BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764476|ref|YP_003065238.2| two-component sensor histidine
kinase protein [Candidatus Liberibacter asiaticus str. psy62]
         (792 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254547827|gb|ACT57298.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score = 1627 bits (4214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/792 (100%), Positives = 792/792 (100%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60
           MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS
Sbjct: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120
           FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK
Sbjct: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
           FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE
Sbjct: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
           TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES
Sbjct: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
           RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT
Sbjct: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR
Sbjct: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT
Sbjct: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI
Sbjct: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML
Sbjct: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG
Sbjct: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT
Sbjct: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI
Sbjct: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG
Sbjct: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780

Query: 781 VTTINCRIPSKE 792
           VTTINCRIPSKE
Sbjct: 781 VTTINCRIPSKE 792


>gi|315122049|ref|YP_004062538.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495451|gb|ADR52050.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 792

 Score = 1305 bits (3376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/792 (78%), Positives = 709/792 (89%), Gaps = 2/792 (0%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60
           M  G+ATI IG  + I  +FSCK+ +FGTI GMLL TIIP+I+LI+QRN+LAK+VNE+YS
Sbjct: 1   MTTGIATIDIGNEMGIWAIFSCKMLIFGTIVGMLLATIIPLIMLIKQRNNLAKQVNESYS 60

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120
             SEIC QLSKYH+LLTENNCL IVWDGKD TPEIIGQL++R+DIP  DTD LSFENWLK
Sbjct: 61  SFSEICYQLSKYHALLTENNCLIIVWDGKDGTPEIIGQLNRRMDIPLKDTDFLSFENWLK 120

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
           FHHYI+LSK  +KLR+EGQSFDL+AET+ND AIKIEGRVSGSCAFLR L+L+G+YSELAE
Sbjct: 121 FHHYIQLSKEIKKLREEGQSFDLIAETKNDWAIKIEGRVSGSCAFLRFLTLNGVYSELAE 180

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
           TTL+CKK+S H+SVFK+LFDSLDFLVW R+Q G++LWAN SYKKNTE      QK I ++
Sbjct: 181 TTLECKKISGHMSVFKLLFDSLDFLVWQRNQRGELLWANNSYKKNTEETSP--QKEIFDN 238

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            KLF+EE+KKRMISS  LE+NFC+TVS++E G +KSYKI++VLNSFGEAGIAIDVSKEIT
Sbjct: 239 YKLFEEEVKKRMISSVELEENFCKTVSSIERGKHKSYKIIKVLNSFGEAGIAIDVSKEIT 298

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
            NDQLTHTY+IL NLTVAIAIFDQNRYLQF+N+SF+ LW++D AFL +NPSNDE LEFLR
Sbjct: 299 ANDQLTHTYDILQNLTVAIAIFDQNRYLQFYNQSFMALWQMDPAFLKSNPSNDEFLEFLR 358

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           SANKLPEQL+WKTWKE IFS YKSS  HKDTWHLP GQTLHVIV +NP GGTIWMFENLT
Sbjct: 359 SANKLPEQLDWKTWKEKIFSAYKSSGDHKDTWHLPTGQTLHVIVVTNPLGGTIWMFENLT 418

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           VQVDLET+YNTLVKVQGE IDHLSEGVAVFGPDGRI+LSNP FRSLWK EE ++SPGTHI
Sbjct: 419 VQVDLETRYNTLVKVQGEAIDHLSEGVAVFGPDGRIQLSNPVFRSLWKVEEEQVSPGTHI 478

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           RNIA+TCS+YYN+SDGWDLFAAIITSF+DERKSLQGTLELLSD+VLEYS+IPLPNAQTML
Sbjct: 479 RNIASTCSKYYNKSDGWDLFAAIITSFEDERKSLQGTLELLSDAVLEYSVIPLPNAQTML 538

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TFVNVTDSVRAERALTEKNEAL KADEIKN+FVQHVSYELRSPLTNIIGFTDLLKTSKLG
Sbjct: 539 TFVNVTDSVRAERALTEKNEALHKADEIKNNFVQHVSYELRSPLTNIIGFTDLLKTSKLG 598

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN KQSQYVEYIS SS +LLNLVNDILDLATV+AGIMKLNYS I+L+DLLNEVKQSIA+
Sbjct: 599 GLNPKQSQYVEYISTSSELLLNLVNDILDLATVNAGIMKLNYSEIILSDLLNEVKQSIAS 658

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           KMHENNI ++++S   LGS VADRQRLLQIF+KILSNA DFSSKGSTV+L+A RD  DF+
Sbjct: 659 KMHENNITLEIVSRKALGSVVADRQRLLQIFAKILSNAADFSSKGSTVLLEADRDATDFV 718

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           FSV +NGS+IPEDM ++VFN FVS++H GQRRG+GLGLSIV+SF+NLHGG V ISS  EG
Sbjct: 719 FSVTSNGSNIPEDMRQNVFNGFVSDSHHGQRRGMGLGLSIVKSFLNLHGGSVFISSPHEG 778

Query: 781 VTTINCRIPSKE 792
            T  NCRIPSK+
Sbjct: 779 TTIFNCRIPSKK 790


>gi|222084231|ref|YP_002542757.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221721679|gb|ACM24835.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 824

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/782 (52%), Positives = 550/782 (70%), Gaps = 8/782 (1%)

Query: 16  ICTLF-SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHS 74
           +  LF S ++AVF  I G++   ++  + ++RQR +L  +  E  + LS+   ++S+Y +
Sbjct: 38  VVRLFTSSEMAVFSVIIGVISAALLSTVWMVRQRGNLESESREIRTALSDANQRISQYQA 97

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
           L+ + N   I+WDG++  PE++GQL      PQ D + L+F  W+K     +L KA +KL
Sbjct: 98  LIADKNRRIIIWDGQNARPELLGQLPVETGAPQ-DNEFLAFGRWMKSWSAGELEKAIDKL 156

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           R  GQSFD+V ET  +  ++ +GR+SG  AF+R ++L+ + +ELAE  ++ ++L   IS 
Sbjct: 157 RGSGQSFDIVVETNREEILEAQGRISGGRAFVRFIALNNLRAELAELKIERERLMTSISA 216

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
           F+ L D++D  VW RD  G + W N +Y +    E +   +A+ E R+      ++R+ +
Sbjct: 217 FQNLLDAIDLPVWQRDADGQLTWVNHAYGE--AVEAVSPDEALREGREFLTTVARERIRA 274

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----E 310
           S+  E  F + +ST+ HGN   + ++ V    G AG+AIDVS+  TV  +L  T     E
Sbjct: 275 SATPESPFHDKISTVVHGNRTFFDVIDVKLPNGSAGMAIDVSETETVRAELERTLKSHAE 334

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            L +L   +AIFD +R LQF+N++FV+LWE+D+AFL   P N ELL+ LRSA KLPEQLN
Sbjct: 335 TLDHLATPVAIFDGDRRLQFYNQAFVQLWELDIAFLEKKPDNSELLDRLRSAKKLPEQLN 394

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           WKTWK+ + SVY++ +T  D WHLPNGQ L V  T++P+GG  W+FENLT QVDLET+YN
Sbjct: 395 WKTWKDGVLSVYRALDTQSDLWHLPNGQILRVFATAHPQGGATWVFENLTEQVDLETRYN 454

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
           TLV VQGETIDHLSEGVAVFGPDGRI+LSNPAFR LW   E +  PGTHI+ +A  C+  
Sbjct: 455 TLVVVQGETIDHLSEGVAVFGPDGRIRLSNPAFRILWNITEIQAKPGTHIQTLAEACAPS 514

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           Y+  DGW  FA  ITSFDDER S QGTLEL S+ VL+Y++IPLPNAQTMLTFVN TDSVR
Sbjct: 515 YDRPDGWKRFAEQITSFDDERPSSQGTLELYSNLVLDYAVIPLPNAQTMLTFVNKTDSVR 574

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERALTEKNEAL KADE+KN FVQHVSYELRSPLTNIIGFTDLLKT  +GSLN +Q++Y+
Sbjct: 575 AERALTEKNEALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGIGSLNDRQAEYI 634

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           ++IS SS +LL LVNDILDLATVDAGIM+LNYS I L+DLL+EV   IA ++ E+ + ++
Sbjct: 635 DHISTSSAVLLTLVNDILDLATVDAGIMRLNYSEIALDDLLDEVSMQIADRLQESGVTLE 694

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +     LGS VAD+QRL QI  K+L+NA +F+ +GST+ LK  RD  DF+FSV + G  I
Sbjct: 695 ITVPAHLGSVVADQQRLKQILLKLLTNAANFAPEGSTIALKCGRDGTDFVFSVADKGPGI 754

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            E++ ++VFNRF S+   G+R G GLGLSIVESF++LH G VSI S     TT+NCRIPS
Sbjct: 755 SEEIMRTVFNRFASSGKGGKRSGAGLGLSIVESFVSLHDGQVSIESQPGKGTTVNCRIPS 814

Query: 791 KE 792
            E
Sbjct: 815 AE 816


>gi|190889670|ref|YP_001976212.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190694949|gb|ACE89034.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 861

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/759 (52%), Positives = 531/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK      L KA ++LR E QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPAETGAPQ-DGEFLAFGLWLKSRSAADLEKAIDRLRDEAQSFDMVVETIRDEVLEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y    E      Q+AI E R++     ++R+ +++  E  F +T+ST+ HGN  
Sbjct: 275 TWVNQAYGDAVEARSP--QQAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AG+A+DVS    V  +L  T     E L +L   +AIFD  R LQF+
Sbjct: 333 FFDVVDVTLPGGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++ E+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVVLEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +GS++ L+  R+  DF+FSV++ G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGSSISLECRREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|327192798|gb|EGE59726.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 861

 Score =  826 bits (2133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/759 (52%), Positives = 530/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK      L KA ++LR   QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPAETGAPQ-DGEFLAFGLWLKSRSASDLEKAIDRLRDGAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y    E      Q+AI E R++     ++R+ +++  E  F +T+ST+ HGN  
Sbjct: 275 TWVNQAYGDAVEARSP--QQAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AG+A+DVS    V  +L  T     E L +L   +AIFD  R LQF+
Sbjct: 333 FFDVVDVTLPGGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++ E+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVALEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +GS++ L+  R+  DF+FSV++ G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGSSISLECRREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|86355698|ref|YP_467590.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86279800|gb|ABC88863.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 860

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/759 (52%), Positives = 530/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 96  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 154

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK H   +L KA ++LR   QSFD+V ET  D  ++ 
Sbjct: 155 LGQLPPETGAPQ-DGEFLAFGLWLKSHSASELEKAIDRLRDGAQSFDMVVETIRDEILEA 213

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD  G +
Sbjct: 214 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPVGRL 273

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y    E      Q+AI E R++     ++R+ + +  E  F +T+ST+  GN  
Sbjct: 274 TWVNQAYGDAVEARSP--QQAINEGREMLTTVARERIRAVTTPESPFHDTISTVVRGNRT 331

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AGIAIDVS    V  +L  T     E L +L   +AIFD  R LQF+
Sbjct: 332 FFDVVDVKVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGERRLQFY 391

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N +FV LWE+D+AFL + P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 392 NHAFVALWELDIAFLESRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 451

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 452 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 511

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 512 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDER 571

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 572 RSSQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 631

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 632 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 691

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++HE+ + +++ +   LGS +AD QRL QI 
Sbjct: 692 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIIADPQRLKQIL 751

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+L+NA +FS +G+++ L+  R+  DF+FSV++ G  I  DM  +VF+RF + A  G+R
Sbjct: 752 LKLLANAANFSPEGASISLECHREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKR 811

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 812 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 850


>gi|222147058|ref|YP_002548015.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734048|gb|ACM35011.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 911

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/779 (51%), Positives = 541/779 (69%), Gaps = 6/779 (0%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75
           I T  S ++     + G +  T++  + L+RQRNS+     E  S LS+   ++S+Y +L
Sbjct: 125 IGTFSSTEMIGLSLVIGAISATLLSTLWLVRQRNSIEADSREIRSALSDANQRISRYQAL 184

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
           + + N   ++WDG +  PE +GQL      PQT+ D L+F  W+K      L  A EKLR
Sbjct: 185 IADKNRRIVIWDGGETKPEQLGQLPVETGAPQTEGDFLAFGRWMKPGSAADLDNAIEKLR 244

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
              QSFDL+ ET  D  ++++GRVSG  AF R ++L+ + +ELAE  ++  +LS  I  F
Sbjct: 245 FNAQSFDLIVETYRDEVLEVQGRVSGGRAFARFVALNNLRAELAELKIEKTRLSTAIETF 304

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           + L +S++  VW RD  G ++W N +Y  +   E +   +AI E R++     ++++ ++
Sbjct: 305 ESLLESVEQPVWQRDSEGRLVWVNQAY--SDAVEALTPDQAIQEGREILNTITREKIRAT 362

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EI 311
                 + +TVST+ HGN   + +V      G  G+AIDVS+E  + ++L+ T     E 
Sbjct: 363 LTPVSPYHDTVSTVVHGNRTFFSVVDTKTPKGSCGMAIDVSREEALREELSRTLKSHAET 422

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L +L   +AIFD  R LQF+N++F +LW++DLAFL + P + ELL+ LRSA KLPEQL+W
Sbjct: 423 LDHLATPVAIFDGERRLQFYNQAFQQLWDLDLAFLESRPDHAELLDRLRSAGKLPEQLSW 482

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           K WKEN  SVY+S +T    WHLPNGQTL VI +++P+GG  W+FENLT QVDLET+YNT
Sbjct: 483 KAWKENTLSVYRSIDTQTVLWHLPNGQTLRVIASAHPQGGATWVFENLTEQVDLETRYNT 542

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           LV+VQGETIDHLSEGVAVFGPDGRI+LSNPAFR+LW   E + +PGTHIR I   C+  Y
Sbjct: 543 LVRVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETQAAPGTHIRAIEEACALSY 602

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            + DGW  F  +ITSF+DER S QGT+EL+S  VL+Y++IPLPNAQTMLTFVN+TDSVRA
Sbjct: 603 EKPDGWRAFGKMITSFEDERPSSQGTIELMSGLVLDYAVIPLPNAQTMLTFVNITDSVRA 662

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERAL EKNEALRKADE+KN FVQH+SYELRSPLTNIIGFTDLLK+S +G LN +Q +YV+
Sbjct: 663 ERALLEKNEALRKADELKNDFVQHISYELRSPLTNIIGFTDLLKSSAIGPLNERQGEYVD 722

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +IS SS +LL +VNDILDLATVDAGIM+L YS I L DLL++V   +  ++ E  + +++
Sbjct: 723 HISTSSAVLLTIVNDILDLATVDAGIMRLTYSDIDLTDLLDDVSMQMTDRLQEGGVTLEI 782

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           ++   LG  VAD+QRL QI  KI++NA++FS +G+ V+LK  R++ DF+FSV + G  IP
Sbjct: 783 LAPSHLGDIVADQQRLKQILIKIITNAVNFSPEGAKVVLKCWREDADFVFSVSDTGCGIP 842

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           EDM  SVF RF SNA  G+R G GLGLSIVESF++LH G VSI+S     TT+ CRIPS
Sbjct: 843 EDMLPSVFKRFSSNAKGGKRTGAGLGLSIVESFVHLHNGTVSINSVPNQGTTVLCRIPS 901


>gi|209551534|ref|YP_002283451.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537290|gb|ACI57225.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 861

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/759 (53%), Positives = 531/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLESESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK      L KA ++LR   QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPPETGAPQ-DGEFLAFGLWLKSRSAADLEKAIDRLRDGAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y +  E      Q+AI E R++     ++R+ ++   E  F +T+ST+ HGN  
Sbjct: 275 TWVNQAYGEAVEARSP--QQAINEGREMLTTVARERIRATVTPESPFHDTISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AGIAIDVS    V  +L  T     E L +L   +AIFD +R LQF+
Sbjct: 333 FFDVVDVRLPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGDRRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDGWKAFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++HE+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +G+++ L+  R+  DF+FSV + G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGTSISLECHREGTDFVFSVSDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|241206973|ref|YP_002978069.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860863|gb|ACS58530.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 861

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/759 (52%), Positives = 531/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK     +L KA ++LR E QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPPETGAPQ-DGEFLAFGLWLKSRSASELEKAIDRLRDEAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD  G +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPVGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y +  E      Q+AI E R++     ++R+ +++  E  F + +ST+ HGN  
Sbjct: 275 TWVNQAYGEAVEARSP--QQAINEGREMLTTVARERIRATTTPESPFHDKISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AGIAIDVS    V  +L  T     E L +L   +AIFD  R LQF+
Sbjct: 333 FFDVVDVRVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGERRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQTDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y++ DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDQPDGWKTFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G L  +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTPGVGPLTERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++HE+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +G+++ L+  R+  DF+FSV + G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGTSISLECHREGTDFVFSVGDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|15887386|ref|NP_353067.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15154889|gb|AAK85852.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 881

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/791 (49%), Positives = 536/791 (67%), Gaps = 6/791 (0%)

Query: 4   GMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLS 63
            MA  G+          S +   +    GML  T+  ++ L+RQR ++  + +E    L+
Sbjct: 83  AMAQDGLVAKTSARLFSSGETITYSLFVGMLSATLFSVVWLVRQRGNIEAESSEYRQALA 142

Query: 64  EICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH 123
           +   +++KY +L+++ +   ++WDG D+ PE +GQL     +PQ D D L+F  WLK   
Sbjct: 143 QSHHKIAKYEALISDKSRRIVIWDGVDKRPEFLGQLPAETGVPQADQDFLAFGRWLKPAS 202

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
             +L K+ EKLR   QSFDL  ETQ    I+++GRVSG  AF R ++L+ + +ELAE  +
Sbjct: 203 AGQLEKSIEKLRSHAQSFDLTIETQRGEVIEVQGRVSGGNAFARFIALNNLRAELAELQV 262

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           + ++L   +S F+ L DS++  VW R+  G++ W N +Y    +      ++A+ E R+L
Sbjct: 263 ERERLLASVSTFQELLDSIEQPVWRRNGEGELTWVNHAYAHAVDARNA--EQAVQEKREL 320

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
                ++++ +++  E  + + +ST+  GN   + +V +  + G AGIAID ++  T+ +
Sbjct: 321 LNTVTRQKIRAAATPESPYHDRISTVVSGNRSFFDVVDIKTAGGSAGIAIDATEAETIRE 380

Query: 304 QLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           +L        E L +L   +AIFD  + LQF+N++F  LW  DL  L + P N ELL+ L
Sbjct: 381 ELKRVLKSHAETLDHLATPVAIFDGRQRLQFYNQAFASLWGFDLVLLESGPDNSELLDRL 440

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           RSA KLPEQLNWK WKE   SVY+S +T  D WHLPNGQTL VI T++P+GG  W+FENL
Sbjct: 441 RSAGKLPEQLNWKNWKETALSVYRSLDTKTDLWHLPNGQTLRVIATAHPQGGATWVFENL 500

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T QVDL+ +YNTLVKVQGETIDHL+EGVAVFG DGRI+LSNPAFR+LW    +    GTH
Sbjct: 501 TEQVDLQMRYNTLVKVQGETIDHLAEGVAVFGADGRIRLSNPAFRALWGVTADEAETGTH 560

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           IR I   C++ Y+  DGW  F+  ITSFDDER S QGTLELLS  VL+Y+IIPLP+AQTM
Sbjct: 561 IRAIETACAQSYDGPDGWRAFSQFITSFDDERPSRQGTLELLSGLVLDYAIIPLPDAQTM 620

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LTFVN+TDSVRAERAL EKN+AL KADE+KN FVQHVSYELRSPLTNIIGFTDLLKT  +
Sbjct: 621 LTFVNMTDSVRAERALKEKNDALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGI 680

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L  +Q++Y+++IS SS++LL +VNDILDLATVDAGIM+LNYS   LN+LL++V   IA
Sbjct: 681 GQLTERQAEYLDHISTSSSVLLTIVNDILDLATVDAGIMQLNYSDNDLNELLDDVSVQIA 740

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++ E+ I +++++   LGS VAD QRL QI  K+L+NA++F+ +GS+V L   R  GDF
Sbjct: 741 DRLQESGISLEIVAPAHLGSLVADHQRLKQILIKLLTNAINFAPEGSSVQLSCQRSEGDF 800

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +FSV + G  IPEDM KSVF+RF +  + G+R G GLGLSIVESF++LH G VSI S   
Sbjct: 801 VFSVADKGPGIPEDMLKSVFDRFATRGNGGRRTGAGLGLSIVESFVSLHHGTVSIDSRPG 860

Query: 780 GVTTINCRIPS 790
             T + CRIPS
Sbjct: 861 NGTIVTCRIPS 871


>gi|116249796|ref|YP_765634.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254444|emb|CAK05518.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 861

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/759 (52%), Positives = 530/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK     +L KA ++LR E QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPPETGAPQ-DGEFLAFGLWLKSRSASELEKAIDRLRDEAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD  G +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPVGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y +  E      Q+AI E R++     ++R+ +++  E  F + +ST+  GN  
Sbjct: 275 TWVNQAYGEAVEARSP--QQAINEGREMLTTVARERIRATTTPESPFHDKISTVVRGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AGIAIDVS    V  +L  T     E L +L   +AIFD +R LQF+
Sbjct: 333 FFDVVDVRVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGDRRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACTPSYDRPDGWKTFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G L  +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTPGVGPLTERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++HE+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +G+++ L+  R+  DF+F+V + G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGTSISLECHREGTDFVFAVSDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|325291480|ref|YP_004277344.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325059333|gb|ADY63024.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 860

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/799 (49%), Positives = 544/799 (68%), Gaps = 11/799 (1%)

Query: 1   MMAGMATIGIGK-GIEICT---LFSC-KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKV 55
           ++AG A + + + G+   T   LFS  +   +    GML  T+  ++ L+RQR ++  + 
Sbjct: 54  VLAGSANVALAQDGLVAKTGARLFSSGETITYSLFVGMLSATLFSVVWLVRQRGNIEAES 113

Query: 56  NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
            E    L+E   +++KY +L+++ +   ++WDG D+ PE +GQL      PQ D D L+F
Sbjct: 114 GEYRKALAESHHKIAKYEALISDKSRRIVIWDGVDKRPEFLGQLPVETGAPQADHDFLAF 173

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
             WLK     +L K+ EKLR   QSFDL  ETQ    I+++GRVSG  AF R ++L+ + 
Sbjct: 174 GRWLKPSSASQLEKSLEKLRSHAQSFDLTIETQRGEVIEVQGRVSGGNAFARFVALNNLR 233

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +ELAE  ++ ++L   +S F+ L DS++  VW R+  G+++W N +Y    +      ++
Sbjct: 234 AELAELQVERERLIASVSTFQELLDSIEQPVWRRNGEGELIWVNHAYAHAVDARDA--EQ 291

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
            I E R+L     ++++ +++     + + +ST+  GN   + +V +  + G AGIAID 
Sbjct: 292 TIQEKRELLNTVTRQKIRAAATPSSPYHDRISTVVSGNRTFFDVVDIKTAGGSAGIAIDA 351

Query: 296 SKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           ++  T  +++        E L +L   +AIFD  + LQF+N++F  LW  DL FL + P 
Sbjct: 352 TEAETTREEMKRVLKSHAETLDHLATPVAIFDGRQRLQFYNQAFASLWGFDLVFLESGPD 411

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
           N ELL+ LR+A KLPEQLNWK WKE   SVY+S +T  D WHLPNGQTL VI T++P+GG
Sbjct: 412 NSELLDRLRTAGKLPEQLNWKNWKETALSVYRSLDTKTDLWHLPNGQTLRVIATAHPQGG 471

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             W+FENLT QVDL+ +YNTLVKVQGETIDHL+EGVAVFG DGRI+LSNPAFR+LW    
Sbjct: 472 ATWVFENLTEQVDLQMRYNTLVKVQGETIDHLAEGVAVFGADGRIRLSNPAFRALWGVTA 531

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
            +   GTHIR + A C++ Y++ DGW  F+  ITSFDDER S QGTLELLS  VL+Y+II
Sbjct: 532 EQAETGTHIRAVEAACTQSYDKPDGWRSFSQFITSFDDERPSRQGTLELLSGLVLDYAII 591

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           PLP+AQTMLTFVN+TDSVRAERAL EKN+AL KADE+KN FVQHVSYELRSPLTNIIGFT
Sbjct: 592 PLPDAQTMLTFVNMTDSVRAERALKEKNDALLKADELKNDFVQHVSYELRSPLTNIIGFT 651

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLLKT  +G L  +Q++Y+++IS SS++LL +VNDILDLATVDAGIM+LNYS   LN+LL
Sbjct: 652 DLLKTPGIGELTDRQAEYLDHISTSSSVLLTIVNDILDLATVDAGIMQLNYSENDLNELL 711

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           ++V   IA ++ E+ I +++++   LGS VAD QRL QI  K+L+NA++F+ +GS+V L 
Sbjct: 712 DDVSVQIADRLQESGISLEIVAPAHLGSLVADHQRLKQILIKLLTNAINFAPEGSSVQLS 771

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             R  GDF+FSV + G  IPEDM K+VF+RF +  + G+R G GLGLSIVESF++LH G 
Sbjct: 772 CQRSEGDFLFSVADKGPGIPEDMLKAVFDRFETRGNGGRRTGAGLGLSIVESFVSLHHGT 831

Query: 772 VSISSSDEGVTTINCRIPS 790
           VSI S     T + CRIPS
Sbjct: 832 VSIDSRPGNGTIVTCRIPS 850


>gi|15963791|ref|NP_384144.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|15072966|emb|CAC41425.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021]
          Length = 826

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/776 (50%), Positives = 520/776 (67%), Gaps = 9/776 (1%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           + ++  F  + G++   +I  I LIRQR ++  +  E  S LS+   ++S++ +L+ + N
Sbjct: 48  TSEVVTFSVLIGVISAAMISAIWLIRQRGNIEAENRELRSNLSDANQRISRFQALIADKN 107

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
              ++WDG  E PE +GQL      PQ D D L+F  W+K     +L KA E LR + QS
Sbjct: 108 RRIVIWDGLAERPEFLGQLPAETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRAQAQS 167

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           FDLV ETQ +  ++ +GRVSG  AF+R ++L+ + +ELAE  L+  +L   +S F+ L D
Sbjct: 168 FDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFRTLLD 227

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           ++D   W R   G + W N +Y    ET+      A+ E R+L     ++R+ + S L+ 
Sbjct: 228 AVDLPAWQRGGDGRLQWVNAAYANAVETQSA--STAVAEERELLATTARERIRAVSTLQT 285

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316
            F + VST+  GN   + +V      G AGIAIDVS    V ++L  T     E L +L 
Sbjct: 286 PFRDKVSTVVRGNRTFFDVVDARTPAGSAGIAIDVSGIEAVREELARTLKSHAETLEHLA 345

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             +AIFD N+ LQF+N++F  LW++D+ FL   P N E+L+ LR+  KLPEQLNWK WK 
Sbjct: 346 TPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEVLDRLRAGGKLPEQLNWKQWKT 405

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           +  SVY++ +T  D WHLPNGQTL V  T+ P+GG  W+FENLT +VDLET+YNTLV+VQ
Sbjct: 406 SALSVYQAIDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETRYNTLVQVQ 465

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           GETIDHL+EGVAVFGPDGRI+LSNPAFR++W   E    PGTHIR I   C   Y++ DG
Sbjct: 466 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEAQPGTHIRAIEQACLASYDQPDG 525

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           W  FA IITSFDDER S +G LEL +  +L+Y++IPLPNAQTMLTFVN+TDSVR ERALT
Sbjct: 526 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVERALT 585

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT   G LN +Q++YV++I+ S
Sbjct: 586 EKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGELNERQAEYVDHIATS 645

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S++LL +VNDILDLATVDAGI++L  S + L DL+++V Q +  ++ E+ + ++  +   
Sbjct: 646 SSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQMGDRLVESGVSLRTDAPDN 705

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           LG   AD+QRL QIF K+L+NA +F+  GST+ LK  R+  DF FSV + G  IP+D+  
Sbjct: 706 LGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGSDFAFSVTDTGPGIPQDVLN 765

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +VFNRF S    GQR G GLGLSIVESF++LH G+VSI S +   T + CRIPS E
Sbjct: 766 TVFNRFESY---GQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTAVTCRIPSAE 818


>gi|307310979|ref|ZP_07590624.1| histidine kinase [Sinorhizobium meliloti BL225C]
 gi|307322010|ref|ZP_07601389.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306892348|gb|EFN23155.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306899659|gb|EFN30286.1| histidine kinase [Sinorhizobium meliloti BL225C]
          Length = 826

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/776 (50%), Positives = 520/776 (67%), Gaps = 9/776 (1%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           + ++  F  + G++   +I  I LIRQR ++  +  E  S LS+   ++S++ +L+ + N
Sbjct: 48  TSEVVTFSVLIGVISAAMISAIWLIRQRGNIEAENRELRSNLSDANQRISRFQALIADKN 107

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
              ++WDG  E PE +GQL      PQ D D L+F  W+K     +L KA E LR + QS
Sbjct: 108 RRIVIWDGLAERPEFLGQLPAETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRAQAQS 167

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           FDLV ETQ +  ++ +GRVSG  AF+R ++L+ + +ELAE  L+  +L   +S F+ L D
Sbjct: 168 FDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFRTLLD 227

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           ++D   W R   G + W N +Y    ET+      A+ E R+L     ++R+ + S L+ 
Sbjct: 228 AVDLPAWQRGGDGRLEWVNAAYANAVETQSA--STAVAEERELLATTARERIRAVSTLQT 285

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316
            F + VST+  GN   + +V      G AGIAIDVS    V ++L  T     E L +L 
Sbjct: 286 PFRDKVSTVVRGNRTFFDVVDARTPAGSAGIAIDVSGIEAVREELARTLKSHAETLEHLA 345

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             +AIFD N+ LQF+N++F  LW++D+ FL   P N E+L+ LR+  KLPEQLNWK WK 
Sbjct: 346 TPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEVLDRLRAGGKLPEQLNWKQWKT 405

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           +  SVY++ +T  D WHLPNGQTL V  T+ P+GG  W+FENLT +VDLET+YNTLV+VQ
Sbjct: 406 SALSVYQAIDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETRYNTLVQVQ 465

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           GETIDHL+EGVAVFGPDGRI+LSNPAFR++W   E    PGTHIR I   C   Y++ DG
Sbjct: 466 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEAQPGTHIRAIEQACLASYDQPDG 525

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           W  FA IITSFDDER S +G LEL +  +L+Y++IPLPNAQTMLTFVN+TDSVR ERALT
Sbjct: 526 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVERALT 585

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT   G LN +Q++YV++I+ S
Sbjct: 586 EKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGELNERQAEYVDHIATS 645

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S++LL +VNDILDLATVDAGI++L  S + L DL+++V Q +  ++ E+ + ++  +   
Sbjct: 646 SSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQMGDRLVESGVSLRTDAPDN 705

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           LG   AD+QRL QIF K+L+NA +F+  GST+ LK  R+  DF FSV + G  IP+D+  
Sbjct: 706 LGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGSDFAFSVTDTGPGIPQDVLN 765

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +VFNRF S    GQR G GLGLSIVESF++LH G+VSI S +   T + CRIPS E
Sbjct: 766 TVFNRFESY---GQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTAVTCRIPSAE 818


>gi|227823897|ref|YP_002827870.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234]
 gi|227342899|gb|ACP27117.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234]
          Length = 827

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/776 (49%), Positives = 520/776 (67%), Gaps = 9/776 (1%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           + ++  F  + G++   ++  I LIRQR ++  +     + LS+   ++S++ +L+ + N
Sbjct: 49  TSEVVTFSVLIGVISAAMLSAIWLIRQRGNIEAENRALRADLSDANQRISRFQALIADKN 108

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
              +VWDG  E PE +GQL      PQ D D L+F  W+K     +L KA E LR + QS
Sbjct: 109 RRIVVWDGLAERPEFLGQLPLETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRAQAQS 168

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           FDLV ETQ +  ++ +GRVSG  AF+R ++L+ + +ELAE  L   +L   +S F+ L D
Sbjct: 169 FDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLDRDQLHVSLSTFRTLLD 228

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           ++D  VW R   G + W N +Y +  +        A  E R+L     ++++ + S+ E 
Sbjct: 229 AIDLPVWQRGADGKLEWVNEAYAEAVDARSPA--AAASEGRELLATAAREKIRAVSSFET 286

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316
            F + +ST+  GN   + +V      G AGIAIDVS    V ++L  T     E L +L 
Sbjct: 287 PFRDKLSTVVKGNRTFFDVVDARTHAGSAGIAIDVSGIEAVREELARTLKSHAETLDHLA 346

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             +AIFD N+ LQF+N++F  LWE+D+ FL   P N E+L+ LR+ NKLPEQLNWK WK 
Sbjct: 347 TPVAIFDGNQRLQFYNQAFQRLWELDMGFLERKPDNGEVLDRLRAGNKLPEQLNWKQWKA 406

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           N  SVY++ +T  D WHLPNGQTL V  T+ P+GG  W+FENLT +VDLE +YNTLV+VQ
Sbjct: 407 NALSVYQALDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLEIRYNTLVQVQ 466

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           GETIDHL+EGVAVFGPDGRI+LSNPAFR++W   E    PGTHIR +   C   Y++ DG
Sbjct: 467 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISEVEAKPGTHIRAVEQACLSSYDQPDG 526

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           W  FA IITSFDDER S +G LEL +  +L+Y++IPLPNAQTMLTFVN+TDSVR ERALT
Sbjct: 527 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVERALT 586

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT   G+LN +Q++YV++I+ S
Sbjct: 587 EKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPAFGALNDRQAEYVDHIATS 646

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S +LL +VNDILDLATVDAGI++L+ S + L DLL++V Q +A ++ E+   +++ +   
Sbjct: 647 SALLLTIVNDILDLATVDAGIVELDMSEVNLLDLLDDVAQQMADRLTESGASLRIDAADN 706

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           LG  VAD+QRL Q+F K+L+NA +F+  GS + LK  R+ GDF+FSV + G  IP+D+  
Sbjct: 707 LGRIVADQQRLKQVFIKLLTNAANFAPDGSAIDLKCRREGGDFVFSVSDTGPGIPQDVLN 766

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +VFNRF S    GQR G GLGLSIVESF++LH G VSI S +   T + CRIPS E
Sbjct: 767 TVFNRFESY---GQRGGAGLGLSIVESFVSLHHGTVSIRSKEGEGTEVTCRIPSAE 819


>gi|150398438|ref|YP_001328905.1| histidine kinase [Sinorhizobium medicae WSM419]
 gi|150029953|gb|ABR62070.1| histidine kinase [Sinorhizobium medicae WSM419]
          Length = 826

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/776 (49%), Positives = 515/776 (66%), Gaps = 9/776 (1%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           + ++  F  + G++   +I  I LIRQR ++  +  +  S LS+    +S++ +L+ + N
Sbjct: 48  TPEVVTFSVLIGVISAAMISAIWLIRQRGNIEAENRDLRSSLSDANQHISRFQALIADKN 107

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
              ++WDG  +  E +G L      PQ D D L+F  W+K H   +L KA E LR + QS
Sbjct: 108 RRIVIWDGLADRAEFLGHLPVETGAPQDDRDFLAFGRWVKPHSAGQLEKAIEALRAQAQS 167

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           FDLV ETQ +  ++ +GRVSG  AF+R ++L+ + +ELAE  L+  +L   +S F+ L D
Sbjct: 168 FDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFRTLLD 227

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           ++D   W R   G + W N +Y K  ET       A+ E R+L     + R+ + + L+ 
Sbjct: 228 AVDLPAWQRAGDGRLEWVNAAYAKAVETPSASL--AVAEERELLATAARDRIRAVATLQT 285

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316
            F + VST+  GN   + +V      G AGIAIDVS    V ++L  T     E L +L 
Sbjct: 286 PFRDKVSTVVRGNRTFFDVVDARTPAGSAGIAIDVSGIEAVREELARTLKSHAETLEHLA 345

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             +AIFD N+ LQF+N++F  LW++D+ FL   P N E+ + LR   KLPEQLNWK WK 
Sbjct: 346 TPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEMFDRLRDGGKLPEQLNWKQWKA 405

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           N  SVY++ +T  D WHLPNGQTL V  T+ P+GG  W+FENLT +VDLET+YNTLV+VQ
Sbjct: 406 NALSVYQALDTQTDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLETRYNTLVQVQ 465

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           GETIDHL+EGVAVFGPDGRI+LSNPAFR++W   E    PGTHIR I   C   Y++ DG
Sbjct: 466 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGINETEAQPGTHIRAIEQACLASYDQQDG 525

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           W  FA IITSFDDER S +G LEL +  +L+Y++IPLPNAQTMLTFVN+TDSVR ERALT
Sbjct: 526 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVERALT 585

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT   G LN +Q++YV++I+ S
Sbjct: 586 EKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGELNERQAEYVDHIATS 645

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S++LL +VNDILDLATVDAGI++L  + + L DL+++V Q +  ++ E+ + ++  +   
Sbjct: 646 SSLLLTIVNDILDLATVDAGIVELELAEVNLIDLIDDVTQQMGDRLVESGVSLRTDAPDN 705

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           LG   AD+QRL QIF K+L+NA +F+  GST+ LK  R+  DF FSV + G  IP+D+  
Sbjct: 706 LGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGSDFAFSVTDTGPGIPQDVLN 765

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +VFNRF S    GQR G GLGLSIVESF++LH G+VSI S +   T + CRIPS +
Sbjct: 766 TVFNRFESY---GQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTEVTCRIPSAQ 818


>gi|218517057|ref|ZP_03513897.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 636

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/628 (56%), Positives = 454/628 (72%), Gaps = 6/628 (0%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG + W N +Y    
Sbjct: 1   RFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRLTWVNQAYGDAV 60

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
           E      Q+AI E R++     ++R+ +++  E  F +T+ST+ HGN   + +V V    
Sbjct: 61  EARSP--QQAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRTFFDVVDVTLPG 118

Query: 287 GEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G AG+A+DVS    V  +L  T     E L +L   +AIFD  R LQF+N++FV LWE+D
Sbjct: 119 GSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFYNQAFVALWELD 178

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           +AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D WHLPNGQTL V
Sbjct: 179 IAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDLWHLPNGQTLRV 238

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
             T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFGPDGRI+LSNPA
Sbjct: 239 FATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPA 298

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           FR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER+S QGTLEL S
Sbjct: 299 FRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRSGQGTLELFS 358

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN FVQHVSYELRS
Sbjct: 359 GLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFVQHVSYELRS 418

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLATVDAGIM+LNY
Sbjct: 419 PLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNY 478

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + I LNDLL++V   IA ++ E+ + +++ +   LGS VAD QRL QI  K+LSNA +FS
Sbjct: 479 AEIDLNDLLDDVSMQIADRLQESGVVLEITAPAYLGSIVADPQRLKQILLKLLSNAANFS 538

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS++ L+  R+  DF+FSV++ G  I  DM  +VF+RF + A  G+R G GLGLSIV+
Sbjct: 539 PEGSSISLECRREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKRGGAGLGLSIVD 598

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
           SF++LH G V+I S     TT+ CRIPS
Sbjct: 599 SFVSLHHGDVTIDSEPGKGTTVVCRIPS 626


>gi|163757504|ref|ZP_02164593.1| putative sensor histidine kinase protein [Hoeflea phototrophica
           DFL-43]
 gi|162285006|gb|EDQ35288.1| putative sensor histidine kinase protein [Hoeflea phototrophica
           DFL-43]
          Length = 869

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/775 (45%), Positives = 499/775 (64%), Gaps = 6/775 (0%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           S ++  F  + G +   +I  I LIR+R  +  +     + L++   QLS+Y SL+ + +
Sbjct: 88  SLEVVNFAMVIGAISAAMISAIWLIRERAKIDAENVALRTALADSHAQLSRYQSLIVDRD 147

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
              +VWDG     E++G L      PQ   D L+F  WL+      L+++ + LR + + 
Sbjct: 148 RQIVVWDGVGVPAEVLGNLSPATGAPQKPDDFLAFGRWLEPRSAASLNESIDLLRAQAER 207

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           FDL+ ET     I+ +GRVSG  AF+R ++L  + +ELAE   +  +L   +  F+ L D
Sbjct: 208 FDLIVETVRGHVIEAQGRVSGGRAFVRFVALSNVRAELAELKTERDRLLASVDTFQTLLD 267

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
            +D   W R     +LW N +Y +    EG      I    +L     ++++ +++  E+
Sbjct: 268 VIDMPAWLRGSDAKLLWVNNAYVR--AVEGPDRSDTIERGMELLGTAAREKIRAAATPER 325

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316
            F + VST+  G+ +  ++  V    G AG+A+DVS E  + ++L  T     E L +L 
Sbjct: 326 PFLDRVSTVIQGHRRFLEVADVKTPGGNAGLALDVSVEEDLREELRRTIQSHSETLDHLA 385

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             +AIFD+++ LQFHN++F +LWE+D+ FLA  P N E LE LR+  KLPE   W+ WKE
Sbjct: 386 TPVAIFDRDQRLQFHNQAFQQLWELDIPFLARRPDNGEFLERLRADGKLPEPHAWRDWKE 445

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
            + SVY+S ET    WHLP+GQTL+V   ++P+GG  W+FENLT +VDLETKYNTL++VQ
Sbjct: 446 QMLSVYRSVETTPHLWHLPDGQTLNVFANAHPQGGVTWVFENLTEKVDLETKYNTLLQVQ 505

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           GETIDHL+EGV VFGPDGRI+LSNP+FR+LW   E ++ PGTHIR+I A C   Y E DG
Sbjct: 506 GETIDHLAEGVGVFGPDGRIRLSNPSFRALWGLTEEQVKPGTHIRDITAACEPSYREPDG 565

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           W LFA  ITSF++ER+S  G +EL++  +L+Y+++PLPN QTM+ FVNVTDSV AER LT
Sbjct: 566 WKLFAGEITSFNEERRSRDGRIELVTGLILDYAVVPLPNGQTMVAFVNVTDSVDAERMLT 625

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E NEALRKAD +KN FV HVSYELRSPLTNIIGFTDLLKT  +G L  +Q++Y+++IS S
Sbjct: 626 ETNEALRKADALKNDFVNHVSYELRSPLTNIIGFTDLLKTPGVGDLTERQAEYLDHISTS 685

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S++LL +VNDILDLATVDAGIM+L  + + ++ LL+E    IA    EN ++++  S   
Sbjct: 686 SSVLLTIVNDILDLATVDAGIMQLEIAEVNIDTLLSEAADQIADWFKENGLKLETESANA 745

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             + + D QRL QI  K+L NA +F+ +GS V L  A ++   +FSV ++G  IPE   K
Sbjct: 746 PATMMGDYQRLKQILFKLLMNAANFAPEGSVVRLGCAMEDESIVFSVADSGPGIPESARK 805

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            VF RF ++   G+RRG GLGLSIV+SF++LH G VS+  S+   TTI CR P+K
Sbjct: 806 DVFARFETHGQGGRRRGAGLGLSIVQSFVSLHNGTVSVEDSEGSGTTILCRFPTK 860


>gi|62290941|ref|YP_222734.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82700852|ref|YP_415426.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus
           2308]
 gi|189025153|ref|YP_001935921.1| sensory box histidine kinase, hypothetical [Brucella abortus S19]
 gi|254690232|ref|ZP_05153486.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 6
           str. 870]
 gi|254731263|ref|ZP_05189841.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 4
           str. 292]
 gi|256258485|ref|ZP_05464021.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 9
           str. C68]
 gi|260546204|ref|ZP_05821944.1| histidine kinase [Brucella abortus NCTC 8038]
 gi|297247326|ref|ZP_06931044.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196]
 gi|62197073|gb|AAX75373.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 1
           str. 9-941]
 gi|82616953|emb|CAJ12057.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Bacterial sensor protein,
           C-terminal:Histidine kinase [Brucella melitensis biovar
           Abortus 2308]
 gi|189020725|gb|ACD73447.1| sensory box histidine kinase, hypothetical [Brucella abortus S19]
 gi|260096311|gb|EEW80187.1| histidine kinase [Brucella abortus NCTC 8038]
 gi|297174495|gb|EFH33842.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196]
          Length = 859

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 313/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 66  GARISMPFGGSVGAFEVIQFSIFLGGMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 662 NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 842 TVICRFPSE 850


>gi|306842790|ref|ZP_07475431.1| histidine kinase [Brucella sp. BO2]
 gi|306287063|gb|EFM58571.1| histidine kinase [Brucella sp. BO2]
          Length = 850

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 313/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 57  GARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 116

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 117 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 176

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 177 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 236

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y    +       + IGE R+LF  +
Sbjct: 237 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANA--SQVIGEGRELFGAQ 294

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 295 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 354

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 355 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 414

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 415 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 474

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 475 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 534

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 535 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 592

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 593 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 652

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 653 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 712

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 713 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 772

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 773 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 832

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 833 TVICRFPSE 841


>gi|237816446|ref|ZP_04595439.1| sensory box histidine kinase [Brucella abortus str. 2308 A]
 gi|237788513|gb|EEP62728.1| sensory box histidine kinase [Brucella abortus str. 2308 A]
          Length = 870

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 313/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 77  GARISMPFGGSVGAFEVIQFSIFLGGMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 136

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 137 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 196

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 197 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 256

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 257 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 314

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 315 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 374

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 375 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 434

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 435 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 494

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 495 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 554

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 555 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 612

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 613 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 672

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 673 NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 732

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 733 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 792

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 793 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 852

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 853 TVICRFPSE 861


>gi|260755773|ref|ZP_05868121.1| histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|260758996|ref|ZP_05871344.1| histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260884797|ref|ZP_05896411.1| histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260669314|gb|EEX56254.1| histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260675881|gb|EEX62702.1| histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|260874325|gb|EEX81394.1| histidine kinase [Brucella abortus bv. 9 str. C68]
          Length = 843

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 313/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 50  GARISMPFGGSVGAFEVIQFSIFLGGMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 287

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 646 NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 826 TVICRFPSE 834


>gi|254694720|ref|ZP_05156548.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
          Length = 859

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 480/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR+R+ +A + NE  S  +++  
Sbjct: 66  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRERSKIANENNELRSKFADLNL 125

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 602 IDVTDTVRVERALKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 842 TVICRFPSE 850


>gi|261215049|ref|ZP_05929330.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|260916656|gb|EEX83517.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
          Length = 843

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 480/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR+R+ +A + NE  S  +++  
Sbjct: 50  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRERSKIANENNELRSKFADLNL 109

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 287

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 586 IDVTDTVRVERALKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 826 TVICRFPSE 834


>gi|261221148|ref|ZP_05935429.1| histidine kinase [Brucella ceti B1/94]
 gi|261314866|ref|ZP_05954063.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261316576|ref|ZP_05955773.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|261751241|ref|ZP_05994950.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261755806|ref|ZP_05999515.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|265987648|ref|ZP_06100205.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|265992123|ref|ZP_06104680.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993860|ref|ZP_06106417.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|265997108|ref|ZP_06109665.1| histidine kinase [Brucella ceti M490/95/1]
 gi|260919732|gb|EEX86385.1| histidine kinase [Brucella ceti B1/94]
 gi|261295799|gb|EEX99295.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|261303892|gb|EEY07389.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261740994|gb|EEY28920.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261745559|gb|EEY33485.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|262551576|gb|EEZ07566.1| histidine kinase [Brucella ceti M490/95/1]
 gi|262764841|gb|EEZ10762.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|263003189|gb|EEZ15482.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264659845|gb|EEZ30106.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|326410096|gb|ADZ67161.1| histidine kinase [Brucella melitensis M28]
          Length = 843

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 50  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 287

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 826 TVICRFPSE 834


>gi|23502947|ref|NP_699074.1| sensory box histidine kinase [Brucella suis 1330]
 gi|161620011|ref|YP_001593898.1| histidine kinase [Brucella canis ATCC 23365]
 gi|225853527|ref|YP_002733760.1| histidine kinase [Brucella melitensis ATCC 23457]
 gi|254700729|ref|ZP_05162557.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|254705101|ref|ZP_05166929.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|254707383|ref|ZP_05169211.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|254709075|ref|ZP_05170886.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|256030600|ref|ZP_05444214.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|256045702|ref|ZP_05448580.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112422|ref|ZP_05453343.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|256158596|ref|ZP_05456486.1| histidine kinase [Brucella ceti M490/95/1]
 gi|256254007|ref|ZP_05459543.1| histidine kinase [Brucella ceti B1/94]
 gi|256262989|ref|ZP_05465521.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|256370497|ref|YP_003108008.1| sensory box histidine kinase, putative [Brucella microti CCM 4915]
 gi|260169506|ref|ZP_05756317.1| sensory box histidine kinase, putative [Brucella sp. F5/99]
 gi|260563004|ref|ZP_05833490.1| histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260567429|ref|ZP_05837899.1| histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261759034|ref|ZP_06002743.1| histidine kinase [Brucella sp. F5/99]
 gi|23348982|gb|AAN30989.1| sensory box histidine kinase, putative [Brucella suis 1330]
 gi|161336822|gb|ABX63127.1| histidine kinase [Brucella canis ATCC 23365]
 gi|225641892|gb|ACO01806.1| histidine kinase [Brucella melitensis ATCC 23457]
 gi|256000660|gb|ACU49059.1| sensory box histidine kinase, putative [Brucella microti CCM 4915]
 gi|260153020|gb|EEW88112.1| histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260156947|gb|EEW92027.1| histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261739018|gb|EEY27014.1| histidine kinase [Brucella sp. F5/99]
 gi|263092862|gb|EEZ17037.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9]
          Length = 859

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 66  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 842 TVICRFPSE 850


>gi|225626475|ref|ZP_03784514.1| sensory box histidine kinase [Brucella ceti str. Cudo]
 gi|294851326|ref|ZP_06791999.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026]
 gi|225618132|gb|EEH15175.1| sensory box histidine kinase [Brucella ceti str. Cudo]
 gi|294819915|gb|EFG36914.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026]
          Length = 870

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 77  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 136

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 137 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 196

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 197 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 256

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 257 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 314

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 315 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 374

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 375 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 434

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 435 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 494

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 495 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 554

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 555 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 612

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 613 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 672

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 673 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 732

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 733 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 792

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 793 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 852

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 853 TVICRFPSE 861


>gi|306843516|ref|ZP_07476117.1| histidine kinase [Brucella sp. BO1]
 gi|306276207|gb|EFM57907.1| histidine kinase [Brucella sp. BO1]
          Length = 859

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 66  GARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y    +       + I E R+LF  +
Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANA--SQVISEGRELFGAQ 303

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 722 RDHNIGLDVDIADDVDMFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 842 TVICRFPSE 850


>gi|265983095|ref|ZP_06095830.1| histidine kinase [Brucella sp. 83/13]
 gi|264661687|gb|EEZ31948.1| histidine kinase [Brucella sp. 83/13]
          Length = 843

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 50  GARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y    +       + I E R+LF  +
Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANA--SQVISEGRELFGAQ 287

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 288 ARQRLERGRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 826 TVICRFPSE 834


>gi|254718142|ref|ZP_05179953.1| histidine kinase [Brucella sp. 83/13]
 gi|306837656|ref|ZP_07470525.1| histidine kinase [Brucella sp. NF 2653]
 gi|306407214|gb|EFM63424.1| histidine kinase [Brucella sp. NF 2653]
          Length = 859

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 66  GARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y    +       + I E R+LF  +
Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANA--SQVISEGRELFGAQ 303

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 304 ARQRLERGRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 842 TVICRFPSE 850


>gi|326539813|gb|ADZ88028.1| histidine kinase [Brucella melitensis M5-90]
          Length = 821

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 28  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 87

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 88  IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 147

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 148 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 207

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 208 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 265

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 266 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 325

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 326 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 385

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 386 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 445

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 446 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 505

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 506 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 563

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 564 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 623

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 624 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 683

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 684 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 743

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 744 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 803

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 804 TVICRFPSE 812


>gi|254713498|ref|ZP_05175309.1| histidine kinase [Brucella ceti M644/93/1]
 gi|254716146|ref|ZP_05177957.1| histidine kinase [Brucella ceti M13/05/1]
          Length = 859

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 66  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAV+G DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVYGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 842 TVICRFPSE 850


>gi|261217919|ref|ZP_05932200.1| histidine kinase [Brucella ceti M13/05/1]
 gi|261321231|ref|ZP_05960428.1| histidine kinase [Brucella ceti M644/93/1]
 gi|260923008|gb|EEX89576.1| histidine kinase [Brucella ceti M13/05/1]
 gi|261293921|gb|EEX97417.1| histidine kinase [Brucella ceti M644/93/1]
          Length = 843

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/789 (39%), Positives = 479/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 50  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 287

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAV+G DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVYGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 826 TVICRFPSE 834


>gi|261324039|ref|ZP_05963236.1| histidine kinase [Brucella neotomae 5K33]
 gi|261300019|gb|EEY03516.1| histidine kinase [Brucella neotomae 5K33]
          Length = 843

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 50  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 109

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 110 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 169

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 170 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 229

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y    +       + I E R+LF  +
Sbjct: 230 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYALAVDMANA--SQVISEGRELFGAQ 287

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 288 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 347

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 348 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 407

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 408 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 467

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 468 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 527

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 528 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 585

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 586 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 645

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 646 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 705

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 706 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 765

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 766 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 825

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 826 TVICRFPSE 834


>gi|256060062|ref|ZP_05450244.1| histidine kinase [Brucella neotomae 5K33]
          Length = 859

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 66  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y    +       + I E R+LF  +
Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYALAVDMANA--SQVISEGRELFGAQ 303

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 424 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 842 TVICRFPSE 850


>gi|163844116|ref|YP_001628520.1| histidine kinase [Brucella suis ATCC 23445]
 gi|163674839|gb|ABY38950.1| histidine kinase [Brucella suis ATCC 23445]
          Length = 859

 Score =  605 bits (1560), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 66  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 125

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 126 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 185

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 186 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 245

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 246 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 303

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 304 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 363

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 364 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 423

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y + E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 424 KLPEQPEWRKWKDSLLSAYCAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 483

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 484 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 543

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 544 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 601

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 602 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 661

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 662 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 721

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 722 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 781

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 782 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 841

Query: 783 TINCRIPSK 791
           T+ CR PS+
Sbjct: 842 TVICRFPSE 850


>gi|239833142|ref|ZP_04681471.1| histidine kinase [Ochrobactrum intermedium LMG 3301]
 gi|239825409|gb|EEQ96977.1| histidine kinase [Ochrobactrum intermedium LMG 3301]
          Length = 882

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 311/772 (40%), Positives = 469/772 (60%), Gaps = 13/772 (1%)

Query: 27  FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86
           F    G++   ++    LIR+R+ +A +  E  S  +++     +  +LL   +   +VW
Sbjct: 108 FSMFLGVMGAALLSAGWLIRERSRVAAENKELRSKFADLNLVAQRNEALLNLKDQRIVVW 167

Query: 87  DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146
           DG     E++G L      PQ  +  L+F  WL+    + L +A   LR++ +SFDL  E
Sbjct: 168 DGHSTRAEVVGLLPDESAAPQDRSAFLAFGRWLRPQSVVALERAIGLLREQARSFDLTVE 227

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
           T N   + + GR SG  A  R LSL G+ +E A    + ++ S  I +F+ L D +D  V
Sbjct: 228 TVNGTLLDVRGRTSGGFAVARFLSLQGVQAERAALQAQNREFSERIELFRRLLDRIDQPV 287

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           W RD  G + W N +Y +  +       + I E R+LF  + ++R+      E    E +
Sbjct: 288 WARDAGGRVEWVNAAYAQAVDMADA--SQVISEGRELFGAQARQRLERDRFAEPVLQEQL 345

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIF 322
           S + HG+ + + +  V    G  G+ +D+++   V ++L  T     E L  L+ A+AIF
Sbjct: 346 SAVVHGDRRLFNVTDVSAETGSIGLGVDLTEVQAVREELNRTLKSHAETLDQLSTAVAIF 405

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D    LQF N++F +LW +D A+L + PSN  +L+ LRS  KLPEQ  W+ WK+++ S Y
Sbjct: 406 DPEMKLQFFNQAFAKLWSLDTAWLESQPSNTLILDRLRSEGKLPEQPEWRKWKDSVLSAY 465

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           ++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + +LE +YNTL+KVQGET+DH
Sbjct: 466 RAVEPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLDH 525

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDL 499
           L+E VAVFG DGRI+LSNP+F  LW      +  GTHI +IA  CS    E  G   WD 
Sbjct: 526 LAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIAKICS----ERGGNGLWDD 581

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF++VTD+VR ERAL EKN
Sbjct: 582 FVSTVTGFLDKRDGRMGQVELDDGTILSFAVVPLPKGQTMLTFIDVTDTVRVERALKEKN 641

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSLN +Q +Y+++IS SS++
Sbjct: 642 EALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSLNERQIEYLDHISTSSSV 701

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL +VNDILDLATVDAGIM+L    + + + ++     +  +M +++I + +     +  
Sbjct: 702 LLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAAARVGERMRDHDIGLDIDIADDVDV 761

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F AD  R+ Q+   +LSNA +++ +GS++ L+ AR+  + +F+V ++G  +P ++  +VF
Sbjct: 762 FKADANRVRQVLFNLLSNATNYAPEGSSIRLQVAREGSEIVFAVHDDGPGMPGEVLDTVF 821

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF S  + G+RRG GLGL+IV+SF+ LHGG V I +     TT+ CR PS+
Sbjct: 822 KRFQSYPNGGRRRGAGLGLAIVKSFVELHGGSVDIDTGSGRGTTVICRFPSE 873


>gi|148560078|ref|YP_001259900.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|148371335|gb|ABQ61314.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840]
          Length = 837

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 311/789 (39%), Positives = 478/789 (60%), Gaps = 14/789 (1%)

Query: 13  GIEICTLFSCKIAVFGTIA-----GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICD 67
           G  I   F   +  F  I      G +   ++    LIR R+ +A + NE  S  +++  
Sbjct: 44  GARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANENNELRSKFADLNL 103

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
              +  +LL   +   +VWDG +   +++GQL      PQ     L+F  WL+      L
Sbjct: 104 IAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTAL 163

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+ +E A    + ++
Sbjct: 164 ERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRE 223

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ I + + L D ++   W RD  G I W N++Y +  +       + I E R+LF  +
Sbjct: 224 LADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANA--SQVISEGRELFGAQ 281

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            ++R+      E    E ++ + HG+ + + ++ V    G  G+  D+++   V D+L+ 
Sbjct: 282 ARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSR 341

Query: 308 TY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T PSN  + + LR+  
Sbjct: 342 TLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEG 401

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + 
Sbjct: 402 KLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKF 461

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW      +  GTHI  I
Sbjct: 462 ELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISII 521

Query: 484 AATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A  C++     DG W+ F + +T F D+R    G +EL   ++L ++++PLP  QTMLTF
Sbjct: 522 AKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLPKGQTMLTF 579

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSL
Sbjct: 580 IDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL 639

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     ++ ++
Sbjct: 640 NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERL 699

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L+ ARD  D +F+
Sbjct: 700 RDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVARDGADVVFA 759

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHGG V I + +E  T
Sbjct: 760 VHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGRVEIDTGEERGT 819

Query: 783 TINCRIPSK 791
           T+ C  PS+
Sbjct: 820 TVICHFPSE 828


>gi|17988310|ref|NP_540944.1| alkaline phosphatase synthesis sensor protein phoR [Brucella
           melitensis bv. 1 str. 16M]
 gi|17984083|gb|AAL53208.1| alkaline phosphatase synthesis sensor protein phor [Brucella
           melitensis bv. 1 str. 16M]
          Length = 768

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 306/753 (40%), Positives = 469/753 (62%), Gaps = 9/753 (1%)

Query: 44  LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI 103
           LIR R+ +A + NE  S  +++     +  +LL   +   +VWDG +   +++GQL    
Sbjct: 11  LIRDRSKIANENNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDAC 70

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSC 163
             PQ     L+F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  
Sbjct: 71  GAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGF 130

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
           A     SL G+ +E A    + ++L++ I + + L D ++   W RD  G I W N++Y 
Sbjct: 131 AVACFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYA 190

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
           +  +       + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V 
Sbjct: 191 QAVDMANA--SQVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVS 248

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
              G  G+  D+++   V D+L+ T     E L  L+ A+AIFD    LQF N++FV+LW
Sbjct: 249 AESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLW 308

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
            +D+A+L T PSN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T
Sbjct: 309 GLDVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRT 368

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           + V+   +P+GG  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LS
Sbjct: 369 MRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLS 428

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTL 518
           NP+F +LW      +  GTHI  IA  C++     DG W+ F + +T F D+R    G +
Sbjct: 429 NPSFAALWSLPSEMVREGTHISIIAKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQV 486

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           EL   ++L ++++PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSY
Sbjct: 487 ELSDGAILSFAVVPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSY 546

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELRSPLTNIIGFT+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM
Sbjct: 547 ELRSPLTNIIGFTELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIM 606

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L    + + + ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA
Sbjct: 607 ELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNA 666

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           ++++ +GS ++L+ ARD  D +F+V ++G  +P ++  +VF RF S  + G+RRG GLGL
Sbjct: 667 VNYAPEGSNIVLQVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGL 726

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +IV+SF+ LHGG V I + +E  TT+ CR PS+
Sbjct: 727 AIVKSFVELHGGRVEIDTGEERGTTVICRFPSE 759


>gi|153008157|ref|YP_001369372.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
 gi|151560045|gb|ABS13543.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
          Length = 858

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/773 (40%), Positives = 467/773 (60%), Gaps = 15/773 (1%)

Query: 27  FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86
           F    G++   ++    LIR+R+ +A +  E  S  +++     +  +LL   +   +VW
Sbjct: 84  FSMFLGVMGAALLSAGWLIRERSRVAAENKELRSKFADLNLVAQRNEALLNLKDQRIVVW 143

Query: 87  DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146
           DG     E++G L      PQ  +  L+F  WL+    + L +A   LR++ +SFDL  E
Sbjct: 144 DGHSTRAEVVGLLPDDSAAPQDRSTFLAFGRWLRPQSVVALERAIGMLREQARSFDLTVE 203

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
           T N   + + GR SG  A  R LSL G+ +E A    + ++ S  I +F+ L D +D  V
Sbjct: 204 TVNGTLLDVRGRTSGGFAVARFLSLQGVQAERAALQAQNREFSERIELFRRLLDRIDQPV 263

Query: 207 WHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
           W RD  G + W N +Y +  +  +G    + I E R+LF  + ++R+      E    E 
Sbjct: 264 WTRDAGGRVEWVNAAYAQAVDMADG---SQVISEGRELFGAQARQRLERDRFAEPVLQEQ 320

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAI 321
           ++ + HG+ + + +  V    G  G+  D ++   V ++L  T     E L  L+ A+AI
Sbjct: 321 LTAVVHGDRRLFNVTDVSAETGSVGLGFDQTEVQAVREELNRTMKSHAETLDQLSTAVAI 380

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           FD    LQF N++F +LW +D A+L + PSN  +L+ LRS  KLPEQ  W+ WK+++ S 
Sbjct: 381 FDPEMKLQFFNQAFAKLWSLDTAWLESQPSNTLILDRLRSEGKLPEQPEWRKWKDSVLSA 440

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+T + +LE +YNTL+KVQGET+D
Sbjct: 441 YRAVEPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLD 500

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WD 498
           HL+E VAVFG DGRI+LSNP+F  LW      +  GTHI +IA  C     E  G   WD
Sbjct: 501 HLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIARIC----GERGGNGLWD 556

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
            F + +T F D R    G +EL   ++L ++++PLP  QTMLTF++VTD+VR ERAL EK
Sbjct: 557 DFVSTVTGFLDTRDGRMGQVELDDGTILSFAVVPLPKGQTMLTFIDVTDTVRVERALKEK 616

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           NEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   GSLN +Q +Y+++IS SS+
Sbjct: 617 NEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSLNERQIEYLDHISTSSS 676

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL +VNDILDLATVDAGIM+L    + + + ++     +  +M +++I + +     + 
Sbjct: 677 VLLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAASRVGERMRDHDIGLDIDIADDVD 736

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F AD  R+ Q+   +LSNA +++ +GS++ L+ AR+  + +F+V ++G  +P ++  +V
Sbjct: 737 VFKADANRVRQVLFNLLSNATNYAPEGSSIQLQVAREGSEVVFAVHDDGPGMPGEVLDTV 796

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF S  + G+RRG GLGL+IV+SF+ LHGG V I +     TT+ CR PS+
Sbjct: 797 FKRFQSYPNGGRRRGAGLGLAIVKSFVELHGGSVDIDTGSGRGTTVICRFPSE 849


>gi|110635903|ref|YP_676111.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110286887|gb|ABG64946.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 843

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 324/786 (41%), Positives = 465/786 (59%), Gaps = 21/786 (2%)

Query: 13  GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72
           G+ I T+   +++VF   AG+L    +  I LIR+R   A +  E  + ++E+   LS+ 
Sbjct: 59  GLSISTIEVIQLSVF---AGVLGAAFLSAIWLIRERGRTASENTELKNRMAELSGALSRA 115

Query: 73  HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132
            +LL   +   IVW G ++ P ++G L     +P   +  L+F  WL       L +AT 
Sbjct: 116 EALLNLKDQRIIVWQG-NQRPIVLGDLSPESGVPHDRSTFLAFGRWLTPRSASALDRATA 174

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL-SNH 191
            LR+ G +FDLVAET+     +++GR S   A +R LSL    +E A   L  ++L ++H
Sbjct: 175 ALREAGTAFDLVAETREGLLFEVQGRKSALHAIVRFLSLSAAQAENARLKLDHQRLQADH 234

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
            S+   L ++L+   W RD+AG + W N +Y +  E +      A  E R+L     +  
Sbjct: 235 ESILG-LINALEMPFWLRDEAGRLKWVNSAYAQMVEAKDP--SAAAAEGRELLPSSARAA 291

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE- 310
           +      +  F E +ST+  G+ + + +    +  G AGIA+D S      D L   YE 
Sbjct: 292 VAQHHQEQPVFREPLSTVVGGDRRLFAVTDYASQKGSAGIALDTSD----VDALRREYES 347

Query: 311 -------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
                   L  LT A+AIFD ++ L+F+N++F +LW +D  FL   P    LL+ LRS  
Sbjct: 348 TLRSHADTLDQLTTAVAIFDADQKLKFYNQAFQKLWALDAGFLDAGPEYALLLDRLRSDG 407

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KL EQ  W+ WKE + S Y++ E  +  WHLP+G+T+ V+ T   +GG  W+FENLT ++
Sbjct: 408 KLAEQPEWRRWKEQLLSAYRAVEPQEHWWHLPDGRTIRVVATPQSKGGVTWVFENLTEKI 467

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           DLE++YN +VKVQ ET+D+L+EGVAVFGPDGR++LSNPAFR+LW   E  + P  HI  +
Sbjct: 468 DLESRYNAVVKVQRETLDNLAEGVAVFGPDGRLRLSNPAFRTLWGIPEKLIGPDIHISIL 527

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A C     ES  W  F   +T FDDER+   G  EL++ + L Y+I+ LPN Q MLTFV
Sbjct: 528 KAACDPVAMESP-WAEFVGAVTGFDDERRDKHGRTELINGAALHYAIVHLPNGQVMLTFV 586

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTDSV  ERAL EKNEAL KAD +KN FVQHVSYELRSPLTNIIGFT+LL     G LN
Sbjct: 587 DVTDSVNVERALKEKNEALEKADRLKNDFVQHVSYELRSPLTNIIGFTELLGQETTGPLN 646

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV++I +SS++LL +VNDILDLATVDAGIM+L    + +  L+      +A ++ 
Sbjct: 647 PRQREYVDHIGSSSSLLLTIVNDILDLATVDAGIMELEIGEVEIRPLVKAATDLVADRLR 706

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E+ IR++V  D    SF AD  R+ QI   +LSNA +++ +G  + L A+       F V
Sbjct: 707 EHRIRLEVTVDAAPVSFHADENRIRQILYNLLSNAANYAPEGGKITLSASGTGNAIEFRV 766

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            +NG  +  ++  ++F RF  +A  G+RRG GLGL+IV+SF+ LHGG V I ++    T 
Sbjct: 767 HDNGPGMSPEVLATIFKRFEPSAKGGRRRGAGLGLAIVKSFVELHGGTVDIDTAPGRGTA 826

Query: 784 INCRIP 789
           + CR P
Sbjct: 827 VTCRFP 832


>gi|319780208|ref|YP_004139684.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166096|gb|ADV09634.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 851

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 305/781 (39%), Positives = 453/781 (58%), Gaps = 10/781 (1%)

Query: 13  GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72
           G+ +  +   ++AVF  + G  L   I  I+LIR+R   + +  E  S L++I   L + 
Sbjct: 67  GLSVSAIDVMQLAVFVGVTGAAL---ISAIVLIRERARTSAENVELRSRLADINAALRRS 123

Query: 73  HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132
            +LL   +   +VW  +++ PE+IG L      P+     L+F  WL       L  A  
Sbjct: 124 EALLNLRDQRVVVWAAENKKPELIGTLPVESGAPEDRAAFLAFGRWLMPRSAAALEHAVA 183

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
            LR++ + FDLV E+Q    +++ GR S +   +R LSL       A   ++ ++L+   
Sbjct: 184 GLREKAKPFDLVIESQAGAPLEVHGRKSAAHVLVRFLSLSETQRSQARLKIENQRLAADH 243

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
                L D+L+   W R + G + W N +Y    E E           ++    + +  +
Sbjct: 244 DTMIGLLDALNMPAWLRGEDGGLKWVNRAYADAVEAENAEAAVRE--KKEFLGGQARDAI 301

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY--- 309
            +       F +++ST+  G+ + + +     S G AG+A D S    V  +   T    
Sbjct: 302 AAQHRTHPVFEQSLSTVIEGDRRVFAVTDFAGSDGSAGLACDTSAIEAVRGEYERTVRSH 361

Query: 310 -EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            + L  L  A+AIFD +  L+F N++F +LW ++  FL + P N  LL+ LRS  K+ EQ
Sbjct: 362 ADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLEAGFLHSAPDNALLLDRLRSEGKIAEQ 421

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
             W+ WKE +   Y++ E+ +  WHLP+G+T+ V+    P+GG  W+FENLT ++DLE++
Sbjct: 422 PEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLESR 481

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           Y T V+VQGET+D+L+EGVAVFGPDGR++LSNPAF +LW        P  H+  I   C 
Sbjct: 482 YQTAVRVQGETLDNLAEGVAVFGPDGRLRLSNPAFATLWGLSGEAAKPSVHVSTIRDLCD 541

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R   +S  W  F A +T FDDER+   G  EL + +VL Y++IPLPN Q M+TFV+VTDS
Sbjct: 542 RQAADSP-WPGFVAAVTGFDDERRDRHGQTELNNGNVLSYAMIPLPNGQVMMTFVDVTDS 600

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  ERAL +KNEAL+K+D++KN FVQHVSYELRSPLTNIIGFT+LL     G L  KQ +
Sbjct: 601 VHVERALKDKNEALQKSDQLKNEFVQHVSYELRSPLTNIIGFTELLSQPTTGPLTQKQRE 660

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YVE++S+SS +LL +VNDILDLATVDAGIM+L+ S + ++  +    + +A ++ E++IR
Sbjct: 661 YVEHVSSSSAVLLTIVNDILDLATVDAGIMQLDISEVQVDRTIAAAAELVADRLEEHSIR 720

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++V +     +F  D  R+ QI   +LSNA +++ + ST+ L          FSV ++G 
Sbjct: 721 LEVEAASAPKTFHGDEVRVRQILYNLLSNAANYAPEASTIRLTCRHLADGVEFSVHDDGP 780

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +P D+  SVF RF   A+ G+RRG GLGLSIV+SF+ LHGG V I +  +  TT+ C  
Sbjct: 781 GMPPDVLDSVFRRFEPRANGGRRRGAGLGLSIVKSFVELHGGSVRIETGKDKGTTVICTF 840

Query: 789 P 789
           P
Sbjct: 841 P 841


>gi|260463220|ref|ZP_05811422.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031070|gb|EEW32344.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
          Length = 851

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 305/782 (39%), Positives = 465/782 (59%), Gaps = 12/782 (1%)

Query: 13  GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72
           G+ I T+   ++AVF  + G   T  +  I+LIR+R   + +  E  S ++++   L + 
Sbjct: 67  GLSISTIEVMQLAVFVGVTG---TAFLSAIVLIRERARTSAENVELRSRVADVNAALRRS 123

Query: 73  HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132
            +LL   +   IVW  +++ PE++G L      P+     L+F  WL       L  A  
Sbjct: 124 EALLNLRDQRVIVWASENKKPELVGILPVESGAPEERAAFLAFGRWLMPRSAAALEHAIA 183

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
            LR++ + FDLV E+Q    +++ GR S +   +R +SL       A   ++  +L+   
Sbjct: 184 ALREKARPFDLVIESQAGAPLEVHGRKSAAHVLVRFVSLSETQRSQARLKIENHRLAADH 243

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
                L ++L    W RD+ G + W N +Y    E      + A+ ++++    + ++ +
Sbjct: 244 DTMIGLLEALKMPAWLRDEHGRLKWVNRAYADAVEA--ESAEAAVRDAKEFLGGQAREAI 301

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY--- 309
            +   L   F +++ST+  G+ + + +    ++ G AG+A D S   ++  +   T    
Sbjct: 302 EAQHKLHPVFEQSLSTVIEGDRRVFAVTDFASADGSAGLACDTSAIESIRGEYERTVRSH 361

Query: 310 -EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            + L  L  A+AIFD +  L+F N++F +LW +D  FL + P N  LL+ LRS  K+ EQ
Sbjct: 362 ADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDSGFLHSAPDNALLLDRLRSEGKIAEQ 421

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
             W+ WKE +   Y++ E+ +  WHLP+G+T+ V+    P+GG  W+FENLT ++DLE++
Sbjct: 422 PEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLESR 481

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           Y T V+VQGET+D+L+EGVAVFGPDG+++LSNPAF +LW  +     P  H+  I   C 
Sbjct: 482 YRTAVRVQGETLDNLAEGVAVFGPDGKLRLSNPAFATLWGLDAEATKPNVHVSTIRDLCD 541

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R   +S  W  F A IT FDDER+   G  EL + +VL Y++IPLPN Q M+TFV+VTD 
Sbjct: 542 RQAVDSP-WPSFVAAITGFDDERRDRHGQTELNNGTVLRYAMIPLPNGQVMMTFVDVTDG 600

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           VR ERAL +KNEAL K+D++KN FVQHVSYELRSPLTNIIGFT+LL     G L  KQ +
Sbjct: 601 VRVERALKDKNEALEKSDQLKNDFVQHVSYELRSPLTNIIGFTELLSLPTTGPLTQKQRE 660

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YVE++ +SS++LL +VNDILDLATVDAGIM+L+ S + ++  +    + +A ++ E++IR
Sbjct: 661 YVEHVGSSSSVLLTIVNDILDLATVDAGIMQLDISEVHVDRTIAAAAELVADRLQEHSIR 720

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           ++V +     +F  D  R+ QI   +LSNA +++ + ST+ L A R   D + FSV ++G
Sbjct: 721 LEVDAKAAPKTFHGDETRIRQILYNLLSNAANYAPEASTIRL-ACRHLADGVEFSVHDDG 779

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +P D+  SVF RF   A+ G+RRG GLGLSIV+SF+ LHGG V I +  +  TT+ C 
Sbjct: 780 PGMPPDVLDSVFRRFEPRANGGRRRGAGLGLSIVKSFVELHGGGVRIETGKDKGTTVICT 839

Query: 788 IP 789
            P
Sbjct: 840 FP 841


>gi|307942838|ref|ZP_07658183.1| multi-sensor signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
 gi|307773634|gb|EFO32850.1| multi-sensor signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
          Length = 812

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/772 (36%), Positives = 448/772 (58%), Gaps = 6/772 (0%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           + + G   GM    I   +  +RQR +        +   SE+  ++ +  S+L  +    
Sbjct: 33  MMLLGAFGGMCAFAITASVAYLRQRRAAGALCEHLHREKSELKLRVDRLESMLNSDEQRI 92

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           +VW G    P++ G L ++  +P+    LL+F +WL       L +  + L   G++F  
Sbjct: 93  VVWTGSGNAPQVWGVLPEQSGVPRATNQLLAFGSWLSAKCASDLERRLDALFSTGETFTT 152

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T+    ++  GR +G    LR+  + G     AE + +  K+S  + +   L D+L 
Sbjct: 153 TLTTRVGTFVEAIGRTTGGAVVLRLRDMTGERQIQAEISARNAKISGELHMLHSLLDALP 212

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
              W RD  G ++W N +Y   T  +    + AI E         +     +   +  F 
Sbjct: 213 SPAWQRDAEGKLIWVNQAYA--TAIDAPDQKAAIKEGDDFLDSAARDAAGKNRNEDGCFT 270

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI----LHNLTVAI 319
             +  +  G  + +++  V  + G AG+AID+S+   V  +L+   E     L  L  A+
Sbjct: 271 ARIPMVAAGERRVFEVTDVAANVGGAGVAIDISELDQVRRELSRAEEFHGRTLDQLVTAV 330

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AI+  +R LQFHN +F +LWE++  FL ++P +  +L+ LR+A KLPEQ +++ W+  + 
Sbjct: 331 AIYGGDRKLQFHNEAFRQLWELEPVFLESSPEDGAVLDALRAARKLPEQADYRVWRNTML 390

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+S ET +  WHLP+G+TL V+ + +P+GG I+++EN+T ++DLE++YN L++VQGET
Sbjct: 391 ESYQSVETKEHWWHLPDGRTLRVVASPHPQGGVIYIYENVTERLDLESRYNALIRVQGET 450

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++LSE VAVFG DGR++L NPAF  +W  EE+RLS   H+  + +TC+    E + WD 
Sbjct: 451 LENLSEAVAVFGSDGRLRLWNPAFSRIWNFEEDRLSQLPHVNQLESTCALSPAEQEAWDR 510

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            +A +TS  + R  +   +E    +VL+Y+ +PLP+  T++TFV+VTDSV  ERAL EKN
Sbjct: 511 LSANVTSLLENRTPVANRMERHDGAVLDYATVPLPDGGTLVTFVDVTDSVNVERALVEKN 570

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL +ADE+KN+F+QHVSYELRSPLTNIIGF  LL   K G L+ KQ +Y +YI +SS+ 
Sbjct: 571 EALEQADELKNAFIQHVSYELRSPLTNIIGFAQLLTDPKFGDLSEKQGEYADYIRSSSSA 630

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++NDILDLAT+DAGIM+L  S + +   +    + +  ++ E+ I ++      +GS
Sbjct: 631 LLAIINDILDLATLDAGIMELELSEVDVAATVEAAVEGLKDRLAESRINLRTDVPDNIGS 690

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            VAD +RL Q+   ++SNA+ +S +   V +   R +    F VK++G  IP D+   VF
Sbjct: 691 MVADEKRLRQVLYNLISNAVRYSEEEGVVDVVCNRKDEAVEFVVKDHGCGIPADILTQVF 750

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           NRFV +    +R+G GLGLSIV+SF+ LHGG V I+S +   TT+ C  P+K
Sbjct: 751 NRFVGHNAGARRQGAGLGLSIVKSFVELHGGKVDINSVEGKGTTVTCSFPAK 802


>gi|118590595|ref|ZP_01547997.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM
           12614]
 gi|118437058|gb|EAV43697.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM
           12614]
          Length = 814

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 277/770 (35%), Positives = 442/770 (57%), Gaps = 6/770 (0%)

Query: 26  VFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV 85
           +FG + GM    +   + L+R R       +      S++  ++ +  ++L  +    IV
Sbjct: 37  LFGALGGMCAFAVTASVALVRHRKQSGLLTDALEKEKSDLKFRVDRLEAMLNTDEQRVIV 96

Query: 86  WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVA 145
           W G    P+I G L ++  +P+    LL+F +WL       L +  + L + G++F    
Sbjct: 97  WTGNGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDMLFRTGEAFTTTL 156

Query: 146 ETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL 205
           +T+    ++  GR +G    LR+  L G     AE   +  K+S  + +   L D++   
Sbjct: 157 KTRTGTYVEALGRTTGGAVVLRLRDLTGERQMQAELAARNAKISGELHMLHALLDAMPAP 216

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
            W RD  G+++WAN +Y +  +        A+ E         +  M      +  F   
Sbjct: 217 AWQRDAEGNLIWANQAYAEAVDMTDADL--AVKEGASFLDAAARTAMAVQRTEDGCFNAR 274

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI----LHNLTVAIAI 321
           +  +  G  + +++  V  + G AGIA+D+S+      +L    E     L  L  A+AI
Sbjct: 275 IPIVASGERRVFEVTDVNANVGGAGIAVDISELEQAQKELGRAEEFHGRTLDQLAAAVAI 334

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           +  +R LQF+N +F +LW++D AFL + P +  +L+ LR+A K+PEQ +++ W+  +   
Sbjct: 335 YSADRKLQFYNAAFRQLWDLDPAFLESRPEDSAVLDALRAARKIPEQADYRVWRNKMMES 394

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y+S E  +  WHLP+G+TL VI   +P+GG  +++EN+T Q+DLE++YN L +VQGET+D
Sbjct: 395 YQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTEQLDLESRYNALTRVQGETLD 454

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           +LSE VAVFG DGR++L NPAF  +W  EE++L+   H++ + + C+    E D W+  A
Sbjct: 455 NLSEAVAVFGSDGRLRLWNPAFGRIWGLEEDQLTELPHVKEVVSACTLSETERDAWEQLA 514

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             +T   D R      LE  +  V++Y+ +PLP+  T++TFV+VTDSV  ERAL EKNEA
Sbjct: 515 GNVTGLLDNRTQKVSRLERHNGDVVDYATVPLPDGGTLVTFVDVTDSVNVERALLEKNEA 574

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +AD+IKN+F+QHVSYELRSPLTNIIGF  LL   K G L+ KQS+Y +YI +SS+ LL
Sbjct: 575 LEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGELSDKQSEYADYIQSSSSALL 634

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILDLAT+DAGIM+L+   + +   +    + +  ++ E  I ++    G +G  V
Sbjct: 635 AIINDILDLATLDAGIMELDLGEVDVAPTVAAAVEGLKDRIAEARINLRTHVPGDIGMMV 694

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +RL Q+   ++SNA+ +S     V +  +R++    F V+++G  IP ++   VFNR
Sbjct: 695 ADEKRLRQVLFNLISNAVRYSEPDGVVDVSCSREDDKVTFVVQDHGYGIPAEILTQVFNR 754

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           FV +    +R+G GLGL+IV+SF+ LHGG V I S++   TT+ C  P++
Sbjct: 755 FVGHDTGSRRQGAGLGLAIVKSFVELHGGTVDIQSAEGKGTTVTCVFPAR 804


>gi|254470855|ref|ZP_05084258.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio
           sp. JE062]
 gi|211959997|gb|EEA95194.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio
           sp. JE062]
          Length = 817

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 285/799 (35%), Positives = 454/799 (56%), Gaps = 12/799 (1%)

Query: 1   MMAGMATIGIGKGIEICTLFSC------KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A +   G  + ++I    S       K+      AG+ L  +   ++L+R R + +  
Sbjct: 9   VFALLGAAGFSQAMDILPALSGSSVDAFKVVWVAATAGIALYAVAASVVLVRIRRNDSLS 68

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
           + +     ++   ++ +  SLL   + L +VWDG+ + P + G L + +++    + L+ 
Sbjct: 69  ILQLRQDRADAMARIDRLESLLETEDSLLLVWDGEAKHPGVAGHLPENLELSGGLSQLVE 128

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           FE WL       L    E LR  G+ F L   T +   ++  G  +G  A LR+  L G 
Sbjct: 129 FETWLDVKSAEALRAFLEHLRGHGEVFRLTLTTIDGVYLEASGHTAGGLAVLRLRDLTGD 188

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
               A  + + K+L   IS    L D+L    W RD  G ++W N +Y    E E    +
Sbjct: 189 RQLSARLSEQNKELREQISSLHSLLDALPGPAWQRDHHGQLVWVNTAYVDAVEAEST--R 246

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
             + +  +L + + + ++      +  +   +  +  G  + +++  V +  G AG+A D
Sbjct: 247 TVVDDQIELLEAKGRNKLNMMRQTDGVYHSPMPVVAAGERRVFELTDVNSEHGNAGLAQD 306

Query: 295 VSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +S+   V  QL  T E     L  L   +A+F  +  LQF+N ++  LW+ID +FL T P
Sbjct: 307 ISELERVQGQLRRTLESHTRTLDQLQTPVAVFGADHRLQFYNAAYRSLWDIDQSFLETKP 366

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              ELL+ LR+A KLPEQ +++ W+      Y++ +     WHLP+G+TL VI + +P+G
Sbjct: 367 EEGELLDALRAARKLPEQADYRGWRTKHLECYQALDAQAFWWHLPDGRTLRVIASPHPQG 426

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  + +EN+T Q+DLE+++N L +VQ ET+DHL+E VAVFG +GR++LSNPAF  +W   
Sbjct: 427 GVTYFYENVTEQLDLESRFNALTRVQRETLDHLTEAVAVFGSNGRMRLSNPAFAEIWGLS 486

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           +  L    H+ ++   C     +SD W   A  +T   D R S+ G +E +  SV++Y  
Sbjct: 487 QEFLEGAPHVNDLLDNCRELMGDSDRWQELARGVTGLSDNRTSVSGRMERIDGSVIDYVT 546

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP+  T+LTFVNVTD+V  ERAL   N+AL++AD++KN+F+QHVSYELRSPLT IIGF
Sbjct: 547 VPLPDGGTLLTFVNVTDTVNVERALHATNDALQEADQLKNAFIQHVSYELRSPLTTIIGF 606

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL  +K G L+ KQ +Y +YI +SS+ LL+++NDILDLATVDAGIM+L  S + +   
Sbjct: 607 AQLLGDAKFGDLSPKQEEYTDYILSSSSALLHIINDILDLATVDAGIMELEISEVDVAQT 666

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++E  + +  ++ E++I ++      +G   AD +RL Q+   +LSNA+ +S KG  V +
Sbjct: 667 VSEAVEGLKDRLVESDITLRTHMPDDIGILKADERRLRQVLFNLLSNAIRYSDKGGLVDI 726

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
              R+  +  F +K++G+ IP++M + VF+RFV     G R+GVGLGLSIV+SF+ LHGG
Sbjct: 727 SCQREENEIRFRIKDHGAGIPQEMLEQVFSRFVGRGAGGNRQGVGLGLSIVKSFVELHGG 786

Query: 771 HVSISSSDEGVTTINCRIP 789
            V I+S +   TT++C  P
Sbjct: 787 TVDITSEEGQGTTVDCTFP 805


>gi|254501085|ref|ZP_05113236.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11]
 gi|222437156|gb|EEE43835.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11]
          Length = 837

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/771 (36%), Positives = 437/771 (56%), Gaps = 6/771 (0%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           + +FG + GM    +   I L+R R    +          ++  ++ +  ++L  +    
Sbjct: 58  MVMFGALGGMCAFAVTAAIALVRHRAQSGQLTEALEQEKRDLKFRVDRLETMLNTDEQRV 117

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           IVW G    P+I G L ++  +P+    LL+F +WL       L +  + L + G++F+ 
Sbjct: 118 IVWTGNGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGETFNT 177

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
             +T+    ++  GR +G    LR+  L G     AE   +  K+S  + +   L D++ 
Sbjct: 178 TLKTRTGSYVEALGRTTGGAVVLRLRDLTGERQAQAELQTRNAKISGELHMLHALLDAMP 237

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
              W RD  G+++WAN +Y +  E      Q A+ E         +  M      +  F 
Sbjct: 238 APAWQRDAEGNVIWANDAYAEAVEMPDA--QAAVKEGATFLDAAARTAMAVQRNEDGCFS 295

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI----LHNLTVAI 319
             +  +  G  + ++I  V  + G AGIA+D+S+      +L    E     L  L  A+
Sbjct: 296 ARIPIVASGQRRVFEITDVNANVGGAGIAVDISELEQAQKELGRAEEFHGRTLDQLAAAV 355

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AI+  +R LQF+N +F +LW++D A L ++P +  +L+ LR+A KLPEQ +++ W+  + 
Sbjct: 356 AIYSGDRKLQFYNAAFRQLWDLDPALLESHPEDGAVLDALRAARKLPEQADYRGWRNKML 415

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+S E  +  WHLP+G+TL VI   +P+GG  +++EN+T Q+DLE++YN L +VQGET
Sbjct: 416 EGYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTEQLDLESRYNALTRVQGET 475

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D+LSE VAVFG DG+++L NPAF  +W  EE +LS   H+  + + C+    E   W+ 
Sbjct: 476 LDNLSEAVAVFGSDGKLRLWNPAFGRIWDLEEEQLSRFPHVNEVVSACALNDYEKTAWEQ 535

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A+ +T   D R      LE  + +VL+Y+ +PLP+  T++TFV+VTDSV  ERAL EKN
Sbjct: 536 LASSVTGLVDNRTQNVSRLERHNGAVLDYATVPLPDGGTLVTFVDVTDSVNVERALLEKN 595

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL +AD+IKN+F+QHVSYELRSPLTNIIGF  LL   K G L  KQ +Y +YI +SS+ 
Sbjct: 596 EALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGDLTEKQGEYADYIQSSSSA 655

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++NDILDLAT+DAGIM+L+   + L   +    + +  ++ E  I ++      +G+
Sbjct: 656 LLAIINDILDLATLDAGIMELDLREVDLASTVEAAVEGLKDRIAEARINLRTQVPDNIGN 715

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD +RL Q+   ++SNA+ +S     V +   RD+    F V+++G  IP ++   VF
Sbjct: 716 MIADEKRLRQVLFNLISNAVRYSEPDGVVDISCDRDDDKVTFVVQDHGLGIPAEILTQVF 775

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           NRFV +    +R+G GLGL+IV+SF+ LHGG V I S     TT+ C  P+
Sbjct: 776 NRFVGHDTGARRQGAGLGLAIVKSFVELHGGTVDIDSVVGKGTTVTCVFPA 826


>gi|13474243|ref|NP_105811.1| two-component sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
 gi|14024995|dbj|BAB51597.1| two-component sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
          Length = 851

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 308/782 (39%), Positives = 464/782 (59%), Gaps = 12/782 (1%)

Query: 13  GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72
           G+ I T+   ++AVF  + G      +  I+LIR+R   + +  E  S +++I   L + 
Sbjct: 67  GLSINTVEVMQLAVFVGVTG---AAFLSAIVLIRERARTSAENVELRSRVADINAALRRS 123

Query: 73  HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132
            +LL   +   +VW  +++ PE+IG L      P+  +  L+F  WL       L  A  
Sbjct: 124 EALLNLRDQRVVVWASENKKPELIGTLPVESGAPEERSAFLAFGRWLMPRSAAALEHAIA 183

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
            LR++ + FDLV E+Q    +++ GR S +   +R +SL       A   +  ++L+   
Sbjct: 184 GLREKARPFDLVIESQAGAPLEVHGRKSAAHILVRFVSLSETQRSQARLKIDNQRLAADH 243

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
                L ++L    W RD+ G + W N +Y    E      + A+ ++R+    + ++ +
Sbjct: 244 DTMIGLLEALKMPAWLRDEHGRLKWVNRAYADAVEA--ESAEAAVRDAREFLGGQAREAI 301

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY--- 309
            +       F +++ST+  G+ + + +    +  G AG+A D S    +  +   T    
Sbjct: 302 DAQHKTHPVFEQSLSTVIEGDRRVFAVTDFASPDGSAGLAADTSAIEAIRGEYERTVRSH 361

Query: 310 -EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            + L  L  A+AIFD +  L+F N++F +LW +D  FL + P N  LL+ LRS  K+ EQ
Sbjct: 362 ADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDSGFLHSAPDNALLLDRLRSEGKIAEQ 421

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
             W+ WKE +   Y++ E+ +  WHLP+G+T+ V+    P+GG  W+FENLT ++DLE++
Sbjct: 422 PEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLESR 481

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           Y T V+VQGET+D+L+EGVAVFGPDGR++LSNPAF +LW        P  H+  I   C 
Sbjct: 482 YRTAVRVQGETLDNLAEGVAVFGPDGRLRLSNPAFATLWGLSGEAAKPNVHVSTIRDLCD 541

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R   +S  W  F A IT FDDER+   G  EL + +VL Y++IPLPN Q M+TFV+VTDS
Sbjct: 542 RQAVDSP-WPGFVAAITGFDDERRDRHGQSELNNGTVLRYAVIPLPNGQVMMTFVDVTDS 600

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  ERAL +KNEAL K+D++KN FVQHVSYELRSPLTNIIGFT+LL     G LN KQ +
Sbjct: 601 VHVERALKDKNEALEKSDQLKNDFVQHVSYELRSPLTNIIGFTELLSLPTTGPLNQKQRE 660

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YVE++S+SS++LL +VNDILDLATVDAGIM+L+ S + ++  +    + +A ++ E++IR
Sbjct: 661 YVEHVSSSSSVLLTIVNDILDLATVDAGIMQLDISEVHVDRTIAAAAELVADRLQEHSIR 720

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           ++V +     +F  D  R+ QI   +LSNA +++ + ST+ L A R   D + FSV ++G
Sbjct: 721 LEVDARAAPKTFHGDEIRIRQILYNLLSNAANYAPEASTIRL-ACRHLADGVEFSVHDDG 779

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +P D+  SVF RF   A+ G+RRG GLGLSIV+SF+ LHGG+V I +  +  TT+ C 
Sbjct: 780 PGMPPDVLDSVFRRFEPRANGGRRRGAGLGLSIVKSFVELHGGNVRIETGKDKGTTVICT 839

Query: 788 IP 789
            P
Sbjct: 840 FP 841


>gi|328545814|ref|YP_004305923.1| Alkaline phosphatase synthesis sensor protein phor [polymorphum
           gilvum SL003B-26A1]
 gi|326415554|gb|ADZ72617.1| Alkaline phosphatase synthesis sensor protein phor [Polymorphum
           gilvum SL003B-26A1]
          Length = 807

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/801 (35%), Positives = 446/801 (55%), Gaps = 22/801 (2%)

Query: 2   MAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
           +A  +T+     +    L + KI   G + G     +   +  +R R +   ++      
Sbjct: 6   LACQSTLAAAAPLAEIGLSADKIVWLGALGGACAFAVTAAVAFLRTRRAGDVRMEALARE 65

Query: 62  LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121
             ++   + +  S+L       I W G ++ P + G + +    P+    LL+F +WL+ 
Sbjct: 66  SRDLRLYVDRLESMLNTEEQRMIAWVGAEDRPRVWGVMPESSGAPRAPGQLLAFGSWLEP 125

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
                L     +LR  G +F +   T+    ++  GR +G  A LR+  L G     AE 
Sbjct: 126 KSAEVLEAHLGRLRSAGDAFAVTLTTRKRTYVEAVGRTAGGVAVLRLRDLTGERQAQAEL 185

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--------EGIVF 233
             +  +LS  + +   L +++    W RD  G + WAN +Y    +         + + F
Sbjct: 186 AARNARLSGELHMLHALLEAMPAPAWQRDAEGRVTWANSAYACAVDVADAATAVRDNVDF 245

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
             A G          ++ M      +  F   +  +  G  + +++  V  + G A +AI
Sbjct: 246 LDAAG----------REAMSRDRDDDGCFRARMPIVAAGERRVFEVTDVSANVGGAALAI 295

Query: 294 DVSKEITVNDQLTHTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+S+   +  +L  T E     L  L  A+AI+  +R LQF+N +F  LW +D AFL   
Sbjct: 296 DISELDRLKKELRRTEEFHGSTLDQLATAVAIYGGDRKLQFYNSAFRALWNLDTAFLDGR 355

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           P +  +L+ LR+A KLPEQ +++ W+  +   Y+S E  +  WHLP+G+TL VI   +P+
Sbjct: 356 PEDGAVLDALRAARKLPEQADYRVWRTKMLESYQSLEARESWWHLPDGRTLRVIANPHPQ 415

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GG  +++EN+T ++DLE++YN L++VQGET+D+LSE VAVFG DGR++L NPAF S+W  
Sbjct: 416 GGVTYIYENVTERLDLESRYNALIRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGSIWDL 475

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            E++L+   HI ++   C+   +E   W   A  +T   D R  L G +E    +VL+Y+
Sbjct: 476 PEDQLANMPHINDVVEWCAARPDEVQAWSQLAGSVTGLVDSRTHLAGRMERRDGTVLDYA 535

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +PLP+  T++TFVNVTDSV  ERAL EKNEAL +AD++KN+F+QHVSYELRSPLTNIIG
Sbjct: 536 TVPLPDGGTLVTFVNVTDSVNVERALVEKNEALEQADQLKNAFIQHVSYELRSPLTNIIG 595

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  LL   K G L+ KQ +Y +YI +SS+ LL ++NDILDLAT+DAGIM+L+   + + D
Sbjct: 596 FAQLLSDPKFGELSRKQGEYADYILSSSSALLAIINDILDLATIDAGIMELDLGEVDVAD 655

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            +    + +  ++ +  I ++    G +G+  AD +RL Q+   +++NA+ +S +G  + 
Sbjct: 656 TVAAAVEGLKDRLADAKIVLRTHVPGDIGTLYADERRLRQVLFNLIANAVRYSDEGGVID 715

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           +   R +G  +F+VK++G  IP++M   VF+RFV +    +RRG GLGLSIV+SF+ LHG
Sbjct: 716 VTCGRKDGAVVFTVKDHGCGIPQEMIDQVFSRFVGHDAGTKRRGAGLGLSIVKSFVELHG 775

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G V I S +   TT+ C  P+
Sbjct: 776 GQVEIQSREGVGTTVTCTFPA 796


>gi|240849710|ref|YP_002971098.1| sensor histidine kinase protein [Bartonella grahamii as4aup]
 gi|240266833|gb|ACS50421.1| sensor histidine kinase protein [Bartonella grahamii as4aup]
          Length = 821

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 291/772 (37%), Positives = 450/772 (58%), Gaps = 22/772 (2%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+ G I+   L T + +I+  R + +  K +    +  SE   +L  Y  LL E     
Sbjct: 58  LALCGGISCASLLTCLAVIM--RAKKTAQKPLKIIQANFSE---KLKYYEWLLEETEQFL 112

Query: 84  IVWDGKDETPEIIGQLH--QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141
           ++W+     P ++G L   Q+I I Q D     FE W++ +   +L     +LR +   F
Sbjct: 113 LIWENPTTLPRVVGALSALQKIGIDQKD--FQRFELWVEENSLRELDYVLTQLRCKCHPF 170

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
           DL   T N+  +++ G ++G+ A  R   +    SE A       +L   + + + L D 
Sbjct: 171 DLSITTTNNVLLQVTGVIAGTVAIARFQDISKQQSENARLQKDIARLLTELRMQRNLLDL 230

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
           +   VW +D  G + + N ++++ T+     F++   E   LF E  +++   +   E  
Sbjct: 231 IQEPVWIKDCEGKVCFINRAFREMTD-----FREDSDEVGDLFNENTQRK---TDETETI 282

Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTV 317
           F E V T+  G    + + R+  + G A  A D S    +  +L++      E L  ++ 
Sbjct: 283 FQEHVHTVIDGERHRFHLTRITTAEGMAAFARDDSAYENLAHELSYVLQSHCETLDQIST 342

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           A+AIFD N+ L+F N +F  LW ++ +FL + PS+   LE LR    + E  +W+ WKE 
Sbjct: 343 AVAIFDTNQKLKFCNHAFKILWPLETSFLESEPSHTLFLERLREKGLIAEHPDWRAWKEE 402

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +F  Y+ +E+++  W+LP+G+T+ VI   +P+GG  W++ENLT ++DLE +YNTL+K+QG
Sbjct: 403 LFKAYRQTESNQQIWNLPDGRTVRVISNPHPQGGVTWLYENLTEKIDLERRYNTLIKIQG 462

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           ET+D LSEGV VFG DGR++LSNPA   LW    N L  GTHI  + + CS        W
Sbjct: 463 ETLDKLSEGVVVFGTDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQSHCSAL-TLGQEW 521

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           D F   IT F ++R++  G ++L +D +++Y+++PLP+ QTMLTFVNVTD+V   RAL E
Sbjct: 522 DQFTKFITGFAEKRETYSGRIDLKNDMIIDYTLVPLPDGQTMLTFVNVTDTVHVARALQE 581

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +NEAL  AD ++N FVQHVSYELR+PLTNIIGF+D+L+    GS+N +Q +Y+ +I + S
Sbjct: 582 RNEALESADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSINKRQQEYLGHIHSES 641

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLN+VNDILDLAT+DAGIM+L+  ++ + D + +    I  +++  +I +       L
Sbjct: 642 GTLLNIVNDILDLATLDAGIMELDIKSVNIADAMIQAVARIEDRLNGRHITLLQQISPSL 701

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            S  AD +RL QIF  +LSNA++F+++ ST+       + + +FSV N GS IPED+   
Sbjct: 702 NSISADEKRLHQIFVNVLSNAINFATEASTIEFCVDEQDDNIVFSVHNEGSDIPEDVLDR 761

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF S++H G R G GLGLS+V+SF+ LHGGHV I +     TT+ C  P
Sbjct: 762 IFKRFSSHSHHGGRAGAGLGLSLVKSFVELHGGHVEILTGSGKGTTVKCFFP 813


>gi|49474858|ref|YP_032899.1| sensor histidine kinase protein [Bartonella henselae str.
           Houston-1]
 gi|49237663|emb|CAF26846.1| Sensor histidine kinase protein [Bartonella henselae str.
           Houston-1]
          Length = 821

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 289/776 (37%), Positives = 452/776 (58%), Gaps = 23/776 (2%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+ G I+   L T + +I+  R + +L K +    +F +++ ++L  Y  LL E     
Sbjct: 58  LALCGGISCASLFTCMAVIM--RAKKTLQKPLQ---TFQTDLSEKLKYYEWLLEETGQYL 112

Query: 84  IVWDGKDETPEIIGQLH--QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141
           ++W+     P ++G +   Q++ I Q D     FE WL+ +   +L  A ++LR +   F
Sbjct: 113 LIWENPTALPRVVGNIPTLQKVGIHQQD--FQRFEFWLEENSLRELDYALKQLRYKSHPF 170

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
           +L   T+N+  + + G ++G+ A  R   +    SE A       ++   + + + L D 
Sbjct: 171 ELSLFTKNNMLLHVTGVIAGTVAIARFQDISLQQSENARLQKNIARILTELRMQRNLLDV 230

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
           +   VW +D  G I + N ++++ T      F++   E   LF E  +++   +   E  
Sbjct: 231 IQEPVWIKDSEGKICFINRAFREITG-----FREGSNEVVDLFNETTQRK---TDETETV 282

Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTV 317
           F E V T+  G    + + R+  + G A  A D S    + ++L   +    E L  ++ 
Sbjct: 283 FQEHVHTVLDGERHRFHLTRITTAEGMAAFARDDSAYENLANELRRVFQNHCETLDQIST 342

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           A+A+FD N+ L+F N +F  LW ++ +FL + PS+   LE LR    + E  +W+TWKE 
Sbjct: 343 AVAVFDSNQKLKFCNHAFKILWPLENSFLESEPSHTLFLERLREKGLIGEHPDWRTWKEE 402

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +   Y+ +E+++  W+LP+G+T+ VI + +P+GG  W++ENLT ++DLE +YNTL+K+QG
Sbjct: 403 LLKAYRQTESNQQIWNLPDGRTVRVISSPHPQGGVTWLYENLTEKIDLEQRYNTLIKIQG 462

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           ET+D LSEGV VFG DG ++LSNPA   LW    N L  GTHI  + + CS      + W
Sbjct: 463 ETLDKLSEGVVVFGTDGCLRLSNPALSKLWSLPYNLLVEGTHITQLQSYCSPLTLRQE-W 521

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           D F   IT F +ER +  G ++L +  +++Y+++PLPN +TMLTFVNVTD+V   RAL E
Sbjct: 522 DWFTKFITGFAEERDTYSGRMDLKNGMIIDYTLVPLPNGETMLTFVNVTDTVHVARALQE 581

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           KNEAL  AD ++N FVQHVSYELR+PLTNIIGF+D+L+    G +N +Q +Y+ +I + S
Sbjct: 582 KNEALESADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGPINERQQEYLGHIHSES 641

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLN+VNDILDLAT+DAGIM+L+   + + D + +    +  +++  +I +       L
Sbjct: 642 GSLLNIVNDILDLATLDAGIMELDIKPVNIADAMVQAVARVEERLNGRHITLLQQISPSL 701

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D  RL QIF  +LSNA++F+++ ST+   A   + D +FSV N GS IPED+   
Sbjct: 702 NFISVDATRLHQIFVNVLSNAINFATEASTIEFCAEEKDDDIVFSVHNEGSDIPEDILDR 761

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792
           +F RF S++H G R G GLGLS+V+SF+ LHGG V I +     TT+ C  P SKE
Sbjct: 762 IFKRFSSHSHHGGRAGAGLGLSLVKSFVELHGGRVEIFTGTGQGTTVKCFFPISKE 817


>gi|220921597|ref|YP_002496898.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219946203|gb|ACL56595.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 830

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/768 (36%), Positives = 432/768 (56%), Gaps = 17/768 (2%)

Query: 32  GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91
           G+++ + I  +L IR+R   A++ ++  + L+++     +   LL     + I W G+DE
Sbjct: 58  GLIVFSTILSLLHIRERGRWARREHDLVAELADLRGAHDRAALLLGSERQIIITWCGRDE 117

Query: 92  TPEIIGQLHQRIDIPQTDTD--LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
            P+I G     +D  ++ +   +L+F  WL       L  A + LR  G+ F L   T  
Sbjct: 118 -PQIEGDASLAMDGTRSASPRRVLAFGTWLSAADAAALDAAVDTLRSRGERFRLTVRTLG 176

Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
              I+ +G+     A LR+  L G   EL E     ++    +SV   L D++   VW R
Sbjct: 177 GRTIEAQGQAVSGRALLRLRELTGERQELVELRAMLQEARGSLSVLAALLDAIPQPVWRR 236

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLF----KEEIKKRMISSSALEKNFCET 265
            + G +LWAN +Y    E      ++A+ E  +L     +EE  +R  S     +     
Sbjct: 237 GRDGRLLWANAAYVAAVEAGD--RERALAEGTELLDRVAREEAGRRRSSG----QGGALR 290

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI 321
           VS +  G  ++  +  V    G  GIA+DVS+  +V   L    E     L  L  A+AI
Sbjct: 291 VSAVMAGARRTLDVTEVAVESGSVGIAVDVSELESVRADLQRQMEANARTLDQLPTAVAI 350

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           FD  + L FHN ++ +LW++D  FL  NP + E+L+ LR+A KLPEQ ++++WK  + S 
Sbjct: 351 FDARQRLIFHNAAYRQLWDLDPGFLDGNPLDGEILDALRNARKLPEQADFRSWKTGVLSA 410

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y+++E  ++ WHLP+G+TL V+   NP+GG  ++F++++ +V LE++YN L++VQ ET+D
Sbjct: 411 YRAAEAQENWWHLPDGRTLRVVADPNPQGGLTYLFDDVSERVHLESRYNALMRVQSETLD 470

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            L E VAVFG DGR+KL+N AF ++W+     L    HI  + A C       + W    
Sbjct: 471 TLREPVAVFGSDGRLKLANRAFTAIWRIGPELLGTQPHIDEVIALCRPLSPAEEPWTEIR 530

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             +T   D R +L   L L   +VL+ +  PLP+  T+LT ++VT SV  ERALTEKNEA
Sbjct: 531 GAVTGLMDARHALACRLALKDGTVLDCAAQPLPDGATLLTHIDVTASVNVERALTEKNEA 590

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +   +++ FV HVSYELRSPLTNIIGFT+LL    +G+LN++Q +Y ++I  SS  LL
Sbjct: 591 LERTARLRDEFVHHVSYELRSPLTNIIGFTELLGDETVGALNTRQREYADHIMRSSAALL 650

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILDLA++DAG M+L    + +   +    + +  ++ E  I +       +G FV
Sbjct: 651 VIINDILDLASIDAGSMELTREVVDVQATIAAAVRGVEDRLAEAAITLDRDVPADIGGFV 710

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +R+ QI   +LSNA+ FS+ G TV+++A + + +  F+V + G  +P ++   VF+R
Sbjct: 711 ADGKRIRQILFNLLSNAIGFSAPGQTVVVQARKTDREIAFAVIDQGRGMPPEVVARVFDR 770

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F S+    + RGVGLGLSIV SF+ LHGG + I+S+    T + C  P
Sbjct: 771 FESHTLGTRHRGVGLGLSIVRSFVELHGGRIDIASAPGQGTKVTCTFP 818


>gi|254696348|ref|ZP_05158176.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 581

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/562 (44%), Positives = 376/562 (66%), Gaps = 7/562 (1%)

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 13  QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 72

Query: 295 VSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+ T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 73  LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 132

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 133 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 192

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 193 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 252

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              +  GTHI  IA  C++     DG W+ F + +T F D+R    G +EL   ++L ++
Sbjct: 253 SEMVREGTHISIIAKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFA 310

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           ++PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIG
Sbjct: 311 VVPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIG 370

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           FT+LL+T   GSLN +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L    + + +
Sbjct: 371 FTELLQTPAFGSLNERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVE 430

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++
Sbjct: 431 AISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIV 490

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           L+ ARD  D +F+V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHG
Sbjct: 491 LQVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHG 550

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G V I + +E  TT+ CR PS+
Sbjct: 551 GRVEIDTGEERGTTVICRFPSE 572


>gi|260760720|ref|ZP_05873063.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671152|gb|EEX57973.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 574

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/562 (44%), Positives = 376/562 (66%), Gaps = 7/562 (1%)

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 6   QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 65

Query: 295 VSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+ T     E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 66  LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 125

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 126 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 185

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 186 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 245

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              +  GTHI  IA  C++     DG W+ F + +T F D+R    G +EL   ++L ++
Sbjct: 246 SEMVREGTHISIIAKLCNQ--RGGDGLWEDFVSTVTGFLDQRDGRMGQVELSDGAILSFA 303

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           ++PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIG
Sbjct: 304 VVPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIG 363

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           FT+LL+T   GSLN +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L    + + +
Sbjct: 364 FTELLQTPAFGSLNERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVE 423

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++
Sbjct: 424 AISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIV 483

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           L+ ARD  D +F+V ++G  +P ++  +VF RF S  + G+RRG GLGL+IV+SF+ LHG
Sbjct: 484 LQVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLAIVKSFVELHG 543

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G V I + +E  TT+ CR PS+
Sbjct: 544 GRVEIDTGEERGTTVICRFPSE 565


>gi|319898223|ref|YP_004158316.1| sensor histidine kinase [Bartonella clarridgeiae 73]
 gi|319402187|emb|CBI75718.1| Putative sensor histidine kinase [Bartonella clarridgeiae 73]
          Length = 825

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 301/778 (38%), Positives = 442/778 (56%), Gaps = 29/778 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           I +FG+I+   L   I II++I  + +L K      + LSE   +L  Y  LL E     
Sbjct: 64  IVLFGSISCSSL--FICIIVIINTKRALWKSWKMIQANLSE---KLKNYEWLLEETGQCL 118

Query: 84  IVWDGKDETPEIIGQLH--QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141
            +WD     P I+G +   Q+  I Q D     FE WL+ +   +  +A  +LR  G SF
Sbjct: 119 FIWDNPTALPRIVGNIPALQKAGIHQKD--FQCFEKWLEKNSLQQFDQALTQLRCNGCSF 176

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
           +L   T +   ++I G ++G+ A +R   +    SE         ++   + + + L D 
Sbjct: 177 ELSVTTTSKIMLQITGIIAGTAAIVRFQDISAQQSENIRLQKDAIQILTELKMQRNLLDH 236

Query: 202 LDFLVWHRDQAGDILWANISYKKNT---ETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
           +   VW RD  G I + N ++++ T   E   IV          LF E     + ++   
Sbjct: 237 IREPVWIRDCEGKICFTNRAFREMTNFQENNNIV---------DLFNE---TTLCTTDET 284

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQ---LTHTYEILHN 314
           E  F + V T+  G    + + R+    G A  A D S  E  V +    L    E L  
Sbjct: 285 EAIFQKHVYTVVKGERHHFHLTRITTKEGMAAFARDDSAYENLVKEMGRILQSHCETLDQ 344

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           ++ A+AIFD N+ L+F N +F  LW ++++FL + PS+   LE LR    + E  +W+ W
Sbjct: 345 ISTAVAIFDANQKLKFCNHAFKILWPLEISFLESEPSHSLFLEHLREKGFIGEHPDWRVW 404

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           KE +  VY+ +E+++  W+LP+G+T+ VI + +P+GG  W++ENLT ++DLE +YNTL+K
Sbjct: 405 KEELLKVYRLTESNQQIWNLPDGRTVRVISSPHPQGGVTWLYENLTEKIDLERRYNTLIK 464

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +QGET+D LSEGV VFG DGR++LSNPA   LW    N L  GTHI  +   CS      
Sbjct: 465 IQGETLDKLSEGVVVFGTDGRLRLSNPALSKLWSLPHNLLVEGTHITQLQNHCSAL-TTG 523

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           + W  F   IT F ++R +  G ++L S  +++Y++ PLPN QTMLTFVNVTD+V   RA
Sbjct: 524 EEWKQFTQFITGFAEKRDAYSGRIDLKSGIIIDYTLAPLPNGQTMLTFVNVTDTVHIARA 583

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EKNEAL KAD ++N FVQHVSYELR+PLTNIIGF+D+L+    GS+N +Q +Y+ YI 
Sbjct: 584 LQEKNEALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSINERQQEYLGYIH 643

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + S +LLN+VNDILDLAT+DAGIM L+   + + + + +    +  ++H   I +     
Sbjct: 644 SESGVLLNIVNDILDLATLDAGIMILDIKPVHIAEAMTQAVARVEERLHGRQITLSQHIS 703

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD +RL QIF  +LSNA++F+++ ST+  +A       IFSV N GS IP D+
Sbjct: 704 PSLKFISADVKRLHQIFVNVLSNAINFATEKSTIEFRADTQGDHIIFSVHNEGSDIPTDI 763

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F RF S++H G R G GLGLS+V+SF+ LH G V I +     TT+ C  P+KE
Sbjct: 764 LDRIFKRFSSHSHHGGRAGAGLGLSLVKSFVELHDGRVEIFTGMGQGTTVKCFFPNKE 821


>gi|170738842|ref|YP_001767497.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168193116|gb|ACA15063.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 830

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/725 (37%), Positives = 412/725 (56%), Gaps = 17/725 (2%)

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTD--LLSFENWLKFHHYIKLSKATE 132
           LL     + +VW G+DE P I G     +D  +T +   +L+F  WL       L  A +
Sbjct: 101 LLGSERQIVVVWSGRDE-PLIEGDASLAMDGTRTASPRRVLAFGTWLTAADAAALDAAVD 159

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
            LR  G+ F L A T     ++ +G+  G  A LR+  + G   EL E     ++    +
Sbjct: 160 TLRSRGERFRLTARTLGGRTVEAQGQAVGGRALLRLREITGERQELVELRATLQEARGSL 219

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF----KEEI 248
           SV   L D++   VW R + G +LWAN +Y    E      ++ + E  +L     ++E 
Sbjct: 220 SVLAALLDAIPQPVWRRGRDGRLLWANAAYVAAVEATD--RERVVAEGVELLDRAARDEA 277

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
           ++R  S  A        VS +  G  ++  +  V    G  GIA+DVS+  +V   L   
Sbjct: 278 ERRRTSREA----GALRVSAVVAGARRTLDVTEVALETGSVGIAVDVSELESVRADLQRQ 333

Query: 309 YE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
            E     L  L  A+AIFD  + L FHN ++ +LW++  AFL  +P + E+L+ LR+A K
Sbjct: 334 MEANVRTLDQLPTAVAIFDARQRLIFHNAAYRQLWDLGPAFLDGSPLDGEILDALRNARK 393

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
           LPEQ ++++WK  + S Y+++E  ++ WHLP+G+TL V+   NP+GG  ++F++++ +V 
Sbjct: 394 LPEQADFRSWKTGVLSAYRAAEAQENWWHLPDGRTLRVVADPNPQGGLTYLFDDVSERVH 453

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           LE++YN L++VQ ET+D L E VAVFG DGR+KL+N AF ++W+     L+   H+  I 
Sbjct: 454 LESRYNALMRVQSETLDTLKEPVAVFGSDGRLKLANRAFMAIWRIGPETLAAQPHVDEII 513

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
             C       + W      +T   D R ++   LEL   +VL+ +  PLP+  T+LT ++
Sbjct: 514 GLCRSLSAAEEPWTEIRGAVTGLMDARHAVASRLELKDGTVLDCAAQPLPDGATLLTHID 573

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VT SV  ERALTEKNEAL +   +++ FV HVSYELRSPLTNIIGFT+LL    +G+LN+
Sbjct: 574 VTASVNVERALTEKNEALERTARLRDEFVHHVSYELRSPLTNIIGFTELLGDETVGALNT 633

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +Y ++I  SS  LL ++NDILDLA++DAG M+L    + +   +    + I  ++ E
Sbjct: 634 RQREYADHIMRSSAALLVIINDILDLASIDAGSMELTREVVDVQATIAAAVRGIEDRLAE 693

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             I + +     +G FVAD +R+ QI   +LSNA+ FS+ G TV+++A +   +  FSV 
Sbjct: 694 AAITLDLDVPADIGGFVADGKRIRQILFNLLSNAIGFSAPGQTVVVQARKTGAEIAFSVI 753

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  +P ++   VF+RF S+    + RGVGLGLSIV SF+ LHGG + I+S+    T +
Sbjct: 754 DQGRGMPPEVVARVFDRFESHTLGTRHRGVGLGLSIVRSFVELHGGRIDIASAPGQGTRV 813

Query: 785 NCRIP 789
            C  P
Sbjct: 814 TCTFP 818


>gi|49473713|ref|YP_031755.1| sensor histidine kinase protein [Bartonella quintana str. Toulouse]
 gi|49239216|emb|CAF25535.1| Sensor histidine kinase protein [Bartonella quintana str. Toulouse]
          Length = 814

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/746 (37%), Positives = 438/746 (58%), Gaps = 19/746 (2%)

Query: 52  AKKVNETY--SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLH--QRIDIPQ 107
           AKK ++ +  +  ++  ++L  Y  LL E     ++W+     P +IG +   Q+  IPQ
Sbjct: 77  AKKASQKFLKTIQADFSEKLKYYEWLLEETGQYLLIWETPTALPHVIGNIPALQKAGIPQ 136

Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR 167
            +     FE WL+    ++L  A  +LR +   F+L   T+N+  +++ G ++G+ A  R
Sbjct: 137 QN--FQCFELWLEETSLLELDHALTQLRCKSHPFELSITTKNNMLLQVTGVIAGTVAIAR 194

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
                   SE A       ++   + + + L D +   VW +D  G + + N ++++ T 
Sbjct: 195 FQDTSTQQSENARLQKDITRILTELRMQRNLLDLIQEPVWIQDCEGKVCFINRAFREMTG 254

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                F++   +   LF E  +++   +   E  F E V T+  G    + + R+  + G
Sbjct: 255 -----FREDSNKVVDLFNETTQRQ---TDETETIFQEHVHTVIGGERYRFHLTRITTTEG 306

Query: 288 EAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
            A  A D S    ++++L        E L  ++ A+AIFD N+ L+F N +F  LW ++ 
Sbjct: 307 MAAFARDDSAYENLSNELRRVLQSHCETLDQISTAVAIFDTNQKLKFCNHAFKILWPLEN 366

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           +FL + PS+  LLE LR    + E  +W+TWKE +F  Y+ +E+++  W+LP+G+T+ VI
Sbjct: 367 SFLESEPSHTLLLERLREKGLIGENPDWRTWKEELFKAYRQTESNQQIWNLPDGRTVRVI 426

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
            + +P+GG  W++ENLT ++DLE +YNTL+K+QGET+D LSEGV VF  DGR++LSNPA 
Sbjct: 427 SSPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFATDGRLRLSNPAL 486

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             LW    N L  GTHI  + + CS        WD F   IT F ++R +  G ++L + 
Sbjct: 487 SKLWSLPYNLLVEGTHITQLQSYCSPL-TVGKEWDRFTKFITGFAEKRDTYSGRMDLKNG 545

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            V++Y+++PLPN +TMLTFVNVTD++   RAL EKNE L  AD ++N FVQHVSYELR+P
Sbjct: 546 MVIDYTLVPLPNGETMLTFVNVTDTIYVARALQEKNETLESADRLRNEFVQHVSYELRTP 605

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LTNIIGF+D+L+    GS+N +Q +Y+ +I + S+ LLN+VNDILDLAT+DAGIM+LN  
Sbjct: 606 LTNIIGFSDILRDQIFGSINERQKEYLGHIHSESSTLLNIVNDILDLATLDAGIMELNIK 665

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           ++ + D + +    +  +++  +I +       L    AD  RL QIF  ILSNA++F++
Sbjct: 666 SVNIADAMVQAVARVEERLNGRHITLLQQISPSLNFISADATRLHQIFVNILSNAINFAT 725

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           + ST+   A   + + +FSV N GS IP+D+   +F RF S++H G R G GLGLS+V+S
Sbjct: 726 EASTIEFCAEEQDNNIVFSVHNEGSDIPKDILDRIFKRFSSHSHHGGRAGAGLGLSLVKS 785

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
           F+ LH GHV I +     TT+ C  P
Sbjct: 786 FVELHNGHVEILTGAGQGTTVQCFFP 811


>gi|163867336|ref|YP_001608530.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476]
 gi|161016977|emb|CAK00535.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476]
          Length = 821

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/755 (37%), Positives = 441/755 (58%), Gaps = 20/755 (2%)

Query: 41  IILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLH 100
           +++++  + ++ K +   ++ LSE   +L  Y  LL E   L ++W+     P ++G L 
Sbjct: 73  VVVIMHAKKAVQKPLKTVHADLSE---KLKYYEWLLEETEQLLLIWENPTTLPRVVGTLS 129

Query: 101 --QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGR 158
             Q+I I Q +     FE W++ +   +L  A  +LR +   F+L   T N   +++ G 
Sbjct: 130 TLQKIGIDQQN--FQRFELWVEENSLRELDYALTQLRCKCHPFELSITTTNHVLLQVTGV 187

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           ++G+ A  R   +    SE A        L   + + + L D +   VW +D  G + + 
Sbjct: 188 IAGTVAIARFQDISKQQSENARLQKDIAHLLTELRMQRNLLDLIQEPVWIKDCKGKVCFI 247

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N +++     E I +++   E   LF E  + +   +   E  F E V T+  G  + + 
Sbjct: 248 NRAFR-----EMIDYREGSDEVGDLFNENTQCK---TDETETIFQEHVHTVIDGERRRFH 299

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRS 334
           + R+  + G A  A D S    +  +L +      E L  ++ A+AIFD N+ L+F N +
Sbjct: 300 LTRITTAEGMAAFARDDSAYENLAHELRYILQSHCETLDQISTAVAIFDTNQKLKFCNHA 359

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
           F  LW ++ +FL + PS+   LE LR    + E  +W+ WKE +F  Y+  E+++  W+L
Sbjct: 360 FKILWPLESSFLESEPSHTLFLERLREKGLIAEHPDWRAWKEELFKAYRQMESNQQIWNL 419

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           P+G+T+ V+   +P+GG  W++ENLT ++DLE +YNTL+K+QGET+D LSEGV VFG DG
Sbjct: 420 PDGRTVRVVSNPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFGMDG 479

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           R++LSNPA   LW    N L  GTHI  + + CS        WD F   IT F ++R++ 
Sbjct: 480 RLRLSNPALSKLWSLPYNLLVEGTHITQLQSHCSAL-TLGQEWDKFTKFITGFAEKRETY 538

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G ++L +D +++Y+++PLP+ QTMLTFVNVTD+V   RAL E+NEAL  AD ++N FVQ
Sbjct: 539 SGRIDLKNDMIIDYTLVPLPDGQTMLTFVNVTDTVHVARALQERNEALESADRLRNEFVQ 598

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           HVSYELR+PLTNIIGF+D+L+    GS+N +Q +Y+ +I + S  LLN+VNDILDLAT+D
Sbjct: 599 HVSYELRTPLTNIIGFSDILRDQIFGSINERQQEYLGHIHSESGTLLNIVNDILDLATLD 658

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AGIM+L+   + + D + +    +  +++  +I +       L S  AD +RL QIF  +
Sbjct: 659 AGIMELDIKPVNIADAMIQAVARVEDRLNGRHITLLQQISPSLNSISADEKRLHQIFVNV 718

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           LSNA++F+++ ST+       + + +FSV N GS IPED+   +F RF S++H G R G 
Sbjct: 719 LSNALNFATEASTIEFCVDEQDDNIVFSVHNEGSDIPEDILDRIFKRFSSHSHHGGRAGA 778

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLS+V+SF+ LHGG+V I +     TT+ C  P
Sbjct: 779 GLGLSLVKSFVELHGGYVEILTGSGKGTTVKCFFP 813


>gi|319407902|emb|CBI81556.1| sensor histidine kinase protein [Bartonella schoenbuchensis R1]
          Length = 817

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 289/775 (37%), Positives = 439/775 (56%), Gaps = 22/775 (2%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+FG I+   L   I +I+ I++ +    K+ +   F     ++L  Y  L  E     
Sbjct: 54  LALFGGISCASLLICIAVIVAIKKASWKPLKMIQADFF-----EKLKYYEWLFEETGQCL 108

Query: 84  IVWDGKDETPEIIGQLH--QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141
           ++W+     P I+G +   Q+++I Q +     F  WL+     +L +A  +LR  G  F
Sbjct: 109 LIWENPTALPHIVGNISALQKMEINQKN--FQCFGRWLEESSLRQLDQALIELRCNGCPF 166

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
           +L   T N   +++ G ++G+ A  R  ++    SE         +L   +++ + L D 
Sbjct: 167 ELSITTTNKILLQVTGVIAGTAAIARFQNISTQQSENIRLQKNIAELLKELNLQRNLLDH 226

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
           +   VW +D  G I + N ++++ T      F++       LF E  + +   +   E  
Sbjct: 227 IQEPVWIQDCKGKICFINRAFREITG-----FKEGSNHITDLFNEATQCK---TGEAETV 278

Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ----LTHTYEILHNLTV 317
           F E V T+  G  + + + RV    G A  A D S    +  +    L +  E L  ++ 
Sbjct: 279 FQEHVHTVVDGERRHFHLTRVTTREGMAAFARDDSAHENLTKEMRRILQNHCETLDQIST 338

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           A+AIFD ++ L+F N +F  LW ++ +FL + PS+  LLE LR    L E  +W+ WKE 
Sbjct: 339 AVAIFDAHQKLKFCNHAFKVLWPLENSFLESEPSHSLLLEQLREKGLLGEHPDWRAWKEE 398

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +F  Y+  E+ +  W+LP+G+T+ VI + +P+GG  W +ENLT ++DLE +YNTL+K+QG
Sbjct: 399 LFKAYQQIESDQQIWNLPDGRTVRVIASPHPQGGVTWFYENLTEKIDLERRYNTLIKIQG 458

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           ET+D LSEGV VFG DGR++LSNPA   LW    N L  GTHI  +   CS        W
Sbjct: 459 ETLDKLSEGVVVFGTDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQTHCSTL-TVGQEW 517

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           + F   IT F D+R +  G ++L + ++++Y+++PLPN QTMLTFVNVTDSV   RAL E
Sbjct: 518 EQFTKFITGFADKRDAYSGRIDLKNGTIIDYTLVPLPNGQTMLTFVNVTDSVHIARALQE 577

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +NEAL  AD ++N FVQHVSYELR+PLTNI+GF+D+L+    GS+N +Q +Y+ +I + S
Sbjct: 578 RNEALESADRLRNEFVQHVSYELRTPLTNIVGFSDILRDQIFGSINERQHEYLGHIQSES 637

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLN+VNDILDLAT+DAGIM+L+   + + D + +    +   ++   I         L
Sbjct: 638 NALLNIVNDILDLATLDAGIMELDIKPVNIADAMAQAVARVEEHLNGRYITFSQQISPSL 697

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              +AD  RL QIF  ILSNA++F+++ ST+   A +   + +FSV N GS IP D+   
Sbjct: 698 NFILADATRLHQIFVNILSNAVNFATEESTIEFCANKQGDNIVFSVHNEGSDIPTDILDR 757

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F RF S  H G R G GLGLS+V+SF+ LHGGHV I +     TT+ C  P ++
Sbjct: 758 IFKRFSSRPHHGGRAGAGLGLSLVKSFVELHGGHVKILTGTGQGTTVKCFFPVQK 812


>gi|209883640|ref|YP_002287497.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha
           carboxidovorans OM5]
 gi|209871836|gb|ACI91632.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha
           carboxidovorans OM5]
          Length = 816

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/764 (35%), Positives = 422/764 (55%), Gaps = 13/764 (1%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           +++  I L+R R S A    + ++    +  +  +  +LL     + I W   DE P+I 
Sbjct: 50  SVVATIALLRTRLSAAATEAKLHADNQALQSETDRLRALLFAEPQVLIAWSAGDERPDIT 109

Query: 97  GQLHQRIDIPQTDT----DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152
           G     + +PQ  T     +L+F  WL     + +  A + LR+ G+SF L   T N  A
Sbjct: 110 GDTA--LLMPQGQTAPAQRILAFGTWLHPEQALAMDHAVDGLRERGESFLLTMATSNGRA 167

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
           I+  GR  G  A +RI  L G+  ELAETT + + L       +    ++   +W     
Sbjct: 168 IEAMGRAVGGQAIVRIRELSGVRLELAETTQRHRDLLEETDALRAFAAAIPLPLWALRTD 227

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
           G + +AN +Y +  E E      AI  S +L   E +  M  + A  K +   +     G
Sbjct: 228 GTLRYANAAYAQAAEAENPA--DAIARSVELLDSEDRTAMRDALADGKAYRARLPVAIGG 285

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYL 328
             +++ +       G  G+A+D S+ +   D LTH       +L  L+  +A+FD +R L
Sbjct: 286 ERRTFDVFAFNIGDGSVGMAVDASETVAFKDALTHMASAHRRMLDQLSSGVAVFDADRRL 345

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            F+N S+  LW++D AFL ++P +  +LE LR+  K+PEQ +++ WK  +   Y++ E  
Sbjct: 346 AFYNDSYRRLWDLDSAFLDSSPDDSSVLEKLRAMRKIPEQPDFRAWKAKLHEAYRAVEPA 405

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           KDTW+LP+G+ + ++ T NP GG  ++F+++T  + L+ +++ L++VQ ET+D+L+E VA
Sbjct: 406 KDTWYLPDGRAISIVTTPNPEGGVTYLFDDVTEGLKLQRQHDGLLRVQRETLDNLAEAVA 465

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           VFG +GR +L NP F  +WK     L    HI  I   C   + E+  W    A IT  D
Sbjct: 466 VFGGNGRARLFNPPFARMWKLSPEALEQQPHIETIEQWCRPLFEEAATWQAMRAAITGID 525

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           + R+ LQ  LE    SVL+ + +PLP+  TMLTF +VTD+V  ERAL E+N+AL  AD++
Sbjct: 526 N-REPLQLRLERKDGSVLDCTTMPLPDGATMLTFQDVTDTVNVERALRERNDALEAADQM 584

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  FV HVSYELRSPLT IIGF   L     G +  KQS+Y+ YI+ S+  LL ++N+IL
Sbjct: 585 KVDFVHHVSYELRSPLTTIIGFAHFLSDPATGPMTVKQSEYLGYITTSTNALLAIINNIL 644

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLAT++AG M L+   + L   + E    +  ++  +NIR+ V  D  +  FVAD +R++
Sbjct: 645 DLATINAGAMTLDLGPVDLRKTVEEATAGLQDRLVHDNIRLAVEIDPSVTGFVADERRMV 704

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           QIF  +L+NA+ FS    T+   A R+NG    +V + G  IP +M   +F+ F S A+ 
Sbjct: 705 QIFYNLLANAIGFSPPNGTIRFSAWRENGAVCCAVSDAGPGIPPEMRDRMFDWFESRANG 764

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + RG GLGLS+V SF+ LHGG V + S+ +  TT+ C  P+ +
Sbjct: 765 SRHRGAGLGLSLVRSFVELHGGTVRVDSAVDQGTTVTCEFPADQ 808


>gi|146337252|ref|YP_001202300.1| putative sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146190058|emb|CAL74050.1| Putative sensor histidine kinase [Bradyrhizobium sp. ORS278]
          Length = 835

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/792 (34%), Positives = 427/792 (53%), Gaps = 18/792 (2%)

Query: 11  GKGIE---ICTLFSCKIAVFGTIAGMLLT---TIIPIILLIRQRNSLAKKVNETYSFLSE 64
           G G+    I +LF    +    +  ML     +++  I L+R R + A+K     + ++E
Sbjct: 40  GDGVPADAISSLFELSRSDVAEVTAMLALLGFSVVAAIALVRTRLAAARKEARLRADVAE 99

Query: 65  ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI--DIPQTDTDLLSFENWLKFH 122
           +  Q  +Y +LL     + I W      P+I G     +  D PQ    +L+F +WL   
Sbjct: 100 LQLQADRYRALLFAEPQILIAWPAGGHRPQISGDTSMLVPSDQPQR---ILAFGSWLPPE 156

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
             ++L  A E LR+ G+ F L   T +  AI+  GR  G  A +RI  L G+  ELAET 
Sbjct: 157 PALQLDHAVEALREAGEGFMLHLTTSHGHAIEAMGRAIGGQAIVRIRELSGLRRELAETQ 216

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L+ K L       + L  +L + +W R   G + + N +Y +  +   I    AI  + +
Sbjct: 217 LRFKALGEETESLRALASALPWPIWARHANGALAYVNAAYARAADARDI--PDAISRNLE 274

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L     +  +  +     +F   +  +  G  + + +       G AG+AID S+   + 
Sbjct: 275 LLDSADRSDLQRALGAGGHFEGRLPIVMGGERRMHDVRAFTLGGGSAGVAIDASEAAALT 334

Query: 303 DQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           D L   +E     L  L+  +A+FD  R L F+N S+  LW++D AFL + P +  +L+ 
Sbjct: 335 DALVRMHEAHRRTLDQLSSGVAVFDGQRRLAFYNDSYRRLWDLDTAFLDSQPDDSSVLDR 394

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           LR++ KLPEQ +++ WK  +   Y++ E  KDTW LP+G+ L V+ T NP GG  ++F++
Sbjct: 395 LRASRKLPEQADFRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNPEGGVTYLFDD 454

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T    L  +Y+ L++VQ ET+D L+EGVAVFG +GR++L NPAF  +W+   + L    
Sbjct: 455 VTESFALARRYDGLIRVQRETLDSLAEGVAVFGSNGRVELFNPAFAKMWRLSPDSLREHP 514

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           HI  + + C   Y++S  W      ITS ++ R  +   LE    SVL+    PLP+  T
Sbjct: 515 HIDTVESWCRSIYDDSVAWRTIREAITSIEN-RLDVALKLERKDGSVLDCMSRPLPDGAT 573

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           MLTF ++TD+   ERAL E NEAL  A ++K  FV HVSYELR+PLT IIGF   L    
Sbjct: 574 MLTFQDITDTENVERALRESNEALEAAGQMKIDFVHHVSYELRAPLTTIIGFAHFLSDPS 633

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L  KQ++Y++Y++ S+  LL L N+ILDLAT+DAG MKL    +     +    + +
Sbjct: 634 TGPLTPKQAEYLDYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDAAKAIEAAAEGV 693

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++  + IR++V     +GSFV D +R++Q+   +L+NA+ FS + STVI+ A R +  
Sbjct: 694 QDRLATDRIRLRVEVAPDVGSFVGDERRVVQVLYNLLANAVGFSPQDSTVIVSARRTDHS 753

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F+V + G  IP D+   +F+ FVS +   + RG GLGLS+V SF+ LHGG V + S  
Sbjct: 754 VAFAVTDCGPGIPADIKDQMFDWFVSRSQGSRHRGAGLGLSLVRSFVELHGGKVRMDSVV 813

Query: 779 EGVTTINCRIPS 790
              TT+ C  P+
Sbjct: 814 GKGTTVTCDFPT 825


>gi|148251707|ref|YP_001236292.1| putative sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146403880|gb|ABQ32386.1| Putative sensor histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 835

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/792 (34%), Positives = 429/792 (54%), Gaps = 18/792 (2%)

Query: 11  GKGIE---ICTLFSCK---IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSE 64
           G G+    + TLF      +A    +  +L  +++  + L+R R + A+K     + ++ 
Sbjct: 40  GNGVPADAVTTLFELSRQDVAEVTAMLALLGFSVVAAVALVRTRLAAARKEARLRADVAA 99

Query: 65  ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI--DIPQTDTDLLSFENWLKFH 122
           +  Q  +Y +LL     + I W      P+I G     +  D PQ    +L+F +WL   
Sbjct: 100 LQLQADRYRALLFAEPQILIAWPAGGHRPQISGDTAMLVPQDQPQR---ILAFGSWLPPE 156

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
             ++L +A + LR+ G+ F L   + +  AI+  GR  G  A +RI  L G+  ELAET 
Sbjct: 157 PALQLDRAVDALREAGEGFLLHLTSSHGHAIEAMGRAIGGQAIVRIRELSGLRRELAETQ 216

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L+ K L       + L  +L + VW R   G + + N +Y +  +   +    AI  + +
Sbjct: 217 LRFKALGEETESLRALAAALPWPVWARQANGALTYVNPAYARAADARDV--PDAISRNLE 274

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L     +  +  +      F   +  +  G  + + +     S G AG+AID S+   + 
Sbjct: 275 LLDSADRTDLQRALGAAGRFEGRLPIVTGGERRMHDVHAFTLSNGSAGVAIDASEAAALR 334

Query: 303 DQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             L    E     L  L+  +A+FD  R L F+N S+  LW++D AFL + P +  +L+ 
Sbjct: 335 TALVRMAEAHRRTLDQLSSGVAVFDGQRRLSFYNDSYRRLWDLDSAFLDSQPDDSSVLDR 394

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           LR+A KLPEQ +++ WK  +   Y++ E  KDTW LP+G+ L V+ T NP GG  ++F++
Sbjct: 395 LRAARKLPEQADFRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNPEGGVTYLFDD 454

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T    L  +++ L++VQ ET+D L+EGVAVFG +GR++L NPAF  +W+   ++L    
Sbjct: 455 VTESFALARRFDGLIRVQRETLDSLAEGVAVFGSNGRVELFNPAFAKMWRLSPDQLREHP 514

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           HI  + + C   Y+++  W      ITS ++ R  +   LE    SVL+    PLP+  T
Sbjct: 515 HIDTVESWCRSLYDDAVAWRTIREAITSIEN-RLDIALKLERKDGSVLDCMSRPLPDGAT 573

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           MLTF ++TD+   ERAL E NEAL  A ++K  FV HVSYELR+PLT IIGF   L    
Sbjct: 574 MLTFQDITDTENVERALRESNEALEAAGQMKIDFVHHVSYELRAPLTTIIGFAHFLSDPS 633

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L  KQ++Y++Y++ S+  LL L N+ILDLAT+DAG MKL    +     +    + +
Sbjct: 634 TGPLTPKQAEYLDYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDAAKAIEAAAEGV 693

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++  + IR+KV  D  +G+FV D +R++Q+   +L+NA+ FS + STV++ A R +  
Sbjct: 694 QDRLATDRIRLKVQVDPNVGTFVGDERRVVQVLYNLLANAVGFSPQDSTVLVSARRTDHS 753

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             FSV ++G  IP D+   +F+ FVS +   + RG GLGLS+V SF+ LHGG V + S  
Sbjct: 754 VAFSVTDSGPGIPPDLKDQMFDWFVSRSQGSRHRGAGLGLSLVRSFVELHGGKVRMDSVV 813

Query: 779 EGVTTINCRIPS 790
              TT+ C  P+
Sbjct: 814 GKGTTVTCDFPT 825


>gi|121602765|ref|YP_989601.1| sensor histidine kinase [Bartonella bacilliformis KC583]
 gi|120614942|gb|ABM45543.1| sensor histidine kinase [Bartonella bacilliformis KC583]
          Length = 824

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 284/782 (36%), Positives = 436/782 (55%), Gaps = 30/782 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+ G+I+   L T I +I+ I++    + +V +     +   ++L +Y  LL E     
Sbjct: 43  LALCGSISCASLLTCITVIINIKKNAEKSLQVIQ-----ANFSEKLKQYEWLLEETEQYL 97

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           ++W+     P I+G + +       + +   FE+WL+     +L +A  +LR  G SF+L
Sbjct: 98  LIWEHPTALPHIVGNISKLQKAGINEQNFQCFEDWLEESFLQQLDQALTQLRCHGCSFEL 157

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T N  A+++ G ++G+ A  R        SE         ++   + + + L D + 
Sbjct: 158 SITTINKIALQVTGVIAGTAAIARFQDFSKQQSENIRLREDMTRMLTELKIQRNLLDYIQ 217

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN-- 261
             VW R+  G I + N +++  T      FQ+        F E I+ ++   + + +   
Sbjct: 218 EPVWIRNSEGKICFVNNAFRDMTN-----FQEGCDTITDPFNETIQFQINKGNQINERSQ 272

Query: 262 -------------FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
                        F + V T+ +G  + + + R+    G A  A D S    + +++   
Sbjct: 273 TNGTNQLDETKTVFQKHVHTVVNGERRHFHLTRITTEEGMAAFARDDSAYKNLTNEMEQI 332

Query: 309 ----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
               +E L  ++ A+AIFD N+ L+F N +F  LW ++ +FL + PS+  LLE LR    
Sbjct: 333 LQSHHETLDQISTAVAIFDSNQKLKFCNHAFRILWPLESSFLESEPSHTLLLERLREKGF 392

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
           + E  +W+ WKE + + +   E++   W+LPNG T+ V+   +P+GG  W++ENLT ++D
Sbjct: 393 IGEHPDWRAWKEELLTSHHQIESNPKIWNLPNGCTVRVMSRPHPQGGITWLYENLTEKID 452

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           LE +YNTL+K+QGET+D LSEGV VFG DGR+ LSNPA   LW    N L  GTHI  + 
Sbjct: 453 LERRYNTLIKIQGETLDKLSEGVVVFGTDGRLCLSNPALSKLWSLPYNLLVEGTHITQLQ 512

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
             CS      + W  F  +IT F ++R +  G ++L +  +++Y+ +PLPN QTMLTFVN
Sbjct: 513 THCSAL-TVGEEWKQFTQLITGFAEKRDARSGRIDLRNGMIIDYTFVPLPNGQTMLTFVN 571

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VTD+V   RAL EKNEAL   D ++N FVQHVSYELR+PLTNIIGF+D+L+    GSLN 
Sbjct: 572 VTDTVHIARALQEKNEALESTDRLRNEFVQHVSYELRTPLTNIIGFSDILRDQMFGSLNE 631

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +Y+ +I + S  LLNLVNDILDLAT+DAGIM+LN  ++ + D + +    I   ++ 
Sbjct: 632 RQHEYLGHIQSESNTLLNLVNDILDLATLDAGIMELNIQSVNIVDAMAQAVTRIEEHLNG 691

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +I         L    AD  RL QIF  +LSNA++F+ + ST+   A + +   +FSV 
Sbjct: 692 RHILFSQHISPSLDVIFADATRLHQIFVNVLSNAVNFAPEASTIEFCAHKQDNHIVFSVH 751

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           N GS IP D+   +F RF S+AH G R G GLGLS+V+SF+ LHGG+V I +     TT+
Sbjct: 752 NEGSDIPSDILDRIFKRFSSHAHHGGRAGAGLGLSLVKSFVELHGGYVEILTGTGQGTTV 811

Query: 785 NC 786
            C
Sbjct: 812 KC 813


>gi|319406430|emb|CBI80070.1| sensor histidine kinase protein [Bartonella sp. 1-1C]
          Length = 820

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 289/773 (37%), Positives = 432/773 (55%), Gaps = 19/773 (2%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           I +FG+IA   L  +I +I++I  + +L K      +  S   D+L  Y  LL +     
Sbjct: 58  IVIFGSIACSSL--LICVIVIINTKRALRKAWIMIQAHFS---DKLKHYEWLLEKTGQCL 112

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
            +WD     P IIG +           D   FE WL+   + +L +A  +LR  G SF+ 
Sbjct: 113 FIWDNPTALPRIIGNIPTLQKAGIHKKDFQHFEKWLEKSSFQQLDQALTQLRCNGCSFEF 172

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T     +++ G +SG+ A +R   +    SE      +  ++   +++ + L D + 
Sbjct: 173 SVMTITKIFLQVTGIISGTAAIVRFQDISAQQSENIRLQKETTQILTELNMQRNLLDHIQ 232

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW RD  G I + N ++++ T      FQ    E   +     +    ++   E  F 
Sbjct: 233 EPVWIRDCEGKIYFTNRAFREMTN-----FQ----EKNNIVDPFNETTQCTTDETEAIFQ 283

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQ---LTHTYEILHNLTVAI 319
           + + T+  G    + + R+    G A  A D S  E  V +    L +  E L  ++ A+
Sbjct: 284 KHIYTVVKGERHHFHLTRITTKEGMASFARDDSAYENLVKEMKRILQNHCETLDQISTAV 343

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD N+ L+F N +F  LW ++++FL + PS+  LLE LR    + E  +W  WKE +F
Sbjct: 344 AIFDANQKLKFCNHAFKILWPLEISFLESEPSHSLLLERLREKGFIGEHPDWHAWKEELF 403

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+ +E+++  W+LP+G+T+ VI + +P+GG  W++ENLT ++DLE +YNTL+K+QGET
Sbjct: 404 KAYQQTESNQQIWNLPDGRTVRVISSPHPQGGITWLYENLTEKIDLERRYNTLIKIQGET 463

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VFG DGR++LSNPA   LW    N    G HI  +   CS      + W  
Sbjct: 464 LDKLSEGVVVFGTDGRLRLSNPALSKLWSLPHNLPIEGAHITELQNHCSAL-TIGEEWKK 522

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           FA  IT   ++R +  G ++L S  +++Y++ PLPN QTMLTFVNVTD+V   RAL EKN
Sbjct: 523 FAQFITGCAEKRDTYSGRIDLKSGIIIDYTLAPLPNGQTMLTFVNVTDTVHIARALQEKN 582

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL KAD ++N FVQHVSYELR+PLTNIIGF+D+L+    G  N +Q +Y+ YI + S +
Sbjct: 583 EALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGPTNERQQEYLGYIHSESGV 642

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM L+   + + + + +    +  ++H  +I +       L  
Sbjct: 643 LLNIVNDILDLATLDAGIMILDIKPVHIAEAMAQAVARVEERLHGRHITLSQNISPSLKF 702

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  RL QIF  +L+NA++F+++ S +   A   +   IFSV N GS IP D+   +F
Sbjct: 703 MSADATRLHQIFVNVLNNAINFATEKSIIEFCANTQDDYIIFSVHNEGSDIPTDILDRIF 762

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF S+AH G R G GLGLS+V+SF+ LH G V I +     TT+ C  P K+
Sbjct: 763 KRFTSHAHHGGRAGAGLGLSLVKSFVELHDGRVEILTGMGQGTTVKCFFPHKK 815


>gi|304392409|ref|ZP_07374350.1| histidine kinase [Ahrensia sp. R2A130]
 gi|303295513|gb|EFL89872.1| histidine kinase [Ahrensia sp. R2A130]
          Length = 866

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/778 (32%), Positives = 431/778 (55%), Gaps = 41/778 (5%)

Query: 44  LIRQRNSLAKKVNETYSFLS-EICDQLSKYH---SLLTENNCLTIVWDGKDETPEIIGQL 99
           LIR+R +L    ++++  LS E+ D  +++    +LL   +   +VWDG++  P   G L
Sbjct: 82  LIRERRAL----DDSHRMLSLELADLKARHERAEALLDAPDQRVVVWDGEENPPTCRGAL 137

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRV 159
                 P    D ++F  W+  +       A ++LR   ++F++  ET+N   ++ +GR 
Sbjct: 138 VSTSGTPSESADFVAFGTWMAPNSAQSFDHAIQRLRSSAEAFEMPIETRNGNILEAQGRA 197

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            GS AF+R LSL G  + LA    +   L       + L +++   VW RD+   + WAN
Sbjct: 198 FGSHAFVRFLSLTGDRAALALLESQYTSLMATTDTMRTLLEAVPMPVWLRDREEGLTWAN 257

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI----------SSSALEKNFCETVSTL 269
            +Y K+ +T  +   +A+  ++ L     + R+            ++A    F + +   
Sbjct: 258 PAYVKSIDTADLA--QAVASNQHLLDAGDRNRVSEQLHGAHDADGNAAARTTFQKRLHAT 315

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQN 325
             G+ ++  +  + +  G+AG+A+D+S+   V   L  T +     L  L  A+AIFD  
Sbjct: 316 MAGDRRTVDVTVIEHDGGQAGLAVDMSEVEQVQSDLRRTLQGHAQTLDQLATAVAIFDAG 375

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
           + L FHN++  +LW +   FL + PSN      LR ++++  Q +W  W+  + +V+ ++
Sbjct: 376 QKLAFHNQALADLWALAPGFLDSAPSNAAFFNELRDSDRIANQPDWAKWRGELLAVHHAT 435

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           E  +  WHLP+G++L VI   + +GG  W+FEN+T Q+++E++Y  + +VQGET+DHL E
Sbjct: 436 EPAEHFWHLPDGRSLRVIANPHRQGGVTWVFENITEQLEMESRYIAMTQVQGETLDHLGE 495

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG--------- 496
            +AVF  DGR+KLSNPA + LW  E+ +++  T I  +A  C     E DG         
Sbjct: 496 AIAVFASDGRLKLSNPALQELWHLEDEQVAADTPIAEVARYCGEKLAE-DGTVDEPGQAE 554

Query: 497 ----WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
               WD     +T   D R ++ G L L+ D VL+Y+++PLPN QT+L+F +V+DSV  E
Sbjct: 555 SAMVWDELVTGVTGVTDSRDTIDGRLHLMEDRVLDYALVPLPNGQTLLSFADVSDSVSLE 614

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L E+NEAL  A  +KN F++HVSYE R+PLTNI GF ++L+    G LN KQ++Y+++
Sbjct: 615 QTLLERNEALEAAQRLKNEFLEHVSYEFRAPLTNIKGFAEILQGGAFGPLNEKQAEYIDH 674

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I++SS +L  LV+++LDLAT+DAG ++L+   + L D L   + ++   + +  + +++ 
Sbjct: 675 IASSSGVLHTLVDNLLDLATMDAGALELDLEQLDLADTLEAARSAVMPALKDRGLALEIN 734

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + D     FV D  ++ +I   +L NA  FS KG T+ L       D +  + + G  IP
Sbjct: 735 VEDDT--RFVGDSDQIQKILGNLLQNASRFSPKGGTIRLDGVTSGDDVVIRIADEGPGIP 792

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++  ++F RF S+A R  +RG GLGL++ ++   LHGG + + S+ E   T  CR+P
Sbjct: 793 AEIRDTIFERFSSSAVRSHKRGAGLGLAVAKALCGLHGGALELDSAVEEGATFICRLP 850


>gi|90420581|ref|ZP_01228488.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335309|gb|EAS49062.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 809

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 281/793 (35%), Positives = 444/793 (55%), Gaps = 28/793 (3%)

Query: 19  LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE 78
           L    I     +A ++  +++  + LIRQR + A + +   + L+E   +      LLT 
Sbjct: 2   LGPADILYLALVAMLIGASMLSAVFLIRQRAATATENDMLRASLAESRAEAEARTMLLTA 61

Query: 79  NNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG 138
                +V+ G    PEI+G L      P  +   LSF +W+     ++L  A   LR + 
Sbjct: 62  GEERLLVYSGPG-APEILGALPGPAGAPVEEKRFLSFGDWMAADVALRLQTAITALRHDA 120

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           + F +  +  +   I+  G+  G  A +R ++L+G+     E  +        I   + L
Sbjct: 121 EPFSIEIDLPHGRLIEASGKTIGGLAVVRFVALEGLRERAREAEIASADALAMIETMQNL 180

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL-FKEEIKKRMISSSA 257
           F++    VW RD+ G + W N +Y  + + +    + A    R++ F  E  +  I++  
Sbjct: 181 FNAAPIPVWLRDRNGRLGWVNNAYAASVDAK----EAADTLERQVEFLSEQDRLTIAARL 236

Query: 258 LEKN-FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EIL 312
            E+  F + +ST+   + +++ +V      G AG+AIDVS+   V  +L  T     E L
Sbjct: 237 SEQAVFSDKLSTVVAADRRNFAVVEATGPLGSAGLAIDVSETEQVRMELRQTINSQSETL 296

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNW 371
             LT A+A FD    L +HN +F  L+++  ++L + P +  LL+ LR+   LP E+L  
Sbjct: 297 DQLTTAVARFDDKTRLTYHNAAFQRLFDLTNSYLESEPDHLALLDHLRTRGILPVEKLFR 356

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
              ++   + Y+++E  +  WHL + +TL VI T  P+GG  W+FE++T ++DLE++   
Sbjct: 357 SEIQDQDLAAYRATEPTETMWHLADARTLRVIATPQPQGGATWIFEDITEKLDLESQVKA 416

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCS- 488
            V++Q ETID+LSE VAVFG DGR++LSNP+F  L+  + + L   P  H  +  A+ + 
Sbjct: 417 TVQLQRETIDYLSEAVAVFGSDGRLRLSNPSFAELFGLKPDYLLSRPRIHTLSDLASVAI 476

Query: 489 -RYYNESD---------GWDLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSIIPLPNAQ 537
            R  + +D         GW LF   +T+FD+ R+  + G + L S   + ++I+PLPN Q
Sbjct: 477 RRTISSADTDGTASAVGGWPLFCQSVTAFDETRRDTETGEMILSSGRTIAFAIVPLPNGQ 536

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TMLTF +++D+ +AER L EKNEAL +A++IKN FVQHV+YELRSPLTNIIGF+ LL+++
Sbjct: 537 TMLTFSDISDARQAERMLREKNEALEQANQIKNDFVQHVNYELRSPLTNIIGFSALLRST 596

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           + G LN +QS+Y++YI+ S++ LL +VNDILDLATVDAGIM+L+ S + +   +      
Sbjct: 597 ETGPLNERQSEYLDYIAVSTSSLLTIVNDILDLATVDAGIMELDLSEVDIVSTVEHAADG 656

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           I  ++ E  + ++ I   K G +F+AD  RL QI   +LSNA +F+  G+ V + A R  
Sbjct: 657 IRERLEEAEVTLR-IDLAKAGETFMADSHRLTQILFNLLSNAANFAPAGTAVDVVATRGP 715

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F+V + G  IP D    VF RF SN   G+  G GLGLSIV+SF+ LH G + I S
Sbjct: 716 RAISFAVTDRGPGIPADQIDRVFERFESNPAGGRHSGAGLGLSIVKSFVELHRGTICIQS 775

Query: 777 SDEGVTTINCRIP 789
           + +  TT+ C  P
Sbjct: 776 APDEGTTVICDFP 788


>gi|85714154|ref|ZP_01045143.1| Histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85699280|gb|EAQ37148.1| Histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 831

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/765 (34%), Positives = 419/765 (54%), Gaps = 12/765 (1%)

Query: 32  GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91
           G+L  +++  ILL+R R   A       + + E+  +  ++ +LL     + I W   ++
Sbjct: 61  GVLSFSVVAAILLMRTRIRAAANEQRLRAEIRELQSEADRFRALLFVEPQILISWGAGED 120

Query: 92  TPEIIGQLHQRIDIPQTDTD---LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148
            P+I G +   + +PQ       +L+F  WL     +++  A + LR EG+ F L   T 
Sbjct: 121 RPQISGDIA--LLLPQDAKQPLRILAFGTWLPPEPALQMDHAVDALRNEGEGFLLNLVTS 178

Query: 149 NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
               ++  GR  G  A +RI  L G+  +LAE TL+   L     + +    +  + +W 
Sbjct: 179 AGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAEMTLRHNNLLAETEMLRTFAGAAPWPLWA 238

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           R + G++ +AN +Y + TE        AI  + +L   E +  M  +      F   +  
Sbjct: 239 RSEDGNLSYANAAYARATEAA--GAADAIQRNLELLDSEDRIAMARALDDHAAFSARLPI 296

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQ 324
           +  G  + Y +  +  + G AGIA+D S+ +T+   L    +     L  L+  +A+FD 
Sbjct: 297 VIGGERRMYDVHALRAAGGSAGIALDASEAVTLRQTLERMADAHRRTLDQLSSGVAVFDG 356

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
            R L F+N S+  LW++D AFL  NP +  +L+ LR+A KLPEQ +++ WK  +   Y++
Sbjct: 357 RRRLAFYNDSYRRLWDLDRAFLDGNPDDSSVLDRLRAARKLPEQPDFRAWKARLHEAYRA 416

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           +E  KD W+LP+G+ L ++ T NP GG  ++F+++T  +DL  +Y+ L+ VQ ET+D L+
Sbjct: 417 NEAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLDLARRYDRLITVQRETLDSLT 476

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           E VAVFG +GR +L NPAF  +WK     L+   HI  + A C   ++++D W      +
Sbjct: 477 EAVAVFGSNGRAQLFNPAFARMWKLSAEALAQQPHIDTVEAWCKPLFDDNDAWRTIHKAV 536

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T  D+ R ++   LE    SVL+   +PLP+  TMLTF ++TDS   ERAL E+N+AL  
Sbjct: 537 TGIDN-RTAVPLKLERKDGSVLDCMTMPLPDGATMLTFHDITDSENVERALRERNDALET 595

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD++K  FV HVSYELRSPLT IIGF  L+     G L  KQ++YV YI++S+  LL L 
Sbjct: 596 ADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLTEKQAEYVNYITSSTDALLALT 655

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N+ILDLAT+DAG M L    + +   +    + I  ++  ++I + V  D  +G+F+ D 
Sbjct: 656 NNILDLATIDAGAMTLELGPVDVRKTIAAAAEGIQDRLARDHIVLNVDVDPDIGNFIGDE 715

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +R++Q+   +L+NA +FS   + + + A R      F+V + G  IP D+   VF+ F S
Sbjct: 716 RRIVQVLYNLLANAANFSPPNAVITVSARRTEHSVRFAVMDEGPGIPPDVKDKVFDWFES 775

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +A+  + RG GLGLS+V SF+ LHGG V   S+    T + C  P
Sbjct: 776 HANGSRHRGAGLGLSLVRSFVELHGGRVHFDSTITSGTRVVCDFP 820


>gi|319404942|emb|CBI78544.1| sensor histidine kinase protein [Bartonella sp. AR 15-3]
          Length = 820

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 284/773 (36%), Positives = 432/773 (55%), Gaps = 19/773 (2%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           I +FG+IA   L  +I + ++I  + +L K      + LSE   +L +Y  LL +     
Sbjct: 58  IVIFGSIACSSL--LICVTIIINTKRALWKSWTMIQAHLSE---KLEQYEWLLEKTGQCL 112

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
            +WD     P  +G +           D   F+ WL+     +L +A  +LR  G SF+ 
Sbjct: 113 FIWDNPTALPYTVGNIPTLQKAGIYKKDFQYFDKWLEKSSLQQLDQALIELRYNGCSFEF 172

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T     +++ G ++G+ A +R   +    SE      +  ++   + +   L + + 
Sbjct: 173 SVTTTTKILLQVTGIIAGTAAIVRFQDISVQQSENIRLQKEVTQILTELKIQHNLLEHIQ 232

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW RD  G I + N ++++ T      FQ+    +  LF E  +    ++   E  F 
Sbjct: 233 EPVWIRDCEGKICFTNRAFREMTN-----FQEK-NNTVDLFDETTQ---CTTDETETIFQ 283

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQ---LTHTYEILHNLTVAI 319
           + V T+  G    + + R+    G A  A D S  E  V +    L    E L  ++ A+
Sbjct: 284 KHVYTVVKGERHHFHLTRITTKEGMAAFARDDSAYENLVKEMERILQSHCETLDQISTAV 343

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD N+ L+F N +F  LW ++++FL   PS+  LLE LR    + E  +W+ WKE +F
Sbjct: 344 AIFDANQKLKFCNHAFKILWPLEISFLENEPSHSLLLEHLREKGFIGEYPDWRAWKEELF 403

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+ +E+++  W+LP+G+T+ VI + +P+GG  W++ENLT ++DLE +YNTL+K+QGET
Sbjct: 404 KAYRQTESNQQIWNLPDGRTVRVISSPHPQGGITWLYENLTEKIDLERRYNTLIKIQGET 463

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VFG DGR++LSNP+   LW    N    GTHI  +   CS      + W  
Sbjct: 464 LDKLSEGVVVFGTDGRLRLSNPSLSKLWSLPHNLPVEGTHITELENHCSAL-TIGEEWKQ 522

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   IT F ++R    G ++L S  +++Y++ PL N QTMLTF NVTD++   RAL EKN
Sbjct: 523 FTQFITGFAEKRDIYSGRIDLKSGIIIDYTLTPLSNGQTMLTFANVTDTIHIARALQEKN 582

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL KAD ++N FVQHVSYELR+PLTNIIGF+D+L+    GS N +Q +Y+ YI + S +
Sbjct: 583 EALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSTNERQKEYLGYIHSESGV 642

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM L+   + + + + +    +  ++H  +I +       L  
Sbjct: 643 LLNIVNDILDLATLDAGIMILDIKPVQIAEAMAQAVARVEERLHGRHITLLQNISPSLKF 702

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  RL QIF  +LSNA++F+++ ST+   A   +   +FSV N GS IP D+   +F
Sbjct: 703 MSADATRLHQIFVNVLSNAINFATEKSTIEFCADTQDNYIVFSVHNEGSDIPTDILDRIF 762

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF S++H G R G GLGLS+V+SF+ LH G V I +     TT+ C  P+++
Sbjct: 763 KRFTSHSHHGGRAGAGLGLSLVKSFVELHNGRVEIFTGMGKGTTVRCFFPNQK 815


>gi|75674244|ref|YP_316665.1| histidine kinase [Nitrobacter winogradskyi Nb-255]
 gi|74419114|gb|ABA03313.1| histidine kinase [Nitrobacter winogradskyi Nb-255]
          Length = 838

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/765 (33%), Positives = 407/765 (53%), Gaps = 12/765 (1%)

Query: 32  GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91
           G+L  +++  ILL+R R   A       S L E+  +  ++ +LL     + I W   +E
Sbjct: 68  GVLSFSVVAAILLMRTRIRAAANEQRLRSELRELQSEADRFRALLFVEPQILISWGAGEE 127

Query: 92  TPEIIGQLHQRIDIPQTDTD---LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148
            P+I G +   + +PQ       +L+F  WL     +++  A + LR  G+ F L   T 
Sbjct: 128 RPQISGDIA--LLLPQDAKQPLRILAFGTWLPPEPALQMDHAVDALRSAGEGFLLNLVTS 185

Query: 149 NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
               ++  GR  G  A +RI  L G+  +LAE TL+   L     + +    +  + +W 
Sbjct: 186 AGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAEMTLRHDSLLAETEMLRAFATAAPWPLWA 245

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           R + G + +AN +Y + TE        AI  + +L   E +  M  +      F   +  
Sbjct: 246 RGKDGKLSFANQAYARATEAADSA--DAIQRNLELLDSEDRTAMSRALNDHATFAARLPI 303

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQ 324
           +  G  + Y +  +    G AGIA+D S+   ++  L    +     L  L+  +A+FD 
Sbjct: 304 IIGGERRMYDVHALRTGGGSAGIALDASEATALSGALARMADAHRRTLDQLSSGVAVFDG 363

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
            R L F+N S+  LW++D  FL  +P +  +L+ LR+  KLPEQ +++ WK  +   Y++
Sbjct: 364 QRRLAFYNDSYRRLWDLDRPFLDGHPDDSSVLDRLRAGRKLPEQPDFRAWKARLHEAYRA 423

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           +E  KD W+LP+G+ L ++ T NP GG  ++F+++T  +DL  +Y+ L+ VQ ET+D L+
Sbjct: 424 NEAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLDLARRYDRLINVQRETLDSLT 483

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           E VAVFG +GR +L NPAF  +WK     L+   HI  + A C   +++ D W      +
Sbjct: 484 EAVAVFGSNGRAQLFNPAFARMWKLSPEALAQQPHIDTVEAWCKPLFDDDDAWRTIHKAV 543

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T  D+ R ++   LE    S+L+   +PLP+  TMLTF ++TDS   ERAL E+N+AL  
Sbjct: 544 TGIDN-RTAVPLKLERKDGSILDCMTMPLPDGATMLTFHDITDSENVERALRERNDALEA 602

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD++K  FV HVSYELRSPLT IIGF  L+     G L  KQ++YV YI++S+  LL L 
Sbjct: 603 ADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLTEKQAEYVNYITSSTDALLALT 662

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N+ILDLAT+DAG M L    + +   +    + I  ++  + I + V  D  +G F+ D 
Sbjct: 663 NNILDLATIDAGAMTLELGPVDVRKTIAAAAEGIQDRLTRDRIVLNVDVDPDIGDFIGDE 722

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +R++Q+   +L+NA  FS   + + + A R      F+V + G  IP D+    F+ F S
Sbjct: 723 RRIIQVLYNLLANAAGFSPPDAVITVSARRTEHSVRFAVMDEGPGIPPDVRDKAFDWFES 782

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A+  + RG GLGLS+V SF+ LHGG V    + +  T + C  P
Sbjct: 783 YANGSRHRGAGLGLSLVRSFVELHGGRVHFDPAIKSGTRVVCDFP 827


>gi|299133352|ref|ZP_07026547.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298593489|gb|EFI53689.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 834

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 271/773 (35%), Positives = 414/773 (53%), Gaps = 19/773 (2%)

Query: 31  AGMLLTTIIPIILLIRQR---NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD 87
           A +L  +++  ILL+R R    ++  ++      L    D+L    +LL     + I W 
Sbjct: 62  ASVLCFSVVSAILLMRTRLRAEAMEAQLRADNQSLQHESDRL---RALLFAEPQVLIAWS 118

Query: 88  GKDETPEIIGQLHQRIDIPQ----TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
             DE P+I G +   + +PQ    +   +L+F  WL     + +  A + LR+ G+SF L
Sbjct: 119 AGDERPDITGDIA--LLMPQGQATSAQRVLAFGTWLLPEQALAMDHAVDALRERGESFLL 176

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
                N  AI+  GR  G  A +RI  L G+  ELAE T +   L       +     + 
Sbjct: 177 TMSASNGRAIEAIGRAVGGQAIVRIRELSGVRLELAEMTQRHLHLIEETDALRAFAAEIP 236

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             +W R   G +     +       E      AI    +L   E +  M  + A  K + 
Sbjct: 237 QPLWARRANGTL--RYANAAYARAAEAANPSDAIERGVELLDSEDRAAMRHALAEGKPYR 294

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAI 319
             +     G  + + +     + G  G+AID S+ +   D L    +    +L  L+  +
Sbjct: 295 ARLPVAIGGERRIFDVFAYNVTDGSVGVAIDCSETVAFKDALMRMADAHRRMLDQLSSGV 354

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           A+FD ++ L F+N S+  LW++D AFL +NPS+  +LE LR+  K+PEQ +++ WK  + 
Sbjct: 355 AVFDADKRLAFYNDSYRRLWDLDRAFLDSNPSDSSVLEKLRAERKIPEQPDFRAWKARLH 414

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y++ E  K+TW+LP+G+ + ++ T NP GG  ++F+++T  + L+ +++ L++VQ ET
Sbjct: 415 EAYRAIEPAKETWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLKLQRQHDGLLRVQRET 474

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D+LSE VAVFG +GR +L NP F  LWK     L    HI  I   C   + ++  W  
Sbjct: 475 LDNLSEAVAVFGGNGRAQLFNPPFAQLWKLSTEALQQQPHIETIEQWCRPLFEDAATWQA 534

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             A IT  D  R +LQ  +E    SVL+ + IPLP+  TML F +VTDSV  ERAL E+N
Sbjct: 535 IRAAITGID-SRTALQTRIERKDGSVLDCTTIPLPDGATMLAFQDVTDSVNVERALRERN 593

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +AL  AD++K  FV HVSYELRSPLT IIGF   L     G +  KQS+Y+ YI+ S+  
Sbjct: 594 DALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPATGPMTVKQSEYLNYITTSTNA 653

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++N+ILDLAT++AG M L+   + L   + E    +  ++  +NIR+ +  D     
Sbjct: 654 LLAIINNILDLATINAGAMTLDLGPVDLRKTVEEATAGLQDRLVHDNIRLVIDIDPSAAG 713

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F+AD +R++QIF  +L+NA+ FS    TV L A R+NG    +V + G  IP+D+   VF
Sbjct: 714 FIADERRIVQIFYNLLANAIGFSPTNGTVRLNAWRENGLICCAVADAGPGIPDDVRDKVF 773

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           + F S A+  + RG GLGLS+V SF+ LHGG V + S     TT+ C  P+ +
Sbjct: 774 DWFESRANGSRHRGAGLGLSLVRSFVELHGGRVRVDSVVGEGTTVTCEFPADQ 826


>gi|27375868|ref|NP_767397.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27349006|dbj|BAC46022.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 862

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/760 (34%), Positives = 413/760 (54%), Gaps = 7/760 (0%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           +++  ILL+R R   AK      + + E+  Q  ++ +LL     + I W   D   +I 
Sbjct: 98  SVMAAILLMRTRVRTAKNEARLRARIGELQLQADRFGALLFAEPQILISWPAGDNRAQIS 157

Query: 97  GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIE 156
           G +   +    +   +L+F  WL     +++  A + LR  G  F L   T +   ++  
Sbjct: 158 GDVSMVLPRDSSPQRVLAFGTWLPPEPALQMDHAVDALRDRGDGFQLTLTTAHGHTLEAI 217

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           GR  G  A +RI  L G+  +LAET L+ K LS+   + +    +  + +W + + G + 
Sbjct: 218 GRAIGGQAIVRIRELSGLRRDLAETNLRYKALSDETEMLRGFAAAAPWPIWAKGENGALT 277

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
           +AN +Y + TE     F  A     +L     +  M        NF   +  +  G  + 
Sbjct: 278 FANPAYVRATEAAS--FSDAHERKLELLDSADRGAMERGLKDAANFTSRLPIVIGGERRI 335

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
           Y +  V    G  G+AID S+   ++  L    E     L  L+  +A+FD +R L F+N
Sbjct: 336 YDVRAVNVGSGSVGVAIDASEADALSSALVRMAEAHRRTLDQLSSGVAVFDGHRRLAFYN 395

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            S+  LW++D  FL  NP +  +L+ LR+A KLPEQ +++ WK  +   Y++ E  KDTW
Sbjct: 396 DSYRRLWDLDRTFLDANPDDSSVLDQLRAARKLPEQPDFRAWKAKLHEAYRAVEAAKDTW 455

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           +LP+G+ L V+ T NP GG  ++F+++T  ++L  +++ +++VQ ET+D L+EGVAVFG 
Sbjct: 456 YLPDGRALSVVTTPNPEGGVTYLFDDVTESLELARRFDGMIRVQRETLDSLAEGVAVFGS 515

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +G+ +L NPAF  +WK   + +    HI+ +   C + +++   W      +TS +  R 
Sbjct: 516 NGKAQLFNPAFVRMWKLSSDAMRDEPHIQTVEGWCHQLFDDPVVWRQIREAVTSIE-SRA 574

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +   L+    SVL+  I PL +  TMLTF ++TD+   ERAL E+NEAL  AD++K  F
Sbjct: 575 DVPLKLDRKDGSVLDGMIRPLHDGATMLTFQDITDTENVERALRERNEALEAADQMKVDF 634

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           V HVSYELRSPLT IIGF   L     G L  KQ++Y++Y++ S+  LL L N+ILDLAT
Sbjct: 635 VHHVSYELRSPLTTIIGFAHFLSDPSTGPLTPKQAEYLDYVTKSTNALLALTNNILDLAT 694

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +DAG MKL    + ++  +    + I  ++  + IR+KV     +GSF+ D +R++Q+  
Sbjct: 695 IDAGAMKLELGPVDVSKTIELAAEGIQDRLATDRIRLKVEIAPDIGSFIGDEKRVVQVLY 754

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +L+NA+ FS + STV + A R     +F+V ++G  IP DM   VFN F S +   + R
Sbjct: 755 NLLANAVGFSPQDSTVGISARRTEHSVVFTVTDSGPGIPADMKDKVFNWFESRSQGSRHR 814

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G GLGLS+V SF+ LHGG V + S     T + C  P+ +
Sbjct: 815 GAGLGLSLVRSFVELHGGKVRVDSIVGRGTVVICDFPTDQ 854


>gi|298290314|ref|YP_003692253.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
 gi|296926825|gb|ADH87634.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
          Length = 839

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/764 (33%), Positives = 408/764 (53%), Gaps = 8/764 (1%)

Query: 30  IAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGK 89
           + G+++      I+ +R R    ++    +  +S +  Q+ +  +LL     + +VW   
Sbjct: 69  VVGLIVFATTTAIVHLRYRRQSLRREMAAFGEISRLEAQIDEARALLMAEPQIVVVWRDP 128

Query: 90  DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
              PEIIG       +      +L+F +WL      ++  A ++LR  G        TQ+
Sbjct: 129 AADPEIIGNTPAFTGV-AAPARILAFGSWLTPASAREIEAAVDRLRGRGTPLAATLATQD 187

Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
              ++ +GR  G+   LR+  + G+  + A+     + L    S  + L D+L    W  
Sbjct: 188 GRFVEADGRPVGAAVVLRLRDITGVRLDQAQLEAAYRALDAESSALRTLLDALPAPAWVD 247

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
            + G + W+N +Y    E        A      L  ++ + +   + A    F   +  +
Sbjct: 248 GEDGRLRWSNAAYAHAVEARDA--SDAASRGLMLLDQQSRTQAEKAHAASLPFKARLPVV 305

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQN 325
             G  +   ++ V    G AGIA+D ++   V  +L          L  L  A+AIF  +
Sbjct: 306 VAGTRRVLDVLEVPAGGGAAGIALDATEAEVVRAELAQVVGAHRRTLDQLATAVAIFGAD 365

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
           + L FHN ++  L+++D AFL   P++  +L+ LR+A +LPEQ +++ W+E + + Y++ 
Sbjct: 366 QRLVFHNAAYARLFDLDAAFLDDRPTDGAVLDRLRAARRLPEQADFRLWREELHAAYRAI 425

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           E  +  WHLP G+TL V+   NP GG  ++F+ +T ++ LE+++N+L ++Q ET+D L+E
Sbjct: 426 EPREHWWHLPGGRTLRVVTAPNPEGGITYLFDEVTERLALESRFNSLTRIQSETLDALAE 485

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            VAVFG DGR+ L N AFR LW+ +   L    HI  +AA C     ++  W    A +T
Sbjct: 486 AVAVFGSDGRLGLVNSAFRRLWQLDAAMLDAHPHIDAVAAACRPLTADAAVWARLTATVT 545

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             +  R   +  +E    ++L+ S  PLP+  T++T  +VTDSV  ERAL E+N+AL  A
Sbjct: 546 GIE-ARMPTEFRMERNDRTILDGSTQPLPDGATLVTLRDVTDSVNVERALVERNDALVAA 604

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K++FV HVSYELRSPLT IIGF  LL  + +G LN KQ  YV +I+ SS  LL ++N
Sbjct: 605 DHLKSTFVSHVSYELRSPLTTIIGFAQLLDDTGIGPLNVKQRAYVNHITESSAALLAIIN 664

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDLAT+DAG M L  + + +   ++   + +  ++ E  IR+ +      GSF AD +
Sbjct: 665 DILDLATIDAGSMALELTEVDVRAAMDAAAEGVRDRLAEGGIRLSIELQNAAGSFRADAK 724

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ QI   +LSNA+ F+ +GSTV L A R     IF V++ G  +P ++    F+RF S+
Sbjct: 725 RVRQILYNLLSNAVGFAPEGSTVTLSAERREDGVIFRVRDMGPGVPPEIGARAFDRFESH 784

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + RGVGLGLSIV S + LHGG VS++ +  G T + C  P
Sbjct: 785 TAGSRHRGVGLGLSIVRSLVALHGGTVSLAPAQGGGTLVTCIFP 828


>gi|92115685|ref|YP_575414.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
 gi|91798579|gb|ABE60954.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
          Length = 838

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/765 (33%), Positives = 418/765 (54%), Gaps = 12/765 (1%)

Query: 32  GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91
           G+L  +++  ILL+R R   A       + + E+     ++ +LL     + I W   ++
Sbjct: 68  GVLGFSVVAAILLMRTRIRAAANEQRLRTEIRELQSDADRFRALLFAEPQVLISWGAGED 127

Query: 92  TPEIIGQLHQRIDIPQ---TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148
            P+I G +   + +PQ       +L+F  WL     +++  A + LR  G+ F L   T 
Sbjct: 128 RPQISGDIA--LLLPQDAKPPLRILAFGTWLPPEPALQMDHAVDALRNAGEGFLLNLVTS 185

Query: 149 NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
               ++  GR  G  A +RI  L G+  +LAETTL+   L     + +    +  + +W 
Sbjct: 186 AGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAETTLRHNSLLAETGMLRAFAAAAPWPLWA 245

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           R + G++ +AN +Y + TE        AI  + +L   + +  M  +      F   +  
Sbjct: 246 RGEDGNLNFANAAYARATEAASAT--DAIQRNLELLDSDDRIAMARALNDHAAFAARLPV 303

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQ 324
           +  G  + Y +  +  + G AGIA+D S+   ++  L    +     L  L+  +A+FD 
Sbjct: 304 VIGGERRMYDVHALRAAGGSAGIALDASETAALSQALERMADAHRRTLDQLSSGVAVFDG 363

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
            R L F+N S+  LW++D AFL  NP++  +L+ LR+A KLPEQ +++ WK  +   Y++
Sbjct: 364 QRRLAFYNDSYRRLWDLDRAFLDGNPNDSSVLDRLRAARKLPEQPDFRAWKARLHEAYRA 423

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           +E  KD W+LP+G+ L ++ T NP GG  ++F+++T  ++L  +Y+ L+ VQ ET+D L+
Sbjct: 424 NEAAKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLELARRYDRLITVQRETLDSLT 483

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           E VAVFG +GR +L NPAF  +WK     LS   HI  +   C   +++ D W      +
Sbjct: 484 EAVAVFGSNGRAQLFNPAFARMWKLSPEALSQQPHIDTVEGWCKPLFDDDDAWQTIRNAV 543

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T  D+ R +++  LE    SVL+   +PLP+  TMLTF ++TDS   ERAL E+N+AL  
Sbjct: 544 TGIDN-RSAVRLKLERKDGSVLDCMTMPLPDGATMLTFHDITDSENVERALRERNDALET 602

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD++K  FV HVSYELRSPLT IIGF  L+     G L  KQ+QY++YI++S+  LL L 
Sbjct: 603 ADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLTEKQAQYIDYITSSTDALLALT 662

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N+ILDLAT+DAG M L    + +   +    + I  ++    I ++V  D  +G+F+ D 
Sbjct: 663 NNILDLATIDAGAMTLELGPVDVRKTIAAATEGIQDRLTRERIVLEVDVDPDIGNFIGDE 722

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +R++Q+   +L+NA  FS +G+ + + A R      F+V ++G  IP ++   VF+ F S
Sbjct: 723 RRIIQVLYNLLANAAGFSPQGAVIAVSARRTAHSVSFAVTDDGPGIPPEVKDKVFDWFES 782

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A+  + RG GLGLS+V SF+ LHGG V    + +  T + C  P
Sbjct: 783 RANGSRHRGAGLGLSLVRSFVELHGGRVHFDPTVKRGTRVVCDFP 827


>gi|2801651|gb|AAB97416.1| putative sensor protein [Bradyrhizobium japonicum]
          Length = 873

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 264/790 (33%), Positives = 424/790 (53%), Gaps = 11/790 (1%)

Query: 10  IGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQL 69
           +G   E+      ++ V  T   +L  +++  ILL+R R   AK      + + E+  Q 
Sbjct: 80  VGTLSELLDFNRQELVVLVTALALLGFSVMAAILLMRTRVRTAKNEARLRARIGELQLQA 139

Query: 70  SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSK 129
            ++ +LL     + I W   D   +I G +   +    +   +L+F  WL     +++  
Sbjct: 140 DRFGALLFAEPQILISWPAGDNRAQISGDVSMVLPRDSSPQRVLAFGTWLSPEPALQMDH 199

Query: 130 ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189
           A + LR  G  F L   T +   ++  GR  G  A +RI  L G+  +LAET L+ K LS
Sbjct: 200 AVDALRDRGDGFQLTLTTAHGHTLEAIGRAIGGQAIVRIRELSGLRRDLAETNLRYKALS 259

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI--VFQKAIGESRKLFKEE 247
           +   + +    +  + +W + + G + +AN +Y + TE      V ++    +  L    
Sbjct: 260 DETEMLRGFAAAAPWPIWAKGENGALTFANPAYVRATEAASFSDVHER---HASSLLDSA 316

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            +  M        NF   +  +   + + Y +  V    G  G+AID S+   ++  L  
Sbjct: 317 DRGAMERGLKDAANFTSRLPIVIAASARIYDVRAVNVGSGSVGVAIDASEADALSSALVR 376

Query: 308 TYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
             E     L  L+  +A+FD +R L F+N S+  LW++D  FL  NP +  +L+ LR+A 
Sbjct: 377 MAEAHRRTLDQLSSGVAVFDGHRRLAFYNDSYRRLWDLDRTFLDANPDDSSVLDQLRAAR 436

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           KLPEQ +++ WK  +   Y++ E  KDTW+LP+G+ L V+ T NP GG  ++F+++T  +
Sbjct: 437 KLPEQPDFRAWKAKLHEAYRAVEAAKDTWYLPDGRALSVVTTPNPEGGVTYLFDDVTESL 496

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +L  +++ +++VQ ET+D L+EGVAVFG +G+ +L NPAF  +WK   + +    HI+ +
Sbjct: 497 ELARRFDGMIRVQRETLDSLAEGVAVFGSNGKAQLFNPAFVRMWKLSSDAMRDEPHIQTV 556

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
              C + +++   W      +TS  + R  +   L+    SVL+  I PL +  TMLTF 
Sbjct: 557 EGWCHQLFDDPVVWRQIREAVTSI-ESRADVPLKLDRKDGSVLDGMIRPLHDGATMLTFQ 615

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD+   ERAL E+NEAL  AD++K  FV HVSYELRSPLT IIGF   L     G L 
Sbjct: 616 DITDTENVERALRERNEALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPSTGPLT 675

Query: 604 SKQSQYVEYISASSTIL-LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            KQ++Y++Y++ S+  L L L N+ILDLAT+DAG MKL    + ++  +    + I  ++
Sbjct: 676 PKQAEYLDYVTKSTNALALALTNNILDLATIDAGAMKLELGPVDVSKTIELAAEGIQDRL 735

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + IR+KV     +GSF+ D +R++Q+   +L+NA+ FS + STV + A R     +F+
Sbjct: 736 ATDRIRLKVEIAPDIGSFIGDEKRVVQVLYNLLANAVGFSPQDSTVGISARRTEHSVVFT 795

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  IP DM   VFN F S +   + RG GLGLS+V SF+ LHGG V + S     T
Sbjct: 796 VTDSGPGIPADMKDKVFNWFESRSQGSRHRGAGLGLSLVRSFVELHGGKVRVDSIVGRGT 855

Query: 783 TINCRIPSKE 792
            + C  P+ +
Sbjct: 856 VVICDFPTDQ 865


>gi|90421906|ref|YP_530276.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90103920|gb|ABD85957.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 843

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/768 (33%), Positives = 412/768 (53%), Gaps = 22/768 (2%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           +++  ILL+R R   A         +  +  +  ++ +LL   + + I W   D  P+I 
Sbjct: 72  SVVAAILLMRTRLRAAACETRLRGNIQTLQVEADRFRALLFAESQVLIAWAAGDSRPQIS 131

Query: 97  GQLHQRIDIPQT---------DTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAET 147
           G +   + IPQ             +L+F  W+     +K+  A + L + G+ F L   T
Sbjct: 132 GDVS--LLIPQAGLAADQSVQSQRILAFGTWMPPEPALKMDHAVDALLESGEGFQLNLVT 189

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +I+  GR  G  A +R+  L G+  ELAE T + K L     + +    +  + +W
Sbjct: 190 STGRSIEAVGRAVGGQAIVRMRELSGLRRELAEMTQRHKTLQEETEMLRDFAAAAPWPIW 249

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE--KNFCET 265
            R  AG++ +AN +Y + TE   +   +AI  + +L   E   R   S AL    NF   
Sbjct: 250 TRRDAGELNFANAAYARATEAGSVA--EAIERNLELL--ESNDRTALSRALNDNANFSAR 305

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI 321
           +  +  G  + Y +  +    G AG AID S+   +   L    E     L  L+  +A+
Sbjct: 306 LPIVVRGERRIYDVHAMKVRGGSAGAAIDASEAYALGAALVRMAEAHRRTLDQLSSGVAV 365

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           FD+   L F+N S+  LW++D AFL +NP +  +L+ LR+A KLPEQ N++ WK  +   
Sbjct: 366 FDEQHRLAFYNDSYRRLWDLDRAFLDSNPDDSSVLDRLRAARKLPEQPNFREWKMRLHEA 425

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y++ +  KD W+LP+G+ + ++ T NP GG  ++F+++T  ++L  +++ L+ VQ ET+D
Sbjct: 426 YRAVDPAKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLELARRFDGLINVQRETLD 485

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           +L+E VAVFG +G  +L NP F  +W      L    HI  +   C   +++   W    
Sbjct: 486 NLAEAVAVFGSNGCARLFNPPFARMWNLSPEALQLQPHIETVVDWCRPLFDDPAIWQTLR 545

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             IT  ++ R ++   LE    SVL    +PLP+  TMLTF ++TD+   ERAL E+NEA
Sbjct: 546 GAITGIEN-RIAIPLKLERRDGSVLNCMTMPLPDGATMLTFQDITDTENVERALRERNEA 604

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  AD++K  FV HVSYELRSPLT IIGF   L     G L  KQ +Y+ YI+ S+  LL
Sbjct: 605 LETADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPSTGPLTEKQEEYLSYITTSTNALL 664

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++N+ILDLAT+DAG M LN   + +   + +  + I  ++  ++I ++V +   +G F+
Sbjct: 665 AIINNILDLATIDAGAMTLNLGQVDIRKAIADAIEGIQDRLARDHIVLEVNAAPDVGHFI 724

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +R++Q+   +L+NA+ FS + + + L A R     +F+V + G  IP D+ + VF+ 
Sbjct: 725 ADERRVVQVLYNLLANAVGFSPQHAAITLSAKRTEQTVVFTVTDTGPGIPPDVKEKVFDW 784

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F S ++  + RG GLGLS+V SF+ LHGG+V I S     TT+ C  P
Sbjct: 785 FESRSNGSRHRGAGLGLSLVRSFVELHGGNVRIDSVVGKGTTLTCSFP 832


>gi|218508683|ref|ZP_03506561.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Brasil 5]
          Length = 314

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/314 (68%), Positives = 258/314 (82%)

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           QLNWK+WKE   SVY++ +T  D WHLPNGQTL V  T++P+GG  W+FENLT QVDLET
Sbjct: 1   QLNWKSWKEAALSVYRALDTQSDLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLET 60

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +YNTLVKVQGETIDHLSEGVAVFGPDGRI+LSNPAFR+LW   E    PGTHIR +   C
Sbjct: 61  RYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEAC 120

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +  Y+  DGW  FA +ITSFDDER+S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TD
Sbjct: 121 APSYDRPDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTD 180

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           SVRAERALTEKNEALRKADE+KN FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q+
Sbjct: 181 SVRAERALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQA 240

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+++IS SS++LL LVNDILDLATVDAGIM+LNY+ I LNDLL++V   IA ++ E+ +
Sbjct: 241 EYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGV 300

Query: 668 RIKVISDGKLGSFV 681
            +++ +   LGS V
Sbjct: 301 ALEITAPAYLGSIV 314


>gi|115522493|ref|YP_779404.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
 gi|115516440|gb|ABJ04424.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
          Length = 843

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/770 (33%), Positives = 418/770 (54%), Gaps = 14/770 (1%)

Query: 31  AGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD 90
           AG+L  +++  ILL+R R   A         +  +  +  ++ +LL     + I W   D
Sbjct: 66  AGVLGFSVLATILLMRTRLRAAANEARLRGEVQTLQAEADRFRALLFAEPQVLISWAAGD 125

Query: 91  ETPEIIGQLHQRID---IPQTDT----DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
             P+I G +   I    +PQ  T     +L+F  W+     +++  A + L + G+ F L
Sbjct: 126 SHPQISGDISLLIPPAMLPQDPTLQPQRVLAFGTWMPPEPALRMDHAVDALLESGEGFLL 185

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T    +I+  GR  G  A +RI  L G+  ELAETT + K L     + +    +  
Sbjct: 186 HLVTAGGRSIEAMGRAVGGQAIVRIRELSGLRRELAETTQRYKSLQEETEMLRDFVFAAP 245

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
           + +W R   G + +AN +Y + +E   I    A+ +S +L     +  +  + A   +F 
Sbjct: 246 WPIWTRRADGALTFANAAYARASEAASIT--DAVTQSVELLDSSDRAAVARALADGTSFN 303

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAI 319
             +  +  G  + + +       G AGIAID ++   +   L    +     L  L+  +
Sbjct: 304 ARLPIVVGGERRIFDVYAQKVRGGSAGIAIDANEAAALAAALVRMADAHRRTLDQLSSGV 363

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           A+FD  + L F+N S+  LW++D  FL +NP +  +L+ LR+A KLPEQ +++ WK  + 
Sbjct: 364 AVFDAQQRLAFYNDSYRRLWDLDRVFLDSNPDDSSVLDRLRAARKLPEQPDFRAWKTRLH 423

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y++ +  KD W+LP+G+TL ++ T NP GG  ++F+++T   DL  +Y  L+ VQ ET
Sbjct: 424 EAYRAVDAVKDVWYLPDGRTLSMVTTPNPEGGVTYLFDDVTESFDLARRYGALINVQRET 483

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D+L+E VAVFG +G  +L NP F  LW      L    HI  +   C   +++   W  
Sbjct: 484 LDNLTEAVAVFGSNGCAQLFNPPFARLWNLSPEALQLQPHIETVIGWCRPLFDDDAIWQT 543

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             + IT  ++ R ++   L+    SVL  + +PLP+  TMLTF + TD+   ERAL E+N
Sbjct: 544 LRSAITGIEN-RVAVPLKLQRSDGSVLACTTMPLPDGATMLTFQDNTDTENVERALRERN 602

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL  AD++K  FV HVSYELRSPLT IIGF   L  +  G L  KQ++Y+ YI+ S+  
Sbjct: 603 EALETADQMKVKFVHHVSYELRSPLTTIIGFAHFLADASTGPLTEKQAEYLSYITTSTNA 662

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++N+ILDLAT+DAG M LN   + +   ++   + I  ++  ++IR+++  D ++G 
Sbjct: 663 LLAIINNILDLATIDAGAMALNLGPVDIRKAIDAAVEGIQDRLARDHIRLEIEVDPEIGR 722

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F+AD +R++Q+   +L+NA+ FS +   + LKAAR   + +F+V + G  IP ++   VF
Sbjct: 723 FLADERRVVQVLYNLLANAVGFSPEHGAITLKAARSEKEVVFTVIDKGPGIPPEVKDKVF 782

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + F S++   + RG GLGLS+V SF+ LHGG V ++S     TT+ C  P
Sbjct: 783 DWFESHSKGSRHRGAGLGLSLVRSFVELHGGKVEVNSVLGQGTTLTCSFP 832


>gi|91974689|ref|YP_567348.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
 gi|91681145|gb|ABE37447.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
          Length = 837

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/775 (32%), Positives = 419/775 (54%), Gaps = 12/775 (1%)

Query: 23  KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL 82
           ++      A +L  +++  ILL+R R   A +  +  + +  +  +  ++ +LL     +
Sbjct: 56  ELVTLAMAASVLGFSVVSAILLMRTRQRAAAQEAQLRADVQTLQAESDRFRALLFAEPQV 115

Query: 83  TIVWDGKDETPEIIGQ----LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG 138
            I W   D+ P+I G     L Q +   Q    +L+F  WL     +++  A + L  +G
Sbjct: 116 LISWSAGDDRPQISGDTALLLPQEVANAQPQR-VLAFGTWLPPEPALQMDHAVDALLDKG 174

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           ++F L   T    +I+  GR  G  A LRI  L GI  ELA+ + + K L +   + +  
Sbjct: 175 EAFLLHLTTSTGRSIEAMGRAIGGQAILRIRELSGIRRELADMSRRFKSLQDESEMLRGF 234

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            ++  + +W R  +G++ +AN +Y + T+        A+  + +L     +  +  +   
Sbjct: 235 ANAAPWPIWTRRASGELSFANAAYARATDAGSAA--DAVNRNLELLDSNDRGNLARALND 292

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHN 314
              F   +  +  G  + + +  +  S G AGIA+D S+   +   L    E     L  
Sbjct: 293 NAQFAARLPIVVSGERRYFDVRALRLSGGSAGIAVDASEAAALGAALVRMAEAHRRTLDQ 352

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           L+  +A+FD  R L F+N S+  LW++D AFL +NP +  +++ LR+A KLPE+ +++ W
Sbjct: 353 LSSGVAVFDAQRRLAFYNDSYRRLWDLDRAFLDSNPDDSSVIDRLRAARKLPEERDFREW 412

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           K+ +   Y++ E  K  W+LP+G+ + ++ T N  GG  ++F+++T  ++L+ +Y  L+ 
Sbjct: 413 KKKLHEAYRAVEPEKAIWYLPDGRAISIVTTPNQEGGVTYLFDDVTESLELQRRYGGLID 472

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           VQ ET+D+L+E VAVFG +G  +L NPAF  +W      L+   HI  +   C   ++++
Sbjct: 473 VQRETLDNLTEAVAVFGSNGCAQLFNPAFTRMWNLSPEALNNRPHIETVEEWCRPLFDDA 532

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             W    + IT  DD RK +   LE    +VL    +PLP+  TMLTF++++D+   ERA
Sbjct: 533 VSWQALRSAITGIDD-RKHVLLKLERKDGTVLSCKTMPLPDGATMLTFLDISDTENVERA 591

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+NEAL  AD IK  FV HVSYELRSPLT IIGF  LL     G LN KQS+Y+ YI+
Sbjct: 592 LRERNEALETADRIKVDFVHHVSYELRSPLTTIIGFAHLLGDPSTGPLNDKQSEYIAYIT 651

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+  L+ ++N+ILDLA++DAG M LN   I +   ++   + I  ++  + I + V  D
Sbjct: 652 SSTNALMAIINNILDLASIDAGAMTLNLGPIDIGRAIDAAAEGIQDRLARDQITLDVEID 711

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +G FV D +R++Q+   +L+NA+ FS   +TV L   +     +F+V + G  I  ++
Sbjct: 712 PAVGEFVGDERRVVQVLYNLLANAVGFSPNQATVTLVVHKIGAKVVFTVTDAGPGIAPEL 771

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF+ F S++   + RG GLGL++V SF+ LHGG V + S     T++ C  P
Sbjct: 772 KDKVFDWFESHSQGSRHRGPGLGLALVRSFVELHGGKVQVDSVVGRGTSVICEFP 826


>gi|86747750|ref|YP_484246.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86570778|gb|ABD05335.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 837

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/763 (33%), Positives = 411/763 (53%), Gaps = 16/763 (2%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           +++  ILL+R R   A +     + +  +  +  ++ +LL     + I W   D+ P+I 
Sbjct: 70  SVMSAILLMRTRQRAAAQEARLRAEVQTLQAESDRFRALLFAEPQVLISWSAGDDRPQIS 129

Query: 97  GQLHQRID------IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150
           G +   +        PQ    +L+F  WL     +++  A + L  +G++F L   T   
Sbjct: 130 GDIALLLPNDAHGGQPQR---VLAFGTWLPPEPALQIDHAVDALLDKGEAFLLHLTTSTG 186

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
            AI+  GR  G  A LRI  L G+  ELA+ + + K L +   + +   D+  + +W R 
Sbjct: 187 RAIEAMGRAVGGQAILRIRELSGVRRELADMSRRFKMLQDETDMLRGFADAAPWPIWTRR 246

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
            +G++ +AN +Y +  +        A+G + +L     +  +  + A +  F   +  + 
Sbjct: 247 ASGELNFANAAYARAADAS--SPADAVGRNLELLDSTDRGNLARALAEDSEFAARLPIVV 304

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
            G  + + +  +    G AG+A+D S+   +   L    E     L  L+  +A+FD  R
Sbjct: 305 AGERRYFDVRALRLKGGSAGMAVDSSEAAALGAALVRMAEAHRRTLDQLSSGVAVFDAQR 364

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            L F+N S+ +LW++D  FL ++P +  +L+ LR+A KLPE+ +++ WK  +   Y++ E
Sbjct: 365 RLAFYNDSYRKLWDLDRTFLDSHPDDSSVLDRLRAARKLPEERDFREWKNRLHEAYRAVE 424

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             K  W+LP+G+ + ++ T N  GG  ++F+++T  +DL+ +Y  L+ VQ ET+D+LSE 
Sbjct: 425 ADKAIWYLPDGRAISIVTTPNQEGGVTYLFDDVTESLDLQRRYGGLIDVQRETLDNLSEA 484

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           VAVFG +G  +L NPAF  +W      L+   HI  + A C   Y++   W      IT 
Sbjct: 485 VAVFGSNGCAQLFNPAFTRMWNLSPEALNDRPHIETVEAWCRPLYDDDASWQALRGAITG 544

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            DD RK +   LE    +VL    +PLP+  TMLTF +++D+   ERAL E+NEAL  AD
Sbjct: 545 IDD-RKQVALKLERKDGTVLSCKTMPLPDGATMLTFQDISDTENVERALRERNEALETAD 603

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            IK  FV HVSYELRSPLT IIGF  LL     G LN KQS+Y+ YI++S+  LL ++N+
Sbjct: 604 RIKIDFVHHVSYELRSPLTTIIGFAHLLGDPSTGPLNDKQSEYIAYITSSTNALLAIINN 663

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDLA++DAG M LN   I +   +    + I  ++  + I + + +D  +G FV D +R
Sbjct: 664 ILDLASIDAGAMTLNLGPIEIRRTIAAAAEGIQDRLARDQITLDIDTDPAIGEFVGDERR 723

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+   +L+NA+ FS   +TV L   +   + +F+V + G  I   +   VF+ F S++
Sbjct: 724 VVQVLYNLLANAIGFSPNEATVKLVVRKKGTNVVFTVTDAGPGIAPALKDKVFDLFESDS 783

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + RG GLGL++V SF+ LHGG V + S     T++ C  P
Sbjct: 784 QGSRHRGPGLGLALVRSFVELHGGKVEVDSVVGHGTSVICEFP 826


>gi|39933159|ref|NP_945435.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39652784|emb|CAE25523.1| sensor histidine kinase with multiple PAS domains [Rhodopseudomonas
           palustris CGA009]
          Length = 848

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/763 (33%), Positives = 400/763 (52%), Gaps = 16/763 (2%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           +++  I+L+R R     +     + L  +  +  ++ +LL     + I W   D  P++ 
Sbjct: 81  SVMSAIMLVRTRQRAVAREAGLRADLQGLQAESDRFQALLFAEPQVLISWAAGDSRPQVS 140

Query: 97  GQ------LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150
           G       L  +   PQ    +L+F  WL     +++  A + L  +G+ F L   T N 
Sbjct: 141 GDTALFLPLETQSRQPQR---VLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNG 197

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
            +I+  GR  G  A +RI  L G+  ELA+ T + K L     + +    +  + +W R 
Sbjct: 198 RSIEAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRR 257

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
             G + +AN +Y + T+        AIG + +L     +  +  +      +   +  + 
Sbjct: 258 SDGTLSFANAAYARATDAS--DAADAIGRNLELLDSGDRAALARALGDGYEYSGRLPIVV 315

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
            G  + Y +  +  S G AGIA+D ++   +   L    +     L  L+  +A+FD  R
Sbjct: 316 GGERRYYDVRALKVSGGSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQR 375

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            L F+N S+ +LW++D  FL ++P +  +L+ LR+  KLPE+ ++K WK  +   Y++ E
Sbjct: 376 RLSFYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVE 435

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             KD W+LP+G+ + ++ T NP GG  ++F+++T  +DL+ +Y  L+ VQ ET+D+LSE 
Sbjct: 436 AEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEA 495

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           VAVFG +G  +L NP F  +W      L    HI  I   C   +++   W      IT 
Sbjct: 496 VAVFGSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITG 555

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            DD R  L   +E    SVL    +PLP+  TMLTF ++TD+   ERAL E+NEAL  AD
Sbjct: 556 IDDRRHVLL-KIERKDGSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETAD 614

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            IK  FV HVSYELRSPLT IIGF   L  S  G L  KQ++YV YI+ S+  L+ ++N+
Sbjct: 615 RIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTEKQAEYVNYITTSTNALMAIINN 674

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDLA++DAG M LN   I +   ++   + I  ++  + I +++  D  + SFV D +R
Sbjct: 675 ILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERR 734

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+   +L+NA+DFS    TV L   R      F+V ++G  I     + +F+ F S+ 
Sbjct: 735 VVQVLYNLLANAIDFSPSQGTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDP 794

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + RG GLGLS+V SF+ LHGG V + S+    T++ C  P
Sbjct: 795 QGSRHRGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFP 837


>gi|192288515|ref|YP_001989120.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192282264|gb|ACE98644.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 837

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/763 (33%), Positives = 400/763 (52%), Gaps = 16/763 (2%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           +++  I+L+R R     +     + L  +  +  ++ +LL     + I W   D  P++ 
Sbjct: 70  SVMSAIMLVRTRQRAVAREAGLRADLQGLQAESDRFQALLFAEPQVLISWAAGDSRPQVS 129

Query: 97  GQ------LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150
           G       L  +   PQ    +L+F  WL     +++  A + L  +G+ F L   T N 
Sbjct: 130 GDTALFLPLETQSRQPQR---VLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNG 186

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
            +I+  GR  G  A +RI  L G+  ELA+ T + K L     + +    +  + +W R 
Sbjct: 187 RSIEAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRR 246

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
             G + +AN +Y + T+        AIG + +L     +  +  +      +   +  + 
Sbjct: 247 SDGTLSFANAAYARATDAS--DAADAIGRNLELLDSGDRAALARALGDGYEYSGRLPIVV 304

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
            G  + Y +  +  S G AGIA+D ++   +   L    +     L  L+  +A+FD  R
Sbjct: 305 GGERRYYDVRALKVSGGSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQR 364

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            L F+N S+ +LW++D  FL ++P +  +L+ LR+  KLPE+ ++K WK  +   Y++ E
Sbjct: 365 RLSFYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVE 424

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             KD W+LP+G+ + ++ T NP GG  ++F+++T  +DL+ +Y  L+ VQ ET+D+LSE 
Sbjct: 425 AEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEA 484

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           VAVFG +G  +L NP F  +W      L    HI  I   C   +++   W      IT 
Sbjct: 485 VAVFGSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITG 544

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            DD R  L   +E    SVL    +PLP+  TMLTF ++TD+   ERAL E+NEAL  AD
Sbjct: 545 IDDRRHVLL-KIERKDGSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETAD 603

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            IK  FV HVSYELRSPLT IIGF   L  S  G L  KQ++YV YI+ S+  L+ ++N+
Sbjct: 604 RIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTEKQAEYVNYITTSTNALMAIINN 663

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDLA++DAG M LN   I +   ++   + I  ++  + I +++  D  + SFV D +R
Sbjct: 664 ILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERR 723

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+   +L+NA+DFS    TV L   R      F+V ++G  I     + +F+ F S+ 
Sbjct: 724 VVQVLYNLLANAIDFSPSQGTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDP 783

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + RG GLGLS+V SF+ LHGG V + S+    T++ C  P
Sbjct: 784 QGSRHRGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFP 826


>gi|316931476|ref|YP_004106458.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315599190|gb|ADU41725.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 837

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/760 (33%), Positives = 398/760 (52%), Gaps = 10/760 (1%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           +++  I+L+R R   A +     + L  +  +  ++ +LL     + I W   D  P I 
Sbjct: 70  SVMSAIMLVRTRQRAAAREAGLRADLQGLQAESDRFQALLFAEPQVLISWIAGDSRPRIS 129

Query: 97  GQLHQRIDI-PQTDTD--LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153
           G     +   PQ+     +L+F  WL     +++  A + L  +G+ F L   T N  +I
Sbjct: 130 GDTALFLPAEPQSRQPQRILAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSI 189

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +  GR  G  A +RI  L G+  ELA+ T + K L     + +    +  + +W R   G
Sbjct: 190 EAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRRADG 249

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
            + +AN +Y + T+        AIG + +L     +  +  S      F   +  +  G 
Sbjct: 250 TLSFANAAYARATDAS--DAADAIGRNLELLDTGDRAALARSLGDSAEFTGRLPIVVGGE 307

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQ 329
            + + +  +    G AGIA+D ++   +   L    +     L  L+  +A+FD  R L+
Sbjct: 308 RRYFDVRALKVPGGSAGIAVDATETAALGVALERMADAHRRTLDQLSSGVAVFDAQRRLK 367

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           F+N S+ +LW++D  FL ++P +  +L+ LR+  KLPE+ ++K WK  +   Y++ E  K
Sbjct: 368 FYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVEADK 427

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           D W+LP+G+ + ++ T NP GG  ++F+++T  +DL+ +Y  L+ VQ ET+D+LSE VAV
Sbjct: 428 DVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAV 487

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           FG +G  +L NP F  +W      +    HI  I   C   +++   W      IT  DD
Sbjct: 488 FGSNGCAQLFNPPFVRMWNLSAEAMQSQPHIEAIETWCRPLFDDDVFWQALRGAITGIDD 547

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            R  L   LE    SVL    +PLP+  TMLTF ++TD+   ERAL E+NEAL  AD IK
Sbjct: 548 RRHVLL-KLERKDGSVLACKTMPLPDGATMLTFQDLTDTENVERALRERNEALETADRIK 606

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
             FV HVSYELRSPLT IIGF   L  S  G L  KQ++YV YI+ S+  L+ ++N+ILD
Sbjct: 607 IDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTDKQAEYVNYITTSTNALMAIINNILD 666

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           LA++DAG M LN   I +   ++   + I  ++  + I ++V  D ++  FV D +R++Q
Sbjct: 667 LASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQVDVDPEIDRFVGDERRVVQ 726

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +   +L+NA+DFS    TV L   R      F+V + G  I       +F+ F S+    
Sbjct: 727 VLYNLLANAVDFSPPQGTVRLTVRRGETRVAFTVADAGPGIAPAFKDRMFDLFESDPQGS 786

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + RG GLGLS+V SF+ LHGG V + S+    T++ C  P
Sbjct: 787 RHRGAGLGLSLVRSFVELHGGKVEVESTVGRGTSVTCEFP 826


>gi|182677583|ref|YP_001831729.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633466|gb|ACB94240.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 903

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/510 (42%), Positives = 329/510 (64%), Gaps = 6/510 (1%)

Query: 287 GEAGIAIDVS-----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           G  G+A DVS     + + V     H    L  LT A+AIFD+ + L FHN ++ +LW +
Sbjct: 375 GAVGMASDVSELEAMRSVNVQQAEAHA-RTLDQLTTAVAIFDRTKRLVFHNTAYRQLWAL 433

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           D A+L   P++ E+L+ LR A+ LPEQ+++++WK+++FS Y++ ET +  W+LP+G+TL 
Sbjct: 434 DQAWLDQGPTDAEILDRLRMAHLLPEQVDFRSWKQDLFSAYQALETREQLWYLPDGRTLR 493

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            ++T NP+GG  ++F++ T +  LE+++N  ++VQ ET+D L EGVAVFG DGR+KL NP
Sbjct: 494 SVITPNPQGGVTYLFDDTTERFHLESRFNAAIRVQSETLDTLQEGVAVFGSDGRLKLFNP 553

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           AF +LWK E   L    HI  +A+ C+    E   WD    ++    DER  L+  L   
Sbjct: 554 AFAALWKLEPEALGGEPHIDKVASLCAPLLVEQTAWDNLRTVVAGLLDERLGLENRLTRQ 613

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             SVL+Y+  PLP+  T++TF+++T SV  ERALTE+N+AL  A++++N FV HVSYELR
Sbjct: 614 DGSVLDYAAAPLPDGATLITFIDMTASVNVERALTERNQALLDAEKLRNDFVHHVSYELR 673

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           SPLTNIIGF ++L    +G LN KQ +Y+ Y+ ASS+ L  ++NDILDLA++DA  M L+
Sbjct: 674 SPLTNIIGFIEMLGEGAVGPLNEKQHEYIGYVMASSSALRAIINDILDLASIDADAMDLS 733

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + + + +    + +  ++ E+ + + V +   +G F+AD +R+ QI   +LSNA+ F
Sbjct: 734 LEEVDIAEAMRAAAEGVRDRLRESTLTLAVDAAPDIGVFLADGKRIRQILFNLLSNAIGF 793

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           S+ G TV L A+R + + IF V + G  IP+DM + VF+RF ++A     RGVGLGLSIV
Sbjct: 794 STPGQTVTLAASRSHDEVIFKVIDEGCGIPDDMVEHVFDRFKTHAGGSNHRGVGLGLSIV 853

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            SF+ LHGG V I +     TT+ C  PS+
Sbjct: 854 RSFVQLHGGRVLIETKLGKGTTMTCIFPSR 883



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 82  LTIVWDGKDETPEIIGQLH-------QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
           L I W    E PEI G               P  D+ LL+F++W+       L    + L
Sbjct: 120 LFIAWSAPGEKPEIAGDPGFLTGKNLATGSSPSPDS-LLAFKSWMSLDDARDLQARIDLL 178

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           R++G+SF L +   N   + IEGR  G  A +RI  +     +L +   +  ++   ++ 
Sbjct: 179 REKGESFHL-SLGGNGQHLDIEGRPIGGRAVVRIRDVSAARRDLLQLREEQTQILADLAA 237

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            + L D++    W RD AG + W N++Y +  E 
Sbjct: 238 VRTLLDAVPHPAWQRDGAGHLSWVNLAYVRAIEA 271


>gi|188584128|ref|YP_001927573.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179347626|gb|ACB83038.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 857

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/808 (31%), Positives = 414/808 (51%), Gaps = 37/808 (4%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75
           +  + +  +A    I G++L   I  ++ +R+R    +K       L+++     +   L
Sbjct: 38  LGAMHTHNVAGLAVILGLILFATILSLVYLRERVGWMRKERALQDELTDLRGAHDRAEML 97

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDI----------------------------PQ 107
           L     + + W G+ E P I+G      D+                            P+
Sbjct: 98  LHSERQVLVAWAGRGE-PMIVGDPAFAQDLRNQDLRNPDLRNQELRGYEAWGQDPQGAPR 156

Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR 167
               LL+F  WL       L  A   LR+ G  F +   +     I+ +G+  G  A LR
Sbjct: 157 GSRHLLTFGTWLAAQDAQLLEAAVATLRERGTGFRMNLRSLAGRFIEAQGQAVGGRALLR 216

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +        EL E   + ++    +S    L D+L   VWHRD AG + + N +Y    E
Sbjct: 217 LRETTEERRELIELRHRLEEAKRGLSALAGLLDALPQPVWHRDTAGALAFVNTAYAAAVE 276

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET--VSTLEHGNNKSYKIVRVLNS 285
                 + A+    +L     + ++   +       +   +S +  G  ++  +      
Sbjct: 277 APN--REAALSHGLELLDRSARDQIARQTGRPGLVAQPLRLSAVVAGARRTLDVSESTLE 334

Query: 286 FGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
            G  GIA+DVS+       +  Q+      L  L  A+A+FD  + L FHN ++  LW++
Sbjct: 335 TGRVGIAVDVSELESVRADLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDL 394

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           D AFL   P + E+L+ LR+A KLPEQ ++++WK ++ + Y++ E     W+LP+G+TL 
Sbjct: 395 DPAFLEGRPLDGEILDRLRAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLR 454

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           V+   NP+GG  +++ +++  + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N 
Sbjct: 455 VVADPNPQGGLTYLYHDVSESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANR 514

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           AF + W+ +   L+   H+  + A C     +   W      IT   + R      L++ 
Sbjct: 515 AFAATWRLDPATLAGKPHVDAVIAACRALTPDQSPWAGIRQSITGLSETRSGHACRLDIN 574

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +VL+ S  PLP   T+LTF++VT S   ERALTEKN+AL +A +++++FV HVSYELR
Sbjct: 575 DGTVLDCSSQPLPLGATLLTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELR 634

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           SPLTNIIGFT LL    +G+LN +Q +Y E+I  SS  LL ++NDILDLA++DAG ++L 
Sbjct: 635 SPLTNIIGFTQLLGDETVGALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQ 694

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             TI +   ++   + I  ++ E++IR+ +     +GS  AD +R+ QI   +LSNA+ F
Sbjct: 695 RETIDVRATVDAAVRGIEDRLAESDIRLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGF 754

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           S  G  V ++A R+  +   +V + G  I  ++   VF+RF SN    + RGVGLGLSIV
Sbjct: 755 SEPGQQVRVEARREGAELRLTVIDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIV 814

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
            SF+ LHGG V I S+    T + C  P
Sbjct: 815 RSFVELHGGRVEIHSAPGTGTRVTCLFP 842


>gi|170747176|ref|YP_001753436.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653698|gb|ACB22753.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 862

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 257/782 (32%), Positives = 424/782 (54%), Gaps = 21/782 (2%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
             +A+FG   G++   +I  +L + +R    ++  E  + L  +     +   LL     
Sbjct: 44  AALAIFG---GLVAFAVILSLLHLYERGRWTRRERELAATLDVLRGAHDRAEMLLNAERQ 100

Query: 82  LTIVWDGKDETPEIIGQL----HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137
           + + WD + E P + G +    H           +L+F  WL       +  A E LR  
Sbjct: 101 IIVTWDQRSE-PVVEGDISLAIHGERPTSGYARRVLAFGTWLVPADATAVETAVETLRAR 159

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           G  F L   +Q   +I+  G+     A LR+        E+A+      +    +S    
Sbjct: 160 GTGFALSLRSQTGRSIEAHGQAVAGRALLRLRETSQERCEIADLRAALDETRRGLSALSG 219

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF----KEEIKKRMI 253
           L D++   VW R++ G + W N +Y    E E    + A+    +LF    +E I +   
Sbjct: 220 LLDAIPQPVWRRNRDGGLSWVNAAYVAAVEAES--REAALDAGLELFDRPARETIAREEA 277

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTY 309
           +  A        +S +  GN +   +       G  GIAIDVS+       +  Q+    
Sbjct: 278 ARFAGLTRSVPRLSAIVAGNRRMLDVFETGLETGRVGIAIDVSELESVRADLQRQMNANV 337

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
             L  L  A+A+FD ++ L FHN ++ +LW++D AFL + PS+ E+L+ LR+  KL E  
Sbjct: 338 RTLDQLPTAVAMFDVSQRLIFHNAAYRQLWDLDQAFLDSRPSDGEILDHLRAERKLEEHA 397

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           +++ WK+ + S Y+++E ++  W+LP+G+TL V+   NP+GG  ++F++++ +++ E++Y
Sbjct: 398 DFRGWKQGVLSAYRAAEANQTWWYLPDGRTLRVVADPNPQGGLTYLFDDVSDRLNAESRY 457

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           N L ++Q ET+D L+E VAVFG DGR+ L+N AF ++W+ +   +    H+  + A C  
Sbjct: 458 NALRRLQAETLDTLAEPVAVFGADGRLSLANRAFFTVWRLDPEMVEERPHVDAVIAACRA 517

Query: 490 YYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                + W D+  A++    + R +    LE++  +VL+ +  PLP   T+LT ++VT S
Sbjct: 518 LAPAEEPWLDIRDAVVGL--EARTARTCRLEVVDGTVLDCAAQPLPEGATLLTLIDVTAS 575

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  ERALTEKN+AL KA +++++FV HVSYELRSPLTNIIGFT LL    +G+LN +Q +
Sbjct: 576 VNVERALTEKNDALEKAAQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETVGALNERQRE 635

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y ++I  SS  LL ++NDILDLA++DAG ++L    + +   +    + I  ++ E++I 
Sbjct: 636 YADHIMRSSAALLVIINDILDLASIDAGSLELQREEVDVQATVEAAVRGIEDRLAESHIT 695

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + +     +GS  AD +R+ QI   +LSNA+ FS  G  V ++A R   + + SV+++G 
Sbjct: 696 LALDVPEDIGSVHADGKRVRQILFNLLSNAVGFSDAGQRVEVQARRTAQELLLSVRDHGR 755

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +P ++  SVFNRF S+    + RGVGLGLSIV SF+ LHGG V + ++    T + C  
Sbjct: 756 GMPPEIADSVFNRFESHTLGTRHRGVGLGLSIVRSFVELHGGRVLLETAPGSGTRVTCTF 815

Query: 789 PS 790
           P+
Sbjct: 816 PT 817


>gi|217976854|ref|YP_002361001.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217502230|gb|ACK49639.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 859

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/739 (33%), Positives = 400/739 (54%), Gaps = 20/739 (2%)

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
           +L +   LL  +  + +VW G D+ PE+ G L    + PQ    L +F +WL      +L
Sbjct: 109 RLDRAELLLAASAGIIVVWRGADDQPEVEGDLALLAEDPQRRLPL-AFGSWLVAASAQEL 167

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
                 LR  G +F     T +   + +EGR     A +RI  +     E         +
Sbjct: 168 GVRVADLRARGAAFRAAVATLDGRHLDVEGRPLDGVAVMRIRDVSAERMEAIRLQELEAR 227

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
               +     + D+     W RD  G +   N +Y +  E       +A+  + +L ++ 
Sbjct: 228 AKGELKALWAMLDASPNPAWLRDGEGRLTLVNSAYARAVEAADP--DEAVARNVELLEKP 285

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-----------GIAIDVS 296
            ++    + A    +      +  G  + + ++   +  GEA           G+A DV+
Sbjct: 286 AREASREARATGAVWRGRAPAVVVGERRLFDVIDAPS--GEAVAAGSAAPASVGMASDVT 343

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +     D L    +     L  L+ A+ IFD ++ L FHN ++ +LW +D A+L   P++
Sbjct: 344 ELQGARDALEREKQAHARTLDQLSTAVVIFDHSKRLVFHNAAYRQLWGLDQAWLDEKPTD 403

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            E+L+ LR+A  +PEQ +++ WKE + + Y+S ET +  W+LP+ +TL +++  NP+GG 
Sbjct: 404 SEILDRLRAARLIPEQTDFRVWKEGLLAAYQSIETEEQAWYLPDERTLRIVINPNPQGGV 463

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            ++++++T +  LE+++N  ++VQ ET+D L EGVAVFG DGR+KL NPAF  LW  + +
Sbjct: 464 TYLYDDVTERFRLESQFNAAIRVQSETLDTLKEGVAVFGSDGRLKLFNPAFAELWSLDPD 523

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L    HI  +A  C+  + +   W+   A++    D+R   +  L     +VL+ +  P
Sbjct: 524 QLGDQPHIDRVAELCAPLFMQEGDWNELRAVVAGLQDQRLGYENRLARRDGAVLDCAAAP 583

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LP+  T++TF++ T  V  ERALTE+N+AL +A+ ++N FV HVSYELRSPLTNIIGF  
Sbjct: 584 LPDGATLITFIDATAGVNVERALTERNQALIEAERLRNDFVHHVSYELRSPLTNIIGFIQ 643

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL    +G LN +Q +Y  Y++ SS+ LL ++NDILDLA++DA  M+L+   I + + + 
Sbjct: 644 LLGDPSVGPLNPRQLEYAGYVTKSSSALLAIINDILDLASIDADAMELSLEEIDVAETMR 703

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              + +  ++ E  + + VI    LG F+AD +R+ QI   +LSNA+ FS+ GS + L A
Sbjct: 704 AAAEGLEDRVAEAGLTLSVIPMQDLGFFIADGKRIRQILMNLLSNAIGFSAPGSAIGLAA 763

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            R   + +F V + G  IP ++   +F+RF ++    + RGVGLGLSI  SF+ LHGG +
Sbjct: 764 LRRGEEIVFKVSDQGRGIPREVVDHIFDRFKTHTSGSRHRGVGLGLSIARSFVELHGGRI 823

Query: 773 SISSSDEGVTTINCRIPSK 791
            I S+    TT+ C  P+K
Sbjct: 824 LIDSALGEGTTVTCIFPAK 842


>gi|300023813|ref|YP_003756424.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525634|gb|ADJ24103.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 836

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/693 (34%), Positives = 394/693 (56%), Gaps = 14/693 (2%)

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA 164
           +P+   ++L F  WL+      L  A +KL   G+SF ++ +T     I+ EGR +G  A
Sbjct: 129 LPEHHAEILRFGQWLESTSAHSLKAALDKLFVNGRSFSIILKTIAGGIIEAEGRAAGGRA 188

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            LR+  + G   E+A    +   L+  I   + L ++L   VW R     ++W N +Y +
Sbjct: 189 VLRLKEVSGYKLEIARIEDQHATLARDIRSSRALLNTLPMPVWLRGVDNRLIWVNAAYVQ 248

Query: 225 ----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
                +E E +  Q  + E R+      +K +  + A  + +   +  +  G  K++++V
Sbjct: 249 AVDAKSEIEVLEHQIELLEGRQ------RKSVSRALAAGQTYRSRIHLVSGGERKAHEVV 302

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQL---THTYE-ILHNLTVAIAIFDQNRYLQFHNRSFV 336
            +      AG A+DV+   +   +L   +  Y+  L  +  A+AIF  +  L F+N +F 
Sbjct: 303 VLPVDGMTAGAAVDVTDIESAQGELERQSSAYDRTLDRVETAVAIFSPDHKLAFYNAAFA 362

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           +LW +D  +LA+NPS++ +L+ LR    L   +N + WK  + + Y++     DTW+L +
Sbjct: 363 KLWSLDTDWLASNPSDNVILDRLREIGVLEPVVNHRDWKAQVLACYQTGTPFDDTWNLTD 422

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G+ LHV+    P GG  ++F + T ++ LE++YN L+ VQ ET++ L EGVAVFG +GR+
Sbjct: 423 GRILHVMAEQRPDGGVTFLFADETERLSLESRYNALIDVQRETLNSLKEGVAVFGTNGRL 482

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           KL N AF ++W  ++ RL+   H+  + A     +  +D W      +T+F DER++  G
Sbjct: 483 KLFNKAFCNIWHMQQKRLAELPHVGEVIAAAQTLHPNNDTWRRIGHAVTAFLDERETFSG 542

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +      V++Y+++PLP+  T++TF +VTD+ RAERAL E+NEAL  AD +K +F+ H+
Sbjct: 543 QMTRDDGVVVDYALMPLPDGATLMTFADVTDAKRAERALVERNEALVAADRLKTNFIGHI 602

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           SYELR+PL +IIGF+++L +   G LN+KQ +Y+  I +SS  LL ++NDILDLAT+DAG
Sbjct: 603 SYELRTPLNSIIGFSEMLASPLFGDLNAKQREYLADIMSSSKTLLAIINDILDLATIDAG 662

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+L  + + +  L++     I  +   N + I++    ++  FVAD  R+ Q+   +LS
Sbjct: 663 AMQLKPTPVGVRALIDAAILGIRERAVRNRLTIEIAVADEVNEFVADEARMRQVLYNLLS 722

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA+ FS    TV L    +NG  IF V+++G  IP+D    +F+RF S +H    RG GL
Sbjct: 723 NAVGFSKVNGTVRLACWSENGTIIFRVEDDGVGIPKDRIGRIFDRFESQSHGSDHRGAGL 782

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSIV+S + LHGG + + S +   T +  R+P
Sbjct: 783 GLSIVKSLVELHGGTIEVFSEENRGTRVTVRLP 815


>gi|154250574|ref|YP_001411398.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154154524|gb|ABS61741.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 861

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/704 (33%), Positives = 400/704 (56%), Gaps = 8/704 (1%)

Query: 93  PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152
           P I+G     +D    D D       L+  +  +L+ A ++LR  G  F L  ++ +   
Sbjct: 141 PRIVGSTATLVDPSSGDLDFSYLLTRLEPENAGRLNTAVQRLRTRGARFSLHVQSTDGRT 200

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
            + EGR +G+ A L +  + G  +E++    + ++     + F+    S  F  W R   
Sbjct: 201 FEAEGRPAGALAVLWLRDVTGERAEVSRLKERLRQAEFARARFEEHIGSAPFPAWRRGDD 260

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-TLEH 271
           G ++W N +Y +  +      + A+    +L  EE    +      +++     S  +  
Sbjct: 261 GALVWVNAAYARAVDAASP--EDAVTRGLELLNEETLSSL-RRGLFDRSRARARSHAIMA 317

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRY 327
           G  ++  IV      G +GIAIDVS       +L    E     L  +T A+AI   ++ 
Sbjct: 318 GERRALDIVEQRLGDGVSGIAIDVSDLDAAEAELRRHIESHAATLDRVTTAVAICGPDKR 377

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           L F NR+F  LW +D  +L   PS+ E+L+ LR+  +LPEQ N++ WK+    +Y+S++ 
Sbjct: 378 LTFRNRAFETLWGLDPHWLDGGPSDGEILDELRARRRLPEQANFQAWKQTRMEIYRSTDP 437

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
             + WHLP+G+T+ ++  ++P GG I+++EN+T +++LE+ YNTL +VQ ETIDHL EGV
Sbjct: 438 VDEYWHLPDGRTIKLLAQAHPFGGVIYLYENVTERLNLESSYNTLARVQRETIDHLYEGV 497

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           AVFG DGR+KL NPA+ ++W   + +LS   H+  +   C     +   WD     +T+ 
Sbjct: 498 AVFGSDGRLKLYNPAYANIWNLADEQLSGEPHVNELVEMCRPLLADEAEWDTLKNGVTNM 557

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
              R  + G L+    +V++Y+ +PLP+  T++T+V+VTDS R E+AL ++N+AL  AD 
Sbjct: 558 SGIRTQITGRLDRPDGTVVDYAQVPLPDGATLMTYVDVTDSTRMEQALRDRNDALETADR 617

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ HVSY+LR+PLTNI+GF ++L+T   G L+ +Q +Y++ I  SS  L+++VNDI
Sbjct: 618 LKSEFISHVSYQLRTPLTNILGFGEILETEMFGPLSPRQHEYMQGILESSETLIDVVNDI 677

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDLA ++AG M L+ S + L++++   ++       +N + ++V     +G   AD +R+
Sbjct: 678 LDLAVIEAGAMTLDLSDVELSEVIYATEEFAQRPAQKNKVTLRVECPKDIGIVRADEKRI 737

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +LSN++ F+S G T+++ AAR +      V++ G  I  +   +VF+RF +++ 
Sbjct: 738 KQIMINLLSNSLAFTSPGDTIVIGAARRDNSVELYVEDTGDGIKPEFQSNVFDRFEAHSS 797

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +RRG GLGLS+V SF+ LHGG V++ S+ +  T + C +P +
Sbjct: 798 SDRRRGAGLGLSLVRSFVELHGGWVTLESAPDVGTRVTCHLPVR 841


>gi|114704750|ref|ZP_01437658.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539535|gb|EAU42655.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 822

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/785 (32%), Positives = 423/785 (53%), Gaps = 17/785 (2%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           S  I     IA  L T ++  + L++ R +L  +  +  + L +   + +++ +LL  ++
Sbjct: 10  SAPITALALIAVALGTMMVCAVYLMKYRAALTHENEQLRAELVDRSQEANEFRALLGASD 69

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
              +V+    E P + G+L +    P++    L F  WL       L+ A E LR    S
Sbjct: 70  QRLLVYR-DSEIPRVFGELPKEAGSPRSPQRFLEFSGWLPIEVAGDLAAAIENLRNNAVS 128

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           F +  +T+++  I++ GR  G  A +R     G+ ++L     +  +    I   + L D
Sbjct: 129 FAISLDTRSNELIEVTGRTHGGLALVRFTHTAGLRAKLKRAGSELTEALGTIDTMQALLD 188

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           +     W RD+ G + W N ++ K    +G    + +    +   E  ++ + S+ +   
Sbjct: 189 TAPLPAWLRDREGKLYWVNQAFSK--AVDGGSPDETVENGTEFLAENDRREVASAVSQYG 246

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLT 316
            +   +ST+   +   + +  +    G AG+AIDVS+   +  +L  T     E L  L 
Sbjct: 247 LYAGKLSTVVDADRHIFDVTELAGQLGTAGLAIDVSETENIRRELRQTIDSQSETLDKLG 306

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-- 374
            A+A FD    L ++N +F  L+E+   FL ++P +   L+ LR A  LP +  + +   
Sbjct: 307 TAVARFDPETRLVYYNAAFKNLFELTDTFLQSDPDHVAFLDHLRHAGVLPTETAFPSQRR 366

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           KE++ + Y +++  +  WHL +G+TL V+ T +P+GG  ++FE++T ++ LE +  T+ +
Sbjct: 367 KEDL-AAYSATDPTETMWHLSSGRTLRVVATPHPQGGATFVFEDITERLKLEMEIKTVAR 425

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +Q ET+D+L EGVAVFG DGR++LSNP F  +++ +   L     I+    T      + 
Sbjct: 426 LQRETLDYLGEGVAVFGGDGRLQLSNPIFGEMFEFDAAFLKSKPRIQTFEDTAGVRIEDG 485

Query: 495 D----GWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                GW   + ++TS D+  R S  G + L +   L Y  +PLP AQTMLTF +V+D+ 
Sbjct: 486 TFDGTGWKGLSVLVTSIDENGRNSENGEVRLSNGMTLAYKAVPLPAAQTMLTFSDVSDAR 545

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            AER L EKN+AL +A+ IK  FV  +SYELRSPLT +IGF+ LL   +LG+LN +QS Y
Sbjct: 546 AAERMLREKNDALEEANRIKYDFVSFMSYELRSPLTTVIGFSQLLAEPELGTLNERQSDY 605

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +++I++S+  LL +VND LDLAT+DAGIM+L  S + +   +    + +  ++HEN +R+
Sbjct: 606 LDHITSSTRSLLAMVNDTLDLATIDAGIMELEVSHVDIAARVENAVEGVQERLHENQLRV 665

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNG 727
           +V          AD  RL QI   +LSNA +F+ +GS + LKA  +    +  F+V + G
Sbjct: 666 EVDLTKSGDVLEADGARLTQILYNLLSNATNFAPQGSEIELKAWKSETGSEVCFAVTDRG 725

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IP D    +F RF +NA  G+  G GLGLSIV+S + LHGG + + + + G T + C 
Sbjct: 726 PGIPADQVDRIFERFETNAEGGRSSGPGLGLSIVKSLVELHGGEIRVETPNGGGTRVICA 785

Query: 788 IPSKE 792
           +P+ +
Sbjct: 786 LPASQ 790


>gi|323138125|ref|ZP_08073198.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322396587|gb|EFX99115.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 842

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/781 (32%), Positives = 403/781 (51%), Gaps = 17/781 (2%)

Query: 20  FSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTEN 79
           F  ++  F    G+ L + +  +  I +R    ++       L E   +L +  + L   
Sbjct: 54  FDSEVVSFAFSGGLALFSAVVALTHISERKRWQRREAALVEELEETRARLDRAKTFLASE 113

Query: 80  NCLTIVWDGKDETPEIIGQ---LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK 136
             + I W G D  P+I      L + +    +   +L F  WL       L  A E LR+
Sbjct: 114 AQILIAWAGPDSEPDINASSMLLAESV----SPRRILGFGAWLAPKDAQDLEAAVESLRR 169

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
           +G+ F +            EGR  G  A LRI  + G   EL     +     N ++  +
Sbjct: 170 KGEGFRMPLAGLAGRHFDAEGRAVGGSAVLRIREVSGDRLELIGLRERHAAAQNELAGLR 229

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            L ++    VW RD  G + + N +Y    E      + A+    +L ++    R  ++ 
Sbjct: 230 TLLEATPAPVWIRDAEGRLSFVNSAYAAAVEA--AEPRDAVARGLELLEQ--PARAAAAQ 285

Query: 257 ALEKN--FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV----NDQLTHTYE 310
           +LEK   +   V  +  G      + +       A IAID  +  TV      Q+     
Sbjct: 286 SLEKGAVWRARVPAVVAGERHLLDVTQTATPEMAASIAIDRHEVETVRADLQQQMQSHVR 345

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            L  L  A+AIFD+ R L +HN ++ +LW+ID  FL   P++ E+L+ LR+  ++P + +
Sbjct: 346 TLDQLPTAVAIFDRGRRLIYHNDAYAKLWQIDAPFLEQKPTDGEILDRLRAEQRVPVESD 405

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           +K WKE +F  Y+S E  + TWHLP+G+ + V+   N +GG  +++++ T   DLET++N
Sbjct: 406 YKAWKERLFEAYRSPEPIRHTWHLPDGRIIDVVAHPNTQGGVTYLYDDTTKAYDLETRFN 465

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            L + Q ET++ L EGVAVFG DGR+   NPAF  LW+ +  +L        I A C + 
Sbjct: 466 ALNRTQSETLETLREGVAVFGADGRLNFCNPAFAQLWRLDVEQLDKKPRFDAIVAQCRKL 525

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           ++ ++ W      +T   + R+     +E     VL+ +   L +   +LTFV+VT  V 
Sbjct: 526 HDNAETWAELQCFVTGLAEMREGFTRRIERSDGVVLDCTAQSLLDGAALLTFVDVTADVN 585

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ERALT++N+AL  A++++N F+ HVSYELRSPL NI GF  LL     G LN +Q +Y+
Sbjct: 586 VERALTDRNKALLAAEKLRNDFIHHVSYELRSPLNNINGFVHLLGEESTGPLNPRQLEYL 645

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            Y+S SS  LL +++DILDLAT+D   ++L +S +     +    + +  ++ EN+I ++
Sbjct: 646 GYVSKSSAALLAIIDDILDLATIDQDALELEFSDVDAEATMRAAIEGVQDRLAENSIDVQ 705

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +++   +G+F  D +R+ QI   +LSNA+ FS  G TV L A R   + +F V + G  I
Sbjct: 706 IVAMDDVGTFRGDAKRVRQILFNLLSNAIGFSRPGQTVTLAAMRRGDEVVFKVTDRGRGI 765

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           P ++ + VF+RF S+    + RGVGLGLSIV +F+ LHGG V I S+    TT+ C  P+
Sbjct: 766 PPEVLERVFDRFESHTAGSRHRGVGLGLSIVRAFMELHGGKVFIDSAPGEGTTVTCVFPA 825

Query: 791 K 791
           +
Sbjct: 826 Q 826


>gi|296446569|ref|ZP_06888511.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255923|gb|EFH03008.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 848

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/731 (32%), Positives = 381/731 (52%), Gaps = 12/731 (1%)

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
           +L +  + L     L + WDG    P++   L       +     L+F  WL      +L
Sbjct: 105 KLDRAETFLASEPQLLVSWDGAASEPDVENSLGDAAFARRP----LAFGTWLTMKDAREL 160

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +    LR+ G+ F L   +      + EGR     A LRI  + G   EL     +  +
Sbjct: 161 EERIGWLRQSGEGFRLAVASPQGRRFEAEGRAVAGRAVLRIREVSGDRLELLSLRERHAR 220

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
                     + ++L   VW R   G + + N +Y    E E      A+    +L   +
Sbjct: 221 CVAEAEGLHAMLEALPTPVWMRSADGRLSFVNAAYAAAVEAESPA--DALRRQIELIDHQ 278

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV----SKEITVND 303
            +     +   ++ F   V+ +  G      +V        A +A+D     +    +  
Sbjct: 279 ARAEATVARTRDEVFRARVTAVVAGERHGLDVVEAPFHGASAALALDRHEIDAMRSDLEQ 338

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSA 362
           Q+      +  L +A+AIFD+ + L + N ++  LW  +D AFL   PS+ ++L+ LR+ 
Sbjct: 339 QMQAHARTMDQLPIAVAIFDRRKRLVYRNAAYERLWPPLDRAFLDQGPSDSQILDRLRAE 398

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
            +LP + ++K WK  +   Y+SSE H +  WH+P+G+TL V+V  NP+GG  +++++++ 
Sbjct: 399 QRLPVETDYKAWKSRLLEAYRSSEEHHEHIWHMPDGRTLRVVVNVNPQGGVTYLYDDVSE 458

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +  LET+++ L ++Q ET+++L EGVAVFG DGR++  NPAF +LW+ +++ L       
Sbjct: 459 RYFLETRFHALDRMQNETLENLREGVAVFGADGRLRFCNPAFVALWRLDKHALDEKPRFD 518

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +A  C++ +   D W      +T   + RK     +     SVL+ +   LP    +LT
Sbjct: 519 AVAGLCAKLHANEDTWSELRGFVTGLQEMRKGFTRRIARSDGSVLDCTAQTLPEGAALLT 578

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           FV+VT  V  ERALTE+NEAL  A++I+N FV HVSYELRSPL NIIGF+ LL     G 
Sbjct: 579 FVDVTAGVNVERALTERNEALIAAEKIRNDFVHHVSYELRSPLNNIIGFSHLLGEKSTGE 638

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN+KQ +Y+ Y+  SS  LL ++NDILDLAT+D+  M L    + + D +    + +  +
Sbjct: 639 LNAKQLEYLSYVGKSSAALLAIINDILDLATIDSDAMALELGDVDVEDAMRAAAEGVQDR 698

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + EN I +K+++ G +G F  D +R+ QI   +LSNA+ FS  G T+ L A R  G+ + 
Sbjct: 699 LAENTIELKIVATGDVGCFRGDAKRIRQILFNLLSNAIGFSRPGQTITLAALRREGEIVL 758

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V + G  I  +  + VF+RF S+    + RGVGLGLSIV +F  LHGG V I S+    
Sbjct: 759 KVADRGRGIAPEALEKVFDRFESHTAGSRHRGVGLGLSIVRAFTELHGGRVLIDSALGEG 818

Query: 782 TTINCRIPSKE 792
           TT+ C  P+ E
Sbjct: 819 TTVTCIFPTDE 829


>gi|218532773|ref|YP_002423589.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218525076|gb|ACK85661.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 842

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/785 (32%), Positives = 409/785 (52%), Gaps = 22/785 (2%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A    + G++L   I  ++ +R+R    +K       L+++     +   LL     + 
Sbjct: 46  VAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAQLRGAHDRAEMLLHSERQVL 105

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTD-------------TDLLSFENWLKFHHYIKLSKA 130
           + W G+ E P I+G      D+   D               LL+F  WL       L  A
Sbjct: 106 VAWAGRGE-PSIVGDAGFAQDLRNQDLRGQDSRGLQGGSRHLLAFGTWLAPQDAQLLDSA 164

Query: 131 TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190
              LR+ G  F +   +     I+ +G+  G  A LR+        EL E     ++ + 
Sbjct: 165 VATLRERGTGFRMNLRSLAGRYIEAQGQAVGGRALLRLRETTDERRELIELRHTLEEANR 224

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
            +S    L D+L   +WHR   G + + N +Y    E      + A+    +L     ++
Sbjct: 225 GLSALAGLLDALPQPIWHRSPDGALAFVNAAYAAAVEAPS--REAALSHGLELLDRSARE 282

Query: 251 RMISSSALEKNFCETV--STLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQ 304
           +++  +       + +  S +  G  ++  +       G  GIA+DVS+       +  Q
Sbjct: 283 QIVRQARRPGLPAQALRLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRADLQRQ 342

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           +      L  L  A+A+FD  + L FHN ++  LW++D AFL   P + E+L+ LR+A K
Sbjct: 343 MDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPLDGEILDRLRAARK 402

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
           LPEQ ++++WK ++ + Y++ E     W+LP+G+TL V+   NP+GG  +++ +++  + 
Sbjct: 403 LPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDVSESMK 462

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N AF + W+ +   L+   H+  + 
Sbjct: 463 LASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHVDAVI 522

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           A C     +   W      +T   + R      L++   +VL+ S  PLP   T+LTF++
Sbjct: 523 AACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATLLTFID 582

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VT S   ERALTEKN+AL +A +++++FV HVSYELRSPLTNIIGFT LL    +G+LN 
Sbjct: 583 VTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETVGALNE 642

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +Y E+I  SS  LL ++NDILDLA++DAG ++L   TI +   +    + I  ++ E
Sbjct: 643 RQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVRGIEDRLAE 702

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           ++I + +     +GS  AD +R+ QI   +LSNA+ FS+ G  V ++A R+  +   +V 
Sbjct: 703 SDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVEARREGRELRLTVT 762

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  I  ++   VF+RF SN    + RGVGLGLSIV SF+ LHGG V I S+    T +
Sbjct: 763 DRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPGTGTRV 822

Query: 785 NCRIP 789
            C  P
Sbjct: 823 TCLFP 827


>gi|163853828|ref|YP_001641871.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163665433|gb|ABY32800.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 846

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/790 (31%), Positives = 407/790 (51%), Gaps = 27/790 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A    + G++L   I  ++ +R+R    +K       L+ +     +   LL     + 
Sbjct: 46  VAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAHLRGAHDRAEMLLHSERQVL 105

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTD------------------TDLLSFENWLKFHHYI 125
           + W G+ E P I+G      D+   D                    LL+F  WL      
Sbjct: 106 VAWAGRGE-PSIVGDAGFAQDLRNQDLRNQDLRGQDSRGLQGGSRHLLAFGTWLAPQDAQ 164

Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
            L  A   LR+ G  F +   +     I+ +G+  G  A LR+        EL E     
Sbjct: 165 LLDSAVATLRERGTGFRMNLRSLAGRYIEAQGQAVGGRALLRLRETTDERRELIELRHTL 224

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           ++    +S    L D+L   +WHR   G + + N +Y    E      + A+    +L  
Sbjct: 225 EEAKRGLSALASLLDALPQPIWHRSPDGALAFVNAAYAAAVEAPS--REAALSHGLELLD 282

Query: 246 EEIKKRMISSSALEKNFCETV--STLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EI 299
              +++++  +       + +  S +  G  ++  +       G  GIA+DVS+      
Sbjct: 283 RSAREQIVRQARRPGLPAQALRLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRA 342

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +  Q+      L  L  A+A+FD  + L FHN ++  LW++D AFL   P + E+L+ L
Sbjct: 343 DLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPLDGEILDRL 402

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R+A KLPEQ ++++WK ++ + Y++ E     W+LP+G+TL V+   NP+GG  +++ ++
Sbjct: 403 RAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDV 462

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +  + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N AF + W+ +   L+   H
Sbjct: 463 SESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPH 522

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  + A C     +   W      +T   + R      L++   +VL+ S  PLP   T+
Sbjct: 523 VDAVIAACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATL 582

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LTF++VT S   ERALTEKN+AL +A +++++FV HVSYELRSPLTNIIGFT LL    +
Sbjct: 583 LTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETV 642

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G+LN +Q +Y E+I  SS  LL ++NDILDLA++DAG ++L   TI +   +    + I 
Sbjct: 643 GALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVRGIE 702

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++ E++I + +     +GS  AD +R+ QI   +LSNA+ FS+ G  V ++A R+  + 
Sbjct: 703 DRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVEARREGREL 762

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             +V + G  I  ++   VF+RF SN    + RGVGLGLSIV SF+ LHGG V I S+  
Sbjct: 763 RLTVTDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPG 822

Query: 780 GVTTINCRIP 789
             T + C  P
Sbjct: 823 TGTRVTCLFP 832


>gi|240141281|ref|YP_002965761.1| putative histidine kinase, putative HK, ATPase and Sensor Domain
           [Methylobacterium extorquens AM1]
 gi|254563790|ref|YP_003070885.1| histidine kinase [Methylobacterium extorquens DM4]
 gi|240011258|gb|ACS42484.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain
           [Methylobacterium extorquens AM1]
 gi|254271068|emb|CAX27075.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain
           [Methylobacterium extorquens DM4]
          Length = 847

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/790 (31%), Positives = 407/790 (51%), Gaps = 27/790 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A    + G++L   I  ++ +R+R    +K       L+ +     +   LL     + 
Sbjct: 46  VAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAHLRGAHDRAEMLLHSERQVL 105

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTD------------------TDLLSFENWLKFHHYI 125
           + W G+ E P I+G      D+   D                    LL+F  WL      
Sbjct: 106 VAWAGRGE-PSIVGDAGFAQDLRNQDLRNQDLRGQDSRGLQGGSRHLLAFGTWLAPQDAQ 164

Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
            L  A   LR+ G  F +   +     I+ +G+  G  A LR+        EL E     
Sbjct: 165 LLDSAVATLRERGTGFRMNLRSLAGRYIEAQGQAVGGRALLRLRETTDERRELIELRHTL 224

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           ++    +S    L D+L   +WHR   G + + N +Y    E      + A+    +L  
Sbjct: 225 EEAKRGLSALAGLLDALPQPIWHRSPDGALAFVNAAYAAAVEAPS--REAALSHGLELLD 282

Query: 246 EEIKKRMISSSALEKNFCETV--STLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EI 299
              +++++  +       + +  S +  G  ++  +       G  GIA+DVS+      
Sbjct: 283 RSAREQIVRQARRPGLPAQALRLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRA 342

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +  Q+      L  L  A+A+FD  + L FHN ++  LW++D AFL   P + E+L+ L
Sbjct: 343 DLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPLDGEILDRL 402

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R+A KLPEQ ++++WK ++ + Y++ E     W+LP+G+TL V+   NP+GG  +++ ++
Sbjct: 403 RAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDV 462

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +  + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N AF + W+ +   L+   H
Sbjct: 463 SESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPH 522

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  + A C     +   W      +T   + R      L++   +VL+ S  PLP   T+
Sbjct: 523 VDAVIAACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATL 582

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LTF++VT S   ERALTEKN+AL +A +++++FV HVSYELRSPLTNIIGFT LL    +
Sbjct: 583 LTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETV 642

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G+LN +Q +Y E+I  SS  LL ++NDILDLA++DAG ++L   TI +   +    + I 
Sbjct: 643 GALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVRGIE 702

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++ E++I + +     +GS  AD +R+ QI   +LSNA+ FS+ G  V ++A R+  + 
Sbjct: 703 DRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVEARREGREL 762

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             +V + G  I  ++   VF+RF SN    + RGVGLGLSIV SF+ LHGG V I S+  
Sbjct: 763 RLTVTDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPG 822

Query: 780 GVTTINCRIP 789
             T + C  P
Sbjct: 823 TGTRVTCLFP 832


>gi|312114352|ref|YP_004011948.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219481|gb|ADP70849.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 875

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/691 (33%), Positives = 376/691 (54%), Gaps = 6/691 (0%)

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGS 162
           I +P     LL F +WL        ++   +L+  G+ F   A T     I+I G VSG+
Sbjct: 163 IGVPSKLAQLLRFGSWLHPDDASLTAENLARLQSRGEGFVSNASTLEGHVIEIAGAVSGA 222

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
              LRI +   +  EL       K+L   I   + + D+L   VW RD  G + W N +Y
Sbjct: 223 DTVLRIRAFSPVNKELVRLIGDNKRLKQAIQDREGILDALQTPVWLRDAKGALTWVNTAY 282

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
              T  +    ++AI +  +LF+   +  +   S   K     + T+ +G  ++Y+ +  
Sbjct: 283 V--TAIDAKSREEAIDKQIELFETRQRTDLHRMSQSRKPGRIKLQTIVNGCVQTYEAITA 340

Query: 283 LNSFGEAGIAIDVSKEITVND----QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
               G  G A+DVS   T  D    Q+      L  ++  +A+F  +R L + N +F ++
Sbjct: 341 PIERGSGGAALDVSMLKTQRDELERQIAANARTLDKVSTGVAVFGVDRSLFYCNDAFAKI 400

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           WE+++A+LA  P+  E  + LR    LPEQ +++ W++     +  + T  + WHLP+G+
Sbjct: 401 WELEIAWLAAKPAASEFFDQLRQRRLLPEQPDYRKWRDGKIIAFDRNRTLDEFWHLPDGR 460

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           T+HV+      GG  ++F+++T ++ LE +++TL++ Q ET+DHL+EG+AVFG DGR+ L
Sbjct: 461 TVHVVKDCRDDGGLTFLFDDVTEKLALERQFHTLIEGQRETLDHLNEGIAVFGADGRLDL 520

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NP+++S+W   E+ L    H  +I         + D W      IT   + R +  GT+
Sbjct: 521 YNPSYQSIWALPEDMLGDQPHFEDIRKASDMLAPDPDFWHTLRESITGMPEARDTFSGTV 580

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                + L Y + PLP+  T++TF +VTD  R E  L E+NEAL  +D +K +F+ HVSY
Sbjct: 581 AKSDGAHLAYVVTPLPDGGTLVTFADVTDRKRFEEVLLERNEALEASDRLKTAFLSHVSY 640

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT IIGFTD+L     G+LN+KQ +Y+++I  SS +LLN++NDI+DLA +DAG +
Sbjct: 641 ELRTPLTTIIGFTDMLAEPAFGALNNKQREYLDHIKTSSEVLLNIINDIIDLAALDAGAL 700

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L  + + +  L+   +  +  ++   N+ + V      G+ +AD  RL+Q+   +LSNA
Sbjct: 701 DLKLAPVEIESLIEAAELGVRERLSRANVNLDVHIASGAGTVMADANRLIQVLYNLLSNA 760

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + FS +  T+ L   R+      SV++ G  IPE+   +VF+RF S +   + RG GLGL
Sbjct: 761 IGFSPEDGTITLACRREKNGVAISVQDTGLGIPEEEQATVFDRFESRSKGSRHRGAGLGL 820

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++V+S + LH G + + S+    TT+   +P
Sbjct: 821 TLVKSIVELHKGRIDLRSTPGAGTTVTVFLP 851


>gi|154247224|ref|YP_001418182.1| histidine kinase [Xanthobacter autotrophicus Py2]
 gi|154161309|gb|ABS68525.1| histidine kinase [Xanthobacter autotrophicus Py2]
          Length = 837

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 321/539 (59%), Gaps = 9/539 (1%)

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHN 314
           + +F + V  +  G  +  ++V V   FG AGIAIDV+ E     ++          L  
Sbjct: 289 DGHFRQRVKAVTKGQRRQMEVVEVAGIFGTAGIAIDVTSEEDARAEMKQAVVAHRRTLDQ 348

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           LT A+AIF  +  L FHN ++  L+++  AFL  +P   E+LE LR+  K+PEQ +++ W
Sbjct: 349 LTTAVAIFGADERLVFHNAAYERLFDLSPAFLDQHPPEGEILEDLRTRRKVPEQADFRGW 408

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           +  +   Y++ E   D WHLP GQ L V+VT N  GG  ++F++L+  + LE++YNTL++
Sbjct: 409 RAQLREAYRAIEPVNDWWHLPGGQMLRVVVTPNAEGGVTYLFDDLSEHMALESRYNTLIR 468

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +QGET+D L+E VAVFG DGR+ L N AF  LW  E   L    H+  +AA C   + E+
Sbjct: 469 IQGETLDGLAEAVAVFGSDGRLNLYNHAFLGLWSLEARALGERPHVDAVAALCRPLHGET 528

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             +      +T+    R+++   +E     VL+ +  PLP+  TM+TF +VTDSV+ ERA
Sbjct: 529 SAFARIRHAVTTIG-PREAVTLRIERPDGRVLDGATQPLPDGGTMVTFRDVTDSVKVERA 587

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+ EAL  AD++KN+FV HVSY LR+PL  ++G+ D+L+    G LN++Q  Y+E++ 
Sbjct: 588 LIERAEALEAADKLKNAFVGHVSYHLRTPLNTLLGYADMLRDGLAGPLNTRQQDYLEHMR 647

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  L  L++DILDLA++DAG M+L+ S + + + +  V +++   + E  + + V   
Sbjct: 648 QSSDQLRALIDDILDLASIDAGAMELDLSDVDVGETVLGVAEAVRDPVAEAGLNLAVSVG 707

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              G FVAD +R+ QI   +LSNA+  S  G TV L A R +G  +F+V++ G  +P ++
Sbjct: 708 PDAGHFVADGRRVRQILFNLLSNAIAVSPAGGTVSLGAVRRDGALVFTVRDEGPGVPAEV 767

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV----TTINCRIP 789
             ++F RF S +   + RGVGLGL+IV SF+ LHGG V+++ +  G     T   C  P
Sbjct: 768 ADTLFERFESRSAGPRHRGVGLGLAIVRSFMTLHGGSVTVAPAGRGPDAKGTLATCIFP 826


>gi|158422334|ref|YP_001523626.1| ATP-binding ATPase [Azorhizobium caulinodans ORS 571]
 gi|158329223|dbj|BAF86708.1| ATP-binding ATPase [Azorhizobium caulinodans ORS 571]
          Length = 864

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/679 (33%), Positives = 357/679 (52%), Gaps = 26/679 (3%)

Query: 118 WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
           W+       L      L +EG  F ++   +    ++IEGR     A LR+++      E
Sbjct: 195 WVGVEAVAALEGPLAALVREGTPFRILTRDRAAALLQIEGR---GVAGLRVIA----AGE 247

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE---TEGIVFQ 234
            A    +    S      + +FD     +W R   G +   N +++K       EG    
Sbjct: 248 PAAG--EGVGASTQAQALRAIFDGAPVPMWWRSPDGTLEAVNAAFEKAVACGAPEG---- 301

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
               E  +L  +  ++   ++    + +   V  +  G  +   +V     +G AG+AID
Sbjct: 302 ---AERSELLDQAAREAAEAAHRQGQPYVARVRVVAGGKRRLLDVVEAAGPYGAAGVAID 358

Query: 295 VSKE----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           V+ +    +     L      L  L  A+ IF  +  + FHN ++  L++++ AFL   P
Sbjct: 359 VTDQEAARVEHERSLAAHRRTLDQLNTAVVIFGPDDRVDFHNTAYERLFDLEPAFLDQRP 418

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           S  E+LE LR+A K+PEQ +++ W+E +   Y+  E   D WHLP GQ L V+      G
Sbjct: 419 SQSEVLERLRAARKVPEQADFRAWREQLRESYRGLEPMNDWWHLPGGQMLRVVAAPTAEG 478

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  ++F++++  + LE +YN+L+++QGET+D L+E VAVFG DGR++L N AF  LW   
Sbjct: 479 GVTFLFDDMSEHMALEGRYNSLIRIQGETLDGLAEAVAVFGSDGRLRLYNQAFLRLWSLS 538

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L    HI  +AA C   + ES  W     +IT+ D  R+     LE     VL+ + 
Sbjct: 539 AQALGERPHIDAVAAMCRPKHGESGAWARIRNVITALD-HREGETLRLETADKRVLDGAA 597

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            PLP+  TM+TF +VTDSV+ ERAL E+NEAL  AD +KN+FV HVSY LR+PL ++IG+
Sbjct: 598 QPLPDGGTMVTFRDVTDSVKVERALIERNEALEAADVLKNAFVGHVSYHLRTPLNSLIGY 657

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             +L     G +N +Q +++ +++ S+  L  L++DILDLAT+DAG M L+   + +   
Sbjct: 658 AHMLAEGVAGEMNPRQREFMTHVNQSADALRELIDDILDLATIDAGAMALDLDAVDVTAT 717

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L     S+   +    +R+++   G+ G+F+AD +R+ QI   +LSNA+     GS V L
Sbjct: 718 LEAAADSVRDLLESAGVRLELEWSGEPGTFIADGRRVRQILFNLLSNAIAVEPPGSAVTL 777

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
           +A R     + +V+++G  I     + +F RF S    G+RRGVGLGLSIV SF+ LHGG
Sbjct: 778 RADRLRDALVLTVRDHGPGIDPATVEQLFQRFESAG--GKRRGVGLGLSIVRSFMELHGG 835

Query: 771 HVSISSSDEGVTTINCRIP 789
            V++  +  G T   C  P
Sbjct: 836 TVTLKPAPGGGTLAICVFP 854


>gi|209965987|ref|YP_002298902.1| sensor protein divL [Rhodospirillum centenum SW]
 gi|209959453|gb|ACJ00090.1| sensor protein divL [Rhodospirillum centenum SW]
          Length = 821

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 209/618 (33%), Positives = 335/618 (54%), Gaps = 21/618 (3%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--NTETEGIV--FQKAIGE 239
           +C++LS       +  D++   VW R     I+W N ++ +  +     +V    +  G 
Sbjct: 199 ECRRLS-------LALDTVPVPVWLRGSDLSIVWCNRAFARLLDAAPRAVVDLGLELPGG 251

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--NSFGEAGIAIDVSK 297
           +  L   E+  R  + +  E    E+   +  G+ + +++  +       + G  +D++ 
Sbjct: 252 ALTLPPRELAMRARNGAHAE---TESRYLVVDGDRRLFRLTEMPLDRPDLQLGFGLDITG 308

Query: 298 EITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           E  + D+L    +   E+L  L  AIAIF  +  L+F+NR++ +LW +D  +L + P   
Sbjct: 309 EQEIADELERHVSAHAEVLEQLGSAIAIFGADTRLRFYNRAYAQLWGLDEVWLDSEPGYG 368

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           ELLE +R+  KL EQ+++  WK    + + S  E  ++  HLP+G+TL  +   +P GG 
Sbjct: 369 ELLEDMRARRKLTEQVDFPRWKRQRLAQFTSLLEPEEEMIHLPDGRTLRTLTVPHPFGGL 428

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +++ E++T  + LET YNTL+ VQ ET+D+L E VAVFG DGR+KL NPAF  LW+  E 
Sbjct: 429 MFVQEDVTHTLALETSYNTLMAVQQETLDNLEEAVAVFGGDGRLKLHNPAFLRLWRLSEP 488

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L+   HI  +        +    W    A + +   +R      +E +  SVL YS +P
Sbjct: 489 DLAGEPHIAALIERVRPLMDVGGDWAARRAELVAGLLDRMPRTSRMERVDGSVLTYSQVP 548

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LP+   + + ++VTDS R E+AL   NEAL  AD +K+ F+ +VSY+LR+PL  I+GF +
Sbjct: 549 LPDGAVLFSAMDVTDSARVEQALRATNEALETADRLKSEFIANVSYQLRTPLNAIMGFAE 608

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L     G LN +Q +Y   +  +S  LL LVNDILDLAT++AG M L  + + +  L+N
Sbjct: 609 ILNNQYFGPLNPRQIEYARGVLEASRRLLALVNDILDLATIEAGFMVLERAPVDVAGLVN 668

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            V         +  + ++      +G+  AD +RL Q    ++SNA+ F+  G  +IL A
Sbjct: 669 GVAMLTRDWARQQELDLRTDIPAGIGTLEADEKRLKQALFNLVSNAVRFTPAGGRIILSA 728

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            R   + + SV++ G  IP+D  + VF RF    H+ +  G GLGLS+V+SFI LHGG V
Sbjct: 729 RRAGDEVVLSVRDTGIGIPQDDQQRVFGRFERAHHQSRSGGAGLGLSLVKSFIELHGGRV 788

Query: 773 SISSSDEGVTTINCRIPS 790
            I S+ E  T + C +P+
Sbjct: 789 EIDSAPEHGTEVRCHLPT 806


>gi|114568634|ref|YP_755314.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339096|gb|ABI64376.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 829

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 217/674 (32%), Positives = 347/674 (51%), Gaps = 27/674 (4%)

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSG-------SCAFLRILSLDGIYSELAETTLKCK 186
           L ++GQ F L     +   ++++GR +G       S A +R L   G    + E     +
Sbjct: 139 LSEKGQPFSLTILGPSGRFLEVDGRAAGTQLVVWLSDATIRGLEESGARGRIEEAR---R 195

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
            +S     F  +        W  +  G I WAN +Y +  E + +    A+ E + L   
Sbjct: 196 LVSKDPLAFLDMLGRAPVPAWRMNATGRIEWANQAYVEAVEGDAV---DAVIEKQTLLDA 252

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
            +      ++   +   E    +  G+ +  K +    S G AG A+DV+        L 
Sbjct: 253 AMTDLASRATIAGEPVDEMRIVVIDGSRRGLKFLVFPVSGGAAGFALDVTDGEEAKAALA 312

Query: 307 HTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                  + L+++  A+ +FD+++ L FHN++F  L+++D A+L   P + + L+ +R  
Sbjct: 313 RFRRAHDDTLNHMAEAVVVFDRSKRLNFHNKAFSNLFKLDDAWLNERPGHGQFLDRMREK 372

Query: 363 NKLPEQLNWKTWKENIFSVY---KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
             LPEQ ++  WK +  + Y    S ET  + W LP+G+TL V    +P GG + +FE+ 
Sbjct: 373 RLLPEQADFGAWKTDELARYDAPPSEETPDELWPLPDGRTLRVARQRHPLGGLMLIFEDK 432

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T ++ L  +YNTL+ VQ  T+D L E VAVFG +GR++L+N AF  LW  +   L     
Sbjct: 433 TDELALRARYNTLINVQRATLDKLHEAVAVFGANGRLQLNNSAFEDLWGFDAEELDGQPD 492

Query: 480 IRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
              ++ TC+  + +   W D+ A +       RK + G +  L   VL Y   PLP+  T
Sbjct: 493 FDAVSETCAALFTDDRVWTDIKARVTDPSPQARKQVTGEMRRLDGRVLTYLTRPLPDGAT 552

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ + +VTDS R E AL E+ EAL  ++ IK  FV+HVSY+LR+PLT I G+ D+L    
Sbjct: 553 LICWDDVTDSRRIEEALRERAEALETSERIKTEFVEHVSYQLRTPLTTIGGYADMLAQGF 612

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L+ +Q + +  I +++  L  L++DILD+A +DAG ++L    + L D+  E    +
Sbjct: 613 AGELSDRQKEPMSAIQSAAAHLAKLIDDILDVAAIDAGQLELELGDVDLGDVAREAADLV 672

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +   + I++ V I DG LG   ADR RL Q+   +LSNA+   + G  V + A R+  
Sbjct: 673 AARADHHAIKLDVDIEDG-LGLLRADRNRLKQVSMNLLSNAIRHVATGGAVTIGARRNGE 731

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           D    VK++G  I  +   SVF+RF     RG+R G GLGLS+V+    LHGG V + S 
Sbjct: 732 DITLWVKDDGEGIAPEKQASVFDRFA----RGERGGAGLGLSLVKEIAELHGGWVELQSE 787

Query: 778 DEGVTTINCRIPSK 791
            E  T ++C +P +
Sbjct: 788 PERGTLVSCHLPPE 801


>gi|218678232|ref|ZP_03526129.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 894]
          Length = 220

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 161/220 (73%), Positives = 187/220 (85%)

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           +PNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFGPD
Sbjct: 1   MPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFGPD 60

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           GRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER+S
Sbjct: 61  GRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRS 120

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN FV
Sbjct: 121 GQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFV 180

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           QHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++I
Sbjct: 181 QHVSYELRSPLTNIIGFTDLLRTQGVGPLNDRQAEYIDHI 220


>gi|254292570|ref|YP_003058593.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254041101|gb|ACT57896.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 814

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 214/671 (31%), Positives = 355/671 (52%), Gaps = 23/671 (3%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL--SLDGIYSELAETTLKCKK--L 188
           +LR EG  F L     N   ++ +GR +G  A L +   ++ G+    A   L+  +  +
Sbjct: 131 QLRTEGAPFSLTIIGPNGRFLEADGRTAGGRAVLWVSDSTIKGLEESGARGRLEEARQII 190

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI--VFQKAIGESRKLFKE 246
           +   + F  +     F+ W    AG + W N SY K  E + +  V  + I     +  +
Sbjct: 191 ARDPTAFLEMLGKAPFIAWRLSGAGRLQWVNESYLKAVEGKNLDHVLDRQI-----MLDQ 245

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
           EI  +  +    +    +T   +  G  ++ +++    S G AG+A DVS+E    + L 
Sbjct: 246 EIASQAQTVLTDKTESRKTRYIVIDGERRAMRVLMFPLSGGVAGMAFDVSEEEAARETLE 305

Query: 307 HTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                  + L++++ A+AIF  +R L FHN+ F ELW+++  FL   PS+ E L+ LR +
Sbjct: 306 RHRRAHDDTLNHVSDAVAIFGADRKLSFHNKHFEELWDLNPRFLLEKPSHGEFLDRLRES 365

Query: 363 NKLPEQLNWKTW--KENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
             LP Q  +  W  KE  ++   S  +  ++ W LP+G+TL V    +P GG + +F+++
Sbjct: 366 KLLPAQQKYSDWRTKELDYNTGGSKRSIDENMWMLPDGRTLQVTRQKHPLGGILLLFKDI 425

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + ++ L+  YN L+  Q  T+D LSE VAV+G DG ++LSN +F  LW+ E  +L     
Sbjct: 426 SDELTLKANYNALINQQKATLDKLSEAVAVYGGDGGLRLSNASFEKLWQLEPAKLKNAPE 485

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQT 538
              +A  C+  +++   W      +T+   E R+  +G ++    S++ +   PLP+  T
Sbjct: 486 FDEVAEMCAPLFHDKSVWAAIKGRVTNPTPEARQEFRGEMKRSDGSIVTFLTQPLPDGAT 545

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ FV+ T S R E AL E+ EA + AD +K  FVQ+VSY+LRSPLT I+G+ + L++ K
Sbjct: 546 LIAFVDATASRRVEGALRERAEAFQAADRLKTEFVQNVSYQLRSPLTTILGYAEFLESGK 605

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            GSLN++Q + V  I  +S  L  L+ +ILDLAT++AG M L+   + L  L++E  + +
Sbjct: 606 QGSLNAQQLENVNSILQASDHLSRLIENILDLATIEAGRMDLDLKDLDLKSLIDESVEMV 665

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                +  + IKV     +GS  AD +R+ QI   +L+NA+ F++ G T+ +KA +  G 
Sbjct: 666 VANAADTKVSIKVDCPATIGSMHADERRIKQILFNLLTNALRFTTAGDTIKVKAEKAEGV 725

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
               V + G  +  +     F+ F S    G  RG GLGL++V SF+ LHGG V++ S  
Sbjct: 726 IRLQVTDTGKGVAYEQQAEAFDAFTS----GDNRGAGLGLALVRSFVELHGGWVAMKSKP 781

Query: 779 EGVTTINCRIP 789
               T+ C +P
Sbjct: 782 TKGATVICCLP 792


>gi|114797839|ref|YP_759129.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444]
 gi|114738013|gb|ABI76138.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444]
          Length = 815

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 206/669 (30%), Positives = 361/669 (53%), Gaps = 19/669 (2%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI--LSLDGIYSELAETTLKCKK--L 188
           +LR+ GQ F L     +   ++ +GR +G  A + I   ++ G+    A   L+  +  +
Sbjct: 135 ELRESGQPFSLTIIGTSGRFLEADGRTAGVRAVVWINDTTIKGLEESSARGKLEEARQVI 194

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
           +   + F  +     F  W     G + WAN +Y +  +   +     + E + +  + +
Sbjct: 195 ARDPTAFLDMLGKAPFPAWRVSGMGRLQWANPAYIEAVDGGNL---DRVLERQLMLDQAV 251

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
            ++   +        ET   + +   ++ +++    S G   +A DV+++    ++L   
Sbjct: 252 SEQARKTITDGAEHDETRHIVVNNQRRAMRVLTFALSGGAGCMAFDVTEQENSREELNRH 311

Query: 309 Y----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                E L+++  A+AIF  +R L F+N++F ++W+++  FL   PS+ +LL+ LR   K
Sbjct: 312 VRAHDETLNHVADAVAIFGPDRKLNFYNKAFRDMWDLEETFLLDRPSHGQLLDRLREKKK 371

Query: 365 LPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           LP ++N+  W+    S Y   +  K D W LP+ +TL V    +P GG + +F+++T  +
Sbjct: 372 LPARMNYAEWRAEEISYYLDIDGVKEDKWSLPDNRTLSVTRQRHPMGGLLVLFKDITDHL 431

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L+T++N L+K Q  T+D+L E VAVFG DGR++L N AF  +W    +RL       ++
Sbjct: 432 SLQTRFNALIKTQSSTLDNLHEAVAVFGSDGRLRLHNRAFERVWDIPADRLKDRPDYADV 491

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            + C   +++ D WD     IT     R+S  G +     S+L Y   PLP+  TM+ F 
Sbjct: 492 ISGCVPLFHDMDIWDAIKVHITD-PTARQSTTGEMRRSDGSLLTYLTHPLPDGNTMIAFA 550

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT + R E AL ++ EA   AD +K  FV++VSY+LRSPLT I G+ +LL+T + G L 
Sbjct: 551 DVTATRRVESALRDRAEAFEAADRLKTEFVRNVSYQLRSPLTTIFGYAELLETQRNGPLT 610

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ +V  I ++S  L  L+ +ILDLA ++AG + L  S + L +++++  + + +K  
Sbjct: 611 ERQTDHVRAILSASDHLNKLIENILDLALIEAGRLDLELSELDLEEVIHQSVELVVSKAE 670

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           +  + ++    G+LG    D +R+ Q+   ++SN++ F+  G  +++ A R  GD I  S
Sbjct: 671 DTEVSVRADITGRLGQMRGDERRIKQVLFNLISNSLRFTEPGGEIVVSAQR-MGDMITLS 729

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++NGS +  D   + F+ FVS    G +RG GLGL++V+ FI+LHGG V + S D G  
Sbjct: 730 VRDNGSGLEADKRATSFDSFVS----GDQRGAGLGLALVKHFIHLHGGTVGMKSVDGGGL 785

Query: 783 TINCRIPSK 791
            + C +PS+
Sbjct: 786 EVTCWLPSQ 794


>gi|144900968|emb|CAM77832.1| sensor histidine kinase protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 845

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 211/695 (30%), Positives = 355/695 (51%), Gaps = 31/695 (4%)

Query: 122 HHYIKLSKATEKLRKEGQSFD----LVAETQNDCAIKIE-----GRVSGSCAFLRILSLD 172
           H  ++L  A   LR EGQ+F+    L A ++   A+ +      G +     + R +S  
Sbjct: 152 HDGLRLETAIGVLRDEGQAFEVDLTLSAGSRRIRAMGVRAASPAGDMLADLVWFRDVSDS 211

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            +  +    +L+   L+   +  K L D+L   VW RD+   +L  N +Y    E     
Sbjct: 212 AVAVDDLARSLQA--LAADATYLKALIDTLPMPVWLRDEDLSVLMVNKAYAAAVEATSA- 268

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKSYKIVRVLNSFGE 288
            + A+    +L  ++  +   + +A  +   E  S   H    G  +   I  +    G+
Sbjct: 269 -EAAVQAQVELASDDHVREARALAARARAAGEPRSASFHLVLAGERRLAHITEMPLEVGD 327

Query: 289 ----AGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
               AG   D ++   + +QL+H      E+L  L+ AIAIF  +  L F N +F  LW 
Sbjct: 328 TLLTAGFIEDHTRVEELQEQLSHHVSAQVEVLERLSTAIAIFTTDTRLAFFNTAFSRLWR 387

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQT 399
           ++  +L   P+   +++ LR    LPE  +++  KE     + S     +T  HLP+G+T
Sbjct: 388 LERDWLENQPTYGAVMDALRDRRLLPEAADYRALKEEELRRFISLIDPIETLMHLPDGRT 447

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           L  +V+ +P GG I+ +E+ T  + +E  +NT + VQ  T+DHL EG+AVFG D R+KLS
Sbjct: 448 LRRVVSPHPYGGLIFTYEDFTDTLAMERSFNTAMAVQRATLDHLHEGLAVFGDDRRLKLS 507

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYY----NESDGWDLFAAIITSFDDERKSLQ 515
           NPAF  +W    + L+   H+  +      Y+    + +  W      + +   ER+  +
Sbjct: 508 NPAFARMWGLSVDDLAGEPHLNELVERLRPYFEGRPDRASTWAPARERLLALVGERRGGE 567

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             LE     +L+ + +PLP+  ++L F++VTD+ R ERAL E+NEAL  AD +K+ F+ +
Sbjct: 568 WRLERQDGMILDCASVPLPDGASLLAFLDVTDTARVERALIERNEALAAADTLKSEFMSN 627

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS E+  PLT IIGF ++L +   G L+ +Q  Y++ I  +   L +L+ DILDLA ++A
Sbjct: 628 VSAEVAKPLTTIIGFAEMLDSDYFGKLSKRQHDYMKGIVEAGNALKSLIADILDLAAIEA 687

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G + L   T+ ++ +L+ V   +  ++ E  +++       +G  VAD++RL Q+   ++
Sbjct: 688 GHLTLELDTVDIHPMLSSVLGLVRERVREKKLQLDFDCPLDMGWIVADQRRLRQVMFNLI 747

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
            NA+ ++  G  + ++A R +G+    V + G  IP +  + VF  FV   H GQ  G G
Sbjct: 748 GNAVKYTPNGGAIAVRAERRDGEVALIVADTGPGIPPEDMERVFKSFVRTIHDGQ-DGAG 806

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL++V  F+ LHGG V + S     TT+  R+PS
Sbjct: 807 LGLALVRRFVELHGGTVELDSVPGQGTTVTVRLPS 841


>gi|83945797|ref|ZP_00958140.1| tyrosine kinase DivL [Oceanicaulis alexandrii HTCC2633]
 gi|83850800|gb|EAP88662.1| tyrosine kinase DivL [Oceanicaulis alexandrii HTCC2633]
          Length = 818

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 243/814 (29%), Positives = 394/814 (48%), Gaps = 62/814 (7%)

Query: 14  IEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYH 73
           +++ TL    I   G++A  L +++    L    R   A+K+       +E  D+  +  
Sbjct: 7   VQLATL----IVTGGSVAFALASSVWAYRLTAGARK--ARKLWRDRLLAAE--DRAERNT 58

Query: 74  SLLTENNCLTIVWDGKDET-------------PEIIGQLHQRIDIPQTD-------TDLL 113
           SL   +  + +VWD   ++             P  +  L Q  ++ Q+        TD+L
Sbjct: 59  SLFAAHPGVVVVWDVPPQSEAEHWSAPKLYGSPAALASLLQFAELSQSAGANGQIATDIL 118

Query: 114 S----FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL 169
                F         +        L  EGQ F L    ++   I+ +GR +G     R L
Sbjct: 119 DSISEFSARNASGETVSFRDRARALMAEGQPFSLTLTGRSGRKIQADGRPAG-----RQL 173

Query: 170 SLDGIYSELAETTLKCKKLSNHISV--FKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            +    + L +T        +H     F  +        W  DQ G + W N +Y K  E
Sbjct: 174 VIWLTDTALRQTEGASDDEISHDDPIGFMDMMGRNPVPAWRMDQKGRLNWVNNAYVKAVE 233

Query: 228 TEGIVFQKAIGESRKLFKEEI---KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
              +   + I   R+L  E     + R + +S   +     V  +  G  +   +     
Sbjct: 234 ASDVA--EVI--DRQLLLEPTLGEQARDVLNSGDPRTGARGV--VLAGQRRVMSVTSYPV 287

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
             G  G A+DV+        L    E     L+++T A+AIFD+ + L F+NR+F +++ 
Sbjct: 288 QGGVTGFAVDVTDGEEAKAALNRFREAHDLTLNHMTEAVAIFDRAKKLVFYNRAFSQMFN 347

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK----DTWHLPN 396
           ++ AFL   P++  LL+ LR   +LPEQ ++  W++   S Y+++        + W LP+
Sbjct: 348 VEEAFLNDRPAHGVLLDRLREKRRLPEQADYSAWRQAELSRYETAPNQDAEPDELWALPD 407

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G+TL V    +P GG + +FE++T Q+ L+ +YNT +KVQ  T+D L E VAVFG DGR+
Sbjct: 408 GRTLRVARQRHPMGGLLLIFEDMTDQLSLQARYNTQLKVQRATLDKLHEAVAVFGSDGRL 467

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQ 515
           KL N AF +LWK +  RL  G H  ++ A+C+  Y+ ++ W    A IT    E RK++ 
Sbjct: 468 KLRNAAFETLWKLDPERLD-GVHFDDMVASCTPLYDNAEAWGQLKARITDPSPESRKAMT 526

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +     SVL +   PLP+  T++ + ++TDS R E AL ++ EAL  ++ IK  FV+H
Sbjct: 527 GEIRRADHSVLTWLTRPLPDGATLIAWDDITDSRRIESALRDRAEALEASERIKTEFVEH 586

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VSY+LR+PLT I G+ DLL     G L+ +Q +++  I  +S  L  L++DILD+A +DA
Sbjct: 587 VSYQLRTPLTTIHGYADLLAGGFAGDLSDRQKEHMGAIQTASAQLGKLIDDILDIAAIDA 646

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G +++    + ++ L  E  + IA++   + I++ + +D       AD +RL Q+   +L
Sbjct: 647 GQLEMELGDVNVHALAEESMELIASRAEHSGIKLTLNADEDGPLIRADGKRLKQVIYNLL 706

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           +NAMD  + G  V + A     D    V ++G  I  D    +F RF     RG   G G
Sbjct: 707 TNAMDHVNPGGAVEVGAEVAGDDVSLWVADDGVGIAPDRQAKIFERF----ERGDGGGAG 762

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL++V   I LHGG V + S     T + C +P
Sbjct: 763 LGLALVNDIIRLHGGWVELESEPGEGTRVTCHLP 796


>gi|295687664|ref|YP_003591357.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295429567|gb|ADG08739.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 769

 Score =  317 bits (812), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 197/678 (29%), Positives = 335/678 (49%), Gaps = 34/678 (5%)

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
           H  KLS   E+    GQS    A  Q    + +EGR +G+ A+LR+  + G  + L    
Sbjct: 107 HAQKLSALFER----GQSCAFDARGQGGW-VSVEGRAAGAMAWLRLAPVSGHDAGLPSA- 160

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
                     + F    DS+    W     G  +W N ++ +            +G+S  
Sbjct: 161 ----------ARFAAFVDSVVEPAWIAGADGQAVWGNTAFVRAVGAGSASAPALLGKS-- 208

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKI-VRVLNSFGEAGIAIDVSKEIT 300
            F   +   M+  +A +    E +  +   G  +++++  + L   G      DV++   
Sbjct: 209 -FDRAVDA-MVVEAATKGERSEAIRWVNLEGRRRAFRLSAQPLEGGGVGVFCADVTEIED 266

Query: 301 VNDQLTHTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           V D      E     L+++  A+AIF   R L FHN +F ELW ++ A+LA  P++ E+L
Sbjct: 267 VRDAFKKHVEAHDETLNHIAEAVAIFSATRRLSFHNTAFAELWGLEPAWLADRPTHGEIL 326

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           + LR   +LPE +++  WK    + Y+S      D WHLP+G+TL V+   +P GG + +
Sbjct: 327 DRLRQRRRLPETIDYAVWKAAELARYESLGPQADDLWHLPDGRTLKVVRQPHPLGGMLLI 386

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           + ++T ++ L+ +YN L++VQ  T+D L++ VAVFG DGR++L N AF + W    + L 
Sbjct: 387 YSDITGELRLKAQYNALIQVQQATLDKLNDAVAVFGSDGRLRLHNEAFETFWNVTPHALE 446

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLP 534
                  +   C    ++   W      +   D + R    G +    D ++ Y   PLP
Sbjct: 447 AAGDFEGVVELCVPRLHDLAFWRELKGRVADPDPQMRAPTSGEVRTSDDRIVVYQSRPLP 506

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  T++ F +VTD+   + AL +++ AL +A+ +K  FV +VSYELR+PLT IIG+++LL
Sbjct: 507 DGATLIAFADVTDTRELQSALADRSAALDEAERLKRDFVGNVSYELRTPLTTIIGYSELL 566

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +    L+ +   +V  + A++T L   ++D+LD+A +DAG M L    I ++DLL   
Sbjct: 567 ERAD--GLSERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIQDIRVSDLLMNA 624

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++          + + V  +  +G    D +RL Q    ++ NA+  +  G  V L A R
Sbjct: 625 QERALKDAQLGGVTLAVECEEDVGLIRGDAKRLAQTLDHLVENALRQTPPGGRVTLSARR 684

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             G+    V + G  +P  +   +F+RFV       R G GLGL++V++ + LHGG V++
Sbjct: 685 ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGR----DRGGPGLGLALVKALVELHGGWVAL 740

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     +T  C +P  +
Sbjct: 741 ESEPGNGSTFTCHLPETQ 758


>gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199]
 gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199]
          Length = 666

 Score =  316 bits (810), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 291/536 (54%), Gaps = 15/536 (2%)

Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY--------EILHN 314
            E+ + + HG+ +   +V V  +    G  +  ++++T  +QL            ++L  
Sbjct: 127 SESRNMVVHGDRR---LVDVTETPAADGGTVGTARDLTALEQLQSELARHVDAHADVLET 183

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           L  A+AIF  ++ L F N +F  LW +D   L  +P+  E+LE  R   +LPEQ +++ W
Sbjct: 184 LRTAVAIFGPDKRLIFANTAFGRLWSVDADLLERDPTLTEVLERARENRRLPEQSDFRAW 243

Query: 375 KENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +++   ++ +   +H++   LP+  T+ + VTS+P GG + +FE++T ++ LE  YNTL 
Sbjct: 244 RDDFNRLFTTLIGSHEELLFLPDDTTVRMAVTSHPFGGLLMVFEDVTDRLTLERSYNTLT 303

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            VQ ET+D+L +G+A FG DGR+KL NP +R  W   ++      H+  +       + E
Sbjct: 304 AVQQETLDNLYDGIAAFGADGRLKLINPTYRHQWGLPDDFGDDEPHVGLVLEAMRLKFGE 363

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            D W    A   +   ER    G +E     VL+Y ++PLP+  ++L+F +VTD++  +R
Sbjct: 364 EDRWPSVKAEWVTRLAERVPRSGRIEQSDGRVLDYGVVPLPDGASLLSFRDVTDTLAVQR 423

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E+ EAL  AD +K+ F+ +VSYELR+PL  IIGF+++L+    G +N +Q +Y   I
Sbjct: 424 ALQERTEALEMADRLKSEFLANVSYELRTPLNAIIGFSEILEQEYAGPMNDRQKEYARAI 483

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS  L+ LVNDILDLA+++AG ++L    +    L+  V+     +     I   V  
Sbjct: 484 LQSSNRLVRLVNDILDLASIEAGYLELERIEVDPLRLIEAVEGLGRERARARRIDFSVRI 543

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           DG +   + D +RL Q    ++SNA  F+  G  V++    D+   +F V + G  I  +
Sbjct: 544 DGTVAPIMVDERRLTQALYNLVSNAFAFTPDGGRVLVTVEDDDDMVLFRVADTGVGIALE 603

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF+RF      G+  G GLGL++V+S + LH G V + S     T + CRIP
Sbjct: 604 DQGRVFDRF---ERAGRDAGAGLGLALVKSLVELHHGTVELLSEPGHGTEVICRIP 656


>gi|83309724|ref|YP_419988.1| PAS/PAC domain-containing protein [Magnetospirillum magneticum
           AMB-1]
 gi|82944565|dbj|BAE49429.1| PAS/PAC domain [Magnetospirillum magneticum AMB-1]
          Length = 844

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/522 (32%), Positives = 291/522 (55%), Gaps = 27/522 (5%)

Query: 289 AGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           AG A+D+++   +  +L        ++L +L  AIAIF  +  L F N +F  LW ++  
Sbjct: 323 AGYALDLTRVEELQQELARHASAHAQVLEHLATAIAIFSTDTRLTFFNTAFTRLWRLEAE 382

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKEN----IFSVYKSSETHKDTWHLPNGQTL 400
           +LA  P+   +L+ LR    LPE  +++ +KE+      S+  ++ET     HLP+G+TL
Sbjct: 383 WLAAQPTYGAVLDSLRERRLLPEVADYRAYKEDELKRFISLIDAAET---LLHLPDGRTL 439

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             ++ ++P GG I+ +E++T  + LE  +NT + VQ ET+DHL EGVAVF  DGR++L N
Sbjct: 440 RRMIAAHPYGGLIFTYEDVTDTLALERSFNTALAVQRETLDHLHEGVAVFKGDGRLRLFN 499

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDDERKSLQG 516
           PA+  +W    + L    H+  +      Y+      +  W      + +  + R    G
Sbjct: 500 PAYARIWNLAPSMLESEPHLNELVEAHRPYFEGGAERASVWPEMRERLMALFNTRAPQSG 559

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +E L DS+++++ +PLP+   +LT+++VTDS R ERAL E+NEAL  AD +K+ F+ +V
Sbjct: 560 RVERLDDSIVDFASVPLPDGAMLLTWLDVTDSARVERALRERNEALAAADLLKSEFIANV 619

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S E+R PLT +IGF+++L     G LN +Q +Y   I+ +   L  L++DILDLA ++AG
Sbjct: 620 SAEVRKPLTTVIGFSEMLAAEYFGKLNKRQHEYARGITEAGQGLQALISDILDLAAIEAG 679

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M L   T+ ++ +L+ V   +  ++ E  + +       +G  VAD +RL Q+   +L 
Sbjct: 680 QMALELDTVDVHPMLSGVLGLVRERVREKKVTLDFDCPLDIGWIVADERRLRQVLFNLLG 739

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV-- 754
           NA+  +  G  V ++A R   +   ++ + G+ + ++  + +F  F +    G+R  +  
Sbjct: 740 NALKRTPSGGKVSVRAERRPSELALTISDTGTGLSDEQRERLFGGFATG---GRREALPA 796

Query: 755 -------GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  G+GL++V+ F++LHGG V ++S+    T +  R+P
Sbjct: 797 GRADDDSGIGLALVQRFVDLHGGRVELASAPGEGTVVTVRLP 838


>gi|304320655|ref|YP_003854298.1| sensory box histidine kinase, hypothetical [Parvularcula
           bermudensis HTCC2503]
 gi|303299557|gb|ADM09156.1| sensory box histidine kinase, hypothetical [Parvularcula
           bermudensis HTCC2503]
          Length = 935

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 206/691 (29%), Positives = 341/691 (49%), Gaps = 36/691 (5%)

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           L +    LR  G  F     T     I+ +GRV+G+   L +       +E A    + +
Sbjct: 189 LREKVATLRTHGIVFSGAVITDEGRPIECDGRVAGNQVTLWLTDPVVRLAEEAGVVGQAR 248

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET----EGIVFQKAIGESRK 242
             +  +       D    + W R     + W N +Y +  E     E I  Q  I  + +
Sbjct: 249 DRAADLHGALNQLDRAPIVAWRRGSNLALEWVNQAYVEMVEAINFAEVIDNQIEIDPAFR 308

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVS 296
              E  K+    S    +     V+    G  +  +++ V        SFG  G+AID++
Sbjct: 309 PIAERAKEEAERSG--RRGTDGVVAVNVKGQRRLLRVIEVPMHGSVGASFG--GMAIDIT 364

Query: 297 KE----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++    + +  Q       L  L+ A+A+FD  + L++ N++F++LW +D++ L T PS+
Sbjct: 365 RQERAQLDLKRQQRAHKMTLDQLSTAVAVFDAAQSLEYSNQAFLDLWGLDVSILRTRPSH 424

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE----------THKDTWHLPNGQTLHV 402
            ELL+ LR A KLP + ++  WK N   +Y   +             + W LP G+TL V
Sbjct: 425 GELLDLLRHAGKLPAKEDFNAWKTNELRLYTEVQGEDRSANEGAAPDEIWDLPEGKTLRV 484

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               +  GG   +FE++T  + L++++ T + VQ  T++ L++GVAVFG DGR+ L N +
Sbjct: 485 RHQRHGLGGVSVVFEDITETLRLQSRFQTQISVQRATLNTLAQGVAVFGVDGRLALHNRS 544

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW--DLFAAIITSFDDERKSLQGT-LE 519
           F +LW    ++L    H  +++   +    + D     L   I++   ++R S  G  L 
Sbjct: 545 FETLWSFSRDQLDDRPHWDSLSEPMAERGRDVDEGLARLKDRIVSLAHEDRVSRVGEELT 604

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           L    +L  +  PLP+  T++TF+++TD+   E+ L  +N+ L  AD IK  FV H+SY+
Sbjct: 605 LKDGRILLPATSPLPDGATLVTFLDITDAREREKDLEIRNQILEDADRIKTRFVDHISYQ 664

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  IIGF +++++  +G LN +Q  Y   I  +S  LL+LVNDI+DLA +DAG + 
Sbjct: 665 LRNPLNTIIGFAEMMESEMVGPLNDRQKDYAATILTASNHLLDLVNDIIDLAAIDAGRLG 724

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    + + DLL       A K  ++ I +KV     +G+  AD +RL Q+   +L+N  
Sbjct: 725 LELQEVDVRDLLESAAMFAALKAEDSEISLKVDCPKDIGTLKADERRLKQVLFNLLANGF 784

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            F+  G  V+L A RD       V++ G  + P+D   +VF+RF S             L
Sbjct: 785 SFTQAGGQVVLGARRDGDAIRIWVEDTGRGVSPQDQA-TVFDRFESAGPGAGAGLG---L 840

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++V SF+ LHGG V ++S +   T + C +P
Sbjct: 841 ALVNSFVELHGGFVRLASQEGAGTVVTCHLP 871


>gi|6435833|gb|AAF08344.2|AF083422_1 tyrosine kinase DivL [Caulobacter crescentus CB15]
          Length = 769

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 181/647 (27%), Positives = 318/647 (49%), Gaps = 27/647 (4%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
           + +EGR +G+ A+LR+  +D   S L              + F    DS+    W     
Sbjct: 132 VSVEGRAAGALAWLRLAPIDRADSGLPTA-----------ARFAAFVDSVVEPCWIAGAD 180

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
           G  +W N ++ +             G+S   F       ++ ++   +           G
Sbjct: 181 GQAIWGNAAFVRAVGAASAHAPALAGKS---FDRGADAEVVEAAGKGERREALRWINVEG 237

Query: 273 NNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRY 327
             +++++  + L+  G      DV++   V D      E     L+++  A+AIF Q R 
Sbjct: 238 RRRAFRLSAQPLDGGGVGVFCADVTEIEDVRDAFKKHVEAHDETLNHIAEAVAIFSQTRR 297

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SE 386
           L +HN +F ELW ++ A+LA  P++ E+L+ LR   +LPE +++  WK    + Y+    
Sbjct: 298 LSYHNTAFAELWGLEPAWLADRPTHGEVLDRLRQRRRLPETIDYAGWKAAELARYEDLGP 357

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
              D W LP+G+TL V+   +P GG + ++ ++T ++ L+ +YN L++VQ  T+D L++ 
Sbjct: 358 QADDLWDLPDGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLNDA 417

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           VAVFG DGR++L N AF + W    + L        +   C    ++   W      +  
Sbjct: 418 VAVFGSDGRLRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLSFWRELKGRVAD 477

Query: 507 FDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            D + R    G +      ++ Y   PLP+  T++ F +VTD+   + AL +++ AL +A
Sbjct: 478 PDPQMRAPTSGEVRTSDSRIVLYQSRPLPDGATLIAFADVTDTRDLQSALADRSAALAEA 537

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K  FV +VSYELR+PLT IIG+++LL+ +    ++ +   +V  + A++T L   ++
Sbjct: 538 ERLKRDFVGNVSYELRTPLTTIIGYSELLERAD--GISERGRNHVAAVRAAATQLARSID 595

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD+A +DAG M L    I ++DLL   ++          + + V  +  +G    D +
Sbjct: 596 DVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGK 655

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q    ++ NA+  +  G  V L A R  G+    V + G  +P  +   +F+RFV  
Sbjct: 656 RLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGR 715

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                R G GLGL++V++ + LHGG V++ S     +T  C +P  +
Sbjct: 716 ----DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQ 758


>gi|16127714|ref|NP_422278.1| tyrosine kinase DivL [Caulobacter crescentus CB15]
 gi|221236534|ref|YP_002518971.1| two-component sensor histidine kinase divL [Caulobacter crescentus
           NA1000]
 gi|21759092|sp|Q9RQQ9|DIVL_CAUCR RecName: Full=Sensor protein divL
 gi|13425208|gb|AAK25446.1| tyrosine kinase DivL [Caulobacter crescentus CB15]
 gi|220965707|gb|ACL97063.1| two-component sensor histidine kinase divL [Caulobacter crescentus
           NA1000]
          Length = 769

 Score =  300 bits (769), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 182/648 (28%), Positives = 321/648 (49%), Gaps = 29/648 (4%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
           + +EGR +G+ A+LR+  +D   S L              + F    DS+    W     
Sbjct: 132 VSVEGRAAGALAWLRLAPIDRADSGLPTA-----------ARFAAFVDSVVEPCWIAGAD 180

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-H 271
           G  +W N ++ +             G+S     + +    +  +A +    E +  +   
Sbjct: 181 GQAIWGNAAFVRAVGAASAQAPALAGKSFDRGADAV----VVEAAGKGERREALRWINVE 236

Query: 272 GNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI----LHNLTVAIAIFDQNR 326
           G  +++++  + L+  G      DV++   V D      E     L+++  A+AIF Q R
Sbjct: 237 GRRRAFRLSAQPLDGGGVGVFCADVTEIEDVRDAFKKHVEAHDETLNHIAEAVAIFSQTR 296

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385
            L +HN +F ELW ++ A+LA  P++ E+L+ LR   +LPE +++  WK    + Y+   
Sbjct: 297 RLSYHNTAFAELWGLEPAWLADRPTHGEVLDRLRQRRRLPETIDYAGWKAAELARYEDLG 356

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
               D W LP+G+TL V+   +P GG + ++ ++T ++ L+ +YN L++VQ  T+D L++
Sbjct: 357 PQADDLWDLPDGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLND 416

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            VAVFG DGR++L N AF + W    + L        +   C    ++   W      + 
Sbjct: 417 AVAVFGSDGRLRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLSFWRELKGRVA 476

Query: 506 SFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             D + R    G +      ++ Y   PLP+  T++ F +VTD+   + AL +++ AL +
Sbjct: 477 DPDPQMRAPTSGEVRTSDSRIVLYQSRPLPDGATLIAFADVTDTRDLQSALADRSAALAE 536

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ +K  FV +VSYELR+PLT IIG+++LL+ +    ++ +   +V  + A++T L   +
Sbjct: 537 AERLKRDFVGNVSYELRTPLTTIIGYSELLERAD--GISERGRNHVAAVRAAATQLARSI 594

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +D+LD+A +DAG M L    I ++DLL   ++          + + V  +  +G    D 
Sbjct: 595 DDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDG 654

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +RL Q    ++ NA+  +  G  V L A R  G+    V + G  +P  +   +F+RFV 
Sbjct: 655 KRLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVG 714

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 R G GLGL++V++ + LHGG V++ S     +T  C +P  +
Sbjct: 715 R----DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQ 758


>gi|254419079|ref|ZP_05032803.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196185256|gb|EDX80232.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 782

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 190/646 (29%), Positives = 330/646 (51%), Gaps = 25/646 (3%)

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           G++F+ + E  +    +IEGRV+G  A+LR+     +    A+ T          S   +
Sbjct: 118 GKAFEGLIELGDVEPWRIEGRVAGGGAWLRLSPASRVMLTGADATE---------SGLAL 168

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           L D+     W  D AG + WAN  +      + +   +  G S     + +         
Sbjct: 169 LGDASPIPTWVVDGAGKLAWANRVWLHEIGADSVETARNKGLSFDRGADALVAEAGRLGV 228

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-GIAIDVSKEITVNDQLTHTY----EIL 312
            ++ F  T      G+ ++++I+      G     AI+V++     D L        E L
Sbjct: 229 RQEGFRWTTGG---GHRRAWRIIAEPAGGGAVTAFAIEVTEAEETRDTLRRHVDAHDETL 285

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
           ++L  A+AIF  ++ L FHN +F  L++ID A+L   P++ ELL+ LR   +LPE +++ 
Sbjct: 286 NHLADAVAIFGPSKRLAFHNTAFQTLFDIDPAWLDERPTHAELLDRLRQRRRLPEVMDYA 345

Query: 373 TWKENIFSVYKSSE-THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
            WK      Y +S+ +  D+W LP+G+TL V+   +P GG + +F ++T +++L +++N 
Sbjct: 346 GWKARELEFYGASQASPDDSWSLPDGRTLRVVRQPHPLGGILLIFSDITDELNLRSRFNA 405

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            ++VQ  T+D L++ VAVFG DGR++L N AF + WK    +++  T    +A  C    
Sbjct: 406 QIQVQTATLDKLNDAVAVFGSDGRLRLHNEAFETFWKLSAEQIAGSTDFDALAELCKAVL 465

Query: 492 NESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
            +   W    A +   D E R ++ G    +   +  +   PLP+  T++ F ++T    
Sbjct: 466 PDPALWLGLKARVADPDPESRVAISGEGRTIDGRIAAWQTRPLPDGATLVAFSDITARRG 525

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL ++ +AL ++  +K  FV  VSYELR+PLT I+G+++LL+T  +G L  +  Q+ 
Sbjct: 526 LEQALVQREQALAESQALKREFVGSVSYELRTPLTTIVGYSELLET--MGDLPERGRQHA 583

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  +++ L   ++D+LD+A +DAG M+L+   + + DLL +  + +  K+      + 
Sbjct: 584 GAIRVAASQLARSIDDVLDMAQIDAGEMELSLGDVRVQDLLEQAAERVRAKVEGRGATLT 643

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V     L    AD  R+ Q  + +L NA    S+G  V L A     +   +V ++G  I
Sbjct: 644 VTCPPGLKPIRADDHRIGQALNHLLENAARAVSEGGAVTLSAEMAPSEMRVTVSDSGRGI 703

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P  +   VF+RFV    R +R G G+GL++V++ + LHGG   + S
Sbjct: 704 PYHLQAHVFDRFV----RRERGGPGVGLALVKALVELHGGWAEVES 745


>gi|302381632|ref|YP_003817455.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192260|gb|ADK99831.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 787

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 191/658 (29%), Positives = 329/658 (50%), Gaps = 28/658 (4%)

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +A   L  EGQ+FDL      D   +++GR  G  A++ +  L  + +E ++      +
Sbjct: 121 PEAVRLLLDEGQAFDL-----RDGDWRVQGRPFGGEAWIGLSHL--VPAERSDVV--PGE 171

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
               +    ++ D+     W  D  G ++WAN ++        +   +  G       ++
Sbjct: 172 APGGLGA-GLIADASPSPTWVVDGQGQLVWANHAWLTEVRAPSLEEAREAGAVFDRGADQ 230

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGI--AIDVSKEITVNDQ 304
           +   +      ++ F  T      G  +++KI+   L   G   +  AID+++     D 
Sbjct: 231 LAAEVSRMGVRQEGFRWTAG---DGRRRAWKIMAEPLAGVGGPVLVFAIDMTEAEETRDT 287

Query: 305 L----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L    T   E L++L  A+AIF  +R L FHN +F  L+ +D A+L   P++ ELL+ LR
Sbjct: 288 LRRHVTAHDETLNHLADAVAIFGPSRKLAFHNTAFQTLFNLDPAWLNERPTHGELLDRLR 347

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
               LPE +++  WK      Y+++E   D +W LP+G+TL V+   +P GG + +F ++
Sbjct: 348 QRRMLPEVIDYAGWKAQELEFYEATEAAPDDSWSLPDGRTLRVVRQPHPLGGILLIFSDI 407

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T ++ L +++N  ++VQ  T+D L++ VAVFG DGR++L N AF + W     RL     
Sbjct: 408 TGELSLRSRFNAQLQVQTATLDKLNDAVAVFGSDGRLRLHNEAFETFWAVSAERLEAAGD 467

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQT 538
              +A  C     ++  W    A +   D E R ++QG        +  +   PLP+  T
Sbjct: 468 FDAVAELCKVALPDAALWLGLKARVADPDPESRVAVQGEGRTTDGRIAAWQTRPLPDGAT 527

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F +VT     E+AL ++  AL+++  +K  FV  VSYELR+PLT I+G+++LL++  
Sbjct: 528 LVAFSDVTARRELEQALAQREAALKESQALKREFVGSVSYELRTPLTTIVGYSELLES-- 585

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L  L  +  Q+   I  ++  L   ++D+LD+A +DAG M+L+   + + DL  E  +  
Sbjct: 586 LEGLPERSRQHAGAIRIAAGQLARSIDDVLDMAQIDAGEMELSVGDVRIRDLFAEAVERH 645

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++      +K +    L    AD +RL+Q    +L NA    S+G  V LKA  +  +
Sbjct: 646 RPRIEGRGATLKAMVPTDLPPVRADARRLMQAVDHLLENATRSVSEGGAVTLKAELNGTE 705

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V++ G  IP  +   VF+RFV      +R G G+GL++V++ + LHGG   + S
Sbjct: 706 VRIRVEDTGRGIPYHLQALVFDRFVKR----ERGGPGVGLALVKALVELHGGWAEVES 759


>gi|288959556|ref|YP_003449897.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288911864|dbj|BAI73353.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 773

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 205/704 (29%), Positives = 334/704 (47%), Gaps = 86/704 (12%)

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           L+ A  +LR++G  F   A T           V+G+ A  R L L G   +  +T  +C 
Sbjct: 76  LAPALSRLRRDGTPFRCEATTS----------VTGTAATGRRLVLTGRRGQSGDT--RCD 123

Query: 187 --------------------------KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
                                        + ++  + + D+L   VW RD++  + W N 
Sbjct: 124 VVWIEDVTAASDAARDASLRQEQATGAARSRLAELQAMADALPVPVWMRDRSLRLSWCNR 183

Query: 221 SYKKNTETE-GIVFQKAIGESRKLFK--EEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
           +Y    + + G V    + E R+L      + +R  S    + +    V   E    +  
Sbjct: 184 AYASAVDGDAGTV----VAEGRELTAAGPALAERARSGGFAQSDRAPVVIGTERRLLEVT 239

Query: 278 KIVRVLNSFGEA---GIAIDVS--KEIT--VNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
           +    L   G     G A+D++  +E+   ++  LT   E+L  L  AIAIF  +  L F
Sbjct: 240 EAPLPLTDGGGTLVVGYALDLTPLEELRGELDRHLTAHAEVLERLGTAIAIFGPDTRLTF 299

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHK 389
            N+++  LW++D A+L   P+N ELLE LR+  +LPE  +++T+K    + Y    E  +
Sbjct: 300 FNQAYARLWDLDEAWLRGEPTNAELLEELRARRRLPEYADYQTFKRERLTRYTHLVEPVE 359

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           +  HLP+G TL  +   +P+GG I + E++T  + LE+ YNTL+ VQ ET+D+L+EG+AV
Sbjct: 360 EMMHLPDGTTLRHLAAPHPQGGLITILEDVTNTLALESSYNTLMAVQQETLDNLAEGIAV 419

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI------------AATCSRYYNESDG- 496
           FG DGR+KLSNPAF  LW+  +  L    HI ++            A   S    +  G 
Sbjct: 420 FGGDGRLKLSNPAFSRLWELADGELHGEPHIADVIERMRPLLEMPPADKSSEKGPDRPGE 479

Query: 497 ---WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
              W+     +     ER    G +E    SV+E+S +PLP+   + ++++VTD  R E 
Sbjct: 480 TATWEALKEELIGATLERSVRSGRVERSDGSVVEFSTLPLPDGAVLNSYLDVTDGARLET 539

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL   N AL  AD++K+ F+ +VS+ LR+PL  IIGF ++L     G +N +Q +YV  I
Sbjct: 540 ALRASNAALEAADQLKSEFIANVSHHLRTPLNGIIGFAEVLANQYFGEMNQRQMEYVRSI 599

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L++D++DL ++ AG+ KL    + L DLL  V            +R++V++
Sbjct: 600 LAAGERLLELIDDVVDLTSLGAGVTKLERGAVNLPDLLESVAGLTRDWARREGLRLEVVA 659

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              LG    D +RL Q    ++  A+        + L   R NG    SV  +G++ P+ 
Sbjct: 660 PEALGQMEGDGKRLKQALFTLVVGAIRNPPPDRRIRLAGERLNGSITLSV--SGAASPDA 717

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +                   LG+S+  + + LHGG + +  +
Sbjct: 718 DPQGA---------------AALGVSLARNVVELHGGRLELDET 746


>gi|83594772|ref|YP_428524.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577686|gb|ABC24237.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 801

 Score =  293 bits (751), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 180/515 (34%), Positives = 265/515 (51%), Gaps = 24/515 (4%)

Query: 290 GIAIDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           GIA D++    V  +L        E+L  L  AIAIF  +  L FHN +F  LW ++  +
Sbjct: 295 GIAQDITPIEEVESRLERETEAHAEVLERLGSAIAIFGGDTRLSFHNAAFASLWGLESDW 354

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIV 404
           L   PS  + LE  R   +LPE  ++  +K      + K     +D  HLP+G TL  ++
Sbjct: 355 LNGEPSYGDFLERQRENRRLPEVADFPAYKAGELGYFTKLLRPREDILHLPDGATLRRVI 414

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             +P GG I  FE++T  + LE  YN L  VQ ETIDHL E VAVFG +GR++LSNPAF 
Sbjct: 415 APHPLGGLITTFEDVTDSLALERSYNQLTAVQRETIDHLHEAVAVFGANGRLRLSNPAFS 474

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNES---DG-WDLFAAIITSFDDERKSLQGTLEL 520
            LW         GT     AA        +   DG W+ F   +   D+      G L  
Sbjct: 475 QLWS------GAGTDSEPQAAALLDDMEAAMIADGAWETFRRRLCVRDESAGPRNGRLVR 528

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                L+Y+ +PLP+   +L+ +++TD VR E+AL+E+ EALR AD +K+ F+ +VSYEL
Sbjct: 529 RDGRHLDYATVPLPDGGLLLSILDITDRVRVEQALSERTEALRAADMMKSEFIANVSYEL 588

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT I GF+++L  +  G LN++Q +Y E I+ +S  ++ L+++I DL ++ AG + L
Sbjct: 589 RTPLTTISGFSEILSGAYYGELNTRQREYAEVITETSRQVVRLIDEITDLVSMQAGKLAL 648

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 ++  L  V            + +        G  VAD  R+ QI   ++SNA+ 
Sbjct: 649 ELDAFDIHAALAAVLALGRESARRRGVTLNFDCPPDAGWMVADETRIKQILFHLMSNAIT 708

Query: 701 FSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVG 755
            +  G  V L   R    D G  +F+V + G  + E +    F  F     +G R  G G
Sbjct: 709 GTDAGGQVTLAVQREDTPDGGTMVFTVADTGRGMDEILQTRAFESFA----KGPRADGAG 764

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL++V  F+ LHGG V + S     TT+  RIP+
Sbjct: 765 LGLALVRRFVELHGGAVDLVSVPGEGTTVTVRIPT 799



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 5/150 (3%)

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           RG T+ + +++T   ++E++     +   E ++ L   +A+FG D R+   N AF SLW 
Sbjct: 290 RGHTVGIAQDITPIEEVESRLERETEAHAEVLERLGSAIAIFGGDTRLSFHNAAFASLWG 349

Query: 469 TEENRL----SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            E + L    S G  +        R    +D     A  +  F    +  +  L L   +
Sbjct: 350 LESDWLNGEPSYGDFLER-QRENRRLPEVADFPAYKAGELGYFTKLLRPREDILHLPDGA 408

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            L   I P P    + TF +VTDS+  ER+
Sbjct: 409 TLRRVIAPHPLGGLITTFEDVTDSLALERS 438


>gi|329847598|ref|ZP_08262626.1| sensor protein divL [Asticcacaulis biprosthecum C19]
 gi|328842661|gb|EGF92230.1| sensor protein divL [Asticcacaulis biprosthecum C19]
          Length = 805

 Score =  293 bits (750), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 184/652 (28%), Positives = 335/652 (51%), Gaps = 44/652 (6%)

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           I+G+ SG+ A++R L++ G    L+               F  + + L    W   + G 
Sbjct: 151 IDGKASGATAWIR-LAIAGAKQSLSS------------GPFAQMAEHLPAPCWICARDGR 197

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE---- 270
           ++WAN ++ +  E + +  ++A+ +   L +        S+ AL  +  E+ +  E    
Sbjct: 198 MVWANEAWLRAAEVQDL--EQALRDGATLDR--------SADALVSDATESRARREGFRW 247

Query: 271 ---HGNNKSYKIV-RVLNSFGEAGIAIDV-----SKEITVNDQLTHTYEILHNLTVAIAI 321
               G  ++++++   LN       A+DV     S+E        H  E L +L  A+AI
Sbjct: 248 LTISGQRRAFQVIAEPLNDAYTCAYAVDVTEAEDSREALKRHAKAHD-ETLDSLEDAVAI 306

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           F   R L FHNR+F +LWE++ A+LA  P++ E L+ LR   +LPE  ++  +K      
Sbjct: 307 FGPERQLTFHNRAFEKLWELEPAWLAERPTHAEWLDRLRQKRRLPETSDYAGFKGRESEF 366

Query: 382 YKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
           +  + T  D  W LP+G++L V+   +P GG + +F + T ++ L+ ++N L++VQ  T+
Sbjct: 367 FGLTHTADDEMWSLPDGRSLRVVRQPHPLGGLLILFSDKTGELKLKAQFNALIQVQKSTL 426

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D L+E V+V+G DGR++L N AF   W    + ++      +IA  C    ++   W   
Sbjct: 427 DQLNEAVSVYGSDGRLRLRNQAFDKFWHLRSDDIAAVMDFAHIAELCLPLVHDRGFWAEL 486

Query: 501 AAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A +T  D   R   QG ++L    + ++   PLP+  T++ F ++T +   E+A+ +++
Sbjct: 487 KARVTDTDPLARAPQQGEIKLSDSRLAQWRTQPLPDGATLVVFSDITATRSLEKAIEDRD 546

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL ++  +K  FV +VSYELR+PLT I+G+ DLL    +G  ++KQ  Y++ I  ++  
Sbjct: 547 EALNESVRLKREFVANVSYELRTPLTTIVGYADLLHAQNIGH-DTKQKAYLDSIQTAAQE 605

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L   ++D+LD+A +DAG M ++ + I L D++ E     A      ++        + G 
Sbjct: 606 LARSIDDVLDMAQIDAGEMSVSTADIRLLDIVAEAAARQADAFKSKSVHFDYTGVRESGL 665

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D +RL Q    +L +A+  ++   +V L A++D  + +  V  +G  IP  +   +F
Sbjct: 666 VHVDGRRLGQCLDHLLGHAVRNATAAGSVSLNASKDGDNLLLEVAYSGRGIPYHVQAHIF 725

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +R++      +R G GLGL++V++ + LHGG +++ S      +   R+P +
Sbjct: 726 DRYIGR----ERGGPGLGLALVKALVELHGGWITLESEPNEGASFKIRLPKQ 773


>gi|167648789|ref|YP_001686452.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
 gi|167351219|gb|ABZ73954.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
          Length = 770

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 154/485 (31%), Positives = 264/485 (54%), Gaps = 8/485 (1%)

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           E L+++  A+AIF Q+R L FHN +F  LW ++ A+LA  P++ E+L+ LR   +LPE +
Sbjct: 281 ETLNHIADAVAIFSQSRRLAFHNTAFANLWGLEPAWLADRPTHGEVLDRLRQRRRLPETV 340

Query: 370 NWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
           ++  WK    + Y+      D  W LP+G+TL V+   +P GG + ++ ++T ++ L+ +
Sbjct: 341 DYAKWKAAELARYEDLGPQADEMWDLPDGRTLRVVRQPHPLGGMLLLYSDITGELRLKAQ 400

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           YN L++VQ  T+D L++ VAVFG DGR++L N AF + W      L        +   C 
Sbjct: 401 YNALIQVQQATLDKLNDAVAVFGSDGRLRLHNEAFETFWNVSAQALEAAVDFEGVVELCV 460

Query: 489 RYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
              ++   W      +   D + R    G      + ++ Y   PLP+  T++ F +VTD
Sbjct: 461 PRLHDLSFWRELKGRVADPDPQMRAPTSGETRTSDNRIIVYQSRPLPDGATLIAFADVTD 520

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +   + AL ++++AL +A+ +K  FV +VSYELR+PLT IIG+++LL+ +    L+ +  
Sbjct: 521 TRDLQAALADRSQALTEAERLKRDFVGNVSYELRTPLTTIIGYSELLERAD--GLSERSR 578

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +V  + +++T L   ++D+LD+A +DAG M L    I +  LL++ ++          +
Sbjct: 579 GHVASVRSAATQLARSIDDVLDMAQIDAGEMALEIGDIRVAGLLSDAQERSLKIAQIGGV 638

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V  D  +G    D++RL QI   ++ NA+  +     V L A R  G+    V + G
Sbjct: 639 TLSVECDKDVGLIRGDQKRLSQILDHLIENALRQTPPDGVVTLSARRALGEVRLDVSDTG 698

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +P  +   +F+RFV       R G GLGL++V++ + LHGG V++ S     +T  C 
Sbjct: 699 RGVPFHVQAHIFDRFVGR----DRGGPGLGLALVKALVELHGGWVALESEPGAGSTFTCH 754

Query: 788 IPSKE 792
           +P  +
Sbjct: 755 LPETQ 759


>gi|197103684|ref|YP_002129061.1| tyrosine kinase DivL [Phenylobacterium zucineum HLK1]
 gi|196477104|gb|ACG76632.1| tyrosine kinase DivL [Phenylobacterium zucineum HLK1]
          Length = 771

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 191/663 (28%), Positives = 321/663 (48%), Gaps = 32/663 (4%)

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           R E  +F++  E      + +EGR +G+ A+LR   L G+  E A      +        
Sbjct: 119 RGEACAFEVQGEA---GVVTVEGRAAGALAWLR---LSGMLGEDAGLPTAPR-------- 164

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
           F     +     W     G  +W N ++ +    E +      G +     + +     S
Sbjct: 165 FAAFLHTRSCPAWIAAADGSPVWVNAAWLRAVGAETLDEAARRGAAFDRGADSVA----S 220

Query: 255 SSALEKNFCETVSTLE-HGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTYEI- 311
            +A      E V  L   G  +++ IV + L   G A    DV++   + +QL    E  
Sbjct: 221 EAANLGQRREAVRWLAFDGRRRAFHIVAQPLEGGGVAVWTDDVTEVEELREQLKRNIEAH 280

Query: 312 ---LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
              L+ +  A+AIF + + L FHN +F ELW I+ A+L   P++ E+L+ LR   +LPE 
Sbjct: 281 DQTLNRIDDAVAIFGEGKRLIFHNTAFAELWGIEPAWLEERPTHGEVLDRLRQRRRLPET 340

Query: 369 LNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
            ++  WK      Y K      D W LP+G+TL V+   +P GG + +F ++T ++ L+ 
Sbjct: 341 ADYAKWKAAELDRYEKLGAEPDDLWSLPDGRTLRVVRQPHPMGGMLVLFADITGELKLKA 400

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +YN L++VQ  T+D LS+ VAVFG DGR++L N +F   W    ++L        +   C
Sbjct: 401 QYNALIQVQQATLDKLSDAVAVFGSDGRLRLHNESFERFWGIGHDQLE-AADFEAVVQLC 459

Query: 488 SRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
               ++   W      +   D   R  + G      D ++EY   PLP+  T++ F +VT
Sbjct: 460 VPKLHDLGFWRELKGRVGDPDPGARTPMTGEARTSDDRIVEYRSRPLPDGATLIAFTDVT 519

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D+ R E AL ++  AL +A+ +K  FV +VSYELR+PLT IIG+++LL+ S   +L  + 
Sbjct: 520 DARRLESALADREAALSEAERLKRDFVGNVSYELRTPLTTIIGYSELLEHSG-DALPERA 578

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +   + +++T L   ++D+LD+A +DA  M L+ + + + +L+  V            
Sbjct: 579 RAHAASVKSAATQLARSIDDVLDMAQIDADEMALDLADVNVAELMIGVAGRWLKPAEAAR 638

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + + +     +G    D +RL QI   ++ NA+  +  G T+ L A +  G+    V + 
Sbjct: 639 VSLVIERPDDIGLIRGDAKRLAQILDHLVENALTQTPAGGTITLAARKALGEIQLQVSDT 698

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  IP  +   +F+RF+      +R G GLGL++V++   LHGG V++ S         C
Sbjct: 699 GRGIPFHVQAHIFDRFIGR----ERGGPGLGLALVKALTELHGGWVALESEPGAGARFTC 754

Query: 787 RIP 789
            +P
Sbjct: 755 HLP 757


>gi|315497262|ref|YP_004086066.1| pas/pac sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315415274|gb|ADU11915.1| PAS/PAC sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 857

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 191/689 (27%), Positives = 345/689 (50%), Gaps = 50/689 (7%)

Query: 128 SKATEKLRKEGQS--FDLVAETQ--------NDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
           ++A ++L  EGQ   F++  E          +   + +EGR +G+ A++R+     I SE
Sbjct: 112 AEALKRLIAEGQPCRFEVFTEAPRSLMGSKTSGLTLLVEGRATGATAWVRL----AIASE 167

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKA 236
              T+L           F  + D +    W  RD  G ++WAN ++ K  + + +   + 
Sbjct: 168 --HTSLSSGP-------FARMADLIPAPCWVVRD--GQLVWANAAWLKAVDAQNVEQAR- 215

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGI---A 292
              S +L  +   + ++  +A +    E    L  HG  +++++V      G+A +   A
Sbjct: 216 ---SEQLGLDRSAEALVVEAAEQHVRREGFRWLTIHGQRRAFQVV--AEPLGDAYVCAYA 270

Query: 293 IDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +DV++     + L        + L +L  A+AIF   + L FHNR+F  LW+++ A+LA 
Sbjct: 271 LDVTESEESREALKRHAKAHDDTLDHLEDAVAIFGPEKRLTFHNRAFEILWDLEPAWLAE 330

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSN 407
            P++ ELL+ LR   KLPE  ++ TWK      Y  SE   D  W LPNG++L V+   +
Sbjct: 331 RPTHGELLDRLRQKRKLPETSDFVTWKAQELEFYGLSEAAPDEMWSLPNGRSLRVVRQPH 390

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           P GG + +F + T ++ L+ ++N+L++VQ  T+D L++ V+VFG DGR++L N AF + W
Sbjct: 391 PLGGLLLLFSDKTGELTLKAQFNSLIQVQRATLDQLTDAVSVFGSDGRLRLRNAAFDAFW 450

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ-GTLELLSDSVL 526
               + L+  +    + A C    ++   W    A +T  D   ++ Q G +      + 
Sbjct: 451 NLSPDDLAVNSDFGQLTALCLPLVHDRGFWAELKARVTDIDPLARAPQLGEVRTSDGRLA 510

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           ++   PLP+  T++ F ++TD    E A+ +++ AL ++  +K  FV +VSYELR+PLT 
Sbjct: 511 QWRTQPLPDGATLVAFSDITDRRALEEAIEQRDVALTESVRLKRDFVANVSYELRTPLTT 570

Query: 587 IIGFTDLLK----TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           I+G+ DLL+     ++      ++  ++  I A+S  L   ++D+LD+A +DAG M L+ 
Sbjct: 571 IVGYADLLQRQANAAEADPAEIRRRGFLNAIQAASQELARSIDDVLDMAQIDAGEMSLSP 630

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S   L+  +       A  +    IR   +         AD+QRL Q+   +L  A+  +
Sbjct: 631 SDFNLSRTVAAALGRQADTLSAKGIRFDYVGLDTRALIRADQQRLGQVLDHLLDYALRNA 690

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           ++   + +++ ++       +   G  IP      +F+RFV      +R G GLGL++V+
Sbjct: 691 AQEGQITIRSRKEGDTLTLEIGYTGRGIPYHTQAHIFDRFVGR----ERGGPGLGLALVK 746

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + + LH G +++ S  +   T    +P +
Sbjct: 747 ALVELHDGWITLESEPQSGATFALHLPHQ 775


>gi|294011631|ref|YP_003545091.1| putative sensor histidine kinase [Sphingobium japonicum UT26S]
 gi|292674961|dbj|BAI96479.1| putative sensor histidine kinase [Sphingobium japonicum UT26S]
          Length = 781

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 188/749 (25%), Positives = 351/749 (46%), Gaps = 38/749 (5%)

Query: 68  QLSKYHSLLTENNCLTIVW--DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYI 125
           +L +  +L+       IV   DG+ E  + + +   +  +P   ++L + +  L+     
Sbjct: 42  KLDRLSALIASAPAAPIVIHSDGRLEAADRLAKWLGKERVPAFVSELTAPDGGLEPDDAT 101

Query: 126 KLSKATEKLRKEGQSFDL-VAETQNDCAIKIEGRVSGSC------AFLRILSLDGIYSEL 178
            L++     ++ G+SF L V    +   + + G  +GS         L I       SE+
Sbjct: 102 ALAQEIAAAQRAGRSFALPVRGVDSSRLLLVRGAPAGSVLAESGGVVLWIFDATDSQSEI 161

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
                + ++L   +     L ++  F +WHR     +   N +Y +  + E    ++ I 
Sbjct: 162 QTLKGRVEQLREALEALAGLVEAAPFPMWHRTADMRLSLVNTAYVRAVDGENA--REVIA 219

Query: 239 ESRKLF--------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSFGEA 289
              +L         +    + +   + +E+    T+     G  ++ ++V V L + G A
Sbjct: 220 NGTELVETVGGLTPQAAAAQTLADGTPVERMVPATID----GERRTIRVVDVPLGAAGVA 275

Query: 290 GIAIDVSK--EITVNDQLTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G A+D ++  +  V  +     +  +L  L+  +A F  +R L+F N+ F+ L+ +D   
Sbjct: 276 GFALDQNELEQARVEHRRLEAAQRDLLDRLSAGVARFGSDRALRFWNQPFMSLFGLDQER 335

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           LA NP  + +L+ +R A +LPE  ++  W+      + S +  ++ W L +G  L V   
Sbjct: 336 LADNPPFERVLDQMREARRLPENRDFPAWRAERRDWFLSPDPREENWLLADGTHLRVYAQ 395

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
             P GG + +FE+ T QV L +  +TL++V+  T D+L E + VF  DGR+ L N  FR+
Sbjct: 396 PLPDGGLLLIFEDRTEQVQLSSARDTLLRVRTATFDNLFESIGVFSSDGRLHLWNSRFRT 455

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +W   E+ L+    I  +  T      +    +L   ++ +   ERK   G +      +
Sbjct: 456 IWDVSEDLLAQHPRIDELMRTVQSRLAKPQQGNLVRELVRAATVERKQRVGHVGFADGRI 515

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E++ IPLP+   + T ++VTDS R E+ L ++N+AL +AD++K +FV ++SYELR+PLT
Sbjct: 516 FEFAAIPLPDGNALFTMLDVTDSRRVEQVLRDRNDALEQADKVKTAFVTNMSYELRTPLT 575

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I GF +++     G L++   +YV+ I  S+  L  L++++LDL   +AG++ +  + +
Sbjct: 576 TIAGFAEMMSAGYAGELSASAKEYVDGILQSTNRLSMLIDNVLDLTQGEAGMLPVEKAPV 635

Query: 646 VLNDLLNEVKQSIAT---KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              DL  E + ++A          I + +     LG+   D++R+ Q    +L NA+ + 
Sbjct: 636 ---DLAVEARDAVARIKGDATAKGIDLALSLQASLGTIQGDKRRIGQALDHLLENAVRYC 692

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG--VGLGLSI 760
           S+G  V+L       +    V +NG  I      ++F+   S+     R G   G+GL +
Sbjct: 693 SRGGRVLLHGDGTTDNARLVVSDNGPGINAKRQATIFD--ASSRTEQARNGGKAGIGLPL 750

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
                  HGG + + S     T +   +P
Sbjct: 751 ARQLAQAHGGTLQLVSEPGQGTMVVIELP 779


>gi|87200018|ref|YP_497275.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135699|gb|ABD26441.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 782

 Score =  260 bits (665), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 195/740 (26%), Positives = 346/740 (46%), Gaps = 44/740 (5%)

Query: 68  QLSKYHSLLTENNCLTIV--WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYI 125
           Q  +   ++ E+  L ++   DG+ E P  +        +P   ++L + ++ L      
Sbjct: 43  QARRLARMVDESPALPLLVRADGRIEGPARLALWLGFEAMPGYLSELDAGDHGLDEVELA 102

Query: 126 KLSKATEKLRKEGQSFDLV----AETQNDCAIK--IEGRVS-GSCAFLRILSLDGIYSEL 178
           +L  A  + +K G  F +       +++ CA     + +VS G  A +    +     EL
Sbjct: 103 RLGDAVRRAQKTGTPFRMALTPRGGSRSLCAQGHLADPQVSPGGAALVWFFDVSESEEEL 162

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE--------G 230
                + +K  +  +    L ++    +W R     +   N +Y      E        G
Sbjct: 163 VALRAETRKAKSDFAGLSGLIEAAPLPMWFRGPDLRLRLVNSAYVAAVGAESADQVIAQG 222

Query: 231 I-VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSFGE 288
           I + +   G S      +   R +S   +E++   T+     G  ++ ++  + L   G 
Sbjct: 223 IELIEPVEGLSAAQVARQAHSRKVS---IERSLLATI----KGQRRAVRVTDLPLGDEGV 275

Query: 289 AGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           AG  +D+ +   +  Q         E+L  L+  IA FD+ R L F N+ F+ ++ +  A
Sbjct: 276 AGYVVDIEEMEELIRQFRRFREAQREMLDTLSAGIAQFDEKRNLVFANQPFLRIFSVPQA 335

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           ++   P  D +L+ +R A +LPE  ++  W+      + + E  ++ WHL +G  L V+ 
Sbjct: 336 WVVDTPPFDRVLDRMRDAGRLPEVRDFPEWRRERQGWFLAREPIEEPWHLSDGTHLRVVG 395

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
              P GG + +FE+ T Q+ L    +TL++ +  T D+L E +AVF PDGR++L N  F 
Sbjct: 396 QPMPDGGLLMIFEDRTEQLQLSATRDTLLRTRTATFDNLFESLAVFAPDGRLQLWNRRFA 455

Query: 465 SLWKTEENRLSPGTHIR------NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           + W  +E  L+  TH R       IA    R           A +I     ERK   G L
Sbjct: 456 ADWGLDEEFLA--THPRADVLLSRIADQLKRPAQVGT----VAQVIQGATLERKQRSGRL 509

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L     L  + +PLP+   +LT +++TDS +AE AL E+N AL +AD +K  F+ ++SY
Sbjct: 510 ALADGRHLALAGVPLPDGNGLLTVLDITDSQKAEAALRERNAALVEADAVKTRFIANMSY 569

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E R+PLT+I GF +LL++   G L  +Q++YVE I  S   L   + ++LDL+  +AG +
Sbjct: 570 EFRTPLTSIGGFAELLQSGIAGDLTEQQNEYVEAILTSVERLGEQIENVLDLSQSEAGTL 629

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L    + +  LL +V      ++    I + +  D   G    D +RL + F +++ NA
Sbjct: 630 PLAQEPVEIFPLLTDVVTERTERLAGAGITLDLRGDRSAGMVTGDARRLRRAFGQLIDNA 689

Query: 699 MDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGL 756
           +  + +G  ++++A+R  G  +   V +NG  + P  + +++    VS   +   R  GL
Sbjct: 690 IAATPEGGRILVEASRKKGGALQVVVSDNGRGMEPAVLARALDGLKVSADGKAVERRQGL 749

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL +V   +  HGG++ + S
Sbjct: 750 GLPLVRQLVEAHGGNLELMS 769


>gi|307292814|ref|ZP_07572660.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|306880880|gb|EFN12096.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 781

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 167/632 (26%), Positives = 306/632 (48%), Gaps = 29/632 (4%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           SE+     K ++L   +     L ++  F +WHR     +   N +Y +  + E    ++
Sbjct: 159 SEIQSLKGKVEQLREALEAMAGLVEAAPFPMWHRTADMRLSLVNTAYVRAVDGESA--RE 216

Query: 236 AIGESRKLF--------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSF 286
            I    +L         +    + +   + +E+    T+     G  ++ ++V V L + 
Sbjct: 217 VIAHGTELVETVGGLTPQAAAAQTLTDGAPVERMVPATID----GERRTIRVVDVPLGAA 272

Query: 287 GEAGIAIDVSK--EITVNDQLTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G AG A+D ++  +  V  +     +  +L  L+  +A F  +R L+F N+ F+ L+ +D
Sbjct: 273 GVAGFAMDQNELEQARVEHRRLEAAQRDLLDRLSAGVARFGSDRALRFWNQPFMSLFGLD 332

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              L+ NP  + +L+ +R A +LPE  ++  W+      + S +  ++ W L +G  L V
Sbjct: 333 QERLSDNPPFERVLDQMREARRLPENRDFPAWRAERRDWFLSPDPREENWLLADGTHLRV 392

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                P GG + +FE+ T QV L +  +TL++V+  T D+L E + VF  DGR+ L N  
Sbjct: 393 YAQPLPDGGLLLIFEDRTEQVQLSSARDTLLRVRTATFDNLFESIGVFSSDGRLHLWNSR 452

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           FR++W   E+ L+    I  +  T      +    +L   ++ +   ERK   G +    
Sbjct: 453 FRTIWDVSEDLLAQHPRIDELMRTVQSRLAKPQQGNLVRELVRAATVERKQRVGHVGFAD 512

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             + E++ IPLP+   + T ++VTDS R E+ L ++N+AL +AD++K +FV ++SYELR+
Sbjct: 513 GRIFEFAAIPLPDGNALFTMLDVTDSRRVEQVLRDRNDALEQADKVKTAFVTNMSYELRT 572

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT I GF +++     G L++   +YV+ I  S+  L  L++++LDL   +AG++ +  
Sbjct: 573 PLTTIAGFAEMMSAGYAGELSTSAKEYVDGILQSTNRLSMLIDNVLDLTQGEAGMLPVEK 632

Query: 643 STIVLNDLLNEVKQSIAT---KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           + +   DL  E + ++A          I + +     LG+   D++R+ Q    +L NA+
Sbjct: 633 APV---DLAAEARDAVARIKGDATAKGIDLALSLQASLGTIQGDKRRIGQALDHLLENAV 689

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG--VGLG 757
            + S+G  V+L       +    V +NG  I      ++F+   S+     R G   G+G
Sbjct: 690 RYCSRGGRVLLHGDGTTDNARLVVSDNGPGIDAKRQATIFD--ASSRTEQARNGGKAGIG 747

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L +       HGG + + S     T +   +P
Sbjct: 748 LPLARQLAQAHGGTLQLVSEPGQGTMVVIELP 779


>gi|94496374|ref|ZP_01302951.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
 gi|94424120|gb|EAT09144.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
          Length = 782

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 176/733 (24%), Positives = 335/733 (45%), Gaps = 46/733 (6%)

Query: 87  DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146
           DG+ E  + + +   R   P   ++L + +  ++      L++     ++ G+SF L   
Sbjct: 64  DGRLEAADRLAKWLGRTRAPNFLSELTAEDGGIEPEDAHALAQVIAAAQRAGKSFALPVR 123

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIY----------SELAETTLKCKKLSNHISVFK 196
             +   + +   V G+ A   +    G+           +E+     +  +L + +    
Sbjct: 124 GIDSTRLLL---VRGAPAGPELAESGGVLLWIFDATDSQAEIQSLRSQVAQLRDALEALA 180

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTE--------TEGIVFQKAIG-------ESR 241
            L ++  F +WHR     +   N +Y +  +        T+GI   +++G        + 
Sbjct: 181 GLVEAAPFPMWHRTPDLRLSLVNSAYVRAVDAQDAADVITQGIELVESVGGVPPEAAAAD 240

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSFGEAGIAIDVSK--E 298
            + ++++ +RM+ ++               G  +  ++V V L   G AG A+D  +  +
Sbjct: 241 AMARDQLVERMVPATI-------------DGERRMMRVVDVPLGDAGIAGYAVDQHELEQ 287

Query: 299 ITVNDQLTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             V  +     +  +L  L+  +A F  +R L+F N+ F+ L+ +    LA  P  + +L
Sbjct: 288 ARVEGRRLEAAQRDLLDRLSAGVARFGPDRMLRFWNQPFMSLFGLRQEALADAPVFERVL 347

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           + +R A +LPE  ++  W+      + S E  ++ W L +G  L V     P GG + +F
Sbjct: 348 DQMRDARRLPEHRDFPAWRSERRDWFLSPEPVEENWLLQDGTHLRVYAQPLPDGGLLLIF 407

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E+ T QV L +  +TL++V+  T D+L E + VF  DGR+++ N  FR++W   E  L+ 
Sbjct: 408 EDRTEQVQLSSARDTLLRVRTATFDNLFESIGVFAADGRLQMWNSRFRTIWGASEELLAT 467

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              I ++         + +  +L   ++ +   ERK   G +      + E++ IPLP+ 
Sbjct: 468 HPRIDDLMRDVQSRLAKPEQGNLVRELVRAATVERKQRMGHVGFADGRIFEFAAIPLPDG 527

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             + T ++VTDS R E+ L ++NEAL +AD+IK +FV ++SYELR+PLT I GF +++  
Sbjct: 528 NALFTMLDVTDSRRVEQVLRDRNEALEQADKIKTAFVTNMSYELRTPLTTIAGFAEMMSA 587

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L+     YV  I  S+  L  L++++LDL   +AG + +    + L DL     +
Sbjct: 588 GYAGELSEPAKDYVSGILQSTGRLSMLIDNVLDLTQSEAGTLPIERLPLDLGDLARARVE 647

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  +     + + +     +G    D +R+ Q    +L NA+ + S+G+ ++L      
Sbjct: 648 RLRAEAVAKGMDLALDLTPAVGVVRGDERRIGQCIDHLLENALTYCSRGARILLHGDGTA 707

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 + +NG  IP +  +++F   V           G+GL +    +  HGG + + S
Sbjct: 708 DRARIVISDNGPGIPTERQRAIFEPLVRAEQARSGAKAGMGLPLARQLVQAHGGTLKLVS 767

Query: 777 SDEGVTTINCRIP 789
                T I   +P
Sbjct: 768 KKGQGTMILIELP 780


>gi|326387830|ref|ZP_08209436.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207876|gb|EGD58687.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 785

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/527 (28%), Positives = 263/527 (49%), Gaps = 8/527 (1%)

Query: 266 VSTLEHGNNKSYKIVRV-LNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIA 320
           VS    G  +S +++ + L   G AG A+D+ +   +  Q         ++L  ++  IA
Sbjct: 255 VSATIGGQRRSLRVIDLPLGDDGVAGYAVDIEEMEELTRQFRRFRAAQRQMLDTMSAGIA 314

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
            FD+ R L F N+ F+ L+ I  A++   P  D +L+ +R A +LPE  ++  W+     
Sbjct: 315 QFDERRNLVFVNQPFLRLFNIPQAWVVDTPPFDRVLDRMRDAGRLPEVRDFPEWRRERQG 374

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            + S E  ++ W L +G  L V+    P GG + MFE+ T Q+ L    +TL++ +  T 
Sbjct: 375 WFLSREAREEPWLLSDGTHLRVVAQPMPDGGLLMMFEDRTEQLQLSATRDTLLRSRTATF 434

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D+L E +A FGPD R++L N  F + W  +E  L        + A  +            
Sbjct: 435 DNLFESLAAFGPDSRVQLWNRRFVADWGLDEEFLDSHPRADALLARMAVKLRRPGQVATI 494

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             +I +   ER+   G LEL     L ++ +PLP+   +LT +++TDS +AE  L E+N 
Sbjct: 495 GQVIEAATLERRQQSGRLELADGRYLAFAGVPLPDGNGLLTILDITDSQKAETMLRERNA 554

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL +AD +K  F+ ++SYE R+PLT+I GF ++L++   G L  +  +YV  I  S   L
Sbjct: 555 ALLEADAVKTRFIANMSYEFRTPLTSIGGFAEMLQSGLAGDLPERAKEYVGAILTSVKRL 614

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              +  +LDL+  +AG + +    + +  LL+EV       + E  + + +     +G+ 
Sbjct: 615 GEQIETVLDLSQGEAGTLPIAREAVAIFPLLSEVVHERDEALTEGGLTLDLRGTEAVGTV 674

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSI-PEDMCKSV 738
             D +RL + F  ++ NA+  + +G  ++++   R +      V +NG  + P  + +++
Sbjct: 675 TGDPRRLRRAFGHLVDNAIAATGQGGRILVECTRRPDRKVQVVVSDNGRGMEPAQLARAL 734

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTI 784
               +S+  R   R  GLGL +V   I  HGG + I S   +G + +
Sbjct: 735 EGLAISSDGRSIERRSGLGLPLVRQLIEAHGGSIEIMSEPGQGTSAV 781


>gi|332185686|ref|ZP_08387433.1| his Kinase A domain protein [Sphingomonas sp. S17]
 gi|332014044|gb|EGI56102.1| his Kinase A domain protein [Sphingomonas sp. S17]
          Length = 802

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 156/527 (29%), Positives = 264/527 (50%), Gaps = 8/527 (1%)

Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
           G  ++ +I  V L + G AG A+D+              E    +L  L+ A+A F  +R
Sbjct: 270 GARRALRIFDVPLTTGGIAGFAVDIEDLEQSRAGAKRFAEAQRAMLDRLSAAVAHFGPDR 329

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSS 385
            L F N+ F  ++ +   +LA +P  D +LE +R AN+ PE  ++  WK E I    ++ 
Sbjct: 330 ELVFCNQPFRRMFAMRAEWLADHPEFDRVLERMREANRSPEVRDFPGWKAERIGWFRQAG 389

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              ++ WHLP G  L V+    P GG + +FE+ T +V L +  +TL++V+  T D+L E
Sbjct: 390 GGIEEQWHLPGGTHLRVVAQPLPDGGLLLIFEDRTEEVQLASARDTLLRVRTATFDNLFE 449

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + VF  DGR++L N  FR LW  EE  LS    +   A   +      +   L   ++ 
Sbjct: 450 ALGVFAADGRLQLWNNRFRVLWGLEEEFLSSHPRVDVFADKVAGRLATPNRSALIVDLVR 509

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S   ER+   G + +      E++ +PLP+   ++T +++TDS RAE+AL ++  AL  A
Sbjct: 510 SATIERQQRGGRVAMADGRHYEFAGVPLPDGNALITLLDITDSRRAEQALRDRANALEAA 569

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D++K +FV ++SYELR+PLT+I GF ++L     G L    + YVE I  S+  L  LV+
Sbjct: 570 DKVKTAFVANMSYELRTPLTSISGFAEMLHGGFAGPLPETANSYVEAILESTERLGLLVD 629

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LDL     G  ++    + L  +      +I   +    +   V     +G    DR+
Sbjct: 630 DVLDLTRGGEG-AEIEREDVDLARVARTAADTIRPVVGRRRLDFAVEIQRSVGRVTGDRR 688

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL ++   +L +A++ + +   ++L A  D+G     V ++G  +  +     F+RF   
Sbjct: 689 RLQEVIEHLLRHAVEQTPESGRILLHADGDSGRARIIVSDDGQGMNAEAVAHAFDRFAEP 748

Query: 746 AHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +    R +GLGL + + F+  HGG +++ S     T +   +P +
Sbjct: 749 EIKATGERALGLGLPLAKQFVEAHGGTITLLSEPGQGTLVTVELPRR 795


>gi|260752459|ref|YP_003225352.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551822|gb|ACV74768.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 795

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 185/716 (25%), Positives = 329/716 (45%), Gaps = 40/716 (5%)

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL-VAETQNDCAIKIEGRVSGS 162
           DIP +    + F +WL       L+   + L K G++F   V    +    KI+G++   
Sbjct: 84  DIPSSPD--IFFYSWLDDDSAQILAHHLDILAKTGRAFHCHVYHKMDQRLFKIDGQILQQ 141

Query: 163 CAFLRILSLDGIYSELAET---TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            +   IL +  I  E         + ++    +     LF+ + F +W+R+ A  +   N
Sbjct: 142 SSRDIILWIGDITQEADRQKALAFQAQQSGQALQALSSLFEVMPFPIWYRNAALQLQMVN 201

Query: 220 ISYKKNTE--------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            SY    E        T  I   +  G +  +      ++ + + +++      + +   
Sbjct: 202 QSYVTAVESPSAREVITRNIELTEGKGANNPV---SFAEKALETKSMQSRLSPVILS--- 255

Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNR 326
           G  +  ++  + L +   AG A+DV      +  +   L     IL  L+  +A F+  +
Sbjct: 256 GTRRMMRLTDIPLPTGAVAGYALDVEALEEAKAEMGRFLQAQRHILDQLSAGVAQFNAEQ 315

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385
            L F N  F  L+ +   +L  +P  D +LE +R A +LP   ++  WK      + S +
Sbjct: 316 NLVFANEPFRHLFALKAEWLTDHPEFDRVLERMREAGRLPAAHDFPAWKAERRQWFLSHN 375

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              ++ W L +G  L VI    P GG + +FE+ T QV L + ++ +++V+  + D L E
Sbjct: 376 NALEENWLLMDGSHLRVITQPTPDGGLLLIFEDRTEQVRLTSAHDIMLRVRTASFDKLFE 435

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + VF  DGR+ L N  F  +W+ +E  LS    + ++A         ++     +  I 
Sbjct: 436 AIGVFASDGRLNLWNTRFTDIWQIDEKWLSTHPRVDDLAQKTRLRLENTEHSHYISDAIR 495

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
               ER+   G +  +      +S IPLP+   +LT ++VTDS R ERAL ++NEAL  A
Sbjct: 496 MTMIERQPKHGHIAFIDQQHFNFSTIPLPDGNILLTMLDVTDSWRMERALRDRNEALEAA 555

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  FV ++SYELR+PLT+I GF ++L     G L+   + YV  I  +   L  L++
Sbjct: 556 DRLKTDFVANMSYELRTPLTSISGFAEMLAQGYCGDLSQMANDYVAAILDAVARLSTLID 615

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL  +++G ++L+   + +  LL ++  ++  +  E  I  ++  D  LG   +D Q
Sbjct: 616 DILDLTLLESGNLELDRQNVDIKPLLQDMATALTKRAEELGIHFEIKLDNNLGMIESDPQ 675

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR----------DNGDFIFSVKNNGSSIPEDMC 735
           RL +  + +L  A+  + +G TV L+A+           D+ D + S +    S+   + 
Sbjct: 676 RLSRAINHMLLIALARNPRGGTVQLQASGAGDHIAIVIVDDADILSSSRQG--SVESSLS 733

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+ F       RG +    + + ++  FI LHGG + I S+    T     +P
Sbjct: 734 DPIFDHFSEYGQSVRGGKGSSSIAIPLIRRFIALHGGSIHIDSNHNQKTHFIITLP 789


>gi|241761919|ref|ZP_04760004.1| histidine kinase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373599|gb|EER63171.1| histidine kinase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 795

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 185/716 (25%), Positives = 330/716 (46%), Gaps = 40/716 (5%)

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI-KIEGRVSGS 162
           DIP +    + F +WL       L+   + L K G++F      + D  + KI+G++   
Sbjct: 84  DIPSSPD--IFFYSWLDDDSAQILAHHLDILAKTGRAFHCHVHHKMDQRLFKIDGQILQQ 141

Query: 163 CAFLRILSLDGIYSELAET---TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            +   IL +  I  E         + ++    +     LF+ + F +W+R+ A  +   N
Sbjct: 142 SSRDIILWIGDITQEADRQKALAFQAQQSGQALQALSSLFEVMPFPIWYRNAALQLQMVN 201

Query: 220 ISYKKNTE--------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            SY    E        T  I   +  G +  +      ++ + + +++      + +   
Sbjct: 202 QSYVTAVESPSAREVITRNIELTEGKGANNPV---SFAEKALETKSMQSRLSPVILS--- 255

Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNR 326
           G  +  ++  + L +   AG A+DV      +  +   L     IL  L+  +A F+  +
Sbjct: 256 GTRRMMRLTDIPLPTGAVAGYALDVEALEEAKAEMGRFLQAQRHILDQLSAGVAQFNAEQ 315

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385
            L F N  F  L+ +   +L  +P  D +LE +R A +LP   ++  WK      + S +
Sbjct: 316 NLVFANEPFRHLFALKAEWLTDHPEFDRVLERMREAGRLPAAHDFPAWKAERRQWFLSHN 375

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              ++ W L +G  L VI    P GG + +FE+ T QV L + ++ +++V+  + D L E
Sbjct: 376 NALEENWLLMDGSHLRVITQPTPDGGLLLIFEDRTEQVRLTSAHDIMLRVRTASFDKLFE 435

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + VF  DGR+ L N  F  +W+ +E  LS    + ++A         ++     +  I 
Sbjct: 436 AIGVFASDGRLNLWNTRFTDIWQIDEKWLSTHPRVDDLAQKTRLRLENTEHSHYISDAIR 495

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
               ER+   G +  +      +S IPLP+   +LT ++VTDS R ERAL ++NEAL  A
Sbjct: 496 MTMIERQPKHGHIAFIDQQHFNFSTIPLPDGNILLTMLDVTDSWRMERALRDRNEALEAA 555

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  FV ++SYELR+PLT+I GF ++L     G L+   + YV  I  +   L  L++
Sbjct: 556 DRLKTDFVANMSYELRTPLTSISGFAEMLAQGYCGDLSQMANDYVAAILDAVARLSTLID 615

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL  +++G ++L+   + +  LL ++  ++  +  E  I  ++  D  LG   +D Q
Sbjct: 616 DILDLTLLESGNLELDRQNVDIKPLLQDMATALTKRAEELGIHFEIKLDDNLGMIESDPQ 675

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR----------DNGDFIFSVKNNGSSIPEDMC 735
           RL +  + +L  A+  + +G TV L+A+           D+ D + S +    S+   + 
Sbjct: 676 RLSRAINHMLLIALARNPRGGTVQLQASGAGDHIAIVIVDDADILSSSRQG--SVESSLS 733

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+ F       RG +    + + ++  FI LHGG + I S+    T     +P
Sbjct: 734 DPIFDHFSEYGQSVRGGKGSSSIAIPLIRRFIALHGGSIHIDSNHNQKTHFIITLP 789


>gi|283856402|ref|YP_162837.2| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775402|gb|AAV89726.2| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 795

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 185/716 (25%), Positives = 330/716 (46%), Gaps = 40/716 (5%)

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI-KIEGRVSGS 162
           DIP +    + F +WL       L+   + L K G++F      + D  + KI+G++   
Sbjct: 84  DIPSSPD--IFFYSWLDDDSAQILAHHLDILAKTGRAFHCHVHHKMDQRLFKIDGQILQQ 141

Query: 163 CAFLRILSLDGIYSELAET---TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            +   IL +  I  E         + ++    +     LF+ + F +W+R+ A  +   N
Sbjct: 142 SSRDIILWIGDITQEADRQKALAFQAQQSGQALQALSSLFEVMPFPIWYRNAALQLQMVN 201

Query: 220 ISYKKNTE--------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            SY    E        T  I   +  G +  +      ++ + + +++      + +   
Sbjct: 202 QSYVTAVESPSAREVITRNIELTEGKGANNPV---SFAEKALETKSMQSRLSPVILS--- 255

Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNR 326
           G  +  ++  + L +   AG A+DV      +  +   L     IL  L+  +A F+  +
Sbjct: 256 GTRRMMRLTDIPLPTGAVAGYALDVEALEEAKAEMGRFLQAQRHILDQLSAGVAQFNAEQ 315

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385
            L F N  F  L+ +   +L  +P  D +LE +R A +LP   ++  WK      + S +
Sbjct: 316 NLVFANEPFRHLFALKAEWLTDHPEFDRVLERMREAGRLPAAHDFPAWKAERRQWFLSHN 375

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              ++ W L +G  L VI    P GG + +FE+ T QV L + ++ +++V+  + D L E
Sbjct: 376 NALEENWLLMDGSHLRVITQPTPDGGLLLIFEDRTEQVRLTSAHDIMLRVRTASFDKLFE 435

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + VF  DGR+ L N  F  +W+ +E  LS    + ++A         ++     +  I 
Sbjct: 436 AIGVFASDGRLNLWNTRFTDIWQIDEKWLSTHPRVDDLAEKTRLRLENTEHSHYISDAIR 495

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
               ER+   G +  +      +S IPLP+   +LT ++VTDS R ERAL ++NEAL  A
Sbjct: 496 MTMIERQPKHGHIAFIDQQHFNFSTIPLPDGNILLTMLDVTDSWRMERALRDRNEALEAA 555

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  FV ++SYELR+PLT+I GF ++L     G L+   + YV  I  +   L  L++
Sbjct: 556 DRLKTDFVANMSYELRTPLTSISGFAEMLAQGYCGDLSQMANDYVAAILDAVARLSTLID 615

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL  +++G ++L+   + +  LL ++  ++  +  E  I  ++  D  LG   +D Q
Sbjct: 616 DILDLTLLESGNLELDRQNVDIKPLLQDMATALTKRAEELGIHFEIKLDNNLGMIESDPQ 675

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR----------DNGDFIFSVKNNGSSIPEDMC 735
           RL +  + +L  A+  + +G TV L+A+           D+ D + S +    S+   + 
Sbjct: 676 RLSRAINHMLLIALARNPRGGTVQLQASGAGDHIAIVIVDDADILSSSRQG--SVESSLS 733

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+ F       RG +    + + ++  FI LHGG + I S+    T     +P
Sbjct: 734 DPIFDHFSEYGQSVRGGKGSSSIAIPLIRRFIALHGGSIHIDSNHNQKTHFIITLP 789


>gi|148555587|ref|YP_001263169.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148500777|gb|ABQ69031.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 798

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/619 (24%), Positives = 295/619 (47%), Gaps = 13/619 (2%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           + + +S+ +     L ++  F +WHR     +   N +Y    E E    ++ +    +L
Sbjct: 175 EGQAVSDALDSCLALIEAAPFPMWHRGPDLKLALVNSAYVAAVEGESA--EEVVTGGVEL 232

Query: 244 FKEEIKK--RMISSSALEKNFCET--VSTLEHGNNKSYKIVRV-LNSFGEAGIAIDVSKE 298
                 +  R  + +A +    +T  V     G  ++ +IV V +   G AG A D+   
Sbjct: 233 VDSADGRTPRATALAARDSGRIKTHVVPVTLGGQRRTMRIVDVPMGEHGVAGYAFDIQDL 292

Query: 299 ITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                +L        E+   L+  +A F  +R L F N+ F++ + +   +++ +P  D 
Sbjct: 293 EQTRGELGRFQEAQRELFDRLSAGVAQFGPDRSLIFCNQPFLQFFSLLPEWMSDHPEFDR 352

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           +LE +R   +LPE  ++  WK +  + + + +  ++ W +P GQ L V+    P GG + 
Sbjct: 353 VLERMRETQRLPEARDFPGWKADRRAWFNAVDAVEENWTIPGGQHLRVVAQPLPNGGLLL 412

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            FE+ T QV L +  +TL++V+  T ++L E + VF  DGR+ + N +FR +W   +  L
Sbjct: 413 FFEDRTEQVQLSSARDTLLRVRAATFENLFEAIGVFASDGRLHIWNQSFRDIWGLSDADL 472

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +    +  +    +    +     L   ++     +R++  G + L      +++++PLP
Sbjct: 473 AQNLRVDAMVELVAAKLADPSRAQLLRDLVRIATVDRQARTGRMALADGRYFDFAVVPLP 532

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   + T +++T S   E AL  + +AL +AD++K +FV ++SYELR PLT+I GF +LL
Sbjct: 533 DGNALFTLLDITASRGIEEALRGRADALEEADKLKTAFVANMSYELRVPLTSIAGFAELL 592

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G +     +YV+ I AS   L +LV D+LDL    AG + L+   + +  LL   
Sbjct: 593 DGGYAGEMPPIAQEYVKAILASVGRLGSLVEDVLDLTQGAAGNLPLSEEQVDMGALLTGA 652

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +         +++ V  +  LG    D +RL QI   +L+NA+ ++     V ++   
Sbjct: 653 VAAARPAAEGKPLQLLVDVEPGLGEIRGDPRRLRQIADHLLNNAITYTPPQGRVTIRVHG 712

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           D+   ++ V + G  +       +F+ +  +  ++   ++ +G+GL +    +  HGG +
Sbjct: 713 DDDMIVWVVSDTGPGMDAAQRAGIFDAYPRIDASNDEGKQLIGIGLPLTRQLVEAHGGSI 772

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S     TT+   +P +
Sbjct: 773 ALESEPGRGTTVTIHLPRR 791


>gi|103485658|ref|YP_615219.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis
           alaskensis RB2256]
 gi|98975735|gb|ABF51886.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis
           alaskensis RB2256]
          Length = 787

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 146/517 (28%), Positives = 254/517 (49%), Gaps = 24/517 (4%)

Query: 286 FGEAGIAIDVSK---EITVNDQLTHTY-EILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
            G AG AID+ +   E   + +   T  E+L  L+ A+A F  ++ L F N  F  L+ +
Sbjct: 279 IGIAGYAIDIQELESERGAHRRFVDTQRELLDRLSAAVAQFGPDQGLAFANLPFRRLFGL 338

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           D   +        LL+  R   + PE  ++  W++     +  +E  ++ W L +G  LH
Sbjct: 339 DADDVGEARPFARLLDAWRERGRTPEVRDYPEWRQAHVDWFARAEASEEDWRLRDGTHLH 398

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           V+    P GG + + E+ T QV L    +TL++V+  T D+L E VAVF PDGR+ L N 
Sbjct: 399 VVAQPTPDGGLLLIAEDKTEQVQLAGARDTLLRVRTATFDNLFEAVAVFAPDGRLHLWNQ 458

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            FR LW  +E  L+    +  +    +    + +   +   +I +   ER+   G +   
Sbjct: 459 RFRRLWGVDEPTLAAHPRVDVLMGGLADRLAKPNQISVVQEVIRAATLERQQRVGEIRFA 518

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                +++ IPLP+   +L  +++T S + E AL E+NEAL  AD+ K +F+  +SYELR
Sbjct: 519 DGRHFDFASIPLPDGNALLIMLDITASRKMEGALRERNEALEAADKAKTAFLSRMSYELR 578

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT+I GF ++L+    G L  +Q  YV+ I  S  +L   ++++LDLA  +AG + + 
Sbjct: 579 TPLTSIGGFGEMLQAGYAGKLGDQQRAYVDAIMDSVAVLGRQIDNVLDLAQGEAGTLAIE 638

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAM 699
            + + +  LL +      T+   +  +++++ +    LG+   D  RL ++ + +L NA+
Sbjct: 639 RAPVDVRALLEKALDD--TRPFADAEKVELVGNIAADLGTIEGDAPRLSRLVAGLLDNAV 696

Query: 700 DFSSK----GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV- 754
            F++        V+L A  D       V +NG  +PE           +   +GQ+ G  
Sbjct: 697 RFTAPARKSAGRVLLHADGDKRGIDIIVSDNGPGMPE---------AAAAVAKGQQAGTD 747

Query: 755 --GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G+GL++    +  HGG + + S     T +   +P
Sbjct: 748 TGGIGLALARQLVAAHGGTMEVVSEAGQGTLVRVSLP 784


>gi|46201674|ref|ZP_00208203.1| COG2202: FOG: PAS/PAC domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 648

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 194/338 (57%), Gaps = 15/338 (4%)

Query: 289 AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           AG A+D+++    ++ +    +   ++L +L  AIAIF  +  L F N +F  LW ++  
Sbjct: 306 AGYALDLTRIEDLQVELARHASAHAQVLEHLATAIAIFSTDTRLTFFNTAFTRLWRLEAE 365

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKEN----IFSVYKSSETHKDTWHLPNGQTL 400
           +L   P+   +L+ LR    LPE  +++ +KE+      S+  ++ET     HLP+G+TL
Sbjct: 366 WLQAQPTYGAVLDSLRERRLLPEVADYRAYKEDELKRFISLIDAAET---LLHLPDGRTL 422

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             ++ ++P GG I+ +E++T  + LE  +NT + VQ ET+DHL EGVAVF  DGR++L N
Sbjct: 423 RRMIAAHPYGGLIFTYEDVTDTLALERSFNTALAVQRETLDHLHEGVAVFRGDGRLRLFN 482

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDDERKSLQG 516
           PA+  +W      L    H+  +      Y+      +  W      + +  + R    G
Sbjct: 483 PAYARIWNLPVTLLETEPHLNELVEAHRPYFEGGAERASVWPEVRERLVALFNTRAPQSG 542

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +E L DS+++++ +PLP+   +LT+++VTDS R ERAL E+NEAL  AD +K+ F+ +V
Sbjct: 543 RVERLDDSIVDFASVPLPDGAMLLTWLDVTDSARVERALRERNEALAAADLLKSEFIANV 602

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           S E+R PLT +IGF+++L     G LN +Q +Y   I+
Sbjct: 603 SAEVRKPLTTVIGFSEMLAAEYFGKLNKRQHEYARGIT 640


>gi|85373836|ref|YP_457898.1| two-component signal transduction histidine kinase [Erythrobacter
           litoralis HTCC2594]
 gi|84786919|gb|ABC63101.1| two-component signal transduction histidine kinase [Erythrobacter
           litoralis HTCC2594]
          Length = 780

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 185/733 (25%), Positives = 334/733 (45%), Gaps = 56/733 (7%)

Query: 86  WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL-- 143
           W G D  P+ + +L         D D    +  L      +LS+   + +K    F +  
Sbjct: 75  WLGFDALPQFLSEL--------ADAD----DRGLTKAQLSELSEKVRRAQKSAAPFRMNI 122

Query: 144 -VAETQNDCAIK---IEGRVS-GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
            V  +Q   A++    + +VS G  A + +       +EL+    +  +     +    L
Sbjct: 123 TVPGSQRSLALRGTLADPQVSPGGAALVWVFDFSESATELSRMREESARAKGDFAALVGL 182

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI---KKRMISS 255
            ++    +W R     +   N +Y    E  G    + + E +    E +       ++ 
Sbjct: 183 IEAAPMPMWFRGTDTRLRLVNSAY---VEAVGAESAEGVVEGQVELIESVDGLSAAQVAG 239

Query: 256 SALE-KNFCETVSTLEHGNNKSYKIVRV----LNSFGEAGIAIDVSKEITVNDQLTHTYE 310
            A++ K   E +     G  +  + +RV    L   G AG A+D+ +E+    +    Y 
Sbjct: 240 QAVQHKQSVERIVQATIGGER--RALRVSDLPLGEEGVAGYAVDI-QEMEEQARAHRAYA 296

Query: 311 -----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +L  L+V +A FD  R L F N+ F  ++ + L  LA     + LL   R A + 
Sbjct: 297 KAQRNMLDRLSVGVAQFDAERKLTFANQPFRRIFNMRLGGLADGLPFERLLSEARDAGRT 356

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
           PE  ++  W++     + S ET ++ W L +G  L ++    P GG   + E+ T Q+ L
Sbjct: 357 PEVRDFPAWRQEHVEWFASGETQEEAWPLSDGTHLRIVAQPMPDGGLAIIAEDRTEQLAL 416

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP----GTHIR 481
               +TL++ +  T+D L E +AVF PDG ++L N +F S W  E   L       T + 
Sbjct: 417 SATRDTLLRTRTATLDSLFEALAVFAPDGHLQLWNRSFASTWGVEAETLDEHPLVDTMLE 476

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            IA   ++  +          +I +   +R      + L     LE++ +PLP+   +LT
Sbjct: 477 EIAGNLAKPKH----IKRVGEVIRTATLDRNETGSRVALADGRTLEFAGVPLPDGNGLLT 532

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            ++VT + +AE AL E+N+AL +AD++K  F+ ++SYE R+PLT+I GF +LL++   G 
Sbjct: 533 TLDVTANEQAETALRERNQALEQADQVKTRFLANMSYEFRTPLTSIGGFAELLESGVAGE 592

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +  +YV+ I  S   L   V ++LDL+  +AG++ L    + L   + +V      +
Sbjct: 593 LSPQGREYVQAILDSVGRLTEQVENVLDLSQSEAGLLPLRKEKLELQPFVTQV-----VR 647

Query: 662 MHENNIRIKVIS-DGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             E  I  K +S D + G+ +   ADR++L +    +L NA+  + +G  +++  A+   
Sbjct: 648 EREAEIEAKGLSLDLRGGANIKVEADRRQLARAVGHLLDNAIVATDRGGKILVDLAKKPE 707

Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                + +NG+ +  E++ +++    +S    G  R  GLG+ +    I  HGG ++I S
Sbjct: 708 GTRIVLSDNGAGMSSEELRRALEGLRISEDGEGIERRQGLGIPLARQLIEAHGGDLTIQS 767

Query: 777 SDEGVTTINCRIP 789
                T+    +P
Sbjct: 768 QTGLGTSATILLP 780


>gi|296283894|ref|ZP_06861892.1| two-component signal transduction histidine kinase [Citromicrobium
           bathyomarinum JL354]
          Length = 784

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 145/529 (27%), Positives = 256/529 (48%), Gaps = 16/529 (3%)

Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
           G  + +++  + L   G AG A+D+ ++  +  +     E    +L  L+V +A FD  R
Sbjct: 259 GMRRRFRVSDLPLAEEGVAGYAVDIQEQEDLAREHRAYREAQRSMLDRLSVGVAQFDDQR 318

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            L F N+ F  L  +           + LL   R   +LPE  ++ +W+++  + +++ +
Sbjct: 319 RLTFANQPFRRLLGVRPGASGLGTPFERLLSDARDEGRLPEVRDFPSWRKDRMAWFEAGD 378

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           T ++ W L +G  L V+    P GG   + E+ T Q+ L    +TL++ +   +D L E 
Sbjct: 379 TQEEDWPLSDGTHLQVVGQPMPDGGLALILEDRTEQLSLAANRDTLLRTRTAMLDSLFEA 438

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +AVF PDGR++L N +F   W  E + L     +  +                   +I S
Sbjct: 439 LAVFAPDGRLQLWNHSFPETWGLEPDALDEHPSVDALLGLIQPNLARPKQAKGVGEVIRS 498

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
              +RK   G L+L     +E++ IPLP+   +LT ++VT + +AE AL ++ EAL +AD
Sbjct: 499 ATLDRKERAGRLQLADGRTIEFAGIPLPDGNGLLTTLDVTANEQAETALRDRAEALEQAD 558

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           ++K  F+ ++SYE R+PLT+I GF +LL+    G L+    +YV  I  S   L + V +
Sbjct: 559 KVKTRFLANMSYEFRTPLTSIGGFAELLQAEVAGPLSDGAKEYVAAIIESVARLTDQVEN 618

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS----FVA 682
           +LDL+  +AG++ +    + L   +  V      +  E+ I  K I+    GS      A
Sbjct: 619 VLDLSQSEAGLLPIARRELSLLAFVTGV-----ARAREDVIETKSITLDLRGSQALKLQA 673

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L +   ++L NA++ S +   +++  A+ +G     + +NG  + E+      +  
Sbjct: 674 DPRQLGRAIGQLLDNAIEASGEKGRILVDLAKQDGGVRIVISDNGRGMDENELALALDGM 733

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            S +  G    R  GLGL +    I  HGG   I S     T+++  +P
Sbjct: 734 RSASEGGAEATRRQGLGLPLARQLIEAHGGRFDIHSEKRIGTSVSLWLP 782


>gi|149184288|ref|ZP_01862606.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. SD-21]
 gi|148831608|gb|EDL50041.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. SD-21]
          Length = 780

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 178/731 (24%), Positives = 316/731 (43%), Gaps = 52/731 (7%)

Query: 86  WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK-----LRKEGQS 140
           W G D+ PE + +L  R      +   LS E   +   +++ ++ + K     LR  G  
Sbjct: 75  WVGLDKVPEYLTELAGR------EGQGLSEEQVERLSAHVRRTQKSAKPFKMALRPPGSR 128

Query: 141 FDLVAETQ-NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199
             L       D A+   G      A + +        ELA    +  +  +       L 
Sbjct: 129 KSLALRGALADPAVSPSG-----AALIWVFDFTETEDELARLGEEAARARDDFGALVGLI 183

Query: 200 DSLDFLVWHRDQAGDILWANISY--------KKNTETEGIVFQKAIG-ESRKLFKEEIKK 250
           ++    +W R     +   N +Y              E I   +A+G  S     ++   
Sbjct: 184 EAAPMPMWFRGADMQLRLVNKAYVEAVGANSADQVVAEQIELVEAVGGRSAAQVAQQAAD 243

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRV--LNSFGE--AGIAIDVSKEITVNDQLT 306
           R      +E+    T+       + + + VRV  L   GE  AG AID+ +      +  
Sbjct: 244 R---RQPIERILTATI-------DNARRTVRVTDLPLVGEGIAGYAIDIEEMEEQAREFR 293

Query: 307 HTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
              E    +L  L++ +A FD    + F N+ F  ++ +    ++     D++L   R  
Sbjct: 294 AFREAQRSMLDQLSIGVAQFDAQHRMTFANQPFHRVFALPPGVVSERIRFDQMLMIAREN 353

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
            ++PE  ++ TW++ +   +   E  +  W LP+   L ++    P GG + + E+ T Q
Sbjct: 354 GRIPEVRDFPTWRKELAEWFLKDEPEEHQWPLPDSTHLRLVSQPLPDGGLVLIAEDRTEQ 413

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + L    +TL++ +  T D L E +AVF PDG ++L N  F   W  E   L        
Sbjct: 414 LALSATRDTLLRTRTATFDSLFEALAVFAPDGHLELWNRGFPIAWGLESEVLDGHPQAEQ 473

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +     +   E          I +   +RK   G ++L     L Y+ +PLP+   +LT 
Sbjct: 474 LLEAIGKQLAEPKEISQIGQTIRAATLDRKPRDGRIQLADGRTLTYAGVPLPDGNGLLTV 533

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VT S +AE AL E+N AL +AD +   F+ ++SYE R+PLT+I GF +LL     G L
Sbjct: 534 LDVTASQKAEEALRERNRALEEADAVMTRFLANMSYEFRTPLTSIGGFAELLSQGIAGEL 593

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  +Y++ IS S   L   V ++LDL+  +AG+M L  + +   +LL  ++Q I  K 
Sbjct: 594 TPQAREYIQAISLSVGKLTEQVENVLDLSQSEAGLMPLRKAKV---ELLPFIEQ-IVRKR 649

Query: 663 HENNIRIKVISD--GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            E  +   +  D  G     V AD Q+L +   +++ NA+  + +G  +++  A   G  
Sbjct: 650 EEAILGAGLTLDLKGNANKVVEADPQQLQRALGQLIDNAIAHTPRGGRILIDIATRRGLN 709

Query: 720 IFSVKNNGSSIPE-DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             ++ +NG  + + ++ +++    +S   +G  R  GLG+ +    +  HGG +   +  
Sbjct: 710 RIAISDNGEGMSQHELARALEGIRMSEDGKGIERRQGLGIPLARQLVEAHGGTLEFQTRK 769

Query: 779 EGVTTINCRIP 789
              TT    +P
Sbjct: 770 NAGTTATVTLP 780


>gi|85708406|ref|ZP_01039472.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
 gi|85689940|gb|EAQ29943.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
          Length = 782

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/533 (26%), Positives = 258/533 (48%), Gaps = 23/533 (4%)

Query: 272 GNNKSYKIVRV-LNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
           G+ +S ++  + L   G AG A+D+ ++  V  +     +    +L  L+V +A F    
Sbjct: 258 GSRRSVRVTDLPLGRDGVAGYAMDIEEQQQVTREFRAFRDAQRAMLDQLSVGVAQFTSEE 317

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            L F NR F  L+ I         S ++ L   R     PE  ++  W+    + + +SE
Sbjct: 318 KLAFANRPFRRLFGITAEVAEGRVSFEQFLSDAREHGSTPEVRDFPEWRREHRAWFDASE 377

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             ++ W L  G  L ++    P GG + + E+ T  + L    +TL++ +  T+D L E 
Sbjct: 378 AVEENWPLTGGVHLRIVAQPMPDGGLVMIAEDRTESLALSATRDTLLRTRTATLDSLFEA 437

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +A+F PDG ++L N +F  +W  E   L        +              +   AI+ +
Sbjct: 438 LAIFAPDGSVQLWNRSFGGMWGLESEFLDTHPSAEVLLEAIGENLRRPGEAEKIGAIVRA 497

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
              +R+  +G + L     L ++ +PLP+   +LT +++TDS +AE+AL E+  AL +AD
Sbjct: 498 ATLDRREKEGQVVLADGRTLRFAGVPLPDGNGLLTVLDITDSQKAEQALRERAVALEEAD 557

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K  F+ ++SYE R+PLT+I GF +LLK+   G L    S+YV+ I +S   L   V +
Sbjct: 558 AVKARFLANMSYEFRTPLTSIGGFAELLKSGAAGELGEGASEYVDAILSSVERLTEQVEN 617

Query: 627 ILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           +LDL+  +AG++ +    I     L  L+ E +Q+I       +++      G+ G  V 
Sbjct: 618 VLDLSQSEAGLLPIEKEEIDLLAFLTKLVREREQAIIGAGLGLDLK------GRRGRVVE 671

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSSI-PEDMCK 736
           AD ++L +    +L NA++ + +G  + ++  +   D  +    S+ + G  + P+++ +
Sbjct: 672 ADPRQLGRALGHLLDNAIEATPEGGKITIELPKPTDDDAWRGKVSISDTGKGMTPDELAR 731

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +       ++   +  G GLG+ +    I  HGG + ++S  +  T+    +P
Sbjct: 732 AEGTLNSDDSEMSE--GSGLGIRLARQLIEAHGGTLDLTSRKDVGTSAVIVLP 782


>gi|218510751|ref|ZP_03508629.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Brasil 5]
          Length = 367

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 96/273 (35%), Positives = 154/273 (56%), Gaps = 4/273 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK      L KA ++LR   QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPAETGAPQ-DGEFLAFGLWLKSRSASDLEKAIDRLRDGAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y    E      Q+AI E R++     ++R+ +++  E  F +T+ST+ HGN  
Sbjct: 275 TWVNQAYGDAVEARSP--QEAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
            + +V V    G AG+A+DVS    V  +L  T
Sbjct: 333 FFDVVDVTLPGGSAGMAVDVSDIEAVRAELDRT 365


>gi|46205760|ref|ZP_00048127.2| COG2202: FOG: PAS/PAC domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 219

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 124/207 (59%)

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y + E     W+LP+G+ L V+   NP+GG  +++ +++  + L ++Y+ L+K Q ET++
Sbjct: 9   YHAVEATDTPWYLPDGRALRVVADPNPQGGLTYLYHDVSESMKLASRYDALMKEQAETLE 68

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            L E VAVF  DGR+ ++N AF   W+ +   L+   H   + A C     +   W    
Sbjct: 69  ALKEPVAVFAADGRLTVANRAFAVTWRLDPATLAGRPHADAVIAACRALTPDQSPWAGIR 128

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             +T  ++ R      L++   +VL+ S  PLP   T+LTF++VT S   ERALTEKN+A
Sbjct: 129 QAVTGLNETRSGHACRLDMSDGTVLDCSAQPLPLGATLLTFIDVTASANVERALTEKNDA 188

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNII 588
           L +A +++++FV HVSYELRSPLTNII
Sbjct: 189 LERASQLRDTFVHHVSYELRSPLTNII 215



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           E L  L   +A+F  +  L   NR+F   W +D A LA  P  D ++   R+    P+Q 
Sbjct: 65  ETLEALKEPVAVFAADGRLTVANRAFAVTWRLDPATLAGRPHADAVIAACRALT--PDQS 122

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
            W   ++ +  + ++   H     + +G  L       P G T+  F ++T   ++E
Sbjct: 123 PWAGIRQAVTGLNETRSGHACRLDMSDGTVLDCSAQPLPLGATLLTFIDVTASANVE 179


>gi|27883942|gb|AAO21470.1| putative two-component sensor histidine kinase [Agrobacterium
           tumefaciens]
          Length = 301

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 129/214 (60%), Gaps = 2/214 (0%)

Query: 16  ICTLF-SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHS 74
           +  LF S ++AVF  I G++   ++  + ++RQR +L  +  E  + LS+   ++S+Y +
Sbjct: 76  VVRLFTSSEMAVFSVIIGVISAALLSTVWMVRQRGNLESESREIRTALSDANQRISQYQA 135

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
           L+ + N   I+WDG++  PE++GQL      PQ D + L+F  W+K     +L KA +KL
Sbjct: 136 LIADKNRRIIIWDGQNARPELLGQLPVETGAPQ-DNEFLAFGRWMKSWSAGELEKAIDKL 194

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           R  GQSFD+V ET  +  ++ +GR+SG  AF+R ++L+ + +ELAE  ++ ++L   IS 
Sbjct: 195 RGSGQSFDIVVETNREEILEAQGRISGGRAFVRFIALNNLRAELAELKIERERLMTSISA 254

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           F+ L D++D  VW RD  G + W N +Y +  E 
Sbjct: 255 FQNLLDAIDLPVWQRDADGQLTWVNHAYGEAVEA 288


>gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 851

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 141/251 (56%), Gaps = 2/251 (0%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD  +AE AL E       A+  KN F+ +VS+ELR+PL +IIGF++L+ T + G L
Sbjct: 601 IDVTDKKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNSIIGFSELMLTERRGEL 660

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N  Q  Y+  +  S   LL+L+N ILD++ ++AG M  N   + + DL+N+V  ++  + 
Sbjct: 661 NEYQKHYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNLPIIDLVNDVSNTMHPQA 720

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              NI ++ I+D  LG+  AD  +L +    +++NA+ F+ +   V L+  + +G+  F+
Sbjct: 721 LNKNIELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPERGKVTLQVNKLDGNIRFA 780

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IPED    +F  F        R   G GLGL++V+ F+ +H G + I S    
Sbjct: 781 VKDTGIGIPEDKQSDLFKPFTQIDTSASREYGGAGLGLALVKKFVEMHNGRIWIESEVNK 840

Query: 781 VTTINCRIPSK 791
            T I   IP K
Sbjct: 841 GTAIYFTIPVK 851


>gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 849

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/253 (36%), Positives = 150/253 (59%), Gaps = 4/253 (1%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+  +AE  + +   A   A+  K +F+ ++S+ELR+PL  +IGF+DLL +   G 
Sbjct: 564 MIDITEHKQAEEKMLQAKMAAEAANRAKINFIVNMSHELRTPLNAVIGFSDLLLSETAGP 623

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN KQ +Y E IS S + LL+++ND+LD++ ++ G ++L Y T+ +  ++ EV++ +++ 
Sbjct: 624 LNEKQKRYTENISKSGSHLLDVINDVLDISRLELGNIELYYETVDIPGVIEEVRRVLSSL 683

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
             E NIRI+   +  L +   DR +  QI   +L+NA+ FSS+   V +K AR  GD + 
Sbjct: 684 SAEKNIRIEYKVEQGLKTIDVDRVKFKQILYNLLNNAIKFSSEDGKVNIK-ARSEGDMVE 742

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            SVK+ G  I E     VF  FV       R+  GVGLGL++V+ F+ LHGG V + +S 
Sbjct: 743 ISVKDEGIGINEADYARVFLPFVQIDESISRKHGGVGLGLALVKRFVELHGGQVWVEASP 802

Query: 779 EGVTTINCRIPSK 791
              +T   RIP +
Sbjct: 803 GKGSTFTFRIPKR 815


>gi|21229203|ref|NP_635125.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907772|gb|AAM32797.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 715

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/268 (39%), Positives = 149/268 (55%), Gaps = 12/268 (4%)

Query: 531 IPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           IP+P+ Q      + T  +VT+   AER L EK  A   A+  K+ F+ ++S+ELR+PL 
Sbjct: 445 IPVPDEQGKIIGILQTCRDVTERKEAERLLHEKQIA-EIANRTKSEFLANMSHELRTPLN 503

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +IIGF+DLL     G LN KQ++ V  IS S   LLNL+NDILDL+ V+AG M+L+Y   
Sbjct: 504 SIIGFSDLLYEKVYGELNEKQARAVGNISRSGKHLLNLINDILDLSKVEAGKMELDYKEF 563

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L   LN +K  ++      NI I +  D  L    AD  R +QI   ++ NA+ FS + 
Sbjct: 564 ELAGKLNAIKSLLSPIADRKNIEIDIEVDKGLTHIRADEARFVQIMYNLMDNAIKFSHEN 623

Query: 706 STVILKAARDNGDFI-FSVKNNGSSIP-EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
             V ++A R  GD +  +VK+ G  I  ED CK +F  F  V +      +G GLGLS+V
Sbjct: 624 GLVKVRAER-KGDLVEITVKDKGIGIKEEDQCK-LFKPFSQVDSFSSKTFQGTGLGLSLV 681

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  +NLHGG V  +S     +T    +P
Sbjct: 682 KQIVNLHGGEVWFNSKIGEGSTFAFTVP 709


>gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 813

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/405 (29%), Positives = 207/405 (51%), Gaps = 15/405 (3%)

Query: 394 LPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQG-ETIDHL--SEGVAV 449
           +P   T   +++ N R  G I + E+LT     E K    V++Q  ET+  L  S  V  
Sbjct: 381 IPGEITYKPLISENSRFNGGIILVEDLT-----EVKRLEAVRLQQTETLRKLVGSIPVPA 435

Query: 450 FGPD--GRIKLSNPAFRSLWKTEENRLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITS 506
           F  D  G     N  F +L + ++  +  G HI + I    +  Y+  D   +       
Sbjct: 436 FCKDRNGVYIACNKGFENLLRVQKQDII-GKHIYDFIPHKIAENYHAMDIGLVKHKRNHV 494

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           ++   K   G++  +  +   +S +   ++  +   +++T+  +AE  + +       A+
Sbjct: 495 YETSLKFPDGSVHQVMLNKFIFSGVTEEDSVLLGIMIDITERKQAEERMLQAKMVAEAAN 554

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K +F+ ++S+ELR+PL  +IGF+DLL +  +G LN KQ +Y E IS S   LL+++ND
Sbjct: 555 RAKTTFIVNMSHELRTPLNAVIGFSDLLLSETVGPLNEKQKRYTENISKSGNHLLDVIND 614

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ ++ G ++L Y T+ +  ++ EV++ ++    + NI I+   +  L + +ADR +
Sbjct: 615 VLDISKLELGNIELYYETVDVAGIIEEVQRVLSPLSADKNIIIESYIEKDLKTVIADRVK 674

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L QI   IL+NA+ FSS+   V + A         SV++ G  I E   + VF  FV   
Sbjct: 675 LKQILYNILNNAIKFSSENGKVNIYAEPREDMIEISVEDEGIGIQESDYEKVFQPFVQID 734

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               R+  GVGLGL++V+ F+ LHGG V + +S  G +    RIP
Sbjct: 735 ESISRKHGGVGLGLALVKRFVELHGGKVWVKASPGGGSIFTFRIP 779


>gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii]
 gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 949

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 136/230 (59%), Gaps = 4/230 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L++ D +K+ F+ HVS+ELR+PLT+I+GF D +    +GSLN KQ QY+  I 
Sbjct: 567 LEAANAQLKQMDRLKSKFLAHVSHELRTPLTSIVGFADNMLEGLVGSLNMKQEQYLTRIK 626

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A+ T L  ++ D+LDL+ V+AG + L++  + L  L+++V + +       ++ I++ S 
Sbjct: 627 ANGTRLARMITDLLDLSRVEAGKLVLSFEQVCLPTLVSDVVEQLLPLAITKHLNIELQSP 686

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
                  AD+ RL QI + +L NA+ ++  G  V ++ + D  D     +++NG  IP D
Sbjct: 687 DPELLVWADQDRLSQILTNLLDNAIKYTPDGGQVAVELSVDTHDMARIVIRDNGQGIPSD 746

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
               +F+ F  V    R Q +G+GLGL+IV+  ++LHGG +++ S  D+G
Sbjct: 747 ALPKLFDPFFRVQQEERSQTKGLGLGLAIVKDLVDLHGGSITVRSEVDQG 796


>gi|119484750|ref|ZP_01619232.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457568|gb|EAW38692.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 727

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 143/554 (25%), Positives = 236/554 (42%), Gaps = 101/554 (18%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL+ +  AIA+FD N +L   N    + W +   FLA+ P  D +           E +N
Sbjct: 13  ILNQIDNAIALFDPNSHLILFNLKLAQTWGLSSEFLASQPDCDTVFR---------EIVN 63

Query: 371 WKTWKENIFSVYKS----SETHKDTWHLP--NGQTLHVIVTSNPRGGTIWMFENLTV--- 421
              W E      K+    SE+    + L   NG  L V  T  P GG ++ F  +T    
Sbjct: 64  QGYWSEEQCQHLKACLLKSESQGSAFCLEQNNGVCLEVYTTITPSGGCLFTFREVTPLRN 123

Query: 422 -QVDLETKYNTLVKVQG-----ETIDHLSEGVAVFGPDGRIKLSNPAFR--SLWKTEENR 473
            Q  L ++   L  + G     +  D+L E +A F  +  +++ N AF    +   E  +
Sbjct: 124 SQASLNSEVRRLKFLLGLNERLQDSDNLRE-IAQFALNYLVRVMNAAFGDVKVVTGEGKQ 182

Query: 474 LSPGTHIRNIAATCSRYYNES----------------DG--WDLF----AAIITSFDDER 511
              G    NI++     Y E                  G  W++     A  +  + +  
Sbjct: 183 RQAGAISNNISSQFVATYGEPVIAEMQQLLEKGIPYGQGLLWEVVETGEAVYVEDYANHP 242

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNA-----------------------QTML-----TFV 543
           ++++G        + +  I P+P                         + ML     T  
Sbjct: 243 QAMEG---FRHPGIGQLGIFPIPATNGGIIGVLTLESRNLEQLQAYPQRDMLYAACRTLG 299

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +  +A+  L + NE L +A ++K+ F+  +S+ELR+PL +I+GF+DLLK    G LN
Sbjct: 300 TAIERAQAQDRLRQINEDLERASQMKSEFLASMSHELRTPLNSILGFSDLLKRQISGELN 359

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  +V+ I  S   LL L+NDILDL+ ++AG  +LN   + ++ L NE  + I  +  
Sbjct: 360 HRQINHVKLIEKSGQHLLQLINDILDLSKIEAGKTELNIQAVEVHRLCNECLKMIQPRAD 419

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGD 718
           +  + + +  D +L     D +R+ QI   +LSNA+ F+ +   + L       ++  GD
Sbjct: 420 KKRLALSLELDYRLNQVALDERRVRQIIINLLSNAVKFTPEAGIIKLSGRLAYGSQMEGD 479

Query: 719 F--------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           +                 V+++G  IPED    +F  F        RR  G GLGL++ +
Sbjct: 480 YRPDCSPVNASTPYLCLEVQDSGIGIPEDRWHLLFRPFQQVDASLTRRHEGTGLGLALTK 539

Query: 763 SFINLHGGHVSISS 776
               LHGG VS+ S
Sbjct: 540 RLAELHGGTVSLQS 553


>gi|294494969|ref|YP_003541462.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292665968|gb|ADE35817.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 625

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 141/252 (55%), Gaps = 2/252 (0%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F +++    AE    E  +A  +A++ K+ F+ ++S+ELR+PL ++IGF+D+L     G 
Sbjct: 370 FQDISQRKNAEENAIEAKKAAEQANQTKSEFLANMSHELRTPLNSVIGFSDILSKEVRGK 429

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN  Q +YV  I+ S + LL+L+NDILDL+ ++AG  +L YS+  L++ L+E+   I   
Sbjct: 430 LNDSQKKYVSNITKSGSHLLSLINDILDLSKIEAGQKQLEYSSFDLHEALDEISILIKPL 489

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + + NI +++    +     ADR++  QI   +LSNA  F+    T+ + A ++      
Sbjct: 490 ISKKNIDLQMDLPPEDSRVYADRKKFKQIMYNLLSNASKFTPDKGTITIVANQEKDKLKV 549

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V++ G  IPE    ++F  F  V +A   + +G GLGLS+    + +HGG V + S   
Sbjct: 550 AVQDTGMGIPEADQATIFEPFQQVKSAKSSEYKGTGLGLSLARELVEMHGGQVGLKSEVG 609

Query: 780 GVTTINCRIPSK 791
             +T    IP K
Sbjct: 610 MGSTFTFTIPDK 621


>gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina
           mazei Go1]
          Length = 716

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 146/253 (57%), Gaps = 7/253 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF ++T+    E+ L EK  A   A+  K+ F+ ++S+ELR+PL +IIGF+DLL     G
Sbjct: 460 TFRDITERKAIEKLLQEKQVA-EIANRTKSEFLANMSHELRTPLNSIIGFSDLLCDQIYG 518

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN KQ +Y   IS S   LLNL+NDILDL+ V+AG M+L+Y    L D LN VK  ++ 
Sbjct: 519 KLNEKQLKYTNNISKSGKHLLNLINDILDLSKVEAGKMELDYREFELADRLNSVKSLLSP 578

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                NI+I++  +  L +  AD  R +QI   ++ NA+ FS + + V ++A R  G+F+
Sbjct: 579 IAARKNIKIEINVNKDLTTICADEARFVQIMYNLVDNAIKFSFENNPVRIEARR-KGEFL 637

Query: 721 -FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             +V + G  I PED  K +F  F   A    ++  G GLGLS+V+  +NLHGG+V   S
Sbjct: 638 ETTVTDIGIGIKPEDQHK-LFQPFSQVAAFSSKKFQGTGLGLSLVKQIVNLHGGYVWFRS 696

Query: 777 SDEGVTTINCRIP 789
                +T    IP
Sbjct: 697 IPGEGSTFAFAIP 709


>gi|20093164|ref|NP_619239.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19918507|gb|AAM07719.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 1028

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 137/251 (54%), Gaps = 2/251 (0%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T +++T   R+E  L +       A   K+ F+ ++S+ELR+PL +IIGF+D+L     G
Sbjct: 460 TGLDITAHRRSEEKLLQAKLEAEAASCTKSEFLANMSHELRTPLNSIIGFSDILIERVFG 519

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN KQ +YV  IS S   LL L+NDILDL+ V+AG M L+YS   ++ +  EVK ++  
Sbjct: 520 ELNEKQLKYVNNISGSGKHLLGLINDILDLSKVEAGKMDLHYSEFTVDSVFEEVKSTLFP 579

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                ++ I  +     G   ADR RL+QI   ++SNA+ F+ +G  V +   +     +
Sbjct: 580 LAQAKSLEINFVVGPDFGDIQADRSRLIQILYNLVSNAIKFTPEGGRVSVYCKKSGSRAL 639

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           FSV + G  I  +  K +F  F  + ++   Q  G GLGL++V+  +NLH G + + S  
Sbjct: 640 FSVTDTGIGISSEDQKKLFQPFTQIDSSSARQYCGTGLGLALVKKIVNLHKGDIWVESEL 699

Query: 779 EGVTTINCRIP 789
           E  +T    IP
Sbjct: 700 EKGSTFMFTIP 710


>gi|298291978|ref|YP_003693917.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296928489|gb|ADH89298.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 786

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/493 (25%), Positives = 233/493 (47%), Gaps = 31/493 (6%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L N+   +A++D    L   N+ F E  ++   FL +  + ++ + +L    +  E    
Sbjct: 22  LENMAQGVAMYDAEHRLVTWNQLFREYLDMPEEFLGSEHTFEDYIRYLALRGEFGEVDIE 81

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +T    I  +  S   H+     P+G  L V     P GG I ++ ++T +   E K   
Sbjct: 82  QTLARRIAQLKTS---HRFERIRPDGTVLEVRRDPVPGGGFIAIYTDITERKQAEMKLRE 138

Query: 432 LVKVQGETIDHLSE-GVAVFGPDGRIKLS-NPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             + +   ID  +  G+ +   D    L  NP+F  L   + + +  G  + ++      
Sbjct: 139 -DEERFRAIDAAAPVGLVIVDADDHTVLHLNPSFCELVGKQADEVL-GQPLDDV------ 190

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLP---NAQTMLTFV 543
            ++ ++G D   AI+ +   ERK  Q    +  D    ++++   PL        + +FV
Sbjct: 191 LHDPANG-DALVAIVDARSSERKEFQF---IRPDGTTRWTMVSQVPLDFRGEKAVICSFV 246

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D VRAE+ L E  EA   A  +K++F+ ++S+ELR+PL  IIG++++L        N
Sbjct: 247 DISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTPLNAIIGYSEILSEDAADDGN 306

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     ++ I ++   LL L+NDILDL+ ++AG M +    + L  +++EVK  +   M 
Sbjct: 307 TAMVADLDKIQSAGKHLLGLINDILDLSKIEAGRMDVYLEQVFLTRMVDEVKTIVGPMMQ 366

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGD 718
           +N  ++ V     +G+   D  +L Q    +LSNA  F+ +G TV L+ +RD     +  
Sbjct: 367 KNANQLVVECPVDIGTLRTDLTKLKQSLINLLSNAAKFTKEG-TVTLRISRDAMPDGSSA 425

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V ++G  + E+    +F  F        R   G GLGL+I + F+ + GG ++++S
Sbjct: 426 IRFDVSDSGIGMTEEQMGRLFQAFTQADSSTTRNFGGTGLGLTITKHFVAMLGGTIAVAS 485

Query: 777 SDEGVTTINCRIP 789
                +T    +P
Sbjct: 486 EAGRGSTFTIELP 498


>gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 375

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 142/271 (52%), Gaps = 8/271 (2%)

Query: 526 LEYSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E S+ PL   + +L      + TD  R ER+L EKN  L +A++ K+ F+  +S+ELR+
Sbjct: 98  VEISLSPLRTPEGLLVTSAIRDTTDRKRIERSLQEKNAELERANQAKDRFLASMSHELRT 157

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  IIGF + L   K G +N KQ +Y+E I      LL+L+ND+LDL  V AG ++L+ 
Sbjct: 158 PLNGIIGFAEFLADGKPGPVNGKQKEYLEDILNGGRHLLHLINDMLDLVKVQAGKLELHL 217

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           +T  + D + EV   +        I + V           D QR  Q+   +LSNA+ F+
Sbjct: 218 ATFRIEDAIEEVCAGVRPLADNKRIGVHVEIAPGFSPITHDEQRFKQVLYNLLSNAIKFT 277

Query: 703 SKGSTVILKAARDNGD-FIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
             G  V +K  +   D F  SV++ G  I PED+ + +F  F  +   H  +  G GLGL
Sbjct: 278 DDGGQVEVKVEQRGADRFCLSVRDTGIGIKPEDI-QRLFVEFEQLETGHARRFGGTGLGL 336

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    + L GG +S+ S+    +T +  +P
Sbjct: 337 ALTRKIVELKGGTISVESAVGRGSTFSVTLP 367


>gi|91772785|ref|YP_565477.1| signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
 gi|91711800|gb|ABE51727.1| pleC-like signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 383

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 140/253 (55%), Gaps = 2/253 (0%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L  ++  +S   +R L E    L  A  +K+ F+  +SYELR+PL +IIGF+D+L+T +
Sbjct: 127 LLVALHAYESEILKRTLIETKIDLDDACHVKSDFLASMSYELRTPLNSIIGFSDVLRTEE 186

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +G LN KQ +Y++ +S S   LL L+N +L+L  +++G ++L    + +++++ EVK  +
Sbjct: 187 IGPLNEKQLKYLKNVSTSGKELLELINGLLELLKIESGKVQLQVEDVDVSEVIQEVKVLL 246

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +  E NI +       +GS  ADR +   +   +++NA++F S   T+   A     D
Sbjct: 247 EPRTVEKNISLVCNVRSDVGSIKADRAKFKDVLYDLINNAINFVSDDETIRCYATVHESD 306

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              ++   G  IPE+  K+VF  F  V N H  + +G GL L IV+  + LHGG + I S
Sbjct: 307 LYVTIHYTGVGIPEEELKNVFQPFINVRNFHVQKYQGTGLRLPIVKKIVELHGGAIWIES 366

Query: 777 SDEGVTTINCRIP 789
             E  +T    IP
Sbjct: 367 KPENGSTFTFTIP 379


>gi|21227050|ref|NP_632972.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20905373|gb|AAM30644.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1]
          Length = 397

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 142/258 (55%), Gaps = 4/258 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + ++   N+      E  L    +     +  KNSF+ ++S+ELR+PL ++IGF+DLL  
Sbjct: 119 ECLMHTCNINGQKELETTLLRAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLE 178

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G +N+KQS+YV  I  S   LL ++N++LD++ ++AG   L Y  + +  L+ EV+ 
Sbjct: 179 GAFGPMNTKQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYEDVDVASLIGEVRM 238

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++ +      I +++  D  +G+  AD  +L QI   ++SNA+ F+     V++ A +  
Sbjct: 239 NLLSPASVKKINVELKIDPSVGNVEADISKLRQILYNLVSNAIKFTPARGKVVISACKKE 298

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           G     V +NG  I ED  + +F  F    S+A RG   G GLGL IV +F++LHGG +S
Sbjct: 299 GVLEVKVSDNGIGISEDSYEKIFMPFTQADSSAARGY-GGAGLGLFIVRNFVDLHGGDIS 357

Query: 774 ISSSDEGVTTINCRIPSK 791
           ++S     +T    IP+K
Sbjct: 358 VNSEVGKGSTFTFTIPAK 375


>gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 995

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 147/265 (55%), Gaps = 4/265 (1%)

Query: 529 SIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +++ L     +L FV ++T   +AE  L         A++ K+  + +VS+ELR+PLT+I
Sbjct: 724 TLMNLSGKPVILGFVRDITVRKQAEEKLINAKLEAEAANQAKSELLANVSHELRTPLTSI 783

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF+D++   K+G LN  Q++Y++ I  S   LL+L+NDILDLA +++G ++L+   I +
Sbjct: 784 IGFSDVILKRKVGDLNDNQTRYLDKIHKSGQHLLDLINDILDLAKIESGKLELHREKISI 843

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             LLN+++  +     +  + +    D  +    AD  +L QI   ++ NA+ F++KGS 
Sbjct: 844 PALLNDLESKLYPFASKKGLSLDSEIDPNIEYIYADEIKLRQILYNLIYNAIKFTNKGS- 902

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           V +   + N  + FSV + G  IPED    +F  F        RR  G GLGL++V+  +
Sbjct: 903 VTVTVRQKNDAYQFSVIDTGIGIPEDKQDEIFESFRQLDTGASRRYAGTGLGLALVKRLV 962

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            +HGG + + S +   TT    IPS
Sbjct: 963 EIHGGQIWVESEESKGTTFTFTIPS 987


>gi|163795280|ref|ZP_02189247.1| Sensor protein gacS [alpha proteobacterium BAL199]
 gi|159179266|gb|EDP63797.1| Sensor protein gacS [alpha proteobacterium BAL199]
          Length = 727

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 177/364 (48%), Gaps = 18/364 (4%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI------AATCSRYY 491
           + +D  SEG+A +  D R+ + N A+R       + L PG    +       A       
Sbjct: 355 QALDARSEGLAFWDRDDRLVMCNQAYRDQSGKSGSTLVPGISYEDYIRAGIEAGEVPAAV 414

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
              D W      +    + R++L  T+E+   D  L       P+  T+LT  ++++  R
Sbjct: 415 GREDAW------LQERLEVRRNLPYTVEIFRGDRWLLIREQRTPDGGTLLTATDISELKR 468

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E AL +  E  + A+  K +F+  +S+ELR+PL  IIGF +++K+ ++ S +  Q +Y 
Sbjct: 469 REDALVKAVEQAQLANRAKMAFLATMSHELRTPLNAIIGFAEIIKSGQIASNSDVQGEYA 528

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            YI  S   LL ++ND+LD++ ++AG + L+     L  L++E  + I  K   + +R+ 
Sbjct: 529 GYIHESGAHLLAVINDLLDVSRIEAGRLVLDEKPFGLASLIDECDRMIRQKAEADGLRLA 588

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
           + + D  LG    DR+   QI   +LSNA+ F+  G  V L A RD G  +   V++ G 
Sbjct: 589 MATVDPGLG-IHGDRRAFKQILINLLSNAVKFTESGGAVTLTAERDAGGRLRMVVRDTGI 647

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  +    +F  F  + N H  +  G GLGL I ++ +  HGG +   S+    +T+  
Sbjct: 648 GVEANRVVELFEPFRQLENVHARRHHGTGLGLYITKNLVEAHGGSIVFESTVHEGSTVTI 707

Query: 787 RIPS 790
            + S
Sbjct: 708 TLAS 711


>gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 761

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 134/235 (57%), Gaps = 2/235 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   +AE AL     A   A+  K+ F+ ++S+EL++PL +IIGF+DLLK    G LN
Sbjct: 499 DITVRKKAEEALINAKTAAEVANRTKSEFLTNMSHELKTPLNSIIGFSDLLKEEIAGPLN 558

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQS+YV++IS+S   LL ++NDILDL+  ++G   LN     +++ +N+V   +  +  
Sbjct: 559 EKQSRYVQFISSSGKNLLEIINDILDLSKAESGEEDLNVEKFSVDESINKVISVVLPQAQ 618

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E NI +   S+ +     AD  +  QI   +LSNA+ F+  G ++ +   ++       V
Sbjct: 619 EKNIILNYQSENRTLWITADEGKFRQIMENLLSNAIKFTPAGGSIDVTLKQEGLLVTIEV 678

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           K+ G  IPED  + +F  F+       R   G GLGL++V+ ++ +HGG++ + S
Sbjct: 679 KDTGIGIPEDSFEKIFKPFIQIDSSLSRNFEGTGLGLTLVKKYVEMHGGNIYVES 733


>gi|209523399|ref|ZP_03271954.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209496141|gb|EDZ96441.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 728

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 135/545 (24%), Positives = 240/545 (44%), Gaps = 83/545 (15%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL+ +  AIA+FD +  L   N     +W I +  LA  PS D++   + ++ KL  + +
Sbjct: 13  ILNQIDQAIALFDSSDRLILFNPQLAAIWGISVDQLAAQPSLDDICAEI-TSKKLWLKPD 71

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT----VQVDLE 426
           W+  ++ +    +   +     H  N   L V   +   GG +  F ++T     Q+ L 
Sbjct: 72  WEHLRQTLRDCVRGEISFCIQQH--NQIYLEVHSQTTASGGRLLTFRDITDHRNTQLSLN 129

Query: 427 TKYNTLVKVQG-----ETIDHLSEGVAVFGPDGRIKLSNPAF---RSLWKTEENRLS--- 475
           T+   L  + G     +  D+L + +A F  +  +  +N AF   + +    ENR++   
Sbjct: 130 TEVRRLRFLLGLNERLQDSDNL-DNIAQFALNYLVNTTNAAFGDVKVILGEGENRITGML 188

Query: 476 --------------PGTHIRNIAATCSRYYNESDGWDL-----------FAAIITSFDDE 510
                         P       A +    Y E   WD+           +A    +F   
Sbjct: 189 GNQISGHFVATYGEPAVAEMKAALSQGIPYGEGLLWDVVRTGEPRFVRDYANHPKAFSPF 248

Query: 511 RKSLQGTLELLSDSVLEYSIIPL--------------PNAQTML----TFVNVTDSVRAE 552
           R    G L +         II +              P    +     T     +   A+
Sbjct: 249 RHPGIGQLGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAEAQ 308

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L + NE L +A ++K+ F+  +S+ELR+PL +++GF DLLK    G+LNS+Q   V++
Sbjct: 309 ERLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQVQF 368

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+L+NDILDL+ +++G  +LN  ++ +++L +E  + +  +  +  + + + 
Sbjct: 369 IEKSGWHLLHLINDILDLSKIESGKTELNLESVDIHELCSECLKMVQPRADKKCLALSLE 428

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDF-------- 719
           SD ++     DR+R+ QI   +LSNA+ F+ +G  V L       ++  GD+        
Sbjct: 429 SDYRITQVWLDRRRVRQIMINLLSNAIKFTPEGGRVRLSGHLAYGSQIEGDYRPDCSPIN 488

Query: 720 ------IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                    V+++G  IP+D    +F  F  + ++   +  G GLGL + +    LHGG 
Sbjct: 489 DSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGT 548

Query: 772 VSISS 776
           VS+ S
Sbjct: 549 VSLQS 553


>gi|144899922|emb|CAM76786.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 830

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 168/352 (47%), Gaps = 47/352 (13%)

Query: 450 FGPDGRIKLSNPAFRSL---WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            G DG I  +NPA   L   W T   R  P                  D W     IIT 
Sbjct: 473 IGIDGAILHANPASEPLLSEWATGMGRKVP------------------DEWH---GIITE 511

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRK- 564
                + LQ  L ++   VL  +++P+  A  +  +  +V+D V AER L + NE L + 
Sbjct: 512 VLATGRQLQAELPVIG-RVLSLTLVPVKGAGYVNIYATDVSDRVAAERQLADANEDLERR 570

Query: 565 -----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQ 606
                            A   K+ F+  +S+ELR+PL  IIGF++++  S  G L NS+ 
Sbjct: 571 VEERTRDLVRAKEQAELASRSKSEFLATISHELRTPLNAIIGFSEVMAGSMFGPLGNSRY 630

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y   I  S   LL ++NDILD++ ++AG M L++  + +  +++   + + T+   N+
Sbjct: 631 QEYAGDIVQSGRHLLAVINDILDVSKIEAGQMSLDFGPVDIPPVIDSAVRLVETRARANS 690

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R++   D  L     DR+R LQI   +LSNA+ F+ +G  V + A+R+N      V++ 
Sbjct: 691 LRLRSEVDKDLPIIDGDRRRCLQILVNLLSNAIKFTPEGGQVTIGASRENDGIRLKVQDT 750

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  + E   +     F  V  +   Q  G GLGL + +S + LHGG + ++S
Sbjct: 751 GIGMSESEIQVALEPFRQVDGSLSRQYEGTGLGLPLAKSMVELHGGSLVVNS 802


>gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 975

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 180/379 (47%), Gaps = 20/379 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +  T   ++   ID++ +GV VF  D R+   N   R L    E  +  GT   N+ A
Sbjct: 584 EQELATQSAMRQTIIDNMGQGVVVFDGDERLVALNSHARQLLDLPETEIETGTS--NLEA 641

Query: 486 TCSRYYNESDGWDLFAAIITSFD--------DERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               Y      +    AI+            D R+  +      + SVLE     +P   
Sbjct: 642 LLL-YLAVQGEFGHSGAIMVKVQRRLARLRRDPRRVFEHARP--NGSVLEIRSTAMPGGG 698

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LTF ++TD  + E  L E  +A  + +  K +F+ ++S+ELR+PL  IIGF++L+K  
Sbjct: 699 LILTFTDITDRKKVEVTLREARDAAERGNRAKATFLANISHELRTPLNAIIGFSELMKHE 758

Query: 598 KLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G L     + YV+ +  S   LL L+NDILD++  +AG+  L  S + +  ++    +
Sbjct: 759 IFGPLQPPAYRSYVDDVHESGMHLLELINDILDMSKAEAGMTDLVESPVDVAAVVRASLR 818

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  +   N I ++  + DG L    AD +R+ QI   +LSNA+ F+  G  V + A  D
Sbjct: 819 MMDKRASANGISLEADLPDG-LAFLRADERRIRQILLNLLSNAVKFTDDGGMVRVTAQVD 877

Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
               +  V + G  + PEDM K V   FV    R  R+  G GLGL + ++ +N HGG +
Sbjct: 878 GRGMVIEVIDTGIGMTPEDMDK-VMEPFVQADTRLSRKYEGTGLGLPLTKALVNAHGGTM 936

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S  +  TT+    P +
Sbjct: 937 ELHSIPDHGTTVTVTFPPE 955


>gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 617

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 191/384 (49%), Gaps = 41/384 (10%)

Query: 413 IWMFENLTV-QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           +W+ + L V +++LET+   L+       +  S+ + VF  D R+   NPA + L   ++
Sbjct: 269 VWVNKYLQVHRIELETEKKNLI------FNASSDAILVFS-DNRLIQVNPAGKKLLGIDQ 321

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                G H++++   C    +E    D  + I       R      +  L    LE    
Sbjct: 322 L----GEHLQDLDKICDVGIDEILNLDSPSII-------RIETSIGIRELEVRKLEPEN- 369

Query: 532 PLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             PN  Q ++T  +VT+               R+ D  K++F+  VS+ELR+PL +++GF
Sbjct: 370 --PNDNQKIITMRDVTEQ--------------RELDRAKSNFISMVSHELRTPLNSVLGF 413

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +++ +   G L+ +Q +++EYI ASS  L+ LV+DILDL+ +DAG   L+ S ++   +
Sbjct: 414 ANVILSGATGPLSDRQREFLEYIQASSRHLVQLVSDILDLSRMDAGTFTLHKSKVLPEII 473

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +V   ++    E NI +  +SD K+    AD +R+ Q+   ++ NA+ F+  G  VI+
Sbjct: 474 AKQVVSQLSGLAAEQNIELAFLSDKKIPKIEADGRRVEQVLINLVGNAIKFTPPGGKVIV 533

Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           +  R+ GD + FSV + G  I E+    +F RF       Q   +G GLGL+I +S +  
Sbjct: 534 R-VRNQGDHVLFSVSDTGPGISEEDMDRIFERFYQPIMNPQAATKGTGLGLAIAKSLVEQ 592

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           HGG + + S+     T    +P K
Sbjct: 593 HGGKIWVDSTPGQGATFYFTLPIK 616


>gi|291566270|dbj|BAI88542.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 728

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 239/545 (43%), Gaps = 83/545 (15%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL+ +  AIA+FD +  L   N     +W I +  LA  PS DE+   + ++ KL  +  
Sbjct: 13  ILNEIDQAIALFDSSDRLILFNPQLASIWGISVDQLAAQPSLDEICAEI-TSQKLWSKPE 71

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT----VQVDLE 426
           W+  ++ +    +   +     H  N   L V   + P G  +  F ++T     Q+ L 
Sbjct: 72  WEHLRQTLRDSVRGEISFCIQQH--NQIYLEVHSHTTPSGRRLLTFRDITDYRNTQLSLN 129

Query: 427 TKYNTLVKVQG-----ETIDHLSEGVAVFGPDGRIKLSNPAF---RSLWKTEENRLS--- 475
           T+   L  + G     +  D+L + +A F  +  +  +N AF   + +    ENR++   
Sbjct: 130 TEVRRLRFLLGLNERLQDSDNLDK-IAQFALNYLVHTTNAAFGDVKVILGEGENRITGML 188

Query: 476 --------------PGTHIRNIAATCSRYYNESDGWDL-----------FAAIITSFDDE 510
                         P         +    Y E   WD+           +A    +F   
Sbjct: 189 GNQISGQFIATYGEPAVAEMKALLSQGIPYGEGLLWDVVRTGEPIFVQDYANHPKAFSPF 248

Query: 511 RKSLQGTLELLSDSVLEYSIIPL--------------PNAQTML----TFVNVTDSVRAE 552
           R    G L +         II +              P    +     T     +  +A+
Sbjct: 249 RHPGIGQLGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAQAQ 308

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L + NE L +A ++K+ F+  +S+ELR+PL +++GF DLLK    G+LNS+Q   V++
Sbjct: 309 ENLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQVQF 368

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L+NDILDL+ +++G  +LN   + +++L +E  + +  +  +  + + + 
Sbjct: 369 IEKSGLHLLQLINDILDLSKIESGKTELNLELVNIHELCSECLKMVQPRADKKCLALSLE 428

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDF-------- 719
           SD ++   + D++R+ QI   +LSNA+ F+ +G  V L       ++ +GD+        
Sbjct: 429 SDYRITQALLDKRRVRQIIINLLSNAIKFTPEGGKVRLSGHLAYGSQIDGDYRPDCSPIN 488

Query: 720 ------IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                    V+++G  IP+D    +F  F  + ++   +  G GLGL + +    LHGG 
Sbjct: 489 DSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGT 548

Query: 772 VSISS 776
           VS+ S
Sbjct: 549 VSLQS 553


>gi|121602141|ref|YP_988756.1| putative non-motile and phage-resistance protein [Bartonella
           bacilliformis KC583]
 gi|120614318|gb|ABM44919.1| putative non-motile and phage-resistance protein [Bartonella
           bacilliformis KC583]
          Length = 773

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 197/412 (47%), Gaps = 51/412 (12%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F   T Q DL  +         + I+++SE   ++  +GR+ +SN  F       +  L 
Sbjct: 377 FVEQTAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQ 427

Query: 476 PGTHIRNIAATC----SRYY-NESDGWDLFAAIITSFD------DERKSLQGTLELLSDS 524
            G     + A      S Y+  E DG     +I  + D      +ER++  G L  +   
Sbjct: 428 SGIQRATVTAMARPAISEYFLKEDDGTGNLTSIRQTADGFWLKINERRTQDGGLVCIGTD 487

Query: 525 VLE---------------YSII-----PLPNAQTMLTFV-NVTDSVRAERALTEKNEALR 563
           + E               +S I        NAQ   T V  +  S++AE+   E+ E+  
Sbjct: 488 ISELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVEKLNKSLQAEK---ERAESAN 544

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLN 622
           KA   K+ F+ ++S+ELR+PL  I+GF+D++  S  G L S++  +Y+  I  S T LL 
Sbjct: 545 KA---KSEFLANISHELRTPLNAILGFSDIMLQSTFGPLGSQRYEEYMRDIHNSGTHLLT 601

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILD++ ++AG   L+   + L  +++E  +++  +  E  I I      KL + + 
Sbjct: 602 LINDILDMSKIEAGRFTLDCKNVDLEPIISEAIRTLTPQAQEKKISITANIAPKLHAEL- 660

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D + + QIF  ++SNA+ F+  G ++ + A +   + IF +K+ G  IP+   K +   F
Sbjct: 661 DCRAMRQIFLNLISNAVKFTPSGGSIDICAFQKKNNLIFKIKDTGVGIPQSAIKKLGKPF 720

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             V N       G GLGL+I  S + LH G + I+S +E  TT+   IP K+
Sbjct: 721 EQVENQFTKTHTGSGLGLAISRSLLELHKGKLEIASEEENGTTVTITIPIKQ 772


>gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 707

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 2/251 (0%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T V +T+  + E  L    +    A+  K+ F+ ++S+ELR+PL +IIGF+DLL     G
Sbjct: 454 TGVEITERKKYEIELFRAKQDAEVANYAKSEFLANMSHELRTPLNSIIGFSDLLHDKVYG 513

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN++Q + V  IS S   LLNL+N+ILDL+ V+AG  +L+YST  L D+  EV+  +  
Sbjct: 514 ELNARQLKAVGNISGSGKHLLNLINEILDLSKVEAGGFELHYSTFWLADVFAEVRDMLFP 573

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                 I++++  +  L     DR+R+ Q+ S +++NA+ FS++ S V +KA+++N    
Sbjct: 574 FAASKGIKLELEIEKDLPGIYGDRERITQVLSNLMTNAVKFSNENSCVRVKASQNNNFIE 633

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  I  +    +F  F  + ++   + +G GLGL++V+  + LHGG V   S  
Sbjct: 634 VSVSDEGIGIAAEDHDKLFKPFSQIDSSSSRKYQGTGLGLALVKEIVQLHGGAVWFKSEV 693

Query: 779 EGVTTINCRIP 789
              +T    IP
Sbjct: 694 GKGSTFGFSIP 704


>gi|60683572|ref|YP_213716.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60495006|emb|CAH09824.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 557

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 146/242 (60%), Gaps = 9/242 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +LT  ++T   + E AL E  E    AD  K++F+ ++S+E+R+PL  I+GF++LL  
Sbjct: 159 RMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAA 218

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + +N LLN+++Q
Sbjct: 219 A---NTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQ 275

Query: 657 SIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
               K+  N+  +++I++  L S +   DR R+ Q+ S  +SNA+ F+++GS  I   + 
Sbjct: 276 LFRMKIGSNS-PVQIITESGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS 334

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +NG   F V + GS I  D  + VF+RFV    +  + G GLGLSI ++ +N  GG +  
Sbjct: 335 ENG-LRFYVSDTGSGISADKLEGVFDRFVR--LQSDKNGNGLGLSICKTIVNKLGGEIGA 391

Query: 775 SS 776
            S
Sbjct: 392 ES 393


>gi|265767426|ref|ZP_06095092.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263252731|gb|EEZ24243.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 556

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 146/242 (60%), Gaps = 9/242 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +LT  ++T   + E AL E  E    AD  K++F+ ++S+E+R+PL  I+GF++LL  
Sbjct: 158 RMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAA 217

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + +N LLN+++Q
Sbjct: 218 A---NTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQ 274

Query: 657 SIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
               K+  N+  +++I++  L S +   DR R+ Q+ S  +SNA+ F+++GS  I   + 
Sbjct: 275 LFRMKIGSNS-PVQIITEPGLSSCMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS 333

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +NG   F V + GS I  D  + VF+RFV    +  + G GLGLSI ++ +N  GG +  
Sbjct: 334 ENG-LRFYVSDTGSGISADKLEGVFDRFVR--LQSDKNGNGLGLSICKTIVNKLGGEIGA 390

Query: 775 SS 776
            S
Sbjct: 391 ES 392


>gi|53715629|ref|YP_101621.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|253566558|ref|ZP_04844011.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|52218494|dbj|BAD51087.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|251944730|gb|EES85205.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301165085|emb|CBW24653.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 557

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 146/242 (60%), Gaps = 9/242 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +LT  ++T   + E AL E  E    AD  K++F+ ++S+E+R+PL  I+GF++LL  
Sbjct: 159 RMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAA 218

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + +N LLN+++Q
Sbjct: 219 A---NTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQ 275

Query: 657 SIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
               K+  N+  +++I++  L S +   DR R+ Q+ S  +SNA+ F+++GS  I   + 
Sbjct: 276 LFRMKIGSNS-PVQIITEPGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS 334

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +NG   F V + GS I  D  + VF+RFV    +  + G GLGLSI ++ +N  GG +  
Sbjct: 335 ENG-LRFYVSDTGSGISADKLEGVFDRFVR--LQSDKNGNGLGLSICKTIVNKLGGEIGA 391

Query: 775 SS 776
            S
Sbjct: 392 ES 393


>gi|144899595|emb|CAM76459.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 565

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 194/391 (49%), Gaps = 47/391 (12%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E ++ +LV+     I        V G DGR++  N     ++      LS    I    +
Sbjct: 187 EARFRSLVEAAASII-------VVVGADGRVREFNREAERMFG-----LSAAAAIGRAWS 234

Query: 486 T---CSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTML 540
           T    +R   + D +D +       D+ RK  Q      +L   ++ +++ PL +   ++
Sbjct: 235 TILDSNRVGQDGDRFDQW------LDEVRKGWQVRDRETVLGQHIISWNLAPLSDDDGIV 288

Query: 541 TF-VNVTDSVRAERALTEKNEAL---------------RKADEI---KNSFVQHVSYELR 581
               ++T   RAE AL + N+ L               R+A+E    K+ F+ ++S+ELR
Sbjct: 289 IVGQDITQRRRAETALRQANDLLEYRVAARTAEAEAACRQAEEANRGKSEFLANMSHELR 348

Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL  IIGF+D ++   +G + N   ++YV+ I  S T LL+++ND+LDL+ V+AG   L
Sbjct: 349 TPLNAIIGFSDAMRLGVMGPVENPLYAEYVQAIWESGTHLLSIINDVLDLSKVEAGHFDL 408

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               + L  L  +V + +A K   + + +++  DG  G  + D  RL Q+   +L+NA+ 
Sbjct: 409 APERLPLTPLAEQVIRLMAEKAMRHRLELRLQVDGDPGHALVDPLRLKQVLFNLLANAVK 468

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVS-NAHRGQRR-GVGLG 757
           F+  G  VIL   RD+G     V ++G  + PED+ + V   FV  ++H  +R  G GLG
Sbjct: 469 FTPAGGHVILSLGRDDGGSWIKVADSGIGMRPEDIDR-VLEPFVQIDSHLSRRNMGTGLG 527

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L + + FI LHGG ++++S     T +  R+
Sbjct: 528 LPLAKRFIELHGGTLALASQPGQGTVVTIRL 558


>gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 726

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 2/251 (0%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T V +T+    E  L    +    A+  K++F+ ++S+ELR+PL +IIGF+DLL     G
Sbjct: 470 TGVEITERKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEKVYG 529

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN KQ++ V  IS S   LLNL+N+ILDL+ V+AG  +L+YST  L ++  EV+  I  
Sbjct: 530 ELNLKQTKAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDMIFP 589

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                 ++I++  D  L    AD++R+LQ+ S +++NA+ FS++   V +KA + +G   
Sbjct: 590 FATSKGLKIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVKAVQMDGFLK 649

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  I     + +F  F  + ++   + +G GLGL++V+  + LHGG V   S  
Sbjct: 650 ITVADDGIGIAAADHEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFESEV 709

Query: 779 EGVTTINCRIP 789
              +     IP
Sbjct: 710 GKGSVFGFSIP 720


>gi|153807923|ref|ZP_01960591.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
 gi|149129532|gb|EDM20746.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
          Length = 991

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 144/248 (58%), Gaps = 6/248 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + E+ L        +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 607 ITERKKMEQELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 663

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++T+LL L++DILDL+ ++AG + L+YS + +NDL+ E++ S   K+  
Sbjct: 664 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMRELENSCQLKLKS 723

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           +N++++ ++  +      ++ RL Q+    ++NA+ F+S+GS +     R N +  F V 
Sbjct: 724 DNVKLEFVAPEEPCFANIEKNRLSQLIINFVTNAIKFTSQGS-IRFGYERQNNELYFYVT 782

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D   S+F RFV      Q  G GLGLSI  + IN  GG + + S +   +T 
Sbjct: 783 DTGCGIPQDKLDSIFGRFVKLNSFAQ--GTGLGLSICRTLINHMGGKIGVESEEGKGSTF 840

Query: 785 NCRIPSKE 792
              +P K+
Sbjct: 841 WFTLPYKQ 848


>gi|254883253|ref|ZP_05255963.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642628|ref|ZP_07997274.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
 gi|254836046|gb|EET16355.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385716|gb|EFV66649.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
          Length = 554

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 141/248 (56%), Gaps = 13/248 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             + V D  R ++ L E  EA R A+   E K +F+ ++S+E+R+PL  I+GF  LL T+
Sbjct: 163 VLLTVRDVTRQKKILDELEEARRNAELAGEQKTAFLANMSHEIRTPLNAIVGFAGLLGTA 222

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                +  +  YVE I  ++ +LL LVNDILD++ ++AG ++  Y+ + +N ++ E++  
Sbjct: 223 S----DQDRISYVEIIKGNTNMLLQLVNDILDMSKIEAGTLEFIYTDVDVNQIMRELEGI 278

Query: 658 IATKMHENNIRIKVISDGKLG-SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
              ++ E ++ +++I + KL   F+  ++ R+ Q+ S  LSNA  ++ +GS  +    R+
Sbjct: 279 FRLRLEEADVPVRIIFEPKLPVCFIHTEKNRISQVISNFLSNAFKYTVQGSITMGYEIRE 338

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           NG   F V + G+ IPED    VF RF       +R+G GLGLSI  + I   GG + ++
Sbjct: 339 NG-ICFYVSDTGTGIPEDKVSQVFERFTK--LDAKRQGTGLGLSISRTIIKKMGGEIGVT 395

Query: 776 SS-DEGVT 782
           S   EG T
Sbjct: 396 SKYGEGST 403


>gi|49474041|ref|YP_032083.1| two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
 gi|49239545|emb|CAF25902.1| Two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
          Length = 773

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 194/411 (47%), Gaps = 50/411 (12%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F   T Q DL  +         + I+++SE   ++  +GR+ +SN  F       +  L 
Sbjct: 378 FAEETAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQILQ 428

Query: 476 PGTHIRNIAATCSRYYNE----SDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525
           PG     + A      NE     DG     +I  + D      +ER++  G L  +   +
Sbjct: 429 PGIQRETVEAMARPAINEYPLKDDGTGNLTSIRQTADGCWLKINERRTQDGGLVCIGTDI 488

Query: 526 LE---------------YSII-----PLPNAQTMLTFV-NVTDSVRAERALTEKNEALRK 564
            E               +S I        NAQ   T V  +  S++AE+   E+ E+  K
Sbjct: 489 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVEKLNKSLKAEK---ERAESANK 545

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNL 623
           A   K+ F+ ++S+ELR+PL  I+GF+D++  S  G L SK+  +Y+  I  S + LL L
Sbjct: 546 A---KSEFLANMSHELRTPLNAILGFSDIMLQSTFGPLGSKRYKEYMRDIYNSGSHLLTL 602

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDILD++ ++AG   ++   I L  +++E  +++  +  E NI +      KL + V D
Sbjct: 603 INDILDMSKIEAGRFTVDCKNIDLEPIISEALRTLIPQAQEKNIFVTTNIATKLHAEV-D 661

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
            + + QIF  ++SNA+ F+  G  + + A +   + +F +K+ G  IP+   K +   F 
Sbjct: 662 GRAIKQIFLNLISNAVKFTPSGGNIDVCALKKKNNLVFKIKDTGVGIPQSAIKKLGQPFE 721

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            V N       G GLGL+I  S + LH G + I S +   TT+   IP K+
Sbjct: 722 QVENQLTKTYTGSGLGLAISRSLLELHKGKLEIISKEMKGTTVTITIPIKQ 772


>gi|150395865|ref|YP_001326332.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150027380|gb|ABR59497.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 772

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 197/430 (45%), Gaps = 49/430 (11%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            VI T + R   I +  ++T Q  L  +Y    +   + I+  SE   ++    R+ + N
Sbjct: 352 QVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCN 411

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----------- 509
             F+  W+  ++ L PGT    + A  +R   E    D   +  +   +           
Sbjct: 412 THFQQAWQLPDHVLVPGTERTIVQAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQI 471

Query: 510 -ERKSLQGTLELLSDSV-----------------------LEYSIIPLPNAQTMLTFVNV 545
            ER++  G L  +   +                       L  S I L   +  L+  N 
Sbjct: 472 NERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRITLEQQKAELSVANA 531

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS- 604
                 ERA     EA   A+  K+ F+ ++S+ELR+PL  I+GF+++L+    G L S 
Sbjct: 532 NYQAEKERA-----EA---ANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSE 583

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K  +Y   I  S   LLN++NDILD++ ++AG M++    I L  L+ E  +       +
Sbjct: 584 KYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAEQ 643

Query: 665 NNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            NIR ++ +S G   +  ADR+ + Q+   +LSNA+ F+++G  + L+A +  G    ++
Sbjct: 644 KNIRVVQQVSSGL--TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTI 701

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++G  IP D  + +   F  V + +   + G GLGL+I  S   LHGG + I S++   
Sbjct: 702 ADSGIGIPRDALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGSIKIHSTENVG 761

Query: 782 TTINCRIPSK 791
           T I+ RIP +
Sbjct: 762 TIISVRIPDR 771


>gi|189465571|ref|ZP_03014356.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
 gi|189437845|gb|EDV06830.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
          Length = 1039

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + E+ LT   E   +++ +K++F+ ++S+E+R+PL  I+GF+ +L +++      
Sbjct: 654 ITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEE---EQ 710

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++T+LL L++DILDL+ ++AG ++LNYS I LN+L+ E+++    ++  
Sbjct: 711 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKT 770

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           + ++++ +          ++ RL Q+   +++NA+ F+ KGS       R+N +  F V 
Sbjct: 771 DAVKLEFVEPAGPCMVYTEKNRLSQLMINLVTNAIKFTEKGSIRFGYEMREN-ELYFYVA 829

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  +++F RFV      Q  G GLGLSI ++ I   GG + + S +   +T 
Sbjct: 830 DTGCGIPKDKQQNIFGRFVKLNSFAQ--GTGLGLSICQTLIERMGGRIGVESEEGKGSTF 887

Query: 785 NCRIPSK 791
              +P K
Sbjct: 888 WFTLPYK 894


>gi|29347950|ref|NP_811453.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572542|ref|ZP_04849944.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29339852|gb|AAO77647.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837957|gb|EES66046.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 391

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 164/304 (53%), Gaps = 15/304 (4%)

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSV 549
           + +  G+    A +     E+KS++       D+V+  S   L   + M LT  ++T   
Sbjct: 94  FEQRRGFTDLNATLNVLTSEKKSVE------CDAVISGSYFLLNEEENMVLTVHDITQLK 147

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE+ L    E    AD  K++F+ ++S+E+R+PL  I GF ++L ++   +   +++QY
Sbjct: 148 QAEKQLALAKEKAENADLSKSTFLANMSHEIRTPLNAITGFAEILASA---NTEEEKAQY 204

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  ++ +LL LVNDILD++ ++AG ++  Y+ + +N LL++++Q    K+++    I
Sbjct: 205 QEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLFQMKVNDAGGNI 264

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++I++  L   S   DR R+ Q+ S   +NA+ F+ +G+  I   ARD  +  F V + G
Sbjct: 265 QIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEGTISIGYEARDT-ELYFYVTDTG 323

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + IP D    VF RFV       ++G GLGLSI ++ +N   G +   S +   +T    
Sbjct: 324 AGIPADKLPEVFGRFVK--LNKDKKGTGLGLSISKTIVNKLEGQIGADSVEGKGSTFWFT 381

Query: 788 IPSK 791
           IP +
Sbjct: 382 IPYR 385


>gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 740

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/248 (36%), Positives = 134/248 (54%), Gaps = 3/248 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+   AE+ L EK  A   A+  K+ F+ ++S+ELR+PL +IIGF+DLL     G LN
Sbjct: 467 DVTERKEAEKLLQEKQVA-EVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIYGDLN 525

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ + V  IS S   LLNL+NDILDL+ V+AG ++L Y    L+  LN +K  ++    
Sbjct: 526 EKQLKAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLLSPIAD 585

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              I +++  D  L +  AD  R  QI   +L NA+ FS +   V + A R       +V
Sbjct: 586 RKMIEVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEIDAKRKGDTVEITV 645

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I  +    +F  F   A    ++  G GLGL++V+  +NLHGG++  +S     
Sbjct: 646 KDYGIGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFNSRIGEG 705

Query: 782 TTINCRIP 789
           +T    IP
Sbjct: 706 STFAFTIP 713


>gi|160883653|ref|ZP_02064656.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483]
 gi|156111066|gb|EDO12811.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483]
          Length = 391

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 176/331 (53%), Gaps = 24/331 (7%)

Query: 469 TEENRLSPGTHIRNIAAT---CSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLS- 522
           TEE R+      RN  A    C   ++      +  AI  +F+  R    L+ TL +++ 
Sbjct: 54  TEEKRVGDLLQCRNALAAEGGCG-THSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTS 112

Query: 523 -------DSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                  D+V+  S   L   + M +T  +VT   +AE+ L    E   KAD  K++F+ 
Sbjct: 113 DNTTVECDAVISGSYFLLNEEENMVITVHDVTRRKQAEKELRLAKEKAEKADISKSAFLA 172

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I GF ++L ++   +   +++QY E I  ++ +L+ LVNDILD++ ++
Sbjct: 173 NMSHEIRTPLNAITGFAEVLGSA---TTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIE 229

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFS 692
           AG ++   +T+ +N LL++++Q    ++ +    I++I++    S +   DR R+ Q+ S
Sbjct: 230 AGTLEFVQTTVDVNQLLSDLQQLFQMRVDDAGGNIQIIAESSRSSCMIQTDRNRVAQVLS 289

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
               NA+ F+ KGS  +   ARD  +  F VK+ G+ IP +    VF RFV       ++
Sbjct: 290 NFAGNAIKFTHKGSIRLGYEARDT-ELYFYVKDTGTGIPAEKLPDVFERFVK--LNKDKK 346

Query: 753 GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           G GLGLSI ++ +   GG +  +S + EG T
Sbjct: 347 GAGLGLSISQTIVAKLGGQIGANSVEGEGST 377


>gi|20091132|ref|NP_617207.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916235|gb|AAM05687.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 572

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 144/264 (54%), Gaps = 8/264 (3%)

Query: 521 LSDSVLE----YSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           LS+ VL     YS   L   + +L  +  ++TD+ + +  L         A + K+ F+ 
Sbjct: 273 LSNGVLRDVERYSYPILMGGKKLLYAIVSDITDNRKMQSELVRAKMEAEIASKAKSEFLA 332

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+ELR+PL +IIGF+D+L T   G LN KQ +YV  IS S   LL L+N ILDL+ V+
Sbjct: 333 SMSHELRTPLNSIIGFSDMLLTQNFGPLNKKQLRYVNNISVSGNHLLKLINGILDLSKVE 392

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG M+L      + D ++EVK  +     + +I+I  + D +L +  ADR +  QI   +
Sbjct: 393 AGKMELKVEEFSVLDSISEVKVLLTPLASKKDIQILSVVDKELTTIRADRTKFKQILYNL 452

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752
           + NA+ F+ +   VI+ A  +       VK+ G  I +   K +F  F  + N+  G+++
Sbjct: 453 VDNAIKFTHEDGFVIVDARVEGDQAKIMVKDTGIGISKAGVKKIFQPFTQLENSEYGKQK 512

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGLS+V+ F+ +H G + + S
Sbjct: 513 GTGLGLSLVKKFVEMHTGKIWVES 536


>gi|298387810|ref|ZP_06997360.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259415|gb|EFI02289.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 391

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 163/304 (53%), Gaps = 15/304 (4%)

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSV 549
           + +  G+    A +     E+KS++       D+V+  S   L   + M LT  ++T   
Sbjct: 94  FEQRRGFTDLEATLNVLTSEKKSVE------CDAVISGSYFLLNEEENMVLTVHDITQLK 147

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E+ LT   E    AD  K++F+ ++S+E+R+PL  I GF ++L ++   +   +++QY
Sbjct: 148 ETEKQLTLAKEKAENADLSKSAFLANMSHEIRTPLNAITGFAEVLASA---NTEEEKAQY 204

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  ++ +LL LVNDILD++ ++AG ++  Y+ + +N LL++++Q    ++++    I
Sbjct: 205 QEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLFQMRVNDAGKNI 264

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++I++  L   S   DR R+ Q+ S   +NA+ F+ +G+  I   ARD  +  F V + G
Sbjct: 265 RIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEGTISIGYEARDT-ELYFYVTDTG 323

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + IP D    VF RFV       ++G GLGLSI ++ +N   G +   S +   +T    
Sbjct: 324 AGIPADKLPEVFGRFVK--LNKDKKGTGLGLSISKTIVNKLEGQIGADSVEGKGSTFWFT 381

Query: 788 IPSK 791
           IP +
Sbjct: 382 IPYR 385


>gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 742

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 142/253 (56%), Gaps = 7/253 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF ++T     E+ + EK  A   A+  K+ F+ ++S+ELR+PL +IIGF+DLL     G
Sbjct: 473 TFRDITGKKAVEKLIQEKQIA-EIANRTKSEFLANISHELRTPLNSIIGFSDLLCEQIFG 531

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN KQ +Y   IS S   LL+L+NDILDL+ V+AG M+L+Y+   L   LN +K  +A 
Sbjct: 532 ELNEKQLRYAGNISKSGKHLLSLINDILDLSKVEAGKMELDYTEFELAGKLNTIKNLLAP 591

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                +I+I++  D +L +  AD  +  QI   ++ NA+ F+S+ S V +  AR  GD +
Sbjct: 592 IADRKSIQIEIEVDSRLTNLYADEAKFAQIMYNLVDNAIKFASENSPVNV-GARMKGDKV 650

Query: 721 -FSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +V + G+ I PED  K +F  F  V      Q +G GLGL +V+  + +H G+V   S
Sbjct: 651 EITVTDIGAGIKPEDQHK-LFKPFSQVDYFASKQHQGTGLGLYLVKQIVQMHRGYVWFRS 709

Query: 777 SDEGVTTINCRIP 789
                +T    IP
Sbjct: 710 VPGEGSTFAFAIP 722


>gi|319408254|emb|CBI81907.1| two-component sensor histidine kinase [Bartonella schoenbuchensis
           R1]
          Length = 772

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 190/398 (47%), Gaps = 38/398 (9%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q DL  +         + I+++SE   ++  +GR+ +SN  F       +  L  G  
Sbjct: 381 TAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIQ 431

Query: 480 IRNIAATC----SRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV--LE 527
              + A      S Y  + DG     +I  + D      +ER++  G L      +  L+
Sbjct: 432 RATVEAMARPAISEYLLKEDGTGNLTSIRQTADGCWLKINERRTQDGGLVCTGTDISELK 491

Query: 528 YSIIPLPNAQ-TMLTFVN------------VTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                  N++ ++ +F+              T+  +  ++L  + E    A++ K+ F+ 
Sbjct: 492 QQQEKFKNSEKSLFSFIQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLA 551

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATV 633
           ++S+ELR+PL  I+GF+D++  S  G L S++  +Y+  I  S T LL L+NDILD++ +
Sbjct: 552 NISHELRTPLNAILGFSDIMLQSTFGPLGSQRYKEYMRDIHNSGTHLLTLINDILDMSKI 611

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG   L+   I L  +++E  +++  +  E  + +      KL + V D + + QIF  
Sbjct: 612 EAGRFTLDCKNIDLGPIISEAVRTLTPQAQEKKVSVTENIAPKLHAEV-DCRAIRQIFLN 670

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           ++SNA+ F+  G  + + A +   + IF +K+ G  IP+   K +   F  V N      
Sbjct: 671 LISNAVKFTPSGGNIDVCAFQKENNLIFKIKDTGVGIPQAAIKKLGQPFEQVENQFTKTH 730

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL+I  S + LH G + I+S +E  TT+   +P
Sbjct: 731 TGSGLGLAISRSLVKLHKGKLEITSKEEKGTTVTITMP 768


>gi|91774050|ref|YP_566742.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713065|gb|ABE52992.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 582

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 149/275 (54%), Gaps = 12/275 (4%)

Query: 527 EYSIIPLPNAQTMLTFV----------NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           E  IIP+  + T+L +           ++T+  + E+ L +       A+  ++ F+ ++
Sbjct: 300 ENDIIPVEISSTILNYEGKSSIVSVIRDITEHKQHEQELLDAKVKAENANTAQSEFIHNI 359

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL + IGF++++ T  LG LN KQ +Y+  +  S   LL+L+N+IL+++ ++ G
Sbjct: 360 SHELRTPLNSTIGFSEMMITEVLGPLNDKQKKYLNNVKISGKHLLSLINEILNISKIENG 419

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L    + +   + +V+  +A  + EN   + V  +  +G F ADR +L QI   ILS
Sbjct: 420 EVELELDEVDIYTTVEDVEMLMAPILAENKNELIVNIEANVGKFTADRLKLKQILYNILS 479

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGV 754
           NA+ FS +   +I+     +G    ++ + G  + E    ++F  FV   + H  +++G 
Sbjct: 480 NAIKFSPENENIIMDIKVIDGKLQTNITDKGKGLSEKEQANIFQPFVQLDDEHSEKQKGT 539

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+IV+ F+ LH G + I S +   TT    IP
Sbjct: 540 GLGLTIVKRFVQLHKGKIWIDSEEGKGTTFCFTIP 574


>gi|237713937|ref|ZP_04544418.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409155|ref|ZP_06085699.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647480|ref|ZP_06725063.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294806519|ref|ZP_06765359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446093|gb|EEO51884.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352902|gb|EEZ01998.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637190|gb|EFF55625.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294446277|gb|EFG14904.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295085278|emb|CBK66801.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 391

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 176/333 (52%), Gaps = 28/333 (8%)

Query: 469 TEENRLSPGTHIRNIAAT---CSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLS- 522
           TEE R+      RN  A    C   ++      +  AI  +F+  R    L+ TL +++ 
Sbjct: 54  TEEKRVGDLLQCRNALAAEGGCG-THSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTS 112

Query: 523 -------DSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                  D+V+  S   L   + M +T  +VT   +AE  L    E   KAD  K++F+ 
Sbjct: 113 DNTTVECDAVISGSYFLLNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLA 172

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLAT 632
           ++S+E+R+PL  I GF ++L     GS N+++  +QY E I  ++ +L+ LVNDILD++ 
Sbjct: 173 NMSHEIRTPLNAITGFAEVL-----GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSK 227

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQI 690
           ++AG ++   +T+ +N LL++++Q    +++E    I++I++    S +   DR R+ Q+
Sbjct: 228 IEAGTLEFVQTTVDVNLLLSDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQV 287

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            S    NA+ F+ +GS  I   ARD  +  F VK+ G+ IP +    VF RFV       
Sbjct: 288 LSNFAGNAIKFTHEGSIRIGYEARDT-ELYFYVKDTGAGIPAEKLPDVFERFVK--LNKD 344

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           ++G GLGLSI ++ +   GG +   S + EG T
Sbjct: 345 KKGAGLGLSISQTIVAKLGGQIGADSVEGEGST 377


>gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 996

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 142/262 (54%), Gaps = 4/262 (1%)

Query: 531 IPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I L     +L FV  +T   +AE +L         A + K+  + +VS+ELR+PLT+IIG
Sbjct: 734 IDLKGRSVILGFVREITIRKQAEESLINSKLEAEAASQAKSELLANVSHELRTPLTSIIG 793

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+D+L   KLG LN  Q  Y+  +  S   LL+L+ DILDL+ +++G  +L+   + +  
Sbjct: 794 FSDILLKGKLGDLNESQKTYLSKVHRSGKHLLDLITDILDLSKIESGKHELHCEKVSIPQ 853

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ ++K++I     +  + I +  +  +    AD+ +L QI   ++ NA+ F+ +GS V 
Sbjct: 854 LMKDLKENIYPFASQKGLEINIDINRSIEYIYADKIKLRQILYNLVYNAVKFTEQGS-VT 912

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           +K   ++ D +FSV + G  IP D    +F+ F        RR  G GLGL++VE  + +
Sbjct: 913 VKLDWNDNDMLFSVIDTGIGIPADKQDEIFDSFKQLDSGASRRYSGTGLGLALVERLVEM 972

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG + + S +   +  +  IP
Sbjct: 973 HGGKIWVESEEREGSRFSFIIP 994


>gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1299

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 140/277 (50%), Gaps = 11/277 (3%)

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYE 579
            E+S+  L +   +    ++T   +AE  + +        N  L +A  +K+ F+  +S+E
Sbjct: 727  EFSLTLLEDGGLIRVCRDITQRKQAEEQMQQNHQRLAMANAQLERATRLKDEFLASMSHE 786

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            LR+PL  I+G ++ L+    GS+  +Q + +  I  S   LL L+ND+LDLA +++G M+
Sbjct: 787  LRTPLNAILGLSEALQEEVYGSITDRQRKSLSTIQGSGQHLLELINDLLDLAKIESGKME 846

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            L+   + L  L N     +  + H  NI++      KL     D +R+ Q+   +LSNA+
Sbjct: 847  LHICAVSLQKLCNSSLMFVRNQAHHKNIKLTSQVTEKLWEIEVDERRIRQVLINLLSNAV 906

Query: 700  DFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
             F+  G +VILKA  D       FSV + G  I ++    +F  FV    R  RR  G G
Sbjct: 907  KFTPTGGSVILKAEEDLLRNTICFSVMDTGIGIAKENMPKLFQSFVQIDSRLSRRYAGTG 966

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            LGL++V+  I +HGG V + S     +     +P K+
Sbjct: 967  LGLALVQRTIEIHGGRVDVESEVGQGSCFRVTLPIKQ 1003


>gi|260174306|ref|ZP_05760718.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315922574|ref|ZP_07918814.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696449|gb|EFS33284.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 713

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 132/233 (56%), Gaps = 5/233 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L E  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++   + 
Sbjct: 325 DITTRKQVELELIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL--AETDEIE 382

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y+  +  ++ +LLNL++DILD++ ++AG ++L    + +  L  EV  + + K H
Sbjct: 383 LRQA-YMSLVQENNELLLNLISDILDISKIEAGTIELTTGWVDVPQLCREVIATFSHKKH 441

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  + ++           AD+ R++Q+ S  ++NA+ F++KGS  +     D+G   F V
Sbjct: 442 DGAVELRFDESSPQIVIDADKNRIMQVLSNFMTNALKFTTKGSITLSYTLNDDGQVRFCV 501

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + G  IP + C  +FNRFV      Q  G GLGLSI +S +   GG + + S
Sbjct: 502 TDTGKGIPAEQCHDIFNRFVKLDSFVQ--GAGLGLSICQSLVERMGGKIGVES 552


>gi|224540067|ref|ZP_03680606.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518298|gb|EEF87403.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1039

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + E+ LT   E   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 654 ITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 710

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++T+LL L++DILDL+ ++AG ++LNYS I LN+L+ E+++    ++  
Sbjct: 711 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKT 770

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           + ++++ +          ++ RL Q+   +++NA+ F+ KGS       R+N +  F V 
Sbjct: 771 DAVKLEFVEPAGPCMAYTEKNRLSQLMINLVTNAIKFTEKGSIRFGYEMREN-ELYFYVA 829

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  +++F RFV      Q  G GLGLSI ++ ++  GG + + S +   +T 
Sbjct: 830 DTGCGIPKDKQQNIFGRFVKLNSFAQ--GTGLGLSICKTLMDHMGGRIGVESEEGKGSTF 887

Query: 785 NCRIPSK 791
              +P K
Sbjct: 888 WFTLPYK 894


>gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 818

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 147/264 (55%), Gaps = 16/264 (6%)

Query: 541 TFVNVTDSVRA-----ERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNII 588
            F +++D +R+     E+ +TEK E       AL++A+ +K+ F+ ++S+ELR+PL  II
Sbjct: 264 AFNDMSDKLRSSYAMLEQRITEKTEHLQKAVSALKRANRMKSEFLANMSHELRTPLNAII 323

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF ++LK    G LN++Q  +V+ I +S   LL ++NDILDL+ ++AG M+L Y + +++
Sbjct: 324 GFAEVLKDKLCGELNAEQEDFVKDIHSSGRHLLQMINDILDLSKIEAGKMELQYESFLVS 383

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D + +V   +     +  +++K +    +    ADR +  QI   +LSN++ F+ +  T+
Sbjct: 384 DAIEDVYTILKGLAKKKQLQLKTVIQEDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTI 443

Query: 709 ILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
              AA  +G    SV ++G  I PED  K VF  F    ++   +  G GLGL++    +
Sbjct: 444 TTNAAIVDGKMQVSVSDSGIGIKPEDREK-VFKEFWQADSSFSRKYEGTGLGLALTRRIV 502

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            +HGG + + S     +T    IP
Sbjct: 503 EMHGGKIWLKSEYGKGSTFYFTIP 526


>gi|118590259|ref|ZP_01547662.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
 gi|118437231|gb|EAV43869.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
          Length = 518

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 141/267 (52%), Gaps = 11/267 (4%)

Query: 533 LPNAQTMLTFVNVTDS--VRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNI 587
           L NA TML +    D   V  E A    +EA R+A+     K+ F+  +S+ELR+PL  I
Sbjct: 222 LKNANTMLEYRADKDHLIVELESANAMSDEARRRAEAANLAKSRFLATMSHELRTPLNAI 281

Query: 588 IGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +GF++++K   LG +++K  Q Y E I  S   LLNL+N+ILDL+ ++AG  +L+   I 
Sbjct: 282 LGFSEIMKDEVLGKMHNKNYQSYAEDIHGSGQHLLNLINEILDLSRIEAGRHELHEEPIF 341

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L+D++ E    +  +     I +    +  L    AD + L Q+   +LSNA+ F+    
Sbjct: 342 LDDIVEECGTMMKVRAKAKTISLHHTHEPDLPRVWADERALRQVVLNLLSNAVKFTPVNG 401

Query: 707 TVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
            V +K     D G ++ S+K+ G  IPED   +V   F   +H  +    G GLGLSIV+
Sbjct: 402 EVWIKVGPTSDGGQYV-SIKDTGPGIPEDEIPTVLEAFGQGSHAIKTAEPGTGLGLSIVQ 460

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
           + +N+H G  S+ S     T +   +P
Sbjct: 461 ALVNMHDGKFSLKSKPGEGTEVIVTLP 487


>gi|298482247|ref|ZP_07000434.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271534|gb|EFI13108.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 391

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 164/297 (55%), Gaps = 24/297 (8%)

Query: 502 AIITSFDDERK--SLQGTLELLS--------DSVLEYSIIPLPNAQTM-LTFVNVTDSVR 550
           AI  +F+  R    L+ TL +++        D+V+  S   L   + M +T  +VT   +
Sbjct: 89  AIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGSYFLLNEEENMVITVHDVTRRKQ 148

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQ 608
           AE  L    E   KAD  K++F+ ++S+E+R+PL  I GF ++L     GS N+++  +Q
Sbjct: 149 AENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFAEVL-----GSANTEEEKAQ 203

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E I  ++ +L+ LVNDILD++ ++AG ++   +T+ +N LL++++Q    +++E    
Sbjct: 204 YQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLLLSDLQQLFQMRVNEAGEN 263

Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++I++    S +   DR R+ Q+ S    NA+ F+ +GS  I   ARD  +  F VK+ 
Sbjct: 264 IQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGSIRIGYEARDT-ELYFYVKDT 322

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           G+ IP +    VF RFV       ++G GLGLSI ++ +   GG +   S + EG T
Sbjct: 323 GAGIPAEKLPDVFERFVK--LNKDKKGAGLGLSISQTIVAKLGGQIGADSVEGEGST 377


>gi|154245571|ref|YP_001416529.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
 gi|154159656|gb|ABS66872.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
          Length = 770

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 139/242 (57%), Gaps = 5/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           AE+   E+N+A   A+  K+ F+ ++S+ELR+PL  IIGF++++++   G L S K ++Y
Sbjct: 513 AEKYSEERNKA-EDANRAKSEFLANMSHELRTPLNAIIGFSEIMESGMFGPLGSEKYAEY 571

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S T LL+++NDILD++ ++AG M+L    + L+D++ +  +  A    E NI +
Sbjct: 572 CTDIKGSGTYLLDVINDILDMSKIEAGRMQLEVEDLALDDIIADALRVTAVNGDEKNIAM 631

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + +   L +   DR+ L QI   +LSNA+ F+ +G  + +KA  +    + ++++ G  
Sbjct: 632 TMAAAPNL-AIKGDRRALKQILLNLLSNAVKFTPEGGNIAVKARINGAAAVIAIEDTGIG 690

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I +D    +   F  V +      +G GLGL+I +S + LHGG + I S +   TT+  R
Sbjct: 691 IAKDALARIGRPFEQVESQFTKTHKGSGLGLAIAKSLVELHGGAMRIRSVEGRGTTVIVR 750

Query: 788 IP 789
           +P
Sbjct: 751 LP 752


>gi|172035136|ref|YP_001801637.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171696590|gb|ACB49571.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 835

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 18/312 (5%)

Query: 487 CSRYYNE-SDGWDLFAAIIT-----SFDDERK-SLQGTLELLSDSVLEYSIIPL-----P 534
           C ++ N  +D WD   + +      SF DE    +Q +     D V ++   PL     P
Sbjct: 242 CDQWLNPPTDNWDFPLSSLPNDSPESFVDEDSLDIQPSPIPDQDKVWQFIKCPLTTDKLP 301

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              ++    +VT   +  + L  KN  L + + +K+ F+  +S+EL+SPLT ++G + LL
Sbjct: 302 IPISIFVATDVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLL 361

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +  K+G LN +Q  Y + I  S   L+ LVND+LDL  ++ G +KL++S + + ++ +  
Sbjct: 362 QEEKIGDLNPRQVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIQEICHRA 421

Query: 655 KQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             SIA K     +  +   +  +  L   +AD  RL Q+   +L NAM F+  G    LK
Sbjct: 422 YHSIAEKYKGKSDKPLDFSLDIEVGLHQLLADELRLHQMLVHLLDNAMKFTQTGGKFGLK 481

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
            +R      F+V + G  IPE+    +F +F  + N    Q  G GLGL + +     HG
Sbjct: 482 VSRWEDWLAFTVWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHG 541

Query: 770 GHVS-ISSSDEG 780
           G +S +S + +G
Sbjct: 542 GDISFVSKAGQG 553


>gi|260175189|ref|ZP_05761601.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315923421|ref|ZP_07919661.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313697296|gb|EFS34131.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 391

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 176/331 (53%), Gaps = 24/331 (7%)

Query: 469 TEENRLSPGTHIRNIAAT---CSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLS- 522
           TEE R+      RN  A    C   ++      +  AI  +F+  R    L+ TL +++ 
Sbjct: 54  TEEKRVGDLLQCRNALAAEGGCG-THSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTS 112

Query: 523 -------DSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                  D+V+  S   L   + M +T  +VT   +AE+ L    E   KAD   ++F+ 
Sbjct: 113 DNTTVECDAVISGSYFLLNEEENMVITVHDVTRRKQAEKELQLAKEKAEKADISNSAFLA 172

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I GF ++L ++   +   +++QY E I  ++ +L+ LVNDILD++ ++
Sbjct: 173 NMSHEIRTPLNAITGFAEVLGSA---TTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIE 229

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFS 692
           AG ++   +T+ +N LL++++Q    ++++   +I++I++    S +   DR R+ Q+ S
Sbjct: 230 AGTLEFVQTTVDVNQLLSDLQQLFQMRVNDAGGKIQIIAEPSCSSCMIQTDRNRVAQVLS 289

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
               NA+ F+ +GS  +   AR N +  F VK+ G+ IP +    VF RFV       ++
Sbjct: 290 NFAGNAIKFTHEGSIRLGYEAR-NTELYFYVKDTGAGIPAEKLPDVFERFVK--LNKDKK 346

Query: 753 GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           G GLGLSI ++ +   GG +   S + EG T
Sbjct: 347 GAGLGLSISQTIVAKLGGQIGADSVEGEGST 377


>gi|319405334|emb|CBI78952.1| two-component sensor histidine kinase [Bartonella sp. AR 15-3]
          Length = 769

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 194/410 (47%), Gaps = 48/410 (11%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F   T Q DL  +         + I+++SE   ++  +GR+ +SN  F       +  L 
Sbjct: 374 FVEQTAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQ 424

Query: 476 PGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525
            G     + A      S Y  + D      +I  + D      +ER++  G L  +   +
Sbjct: 425 SGIERATVEAMSRPAISEYPLKIDETGNLTSIRQTADGYWLKINERRTQDGGLVCVGTDI 484

Query: 526 LE---------------YSII-----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            E               +S I        NAQ   T V      +  ++L E+ E    A
Sbjct: 485 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVE-----KLNKSLQEEKERAESA 539

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624
           ++ K+ F+ ++S+ELR+PL  I+GF++++  S  G L S++  +YV  I  S T LL L+
Sbjct: 540 NKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYVHDIHNSGTHLLTLI 599

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILD++ ++AG   L+   I L  +++E  +++  +     I +    + KL + V D 
Sbjct: 600 NDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKISLTTNIEQKLHANV-DC 658

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           + + QIF  ++SNA+ F+  G ++ ++A + N + IFS+K+ G  IP++  K +   F  
Sbjct: 659 RAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQ 718

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V N       G GLGL+I  S + LH G + I+S +   T +   +P ++
Sbjct: 719 VENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTIIMPIQQ 768


>gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 729

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 167/307 (54%), Gaps = 19/307 (6%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--- 552
           G  +F A     DD    ++     +S  ++EY+  P      ++   ++T+  RAE   
Sbjct: 431 GHAIFEATFRREDDTTIPVE-----ISARMIEYNDKPT----ILVVARDITERKRAEEEL 481

Query: 553 ----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
               + L++ NE L+  D++K+ F+ +VS+EL++PLT+IIG+T+LL    LG L  +Q  
Sbjct: 482 RKYAQDLSKANEELKSLDKMKDEFLSNVSHELKTPLTSIIGYTELLNDGSLGELGEEQKH 541

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             E +  ++  L  LV+ +L L+   AG ++ ++ T+ +++L +++ + +  +  E N+ 
Sbjct: 542 AEETVMRNTKRLQRLVDSLLYLSRTQAGTVQYDFETLNISELTDQIIEDLQIQTEEKNLE 601

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +    +  L     DR +L  +F+ I+ N++ F+ KG ++ + A +++     ++K+ G 
Sbjct: 602 MIKKIEPDLPQIKGDRDKLTDMFTNIIDNSIKFTPKGGSITIFANKEDEYIHINIKDTGI 661

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
            IP+DM  ++F RF  + ++ + +  G GLGL I ++ +  H G + + S  +G  T ++
Sbjct: 662 GIPKDMIDNLFQRFYQIDSSQKRKYGGTGLGLYITKTIVEAHEGEIWVESEGKGKGTEVH 721

Query: 786 CRIPSKE 792
            ++P  E
Sbjct: 722 IKLPVAE 728


>gi|91774051|ref|YP_566743.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713066|gb|ABE52993.1| bvgS precursor-like multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 682

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 135/245 (55%), Gaps = 4/245 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N   M    ++T   + E+ L    ++   A+  KN+F+  +S++LR+PL  IIG++DLL
Sbjct: 410 NRAVMYIMRDITKRKQQEQDLLNSRQSAEVANHSKNTFLASMSHDLRTPLNAIIGYSDLL 469

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            T  +G LN KQ +Y   I  S  +LLN++NDIL+++ ++AG M+L  S   + ++L EV
Sbjct: 470 LTESVGDLNEKQIKYTNNILISGRLLLNIINDILNISKIEAGKMQLRPSENDIQEILKEV 529

Query: 655 KQSIATKMH-ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + + TK+    N  I  I +G +    ADR +++ I   ++ NA+  S K   + +   
Sbjct: 530 NELVKTKVQISKNELIFNIENG-IEKIYADRIKIISILQNLVDNAIKHSPKNEKIFINIT 588

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
             + +    VKN G  I ++M K +F  FV        + RG GLGL+IV+ +++LH G 
Sbjct: 589 TKDKNLQICVKNKGKGITQEMQKEIFTPFVQVEKFISKEYRGTGLGLAIVKHYVHLHNGK 648

Query: 772 VSISS 776
           + I S
Sbjct: 649 IWIES 653


>gi|255011543|ref|ZP_05283669.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 3_1_12]
          Length = 557

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 143/242 (59%), Gaps = 9/242 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +LT  ++T     E AL E  E    AD  K++F+ ++S+E+R+PL  I+GF++LL  
Sbjct: 159 RMVLTVHDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAA 218

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + +N LL +++Q
Sbjct: 219 A---TEEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQ 275

Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
               K+  ++  +++I++  L S +  +DR R+ Q+ S  +SNA+ F+++GS  I     
Sbjct: 276 LFHMKIGYDS-PVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTEGSIRIGYKPC 334

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +NG   F V + GS I  D    VF+RFV    +  + G GLGLSI ++ +N  GG +  
Sbjct: 335 ENG-LRFYVTDTGSGISADKLGGVFDRFVR--LQSDKNGTGLGLSICKTIVNKLGGEIGA 391

Query: 775 SS 776
            S
Sbjct: 392 ES 393


>gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 632

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 137/252 (54%), Gaps = 2/252 (0%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T +  AE++L         A+  K  F+ +VS+ELR+PL  IIGF+ +L T+K G+L
Sbjct: 379 IDITKNKNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILSTNKSGNL 438

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N K+ +YV  I  S   LL L+N ILD++ + AG   L    +   ++  ++K  I   +
Sbjct: 439 NDKELKYVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIKPFIDPLI 498

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N+  + I D    +  AD+ ++LQI   +L NA+ F+ +  ++ + A     +F  S
Sbjct: 499 AKKNLSFECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAINARCIGDNFQVS 558

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IPE   K +F+ F  V ++   +  G GLGL++V+ +I +HGG + + S    
Sbjct: 559 VKDTGIGIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIWVESEVGK 618

Query: 781 VTTINCRIPSKE 792
            +T    IP  +
Sbjct: 619 GSTFTFVIPQNQ 630


>gi|218461897|ref|ZP_03501988.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Kim 5]
          Length = 149

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/139 (46%), Positives = 94/139 (67%)

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           ++V   IA ++ E+ + +++ +   LGS VAD QRL QI  K+LSNA +FS +GS++ L+
Sbjct: 1   DDVSMQIADRLQESGVALEITAPAYLGSIVADPQRLKQILLKLLSNAANFSPEGSSISLE 60

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             R+  DF+FSV++ G  I  DM  +VF+RF + A  G+R G GLGLSIV+SF++LH G 
Sbjct: 61  CQREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKRGGAGLGLSIVDSFVSLHHGD 120

Query: 772 VSISSSDEGVTTINCRIPS 790
           V+I S     TT+ CRIPS
Sbjct: 121 VTIDSEPGKGTTVVCRIPS 139


>gi|313149369|ref|ZP_07811562.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138136|gb|EFR55496.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 398

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 142/240 (59%), Gaps = 9/240 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +LT  ++T     E AL E  E    AD  K++F+ ++S+E+R+PL  I+GF++LL  + 
Sbjct: 2   VLTVHDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAAA- 60

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + +N LL +++Q  
Sbjct: 61  --TEEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLF 118

Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             K+  ++  +++I++  L S +  +DR R+ Q+ S  +SNA+ F+++GS  I     +N
Sbjct: 119 HMKIGYDS-PVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTEGSIRIGYKPCEN 177

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G   F V + GS I  D    VF+RFV    +  + G GLGLSI ++ +N  GG +   S
Sbjct: 178 G-LRFYVTDTGSGISADKLGGVFDRFVR--LQSDKNGTGLGLSICKTIVNKLGGEIGAES 234


>gi|312113732|ref|YP_004011328.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218861|gb|ADP70229.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
          Length = 630

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 194/429 (45%), Gaps = 51/429 (11%)

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG--ETIDHLSEGVAVFGPDGRIKLSNP 461
           ++S P+G     FE L V +D       L       E ++ L   +A++  + R+ L N 
Sbjct: 203 ISSTPQGAP--AFEGLLVPIDPSQSPQGLEGFPSLPEIVESLPISIAIWDRENRLVLCNR 260

Query: 462 AFRSLWKTEENRLSPGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFDDERKSL--- 514
            FR L++       PGT    I A      ++   E  G      ++  F  + + L   
Sbjct: 261 KFRQLYRVSAAAALPGTSYEAIQAQTQEAIAQRPPEGRG------VVGRFQLQERQLGDG 314

Query: 515 -----------QGTL-----ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE------ 552
                      +GTL     ++      ++ +  L   Q M   V+  +  R +      
Sbjct: 315 TWLQIGEYWTGEGTLVSFGTDITMQKQTQHRV--LEREQQMRARVDGFEQSRRQLEIQAR 372

Query: 553 --RALTEK--NEALRK--ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605
             R L E    E +R   A++ K+ F+ +VS+ELR+PL  IIGF+++++   LG + N K
Sbjct: 373 QLRELAESYNEEKIRAEAANQAKSEFLANVSHELRTPLNAIIGFSEMMRDGVLGPIGNPK 432

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              YV+ I  S   LL ++NDILD++ ++AG   L+     ++D+  E    ++    E 
Sbjct: 433 YESYVKDIHNSGRYLLEMINDILDMSKIEAGRWTLSPEWFTMSDVFQECLSVVSPVAMEG 492

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+ +    +  + S   DR+ L Q+   +LSNA+ F+ +   V L+A R  G    ++ +
Sbjct: 493 NVELSQSGNTSI-SLYGDRRALKQVLINLLSNAVKFTPQDGKVSLRAYRYRGSIRIAIAD 551

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+     +   F  VSN      +G GLGL+I  S + +HGG + I S     TT
Sbjct: 552 TGVGIPKHDLGRLGRPFEQVSNQLTKGHKGTGLGLAISRSLVEMHGGKLDIKSRVGEGTT 611

Query: 784 INCRIPSKE 792
           + C +P ++
Sbjct: 612 VTCILPVQD 620


>gi|49475278|ref|YP_033319.1| two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
 gi|49238084|emb|CAF27291.1| Two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
          Length = 773

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 192/407 (47%), Gaps = 50/407 (12%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q DL  +         + I+++SE   ++  +GR+ +SN  F       +  L PG  
Sbjct: 382 TAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQVLQPGIQ 432

Query: 480 IRNIAATCSRYYNE----SDGWDLFAAIITSFD------DERKSLQGTLELLSDSVLE-- 527
              + A      NE     DG     +I  + D      +ER++  G L  +   + E  
Sbjct: 433 RATVEAMARPAINEYPLKDDGTGNLTSIRQTADGCWLKINERRTQDGGLVCIGTDISELK 492

Query: 528 -------------YSII-----PLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEI 568
                        +S I        NAQ   T V  +  S++AE+   E+ E+  KA   
Sbjct: 493 QQQEKFEDSERRLFSFIQELKRARGNAQQRATEVEKLNKSLKAEK---ERAESANKA--- 546

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDI 627
           K+ F+ ++S+ELR+PL  I+GF+D++  S  G L S++ Q Y+  I  S   LL L+NDI
Sbjct: 547 KSEFLANMSHELRTPLNAILGFSDIMLQSTFGPLGSQRYQEYMHDIYNSGNHLLTLINDI 606

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ ++AG   L+   I L  +++E  +++  +  E NI +      +L + V D + +
Sbjct: 607 LDMSKIEAGRFTLDRKNIDLEPIISEAVRTLTPQAQEKNISVSTNIAPELHAEV-DGRAM 665

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            QIF  ++SNA+ F+  G ++ + A +   + +  +K+ G  IP+   K +   F  V N
Sbjct: 666 KQIFLNLISNAVKFTPSGGSINVCAFKKKNNLVCRIKDTGVGIPQSAIKKLGQPFEQVEN 725

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                  G GLGL+I  S + LH G + I S +   TT+   +P K+
Sbjct: 726 QLTKTHTGSGLGLAISRSLLELHKGKLEIISKEMKGTTVTITMPIKQ 772


>gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
 gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
          Length = 1352

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 132/247 (53%), Gaps = 6/247 (2%)

Query: 551  AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            AER   L+  N  L ++  +K+ F+ ++S+ELR+PL  I+  ++ L     G LN +Q  
Sbjct: 832  AERTAELSRANAELARSVRVKDEFLANMSHELRTPLNTILTLSESLLEELRGPLNERQRA 891

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             ++ I  S   LL L+ND+LD+A ++AG M+L    + ++D+       I  +  +  IR
Sbjct: 892  SIQLIETSGRHLLTLINDVLDVAKIEAGRMELVKEVVAVSDVCESSLVLIKEQAAKKQIR 951

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNN 726
            +  + D     F+AD +RL QI   +LSNA+ F+ +G +V L+   D   G   F+V + 
Sbjct: 952  LHCVIDAPHTRFLADPRRLKQILVNLLSNAVKFTPEGGSVELRVTTDTAQGTIAFAVSDT 1011

Query: 727  GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I  D    +F  FV   ++   +  G GLGL++V   ++LHGG VS++S+    +  
Sbjct: 1012 GIGIAPDQLPRLFQPFVQLDSSLTREHEGSGLGLALVRRLVDLHGGSVSVTSTPGSGSVF 1071

Query: 785  NCRIPSK 791
               +P +
Sbjct: 1072 TVTLPYQ 1078


>gi|225174413|ref|ZP_03728412.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170198|gb|EEG78993.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 558

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 139/241 (57%), Gaps = 3/241 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +++L   N+ L +   +K+ F+  +++ELR+PLT+I+ F +LL     G +N +Q + +
Sbjct: 308 GKKSLAVLNQKLSENSRLKSEFMATMTHELRTPLTSIVAFCELLLDEIPGPINEEQQENL 367

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S+  L+ L+NDILD+A  +AG ++L+   + LND+   V++++++  ++N +R+ 
Sbjct: 368 MDIKTSAQQLMLLINDILDMAKFEAGHLRLDKENVDLNDVFRAVRRTMSSIAYQNGVRLD 427

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V S   L     D +RL Q+ S +++NA+  S +G  V + A  DN     SV++NG  I
Sbjct: 428 V-SAVDLPLVYGDPERLRQMLSNLIANAVKHSKEGGYVHIYAKADNEFAAISVEDNGDGI 486

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P ++   +F +F       +RR  G GLGL++V++   L  G++S++S     TT    I
Sbjct: 487 PPELMPHIFEKFRQGEDSLKRRRNGTGLGLALVKTLAELQDGNISVNSEVGEGTTFTIHI 546

Query: 789 P 789
           P
Sbjct: 547 P 547


>gi|294495111|ref|YP_003541604.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666110|gb|ADE35959.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 793

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 133/236 (56%), Gaps = 3/236 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  RAE+AL +      + D +K+ F+ ++S+ELR+PL ++IGF+D+L     G LN
Sbjct: 532 DITERNRAEQALLKGKLIAEENDRMKSEFITNMSHELRTPLNSVIGFSDVLLKEIKGELN 591

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  IS S   LL L+NDILDL+ ++ G M+L      LN +L+EV+   + +  
Sbjct: 592 DSQKKYISNISKSGRHLLELINDILDLSKIEEGKMELQCEDFDLNSILSEVESIFSPQAA 651

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           + +I ++ +   K+     D+ ++ Q+   +L+NA+ F+ K   + + A  ++ + I  S
Sbjct: 652 KKDINLQFVLSEKIPRIKGDKIKIKQVIFNLLTNAIKFTPKNGAISVIAKENDDNIIEVS 711

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           V + G  IPE   + VF+ F+       R   G G+GLS+ + F+ +H G   + S
Sbjct: 712 VSDTGIGIPEAKLEDVFDPFIQVDASTSRNYGGTGVGLSLAKKFVQMHDGKFCVES 767


>gi|307309665|ref|ZP_07589317.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|307319462|ref|ZP_07598889.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306894834|gb|EFN25593.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306899877|gb|EFN30500.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 775

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 196/430 (45%), Gaps = 49/430 (11%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            VI T + R   I +  ++T Q  L  +Y    +   + I+  SE   ++    R+ + N
Sbjct: 355 QVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCN 414

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----------- 509
             ++  W+  ++ L PGT    + A  +R   E    D   +  +   +           
Sbjct: 415 THYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQI 474

Query: 510 -ERKSLQGTLELLSDSV-----------------------LEYSIIPLPNAQTMLTFVNV 545
            ER++  G L  +   +                       L  S + L   +  L+  N 
Sbjct: 475 NERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANA 534

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS- 604
                 ERA     EA   A+  K+ F+ ++S+ELR+PL  I+GF+++L+    G L S 
Sbjct: 535 NYQAEKERA-----EA---ANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSE 586

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K  +Y   I  S   LLN++NDILD++ ++AG M++    I L  L+ E  +        
Sbjct: 587 KYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAER 646

Query: 665 NNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            NIR ++ IS G   +  ADR+ + Q+   +LSNA+ F+++G  + L+A +  G    ++
Sbjct: 647 KNIRVVQQISSGL--TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTI 704

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++G  IP+   + +   F  V + +   + G GLGL+I  S   LHGG + I S++   
Sbjct: 705 ADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVG 764

Query: 782 TTINCRIPSK 791
           T I+ RIP +
Sbjct: 765 TIISVRIPDR 774


>gi|15964778|ref|NP_385131.1| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|15073956|emb|CAC45597.1| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
          Length = 772

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 196/430 (45%), Gaps = 49/430 (11%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            VI T + R   I +  ++T Q  L  +Y    +   + I+  SE   ++    R+ + N
Sbjct: 352 QVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCN 411

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----------- 509
             ++  W+  ++ L PGT    + A  +R   E    D   +  +   +           
Sbjct: 412 THYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQI 471

Query: 510 -ERKSLQGTLELLSDSV-----------------------LEYSIIPLPNAQTMLTFVNV 545
            ER++  G L  +   +                       L  S + L   +  L+  N 
Sbjct: 472 NERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANA 531

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS- 604
                 ERA     EA   A+  K+ F+ ++S+ELR+PL  I+GF+++L+    G L S 
Sbjct: 532 NYQAEKERA-----EA---ANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSE 583

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K  +Y   I  S   LLN++NDILD++ ++AG M++    I L  L+ E  +        
Sbjct: 584 KYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAER 643

Query: 665 NNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            NIR ++ IS G   +  ADR+ + Q+   +LSNA+ F+++G  + L+A +  G    ++
Sbjct: 644 KNIRVVQQISSGL--TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTI 701

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++G  IP+   + +   F  V + +   + G GLGL+I  S   LHGG + I S++   
Sbjct: 702 ADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVG 761

Query: 782 TTINCRIPSK 791
           T I+ RIP +
Sbjct: 762 TIISVRIPDR 771


>gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1134

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 135/246 (54%), Gaps = 5/246 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + + AL  K   L  A   K+ F+ ++S+ELR+PL +++    LL  +K G+L  KQ +Y
Sbjct: 420 KTQVALETKANELELASRYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNLTDKQIEY 479

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I ++   LL L+NDILDL+ V+AG ++++ + I L +LL  ++Q       +  +  
Sbjct: 480 AKTIHSAGADLLTLINDILDLSKVEAGQVEIHANDISLTNLLETIEQKFRPIAEQQELNF 539

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           ++ I++  L +   D QRL QI + +LSNA  F+ +G+ + L   +   DFI FSV + G
Sbjct: 540 QITIAEESLTTLYTDGQRLKQILNNLLSNAFKFTQQGN-IKLIVQKSEADFISFSVSDTG 598

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP++    +F  F       QRR  G GLGLSI   F  L GG +++ S +   +T  
Sbjct: 599 IGIPQEKQNIIFEAFQQVDGSNQRRYGGTGLGLSISRQFARLLGGEITLHSEEGKGSTFT 658

Query: 786 CRIPSK 791
             +P K
Sbjct: 659 FSLPEK 664


>gi|319898572|ref|YP_004158665.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
 gi|319402536|emb|CBI76079.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
          Length = 769

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 193/410 (47%), Gaps = 48/410 (11%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F   T Q DL  +         + I+++SE   ++   GR+ +SN  F       +  L 
Sbjct: 374 FAEQTAQADLRIR---------DAIENISESFVLWDSAGRLVMSNSKFCEYAAIPKQMLQ 424

Query: 476 PGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525
            G     + A      S Y  + D      +I  + D      +ER++  G L  +   +
Sbjct: 425 SGIERATVEAMSRPAISEYPLKVDEAGNLTSIRQTADGYWLKINERRTQDGGLVCIGTDI 484

Query: 526 LE---------------YSII-----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            E               +S I        NAQ   T V      +  ++L E+ E    A
Sbjct: 485 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVE-----KLNKSLQEEKEKAESA 539

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624
           ++ K+ F+ ++S+ELR+PL  I+GF++++  S  G L S++  +Y+  I  S T LL L+
Sbjct: 540 NKAKSEFLANMSHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLI 599

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILD++ ++AG   L+   I L  +++E  +++  +     I +    + KL + V D 
Sbjct: 600 NDILDMSKIEAGRFTLDCKNINLEPIISETIRTLTPQAQAKKISLTTNIEPKLHADV-DC 658

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           + + QIF  ++SNA+ F+  G ++ ++A + N + IFS+K+ G  IP++  K +   F  
Sbjct: 659 RAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGIPKEAIKKLGKPFEQ 718

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V N       G GLGL+I  S + LH G + I+S +   T +   +P ++
Sbjct: 719 VENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTITMPIQQ 768


>gi|29347984|ref|NP_811487.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339886|gb|AAO77681.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 419

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 171/325 (52%), Gaps = 27/325 (8%)

Query: 470 EENRLSPGTHIRN--IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSV 525
           EE R+    H RN  +A  C ++  +     +  +I  +F ++R  K L  +++LLS+  
Sbjct: 79  EEKRVGDLLHCRNAIVAGECGKH-EQCKLCCIRTSISKAFYEKRSFKKLDASMQLLSED- 136

Query: 526 LEYSIIPLP------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            E ++IP                + +LT  +VT+    +R L  + E    AD++K++F+
Sbjct: 137 -EKTVIPCDVSVSGTYLKINGEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFI 195

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  IIGF+ L+ T+   +   ++  Y + IS ++  LL LVNDI DL+ +
Sbjct: 196 ANMSHEVRTPLNAIIGFSGLMATA---TSEEEKKMYTDIISENNERLLRLVNDIFDLSQI 252

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIF 691
           DAG++   YS    NDLL E++     +++EN + + ++ +  L   +  +++QR++Q+ 
Sbjct: 253 DAGVLNFVYSEFDANDLLRELEGLFGMRLNENPL-VTLVCEAHLEPIMMHSEKQRIIQVL 311

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + +L NAM F+  G            +  F V + G  IP++  + +F+RF       Q 
Sbjct: 312 TNLLHNAMKFTKTGEIRFGCRMEGTDEVYFYVSDTGIGIPKEEQEKIFSRFTKLDREMQ- 370

Query: 752 RGVGLGLSIVESFINLHGGHVSISS 776
            G GLGL++ ++ ++  GG   + S
Sbjct: 371 -GTGLGLTLSQTIVHNLGGRFGVES 394


>gi|21228620|ref|NP_634542.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907118|gb|AAM32214.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1]
          Length = 702

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 2/248 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   +AE AL     A   A+  K+ F+ ++S+EL++PL +IIGF+DLL     G LN
Sbjct: 434 DITARKKAEEALINAKTAAEAANRTKSEFLTNMSHELKTPLNSIIGFSDLLIEGIAGPLN 493

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQS+Y  +IS++   LLN++N IL+L+ V++   +L      +N+ +N+   +   ++ 
Sbjct: 494 EKQSRYAGFISSNGKNLLNIINGILELSKVESEGDELTLQEFSVNESINKSISTALPQIL 553

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + NI++   SD       AD  +  QI   +L+NA+ F+ +   + + + ++ G     V
Sbjct: 554 KKNIKLNYNSDSDPLCIFADENKFRQIMESLLNNAVKFTPEDGLIDISSKQEGGIVTIKV 613

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  IPED    +F  F+       R   G GLGL++ + ++ +HGG++S+ S     
Sbjct: 614 KDTGIGIPEDSLDKIFKPFIQLESSLSRTFEGTGLGLTLAKKYVEMHGGNISVESKTGKG 673

Query: 782 TTINCRIP 789
           ++    +P
Sbjct: 674 SSFKVELP 681


>gi|319406908|emb|CBI80543.1| two-component sensor histidine kinase [Bartonella sp. 1-1C]
          Length = 769

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 194/410 (47%), Gaps = 48/410 (11%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F   T + DL  +         + I+++SE   ++  +GR+ +SN  F       +  L 
Sbjct: 374 FAEQTARADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYASIPKQMLQ 424

Query: 476 PGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525
            G     + A      S Y  + D      +I  + D      +ER++  G L  +   +
Sbjct: 425 SGIERATVEAMSRPAISEYPLKIDESGNLTSIRQTADGYWLKINERRTQDGGLVCIGTDI 484

Query: 526 LE---------------YSII-----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            E               +S I        NAQ   T V      +  ++L E+ E    A
Sbjct: 485 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVE-----KLNKSLQEEKERAESA 539

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624
           ++ K+ F+ ++S+ELR+PL  I+GF++++  S  G L S++  +Y+  I  S T LL L+
Sbjct: 540 NKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLI 599

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILD++ ++AG   L+   I L  +++E  +++  +     I +    + KL + V D 
Sbjct: 600 NDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKISLTTNIEQKLHADV-DC 658

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           + + QIF  ++SNA+ F+  G ++ ++A + N + IFS+K+ G  IP++  K +   F  
Sbjct: 659 RAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQ 718

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V N       G GLGL+I  S + LH G + I+S +   T +   +P ++
Sbjct: 719 VENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTIIMPIQQ 768


>gi|239997233|ref|ZP_04717757.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii ATCC 27126]
          Length = 927

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 142/249 (57%), Gaps = 5/249 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F+    S++A  +L ++   L + D+ K+ F+  +S+ELRSPL +I+G+TDL     +G+
Sbjct: 527 FIPYALSLKA--SLDKQISKLEELDKAKDQFLASISHELRSPLNSIVGWTDL-ALMDVGN 583

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           ++ + +  +  I  +++    L+NDILDL+ + +G MKL+  ++ +   ++EV +S    
Sbjct: 584 VD-RMTDALGVIKRAASTQAALINDILDLSRIISGTMKLSTHSLNIAGSISEVAKSFEAG 642

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               NI++ +  +      + D  R+ Q+ + +LSNA+ F+SKG TV ++  R++ +++F
Sbjct: 643 FASKNIQLSINCEDDHTQILGDNLRIKQVINNLLSNALKFTSKGGTVHVRGRREHSNYLF 702

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+NG  +  +    VF RF    +   + G+GLGLSIV+S + +HGG +   S     
Sbjct: 703 RVKDNGKGMTREQLSHVFERFYQGKNEHNKHGLGLGLSIVKSLVEMHGGEIYAESDGPNT 762

Query: 782 -TTINCRIP 789
            TT    +P
Sbjct: 763 GTTFYVTLP 771


>gi|67925200|ref|ZP_00518568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67852959|gb|EAM48350.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 840

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 20/304 (6%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTF 542
           ++Y  ES G  L        +D+R+S Q       D V ++   PL   +     ++   
Sbjct: 265 AKYSQESSGNCLID------NDDRESRQICE---PDKVWQFIKCPLTTDKLEAPISIFVA 315

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT   +  + L  KN  L + + +K+ F+  +S+EL+SPLT ++G + LL+  K+G+L
Sbjct: 316 TDVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGNL 375

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           NS+Q  Y + I  S   L+ LVND+LDL  ++ G +KL+++ + + ++      SI  K 
Sbjct: 376 NSRQVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFNPVNIREICQRAYHSITEKY 435

Query: 663 H---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
               E  +   +  + +L   +AD  RL Q+   +L NAM F+  G  + LK +R +   
Sbjct: 436 QSKTEKPVDFSLEIEPELEHLLADELRLHQMLVHLLDNAMKFTQTGGKIGLKVSRWSDWL 495

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISS 776
            F+V + G  IPE+    +F +F  + N    Q  G GLGL + +     HGG +S +S 
Sbjct: 496 AFNVWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSK 555

Query: 777 SDEG 780
           + +G
Sbjct: 556 AGQG 559


>gi|332142950|ref|YP_004428688.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|332143005|ref|YP_004428743.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552972|gb|AEA99690.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327553027|gb|AEA99745.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 908

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 141/251 (56%), Gaps = 9/251 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LKTSKL 599
           F+    S++A  +L ++   L + D+ K+ F+  +S+ELRSPL +I+G+TDL  +  S +
Sbjct: 507 FIPYALSLKA--SLDKQISKLEELDKAKDQFLASISHELRSPLNSIVGWTDLALMDVSNV 564

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                + +  +  I  +++    L+NDILDL+ + +G MKL+  ++ +   ++EV +S  
Sbjct: 565 ----DRMTDALGVIKRAASTQAALINDILDLSRIISGTMKLSTHSLNIASSISEVAKSFE 620

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 NI++ +  + +    + D  R+ Q+ + +LSNA+ F+SKG TV ++  R++ ++
Sbjct: 621 AGFASKNIQLSISCEDEHTQILGDNLRIKQVINNLLSNALKFTSKGGTVHVRGRREHSNY 680

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
              VK+NG  + ++    VF RF        + G+GLGLSIV+S + +HGG + + S   
Sbjct: 681 TLRVKDNGKGMTQEQVAHVFERFYQGKDSHNKHGLGLGLSIVKSLVEMHGGEIQVHSDGP 740

Query: 780 GV-TTINCRIP 789
              T+ N  +P
Sbjct: 741 NTGTSFNITLP 751


>gi|158424746|ref|YP_001526038.1| PAS protein [Azorhizobium caulinodans ORS 571]
 gi|158331635|dbj|BAF89120.1| PAS protein [Azorhizobium caulinodans ORS 571]
          Length = 763

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 136/243 (55%), Gaps = 7/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           AE+   EK  A   A+  K+ F+ ++S+ELR+PL  IIGF++++++   G L S K  +Y
Sbjct: 514 AEKYSEEKTRA-EDANRAKSEFLANMSHELRTPLNAIIGFSEIMESGMFGPLGSDKYREY 572

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S T LL+++NDILD++ ++AG M+L    I L++++ +  +  A K  E  + +
Sbjct: 573 CSDIKGSGTYLLDVINDILDMSKIEAGRMQLELEDIRLDEIIADAMRVTAVKGDEKQLDM 632

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
              +  G++     DR+ L QI   +LSNA+ F+ +G  V ++A  + G  + ++++ G 
Sbjct: 633 TAQVGAGQV--MRGDRRALKQILLNLLSNAVKFTPEGGHVAVRAKVNGGAAVIAIEDTGI 690

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP      +   F  V +      +G GLGL+I +S   LHGG + I S++   TT+  
Sbjct: 691 GIPRHALNKIGRPFEQVESQFTKTHKGSGLGLAIAKSLAELHGGSMRIRSTEGAGTTVVV 750

Query: 787 RIP 789
           R+P
Sbjct: 751 RLP 753


>gi|153806065|ref|ZP_01958733.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185]
 gi|149130742|gb|EDM21948.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185]
          Length = 391

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 167/297 (56%), Gaps = 24/297 (8%)

Query: 502 AIITSFDDER--KSLQGTLELLS--------DSVLEYSIIPLPNAQTM-LTFVNVTDSVR 550
           AI  +F+  R   +L+ TL +++        ++V+  S   L   + M LT  ++T   +
Sbjct: 89  AIRQAFEQRRGFTNLEATLNMVTSENQTVACEAVISGSYFLLNEEENMVLTVHDITHLKQ 148

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQ 608
            ER L    E    AD  K++F+ ++S+E+R+PL  I GF +++     GS N+++  +Q
Sbjct: 149 VERELKVAKEKAENADIAKSAFLANMSHEIRTPLNAITGFAEVM-----GSANTEEEKTQ 203

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E I  ++ +L+ LVNDILD++ ++AG ++  YST+ +N LL+++++    ++++   +
Sbjct: 204 YQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVYSTVDINLLLSDLQRLFQMRINDAGGK 263

Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +++I++  L S +   DR R+ Q+ S  + NA+ F+ +G+  I   A+D  +  F VK+ 
Sbjct: 264 VQIIAEPSLSSCLIQTDRNRVAQVISNFVGNAIKFTREGNIRIGYEAKDT-ELYFYVKDT 322

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           G+ IP +   +VF RFV       ++G GLGLSI ++ +    G +   S   EG T
Sbjct: 323 GTGIPAEKLSNVFGRFVK--LNKDQKGAGLGLSISQTIVGKLSGQIGADSIEGEGST 377


>gi|163759100|ref|ZP_02166186.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162283504|gb|EDQ33789.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 795

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 132/237 (55%), Gaps = 7/237 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYIS 614
           TE+ EA  +A   K+ F+ ++S+ELR+PL  IIGF+++L+    G L S K  +Y + I 
Sbjct: 537 TERAEAASRA---KSEFLANMSHELRTPLNAIIGFSEVLQARMFGPLGSDKYGEYADDIH 593

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD+A ++AG M+L    + L  LL E  + +A +  + +IR+     
Sbjct: 594 NSGIHLLTVINDILDMAKIEAGQMQLEREDVDLAPLLKETLRLVAIQAEQKDIRVDQRIS 653

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            KL S  ADR+ + QI   +LSNA+ F+  G  ++++A + +     ++++ G  IP+ +
Sbjct: 654 AKL-SLNADRRAMKQILLNLLSNAVKFTEPGGKILVRARKTSCAVTLTIEDTGIGIPKAL 712

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +   F  V N       G GLGL+I  S   LHGG + + S +   T ++ R+P
Sbjct: 713 LNRIGQPFEQVQNQFSKSTGGSGLGLAISRSLAELHGGAMKVRSIEGMGTIVSVRVP 769


>gi|170739808|ref|YP_001768463.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168194082|gb|ACA16029.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 975

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 143/280 (51%), Gaps = 14/280 (5%)

Query: 524 SVLEYSII--PLPNAQTMLTFVN-------VTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           +VLE+     P P+   +    N       V +  RAE +L +  EA   A   K+SF+ 
Sbjct: 423 AVLEFFACDAPPPDPALLRVMTNIGAQLGRVIERKRAEESLRQAKEAAEDASRAKSSFLA 482

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+ELR+PL  IIGFT L+      +L +KQ + +E I ASS  LL+L+N ILDLA V+
Sbjct: 483 NMSHELRTPLNAIIGFTRLVMRRAKEALPTKQFENLEKILASSEHLLSLINSILDLAKVE 542

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG M++  S   L  +L+   +++   +    +R+    +        D ++L QI   +
Sbjct: 543 AGRMEVKASEFALEPVLDLCLRTVEPLIKSEGVRLVRDVEDPPTMLRTDEEKLRQILINL 602

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           LSNA+ F+  GS  +    R  G+ + F+V + G  IP++   ++F+ F  V N+     
Sbjct: 603 LSNAIKFTEAGSVTL--RVRSAGEHVEFAVTDTGIGIPQEALSAIFDEFHQVDNSATRSH 660

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL+I      L GGH+ + S     +T    IP +
Sbjct: 661 SGTGLGLAISHRLARLLGGHIDVESRVGQGSTFTLSIPPR 700


>gi|110634292|ref|YP_674500.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110285276|gb|ABG63335.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 1038

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 133/245 (54%), Gaps = 5/245 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L  V   +  RA+ AL  K   L +A   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 333 QTQLLEVQRDELSRAQGALQAKARDLEEASRYKSEFLANMSHELRTPLNSLLIMARLLAD 392

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++ G+L S Q ++ E I  +   LLNL+NDILD++ ++AG ++L    + +  +L +++ 
Sbjct: 393 NREGNLTSDQVKFAETIETAGNDLLNLINDILDISKIEAGHIELQIERVRVEPMLEKLRA 452

Query: 657 SIATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +  +   E   N RI+ +  G      +D QR+ Q+    LSNA+ F+ KG  V+  A  
Sbjct: 453 TFQSSASEKGLNFRIETVP-GTPDRIESDPQRIEQVLKNFLSNAIKFTEKGEVVLSVAEE 511

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           ++G   F+V++ G  IPED  +++F  F        R+  G GLGLSI      + GG +
Sbjct: 512 EDGRIAFAVRDTGIGIPEDQQQAIFEAFRQADGSINRKYGGTGLGLSISSELTRVLGGEI 571

Query: 773 SISSS 777
            + S+
Sbjct: 572 RVEST 576


>gi|304393603|ref|ZP_07375531.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
           R2A130]
 gi|303294610|gb|EFL88982.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
           R2A130]
          Length = 814

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 192/391 (49%), Gaps = 48/391 (12%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA---------TCS 488
           E ID++SE   ++    R+ L N  ++ L+    + +  G   +++AA           +
Sbjct: 404 EAIDNISEAFVLWDAKERMVLCNGKYQQLFNLPSSAIRHGVTKQDVAAIRKAPVMRSQVN 463

Query: 489 RYYNESDGWDLFAAIITSFDD-------ERKSLQGTL--------------ELLSDSVLE 527
              N+    + F A     DD       ER +L G                  L DS  E
Sbjct: 464 TDRNQKHHSNTFEA---QLDDGRWFQISERPTLDGGAVSVGTDITQIKRNQSKLEDSERE 520

Query: 528 Y--SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELR 581
           +  +I+ L    Q ++ F N  D    +R L   +E  ++ADE    K+ F+ ++S+ELR
Sbjct: 521 HLATIVELRKMQQNLVAFANEADD---QRLLA--DEQRKQADEANKSKSQFLANMSHELR 575

Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL  IIGF+D+++    G L N K ++Y   I +S   LL ++ND+LD++ ++AG M++
Sbjct: 576 TPLNAIIGFSDIMREGMFGPLGNEKYTEYANDIRSSGGFLLGVINDVLDMSKIEAGRMQI 635

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               + ++DLL E  + IA +  +  +++    +  L   +ADR+ + Q+   +LSNA+ 
Sbjct: 636 YPEELAVSDLLQETLRIIAAQADDGELQVTTEIETGL-DIIADRRAVKQVLINLLSNAVK 694

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F+ KG ++ + A R + +    + ++G  I +D  + +   F   A    R   G GLGL
Sbjct: 695 FTPKGGSIQVSARRLDDNVEMEILDSGIGISQDALERIGLPFEQAASELTRDHVGSGLGL 754

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I +S   LHGG V ISS +   TT+  R+P
Sbjct: 755 AIAKSLAELHGGSVDISSIEGIGTTVLVRLP 785


>gi|227821363|ref|YP_002825333.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227340362|gb|ACP24580.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 775

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 144/268 (53%), Gaps = 14/268 (5%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           L  S I L   +  L+  N       ERA     EA   A+  K+ F+ ++S+ELR+PL 
Sbjct: 515 LSASRITLERQKAELSVANANYQAEKERA-----EA---ANRAKSEFLANMSHELRTPLN 566

Query: 586 NIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I+GF+++L+    G L S K  +Y   I  S   LLN++NDILD++ ++AG M++    
Sbjct: 567 AILGFSEILQNQMFGPLGSEKYDEYSRDIHESGKHLLNVINDILDMSKIEAGHMRITRER 626

Query: 645 IVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           I L  L+ E  +       + NIR ++ IS G   +  ADR+ + Q+   +LSNA+ F++
Sbjct: 627 IDLAPLIEETLRFTTIPAEQKNIRVVQEISSGL--TMFADRRAMKQVLLNLLSNAVKFTN 684

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           +G  + L+A +  G    ++ ++G  IP    + + + F  V + +   + G GLGL+I 
Sbjct: 685 EGGRISLRARKVRGAVTLTIADSGIGIPRYALQKIGHPFEQVQSQYAKSKGGSGLGLAIS 744

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
            S   LHGG + I S+++  T I+ RIP
Sbjct: 745 RSLTRLHGGRMKIHSAEKVGTIISVRIP 772


>gi|120612634|ref|YP_972312.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120591098|gb|ABM34538.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1159

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 3/232 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RA+ AL++K   L +A + K+ F+ ++S+ELR+PL + +    LL  +K G+L  +Q +
Sbjct: 454 LRAQDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTEEQVR 513

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E I  +   LLNL+NDILDLA ++AG   +    + +   +  + + +     E N+ 
Sbjct: 514 YAETIHGAGNDLLNLINDILDLAKIEAGQATVEIEPVNVARAVQSIVEPLRPLAREKNLA 573

Query: 669 I-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
              V+  G       D QRL QI   +LSNA+ F+ +G   +  AA+ +G   FSV++ G
Sbjct: 574 FSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTERGEVALRVAAQPDGRVAFSVRDTG 633

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             IPE   K +F  F        R+  G GLGLSI      L GG VS+ S+
Sbjct: 634 IGIPEHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQST 685


>gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 732

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 144/250 (57%), Gaps = 5/250 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+   AE+A+ E       A++ K+ F+ ++S+ELR+PL +IIGF+D+L     G L
Sbjct: 480 LDITEKKEAEKAIIEAKGMAEAANQTKSQFLANMSHELRTPLNSIIGFSDVLLEEAFGKL 539

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N KQ +Y   I+ S   LL+++NDILDL+ ++AG M+LN     L ++++E+K ++   +
Sbjct: 540 NEKQKKYTHNINTSGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNTLEPLV 599

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +  + + + +  +   + AD+ ++ Q+   +LSNA+ F+ +   + +       +   S
Sbjct: 600 KKKQLILDLDTSLEYPVY-ADKLKIKQVLYNLLSNAIKFTPEKGKIAIDIDCGEEEITIS 658

Query: 723 VKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           V ++G  IP +    +F  F    S+++R Q +G GLGL++V++ I +HGG + + S   
Sbjct: 659 VSDSGIGIPPEEQDKLFQPFRQIDSDSNR-QYQGTGLGLALVKNIIEMHGGQIWVESEAG 717

Query: 780 GVTTINCRIP 789
             +T    +P
Sbjct: 718 KGSTFKFTLP 727


>gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 1046

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 138/258 (53%), Gaps = 10/258 (3%)

Query: 531 IPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           IP+ N    +T +     ++T   R+E  L +      +A+  K+ F+ +VS+ELR+PL 
Sbjct: 461 IPIKNEDGRITGILKTGLDITAHRRSEEKLIQAKLEAEEANNSKSEFLANVSHELRTPLN 520

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +IIGF+D+L     G LN KQ +YV  IS S   LL L+NDILDL+ V+AG M+L+YS  
Sbjct: 521 SIIGFSDILIEKVFGELNEKQFRYVNNISTSGKHLLVLINDILDLSKVEAGKMELHYSEF 580

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            ++ +  EVK  +   +    + +    +    +  ADR RL+QI   ++SNA+ F+  G
Sbjct: 581 SIDPVFEEVKAVLFPLIQAKPLEVTFNVEPDFTTLEADRGRLIQILYNLISNAIKFTPNG 640

Query: 706 STVILKAARDNGDFIFSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVE 762
             V +         + SV + G  I  ED  K    F +  ++  R Q  G GLGL++V+
Sbjct: 641 GKVSVYCKESGNRALISVIDTGIGISAEDQVKLFQPFTQLDASTSR-QYCGTGLGLALVK 699

Query: 763 SFINLHGGHVSISSSDEG 780
             +NLH G + +  SD G
Sbjct: 700 KIVNLHQGDIWV-ESDPG 716


>gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
 gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
          Length = 1034

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 142/248 (57%), Gaps = 17/248 (6%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEI----------KNSFVQHVSYELRSPLTNIIGFT 591
             +++TD  +AE+ L    +A+ +A+E+          K+ F+ ++S+ELR+PL ++IGF+
Sbjct: 778  LMDITDVKKAEKQL---EDAVLRANEMAIQAEYANKTKSQFLANMSHELRTPLNSVIGFS 834

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            D+L     G LN  Q +Y+  IS     LL+L+NDILDL+ ++AG M+L    + L+ + 
Sbjct: 835  DILLKEIKGELNDSQKKYISNISNGGRHLLDLINDILDLSKIEAGKMELACEDLNLDSVF 894

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +E++  I+ +  + +I +++     +    AD+ ++ QI   +LSNA+ F+ +   V + 
Sbjct: 895  SEIESVISPQAQKKSIDLEISKPADI-EINADKSKIKQIIFNLLSNAIKFTDENGKVSMS 953

Query: 712  AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            A   + D +  +VK+ G  IPED    +F+ F+       R+  G GLGL +V+ ++ +H
Sbjct: 954  AGEVDRDQVEITVKDTGIGIPEDKLDKIFDPFMQADSSTSRKYGGTGLGLPLVKEYVEMH 1013

Query: 769  GGHVSISS 776
            GG + + S
Sbjct: 1014 GGEILVES 1021


>gi|319900835|ref|YP_004160563.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415866|gb|ADV42977.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 375

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 142/240 (59%), Gaps = 8/240 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T  ++T   + E  L +  E    AD  K+ F+ ++S+E+R+PL  I+GF++LL ++ 
Sbjct: 126 VITVHDITRLKQVEVELRQAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLASA- 184

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S   +++Q++  +  ++ +L  L+ DILDL+ ++AG ++  +S I +N L+++++Q  
Sbjct: 185 --SSEEEKAQFLGIVQNNNEMLQQLIADILDLSKIEAGTLEFVFSDIDINQLMSDLEQQF 242

Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             ++ E    ++VI +      V   DR RL Q+ +  ++NAM F+ +GS  +     ++
Sbjct: 243 RMRLKEQGSAVQVIRETPPEGCVMHMDRNRLAQVIANFMTNAMKFTDEGSITLGYRTNED 302

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G F F VK+ GS IP++   ++F+RFV      +++G GLGLSI ++ ++  GG + + S
Sbjct: 303 G-FYFYVKDTGSGIPKEKLPTIFDRFVKLEQ--EKKGTGLGLSICQTIVSKLGGKIGVDS 359


>gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 725

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 145/259 (55%), Gaps = 8/259 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+ + +++T+  ++E  + +       ++  K+ F+ ++S+ELR+PL  +IGF D+L   
Sbjct: 465 TIESILDITEVKKSEEKMLQAKILAENSNRSKSEFLSNMSHELRTPLNAVIGFADILNEE 524

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G LN KQ ++V  IS S   LL L+N+ILDL+ ++AG M+   +   + +  +E+K  
Sbjct: 525 GFGPLNKKQKRFVGNISTSGKHLLKLINEILDLSKIEAGKMEFKCTEFSVKEKFDEIKDI 584

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +     +  IRI+  I DG + +  +D  + +Q+   ++SNA+ F+ +G  V + +AR N
Sbjct: 585 LFPVFSKKKIRIEFEIGDG-ITTIYSDEGKFVQVLYNLVSNAIKFTEEGGFVKV-SARKN 642

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           GD +  SVK+ G  I E+    +F+ FV   S + R Q  G GLGL++V+  + L GG +
Sbjct: 643 GDMLQLSVKDTGIGITEEDLMKIFHPFVQVDSFSTR-QYEGTGLGLALVDQMVQLMGGEI 701

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S     +   C IP K
Sbjct: 702 CVFSQPGIGSEFICMIPLK 720


>gi|22298442|ref|NP_681689.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
 gi|22294622|dbj|BAC08451.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
          Length = 729

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 131/242 (54%), Gaps = 4/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL E   A+  A  IKN F+  +S+ELR+PLT +IG +  L    LG L +KQ +Y+E 
Sbjct: 344 QALREALSAMEAAHRIKNDFLATMSHELRTPLTCVIGVSATLLRWPLGPLTAKQREYLEI 403

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIK 670
           I  S T LL L+N ILDL+  + G  +L+ S   +  L  +  + +  + H +  N+R +
Sbjct: 404 IHESGTHLLELINSILDLSEAELGRSQLHRSAFSIRQLCADCLEVVKPQAHRHQVNLRHQ 463

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           ++       F  D +R+ QI   +LSNA+ F+     VIL+A     + IF V++ G  I
Sbjct: 464 LMIPPTRDRFWGDYRRIQQILINLLSNAIKFTPAMGEVILRAWWKEDELIFQVQDTGIGI 523

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P  +   +F +F  + ++      G GLGL++ + +++LH G + + S++   +T    +
Sbjct: 524 PAHLQSLLFQKFQQLDSSFGRAYTGAGLGLALTKQWVDLHHGWIDVDSTEGKGSTFTVGL 583

Query: 789 PS 790
           P+
Sbjct: 584 PA 585


>gi|110633259|ref|YP_673467.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110284243|gb|ABG62302.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 774

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 135/241 (56%), Gaps = 6/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611
           R    + E    A+  K+ F+ ++S+ELR+PL  IIGF++L++    G L S++ Q YV 
Sbjct: 527 RKYMRETERAESANRAKSEFLANMSHELRTPLNAIIGFSELMQQGLFGPLGSERYQEYVN 586

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S T LL ++NDILD++ ++AG   ++  +I L++++ E  + +  +  + NI +  
Sbjct: 587 DIYSSGTYLLGVINDILDMSKIEAGQFSIHRESIDLSEVIRETMRVVTLQAGKKNIELTS 646

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                L S  ADR+ + QI   +L NA+ F+ +G  V L+A   +   + ++K+ G  IP
Sbjct: 647 DVPASL-SLHADRRAVKQILINLLFNAVKFTGQGGRVTLRARVVSNSLMLTIKDTGCGIP 705

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRI 788
            +  K +   F  V N +     G GLGL+I  S   LHGG + I S+ EGV TI + R+
Sbjct: 706 REALKKLGRPFEQVENQYSRSHNGSGLGLAISRSLTELHGGALRIRST-EGVGTIVSIRL 764

Query: 789 P 789
           P
Sbjct: 765 P 765


>gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 701

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 193/389 (49%), Gaps = 47/389 (12%)

Query: 427 TKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN- 482
           T Y+ L++ +    +T+  L  G+A+   +GRI  +NPA+  LW+ E+       ++   
Sbjct: 325 TSYSELLEARMQLQQTLASLPLGLALTDGEGRILRTNPAWYQLWQIEQPADETALYLPWD 384

Query: 483 -IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSV--LEYSIIPLPNA 536
            +     R  +  +  D FA      D+       TLEL   LS+ +  L+    P+ +A
Sbjct: 385 ILPLLLKRLSHPLELTDFFAECQAQPDE-------TLELALRLSEPLQDLKLRSTPVKDA 437

Query: 537 QTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           Q  +T   V + D  R            R+ D++KN FV  VS+ELR+PLT+I+G+T+LL
Sbjct: 438 QHQITGRLVVIEDVTRE-----------REIDKMKNEFVSVVSHELRTPLTSILGYTELL 486

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   +  ++ ++V+ +   +  L  +V+D+L+L+ +DAG +KLN   + L+ ++ E+
Sbjct: 487 LAREFKPV--ERQEFVQTVYDQANQLSKMVDDLLNLSRLDAGQIKLNRWVVSLHQIIREI 544

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---- 710
            + +   + E +  +  I +G +    AD+ ++ QI + +LSNA+ +S  G  V L    
Sbjct: 545 TKQLNETLSEKHRLLIDIPEG-IPPIFADKDKVRQILTNLLSNAIKYSPNGGQVALIVRE 603

Query: 711 --------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
                       +    I +V++ G  I E+    +F RF  V N+   +  G GLGLSI
Sbjct: 604 LRKVPPGAPPLPNERSVIIAVRDQGMGISEEDLPKLFTRFFRVDNSTTRKIGGTGLGLSI 663

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++ I LHGG +  +S+    TT    +P
Sbjct: 664 TKALIELHGGRIWATSTLGRGTTFWVTLP 692


>gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 769

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 194/410 (47%), Gaps = 48/410 (11%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F   T Q DL  +         + I+++SE   ++  +GR+ +SN  F       +  L 
Sbjct: 374 FAEQTAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQ 424

Query: 476 PGTHIRNIAA----TCSRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSV 525
            G     + A      S Y  + D      +I  + +      +ER++  G L  +   +
Sbjct: 425 SGIERATVEAMSRPAISEYPLKIDESGNLTSIRQTANGYWLKINERRTQDGGLVCVGTDI 484

Query: 526 LE---------------YSII-----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            E               +S I        NAQ   T V      +  ++L E+ E    A
Sbjct: 485 SELKQQQEKFEDSERRLFSFIQELKRARGNAQQRATEVE-----KLNKSLQEEKERAESA 539

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624
           ++ K+ F+ ++S+ELR+PL  I+GF++++  S  G L S++  +Y+  I  S T LL L+
Sbjct: 540 NKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLI 599

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILD++ ++AG   L+   I L  +++E  +++  +     I +    + KL + V D 
Sbjct: 600 NDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKISLTTNIEQKLHADV-DC 658

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           + + QIF  ++SNA+ F+  G ++ ++A + N + IFS+K+ G  IP++  K +   F  
Sbjct: 659 RAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQ 718

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V N       G GLGL+I  S + LH G + I+S +   T +   +P ++
Sbjct: 719 VENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEGKGTIVTIIMPIQQ 768


>gi|239831458|ref|ZP_04679787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823725|gb|EEQ95293.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 783

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 6/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R   ++ E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 529 RKYGQEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 588

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI +  
Sbjct: 589 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRMISLQADEKNIAVNT 648

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 649 RIEDAM--QLYADRRAIKQVLINLLSNAVKFTSYGGQITVRARKTGSALFMTIQDTGVGI 706

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   K +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 707 PKSAIKKIGQPFEQVENQFTKTHTGSGLGLAITRSLAELHGGWLRIRSTEGVGTVVSVCI 766

Query: 789 PSKE 792
           P ++
Sbjct: 767 PDRK 770


>gi|16331796|ref|NP_442524.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001756|dbj|BAA10594.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 806

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 150/272 (55%), Gaps = 24/272 (8%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+  +AE  L   N+ L KA ++K+ F+ ++S+ELR+PL +I+G  + L+    G
Sbjct: 390 TIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYG 449

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE----VKQ 656
            LN KQ Q +E +  S   LL+L+NDILDL+ ++AG M L+ +   ++ L+N     V+Q
Sbjct: 450 PLNGKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQ 509

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---- 712
               K  + N+  ++I +  L   + D++RL Q+   +L+NA+ F+ +G  V+++A    
Sbjct: 510 FAIQK--QINLSSEIIPN--LPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIK 565

Query: 713 ------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
                 ++      F+V + G  I  D   ++F  FV       RR  G GLGLS+V+  
Sbjct: 566 EQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKI 625

Query: 765 INLHGGHVSISSS-DEGV---TTINCRIPSKE 792
           + LHGG V+++S  +EG     TI C    K+
Sbjct: 626 VELHGGSVTVTSKLNEGSRFKITIPCVFQDKD 657


>gi|212694788|ref|ZP_03302916.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
 gi|212662642|gb|EEB23216.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
          Length = 1045

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 11/237 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+ K+ A  +++ +K++F+ ++S+E+R+PL  IIGF+++L T++      ++ +Y+  I 
Sbjct: 673 LSAKDRA-EESNRLKSAFLANMSHEIRTPLNAIIGFSNILATAEE---EQEKQEYINIIE 728

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +++T+LL L++DILDL+ ++AG +  +YS + LND+L+E++  +  +       I++I+ 
Sbjct: 729 SNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVV--RYRTETCGIQLIAH 786

Query: 675 GKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             L S     ++ RL+Q+ + +L+NA  F+S+GS +         +  F VK+ G  IP 
Sbjct: 787 KGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLCGRELYFYVKDTGCGIPA 845

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D   S+F RFV      Q  G GLGLSI ++ +   GGH+ + S +E  +T    IP
Sbjct: 846 DKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGHIGVESEEEKGSTFWFTIP 900


>gi|153009989|ref|YP_001371204.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561877|gb|ABS15375.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 784

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 4/243 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R   ++ E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 529 RKYGQEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 588

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI +  
Sbjct: 589 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREQIDLCPLINETVRMISLQADEKNIAVNT 648

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +  +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP
Sbjct: 649 RIEEAM-QLYADRRAIKQVLINLLSNAVKFTSYGGQITVRARKTGSALFMTIQDTGVGIP 707

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   K +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  IP
Sbjct: 708 KSAIKKIGQPFEQVENQFTKTHTGSGLGLAITRSLAELHGGWLRIRSTEGVGTVVSVCIP 767

Query: 790 SKE 792
            ++
Sbjct: 768 DRK 770


>gi|163848580|ref|YP_001636624.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222526515|ref|YP_002570986.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163669869|gb|ABY36235.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450394|gb|ACM54660.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 726

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 194/404 (48%), Gaps = 70/404 (17%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ Q   ET Y+      G+    L  G+A+   +GR+  +NPA+  +W+ +     P  
Sbjct: 347 MSYQAAYETSYHL-----GQVFSSLPIGLALLDLNGRVIRANPAWNQVWRLDAQPQRPSF 401

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDE----------RKSLQGTLEL---LSDSV 525
           ++               G DL   ++   +D           +++   T E    L +  
Sbjct: 402 YV---------------GIDLVEHLLARLNDPFRLSEFCDLGQRTPDQTFETSLQLRNPY 446

Query: 526 LEYSIIPLP--NAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            E  ++ +P  ++Q  LT     V+D  R            R++D +K+ F+  VS+ELR
Sbjct: 447 QELHVLSVPTRDSQQQLTGRLWVVSDRTRE-----------RESDRLKDEFIGIVSHELR 495

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT+I+G+T++L   +     S Q ++++ +S  +  L  +V D+LD++ ++AG++KLN
Sbjct: 496 TPLTSILGYTEILLNRQDLDYES-QREFLQTVSNEAERLFKMVKDLLDVSRLEAGVVKLN 554

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAM 699
              + L  ++ E    +  ++H   I  K++ D +  L    ADR ++ QI   +LSNA+
Sbjct: 555 RWAVGLWQVIEE----LTLQLHTQLIHHKLLIDARTPLPPVFADRDKVKQIIFNLLSNAI 610

Query: 700 DFSSKGSTVILKAARDNGD-----------FIFSVKNNGSSI-PEDMCKSVFNRF--VSN 745
            +S +GS + L   R N D            +  V++ G  I PED  + +F RF  V N
Sbjct: 611 KYSPEGSEIQLTVRRANADDLPATHPPGQWMLIVVRDEGIGIKPEDQAR-LFERFQRVDN 669

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++  Q+ GVGLGL I    + LHGG + + S +   ++ +  +P
Sbjct: 670 SNTRQKSGVGLGLYISRLLVELHGGRIWVKSVEGSGSSFSFTLP 713


>gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
 gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
          Length = 1447

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 138/249 (55%), Gaps = 5/249 (2%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+   +E  L EK  A   A+  KN F+ ++S+ELR+PL +IIGF+D+L     G LN
Sbjct: 1189 DITEKKISENLLHEKQMA-EIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGELN 1247

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             KQ + +  IS+S   LLNL+N ILDL+ ++A  M+LNY    L   L  ++  +     
Sbjct: 1248 RKQLRAIGNISSSGKHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVAD 1307

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
            + NI I++  D +L    AD ++  +I   ++ NA+ FS + S V +  AR NG+ +  +
Sbjct: 1308 KKNIDIEIDMDTELTKICADEEKFTRIMYNLVDNAIKFSYENSLVKI-GARKNGNLVEIT 1366

Query: 723  VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  I  +    +F  F  V++    + +G GLGLS+V+  +NLHGG+V   S    
Sbjct: 1367 VTDAGIGIKAEDQHKLFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGE 1426

Query: 781  VTTINCRIP 789
             +T    IP
Sbjct: 1427 GSTFAFAIP 1435


>gi|254416897|ref|ZP_05030645.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176261|gb|EDX71277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1138

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 132/257 (51%), Gaps = 12/257 (4%)

Query: 534 PNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           PN+Q  L    + T   +  + LT KN  L + + +K+ F+ ++S+EL++PLT ++G + 
Sbjct: 432 PNSQLWLVMAQDATTQQQVAQELTAKNADLVQLNRLKDEFLAYISHELKTPLTAVLGLST 491

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LLK   LG LN +Q++Y   I  +   L+ +VNDILDL  ++ G ++L    + +  L +
Sbjct: 492 LLKDQLLGELNERQARYARLIYQNGRQLMAVVNDILDLTRMETGQLELTLEPVQIQSLCD 551

Query: 653 EVKQSIATKMHENN---------IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              Q       +NN         I   +  +  L + +AD  RL Q+ + +LSNA+ F+ 
Sbjct: 552 RAYQQALQVYSDNNPNHEGATPDISFVLDIEPGLDTIIADELRLRQMLAHLLSNALKFTD 611

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
             +TV LK    +G   F++ + G  IPED    +F +F  +      Q  G GLGL + 
Sbjct: 612 SQNTVGLKVNNQDGWIAFTIWDTGIGIPEDKQHLIFQKFQQLEEPLTRQFEGTGLGLVLT 671

Query: 762 ESFINLHGGHVSISSSD 778
           +    LHGG +S  S +
Sbjct: 672 QRLARLHGGDISFISKN 688


>gi|319784548|ref|YP_004144024.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170436|gb|ADV13974.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 773

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/242 (34%), Positives = 140/242 (57%), Gaps = 11/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYIS 614
           TE+ EA  +A   K+ F+ ++S+ELR+PL  IIGF++L++    G L S++  +Y   I+
Sbjct: 529 TERAEAANRA---KSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSERYEEYATDIN 585

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL ++NDILD++ ++AG   L+   I L  L++E  + ++ +  +  I ++  I+
Sbjct: 586 SSGKYLLGVINDILDMSKIEAGQFSLDREEIDLGPLISETVRVVSLQAAQKAISVETRIA 645

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D    + VADR+ + QI   +LSNA+ F+  G  + ++A   +G  + ++++NG  IP++
Sbjct: 646 DAL--TLVADRRAIKQIVINLLSNAVKFTGHGGHISVRARNTSGALVLTIEDNGCGIPKE 703

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPS 790
               +   F  V N       G GLGL+I  S   L GG + I SS EGV TI + RIP 
Sbjct: 704 ALGKLGRPFEQVQNQFSKSHAGSGLGLAISRSLAELQGGALKIRSS-EGVGTIVSVRIPV 762

Query: 791 KE 792
           K+
Sbjct: 763 KK 764


>gi|56750891|ref|YP_171592.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81299455|ref|YP_399663.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
 gi|8953946|gb|AAF82192.1|AF258464_1 circadian input kinase [Synechococcus elongatus PCC 7942]
 gi|56685850|dbj|BAD79072.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81168336|gb|ABB56676.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
          Length = 754

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 4/227 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+ELR+PLT +IG +  L     G L  +Q +Y++ I  S   LL L+NDIL
Sbjct: 384 KGEFLATMSHELRTPLTCVIGMSSTLLRWAFGPLTERQREYIKAIHDSGEHLLELINDIL 443

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRIKVISDGKLGSFVADRQR 686
           DL+ ++AG   L      L+ L  +   ++  K  + E  + + +  + ++  F AD +R
Sbjct: 444 DLSQIEAGKAALQVRPFSLSRLATQTLNTLQEKARLGEIQLMLDLQLNNRVDVFRADPKR 503

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           L QI   +LSNA+ F+    TV L+  R+    IF V + G  IPE     +F +F  + 
Sbjct: 504 LRQILINLLSNAVKFTEPQGTVFLRVWREGDRAIFQVSDTGIGIPESEQAQLFQKFQQLD 563

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + R Q  G GLGL++ +  + LHGGH+ I S+    +T    IP +
Sbjct: 564 TSIRRQYGGTGLGLALTKQLVELHGGHIQIESTVGQGSTFTVWIPEQ 610


>gi|306840195|ref|ZP_07472975.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
 gi|306404726|gb|EFM61025.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
          Length = 769

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 514 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 573

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 574 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 633

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 634 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 691

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 692 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 751

Query: 789 PSK 791
           P +
Sbjct: 752 PDR 754


>gi|46202135|ref|ZP_00053708.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 663

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 177/364 (48%), Gaps = 23/364 (6%)

Query: 440 IDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT-----HIRNIAA--TCSRYY 491
           ID++ +GVAVF  D   I L+  A R L    +  ++PGT      +  +AA  T   ++
Sbjct: 295 IDNMPQGVAVFASDDALIALNESAIRML-GLPKAEITPGTIDISLFMALLAANDTPPGHH 353

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSV 549
           +     DL  +I       R+  +   E  + S  ++E     +P    +L+F ++TD  
Sbjct: 354 SAQLTADLSESI-------RERPEMVFEHFTPSGLIMEVRSSSMPGGGLILSFTDITDRK 406

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608
             E+ L E  +   + +  KN+F+ ++S+ELR+PL  IIGF++++K    G L     + 
Sbjct: 407 HIEQTLREAKDEAERGNRTKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRA 466

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV+ I  S   LL L+NDILD++  +AG+  L  + + + DL+    + +  +     I 
Sbjct: 467 YVDDIHESGMHLLELINDILDMSKAEAGMTDLMETAVHVPDLIRAAIRLLNRRAENAAIS 526

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +       L + +AD +RL QI   + SNA+ F+  G  V + A      F+  V + G 
Sbjct: 527 LTEDLPPNLPTLLADERRLRQIILNLGSNAVKFTDDGGAVTIGAKVTEAGFVIRVADTGI 586

Query: 729 SI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            + PED+ + V   FV    R  R+  G GLGL + ++ +  HGG +++ S     T + 
Sbjct: 587 GMTPEDVQR-VMEPFVQADTRLSRKYEGSGLGLPLAKALVIAHGGTLNLDSQPGRGTVVT 645

Query: 786 CRIP 789
              P
Sbjct: 646 VTFP 649


>gi|86356937|ref|YP_468829.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86281039|gb|ABC90102.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 767

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 227/502 (45%), Gaps = 52/502 (10%)

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-PEQ----------LNWKTWK-EN 377
           F NR F   W   +  +   P +D+ L F  +A  + P+            N  + + + 
Sbjct: 273 FENREF--FWSRSMYDMLGLPGSDKTLGFGEAARLMHPDDGGLYEIARAIANGHSGQVDQ 330

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           IF +  +   +   W     Q   VI +++ R   I +  ++T Q  L  +Y    +   
Sbjct: 331 IFRMRHAGGHY--VWMRARAQ---VIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRLA 385

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH--IRNIAAT---CSRYYN 492
           + I+  SE   ++  + R+ + N  F+  +   ++ L PGT   I N AA      R   
Sbjct: 386 DAIECTSEAFVLWDKNDRLVMCNTHFQEAYGLPDSVLVPGTERSIVNAAAARPVIERRVA 445

Query: 493 ESDGWDLFAAIITSFD-----DERKSLQGT-------LELL---------SDSVLEYSII 531
           ++DG      +  + +     +ER++  G        + L+         S+  L  +I 
Sbjct: 446 DADGSGRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIG 505

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            L  ++  L       S        EK  A   A++ K+ F+ ++S+ELR+PL  I+GF+
Sbjct: 506 DLSASRQTLELQKAELSTANANYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFS 564

Query: 592 DLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           ++L+    G L S K  +Y   I  S   LLN++NDILD++ ++AG +KL+   I L  L
Sbjct: 565 EILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLKLHRERIDLVPL 624

Query: 651 LNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + E  +  A    E NI I + IS G   +  ADR+ + Q+   +LSNA+ F+  G  + 
Sbjct: 625 IEESLRFTAIPAAEKNIVIEQRISSGL--TLTADRRAMKQVLLNLLSNAVKFTDDGGRIA 682

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           ++  R +G    ++ + G  IP      +   F  V + +   + G GLGL+I  S  +L
Sbjct: 683 VRTRRVDGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTSL 742

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG + I S +   T I+ RIP
Sbjct: 743 HGGRMKIRSREAVGTVISLRIP 764


>gi|83311949|ref|YP_422213.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946790|dbj|BAE51654.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 676

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 179/379 (47%), Gaps = 42/379 (11%)

Query: 434 KVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           ++QG  ID++ +GVAVF  D   I L+  A R L    +  ++PGT   +I+        
Sbjct: 303 RLQG-IIDNMPQGVAVFASDDALIALNESAVRML-GLPQAEITPGTI--DIS-------- 350

Query: 493 ESDGWDLFAAIITSFDDE--RKSLQGTLELL----------------SDSVLEYSIIPLP 534
                 LF A++ + D    R S Q T +L                 S  ++E     +P
Sbjct: 351 ------LFMALLAANDTPPGRHSAQLTADLAESVRERPEMVFEHFAPSGLIMEVRSSSMP 404

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +L+F +VTD  R E+ L E  +   + +  KN+F+ ++S+ELR+PL  IIGF++++
Sbjct: 405 GGGLILSFTDVTDRKRVEQTLREAKDEAERGNRAKNTFLANISHELRTPLNAIIGFSEMM 464

Query: 595 KTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           K    G L     + YV+ I  S   LL L+NDILD++  +AG+  L  + + + DL+  
Sbjct: 465 KHEIFGPLEPASYRTYVDDIHESGMHLLELINDILDMSKAEAGMTDLMEAAVHVPDLVRG 524

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + +  +     I +       L   +AD +RL Q+   + SNA+ F+  G  V + A 
Sbjct: 525 AIRLLTRRAENAGITLSEDLPPTLPLLLADERRLRQVILNLGSNAVKFTDDGGAVTIGAK 584

Query: 714 RDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                FI +V + G  + PE++ + V   FV    R  R+  G GLGL + ++ I  HGG
Sbjct: 585 VTEAGFIITVADTGIGMTPEELLR-VMEPFVQADTRLSRKYEGSGLGLPLAKALICAHGG 643

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S     T      P
Sbjct: 644 TLHLDSQPGRGTVATVTFP 662


>gi|224537669|ref|ZP_03678208.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520728|gb|EEF89833.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 431

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 136/240 (56%), Gaps = 8/240 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T  ++T   +AE  L    E    AD  K++F+ ++S+E+R+PL  I+GF++LL ++ 
Sbjct: 166 VITVHDITRLKKAEAELNRAREKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLASA- 224

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S   +++Q++E + +++ +L  L+ DILDL+ ++AG ++  +S + +N L+ +++Q  
Sbjct: 225 --STEEEKAQFLEIVHSNNELLQQLIADILDLSKIEAGTLEFTFSEVDVNQLMFDIEQLF 282

Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             ++ + +  I++I        V   DR RL Q+ S  ++NA+ F+ +GS +     R  
Sbjct: 283 RMRLEDKSAVIQIIRQTPPDECVMYTDRNRLQQVVSNFMTNAVKFTDEGS-ITFGYNRCA 341

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F VK+ GS IPED    +F RFV       ++G GLGL+I E  I   GG + + S
Sbjct: 342 EGLYFYVKDTGSGIPEDKVNHIFERFVRVEQ--NKKGTGLGLAICEMIIRKLGGKIGVES 399


>gi|294851985|ref|ZP_06792658.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|294820574|gb|EFG37573.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 798

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 543 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 602

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 603 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 662

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 663 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 720

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 721 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 780

Query: 789 PSK 791
           P +
Sbjct: 781 PDR 783


>gi|225627123|ref|ZP_03785161.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|225617958|gb|EEH15002.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
          Length = 798

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 543 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 602

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 603 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 662

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 663 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 720

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 721 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 780

Query: 789 PSK 791
           P +
Sbjct: 781 PDR 783


>gi|256060749|ref|ZP_05450912.1| PAS domain S-box-containing protein [Brucella neotomae 5K33]
 gi|261324738|ref|ZP_05963935.1| multi-sensor signal transduction histidine kinase [Brucella
           neotomae 5K33]
 gi|261300718|gb|EEY04215.1| multi-sensor signal transduction histidine kinase [Brucella
           neotomae 5K33]
          Length = 783

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765

Query: 789 PSK 791
           P +
Sbjct: 766 PDR 768


>gi|306842114|ref|ZP_07474784.1| PAS domain S-box-containing protein [Brucella sp. BO2]
 gi|306287787|gb|EFM59215.1| PAS domain S-box-containing protein [Brucella sp. BO2]
          Length = 783

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765

Query: 789 PSK 791
           P +
Sbjct: 766 PDR 768


>gi|237815075|ref|ZP_04594073.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|237789912|gb|EEP64122.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
          Length = 798

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 543 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 602

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 603 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 662

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 663 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 720

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 721 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 780

Query: 789 PSK 791
           P +
Sbjct: 781 PDR 783


>gi|306845222|ref|ZP_07477798.1| PAS domain S-box-containing protein [Brucella sp. BO1]
 gi|306274381|gb|EFM56188.1| PAS domain S-box-containing protein [Brucella sp. BO1]
          Length = 783

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765

Query: 789 PSK 791
           P +
Sbjct: 766 PDR 768


>gi|163842891|ref|YP_001627295.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|163673614|gb|ABY37725.1| PAS domain S-box [Brucella suis ATCC 23445]
          Length = 783

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765

Query: 789 PSK 791
           P +
Sbjct: 766 PDR 768


>gi|254693380|ref|ZP_05155208.1| PAS domain S-box-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|261213630|ref|ZP_05927911.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915237|gb|EEX82098.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 3 str. Tulya]
          Length = 783

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765

Query: 789 PSK 791
           P +
Sbjct: 766 PDR 768


>gi|254713753|ref|ZP_05175564.1| PAS domain S-box-containing protein [Brucella ceti M644/93/1]
 gi|254717189|ref|ZP_05179000.1| PAS domain S-box-containing protein [Brucella ceti M13/05/1]
 gi|261219005|ref|ZP_05933286.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M13/05/1]
 gi|261321495|ref|ZP_05960692.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M644/93/1]
 gi|260924094|gb|EEX90662.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M13/05/1]
 gi|261294185|gb|EEX97681.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M644/93/1]
          Length = 783

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765

Query: 789 PSK 791
           P +
Sbjct: 766 PDR 768


>gi|17987608|ref|NP_540242.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|23501503|ref|NP_697630.1| sensory box histidine kinase [Brucella suis 1330]
 gi|62289578|ref|YP_221371.1| histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|148559697|ref|YP_001258609.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|161618591|ref|YP_001592478.1| multi-sensor signal transduction histidine kinase [Brucella canis
           ATCC 23365]
 gi|225852141|ref|YP_002732374.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|254688899|ref|ZP_05152153.1| PAS domain S-box-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|254697031|ref|ZP_05158859.1| PAS domain S-box-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701410|ref|ZP_05163238.1| PAS domain S-box-containing protein [Brucella suis bv. 5 str. 513]
 gi|254703955|ref|ZP_05165783.1| PAS domain S-box-containing protein [Brucella suis bv. 3 str. 686]
 gi|254707666|ref|ZP_05169494.1| PAS domain S-box-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|254709750|ref|ZP_05171561.1| PAS domain S-box-containing protein [Brucella pinnipedialis B2/94]
 gi|254729930|ref|ZP_05188508.1| PAS domain S-box-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|256031240|ref|ZP_05444854.1| PAS domain S-box-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|256044318|ref|ZP_05447222.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113155|ref|ZP_05454032.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256254648|ref|ZP_05460184.1| PAS domain S-box-containing protein [Brucella ceti B1/94]
 gi|256257147|ref|ZP_05462683.1| PAS domain S-box-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|256264347|ref|ZP_05466879.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369055|ref|YP_003106563.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260168376|ref|ZP_05755187.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|260563672|ref|ZP_05834158.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260566796|ref|ZP_05837266.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|260754384|ref|ZP_05866732.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 6 str. 870]
 gi|260757603|ref|ZP_05869951.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 4 str. 292]
 gi|260761429|ref|ZP_05873772.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883409|ref|ZP_05895023.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 9 str. C68]
 gi|261221823|ref|ZP_05936104.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           B1/94]
 gi|261315163|ref|ZP_05954360.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M163/99/10]
 gi|261317281|ref|ZP_05956478.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis B2/94]
 gi|261751949|ref|ZP_05995658.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 5 str. 513]
 gi|261754607|ref|ZP_05998316.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 3 str. 686]
 gi|261757836|ref|ZP_06001545.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|265988319|ref|ZP_06100876.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M292/94/1]
 gi|265990730|ref|ZP_06103287.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994568|ref|ZP_06107125.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297247993|ref|ZP_06931711.1| two-component system, PleD family, sensor histidine kinase PleC
           [Brucella abortus bv. 5 str. B3196]
 gi|17983316|gb|AAL52506.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|23347410|gb|AAN29545.1| sensory box histidine kinase [Brucella suis 1330]
 gi|62195710|gb|AAX74010.1| histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|148370954|gb|ABQ60933.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|161335402|gb|ABX61707.1| multi-sensor signal transduction histidine kinase [Brucella canis
           ATCC 23365]
 gi|225640506|gb|ACO00420.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|255999215|gb|ACU47614.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260153688|gb|EEW88780.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260156314|gb|EEW91394.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|260667921|gb|EEX54861.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 4 str. 292]
 gi|260671861|gb|EEX58682.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674492|gb|EEX61313.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 6 str. 870]
 gi|260872937|gb|EEX80006.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 9 str. C68]
 gi|260920407|gb|EEX87060.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           B1/94]
 gi|261296504|gb|EEY00001.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis B2/94]
 gi|261304189|gb|EEY07686.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M163/99/10]
 gi|261737820|gb|EEY25816.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261741702|gb|EEY29628.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 5 str. 513]
 gi|261744360|gb|EEY32286.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 3 str. 686]
 gi|262765681|gb|EEZ11470.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001514|gb|EEZ14089.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094621|gb|EEZ18419.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|264660516|gb|EEZ30777.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M292/94/1]
 gi|297175162|gb|EFH34509.1| two-component system, PleD family, sensor histidine kinase PleC
           [Brucella abortus bv. 5 str. B3196]
 gi|326408641|gb|ADZ65706.1| PAS domain S-box-containing protein [Brucella melitensis M28]
 gi|326538363|gb|ADZ86578.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 783

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765

Query: 789 PSK 791
           P +
Sbjct: 766 PDR 768


>gi|254718765|ref|ZP_05180576.1| PAS domain S-box-containing protein [Brucella sp. 83/13]
 gi|265983743|ref|ZP_06096478.1| multi-sensor signal transduction histidine kinase [Brucella sp.
           83/13]
 gi|264662335|gb|EEZ32596.1| multi-sensor signal transduction histidine kinase [Brucella sp.
           83/13]
          Length = 783

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765

Query: 789 PSK 791
           P +
Sbjct: 766 PDR 768


>gi|82699508|ref|YP_414082.1| PAS domain-containing protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023837|ref|YP_001934605.1| sensory box histidine kinase [Brucella abortus S19]
 gi|260545661|ref|ZP_05821402.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|82615609|emb|CAJ10596.1| PAS domain:PAC motif:ATP-binding region, ATPase-like:Histidine
           kinase A, N-terminal:Bacterial sensor protein,
           C-terminal:Hist [Brucella melitensis biovar Abortus
           2308]
 gi|189019409|gb|ACD72131.1| sensory box histidine kinase [Brucella abortus S19]
 gi|260097068|gb|EEW80943.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
          Length = 783

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 528 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 588 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 647

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 648 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 706 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 765

Query: 789 PSK 791
           P +
Sbjct: 766 PDR 768


>gi|91202234|emb|CAJ75294.1| similar to histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 395

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 155/304 (50%), Gaps = 17/304 (5%)

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL---PNAQTMLTFVNVT 546
           +  +S  W     I+ S  D+ KS+   +E  +D  L     P+       + L    + 
Sbjct: 69  HLKDSASWRHIPVIMISAIDDMKSIIRCIEKGADDYLTKPYNPVLLKARIGSCLMKKRLH 128

Query: 547 DSVRAERALTEK------------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           D     R L EK            N AL KA  +K+ F+  +S+ELR+PL  IIGF ++L
Sbjct: 129 DQEEQYRHLLEKKVQEKTSDLQKTNIALEKAYRLKSEFLATMSHELRTPLNAIIGFAEVL 188

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +N +Q +YV+ I +S   LLN++N++LD++ ++AG ++L Y  I + + +++V
Sbjct: 189 KDGLVGPINDEQREYVDDIYSSGKHLLNMINNVLDISKIEAGKLELKYEEICVKETIDDV 248

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +++   ++ NI IK      + +FV D+ +L QI   +LSNA+ F+ K   V +    
Sbjct: 249 LNTVSGIANKKNITIKNTIQSDIPTFVVDQLKLKQILFNLLSNAIKFTPKNGNVCIDTTL 308

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +    F++ + G  I ++  + +F  F  V ++      G GL L++ +  + LHGG +
Sbjct: 309 KDLYVQFAIADTGIGIKQEDIEKIFEAFSQVDSSLARNYEGAGLSLALTKRLVELHGGEI 368

Query: 773 SISS 776
            + S
Sbjct: 369 WVES 372


>gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 364

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/249 (34%), Positives = 135/249 (54%), Gaps = 14/249 (5%)

Query: 551 AERALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           A R +TE+    ++L++A  +K+ F+ ++S+ELR+PL  IIGF + L   K G+LN KQ 
Sbjct: 112 AARDVTERKRFEQSLQEASRMKSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTLNPKQK 171

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHE 664
           +Y+  I  S   LL L+ND+LDLA V+AG M L   + VL+  ++E   V + +A K H 
Sbjct: 172 EYLGDILNSGKHLLQLINDVLDLAKVEAGKMDLTPVSFVLSQAIDEVCAVAKPLAQKKH- 230

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSV 723
             I +++    +L     D+Q+  Q+   +LSN + F+  G  V I     D   F  SV
Sbjct: 231 --IHVRLTVAPELSCVTLDQQKFKQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLSV 288

Query: 724 KNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           K+ G  I PED+ + +F  F        RR  G GLGL++    + L GG +++ S    
Sbjct: 289 KDTGIGIKPEDI-QRLFREFEQLESGASRRYEGTGLGLALTRKLVELQGGAINVESEVGV 347

Query: 781 VTTINCRIP 789
            +T +  +P
Sbjct: 348 GSTFSVVLP 356


>gi|83309766|ref|YP_420030.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944607|dbj|BAE49471.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 586

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 21/269 (7%)

Query: 544 NVTDSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLT 585
           +VT+    +RAL E NE L +                  A+  K+ F+ ++S+ELR+PL 
Sbjct: 318 DVTERHAYQRALQEANEQLEQRVVERTRELDLARCQAEEANRCKSEFLANMSHELRTPLN 377

Query: 586 NIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            IIGF+D++++   G + N++  +Y+ +I  S   LL ++NDILDLA V+ G   L+  +
Sbjct: 378 AIIGFSDVMRSGVFGPVGNARYGEYIGWIWDSGHHLLRIINDILDLAKVEVGRFDLSRES 437

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             +  LL    + ++ +     + +   ++  LG  + D  R+ Q+   +LSNA+ F+  
Sbjct: 438 TPVLPLLESAIRLVSERATRAEVNVGCKAEPGLGDAMLDPLRMKQVLLNLLSNAVKFTPA 497

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           G +V L+A  +  D +  V + G  + E+  +     FV       RR  G GLGL + +
Sbjct: 498 GGSVSLEARHEGTDLVLIVADTGIGMDEESLEKALQPFVQVESSLSRRYAGTGLGLPLAK 557

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SF  LHGG + + S     TT+  RIP K
Sbjct: 558 SFSELHGGSLDLVSRPGEGTTVTVRIPRK 586


>gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
          Length = 1160

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 131/248 (52%), Gaps = 7/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R  R L  + E L K ++ ++ F+ ++S+ELR+PL +II  + +L   K+   + K 
Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKD 575

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I+ +   LL L+ND+LDL+ V++G M LN  T   ++L+ +++Q   +   E N
Sbjct: 576 MEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKN 635

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSV 723
           I    + D      V DR ++ QI    LSNA  F+S+GS VILKA  D     D IFSV
Sbjct: 636 ISF-FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGS-VILKAEMDKDRENDLIFSV 693

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IPE+    +F  F  V      +  G GLGLSI +   +L  G + + S     
Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753

Query: 782 TTINCRIP 789
           +T   ++P
Sbjct: 754 STFFLKLP 761


>gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 778

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 139/255 (54%), Gaps = 11/255 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TDS R E  L E  EA   A+  K+ F+ ++S+ELR+PL  IIGF+++L +   G L 
Sbjct: 522 DITDSRRGEDRLREAKEAAEFANRAKSEFLTNMSHELRTPLNAIIGFSEVLHSEMFGPLG 581

Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +  +QY++Y   I  S   LL+++NDILD++ ++AG   L    +   +++  V + +  
Sbjct: 582 A--TQYLDYAASIRDSGRHLLDVINDILDVSRIEAGRATLFPEPLDFAEIVASVHRLVNQ 639

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGD 718
           +     +R+K+  D  L   + + +RL Q+   +L NA+ F+  G  + L A    D G 
Sbjct: 640 RAEAAGVRLKITLDPALPPLLGEARRLKQVLINLLGNAIKFTPAGGEIALSARGDEDKGQ 699

Query: 719 FIFSVKNNGSSI-PEDMCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  V ++G  + PED+  ++  F +      R +  G GLGL + ++F+ LHGG + + 
Sbjct: 700 MVIEVSDSGIGMAPEDIPLALEPFRQIDGQLAR-RYEGTGLGLPLSKAFVELHGGTLRVD 758

Query: 776 SSDEGVTTINCRIPS 790
           S+    T I  R+P+
Sbjct: 759 STPGAGTRITVRLPA 773



 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH----IRNIAATCSRYYNE 493
           +  DHL EGVA++GPD R+   N  F SL +T   R +PG      +R++ A  +   N 
Sbjct: 15  DIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEILRDLVAPDTGEENR 74

Query: 494 SD 495
           +D
Sbjct: 75  AD 76


>gi|256004999|ref|ZP_05429971.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|255991068|gb|EEU01178.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
          Length = 1105

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 131/248 (52%), Gaps = 7/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R  R L  + E L K ++ ++ F+ ++S+ELR+PL +II  + +L   K+   + K 
Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKD 575

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I+ +   LL L+ND+LDL+ V++G M LN  T   ++L+ +++Q   +   E N
Sbjct: 576 MEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKN 635

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSV 723
           I    + D      V DR ++ QI    LSNA  F+S+GS VILKA  D     D IFSV
Sbjct: 636 ISF-FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGS-VILKAEMDKDRENDVIFSV 693

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IPE+    +F  F  V      +  G GLGLSI +   +L  G + + S     
Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753

Query: 782 TTINCRIP 789
           +T   ++P
Sbjct: 754 STFFLKLP 761


>gi|114776327|ref|ZP_01451372.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553157|gb|EAU55555.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 1180

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 132/241 (54%), Gaps = 12/241 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           NE L +A E KN F+ + S+ELR+PL  IIGF++L+   ++G LNSKQ +YVE I +S  
Sbjct: 480 NEELVQASEAKNQFLANTSHELRTPLNAIIGFSELMGNPRMGPLNSKQHRYVENIHSSGK 539

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD++ ++AG+M +        ++ N+V   + +      +++ + +    G
Sbjct: 540 RLLKIINDLLDISRIEAGMMVVEEQVFPPREVANQVMAEMTSLASLKGLKLTMDACPDEG 599

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIP 731
             +  DR +L Q+   ++ NA+ F+ +G +V L       +AR   + +  VK+NG  IP
Sbjct: 600 QLIRTDRGKLHQMMVNLVGNAIKFTPEGGSVTLSMEINVVSARQR-ELVVHVKDNGIGIP 658

Query: 732 EDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               + +F  FV   H G  R   G GLGL++    + + GG VS  S +   +T   R+
Sbjct: 659 AADLEKIFEPFV-QVHGGLARAYEGTGLGLALTRRQVRMLGGDVSGESREGDGSTFIIRL 717

Query: 789 P 789
           P
Sbjct: 718 P 718


>gi|171056738|ref|YP_001789087.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170774183|gb|ACB32322.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 508

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 5/231 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K++F+ ++S+ELR+PL  IIGF+++L     G +N+KQ +Y+  I AS   LL L+
Sbjct: 274 ANRNKSAFLANMSHELRTPLNAIIGFSEVLIEQMFGEVNAKQLEYLRDIHASGHHLLTLI 333

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LDL+ ++AG M+L  S   L +LL+     +  +   + +R+ + + DG LG +VAD
Sbjct: 334 NDVLDLSKIEAGRMELQPSRFHLPELLDNSLTLVRERAANHGLRLTLDVQDG-LGDWVAD 392

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            +++ Q+   +LSNA+ F+  G  V L+A R D G    +V + G  I  +    VF  F
Sbjct: 393 PRKIKQVVVNLLSNAVKFTPAGGHVTLRARRIDAGTAEIAVIDTGVGIAPEEQAQVFEEF 452

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   R+  G GLGL++   F+ LHGG + + S+    +T    +P +
Sbjct: 453 RQAGTDPLRKSEGTGLGLALARRFVELHGGTLRVDSAPGRGSTFAFTLPDR 503


>gi|298387248|ref|ZP_06996801.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259917|gb|EFI02788.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 1039

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 142/248 (57%), Gaps = 6/248 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + E  L        +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 655 ITERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 711

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++T+LL L++DILDL+ ++AG + L+YS + +NDL+ +++     K+  
Sbjct: 712 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKS 771

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           + ++++ ++  +      ++ RL Q+   +++NA+ F+ +GS +     R N +  F V 
Sbjct: 772 DAVKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQGS-IRFGYKRQNNELYFYVA 830

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T 
Sbjct: 831 DTGCGIPQDKQKSIFGRFVKLNSFAQ--GTGLGLSICQTLVEHMGGKIGVESEEGNGSTF 888

Query: 785 NCRIPSKE 792
              +P K+
Sbjct: 889 WFTLPYKQ 896


>gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 1160

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 131/248 (52%), Gaps = 7/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R  R L  + E L K ++ ++ F+ ++S+ELR+PL +II  + +L   K+   + K 
Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKD 575

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I+ +   LL L+ND+LDL+ V++G M LN  T   ++L+ +++Q   +   E N
Sbjct: 576 MEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKN 635

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSV 723
           I    + D      V DR ++ QI    LSNA  F+S+GS VILKA  D     D IFSV
Sbjct: 636 ISF-FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGS-VILKAEMDKDRENDVIFSV 693

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IPE+    +F  F  V      +  G GLGLSI +   +L  G + + S     
Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753

Query: 782 TTINCRIP 789
           +T   ++P
Sbjct: 754 STFFLKLP 761


>gi|170748167|ref|YP_001754427.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654689|gb|ACB23744.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 511

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 133/249 (53%), Gaps = 13/249 (5%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++K    G+  +    
Sbjct: 238 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGTHTAPS-- 295

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y EY   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ E +  +  +    
Sbjct: 296 YREYSHDIHDSGMHLLNLINEILDLSRIEAGRYELNEEPVQLAHVVEECRHMMGLRAKAK 355

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSV 723
           N     + DG L    AD + L QI   +LSNA+ F+  G  + LK       G ++ SV
Sbjct: 356 NQTFHDLVDGSLPRLWADERALRQIVLNLLSNAVKFTPPGGEIWLKVGWTASGGQYV-SV 414

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K++G  IPED   +V + F   S A +   +G GLGL IV+  + LHGG   +SS     
Sbjct: 415 KDSGPGIPEDELGTVLSSFGRGSLAIKTAEQGSGLGLPIVKGLVELHGGQFQLSSKPREG 474

Query: 782 TTINCRIPS 790
           T +   +P+
Sbjct: 475 TEVVVTLPA 483


>gi|265997787|ref|ZP_06110344.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M490/95/1]
 gi|262552255|gb|EEZ08245.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M490/95/1]
          Length = 367

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 112 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 171

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 172 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 231

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 232 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 289

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 290 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 349

Query: 789 PSK 791
           P +
Sbjct: 350 PDR 352


>gi|29346674|ref|NP_810177.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568722|ref|ZP_04846133.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338571|gb|AAO76371.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842795|gb|EES70875.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 1039

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 142/248 (57%), Gaps = 6/248 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + E  L        +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 655 ITERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 711

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++T+LL L++DILDL+ ++AG + L+YS + +NDL+ +++     K+  
Sbjct: 712 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKS 771

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           + ++++ ++  +      ++ RL Q+   +++NA+ F+ +GS +     R N +  F V 
Sbjct: 772 DAVKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQGS-IRFGYKRQNNELYFYVA 830

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T 
Sbjct: 831 DTGCGIPQDKQKSIFGRFVKLNSFAQ--GTGLGLSICQTLVEHMGGKIGVESEEGNGSTF 888

Query: 785 NCRIPSKE 792
              +P K+
Sbjct: 889 WFTLPYKQ 896


>gi|298674344|ref|YP_003726094.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298287332|gb|ADI73298.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 837

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 145/267 (54%), Gaps = 4/267 (1%)

Query: 526 LEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           L  ++I L     +L F  ++T    AE  L         A + K+  + +V++ELR+PL
Sbjct: 569 LRMTLIDLNGKPVILGFSRDMTVQKEAEENLINAKLEAEAASQAKSDILANVNHELRTPL 628

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T+IIGF+D+L   K G LN  Q  Y+  +  +   LL+L+ DILDL+ +++G   LNY  
Sbjct: 629 TSIIGFSDVLLKGKAGDLNESQKMYLSRVHNNGKHLLDLITDILDLSKIESGKSGLNYER 688

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           I + +L+N++K+ I   +    + +    D  L    AD  ++ QI S +L NA+ F+ +
Sbjct: 689 ISIIELVNDLKEYIQPFVSNKVLILHSRVDSGLNYIYADYIKIKQILSNLLYNAVKFTEE 748

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
           GS + L+ +++  D  FSV + G  IP+   +++F+ F  + +    + +G GLGL++V 
Sbjct: 749 GS-ITLEVSQNEDDVQFSVIDTGIGIPKGSHEAIFDSFKQLDSGPARKYQGTGLGLALVN 807

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             +N+HGG + + S  +  +     IP
Sbjct: 808 KLVNMHGGQIWVESEIKKGSRFTFTIP 834


>gi|256159347|ref|ZP_05457133.1| PAS domain-containing protein [Brucella ceti M490/95/1]
          Length = 376

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
           R  + + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L S +  +Y+ 
Sbjct: 121 RKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYIN 180

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++ 
Sbjct: 181 DIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVET 240

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D       ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  I
Sbjct: 241 RIEDAM--ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGI 298

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+   + +   F  V N       G GLGL+I  S   LHGG + I S++   T ++  I
Sbjct: 299 PKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCI 358

Query: 789 PSK 791
           P +
Sbjct: 359 PDR 361


>gi|78223984|ref|YP_385731.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78195239|gb|ABB33006.1| amino acid-binding domain sensor histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 576

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 147/250 (58%), Gaps = 4/250 (1%)

Query: 544 NVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           N+ D VR   A L    E    AD++K++F+  +S+ELR+PL +IIGFT +L     G +
Sbjct: 325 NLEDLVRERTAELAVAKERAEAADQLKSAFLATMSHELRTPLNSIIGFTGILLQGLGGPI 384

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q++ +  +  S+  LL+L++D+LD++ ++AG +K++     L + + +V QS+A  +
Sbjct: 385 NDEQAKQLTMVRHSANHLLSLISDVLDISKIEAGQLKISPEPFQLRESVQKVTQSVAGLV 444

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +  +R+ +     +GS V+D++R+ Q+   +LSNA+ F+ +G T+ ++ +R++  ++ S
Sbjct: 445 DKKGLRLILEIADDVGSIVSDQRRVEQVLLNLLSNAVKFTEQG-TISVRCSRESEWYVTS 503

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I E+  + +F  F  V      +  G GLGLSI +  + L GG +++ S    
Sbjct: 504 VADSGIGIKEEDLERLFKPFHQVDTGLSRKYEGTGLGLSICKRLVELMGGSITVESRQGE 563

Query: 781 VTTINCRIPS 790
            +T    +P+
Sbjct: 564 GSTFCFLLPA 573


>gi|260462368|ref|ZP_05810576.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031862|gb|EEW33130.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
          Length = 773

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/244 (34%), Positives = 141/244 (57%), Gaps = 15/244 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--- 612
           TE+ EA  +A   K+ F+ ++S+ELR+PL  IIGF++L++    G L S  S+Y EY   
Sbjct: 529 TERAEAANRA---KSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGS--SRYEEYATD 583

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I++S   LL ++NDILD++ ++AG   L+   I L  L++E  + ++ +  +  I ++  
Sbjct: 584 INSSGKYLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETR 643

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I+D    +  ADR+ + QI   +LSNA+ F+ +G  + ++A   +G  + ++++NG  IP
Sbjct: 644 IADAL--TLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARNTSGALVLTIEDNGCGIP 701

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRI 788
           ++    +   F  V N       G GLGL+I  S   L GG + I S+ EGV TI + RI
Sbjct: 702 KEALGKLGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRST-EGVGTIVSVRI 760

Query: 789 PSKE 792
           P K+
Sbjct: 761 PVKK 764


>gi|37520585|ref|NP_923962.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211579|dbj|BAC88957.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1130

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 4/235 (1%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +N+ L +AD  KN+F+  +S+ELR+PL  IIGF+ LL  +K      +    ++ +  + 
Sbjct: 620 QNQELVEADRQKNNFLASMSHELRTPLNAIIGFSQLLLRNKNLQEQPQVLLQLDRVYQNG 679

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            I L LVNDILDLA + AG ++L Y  + L   + EV  ++ +   + N+ +++  D  +
Sbjct: 680 KIQLRLVNDILDLAKIKAGKVELRYQPVALEPFVREVYAALESLALQKNLSVRIAVDPSI 739

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCK 736
           GS   D Q+L  I   +LSNA  ++ +G  V ++A R   D F   V++ G  I  D  +
Sbjct: 740 GSVETDPQQLRTILINLLSNAFKYTERGE-VEVRARRPAADRFELEVRDTGVGIDPDQQQ 798

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            VF+ F  +  A   Q  G GLGL+I +  + L GG +S+ S+    +T   R+P
Sbjct: 799 KVFDEFSRLEGAATRQASGTGLGLAICKRLVTLMGGEISLVSTPGVGSTFTVRLP 853


>gi|326318684|ref|YP_004236356.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375520|gb|ADX47789.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 1160

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 3/232 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RA+ AL++K   L +A + K+ F+ ++S+ELR+PL + +    LL  +K G+L  +Q +
Sbjct: 454 LRAQDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTDEQVR 513

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E I  +   LL L+NDILDLA ++AG   ++   + +   +  + + +     E N+ 
Sbjct: 514 YAETIHGAGNDLLTLINDILDLAKIEAGQATVDIEPVNVARAVQSIVEPLRPLAREKNLA 573

Query: 669 I-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
              V+  G       D QRL QI   +LSNA+ F+ +G   +  AA+ +G   FSV++ G
Sbjct: 574 FSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTERGEVALRVAAQPDGRVAFSVRDTG 633

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             IP+   K +F  F        R+  G GLGLSI      L GG VS+ S+
Sbjct: 634 IGIPDHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQST 685


>gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 763

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 140/236 (59%), Gaps = 2/236 (0%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VN+T   +AE  + +        +  K+ F+ ++S+ELR+PL +IIGF++LL    +G +
Sbjct: 504 VNITKRKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDI 563

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N+KQ +Y+  I      LL+L+N+ILD++ V++G M+L+Y    ++ +++++   +    
Sbjct: 564 NNKQERYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLA 623

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N I I    D +L    AD+ ++ QI   +LSNA+ F+++  T+ ++A  D+      
Sbjct: 624 ITNRIEIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEAIFDDKLMQIC 683

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +K+NG  I ++  + +F  F  + +A   + +G GLGL++V++F+ +HGG++ + S
Sbjct: 684 IKDNGIGIEKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDS 739


>gi|163867966|ref|YP_001609170.1| two-component sensor histidine kinase [Bartonella tribocorum CIP
           105476]
 gi|161017617|emb|CAK01175.1| two-component sensor histidine kinase [Bartonella tribocorum CIP
           105476]
          Length = 773

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 186/398 (46%), Gaps = 38/398 (9%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q DL  +         + I+++SE   ++  +GR+ +SN  F       +  L  G  
Sbjct: 382 TAQADLRIR---------DAIENISESFVLWDAEGRLVMSNSKFCEYAAIPKQILQSGIQ 432

Query: 480 IRNIAATC----SRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSVLEYS 529
              + A      S Y  + DG     +I  + D      +ER++  G L  +   + E  
Sbjct: 433 RATVEAMARPALSEYPLKDDGTGNLTSIRQTADGYWLKINERRTQDGGLVCIGTDISELK 492

Query: 530 IIPLP---NAQTMLTFVN------------VTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                   + + + +F+              T+  +  ++L  + E    A++ K+ F+ 
Sbjct: 493 QQQEKFEDSERRLFSFIQELKRTRGSAQQRATEVEKLNKSLKAEKERAESANKAKSEFLA 552

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATV 633
           ++S+ELR+PL  I+GF+D++  S  G L S++  +Y+  I  S T LL L+NDILD++ +
Sbjct: 553 NMSHELRTPLNAILGFSDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKI 612

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG   L+     L  +++E  +++  +  E NI +      KL + V D + + QIF  
Sbjct: 613 EAGRFTLDCKNTDLEPIISEAVRTLTPQAQEKNIAVTTNITPKLHAEV-DGRAMKQIFLN 671

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           ++SNA+ F+  G  + + A +   + IF + + G  IP+   K +   F  V N      
Sbjct: 672 LISNAVKFTPSGGNIDVCAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSH 731

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL+I  S + LH G + I+S +   TT+   +P
Sbjct: 732 TGSGLGLAISRSLLELHKGKLEITSKEMKGTTVTIIMP 769


>gi|293370018|ref|ZP_06616585.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634936|gb|EFF53458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 570

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 130/235 (55%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  +    L 
Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV  + + K  
Sbjct: 384 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 441

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +  +  D     F V
Sbjct: 442 DTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCV 501

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  IP++    +FNRFV      Q  G GLGLSI +S +N  GG + + S +
Sbjct: 502 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVNRMGGKIGVESRE 554


>gi|299147742|ref|ZP_07040805.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513925|gb|EFI37811.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 570

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 130/235 (55%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  +    L 
Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV  + + K  
Sbjct: 384 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 441

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +  +  D     F V
Sbjct: 442 DTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCV 501

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  IP++    +FNRFV      Q  G GLGLSI +S +N  GG + + S +
Sbjct: 502 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVNRMGGKIGVESRE 554


>gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105]
 gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105]
          Length = 1085

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 138/248 (55%), Gaps = 11/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    LT++ +    A + K +F+ ++S+E+R+P+  I+G   LL+ +    L ++Q  Y
Sbjct: 680 RINHVLTDRTQQAEAASKAKGAFLANMSHEIRTPMNAIMGLLQLLEDT---DLQARQRDY 736

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I +++ +LLN++NDILD++ V+A  ++L++S  +L+ +L++     A +  E  I++
Sbjct: 737 LSKIGSAADVLLNVLNDILDISRVEANKLELSHSRFLLDQVLSKATDLFAYRAEEKAIQL 796

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNG 727
               D     S   DR RL QI + +LSNA+ F+ KG   + +++  D     FSVK+ G
Sbjct: 797 YCSKDANCPVSLKGDRLRLAQILNNLLSNALKFTEKGRIHLQVQSVADGKQLQFSVKDTG 856

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE-GVT-- 782
             + E+ C ++F  F        RR  G GLGLSI ++ + L GG + + S+   G T  
Sbjct: 857 IGMNEEQCAALFQPFSQVDDSSSRRYGGAGLGLSICKNLVELMGGQIWVESTPGLGTTFH 916

Query: 783 -TINCRIP 789
            T+NC  P
Sbjct: 917 FTVNCVEP 924


>gi|325292361|ref|YP_004278225.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325060214|gb|ADY63905.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 775

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 194/421 (46%), Gaps = 36/421 (8%)

Query: 401 HVIVTSN-PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            VI T+N PR   I +  ++T Q  L  +Y    +   + I+  SE   ++  + R+ + 
Sbjct: 349 QVIRTNNGPR--VIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMC 406

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF------DD---- 509
           N  ++  +   ++ L  GT    + A  +R   E    D   + ++        DD    
Sbjct: 407 NTHYQKAYGLPDSVLVAGTEKSAVQAAAARPVVERRVADPDQSGLSRMTEVQLADDRWLQ 466

Query: 510 --ERKSLQGTL--------------ELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             ER++  G L              E L DS   L  +I  L  +Q  L       S   
Sbjct: 467 INERRTRDGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELSDAN 526

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610
              L EK  A + A+  K+ F+ ++S+ELR+PL  I+GF+D+L+    G + S K S+Y 
Sbjct: 527 ANYLAEKERA-QAANLAKSEFLANMSHELRTPLNAILGFSDILQNEMFGPVGSPKYSEYA 585

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LLN++NDILD++ ++AG M++N  TI L  L+ E  +  A +  + NI ++
Sbjct: 586 RDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITVQ 645

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 L +   DR+ + QI   +LSNA+ F+  G  V L+        I ++ + G  I
Sbjct: 646 QKVCAGL-TMQGDRRAMKQIMLNLLSNAVKFTGNGGRVALRTHVHQAAMILTIADTGIGI 704

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +    +   F  V + +   + G GLGL+I  S + LHGG + I S +   T +   I
Sbjct: 705 PAEALDKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVRLHGGTMKIRSCEGRGTVVTIII 764

Query: 789 P 789
           P
Sbjct: 765 P 765


>gi|148554082|ref|YP_001261664.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148499272|gb|ABQ67526.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 829

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 133/261 (50%), Gaps = 6/261 (2%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-DEIKNSFVQHVSYELRSPLTNIIGF 590
           P+P    +L  + + D +    AL  ++ A RK  D +K+ F+  VS+ELR+PLT+++G 
Sbjct: 317 PVP-VDVVLGTMPLPDGIHIVAAL--RDAAGRKEIDRLKDDFISTVSHELRTPLTSVVGS 373

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL++   G L ++  +  E    +S  L+ L+NDILD+  +  G M   Y+ I L D+
Sbjct: 374 LTLLRSGAAGQLPAEAQRLAEIAETNSQRLIRLINDILDIDQIRKGRMAFEYAVIDLRDV 433

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + +   ++       +IRI+ +         AD  RL+Q+   +LSNA+ FS + +TV  
Sbjct: 434 MTKAAHAMQGLADRRSIRIETLMPSTPVMACADADRLVQVAGNLLSNAVKFSPEEATVRF 493

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
           +      D +  + ++G  IP +   ++F+RF   +   ++   G GLGL+I    +  H
Sbjct: 494 ELIEGRDDHVIQITDSGPGIPAEFANNIFHRFARGSQPSRQIIAGTGLGLAISREIVRSH 553

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +S  +  EG       IP
Sbjct: 554 GGEISFENRAEGGARFAFSIP 574


>gi|312960964|ref|ZP_07775469.1| two-component sensor/regulator [Pseudomonas fluorescens WH6]
 gi|311284622|gb|EFQ63198.1| two-component sensor/regulator [Pseudomonas fluorescens WH6]
          Length = 470

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 136/255 (53%), Gaps = 26/255 (10%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R ERAL EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G+++  Q +Y
Sbjct: 191 RFERALEEKNLELEHASRMKSEFLATMSHELRTPLNAVIGFSEALKDGLVGAMSDTQREY 250

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S   LL+L+NDILDL+ V+AG+M L    + L  LL      +  K  +  I++
Sbjct: 251 IGDIFTSGQHLLSLINDILDLSKVEAGMMDLELEPVELAGLLANSLLIVREKAAQQRIQL 310

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDN-----GDFI- 720
           K+ S G LG+ + D+++  QI   +L+NA+ FS+    V   + +  RD      GD+  
Sbjct: 311 KLDSQGDLGTLMLDQRKTKQIVYNLLANAVKFSAHAGFVHLAVCEVDRDQVGLVPGDWPV 370

Query: 721 ---------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
                           SV + G  I  D    +F  F  + ++   +  G GLGL++V+ 
Sbjct: 371 YGFALQPSVHQRFLELSVSDTGIGIAADDMGKLFKAFSQIDSSLARKFEGTGLGLAMVKQ 430

Query: 764 FINLHGGHVSISSSD 778
             +LHGG V+++S +
Sbjct: 431 LTDLHGGSVAVASRE 445


>gi|160885058|ref|ZP_02066061.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
 gi|156109408|gb|EDO11153.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
          Length = 570

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 130/235 (55%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  +    L 
Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV  + + K  
Sbjct: 384 --RYVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 441

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +  +  D     F V
Sbjct: 442 DTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCV 501

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  IP++    +FNRFV      Q  G GLGLSI +S +N  GG + + S +
Sbjct: 502 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVNRMGGKIGVESRE 554


>gi|325104431|ref|YP_004274085.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324973279|gb|ADY52263.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1146

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 132/245 (53%), Gaps = 3/245 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L+ K + L +A + K+ F+ ++S+ELR+PL +I+    +LK +K G L+  +++Y 
Sbjct: 472 AKNTLSIKMQELEQASKYKSEFLANMSHELRTPLNSILILAKILKENKKGHLSEDETKYA 531

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  +   LL+L+NDILDL+ +++G ++LN   + + DL +++KQ      +   +   
Sbjct: 532 SVIHRAGGDLLSLINDILDLSKIESGFIELNPENLSVADLEDDLKQLFDEVANTKGVNFV 591

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +  D KL   +  DR R+ QI   +LSNA  F+SK  TV +  +  +    FSVK+ G  
Sbjct: 592 IERDPKLPETIYVDRLRIEQILKNLLSNAFKFTSKEGTVSVHMSEKDDFLRFSVKDTGIG 651

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPED  K +F  F        R   G GLGLSI      L  GH+S+ S     +     
Sbjct: 652 IPEDKQKIIFEAFQQADGSTNREYGGTGLGLSISRELSKLMDGHISLKSEVGKGSEFTLN 711

Query: 788 IPSKE 792
           IP+KE
Sbjct: 712 IPTKE 716


>gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 587

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 133/250 (53%), Gaps = 5/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD    E+AL     A  +AD  K  F+  +S+ELR+PL  IIGF+++L   +   LN
Sbjct: 305 DVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQALVLN 364

Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++ +Y + I+ S   LL++VN ILD++ +++G  +L          L      +A + 
Sbjct: 365 AARRREYAQLINDSGQHLLSVVNGILDMSKMESGNFELTPEPFAPRAALINCCNLLALRA 424

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            EN + +       L +   D +   QI   ++SNA+ F+ +G  V++ AA +    +  
Sbjct: 425 RENGVDLSADVPHDLPTITGDPRAFKQIVINLVSNAIKFTERGGRVMVSAAIEGPQLLLR 484

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DE 779
           + + G  I  D  K + + F       QRR  G GLGLSIV+S +NLHGG +SI S  DE
Sbjct: 485 ITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVNLHGGEMSIESKLDE 544

Query: 780 GVTTINCRIP 789
           G TT++  +P
Sbjct: 545 G-TTVSIALP 553


>gi|89070246|ref|ZP_01157570.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89044166|gb|EAR50324.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 552

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 6/235 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L+E+ E     D  KN F+  VS+ELRSPLT+I G   L+ +   G ++ K ++ VE 
Sbjct: 297 RDLSEREEM----DRAKNEFISTVSHELRSPLTSIKGAMGLVLSGAAGEISPKAAELVEI 352

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              ++  L+ +VNDILDL  + AG M+       L  +L E + +         ++I V 
Sbjct: 353 AHRNADRLVLIVNDILDLEKIAAGRMEFTLERHDLMVILREARAANNAYAERFQVKISVR 412

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                     D  R+LQ+ + +LSNA  FS  GS ++   + + G    SV + G  IP+
Sbjct: 413 PPAAPAWANVDADRILQVLTNLLSNAAKFSRPGSEILATVSTEGGRHTVSVTDRGVGIPQ 472

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           +   ++F RF  V N      RG GLGLSIV++ +  HGG VS+ S+    TT++
Sbjct: 473 EALATIFERFQQVDNPGHNAPRGSGLGLSIVKAIVESHGGSVSVDSTPGEGTTVS 527


>gi|297569313|ref|YP_003690657.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925228|gb|ADH86038.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 597

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 19/269 (7%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKADEIKNSFVQHVS 577
           L+ D+  +YSI    N +    +    +S   R    L + N  L ++  +K+ F+ ++S
Sbjct: 162 LIEDNYRQYSI----NREKEQEYARTLESEIARQTAELRKANARLEESSRLKSEFLANMS 217

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+  I GF  LL  +   SL++ Q +Y   I  SS  LL L+NDILDLA ++AG 
Sbjct: 218 HELRTPMNAITGFAQLLADT---SLDTTQQEYCRTIRQSSATLLALINDILDLAKIEAGR 274

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
           ++L      L++LL  V    +  + E  I I+V  D  L  +++ D  RL Q+ + ++ 
Sbjct: 275 LELEIVAFDLDELLESVAAMFSLSIREKGIAIQVRRDQGLPRAYLGDSHRLRQVLTNLVG 334

Query: 697 NAMDFSSKGSTVIL-------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           NA+ F+  G   +L       +AAR      F V+++G  IP    +++F +F       
Sbjct: 335 NAVKFTESGGVELLVESVAPPEAARQEQWLRFVVRDSGIGIPPHRLEAIFEKFTQADGST 394

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISS 776
            RR  G GLGL+I    + L GG + + S
Sbjct: 395 TRRFGGTGLGLAICRQLVELMGGRIEVES 423


>gi|89067396|ref|ZP_01154909.1| hypothetical protein OG2516_11166 [Oceanicola granulosus HTCC2516]
 gi|89046965|gb|EAR53019.1| hypothetical protein OG2516_11166 [Oceanicola granulosus HTCC2516]
          Length = 540

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 163/379 (43%), Gaps = 25/379 (6%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG-- 238
             L    +   +   + L +    L+W +D  G + WAN +Y             A    
Sbjct: 147 APLTLAAMEEELETLRSLGEDAPQLIWRQDADGTVSWANRAYLDTAARAAGAPAGAAPSW 206

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFGEAGI--AID 294
               +F E        +   ++    T S    G    +++  VR  +SF    +  A  
Sbjct: 207 PPPAIFGEIDPPEADGAGDQQRRAVRTQS----GEELWFEVTSVRRGDSFVHFALDAAPA 262

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           V  EI   + +    +   +L + +AIFD++R L   N S ++L  + + FLAT P    
Sbjct: 263 VRAEIAQRNFVQTLSKTFADLAIGLAIFDRDRRLVMFNPSLMDLTRLPIDFLATKPPIQS 322

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFS-VYKSSE-THKDTWHLPNGQTLHVIVTSNPRGGT 412
            L+ LR    LPE  N+++W+E + + V ++SE T+ +TW LP GQT  V    +P G  
Sbjct: 323 FLDRLRELRMLPEPRNYRSWREELAALVAEASEGTYCETWMLPAGQTFRVTGRPHPDGAI 382

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            ++ E++T ++ L  ++ T +       D L E +AVFGP G + ++N A+  LW     
Sbjct: 383 AFLIEDITAEMSLTRRFRTQIDTANAVFDTLDEAIAVFGPTGTLTMANAAYDGLWA---- 438

Query: 473 RLSPGTHIRNIAATCSRYYNESDGW-------DLFAAIITSFD--DERKSLQGTLELLSD 523
           R +P      +     R  +E D W       DL+A I  S     ER+   G       
Sbjct: 439 RPAPPPGDGELPLREPRLGDEIDTWRGACAPTDLWADIRDSAAGVGERRPWSGRARRDDG 498

Query: 524 SVLEYSIIPLPNAQTMLTF 542
            V+   + PLP   T++ F
Sbjct: 499 RVMRCRVAPLPGGATLVGF 517


>gi|148654385|ref|YP_001274590.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566495|gb|ABQ88640.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 687

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 134/256 (52%), Gaps = 3/256 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A T++  V    ++R    L  +  A   A +IK+ F+ ++S+ELR+PL +II FT ++ 
Sbjct: 162 ALTVIVMVRQVVAMRENVRLATERAAAEHASQIKSEFLANMSHELRTPLNSIINFTRIIS 221

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T   G +  +Q  Y+  +  S   LL L+NDILDL+ ++AG M+L   +  + DL+  V 
Sbjct: 222 TGARGPVTPEQIDYLNRVRQSGEHLLGLINDILDLSKIEAGRMELFRESFQIGDLIQSVL 281

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            + +  + E  I ++      L    ADR R+ Q+   +LSNA  F+  G T+ + A   
Sbjct: 282 ATASGLVKEKPIELRSEIAPHLPPVYADRTRVRQVLLNLLSNAAKFTDAG-TITVHAEGC 340

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           NG+ +  V + G  I  +  + +F  F  + NA   +  G GLGL+I    ++LHGG + 
Sbjct: 341 NGEIVIHVSDTGIGIAPEHLEKIFEAFRQLDNASNRRYEGTGLGLAICRRLVDLHGGRLW 400

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    +T +  +P
Sbjct: 401 VESAVGVGSTFSFSLP 416


>gi|315122620|ref|YP_004063109.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496022|gb|ADR52621.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 709

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 215/461 (46%), Gaps = 65/461 (14%)

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQVDLETKYN 430
           T  + IF V+ S  T +D W     Q ++ +      GG   I +  ++T Q  LE +Y 
Sbjct: 269 TQLDKIFRVHYS--TGRDVWIKVRAQVMNTL-----SGGMNVIGIAMDVTEQYYLEKRYA 321

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            + +   + I+  SE   ++  + R+ + N  ++ ++   ++ L PGT  R+I       
Sbjct: 322 EVDQRLSKAIECTSESFVLWDKNDRLVMCNAKYQQVYGLPDHVLIPGTK-RSI------- 373

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            NE+        ++  +  + K LQ     ++L+    L+ +    P+A T+    ++T 
Sbjct: 374 INEAQ----INPVVEYYTSDPKRLQNISKEIKLVDSRWLQINEWHTPDAGTISVGTDITQ 429

Query: 548 SVRAERALTEKNEALRK-----------------------------------ADEIKNSF 572
             R ++ L E    L+                                    A+  K+ F
Sbjct: 430 LKRNQKKLRESERRLKATINDLSTSRQILERQKTELSIANAKYQTEKERAEMANRAKSEF 489

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLA 631
           +  +S+ELR+PL  I+GF++++K    G L S K  +YV+ I  S   LLNL+N+IL+++
Sbjct: 490 LAKMSHELRTPLNAILGFSEIIKGETFGKLGSVKYYEYVKDIHDSGKHLLNLINNILEMS 549

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQI 690
            +++  + +N     L  ++NE  QSIA+   + NI I K IS     +  AD + + +I
Sbjct: 550 KIESEHIAINKKNTNLIPIINESLQSIASSAQKKNIMIEKNISPELFCN--ADERIIKKI 607

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
            + I SN++ F++ G  +I++ +R N   I +V + G  IP+   K V   F  + N + 
Sbjct: 608 LTPIFSNSIKFTNNGGKMIVQTSRVNDSVIITVADTGIGIPKSALKKVGKPFEQLHNQYD 667

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               G GLGL+I ++  NLHGG + I S +   T I   +P
Sbjct: 668 QNTGGSGLGLAISDALTNLHGGKLEILSQEGEGTVIKIGMP 708


>gi|241203816|ref|YP_002974912.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857706|gb|ACS55373.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 769

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 195/421 (46%), Gaps = 35/421 (8%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            VI +++ R   I +  ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N
Sbjct: 349 QVIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 408

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSR-----YYNESDGWDLFAAIITSFDDER---- 511
             F+  +   ++ L PGT    + A  +R       +++DG            DER    
Sbjct: 409 THFQQAYGLPDSVLVPGTERSTVNAAAARPVIERRISDADGSGYSRTTEVQLADERWLQI 468

Query: 512 ----------KSLQGTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                      S+   + L+         S+  L  +I  L  ++  L       S    
Sbjct: 469 NERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANS 528

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
               EK  A   A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L S K  +Y  
Sbjct: 529 NYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYAR 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670
            I  S   LLN++NDILD++ ++AG ++L+   I L  L+ E  +  A    E NI I +
Sbjct: 588 DIHDSGKHLLNVINDILDMSKIEAGHVRLHCERIDLVPLIEESLRFTAMPAAEKNIVIEQ 647

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I  G   + +ADR+ + Q+   +LSNA+ F+  G  + ++  R +G  + ++ + G  I
Sbjct: 648 RICSGL--TLMADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVVVTIADTGIGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      +   F  V + +   + G GLGL+I  S  +LHGG + I S +   T I+ RI
Sbjct: 706 PRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTSLHGGRMKIRSREAVGTVISLRI 765

Query: 789 P 789
           P
Sbjct: 766 P 766


>gi|116251211|ref|YP_767049.1| two component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255859|emb|CAK06940.1| putative two component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 769

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 220/505 (43%), Gaps = 56/505 (11%)

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETH 388
           F NR F   W   +  +   P +D+ + F  +A  + P+        E   ++ K S   
Sbjct: 273 FENREF--FWSRSMYDMLGLPGSDKTMGFGEAARLMHPDD---GGLYEIARAIGKGSSGQ 327

Query: 389 KD------------TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
            D             W     Q   VI +++ R   I +  ++T Q  L  +Y    +  
Sbjct: 328 VDQIFRMRHAGGHYVWMRARAQ---VIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRL 384

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR-----YY 491
            + I+  SE   ++  + R+ + N  F+  +   ++ L PGT    + A  +R       
Sbjct: 385 ADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTVNAAAARPVIERRI 444

Query: 492 NESDGWDLFAAIITSFDDER--------------KSLQGTLELL---------SDSVLEY 528
           +++DG            DER               S+   + L+         S+  L  
Sbjct: 445 SDADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLMA 504

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I  L  ++  L       S        EK  A   A++ K+ F+ ++S+ELR+PL  I+
Sbjct: 505 TIGDLSASRQTLEIQKSELSTANANYQAEKERA-EAANKAKSEFLANMSHELRTPLNAIL 563

Query: 589 GFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           GF+++L+    G L S K  +Y   I  S   LLN++NDILD++ ++AG ++L+   I L
Sbjct: 564 GFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCERIDL 623

Query: 648 NDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             L+ E  +  A    E NI I + I  G   + +ADR+ + Q+   +LSNA+ F+  G 
Sbjct: 624 VPLIEESLRFTAMPAAEKNIVIEQRICSGL--TLMADRRAMKQVLLNLLSNAVKFTDNGG 681

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
            + L+  R +G    ++ + G  IP      +   F  V + +   + G GLGL+I  S 
Sbjct: 682 RIALRTRRVDGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSL 741

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
            +LHGG + I S +   T I+ RIP
Sbjct: 742 TSLHGGRMKIRSREAVGTVISLRIP 766


>gi|220908294|ref|YP_002483605.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864905|gb|ACL45244.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 733

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K+ F+  +++ELR+PLT +IG +  L    LG LN KQ  Y++ I  S   LL L+
Sbjct: 356 AHRAKSDFLATINHELRTPLTCVIGMSATLLRWSLGPLNDKQRSYLKTIHDSGEHLLELI 415

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKLGSFVA 682
           NDILDL+ V+AG   L+ S   LN L  +  +    K  E  + +K+ S    +   F A
Sbjct: 416 NDILDLSQVEAGKAVLSLSEFSLNQLCRQALRVFREKAQEAEVELKLESLIPSEFERFCA 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D++R+ QI   +LSNA+ F+  G  V L++  +NG  +F V++ G  I       +F +F
Sbjct: 476 DQRRVRQILFNLLSNAIKFTPAGGRVTLRSWVENGKALFQVEDTGIGISLSQQPLLFQKF 535

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPSK 791
             +  ++     GVGLGL++ +  + LH G + + S+ EG+ +I    +P++
Sbjct: 536 QQLDTSYTRSYEGVGLGLALTKQLVELHRGRIEVEST-EGIGSIFTVELPAQ 586


>gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 371

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 145/250 (58%), Gaps = 4/250 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T+  +AE A+     A   A++ K+ F+ ++S+ELR+PL +IIGF+D++     GSLN
Sbjct: 110 NITERKKAEEAMLSAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSLN 169

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +++  + ++   LLN++NDIL  + ++ G M+L+ S   +++ +NE++  +     
Sbjct: 170 ELQKKFISNVISNGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPIAS 229

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           E NI +K   D  + +  AD  +  QI   +++NA+ F+++G  V ++    + DF+  S
Sbjct: 230 EKNIELKFNIDIGMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIRGEISD-DFVHIS 288

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK++G  I  D    +F  F  V +++  +  G GLGL+IV+ ++ +HGG V + S    
Sbjct: 289 VKDSGIGISPDDQNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEVGK 348

Query: 781 VTTINCRIPS 790
            +T   R+P+
Sbjct: 349 GSTFGFRMPT 358


>gi|225175738|ref|ZP_03729731.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168662|gb|EEG77463.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 535

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 134/229 (58%), Gaps = 4/229 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + +R L++ NE L +++ +K+ F   +++ELR+PLT+++ F +L+     G +  +Q + 
Sbjct: 281 QGQRRLSQLNEKLGESNRLKSEFTATMTHELRTPLTSVVAFCELMLDEVSGPITPEQREN 340

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S+  L+ LVNDILD+A  +AG ++++   + LND+L  V++S++   H+N I +
Sbjct: 341 LLDIKTSAQQLMVLVNDILDMAKHEAGSLRIHKEKVDLNDVLRMVRRSMSAIAHQNGISL 400

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGS 728
            V     L     DR R+ Q+   +++NA+ F+  G  + + +A   GDF I SV++ G 
Sbjct: 401 DV-EKTTLPFVYGDRDRIQQMVVNLVANAIKFTKDGGRITV-SANGEGDFAIISVQDTGI 458

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            I  ++   +F +F    H  QRR G GLGL++V++   L  G V++ S
Sbjct: 459 GISPELLPHIFEKFRQGDHPKQRRKGTGLGLALVKTLAELQDGKVAVDS 507


>gi|298290750|ref|YP_003692689.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
 gi|296927261|gb|ADH88070.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
          Length = 770

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 187/384 (48%), Gaps = 34/384 (8%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY------ 491
           + I+ +SE   ++    R+ + N  F+SL    +  ++PGT    +AA   +        
Sbjct: 371 DAIESISESFVLWDASNRLVMCNSKFQSLHGFGDANVAPGTEFETVAALARQPVVRIPLR 430

Query: 492 ---NESDGWDLFAAIITSFD----DERKSLQG----------TLELLSDSVLEYS----- 529
                 +G   F A +         ER++  G           L+   + ++E       
Sbjct: 431 PEDRPEEGARAFEAQLEGGRWLKVTERRTKDGGYVSVGTDITALKRHEERLMESEKRLMA 490

Query: 530 -IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +  L  +Q  L    +  +  A+    EK +A   A+  K+ F+ ++S+ELR+PL  II
Sbjct: 491 LVADLRKSQQTLEMQALQLAELAQNYADEKTKA-EDANRAKSEFLANMSHELRTPLNAII 549

Query: 589 GFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           GF++L+++   G L S K ++Y   I  S   LL+++NDILD++ ++AG M LN   + L
Sbjct: 550 GFSELMESGLFGPLGSDKYNEYCRDIRDSGRYLLDVINDILDMSRIEAGRMHLNLQPVEL 609

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           ++++ +  + ++ +  E  I +   +DG + S  AD++ L QI   +LSNA+ F+ +   
Sbjct: 610 DEVVTDSIRVMSVRADEKQITVAADTDGAV-SLEADKRALKQITLNLLSNAIKFTPENGR 668

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
           V ++  R     +  ++++G  IP+     +   F  V +      +G GLGL+I +S +
Sbjct: 669 VSVRTRRSARAALLVIEDSGIGIPKAALAKIGKPFEQVESQFTKTHKGSGLGLAIAKSLV 728

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            LHGG + I SS+   TT+  R+P
Sbjct: 729 ELHGGTMRIRSSEGVGTTVIIRLP 752


>gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 576

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 32/280 (11%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+     +  +  
Sbjct: 351 DDQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------ 711
              I++K+ +D   G    DR++  QI   +L+NA+ FS  G  VIL             
Sbjct: 411 LQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSQPGGWVILAVRQVPRSQAGVL 470

Query: 712 -----------AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
                       + DN  F+  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 EGDWPTYGFELPSSDNEHFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792
           GL++V+    LHGG V+++S  D G   V  +  R P+ E
Sbjct: 530 GLAMVKQLTELHGGCVAVASVKDLGTRFVVWLPIRPPASE 569


>gi|327193951|gb|EGE60826.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 769

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 193/421 (45%), Gaps = 35/421 (8%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            VI +++ R   I +  ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N
Sbjct: 349 QVIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 408

Query: 461 PAFRSLWKTEENRLSPGTH--IRNIAAT---CSRYYNESDGWDLFAAIITSFDDER---- 511
             F+  +   ++ L PGT   I N AA      R   ++DG            DER    
Sbjct: 409 THFQQAYGLPDSVLVPGTERSIVNAAAARPVIERRIADADGSGYSRTTEVQLADERWLQI 468

Query: 512 ----------KSLQGTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                      S+   + L+         S+  L  +I  L  ++  L       S    
Sbjct: 469 NERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLELQKAELSTANA 528

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
               EK  A   A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L S K  +Y  
Sbjct: 529 NYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYAR 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670
            I  S   LLN++NDILD++ ++AG ++L+   I L  L+ E  +  A    E NI I +
Sbjct: 588 DIHDSGKHLLNVINDILDMSKIEAGHLRLHRERIDLVPLIEESLRFTAIPAAEKNIVIEQ 647

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I  G   + +ADR+ + Q+   +LSNA+ F+  G  + ++  R +G    ++ + G  I
Sbjct: 648 RICSGM--ALMADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVTVTIADTGIGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      +   F  V + +   + G GLGL+I  S   LHGG + I S +   T I+ RI
Sbjct: 706 PRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRI 765

Query: 789 P 789
           P
Sbjct: 766 P 766


>gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 729

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/250 (38%), Positives = 139/250 (55%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+S  AE  L EK  A   A+  K+ F+ ++S+ELR+PL +IIGF DLL     G LN
Sbjct: 464 DITESKAAETLLQEKQIA-EAANRTKSEFLANMSHELRTPLNSIIGFADLLYEQVYGELN 522

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q + V  IS S   LLNL+N ILDL+ ++AG M+L+Y    L   LN +K  ++    
Sbjct: 523 ERQLKSVGNISKSGKHLLNLINGILDLSKIEAGKMELSYKQFELASKLNIIKNLLSPIAD 582

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
             N++I++  D  L S  AD  R +QI   ++ NA+ FS +   V ++ AR  GD +  +
Sbjct: 583 RKNVQIEISIDSSLSSIYADEARFVQIMYNLVDNAIKFSYENGLVKIE-ARKKGDLVEIT 641

Query: 723 VKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           V + G  I PED  K +F  F  V +    Q +G GLGLS+V+  + LHGG +   S   
Sbjct: 642 VTDTGIGIKPEDQSK-LFKPFSQVDSFLSKQFQGTGLGLSLVKQIVQLHGGDIWFRSKPG 700

Query: 780 GVTTINCRIP 789
             +T    IP
Sbjct: 701 EGSTFAFVIP 710


>gi|317475553|ref|ZP_07934815.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908257|gb|EFV29949.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 912

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 132/232 (56%), Gaps = 6/232 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +TD  R E+ L        ++D +K++F+ ++S+E+R+PL  I+GF+ +L T+       
Sbjct: 528 ITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILATA---EEEE 584

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++S+Y+  I  ++ +LL L++D+LD+A ++AG +  NYS++ LN L+NE++ +   ++  
Sbjct: 585 EKSEYINIIENNNQLLLQLISDVLDIAKIEAGSLDFNYSSLDLNVLMNELESTALMRITS 644

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            ++ +++I D      + +R RL QI   +L+NA+ F+ KG  +            F V 
Sbjct: 645 PDVCLEMIPDNDNCWVITERNRLSQIIINLLNNAIKFTQKGK-ITFGYKLQKEKIYFYVT 703

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  IP +    +F RF+   +  Q  G GLGLSI +S ++  GG + + S
Sbjct: 704 DTGCGIPAEKQDKIFERFIKLNNFAQ--GTGLGLSICKSIVDAMGGEIGVDS 753


>gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1070

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 137/265 (51%), Gaps = 11/265 (4%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           PLP  +  + F +VT+  + ++AL    E    A+  K+ F+ ++S+E+R+PL  I+G  
Sbjct: 663 PLPGEKVAVAFEDVTERQQVQQALVRAKEIAESANRAKSEFLANISHEVRTPLNGIMGML 722

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L   S++     +   Y+     SS  LL ++ND+LD   VDAG M++      L+DLL
Sbjct: 723 QLAMQSEV---PPELEDYIRTALESSRNLLRVLNDVLDFTKVDAGKMEIVDRDFSLDDLL 779

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           ++          +  I + + +   +G FV D  RL QI   ++ NA+ F+  GS V L+
Sbjct: 780 SQAVNFFRALAMDKKISLVLSAPRDIGRFVGDEGRLRQILFNLMGNALKFTDTGS-VTLE 838

Query: 712 A--ARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
           A    + GD    +F+V++ G  IP D    VF  F  V   +  + +G GLGL IV+  
Sbjct: 839 AWPVGEQGDATRILFAVRDEGIGIPTDKLGYVFESFTQVDGTYSRRYQGTGLGLPIVKRL 898

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           + L GG++S+ S +   TTI   +P
Sbjct: 899 VTLMGGNISVESMEGEGTTIFFVLP 923


>gi|209548532|ref|YP_002280449.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534288|gb|ACI54223.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 769

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 194/421 (46%), Gaps = 35/421 (8%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            VI +++ R   I +  ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N
Sbjct: 349 QVIRSNSGRVHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 408

Query: 461 PAFRSLWKTEENRLSPGTH--IRNIAAT---CSRYYNESDGWDLFAAIITSFDDER---- 511
             F+  +   ++ L PGT   I N AA      R   ++DG            DER    
Sbjct: 409 THFQQAYGLPDSVLVPGTERSIVNAAAARPVIERRIADADGPGYSRTTEVQLADERWLQI 468

Query: 512 ----------KSLQGTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                      S+   + L+         S+  L  +I  L  ++  L       S    
Sbjct: 469 NERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANA 528

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
               EK  A   A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L S K  +Y  
Sbjct: 529 NYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYAR 587

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670
            I  S   LLN++NDILD++ ++AG ++L+   I L  L+ E  +  A    E NI I +
Sbjct: 588 DIHDSGKHLLNVINDILDMSKIEAGHLRLHCERIDLVPLIEESLRFTAIPAAEKNIVIDQ 647

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            IS G   +  ADR+ + Q+   +LSNA+ F+  G  + ++  R +G  + ++ + G  I
Sbjct: 648 RISSGL--TLTADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRIDGAVLVTIADTGIGI 705

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      +   F  V + +   + G GLGL+I  S   LHGG + I S +   T I+ RI
Sbjct: 706 PRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRI 765

Query: 789 P 789
           P
Sbjct: 766 P 766


>gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium
           sp. ORS278]
          Length = 610

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 129/252 (51%), Gaps = 9/252 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD    E+AL     A  +AD  K  F+  +S+ELR+PL  IIGF+++L   ++  LN
Sbjct: 328 DVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQVLVLN 387

Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++ +Y + I+ S   LL++VN ILD++ +++G  +L          L      +A + 
Sbjct: 388 AARRREYAQLINDSGQHLLSVVNGILDMSKMESGHFELTPEPFAPRTALFNCCNLLALRA 447

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            EN + +   +   L     D +   QI   ++SNA+ F+ +G  V + A  D    +  
Sbjct: 448 RENGVDLAADAPHDLPVITGDPRAFKQIVINLVSNAIKFTERGGRVTVSAGVDGARLLLR 507

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DE 779
           + + G  I  D  K + + F       QRR  G GLGLSIV+S + LHGG +SI S  DE
Sbjct: 508 ITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVTLHGGEMSIESKLDE 567

Query: 780 GVTT-----INC 786
           G T      INC
Sbjct: 568 GTTVTIALPINC 579


>gi|90418498|ref|ZP_01226410.1| putative two-component signal transduction histidine kinase
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90338170|gb|EAS51821.1| putative two-component signal transduction histidine kinase
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 698

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 4/227 (1%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +KN F+  +S+ELR+PLT+I G   L+     G L  K +  VE    +S  L+ L+NDI
Sbjct: 215 VKNEFIATISHELRTPLTSIRGSLGLITAGVTGELPPKAAHMVEIAHNNSERLVLLINDI 274

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL  +++G M  +     L  LL++   S ++ M E  + I+++ +        D  RL
Sbjct: 275 LDLEKLESGKMPFDLQHTRLRPLLDQAISSSSSYMPERRVTIRLVDEAPDIEAKTDPNRL 334

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+F+ ILSNA+ FS  G TV +  AR   D++  SV + G  IPE   K +F +F    
Sbjct: 335 HQVFANILSNAIKFSPTGGTVTVTIARLGDDWVRMSVSDEGQGIPESFRKRIFGKFEQAD 394

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                Q+ G GLGLSI ++ +   GG +   + D G TT +  +P +
Sbjct: 395 ATDNRQKGGTGLGLSIAKTIVEKLGGRIGFDTGDTG-TTFHVDLPEQ 440


>gi|189465320|ref|ZP_03014105.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
 gi|189437594|gb|EDV06579.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
          Length = 381

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 136/240 (56%), Gaps = 8/240 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T  ++T   +AE  L +  E    AD  K++F+ ++S+E+R+PL  I+GF++LL ++ 
Sbjct: 116 VITVHDITRLKKAEVELHKAREKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLASA- 174

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S   +++Q++E + +++ +L  L+ DILDL+ ++AG ++  +S + +  L+ +++Q  
Sbjct: 175 --STEEEKTQFLEIVHSNNELLQQLIADILDLSKIEAGTLEFTFSEVDVKQLMLDIEQLF 232

Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             ++ +    I++I +      +   DR RL Q+ S  ++NA+ F+ +GS +     R  
Sbjct: 233 RMRLEDKAAVIQIIRETPADECIMYTDRNRLQQVVSNFMTNAVKFTDEGS-ITFGYNRCA 291

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F VK+ GS IPED    +F RFV       ++G GLGL+I E  I   GG + + S
Sbjct: 292 EGLYFYVKDTGSGIPEDKVNHIFERFVRVEQ--NKKGTGLGLAICEMIIRKLGGKIGVES 349


>gi|119385502|ref|YP_916558.1| putative PAS/PAC sensor protein [Paracoccus denitrificans PD1222]
 gi|119375269|gb|ABL70862.1| putative PAS/PAC sensor protein [Paracoccus denitrificans PD1222]
          Length = 531

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 170/402 (42%), Gaps = 38/402 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
           +L  + +   + + +   D    L W +D  G + WAN +Y    E       KA G++ 
Sbjct: 143 SLSLRAMEQELEILRSAMDHSPMLAWRQDPQGQVTWANSAYLNLAEV------KARGQTV 196

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
                 I                 +     G ++ Y     L+  G   +AI +  +  V
Sbjct: 197 WPLPRIIDLSARPVQPATSGGARRMQVDHDGQSRWYDCH--LHEIGGQTVAIALPADAAV 254

Query: 302 NDQ---------LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
             +         LT T+    +L + +AIFD++R LQ  N + ++L  +   FL   P+ 
Sbjct: 255 RAERSLREFVQTLTKTFA---DLPIGLAIFDRDRNLQLFNPALIDLTGLATGFLTARPTL 311

Query: 353 DELLEFLRSANKLPEQLNWKTWKE--NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              L+ LR A  +PE  ++++W+   N      SS  H + W LP GQT  V    +P G
Sbjct: 312 YAFLDRLREARMVPEPKDYRSWRNQMNTLEAAASSGHHVEMWSLPGGQTYRVTGRPHPDG 371

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
              ++FE++T ++ L  K+   + +  E +D L + VAVFG +G + +SN  +  LW   
Sbjct: 372 AVAFLFEDITSEISLTRKFRADLSLGAEVLDALEDAVAVFGANGDLLISNRRYADLWDAA 431

Query: 471 ENRLSPGT---HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               +PGT   H++     C      +    L  A+  +  DE   L+G +   +  +L 
Sbjct: 432 ----APGTLEGHVQVWTDACGASPGLA---ALREALNAALPDE--PLRGAMAGPAGGLLS 482

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR----AERALTEKNEALRKA 565
           + +  L  A+ +L+F     S+     A RA  +   A R A
Sbjct: 483 WGLRGLSGARLLLSFAAPVPSLPVGRDAPRAAHDPEPAERAA 524


>gi|322419044|ref|YP_004198267.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125431|gb|ADW12991.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 583

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 171/345 (49%), Gaps = 34/345 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + EG+ V  P G I L NPAF+ L+  +++    G  + +I    SR+           A
Sbjct: 256 MGEGIMVADPQGTITLVNPAFKGLFGLQDD--VEGRQLIDI----SRH----------PA 299

Query: 503 IITSFDDERKSLQGTLELLS-DSVLEYSI----IPLPNAQTMLTFVNVTDSVRAERALTE 557
           +  SF D   + Q  +E L   S  E S+    +PL     +   V V   +        
Sbjct: 300 LHESFRDIISTRQERIEELQLHSPKERSVLIHWVPLLEGVVLNGVVAVFHDI-------- 351

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
               +R+ ++I+  FV +VS+ELR+P+T I G+ + L    L +  S+ +++V+ + + +
Sbjct: 352 --SDIRQLEKIRRDFVANVSHELRTPVTIIKGYAETLIAGALEN-PSQAAKFVKIMYSHA 408

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L++D+L L+ +++G + L   ++ + D+   V   +  K+ E +I + +      
Sbjct: 409 DRLAVLISDLLTLSQLESGTIALETRSVAVYDIAEHVVALLEQKIRERSIGVDISGLKGA 468

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            + +AD  RL Q+   ++ NA+ ++  G +V L AA D+G  + +V++ G  IP      
Sbjct: 469 ANVLADPVRLEQVIVNLVDNAVKYTPAGGSVTLTAAEDDGRVVIAVRDTGIGIPPKDLPR 528

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +F RF  V  A      G GLGLSIV+  + LHGG VS  SS +G
Sbjct: 529 IFERFYRVDTARSRDEGGTGLGLSIVKHILQLHGGTVSAESSGQG 573


>gi|298387781|ref|ZP_06997331.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259386|gb|EFI02260.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 419

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 168/324 (51%), Gaps = 25/324 (7%)

Query: 470 EENRLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVL 526
           E  R+    H RN IAA     + +     +   I  +F ++R  K L  +++LLS+   
Sbjct: 79  EIKRVGDLLHCRNAIAAGECGKHEQCKLCCIRTFISKAFYEKRSFKKLDASMQLLSED-- 136

Query: 527 EYSIIPLP------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           E ++IP                + +LT  +VT+    +R L  + E    AD++K++F+ 
Sbjct: 137 EKTVIPCDVSVSGVYLKINGEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIA 196

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I+GF+ L+ T+   +   ++  Y + IS ++  LL LVNDI DL+ +D
Sbjct: 197 NMSHEVRTPLNAIVGFSGLMATA---TSEEEKKMYTDIISENNERLLRLVNDIFDLSQID 253

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFS 692
           AG++   YS    NDLL E++     +++EN + + ++ +  L   +  +++QR++Q+ +
Sbjct: 254 AGVLNFVYSEFDANDLLRELEGLFGMRLNENPL-VALVCEAHLEPIMMHSEKQRIIQVLT 312

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +L NAM F+  G            +  F V + G  IP++  + +F+RF       Q  
Sbjct: 313 NLLHNAMKFTKTGEIRFGCRMEGTDEVYFYVSDTGIGIPKEEQEKIFSRFTKLDREMQ-- 370

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL++ ++ ++  GG   + S
Sbjct: 371 GTGLGLTLSQTIVHNFGGRFGVES 394


>gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1055

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 146/275 (53%), Gaps = 12/275 (4%)

Query: 526 LEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           LE   IP       +T F ++T+  RAE AL +       A++ K+ F+ ++S+E+R+P+
Sbjct: 638 LEARNIPYKAKHVRVTEFRDITEQKRAEEALLQAKTQAETANQAKSEFLANMSHEIRTPI 697

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++G   LL+T+    L+++Q+ Y+   + ++  L  L+ DILDL+ V+AG M++  + 
Sbjct: 698 NGVMGMLQLLETT---PLDAEQASYIHMATEAANRLTRLLTDILDLSRVEAGKMEIREAP 754

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             + D+++ V    A      N+ ++  ++ G     V D  R+ Q+   ++ NA+ F+ 
Sbjct: 755 FQIQDIIDSVSGLFAVTARNKNVALECRLAPGMPEVLVGDEMRVRQVLFNLVGNALKFTE 814

Query: 704 KGSTVI---LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           +G  V+      A+D+GD+   F V + G  I ED    +F  F  V N+     +G GL
Sbjct: 815 RGRVVMDITALPAKDDGDYRVHFRVTDTGIGIAEDRLGDIFEPFRQVENSLTRNYQGAGL 874

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSIV+  + L GG ++I S+    T+ +  +P K
Sbjct: 875 GLSIVQRLVGLMGGTITIESTLGQGTSAHVVLPFK 909


>gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 885

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 122/227 (53%), Gaps = 2/227 (0%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD +K  FV   S+ELR+PLT+I G+ DLL  + LG L  +Q Q++  +  +   L  ++
Sbjct: 643 ADRMKTEFVATASHELRTPLTSISGYIDLLMLNTLGPLTEQQRQFLSVVKNNIERLNAIL 702

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND+LD++ +++G ++L    I L++L+     SI  +     I + +     L   +AD 
Sbjct: 703 NDLLDVSRIESGKVRLQRKPINLDELIQSTVMSIHQQWSGKQISLALDVPDDLPPMIADP 762

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV- 743
           +R+ QI + ++SNA  ++  G  + +  +        +VK++G  I  D  K +F RF  
Sbjct: 763 ERMRQIVTNLISNAYKYTRDGGRIDVVVSNGGDSVTLAVKDSGVGIAADDQKHIFTRFFR 822

Query: 744 -SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             N  + Q  G GLGL+I +S + LHGG +   S +   TT N ++P
Sbjct: 823 SENPLKEQAGGTGLGLNITKSLVELHGGKIWFDSEEGRGTTFNVQLP 869


>gi|15888325|ref|NP_354006.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15155995|gb|AAK86791.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 778

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 194/421 (46%), Gaps = 36/421 (8%)

Query: 401 HVIVTSN-PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            VI T+N PR   I +  ++T Q  L  +Y    +   + I+  SE   ++  + R+ + 
Sbjct: 352 QVIRTNNGPR--VIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMC 409

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS------FDD---- 509
           N  ++  +   ++ L  GT    + A  +R   E    D   + ++        DD    
Sbjct: 410 NIHYQKAYGLPDSVLVAGTEKSTVYAAAARPVVERRVADPDQSGLSRTTEVQLADDRWLQ 469

Query: 510 --ERKSLQGTL--------------ELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             ER++  G L              E L DS   L  +I  L  +Q  L       S   
Sbjct: 470 INERRTRDGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELSDAN 529

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610
              L EK  A + A+  K+ F+ ++S+ELR+PL  I+GF+++L+    G + S K S+Y 
Sbjct: 530 ANYLAEKERA-QAANRAKSEFLANMSHELRTPLNAILGFSEILQNEMFGPVGSPKYSEYA 588

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LLN++NDILD++ ++AG M++N  TI L  L+ E  +  A +  + NI ++
Sbjct: 589 RDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITVQ 648

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 L +   DR+ + QI   ILSNA+ F+  G  + L+        I ++ + G  I
Sbjct: 649 QKVCAGL-TMQGDRRAMKQIMLNILSNAVKFTGDGGRIALRTHVHEAAMILTIADTGIGI 707

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P    + +   F  V + +   + G GLGL+I  S + LHGG + I S +   T +   I
Sbjct: 708 PAQALQKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVKLHGGTMKIRSCEGRGTVVTIII 767

Query: 789 P 789
           P
Sbjct: 768 P 768


>gi|291279597|ref|YP_003496432.1| hypothetical protein DEFDS_1208 [Deferribacter desulfuricans SSM1]
 gi|290754299|dbj|BAI80676.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 816

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 137/247 (55%), Gaps = 3/247 (1%)

Query: 546 TDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           T+ ++ ++  L E ++ L K  + KN F+ ++S+ELR+PL +I+G T+L+   K   L++
Sbjct: 263 TEELKVQKIELEEYSKRLNKLQQYKNEFIANMSHELRTPLNSIVGLTELI--LKNNQLDN 320

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +  + ++ I+ S   LLN++NDILDL+ +++G + L    I L + ++ V   I  + +E
Sbjct: 321 ELKEKLKIINLSGKQLLNIINDILDLSKIESGKIDLEIEEIDLTETIDYVSNIIKPQCNE 380

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            NI  KVI   K      D+ +L QI   +LSN++ ++ +   + L    D    I  VK
Sbjct: 381 KNISFKVIFKAKNYLINTDKYKLTQILLNLLSNSVKYTEENGLIELIIEEDTKYIIIHVK 440

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IPED+ +++F  FV+   +   +G GLGL + +  +NL GG +++ S     T  
Sbjct: 441 DTGIGIPEDLMQNLFEPFVTMGRKFNVQGTGLGLPLTKKLVNLLGGKIAVKSKVGEGTIF 500

Query: 785 NCRIPSK 791
              IP +
Sbjct: 501 TVYIPKE 507


>gi|56698679|ref|YP_169056.1| hypothetical protein SPO3868 [Ruegeria pomeroyi DSS-3]
 gi|56680416|gb|AAV97082.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 500

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 168/369 (45%), Gaps = 15/369 (4%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
            ++  D   + VW+ D  G I W N +Y        ++ +K  G + +LF          
Sbjct: 140 LRLAMDQAPYPVWYLDGDGGIRWCNAAYV-------MLARKVRGRNPELFDPLFPDTSDI 192

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID----VSKEITVNDQLTHTYE 310
            S  +K    +++  E      + +V V    G    A+D    V  EI   + +    +
Sbjct: 193 GSPGKKTRI-SITIGETRTKLWFDVVIVPQDTGCLCYAMDINAVVDAEIAQRNFVQTLAK 251

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
               L++ +AIFD+NR L   N + ++L  +   FL++ P      + LR+ N +PE  N
Sbjct: 252 TFAQLSIGLAIFDRNRQLALFNPALIDLTCLPADFLSSRPEVSSFFDRLRNLNMMPEPKN 311

Query: 371 WKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
           +  W++ +  + +++    +++TW LP+G    V    +P G   ++FE++T ++ L  +
Sbjct: 312 YGGWRQQMNDLLQAASKGNYQETWSLPSGSVYSVSGRPHPDGAVAFLFEDITAEITLTRR 371

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           + + +++    +DHL   +AVF  DG +  SN A+  LWK++  R      I +   T  
Sbjct: 372 FRSELELGQAVLDHLDAAIAVFASDGSLAFSNAAYHQLWKSDPERSFAQVTILDATRTWQ 431

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                +  W      + S ++ R   +G ++L S + L  ++ P+ N  T+++F  + D 
Sbjct: 432 DLCTATPVWGEIRDFVDSREN-RVEWEGQVQLRSGANLTCTVSPIQNGSTLISFTTLIDD 490

Query: 549 VRAERALTE 557
           +    A  E
Sbjct: 491 LARSPAQAE 499


>gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1170

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L ++ + L++A   K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q Q+ 
Sbjct: 474 AQLMLEQRADELQRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPAGNLSEEQVQFA 533

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I ++   LL L+NDILD++ V+AG ++++    +L  L++ +K     +  E  +   
Sbjct: 534 RSIYSAGNDLLTLINDILDISKVEAGKLEVHPELTILARLVDGMKSLFLPQAMEKALSFS 593

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V ++D    +   DRQRL QI   +L+NA  F+ KGS  +    RD G   F+V++ G  
Sbjct: 594 VELADDLPPTLFTDRQRLEQILKNLLANAFKFTEKGSVTLRVEPRDGGMLAFAVRDTGIG 653

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +   ++F  F        RR  G GLGLSI     NL GG + + S+    +T    
Sbjct: 654 IAPEQQAAIFEAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLV 713

Query: 788 IP 789
           +P
Sbjct: 714 LP 715


>gi|144899289|emb|CAM76153.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Magnetospirillum gryphiswaldense MSR-1]
          Length = 753

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 2/244 (0%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +R  R +   N  L ++D  K+ F+ H+S+ELR+PL  ++GF+++L     G +  +QS+
Sbjct: 505 LRQLRTIRLLNLQLAESDRAKSRFLAHMSHELRTPLNAVLGFSEMLGMGIYGQVVQRQSE 564

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            + ++  ++  LLN++ND+LDL+ ++AG   +    + ++ L    +Q +++   E  + 
Sbjct: 565 AIGHVRDAARHLLNMINDVLDLSKIEAGGFDIEDEELEISALATYAQQLLSSLTREAEVT 624

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I+V     L    ADR+ LLQI   +LSNA+ F+    +V +    D      +V + G 
Sbjct: 625 IRVEVPSALPRLRADRRMLLQILINLLSNAIKFTPPQGSVHVGCREDASGLCLTVHDTGI 684

Query: 729 SIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D    V   F       +  R+G GLGL IV+S + LHGG + +SS+    T +  
Sbjct: 685 GIAADQLARVLEPFRQTEDNMEIARKGTGLGLPIVKSLVELHGGTIHLSSTLGQGTCVTL 744

Query: 787 RIPS 790
             P 
Sbjct: 745 TFPP 748


>gi|222148029|ref|YP_002548986.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735017|gb|ACM35980.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 790

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 136/522 (26%), Positives = 227/522 (43%), Gaps = 62/522 (11%)

Query: 323 DQNRYLQFH-NRSFVELWEIDLA------------FLATNPSNDELLEFLRSANKL-PEQ 368
           D NR ++   +R    LW+ DLA             L   PSN E L F  +A  + P+ 
Sbjct: 254 DSNRRVETALSRGRCGLWDFDLASRKLVWSRSMFDILGLPPSN-EPLGFADAARLMHPDD 312

Query: 369 LNWKTWKENIFSVYKSSETHKDT---WHLPNGQTL------HVIVTSNPRGGTIWMFENL 419
            N       I    +  + H D        NG  +       VI TS+     I +  ++
Sbjct: 313 GNLYALARTI---GRDGDRHIDQVFRMRHANGHYVWLRARAQVIRTSSGSPHVIGIAMDV 369

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q  L  +Y    +   + I+  SE   ++  + R+ + N  F+ ++   ++ L PG  
Sbjct: 370 TEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNAHFQHVYGLPDSVLVPGVE 429

Query: 480 I-------------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--- 523
                         R IA   ++  + +    L        ++ R    G + + +D   
Sbjct: 430 RAVVDAAAARPIIQRRIADPSAKGSSRTTELQLADERWLQINERRTRDGGLVSVGTDITL 489

Query: 524 ------------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
                         L  +I  L ++Q  L       S   E+ L EK  A   A++ K+ 
Sbjct: 490 LKRHQERLREQERRLMATIGDLSSSQKKLERQKAELSEANEKYLAEKQRA-EAANKAKSE 548

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDL 630
           F+ ++S+ELR+PL  I+GF+++L T   G + S K  +Y   I  S   LLN++NDILD+
Sbjct: 549 FLANMSHELRTPLNAILGFSEILSTGMFGPIGSPKYGEYARDIHDSGKHLLNVINDILDM 608

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQ 689
           + ++AG M L    +    L++E  +       + NI I + I+ G   +  ADR+ L Q
Sbjct: 609 SKIEAGHMLLKCENVDFASLIDETLRLTTISAKDKNIAIEQRIASGL--AMTADRRALKQ 666

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           I   ILSNA+ F+++G  + ++A + +G     V + G  IP+     +   F  V + +
Sbjct: 667 ILLNILSNAVKFTNEGGRISVRAHKIDGAVRLLVSDTGIGIPKQAISKIGQPFEQVQSQY 726

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G GLGL+I  S I LHGG + I S +   T ++  +P
Sbjct: 727 AKSKGGSGLGLAISRSLIMLHGGSLRIRSREGKGTVVSINVP 768


>gi|114776540|ref|ZP_01451585.1| Two component system histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553370|gb|EAU55768.1| Two component system histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 1017

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 25/247 (10%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT  NEAL +A++ K+ F+ ++S+ELR+PLT+I GF++ L    +G LN  Q++Y++ I+
Sbjct: 308 LTSANEALTRANQAKSQFISNMSHELRTPLTSINGFSEFLIDGFVGPLNETQTKYLKNIN 367

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRIKV 671
            S   LL L+N ILDLA ++AG M L    + +  LL+E   V Q  ATK    ++R+ +
Sbjct: 368 ISGKHLLELINGILDLAKIEAGKMTLKLEKVDVAALLDEILLVLQGYATK---TSVRLLL 424

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGD------ 718
             D  +   V DR +  QI   + SNA+ FS +G  V +        A + N D      
Sbjct: 425 ECDAAIPGIVLDRTKFKQILYNLCSNAIKFSPQGGEVRIVVDYNNSAAGQHNDDELESYA 484

Query: 719 -FIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               ++ + G  I PED    +FN F     +H     G GLGL++ +  + +HGG + +
Sbjct: 485 RLTVAIHDEGIGISPEDQVH-IFNPFEQADGSHSRNYEGTGLGLTLTQRLVEMHGGSIEV 543

Query: 775 SSS-DEG 780
           +S+ D+G
Sbjct: 544 NSAPDKG 550


>gi|255033986|ref|YP_003084607.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254946742|gb|ACT91442.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 868

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 133/245 (54%), Gaps = 15/245 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T+    E  L +      K+  +K+ F+ +VS+E+R+PL  IIGFT+LL    +G 
Sbjct: 342 FRDITERANYEATLEKARSLAEKSVRVKDIFLSNVSHEIRTPLNAIIGFTNLL----MGE 397

Query: 602 LNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +  ++SQ YV YI  +   LL L+NDILD + ++AG + L  + + + +L +E+   +  
Sbjct: 398 VTDQKSQEYVGYIQYAGKNLLELINDILDFSKIEAGQVHLEKAPVSIRELADEISAIMHH 457

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------ 713
           +  E  I  + +    L  F+  D+ RL QI   +  NA+ F+ KGS V L+ A      
Sbjct: 458 RAVEKGIVYEALLADGLPEFIETDKLRLTQILLNVCGNAVKFTEKGS-VKLRVAPIGEPL 516

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
            D  +  F VK+ G  IP+D  K VFNRFV       R   G GLGLSIV+S + L  G 
Sbjct: 517 NDVQNIRFEVKDTGVGIPKDKLKEVFNRFVQATESTTRVFGGTGLGLSIVKSLVQLFEGT 576

Query: 772 VSISS 776
           +++ S
Sbjct: 577 LNLES 581


>gi|60682196|ref|YP_212340.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493630|emb|CAH08419.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1015

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 139/247 (56%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 630 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 686

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++ +LL L++DILDL+ ++AG ++  YS I LN  L +++ ++  K+  
Sbjct: 687 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 746

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           ++++++ +    +     ++ RL Q+   +++NA+ F+S+GS       R   +  F V 
Sbjct: 747 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVT 805

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  +S+F RFV      Q  G GLGLSI  + +   GGH+ + S +   +T 
Sbjct: 806 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEEGKGSTF 863

Query: 785 NCRIPSK 791
              +P K
Sbjct: 864 WFSLPYK 870


>gi|240850171|ref|YP_002971564.1| two-component sensor histidine kinase [Bartonella grahamii as4aup]
 gi|240267294|gb|ACS50882.1| two-component sensor histidine kinase [Bartonella grahamii as4aup]
          Length = 773

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 184/398 (46%), Gaps = 38/398 (9%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q DL  +         + I+++SE   ++  +GR+ +SN  F       +  L  G  
Sbjct: 382 TAQADLRIR---------DAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQILQSGIQ 432

Query: 480 IRNIAATC----SRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSVLEYS 529
              + A      S Y  + DG     +I  + D      +ER++  G L  +   + E  
Sbjct: 433 RATVEAMARPAISEYPLKDDGTGNLTSIRQTADGCWLKINERRTQDGGLVCIGTDISELK 492

Query: 530 IIPLP---NAQTMLTFVNVTDSVRAE------------RALTEKNEALRKADEIKNSFVQ 574
                   + + + +F+      R              ++L  + E    A++ K+ F+ 
Sbjct: 493 QQQEKFEDSERRLFSFIQELKRARGSAQQRASEVEKLNKSLKAEKERAESANKAKSEFLA 552

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATV 633
           ++S+ELR+PL  I+GF+D++  S  G L S++  +Y+  I  S T LL L+NDILD++ +
Sbjct: 553 NMSHELRTPLNAILGFSDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKI 612

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG   L+     L  +++E  +++  +  E NI +      +L + V D + + QIF  
Sbjct: 613 EAGRFSLDCKNTDLEPIISEAVRTLTPQAQEKNIVVTTNITPELHAEV-DGRAMKQIFLN 671

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           ++SNA+ F+  G  + + A +   + IF + + G  IP+   K +   F  V N      
Sbjct: 672 LISNAVKFTPSGGNIDVCAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSH 731

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL+I  S + LH G + I+S +   TT+   +P
Sbjct: 732 TGSGLGLAISRSLLELHKGKLEITSKEMKGTTVTIIMP 769


>gi|265764347|ref|ZP_06092915.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256955|gb|EEZ28301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1039

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 139/247 (56%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 654 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 710

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++ +LL L++DILDL+ ++AG ++  YS I LN  L +++ ++  K+  
Sbjct: 711 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 770

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           ++++++ +    +     ++ RL Q+   +++NA+ F+S+GS       R   +  F V 
Sbjct: 771 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVT 829

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  +S+F RFV      Q  G GLGLSI  + +   GGH+ + S +   +T 
Sbjct: 830 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEEGKGSTF 887

Query: 785 NCRIPSK 791
              +P K
Sbjct: 888 WFSLPYK 894


>gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5]
          Length = 651

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 144/257 (56%), Gaps = 15/257 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           +VT+  + E+ L E       +D +K++F+ ++S+E+R+PL  I+GF++LL +T  +G  
Sbjct: 267 DVTELKQTEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAIVGFSNLLAETDDIG-- 324

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y+  +  ++ +LL L++DILDL+ ++AG  + NY  + +N +  E   S++ K+
Sbjct: 325 --ERREYMRVVEENNELLLKLISDILDLSKIEAGTFEFNYGRVDVNRMCEETVCSLSLKV 382

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +  + +           V D+ RL+Q+ +  ++NA+ F+ +GS + L    + G+ +F 
Sbjct: 383 KDKPVELIFGEHDAQCCVVGDKNRLIQVITNFINNAVKFTDEGS-ITLGYRTEGGELLFH 441

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG- 780
           V++ GS I E+  +S+F+RFV      Q  G GLGLSI +S +   GG + + S    G 
Sbjct: 442 VEDTGSGISEEHRQSIFDRFVKLNSFAQ--GTGLGLSISKSIVEQMGGRIGVESEVGRGS 499

Query: 781 -----VTTINCRIPSKE 792
                +  + C  P K+
Sbjct: 500 RFWFTIPAVTCDAPEKK 516


>gi|53713997|ref|YP_099989.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216862|dbj|BAD49455.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1053

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 139/247 (56%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 668 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 724

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++ +LL L++DILDL+ ++AG ++  YS I LN  L +++ ++  K+  
Sbjct: 725 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 784

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           ++++++ +    +     ++ RL Q+   +++NA+ F+S+GS       R   +  F V 
Sbjct: 785 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVT 843

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  +S+F RFV      Q  G GLGLSI  + +   GGH+ + S +   +T 
Sbjct: 844 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEEGKGSTF 901

Query: 785 NCRIPSK 791
              +P K
Sbjct: 902 WFSLPYK 908


>gi|301163674|emb|CBW23228.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1015

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 139/247 (56%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 630 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 686

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++ +LL L++DILDL+ ++AG ++  YS I LN  L +++ ++  K+  
Sbjct: 687 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 746

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           ++++++ +    +     ++ RL Q+   +++NA+ F+S+GS       R   +  F V 
Sbjct: 747 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSQGSIRFGYEHR-GKELYFYVT 805

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  +S+F RFV      Q  G GLGLSI  + +   GGH+ + S +   +T 
Sbjct: 806 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEEGKGSTF 863

Query: 785 NCRIPSK 791
              +P K
Sbjct: 864 WFSLPYK 870


>gi|270295411|ref|ZP_06201612.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274658|gb|EFA20519.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 388

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 145/253 (57%), Gaps = 8/253 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T  ++T   + E  L    E    AD  K+ F+ ++S+E+R+PL  I+GF++LL ++ 
Sbjct: 126 VITVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLASA- 184

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S + +++Q++E + +++ +L  L+ DILDL+ ++AG ++  +S + +N ++++++Q  
Sbjct: 185 --STDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMSDLEQQF 242

Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             ++ E    ++++ +     +    DR RL Q+ S  ++NA+ F+ +GS  +     + 
Sbjct: 243 RMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQEGSITLGFRPYEE 302

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G + F VK+ G+ IP++    VF RFV    + ++ G GLGLSI ++ +   GG + + S
Sbjct: 303 GLY-FYVKDTGTGIPQEKLPHVFERFVK--LKQEKNGTGLGLSICQTIVRKLGGEIGVES 359

Query: 777 SDEGVTTINCRIP 789
            +   +T    +P
Sbjct: 360 EEGAGSTFWFTLP 372


>gi|158523280|ref|YP_001531150.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158512106|gb|ABW69073.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 565

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 6/247 (2%)

Query: 547 DSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           D +R+  A L +  +  R AD +K++F+  +S+ELR+PL +IIGFT +L     G LN +
Sbjct: 314 DRIRSRTAELADAMKKARAADHLKSAFLATMSHELRTPLNSIIGFTGMLLQELPGPLNEE 373

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q + +  +  S+  LL L+ND+LD++ ++AG + L   T  L   + +    +A    +N
Sbjct: 374 QKKQMGMVQTSARHLLALINDVLDISKIEAGQLSLAPVTFDLRSSIEKTAALVAPLAEKN 433

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I +KV     +G    D++RL Q+   +L+NA+ F+  GS V +    D G ++ SV +
Sbjct: 434 EIDLKVEIGKDVGDMTTDQRRLEQVVLNLLNNAVKFTETGS-VSINCRTDTGQYVISVAD 492

Query: 726 NGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I PED+ + +F  F  V      +  G GLGLSI +  + + GG + + S     +
Sbjct: 493 TGIGIQPEDVAE-LFQPFHQVDTGLSRRHEGTGLGLSISKRLVAMMGGAIEVQSEPGKGS 551

Query: 783 TINCRIP 789
           T   R+P
Sbjct: 552 TFTVRLP 558


>gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 605

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 130/249 (52%), Gaps = 3/249 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD  + E AL     A  +AD  K  F+  +S+ELR+PL  IIGF+D++       L+
Sbjct: 321 DVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSDMIVQEATLPLD 380

Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++ +Y + I+ S   LL++VN ILD++ +++G  ++        ++L      +A K 
Sbjct: 381 ATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLSGSNLLALKA 440

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +N+I +       L   V D +   QI   ++SNA+ F+ +G  V + A  +    +  
Sbjct: 441 RDNDIELVTRVPENLPQMVGDPRAFRQIVLNLVSNAIKFTERGGRVTISARVEGARMVLR 500

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V +NG  I ++  K + + F       QRR  G GLGLSIV+S + LHGG + + S  E 
Sbjct: 501 VVDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGEIDVQSKVEE 560

Query: 781 VTTINCRIP 789
            TT+   +P
Sbjct: 561 GTTVTVMLP 569


>gi|56479140|ref|YP_160729.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56315183|emb|CAI09828.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 179/372 (48%), Gaps = 21/372 (5%)

Query: 418 NLTVQVD---LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            L VQ D   LE+K+        E +D + +G+ +  P G I ++N     L+  + + L
Sbjct: 115 QLKVQRDSKSLESKFR-------ELLDSMPDGIVIVNPTGHILIANRQAEWLFGYDRDEL 167

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I ++     R  ++      F+   T        L G  +  ++  +E S+ PL 
Sbjct: 168 R-ARPIEDLLPQRFRSAHKGHRSHYFSTPRTRAMGAGLELYGLRKDGTEFPVEISLSPLK 226

Query: 535 NAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
             +T   M    +V++    E+AL EKN  L  A+  K+ F+  +S+ELR+PL  +IGFT
Sbjct: 227 TEETPVVMSAIRDVSERRGFEQALQEKNLELLAANRAKDHFLASMSHELRTPLNAVIGFT 286

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             L     G LN +Q++ +E +  ++  LL L+ND+L+LA ++AG ++LN+  I    L+
Sbjct: 287 GTLLMKLPGELNPEQTRQLEIVRNNARHLLALINDLLNLAKIEAGKIELNFEPIDCGALV 346

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---V 708
            E+  S+  +     + + + +      F  DR+ L QI   ++ NA+ F+  GS    +
Sbjct: 347 GEIAASLRPQALSKGLELILATQSDPIVFETDRRALSQIIINLVGNAIKFTLHGSVRIDL 406

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFI 765
           +L+ A        SV + G  I E+   S+F  FV   H  + +GV   GLGL +     
Sbjct: 407 VLEEAGKKRRLALSVSDTGPGIGEEELSSLFEAFV-QGHASRMKGVEGTGLGLHLSRKLA 465

Query: 766 NLHGGHVSISSS 777
            L GG +S +S+
Sbjct: 466 VLLGGELSCTST 477


>gi|183220306|ref|YP_001838302.1| two-component sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910423|ref|YP_001961978.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775099|gb|ABZ93400.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778728|gb|ABZ97026.1| Putative two-component sensor protein with CheY-like receiver
           domain [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 655

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 142/253 (56%), Gaps = 13/253 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F ++TD   AE  L +  +   +A++ K+ FV ++S+E+R+PL  +IGF +LL T+ 
Sbjct: 241 VVHFNDITDRKNAEIHLIQAKKEAERANQAKSDFVANMSHEIRTPLNGVIGFNELLMTT- 299

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+S Q +YV+   +S+  LL ++NDILD++ ++AG + LN +   L  ++ +    +
Sbjct: 300 --NLDSDQKEYVKNAISSAHGLLGIINDILDISKIEAGKLVLNETISNLKHIVKDSLGVL 357

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILK-----A 712
             +  E NI++    + KL  + V D  RL QI   +L NA+ F+ KGS VILK     A
Sbjct: 358 QWRAKEKNIQLDFEVNPKLPEWIVVDATRLRQILINLLGNAVKFTEKGS-VILKIDSEIA 416

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             +     FS+K+ G  IPE    ++F  F        RR  G GLGL I +S ++L GG
Sbjct: 417 ENEKIKLNFSIKDTGIGIPESHKPNLFQSFWQGESNSTRRFGGTGLGLRITKSLLDLMGG 476

Query: 771 HVSISSSDEGVTT 783
            +   SS+EG  T
Sbjct: 477 QIDF-SSEEGKGT 488


>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1149

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 180/374 (48%), Gaps = 26/374 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG--THIR 481
           +L  +YN+++K Q E     ++G+ V    G +   N  F  +W    N +  G    I 
Sbjct: 486 NLLKRYNSVLKAQSEAA---TDGILVVNERGIVSNFNRRFCKIWGLSTNLMDVGRPEKIW 542

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQT- 538
           N+A+        +D    F   +   +DE ++ +  L+       E + IP+  P  ++ 
Sbjct: 543 NVASK-----QVADSEAFFERAMKISEDETETFKDVLDFEDGRTFERTSIPISSPLGESY 597

Query: 539 --MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +  F  VT+  R+E  L        +A+  K+ F+ ++S+E+R+P+  IIG T LL  
Sbjct: 598 GRVWFFHEVTEQKRSEERLRATMREAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLLSE 657

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +L ++Q  YV+ I ASS  LL ++NDILD + +++G +++      L D + E   
Sbjct: 658 T---TLENEQHDYVDTIRASSEALLVVINDILDFSKIESGKLEIENIMFDLRDCMEEAID 714

Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LK 711
           ++A +  E  + +  +   ++ GS + D  RL Q+   ++ NA+ F++KG  V+      
Sbjct: 715 TLAIQATEKGLDVSYVFGKEVPGSLLGDPTRLRQVIVNLIGNAVKFTAKGGVVVRVDPFH 774

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
              D+    F V + G  IP D    +F  F        R+  G GLGL+I ++ + L G
Sbjct: 775 IKDDDVILHFKVTDTGIGIPADRIDRLFGSFSQVDASTTRKYGGTGLGLAISKNLVELMG 834

Query: 770 GHVSISSSD-EGVT 782
           G + + S D EG T
Sbjct: 835 GSMWVESEDGEGST 848


>gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 969

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 215/495 (43%), Gaps = 62/495 (12%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS-----NDELL--EFLRSANK 364
           L N+   + + D +  +Q  NR  +EL ++  AF+A  P+     N +L   EF+RS + 
Sbjct: 334 LENMDQGLMMVDADDRVQVCNRRALELLDLPAAFMAQKPTFTAVRNYQLAQNEFVRSDDA 393

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ-- 422
                 ++ W   +       + H      PNG  L +       GG +  + ++T +  
Sbjct: 394 ------FRAW---VARAGLEPKEHTYERERPNGTVLEIRTVPLAGGGAVRTYTDITARHG 444

Query: 423 -----VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE-NRL 474
                 + E +Y  L        D++S+ + +   DGR    +PA  ++  +  EE +R+
Sbjct: 445 AEQARRESEARYRLLA-------DNVSDLIVLGHADGRRSYISPAVHAMLGYTVEEAHRI 497

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--------LSDSVL 526
                          + +  D   +FA   TS   ER +      L         +++V 
Sbjct: 498 G-----------MREWLHPEDLGRVFA-TTTSLSPERPTASVVYRLRHKAGHYVWAEAVF 545

Query: 527 EYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +   +      T++T + +VT+ VR ER L +   A      +K  F+ ++S+ELR+PLT
Sbjct: 546 QR--VEDAGEVTIITAIRDVTERVRQERRLEQAKVAAEAGARVKAEFLANMSHELRTPLT 603

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G  DLL      SL++ Q   +     +   LL +VNDILD + ++AG M +     
Sbjct: 604 GMLGVHDLLAGDT--SLSAAQRHLIGLAQEAGRSLLAIVNDILDFSKIEAGQMAIERVPF 661

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
            L  L+   ++ +A       +R+    +G +   +V D  RL QI   + SNA+ F+ +
Sbjct: 662 SLRALVESCRELVAESAKGKPLRLVAEIEGDVPDWYVGDPTRLRQILLNLASNAVKFTPQ 721

Query: 705 GSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           G   + +++A   G     V + G  IP D    +F RF     +   Q  G GLGL I 
Sbjct: 722 GEIALRVRSAAGTGRVRVEVTDTGIGIPADKLPLLFERFSQADTSTTRQYGGTGLGLVIC 781

Query: 762 ESFINLHGGHVSISS 776
           +  + L GG + + S
Sbjct: 782 KRLVELMGGAIGVES 796


>gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 892

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 154/287 (53%), Gaps = 9/287 (3%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           ER  L G  E  S  VL+ S++P+    N   + +F+++++  + E  L +   A   A+
Sbjct: 287 ERMLLNGKGE--SFPVLK-SVVPVKIGENEYLIESFIDLSERKKTEEELLQAKLAAESAN 343

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+ ++S+ELR+PLT IIGF+D++     G  + +  +++  I+ S   LL L+N+
Sbjct: 344 RAKSEFLTNMSHELRTPLTAIIGFSDVMLGGISGEFSEQNKKFLNNIANSGKHLLTLINN 403

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ ++AG M+L +    ++++ N+ +   +    + +I +K   D ++  + ADR R
Sbjct: 404 ILDLSKIEAGKMELEFEMFSVSEVFNDTRAVTSALALKKDISMKYNVDSEILVY-ADRVR 462

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
             QI   ++SNA+ F+    +VI+ A +       SV + G  I E+  K +F  F  + 
Sbjct: 463 FKQIIYNLVSNAIKFTPDRGSVIVSALKTEDSVRISVSDTGIGISEENQKLLFQPFRQID 522

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +      G GLGL++V+ F+NLHGG V   S     +T    +P K
Sbjct: 523 ASINRHYEGTGLGLALVKKFVNLHGGRVWAESEPGKGSTFEFELPLK 569


>gi|253567011|ref|ZP_04844462.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944135|gb|EES84644.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1039

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 138/247 (55%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 654 ITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 710

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++ +LL L++DILDL+ ++AG ++  YS I LN  L +++ ++  K+  
Sbjct: 711 EKQEYVSIIENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKS 770

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           ++++++ +    +     ++ RL Q+   +++NA+ F+S+GS       R   +  F V 
Sbjct: 771 DDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVT 829

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  +S+F RFV      Q  G GLGLSI  + +   GGH+ + S     +T 
Sbjct: 830 DTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSICRTLVEHMGGHIGVDSEQGKGSTF 887

Query: 785 NCRIPSK 791
              +P K
Sbjct: 888 WFSLPYK 894


>gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 957

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 170/363 (46%), Gaps = 18/363 (4%)

Query: 440 IDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +D+L  GVAV    PD R +  N  F   + T    ++        A     +  +  G 
Sbjct: 451 LDNLPVGVAVNTVSPDVRFEYMNELFPRFYGTTRESITAPEGFWEAAYPEPEFRGKIRG- 509

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNAQTMLTFV-NVTDSVRAERA 554
            +  A   S   ER        +  D    +    IPLP    M++ V +VT+  +AE+A
Sbjct: 510 -MVTAGCASGSQERMCWADVPIMRQDETRFVTARNIPLPGTNLMISTVWDVTERKQAEQA 568

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    +A   A + KN F+ ++S+ELR+PL  ++    LL+ +    LN +Q++YV    
Sbjct: 569 MARAKDAAESASQAKNEFLANMSHELRTPLNGVMAMMQLLEMTP---LNGEQTEYVHLAR 625

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  L  L++D+LD++ ++AG +++      + +LL  V +   T      + +++ +D
Sbjct: 626 KSSERLTRLLSDLLDISRIEAGKVEIREEAFAVQELLQSVSELFNTSAQSKGVSLELSTD 685

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGS 728
             +   +  D  RL Q+   ++ NA+ F+ +G      T +     +    +FSV + G 
Sbjct: 686 PSVPPRLKGDAARLRQVLFNLVGNALKFTDQGFVRVELTALPPRGLEQCRILFSVMDTGI 745

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +    +F  F  V  A+  + +G GLGL+IV   + L GGH+++ S     T ++ 
Sbjct: 746 GIPSEKQHDLFTPFFQVEGAYTRRYQGAGLGLAIVRRLVELMGGHITLDSIFGEGTEVHV 805

Query: 787 RIP 789
            +P
Sbjct: 806 ALP 808


>gi|209523505|ref|ZP_03272059.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495910|gb|EDZ96211.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1391

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 183/358 (51%), Gaps = 38/358 (10%)

Query: 453  DGRIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT--SFDD 509
            DG IKLS     S LW+T ++      +++++ A  + Y+ + +G      II+    D 
Sbjct: 800  DGLIKLSEIKITSPLWQTHQS-FEESDNLKSMLAIATFYHGQPNG------IISLHQCDH 852

Query: 510  ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK----- 564
             R      +ELL ++V     I + +AQ +      +      + LT KN  L+K     
Sbjct: 853  NRVWTLDEIELL-EAVARQLGIAIAHAQLL------SQEKEQRQELTYKNIKLKKMTQEA 905

Query: 565  --ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              A+  K+ F+ ++S+E+R+P+  ++GFTDLL+++     + K + Y++ I++S   LL 
Sbjct: 906  KAANRAKSEFLANMSHEIRTPMNAVLGFTDLLQST---ITDPKATSYIKAIASSGRTLLA 962

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
            L+NDILDL+ ++AG ++L+Y  + +  ++NE++     K  E N+ ++V  D KL  S +
Sbjct: 963  LINDILDLSKIEAGKLQLHYEPVNIRTVINEIEHIFEQKASEKNLNLEVEVDPKLPYSIM 1022

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------DNGDFIFSVKNNGSSIPED 733
             D  RL QI   I+ N++ F+  GS  I  +          ++ D   ++ + G  I  +
Sbjct: 1023 TDEVRLRQILFNIVGNSIKFTEFGSVRITASCSQLKPNHPYNSIDLKIAITDTGIGISRE 1082

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F+ F  +  +  R+  G GLGL+I E  ++L GG + + S  +  +T    +P
Sbjct: 1083 DQHKIFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESERDQGSTFTVDLP 1140


>gi|190891008|ref|YP_001977550.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696287|gb|ACE90372.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 761

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 193/421 (45%), Gaps = 35/421 (8%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            VI +++ R   I +  ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N
Sbjct: 341 QVIRSNSGRMHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 400

Query: 461 PAFRSLWKTEENRLSPGTH--IRNIAAT---CSRYYNESDGWDLFAAIITSFDDER---- 511
             F+  +   ++ L PGT   I N AA      R   ++DG            DER    
Sbjct: 401 THFQQAYGLPDSVLVPGTERSIVNAAAARPVIERRIADADGSGYSRTTEVQLADERWLQI 460

Query: 512 ----------KSLQGTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                      S+   + L+         S+  L  +I  L  ++  L       S    
Sbjct: 461 NERRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANA 520

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
               EK  A   A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L S K  +Y  
Sbjct: 521 NYQAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSAKYDEYAR 579

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670
            I  S   LLN+++DILD++ ++AG +KL+   I L  L+ E  +  A    E NI I +
Sbjct: 580 DIHDSGKHLLNVISDILDMSKIEAGHLKLHRERIDLVPLIEESLRFTAIPAAEKNILIDQ 639

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            IS G   +  ADR+ + Q+   +LSNA+ F+  G  + ++  R +G    ++ + G  I
Sbjct: 640 RISSGL--TLTADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVTVTIADTGIGI 697

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      +   F  V + +   + G GLGL+I  S   LHGG + I S +   T I+ RI
Sbjct: 698 PRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRI 757

Query: 789 P 789
           P
Sbjct: 758 P 758


>gi|209966483|ref|YP_002299398.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum
           centenum SW]
 gi|209959949|gb|ACJ00586.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum
           centenum SW]
          Length = 883

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 132/242 (54%), Gaps = 3/242 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +R  R + E ++ L  ++E K+ F+ ++S+ELR+PL  IIGF+DL+ +   G+L  +   
Sbjct: 641 LRHLRHVKELSDQLAASNEAKSRFLANMSHELRTPLNAIIGFSDLMMSGMAGTLPPRIQD 700

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV+ I AS   LL +VND+LDL+ ++AG M+L+  ++    L  E    +  +     + 
Sbjct: 701 YVQSIHASGEHLLRMVNDVLDLSRIEAGRMELSPESLDAGILAAECVGMLLPRAVRGEVL 760

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNG 727
           ++V ++  L    AD  RL QI   I+ NA+ F+  G  V ++A A   G  +F+V++ G
Sbjct: 761 LEVQAESPL-PLTADALRLRQILLNIIGNAVKFTPPGGRVDVRARALAGGGAVFTVRDTG 819

Query: 728 SSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             +  +   +    F   A  R    G GLGL I +S ++LH G+++I ++    TT+  
Sbjct: 820 PGMTPEEVLTAMEPFRQVAQTRAAVEGTGLGLPIAKSLVDLHAGNLAIETAPGLGTTVTI 879

Query: 787 RI 788
            I
Sbjct: 880 EI 881


>gi|296133877|ref|YP_003641124.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296032455|gb|ADG83223.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 534

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 8/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R + E N  L KA+ +KN F+ + S+ELR+PLT II FT+LL   + G LN+ Q  Y+ 
Sbjct: 285 KRQMAEINLQLEKANRLKNEFLANTSHELRTPLTAIIAFTELLLDEETGPLNNMQRDYIN 344

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRI 669
            I+ SS  LLN +N++LDLA ++AG  +++   + ++DL + V  K     K+ +  + I
Sbjct: 345 EINESSQQLLNYINNLLDLAKIEAGKFEVHREAVSISDLCSSVLRKTEPIFKVKKQQVII 404

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNG 727
            V  +  +     D  +++Q+   +LSNA  F+ +   + L+A  ++     I SV +NG
Sbjct: 405 DV--EDNIPPVYVDPPKMMQVLINLLSNAHKFTPEDGRIELRARMNDRRDQVIVSVSDNG 462

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +  + +F +F  V+N      +G GLGL++V+  + +HGG V + S     +T  
Sbjct: 463 VGISSENLELIFEKFRQVNNRPEPLYQGTGLGLALVKHIVEMHGGQVKVESILGQGSTFY 522

Query: 786 CRIP 789
             IP
Sbjct: 523 FSIP 526


>gi|265750529|ref|ZP_06086592.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263237425|gb|EEZ22875.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 1045

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 135/238 (56%), Gaps = 6/238 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L T++      ++ +Y+ 
Sbjct: 669 ENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILATAEE---EQEKQEYIN 725

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +++T+LL L++DILDL+ ++AG +  +YS + LND+L+E++  +  +   + I++  
Sbjct: 726 IIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIA 785

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      ++ RL+Q+ + +L+NA  F+S+GS +         +  F VK+ G  IP
Sbjct: 786 HKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYELCGRELYFYVKDTGCGIP 844

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T    IP
Sbjct: 845 ADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|254503637|ref|ZP_05115788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222439708|gb|EEE46387.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 516

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 11/254 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNI 587
           L NA TML +    D + AE   A    +EA R+A+     K+ F+  +S+ELR+PL  I
Sbjct: 222 LKNANTMLEYRAEKDHLIAELETANAMSDEARRRAEAANVAKSRFLATMSHELRTPLNAI 281

Query: 588 IGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +GF++++K   LG + N     Y   I  S   LLNL+N+ILDL+ ++AG  +L   ++ 
Sbjct: 282 LGFSEIMKDEVLGPMKNDTYKSYSADIHGSGQHLLNLINEILDLSRIEAGRHELQEESLY 341

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L ++++E    +  + +  NI +    +  +    AD + L Q+   ++SNA+ F+  G 
Sbjct: 342 LEEVVDECGSMMTVRANAKNIMLHHTLEPDMPRVWADERALRQVVLNLISNAVKFTPVGG 401

Query: 707 TVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
            V +K  R  D+G ++ S+ + G  IPED   +V   F   +H  +    G GLGLSIV+
Sbjct: 402 EVHIKVGRTSDDGQYV-SITDTGPGIPEDEIPTVLEAFGQGSHAIKSAEPGTGLGLSIVQ 460

Query: 763 SFINLHGGHVSISS 776
           + + +H G   I S
Sbjct: 461 ALVGMHDGKFVIKS 474


>gi|237727241|ref|ZP_04557722.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229434097|gb|EEO44174.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 1045

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 135/238 (56%), Gaps = 6/238 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L T++      ++ +Y+ 
Sbjct: 669 ENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILATAEE---EQEKQEYIN 725

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +++T+LL L++DILDL+ ++AG +  +YS + LND+L+E++  +  +   + I++  
Sbjct: 726 IIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIA 785

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      ++ RL+Q+ + +L+NA  F+S+GS +         +  F VK+ G  IP
Sbjct: 786 HKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYELCGRELYFYVKDTGCGIP 844

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T    IP
Sbjct: 845 ADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 599

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 141/254 (55%), Gaps = 3/254 (1%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+E+S    P   T  T +++TD   AE A+ +      +A+  K+ F+ ++S+ELR+PL
Sbjct: 328 VVEWSRDGKPKRMTG-THIDITDRKMAENAIIQSKVLAEQANRTKSEFLANMSHELRTPL 386

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +IIG++ +L  +  G+L+ K+ +Y   I  S   LL L+N ILD++ V+AG M+     
Sbjct: 387 NSIIGYSQILNQNPSGNLDEKELKYSHNILNSGEHLLELINSILDISKVEAGKMEYEPER 446

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L + ++++   +     + +I I+ I++  +     DR +  QI   +LSNA+ F+ +
Sbjct: 447 VNLPETIDDIIGLVKPLAMKKSIDIRFINNSAIAKVWVDRVKFKQILHNLLSNAIKFTPE 506

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
              V +  + D+G    SV + G  IP +  + +F+ F  V+++   +  G GLGL++V+
Sbjct: 507 KGEVKIYLSTDDGTAQISVADTGIGIPAEKIEDIFDPFKQVNSSSSREYEGTGLGLALVK 566

Query: 763 SFINLHGGHVSISS 776
            ++ +H G + + S
Sbjct: 567 KYVEMHDGEIWVES 580


>gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
 gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
          Length = 1170

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L ++ + L++A   K+ F+ ++S+ELR+PL + +    LL  +  G+L+  Q Q+ 
Sbjct: 474 AQLMLEQRADELQRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPDGNLSDDQVQFA 533

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I ++   LL L+NDILD++ V+AG ++++    +L+ L++ +K     +  E  +   
Sbjct: 534 RSIYSAGNDLLTLINDILDISKVEAGKLEVHPELTILSRLVDGMKNLFLPQAMEKALSFS 593

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V ++D    +   DRQRL QI   +L+NA  F+ KGS  +    RD G   F+V++ G  
Sbjct: 594 VELADDLPPTLFTDRQRLEQILKNLLANAFKFTEKGSVTLRVEPRDGGMLAFAVRDTGIG 653

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +   ++F  F        RR  G GLGLSI     NL GG + + S+    +T    
Sbjct: 654 IAPEQQAAIFEAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLV 713

Query: 788 IP 789
           +P
Sbjct: 714 LP 715


>gi|297625139|ref|YP_003706573.1| histidine kinase [Truepera radiovictrix DSM 17093]
 gi|297166319|gb|ADI16030.1| histidine kinase [Truepera radiovictrix DSM 17093]
          Length = 379

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  L  KN  L +A+ ++  F+  +S+ELR+PLT++IG+  +L    +G LN KQ  Y
Sbjct: 122 RYQATLERKNSDLERANRVQREFLGILSHELRTPLTSVIGYAQVLGDEIIGPLNDKQRAY 181

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  S   L+ L++D+LDL+ ++AG + L    + + +LL      +  +     + +
Sbjct: 182 AETIYTSGLQLMRLIDDLLDLSRLEAGDVALQRRPVAVAELLRAGVAGVGAEARAKGLSV 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +    +  +   D  RL Q+   +LSNA+ F+  G  V + A     + +  V+++G  
Sbjct: 242 TLQPPPE-AALYGDPARLAQVLGALLSNAVKFTPLGGRVWVSAELRESEVVLMVRDDGIG 300

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I  +  + VF+ F  V  +   Q RG GLGL++    + LHGG + ++S
Sbjct: 301 IAPEHHEGVFSPFFLVDASSARQHRGAGLGLALARRIVELHGGRIWVAS 349


>gi|189465363|ref|ZP_03014148.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
 gi|189437637|gb|EDV06622.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
          Length = 580

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 9/240 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++TD    ER L    E   +++ IK++F+ ++S+E+R+PL  I+GF+ +L    
Sbjct: 323 LYTAWDITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAED- 381

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++++Y+  IS ++ ILL L+NDILDL+ ++AG ++  Y+ I +N +L+E++Q  
Sbjct: 382 --VSEEERTEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQ-- 437

Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           A +M + N  + + +   L   +   D++R+ Q+ +  +SNAM F++ GS         +
Sbjct: 438 AARMRQTNANVAICAVTPLEGLLLYTDQRRVTQVLNNFISNAMKFTNTGSITFGYEEPKD 497

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G   F V + G+ IP +    +FNRFV       ++G GLGL+I ++ +    G + ++S
Sbjct: 498 GYIRFFVTDTGTGIPPEKVADIFNRFVK--LDSFKQGTGLGLAISQNIVKELKGEIGVAS 555


>gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1524

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 173/353 (49%), Gaps = 18/353 (5%)

Query: 433  VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRLSPGTHIRNIAATCSRYY 491
            +K Q   I+  SEG+A+  P G     N A   L+  TE N L        +       Y
Sbjct: 1004 LKRQLTAIEAASEGIAITSPMGDYLYLNKAHLELFGYTEANEL--------LNRNWKSLY 1055

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTMLTFVNVTDS 548
            +  +G  +   +I    ++  S    L +  D    + E+S+    + + +    ++T+ 
Sbjct: 1056 HPEEGDRIDREVIAKLMEKGYSRGEALAIRKDGSTFLEEFSLTLTNSGEFVCVCRDITER 1115

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             RAE  L   N  L +A  +K+ F+ ++S+ELR+PL +I+G +++L+    G LN++Q +
Sbjct: 1116 KRAEVELRRTNAQLERATRLKDEFMANMSHELRTPLYSILGLSEVLQQEVYGVLNAEQLR 1175

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             +  I  S   LL L+N+ILDL+ +++G M+L  S + L  L       +  +  + NI+
Sbjct: 1176 SLSTIEQSGQHLLELINEILDLSKIESGKMELQLSAVNLTQLCQSSLNFVKPQADQKNIQ 1235

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNN 726
            ++ I+         D  R+ Q+   +LSNA+ F+ +G+ ++LK   +  N     SV + 
Sbjct: 1236 LQFIATPVPVIINIDELRIRQVLINLLSNAVKFTPEGNHILLKIETEPQNNCVHLSVTDT 1295

Query: 727  GSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  I PED  + +F  FV       RR  G GLGL++V     +H G VS+ S
Sbjct: 1296 GIGIAPEDQVR-LFEPFVQIDSSLSRRYSGTGLGLALVRQITQMHAGTVSLDS 1347


>gi|150007677|ref|YP_001302420.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256839938|ref|ZP_05545447.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149936101|gb|ABR42798.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256738868|gb|EEU52193.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 364

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 11/239 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ E+     K++ +K+SF+ ++S+E+R PL  I+GF+ LL   + G L   + +Y+  
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++ +LL +VND+LDLA +++G M  ++    L  L+ E   S   K+      + + 
Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRG---VALT 240

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
               L SF+  +DR RL Q+    ++NA+ ++S GS ++   A +N + + SV + G  +
Sbjct: 241 YPASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAMEN-EVLLSVTDTGEGM 299

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            E++   VF+RF     R Q++G+GLGLSI ++ I   GG + +SS     +   C +P
Sbjct: 300 SEEIKLHVFDRFYKG--RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|298483182|ref|ZP_07001362.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270699|gb|EFI12280.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 579

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 130/235 (55%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  +    L 
Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV  + + K  
Sbjct: 384 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 441

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           ++ + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +  +  D     F V
Sbjct: 442 DSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCV 501

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  IP++    +FNRFV      Q  G GLGLSI +S +   GG + + S +
Sbjct: 502 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVKRMGGKIGVESRE 554


>gi|2951933|gb|AAC06271.1| hybrid histidine kinase homolog [Pseudomonas fluorescens]
          Length = 983

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 141/281 (50%), Gaps = 18/281 (6%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572
           V +YS+ PL +    + F+     N+T   + E+ +  KN       E +RK DE K+ F
Sbjct: 129 VTDYSLTPLRDNHGEVAFLLAEGRNITSKKKYEQEIARKNSELEKLVEQIRKLDEQKSRF 188

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
             ++S+ELR+PL+ I+G  D +  S     + +    +  I  ++  LL  VN++LDLA 
Sbjct: 189 FSNLSHELRTPLSLILGPVDEMLVSS--EFSERHDTNLASIRRNAVTLLRHVNELLDLAK 246

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           VDAG ++L Y  I +  L+ ++         +  IR  V+S G +    AD +R+  +  
Sbjct: 247 VDAGKLQLAYERIDIKGLVEDIAAHFEAHAKQRRIRCAVLSPGPI-LVEADPERIGHVVF 305

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRG 749
            +++NA + +  G  +  +     G+  + +V ++G  IP +M + +F RF      H  
Sbjct: 306 NLMANAFNATPDGGRISCRVEIGRGNRCLLTVSDSGPGIPPEMRQRIFERFQQGLEDHGQ 365

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            R G GLGL+IV+ FI LHGG V++  +          IP+
Sbjct: 366 ARAGSGLGLAIVKEFIELHGGTVTVGEAPGSGAIFQVEIPA 406



 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           DNGD    V++NG  +P    + +F  F +     + +G+G+GL+I  + +  HGG +++
Sbjct: 901 DNGDLQLEVEDNGCGVPALQAERIFEPFYTT----KSQGMGMGLAICRTILEAHGGQLNL 956


>gi|114569450|ref|YP_756130.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339912|gb|ABI65192.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 562

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 134/244 (54%), Gaps = 7/244 (2%)

Query: 552 ERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           + ALT+       A+E    K+ F+  VS+ELR+PL  IIGF+D++K    G L ++ ++
Sbjct: 281 QAALTQARHDREAAEEDARAKSQFLASVSHELRTPLNAIIGFSDVMKARLFGPLPARYAE 340

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  S   L+ L+ D+LD++ ++A   +L   T  + +++N   + +  +  E  I 
Sbjct: 341 YADLIHESGQHLMELIGDVLDMSKIEADRYELVRETFDIGEVVNLSAKMMRLQAEEAGIN 400

Query: 669 IKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +K+   DG L     DR+ L QI   +LSNA+ F+ KG  +++ A    G  + +V ++G
Sbjct: 401 LKIKRHDGPL-LVDGDRKALRQILLNLLSNAVKFTPKGGAIVVMARASGGQLVMAVGDSG 459

Query: 728 SSI-PEDMCK-SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I PE+  +     +  +NA   ++RG GLGLS+V +   LHGG ++I+S     TT+ 
Sbjct: 460 VGIDPEETARLGQPYQQAANARDIEKRGTGLGLSLVRALSELHGGSMNIASRKGEGTTVT 519

Query: 786 CRIP 789
             +P
Sbjct: 520 ISLP 523


>gi|330821703|ref|YP_004350565.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327373698|gb|AEA65053.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1172

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 134/247 (54%), Gaps = 9/247 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V A+++L+     L +    K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q  
Sbjct: 465 VSAQQSLSANAARLEQTSRYKSEFLANMSHELRTPLNSSLILARLLQENRGGNLTDEQVH 524

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I +S++ LLNL+NDILDL+ V+AG + +   T+VL+ ++  +++  +       + 
Sbjct: 525 YAQTIHSSNSDLLNLINDILDLSKVEAGHIVMEPETVVLDTVMRSMREMFSPIAEGKALT 584

Query: 669 IKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           + +  + G  G+ V D QRL+QI   +LSNA+ F+ +G   +  +    G+  F V+++G
Sbjct: 585 LTITRAPGTPGTIVTDHQRLVQILRNLLSNALKFTERGEVALGISVDGAGEIRFEVRDSG 644

Query: 728 SSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             I  D  + +F  F      ++ H G   G GLGLSI   F  L GG + + S     +
Sbjct: 645 IGIAADKLEMIFEAFQQADGSTSRHYG---GSGLGLSISRKFAELLGGRIDVVSEPGAGS 701

Query: 783 TINCRIP 789
               R+P
Sbjct: 702 VFTLRLP 708


>gi|320160588|ref|YP_004173812.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994441|dbj|BAJ63212.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1660

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 6/241 (2%)

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            ++ RA     +  E +R+ D +K+ F+ ++S+ELR+PL +IIGF+ ++     G +N  Q
Sbjct: 1143 ENARAYELAQKAVEEMREVDRVKSQFLANMSHELRTPLNSIIGFSRVILRGIDGPINDTQ 1202

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Q +  I  S   LLNL+NDILDL+ ++AG M+L++S + + DL+N    +    + +  
Sbjct: 1203 KQDLTAIYNSGQHLLNLINDILDLSKIEAGKMELSFSDVNMTDLINSAMSTAVGLVKDKP 1262

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
            I++    +  L    AD  R+ Q+    LSNA  F+ +GS  +    +++     + + +
Sbjct: 1263 IKLITEIEDNLPIVRADATRVRQVLINFLSNAAKFTDEGSITVRARRVRSPEGKPELMVT 1322

Query: 723  VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  I E+    +F  F  V ++   +  G GLGLSI  S I +HGG + +  S  G
Sbjct: 1323 VTDTGPGIAEEDRSKLFLPFSQVDDSPTRKTGGTGLGLSICRSLIEMHGGRIGLLESTVG 1382

Query: 781  V 781
            V
Sbjct: 1383 V 1383


>gi|298375623|ref|ZP_06985580.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268123|gb|EFI09779.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 364

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 11/239 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ E+     K++ +K+SF+ ++S+E+R PL  I+GF+ LL   + G L   + +Y+  
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++ +LL +VND+LDLA +++G M  ++    L  L+ E   S   K+      + + 
Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRG---VALT 240

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
               L SF+  +DR RL Q+    ++NA+ ++S GS ++   A +N + + SV + G  +
Sbjct: 241 YPASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAMEN-EVLLSVTDTGEGM 299

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            E++   VF+RF     R Q++G+GLGLSI ++ I   GG + +SS     +   C +P
Sbjct: 300 SEEIKLHVFDRFYKG--RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|330895745|gb|EGH28034.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 289

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L+   +G + 
Sbjct: 4   DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 63

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+     +  +  
Sbjct: 64  DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 123

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
             +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L        +A   
Sbjct: 124 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 183

Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
           +GD+                  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 184 DGDWPTYGFTLPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 242

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 243 GLAMVKQLTELHGGCVAVAS 262


>gi|168705275|ref|ZP_02737552.1| sensory transduction histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 551

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 4/249 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + D  R    L   N AL +++ +K+ F+  +S+ELR PL +IIGF+++L  ++  +L  
Sbjct: 280 IADLDRKVDELARVNMALFESNRLKSEFLSTMSHELRDPLNSIIGFSEVLIAAE--NLTE 337

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ +Y   I  S   L  L+NDIL+LA ++AG M+L+                I  +  +
Sbjct: 338 KQQRYAGNIMTSGQRLTALINDILELAKLEAGKMRLHPEPFNAAAACEHAAAQIRPQAEK 397

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            NI ++V +D    +   D  ++ QI + +LSNA+ F+ +G  V LKAA D  D + +V 
Sbjct: 398 KNIDVRVAADPHAPATRQDAGKVHQIITNLLSNAVKFTPEGGRVTLKAATDGTDLVLTVT 457

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  +    +F +F   +N    ++ G GLGLSIV     L GG V++ S     +
Sbjct: 458 DTGVGIAPEEQDLIFEKFRQAANPMTREQGGTGLGLSIVRELAKLLGGDVTVHSELGRGS 517

Query: 783 TINCRIPSK 791
           T   RI ++
Sbjct: 518 TFTVRIAAR 526


>gi|332666984|ref|YP_004449772.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
 gi|332335798|gb|AEE52899.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
          Length = 1316

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 140/270 (51%), Gaps = 29/270 (10%)

Query: 539  MLTFVNVTDS------------------VRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            +LT V++TD+                  + A+R   +K +   +A + K  F+ ++S+E+
Sbjct: 891  VLTMVDITDARKLALELQKKEKQVLDELMEAKRIAEQKTKIAEEAVKAKQQFLSNMSHEI 950

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+P+  IIGFT+++  +KL   N  Q +Y+  I  S   L+ L+NDILDLA V+AG M  
Sbjct: 951  RTPMNAIIGFTNVVMKTKL---NEAQKEYINAIKVSGESLIILINDILDLAKVEAGKMVF 1007

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             +S   L   ++++     TKM E N + IK          V D  RL QI   ++SNA+
Sbjct: 1008 EHSPFRLFSSVSDMLHLFETKMQEKNLVLIKQYDTNVPEILVGDPVRLRQIMLNLISNAV 1067

Query: 700  DFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
             F++ G   +    LK  +D+    FSV + G  IPE+  K +F+ F   A    R   G
Sbjct: 1068 KFTNAGKITVRVDLLKEDQDHVSVEFSVSDTGIGIPENNLKQIFDAFEQIAPETTRLNGG 1127

Query: 754  VGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             GLGL+IV+  + L GG+V + S  D+G T
Sbjct: 1128 TGLGLAIVKQMVKLQGGNVKVKSKVDKGST 1157


>gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis
           HTCC2601]
 gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp.
           HTCC2601]
          Length = 855

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 224/485 (46%), Gaps = 39/485 (8%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
           ++ L  +    A+++ +  L+  N +F+  +E D+  +    S   +LE L     +  Q
Sbjct: 82  WKALQTMRDGFAMYNSDALLELANPAFLAPFE-DIDSVGPGASYRHVLEMLVEEGIVDLQ 140

Query: 369 LNWKT-WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
              +  W   +   ++ S    +T  L  GQ + +     P GG + +  ++T       
Sbjct: 141 GERRRHWLSRMQERWEMSPIPPETIRLWTGQFIKIQDRRMPDGGVVSLCVDIT------- 193

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
               L+++    I+ L +G  ++  + R+ + N  +R+L+      + PG    +I    
Sbjct: 194 ---ELMRMWS-AIEELPDGFVIYDAEDRLLMCNAPYRNLYSDSAPAIIPGASFEDIL--- 246

Query: 488 SRYYNESDGWDLFAAIITSFDD--------ERKSLQGTLELLSDSV-LEYSIIPLPNAQT 538
              Y  S G   +A  +   +D         R++ Q   + L D   L      L +   
Sbjct: 247 --RYGLSQGQ--YAEALGREEDWLEERLSAHRRAEQEMEQQLRDGRWLRIYERALSDGGR 302

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +++T++ R ++ L E      +A   K++F+ ++S+E+R+P+  ++G  +LL+ S 
Sbjct: 303 VGLRIDITEAKRIQQELVEAKRRAEEASHAKSAFLANMSHEIRTPMNGVVGMAELLRES- 361

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+ +Q+ YV+ I  S   LL ++NDILD + ++A  ++L      L   ++EV   +
Sbjct: 362 --ALSDEQALYVDTIRNSGEALLVIINDILDYSKIEAERLQLKPEPFDLERTVHEVLLML 419

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--D 715
                E  + + V  D  L + FV D  R+ QIF+ ++ NA+ F+++G  +I    R  +
Sbjct: 420 QPTAREKGLELLVDYDMFLPTRFVGDPGRVRQIFTNLVGNAVKFTNEGHVLIRITGRCVE 479

Query: 716 NGDFIF--SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            G+     +V++ G  IP D  + +F  F  V +    Q  G GLGL+I +   +L GG 
Sbjct: 480 EGEAAVHATVEDTGIGIPPDKIEHIFGEFNQVEDDRNRQFEGTGLGLAITKRLTDLMGGE 539

Query: 772 VSISS 776
           + + S
Sbjct: 540 IWVES 544


>gi|294777096|ref|ZP_06742553.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|319643455|ref|ZP_07998078.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|294448965|gb|EFG17508.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|317384860|gb|EFV65816.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1045

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 140/246 (56%), Gaps = 8/246 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L  +       
Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAA---EEEQ 718

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +Y+  I +++T+LL L++DILDL+ ++AG ++  YS + LND+++E++     +   
Sbjct: 719 EKQEYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTES 778

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           N I++ ++  G     +  ++ RL+Q+ + +L+NA  F+S+GS        D  +  F V
Sbjct: 779 NGIQL-IVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDK-ELYFYV 836

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           K+ G  IP D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T
Sbjct: 837 KDTGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGST 894

Query: 784 INCRIP 789
               IP
Sbjct: 895 FWFTIP 900


>gi|237710942|ref|ZP_04541423.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454786|gb|EEO60507.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 1029

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 135/238 (56%), Gaps = 6/238 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L T++      ++ +Y+ 
Sbjct: 653 ENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILATAEE---EQEKQEYIN 709

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +++T+LL L++DILDL+ ++AG +  +YS + LND+L+E++  +  +   + +++  
Sbjct: 710 IIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGVQLIA 769

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      ++ RL+Q+ + +L+NA  F+S+GS +         +  F VK+ G  IP
Sbjct: 770 HKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYELCGRELYFYVKDTGCGIP 828

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T    IP
Sbjct: 829 ADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 884


>gi|254883730|ref|ZP_05256440.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254836523|gb|EET16832.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 1045

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 140/246 (56%), Gaps = 8/246 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L  +       
Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAA---EEEQ 718

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +Y+  I +++T+LL L++DILDL+ ++AG ++  YS + LND+++E++     +   
Sbjct: 719 EKQEYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTES 778

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           N I++ ++  G     +  ++ RL+Q+ + +L+NA  F+S+GS        D  +  F V
Sbjct: 779 NGIQL-IVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDK-ELYFYV 836

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           K+ G  IP D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T
Sbjct: 837 KDTGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGST 894

Query: 784 INCRIP 789
               IP
Sbjct: 895 FWFTIP 900


>gi|150005262|ref|YP_001300006.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           vulgatus ATCC 8482]
 gi|149933686|gb|ABR40384.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Bacteroides vulgatus ATCC
           8482]
          Length = 1045

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 140/246 (56%), Gaps = 8/246 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L  +       
Sbjct: 662 ITERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAA---EEEQ 718

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +Y+  I +++T+LL L++DILDL+ ++AG ++ +Y  I LND+++E++     +   
Sbjct: 719 EKQEYINIIESNNTLLLQLISDILDLSKIEAGTLEFSYCNIELNDIISEIESVTRYRTES 778

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           N I++ ++  G     +  ++ RL+Q+ + +L+NA  F+S+GS        D  +  F V
Sbjct: 779 NGIQL-IVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDK-ELYFYV 836

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           K+ G  IP D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T
Sbjct: 837 KDTGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGST 894

Query: 784 INCRIP 789
               IP
Sbjct: 895 FWFTIP 900


>gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
 gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
          Length = 1137

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 127/230 (55%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+ AL  K   L +A + K+ F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y 
Sbjct: 442 AQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQQNLTAEQVRYA 501

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  + T LLNL+NDILDLA ++AG   +    + +  ++  V + +  +  +  ++  
Sbjct: 502 QTIHNAGTDLLNLINDILDLAKIEAGQTSVEIGPVTVAKVVAGVMEPLRAQAQDKGLQFN 561

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + +  + +F+ +D QRL QI   +LSNA+ F+++G   +   A DN    F+V++ G  
Sbjct: 562 AVVEPGVPAFITSDAQRLAQILKNLLSNALKFTARGEVTMRVFAGDNDTLCFAVRDTGIG 621

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I  D+ + +F+ F        R+  G GLGLSI      L GG +++ S+
Sbjct: 622 IAPDLQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAVQSA 671


>gi|325279566|ref|YP_004252108.1| GAF sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311375|gb|ADY31928.1| GAF sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
          Length = 945

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 139/256 (54%), Gaps = 8/256 (3%)

Query: 537 QTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           Q  L F+  ++ +  + E  L +      ++D +K++F+ ++S+E+R+PL  I+GF++LL
Sbjct: 693 QVELVFLSADIDNLKKIEANLIQAKAKAEESDRLKSAFIANMSHEIRTPLNAIVGFSNLL 752

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S++      +++Y   IS ++ +LL L+NDILD++ ++AG+M    +T+ LN    E+
Sbjct: 753 -ASEMDFSEEDKAEYTRIISVNNDLLLQLINDILDISKIEAGVMDFTENTVELNQFFQEI 811

Query: 655 KQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +     K  +  I IK I +  +  +   DR RL Q+ S  L+NA+ F+ +G        
Sbjct: 812 ESVFQLKA-KTGIEIKFIPEQAEEYAIKIDRIRLNQVISNFLNNALKFTRQGHIFFGYRL 870

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R+  D  F V++ G  IP+D   SVF RFV   +  Q  G GLGLSI  + I+   G + 
Sbjct: 871 REK-DIYFYVEDTGIGIPKDQQASVFRRFVKLNNFIQ--GTGLGLSICSTIIDKFNGKIG 927

Query: 774 ISSSDEGVTTINCRIP 789
           + S  E  +T    IP
Sbjct: 928 VESEPEKGSTFWFTIP 943


>gi|218128652|ref|ZP_03457456.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
 gi|217989107|gb|EEC55422.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
          Length = 983

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 131/232 (56%), Gaps = 6/232 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +TD  R E+ L        ++D +K++F+ ++S+E+R+PL  I+GF+ +L T+       
Sbjct: 599 ITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILATA---EEEE 655

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++S+Y+  I  ++ +LL L++D+LD+A ++A  +  NYS++ LN L+NE++ +   ++  
Sbjct: 656 EKSEYINIIENNNQLLLQLISDVLDIAKIEASSLDFNYSSLDLNVLMNELESTALMRITS 715

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            ++ +++I D      + +R RL QI   +L+NA+ F+ KG  +            F V 
Sbjct: 716 PDVCLEMIPDSDNCWVITERNRLSQIIINLLNNAIKFTQKGK-ITFGYKLQKEKIYFYVT 774

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  IP +    +F RF+   +  Q  G GLGLSI +S ++  GG + + S
Sbjct: 775 DTGCGIPAEKQDKIFERFIKLNNFAQ--GTGLGLSICKSIVDAMGGEIGVDS 824


>gi|160891489|ref|ZP_02072492.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|317478405|ref|ZP_07937568.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156858896|gb|EDO52327.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|316905441|gb|EFV27232.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 388

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 144/253 (56%), Gaps = 8/253 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T  ++T   + E  L    E    AD  K+ F+ ++S+E+R+PL  I+GF++LL ++ 
Sbjct: 126 VITVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLASA- 184

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S + +++Q++E + +++ +L  L+ DILDL+ ++AG ++  +S + +N ++ +++Q  
Sbjct: 185 --STDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMFDLEQQF 242

Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             ++ E    ++++ +     +    DR RL Q+ S  ++NA+ F+ +GS  +     + 
Sbjct: 243 RMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQEGSITLGFRPYEE 302

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G + F VK+ G+ IP++    VF RFV    + ++ G GLGLSI ++ +   GG + + S
Sbjct: 303 GLY-FYVKDTGTGIPQEKLPHVFERFVK--LKQEKNGTGLGLSICQTIVRKLGGEIGVES 359

Query: 777 SDEGVTTINCRIP 789
            +   +T    +P
Sbjct: 360 EEGAGSTFWFTLP 372


>gi|255013618|ref|ZP_05285744.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 364

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 134/239 (56%), Gaps = 11/239 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ E+     K++ +K+SF+ ++S+E+R PL  I+GF+ LL   + G L   + +Y+  
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++ +LL +VND+LDLA +++G M  ++    L  L+ E   S   K+      + + 
Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRG---VALT 240

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
               L SF+  +DR RL Q+    ++NA+ ++S GS ++   A +N + + SV + G  +
Sbjct: 241 YPASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAMEN-EVLLSVTDTGEGM 299

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            E++   VF+RF     R Q++G+GLGLSI ++ +   GG + +SS     +   C +P
Sbjct: 300 SEEIKLHVFDRFYKG--RNQKQGIGLGLSICQNIVERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|237718051|ref|ZP_04548532.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229452692|gb|EEO58483.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 538

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 129/235 (54%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  +    L 
Sbjct: 293 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 351

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV  + + K  
Sbjct: 352 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 409

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           ++ + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +     D     F V
Sbjct: 410 DSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLEDESQVRFCV 469

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  IP++    +FNRFV      Q  G GLGLSI +S +   GG + + S +
Sbjct: 470 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVKRMGGKIGVESRE 522


>gi|229590584|ref|YP_002872703.1| putative two-component system sensory histidine kinase [Pseudomonas
           fluorescens SBW25]
 gi|229362450|emb|CAY49356.1| putative two-component system, sensory histidine kinase
           [Pseudomonas fluorescens SBW25]
          Length = 464

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 132/253 (52%), Gaps = 26/253 (10%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERAL EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G ++  Q +Y+ 
Sbjct: 189 ERALEEKNLELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGLVGEMSDTQREYIG 248

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL+L+NDILDL+ V+AG+M+L    + L  LL      +  K   + I++K+
Sbjct: 249 DIFTSGQHLLSLINDILDLSKVEAGMMELELEAVELAGLLANSLLIVREKAALHRIQLKL 308

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI-------- 720
            S   LG    D ++  QI   +L+NA+ FS  GS+V L   +  R+    I        
Sbjct: 309 ESPEDLGCLALDLRKTKQIVYNLLANAVKFSEHGSSVTLTVRQVPREQVGQIPGEWPVYN 368

Query: 721 -------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
                         SV + G  I ED    +F  F  + ++   +  G GLGL++V+   
Sbjct: 369 FALPDSPHQQFLELSVSDTGIGIAEDDMGKLFKAFSQIDSSLARKFEGTGLGLAMVKQLT 428

Query: 766 NLHGGHVSISSSD 778
           +LHGG V+++S +
Sbjct: 429 DLHGGSVAVASRE 441


>gi|328544444|ref|YP_004304553.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326414186|gb|ADZ71249.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 517

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 147/286 (51%), Gaps = 18/286 (6%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEI---K 569
           QG   +L + +L  +I       TML +    D + AE  +A    +E+ R+A+E    K
Sbjct: 211 QGFFLVLGNQLLNSAI-------TMLAYRAEKDHLIAELEQANAVSDESRRRAEEANLAK 263

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDIL 628
           + F+  +S+ELR+PL  I+GF++++K   LG + N     Y   I  S   LLNL+N+IL
Sbjct: 264 SRFLATMSHELRTPLNAILGFSEIMKDEVLGPMANPTYRSYAADIHGSGQHLLNLINEIL 323

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ ++AG  +LN   + L D++ + +  +  +    +I I+   +  L    AD + + 
Sbjct: 324 DLSRIEAGRYELNEEAVTLIDIVEDCRTMMQIRAKAKDITIRESHEDGLPRLWADERAIR 383

Query: 689 QIFSKILSNAMDF--SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN- 745
           Q+   +LSNA+ F  SS   T+ + AA   G F+ S+++NG  IPED    V   F    
Sbjct: 384 QVILNLLSNAVKFTPSSGEVTIRIGAAPGGGQFV-SIRDNGPGIPEDEIPIVLQAFGQGA 442

Query: 746 -AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            A +    G GLGLSIV++ +  HGG   + S     T     +PS
Sbjct: 443 IAIKSAEAGTGLGLSIVQALVAQHGGTFELKSRLREGTEAIVTLPS 488


>gi|237713394|ref|ZP_04543875.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406767|ref|ZP_06083316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646034|ref|ZP_06723699.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810538|ref|ZP_06769191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446633|gb|EEO52424.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262355470|gb|EEZ04561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638605|gb|EFF56958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442302|gb|EFG11116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 512

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 129/235 (54%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  +    L 
Sbjct: 267 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 325

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV  + + K  
Sbjct: 326 --RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKR 383

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           ++ + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +     D     F V
Sbjct: 384 DSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLEDESQVRFCV 443

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  IP++    +FNRFV      Q  G GLGLSI +S +   GG + + S +
Sbjct: 444 TDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVKRMGGKIGVESRE 496


>gi|148254533|ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146406706|gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding
           domain (C-term) [Bradyrhizobium sp. BTAi1]
          Length = 774

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 185/405 (45%), Gaps = 49/405 (12%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT- 478
           TV+ DL  +         + I+ +SE   ++  + R+ L N  F+ L K  ++ + PGT 
Sbjct: 370 TVEADLRLR---------DAIETISEAFVLWDANNRLVLCNSHFQKLHKLPDSAVIPGTS 420

Query: 479 --------HIRNIAATCSRYYNESDGWDLFAAIITSFDD-------ERKSLQGTLELLS- 522
                    +  I      +  +S G   F A     DD       ER++  G    +  
Sbjct: 421 YETVIEVGKMPEIRTRLHDHSQQSPGARTFEA---QLDDGSWLHISERRTKDGGYVSVGT 477

Query: 523 ---------------DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                          D  L  ++I L  +Q+ L    +  +  AE+   EK  A  +A++
Sbjct: 478 DITRIKEHEQKLVDNDLRLRATVIDLQRSQSALERQAIELADLAEKYSQEKTRA-EEANQ 536

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVND 626
            K+ F+ ++S+ELR+PL  IIGF++++ +   GSL S++ Q Y   I  S   LL ++ND
Sbjct: 537 TKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVIND 596

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ ++AG MKL+   + L   L E  + ++ +  +  + +    +G +   VADR+ 
Sbjct: 597 ILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKRLVLDADIEGNI-PIVADRRA 655

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
             QI   +LSNA+ F+ +G  V +++   +   +  + + G  IP      +   F  V 
Sbjct: 656 TKQIMVNLLSNAVKFTPEGGRVTMRSRVFDDKVVLIIADTGIGIPAQSLARLGRPFEQVE 715

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +       G GLGL+I  S   LHGG + + S  E  T +   +P
Sbjct: 716 SQMTKTYHGSGLGLAIARSLTQLHGGSMRLRSRIESGTVVRVTLP 760


>gi|126730008|ref|ZP_01745820.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126709388|gb|EBA08442.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 841

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 128/519 (24%), Positives = 233/519 (44%), Gaps = 57/519 (10%)

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
           RV+   G+A   I+V     V +QL    E + +     A+FD+ R L+  N +++ ++E
Sbjct: 62  RVVQELGQATEKIEV-----VTEQLWSAMETIRD---GFAMFDEERRLELANPAYLSVFE 113

Query: 341 IDLAFLATN-PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
             L  +A   P  D L  F        +  + K W+  + + ++       T  L NG+ 
Sbjct: 114 -GLDHIAPGVPYPDILATFAEEGLIDLQGEDPKGWQLRMLARWEQDPIPNTTLRLWNGRF 172

Query: 400 LHVIVTSNPRGGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           + V     P GG +    +LTV + DL   ++         ++ L +G  ++  + R+ +
Sbjct: 173 VKVRERHLPDGGIV----SLTVDITDLMRMWSA--------VEELPDGFVIYDAEDRLLM 220

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRY------YNESDGWDLFAAIITSFDDERK 512
            N  +R  +K     + PGT   +I     RY      Y E+ G +        + ++R 
Sbjct: 221 CNQPYRDYYKASAPAMVPGTTFEDIL----RYGLKNGQYAEAVGRE------EEWLEDRL 270

Query: 513 SLQGTLELLSDSVLE-------YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           +     EL  +  L+       Y        +  L  V++T     ++ L E       A
Sbjct: 271 TKHRFAELEHEQQLDDGRWLRIYERETTDGGRVGLR-VDITQIKEDQQRLKEATIRAEAA 329

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K++F+ ++S+E+R+P+  ++G  DLL+ ++   LN +Q  Y + I +S   LL ++N
Sbjct: 330 NRAKSAFLANMSHEIRTPMNGVVGMADLLRETE---LNDEQKLYADTIRSSGEALLVIIN 386

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           DILD + ++A  + LN     L   +++V   +     + +I + V  D  L + FV D 
Sbjct: 387 DILDYSKIEAEKLVLNPEPFDLERAIHDVVMLLQPTARDKDITLLVDYDMFLPTHFVGDP 446

Query: 685 QRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFN 740
            R+ QI + ++ NA+ F+ +G  +  ++    D G      +V++ G  IP D  + VF 
Sbjct: 447 GRVRQILTNLVGNAVKFTVQGYVLVRVVGVMEDGGSTAVHITVEDTGIGIPADKVEHVFG 506

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F  V +    +  G GLGL+I    + L GG V + S 
Sbjct: 507 EFNQVEDERNRKFEGTGLGLAITRRLVELMGGEVWVESE 545


>gi|253570643|ref|ZP_04848051.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251839592|gb|EES67675.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 720

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 136/243 (55%), Gaps = 4/243 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T + VT     E AL +      +A+ +K+SF+ ++S+E+R+PL  I+GF+ LL +++ G
Sbjct: 467 TSMTVTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERG 526

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               KQ +Y+  I  ++T+LL L++D+LDL+ ++AG M+ +Y+ + ++ L  E++ +   
Sbjct: 527 ISEEKQ-EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRL 585

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +  ++ I I            ADR RL+Q+   +++NA+ F+ +GS       R++G   
Sbjct: 586 RNKKSGICICYHRRTTECGVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLH 645

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDE 779
           F V + G  IPE+  + +F  FV      Q  G GLGL+I  + +   GG + ++S   +
Sbjct: 646 FYVTDTGCGIPEERLEEIFGNFVKLNSFVQ--GTGLGLTICRAIVERMGGKIGAVSRLGQ 703

Query: 780 GVT 782
           G T
Sbjct: 704 GST 706


>gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
 gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
          Length = 1043

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 118/218 (54%), Gaps = 4/218 (1%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            R+ D +KN F+  VS+ELR+PLT+I G   LL    L     K  + ++    ++  L+ 
Sbjct: 791  REVDRMKNEFISVVSHELRTPLTSIRGSLGLLAGGALRKDPEKADRMLDIALKNTERLVR 850

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            L+NDILD+  +++G + LN   +   DL+++   ++      N +R++  S    G   A
Sbjct: 851  LINDILDIEKIESGNIALNVQPLDAADLISQASATMHAMADANKVRLETHS--TRGILYA 908

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            DR R+LQ  + +LSNA+ FS   +TV + + R  G  +  V++ G  IP +  +++F RF
Sbjct: 909  DRDRMLQTLTNLLSNAIKFSKPDNTVTISSQRRGGGLLIRVRDQGRGIPSNKLQTIFERF 968

Query: 743  --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              V  +    + G GLGL+I  S +  HGG + + S D
Sbjct: 969  QQVDASDSRDKGGTGLGLAICRSIVQQHGGSIWVDSID 1006


>gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
 gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
          Length = 1108

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 140/249 (56%), Gaps = 7/249 (2%)

Query: 550  RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            R E  + + NE   +A+   + K+ F+ ++S+ELR+PL +IIGF+D+L     G L  KQ
Sbjct: 842  RLEDTVLKANELAAQAEYANKSKSEFLANMSHELRTPLNSIIGFSDILNGETFGKLTQKQ 901

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +Y   I+ S   LL L+N+ILDL+ ++AG M+       LN + ++++  I+ +  + +
Sbjct: 902  EKYTANINKSGKHLLYLINEILDLSKIEAGKMEFVCDDFKLNSVFSDIESIISLQAQKKS 961

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725
            I +++     +    AD+ ++ QI   +LSNA+ F+ +   V + A + + D +  +VK+
Sbjct: 962  IDLEISKSVDI-EINADKSKIKQIIFNLLSNAIKFTDENGRVSMSARKVDRDRVEIAVKD 1020

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  IPED  +++F+ F+       R+  G GLGL++V+ ++  HGG V + S     +T
Sbjct: 1021 TGIGIPEDKFETIFDPFMQVDASTSRKYGGTGLGLALVKKYVEKHGGEVWVESEIGKGST 1080

Query: 784  INCRIPSKE 792
                IP K+
Sbjct: 1081 FMFTIPLKQ 1089


>gi|330962181|gb|EGH62441.1| two-component sensor/regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 576

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 135/260 (51%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  IIGF++ LK   +G ++
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAIIGFSEALKDGMVGDMS 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+     +  +  
Sbjct: 351 DAQRGYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
              I++K+ +D   G    DR++  QI   +L+NA+ FS+ G  V L        +A   
Sbjct: 411 LQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSAPGGWVTLSVRQVPSAQAGVL 470

Query: 716 NGDF---IF-------------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
            GD+   +F             SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 EGDWPTHVFPVPPGDYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLAELHGGSVAVAS 549


>gi|294675599|ref|YP_003576214.1| PAS/PAC sensor domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294474419|gb|ADE83807.1| PAS/PAC sensor domain protein [Rhodobacter capsulatus SB 1003]
          Length = 535

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 172/376 (45%), Gaps = 31/376 (8%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L  + L + + + ++  D    L+W  D+ G I WAN +Y   +       +  +    +
Sbjct: 150 LSQRALEDELDLMRLTLDRAPTLIWREDETGTITWANRAYVLRSGAFAETEEAMLWPLPR 209

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAGIAIDV 295
           LF+ +   R      L          L+ G+ +       S+ + +    F     +  V
Sbjct: 210 LFQMDENARHTGPRRLR---------LDDGDQRAAWFDCHSFPMDKGALHFALPADST-V 259

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E  + D +    +   +L + +AIFD+ R LQ  N + ++L ++   FL+  P+    
Sbjct: 260 RAEKALRDFVQTLTKTFADLPIGLAIFDRARQLQLFNPALIDLTQLGTDFLSNRPTLYAF 319

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTI 413
           L+ LR A  +PE  ++++W+  +  + +++    H +TW LP+GQT  V    +P G   
Sbjct: 320 LDRLREARMMPEPKDYRSWRLKMTELEQAAAAGFHSETWMLPSGQTYRVTGRPHPDGAVA 379

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           ++FE+++ +V L  ++   ++   E +D +SE VAVF P G +  SN A+  LW  E + 
Sbjct: 380 FLFEDISSEVSLTRRFRAELEQGQEILDMMSEAVAVFQPSGELTASNAAYDRLWGVETD- 438

Query: 474 LSPGTHIRN--IAATCSRYYNESDGWDLFAAIITSFDD---ERKSLQGTLELLSDSVL-E 527
               T +R   I      +  + DG DL+ ++   F++   +R  ++GT+    D ++  
Sbjct: 439 ----TSLRRTTILDAVRLWQGKCDGSDLW-SLARGFNNRLGQRSLIEGTVRRREDGMMIG 493

Query: 528 YSIIPLPNAQTMLTFV 543
               P+     M +F+
Sbjct: 494 CRFAPMTGGAMMASFL 509


>gi|163846813|ref|YP_001634857.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524634|ref|YP_002569105.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163668102|gb|ABY34468.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448513|gb|ACM52779.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 537

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 152/289 (52%), Gaps = 7/289 (2%)

Query: 494 SDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV-RA 551
            DG  L+  ++T    D+   + G +++++D+  + S+I    +Q       + D + R 
Sbjct: 81  PDGSTLYIDLLTIPLTDKDGRITGLIQIVTDTT-QRSVIEQLRSQQRNELQLLKDRLQRQ 139

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L   N +L K  +IK+ F+  +S+E+R+PLT I+G  DLL+   +G L+ +Q   ++
Sbjct: 140 NVELARINASLLKTTKIKDEFLASMSHEIRTPLTAILGMVDLLRAQLVGPLSDEQMGAID 199

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   S  LL+L+ND LD+A V+AG M+L+ + + + D+   ++  +A  +   N+ +  
Sbjct: 200 GIKKGSQHLLSLINDYLDIAKVEAGRMELDLTPVSVQDVCMSLRPLVADLIRRANLSLIF 259

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSS 729
             D  +   +AD +RL QI   +LSNA+ F+  G  V L  +   + G   F+V + G  
Sbjct: 260 DIDSAVQVILADARRLRQILINLLSNAIKFTPAGGKVGLEVRGEPERGAVRFTVWDTGIG 319

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I  +    +F  F  + +  + +  G GLGL++V   + LHGG V + S
Sbjct: 320 ISAEDAVRLFEPFQQIESERQKEVTGSGLGLALVAKLVRLHGGSVRVES 368


>gi|262381814|ref|ZP_06074952.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301310286|ref|ZP_07216225.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|262296991|gb|EEY84921.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831860|gb|EFK62491.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 364

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 11/239 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ E+     K++ +K+SF+ ++S+E+R PL  I+GF+ LL   + G L   + +Y+  
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++ +LL +VND+LDLA +++G M  ++    L  L+ E   S   K+      + + 
Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRG---VALT 240

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
               L SF+  +DR RL Q+    ++NA+ ++S GS ++   A +N + + SV + G  +
Sbjct: 241 YPESLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAMEN-EVLLSVTDTGEGM 299

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            E++   VF+RF     R Q++G+GLGLSI ++ I   GG + +SS     +   C +P
Sbjct: 300 SEEIKLHVFDRFYKG--RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|29347433|ref|NP_810936.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339333|gb|AAO77130.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 720

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 136/243 (55%), Gaps = 4/243 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T + VT     E AL +      +A+ +K+SF+ ++S+E+R+PL  I+GF+ LL +++ G
Sbjct: 467 TSMTVTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERG 526

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               KQ +Y+  I  ++T+LL L++D+LDL+ ++AG M+ +Y+ I ++ L  E++ +   
Sbjct: 527 ISEEKQ-EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPIDVHGLFIELEDTFRL 585

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +  ++ I I            ADR RL+Q+   +++NA+ F+ +GS       R++G   
Sbjct: 586 RNKKSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLH 645

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDE 779
           F V + G  IPE+  + +F  FV      Q  G GLGL+I  + +   GG + ++S   +
Sbjct: 646 FYVTDTGCGIPEERLEEIFGNFVKLNSFVQ--GTGLGLTICRAIVERMGGKIGAVSRLGQ 703

Query: 780 GVT 782
           G T
Sbjct: 704 GST 706


>gi|294335677|gb|ADE62388.1| styrene sensor kinase [Pseudomonas sp. LQ26]
          Length = 979

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 136/270 (50%), Gaps = 17/270 (6%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEAL-------RKADEIKNSF 572
           + +YS+ PL + +  + F+     N+T   + E+ +  KN  L       R  DE KN F
Sbjct: 129 IADYSLTPLRDDRGEVAFLLAEGRNITSKKQYEQEIARKNAELEKLVDQIRMLDEQKNRF 188

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
             ++S+ELR+PL+ I+G  D +  S  G  +  Q   +  I  ++  LL  VN++LDLA 
Sbjct: 189 FSNLSHELRTPLSLILGPVDEMLVS--GEFSDLQRTNLASIRRNAVTLLRHVNELLDLAK 246

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           VDAG ++L Y    +  L+ E+        +++ I   V+S G +    AD +++  +  
Sbjct: 247 VDAGKLQLAYERFDVTALVEEITAHFEAHANQHRIHCAVLSPGPV-LLEADSEKISHVIF 305

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQ 750
            +++NA + +  G  +  +        + SV + G  IP DM + +F RF      H   
Sbjct: 306 NLVANAFNATPDGGRISCRVEPVADRVLISVTDTGPGIPADMRQRIFERFQQGIEDHGQA 365

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           R G GLGL+IV+ FI LHGG V++  +  G
Sbjct: 366 RAGTGLGLAIVKEFIELHGGTVTVGEAPAG 395



 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 49/257 (19%), Positives = 104/257 (40%), Gaps = 26/257 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++ +  RAE  L E    L +   +      V  +++EL  PLT ++  +   +    G+
Sbjct: 723 DIDERKRAEHELEEARSELARVMRVTAMGELVASITHELNQPLTALVANSHACRRWLSGT 782

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL------NYSTIVLNDLLNEVK 655
             + Q   +   +        ++ D    A V   + K           + L+ ++ EV 
Sbjct: 783 PPNLQEGILSMEA--------VIRDSQRAAEVALRLRKFMRRGENQQEMLCLSGVVEEVL 834

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
             +   +   NI +       L   +ADR +L Q+   ++ N++D     + VI + +  
Sbjct: 835 DYVRESLTMQNISLLTNLPIDLPLVLADRIQLQQVVLNLILNSVDAIKSAAPVIPRLSLR 894

Query: 714 ----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
                 +G     V++NG  +     + +F  F +     + +G+G+GL+I  + +  H 
Sbjct: 895 VSQVEISGCIQLEVEDNGCGVTAAQAERIFEPFYTT----KTQGMGMGLAICRTILEAHN 950

Query: 770 GHVSISSSDEGVTTINC 786
           G +++ +  +G  T  C
Sbjct: 951 GQLNLLNPSDGKATSGC 967


>gi|309390020|gb|ADO77900.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 175/346 (50%), Gaps = 39/346 (11%)

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES--DGWDLFAA 502
           +GV     +G + L NPA R ++  E  ++   T I ++ +     Y +   D  ++ + 
Sbjct: 266 DGVIAVNAEGEVTLINPAARRIFNIEAEKIRGKTLISSLFSHRIDMYLQRAFDKKEVISR 325

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNE 560
            I   + E+K +Q T             IPL  A   L    + +TD       +TE   
Sbjct: 326 EIKYKNPEQKIIQATF------------IPLLAADKKLNGGVIVLTD-------ITE--- 363

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            LRK + ++N FV +VS+ELR+PLT+IIG+ D L  S +   ++++ ++++ I   +  L
Sbjct: 364 -LRKLETVRNDFVANVSHELRTPLTSIIGYLDTLLESDIEDQDTRE-RFLQIIKEETDRL 421

Query: 621 LNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            NL+ND+L+L+ +++ I KL   N+  IV   ++N + Q    +  E N+ I    D  L
Sbjct: 422 SNLINDLLNLSKIESQIFKLEADNFEKIV-KKVVNLLSQKAKKQKLELNLEI----DNNL 476

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                 R+++ Q+   ++ NA+ ++++G  V +K  ++     FSV++NG  IP+   + 
Sbjct: 477 PLVYMVREQIKQVLINLIDNAIKYTAEGGKVEVKVKQEKDKIYFSVQDNGMGIPQADQER 536

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +F RF  V  A      G G+GLSIV + I  HG  + + S  EGV
Sbjct: 537 IFERFYRVDKARSRALGGTGIGLSIVRNIIKQHGSEIQLKSR-EGV 581


>gi|91976421|ref|YP_569080.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
 gi|91682877|gb|ABE39179.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
          Length = 607

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 3/249 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           +VTD    E+AL +      +AD  K+ F+  +S+ELR+PL  IIGF+D+ L   +L   
Sbjct: 328 DVTDRKLQEQALEQARAEASRADASKSRFLATMSHELRTPLNAIIGFSDMILHEDELMLA 387

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y + I+ S   LL++VN ILD++ +++G  ++          L      +A K 
Sbjct: 388 PERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALKA 447

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            EN I +   +   L   V D +   QI   ++SNA+ F+ +G TV ++AA +    +  
Sbjct: 448 RENGIELVTRAPEDLPEIVGDARAFKQILLNLVSNAIKFTERGGTVSVEAAVEAARLVLR 507

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++NG  I  +  K + + F       QRR  G GLGLSIV+S + LHGG + ++S  + 
Sbjct: 508 VRDNGVGIAAEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGKIDVTSEVDR 567

Query: 781 VTTINCRIP 789
            T +   +P
Sbjct: 568 GTIVTISLP 576


>gi|282866741|ref|ZP_06275781.1| histidine kinase [Streptomyces sp. ACTE]
 gi|282558440|gb|EFB64002.1| histidine kinase [Streptomyces sp. ACTE]
          Length = 596

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR+A E K  F  +VS+ELR+P+ +++G   LL       L+ +Q + +  IS
Sbjct: 208 LEEKSRQLREASEAKTRFWANVSHELRTPVNSVVGLARLLLDFDEARLDEEQRRQISLIS 267

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   LL LV+++LD+A  ++G ++  ++ + L   L +++  +  + +E+    ++I  
Sbjct: 268 ASGATLLALVDELLDVAKAESGRLEPTWAAVDLRAALGQLRGIL--RGYESPGAAELIVA 325

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIP 731
                 V+D   L++I   +LSNA+ F+  G+  +  A+ D    GD +F+V + G  IP
Sbjct: 326 ESDVRIVSDEIMLVRILRNLLSNALKFTPTGTVRLDVASEDGDEGGDVVFTVSDTGIGIP 385

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  + +F  F  V   H+  R G GLGL        L GG ++++SS    T +  R+P
Sbjct: 386 EDEQQQIFEEFYQVRGPHQRGRSGTGLGLPYARRLTELLGGRLTLTSSPGAGTVVTVRLP 445

Query: 790 S 790
           +
Sbjct: 446 A 446


>gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 503

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 117/208 (56%), Gaps = 4/208 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +++N F+  VS+ELR+PLT+++G  DLL T +LG+L  K    +   + ++  L+ L+ND
Sbjct: 273 QLENEFISLVSHELRTPLTSLMGALDLLGTGQLGNLTPKGQHVLRIATTNTERLIRLIND 332

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL  + AG + +        +L+ +  +++    H+ N+++ V  +    + +AD  R
Sbjct: 333 ILDLERIKAGKITMQKVRCDAAELITQAAEALQEMAHQANLQLVV--EPIAVALIADPDR 390

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           +LQ  + +LSNA+ FS     V L+   +       V++ G  IP D  +++F RF  V 
Sbjct: 391 ILQTLTNLLSNAIKFSEPQGRVWLRGQVEGEILHLQVQDQGRGIPADKLQTIFERFQQVD 450

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +   ++ G GLGLSI  S +NLHGG +
Sbjct: 451 ASDSRKKGGTGLGLSICRSIVNLHGGKI 478


>gi|289678178|ref|ZP_06499068.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 425

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L+   +G + 
Sbjct: 140 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 199

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+     +  +  
Sbjct: 200 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 259

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
             +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L        +A   
Sbjct: 260 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 319

Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
           +GD+                  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 320 DGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 378

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 379 GLAMVKQLTELHGGCVAVAS 398


>gi|21228875|ref|NP_634797.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907403|gb|AAM32469.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 807

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 5/249 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E  L EK  A   A+  K+ F+ ++S+ELR+PL +IIGF+D+L     G LN
Sbjct: 557 DITEKKITENLLHEKQMA-EFANRTKSEFLANMSHELRTPLNSIIGFSDMLYEQAYGELN 615

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ + +  IS S   LLNL+N ILDL+ ++A  M+L+Y    L   L+ ++  ++    
Sbjct: 616 QKQLRAISNISNSGKHLLNLINGILDLSKIEANKMELDYKEFELASSLDLIRNILSPIAD 675

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           + NI I+   D  +    AD  R ++I   ++ NA+ FS + S V +   R  G+ +  +
Sbjct: 676 KKNIEIETGVDSSISKICADEDRFIRIMFNLVDNAIKFSFENSLVKI-GTRKKGELVEIT 734

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  +    +F  F  V++    + +G GLGLS+V+  +NLHGG+V   S    
Sbjct: 735 VEDTGIGIKTEDQNKLFKPFSQVNSFSSKKFQGTGLGLSLVKQIVNLHGGYVWFKSEQGK 794

Query: 781 VTTINCRIP 789
            +T    IP
Sbjct: 795 GSTFAFAIP 803


>gi|116749638|ref|YP_846325.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698702|gb|ABK17890.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 823

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 129/233 (55%), Gaps = 2/233 (0%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L +AD +++ FV ++S+ELR+PL +IIGF+ LL  ++ G+L +    Y E I+ +  
Sbjct: 309 NMELLEADHLRSEFVANMSHELRTPLNSIIGFSGLLMKNRGGNLVATDLSYAEKINRNGK 368

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LLNL+NDILDL+ ++AG M+L      ++ L  EV   +  +  E N+ +   + G++ 
Sbjct: 369 HLLNLINDILDLSKIEAGRMELQIGPTRIDVLTKEVVDMLRPQADERNLSLTFETAGEIP 428

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F  D ++L ++   +L NA+ F+ KG   +   ++        V ++G  IP+D  +++
Sbjct: 429 MFETDGEKLKRVLINLLGNAIKFTHKGGVKVRLISQSGHRLNIEVNDSGIGIPQDKLETI 488

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F  V ++   +  G GLGL+I  S + +  G +S+SS     +T    +P
Sbjct: 489 FQPFRQVDSSTSREYGGTGLGLTITRSIVEMLRGEISVSSKPGEGSTFTVSLP 541


>gi|298385109|ref|ZP_06994668.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262253|gb|EFI05118.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 720

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 136/243 (55%), Gaps = 4/243 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T + VT     E AL +      +A+ +K+SF+ ++S+E+R+PL  I+GF+ LL +++ G
Sbjct: 467 TSMTVTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERG 526

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               KQ +Y+  I  ++T+LL L++D+LDL+ ++AG M+ +Y+ + ++ L  E++ +   
Sbjct: 527 ISEEKQ-EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRL 585

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +  ++ I I            ADR RL+Q+   +++NA+ F+ +GS       R++G   
Sbjct: 586 RNKKSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLH 645

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDE 779
           F V + G  IPE+  + +F  FV      Q  G GLGL+I  + +   GG + ++S   +
Sbjct: 646 FYVTDTGCGIPEERLEEIFGNFVKLNSFVQ--GTGLGLTICRAIVERMGGKIGAVSRLGQ 703

Query: 780 GVT 782
           G T
Sbjct: 704 GST 706


>gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 878

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 9/228 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N  L+KA E K+ F+ ++S+E+R+PL  I+G +DLL+ S    LN  Q  YV+   
Sbjct: 482 LIDLNVQLKKASETKSEFLANMSHEIRTPLNVIVGMSDLLEES---PLNEDQKHYVDISK 538

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +   LL+++NDILD++ ++AG++ L  + + L+ L+N++ +    K  E N+ + V +S
Sbjct: 539 KAGHNLLSIINDILDISKIEAGLLTLEKTEVDLHSLVNDITEMFELKAREKNLELSVYLS 598

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSI 730
           +     F+ D  R+ Q+ S ++SN++ F++ GS    V+       G+ IF V + G  I
Sbjct: 599 EDTHSIFMGDPTRIRQVLSNLISNSLKFTTDGSIRVEVMKNQTEMEGNLIFHVSDTGIGI 658

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           P D    +F  F        R+  G GLGLSI +  + +  G +++ S
Sbjct: 659 PRDKIPQLFQPFTQADSTITRKFGGTGLGLSISKRLVKMMNGDITVES 706


>gi|120553191|ref|YP_957542.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120323040|gb|ABM17355.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 484

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 134/257 (52%), Gaps = 4/257 (1%)

Query: 526 LEYSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E S+ PL   + +L      ++T+  R ERAL +KN+ L  A++ K+ F+  +S+ELR+
Sbjct: 215 IEISLSPLETEEGILVSSAIRDITERKRFERALQDKNQELATANKAKDQFLASMSHELRT 274

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  IIGFT  L     G LN  Q + +  + +S+  LL+L+ND+LD+A +DAG ++L  
Sbjct: 275 PLNAIIGFTGTLLMGLPGPLNDDQKKQLGTVRSSAQHLLSLINDLLDVAKIDAGKLELKP 334

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             I LN LL E+  + + +  E  + + +    +  +   DR+ L QI   ++SN + F+
Sbjct: 335 ENINLNQLLEEIHGTFSLQAREKALELGLQLPDQPVNLETDRRALSQIVMNLISNGLKFT 394

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIV 761
            +G   +     +       V++ G  I     +++F  F       +R  G GLGL + 
Sbjct: 395 HEGGVYVTLVRPNPQSVHVCVRDTGPGIDTSAQENLFQPFSRGVLSSRRTEGTGLGLYLS 454

Query: 762 ESFINLHGGHVSISSSD 778
           +   N  GG++ +  SD
Sbjct: 455 QKLANQLGGNIQLQRSD 471


>gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
 gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
          Length = 861

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 123/527 (23%), Positives = 233/527 (44%), Gaps = 49/527 (9%)

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
           RV +  GEA + I++     V  QL   ++ L ++    A F   R ++  N +++  +E
Sbjct: 62  RVKSELGEAHVKIEM-----VEGQL---WKALQSMRDGFATFSAERMMELANPAYLAPFE 113

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQT 399
             L  +    S   +LE +     +  Q    ++W E + + +       +T  L  GQ 
Sbjct: 114 -GLDTIGPGASYRHVLEMMVEEGIVDLQGEPRRSWHERMTARWDMDPIPSETLRLWTGQF 172

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           + +     P GG + +  ++T   +L   ++ L        + L +G  ++  + R+ + 
Sbjct: 173 IKMQDRHLPDGGVVSLCVDIT---ELMRMWSAL--------EELPDGFVIYDAEDRMLMC 221

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--------ER 511
           N  +R+++K     + PG    +I     RY  E      +AA +   +D         R
Sbjct: 222 NEPYRAIYKASAPAIVPGASFEDIL----RYGLERGQ---YAAAVGREEDWLEERLSAHR 274

Query: 512 KSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +     + L D   L     PL +   +   +++TD    +R L E       A   K+
Sbjct: 275 HASHEMEQQLGDGRWLRIYERPLRDGGRVGLRIDITDVKDTQRELEEARIRAETASRAKS 334

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           SF+ ++S+E+R+P+  ++G  +LL+ S    L  +Q  YV+ I  S   LL ++NDILD 
Sbjct: 335 SFLANMSHEIRTPMNGVVGMAELLRES---PLTDEQRLYVDTIRGSGEALLVIINDILDY 391

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689
           + ++A  +KL+  +  L   ++EV   +     E  + +    D  L    V D  R+ Q
Sbjct: 392 SKIEADKLKLSAESFDLERAVHEVLLLLQPTAREKGLEMLAEYDMFLPQRVVGDPGRVRQ 451

Query: 690 IFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           I + ++ NA+ F+++G  ++    L+ A    D   +V++ G  +P D  + +F  F + 
Sbjct: 452 ILTNLVGNAVKFTNEGHVLVRVLGLRHAHGALDVRITVEDTGVGVPADKIEHIFGEF-NQ 510

Query: 746 AHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           A   + R   G GLGL+I +  + +  G + + S     +    RIP
Sbjct: 511 AEDDRNRPFEGTGLGLAITKRLVEMMEGEIWVKSEPGQGSCFGLRIP 557


>gi|160887907|ref|ZP_02068910.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492]
 gi|317477835|ref|ZP_07937021.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156862593|gb|EDO56024.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492]
 gi|316905971|gb|EFV27739.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 462

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 135/233 (57%), Gaps = 5/233 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    ER L    E   +++ IK++F+ ++S+E+R+PL  I+GF+ +L T       
Sbjct: 210 DITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILATE---VSE 266

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y++ I  ++ +LL L+NDILDL+ ++AG ++  Y+ + +N +++E++Q+ + ++ 
Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             ++R+  ++         D++R+ Q+F+  +SNA+ F++ GS  I     +N    F V
Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAAGSITIGYGMPENSYIRFYV 386

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + G+ I  +  + +FNRFV      Q  G GLGL+I ++ +    G + + S
Sbjct: 387 TDTGTGISSENAQGIFNRFVKLDSFKQ--GTGLGLAISQNIVKELKGEIGVES 437


>gi|330938948|gb|EGH42439.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 576

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L+   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
             +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L        +A   
Sbjct: 411 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470

Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
           +GD+                  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 DGDWPTYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549


>gi|170740792|ref|YP_001769447.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168195066|gb|ACA17013.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 512

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 128/246 (52%), Gaps = 7/246 (2%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++K    G   S   Q
Sbjct: 242 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPSYQ 301

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ E +  +  +    N 
Sbjct: 302 EYSTDIHESGLHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMGLRARAKNQ 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
             + + D  L    AD + + QI   ILSNA+ F+  G  + +K     +G    S+K+ 
Sbjct: 362 NFRELVDPSLPRLWADERAVRQIVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIKDT 421

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPED   +V + F   S A +   +G GLGL IV+  ++LHGG   + S     T +
Sbjct: 422 GPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFQLKSKPREGTEV 481

Query: 785 NCRIPS 790
               P+
Sbjct: 482 IVTFPA 487


>gi|270294837|ref|ZP_06201038.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270274084|gb|EFA19945.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 462

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 135/233 (57%), Gaps = 5/233 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    ER L    E   +++ IK++F+ ++S+E+R+PL  I+GF+ +L T       
Sbjct: 210 DITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILTTE---VSE 266

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y++ I  ++ +LL L+NDILDL+ ++AG ++  Y+ + +N +++E++Q+ + ++ 
Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             ++R+  ++         D++R+ Q+F+  +SNA+ F++ GS  I     +N    F V
Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAAGSITIGYGMPENSYIRFYV 386

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + G+ I  +  + +FNRFV      Q  G GLGL+I ++ +    G + + S
Sbjct: 387 TDTGTGISSENAQGIFNRFVKLDSFKQ--GTGLGLAISQNIVKELKGEIGVES 437


>gi|253572573|ref|ZP_04849975.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251837988|gb|EES66077.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 419

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 135/242 (55%), Gaps = 8/242 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +LT  +VT+    +R L  + E    AD++K++F+ ++S+E+R+PL  I+GF+ L+ T
Sbjct: 159 RMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMAT 218

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +   ++  Y + IS ++  LL LVNDI DL+ +DAG++   YS    NDLL E+K 
Sbjct: 219 A---TSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELKG 275

Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
               +++EN + + ++ +  L   +  +++QR++Q+ + +L NAM F+  G         
Sbjct: 276 LFGMRLNENPL-VTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKTGEIRFGCHME 334

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +  F V + G  IPE+  + +F+RF       Q  G GLGL++ +  ++  GG   +
Sbjct: 335 GTDEVCFYVSDTGIGIPEEEQEKIFSRFTKLDREMQ--GTGLGLTLSQIIVHNLGGRCGV 392

Query: 775 SS 776
            S
Sbjct: 393 ES 394


>gi|330975736|gb|EGH75802.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 576

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L+   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
             +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L        +A   
Sbjct: 411 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470

Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
           +GD+                  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 DGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549


>gi|126659307|ref|ZP_01730443.1| Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126619389|gb|EAZ90122.1| Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 835

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 6/254 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LP   ++    +VT   +  + L  KN  L + + +K+ F+  +S+EL+SPLT ++G + 
Sbjct: 299 LPIPISIFVATDVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSS 358

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+  K+G LN +Q  Y + I  S   L+ LVND+LDL  ++ G +KL++S + + ++  
Sbjct: 359 LLQEDKIGQLNPRQIHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIKEICE 418

Query: 653 EVKQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
               SI  K     +  +   +  +  L   +AD  RL Q+ + +L NA+ F+       
Sbjct: 419 RAYHSITEKYKSKSDQPLDFSLEIEPGLKQLLADELRLHQMLTHLLDNAIKFTQTEGKFG 478

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           LK  R      F++ + G  IPE+    +F +F  + N    Q  G GLGL + +     
Sbjct: 479 LKVNRWEDWLAFTIWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARA 538

Query: 768 HGGHVS-ISSSDEG 780
           HGG +S +S + +G
Sbjct: 539 HGGDISFVSKAGQG 552


>gi|330969226|gb|EGH69292.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 576

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L+   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
             +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L        +A   
Sbjct: 411 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470

Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
           +GD+                  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 DGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549


>gi|220924683|ref|YP_002499985.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949290|gb|ACL59682.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 513

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 7/246 (2%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++K    G   S   Q
Sbjct: 242 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPSYQ 301

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ E +  +A +    N 
Sbjct: 302 EYSTDIHDSGMHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMALRARAKNQ 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
             + + D  L    AD + + Q+   ILSNA+ F+  G  + +K     +G    S+K+ 
Sbjct: 362 VFRELVDPSLPRLWADERAVRQVVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIKDT 421

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPED   +V + F   S A +   +G GLGL IV+  ++LHGG   + S     T +
Sbjct: 422 GPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFRLKSKPREGTEV 481

Query: 785 NCRIPS 790
               P+
Sbjct: 482 IVTFPA 487


>gi|66044351|ref|YP_234192.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255058|gb|AAY36154.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 576

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L+   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
             +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L        +A   
Sbjct: 411 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470

Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
           +GD+                  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 DGDWPTYGFALASGDCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549


>gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 623

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 125/241 (51%), Gaps = 4/241 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +   N  L +A + K+ F+  +S+ELR+PLT+I+G ++ +    LG L+++Q + +  
Sbjct: 223 RQMDRANAELARAAQAKDEFLAAMSHELRTPLTSILGLSETMGDGLLGPLSAQQEKAIRM 282

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  + T LL L+NDILD++ V +G M L +  + ++ L     + I        +++ + 
Sbjct: 283 VHENGTHLLELINDILDMSRVASGQMHLRWDQVPVDQLCEASLRLIGPSAKRKGLKVSLT 342

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSI 730
            D +      D +RL Q+   +L NA+ F+ +G  + L  +A  ++G+  F + + G  I
Sbjct: 343 IDPQARLVRGDSRRLKQMLVNLLGNAVKFTPEGGAIGLDVQADPEHGELRFGIWDTGVGI 402

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  + +F  FV    R  R+  G GLGL++V     LH G + + S     +    R+
Sbjct: 403 PREQFERLFQPFVQLDSRPARQYDGTGLGLALVSGMAELHQGRIQVESEVGRGSRFEIRL 462

Query: 789 P 789
           P
Sbjct: 463 P 463


>gi|315923456|ref|ZP_07919696.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313697331|gb|EFS34166.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 419

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 179/334 (53%), Gaps = 26/334 (7%)

Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529
           R+    H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   E  
Sbjct: 81  RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--ETK 138

Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           + P   + +            +LT  +VT+   A+R L+ + E    AD++K++F+ ++S
Sbjct: 139 VTPCDVSVSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMS 198

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ L+ ++   S   ++  Y + I+ ++  LL LVNDI DL+ +++G 
Sbjct: 199 HEVRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGT 255

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695
           +   Y+    NDLL E++    TK+  NN  ++++ +  +   +  ++R+R++Q+ S +L
Sbjct: 256 VDFVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLL 313

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
            NAM F+  G   +  + +   +  F V + G  IP++  K +F+RF+      Q  G G
Sbjct: 314 HNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTG 371

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL++ ++ I   GG++ + S     +T +  +P
Sbjct: 372 LGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 405


>gi|302188804|ref|ZP_07265477.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 576

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 135/260 (51%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
             +I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L        +A   
Sbjct: 411 LQHIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 470

Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
           +GD+                  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 DGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLAELHGGCVAVAS 549


>gi|46581020|ref|YP_011828.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450441|gb|AAS97088.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234704|gb|ADP87558.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1000

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 152/300 (50%), Gaps = 13/300 (4%)

Query: 500 FAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           F+    S D E+  +   GTL   + S++E   +P     TML  V+VT      RAL  
Sbjct: 540 FSGQARSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQR 599

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             +A   A+  K  F+ ++S+E+R+PL  I+G   LL ++    L+ +Q QYV    +SS
Sbjct: 600 SKKAAESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTP---LDDEQKQYVSNAISSS 656

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             L  L++D+LDL+ ++AG + L    +  ++LL+ +K         + + + + IS G 
Sbjct: 657 GRLSQLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGL 716

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIP 731
               + D  RL QI   ++ NA+ F+ KG   V L     +G      + SV++ G  IP
Sbjct: 717 PQHILLDGGRLRQILFNLVGNALKFTEKGHIHVRLDELAIHGGMRQLLLISVEDTGIGIP 776

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   + +FN F  V  +H  ++ GVGLGLSIV   +   GG + I S++   T I+  +P
Sbjct: 777 QGAMRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLP 836


>gi|160882174|ref|ZP_02063177.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
 gi|260175224|ref|ZP_05761636.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156112429|gb|EDO14174.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
          Length = 422

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 179/334 (53%), Gaps = 26/334 (7%)

Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529
           R+    H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   E  
Sbjct: 84  RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--ETK 141

Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           + P   + +            +LT  +VT+   A+R L+ + E    AD++K++F+ ++S
Sbjct: 142 VTPCDVSVSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMS 201

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ L+ ++   S   ++  Y + I+ ++  LL LVNDI DL+ +++G 
Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGT 258

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695
           +   Y+    NDLL E++    TK+  NN  ++++ +  +   +  ++R+R++Q+ S +L
Sbjct: 259 VDFVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLL 316

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
            NAM F+  G   +  + +   +  F V + G  IP++  K +F+RF+      Q  G G
Sbjct: 317 HNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTG 374

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL++ ++ I   GG++ + S     +T +  +P
Sbjct: 375 LGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 408


>gi|294054561|ref|YP_003548219.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613894|gb|ADE54049.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 1071

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 131/234 (55%), Gaps = 20/234 (8%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            KNEA   +D IK +F+Q++S+E+R+P+  I+GF ++LK   L     +   +   I ++S
Sbjct: 825  KNEA-ELSDRIKTAFLQNMSHEIRTPMNAIVGFLEMLKADDL--TREEHDDFSNIIRSNS 881

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE---NNIRI----- 669
              LL L++DILD+A ++AG ++++   ++LNDL+ E++     + H+   + I++     
Sbjct: 882  QTLLVLIDDILDMARLEAGELRIDREPVLLNDLMYELEAVFEQERHQLTKSEIKLYFDET 941

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKN 725
             +ISD KL   + D  RL QI   +L NA+ F+ KG    S  +L    +N    F+V +
Sbjct: 942  YLISDFKL---MTDPTRLRQILGNLLGNALKFTDKGRIWFSYRLLDEDHENPQIEFTVGD 998

Query: 726  NGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             G  IPE+    +F RF     +  G  RG GLGL+IVE    + GG V + S+
Sbjct: 999  TGIGIPEEHLNVIFKRFRKGDGSDTGLYRGAGLGLAIVEKLTTIMGGRVVVEST 1052


>gi|120601684|ref|YP_966084.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561913|gb|ABM27657.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1000

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 152/300 (50%), Gaps = 13/300 (4%)

Query: 500 FAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           F+    S D E+  +   GTL   + S++E   +P     TML  V+VT      RAL  
Sbjct: 540 FSGQARSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQR 599

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             +A   A+  K  F+ ++S+E+R+PL  I+G   LL ++    L+ +Q QYV    +SS
Sbjct: 600 SKKAAESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTP---LDDEQKQYVSNAISSS 656

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             L  L++D+LDL+ ++AG + L    +  ++LL+ +K         + + + + IS G 
Sbjct: 657 GRLSQLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGL 716

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIP 731
               + D  RL QI   ++ NA+ F+ KG   V L     +G      + SV++ G  IP
Sbjct: 717 PQHILLDGGRLRQILFNLVGNALKFTEKGHIHVRLDELAIHGGMRQLLLISVEDTGIGIP 776

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   + +FN F  V  +H  ++ GVGLGLSIV   +   GG + I S++   T I+  +P
Sbjct: 777 QGAMRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLP 836


>gi|163759054|ref|ZP_02166140.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283458|gb|EDQ33743.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 642

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 134/263 (50%), Gaps = 8/263 (3%)

Query: 534 PNAQTMLTFV---NVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P+      FV   +++D V    RA T  +EA   A+  K  F+  VS+ELR+PL  I+G
Sbjct: 334 PDGSFAGVFVQSRDISDQVAGRLRASTMADEA-DMANASKTRFLAAVSHELRTPLNAILG 392

Query: 590 FTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           F+D+L     G  N  +Q +YVE I  S   LL LVN +LD++ +++G  ++     +L+
Sbjct: 393 FSDILAREMFGKFNDERQREYVELIHQSGEHLLALVNTMLDMSKIESGRYEVFVEPFLLS 452

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++      +  +  +  + +       LG  VADR+ + QI   ++ NA+ F+  G  +
Sbjct: 453 EVVERCDAMLRLQAEQRGVVMTRRMAPGLGEVVADRRAVQQILINLIGNAIKFTEAGGVI 512

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
            + A    G  + SV + G  IPE+    +   F  V N       G GLGLS+V+  ++
Sbjct: 513 NVDAGIHEGLLVLSVSDTGIGIPEEKLALIGQPFVQVQNGLARHFEGTGLGLSLVKGLVD 572

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           LHGG  +I+S +   T +  R+P
Sbjct: 573 LHGGQFAIASQEGEGTVVTIRLP 595


>gi|218260509|ref|ZP_03475779.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224494|gb|EEC97144.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
          Length = 519

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 148/276 (53%), Gaps = 19/276 (6%)

Query: 523 DSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQ 574
           D+V+E S IP+          ++   +++D  R ER   E    ++KADE   +K++F+ 
Sbjct: 253 DTVIEISAIPVYTNTGEIQGGLMKIEDISDKKRIERLQYE----VKKADEANRLKSAFLA 308

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  IIGF++LL  +   +   ++ ++V  I++++ +LL L+NDI+D+A ++
Sbjct: 309 NMSHEIRTPLNAIIGFSNLLVEA---NDPEEKKEFVHIITSNNELLLQLINDIIDMAKIE 365

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATK-MHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +G +   YS   +N L+ ++ Q +  K    ++++I+ +          D  R++QI   
Sbjct: 366 SGTLDFTYSDTDINQLMEDLCQQMKMKNTRPDSVKIEFVQRQSECIINTDSNRIMQIMIN 425

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NAM F+ +GS +     +   D  F V++ G  IP D  + +F+RFV      Q  G
Sbjct: 426 FMTNAMKFTEQGS-ITFGYKKSEKDIYFFVRDTGIGIPSDKKEQIFDRFVKLNTFAQ--G 482

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL I    ++  GG + + S      T   R+P
Sbjct: 483 TGLGLPICAMIVDKFGGTIGVDSQQGEGATFWFRLP 518


>gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1211

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 129/252 (51%), Gaps = 9/252 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA ++L EK E L  + + K+ F+ ++S+ELR+PL +++    LL  + L +L  KQ +Y
Sbjct: 509 RARKSLEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILARLLADNSLNNLTDKQVEY 568

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I ++ T LL L+NDILDLA +++G M L+   I   DL   ++Q+     H   +  
Sbjct: 569 SRTIYSAGTDLLELINDILDLAKIESGTMSLDIEQIAFADLETSLEQTFRQVAHNKELSF 628

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-----TVILKAAR-DNGDFIFS 722
            +  D KL   +  D +RL Q+   +L+NA  F+ +G      T+   AA+ DN    F+
Sbjct: 629 TIELDSKLPPTIYNDSKRLQQVLKNLLANAFKFTERGGVKLEITMSSDAAQIDNPMVAFA 688

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP +  K +F  F        R+  G GLGLSI      L GG + + S    
Sbjct: 689 VSDTGIGIPAEKQKVIFEAFQQADGTTSRKYGGTGLGLSISRELAQLLGGRIELVSKPGQ 748

Query: 781 VTTINCRIPSKE 792
            +T    +P ++
Sbjct: 749 GSTFTLYLPRRQ 760


>gi|299147530|ref|ZP_07040594.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298514317|gb|EFI38202.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 422

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 179/334 (53%), Gaps = 26/334 (7%)

Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529
           R+    H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   E  
Sbjct: 84  RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--ETK 141

Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           + P   + +            +LT  +VT+   A+R L+ + E    AD++K++F+ ++S
Sbjct: 142 VTPCDVSVSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMS 201

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ L+ ++   S   ++  Y + I+ ++  LL LVNDI DL+ +++G 
Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGT 258

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695
           +   Y+    NDLL E++    TK+  NN  ++++ +  +   +  ++R+R++Q+ S +L
Sbjct: 259 VDFVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLL 316

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
            NAM F+  G   +  + +   +  F V + G  IP++  K +F+RF+      Q  G G
Sbjct: 317 HNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTG 374

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL++ ++ I   GG++ + S     +T +  +P
Sbjct: 375 LGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 408


>gi|189425046|ref|YP_001952223.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421305|gb|ACD95703.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 767

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 138/257 (53%), Gaps = 18/257 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  RAE  L     A   A+  K+ F+ ++S+E+R+P+  +IG   LL+ +    L 
Sbjct: 358 DITERKRAEDELLRAKAAAETANTTKSEFLANMSHEIRTPMNGVIGNAQLLRFT---DLT 414

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIA 659
            +QS+Y+EYI A +  L++++ND+LD++ ++AG M+L  ++  L    NDLL  +   IA
Sbjct: 415 EEQSRYLEYIEADAKHLVSVINDLLDISKIEAGKMELEQTSFSLRGCINDLLKPMTPRIA 474

Query: 660 TKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAAR 714
           TK    N  I   + D   G    D+ RL QI   ++ NA+ F+ +GS      +L+ + 
Sbjct: 475 TKGLIFNTEIANTVPDALTG----DQLRLKQILRNLVGNAIKFTDQGSITLRVELLEHSE 530

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +   F FSV + G  IP++  + +F  F        R+  G GLGLSI      L GG++
Sbjct: 531 NKALFYFSVIDTGIGIPQEALERLFTPFTQADSSVTRKFGGTGLGLSICNRLAGLMGGNI 590

Query: 773 SISSSDEGVTTINCRIP 789
           S+ SS+   +  +  +P
Sbjct: 591 SVESSEGAGSCFHVTLP 607


>gi|13476392|ref|NP_107962.1| two-component, sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
 gi|14027153|dbj|BAB54107.1| two-component, sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
          Length = 356

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 135/235 (57%), Gaps = 14/235 (5%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--- 612
           TE+ EA   A+  K+ F+ ++S+ELR+PL  IIGF++L++    G L S  ++Y EY   
Sbjct: 112 TERAEA---ANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGS--ARYEEYATD 166

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I++S   LL ++NDILD++ ++AG   L+   I L  L++E  + ++ +  +  I ++  
Sbjct: 167 INSSGKYLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETR 226

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I+D    S  ADR+ + QI   +LSNA+ F+ +G  + ++A   +G  + ++++NG  IP
Sbjct: 227 IADAL--SLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARNTSGALVLTIEDNGCGIP 284

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           ++    +   F  V N       G GLGL+I  S   L GG + I S+ EGV TI
Sbjct: 285 KEALGKLGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRST-EGVGTI 338


>gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 539

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 16/279 (5%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKADEIKNSFVQHV 576
           EL+ D+  +Y I    N Q    +    +S   R    L + N  L ++  +K+ F+ ++
Sbjct: 149 ELIEDNYRQYRI----NQQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANM 204

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+P+  I GF +LL  +    LN +Q +Y   I  ++  LLNL+NDILDLA ++AG
Sbjct: 205 SHELRTPMNAITGFAELLAET---PLNQEQDEYCRTIRQAAAALLNLINDILDLAKIEAG 261

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKIL 695
            + L      L++LL  V+        +  I I +   +G   +   D  RL Q+   +L
Sbjct: 262 KLDLETVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLL 321

Query: 696 SNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA+ F+ +G   +  A    A D     F+V+++G  I     +++F +F        R
Sbjct: 322 GNAIKFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTR 381

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           R  G GLGL+I    + L GG + +SS     +T +  I
Sbjct: 382 RFGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEI 420


>gi|293373400|ref|ZP_06619755.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631538|gb|EFF50161.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 179/334 (53%), Gaps = 26/334 (7%)

Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529
           R+    H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   E  
Sbjct: 84  RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--ETK 141

Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           + P   + +            +LT  +VT+   A+R L+ + E    AD++K++F+ ++S
Sbjct: 142 VTPCDVSVSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMS 201

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ L+ ++   S   ++  Y + I+ ++  LL LVNDI DL+ +++G 
Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGT 258

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695
           +   Y+    NDLL E++    TK+  NN  ++++ +  +   +  ++R+R++Q+ S +L
Sbjct: 259 VDFVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLL 316

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
            NAM F+  G   +  + +   +  F V + G  IP++  K +F+RF+      Q  G G
Sbjct: 317 HNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTG 374

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL++ ++ I   GG++ + S     +T +  +P
Sbjct: 375 LGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 408


>gi|16331636|ref|NP_442364.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001697|dbj|BAA10434.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 417

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + H+ +E R+PLT IIGF  +L+    G LN KQ QYV+    S+  LL+LVND LDL+ 
Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +DA   +L Y  + + DL   V   + TK  E  + + +  D  +     D++R  QI  
Sbjct: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQILI 309

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRG 749
            +LSN + F+ KGS  +   A D    IFSV + G  I PED  + +F  F  +S+    
Sbjct: 310 NLLSNGVKFTPKGSVTLAVKATDKA-LIFSVIDTGIGIDPEDQ-RDLFQPFKQISHPPSF 367

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +G GLGL++      LHGG + ++S+    +  +  +P K
Sbjct: 368 AEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLK 409


>gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 581

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 16/279 (5%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKADEIKNSFVQHV 576
           EL+ D+  +Y I    N Q    +    +S   R    L + N  L ++  +K+ F+ ++
Sbjct: 149 ELIEDNYRQYRI----NQQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANM 204

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+P+  I GF +LL  +    LN +Q +Y   I  ++  LLNL+NDILDLA ++AG
Sbjct: 205 SHELRTPMNAITGFAELLAET---PLNQEQDEYCRTIRQAAAALLNLINDILDLAKIEAG 261

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKIL 695
            + L      L++LL  V+        +  I I +   +G   +   D  RL Q+   +L
Sbjct: 262 KLDLEAVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLL 321

Query: 696 SNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA+ F+ +G   +  A    A D     F+V+++G  I     +++F +F        R
Sbjct: 322 GNAIKFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTR 381

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           R  G GLGL+I    + L GG + +SS     +T +  I
Sbjct: 382 RFGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEI 420


>gi|2598024|emb|CAA03998.1| styrene sensor kinase [Pseudomonas sp. Y2]
          Length = 982

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 138/281 (49%), Gaps = 18/281 (6%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572
           V++YS+ PL +    + F+     N+T   + E+ +  KN       E +R  DE KN F
Sbjct: 129 VVDYSLTPLRDNHGEVAFLLAEGRNITSKKKYEQEIARKNAELEKLVEQIRMLDEQKNRF 188

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
             ++S+ELR+PL+ I+G  D +  S     +  Q   +  I  ++  LL  VN++LDLA 
Sbjct: 189 FSNLSHELRTPLSLILGPVDEMLVSS--EFSEHQHTNLASIRRNAVTLLRHVNELLDLAK 246

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +DAG ++L Y  I +  L+ E+         +  I   V+S G +    AD +++  +  
Sbjct: 247 IDAGKLQLAYELIDITGLVKEITAHFEAHAKQRRIHCAVLSPGPI-LLEADPEKISHVVF 305

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRG 749
            +++NA + +  G  +        G+  + +V + G  +P DM + +F RF      H  
Sbjct: 306 NLVANAFNATPDGGRISCHVEIGEGNRCLLTVSDTGPGVPPDMRQRIFERFQQGVEEHGE 365

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            R G GLGL+IV+ FI LHGG V++  +          +P+
Sbjct: 366 ARAGSGLGLAIVKEFIELHGGTVTVGEAPSSGAIFQVELPA 406



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 146/359 (40%), Gaps = 57/359 (15%)

Query: 446 GVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPG----THIRNIAATCSRYYNESDGWDLF 500
           G+AV     R   +NPAF R L  T+E  L       TH  +   T  R ++  DG    
Sbjct: 625 GIAVVDLQWRFVNANPAFCRMLGYTQEELLGHSVLEHTHPDDRNITDQRLHHLLDGR--- 681

Query: 501 AAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSV----RAERA 554
              + ++  +++ L      L    SV   S+IP  +  T    + V + +    RAE  
Sbjct: 682 ---LRTYHHQKRFLHKDGHSLWTRSSV---SVIP-GSGDTPPLMIGVVEDIDAQKRAEHE 734

Query: 555 LTEKNEALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           L      L +   +      V  +++EL  PL  ++  +   +      LNS      E 
Sbjct: 735 LERARSELARVMRVTAMGELVASITHELNQPLAAMVANSHACRRW----LNSSPPNLKEG 790

Query: 613 ISASSTILLNLVNDILDLATV-----------DAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           I++   +    V D    A V           +     LN S +V  ++L  V++S+  +
Sbjct: 791 IASVEAV----VRDSQRAAEVVLRLRMFMRRGETQHEPLNLSGVV-EEVLGYVRESLVMQ 845

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR--D 715
                I ++      L   +ADR +L Q+   ++ NA++     S  +    L+  R  D
Sbjct: 846 ----GISLETTLPTDLPMVLADRVQLQQVVLNLVLNAIEAIQAASPSVPRLTLRICRSPD 901

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           NG     V++NG  +P    + +F  F +     +  G+G+GL+I  + +  HGG +++
Sbjct: 902 NGPLRLEVEDNGCGVPSSQTERIFEPFYTT----KSHGMGMGLAICRTILEAHGGQLNL 956


>gi|75907391|ref|YP_321687.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75701116|gb|ABA20792.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 676

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 132/252 (52%), Gaps = 11/252 (4%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           E+ + E+  ALR        A  +++ F+  +S+EL +PLT +IG +  L    LG L+ 
Sbjct: 422 EQRVIERTMALRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQ 481

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-- 662
           +Q  Y++ I  S   LL+++NDILDL+ ++AG   LN +   L  +     +S+  K   
Sbjct: 482 RQRDYLQTIHDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLIKVAENTIESLVEKALS 541

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N+++ +  D +   F AD  R+ QI   +L+NA+ F+ +G  V L+   +    IF 
Sbjct: 542 EKVNLKLDLQIDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRVWVEEDTSIFQ 601

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IPE+    +F +F  +   +R +  G GLGL++ +  + LH G + + S+   
Sbjct: 602 VEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTVGI 661

Query: 781 VTTINCRIPSKE 792
            +     IP +E
Sbjct: 662 GSIFTVWIPYQE 673


>gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 891

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 158/602 (26%), Positives = 257/602 (42%), Gaps = 82/602 (13%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
           K  ET    F KA+        ++I   +I     E+ F   V  L +G  K      VL
Sbjct: 291 KPVETSIDAFMKAVHPEDTERMKQIINNVILKGIHEETFYRIV--LPNGEQK------VL 342

Query: 284 NSFGEAGIAIDVSKEITVN---DQLTHTYEILHNLTVAIAIFDQNRY--LQFHNRSFVEL 338
            S  EA +     K + V      +T   EI   L  +     +NRY  L  HN   +  
Sbjct: 343 RSIWEAEMDEHAGKPVQVVGMIQDVTEHREIEQRLRES-----ENRYKSLFQHNPLGICA 397

Query: 339 WEIDLAFLATNPS--------NDELL--EFLRSANKLPE---QLNWKTWKENIFSVYKSS 385
             ++   L+ NPS         DELL  E L  A+   +   + + +  K+     Y+S 
Sbjct: 398 MNMEGHILSVNPSLEKLTGYTRDELLGTEILVMASSEEQDKIKRHIEMAKQGETQTYESE 457

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             HK+   L    T   I       G   + EN+T   +   +   L       ++ +SE
Sbjct: 458 FIHKEGERLFIKMTNIPIFVQEEIVGCYGIIENVTPLKNYIAQIEKLSNEHSLILNAVSE 517

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G+     +G ++  NPA   ++         G+ I  I     R+ +E         I +
Sbjct: 518 GIVGLNTEGHVRFMNPAAVEMFGIGSANPLNGSCIDVI-----RHADE---------IGS 563

Query: 506 SFDDERKSL-----QGTLELLSDSVL----------EYSIIPLPN----AQTMLTFVNVT 546
            F DE+ S+      G      ++V            Y I PL +       ++ FV+ T
Sbjct: 564 HFPDEQASILQAIRSGASYQAEEAVFWKKDGSSFLASYRISPLMDNGERKGAVMVFVDRT 623

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E+ +    E+  +AD  K+ F+  +S+ELR+P+  IIG   LL  ++L   + +Q
Sbjct: 624 N----EKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL---DEEQ 676

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ I++SS  L+ ++N+ILDL+ ++AG M L + + VL D++  V     T+  E  
Sbjct: 677 RSYIDIITSSSNALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMTQAMEKG 736

Query: 667 IRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFI 720
           I+++   D ++ G  V D  R+ QI   ++SNA+ F+ +G   I       + R     I
Sbjct: 737 IQLEWHVDQEMPGMLVGDHVRIRQILVNLVSNAIKFTERGHVNIFVERKAYSRRKKKCLI 796

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            FSV + G  IP D    +F  F S  H    R   G GLGLSI ++ + L GG + + S
Sbjct: 797 EFSVTDTGIGIPADRQHLLFQPF-SQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDS 855

Query: 777 SD 778
            +
Sbjct: 856 DE 857


>gi|298384034|ref|ZP_06993595.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298263638|gb|EFI06501.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 631

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 132/243 (54%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L   +      +  +Y
Sbjct: 393 KAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIED---RKEMREY 449

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILD++ ++AG      S I +N  + E++QS+  ++ +  + +
Sbjct: 450 ADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTL 509

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ S  + NA+ F+  GS  +    +D     F V + G  
Sbjct: 510 TFTERLPECTLYTDKNRLIQLISNFVINAIKFTQTGSIRMGYRLKDANTICFYVSDTGCG 569

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + E+ CK VF RFV   +    +G GLGLSI +  I+  GG + + S +   +T    +P
Sbjct: 570 MSEEQCKHVFERFVK--YNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627

Query: 790 SKE 792
            ++
Sbjct: 628 YQQ 630


>gi|293368956|ref|ZP_06615557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635976|gb|EFF54467.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 1014

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 136/247 (55%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 629 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEE 685

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++T+LL L++DILDL+ ++AG ++  YS I LN +LNE+  S+  K+  
Sbjct: 686 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKS 745

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +++      K      ++ RL Q+   ++SNA+ F+++G        R   +  F V 
Sbjct: 746 EKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEGYIRFGYELR-GKEIYFYVS 804

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T 
Sbjct: 805 DTGCGIPKDKQKSIFGRFVKLNSFEQ--GTGLGLSICQTLVEHMGGTIGVDSEEGKGSTF 862

Query: 785 NCRIPSK 791
              +P K
Sbjct: 863 WFTLPYK 869


>gi|281206421|gb|EFA80608.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1197

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 153/285 (53%), Gaps = 23/285 (8%)

Query: 526 LEYSIIPL--PNAQTMLTFV---NVTDSVRAERALTEKNEALRKA-------DEIKNSFV 573
           +++S++PL   N +  L      N+T+  +AE  +  KN+ LRK        DE+K  F 
Sbjct: 147 IDFSLMPLFDDNGKVWLILPEGRNITEKKQAEDEIARKNDELRKLYEKIKELDELKTQFF 206

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+PLT I   T+ L      S +SK+  Y+E I+ ++  LL  VN++LD++ +
Sbjct: 207 ANVSHELRTPLTLITHPTEKLLKDPTISASSKK--YLEVIARNTRGLLKHVNNLLDISKL 264

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFS 692
           +AG M++ Y+ + +   ++ +         +NN+    VI DG       D  ++ ++ +
Sbjct: 265 EAGKMEVQYAMVDVGRTVSLIASCFELLARDNNLDYSTVIPDGAALMAAIDSDKINRVIT 324

Query: 693 KILSNAMDFSSKGSTVILKAAR---DNGDFIFSV--KNNGSSIPEDMCKSVFNRF--VSN 745
            ++SNA  F+ +G  + ++  R    +G+  F V   ++G  +PE +   +F+RF  V  
Sbjct: 325 NLISNAFKFTPRGGKIRVQVDRTTMPSGELAFEVVVSDSGPGVPEHLHAIIFDRFRQVDG 384

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIP 789
               +  G GLGLSIV+ F+ LH G VSISSS +G   +   +IP
Sbjct: 385 GSTRKHGGTGLGLSIVKEFVELHKGTVSISSSKQGTGAVFTIKIP 429



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 127/258 (49%), Gaps = 42/258 (16%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L ++   L +A+  K+ F+ ++S+ELR+PL  I+G++ +L+         +    +E 
Sbjct: 665 KQLDQERSLLNQANTHKDEFLMNLSHELRTPLNGILGWSQVLRYEPDA---DELKHGIET 721

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +     LVND+LD++ + +G  ++    I +++++    +S+       N+++ V 
Sbjct: 722 IERCARAQNQLVNDLLDMSLIISGKFQITSEPINISEIIENALESLTFIAKTKNVKLDV- 780

Query: 673 SDGKLGSFVA--DRQRLLQIFSKILSNAMDFS--SKGSTVILKAARDNGDFIFS------ 722
            D K   F A  D  RL Q+   ++SNA+ FS  S+G+ V ++ +R +G  ++       
Sbjct: 781 -DVKQQHFCARGDSTRLQQVIWNLVSNAIKFSKDSQGA-VSVRLSRSDGSDVYGVTGAPA 838

Query: 723 -----------------VKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSI 760
                            V +NG  I  +    VF+RF      S  H G   G+GLGLSI
Sbjct: 839 DHVKQMMATNKSWALIRVTDNGKGISGEFLPHVFDRFRQADCSSTRHYG---GLGLGLSI 895

Query: 761 VESFINLHGGHVSISSSD 778
           V + + LHGG +S + SD
Sbjct: 896 VNNIVELHGG-ISFAYSD 912


>gi|293370846|ref|ZP_06617391.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|299148649|ref|ZP_07041711.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|292634062|gb|EFF52606.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|298513410|gb|EFI37297.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 654

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 129/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L   +      + S+Y
Sbjct: 416 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVEN---REEMSEY 472

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 473 VELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTF 532

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ +    NA+ F+  G+  +     D     F V + G  
Sbjct: 533 TFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCG 592

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +   +T    +P
Sbjct: 593 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650

Query: 790 SKE 792
            ++
Sbjct: 651 YRQ 653


>gi|257059466|ref|YP_003137354.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
 gi|256589632|gb|ACV00519.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
          Length = 442

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  +N+ L K  + K+ ++ H+++ELR+PLT I+GF  +L+    G LN KQ QY+  
Sbjct: 198 KDLESENQRLHKTSQNKSDYLSHINHELRTPLTGILGFAKMLREELYGPLNEKQKQYING 257

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LL LVND LDL+ ++A   ++   TI + D+       + +K  E  I + +I
Sbjct: 258 IAVSGEHLLALVNDFLDLSKIEAEREEIFLETIAVEDICLSAISIVDSKAKEQGINL-II 316

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             G+   F   D++R+ QI   +LSNA+ F+ KGS V L    D     F + + G  I 
Sbjct: 317 EIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS-VTLAVKSDREMLTFCIIDTGIGIK 375

Query: 732 EDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +D  K +F  F    +H  ++ +G GLGL++      LHGG ++++S     +     IP
Sbjct: 376 QDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKLAQLHGGDLTLTSEMGKGSCFTLHIP 435

Query: 790 SK 791
            K
Sbjct: 436 IK 437


>gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 753

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%)

Query: 530 IIPLPN-AQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I P+ N A T++ FV V + +  E A    L +  E   +A  +K+ F+ ++S+E+R+PL
Sbjct: 339 ISPIKNDAGTIINFVAVKEDITKELAYQQELEQAKEVAEEASRLKSEFLANMSHEIRTPL 398

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GFTDLL      + ++K+  ++  I  S   LL L+NDILD + ++A  + L    
Sbjct: 399 NVILGFTDLLLDE---TEDAKKRDHLHLIKDSGKNLLELINDILDFSKIEANKLDLEIDV 455

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
                LL  +K   + +     +   V  D  L   + D+ R+ QI   +LSNAM F+  
Sbjct: 456 FDPKALLQNIKGMFSLEAKRKGLDFTVEHDVPLPELLGDQYRIRQILMNLLSNAMKFTEV 515

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           GS  +     + G   FSV + G  IPE+  K +F+ F       +R+  G GLGLSI  
Sbjct: 516 GSVSLRAHYENTGIMRFSVSDTGIGIPEESRKQIFHPFEQLDGSAKRKFSGTGLGLSITR 575

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             ++L GG++++ S     +T    +P
Sbjct: 576 RLVHLMGGNITLESKAGRGSTFTIELP 602


>gi|332707381|ref|ZP_08427431.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332353872|gb|EGJ33362.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1221

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 131/266 (49%), Gaps = 17/266 (6%)

Query: 528 YSIIPL-----PNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELR 581
           YS  P+     PN+Q  L     T   R   + L  KN  L + + +K+ F+  +S+EL+
Sbjct: 468 YSPSPISRSESPNSQLYLVLAQDTTEQRLFAQELAAKNADLVQLNRLKDEFLACISHELK 527

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+T I+G + LLK   LG LN +QS+Y + I  S   L+ +VNDILDL  ++ G +KL 
Sbjct: 528 TPITAILGLSTLLKDQALGELNQRQSRYAQLIYQSGRKLMTVVNDILDLTRMETGQLKLT 587

Query: 642 YSTI----VLNDLLNEVKQSIATKMHENNIR-----IKVISDGKLGSFVADRQRLLQIFS 692
              +    V +   ++ +  I +K  E+N R       +  +  L   +AD  RL Q+ +
Sbjct: 588 LEPVPIRTVCDRAYDQARSEIDSKHSEDNNRDYPTKFTLEIEASLEMLIADELRLRQMLA 647

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            + SNA+ F+     + LK     G   F+V + G  IP D    +F +F        R 
Sbjct: 648 HLFSNALKFTDGSGEIGLKVNWWQGWIAFTVWDTGIGIPADKQHLIFQKFQQLEKPLTRS 707

Query: 752 -RGVGLGLSIVESFINLHGGHVSISS 776
             G GLGL + +   +LHGG VS  S
Sbjct: 708 FEGTGLGLVLTQHLAHLHGGDVSFIS 733


>gi|237721425|ref|ZP_04551906.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229449221|gb|EEO55012.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 632

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 129/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L   +      + S+Y
Sbjct: 394 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVEN---REEMSEY 450

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 451 VELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTF 510

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ +    NA+ F+  G+  +     D     F V + G  
Sbjct: 511 TFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCG 570

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +   +T    +P
Sbjct: 571 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628

Query: 790 SKE 792
            ++
Sbjct: 629 YRQ 631


>gi|237717539|ref|ZP_04548020.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229453169|gb|EEO58960.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 419

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 179/332 (53%), Gaps = 22/332 (6%)

Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529
           R+    H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   + +
Sbjct: 81  RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVT 140

Query: 530 IIPLPNAQT----------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +  +  + T          +LT  +VT+    +R L+ + E    AD++K++F+ ++S+E
Sbjct: 141 LCDVSVSGTYLNIHGEDYMVLTVYDVTELKNVQRLLSIEREHSISADKLKSAFIANMSHE 200

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+ L+ ++   S   ++  Y + I+ ++  LL LVNDI DL+ +++G + 
Sbjct: 201 VRTPLNAIVGFSGLMVSA---SSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVD 257

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSN 697
             Y+    NDLL E++    TK+  NN  ++++ +  +   +  ++R+R++Q+ S +L N
Sbjct: 258 FVYTEFDANDLLRELEGIFKTKL--NNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHN 315

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           AM F+  G   +  + +   +  F V + G  IP++  K +F+RF+      Q  G GLG
Sbjct: 316 AMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLDREMQ--GTGLG 373

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L++ ++ I   GG++ + S     +T +  +P
Sbjct: 374 LTLSQTIIQNLGGNLELDSEINRGSTFSFVLP 405


>gi|218248943|ref|YP_002374314.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218169421|gb|ACK68158.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 828

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R  + L  KN  L + + +K+ F+  +S+EL+SPLT ++G + LL   K+G LN
Sbjct: 304 DVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLGEQKVGELN 363

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q  Y E I  S   L+ LVND+LDL  ++ G +KL++  + + ++      SI  K  
Sbjct: 364 TRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICERAYHSIIEKYQ 423

Query: 664 ENN---IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                 + I +  +  L   +AD  RL Q+   +L NAM F+     V ++ +R      
Sbjct: 424 SKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVGIRVSRWENWIA 483

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSS 777
           F+V + G  IPE+    +F +F  + N    +  G GLGL + +     HGG +S IS  
Sbjct: 484 FTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARAHGGDISFISKE 543

Query: 778 DEG 780
            +G
Sbjct: 544 GQG 546


>gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
 gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
          Length = 632

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 135/241 (56%), Gaps = 2/241 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + L E  E L++ D++K+  +  VS+ELR+PLT+I G+ +L+    +G LNS Q + 
Sbjct: 391 RHTKELKESYEKLKEIDKLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNSNQRRC 450

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E  + +   L  L++D+LDL+ +++G +K +   + + D++ +V  S+  ++ E NI I
Sbjct: 451 LEIANNNIDRLKRLIDDMLDLSKIESGTIKFDIKDVKIKDMVVDVLNSLGPQIKEKNIEI 510

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K   +  L + V D+ R+ Q+   ++ NA+ FS     + + A RDN      +K+ G  
Sbjct: 511 KCEIEENLTAKV-DKDRITQVLINLIENAIKFSPVKGVIEIHAFRDNNYAHIIIKDYGPG 569

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           IP+     +F++F   N  + ++ G GLGL+I +S I  HGG + + S     T+ +  +
Sbjct: 570 IPKKDLDKIFDKFYQVNFPKIKKDGAGLGLAICKSIIEAHGGKIWVESELGKGTSFHVLL 629

Query: 789 P 789
           P
Sbjct: 630 P 630


>gi|299149292|ref|ZP_07042352.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512726|gb|EFI36615.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 992

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 136/247 (55%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEE 663

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++T+LL L++DILDL+ ++AG ++  YS I LN +LNE+  S+  K+  
Sbjct: 664 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKS 723

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +++      K      ++ RL Q+   ++SNA+ F+++G        R   +  F V 
Sbjct: 724 EKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEGYIRFGYELR-GKEIYFYVS 782

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T 
Sbjct: 783 DTGCGIPKDKQKSIFGRFVKLNSFEQ--GTGLGLSICQTLVEHMGGTIGVDSEEGKGSTF 840

Query: 785 NCRIPSK 791
              +P K
Sbjct: 841 WFTLPYK 847


>gi|160885842|ref|ZP_02066845.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
 gi|156108655|gb|EDO10400.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
          Length = 992

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 136/247 (55%), Gaps = 6/247 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEE 663

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++T+LL L++DILDL+ ++AG ++  YS I LN +LNE+  S+  K+  
Sbjct: 664 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKS 723

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +++      K      ++ RL Q+   ++SNA+ F+++G        R   +  F V 
Sbjct: 724 EKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEGYIRFGYELR-GKEIYFYVS 782

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T 
Sbjct: 783 DTGCGIPKDKQKSIFGRFVKLNSFEQ--GTGLGLSICQTLVEHMGGTIGVDSEEGKGSTF 840

Query: 785 NCRIPSK 791
              +P K
Sbjct: 841 WFTLPYK 847


>gi|218246423|ref|YP_002371794.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
 gi|218166901|gb|ACK65638.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
          Length = 442

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  +N+ L K  + K+ ++ H+++ELR+PLT I+GF  +L+    G LN KQ QY+  
Sbjct: 198 KDLESENQRLHKTSQNKSDYLSHINHELRTPLTGILGFAKMLREELYGPLNEKQKQYING 257

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LL LVND LDL+ ++A   ++   TI + D+       + +K  E  I + +I
Sbjct: 258 IAVSGEHLLALVNDFLDLSKIEAEREEIFLETIAVEDICLSAISIVDSKAKEQGINL-II 316

Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             G+   F   D++R+ QI   +LSNA+ F+ KGS V L    D     F + + G  I 
Sbjct: 317 EIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS-VTLAVKSDREMLTFCIIDTGIGIK 375

Query: 732 EDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +D  K +F  F    +H  ++ +G GLGL++      LHGG ++++S     +     IP
Sbjct: 376 QDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKLAQLHGGDLTLTSEMGKGSCFTLHIP 435

Query: 790 SK 791
            K
Sbjct: 436 IK 437


>gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding
           domain (C-term) [Bradyrhizobium sp. ORS278]
          Length = 774

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 189/405 (46%), Gaps = 49/405 (12%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT- 478
           TV+ DL  +         + I+ +SE   ++  + R+ L N  F+ L K  ++ ++PGT 
Sbjct: 370 TVEADLRLR---------DAIETISEAFVLWDSNNRLVLCNSHFQKLHKLPDSAVTPGTS 420

Query: 479 -----HIRNIAATCSRYYN---ESDGWDLFAAIITSFDD-------ERKSLQGTLELLS- 522
                 +  +    +R ++   ++ G   F A     DD       ER++  G    +  
Sbjct: 421 YETVIEVGKMPEIRTRLHDNSQQAQGGRTFEA---QLDDGSWLHISERRTKDGGYVSVGT 477

Query: 523 ---------------DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                          D  L  ++I L  +Q+ L    +  +  AE+   EK  A  +A++
Sbjct: 478 DITRIKEHEQKLVDNDLRLRATVIDLQRSQSALERQAIELADLAEKYSQEKTRA-EEANQ 536

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVND 626
            K+ F+ ++S+ELR+PL  IIGF++++ +   GSL S++ Q Y   I  S   LL ++ND
Sbjct: 537 TKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVIND 596

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ ++AG MKL+   + L   L E  + ++ +  + ++ +    +G +   +ADR+ 
Sbjct: 597 ILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKSLVLDADIEGNI-PVIADRRA 655

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
             QI   +LSNA+ F+ +G  V +++       +  + + G  IP      +   F  V 
Sbjct: 656 TKQIMVNLLSNAVKFTPEGGRVTMRSRVFEDKVVLIIADTGIGIPAQSLARLGRPFEQVE 715

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +       G GLGL+I  S   LHGG + + S  E  T +   +P
Sbjct: 716 SQMTKTYHGSGLGLAIARSLAQLHGGSMRLRSRLEHGTVVRVTLP 760


>gi|17229180|ref|NP_485728.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17135508|dbj|BAB78054.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 676

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 132/252 (52%), Gaps = 11/252 (4%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           E+ + E+  ALR        A  +++ F+  +S+EL +PLT +IG +  L    LG L+ 
Sbjct: 422 EQRVIERTMALRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQ 481

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-- 662
           +Q  Y++ I  S   LL+++NDILDL+ ++AG   LN +   L  +     +S+  K   
Sbjct: 482 RQRDYLQTIHDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLVKIAENTIESLLEKALS 541

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N+++ +  D +   F AD  R+ QI   +L+NA+ F+ +G  V L+   +    IF 
Sbjct: 542 EQVNLKLDLQIDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRIWVEEDTSIFQ 601

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IPE+    +F +F  +   +R +  G GLGL++ +  + LH G + + S+   
Sbjct: 602 VEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTVGI 661

Query: 781 VTTINCRIPSKE 792
            +     IP +E
Sbjct: 662 GSIFTVWIPYQE 673


>gi|257062029|ref|YP_003139917.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256592195|gb|ACV03082.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 851

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R  + L  KN  L + + +K+ F+  +S+EL+SPLT ++G + LL   K+G LN
Sbjct: 327 DVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLGEQKVGELN 386

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q  Y E I  S   L+ LVND+LDL  ++ G +KL++  + + ++      SI  K  
Sbjct: 387 TRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICERAYHSIIEKYQ 446

Query: 664 ENN---IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                 + I +  +  L   +AD  RL Q+   +L NAM F+     V ++ +R      
Sbjct: 447 SKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVGIRVSRWENWIA 506

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSS 777
           F+V + G  IPE+    +F +F  + N    +  G GLGL + +     HGG +S IS  
Sbjct: 507 FTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARAHGGDISFISKE 566

Query: 778 DEG 780
            +G
Sbjct: 567 GQG 569


>gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 514

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 163/369 (44%), Gaps = 31/369 (8%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY------Y 491
           E ++   +G  VF  D  + L N  F  +     + + PGT    + A   RY      Y
Sbjct: 17  EAVEEFGQGFTVFDRDLNLILCNNRFLEMLDFPPSLIHPGT----VFADFMRYNAMRGEY 72

Query: 492 NESDGWDLFAAIITSFDD------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              D   L A  +    +      ER+   GT       V+E    PLP    + T+ ++
Sbjct: 73  GPGDVEALVAERVERARNFAPHCFERERPDGT-------VVEVRGTPLPGGGFVTTYTDI 125

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD  RAER L    +   +   +K +F+  +S+E+R+P+  ++G   LL  S    L   
Sbjct: 126 TDRKRAERMLIHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLLTGS---PLTPD 182

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  ++E   +S+  LL ++NDILD + ++AG MKL  +   L+ LL E+   +     + 
Sbjct: 183 QRDHLETAQSSARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAARDK 242

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFS 722
            + + + I+D        D  RL Q+ + ++ NA+ F+ KG   +       D+    F 
Sbjct: 243 GLTLSLRIADTVPRYQAGDPTRLRQVLTNLMGNAVKFTEKGDVAVSVEPEESDSSRLRFE 302

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I      ++F+ FV       RR  G GLGLSI +  + + GG +   S    
Sbjct: 303 VADTGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSIPGE 362

Query: 781 VTTINCRIP 789
            TT +  +P
Sbjct: 363 GTTFHFTLP 371


>gi|295699600|ref|YP_003607493.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295438813|gb|ADG17982.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 1193

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 131/239 (54%), Gaps = 13/239 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +D +RA+  L    E L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +
Sbjct: 472 SDLLRAQNDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRSGNLTDE 531

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN---DLLNEVKQSIATKM 662
           Q +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ +      L+E+ + IA   
Sbjct: 532 QVRYAETIHASNSDLLVLINDILDLSKVEAGQLTVEPETVSIEATLQSLDEMFRPIAATK 591

Query: 663 HENNIRIKVISD---GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           H     ++V  D   G   +FV D QRL QI   +LSNA+ F+  G   +  A  ++   
Sbjct: 592 H-----LRVAFDKLPGTPDTFVTDGQRLTQILRNLLSNAVKFTEHGEVTLEVAKVEDNVL 646

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F V+++G  IP D    +F+ F     +   Q  G GLGLSI   F  L GG ++++S
Sbjct: 647 RFDVRDSGIGIPADKLDMIFDAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVAS 705


>gi|166365913|ref|YP_001658186.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
 gi|166088286|dbj|BAG02994.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
          Length = 795

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 9/269 (3%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y +I   +   +L   ++T+  +  + L  KN  L   + +K+ F+  VS+E +SPLT +
Sbjct: 250 YPLIEKTSGLWLLLATDITEQQQYCQELAVKNADLVHLNRLKDEFLACVSHEFKSPLTAV 309

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG ++LL+  K+G LN +QS+Y + I  S   L+ LVND+LDL  ++ G +KL ++ + +
Sbjct: 310 IGLSNLLREQKIGELNPRQSKYADLIYRSGRQLMALVNDLLDLTRLETGQLKLTFTRVKI 369

Query: 648 NDLLNEVKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + L   V   I  K  +      + R+ +  +  L   +AD  RL Q+   +L NA+ F+
Sbjct: 370 DRLCQRVYDIIVDKYPQRLDLPGSYRLDI--ESGLDYALADEARLQQMLVNLLDNAVKFT 427

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
             G    +K  R      F+V + G  IPE+    +F +F  + +    Q  G GLGL +
Sbjct: 428 IDGGNFGIKVNRWENWLAFTVWDTGIGIPEESQHLIFQKFQQLESPFTRQFEGAGLGLLL 487

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +     HGG +S  S D   +     +P
Sbjct: 488 SQKLARCHGGDLSFVSKDREGSQFTLLLP 516


>gi|153864037|ref|ZP_01997058.1| signal transduction histidine kinase [Beggiatoa sp. SS]
 gi|152146467|gb|EDN72941.1| signal transduction histidine kinase [Beggiatoa sp. SS]
          Length = 612

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 20/265 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  +  +A  A+  K + L  A + K+ F+ ++S+ELR+PL +++    LL  +K G+LN
Sbjct: 32  NQAEMEKARAAIEFKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNLN 91

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ  Y + I ++ + LL L+NDILDL+ V+AG M++N   + L+DLL  ++Q  +    
Sbjct: 92  EKQVSYAQTIQSAGSDLLTLINDILDLSKVEAGKMEVNIEALSLSDLLEMLEQKFSPLAS 151

Query: 664 ENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------------- 709
           E  +   K ++D        D QRL QI + +LSNA  F+S G  V+             
Sbjct: 152 EKGLVFEKRLADDLPPFLQTDGQRLKQILNNLLSNAFKFTSLGKIVLSIQRVTNIEDESY 211

Query: 710 ---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
                 AR+N     SV + G  IP+D  + +F  F        RR  G GLGLSI    
Sbjct: 212 QLGKMEARENL-IAISVIDTGIGIPKDKQQLIFEAFQQVDGTTSRRYGGTGLGLSISRQL 270

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
             L GG +++ S +   TT    +P
Sbjct: 271 ARLLGGEITLHSEEGSGTTFTLYLP 295


>gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 891

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 207/471 (43%), Gaps = 63/471 (13%)

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           EL   D+  +A++   D++   +  A            K+     Y+S   HK+   L  
Sbjct: 421 ELLGADILIMASSEEQDKIKRHMELA------------KQGETQTYESEFIHKEGERLFI 468

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
             T   I       G   + EN+T   +   +   L       ++ +SEG+     +G +
Sbjct: 469 KMTNIPIFVQEEIVGCYGIIENVTPLKNYIAQIEKLSNEHSLILNAVSEGIVGLSTEGHV 528

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS-LQ 515
           +  NPA   ++     +   G  I  I     R+ +E         I + F DE+ S LQ
Sbjct: 529 RFMNPAAVEMFGVGSAKPLHGACIDMI-----RHADE---------IGSHFPDEQSSILQ 574

Query: 516 GTLELLSDSVLE--------------YSIIPLPN----AQTMLTFVNVTDSVRAERALTE 557
                 S  V E              Y I PL +       ++ FV+ T+    E+ +  
Sbjct: 575 AIRSGASYQVEEAVFWKKGGSSFLASYRISPLMDNGERKGAVMVFVDRTN----EKEIIR 630

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E+  +AD  K+ F+  +S+ELR+P+  IIG   LL  ++   L+ +Q  Y++ I++SS
Sbjct: 631 AKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTE---LDEEQRSYIDIITSSS 687

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ ++N+ILDL+ ++AG M L + + VL++++  V      +  E  I +K   D ++
Sbjct: 688 GALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMMQAMEKGIELKWHVDQEM 747

Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFI-FSVKNNGSSI 730
            G  V D  R+ Q+   ++SNA+ F+ +G   I       +   N   I FSV + G  I
Sbjct: 748 PGMLVGDHVRIRQVLVNLVSNAIKFTERGRVNIFVERKAYSRHKNRCLIEFSVTDTGIGI 807

Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778
           P D    +F  F S  H    R   G GLGLSI ++ + L GG + + S +
Sbjct: 808 PADRQHLLFQPF-SQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDSDE 857


>gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1162

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 138/242 (57%), Gaps = 8/242 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            ++++D  +AE  L +  EA   A++ K+ F+ ++S+ELR+PL +I+GFT L+  S   +
Sbjct: 675 LIDISDRKQAELELRQAKEAAEAANQAKSVFLANMSHELRTPLNSILGFTQLM--SYENN 732

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L S   + ++ I+ S   LL+L+NDILDL+ +++G M LN S   L +LL  +++ +  K
Sbjct: 733 LTSSLQERLQIINRSGRHLLDLINDILDLSKIESGRMTLNPSDFDLINLLTSIEEMLQVK 792

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDN 716
           +   ++++ V  + +L +FV  D ++L Q+   +LSNA+ F+ +GS  +   A    + +
Sbjct: 793 VQSKSLQLIVERESELPNFVHTDEKKLYQVLVNLLSNALKFTQQGSITLRVRAEQKEKHS 852

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               F V++ G  I       +F  FV + A     +G GLGL+I +  + L GG + + 
Sbjct: 853 CRLCFEVEDTGVGIAPTEIDKLFKVFVQAQAGNNLSQGTGLGLAISQKLVQLMGGQIQVQ 912

Query: 776 SS 777
           S+
Sbjct: 913 ST 914


>gi|298485838|ref|ZP_07003916.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159662|gb|EFI00705.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 576

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G++ 
Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGNMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----AR---- 714
              I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L       AR    
Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFARTGVI 470

Query: 715 -----------DNGDF----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
                       +GD+      SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 EGDWPAHTFPLPSGDYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549


>gi|219847901|ref|YP_002462334.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542160|gb|ACL23898.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 725

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 188/391 (48%), Gaps = 68/391 (17%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  QV  ET Y+      G+    L  G+A+   +GR+  +NPA+  +W+  E       
Sbjct: 346 MAYQVAYETSYHL-----GQVFSSLPIGLALLDLNGRVIRANPAWHQVWRLPEQ------ 394

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDE----------RKSLQGTLEL---LSDSV 525
                    S +Y    G DL   ++T   D           ++S     E+   L    
Sbjct: 395 ------PQRSSFYV---GIDLVEHLLTRLSDPFRLSEFCDLGQRSPDQVFEINLQLRQPY 445

Query: 526 LEYSIIPLPNAQTMLTFVN----VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            E  ++ +P   +          V+D  R            R++D +K+ F+  VS+ELR
Sbjct: 446 QELHVLSVPTRDSHHQLTGRLWVVSDRTRE-----------RESDRLKDEFIGIVSHELR 494

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PLT+I+G+T++L   +   L+S+ Q +++  +S  +  L  +V D+LD++ ++AG++KL
Sbjct: 495 TPLTSILGYTEILLNRQ--DLDSESQREFLLTVSNEADRLHKMVKDLLDVSRLEAGVVKL 552

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N   + L  ++ E+   + T++ ++ + I + +   L    ADR ++ QI   +LSNA+ 
Sbjct: 553 NRWAVGLWQVIEELTLQLHTQLVQHKLLIDMRT--PLPPVFADRDKVKQIIVNLLSNAIK 610

Query: 701 FSSKGSTVI----------LKAARDNGDFIF-SVKNNGSSI-PEDMCKSVFNRF--VSNA 746
           +S +G+ +           L A    G ++  +V++ G  I PED  + +F RF  V N+
Sbjct: 611 YSPEGTEIQLIVRQAEASDLPAGHPAGQWMLITVQDQGIGIEPEDQAR-LFERFHRVDNS 669

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  Q+ GVGLGL I    + LHGG + + S+
Sbjct: 670 NTRQKSGVGLGLYITRLLVELHGGRIWVQST 700


>gi|86750625|ref|YP_487121.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
 gi|86573653|gb|ABD08210.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
          Length = 627

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 3/258 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL- 593
            A  +    +VTD  + E+AL E      +AD  K+ F+  +S+ELR+PL  +IGF+D+ 
Sbjct: 339 EADVVAVMRDVTDRKQQEQALEEARAEAGRADATKSRFLATMSHELRTPLNAVIGFSDMI 398

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L   +L     ++ +Y + I+ S   LL++VN ILD++ +++G  ++          L  
Sbjct: 399 LHEDELMLAPERRKEYAQLINDSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLN 458

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               +A K  EN I +   +   L   V D +   QI   ++SNA+ F+ +G TV + A 
Sbjct: 459 CCNLLALKARENGIDLVTRAPENLPEIVGDPRAFKQILLNLVSNAIKFTERGGTVSVDAM 518

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            +    +  V + G  I  +  K + + F       QRR  G GLGLSIV+S + +HGG 
Sbjct: 519 VEGARLVLRVSDTGVGIAAEDLKRIGDPFFQAGTTYQRRHEGTGLGLSIVKSLVGMHGGD 578

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S  +  TT+   +P
Sbjct: 579 IEVKSEVDRGTTVTVSLP 596


>gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY]
 gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY]
          Length = 1137

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 126/230 (54%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+ AL  K   L +A + K+ F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y 
Sbjct: 442 AQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQQNLTAEQVRYA 501

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  + T LLNL+NDILDL+ ++AG   +    + +  ++  V + +  +  +  ++  
Sbjct: 502 QTIHNAGTDLLNLINDILDLSKIEAGQTSVEIGQVTVAKVVAGVMEPLRAQAQDKGLQFN 561

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + +  + +F+ +D QRL QI   +LSNA+ F+++G   +   A DN    F+V++ G  
Sbjct: 562 AVVEPGVPAFITSDAQRLAQILKNLLSNALKFTARGEVTLRVFAGDNDTLCFAVRDTGIG 621

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I  D  + +F+ F        R+  G GLGLSI      L GG +++ S+
Sbjct: 622 IAPDQQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAVQSA 671


>gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 456

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 137/251 (54%), Gaps = 4/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  +AE A+ E       A+  K+ F+ ++S+ELR+PL +IIGF+D+L     G LN
Sbjct: 201 DITERKKAEEAILEAKIEAESANRAKSEFLANMSHELRTPLNSIIGFSDVLYNESHGPLN 260

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y   +  +   LL+++NDIL ++ ++ G M+L+ +  +++D ++EV+  +     
Sbjct: 261 EYQKKYTSNVLRNGKHLLDIINDILSISNIETGTMELHINEFIVSDAIDEVESLMILIAS 320

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E +I +    D  + +   D  +  QI   ++ NA+ F+ +G +V +     +     SV
Sbjct: 321 EKDIDLTCNIDIGMPTIKTDMIKFKQILYNLVHNAIKFTDQGGSVTIGGKISDDLVHISV 380

Query: 724 KNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           K++G  + PED  K +FN F        R+  G GLGL++V+ F+ +HGG + + S    
Sbjct: 381 KDSGIGVSPEDQDK-LFNPFFQLDSSNARKYGGTGLGLALVKKFVEMHGGEIWVESEVGK 439

Query: 781 VTTINCRIPSK 791
            +T    IP+K
Sbjct: 440 GSTFTFIIPTK 450


>gi|162451780|ref|YP_001614147.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161162362|emb|CAN93667.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 1171

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 5/252 (1%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F+   +  RA   L   NE L + DE+K  F  +VS+ELR+PLT ++   D L TS  G 
Sbjct: 196 FLRAQEIQRANEQLRVANEQLSRLDELKTRFFSNVSHELRTPLTLMLCPIDELLTSAPGG 255

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +Q + VE    ++  LL LVN +LD A ++A  M+++Y  + L+ L  EV  +    
Sbjct: 256 LTDRQRELVELARRNARRLLKLVNTLLDFARIEAARMQVSYEALDLSALTAEVVSAFRAA 315

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
           +    +R+ V           DR+   +I   ++SNA  F+ +G   I  A R  GD + 
Sbjct: 316 VERAGLRLVVDCPPLPERVYVDREMWEKIVLNLVSNAFKFTLEGEIGI--ALRWAGDHVL 373

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G+ IP D    +F+RF  +  AH     G G+GL++V   +  H G V  +S  
Sbjct: 374 LEVRDTGTGIPADELPRIFDRFHRIQGAHGRSHEGSGIGLALVRELVRFHMGEVHATSEV 433

Query: 779 EGVTTINCRIPS 790
              +T   RIP+
Sbjct: 434 GRGSTFTVRIPA 445



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 18/252 (7%)

Query: 536 AQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           A   L FV    ++T+  R E AL +       AD  K+ F+  + +ELR+P+  I    
Sbjct: 745 AGAFLGFVGSSLDITERKRVEDALAD-------ADRRKDEFLAMLGHELRNPMAPICVAV 797

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL+    G       Q++E I+  +  L+ LV+D+LD++ +  G ++L    I +   +
Sbjct: 798 ELLRRRSHGG---PPDQHIEVIARQTRTLMRLVDDLLDVSRITRGKIELRKERIDVKAAV 854

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
               +S   ++     +I+++        + D  RL QI   +L+NA  ++  G  + + 
Sbjct: 855 ARAVESTREQIEARRHQIRLVLPAAAVQVLGDDVRLEQILVNLLTNACKYTDPGGHIGVT 914

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768
             +  G     V+++G  I  ++   VF  F   A R   R   G+G+GL+IV   + LH
Sbjct: 915 VEQRGGQVELRVRDDGIGISREVLPHVFELF-HQADRSLDRAPGGLGIGLTIVRDLVALH 973

Query: 769 GGHVSISSSDEG 780
           GG +  +S   G
Sbjct: 974 GGSIEATSPGPG 985


>gi|148658529|ref|YP_001278734.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148570639|gb|ABQ92784.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 2153

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 23/294 (7%)

Query: 512  KSLQGTLELLSDS------VLEYSIIPLPNAQTMLTFVN-------VTDSVRAERALTEK 558
            + LQ  L+ L+++      VLE   +P P    ML F         +  SV     +T +
Sbjct: 1849 EGLQQGLQALTETPKNHNRVLE---LPEPTQSIMLNFAPWVGPRNAIYGSVIVLHDITRE 1905

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             EA    D  K  F+  VS+ELR+PLT+I G+ DL+     G LN +Q + +  +  ++ 
Sbjct: 1906 VEA----DRAKRDFISSVSHELRTPLTSIKGYVDLMLLGANGPLNEEQKKSLGVVKNNAN 1961

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L++L+NDIL++  +D+  ++L +  +V+ D+  +V+Q++  ++    +           
Sbjct: 1962 RLMDLINDILEIGRIDSDKIQLTFEKVVIGDIFRDVEQTLRAEIKRKRLSFTFDVAADTP 2021

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
               AD++RL QI   + SNA+ ++     V L+A  +    +   V +NG  I  +  + 
Sbjct: 2022 PVFADKRRLTQIVLNLASNAVKYTYPEGIVKLRAGLNPAGLLQVDVIDNGVGISPEQQQH 2081

Query: 738  VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF    N  R +  G GLGLSI +SF+ LHGG + + S     +T +  IP
Sbjct: 2082 LFRRFYRADNPLRDEAGGTGLGLSIAKSFVELHGGQMWVESDLGKGSTFSFIIP 2135


>gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [marine bacterium
           HP15]
          Length = 902

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 38/283 (13%)

Query: 545 VTDSVRAERALTEKNEALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGF 590
           V + +R+E AL    + LR A                 K+ F+ ++S+E+R+P+  +IG+
Sbjct: 515 VDERIRSENALRRSEDELRAAKLEAERLAREAEAASLAKSEFLANMSHEIRTPMNAVIGY 574

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +DLL  S     + +Q  Y++ I A S  LL L+NDILDL+ ++AG M+L+YS + +  L
Sbjct: 575 SDLLSNS---VTDPQQRNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLDYSAVSVRRL 631

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L++V+     +  E  I ++V  D ++ G+ + D  RL Q+   ++ NA+ F+  G   +
Sbjct: 632 LDDVRHIFDLRAREQGITLEVSVDSRMPGAMMLDETRLRQVLFNLVGNAIKFTHDGGVTV 691

Query: 710 LKAA------------------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
              A                  R     I +V ++G  IP D  + +F+ F     +  R
Sbjct: 692 RATAKPLKKRSAEAEQNPEAPERQYYKLIVTVSDSGIGIPPDQVERIFDAFEQQEGQNTR 751

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           R  G GLGL+I      + GG + + S     +     +P  E
Sbjct: 752 RYGGTGLGLAISRKLARMMGGELEVESEQGSGSVFTVTLPRVE 794


>gi|301312439|ref|ZP_07218355.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300829622|gb|EFK60276.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 1045

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 133/234 (56%), Gaps = 5/234 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  + E  L    +   +++++K++F+ ++S+E+R+PL  I+GF+++L ++    L
Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 714

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             K+ ++ + I  ++++LL L+NDILDL+ ++AG ++  Y  + +N +L +++QS   K 
Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +++I      +      DR RL Q+   +L+NAM F+  GS +     RD+    F 
Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLRDDNTLWFY 833

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IPE+  K +F RFV      Q  G GLGLSI E  +    G + + S
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 885


>gi|83311645|ref|YP_421909.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946486|dbj|BAE51350.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 847

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 134/254 (52%), Gaps = 9/254 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            + + +RAER L    E    A+  K  F+ +VS+ELR+PL  +IGF++++     G L 
Sbjct: 583 EIAEHIRAERELVAAKEQADLANRAKTEFLANVSHELRTPLNAVIGFSEVMAAEMFGPLG 642

Query: 604 SKQSQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           S  ++YV Y++   AS   LL ++NDILD+A ++AG M+ +   +   +++    + + +
Sbjct: 643 S--ARYVGYVNDILASGRHLLAVINDILDIAKIEAGQMEFDMELVQPAEVVAAAIRIVES 700

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +     + +       + +  ADR+RLLQI   +LSN++ F+ +G +V +      GD +
Sbjct: 701 RADAGGLVLGSHIAEDVPALKADRRRLLQILVNLLSNSVKFTPEGGSVEVT-VEVLGDMV 759

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F+V + G  + +D        F        RR  G GLGL +V +F+ LHGGH+ I S 
Sbjct: 760 GFTVSDTGIGMSDDEVVVAMLPFRQVDGSLSRRYDGTGLGLPLVRAFVELHGGHLDIVSR 819

Query: 778 DEGVTTINCRIPSK 791
               T +  R+P +
Sbjct: 820 KGEGTQVTVRLPQE 833


>gi|330963166|gb|EGH63426.1| two-component sensor/regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 576

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 141/279 (50%), Gaps = 30/279 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  SS  LL+L+NDILDL+ V+AG+M L    + L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSSQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------- 714
              I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +         
Sbjct: 411 LQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGIL 470

Query: 715 -----------DNGDF----IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
                        GD+      SV + G  I +     +F  F  + ++   +  G GLG
Sbjct: 471 GGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLG 530

Query: 758 LSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792
           L++V+    LHGG V+++S  D G   V  +  R P+ E
Sbjct: 531 LAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRPPATE 569


>gi|170746662|ref|YP_001752922.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653184|gb|ACB22239.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 974

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 3/250 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V +  +AE +L +  EA  +A   K+SF+ ++S+ELR+PL  IIGFT L+       L 
Sbjct: 453 RVIERKQAEESLRQAKEAAEEASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKDVLP 512

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ + +E I ASS  LL+L+N ILDLA V+AG M++  S   L  +L+   +++   + 
Sbjct: 513 VKQFENLEKILASSEHLLSLINSILDLAKVEAGRMEVKPSDFALEPVLDLCLRTVEPLVK 572

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +R+             D ++L QI   +LSNA+ F+  GS  +   + D G   F+V
Sbjct: 573 NEGVRLVRDVRDPPPMLRTDEEKLRQILINLLSNAIKFTEAGSVTLRVRSVDEG-IEFAV 631

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP     ++F  F  V N+      G GLGL+I      L GG + + S +   
Sbjct: 632 MDTGIGIPAGALSAIFEEFHQVDNSATRSHSGTGLGLAISHRLARLLGGRIDVESREGEG 691

Query: 782 TTINCRIPSK 791
           +T    IP +
Sbjct: 692 STFTLTIPPR 701


>gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea
           phototrophica DFL-43]
 gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea
           phototrophica DFL-43]
          Length = 1337

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 149/667 (22%), Positives = 289/667 (43%), Gaps = 73/667 (10%)

Query: 173 GIYSELAETTLKCKKLSNHIS---VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           G+  ++ E   +   L  H +   +F+ + D +    + +D+    ++ N +++K T   
Sbjct: 343 GLRIDVTELKQREALLETHAAQNELFRAILDEMPVSSFVKDEDLRYVYVNRAHRKLT--- 399

Query: 230 GIVFQKAIGESR-KLFKEEIKK-RMISSSALEKN-FCETVSTLEHGNNKSYKIVRVLNSF 286
           G+  +  +G+   ++F ++ +  R + +S +  N   E    L   + +  +++     F
Sbjct: 400 GLTPEDMLGKDDFRIFGDQGQALRDVDTSVMSGNGLVECEIELNATDGRPLQLIDRKVPF 459

Query: 287 GEA-------GIAIDVSK------EITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYL 328
            +        G  IDVS+      E+    +L   +      IL  + + + + D+N  +
Sbjct: 460 TDPSGQRFLLGTTIDVSERKRREEEVFEARRLAEIHRDDLESILETMHMGVIVLDKNLDV 519

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN--KLPEQLNWKTWKENIFSVYKSSE 386
           +  N +F  +W +D     TN S  E++E  R  N   +P+  ++  + E   S      
Sbjct: 520 KLINSAFYRIWNVDQDRDLTNASFKEVIELNRYNNIYDVPDN-DFDKYIETRLSEISGGF 578

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                +   +G+TL   V S   G  +  + ++T ++        L + +GE  + +   
Sbjct: 579 AAPREFSRADGKTLIYSVRSLSEGKRMVTYFDVT-ELKQREHERDLARAEGERANEILRD 637

Query: 447 VAVFGPDG-------RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY--YNESDGW 497
            A     G       RI+ SN AF  +    +  + PG           RY  Y E+ G 
Sbjct: 638 AASAMAQGLLVVENNRIQFSNKAFCEILDLPQELVKPGE-------LADRYLDYCEARG- 689

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEY-----------SIIPLPNAQTMLTFVNVT 546
           D       S  + R+ ++ T+E      +E            + +   NA  + TF ++T
Sbjct: 690 DFGEGEKAS--ESREKIRRTIENGKPYAVERKSAKNRWLKVDAKVGSSNA-IIATFSDIT 746

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            + + E  L +       AD  K+ F+ ++S+E+R+P+  ++G  +LL  ++   L+++Q
Sbjct: 747 ATKQREAELHDLLGKAETADRAKSEFLANMSHEIRTPMNGVLGMAELLSRTE---LDTRQ 803

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             + + I  S T LL ++NDILD + +DAG + L      L + + +V   I+++  E +
Sbjct: 804 RTFADIIVKSGTALLTIINDILDFSKIDAGQLTLESQPFDLREAIEDVATLISSRAAEKD 863

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIF 721
           I + V  D  L    V D  R+ Q+ + ++ NA+ F+  G  +I      A+  + D   
Sbjct: 864 IELIVRIDPALPDCLVGDVGRIRQVMTNLVGNAIKFTETGHVLIEVTGSPASEGSVDLTL 923

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  IP +   +VF++F        RR  G GLGL+I    + L  G +S  S+  
Sbjct: 924 RVHDTGIGIPPEKLDAVFDKFSQVDTSSTRRHEGTGLGLAITSRLVALMDGTISAEST-P 982

Query: 780 GVTTINC 786
           G  ++ C
Sbjct: 983 GEGSVFC 989


>gi|320322879|gb|EFW78970.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329812|gb|EFW85800.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330874310|gb|EGH08459.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330890506|gb|EGH23167.1| two-component sensor/regulator [Pseudomonas syringae pv. mori str.
           301020]
          Length = 576

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 132/260 (50%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
              I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L        +A   
Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAGVI 470

Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
            GD+                  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 EGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549


>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
 gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
          Length = 1362

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 13/261 (4%)

Query: 526 LEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E +I P+P     L   F+ ++T   +AE  L +  EA   A   K++F+  +S+E+R+
Sbjct: 643 VELTITPVPQGSGFLFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRT 702

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  +IG T+LL  +    LNS Q +Y+  +  S   LL+++NDILD + ++AG   L  
Sbjct: 703 PMNAVIGMTELLLDT---DLNSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEK 759

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
           +   L + L +  +S+A + H  ++ +    D  +  + V DR RL QI   ++ NA+ F
Sbjct: 760 APFHLRENLGDTMRSLAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKF 819

Query: 702 SSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + +G  V+       +++     F V++ G  IPED  + +F  F        RR  G G
Sbjct: 820 TEEGEIVLDVNYDFQSKNELQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTG 879

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I    I + GG + ++S
Sbjct: 880 LGLAIASRLIEMMGGKIWVNS 900


>gi|328544566|ref|YP_004304675.1| Sensor histidine kinase with a PAS domain [polymorphum gilvum
           SL003B-26A1]
 gi|326414308|gb|ADZ71371.1| Sensor histidine kinase with a PAS domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 588

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 126/247 (51%), Gaps = 12/247 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D++ AER+  E   A R        F+  +  ELR+PL  I+GF DLL+     S +S+ 
Sbjct: 331 DALAAERSAAEATSAAR------TRFLASIGQELRTPLNAILGFADLLRAGSSPSDDSRS 384

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ I  S T LL +V D+LD++ ++AG   L+     L   L   +  +AT+     
Sbjct: 385 RKYIDLIHQSGTHLLQMVEDLLDMSKIEAGRYDLSIEPFDLPQCLETCRHMLATEASGKG 444

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I I    D  LG+F ADR+  +QI   +LSNA+ F + GS ++L A RD      SV+++
Sbjct: 445 IEIVTEVDNGLGAFPADRRACMQIVLSLLSNAVKFGASGSRMVLCARRDRDRVELSVRDS 504

Query: 727 GSSIP----EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           G  I       + +S F     +    +  G GLGLS+V++   L+GG +++ S     T
Sbjct: 505 GPGIAATDLPRLGQSYFR--TRDPALCEAPGTGLGLSVVKALAELYGGAMTVDSLPGTGT 562

Query: 783 TINCRIP 789
            +   +P
Sbjct: 563 CVTVTLP 569


>gi|90420832|ref|ZP_01228737.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334807|gb|EAS48579.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1]
          Length = 782

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 13/254 (5%)

Query: 547 DSVRAERALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           D+ R    LTE N       E    A   K +F+ ++S+ELR+PL  I+GF+++++    
Sbjct: 514 DAERKAVQLTEMNQNYAAEKERAETASSAKTTFLANMSHELRTPLNAILGFSEIMRQGTF 573

Query: 600 GSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           G +   K  +Y E I  S   LL L+NDILD+A ++AG + LN+ T+ L+++  E  + I
Sbjct: 574 GPIGCPKYGEYAEDIHQSGHYLLKLINDILDMAKIEAGRLVLNHETVDLSEIATETGKII 633

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +  +  I +      ++     DR+   QI   +LSNA+ F+  G TV +K  R  GD
Sbjct: 634 EVQADQKAICLDADVPERM-ELTVDRRATKQIVLNLLSNAVKFTDNGGTVKMK-LRTVGD 691

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             + ++ +NG  IP    KS+   F  + N      +G GLGL+I  S + L GG + IS
Sbjct: 692 AALITIADNGMGIPRAALKSLGKPFEQIENELTRTNKGTGLGLAIARSLVALQGGRMRIS 751

Query: 776 SSDEGVTTINCRIP 789
           S     T +  R+P
Sbjct: 752 SQVGEGTIVAIRLP 765


>gi|260171541|ref|ZP_05757953.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 654

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 131/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L   +      + S+Y
Sbjct: 416 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVEN---REEMSEY 472

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 473 ADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTC 532

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +      +   D+ RL+Q+ +  + NA+ F+  G+  +     D+    F V + G  
Sbjct: 533 TFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCG 592

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +   +T    +P
Sbjct: 593 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650

Query: 790 SKE 792
            ++
Sbjct: 651 YRQ 653


>gi|298493114|ref|YP_003723291.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298235032|gb|ADI66168.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1118

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 17/252 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  +  + L  KN  L + + +K+ F+  +S+EL++PLT ++G + LL   +LG LN
Sbjct: 381 DVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGELN 440

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVK---- 655
            +Q++Y   I  S   L++++NDILDL  ++ G M+L  S +    V +  L+EVK    
Sbjct: 441 ERQARYASLIHQSGRHLMSVINDILDLTRMETGQMELTPSPVQIREVCDHALSEVKTLHN 500

Query: 656 -------QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
                   S +   H  + +  +  +  L   VAD  RL Q+   +LSNA  F+     +
Sbjct: 501 QPSKFIHSSRSESKHSQDHQFSLSIEPGLEQIVADELRLRQMLVHLLSNAFKFTETSGEI 560

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
            L+  R  G   F+V + G  IPE     +F +F  + N    Q  G GLGL +  +   
Sbjct: 561 GLRVNRWEGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALAR 620

Query: 767 LHGGHVSISSSD 778
           LHGG VS  S +
Sbjct: 621 LHGGDVSFLSQE 632


>gi|224537735|ref|ZP_03678274.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520658|gb|EEF89763.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 775

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 135/240 (56%), Gaps = 9/240 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++TD    ER L    E   +++ IK++F+ ++S+E+R+PL  I+GF+ +L    
Sbjct: 518 LYTAWDITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAED- 576

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ +Y+  IS ++ ILL L+NDILDL+ ++AG ++  Y+ I +N +L+E++Q  
Sbjct: 577 --VSEEERIEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQ-- 632

Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           A +M + N  + + +   +   +   D++R+ Q+ +  +SNAM F++ GS         +
Sbjct: 633 AARMRQPNANVAICAVMPMPDLLLYTDQRRITQVLNNFISNAMKFTNTGSITFGYEEPKD 692

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G   F V + G+ IP +    +FNRFV       ++G GLGL+I ++ +    G + + S
Sbjct: 693 GYIRFFVTDTGTGIPPEKVADIFNRFVK--LDSFKQGTGLGLAISQNIVKELKGEIGVLS 750


>gi|53712032|ref|YP_098024.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
 gi|52214897|dbj|BAD47490.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
          Length = 389

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 133/250 (53%), Gaps = 5/250 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + +++T     E  LT   E   +A+ +K++ + ++++E+R+PL  I+GF  LL    + 
Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS---II 195

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q +Y+  I +++  LL L+ND++DL+ +++G+M +  S +VL+ L+ E++ +   
Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K   NN+ +    +        DR RL+QI   +L NA+ F++KG+       ++NG   
Sbjct: 256 KAETNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIR 315

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           F V + G  IP D  + +F RFV      Q  G+GLGLS+ +  I    G + + S    
Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 781 VTTINCRIPS 790
            +T    IP+
Sbjct: 374 GSTFWFTIPN 383


>gi|260684807|ref|YP_003216092.1| sensor protein [Clostridium difficile CD196]
 gi|260688465|ref|YP_003219599.1| sensor protein [Clostridium difficile R20291]
 gi|260210970|emb|CBA66243.1| sensor protein [Clostridium difficile CD196]
 gi|260214482|emb|CBE06962.1| sensor protein [Clostridium difficile R20291]
          Length = 391

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 138/234 (58%), Gaps = 7/234 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618
           +A+++A+  KN+ V ++++++R+PLT++IG+  LLK  ++ ++ NS++S+Y E     + 
Sbjct: 160 QAVKEAENKKNNLVMYLAHDIRTPLTSVIGYLSLLK--EIPNMDNSQKSKYTEVALDKAQ 217

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+N++ ++   ++  +K+N+  + L  +L ++K      + E   R  + ++  L 
Sbjct: 218 YLEKLINELFEITRYNSNQIKINFEKVDLYYMLLQLKDEFYPLLSEKGNRAILKANESL- 276

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +  AD ++L ++F+ IL NA+ +S   + +I+ A   +     + +N G +IPE+   ++
Sbjct: 277 TIKADSEKLARVFNNILKNAIAYSYPNTEIIISAVHKDSKVDIAFRNYGQTIPEEQLSAI 336

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F +F  +  A +    G GLGLSI +  INLHGG +++ S DE VTT    +P+
Sbjct: 337 FEKFNRLDEARKSDMGGAGLGLSIAKEIINLHGGDITVQSKDE-VTTFTISLPT 389


>gi|168703357|ref|ZP_02735634.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1156

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 5/258 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L      ++ RA+  L  +   L +A   K+ F+ ++S+ELR+PL + +    LL  
Sbjct: 442 QTQLMEAQRDEATRAKSELQVQARELERASRYKSDFLANMSHELRTPLNSSLILAKLLAD 501

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++ G+L ++Q +Y E I A+   LL L+NDILDL+ ++AG M++    + L  L  ++ +
Sbjct: 502 NRDGNLTAEQVRYAETIRAAGNDLLALINDILDLSKIEAGHMEVRPGPVPLASLAEDLTR 561

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                  E  +   V ++ G       DRQRL Q+   +LSNA+ F+  G  V L+A+  
Sbjct: 562 VFQPIADEKKLGFAVRLAPGCPEGIETDRQRLEQVLKNLLSNALKFTESGE-VALEASAA 620

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            GD I F+V++ G  I E   + VF  F        R+  G GLGLSI      L GG +
Sbjct: 621 PGDRIAFAVRDTGIGIAEHQQQMVFEAFRQADGTTNRKHGGTGLGLSIARELARLLGGDI 680

Query: 773 SISSSDEGVTTINCRIPS 790
            ++S     +T    IP+
Sbjct: 681 HLASEPGRGSTFTVTIPT 698


>gi|255094248|ref|ZP_05323726.1| VanS [Clostridium difficile CIP 107932]
          Length = 296

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 138/234 (58%), Gaps = 7/234 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618
           +A+++A+  KN+ V ++++++R+PLT++IG+  LLK  ++ ++ NS++S+Y E     + 
Sbjct: 65  QAVKEAENKKNNLVMYLAHDIRTPLTSVIGYLSLLK--EIPNMDNSQKSKYTEVALDKAQ 122

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+N++ ++   ++  +K+N+  + L  +L ++K      + E   R  + ++  L 
Sbjct: 123 YLEKLINELFEITRYNSNQIKINFEKVDLYYMLLQLKDEFYPLLSEKGNRAILKANESL- 181

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +  AD ++L ++F+ IL NA+ +S   + +I+ A   +     + +N G +IPE+   ++
Sbjct: 182 TIKADSEKLARVFNNILKNAIAYSYPNTEIIISAVHKDSKVDIAFRNYGQTIPEEQLSAI 241

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F +F  +  A +    G GLGLSI +  INLHGG +++ S DE VTT    +P+
Sbjct: 242 FEKFNRLDEARKSDMGGAGLGLSIAKEIINLHGGDITVQSKDE-VTTFTISLPT 294


>gi|315919855|ref|ZP_07916095.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693730|gb|EFS30565.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 632

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 131/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L   +      + S+Y
Sbjct: 394 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVEN---REEMSEY 450

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 451 ADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTC 510

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +      +   D+ RL+Q+ +  + NA+ F+  G+  +     D+    F V + G  
Sbjct: 511 TFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCG 570

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +   +T    +P
Sbjct: 571 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628

Query: 790 SKE 792
            ++
Sbjct: 629 YRQ 631


>gi|319793620|ref|YP_004155260.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS]
 gi|315596083|gb|ADU37149.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS]
          Length = 1167

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 3/244 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +R L ++ + L++A   K+ F+ ++S+ELR+PL + +    LL  +  G+L  +Q ++
Sbjct: 468 RVQRDLEDRADELQRASRYKSEFLANMSHELRTPLNSALILAKLLGDNPQGNLTLEQVKF 527

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I +S   LL L+NDILD+A V+AG +++    + L  L   ++ + +    + N+  
Sbjct: 528 AESIYSSGNDLLVLINDILDIAKVEAGKLEVVPEDVSLARLAESLESTFSPLAMQKNLSF 587

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++ +  G   S V DRQR+ QI   +LSNA+ F+ KG   ++ +A  +G   F+V ++G 
Sbjct: 588 RLELQPGAPASLVTDRQRVEQILKNLLSNALKFTDKGEVALVVSATADGGAAFAVSDSGI 647

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I     + +F  F        RR  G GLGLSI     +L GG +++ S     +T   
Sbjct: 648 GIDAQQHELIFEAFRQADGTTSRRYGGTGLGLSISRDLTHLLGGTLTVQSEPGKGSTFVL 707

Query: 787 RIPS 790
           ++P+
Sbjct: 708 QLPA 711


>gi|255008850|ref|ZP_05280976.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313146595|ref|ZP_07808788.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
 gi|313135362|gb|EFR52722.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
          Length = 895

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 197/403 (48%), Gaps = 40/403 (9%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VT++    T W F  +++ ++  E++   L ++   T+++L  G+ V       K     
Sbjct: 346 VTTDDGEETFWSFTHDISERIRYESQIKRLNRIMDTTMENLPAGIVV-------KDIEND 398

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD------------- 509
           FR +++  E      ++ R+I+A  +   N+ D + L  A     +D             
Sbjct: 399 FRYIYRNRE------SYNRDISAENAIGMNDFDYYPLEMAQQKRKEDMEIANTGKGMHWI 452

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKAD 566
            E K   G L +L    +   I+   +   ++  +  ++T      R L E  E    +D
Sbjct: 453 MEGKDKNGNLLILDKQKI---IVESEDFSPIIVSIEWDITQLELMRRELMESKEKAETSD 509

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           ++K++F+ ++S+E+R+PL  I+GF+ ++  S+      ++ +Y E + A++  LL L+N+
Sbjct: 510 KLKSAFLANMSHEIRTPLNAIVGFSRIISESENPE---ERKEYYEIVDANNERLLQLINE 566

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ +++GI++  Y  + L+ L  E+  +   +  +  + +K  S  +  S  +D+ R
Sbjct: 567 ILDLSKIESGIVEFTYGPVKLHTLCKEIHDAHVFRCPQ-GVELKFDSPDEALSIHSDKNR 625

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + Q+FS ++ NA  F+++GS V     ++    +F VK+ G  I  +    VF RF    
Sbjct: 626 IFQVFSNLIGNAFKFTTQGS-VSYGYRQEAEKVVFYVKDTGLGIEPEKLGRVFQRFAKLN 684

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  Q  G GLGLSI ++ I   GG +S+SS     TT    +P
Sbjct: 685 NFAQ--GTGLGLSICKTIIERLGGEISVSSEVGTGTTFTFWLP 725


>gi|60680227|ref|YP_210371.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
 gi|60491661|emb|CAH06413.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
          Length = 389

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 133/250 (53%), Gaps = 5/250 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + +++T     E  LT   E   +A+ +K++ + ++++E+R+PL  I+GF  LL    + 
Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS---II 195

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q +Y+  I +++  LL L+ND++DL+ +++G+M +  S +VL+ L+ E++ +   
Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K   NN+ +    +        DR RL+QI   +L NA+ F++KG+       ++NG   
Sbjct: 256 KAETNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIR 315

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           F V + G  IP D  + +F RFV      Q  G+GLGLS+ +  I    G + + S    
Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 781 VTTINCRIPS 790
            +T    IP+
Sbjct: 374 GSTFWFTIPN 383


>gi|254976862|ref|ZP_05273334.1| VanS [Clostridium difficile QCD-66c26]
 gi|255316002|ref|ZP_05357585.1| VanS [Clostridium difficile QCD-76w55]
 gi|255518659|ref|ZP_05386335.1| VanS [Clostridium difficile QCD-97b34]
 gi|255651781|ref|ZP_05398683.1| VanS [Clostridium difficile QCD-37x79]
 gi|306521571|ref|ZP_07407918.1| sensor protein [Clostridium difficile QCD-32g58]
          Length = 371

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 138/234 (58%), Gaps = 7/234 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618
           +A+++A+  KN+ V ++++++R+PLT++IG+  LLK  ++ ++ NS++S+Y E     + 
Sbjct: 140 QAVKEAENKKNNLVMYLAHDIRTPLTSVIGYLSLLK--EIPNMDNSQKSKYTEVALDKAQ 197

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+N++ ++   ++  +K+N+  + L  +L ++K      + E   R  + ++  L 
Sbjct: 198 YLEKLINELFEITRYNSNQIKINFEKVDLYYMLLQLKDEFYPLLSEKGNRAILKANESL- 256

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +  AD ++L ++F+ IL NA+ +S   + +I+ A   +     + +N G +IPE+   ++
Sbjct: 257 TIKADSEKLARVFNNILKNAIAYSYPNTEIIISAVHKDSKVDIAFRNYGQTIPEEQLSAI 316

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F +F  +  A +    G GLGLSI +  INLHGG +++ S DE VTT    +P+
Sbjct: 317 FEKFNRLDEARKSDMGGAGLGLSIAKEIINLHGGDITVQSKDE-VTTFTISLPT 369


>gi|315121866|ref|YP_004062355.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495268|gb|ADR51867.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 498

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 147/263 (55%), Gaps = 13/263 (4%)

Query: 539 MLTFVNVTDSVRAE----RALTEKN-EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           +L+F +  D + AE    ++L++K  +   +A+  K+ F+  +S+ELR+PL  I+GF+++
Sbjct: 214 ILSFQSEKDDLIAELEVAKSLSDKTRQRAEEANLAKSRFLASMSHELRTPLNAILGFSEV 273

Query: 594 LKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +    +G LN++   +Y+  I  S   LLNL+N+ILDL+ ++AG  +L+ S I L D+++
Sbjct: 274 IGLETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIMH 333

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E    +  +  E  I I    D  L S  AD + + Q+   +LSNA+ F+S G  V +K 
Sbjct: 334 ECMIMLQLRAQEKYIEIFQQIDPTLSSVWADEKGMRQVILNLLSNAVKFTSIGGKVRVKV 393

Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLH 768
                 G +I S+K+NG  I E    +V + F   S A +   +GVGLGL IV+S +  H
Sbjct: 394 GWTAGGGQYI-SIKDNGPGISEGEMPTVLSSFGQGSIAIKSAEQGVGLGLPIVQSIMANH 452

Query: 769 GGHVSISSS-DEGVTTINCRIPS 790
           GG   I S   EGV  I   +PS
Sbjct: 453 GGQFRIKSKLQEGVEVIAI-LPS 474


>gi|170741503|ref|YP_001770158.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195777|gb|ACA17724.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 973

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 202/492 (41%), Gaps = 56/492 (11%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS-----NDELL--EFLRSANK 364
           L N+   + + D +  +Q  NR  +EL ++  AF+A  P+     N +L   EF  S   
Sbjct: 335 LENMDQGLMMIDADDRVQVCNRRALELLDLPPAFMARKPTFTAVRNHQLAHNEFAHSDEA 394

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ-- 422
                 ++TW   + +       H      PNG  L +       GG +  + ++T +  
Sbjct: 395 ------FRTW---VATAGLEPREHTYERERPNGTVLEIRTVPLAGGGAVRTYTDITARHG 445

Query: 423 -----VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLS 475
                 + E +Y  L        D++S+ + +   DGR    +P+  ++  +  EE    
Sbjct: 446 AERARRESEARYKVLA-------DNVSDLIVLGHADGRRSYISPSVHAMLGYAVEE---- 494

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------VLEYS 529
               IR       R     D  +  +A   S   ER +      L   +         Y 
Sbjct: 495 -AHRIR------VRDCLHPDDLNRVSAAAASLSRERPTASVVFRLKHKAGHYVWVEAAYK 547

Query: 530 IIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            I   +  T++T + +VT  VR ER L             K  F+ ++S+ELR+PLT ++
Sbjct: 548 RIEDADEVTIVTAIRDVTQRVRQERHLERARVEAEAGARAKAEFLANMSHELRTPLTGML 607

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  DLL      SL+  Q   V     +   LL +VNDILD + ++AG M +      L 
Sbjct: 608 GVHDLLAGD--ASLSDAQRHLVGLAQEAGRSLLAIVNDILDFSKIEAGQMAIESVPFSLR 665

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS- 706
            L+   +  +A    +  +R+    +G     FV D  RL QI   + SNA+ F+ +G  
Sbjct: 666 ALVESCRALVAESAKDKPLRLVTDIEGDAPDRFVGDPTRLRQILLNLASNAVKFTPRGEI 725

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           T+ +  A   G    +V + G  IP D    +F RF        RR  G GLGL I +  
Sbjct: 726 TMRVGFAASTGRVRVAVTDTGIGIPADKLPLLFERFSQADASTTRRYGGTGLGLVICKRL 785

Query: 765 INLHGGHVSISS 776
           + L GG + + S
Sbjct: 786 VELMGGTIGVES 797


>gi|4545094|gb|AAD22391.1|AF064527_1 PPH [Rhodospirillum centenum]
          Length = 884

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 132/243 (54%), Gaps = 4/243 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +R  R + E ++ L  ++E K+ F+ ++S+ELR+PL  IIGF+DL+ +   G+L  +   
Sbjct: 641 LRHLRHVKELSDQLAASNEAKSRFLANMSHELRTPLNAIIGFSDLMMSGMAGTLPPRIQD 700

Query: 609 YVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           YV+ I AS   LL + VND+LDL+ ++AG M+L+  ++    L  E    +  +     +
Sbjct: 701 YVQSIHASGEHLLRMVVNDVLDLSRIEAGRMELSPESLDAGILAAECVGMLLPRAVRGEV 760

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNN 726
            ++V ++  L    AD  RL QI   I+ NA+ F+  G  V ++A A   G  +F+V++ 
Sbjct: 761 LLEVQAESPL-PLTADALRLRQILLNIIGNAVKFTPPGGRVDVRARALAGGGAVFTVRDT 819

Query: 727 GSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  +  +   +    F   A  R    G GLGL I +S ++LH G+++I ++    TT+ 
Sbjct: 820 GPGMTPEEVLTAMEPFRQVAQTRAAVEGTGLGLPIAKSLVDLHAGNLAIETAPGLGTTVT 879

Query: 786 CRI 788
             I
Sbjct: 880 IEI 882


>gi|154251412|ref|YP_001412236.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155362|gb|ABS62579.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 600

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 136/243 (55%), Gaps = 7/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           AE+  +EK  A   A+  K+ F+ ++S+ELR+PL  IIGF++++++   G L S K  +Y
Sbjct: 356 AEKYASEKTRA-EAANRSKSEFLANMSHELRTPLNAIIGFSEIMESGLFGELGSPKYKEY 414

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I AS T LL L+NDILD++ ++AG M L    + L++++ E  + ++ +     + I
Sbjct: 415 AGDIHASGTHLLELINDILDMSKIEAGRMTLETQPLELSEVVEESLRLVSGRAEVAKVHI 474

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
                G L +  AD++ + Q+   +LSNA+ F+  G ++ L+    +G F+  SV++ G 
Sbjct: 475 -ANEMGPLPTVDADKRAVKQVLLNLLSNAVKFTPAGGSIHLR-GETSGRFVTISVEDTGI 532

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP      +   F  V + H    +G GLGL++  S + LHGG + + S++   T ++ 
Sbjct: 533 GIPASALPKIGRPFEQVESQHSKSHKGTGLGLALSRSLVELHGGALVLESTEGVGTKVSF 592

Query: 787 RIP 789
            +P
Sbjct: 593 TLP 595


>gi|255009663|ref|ZP_05281789.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 3_1_12]
 gi|313147448|ref|ZP_07809641.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136215|gb|EFR53575.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1014

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 136/245 (55%), Gaps = 6/245 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 630 ITKRKKMEMELTTAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEE 686

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++T+LL L++DILDL+ ++AG ++  YS + LN ++ E++ ++  K+  
Sbjct: 687 EKREYVNIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNVELNAVMKELESTLQLKIKS 746

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             ++++ +          ++ R+ Q+   +++NA+ F+ KGS       R   +  F V 
Sbjct: 747 EAVKLEFVPPADRCLVHLEKNRVSQLIINLVTNAIKFTEKGSIRFGYELR-GKELYFYVA 805

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  I +D  +S+F RFV      Q  G GLGLSI ++ +N  GGH+ + S     +T 
Sbjct: 806 DTGCGIAKDEQESIFGRFVKLNSFAQ--GTGLGLSICQTLVNHMGGHIGVESEKGKGSTF 863

Query: 785 NCRIP 789
              +P
Sbjct: 864 WFTLP 868


>gi|307945461|ref|ZP_07660797.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
 gi|307771334|gb|EFO30559.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
          Length = 790

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 130/246 (52%), Gaps = 7/246 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           A++   E+N A   A++ K+ F+ ++S+ELR+PL  IIGF+D++     G L + K S Y
Sbjct: 538 ADKYSEERNRA-ENANKAKSEFLANISHELRTPLNAIIGFSDIMNKEMFGPLGTEKYSDY 596

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S T LLN++NDILD++ ++AG M +    +   +   +  + ++T   E +I +
Sbjct: 597 CHDIHNSGTYLLNVINDILDMSKIEAGRMSIETEDLSAKEAAEDAARIMSTAAREKHIDV 656

Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
              + DG      ADR+ L QI   +L+NA+ F+ +  TV LKA ++     F + + G 
Sbjct: 657 TCTVEDGI--QVRADRRALKQILLNLLANAVKFTPEHGTVSLKAHQEKNRICFEISDTGI 714

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I +     +   FV   N      +G GLGL+I  S I +HGG + ISS     T +  
Sbjct: 715 GIADKDIARLAQPFVQVENQFTKTHQGSGLGLAIARSLIEIHGGKLEISSELGEGTHVRF 774

Query: 787 RIPSKE 792
            +PS +
Sbjct: 775 LLPSSD 780


>gi|253569873|ref|ZP_04847282.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840254|gb|EES68336.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 631

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 132/243 (54%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L   +      +  +Y
Sbjct: 393 KAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIED---RKEMREY 449

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILD++ ++AG      S I +N  + E++QS+  ++ +  + +
Sbjct: 450 ADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTL 509

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ S  + NA+ F+  GS  +    +D     F V + G  
Sbjct: 510 TFTERLPECTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCG 569

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + E+ C+ VF RFV   +    +G GLGLSI +  I+  GG + + S +   +T    +P
Sbjct: 570 MSEEQCRHVFERFVK--YNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627

Query: 790 SKE 792
            ++
Sbjct: 628 YQQ 630


>gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 844

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 132/240 (55%), Gaps = 7/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +   A   A+  K+ F+ H+S+ELR+PL  I+GF+ LL      +LN +Q +Y++ I+
Sbjct: 365 LQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLLNHD--STLNEEQQEYIDIIN 422

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+ DILD+A ++AG + L  ++  L+ L+  ++Q    K  +  +++ V  D
Sbjct: 423 RSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFVEID 482

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730
             + +++  D  +L Q+   +LSNA+ F+ +G  ++  + + + +    +F V+++G  I
Sbjct: 483 PSIPAYILTDEGKLRQVLINLLSNAIKFTQRGQIILRVSEKPDPETPYLLFEVEDSGPGI 542

Query: 731 PEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             D    +FN F  +   R  + G GLGL+I   F+++ GG + +S    G T  +  +P
Sbjct: 543 ECDEAPKLFNPFFQTELGRKTQEGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLFHFDLP 602


>gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 844

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 132/240 (55%), Gaps = 7/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +   A   A+  K+ F+ H+S+ELR+PL  I+GF+ LL      +LN +Q +Y++ I+
Sbjct: 365 LQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLLNHD--STLNEEQQEYIDIIN 422

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+ DILD+A ++AG + L  ++  L+ L+  ++Q    K  +  +++ V  D
Sbjct: 423 RSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFVEID 482

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730
             + +++  D  +L Q+   +LSNA+ F+ +G  ++  + + + +    +F V+++G  I
Sbjct: 483 PSIPAYILTDEGKLRQVLINLLSNAIKFTQRGQIILRVSEKPDPETPYLLFEVEDSGPGI 542

Query: 731 PEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             D    +FN F  +   R  + G GLGL+I   F+++ GG + +S    G T  +  +P
Sbjct: 543 ECDEAPKLFNPFFQTELGRKTQEGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLFHFDLP 602


>gi|289623553|ref|ZP_06456507.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649156|ref|ZP_06480499.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867856|gb|EGH02565.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 576

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------ 711
              I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L             
Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLSVRQVSFAQAGVI 470

Query: 712 -----------AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
                       + D   F+  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 EGGWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549


>gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1778

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +++D    E  L + N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ ++    G+L 
Sbjct: 1373 DISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLG 1432

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q Q ++ I  S++ LL L+NDILDLA ++AG MKL+ +   +  L       I  +  
Sbjct: 1433 DRQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAF 1492

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDN 716
            +  I I V     L     D +RL Q+   +L+NA+ F+     + L+          D 
Sbjct: 1493 KKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDK 1552

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                F+V + G  I E+    +F  F  + +A   Q  G GLGLS+V+  + +HGG V++
Sbjct: 1553 SRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNV 1612

Query: 775  SS 776
             S
Sbjct: 1613 IS 1614


>gi|144900521|emb|CAM77385.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 815

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 181/382 (47%), Gaps = 39/382 (10%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           ++++ LE ++  L ++   T D     +A+   DGR + +NPA         +   P   
Sbjct: 450 SLRLALELEHANLRRIFASTKDL----IALVSTDGRFEYANPAL-------VDTFGPVMG 498

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPL--P 534
           +R I              D F   I +  D+  + +G  E +SD      E+SI P+  P
Sbjct: 499 VRTI--------------DYFQPAIANLGDDNTATRG--EWVSDLNGKTYEFSITPVDTP 542

Query: 535 NAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +   +L   ++T   +AE A+ E  EA   ++  K  F+  +S+ELR+PL  IIGF++
Sbjct: 543 HGEMSALLALHDITTRKQAELAMAEAREAAELSNRAKTEFLATMSHELRTPLNAIIGFSE 602

Query: 593 LLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +++   LG + +KQ + Y   I+ S   LL L+NDILD+A ++ G   L  S + +   +
Sbjct: 603 IIENELLGPVETKQYRDYAHDINESGRHLLTLINDILDVARLEVGRFALMESEMDVGQTI 662

Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
               Q +  +     +RI + I DG L   + D +R+ Q  + ILSNA+ F+S    V +
Sbjct: 663 RASVQLVGERAKAAGLRIGEQIPDG-LPWLMGDERRIKQTIANILSNAVKFTSADGRVTV 721

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            A  D       V + G  I  D    +   F        RR  G GLGL +   F+++H
Sbjct: 722 TAKTDENGLDIVVSDTGIGIHADDMTKIMAPFGQAESSLSRRFDGAGLGLPLARRFMDMH 781

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG +SISS+    T +N   P+
Sbjct: 782 GGTLSISSTPGQGTVVNLHFPA 803


>gi|262406077|ref|ZP_06082627.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294648144|ref|ZP_06725687.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806365|ref|ZP_06765209.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|262356952|gb|EEZ06042.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636528|gb|EFF55003.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446433|gb|EFG15056.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 396

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 144/273 (52%), Gaps = 23/273 (8%)

Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568
           +L+ D VL   E  I PL N   +    +++    AE+   ++ + L+ A       D +
Sbjct: 119 DLMLDGVLHHYENRIFPLDNKYLLCMCRDISQQWEAEQTNAQQQKELKAARVKAEESDRL 178

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ L+      +   +++QY E I  +S +LLNL NDIL
Sbjct: 179 KSAFLANMSHEIRTPLNAIVGFSKLIT---FATSTEEKNQYAEIIERNSEMLLNLFNDIL 235

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQR 686
           DL++++A  +K N   I L D+  ++KQ      H+    +K+I D       A  D  R
Sbjct: 236 DLSSLEADSLKFNIRPIKLTDICLQLKQQFC---HKTQNGVKLILDDVDADMYASGDWNR 292

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
           ++QI S +LSNA  F+ KG   I    R+  DF+ F VK++G  IP +   ++F RF   
Sbjct: 293 IIQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKV 350

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
               Q  G GLGL++    +   GG + + S +
Sbjct: 351 NDFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 381


>gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 1131

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/492 (23%), Positives = 220/492 (44%), Gaps = 42/492 (8%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-------AFLATNPSNDELLEFLRSAN 363
           IL +L V + I D +  + + N  F  +WE+ L        F+     N EL  +     
Sbjct: 333 ILRSLPVGVLILDNDHRILYVNDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRY--DGT 390

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           + PE++    +++++F   +  E  +  W             SN R   +  + ++T   
Sbjct: 391 QTPEEI--YDFRKHLFET-EEPEPIELGWAGGKSVIFDSRRISNDR--ILLTYADITAVR 445

Query: 424 DLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + E + +        L ++  +    + +G+AV   DG IK+SN A   + +     L P
Sbjct: 446 EREKEIHEARAALERLGEMMRDATHAMPQGLAVV-QDGIIKMSNEALSDILQIPATYLEP 504

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDD---ERKSLQGTLELLSDSVLEYSIIPL 533
           G     +   C+      D  D    I+  + D    R  +     +  +  +       
Sbjct: 505 GEGWIGMFEFCA---ARGDFHDAAGEILQGWRDNIAARLPISTVFHVGGERWVNMDATVS 561

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +  F +VT+    E  L +       AD  K+ F+ ++S+E+R+P+  ++G  +L
Sbjct: 562 KGQHWVALFTDVTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAEL 621

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +   +L+++Q  +V+ I  S   LL ++NDILD + +DAG MKL  +   + + + +
Sbjct: 622 LAKT---NLDTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVED 678

Query: 654 VKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
           V   +++   E NI + V +   L  + + D  R  QI + ++ NA+ F+ +G   +   
Sbjct: 679 VATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVG 738

Query: 710 -LKAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
              AA   G+ + S++  + G  IP +  +SVF++F        RR  G GLGL+I    
Sbjct: 739 FQPAA--GGEIMASIRIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGL 796

Query: 765 INLHGGHVSISS 776
           ++L GG++++ S
Sbjct: 797 VDLFGGYLNVES 808


>gi|159030650|emb|CAO88320.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 790

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 135/261 (51%), Gaps = 10/261 (3%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y +I   +   +L   ++T+  +  + L  KN  L   + +K+ F+  VS+E +SPLT +
Sbjct: 249 YPLIEKASGLWLLLATDITEQQQYCQELAVKNADLVHLNRLKDEFLACVSHEFKSPLTAV 308

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG + LL+  K+G LN +QS+Y + I  S   L+ LVND+LDL  ++ G ++L  S + +
Sbjct: 309 IGLSSLLREQKIGELNPRQSKYADLIYRSGRQLMALVNDLLDLTRLETGQLQLTLSRVKI 368

Query: 648 NDLLNEVKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + L   V   I  K  +     ++ R+ +  +  L   +AD  RL Q+   +L NA+ F+
Sbjct: 369 DRLCQRVYDIIVDKYPQRLDLPSSYRLDI--ESGLDYVLADEARLQQMLVHLLDNAVKFT 426

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
             G  + +K  R      F+V + G  IPE+    +F +F  + +    Q  G GLGL +
Sbjct: 427 IDGGNLGIKVNRWENWLAFTVWDTGIGIPEESQHLIFQKFQQLESPFTRQFEGAGLGLVL 486

Query: 761 VESFINLHGGHVS-ISSSDEG 780
            +     HGG +S +S + EG
Sbjct: 487 SQKLARCHGGDLSFVSRAQEG 507


>gi|29349762|ref|NP_813265.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341672|gb|AAO79459.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 631

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 132/243 (54%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L   +      +  +Y
Sbjct: 393 KAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIED---RKEMREY 449

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILD++ ++AG      S I +N  + E++QS+  ++ +  + +
Sbjct: 450 ADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTL 509

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ S  + NA+ F+  GS  +    +D     F V + G  
Sbjct: 510 TFTERLPECTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCG 569

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + E+ C+ VF RFV   +    +G GLGLSI +  I+  GG + + S +   +T    +P
Sbjct: 570 MSEEQCRHVFERFVK--YNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627

Query: 790 SKE 792
            ++
Sbjct: 628 YQQ 630


>gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis
            NIES-39]
          Length = 1778

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +++D    E  L + N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ ++    G+L 
Sbjct: 1373 DISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLG 1432

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q Q ++ I  S++ LL L+NDILDLA ++AG MKL+ +   +  L       I  +  
Sbjct: 1433 DRQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAF 1492

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDN 716
            +  I I V     L     D +RL Q+   +L+NA+ F+     + L+          D 
Sbjct: 1493 KKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDK 1552

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                F+V + G  I E+    +F  F  + +A   Q  G GLGLS+V+  + +HGG V++
Sbjct: 1553 SRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNV 1612

Query: 775  SS 776
             S
Sbjct: 1613 IS 1614


>gi|159899975|ref|YP_001546222.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893014|gb|ABX06094.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 958

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 18/236 (7%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D+IK+ FV  VS++L+SPLT I G+  L+    +G++N  Q   ++ +  ++  +  
Sbjct: 729 KELDQIKSRFVSMVSHDLKSPLTAIQGYAQLVADGHMGTVNEMQRDALQAVVRNTGAMTA 788

Query: 623 LVNDILDLATVDAGIMKLNYST---IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L++D+LDL  ++AGI      T   +VL ++++E+K  +  KM + +++ ++     L  
Sbjct: 789 LISDLLDLGKIEAGIGISPQETDLAVVLREVIDELK--LRAKMGQISVQPEIPPSLPL-- 844

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            VAD  R+ Q+F+ ILSNA+ ++  G  V ++A   +      ++++G  IPED    +F
Sbjct: 845 -VADPSRMRQVFTNILSNAIKYTPSGGQVQIRANNGDAKMHVQIQDSGLGIPEDSLPHIF 903

Query: 740 NRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF    +R +R       G GLGL+I +S ++ HGG + + S     TT N  +P
Sbjct: 904 ERF----YRVKRDIDSPIEGTGLGLAITKSIVDEHGGTIEVQSVIGEGTTFNVYLP 955


>gi|301161754|emb|CBW21294.1| putative histidine kinase [Bacteroides fragilis 638R]
          Length = 389

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 133/250 (53%), Gaps = 5/250 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + +++T     E  LT   E   +A+ +K++ + ++++E+R+PL  ++GF  LL    + 
Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAVVGFASLLS---II 195

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q +Y+  I +++  LL L+ND++DL+ +++G+M +  S +VL+ L+ E++ +   
Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K   NN+ +    +        DR RL+QI   +L NA+ F++KG+       ++NG   
Sbjct: 256 KAETNNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIR 315

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           F V + G  IP D  + +F RFV      Q  G+GLGLS+ +  I    G + + S    
Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 781 VTTINCRIPS 790
            +T    IP+
Sbjct: 374 GSTFWFTIPN 383


>gi|237712910|ref|ZP_04543391.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409649|ref|ZP_06086189.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647129|ref|ZP_06724733.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807884|ref|ZP_06766665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229447029|gb|EEO52820.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352502|gb|EEZ01602.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637546|gb|EFF55960.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294444882|gb|EFG13568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 583

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 146/262 (55%), Gaps = 12/262 (4%)

Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579
           V+E    P+ N Q  +    + V D    +  + E  +A  +A   D++K++F+ ++S+E
Sbjct: 168 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 227

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL  ++      ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 228 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 284

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 285 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 344

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG T+ +   + +GD    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 345 KYTSKG-TIEMGYEKIDGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 401

Query: 760 IVESFINLHGGHVSISSS-DEG 780
           I ++ +    G +   S  D+G
Sbjct: 402 ICKAIVEACRGEIGFESEFDKG 423


>gi|89097664|ref|ZP_01170552.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
 gi|89087523|gb|EAR66636.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
          Length = 956

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 129/220 (58%), Gaps = 13/220 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D++K+ FV  VS+ELR+PL +I+GFT+L+   +L     KQ +Y+  I   +  L +L
Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASILGFTELMLNRELKP--DKQKKYLTTIYNEARRLTSL 638

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGS-- 679
           +ND LD+  ++AG        + L  ++ +V  KQ I T +H    +IK I D  +G+  
Sbjct: 639 INDFLDVQRMEAGKQTYEKKYLRLLPIIEQVIEKQQINTDIH----KIK-IDDRSIGNDV 693

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D+ ++ Q+F+ ++SNA+ +S  G  +I++  +++   +  V++ G  IPED    +F
Sbjct: 694 ILGDKSKVEQVFTNLISNAVKYSPGGGDIIIRLYQEDKSVLAEVEDKGLGIPEDALDKLF 753

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +F  V N+ R +  G GLGLSIV+  +  H G +S++SS
Sbjct: 754 TKFYRVDNSDRRRIGGTGLGLSIVQEIMKAHSGSISVASS 793


>gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 838

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 136/259 (52%), Gaps = 11/259 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   ++T+  + E AL         A+  K+ F+ ++S+E+R+PL  ++G   L++T+ 
Sbjct: 429 LLLLADITERKQVEAALRNAKRVAETANVAKSEFLANMSHEIRTPLNGVLGMLQLMRTT- 487

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             SL+++Q +Y+     S+  L  L++DILDL+ ++AG + L  +   + DL   + +  
Sbjct: 488 --SLDAEQREYLAAAILSTQRLTGLLSDILDLSRIEAGKLTLQEADFKVADLKASILEVF 545

Query: 659 ATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA---R 714
           +       +R++  +D  + + +A D  R+ QI   ++ NA+ F++ G   +   A   R
Sbjct: 546 SLVARNKGLRLEFSTDAAMPARLAGDETRIRQILFNLVGNALKFTTTGGVDVAAFALPPR 605

Query: 715 DNGDF--IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGG 770
            +G    +FSV++ G  IP+     +   FV    A    R G GLGLSIV   + + GG
Sbjct: 606 ADGRLPVVFSVRDTGVGIPDARLADIVEPFVQGLGAPYAPREGAGLGLSIVRRLVRMMGG 665

Query: 771 HVSISSSDEGVTTINCRIP 789
            ++I + + G TTI C +P
Sbjct: 666 ELAIDNREGGGTTIYCALP 684


>gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
 gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
          Length = 926

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 141/258 (54%), Gaps = 14/258 (5%)

Query: 530 IIPLPNAQTMLT-FV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I P+ N Q  +T +V    ++T+  R    L    E   ++D +K  F++++S+E+R+P+
Sbjct: 515 IAPVKNEQGDITNYVAVKEDITERKRLWSELVAAKEKAEESDRLKTCFLENMSHEIRTPM 574

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF++LLK   L    SK+ +Y+E I  S   +L+++ND++D++ ++AG + + Y+ 
Sbjct: 575 NGILGFSELLKEPLLD--GSKKDEYIELIHQSGKRMLSIINDLIDISKIEAGEIAIQYTE 632

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             L+ + ++++     +     + +             V D+ RL+QI + ++ NA+ ++
Sbjct: 633 ASLDKIFHDLQAFFEPQATRKGLLLHCTGCVPPSASVIVTDKSRLVQILTNLVQNALKYT 692

Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           + G   I      NGDF+ F V++ G  IP+ + + +F+RF        R   GVGLGLS
Sbjct: 693 ASGE--ICFGCTKNGDFLDFYVRDTGIGIPDFLTEKIFDRFRQAQVDPVREYEGVGLGLS 750

Query: 760 IVESFINLHGGHVSISSS 777
           I +S + L GG + + SS
Sbjct: 751 ISKSLVELLGGRIGVQSS 768


>gi|262273972|ref|ZP_06051784.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262221782|gb|EEY73095.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1112

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 139/266 (52%), Gaps = 14/266 (5%)

Query: 533 LPNAQTMLTFV---NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           L +   M+ FV    + D +  E  +    E   +A+E K +F+  +S+E+R+P+  I+G
Sbjct: 438 LSSLSAMVNFVRQKKLNDMISEE--MVRAKEDAERANEAKTNFLAMMSHEIRTPMNGIVG 495

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            ++LLK +    LN +QS +V+ +  SS  LLN++ND+LDL  ++AG M+L      L D
Sbjct: 496 MSNLLKET---DLNQQQSYFVDTLIHSSNALLNIINDVLDLTKIEAGKMRLIEQESELTD 552

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           L+++       K  E ++R+  + D  L    + D  R  QI   ++ NA+ F+  GS +
Sbjct: 553 LVHDALVVFHAKAVEKSLRLHCLIDPHLPRWLILDPVRYTQIILNLVGNALKFTKHGSVM 612

Query: 709 I-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
           + L    + G D +   VK++G  IPED   ++F  F  V N++    +G GLGL +   
Sbjct: 613 VHLSLVTEGGSDMLRLEVKDSGIGIPEDKLHNIFENFTQVDNSYSRSYQGTGLGLPVCRK 672

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
           FI L  G + + S +   TT    +P
Sbjct: 673 FIELMDGDIRVVSKEAVGTTFTADVP 698


>gi|150007794|ref|YP_001302537.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298376836|ref|ZP_06986791.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|149936218|gb|ABR42915.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298266714|gb|EFI08372.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 632

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 133/222 (59%), Gaps = 13/222 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++
Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +LL L++DILDLA +++G M   ++ + + +++NE+  S   KM  +N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKM-PDNVALIAPKDSPE 505

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
               +DR RL Q+ S  L+NA+ ++S+G  ++  A    GD I FSV + G  + +++  
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCIIL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776
            +F+RF    ++G   ++G GLGLSI E+ +N  GG + ++S
Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601


>gi|222085300|ref|YP_002543830.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221722748|gb|ACM25904.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 510

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 127/241 (52%), Gaps = 9/241 (3%)

Query: 558 KNEALRK------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYV 610
           ++EA RK      A++ K+ F+  VS+ELR+PL  I+GF+D+L     G L N++Q +YV
Sbjct: 222 RDEADRKTAEAESANDAKSRFLAAVSHELRTPLNAILGFSDILSGEYFGKLENNRQREYV 281

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL++VN +LD++ ++AG  +L      +   +   +  +A +  E  + + 
Sbjct: 282 GLIRQSGAHLLSVVNTMLDMSKIEAGRYELVPEPFPIEASIGACEAMLALQAKEKGLTLT 341

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 LG  VAD++ + Q+   ++ NA+ F+  G  V + AA  +G    SV + G  I
Sbjct: 342 SRVQRGLGDIVADQRAIQQVLINLVGNAIKFTDAGGAVTIDAAMADGMLKLSVCDTGIGI 401

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             D   S+   FV   +   RR  G GLGLS+V+  + LHGG  +I+S+    T I   I
Sbjct: 402 AADRLASLGQPFVQIQNDYTRRYAGTGLGLSLVKGLVGLHGGSFAIASAPGEGTVITILI 461

Query: 789 P 789
           P
Sbjct: 462 P 462


>gi|119490047|ref|ZP_01622671.1| two-component sensor kinase [Lyngbya sp. PCC 8106]
 gi|119454199|gb|EAW35351.1| two-component sensor kinase [Lyngbya sp. PCC 8106]
          Length = 641

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 138/257 (53%), Gaps = 21/257 (8%)

Query: 552 ERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGS-- 601
           ER +TE+ +AL       + A+  K+ F+  +S+ELR+PLT +IG +  LL+    G+  
Sbjct: 232 ERRVTERTQALHDALLAAQSANRAKSEFLATMSHELRTPLTCVIGISATLLRLYSNGAGI 291

Query: 602 ---LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 KQ +Y+  I  S   LL L+NDIL+L+ V+AG   L  S   L  L  +   S 
Sbjct: 292 KQISREKQQEYLHKIHDSGEHLLELINDILELSEVEAGKTILQISEFSLTKLAQKTLYSF 351

Query: 659 ATKMHENNI----RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +  E+N+     I+V  D  L  F+AD++R+ ++   +LSNA+ F+ +   V L+   
Sbjct: 352 RERAQEHNVLLISDIQVKPDEDL--FIADQRRVEKVLFNLLSNAIKFTPESGQVTLRVGV 409

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +    IF +++ G  I E+    +F +F  + +++R Q  G GLGL++ +  + LHGG +
Sbjct: 410 NKNTAIFQIQDTGIGISEEQQPLLFEKFQQLDSSYRRQYSGTGLGLALTKQLVELHGGVI 469

Query: 773 SISSSDEGVTTINCRIP 789
            ++S++   +T    IP
Sbjct: 470 KLTSTENVGSTFTVHIP 486


>gi|262382892|ref|ZP_06076029.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295770|gb|EEY83701.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 1021

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 133/234 (56%), Gaps = 5/234 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  + E  L    +   +++++K++F+ ++S+E+R+PL  I+GF+++L ++    L
Sbjct: 633 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 690

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             K+ ++ + I  ++++LL L+NDILDL+ ++AG ++  Y  + +N +L +++QS   K 
Sbjct: 691 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 749

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +++I      +      DR RL Q+   +L+NAM F+  GS +     +D+    F 
Sbjct: 750 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFY 809

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IPE+  K +F RFV      Q  G GLGLSI E  +    G + + S
Sbjct: 810 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 861


>gi|239787541|emb|CAX84010.1| Sensor protein [uncultured bacterium]
          Length = 834

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 11/259 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++ D V  E AL    +    A+  K  F+ ++S+ELR+PL +IIGF+D+L     G
Sbjct: 573 TDADIIDHVLTEAALRAAKDNAEVANRAKTEFLANMSHELRTPLNSIIGFSDILVNQSFG 632

Query: 601 SLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +     +YVEY   I+++ + LL+L+NDILD++ ++   + LN   I    + N  ++ 
Sbjct: 633 PMGV--PEYVEYARDINSAGSHLLSLINDILDVSRIEVEALSLNEQRIDAAHMANSCQRL 690

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
           +  +     + + +    +   +  AD +R+ Q+   +L+N++ F+  G TV LK   D 
Sbjct: 691 VLDRAKRAKLNLVLDMPKQFPAALYADERRVKQVLLNLLANSIKFTEPGGTVTLKGMLDE 750

Query: 716 NGDFIFSVKNNGSSI-PEDM--CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G F+F+V + G  I PED+    S F +  S+  R +  G GLGL + +  + LHGG +
Sbjct: 751 EGRFVFAVADTGIGIAPEDIEAAMSTFGQVDSSFTR-RYEGAGLGLPLSKKLVELHGGGL 809

Query: 773 SISSSDEGVTTINCRIPSK 791
           S+ S     TT+  R P +
Sbjct: 810 SLESQPGVGTTVTIRFPKE 828


>gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1821

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 128/244 (52%), Gaps = 11/244 (4%)

Query: 544  NVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            ++T+  +AE+ L E NE        L +A  +K+ F+  +S+ELR+PL  I+G  + L+ 
Sbjct: 1291 DITERKQAEKQLRESNERISLANAELARATRLKDEFLASMSHELRTPLNAILGLAEALQE 1350

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               GSL  KQ + +  I  S   LL+L+NDILDL+ +++G M L+ S + ++ L      
Sbjct: 1351 EVYGSLTPKQHKSLATIEQSGKHLLDLINDILDLSKIESGKMSLSVSLVSVDSLCESSLT 1410

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             I  +  + NIR++      L     D +R+ Q+   +LSNA+ F+  G  V L+   D 
Sbjct: 1411 FIKQQAQQKNIRLEYHIAPGLSEIEVDERRIRQVLVNLLSNAVKFTPDGGKVSLQVTTDP 1470

Query: 716  NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            +G+ +  SV + G  I  +    +F  FV       RR  G GLGL++V   + L GG +
Sbjct: 1471 DGEKLQLSVTDTGIGIAPENLDKLFKPFVQLDSSLSRRYAGTGLGLALVRRIVELQGGSI 1530

Query: 773  SISS 776
            ++ S
Sbjct: 1531 ALES 1534


>gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 1388

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 10/251 (3%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L E+   L  A + K+ F+ ++S+ELR+PL +++    LL  +  G+L +KQ +Y
Sbjct: 845  QARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILAGLLARNPKGNLTAKQVEY 904

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M L+   + L  ++++++ +      E  +R+
Sbjct: 905  AHVIHSAGSDLLQLINDILDLSKVEAGKMDLHVEPVALAAVVDDLRATFTPVTTEKGLRL 964

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKA---ARDNGDFI-F 721
            KV I+    G  + DR RL QI   +LSNA+ F+ +G    T+ + A    R  G+ + F
Sbjct: 965  KVEIAPDVPGRLLTDRHRLAQILRNLLSNAVKFTEQGRVELTITMMAPASGRPGGEHVLF 1024

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            +V + G  I E+    +F  F        RR  G GLGLSI      L GG +   S   
Sbjct: 1025 AVTDTGIGIAEENLDRIFGAFQQGDGTTSRRYGGTGLGLSICREVATLLGGEIRARSVYG 1084

Query: 780  GVTTINCRIPS 790
              +T    +P+
Sbjct: 1085 SGSTFTLDLPT 1095


>gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 747

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 136/265 (51%), Gaps = 3/265 (1%)

Query: 531 IPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I L     +L FV ++T   + E  L         A++ K+  + +VS+ELR+PLT IIG
Sbjct: 470 IDLGGKPAILGFVRDITMQKQTEDNLVYAKMEAYAANQAKSDMIANVSHELRTPLTTIIG 529

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+D+L   K G LN  Q +Y+  I      L N++N++LDL+ +D+G + ++   I +++
Sbjct: 530 FSDVLLKGKAGDLNDSQEKYLSKIHDRGQQLHNIINEMLDLSKIDSGELDVSCEYIAVHE 589

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L   +K ++     +  + I+   + ++    AD  +L  I   +L N++ F+  GS  I
Sbjct: 590 LFENLKSNVYPIASKKGLTIETKINQRVDYIYADELKLKHILYNLLYNSVKFTDDGSITI 649

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
                +N ++ FSV ++G  IP +    +F  F  +      +  G GLGL++V+  + L
Sbjct: 650 KLDLDENNNYKFSVVDSGIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGLGLTLVKRLVEL 709

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           HGG++ + S     +     IPS E
Sbjct: 710 HGGNIWVESEVGTGSKFTFTIPSDE 734


>gi|331015224|gb|EGH95280.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 576

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 142/280 (50%), Gaps = 32/280 (11%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------- 715
              I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L A R         
Sbjct: 411 LQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTL-AVRQVSRAQVGI 469

Query: 716 -NGDFI----------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
            +GD+                  SV + G  I +     +F  F  + ++   +  G GL
Sbjct: 470 LDGDWPVHSFSLPPSDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792
           GL++V+    LHGG V+++S  D G   V  +  R P+ E
Sbjct: 530 GLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRTPATE 569


>gi|167043517|gb|ABZ08213.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [uncultured marine microorganism HF4000_APKG2J17]
          Length = 669

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/256 (35%), Positives = 143/256 (55%), Gaps = 7/256 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++TD  +AE +L +  E    A+  K  F+ H+S+ELR+PL  I+G++D+LK+   G 
Sbjct: 409 MIDITDRKQAEESLRKAMERAEFANRAKAEFLAHMSHELRTPLNAILGYSDILKSQVFGP 468

Query: 602 L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           L N K S YVE ISA+   LL +++DILD++ V+AG + +  S I +   + E K  +  
Sbjct: 469 LGNEKYSDYVENISAAGGHLLGILSDILDVSKVEAGELDIEDSEIDIAAAIKECKIMMLE 528

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
           +     + +  +  G L    ADR+RL QI   +LSNA+ FS +   V + A  D  G  
Sbjct: 529 RADIAKVSLASLVAGDLPRLRADRRRLRQILLNLLSNAVKFSHEKGKVSIAAETDAAGAI 588

Query: 720 IFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSIS 775
           +  V + G  I PE+M K +   F  V  ++ G+   G GLGLS+V S ++LHGG + I 
Sbjct: 589 VIRVADTGIGIAPENMGK-ILQPFGQVKESYVGKPGEGSGLGLSLVNSLMDLHGGTLDID 647

Query: 776 SSDEGVTTINCRIPSK 791
           S+    TT+N   P +
Sbjct: 648 STPGEGTTMNIIFPPE 663


>gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM
            6578]
          Length = 1278

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 129/247 (52%), Gaps = 11/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE+ L E  E   +A   K+ F+ ++S+E+R+PL  IIGFTDLL +S     + K++ Y+
Sbjct: 780  AEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS---FPSGKEASYL 836

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I +S   LL L+NDILDL+ ++AG M L+YS + L   + E+     T++    +   
Sbjct: 837  DAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENKGLSFI 896

Query: 671  VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVK 724
            +     L   V  D  RL Q+   ++ NA+ F+ +G   +     L       D   SV+
Sbjct: 897  LDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGTLHTEESKVDLTISVE 956

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I  +  +++F  F  ++ +  R+  G GLGL+I +  + + GG +S+ S     T
Sbjct: 957  DTGIGIRPEEREAIFQSFHQSSGQDSRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGT 1016

Query: 783  TINCRIP 789
            T   RIP
Sbjct: 1017 TFTVRIP 1023


>gi|227537039|ref|ZP_03967088.1| possible two-component hybrid sensor and regulator
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243131|gb|EEI93146.1| possible two-component hybrid sensor and regulator
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 720

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 136/247 (55%), Gaps = 9/247 (3%)

Query: 551 AERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER L   EK E L  + + K+ F+ ++S+ELR+PL +I+  + L+  +   +LN  Q +
Sbjct: 28  AERNLEIQEKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMSENTEENLNEDQIE 87

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             + I +S T LL+L+++ILDL+ ++AG M+L Y  + L+D+  E+    A  + E ++ 
Sbjct: 88  SAKVIQSSGTSLLSLIDEILDLSKIEAGKMELEYQHVRLSDVTQELNSLFAPIVKEKSLD 147

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKN 725
           + ++    L S +  DR RL Q+   +LSNA+ F+SKGS    I +   +  + +F+VK+
Sbjct: 148 LNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIKFTSKGSITLTITEEQSNRNNIVFAVKD 207

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I E+  K +F  F   A    RR   G GLGLSI      L GG + + S +   +
Sbjct: 208 TGIGIAEEKQKIIFEAF-QQADGSTRRKFGGTGLGLSISREIARLLGGEIRLQSKENEGS 266

Query: 783 TINCRIP 789
             +  IP
Sbjct: 267 IFSLIIP 273


>gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
 gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
          Length = 2607

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 102/389 (26%), Positives = 184/389 (47%), Gaps = 37/389 (9%)

Query: 424  DLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +L T+ + L++ Q E           ++EGV V  P G++ L NPA   + +    RL  
Sbjct: 2226 ELATRNSILLEEQREESSKSAAVFRSVTEGVIVLDPQGQVTLFNPAAEQVLEIPAERL-- 2283

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--------VLEY 528
               +R        Y  + D       + T      K +Q T ++ S S        V+  
Sbjct: 2284 ---LRQPLNRLHDYGEDDDQRKRAQTLYTGLMTGLKQVQETDKIYSSSLDLTNPNQVIAL 2340

Query: 529  SIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            +I P+  P+ Q     + + D  R             +ADE K  F+  VS+ELR+PLT 
Sbjct: 2341 NIAPVIGPDGQGYGKVIVLRDITRE-----------IEADEAKRQFISDVSHELRTPLTA 2389

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            I G+ D+L  S   +L S Q  Y+  I  ++  L  L+ DIL+ +  DA   KLN++ + 
Sbjct: 2390 IKGYVDVLLLSGTQTLTSDQVSYLGIIKNNTNRLKALIEDILEFSRPDAS-KKLNFTRLS 2448

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            + ++++EV  S+  +    ++ ++V +   L + +AD++R+ Q+   + SNA+ ++ +G 
Sbjct: 2449 IPEVIDEVVSSLRLEYQRKDMSVEVDAPHDLPTVMADQKRITQVVFNLFSNAVKYTFEGG 2508

Query: 707  TVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
             + ++A  +  + F   V++ G  +  +  K +F  F    N  R    G GLGLSI ++
Sbjct: 2509 HIHVRAFLNRANMFQVDVEDTGVGMSPEQRKKLFRPFYRADNPLRDVAGGTGLGLSIAKA 2568

Query: 764  FINLHGGHVSISSSDEGVTTINCRIPSKE 792
             I  HGG + ++S     +T +  +P ++
Sbjct: 2569 LIEQHGGEMWVTSEIGKGSTFSFILPLQQ 2597


>gi|255012920|ref|ZP_05285046.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1045

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 133/234 (56%), Gaps = 5/234 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  + E  L    +   +++++K++F+ ++S+E+R+PL  I+GF+++L ++    L
Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 714

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             K+ ++ + I  ++++LL L+NDILDL+ ++AG ++  Y  + +N +L +++QS   K 
Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +++I      +      DR RL Q+   +L+NAM F+  GS +     +D+    F 
Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFY 833

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IPE+  K +F RFV      Q  G GLGLSI E  +    G + + S
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 885


>gi|237717311|ref|ZP_04547792.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|229443294|gb|EEO49085.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
          Length = 403

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 144/273 (52%), Gaps = 23/273 (8%)

Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568
           +L+ D VL   E  I PL N   +    +++    AE+   ++ + L+ A       D +
Sbjct: 126 DLMLDGVLHHYENRIFPLDNKYLLCMCRDISQQWEAEQTNAQQQKELKAARVKAEESDRL 185

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ L+      +   +++QY E I  +S +LLNL NDIL
Sbjct: 186 KSAFLANMSHEIRTPLNAIVGFSKLIT---FATSTEEKNQYAEIIERNSEMLLNLFNDIL 242

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQR 686
           DL++++A  +K N   I L D+  ++KQ      H+    +K+I D       A  D  R
Sbjct: 243 DLSSLEADSLKFNIRPIKLTDICLQLKQQFC---HKTQNGVKLILDDVDADMYASGDWNR 299

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
           ++QI S +LSNA  F+ KG   I    R+  DF+ F VK++G  IP +   ++F RF   
Sbjct: 300 IIQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKV 357

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
               Q  G GLGL++    +   GG + + S +
Sbjct: 358 NDFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 388


>gi|84685778|ref|ZP_01013674.1| hypothetical protein 1099457000261_RB2654_13705 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665871|gb|EAQ12345.1| hypothetical protein RB2654_13705 [Rhodobacterales bacterium
           HTCC2654]
          Length = 534

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 161/377 (42%), Gaps = 9/377 (2%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +E+         L+  +   +   D   F +W  D +G I W N +Y    ++     Q 
Sbjct: 135 TEIGPDKYAVAALNRELDTLRAATDRTPFPIWQEDASGVITWCNRAYLDLADSMEEGGQS 194

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID- 294
                 +LF     +   SS A  +     ++         +++   LN  G+   AI  
Sbjct: 195 YKWPPTRLFAGPTAED--SSDAESRRERMALTPTGEETRHWFEVETRLNGDGQICTAIPA 252

Query: 295 ---VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
              V  E++  + +T   +   +L + +AIF ++R L   N + ++L  + + FL + PS
Sbjct: 253 DDLVKAEVSRTEFVTTLSKTFASLPIGLAIFSRSRELAMFNPALLDLTTLPVDFLVSKPS 312

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPR 409
               L+ LR    +PE  ++K+W++ I  +  ++   T++++W LP GQT  V    +P 
Sbjct: 313 LAAFLDRLREMQMMPEPKDYKSWRQRISDLVDAARNGTYEESWTLPGGQTYRVTGRPHPD 372

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G   ++FE+++ ++ L  +Y   ++    T+D L   +AVF   G + LSN  +  LW  
Sbjct: 373 GAVAFLFEDISAEIGLARRYRAEIETAQATLDALPSAIAVFSTSGVLTLSNSHYAGLWVP 432

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           E+        I             S  WD     +      R++++  + L     L   
Sbjct: 433 EDGSDPSTMPIYEAVELWREAALPSAVWDQIKGAV-GHAGPRETVETGISLKDGRSLICR 491

Query: 530 IIPLPNAQTMLTFVNVT 546
           ++PLP   T++ F  VT
Sbjct: 492 VVPLPRGFTLIEFAQVT 508


>gi|298482223|ref|ZP_07000410.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271510|gb|EFI13084.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 420

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 179/336 (53%), Gaps = 30/336 (8%)

Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529
           R+    H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   E +
Sbjct: 84  RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--EMT 141

Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           + P   + +            +LT  +VT+    +R LT + E    A+++K++F+ ++S
Sbjct: 142 VTPCDVSVSGTYLNIHGQDYMVLTVYDVTELKNVQRLLTIEKEHSISAEKLKSAFIANMS 201

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ L+ ++   S   ++  Y + ++ ++  LL LVNDI DL+ +++G 
Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SGEEERKMYADILAENNERLLRLVNDIFDLSQIESGT 258

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695
           +   Y+   +NDLL E+      K+  NN  +K+I +  +   +  ++R+R++Q+ S +L
Sbjct: 259 IDFVYTEFDVNDLLRELDGIFKAKL--NNSSVKLICEAHVQPIIMYSERERIIQVLSNLL 316

Query: 696 SNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            NAM F++ G   I    R  G  +  F V + G  IPE+  K +F+RF+      Q  G
Sbjct: 317 HNAMKFTASGE--IRFGCRLEGMEEVYFFVSDTGIGIPEEEQKKIFSRFIKLDREMQ--G 372

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL++ ++ I   GG++ + S     +T +  +P
Sbjct: 373 TGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLP 408


>gi|213968375|ref|ZP_03396519.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1]
 gi|301384641|ref|ZP_07233059.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058906|ref|ZP_07250447.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302133019|ref|ZP_07259009.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927013|gb|EEB60564.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1]
          Length = 576

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 140/279 (50%), Gaps = 30/279 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------- 714
              I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +         
Sbjct: 411 LQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGIL 470

Query: 715 -----------DNGDF----IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
                        GD+      SV + G  I +     +F  F  + ++   +  G GLG
Sbjct: 471 DGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLG 530

Query: 758 LSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792
           L++V+    LHGG V+++S  D G   V  +  R P+ E
Sbjct: 531 LAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRTPATE 569


>gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 897

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 130/250 (52%), Gaps = 10/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ D  + E AL +  EA   A   K+ F+  +S+ELR+PL  I+GFT L++     S N
Sbjct: 397 DIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLMERELYHSPN 456

Query: 604 ---SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              S   +++E I  S   LL L+ND+L+++ ++AG + LN +   L  LLN +++ +  
Sbjct: 457 IPLSDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLEL 516

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARD 715
                 + +    D  + +++ AD Q+L Q  + +L NA+ F+ +G  ++     K   D
Sbjct: 517 PASSKKLTLDFAIDDNIPTYIYADEQKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHD 576

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            G   F V++ G  I       +F  F  +   R  ++G GLGLSI + FI L GG + +
Sbjct: 577 LGQLCFEVQDTGPGIDASEMDLLFEPFSQTETGRNSQQGTGLGLSITQKFIGLMGGEIQV 636

Query: 775 SSSDEGVTTI 784
            SS+ G  TI
Sbjct: 637 -SSERGKGTI 645


>gi|255013497|ref|ZP_05285623.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 632

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 133/222 (59%), Gaps = 13/222 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++
Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +LL L++DILDLA +++G M   ++ + + +++NE+  S   KM  +N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKM-PDNVALIAPKDSPE 505

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
               +DR RL Q+ S  L+NA+ ++S+G  ++  A    GD I FSV + G  + +++  
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCIIL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776
            +F+RF    ++G   ++G GLGLSI E+ +N  GG + ++S
Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601


>gi|256838460|ref|ZP_05543970.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739379|gb|EEU52703.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 1045

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 133/234 (56%), Gaps = 5/234 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  + E  L    +   +++++K++F+ ++S+E+R+PL  I+GF+++L ++    L
Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 714

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             K+ ++ + I  ++++LL L+NDILDL+ ++AG ++  Y  + +N +L +++QS   K 
Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +++I      +      DR RL Q+   +L+NAM F+  GS +     +D+    F 
Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFY 833

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IPE+  K +F RFV      Q  G GLGLSI E  +    G + + S
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 885


>gi|157962196|ref|YP_001502230.1| histidine kinase [Shewanella pealeana ATCC 700345]
 gi|157847196|gb|ABV87695.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 806

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 136/239 (56%), Gaps = 11/239 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E+ L    E  ++A+  K+SF+ ++S+E+R+PL  IIG T++L  SKL ++   Q  Y
Sbjct: 299 RMEKGLIFAREKEQQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAI---QKDY 355

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I++SS  LL L+NDILDL+ +++G ++    T  + +++ +    I  K  + NI +
Sbjct: 356 LATINSSSQTLLMLINDILDLSKIESGHLEFCPHTCNIKEVIYDTAALITPKAQQKNIVL 415

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR-DNGDFIFSVK 724
           ++I   ++ +++ AD Q+L QI   + SNA+ F+  GS    +++KA   +N   +FSVK
Sbjct: 416 RIIIGDEVPTYICADEQKLRQILMNLASNAIKFTRSGSVSFKLVVKAEEGENIRLLFSVK 475

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  I ++    +F  F            G GLGLSI    + + GG + I SSD+GV
Sbjct: 476 DTGVGIDKNKHAKIFEEFQQEESNTSIDYGGTGLGLSIATKMVKIMGGEIMI-SSDKGV 533


>gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 542

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 129/231 (55%), Gaps = 3/231 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+ ++S+ELR+PL  IIG+TDLL     G LN KQ +Y+  I++S   LL+L+
Sbjct: 165 ANRAKTQFLSNMSHELRTPLNVIIGYTDLLSEQLPGKLNEKQLRYIGEINSSGKFLLSLI 224

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND+LD++ +DAG M+L    + +++L+N +   ++ +  +  I++K+I + +L   +AD 
Sbjct: 225 NDLLDMSKIDAGAMELELEDVSIDELINGMVSMMSRQFVKKKIKVKIIIEPELSVVMADL 284

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF- 742
           ++  QI   +L+NA+ F+ K   V + A  D    +   V++ G  I ED    +F+ F 
Sbjct: 285 RKCKQILMNLLTNALKFTPKDGRVEICAVSDGDSGVKIEVRDTGIGIAEDKIDKIFSEFY 344

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              N    Q  G G+GL++    + LH G + + S     +T    +P K+
Sbjct: 345 QAENVIDEQLGGTGIGLALTRRLVELHDGKIGVESKLGKGSTFWFTLPLKK 395


>gi|224539126|ref|ZP_03679665.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519257|gb|EEF88362.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 774

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 134/242 (55%), Gaps = 13/242 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+   AER L    E   +++ +K++F+ ++S+E+R+PL  IIGF+ +L  ++      
Sbjct: 531 ITERKIAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILAMTED---EE 587

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++ ILL L+ND+LDL+ ++AG++ L YS   LN +L  +K  + +++ +
Sbjct: 588 EKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFGLNGVLATLKGVVESRLQD 647

Query: 665 NNIRIKVI-SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
              R+ +I   G    +V  +++ RL Q+    L+NA  F+S GS       RD  D  +
Sbjct: 648 ---RVDLIFEPGMPDDYVVYSEKNRLQQLVLNFLTNACKFTSTGSIRYGYEVRDK-DIYY 703

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
            V + G+ IPED    +F RF+      Q  G GLGL I +  I   GG + ++S   EG
Sbjct: 704 YVTDTGTGIPEDKLHLIFERFIKLDSFKQ--GTGLGLPICQLIIQNMGGEIGVNSKLGEG 761

Query: 781 VT 782
            T
Sbjct: 762 ST 763


>gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 760

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 11/250 (4%)

Query: 550 RAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           R ER  AL +  +A   A+  K+ F+ ++S+E+R+P+  +IG  +L+  +    L+  Q 
Sbjct: 219 RDEREFALEDARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET---DLDDDQK 275

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y E IS S + LL ++NDIL+ + ++AG M+L+ +   L   + +V   ++ K  E N+
Sbjct: 276 MYAETISKSGSALLTIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLLSPKAAEKNV 335

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSV 723
            + +  D  L  F   D  R+ QI + I  NA+ F+S G   I  +    G   D   SV
Sbjct: 336 EVTLRYDPGLPEFFEGDVGRIRQILTNIAGNAVKFTSAGYVYIEVSGHTAGGYSDLRISV 395

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G+ IP D   S+FN F  V  A      G GLGL+I    + + GG VS++S     
Sbjct: 396 KDTGTGIPADQLNSIFNAFEQVDGAATRNFEGTGLGLAISTRLLGMMGGTVSVTSVLGEG 455

Query: 782 TTINCRIPSK 791
           +T    +P K
Sbjct: 456 STFTVELPLK 465


>gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075462|gb|ADJ64861.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1160

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 3/243 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L  +   D  + +  L EK   L +A++ K+ F+ ++S+ELR+PL + +    LL  
Sbjct: 443 QTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLAD 502

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +K G+L+ +Q ++ + IS++   LL L+NDILDL+ ++AG + +   +  L  L +E+  
Sbjct: 503 NKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSA 562

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           S A    +  +  KV +  G       D QRL QI   +LSNA+ F+ KG   +      
Sbjct: 563 SFAITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSLRIYPDA 622

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G   F+V++ G  I ED  + +F  F        R+  G GLGLSI     +L GG + 
Sbjct: 623 GGRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIR 682

Query: 774 ISS 776
           ++S
Sbjct: 683 VTS 685


>gi|83312715|ref|YP_422979.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947556|dbj|BAE52420.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 870

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 222/510 (43%), Gaps = 29/510 (5%)

Query: 292 AIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A+D S+ E++   +   T  IL N+   I+++D +  L   N  F EL  +         
Sbjct: 368 ALDTSRRELSTKSRTLET--ILDNIAQGISVYDDDLRLVACNHRFGELLRLPPDMTRPGT 425

Query: 351 SNDELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           + ++ L F  R     P        +     + ++ + H+      +G  L VI    P 
Sbjct: 426 ALEDYLRFNARRGEYGPGDPEAHVAER--MDLARNFQPHRFQRQRADGTALEVIGNPLPG 483

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--W 467
           GG +    ++T     E    TL +     ++     V +  P G I   NP F  +  +
Sbjct: 484 GGFVATHTDITEARRAEEALRTLSRA----VEQSPVSVIITDPRGNIDYVNPKFMEVCGY 539

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             EE R   G + R + +  ++    +D W    A  T ++ E ++ +   EL  +    
Sbjct: 540 TLEEVR---GLNPRLLKSGLTQDAVYADLWRTITAGGT-WEGELQNRRKNGELYWERA-- 593

Query: 528 YSIIPL--PNAQTMLTFVNVTDSV----RAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            SI P+  P+   +L ++ V + +     AE AL    +A   A+  K  F+ H+S+ELR
Sbjct: 594 -SISPIRSPDG-AILHYLAVKEDITARKAAEDALVAAMQAAEDANRAKTVFLSHMSHELR 651

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT ++G+T++L++   G L S+ + +V  IS S   LL++++++LD++ ++ G  ++ 
Sbjct: 652 TPLTAVLGYTEMLESGMAGPLPSQHADFVAAISDSGRHLLSIIDEVLDISRIELGSYRIA 711

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                L  +  E    +  +    +I++ +   G +   V D + + Q+   +L NA+ +
Sbjct: 712 TGPTDLRSIAQECVGMLRPQCVAKDIQLDLEEGGAM-PLVTDSRAVRQVLINLLGNAVKY 770

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           +  G  + +   R        V + G  I  D    VF  F  V        RGVGLGL+
Sbjct: 771 TEAGGRISVGLTRAGQTLRVVVADTGCGIATDKLAHVFEPFQRVDPLRADPARGVGLGLA 830

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I    + L  G ++I S     T +   +P
Sbjct: 831 ICRRIVELLHGDIAIQSEPGRGTAVTLTLP 860


>gi|309791779|ref|ZP_07686267.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226185|gb|EFO79925.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 861

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 135/266 (50%), Gaps = 16/266 (6%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LT  NV      E  + ++ E LR A       D  K+ F+  +S+ELR+PL  IIGF+ 
Sbjct: 593 LTIQNVQLYHNLEHQVAQRTEELRAALEKAQLADRRKSDFLTGISHELRTPLNAIIGFST 652

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L     G L   Q +  + I+ +   LL+L+N++LDLA ++AG + L+   + L  L++
Sbjct: 653 VLIDELDGPLAPMQREDAQSINRNGRFLLHLINELLDLARIEAGHLDLDLGRVDLAPLVS 712

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV  ++   +    + +       L +  AD  R+ QI   +LSNA+ F+ +G+  +   
Sbjct: 713 EVLDTMQGLLRSGQVSLNQNLPADLPAVCADADRIRQILFNLLSNAVKFTERGTITVSAN 772

Query: 713 ARD----NGD----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763
            RD    +G+     +  +++ G  IP +    +F  FV  +  R +RRG GLGL+IV  
Sbjct: 773 LRDEIGPDGNAQSMVVMHIRDTGIGIPANRQHEIFEEFVQVHDKRLRRRGTGLGLAIVRR 832

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +  H GH+ + SS    +T +  +P
Sbjct: 833 LVEAHQGHIWVESSPNEGSTFSFSLP 858


>gi|227821337|ref|YP_002825307.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227340336|gb|ACP24554.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 527

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLV 624
           ++ K  F+  VS+ELR+PL  I+GF+D+L     G L N +Q +YV  I  S T LL++V
Sbjct: 243 NDAKTRFLAAVSHELRTPLNAILGFSDVLTGEYFGKLENDRQREYVSLIHRSGTHLLSVV 302

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N +LD++ ++AG  +L      + D +   +  ++ +  E  +R+       +G   AD+
Sbjct: 303 NTMLDVSKIEAGRYELVPEPFRVADAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQ 362

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           + + QI   ++ NA+ F+ KG  V + A  D      +V + G  I ED  + +   FV 
Sbjct: 363 RAVQQILINLVGNAVKFTDKGGLVTVDAEVDGAMLNLTVSDTGIGIAEDKLEKLGQPFVQ 422

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +   RR  G GLGLS+V+  + LHGG +SI SS+   T +   IP
Sbjct: 423 IQNDYTRRYEGTGLGLSLVKGLVELHGGGISIRSSEGEGTVVVVSIP 469


>gi|307152913|ref|YP_003888297.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983141|gb|ADN15022.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1613

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 19/244 (7%)

Query: 550  RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            R  + L+EKN+AL +A       ++ K+ F+ ++S+E+R+P+  ++GF+DLL+       
Sbjct: 1094 RRLKQLSEKNKALGRAKKEADIANKAKSEFLANMSHEIRTPMNAVLGFSDLLQDI---IT 1150

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              +  +Y+E ISAS   LL L+NDILDL+ ++AG + L+Y  I L  L+ E++Q    + 
Sbjct: 1151 EPEAKEYLEAISASGKTLLRLINDILDLSKIEAGKLTLHYEPINLRILIAEIEQIFRHQA 1210

Query: 663  HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
             E  + +K   D KL   V  D  RL QI   ++ NA  F+  G   I    R N     
Sbjct: 1211 TEKGLNLKSEIDPKLPCGVELDEVRLRQILLNVVGNAFKFTDTGQIKITVNCRANPEHSE 1270

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              D   SV++ G  I  D    +FN F  +  +  R+  G GLGL+I +  + + GG V 
Sbjct: 1271 KIDLKISVEDTGIGISPDNQTKIFNAFTQSEGQSNRKYGGTGLGLAITQRLVQMMGGTVH 1330

Query: 774  ISSS 777
            + S 
Sbjct: 1331 LQSQ 1334


>gi|150395841|ref|YP_001326308.1| histidine kinase [Sinorhizobium medicae WSM419]
 gi|150027356|gb|ABR59473.1| histidine kinase [Sinorhizobium medicae WSM419]
          Length = 525

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLV 624
           ++ K  F+  VS+ELR+PL  I+GF+D+L     G L N +Q +YV  I  S T LL++V
Sbjct: 237 NDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVV 296

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N +LD++ ++AG  +L      + + +   +  ++ +  E  +R+       +G   AD+
Sbjct: 297 NTMLDMSKIEAGRYELLREPFRVAEAIAACEAMLSHQAREKGVRLASRVTRSVGEINADQ 356

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           + + QI   ++ NA+ F+ +G  V + AAR+      +V + G  I  D  K +   FV 
Sbjct: 357 RAVQQILINLVGNAIKFTDRGGLVTVDAAREGALLKLTVSDTGIGIAADKLKMLGQPFVQ 416

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD----EGVTTINCRIPS 790
             +   RR  G GLGLS+V+    LHGG VSI S++    E V +I C + S
Sbjct: 417 IQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTEVVVSIPCDVSS 468


>gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1347

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 551  AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            AER   L   N  L +A   K+ F+ ++S+ELR+PL +I+  ++ L     G L  +Q +
Sbjct: 829  AERTAELHRANAELLRAARTKDEFLANMSHELRTPLNSILALSESLLEELYGPLRDQQQK 888

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             +  I AS   LL L+ND+LDLA ++A  ++L    +  +D+       +  +  +  I 
Sbjct: 889  AIRAIEASGRHLLALINDVLDLAKIEANRIELVKEVVAASDVCEASMALVKEQATKKQIH 948

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNN 726
            + +  D     FVAD +RL QI   +LSNA+ F+  G  V L+   D   G   F+V + 
Sbjct: 949  LSIQLDDPHARFVADPRRLKQILVNLLSNAVKFTPAGGAVSLQVTTDTTQGTIAFTVSDT 1008

Query: 727  GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  I E+    +F  FV   +    Q  G GLGL +V   + LHGG V + S
Sbjct: 1009 GIGIAEEDLSRLFQPFVQLDSGLSRQHEGTGLGLVLVRRLVELHGGKVEVES 1060


>gi|330873086|gb|EGH07235.1| two-component sensor/regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 576

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 140/279 (50%), Gaps = 30/279 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLDAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------- 714
              I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +         
Sbjct: 411 LQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVSIL 470

Query: 715 -----------DNGDF----IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
                        GD+      SV + G  I +     +F  F  + ++   +  G GLG
Sbjct: 471 DGDWPVHSVPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLG 530

Query: 758 LSIVESFINLHGGHVSISS-SDEG---VTTINCRIPSKE 792
           L++V+    LHGG V+++S  D G   V  +  R P+ E
Sbjct: 531 LAMVKQLTELHGGCVAVASVKDLGARFVVWLPIRPPATE 569


>gi|308271052|emb|CBX27662.1| hypothetical protein N47_H24840 [uncultured Desulfobacterium sp.]
          Length = 1019

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 131/254 (51%), Gaps = 15/254 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+R + +K   L  A + K+ F+ ++S+ELR+PL +I+  + LL  +K G+L+ K  ++ 
Sbjct: 312 AKRLIEQKARDLELASKYKSDFLTNMSHELRTPLNSILILSRLLSENKKGNLDQKNIEFA 371

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+ +   LL L+N+ LDLA V+AG M+ ++  + + DL + +K+       E  +   
Sbjct: 372 QTINGAGADLLKLINEALDLAKVEAGKMECSFEQLEIADLTDTLKRYFMAIAEEKGLIFT 431

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------------G 717
           +   DG    FV+DRQ++ QI   +LSNA  F+ KG+  +     DN             
Sbjct: 432 INQKDGIPSGFVSDRQKVEQIIKNLLSNAFKFTEKGTISLDVFRPDNTVDLTLYGLVNKN 491

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              FSV + G  IPED  +S+F  F        R+  G GLGL+I      L GG +++ 
Sbjct: 492 TIAFSVSDTGIGIPEDKKQSIFEAFQQADGTTSRKYGGTGLGLTISRKMAKLLGGEITLE 551

Query: 776 SSDEGVTTINCRIP 789
           +++   T     IP
Sbjct: 552 TTEGKGTVFTLYIP 565


>gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
 gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
          Length = 970

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 159/383 (41%), Gaps = 49/383 (12%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSL-------------------WKTEEN---RLSP 476
           T+D ++EG+A+FGPD R+KL N     L                   W+  +       P
Sbjct: 351 TLDSVAEGIALFGPDDRLKLLNRRGYDLLAIPRTAEEEQWHLIQILEWQIAQGHFEEFPP 410

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           GT ++       R  +E  G       +  F   R             VLE    P  + 
Sbjct: 411 GTPVQ-------RLIDEQYGGLGLKHSLPVFARHRAD---------GCVLEIRTYPSKDG 454

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T  T+ +VT+  R  RAL    EA    +  K  FV  +S+E+R+PL  ++G   LL  
Sbjct: 455 GTTRTYTDVTERERTARALETAKEAAEAGNRAKTEFVATMSHEIRTPLNGVLGMASLLSD 514

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L+ +Q  YV  I      LL++V+DILD + ++AG + L +     +++   V  
Sbjct: 515 TP---LDDRQRHYVGTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSVSD 571

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG----STVILK 711
            +  K  E  + I    D         D  RL Q+   ++ NA+ F+ +G       ++K
Sbjct: 572 ILEPKAAEKGLAITYSEDVDFPKRSCGDPNRLRQVLWNLVGNALKFTDEGWISIEATVVK 631

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
              D     +SV + G  IPE+    +F +F        RR  G GLGL+IV   +   G
Sbjct: 632 GP-DGPRLRYSVSDTGIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAFG 690

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S     +T    IP  E
Sbjct: 691 GELGVVSETGKGSTFWFEIPHVE 713


>gi|115376518|ref|ZP_01463751.1| two-component hybrid sensor and regulator, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366451|gb|EAU65453.1| two-component hybrid sensor and regulator, putative [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1090

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 25/347 (7%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++ +++GV +      I + NPA R L +  E           ++A   +   E  G+  
Sbjct: 292 VEAMADGVLLTDEQNAIVVINPAARRLLRVTEE----------VSALTGQMLEERLGFQP 341

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              I        + LQ  +EL  D  ++ ++ P+ +A+  L  V V       R +TE+ 
Sbjct: 342 SELIRGWEYSGSQMLQEEVELF-DRHIQCTVTPVNDARGTLKGVCVV-----LRDVTEQ- 394

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              +  +E K+ FV  VS+ELR+PLT+I G  DL+     G +N KQ +Y+     S+  
Sbjct: 395 ---KMLEERKDEFVSMVSHELRTPLTSISGALDLVLNFLAGDINEKQQRYLFMARESTEK 451

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +LV+D+LDLA    G +++N+    L++L+    +       E  +++ +        
Sbjct: 452 LNSLVDDLLDLAKFAKGRLRMNFELTYLDELVRRAAEKYGPAFQERRVKVLMTLPQHGLR 511

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCK 736
            +AD  R+ Q+ + +L+NA+ F+ +G  V L+    +   G    S  N+G  I E+  +
Sbjct: 512 VLADPSRVNQVLNNLLTNAVKFTPEGGEVRLELKATSALPGHVALSCWNSGEPIAEESLE 571

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +F+RF        R  RG GLGL+I    +  HGGH+    S EGV
Sbjct: 572 RIFDRFEQARTPSNRTVRGTGLGLAICRHIVEAHGGHIWCEPSTEGV 618


>gi|310822048|ref|YP_003954406.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395120|gb|ADO72579.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1097

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 25/347 (7%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++ +++GV +      I + NPA R L +  E           ++A   +   E  G+  
Sbjct: 299 VEAMADGVLLTDEQNAIVVINPAARRLLRVTEE----------VSALTGQMLEERLGFQP 348

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              I        + LQ  +EL  D  ++ ++ P+ +A+  L  V V       R +TE+ 
Sbjct: 349 SELIRGWEYSGSQMLQEEVELF-DRHIQCTVTPVNDARGTLKGVCVV-----LRDVTEQ- 401

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              +  +E K+ FV  VS+ELR+PLT+I G  DL+     G +N KQ +Y+     S+  
Sbjct: 402 ---KMLEERKDEFVSMVSHELRTPLTSISGALDLVLNFLAGDINEKQQRYLFMARESTEK 458

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +LV+D+LDLA    G +++N+    L++L+    +       E  +++ +        
Sbjct: 459 LNSLVDDLLDLAKFAKGRLRMNFELTYLDELVRRAAEKYGPAFQERRVKVLMTLPQHGLR 518

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCK 736
            +AD  R+ Q+ + +L+NA+ F+ +G  V L+    +   G    S  N+G  I E+  +
Sbjct: 519 VLADPSRVNQVLNNLLTNAVKFTPEGGEVRLELKATSALPGHVALSCWNSGEPIAEESLE 578

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +F+RF        R  RG GLGL+I    +  HGGH+    S EGV
Sbjct: 579 RIFDRFEQARTPSNRTVRGTGLGLAICRHIVEAHGGHIWCEPSTEGV 625


>gi|301310170|ref|ZP_07216109.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831744|gb|EFK62375.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 632

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 133/222 (59%), Gaps = 13/222 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++
Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +LL L++DILDLA +++G M L ++ + + +++NE+  S   KM  +N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDLKFADMNVKEVINEIVTSFRIKM-PDNVALIAPQDSPE 505

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
               +DR RL Q+ S  L+NA+ ++S+G   +  A    GD I FSV + G  + +++  
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCITL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776
            +F+RF    ++G   ++G GLGLSI E+ +N  GG + ++S
Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601


>gi|116749724|ref|YP_846411.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698788|gb|ABK17976.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 488

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 8/239 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L + +E+K  F  HVS+ELR+PLT I     LL     G L+S Q + +E +  +   
Sbjct: 241 EQLARLEELKADFTAHVSHELRTPLTAIREGIALLLEEIPGPLSSSQKEILEVVRGNGER 300

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L   ++ ILDL+ ++  +M+  Y+   L  L+ +  Q +     + NI ++ I  G L  
Sbjct: 301 LFVSISSILDLSRMEGEMMEYQYAPCDLQTLIEKSVQGLDPIARKKNIGVETIRTGNLPL 360

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFI-FSVKNNGSSIPED 733
            + D  R+ Q+   ++SNA+ F+ +G     +TV+ +  R+ G  +   V + G  IPE+
Sbjct: 361 LMLDESRMRQVIDNLMSNALKFTPEGGRISITTVLKRDDREKGRVVEVRVSDTGHGIPEE 420

Query: 734 MCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + VF RF  S  HRG+R +G GLGL+I    +  HGG +   +      TI   +P+
Sbjct: 421 DVEKVFGRFYRSPHHRGKRHQGTGLGLAIARHIVTAHGGRIWAENEPASGATIVFTLPA 479


>gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
 gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
          Length = 854

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 143/270 (52%), Gaps = 10/270 (3%)

Query: 529 SIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           S++P+    T   + +F++++D  +AE  L +   A   A+   + F+  +S+ELR+PLT
Sbjct: 239 SVVPVSIGGTGYFVESFIDLSDRKQAEEELLQAKIAAESANRSMSEFLATMSHELRTPLT 298

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIGF++L+     G  +    +++  IS S   LL+L+N ILDL+ ++AG M+L     
Sbjct: 299 AIIGFSELMLGGSTGEFDELNKKFLGNISTSGKHLLSLINSILDLSKIEAGKMELQSDYF 358

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704
            L D+ +  K  ++    + NI +    + + G FV ADR R  QI   ++SNA+ F+ K
Sbjct: 359 SLQDIFSNTKNILSPLALKKNISMDF--NVEPGFFVYADRTRFKQIMYNLVSNAVKFTQK 416

Query: 705 GSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           G +V +L    + G  + SV + G  I +D  K +F  F  + +    +  G GLGL + 
Sbjct: 417 GGSVEVLGIVSEKGVRV-SVSDTGIGISKDEIKQLFKPFKQIDSTLSRKYEGTGLGLVLS 475

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + F+ +HGG + + S     +T    +P K
Sbjct: 476 KKFVEMHGGRIWVESEPGKGSTFTFEVPVK 505


>gi|254423945|ref|ZP_05037663.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196191434|gb|EDX86398.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 935

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 137/252 (54%), Gaps = 20/252 (7%)

Query: 549 VRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           V  E  + E+ ++LR        AD  K  F+  +S+ELR+PLT IIG +  L     G 
Sbjct: 545 VSLESCVIERTQSLRDALSAATAADRTKVEFLSTMSHELRTPLTYIIGMSATLLRWSFGE 604

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT- 660
           L+ +Q  Y+E I+ S   LL ++NDIL+ A V++G   LN S   L++L+    +S+AT 
Sbjct: 605 LSERQRSYLETINRSGEHLLTVINDILEFAKVESGRSLLNVSNFPLSNLV----RSVATR 660

Query: 661 -----KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                K H+ ++ +  +   ++ +F AD +R+ QI S +++NA+ F+  G  + L+  ++
Sbjct: 661 YQEDAKNHDVSLSVDCVLSPEVENFRADSKRIEQILSNLVNNAIKFTPAGGEITLRVQKE 720

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               +  V++ G  IPE   K +F +F  + +  + Q  G GLGL++ +  + LH G + 
Sbjct: 721 LDSILLQVEDTGIGIPESQQKFMFEKFKQLESPFQRQYAGTGLGLAMTKHLVELHNGTIQ 780

Query: 774 -ISSSDEGVTTI 784
            IS+  +G T I
Sbjct: 781 VISTVGKGSTFI 792


>gi|307304331|ref|ZP_07584083.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306902799|gb|EFN33392.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 531

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 147/297 (49%), Gaps = 13/297 (4%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFV-----NVTDSVRAERALT 556
            D ER ++   LE  S    +++ I     PL +A+  L  +     +V++  R +    
Sbjct: 174 LDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAA 233

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615
            K      A++ K  F+  VS+ELR+PL  I+GF+D+L     G L N +Q +YV  I  
Sbjct: 234 AKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQ 293

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S T LL++VN +LD++ ++AG  +L      + + +   +  ++ +  E  +R+      
Sbjct: 294 SGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTR 353

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +G   AD++   QI   ++ NA+ F+ +G  V + AA +      +V + G  I  D  
Sbjct: 354 SVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGNMLKLTVSDTGIGIAADKL 413

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + +   FV   +   RR  G GLGLS+V+    LHGG VSI S++   T I   IPS
Sbjct: 414 QMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIPS 470


>gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 1133

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 137/635 (21%), Positives = 275/635 (43%), Gaps = 61/635 (9%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQKAIGE-- 239
           K  N +   + + + L   V+ RD    +++AN  Y     +  +E  G+   +  G   
Sbjct: 188 KSVNELDALRTVLEDLPVAVFVRDDKHRLIYANKYYETFSGRARSEYLGMTEHEMFGPEG 247

Query: 240 SRKLFKE-----------EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
           +  +++E           E++  M S+S         V+ +   + ++Y    V+ SF +
Sbjct: 248 AEPIYQENLLALRDGISVELESEMPSTSGHVYPVISRVNRVITADGRTY----VVGSFSD 303

Query: 289 AGIAIDVSKEITVN---DQLTHT--YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                +  K +  +   +++ H     IL +L + + I D +  + + N  F  +WE+  
Sbjct: 304 ISPLKEREKALIASRKQEEVLHRDIESILRSLPIGVLILDNDHRILYVNDEFYSIWELPR 363

Query: 344 -------AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
                   F+     N EL  +     + PE+L    +++++F   +  E  +  W    
Sbjct: 364 EDRFDGRPFIDVIRRNHELGRY--DGTRTPEEL--YAFRKHLFEA-EEPEPIEVGWAGGK 418

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQ--GETIDH----LSEGVAV 449
                    SN R   +  + +++   + E + + T   ++  GE +      +S+G+A+
Sbjct: 419 SVIFDSRRISNDR--ILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLAI 476

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              DG IK+SN A   + +   + +  G     +   C+   +  D  D       +   
Sbjct: 477 V-QDGIIKMSNDAMADILQIPPHYIEAGQGWLGMFEFCAARGDFHDAADEILQGWRANIA 535

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            R+ +     +  +  +            +  F +VT+    E  L +       AD  K
Sbjct: 536 ARQPISTVFHVGGERWVNMEATVSSGQHWVALFTDVTELKSREEELRQLLSRAEAADRAK 595

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+P+  ++G  +LL  +   +L+++Q  +++ I  S   LL ++NDILD
Sbjct: 596 SEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFIDIIVKSGNALLTIINDILD 652

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLL 688
            + +DAG MKL  +   L + + +V   +++   E NI + V +   L  + + D  R  
Sbjct: 653 FSKIDAGQMKLRKAAFDLVEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFR 712

Query: 689 QIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFV 743
           QI + ++ NA+ F+ +G   +    +AA   G+ I S++  + G  IP +   SVF +F 
Sbjct: 713 QIVTNLVGNAVKFTERGHVFVDVGFQAAA-GGEIIASIRIEDTGIGIPREKLDSVFEKFS 771

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  RR  G GLGL+I    ++L GG+++  S
Sbjct: 772 QVDASSTRRHEGTGLGLAITAGLVDLFGGYINAES 806


>gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
 gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
          Length = 1297

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 136/268 (50%), Gaps = 15/268 (5%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEA----------LRKADEIKNSFVQHVSYELRSPL 584
            N Q +  F + TD    + A+ E+ +A          L +A+ +K+ F+  VS+ELRSPL
Sbjct: 878  NGQMVKWFGSCTDIHDQKLAIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPL 937

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              I+G+  LLK+ KL +L  K +Q +E I  ++ +   L++D+LD++ +  G + LN  T
Sbjct: 938  NPILGWAKLLKSRKLDAL--KTNQALEVIERNAKLQAGLIDDLLDVSRILRGKLSLNVCT 995

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            + L   +    +++       +I I+      +     D  RL Q+   +LSNA+ F+ +
Sbjct: 996  VDLVTTIEAALETVRLTAESKSIHIQTDLTASVCRVEGDPNRLQQVVWNLLSNAVKFTPE 1055

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
            G  + +K  R        V++ G  I  D    VF RF        R+  G+GLGL+IV 
Sbjct: 1056 GGEIEVKLERVGSLAHIQVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVR 1115

Query: 763  SFINLHGGHVSISSSDEGV-TTINCRIP 789
              + LHGG V ++S  EG+ TT   ++P
Sbjct: 1116 HLVELHGGSVQVTSPGEGLGTTFTVKLP 1143


>gi|189347233|ref|YP_001943762.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
 gi|189341380|gb|ACD90783.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
          Length = 608

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 164/347 (47%), Gaps = 48/347 (13%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI---------AATCSRYYNESDGW 497
           VAVF PDG ++++  +    +      + PG+++ ++         A T  +      G 
Sbjct: 278 VAVFDPDGLVEIATESAERYFG-----MKPGSNVHDLGYPWMEELLAGTFRKGSGADSGK 332

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVR 550
           +   + I  F D R+              + +I+P+P+         T L F        
Sbjct: 333 N--KSFIQHFADNREIF-----------FQPTIVPIPSGHPAEESSGTALIF-------- 371

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             R +T+ +E L    E+K S +  VS++LR+PLT +     LL     G LN +Q+  +
Sbjct: 372 --RDVTQVHEQL----ELKRSVIATVSHQLRTPLTALRMSIHLLLEEHTGHLNGQQADLL 425

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                 S  L+++++D+LD+  +++G   L+ S +    +  E  +       +  + I+
Sbjct: 426 LAAREESERLVHILDDLLDINRIESGKAHLDLSALSPCRIGAEGMEPFLLPCRDQGVSIR 485

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 L   VADR+ L+ +F+ +LSNA+ F+S G ++ L A  D+G+  FS+++ G+ I
Sbjct: 486 NTIPETLPDIVADRESLMHVFANLLSNALRFTSAGGSITLNACEDDGNIRFSIEDTGTGI 545

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +  + +F  F     + ++ G+GLGLSIV+  +  HGG V   S+
Sbjct: 546 DAEHMEHLFEPFYRVPGQREKNGIGLGLSIVKEIVEAHGGSVDAEST 592


>gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 1081

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D    E  L + N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ ++    G+L 
Sbjct: 676 DISDRRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLG 735

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q Q ++ I  S++ LL L+NDILDLA ++AG MKL+ +   +  L       I  +  
Sbjct: 736 DRQKQALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAF 795

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDN 716
           +  I I V     L     D +RL Q+   +L+NA+ F+     + L+          D 
Sbjct: 796 KKGISINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDK 855

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               F+V + G  I E+    +F  F  + +A   Q  G GLGLS+V+  + +HGG V++
Sbjct: 856 SRVRFAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNV 915

Query: 775 SS 776
            S
Sbjct: 916 IS 917


>gi|197106173|ref|YP_002131550.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1]
 gi|196479593|gb|ACG79121.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1]
          Length = 553

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 10/255 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNS----FVQHVSYELRSPLTNIIGFTDLLKTS 597
           F  V D+ RA+RA   + E  R + E +N+    F+ ++S+ELR+PL  I+GF+D+++  
Sbjct: 284 FAAVRDA-RAQRAREHELEKARISAEQQNAGKSRFLANMSHELRTPLNAIMGFSDIMRQR 342

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G +  +  +Y E I  S + LL L+ND+LD++ ++A   +L        D +  V + 
Sbjct: 343 LFGPMGDRYGEYAELIHESGSHLLELINDVLDMSKIEAERFELAREDFDARDAVGAVLRL 402

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +     + ++ +   +     ADR+ + QI   ++SNA+ F+ +G TV + A     
Sbjct: 403 MRGQAERAGVTLRAVMPPEPLEAEADRRAVKQITLNLISNALKFTPRGGTVTVTAQGAGE 462

Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                V ++G  I P D+ +    R    A   Q+R  G GLGLS+V +F  LHGG ++I
Sbjct: 463 TLELIVADSGVGIAPADLER--LGRPFEQAGDAQQRAAGSGLGLSLVRAFAALHGGEMAI 520

Query: 775 SSSDEGVTTINCRIP 789
            S     TT+  R+P
Sbjct: 521 ESGVGEGTTVTVRMP 535


>gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
          Length = 755

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  F+  VS+ELR+P+T+I G   L+     G L  +  + +     ++  L+ L+N
Sbjct: 266 DRMKTEFIATVSHELRTPMTSIKGALGLVLGGAAGDLPPEARELLTIARNNTDRLIRLIN 325

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILD++ ++AG M++  + +   D++    + +     + NI +       L   +AD  
Sbjct: 326 DILDISRIEAGKMEIRRAPLSPADVVRRAVEEMNAFARQRNITLTTDVPEGLARVMADAD 385

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF-- 742
           RL Q+   ++SNA+ FS +GS V+++ AR+ GD + F V + G  IP D    +F RF  
Sbjct: 386 RLHQVLDNLISNAIKFSPQGSEVLIR-ARETGDGVRFDVIDRGPGIPADQTGLIFERFYR 444

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V NA   +  G GLGL+I ++ +  HGG + + S+    +T +  IP
Sbjct: 445 VDNAASRKTGGTGLGLTICKAIVEEHGGQIWVESALGEGSTFSFTIP 491


>gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 883

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 2/229 (0%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD +K   +   S+ELR+P+T+I GF D+L     G +++ Q + +  I  +   L+ L+
Sbjct: 651 ADRLKTELMATASHELRTPMTSIRGFVDMLMLGTFGEVSATQREPLRVIKNNVVRLVVLI 710

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +++LD++ V+AG  +L    + L ++L +V   + ++  E  I + V     L   VADR
Sbjct: 711 DELLDMSRVEAGEARLRREELDLAEVLRDVIAVLTSQFREREIELHVDFQEGLPHVVADR 770

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           QR+ QI   ++ NA  ++ +G TV +     NG+    V++ G  I E+    +F  F  
Sbjct: 771 QRIEQIAVNLIGNACKYTPRGGTVWIGMHNGNGELRVDVRDTGVGISEEAKSHIFTPFYR 830

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             N  R +  G GLGLSI +  + LHGG +   S     +T +  +P K
Sbjct: 831 ADNPLRDEVGGTGLGLSITQRLVELHGGRIWFESEVNAGSTFSFVLPIK 879


>gi|317480271|ref|ZP_07939376.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316903564|gb|EFV25413.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 867

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 132/240 (55%), Gaps = 7/240 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610
           E AL    +   +AD++K++F+ ++S+E+R+PL  I+GF+DLLK   L + + ++  Q+V
Sbjct: 629 EEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLDAFSPEEVKQFV 686

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669
           E I+ + T+LL L+NDILDL+ +++G M   +    L  ++ EV +S    M  +  +RI
Sbjct: 687 ETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRI 746

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + I +G+    + D  RL Q+ + +++NA  F+  GS          G     V++ GS 
Sbjct: 747 E-IPEGEDKLVITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSG 805

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ED  K +F RF       Q  G GLGLSI ++ ++   G +S+SS     T     IP
Sbjct: 806 ISEDAQKHIFERFYKEDSFTQ--GAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863


>gi|265765367|ref|ZP_06093642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254751|gb|EEZ26185.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 389

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 133/250 (53%), Gaps = 5/250 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + +++T     E  LT   E   +A+ +K++ + ++++E+R+PL  I+GF  LL    + 
Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS---II 195

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q +Y+  I +++  LL L+ND++DL+ +++G+M +  S +VL+ L+ E++ +   
Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K   +N+ +    +        DR RL+QI   +L NA+ F++KG+       ++NG   
Sbjct: 256 KAETDNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIR 315

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           F V + G  IP D  + +F RFV      Q  G+GLGLS+ +  I    G + + S    
Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 781 VTTINCRIPS 790
            +T    IP+
Sbjct: 374 GSTFWFTIPN 383


>gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 963

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 209/488 (42%), Gaps = 72/488 (14%)

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKD 390
           N+  +++W I  A L T   + ++L  +      PE    K     +  +Y+  + + +D
Sbjct: 342 NQRVIDMWRIPHALLETG-DDAQILTHVIDQLADPEPFVRK-----VRELYEHPDASSRD 395

Query: 391 TWHLPNGQTL----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH---- 442
           T    +G+      H     +   G +W F ++T Q   E     L +   E ++     
Sbjct: 396 TLLFRDGRVFARFSHPQRVGSAVVGRVWSFLDVTDQTRAEQNVRELSRQLSEELERSEQQ 455

Query: 443 ----------LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                     + + V +  P G     NP F  +          G  +  I  T    Y 
Sbjct: 456 RYLLQCLLSAIPDAVWMKDPQGVFLSCNPEFAQML---------GQDVDRIIGTSDDDYF 506

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
             +  + F A      D+R++ + T  +  +  ++Y    + +A+ +L +  V  +VRAE
Sbjct: 507 PPEVAEAFRA------DDRRAAESTTPIRCEEWIDY----VSDARRVL-WATVKSAVRAE 555

Query: 553 RA---------------------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                                  L E   A  +A E K+ F+ H+S+ELR+PL  IIGF+
Sbjct: 556 DGRLLGVLGIARDITSQHTVLTELEEARNAALQASEAKSRFLAHMSHELRTPLNAIIGFS 615

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L    L  L ++Q   V +I  S   LL L+NDILDLA +++G  +LN   I L+ L+
Sbjct: 616 QMLDMGALDPLTAQQQTAVSHIRDSGRHLLELINDILDLARIESGQSELNLDAIPLDPLI 675

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +EV     ++   +  RI +   G+ G  V ADR RL Q+   + SNA+ ++  G  V +
Sbjct: 676 DEVMA--LSRPAADGRRICIDRGGEAGLHVYADRTRLRQVLLNLTSNAIKYNRLGGRVTI 733

Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768
                 G+++   V + G+ I E + + +F  F    A +    G G+GL I +  I + 
Sbjct: 734 D-VEPAGEWVRIRVSDTGAGIDESLREEIFQPFQRLGAEKTAIEGTGIGLIICKHLIEVM 792

Query: 769 GGHVSISS 776
           GG +   S
Sbjct: 793 GGSIDFDS 800


>gi|295087981|emb|CBK69504.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 503

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 145/262 (55%), Gaps = 12/262 (4%)

Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579
           V+E    P+ N Q  +    + V D    +  + E   A  +A   D++K++F+ ++S+E
Sbjct: 88  VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHE 147

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL  ++      ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 148 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 204

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 205 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 264

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG T+ +   + +GD    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 265 KYTSKG-TIEMGYEKIDGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 321

Query: 760 IVESFINLHGGHVSISSS-DEG 780
           I ++ +    G +   S  D+G
Sbjct: 322 ICKAIVEACRGEIGFESEFDKG 343


>gi|257790765|ref|YP_003181371.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257474662|gb|ACV54982.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 572

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN F   +S+ELR+PLT+I+ F  +L+   + SL++K    VE I A++T+LLN+VN+IL
Sbjct: 335 KNEFFAIMSHELRTPLTSILAFARILR--GVDSLDAKTRSAVEEIEANATLLLNMVNNIL 392

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            ++  +A   +L    +   DLL  +++S+        I +   +D  +   +AD ++L 
Sbjct: 393 TISKAEAHKNELVVEPVDFVDLLGFIRKSLEPVAKNKGIALTAKTDADVPVSMADWEKLR 452

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           +I   ++ NA+ ++  G  V ++A  D    + SV ++G  I E   + +F R+      
Sbjct: 453 RIVENLVDNAIKYTHVGGRVDVRATFDGACIVVSVADDGMGIDEADQEGIFERYRQAGQS 512

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             R  RG GLGL++V+    LHGG VS++S+ +  +T   RIP
Sbjct: 513 PNRRYRGTGLGLAVVKELAELHGGSVSVASARKLGSTFTVRIP 555


>gi|307319436|ref|ZP_07598863.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306894808|gb|EFN25567.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 531

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 147/297 (49%), Gaps = 13/297 (4%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFV-----NVTDSVRAERALT 556
            D ER ++   LE  S    +++ I     PL +A+  L  +     +V++  R +    
Sbjct: 174 LDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAA 233

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615
            K      A++ K  F+  VS+ELR+PL  I+GF+D+L     G L N +Q +YV  I  
Sbjct: 234 AKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQ 293

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S T LL++VN +LD++ ++AG  +L      + + +   +  ++ +  E  +R+      
Sbjct: 294 SGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTR 353

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +G   AD++   QI   ++ NA+ F+ +G  V + AA +      +V + G  I  D  
Sbjct: 354 SVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGNMLKLTVSDTGIGIAADKL 413

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + +   FV   +   RR  G GLGLS+V+    LHGG VSI S++   T I   IPS
Sbjct: 414 QMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIPS 470


>gi|15964755|ref|NP_385108.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|7531256|sp|Q52969|Y1002_RHIME RecName: Full=Uncharacterized sensor-like histidine kinase R01002
 gi|15073933|emb|CAC45574.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021]
          Length = 525

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 147/297 (49%), Gaps = 13/297 (4%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFV-----NVTDSVRAERALT 556
            D ER ++   LE  S    +++ I     PL +A+  L  +     +V++  R +    
Sbjct: 168 LDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAA 227

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615
            K      A++ K  F+  VS+ELR+PL  I+GF+D+L     G L N +Q +YV  I  
Sbjct: 228 AKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQ 287

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S T LL++VN +LD++ ++AG  +L      + + +   +  ++ +  E  +R+      
Sbjct: 288 SGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTR 347

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +G   AD++   QI   ++ NA+ F+ +G  V + AA +      +V + G  I  D  
Sbjct: 348 SVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGNMLKLTVSDTGIGIAADKL 407

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + +   FV   +   RR  G GLGLS+V+    LHGG VSI S++   T I   IPS
Sbjct: 408 QMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIPS 464


>gi|298481494|ref|ZP_06999686.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272358|gb|EFI13927.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 631

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 133/243 (54%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L  ++      +  +Y
Sbjct: 393 KAYSRLSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTEDPV---EMREY 449

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILDL+ ++AG      S+I +N  + E++QS+  ++  +++ +
Sbjct: 450 ADIIETNTDLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTL 509

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                     F  D+ RL+Q+ +  ++NA+ F+  G+  +     D     F V + G  
Sbjct: 510 AFTERLPGCLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCG 569

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C+ VF RFV   +    +G GLGLSI  + +   GG + + S +   +T    +P
Sbjct: 570 MSNEQCEHVFERFVK--YNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLP 627

Query: 790 SKE 792
            ++
Sbjct: 628 YRK 630


>gi|270296516|ref|ZP_06202716.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273920|gb|EFA19782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 867

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 132/240 (55%), Gaps = 7/240 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610
           E AL    +   +AD++K++F+ ++S+E+R+PL  I+GF+DLLK   L + + ++  Q+V
Sbjct: 629 EEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLDAFSPEEVKQFV 686

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669
           E I+ + T+LL L+NDILDL+ +++G M   +    L  ++ EV +S    M  +  +RI
Sbjct: 687 ETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRI 746

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + I +G+    + D  RL Q+ + +++NA  F+  GS          G     V++ GS 
Sbjct: 747 E-IPEGEDKLVITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSG 805

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ED  K +F RF       Q  G GLGLSI ++ ++   G +S+SS     T     IP
Sbjct: 806 ISEDAQKHIFERFYKEDSFTQ--GAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863


>gi|160891792|ref|ZP_02072795.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
 gi|156858270|gb|EDO51701.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
          Length = 867

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 132/240 (55%), Gaps = 7/240 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610
           E AL    +   +AD++K++F+ ++S+E+R+PL  I+GF+DLLK   L + + ++  Q+V
Sbjct: 629 EEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLDAFSPEEVKQFV 686

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669
           E I+ + T+LL L+NDILDL+ +++G M   +    L  ++ EV +S    M  +  +RI
Sbjct: 687 ETININCTLLLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRI 746

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + I +G+    + D  RL Q+ + +++NA  F+  GS          G     V++ GS 
Sbjct: 747 E-IPEGEDKLVITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSG 805

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ED  K +F RF       Q  G GLGLSI ++ ++   G +S+SS     T     IP
Sbjct: 806 ISEDAQKHIFERFYKEDSFTQ--GAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863


>gi|298482966|ref|ZP_07001148.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270938|gb|EFI12517.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 660

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 145/262 (55%), Gaps = 12/262 (4%)

Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579
           V+E    P+ N Q  +    + V D    +  + E   A  +A   D++K++F+ ++S+E
Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHE 304

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL  ++      ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 305 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 362 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 421

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG T+ +   + +GD    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 422 KYTSKG-TIEMGYEKIDGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478

Query: 760 IVESFINLHGGHVSISSS-DEG 780
           I ++ +    G +   S  D+G
Sbjct: 479 ICKAIVEACRGEIGFESEFDKG 500


>gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
 gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
          Length = 631

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L E  E L++ D +K+  +  VS+ELR+PLT+I G+ +L+    +G LN  Q + +E 
Sbjct: 393 KELEESYEKLKEVDRLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNENQRRCLEI 452

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              +   L  L++++LDL+ +++G +K +   I + D++NEV  S+     E NI +K  
Sbjct: 453 AKNNIDRLKRLIDNMLDLSKIESGAIKFDIKDIKVKDMINEVLNSLQPLTKEKNIEVKCD 512

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +  L + V D+ R++Q+   ++ NA+ FS     + + A RD       +K+ G  IP+
Sbjct: 513 IEDNLTAKV-DKDRIIQVLINLIENAIKFSPVKGVIEIHAFRDKNYAHIIIKDYGPGIPK 571

Query: 733 DMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              + +F++F   N  + +R G GLGL+I +S I  HGG + + S
Sbjct: 572 KDLERIFDKFYQVNFPKIKRDGAGLGLAICKSIIEAHGGKIWVES 616


>gi|160899265|ref|YP_001564847.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160364849|gb|ABX36462.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1177

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 131/245 (53%), Gaps = 5/245 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RA+ ALT+K   L  A + K+ F+ ++S+ELR+PL + +    LL  +K G+L + Q +
Sbjct: 456 LRAQGALTDKAHELELASQYKSEFLANMSHELRTPLNSTLILAKLLADNKPGNLQADQVK 515

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I A+ + LL L+NDILDL+ ++AG + +    + +   L  + + +     E  + 
Sbjct: 516 YAQTIHAAGSDLLALINDILDLSKIEAGQVSVLVEPMTIATALQALMEPLRPIAREKGLE 575

Query: 669 IK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
           +   +  G   S   D  RL Q+   +LSNA+ F++KGS V L+ +R  G  + F+V++ 
Sbjct: 576 LTWTVDPGVPASMQTDPMRLAQVLKNLLSNALKFTAKGS-VGLQVSRVPGGMLAFAVRDT 634

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E   + +F+ F        R+  G GLGLSI      L GG +++SS+    +  
Sbjct: 635 GIGIAEQQQQFIFDAFRQADGSTHRKFGGTGLGLSISRDLAGLLGGTLTVSSTPGQGSVF 694

Query: 785 NCRIP 789
              +P
Sbjct: 695 TLTVP 699


>gi|13475462|ref|NP_107026.1| two component histidine protein kinase [Mesorhizobium loti
            MAFF303099]
 gi|14026214|dbj|BAB52812.1| two component histidine protein kinase [Mesorhizobium loti
            MAFF303099]
          Length = 1348

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 136/263 (51%), Gaps = 5/263 (1%)

Query: 533  LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            LPN       V ++T   RAE  LT+      +A  +K  F+  +S+E+R+PL  IIGF+
Sbjct: 1080 LPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSLKTDFLARISHEIRTPLNAIIGFS 1139

Query: 592  DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L+   K G + N +   Y+  I+ S   +L+LVND+LD++ ++AG  ++ Y  + LND 
Sbjct: 1140 ELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDT 1199

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            L E    +  + +   + I+     +L   VAD + + QI   ILSNA+ ++  G  VI+
Sbjct: 1200 LAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIV 1259

Query: 711  KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
              A + +GD +  V++ G  + +   +     F  ++   RG+  G GLGL + ++ +  
Sbjct: 1260 STAYETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEA 1319

Query: 768  HGGHVSISSSDEGVTTINCRIPS 790
            +    +I+S+    T +    PS
Sbjct: 1320 NRARFTINSTPGEGTLVEVAFPS 1342


>gi|254438509|ref|ZP_05052003.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198253955|gb|EDY78269.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 477

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 2/237 (0%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +VN  + +   + + E+NE  + A E+K+ F+  VS+ELR+PLT+IIG  +L+K    G 
Sbjct: 201 YVNQQERLEQMKLIQEENERTKAALEVKSQFLSTVSHELRTPLTSIIGSLELIKADPRGL 260

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L       +   + ++  L  L++D+LDL  ++AG M  ++  +  NDL+ E  +S A  
Sbjct: 261 LPDNLKPMIGIAARNAQRLAALIDDLLDLQKIEAGEMAFHFKPVDANDLVYEAVESTAGY 320

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  I +     G+      DR RL+Q+ S +LSNA+ FS KG  V ++    +     
Sbjct: 321 ASKLGIHVTTAPCGEDCQIAGDRNRLVQVMSNLLSNALKFSDKGGAVKVRVETLSTRIRI 380

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           SV + G  IP      VF +F  V ++   +  G GLGL+I +  I  H G V   S
Sbjct: 381 SVHDEGVGIPRGAKDCVFGKFSQVDSSDARKVGGTGLGLNITKQIIGRHNGTVDYVS 437


>gi|160887157|ref|ZP_02068160.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483]
 gi|156107568|gb|EDO09313.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483]
          Length = 654

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 129/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+G +++L   +      + S+Y
Sbjct: 416 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGLSNMLPHVEN---REEMSEY 472

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 473 ADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTF 532

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +      +   D+ RL+Q+ +  + NA+ F+  G+  +     D+    F V + G  
Sbjct: 533 TFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCG 592

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +    T    +P
Sbjct: 593 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGATFWFTLP 650

Query: 790 SKE 792
            ++
Sbjct: 651 YRQ 653


>gi|309790727|ref|ZP_07685276.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227218|gb|EFO80897.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 1050

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 10/246 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M+   ++T    AERAL +  EA   AD  K++F+ H+S+E+R+PLT IIG + LL  S 
Sbjct: 510 MVLVRDITQQKVAERALVQAKEAAETADRAKSTFLAHISHEIRTPLTAIIGMSSLLLESP 569

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN +Q +  + I+A    LL+L+ DILD++ ++AG + L      L  +       +
Sbjct: 570 ---LNPEQYENAQIINAGGKTLLSLIGDILDVSKIEAGQLDLVMQPFDLRAVCRLALDLV 626

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA---A 713
               H+  +R+ + I+     S + D  RL Q+   +L NA+ F+ +G   +I++    A
Sbjct: 627 QQSAHDKRLRLNLQITPDLPASLIGDSGRLRQVLVNLLFNAVKFTEQGVVELIVRGHFQA 686

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
            +       V + G  IP D  + +F  FV   H    Q  G GLGL+I +  + L GG 
Sbjct: 687 EERYHVEIIVHDTGVGIPADQIEQIFKPFVQIDHHMTEQTPGSGLGLTISQQLVELMGGT 746

Query: 772 VSISSS 777
           + +SS+
Sbjct: 747 LEVSST 752


>gi|170734548|ref|YP_001773662.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820586|gb|ACA95167.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 768

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 133/249 (53%), Gaps = 11/249 (4%)

Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +RA+R+L    +A  +AD    +K+  +  VS+ELR+PL  I G+ ++L+ +   +L   
Sbjct: 371 LRAQRSLQGARDARDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTGDHAL--- 427

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q Q V+ I  S+  L  +V DILD +++  G ++L+ + + +  L ++   +  T     
Sbjct: 428 QHQAVDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFSDQVGTFQTAASSA 487

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I ++   D        D +RL Q+ S ++SNA+ F+  G +V +  ARD G  + +V +
Sbjct: 488 GILLEFDCDASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLARDGGHAVLTVAD 547

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGV 781
            G  I  +    VF+ F    ++    RRG+GLGLSIV     LHGG V+++S+  D G 
Sbjct: 548 TGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGSVTVASAGRDRG- 606

Query: 782 TTINCRIPS 790
           TT    +P+
Sbjct: 607 TTFTVTLPA 615


>gi|253563936|ref|ZP_04841393.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947712|gb|EES87994.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 389

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 133/250 (53%), Gaps = 5/250 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + +++T     E  LT   E   +A+ +K++ + ++++E+R+PL  I+GF  LL    + 
Sbjct: 139 SLMSITRRKVMEEELTAAKEKAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS---II 195

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q +Y+  I +++  LL L+ND++DL+ +++G+M +  S +VL+ L+ E++ +   
Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVP 255

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K   +N+ +    +        DR RL+QI   +L NA+ F++KG+       ++NG   
Sbjct: 256 KAETDNLVLAWDREQSNAHIYTDRDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIR 315

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           F V + G  IP D  + +F RFV      Q  G+GLGLS+ +  I    G + + S    
Sbjct: 316 FYVTDTGCGIPNDKKEVIFERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGE 373

Query: 781 VTTINCRIPS 790
            +T    IP+
Sbjct: 374 GSTFWFTIPN 383


>gi|330501096|ref|YP_004377965.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328915382|gb|AEB56213.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 1160

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 127/245 (51%), Gaps = 3/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  L E+ E L++A   K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q ++
Sbjct: 469 RIQAQLEERAEELQRASRYKSEFLANMSHELRTPLNSSLILAKLLAENGKGNLDDEQVKF 528

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I ++   LLNL+NDILD+A V+AG +++      L  +L  ++        E  +  
Sbjct: 529 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPERTPLASMLESLRDVFVPLAGERGLSF 588

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++    +L   +  DRQR  QI   +LSNA  F+ +G   +  + +D+    F+V++ G 
Sbjct: 589 QIEEQRELPQVLFTDRQRAEQILRNLLSNAFKFTDRGGVTLSVSRQDDHYLAFAVRDTGI 648

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D  +++F  F        RR  G GLGLSI      L GG +++SS     +T   
Sbjct: 649 GIAADQQEAIFEAFRQADGTTNRRYSGTGLGLSISRDLAGLLGGSITVSSVPGEGSTFTL 708

Query: 787 RIPSK 791
            +P +
Sbjct: 709 LLPER 713


>gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1260

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 137/260 (52%), Gaps = 17/260 (6%)

Query: 544 NVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +++D  +A   L +  E LR       KA   K+ F+  +S+E+R+P+  I+G  ++L+ 
Sbjct: 360 DISDRKKASELLRQHAEDLRVAKDQADKATRSKSEFLARMSHEIRTPMNAILGMAEMLQE 419

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   SLN  Q +YV+  S++  +LL ++NDILD + ++ G +KL      L +L+++V +
Sbjct: 420 T---SLNEDQQEYVKTFSSAGELLLGIINDILDFSKIEVGQIKLESIPFNLRELVDDVNK 476

Query: 657 SIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAA 713
               +  E  +R+ K +S+G    ++ D  R+ QI   ++ NA+ F+S G     + ++ 
Sbjct: 477 LFVYRAEEKALRLEKKVSEGLAQRYIGDPTRIRQIIINLVGNALKFTSVGGVTMSVTESV 536

Query: 714 RDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
            D+G    +F+VK+ G  IP+    +VF  F        R   G GLGL+I +  + L G
Sbjct: 537 MDDGAPCCLFAVKDTGIGIPKSKLGTVFESFAQADSSTTREFGGTGLGLAISKKLVELMG 596

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S     TT   ++P
Sbjct: 597 GQIWVESEPGQGTTFFFKLP 616


>gi|134299413|ref|YP_001112909.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052113|gb|ABO50084.1| GAF sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1]
          Length = 1021

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 123/215 (57%), Gaps = 7/215 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K+ FV  VS+ELR+PL++I+GF++LL   KL      +++Y + I   +  L +L
Sbjct: 607 EVDRMKSEFVSTVSHELRTPLSSILGFSELLLIKKLSE--EARTKYTKTIHKEAKRLTDL 664

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VND LDL  ++ G    +    +  DLL EV +S A    +++I ++ +    +    AD
Sbjct: 665 VNDFLDLQRMELGKQVYDKEDFIALDLLAEVVESFAASGVDHDITLQTVERFFIN---AD 721

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           ++R+ Q+   +LSNA+ FS KG+ + L    D     F +K+ G  IP+D+  ++F++F 
Sbjct: 722 KERVTQVLINLLSNAVKFSPKGTKITLGVTPDEEYAKFFIKDQGLGIPKDVQDNLFSKFY 781

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V N+ R +  G GLGLSI +  +  HGG + + S
Sbjct: 782 RVDNSDRRKIGGTGLGLSICKEIVEAHGGKIWVES 816


>gi|325280822|ref|YP_004253364.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312631|gb|ADY33184.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
          Length = 936

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 132/235 (56%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+ L E  E   ++D +K++F+ ++S+E+R+PL  I+GF+DLL  S      
Sbjct: 681 DVTELKETEQRLIEAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSDLLAES---DDR 737

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y++ +  ++ +LL L++DILDL+ ++AG  K     + +  L NE+ +S + K+ 
Sbjct: 738 EERFGYLKIVQENNELLLQLISDILDLSKIEAGTFKFINDRVNVYQLCNEIVRSYSIKIK 797

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            + +++       +    +D+ R++Q+ S  ++NA+ F+S+G+  +      N +    V
Sbjct: 798 NHQVKLIFDEQSPVYYITSDKNRVIQVLSNFINNALKFTSQGTITLGYELLPNHELKLYV 857

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  I E+  K +F+RFV      Q  G GLGLSI +S +   GG + ++S +
Sbjct: 858 CDTGQGIAEEKQKVIFDRFVKLNTFVQ--GTGLGLSICKSLVKQMGGQIGVNSKE 910


>gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 664

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+  + E  LTE   A   A++ K+ F+  +S+ELR+PL  I+GF+++L     G L
Sbjct: 399 VDITEHKQLEVKLTEALAAAEAANQAKDQFLAAMSHELRTPLNAIMGFSEVLLDQHFGPL 458

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N KQ  YV  I  S+  LL ++ND+LDLA ++AG       T+ +  LL +    I  + 
Sbjct: 459 NDKQQVYVNDILDSARHLLEIINDVLDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRA 518

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
              NI +++  D  +   V  D +R  QI   +LSNA+ F+  G  + ++  RD G+++ 
Sbjct: 519 AAKNIAVELAVDAGVPPQVQVDVRRFKQIMYNLLSNAVKFTPDGGAIKVE-CRDAGEWLE 577

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV++ G  I     + +F  F  VS     +  G GLGL+I    + LHGG + +  S+
Sbjct: 578 ISVEDTGIGIAATHAEHIFEPFYQVSGNLTAKTPGTGLGLAITRQLVELHGGRIWLERSE 637

Query: 779 EG 780
            G
Sbjct: 638 PG 639


>gi|284046954|ref|YP_003397294.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283951175|gb|ADB53919.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 1010

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +K  A  +AD +KN F   VS+ELR+PLT+I+G+ +L+   ++G +N +Q++++  + 
Sbjct: 746 VAQKRAAEAEADRLKNEFFALVSHELRTPLTSIVGYVELVLEGEVGEVNDEQARFLGIVE 805

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   L  LV D+L +A V+AG + L +    L  ++ +       +  +  + +   ++
Sbjct: 806 RNGKRLQRLVGDLLFVAQVEAGTLNLEHGDATLEAIVRDAVDGARPRAEQVGVTVAAETE 865

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +     D  RL Q+   ++SNA+ F+  G  V +    D  +   +V + G  IP D 
Sbjct: 866 -PVPPIRGDADRLGQLVDNLISNALKFTPSGGDVTVTLRIDGDEVALAVADTGIGIPADE 924

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF   S A  G+  G+GLGLSI ++    HGG + + S     TT    +P
Sbjct: 925 QARLFDRFFRASTAVEGEIPGIGLGLSICQAIAEGHGGRIEVESEVGRGTTFRVVLP 981


>gi|256419624|ref|YP_003120277.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256034532|gb|ACU58076.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 732

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 148/271 (54%), Gaps = 22/271 (8%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIG 589
           L  A  ML FV ++   R ++ + E + + +K  EI   K +F+ ++S+E+R+PL  I+G
Sbjct: 194 LMTAAGMLWFV-MSRIRRQQQLILELDRSEKKIREIAMIKENFMTNMSHEIRTPLNAILG 252

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           FT+LLK+ K   L+   +++V  I  +   LL ++NDILDL+ ++AG++++  +   +  
Sbjct: 253 FTNLLKSRK---LDDSSTEFVGSIQKAGENLLTIINDILDLSKIEAGMVRIESNPFSVRG 309

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGS-----FVADRQRLLQIFSKILSNAMDFSSK 704
           LL+ ++   + K+ E     K++  G++ S      + D  RL Q+   ++ NA+ F+ K
Sbjct: 310 LLHSIQTLFSEKVKEK----KLVLQGEIASDVPDTLIGDATRLTQVLVNLIGNALKFTEK 365

Query: 705 GSTVILKAARD-NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           G  VI  + R  +G+ I   F++ + G  I  D   S+F+RF        R+  G GLGL
Sbjct: 366 GGIVISVSNRQSDGNIIQLAFAITDTGIGIEPDKLGSIFDRFNQAEDSITRKYGGTGLGL 425

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SIV+  + L GG +S+ S     TT    IP
Sbjct: 426 SIVKDLVILQGGDISVESEPGKGTTFRFFIP 456


>gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1027

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA   A++ K+ F+ ++S+ELR+PL  I+GFT L++     SL +   QY++ ++
Sbjct: 551 LKQAKEAADAANKAKSEFLANMSHELRTPLNAILGFTQLMQRDV--SLKADHQQYIKIVN 608

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+ND+L+L+ ++AG   LN +   L  LL  ++  +  K    N+ ++   D
Sbjct: 609 KSGEHLLGLINDVLELSKIEAGRTTLNETEFDLYQLLCSLETLLKLKAQAKNLSLRFEID 668

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSI 730
            ++  F+  D  +L Q+   +L NA+ F++KG+    VI +        IF+V++ G  I
Sbjct: 669 SQVPPFIKNDENKLRQVLINLLGNAIKFTNKGNVTLRVINQELEQLNTLIFAVEDTGPGI 728

Query: 731 PEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P +  + +F  F  +   R  + G GLGL I ++F+ + GG ++I S
Sbjct: 729 PPEEVQDLFKAFKQTKTGRESQEGTGLGLRISQNFVQMMGGKITIES 775


>gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
 gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
          Length = 1410

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++T+ ++ E+ L +  E    A + K+ F+ ++S+E+R+P+  IIGFT+LL        
Sbjct: 898  IDLTERIQFEKELQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNEQ---VT 954

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              +  +Y+  I A+   LL L+NDILDL+ ++AG M L+   +  + L +E+ Q     +
Sbjct: 955  EPRLKRYIRTIQAAGKTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIGQIFMINI 1014

Query: 663  HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------ 715
                +   V  D  L    + D  RL QI   +L NA+ F+ +G   +  +A D      
Sbjct: 1015 QRKGLDFLVDIDKTLPEGLLLDGVRLRQILFNLLGNAVKFTEQGYVKLKVSACDVDEHHS 1074

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              D +  V + G  IPED    +FN F    ++  ++  G GLGL+I +  +N+ GG + 
Sbjct: 1075 KLDILIQVSDTGIGIPEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVNMMGGDIW 1134

Query: 774  ISSSDEGVTTINCRI 788
            + S+    TT N  I
Sbjct: 1135 VESTPGQGTTFNLLI 1149


>gi|209523205|ref|ZP_03271761.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496356|gb|EDZ96655.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1366

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 17/244 (6%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L +  EA   A+  K+ F+ ++S+ELR+PL  I+GFT LL  +    L S+Q  Y++ I 
Sbjct: 886  LQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQN--SGLTSQQQDYLQIIQ 943

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S   LL+L+N++LDL+ ++AG + LN +   L  LL  +   +  K    N+ + +  D
Sbjct: 944  QSGKYLLSLINEVLDLSKIEAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVLDIQLD 1003

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNN 726
              +  +V  D  +L Q+   +L NA+ F+  G   +       G F+       F V++ 
Sbjct: 1004 QDIPDYVKTDESKLRQVLVNLLDNAIKFTDAGYVTL------RGSFVSSVSQLYFEVEDT 1057

Query: 727  GSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  I  D  + +F  FV ++  R  ++G GLGL+I + ++NL GG ++I S  +G     
Sbjct: 1058 GPGITPDEQERLFQPFVQTDVGRRHQQGTGLGLAISQQYVNLMGGKITIVSVVDGGAKFM 1117

Query: 786  CRIP 789
              +P
Sbjct: 1118 FNLP 1121


>gi|256838871|ref|ZP_05544381.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739790|gb|EEU53114.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 882

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++  ++ 
Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+ +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS   K  
Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++V    K+ + +   DR R+ Q+ +  ++NA+ F+++GS +     RD+ +  F
Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRRRDD-ELYF 675

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S     
Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 734 STFWFTLP 741


>gi|150010061|ref|YP_001304804.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938485|gb|ABR45182.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 882

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++  ++ 
Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+ +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS   K  
Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++V    K+ + +   DR R+ Q+ +  ++NA+ F+++GS +     RD+ +  F
Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRRRDD-ELYF 675

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S     
Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 734 STFWFTLP 741


>gi|256840060|ref|ZP_05545569.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738990|gb|EEU52315.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 632

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 132/222 (59%), Gaps = 13/222 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++
Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +LL L++DILDLA +++G M   ++ + + +++NE+  S   KM  +N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSVKEVINEIVTSFRIKM-PDNVALIAPKDSPE 505

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
               +DR RL Q+ S  L+NA+ ++S+G   +  A    GD I FSV + G  + +++  
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCITL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776
            +F+RF    ++G   ++G GLGLSI E+ +N  GG + ++S
Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601


>gi|301308093|ref|ZP_07214047.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833563|gb|EFK64179.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 882

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++  ++ 
Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+ +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS   K  
Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++V    K+ + +   DR R+ Q+ +  ++NA+ F+++GS +     RD+ +  F
Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDD-ELYF 675

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S     
Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 734 STFWFTLP 741


>gi|298374421|ref|ZP_06984379.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268789|gb|EFI10444.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 882

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++  ++ 
Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+ +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS   K  
Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++V    K+ + +   DR R+ Q+ +  ++NA+ F+++GS +     RD+ +  F
Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDD-ELYF 675

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S     
Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 734 STFWFTLP 741


>gi|255012665|ref|ZP_05284791.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 882

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++  ++ 
Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+ +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS   K  
Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++V    K+ + +   DR R+ Q+ +  ++NA+ F+++GS +     RD+ +  F
Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDD-ELYF 675

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S     
Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 734 STFWFTLP 741


>gi|251796742|ref|YP_003011473.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
 gi|247544368|gb|ACT01387.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
          Length = 595

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 7/220 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L   +E+K+ F+  +S+ELR+P+T + G  D+L+   LG LN  Q   +E    S   LL
Sbjct: 368 LEYLNELKSDFIATLSHELRTPITAVKGTVDILRKEVLGKLNDSQLDLLETAGKSIERLL 427

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N VN++LD A ++ G  +L YS     +L+ E    + + +++  + + V I  G+  + 
Sbjct: 428 NQVNELLDFAKMENGKFELMYSEFDFEELIREATHIVDSLINKKKLELAVEIHAGENRTM 487

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            ADR+R+LQI   +LSN++ F+ +   + +KA  ++ +    V + G  IP +  K++F 
Sbjct: 488 RADRERILQILLNLLSNSIKFTPQRGKITIKAYMEDNEMTIEVIDTGIGIPVEKQKNIFT 547

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +F  V+N    Q  G GLGL+I    I +HGG +S  S++
Sbjct: 548 KFYQVNN----QINGTGLGLAISRQLIEMHGGKISFESTE 583


>gi|29349960|ref|NP_813463.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341871|gb|AAO79657.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 635

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 163/329 (49%), Gaps = 20/329 (6%)

Query: 474 LSPGT----HIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL-LSDSVL 526
           ++PGT     +  +     R     +  DLF   I     D + K ++  LE+  S    
Sbjct: 180 MAPGTILLHPVEVLKGADGRSIYSPEVSDLFLCNIRECLKDGKLKEIEYPLEVDGSKHYF 239

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +  I P      +    ++ D +R    L E       AD +K+ F+ ++S+E+R+PL  
Sbjct: 240 QARIAPFEGNTVLALIHDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNA 299

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++++    L     ++ +Y+E I  +S +LL L+NDILDL+ +++G  ++++  + 
Sbjct: 300 IVGFSEIMA---LTENEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVE 356

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSK 704
           +  L++EV++    KM + N+ +KV+     G F    DR R++Q+    LSNA+  +  
Sbjct: 357 IAGLVDEVEKVHQLKM-KLNVDLKVVRPQ--GEFWTSTDRNRVMQVLFNFLSNAIKNTET 413

Query: 705 GSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           GS  +    +  GD++   V + G  IPE+    +F RF       Q  G GLGLSI +S
Sbjct: 414 GSITL--GLKQEGDWLKLFVSDTGCGIPEEKLPQIFTRFEKLNDFVQ--GTGLGLSICKS 469

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +   GG + +SS     +T    +P +E
Sbjct: 470 IVERLGGRIEVSSELGQGSTFALYLPYQE 498


>gi|154253913|ref|YP_001414737.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157863|gb|ABS65080.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 704

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 132/251 (52%), Gaps = 4/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           N     RA+  LT    A  +A   K+ F+  +S+ELR+PL  IIGF++ +K    G L 
Sbjct: 441 NAVLEARADE-LTRALMAAEQASLAKSEFLATMSHELRTPLNAIIGFSETMKLEVFGPLG 499

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + K ++Y + I+ S T LL+LV+DILD++ V++G   LN   + +  +   V  + A + 
Sbjct: 500 HGKYAEYAKDINNSGTHLLDLVSDILDISRVESGTDALNEEEVCIESVARAVLAATAAQA 559

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +  +  ++ +D  L    AD +++ QI + ++ NA+ F+  G TV +  ARD   +  +
Sbjct: 560 GKAEVVCRLDADAGLPPVFADERKIRQILTNLVGNAIKFNVPGGTVAVTLARDESGYRIA 619

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +       RF  + +  R +  G+GLGL IV+     HGGH +I S+   
Sbjct: 620 VADTGIGIVAEDIPKALARFGQLEDQFRRKYEGLGLGLPIVQVLTEQHGGHFAIESTPGR 679

Query: 781 VTTINCRIPSK 791
            TT+   +P +
Sbjct: 680 GTTVTITLPRE 690


>gi|108761548|ref|YP_634819.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|18030059|gb|AAL56598.1|AF449411_19 histidine kinase-like protein [Myxococcus xanthus DK 1622]
 gi|108465428|gb|ABF90613.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 502

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 10/232 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N  L++ D +K++F+  VS+ELR+PL +IIG++++L     G+LN +Q  YV  I 
Sbjct: 232 LAQANIRLKELDRLKSTFLGTVSHELRTPLASIIGYSEMLAEGLAGALNPEQLLYVRTIV 291

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
                LLNL++ ILDL+ ++AG ++L    + L  ++     S+A +     + ++V + 
Sbjct: 292 EKGESLLNLISSILDLSQIEAGRLRLVMGPVDLGSVIQTAVSSVAPQAQRKGVELEVRLP 351

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGD-----FIFSVKNN 726
                   AD  +L Q+   +L+NA+ F+S G   +V++  A    +     +   V++ 
Sbjct: 352 PLPQPRLAADADKLRQVVVNLLANAVKFTSSGGRVSVVMSEATAQHELAAPGYRVCVEDT 411

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  I ED  +++F  F  V  +   +  G GLGL+IV+S +  HGG VS+ S
Sbjct: 412 GMGIREDQFENIFQSFYQVDGSSTREHGGAGLGLAIVKSLVEGHGGRVSVES 463


>gi|262382637|ref|ZP_06075774.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295515|gb|EEY83446.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 882

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 142/248 (57%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++  ++ 
Sbjct: 503 DVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE--NME 560

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+ +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS   K  
Sbjct: 561 DKE-EYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQ 619

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++V    K+ + +   DR R+ Q+ +  ++NA+ F+++GS +     RD+ +  F
Sbjct: 620 DG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDD-ELYF 675

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S     
Sbjct: 676 YVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQGKG 733

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 734 STFWFTLP 741


>gi|260459403|ref|ZP_05807658.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259034957|gb|EEW36213.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 506

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 139/257 (54%), Gaps = 12/257 (4%)

Query: 539 MLTFVNVTDSVRAE--RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL 593
           ML+F +  D++ AE   A +  +EA R+A++    K+ F+  +S+ELR+PL  I+GF+++
Sbjct: 226 MLSFRSEKDALIAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEV 285

Query: 594 LKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +    LG + N     Y   +  S   LL+L+N+ILDL+ ++AG  +LN   ++L +++ 
Sbjct: 286 MANEVLGPMSNPTYRDYAHDVHDSGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLNIVE 345

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +    +  K    +IR+    +  L    AD + L QI   +LSNA+ F++ G  + ++ 
Sbjct: 346 DCCHMMELKARNKDIRVIQDFEQTLPRLFADERALRQITLNLLSNAIKFTATGGEIRVRV 405

Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
                 G +I S+K+NG  IPED    V + F   S A +   +G GLGL IV+  + +H
Sbjct: 406 GWTAGGGQYI-SIKDNGPGIPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMH 464

Query: 769 GGHVSISSS-DEGVTTI 784
           GG   + S   EG   I
Sbjct: 465 GGEFELHSKLREGTEAI 481


>gi|323528028|ref|YP_004230180.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385030|gb|ADX57120.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 1197

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 7/236 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D +RA+  L    E L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +
Sbjct: 466 ADLLRAQDDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEE 525

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKM 662
           Q +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ L+  L    E+ + +A   
Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVSVELETVSLDATLQSLEELFRPMAGAK 585

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           H N +  ++   G   S V+D QR+ QI   +LSNA+ F+ +G   +  A  D+      
Sbjct: 586 HLNLVFDRL--PGAPDSIVSDGQRVTQILRNLLSNAVKFTERGEVALSVAPADDDMLRID 643

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V+++G  I  D  + +F  F     +   Q  G GLGLSI   F  L GG ++++S
Sbjct: 644 VRDSGIGIASDKLEMIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVAS 699


>gi|282897495|ref|ZP_06305496.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197590|gb|EFA72485.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 643

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 148/308 (48%), Gaps = 33/308 (10%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-A 551
           E+  W L  A     D  R+  +    LLS S+ E   I +  +Q M       DS+R A
Sbjct: 328 ENKLWGLLIA--HQCDAPRQWTESEKALLS-SIAEQLAIAINQSQLM-------DSLREA 377

Query: 552 ERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            R LT++ + L +                  A  I+N F+  +S+EL +PLT +IG +  
Sbjct: 378 TRKLTQEKQTLEQRVIERTMALREALLAAEAASRIRNEFLATISHELLTPLTYVIGMSST 437

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L    LG L  +Q +Y++ I  S   LL ++NDILDL+ + AG   LN     L  L   
Sbjct: 438 LLRWPLGELTPRQREYLQTIHDSGERLLEMINDILDLSQIQAGKTVLNICEFSLTRLAEN 497

Query: 654 VKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  S+  K     + +K  V  + +   F AD  R+ QI   +L+NA+ F+ +G +V L+
Sbjct: 498 IVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQIIWNLLTNAIKFTPQGGSVTLR 557

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
              ++   IF V++ G  IPE+    VF +F  V  ++     G G+GL++ +  + LH 
Sbjct: 558 FWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHRPYEGTGIGLALTKQLVELHR 617

Query: 770 GHVSISSS 777
           G + + S+
Sbjct: 618 GRIEVEST 625


>gi|158422717|ref|YP_001524009.1| sensor protein [Azorhizobium caulinodans ORS 571]
 gi|158329606|dbj|BAF87091.1| sensor protein [Azorhizobium caulinodans ORS 571]
          Length = 553

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 133/242 (54%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611
           RA TE      +A+  K+ F+  +S+ELR+PL  I+GF++LL T     +++++ + Y  
Sbjct: 289 RARTEAE----RANLAKSRFLAAMSHELRTPLNTILGFSELLATDTEQRIDARRKEDYAR 344

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL +VNDILDL+ V+AG  +L++  I +  L++   + +       NI++  
Sbjct: 345 IIHESGQHLLGVVNDILDLSRVEAGAYELSFEHIDMAHLVDGCVEMVGLDAARRNIKVTT 404

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +   +L   +AD++ + Q+   +LSNA+ FS  G  V +  +  NG    SV+++G+ + 
Sbjct: 405 LLPARLPRPMADQRAVRQMTLNLLSNAVKFSEHGGLVEVNVSAQNGVVSLSVRDSGAGMS 464

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + +   F    +A R + RG GLGL++V + + LH G   ++SS  G TT+   +P
Sbjct: 465 PAEVERLGEPFFQAGDAER-RARGSGLGLAVVRALVKLHDGAFEVTSSVGGGTTVTISLP 523

Query: 790 SK 791
            +
Sbjct: 524 VR 525


>gi|16331424|ref|NP_442152.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1001594|dbj|BAA10222.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1178

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 137/559 (24%), Positives = 251/559 (44%), Gaps = 75/559 (13%)

Query: 280  VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-- 337
            VR++   GE  I++D+S  +   +  +    I+H++T+   I  Q +   +  R  +E  
Sbjct: 628  VRLVKKSGEL-ISVDISASVITYENHSIVQCIVHDITLQKTIQAQLQRENYFRRQLLEKM 686

Query: 338  ------LWEID----LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
                   +E++    L F   NP    +  + +      E++N   W E ++S  +  E 
Sbjct: 687  VEGLFVCYEVEQFPFLQFTVWNPMMKNITGYSQ------EEINQCGWYETLYSHGQPQEA 740

Query: 388  H--------------KDTWHL--PNG--QTLHV---IVTSNPRGGTIWMFENLTVQVDLE 426
                           K+ W +   +G  +T+ +   ++TSN +   + + +++T Q    
Sbjct: 741  VRVRMKAVALGVDMVKEEWQIIRRDGALRTVEISTALITSNNQTNILAVIQDITDQ---- 796

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-----PAFRSL--WKTEENRLSP--- 476
             +   +++    T+  + E + +F     I  SN     P+F SL  +  +E    P   
Sbjct: 797  KRQLQIIQNNEATLRCIVENLPIFFGMRTINFSNWYYINPSFESLTGYTPDEMYEDPLLW 856

Query: 477  -GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               H    A    +       W +F+       D  +    T+E L D + +        
Sbjct: 857  QKIHREEYAENLEQARPNLGEWTIFS---MEKKDGTQIWAQTVEFLVDDLSD-------T 906

Query: 536  AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            A+ ++   ++TD  RAE    R+L ++    R+ +E K+ FV  VS+E R+PLT+IIGF 
Sbjct: 907  ARVVVFGQDITDIKRAEIETLRSLVKE----RELNEAKSQFVDIVSHEFRTPLTSIIGFG 962

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +LL          K+ QY+  I  SS  L  L++D+L ++  DA  +++    I L +L 
Sbjct: 963  ELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLIDDVLSISRYDANKIEIELGNINLRNLA 1022

Query: 652  NEVKQSIATKM-HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            N++ ++ +  +  E+N  +         S V D + L  I   ILSNA+ +S+ GST+ L
Sbjct: 1023 NDLIENFSCGLGSEHNFELNYHLKPDEHSLV-DVRLLRHILENILSNAIKYSAPGSTITL 1081

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
              ++D    +F V++ G  IP    + +F  F   ++ G   G GLGLSIV+ ++   GG
Sbjct: 1082 DISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNVGDIPGTGLGLSIVKRYVEFQGG 1141

Query: 771  HVSISSSDEGVTTINCRIP 789
             + + S     TT+  ++P
Sbjct: 1142 TIEVISMPGKGTTMVIKLP 1160


>gi|255009587|ref|ZP_05281713.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1023

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + V D    ER + E  +A     ++D++K++F+ ++S+E+R+PL  I+GF+DLL  S+ 
Sbjct: 622 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 681

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               + + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y    L +  N +  S+ 
Sbjct: 682 ---QADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMK 738

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +M    +R+  I+   +     DR R+ Q+ +  ++NA+ ++ KGS  +     D G  
Sbjct: 739 QRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMTNYVTNAIKYTPKGSIEMGYEVMDTGIR 798

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ VK+ G  IPE+    VF+RF       Q  G GLGLSI ++     GG V   S
Sbjct: 799 LY-VKDTGIGIPEEKKNKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 852


>gi|218437602|ref|YP_002375931.1| histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170330|gb|ACK69063.1| histidine kinase [Cyanothece sp. PCC 7424]
          Length = 843

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 5/252 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VT   +  + L  KN  L + + +K+ F   +S+EL+SPLT++IG + LLK  KLG L
Sbjct: 314 LDVTQQQQFCQELALKNADLIQLNRLKDEFFTCISHELKSPLTSVIGLSSLLKEQKLGEL 373

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q  Y E I  S   L+ LVND+LDL  ++   +KL    + +  +  +   S+  K 
Sbjct: 374 NERQVHYTELIYHSGRQLMTLVNDLLDLTRLETRQLKLKLLPVEIKSVCQKAYHSLEEKY 433

Query: 663 H---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
               E  I   +  D  L   VAD  RL Q+   +L NA+  S     + LK  R     
Sbjct: 434 KGKIEPPIPFTLEIDPGLKEIVADELRLQQMLFHLLDNAVQLSESDGEIGLKVNRWENWI 493

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F+V + G  IP++    +F ++ S  N  R Q  G GLGL + +     HGG +S  S 
Sbjct: 494 AFTVWDTGIGIPQESQTLLFQQWQSQENLLREQLEGTGLGLILTQRLAKAHGGDISFISR 553

Query: 778 DEGVTTINCRIP 789
            E  +     +P
Sbjct: 554 KERGSQFTLLLP 565


>gi|153868800|ref|ZP_01998541.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152074617|gb|EDN71454.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 1054

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 154/296 (52%), Gaps = 24/296 (8%)

Query: 501  AAIITSFDDERKS-LQGTLELLSDSVLEYSIIPLPNAQTMLTF----------VNVTDSV 549
            A + T FD+  +S  QGT+E +     + +  P+ N    L F           ++T+  
Sbjct: 710  AQLATKFDEIIQSECQGTIETVHQRK-DGTEFPVENFLQSLKFDEGYLLISSARDITEHK 768

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +AE AL +  E    A+  K+ F+ ++S+E+R+P+  +IGF+D+L  SK+   + KQ  Y
Sbjct: 769  QAEIALIQAKEQADSANRAKSEFLANMSHEIRTPMNAVIGFSDIL-ASKV--TDKKQKTY 825

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++ I  +   LL L+NDILDL+ ++AG + + Y  + L  +  E++Q  + KM E N+  
Sbjct: 826  LDSIQTAGKSLLTLINDILDLSKIEAGRLDIQYEPVNLQLIFTELQQIFSLKMAEKNLEF 885

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG----DFIFS 722
             + +D  L   +  D  RL Q+   ++ NA+ F+  G   +   K + +N     D I +
Sbjct: 886  ILETDETLPPVLFLDETRLRQMLLNLMGNAIKFTDSGYIKLCANKGSTENDHSQVDLILA 945

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            V+++G  IP +    +F  F     +  R+  G GLGL+I +  + +  GH+++ S
Sbjct: 946  VEDSGIGIPAEQQALIFESFRQQDGQSTRQYGGTGLGLAITKRLVEMMNGHITVES 1001


>gi|85714073|ref|ZP_01045062.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85699199|gb|EAQ37067.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 752

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD   A+RAL E  +    A++ K+ F+   S+E R+PL  IIG + LL  +   +L 
Sbjct: 208 DVTDRTEAKRALGEARDHANAANQAKSRFLAMTSHEFRTPLNGIIGMSGLLLET---ALT 264

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ YV+ + AS   LL+L+ ++LD + ++AG + L +   +L+DL+ ++ + +A +  
Sbjct: 265 PEQTTYVKAVKASGDALLSLIEELLDYSRIEAGKIDLEHRPFILSDLIEDITELLAPRAQ 324

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721
              + I    D  L +  + D  RL Q+   +  NA+ F+S G   +I+       D  F
Sbjct: 325 ARQLAIASYIDETLPTEVIGDAARLRQVLLNLAGNAIKFTSTGGVALIVTPGVGRNDIRF 384

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  I  D    +F  F     +  R   G GLGLSI +  +   GGH+++ S   
Sbjct: 385 MVRDTGIGIAPDAQARIFRDFEQADGQIARNYGGSGLGLSISDRIVKRMGGHITLQSEPG 444

Query: 780 GVTTINCRIP 789
             +T    +P
Sbjct: 445 SGSTFEVSVP 454


>gi|313147366|ref|ZP_07809559.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136133|gb|EFR53493.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 955

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + V D    ER + E  +A     ++D++K++F+ ++S+E+R+PL  I+GF+DLL  S+ 
Sbjct: 554 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 613

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               + + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y    L +  N +  S+ 
Sbjct: 614 ---QADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMK 670

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +M    +R+  I+   +     DR R+ Q+ +  ++NA+ ++ KGS  +     D G  
Sbjct: 671 QRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMTNYVTNAIKYTPKGSIEMGYEVMDTGIR 730

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ VK+ G  IPE+    VF+RF       Q  G GLGLSI ++     GG V   S
Sbjct: 731 LY-VKDTGIGIPEEKKNKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 784


>gi|316934984|ref|YP_004109966.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315602698|gb|ADU45233.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 607

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 140/271 (51%), Gaps = 9/271 (3%)

Query: 526 LEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           LE      P  +T +  V  ++T+    E+AL E      +AD+ K+ F+  +S+ELR+P
Sbjct: 308 LEPGAATAPTGETEVVAVMRDITERKLHEQALDEARAEADRADDAKSRFLATMSHELRTP 367

Query: 584 LTNIIGFTDLLKTS---KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           L  IIGF+D++      +LG+   ++ +Y + I+ S   LL++VN ILD++ +++G  ++
Sbjct: 368 LNAIIGFSDMIVQEDELRLGA--ERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEI 425

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                     L      +A K  ++ I +   +   L   V D +   QI   ++SNA+ 
Sbjct: 426 VPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPENLPDVVGDPRAFKQILLNLVSNAVK 485

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F+ +G TV + AA ++   +  V + G  I E+  K + + F       QRR  G GLGL
Sbjct: 486 FTERGGTVTVSAAVESTRLVLCVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGL 545

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SIV+S + +HGG + + S  +  TT+   +P
Sbjct: 546 SIVKSLVRMHGGEIDVRSQIDCGTTVTVSLP 576


>gi|254444627|ref|ZP_05058103.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258935|gb|EDY83243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 561

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 6/244 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L    E   + +  K+ F+ ++S+ELRSPL  +IGF+DL++         +  +Y
Sbjct: 176 RYREELISAKEMAERTNAYKSEFLANMSHELRSPLNCVIGFSDLIEQDVEEKCFERIGEY 235

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I A+   LL ++ +ILDLA +D G M+L    + L++LL  +   +     E  + I
Sbjct: 236 AGLIKAAGKHLLGMITEILDLARIDTGKMRLEKREVHLDELLELIASMLKLPAREKRLSI 295

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
           ++  D     F AD +RL Q+   +LSNA+ FSS+GS + + +A+  G+ +   V + G 
Sbjct: 296 ELDCDPI--RFEADERRLHQVLHNLLSNAIKFSSEGSRIGV-SAQGQGEIVEIVVWDEGR 352

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D    +F  F  V +       G GLGL+IV+  ++LHGG VS+ S     +  + 
Sbjct: 353 GIAPDWLDRIFEPFEQVESGDSELGEGAGLGLAIVKRIVDLHGGQVSVESELGVGSRFSV 412

Query: 787 RIPS 790
           R+P+
Sbjct: 413 RLPA 416


>gi|260173568|ref|ZP_05759980.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921835|ref|ZP_07918075.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695710|gb|EFS32545.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 1007

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + V D    E+ + E  EA  +A   D++K++F+ ++S+E+R+PL  I+GF++L+  +  
Sbjct: 615 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG- 673

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +++ Y++ I++++ +LL L+NDILDL+ ++AG ++L Y    L++    +  S+ 
Sbjct: 674 ---EEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++   +I +  I+         DR R+ QI +  ++NA+ ++SKGS  +  A +D G +
Sbjct: 731 QRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGGVY 790

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F VK+ G  I +D    VF RF       Q  G GLGLSI ++     GG V   S
Sbjct: 791 -FYVKDTGIGIADDKKGKVFQRFEKLDEFAQ--GTGLGLSICKAIAEAMGGKVGFES 844


>gi|237715649|ref|ZP_04546130.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408658|ref|ZP_06085204.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294646689|ref|ZP_06724314.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807119|ref|ZP_06765937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444358|gb|EEO50149.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353523|gb|EEZ02617.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637977|gb|EFF56370.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294445685|gb|EFG14334.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 631

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 131/238 (55%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L  ++      +  +Y + I 
Sbjct: 398 LSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTEDPV---EMREYADIIE 454

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++ +LL L+NDILDL+ ++AG      S+I +N  + E++QS+  ++  +++ +     
Sbjct: 455 TNTDLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTER 514

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                F  D+ RL+Q+ +  ++NA+ F+  G+  +     D     F V + G  +  + 
Sbjct: 515 LPGCLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCGMSNEQ 574

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           C+ VF RFV   +    +G GLGLSI  + +   GG + + S +   +T    +P ++
Sbjct: 575 CEHVFERFVK--YNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLPYRK 630


>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1625

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 144/653 (22%), Positives = 278/653 (42%), Gaps = 71/653 (10%)

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            + L + G ++++    L  + L      ++ + +S++  V+  D  GD+ +         
Sbjct: 511  KALRMIGTHTDITRRKLAEESLREQEFFYRSILESINDAVFLTDAQGDLTFV-------C 563

Query: 227  ETEGIVFQKAIGESRKLFKEE--IKKRMISSSALEKNF-------CETVSTLEHGNNKSY 277
                ++F ++  E  ++   E  +  R+I S  L ++        C    +  H      
Sbjct: 564  PNAHVIFGRSRQELLEMANIEHVLGSRLIKSGELVEDEQEISNRECAIKDSRGHWRYLLV 623

Query: 278  KIVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQ 329
             I R+     E G+ +    DV+++    D    T E    I+ N    I I D+   L 
Sbjct: 624  NIKRLPEQLHEKGLYLYCCRDVTEKKKTEDTFRQTLERYRLIVENANEGIRILDRQARLS 683

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            F NRS   +    L +     ++  + +F+   ++      W+  K      Y+    H+
Sbjct: 684  FANRSMALM----LGYSPEKVTDHSIWDFIHPEDQDKFNRIWENRKSGKAEKYELRLIHR 739

Query: 390  DTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                  NG T+  +V+S P        G+  +  ++T +  LE +    ++ Q E +  +
Sbjct: 740  ------NGSTVWTLVSSTPLFKDKEFNGSFALVADITEKKHLEEE----LRKQQEILTSM 789

Query: 444  SEGVAVFG----PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE-----S 494
             E   V G     D R          +   E N  +P      I+ +   YY E     S
Sbjct: 790  EEMARVGGWEWDIDARTMTWTRGAYLIHDFEVNH-NPTLSSELISKSLECYYKEDRSRVS 848

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT----FVNVTDSVR 550
            + +   A    ++D E   +      L    +  +  P+ ++  ++      +++T+  +
Sbjct: 849  NAFQACAEKGVAYDQEFPFVSARGRRL---WVRTAAWPVYDSGRIVRVAGHIMDITELKQ 905

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ++  L E  +  ++A   K+ F+ ++S+E+R+P+  +IG TDLL  ++   L  +Q    
Sbjct: 906  SQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLMDTE---LRPEQRSLA 962

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I +S   LL L+NDILD + ++AG ++L      L  LL ++   +A +  E  + + 
Sbjct: 963  ESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRYLLEDLASLMAVRADEKGLELI 1022

Query: 671  VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKN 725
             + D  + + V  D  RL QI + ++ NA+ F+ +G  V+     + + D+   +F+V++
Sbjct: 1023 CLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQGEVVVRVQRSEVSADDVLLLFTVQD 1082

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             G  IPED    +FN+F        R+  G GLGL+I      + GG V + S
Sbjct: 1083 TGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQS 1135


>gi|307151600|ref|YP_003886984.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981828|gb|ADN13709.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 855

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 5/243 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++  +++T   R  + L  KN  L + + +K+ F   +S+EL+SPLT++IG + LLK  K
Sbjct: 318 LVMALDITQHQRVCQDLALKNSELIQLNRLKDEFFTCISHELKSPLTSVIGLSSLLKEQK 377

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           LGSLN +Q +Y E I  S   L+ LVND+LDL  ++ G +KL    + +  +  +  Q+ 
Sbjct: 378 LGSLNERQVRYSELIYHSGRQLMMLVNDLLDLTRLETGQLKLKPIPLDVKTICQQAYQTF 437

Query: 659 ATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +     +  I   +  D  +   VAD  R+ Q+   +L NA+  S+    + LK  R 
Sbjct: 438 EERNKGKIDFPIPFTLEIDPGIEQIVADELRMQQMLFHLLDNAIKLSNSDGEIGLKVNRW 497

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F+V + G  IPED    +F ++ S  N    Q  G GLGL + +     HGG +S
Sbjct: 498 ENWLAFTVWDTGLGIPEDSQNLLFQQWQSQENPLSEQLEGTGLGLVLTQRLAKAHGGEIS 557

Query: 774 ISS 776
             S
Sbjct: 558 FIS 560


>gi|160886321|ref|ZP_02067324.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
 gi|156108206|gb|EDO09951.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
          Length = 1007

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + V D    E+ + E  EA  +A   D++K++F+ ++S+E+R+PL  I+GF++L+  +  
Sbjct: 615 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG- 673

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +++ Y++ I++++ +LL L+NDILDL+ ++AG ++L Y    L++    +  S+ 
Sbjct: 674 ---EEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++   +I +  I+         DR R+ QI +  ++NA+ ++SKGS  +  A +D G +
Sbjct: 731 QRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGGVY 790

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F VK+ G  I +D    VF RF       Q  G GLGLSI ++     GG V   S
Sbjct: 791 -FYVKDTGIGIADDKKGKVFQRFEKLDEFAQ--GTGLGLSICKAIAEAMGGKVGFES 844


>gi|317476674|ref|ZP_07935918.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907137|gb|EFV28847.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 867

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 142/256 (55%), Gaps = 9/256 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            Q++  + N  D + A R     ++AL +AD++K++F+ ++S+E+R+PL  I+GF+DLLK
Sbjct: 619 CQSIQRYKNTEDELIAAR-----DKAL-QADKLKSAFLANMSHEIRTPLNAIVGFSDLLK 672

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             + G  + +  Q+VE I+ + T+LL L+NDILDL+ +++G M   +S+  L  ++ +V 
Sbjct: 673 DLE-GFSSEEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVY 731

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S    M +         +G   S + D  RL Q+ + +++NA  F++KG  ++     D
Sbjct: 732 DSQRLSMPQGVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFTTKGYILLGYRVED 791

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +G  +  V++ GS I ++    +F RF    +  Q  G GLGLSI ++ +    G ++++
Sbjct: 792 SGHTVIFVEDTGSGISDENLGHIFERFYKADNFTQ--GAGLGLSICQTIVERLNGTITVT 849

Query: 776 SSDEGVTTINCRIPSK 791
           S     T    RI  K
Sbjct: 850 SKLGKGTRFEVRISDK 865


>gi|293605362|ref|ZP_06687745.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292816234|gb|EFF75332.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 1116

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 133/245 (54%), Gaps = 5/245 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +R + ALTEK   L +A + K+ F+ ++S+ELR+PL + +    LL  +K G+L+++Q +
Sbjct: 422 LRVQDALTEKARQLTQASQFKSEFLANMSHELRTPLNSTLILAKLLSDNKPGNLSTEQVK 481

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I A+ + LL L+NDILDLA ++AG   +    + +   L  + + +     E  + 
Sbjct: 482 YAQTIYAAGSDLLALINDILDLAKIEAGQATVEVEQVTIASTLQRLLEPMRPMAVEKGLV 541

Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
           +++  D  +  +   D +RL Q+   +LSNA+ F+ +GS V ++ +R   D + F+V + 
Sbjct: 542 LELDIDAAVPATMQTDAKRLGQVLKNLLSNALKFTERGS-VAMRVSRSGRDRVRFAVHDT 600

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +P +  + +F  F        R+  G GLGLSI      L GG ++++S+    +  
Sbjct: 601 GIGVPAEQQELIFEAFRQADGSTHRKYGGTGLGLSISRDLAELLGGKLTVTSTAGQGSVF 660

Query: 785 NCRIP 789
              +P
Sbjct: 661 TLEVP 665


>gi|163795303|ref|ZP_02189270.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159179289|gb|EDP63820.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 664

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 130/240 (54%), Gaps = 5/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYI 613
           LT + E    A   K+ F+ ++S+ELR+PL  ++GF+++LKT   G L +K+  +Y + I
Sbjct: 426 LTREKERAEAASRTKSQFLANMSHELRTPLNAVLGFSEILKTEAFGPLGAKRYKEYADDI 485

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            AS   LL+L+NDILD++ ++AG  +L+     L  ++  V + +  +  E ++ ++V +
Sbjct: 486 HASGHHLLSLINDILDMSKIEAGKYRLHKEKEALASIIGAVGRMMRGRAAEADLVLQVEL 545

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  L   V D + + Q+   +L+NA+ F+  G  V L     +      V +NG  IPE
Sbjct: 546 PDPALVVNV-DVRAIKQVLINLLANAITFTPAGGRVRLGVRVHDDGVAMYVADNGIGIPE 604

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +   F  +  A R  R G GLGL++  + + LH G +++ S     TT+  R+P+
Sbjct: 605 EELPRLLRPFEQIDGADRRGREGTGLGLALSNALVELHSGTLTLESQIGIGTTVTVRLPA 664


>gi|288958788|ref|YP_003449129.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911096|dbj|BAI72585.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 413

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/241 (34%), Positives = 124/241 (51%), Gaps = 6/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613
           L++  EA RKAD  K  F+  +S+ELR+PL +IIGF D+L    +G L      +YV+ I
Sbjct: 170 LSDALEAARKADRAKLDFLAVMSHELRTPLNSIIGFADVLAGEGMGKLGHPDYLEYVKLI 229

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL +VN+ILD      G +++  S + +  LL      +A K     + + V  
Sbjct: 230 EESGRSLLTMVNNILDYTRGSTGSIEIQDSDVNIPQLLTGCADMLAPKAAGKGLALAVRP 289

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
                    DR+RL ++   +L NA+ F+  G TV + A  D G F+  +V+++G  IP 
Sbjct: 290 CPAF-RMRVDRRRLREMVLNLLDNAVKFTQPGGTVTV-AVEDRGAFVGLTVRDDGPGIPG 347

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D+   +FN F    H   RR  GVGLGL IV  F  LHGG V + S+    T +   +P 
Sbjct: 348 DLMGRIFNPFTQAEHSLVRRHEGVGLGLPIVRRFAELHGGGVELDSAPGRGTMVTILLPK 407

Query: 791 K 791
           +
Sbjct: 408 E 408


>gi|262381697|ref|ZP_06074835.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296874|gb|EEY84804.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 632

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 132/222 (59%), Gaps = 13/222 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++
Sbjct: 390 KRERAEELDRLKSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNN 446

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +LL L++DILDLA +++G M   ++ + + +++NE+  S   KM  +N+ +    D   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMNVKEVINEIVTSFRIKM-PDNVALIAPQDSPE 505

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
               +DR RL Q+ S  L+NA+ ++S+G   +  A    GD I FSV + G  + +++  
Sbjct: 506 CQIYSDRMRLTQVISNFLNNAIKYTSEGCITL--AYEIIGDEIKFSVTDTGDGMSQEIQA 563

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776
            +F+RF    ++G   ++G GLGLSI E+ +N  GG + ++S
Sbjct: 564 HIFDRF----YKGNTFKQGTGLGLSICETIVNRLGGRIGVNS 601


>gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 1238

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 136/259 (52%), Gaps = 8/259 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +++++   AE+ L E+ E L  A+  K+ F+ ++S+ELR+PL +I+  +D L+ +  G
Sbjct: 574 VIIDISERKAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLAG 633

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L  KQ+++ + +  + + LL L+ND+LDLA V++G M+L    I + D+L E+  S+  
Sbjct: 634 NLTEKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASLRP 693

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
                 +R+    +  +   +  DR RL QI   +LSNA+ F+  G   +  +++   + 
Sbjct: 694 MAELKGLRLHTQLEAGVPRIIHTDRVRLHQILRNLLSNALKFTDHGDVTLSVSSQGRQED 753

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 FSV+++G  I     + +F  F        RR  G GLGL+I    +    G +
Sbjct: 754 ERELLCFSVRDSGIGIDPAQHEQIFQAFQQLDGSTSRRFGGTGLGLAITRQLVLALDGDI 813

Query: 773 SISSSDEGVTTINCRIPSK 791
           S+ S+    +T   R+P K
Sbjct: 814 SLQSAPGLGSTFTVRLPVK 832


>gi|239617406|ref|YP_002940728.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506237|gb|ACR79724.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 538

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 147/270 (54%), Gaps = 9/270 (3%)

Query: 530 IIPLPNAQTMLT------FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +I +  A T LT      F  +T++ +  + + + N  +++ + +K+ F+  +S+ELR+P
Sbjct: 255 LISIIIAATFLTVILLTYFAILTNARKMIKTMEQDNIKIKELERLKSEFLATMSHELRTP 314

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +IIGF  ++     G +N +Q + +  + +SS  LLNL+NDILD++ ++AG M  +  
Sbjct: 315 LNSIIGFVSMILQGISGDINEEQRKQLSMVHSSSIHLLNLINDILDISKIEAGKMSFSKD 374

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + D+++EV Q+++  + +  +++      ++    +D+ R+ QI   ++SNA+ F+ 
Sbjct: 375 RFNIKDVISEVVQNVSPLISKKEVKLITEIPDEIPEVYSDKTRVFQILLNLVSNAIKFTE 434

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           KG  + +K   D      SV + G  I E+  +++F  F  +S + R + +G GLGL + 
Sbjct: 435 KGE-IRIKCEVDGDKLKISVSDTGKGIKEEDMETLFEAFRQISGSARRRYQGAGLGLYLS 493

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  + L GG + + S     +T    +P K
Sbjct: 494 KKLVTLLGGEIWVESEYGKGSTFTFTLPLK 523


>gi|218887769|ref|YP_002437090.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758723|gb|ACL09622.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1358

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 23/267 (8%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++T+   AE  L    E    A + K++F+ ++S+ELR+P+  ++G   LL  + L   
Sbjct: 929  MDITERKNAELELINAREVAETATKAKSAFLANMSHELRTPMNGVLGMLQLLDATPL--- 985

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +Q  YV+   A+ + L  L+ D+LDLA V++G + +       N L  EV   +  + 
Sbjct: 986  DPEQRGYVQVAHAAGSNLTRLLGDLLDLARVESGRLTIREEPFDFNGLTQEVLAVLRPEA 1045

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
                I ++  +DG  G+ + D QR+ Q+   I+ NA+ F+ +G   +L     +      
Sbjct: 1046 DRKGIVLEAATDGMPGALLGDPQRIRQMLLNIVGNAVKFTDRGHVRLLARFEPSAGPSAT 1105

Query: 719  --------------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
                             +V++ G  IP DM  ++F  F  V +A   +  G GLGLSIV 
Sbjct: 1106 AEPGGQGEPGGQGTLYLAVEDTGIGIPSDMLGNIFEPFTQVEDAVSRRHGGAGLGLSIVR 1165

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
              ++L  G VS++S +   TT+  R+P
Sbjct: 1166 RIVDLMEGEVSMTSEEGRGTTVTLRLP 1192



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  F  ++S+ELR+PLT ++G  + L      S + +    +  +  ++ +L   V+
Sbjct: 192 DVLKTRFFANISHELRTPLTLLLGPLERLLAET--SEDDEHRHSLFTMLRNARLLHQHVD 249

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LDL+ VDAG M+  ++   L+ L         T   +  +   V +  +L + V D  
Sbjct: 250 DMLDLSRVDAGAMQPRHAEADLSALTRTTCAYFDTLAAQRGMHYGVQAPLRLDAQV-DTD 308

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           +  +I   +LSN+  F+  G +V +   R   + + SV ++G  +P  +  +VF R+  +
Sbjct: 309 KYRRILLNLLSNSFKFTPDGGSVSVTLERQGDEALLSVSDDGPGVPAHLRGAVFERYRQS 368

Query: 746 AH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               RG   G GLGL+IV+ F  LHGG  S+    EG      R+P
Sbjct: 369 GEGARGLHGGSGLGLAIVKEFAELHGGTTSVGQGAEGGALFQVRLP 414


>gi|218130180|ref|ZP_03458984.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
 gi|217987684|gb|EEC54012.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
          Length = 867

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 142/256 (55%), Gaps = 9/256 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            Q++  + N  D + A R     ++AL +AD++K++F+ ++S+E+R+PL  I+GF+DLLK
Sbjct: 619 CQSIQRYKNTEDELIAAR-----DKAL-QADKLKSAFLANMSHEIRTPLNAIVGFSDLLK 672

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             + G  + +  Q+VE I+ + T+LL L+NDILDL+ +++G M   +S+  L  ++ +V 
Sbjct: 673 DLE-GFSSEEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVY 731

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S    M +         +G   S + D  RL Q+ + +++NA  F++KG  ++     D
Sbjct: 732 DSQRLSMPQGVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFTTKGYILLGYRVED 791

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +G  +  V++ GS I ++    +F RF    +  Q  G GLGLSI ++ +    G ++++
Sbjct: 792 SGHTVIFVEDTGSGISDENLGHIFERFYKADNFTQ--GAGLGLSICQTIVERLNGTITVT 849

Query: 776 SSDEGVTTINCRIPSK 791
           S     T    RI  K
Sbjct: 850 SKLGKGTHFEVRISDK 865


>gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 935

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 40/285 (14%)

Query: 545 VTDSVRAERALTEKNEALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGF 590
           V + +R+E AL    + LR A                 K+ F+ ++S+E+R+P+  +IG+
Sbjct: 546 VDERIRSENALRRSEDELRAAKLEAERLAREAEAASLTKSEFLANMSHEIRTPMNAVIGY 605

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +DLL  +     + +Q  Y++ I A S  LL L+NDILDL+ ++AG M+L YS + +  L
Sbjct: 606 SDLLSNT---VKDPQQRNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLEYSAVSVRRL 662

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L++V+     +  E  I ++V  D K+  + + D  RL Q+   ++ NA+ F+ +G   +
Sbjct: 663 LSDVRHIFDLRATEQGISLEVSVDSKMPAAMMLDETRLRQVLFNLVGNAIKFTHEGGVTV 722

Query: 710 LKAA--RDNGD------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
              A  R + +                   + +V + G  IP D  + +F+ F     + 
Sbjct: 723 RATATPRKSSEKQPVEETASEVDRRCFYRLVVTVSDTGIGIPPDQQEQIFDAFEQQEGQN 782

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RR  G GLGL+I    + + GG + + S     +T   ++P  E
Sbjct: 783 TRRYGGTGLGLAISRKLVRMMGGELQVESEPGAGSTFTVKLPRVE 827


>gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 882

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 121/242 (50%), Gaps = 12/242 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R E  L +   A   A   K+ F+  +S+E+R+P+  ++G  DLL  +   +L 
Sbjct: 379 DVTERKRVEAELQQAKAAAESASRTKSDFLASMSHEIRTPMNAVMGIADLLAKT---ALT 435

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV+    S   LLNL+NDILDL+ V+A  + L  +   L+D L +  + +A K  
Sbjct: 436 PEQDKYVQIFRRSGDNLLNLINDILDLSKVEASQLDLEQTGFSLSDHLEKAIEMVAPKAQ 495

Query: 664 ENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720
           E   I I  I+       V D  RL Q+   +L NA+ F+  G  V LK  RD    +  
Sbjct: 496 EKGLILISEIAPDVSNDLVGDPTRLRQVLLNLLGNAIKFTQAGQ-VSLKVERDADGSVPT 554

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              FSV + G  I  D    VF RF        RR  G GLGL+I +  + L GG + ++
Sbjct: 555 ALRFSVADTGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKRLVELMGGRIGVT 614

Query: 776 SS 777
           S+
Sbjct: 615 ST 616


>gi|325921438|ref|ZP_08183294.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548080|gb|EGD19078.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 291

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL++I+  T LL+    G LN++QS+ V ++S
Sbjct: 44  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLSSILSITRLLEDGMDGPLNAEQSKQVRFVS 103

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS+  L  +V+D+LDLA ++AG + ++     L DL + ++          +  +     
Sbjct: 104 ASARELTEMVDDLLDLAKIEAGRIAISPGWFDLMDLFSALRGMFRPLTDAGSTTLIFEDP 163

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP ++
Sbjct: 164 PALPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIPAEL 223

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +++F  FV      Q+R  G GLGL+I + F  L GG V I+S
Sbjct: 224 HEALFEDFVQVDSPLQKRLTGTGLGLAICKRFAELLGGRVGINS 267


>gi|323139256|ref|ZP_08074310.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
 gi|322395477|gb|EFX98024.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
          Length = 923

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 137/261 (52%), Gaps = 10/261 (3%)

Query: 542 FVNVTDSVRAE-RALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           + ++ D +RA  R L   NE       A  +A + K++F+ ++S+ELR+PL  IIG++++
Sbjct: 395 YGSMEDKIRARTRELQMANEELSVARVAAEEASKTKSAFLANMSHELRTPLNAIIGYSEM 454

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+   L   +++  + ++ I  +   LL L+NDILDL+ ++AG M++    + +  L+NE
Sbjct: 455 LQEDALDKGDAEPLEDLKKIEGAGRHLLGLINDILDLSKIEAGKMEVFIEKVDIRPLVNE 514

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           V   +     +N   ++++     GSF +D  ++ Q    ++SNA  F+SKG   ++   
Sbjct: 515 VMSIVQPLAEKNGNALELVCPDDAGSFHSDETKVKQCLLNLMSNANKFTSKGKVTLIVER 574

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                 +F V + G  + E+    +F  F        +R  G GLGL+I + F N  GG 
Sbjct: 575 DAQASVVFRVSDTGLGMTEEQLGRLFLAFTQADASTTKRFGGTGLGLAITKHFCNALGGQ 634

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +S+ S+ +  +T    +P ++
Sbjct: 635 ISVQSAPDAGSTFTITLPDQQ 655


>gi|298374183|ref|ZP_06984141.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268551|gb|EFI10206.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 1045

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 133/236 (56%), Gaps = 5/236 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  + E  L    +   +++++K++F+ ++S+E+R+PL  I+GF+++L ++   +L
Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--NL 714

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             K+ ++ + I  ++++LL L+NDILDL+ ++AG ++  Y  + +N +L +++QS   K 
Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +++I      +      DR RL Q+   +L+NAM F+  G        RD+    F 
Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGLISFGYKLRDDNTLWFY 833

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           V++ G  IPE+  K +F RFV      Q  G GLGLSI E  +    G + + S +
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDSME 887


>gi|186681478|ref|YP_001864674.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186463930|gb|ACC79731.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 683

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A   A+ +++ F+  +S+EL +PLT +IG +  L    LG L+ +Q  Y++ I  S   L
Sbjct: 443 AAEAANRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQRQRDYLQTIHDSGEHL 502

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRIKVISDGKLG 678
           L ++NDILDL+ ++AG   LN S   L ++  +  +S+  K    + N+ + +  D    
Sbjct: 503 LEMINDILDLSQIEAGKTALNISEFSLVNVAEKALESLRNKATSEQINLNLDLQIDPSRD 562

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F AD +R+ QI S +L+NA+ F+ +   V L+   ++   IF V++ G  I E+    +
Sbjct: 563 RFTADAERVAQILSNLLTNAIKFTPESGNVTLRLWVEDDTAIFQVEDTGIGIREEQLPLL 622

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F +F  +   +R +  G GLGL++ +  + LH G + + S+
Sbjct: 623 FEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVEST 663


>gi|299146808|ref|ZP_07039876.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517299|gb|EFI41180.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 1007

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + V D    E+ + E  EA  +A   D++K++F+ ++S+E+R+PL  I+GF++L+  +  
Sbjct: 615 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG- 673

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +++ Y++ I++++ +LL L+NDILDL+ ++AG ++L Y    L++    +  S+ 
Sbjct: 674 ---EEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 730

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++   +I +  I+         DR R+ QI +  ++NA+ ++SKGS  +  A +D G +
Sbjct: 731 QRLKNPDIVLTEINPYHCCRVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGGVY 790

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F VK+ G  I +D    VF RF       Q  G GLGLSI ++     GG V   S
Sbjct: 791 -FYVKDTGIGIADDKKGKVFQRFEKLDEFAQ--GTGLGLSICKAIAEAMGGKVGFES 844


>gi|163792591|ref|ZP_02186568.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159182296|gb|EDP66805.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 385

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 2/251 (0%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +VTD V A+R L+    A   A + K++F+  +S+ELRSPL  IIGF +++    LG
Sbjct: 123 TVQDVTDRVSADRQLSGARRAAEAASDAKSTFLAVMSHELRSPLNAIIGFAEIIAGRLLG 182

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + +  +Y E I  S T LL L++DILDL+ + AG M L+   + +++L     +  A 
Sbjct: 183 PTDPRYFEYAEDIRVSGTHLLELISDILDLSKIGAGKMHLDEQHVDISNLTRRTARLFAA 242

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +    + +            AD  RL QI   +++NA+ F+  G T+ + A       +
Sbjct: 243 NLSTAQLELVNAVPTGFPILRADPVRLGQIIVNLVANAIKFTPPGGTITVNAEDTTDAVL 302

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  +           FV +       R G GLGLSI     +LHGG ++I S  
Sbjct: 303 IKVSDTGIGMTAQEVARAPEPFVQSGRPFNKSRGGTGLGLSICRDLTSLHGGTLTIDSVK 362

Query: 779 EGVTTINCRIP 789
              TT+   +P
Sbjct: 363 GTGTTVTIHLP 373


>gi|284051252|ref|ZP_06381462.1| histidine kinase [Arthrospira platensis str. Paraca]
          Length = 1064

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 12/259 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R  + LT KN  L + + +K+ F+  +S+EL++PLT ++G + LLK   LG L+
Sbjct: 327 DITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKALGELS 386

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q++Y + I  S   L+ +VNDILDL  ++ G ++L    + +  + +   +++     
Sbjct: 387 DRQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALEAVLHLHQ 446

Query: 664 ENNIRIKVISDGK----------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + +I+    S G           L +  AD  RL Q+   ++SNA  F+  G ++ L+  
Sbjct: 447 QGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGSMGLRVN 506

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           R     +F+V + G  IPE     +F +F  + +    Q  G GLGL + +    LHGG 
Sbjct: 507 RWEDWIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLTRQFEGTGLGLVLCQRLARLHGGD 566

Query: 772 VSISSSDEGVTTINCRIPS 790
           +S  S     T     +P 
Sbjct: 567 ISFISHKGKGTEFTLLLPP 585


>gi|300867078|ref|ZP_07111745.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334909|emb|CBN56911.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1214

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 148/323 (45%), Gaps = 30/323 (9%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           IA   +   + +  W   AA   ++     + QG      D   ++   PL    T++  
Sbjct: 338 IAQPLAFSTSTAPSWCAIAAKPDNYTCTSPAHQG-----KDRTWQFVKQPLSETLTLVLA 392

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT+     + L  KN  L + + +K+ F+  +S+EL++PLT ++G + LLK   +G L
Sbjct: 393 QDVTEEQLVAKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDRAIGEL 452

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---------- 652
           N +Q++Y + I  S   L+ +VNDILDL  ++ G M+L    + +  + +          
Sbjct: 453 NDRQARYAKLIHQSGRHLMTVVNDILDLTRMETGQMELIVEPVQIAAVCDRAFEGAKLLQ 512

Query: 653 --EVKQSIATKMHENNIRIKVISDGK----------LGSFVADRQRLLQIFSKILSNAMD 700
             E K + A     N       SD            L   VAD  RL Q+   +LSNA+ 
Sbjct: 513 QQEDKPTAARDDPTNRDSTSGKSDSPIDFTLEIESGLAHIVADELRLRQMLVNLLSNALK 572

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F++ G+ + LK     G   F+V + G  IP D    +F +F        RR  G GLGL
Sbjct: 573 FTAPGAAIGLKVNHWEGWIAFTVWDTGIGIPADKQHLIFQKFQQLESPLTRRFQGTGLGL 632

Query: 759 SIVESFINLHGGHVS-ISSSDEG 780
            + +    LHGG VS ISS  +G
Sbjct: 633 VLTQRLARLHGGDVSFISSEGQG 655


>gi|296107724|ref|YP_003619425.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy]
 gi|295649626|gb|ADG25473.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy]
          Length = 816

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 10/246 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E N+ L + D+IK  F  +VS+ELR+PL  I+G  ++L   K   L S     +
Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEK--RLPSFVLNTL 234

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  ++ ILL  VND+L+++ +DAG M L+Y+ I   DL+  ++Q+IA    +   R  
Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKF 291

Query: 671 VISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           V S        A  D  ++  +   ILSNA+ F+ + + V ++ A+ N +     +++NG
Sbjct: 292 VFSMDLPDELQAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQIEDNG 351

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           S IP D+C+++F RF        R   G GLGLSI + F+ LHGG +   ++  G     
Sbjct: 352 SGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIFT 411

Query: 786 CRIPSK 791
             +P K
Sbjct: 412 IELPLK 417



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 22/223 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620
           ++KA++  + FV H S++L++PL  +      ++   LG + S+QS+ Y+  +   ++ +
Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674
             L++ +L  A   +G +     TI  + L+ ++       Q++  ++ +    + V++ 
Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPVLNT 699

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
            +L         L ++F+ +L N++    +    I+   ++   F  F V ++G  I + 
Sbjct: 700 CELP--------LREVFTALLDNSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F  F +   R +    G+GLSI +  +   GG +S+ S
Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794


>gi|170690462|ref|ZP_02881629.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170144897|gb|EDT13058.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 1202

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 131/238 (55%), Gaps = 11/238 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D +RA+  L    E L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +
Sbjct: 466 ADLLRAQDDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEE 525

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKM 662
           Q +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ ++  L    E+ + +A   
Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVNVELETVSIDATLQSLEELFKPLAGAK 585

Query: 663 HENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           H + +  R+  + D    + V+D QR+ QI   +LSNA+ F++ G   +  A  D+    
Sbjct: 586 HLSLVFDRLPGVPD----TMVSDGQRVTQILRNLLSNAVKFTAHGEVALSVAPADDDMLR 641

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V+++G  IP D  + +F  F     +   Q  G GLGLSI   F  L GG ++++S
Sbjct: 642 IDVRDSGIGIPADKLEMIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVAS 699


>gi|148359676|ref|YP_001250883.1| response regulator TutC [Legionella pneumophila str. Corby]
 gi|148281449|gb|ABQ55537.1| response regulator TutC [Legionella pneumophila str. Corby]
          Length = 816

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 10/246 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E N+ L + D+IK  F  +VS+ELR+PL  I+G  ++L   K   L S     +
Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEK--RLPSFVLNTL 234

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  ++ ILL  VND+L+++ +DAG M L+Y+ I   DL+  ++Q+IA    +   R  
Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKF 291

Query: 671 VISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           V S        A  D  ++  +   ILSNA+ F+ + + V ++ A+ N +     +++NG
Sbjct: 292 VFSMDLPDELQAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQIEDNG 351

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           S IP D+C+++F RF        R   G GLGLSI + F+ LHGG +   ++  G     
Sbjct: 352 SGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIFT 411

Query: 786 CRIPSK 791
             +P K
Sbjct: 412 IELPLK 417



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 22/223 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620
           ++KA++  + FV H S++L++PL  +      ++   LG + S+QS+ Y+  +   ++ +
Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674
             L++ +L  A   +G +     TI  + L+ ++       Q++  ++ +    + V++ 
Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPVLNT 699

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
            +L         L ++F+ +L N++    +    I+   ++   F  F V ++G  I + 
Sbjct: 700 CELP--------LREVFTALLDNSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F  F +   R +    G+GLSI +  +   GG +S+ S
Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794


>gi|323136675|ref|ZP_08071756.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
 gi|322397992|gb|EFY00513.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
          Length = 511

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 10/242 (4%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607
           E+A    +EA R+A+E    K+ F+  +S+ELR+PL  I+GF+++LK    G   N    
Sbjct: 243 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVLKGELFGPHANPAYR 302

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I +S   LL L+N+ILDL+ V+AG  +L   ++ L  +  E +  +  +  + +I
Sbjct: 303 DYSNDIHSSGQHLLMLINEILDLSRVEAGRYELKEESVSLVGVAQECRHLLTIRAQKRDI 362

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
           R+  + +  L    AD + + Q+   +L+NA+ F+ +G  V +K       G +I ++K+
Sbjct: 363 RMIEVVEPSLPRIWADERAVRQVILNLLTNAIKFTPQGGQVTIKVGWTSAGGQYI-AIKD 421

Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           NG  IPED    V + F     A +    G GLGL IV+  + LHGG   + S   EG  
Sbjct: 422 NGPGIPEDEIAVVMSSFGRGMLAQKNADEGTGLGLPIVKGLVELHGGQFVLKSKVREGTD 481

Query: 783 TI 784
            I
Sbjct: 482 AI 483


>gi|189466077|ref|ZP_03014862.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
 gi|189434341|gb|EDV03326.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
          Length = 1045

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 129/245 (52%), Gaps = 5/245 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  L    E   +++ +K++F+ ++S+E+R+PL  I+GF+ +L  +       
Sbjct: 662 ITGRKKMEEDLITAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILADT---EEQE 718

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +Y+  I  ++T+LL LV DIL+L+ +++G ++  +S + LN L  E+++S   +   
Sbjct: 719 EKEEYINIIENNNTLLLQLVGDILELSKIESGTLEFVFSDLDLNALFKEIEESAQLRQKN 778

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + I+ I +    +   +R RL Q+ + +L+NAM F+  GS       +D     F V 
Sbjct: 779 EAVPIRYIPEMPDCTVNIERNRLTQVMTNMLNNAMKFTYSGSVTFGYRLKDTDSLYFYVT 838

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  I ED   +VF RFV      Q  G GLGLSI +S +   GG + + S     +T 
Sbjct: 839 DTGCGIEEDKKDTVFGRFVKLDSFSQ--GTGLGLSICQSVVENLGGSIGVESEPGKGSTF 896

Query: 785 NCRIP 789
              +P
Sbjct: 897 WFTLP 901


>gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 586

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A++KAD+I+  FV +VS+ELR+P+T I G+ + L +  L     ++ +++  I   +  L
Sbjct: 351 AMKKADQIRRDFVANVSHELRTPVTVIKGYAETLLSGDLADDPGRRDRFLGIIQNHADRL 410

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV D+L L+ +++G + +    +++ D + +    ++ +  E  I +++ S   + S 
Sbjct: 411 SDLVRDLLALSELESGELAMQPQKVLIEDAVRQALLLLSPRAEEKGIVMELGSCAPV-SA 469

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +ADR RL Q+   +L NA+ +S +G  + ++AA +      SV++NG  IPE     +F 
Sbjct: 470 MADRGRLDQVLINLLENAIKYSGQGGRIQVEAAEEGEMVRVSVRDNGIGIPEKDLPRLFE 529

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           RF  V  A   +R G GLGLSIV+  +  HGG V + S+
Sbjct: 530 RFYRVDEARSRERGGTGLGLSIVKHIVMAHGGSVFVEST 568


>gi|70730615|ref|YP_260356.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344914|gb|AAY92520.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1164

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 3/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L E+ E L+++ + K+ F+ ++S+ELR+PL + +    LL  +   +L+ +Q ++ 
Sbjct: 476 AQTQLEERAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSPEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      +  L++ ++        +  +  K
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENASVPRLVDGLRSLFQPLTQDKGLEFK 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V +  G       DRQR+ QI   +LSNA+ F+ KG   +  +A+      F+V+++G  
Sbjct: 596 VELQPGAPQMLFTDRQRVEQILKNLLSNAVKFTEKGQVSLTVSAQPGAGIAFAVQDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I +D  +S+F  F        RR  G GLGLSI      L GG +S+SS
Sbjct: 656 IAQDQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLATLLGGSISVSS 704


>gi|54298027|ref|YP_124396.1| sensor histidine kinase [Legionella pneumophila str. Paris]
 gi|53751812|emb|CAH13236.1| sensor histidine kinase [Legionella pneumophila str. Paris]
          Length = 816

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 134/247 (54%), Gaps = 12/247 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E N+ L + D+IK  F  +VS+ELR+PL  I+G  ++L   K   L S     +
Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEK--RLPSFVLNTL 234

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNI 667
             I  ++ ILL  VND+L+++ +DAG M L+Y+ I   DL+  ++Q+IA    ++ E   
Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKF 291

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
              +    +L + + D  ++  +   ILSNA+ F+ + + V ++ A+ N +     +++N
Sbjct: 292 VFSMDLPDELQAQM-DPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQIEDN 350

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           GS IP D+C+++F RF        R   G GLGLSI + F+ LHGG +   ++  G    
Sbjct: 351 GSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIF 410

Query: 785 NCRIPSK 791
              +P K
Sbjct: 411 TIELPLK 417



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 106/223 (47%), Gaps = 22/223 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620
           ++KA++  + FV H S++L++PL  +      ++   LG + S+QS+ Y+  +   ++ +
Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674
             L++ +L  A   +G +     TI  + L+ ++       Q++  ++ +    + +++ 
Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPILNT 699

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
            +L         L ++F+ +L N++    +    I+   ++   F  F V ++G  I + 
Sbjct: 700 CELP--------LREVFTALLDNSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F  F +   R +    G+GLSI +  +   GG +S+ S
Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794


>gi|54294995|ref|YP_127410.1| sensor histidine kinase [Legionella pneumophila str. Lens]
 gi|53754827|emb|CAH16314.1| sensor histidine kinase [Legionella pneumophila str. Lens]
          Length = 816

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 133/247 (53%), Gaps = 12/247 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E N+ L + D+IK  F  +VS+ELR+PL  I+G  ++L   K   L S     +
Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGPLEMLLAEK--KLPSFVQNTL 234

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNI 667
            +I  ++ ILL  VND+L+++ +DAG M L+Y+ I   DL+  ++Q+IA    ++ E  +
Sbjct: 235 RHIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKL 291

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
              +    +L + + D  ++  +   ILSNA+ F+ + + V ++  + N +     +++N
Sbjct: 292 VFSMDLPDELQAQI-DPDKMQHVLINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDN 350

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP D+C+++F RF        R   G GLGLSI + F+ LHGG +    +  G    
Sbjct: 351 GPGIPSDLCETIFERFFQIEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGDARNGGAIF 410

Query: 785 NCRIPSK 791
              +P K
Sbjct: 411 TIELPLK 417



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 107/223 (47%), Gaps = 22/223 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620
           ++KA++  + FV H S++L++PL  +      ++   LG + S+QS+ Y+  +   ++ +
Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674
             L++ +L  A   +G +     TI  + L+ ++       Q++  ++ +    + V++ 
Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPVLNT 699

Query: 675 GKLGSFVADRQRLLQIFSKILSNAM-DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            +L         L ++F+ +L N++    SK   +I+     +  + F V ++G  I + 
Sbjct: 700 CELP--------LREVFTALLDNSIRHHHSKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F  F +   R +    G+GLSI +  +   GG +S+ S
Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794


>gi|312886589|ref|ZP_07746197.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311300992|gb|EFQ78053.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 1025

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 11/239 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +TD   AE+AL +  E    A   K  F+  +S+E+R+P+  +IGFT LL    L +   
Sbjct: 625 ITDRKLAEQALIQAKEQAENAASAKTQFLSTMSHEIRTPMNAVIGFTHLL----LQNPRE 680

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q +Y++ +  S   LL L+NDILD + ++AG ++  +    L DL+  ++ ++  +  E
Sbjct: 681 DQVEYLKILKFSGENLLVLINDILDFSKIEAGKLEFEHVDFNLKDLVRNIRAAMQQRAIE 740

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFI- 720
             I++K++ D  L  + + D  RL QI S ++SNA+ F+S G  V+  +  +R+N   I 
Sbjct: 741 KGIQLKLLVDEDLPQAVIGDPVRLGQILSNLISNALKFTSVGKVVVSASLVSRNNEYTIV 800

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F VK+ G  IP +  +++F  F   +    R+  G GLGL+I +  + + G  + + S
Sbjct: 801 SFEVKDTGIGIPTEKQQAIFESFTQASSDTTRKYGGTGLGLTITKRLLEMQGSAIQLDS 859


>gi|182412780|ref|YP_001817846.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839994|gb|ACB74246.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 734

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L E+      A   KN+F+ ++S+E+R+P+  I+GF+DLL T      +SK  Q V 
Sbjct: 214 ERLLAEQAIRAESAAREKNAFLANMSHEIRTPMNAILGFSDLLATEL--PADSKARQRVR 271

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+T LL L+NDILDL+ +DAG+++L+     L +L + +    A +     + ++ 
Sbjct: 272 AIRESATSLLQLINDILDLSKIDAGVVELHPEPTDLRELSDFMHTVFAQQAARKTLVLEC 331

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGDFIFSV 723
             D  L  + + DR RL QI   ++ NA+ F+  G TV L        A R +G     V
Sbjct: 332 EIDPALPHALMLDRSRLRQIVVNLIGNAIKFTEHG-TVKLGIRWAHHPANRGSGTLEIEV 390

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHR-GQRRGVGLGLSIVESFINLHGGHVSISS 776
            + G  IP +  + +F  FV  +  R G+++G GLGLSIVE      GG V++ S
Sbjct: 391 ADTGVGIPPEKQREIFQPFVQVDPQRAGEKQGSGLGLSIVERITQRMGGTVTLQS 445


>gi|13475583|ref|NP_107147.1| two-component sensor [Mesorhizobium loti MAFF303099]
 gi|14026335|dbj|BAB52933.1| two-component sensor [Mesorhizobium loti MAFF303099]
          Length = 638

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 7/246 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +T  +   R +TE+    ++  ++KN F+  VS+ELR+PLT+I G   L+    +G L 
Sbjct: 122 KITGVITYNREITEQ----KRNAQLKNDFISTVSHELRTPLTSIRGSLGLIAAGVVGELP 177

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K +  V     +S  L+ L+NDILD+  +++G++      + +  ++ +   + +  M 
Sbjct: 178 PKAANLVNIAHTNSERLVLLINDILDMEKIESGVIAFKIKQMPVRPIMEQAIAASSNYMA 237

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           E+ IRI ++ D        D  RL Q+ + +LSNA+ FS    TV++K  R + D +  S
Sbjct: 238 ESRIRIVLVDDAPRAEANIDPDRLHQVMANLLSNAIKFSHADGTVMVKLQRRDRDMLRIS 297

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G+ IPE     +F +F        R+  G GLGLSIV++ +   GG VS  + +E 
Sbjct: 298 VIDQGAGIPEAFRSRIFGKFEQADASSTRKKGGTGLGLSIVKTIVEKLGGAVSFETEEEK 357

Query: 781 VTTINC 786
            T+ + 
Sbjct: 358 GTSFHV 363


>gi|186683956|ref|YP_001867152.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466408|gb|ACC82209.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 609

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 131/242 (54%), Gaps = 3/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L+  N+ L + +++KN F+ + S+E+R+PL++IIGFT+LL          +Q +Y+  
Sbjct: 217 QQLSNSNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTNLLLAPGYEPTIERQREYLNI 276

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LL L+NDILDL+ ++A  +++ +  + +  L + V   +  K    ++R+ + 
Sbjct: 277 IQSSGKHLLALINDILDLSKIEANQLEVQWECVDVPLLCSNVLALVKEKAANKDLRLCLE 336

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  + + VAD  RL Q+   +L NA+ F+SKGS V L+         F+V + GS I +
Sbjct: 337 IDPDITTLVADSLRLKQMLLNLLFNALKFTSKGS-VGLQVVAKGISVHFTVWDTGSGISQ 395

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F  +  ++ A  G   G GLGL++      +HGG V + S  +  +     +P 
Sbjct: 396 EDQTQLFEPYFQIAKAVAGGAEGTGLGLAVTRKLAQIHGGSVKVESEVDSGSRFTLVLPL 455

Query: 791 KE 792
           ++
Sbjct: 456 QQ 457


>gi|291568305|dbj|BAI90577.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 358

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 129/229 (56%), Gaps = 10/229 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +NE L +A  +K+ F+ ++S+ELR+PL  I+G T+ L+    G +N +Q + ++ +  S+
Sbjct: 98  RNEELIRAKRLKDEFLANMSHELRTPLNAILGMTEGLQEEVFGPVNDRQLKALQTVERSA 157

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           + LL L+NDILD+A +++G ++L  S   +  L       I  +  +  I++ V    KL
Sbjct: 158 SHLLALINDILDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLKL 217

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARD-NGD---FIFSVKNNGSS 729
              + D +R+ Q+   +L+NA+ F+ +G +    VIL   R+  G+     FSV++ G  
Sbjct: 218 PDIILDERRIRQVLINLLNNAVKFTPEGGSITLEVILPQPREAEGESPYLRFSVRDTGIG 277

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I  +  K +F  F  + +A   Q +G GLGL++ +  + LHGG V ++S
Sbjct: 278 ISPENIKKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTS 326


>gi|150009899|ref|YP_001304642.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938323|gb|ABR45020.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1041

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 133/232 (57%), Gaps = 5/232 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ++D    ER L E      +++ +K++F+ ++S+E+R+PL  I+GF+++L  + +  L  
Sbjct: 657 ISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDV--LEE 714

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ +Y E I  ++ +LL L+NDILDL+ ++AG ++  YS + +N LL+++++S++ ++  
Sbjct: 715 KQ-EYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVVN 773

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            N+R+      K       + RL+Q+   +L+NA+ F+ +GS     +  +     F V 
Sbjct: 774 ENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFTDQGSISYGYSCLNKKMLRFYVS 833

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  I  +  +++F+RFV      Q  G GLGLSI    ++  GG + + S
Sbjct: 834 DTGRGISVEQQEAIFDRFVKLDSFAQ--GTGLGLSICRMIVDHLGGEMGVES 883


>gi|119469670|ref|ZP_01612539.1| putative sensor protein [Alteromonadales bacterium TW-7]
 gi|119446917|gb|EAW28188.1| putative sensor protein [Alteromonadales bacterium TW-7]
          Length = 1118

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 137/245 (55%), Gaps = 18/245 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           + AE+ L E  E   +A   K+ F+  +S+E+R+P+  ++G  +++K +KL   + +Q+ 
Sbjct: 587 IEAEQELVEAKELAEQAVAAKSEFLATMSHEIRTPMNGVLGMLNIIKQTKL---DQQQAH 643

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN--DLLNEVKQSIATKMHENN 666
           ++E   +S+  LLN++NDILD + ++AG  KLN  +I  N   LL EV +S A K+ +NN
Sbjct: 644 HIELAQSSAESLLNIINDILDFSKMEAG--KLNIDSIQFNLPKLLGEVVESFALKVEQNN 701

Query: 667 IRIKVISDG---KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-- 721
              K+I D     +   ++D  RL QI + ++ NA+ F+  G  +I+    D+ D  F  
Sbjct: 702 --TKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVIIIARVDDSTDGAFLE 759

Query: 722 -SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  I ++   S+FN F        R+  G GLGL+IV+    L  G V+++S +
Sbjct: 760 CSVIDTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMDGSVNVNSVE 819

Query: 779 -EGVT 782
            EG T
Sbjct: 820 GEGST 824


>gi|255012859|ref|ZP_05284985.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1041

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 133/232 (57%), Gaps = 5/232 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ++D    ER L E      +++ +K++F+ ++S+E+R+PL  I+GF+++L  + +  L  
Sbjct: 657 ISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDV--LEE 714

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ +Y E I  ++ +LL L+NDILDL+ ++AG ++  YS + +N LL+++++S++ ++  
Sbjct: 715 KQ-EYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVVN 773

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            N+R+      K       + RL+Q+   +L+NA+ F+ +GS     +  +     F V 
Sbjct: 774 ENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFTDQGSISYGYSCLNKKMLRFYVS 833

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  I  +  +++F+RFV      Q  G GLGLSI    ++  GG + + S
Sbjct: 834 DTGRGISVEQQEAIFDRFVKLDSFAQ--GTGLGLSICRMIVDHLGGEMGVES 883


>gi|312960833|ref|ZP_07775338.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
 gi|311284491|gb|EFQ63067.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
          Length = 1165

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 141/248 (56%), Gaps = 9/248 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A++ L ++ E L+++ + K+ F+ ++S+ELR+PL + +    LL  +   +L+++Q ++
Sbjct: 475 QAQQELEDRAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVKF 534

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENN 666
            E I ++   LLNL+NDILD++ V+AG +++   N S   L D L  + + +A    +  
Sbjct: 535 AESIYSAGNDLLNLINDILDISKVEAGKLEVRPDNSSVARLVDGLRGMFEPLAAD-RKLG 593

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725
            +++V  D     F  DRQRL QI   +LSNA+ F+ +G  V L  +R  G+ I FSV++
Sbjct: 594 FQVQVQPDAPAMLFT-DRQRLEQILKNLLSNAIKFTEQGE-VSLSVSRAPGEGIAFSVRD 651

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I  D  +S+F  F        RR  G GLGLSI      L GG++S++S+    +T
Sbjct: 652 SGIGIAPDQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGYISVTSAPGKGST 711

Query: 784 INCRIPSK 791
               +P +
Sbjct: 712 FTLVLPEQ 719


>gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 1118

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 126/525 (24%), Positives = 227/525 (43%), Gaps = 80/525 (15%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-------AFLATNPSNDELLEFLRSAN 363
           IL +L V + I D +  + + N  F  +WE+ L        F+     N EL  +     
Sbjct: 320 ILRSLPVGVLILDNDHRILYINDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRY--DGT 377

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           + PE++    +++++F   +  E  +  W             SN R   +  + ++T   
Sbjct: 378 QTPEEI--YDFRKHLFET-EEPEPIELGWAGGKSVIFDSRRISNDR--ILLTYADITAVR 432

Query: 424 DLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + E + +        L ++  +    + +G+A+   DG IK+SN A              
Sbjct: 433 ERENEVHEARAALEHLGELLRDATHAMPQGLAIV-QDGIIKMSNEAL------------- 478

Query: 477 GTHIRNIAATCSRYYNESDGW----DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
             HI  I AT   Y     GW    D  AA     +D  + LQG  + ++      + +P
Sbjct: 479 -AHILEIPAT---YIETGQGWLGMFDFCAARGDFHEDAAEILQGWRDNIA------ARLP 528

Query: 533 LPNA-------------------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +  A                     +  F +VT+    E  L +       AD  K+ F+
Sbjct: 529 ISTAFHVGGERWVNMDATVSKGQHWVALFTDVTELKGREEELRQLLSRAEAADRAKSEFL 588

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  ++G  +LL  +   +L+++Q  +V+ I  S   LL ++NDILD + +
Sbjct: 589 ANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFVDIIVKSGNALLTIINDILDFSKI 645

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFS 692
           DAG MKL  +   + + + +V   +++   E NI + V +   L  + + D  R  QI +
Sbjct: 646 DAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVT 705

Query: 693 KILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            ++ NA+ F+ +G   +      AA         +++ G  IP +  +SVF++F      
Sbjct: 706 NLVGNAVKFTERGHVFVDVGFQPAAGGEIMACIRIEDTGIGIPSEKLESVFDKFSQVDAS 765

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS--SDEGVTTINCRIP 789
             RR  G GLGL+I    ++L GG++++ S      V TIN   P
Sbjct: 766 STRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTINLPFP 810


>gi|291515688|emb|CBK64898.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 499

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 134/234 (57%), Gaps = 9/234 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    E   ++D +K++F+ ++S+E+R+PL  I+GF+ L+++ +L     ++++Y  
Sbjct: 239 EGQLVVAREKAEESDMLKSAFLANMSHEIRTPLNAIVGFSSLMQSEELS--QEERAEYCA 296

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            + ++S +LL L+NDILD+++++ G ++ NY++    D++   +  + T  H     ++ 
Sbjct: 297 IVVSNSEMLLTLLNDILDISSLECGKIRFNYAS---EDIVQICQHVMMTTAHTRQRGVEG 353

Query: 672 ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728
                +GSF+   D  RL QI   +L+NA  F+S+GS T+ ++   + G+ +FSV + G 
Sbjct: 354 RFACPVGSFMLTTDAHRLSQILINLLTNAGKFTSEGSITLGVEIDEERGEVLFSVADTGP 413

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            IP D    VFNRF       +++G GLGL+I      + GG + + S+  G T
Sbjct: 414 GIPPDKQDLVFNRF-EKLDGNKKKGTGLGLAICRQIAMIVGGRIWVDSAYTGGT 466


>gi|46200809|ref|ZP_00056331.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 549

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 6/246 (2%)

Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSK 605
           R +R L+E   + R+AD     K++F+ ++S+ELR+PL  IIGF+D L     G +  S+
Sbjct: 298 RMDRTLSELARSRREADAANRAKSAFLANMSHELRTPLNAIIGFSDALLVGIPGHTCQSR 357

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y+ ++  SS  LL+L+NDILDL+ ++AG  ++  +   L  L+ E  + +  K    
Sbjct: 358 CQDYLGHVQTSSRHLLSLINDILDLSKIEAGSTEIALAPTPLALLITECLEIVRAKAESK 417

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI + +    +      D +RL QI   +LSNA+ F+ +G  +IL+A  D+G    +V +
Sbjct: 418 NISVALAGPDQDLMVTTDSRRLRQIVLNLLSNAVKFTPEGGRIILEAECDSGQLALTVND 477

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + ++        F  N     RR  G GLGL + +    L GG +S++S     TT
Sbjct: 478 TGIGMTQEEIAVALTPFGQNDSDLARREAGTGLGLPLSKRLTELLGGTLSVTSIPGRGTT 537

Query: 784 INCRIP 789
           +   +P
Sbjct: 538 VTISLP 543


>gi|124005780|ref|ZP_01690619.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123988848|gb|EAY28454.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 662

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 18/258 (6%)

Query: 548 SVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           S+  E+ L + KNE L++ ++ K++F   +S+ELR+PL  IIG TDLL        N   
Sbjct: 140 SIELEKELLQLKNEELKRIEQFKSNFFAEISHELRTPLNGIIGLTDLLLEV---MTNPHH 196

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y++ I +S   L+ +VND+LD++ +++G M+   + I L ++L  +  S   K  +  
Sbjct: 197 ADYLKAIQSSGNHLVTIVNDVLDMSKIESGQMQFEETHINLPEMLQNIVLSFKQKFMQKG 256

Query: 667 IRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDNGDF 719
           I++  V++       + D+ RL QI   ++ NA+ F+S+G        V    + D  + 
Sbjct: 257 IQVNTVLATDVPEEVLGDKVRLTQILYNLVGNAIKFTSEGEVSIEITFVAPVPSADQAEQ 316

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           I   F VK++G  I ++  + +F  +   + +  R   G GLGLSIV   I L GGH+S+
Sbjct: 317 IQLDFIVKDSGIGIKKERLQQIFEPYQQASKQTTRLYGGTGLGLSIVRQLIELQGGHISV 376

Query: 775 SSS-DEGVTTINCRIPSK 791
           +S   EG T  N  +P K
Sbjct: 377 NSRWGEG-TIFNFVLPLK 393


>gi|17228780|ref|NP_485328.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130632|dbj|BAB73242.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 603

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+ L + +++KN F+ + S+E+R+PL++IIGFT LL          +  +Y+  I +S  
Sbjct: 223 NQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDPTRERHHEYLNIIQSSGK 282

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+NDILDL+ ++A  +++ +  + + +L   V   I  K     +++ +  D  + 
Sbjct: 283 HLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAANKGVKLSLELDPNIK 342

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +FVAD  RL Q+   +L NA+ F+++G TV LK  + +    F+V + GS I  +    +
Sbjct: 343 TFVADPLRLKQMLLNLLFNALKFTNQG-TVGLKVTQQDSFIHFTVWDTGSGISPENLALL 401

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F  +  + N+   Q  G GLGL +      +H G V + S
Sbjct: 402 FQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVES 441


>gi|114707276|ref|ZP_01440173.1| probable two-component sensor histidine kinase protein [Fulvimarina
           pelagi HTCC2506]
 gi|114537157|gb|EAU40284.1| probable two-component sensor histidine kinase protein [Fulvimarina
           pelagi HTCC2506]
          Length = 507

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 132/246 (53%), Gaps = 9/246 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-S 607
           ER+    +EA R+A++    K+ F+  +S+ELR+PL  I+GF++++     G L S    
Sbjct: 249 ERSRILSDEARRRAEDANRAKSQFLATMSHELRTPLNAILGFSEVMMNEIFGPLGSPNYK 308

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I +S   LL ++N+ILDL+ V+AG   LN   + L+ +  +   ++  +  +  I
Sbjct: 309 EYLTDIHSSGKHLLGVINEILDLSRVEAGQYALNEEAVDLSRIAADCASTVRLRAEDKRI 368

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I++  +  L +   D + L QI   +LSNA+ F+ K   +IL+       G ++  V +
Sbjct: 369 AIQMHFEEGLPALWGDERALRQIVLNLLSNAVKFTPKSGEIILRVGWTAGGGQYV-GVSD 427

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG+ IP+D   +V   F   SNA +   +G GLGL IV++ + LH G   +SS +   T 
Sbjct: 428 NGAGIPQDEIPTVLASFGQGSNAIKNAEQGTGLGLPIVQALVKLHDGQFELSSREGKGTD 487

Query: 784 INCRIP 789
           +    P
Sbjct: 488 VIAIFP 493


>gi|78357969|ref|YP_389418.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220374|gb|ABB39723.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 606

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 16/269 (5%)

Query: 529 SIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           ++ P+ + Q  +T V     +VT +   ER L    EA   AD  K+ F+  +S+E+R+P
Sbjct: 186 TVFPVRDGQGDVTMVAEYVRDVTATRNLERELRVAKEAAEAADRAKSEFLASMSHEIRTP 245

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  ++G  DL  T+   SL+ +Q +Y+E +  S+  LL+L+NDILD + ++AG+++L+  
Sbjct: 246 MNGVLGMLDLAMTT---SLDEEQREYLEAVQNSAEALLSLINDILDFSKIEAGMVELDQQ 302

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L+  L+ +      +  E N+   + IS         D  RL QI   +L NA  F+
Sbjct: 303 VFRLSKRLSSLHTMFVHRAAERNLEFAINISPDVPDGLSGDPLRLRQIVVNLLDNAFKFT 362

Query: 703 SKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            +G  V    +L+   +N    FSV++ G  I E   + +F+ F        RR  G GL
Sbjct: 363 DQGQVVLSVEVLERGAENVLLQFSVQDTGPGILERHQERIFDSFAQADASFTRRHQGSGL 422

Query: 757 GLSIVESFINLHGGHVSI-SSSDEGVTTI 784
           GL+I +    L GG + + S+  EG T +
Sbjct: 423 GLAICKRLTGLMGGDIKVRSTPGEGSTFV 451


>gi|89519308|gb|ABD75785.1| putative signal transduction histidine kinase [uncultured
           bacterium]
          Length = 1323

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 132/254 (51%), Gaps = 15/254 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + + EK + L  + + K+ F+ ++S+ELR+PL +++    LL  +K G+L  KQ +Y 
Sbjct: 622 ARKLIEEKAKDLELSSKYKSEFLANMSHELRTPLNSLLLLAKLLHENKNGNLTEKQVEYA 681

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I A+   LL L+N++LDL+ V+AG M LN   + L  L + V+Q+ A    E  ++++
Sbjct: 682 RTIHAAGADLLELINEVLDLSKVEAGKMVLNIEEMSLKGLASYVEQNFAHVAEEKGLKLR 741

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------- 720
           + ++D   G    DRQR+ QI   +LSNAM F+ +G   +  A    G  +         
Sbjct: 742 IELTDSLPGCIRTDRQRVEQIVKNLLSNAMKFTREGEVGVYIARPAAGVVLSHSGVLPHK 801

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               SV + G  IPED  + +F  F        R+  G GLGLSIV  F  L GG + + 
Sbjct: 802 AIAISVSDTGIGIPEDKQRLIFEAFQQADGTTSRKYGGTGLGLSIVREFTKLLGGEIHLR 861

Query: 776 SSDEGVTTINCRIP 789
           S +    T +  +P
Sbjct: 862 SEEGNGCTFSLYLP 875


>gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1599

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 138/256 (53%), Gaps = 12/256 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++++  +A++ L +  E    A+  K++F+ ++S+E+R+PLT I+G  ++L  S++ S 
Sbjct: 1029 IDISELEKAQQELIQAKEQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEML-ASEISSE 1087

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            N +  + ++    S+  L  +++DILDL+ V+AG M+L+    VL+ +L+ V+   A + 
Sbjct: 1088 NGR--RIMDMTRESARSLQRIIDDILDLSKVEAGRMELSSREFVLSAVLDRVQGLYAAQA 1145

Query: 663  HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
               N+R+ K +  G   + + D  RL QI   ++ NA+ F+S G   +     D+ D   
Sbjct: 1146 ENKNVRLSKSLDPGVQDNLLGDASRLEQILRNLVGNAVKFTSHGQVTLRARPADSQDGSS 1205

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 F V++ G  IPED    +F  F    ++ +   +G GLGL+I      L GG+++
Sbjct: 1206 KQVVRFEVQDTGPGIPEDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQLTRLMGGNIN 1265

Query: 774  ISSSDEGVTTINCRIP 789
            + S+    +T    IP
Sbjct: 1266 VESAPGEGSTFVAEIP 1281


>gi|163794230|ref|ZP_02188202.1| periplasmic sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159180398|gb|EDP64919.1| periplasmic sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 559

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 124/239 (51%), Gaps = 11/239 (4%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGS 601
           RA   L+E    +R A          K+SF+  +S+ELR+PLT IIGF+ +LK   + G 
Sbjct: 300 RANEQLSENAAQVRSALQSAEHATRAKSSFLAGISHELRTPLTAIIGFSQILKIQHRPGK 359

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             S++ +Y E I  SS  LLNLVNDILDL+ +++G  +L+ + I L    N V+  +A +
Sbjct: 360 TKSREQEYAEIIHDSSQHLLNLVNDILDLSKIESGSYELDETWIDLVREANAVRALLAHE 419

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFI 720
                I + +    +L +   D + + QI   ++SNA+ F+ +G  V L      +G  +
Sbjct: 420 ASRRGIAVSLDLQDQLPALYGDIKGIRQIVINLVSNALKFTDRGGWVRLSMRVESDGGLL 479

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             + +NG+ IP D   S++  F    N       G GLGL +V+   NLH   V + S+
Sbjct: 480 LEISDNGAGIPTDEQSSIWEAFKRARNPGLSTAEGAGLGLHLVKILANLHDAEVGLEST 538


>gi|150009789|ref|YP_001304532.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938213|gb|ABR44910.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1045

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 131/234 (55%), Gaps = 5/234 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  + E  L    +   +++++K++F+ ++S+E+R+PL  I+GF+++L ++    L
Sbjct: 657 ISITERKQLEHDLRMARDKAEESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTD--DL 714

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             K+ ++ + I  ++++LL L+NDILDL+ ++AG ++  Y  + +N +L +++QS   K 
Sbjct: 715 EDKK-EFADIIENNNSLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKN 773

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +++I      +      DR RL Q+   +L+NAM F+  G        RD+    F 
Sbjct: 774 KNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLNNAMKFTQAGLISFGYKLRDDNTLWFY 833

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IPE+  K +F RFV      Q  G GLGLSI E  +    G + + S
Sbjct: 834 VEDTGCGIPENKRKDIFGRFVKLNTFAQ--GTGLGLSICEMIVTQMKGTIGVDS 885


>gi|148548085|ref|YP_001268187.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida F1]
 gi|148512143|gb|ABQ79003.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 978

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 25/284 (8%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572
            +++S++P+ N +  + ++     N+TD  +AE  L  KN       E +RK D  K+ F
Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITDKKKAEAMLALKNQELEQSVECIRKLDNAKSDF 184

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
              VS+ELR+PL+ I+G  + +  ++ G  +    Q+ E I  ++  LL  VN +LDLA 
Sbjct: 185 FAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689
           +DA  M L+Y    L+ L   +  +      + +I      D KL    VA  D ++  +
Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299

Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           I   +LSNA  F+  G  +   L  +R N   + +V ++G  IP  + K +F RF   + 
Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GQ+  RG GLGLSIV+ F+ LH G +S+S +  G      ++P
Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           I L  L+ +    +      N++ + V++D +L     D  ++ Q+   +  NA++  S+
Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884

Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
                 +     +  D GD  + SVK+ G  I E     +FN F +     ++ G+G+GL
Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I  +   +H G + +     G       IP+++
Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974


>gi|302334933|ref|YP_003800140.1| integral membrane sensor signal transduction histidine kinase
           [Olsenella uli DSM 7084]
 gi|301318773|gb|ADK67260.1| integral membrane sensor signal transduction histidine kinase
           [Olsenella uli DSM 7084]
          Length = 657

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + LR A+  K+ F+ ++S+ELR+PL +IIGF  LL+ +  G LN+ Q++Y E I  S   
Sbjct: 407 DELRAANRHKSQFLANISHELRTPLNSIIGFASLLQENVAGDLNATQTRYAEIIIESGGH 466

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+NDIL L  +D  + KL  S + + + +      I     E    ++VI   +L  
Sbjct: 467 LLDLINDILQLVKLDTSVDKLKLSRVSVIEAIRNPVDLIRPLADERGQGLEVIVADELDG 526

Query: 680 FVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCK 736
           + A  D Q++ QI   +LSNA+ FS  G  + +KA+    +F+F  V +NG  I  DM +
Sbjct: 527 YTAYWDEQKVHQILLNLLSNAVKFSPDGGRIRVKASLVEENFVFIHVIDNGIGISNDMKE 586

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            VF  F    N++    +G GLGL+I +  + +H G + +  +  G
Sbjct: 587 RVFLAFEQADNSYTRIYKGAGLGLAITKDLVEMHSGRIWLEDAPGG 632


>gi|87307716|ref|ZP_01089859.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87289330|gb|EAQ81221.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 636

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L + + +K+ F+ ++S+ELR+PL +I+GF+D+L  S + SLN KQ +YV+ I 
Sbjct: 342 LARVNVQLYEMNRVKSDFLANMSHELRTPLNSILGFSDVL--SDIDSLNDKQKRYVQNIQ 399

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S  +LL+++NDILDLA +++G M++  S   +  ++      + + + E N+ ++  + 
Sbjct: 400 KSGRLLLDMINDILDLAKIESGRMEVRPSEFSVAAVVRANCDMVRSLIEEKNLDLECDVH 459

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           DG    F  D+ +L QI + +LSNA+ F+ +G  +  + +R+      +V++ G  I E+
Sbjct: 460 DGGEPMF-QDQTKLQQILTNLLSNAIKFTPEGGRITCRVSREADMMKLAVEDTGVGIAEE 518

Query: 734 MCKSVFNRFVSNAHRGQR-------RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + +F +F   A   +         G GLGLSIV     L  G + + S     +T   
Sbjct: 519 DREIIFEKFRQGAVSPRNDSLTREFSGTGLGLSIVMEICKLLDGSIEMESQLGSGSTFTI 578

Query: 787 RIP 789
           RIP
Sbjct: 579 RIP 581


>gi|299133494|ref|ZP_07026688.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591330|gb|EFI51531.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 600

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 132/249 (53%), Gaps = 3/249 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+AL    +   +A   K+ F+  +S+ELR+PL  IIGF++++       L+
Sbjct: 320 DVTERKMQEQALEAARQEAEQAGASKSRFLATMSHELRTPLNAIIGFSEMIAREDEMKLD 379

Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++ +Y   I+ S   LL++VN ILD++ +++G  +L        + L+     +  K 
Sbjct: 380 AARRREYAGLINESGLHLLSVVNGILDMSKMESGKFELVSEPFAPREALSSCCNLMVLKA 439

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +N I +       L     D +   QI   +LSNA+ F+ +G +V + A  +  + +  
Sbjct: 440 RDNGIDLTTRMPSDLPQMTGDARAFKQILLNLLSNAIKFTGEGGSVTVSAQVEGRELLLR 499

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I +D    + N F     +++G+R G GLGLSIV+S ++LHGG + + S  + 
Sbjct: 500 VADTGIGIGKDDLARLGNPFFQAGASYQGRREGTGLGLSIVKSLVSLHGGEMKVESELDR 559

Query: 781 VTTINCRIP 789
            TTI+ R+P
Sbjct: 560 GTTISVRLP 568


>gi|291570932|dbj|BAI93204.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1057

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 12/259 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R  + LT KN  L + + +K+ F+  +S+EL++PLT ++G + LLK   LG L+
Sbjct: 325 DITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKALGELS 384

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q++Y + I  S   L+ +VNDILDL  ++ G ++L    + +  + +   +++     
Sbjct: 385 DRQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIKTVCDRALEAVLHLHQ 444

Query: 664 ENNIRIKVISDGK----------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + +I+    S G           L +  AD  RL Q+   ++SNA  F+  G  + L+  
Sbjct: 445 QGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGYMGLRVN 504

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           R     +F+V + G  IPE     +F +F  + +    Q  G GLGL + +    LHGG 
Sbjct: 505 RWEDWVVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQRLARLHGGD 564

Query: 772 VSISSSDEGVTTINCRIPS 790
           +S  S     T     +P 
Sbjct: 565 ISFISHQRKGTEFTLLLPP 583


>gi|260463553|ref|ZP_05811752.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
 gi|259030644|gb|EEW31921.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
          Length = 1307

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 135/263 (51%), Gaps = 5/263 (1%)

Query: 533  LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            LPN       V ++T   RAE  LT+      +A   K  F+  +S+E+R+PL  IIGF+
Sbjct: 1039 LPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFS 1098

Query: 592  DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L+   K G + N +   Y+  I+ S   +L+LVND+LD++ ++AG  ++ Y  + LND 
Sbjct: 1099 ELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDT 1158

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            L E    +  + +   + I+     +L   VAD + + QI   ILSNA+ ++  G  VI+
Sbjct: 1159 LAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIV 1218

Query: 711  KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
              A + +GD +  V++ G  + +   +     F  ++   RG+  G GLGL + ++ +  
Sbjct: 1219 STAYETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEA 1278

Query: 768  HGGHVSISSSDEGVTTINCRIPS 790
            +    +I+S+    T +    PS
Sbjct: 1279 NRARFTINSTPGEGTLVEVAFPS 1301


>gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
 gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
          Length = 960

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 135/253 (53%), Gaps = 20/253 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N   ++   R +T+++E     +++K+  V  VS+ELR+PL++I+GFT+L+   KL    
Sbjct: 561 NKVGTIFVHRDITKQHEV----EQMKSELVSTVSHELRTPLSSILGFTELMLHRKLKP-- 614

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----KQSI 658
            KQ +Y++ I   +  L NL+ND LDL  +++G       ++ + DL++EV       S 
Sbjct: 615 EKQEKYLKTIHKEANRLTNLINDFLDLQRMESGGQMYTNESLDIRDLISEVLTRFEAYSE 674

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +H  N+  K I  G       D +R+ Q+ + I+SNA+ FS  G  +    A ++  
Sbjct: 675 KHTLHFINLAEKTIIQG-------DSERIQQVITNIISNAIKFSPNGGDITTTLASNSTS 727

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SVK++G  IPE+  K++F +F  + N+ R +  G GLGL I +  +  H G +S+ S
Sbjct: 728 LFVSVKDDGLGIPENEMKNLFRKFYRIDNSDRKKIGGTGLGLPICKEIVEAHNGTISVES 787

Query: 777 SDEGVTTINCRIP 789
            +   +T    +P
Sbjct: 788 KENEGSTFIIELP 800


>gi|74484333|gb|ABA10818.1| bZIP histidine kinase [Pseudomonas putida]
          Length = 978

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 25/284 (8%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572
            +++S++P+ N +  + ++     N+TD  +AE  L  KN       E +RK D  K+ F
Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITDRKKAEAMLALKNQELEQSVECIRKLDNAKSDF 184

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
              VS+ELR+PL+ I+G  + +  ++ G  +    Q+ E I  ++  LL  VN +LDLA 
Sbjct: 185 FAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689
           +DA  M L+Y    L+ L   +  +      + +I      D KL    VA  D ++  +
Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299

Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           I   +LSNA  F+  G  +   L  +R N   + +V ++G  IP  + K +F RF   + 
Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GQ+  RG GLGLSIV+ F+ LH G +S+S +  G      ++P
Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           I L  L+ +    +      N++ + V++D +L     D  ++ Q+   +  NA++  S+
Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884

Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
                 +     +  D GD  + SVK+ G  I E     +FN F +     ++ G+G+GL
Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I  +   +H G + +     G       IP+++
Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974


>gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010]
 gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010]
          Length = 929

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 132/245 (53%), Gaps = 12/245 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF ++T +  AE+ L    E   +A+  K+ F+ ++S+ELR+PL  +IG  +LL  +   
Sbjct: 265 TFEDITQAKIAEQELIVAKEQAEQANIAKSQFLANMSHELRTPLNGVIGTLNLLAAT--- 321

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SLN++QS  V     S+  L  L+ND+LDL+ +++G ++L Y    L++LL EV + +A 
Sbjct: 322 SLNARQSNLVNISKHSAESLFGLLNDVLDLSKIESGKLELEYHNEDLDELLAEVARGMAG 381

Query: 661 KMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
           +  E  + + +     + S VA  DR RL QI + ++ NA+ F+ KGS      ++K   
Sbjct: 382 RAEEKGLEL-LCPAHFMSSCVAKVDRLRLRQILNNLIGNALKFTEKGSITVDMTVIKKTM 440

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                 FS+ + G  I E     +F RF  +  +    + G GLGL+I    + L GG +
Sbjct: 441 PEATLRFSISDTGVGISEHDQALLFERFKQLDGSSTRPQAGSGLGLAICRQLVELMGGRI 500

Query: 773 SISSS 777
            +SS+
Sbjct: 501 GVSST 505


>gi|319902902|ref|YP_004162630.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319417933|gb|ADV45044.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 735

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 130/236 (55%), Gaps = 4/236 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSK 605
           +S  A +      E    A+  K+ F+Q++S+E+R+PL  I+GF+D++ + + LG    +
Sbjct: 486 ESEAARKEAEHAREVAEYANRQKSIFLQNMSHEIRTPLNAIVGFSDVVNSEEDLGLTVEE 545

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           ++ Y+  I  ++ +L  LVND+LDL+ +++G   L  +   ++DL +   +SIA+++ + 
Sbjct: 546 RADYLSLIHTNTELLTTLVNDVLDLSKLESGSYALALAPTCISDLCHATLRSIASRVPDG 605

Query: 666 -NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +++    D    SF+ D  RL Q+ +  L+NA  ++ +GS  +    +++G  +FSV 
Sbjct: 606 VQLKLDEPEDASFISFLTDAVRLQQVITNFLTNACKYTDRGSITLKYRIQEDGGIVFSVT 665

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I ED  + VF RF        ++G GLGLSI      L GG V + ++  G
Sbjct: 666 DTGCGISEDKAEIVFGRF--EKLDTFKQGTGLGLSICRHIAELVGGRVYLDTTYTG 719


>gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1078

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 127/256 (49%), Gaps = 13/256 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  + E AL E  E    A+ +K  F+ ++S+E+R+PL  I+G   LL+ +   SL
Sbjct: 677 IDITELKKTEAALLEAKETAETANRVKTEFLANMSHEIRTPLNGILGMMQLLRQT---SL 733

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q +YVE    S+  L  L+ DILD++ ++AG M L  +     +L++ V +  A   
Sbjct: 734 EPEQEKYVELSITSAARLTRLLADILDISRIEAGKMSLFNAPFSAAELVDSVVELFAVPA 793

Query: 663 HENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            E  +R++  I  G     V D  R+ QI   ++ NA+ ++ +G   +   ARD  D   
Sbjct: 794 REKGLRLRCAIHPGLPPLLVGDEARVRQILFNLVGNALKYTEQGDITLELFARD-ADLCR 852

Query: 722 S------VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           S      V + G  IP  M   VF  F  V  +H     G GLGL+IV+  + L  G +S
Sbjct: 853 SECMCIRVVDTGVGIPAHMLSGVFEPFRQVEGSHTRSYEGAGLGLAIVQRLVELMQGEIS 912

Query: 774 ISSSDEGVTTINCRIP 789
           + S     T +   +P
Sbjct: 913 VQSEPGAGTAVLVSLP 928


>gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum
           gilvum SL003B-26A1]
 gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum
           gilvum SL003B-26A1]
          Length = 787

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 174/385 (45%), Gaps = 35/385 (9%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-------IRNIAATCSRY 490
           + I+ +SE   ++  D  + + N  ++SL    E  + PG          RN   T S  
Sbjct: 390 DAIETISEAFVLWNADNELVICNSNYQSLHNLPEQAVRPGAPYAEVMAAARNSHITTSPL 449

Query: 491 YNESDGWDLFAAIITSFDD-------ERKSLQG----------TLE------LLSDSVLE 527
           +  + G    A+     DD       ER++  G          TL+      L S+  L 
Sbjct: 450 HGGTPGAGANASYEAQLDDGRWLQISERRTKDGGFVSVGTDITTLKRHEERLLDSERRLM 509

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            ++  L  ++  L          AE+   EK  A   A+  K+ F+ ++S+ELR+PL  I
Sbjct: 510 ATVSDLRKSRQTLEMQAQQLVELAEKYAQEKTNA-ENANRAKSEFLANISHELRTPLNAI 568

Query: 588 IGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IGF+D++     G + S++ ++Y   I  S T LLN++NDILD++ ++AG M++    + 
Sbjct: 569 IGFSDIMDRGMFGPIGSERYAEYCRDIHESGTYLLNVINDILDMSKIEAGRMEMTVKPLG 628

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  ++ E  + I     E  I +    +  L +  ADR+ L Q+   +LSN + F+ +  
Sbjct: 629 VEAVVEEAGRIIRAPAQEKAIEVTCEVEPGL-AVAADRRALKQVLLNLLSNGVKFTPEKG 687

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
           TV L   R  G   F + + G  I +     +   FV   N      +G GLGL+I  S 
Sbjct: 688 TVRLSVHRAGGLARFEIADTGIGIRKADVDRLAQPFVQVENQFTKTHKGSGLGLAIARSL 747

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           + L GG ++I+S     T +   +P
Sbjct: 748 VELQGGTLTIASVPGQGTRVAFTLP 772


>gi|312880886|ref|ZP_07740686.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310784177|gb|EFQ24575.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 868

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 138/256 (53%), Gaps = 11/256 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +VT+  R E  L E  +A  +AD+ K++F+  VS+E+R+PL+ ++G ++L     LG+
Sbjct: 339 LFDVTERARGEAILREARKAAEEADQAKSAFLAQVSHEIRNPLSTLLGLSELC----LGT 394

Query: 602 -LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q  +++ I  +ST +L + ND+LDL+ V+AG ++L      L  LL +  +++  
Sbjct: 395 PLQPRQRHWIQSIHQASTHMLRIANDVLDLSRVEAGKLELQQVPYSLPQLLRDALKAVLP 454

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGD 718
           +     + + +  +  L    + D  R+ QI   +L+NA+ F  +G  V L+A +D  G 
Sbjct: 455 QGEAKGLALALREEPGLPERLLGDPGRIQQILVNLLTNAVKFCDRGR-VELRARKDPQGP 513

Query: 719 FI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++  +V++ G  I PED+ + VF  F   +     +G+GLGL I        GG++  SS
Sbjct: 514 WLELAVEDTGQGIEPEDL-RRVFQPFWQASPSTSAQGMGLGLPIALQLTRSMGGNIEASS 572

Query: 777 SDEGVTTINCRIPSKE 792
                TT   R+P +E
Sbjct: 573 LPGSGTTFLVRLPLEE 588


>gi|224823753|ref|ZP_03696862.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
 gi|224604208|gb|EEG10382.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
          Length = 1141

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 17/255 (6%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT+ + +++++   +E  L E+ E + +A+  K  F+  +S+ELR+PL +I+   D L  
Sbjct: 465 QTVCSIIDISERKLSELRLREQAEQISRANRYKTEFLATMSHELRTPLNSILILADQLAE 524

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++ G+L +KQ ++   I+ S   LL L+NDILDL+ ++AG M LN   +++NDL+  ++Q
Sbjct: 525 NRQGNLTAKQVEHATIINRSGKDLLALINDILDLSKIEAGRMTLNREKVLVNDLITTLRQ 584

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +         +  +   +   G   + D  RL QI   +LSNA  F+  GS V L+  + 
Sbjct: 585 NFLPVAENRQLTFQTTKEDSAGDVLITDATRLFQILKNLLSNAFKFTDHGS-VHLRVYQP 643

Query: 716 NG-----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIV 761
                            +V + G  +P D    +F  F     +G +R   G GLGLSI 
Sbjct: 644 QSVPPGMDSLPQHTLAMAVTDTGCGMPSDKLDRIFEAF-EQLEQGSKRQFGGSGLGLSIS 702

Query: 762 ESFINLHGGHVSISS 776
               +L GG + + S
Sbjct: 703 RQLAHLLGGTIDVRS 717


>gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
 gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
          Length = 756

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 142/272 (52%), Gaps = 7/272 (2%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S+  L+ ++  L  ++ +L       S  AE+   EK  A   A++ K+ F+ ++S+ELR
Sbjct: 475 SEKRLKATVTDLQRSRKILEVQTRQLSEMAEKYQEEKTRA-EAANQAKSEFLANISHELR 533

Query: 582 SPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL  IIGF+D++     G L + + + Y + I +S T LLN++NDILD++ ++AG M +
Sbjct: 534 TPLNAIIGFSDIMTQEMFGPLGTDRYADYCKDIYSSGTYLLNVINDILDMSKIEAGRMSI 593

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               +  ++   +  + I     E NI I       L   V D++ L Q+   +L+NA+ 
Sbjct: 594 ETEVVNASEAAEDAARIITGAASEKNIVISADVADNLHVDV-DKRALKQVLLNLLANAVK 652

Query: 701 FSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLG 757
           F+    TV LK AR  GD + F V + G  I E   + +   FV   N      +G GLG
Sbjct: 653 FTPDHGTVTLK-ARPRGDKVRFEVTDTGIGISERDIERLAKPFVQVENQFTKTHQGSGLG 711

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I  S + LHGG ++I S  +  T ++  +P
Sbjct: 712 LAIARSLVELHGGKLAIESEVKKGTVVSFSLP 743


>gi|13937003|gb|AAK50005.1|AF361475_1 double histidine kinase DhkD [Dictyostelium discoideum]
          Length = 1546

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 148/283 (52%), Gaps = 21/283 (7%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573
           +++S++PL N +  ++ +     N+T+    E  +  KN  LR       + DE+K  F 
Sbjct: 157 IDFSLMPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFF 216

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+PL  I+G TD L   +   +N ++   +E ++ ++  LL +VN++LD++ +
Sbjct: 217 ANVSHELRTPLALIVGPTDKLLKDENVDINVRKD--LEIVARNARGLLKIVNNLLDISRL 274

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG M LNYS + L   ++ +         E ++   +I+  +      D  ++ ++ + 
Sbjct: 275 EAGKMNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITN 334

Query: 694 ILSNAMDFSSKGSTV--ILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           ++SNA  F+  G  V  IL+    + +   F   V + G  IP+++ + +F RF  V  +
Sbjct: 335 LISNAFKFTPSGGAVKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGS 394

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  G GLGLSIV+ F+ LHGG V+I +   G      R+P
Sbjct: 395 STRKHGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLP 437



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 113/270 (41%), Gaps = 45/270 (16%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY----- 609
           L ++   L   ++ K+ F  ++S+ELR+PL  I+G+  LL        +S          
Sbjct: 727 LEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDIDSGGSSGGGSGSISGD 786

Query: 610 -------VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  +E I   ++    L+ND+LD++ +      L    + L  L+     SI    
Sbjct: 787 DSTVRTGLETIERCASSQNQLINDLLDMSLIIGDKFSLILGDVDLPILIENAISSILVTA 846

Query: 663 HENNIRIKVISDGK-------LGSFVADRQRLLQIFSKILSNAMDFS-SKG--------- 705
               I +     G+       L + V D+ RL Q+   +LSN++ F+  KG         
Sbjct: 847 QSKKISVHSNIQGEGEEESSILRNIVGDKARLQQVIWNLLSNSIKFTKEKGRIHLNLKVV 906

Query: 706 ------------STVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
                       S  +      +GD   +F++ +NG  IP+    SVF+RF        R
Sbjct: 907 NQIPSREVLGFCSNPMFNTINRHGDRWILFTITDNGKGIPKQFLPSVFDRFKQADCSSTR 966

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDE 779
              G+G+GLSI ++ I+LH G V  +S  E
Sbjct: 967 SYGGLGIGLSITQNIIHLHKGAVYANSEGE 996


>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1274

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 13/248 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L  V+VT+   A+R   E  EA  +A++ K+ F+ ++S+E+R+P+  I+GF ++L  + 
Sbjct: 514 LLMVVDVTEVAAAKRQAEEAREAAERANQAKSEFLANMSHEIRTPMNGILGFAEILLQT- 572

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +LNS+Q + V  I      LL+L+NDILDL+ +++G M L  +T  L  L+ E    I
Sbjct: 573 --NLNSQQEESVRIIQQCGENLLDLINDILDLSKIESGKMVLEQTTFSLRKLIYEAVNVI 630

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
             K+ E  + IK+     L   F  D  R+ Q+ + +LSNA  F+ +G   V +   +D+
Sbjct: 631 EPKLIEKGVEIKISIQKDLPDYFKGDPTRIRQVLNNLLSNAAKFTHEGHVEVKVNGQKDH 690

Query: 717 G------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
                    +FSV + G  IP +    +F  F        R+  G GLGL+I  S INL 
Sbjct: 691 SVETDSFTLVFSVSDTGIGIPREKLDLIFESFTQADGSTTRKYGGTGLGLTISRSLINLM 750

Query: 769 GGHVSISS 776
           GG +++ S
Sbjct: 751 GGQITVES 758


>gi|253569669|ref|ZP_04847078.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840050|gb|EES68132.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 635

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 149/289 (51%), Gaps = 14/289 (4%)

Query: 508 DDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           D   K ++  LE+  S    +  I P      +    ++ D +R    L E       AD
Sbjct: 220 DGNLKEIEYPLEVEGSKHYFQARIAPFEGNTVLALIHDIGDRIRRSEELIEAKRRAEDAD 279

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K+ F+ ++S+E+R+PL  I+GF++++    L     ++ +Y+E I  +S +LL L+ND
Sbjct: 280 RMKSVFLANMSHEIRTPLNAIVGFSEIMV---LTENEEEKHEYLEIIQKNSNLLLQLIND 336

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF--VADR 684
           ILDL+ +++G  ++++  + +  L++EV++    KM + N+ +KV+     G F    DR
Sbjct: 337 ILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLKM-KLNVDLKVVRPQ--GEFWTSTDR 393

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            R++Q+    LSNA+  +  GS  +    +  GD++   V + G  IPE+    +F RF 
Sbjct: 394 NRVMQVLFNFLSNAIKNTETGSITL--GLKQEGDWLKLFVSDTGCGIPEEKLPQIFTRFE 451

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 Q  G GLGLSI +S +   GG + +SS     +T    +P +E
Sbjct: 452 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVSSELGQGSTFALYLPYQE 498


>gi|66812156|ref|XP_640257.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74855086|sp|Q54SP4|DHKD_DICDI RecName: Full=Hybrid signal transduction histidine kinase D
 gi|60468257|gb|EAL66266.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1546

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 148/283 (52%), Gaps = 21/283 (7%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573
           +++S++PL N +  ++ +     N+T+    E  +  KN  LR       + DE+K  F 
Sbjct: 157 IDFSLMPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFF 216

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+PL  I+G TD L   +   +N ++   +E ++ ++  LL +VN++LD++ +
Sbjct: 217 ANVSHELRTPLALIVGPTDKLLKDENVDINVRKD--LEIVARNARGLLKIVNNLLDISRL 274

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG M LNYS + L   ++ +         E ++   +I+  +      D  ++ ++ + 
Sbjct: 275 EAGKMNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITN 334

Query: 694 ILSNAMDFSSKGSTV--ILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           ++SNA  F+  G  V  IL+    + +   F   V + G  IP+++ + +F RF  V  +
Sbjct: 335 LISNAFKFTPSGGAVKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGS 394

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  G GLGLSIV+ F+ LHGG V+I +   G      R+P
Sbjct: 395 STRKHGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLP 437



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 113/270 (41%), Gaps = 45/270 (16%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY----- 609
           L ++   L   ++ K+ F  ++S+ELR+PL  I+G+  LL        +S          
Sbjct: 727 LEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDIDSGGSSGGGSGSISGD 786

Query: 610 -------VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  +E I   ++    L+ND+LD++ +      L    + L  L+     SI    
Sbjct: 787 DSTVRTGLETIERCASSQNQLINDLLDMSLIIGDKFSLILGDVDLPILIENAISSILVTA 846

Query: 663 HENNIRIKVISDGK-------LGSFVADRQRLLQIFSKILSNAMDFS-SKG--------- 705
               I +     G+       L + V D+ RL Q+   +LSN++ F+  KG         
Sbjct: 847 QSKKISVHSNIQGEGEEESSILRNIVGDKARLQQVIWNLLSNSIKFTKEKGRIHLNLKVV 906

Query: 706 ------------STVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
                       S  +      +GD   +F++ +NG  IP+    SVF+RF        R
Sbjct: 907 NQIPSREVLGFCSNPMFNTINRHGDRWILFTITDNGKGIPKQFLPSVFDRFKQADCSSTR 966

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDE 779
              G+G+GLSI ++ I+LH G V  +S  E
Sbjct: 967 SYGGLGIGLSITQNIIHLHKGAVYANSEGE 996


>gi|319902368|ref|YP_004162096.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319417399|gb|ADV44510.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 294

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 132/241 (54%), Gaps = 5/241 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQ 608
           R  + L + NE   + +++KN+F+ ++++E+R+PL  I+GFT +L  +++ +L+ + +  
Sbjct: 47  RRVKTLRQMNEVAEETNQLKNAFIANMTHEIRTPLNAIVGFTTML--AEMDNLDKATRMA 104

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ I+ +   LL LVND+LD + ++A  ++ N   + +N L+ EV  +  T  H   I+
Sbjct: 105 FLKEINENKDSLLQLVNDLLDYSKIEANTLEYNDEEVDVNTLIAEVCMAENTGSHPGGIQ 164

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++ +        V DR R  Q+   ++ NA+ F+ KGS  I      N +F F V + G 
Sbjct: 165 VEFVEKLPQCRLVVDRVRFAQVVGNLVRNALKFTEKGSVKIGCRQLSNRNFYFYVADTGC 224

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I E+   ++F RFV   +    +G GLGLSI +S +  +GG + + S     +T    +
Sbjct: 225 GIDEEGRHAIFERFVKMNY--NIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTL 282

Query: 789 P 789
           P
Sbjct: 283 P 283


>gi|209526093|ref|ZP_03274625.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493481|gb|EDZ93804.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 1064

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 12/259 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R  + LT KN  L + + +K+ F+  +S+EL++PLT ++G + LLK   LG L+
Sbjct: 327 DITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDKALGELS 386

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q++Y + I  S   L+ +VNDILDL  ++ G ++L    + +  + +   +++     
Sbjct: 387 DRQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALEAVLHLHQ 446

Query: 664 ENNIRIKVISDGK----------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + +I+    S G           L +  AD  RL Q+   ++SNA  F+  G  + L+  
Sbjct: 447 QGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGGYMGLRVN 506

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           R     +F+V + G  IPE     +F +F  + +    Q  G GLGL + +    LHGG 
Sbjct: 507 RWEDWIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQRLARLHGGD 566

Query: 772 VSISSSDEGVTTINCRIPS 790
           +S  S     T     +P 
Sbjct: 567 ISFISHQGKGTEFTLLLPP 585


>gi|219850111|ref|YP_002464544.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219544370|gb|ACL26108.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 880

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 135/250 (54%), Gaps = 30/250 (12%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD +KN F+  +S+ELR+P+T I GFT LL    LG LN  Q ++V  I  ++  ++NL
Sbjct: 631 EADRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQLNDTQREFVNTIYNNTERMINL 690

Query: 624 VNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +ND+L++  +++G ++L + ++     L+ ++ E++  I+ + H+  I I       L  
Sbjct: 691 INDVLEITKIESGSIELEWRSLHLAEALSGVIAELQSHISQRQHQLTISIP----PGLPL 746

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDF---------------IFS 722
             AD  RL QI   +L NA+ ++  G  + + AAR+  N DF               + S
Sbjct: 747 IRADAMRLHQILYHVLLNAVKYTPAGGKITI-AAREILNVDFPEPVRSILHTNHRYLLLS 805

Query: 723 VKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           + + G  I PED+ + +F+RF    N  + +  G GLGLSIV+  + L GGH+ + S+  
Sbjct: 806 ISDTGVGIRPEDLPR-IFDRFFRAENPLKVEAGGTGLGLSIVKPLVQLLGGHIWVESTVG 864

Query: 780 GVTTINCRIP 789
             +T    +P
Sbjct: 865 QGSTFYIALP 874


>gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 713

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 129/251 (51%), Gaps = 2/251 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E AL +       AD  K+ F+  +S+ELR+PL +IIGF+ +L       L 
Sbjct: 459 DITERKENENALIQAKMKAEVADRTKSEFMTTMSHELRTPLNSIIGFSQMLLEVPGSELT 518

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +   +YV  I  S   LL+L+NDILD++ V+AG  ++      ++  L +V+  I     
Sbjct: 519 NAHHKYVSNILKSGKSLLHLINDILDISKVEAGKKEVEAEFFDIHKALYDVEMLIRPLAS 578

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + NI I V  +       AD     Q+   IL+NA  F+++   V + A     +   SV
Sbjct: 579 KKNIDIIVDYENANNLLYADVIMFKQVMYNILNNATKFTAEKGKVFVTAKSGEKETSISV 638

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+NG  I ED  + VF  F  + +A   +  G GLGL++V S++ +HGG+V + S +   
Sbjct: 639 KDNGIGIAEDKKEMVFEPFKQIDSAKNRRYEGTGLGLALVRSYVEMHGGNVWVESEEGKG 698

Query: 782 TTINCRIPSKE 792
           +T    IP ++
Sbjct: 699 STFIFTIPQQD 709


>gi|13470769|ref|NP_102338.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099]
 gi|14021512|dbj|BAB48124.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099]
          Length = 506

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 154/298 (51%), Gaps = 13/298 (4%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAE--RAL 555
           L+A + T      +++   L +LS     Y    L  A  ML +F +  D++ AE   A 
Sbjct: 185 LYAYVGTRLWMPVEAMMAGLLVLSLPFFVYVARQLNRASLMLLSFRSEKDALIAELETAK 244

Query: 556 TEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVE 611
           +  +EA R+A++    K+ F+  +S+ELR+PL  I+GF++++    LG + N     Y  
Sbjct: 245 SMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSNPTYRDYAH 304

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S   LL+L+N+ILDL+ ++AG  +LN   ++L +++ +    +  K    +IR+  
Sbjct: 305 DVHDSGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKARNKDIRVVQ 364

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
             +  L    AD + + QI   +LSNA+ F++ G  + ++       G +I SVK+NG  
Sbjct: 365 DFEQTLPRLFADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYI-SVKDNGPG 423

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           IPED    V + F   S A +   +G GLGL IV+  + +HGG   + S   EG   I
Sbjct: 424 IPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLREGTEAI 481


>gi|163744984|ref|ZP_02152344.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161381802|gb|EDQ06211.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 547

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 2/228 (0%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K+ F+  VS+ELRSPLT+I G   LL +   G L SK    +E    ++  L+ ++N
Sbjct: 303 ERMKSEFISMVSHELRSPLTSIKGSMGLLLSRAAGELPSKARALLEISHRNADRLVLIIN 362

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL  +  G ++ N     + +LL E   + ++    + +RI+V +         D  
Sbjct: 363 DILDLEKISTGQLEFNLEETDIAELLRETSAANSSLEQRHGVRIQVENTDTPMQVTTDPN 422

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           R++Q+ +  LSNA  FS  G  + ++A  ++ +   SV + G  IP      VF RF  +
Sbjct: 423 RVIQVLTNFLSNAAKFSKPGERITIRAEENDHELRISVSDRGQGIPASEEHKVFQRFADL 482

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SN+ R ++ G GLGLS+ ++ +   GG +   S +   TT    +P K
Sbjct: 483 SNSKRAEKGGTGLGLSVCKAIVENLGGKIGFDSREGFGTTFYFTLPKK 530


>gi|170741220|ref|YP_001769875.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195494|gb|ACA17441.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1596

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 10/247 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +V++  R   AL    +A  +A   K  F+  +S+E+R+PL  I+G+TDLL      SL 
Sbjct: 1080 DVSERQRQAEALELARDAAEQASRAKTDFLASMSHEIRTPLNGILGYTDLLLDDP--SLG 1137

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q +  E I ++   LL +VNDILD + ++AG ++L+    +L+ LL+     +     
Sbjct: 1138 GGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDALLDNTVSVVRGFAR 1197

Query: 664  ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
            +  I + V  DG    + V D+ RL QI   +L+NA+ F+  GS  +  A          
Sbjct: 1198 KKAIAVAVRLDGAAPRTLVGDQDRLRQILLNLLNNAVKFTHAGSVTLAVACESPPGATAC 1257

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              F+V + G  IP D  + +F RF  V N+ R    G GLGL+I ++ + L GG + + S
Sbjct: 1258 LRFAVSDTGIGIPRDKHERLFQRFSQVDNSIRRDFGGTGLGLAISKNLVELMGGTIGVES 1317

Query: 777  -SDEGVT 782
               EG T
Sbjct: 1318 VVSEGTT 1324


>gi|323488189|ref|ZP_08093440.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
 gi|323398193|gb|EGA90988.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
          Length = 953

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 132/247 (53%), Gaps = 13/247 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T ++   R +T ++E     D++K+  V  VS+ELR+PL++++GFT+LL   +L     K
Sbjct: 562 TGTIFVHRDITREHEV----DKMKSELVSTVSHELRTPLSSVLGFTELLLNKQLKP--EK 615

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-MHE 664
           Q +Y++ I   +  L NL+ND LDL  +++G        + +N+L+ E  +   T+ MH 
Sbjct: 616 QERYLKTIYKEAKRLTNLINDFLDLQRMESGDQVYRMDKLAVNELIIETVEKFRTQNMHS 675

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
               I  I D        DR+R+ Q+   ++ NA+ FS +G +V +    D  +   ++K
Sbjct: 676 ----IVFIDDASDVIVEGDRERIAQVLMNLVGNAIKFSPQGGSVTISMKNDLNNLSVTIK 731

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +    +F++F  + N+ R +  G GLGL+I +  I  H G + I S +E  T
Sbjct: 732 DEGIGIPTEDIPKLFSKFQRIDNSSRRKIGGTGLGLAICQEIILQHEGKIWIESKEEQGT 791

Query: 783 TINCRIP 789
            ++  +P
Sbjct: 792 AVHFELP 798


>gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 928

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 131/249 (52%), Gaps = 6/249 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ D ++ E  L +  E  + A  +K+ F+ ++S+E+R+PL  ++G  DLL  +    L+
Sbjct: 274 DIADRMQIEDELVQAREDAQAASRVKSQFLANMSHEIRTPLNGVLGMADLLLDT---GLS 330

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q + ++ + +S+  L  L+ D+LD++ ++AG +++   +  L +L+ E  ++IA +  
Sbjct: 331 PEQRELLDALQSSANALRGLIEDVLDISKIEAGKLEIEAVSFPLLELVYEAARAIAVRAQ 390

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           E  + + V ++  L + V  D  R  QI   +LSNA+ F+  G  V+    R +     S
Sbjct: 391 EQGLELIVDAEPALPARVLGDPVRFRQIVLNLLSNAVKFTPAGEVVVRVRQRADEHIELS 450

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  +PE+  +++F  F  +     RR  G GLGL+I        GG +     D+G
Sbjct: 451 VRDTGVGVPEERREAIFESFTQSDGSTTRRFGGTGLGLTICRELAERMGGKLWYEPGDQG 510

Query: 781 VTTINCRIP 789
            +  +  +P
Sbjct: 511 GSVFSVSLP 519


>gi|251797083|ref|YP_003011814.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544709|gb|ACT01728.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 642

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 11/261 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +++  ++ + D    ++ L EK  A+R  +E+K+ F+  +S+E+R+P+  +IG TDLL
Sbjct: 232 NNRSIGFYLLIKDITEQKKLLIEKETAVR-TNEVKSEFMAMMSHEIRTPMNGVIGMTDLL 290

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L+ +Q +YV  I  S   LL ++NDILD + V++G  +L      LN  + E 
Sbjct: 291 LDT---PLDEEQKEYVTIIRKSGETLLGIINDILDFSKVESGNAELTEEPFNLNTAIAET 347

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
             ++  K  E N+  KV IS G   + + D  ++ QI   ++ NA+ F+ +GS  V +  
Sbjct: 348 FDTLMPKAMEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAIKFTPRGSIGVSIDK 407

Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           A   G  +   F+VK+ G  +PED    +F  F    H   R+  G GLGL+I    + L
Sbjct: 408 AEAEGANVRLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGGTGLGLAITRKLVQL 467

Query: 768 HGGHVSISSSDEGVTTINCRI 788
             G +    +  G T     I
Sbjct: 468 MDGQIYCEPNPGGGTIFRFHI 488


>gi|197122594|ref|YP_002134545.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196172443|gb|ACG73416.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 729

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 3/219 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL  AD  K++F+ +VS+ELR+PL  ++G+ DLL   KLG L ++Q   ++ +++S   L
Sbjct: 484 ALEAADRRKDNFLANVSHELRTPLVTVLGYADLLLAEKLGPLAARQRTALQVVASSGRRL 543

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              + ++L+L+  +       ++   L D++ +   ++A +  E  +R++        + 
Sbjct: 544 RAFIEELLELSRHELARPAEPFAPFPLADVITQAVVALAPRFAERGLRVRARVARGTPAA 603

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +  R+R+LQ+   +L NA  ++ +GS + L AA        SV + G  IPE+    +F 
Sbjct: 604 LGQRERVLQVLVNLLGNAERYAPEGSAIHLAAAAVGDRVAVSVTDRGPGIPEEHQALIFE 663

Query: 741 RFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R      +A R +   +G+GL+I +  +  HGG + + S
Sbjct: 664 RLYQVRDDAPRREGGALGIGLAIAKGIVEAHGGEIGVRS 702


>gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1261

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 127/254 (50%), Gaps = 18/254 (7%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E  L +  EA   A+  K++F+ ++S+ELR+PL  I+GF+ LL  S   S + K S  +E
Sbjct: 751  EITLRQAKEAAEAANRSKSTFLANMSHELRTPLNAILGFSQLLSRSIYLSGDEKDS--LE 808

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I +S   LL L+N +LDL+ ++AG MK+      L  LL  +++    K ++ N+ +K 
Sbjct: 809  VIHSSGQHLLTLINQVLDLSKIEAGRMKMQLRKFDLFHLLQSLERMFTQKANDKNLELKF 868

Query: 672  ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------DNGD 718
                 +   +  D  +L QI   +LSNA+ F+ +G  ++    R              G 
Sbjct: 869  DCHPDIPQLIYTDETKLRQILINLLSNAIKFTPRGEIILRVYPRWSNLEAISSSRLPAGT 928

Query: 719  FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
            +   F VK+ G  I  D CK +F  FV      Q + G GLGL I + FI+L GG +S+ 
Sbjct: 929  YALSFEVKDTGVGIAPDECKYLFQAFVQTLSGQQAQEGTGLGLKISQQFIHLIGGEISVE 988

Query: 776  SSDEGVTTINCRIP 789
            S     TT    IP
Sbjct: 989  SDLGRGTTFQFMIP 1002


>gi|254411336|ref|ZP_05025113.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181837|gb|EDX76824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 789

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 14/242 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK------QSQYVEYI 613
           +A + A+  K+ F+  +S+ELR+PLT +IG +  L    LG   SK      Q +Y++ I
Sbjct: 408 QATQAANHAKSEFLAAMSHELRTPLTCVIGLSATLLRWSLGEGGSKTVSIEKQRRYLQTI 467

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL L+NDILD + ++AG   LN +   L  L  +  +S+  K      ++++I 
Sbjct: 468 QENGEHLLALINDILDFSQLEAGKAVLNINEFSLRYLAQQTLRSLKEKASSG--QVELIL 525

Query: 674 DGKLGS----FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           D ++ +    F AD +RL QI   +L NA+ F+  G  V L+  R+    +F +++ G  
Sbjct: 526 DWQVPTPKDRFQADPRRLRQILFNLLGNAIKFTPAGGQVTLRGWREQNRAVFQIEDTGIG 585

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    +F +F       QR   G GLGL++ +  + LHGG + + S+    +    R
Sbjct: 586 IPQEQIPLMFQKFQQLEKTYQRTYEGTGLGLALTQQLVELHGGTIDVESTVGKGSIFTVR 645

Query: 788 IP 789
           +P
Sbjct: 646 VP 647


>gi|312116341|ref|YP_004013937.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221470|gb|ADP72838.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 663

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 179/360 (49%), Gaps = 31/360 (8%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-AATCSRYYNESDGW 497
            ++ +S+G A++  + R+ ++N AF  L +  E+ L PG    ++  +T +R   +    
Sbjct: 149 AVEAISDGFAIYDENDRLLIANEAFTKLHEGIEDALGPGASFEDLLRSTLARGLID---- 204

Query: 498 DLFAAIITSFDDER---KSLQGTLELLSDSVLEYS--------IIPLPNAQTMLTFVNVT 546
                 I   D +R   + L  +    S+  + ++           + N +T+  + +++
Sbjct: 205 ------IGCEDPDRWLDRQLTASKHAFSEIHMRFANGCWMSRRHKRMENNETVRIWTDIS 258

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              R +  L +       AD  K+ F+ ++S+E+R+P+  IIGF +LL     G+L+  Q
Sbjct: 259 SLKRQQAELEDARARAEAADRAKSHFLTNMSHEMRTPMNGIIGFNELLLQ---GNLSDTQ 315

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y   I +SS  L++L+++ILDL  ++ G +++  +   LN L++  + S+     E  
Sbjct: 316 RDYATLIQSSSKSLMSLIDEILDLGKIERGTLEIQSAPFKLNQLISAAR-SLQALADEKA 374

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +++KV S     +  + D +R+ QI   +L NA+ F+  G   +  +A +NG   FSV +
Sbjct: 375 LQLKVSSTLPSQTIAIGDVERIRQILVNLLGNAIKFTETGEVTLSISAENNG-LAFSVND 433

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            G  I  D  + +FNRF    +   G+ +G GLGL+I +    L GG +++ S   EG T
Sbjct: 434 TGPGIAPDRLRKIFNRFYQADDLCSGKVKGSGLGLAIAKELTELMGGTITVESERGEGST 493


>gi|282900038|ref|ZP_06307997.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195070|gb|EFA70008.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 663

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 133/269 (49%), Gaps = 23/269 (8%)

Query: 545 VTDSVR-AERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLT 585
           + DS+R A R LT++ + L +                  A  I+N F+  +S+EL +PLT
Sbjct: 390 LMDSLREATRKLTQEKQTLEQRVIERTMALREALLAAEAASRIRNEFLATISHELLTPLT 449

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG +  L    LG L  +Q +Y++ I  S   LL+++NDILDL+ + AG   LN    
Sbjct: 450 YVIGMSSTLLRWPLGELTPRQREYLQTIHDSGERLLDMINDILDLSQIQAGKTVLNICEF 509

Query: 646 VLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            L  L   +  S+  K     + +K  V  + +   F AD  R+ QI   +L+NA+ F+ 
Sbjct: 510 SLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQIIWNLLTNAIKFTP 569

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           +G  V L+   ++   IF V++ G  IPE+    VF +F  V  ++     G G+GL++ 
Sbjct: 570 QGGNVTLRFWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHRPYEGTGIGLALT 629

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + LH G + + S+    +     IPS
Sbjct: 630 KQIVELHRGRIEVESTVGVGSIFTVWIPS 658


>gi|209525380|ref|ZP_03273921.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494231|gb|EDZ94545.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 625

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 130/257 (50%), Gaps = 23/257 (8%)

Query: 552 ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKL 599
           ER + E+ +AL  A       +  K+ F+  +S+ELR+PLT++IG +  L     +    
Sbjct: 223 ERRVKERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPDNF 282

Query: 600 GSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            +L   KQ  Y++ I  S   LL L+NDILDL+ V++G   L +S   L  L  +   ++
Sbjct: 283 PALPLEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKFSEFSLQKLAQQCLHTL 342

Query: 659 ATKMHEN----NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                E     N++IKV  D     F AD +R+ QI   +LSNA+ F+ KG  V L  +R
Sbjct: 343 RDFAKEKGVNVNLQIKVDQD----LFRADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSR 398

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +   IF VK+ G  I ++    +F +F  + + +R Q  G GLGL++ +  + LHGG +
Sbjct: 399 KDKTAIFQVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVELHGGSI 458

Query: 773 SISSSDEGVTTINCRIP 789
              S     T     IP
Sbjct: 459 QFESEVGLGTKFTVYIP 475


>gi|260892545|ref|YP_003238642.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260864686|gb|ACX51792.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 467

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 4/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L      L   D  +  F+ +VS+ELR+PLT+I GF   +    +     KQ  Y+  
Sbjct: 225 RTLDAMAAQLEAIDRERQEFLAYVSHELRTPLTSIRGFVQGMLDGTIPP--EKQQSYLAR 282

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + + +  L  LV+D+L L  + +G    N+    L  +L  V++ ++    E  ++++  
Sbjct: 283 VFSETERLRRLVDDLLMLVRLRSGQFTFNWQGTDLRRVLTTVEEVMSPLALEKGVQLEFR 342

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           + G+L  + AD  RL+Q+F  ++ NA+ FS  G  V+++A + +G     V + G  IP 
Sbjct: 343 TQGELPVY-ADEGRLVQVFMNLVDNAIKFSPPGGRVLVEAEKTDGLLRVQVTDEGPGIPP 401

Query: 733 DMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F+ F S   R +   G GLGL+I    +  HGGH+S+ +  EG  T    +P+
Sbjct: 402 EELPRIFDSFYSGTARSRSELGTGLGLAISRLIVEKHGGHISVRNRPEGGCTFTVLLPA 460


>gi|254447054|ref|ZP_05060521.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
 gi|198263193|gb|EDY87471.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
          Length = 821

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N+ L +AD +++ FV ++S+ELR+PL ++IGF+ +L  ++  SL  K   +VE I 
Sbjct: 309 LEQANQELLEADRLRSEFVANMSHELRTPLNSVIGFSSVLMKNRNQSLLEKDLNFVEKIH 368

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL+L+NDILDL+ ++AG M++    +++ D++ +  + + T+    N+ ++V   
Sbjct: 369 RNGKHLLSLINDILDLSKIEAGRMEVELRPVLVQDVVRDTSEMLQTQAEAKNVALRVEGQ 428

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D  +L Q+   ++ NA+ F+ +GS V LK   ++      V + G  I ED 
Sbjct: 429 LDLPYIQTDGDKLRQVLINLVGNALKFTERGS-VTLKVGVESQWLRIDVIDTGIGIAEDK 487

Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +VF  F   A  G  R   G GLGL+I  S + +  G V + S     +T +  +P
Sbjct: 488 LMTVFEPF-RQADAGTTRQYGGTGLGLAITRSIVEMLDGRVELDSVQGQGSTFSVYLP 544


>gi|298682345|gb|ADI95406.1| TodS [Pseudomonas putida]
          Length = 978

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 145/284 (51%), Gaps = 25/284 (8%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572
            +++S++P+ N +  + ++     N+TD  +AE  L  KN       E +RK D  K+ F
Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITDKKKAEAMLALKNQELEQSVERIRKLDNAKSDF 184

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
              VS+ELR+PL+ I+G  + +  ++ G  +    Q+ E I  ++  LL  VN +LDLA 
Sbjct: 185 FAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689
           +DA  M L+Y    L+ L   +  +      + +I      D KL    VA  D ++  +
Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299

Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           I   +LSNA  F+  G  +   L  +R N   + +V ++G  IP  + K +F RF   + 
Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GQ+  RG GLGLSIV+ F+ LH G +S+S +  G      ++P
Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           I L  L+ +    +      N++ + V++D +L     D  ++ Q+   +  NA++  S+
Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884

Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
                 +     +  D GD  + SVK+ G  I E     +FN F +     ++ G+G+GL
Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I  +   +H G + +     G       IP+++
Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974


>gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
 gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
          Length = 1272

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 11/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE+ L E  E   +A   K+ F+ ++S+E+R+PL  IIGFTDLL +S     + K++ Y+
Sbjct: 774  AEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS---FPSGKEASYL 830

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I +S   LL L+NDILDL+ ++AG M L+YS + L   + E+     T++    +   
Sbjct: 831  DAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVEHKGLSFI 890

Query: 671  VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVK 724
            +     L   V  D  RL Q+   ++ NA+ F+ +G   +     L       D   SV+
Sbjct: 891  LDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGSLHTEESKVDLTISVE 950

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I  +  +++F  F  ++ +  R+  G GLGL+I +  + + GG +S+ S     T
Sbjct: 951  DTGIGIRPEEREAIFQSFHQSSGQDTRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGT 1010

Query: 783  TINCRIP 789
            T    IP
Sbjct: 1011 TFTVNIP 1017


>gi|163753494|ref|ZP_02160618.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
 gi|161327226|gb|EDP98551.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
          Length = 510

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 140/253 (55%), Gaps = 14/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +SV   + L  KN+ L++ ++ KN+F+ + S+ELR+PLT +  F  +L+ +   S+ ++Q
Sbjct: 116 ESVINSQILELKNKYLKEKEDFKNTFIANFSHELRNPLTGVTAFCSVLEKT---SMTTEQ 172

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YVE I +S+  L N++ DIL+++ ++ G + +       ++L+  ++ + + K  + N
Sbjct: 173 QDYVEVIKSSADHLKNMIGDILEMSKIEVGKLTIEEELFNFHELVEMLEFTYSVKAKQKN 232

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFI 720
           I  +V  D K+  ++ +D+ R+ QIF  ++ NA  F+S G   +      + AR   +  
Sbjct: 233 IEFEVDFDEKIPKYIESDKTRIKQIFENLIENAFKFTSTGKVTLSIHENQRRAR-KVNLN 291

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SVK+ G  IP +    +FN F    +  +  G GLGLSIV+  ++L  G +++ S ++ 
Sbjct: 292 ISVKDTGIGIPPEKLDIIFNSFTQLNNSQKYSGTGLGLSIVKGLVDLMDGKITVESEEKV 351

Query: 781 VTT----INCRIP 789
            +T    IN + P
Sbjct: 352 GSTFKMNINFKYP 364


>gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 1120

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 132/240 (55%), Gaps = 10/240 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T   + E+ L +  EA   A E K++F+ ++S+E+R+P+  IIGF+D++ T+    
Sbjct: 514 IMDITPRKQMEQDLQKAKEAAELATEAKSAFLANMSHEIRTPMNAIIGFSDVMLTT---D 570

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L + Q +YV  I+AS+  LL+L+NDILD A ++ G ++L      L ++++ V  +++ +
Sbjct: 571 LVAAQRKYVTTINASANSLLHLLNDILDSAKLEKGQLQLEMQDFSLAEVIDMVTSTLSIQ 630

Query: 662 MHENNIRIKVISDGKLGSF---VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +  + I++    +L  +    ADR R  Q+   I+ NA+ F+ KG   +      +G 
Sbjct: 631 TRKKRLDIELSLAPELAEYYYGAADRLR--QVLMNIVGNAVKFTEKGQVHLSIKPTQDGK 688

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +FSV++ G  I  D  + +F  F        RR  G GLG SI +  +NL GG +  SS
Sbjct: 689 VLFSVQDTGIGIASDRIQHIFEPFTQADASMSRRFGGTGLGTSISKQLVNLMGGEIWASS 748


>gi|291514812|emb|CBK64022.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 1049

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 140/249 (56%), Gaps = 15/249 (6%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   R E+ L    +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L  +       
Sbjct: 667 ITPRKRLEQDLRSARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILAET---DEEQ 723

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +Y+  I  ++ +LL L+ DILDL+ ++AG ++ N+S   LN+L++E +  I  K  E
Sbjct: 724 EKREYISIIENNNALLLQLIGDILDLSKIEAGTLEFNFSDFELNELMHEKENIIRMKTAE 783

Query: 665 NNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
               +++I +  L +  F +DR RL Q+   +L+NA  F++KGS  I    R  G  + F
Sbjct: 784 G---VELIFEPGLDACLFHSDRNRLSQLLINLLTNAAKFTAKGS--IRFGYRAEGSRLRF 838

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  IP +  + +F+RFV  N+    ++G GLGL I +S +   GG + + S +  
Sbjct: 839 YVSDTGCGIPPEGQRRIFDRFVKLNSF---KQGTGLGLPICKSIVEHLGGEIGVKSEEGR 895

Query: 781 VTTINCRIP 789
            TT    +P
Sbjct: 896 GTTFWFTLP 904


>gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 597

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 127/258 (49%), Gaps = 3/258 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  +    +VT + RAE  L E       A   K  F+ +VS+ELR+PL  IIGF+D+L
Sbjct: 297 GAGVICFLADVTAARRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGFSDML 356

Query: 595 KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            + +L   + SK+ +Y E I  S   LL +VN ILD++ +++G M++        +L ++
Sbjct: 357 ASEQLSPADPSKRREYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQELADQ 416

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + +  K  +  I +       L   V D++   QI   +LSNA+ F+     V ++  
Sbjct: 417 CVKMMQLKAEQARIALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVAVRLY 476

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            D      +V ++G  I       + + F   S A+     G GLGLS+V   + LHGG 
Sbjct: 477 PDGNRLAIAVSDSGIGIAAADLGRLGDPFFQASAAYDRAYEGTGLGLSVVRGLVGLHGGA 536

Query: 772 VSISSSDEGVTTINCRIP 789
           +++ S+ +  T +  R+P
Sbjct: 537 IAVESAPQRGTCVTVRLP 554


>gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1314

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 132/259 (50%), Gaps = 14/259 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKL 599
           TF ++T     E AL +       A   K+ F+ ++S+E+R+P+  I+G + L L+ +K 
Sbjct: 558 TFTDITARKDMEAALHDAKVEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQAK- 616

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               ++Q  ++E I+ S   L+ L+NDILDL+ ++A  M L      L++LL ++  ++ 
Sbjct: 617 ---EARQRDFLEKINHSGHFLMGLLNDILDLSKIEAERMDLESQPFRLDELLKQLAANVL 673

Query: 660 TKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---- 714
             M    + +   I+ G   + V D  RL Q+   +LSNAM F+ +G   I   A     
Sbjct: 674 PAMRNKAVEVHFFIASGTPLALVGDALRLGQVLHNLLSNAMKFTHEGEVRITLTAEPYVQ 733

Query: 715 --DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             D+  F F VK++G  IP ++   +F  F+       R+  G GLGL+I    + +  G
Sbjct: 734 LTDHYLFTFEVKDSGIGIPAEVQPKLFESFIQADSSTTRQYGGSGLGLAICRRLMEMMHG 793

Query: 771 HVSISSSDEGVTTINCRIP 789
            +++ SS    +T  CR+P
Sbjct: 794 KITLQSSLGQGSTFTCRLP 812


>gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 885

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 10/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ D  + E AL +  EA   A   K+ F+  +S+ELR+PL  I+GFT L++     + N
Sbjct: 385 DIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLMERELYHNPN 444

Query: 604 SK---QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  +++E I  S   LL L+ND+L+++ ++AG + LN +   L  LLN +++ +  
Sbjct: 445 IPLFDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLEL 504

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
                 + +    D ++ +++ AD Q+L Q    +L NA+ F+ KG  ++ +K  + N D
Sbjct: 505 PASSKKLTLDFAIDDQIPTYIYADEQKLRQCLINLLGNAIKFTVKGGVILRVKLGKFNHD 564

Query: 719 F---IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           F    F V++ G  I       +F  F  +   R  ++G GLGLSI + FI L GG + +
Sbjct: 565 FGQLWFEVEDTGPGIDPSEMDLLFEPFSQTETGRNSQQGTGLGLSITQKFIGLMGGEIQV 624

Query: 775 SSSDEGVTTI 784
            SS+ G  TI
Sbjct: 625 -SSERGKGTI 633


>gi|319782145|ref|YP_004141621.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168033|gb|ADV11571.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1260

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 134/263 (50%), Gaps = 5/263 (1%)

Query: 533  LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            LPN       V ++T   RAE  LT+      +A   K  F+  +S+E+R+PL  IIGF+
Sbjct: 992  LPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFS 1051

Query: 592  DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L+   K G + N +   Y+  I+ S   +L+LVND+LD++ ++AG  ++ Y  + LND 
Sbjct: 1052 ELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDT 1111

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            L E    +  + +   + I+     +L   VAD + + QI   ILSNA+ ++  G  VI+
Sbjct: 1112 LAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIV 1171

Query: 711  KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
              A + +GD +  V++ G  +     +     F  ++   RG+  G GLGL + ++ +  
Sbjct: 1172 STAYETSGDVVMRVRDTGIGMSHAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEA 1231

Query: 768  HGGHVSISSSDEGVTTINCRIPS 790
            +    +I+S+    T +    PS
Sbjct: 1232 NRARFTINSTPGEGTLVEVAFPS 1254


>gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 592

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 25/338 (7%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           + EG+ V    G I L NPAFR L   TEE    P   I    A  S Y           
Sbjct: 260 MGEGLMVTDAKGTITLVNPAFRDLLAITEEVEGRPLIDITRHPALHSAYKT--------- 310

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            II S  +  + +  TL+   +  +    +PL +   +   V V   +            
Sbjct: 311 -IIASKSERLEEI--TLDAKGEKTILTHWVPLLDGDRLQGVVAVFHDI----------SN 357

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++ ++I+  FV +VS+ELR+P+T I G+ + L +  L S   +  ++VE I + S  L 
Sbjct: 358 IKRLEKIRRDFVANVSHELRTPVTVIKGYAETLLSGALASDPERAVRFVEIIHSHSERLT 417

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+ D+L L+ +++G + L  S + +   +      +  K  +  I I   +       +
Sbjct: 418 SLIGDLLTLSELESGDVSLELSMVNIEGTVRHALMLLEQKAADKGITIDCSTIKAAPPIL 477

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR RL Q+   +L NA+ ++ +  T+ +KAA +      SV + G  IP      +F R
Sbjct: 478 GDRGRLEQVLINLLDNAIKYTPEKGTITVKAADEEKMLKISVTDTGMGIPPKDLPRIFER 537

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F  V  A   ++ G GLGLSIV+  +  HGG +S+ S+
Sbjct: 538 FYRVDEARSREQGGTGLGLSIVKHIVQAHGGALSVEST 575


>gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1259

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 137/263 (52%), Gaps = 18/263 (6%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++++D   AE  L +  EA   A++ K+ F+ ++S+ELRSPL  I+GFT ++  S   +L
Sbjct: 756  IDISDRKAAETELVKAKEAAEVANQAKSIFLANMSHELRSPLNAILGFTQVINGS--SNL 813

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++Q   +  I  S   LL L+N+ILDL+ ++AG + L      L  L+ E++     K 
Sbjct: 814  TTQQQNNLNIIQRSGEHLLGLINEILDLSKIEAGKIILIQEPFDLWKLIEELQDLFRIKA 873

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
             + N+++ VI +  L  ++  DR +L QI   +LSNA+ F+ KG TV L+A       + 
Sbjct: 874  SQKNLKLTVIINPNLPRYIQTDRVKLRQILINLLSNAIKFTQKG-TVCLEADLSETSPVC 932

Query: 721  ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINL 767
                        F V + G  I  D   ++F+ FV      Q ++G GLGL+I + +I L
Sbjct: 933  LIGTETLPVQLHFRVSDTGVGIEPDEIDNLFSPFVQTQSGIQSQQGTGLGLAICKGYIKL 992

Query: 768  HGGHVSISSSDEGVTTINCRIPS 790
             GG + + S     T  +  +P+
Sbjct: 993  FGGKIEVHSQPRVGTVFDLEMPA 1015


>gi|288962304|ref|YP_003452599.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288914570|dbj|BAI76055.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 385

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 140/272 (51%), Gaps = 7/272 (2%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPL 584
           L   I P P    +L      D+   E A  +  EA L   +  K+ ++ H+S+ELR+PL
Sbjct: 103 LTVRIDPAPGRGLLLVEGLADDTAHRELARLKAREAELADTNRRKSDYINHLSHELRTPL 162

Query: 585 TNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           T +IGF ++L+   LG  +S +  +    I A+   +L L+N++LDLA ++AG + L+  
Sbjct: 163 TAVIGFAEILRDQLLGPPDSPRYGEAAAQIVAAGDYMLELINNLLDLARIEAGRLDLHEE 222

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              L  +++     +A +     + +         +  AD   + Q+ + +++NA+ F++
Sbjct: 223 ECPLALIVDATLSMMAVRAERGGVAMSARLPADSPTLWADPSLVRQMLTNLVANALKFTA 282

Query: 704 KGSTVILKAARD-NGDFIFSVKNNGSSI-PEDMCKSV--FNRFVSNAHRGQRRGVGLGLS 759
           +G  V + A RD +G  I +V ++G  + PE + +++  F +    A   + RG GLGL 
Sbjct: 283 EGGHVTVSAERDADGGLILAVADDGRGMAPEQIPRALTAFTQLHDPATVAE-RGSGLGLP 341

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  + I LHGG ++I S+    TT+  R P +
Sbjct: 342 LTAALIALHGGGIAIDSAPGRGTTLRLRFPPE 373


>gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 1207

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 192/411 (46%), Gaps = 47/411 (11%)

Query: 395 PNGQTLHVIVTSNP---RGGTIWM----FENLTVQVDLETKYN---TLVKVQGETIDHLS 444
           P+G+ + + + S P     G ++     F ++T + + E +     TL++ Q E      
Sbjct: 549 PSGELIWISINSQPLCDEHGNVYAAVASFHDITARRNAEQELRFQKTLLECQTEAS---P 605

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +GV V  PD R   +N  FR +WK        G+ I    ATC+         +L  A +
Sbjct: 606 DGVLVVSPDRRCLYANQRFREMWKIT------GSPIEQ--ATCAA------SMELMLAQV 651

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSI-IPLPNAQTMLTFVNVTDSVRAE--------RAL 555
              +  R  ++   EL ++  L     I L + +T   +     S   +        R +
Sbjct: 652 CDPERVRNEIE---ELYANPNLTGKTEIELKDGRTFERYSAPVISSEGDYYGRVWFFRDV 708

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           TE+    R  + +KN FV  VS+ELR+PLT+I G   L+     G L  + +  ++    
Sbjct: 709 TER----RAIERMKNEFVAVVSHELRTPLTSIRGSLGLIAGGVAGELPPRAAAMIDIALK 764

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S  L+ L+NDILD+  +++G M      +VL++L+ +  ++      + N++I++ +  
Sbjct: 765 NSERLVRLINDILDIEKIESGKMVFKMQPVVLDELVRQTIEANRGFGQQYNVQIELTATL 824

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDM 734
                  D  R+ Q+ + ++SNA+ FS  G  V +   R+  G    +V ++G  IP + 
Sbjct: 825 PGVQVYVDPDRMTQVITNLISNAVKFSPPGCKVEVAIGREPQGRVRITVTDHGPGIPPEF 884

Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
              +F +F    +++  Q+ G GLGLSI  + +  HGG +  ++++  G T
Sbjct: 885 RDRIFQKFAQADSSNTRQQGGTGLGLSISRAIVERHGGQIGFVTATGVGTT 935


>gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
 gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
          Length = 962

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 6/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            ++V+  VR E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    S
Sbjct: 454 LLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---S 510

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L S  ++ VE +  SS +LL +++DILD + +++  +K+  S     +++N +  +    
Sbjct: 511 LPSDANRLVEAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHIVSNYLPL 570

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    D ++    + D  RL Q+ S +LSNA+ F+  G  V      D G  +
Sbjct: 571 VVKKRLELYCYIDPRVPLQLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVVCSDEGYLV 630

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I       +F+ F       QR  +G GLGL+I E  ++L  G ++I S  
Sbjct: 631 FKVRDTGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEP 690

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 691 GLGSEFGIRIP 701


>gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1286

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 128/227 (56%), Gaps = 9/227 (3%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ L+    G +N+KQ + +E I  SS+
Sbjct: 889  NQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINNKQFKALETIERSSS 948

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL+L+NDILD+A ++AG +KL+ +TI + +L       I  +  +  I++++     L 
Sbjct: 949  HLLDLINDILDVAKIEAGQIKLDCTTISVANLCESSLVFIKQQALQKRIQVEIKIPFNLP 1008

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIP 731
                D +R+ Q+   +L+NA+ F+ +   + L+  + + D          +V + G  I 
Sbjct: 1009 DLFVDERRIRQVLINLLNNAVKFTPEAGRISLEVTQLSPDISTVQNFLQIAVIDTGIGIM 1068

Query: 732  EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++    +F  F+   +A   Q  G GLGL++V+  + LHGG V ++S
Sbjct: 1069 QENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTS 1115


>gi|323700495|ref|ZP_08112407.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460427|gb|EGB16292.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1086

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 123/531 (23%), Positives = 216/531 (40%), Gaps = 66/531 (12%)

Query: 292 AIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-AFL 346
           A+D+S     E+ +++       ++ N+   +  FD+     F +R+ +EL  +   AFL
Sbjct: 445 AMDISGMKRIEVALHESENLYRTLIDNMPDIVMRFDRESRHLFVSRNVLELTGVPASAFL 504

Query: 347 ATNPS----NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLH 401
                    ++EL  F               W E+I  V+++ E     +H+   G++ H
Sbjct: 505 GKTSRELGIDEELCRF---------------WDEHIRRVFETGEPQAAEFHMNWRGRSSH 549

Query: 402 V---IVTSNPRGGTIW----MFENLTVQVDLETKYNTLVKVQGETIDHLSE--------G 446
               +       G +     +  ++T Q  LE +Y  L       +D  +         G
Sbjct: 550 FDWRLFPERDESGEVQSVFSLSRDITRQRSLEKEYELLFH---RMLDGFASHEIICDEAG 606

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V V   D R    NPAF  +       +  G  +  +     RY+ E+ G          
Sbjct: 607 VPV---DYRFLRVNPAFERITDVTAADIV-GRTLLEVFPGTERYWIETYGKVALTGEPIH 662

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           F+              D     S       Q    F ++T+ V   RAL E  +    A 
Sbjct: 663 FEHYAAE--------QDKFFNVSAFRPAPGQFACIFSDITERVLTSRALVEAKDLAESAS 714

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K+ F+ ++S+E+R+PL  I+G   LL+    G L  +Q++Y  Y   +S  L  L+ D
Sbjct: 715 RVKSEFLANMSHEIRTPLNGIMGMLQLLRA---GDLTEEQAEYAAYGIKASRRLTRLLTD 771

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           ILDL+ ++AG + +    + L D L+ ++Q  A       + +   + D        D  
Sbjct: 772 ILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAARSKGLSLVFDLPDDLPDRLFGDDT 831

Query: 686 RLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           R+ Q+   ++ NA+ ++  G      T + +   D    +F+V + G  IP+D   +VF 
Sbjct: 832 RIQQVLVNLIGNAIKYTETGGVTVEVTTLPRLRPDTVHVLFTVTDTGIGIPDDKLGTVFE 891

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F  VS+      +G GLGL+I +  I L GG +++ S     T     +P
Sbjct: 892 HFTQVSSGFTRHYQGAGLGLAITKRMIGLLGGTLAVDSEPGRGTVFGLCVP 942


>gi|261419733|ref|YP_003253415.1| histidine kinase [Geobacillus sp. Y412MC61]
 gi|261376190|gb|ACX78933.1| histidine kinase [Geobacillus sp. Y412MC61]
          Length = 470

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K+  V  VS+ELR+PL  I+G  +LL    L     +Q +Y+  I   +  L+ L
Sbjct: 238 EVDRMKSELVSTVSHELRTPLAGILGLAELLLNKPLAP--ERQRKYLTAIGQEAERLMAL 295

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGSFV 681
           +ND LD+  ++AG     +  + L  ++ ++   + + T +H  ++ ++     K     
Sbjct: 296 INDFLDVQRMEAGRQTYRWEPVDLVPIMEKIIDAEKMGTDIHTFSVSVET----KRTMIR 351

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR+RL Q+F+ ++ NA+ +S  G  V+++    +G     V++ G  IP +    +F +
Sbjct: 352 GDRERLRQLFTNLVHNAVKYSPNGGAVVIRLYEHSGCLCVDVQDEGLGIPAEALPHIFEK 411

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V N+ R +  G GLGL+IV+     HGG V++ S ++  +T   R P
Sbjct: 412 FFRVDNSDRRRIGGTGLGLTIVKEIAKAHGGEVTVVSEEKKGSTFTVRFP 461


>gi|197116777|ref|YP_002137204.1| PAS/PAC domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197086137|gb|ACH37408.1| sensor histidine kinase response regulator, PAS and PAC
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 647

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 133/253 (52%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD   AE  L    EA   A + K  F+ ++S+E+R+P+ +IIG T LL  ++L   +
Sbjct: 153 DITDRKGAEMELVLAREAAEAASKAKTEFLANMSHEIRTPMNSIIGMTQLLAYTEL---S 209

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q +YVE I  SS  LL ++NDILDL+ V+AG ++L      L   +NE+ ++     H
Sbjct: 210 AEQKEYVEGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSLRQSINEIIRTQTAAAH 269

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719
           E  +++KV I +    + V DR RL Q+   I+ NA+ F++ GS   TV L   ++    
Sbjct: 270 EKGLQLKVSIPEEIPDAVVGDRLRLKQVLLNIIGNAIKFTASGSIAVTVALAEKKEEAAR 329

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I FSV + G  I  +    +F  F        RR  G GLGLSI    + L GG +   S
Sbjct: 330 ITFSVTDTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAES 389

Query: 777 SDEGVTTINCRIP 789
                +T +  IP
Sbjct: 390 RKNAGSTFHFEIP 402


>gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
 gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
          Length = 1159

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 10/237 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L E+   L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y
Sbjct: 698 QARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQNPTRNLTAKQVEY 757

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  + + LL L+NDILDL+ V+AG M ++   +VL DL  ++K + +    E  +R 
Sbjct: 758 AHVIHTAGSDLLQLINDILDLSKVEAGKMDIHLERVVLRDLAEDLKSTFSPITVEKGLRF 817

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-------IF 721
            V ++ G     + D+ RL Q+   +LSNA+ F+ +GS  +   A   GD         F
Sbjct: 818 TVDLAPGIPADLLTDQHRLAQVLRNLLSNAVKFTERGSVELAIVATLGGDLSPATPSVTF 877

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            V + G  I E+  + +F  F        RR  G GLGLSI      L GG +   S
Sbjct: 878 KVTDTGVGIAEENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVAALLGGEIEARS 934


>gi|319783623|ref|YP_004143099.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169511|gb|ADV13049.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 506

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 139/257 (54%), Gaps = 12/257 (4%)

Query: 539 MLTFVNVTDSVRAE--RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL 593
           ML+F +  D++ AE   A +  +EA R+A++    K+ F+  +S+ELR+PL  I+GF+++
Sbjct: 226 MLSFRSEKDALIAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEV 285

Query: 594 LKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +    LG + N     Y   +  S   LL+L+N+ILDL+ ++AG  +LN   ++L  ++ 
Sbjct: 286 MSNEVLGPMSNPTYRDYAHDVHESGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLGIVE 345

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +    +  +    +IR+    + +L    AD + + QI   +LSNA+ F++ G  + ++ 
Sbjct: 346 DCCHMMELRARNKDIRVVQDFEHELPRLFADERAVRQITLNLLSNAIKFTATGGEIRVRV 405

Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
                 G +I S+K+NG  IPED    V + F   S A +   +G GLGL IV+  + +H
Sbjct: 406 GWTAGGGQYI-SIKDNGPGIPEDEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMH 464

Query: 769 GGHVSISSS-DEGVTTI 784
           GG   + S   EG   I
Sbjct: 465 GGEFELHSKLREGTEAI 481


>gi|291571293|dbj|BAI93565.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
          Length = 1390

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 5/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L +  EA   A+  K+ F+ ++S+ELR+PL  I+GFT LL  +    L S+Q +Y++ I 
Sbjct: 910  LQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQNY--GLTSQQQEYLQIIQ 967

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S   LL+L+N++LDL+ ++AG + LN +   L  LL  +   +  K    N+ + +   
Sbjct: 968  QSGKYLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQLQ 1027

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPE 732
              +  +V  D  +L Q+   +L NA+ F+  GS T+ +          F V++ G  I  
Sbjct: 1028 QDIPDYVQTDESKLRQVLVNLLDNAIKFTDAGSVTLRVSFVSSVSQLYFEVEDTGPGITP 1087

Query: 733  DMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D  + +F  FV ++  R  ++G GLGL+I + +++L GG ++I S  +G       IP
Sbjct: 1088 DEQERLFKPFVQTDVGRRHQQGTGLGLAISQQYVSLMGGKITIVSVVDGGAKFMFNIP 1145


>gi|146309326|ref|YP_001189791.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145577527|gb|ABP87059.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 640

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 5/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ ++++N FV  VS+ELR+PLT I G   L+    LG++     Q +E   ++S  L +
Sbjct: 407 KRGEQLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGAVPENMQQMLEIAQSNSQRLRH 466

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++D+LD+  + AG M+ +   + L  LL +             +R+++++ G     +A
Sbjct: 467 LIDDLLDMDKLVAGKMRFDLQPLALRPLLQQALHDNQPYAERQQVRLQLLA-GSDCQVLA 525

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D +R+ Q+ + +L+NA  FSS G  V L AA  +G    SV++ G  IP      +F++F
Sbjct: 526 DAKRVEQVLANLLANAAKFSSPGQPVELSAAPRDGWVRISVRDQGLGIPTSFKPRIFSKF 585

Query: 743 VSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + A  G   Q+ G GLGL+I +  I   GG +   S +   +T    +P
Sbjct: 586 -AQADAGDTRQQGGTGLGLAISKELIERMGGRIGFDSQEGQGSTFWFELP 634


>gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 580

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 133/243 (54%), Gaps = 12/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            F +VT+     R L E   A   A+E    K+ F+ ++S+ELR+PL ++IGF+++L+  
Sbjct: 327 AFRDVTE----RRKLRESEIARLAAEEACRTKSDFLANMSHELRTPLNSVIGFSEVLQDE 382

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G +N KQ +YV  I  S   LL+L+NDILDL+ V++G M+L  S   L D+L +    
Sbjct: 383 LYGPMNEKQREYVNNIHISGRHLLSLINDILDLSKVESGKMELELSAFSLRDMLGDSLAM 442

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
              K   + + I +  D +   + +AD+++L QI   +LSNA+ F+  G T+ + +AR  
Sbjct: 443 FKEKALRSAVGIHLEFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGTLQV-SARRM 501

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            DF+  +V + G  I       +F  F  + + +     G GLGL++ +  + LHGG + 
Sbjct: 502 PDFVEIAVADTGIGIKAQDIPKLFKPFTQLGSVYTKGFEGTGLGLALSKRLVELHGGRIR 561

Query: 774 ISS 776
           + S
Sbjct: 562 VKS 564


>gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
 gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
          Length = 1057

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 136/249 (54%), Gaps = 9/249 (3%)

Query: 532 PLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           PL N  + +  V    ++T+    E+ L E       +D +K++F+ ++S+E+R+PL  I
Sbjct: 658 PLNNDPSKIEMVCVNYDITELKETEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAI 717

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF++L+  ++      ++ +YV  +  ++ +LL L++DILDL+ ++AG ++ N     +
Sbjct: 718 VGFSNLIAETEDPD---ERREYVAIVQENNELLLKLISDILDLSKIEAGTLEFNDVEFDV 774

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           N +  E+ +S++ K+ +  + ++          V D+ R+ Q+    ++NA+ F+ +GS 
Sbjct: 775 NQMCQEIVRSLSLKVLDKPVELRFGDHLPECRLVGDKTRITQVLINFINNALKFTREGSV 834

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            +     D     F V++ G+ IPE   +SVF RFV      Q  G GLGL+I +S +  
Sbjct: 835 TLGYRCDDGMMLTFYVEDTGTGIPEQEQESVFERFVKLNSFVQ--GTGLGLAISKSIVEQ 892

Query: 768 HGGHVSISS 776
            GG + ++S
Sbjct: 893 MGGRIGLNS 901


>gi|332706978|ref|ZP_08427038.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354243|gb|EGJ33723.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 779

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 132/244 (54%), Gaps = 21/244 (8%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           E+ + E+ +ALR        A+  K+ F+  +S+ELR+PLT +IG    L     G  +S
Sbjct: 377 EQRVIERTQALRDALQAAQAANLAKSEFLATMSHELRTPLTCVIGMAATLLRWCFGQDSS 436

Query: 605 ------KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 KQ +Y++ I  +   LL L+NDILDL+ V+AG + L  S   L+ L N++  S+
Sbjct: 437 QRLPVEKQQRYLKTIQENGQHLLELINDILDLSQVEAGKLVLTISKFSLSKLANQLLSSL 496

Query: 659 ATKMHENNIRIKVISDGKLGS----FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + ++  + +++  D ++      F AD++R+ QI   +LSN + F+ +G  VIL+   
Sbjct: 497 NEQAYQQQVTLQL--DWRVPPERDCFSADQRRVKQILFNLLSNGIKFTPEGGKVILRVWP 554

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +N   +F V++ G  I +D    +F +F  +   +R +  G GLGL++ +  I LH G +
Sbjct: 555 ENHLVVFQVEDTGIGIAQDQLPLLFQKFQQLETPYRRKYEGTGLGLALTKQLIELHRGKI 614

Query: 773 SISS 776
            + S
Sbjct: 615 EVES 618


>gi|113475126|ref|YP_721187.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
 gi|110166174|gb|ABG50714.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
          Length = 853

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 153/295 (51%), Gaps = 13/295 (4%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           DDE++ L+   E L+ ++ +  +      Q       V + ++    L +  ++   A+ 
Sbjct: 420 DDEKRFLEEIAEHLAIAIYQAQLYGELQKQKQTLEKRVVERIQD---LYDAVQSAESANR 476

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK------QSQYVEYISASSTILL 621
            K+ F+  +S+ELR+PLT +IG +  L     G+  +K      Q  Y++ I  S   LL
Sbjct: 477 AKSEFLATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLL 536

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGS 679
            L+NDILDL+ V+AG   L  S   L+ +  E+ Q+   K  +N +++  +   + +L  
Sbjct: 537 ELINDILDLSQVEAGKTVLKISEFSLSKISYELLQNFREKAEQNEVKLIFEPTVNPQLDL 596

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F AD++R+ QI   +LSN + F+  G +V LK  R     IF V++ G  I ++    +F
Sbjct: 597 FAADQRRVKQILFNLLSNGIKFTPNGGSVRLKVMRYKNTAIFQVEDTGMGISQEQKPLLF 656

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F  +++ +  Q+ G GLGL++ +  + LH G + + S+    +T   ++P+++
Sbjct: 657 KKFQQLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVGSTFTVKLPAQQ 711


>gi|296155941|ref|ZP_06838780.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295893447|gb|EFG73226.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1188

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 3/234 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +D +RA+  L      L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +
Sbjct: 466 SDLLRAQDDLAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEE 525

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ ++  L  +++         
Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVTVELETVSIDATLQALEEMFKPMAAAR 585

Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           ++R+      G   +F++D QR+ QI   +LSNA+ F+  G   +  A  D G     V+
Sbjct: 586 HLRLAFERLPGTPDTFISDGQRVTQILRNLLSNAVKFTEHGEVALSVAPTDGGMLRIDVR 645

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++G  I  D    +F  F     +   Q  G GLGLSI   F  L GG ++++S
Sbjct: 646 DSGIGIAPDKLDMIFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVAS 699


>gi|302864826|ref|YP_003833463.1| ATP-binding region ATPase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|315501111|ref|YP_004079998.1| histidine kinase [Micromonospora sp. L5]
 gi|302567685|gb|ADL43887.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|315407730|gb|ADU05847.1| histidine kinase [Micromonospora sp. L5]
          Length = 448

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 1/236 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR A E K+ F+ +VS+ELR+P+T IIG   LL  S    L  +Q++ V  I 
Sbjct: 211 LDEKSAQLRAASESKSRFLANVSHELRAPVTAIIGLARLLADSASDPLTGEQARQVGLIR 270

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+  LL LVN++LDLA  ++G ++ ++S + L  +  +++ ++        + + V   
Sbjct: 271 SSAGDLLGLVNELLDLAKAESGRIEPDWSDVDLRAVFGQLRGTLRALAARPEVELVVEEP 330

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
               +  +D   L Q+   +L N + F+ +G  V L+A R  G +  SV + G  IP ++
Sbjct: 331 PAPATVRSDEVLLAQVLRNLLHNGLKFTERGE-VRLRAERRGGQWTLSVTDTGVGIPPEL 389

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + VF  F       +  G GLGL      I L GG + ++S     +T    +P+
Sbjct: 390 HERVFEEFYQVPGTTRVGGTGLGLPYARRLITLLGGTLELTSEPGRGSTFTVVLPA 445


>gi|307610980|emb|CBX00603.1| sensor histidine kinase [Legionella pneumophila 130b]
          Length = 773

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 133/247 (53%), Gaps = 12/247 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E N+ L + D+IK  F  +VS+ELR+PL  I+G  ++L   K   L S     +
Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGPLEMLLAEK--KLPSFVQNTL 234

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNI 667
             I  ++ ILL  VND+L+++ +DAG M L+Y+ I   DL+  ++Q+IA    ++ E  +
Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKL 291

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
              +    +L + + D  ++  I   ILSNA+ F+ + + V ++  + N +     +++N
Sbjct: 292 VFSMDLPDELQAQI-DPDKIQHILINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDN 350

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP D+C+++F RF        R   G GLGLSI + F+ LHGG +   ++  G    
Sbjct: 351 GPGIPSDLCETIFERFFQIEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIF 410

Query: 785 NCRIPSK 791
              +P K
Sbjct: 411 TIELPLK 417


>gi|254413254|ref|ZP_05027025.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179874|gb|EDX74867.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1658

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 9/259 (3%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++T+   AE AL E  EA   A+  K++F+ ++S+ELRSPL  I+GF  L+  S   
Sbjct: 1162 TNTDITERKLAEIALQEAKEAADAANRAKSTFLANMSHELRSPLNAILGFAQLMSNSV-- 1219

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +L  +    +  I  S   LL L+N +LDL+ ++AG + LN +T  L+ LL EV+     
Sbjct: 1220 TLPQQYQDNLRIIHHSGEHLLTLINQVLDLSKIEAGRITLNETTFNLHHLLGEVEDMFRL 1279

Query: 661  KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
            K++E  ++++      + + +  D  +L Q+   ++SNA+ F+S GS V+ +   R N D
Sbjct: 1280 KVNEKGLQLRFNWAADVPATIQTDEIKLRQVLINLVSNAVKFTSAGSVVMNVAQQRTNDD 1339

Query: 719  ----FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  F +K+ G  I  D  +S+F  F  S +    + G GLGL I   FI L GG + 
Sbjct: 1340 GRMTLYFEIKDTGCGIAADELESIFEAFVQSQSGVQSQSGTGLGLPITRKFIQLMGGEIR 1399

Query: 774  ISSSDEGVTTINCRIPSKE 792
            + S     TT    I +KE
Sbjct: 1400 VESQVSQGTTFTFDIQAKE 1418


>gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 891

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 8/246 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L  + + K+ F+ ++S+ELR+PL +++  +++L T+  G+LN  Q +Y   I 
Sbjct: 480 LEEKARQLSLSSQYKSEFLANMSHELRTPLNSLLILSNILATNTEGNLNDHQVKYAYTIH 539

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+NDILDLA V+AG + L +  + L+++    +Q       +  +  K + D
Sbjct: 540 QSGNDLLQLINDILDLAKVEAGKIDLVHGKVCLHEISEFAEQQFLPVARQKGLSFKTVVD 599

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVKNNGS 728
             L  +   D QRL+QI   +LSNA  F+ +G            +R  G   FS+ + G 
Sbjct: 600 ADLPQTLYTDEQRLMQIIKNLLSNAFKFTERGEVKFHIHHAQSGSRAKGGIAFSIIDTGI 659

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP++  + +F  F        R+  G GLGLSI  +   L GG + ++S     +    
Sbjct: 660 GIPKEKQELIFQAFQQADGTTNRKYGGTGLGLSISINMAQLLGGAIHVTSVPGKGSVFTL 719

Query: 787 RIPSKE 792
            +PS+E
Sbjct: 720 TLPSEE 725


>gi|163850345|ref|YP_001638388.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|218528903|ref|YP_002419719.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|240137418|ref|YP_002961889.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens AM1]
 gi|254559597|ref|YP_003066692.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
 gi|163661950|gb|ABY29317.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
 gi|218521206|gb|ACK81791.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|240007386|gb|ACS38612.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens AM1]
 gi|254266875|emb|CAX22674.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens DM4]
          Length = 513

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 125/246 (50%), Gaps = 7/246 (2%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607
           E+A    +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++K    G+ +     
Sbjct: 238 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHVAPAYR 297

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LLNL+N+ILDL+ ++AG   L    + L   + E +  +  +      
Sbjct: 298 EYATDIHDSGMHLLNLINEILDLSRIEAGRYDLTEEAVQLAHTVEECRHMMTLRARSKGQ 357

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
               + D  L    AD + L QI   +LSNA+ F+  G  + +K     +G    SVK++
Sbjct: 358 TFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYLSVKDS 417

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPED   +V + F   S A +   +G GLGL IV+  I+LHGG   + S     T +
Sbjct: 418 GPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGTEV 477

Query: 785 NCRIPS 790
               P+
Sbjct: 478 IVTFPA 483


>gi|2213649|gb|AAC45438.1| bZIP histidine kinase [Pseudomonas putida]
          Length = 978

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 144/284 (50%), Gaps = 25/284 (8%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572
            +++S++P+ N +  + ++     N+TD  +AE  L  KN       E +RK D  K+ F
Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITDKKKAEAMLALKNQELEQSVECIRKLDNAKSDF 184

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
              VS+ELR+PL+ I+G    L  ++ G  +    Q+ E I  ++  LL  VN +LDLA 
Sbjct: 185 FAKVSHELRTPLSLILGHWKPLWRAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689
           +DA  M L+Y    L+ L   +  +      + +I      D KL    VA  D ++  +
Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299

Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           I   +LSNA  F+  G  +   L  +R N   + +V ++G  IP  + K +F RF   + 
Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GQ+  RG GLGLSIV+ F+ LH G +S+S +  G      ++P
Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           I L  L+ +    +      N++ + V++D +L     D  ++ Q+   +  NA++  S+
Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884

Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
                 +     +  D GD  + SVK+ G  I E     +FN F +     ++ G+G+GL
Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I  +   +H G + +     G       IP+++
Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974


>gi|42524880|ref|NP_970260.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39577090|emb|CAE78319.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 838

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 131/244 (53%), Gaps = 8/244 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++ F +++     E+      EA  +A + K+ F+  +S+E+R+P+  +IG T LL  +
Sbjct: 324 ALIVFKDISRRKMVEQEWIRAREAALEASQKKSDFLAAMSHEIRTPMNGVIGMTTLLADT 383

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN +Q+ YV  I  S+  LL L+ND+LD + ++AG ++L+   + L  L+ +V + 
Sbjct: 384 ---HLNPEQTDYVGNIKRSAESLLMLINDLLDHSKIEAGKIRLDPQPLDLQFLVEDVLEM 440

Query: 658 IATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + E NI ++   DGK L  + AD  RL QI   ++ NA+ F+ KG   +  ++R +
Sbjct: 441 FKPTVAEKNIGLECRFDGKNLWHYRADAGRLRQILVNLMGNAVKFTEKGFVRLEVSSRGD 500

Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            D     +F VK+ G  + E   +S+F ++       +  G GLGLSI +  ++L GG +
Sbjct: 501 KDGKTALLFEVKDTGQGLQEHEKRSLFQKYFQAKAGMKFGGTGLGLSICKQLVDLMGGDI 560

Query: 773 SISS 776
            + S
Sbjct: 561 GVES 564


>gi|254420304|ref|ZP_05034028.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196186481|gb|EDX81457.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 759

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 160/312 (51%), Gaps = 23/312 (7%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           S  +    G  + AA IT+   E    +  +E LS +V +     L  +Q ML+ +    
Sbjct: 448 SERFTSEGGSVVTAADITAIKREETERRRAVEDLSRTVAQ-----LEASQQMLSQL---- 498

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + + E A+T + EA   A++ K+ F+ ++S+ELR+PL  I GF++++     G +  K  
Sbjct: 499 ARKYEIAMT-RAEA---ANQAKSEFLANMSHELRTPLNAINGFSEIMAAELFGPIGEKYK 554

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I  S   LL+L+NDILD+A ++AG M L+Y  + L D+  +  + +  K+ E+ +
Sbjct: 555 GYAGDILKSGQHLLSLINDILDMAKIEAGKMTLHYEPVSLRDVCEDAARLMRGKVLESGL 614

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFS 722
            ++ I  G L    AD + + Q+   ++SNA+ F+ +G TV L     K A        +
Sbjct: 615 TLE-IEAGDLPDIEADHRGVKQVMLNLISNAVKFTPEGGTVTLSLTPFKGAAGEDRVRVA 673

Query: 723 VKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             + G  I PE M +    F + V   H    +G GLGL++ +S I +HGG ++I S   
Sbjct: 674 CADTGIGIAPEHMVRLARPFEQ-VEGQHSKTTQGTGLGLALTKSLIEMHGGRLNIESEPG 732

Query: 780 GVTTINCRIPSK 791
             T ++  +P++
Sbjct: 733 VGTVVSFDLPTR 744


>gi|159184529|ref|NP_353940.2| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|159139836|gb|AAK86725.2| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 510

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 3/250 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           +VT+  R  R +  K      A++ K+ F+  VS+ELR+PL  ++GF+D+L     G L 
Sbjct: 213 DVTEMERLRRDVARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYFGRLE 272

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +YV  I  S   LL++VN +LD++ ++AG  +L   +  +++ +   +  +  + 
Sbjct: 273 NDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEAGRYELLMESFPISETIASCEAMLGLQA 332

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  + +       +G   AD++ + Q+   +  NA+ F+  G  V + AAR+ G    +
Sbjct: 333 KEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAAREGGMLKLT 392

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  D  + +   F  V N +  +  G GLGLS+V+  + LHGG   I+S    
Sbjct: 393 VSDTGIGIASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFVITSKPAE 452

Query: 781 VTTINCRIPS 790
            T +   +P+
Sbjct: 453 GTVVTITLPA 462


>gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1044

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 162/305 (53%), Gaps = 15/305 (4%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVRAE 552
           G  L A+  TSF  ER+ +    + L  + L +S+IP   +  ++ ++  V++T+ V  +
Sbjct: 538 GLLLIASGETSFSFEREHVTLAGQNLK-TQLYWSVIPGYEVDYSRVLVCIVDITELVNIQ 596

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E    A++ K+ F+ ++S+ELR+P   I+G   +L+ +    L+ +Q ++V  
Sbjct: 597 EELIQAKEQAEAANQAKSEFLANMSHELRTPFNGIMGMMQVLQNT---DLDDEQQEFVNL 653

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              SS     L++DIL+L+ ++AG M +  +   L +LL  +    + + H+  + ++ +
Sbjct: 654 SIQSSERFARLLSDILELSNIEAGKMIICPAHFSLQELLESLSGLFSAEGHQKGLALEFL 713

Query: 673 SDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD--FIFSVKNN 726
            D  +    + D  R+ Q+   ++ NA+ F+ +GS  +     +A   GD    FSV + 
Sbjct: 714 MDSNVPAEVIGDATRVKQVMFTLVGNALKFTEQGSVQVQLTPLSATKGGDVRVQFSVFDT 773

Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPED    +FN FV    ++  + +G GLGLS+V+  ++L  G++S+ S  +  TT+
Sbjct: 774 GIGIPEDRLSDLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDLMNGNISVESEVDRGTTV 833

Query: 785 NCRIP 789
           +  +P
Sbjct: 834 HVVLP 838


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040378|gb|ACT57174.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 10/242 (4%)

Query: 552 ERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-S 607
           E A +  +E  ++A+E    K+ F+  +S+ELR+PL  I+GF+++++   +G LN++   
Sbjct: 229 EVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYK 288

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I  S   LLNL+N+ILDL+ ++AG  +L+ S I L D++ E    +  +  E NI
Sbjct: 289 EYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNI 348

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I    D  L S  AD + + Q+   +LSNA+ F++ G  V +        G +I S+K+
Sbjct: 349 EIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYI-SIKD 407

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           NG  I E    +V   F   S A +   +GVGLGL I +S +  HGG   I S   EGV 
Sbjct: 408 NGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVE 467

Query: 783 TI 784
            I
Sbjct: 468 VI 469


>gi|121603982|ref|YP_981311.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120592951|gb|ABM36390.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1158

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 132/230 (57%), Gaps = 3/230 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L E+ E L +A   K+ F+ ++S+ELR+PL + +  + LL  ++ G+L+++Q ++
Sbjct: 468 QAQIQLEERAEELSRASRYKSEFLANMSHELRTPLNSSLILSKLLSDNQKGNLDAEQVKF 527

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I ++   LLNL+NDILD++ V+AG ++L+  TI+L DL   +  +      + N+  
Sbjct: 528 AQSIYSAGNDLLNLINDILDISKVEAGKLQLSPETILLGDLAASLNSTFGPLAGQKNLAF 587

Query: 670 KVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +V+ + G   + V+DRQR  QI   +LSNA+ F+  G   +  + +  G   F+V+++G 
Sbjct: 588 EVVVEPGTPATLVSDRQRAEQILKNLLSNAIKFTEAGRVSLSVSPQPGGMIGFAVQDSGI 647

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I ++  + +F  F        RR  G GLGLSI      L GG +++ S
Sbjct: 648 GIRQEQQQIIFEAFRQADGTTSRRYGGTGLGLSISRDLTALLGGSITVQS 697


>gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1237

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 147/297 (49%), Gaps = 17/297 (5%)

Query: 510 ERKSLQGTLELLSDS------VLEYSIIPLPNAQTMLT---FVNVTDSVRAERALTEKNE 560
           E++ + G  EL           LE  + P+ +    L     +++++   AE+ L E+ E
Sbjct: 533 EQRRMGGNRELFGQHREGRLIPLEVGLSPIRSGNESLVQAVIIDISERRAAEQKLREQAE 592

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L  A+  K+ F+ ++S+ELR+PL +I+  +D L+ +  G+L  KQ+++ + +  + + L
Sbjct: 593 QLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLAGNLTEKQTKHADIVHRAGSDL 652

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+ND+LDLA V++G M+L    I + D+L E+  S+        + +    D  +   
Sbjct: 653 LQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASLRPMAELKGLSLHTQIDAGVPRV 712

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDM 734
           + +DR RL QI   +LSNA+ F+ +G   +  ++    +       FSV++ G  I    
Sbjct: 713 IHSDRVRLHQILRNLLSNALKFTDQGEVTLTVSSEGRQEDERELLCFSVRDTGIGIDPAQ 772

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + VF  F        RR  G GLGL+I    +    G + + S+    +T   R+P
Sbjct: 773 HEQVFQAFQQIDGSTSRRFGGTGLGLAITRQLVLALDGDIGLQSTPGQGSTFTVRLP 829


>gi|83312195|ref|YP_422459.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947036|dbj|BAE51900.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 657

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/491 (23%), Positives = 207/491 (42%), Gaps = 31/491 (6%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL----PEQL 369
           ++   + +FD +  L   N+ F +L +I  +F     +  E + +     +     P +L
Sbjct: 179 HMPQGVCLFDNDLNLVVANKIFFDLTQIPASFNVKGINFHEFMLYNAQRGEYGPGDPAEL 238

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
             +  +     + +  E H      P+G  + V     P  G I  F ++T +   E   
Sbjct: 239 ANRRLE-----IARRMEPHAFDRIRPDGTVIEVRGNPIPGRGFISTFTDITARAKAEESL 293

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                +    +D     V +   DG I  L+  A   L  T++  +              
Sbjct: 294 REAATMARAMLDAPGLLVLLIRMDGTIVDLNQEAATGLSSTKDAMIGANIFTVMPPKVAE 353

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFV 543
           R +  +    +F      F+DER               E ++ P P  Q      M+   
Sbjct: 354 RRFAYAQ-QAVFEGHAVYFEDERDG----------RWFETTMTPYPMDQDGVHRVMIIAH 402

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT    AE+ L E     + A+  K  F+  +S+ELR+PL  I+GF++++     G + 
Sbjct: 403 DVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIIAREMFGPVG 462

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y + I+++   LL ++NDILD++ ++ G   L    +  ++L++   + + T+  
Sbjct: 463 DRYRIYGQDINSAGQHLLAMINDILDISRIEIGAFTLCVEQVNPHELVDSCLRLVTTRAE 522

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFS 722
              IR++      L S + D +R  QI   +L NA+ F+  G +V L+ A + +G   F 
Sbjct: 523 AAGIRLREDLPETLPSLMIDSRRTKQILINLLGNAVKFTPAGGSVTLRGALQSDGGMAFH 582

Query: 723 VKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           V + G  + E    +  S F +  +   R +  G GLGL + +S   LHGG + I S+  
Sbjct: 583 VADTGIGMSEADIAIALSPFGQVDTGLDR-RFEGAGLGLPLAKSLAELHGGSLEIISTPG 641

Query: 780 GVTTINCRIPS 790
             TT++   P+
Sbjct: 642 EGTTVSVYFPA 652



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 56/286 (19%), Positives = 102/286 (35%), Gaps = 40/286 (13%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L +L   I++F  +  L   NR F +L +    FL       +++ F     +     +
Sbjct: 23  VLDHLDQGISVFSADLRLILWNRRFTDLHDFPEGFLTHGLGFADIIRFNAQRGEYGSDCD 82

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV--QV----- 423
            +    +        + H+     PNG  L +I    P GG +  + ++TV  QV     
Sbjct: 83  VEATVRHRVDAAMEFQAHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQVAENLR 142

Query: 424 ------------------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                             D E ++    +    T+ H+ +GV +F  D  + ++N  F  
Sbjct: 143 DSNDRLDQMVERRTQALQDSEERHRAYGEFLEATVKHMPQGVCLFDNDLNLVVANKIFFD 202

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY--YNESDGWDL------FAAIITSFDDERKSLQGT 517
           L +   +    G +        ++   Y   D  +L       A  +     +R    GT
Sbjct: 203 LTQIPASFNVKGINFHEFMLYNAQRGEYGPGDPAELANRRLEIARRMEPHAFDRIRPDGT 262

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
                  V+E    P+P    + TF ++T   +AE +L E     R
Sbjct: 263 -------VIEVRGNPIPGRGFISTFTDITARAKAEESLREAATMAR 301


>gi|86145206|ref|ZP_01063537.1| putative histidine kinase [Vibrio sp. MED222]
 gi|85836783|gb|EAQ54903.1| putative histidine kinase [Vibrio sp. MED222]
          Length = 1067

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 143/281 (50%), Gaps = 16/281 (5%)

Query: 508 DDERKSL----QGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           DD R SL    QG  EL L    +E   I   +A+  LT     D+ RA+    E  +  
Sbjct: 338 DDTRPSLDKLIQGKDELSLFAQQVERLTIEREHAKEKLTIAK-EDAERAKEDAEEAKDHA 396

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L   Q  YV+ I  SS +LL+
Sbjct: 397 IQASKAKSSFLANMSHEIRTPLNGVIGISEILSDT---PLTPTQRDYVDTIETSSQLLLS 453

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           L+NDILD + +++G++ ++  +  + + + ++   +A K  E  I + V IS       +
Sbjct: 454 LINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPDTPARVM 513

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL QI    +SNA+ F+++G   +    L  A +N    FSV++ G  I +   K 
Sbjct: 514 IDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQQQKQ 573

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  F        R+  G GLGL+I    + L GG + + S
Sbjct: 574 IFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDS 614


>gi|91976495|ref|YP_569154.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91682951|gb|ABE39253.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 771

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 182/407 (44%), Gaps = 52/407 (12%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           TV+ DL  +         + I+ L E   ++  D R+ L N  F+ L K  ++ ++PGT 
Sbjct: 370 TVEADLRLR---------DAIETLPEAFVLWDSDNRLVLCNSHFQRLHKLPDSAIAPGTS 420

Query: 480 IRNI----------AATCSRYYNESDGWDLFAAIITSFDD-------ERKSLQGTLELLS 522
              +             C        G   F A     DD       ER++  G    + 
Sbjct: 421 YETVIEVGQMPEIRTRQCDVGAGSPPGARTFEA---QLDDGSWLHISERRTKDGGYVAVG 477

Query: 523 DSV----------------LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            ++                L  ++  L  +Q  L    +  +  A +   EKN A  +A+
Sbjct: 478 TNITRIKAHEQKLVDNDLRLRATVADLKISQVKLERQAIELADLARKYSEEKNRA-EEAN 536

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVN 625
           + K+ F+ ++S+ELR+PL  IIGF++++ +   G+L S++ Q Y   I  S   LL ++N
Sbjct: 537 QAKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVIN 596

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684
           DILD++ ++AG M+L    + L   L E  + +A +    ++ ++  I DG     VADR
Sbjct: 597 DILDMSKIEAGRMRLEMEELDLARTLGESLKVVAGRADNKHLELRAEIEDGI--PIVADR 654

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           + + QI   +LSNA+ F+  G  V +++       +  + ++G  I     + +   F  
Sbjct: 655 RAIKQILINLLSNAVKFTPDGGRVTVRSRTLEDSIVMMIADSGIGIAPQSLRRLGQPFEQ 714

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V +       G GLGL+I +S   LHGG + + S+    T +   +P
Sbjct: 715 VESQLTKTYHGSGLGLAIAKSLTRLHGGSMRLRSTLGAGTVVMVTLP 761


>gi|218676627|ref|YP_002395446.1| putative histidine kinase [Vibrio splendidus LGP32]
 gi|218324895|emb|CAV26666.1| putative histidine kinase [Vibrio splendidus LGP32]
          Length = 1067

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 143/281 (50%), Gaps = 16/281 (5%)

Query: 508 DDERKSL----QGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           DD R SL    QG  EL L    +E   I   +A+  LT     D+ RA+    E  +  
Sbjct: 338 DDTRPSLDKLIQGKDELSLFAQQVERLTIEREHAKEKLTIAK-EDAERAKEDAEEAKDHA 396

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L   Q  YV+ I  SS +LL+
Sbjct: 397 IQASKAKSSFLANMSHEIRTPLNGVIGISEILSDT---PLTPTQRDYVDTIETSSQLLLS 453

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           L+NDILD + +++G++ ++  +  + + + ++   +A K  E  I + V IS       +
Sbjct: 454 LINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPDTPARVM 513

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL QI    +SNA+ F+++G   +    L  A +N    FSV++ G  I +   K 
Sbjct: 514 IDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQQQKQ 573

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  F        R+  G GLGL+I    + L GG + + S
Sbjct: 574 IFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDS 614


>gi|332799516|ref|YP_004461015.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332697251|gb|AEE91708.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 572

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           RK ++++  F+  +S+ELR+PLT + G+T+ L    L     +  +Y+  I   +  L  
Sbjct: 343 RKLEDLRKEFLGDISHELRTPLTYLQGYTEAL-LDGLVENREEHDRYLNVILEETLRLRR 401

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           LV+++L L+ ++AG + +    + + DL+  V + +     + NI +K+ I D  + S  
Sbjct: 402 LVDELLQLSHIEAGHLNIKKDRVSIKDLIERVSKKVLPICDDKNIELKIEIED--IPSIT 459

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  R+ Q+   ++ NA+ +SS  S +I+KA       I SVK++GS IPED    ++ R
Sbjct: 460 ADEDRIEQVMINLIDNAVRYSSNDSKIIIKAQSCKEGIIISVKDSGSGIPEDELPFIWER 519

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   Q+ G GLGL+IV+  + LHGG V   +  EG    +  +P
Sbjct: 520 FYKVDKSRTRQKSGTGLGLAIVKKIVELHGGRVWAKNCPEGGAEFSFLMP 569


>gi|284052123|ref|ZP_06382333.1| GAF sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 928

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA   A+  K+ F+ ++S+ELR+PL  I+GFT LL  +    L S+Q +Y++ I 
Sbjct: 448 LQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQNY--GLTSQQQEYLQIIQ 505

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+L+N++LDL+ ++AG + LN +   L  LL  +   +  K    N+ + +   
Sbjct: 506 QSGKYLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQLQ 565

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPE 732
             +  +V  D  +L Q+   +L NA+ F+  GS T+ +          F V++ G  I  
Sbjct: 566 QDIPDYVQTDESKLRQVLVNLLDNAIKFTDAGSVTLRVSFVSSVSQLYFEVEDTGPGITP 625

Query: 733 DMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D  + +F  FV ++  R  ++G GLGL+I + +++L GG ++I S  +G       IP
Sbjct: 626 DEQERLFKPFVQTDVGRRHQQGTGLGLAISQQYVSLMGGKITIVSVVDGGAKFMFNIP 683


>gi|89052756|ref|YP_508207.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88862305|gb|ABD53182.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 716

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 177/387 (45%), Gaps = 53/387 (13%)

Query: 422 QVDLETKYNTLVKVQGETIDHLS---EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +V+LE      +  Q    D L+   +G A+F  D R+  +NPAF  ++    +     T
Sbjct: 67  EVELEVVTERALMAQRRLWDALTATEDGFAIFDRDWRLVAANPAFFLIFDGISDVTEGAT 126

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           +         R   E    DL               Q   + + + V  +  +P+PN   
Sbjct: 127 Y-----EAILRVATEEGIVDLQG-------------QNADDWVEEMVARWEKVPIPNVDV 168

Query: 539 ML--------------------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L                      V++T ++R ER L+E  +A   A+  K+ F+ ++S+
Sbjct: 169 KLWNGAYIRLNDKQTPQGDFVSLSVDITPNIRRERELSEARDAAEAANRAKSHFLANMSH 228

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  ++   +LL+ +   +L+ +Q  Y + I +S   LL ++NDILD + ++AG +
Sbjct: 229 EIRTPMNGVVSMAELLRDT---ALDEEQQMYADTIRSSGEALLVIINDILDFSKIEAGKL 285

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
           +L+  T  LN ++ E+ + I   +   ++ +++  D  L    + DR R+ QI + ++ N
Sbjct: 286 ELHEETFDLNAMVGEIFRLIQPGIASKDLELRLDYDIFLPPLLIGDRGRMRQILTNLIGN 345

Query: 698 AMDFSSKGST---VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           A+ F+ KG     V+     D  D +     V+++G  I  D  + VF  F        R
Sbjct: 346 AVKFTEKGHVTVRVLSVPPMDQPDALGISIVVEDSGVGIAPDQQEHVFGEFNQVEDEANR 405

Query: 752 R--GVGLGLSIVESFINLHGGHVSISS 776
           R  G GLGL+I +  I+L GG + + S
Sbjct: 406 RHDGTGLGLAITKRLISLMGGKMWLES 432


>gi|226357739|ref|YP_002787479.1| histidine kinase, classic [Deinococcus deserti VCD115]
 gi|226319982|gb|ACO47975.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 872

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 176/389 (45%), Gaps = 49/389 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTH--IRNI 483
           +++N LV      ++ L EGV      GR  L+NPA  + L  T E+ +    H  I + 
Sbjct: 507 SRFNELV------LNSLGEGVTTIDAQGRSTLANPAALKMLGYTAEDFMGRPQHALIHHS 560

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV----------LEYSIIPL 533
               S +  E+   +++AA +           G +   +D V          +EY+  P+
Sbjct: 561 YPDGSPFPREA--CEIYAAFV----------DGQVHRANDEVFWRKDGSSFPVEYTSTPI 608

Query: 534 PNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            N       ++L F +VT+  RAE  L + N+ LR+++     F    S++L+ PL  + 
Sbjct: 609 LNESGEIEGSVLVFRDVTERQRAEATLRQANDELRRSNAELEQFAYVASHDLQEPLRTVT 668

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI---MKLNYSTI 645
            F+ LL     G  +++   YV  I+  +  +  L+ D+L  + V  G    +++N   I
Sbjct: 669 SFSQLLAKKYAGQTDARGQMYVRLITEGTQRMTQLLQDLLAFSRVAKGAADPVRVNTGVI 728

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS--S 703
                L +V Q +A ++     ++ +   G++   + D  +L Q+F  ++ NA+ FS   
Sbjct: 729 -----LAQVSQDLAAQIQHTGAQLHI---GEVPDVLGDASQLRQLFQNLIGNALKFSHPE 780

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +G  V + A  D G   F V++NG  I  +  + +F  F     R Q  G G+GLSI   
Sbjct: 781 RGPVVWVGAECDGGLVRFRVQDNGVGIAPEYFERIFTIFQRLHTREQYEGSGIGLSIARK 840

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +  HGG + + S+    TT    +P+ E
Sbjct: 841 IVERHGGRIWLESTPALGTTFYFTLPAVE 869


>gi|186682207|ref|YP_001865403.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464659|gb|ACC80460.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1098

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 140/259 (54%), Gaps = 13/259 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+ PL +   +    ++T   + E AL +  E    A+  K+ F+ ++S+ELR+PL  I+
Sbjct: 586 SVSPLSDNTVLWVARDITKLKKTEAALKQAKETADAANLAKSQFLSNMSHELRTPLNIIL 645

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GFT LL  ++  SLNS+Q +Y++ I+ S   LL L+ND+L+++ ++AG + L+ +   L 
Sbjct: 646 GFTQLLLRNR--SLNSQQQEYLDTINRSGEDLLTLINDVLEMSKIEAGRVILSETNFDLY 703

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
            LL+ ++Q  A K     +++ +     +  ++ AD  +L Q+   +L NA+ F+  G  
Sbjct: 704 GLLDRLQQMFALKAQSRGLQLILERSPTIPQYICADESKLRQVLVNLLGNAIKFTRIGQ- 762

Query: 708 VILKAARDNGDFI--------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGL 758
           V L+    N +          FSV++ G  I +     +F  FV + A +  + G GLGL
Sbjct: 763 VTLRVETPNQNITPDEPITLNFSVEDTGCGIADSDFNRLFEPFVQTEAGQKAQEGTGLGL 822

Query: 759 SIVESFINLHGGHVSISSS 777
            I + F+ L GG + ++S+
Sbjct: 823 PISQRFVQLMGGDIRVNST 841


>gi|307155062|ref|YP_003890446.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985290|gb|ADN17171.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1305

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 133/239 (55%), Gaps = 6/239 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L +  E    A++ K+ F+ ++S+ELR+PL  I+GFT LL  ++  SLN KQ  +V  I 
Sbjct: 822  LKKAKERADAANQAKSEFLANMSHELRTPLNAILGFTQLL--ARDSSLNQKQQDFVGIIG 879

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S   LL+L+ND+L+++ ++AG + LN +   L  LLN +++    K    N+++    D
Sbjct: 880  RSGEHLLSLLNDVLEMSKIEAGRITLNENDFDLYRLLNILEEMFQLKAQSKNLQLIFHCD 939

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI-FSVKNNGSSIP 731
              +  ++  D  +L Q+   ++ N + F+  GS ++ ++ + +N   I F V++ G  I 
Sbjct: 940  PDVPQYIKTDESKLRQVLINLIGNGIKFTETGSVMLRVRVSPENSQAILFEVEDTGPGIG 999

Query: 732  EDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +    +F  FV   + R  + G GLGL I + F+ L GG++S++S+    +T +  IP
Sbjct: 1000 TEELDILFQAFVQTVSGRKSQEGTGLGLPISQKFVELMGGNISVNSTLHKGSTFSFEIP 1058


>gi|110834488|ref|YP_693347.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
 gi|110647599|emb|CAL17075.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
          Length = 930

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 132/233 (56%), Gaps = 11/233 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL KA  IK+ F+ ++S+E+R+PL  IIGFT LL  S L   +++Q +Y+  I  S+
Sbjct: 281 RKEAL-KASHIKSEFLANMSHEIRTPLNGIIGFTKLLHRSPL---SARQEEYLSTIHKSA 336

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-RIKVISDGK 676
             LL ++ND+LD + ++AG + L+++ + L+DL+ +V+  +A    E  + +  +I    
Sbjct: 337 ESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQASIIYSDV 396

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPE 732
             + + D  R+ Q+ + +LSNA+ F+  GS V+   L+  R     I  +V + G  + +
Sbjct: 397 PVALLGDPLRIRQVLTNLLSNAIKFTDHGSVVVRAMLEEDRGAEAIIKITVTDTGHGLSQ 456

Query: 733 DMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +  K++F  F     + R Q  G GLGL+I +  +   GG + I S +E  +T
Sbjct: 457 ENQKNLFRAFTQTDQSARRQEGGTGLGLAISKRLVESMGGEIGIESCEERGST 509


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 16/226 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+ +  R  DE    FV  VS+ELR+PLT+I G   +L +  L + +S+Q + +  
Sbjct: 706 RDVTERKQIERMKDE----FVSVVSHELRTPLTSIYGSLGMLASGLLPT-DSEQGKRLLQ 760

Query: 613 ISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIR 668
           I+A ST  L+ L+NDILD+  +++G  K+      + DL+ +   V Q +A K     + 
Sbjct: 761 IAADSTERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVNVIQPLADKAGVT-LS 819

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I  +S    G  +AD  R++Q  + +LSNA+ FSS GSTV L A ++  + + ++K+ G 
Sbjct: 820 ISALS----GQVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLGAQQEGDEVLLTIKDTGR 875

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            IP D  +S+F RF  V ++      G GLGL+I +S +  HGG +
Sbjct: 876 GIPTDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRI 921


>gi|309790646|ref|ZP_07685199.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227312|gb|EFO80987.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 717

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 180/372 (48%), Gaps = 62/372 (16%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           G+   +L  G+A+   +G++  SNPA+   W         G H        +R+      
Sbjct: 359 GQVFSNLPTGLALLDINGKVLRSNPAWDLHW---------GLH------GVARHETFHVT 403

Query: 497 WDLFAAIITSFDDERK--------------SLQGTLELLSDSV-LEYSIIPLPNAQTMLT 541
            DL   ++    D  K               L  T+ L++    LE   +P  +++  +T
Sbjct: 404 LDLIEHLLPRLQDPHKLTTFFEQMQRTPGNDLLTTVHLMNPRQDLELRSVPTRDSKDRIT 463

Query: 542 --FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                V+D  R            R+AD +KN FV  VS+ELR+PLT+I+G+T+LL+T + 
Sbjct: 464 GRLWAVSDVTRE-----------READRLKNEFVSIVSHELRTPLTSILGYTELLRTREF 512

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                ++ Q++  +   +  L  LV D+L ++ ++AG +KLN   I L +++ E+   + 
Sbjct: 513 AP--EERQQFITTVFNEAERLSQLVEDLLGMSRIEAGKVKLNRWVISLTNIVYELTTQLN 570

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARD 715
           T + ++ + I +   G++    ADR ++ QI   +L+NA+ +S  G  + L       RD
Sbjct: 571 TSLIKHRLLIDIT--GEIPPIYADRDKVKQIIFNLLTNAIKYSPNGGEIQLTIREAQKRD 628

Query: 716 -NGD------FIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
             GD       + SV++ G  + PED+ + ++ RF  V N +  +  G GLGLSI  + +
Sbjct: 629 LPGDHPLGQWIVVSVRDEGIGMAPEDLPR-IWERFYRVDNTNTRKIGGTGLGLSISRALV 687

Query: 766 NLHGGHVSISSS 777
            LHGG + ++S+
Sbjct: 688 ELHGGRIWVTST 699


>gi|71908897|ref|YP_286484.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
 gi|71848518|gb|AAZ48014.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 856

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 179/384 (46%), Gaps = 26/384 (6%)

Query: 404 VTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           V + P G GTI  F ++  +   E K     +   + I+ + +  A+F  + R+ L N  
Sbjct: 333 VAARPDGEGTIISFRDIADRHAAEIKLQRFQQRLVDAIEAMDDAFALFDGEDRLILHNLR 392

Query: 463 FRSLWKTEENRLSPGTH----IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT- 517
           F  L+  E + +  G      I +IA     Y   +DG + + A  T  +  R++   + 
Sbjct: 393 FAELFSPESSTIRIGMSFSEFIHDIAVQ-GLYPQTTDGGNDWLA--TRMEMHRQAAGSSE 449

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           + L + S L  +        T++ + +V++  RA  A  + ++A       K+ F+  +S
Sbjct: 450 IPLANGSWLRITERHTREGGTVVIWSDVSNLKRALIAADQGSQA-------KSEFLARMS 502

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  I+GF  +L+      LN  Q +YV +I      LL L+N+ILDL+ +++G 
Sbjct: 503 HELRTPLNAILGFARVLEKDAASPLNDAQQEYVHHILHGGQHLLGLINEILDLSAIESGK 562

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +K+    I L  +L+E    I        I +K IS  +  +  ADR+RL Q+   +LSN
Sbjct: 563 LKVEIEDIDLPSVLHECLALIKPLASNREITLK-ISGSESATVAADRKRLKQVLLNLLSN 621

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRG 753
           A+ ++  G  V +            + + G  IP ++ + VF  F    + N+      G
Sbjct: 622 AIKYNRHGGEVQVNIGATPSGIRLDISDTGQGIPPELAQRVFQPFDRLGLENSE-----G 676

Query: 754 VGLGLSIVESFINLHGGHVSISSS 777
            G+GL+I    + L GG +   S+
Sbjct: 677 TGIGLAITRRLVELMGGSICFEST 700


>gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
 gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
          Length = 1152

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 5/227 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K + L +A   K+ F+ ++S+ELR+PL + +    LL  ++ G+L  +Q ++   I +S 
Sbjct: 473 KAQELEQASRYKSDFLANMSHELRTPLNSSLILAKLLADNRDGNLTEEQVKFARTIQSSG 532

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+NDILDL+ ++AG M +N   +    L +++ +       E  +  +V +   L
Sbjct: 533 NDLLALINDILDLSKIEAGQMDINAEPVSFRRLASDLTRMFEPLAGEKGLTFRVEAHDTL 592

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
              F +DRQRL Q+   +LSNA+ F+ +GS V+L+ +  N    F+V + G  I  +  +
Sbjct: 593 PDLFDSDRQRLEQVLKNLLSNALKFTERGS-VVLRMSAANNKVHFAVSDTGIGISAEQQQ 651

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           S+F  F        R+  G GLGLSI      L GGH+ + S  DEG
Sbjct: 652 SIFEAFRQADSTISRKYGGTGLGLSISRELSRLLGGHIELKSEPDEG 698


>gi|115372873|ref|ZP_01460178.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818489|ref|YP_003950847.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370140|gb|EAU69070.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391561|gb|ADO69020.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 463

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 134/239 (56%), Gaps = 9/239 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ D +++SF+  VS+ELR+PL +II +++LL     G LN +Q Q V+ I+     LL
Sbjct: 204 LREMDRLQSSFLGTVSHELRTPLASIIAYSELLSEGITGMLNPEQLQCVQSITEMGRTLL 263

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSF 680
           +L+  ILD++ ++AG ++L ++ + + +++     S+  +     ++++V+  + +    
Sbjct: 264 DLITSILDISQLEAGKLRLAFAPVDMAEVVVSAVSSVTPQSRRKGLKLEVVLPELRQPRV 323

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKNNGSSIPEDM 734
           +AD+ RL Q+   +L+NA+ F+ +G      S V  +       + F V++ G  I +D 
Sbjct: 324 LADKGRLYQVLVNLLANALKFTPEGHVRVRLSEVGPQEELGTLGYRFCVEDTGVGIRQDQ 383

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + +F  F  V ++   +  GVGLGLSIV+ F+  HGG V ++S     +     +PS+
Sbjct: 384 LERIFQTFYQVDSSSTREFGGVGLGLSIVKRFVEGHGGKVLVTSQPGQGSCFTAVLPSR 442


>gi|188580116|ref|YP_001923561.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179343614|gb|ACB79026.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 513

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 7/246 (2%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-S 607
           E+A    +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++K    G+  +    
Sbjct: 238 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHAAPAYR 297

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LLNL+N+ILDL+ ++AG   L+   + L   + E +  +  +      
Sbjct: 298 EYATDIHDSGMHLLNLINEILDLSRIEAGRYDLSEEAVQLAHTVEECRHMMTLRARSKGQ 357

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
               + D  L    AD + L QI   +LSNA+ F+  G  + +K     +G    SVK++
Sbjct: 358 TFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYVSVKDS 417

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPED   +V + F   S A +   +G GLGL IV+  I+LHGG   + S     T +
Sbjct: 418 GPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGTEV 477

Query: 785 NCRIPS 790
               P+
Sbjct: 478 IVTFPA 483


>gi|146305210|ref|YP_001185675.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145573411|gb|ABP82943.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1168

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 3/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  L E+ E L++A   K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q ++
Sbjct: 479 RIQAQLEERAEELQRASRYKSEFLANMSHELRTPLNSSLILAKLLAENARGNLDEEQVKF 538

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I ++   LLNL+NDILD+A V+AG +++      L  +L  +         E  +  
Sbjct: 539 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPERTPLAGMLESLSDVFEPLARERGLSF 598

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++    +L  +   DRQR  QI   +LSNA  F+ +G   +  +  D     F+V ++G 
Sbjct: 599 EIERQAELPQTLFTDRQRAEQILRNLLSNAFKFTDRGGVTLRVSRHDEQTLAFAVSDSGI 658

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D    +F  F        RR  G GLGLSI      L GG + +SS     +T   
Sbjct: 659 GIAPDQQAVIFEAFRQADGTTNRRYGGTGLGLSISRDLAGLLGGSIGVSSVPGEGSTFTL 718

Query: 787 RIPSK 791
            +P +
Sbjct: 719 LLPER 723


>gi|60681532|ref|YP_211676.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60492966|emb|CAH07744.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 899

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E    +D++K++F+ ++S+E+R+PL  I+GF+ ++  S       ++ +Y E 
Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + A++  LL L+N+ILDL+ +++GI++  Y  + L+ L  E+  +   +  +  + ++  
Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHPLCKEIHDAHVFRCPQ-GVELRFD 611

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S  +  S  +D+ R+ Q+FS ++ NA  F+++GS V     ++    +F VK+ G  I  
Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    VF RF    +  Q  G GLGLSI ++ I   GG +++SS     TT    +P
Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|239616520|ref|YP_002939842.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505351|gb|ACR78838.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 559

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 142/255 (55%), Gaps = 3/255 (1%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F  +T++ +  + + + N  +++ + +K+ F+  +S+ELR+PL +I GF  ++    
Sbjct: 291 LIHFTILTNARKMIKTIEQDNIKIKELERLKSEFLATMSHELRTPLNSITGFVSMILQGI 350

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G +N +Q + +  + +SS  LLNL+NDILD++ ++AG M  +     + D+++EV Q++
Sbjct: 351 SGEINEEQRKQLSMVHSSSIHLLNLINDILDISKIEAGRMSFSKERFNIKDVISEVVQNV 410

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           +  + +  +++      ++    +D++R+ QI   ++SNA+ F+ KG  V +K   D   
Sbjct: 411 SLLISKKEVKLITEIPDEIPEIYSDKRRVFQILLNLVSNAIKFTEKGE-VRIKCEVDGNK 469

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV + G  I E+  +++F  F  +S + R + +G GLGL + +  + L GG + + S
Sbjct: 470 LKISVSDTGKGIKEEDMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVES 529

Query: 777 SDEGVTTINCRIPSK 791
                +T    +P K
Sbjct: 530 EYGKGSTFTFTLPLK 544


>gi|323691898|ref|ZP_08106151.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323504050|gb|EGB19859.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1053

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 14/252 (5%)

Query: 544 NVTDSVRAERAL-TEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +VTD + AERA  TE   AL   R+A   K+ F+  +S+++R+P+  I+G T L K +  
Sbjct: 643 DVTDMLAAERAAKTELERALKLSREASLAKSDFLSAMSHDIRTPMNAIMGMTTLAKANSG 702

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             +  +    ++ ISA+S  LLNL+ND+LD+  ++   + LN   I L DL+ ++ + IA
Sbjct: 703 DPV--RVLDCLQKISAASGHLLNLINDVLDMNKIERAQITLNREKIYLPDLIKQIGEIIA 760

Query: 660 TKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +  +  +  +++  G +   F  D  R+ QI   IL NA+ F+ +G +V   A    G 
Sbjct: 761 PQAEQAGLCCEILPGGIRNPCFYGDTLRISQILINILGNAVKFTPRGGSVRFLAEEIPGA 820

Query: 719 -------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                  + F+V++ G  + ++    +F  FV +    +  G GLGLSIV+  ++L GG 
Sbjct: 821 AGSGQACYRFTVRDTGIGMAKETLDHLFEPFVRSRAVSRVEGTGLGLSIVKGLVDLMGGS 880

Query: 772 VSISSSDEGVTT 783
           VS+ S  E  TT
Sbjct: 881 VSVQSEPEKGTT 892


>gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 568

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 141/263 (53%), Gaps = 10/263 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           A+ +   +++T  V  E+AL           E    AD +K++F+  +S+ELR+PL +II
Sbjct: 301 AEILSIGIDITQLVHTEQALRRTLDELAWAKERAESADHLKSAFLATMSHELRTPLNSII 360

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GFT +L     G +N +Q++ +  +  S+  LL+L++D+LD++ ++AG +K+ +    L 
Sbjct: 361 GFTGILLQGLSGPINDEQAKQLGMVKNSANHLLSLISDVLDISKIEAGQLKVEHEPFDLR 420

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           + + +V QS+     +  + +      ++G+   D +R+ Q+   +LSNA+ F+ +G  V
Sbjct: 421 ESILKVVQSVRPLAEKKGLDLSCDLAEQVGNISGDARRVEQVLLNLLSNALKFTEQGG-V 479

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
            +   R+   F+ SV+++G  I ++  + +F  F  V      +  G GLGLSI +  + 
Sbjct: 480 RVSCGREGDAFLTSVRDSGIGIKDEELERLFKPFHQVDTGLSRKYEGTGLGLSISKKLVE 539

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L GG + + SS    +T    +P
Sbjct: 540 LMGGEIRVESSPGKGSTFAFTLP 562


>gi|118587761|ref|ZP_01545171.1| PAS domain protein [Stappia aggregata IAM 12614]
 gi|118439383|gb|EAV46014.1| PAS domain protein [Stappia aggregata IAM 12614]
          Length = 784

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 135/248 (54%), Gaps = 11/248 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           A++   EK  A   A++ K+ F+ ++S+ELR+PL  IIGF+D++     G + + + S Y
Sbjct: 538 ADKYQEEKTRA-EAANKAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPVGTDRYSDY 596

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I +S T LLN++NDILD++ ++AG M +   T+  ++   +  + +     E NI +
Sbjct: 597 CKDIYSSGTYLLNVINDILDMSKIEAGRMTIETETVNASESAEDASRIVTGAATEKNITV 656

Query: 670 --KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
              V+ +    S  AD++ L QI   +L+NA+ F+    TV LK AR  GD + F V + 
Sbjct: 657 TTDVVEN---VSVHADKRALKQILLNLLANAVKFTPDNGTVTLK-ARPRGDKLHFEVIDT 712

Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E   + +   FV   N      +G GLGL+I  S + LHGG + I S  +  TT+
Sbjct: 713 GIGISERDIERLAQPFVQVENQFTKTHQGSGLGLAIARSLVELHGGALVIKSEVKKGTTV 772

Query: 785 NCRIPSKE 792
           +  +P  E
Sbjct: 773 SFTLPLAE 780


>gi|21112215|gb|AAM40473.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574704|gb|AAY50114.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 304

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 56  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 115

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS+  L  +V+D+LDLA ++AG + ++     L DL   ++         N   +     
Sbjct: 116 ASTRELSEMVDDLLDLAKIEAGRVTISPGWFDLMDLFAALRGMFRPLTDANRTTLIFEDP 175

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SNA+ F+ +G   +    + +    FSV++ G  IP ++
Sbjct: 176 PVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLQGDTHVRFSVQDTGIGIPAEL 235

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             ++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 236 HDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGTVGINS 279


>gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1431

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + IK+ F+  +S+ELRSPL  I+G++ LL+  KL    +KQ+  V  I  ++ + + L+ 
Sbjct: 1060 NRIKDEFLAVLSHELRSPLNPILGWSRLLQNGKLDEAKAKQA--VNIIERNAKLQVELIE 1117

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            D+LD++ +  G + L  S I L  ++    +++      N+IRI+V  DG++G    D  
Sbjct: 1118 DLLDISRILQGKLSLTSSPINLASVIKGAIETVRLAAEANSIRIEVNLDGEIGLVSGDST 1177

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            RL Q+   +LSNA+ F+  G  V ++  +       SV + G  I  D    VF+ F   
Sbjct: 1178 RLQQVMWNLLSNAVKFTPTGGLVEIRLEQVGNQAQISVSDTGKGISPDFIPYVFDYFRQA 1237

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                 R+  G+GLGL+IV   + LHGG +   S  EG+  T   ++P
Sbjct: 1238 DSATTRKFGGLGLGLAIVRHLVELHGGTIHAESQGEGMGATFTLKLP 1284



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 5/235 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ E L + D  K +F  +VS+E R+PLT ++   + L T+    L+ +Q Q +  I  +
Sbjct: 319 KRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLSPLEELLTAD--DLSQEQRQEMTLIHRN 376

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL LVN +LD + ++AG ++  Y    L+    E+     + + +  ++  V  +  
Sbjct: 377 GLRLLKLVNTLLDFSRIEAGRVQAVYEPTDLSTFTAELASIFRSAIEQAGLQFSVTCEPL 436

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 DRQ   +I   +LSNA  F+  G+ + L   +       +V + G  IP+    
Sbjct: 437 PELVYVDRQMWEKIILNLLSNAFKFTFSGA-IALTLRQVQHQVEITVTDTGIGIPQAELP 495

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF  V  A    + G G+GL++V+  + LHGG V + S +   TT    +P
Sbjct: 496 HLFERFHRVEGARGRTQEGSGIGLALVQELVRLHGGQVQVDSLEGLGTTFTITVP 550


>gi|39935007|ref|NP_947283.1| sensor histidine kinase pleC [Rhodopseudomonas palustris CGA009]
 gi|39648858|emb|CAE27379.1| sensor histidine kinase, possible pleC [Rhodopseudomonas palustris
           CGA009]
          Length = 779

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-Y 609
           A +   EK  A  +A++ K+ F+ ++S+ELR+PL  IIGF++++ +   G+L S++ Q Y
Sbjct: 530 ARKYADEKRRA-EEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEY 588

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S   LL ++NDILD++ ++AG M+L    + L   + E  + +A +    ++ +
Sbjct: 589 CHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLEL 648

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +   + ++   VADR+ + QI   +LSNA+ F+     V ++     G  +  + + G  
Sbjct: 649 RSELNDQI-PIVADRRAIKQILINLLSNAVKFTPDAGRVTVRGHLAGGSIVLMIADTGIG 707

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP    + +   F  V +       G GLGL+I +S +NLHGG + + S+    T +   
Sbjct: 708 IPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVS 767

Query: 788 IP 789
           +P
Sbjct: 768 LP 769


>gi|167623839|ref|YP_001674133.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167353861|gb|ABZ76474.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 818

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 162/317 (51%), Gaps = 34/317 (10%)

Query: 484 AATCSRYYNESDGWD----------------LFAAIITSFDDERKSLQGTLELLSDSVLE 527
           A+   R Y+ES G+                 LF  I    D   KS+ G +  ++ S++E
Sbjct: 238 ASMKRRGYSESLGYHGTLRQNVHSVERSLETLFNTIPLKVD---KSVSGLV--ITQSIVE 292

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++ L        F ++T   R E+ L    E   +A+  K+SF+ ++S+E+R+PL  I
Sbjct: 293 ILLVLLIVGILYYIFYSIT---RMEQGLIFAREKEEQANSAKSSFLANMSHEIRTPLNGI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T++L  SKL ++   Q  Y+  I++SS  LL L+NDILDL+ +++G +++   T  +
Sbjct: 350 IGMTEILTDSKLTAI---QKDYLATINSSSQTLLMLINDILDLSKIESGHLEICPHTCNI 406

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            +++ +    IA K  + +I +++  D  +  +V AD Q+L Q+   + SNA+ F+  GS
Sbjct: 407 KEVIYDTVALIAPKAQQRSIEMRITIDQNIPCYVRADEQKLRQVLMNLASNAVKFTHSGS 466

Query: 707 TVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSI 760
               L+   +  D I   FSVK+ G  I E+    VF  F         +  G GLGLSI
Sbjct: 467 VSFKLQLEVETTDTICILFSVKDTGIGIDENKHMQVFEEFQQEERNTSVEYGGTGLGLSI 526

Query: 761 VESFINLHGGHVSISSS 777
               + + GG ++I+SS
Sbjct: 527 STKLVRMMGGEIAINSS 543


>gi|91772450|ref|YP_565142.1| PAS sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711465|gb|ABE51392.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 436

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 133/248 (53%), Gaps = 2/248 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE +L +  + L  A  IK++F+ +VS+ELR+PL +IIGF+ +LK +   +L 
Sbjct: 183 DISDRKMAEISLLKSKDILENASRIKSNFIGNVSHELRTPLNSIIGFSHILKENNENNLT 242

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y   +  S   LL L+ND+LD++ +++G  +       LN L++EV +S+A   +
Sbjct: 243 ENQLKYCSNVEISGKHLLALINDVLDISKIESGEARFEPELFKLNLLIHEVVESLAPFAN 302

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + +I +++    K     ADR ++ QI   +L+N++ F+     ++L    D  +   S+
Sbjct: 303 KKSIELEMTLKHKNIGVHADRTKIKQILLNLLNNSIKFTPACGKIMLTVGVDEENINISI 362

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +NG  I +     +F  F         Q  G GLGLSI + ++ +H G + + S     
Sbjct: 363 SDNGIGIAKYNYDRIFEPFNQADMLLTKQYEGTGLGLSIAKKYVEMHKGQIWVKSELGVG 422

Query: 782 TTINCRIP 789
           TT N +IP
Sbjct: 423 TTFNIKIP 430


>gi|260461547|ref|ZP_05809794.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259032617|gb|EEW33881.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 1255

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 11/257 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E  L E  +    AD  K+ F+ ++S+E+R+P+  ++G  +LL  S   +L+
Sbjct: 679 DITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS---NLD 735

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ  + + I  S   LL ++NDILD + +DAG + L+ +   L + + +V   ++T+  
Sbjct: 736 PKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAK 795

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR--DNGDF 719
           E ++ + V  + +LGS F+ D  R+ QI + +L NA+ F+ +G  ++ +   R       
Sbjct: 796 EKDLELIVRIEPRLGSLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERMPTGTKL 855

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  IPE+  K VF +F        RR  G GLGL+I    + L GG + + S+
Sbjct: 856 TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGKIGVESA 915

Query: 778 DEGVTT--INCRIPSKE 792
           +   +T      +PS E
Sbjct: 916 EGKGSTFWFEVTLPSAE 932



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 18/142 (12%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           FE +  + D +    +LV ++   +D +  GV V G D R ++ N AF   W+ + NR  
Sbjct: 157 FEEMAPKQDEDVSSQSLVNLR-TMVDSMPIGVVVLGADMRAEVINSAFHDFWRIDPNRAG 215

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE--------RKSLQGTLELLSDS--V 525
            G+  R +          S   D F A  T++           R  + G+ +L  +    
Sbjct: 216 IGSSFREL-------MEASRAIDPFGADETAWQRHVAEREAEIRAGVAGSRQLPHNDGRT 268

Query: 526 LEYSIIPLPNAQTMLTFVNVTD 547
           L  S+  L   + ++++V+VTD
Sbjct: 269 LVASLASLAGGKRLISYVDVTD 290


>gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 1427

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 183/396 (46%), Gaps = 67/396 (16%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW-------------- 467
           Q++ E +  +LV  + +       GV V G D +IK  NP F  +               
Sbjct: 633 QIEDELRMMSLVAAETDN------GVVVTGLDQKIKWVNPGFTDITGYDFDEVIGRKPGD 686

Query: 468 -----KTEENRLSP-GTHIR---NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
                KTE++ +S  GT IR    +A   + Y    + + L   I+   D+         
Sbjct: 687 FLHGPKTEQDAVSCLGTAIRKQERVATDITNYGKNGEPYILHIEIMPIRDE--------- 737

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              S  V+E+  I L +        NVT+  RA++ + E  EA   A+  K+SF+  +S+
Sbjct: 738 ---SGEVVEF--IALES--------NVTEQRRADKEIKEAKEAAELANRAKSSFLAAMSH 784

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  ++G  DLL+ ++L    S Q   V     SS  L+ +++D+LD + ++AG +
Sbjct: 785 EIRTPLNGVVGTIDLLEHTRL---ESNQRDMVRTARDSSLTLMGIIDDVLDFSKIEAGKL 841

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L+ + + L  ++    +S+     +NNI + V  +  +   + D  RL QI   +  NA
Sbjct: 842 ELDDAPVSLQRVVEGCVESMQPLAAKNNIELLVFCEPAIPEVMGDLVRLRQILLNLTGNA 901

Query: 699 MDFSS-----KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           + FS+     +   V + AA ++ +        SVK+NG  +  D  + +F  FV     
Sbjct: 902 IKFSAGLKSGRQGRVEVSAALESVEEQDVKIRLSVKDNGIGMSADAQEKLFRPFVQAESS 961

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGV 781
             RR  G GLGL+I    + + GGH+ + S  D+G 
Sbjct: 962 TTRRFGGTGLGLAISRRLVEMMGGHIEVESRLDQGA 997


>gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora
           sp. 8437]
          Length = 585

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 4/231 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A+R+ ++++  FV +VS+EL++P+T++ GF + L        + ++ +++E I A S  L
Sbjct: 356 AIRRLEKMRTEFVANVSHELKTPVTSLRGFAETLLDGAAEDPDMRK-EFLEIIQAESLRL 414

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+LDL+ +++  M L+  TI + +LL    +++  +M +  +  +V S+ +    
Sbjct: 415 ERLIADLLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQMRKRKLSFRVKSEEEFPVQ 474

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V D  R  QI   +LSNAM ++  G  VIL A R   D+   V + G  IP +    +F 
Sbjct: 475 V-DPDRFSQILLNLLSNAMTYTPAGGEVILSAGRGETDWWIRVADTGIGIPGEDLPRIFE 533

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A   +  G GLGL+IV+  +  H G + ++S     T I    P
Sbjct: 534 RFYRVDKARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAGKGTEITLTFP 584


>gi|299537174|ref|ZP_07050477.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
 gi|298727415|gb|EFI67987.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
          Length = 914

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 170/356 (47%), Gaps = 24/356 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWK----TEENRLSPGTHIRNIAATCSRYYNESD 495
           ID+++EG+ +    G   L N A   +      T E  +     +++    CS   +E  
Sbjct: 459 IDNVNEGIQLVSVTGDTILINRALCGIVNFFNLTTETSIPKEDWLQHFQK-CSAQPDELI 517

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
            + L A+I+ SF+D RK              E+ I     A  +        ++   R +
Sbjct: 518 EF-LEASIMESFEDTRKYRYCM-------TAEHEIFVEVYATCLFDGQEKVGTIFVHRDI 569

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T + E     D++K+  V  VS+ELR+PL++++GFT+LL T  +     +Q++Y++ I  
Sbjct: 570 TREYEV----DQMKSELVSTVSHELRTPLSSVLGFTELLLTKNIKP--ERQNKYIDTIHR 623

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L NL+ND LDL  +++G  + N  T+ LN++  E+   +    HE    + +I   
Sbjct: 624 EAVRLTNLINDFLDLQRMESGKQQYNMETLQLNEIAFEI---VNRFRHEQKHNVHLIDKA 680

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +     AD+ RL+Q+F  ++ NA+ FS +G  V +     N     S+K+ G  I +   
Sbjct: 681 REVYVNADQDRLVQLFINLIGNAIKFSPQGGDVEILLENKNNSIQVSIKDEGIGISKQDI 740

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F +F  + N+ R +  G GLGLSI    I  H G + I S +   TT+   +P
Sbjct: 741 AQLFQKFKRIDNSLRRKIGGTGLGLSICREIILKHEGEIWIESEEGQGTTVYFTLP 796


>gi|158339144|ref|YP_001520321.1| sensory transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309385|gb|ABW31002.1| sensory transduction histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 551

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 553 RALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           R L+E+    N AL +A  +K+ F+  +S+ELR+PLT IIG  ++L+    GSLN KQ +
Sbjct: 168 RQLSEQLVIVNAALERAAGLKDEFLSTMSHELRTPLTAIIGLAEVLREEVYGSLNPKQLK 227

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  S   LL  +ND++DL+ +++G + L    + ++ L+      +  +  + NI 
Sbjct: 228 SVCTIEESGETLLTQLNDLIDLSKIESGNLVLERRRVSISALVESCLAMVRPQAQKQNIT 287

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +       L     D  RL Q+   ++SNA+ F+ +G  V ++A  D       V + G 
Sbjct: 288 LSHHIPTDLAEVTGDELRLRQVLQNLISNALKFTPQGGAVSVQATADTEQVQVRVTDTGI 347

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            I      ++F  FV       R   G GLGL++V+  I+LHGG V + S
Sbjct: 348 GIATADLANIFEPFVQLDSSWARPYPGTGLGLTLVQRLIHLHGGTVQVES 397


>gi|283780478|ref|YP_003371233.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283438931|gb|ADB17373.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 636

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 11/265 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L +AQ+ L   N     + ++ L + N  L + + +K  F+ ++S+ELR+PL +IIGF++
Sbjct: 328 LTDAQSELKEANYDLDAKVDQ-LAQLNMRLHEMNRLKGEFLANMSHELRTPLNSIIGFSE 386

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  + + SL  KQ +Y + I  S   LL ++NDILDLA ++AG M +  S   ++ +L+
Sbjct: 387 VL--AGIDSLTDKQKRYAQNIQKSGRSLLEMINDILDLAKLEAGKMDVRLSEFRIDSILS 444

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                + +   + NI + +  +  L +   D+ +L QI + +LSNA+ F+ +G  + + A
Sbjct: 445 AHCDMVRSLTEDKNIDLVLDIENDLPALYQDQAKLQQILTNLLSNAIKFTPEGGRITVGA 504

Query: 713 ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-------RGVGLGLSIVESF 764
             D+  FI   V + G  I +   + +F +F        R        G GLGLSIV+  
Sbjct: 505 KGDSRGFIEMYVSDTGVGIADADKEIIFEKFRQGTAVLGRDNLTREYSGTGLGLSIVKEL 564

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
             L GG VS+ S     +T    IP
Sbjct: 565 CKLLGGEVSVESELGRGSTFRVTIP 589


>gi|300769974|ref|ZP_07079853.1| sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762450|gb|EFK59267.1| sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 542

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 37/305 (12%)

Query: 498 DLFAAIITSFDDERKSL-QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           ++ A ++T+   E K L QG    L+   ++Y   PL    T+    +    V  +  + 
Sbjct: 78  EIIAIMVTAISKEDKYLIQG----LNSGAVDYLYKPLSPEITIAKVKSFMQQVLTQLQIK 133

Query: 557 EKN-----------------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           EKN                 E  RK+ EI   F+ ++S+E+R+P+  I+G T +L++S  
Sbjct: 134 EKNAELEQSKQELIRSKEEAEQARKSKEI---FLANMSHEIRTPINGIMGITQMLRSS-- 188

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L+S+Q  +V  + ++S  LL ++NDILD++ +D+G+MKL +  +V  DL +++ +   
Sbjct: 189 -TLSSEQKDWVNRLDSASHSLLLIINDILDISKIDSGMMKLEFENLVFQDLFDDLNKIFK 247

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
            K    N+  ++  D  L ++V  D  RL QI S  +SN + F+ KG   +   +   +D
Sbjct: 248 IKAANKNLEFEMNIDSDLPTYVKTDSLRLQQILSNFISNGLKFTEKGKVTLSIRILEVKD 307

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
           N  FI FSVK+ G  I  +    +F  F   A  G  +   G GLGL+IV+   +L  G 
Sbjct: 308 NSYFIRFSVKDTGIGIRAESLNKIFLAF-EQADDGITKKFGGTGLGLAIVKRLADLFNGS 366

Query: 772 VSISS 776
           V  +S
Sbjct: 367 VDATS 371


>gi|237719843|ref|ZP_04550324.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451112|gb|EEO56903.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 926

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 137/239 (57%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T +L   
Sbjct: 676 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 732

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 733 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 791

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E    ++++ DG L     ++DR R+ Q+ S  ++NAM F+S+GS  +    +D G+  
Sbjct: 792 KE---EVELVFDGHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 847

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 848 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 901


>gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 1126

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 117/501 (23%), Positives = 227/501 (45%), Gaps = 40/501 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-------AFLATNPSNDELLEFLRSAN 363
           IL +L + + I D +  + + N  F  +WE+          F+     N EL  +     
Sbjct: 328 ILRSLPIGVLILDNDHRILYVNDEFYSIWELPREDGFDGRPFIDVIRRNHELGRY--DGT 385

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           + PE+L    +++++F   +  E  +  W             SN R   +  + +++   
Sbjct: 386 RTPEEL--YAFRKHLFEAAEP-EPIEVGWAGGKSVIFDSRRISNDR--ILLTYADISAVR 440

Query: 424 DLETK-YNTLVKVQ--GETIDH----LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + E + + T   ++  GE +      +S+G+A+   DG IK+SN A   + +   + +  
Sbjct: 441 EREKEIHETRAALERVGEMMRDATHAMSQGLAIV-QDGIIKMSNEAMADILQIPPHYIEA 499

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDD---ERKSLQGTLELLSDSVLEYSIIPL 533
           G     +   C+      D  D  A I+  +      R+ +     +  +  +       
Sbjct: 500 GQGWLGMFEFCA---ARGDFHDAAADILEGWRANIAARQPISTVFHVGGERWVNMDATVS 556

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +  F +VT+    E  L E       AD  K+ F+ ++S+E+R+P+  ++G  +L
Sbjct: 557 TGQHWVALFTDVTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAEL 616

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +   +L+++Q  +++ I  S   LL ++NDILD + +DAG MKL  +   + + + +
Sbjct: 617 LAKT---NLDTRQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVED 673

Query: 654 VKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V   +++   E NI + V +   L  + + D  R  QI + ++ NA+ F+ +G   +   
Sbjct: 674 VATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVG 733

Query: 713 ARD--NGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                 G+ + +++  + G  IPE+  +SVF++F        RR  G GLGL+I    ++
Sbjct: 734 FETVAGGEIMANIRIEDTGIGIPEEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVD 793

Query: 767 LHGGHVSISSS-DEG-VTTIN 785
           L GG++ + S   EG V T+N
Sbjct: 794 LFGGYIKVESQWGEGSVFTVN 814


>gi|189467204|ref|ZP_03015989.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM
           17393]
 gi|189435468|gb|EDV04453.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM
           17393]
          Length = 720

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 135/242 (55%), Gaps = 13/242 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+   AER L    E   +++ +K++F+ ++S+E+R+PL  IIGF+ +L  ++      
Sbjct: 477 ITERKVAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILTMTED---EE 533

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++ ILL L+ND+LDL+ ++AG++ L YS   LN +L  +K  + +++  
Sbjct: 534 EKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFALNGVLMTLKGVVESRLQS 593

Query: 665 NNIRIKVISDGKLGSF---VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +   +++I +  +  +    +++ RL Q+    L+NA  F+S GS       R+  +  +
Sbjct: 594 S---VELIFEPGMPDYYVVCSEKNRLQQLVLNFLTNACKFTSTGSIRYGYEVREK-EIYY 649

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
            V + G+ IPED    +F RF+       ++G GLGL I +  I   GG + ++S   EG
Sbjct: 650 YVTDTGTGIPEDKLHLIFERFIK--LDSFKQGTGLGLPICQLIIQNMGGEIGVNSKLGEG 707

Query: 781 VT 782
            T
Sbjct: 708 ST 709


>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1117

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 10/246 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F ++T     ER L E  EA    +  K+ F+  +S+E+R+P+  +IG T LL  ++
Sbjct: 450 VLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTR 509

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L   + +Q  + E I  S   LL ++NDILD + ++AG + L+Y+   L  L+  V   +
Sbjct: 510 L---SEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDIL 566

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A + H   I I  + D +L   V +D  RL Q+   +  NA+ F+ KG   I  +  D  
Sbjct: 567 APRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGP 626

Query: 718 DFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           D      F V++ G  IP +    +F+ F        RR  G GLGL+I      L GG 
Sbjct: 627 DAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGE 686

Query: 772 VSISSS 777
           V + S+
Sbjct: 687 VGVESA 692


>gi|75909218|ref|YP_323514.1| histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75702943|gb|ABA22619.1| histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 603

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+ L + +++KN F+ + S+E+R+PL++IIGFT LL          +  +Y+  I +S  
Sbjct: 223 NQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDPTRERHHEYLNIIQSSGK 282

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+NDILDL+ ++A  +++ +  + + +L   V   I  K     +++ +  D  + 
Sbjct: 283 HLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAANKGVKLSLELDPHIK 342

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +FVAD  RL Q+   +L NA+ F+++G TV LK  +      F+V + GS I  +    +
Sbjct: 343 TFVADPLRLKQMLLNLLFNALKFTNQG-TVGLKVTQRESFIHFTVWDTGSGISPENLALL 401

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
           F  +  + N+   Q  G GLGL +      +H G V + S  D G
Sbjct: 402 FQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVESQVDHG 446


>gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
 gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
          Length = 877

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 13/279 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD-------EIKNSFVQHVSY 578
           L+  ++PL   + +    +VTD V AE+AL ++ E L  A         +K+ F+ H+S+
Sbjct: 474 LKAHLVPLGPEELLGVVEDVTDLVEAEKALWKRTEELSAASADLTRTARMKDEFLAHMSH 533

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  ++   + L    LG+LN  Q + ++ I       L+L+ DILDL+ V+AG +
Sbjct: 534 ELRTPLGAMLNLAEALAEESLGTLNEAQRRILQSIEECGRHFLSLIGDILDLSKVEAGRL 593

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L  S + +  L      +++    +  I + + +   L     D +R+ QI   +LSNA
Sbjct: 594 DLVRSPLDVASLARGALTALSRDFEKKGIAVSLEAPEDLPRADGDPKRVRQILVNLLSNA 653

Query: 699 MDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR--RG 753
           + F+ +G  V ++  RD        +V + G  I PED+ + +F  FV       R   G
Sbjct: 654 VKFTPQGGRVGVEVLRDPLRPAVAVTVWDRGIGISPEDLDR-LFVPFVQGEGGLSRSFSG 712

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGLS+V   + LHGG + + S+    +    R+P  E
Sbjct: 713 TGLGLSLVLRMVELHGGGLQVESAPGEGSRFTVRLPLAE 751


>gi|1825465|gb|AAD12184.1| utilizing regulatory protein tutC [Thauera aromatica]
          Length = 979

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 137/282 (48%), Gaps = 21/282 (7%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEAL-------RKADEIKNSF 572
           V++YSI+P+ +    + F+     N+TD   AE  L  KNE L       R+ DE KN F
Sbjct: 125 VVDYSILPIRDCNGKVVFLLPEGRNITDKKLAEAELARKNEELQHLLEKIRQLDEAKNEF 184

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
             ++S+ELR+PL+ I+G  + L     G  +  Q   ++ I  ++  LL  VND+LDLA 
Sbjct: 185 FANLSHELRTPLSLILGSVESLLADS-GDYSGVQRVDLDVIQRNAITLLKYVNDLLDLAK 243

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + A  ++L+YS +   DL    +   A    + E      VI          D ++  +I
Sbjct: 244 LQAEKLQLHYSRV---DLAAVTRMICAHFEALAEYKCLSYVIDAPAFMEAEVDVEKYERI 300

Query: 691 FSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
              +LSNA  FS  G  +    +A   G  + S++++G  IP D    +F RF       
Sbjct: 301 VLNLLSNAFKFSPDGGRIRCSLSATGTGRILLSIQDSGPGIPADQQSEIFGRFRQGGDIK 360

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            R+  G GLGL+IV+ F+ LHGG V +S +  G       +P
Sbjct: 361 SRQFGGTGLGLTIVKDFVCLHGGVVVVSDAPGGGALFQIELP 402



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 156/363 (42%), Gaps = 25/363 (6%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           + G+ +   DG I  +N AF+ +    E+ L     I ++     R    S   +L +  
Sbjct: 620 AAGIVLTNLDGLILSANQAFQKMVGYAEDELRV-IEISDLVPEHDREKIRSRVSNLISGR 678

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLT--FVNVTDSVRAERALTEKNE 560
           +  +  +R+  +    ++  +V   S+IP L N   M+   F ++T+ ++ E  L    E
Sbjct: 679 VDDYQVQRQCRRKDGRMMWANV-RASLIPGLANQSPMVVRIFDDITEKIQTEAELARARE 737

Query: 561 ALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            L +   +         +++EL  PL  I+        + L  L S+    +E + A   
Sbjct: 738 KLTRVMRVTAMGELAASIAHELNQPLAAIVTNGH----ASLRWLGSEPCNLLEAVEAVRR 793

Query: 619 ILLNLVNDILDLATVDAGIMKLN---YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           I+ +  N   ++     G ++      S + +  ++ +V   ++     + I ++  + G
Sbjct: 794 IIHD-ANRASEIIKRIRGFLQRGEGRRSAVDIFQVVADVAAIVSDMARSHCIDMRYQAVG 852

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDF-----SSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +L   +AD+ +L Q+   +  N ++      S +G   I     D      SV ++G  +
Sbjct: 853 QLSLVIADKVQLQQVILNLCINGIESIVGGNSERGELSITVTQSDKRFLTVSVHDSGPGL 912

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTINCRIP 789
                ++VF+ F ++    +  G+G+GL+I  S I  HGG + + S S EG  T    +P
Sbjct: 913 APGEAENVFDAFYTS----KVEGLGMGLAISRSIIEAHGGRLDVLSPSTEGGCTFCFTLP 968

Query: 790 SKE 792
           ++E
Sbjct: 969 TEE 971


>gi|197105542|ref|YP_002130919.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum
            HLK1]
 gi|196478962|gb|ACG78490.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum
            HLK1]
          Length = 1952

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 18/257 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A+ AL EK E L    + K+ F+ ++S+ELR+PL +++  + LL  +  G+L+ KQ ++
Sbjct: 1247 QAKLALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKLLADNAQGNLSDKQVEF 1306

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  +   LL L+NDILDL+ +++G + L+   +    L ++V ++ A    +  +  
Sbjct: 1307 ARNIHDAGADLLGLINDILDLSKIESGTVTLDIGEMAFAGLKDQVDRTFAQIAADKKLEF 1366

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
            +V  DG L  S   D +RL QI   +LSNA  F+ KG  V LK AR +G           
Sbjct: 1367 QVELDGALPRSMYTDDKRLQQIIKNLLSNAFKFTEKGH-VKLKIARAHGGWSSTNDHLNT 1425

Query: 719  ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  FSV++ G  IPED  + +F  F        R+  G GLGLSI      L GG +
Sbjct: 1426 AGQVLAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREITRLLGGEL 1485

Query: 773  SISSSDEGVTTINCRIP 789
             + S     +T    +P
Sbjct: 1486 KVESKPGKGSTFTLYLP 1502


>gi|192290539|ref|YP_001991144.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192284288|gb|ACF00669.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 769

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-Y 609
           A +   EK  A  +A++ K+ F+ ++S+ELR+PL  IIGF++++ +   G+L S++ Q Y
Sbjct: 520 ARKYADEKRRA-EEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEY 578

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S   LL ++NDILD++ ++AG M+L    + L   + E  + +A +    ++ +
Sbjct: 579 CHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLEL 638

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +   + ++   VADR+ + QI   +LSNA+ F+     V ++     G  +  + + G  
Sbjct: 639 RSELNDQI-PIVADRRAIKQILINLLSNAVKFTPDAGRVTVRGHVAGGSIVLMIADTGIG 697

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP    + +   F  V +       G GLGL+I +S +NLHGG + + S+    T +   
Sbjct: 698 IPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVS 757

Query: 788 IP 789
           +P
Sbjct: 758 LP 759


>gi|15889187|ref|NP_354868.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15157006|gb|AAK87653.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 511

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 134/244 (54%), Gaps = 15/244 (6%)

Query: 559 NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--- 612
           +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++ +  LG LN+    Y EY   
Sbjct: 249 DEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSSEVLGPLNNPL--YKEYSGD 306

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+L+N+ILDL+ ++AG   LN  +I + ++  +    I  +    NIRI   
Sbjct: 307 IHRSGQHLLDLINEILDLSRIEAGRYDLNEESISMLEIAEDCIGMIQLRARAKNIRISQQ 366

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSI 730
            +  L    AD + + Q+   +LSNA+ F+ +G  +++KA      G ++ S+++NG  I
Sbjct: 367 FEASLPQVWADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYV-SIRDNGPGI 425

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCR 787
           PED    V + F   S A +   +G GLGL IV++ +  H G   + S   EG   I   
Sbjct: 426 PEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLREGTEGIAI- 484

Query: 788 IPSK 791
           +P+K
Sbjct: 485 LPAK 488


>gi|265763357|ref|ZP_06091925.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255965|gb|EEZ27311.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 899

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E    +D++K++F+ ++S+E+R+PL  I+GF+ ++  S       ++ +Y E 
Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + A++  LL L+N+ILDL+ +++GI++  Y  + L+ L  E+  +   +  +  + ++  
Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFD 611

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S  +  S  +D+ R+ Q+FS ++ NA  F+++GS V     ++    +F VK+ G  I  
Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    VF RF    +  Q  G GLGLSI ++ I   GG +++SS     TT    +P
Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|253565261|ref|ZP_04842716.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945540|gb|EES85947.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 899

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E    +D++K++F+ ++S+E+R+PL  I+GF+ ++  S       ++ +Y E 
Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + A++  LL L+N+ILDL+ +++GI++  Y  + L+ L  E+  +   +  +  + ++  
Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFD 611

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S  +  S  +D+ R+ Q+FS ++ NA  F+++GS V     ++    +F VK+ G  I  
Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    VF RF    +  Q  G GLGLSI ++ I   GG +++SS     TT    +P
Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|53713284|ref|YP_099276.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216149|dbj|BAD48742.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 899

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E    +D++K++F+ ++S+E+R+PL  I+GF+ ++  S       ++ +Y E 
Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + A++  LL L+N+ILDL+ +++GI++  Y  + L+ L  E+  +   +  +  + ++  
Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFD 611

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S  +  S  +D+ R+ Q+FS ++ NA  F+++GS V     ++    +F VK+ G  I  
Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    VF RF    +  Q  G GLGLSI ++ I   GG +++SS     TT    +P
Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|307945357|ref|ZP_07660693.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4]
 gi|307771230|gb|EFO30455.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4]
          Length = 512

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 559 NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYIS 614
           +E+ R+A+     K+ F+  +S+ELR+PL  I+GF++++K   LG + ++Q + Y   I 
Sbjct: 254 DESRRRAEAANMAKSRFLATMSHELRTPLNAILGFSEVMKDEVLGPMQNEQYKSYAADIH 313

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LLNL+N+ILDL+ ++AG  +L    I + +++ E    +  +  + NI +    +
Sbjct: 314 GSGQHLLNLINEILDLSRIEAGRHELQEEEISVTEIVEECLNMMQIRADDRNITLHNHLE 373

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPED 733
            ++    AD + + Q+   +LSNA+ F+  G  V +     +G   + SVK+NG  IPED
Sbjct: 374 KEMPKVWADERAVRQVVLNLLSNAVKFTPIGGDVRITVGWTSGGGQYVSVKDNGPGIPED 433

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V   F   S A +   +G GLGLSIV++ +N+HGG  ++ S
Sbjct: 434 EIPVVMEAFGQGSMAIKSAEQGTGLGLSIVQALVNMHGGKFTLRS 478


>gi|301163089|emb|CBW22638.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 892

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 7/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E    +D++K++F+ ++S+E+R+PL  I+GF+ ++  S       ++ +Y E 
Sbjct: 496 RELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAE---ERREYYEI 552

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + A++  LL L+N+ILDL+ +++GI++  Y  + L+ L  E+  +   +  +  + ++  
Sbjct: 553 VDANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFD 611

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S  +  S  +D+ R+ Q+FS ++ NA  F+++GS V     ++    +F VK+ G  I  
Sbjct: 612 SPDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEP 670

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    VF RF    +  Q  G GLGLSI ++ I   GG +++SS     TT    +P
Sbjct: 671 EKLGRVFQRFAKLNNFAQ--GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 657

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 4/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L +A  +K+ F+ ++S+ELR+PL  I+G  ++L     G +N +Q + V  +S
Sbjct: 255 LMVANAELERASRLKDEFLANMSHELRTPLNTILGRAEILAEGIYGPINQEQHEAVRSMS 314

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+NDILDL+ ++AG ++L  S + +  L     + +A    +  IR+     
Sbjct: 315 ESGRHLLALINDILDLSKIEAGKLELQLSLVDMVTLCEASIRMVAQSALKKEIRLHSSIS 374

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPE 732
            ++    AD +RL QI   +LSNA+ F+  G  V L+     D     F+V + G  I E
Sbjct: 375 PQVDVIYADERRLKQILVNLLSNAVKFTPAGGQVELEVQTDPDQQSVSFTVSDTGIGIAE 434

Query: 733 DMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  FV        Q  G GLGL +V+     HGG V++ S +   ++   R+P
Sbjct: 435 ADMARLFQPFVQIDAGLTRQHDGTGLGLVLVQRLTEAHGGSVAVQSQEGLGSSFTVRLP 493


>gi|126658520|ref|ZP_01729668.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126620262|gb|EAZ90983.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 400

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 5/237 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+ L+   + K+ ++ HVS+ELR+PL  I+GF+ +L+    G+LN KQ QYV  I  S  
Sbjct: 163 NQKLQSYSDHKSDYLSHVSHELRTPLAGILGFSKMLREEIYGTLNDKQKQYVNGIRISGE 222

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL LVND LDL+ ++A   +L   T+ + D+       +  K  E N+ + +    ++ 
Sbjct: 223 HLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISMVQPKADEQNLNLLLKLSDQVD 282

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D++++ QI   +LSNA+ F+ KGS V L+  + +    F V + G  I E+  + +
Sbjct: 283 FCKVDQRKIKQILINLLSNAIKFTEKGS-VTLEVDKIDCLLTFCVVDTGIGIKEEDQQKL 341

Query: 739 FNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F  F    SN  R + +G GLGL++ +    LH G +++ S     +     +P +E
Sbjct: 342 FQPFQQIHSNLSR-KHKGTGLGLALSKKLAQLHQGDLTLQSEYGKGSCFTLELPLRE 397


>gi|187920088|ref|YP_001889119.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187718526|gb|ACD19749.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 1195

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 126/234 (53%), Gaps = 3/234 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +D +RA+  L      L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +
Sbjct: 466 SDLLRAQDDLAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEE 525

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ ++  L  ++++        
Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVTVELETVSIDATLQALEETFKPLAGAR 585

Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           ++ +      G   +F+ D QR+ QI   +LSNA+ F+ +G   +  A  + G   F V+
Sbjct: 586 HLSLAFDRLPGTPDTFITDGQRVTQILRNLLSNAVKFTERGEVALSVAPAEGGMLRFDVR 645

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++G  I  D    +F  F     +   Q  G GLGLSI   F  L GG ++++S
Sbjct: 646 DSGIGIAADKLDMIFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVAS 699


>gi|295690558|ref|YP_003594251.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
 gi|295432461|gb|ADG11633.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
          Length = 574

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 132/256 (51%), Gaps = 11/256 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            V V   V AER      E  R   E     +  F+ ++S+ELR+PL  I+GF+D+++  
Sbjct: 285 LVGVLRDVTAERDRAAALEQARADAEGLAAGRARFLANMSHELRTPLNAIMGFSDIMRAR 344

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G L+ + ++Y E I  S   LL+L+ND+LD++ ++A   +L        + +    + 
Sbjct: 345 MFGPLSDRYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAIQAAMRL 404

Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +  +     ++++ V+  G+L    ADR+ L QI   ++SNA+ F+ +G  V +     +
Sbjct: 405 LRVQSDSAGVQLRGVLPPGEL-EVDADRRALKQIVLNLVSNALKFTPRGGQVTVTLDGYD 463

Query: 717 GDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           G     V + G  I PED+ +    R    A   ++  RG GLGLS+V +F  LHGG ++
Sbjct: 464 GVLEIVVADTGVGISPEDLER--LGRPYEQAGGAEQRARGTGLGLSLVRAFAKLHGGEMA 521

Query: 774 ISSSDEGVTTINCRIP 789
           I S     TT++ R+P
Sbjct: 522 IESRLGAGTTVSVRLP 537


>gi|227538423|ref|ZP_03968472.1| signal transduction histidine kinase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241705|gb|EEI91720.1| signal transduction histidine kinase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 542

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 37/305 (12%)

Query: 498 DLFAAIITSFDDERKSL-QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           ++ A ++T+   E K L QG    L+   ++Y   PL    T+    +    V  +  + 
Sbjct: 78  EIIAIMVTAISKEDKYLIQG----LNSGAVDYLYKPLSPEITIAKVKSFMQQVLTQLQIK 133

Query: 557 EKN-----------------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           EKN                 E  RK+ EI   F+ ++S+E+R+P+  I+G T +L++S  
Sbjct: 134 EKNAELEQSKLELIRSKEEAEQARKSKEI---FLANMSHEIRTPINGIMGITQMLRSS-- 188

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L+S+Q  +V  + ++S  LL ++NDILD++ +D+G+MKL +  +V  DL +++ +   
Sbjct: 189 -TLSSEQKDWVNRLDSASHSLLLIINDILDISKIDSGMMKLEFENLVFQDLFDDLNKIFK 247

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
            K    N+  ++  D  L ++V  D  RL QI S  +SN + F+ KG   +   +   +D
Sbjct: 248 IKAANKNLEFEMNIDSDLPTYVKTDSLRLQQILSNFISNGLKFTEKGKVTLSIRILEVKD 307

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
           N  FI FSVK+ G  I  +    +F  F   A  G  +   G GLGL+IV+   +L  G 
Sbjct: 308 NSYFIRFSVKDTGIGIRAESLNKIFLAF-EQADDGITKKFGGTGLGLAIVKRLADLFNGS 366

Query: 772 VSISS 776
           V  +S
Sbjct: 367 VDATS 371


>gi|77747790|ref|NP_636549.2| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|77761272|ref|YP_244134.2| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 292

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 44  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS+  L  +V+D+LDLA ++AG + ++     L DL   ++         N   +     
Sbjct: 104 ASTRELSEMVDDLLDLAKIEAGRVTISPGWFDLMDLFAALRGMFRPLTDANRTTLIFEDP 163

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SNA+ F+ +G   +    + +    FSV++ G  IP ++
Sbjct: 164 PVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLQGDTHVRFSVQDTGIGIPAEL 223

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             ++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 224 HDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGTVGINS 267


>gi|170079238|ref|YP_001735876.1| PAS domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169886907|gb|ACB00621.1| PAS domain S-box protein [Synechococcus sp. PCC 7002]
          Length = 1430

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 8/239 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            N     +A + L    E    A+  KN F+  +S+ELR+PL  ++GFT +++ S    L+
Sbjct: 1079 NYYQRQQANKQLELAKELAEAANHAKNQFLTSMSHELRTPLNAVLGFTQIMERSP--DLS 1136

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   +Y+  I  S   LL L+NDIL+LA  + G ++LN +   L+DLL+++ Q  A ++ 
Sbjct: 1137 TDHQEYLSIIHRSGKHLLALLNDILNLAKFEKGTLQLNPNLFNLHDLLDDLAQMYALEIQ 1196

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI 720
              NI++ +  D ++  ++ AD+ +L  +   +L+NA+ F+  G     +   A++     
Sbjct: 1197 HKNIQLDIHWDEQVPRYINADQAKLHSVLLHLLNNALKFTDSGCVQLTVKTLAQNPLRLR 1256

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            FSV + G  I E     +F+ FV     G R  +G GLGL++ + F+NL GG + +SS 
Sbjct: 1257 FSVTDTGIGIAETDFTRLFDNFV-KLEAGDRMGQGSGLGLALSQKFVNLMGGEIVVSSQ 1314


>gi|56420003|ref|YP_147321.1| hypothetical protein GK1468 [Geobacillus kaustophilus HTA426]
 gi|56379845|dbj|BAD75753.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 542

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 129/238 (54%), Gaps = 8/238 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+    E+ +    E   KA++ K++ +  +S+E+R+PL  ++GF  LL+     SL
Sbjct: 145 IDITERKMMEQEMLRAKEEAEKANQAKSNLISRMSHEIRTPLNGVLGFAQLLEMDP--SL 202

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q ++V+ I   +  LLNL+N++LDLA ++ G + L Y  +  +D++ E  + +    
Sbjct: 203 KGRQREFVQEILGGARHLLNLINEMLDLARIETGRLPLTYDVVHPDDIIKESIKLVEPLA 262

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           ++ NI I+  S      ++  D  R+ Q+   +L NA+ ++  G TV+++   D    + 
Sbjct: 263 NKKNIDIQARSSFSEQVYLYTDATRVRQVLLNLLDNAIKYNRDGGTVLIEGKYDQEKVVI 322

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            VK+NG  IP++  +++F  F  +   H     G G+GL+ V+  I L GG + + S 
Sbjct: 323 HVKDNGIGIPDEEQENIFEPFYRIKGTHVD---GNGIGLAFVKQIIRLLGGTIEVKSK 377


>gi|172035081|ref|YP_001801582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171696535|gb|ACB49516.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 453

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +N+ L+ +   K+ +  HVS+ELR+PL  I+GF+ +L+    G+LN KQ QYV  I  S 
Sbjct: 201 ENKKLKLSSHNKSDYFSHVSHELRTPLAGILGFSKMLREEIYGTLNEKQKQYVNGIRVSG 260

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVND LDL+ ++A   +L   T+ + D+       +  K +E N+ + +    ++
Sbjct: 261 EHLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISIVQPKANEQNLDLILNLSEQV 320

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D++++ QI   +LSNA+ F+ KGS V L+  +      F V + G  I E+  + 
Sbjct: 321 DFCTVDQRKIKQILINLLSNAIKFTEKGS-VTLQVKKIESLLTFCVIDTGIGIKEEDQQK 379

Query: 738 VFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +F  F    SN +R + +G GLGL++      LH G+++++S
Sbjct: 380 LFQPFQQIHSNLNR-KHKGTGLGLALSRKLAQLHQGNLTLTS 420


>gi|299146842|ref|ZP_07039910.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517333|gb|EFI41214.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 660

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 145/262 (55%), Gaps = 12/262 (4%)

Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579
           V+E    P+ N Q  +    + V D    +  + E  +A  +A   D++K++F+ ++S+E
Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 304

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL  ++      ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 305 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 362 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 421

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG  + +   + +G+    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 422 KYTSKG-MIEMGYEKIDGNIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478

Query: 760 IVESFINLHGGHVSISSS-DEG 780
           I ++ +    G +   S  D+G
Sbjct: 479 ICKAIVEACRGEIGFESEFDKG 500


>gi|9957556|gb|AAG09417.1|AF180147_9 bZIP histidine kinase TobS [Pseudomonas putida]
          Length = 978

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 25/284 (8%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572
            +++S++P+ N +  + ++     N+T+  +AE  L  KN       E +RK D  K+ F
Sbjct: 125 AVDFSLLPICNEEGSIVYLLAEGRNITEKKKAEAMLALKNQELEQSVECIRKLDNAKSDF 184

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
              VS+ELR+PL+ I+G  + +  ++ G  +    Q+ E I  ++  LL  VN +LDLA 
Sbjct: 185 FAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWKQF-EVIQRNAMTLLKQVNTLLDLAK 243

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA--DRQRLLQ 689
           +DA  M L+Y    L+ L   +  +      + +I      D KL    VA  D ++  +
Sbjct: 244 MDARQMGLSYRRANLSQLTRTISSNFEGIAQQKSITF----DTKLPVQMVAEVDCEKYER 299

Query: 690 IFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           I   +LSNA  F+  G  +   L  +R N   + +V ++G  IP  + K +F RF   + 
Sbjct: 300 IILNLLSNAFKFTPDGGLIRCCLSLSRPNYALV-TVSDSGPGIPPALRKEIFERFHQLSQ 358

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GQ+  RG GLGLSIV+ F+ LH G +S+S +  G      ++P
Sbjct: 359 EGQQATRGTGLGLSIVKEFVELHRGTISVSDAPGGGALFQVKLP 402



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           I L  L+ +    +      N++ + V++D +L     D  ++ Q+   +  NA++  S+
Sbjct: 825 IDLKALVTDTSLILKAPSQNNSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQ 884

Query: 705 GSTVILK-----AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
                 +     +  D GD  + SVK+ G  I E     +FN F +     ++ G+G+GL
Sbjct: 885 ADCETRQLTLSFSGNDTGDALVISVKDTGPGISERQMAQLFNAFYTT----KKEGLGMGL 940

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I  +   +H G + +     G       IP+++
Sbjct: 941 AICLTITEVHNGKIWVECPPAGGACFLVSIPARQ 974


>gi|83593741|ref|YP_427493.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83576655|gb|ABC23206.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 1301

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 5/234 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ D+IK  F  +VS+ELR+PLT I+G   +    +  +L   + + ++ ++ ++ +
Sbjct: 206 EKTRELDDIKTQFFANVSHELRTPLTLILG--PVTSRQEDPTLAPAEKRVLDMVARNARL 263

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL  VND+LD+A ++AG M++ Y    +  L         +   E  I   + +   L +
Sbjct: 264 LLRHVNDLLDIAKLEAGQMRMQYVRTDVTRLCRFALSHFDSLAEERAIAFTLEAPAVLWA 323

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D ++  ++   +LSNA  F+     + +       D I  V +NG  IPE M  +VF
Sbjct: 324 EI-DPEKFRRVLLNLLSNAFKFTPNQGEITVSLIDRGDDVILRVSDNGPGIPESMWTAVF 382

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF        RR  G GLGL+IV  F++LHGG VSI  + EG       +P K
Sbjct: 383 ERFRQVDGGSDRRHGGTGLGLAIVREFVDLHGGEVSIGQASEGGAAFTVVLPKK 436


>gi|307298320|ref|ZP_07578124.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916406|gb|EFN46789.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 776

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 142/241 (58%), Gaps = 15/241 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERA   K EA   A+E K+SF+  +S+E+R+PL  I G   LLK +++ SL   QS YV+
Sbjct: 127 ERA---KREA-EDANEFKSSFMARMSHEIRTPLNAITGMAYLLKKTEI-SLT--QSMYVD 179

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +S  +L+++NDILD + ++AG ++L  ++  ++ ++ +V   ++ K+ E  I  ++
Sbjct: 180 RITQASNNMLSIINDILDFSKIEAGKVELEITSFSMDQIIQDVVNIVSYKIEEQGIGFRL 239

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDF--IFSVKNN 726
             D  + + F  D++R+ QI   IL+NA  F+S G  S  +   A++N  +   FSV++ 
Sbjct: 240 SKDPLIPNWFFGDQKRIEQILLNILNNAAKFTSAGEVSLDVRLVAKENEKYHLSFSVRDT 299

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVTT 783
           G  + E+  K++F  F+       RR  G GLGLSIV++ + + GG + + S+  EG T 
Sbjct: 300 GIGMTEEQIKNLFMPFIQGDSTINRRFGGSGLGLSIVKNLVEMMGGKIEVFSTPGEGSTF 359

Query: 784 I 784
           I
Sbjct: 360 I 360


>gi|107022927|ref|YP_621254.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116686830|ref|YP_840077.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
 gi|105893116|gb|ABF76281.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116652545|gb|ABK13184.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
          Length = 768

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 11/249 (4%)

Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +RA+R+L    +A  +AD    +K+  +  VS+ELR+PL  I G+ ++L+ +   +L   
Sbjct: 371 LRAQRSLQGARDARDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTGDHAL--- 427

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q Q ++ I  S+  L  +V DILD +++  G ++L+ + + +  L ++   +  T     
Sbjct: 428 QHQAIDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFSDQVGTFQTAASSA 487

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I ++            D +RL Q+ S ++SNA+ F+  G +V +  ARD G  + +V +
Sbjct: 488 GILLEFDCAASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLARDGGHAVLTVAD 547

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGV 781
            G  I  +    VF+ F    ++    RRG+GLGLSIV     LHGG+V+++S+  D G 
Sbjct: 548 TGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGNVTVASAGRDRG- 606

Query: 782 TTINCRIPS 790
           TT    +P+
Sbjct: 607 TTFTVTLPA 615


>gi|110833303|ref|YP_692162.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
 gi|110646414|emb|CAL15890.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
          Length = 813

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 134/248 (54%), Gaps = 18/248 (7%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ ++E+   L  A   ++ F+  +S+E+R+PL  IIG  D+LK S L   N +Q   + 
Sbjct: 409 EQRVSERTSELNAALNARSEFLAVMSHEIRTPLNGIIGTVDMLKGSPL---NDEQRHNLN 465

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRI 669
            I  S   LLNL+NDILD + ++AG M +  ++  L +LLNE       K  +H N + +
Sbjct: 466 VIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLLNESLTLFQHKAQIHSNALTL 525

Query: 670 KV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFI-FSV 723
            V   +S+  LG    D  RL QI   ++SNA+ F+  G T+ ++A RD  N D++ F V
Sbjct: 526 DVAPNVSERCLG----DPVRLRQILVNLISNAVKFTDNG-TITVRAQRDPANSDYLYFEV 580

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G+ I E+  + +F+ F        RR  G GLGL+I    + + GG + + S  +  
Sbjct: 581 QDSGTGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSKPKQG 640

Query: 782 TTINCRIP 789
           +    R+P
Sbjct: 641 SRFWFRLP 648


>gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 1132

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 137/259 (52%), Gaps = 10/259 (3%)

Query: 540 LTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +T  ++T+  R E++L T KNEAL KA + K+ F+  +S+E+R+P+  I+G  +LLK ++
Sbjct: 725 VTTQDITELRRVEQSLITTKNEAL-KASQAKSEFLAQMSHEIRTPMNAIMGMAELLKETR 783

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+  Q  YV     +  +L++L+NDILDL+ ++AG + +      +  L+ +V+  +
Sbjct: 784 ---LDVDQKYYVTIFCKAGEVLMSLINDILDLSKIEAGEVSIENIPFDMKKLMADVEDMM 840

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD 715
             +  E  +  I  I+ G     + D  +L Q+   ++ N++ F++KG    VI K    
Sbjct: 841 KPRALEKGLNCICEIAPGVSPHLMGDPTKLRQVLINLIGNSIKFTNKGQVRLVIGKNPSK 900

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
               + S+ + G  IPED    +F +F    +   R+  G GLGL+I +S + L GG + 
Sbjct: 901 KDTLLISITDTGIGIPEDRQHMIFQKFSQADNSVTRKYGGTGLGLAISKSLVELMGGQIW 960

Query: 774 ISSSDEGVTTINCRIPSKE 792
             S     TT    IP +E
Sbjct: 961 FKSRPGTGTTFFFTIPYRE 979


>gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 2161

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +AD  K  F+ +VS+ELR+PLT+I G+ DLL  +    LN +Q  Y+  + +++  L+NL
Sbjct: 1917 EADRAKREFISNVSHELRTPLTSIKGYVDLLMLNPKWKLNEEQLSYLSVVKSNTHRLMNL 1976

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            +NDIL++  +D   + L +  I +  +  EV +++  ++    +   +         +AD
Sbjct: 1977 INDILEIGRIDDNKVGLTFKHISIGAIFEEVNKTLRAEIERKRLSFSIEVADHTPPVMAD 2036

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
              RL Q+   + SNA+ ++    +V L+A  +    +   V +NG  I  +  + +F RF
Sbjct: 2037 ETRLTQVVLNLASNAVKYTYPEGSVKLRAGLNPAGLLQVDVIDNGVGISPEQQQHLFRRF 2096

Query: 743  --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                N  R +  G GLGLSI +S++ +HGG + + S     +T +  IP
Sbjct: 2097 YRADNPLRDEAGGTGLGLSIAKSYVEMHGGQMWVESEPGKGSTFSFIIP 2145


>gi|83309666|ref|YP_419930.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944507|dbj|BAE49371.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 755

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 7/247 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAE  L    E    A   K+ F+  +S+ELR+PL  IIGF + + +  LG +  +  +Y
Sbjct: 501 RAEDELRAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPMPERYREY 560

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              ISAS   LL ++ DILDLA ++AG M+L+   + +  +++   + +  +       +
Sbjct: 561 AGDISASGRHLLGIITDILDLAKIEAGRMELDDRPMEIAPVVDVALRLLRDRGAAAG--L 618

Query: 670 KVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
            +ISD    L   +AD +R+ Q+   +L+NA+ F+  G  V + A+   +G     V + 
Sbjct: 619 NLISDLPPGLPQVMADERRIRQVVINLLANAVKFTPFGGRVTVSASLTPDGGLELHVSDT 678

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  + E+    V   FV    R  RR  G GLGL +V + + +HGG ++I+S  +  T +
Sbjct: 679 GIGMTEEEAAQVIEPFVQVDARIARRHEGTGLGLPMVAAIMEMHGGAIAIASQPDAGTRV 738

Query: 785 NCRIPSK 791
               P +
Sbjct: 739 TVTFPPR 745


>gi|222086249|ref|YP_002544781.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221723697|gb|ACM26853.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 509

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 143/264 (54%), Gaps = 13/264 (4%)

Query: 539 MLTFVNVTDSVRAER--ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL 593
           +L+F +  D + AE   A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF+++
Sbjct: 225 ILSFQSEKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEV 284

Query: 594 LKTSKLGSLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +    +G LN+  + Y EY   I  S   LLNL+N+ILDL+ ++AG  +LN   I L D+
Sbjct: 285 MSAEVMGPLNN--ATYREYTTDIHRSGQHLLNLINEILDLSRIEAGKYELNEEAISLLDV 342

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +    +  +    NI I    + +L S  AD + + Q+   +LSNA+ F+ +G  + +
Sbjct: 343 AEDCIGMVQLRARGKNISISPQFELQLPSVWADEKSIRQVILNLLSNAVKFTPQGGEITV 402

Query: 711 KAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           K    +G   + ++++NG  IPE+    V + F   S A +   +G GLGL IV++ +  
Sbjct: 403 KVGWTSGGGQYVAIRDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAK 462

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           H G   + S     T +   +P+K
Sbjct: 463 HDGQFMLKSKLREGTEVIAILPAK 486


>gi|197118247|ref|YP_002138674.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197087607|gb|ACH38878.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 460

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 174/381 (45%), Gaps = 49/381 (12%)

Query: 415 MFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           M      Q+D LE + N L  +    +  + EG+ V  P G I L NPAF+ L+      
Sbjct: 93  MAAKANAQLDRLEAEKNRLDAI----LRGMGEGIMVADPQGCITLVNPAFKGLF------ 142

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLF-----AAIITSFDDERKSLQGTLELLS-DSVLE 527
              G H            +E +G  L       A+  SF D   S Q  +E L   S  E
Sbjct: 143 ---GLH------------DEVEGRLLIDISRHPALHESFRDILSSRQERVEELQLHSPKE 187

Query: 528 YSI----IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            S+    +PL     +   V V   +            LR+ ++++  FV +VS+ELR+P
Sbjct: 188 RSLLVHWVPLVECGVVTGVVAVFHDI----------SDLRQMEKMRRDFVANVSHELRTP 237

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T I G+ + L    L    ++ +++V  + + +  L +LV+D+L L+ +++G + L   
Sbjct: 238 ITIIKGYAETLLAGAL-EHPTQATKFVSIVHSHADRLASLVSDLLTLSQLESGAVPLEAR 296

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           ++ + ++   V   +  K+ E  I + +       S +AD  RL Q+   +L NA+ ++ 
Sbjct: 297 SVKVQEIAERVVVLLERKIRERGIIVDLAGLKDAPSVMADPGRLEQVIVNLLDNAVKYTP 356

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
            G +V L AA        +V++ G  IP      +F RF  V +A      G GLGLSIV
Sbjct: 357 AGGSVTLSAADREESVTIAVQDTGIGIPSKDLSRIFERFYRVDSARSRDEGGTGLGLSIV 416

Query: 762 ESFINLHGGHVSISSSDEGVT 782
           +  + L GG VS  SS +G T
Sbjct: 417 KHIVQLQGGTVSAQSSGQGST 437


>gi|254413568|ref|ZP_05027338.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179675|gb|EDX74669.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1315

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 172/361 (47%), Gaps = 55/361 (15%)

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            G I   NP +  +W+                 TC   Y+    W L +     +     +
Sbjct: 736  GEILYINPVYEQIWQR----------------TCQSLYDNPRSW-LDSVFPEDYPSTVAA 778

Query: 514  LQGTLELLSDSVLEYSI--------------IPLPNAQTMLTFV----NVTDSVRAERAL 555
            ++  L+  +D    Y I               P+P+ +T   FV    ++TD  + E AL
Sbjct: 779  MERQLQDSTDFDQVYRITRPNGEIRWIRARSFPVPHQKTY-RFVGIAEDITDRKQIELAL 837

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            TE  +A   A+  K++F+ ++S+ELR+PL  I+GFT L++ S   +  +   + ++ I  
Sbjct: 838  TEAKDAAETANRAKSTFLANMSHELRTPLNAIMGFTQLMQRS--STFPADYQENLQIIYR 895

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            SS  LL L+N +LDL+ ++AG + LN +   L  LL +V+     K  +  +++      
Sbjct: 896  SSEHLLTLINQVLDLSKIEAGRITLNQTVFDLYALLRDVENLFQIKARDKGLQLLFDYSD 955

Query: 676  KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD-----------FIF 721
            ++  +V  D  +L Q+   +LSNA  F+ +G  + +K +R  D G+             F
Sbjct: 956  QVPQYVQTDAVKLRQVLINLLSNAFKFTQEGG-ISVKVSRGIDVGETPTANKPEEITLQF 1014

Query: 722  SVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779
             +++ G+ +  +  +S+F+ F+ S   +  + G GLGLSI   F+ L GG ++++S  D+
Sbjct: 1015 EIEDTGAGMAAEELESIFDAFIQSKTGKQHQEGTGLGLSISRKFVQLMGGDLTVASQVDQ 1074

Query: 780  G 780
            G
Sbjct: 1075 G 1075


>gi|163800705|ref|ZP_02194605.1| hypothetical protein 1103602000593_AND4_00543 [Vibrio sp. AND4]
 gi|159175054|gb|EDP59851.1| hypothetical protein AND4_00543 [Vibrio sp. AND4]
          Length = 567

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 134/251 (53%), Gaps = 16/251 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++ E  L ++ EA  KA +    FV  +++ELR+PL  ++G  DLL  +   +L+ +Q 
Sbjct: 187 SLQREVKLRKRAEASEKATK---EFVAMINHELRTPLNGVLGSADLLDKT---ALDGEQQ 240

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QY+  ++ S  +L  ++ND+LD + ++AG+M++        DL N +    A K  E  I
Sbjct: 241 QYLSNLTHSGDLLRVIINDLLDFSKMNAGMMEIINKVFAWKDLENALTGVFAAKAAEKRI 300

Query: 668 RIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
              +  D KLG     + D +R+ QI   ++ NA+ F++ G  V+L+    NG   F V+
Sbjct: 301 HFSI--DKKLGIPEFLIGDFERITQILVNLIGNAIKFTNLGG-VVLRVEWQNGYANFEVE 357

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IP    K++F+ FV  A R  +R   G GLGL+I ++ ++L  G +S  S     
Sbjct: 358 DTGIGIPLGAQKALFDPFV-QADRSTKRSFEGSGLGLAICKNLVDLMEGEISFVSEPRKG 416

Query: 782 TTINCRIPSKE 792
           T    RIP K+
Sbjct: 417 TIFKLRIPLKQ 427


>gi|288959456|ref|YP_003449797.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288911764|dbj|BAI73253.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 680

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDI 627
           K++F+  +S+ELR+PL  IIGF+D++     G L S + + YV ++  S   LL+L+ND+
Sbjct: 441 KSAFLATMSHELRTPLNAIIGFSDIMLHELFGPLGSPRYRDYVRHVQNSGRHLLDLINDV 500

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ ++AG   L+ S +   D +   +   A       + ++V     L   +AD + L
Sbjct: 501 LDMSKLEAGRYTLDESWLEPADAIETCRALAAIPADAGGVTLEVDCPPCLPKLLADERAL 560

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   +LSNA+ F+ +G  V + A R ++G    +V++ G  IP D    +   F    
Sbjct: 561 RQVLLNLLSNAVKFTPRGGRVTVSALREEDGGIAITVRDTGIGIPADALARILEPFQQAD 620

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   +  G GLGLSI    + LHGG +S+ S     T    R P
Sbjct: 621 SSIPARFGGTGLGLSICRDLMALHGGGLSLDSEPGCGTAATIRFP 665


>gi|237713960|ref|ZP_04544441.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409131|ref|ZP_06085675.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647394|ref|ZP_06724984.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807933|ref|ZP_06766713.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446116|gb|EEO51907.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352878|gb|EEZ01974.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637255|gb|EFF55683.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294444871|gb|EFG13558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 420

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 160/294 (54%), Gaps = 27/294 (9%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQT------------MLTFVNVTDSVRAERALTEKN 559
           K+L+ +++LLS+   E ++ P   + +            +LT  +VT+   A+R L  + 
Sbjct: 126 KNLEASMKLLSED--EMTVTPCDVSVSGTYLNIHGKDYMVLTVYDVTELKNAQRLLAIEK 183

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A+++K++F+ ++S+E+R+PL  I+GF+ L+ ++   S   ++  Y + I+ ++  
Sbjct: 184 EHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLMVSA---SGEEERKMYADIIAENNER 240

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL LVNDI DL+ +++G +   Y     NDLL E+      K+  NN  +++I +  +  
Sbjct: 241 LLRLVNDIFDLSQIESGTVDFVYKEFDANDLLRELDGIFKAKL--NNSPVELICEAHVQP 298

Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMC 735
            +  ++R+R++Q+ S +L NAM F++ G   I    R  G  +  F V + G  IPE+  
Sbjct: 299 IMMYSERERIIQVLSNLLHNAMKFTASGE--IRFGCRLEGMEEVYFFVSDTGIGIPEEDQ 356

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           K +F+RF+      Q  G GLGL++ ++ I   GG++ + S     +T +  +P
Sbjct: 357 KKIFSRFIKLDREMQ--GTGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLP 408


>gi|53712343|ref|YP_098335.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215208|dbj|BAD47801.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 633

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 127/230 (55%), Gaps = 11/230 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA + + E      +A+++K++F+ ++S+E+R+PL  I+GF++LL      S+   + + 
Sbjct: 392 RAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLL------SMVEDKEEM 445

Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +EY   I  ++ +LL L+NDILD++ +++G+   + + +  N L++EV+Q    ++  + 
Sbjct: 446 LEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDE 505

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +          F  D+ RL+Q+ + ++ NA+ F+S+G   I    +D     F V + 
Sbjct: 506 VSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDT 565

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  +  + C+ VF RFV   +    +G GLGLSI +  I   GG + + S
Sbjct: 566 GCGMSAEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQS 613


>gi|218780746|ref|YP_002432064.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218762130|gb|ACL04596.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 485

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 21/245 (8%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL  A   K+ F+  VS+ELR+PL  I+GF+ +L+    G LN+KQ QYV  I  S   L
Sbjct: 220 ALEHAKRAKSDFLSSVSHELRTPLNAILGFSQVLQEEYFGGLNTKQKQYVNDILESGKHL 279

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG-KLG 678
           L+L+NDILDL+ V++G MKL    ++++ +L      I  K  ++ I I V +SD  +  
Sbjct: 280 LDLINDILDLSRVESGEMKLEVEPLLISFILESSLHLIREKAFKHGIEITVDVSDEIREM 339

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------RDNGDFI-FSV 723
           + +AD  +L QI   +LSNA  F+     + + A                DN  +I   V
Sbjct: 340 AILADHTKLKQILFNLLSNAAKFTPDKGAICVGARVIHDPVDGGGSQDLDDNPGWIEVFV 399

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  I  D  K VF+ F  VS    G+  G GLGL + +  + LHGG + + S  EG 
Sbjct: 400 RDSGIGIEGDDKKRVFDDFYQVSAGLSGKTPGTGLGLPLAKRLVELHGGRIWVES--EGR 457

Query: 782 TTINC 786
              +C
Sbjct: 458 HQGSC 462


>gi|161830206|ref|YP_001596560.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 331]
 gi|215919011|ref|NP_819664.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 493]
 gi|161762073|gb|ABX77715.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 331]
 gi|206583896|gb|AAO90178.2| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 630

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 136/256 (53%), Gaps = 12/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + E+ L E       +D  K+ F+ ++S++LR+P+  I+G   +     +    
Sbjct: 233 DITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFN---MHEHT 289

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ   +  +SAS+ +LL LV DILD A ++ G ++L YST  L  L+  + ++ + +  
Sbjct: 290 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  I+I V  D  L  S V++   + +IF  ++ NA+ F+ KG   +      N   +  
Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 409

Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777
             VK+ G  IP+D   ++F+RF   +  +  +  G+GLGLSI++  ++  GG V +SS  
Sbjct: 410 ILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSIE 469

Query: 778 DEGVT---TINCRIPS 790
           +EG T   TI C I S
Sbjct: 470 NEGSTFTLTIPCEIAS 485


>gi|51891981|ref|YP_074672.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855670|dbj|BAD39828.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 837

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 139/275 (50%), Gaps = 23/275 (8%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRK 564
           D +   +G L L +   L++S  P+   Q+    + TF +VT+              L +
Sbjct: 560 DPQAVAEGQLRLTTGYTLQWSSAPVGKGQSRVGRLFTFQDVTE--------------LAE 605

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            D +K+ FV  VS+ELR+PLT+I+G+  L+     G L  +Q +++  ++ ++  L NL+
Sbjct: 606 LDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTAGPLQEQQREFLNIVARNTNRLANLI 665

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND+LD+  +++G M ++ S   L  ++ +V ++   +  +  +   V    ++    AD 
Sbjct: 666 NDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPLINADP 725

Query: 685 QRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            RL QI + ++SNA+ ++ +G  TV + A  D  +    V + G  I     K +F +F 
Sbjct: 726 DRLTQIIANLVSNAVKYTKEGGVTVSVSAVGDQVE--LEVADTGIGISPADQKRIFEKFY 783

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              H   R   G GLGL IV++ +  HGG + + S
Sbjct: 784 RAEHPYVREVGGTGLGLPIVKTMVEEHGGDLQLES 818


>gi|88603925|ref|YP_504103.1| multi-sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
 gi|88189387|gb|ABD42384.1| Cache sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
          Length = 646

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 130/240 (54%), Gaps = 4/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +TE+N A  +AD++K++F+  +S+ELR+PL +IIGFT ++     G LN +Q + +  + 
Sbjct: 406 ITERNRA-EEADQLKSAFLATMSHELRTPLNSIIGFTGIILQGLAGPLNKEQEKQLGMVQ 464

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL L+ND+LD++ ++AG + ++   + +   +  V  ++     +  + + V   
Sbjct: 465 DSARHLLALINDVLDISKIEAGELNISREPVNIQKSIESVCTTLRKSAEDKGLSLHVDIS 524

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              G  + D++R+ QI   +++NA+ F+ +G   +  + R+  +   SV + G  I E+ 
Sbjct: 525 PDTGFIIGDQRRIEQILINLINNAIKFTERGYVCVKSSLREK-NVCISVSDTGIGISEEE 583

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            K +F  F  +      +  G GLGLSI +  + LHGG + ++S     +     +P+ E
Sbjct: 584 MKKLFRPFQQIDTGTTRKHEGTGLGLSICKKLVELHGGTIMVTSEPGKGSEFTVILPAGE 643


>gi|300023375|ref|YP_003755986.1| integral membrane sensor signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525196|gb|ADJ23665.1| integral membrane sensor signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 553

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 9/249 (3%)

Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-S 607
           E A    +EA R+A+   + K+ F+  +S+ELR+PL  I+GF+++++   LG + S    
Sbjct: 259 EEASAISDEARRRAEAANKAKSRFLATMSHELRTPLNAIMGFSEVMEKEILGPIGSDTYR 318

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL ++N+ILDL+ ++AG   L+  T+ L D+  + ++ I  K     +
Sbjct: 319 EYAHNIYESGNHLLCIINEILDLSRIEAGRYDLHEETVRLTDIAEDCRRLIKIKADAKTL 378

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKN 725
            I       L    AD + + QI   +LSNA+ F+ +G  +++      D G F+ ++ +
Sbjct: 379 HIVEDFAPDLPHVWADPRAMRQICLNLLSNALKFTPRGGRIVITVGHTSDGGQFV-TISD 437

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D    V   F   S AH+    G GLGL IV++ I+LHGG   + S     T 
Sbjct: 438 TGPGIPKDEIPRVLQAFGQGSLAHQTAEGGTGLGLPIVQNLISLHGGTFDLQSELRKGTE 497

Query: 784 INCRIPSKE 792
           +   +P + 
Sbjct: 498 VTVTLPRQR 506


>gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya zeae Ech1591]
 gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591]
          Length = 955

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 129/252 (51%), Gaps = 6/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++V+  VR E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    
Sbjct: 444 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 500

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL S  ++ V  +  SS +LL +++DILD + +++  +K+  S     +++N +  +   
Sbjct: 501 SLPSDANRLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHILNNYLP 560

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    D  + S  + D  RL Q+ S +LSNA+ F+  G  V   A  D G  
Sbjct: 561 LVVKKRLELYCYIDPNVPSRLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACSDEGYL 620

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           +F V++ G  I       +F+ F       QR  +G GLGL+I E  ++L  G ++I S 
Sbjct: 621 VFKVRDTGVGIDTRSVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESE 680

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 681 PGLGSEFGIRIP 692


>gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
          Length = 1209

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 186/411 (45%), Gaps = 48/411 (11%)

Query: 395 PNGQTLHVIVTSNP---RGGTIWM----FENLTVQ--VDLETKYN-TLVKVQGETIDHLS 444
           P+G+   + + S P     G ++     F ++T +   + E ++  TL++ Q E      
Sbjct: 549 PSGELTWLSINSQPLCDEQGNVYAAVASFHDITARRLAEQELRFQKTLLECQTEAS---P 605

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +GV V  P+ R   SN  FR +W   +        + ++  TC              +++
Sbjct: 606 DGVLVVSPERRCLYSNRRFREMWNLSDR------EVDHVMCTC------------MESLL 647

Query: 505 TSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAE--------RAL 555
               D  +      EL ++  L   + I L + +T   +     S   E        R +
Sbjct: 648 AQVCDPERVRNEIEELYANPSLSGKAEIELKDGRTFERYSAPVISAEGEYYGRVWFFRDV 707

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           TE+    R  + +KN FV  VS+ELR+PLT+I G   LL    +G L  + +  ++    
Sbjct: 708 TER----RAIERMKNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGELPPRAASMIDIALK 763

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S  L+ L+NDILD+  +++G M   +  +VL++L+ +  ++      + ++ I++ +  
Sbjct: 764 NSERLIRLINDILDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATL 823

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDM 734
                  D  R+ Q+ + ++SNA+ FS  G  V +   R+  G    +V ++G  IP + 
Sbjct: 824 PGVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEF 883

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
              +F +F        RR  G GLGLSI  + +  HGG +  +++S  G T
Sbjct: 884 RDRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGTT 934


>gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 738

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D  RAE+AL    E    A   K+ F+ ++S+E+RSP+  I+G   L++ ++L    
Sbjct: 236 DISDRKRAEQALATAKEQAEAASRAKSEFLANMSHEIRSPMNGIMGMAQLMEYTEL---T 292

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y+  I +SS  LL+L+N+ILDL+ ++AG ++L  S   L   ++++ ++  +++H
Sbjct: 293 DEQREYLNVIRSSSHGLLSLINNILDLSKIEAGKIELERSDFSLRASIDDIVKAHLSQIH 352

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  + I+  I      + + D+ RL QI   +L NA+ F+ +G   I  A  +  D    
Sbjct: 353 DKGLTIRTDIPAAAPDTLIGDQLRLKQILLNLLGNAIKFTCRGGIGISVAVSERRDERVR 412

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V + G  IP D  + +F  F        R+  G GLGLSI      L  G +++ S
Sbjct: 413 LRIDVTDTGIGIPTDAMERIFKPFTQADSSTTRQYGGTGLGLSICSRLAELMDGKITVES 472

Query: 777 SDEGVTTINCRIP 789
            +   +T +  +P
Sbjct: 473 REGSGSTFSVHLP 485


>gi|254487932|ref|ZP_05101137.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
 gi|214044801|gb|EEB85439.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
          Length = 529

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 133/260 (51%), Gaps = 16/260 (6%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           PN + ++   ++TD +  ER         ++AD     FV  VS+ELRSPLT+I G   L
Sbjct: 267 PNGRFLIMLNDITDRMAEER---------KQAD-----FVSMVSHELRSPLTSIKGAMGL 312

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L +   G L+ +    +E    ++  L+ ++NDILD+  + +G +  +     ++++++E
Sbjct: 313 LLSRAAGELSPQAVGLLEIAHRNADRLVLIINDILDMEKISSGRLDFDIKEFDVSEMVHE 372

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +S A     + + I+ I          D  R++Q+   ++SNA  FS  G+T+ +   
Sbjct: 373 ALRSNAATQQRSGVNIRCIGLDVPHMIQTDSNRIIQVLINLMSNAAKFSKPGATIEVMVE 432

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           R       SV++ G+ IPE     +F RF  ++N+ RG + G GLGLSI ++ +   GG 
Sbjct: 433 RLASGVRVSVRDEGTGIPEKDHHKIFQRFADMANSDRGAKGGTGLGLSICKAIVEGLGGT 492

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +S  S +   TT    +P+K
Sbjct: 493 ISFESREGEGTTFMFTLPTK 512


>gi|212212885|ref|YP_002303821.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212011295|gb|ACJ18676.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 630

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 136/256 (53%), Gaps = 12/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + E+ L E       +D  K+ F+ ++S++LR+P+  I+G   +     +    
Sbjct: 233 DITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFN---MHEHT 289

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ   +  +SAS+ +LL LV DILD A ++ G ++L YST  L  L+  + ++ + +  
Sbjct: 290 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  I+I V  D  L  S V++   + +IF  ++ NA+ F+ KG   +      N   +  
Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 409

Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777
             VK+ G  IP+D   ++F+RF   +  +  +  G+GLGLSI++  ++  GG V +SS  
Sbjct: 410 ILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSIE 469

Query: 778 DEGVT---TINCRIPS 790
           +EG T   TI C I S
Sbjct: 470 NEGSTFTLTIPCEIAS 485


>gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 804

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 133/251 (52%), Gaps = 16/251 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  E   KA ++K++F+ ++S+E+R+P+  ++G   LL T+KL   N +Q +YVE
Sbjct: 402 EWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL---NDEQKEYVE 458

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +S S+  LL ++NDILD + ++AG + L      +  +L+E+   +     +  I  ++
Sbjct: 459 VLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL 518

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKN 725
               ++  +V  D  RL QI   +  N + F+S+G  V+LK  + N         F+V +
Sbjct: 519 EGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGE-VVLKVTQKNISKSSVSIEFTVMD 577

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EG-- 780
           +G  IP +  K VF  F  N     R+  G GLGLSI +  + L GG + + S D EG  
Sbjct: 578 SGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGVLKLESKDGEGSK 637

Query: 781 -VTTINCRIPS 790
              TI+  IPS
Sbjct: 638 FTFTIDYDIPS 648


>gi|265762536|ref|ZP_06091104.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255144|gb|EEZ26490.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301162051|emb|CBW21595.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 633

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 127/230 (55%), Gaps = 11/230 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA + + E      +A+++K++F+ ++S+E+R+PL  I+GF++LL      S+   + + 
Sbjct: 392 RAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLL------SMVEDKEEM 445

Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +EY   I  ++ +LL L+NDILD++ +++G+   + + +  N L++EV+Q    ++  + 
Sbjct: 446 LEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDE 505

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +          F  D+ RL+Q+ + ++ NA+ F+S+G   I    +D     F V + 
Sbjct: 506 VSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDT 565

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  +  + C+ VF RFV   +    +G GLGLSI +  I   GG + + S
Sbjct: 566 GCGMSAEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQS 613


>gi|294497707|ref|YP_003561407.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294347644|gb|ADE67973.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 957

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D++K+ FV  VS+ELR+PL +++GFT+L+    L     +Q +Y+  I   +  L +L
Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLKE--ERQKKYLTTIYQEAQRLTSL 638

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLGSFVA 682
           +ND LD+  ++AG  K  Y      D+L  +KQ I   K+  +     +ISD +  + + 
Sbjct: 639 INDFLDVQRMEAG--KQTYDK-KYQDILPLIKQVIEVQKIQTSKHEFDMISDQEHFTVMG 695

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ +LLQ+F+ ++SNA+ +S  G  V +K  +        +++ G  IP +    +F +F
Sbjct: 696 DKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDIQDEGIGIPSEALGQLFTKF 755

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V N+   +  G GLGL+IV+  +  HGG +++ S  +  TT    +P
Sbjct: 756 YRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLP 804


>gi|254428730|ref|ZP_05042437.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
           sp. DG881]
 gi|196194899|gb|EDX89858.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
           sp. DG881]
          Length = 927

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 135/241 (56%), Gaps = 14/241 (5%)

Query: 546 TDSVRAERALTEKNEALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +DSVR +RA+ E  EA +    +  K+ F+  +S+E+R+P+  I+G TDLL+ +   S+ 
Sbjct: 405 SDSVR-DRAIAEM-EAFKAGARNHAKSEFLATMSHEIRTPMNGIMGMTDLLRRT---SMT 459

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+QYV  I  S+  LL ++NDILD + +++G ++L+Y  I L +++++  +  A +  
Sbjct: 460 HQQAQYVGTIYQSTQSLLTVINDILDYSKIESGKLELDYQPIALENIVDDCVRLFALRSS 519

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD- 718
           E ++ + +  D ++   +  D  RL QI + +LSNA  F+ +G   +   LK   +N   
Sbjct: 520 EKSLPLYIHIDSRVPERIKTDPIRLKQIITNLLSNAFKFTDRGHVALHVNLKQPVNNKGM 579

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +  V + G  + E    S+F  F   + +G+  G GLGL I +  I L GG + +SS
Sbjct: 580 CVLMIEVVDTGIGLDEGQQSSLFQAFSDLSAKGKHNGAGLGLVICKRLIELLGGDIGVSS 639

Query: 777 S 777
           S
Sbjct: 640 S 640


>gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1209

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 186/411 (45%), Gaps = 48/411 (11%)

Query: 395 PNGQTLHVIVTSNP---RGGTIWM----FENLTVQ--VDLETKYN-TLVKVQGETIDHLS 444
           P+G+   + + S P     G ++     F ++T +   + E ++  TL++ Q E      
Sbjct: 549 PSGELTWLSINSQPLCDEQGNVYAAVASFHDITARRLAEQELRFQKTLLECQTEAS---P 605

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +GV V  P+ R   SN  FR +W   +        + ++  TC              +++
Sbjct: 606 DGVLVVSPERRCLYSNRRFREMWNLSDR------EVDHVMCTC------------MESLL 647

Query: 505 TSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAE--------RAL 555
               D  +      EL ++  L   + I L + +T   +     S   E        R +
Sbjct: 648 AQVCDPERVRNEIEELYANPSLSGKAEIELKDGRTFERYSAPVISAEGEYYGRVWFFRDV 707

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           TE+    R  + +KN FV  VS+ELR+PLT+I G   LL    +G L  + +  ++    
Sbjct: 708 TER----RAIERMKNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGELPPRAASMIDIALK 763

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S  L+ L+NDILD+  +++G M   +  +VL++L+ +  ++      + ++ I++ +  
Sbjct: 764 NSERLIRLINDILDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATL 823

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDM 734
                  D  R+ Q+ + ++SNA+ FS  G  V +   R+  G    +V ++G  IP + 
Sbjct: 824 PGVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEF 883

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
              +F +F        RR  G GLGLSI  + +  HGG +  +++S  G T
Sbjct: 884 RDRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGTT 934


>gi|154706014|ref|YP_001424051.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|154355300|gb|ABS76762.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 630

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 136/256 (53%), Gaps = 12/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + E+ L E       +D  K+ F+ ++S++LR+P+  I+G   +     +    
Sbjct: 233 DITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFN---MHEHT 289

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ   +  +SAS+ +LL LV DILD A ++ G ++L YST  L  L+  + ++ + +  
Sbjct: 290 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  I+I +  D  L  S V++   + +IF  ++ NA+ F+ KG   +      N   +  
Sbjct: 350 QKQIKINIYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 409

Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777
             VK+ G  IP+D   ++F+RF   +  +  +  G+GLGLSI++  ++  GG V +SS  
Sbjct: 410 ILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIE 469

Query: 778 DEGVT---TINCRIPS 790
           +EG T   TI C I S
Sbjct: 470 NEGSTFTLTIPCEIAS 485


>gi|114320953|ref|YP_742636.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227347|gb|ABI57146.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 456

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 2/234 (0%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L + +++KN F+   +++LR+PL  + G+ DLL+   LG LN  Q + +  ++  +  
Sbjct: 212 ERLMELNDLKNRFLGVAAHDLRNPLGVLNGYIDLLRQEALGPLNEAQQEVMGVMADVAER 271

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+LD++ +++G ++L    + LN  L     +        +IRI +     L +
Sbjct: 272 MSALVEDLLDVSAIESGQLELEREPLDLNRFLQGQAHAQGLIAQGKSIRIVLDIPEPLPT 331

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D +RL Q+   +++NA+ FS + ST+ L    D+     SV + G  IP +    +F
Sbjct: 332 VAVDSRRLGQVLDNLIANAVKFSPRDSTITLGGRADDQSVRISVSDQGPGIPAEERAQLF 391

Query: 740 NRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             F   SNA     +  GLGLSIV+  +  HGG V++ ++  G       +P +
Sbjct: 392 QPFRRGSNAPTADEKSTGLGLSIVQKLVQAHGGQVAVDAAPGGGARFTVTLPRQ 445


>gi|255007562|ref|ZP_05279688.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313145254|ref|ZP_07807447.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134021|gb|EFR51381.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 389

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 135/245 (55%), Gaps = 10/245 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + ++++     E  LT   E   +A+ +K++ + ++++E+R+PL  I+GF  LL      
Sbjct: 139 SLMSISKRKALEEELTAAKERAEEANRLKSALIANMNHEIRTPLNAIVGFASLLSIV--- 195

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q +Y+  I +++  LL L+ND++DL+ +++G+M +  S ++L+ L+ E++Q    
Sbjct: 196 DDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIESGVMDMAGSDVLLDPLMEEIEQIYRP 255

Query: 661 KMHENNIRIKVISDG-KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           K    N+ +    DG +LG+ +  DR RL+QI   +L NA+ F+ KG+  +    ++ G 
Sbjct: 256 KAESRNLVLA--WDGEQLGAHIYTDRGRLIQILEHLLCNAIKFTLKGTVRLGYRKKEEGR 313

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN-LHGGHVSISSS 777
             F V + G  IPE+  + +F RFV      Q  G+GLGL + +  ++ LHG     S  
Sbjct: 314 IWFYVTDTGCGIPEEKKELIFERFVKLDDFVQ--GLGLGLPLCKIIVDRLHGTIGVDSKV 371

Query: 778 DEGVT 782
            EG T
Sbjct: 372 GEGST 376


>gi|60680514|ref|YP_210658.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491948|emb|CAH06708.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 633

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 127/230 (55%), Gaps = 11/230 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA + + E      +A+++K++F+ ++S+E+R+PL  I+GF++LL      S+   + + 
Sbjct: 392 RAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLL------SMVEDKEEM 445

Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +EY   I  ++ +LL L+NDILD++ +++G+   + + +  N L++EV+Q    ++  + 
Sbjct: 446 LEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDE 505

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +          F  D+ RL+Q+ + ++ NA+ F+S+G   I    +D     F V + 
Sbjct: 506 VSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDT 565

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  +  + C+ VF RFV   +    +G GLGLSI +  I   GG + + S
Sbjct: 566 GCGMSAEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQS 613


>gi|221234053|ref|YP_002516489.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
 gi|220963225|gb|ACL94581.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
          Length = 600

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+ ++S+ELR+PL  I+GF+D+++    G L+ + ++Y E I  S   LL+L+ND+L
Sbjct: 332 RARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVL 391

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687
           D++ ++A   +L        + +    + +  +     ++++ V+  G+L    ADR+ L
Sbjct: 392 DMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGEL-EVDADRRAL 450

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746
            QI   ++SNA+ F+ +G  V + A   +G     V + G  I PED+ +    R    A
Sbjct: 451 KQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDLER--LGRPYEQA 508

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++  RG GLGLS+V +F  LHGG + I S     TT++ R+P
Sbjct: 509 GGAEQRARGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSVRLP 553


>gi|189466962|ref|ZP_03015747.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
 gi|189435226|gb|EDV04211.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
          Length = 870

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 134/239 (56%), Gaps = 7/239 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  +  +++AL +AD +K++F+ ++S+E+R+PL +I+GF+DLLK     S   +  Q+V+
Sbjct: 634 EELIAARDKAL-QADTLKSAFLANMSHEIRTPLNSIVGFSDLLKDIDAFS-PEEVKQFVD 691

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I+ + T+LL L+NDILDL+ +++G M   ++   L  ++ ++  S    M     + +K
Sbjct: 692 TINTNCTLLLALINDILDLSRIESGSMDFRFAGYNLMFVMQQIYDSQRLSMPPGVELVMK 751

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +  + K  S V D  RL Q+ +  ++NA  F+++GS        D G  +F V++ GS I
Sbjct: 752 LPEESK--SIVTDSIRLKQVINNFINNAKKFTTQGSITFGFQTEDPGYTVFFVEDTGSGI 809

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            E+  + +F RF       Q  G GLGLSI ++ +    G +++SS     T    R+P
Sbjct: 810 SEENQRRIFERFYKVDSFTQ--GAGLGLSICQTIVERFRGEINVSSELGKGTRFTVRVP 866


>gi|91776937|ref|YP_546693.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
 gi|91710924|gb|ABE50852.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
          Length = 1158

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 129/240 (53%), Gaps = 3/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+ E L +A + K+ F+ ++S+ELR+PL + +    LL  ++ G+L+ +Q ++ + I 
Sbjct: 475 LRERAEDLERASQYKSEFLANMSHELRTPLNSSLILAKLLADNREGNLSEEQVKFAQTIY 534

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           ++   LLNL+NDILD++ V+AG ++L    + +  L N ++        +  +   + IS
Sbjct: 535 SAGNDLLNLINDILDISKVEAGKLELKPQELAVQHLANSLQAVFEPLAQQKKLDFSIDIS 594

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                +   DRQRL QI   +LSNA+ F+ KGS  +  +   +    F+VK++G  I   
Sbjct: 595 PQTPDTIYTDRQRLEQILKNLLSNAIKFTDKGSISLHISNNAHDQISFTVKDSGIGIDPS 654

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           M +++F  F        RR  G GLGLSI  +   L GG +++ S+    ++    +P +
Sbjct: 655 MHEAIFAPFRQVDGTSSRRYGGTGLGLSISRNLAALLGGSINVESARGEGSSFTLLVPRQ 714


>gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 822

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 133/251 (52%), Gaps = 16/251 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  E   KA ++K++F+ ++S+E+R+P+  ++G   LL T+KL   N +Q +YVE
Sbjct: 420 EWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL---NDEQKEYVE 476

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +S S+  LL ++NDILD + ++AG + L      +  +L+E+   +     +  I  ++
Sbjct: 477 VLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL 536

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKN 725
               ++  +V  D  RL QI   +  N + F+S+G  V+LK  + N         F+V +
Sbjct: 537 EGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGE-VVLKVTQKNISKSSVSIEFTVMD 595

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EG-- 780
           +G  IP +  K VF  F  N     R+  G GLGLSI +  + L GG + + S D EG  
Sbjct: 596 SGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGVLKLESKDGEGSK 655

Query: 781 -VTTINCRIPS 790
              TI+  IPS
Sbjct: 656 FTFTIDYDIPS 666


>gi|295085256|emb|CBK66779.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 420

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 177/336 (52%), Gaps = 30/336 (8%)

Query: 473 RLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529
           R+    H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   E +
Sbjct: 84  RVGDLLHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--EMT 141

Query: 530 IIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           + P   + +            +LT  +VT+    +R LT + E    A+++K++F+ ++S
Sbjct: 142 VTPCDVSVSGTYLNIHGQDYMVLTVYDVTELKNVQRLLTIEKEHSISAEKLKSAFIANMS 201

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ L+ ++   S   ++  Y + ++ ++  LL LVNDI DL+ +++G 
Sbjct: 202 HEVRTPLNAIVGFSGLMVSA---SGEEERKMYADILAENNERLLRLVNDIFDLSQIESGT 258

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKIL 695
           +   Y     NDLL E+      K+  NN  +++I +  +   +  ++R+R++Q+ S +L
Sbjct: 259 VDFVYKEFDANDLLRELDGIFKAKL--NNSPVELICEAHVQPIMMYSERERIIQVLSNLL 316

Query: 696 SNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            NAM F++ G   I    R  G  +  F V + G  IPE+  K +F+RF+      Q  G
Sbjct: 317 HNAMKFTASGE--IRFGCRLEGMEEVYFFVSDTGIGIPEEDQKKIFSRFIKLDREMQ--G 372

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL++ ++ I   GG++ + S     +T +  +P
Sbjct: 373 TGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLP 408


>gi|189466982|ref|ZP_03015767.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
 gi|189435246|gb|EDV04231.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
          Length = 712

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 129/235 (54%), Gaps = 6/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  +     +
Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAEAD----D 380

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y+  +  ++ +LLNL++DILD++ ++AG ++L  + + L  L  EV  + + K H
Sbjct: 381 DERESYMSLVEENNELLLNLISDILDISKIEAGTVELTITRVDLPRLCREVISTCSHKKH 440

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  + +            AD+ R++Q+ S  ++NA+ F++KGS  +     ++    F V
Sbjct: 441 EEAVVLCFDESSPQIMVDADKNRIMQVLSNFVTNALKFTTKGSVTLSYRLENDTQVRFCV 500

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  IP +    +FNRFV      Q  G GLGLSI +S +   GG + + S +
Sbjct: 501 TDTGKGIPAEQQHEIFNRFVKLDSFSQ--GAGLGLSICQSLVERMGGEIGVESRE 553


>gi|330879671|gb|EGH13820.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 976

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L+ 
Sbjct: 650 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 709

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++++
Sbjct: 710 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 767

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             A+   E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V+L+ +  
Sbjct: 768 MFASTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 826

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               IF + + G  I  +  + +F  F          GVGLGL+I      L GG +S+S
Sbjct: 827 RETAIFDIVDTGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 886

Query: 776 SSDEGVTTINCRI 788
           S+    T    R+
Sbjct: 887 STPGEGTHFKVRL 899


>gi|150398898|ref|YP_001322665.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
 gi|150011601|gb|ABR54053.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
          Length = 421

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 137/254 (53%), Gaps = 5/254 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F ++T+   AE+ L +  + L++ D +K+ F   +S+E+R+P+T+I G+T+LL    +G
Sbjct: 170 AFQDITEQKLAEQKLKKSYDELKELDRLKSEFTAIISHEIRTPITSIKGYTELLNDESMG 229

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN+ Q   +  I  +   L  LV+D+LD++ ++     LN   + + D+L  V   +A 
Sbjct: 230 KLNNNQKMCLNTILENVIRLGRLVSDVLDISRIERNTFTLNIQKVDVKDVLEHVLSELAP 289

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
              + +I++ +  +    +  AD+ RL Q+F+ I  NA+ FS +   V +      N D 
Sbjct: 290 IALKKHIKLSL--EIPNITIDADKDRLNQVFTNITENAIKFSPENEKVEITGKEGLNSDI 347

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + S+K+NG  I ++  + +F+RF  + +++R ++ G GLGL I +  I  H G + + S 
Sbjct: 348 LISIKDNGIGISKNEFEKIFDRFYQIDSSNRRKKGGAGLGLPISKGIIKAHNGKIWVESE 407

Query: 778 DEGVTTINCRIPSK 791
               +T    +P K
Sbjct: 408 LNQGSTFYISLPKK 421


>gi|148655756|ref|YP_001275961.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148567866|gb|ABQ90011.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 899

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 128/265 (48%), Gaps = 12/265 (4%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           E  + Q  L  L D VL  S  P+   + T +  V V   + AE A+          D+ 
Sbjct: 609 ENGATQRDLYRLGDRVLRLSHAPVTTDEGTQIGEVVVLHDISAEVAV----------DQA 658

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+ELRSPLT I G+TDLL    +G L+ +Q   +E +     ++ N+V +++
Sbjct: 659 KTDFIATISHELRSPLTVIYGYTDLLLRGMVGELSGEQRDLLEAVRNRVELMNNIVRNVI 718

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            +A+++A  ++ +++   +  +++E    +     +  + + V +   L    ADR++LL
Sbjct: 719 MVASIEANTLQTDFAAQDVRRMIDEAVAPMRKSFEKKGLALTVTTPDDLPPVRADREQLL 778

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAH 747
            I  +++ NA  ++ +G   I    RDNG     V + G  IP D    +F RF     +
Sbjct: 779 IILGQVIDNARRYTQQGEVTITAHQRDNGMVQIDVSDTGPGIPADAMNRLFTRFFRVEGN 838

Query: 748 RGQRRGVGLGLSIVESFINLHGGHV 772
               RG GLGL I    +  HGG V
Sbjct: 839 NSPERGSGLGLVITRQLVERHGGKV 863


>gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1391

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 129/241 (53%), Gaps = 9/241 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+    E  L+E  +    AD  K+ F+ ++S+E+R+P+  ++G  +LL  S   +L+
Sbjct: 815  DITELKMREAELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS---NLD 871

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             KQ  + + I  S   LL ++NDILD + +DAG M L+ +   L + + +V   ++T+  
Sbjct: 872  PKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAK 931

Query: 664  ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR--DNGDF 719
            E ++ + V  + +L S FV D  R+ QI + +L NA+ F+ +G  ++ +   R       
Sbjct: 932  EKDLELIVRVEPRLESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTRL 991

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              SV + G  IPE+  K VF +F        RR  G GLGL+I    + L GG + + S+
Sbjct: 992  TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESA 1051

Query: 778  D 778
            +
Sbjct: 1052 E 1052



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D +  GV V   D R ++ N AF   W+ +  R   G+  R +    SR  +   G D 
Sbjct: 316 VDEMPIGVLVLDADMRAEVINSAFYDFWRIDPGRAGIGSAFRELM-EASRAIDPY-GADE 373

Query: 500 FAAIITSFDDE---RKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTD 547
            A    + + E   R  + G+ +L  +    L  S+ PLP  + ++++V+VTD
Sbjct: 374 LAWQRHTTEREAEIRAGVAGSKQLPHNDGRTLVASLAPLPGGKRLISYVDVTD 426


>gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 595

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 171/353 (48%), Gaps = 32/353 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV  F  DG I ++NP    F   W  E+   +       I A      NE     L
Sbjct: 265 MADGVITFNRDGEILITNPPAERFLQAWYFEQGNDA------EIIAPLPPQVNE-----L 313

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++   +++ +S++ +L+  +  +L   + PL +        NV  +V   R +TE+ 
Sbjct: 314 FIRVVR--EEKEQSIELSLQGRTWVIL---MTPLYDK------TNVRGAVAVLRDMTEE- 361

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ D+++  F+ +VS+ELR+P+  + G+++ +    + + + ++ +  + I   S  
Sbjct: 362 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAATDEEKKEMAKVIYDESLR 417

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVND+LDLA ++AG + LNY T+ L   +  + +       E  I +    D +   
Sbjct: 418 MGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDNEDIR 477

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R+ Q+ + ++ NA+  + +  TV + A ++ G     V+++G+ IPE+    VF
Sbjct: 478 IRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDLPFVF 537

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF     A    R G GLGL+I ++ +  H G +S+ S     TT    +P+
Sbjct: 538 ERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLPN 590


>gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
          Length = 815

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 12/250 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VT+ + A R ++   E     D +K+ FV +VS+EL++PLT I G+++LL    L     
Sbjct: 447 VTNFILALRDISLAKEL----DRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPP--E 500

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +   Y + I   S  L  LVND+L+++ +++G ++L    + +  ++ E      T+  +
Sbjct: 501 RVRNYYQIIYKESERLTQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTRTSK 560

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + I   V+   +  +FV  D  RL Q+F  +L NA+ +S  G  V ++ A    D +  V
Sbjct: 561 HTI---VLQFPEYPTFVLGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVADKMEDILIEV 617

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP +    +F+RF  V ++ R    G GLGLSIV+S +  HGG +S +S     
Sbjct: 618 QDQGVGIPPEHLPHIFDRFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKVGEG 677

Query: 782 TTINCRIPSK 791
           TT   R+P +
Sbjct: 678 TTFTIRLPRR 687


>gi|325921446|ref|ZP_08183302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548088|gb|EGD19086.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 1054

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 139/265 (52%), Gaps = 11/265 (4%)

Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588
           QT +     T ++ A++   L  +N+ +R ++E+      K+ F+ ++S+ELR+PL + +
Sbjct: 326 QTNVQLEERTQALEAQKQALLVAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 385

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
               LL  +K G+L+ +Q +Y + I +S+  LL L+NDILDL+ ++AG ++L   TI  +
Sbjct: 386 ILAKLLADNKDGTLSPEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETIATS 445

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
            +L  ++++      +  + +++ +D    +  V D QRL QI   +L+NA+ F+  GS 
Sbjct: 446 SVLQRLRETFEPLARQKGLALQITADADAPTQLVMDSQRLQQILKNLLANAIKFTEHGSV 505

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +   A+  G  +F V++ G  I  +  + +F  F       +RR  G GLGLSI     
Sbjct: 506 SLSLQAQAPGRVLFKVQDTGIGIAREQTEIIFEAFRQADGSTRRRYGGTGLGLSISRDLA 565

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG + + S     +     +P+
Sbjct: 566 QRMGGSIRVDSEPGRGSCFTLELPT 590


>gi|224535753|ref|ZP_03676292.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522613|gb|EEF91718.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 709

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 131/235 (55%), Gaps = 6/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L    E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  +     +
Sbjct: 325 DITTRKQVELELILAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAEAD----D 380

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y+  +  ++ +LLNL++DILD++ ++AG ++L  + + +  L  EV  + + K H
Sbjct: 381 DERESYMSLVEENNELLLNLISDILDISKIEAGTVELIITRVDVARLCREVISTCSHKKH 440

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  + ++           AD+ R++Q+ S  ++NA+ F++KGS  +     D+G   F V
Sbjct: 441 EEAVGLRFDESSPQIMVDADKNRIMQVLSNFITNALKFTTKGSVTLSYRLEDDGLLHFCV 500

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  IP +    +F+RFV      Q  G GLGLSI +S +   GG + ++S +
Sbjct: 501 TDTGKGIPAEQQHEIFSRFVKLDSFSQ--GAGLGLSICQSLVERMGGQIGVNSRE 553


>gi|16125315|ref|NP_419879.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
 gi|13637937|sp|Q03228|DIVJ_CAUCR RecName: Full=Histidine protein kinase divJ
 gi|13422363|gb|AAK23047.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
          Length = 597

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+ ++S+ELR+PL  I+GF+D+++    G L+ + ++Y E I  S   LL+L+ND+L
Sbjct: 329 RARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVL 388

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687
           D++ ++A   +L        + +    + +  +     ++++ V+  G+L    ADR+ L
Sbjct: 389 DMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGEL-EVDADRRAL 447

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746
            QI   ++SNA+ F+ +G  V + A   +G     V + G  I PED+ +    R    A
Sbjct: 448 KQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDLER--LGRPYEQA 505

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++  RG GLGLS+V +F  LHGG + I S     TT++ R+P
Sbjct: 506 GGAEQRARGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSVRLP 550


>gi|310658354|ref|YP_003936075.1| histidine kinase [Clostridium sticklandii DSM 519]
 gi|308825132|emb|CBH21170.1| putative Histidine kinase [Clostridium sticklandii]
          Length = 965

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 137/241 (56%), Gaps = 11/241 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ L +  +   +A+E K+ F+  +S+E+R+PL  I G   LLK +    ++  QS YV+
Sbjct: 307 QKDLKKAKKEADEANEFKSGFMARMSHEIRTPLNAITGMAYLLKKT---DISLTQSMYVD 363

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +S  +L+++NDILD + ++AG +++  ++  ++D++  V   ++ K+ E  I  ++
Sbjct: 364 RITQASNNMLSIINDILDFSKIEAGKVEIEEASFSIDDIIQNVVNIVSYKIEEQEIGFRL 423

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNN 726
             D +L + F+ D +R+ Q+   IL+NA  F+ KG       ++    D     F++K+ 
Sbjct: 424 SKDSQLPNWFIGDPKRIEQVLLNILNNAAKFTQKGEVALDIRLIAKESDIYHISFNIKDT 483

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVTT 783
           G  + +   + +F+ FV       RR  G GLGLSIV++ + + GG +++ S+ DEG T 
Sbjct: 484 GIGMTQQQVEKLFSPFVQGDSSINRRFGGSGLGLSIVKNLVEMMGGSINVFSTPDEGSTF 543

Query: 784 I 784
           I
Sbjct: 544 I 544


>gi|330800409|ref|XP_003288229.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
 gi|325081737|gb|EGC35242.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
          Length = 1400

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 23/284 (8%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573
           +++S++PL N +  ++ +     N+T+    E  +  KN  LR       + DE+K  F 
Sbjct: 159 IDFSLMPLFNDKGEVSLILPEGRNITEKRLGEIEIERKNNELRSLYEKIKELDELKTQFF 218

Query: 574 QHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            +VS+ELR+PL  I+G TD LLK   L S N ++   ++ ++ +S  LL +VN++LD++ 
Sbjct: 219 ANVSHELRTPLALIVGPTDKLLKEENL-SENVRKD--LDIVARNSRSLLKIVNNLLDISR 275

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++AG M LNYS + L+  ++ +         E ++   +I+         D  ++ ++ +
Sbjct: 276 LEAGKMNLNYSMVNLSQTVHLIASCFEILAREKSLDFSIITPSIPLMAAIDADKMQRVIT 335

Query: 693 KILSNAMDFSSKGSTV--ILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            +LSNA  F+  G +V  IL+    +     F   V + G  IPE + + +F RF  V  
Sbjct: 336 NLLSNAFKFTPSGGSVKCILEKFDISPTVPGFQIIVSDTGPGIPEKLHEIIFERFRQVDG 395

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  +  G GLGLSIV+ F+ LHGG VSI +  +       RIP
Sbjct: 396 TNTRKHGGTGLGLSIVKEFVTLHGGTVSIHNGSKCGAQFTLRIP 439



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 31/256 (12%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++   L   ++ K+ F  ++S+ELR+PL  I+G+  LL      S +S     ++ I 
Sbjct: 734 LEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDLDSSDDSTIRTGLQTIE 793

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMH---ENNIR 668
             ++    L+ND+LD++ +      L    + L  L+     SI   A   H   + NI 
Sbjct: 794 RCASSQNQLINDLLDMSLIIGDKFSLIMGEVDLPLLIQNAIASILVSAQSKHITIDTNIE 853

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------- 713
                   L +   D+ RL Q+   +LSN++ F+++   + + A                
Sbjct: 854 EPPQDPQVLQNLRGDKSRLQQVIWNLLSNSIKFTNENGKIEIHAKVLNQIPINELGFCSN 913

Query: 714 ------RDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
                 +  GD   + ++ +NG  IP     +VF+RF        R   G+G+GLSI ++
Sbjct: 914 PMFNPIQRQGDRWILLTISDNGKGIPHQFLPNVFDRFKQADCSSTRSYGGLGIGLSITQN 973

Query: 764 FINLHGGHVSISSSDE 779
            I+LH G V  +S  E
Sbjct: 974 IIHLHKGAVFANSQGE 989


>gi|120553437|ref|YP_957788.1| histidine kinase [Marinobacter aquaeolei VT8]
 gi|120323286|gb|ABM17601.1| amino acid-binding domain sensor histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 922

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 135/279 (48%), Gaps = 32/279 (11%)

Query: 543 VNVTDSVRAERALTEKNEALRKAD--------------EIKNSFVQHVSYELRSPLTNII 588
           + V + +R+E AL    + LR A                 K+ F+ ++S+E+R+P+  +I
Sbjct: 540 LEVDERIRSENALRRSEDELRAAKLEAERLAREAEAASRAKSEFLANMSHEIRTPMNAVI 599

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++DLL  S     + +Q  Y+  I A S  LL L+NDILDL+ ++AG M+L++  + + 
Sbjct: 600 GYSDLLYNS---VTDPQQRNYLNAIRAGSRSLLMLINDILDLSRIEAGKMRLDFGPVSVR 656

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            LL++V+     +  E  I ++V +  G   + + D  RL Q+   ++ NA+ F+ +G  
Sbjct: 657 RLLSDVRHIFDLRATEQGITLEVSVGSGMPSAMMLDETRLRQVLFNLVGNAIKFTHEGGV 716

Query: 708 VILKAARDNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
            +   A+  G+             + +V + G  I  D  + +F  F     +  RR  G
Sbjct: 717 TVRAVAKPLGEPADADSEVCYYRLVVTVADTGIGIAPDQQERIFEAFEQQEGQSSRRYGG 776

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGL+I    + + GG +++ S     +T    +P  E
Sbjct: 777 TGLGLAISRKLVEMMGGRLTVKSEANVGSTFKVVLPRVE 815


>gi|295106297|emb|CBL03840.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 554

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 5/244 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L E N  LR  +  K+ F+  +S+ELR+PLT+II FT+LL  +   + + K+++ 
Sbjct: 305 RQRAQLEEANGRLRDENRYKSEFLAMMSHELRTPLTSIIAFTELLNRNSEPA-DEKEAET 363

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I A+S  LL ++NDIL+++ +DAG +++N  T+ L D+   V+  +    +   I  
Sbjct: 364 RREIEANSRALLLMINDILEMSRLDAGRIEMNRETVDLGDIAGMVQAVVQPLANRKGIAF 423

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNG 727
               D  +    AD ++L  +   +  NA+ F+ +G  V L  +   + G     V + G
Sbjct: 424 ACEIDPDVPLVTADFEKLRHVLENLCGNAVKFTPEGGDVRLSISWHPECGQVWLRVADTG 483

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +   + +F+RFV       RR  G GLGLS+ + +  +HGG +S+ S     +   
Sbjct: 484 IGIAKKDQRRIFDRFVQADSSASRRYNGTGLGLSLAKEYAEMHGGTISVESELGHGSVFT 543

Query: 786 CRIP 789
            RIP
Sbjct: 544 VRIP 547


>gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 595

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 171/353 (48%), Gaps = 32/353 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV  F  DG I ++NP    F   W  E+   +       I A      NE     L
Sbjct: 265 MADGVITFNRDGEILITNPPAERFLQAWYFEQGNDA------EIIAPLPPQVNE-----L 313

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++   +++ +S++ +L+  +  +L   + PL +        NV  +V   R +TE+ 
Sbjct: 314 FIRVVR--EEKEQSIELSLQGRTWVIL---MTPLYDK------TNVRGAVAVLRDMTEE- 361

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ D+++  F+ +VS+ELR+P+  + G+++ +    + + + ++ +  + I   S  
Sbjct: 362 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAATDEEKKEMAKVIYDESLR 417

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVND+LDLA ++AG + LNY T+ L   +  + +       E  I +    D +   
Sbjct: 418 MGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDNEDIR 477

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R+ Q+ + ++ NA+  + +  TV + A ++ G     V+++G+ IPE+    VF
Sbjct: 478 IRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDLPFVF 537

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF     A    R G GLGL+I ++ +  H G +S+ S     TT    +P+
Sbjct: 538 ERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLPN 590


>gi|186684333|ref|YP_001867529.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186466785|gb|ACC82586.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1105

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 140/255 (54%), Gaps = 11/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T   + E+ L ++ E L++A++ K+ F+  +S+ELRSPL  I+G++ LLK+ K    
Sbjct: 706 LDLTPRKQLEQTLRQQTEELKQANQNKDEFLAILSHELRSPLNPILGWSSLLKSRKFDEA 765

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + ++  +E I  ++ + + L++++LD++ +  G + L ++T+ L  +++   +++    
Sbjct: 766 TTNRA--LETIERNTQLQIKLIDELLDVSRIIRGKLNLTFATVNLASVIDAALETVRLIA 823

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--- 719
              +I+IK+  D  +G    D  RL Q+   +LSNA+ F+    +V +  +  +G+    
Sbjct: 824 ESKSIQIKIQLDPNVGKVSGDYYRLQQVVGNLLSNAVKFTPPNGSVEVSLS-SSGELASH 882

Query: 720 --IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             +  VK+ G  I  +    VF  F        R+  G+GLGL+IV + + LHGG V+ +
Sbjct: 883 SALIQVKDTGQGISPEFLPHVFEYFRQADSSRTRKFGGLGLGLAIVRNLVELHGGTVTAA 942

Query: 776 SSDEGVTTI-NCRIP 789
           S  EG   I   R+P
Sbjct: 943 SPGEGQGAIFTVRLP 957


>gi|213969639|ref|ZP_03397775.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|213925735|gb|EEB59294.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 1161

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L+ 
Sbjct: 688 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 747

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++++
Sbjct: 748 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 805

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             A    E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V+L+ +  
Sbjct: 806 MFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 864

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               IF + ++G  I  +  + +F  F          GVGLGL+I      L GG +S+S
Sbjct: 865 RETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 924

Query: 776 SSDEGVTTINCRI 788
           S+    T    R+
Sbjct: 925 STPGEGTHFKVRL 937


>gi|218438990|ref|YP_002377319.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218171718|gb|ACK70451.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1516

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 9/247 (3%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            + E+AL ++ E     +++K  F+  VS+E R+PLT+I+G+ +LL+         K++ Y
Sbjct: 1269 KIEKALIKEKEL----NQLKTQFIDVVSHEFRTPLTSILGYAELLERHSDKLSEQKKNNY 1324

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHEN 665
            +  I  +   L +L+ D+L ++  ++G ++LN   + L     DL+ E++  I  K HE 
Sbjct: 1325 LHKIRIAGQRLSDLIEDVLCISRAESGKLQLNPHPLNLEVFCQDLIEEIQIGIG-KNHEM 1383

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
                +  S   L   + D + L  I S +LSNA+ +SS GS V L     N   IF + +
Sbjct: 1384 IFTRQPDSFNSLNGILLDEKLLRHILSNLLSNALKYSSLGSRVELSLYYKNEQVIFEISD 1443

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             G  IP +    +F+ F   ++ G   G GLGL IV  ++ LHGG +  SS     TT  
Sbjct: 1444 QGIGIPAEAHPKLFDSFYRASNVGNIPGTGLGLHIVYKYVTLHGGTIDFSSKISVGTTFR 1503

Query: 786  CRIPSKE 792
             +IP  E
Sbjct: 1504 VKIPISE 1510


>gi|296448200|ref|ZP_06890097.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
 gi|296254284|gb|EFH01414.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
          Length = 1142

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL +K   L +A   K+ F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y +
Sbjct: 471 EVALRQKATELERASRYKSEFLANMSHELRTPLNSALILAKLLADNKSKNLTAEQVKYAQ 530

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+++   LL L++DILDL+ ++AG + L    I +  L N +++       E  + +++
Sbjct: 531 SITSAGNDLLALIDDILDLSKIEAGKIDLELEPIPIIPLANALERRFEPLATERKLELRI 590

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           I D +    + AD QRL QI S +LSNA+ F+  G   +     D     F+V++ G  I
Sbjct: 591 IVDPRCPETIEADGQRLHQILSNLLSNAVKFTEAGRVRLTVEPHDERRLAFTVQDTGIGI 650

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             D  + +F  F        R+  G GLGLSI   F  L GG + + S+
Sbjct: 651 AADQHEVIFQAFRQANGSTNRKFGGTGLGLSISREFAALLGGELRLRSA 699


>gi|299145530|ref|ZP_07038598.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298516021|gb|EFI39902.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 810

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 144/268 (53%), Gaps = 29/268 (10%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +E+L    + Y I PL   +  L                +K E L   D +K++F+ +
Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GF+ LL  ++  S N +Q +Y++ +  ++ +LL L++DILDL+ ++A
Sbjct: 598 MSHEIRTPLNAIVGFSSLL--AETDSRNERQ-EYIKIVQENNELLLQLISDILDLSKIEA 654

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693
           G     Y+ + +N+   E+ +S++ K+ +    +++I +          D+ R  Q+ S 
Sbjct: 655 GTFNFVYTNVDVNETCAEIIKSMSMKVSKG---VELIFEEPFPECYIYTDKNRFTQVISN 711

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NA+ F+ +GS  +      +    F V++ G  IPE+  KSVF RFV      Q  G
Sbjct: 712 FINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 769

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781
            GLGLSI +S ++  GG + + S+ EG+
Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGI 796


>gi|225568537|ref|ZP_03777562.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053]
 gi|225162765|gb|EEG75384.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053]
          Length = 1410

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 136/250 (54%), Gaps = 14/250 (5%)

Query: 540  LTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            L   +VTD + AER    AL        +A+  K+ F+  +S+++R+P+  IIG T  L 
Sbjct: 994  LVQADVTDMLAAERKNKKALENALVLAEEANRAKSDFLSTMSHDIRTPMNAIIGMT-TLA 1052

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             + LG  + + +  +  IS SS  LL+L+NDILD++ +++  + LN   I L D+L ++ 
Sbjct: 1053 VAHLGD-SGRVADCLNKISISSRHLLSLINDILDMSKIESAQISLNRMEIYLPDMLEKLS 1111

Query: 656  QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-- 712
              IA +  E  IR  + ++G +   F  D  R+ QI   ILSNA+ ++ +G +V+  A  
Sbjct: 1112 AIIAPQAGEAGIRFDIRTEGIRHNYFYGDALRIDQILINILSNAVKYTREGGSVMFAAEE 1171

Query: 713  ---ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
                R  G   + F+V + G  + E+  + +F+ F  +A   +  G GLGLSI +  ++L
Sbjct: 1172 IPSVRQAGWLRYRFTVSDTGIGMTEEFLEHIFDPFARSAGTQRIEGTGLGLSITKGLVDL 1231

Query: 768  HGGHVSISSS 777
             GG +S+ S+
Sbjct: 1232 MGGEISVQST 1241


>gi|28871222|ref|NP_793841.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854472|gb|AAO57536.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 1161

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L+ 
Sbjct: 688 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 747

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++++
Sbjct: 748 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 805

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             A    E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V+L+ +  
Sbjct: 806 MFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 864

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               IF + ++G  I  +  + +F  F          GVGLGL+I      L GG +S+S
Sbjct: 865 RETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 924

Query: 776 SSDEGVTTINCRI 788
           S+    T    R+
Sbjct: 925 STPGEGTHFKVRL 937


>gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 842

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 129/249 (51%), Gaps = 18/249 (7%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+    E  L +  +A   A++ K+ F+  +S+E+R+P+  IIG T+L   + +   
Sbjct: 434 LDITERKMMEEDLRQAKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTEL---ALMQEP 490

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +K   Y++ +  S+  LL+++NDILDL+ ++AG ++L ++   L D+L+ + +++    
Sbjct: 491 KAKIRDYLQMVKQSANSLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGA 550

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARD 715
               +      D  +  ++  D  RL QIF  ++ NA+ ++  G   +       + A+D
Sbjct: 551 ERKGLSFSTAIDPGVPDWIKGDEGRLRQIFVNLIGNAIKYTEAGQVSVRVGVEDGRGAQD 610

Query: 716 NGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            G          + SVK+ G  IP+D    +F  F + A   +  G GLGL+I +  + L
Sbjct: 611 AGGRNTPERVCLVASVKDTGGGIPKDKLGRIFEPFDTGARSAKYDGTGLGLAITKRLVEL 670

Query: 768 HGGHVSISS 776
            GG +++ S
Sbjct: 671 MGGRITVQS 679


>gi|212639747|ref|YP_002316267.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
 gi|212561227|gb|ACJ34282.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
          Length = 962

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 14/232 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D++K+ FV  VS+ELR+PL++++GFT+L+ T +L     +Q +Y+  I   +  L  L
Sbjct: 584 EVDQMKSEFVSTVSHELRTPLSSVLGFTELMLTKELKP--ERQKKYLTTIYQEAKRLTAL 641

Query: 624 VNDILDLATVDAGIMKLN--YSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGS 679
           +ND LD+  +++G    +  Y  IV   ++  V   Q + TK+H+ +++ +  +   LG 
Sbjct: 642 INDFLDVQRMESGKQTYDKKYEDIV--SIIENVIETQKVNTKIHQFHVQKETNNTTVLG- 698

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              DR +L Q+F+ ++SNA+ +S +G  + ++           V++ G  IPE+   ++F
Sbjct: 699 ---DRDKLAQVFTNLISNAIKYSPEGGNITVRIYERGTRLCVDVQDEGLGIPEEAIPNLF 755

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  V N+ R +  G GLGL+IV+  +  H G VS++S  +  +T    +P
Sbjct: 756 TKFYRVDNSDRRRIGGTGLGLAIVKEIVKAHEGEVSVTSELKKGSTFTVSLP 807


>gi|325105301|ref|YP_004274955.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324974149|gb|ADY53133.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1198

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 551 AERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER L   +K E L  + + K+ F+ ++S+ELR+PL +I+  + L+  +   +LN +Q +
Sbjct: 506 AERNLEIQKKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMAENTEHNLNEEQIE 565

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               I +S   LL L+++ILDL+ ++AG MKL +  I ++ +++ +K      + E N+ 
Sbjct: 566 SANVIQSSGASLLELIDEILDLSKIEAGKMKLEFQKIEISGIVSALKALFLPIIKEKNLD 625

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +     +G  +  D+ R+ Q+   ++SNA+ F+S+GS + L+ +R+N + +F+VK+ G
Sbjct: 626 FDIKIGADVGQIIETDKMRVEQVMKNLMSNAIKFTSRGS-IGLQISRENNNILFAVKDTG 684

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             IP +  K +F  F   A    RR   G GLGLSI      L GG + + S +   +  
Sbjct: 685 IGIPAEQQKIIFEAF-QQADGSTRRKFGGTGLGLSISREIAKLLGGEIRLLSKESEGSIF 743

Query: 785 NCRIP 789
              +P
Sbjct: 744 TLVVP 748


>gi|237723230|ref|ZP_04553711.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372791|ref|ZP_06619172.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|229447752|gb|EEO53543.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632300|gb|EFF50897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 660

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 145/262 (55%), Gaps = 12/262 (4%)

Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579
           V+E    P+ N Q  +    + V D    +  + E  +A  +A   D++K++F+ ++S+E
Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 304

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL  ++      ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 305 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 362 LKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYEACTVRLDKNRLAQILTNFVTNAI 421

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG T+ +   + + +    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 422 KYTSKG-TIEMGYEKIDENIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478

Query: 760 IVESFINLHGGHVSISSS-DEG 780
           I ++ +    G +   S  D+G
Sbjct: 479 ICKAIVEACRGEIGFESEFDKG 500


>gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
 gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
          Length = 815

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 8/232 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D +K+ FV +VS+EL++PLT I G+++LL   K+     K   Y + I   S  L  
Sbjct: 462 KELDRMKSEFVANVSHELKTPLTAIKGYSELL--IKMNLPPEKVRNYYQIIYKESERLTQ 519

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+ND+L+++ +++G ++L    + +  ++ E      T+  ++ I   V+   +  +F+ 
Sbjct: 520 LINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQTQTSKHTI---VLQFPEYPTFIL 576

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+F  +L NA+ +S  G  + ++ +    D +  V++ G  IP +    +F+R
Sbjct: 577 GDNARLAQVFHNLLDNAIKYSPNGGNIWVRVSDKMEDIVIEVQDQGIGIPPEHLPHIFDR 636

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  V ++ R    G GLGLSIV+S I  HGG +S++S     TT   R+P +
Sbjct: 637 FYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASKVGEGTTFTIRLPRR 688


>gi|331017298|gb|EGH97354.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 1123

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L+ 
Sbjct: 650 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 709

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++++
Sbjct: 710 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 767

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             A    E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V+L+ +  
Sbjct: 768 MFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 826

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               IF + ++G  I  +  + +F  F          GVGLGL+I      L GG +S+S
Sbjct: 827 RETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 886

Query: 776 SSDEGVTTINCRI 788
           S+    T    R+
Sbjct: 887 STPGEGTHFKVRL 899


>gi|92115761|ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
 gi|91798655|gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
          Length = 752

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E AL E  +    A+  K+ F+   S+E+R+PL  IIG + LL  +   SL 
Sbjct: 208 DVTNRTETEYALGEARDHANAANRAKSRFLAMTSHEIRTPLNGIIGMSGLLLDT---SLT 264

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ YV+ + AS   LL+L+ ++LD + ++AG + L     +L+DL+ ++ + +A +  
Sbjct: 265 PEQTTYVKAVKASGDALLSLIEELLDYSRIEAGKIDLESRPFILSDLIEDITELLAPRAQ 324

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF 721
              + I    D +L    + D  RL QI   +  NA+ F+ S G  +I++   + G   F
Sbjct: 325 ARQLEIAAYIDEQLPIEVIGDATRLRQILLNLAGNAIKFTPSGGVALIVEPGTEPGTIRF 384

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  I  D    VF  F     +  R   G GLGLSI +  +   GG +++ S   
Sbjct: 385 MVQDTGIGITPDAQARVFREFEQADEQIARNYGGTGLGLSISDRIVKRMGGRITLESKPG 444

Query: 780 GVTTINCRIP 789
             +T    IP
Sbjct: 445 AGSTFEVSIP 454


>gi|319901914|ref|YP_004161642.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319416945|gb|ADV44056.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 870

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 146/257 (56%), Gaps = 15/257 (5%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           AQ++  + +  D++     +T ++ A+ +AD++K++F+ ++S+E+R+PL  I+GF+DLLK
Sbjct: 622 AQSIQRYKDTEDAL-----ITARDHAM-QADKLKSAFLANMSHEIRTPLNAIVGFSDLLK 675

Query: 596 TSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              L + + ++ Q +V  I+ + T+LL L+NDILDL+ ++AG M+ N +   LN ++ ++
Sbjct: 676 --DLNAFSKEEVQEFVGLINTNCTLLLALINDILDLSRIEAGTMEFNLAEFNLNYIMQDI 733

Query: 655 KQSIATKMHEN-NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             S    M +   +RI+  + +GK  S   D  RL Q+ + +++NA  F+ +GS  I   
Sbjct: 734 YDSQYLSMPQGVELRIECPVEEGK--SIHTDIVRLKQVVNNLVNNAKKFTVQGSITIGYT 791

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             +       V++ G  IPE+  K +F RF    +  Q  G GLGLSI ++ +    G +
Sbjct: 792 VDEPEYTTVYVEDTGKGIPEEAAKHIFERFYKVDNFVQ--GAGLGLSICQTIVEHLRGTI 849

Query: 773 SISSSDEGVTTINCRIP 789
           S+ S     T    R+P
Sbjct: 850 SVFSQVGRGTRFEVRMP 866


>gi|288957783|ref|YP_003448124.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910091|dbj|BAI71580.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 593

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 8/243 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L  + E    A++ K+ F+ ++S+ELR+PL  IIGF D+L +   G    K ++Y+  
Sbjct: 353 RRLQSEKELAEAANQAKSEFLANMSHELRTPLNAIIGFADVLMSGIFGPAPPKHAEYLTA 412

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-- 670
           I  S   LL+LVN++LD+A ++AG ++L  + I L+D L +    +        + +   
Sbjct: 413 IHQSGRHLLDLVNELLDMAKIEAGRLELFPTRIALDDFLTDCLGLVEALALRKGVTLTGD 472

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728
            I+ G L    AD  R+ Q    +LSNA+ F+  G TV L+A    D    + +V+++G 
Sbjct: 473 AIAPGLL--VTADGVRMRQAVLNLLSNAIKFTPAGGTVRLEATADPDGSGTVITVRDSGI 530

Query: 729 SI-PEDMCKSVFN-RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  E+M  ++   R V N       G GLGL +   F+  HGG +++ S     TT+  
Sbjct: 531 GMNAEEMLIAMEPFRQVHNYLTKAEAGTGLGLPLARRFVEAHGGTLTLDSRPGAGTTVTI 590

Query: 787 RIP 789
           R+P
Sbjct: 591 RLP 593


>gi|160882322|ref|ZP_02063325.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
 gi|156112236|gb|EDO13981.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
          Length = 810

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 143/268 (53%), Gaps = 29/268 (10%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +E+L    + Y I PL   +  L                +K E L   D +K++F+ +
Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GF+ LL  +      S++ +Y++ +  ++ +LL L++DILDL+ ++A
Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSK 693
           G     Y+ + +N+   E+ +S++ K+ +    +++I +  L       D+ R  Q+ S 
Sbjct: 655 GTFNFVYTNVDVNETCTEIIKSMSMKVSKG---VELIFEEPLLECYLYTDKNRFTQVISN 711

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NA+ F+ +GS  +      +    F V++ G  IPE+  KS+F RFV      Q  G
Sbjct: 712 FINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKLNTFVQ--G 769

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781
            GLGLSI +S ++  GG + + S+ EG+
Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGI 796


>gi|332702191|ref|ZP_08422279.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552340|gb|EGJ49384.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 960

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 132/253 (52%), Gaps = 17/253 (6%)

Query: 551 AERALTEKNE---ALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           A R +TE+ +   ALRKA       ++ K  F+ ++S+E+R+P++ I+G  D+L     G
Sbjct: 566 AARDITERKDLEDALRKAMSQAEAANQAKGEFLANMSHEIRTPMSGIMGLMDMLLD---G 622

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                Q +++E I  S+  L+++VNDILD + V+AG + ++        L+ EV      
Sbjct: 623 EATPAQRRHLELIRGSARTLMSIVNDILDFSKVEAGQLTIDREAFAPRTLIEEVCGRFEY 682

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718
              +  +R+    D  +  + V+D +RL QI + ++ NA+ F+ +G  +V L+A   +  
Sbjct: 683 MAEQKELRLTCAVDEAVPANLVSDPRRLSQIMTNLVGNALKFTQQGEVSVRLRADTTDKL 742

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV ++GS IP+D    +F RF  + ++   +  G GLGL+I +  +   GG + + S
Sbjct: 743 LTLSVSDSGSGIPKDKLTRLFQRFSQLDSSPAKKAAGTGLGLAICKGLVQALGGDIRVES 802

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 803 ELGAGSVFTVRIP 815


>gi|258593750|emb|CBE70091.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 627

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 18/246 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L   N  L  A   K+ F+ H+S+ELR+PL  I+GF++LL+   +GSLN +Q++++ +
Sbjct: 360 RELRAVNAQLEAASRHKSEFLTHMSHELRTPLNAILGFSELLRNPAIGSLNEQQARHLTH 419

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I A    LL + ND+LDLA V+AG ++L+     ++  +      I     + ++ + + 
Sbjct: 420 IQAGGKHLLVITNDLLDLAKVEAGKLQLHPEPFDIDKAILAALADIRPLADQKHLTLTLH 479

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDN--------G 717
           +D  L    AD  R  QI   +LSNA+ F+ +G  + + A       AR N        G
Sbjct: 480 ADTALVPLTADPLRFKQIIYNLLSNAIKFTPEGGRITVTAHIGSSEGARLNPIPDTLYPG 539

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +F+  +V + G  I  +    +F  F  +      Q  G GLGL++ +  + LHGG +  
Sbjct: 540 EFVEIAVADTGIGITAENLSRLFQPFTQLDPTLAKQYHGTGLGLALTKQLVELHGGRIWA 599

Query: 775 SSSDEG 780
           +S   G
Sbjct: 600 ASDGAG 605


>gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1002

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 134/256 (52%), Gaps = 12/256 (4%)

Query: 544 NVTDSVRAERAL----TEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++ D  R+E AL     EK    EA   A+ +K+ F+  +S+ELR+PL  I+G++ LLKT
Sbjct: 594 DIDDHKRSEEALRNALQEKQAAYEAAETANRVKDEFLAILSHELRTPLNPILGWSQLLKT 653

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            KL     K  + ++ I  ++ + ++L++D+LD++ +  G + LN +T+ L D+++   +
Sbjct: 654 GKLD--KDKTDEALKSIERNAKLQVDLIDDLLDVSRILRGKLTLNVTTVNLADIISAALE 711

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +++       I ++ + +  +G    D  RL QI   +LSNA+ F+ +G  V+++  +  
Sbjct: 712 TMSLAASVKQIAVQTLIEPNIGKVRGDPARLQQIVWNLLSNAIKFTPQGGEVVVQLEQIG 771

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                 V + G  I       +F  F        R+  G+GLGL+IV   + LHGG V  
Sbjct: 772 SMAHIIVSDQGKGINRKFLPHIFEHFRQEDGSTTRKFGGLGLGLAIVRHLVELHGGTVEA 831

Query: 775 SSSDEGV-TTINCRIP 789
            S  EG  TT+   +P
Sbjct: 832 DSPGEGQGTTLKVILP 847


>gi|301384781|ref|ZP_07233199.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060725|ref|ZP_07252266.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302130813|ref|ZP_07256803.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 1123

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 4/253 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L+ 
Sbjct: 650 QTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQR 709

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++++
Sbjct: 710 DT--TTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEK 767

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             A    E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V+L+ +  
Sbjct: 768 MFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGE-VVLRVSYR 826

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               IF + ++G  I  +  + +F  F          GVGLGL+I      L GG +S+S
Sbjct: 827 RETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALSVS 886

Query: 776 SSDEGVTTINCRI 788
           S+    T    R+
Sbjct: 887 STPGEGTHFKVRL 899


>gi|153831971|ref|ZP_01984638.1| para-aminobenzoate synthase [Vibrio harveyi HY01]
 gi|148871969|gb|EDL70792.1| para-aminobenzoate synthase [Vibrio harveyi HY01]
          Length = 566

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 135/251 (53%), Gaps = 16/251 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++ E  L ++ EA  KA +    FV  +++ELR+PL  ++G  DLL  +    L+ +Q 
Sbjct: 187 SLQREVELRKRAEASEKATK---EFVAMINHELRTPLNGVLGSADLLDKT---VLDDEQQ 240

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QY+  +  S  +L  ++ND+LD + ++AG+M++        DL N +    A K  E  I
Sbjct: 241 QYLSNLIHSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRI 300

Query: 668 RIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
              +  D KLG     + D +R+ QI   ++ NA+ F++ G  V+L+    NG   F V+
Sbjct: 301 HFSI--DKKLGIPEFLIGDFERITQILVNLIGNAIKFTNLGG-VVLRVEWHNGYANFEVE 357

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IP +  K++F+ FV  A R  +R   G GLGL+I ++ ++L GG +S +S     
Sbjct: 358 DTGIGIPLEAQKALFDPFV-QADRSTKRSFEGSGLGLAICKNLVDLMGGDISFASVPRQG 416

Query: 782 TTINCRIPSKE 792
           T    +IP K+
Sbjct: 417 TIFKLKIPLKQ 427


>gi|254504682|ref|ZP_05116833.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222440753|gb|EEE47432.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 14/238 (5%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           E  + E+  AL+       KA+E K+ F+ ++S+E+R+P+  +IG   LL  +   SL+ 
Sbjct: 50  EAQVEERTAALKTAMSDAVKANEAKSQFLANISHEIRTPMNGVIGMATLLLDT---SLSD 106

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y   I  SS  LL ++NDILDL+ ++AG ++L+     L D+++ V + +A     
Sbjct: 107 NQRHYATTIRESSDALLTIINDILDLSKLEAGRLELSNEEFQLADVIDGVLEILAPAAIS 166

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFS 722
            ++ +      +L  S V D  RL QI   +  NA+ F+ KG+  + +  A+ +G   F 
Sbjct: 167 RSLDLVSFLPMELQTSVVGDAGRLRQILLNLAGNALKFTDKGTVAVRVSEAKSSGKVRFE 226

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           +++ G  IP+D   ++F++FV       R+  G GLGL+I    I+L GG + + S +
Sbjct: 227 IEDTGIGIPQDQLPTLFDKFVQVDPSSSRQHGGTGLGLAITRQLISLMGGRIGVQSEE 284


>gi|253563619|ref|ZP_04841076.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947395|gb|EES87677.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 633

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 127/230 (55%), Gaps = 11/230 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA + + E      +A+++K++F+ ++S+E+R+PL  I+GF++LL      S+   + + 
Sbjct: 392 RAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLL------SMVEDKEEM 445

Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +EY   I  ++ +LL L+NDILD++ +++G+   + + +  N L++EV+Q    ++  + 
Sbjct: 446 LEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDE 505

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +          F  D+ RL+Q+ + ++ NA+ F+S+G   I    +D     F V + 
Sbjct: 506 VSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDT 565

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  +  + C+ VF RFV   +    +G GLGLSI +  I   GG + + S
Sbjct: 566 GCGMSVEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQS 613


>gi|298528782|ref|ZP_07016186.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512434|gb|EFI36336.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1037

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 135/255 (52%), Gaps = 13/255 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  R ++ L +  E    A++ K+ F+ ++S+ELR+P   I+G   LL+T+   +L+
Sbjct: 635 DITDRKRDKKELLKAKEQAEAANQAKSRFLANMSHELRTPFNGIMGMMQLLQTT---TLD 691

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV+    SS     L++DILDL++V+ G M +  S   L + L  +         
Sbjct: 692 EEQQEYVDMAIKSSQRFARLLSDILDLSSVETGRMSIFNSEFDLGEALGSIHDIFDASAR 751

Query: 664 ENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           E  + ++ +  D      + D  R+ QI   ++SNA+ F+ KG   I    L AA+  GD
Sbjct: 752 EKGVFLEYLPGDDVPAKVIGDAVRVKQILITLVSNALKFTEKGVVEIRLDALCAAK-GGD 810

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               F+V + G  IPED  K++F  F  +  ++  + +G GLGLSIV+  + L  G++ I
Sbjct: 811 VRIKFAVSDTGIGIPEDQLKNLFTPFEQLDGSYTRKHQGAGLGLSIVKRLVELMNGNIDI 870

Query: 775 SSSDEGVTTINCRIP 789
            S     TT++  +P
Sbjct: 871 DSLPGEGTTVHVVLP 885


>gi|91778882|ref|YP_554090.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691542|gb|ABE34740.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 1194

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 3/234 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +D +RA+  L      L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +
Sbjct: 466 SDLLRAQDDLAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRAGNLTEE 525

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ ++  L  +++         
Sbjct: 526 QVRYAETIHASNSDLLVLINDILDLSKVEAGQVTVELETVSIDATLQALEEMFKPMAAAR 585

Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +R+      G   +F++D QR+ QI   +LSNA+ F+  G   +  A  + G     V+
Sbjct: 586 QLRLAFERLPGTPDTFISDGQRVTQILRNLLSNAVKFTEHGEVALSVAPAEGGMLRIDVR 645

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++G  I  D    +F  F     +   Q  G GLGLSI   F  L GG ++++S
Sbjct: 646 DSGIGIAPDKLDMIFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVAS 699


>gi|2599570|gb|AAB84171.1| hybrid histidine kinase [Dictyostelium discoideum]
          Length = 709

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 146/283 (51%), Gaps = 21/283 (7%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573
           +++S++PL N +  ++ +     N+T+    E  +  KN  LR       + DE+K  F 
Sbjct: 157 IDFSLMPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFF 216

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+PL  I+G TD L   +   +N ++   +E ++ ++  LL +VN++LD++ +
Sbjct: 217 ANVSHELRTPLALIVGPTDKLLKDENVDINVRKD--LEIVARNARGLLKIVNNLLDISRL 274

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG M LNYS + L    + +         E ++   +I+  +      D  ++ ++ + 
Sbjct: 275 EAGKMNLNYSMVNLGQTAHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITN 334

Query: 694 ILSNAMDFSSKGST--VILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           ++SNA  F+  G     IL+    + +   F   V + G  IP+++ + +F RF  V  +
Sbjct: 335 LISNAFKFTPSGGAGKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGS 394

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  G GLGLSIV+ F+ LHGG V+I +   G      R+P
Sbjct: 395 STRKHGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLP 437


>gi|282899118|ref|ZP_06307099.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
 gi|281196034|gb|EFA70950.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
          Length = 1068

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 18/249 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  +  + L  KN  L + + +K+ F+  +S+EL++PLT ++G + LL    LG LN
Sbjct: 348 DVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGELN 407

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------- 654
            +Q++Y   I  S   L+++VNDILDL  ++ G M+L  S + + ++ +           
Sbjct: 408 ERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALVEARSVHN 467

Query: 655 ---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
              ++  +   HE ++ I    +  L   VAD  RL Q+   +L NA  F+     V L+
Sbjct: 468 QTGRKGESLPSHEFSLSI----EPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLR 523

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             R  G   F+V + G  IP+     +F +F  + N    Q  G GLGL +  +   LHG
Sbjct: 524 VNRWEGWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHG 583

Query: 770 GHVSISSSD 778
           G VS  S +
Sbjct: 584 GDVSFLSRE 592


>gi|329934254|ref|ZP_08284333.1| histidine kinase [Streptomyces griseoaurantiacus M045]
 gi|329305850|gb|EGG49705.1| histidine kinase [Streptomyces griseoaurantiacus M045]
          Length = 460

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 6/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K   L++A E K  F  ++S+ELR+P+  ++G + LL T     L+ +Q + VE I+
Sbjct: 205 LEDKRRQLQEASEAKTRFWTNISHELRTPVNAVVGLSRLLLTPGPSPLSPEQQEQVELIA 264

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   +L LV+D+LD+A  +AG ++++   + +  ++  +   + +   E  +R+ +   
Sbjct: 265 ASGHTMLALVSDLLDVAKAEAGHLEIHAEPVDIRLVVTHLGGLLRSHA-EGGVRLVLPPL 323

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--FIFSVKNNGSSIP 731
               + V D   L++I   +LSNAM F+ +G   + + A  D  D   IF+V + G  IP
Sbjct: 324 DDAPALVTDETLLVRILRNLLSNAMKFTERGEVRLDVTADPDVHDRAVIFTVTDTGVGIP 383

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    VF  F  V   H+  R G GLGL    +   L GG +S++S+    T +  R+P
Sbjct: 384 AEEIDRVFEAFYQVRGPHQRGRPGTGLGLPYARTLAELLGGSLSLTSTVGEGTRVRVRVP 443


>gi|160886358|ref|ZP_02067361.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|260173508|ref|ZP_05759920.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921779|ref|ZP_07918019.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156108243|gb|EDO09988.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|313695654|gb|EFS32489.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 660

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 145/262 (55%), Gaps = 12/262 (4%)

Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579
           V+E    P+ N Q  +    + V D    +  + E  +A  +A   D++K++F+ ++S+E
Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 304

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL  ++      ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 305 IRTPLNAIVGFSDLLMVTED---QEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 362 LKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 421

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG T+ +   + + +    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 422 KYTSKG-TIEMGYEKIDENIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478

Query: 760 IVESFINLHGGHVSISSS-DEG 780
           I ++ +    G +   S  D+G
Sbjct: 479 ICKAIVEACRGEIGFESEFDKG 500


>gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 584

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 174/358 (48%), Gaps = 37/358 (10%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWD 498
           ++ + EGV V   D  + L NPAF +++ T  E +  P   I       +R+       D
Sbjct: 253 LNGMGEGVMVTDRDAVVTLVNPAFCTMFATGAELQGRPLLQI-------TRHP------D 299

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERAL 555
           L+AA                E+LS    ++  I L   +T+L     +   D ++   A+
Sbjct: 300 LYAA--------------CREVLSARQEQHQEIALAGGKTVLVHWVPLRDGDGLQGAVAV 345

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                A ++ ++I+  FV +VS+ELR+P+T I G+ + L +  L +   +  +++  I  
Sbjct: 346 FHDISAFKRVEKIRRDFVANVSHELRTPVTVIKGYAETLLSGALAADPERAERFLLIIQN 405

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  LV D+L L+ +++G M +    + L++ + +    +  +  E  ++++  + G
Sbjct: 406 HADRLSGLVRDLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPA-G 464

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
           + G  V ADR RL Q+   +L NA+ +S  G +V ++ AR+ GD +  SV+++G  IPE 
Sbjct: 465 EAGLTVQADRGRLEQVLINLLDNAIKYSETGKSVGVETARE-GDLVRVSVRDSGIGIPEK 523

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RF  V  A      G GLGLSIV+  +  HGG + + S     +  +  +P
Sbjct: 524 DLPRLFERFYRVDEARSRDNGGTGLGLSIVKHIVQAHGGTLEVKSEQGKGSVFSFTLP 581


>gi|75907244|ref|YP_321540.1| histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700969|gb|ABA20645.1| histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1109

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 136/272 (50%), Gaps = 20/272 (7%)

Query: 525 VLEYSIIPLPNAQTM--LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +L+ + + LPN   +  +   +VT+  +  + L  KN  L + + +K+ F+  +S+EL++
Sbjct: 353 LLDNTDLKLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKT 412

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT ++G + LL   +LG LN +Q++Y   I  S   L+++VNDILDL  ++ G M+L  
Sbjct: 413 PLTAVLGLSRLLVDQQLGELNERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTP 472

Query: 643 STI----VLNDLLNEVKQ----------SIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
             +    V +  L+E K           + AT+       + +  D  L   VAD  RL 
Sbjct: 473 VPVSIRAVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSIELD--LDQIVADELRLR 530

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   +LSNA  F+     + L+ +   G   F+V + G  IPE     +F +F  + N 
Sbjct: 531 QMLVHLLSNAFKFTEISGEIGLRVSHWEGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENP 590

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              Q  G GLGL +  +   LHGG VS  S +
Sbjct: 591 LTRQFEGTGLGLVLTRALARLHGGDVSFLSRE 622


>gi|119716160|ref|YP_923125.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536821|gb|ABL81438.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 920

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 2/232 (0%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E LR+ D  K+ FV  VS+ELR+P+ +I+G+T+LL+   +     +Q   +E I+ +   
Sbjct: 686 ERLRQLDVAKSEFVSTVSHELRTPVASIVGYTELLEDGTVVDPAPEQRPMLESIARNGQR 745

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ L +D+L L+ +D+G     + T+ L  LL   +++I  ++   ++ + ++++     
Sbjct: 746 LILLCDDLLTLSGLDSGATAWQHDTLDLATLLPPAEEAIRPQLTGRDLELSMLAEPAPVL 805

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + DR +L +    +L NA+ F+  G  +  +  R + +   S+ + G  IP +    +F
Sbjct: 806 VLGDRVQLERALINLLGNAVKFTEDGGRIECRVGRQDDEAWLSISDTGLGIPVEEQNGLF 865

Query: 740 NRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF   S A     +G GLGLSIV + +  HGG + + S+    TT   R+P
Sbjct: 866 QRFFRSSTAQAHAIQGTGLGLSIVAATVAAHGGRIDVDSAHLQGTTFTVRLP 917


>gi|307154390|ref|YP_003889774.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
 gi|306984618|gb|ADN16499.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
          Length = 561

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + + L  A +  + F+ H  +ELRSPLT I+ F+ +L     GSLN+KQSQYV+ I 
Sbjct: 325 LEAQKQQLEFAKKKTSEFLDHTIHELRSPLTGILSFSQILHEQIYGSLNAKQSQYVDVIV 384

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   +L+LVND LDL+ + A   ++    + + D+       +  +   + + +K+   
Sbjct: 385 SSGQYMLSLVNDFLDLSKISAQREEIVLEAMAVEDVCLAALAMVEVRAVASQLTLKLDIA 444

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +    AD++R+ QI   +L+NA+ F+ KGS V LK  R      FSV + G  I  + 
Sbjct: 445 PDVDFCKADQRRIKQILVNLLTNAIKFTEKGS-VTLKVERKQDYLDFSVIDTGIGIKTED 503

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F  + N    + +G GLGL++      LHGG +++ S +   +     +P
Sbjct: 504 QNKLFQPFQQIKNHLSRKHKGTGLGLALSRQLAQLHGGDITLVSQEGQGSCFTLHLP 560


>gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 822

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 144/269 (53%), Gaps = 13/269 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +LE + +   +   + +F+ +T+    ER L    +A  KA+  K+ F+  +S+E+R+PL
Sbjct: 279 LLEVTPMQGESGGAVASFIEITERKEMERELITARDAAEKANRFKSRFLASMSHEIRTPL 338

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG TDL   S+   L++KQ++ +E +  S+  LL L+NDILDL+ V+A ++ L  S 
Sbjct: 339 NAIIGLTDLTLRSE---LSTKQAEDLELVKISADQLLTLINDILDLSKVEARMLTLEESD 395

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             L++ + +V +S+  +  +  + + + + D    +   D+ RL QI   ++ N++ F+ 
Sbjct: 396 FSLSEAMRDVVRSMEQQARDKGLALNIEVDDDVPEAVCGDQVRLKQILYNLIGNSIKFTE 455

Query: 704 KGSTVI----LKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
            G   +    L+  +D+ +   + SV++ G  IP++    VF  F        R+  G G
Sbjct: 456 NGGVFVQVSKLEDRKDSDEAVILVSVRDTGIGIPDEKQNIVFESFRQADDSTTRKFGGTG 515

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTI 784
           LGL+I    + + GG + + SS EG  ++
Sbjct: 516 LGLAISRELVEMMGGRIGVKSS-EGFGSV 543


>gi|153869355|ref|ZP_01998987.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074121|gb|EDN71011.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1314

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 130/280 (46%), Gaps = 40/280 (14%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A  A   K   L  A+  K+ F+ ++S+ELR+PL +++    LL  +K G+LN KQ +Y
Sbjct: 594 KARTAAELKARELELANRYKSEFLANMSHELRTPLNSLLILAQLLVDNKHGNLNDKQVEY 653

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I +S   LL L+N+ILDLA V+AG ++++   I L DL+  ++      + E ++  
Sbjct: 654 AKTIHSSGADLLKLINEILDLAKVEAGKIEIHNEDISLADLVETLEHKFHPLIEEQDLNF 713

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------------------- 709
           ++     L   +  DRQRL QI + +LSNA  F+S+G   +                   
Sbjct: 714 QITVANDLPDILHTDRQRLTQILNNLLSNAFKFTSQGEVRLKIQSASSLSGPHPSPLPEG 773

Query: 710 ------------------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
                             L   R  G  IFS+ ++G  IP D  + +F  F        R
Sbjct: 774 EGENIGPFLLGEGQLPRPLGEGRGEGLIIFSITDSGIGIPNDKQQVIFEAFQQADGTTSR 833

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           R  G GLGLSI      L GG + + S +   +T    +P
Sbjct: 834 RYGGTGLGLSISRQLARLLGGDILLHSEENKGSTFTLCLP 873


>gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 499

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 3/250 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  RAE AL  K      A + K+ F+  VS+EL++PL +IIGF+DLL     G L+
Sbjct: 225 DITERQRAEDALL-KVRIAEDASQAKSEFIATVSHELKTPLNSIIGFSDLLLEDSSGKLS 283

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q++Y+  IS S   LL  ++DILDL+ ++AG   L         +  ++++    ++ 
Sbjct: 284 ERQARYINNISISGKHLLQFIDDILDLSKIEAGKTFLEPENFEFTKIFKDIEKVFRPRVS 343

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +    D  + SF AD+    QI   ++SNA+ F+ +  ++ + AA+        V
Sbjct: 344 GKKLSLNFEVDSGIKSFYADKMMFKQILYNLISNAVKFTPEEGSITVSAAKIGNMVRICV 403

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I  +   S F  F       +RR    GLGL +V+ F+ +HGG++   S     
Sbjct: 404 KDTGIGISREDMDSFFQPFKQPDSFFKRRYERTGLGLFLVKRFVEMHGGNIQAESVPGEG 463

Query: 782 TTINCRIPSK 791
           ++    +P K
Sbjct: 464 SSFIIELPLK 473


>gi|300690102|ref|YP_003751097.1| sensor protein [Ralstonia solanacearum PSI07]
 gi|299077162|emb|CBJ49788.1| Sensor protein [Ralstonia solanacearum PSI07]
          Length = 995

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 131/251 (52%), Gaps = 14/251 (5%)

Query: 549 VRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V  ERA  +  EA R+A E     K+ F+  +S+E+R+P+  ++G  +LL+ ++L     
Sbjct: 352 VTVERAQADALEAARQAAESALRAKDRFLAMMSHEIRTPMNGVLGLVELLQRTRL---ER 408

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q + V     S   LL++++D+LD A ++AG + +  +   L +L +     +A++ HE
Sbjct: 409 EQQRMVTLAQESGRALLHILDDVLDHAKIEAGHLAITPAPTDLRELFDSTVGLLASRAHE 468

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719
            ++ ++V  D  + + V+ D  RL Q+ S +LSNA+ F+ +G    S   ++AA D    
Sbjct: 469 RSLAVRVDVDATVPATVSVDSMRLRQVLSNLLSNAIKFTERGSVRLSAACVEAAADTVRL 528

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I  V + G  I  +   ++F  FV    R   R  G GLGL+I      L GG + + S+
Sbjct: 529 IIRVSDTGIGIAPEAQATLFTPFVQADSRTTHRHGGTGLGLAISRQLARLMGGSLDMDST 588

Query: 778 DEGVTTINCRI 788
               TT+  R+
Sbjct: 589 PGVGTTLTLRL 599


>gi|282897975|ref|ZP_06305970.1| Histidine Kinase [Raphidiopsis brookii D9]
 gi|281197119|gb|EFA72020.1| Histidine Kinase [Raphidiopsis brookii D9]
          Length = 1056

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 18/249 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  +  + L  KN  L + + +K+ F+  +S+EL++PLT ++G + LL    LG LN
Sbjct: 336 DVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGELN 395

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------- 654
            +Q++Y   I  S   L+++VNDILDL  ++ G M+L  S + + ++ +           
Sbjct: 396 ERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALTEARAVHT 455

Query: 655 ---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
              ++  +   HE ++ I    +  L   VAD  RL Q+   +L NA  F+     V L+
Sbjct: 456 QTGRKGESLPSHEFSLTI----EPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLR 511

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             R  G   F+V + G  IP+     +F +F  + N    Q  G GLGL +  +   LHG
Sbjct: 512 VNRWEGWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHG 571

Query: 770 GHVSISSSD 778
           G VS  S +
Sbjct: 572 GDVSFLSRE 580


>gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 910

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 5/231 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ IK+ F+  VS+ELR+PL  I+G+T +L+  KL +    Q++ +E I  +      L
Sbjct: 669 EANRIKDEFLATVSHELRTPLNAILGWTQILRRRKLDA--ESQARALETIERNGRAQNQL 726

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + DILD++ +  G +KL+   + L  ++ E   S+       +I +    D +  S   D
Sbjct: 727 IEDILDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHIALHCTLDAEAASVSGD 786

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+   +LSNA+ F+ +G  + ++ A D    + SV+++G  I  +    +F RF 
Sbjct: 787 PARLQQVVWNLLSNAIKFTPEGGRIDVRLAADGASALLSVRDSGVGITPEALPYIFERFR 846

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPSK 791
                  R   G+GLGL+IV   + LHGG V+  S   G   +   R+P +
Sbjct: 847 QADGSNTRAFGGLGLGLAIVRHLVELHGGTVTAHSDGPGRGALFAVRLPRR 897


>gi|163739230|ref|ZP_02146642.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
 gi|161387630|gb|EDQ11987.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
          Length = 759

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 123/239 (51%), Gaps = 11/239 (4%)

Query: 546 TDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           T S R ER  AL E  +A   A+  K+ F+ ++S+E+R+P+  +IG  +L+  +    L+
Sbjct: 215 TFSERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET---DLD 271

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q+ Y E IS S + LL ++NDIL+ + ++AG M+L  +   L   + +V   ++ K  
Sbjct: 272 EDQTMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAA 331

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
           E N+ + +  D  L   +  D  R+ QI + +  NA+ F+ KG   I  +   + D    
Sbjct: 332 EKNVEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTAL 391

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             SV + G+ IPED    +FN F     A      G GLGL+I    + L GG +S+ S
Sbjct: 392 RISVTDTGAGIPEDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQS 450


>gi|291571976|dbj|BAI94248.1| putative PAS/PAC sensor protein [Arthrospira platensis NIES-39]
          Length = 959

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 176/393 (44%), Gaps = 49/393 (12%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E KY ++        ++ +EG+    PDGR   +NPA   +   +    SP   I N+  
Sbjct: 557 EAKYRSI-------FENAAEGICQTTPDGRYISANPALARILGYD----SPEDLIANLTD 605

Query: 486 TCSRYYNESDGWDLFAA------IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             ++ Y +      F A      +I+ F+ +     GT   +S+           NA+ +
Sbjct: 606 VSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISE-----------NARAV 654

Query: 540 L-----------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                       T  ++T+  RA  AL    EA   A+  K++F+ ++S+ELR+PL  II
Sbjct: 655 FDAIGELVCYEGTVEDITEGKRAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAII 714

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++++L               +E I  +   LL L+NDILD++ ++AG M L      ++
Sbjct: 715 GYSEILLEEAEELGYEDIVPDLERIYTAGKNLLTLINDILDISKIEAGRMDLFVEAFDVS 774

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            LL  V  +    M +NN  + V     +G   AD  ++ QI   +LSNA  F++ G   
Sbjct: 775 GLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTDGKIK 834

Query: 709 I-------LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           I       L  ++++G  + F V + G  +  +  + +F  F        RR  G GLGL
Sbjct: 835 IEVSRVSSLPYSQESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDASTTRRYGGTGLGL 894

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I + F  + GG++ + S+    +T    IP++
Sbjct: 895 AISDRFCQMMGGNIQVQSTLGEGSTFKVVIPTR 927


>gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 581

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 161/353 (45%), Gaps = 30/353 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESDGWDLFA 501
           + EGV V    G I L NPAFR  +        PG    R +   C R+ +         
Sbjct: 253 MGEGVMVTDTKGNIILVNPAFRKQFGL------PGEVEGRPLVEVC-RHPD--------- 296

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-DSV-RAERALTEKN 559
            ++ +F+++R+S         D V     IP+ N   M  +V +T DS  R   A+    
Sbjct: 297 -LLQAFEEQRES--------GDEVSCEITIPITNLVLMAHWVPLTRDSGNRGTVAVFHDI 347

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             L++ + ++  FV +VS+ELR+P+  I G+ + L    L     +  ++VE I + +  
Sbjct: 348 SDLKRVETMRRDFVANVSHELRTPVAVIKGYGETLLDGALEESPERSRRFVEIIVSHAER 407

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L NL+NDIL L+ ++A    L    + L   + + +  +        IRI       +  
Sbjct: 408 LTNLINDILTLSKLEARDAALTLHPLDLCGTIRKAQMLMEDHARSKGIRIAAECPDGMPK 467

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD+ +L Q+   +L NA+ ++  G  V + A  +    + +V + G  IP      +F
Sbjct: 468 VLADQGQLEQVLLNLLDNAIKYTPDGGDVTVAARLEQERVVVAVSDTGIGIPARDLPRIF 527

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF  V      ++ G GLGL+IV+  + LHGG V ++S     +T    +P+
Sbjct: 528 ERFYRVDEGRSREQGGTGLGLAIVKHIVQLHGGEVQVASEAGKGSTFTVTLPT 580


>gi|319778144|ref|YP_004134574.1| pas sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317171863|gb|ADV15400.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 811

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+    ++  ++KN F+  VS+ELR+PLT+I G   L+     G L  K +  V  
Sbjct: 306 RDITEQ----KRTAQLKNDFISTVSHELRTPLTSIRGSLGLIAAGVAGELPPKAANLVNI 361

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              +S  L+ L+NDILD+  +++G++      + +  +L +   + +  M ++ IRI ++
Sbjct: 362 AHTNSERLVLLINDILDMEKIESGVITFKIKQMPVRQVLEQAIAASSNYMADSRIRIVLV 421

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731
            D        D  RL Q+ + +LSNA+ FS    TV +K  R + D +  SV + G+ IP
Sbjct: 422 DDAPRAEANIDPDRLHQVMANLLSNAIKFSQTDGTVTVKFQRRDRDMLRISVVDQGAGIP 481

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E     +F +F        R+  G GLGLSIV+S     GG VS  + +   T+ +  +P
Sbjct: 482 EAFRSRIFGKFEQADASSTRKIGGTGLGLSIVKSITEKLGGAVSFETEEGQGTSFHVDLP 541


>gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
 gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
          Length = 1029

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 6/254 (2%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              +VT+ V AER L    E   +A  +K++F+ ++S+E+R+PLT I+GF +LL       
Sbjct: 773  MADVTELVEAERQLKAAKERAEEASRLKSAFLANMSHEIRTPLTGILGFAELLDEELETR 832

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++   I  S+  LL L+NDILDL+ ++A  ++L      + D+  +  Q +   
Sbjct: 833  QQEDLREFTHIIDRSARRLLTLLNDILDLSKIEANRLELKLQPTDVVDVARQAVQLMQPL 892

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
              E  +++++ ++  L +  AD  RL Q+   +LSNA+ F+ +G  V ++  +  G  + 
Sbjct: 893  AEEKGLKLELHAEENL-TARADPNRLHQVLVNLLSNAIKFTDEGH-VRVELGQKKGWVLL 950

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V++ G  I  +    +F  F    H G   + +GVGLGL+IV+  I+L  G +++ S  
Sbjct: 951  AVEDTGCGISPEFLPHLFEPF-RQEHEGLTQKHQGVGLGLAIVKRLIDLMSGQITVQSEV 1009

Query: 779  EGVTTINCRIPSKE 792
               T     +PS E
Sbjct: 1010 GRGTRFEILLPSVE 1023


>gi|328952020|ref|YP_004369354.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
 gi|328452344|gb|AEB08173.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
          Length = 1352

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 12/246 (4%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L E N AL++ D +K  F+ +VS+ELR+PL +I+G+T LL     G++N  Q + +  + 
Sbjct: 843  LGEANRALKELDRLKTEFLANVSHELRTPLNSILGYTQLLLDGVDGAINEDQQKSLLRVE 902

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +S  LL L+ND+LDL+ + AG ++LN     L+++L+E  Q +        I +KV  +
Sbjct: 903  KASNRLLQLINDVLDLSKLRAGRLELNAQKEDLHEILSEALQVVEPLARAKEISLKV-EE 961

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVI----LKAARDNG---DF-IFSVKN 725
             ++   + DR +++Q+   +LSNA+ F+ S G   I    +     +G   D+    + +
Sbjct: 962  SEVPPVIVDRDKIIQVLLNLLSNAVKFTDSHGLITINLNTVSLPESHGLIKDYAAVRISD 1021

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  I ED  +++F  FV       RR  G GLGL I    + +HGG + + S     +T
Sbjct: 1022 TGIGIKEDDLQNIFQEFVQIDSSATRRHGGTGLGLPISRHLVEMHGGRIWVESEYGKGST 1081

Query: 784  INCRIP 789
                +P
Sbjct: 1082 FTFILP 1087


>gi|165920276|ref|ZP_02219548.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 334]
 gi|165916832|gb|EDR35436.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 334]
          Length = 630

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 12/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + E+ L E       +D  K+ F+ ++S++ R+P+  I+G   +     +    
Sbjct: 233 DITERKQNEQKLIEAKLKAELSDRAKSEFIANISHDFRTPINGILGIAQIFN---MHEHT 289

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ   +  +SAS+ +LL LV DILD A ++ G ++L YST  L  L+  + ++ + +  
Sbjct: 290 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQ 349

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  I+I V  D  L  S V++   + +IF  ++ NA+ F+ KG   +      N   +  
Sbjct: 350 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 409

Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777
             VK+ G  IP+D   ++F+RF   +  +  +  G+GLGLSI++  ++  GG V +SS  
Sbjct: 410 ILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIE 469

Query: 778 DEGVT---TINCRIPS 790
           +EG T   TI C I S
Sbjct: 470 NEGSTFTLTIPCEIAS 485


>gi|164686079|ref|ZP_01947585.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212219130|ref|YP_002305917.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|164601638|gb|EAX31792.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212013392|gb|ACJ20772.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 551

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 136/256 (53%), Gaps = 12/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + E+ L E       +D  K+ F+ ++S++LR+P+  I+G   +     +    
Sbjct: 154 DITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFN---MHEHT 210

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ   +  +SAS+ +LL LV DILD A ++ G ++L YST  L  L+  + ++ + +  
Sbjct: 211 KKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVIFLVKTFSFQTQ 270

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  I+I V  D  L  S V++   + +IF  ++ NA+ F+ KG   +      N   +  
Sbjct: 271 QKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKGQIDVTVNLEGNKPAMLK 330

Query: 723 --VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777
             VK+ G  IP+D   ++F+RF   +  +  +  G+GLGLSI++  ++  GG V +SS  
Sbjct: 331 ILVKDTGLGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIE 390

Query: 778 DEGVT---TINCRIPS 790
           +EG T   TI C I S
Sbjct: 391 NEGSTFTLTIPCEIAS 406


>gi|153870360|ref|ZP_01999777.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152073175|gb|EDN70224.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 1105

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 178/361 (49%), Gaps = 31/361 (8%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +Q + +++++EGV +    G + L+N     ++  +EN L  G H+ +I  + S   N  
Sbjct: 487 IQAKILENMAEGVNLTTESGLMLLTNRLLTRMFGYDENELI-GQHV-SILNSLSPEENMV 544

Query: 495 DGWDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
               + A + T       F++++K   GT        + Y+ I   +      FV V + 
Sbjct: 545 FVNHVIADLQTKEIWEGEFNNQKKD--GT------HFISYAYISALDISGQHYFVTVQED 596

Query: 549 V----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +    +AE AL +  E    A+  K+ F+  +S+E+R+P+  ++GF++LL  S+L + N 
Sbjct: 597 ITERKQAEIALQQAKEQAESANRAKSEFLATMSHEIRTPMNAVLGFSELL--SELVT-NK 653

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  Y++ I  +   LL L++DILDLA ++AG + + Y  +   ++  E+KQ    K+ +
Sbjct: 654 QQKSYLDSIKMAGKTLLTLIDDILDLAKIEAGRLDIQYEAVNPYNIFEELKQIFVLKIVD 713

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK-----GSTVILKAARDNGD 718
             +   V  D  L  + + D  RL Q+   ++ NA+ F+ K     G+  I K  +   D
Sbjct: 714 KQLDFIVDIDENLPLALILDETRLRQVLLNLIGNAVKFTEKGYIKLGAQKIDKMDKSKID 773

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + SV++ G  IP    + +F  F     +  R+  G GLGL+I    + +  G +S++ 
Sbjct: 774 LLISVEDTGIGIPLAQQEMIFEAFRQQDGQSNRKYGGTGLGLAITRRLVEMMNGDISVTG 833

Query: 777 S 777
           +
Sbjct: 834 T 834


>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1099

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 10/245 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F ++T     ER L E  EA    +  K+ F+  +S+E+R+P+  +IG T LL  +K
Sbjct: 433 VLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTK 492

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L     +Q  + E I  S   LL ++NDILD + ++AG + L+Y+   L  L+  V   +
Sbjct: 493 L---TEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDIL 549

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A + H   I I  + D +L   V +D  RL Q+   +  NA+ F+ KG   I    L+  
Sbjct: 550 APRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLERP 609

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  IP +    +F+ F+       RR  G GLGL+I      L GG 
Sbjct: 610 GAQPMVHFDVRDTGIGIPPEAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGE 669

Query: 772 VSISS 776
           V + S
Sbjct: 670 VGLES 674


>gi|21242035|ref|NP_641617.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107436|gb|AAM36153.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1068

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 137/265 (51%), Gaps = 11/265 (4%)

Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588
           QT +     T ++ A++   L  +N+ +R ++E+      K+ F+ ++S+ELR+PL + +
Sbjct: 337 QTNVQLEERTQALEAQKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 396

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
               LL  +K G+L+++Q +Y + I +S+  LL L+NDILDL+ ++AG ++L   T+V  
Sbjct: 397 ILAKLLADNKDGTLSAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTG 456

Query: 649 DLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +L  ++ +      +  + +++  + G     V D QRL QI   +L+NA+ F+  G  
Sbjct: 457 SVLQRLRDTFEPLARQKGLALEITAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKV 516

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +L  A   G   F+V + G  I  +  + +F  F       +RR  G GLGLSI     
Sbjct: 517 GLLVQASAPGRVRFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 576

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG +S+ S     +     +P+
Sbjct: 577 QRMGGSISVDSEPGRGSCFTLELPT 601


>gi|295703077|ref|YP_003596152.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294800736|gb|ADF37802.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 957

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D++K+ FV  VS+ELR+PL +++GFT+L+    L     +Q +Y+  I   +  L +L
Sbjct: 581 EVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLKE--ERQKKYLTTIYQEAQRLTSL 638

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLGSFVA 682
           +ND LD+  ++AG  K  Y      D+L  +KQ I   K+  +     +ISD +  + + 
Sbjct: 639 INDFLDVQRMEAG--KQTYDK-KYQDILPLIKQVIEVQKIQTSKHEFDMISDQEHFTVMG 695

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ +LLQ+F+ ++SNA+ +S  G  V +K  +        +++ G  IP      +F +F
Sbjct: 696 DKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDIQDEGIGIPNKALGQLFTKF 755

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V N+   +  G GLGL+IV+  +  HGG +++ S  +  TT    +P
Sbjct: 756 YRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLP 804


>gi|294633343|ref|ZP_06711902.1| sensory box histidine kinase/response regulator [Streptomyces sp.
           e14]
 gi|292831124|gb|EFF89474.1| sensory box histidine kinase/response regulator [Streptomyces sp.
           e14]
          Length = 604

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 127/243 (52%), Gaps = 8/243 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K   L +AD  K+ F  +VS+ELRSP+ ++I    LL  S    L  +Q + V  + 
Sbjct: 173 LEDKTRQLERADAYKSRFWANVSHELRSPVNSVIALARLLLDSAADPLTDEQRRQVSLVQ 232

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS + LL LV+++LD+A  ++G ++ + + + L  LL++++  +     +  + +++   
Sbjct: 233 ASGSTLLALVDELLDIAKAESGRLEPHPAEVDLRSLLHQLR-GMLQGTAQPGVDLRIPDH 291

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGD-FIFSVKNNGSSI 730
             L   V D   L +I   +LSNA+ F+  G  V L+ A   R++GD F+F V++ G  I
Sbjct: 292 IPLRPLVTDEVMLTRILRNVLSNALKFTV-GGRVALEVAEEEREDGDRFVFRVQDTGVGI 350

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  + VF  F  V   H+  R G GLGL        L GG +++ S     T +   I
Sbjct: 351 PAEELERVFEEFYQVRGPHQRGRAGTGLGLPYARRLTELLGGRLTLDSEVGRGTRVIIEI 410

Query: 789 PSK 791
           P++
Sbjct: 411 PAR 413


>gi|295084122|emb|CBK65645.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 810

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 142/268 (52%), Gaps = 29/268 (10%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +E+L    + Y I PL   +  L                +K E L   D +K++F+ +
Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GF+ LL  +      S++ +Y++ +  ++ +LL L++DILDL+ ++A
Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693
           G     Y+ + +N+  +E+ +S+  K+ +    +++I +          D+ R  Q+ S 
Sbjct: 655 GTFNFVYTNVDVNETCSEIIKSMGMKVGKG---VELILEEPFPECYIYTDKNRFTQVISN 711

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NA+ F+ +GS  +      +    F V++ G  IPE+  KSVF RFV      Q  G
Sbjct: 712 FINNALKFTQQGSITLGYEQVPHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 769

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781
            GLGLSI +S ++  GG + + S+ EGV
Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGV 796


>gi|91774323|ref|YP_567015.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713338|gb|ABE53265.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 505

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 133/248 (53%), Gaps = 2/248 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+   AE+A+ E N  L   D IK+ F+ ++++ELR+PL +I GFT+L+    +G +N
Sbjct: 257 DITERKIAEKAMEEANRELELLDNIKDQFLTNLTHELRTPLISIKGFTELMLEDHMGPIN 316

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   +  +  +S  L +LV  +L ++      +K N   + L  +  E+ ++    + 
Sbjct: 317 DAQKNAIHTVLRNSERLRHLVESLLYVSGEHTKNIKYNMDVLSLTKITEEILETFTAPIL 376

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  + I+      L + + D+  L ++ + +L NA+ F+ +G  + + A  D+   I ++
Sbjct: 377 KKGLTIERNIQTDLPTILGDKDHLKRMINHLLDNAIKFTPEGGKIGISALHDSESVIINI 436

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IPE++  ++F+RF  V  + R +  G G+GL I +  I  H G +S+SS     
Sbjct: 437 EDTGIGIPEELLPNIFSRFYQVDGSTRRKYGGTGVGLHICKKIIEAHKGSLSVSSKIGEG 496

Query: 782 TTINCRIP 789
           T I+ ++P
Sbjct: 497 TIISVKLP 504


>gi|162448655|ref|YP_001611022.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159237|emb|CAN90542.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 534

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 143/280 (51%), Gaps = 26/280 (9%)

Query: 537 QTMLTFVNVTDSVRAE-RALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNII 588
           +++LT      S+R   R L++KN       E L++ D +K++F+  VS+ELR+PLT+I+
Sbjct: 240 KSLLTSTMHVASIRESFRELSQKNAELEQAYERLKELDRLKSNFLATVSHELRTPLTSIM 299

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++++L     G L  +Q ++++ I + S  LL L+  +LDL+ +++G + ++ + + + 
Sbjct: 300 GYSEMLAEGIGGPLTDEQREFIDTIRSKSEQLLGLIMSLLDLSKLESGTLIVHRTEVAVG 359

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +L E   +IA    +  + +++ ++  L   + D  RL Q+F  ++ NA+ F+  G  V
Sbjct: 360 PVLVEAASTIAPAASKKGVELRIQAEDDLPPVLGDGDRLRQVFINLVENAVKFTEAGGEV 419

Query: 709 ILKA---ARDNGDFI-------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQ 750
           +L A   + D  D                 V + G  IP      VF+ F  +  +   +
Sbjct: 420 LLVARAVSEDMDDLPGLVLVAPLQQAVEIRVVDTGIGIPAGERLKVFDPFYQIDQSSTRE 479

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGLSIV+  +  H G V I  +D   T    ++P+
Sbjct: 480 HGGTGLGLSIVKRLVEAHSGTVRIEPNDPRGTVFVVKLPT 519


>gi|75675393|ref|YP_317814.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420263|gb|ABA04462.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 779

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 137/270 (50%), Gaps = 5/270 (1%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D  L  ++I L   Q  L    +  +  A++   EKN A   A+  K+ F+ ++S+ELR+
Sbjct: 492 DLRLRATVIDLKRTQATLEQQAIKLADLAQKYADEKNRA-EDANRAKSKFLANMSHELRT 550

Query: 583 PLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           PL  IIGF++++     G+L S K S+Y   I  S   LL ++ND+LD++ ++AG   L+
Sbjct: 551 PLNAIIGFSEIMSNGMFGTLGSTKYSEYCRDILTSGQYLLEVINDVLDMSKIEAGRTNLD 610

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             T+ L  +L+E  + ++ +  +  +   V SD  + S +ADR+ + QI   +LSNA+ F
Sbjct: 611 METLDLTGVLDESLRVVSGRTSDKGLTFDVRSDDDI-SIIADRRAVKQIMVNLLSNAVKF 669

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           +     ++ ++         ++ + G  I     + +   F  V +       G GLGL+
Sbjct: 670 TPASGRIMARSKVFENSVTLTIADTGIGIAPHALRRLGKPFEQVESQLTKTHAGSGLGLA 729

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I +S +NLH G + I S     T +   +P
Sbjct: 730 IAKSLVNLHSGSMRIRSKPGAGTVVRVTLP 759


>gi|160937915|ref|ZP_02085273.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439141|gb|EDP16895.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
          Length = 960

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 146/295 (49%), Gaps = 16/295 (5%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK--NEAL---RK 564
           ++  + G    LS  ++ Y   P  +    +  V V DS RAE+A  E+   +AL   + 
Sbjct: 387 QKMGMDGKYHWLSVQII-YVENPFNDDVLAIELVKVLDSQRAEQARQEQLLRDALASAKA 445

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+  +S+++R+P+  I+G + + +  KL    S Q  + + I ASS  LL+L+
Sbjct: 446 ANQAKSDFLSRMSHDIRTPMNAIVGMSTIGQL-KLDDRRSVQDCFCK-IDASSRYLLSLI 503

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VAD 683
           NDILD++ ++ G M+L +      +L++EV Q I  +  E  I   +     L  F + D
Sbjct: 504 NDILDMSKIETGKMELAHEYFDFTELMDEVNQIIYPQAEERQIEYVIYHSEPLEQFYIGD 563

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNG--DFIFSVKNNGSSIPEDMCKSV 738
             RL QI   +LSNA+ F+  G  +   I +  R NG     F VK+ G  +  +    +
Sbjct: 564 PLRLKQILMNLLSNALKFTRAGGRIQIQIEEQKRTNGFSYLRFQVKDTGIGMSREFRSRL 623

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  F   A    R   G GLGLSIV + + L GG + + S  E  +     +P K
Sbjct: 624 FMPFEQEAPETARNNIGSGLGLSIVYNLVQLMGGSIEVESEKEKGSVFTVTLPFK 678


>gi|94267227|ref|ZP_01290820.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93452082|gb|EAT02766.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1295

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 17/256 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA R L  K   L  +   K+ F+ ++S+ELR+PL +I+  + LL  +K G+L  +Q ++
Sbjct: 549 RARRELETKARDLETSGRYKSEFLANMSHELRTPLNSILILSQLLAANKEGNLQPRQLEF 608

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S + LL+L+N++LDL+ ++AG M++N  T+ L ++++ +      +  +N +R+
Sbjct: 609 ANTIHNSGSDLLHLINEVLDLSKIEAGRMEINPDTVELKEMIDSLLGPFQAQAEQNGLRL 668

Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------------D 715
              I+     +   D  RL QI   +LSNA+ F+ +G  + L+  R              
Sbjct: 669 SGEITPEAPATIFTDETRLRQILKNLLSNALKFTQQGE-ITLRCGRPARAELPTGLRLVP 727

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F+V ++G  I  D  + VF  F        R+  G GLGLSI      L GG +S
Sbjct: 728 ERAVYFAVSDSGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLGGELS 787

Query: 774 ISSSDEGVTTINCRIP 789
           +SS +   TT    +P
Sbjct: 788 VSSCEGEGTTFTLWLP 803


>gi|159900627|ref|YP_001546874.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159893666|gb|ABX06746.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 3470

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 3/229 (1%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +AD  K  FV  VS+ELR+PLT I GF DLL    +G L+  Q + +  +  ++  ++ L
Sbjct: 3228 EADRAKRDFVATVSHELRTPLTPIRGFVDLLLLGAVGQLSDPQREMLNTVKTNAMRMVGL 3287

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            V D+L++  ++AG + LN +   +N L+ ++  +   ++ + N+ +K+  D  L     D
Sbjct: 3288 VEDLLEIGRLEAGKIVLNTAPNQINQLVRDIVATWGLEIEKKNMTLKLELDDTLPLIEYD 3347

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
             +R+ Q+ + ++SNA+ ++  G  VI++   +    I   VK+ G  +  +  KS+F RF
Sbjct: 3348 SKRIGQVLTNMVSNAIKYTYAGGDVIIRTFINEDKMIQLDVKDTGVGLTAEQQKSMFKRF 3407

Query: 743  --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +  R +  G GLGLSI +SFI LH G + + S     +T +  +P
Sbjct: 3408 YRADSPLRDEVGGTGLGLSIAKSFIELHNGDMWVQSVYGEGSTFSFSLP 3456


>gi|153007303|ref|YP_001381628.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030876|gb|ABS28644.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 464

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 129/242 (53%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +    L++ D +K++F+  +S+ELR+PLT++IG+++++     G L ++Q +Y+  
Sbjct: 204 RELEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGI 263

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671
           I      LL L+  ILD++ ++AG ++L  S +   D    ++ +IAT +     + +KV
Sbjct: 264 IMEKGENLLQLITSILDISKIEAGRVRLVLSDV---DATQIMRDAIATVLPLARKKGLKV 320

Query: 672 ISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSS 729
             D G +    ADR +L Q    + SNA+ F+  G T+ + A    GD     V + G  
Sbjct: 321 ACDAGAMPRVQADRDKLRQCLVNLCSNAVKFTPAGGTIAVSAEALPGDRLAIHVADTGIG 380

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I E+    VF+ F  V  +   +  G GLGL+IV+SF+  HGG V + S     TT    
Sbjct: 381 IGEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEVGVRSIPGVGTTFTVI 440

Query: 788 IP 789
           +P
Sbjct: 441 LP 442


>gi|257487363|ref|ZP_05641404.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330988052|gb|EGH86155.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331009038|gb|EGH89094.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 576

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 131/260 (50%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L +LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARD 715
              I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L        +A   
Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAGVI 470

Query: 716 NGDFI----------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
            GD+                  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 EGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549


>gi|83944788|ref|ZP_00957154.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851570|gb|EAP89425.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
          Length = 577

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+  K+ F+ ++S+E+R+PL  ++G   LL+ ++L   + +Q  YV  +++S T L  L
Sbjct: 200 KANAAKSRFLANMSHEIRTPLNGVMGMAQLLEQTEL---DDRQRDYVRMLNSSGTALRGL 256

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA- 682
           ++D+LD++ ++AG ++L+ +     DLL     +IA++     + +++    +L + VA 
Sbjct: 257 IDDVLDISRIEAGELELDDTPYRPADLLRNTADTIASQAASKKLTVELDIAPELEALVAG 316

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  R+LQI +    NA+ F+  G+  I     + G    SV + G  I  D  KS+F RF
Sbjct: 317 DATRVLQILTNFAGNAVKFTDVGAIAISGRVLETGQMELSVSDTGPGIAPDQVKSIFERF 376

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + ++   Q  G GLGL+I +    L GG + + S     +    R+P +
Sbjct: 377 SQLDDSVGRQHEGAGLGLTIAQEIAVLAGGDIGVESELNAGSRFWVRLPHR 427


>gi|299148396|ref|ZP_07041458.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513157|gb|EFI37044.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 936

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T +L   
Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 742

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            S++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 743 -SERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 801

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E    ++++ D  L     ++DR R+ Q+ S  ++NAM F+S+GS  +    +D G+  
Sbjct: 802 KE---EVELVLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 857

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 858 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911


>gi|297582973|ref|YP_003698753.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141430|gb|ADH98187.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 457

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 134/251 (53%), Gaps = 11/251 (4%)

Query: 549 VRAERALTEKNEAL-RKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +R    + E  E L R A E+      + + + ++S++LRSPLT++ GF   L+   +  
Sbjct: 205 IRTRDEIGELGETLNRMASELATIESTRKTILANISHDLRSPLTSVKGFLIALEDGTIPV 264

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              K+  Y E I + +  ++ LVNDIL+L  +++G + L+  T  L D LNE  +S    
Sbjct: 265 --EKRFSYYERIRSETDRVITLVNDILELTRIESGGITLDRETYDLTDQLNEQIRSFEKP 322

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           M +  I++      + G S  AD  RL +++  +L NA+ ++ +G +V + A        
Sbjct: 323 MADKGIQLHFEPAARDGLSVYADYNRLNRVWQNLLENALRYTPEGQSVTVSAVHSVHLVT 382

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             V N+G+ IPE+    ++ RF  ++  R  + G G+GLSIV+S   LHGG V + S++E
Sbjct: 383 VHVTNSGTVIPEETLPLIWERFYKADDSRSGKGGSGIGLSIVKSITGLHGGTVDVDSNEE 442

Query: 780 GVTTINCRIPS 790
             TT +  +PS
Sbjct: 443 SGTTFSVTLPS 453


>gi|108763603|ref|YP_632616.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108467483|gb|ABF92668.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 1109

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 25/347 (7%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++ +++GV +      I + NPA R L    EN   P           +R   E  G+  
Sbjct: 315 VESMADGVVLTDEKNDIVVMNPAARRLLHAGEN---PEEQ-------TTRLMEERLGFQP 364

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  +        + L+  ++L  D  ++ ++ P+ +A+  L  V V       R +TE+ 
Sbjct: 365 FHLVRGWEYGGGQVLREEVKLF-DRHVQTTVTPVTDARNTLRGVCVV-----LRDITEQ- 417

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              ++ +E K+ FV  VS+ELR+PLT+I G  DL+     G +N +Q +Y+     S+  
Sbjct: 418 ---KRLEERKDEFVSMVSHELRTPLTSISGALDLVLNFMAGDINERQRRYLSLARDSTEK 474

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  +V+D+LDL+    G +++N+    L++L+  V +       E  + +K +       
Sbjct: 475 LNAIVDDLLDLSKFAKGRLRMNFEVSYLDELVQRVVEKYGPAFGEKRVLVKPVLPRHPLR 534

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            +AD  RL Q+ + +L+NA+ F+ +G  V   I   +   G  + S  N+G  I E+  +
Sbjct: 535 VLADPNRLDQVLNNLLNNAVKFTPEGGEVRVEIHATSSLPGYVVVSCWNSGDPISEESLE 594

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +F+RF     +  R  RG GLGL+I  + +  HGG +      +GV
Sbjct: 595 RIFDRFEQARTKANRTVRGTGLGLAICRNIVEAHGGRIWCEPCTDGV 641


>gi|328873301|gb|EGG21668.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1223

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 145/285 (50%), Gaps = 24/285 (8%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALR-------KADEIKNSFV 573
           +++S++PL +    +  +     N+T+   AE  +  KN  LR       + DE+K  F 
Sbjct: 136 IDFSLMPLFDENGAVKLILPEGRNITEKKLAEDEIARKNNELRSLYEKIKELDELKTQFF 195

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+PLT I   T+  K  K   +++   + +E ++ ++  LL  VN++LD++ +
Sbjct: 196 ANVSHELRTPLTLISHPTE--KLLKDPGVSADAKKLLEVVARNTRGLLKHVNNLLDISKL 253

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQRLLQIF 691
           +AG M +NYS   +   +  +         +  +   I    DG L + + DR ++ ++ 
Sbjct: 254 EAGKMNVNYSMADVGKTITTIGLCFELLAKDKKLEYIINAPKDGLLMAAI-DRDKIERVV 312

Query: 692 SKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           + ++SNA  F+  G  + +    D    N  F+ +V + G  +PED    +F RF     
Sbjct: 313 TNLISNAFKFTPTGGKIRISVEPDQLNQNPAFLVTVADTGPGVPEDQYDIIFERFRQVDG 372

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN-CRIP 789
              RR  G GLGLSIV+ F+ LHGG+V +++  EG   +   RIP
Sbjct: 373 SSSRRHGGTGLGLSIVKEFVQLHGGNVQVTAQKEGTGAVFLIRIP 417



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 121/254 (47%), Gaps = 40/254 (15%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +A+  K+ F+ ++S+ELR+PL  I G++ LL+    G++++   + +E I   +    
Sbjct: 683 LDRANRSKDEFLMNLSHELRTPLNGIFGWSQLLRYD--GNISTDVRRGLEAIERCAHAQN 740

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSF 680
            LVND+LD++ V +G   L+   +   D+   ++ +  T ++++  + K++ D G L   
Sbjct: 741 QLVNDLLDMSLVISGKFSLSNEVV---DIREVIRLAAETFINKDKAKTKIVVDVGDLPLI 797

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------------------------- 712
           V  D  RL Q    ++SN++ FS++G +V ++                            
Sbjct: 798 VCGDPVRLEQSIWNLVSNSIKFSNQGGSVTVRTSIPSQTGTTPLTLPPGVCGQSEEKLNL 857

Query: 713 ----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
               A +    + ++ + G  I  D    VF RF    N+      G+GLGLSIV + + 
Sbjct: 858 LRNHASNKNWCLVTISDQGCGITHDFLPHVFERFRQADNSSTRGHGGLGLGLSIVNNIVE 917

Query: 767 LHGGHVSISSSDEG 780
           LH G++   S  EG
Sbjct: 918 LHNGYLFAFSEGEG 931


>gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 589

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 153/340 (45%), Gaps = 31/340 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + EG+ V   +G I L NPAF  L+   E+    G HI  IA    R+   +D    F A
Sbjct: 260 MGEGLMVTDANGLITLVNPAFLGLFSLNES--VEGRHIIEIA----RHPVLNDA---FKA 310

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSVRAERALTEK 558
           I+ S D+  + +  TL +  +  +    +PL +       +  F ++TD  R E      
Sbjct: 311 IVASGDERVEKM--TLTMGEEKHVLTHWVPLVDNGELQGVVAVFHDITDLTRLE------ 362

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                    I+  FV +VS+ELR+P+T I G+ + L    + +   +  ++V  I + S 
Sbjct: 363 --------NIRRDFVANVSHELRTPVTVIKGYAEALIDGAMETDPERARKFVGIILSHSE 414

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ D+L L+ ++AG M L  +T+    +     + +  K     I I         
Sbjct: 415 RLAALIGDLLTLSQLEAGSMNLEKTTVRPEQVAKRAMELLQPKAARKGITIDCSGLSGAQ 474

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S +AD  RL Q+   +L NA+ ++ +G  +   AA         VK+ G  IP      +
Sbjct: 475 SVLADPGRLEQVLVNLLDNAIKYTPEGGAISFSAAVKENMVRIGVKDTGVGIPPKDLPRI 534

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F RF  V  A      G GLGLSIV+  + LHGG V + S
Sbjct: 535 FERFYRVDTARSRDEGGTGLGLSIVKHIVQLHGGAVGVES 574


>gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 1127

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 2/242 (0%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L      D  R   ALT K   L +A + K+ F+ ++S+ELR+PL +++  + LL  
Sbjct: 429 QAQLLETQRDDLERGASALTLKARELEQASQYKSDFLANMSHELRTPLNSLLILSKLLAD 488

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G+L+  Q  Y   I +S   LL L+NDILDL+ ++AG ++     + +  L  +V+Q
Sbjct: 489 NPEGTLSEDQVNYARTIQSSGNDLLALINDILDLSKIEAGHIQARPEAVSMQRLTEDVRQ 548

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                  +  +   +  D        DRQRL QI   +LSNA  F+  G   +  +A+  
Sbjct: 549 LFQPVADDRGLAFDIELDAGADLMETDRQRLEQILKNLLSNAFKFTESGKVKLSISAQPG 608

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F+V + G  I  +  K VF+ F        RR  G GLGLSI      L GG + +
Sbjct: 609 DRIAFAVSDTGIGISPEQQKGVFDAFQQADGTISRRYGGTGLGLSISRELARLLGGRIRL 668

Query: 775 SS 776
            S
Sbjct: 669 ES 670


>gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 458

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 173/365 (47%), Gaps = 35/365 (9%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           TV  D+ T+ N    +    +D +++GV     +G++ L NPA   ++  E    +P   
Sbjct: 104 TVITDITTEKNRARAI----LDSMADGVIALDREGKVLLVNPAVEDIFAIE----NPADQ 155

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNA 536
           ++NI      Y  E     LF A+        + +   L++L+     V    + PL ++
Sbjct: 156 VKNILGIIRNYELEQL---LFHAL-----KRNEPMVKVLKILTSEEPRVFRVHLTPLRSS 207

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T          V   R +T++    RK ++++  FV +VS+ELR+PLT+I GF   L+T
Sbjct: 208 DT-----KTEGIVAVLRDITDR----RKLEQMRTEFVANVSHELRTPLTSISGF---LET 255

Query: 597 SKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              G+L   +   +++E++S  +  L  L+ND+L+L+ ++      N+  + + +L++ V
Sbjct: 256 LLDGALEEPEIARRFLEHMSDETERLTRLINDLLNLSNIEDRQFVPNFQPVDMAELIHRV 315

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                 +  E  + + V     L   + D   L+Q+ + ++ NA+ ++     + +KA  
Sbjct: 316 APVYEPRAREKGLTLMVTLSPNLPPVIGDEDLLMQVLTNLIDNAIKYTPAKGKIEIKARA 375

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +    V + G  IP +    +F RF  V  A   +  G GLGLSIV+  +  HGG +
Sbjct: 376 SEQEMKVIVTDTGIGIPTESLARIFERFYRVDKARSREMGGTGLGLSIVKHIVERHGGSL 435

Query: 773 SISSS 777
            ++S+
Sbjct: 436 EVTST 440


>gi|315918685|ref|ZP_07914925.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313692560|gb|EFS29395.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 417

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 142/268 (52%), Gaps = 29/268 (10%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +E+L    + Y I PL   +  L                +K E L   D +K++F+ +
Sbjct: 163 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 204

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GF+ LL  +      S++ +Y++ +  ++ +LL L++DILDL+ ++A
Sbjct: 205 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 261

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693
           G     Y+ + +N+  +E+ +S+  K+ +    +++I +          D+ R  Q+ S 
Sbjct: 262 GTFNFVYTNVDVNETCSEIIKSMGMKVGKG---VELILEEPFPECYIYTDKNRFTQVISN 318

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NA+ F+ +GS  +      +    F V++ G  IPE+  KSVF RFV      Q  G
Sbjct: 319 FINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 376

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781
            GLGLSI +S ++  GG + + S+ EGV
Sbjct: 377 TGLGLSICKSIVSQMGGEIGVEST-EGV 403


>gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 641

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 138/239 (57%), Gaps = 5/239 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E L++ D +K+  +  VS+ELR+PLT+I G+ +L+    +G++N  Q + ++   
Sbjct: 396 LKESYEELKELDNLKSDLIAIVSHELRTPLTSIKGYVELVLDGTMGTINESQRKCLQVAD 455

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   L  L+  +LDL+ ++ G +++    + + D +++V + +     E NI++K   D
Sbjct: 456 DNIIRLRRLIESMLDLSKIERGELEMYREAMNVKDTVSDVIEYLTPLATEKNIKLK--QD 513

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            K     AD+ R+ Q+F+ ++ NA+ FS +  S +I+    +NGD   +VK+NG+ IP+ 
Sbjct: 514 IKDLLINADKDRITQVFTNLIENAIKFSPANESIMIIGKETENGDVHITVKDNGAGIPKK 573

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +F++F  V ++ + ++ G GLGL++ +S I  HGG + + S     +T +  +P+
Sbjct: 574 DLEKIFDQFYQVDSSTKRKKGGSGLGLAVCKSIIQAHGGTIWVESELGRGSTFHIVLPA 632


>gi|17230375|ref|NP_486923.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17131977|dbj|BAB74582.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 1131

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 16/270 (5%)

Query: 525 VLEYSIIPLPNAQTM--LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +L+ + + LPN   +  +   +VT+  +  + L  KN  L + + +K+ F+  +S+EL++
Sbjct: 373 LLDNTDLKLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKT 432

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT ++G + LL   +LG LN +Q++Y   I  S   L+++VNDILDL  ++ G M+L  
Sbjct: 433 PLTAVLGLSRLLVDQQLGELNERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTP 492

Query: 643 STI----VLNDLLNEVKQ--------SIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
             +    V +  L+E K         S      ++     +  +  L   VAD  RL Q+
Sbjct: 493 VPVSIRAVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSMELDLDQIVADELRLRQM 552

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
              +LSNA  F+     + L+ +   G   F+V + G  IPE     +F +F  + N   
Sbjct: 553 LVHLLSNAFKFTEISGEIGLRVSHWEGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLT 612

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            Q  G GLGL +  +   LHGG VS  S +
Sbjct: 613 RQFEGTGLGLVLTRALARLHGGDVSFLSRE 642


>gi|153004716|ref|YP_001379041.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028289|gb|ABS26057.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 1111

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 133/266 (50%), Gaps = 14/266 (5%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L D  L   + P+  A   L  V +     A R +TE+    ++ +E K  FVQ +S+EL
Sbjct: 379 LLDRTLSSIVSPVAEADGRLAGVAI-----ALRDVTEQ----KRLEERKEEFVQVMSHEL 429

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           RSPLT++ G  DL+ +   G L  KQ++Y+     S+  L  LV+D+LDLA +  G +++
Sbjct: 430 RSPLTSVTGALDLVLSGLAGQLEPKQARYLRMARESTEKLNGLVDDLLDLARLAKGKLQM 489

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 L++L+    +       E    + V +       VAD  R+ Q+ S +L+NA+ 
Sbjct: 490 EPEVTSLDELVRATVERYQPAAAERGQEVAVETPPASVRMVADPARVGQVLSNLLTNAIK 549

Query: 701 FSSKGSTVILKAARD---NGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQR-RGVG 755
           F+ + S + ++  R     G    SV N G +I E   + +F +F  + + R +R RG G
Sbjct: 550 FAPENSVIRVRLFRSPALPGMLGLSVWNAGEAISEPDLERIFEKFEQARSDRNRRVRGTG 609

Query: 756 LGLSIVESFINLHGGHVSISSSDEGV 781
           LGLSI    +  HGG +   S  +GV
Sbjct: 610 LGLSICRGIVEAHGGAIWAESPGDGV 635


>gi|87311452|ref|ZP_01093572.1| sensor histidine kinase/response regulator [Blastopirellula marina
           DSM 3645]
 gi|87285864|gb|EAQ77778.1| sensor histidine kinase/response regulator [Blastopirellula marina
           DSM 3645]
          Length = 1006

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 131/248 (52%), Gaps = 5/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R + +L  +   L +A   K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q
Sbjct: 305 DLARTKLSLQHQAADLERASRYKSDFLANMSHELRTPLNSSLILAKLLADNPQGNLSEEQ 364

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++ + I ++   LLNL++DILDL+ ++AG M+L    + +  L++EV +++     +  
Sbjct: 365 VKFAKTIQSAGNDLLNLISDILDLSKIEAGQMELRLEQLRVQKLIDEVSRTMQPLARQKE 424

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +R +  I+         DRQRL Q+   +LSNA+ F+ +G   +      N     +V +
Sbjct: 425 LRFETQIAPDCPKIIFTDRQRLEQVLKNLLSNAIKFTEQGEVKLSVTPLSNQRLALAVSD 484

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I E+  + VF  F    S++HR +  G GLGLSI + F  L GG + + S     +
Sbjct: 485 TGIGISEEQQQIVFEAFRQADSSSHR-KHGGTGLGLSISKEFSRLLGGELRLESKPGDGS 543

Query: 783 TINCRIPS 790
           T    IP+
Sbjct: 544 TFTLIIPA 551


>gi|218780204|ref|YP_002431522.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761588|gb|ACL04054.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 917

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 129/255 (50%), Gaps = 6/255 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T+    E+AL  +N  L + +++K+  +   S++L+SPL  I G+  L+K +   +
Sbjct: 658 MADITERRNLEKALESQNIKLERLNQLKSDLMAVTSHDLKSPLNVIAGYAGLIKETAGFA 717

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                ++Y++ I  S   ++  +  ILD   +++G + +    + LN+LL E  +++AT 
Sbjct: 718 SPETIAKYLDNIIFSVNRMVKFIGQILDAQKIESGKLDVEMEPLFLNELLQEHVENMATA 777

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
           +   + RI     G      AD +R++Q+F  +LSNA+ FS  G  V +    D GD + 
Sbjct: 778 LQNGDKRIIFQDKGGRRKVNADPERMIQVFDNLLSNALKFSPDGGAVEVHYKDDGGDRVE 837

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG-----QRRGVGLGLSIVESFINLHGGHVSIS 775
             + + G  IPE   + +F+R+     +G     +  G GLGL I    + +HGG +S+ 
Sbjct: 838 IFISDEGPGIPESDMEKIFDRYFQVKKQGTHSTERTYGSGLGLYISREILRMHGGSISVR 897

Query: 776 SSDEGVTTINCRIPS 790
           +  EG       +P+
Sbjct: 898 NQAEGGCQFILSLPA 912


>gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 705

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 181/395 (45%), Gaps = 53/395 (13%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E KY ++        ++ +EG+    PDGR   +NPA   +   +    SP   I N+  
Sbjct: 303 EAKYRSI-------FENAAEGICQTTPDGRYISANPALARILGYD----SPEDLIANLTD 351

Query: 486 TCSRYYNESDGWDLFAA------IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             ++ Y +      F A      +I+ F+ +     GT   +S+           NA+ +
Sbjct: 352 VSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISE-----------NARAV 400

Query: 540 L-----------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                       T  ++T+   A  AL    EA   A+  K++F+ ++S+ELR+PL  II
Sbjct: 401 FDAMGELVCYEGTVEDITEGKTAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAII 460

Query: 589 GFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           G++++L  +  +LG  +      +E I  +   LL L+NDILD++ ++AG M L      
Sbjct: 461 GYSEILSEEAEELGYEDIVPD--LERIYTAGKNLLTLINDILDISKIEAGRMDLFLEAFD 518

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++ LL  V  +    M +NN  + V     +G   AD  ++ QI   +LSNA  F++ G 
Sbjct: 519 ISSLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTNGK 578

Query: 707 TVI-------LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             +       L  ++++G  + F V + G  + ++  + +F  F        RR  G GL
Sbjct: 579 IKLEVSRVSSLPYSQESGSVLEFKVHDTGIGMSQEQQEQLFQPFTQGDASTTRRYGGTGL 638

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL+I + F  + GG++ + S+    +T    IP++
Sbjct: 639 GLAISDRFCQMMGGNIQVESTLGEGSTFKVVIPTR 673


>gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 611

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 3/249 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            VTD  + E AL     A  +AD  K  F+  +S+ELR+PL  IIGF++++       L+
Sbjct: 325 EVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSEMIVQEATLPLD 384

Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++ +Y + I+ S   LL++VN ILD++ +++G  ++        ++L      +A K 
Sbjct: 385 ATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLNGCNLLALKA 444

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +N I +       L   + D +   QI   ++SNA+ F+ +G  V + A  +    +  
Sbjct: 445 RDNGIELVTRVPENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTISARVEGARMVLR 504

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I ++  K + + F       QRR  G GLGLSIV++ + LH G + + S  E 
Sbjct: 505 VMDDGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVELHRGEIDVQSKVEE 564

Query: 781 VTTINCRIP 789
            TT+   +P
Sbjct: 565 GTTVTVMLP 573


>gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1199

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 14/245 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LTE  +AL+ A E K  F+ ++S+E+R+P+  +IG T LL+ S    LN +Q QYVE 
Sbjct: 679 RKLTE--QALQDATEAKMQFLANMSHEIRTPMNGVIGMTGLLQES---GLNPEQQQYVEV 733

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KV 671
           I AS  +LL+++NDILD + ++AG ++L  +   ++ +LNEV   ++T+     + + + 
Sbjct: 734 IRASGDLLLSIINDILDFSKMEAGRLELEQTPFDVSMILNEVIDLVSTQAQSKGLALERH 793

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
           +   +      D  RL QI   +L NA+ F+  GS V L+A  + G       +  V++ 
Sbjct: 794 LELAQPCYLKGDVTRLRQILLNLLVNAIKFTESGS-VTLQARVEPGQDRRSMLLCQVRDT 852

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E   +++F+ F        R+  G GLGL+I      L  G + + S     TT 
Sbjct: 853 GIGISEQQLETLFDPFTQADASITRKYGGTGLGLAISRHLTQLMEGEIGVDSHQGQGTTF 912

Query: 785 NCRIP 789
              IP
Sbjct: 913 RLSIP 917


>gi|224369669|ref|YP_002603833.1| two-component hybrid sensor and transmitter protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692386|gb|ACN15669.1| two-component hybrid sensor and transmitter protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 617

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 4/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+   E   KA   KN F+ ++S+E R+PL  IIGF+  +  S   +L+ ++ +++  IS
Sbjct: 277 LSLAKEEAEKASRAKNVFLANMSHEFRTPLNAIIGFSSHIAQS--AALDPEERKHLSIIS 334

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+N +L ++ ++AG  ++N  T  L DLL ++    + K  E  +   +I  
Sbjct: 335 NSGNHLLTLINSVLAMSKIEAGKTEVNERTTNLQDLLADIHAMFSLKAAEKALSFDLICH 394

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + V  D  +L QI   +++NA+ F+++G   ++    D  + +F +++ G  + +D
Sbjct: 395 PDLPAIVQVDDVKLWQILINLINNAIKFTARGGVKVIVEKNDTPEILFKIRDTGPGMAKD 454

Query: 734 MCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F+ FV  A  +G   G GLGL+I  S+I+L GG V + S     +T    IP K
Sbjct: 455 EQAMIFDPFVQLATDQGINEGTGLGLAICRSYIHLMGGEVKVDSVRGKGSTFFFSIPLK 513


>gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
 gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
          Length = 819

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 187/381 (49%), Gaps = 40/381 (10%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           EN  V+ DL      L      + + + +G AVF    R+ L+NPA+ S++   E+ ++P
Sbjct: 62  ENFQVRSDLRRAEQRLWT----SFETIEDGFAVFDASRRLVLANPAYVSIFDGLED-VAP 116

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-SDSVLEYSIIPLPN 535
           G     +   C+              II +    R+     +E+  + + +E +++ L N
Sbjct: 117 GIGYAELLRLCAEE-----------GIIDTEGLSRQDWCAQMEMRWNGAQIEPAVVRLWN 165

Query: 536 AQTMLTF-------------VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             ++                +N+TD+++ E+ LT        A+  K++F+ ++S+ELR+
Sbjct: 166 GFSIKLVERRGEDGDIVSLCLNITDTIKREQELTLARTRAEAANRAKSAFLANMSHELRT 225

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  ++  ++LL  S   +L+ +Q+ YVE I  S   LL ++ND+LD + ++A  ++L+ 
Sbjct: 226 PMNGVVAMSELLNES---ALDEEQALYVETIRKSGEALLVIINDVLDYSKMEAEKLQLHP 282

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
           +   L  L+++V         E ++ + +  D  L S F+ D+ RL Q+ + +L NA+ F
Sbjct: 283 APFDLERLMHDVVMLTKPTAQEKSVDLMLDYDIFLPSHFIGDQGRLRQVMTNLLGNAVKF 342

Query: 702 SSKGSTVI--LKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           + +G  +I  +    ++G  + I S+++ G  I  +M   +F  F        R   G G
Sbjct: 343 TLEGHVLIRVIGMPPEDGTQEIIVSIEDTGIGIAPEMIDHIFGEFNQAEDERNRAFEGTG 402

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I +  I+L GG + + S
Sbjct: 403 LGLAITKQLIDLMGGEIWVDS 423


>gi|319900185|ref|YP_004159913.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319415216|gb|ADV42327.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 982

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 130/237 (54%), Gaps = 12/237 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +VTD  RA     E       +D++K++F+ ++S+E+R+PL +I+GF+D+L T  L 
Sbjct: 743 TLTDVTDMHRARLKAEE-------SDQLKSAFLANMSHEIRTPLNSIVGFSDILVTEDLS 795

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + ++  + + I +++  LL L+NDILDL+ +++G ++   +   + +LL E+  S   
Sbjct: 796 PEDKRE--FGKIIRSNNEQLLTLINDILDLSKLESGCVEFTETDFGVEELLGEIFSSYQP 853

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +  E   ++  +  GK      DRQRL+++ +  ++NA+ ++S+GS  +     D G   
Sbjct: 854 RFRELPTKLVYVPKGKSIRLHQDRQRLIEVLTNFVNNAIKYTSEGSITLDYEKVDQG-VK 912

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F+V + G  +P +    +FNRF         +G GLGLSI +   +   G + + S+
Sbjct: 913 FTVTDTGVGMPPEALDKIFNRFEKLG--SMVKGTGLGLSICKMLADRMHGKIGVDST 967


>gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1290

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 135/268 (50%), Gaps = 15/268 (5%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEA----------LRKADEIKNSFVQHVSYELRSPL 584
            N + +  F + TD    + A+ E+ +A          L +A+ +K+ F+  VS+ELRSPL
Sbjct: 879  NGRILKWFGSCTDIHDQKLAIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPL 938

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              I+G+  LLK+ KL +L  K +Q +E I  ++ +   L++D+LD++ +  G + LN  T
Sbjct: 939  NPILGWAKLLKSRKLDAL--KTNQALEVIERNAKLQARLIDDLLDVSRILRGKLSLNVCT 996

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            + L   +    +++       +I I+      +     D  RL Q+   +L+NA+ F+ +
Sbjct: 997  VDLVTTIEAALETVRLTAESKSIHIQTELTSHVCRVEGDPNRLQQVVWNLLTNAVKFTPE 1056

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
            G  + +   R        V++ G  I  D    VF RF        R+  G+GLGL+IV 
Sbjct: 1057 GGQIEVSLERVGSLAHIQVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVR 1116

Query: 763  SFINLHGGHVSISSSDEGV-TTINCRIP 789
              + LHGG V ++S  EG+ TT   ++P
Sbjct: 1117 HLVELHGGAVQVTSPGEGLGTTFTVKLP 1144


>gi|255013294|ref|ZP_05285420.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 547

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 136/231 (58%), Gaps = 13/231 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D +K++F+ ++S+E+R+PL  I+GF+ LL  S       ++ +Y+  I +S+  LL L
Sbjct: 322 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 378

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681
           + DILD++ +++G M+  Y+T+ L+++    +Q+ A ++  +   +KVI  SDG     V
Sbjct: 379 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAPD---VKVIFESDGNDYCIV 435

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +++ RL Q+ +  LSNA+ F+S GS        D+G +++ V + G  I ++   S+FNR
Sbjct: 436 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 494

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           FV  N+    ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 495 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 542


>gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 1126

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 136/632 (21%), Positives = 271/632 (42%), Gaps = 61/632 (9%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----KNTETEGIVFQKAIG--ESRK 242
           N   + + + + L   V+ RD    +++AN  Y+       ++  G+   +  G  E   
Sbjct: 186 NEGDLLRTIMEDLPVAVFVRDDKHRLVYANRYYETFGGYDRSQVLGMTEHEMFGPEEGEA 245

Query: 243 LFKE-----------EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
           +++E           EI+ +M             V+ +   + ++Y    V+ SF +   
Sbjct: 246 IYQENRLALEDGLSKEIESQMPGRDGRIHPLISRVNRVVTADGRTY----VVGSFSDIAP 301

Query: 292 AIDVSK---EITVNDQLTHT--YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
             +  K   E    ++  H     IL +L + + I D +  +   N  F  +WE+ L   
Sbjct: 302 LKEREKALIEAKKQEEALHRDIESILRSLPIGVLILDNDHRILSANDEFYSIWELPL--- 358

Query: 347 ATNP-SNDELLEFLRSANKLPEQLNWKTWKENIFSVYK------SSETHKDTWHLPNGQT 399
             +P      ++ +R  N+L      +T  E I++  K        E  +  W       
Sbjct: 359 -DDPFDGRHFVDVIRRNNELGRYDGTQT-AEEIYAFRKHLFETDEPEPIELGWAGGKSVI 416

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQ--GETIDH----LSEGVAVFGP 452
                 SN R   +  + +++   + E + + T   ++  GE +      +S+G+A+   
Sbjct: 417 FDSRRISNDR--ILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLAIV-Q 473

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           DG IK+SN A  ++ +     +  G     +   C+   +  D  D       +    R+
Sbjct: 474 DGIIKMSNEAMAAILQIPPAYIEAGQGWLGMFEFCAARGDFHDAADEILQGWRANIAARQ 533

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +     +  +  +    +       +  F +VT+    E  L         AD  K+ F
Sbjct: 534 PISTVFHVGGERWVNMDAMVSEGQHWVALFTDVTELKSREEELRHLLSRAEAADRAKSEF 593

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  ++G  +LL  +   +L+++Q  +V+ I  S   LL ++NDILD + 
Sbjct: 594 LANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFVDIIVKSGNALLTIINDILDFSK 650

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIF 691
           +DAG MKL  +   + + + +V   +++   E NI + V +   L  + + D  R  QI 
Sbjct: 651 IDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIV 710

Query: 692 SKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNA 746
           + ++ NA+ F+ +G   +    +AA   G+ + S++  + G  IP +  +SVF++F    
Sbjct: 711 TNLVGNAVKFTERGHVFVDVGFEAAA-GGEIMASIRIEDTGIGIPAEKLESVFDKFSQVD 769

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGL+I    ++L GG++++ S
Sbjct: 770 ASSTRRHEGTGLGLAITAGLVDLFGGYLNVES 801


>gi|154252152|ref|YP_001412976.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156102|gb|ABS63319.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 798

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 4/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQ 608
           RAE  L +  E    A+  K  F+ ++S+ELR+PL  IIGF++++     G L S +  +
Sbjct: 539 RAEEGLRQATETAEMANRAKTKFLANMSHELRTPLNAIIGFSEIMSQEMFGPLGSDRYRE 598

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  S   LLN+++DILD++ ++AG   L    I +  +L    + +  +  E    
Sbjct: 599 YTNDIHGSGRHLLNVIDDILDISKIEAGRYVLEEDEIDMAHVLKWSVEMMRARTLEKRQN 658

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNG 727
           + +     + +  AD++ + QI   +LSNA  F+     + L  +R D GD + SV ++G
Sbjct: 659 VNLHLPEAIPNVRADQRAMRQIMLNLLSNASKFTPAEGRIDLNVSRNDAGDLMVSVADSG 718

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +    V   F  V +    Q  G GLGL I +S I +HGG  ++ S+    TT  
Sbjct: 719 IGIPRNKLDEVLEPFGQVDDTSARQHGGTGLGLPITKSLIEMHGGSFTLESTLGAGTTAT 778

Query: 786 CRIPS 790
              P+
Sbjct: 779 MIFPA 783


>gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
 gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
          Length = 1491

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 551  AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            AER   L+  N+ L +A   K+ F+ ++S+ELR+PL  I+  ++ +     G LN +Q  
Sbjct: 963  AERTEDLSRANQELARAVRAKDDFLANMSHELRTPLNAILALSEGMLEQLRGPLNERQIA 1022

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             +  I +S   LL L+NDILDL+ ++AG M L    I+++D+       I  +  +   +
Sbjct: 1023 ALRNIESSGRHLLALINDILDLSKIEAGRMDLQIDQILVSDVCAASMIFIKEQASKKQQK 1082

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNN 726
            I +I +     F AD++RL Q+   +L+NA+ F+  G  +  I+KA    G    +V + 
Sbjct: 1083 INLIQEESGLRFYADQRRLKQMLVNLLTNAVKFTPVGGQIDLIVKADASQGVLAITVADT 1142

Query: 727  GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G  I ++  + +F  F+   +    Q  G GLGL++V     LHGG VS+ S+
Sbjct: 1143 GIGISDEEMQRLFKPFIQLDSGLTRQHEGTGLGLALVRRLAELHGGSVSLEST 1195


>gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 681

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 132/237 (55%), Gaps = 2/237 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  + L++AD+IK+ F+ ++S+ELR+PL+ II  +++LK    G LNSKQ ++V  I 
Sbjct: 430 LREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGELNSKQLKHVTNIL 489

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+L+N++LD++ ++AG MKL      ++D+  E    + +  +  NI I +  +
Sbjct: 490 NSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNIEINLNIE 549

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   D  +L QI   ++SN++ F+ +G  + +   ++       +++NG  I ++ 
Sbjct: 550 PSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYMKLIIEDNGIGIKKED 609

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            K +FN F  V N++  +  G GLGL + +  + +HGG + + S+    T I   IP
Sbjct: 610 QKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKIIITIP 666


>gi|221641014|ref|YP_002527276.1| hypothetical protein RSKD131_2915 [Rhodobacter sphaeroides KD131]
 gi|221161795|gb|ACM02775.1| Hypothetical Protein RSKD131_2915 [Rhodobacter sphaeroides KD131]
          Length = 520

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 16/292 (5%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L  + L+  +   +        ++W     G+++WAN +Y +          K +   R 
Sbjct: 145 LSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLREA-------AKRLPPDRD 197

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGIAID----VSK 297
           L       R+   +A  +        +E  G ++ + +    +  G    A+     V  
Sbjct: 198 L--SWPLPRLFDRAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E T+ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS    LE
Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            LR    +PE  ++ +W+  I  + K++ +  + DTW LP+GQT  VI   +P G    M
Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYADTWSLPSGQTYRVIGRPHPNGALALM 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           FE+++ ++    +Y   +++    +D + + +AVF P G + ++N A+ +LW
Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNTAYGALW 427


>gi|253565168|ref|ZP_04842624.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946633|gb|EES87010.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 565

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 149/260 (57%), Gaps = 16/260 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F ++T+ ++ ER L E  E   +++ +K++F+ ++S+E+R+PL  IIGF+DL+  + 
Sbjct: 307 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 366

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ +Y+  +++++ +LL L++DILDL+ ++AG M  +Y+   +N+L+    + I
Sbjct: 367 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----EDI 419

Query: 659 ATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713
             +M + N R +V    ++ + G  +  DR RL Q+   +++NAM F+S+GS T+  +  
Sbjct: 420 CLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLT 479

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           R   +  F VK+ G  IP D    VF RFV  N      +G GLGL+I    I   GG +
Sbjct: 480 RQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---VKGTGLGLAICRVIIERLGGTI 536

Query: 773 SISSSDEGVTTINCRIPSKE 792
            + + +   +    R+P +E
Sbjct: 537 GVETREGKGSCFWFRLPVRE 556


>gi|114797754|ref|YP_761588.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
 gi|114737928|gb|ABI76053.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
          Length = 821

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 125/240 (52%), Gaps = 3/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVE 611
           R  +E+ E   +A   K++F+ ++S+ELR+PL  +IGF++++     G L      +Y +
Sbjct: 566 RKYSEEKEKAERAALAKSAFLANMSHELRTPLNAVIGFSEIMTNELAGPLGDPSYKEYAK 625

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL+++NDILD+A ++AG M ++   I   D ++   + I  K  E  I + +
Sbjct: 626 DILMSGQHLLDMINDILDMAKIEAGKMTISPQPIDPIDPVDAAMRMIRRKAEEKAIDLVL 685

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            ++  L    AD + + Q+   +LSNA+ F+ +  T+ ++  +   D  F V + G  IP
Sbjct: 686 EAEDNLPDIDADHRAIRQMMLNLLSNAIKFTDRSGTITVRVEQRGTDIYFGVTDTGIGIP 745

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +   F   A    R   G GLGLS+ +SF  +HGG + +SS     TT+   +P
Sbjct: 746 AEDLPRLAQPFEQVAKTKDRNHEGTGLGLSLTKSFAEMHGGRMLLSSIYGEGTTVAFVLP 805


>gi|307725772|ref|YP_003908985.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307586297|gb|ADN59694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 1198

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 129/236 (54%), Gaps = 13/236 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RA+  L    E L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q +
Sbjct: 469 LRAQDDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQVR 528

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHEN 665
           Y E I AS++ LL L+NDILDL+ V+AG + +   T+ ++  L    E+ + +A   H  
Sbjct: 529 YAETIHASNSDLLVLINDILDLSKVEAGQVSVELETVSIDATLQSLEELFKPMAGAKH-- 586

Query: 666 NIRIKVISD---GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + ++ D   G   + V+D QR+ QI   +LSNA+ F+ +G   +  +  D+G     
Sbjct: 587 ---LSLVFDRLPGAPETIVSDGQRVTQILRNLLSNAVKFTERGEVALSVSPADDGMLRID 643

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V+++G  I  D  + +F  F     +   Q  G GLGLSI   F  L GG ++++S
Sbjct: 644 VRDSGIGIAADKLEMIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVAS 699


>gi|218264827|ref|ZP_03478515.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221769|gb|EEC94419.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii
           DSM 18315]
          Length = 794

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  +   ++D +K++F+ ++S+E+R+PL  I+GF++LL    +     ++ +Y+ 
Sbjct: 409 EIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLLT---IAENEEERDEYIN 465

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS+++ +LL L+NDILD+A ++AG ++   S I +N LL++++QS   K  E  +++  
Sbjct: 466 IISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPE-GVQVSF 524

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        ++D+ RL Q+ +  ++NA+ F+ +GS       +D+   +F VK+ G  I 
Sbjct: 525 VEKLPYCIIMSDKNRLAQVMTNFINNAIKFTKEGSIRFGYEHKDD-KLLFYVKDTGCGIE 583

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +    VFNRFV      Q  G GLGL+I +  I   GG + + S
Sbjct: 584 PEKKDLVFNRFVKLNSFAQ--GTGLGLAICQMIIKKLGGEIGVES 626


>gi|146275719|ref|YP_001165879.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans
            DSM 12444]
 gi|145322410|gb|ABP64353.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans
            DSM 12444]
          Length = 1782

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 132/257 (51%), Gaps = 16/257 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A RA+ EK E L    + K+ F+ ++S+ELR+PL +++  + LL  ++ G+LN KQ+++ 
Sbjct: 1210 ARRAVEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKLLADNQQGNLNEKQTEFA 1269

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  + T LLNL+NDILDL+ +++G + ++   + +  +   V+++      E  +  +
Sbjct: 1270 RTIHGAGTDLLNLINDILDLSKIESGTVSIDIGDMSIPGMKQHVERTFRQVASEKGLAFE 1329

Query: 671  VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN--------GDFI 720
            +  D  L  S   D +RL QI   +LSNA  F+++G  T+ ++ AR          GD  
Sbjct: 1330 IDFDDSLPASIQTDEKRLQQIVLNLLSNAFKFTARGRVTLNVRPARHGWSPTHPVLGDLD 1389

Query: 721  ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                 SV + G  IPED  K +F  F        R+  G GLGLSI      L GG + +
Sbjct: 1390 RALEISVSDTGIGIPEDKQKLIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGELQV 1449

Query: 775  SSSDEGVTTINCRIPSK 791
             S     +T    +P K
Sbjct: 1450 RSVPGEGSTFTLYVPMK 1466


>gi|237716423|ref|ZP_04546904.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408024|ref|ZP_06084572.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294643626|ref|ZP_06721428.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294808045|ref|ZP_06766818.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229444070|gb|EEO49861.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354832|gb|EEZ03924.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292641003|gb|EFF59219.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294444686|gb|EFG13380.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 810

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 142/268 (52%), Gaps = 29/268 (10%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +E+L    + Y I PL   +  L                +K E L   D +K++F+ +
Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GF+ LL  +      S++ +Y++ +  ++ +LL L++DILDL+ ++A
Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693
           G     Y+ + +N+  +E+ +S+  K+ +    +++I +          D+ R  Q+ S 
Sbjct: 655 GTFNFVYTNVDVNETCSEIIKSMGMKVGKG---VELILEEPFPECYIYTDKNRFTQVISN 711

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NA+ F+ +GS  +      +    F V++ G  IPE+  KSVF RFV      Q  G
Sbjct: 712 FINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 769

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781
            GLGLSI +S ++  GG + + S+ EG+
Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGI 796


>gi|298481294|ref|ZP_06999487.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272498|gb|EFI14066.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 810

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 142/268 (52%), Gaps = 29/268 (10%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +E+L    + Y I PL   +  L                +K E L   D +K++F+ +
Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GF+ LL  +      S++ +Y++ +  ++ +LL L++DILDL+ ++A
Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693
           G     Y+ + +N+   E+ +S++ K+ +    +++I +  L       D+ R  Q+ S 
Sbjct: 655 GTFNFVYTNVDVNETCAEIIKSMSMKVSKG---VELIFEEPLPECYLYTDKNRFTQVISN 711

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NA+ F+ +G   +      +    F V++ G  IPE+  KS+F RFV      Q  G
Sbjct: 712 FINNALKFTQQGCITLGYKQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKLNTFVQ--G 769

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781
            GLGLSI +S ++  GG + + S+ EGV
Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGV 796


>gi|239908609|ref|YP_002955351.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798476|dbj|BAH77465.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 655

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 11/257 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++TD  R E  L    E    A++ K+ F+ ++S+E+R+PL  I+    LL T+   SL
Sbjct: 254 VDLTDRRRMEHDLRAAKEGAEAANQAKSEFLANMSHEVRTPLNGILSTLQLLGTT---SL 310

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +++Q + +     SS  L  L++DILDL  ++AG +    S      L   V +  A   
Sbjct: 311 DAEQQECLFAAIKSSHRLTQLLSDILDLTKIEAGKLPCRESRFEFGQLRRAVLELFAKAA 370

Query: 663 HENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDN 716
            + ++  +  ISD      V D  RL QI   ++ NA+ F+ +G     +  +  A  D 
Sbjct: 371 SDKDVGLVFTISDDMPRWLVGDEVRLRQILFNLVGNAVKFTLQGQVTVEAKALPSAGGDR 430

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +F V + G  IP+D  + VF  F  +  ++  + +G GLGLSIV   + + GG +++
Sbjct: 431 LHVLFVVSDTGIGIPDDQLQYVFEPFSQIEGSYTRRFQGAGLGLSIVRKLVRMLGGELAV 490

Query: 775 SSSDEGVTTINCRIPSK 791
             ++ G TT+ C IP K
Sbjct: 491 DGTEGGGTTMYCSIPLK 507


>gi|94266210|ref|ZP_01289919.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93453217|gb|EAT03675.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 5/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R ER L E  +A + A++ K++F+ ++S+ELR+PL  IIG++++L         
Sbjct: 537 DITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEEHGL 596

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              ++ ++ I  ++  LL L+N++LD +  ++G + L      L++LL  V   I   + 
Sbjct: 597 EGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELLAAVVDIIRPLLP 656

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI- 720
           E   R+ V ++ +LG+   D  RL QI   +LSNA  F+ KG   +   +  RD G+++ 
Sbjct: 657 ERENRLLVEAEEELGTIRTDGTRLRQILYNLLSNAAKFTEKGFITLRTRRLMRDGGEWVE 716

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             +++ G  I E+  K +F  F        RR  G GLGL+I   F  + GG +++ S+ 
Sbjct: 717 IDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVSTP 776

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 777 GQGSTFTVSLP 787


>gi|311279881|ref|YP_003942112.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308749076|gb|ADO48828.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 900

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 32/291 (10%)

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           +E+ GW L    I +      SLQG+ +                 + + T  ++T+   A
Sbjct: 216 DETYGWMLIQGQIMTL-----SLQGSAQ-----------------KVIGTLQDITEQKNA 253

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYV 610
           E A  +  EA + A++ K+ F+ ++S+E+R+P+  I+G T L L+T     L + Q  Y+
Sbjct: 254 EAASRQAVEAAKAANQAKSEFLANMSHEIRTPMNGILGMTQLCLETD----LTADQRDYI 309

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S++ LLN++N+ILD + ++AG + LN     +  L+ E+ + +  K  E NI + 
Sbjct: 310 NMAHSSASALLNIINEILDFSKIEAGKLTLNAEDFAIRPLIQEITRPLMPKFSEKNIELL 369

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNG 727
           V I          D  RL Q+ + ++ NA+ F+  G  V  IL         +FS+ ++G
Sbjct: 370 VDIHPDVAIEIHGDPLRLRQVLTNLIGNALKFTLHGEVVLRILPVPDALHRLLFSLHDSG 429

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             IPED  K +F  F    +   R+  G GLGL+I    +   GG + ++S
Sbjct: 430 IGIPEDKQKVIFESFSQADNSTTRKYGGTGLGLTISSRLVEKMGGELHLTS 480


>gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
 gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
          Length = 882

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 18/245 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+   AE AL +  +A  +A+  K+ F+ ++S+E+R+P+  +IG T LL+   L  LN
Sbjct: 479 DVTERKEAEEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLE---LTELN 535

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q +YV  + +    LL L+NDILD++ ++AG+M L      L   + +V  +      
Sbjct: 536 AEQREYVSSLKSCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAAR 595

Query: 664 ENNIRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714
           E  +R++V     + D  LG    D+ R  QI   +L NA+ F+ KG   I    L+   
Sbjct: 596 EKALRLQVEVAPDVPDAVLG----DQLRFKQILLNLLGNAVKFTEKGGVTITVTLLEQPV 651

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
               F  +V++ G  I  +  + +F  FV       R+  G GLGLSI      + GG +
Sbjct: 652 APPLFQMAVRDTGVGIAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSI 711

Query: 773 SISSS 777
           SI S+
Sbjct: 712 SIEST 716


>gi|148251757|ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146403930|gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 745

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 13/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD    ERAL E  +    A+  K+ F+   S+E+R+PL  I+G + LL  ++   L 
Sbjct: 209 DVTDRTETERALAEARDQANAANRAKSRFLAMASHEIRTPLNGILGMSGLLLETQ---LT 265

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y + + +S   L++L+N++LD + ++AG + L      L  L+ E+ + +A +  
Sbjct: 266 PEQTTYAKAVRSSGEALMSLINELLDYSKIEAGKLALEAQPFALTALIEEITELLAPRAQ 325

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----D 718
              + I    D +L ++V  D  RL Q+   +  NA+ F+SKG   ++    + G    +
Sbjct: 326 GKQLEIAAYLDERLPTWVTGDAARLRQVLLNLAGNAIKFTSKGGVALIA---EPGIWPNE 382

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I  D  + +F  F        R   G GLGL+I +  +   GG +++ S
Sbjct: 383 ISFQVRDTGIGIAADAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRIALQS 442

Query: 777 SDEGVTTINCRIP 789
                +T    +P
Sbjct: 443 QPGAGSTFEVSVP 455


>gi|284046820|ref|YP_003397160.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283951041|gb|ADB53785.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 625

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A+ +K  F   VS+ELR+PLT I+G+ +L+      +++ +Q +Y++ +  ++  LL 
Sbjct: 367 REAERVKEEFFALVSHELRTPLTAILGYVELVLGEDGATIDEEQHRYLQIVERNAQRLLR 426

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV D+L  A V++G + L   ++ L  +  E  ++   +  +  I +       L   V 
Sbjct: 427 LVGDLLFAAQVESGALLLEPGSVDLPRVTLEAVEAARPRAEDAGITLTA-QIAPLVPCVG 485

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+   ++SNA+ F+  G  V ++ +  +G+    + + G  +P +    +F+RF
Sbjct: 486 DRDRLAQVLDNLISNALKFTPSGGQVGVRLSAADGEARIDISDTGVGVPAEEHARLFDRF 545

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              SNA      GVGLGL IV + +  HGG + + S     TT   R+P
Sbjct: 546 FRASNATTRAVPGVGLGLMIVRAIVAAHGGTIGVDSEVGVGTTFTVRLP 594


>gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 531

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 134/250 (53%), Gaps = 5/250 (2%)

Query: 548 SVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +++++R  L E N  L++ D IK+ F+ + S+ELRSPLT +I FT+LL     G LN  Q
Sbjct: 276 TLKSQREMLAETNRQLQETDRIKDEFLANTSHELRSPLTAVIAFTELLMDESSGELNDLQ 335

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV  I+ S   LL ++N  LDL+ + AG   L      +++L+ ++   +    +   
Sbjct: 336 RDYVHEINDSGRELLGMINGFLDLSKIAAGKTFLYREHFKIDELIEDIFLRMRHLFNNKG 395

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNG-DFIFSVK 724
           I ++V  +       ADR +  Q+ + +LSNA+ F++ G  V++++ + D+G D I +V+
Sbjct: 396 ITLEVARNKNQLPVWADRGKTGQVLTNLLSNALKFTTTGGKVVVESNSGDSGRDVIITVR 455

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I     + +F  F  V         G+G+GL++ +  + LHGG + +SS     +
Sbjct: 456 DTGIGIDIRDQEKIFQPFYQVDGTSTRNYGGMGIGLNLAKKLVELHGGTIRVSSQQNAGS 515

Query: 783 TINCRIPSKE 792
                +P++E
Sbjct: 516 IFTFTLPTEE 525


>gi|297563589|ref|YP_003682563.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848037|gb|ADH70057.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 723

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 127/238 (53%), Gaps = 8/238 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  E  E L + ++ + + V  VS+ELR+PL+N+ G+   L+ ++ G  +  + + +  +
Sbjct: 470 AFNEMAEHLERLEKQRRAMVSDVSHELRTPLSNLRGW---LEAAQDGVADLDR-ERMGML 525

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              + +L ++V+D+ DLA  DAG ++L+   +    L+ +V  S   ++      +++++
Sbjct: 526 VGETLLLQDIVDDLQDLALADAGKLRLSPEPVDAGALVEQVVDS--QRLRAAGAGLRLVA 583

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +      VADR RL+Q+   +L NA+  +    TV ++A R  G+ +  V + G  IP +
Sbjct: 584 EAGDVVVVADRTRLVQVVGNLLGNALRHTPAPGTVTVRARRSGGEAVVEVADTGVGIPAE 643

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF+RF        RR  G GLGL+IV + + LHGG V++ S     TT   R+P
Sbjct: 644 DLPHVFDRFWRADKSRNRRTGGSGLGLAIVRNLVELHGGSVAVESVVGEGTTFTVRLP 701


>gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 681

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 132/237 (55%), Gaps = 2/237 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  + L++AD+IK+ F+ ++S+ELR+PL+ II  +++LK    G LNSKQ +++  I 
Sbjct: 430 LREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGELNSKQLKHITNIL 489

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+L+N++LD++ ++AG MKL      ++D+  E    + +  +  NI I +  +
Sbjct: 490 NSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNIEINLNIE 549

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   D  +L QI   ++SN++ F+ +G  + +   ++       +++NG  I ++ 
Sbjct: 550 PSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYMKLIIEDNGIGIKKED 609

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            K +FN F  V N++  +  G GLGL + +  + +HGG + + S+    T I   IP
Sbjct: 610 QKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKIIITIP 666


>gi|270296316|ref|ZP_06202516.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270273720|gb|EFA19582.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 1037

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 7/240 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + E  L        +++++K++F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 652 ITERKKMETELVSAKNRAEESNKLKSAFLANMSHEIRTPLNAIVGFSGILAST---EEEE 708

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH- 663
           ++ +YV  I  ++T+LL L++DILDL+ ++AG M+   +   LN ++ E++  +  K+  
Sbjct: 709 EKQEYVSIIENNNTLLLQLISDILDLSKIEAGTMEFIDTDFELNKVMRELESLLCLKLSP 768

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E N+ +            ++R RL Q+   +++NA+ F+ +GS       +D+    F V
Sbjct: 769 EKNVTLSFEPGLPECHIHSERNRLSQLVINLVTNAIKFTQEGSIRFGYKLQDDKMLYFYV 828

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
            + G  IPED  +S+F RFV   +  Q  G GLGLSI +  +   GG++ ++S   EG T
Sbjct: 829 SDTGCGIPEDKQESIFGRFVKLNNFAQ--GTGLGLSICQMLVQHMGGNIGLTSKPGEGST 886


>gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1039

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 11/244 (4%)

Query: 542 FVNVTDSVRAER---ALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +++TD  +AE+    L E+ +A R     A+ +K+ F+  +S+ELR+PL  I+G+T LL
Sbjct: 629 MLDITDRKQAEQEREQLLEREKAARADAESANRMKDEFLATLSHELRTPLNAILGWTQLL 688

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +  K     + ++  +E I  ++  L  L+ D+LD++ +  G + L+   I L  L+   
Sbjct: 689 RNRKFDEATTARA--LETIERNTKSLAQLIEDVLDVSRIIRGTLHLSIHRIKLVPLVEAA 746

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++        I IK   D ++G  V D  RL Q+   +LSNA+ F+SKG +V ++  R
Sbjct: 747 IDTVRPAAEAKEINIKCKFDPEVGIVVGDTNRLQQVVWNLLSNAVKFTSKGGSVDVQLER 806

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                   V + G  I  +    VF RF        R   G+GLGL+IV   + LHGG V
Sbjct: 807 IESSVQIRVSDTGVGIAAEFLPHVFERFRQADSSSTRSHGGLGLGLAIVRHLVELHGGTV 866

Query: 773 SISS 776
           S+ S
Sbjct: 867 SVES 870


>gi|188992558|ref|YP_001904568.1| Putative two-component system sensor protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167734318|emb|CAP52528.1| Putative two-component system sensor protein [Xanthomonas
           campestris pv. campestris]
          Length = 292

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 44  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS+  L  +V+D+LDLA ++AG + ++     L DL   ++         +   +     
Sbjct: 104 ASTRELSEMVDDLLDLAKIEAGRVTISPGWFDLMDLFAALRGMFRPLTDASRTTLIFEDP 163

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SNA+ F+ +G   +    + +    FSV++ G  IP ++
Sbjct: 164 PVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLQGDTHVRFSVQDTGIGIPAEL 223

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             ++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 224 HDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGTVGINS 267


>gi|83643211|ref|YP_431646.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631254|gb|ABC27221.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 893

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 142/256 (55%), Gaps = 28/256 (10%)

Query: 545 VTDSVRAERALTEKNEALR--------------KADEIKNSFVQHVSYELRSPLTNIIGF 590
           V + +R+E AL +  E LR               A++ K+ F+ ++S+E+R+P+  +IG+
Sbjct: 357 VAERIRSEEALRKSEERLRAAMKHAEHLAKAADSANKAKSEFLANMSHEIRTPMNAVIGY 416

Query: 591 TDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           T+LL+    G + ++KQ  Y++ I   S  LL ++NDILDL+ V++G +++ Y+ +  + 
Sbjct: 417 TELLE----GLIHDAKQKSYLDAIKKGSRALLTIINDILDLSKVESGKLRIEYAPLDPHR 472

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-T 707
           LL +V Q  + ++ +  + ++++ D +L  S V D  RL Q+   ++ NA+ F+ +G  +
Sbjct: 473 LLQDVAQIFSARISQKKLDLRIVLDDQLPHSLVLDEVRLRQVIFNLVGNAIKFTHEGYIS 532

Query: 708 VILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
           +  KA+   GD        +V+++G  I +D    +FN F  +  +  R+  G GLGL+I
Sbjct: 533 LCAKASSIPGDDDHIELEIAVEDSGIGIAQDQQARIFNAFEQHEGQSNRQYGGTGLGLAI 592

Query: 761 VESFINLHGGHVSISS 776
            +  + +  G + + S
Sbjct: 593 SKKLVEMMNGEIGLKS 608


>gi|313159680|gb|EFR59037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 1049

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 13/237 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  R E+ L    +   +++ +K +F+ ++S+E+R+PL  I+GF+ +L ++       
Sbjct: 666 ITERKRMEQELLSARDRAEESNRLKTAFLANMSHEIRTPLNAIVGFSAILAST---DEEQ 722

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV  I  ++ +LL L+ DILDL+ ++AG +   ++   LN+L+ E +  I  K+ E
Sbjct: 723 EKQEYVSIIENNNALLLQLIGDILDLSKIEAGTLDFIHTDFDLNELMREKENVIRMKVRE 782

Query: 665 NNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               ++++ + K    S   DR RL Q+   +L+NA  F+  GS       RD  +  F 
Sbjct: 783 G---VELLFEQKYEQCSVCTDRNRLSQVIINLLTNAAKFTQTGSIRFGYEMRDR-ELYFW 838

Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           V + GS IP D  + VF RFV  N     ++G GLGLSI +  +   GG + + S +
Sbjct: 839 VSDTGSGIPADKTEQVFERFVKLNTF---KQGTGLGLSICKMIVEHLGGRIGVESEE 892


>gi|298376091|ref|ZP_06986047.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298267128|gb|EFI08785.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 757

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+GF++LL TS +   
Sbjct: 507 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 565

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+LL+ + ++    M
Sbjct: 566 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 625

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
            +  + +K+          AD  RL Q+ + +++NA  F+++G  +I      +  +I  
Sbjct: 626 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 684

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780
           SV + G  IP D    VF RF  N      +G GLGL+I +  I   GG++++ S + EG
Sbjct: 685 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 742

Query: 781 VTTI 784
            T I
Sbjct: 743 STFI 746


>gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
 gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
          Length = 1075

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 200/435 (45%), Gaps = 34/435 (7%)

Query: 374 WKENIFSVYKSSETHKDTWH----LPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVD 424
           W E+I  +  +    KD       L +G  ++V ++      N +   + + +++T ++ 
Sbjct: 367 WAEDIPCLEANLNQAKDVTRSRHCLKDGTLINVDISGRDILYNNQAARLVLIQDVTEKLK 426

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E +           + ++  G+ +     ++ L+NP F  ++        P   ++ + 
Sbjct: 427 AENELQLTSSRLKALLQNMQAGILLEDAQRKVALANPVFCDMFDVP----VPPEELKGL- 481

Query: 485 ATCSRYYNESDGW----DLFAAIITSFDDERKSLQGT-LELLSDSVLEYSIIPLPNAQTM 539
             C+ +   S G+    D F ++I      R  + G  LEL+   V E   IP+ + +  
Sbjct: 482 -DCAPFAELSKGFFTNSDTFISVINDILTARNIVLGEELELVDGRVYERDYIPVFSNEEY 540

Query: 540 L----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           L     + +V++  +A++ L +  +   ++   K  F+ ++S+E+R+PL  IIG   LL 
Sbjct: 541 LGHLWQYRDVSNKKKAQKVLIQARKKAEESSLAKERFLANMSHEIRTPLNAIIGMQRLLS 600

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   SL  +Q +Y++ I  S+  LL ++NDILD++ ++AG ++L      L  L+  + 
Sbjct: 601 KT---SLEERQQRYLDAIGTSADNLLVIINDILDISKIEAGKLELENVGFDLCKLIRHLV 657

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVIL 710
            ++  K  E  I +    D  +   V  D  RL QI   +L+NA+ F+  G    ST ++
Sbjct: 658 FTLGYKAEEKGIGLYANIDDNMHPIVLGDSVRLHQILLNLLNNAIKFTDVGKVIISTSLV 717

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           +A  D     F V + G  I  +  ++VF  F        R+  G GLGL+I    + L 
Sbjct: 718 EANPDTQTVCFEVSDTGRGIKAENIEAVFESFTQEDASITRKFGGSGLGLAIGRQLVELF 777

Query: 769 GGHVSISSSDEGVTT 783
           GG ++++S     TT
Sbjct: 778 GGKLTVTSEYSKGTT 792


>gi|60682677|ref|YP_212821.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
 gi|60494111|emb|CAH08903.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
          Length = 543

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 151/261 (57%), Gaps = 18/261 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTS 597
           +L F ++T+ ++ ER L E  E   +++ +K++F+ ++S+E+R+PL  IIGF+DL+ +T 
Sbjct: 285 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 344

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +     ++ +Y+  +++++ +LL L++DILDL+ ++AG M  +Y+   +N+L+    + 
Sbjct: 345 DV----EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----ED 396

Query: 658 IATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712
           I  +M + N R +V    ++ + G  +  DR RL Q+   +++NAM F+S+GS T+  + 
Sbjct: 397 ICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRL 456

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGH 771
            R   +  F VK+ G  IP D    VF RFV  N      +G GLGL+I    I   GG 
Sbjct: 457 TRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---IKGTGLGLAICRVIIERLGGT 513

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + + +   +    R+P +E
Sbjct: 514 IGVETREGKGSCFWFRLPVRE 534


>gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 849

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 129/231 (55%), Gaps = 4/231 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLN 622
           +A+  K+ F+ ++S+ELR+PL  I GF++++     G L  ++ Q YV  I +S   LL+
Sbjct: 593 EANRSKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHERYQDYVRDILSSGQHLLS 652

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILD++ ++AG M+L    ++  +++ +  + +  +  E +I + V    +L    A
Sbjct: 653 LINDILDMSKIEAGKMQLQPEPLMPAEVIEQCVRIMRARAEEKSIELTV-EGSELPEITA 711

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D + L Q+   ++SNA+ F+ +G  V L+  +     +  V + G  I ED  + V   F
Sbjct: 712 DPRALKQVILNLMSNAVKFTPEGGKVKLRGFQAADGVVLQVSDTGIGISEDDLQRVGRPF 771

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + + H  + +G GLGL++ +S I +HGG + I S     TT++  +P++
Sbjct: 772 EQIESQHSKKHQGSGLGLALSKSLIEMHGGALRIDSRLGEGTTVSFTLPAE 822


>gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 751

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 9/241 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E   +A+  K++F+  +S+ELR+PL  IIG ++LL +S    L+ +  +Y   I 
Sbjct: 350 LKEAKEEAERANRAKSAFLATMSHELRTPLNGIIGMSELLMSS---GLSGELVEYARTIQ 406

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L+NDILD++ +++G +K+      L  +L  V +++  +    N+R  +   
Sbjct: 407 TAGENLLALINDILDISQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKNLRFVLEVA 466

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSI 730
            ++ + V +D  RL Q+   ++ NA+ F+S+G  V+   ++      + +F V++ G  I
Sbjct: 467 SEIPAVVISDEARLSQVLFNLVGNAIKFTSRGEVVLRVWMEEEEGRAELVFQVRDTGIGI 526

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +    VF RF        RR  G GLGLSI +  + L GG + + S +   +    RI
Sbjct: 527 PREELPRVFERFHQVDQGVTRRFQGSGLGLSIAKDLVELMGGRIDVESEEGKGSCFTVRI 586

Query: 789 P 789
           P
Sbjct: 587 P 587


>gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 418

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 131/246 (53%), Gaps = 4/246 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+++ L E+N  L  +++ K +F+  +S+ELR+PL  I+G++++L    +G LN KQ +Y
Sbjct: 162 RSQQQLREQNRQLGMSNQYKINFLSSMSHELRTPLNAILGYSEVLLDGMMGELNPKQLEY 221

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S + LL ++ND+LDL+ ++AG ++L      +  L+N V   I  K   + I +
Sbjct: 222 CKEIYDSGSYLLIIINDLLDLSKIEAGKLELEIQPTHIEILVNSVIGIIKEKASRHGIIL 281

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728
                  +G    D  R+ QI   +LSNA+ F+  G  V LK +  D+ + +  V + G 
Sbjct: 282 LTDIQEDIGPAELDPLRVKQILINLLSNAIKFTDSGKQVGLKVSLHDDQELLIQVFDQGC 341

Query: 729 SIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            + E   + +F  F    S+  +    G GLGL++V   + LHGG + + S     ++  
Sbjct: 342 GVSEQDLQRIFLPFEQAESSIKKKNVEGTGLGLALVHKLVLLHGGSIDVKSELGQGSSFF 401

Query: 786 CRIPSK 791
            R+P +
Sbjct: 402 IRLPYR 407


>gi|256841370|ref|ZP_05546877.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737213|gb|EEU50540.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 768

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+GF++LL TS +   
Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+LL+ + ++    M
Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 636

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
            +  + +K+          AD  RL Q+ + +++NA  F+++G  +I      +  +I  
Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780
           SV + G  IP D    VF RF  N      +G GLGL+I +  I   GG++++ S + EG
Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753

Query: 781 VTTI 784
            T I
Sbjct: 754 STFI 757


>gi|262383487|ref|ZP_06076623.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294385|gb|EEY82317.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 768

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+GF++LL TS +   
Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+LL+ + ++    M
Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 636

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
            +  + +K+          AD  RL Q+ + +++NA  F+++G  +I      +  +I  
Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780
           SV + G  IP D    VF RF  N      +G GLGL+I +  I   GG++++ S + EG
Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753

Query: 781 VTTI 784
            T I
Sbjct: 754 STFI 757


>gi|91201123|emb|CAJ74182.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1110

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 16/250 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL + N  L +A+E+K  F+ + S+ELR+PL +IIGF+++L     G L  KQ +Y+  I
Sbjct: 419 ALEKMNRELVRANELKGRFIANASHELRTPLHSIIGFSEILLQKTFGDLTEKQQRYLNTI 478

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL LVN+ILDLA +DAG  +++Y T  +  +++EV   I        I  + + 
Sbjct: 479 FGSAKHLLYLVNNILDLAKIDAGKAEISYQTFPVKSVIDEVLVVIRPLADRKMIVPETVV 538

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIF--------- 721
              +  F AD+ +  QI   ++SNA+ F++    V   I K   D   F +         
Sbjct: 539 HHDV-YFTADKIKFKQILYNLISNAIKFTADSGNVGIAIEKIISDKKTFPWVTESQEFLK 597

Query: 722 -SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            SV + G  I PED  + +F  F          G GLGLS+ +  + +HGGH+++     
Sbjct: 598 VSVWDTGIGIKPEDR-ERIFEEFEQIDSSKSTEGTGLGLSLTKKLVEIHGGHITVEGIYG 656

Query: 780 GVTTINCRIP 789
             +  N  +P
Sbjct: 657 QGSVFNVYMP 666


>gi|53714664|ref|YP_100656.1| hypothetical protein BF3378 [Bacteroides fragilis YCH46]
 gi|52217529|dbj|BAD50122.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 626

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 151/261 (57%), Gaps = 18/261 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTS 597
           +L F ++T+ ++ ER L E  E   +++ +K++F+ ++S+E+R+PL  IIGF+DL+ +T 
Sbjct: 368 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 427

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +     ++ +Y+  +++++ +LL L++DILDL+ ++AG M  +Y+   +N+L+    + 
Sbjct: 428 DV----EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----ED 479

Query: 658 IATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712
           I  +M + N R +V    ++ + G  +  DR RL Q+   +++NAM F+S+GS T+  + 
Sbjct: 480 ICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRL 539

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGH 771
            R   +  F VK+ G  IP D    VF RFV  N      +G GLGL+I    I   GG 
Sbjct: 540 TRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---VKGTGLGLAICRVIIERLGGT 596

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + + +   +    R+P +E
Sbjct: 597 IGVETREGKGSCFWFRLPVRE 617


>gi|301309591|ref|ZP_07215533.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
 gi|300832680|gb|EFK63308.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
          Length = 768

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+GF++LL TS +   
Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+LL+ + ++    M
Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 636

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
            +  + +K+          AD  RL Q+ + +++NA  F+++G  +I      +  +I  
Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780
           SV + G  IP D    VF RF  N      +G GLGL+I +  I   GG++++ S + EG
Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753

Query: 781 VTTI 784
            T I
Sbjct: 754 STFI 757


>gi|317154359|ref|YP_004122407.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944610|gb|ADU63661.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 764

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 117/231 (50%), Gaps = 8/231 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L    E    AD  K  F+  +S+E+R+P+  I+G  DL+  +    +   Q QY+E
Sbjct: 371 ERELALAKERAEAADRAKTDFLAGMSHEIRTPMNTILGMADLMLETDPTPV---QRQYIE 427

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              +S  +LL ++ND+LDL+ ++AG ++L    + + D LN  ++ +A +  +  +  ++
Sbjct: 428 VFQSSGAMLLGIINDVLDLSKIEAGEVRLETVPVDMADFLNRTREIVAGRAAQKGLAFRI 487

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGS 728
             +D     F+ D  RL Q+   ++ N + F+  G+    + +AA   G   F+V + G 
Sbjct: 488 EQADHAPRRFLGDPVRLRQVLVNLIDNGIKFTESGTVRLAVGQAADPPGRLTFAVTDTGI 547

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            I  +  + +F RF        R+  G GLGL+I    + L GG + + S+
Sbjct: 548 GIAPESQEQIFQRFTQADASTTRKYGGTGLGLAISRRLVELMGGEIRLESA 598


>gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 842

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 12/227 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EA  +A++ K+ F+  +S+E+R+P+  ++G   +L  + L   + KQ +Y++ I +S 
Sbjct: 442 EKEAAEQANQAKSEFLARMSHEIRTPMNGVLGMASILADTPL---SEKQRKYLDTIVSSG 498

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LLN++NDILD + ++AG + L+     L++LL+ +    + + H  NI  I  ISDG 
Sbjct: 499 ESLLNIINDILDFSKIEAGKLDLDNHPFKLSELLSYLTDIFSPRAHSKNIELICAISDGI 558

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPE 732
             + + D  RL QI + ++ NA+ F+ +GS  I+    D    N     SV + G  IP 
Sbjct: 559 PETLIGDSGRLRQILTNLVGNALKFTQQGSIQIIVEISDEDARNMKLKISVIDTGIGIPL 618

Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
              + +F  F S A     R   G GLGLSI +S + L GG + + S
Sbjct: 619 GKQQKIFESF-SQADGSTTRTYGGTGLGLSISKSLVELMGGELGVES 664


>gi|20092758|ref|NP_618833.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19918052|gb|AAM07313.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 375

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 121/210 (57%), Gaps = 2/210 (0%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KNSF+ ++S+ELR+PL ++IGF+DLL     G LN+KQS+YV  I  S   LL ++N++L
Sbjct: 151 KNSFIMNMSHELRTPLNSVIGFSDLLLEGAFGPLNTKQSKYVNNILISGKNLLEIINNLL 210

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG   L Y  + +  L+ +V+ S+ +      I +++  D  +G+  AD  +L 
Sbjct: 211 DISRLEAGEKTLKYENVDIASLIGDVRMSLLSPASVKRITVELKIDPSVGNVRADITKLR 270

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           QI   ++SNA+ F+     V++ A +  G     V + G  + +D  + +F  F    ++
Sbjct: 271 QILYNLVSNAIKFTPAKGKVVISACKKEGVLEVKVSDTGIGLSKDSHEKIFMPFTQADSS 330

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 G GLGL IV +F++LHGG + + S
Sbjct: 331 AARGYGGAGLGLYIVRNFVDLHGGKIWVDS 360


>gi|241764934|ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
            delafieldii 2AN]
 gi|241365496|gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
            delafieldii 2AN]
          Length = 1425

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 15/244 (6%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QY 609
            ALT+     ++A++ K+ F+  +S+ELR+PLT+I GF +L++      L  +QS    Q 
Sbjct: 1175 ALTQSEAEAQRANQAKSEFLAAMSHELRTPLTSIRGFAELMELRSKDPLIQEQSALIRQG 1234

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             E+++A       L+ +ILDLA ++AG M  +   +VL+DL++EV +         ++ +
Sbjct: 1235 AEHLNA-------LLTEILDLARIEAGAMPAHPEPVVLHDLVHEVSELFRVSAVAKSLAL 1287

Query: 670  -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNG 727
               +SD    + V DR +L QI S +LSNA+ F+  G   + + A  D     F V + G
Sbjct: 1288 TAAVSDAAPQTLVTDRLKLKQILSNLLSNAIKFTPAGRVEIFVDACPDGSQVHFHVNDTG 1347

Query: 728  SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              IP  +   +F +F     R   Q  G GLGLS+  +   L GG +++ S+    +T  
Sbjct: 1348 PGIPASLHGVIFEKFSQGHARISYQHGGTGLGLSLSRALAELLGGTLTVRSAVGEGSTFT 1407

Query: 786  CRIP 789
              +P
Sbjct: 1408 LSLP 1411



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 125/234 (53%), Gaps = 14/234 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY----ISASSTI 619
           +A   K+ FV ++S+ELR+PL +I+GF      S+LG L  +Q + +      I A+   
Sbjct: 599 EASRSKSEFVANISHELRTPLQSILGF------SELGMLRGRQHEKLAAMFSDIHAAGQR 652

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           +L LVND+LD+A +++ +   ++  I + DL+++V   +   +    + +++ +    L 
Sbjct: 653 MLVLVNDLLDIAKIESTVGAFHFERIDVRDLIDDVAAEMELLLGRKRLDLRLALGRAPLI 712

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
           + V D  R  Q+   +L+NA+ FS KGS + + A+  + DFI   V + G  IP    ++
Sbjct: 713 AKV-DPSRFQQVVRNVLANAVKFSPKGSAIDISASTPDDDFIHIQVCDQGPGIPPSELEA 771

Query: 738 VFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           VF  FV ++  R    G GLGL+I    I  HGG ++ ++   G    +  +P+
Sbjct: 772 VFEAFVQSSQTRDGSGGTGLGLAICRKIITAHGGRINATNVPGGGAMFHIVLPT 825


>gi|265765874|ref|ZP_06093915.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253542|gb|EEZ25007.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 565

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 149/260 (57%), Gaps = 16/260 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F ++T+ ++ ER L E  E   +++ +K++F+ ++S+E+R+PL  IIGF+DL+  + 
Sbjct: 307 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 366

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ +Y+  +++++ +LL L++DILDL+ ++AG M  +Y+   +N+L+    + I
Sbjct: 367 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----EDI 419

Query: 659 ATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713
             +M + N R +V    ++ + G  +  DR RL Q+   +++NAM F+S+GS T+  +  
Sbjct: 420 CLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLT 479

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           R   +  F VK+ G  IP D    VF RFV  N      +G GLGL+I    I   GG +
Sbjct: 480 RQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---IKGTGLGLAICRVIIERLGGTI 536

Query: 773 SISSSDEGVTTINCRIPSKE 792
            + + +   +    R+P +E
Sbjct: 537 GVETREGKGSCFWFRLPVRE 556


>gi|91772550|ref|YP_565242.1| Cache sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711565|gb|ABE51492.1| HATPase domain-containing external sensor signal transduction
           histidine kinase [Methanococcoides burtonii DSM 6242]
          Length = 633

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 159/311 (51%), Gaps = 18/311 (5%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKS-LQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +A + +R  NE         II++F+D  KS L+G L   +++ +      +P+      
Sbjct: 328 VAISITRPINE---------IISNFEDISKSALKGDLNRRAEADVGVDFRKIPSGLN--- 375

Query: 542 FVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++ DS++     L + N+ L+  D++K+ F+ +VS+ELR+PLT+I G+T  L    LG
Sbjct: 376 --DILDSLQIYSNDLEKANKELKSLDQMKDVFLSNVSHELRTPLTSIKGYTQNLYDESLG 433

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +N  Q   +E +  ++  L  LV+ +L ++   A I++ ++    +  +++        
Sbjct: 434 DINGSQKTSLETVLRNADRLRRLVDSLLYISQAQAEIIEYDFKECYIAKIISNTIMDTIM 493

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + EN++ I+      L +  AD  RL+ + + I+ NA+ F+  G  +IL    D     
Sbjct: 494 LVEENDLHIEKKIPSDLPTIEADEARLVDMLNNIVDNAIKFTPPGGMIILGVFDDENYLH 553

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  IP+++  ++F +F  + ++ R +  G GLGL I +  ++ H G + I S  
Sbjct: 554 LTVSDTGIGIPKELIPNLFKKFYQIDSSIRRKYGGTGLGLYICKKIVDAHSGEIWIESEP 613

Query: 779 EGVTTINCRIP 789
              TT++ R+P
Sbjct: 614 HKGTTVHIRLP 624


>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
 gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
          Length = 1259

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 176/367 (47%), Gaps = 47/367 (12%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           E  ++  EG+    P+G    +NPA   +     +  S    I+N+A   +  Y   D  
Sbjct: 462 EIFENAVEGIYQTTPEGFFVTANPALARMLGYP-DLASLRDDIKNVA---TDVYVNRDRR 517

Query: 498 DLFA------AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           D F        ++ +F+ E +   GT   +S++    S     N   +     V D    
Sbjct: 518 DEFVDEIHQNGVVFNFESEIRRGDGTFAWISENA---SARRNQNGDVLYYEGTVED---- 570

Query: 552 ERALTEKNEALRKADEIK---------NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
              +TE  +AL+  DEIK         ++F+  +S+E+R+PL  +IGF DLL T+KL   
Sbjct: 571 ---ITEHRKALQLTDEIKAAEAANEAKSTFLASMSHEIRTPLNGVIGFLDLLHTTKL--- 624

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q ++VE   +S++ LL+L+NDILDL+ ++AG ++L  +  VL DL+  V +  A + 
Sbjct: 625 DDQQGRFVELAKSSASSLLHLINDILDLSKIEAGGIELEQTEFVLTDLIESVPEMFAPQC 684

Query: 663 HENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--- 717
               + +   V +D    + + D +R+ Q+   + +NA+ F+  G  V L+  R+     
Sbjct: 685 RMTGLELNSSVATDVPQAA-IGDCERIRQVLVNLFANAVKFTETGG-VYLRVERERSVAS 742

Query: 718 --DFI----FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             D I    FSV++ G  +P    + +F  F  V  +      G GLGL+I +  + L G
Sbjct: 743 SHDAIARIRFSVEDTGIGVPRSKMQRLFKAFSQVDASTTRSYGGTGLGLAICKQLVELMG 802

Query: 770 GHVSISS 776
           G + + S
Sbjct: 803 GEIGVES 809


>gi|299148913|ref|ZP_07041975.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513674|gb|EFI37561.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 657

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 14/289 (4%)

Query: 508 DDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           D + K ++  LE+  D  L Y    I P    + +    ++ D ++  + L E       
Sbjct: 242 DGKLKEIEYPLEV--DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAED 299

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD++K+ F+ ++S+E+R+PL  I+GF++++  ++      ++ +Y+E I  +S +LL L+
Sbjct: 300 ADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTES---EEEKMEYLEIIQRNSNLLLQLI 356

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDL+ +++G  ++++  + +  L+ EV++    KM ++N+ +KVI          DR
Sbjct: 357 NDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDR 415

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            R++Q+    LSNA+  + KGS  +    +  G ++   V + G  I ++    +F RF 
Sbjct: 416 NRVMQVLFNFLSNAIKNTEKGSITL--GLKHEGSWLKLYVSDTGCGISKEKLPQIFTRFE 473

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 Q  G GLGLSI +S +   GG + ++S     +T    +P +E
Sbjct: 474 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLPYQE 520


>gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1274

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 125/227 (55%), Gaps = 9/227 (3%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ L+    G +N KQ + +E I  SS+
Sbjct: 877  NQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINDKQFKALETIERSSS 936

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL+L+NDILD+A ++AG +KL+ + I +  L       I  +  +  I++++     L 
Sbjct: 937  HLLDLINDILDVAKIEAGQIKLDCTAISVAALCQSSLVFIKQQALQKRIQVEIKIPLNLP 996

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIP 731
                D +R+ Q+   +L+NA+ F+ +   + L+  + + D          +V + G  I 
Sbjct: 997  DLFVDERRIRQVLINLLNNAVKFTPETGRISLEVTQVSPDISTVQNFLQIAVIDTGIGIM 1056

Query: 732  EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++    +F  F+   +A   Q  G GLGL++V+  + LHGG V ++S
Sbjct: 1057 QENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTS 1103


>gi|150015596|ref|YP_001307850.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149902061|gb|ABR32894.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 781

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 134/236 (56%), Gaps = 16/236 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  L    E   +A+  K+ F+ ++S+E+R+P+  I+G T LL+ SKL     +Q   V
Sbjct: 390 TETKLKAAKEEAERANSAKSQFLANMSHEIRTPMNGIMGMTSLLEFSKL---TDEQIDIV 446

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669
           + I  SS  LL ++NDILDL+ +D G ++L    I + +L+NE  +++ T + EN  +++
Sbjct: 447 KMIETSSKHLLQIINDILDLSVMDVGKIELKPERINIFNLMNE-SRNLFTYLAENKGLKL 505

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724
           ++I D  L    + D+ RL+Q+ S ++ NA+ F+ KG   +    ++   +    +FSVK
Sbjct: 506 EIIVDNNLPNEIILDKGRLMQVLSNLIGNAIKFTEKGKIQVSVDKVEDKENKVKLMFSVK 565

Query: 725 NNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  I E+    +FN F    +S + + Q  G GLGL+I ++ + L GG +S+ S
Sbjct: 566 DTGIGIKEEDIPRLFNYFTQLDISASKKFQ--GTGLGLAISKNIVELMGGEISVES 619


>gi|114706954|ref|ZP_01439853.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537504|gb|EAU40629.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 490

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVND 626
           +  + +  VS+ELR+PL  IIGF+ +L+    G+LNS KQ +YV  I +S   LL++VND
Sbjct: 230 LSEAMLATVSHELRTPLNAIIGFSGILENELFGALNSDKQREYVGLIQSSGRHLLSVVND 289

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ ++AG  +L+    +L++++ E    +  +  +  + I++       +   DR+ 
Sbjct: 290 ILDVSKIEAGAYQLHCEHFLLDEVVEEASAMVRCQADQKGVSIEIACPPGGTTIHGDRRA 349

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L  +   +L+NA+ F+  G TV L   R   D   +V + G  IP D    +   FV  +
Sbjct: 350 LNHMLVNLLANAVKFTDAG-TVTLSWERAGRDLRLNVADTGIGIPADQIGKLGKPFVQAS 408

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               RR  G GLGL+ V     LHGG ++I S++   T +   +P
Sbjct: 409 CGMSRRYEGTGLGLAYVRGMCELHGGAMTIESTEGEGTRVMLDMP 453


>gi|186684847|ref|YP_001868043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467299|gb|ACC83100.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 738

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 6/254 (2%)

Query: 529 SIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           S+IP  N +    +    ++T+    E  L    EA   A   K  F+  +S+ELR+PL 
Sbjct: 319 SVIPDSNGEPEFFLAMIEDITERKETELKLRASQEAAEAASRAKTEFLATMSHELRTPLN 378

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G + LL+   +GSLN KQ++YV  I +S   LL L+NDILDL+ V+ G  +L  S +
Sbjct: 379 AIMGLSQLLQQEIVGSLNEKQNEYVSCIYSSGEHLLALINDILDLSKVEEGKEELLLSPL 438

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            ++DL N    ++  +  E  +++    D +    +AD +R+ Q+   +L+NA+ F+  G
Sbjct: 439 PVSDLCNYAIWTVRDRASEKGLKLTYKIDLQEDICIADERRIKQMLLNLLTNAIKFTPVG 498

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
           +  ++      G   F+V + G  I  +  + +F  F     R  R+  G GLGL++   
Sbjct: 499 NVSLVVKKVPQG-ITFTVSDTGIGIDPNQFQFLFEPFKQLDSRLNRQYEGTGLGLALTRK 557

Query: 764 FINLHGGHVSISSS 777
              LHGG V+++S+
Sbjct: 558 LARLHGGDVTVTST 571


>gi|262381423|ref|ZP_06074561.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296600|gb|EEY84530.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 533

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 135/231 (58%), Gaps = 13/231 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D +K++F+ ++S+E+R+PL  I+GF+ LL  S       ++ +Y+  I +S+  LL L
Sbjct: 308 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 364

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681
           + DILD++ +++G M+  Y+T+ L+++    +Q+ A ++      +KVI  SDG     V
Sbjct: 365 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAPG---VKVIFESDGNDYCIV 421

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +++ RL Q+ +  LSNA+ F+S GS        D+G +++ V + G  I ++   S+FNR
Sbjct: 422 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 480

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           FV  N+    ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 481 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 528


>gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1138

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 129/245 (52%), Gaps = 3/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + +T+K   + +A + K+ F+ ++S+ELR+PL +I+    LLK +K  +LN+ Q +Y
Sbjct: 465 KARKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIKY 524

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I ++ + LL+L+N++LDLA +++G + L    I ++ L   ++        E +I  
Sbjct: 525 ATVIHSAGSDLLHLINELLDLAKIESGQIDLVEDQIDIHSLTRNIEGLFRISAEEKSINF 584

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           K   D +  S F+ D  RL Q+   +LSNA  F+  G  + L     NG+  F V+++G 
Sbjct: 585 KTTIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELTYKHVNGNIHFIVQDDGI 644

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +  K +F  F        R+  G GLGLSI      L GG +S+ S  +  +T   
Sbjct: 645 GIAPEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTF 704

Query: 787 RIPSK 791
            +P +
Sbjct: 705 ILPYR 709


>gi|21107426|gb|AAM36144.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 468

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 221 LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 280

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +V+D+LDLA ++AG + ++     L DL   ++          +  +     
Sbjct: 281 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDMGSTTLIFEDP 340

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP ++
Sbjct: 341 PVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAEL 400

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 401 HEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 444


>gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42]
 gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42]
          Length = 593

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V  +V   R +TE+    R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S  
Sbjct: 344 HVRGAVAVLRDMTEE----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASTE 398

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +  + I   S  +  LVND+LDLA +++G   L+Y T+ L++ L ++ +  +    
Sbjct: 399 EEKKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAK 458

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  + +           V D  ++ Q+F+ ++ NA+  +  G +V + A          +
Sbjct: 459 EKGVSLTEDISVSQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQIVKDGLKIDI 518

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K++GS IPE+    +F RF     A    R G GLGL+IV++ +  HGG +++ SS +  
Sbjct: 519 KDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKG 578

Query: 782 TTINCRIPSK 791
           TT    IP+K
Sbjct: 579 TTFTFYIPTK 588


>gi|300777936|ref|ZP_07087794.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910]
 gi|300503446|gb|EFK34586.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910]
          Length = 1302

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 130/240 (54%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T SV+  + L    +    A + K+ F+ ++S+E+R+PL  +IGF+DLL  +    LN
Sbjct: 648 NITTSVKINKELKNAKKMADIASQAKSEFLANMSHEIRTPLNGVIGFSDLLLKT---PLN 704

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q+QY+ YI+ S   LL+++NDILD + +++G M+L+     + D++++V   I  +  
Sbjct: 705 EIQTQYLNYINESGENLLSIINDILDFSKIESGKMELSIEKANVYDIVSQVINVILYQSQ 764

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           + NI + + I  G   +   D  RL QI   +L NA+ F+ +G   +    L     N  
Sbjct: 765 KKNIELLLNIEPGLPETIWLDESRLKQILINLLGNAVKFTQEGEIELKVEKLSIESKNIT 824

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV++ G  IP++  K +FN F        ++  G GLGL+I  + +N  G  +S+ S
Sbjct: 825 LRFSVRDTGIGIPKEKQKHIFNAFTQENSSISKKYGGTGLGLTISNNILNYMGSSLSLVS 884


>gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon]
          Length = 476

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +R  + L   NE L++ D +K+ FV  VS+EL++PLT +     +L+ +  G     +
Sbjct: 230 DLIRTNKELALANERLKELDRLKSDFVSMVSHELKTPLTAMRTSAQVLEAA--GIATETK 287

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I  +     NLVND+LDL+ +++G MKL + ++ L+ L+ +  +S+     E  
Sbjct: 288 REMLDIILRNIDRQTNLVNDLLDLSRIESGRMKLKFESVSLDSLIADSIESVKHAASEKG 347

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++ V     L S   DR++L Q+   +L+NA+ F+ +   + +KA   NG     V + 
Sbjct: 348 IKLNVKLPEGLSSVKGDREKLTQVVINLLNNAIKFTPRSGEISIKAIELNGQVEVKVSDT 407

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           G  IP +  + VF++F  V +    +  G GLGL+I +  I  H GH+
Sbjct: 408 GIGIPPEDLEKVFDKFYQVDSTLTREAGGTGLGLAICKGIIEAHNGHI 455


>gi|196231913|ref|ZP_03130769.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224035|gb|EDY18549.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 421

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 165/350 (47%), Gaps = 27/350 (7%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + EGV V      ++L NP+F SL+     +  P      +  +  R   E+     F  
Sbjct: 90  MEEGVMVVDTHHNLRLVNPSFLSLFDL---KCDP------VGQSVLRTLRET----AFEE 136

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           IIT+     +  +G +E  SD    +++  +P  +    F      V   R +T     L
Sbjct: 137 IITAALRTGQPQRGDVERTSDK-RHFAVHAVPVKE----FSGGPGIVAIIRDITR----L 187

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ +E++  FV +VS+ELR+PL+   G+ + L  +   S+  K Q++  E +   S  L 
Sbjct: 188 RQLEEVRREFVANVSHELRTPLSIFHGYLENLLDAP--SMPRKDQTEIFEILRKHSRRLN 245

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+L LA +++   K+   ++ L  LL  +    + K+    + +++ +   L    
Sbjct: 246 ALLEDLLTLARLESRQEKIACVSMKLPALLRSIGGDWSQKLANKKLALQIEAHDDLPRIS 305

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD QRL Q+   +L NA+ ++  G  + L+AA  NG     V+++G  IP      +F R
Sbjct: 306 ADPQRLEQVLHNLLENAVKYTEPGGNIFLRAAAQNGHVEVRVEDSGQGIPPADLPHIFER 365

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F     A   ++ G GLGLSIV+  I LHGG V+  S     TTI   +P
Sbjct: 366 FYRADKARSREQGGTGLGLSIVKHIIQLHGGTVAAESKYGKGTTIILHLP 415


>gi|219849092|ref|YP_002463525.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543351|gb|ACL25089.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 556

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L +  ++K+ F+  +S+E+R+PLT I+G  D+L+   +G L+ +Q   +  I 
Sbjct: 160 LARINAGLLRVTKLKDEFLASMSHEVRTPLTAILGLVDVLRAQLVGPLSEEQMGAINGIK 219

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                LL L+ND LD+A ++AG ++L+ + + ++D+   ++  IA       +++    D
Sbjct: 220 QGGQHLLALINDYLDIAKIEAGRLELDLTPVSVHDICQSLRPMIADMAKRAGLQLVYDLD 279

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPE 732
             +   +AD +RL QI   +LSNA+ F+  G  V L+   D   G   F+V + G  I  
Sbjct: 280 PTVQVMLADARRLRQILINLLSNAIKFTPAGGKVGLEVRGDAERGAVRFTVWDTGIGISA 339

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +    +F  F  + +  + +  G GLGL++V     LHGG VS+ S
Sbjct: 340 EDAARLFEPFQQIESERQKEVTGSGLGLALVAKLARLHGGSVSLES 385


>gi|119715576|ref|YP_922541.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536237|gb|ABL80854.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 682

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%)

Query: 544 NVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++T+ V AE  L E  E        LR+ D++K++FV  VS+ELR+P+T+I+G+T++L+ 
Sbjct: 423 DITERVEAEGRLVEALETERQAVERLREVDQVKDAFVSSVSHELRTPITSILGYTEMLED 482

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L  +Q   V  ++A+ST LL+L+ND+L L+ V    + +      L  +++    
Sbjct: 483 GVYGDLGREQLDAVRRVAANSTRLLSLINDLLTLSRVQEDEIGIVDRVFDLRSVVSAGTA 542

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +A  +   ++ +      +   F+ DR  L ++   +  NA  F+ +G  + ++     
Sbjct: 543 VVAPTLERRSLELTAELPDEPVPFLGDRDMLERVVINLAGNAAKFTPEGGRIGVRLLVGP 602

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
            + +  V + G  IP    + +F+RF  ++   +R   G GLGLSI  + +  HGG +S+
Sbjct: 603 EESVIEVSDTGIGIPHQEQERLFSRFFRSSLAQERAIPGSGLGLSIAHAIVEKHGGTMSV 662

Query: 775 SSSDEGVTTINCRIPS 790
            S     TT    +P+
Sbjct: 663 DSEPGEGTTFRVHLPA 678


>gi|256840816|ref|ZP_05546324.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738088|gb|EEU51414.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 555

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 135/231 (58%), Gaps = 13/231 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D +K++F+ ++S+E+R+PL  I+GF+ LL  S       ++ +Y+  I +S+  LL L
Sbjct: 330 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 386

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681
           + DILD++ +++G M+  Y+T+ L+++    +Q+ A ++      +KVI  SDG     V
Sbjct: 387 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAPG---VKVIFESDGNDYCIV 443

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +++ RL Q+ +  LSNA+ F+S GS        D+G +++ V + G  I ++   S+FNR
Sbjct: 444 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 502

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           FV  N+    ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 503 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 550


>gi|255014411|ref|ZP_05286537.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 768

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 6/244 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+GF++LL TS +   
Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+LL+ + ++    M
Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLM 636

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
            +  + +K+          AD  RL Q+ + +++NA  F+++G  +I      +  +I  
Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780
           SV + G  IP D    VF RF  N      +G GLGL+I +  I   GG++++ S + EG
Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753

Query: 781 VTTI 784
            T I
Sbjct: 754 STFI 757


>gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 1010

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 4/258 (1%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  +VT    AE  L + N AL  A   K+ F+  +S+ELR+PL  I+G ++ L    
Sbjct: 609 LATLRDVTTEKHAEEKLRQANVALAHAARTKDEFLASMSHELRTPLNAILGLSEALIEGV 668

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G LN +Q   +  I AS   LL L+NDILDL+ V+AG + L    + + ++       +
Sbjct: 669 RGPLNERQLDALHNIEASGQHLLALINDILDLSKVEAGRLDLQIEAVSVAEVCQASLLFV 728

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--N 716
             +  + ++R+    D ++    AD +RL Q+   +LSNA+ F+     V L    D   
Sbjct: 729 KEQALKKSLRLSFHLDDQMAEMDADPRRLKQMLVNLLSNAVKFTPPKGHVNLHVTIDLEA 788

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
              +F V++ G  I +D    +F  F     R   Q  G GLGL++V     +HGG V +
Sbjct: 789 EQIVFVVEDTGIGIAQDDLPRLFQPFKQLDSRLSRQHEGTGLGLALVRRLAEMHGGGVMV 848

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     +  + ++P ++
Sbjct: 849 ESELGKGSRFSIQLPYRQ 866


>gi|284990063|ref|YP_003408617.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284063308|gb|ADB74246.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 634

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 11/265 (4%)

Query: 532 PLPNAQTMLTFVN---VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           P+P   ++   V+   V  +V   R ++++ E  R    +K+ F+  VS+ELR+PLT+I 
Sbjct: 365 PVPIEMSVAPIVSGDEVHGAVTTFRDISQRTEVER----LKDEFISVVSHELRTPLTSIK 420

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL    +G + + Q   ++    ++  L  LV+DILDL  ++AG M L       +
Sbjct: 421 GSLSLLTNGVMGPVPAAQQPLLDMARRNAERLGELVDDILDLDRLEAGRMPLRPVETDAD 480

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
           +L  +V  S+        + + V   G   + V  D  R+ Q+ + ++ NA+ FSS G  
Sbjct: 481 ELAAQVVGSLQPAAAVAGVELSVKPCGGGATVVRVDPHRMNQVLTNLVGNAIKFSSPGCP 540

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
           V +  +R   +   +V++ G  IPED   +VF RF    H   G R G GLGL I    +
Sbjct: 541 VTVSVSRAGDEVCLAVRDRGPGIPEDQHAAVFERF-RQVHEPGGARTGTGLGLPIARGIV 599

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
           +  GG + ++S     +T    +P+
Sbjct: 600 DRSGGRIELTSEPGKGSTFTVVLPA 624


>gi|71736609|ref|YP_273435.1| two-component sensor/regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557162|gb|AAZ36373.1| two-component hybrid sensor and regulator alr3120 [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 576

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 130/260 (50%), Gaps = 28/260 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ LK   +G + 
Sbjct: 291 DVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMT 350

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L +LL+     +  +  
Sbjct: 351 DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAA 410

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------ 711
              I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L             
Sbjct: 411 LQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAHAGVI 470

Query: 712 -----------AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
                       + D   F+  SV + G  I +     +F  F S    G  R   G GL
Sbjct: 471 EGDWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAF-SQIDSGLARKFEGTGL 529

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL++V+    LHGG V+++S
Sbjct: 530 GLAMVKQLTELHGGCVAVAS 549


>gi|332519219|ref|ZP_08395686.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332045067|gb|EGI81260.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 507

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +SV   + L  KN  L++ +  KN+F+ + S+ELR PLT I+ F+D+L  ++L   + +Q
Sbjct: 114 ESVINSQILELKNTYLKEKEAFKNTFIANFSHELRDPLTGILTFSDILSKTQL---DPQQ 170

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ +++SS+ L  +++DILD++ ++AG ++L      L +LL E+K +   K  + +
Sbjct: 171 KDYIQILNSSSSFLKQMIDDILDISKIEAGKLELTIDPFNLKELLEEIKLNYIIKAQQKS 230

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-F 721
           I      D  L   V  D +RL Q+ + +L NA+ F+  GS  +   L   R     I F
Sbjct: 231 IDFNYKFDENLPEIVGGDSKRLRQVITNLLDNAIKFTHTGSVTLAVSLNQIRAQKASIHF 290

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +K+ G  I E+    +F+ F         +G GLGL+IV+  + L    +++ S
Sbjct: 291 EIKDTGIGIKEEHFNDIFSSFTQVNENDNYKGTGLGLAIVKHLVELSNSKINVES 345


>gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 589

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 160/339 (47%), Gaps = 29/339 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + EG+ V    G + L NPAF  L+   ++    G  I  IA    R+    +  + F A
Sbjct: 260 MGEGLMVSDAGGTVTLVNPAFLDLFGLTQS--VEGRQIIEIA----RF---PELHETFRA 310

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKN 559
           +++S  +                +E   +PL + + +LT    +   D +R   A+    
Sbjct: 311 VVSSRSEH---------------VEEMTLPLGDEKQVLTHWVPLMEEDELRGVVAVFHDI 355

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             L++ + ++  FV +VS+ELR+P+T I G+ + L    +     +  +++E I + S  
Sbjct: 356 SDLKRLEVVRRDFVANVSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSER 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+ D+L L+ +++G ++L  + I L+  ++     +  K     I I + +      
Sbjct: 416 LADLIRDLLTLSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAIDISALAGAPP 475

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD  RL Q+   ++ NA+ ++  G T+ L A   +G    SV + G  IP      +F
Sbjct: 476 VLADPGRLEQVLINLMDNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLPRIF 535

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  V  A      G GLGLSIV+  I LHGG++++ S
Sbjct: 536 ERFYRVDAARSRDEGGTGLGLSIVKHIIQLHGGNITVES 574


>gi|257060613|ref|YP_003138501.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590779|gb|ACV01666.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 763

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 22/258 (8%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSL 602
           E+ + E+ + LR        A+  K+ F+ ++S+ELR+PLT IIG +  L   +++  SL
Sbjct: 362 EQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSL 421

Query: 603 N-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              KQ QY++ I  S   LL ++N+IL+ + ++AG     Y   +    L +  Q+I  K
Sbjct: 422 PLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAG----KYVLSIQQFSLQKAAQNIHKK 477

Query: 662 MHEN------NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +       N+++++  + +   F AD +RL QI   +L+NA+ F+ +G TVIL+  R+
Sbjct: 478 LRQEAVKRKINLQLELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWRE 537

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             + IF V++ G  I ++    +F  F  +  + R    G GLGL++ +  + LHGG + 
Sbjct: 538 GNEAIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIE 597

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S  +  +    R+P++
Sbjct: 598 VESVLQEGSIFTVRLPNQ 615


>gi|94264236|ref|ZP_01288031.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93455347|gb|EAT05551.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 133/251 (52%), Gaps = 5/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R ER L E  +A + A++ K++F+ ++S+ELR+PL  IIG++++L         
Sbjct: 537 DITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEEHGL 596

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              ++ ++ I  ++  LL L+N++LD +  ++G + L      L++L+  V   I   + 
Sbjct: 597 EGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELMAAVVDIIRPLLP 656

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI- 720
           E   R+ V ++ +LG+   D  RL QI   +LSNA  F+ KG   +   +  RD G+++ 
Sbjct: 657 ERENRLLVETEEELGTIRTDGTRLRQILYNLLSNAAKFTEKGFITLRTRRLMRDGGEWVE 716

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             +++ G  I E+  K +F  F        RR  G GLGL+I   F  + GG +++ S+ 
Sbjct: 717 IDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVSTP 776

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 777 GQGSTFTVSLP 787


>gi|319901154|ref|YP_004160882.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319416185|gb|ADV43296.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 807

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 132/244 (54%), Gaps = 14/244 (5%)

Query: 540 LTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           LT VN  +T     E  L E  E    AD +K++F+ ++S+E+R+PL  I+GF+ L+  +
Sbjct: 560 LTSVNYDITQLKETECKLMEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSGLVSET 619

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      ++ +Y+  + A++ +LL L++DILDL+ ++AG        I +N L  ++  S
Sbjct: 620 ED---PDERKEYISIVEANNNLLLQLISDILDLSKIEAGTFDFMVGDINVNQLCTDLVTS 676

Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +  K+      ++++ D  L  +  V+DR RL Q+ S  ++N++ F+ KGS  +     D
Sbjct: 677 LQMKLKPG---VELVFDRNLPEYHIVSDRNRLYQVLSNFVNNSVKFTFKGSIKVGYEKVD 733

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                F V + G  I  D  K+VF+RFV  N+      G GLGLSI +S I   GG + +
Sbjct: 734 GMRLRFYVSDTGLGIAPDKQKAVFDRFVKLNSFVP---GTGLGLSICKSIIQQLGGTIGV 790

Query: 775 SSSD 778
            S +
Sbjct: 791 DSEE 794


>gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 573

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 8/258 (3%)

Query: 526 LEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           L  S+IP  + +    +    ++T+  + E  L     A       K+ F+  +S+ELR+
Sbjct: 302 LSVSVIPGSSGEPEYFLAIIDDITERKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRT 361

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G + LL+   +GSLN KQ +Y+  I +S   LL L+NDILDL+ V+AG  +L  
Sbjct: 362 PLNAIMGLSQLLQQEIVGSLNEKQQEYINCIYSSGEHLLALINDILDLSKVEAGKEELFL 421

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +++ D+ N+V  ++  +     +++    D +    +AD +R+ Q+   +L+NA+ F+
Sbjct: 422 IPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEANICIADDRRIKQMLLNLLTNAIKFT 481

Query: 703 SKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           S G  ++I+K   +  +FI S  + G  I  +    +F  F     R  R+  G GLGL+
Sbjct: 482 SVGEVSLIVKRVPEGINFIIS--DTGIGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLA 539

Query: 760 IVESFINLHGGHVSISSS 777
           +      LHGG V+++S+
Sbjct: 540 LTRKLARLHGGDVTVTST 557


>gi|312129290|ref|YP_003996630.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311905836|gb|ADQ16277.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1288

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 137/246 (55%), Gaps = 10/246 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +++ +N T+S+  ++ L E  ++  +A+  K+ F+ ++S+E+R+PL  +IGF+DLL  +
Sbjct: 636 VIVSALNNTESIAIQKELKEAMKSAEQANAAKSQFLANMSHEIRTPLNGVIGFSDLLLKT 695

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN+ Q QY+ YI+ S + L+ ++NDILD + V+AG M+L+ +   + DL ++V   
Sbjct: 696 ---PLNATQRQYLNYINESGSSLMQIINDILDFSKVEAGKMELDEAFHSIYDLSDQVINV 752

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAAR 714
           +  +    NI + + +  G   + + D  R+ Q+   +L NA+ F+ +G     + + +R
Sbjct: 753 VMYQAQVKNIELLLDVQHGLPAAVLLDEARVKQVLVNLLGNAVKFTEEGEVELAVRQISR 812

Query: 715 DNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            + +    F V++ G  IPE+  + +F+ F        +R  G GLGL+I  S +   G 
Sbjct: 813 TDKEIGLRFLVRDTGIGIPEEKKERIFDAFTQEDSSISKRYGGTGLGLTISNSILKHMGS 872

Query: 771 HVSISS 776
            + + S
Sbjct: 873 KLYLES 878


>gi|218779864|ref|YP_002431182.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761248|gb|ACL03714.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1177

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 135/253 (53%), Gaps = 20/253 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ +  + E A+  KN+A+  A++ KN F+  +S+E+R+P+T IIG T+LL  +    L 
Sbjct: 530 DIEERKQHEAAILAKNQAV-AANQEKNRFLAALSHEMRTPMTAIIGMTELLNET---GLT 585

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+QY++ + +++  LL+LV+D++D++ VDAG +KL      L +L+ +  +++A K H
Sbjct: 586 QQQAQYIKLMKSANEQLLSLVSDVMDISRVDAGRLKLETIPFNLLELVEKACETMAEKAH 645

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E N+ +   +S       + D  RL Q+ + ++ NA+ F+ KG  V+       GD    
Sbjct: 646 EKNLELACSVSPKTPIHLLGDPYRLKQVLNNLMQNAVKFTEKGEVVVTVRDAAEGDKKDG 705

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSN-----AHRGQRRGVGLGLSIVESFINLHGG 770
                F V + G  IP     S+F+    +      H G   G G+GLSI    + +  G
Sbjct: 706 QAVIEFCVSDTGIGIPSKRLASLFDHMAKDNDVDFHHYG---GTGVGLSISRKLVEMMKG 762

Query: 771 HVSISSSDEGVTT 783
             ++SS  E  +T
Sbjct: 763 DFTVSSKLEQGST 775


>gi|209808886|ref|YP_002264424.1| membrane associated response regulator,histidine kinase [Aliivibrio
           salmonicida LFI1238]
 gi|208010448|emb|CAQ80807.1| membrane associated response regulator,histidine kinase [Aliivibrio
           salmonicida LFI1238]
          Length = 818

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 135/247 (54%), Gaps = 11/247 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           ++L  V V  S   +R L  +N+ + KA++ K+SF+ ++S+E+R+PL  IIG T++L  S
Sbjct: 293 SVLIAVVVMTSRLEKRILRSQNQEI-KANKAKSSFLANMSHEIRTPLNGIIGMTEILSVS 351

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            L ++   Q  Y+  I+ASS  LL L+ND+LDL+ +++G +++N  +  + +++ +    
Sbjct: 352 TLTAI---QKDYLATINASSQTLLMLINDVLDLSKIESGNIEVNTHSCKIKEVIFDTAAL 408

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           IA K  +  + IK+I      ++V AD Q++ Q+   + SNA+ F+  GS     +  + 
Sbjct: 409 IAPKAQQKGVNIKIIMSENFPTYVKADEQKIRQVLMNLASNAIKFTEAGSISFELSLIEE 468

Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            D    + FSVK+ G  I E   + VF  F        +   G GLGL+I    I + G 
Sbjct: 469 TDTSYRYFFSVKDTGLGIEESKHEQVFEEFKQEDDDTSKNYGGTGLGLAISSKMIKMMGN 528

Query: 771 HVSISSS 777
            + + SS
Sbjct: 529 EIKLKSS 535


>gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 413

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 27/289 (9%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTM----LTFVNVTDSVRAERALTEKNEALRKADE---I 568
           G +   S+   EY + P+     M    ++F  + D  R   +    +EA ++A+E   +
Sbjct: 129 GGIHRFSEQETEYRL-PVQGHDEMASLAISFNQMAD--RIGESFVRLDEARKRAEEASRM 185

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  IIGF++L++     + + +  +  + I  SS  LL LVN IL
Sbjct: 186 KSEFLANMSHELRTPLNGIIGFSELIRDE---AADDETRENADIIEKSSRHLLELVNSIL 242

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682
           D+A ++AG M L    + L  L+ E     A  +H +  + K I      SD    +  A
Sbjct: 243 DIAKIEAGAMTLAVQDVKLAPLVAE-----AASVHHSAAQAKGITLSSQVSDNCPETIRA 297

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI   +LSNA+ F+ KG  V L    + G  IF V + G+ IPE M  ++F +F
Sbjct: 298 DPLRLRQIIHNLLSNAVKFTEKGE-VSLSVELEPGHLIFRVSDTGAGIPEGMLHAIFEKF 356

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V +       G GLGL++    + L GG + + S+    T  +  +P
Sbjct: 357 RQVDSFLTRSHSGTGLGLTLARHLVELMGGTIGVQSTVGKGTVFHFTLP 405


>gi|325108371|ref|YP_004269439.1| integral membrane sensor signal transduction histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324968639|gb|ADY59417.1| integral membrane sensor signal transduction histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 609

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 135/261 (51%), Gaps = 30/261 (11%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N +L + +++KN F+  +S+ELR+PL +I+GF+D+L ++   +LN KQ +Y+  IS
Sbjct: 293 LARANLSLFEMNKLKNEFLATMSHELRTPLNSILGFSDVLGSAD--NLNDKQKRYLGNIS 350

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL L+NDILDLA +++G M+L+     + +++ ++  SI+      NI +  +  
Sbjct: 351 SSGQRLLTLINDILDLAKIESGKMELHAVEFSIAEIVEQLCLSISPLADRKNIELTWMCS 410

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------------AARDN 716
             +     D  ++ QI + +LSNA+ F+  G  V ++                  AARD 
Sbjct: 411 PDMPPMYQDAGKIQQILTNLLSNAVKFTPDGGRVRVEVTPLCLVPDENNTDDSVPAARDL 470

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQR-------RGVGLGLSIVESFINLH 768
                SV + G  IP    + +F +F  S+A  GQ         G GLGLSIV+    L 
Sbjct: 471 --VQISVADTGIGIPLADQERIFEKFRQSSAVPGQEDLLTREYEGTGLGLSIVKELCKLL 528

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG V + S     +T   RIP
Sbjct: 529 GGEVKVESEFGKGSTFVVRIP 549


>gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 456

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 9/245 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E    A+  K+ F+  +S+ELR+PL  +IGFTD+L +   G +   Q++++ Y+ 
Sbjct: 202 LQAAREMAESANLAKSEFLATMSHELRTPLNAVIGFTDVLLSRIYGEVTDIQAEFLGYVL 261

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVIS 673
            SS  LL+L+NDILDL+ ++A  M+L  S + +  L +     +  +  ++ IR+ + ++
Sbjct: 262 QSSRHLLSLINDILDLSKIEADRMELEPSDVDIRQLASGSLVMVKERAQQHRIRLTEEVA 321

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGS 728
                +  AD ++L QI   +L+NA+ F+  G +V L      A    G  + +V++ G 
Sbjct: 322 PAVPPTITADERKLKQIVFNLLANAVKFTPDGGSVTLSVGLPPAEECEGGIMIAVQDTGI 381

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
            +     + +F+ FV       RR  G GLGL +    + LHGG +   S   G+ +T  
Sbjct: 382 GLAAGDLERIFDPFVQADGSATRRYEGTGLGLPLTRKLVELHGGTIRAESPGPGLGSTFR 441

Query: 786 CRIPS 790
             IP 
Sbjct: 442 VIIPP 446


>gi|296188236|ref|ZP_06856628.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296047362|gb|EFG86804.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 859

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 142/246 (57%), Gaps = 12/246 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  + +E  L +   A  +A+  K+ F+ ++S+E+R+P+  I+G TDL   + +  L 
Sbjct: 476 DITKRMESEDELKKAKIAAEEANIEKSRFLANMSHEIRTPINGIMGMTDL---TLMTELT 532

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q +Y+  + ASS+ LL+++NDILD++ +++G  KL+     L + ++++ ++I+   +
Sbjct: 533 NEQREYLNMVKASSSHLLDIINDILDISKIESGKFKLDLVPFNLEERISKMVKNISVLAY 592

Query: 664 ENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
           +  I +    D  +  G+ + D  +L QI   +LSNA+ F+ +G+ ++    ++  +D  
Sbjct: 593 KKFIEVMYFIDPNISEGNIIGDPSKLDQILMNLLSNAIKFTDRGNIIVCAKKVEGPKDKI 652

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              FSV + G  IPED    +F  F  + +++  +  G GLGLSI +  +N+  G + ++
Sbjct: 653 KIQFSVSDTGIGIPEDKMDKLFKTFSQIDDSYTKKYGGTGLGLSISKHLVNMMNGDIWVT 712

Query: 776 SS-DEG 780
           S  +EG
Sbjct: 713 SKHNEG 718


>gi|258592849|emb|CBE69158.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 731

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 22/250 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L   N  L  A   K +F+ ++S+ELR+PL  I+GF+DLL     G L +KQ++Y  +
Sbjct: 459 RELQIANGHLADASRHKTAFLTNMSHELRTPLNAILGFSDLLCDQTFGPLTAKQARYANH 518

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L+ND+LDL+ V+AG + L      L++ L      I        + I   
Sbjct: 519 IQTSGRHLLALINDLLDLSKVEAGKLTLRLEPFDLSEALTVAVYEIQPVADAKRLTIVPD 578

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------------------- 713
            D    +  AD  R  QI   +LSNA+ F+ +G T+ + A+                   
Sbjct: 579 IDTAPITLTADPVRFKQIIYNLLSNAVKFTPEGGTIRVSASLGRRESGVEAPPHPIPTTL 638

Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
             +GDF+  +V + G  I  +    +F RF  +      Q +G GLGL++ +  + LHGG
Sbjct: 639 HHSGDFVEIAVTDTGIGIAAEDLSRLFTRFTQLEIETTKQFQGSGLGLALTKQLVELHGG 698

Query: 771 HVSISSSDEG 780
            ++++S+  G
Sbjct: 699 TITVTSAGPG 708


>gi|258591257|emb|CBE67554.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 981

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 32/269 (11%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L   N+ L  A   K+ F+ ++S+E R+PL +IIGF+D+L+    G L  KQ+++ + 
Sbjct: 703 RTLRAANQQLEAASRHKSEFLANMSHEFRTPLNSIIGFSDILRDPAFGPLTEKQARFAQN 762

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+L+ND+LDL+ V+AG + L+       + +      +  +     + +   
Sbjct: 763 IQVSGQHLLSLINDLLDLSKVEAGKIDLHPEPFECREAIRAALAEVQPQADLKQLELTPQ 822

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAAR-DNGD---------- 718
           +D    + +AD  R  QI   +LSNA+ F+ +G  +   + +AAR + GD          
Sbjct: 823 TDEAPSTIIADPVRFKQILLNLLSNAVKFTPEGGRITVTVRRAARQEEGDTSQGAAGQGL 882

Query: 719 ---------------FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIV 761
                             +V + G  I  D    +F  F   +A   +R +G GLGL++ 
Sbjct: 883 EILHSTPHTPHPCDVLEIAVADTGIGIKPDDLPRLFQEFTRLDAAIAKRTKGTGLGLALT 942

Query: 762 ESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +  + LHGG ++  S  EG  +T   R+P
Sbjct: 943 KRLVELHGGEIAAVSDGEGRGSTFTVRLP 971


>gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 587

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 27/338 (7%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           ++EGV      G++ L+NP  RSL K  E  L+ G  I       S    + +   LF  
Sbjct: 260 MNEGVMAIDGQGKVILANPQARSLLKLSETDLT-GKEI-------SSLLPQEEMNQLFMD 311

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +I S +      Q    +    VL   I PL         V +   V      TE    +
Sbjct: 312 VIASSEVHSAEYQ----VFGGKVLSLQIAPLYRNNQTWGAVGILQDV------TE----V 357

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++++  FV +VS+ELR+P+T+I GF + L    L      Q +Y+  I   +  L  
Sbjct: 358 RHLEQMRRDFVANVSHELRTPMTSIQGFVEAL-LDGLAEDKESQDRYLNVILDETVRLNR 416

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LDL+ ++ G +     TI L  L  +V   +  ++ +  + + + +   + +   
Sbjct: 417 LVSDLLDLSRLEKGEVGWPMETIELKPLFADVASKLQPQVAKQELSVDIDTPENISAVTG 476

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           +R R+ Q+   +L NA+ F+  G  + L +A+D GD +   V + G  IP +    ++ R
Sbjct: 477 NRDRIQQVLINLLGNAISFTPPGGKITL-SAKDVGDKVEVQVTDTGMGIPPEEQDKIWER 535

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F  V  A      G GLGLSIV+  ++ HGG V + S+
Sbjct: 536 FHKVDKARTRSFGGTGLGLSIVKQIVDAHGGDVGLEST 573


>gi|298480341|ref|ZP_06998539.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298273622|gb|EFI15185.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 936

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T +L   
Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 742

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 743 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 801

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E    ++++ D  L     ++DR R+ Q+ S  ++NAM F+S+GS  +    +D G+  
Sbjct: 802 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 857

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 858 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911


>gi|269795552|ref|YP_003315007.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269097737|gb|ACZ22173.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 576

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 117/217 (53%), Gaps = 3/217 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ + +K+ FV  +S+ELR+PL++I+G+ +LL+  + G L ++Q+QY++    ++  LL 
Sbjct: 343 REFERLKDEFVGMISHELRTPLSSILGYLELLRDEEDGPLTAEQTQYLDVAERNAQRLLR 402

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           LV D+L  A V+AG   + + +  L  +L    Q+        ++R++V+ D  L + V 
Sbjct: 403 LVGDLLFTAQVEAGRFPIVHQSTELESVLRAAAQTFEPVAAAASVRLRVVMDESLSTVVR 462

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q    +LSNA+ FS  G  V L     +     +V++ G  IP+     +  R
Sbjct: 463 GDATRLGQAVDNLLSNAVKFSPAGGQVTLSLVAHDERATITVRDTGIGIPDTELDQLTTR 522

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F   S A      G+GLGL+I ++ +  H G + ++S
Sbjct: 523 FFRASTATSASVPGIGLGLAITKAIVVAHRGRLDVTS 559


>gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 1149

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 127/232 (54%), Gaps = 3/232 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V+A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q +
Sbjct: 461 VQAQEELQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSDEQVK 520

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD+A V+AG +++   +  +  L+  ++           + 
Sbjct: 521 FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPESTQVERLVEGLRGMFEPLAGHKGLA 580

Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +V ++ ++  +   DRQRL QI   +LSNA+ F+ +G   +    +     +F+V++ G
Sbjct: 581 FEVTAEAQVPATLFTDRQRLEQILKNLLSNAIKFTERGKVSLNIGYQPGTGIVFAVRDTG 640

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             I  D  +++F  F        RR  G GLGLSI     +L GG +++ SS
Sbjct: 641 IGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSS 692


>gi|293373605|ref|ZP_06619953.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294809416|ref|ZP_06768121.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292631430|gb|EFF50060.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294443352|gb|EFG12114.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 936

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T +L   
Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 742

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 743 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 801

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E    ++++ D  L     ++DR R+ Q+ S  ++NAM F+S+GS  +    +D G+  
Sbjct: 802 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 857

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 858 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911


>gi|294665326|ref|ZP_06730618.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604919|gb|EFF48278.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1068

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 130/251 (51%), Gaps = 9/251 (3%)

Query: 549 VRAERALTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            R +  L  +N+ +R ++E+      K+ F+ ++S+ELR+PL + +    LL  +K G+L
Sbjct: 351 ARKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTL 410

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +++Q +Y + I +S+  LL L+NDILDL+ ++AG ++L   T+V   +L  ++++     
Sbjct: 411 SAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTGSVLQRLRETFEPLA 470

Query: 663 HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +  + +++  + G     V D QRL QI   +L+NA+ F+  G   +   A   G   F
Sbjct: 471 RQKGLALEITAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKVGLTVQAHAPGRVRF 530

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  I  +  + +F  F       +RR  G GLGLSI        GG +S+ S   
Sbjct: 531 AVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPG 590

Query: 780 GVTTINCRIPS 790
             +     +P+
Sbjct: 591 RGSCFTLELPT 601


>gi|291570453|dbj|BAI92725.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 497

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 136/247 (55%), Gaps = 16/247 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E  + A+  K+ F+ ++S+E+R+P+  ++GF DLL+++     + + S Y++ I+
Sbjct: 169 LKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQST---ITDPQASSYIKAIA 225

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ ++AG ++L+Y  + +  ++NE++     K  E NI+++V I+
Sbjct: 226 SSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEHIFEQKTKEKNIKLQVYIA 285

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------DNGDFIFSVKN 725
                S + D  RL QI   I+ N++ F+  GS  I+ +          ++ +   ++ +
Sbjct: 286 PEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASCSQLKPNHPYNSINLKIAITD 345

Query: 726 NGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I PED  K +F+ F  +  +  R+  G GLGL+I E  ++L GG + + S     +
Sbjct: 346 TGIGISPEDQQK-IFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESQINQGS 404

Query: 783 TINCRIP 789
           T     P
Sbjct: 405 TFTFDFP 411


>gi|150008008|ref|YP_001302751.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936432|gb|ABR43129.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 508

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 135/231 (58%), Gaps = 13/231 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D +K++F+ ++S+E+R+PL  I+GF+ LL  S       ++ +Y+  I +S+  LL L
Sbjct: 283 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 339

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681
           + DILD++ +++G M+  Y+T+ L+++    +Q+ A ++      +KVI  SDG     V
Sbjct: 340 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAPG---VKVIFESDGNDYCIV 396

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +++ RL Q+ +  LSNA+ F+S GS        D+G +++ V + G  I ++   S+FNR
Sbjct: 397 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 455

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           FV  N+    ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 456 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 503


>gi|293370768|ref|ZP_06617314.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292634128|gb|EFF52671.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 635

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 14/289 (4%)

Query: 508 DDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           D + K ++  LE+  D  L Y    I P    + +    ++ D ++  + L E       
Sbjct: 220 DGKLKEIEYPLEV--DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAED 277

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD++K+ F+ ++S+E+R+PL  I+GF++++  ++      ++ +Y+E I  +S +LL L+
Sbjct: 278 ADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTES---EEEKMEYLEIIQRNSNLLLQLI 334

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDL+ +++G  ++++  + +  L+ EV++    KM ++N+ +KVI          DR
Sbjct: 335 NDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDR 393

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            R++Q+    LSNA+  + KGS  +    +  G ++   V + G  I ++    +F RF 
Sbjct: 394 NRVMQVLFNFLSNAIKNTEKGSITL--GLKHEGSWLKLYVSDTGCGISKEKLPQIFTRFE 451

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 Q  G GLGLSI +S +   GG + ++S     +T    +P +E
Sbjct: 452 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLPYQE 498


>gi|293371900|ref|ZP_06618304.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292633146|gb|EFF51723.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 400

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 146/272 (53%), Gaps = 21/272 (7%)

Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568
           EL+ D VL   E  I PL     +    +++    AE+   ++ + L+ A       D +
Sbjct: 123 ELMLDGVLHHYENRIFPLDKKYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRL 182

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ L+  +   +   +++QY E I  +S +LLNL NDIL
Sbjct: 183 KSAFLANMSHEIRTPLNAIVGFSKLITYA---TSAEEKNQYSEIIERNSEMLLNLFNDIL 239

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687
           DLA+++A  +K N   I L D+  +++Q    K  +N +++ ++ D     + + D  R+
Sbjct: 240 DLASLEADSLKFNIRPIKLIDICLQLEQQFWHKT-QNGVKL-ILDDVDTDMYTSGDWNRI 297

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
           +QI S +LSNA  F+ KG   I    R+  DF+ F VK++G  IP     ++F RF    
Sbjct: 298 IQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVD 355

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              Q  G GLGL++    +   GG + + S +
Sbjct: 356 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 385


>gi|209966659|ref|YP_002299574.1| histidine protein kinase DivJ [Rhodospirillum centenum SW]
 gi|209960125|gb|ACJ00762.1| histidine protein kinase DivJ [Rhodospirillum centenum SW]
          Length = 710

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDL 630
           F+  V +ELR+PL  IIGF+++L+   LGSL N++   Y + I      LL L ND++DL
Sbjct: 474 FLSAVGHELRTPLNAIIGFSEILRDELLGSLGNNRYRDYAQDIHDGGLHLLRLTNDLVDL 533

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++AG + L  S   +  L++   +  AT+     + +           +AD  RL QI
Sbjct: 534 ARIEAGQLDLRESWTDVQGLVDRCLRLGATRAAGLGVTLGADIRPPGLRVLADEARLRQI 593

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            + +L NA+  S +GS V ++A+ + G F   V + G  + E   ++    F      G+
Sbjct: 594 LANLLDNAIRHSERGSHVQVRASGEGGIFTLQVADQGVGMTEKEVRAALRPFGEAPAAGE 653

Query: 751 RRGV------GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G       GLGL +V  ++  HGGH++I+S     TT+   +P
Sbjct: 654 AEGTARQTAPGLGLPLVRGYVEAHGGHLAIASDPGAGTTVTVTLP 698


>gi|146341638|ref|YP_001206686.1| putative sensor histidine kinase membrane protein [Bradyrhizobium
           sp. ORS278]
 gi|146194444|emb|CAL78469.1| putative sensor histidine kinase, putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 532

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 11/234 (4%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G+       
Sbjct: 243 EQAKAISDEARYRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPV 300

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y EY   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ +    +  +    
Sbjct: 301 YKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVALVHVIADCHHLLKLRASSR 360

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724
            I I  + + K+    AD + + Q+   +LSNA+ F+ +G  + LKA    +G    SVK
Sbjct: 361 GITIHEVFEQKMPRLWADERAIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVK 420

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + GS IPE+    V   F   SN+ +   +G GLGL I ++ I +HGG  ++ S
Sbjct: 421 DTGSGIPENEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKS 474


>gi|83777315|gb|ABC46993.1| PAS/PAC domain-containing protein [Arthrospira platensis Ap-s]
          Length = 607

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 136/241 (56%), Gaps = 17/241 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E  + A+  K+ F+ ++S+E+R+P+  ++GF DLL+++     + + S Y++ I+
Sbjct: 301 LKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQST---ITDPQASSYIKAIA 357

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ ++AG ++L+Y  + +  ++NE++     K  E NI ++V I+
Sbjct: 358 SSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEHIFEQKAKEKNIELQVYIA 417

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------DNGDFIFSVKN 725
                S + D  RL QI   I+ N++ F+  GS  I+ +          ++ +   ++ +
Sbjct: 418 PEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASCSQLKPNHPYNSINLKIAITD 477

Query: 726 NGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGV 781
            G  I PED  K +F+ F  +  +  R+  G GLGL+I E  ++L GG + + S  ++G 
Sbjct: 478 TGIGISPEDQQK-IFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESQINQGS 536

Query: 782 T 782
           T
Sbjct: 537 T 537


>gi|325914828|ref|ZP_08177163.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538919|gb|EGD10580.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 1056

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L      L  A   K+ F+ ++S+ELR+PL + +  + LL  +K G+L+  Q +Y 
Sbjct: 348 AQGQLVRNGNELATASRYKSEFLANMSHELRTPLNSALILSKLLADNKDGTLSPDQVKYA 407

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L   T+  + +L  ++ +      +  + ++
Sbjct: 408 QAILSSNNDLLALINDILDLSKIEAGHVELADETVATSSVLQRLRDTFEPLARQKGLTLE 467

Query: 671 VISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D G     V D QRL QI   +L+NA+ F+ +G+  +   A   G  +F V + G  
Sbjct: 468 IGADAGAPTQLVVDNQRLQQILKNLLANAIKFTERGTVSLAIQAGAPGRVLFKVNDTGIG 527

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 528 IAREQTEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLE 587

Query: 788 IPS 790
           +P+
Sbjct: 588 VPT 590


>gi|75909154|ref|YP_323450.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702879|gb|ABA22555.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 573

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 136/258 (52%), Gaps = 8/258 (3%)

Query: 526 LEYSIIP--LPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           L  S+IP      +  L  ++ +TD  + E  L     A       K+ F+  +S+ELR+
Sbjct: 302 LSVSVIPGSYGEPEYFLAIIDDITDRKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRT 361

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G + LL+   +GSLN KQ +Y+  I +S   LL L+NDILDL+ V+AG  +L  
Sbjct: 362 PLNAIMGLSQLLQQEIVGSLNEKQQEYISCIYSSGEHLLALINDILDLSKVEAGKEELFL 421

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +++ D+ N+V  ++  +     +++    D +    +AD +R+ Q+   +L+NA+ F+
Sbjct: 422 IPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEASICIADDRRIKQMLLNLLTNAIKFT 481

Query: 703 SKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           S G  ++ +K   +  +FI S  + G  I  +    +F  F     R  R+  G GLGL+
Sbjct: 482 SVGEVSLTVKRVPEGINFIIS--DTGIGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLA 539

Query: 760 IVESFINLHGGHVSISSS 777
           +      LHGG V+++S+
Sbjct: 540 LTRKLARLHGGDVTVTST 557


>gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1769

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            +N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ L     G +N +Q + ++ +  S+
Sbjct: 1365 RNQELIRATRLKDEFLANMSHELRTPLNAILGMTEGLHEEVFGPVNDRQLKALQTVERSA 1424

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            + LL L+NDILD+A +++G ++L  S   +  L       I  +  +  I++ V     L
Sbjct: 1425 SHLLALINDILDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLNL 1484

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARD-NGD---FIFSVKNNGSS 729
               + D +R+ Q+   +L+NA+ F+ +G +    VIL   R+  G+     FSV++ G  
Sbjct: 1485 PDIILDERRIRQVLINLLNNAVKFTPEGGSITLEVILPPPREAEGESPYLRFSVRDTGIG 1544

Query: 730  IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I  +  K +F  F  + +A   Q +G GLGL++ +  + LHGG V ++S
Sbjct: 1545 ISPENIKKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTS 1593


>gi|303248510|ref|ZP_07334768.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490130|gb|EFL50050.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1066

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 11/244 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   +T   E  R+ D +K +F  +VS+ELR+PLT I+G        +LG+  +      
Sbjct: 132 ANEEITRLYEQTRELDALKTNFFANVSHELRTPLTLILGSL----AKRLGAAETPPEARR 187

Query: 611 EY--ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +Y  +  ++ +LL  V D+LD+A +DAG M+L Y+   +      +     +   E  I 
Sbjct: 188 DYRVMERNAKLLLAHVTDLLDVARLDAGRMELRYARCDMARQARFMASCFESLARERGIS 247

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V +   L + V D +++ +I   +LSNA  F+  G  V ++ AR +G F  +V ++G 
Sbjct: 248 LTVDAPRALTAEV-DVEKVRRILQNLLSNAFKFTPDGGRVEMRLARTDGHFRLTVADDGP 306

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            IP+D  + VF RF      G+ R   G GLGL+I + F  LHGG V+++++  G     
Sbjct: 307 GIPDDQKQVVFERF-RQLDSGENRSHGGTGLGLAIAKEFALLHGGDVTLTTNPAGGAVFT 365

Query: 786 CRIP 789
             +P
Sbjct: 366 VTLP 369



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 131/274 (47%), Gaps = 29/274 (10%)

Query: 542 FVNVTDSV----RAERALTEKNEALRKADE--------------IKNSFVQHVSYELRSP 583
           F++V + +    RAE AL    + L +A E               K+SF+ ++S+E+R+P
Sbjct: 651 FISVIEDIDRRKRAEEALLRSRDELARAAEQAKQLASRAEAASLAKSSFLANMSHEIRTP 710

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  ++G   LLKT+   +L+ +Q QY +    S   L  L+ DILDL+ ++A  + L+ +
Sbjct: 711 LNGLMGMMQLLKTT---ALDDEQLQYADMAIRSGGRLTRLLGDILDLSRIEAARLTLHVA 767

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
              L D+   + ++ A    E  + +  +++  L  + + D  RL QI   +  NAM F+
Sbjct: 768 PFSLADVFAAITETFAPLALEKGLPLVCLANPDLPRNVIGDETRLRQILFNLAGNAMKFT 827

Query: 703 SKGSTVI-----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
             G   +     L         +F+V + G  IP+D   +V   F  V + +   ++G G
Sbjct: 828 VAGEVRVEGWSLLPLPDGRARLLFAVSDTGVGIPDDKLDAVGEAFTQVESTYTRDQQGAG 887

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I      L GG ++I S     TT+   +P
Sbjct: 888 LGLAICRELTRLMGGSLTIESELGVGTTVWLMLP 921


>gi|167762689|ref|ZP_02434816.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
 gi|167699029|gb|EDS15608.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
          Length = 906

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 132/246 (53%), Gaps = 7/246 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R +R L    E    +D++K++F+ ++S+E+R+PL  I+GF+ ++  S   +  
Sbjct: 488 DITEMERMKRELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDA 544

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y + + A++  LL L+N+ILDL+ ++AGI++   + + L+ L  E+  ++  +  
Sbjct: 545 EERQNYYDIVEANNERLLQLINEILDLSKIEAGIVEFTITPVRLHPLCKEIHDALKFRCP 604

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E    +   SD ++ +   D+ R+ Q+ S ++ NA  F+++GS V     R   +  F V
Sbjct: 605 EGVELVYEASDEEI-TVEGDKNRIFQVISNLIGNAFKFTTRGS-VGYGYRRKGNEIEFYV 662

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I  D    VF RFV      Q  G GLGLSI ++ I   GG +S+ S     TT
Sbjct: 663 SDTGIGIQTDKLAKVFERFVKVNTFAQ--GTGLGLSICKTIIERLGGTISVCSEVGKGTT 720

Query: 784 INCRIP 789
               +P
Sbjct: 721 FTFTLP 726


>gi|319781102|ref|YP_004140578.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 779

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 147/294 (50%), Gaps = 22/294 (7%)

Query: 498 DLFAA-----IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRA 551
           DLFA      + T+ DDER     +    SD +L ++   L  A  ++ F +     V  
Sbjct: 158 DLFAQPMLVRVRTAMDDERHLADAS----SDRLLLWASGILFAALAIVAFWIFRPMEVAI 213

Query: 552 ERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            RA  E  E+L KA   D  K+ F+ ++S+E+R+P+  ++G  +LL  +    L  +Q  
Sbjct: 214 RRAFAESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---DLTPRQKT 270

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + + I  S   LL ++NDILD + ++AG + L+ +   L++ + +V   ++ ++ E N+ 
Sbjct: 271 FTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNLE 330

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVK 724
           + V  D +L +  V D  R  QI + +L NA+ F+ KG  +I        D +     V+
Sbjct: 331 LIVRVDPRLPAHVVGDAGRFRQIITNLLGNAVKFTEKGHVLIDVGGEIVNDVVQLKIRVE 390

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  IP +  ++VF +F        RR  G GLGL+I    ++L  G + + S
Sbjct: 391 DTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVES 444


>gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG6]
 gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG6]
          Length = 906

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 170/357 (47%), Gaps = 30/357 (8%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP----GTHIRNIAATCSRYYNESD 495
           I +L  GV V   D R+ L N  F +++      + P    G    ++A   +     S+
Sbjct: 270 IANLQAGVLVEDDDCRLTLVNQTFCTIFGLS---MPPDALIGMDCYDVARMIAPSLEHSE 326

Query: 496 GW-DLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT----MLTFVNVTDSV 549
            +   F  I+    ++R+ + G +  ++D   LE   +P+         +  + +V++ V
Sbjct: 327 SFFTHFQQIL----EQRQPVTGYMVRMADGRSLECDFVPVFEDDGYHGHLWLYRDVSERV 382

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L    EA   A   K+SF+  +S+E+R+P+  +IG T L+  +    L  +Q QY
Sbjct: 383 RGTAELVRAKEAAEAATMAKSSFLATMSHEIRTPMNAVIGMTTLMLDT---DLTREQRQY 439

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  S  +LL L+N+ILD + +++G M+L      L+  + EV + +  K  E  I +
Sbjct: 440 AETIRTSGDMLLALINNILDFSKIESGHMELEQQPFSLHACIEEVNELLGPKAAEKGIVL 499

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI---F 721
             +  G++ + ++ D  R+ QI   ++SNA+ F++ G   +  +AR +    G+ +    
Sbjct: 500 TGMVSGQVPAMISGDSTRVRQILVNLISNAIKFTNVGEVTVRASARPDEALSGEHLIITI 559

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +V + G  IPED    +F  F        RR  G GLGL+I      L GG +++ S
Sbjct: 560 TVADTGIGIPEDRMDRLFRPFSQIDASTTRRFGGTGLGLAISRRLSELMGGSITVQS 616


>gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 618

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 122/211 (57%), Gaps = 3/211 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+ELR+PL +IIGFT++L+    G+LN KQ +Y++ I  S+  LLNL+
Sbjct: 384 ANRAKSEFLANMSHELRTPLNSIIGFTEVLQDQLFGTLNEKQLEYLKDIHDSAKHLLNLI 443

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           NDILDL+ ++ G  +L  S   ++D++N        K  ++ I++   IS     +  AD
Sbjct: 444 NDILDLSKIEEGKTELELSEFRVSDVVNVSLIMFKEKASKHGIKLDAEISKEADITVTAD 503

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
            +++ Q+   ++SNA+ F+  G +V + A R        V++ G  I ++    +F  F 
Sbjct: 504 ERKIKQVLFNLVSNAVKFTPDGGSVKITAERKEDMIEIVVEDTGIGIKKEDRDKLFQPFS 563

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +   +  + +G GLGL++ +S + LHGG +
Sbjct: 564 QLETTYTKKYQGTGLGLALSKSLVELHGGKI 594


>gi|160899786|ref|YP_001565368.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160365370|gb|ABX36983.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1287

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 166/356 (46%), Gaps = 32/356 (8%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            ID +  GV V    G + LSN           +R  P    R I +T +       GWD 
Sbjct: 795  IDQMPAGVGVSDMSGTMVLSNAIM--------DRFVP----RAIPSTLADRMPRWKGWDD 842

Query: 500  FAAIITSFD-DERKSLQGT-----LELL--SDSVLEY----SIIPLPNAQTMLTFVNVTD 547
                I   +   +++L+G      LE+L   D   E+    S  PL +    L  +    
Sbjct: 843  KGQPIAPENWPGKRALRGEVVMPGLEMLHTDDDGREWWMRVSCAPLRDDDGQL--IGTCS 900

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             ++    L +    L++AD  K+ F+  +++ELR+PL  I     +LK +  G  + + S
Sbjct: 901  VIQDITELKQAEHHLKEADRRKDEFLATLAHELRNPLAPISHGLQILKRTASGDDSVRHS 960

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
               E +      ++ +V+D+L+++ +  G ++L    + LND+L  V  +    M   + 
Sbjct: 961  H--EMLERQVNHMIRMVDDLLEVSRITTGKVQLRKELVDLNDVLQGVVAASGAVMEAGSH 1018

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            ++++       S +AD  RL Q+ S +L+NA  +S  G  ++L A  D    + SV++NG
Sbjct: 1019 QLRLELPAAPVSLLADPMRLAQMVSNLLNNAAKYSHSGGHIVLAAWTDGAQAVVSVRDNG 1078

Query: 728  SSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              IP  +   VF+ F+    N  RGQ  G+G+GL++V S + +HGG V   S  +G
Sbjct: 1079 IGIPPALLGKVFDLFMQVDRNGRRGQ-GGLGIGLTLVRSLVEMHGGSVQALSEGKG 1133



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYIS 614
             + +AL + D  K  F  ++S+ELR+PLT I+G   D L+    G + + Q+Q    I 
Sbjct: 355 ARRAKALAEVDHAKTVFFSNISHELRTPLTLILGPLEDALREHG-GQVPAGQTQM---IH 410

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  L  LVN +LD + ++AG M+ +Y    L     E+     + + +  +R++V   
Sbjct: 411 RNALRLQKLVNALLDFSRIEAGRMQASYEPTDLARTTAELASMFRSAVEQAGLRLRVDCP 470

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI----------FSV 723
              G    DR    +I   +LSNA  F+ +G   V L+   D  D             SV
Sbjct: 471 PLDGPVHVDRDMYEKIVLNLLSNAFKFTLQGEIAVALRDVPDVHDAHGAGGANGAVELSV 530

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + GS I       +F RF     +  R   G G+GL++V+    LHGG V++SS++   
Sbjct: 531 TDTGSGIAPQHLPHLFQRFHRIPGKPARTHEGTGIGLAMVQELARLHGGTVTVSSTEGEG 590

Query: 782 TTINCRIP 789
           +    R+P
Sbjct: 591 SRFTVRLP 598


>gi|150398896|ref|YP_001322663.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150011599|gb|ABR54051.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 620

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 141/264 (53%), Gaps = 18/264 (6%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT--EKNEALRKADEIKNSFVQH 575
           LELLS+S              M   + +++    +RAL   EKN  L+K D++K+  +  
Sbjct: 352 LELLSNSF-----------DKMAEKIAISNKELEKRALELEEKNTELKKLDDLKSDLIAI 400

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+E+R+PLT+I G+ +L+    +G +N+ Q + +     +   L  L++ +LDL+ +  
Sbjct: 401 VSHEIRTPLTSIKGYVELVLDEAVGKINNSQRKCLTTARENVVRLNRLISSMLDLSKLAK 460

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++++   I +   ++EV   +     E NI I +  D  +    AD+ R+ Q+F  ++
Sbjct: 461 GELEMHREEINIKKTIDEVIDDLKPISAEKNINITLEIDDII--INADKDRMKQVFINLI 518

Query: 696 SNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
            NA+ FS +   + +K   + +GD   +VK+NG  IP+D  + VF+RF       +R  +
Sbjct: 519 ENAIKFSPENEIIEIKGKEEYHGDVSITVKDNGEGIPKDKLEKVFDRFYQADLSPKRKGK 578

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL++ +S I  HGG + + S
Sbjct: 579 GTGLGLAVCKSIIQAHGGSIWVKS 602


>gi|298376642|ref|ZP_06986597.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266520|gb|EFI08178.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 533

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 136/231 (58%), Gaps = 13/231 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D +K++F+ ++S+E+R+PL  I+GF+ LL  S       ++ +Y+  I +S+  LL L
Sbjct: 308 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 364

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681
           + DILD++ +++G M+  Y+T+ L+++    +Q+ A ++  +   +KVI  SDG     V
Sbjct: 365 IGDILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVVPD---VKVIFESDGNDYCIV 421

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +++ RL Q+ +  LSNA+ F+S GS        D+G +++ V + G  I ++   S+FNR
Sbjct: 422 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 480

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           FV  N+    ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 481 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 528


>gi|119494078|ref|ZP_01624621.1| Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452180|gb|EAW33383.1| Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1139

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 30/265 (11%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  R  + L  KN  L + + +K+ F+  +S+EL++PLT ++G + LLK   LGSLN 
Sbjct: 343 ITEQHRIAQELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDQALGSLND 402

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q++Y + I  S   L+ +VNDILDL  ++ G ++L    + +  +     + IA + H 
Sbjct: 403 RQARYAKLIHQSGRHLMMVVNDILDLTRMETGQLELIPEPVQIRAICQRAFE-IAGQHHS 461

Query: 665 N--------------------------NIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           N                            R  +  +  L + VAD  RL Q+   +LSNA
Sbjct: 462 NADNNSKSSSSTQKNASDSPSPNPPKPQERFILDIEPSLETIVADELRLRQMLVNLLSNA 521

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           + F+   S + L+ +       F++ + G  IPED    +F +F        R+  G GL
Sbjct: 522 LKFTPDDSQIGLQVSYWENWIGFTIWDKGIGIPEDKQHLIFQKFQQLESPLTRKFEGTGL 581

Query: 757 GLSIVESFINLHGGHVS-ISSSDEG 780
           GL + +    LHGG VS IS  D+G
Sbjct: 582 GLVLTQRLARLHGGDVSFISKQDQG 606


>gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 521

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E N  L +A   K+ F+  +S+ELR+PLT+II FT+LL       L  +Q + +  
Sbjct: 283 RELEEANRELERASRYKSEFLTMISHELRTPLTSIIAFTELLLNDP--RLAPEQRESLSE 340

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  SS  LL ++ ++LD + ++AG +KL    + L DL+ +  ++I     +  I + + 
Sbjct: 341 VLESSQKLLGMITNLLDYSRLEAGKVKLFREVLDLRDLIRDGVRTIQPLAAKKRIMLSMD 400

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              ++    AD  R+ Q+   +LSNA+ F+ +G  V ++   D  +   +V++ G  +PE
Sbjct: 401 CAPEVPLVHADPLRISQVLLNLLSNAVKFTPEGGRVAVECRADQREVRVTVRDTGPGVPE 460

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  + +F  F     +G+  G GLGL++  S +  H G + + S
Sbjct: 461 EEQELIFQPFRQGREKGRPEGWGLGLALSASLVRAHDGRIWVES 504


>gi|67922197|ref|ZP_00515711.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67855900|gb|EAM51145.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 796

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 136/248 (54%), Gaps = 16/248 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK++    A++ K +F+ ++S+E+R+PL  I+GF+DLL    +   N    Q + +  
Sbjct: 509 LQEKSKQAEAANKAKTNFLANMSHEIRTPLNAILGFSDLLSQKIIDPENVNHLQSIIF-- 566

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL L+NDI +L  +++GI+K+   T+ L +++ ++    + K ++ NI++ V  +
Sbjct: 567 -SSNNLLALINDIFELIRLESGIVKVESETVNLTEIIRQIYYKFSEKANQKNIKLIVNLN 625

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGDFIFSV 723
             +   +  D+ +L QI + +LSNA+ F+  GS  +          LK  ++N   +  +
Sbjct: 626 KNIPDILEFDKLKLYQIINNLLSNAIKFTKLGSVKVDVWANYFQSDLKTRQENCSIVIRI 685

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I ++  K +F+RF  VS     +  G+GLGL++ +  I L  G++ + S  E  
Sbjct: 686 KDTGIGISQEKQKIIFDRFTQVSQETNREYEGIGLGLTLTQKMIQLLEGNLKLESELEKG 745

Query: 782 TTINCRIP 789
           TTI   +P
Sbjct: 746 TTITVTLP 753


>gi|75906587|ref|YP_320883.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
 gi|75700312|gb|ABA19988.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
          Length = 1184

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+ IK+ F+  +S+ELRSPL  I+G++ +L+T +L    +K  Q +E I  ++ +   L+
Sbjct: 812  ANRIKDEFLAVLSHELRSPLNPILGWSRILRTKQLSP--TKVDQALETIERNAKLQAQLI 869

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
             D+LD++ +  G M LN + + L   +    +++       NI I+       G+ V D+
Sbjct: 870  EDLLDVSRILQGKMTLNVAPVNLAATITAALETVQLAAEAKNIHIQTTLKPIAGNVVGDQ 929

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
             RL Q+   +LSNA+ F+  G  + ++ A+ N      VK++G  I  +    VF  F  
Sbjct: 930  NRLQQVIWNLLSNAVKFTPSGGQIEVQLAQVNLYAQIQVKDSGKGIAREFLPYVFEYFRQ 989

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                  R+  G+GLGL+IV  F  LHGG V +SS  + +  T   R+P
Sbjct: 990  EDGATTRKFGGLGLGLAIVRHFTELHGGTVHVSSLGQDLGATFTVRLP 1037


>gi|317405401|gb|EFV85716.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 744

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 4/235 (1%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E   ALR A+E K+ F+  +++ELR+PL  +     LL+ S++ +  + +    E ++  
Sbjct: 348 ETQAALRDANERKDEFLAMLAHELRNPLAPLHNGLHLLRHSEVDAAGTVRVH--EMLARQ 405

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            + +  LV+D+LD+A +++G + L  +++ L +LL    ++    +      + V    +
Sbjct: 406 VSHIARLVDDLLDIARINSGKILLRKASVDLVELLRNALEASRGPIEAAGHTVSVTLPEQ 465

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMC 735
                AD  RL Q+ S +L+NA  ++ +G  +ILK  +D  G+FI SV++NG  IP DM 
Sbjct: 466 PVMMQADAVRLTQVVSNLLNNAAKYTDRGGHIILKGTQDAAGEFILSVRDNGRGIPVDML 525

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-INCRIP 789
             VF  FV    R    G+G+GL++V   + LHGG V  +S   G    I  R+P
Sbjct: 526 TRVFEPFVQVDGRRGSGGLGVGLTLVARLVALHGGSVRAASQGPGTGCEIVVRLP 580



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 16/181 (8%)

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVN +LD + ++ G M        L     E   +  + M    + + V  D  + +
Sbjct: 7   LQKLVNSLLDFSRIEGGGMVARLQPTDLARATQEHASAFRSAMEGAGLALSVQCD-AVPT 65

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSV 738
            + DR    +I   +LSNA  ++ +GS  +  A RD+GD  + SV++ G  I      ++
Sbjct: 66  VLIDRDWYERIVLNLLSNAFKYTLRGSIDV--ALRDSGDEVVLSVRDTGVGIARSDLANI 123

Query: 739 FNRFVSNAHRGQ------RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPSK 791
           F RF    HRGQ        G G+GL++V   + L GG +S+  S+ GV ++    +P K
Sbjct: 124 FQRF----HRGQSPAARSHEGSGIGLALVRELVKLLGGAISV-DSEPGVGSVFTVTLPKK 178

Query: 792 E 792
           +
Sbjct: 179 Q 179


>gi|254473454|ref|ZP_05086851.1| histidine kinase sensor protein [Pseudovibrio sp. JE062]
 gi|211957570|gb|EEA92773.1| histidine kinase sensor protein [Pseudovibrio sp. JE062]
          Length = 463

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 559 NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--- 612
            EA R+A+E    K  F+  +S+ELR+PL  I+GF++++K   LG ++++   Y++Y   
Sbjct: 197 QEARRRAEEANLAKTRFLATMSHELRTPLNAILGFSEVMKDEVLGPMHNQ--TYLDYSKD 254

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LLNL+N+ILDL+ ++AG  +L    + L D+    K  +  +    NI I  +
Sbjct: 255 INQSGQHLLNLINEILDLSRIEAGRYELQEEPVCLRDVAAACKHMMHMRAAAKNIEIHEV 314

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI 730
            +  L    AD + L Q+   +L+NA+ F+     + +    D   G +I SV + G+ I
Sbjct: 315 YEKGLSKVWADEKALRQMVLNLLTNAVKFTPPEGEISIHVGIDGAGGQYI-SVSDTGAGI 373

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE+    V   F   + A +   +G GLGLSIV++  ++H G   ++S     T     +
Sbjct: 374 PEEEIPVVLQAFGQGTQAIQDAEQGTGLGLSIVQALAHMHEGEFKLASKLREGTQATISL 433

Query: 789 PSK 791
           P+K
Sbjct: 434 PAK 436


>gi|149908193|ref|ZP_01896857.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
 gi|149808735|gb|EDM68668.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
          Length = 742

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 129/229 (56%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +T++ +   KA+  K++F+ ++S+E+R+PL  IIG  ++LK S L  +   Q  Y+  I 
Sbjct: 244 ITQEKDNANKANRAKSTFLANMSHEIRTPLNGIIGMAEILKDSPLSPI---QKDYLMTID 300

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS  LL L+ND+LDL+ +++G + ++  T  + +++ +    IA K  E NI + +  D
Sbjct: 301 SSSQTLLMLINDVLDLSKIESGNLVISPHTSNVKEVMFDTASLIAVKAQEKNIELDIQID 360

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSS 729
            +L   V  D  +L Q+   + SNA+ F++KG  T+ L++   + D I   FSVK+ G  
Sbjct: 361 PELPELVKLDEHKLRQVLMNLASNAVKFTAKGKITLTLQSKVVDADHIALSFSVKDTGIG 420

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I       +F  F    +   R   G GLGLSI    ++L GG+++I+S
Sbjct: 421 IESGKHSKIFEAFQQEDNNTTRHFGGTGLGLSISAKIVSLMGGYIAITS 469


>gi|332527608|ref|ZP_08403655.1| sensor histidine kinase/response regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332112011|gb|EGJ11988.1| sensor histidine kinase/response regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 752

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 139/256 (54%), Gaps = 18/256 (7%)

Query: 550 RAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           R   AL E  E LR+A          K++F+ ++S+E+R+P   ++G   LL+ +    L
Sbjct: 211 RRRAALEELAEHLRQARRDAEAASEAKSAFLANMSHEIRTPFHGLLGMLSLLRET---GL 267

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q  Y+   + S+  LL ++NDILD++ +++G M L  + + L  LL +V+  +  + 
Sbjct: 268 NQQQVSYLRTATESADHLLAILNDILDMSQLESGRMVLMPAPVELRALLRDVEALMRPQA 327

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
           H  ++ + + +D  L   V  D  R+ Q+   +LSNA+ FS +G+ V+L    + GD   
Sbjct: 328 HAKSLALHIAADPALPERVLCDATRVKQVLFNLLSNAIKFSDQGA-VVLDVQAEGGDGAA 386

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
             +F+V + G  I E    ++F+RFV +++ R +R  G GLGL I  +   L GG ++++
Sbjct: 387 ELVFTVSDQGVGIDEATLATLFHRFVQADSSRSRRHGGAGLGLEISRNLARLMGGDITVT 446

Query: 776 SSDEGVTTINCRIPSK 791
           S     ++   R+P K
Sbjct: 447 SQPGQGSSFRLRMPLK 462


>gi|301164155|emb|CBW23711.1| putative two-component system, sensor kinase [Bacteroides fragilis
           638R]
          Length = 543

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 148/260 (56%), Gaps = 16/260 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F ++T+ ++ ER L E  E   +++ +K++F+ ++S+E+R+PL  IIGF+DL+  + 
Sbjct: 285 LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 344

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ +Y+  +++++ +LL L++DILDL+ ++AG M  +Y+   +N+L+    + I
Sbjct: 345 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYAPTDINELM----EDI 397

Query: 659 ATKMHENNIRIKV---ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713
             +M + N R +V    ++ + G  +  DR RL Q+   +++NAM F+S+GS T+  +  
Sbjct: 398 CLQMQQKNQRPEVQIMFTEKESGCVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLT 457

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           R   +  F VK+ G  IP D    VF RFV  N      +G GLGL+I    I   GG +
Sbjct: 458 RQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF---IKGTGLGLAICRVIIERLGGTI 514

Query: 773 SISSSDEGVTTINCRIPSKE 792
            + + +        R+P +E
Sbjct: 515 GVETREGKGACFWFRLPVRE 534


>gi|217077839|ref|YP_002335557.1| sensor histidine kinase [Thermosipho africanus TCF52B]
 gi|217037694|gb|ACJ76216.1| sensor histidine kinase [Thermosipho africanus TCF52B]
          Length = 465

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 51/367 (13%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           K   + ++ ++EG+ V   +GRI+  N   + +       L    HI     +       
Sbjct: 140 KFMSDVLNSINEGIFVLNENGRIEFLNDFAKEI-------LDSAPHINEFLKS------- 185

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                       + +DERK L         ++++         + ++TF NVT  +  E+
Sbjct: 186 ------------AINDERKILTKEFNNHYYTIVKVKFNFSNETKYVVTFNNVTYEIELEK 233

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                   L++ D++K  FV ++S+ELR+PLT I  +T+ L   ++      Q +++E +
Sbjct: 234 --------LKQLDKMKTEFVANISHELRTPLTAIKAYTETLLNMEVDR--ESQREFLETV 283

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L +L+ND+LD   +++G M+L YS   L +L+ EV +++     +  ++I V  
Sbjct: 284 YEQSERLESLLNDLLDFTLIESGTMELEYSEFDLCELIKEVVENLKQLAEKYKVKINVSC 343

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSI 730
           +    S  AD++R+ Q    ++ N++ FS K      V +   +   +    +++NG  I
Sbjct: 344 ES--ISISADKRRIKQAIHNLVDNSIKFSDKSKEERYVNISVEKKEENLSIIIEDNGIGI 401

Query: 731 PEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            ++  + +F +F    +RG R       G GLGL+IV+  I LHGG ++++S+    TT 
Sbjct: 402 SQEDKEKIFEKF----YRGDRSLTYEVPGTGLGLTIVQEIIKLHGGKINVNSTLGEGTTF 457

Query: 785 NCRIPSK 791
              IP +
Sbjct: 458 ELVIPYR 464


>gi|77748572|ref|NP_641608.2| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 290

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 43  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 102

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +V+D+LDLA ++AG + ++     L DL   ++          +  +     
Sbjct: 103 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDMGSTTLIFEDP 162

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP ++
Sbjct: 163 PVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAEL 222

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 223 HEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 266


>gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293326569|dbj|BAJ01300.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1486

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 169/375 (45%), Gaps = 22/375 (5%)

Query: 419 LTVQVDLETKYNTLVKVQ------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + ++ D+  +  T + V+        T++    G+ V   DG I  +N  F  LW   + 
Sbjct: 541 IAIRADITERKRTEIAVKEALSLMNATLESTDNGILVTSIDGEILRTNCQFSHLWGVAKE 600

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L  G + R I         + + +     +   ++D       T+ L+   V E +  P
Sbjct: 601 LLDKGVNDRVILKQIKVLLKKPETF--LKRVEEIYEDRELEAFDTIALIDGRVFERASSP 658

Query: 533 LPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +           +F ++T+    + AL +  E    A + K+ F+  +S+E+R+P+  +I
Sbjct: 659 MEVDGEYFGRVWSFRDITERTENQNALLQAKEEAELATKAKSEFLASMSHEIRTPMNGVI 718

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL  SK   L   Q++ V    +S+  LL+L+NDILD + +DAG ++L      L 
Sbjct: 719 GMLGLLSNSK---LTEYQNRRVSIAQSSAQSLLSLINDILDYSKIDAGKLELEQIDFNLR 775

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
            +L +  + IA +     + + +   G   S V  D  RL Q  + +  NA+ F+ +G  
Sbjct: 776 GMLGDFAEGIAHQAQNKKLELILDLKGVEQSMVTGDPGRLRQAITNLTGNAIKFTKQGEV 835

Query: 708 VI---LKAARDNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
           V+   LK A +   + I SV + G  IP D    +F  F        R+  G GLGL+IV
Sbjct: 836 VVRAELKPAHEGKWWLICSVSDTGIGIPADKIDGLFKSFSQVDASTTRKYGGTGLGLAIV 895

Query: 762 ESFINLHGGHVSISS 776
           +    L GG VS+SS
Sbjct: 896 KKISRLMGGDVSVSS 910


>gi|289670369|ref|ZP_06491444.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1057

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 150/296 (50%), Gaps = 20/296 (6%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEALRK 564
            +++R+SLQ      S S LE     L   QT +     T ++ A+R   L  +N+ +R 
Sbjct: 303 LEEQRRSLQQ-----SQSDLEVQQAEL--EQTNVQLEERTQALEAQRQALLIAQNQLVRN 355

Query: 565 ADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           ++E+      K+ F+ ++S+ELR+PL + +    LL  +K G+L+++Q +Y + I +S+ 
Sbjct: 356 SNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSTEQVKYAQAILSSNN 415

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--ISDGK 676
            LL L+NDILDL+ ++AG ++L   T+    +L  ++++      +  + +++  ++D  
Sbjct: 416 DLLTLINDILDLSKIEAGHVELADETVATTSVLQRLRETFEPLARQKGLALEIAAVADAP 475

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
               V D QRL QI   +L+NA+ F+  G   +   A   G   F+V + G  I  +  +
Sbjct: 476 T-QLVVDNQRLQQILKNLLANAIKFTEHGKVSLSVQAHAPGRVRFAVTDTGIGIAREQSE 534

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F  F       +RR  G GLGLSI        GG +S+ S     +     +P+
Sbjct: 535 VIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLELPT 590


>gi|291570267|dbj|BAI92539.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 623

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 19/242 (7%)

Query: 552 ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKL 599
           ER + E+ +AL  A       +  K+ F+  +S+ELR+PLT++IG +  L     +    
Sbjct: 223 ERRVKERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPENF 282

Query: 600 GSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            +L   KQ  Y++ I  S   LL L+NDILDL+ V++G   L  S   L  +  +   ++
Sbjct: 283 PALPLEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKISQFSLGKMAQQCLHTL 342

Query: 659 ATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                E   N+ +K+  D  L  F AD +R+ QI   +LSNA+ F+ KG  V L  +R +
Sbjct: 343 RDFAKEKGVNLYLKMKVDQDL--FRADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSRKD 400

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              IF VK+ G  I ++    +F +F  + + +R Q  G GLGL++ +  + LHGG +  
Sbjct: 401 KMAIFQVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVELHGGSIQF 460

Query: 775 SS 776
            S
Sbjct: 461 ES 462


>gi|163742422|ref|ZP_02149809.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
 gi|161384372|gb|EDQ08754.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
          Length = 759

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 11/239 (4%)

Query: 546 TDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           T S R ER  AL E  +A   A+  K+ F+ ++S+E+R+P+  +IG  +L+  +    L+
Sbjct: 215 TFSERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET---DLD 271

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q+ Y E IS S + LL ++NDIL+ + ++AG M+L  +   L   + +V   ++ K  
Sbjct: 272 EDQTMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAA 331

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
           E N+ + +  D  L   +  D  R+ QI + +  NA+ F+ KG   I  +   + D    
Sbjct: 332 EKNVEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTAL 391

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             SV + G+ IP+D    +FN F     A      G GLGL+I    + L GG +S+ S
Sbjct: 392 RISVTDTGAGIPDDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQS 450


>gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1138

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 159/366 (43%), Gaps = 35/366 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--------PGTHIRNIAATCSRYY 491
           +D  +EG+    PDG I+ +NPA  ++++     L         P     + A T     
Sbjct: 299 VDTAAEGIITTRPDGVIEAANPAAHAIFRHAPGELVGRSVVELLPADRREDAARTLDEIA 358

Query: 492 NESDGWDLFA-----AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFV 543
           +     D  A     A+  + D E     G  E      L YS+  +  A   L      
Sbjct: 359 HGRRHLDPTARGEAIALRPAVDGEAGGESGKTESFP---LAYSMALVKTAAGPLYAAILR 415

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  E       IK  F+  +S+E+R+P+  +IG   LL  +   +L 
Sbjct: 416 DLTEEKRLEHTLRDAKEQAEDGQRIKMEFLATMSHEIRTPMNGVIGMAGLLLDT---ALQ 472

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q  Y E I  S+  LL ++NDILD + +DAG ++L      L  L+  V + +A +  
Sbjct: 473 ADQRGYAETIRDSAESLLVVINDILDFSKIDAGRLELEIGEFELVPLVESVAEILAPRAV 532

Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDN--G 717
              + +   +  G  G+ + D  RL QI   +  NA+ F+  GS  IL   +A  DN  G
Sbjct: 533 AKGLDLASFVPPGLRGTLLGDAGRLRQILLNLAGNAVKFTDSGSVTILLNEEAPIDNDSG 592

Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           D       F V++ G  IPE+    +F  F        RR  G GLGL+I +    L GG
Sbjct: 593 DGGGVRVRFEVRDTGIGIPEEDRPRLFTMFSQVDSSPARRHGGTGLGLAICKRLTELMGG 652

Query: 771 HVSISS 776
            + + S
Sbjct: 653 RIGLDS 658


>gi|253996594|ref|YP_003048658.1| multi-sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
 gi|253983273|gb|ACT48131.1| multi-sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
          Length = 845

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 19/240 (7%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           E+ +TE+ E L+        AD+IK++F+  +S+ELR+PL +IIGFT ++     G LN+
Sbjct: 582 EKRVTERTEELQTALIRAEAADKIKSAFLATMSHELRTPLNSIIGFTGIILQGLAGPLNN 641

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q++ +  +  S+  LL L+ND+LD++ ++AG +++N  T  L  L+  V  S+   + +
Sbjct: 642 EQTKQLGMVRGSARHLLELINDVLDISKIEAGQLEVNSETFNLVALIERVVNSLTPMIEK 701

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNG 717
             + +      +LG  V+DR+RL QI   +++NA  F+ KGS  I       LK + D  
Sbjct: 702 KGLVLHTSISKELGEIVSDRRRLEQILINLVNNAAKFTEKGSITITAEIVNDLKDSLDTT 761

Query: 718 DFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              F   SV + G  I  D    +F  F  + +       G GLGL+I    + L GG +
Sbjct: 762 PTRFLKLSVIDTGIGIKPDDLDLLFKPFHQIDSGLSRLHEGTGLGLAICRRLLELMGGQI 821


>gi|237714293|ref|ZP_04544774.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408330|ref|ZP_06084877.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229445785|gb|EEO51576.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353882|gb|EEZ02975.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 926

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T +L   
Sbjct: 676 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 732

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 733 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 791

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E    ++++ D  L     ++DR R+ Q+ S  ++NAM F+S+GS  +    +D G+  
Sbjct: 792 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 847

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 848 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 901


>gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 835

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 14/235 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           + RAL ++    R   + K+ F+  +S+E+R+PL+ +IG ++LL     G L+ +Q ++ 
Sbjct: 258 SRRALEDEAREARATAQAKSEFLATMSHEIRTPLSGVIGMSELLLG---GRLSGEQREFA 314

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E ++ S+  LL+L+NDILD +  ++G ++L      L  L  +V Q + ++  +  I + 
Sbjct: 315 ETLNTSAEALLSLINDILDFSKFESGHLELEEVPFDLQALTEDVVQILGSRARKKRIDLI 374

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSV 723
              D  L   FV D  R+ QI   ++ NA+ F+ +G   +L A   NGD        F V
Sbjct: 375 ARYDNNLPRFFVGDPGRIRQILLNLVGNAVKFTERGH--VLLAVHHNGDSDDKIRLHFEV 432

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++ G  IPE+    +F+RF+       RR  G GLGL+I    +    G +S+SS
Sbjct: 433 EDTGIGIPENSLPHIFDRFIQVTSGEARRFGGTGLGLAISRQLVERMSGQISVSS 487


>gi|295087116|emb|CBK68639.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 637

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 14/289 (4%)

Query: 508 DDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           D + K ++  LE+  D  L Y    I P    + +    ++ D ++  + L E       
Sbjct: 222 DGKLKEIEYPLEV--DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAED 279

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD++K+ F+ ++S+E+R+PL  I+GF++++  ++      ++ +Y+E I  +S +LL L+
Sbjct: 280 ADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTES---EEEKMEYLEIIQRNSNLLLQLI 336

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDL+ +++G  ++++  + +  L+ EV++    KM ++N+ +KVI          DR
Sbjct: 337 NDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDR 395

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            R++Q+    LSNA+  + KGS  +    +  G ++   V + G  I ++    +F RF 
Sbjct: 396 NRVMQVLFNFLSNAIKNTEKGSITL--GLKHEGSWLKLYVSDTGCGISKEKLPQIFTRFE 453

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 Q  G GLGLSI +S +   GG + ++S     +T    +P +E
Sbjct: 454 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLPYQE 500


>gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 962

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 124/234 (52%), Gaps = 16/234 (6%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D++K+ FV  VS+ELR+PL +++GF +LL T KL     +Q +Y+  I   +T L  L+N
Sbjct: 585 DQMKSEFVSTVSHELRTPLASVLGFAELLLTKKLKP--ERQQRYIATIYQEATRLTALIN 642

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRI---KVISDGKLGSF 680
           D LDL  +++G        + ++ ++ ++ +   + + +H   + +   K +  G     
Sbjct: 643 DFLDLQRMESGRQTYELENVAIDQVIRDIFELHRVQSPLHRFELDLQTEKTVVSG----- 697

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D+ +L Q+F  ++SNA+ +S  G  V +   +D    +  V++ G  IP +    +F 
Sbjct: 698 --DQAKLHQVFLNLISNAVKYSPHGGHVRVGCRQDGNRLLVEVQDEGLGIPSEAIPHLFT 755

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F  V N+ R +  G GLGL+IV+  +++H G VS+ S     +T    +P  E
Sbjct: 756 KFYRVDNSDRREIGGTGLGLAIVQEIVHMHHGEVSVISESGKGSTFTVTLPLAE 809


>gi|294646444|ref|ZP_06724085.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|292638215|gb|EFF56592.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
          Length = 957

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T +L   
Sbjct: 707 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 763

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 764 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 822

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E    ++++ D  L     ++DR R+ Q+ S  ++NAM F+S+GS  +    +D G+  
Sbjct: 823 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 878

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 879 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 932


>gi|253699011|ref|YP_003020200.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251773861|gb|ACT16442.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 647

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD   AE  L    EA   A + K  F+ ++S+E+R+P+ +IIG T LL  ++L   +
Sbjct: 153 DITDRKGAEMELIVAREAAEAASKAKTEFLANMSHEIRTPMNSIIGMTQLLAYTEL---S 209

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q +YV+ I  SS  LL ++NDILDL+ V+AG ++L      L   +NE+ ++     H
Sbjct: 210 AEQKEYVDGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSLRQNINEIIRTQTAAAH 269

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGD 718
           E  +++KV I +    + V DR RL Q+    + NA+ F++ GS  +  A      D   
Sbjct: 270 EKGLQLKVFIPEEIPDALVGDRLRLKQVLLNTIGNAIKFTASGSIAVTVALAEKQEDAAR 329

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FS+ + G  I  +    +F  F        RR  G GLGLSI    + L GG +   S
Sbjct: 330 LTFSIADTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAES 389

Query: 777 SDEGVTTINCRIP 789
                +T +  IP
Sbjct: 390 RKNTGSTFHFEIP 402


>gi|262383010|ref|ZP_06076147.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295888|gb|EEY83819.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 732

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 130/238 (54%), Gaps = 7/238 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           + +T+  R E  L    +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L T+     
Sbjct: 484 LRITERKRIEEELLRARDKAEESNRLKSTFLANMSHEIRTPLNAIVGFSQILTTT---DD 540

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ Q+V  I +++ +LL L+ DILDL+ ++AG ++   + + LN L+NE++ S+  K+
Sbjct: 541 EEEKKQFVSIIESNNVLLLQLIGDILDLSKIEAGTLEFVRNEVDLNVLMNELESSMRLKI 600

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + + ++            D+ RL Q+   +L+NAM F+ +G         D     F 
Sbjct: 601 A-DTVELRFTDRMPSCRLYVDKNRLSQVLINLLTNAMKFTKEGYIHFGYRLVDEDTLEFY 659

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP++  +++F RF+   +     G GLGLSI +  +   GG + +  SDEG
Sbjct: 660 VSDTGCGIPKEQLRNIFERFIKLNNFVS--GTGLGLSICQVIVERMGGRIWV-ESDEG 714


>gi|237718855|ref|ZP_04549336.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451987|gb|EEO57778.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 407

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 145/272 (53%), Gaps = 21/272 (7%)

Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568
           EL+ D VL   E  I PL     +    +++    AE+   ++ + L+ A       D +
Sbjct: 130 ELMLDGVLHHYENRIFPLDKKYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRL 189

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ L+  +       +++QY E I  +S +LLNL NDIL
Sbjct: 190 KSAFLANMSHEIRTPLNAIVGFSKLITYATSAE---EKNQYSEIIERNSEMLLNLFNDIL 246

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687
           DLA+++A  +K N   I L D+  +++Q    K  +N +++ ++ D     + + D  R+
Sbjct: 247 DLASLEADSLKFNIRPIKLIDICLQLEQQFWHKT-QNGVKL-ILDDVDTDMYTSGDWNRI 304

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
           +QI S +LSNA  F+ KG   I    R+  DF+ F VK++G  IP     ++F RF    
Sbjct: 305 IQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVD 362

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              Q  G GLGL++    +   GG + + S +
Sbjct: 363 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 392


>gi|254475084|ref|ZP_05088470.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214029327|gb|EEB70162.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 843

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 12/229 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT+   A  KAD+ K+ F+ ++S+E+R+P+  I+G  D+L  +    L+++Q Q V+ + 
Sbjct: 448 LTQAKLAAEKADQAKSEFLANMSHEIRTPMNGIVGMADILANT---DLSAEQQQCVDTVR 504

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS+ LL ++NDILDL+ ++AG M+++     L   ++ V  ++  +M E  +       
Sbjct: 505 ESSSALLKIINDILDLSRLEAGKMEISPIDFDLRKCVDGVVDTLRPRMVEKGLTFTQTYT 564

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730
             L      D  RL QI   +L NA+ F+ +GS V L  +RD  D     F VK+ G  I
Sbjct: 565 ADLPELAHGDNGRLRQILLNLLGNAVKFTKEGS-VGLHVSRDKSDPYRMCFEVKDTGIGI 623

Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            ED  + +F RF S A     R   G GLGL+I        GG ++++S
Sbjct: 624 SEDQAEHIFERF-SQADAATTRHFGGTGLGLTISNILAERMGGQITLAS 671


>gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035393|gb|ABF62251.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 741

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 7/254 (2%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           ++ V++T+  RA  AL E       A+  K  F+ +VS+E+R+PL  ++G   +L  +KL
Sbjct: 340 ISLVDITERERAAEALREALSLAEAANRAKTQFLANVSHEIRTPLNGVLGMASVLGETKL 399

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              + +Q ++++ I  S  +LL  + D+LDL+ V+AG M L      L + L   +   +
Sbjct: 400 ---DEEQQEFLQVIEDSGQVLLTTIGDVLDLSKVEAGKMTLETKPFTLRNALEGARALFS 456

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +  E  I + + + D      + D  R  Q+   ++SNA+ F+  G+  I  A  +NG 
Sbjct: 457 ARAKEKGIGLHLEMHDDLPRVILGDDHRFRQVVHNLVSNAIKFTETGAVTISAAPAENGS 516

Query: 719 FIF-SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +   V + G  IP +    +F  F  V      +  G GLGLSI     +L GG + ++
Sbjct: 517 ILLVRVSDTGPGIPAEARDMIFQPFQQVEGGDARKFGGTGLGLSISRQLCHLMGGSLQVA 576

Query: 776 SSDEGVTTINCRIP 789
             +    T   R+P
Sbjct: 577 DDEPQGATFEIRLP 590


>gi|218248058|ref|YP_002373429.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218168536|gb|ACK67273.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 763

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 22/258 (8%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSL 602
           E+ + E+ + LR        A+  K+ F+ ++S+ELR+PLT IIG +  L   +++  SL
Sbjct: 362 EQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSL 421

Query: 603 N-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              KQ QY++ I  S   LL ++N+IL+ + ++AG     Y   +    L +  Q+I  K
Sbjct: 422 PLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAG----KYVLSIQQFSLQKAAQNIHKK 477

Query: 662 MHEN------NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +       N+++++  + +   F AD +RL QI   +L+NA+ F+ +G TVIL+  R+
Sbjct: 478 LRQEAVKRKINLQLELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWRE 537

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             + IF V++ G  I ++    +F  F  +  + R    G GLGL++ +  + LHGG + 
Sbjct: 538 GNEAIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIE 597

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S  +  +    R+P++
Sbjct: 598 VESILQEGSIFTVRLPNQ 615


>gi|294627008|ref|ZP_06705598.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598670|gb|EFF42817.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1068

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 137/265 (51%), Gaps = 11/265 (4%)

Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588
           QT +     T ++ A++   L  +N+ +R ++E+      K+ F+ ++S+ELR+PL + +
Sbjct: 337 QTNVQLEERTQALEAQKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 396

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
               LL  +K G+L+++Q +Y + I +S+  LL L+NDILDL+ ++AG ++L   T+V  
Sbjct: 397 ILAKLLADNKDGTLSAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTG 456

Query: 649 DLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +L  ++++      +  + +++  + G     V D QRL QI   +L+NA+ F+  G  
Sbjct: 457 SVLQRLRETFEPLARQKGLALEITAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKV 516

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +   A   G   F+V + G  I  +  + +F  F       +RR  G GLGLSI     
Sbjct: 517 GLTVQAHAPGRVRFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 576

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG +S+ S     +     +P+
Sbjct: 577 QRMGGSISVDSEPGRGSCFTLELPT 601


>gi|329961320|ref|ZP_08299466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328531926|gb|EGF58746.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 1040

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 535 NAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N QT++ + + +T+  + E  L        +++ +K++F+ ++S+E+R+PL  I+GF+ +
Sbjct: 645 NPQTLVGSSLVITERKKMEDDLISAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGI 704

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L + +      ++ +YV  I  ++ +LL L++DILDL+ ++AG M+  YS   LN ++ E
Sbjct: 705 LASIEE---EKEKQEYVSIIENNNALLLQLISDILDLSKIEAGTMEFIYSDFELNKIMAE 761

Query: 654 VKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++ S+  K+  N NI +       +    A+  RL QI   +++NA+ F+  GS +    
Sbjct: 762 LESSLRLKLPPNKNISLTFEPQLPVCYIHAEHNRLSQIIINLVTNAIKFTDAGS-IRFGY 820

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            + N    F V + G  IP+D  + +F RFV   +  Q  G GLGLSI  + +   GG +
Sbjct: 821 EKRNKILYFYVSDTGCGIPKDKKEEIFGRFVKLNNFAQ--GTGLGLSICRTLVQHMGGEI 878

Query: 773 SISSS 777
            + S+
Sbjct: 879 GLDSA 883


>gi|295086635|emb|CBK68158.1| GAF sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 926

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 136/239 (56%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T +L   
Sbjct: 676 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 732

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 733 -AERQEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKA 791

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E    ++++ D  L     ++DR R+ Q+ S  ++NAM F+S+GS  +    +D G+  
Sbjct: 792 KE---EVELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 847

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 848 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 901


>gi|302557886|ref|ZP_07310228.1| His Kinase A (phosphoacceptor) domain-containing protein
           [Streptomyces griseoflavus Tu4000]
 gi|302475504|gb|EFL38597.1| His Kinase A (phosphoacceptor) domain-containing protein
           [Streptomyces griseoflavus Tu4000]
          Length = 594

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL + +E   + DE +   V  +++ELR+PLTNI G+ D  +      L    S  +  +
Sbjct: 361 ALNDLSERRERTDEQRRVMVSDIAHELRTPLTNIRGWLDAAQDG----LAETDSALLTSL 416

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              + +L ++V+D+  LA  DAG ++L    + L DL+ ++  +         + I V +
Sbjct: 417 QEEAELLQHIVDDLQVLAAADAGTLRLRPEDLDLRDLIKQIVSAHRATAQAGGVEIAVHA 476

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L S  AD  RL Q+   +LSNA+  +     V L A R  G     VK+ GS I E 
Sbjct: 477 PDGL-SVHADPVRLRQVLGNLLSNAIRHTPPAGRVTLSARRVAGAVAIEVKDTGSGIREA 535

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               VF+RF        RR  G GLGLSIV   +  HGG VS++S     T    R+PS
Sbjct: 536 DLPRVFDRFWRAEQSRSRRTGGSGLGLSIVRQLVRAHGGDVSVASRPHVETVFLVRLPS 594


>gi|254412939|ref|ZP_05026711.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180103|gb|EDX75095.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1055

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 183/362 (50%), Gaps = 24/362 (6%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G+A+  P G++   N  F  L   EE+ L       +I     R    +D   L A   +
Sbjct: 467 GIALGTPSGQLIRVNQRFCDLVGYEESELL-QLSFPDITHPDDRAAELNDLTQLLAGQRS 525

Query: 506 SFDDERKSLQ--GTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           ++  E++ ++  G  + ++ +V L  + +  PN   +    ++    + E AL +  +A 
Sbjct: 526 TYSREKRFIRKDGQWQWVNVAVSLVRTWMDTPNY-IIGVVEDIQQRKQTEVALQQALDAA 584

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A+  K+ F+ ++S+ELR+PL  I+GFT L+  ++  SLN  Q  Y+  I+ S   LL+
Sbjct: 585 EAANHGKSEFLANMSHELRTPLNAILGFTQLM--ARDASLNQDQQDYLGIITRSGEHLLD 642

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-V 681
           L+N++L+++ ++AG + L+ ++  L  L++ + + +  K     +++ V     + ++ +
Sbjct: 643 LINNVLNMSKIEAGRISLSENSFDLYSLVDSIAEMLRLKALSKGVQLMVERTANVPNYGM 702

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------ARDNGD----FIFSVKNNGSS 729
           AD  +L QI   ++ NA+ F+S+G  VIL+         A  N D      F V++ G  
Sbjct: 703 ADEGKLRQILINLVGNAVKFTSQGR-VILRVQEISDRITAPTNTDTQSRLFFEVEDTGVG 761

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP D   ++F  FV    + R Q  G GLGL+I   F+ L GG ++I+S+    T +   
Sbjct: 762 IPPDELDTLFQAFVQTKTSQRSQ-SGTGLGLAISRRFVQLMGGDITINSTPGQGTLVKFD 820

Query: 788 IP 789
           IP
Sbjct: 821 IP 822


>gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 877

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 7/238 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              +T+  R E  L E  E    +   K +FV H+S+E+R+P+  ++G +++L  S    
Sbjct: 370 MTEITEQKRMEAELREAKERAEASSRAKMAFVSHISHEIRTPMNAVVGLSEMLLDS---C 426

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + +  + +E I  +S  L  ++ DILDLA V+AG ++L  S+  + DL   V   +  +
Sbjct: 427 EDPEIREDLELIHQASMSLTEILGDILDLAAVEAGKLRLEESSFSMEDLCAPVFSLMGAE 486

Query: 662 MHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                +  +  + DG  G FV D+ R+ Q+   +LSNA+ F+  GS V  + +   G  +
Sbjct: 487 AKRKGLEFRGKVEDGASGHFVGDQVRIRQLLWNLLSNAIKFTPSGS-VSARISASEGGVL 545

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F V + G  I E+    +F+ F        RR  G GLGL++ +  ++L GG + + S
Sbjct: 546 FEVSDTGVGIEEEQLDRIFDYFERGEELLTRRIPGTGLGLALCKKLVSLMGGAIRVRS 603


>gi|254415523|ref|ZP_05029283.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177704|gb|EDX72708.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1568

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 22/246 (8%)

Query: 550  RAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            R  + LTE+N AL KA +        K+ F+  +S+E+R+P+  +IG T LL  ++L   
Sbjct: 882  RQRQQLTEQNVALEKARQTAEAATQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTEL--- 938

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             S Q  + E I  S   LL ++NDILD + +++G M+L      L   + E    + TK 
Sbjct: 939  TSDQRYFAETIRNSGDALLTIINDILDFSKIESGKMELEEQPFELRTCIEEALDLLTTKA 998

Query: 663  HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARD 715
             E N+ +  + D +  +++A D  RL QI   ++SNA+ F+  G  +      IL    D
Sbjct: 999  AEKNLELAYLIDSQTPNWIAGDVTRLRQILVNLISNAVKFTPTGEVLVSVTAQILADEED 1058

Query: 716  NGD---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
             GD     F+VK+ G  IP D    +F  F  V ++   Q  G GLGL+I +    + GG
Sbjct: 1059 RGDRYQLQFAVKDTGIGIPVDRIHRLFKSFSQVDSSTSRQYGGTGLGLAICKRLCEMMGG 1118

Query: 771  HVSISS 776
             + + S
Sbjct: 1119 QMWVES 1124


>gi|52842360|ref|YP_096159.1| response regulator TutC [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|19880987|gb|AAM00615.1| response regulator TutC-like protein [Legionella pneumophila]
 gi|52629471|gb|AAU28212.1| response regulator TutC [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 816

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 12/247 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E N+ L + D+IK  F  +VS+ELR+PL  I+   ++L   K   L S     +
Sbjct: 177 ANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILDPLEMLLAEK--KLPSFVQNTL 234

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNI 667
             I  ++ ILL  VND+L+++ +DAG M L+Y+ I   DL+  ++Q+IA    ++ E  +
Sbjct: 235 RRIQNNAQILLKHVNDLLNISKLDAGKMILHYANI---DLVKLIQQTIALFEAQIPERKL 291

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
              +    +L + + D  ++  +   ILSNA+ F+ + + V ++  + N +     +++N
Sbjct: 292 VFSMDLPDELQAQI-DPDKIQHVLINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDN 350

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP D+C+++F RF        R   G GLGLSI + F+ LHGG +   ++  G    
Sbjct: 351 GPGIPSDLCETIFERFFQIEESTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIF 410

Query: 785 NCRIPSK 791
              +P K
Sbjct: 411 TIELPLK 417



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 22/223 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620
           ++KA++  + FV H S++L++PL  +      ++   LG + S+QS+ Y+  +   ++ +
Sbjct: 586 VKKAEDELDQFVYHASHDLKAPLPAMEHLISWIEED-LGEMLSEQSKKYLLLLRQRASRM 644

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV------KQSIATKMHENNIRIKVISD 674
             L++ +L  A   +G +     TI  + L+ ++       Q++  ++ +    + V++ 
Sbjct: 645 SKLLDGLLKYAQ--SGYVFDKVRTIHTDRLITDIIKKLNPPQTVTFQLEDT---LPVLNT 699

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
            +L         L ++F+ +L N++    +    I+   ++   F  F V ++G  I + 
Sbjct: 700 CELP--------LREVFTALLDNSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKK 751

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F  F +   R +    G+GLSI +  +   GG +S+ S
Sbjct: 752 YQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISVES 794


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 8/222 (3%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R +TE+ +  R  DE    FV  VS+ELR+PLT+I G   +L +  L + + +  + +E 
Sbjct: 1110 RDVTERKQIERMKDE----FVSVVSHELRTPLTSIHGSLGMLASGLLSADSEQGKRLLEI 1165

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
             + S+  L+ L+NDILD+  +++G +K+   +  L+DL+      +    ++  +++ V 
Sbjct: 1166 ATDSTERLVRLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQPLANKAGVKLSVS 1225

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            S         D  R++Q  + +LSNA+ FS+   TV L A     + + +VK+NG  IP 
Sbjct: 1226 SPSI--QLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQHYGDELLLTVKDNGRGIPA 1283

Query: 733  DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            D   S+F RF  V ++      G GLGL+I +S I  HGG +
Sbjct: 1284 DKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRI 1325


>gi|297616558|ref|YP_003701717.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144395|gb|ADI01152.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 592

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 152/349 (43%), Gaps = 27/349 (7%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV   G  G I   NPA R L    E  ++   H+       +R Y  +D  D    +  
Sbjct: 262 GVIFIGQGGDILYINPAARRLLDVGEKDVTGKHHVE-----VTRSYALADSVDF---VFQ 313

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                +K     L  L    +E +I+P+     +   + V + +            L++ 
Sbjct: 314 EGQPLKKEF--VLHNLGGKAVETNIVPVKQEAGLQGVLVVLNDI----------SELKRL 361

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + I+  FV +VS+ELR+PL  I GF + L      S N    Q+   I   +  +  +VN
Sbjct: 362 ETIRKDFVANVSHELRTPLAAISGFAETLMMEN--SDNPAVQQFARIIYDEAQRMTRMVN 419

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            +L L+ +++   +L+     L   L+ V Q    ++ E  ++++V          ADR 
Sbjct: 420 SLLQLSKLESVGAELDQEEFDLGQCLDTVLQGFEPRLSEKRLKVEVELPENGLVVRADRD 479

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           R++Q+   +L NA  FS    TV ++     G+ +  V + G  IPE+    VF RF  V
Sbjct: 480 RIVQVLMNLLDNATRFSPPDGTVTVRGTLLPGEILVEVIDEGPGIPEEEAARVFERFYRV 539

Query: 744 SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             A  RGQ  GVGLGL+IV+  +  HGG V + S     +     +P K
Sbjct: 540 DKARTRGQ--GVGLGLAIVKHIVEAHGGRVGVRSVPGNGSVFYFSLPGK 586


>gi|329924932|ref|ZP_08279879.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328940316|gb|EGG36645.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 1003

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 133/261 (50%), Gaps = 17/261 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F ++TD    E+ +    E   +AD+ K  F+  +S+ELR+P+  IIG  +LL T++
Sbjct: 741 VMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTE 796

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+  Q  Y+  +  SS  LL+++N+ILD + ++ G M LN+  I L  LL  V    
Sbjct: 797 ---LDEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLF 853

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
           + K  +  + +  I+   +    + D  RL Q+   ++SNA+ F+ +GS T+ ++  R  
Sbjct: 854 SAKAKQKGLSLSFINSANVPDVIIGDALRLRQVLVNLISNAIKFTHEGSITMSVEGLRRT 913

Query: 717 G----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769
           G       F VK+ G  I  ++   +F  F S  H    R   G GLGL+I +  + L G
Sbjct: 914 GTQEFTLAFQVKDTGIGIAPELQHQLFTSF-SQLHPSLNRKYGGTGLGLAISKKLVELMG 972

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + + S +   ++    IP+
Sbjct: 973 GVIGVESRENAGSSFYFTIPT 993


>gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 752

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 10/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E   +AD  K++F+  +S+ELR+PL  IIG ++LL +S    L+ +  +Y   I 
Sbjct: 350 LKEAKEEAERADRAKSAFLATMSHELRTPLNGIIGMSELLMSS---GLSGELVEYARTIQ 406

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +   LL L+NDILD++ +++G +K+      L  +L  V +++  +    ++R  + ++
Sbjct: 407 TAGENLLALINDILDVSQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKSLRFVLEVA 466

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729
                  V+D  RL Q+   ++ NA+ F+S+G  V+     +A       +F V++ G  
Sbjct: 467 SEVPAVVVSDEARLSQVLFNLVGNAIKFTSRGEVVLRVWMEEAEEGRAKIVFQVRDTGIG 526

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    VF RF        RR  G GLGLSI    + L GG + + S +   +    R
Sbjct: 527 IPREELPRVFERFHQVDQGVTRRFQGSGLGLSIARDLVELMGGRIEVESEEGKGSCFTVR 586

Query: 788 IP 789
           IP
Sbjct: 587 IP 588


>gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 642

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 11/238 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++   D    +R + EK EA  K ++ K+ F+  +S+E+R+P+  +IG TDL+  ++   
Sbjct: 239 YIIAKDMTEQKRLIIEK-EAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE--- 294

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q +YV+ I  S T LLN++NDILD + +++G  +L   T  L   L+E    I  K
Sbjct: 295 LDEEQQEYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPK 354

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD--NG 717
             + NI +   ++         D  +L Q+   +LSNA+ F+  G+  I ++  RD  N 
Sbjct: 355 ALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCVRDQANS 414

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           + I FSV + G  +P +    +F  F    H   R+  G GLGL+I +  + L GG +
Sbjct: 415 ELIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDI 472


>gi|294665317|ref|ZP_06730609.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604910|gb|EFF48269.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 290

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 43  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 102

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +V+D+LDLA ++AG + ++     L DL   ++          +  +     
Sbjct: 103 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDVGSTTLIFEDP 162

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP ++
Sbjct: 163 PVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAEL 222

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 223 HEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 266


>gi|158334667|ref|YP_001515839.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158304908|gb|ABW26525.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 929

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 29/257 (11%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK EA  +A   K++F+ ++S+ELR+PL  I+GF+ LL   K  +L  KQ Q +  I+ S
Sbjct: 412 EKAEAANRA---KSAFLANMSHELRTPLNAILGFSQLLNRDK--NLTPKQKQTLTSINRS 466

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            + LLNL+ND+L+++ ++AG + LN+    L  LL+ +++    K+    +++ V     
Sbjct: 467 GSHLLNLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKGLKLLVDKALD 526

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFI---- 720
           L  ++  D  RL Q+   +L+NA+ F+ +GS  +           L    D+G+ +    
Sbjct: 527 LPPYIRTDESRLRQVLINVLTNALKFTEQGSVALKVYTQPLRSPNLVPTHDDGNAVTEEH 586

Query: 721 -------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                    V++ G  I      ++F  F  ++A R    G GLGL+I +  I L GG++
Sbjct: 587 QPNIYLCIDVEDTGVGISASEMGNLFETFTQASAGRNSTEGAGLGLAICQHCIELMGGNI 646

Query: 773 SISSSDEGVTTINCRIP 789
            I S +   TT+  ++P
Sbjct: 647 LIDSKEGQGTTVQIKVP 663


>gi|229918207|ref|YP_002886853.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469636|gb|ACQ71408.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 852

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 130/261 (49%), Gaps = 27/261 (10%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+L F ++T    AER              +K+ F+  +S+ELR+PL++I GFT+L+   
Sbjct: 602 TLLVFRDITSETEAER--------------LKSEFISTISHELRTPLSSIYGFTELMVKK 647

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNE 653
           +L   N KQ++Y+E I + +  L +LVND LD+  +++G    +   +    V+ D+L  
Sbjct: 648 QLP--NEKQAKYLETIHSETERLTHLVNDFLDVQRMESGSQMYDREQLDIEPVVRDMLTF 705

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + S  +  HE  +   +  D +      D Q+  Q+ S +LSNA+ +S +G  + ++ A
Sbjct: 706 YEAS--SLKHEFEL---IADDARPYELFVDCQKFKQLMSNLLSNAVKYSPRGGKITVELA 760

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                    VK+ G  IP D    +F++F  V N+   +  G GLGL I +  +  H G 
Sbjct: 761 HHEQIVSIKVKDEGIGIPSDALDRLFDKFYRVDNSDSREIGGTGLGLPICQEIVRGHNGQ 820

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S     +T    IPS E
Sbjct: 821 IHVESIQHEGSTFIVEIPSYE 841


>gi|166713061|ref|ZP_02244268.1| putative two-component system sensor protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 295

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 48  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 107

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +V+D+LDLA ++AG + ++     L DL   ++  +   + +      +  D
Sbjct: 108 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDTGTTTLIFDD 166

Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP +
Sbjct: 167 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIPAE 226

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 227 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 271


>gi|196228932|ref|ZP_03127798.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196227213|gb|EDY21717.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 958

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 524 SVLEYSIIP--LPNAQTMLTFV--NVTDSVRAERALTEKNEA---LRKADEIKNSFVQHV 576
           SV    ++P  +P    MLT    +     + +RA  E N A   +++ D++K +F  +V
Sbjct: 116 SVTTAVVLPPLIPRVLEMLTAARRSAEHGDKLQRAYAELNFAHARVKQLDQLKTNFFANV 175

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN-LVNDILDLATVDA 635
           S+ELR+PL  I G  + L    L  +  + ++    +   + +LL+  VND+LD++ ++ 
Sbjct: 176 SHELRTPLALIFGPIERL----LAEIRDEGARRELAVVRRNALLLHKYVNDLLDVSKLEV 231

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G M+L+YS + +  +   V     + + E  I + V + G+  + V D  +L ++F  +L
Sbjct: 232 GKMELHYSRLDVATMARTVAGMFESMVSERGIAVAVKATGEAMAEV-DGDKLQRVFMNLL 290

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
           SNA  ++  GSTV L    D+     +V++ G  +P D+ K +F RF       QRR  G
Sbjct: 291 SNAFKYAPDGSTVRLTLTGDDDHLTLTVEDAGPGVPVDLRKEIFERFQQGDRETQRRYGG 350

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSIV+ F+ +H G +    S  G      ++P
Sbjct: 351 TGLGLSIVKEFVEMHRGSIVAGESSLGGALFRVQLP 386



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 25/283 (8%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA----ERALTEKNEAL------------- 562
           LL D   +Y + P   A+      N   + RA    +R L  +++ L             
Sbjct: 524 LLQDGAQDYVMKPFSVAELRARVRNQLQTKRARDVLQRTLDTRSQDLAAMVSELARARSV 583

Query: 563 -RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K+SF+  +S+ELR+PLT  +  T  L  S   S      +++  I  +  +  
Sbjct: 584 AESANSAKDSFLAVLSHELRTPLTPALAATSAL-ISAPPSDPEVLREFLAVIRRNIELEA 642

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGS 679
            LV+D+LD+  ++   +++  +T+ L+ +L +     A  + E  I     ++++G   +
Sbjct: 643 RLVDDLLDVTRINRDKLRIQPTTVDLHSILRDALSMAAPVLREKEIATVADLMAEGP--A 700

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  RL Q+FS +L+NA  F+ +   V L++          VK+ G  I  ++   +F
Sbjct: 701 IHGDAARLAQVFSNLLTNAAKFTPESGQVTLRSEVVGSMVRVMVKDTGIGISGEVLPHIF 760

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
             F        RR  G+GLGLSI +  +  HGG +   S   G
Sbjct: 761 EPFRQGEAAKARRFGGLGLGLSIAKGLVEAHGGTIRAYSDGPG 803


>gi|153808539|ref|ZP_01961207.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
 gi|149128861|gb|EDM20078.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
          Length = 622

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 135/255 (52%), Gaps = 10/255 (3%)

Query: 524 SVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +VL  + +P  N   ML    ++T     ER L +  E   ++D +K++F+ ++S+E+R+
Sbjct: 361 NVLVRNYLPQDNIIEMLCINFDITQLKETERMLIQAKEKAEESDRLKSAFLANMSHEIRT 420

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           PL  I+GF+ +L+ +     N ++  QYV  I  ++  LL L++DILDL+ ++AG     
Sbjct: 421 PLNAIVGFSSMLQEAD----NPEEKLQYVTIIEENNKRLLQLISDILDLSKIEAGTFDFT 476

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +  +    L NE+ Q++  +     + +++  D       +D+ RL Q+ S  + NA+ F
Sbjct: 477 FEKVNAKRLCNELYQAMQMRTSP-QVELRLSPDLPDLQLTSDKSRLYQVLSNFVVNALKF 535

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           +S+GS  I    +   +  FSV++ G  I  +   +VFNRFV         G GLGLSI 
Sbjct: 536 TSEGSITISYQIK-GKEAKFSVEDTGIGIEPEKQTAVFNRFVK--LNNFIPGTGLGLSIC 592

Query: 762 ESFINLHGGHVSISS 776
           +S I   GG + + S
Sbjct: 593 QSIITQLGGKIGVDS 607


>gi|254425959|ref|ZP_05039676.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188382|gb|EDX83347.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1186

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 563  RKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            RKA+E ++N F+  VS+ELR+PLT+I G   L+ +  +G  NSK+ + V     ++  L 
Sbjct: 953  RKANERLQNEFISMVSHELRTPLTSIHGSLKLM-SMMIGDSNSKEKELVAIALKNTDRLG 1011

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             L+ND+LDL  +++G + +      L +L+    Q++A    E N+  K++ +    +  
Sbjct: 1012 RLINDVLDLERIESGRVSMTRQDCNLAELMQHTAQAMAPMALELNV--KLVVEPIDITIS 1069

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
             D  R++Q  + +LSNA+ FS   + VIL A     D +   K++G  IP D  + +F R
Sbjct: 1070 LDPDRIIQTLTNLLSNAIKFSPSRANVILSATEREQDVLLCTKDSGPGIPADKTELIFER 1129

Query: 742  FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            F     R  RR  G GLGL+I +  +  HGG + + S  E
Sbjct: 1130 FQQVDSRESRRLGGTGLGLAICKQIVLQHGGKIWVESELE 1169


>gi|329888454|ref|ZP_08267052.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
 gi|328847010|gb|EGF96572.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
          Length = 536

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 10/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  V AERAL E   A   A+  K+ F+ ++S+E+R+PL  +IG  D L  +    L+
Sbjct: 130 DVTAKVAAERALVEAKAAAETANRAKSDFLANMSHEIRTPLNGVIGVIDALARTP---LS 186

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q++ VE + +SS  L  LV DILD++ +++G M L      LND L      +     
Sbjct: 187 PQQAEMVELVRSSSVTLERLVTDILDVSRIESGRMTLETRPFDLNDALIPAIAPLRGLAE 246

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E  +  ++  ++   G F  D  R+ QI   +LSNA+ F+++G   +     D GD    
Sbjct: 247 EKGLTFRLERAESACGVFNGDVVRVRQILGNLLSNAVKFTAQGQVSVHVDLLDRGDGAVL 306

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V++ G     D    +F RF        RR  G GLGLSI  +   + GG +   S
Sbjct: 307 LTLEVRDTGIGFGADHAAQLFQRFSQADASITRRFGGAGLGLSICHALTEMMGGRIEAES 366

Query: 777 S 777
           +
Sbjct: 367 A 367


>gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response
            regulator [Geobacter bemidjiensis Bem]
 gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response
            regulator, SSF and PAS domain-containing protein
            [Geobacter bemidjiensis Bem]
          Length = 1323

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A++ K++F+  +S+ELR+PL  I+G+  +LK     +L   Q Q +E +      LL+L+
Sbjct: 861  ANQAKSAFLSSMSHELRTPLNAILGYAQILKRQD--NLTDAQRQQLEIVRGCGEHLLSLI 918

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
            ND+LD+  ++A  M+L   +  L+ LL +V      K  E ++  K     +L   V  D
Sbjct: 919  NDVLDMGKIEAQKMELAELSFDLSALLGQVFSIAKVKADEKDLGFKYEELNRLPRAVRGD 978

Query: 684  RQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            +++L QI   +LSNA+ ++ +G  TV ++     G F   + + G+ IP D    +F  F
Sbjct: 979  QRKLKQILLNLLSNAVKYTHRGCVTVRVRYHSSTGVFACEITDTGTGIPRDKLGIIFEPF 1038

Query: 743  VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            V  A  GQ R G GLGLSI    ++L  G V++ S     +T    +P
Sbjct: 1039 VQLADGGQIREGTGLGLSITRRLVSLMHGQVTVESEPGAGSTFRVELP 1086


>gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1637

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 163/720 (22%), Positives = 314/720 (43%), Gaps = 79/720 (10%)

Query: 114  SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
            SFE+++   H I+  +  E++R   Q+ D   E + + + +    +  +  +LR   ++G
Sbjct: 796  SFESFI---HPIQDDQFLERVR---QARDERVELEWEVSCRDSSYLVRALPYLRNSEING 849

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFD-SLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            +     +  +  ++    +  FK + D ++D LV   DQ G I +AN   +K  +  G  
Sbjct: 850  VVIAFVDVDI-LRRAERDVLKFKFMADQNIDALVL-LDQKGKISYAN---RKMCDQLGYS 904

Query: 233  FQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
             ++ +G+    FK E        R+  + A   N  E  S L+  +   + +   L    
Sbjct: 905  NEEILGQLLSRFKSETDPKSFDDRLEKAHAKGGNLFE--SWLQQRDGTEFPVEVALTPVF 962

Query: 288  EAGIAI------DVSKEITVNDQLTHTYEILHNLTVAIAIFD---QNRYLQFHNRSFVEL 338
              G  +      D+S   T   Q+    E + +    I I D   ++  + F N+ F ++
Sbjct: 963  LQGKQLLFASIRDISLRKTHESQMRLLSEAVQSAANGIVITDCSSEDHPITFVNKGFTDM 1022

Query: 339  -----WEI---DLAFLATNPSNDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETH 388
                  EI   +  FL    +++E +  +R A    E +    K +++N    +  ++ +
Sbjct: 1023 TGFSEQEIIGRNCRFLQGEHTDNETVLRIRRALGRGESVRELIKNYRKNGEPFW--NDLY 1080

Query: 389  KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
                H  NG   H +   N          ++T +++   +  T  +     +D  +EG+ 
Sbjct: 1081 ITPVHDENGILTHFVGVQN----------DVTERIEAARQTETNERTIRLLLDSTAEGLF 1130

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAI--- 503
                DG+   SN     L   E      G  +  +A  C    N  E D   +  A+   
Sbjct: 1131 GLDVDGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGNPFEKDSLQILGAVRAG 1190

Query: 504  --ITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSVRAERALTE 557
              I  +D+      G         +EY   P+         ++TFV++   ++ E  L E
Sbjct: 1191 EAINRYDERFCRKDG-----ESFPVEYWCHPIQEDGKIVGAVVTFVDIETRLQVENELRE 1245

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVEYISAS 616
               A   A+E K+ F+ ++S+ELR+PL+ I+GFT +L+     G++     +Y+  I  +
Sbjct: 1246 AKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDPDEGTIQ----EYLSTIQRN 1301

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISD 674
               LL L+ D+LDL+ ++A       S++ L +LL ++ +++   T+ ++N +   V S+
Sbjct: 1302 GDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQDYQNTLHFDV-SE 1360

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGDFIFSVKNNGSSIP 731
                +   D  RL QI   +++NA+ F+ KG   V++++ +  D+   +  V ++G  I 
Sbjct: 1361 PLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFLLLKVIDDGIGIA 1420

Query: 732  EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++  +++F  FV        R  G GLGLSI +   N  GG + +SS++   +    R+P
Sbjct: 1421 DEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSSTEGEGSEFTIRLP 1480


>gi|218260366|ref|ZP_03475722.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224557|gb|EEC97207.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii
           DSM 18315]
          Length = 502

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 135/243 (55%), Gaps = 14/243 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + VRA+R   E       +D +K++F+ ++S+E+R+PL  I+GF+ LL  +       ++
Sbjct: 267 EDVRAKRLAEE-------SDRMKSAFIANMSHEIRTPLNAIVGFSTLLAQA---DTEEEK 316

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+  I +S+  LL L+ DILD++ +++G ++  Y++  LN++    +++ + +  E  
Sbjct: 317 QEYLRIIQSSNEFLLQLIGDILDISKIESGKLEFIYTSFRLNEIFQPQERAFSFRA-EPG 375

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +RI   +DG      +++ RL Q+ +  LSNA+ F+S GS        + G +++ V + 
Sbjct: 376 VRIIFETDGNDYYIESEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTETGIYVY-VTDT 434

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           GS I +    +VF+RFV      Q  G GLGLSI ++ I++  G + + S +   +T   
Sbjct: 435 GSGIAKKHLSTVFDRFVKLDMFKQ--GTGLGLSICKTIISILKGEIGVESEEGKGSTFWF 492

Query: 787 RIP 789
            IP
Sbjct: 493 TIP 495


>gi|323136816|ref|ZP_08071897.1| histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322398133|gb|EFY00654.1| histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 883

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 129/239 (53%), Gaps = 6/239 (2%)

Query: 560 EALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYIS 614
           EA R A E     K+ F+  VS+E+R+PL  IIGF +++   + G + S++  +Y++ + 
Sbjct: 640 EAARVAAEHASAAKSDFLARVSHEIRTPLNAIIGFAEVMMEERFGPIGSERYKEYLKDVH 699

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS T +L+LVND+LDL+ ++AG ++L++  +  N +++E    + T+ ++  + +++   
Sbjct: 700 ASGTHVLSLVNDLLDLSKIEAGKLELSFERVDANAIISECVSIMQTQANQGRVVVRLALA 759

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPED 733
            +L    AD + L QI   +LSNA+ F+  G  VI+  A  + G  +  VK+ G  + +D
Sbjct: 760 QRLPPIRADERSLKQILLNLLSNAVKFNEPGGQVIVSTALTEAGYVVIRVKDTGVGMSDD 819

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             ++    F   A   + RG GLGL + ++ I  +    +I S     T I    P  +
Sbjct: 820 EVETALEPFKQIATSRKVRGTGLGLPLTKALIEANHASFTIKSRKNEGTLIEVAFPPPQ 878


>gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1265

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 130/245 (53%), Gaps = 15/245 (6%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L +  EA   A+  K+ F+ ++S+E+R+PL  ++G   LL+T+ LG+   ++ +YV+   
Sbjct: 876  LMKSKEAAENANRAKSEFLANMSHEIRTPLNGVLGMLQLLETAPLGA---EEKEYVDEAI 932

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +S  L NL++DILDL+ ++AG + +      L D+ + V   +A    + ++ ++   D
Sbjct: 933  TASKRLTNLLSDILDLSRIEAGKLNIRIDEFSLADMFDSVDGLLAATARKKDLELRFFLD 992

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDFIFSVKNN 726
             +L SFV  D  RL QI   ++ NA+ FS +G+  +        K A++    +F V + 
Sbjct: 993  EQLPSFVLGDEVRLRQILFNLVGNAIKFSDQGTISVQAYLLPFAKIAQER--ILFMVSDE 1050

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I +++   +F  F        RR  G GLGLSIV+  + L  G ++I S+    TT+
Sbjct: 1051 GIGISDELLGLIFEPFSQGEGNYTRRFQGAGLGLSIVKRLVGLLEGEIAIESAPGLGTTV 1110

Query: 785  NCRIP 789
               +P
Sbjct: 1111 YLSLP 1115


>gi|325292298|ref|YP_004278162.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
 gi|325060151|gb|ADY63842.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
          Length = 514

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 3/250 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           +VT+     R +  K      A++ K+ F+  VS+ELR+PL  ++GF+D+L     G L 
Sbjct: 218 DVTEMELLRRDVARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYFGRLE 277

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +YV  I  S   LL++VN +LD++ ++AG  +L   +  + + ++  +  +  + 
Sbjct: 278 NDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEAGRYELMMESFPIGETISSCEAMLGLQA 337

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  + +       +G   AD++ + Q+   +  NA+ F+  G  V + AAR+      +
Sbjct: 338 KEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAAREGRMLKLT 397

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  D  + +   F  V N +  +  G GLGLS+V+  + LHGG  +I+S    
Sbjct: 398 VSDTGIGIASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFAITSQPGA 457

Query: 781 VTTINCRIPS 790
            T +   +P+
Sbjct: 458 GTVVTIMLPA 467


>gi|238854408|ref|ZP_04644750.1| two-component system histidine kinase [Lactobacillus jensenii
           269-3]
 gi|282931812|ref|ZP_06337297.1| two-component system histidine kinase [Lactobacillus jensenii
           208-1]
 gi|238833030|gb|EEQ25325.1| two-component system histidine kinase [Lactobacillus jensenii
           269-3]
 gi|281304119|gb|EFA96236.1| two-component system histidine kinase [Lactobacillus jensenii
           208-1]
          Length = 387

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ K+  + +VS+++R+PLT+IIG+  LLK     SL + Q +YV+     +  +  
Sbjct: 148 RQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKAD--NSLTADQLKYVDIAYNKAGQMKA 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ D  T+++   K+N++ + L  +L +V      +  E NI + V ++       A
Sbjct: 206 LANDLFDYTTLNSTKTKVNFAPLHLTSMLEQVAAGFELEAEEKNISLNVNTNPDDLVIDA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++F+ ++SNA+ +    S + L A +   + +   V+NNG +IP+   + +F R
Sbjct: 266 DAEKLVRVFNNLISNALKYGHGASFINLSAKKIKANLVEIRVENNGEAIPKAALQKIFER 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  V  +   +  G GLGL+IV+  I+LH G ++   S+E +T+    +P K
Sbjct: 326 FYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKIT-CESNERITSFIIHLPFK 376


>gi|304321087|ref|YP_003854730.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299989|gb|ADM09588.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 662

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 3/236 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  ++E AL    EA   A + K+ F+   S+ELR+P++ IIGF  +L+      L 
Sbjct: 390 DITERKQSEEALKAAREAAVLASQAKSEFLSRTSHELRTPMSAIIGFAQVLELDH-DDLA 448

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +       I  ++  LL+L+ND+LD+++++AG   L    + L D+L E     A  + 
Sbjct: 449 PRHQTATTQILKAARHLLSLINDLLDVSSIEAGTQALKLEEVSLLDVLEEAYSLAAPIVK 508

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             N+  +   +    +   DR+R +Q+   +L+NA  ++ +G+ V L    D  D + SV
Sbjct: 509 AANLSFQFDQESAQYTVQCDRRRTIQVVLNLLTNAAKYNREGAYVALTVQPDGNDVVVSV 568

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            ++G+ IP++    +F  F       QRR  G GLGL++ +S +   GG +   ++
Sbjct: 569 TDDGAGIPDERIPRLFTPFDRLGQEKQRRTDGSGLGLALSKSLVETMGGRIGFRNA 624


>gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 754

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 141/258 (54%), Gaps = 9/258 (3%)

Query: 544 NVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++T+  RAER L E        NE L+  D++K+ F+ +VS+EL++PLT+I G+++++  
Sbjct: 496 DITERKRAERKLNEYANELAKANEELKSLDKMKDEFLSNVSHELKTPLTSIKGYSNIIYE 555

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             LG LN +Q + +  I  +S  L  LV+ ++ ++   AG ++ ++  + ++ ++++  +
Sbjct: 556 ETLGKLNDEQKKTMNTIVRNSERLRRLVDSLIYMSMSQAGKIEYSFEPVQISKVIDDAIE 615

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               ++++  + +       +     D+ +L  + + +L NA  F+S G  + ++A  ++
Sbjct: 616 DTNFEINKKGLILNKNVSENIPQINGDKAKLTDMLTNLLDNATKFTSSGGEITVEAFEED 675

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 V + G  IPED+   +F RF  + ++ R +  G GLGL I +  ++ H G++ I
Sbjct: 676 EHIHIKVTDTGVGIPEDLIPYLFQRFYQIDSSIRRKYGGTGLGLYICKLIVDAHYGNIWI 735

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   TT++ ++P  E
Sbjct: 736 DSIEGKGTTVHVKLPETE 753


>gi|239905207|ref|YP_002951946.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795071|dbj|BAH74060.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 853

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 14/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  +  ER LT      + A++ K+ F+ ++S+E+R+PL  ++G   LL+ +    L 
Sbjct: 452 DVTARIEMERTLTAARNEAQAANQTKSEFLANMSHEIRTPLNGVLGMLQLLRDT---PLT 508

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q +Y +    SS  L  L+ DILDL+ V+AG M +   +  L   + E  +       
Sbjct: 509 AEQGEYADLAIQSSRRLTRLLADILDLSRVEAGKMAILCESFELARAVTEAVELFRPSAR 568

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGD- 718
           +  + ++V  D  L + VA D  R  Q+ + ++ NA+ F++KGS  +       R  G+ 
Sbjct: 569 QAGVELRVYVDAALPARVAGDAARFQQVLANLVGNALKFTAKGSVAVEAYPLPPRREGET 628

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774
             +FSV + G  I +     +F  FV  + RG  R   G GLGLSI +S + L GG++++
Sbjct: 629 RALFSVADTGCGIADADLTRLFEPFVQGS-RGYSRNAQGAGLGLSICKSLVELMGGNIAV 687

Query: 775 SSS-DEGVTTINC 786
            S    G T   C
Sbjct: 688 DSEVGRGTTIFFC 700


>gi|149173448|ref|ZP_01852078.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148847630|gb|EDL61963.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 575

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 15/249 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N  L + +++K+ F+  +S+ELR+PL +I+GF+DLL  SK   LN KQ +YV  I 
Sbjct: 284 LAQVNLRLYEMNKLKDEFLATMSHELRTPLNSILGFSDLLANSK--DLNEKQKRYVSNIQ 341

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL  +ND+LDLA +++G M+L  S I + DL+     ++     + NI +    D
Sbjct: 342 MSGKNLLAQINDVLDLAKIESGKMELQLSEITVADLIERRVGNMLPLADKKNIELTSEID 401

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI 730
            K+     D  ++ QI + +LSNA+ F+ +G  V + AAR  G+        V++ G  I
Sbjct: 402 PKIPILFQDSIKIQQILNNLLSNAIKFTPEGGRVHV-AARLCGENPKLMDLIVEDTGIGI 460

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--------GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           P D  + +F +F       + R        G GLGLSI+     L  G V + S     +
Sbjct: 461 PLDEQEHIFEKFRQGKSSSESRDTMSRSYEGTGLGLSIIRELSKLLDGEVFLESEFGRGS 520

Query: 783 TINCRIPSK 791
               R+P +
Sbjct: 521 KFTARLPVR 529


>gi|237720764|ref|ZP_04551245.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229449599|gb|EEO55390.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 810

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 29/268 (10%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +E+L    + Y I PL   +  L                +K E L   D +K++F+ +
Sbjct: 556 GIIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GF+ LL  +      S++ +Y++ +  ++ +LL L++DILDL+ ++A
Sbjct: 598 MSHEIRTPLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEA 654

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSK 693
           G     Y+ + +N+   E+ +S++ K+ +    +++I +          D+ R  Q+ S 
Sbjct: 655 GTFNFVYTNVDVNETCAEIIKSMSMKVSKG---VELIFEEPFPECYIYTDKNRFTQVISN 711

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NA+ F+ +G   +      +    F V++ G  IPE+  KSVF RFV      Q  G
Sbjct: 712 FINNALKFTQQGCITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--G 769

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV 781
            GLGLSI +S ++  GG + + S+ EGV
Sbjct: 770 TGLGLSICKSIVSQMGGEIGVDST-EGV 796


>gi|294664051|ref|ZP_06729455.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606178|gb|EFF49425.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 1092

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 10/260 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L  V++ +    E  L +  +   +A+  K+ F+  VS+E+R+PL   +G  +LL  S 
Sbjct: 483 LLGLVDINEHKANEMLLIQAKQTADEANRAKSIFLAIVSHEIRTPLHGAMGHLELLARSP 542

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           LG    +Q+++V+ I  S   LL+LVND+LD   ++A  +K+N   +  N++     +S 
Sbjct: 543 LGF---EQAEWVDMIRRSFDALLSLVNDLLDSTKLEANALKINPMPMSPNEVAERCARSF 599

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
              + +N++    ++D  L   V  D QRL QI   +L NA+ F+ +GS +I  +  +  
Sbjct: 600 GASILQNDVAFYCMTDPDLDGVVEGDDQRLAQILQNLLGNAVKFTERGSIMISSRCLKQQ 659

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           GD I   F V + G  IP  M  ++F           RR  G GLGL +  +   L GG 
Sbjct: 660 GDTIWARFEVADTGIGIPASMQSAIFKPLAQADDSISRRFGGTGLGLFLCRNLSRLMGGR 719

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +S+SS     +     +P K
Sbjct: 720 ISVSSEPGKGSVFRVDLPFK 739


>gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 933

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 130/234 (55%), Gaps = 18/234 (7%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST-ILL 621
           R+ + +K+ FV  VS+ELR+PLT+I G  DLL  SK+    S+ +Q +  I+A++T  L+
Sbjct: 424 REVERLKDEFVSVVSHELRTPLTSISGALDLL-ASKVVPAGSEDAQRMLNIAANNTDRLV 482

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILD+  +++G +++        DL+ +  + +     +  I++ +     L + +
Sbjct: 483 RLINDILDIERIESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQLAM---SPLSAHL 539

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------ARDNGDFIFSVKNNGSSIP 731
            AD  R++Q+F+ ++SNA+ FS  G+TV + A            N   +F VK+ G  IP
Sbjct: 540 WADPDRIIQVFTNLISNAIKFSPAGATVWVTAKIPEKSELEKFPNPVILFEVKDQGRGIP 599

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            D  +S+F RF  V  +   Q+ G GLGL+I  S +  HGG +   S+  EG T
Sbjct: 600 ADKLESIFERFGQVDASDSRQKGGTGLGLAICRSILQHHGGRIWAESTLGEGST 653


>gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1095

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 132/248 (53%), Gaps = 11/248 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ D   AE+ L +  E   +A++ K++F+ ++S+E+R+PL  IIG   LLK     +L
Sbjct: 377 LNINDKKVAEQELIKAKENAERANQAKSTFLANMSHEIRTPLNGIIGIAQLLKNE---NL 433

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                +YV++++ +S  LL+L+NDI D + +++G MK+      L D +NEV + +  + 
Sbjct: 434 PKHVVEYVKHLNMASHHLLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYRA 493

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717
            E NI + V  D  + S  + D  R+ QI + +L NA+ F+  G       I  +   + 
Sbjct: 494 KEKNIELTVFVDPLIPSKIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIKNSTEKSV 553

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-I 774
           D +F +K+ G  I  D  + +F  F        ++  G GLGL+IV+  I+   G ++ I
Sbjct: 554 DILFVIKDTGIGISGDKKQKLFTPFFQGDQSVTKKYGGTGLGLTIVKRLIDAMNGDINFI 613

Query: 775 SSSDEGVT 782
           S   +G T
Sbjct: 614 SEPGKGTT 621


>gi|294495506|ref|YP_003541999.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666505|gb|ADE36354.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 962

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 162/361 (44%), Gaps = 21/361 (5%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I+ + +GV++   D  I   N A    W  +   L            C   Y++ D    
Sbjct: 608 IESIKDGVSILDADMNIVRVNDAMNK-WYEKNTPLE--------GKKCYEAYHDRDSPCT 658

Query: 500 FAAIITSFDD---ERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFV-NVTDSVR 550
              +I   +    ER  +QG L        E    PL ++ T      + FV ++TD  R
Sbjct: 659 PCPVIRCMETGETERNIVQG-LPDPEPQWFELLAYPLKDSTTGEITGTVEFVKDITDHKR 717

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE  L E     R+  +  +    ++ +ELR+ L NIIGFT +L  +  G LN KQ +++
Sbjct: 718 AEAELAEARLHGREVSKTNSELKANLGHELRTSLGNIIGFTQMLHNNIYGRLNPKQQKHI 777

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S+  L+NL++DIL+++ V+AG M+LN     + +LLNE+   +     + N+ I 
Sbjct: 778 QGIQKSAEHLMNLIDDILEISDVEAGKMELNIEMFSIIELLNEILIFLKPFAEDRNVEIT 837

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 +     D+ ++ Q    ++ NA+ F+ +G  V +     + D  F V ++G  I
Sbjct: 838 TDIPEYIPEINVDKAKIKQAIYNLIINAIHFTPEGRNVHISMEYSSYDLKFEVNDSGIGI 897

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                + +F  F  + +    +     LGLS+ + +I LHGG + + S      +    I
Sbjct: 898 SPTQLEELFRPFKEIYSESGVKPPDSNLGLSLAKEYIELHGGEIEVESESGAGNSFVFTI 957

Query: 789 P 789
           P
Sbjct: 958 P 958


>gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 1079

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 10/219 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+  +S+E+R+P+  IIG T+L   S +  +   Q +Y+E + +S+  LL L+
Sbjct: 403 ANRAKRDFLAVMSHEIRTPMNGIIGMTELALNSGVTPI---QQEYLEMVRSSAETLLELL 459

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           NDILD + ++AG ++L +    L DLL +  Q++  + H + + + + I      +   D
Sbjct: 460 NDILDFSKIEAGRLELEHIDFDLRDLLGDTMQALGVRAHAHGLELALQIRPDVPDALTGD 519

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
             RL Q+   ++ NA+ F+ +G   +L     +GD      F V++ G  IP +    +F
Sbjct: 520 PHRLRQVVVNLVGNALKFTERGEVTVLVENDPSGDEKVRLRFVVRDTGIGIPPEAQARIF 579

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           N F        RR  G GLGL+I    + + GG +++ S
Sbjct: 580 NAFSQADSSTTRRFGGSGLGLAITSQLVGMMGGQINVES 618


>gi|117924517|ref|YP_865134.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608273|gb|ABK43728.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 803

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  K EA  +A++ K+ F+ ++S+E+R+P+  I+G  ++L  +   +L  KQ +Y+    
Sbjct: 294 LAAKTEA-EQANQAKSRFLANMSHEIRTPMNTILGMGEILLNAP--NLTPKQHRYLSISQ 350

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L+NDILDL+ ++AG + L ++   L+D L  +   +     +  + ++ + D
Sbjct: 351 RAGDTLLGLINDILDLSKIEAGELHLEHTLFALHDELKSLITMLRPMARDKGLSMQCVID 410

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            +L + V  D QR  QI   +LSNA+ F+ +GS  +     + G   F+V + G  +PE 
Sbjct: 411 PQLPTHVHGDPQRFRQIVLNLLSNALKFTDQGSITLHAKPIETGRLQFTVSDTGIGMPEQ 470

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +   +F  FV       RR  G GLGLSI    + +  G +  +S
Sbjct: 471 VITKIFRPFVQAEANTTRRFGGTGLGLSICRQLVTMMHGEIYANS 515


>gi|160884048|ref|ZP_02065051.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483]
 gi|156110390|gb|EDO12135.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483]
          Length = 400

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 145/272 (53%), Gaps = 21/272 (7%)

Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568
           +L+ D VL   E  I PL     +    +++    AE+   ++ + L+ A       D +
Sbjct: 123 DLMLDGVLHHYENRIFPLDKEYLLCMCRDISQQWEAEQTNAQQQKELKAARIKVEESDRL 182

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ L+  +       +++QY E I  +S +LLNL NDIL
Sbjct: 183 KSAFLANMSHEIRTPLNAIVGFSKLITYATSAE---EKNQYSEIIERNSEMLLNLFNDIL 239

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687
           DLA+++A  +K N   I L D+  +++Q    K  +N +++ ++ D     + + D  R+
Sbjct: 240 DLASLEADSLKFNIRPIKLIDICLQLEQQFCHKT-QNGVKL-ILDDVNTDMYTSGDWNRI 297

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
           +QI S +LSNA  F+ KG   I    R+  DF+ F VK++G  IP     ++F RF    
Sbjct: 298 IQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVN 355

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              Q  G GLGL++    +   GG + + S +
Sbjct: 356 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 385


>gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea sp. MED297]
 gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297]
          Length = 767

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 133/246 (54%), Gaps = 11/246 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E+ +  +   E ++ F+  +S+E+R+PL  ++G  DLL  ++L   + +Q +Y+E 
Sbjct: 383 RVLREERQKQQLKAEAQSYFLAQISHEIRTPLNGVLGTVDLLDQTQL---DEEQKKYIET 439

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LLNLVND+LD + ++AG M +    I + DL     +    + ++ ++  K+ 
Sbjct: 440 IQSSGKSLLNLVNDVLDYSRIEAGKMTVVEEQIHIQDLFRHQVELFRAQANQKSLNFKLT 499

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFS--VKNNGS 728
            D  +  ++ +D QR+ QI + ++SNA+ F+ +G  V+ L + R NG    S  V++ G 
Sbjct: 500 IDPNVPEWILSDAQRIRQIATNLISNAIKFTDQGQVVVSLSSTRRNGHPYLSIQVRDTGI 559

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            I       +F+ +      G+RR   G GLGL+I +  ++L GG +++ S     +   
Sbjct: 560 GIASHEIAHLFDAY-QQVDVGKRRVYGGTGLGLAISQQLVDLLGGTITVQSQQNQGSEFT 618

Query: 786 CRIPSK 791
            ++P K
Sbjct: 619 VQLPLK 624


>gi|27378849|ref|NP_770378.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351998|dbj|BAC49003.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 546

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 11/234 (4%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G+       
Sbjct: 258 EQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPV 315

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y EY   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ +    +  +    
Sbjct: 316 YKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVGIVADCHHLMKLRASSR 375

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724
            I I  + +  +    AD + + Q+   +LSN++ F+ +G  + LKA    +G    SV+
Sbjct: 376 GITIHEVFEQAMPRLWADERAIRQVVLNLLSNSIKFTPQGGEIWLKAGWTASGGQYLSVR 435

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + GS IPED    V   F   SN+ +   +G GLGL I ++ I+LHGG  ++ S
Sbjct: 436 DTGSGIPEDEIPVVLASFGQGSNSIKSAEQGAGLGLPIAKNLIDLHGGTFTLKS 489


>gi|325292003|ref|YP_004277867.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325059856|gb|ADY63547.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 1248

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 9/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF D++ T + G + 
Sbjct: 991  DITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADMMATERFGPIG 1050

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +YVEY   I  S   +L++VND+LD++ ++AG M +++  + LN+ + E    +  
Sbjct: 1051 --HPRYVEYSNDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEAVSLVQP 1108

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  A + NG  
Sbjct: 1109 QANNQRVIIRTALSQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAYEANGSV 1168

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISS 776
               +++ G  +     +     F   A  G+R    G GLGL + ++ ++ +  + SI+S
Sbjct: 1169 ALRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRANFSITS 1228

Query: 777  SDEGVTTINCRIPSK 791
            +    T +    PS+
Sbjct: 1229 TPNEGTLVEITFPSQ 1243


>gi|294627017|ref|ZP_06705607.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598679|gb|EFF42826.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 290

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 43  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 102

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +V+D+LDLA ++AG + ++     L DL   ++          +  +     
Sbjct: 103 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDVGSTTLIFEDP 162

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP ++
Sbjct: 163 PVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAEL 222

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 223 HEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 266


>gi|150008613|ref|YP_001303356.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937037|gb|ABR43734.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 768

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 137/244 (56%), Gaps = 6/244 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+GF++LL TS +   
Sbjct: 518 LNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELL-TSDMEIS 576

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ ++++ IS +S +LL L+NDILDL+ + +G M    +   LN+LL+ + ++    M
Sbjct: 577 PNERDEFMQVISKNSDLLLKLINDILDLSRIKSGKMSFTLTNCDLNELLSHIYRTHQLLM 636

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
            +  + +K+          AD  RL Q+ + +++NA  F+++G  +I      +  +I  
Sbjct: 637 PQG-VALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQI 695

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780
           SV + G  IP D    VF RF  N      +G GLGL+I +  I   GG++++ S + EG
Sbjct: 696 SVTDTGKGIPADKQAQVFERF--NKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEG 753

Query: 781 VTTI 784
            T I
Sbjct: 754 STFI 757


>gi|86158093|ref|YP_464878.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774604|gb|ABC81441.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 730

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 112/220 (50%), Gaps = 4/220 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL  AD  K++F+ +VS+ELR+PL  ++G+ DLL   KLG L  +Q   ++ +++S   L
Sbjct: 484 ALEAADRRKDNFLANVSHELRTPLVTVLGYADLLLAEKLGPLAPRQRTALQVVASSGRRL 543

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              + ++L+L+  +        +   L D++ +    +A +  E  +R++        + 
Sbjct: 544 RAFIEELLELSRHELARPAEPLAPFPLVDVITQAVVGLAPRFAERGLRVRARVARGTPAA 603

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +  R+R+LQ+   +L NA  ++ +GS + L AA        SV + G  IPE+    +F 
Sbjct: 604 LGQRERVLQVLVNLLGNAERYAPEGSAIHLAAAAIGDRVAVSVTDRGPGIPEEHQALIFE 663

Query: 741 RFVS----NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R        A R +   +G+GL+I +  +  HGG + + S
Sbjct: 664 RLYQVRDDRAPRREGGALGIGLAIAKGIVEAHGGEIRVRS 703


>gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium]
          Length = 1248

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 138/276 (50%), Gaps = 23/276 (8%)

Query: 533 LPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           LP+ Q+ +  +  +VTD       L    +    A + K+ F+ ++S+E+R+P+  I+G 
Sbjct: 641 LPDGQSRIYGLVSDVTDEHGQALELQRARDLAEAASQAKSQFMANMSHEIRTPMNGILGM 700

Query: 591 TDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           T+LL    LG+ LN KQ ++ + +  S   LL ++NDILD A ++AG ++L     VL  
Sbjct: 701 TELL----LGTPLNDKQRRFAQAVYRSGESLLEIINDILDFAKIEAGRLELATCDFVLRT 756

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           L+ +  + +A + HE  + +       L S +  D  RL QI + +++NA+ F+  G  V
Sbjct: 757 LVEDTLELMAPRAHEKGLELSFREQPGLPSVIHGDPLRLRQILTNLVANAIKFTEHGEIV 816

Query: 709 I-------------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
           +                + +  +  F V++ G  IP ++   +F+ FV       RR  G
Sbjct: 817 VDIRRAIGGAVELPKPGSLETMELEFMVRDTGIGIPAEVVPRLFSAFVQANGGMARRYGG 876

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I +  + L GG + ++S+    +    R+P
Sbjct: 877 TGLGLAISKQLVELMGGQIEVNSAPGVGSEFLFRVP 912


>gi|302036587|ref|YP_003796909.1| histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604651|emb|CBK40983.1| Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 589

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 134/260 (51%), Gaps = 26/260 (10%)

Query: 549 VRAERALTEKNEALRK--------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +RAERAL   ++ L++              A+  K+ F+  +S+E+R+P+  IIG  DLL
Sbjct: 38  LRAERALQRVSKELQRRVEELQRAKDAADVANRAKSEFLASMSHEIRTPMNAIIGMADLL 97

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +   +L  +Q +Y+     +   LL+L+NDILDL+ V++G + L+     L++L+++ 
Sbjct: 98  WET---TLTPEQRKYLRIFRRAGASLLSLINDILDLSKVESGRLDLDSIDFDLSELIDKT 154

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--- 710
            + +A + +E  + +   +++      + D  RL QI   +L NA+ F+ KGS V+    
Sbjct: 155 SEMLALRANEKGLELVCHLANDVPCHLIGDPNRLYQILLNLLGNAIKFTEKGSVVMSITN 214

Query: 711 -KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFIN 766
               R  G   FS+ + G  +P D  K++F  F + AH     Q  G GLGLSI +    
Sbjct: 215 DPELRTPGAIRFSISDTGIGVPHDKIKTIFETF-TQAHSTIARQYGGTGLGLSISQQLAA 273

Query: 767 LHGGHVSISSSDEGVTTINC 786
           L GG + + S     +T +C
Sbjct: 274 LMGGRIWVESRLGEGSTFHC 293


>gi|222085322|ref|YP_002543852.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221722770|gb|ACM25926.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 771

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 132/241 (54%), Gaps = 7/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613
           L EK  A   A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L +S+ ++Y + I
Sbjct: 533 LAEKERA-EAANKAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSSRYNEYAKDI 591

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S   LLN++NDILD++ ++AG +KL+   I L  L+ E  +  +      NI + + I
Sbjct: 592 HDSGKHLLNVINDILDMSKIEAGHIKLSCEKIDLAPLIEECLRLTSIPAACKNIHVEQSI 651

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S G      ADR+ + QI   +LSN++ F++ G  + ++  + +   + ++ + G  IP+
Sbjct: 652 SSGI--KLTADRRAMKQILLNLLSNSVKFTNNGGRIAVRTRKVDDAVVLTIADTGIGIPK 709

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +   F  V + +   + G GLGL+I  S   LH G + I S +   T I  RIP 
Sbjct: 710 SALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTLLHHGRMRIRSREGIGTVIAIRIPD 769

Query: 791 K 791
           +
Sbjct: 770 R 770


>gi|75674318|ref|YP_316739.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74419188|gb|ABA03387.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 754

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD   +ERAL E  +   +A + K+ F+   S+E R+PL  IIG + LL  +    L 
Sbjct: 210 DVTDRTDSERALAEARDRANEASQAKSRFLAMTSHEFRTPLNGIIGMSGLLLET---LLT 266

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ YV+ + AS   LL+L+ D+LD + ++AG ++L     VL+DL+ ++ + +A +  
Sbjct: 267 PEQTTYVKAVKASGDALLSLIEDLLDYSRIEAGKVELECRPFVLSDLIEDITELLAPRAQ 326

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIF 721
              + I    D  L +  + D  RL Q+   +  NA+ F SS G  +I+      GD  F
Sbjct: 327 ARQLEIASYVDETLPAEVIGDAARLRQVLLNLAGNAIKFTSSGGVALIVVPGIRPGDIRF 386

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  I  D    +F  F     +  R   G GLGLSI +  +   GG +++ S  +
Sbjct: 387 MVRDTGIGIAPDAQARIFREFEQADDQIIRSYGGSGLGLSISDRIVKRMGGRITLQSKPD 446

Query: 780 GVTTINCRIP 789
             +T    +P
Sbjct: 447 SGSTFEVLVP 456


>gi|153805851|ref|ZP_01958519.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
 gi|149130528|gb|EDM21734.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
          Length = 396

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 148/272 (54%), Gaps = 21/272 (7%)

Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568
           +L+ D +L   E  I PL N   +    ++++   AE+   ++ + L  A       D +
Sbjct: 119 DLMLDGILHHYENRIFPLDNEYLLCMCRDISEQWNAEQTNKKQQKELEAARIKAEESDRL 178

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ L+  ++     +++ QY E I  +S ILLNL NDIL
Sbjct: 179 KSAFLANMSHEIRTPLNAIVGFSKLVIDAEC---TNEKEQYAEIIERNSEILLNLFNDIL 235

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687
           DL++++A  +  N   I L D+  +++Q    K+ +N  ++ ++ D     +V+ D  R+
Sbjct: 236 DLSSLEADSLSFNIRPIKLIDICLQLEQQFCYKV-KNGTKL-ILDDVDTELYVSGDWNRI 293

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
           +QI S +LSNA  F+ KG   I    R+  DF+ F VK++G  IP +   ++F RF    
Sbjct: 294 IQIISNLLSNAAKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAERVATIFQRFGKIN 351

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              Q  G GLGL++    +   GG + + S +
Sbjct: 352 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 381


>gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1187

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 5/229 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + +K E L ++   K  F+ ++S+ELR+PL +I+  +  L  +   +LN  Q +    
Sbjct: 502 QEIQQKAEELEQSTRYKTEFMANMSHELRTPLNSILLLSRYLAENTEQNLNPDQVESASV 561

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LLNL++++LDL+ ++AG M+L Y  + +  +LN++K   A    E  +   + 
Sbjct: 562 ILNSGNGLLNLIDELLDLSKIEAGKMELEYQQVSVEGVLNDIKSLFAPIAKEKKLDFIIK 621

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI-FSVKNNGSS 729
           ++  ++     DR RL QI   +LSNA+ F+SKG  ++ L+     G+ + F+V + G  
Sbjct: 622 NELSEITQLETDRMRLEQILKNLLSNALKFTSKGQVSLTLRQPELTGNLLQFAVTDTGIG 681

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           IP++  + VF+ F       +R+  G GLGLSI      L GG +S+SS
Sbjct: 682 IPQNKQQLVFDAFQQADGSTKRKFGGTGLGLSISRELARLLGGEISLSS 730


>gi|77462061|ref|YP_351565.1| hypothetical protein RSP_1521 [Rhodobacter sphaeroides 2.4.1]
 gi|77386479|gb|ABA77664.1| conserved hypothetical [Rhodobacter sphaeroides 2.4.1]
          Length = 520

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 133/292 (45%), Gaps = 16/292 (5%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L  + L+  +   +        ++W     G+++WAN +Y +          K +   R 
Sbjct: 145 LSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLREA-------AKRLPPDRD 197

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGIAID----VSK 297
           L       R+   +A  +        +E  G ++ + +    +  G    A+     V  
Sbjct: 198 L--SWPLPRLFDRAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E T+ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS    LE
Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            LR    +PE  ++ +W+  I  + K++ +  + +TW LP+GQT  VI   +P G    M
Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALM 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           FE+++ ++    +Y   +++    +D + + +AVF P G + ++N A+ +LW
Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALW 427


>gi|329940075|ref|ZP_08289357.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329300901|gb|EGG44797.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 594

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL + +E   + DE +   V  +++ELR+PLTNI G+ D  +      L    +  +  +
Sbjct: 361 ALNDLSERRERTDEQRRVMVSDIAHELRTPLTNIRGWLDAAQD----GLAEPDADLLASL 416

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              + +L ++V+D+  LA  DAG ++L+   + L +L+ +   +         +   V++
Sbjct: 417 QEEAGLLQHIVDDLQVLAAADAGTLRLHPRVLDLRELVEQTMSAHRATARAGGVETAVLA 476

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            G+L +  AD  RL Q+   +LSNA+  +  G  V L A R  G     V++ G  I E+
Sbjct: 477 PGRL-TVTADPVRLRQVLGNLLSNAIRHTPPGGRVTLGARRVPGAVAIEVRDTGCGIGEE 535

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF+RF        RR  G GLGLSIV   +  HGG V + S     T    R+P
Sbjct: 536 DLPRVFDRFWRAERSRSRRTGGSGLGLSIVRQLVRAHGGDVLVRSRPYEETVFTVRLP 593


>gi|294494881|ref|YP_003541374.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
 gi|292665880|gb|ADE35729.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
          Length = 621

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 133/259 (51%), Gaps = 20/259 (7%)

Query: 545 VTDSVRAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           + DSV A     + N+A  +A  +       K  F+  +S+ELR+PL  IIGF+ LL ++
Sbjct: 360 IADSVGAVIKKEKANKAFLRAKSLEEDVKTTKTEFIATMSHELRTPLNAIIGFSQLLSSN 419

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           + G++N K+ +Y   I      LLNL+NDILD + + +  M+LN  TI L ++ +E+K  
Sbjct: 420 RYGNMNEKELKYSFSILKGGKHLLNLINDILDFSKIHSNKMELNIETINLKEICDEIKTF 479

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I     +  I ++  +   +     D+ + +QI S +LSNA+ F+     V +       
Sbjct: 480 ITPLATKKGITVEYNNKFDI-DINLDKLKFIQIMSNLLSNAVKFTPDKGKVSVDI----- 533

Query: 718 DFI-----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           DF+      SV ++G  IPE     +F+ F+       R+  G GLGL++V+ ++ +HGG
Sbjct: 534 DFVAEYVQVSVTDSGIGIPEHKLNMIFDPFIQADSSNTRKYGGTGLGLALVKEYVEMHGG 593

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S     +T    IP
Sbjct: 594 TIWVESELGKGSTFTFTIP 612


>gi|238062152|ref|ZP_04606861.1| PAS/PAC sensor hybrid histidine kinase [Micromonospora sp. ATCC
           39149]
 gi|237883963|gb|EEP72791.1| PAS/PAC sensor hybrid histidine kinase [Micromonospora sp. ATCC
           39149]
          Length = 453

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 1/235 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR A E K+ F+ +VS+ELR+P+T IIG + LL  S    L ++Q + V  I 
Sbjct: 216 LDEKSAQLRTASESKSRFLANVSHELRAPVTAIIGLSRLLADSASDPLTAEQVRQVGLIR 275

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL LVND+LDLA  ++G ++ N++ + L  +  +++ ++    +   +++ V   
Sbjct: 276 DSAVDLLGLVNDLLDLAKAESGRLEPNWTEVDLRAVFGQLRGTLRALSNRPGVQLVVEDP 335

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              G+  +D   L Q+   +L N + F+ +G  V L+A   +G +  +V + G+ I  ++
Sbjct: 336 PPPGTVRSDEVLLAQVLRNLLHNGLKFTERGE-VRLRAEVRDGRWWLAVSDTGAGIAPEL 394

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F  F       +  G GLGLS      +L GG + ++S     +T    +P
Sbjct: 395 HERIFEEFYQVPGNTRVGGTGLGLSYARRVTHLLGGTLELTSEPGRGSTFTVTLP 449


>gi|167899886|ref|ZP_02487287.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 7894]
          Length = 771

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 218/514 (42%), Gaps = 81/514 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D      R+ +  
Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 182

Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             ++     +  + S   +S E H   W  P +GQ + +   ++P         G + + 
Sbjct: 183 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685
           LD +++  G ++L+   + L  ++N+V  ++      + I + V  +  LG+ +   D +
Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGE 508

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F   
Sbjct: 509 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRA 568

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 569 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|222147978|ref|YP_002548935.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734966|gb|ACM35929.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 599

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613
           L + +  L+ A+E K+ F+  VS+ELR+PL  I+GF+D+L     G + + +  +YV  I
Sbjct: 262 LVKLDADLQTANEAKSRFLAAVSHELRTPLNAILGFSDILMGDYFGRMEDERHREYVRLI 321

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL++VN +LD+  ++AG  +L      L+  +++ +  +A +  E  +++    
Sbjct: 322 RQSGGHLLSVVNTMLDMCRIEAGRYELLVEPFSLSQAIHDCENMLALQAQEKGVKLTSRI 381

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +    AD + + QI   ++ NA+ F+  G  V + AAR   D + SV + G  I +D
Sbjct: 382 GRDVSELTADPRAVRQILINLVGNAIKFTEPGGVVTVDAARFGKDLVISVSDTGIGIAQD 441

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +   FV       R+  GVGLGLS+V+  + LHGG   ++S +   T ++  +P
Sbjct: 442 RILLLGQPFVQVDSDYNRKFDGVGLGLSLVKGLVALHGGTFLLTSREGEGTVVSITLP 499


>gi|89897563|ref|YP_521050.1| hypothetical protein DSY4817 [Desulfitobacterium hafniense Y51]
 gi|89337011|dbj|BAE86606.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 564

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 132/232 (56%), Gaps = 8/232 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E N  LR+ ++ K+ F+  +S+ELR+PLT+II F ++L+ +       K+ +  + I 
Sbjct: 314 LEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVLEKASEDKC-PKEQKITQEIR 372

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A+S +LL ++N+IL++A ++AG  +L    I L D++N V+  I   + + +I+   +  
Sbjct: 373 ANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSIQYSSVLH 432

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPE 732
             +     DR+ L +I   +LSNA+ F+ +G  + +  A D    + + +V++NG  I +
Sbjct: 433 SDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIRK 492

Query: 733 DMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
           +    +F +FV   S+ HR Q  G GLGL++ +    LHGG + + S  D+G
Sbjct: 493 EDQPYIFEKFVQSDSSIHR-QYNGSGLGLALAKELAELHGGWIKVVSELDKG 543


>gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 421

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 127/231 (54%), Gaps = 7/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + +++KN FV  VS+ELR+PLT I G  ++L T  L     +  Q ++   ++S  LL L
Sbjct: 192 EVEQLKNEFVSVVSHELRTPLTAIKGALEILATGILVDEPREAEQMLKIAVSNSERLLRL 251

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVA 682
           VN+IL+L  +D+G M+LN     +N ++ +  +++     +  + I   + D      +A
Sbjct: 252 VNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQKRMEISYSTLDVHNSKILA 311

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D + ++Q+ + +LSN++ FS  G+ V +     + + I +VK+ G  IP D  K++F RF
Sbjct: 312 DEETIIQVLTNLLSNSVKFSHAGTKVEIYTKMGDKEIIIAVKDYGKGIPADKLKTIFERF 371

Query: 743 ----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VS+A   Q  G GLGL+I ++ +  H G + I S+ +  +T    +P
Sbjct: 372 EQVDVSDAR--QNGGTGLGLAICKNIVEKHQGKIWIESTLDSGSTFYFTLP 420


>gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1155

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 133/246 (54%), Gaps = 3/246 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++A++ L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+++Q +
Sbjct: 467 MQAQQELQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSAEQVK 526

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD+A V+AG +++   T  L  L+  ++           + 
Sbjct: 527 FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQLERLVEGLRGMFLPLAEHKGLA 586

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +V  +  +  +   DRQRL QI   +LSNA+ F+  G   +  + +     +F+V+++G
Sbjct: 587 FEVNVEPHVPVTLFTDRQRLEQILKNLLSNAIKFTDHGQVSLTISHQAGTGIVFAVRDSG 646

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  +++F  F        RR  G GLGLSI     +L GG +S+ S+    +  +
Sbjct: 647 IGIAADQQQAIFGAFHQVDGSSNRRYGGTGLGLSISRDLAHLLGGQISVDSNPGQGSVFS 706

Query: 786 CRIPSK 791
             +P +
Sbjct: 707 LTMPER 712


>gi|222084929|ref|YP_002543458.1| two-component sensor histidine kinase protein [Agrobacterium
            radiobacter K84]
 gi|221722377|gb|ACM25533.1| two-component sensor histidine kinase protein [Agrobacterium
            radiobacter K84]
          Length = 1190

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 130/254 (51%), Gaps = 8/254 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + 
Sbjct: 934  DITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 993

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               S+YVEY   I  S   +L++VND+LD++ ++AG M L ++++ LN+ + E    +  
Sbjct: 994  --HSRYVEYATDIGRSGRHVLDIVNDLLDISKIEAGEMDLEFASVGLNEAIAEAVSLVQP 1051

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      + + VAD + + QI   ILSNA+ F+  G  +++  + + NG  
Sbjct: 1052 QANSQRVIIRTALSQAVPNVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEGNGSV 1111

Query: 720  IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +  +++ G  +     +     F  VS   R +  G GLGL + ++ ++ +    +I+SS
Sbjct: 1112 VMRIRDTGVGMTRSELEQAMKPFRQVSTNSRKRGDGTGLGLPLTKAMVDANRATFAINSS 1171

Query: 778  DEGVTTINCRIPSK 791
                T +    PS 
Sbjct: 1172 PNEGTLVEVTFPSP 1185


>gi|301309905|ref|ZP_07215844.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831479|gb|EFK62110.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 508

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 134/231 (58%), Gaps = 13/231 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D +K++F+ ++S+E+R+PL  I+GF+ LL  S       ++ +Y+  I +S+  LL L
Sbjct: 283 ESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAES---DDEEEKKEYLRIIESSNEFLLQL 339

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681
           + DILD++ + +G M+  Y+T+ L+++    +Q+ A ++      +KVI  SDG     V
Sbjct: 340 IGDILDISKIKSGKMEFIYTTLRLSEIFAPQQQAFALRVAPG---VKVIFESDGNDYCIV 396

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +++ RL Q+ +  LSNA+ F+S GS        D+G +++ V + G  I ++   S+FNR
Sbjct: 397 SEKTRLTQVLTNFLSNAVKFTSSGSIRFGYRLTDDGIYVY-VTDTGMGISKESQASIFNR 455

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           FV  N+    ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 456 FVKLNSF---KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 503


>gi|186473035|ref|YP_001860377.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184195367|gb|ACC73331.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1165

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 3/218 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q +Y E I AS++ LL
Sbjct: 481 LEQSSRYKSEFLANMSHELRTPLNSSLILARLLQENRTGNLTDEQVRYAETIHASNSDLL 540

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            L+NDILDL+ V+AG + ++   + +  +L  +++         +++  V  + G     
Sbjct: 541 VLINDILDLSKVEAGQITIDRELVAVESMLQSLREMFEPMAAAKHLQFSVERAPGVPDMI 600

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D QR+ QI   +LSNA+ F+ +G   +  AA D     F V++ G  I  D  + +F 
Sbjct: 601 FTDGQRITQILRNLLSNALKFTERGEVALTVAASDADTLRFDVRDTGIGIAADKLELIFE 660

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F        R   G GLGLSI   F  L GG VS++S
Sbjct: 661 AFQQADGSTSRNYGGSGLGLSISREFARLLGGRVSVAS 698


>gi|327480106|gb|AEA83416.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1135

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 127/253 (50%), Gaps = 4/253 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + +  L +  EA   A+  K+ +V  +S+ELR+PL +I+G+  +L  
Sbjct: 650 QTHLLMQEIEAHRKTDEQLQKAKEASEAANAAKSRYVTGLSHELRTPLNSILGYAQILLR 709

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  ++  +    +  I  S   LL+L++ +LD+A ++AG + L  S I   + L +++Q
Sbjct: 710 DE--AMAPRHKDALGTIHRSGAHLLSLIDGLLDVAKIEAGKLNLEQSEIAFPEFLQQLRQ 767

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            IA +  E  +R    S G++ + V  D +R+ QI   +L NA+ ++  GS + L+A+  
Sbjct: 768 MIAPQAEEKGLRFHFESQGRMPAVVRGDEKRVRQILINLLGNAVRYTDAGS-ITLRASYL 826

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                F + + G  IP +  + +F  F       Q  G+GLGL+I      L GG +S+ 
Sbjct: 827 RETATFEIADTGIGIPAEQIERLFQPFERGNPLRQDNGLGLGLTITRMLTALMGGELSVK 886

Query: 776 SSDEGVTTINCRI 788
           S +   T    R+
Sbjct: 887 SQEGQGTVFQLRL 899


>gi|117926806|ref|YP_867423.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610562|gb|ABK46017.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1271

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 143/259 (55%), Gaps = 15/259 (5%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +L   ++T   +A+ A  +  E   +A+  K+ F+  +S+E+R+P+  ++G +D+L    
Sbjct: 866  LLVANDITVLKQAQEASRQAMEQAERANRAKSEFLATMSHEIRTPMNVVVGMSDIL---- 921

Query: 599  LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            L SL + Q+Q +++ I  + T LL+L+NDILDL+ ++AG ++L ++  V N +L  ++ +
Sbjct: 922  LESLPNPQAQKHIQLIQKAGTTLLDLINDILDLSKIEAGQLELEHA--VFNPIL-LIEDT 978

Query: 658  IATKMHENNIRIKVISDGKLG----SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            IA    +  ++   ++    G    + + DR RL QI   +L NA+ F+ KGS V ++A 
Sbjct: 979  IAIFQMQAKLKGLTLTSSMTGHIPHALMGDRARLRQILVNLLGNAIKFTEKGS-VEVQAG 1037

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
              N  F ++V ++G  I  D    +F++F        RR  G GLGL+I ++ + L GG 
Sbjct: 1038 YANQQFWYAVVDSGVGIGSDSLLRIFDKFTQADSGVARRFGGSGLGLAICKNLMELMGGT 1097

Query: 772  VSISSSDEGVTTINCRIPS 790
            +   S+    +   C IP+
Sbjct: 1098 IETQSTLGQGSRFYCAIPA 1116


>gi|78043472|ref|YP_360244.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995587|gb|ABB14486.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 488

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 1/229 (0%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A  K ++ +  F+ +VS+ELR+PLT I G+T+ L    + +    + ++++ I   +  L
Sbjct: 247 AYNKREQNRREFLANVSHELRTPLTIIQGYTEAL-LDGIVTDEKIREEHLKNILQEAERL 305

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             + N++LDLA+++ G  KL +  I L +   +   +  T+  E  I +++  + + G  
Sbjct: 306 KAMANELLDLASIEEGREKLKFEKIDLANFAQDCFNAFKTQFFEKGIELELEVNVQDGKV 365

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V DR +LL++   +LSNA+ F+  G  V  +      D+   VK++G  IPE   + +F 
Sbjct: 366 VGDRSKLLRVVGNLLSNALKFTPAGGKVKFEVIEGEKDYQIHVKDSGPGIPEQDLEKIFE 425

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF         +G GLGL+I +S +  HGG +   ++ EG       +P
Sbjct: 426 RFYKVDKARSSKGFGLGLAITKSIVEAHGGQIFARNNPEGGAKFTVVLP 474


>gi|154245353|ref|YP_001416311.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159438|gb|ABS66654.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 484

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDI 627
           K+ F+  +S+ELR+PL  I+GF++LL T     L+ ++++ Y   I  S   LL LVNDI
Sbjct: 233 KSHFLAAMSHELRTPLNAILGFSELLATETGAPLDDARKADYARIIHESGQHLLGLVNDI 292

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ V+AG  +L    + +  L+    + +A       + +K +   +L +  ADR+  
Sbjct: 293 LDLSRVEAGAYELEREGVDVAALVAGCAEMVAIDAGRAGVAVKTVFAPRLPAIDADRRAF 352

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746
            QI   +LSNA+ F+ +G  V +    +       V++ G  + PED+ +     F +  
Sbjct: 353 KQIVLNLLSNAVKFTPEGGRVQVSVRSEGEAVAIRVRDTGPGMRPEDVARLGEPFFQAGD 412

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + RG GLG+++V+  + LHGG   + S+    T++   +P
Sbjct: 413 CTQRARGSGLGIAVVKGLVKLHGGDFRVESAPGRGTSVTVTLP 455


>gi|260173264|ref|ZP_05759676.1| two-component sensor histidine kinase [Bacteroides sp. D2]
 gi|315921537|ref|ZP_07917777.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695412|gb|EFS32247.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 406

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 145/272 (53%), Gaps = 21/272 (7%)

Query: 519 ELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEI 568
           +L+ D VL   E  I PL     +    +++    AE+   ++ + L+ A       D +
Sbjct: 129 DLMLDGVLHHYENRIFPLDKEYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRL 188

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ L+  +       +++QY E I  +S +LLNL NDIL
Sbjct: 189 KSAFLANMSHEIRTPLNAIVGFSKLITYATSAE---EKNQYSEIIERNSEMLLNLFNDIL 245

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687
           DLA+++A  +K N   I L D+  +++Q    K  +N +++ ++ D     + + D  R+
Sbjct: 246 DLASLEADSLKFNIRPIKLIDICLQLEQQFCHKT-QNGVKL-ILDDVDADMYTSGDWNRI 303

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
           +QI S +LSNA  F+ KG   I    R+  DF+ F VK++G  IP     ++F RF    
Sbjct: 304 IQIISNLLSNATKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVN 361

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              Q  G GLGL++    +   GG + + S +
Sbjct: 362 DFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQE 391


>gi|224539553|ref|ZP_03680092.1| hypothetical protein BACCELL_04458 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518834|gb|EEF87939.1| hypothetical protein BACCELL_04458 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 288

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 130/243 (53%), Gaps = 11/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVE 611
           + L + NE   +++++KN+F+ ++++E+R+PL  I+GFT++L +T  L     ++  +++
Sbjct: 50  KTLQQLNEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTNVLAETDNLSR--EERMIFLK 107

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +   L+ ++ND+LD + ++A  M+     + +N L+ E+  +       + I+I+ 
Sbjct: 108 EINDNKNFLVQMINDLLDFSKIEANTMEYKDGDVDVNALIQEICAAENAHPRPSGIQIEF 167

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        + DR R  Q+ + ++ NA+ F+ +GS  I      N  F F V + G  I 
Sbjct: 168 VEKLPQCRLMIDRVRFAQVINNLVKNALKFTEQGSVRIGYRRLSNDSFYFYVADTGCGID 227

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG------VTTIN 785
           E+  +++F RFV   +    RG GLGLSI +S +  +GG + + S   G        T  
Sbjct: 228 EESRRAIFERFVKMNY--NIRGTGLGLSITKSIVEHYGGGIGVESKKRGGIYFLLYFTCQ 285

Query: 786 CRI 788
           CR+
Sbjct: 286 CRV 288


>gi|219847925|ref|YP_002462358.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219542184|gb|ACL23922.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 747

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 7/241 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   +AE AL    +    A+  K++F+ +VS+ELR+PL  ++GF  LL      +L 
Sbjct: 258 DITARKQAEVALRIARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLLANDN--NLT 315

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I+ S   LL L+N++LDLA ++AG    N + + +  L+ +V+     +  
Sbjct: 316 PTQQEYLAIINRSGEHLLRLINEVLDLAKIEAGRYTYNAAPLNVRQLIEDVQLLFRNRAE 375

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + + V   G + +  ++D  +L QI   +LSNA+ F+  GS V L   R+    +F+
Sbjct: 376 AKQLHLNVTCAGNVPTLIISDEAKLRQILINLLSNAIKFTDVGS-VHLHVIREEQRLLFT 434

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDE 779
           V++ G  IP    + +F  F      G+     GVGLGLSI      L GG +S+ S   
Sbjct: 435 VEDTGIGIPPLDQQKLFRPFFQGQQTGEYNSSVGVGLGLSISYELARLIGGDLSVYSEGR 494

Query: 780 G 780
           G
Sbjct: 495 G 495


>gi|256391987|ref|YP_003113551.1| histidine kinase [Catenulispora acidiphila DSM 44928]
 gi|256358213|gb|ACU71710.1| histidine kinase [Catenulispora acidiphila DSM 44928]
          Length = 583

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 8/241 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K+  LR+A E K  F  +VS+ELRSPL ++IG + LL  S    L  +Q   V  I+
Sbjct: 209 LEDKSRQLREASETKTRFWANVSHELRSPLNSVIGLSQLLADSTPEELGEQQRHQVGLIA 268

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   L  LV+D+LD+A  +AG +    + + L  LL +++  +        + +     
Sbjct: 269 ASGETLRVLVDDLLDVAKAEAGQLIPQLAPVDLALLLAQIESVVQPSAPSPEVAVLFPDP 328

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSI 730
             L + V D   L ++   ++SN++ F+S G    S   L+     G   F+V++ G  I
Sbjct: 329 AGLPTLVTDEMMLTRVLRNLISNSLKFTSSGHVRLSVRCLE--EPPGTVEFTVEDTGIGI 386

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      VF  F  V  AH+  + G GLGL    S + L GG +S++S     TT+   +
Sbjct: 387 PPQEQTKVFEEFHQVRGAHQRGKAGTGLGLPYARSLVILLGGTISLASEVGHGTTVTVTL 446

Query: 789 P 789
           P
Sbjct: 447 P 447


>gi|126460950|ref|YP_001042064.1| hypothetical protein Rsph17029_0173 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102614|gb|ABN75292.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 520

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 133/292 (45%), Gaps = 16/292 (5%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L  + L+  +   +        ++W     G+++WAN +Y +          K +   R 
Sbjct: 145 LSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLREA-------AKRLPPDRD 197

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGIAID----VSK 297
           L       R+   +A  +        +E  G ++ + +    +  G    A+     V  
Sbjct: 198 L--SWPLPRLFDRAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E T+ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS    LE
Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            LR    +PE  ++ +W+  I  + K++ +  + +TW LP+GQT  VI   +P G    M
Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALM 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           FE+++ ++    +Y   +++    +D + + +AVF P G + ++N A+ +LW
Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALW 427


>gi|153873106|ref|ZP_02001797.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070428|gb|EDN68203.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 743

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 26/254 (10%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+ AL  K + L  A + K+ F+ ++S+ELR+PL +++    LL  +K G+L+ KQ +Y 
Sbjct: 17  AQVALETKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLAENKKGNLSDKQMEYA 76

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRI 669
             I +S   LL L+NDILDL+ V+AG M++N   + L DL+  V+Q    T   ENN+  
Sbjct: 77  RTIHSSGAYLLTLINDILDLSKVEAGKMEVNAEPVSLTDLVTMVEQKFRYTDDEENNLAF 136

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG------------STVILKAARDN 716
           +V    ++   +  D  RL QI + +LSNA  F+ +G             T + +  R++
Sbjct: 137 QVTIAQEVPPIIYTDPLRLQQIINNLLSNAFKFTEQGDIKLMVQRLELPPTPLEEGRRED 196

Query: 717 ----GD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
               GD         SV + G  IP+D  K +F  F        R   G GLGLSI    
Sbjct: 197 WLPLGDGQQRKMITISVSDTGIGIPKDKQKIIFQAFQQADGTTSRSYGGTGLGLSISRQL 256

Query: 765 INLHGGHVSISSSD 778
             L GG + + S +
Sbjct: 257 ARLLGGDLQLYSEE 270


>gi|219670690|ref|YP_002461125.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219540950|gb|ACL22689.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 561

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 132/232 (56%), Gaps = 8/232 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E N  LR+ ++ K+ F+  +S+ELR+PLT+II F ++L+ +       K+ +  + I 
Sbjct: 311 LEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVLEKASEDKC-PKEQKITQEIR 369

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A+S +LL ++N+IL++A ++AG  +L    I L D++N V+  I   + + +I+   +  
Sbjct: 370 ANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSIQYSSVLH 429

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPE 732
             +     DR+ L +I   +LSNA+ F+ +G  + +  A D    + + +V++NG  I +
Sbjct: 430 SDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIRK 489

Query: 733 DMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
           +    +F +FV   S+ HR Q  G GLGL++ +    LHGG + + S  D+G
Sbjct: 490 EDQPYIFEKFVQSDSSIHR-QYNGSGLGLALAKELAELHGGWIKVVSELDKG 540


>gi|254881618|ref|ZP_05254328.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254834411|gb|EET14720.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 616

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 133/229 (58%), Gaps = 13/229 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622
           +++++K++F+ ++S+E+R+PL  I+GF+ ++  ++    N+++  QY + +  ++  L  
Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETE----NAEERLQYYDIVEKNNMRLQE 306

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+N+ILDL+ +++G+M+ NY+ + L  L  +VK + + +       ++++ +    S V 
Sbjct: 307 LINEILDLSKIESGMMEFNYAPVSLYILCEDVKNTYSFRCQPG---VELVFEESDPSLVI 363

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             DR RL Q+FS ++ NA  F++KGS       ++  + +F V + GS I +D    +F+
Sbjct: 364 STDRNRLFQVFSNLIGNATKFTAKGSISFGYKLKEK-EIVFHVADTGSGISDDKIDKIFD 422

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF+      Q +G GLGLSI +  +   GG +++ S  E  TT    +P
Sbjct: 423 RFI--MANNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|189466203|ref|ZP_03014988.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
 gi|189434467|gb|EDV03452.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
          Length = 885

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 136/248 (54%), Gaps = 7/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    +R L    E    +D++K++F+ ++S+E+R+PL  IIGF+ ++  S+     
Sbjct: 487 DITDMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIIGFSRIIAESE---NT 543

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y   + A++  LL L+N+ILDL+ ++AGI++ + + + L  L  E+  +   +  
Sbjct: 544 EERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAPVRLYPLCKEIHDAHVFRCP 603

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            +   I   SD  +    +D+ R+ Q+ S ++ NA  F++ GS +     ++  + IF V
Sbjct: 604 SDVELIFEPSDEDI-RIDSDKNRIFQVISNLIGNAFKFTTHGS-ISYGYHQEGENIIFHV 661

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G+ I  +    VF RFV   +  Q  G GLGL+I ++ I   GG +S++S  E  TT
Sbjct: 662 TDTGTGIAPEKIGKVFERFVKANNFAQ--GTGLGLAICKTIIERLGGTISVTSELEKGTT 719

Query: 784 INCRIPSK 791
               +P+K
Sbjct: 720 FTFNLPAK 727


>gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 909

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 15/269 (5%)

Query: 533 LPNAQTM-LTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           LPN  +  LTFV    ++TD + AE+AL E  E   KA + K+ F+  +S+E+R+PL  I
Sbjct: 487 LPNRTSKDLTFVFVCTDITDRITAEQALIEAREQAVKASQAKSEFLARMSHEIRTPLNAI 546

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG TD+L  S    L  +QSQ V   + +   LL L+NDILD++ ++A  ++L      L
Sbjct: 547 IGITDILAES---DLKPEQSQLVRVCANAGENLLALINDILDISKIEAREVRLEKIAFDL 603

Query: 648 NDLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
                 +   +  K  E +++  +   +   +    + D  RL QI   ++ NA+ F+ +
Sbjct: 604 ESTTTNICDILKQKATEKDLKFSLTVNLPKNRAPLVIGDPTRLRQILFNLIGNAIKFTQE 663

Query: 705 GS-TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
           G   V+L     +  F+ F++++ G+ IP+D    +F  FV       R+  G GLGL+I
Sbjct: 664 GEIAVLLDFDSSSQKFVRFTIRDTGTGIPKDKQHLLFQSFVQADSSITRKFGGSGLGLTI 723

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++ + L GG +   S +   ++    +P
Sbjct: 724 SKNLVELMGGRIWFQSEEGSGSSFYFTVP 752


>gi|170077877|ref|YP_001734515.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885546|gb|ACA99259.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1208

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 10/230 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  EA   A  +K+SF+ ++S+E+R+P+  I+G  +LL+T++L   N +Q  +++ +S
Sbjct: 546 LVEGREAALAASRLKSSFLANMSHEIRTPMNGILGIAELLQTTQL---NPQQQDFIKTLS 602

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++NDILD + ++AG M+L    + + D +  V + +A +     + +    D
Sbjct: 603 QSANHLLYVINDILDFSKLEAGEMRLESVPLQIIDCVESVAELLAIQAQTKQVELITTID 662

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI--FSVKNNGSS 729
            +LG  V  D  RL QI + ++ NA+ F+ +GS VI  L  A D    +  F V + G  
Sbjct: 663 PQLGGTVTGDSMRLRQILTNLVGNAIKFTHRGSVVIRALPMAEDEASVLVKFEVIDTGIG 722

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I +     +F  F  V  +   +  G GLGL+I +  ++L  G + + SS
Sbjct: 723 IDKADQAKLFRSFSQVDPSTTREYGGTGLGLAIAKHLVSLMAGDIGLESS 772


>gi|86160736|ref|YP_467521.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777247|gb|ABC84084.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 461

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 130/243 (53%), Gaps = 14/243 (5%)

Query: 545 VTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           VTDS R    L +KN+ L       ++ D +K++F+  +S+ELR+PLT++IG+++++   
Sbjct: 191 VTDSYRE---LQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEG 247

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G L ++Q +Y+  I      LL L+  ILD++ ++AG ++L  S +    L+ +   +
Sbjct: 248 LGGPLTAEQREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVAT 307

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +     +  +++       L    ADR +L Q    + SNA+ F+  G ++ + A    G
Sbjct: 308 LLPIARKKGLKVSC-DPSPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVNAEVLQG 366

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +     V ++G  IPE+    VF+ F  V  +   +  G GLGL+IV+SF+  HGG + +
Sbjct: 367 ERLAIHVVDSGIGIPEEHLAKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRV 426

Query: 775 SSS 777
            S+
Sbjct: 427 RSA 429


>gi|167746498|ref|ZP_02418625.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662]
 gi|167653458|gb|EDR97587.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662]
          Length = 1315

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 137/249 (55%), Gaps = 14/249 (5%)

Query: 540  LTFVNVTDSVRAERALTEKNE-ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
            L   +VT+ + AER   ++ E AL  A+E    K+ F+  +S+++R+P+  I+G T  L 
Sbjct: 886  LVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGMT-TLA 944

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++ LG  + + + Y++ I  SS  LL+L+NDILD++ ++   + LN S + +  LL+++ 
Sbjct: 945  SAYLGD-DERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPKLLDQLS 1003

Query: 656  QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              I ++  E  + + + ++G     F  D  R+ QI   +LSNA+ F++KG  V L A  
Sbjct: 1004 VMILSQAEEAGLTLSIRAEGVNHEDFYGDPLRINQILINLLSNAVKFTNKGGMVELLAEE 1063

Query: 715  DNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
               +       + F+V++ G  +PE+    +F  F  + +     G GLGLSI +  I+L
Sbjct: 1064 VETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAHIEGTGLGLSITKGLIDL 1123

Query: 768  HGGHVSISS 776
             GG +S+ S
Sbjct: 1124 MGGKISVES 1132


>gi|126444327|ref|YP_001064150.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 668]
 gi|126223818|gb|ABN87323.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 668]
          Length = 771

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 218/514 (42%), Gaps = 81/514 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D      R+ +  
Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 182

Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             ++     +  + S   +S E H   W  P +GQ + +   ++P         G + + 
Sbjct: 183 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685
           LD +++  G ++L+   + L  ++N+V  ++      + I + V  +  LG+ +   D +
Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGE 508

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F   
Sbjct: 509 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRA 568

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 569 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|156742601|ref|YP_001432730.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156233929|gb|ABU58712.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 641

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 17/248 (6%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EA  +A   K++F+ H+S+E+R+PL+ I+G+TDL++        S   + +E I AS
Sbjct: 376 DQAEAAHRA---KSAFLAHMSHEVRTPLSAILGYTDLIRLDLTRRGQSVYQEELEAIHAS 432

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL ++N+ILDL+ +DAG M L      +  L++ V Q+       N   + VI    
Sbjct: 433 AQHLLTMINNILDLSKIDAGRMPLYIELFSIEALVHNVTQTARPLAARNGNSLTVIRAPD 492

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFI-FSVK 724
                +D+ ++ Q+   +LSNA  F+  G+  +           +KA  D  D+I F + 
Sbjct: 493 ADLMTSDKTKIRQVLLNLLSNAAKFTENGAISLRIWRELSLSPAMKAIDDGADWIVFEIA 552

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  +    +F  F  + +A   +  G GLGL+I   F  L GG ++++S+    T
Sbjct: 553 DTGIGIAPEHLPLLFQDFSRIEDADHQRYGGTGLGLAISRQFCRLMGGDITVASAPGKGT 612

Query: 783 TINCRIPS 790
           T   R+P+
Sbjct: 613 TFTVRLPA 620


>gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 616

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 5/237 (2%)

Query: 545 VTDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           V + +R + AL E+ N  L KA  +K+ F+ ++S+ELR+PLT IIGF++ L     G+L 
Sbjct: 213 VEERLRQQSALLEEANTNLAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALG 272

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q + V+++  +   LL L+NDILDLA + AG + L    ++++D   EV   +     
Sbjct: 273 DAQQRAVQHVFDNGQHLLQLINDILDLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQ 332

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIF 721
               +    +     S  AD  R+ QI   +LSNA  F+ +G  + L+   D    +  F
Sbjct: 333 SKKQQFTYTACEAGLSIEADILRVRQILINLLSNASKFTPRGGALGLEIHYDAQRKEVQF 392

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            + ++G  I  +    +F  FV    R  R   G GLGL++V   + LHGG + + S
Sbjct: 393 CIWDHGIGIAANQQNMLFQPFVQLDDRLARDQPGTGLGLALVRQLVTLHGGRIEVES 449


>gi|28898650|ref|NP_798255.1| hypothetical protein VP1876 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364916|ref|ZP_05777487.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030]
 gi|260879684|ref|ZP_05892039.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034]
 gi|260898843|ref|ZP_05907284.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466]
 gi|28806868|dbj|BAC60139.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086698|gb|EFO36393.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466]
 gi|308093405|gb|EFO43100.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034]
 gi|308111679|gb|EFO49219.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030]
          Length = 566

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           E+   LRK    +++    FV  +++ELR+PL  ++G  DLL  ++LG     Q QY+  
Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSADLLSKTQLGE---DQRQYLGN 245

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S  +L  ++ND+LD + ++AG+M++       +DL   +    A K  E  I   + 
Sbjct: 246 LIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSI- 304

Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            D KLG     + D +R+ QI   ++ NA+ F+  G  V+L+    NG   F V++ G  
Sbjct: 305 -DKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGG-VVLRVEWVNGTAFFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422

Query: 788 IPSKE 792
           IP KE
Sbjct: 423 IPLKE 427


>gi|262164440|ref|ZP_06032178.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
 gi|262026820|gb|EEY45487.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
          Length = 1576

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 126/258 (48%), Gaps = 16/258 (6%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            N+TD +  E+ L +      +A + K+ F+ + S+E+R+PL  I+G T LL      SL 
Sbjct: 807  NITDRLAFEQTLKKALRDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDE---SLT 863

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q + V+ I  S   LL +VND+LDL+ ++A  M L    + L + L EV    +T+  
Sbjct: 864  ESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAE 923

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV---------ILKAA 713
              N+  K+     L  +V AD  RL QI + +LSNA+ F+S G            I K A
Sbjct: 924  AKNLDFKLEMGADLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALHAEVIDKFIWKGA 983

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
              N    FS+ + G  I E+  K +F  F        RR  G GLGLSIV   + L  G 
Sbjct: 984  EKN-IVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGK 1042

Query: 772  VSISSSDEGVTTINCRIP 789
            + + SS+   +T    +P
Sbjct: 1043 IGVESSEGQGSTFWTEMP 1060


>gi|225017309|ref|ZP_03706501.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
 gi|224949926|gb|EEG31135.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
          Length = 586

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 6/218 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R+ ++++  FV +VS+EL++PLT+IIGF D LK   +   ++ +  +++ IS  S  L 
Sbjct: 346 IRRLEQMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAMEDADTAR-HFLDIISIESGRLY 404

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ DIL L+++++    +N S + L ++  +V Q +  K  +  +  ++  +  L  F 
Sbjct: 405 RLLQDILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDKQLAFEIRVEDNLPPFA 464

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            +R R+ Q+   I+ NA+ ++  GS VI    +   +    V + G  IP D    VF R
Sbjct: 465 CNRDRISQMLINIIENAVKYTEHGS-VITTIEKRGDNLKICVSDTGIGIPADQLDRVFER 523

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           F     +G+ R   G GLGLSIV+  + L+ G VS+SS
Sbjct: 524 FY-RVDKGRSRSMGGTGLGLSIVKHIVLLYQGSVSVSS 560


>gi|307155247|ref|YP_003890631.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985475|gb|ADN17356.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 762

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 135/254 (53%), Gaps = 18/254 (7%)

Query: 552 ERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGF--TDLLKTSKLGSL 602
           E+ + E  E LR +  +       K+ F+ ++S+EL +PLT +IG   T L  + +  SL
Sbjct: 362 EKRVFECTEELRSSIAVAQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSL 421

Query: 603 NS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +  KQ +Y+E I  +   L++L+NDILD +++ +G  +LN     L  ++N V +  A++
Sbjct: 422 SPEKQRKYIESIQKNGKKLMDLINDILDYSSITSGDYQLNIHEFSLYSVVNSVLRDFASE 481

Query: 662 MHENNIRIKVISDGKL----GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             + +I   +I D ++      F ADR+R+ QI S ++SNA+ F+     V L+  R+  
Sbjct: 482 AQKKSI--DLILDFQVQKEENDFYADRERIKQILSHLISNAIKFTPDQGKVTLRIWREKS 539

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  I ++    +F +F  +  A +    G GLGL++ +  + LH G + + 
Sbjct: 540 QVFFQVEDTGIGISQEQLPLLFEKFQQLEKARQRTHGGTGLGLALTKQLVELHRGTIEVE 599

Query: 776 SSDEGVTTINCRIP 789
           S+ E  +    RIP
Sbjct: 600 STPEQGSLFTVRIP 613


>gi|308270675|emb|CBX27286.1| hypothetical protein N47_I07060 [uncultured Desulfobacterium sp.]
          Length = 701

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 127/234 (54%), Gaps = 3/234 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    AD IK +F+  +S+ELR+PL +IIGFT ++     G LN +Q + +  + +SS  
Sbjct: 464 ERAESADRIKPAFLATMSHELRTPLNSIIGFTGIMLQELAGPLNEEQRKQLTMVQSSSRH 523

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+ND+LD++ ++AG ++L+ ++  L   + ++ + +     +  + ++V     + +
Sbjct: 524 LLSLINDVLDISKIEAGQLELSVTSFELRPSIEKMVKLVLPMAKKKGLDLRVYIADDINT 583

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D++RL Q+   +L+NA+ F+ KG  V +    +N  ++ SV + G+ I  +    +F
Sbjct: 584 AATDQRRLEQVVLNLLNNAVKFTEKG-YVHISCRIENDKYLLSVSDTGTGIRPEELSGLF 642

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             F  +      +  G GLGLSI +  +++ GG + + S     +T   R P K
Sbjct: 643 QPFHQIDTGLTRKYEGTGLGLSICKRLLDMMGGTIDVQSQWGKGSTFIVRFPGK 696


>gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 593

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 132/250 (52%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V  +V   R +TE+    R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S  
Sbjct: 344 HVRGAVAVLRDMTEE----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASTE 398

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +  + I   S  +  LVND+LDLA +++G   L+Y T+ L++ L ++ +  +    
Sbjct: 399 EEKKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAK 458

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  + +           V D  ++ Q+F+ ++ NA+  +  G +V + A          +
Sbjct: 459 EKGVSLTEDIAVSQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQTVKDGLKIDI 518

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K++GS IPE+    +F RF     A    R G GLGL+IV++ +  HGG +++ SS +  
Sbjct: 519 KDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKG 578

Query: 782 TTINCRIPSK 791
           T     IP+K
Sbjct: 579 TAFTFYIPTK 588


>gi|329888197|ref|ZP_08266795.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846753|gb|EGF96315.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 420

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 5/231 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNL 623
           A++ K+ F+ ++S+ELR+PL  I GF++++     G L  ++ + Y   I  S   LL+L
Sbjct: 170 ANQAKSEFLANMSHELRTPLNAINGFSEIMAAEMFGPLGDRRYKGYAADIHGSGQHLLSL 229

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDILD+A ++AG + L+Y  + L+ L  E  + +  K  E  + + +     L    AD
Sbjct: 230 INDILDMAKIEAGKLTLHYEPMALDVLCAEAVRLMRGKAQEAQLALTLDCPEDL-HIEAD 288

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           ++ L Q+   ++SNA+ F+ +G  V +K A RD      SV + G  I     + +   F
Sbjct: 289 QRGLKQVLLNLISNAVKFTPEGGAVSVKVAPRDAATVRVSVVDTGIGIAAKDLERLAQPF 348

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V   H    +G GLGL++ +S I LHGG ++I S     TT+   +P++
Sbjct: 349 EQVEGQHSKSTQGTGLGLALTKSLIELHGGAMTIESEPGRGTTVWFDLPTR 399


>gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 909

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 13/226 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + LR+A+E K+ F+ ++S+E+R+P+  I+G T+LL  ++L     +Q++YV     +   
Sbjct: 380 QELRRANEAKSDFLANMSHEIRTPMNAILGMTELLGETQL---TPEQAEYVRICRGAGDT 436

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           LL L+NDILDL+ V++G M+L  +   L +L+ +  + +A + H+  + +   I  G   
Sbjct: 437 LLYLINDILDLSKVESGRMELQLTQFNLVELVEKTAELMAVRAHKKGLELVCHIFPGVPS 496

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPE 732
             V D  RL QI   ++ NA+ F+ +G  ++L+  RD       G   F+V + G  I  
Sbjct: 497 QVVGDPGRLQQILINLMGNAVKFTERGE-IVLQVERDPDQPGEAGAIRFAVSDTGIGIAA 555

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           D  + +F RF        RR  G GLGL+I    + +  G + + S
Sbjct: 556 DKKEVIFERFSQADSSTTRRYGGTGLGLTISRYLVEMMKGRIWVES 601


>gi|78046879|ref|YP_363054.1| putative two-component system sensor protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325924816|ref|ZP_08186251.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|78035309|emb|CAJ22954.1| putative two-component system sensor protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325544746|gb|EGD16094.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 291

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR+  E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 44  LDQQAEQLREVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +V+D+LDLA ++AG + ++     L DL   ++  +   + +      +  D
Sbjct: 104 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDVGTTTLIFED 162

Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V + G  IP +
Sbjct: 163 PPVLPLLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVHDTGIGIPAE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 267


>gi|322436333|ref|YP_004218545.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321164060|gb|ADW69765.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 797

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 175/396 (44%), Gaps = 45/396 (11%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ QV  E K   L+      ++ + +G+     +GR+ + NPA   +   + + L   
Sbjct: 419 DISEQVQAEGKLRNLIDQSNSILESVGDGIYGLDLEGRVTVVNPAAAQMLGYKPHELLG- 477

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSV---LEYSIIP 532
              RN+         +    D     +    D   +++ + E+    D     +EY   P
Sbjct: 478 ---RNMHEVIHHTRADGSAHDFHDCAVMRAIDALDTMRVSDEVFWRKDGTCFPVEYVARP 534

Query: 533 LPNAQTMLTFVNVTDSVRAERAL---------TEKNEALRKADEIKNSFVQHVSYELRSP 583
              A          D +R  RA+         TE+    R+ D +K+ F+  VS+ELR+P
Sbjct: 535 QIEASE--------DGIRPGRAVGVVVAFADTTER----RQLDRMKDEFISTVSHELRTP 582

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT++     L+    L +   K  Q ++   A++  L+ LVNDILD+  + +G  +L   
Sbjct: 583 LTSLRAALGLVTGGALATRPDKMKQMLQIAIANTDRLVRLVNDILDIERIGSGSSELRPV 642

Query: 644 TIVLNDLLNEVKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                DLL       ATK+H+     +N+R +V S+       AD  R+LQ  S ++SNA
Sbjct: 643 MSAAEDLLER-----ATKIHQGATFKHNVRFRVESNDV--RVWADPDRILQALSNLISNA 695

Query: 699 MDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           + FS     + L A   D  +  F + + G  IP+D  +++F RF  V  +      G G
Sbjct: 696 IKFSPPEGEITLTARYLDEQEAQFDISDQGPGIPQDRLENIFERFQQVDASDTRAMGGTG 755

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL+I  S I  HGG +  SS      T +  +P+K
Sbjct: 756 LGLAICRSIIAQHGGRIWASSPPGKGATFHFTLPTK 791


>gi|186683169|ref|YP_001866365.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465621|gb|ACC81422.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1118

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 16/251 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  +  + L  KN  L + + +K+ F+  +S+EL++PLT ++G + LL   +LG LN
Sbjct: 364 DVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGELN 423

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVK---- 655
            +Q++Y   I  S   L+++VNDILDL  ++ G M L  + +    V +  L+E K    
Sbjct: 424 ERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMDLTLTPVKISAVCDRALSEAKAIHT 483

Query: 656 --QSIATKMHENN----IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                 ++  EN+     +  +  +  L   VAD  RL Q+   +LSNA  F+     + 
Sbjct: 484 QTTKTTSQTQENDRSSAPQFCLSIELGLDEMVADELRLRQMLVHLLSNAFKFTEISGEIG 543

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           L+ +R  G   F++ + G  IPE     +F +F  + N    Q  G GLGL +  +   L
Sbjct: 544 LRVSRWEGWIAFTIWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARL 603

Query: 768 HGGHVSISSSD 778
           HGG VS  S +
Sbjct: 604 HGGDVSFLSRE 614


>gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1340

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 124/234 (52%), Gaps = 12/234 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE AL    EA   A+  K+ F+  +S+E+R+P+  I+G  DLL  + L   N  Q +YV
Sbjct: 696 AETALMSAKEAAEFANRAKSDFLATMSHEIRTPMNAIVGMADLLSETPL---NEDQREYV 752

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +    + + LL+L+ND+LDL+ ++AG + L+     LNDL+    + +A +  E N+ + 
Sbjct: 753 QIFRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFDLNDLVQRAAELVAVRASEKNLELA 812

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVK 724
             I      S V D  RL Q+   +L NA+ F+ +G  V+L+  RD      G  +F+V+
Sbjct: 813 YQIQPDVPTSLVGDPNRLRQVLLNLLGNAIKFTDEGE-VVLRVERDPQADGPGTILFTVR 871

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  IP D   ++F RF  V ++      G GLGL+I    +   GG + + S
Sbjct: 872 DTGIGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGLTISRRLVERMGGKMWVDS 925


>gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 661

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 167/371 (45%), Gaps = 32/371 (8%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +  +  GV      GR+   NP    L  W   +    P   + N+        +E+ G 
Sbjct: 39  LQSIGAGVIATDQQGRVAFLNPVAERLTGWDLVDALNRPVMEVLNLV-------DEASGR 91

Query: 498 DLFAAII-TSFDDERKSLQGTLELLSDSVLEY----SIIPLPNAQTMLTFVNV-TDSVRA 551
            L A +     D E     G L L S     Y    ++ P+ +   ++  V V  D++R 
Sbjct: 92  PLTAPLQRVQEDGEIIDCSGELVLRSRQGKNYPVSCTVAPIASFSGIIGCVFVFRDTIRE 151

Query: 552 ---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              +R L    E   +A + K+ F+  +S+E+R+PLT I+G  DLL  + LG   ++Q Q
Sbjct: 152 REIQRNLLSAKEEAERASQAKSEFLASMSHEIRTPLTTILGMADLLDKTPLG---AEQRQ 208

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV    A+   LL+L+N ILDL+ ++AG +++      L+ LL +  + +A + H+  + 
Sbjct: 209 YVWASRAAGENLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMALRAHQKGLE 268

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFI 720
                  +    V  D  R+ QI   ++ NA+ F+ +G  V ++A R       +N  F 
Sbjct: 269 FTCRLSWQGSCLVLGDATRIRQILVNLIGNAIKFTERGK-VTVEAVRWPAEESAENTWFG 327

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F V + G  IP D  + VF  F        RR  G GLGL+I    + + GG + ++S +
Sbjct: 328 FVVSDTGIGIPPDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMGGTIRLASRE 387

Query: 779 EGVTTINCRIP 789
              +     IP
Sbjct: 388 GEGSRFTVEIP 398


>gi|219849497|ref|YP_002463930.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543756|gb|ACL25494.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 875

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 125/253 (49%), Gaps = 16/253 (6%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LT  NV      ER + ++ E LR A       D  K+ F+  +S+ELR+PL  IIGF+ 
Sbjct: 592 LTIENVQLYNELERQVAQRTEELRAALERAQLADRRKSDFLASISHELRTPLNAIIGFST 651

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L       L   Q + V+ I+ +   LL+L+N++LDLA ++AG + L   ++ L  +  
Sbjct: 652 VLLDDTEQPLTPTQREDVQSINRNGRFLLHLINELLDLARIEAGHLNLELGSVDLCQVTA 711

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STV 708
           EV  ++ T +    + ++      L   VAD  RL QI   +LSNA+ F+ +G    S  
Sbjct: 712 EVCDTVQTLLRNRPVTLRNALPMVLPDVVADSDRLRQILFNLLSNAIKFTERGTITVSAQ 771

Query: 709 ILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763
           +L    ++G        SV + G  IP +  + +F  FV  +  R +  G GLGL+I   
Sbjct: 772 VLDEVNEDGKLCRYVAVSVSDTGIGIPHERQQDIFGEFVQIHGRRSRLGGTGLGLAITRK 831

Query: 764 FINLHGGHVSISS 776
            +   GG + + S
Sbjct: 832 LVEAQGGRIWVDS 844


>gi|260575777|ref|ZP_05843773.1| putative PAS/PAC sensor protein [Rhodobacter sp. SW2]
 gi|259021930|gb|EEW25230.1| putative PAS/PAC sensor protein [Rhodobacter sp. SW2]
          Length = 526

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 164/373 (43%), Gaps = 37/373 (9%)

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE----IKKRMISSSALE 259
            ++W    +GD+ WAN +Y                 S+KL   +       R+   +A+ 
Sbjct: 168 LMIWREAASGDVTWANATYLDQA-------------SQKLEPGQDLSWPLPRLFERTAVA 214

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEA----GIAID--VSKEITVNDQLTHTYEILH 313
           +        L+     ++    +  + GE     G+  D  V  E ++ D +    +   
Sbjct: 215 QGVNGQRQRLDQPTGPAHWYDLIGFAEGEGRLMFGLPADAAVQAETSLRDFMQTLTKTFA 274

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + +AIFD+ R LQ  N + ++L  +   FL+  P+    L+ +R  N +PE  +++ 
Sbjct: 275 HLPIGLAIFDRQRQLQLFNPALLDLSGLQPDFLSLRPTLFAFLDAMRDRNMIPEPKDYRF 334

Query: 374 WKENIFSVYK--SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           W++ +  + K  SS  +++TW LP+GQT  VI   +P G    MFE+++ ++    +Y  
Sbjct: 335 WRKQMTELEKAASSGLYEETWSLPSGQTYRVIGRPHPNGALALMFEDISTEMSRTRRYRA 394

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSR 489
            +++    +D + +G+AVF   G + +SN A+  LW  +     P + +    +A  C+ 
Sbjct: 395 DLELGQAVVDAMDQGLAVFSESGVLVMSNTAYTELWGHD-----PASTLGESGVATLCAH 449

Query: 490 YYNESDG---WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNV 545
           +   S     W      I +   ERK+  G   L    +L+    P+    T+ TF +  
Sbjct: 450 WRENSAPSPIWSEVEDFIATM-GERKAWGGEARLNDGRLLDCRFTPIQGGSTLATFRLAA 508

Query: 546 TDSVRAERALTEK 558
            +  R+ R    K
Sbjct: 509 PEKARSPRLAASK 521


>gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii Ech703]
 gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703]
          Length = 934

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 130/252 (51%), Gaps = 6/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++V+  VR E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    
Sbjct: 422 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK--- 478

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL+   ++ VE +  SS++LL +++DILD + +++  +K+        +++N +  +   
Sbjct: 479 SLSRDANRLVEAMQNSSSLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYLP 538

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +  S + D  RL Q+ S +LSNA+ F+  G  V+    R +G  
Sbjct: 539 LVVKKRLTLYCYIEPSVPVSILGDAVRLQQVLSNLLSNAIKFTDTGCIVLQVQRRHDGYL 598

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I       +F+ F       QR  +G GLGL+I E  ++L  G +SI S 
Sbjct: 599 AFQVRDTGVGIEPRSVMKLFDPFYQAGTGVQRHFQGTGLGLAICEKLVSLMDGDISIESE 658

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 659 PGLGSLFGVRIP 670


>gi|239627656|ref|ZP_04670687.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517802|gb|EEQ57668.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 891

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 140/273 (51%), Gaps = 15/273 (5%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEK--NEAL---RKADEIKNSFVQHVSYELRSPLTN 586
           P       +  V V D+ RAE+A  E+   +AL   + A+  K+ F+  +S+++R+P+  
Sbjct: 339 PFNGDMLAIILVKVLDAQRAEQARQEQLLRDALASAKAANRAKSDFLSRMSHDIRTPMNA 398

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG + + +  KLG   S Q  + + I ASS  LL+L+NDILD++ ++ G M+L+     
Sbjct: 399 IIGMSTIGQL-KLGDDRSVQDCFRK-IDASSRYLLSLINDILDMSKIETGKMELSQEYFD 456

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
             +L+ E+ Q +  +  E  IR ++  +  L   +V D  R+ QI   +LSNA+ F+S  
Sbjct: 457 FAELIGEIDQIVYPQAQEKKIRYEIYHEEPLEQYYVGDSLRVKQILLNLLSNALKFTSAD 516

Query: 706 STV---ILKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
             +   I +  R NG  +I F V+++G  + ++    +F  F   +    R   G GLGL
Sbjct: 517 GLIQINIQEQKRTNGFSYIRFCVRDSGIGMSKEFRSRIFQPFEQESPEAARNNVGSGLGL 576

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SIV + + L GG + + S           IP K
Sbjct: 577 SIVYNLVQLMGGTIEVESEKNKGAAFTVTIPLK 609


>gi|224539516|ref|ZP_03680055.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518864|gb|EEF87969.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 997

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 133/248 (53%), Gaps = 7/248 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T   + E  L    E   +++ +K++F+ ++S+E+R+PL  I+GF+ +L  +       
Sbjct: 613 ITGRKKMEEDLITAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILADA---EEPE 669

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +Y+  I  ++T+LL LV DILDL+ +++G ++  YS I LN L  E+++S   +   
Sbjct: 670 EKEEYINIIENNNTLLLQLVGDILDLSKIESGTLEFVYSDIDLNALFQELEESARLRQKN 729

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723
           + + I+ + +        ++ RL Q+ + +++NAM F+  GS +       N DF+ F +
Sbjct: 730 DAVVIRYLPEMPDCFVNIEKNRLTQVVTNMMNNAMKFTPSGS-ITFGYHLKNTDFLYFYI 788

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I +D   +VF RFV      Q  G GLGLSI +S +   GG + + S     +T
Sbjct: 789 TDTGYGIEKDKKDTVFGRFVKLDSFSQ--GTGLGLSICQSIVENLGGEIGVESEPGKGST 846

Query: 784 INCRIPSK 791
               +P +
Sbjct: 847 FWFTLPYR 854


>gi|163759717|ref|ZP_02166802.1| probable two-component sensor histidine kinase protein [Hoeflea
           phototrophica DFL-43]
 gi|162283314|gb|EDQ33600.1| probable two-component sensor histidine kinase protein [Hoeflea
           phototrophica DFL-43]
          Length = 510

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 11/248 (4%)

Query: 539 MLTFVNVTDSVRAERALTEK--NEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDL 593
           ML F    D + AE  + +   +EA R+A+E    K+ F+  +S+ELR+PL  I+GF+++
Sbjct: 226 MLGFQTEKDDLIAELEVAKSVSDEARRRAEESNLAKSRFLASMSHELRTPLNAILGFSEV 285

Query: 594 LKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +    LG + N    +YV  I  S   LLNL+N+ILDL+ ++AG   LN S + L+D+  
Sbjct: 286 MSGEVLGPVGNESYKEYVGDIHRSGQHLLNLINEILDLSRIEAGRYDLNESALALSDIAQ 345

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +    I  K    +I I    +  L    AD + + Q+   +LSNA+ F+  G  + +K 
Sbjct: 346 DCIGLIQLKARSKSITINEAFEEDLPMVWADEKSIRQVVLNLLSNAVKFTPSGGEIRVKL 405

Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
                 G +I ++K+NG  I E+    V + F   S A +   +G GLGL IV++ +  H
Sbjct: 406 GWTAGGGQYI-AIKDNGPGIAEEEIPVVLSAFGQGSVAIKSAEQGTGLGLPIVQAILAKH 464

Query: 769 GGHVSISS 776
           GG   + S
Sbjct: 465 GGEFVLKS 472


>gi|296447262|ref|ZP_06889191.1| integral membrane sensor signal transduction histidine kinase
           [Methylosinus trichosporium OB3b]
 gi|296255224|gb|EFH02322.1| integral membrane sensor signal transduction histidine kinase
           [Methylosinus trichosporium OB3b]
          Length = 514

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 130/249 (52%), Gaps = 10/249 (4%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQS 607
           E+A    +EA R+A+E    K+ F+  +S+ELR+PL  I+GF+++LK    G    +   
Sbjct: 241 EQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVLKNELFGVHAVAAYK 300

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I +S   LL L+N+ILDL+ V+AG  +L   ++ L  ++ + +  +  +  +  I
Sbjct: 301 DYSNDIHSSGQHLLMLINEILDLSRVEAGRYELKEESVSLATMVEDCRHLLTIRAQKRGI 360

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            +  +++  L    AD + + QI   +L+NA+ F+ +G  V LK       G ++ ++++
Sbjct: 361 EMIEMTEPDLPRLWADERAVRQIVLNLLTNAIKFTPQGGQVTLKVGWTSAGGQYV-AIRD 419

Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            G  IPE+    V + F     A +    G GLGL IV+  I+LHGG   ++S   EG  
Sbjct: 420 TGPGIPEEEIAVVMSSFGRGTLAQKNAEEGTGLGLPIVKGLIDLHGGLFKLASKVREGTE 479

Query: 783 TINCRIPSK 791
            I    P +
Sbjct: 480 AIVVFPPER 488


>gi|170748577|ref|YP_001754837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655099|gb|ACB24154.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 796

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 140/260 (53%), Gaps = 11/260 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T V+VT+   AE A+    +A   A+  K+ F+ ++S+ELR+PL+ +IG++++L      
Sbjct: 247 TCVDVTERKEAEEAVERARQAAEAANRAKSQFIANMSHELRTPLSAVIGYSEMLGEELED 306

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +     +  I A++  LL+L+ND+LD++ ++AG M  +  T  ++DLL +V  S  +
Sbjct: 307 IGQAALLPDLRKIEAAARHLLSLINDVLDISKIEAGRMTASAETFTVSDLLRDVSDSTGS 366

Query: 661 KMHENNIRIKVISDGK-----LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714
            + +   R  V+  G      LGS   D+ ++ Q    ++ NA  F+ +G+ T+ ++  R
Sbjct: 367 LVEKKGNRF-VLDTGAAGTADLGSMHQDQTKIRQCLLNLIGNAAKFTERGTITLTVRRHR 425

Query: 715 DNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           + G D++ F+V + G  + E+    +F RFV       R+  G GLGL+I  +F    GG
Sbjct: 426 EEGADWLSFAVADTGIGLTEEQIGRLFERFVQADDSTTRQFGGTGLGLAITRAFCRTMGG 485

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + ++S+     T   R+P+
Sbjct: 486 DIGVASTPGAGATFTIRLPA 505


>gi|119486187|ref|ZP_01620247.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456678|gb|EAW37807.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1955

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 14/260 (5%)

Query: 529  SIIPLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            ++ P+     M   V VTD     + E  L +  E    A E K +F+ ++S+ELRSPL 
Sbjct: 1453 AVKPIYIGDQMFHLVRVTDISDRKQIELELQKAKEVAEAASEAKGAFIANMSHELRSPLN 1512

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             I+GF+ LLK +   SL+ +++   E I  S   LLNL+N +LDLA ++A  + +  + +
Sbjct: 1513 AILGFSRLLKNNSQISLDERKN--AEIIYRSGEHLLNLINQVLDLAKIEANRITVEPTDL 1570

Query: 646  VLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             L+ L++++      K  E   N  ++  SD    S   D  +L Q+F  +LSNA+ F+ 
Sbjct: 1571 NLDQLIDDIYNMFYLKAQEQGLNFNVQKTSDVPC-SICTDEIKLRQVFINLLSNALKFTK 1629

Query: 704  KGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLG 757
            +G      +V  K + +N    F V++ G  I  +    +F  F  S A +  + G GLG
Sbjct: 1630 RGFITLNISVKSKKSDNNVMLNFEVEDTGVGIAPEEQTDIFEAFNQSQAGKQVKEGTGLG 1689

Query: 758  LSIVESFINLHGGHVSISSS 777
            L+I   FI L GG +S+ S 
Sbjct: 1690 LAISREFIKLMGGEISVESQ 1709


>gi|224539382|ref|ZP_03679921.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519002|gb|EEF88107.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 817

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 138/248 (55%), Gaps = 7/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    +R L    E    +D++K++F+ ++S+E+R+PL  I+GF+ ++  S+     
Sbjct: 416 DITEMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAESE---NT 472

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y   + A++  LL L+N+ILDL+ ++AGI++ + + + L+ L  E+  +   +  
Sbjct: 473 EERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAAVRLHPLCKEIHDAHVFRC- 531

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            +++ ++     +     +D+ R+ Q+ S ++ NA  F++KGS +     R+    +F V
Sbjct: 532 PSDVELRFDPSDEDILIDSDKNRIFQVISNLIGNAFKFTTKGS-ISYGYHREGETIVFHV 590

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G+ I  +    VF RFV   +  Q  G GLGL+I ++ I   GG +S++S  E  TT
Sbjct: 591 TDTGTGIAPEKIGKVFERFVKANNFAQ--GTGLGLAICKTIIERLGGKISVTSELEKGTT 648

Query: 784 INCRIPSK 791
               +P+K
Sbjct: 649 FIFTLPAK 656


>gi|163794992|ref|ZP_02188961.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159179811|gb|EDP64338.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 417

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 25/240 (10%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A+ +K  F+  +S+ELR+PL  IIGF ++L     G+L  KQ +Y   I A+S  LL 
Sbjct: 167 REAERVKADFMARMSHELRTPLNAIIGFGEMLSAGIGGTLVGKQLEYCASIQAASAQLLE 226

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKV-ISDGKLGS 679
            + DILDL  + AG            D L + +Q +A+   E  + +R  V  S+   G 
Sbjct: 227 QITDILDLEHLSAG-----------ADALAQERQDLASVCTEVIDRLRSTVQASEVPAGM 275

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            V ADR+ L  I + ++SNA+ +S KG++V+++A  D    +  V + G  +       +
Sbjct: 276 QVWADRRSLATILNSLISNALKYSPKGTSVVIRAEHDADGTLIRVVDRGYGVGASDLSRI 335

Query: 739 FNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F  F    +R   R      G GLGLS+V   +N HGG +   S     TT+   +P++E
Sbjct: 336 FEPF----YRAHERELPAVGGSGLGLSLVRMLVNAHGGRLDFESRLNEGTTVTVWLPAEE 391


>gi|265751905|ref|ZP_06087698.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263236697|gb|EEZ22167.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 616

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 132/229 (57%), Gaps = 13/229 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622
           +++++K++F+ ++S+E+R+PL  I+GF+ ++  ++    N+++  QY + +  ++  L  
Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETE----NAEERLQYYDIVEKNNMRLQE 306

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+N+ILDL+ +++G+M+ NY+ + L  L  +VK + + +       ++++ +    S V 
Sbjct: 307 LINEILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRCQPG---VELVFEESDPSLVI 363

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             DR RL Q+FS ++ NA  F++KGS +         + +F + + GS I +D    +F+
Sbjct: 364 STDRNRLFQVFSNLIGNATKFTAKGS-ISFGYKLTEKEIVFHIADTGSGISDDKIDKIFD 422

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF+      Q +G GLGLSI +  +   GG +++ S  E  TT    +P
Sbjct: 423 RFI--MANNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|212691341|ref|ZP_03299469.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855]
 gi|237712212|ref|ZP_04542693.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|237726358|ref|ZP_04556839.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|212666094|gb|EEB26666.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855]
 gi|229434884|gb|EEO44961.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|229453533|gb|EEO59254.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 616

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 132/229 (57%), Gaps = 13/229 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622
           +++++K++F+ ++S+E+R+PL  I+GF+ ++  ++    N+++  QY + +  ++  L  
Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETE----NAEERLQYYDIVEKNNMRLQE 306

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+N+ILDL+ +++G+M+ NY+ + L  L  +VK + + +       ++++ +    S V 
Sbjct: 307 LINEILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRCQPG---VELVFEESDPSLVI 363

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             DR RL Q+FS ++ NA  F++KGS +         + +F + + GS I +D    +F+
Sbjct: 364 STDRNRLFQVFSNLIGNATKFTAKGS-ISFGYKLTEKEIVFHIADTGSGISDDKIDKIFD 422

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF+      Q +G GLGLSI +  +   GG +++ S  E  TT    +P
Sbjct: 423 RFI--MANNQVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|150006769|ref|YP_001301512.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935193|gb|ABR41890.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 622

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 10/242 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L  +Q+ Y+ 
Sbjct: 382 EEDLISAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEE--DLELRQN-YIS 438

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I  ++ +LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E   I + 
Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPEGVEITLD 498

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
              D     F  DR RL QI   +L+NA+  + KGS        D G  + F V + G  
Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCG 555

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D   ++F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P
Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLP 613

Query: 790 SK 791
            K
Sbjct: 614 MK 615


>gi|154491989|ref|ZP_02031615.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC
           43184]
 gi|154088230|gb|EDN87275.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC
           43184]
          Length = 794

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  +   ++D +K++F+ ++S+E+R+PL  I+GF++LL    +     ++++Y+ 
Sbjct: 409 EIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLLT---MAEDEEERNEYIN 465

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS+++ +LL L+NDILD+A ++AG ++   S I +N LL++++QS   K  E  ++I  
Sbjct: 466 IISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPE-GVQISF 524

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        ++D+ RL Q+ +  ++NA+ F+ +GS       +D+   +  V++ G  I 
Sbjct: 525 VEKMPYCIIMSDKNRLAQVITNFINNAIKFTKEGSIRFGYRHKDD-KLLLYVRDTGCGIE 583

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +    VFNRFV      Q  G GLGL+I +  +   GG + + S
Sbjct: 584 PEKKDLVFNRFVKLNSFAQ--GTGLGLAICQMIVKKMGGEIGVES 626


>gi|325914837|ref|ZP_08177172.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538928|gb|EGD10589.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 291

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR+  E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 44  LDQQAEQLREVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNTEQLKQVRFVS 103

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS+  L  +V+D+LDLA ++AG + ++     L DL   ++  +   + +      +  D
Sbjct: 104 ASTRELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDVGTTTLIFED 162

Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +L          FSV++ G  I  +
Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVLAQLEGTDHVRFSVQDTGIGIAPE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +  ++F  FV      Q+R  G GLGLSI + F  L GG V I+S
Sbjct: 223 LHDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINS 267


>gi|298207043|ref|YP_003715222.1| sensory box sensor histidine kinase/response regulator
           [Croceibacter atlanticus HTCC2559]
 gi|83849677|gb|EAP87545.1| sensory box sensor histidine kinase/response regulator
           [Croceibacter atlanticus HTCC2559]
          Length = 509

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 136/235 (57%), Gaps = 8/235 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +S+ A++ L  KN+ L + +  KN F+ ++S+E+R+PLT I+GF++LLK +   +LN +Q
Sbjct: 112 ESIIAKQMLVLKNQQLEQQNRFKNKFLANISHEIRTPLTAIVGFSELLKKT---NLNFEQ 168

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ I+ +S  L   +ND+LD+A ++ G +K++   I L +++ ++ +    K     
Sbjct: 169 LGLLDVITNASEQLTATINDMLDIAKIELGELKISNEEINLKEVILDIAKVYKEKAKSKG 228

Query: 667 IRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---F 721
           I   V  D + L + + D+ R+ Q+   +L NA+ F++ G+ ++++K +    + I   F
Sbjct: 229 INFSVEYDEEILSNTIGDKLRIQQVLGNLLENAIKFTNVGNVSLVVKKSFQRANKIGVDF 288

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V++ G  IPED  +SVF  F       +++G GLGL+I ++ +    G + + S
Sbjct: 289 YVEDTGQGIPEDHLRSVFESFHQVNASEKQKGTGLGLAITKTLVEALEGKIQVES 343


>gi|317471314|ref|ZP_07930673.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901207|gb|EFV23162.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 843

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 137/249 (55%), Gaps = 14/249 (5%)

Query: 540 LTFVNVTDSVRAERALTEKNE-ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           L   +VT+ + AER   ++ E AL  A+E    K+ F+  +S+++R+P+  I+G T  L 
Sbjct: 414 LVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGMT-TLA 472

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           ++ LG  + + + Y++ I  SS  LL+L+NDILD++ ++   + LN S + +  LL+++ 
Sbjct: 473 SAYLGD-DERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPKLLDQLS 531

Query: 656 QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             I ++  E  + + + ++G     F  D  R+ QI   +LSNA+ F++KG  V L A  
Sbjct: 532 VMILSQAEEAGLTLSIRAEGVNHEDFYGDPLRINQILINLLSNAVKFTNKGGMVELLAEE 591

Query: 715 DNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
              +       + F+V++ G  +PE+    +F  F  + +     G GLGLSI +  I+L
Sbjct: 592 VETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAHIEGTGLGLSITKGLIDL 651

Query: 768 HGGHVSISS 776
            GG +S+ S
Sbjct: 652 MGGKISVES 660


>gi|189467535|ref|ZP_03016320.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
 gi|189435799|gb|EDV04784.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
          Length = 652

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 187/378 (49%), Gaps = 25/378 (6%)

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           + NP+    +   N+T Q + ET+ + + +   + I  L E + +F  D    L++    
Sbjct: 140 SGNPKSLLCYTV-NVTGQCERETRISRMEERNRKIIQALPEFIFIF--DENFFLTD---- 192

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL-- 520
            L  ++   L P   +R       R     +  DLF   I     D E K ++  L++  
Sbjct: 193 VLMSSDTILLHPVEQLRGADG---RTIYSPEVSDLFLRNIRQCLEDGELKEIEYPLDVDD 249

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                 +  I P  + + M    ++ D V+    L E  +   +AD +K+ F+ ++S+E+
Sbjct: 250 CERHYFQARIAPFEDNKVMALIHDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEI 309

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF++++    L     ++++Y+  I  +S +LL L+NDILDL+ +++G  ++
Sbjct: 310 RTPLNAIVGFSEIIA---LTEDEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEM 366

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N+  + +  L++EV++    KM +  IR+ VI   +    + DR R+ Q+    LSNA+ 
Sbjct: 367 NFQLVEMTGLIDEVEKVHRLKM-KTGIRLNVICPDEEIWIMVDRNRITQVLFNFLSNAIK 425

Query: 701 FSSKGS-TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            + +G+ T+ L+     G+++   V + G  I ++    +FNRF       Q  G GLGL
Sbjct: 426 NTHEGTITLGLEVC---GEWLKVYVTDTGCGIAKEKLPLIFNRFEKLNDFVQ--GTGLGL 480

Query: 759 SIVESFINLHGGHVSISS 776
            I +S +   GG +S+ S
Sbjct: 481 PICQSIVERLGGKISVES 498


>gi|160889895|ref|ZP_02070898.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492]
 gi|270294144|ref|ZP_06200346.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156860887|gb|EDO54318.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492]
 gi|270275611|gb|EFA21471.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 131/239 (54%), Gaps = 5/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVE 611
           + L   NE   +++++KN+F+ ++++E+R+PL  I+GFT +L  +++ +L+ + +  +++
Sbjct: 50  KTLQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTML--AEMDNLDRETRMAFLK 107

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +   LL LVND+LD + ++A  ++ N   + +N L++EV  +   + H   I+++ 
Sbjct: 108 EINDNKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEF 167

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        V DR R  Q+   ++ NA+ F+  GS  I      N +F F V + G  I 
Sbjct: 168 VERLPQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGID 227

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           E    ++F RFV   +    +G GLGLSI +S +  +GG + + S     +T    +P+
Sbjct: 228 EVGRHAIFERFVKMNY--NIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284


>gi|163846054|ref|YP_001634098.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523787|ref|YP_002568257.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667343|gb|ABY33709.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447666|gb|ACM51932.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 878

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD +KN F+  +S+ELR+P+T I GFT LL    LG LN  Q ++V  I +++  ++NL
Sbjct: 629 EADRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQLNDTQREFVNTIYSNTERMINL 688

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+L++  +++G + L + ++ L + L+ V   +  ++ ++  ++ +     L    AD
Sbjct: 689 INDVLEITKIESGSIDLEWRSLHLAEALSGVIAELQPQITQHRHQLTISIPPGLPLIRAD 748

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR---------------DNGDF-IFSVKNNG 727
             RL QI   +L NA+ ++  G ++ + A                 DN  + + S+ + G
Sbjct: 749 AMRLHQILYHVLLNAVKYTPAGGSITIAAREVMNIDIPEPIRSTLSDNRRYLLLSISDTG 808

Query: 728 SSI-PEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I PED+ + +F+RF    N  + +  G GLGLSIV+  + L GG + + S+
Sbjct: 809 VGIRPEDLPR-IFDRFFRGENLLKVEAGGTGLGLSIVKPLVELLGGRIWVEST 860


>gi|256829363|ref|YP_003158091.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578539|gb|ACU89675.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 788

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 11/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  +R E  L    ++   A+E K+ F+ ++S+ELR+P + I+G   LL+ +    L+
Sbjct: 388 DVTAQIRMEEGLIAAKKSAESANEAKSEFLANMSHELRTPFSGIMGMMRLLQGT---GLD 444

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV     +S     L+ D+LD++ ++AG + ++      +DL + V +  A    
Sbjct: 445 DEQRRYVCLAIKASDRFTRLLTDLLDISRIEAGKLDIHEQEFSTSDLHDSVMEIFALASQ 504

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDF 719
           E  I ++   D  + +  V D  R+ QI   ++ NA+ F+ KG     +IL +     D 
Sbjct: 505 EKGISLEFFIDPSVPARLVGDEMRVRQILFNLVGNAIKFTEKGCVCVEIILLSPVKGADL 564

Query: 720 --IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
             +F+V + G  IP DM   +F  FV       R  +G GLGL+IV+  + L GG +   
Sbjct: 565 RVLFTVSDTGIGIPVDMLSGIFGSFVQVDGASSRAFQGAGLGLAIVKRLVKLMGGQIFAD 624

Query: 776 SSDEGVTTINCRIPSK 791
           S +   T ++  +P K
Sbjct: 625 SIEGEGTNMHVELPFK 640


>gi|77458871|ref|YP_348377.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77382874|gb|ABA74387.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 1163

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 7/233 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L E+ E L+++ + K+ F+ ++S+ELR+PL + +    LL  +   +L+++Q ++
Sbjct: 475 QAQVQLEERAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVKF 534

Query: 610 VEYISASSTILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            E I ++   LLNL+NDILD++ V+AG   +M  N S   L D L  + + +A  + +  
Sbjct: 535 AESIYSAGNDLLNLINDILDISKVEAGKLEVMPENTSVARLADGLRGMFEPLAA-VKQLA 593

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +++  D    +   DRQRL Q+   +LSNA+ F+  G+  +  A + +    F V+++
Sbjct: 594 FSVQLQPDAP-STLFTDRQRLEQVIKNLLSNAVKFTEHGTVSLTIAGQPDDRIAFIVRDS 652

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           G  I  D  +S+F  F        R+  G GLGLSI      L GG +S+SS+
Sbjct: 653 GIGIAADQQESIFEAFRQADGTTNRKYGGTGLGLSISRDLATLLGGSISVSSA 705


>gi|317478901|ref|ZP_07938049.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904935|gb|EFV26741.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 294

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 130/239 (54%), Gaps = 5/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVE 611
           + L   NE   +++++KN+F+ ++++E+R+PL  I+GFT +L  +++  L+ + +  +++
Sbjct: 50  KTLQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTML--AEMDDLDRETRMAFLK 107

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +   LL LVND+LD + ++A  ++ N   + +N L++EV  +   + H   I+++ 
Sbjct: 108 EINDNKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEF 167

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        V DR R  Q+   ++ NA+ F+  GS  I      N +F F V + G  I 
Sbjct: 168 VERLPQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGID 227

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           E    ++F RFV   +    +G GLGLSI +S +  +GG + + S     +T    +P+
Sbjct: 228 EVGRHAIFERFVKMNY--NIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284


>gi|322417779|ref|YP_004197002.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320124166|gb|ADW11726.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 1084

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 126/238 (52%), Gaps = 5/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L + N  L + D +++ F+  VS+ELR+PLT+I  F+++L   ++     K+ ++V  I+
Sbjct: 814  LEQANTRLLELDRLRSDFLSTVSHELRTPLTSIRSFSEILLRYEVDD-PEKRRKFVAIIA 872

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            + +  L  ++ND+LDL+ ++AG ++L+   + L+ +      +    M E  ++ +V  +
Sbjct: 873  SEAERLTRMINDLLDLSRIEAGRLELHPEPLELDAVFARAVGTAQPLMAEKGLQSRVEIE 932

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPED 733
              L   +AD  R+ Q+ + +LSN++ FS +G T+ L   R  G+F + SV + G  IP D
Sbjct: 933  AGLPQVLADADRMHQVLTNLLSNSVKFSPEGGTIRL-GGRRQGEFALISVTDQGPGIPAD 991

Query: 734  MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + VF RF  V    +    G GLGL+I    +   GG + + S        +  +P
Sbjct: 992  RLEQVFERFHQVRTPQKSHALGTGLGLTISREIVEKMGGRIWVESELGAGAVFSFTVP 1049


>gi|229590478|ref|YP_002872597.1| putative two-component system histidine kinase/response regulator
           fusion [Pseudomonas fluorescens SBW25]
 gi|229362344|emb|CAY49246.1| putative two-component system histidine kinase/response regulator
           fusion [Pseudomonas fluorescens SBW25]
          Length = 1184

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 131/231 (56%), Gaps = 5/231 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L ++ E L+++ + K+ F+ ++S+ELR+PL + +    LL  +   +L+++Q ++
Sbjct: 494 QAQLELEDRAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVKF 553

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I ++   LLNL+NDILD++ V+AG +++      +  L++ ++        +  +  
Sbjct: 554 AESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVARLVDGLRGMFEPLAADRKLGF 613

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           +V + +G       DRQRL QI   +LSNA+ F+ +G  V L  +R  G+ I F+V+++G
Sbjct: 614 QVDVQEGSPTMLFTDRQRLEQILKNLLSNAIKFTEQGD-VSLSVSRAPGEGIAFTVRDSG 672

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I  D  +S+F  F        RR  G GLGLSI      L GG++S++S
Sbjct: 673 IGIAPDQQESIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGYISVAS 723


>gi|260665099|ref|ZP_05865949.1| phosphate regulon sensor kinase PhoR [Lactobacillus jensenii
           SJ-7A-US]
 gi|260561153|gb|EEX27127.1| phosphate regulon sensor kinase PhoR [Lactobacillus jensenii
           SJ-7A-US]
          Length = 387

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 129/232 (55%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +  K+  + +VS+++R+PLT+IIG+  LLK     SL + Q +YV+     +  +  
Sbjct: 148 RQIERSKDDLITNVSHDIRTPLTSIIGYLGLLKAD--NSLTADQLKYVDIAYNKAGQMKA 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ D  T+++   K+N++ + L  +L +V      +  E NI + V ++       A
Sbjct: 206 LANDLFDYTTLNSTKTKVNFAPLHLTSMLEQVAAGFELEAEEKNISLNVNTNPDDLVIDA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++F+ ++SNA+ +    S + L A +   + +   V+NNG +IP+   + +F R
Sbjct: 266 DAEKLVRVFNNLISNALKYGHGASFINLSAKKIKANLVEIRVENNGEAIPKAALQKIFER 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  V  +   +  G GLGL+IV+  I+LH G ++   S+E +T+    +P K
Sbjct: 326 FYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKIT-CESNERITSFIIHLPFK 376


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 11/229 (4%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R +TE+    ++ +++K+ FV  VS+ELR+PLT+I G   +L +  L S + +  + ++ 
Sbjct: 796  RDITER----KQVEKMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSSTSEQGKRLLQI 851

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRI 669
             + S+  L+ L+NDILD+  +++G +K+      L DL+N    + Q +A K        
Sbjct: 852  ATDSTERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKA--GVSLS 909

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               S+       AD  R++Q  + + SNA+ FS  GSTV L         + +V++ G  
Sbjct: 910  IHNSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVTVQDTGRG 969

Query: 730  IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IPED  +S+F RF  V ++      G GLGL+I +S +  HGG + + S
Sbjct: 970  IPEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKS 1018


>gi|269217234|ref|ZP_06161088.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122]
 gi|269129371|gb|EEZ60456.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122]
          Length = 575

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 135/237 (56%), Gaps = 10/237 (4%)

Query: 547 DSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLN 603
           + ++ +RA  E+ NE L++ ++ K  F+  VS+ELR+PLT+II F DLL T   + G  +
Sbjct: 312 EQLQEQRAHVERVNERLKRDNQYKTDFLAIVSHELRTPLTSIIAFADLLDTHVPRDGGES 371

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   ++ I  +  ILL +V+++L+ A + +G  +++   I ++DL+  V QS+A    
Sbjct: 372 RRQ---LDEIEKNGQILLEMVDNVLETARIQSGRDEVSIELIDVSDLVGMVVQSLAPLAS 428

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIF 721
           +  I +      ++   ++D ++L +I S +++NA+ F+ +G +V +  ARD   G    
Sbjct: 429 KKGIALTSDVSSEVPLVMSDWEKLRRILSNLVNNAIKFTGEGGSVAVAVARDAEEGFVRI 488

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            V++ G  IP D  + +F RF        RR  G GLGLS+V+    + GG VS++S
Sbjct: 489 EVRDTGIGIPADKHELIFERFTQENMSTARRFGGSGLGLSLVKDLAGILGGDVSLTS 545


>gi|322419867|ref|YP_004199090.1| integral membrane sensor hybrid histidine kinase [Geobacter sp.
           M18]
 gi|320126254|gb|ADW13814.1| integral membrane sensor hybrid histidine kinase [Geobacter sp.
           M18]
          Length = 1364

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 127/242 (52%), Gaps = 3/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R L ++ + L +A  +K+ F+ ++S+ELR+PL +++  + +L       L+ ++  Y
Sbjct: 570 RRNRVLDQQKQLLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQGAARLSVEERGY 629

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +   LL+L+NDILDLA +++G   L +  +  + +  EV   +A    E  I +
Sbjct: 630 LGIIEKNGKHLLSLINDILDLAKIESGRQDLFFEAVAPDKVAAEVVDGLAVLASEKGITL 689

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + +   L S V D ++L Q+   ++ NA+ F+++G+ V L+ A+   + +F V++ G  
Sbjct: 690 ALSAPQALPSMVIDVKKLRQMLQNLVGNAVKFTAEGA-VTLRLAQLGNELLFEVEDTGIG 748

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I      S+F  F        R   G GLGL+IV+    L GG V++ S     +  + R
Sbjct: 749 IAPQYLDSIFQEFRQADGSTSRSYEGTGLGLAIVKKSARLLGGEVAVVSELGKGSVFSLR 808

Query: 788 IP 789
           +P
Sbjct: 809 LP 810


>gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 753

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 137/266 (51%), Gaps = 15/266 (5%)

Query: 523 DSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVS 577
           D  LE + +P L N    ++++ +   + A +   ++ E  R A E     K+ F+  +S
Sbjct: 326 DVWLETNQVPILGNQGGEMSYIAIERDMTAAKQNAQQLEEARLAAEEGGRAKSDFLATMS 385

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+P+  +IG   LL+ +    L+  Q  Y   I +S+  LL L+NDILDL+ +DAG 
Sbjct: 386 HEIRTPMNGVIGMAQLLEET---DLDGDQRLYTNTILSSAKTLLALINDILDLSKLDAGQ 442

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILS 696
           + LN     L+  L E  Q + T+     + ++V  D  L  + V D  RL QI + ++ 
Sbjct: 443 ISLNPCNFDLHQCLEETIQLLLTQAEAKGLTLEVERDVDLPRYLVGDDHRLRQILNNLVG 502

Query: 697 NAMDFSSKGS---TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           NA+ F+ KG    +V ++ A+D G  +  ++ + G  IP+DM   +F RF        RR
Sbjct: 503 NAIKFTEKGRVKVSVEMEPAQDGGVLLNCAIIDTGIGIPKDMLTGIFERFSQADAAISRR 562

Query: 753 --GVGLGLSIVESFINLHGGHVSISS 776
             G GLGL+I        GG ++++S
Sbjct: 563 FGGSGLGLAISRRLAEAMGGRITVTS 588


>gi|300867587|ref|ZP_07112236.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334394|emb|CBN57406.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 780

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 145/311 (46%), Gaps = 25/311 (8%)

Query: 485 ATCSRYYNESDGWDLFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           A   R++   DG   +A+ I+TS  DE   L+G  +++ D                 T  
Sbjct: 333 AEDERWHIRKDGSRFWASGILTSLQDE-AGLRGFAKIMRD----------------FTER 375

Query: 544 NVTDSVRAERALTEKNEALRK--ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              +  RA+  + E+N   +   A+ +K+ F+  +S+ELRSPL  ++G+  LL T K   
Sbjct: 376 KQAEDERAQLLIREQNARTQAETANRMKDEFLATLSHELRSPLNAMLGWLRLLNTRKFDE 435

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             + ++  +E I  S+     LV D+LD++ +  G ++LN   + L  ++     ++   
Sbjct: 436 KTTAKA--METIERSARAQAQLVEDLLDVSRIIQGKVRLNVRPVELVTVIEAALDTVRPA 493

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                IR++ I D   G    D  RL QI   +LSNA+ F+ KG  V +   R N     
Sbjct: 494 AEAKEIRLQTIFDSTGGLVAGDSDRLQQIVWNLLSNAVKFTLKGGQVQVYLERVNSHVEI 553

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  I  D    VF+RF        R   G+G+GL+IV   + LHGG V   S  E
Sbjct: 554 SVRDTGLGIKPDFLPFVFDRFRQADSSIARTYTGLGIGLAIVRHLVELHGGSVRAQSEGE 613

Query: 780 GV-TTINCRIP 789
           G   T   ++P
Sbjct: 614 GKGATFTIKLP 624


>gi|190572926|ref|YP_001970771.1| putative two-component sensor histidine kinase response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
 gi|190010848|emb|CAQ44457.1| putative two-component sensor histidine kinase response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
          Length = 923

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 138/256 (53%), Gaps = 8/256 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F +++   +A+ AL+   +A   A++ K++F+  +S+E+R+PL  ++G  +LL  + 
Sbjct: 419 LCVFHDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHT- 477

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             SL+++QSQY+  I +SS++LL L++D+LD++ +++G + L  +     +L   V +S 
Sbjct: 478 --SLDARQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSF 535

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
           A       ++I V +D +L + V  D  R+ Q+   +LSNA+ F+  G  ++ ++  +  
Sbjct: 536 AASATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVMLRVRQVQRE 595

Query: 717 GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           G+     + V + G  I  +    +F  F         +G GLGLSI +  + L  G + 
Sbjct: 596 GESSVLAWQVTDTGVGIAAEEQARLFEPFRQVRGAASAQGTGLGLSISDRLVRLMSGELQ 655

Query: 774 ISSSDEGVTTINCRIP 789
           + S     ++ + R+P
Sbjct: 656 VVSEPGLGSSFSVRLP 671


>gi|320106380|ref|YP_004181970.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319924901|gb|ADV81976.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 791

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 181/393 (46%), Gaps = 46/393 (11%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +V  E   + L       +D + +G+     DG   + NPA  S+       L  G
Sbjct: 420 DITEKVRAEESLSALTLQSNSILDSVGDGIFATSLDGVATVVNPAAASM-------LGYG 472

Query: 478 TH----------IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-----S 522
           TH          +R   A  + Y ++        + I     +R++++ + +L      S
Sbjct: 473 THEILGRKISDLLRLTRADGTEYADDE-------SPIERSLHQREAVRASTDLFWRKDGS 525

Query: 523 DSVLEYSIIPL-PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              +EY   P+  + +     V  TD+       TE+    R  D++K+ F+  VS+ELR
Sbjct: 526 SFPVEYVACPIVKDGRATGIVVAFTDT-------TER----RALDKMKDEFISTVSHELR 574

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT++     L+ +  L S   KQ Q +E    ++  L++LVNDIL+L  + +G  +L+
Sbjct: 575 TPLTSMRASLGLIASGALASRPEKQKQMLEIAIGNTERLVSLVNDILELERIGSGKAELH 634

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            +    +DL       +     +  I+ ++ + G   +   D  R+LQ  + +LSNA+ F
Sbjct: 635 STLSSADDLFRRATGLLTGTAAKAGIKFEIEARGV--NVWGDPDRILQTITNLLSNAIKF 692

Query: 702 SSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           S +G  + L+A   +GD     V ++G  IP D  +S+F RF  V  +      G GLGL
Sbjct: 693 SPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKLESIFERFQQVDASDSRAMGGTGLGL 752

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I  S ++ HGGH+   S     +T    +P+K
Sbjct: 753 AICRSIVSQHGGHIWAESKYGRGSTFFFTLPTK 785


>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1233

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 128/244 (52%), Gaps = 11/244 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T    AE AL +  EA   A   K  F+ ++S+E+R+P+  IIG T+L   ++L 
Sbjct: 575 TNADITARREAEAALRQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTELALDTEL- 633

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             NS+Q +Y+  + +S+  LL ++NDILD + +++G + +      L  +L E  +S+A 
Sbjct: 634 --NSEQREYLGLVQSSADALLTILNDILDFSKIESGKLDIENIEFSLEHMLRETMKSLAV 691

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
           + H+  + + + ++       + D  RL Q+   ++ NA+ F++ G   +    LK A +
Sbjct: 692 RAHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGNAIKFTASGEIEVDVQCLKGAPE 751

Query: 716 NG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 FSV++ G  I  D  +++F  F        RR  G GLGL+I    ++L GG +
Sbjct: 752 GQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTRRYGGTGLGLTISAQLVSLMGGSI 811

Query: 773 SISS 776
           ++ S
Sbjct: 812 ALES 815


>gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1162

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 129/232 (55%), Gaps = 5/232 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L+ K E L ++   K+ F+ ++S+ELR+PL +++    LL+ +K  +L+SKQ  Y 
Sbjct: 481 ARQQLSLKAEELEQSSRYKSEFLANMSHELRTPLNSVLILARLLEENKDRNLSSKQVDYA 540

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S + LL L+NDILDL+ ++AG +++    + ++ ++++++Q       E +I   
Sbjct: 541 GIIHKSGSDLLKLINDILDLSKIEAGKVEMQIEPVSVSAMVSDLEQLFRVVADEKSIHFS 600

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGS 728
             I+ G   +   DRQRL Q+   +LSNA  F+ K   + L+  A  +G +I +V +NG+
Sbjct: 601 TEIAAGVPATVQTDRQRLEQVIKNLLSNAFKFTPKNGNIQLRLTAAADGVYI-AVSDNGT 659

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            IP +  + +F  F        R+  G GLGLSI +  +   GG + + S +
Sbjct: 660 GIPVEKQQLIFEAFRQADGSTSRKYGGTGLGLSISKELMKRLGGEIRLESKE 711


>gi|171060844|ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170778289|gb|ACB36428.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 490

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 174/382 (45%), Gaps = 31/382 (8%)

Query: 431 TLVKVQG----------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           TL+KVQ           E ++   +G+ +  P G I ++N     L+      L  G  +
Sbjct: 117 TLIKVQRDAKLMEARFRELLESTPDGIVMVNPTGHIVIANSQAERLFGYPPGGLR-GRSV 175

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL------SDSVLEYSIIPL- 533
             +     R+ + +     F          ++++   L+L       ++  +E S+ PL 
Sbjct: 176 DQLLPERYRHAHVAHRSQYF------LQPRKRAMGSGLDLAGLRRDGTEFPIEISLGPLR 229

Query: 534 --PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
               A  M    ++++  R ERAL EKN  L  A+E K  F+ ++S+ELR+PL  IIGFT
Sbjct: 230 TEDGAFVMSAIRDISERKRFERALQEKNVELAAANEAKTRFLANMSHELRTPLNAIIGFT 289

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             L     G L   Q + +  + AS   LL L+ND+LD+A ++AG  +++   + +  LL
Sbjct: 290 GTLLMRLPGPLTPDQERQLRTVQASGRHLLALINDLLDVAKIEAGKAQIHLEMLDVGALL 349

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +EV  ++  +     + + +          +DR+ L QI   ++ NA+ F+  GS  +  
Sbjct: 350 HEVVSTLHPQAVAKGLALTLSVPEPALQCESDRRMLNQIVINLIGNAIKFTDAGSIHVGL 409

Query: 712 AARDNGDFIFSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            AR  G F   V + G  I  +D  K    F+R VS+  R    G GLGL + +    L 
Sbjct: 410 RARAGG-FEIEVTDTGIGIGTDDQAKLFGAFSRVVSSQGR-VAEGTGLGLHLSQKLAALL 467

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + + S     +  + R+P 
Sbjct: 468 GGTIDVRSEAGRGSCFSLRVPG 489


>gi|262402984|ref|ZP_06079544.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
 gi|262350483|gb|EEY99616.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
          Length = 1586

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 126/257 (49%), Gaps = 14/257 (5%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            N+TD +  E+ L +      +A + K+ F+ + S+E+R+PL  I+G T LL      SL 
Sbjct: 817  NITDRLAFEQTLKKALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDE---SLT 873

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q + V+ I  S   LL +VND+LDL+ ++A  M L    + L + L EV    +T+  
Sbjct: 874  ESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAE 933

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD 718
              N+  K+     L  +V AD  RL QI + +LSNA+ F+S G   +     D    NG 
Sbjct: 934  AKNLDFKLEMGADLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALRVEVIDKFSWNGA 993

Query: 719  ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  FS+ + G  I E+  K +F  F        RR  G GLGLSIV   + L  G +
Sbjct: 994  EKNIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKI 1053

Query: 773  SISSSDEGVTTINCRIP 789
             + SS+   +T    +P
Sbjct: 1054 GVESSEGQGSTFWAEMP 1070


>gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 710

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 10/220 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A + K  F+  V++E+R+PL  IIGF+ L+ T +L   + ++ + V+ I +SS ILL L
Sbjct: 328 EAAKQKGEFLAQVTHEIRTPLNAIIGFSQLMDTQRL---DGQEKESVDAIQSSSRILLTL 384

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           VND+LD + +++G + L Y      D +NEV   +     E NI I+  I+ G     + 
Sbjct: 385 VNDLLDFSKLESGKLTLQYQPFNPVDAVNEVVALMRVLASEKNIEIEPKIAIGNRVCLLG 444

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKS 737
           D  R+ Q+   +LSNA+ F+     V+++A+ D  +         VK++G  I  +  K 
Sbjct: 445 DEFRVKQVVINLLSNAIKFTPARGKVVVEASLDQSEGQKKCLKIRVKDSGIGIAPEHLKE 504

Query: 738 VFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +F  F    A    + G GLGL+I +  + LHGG +S+ S
Sbjct: 505 IFEDFKQIGAASAGKPGTGLGLAICKRIVELHGGKISVES 544


>gi|220908923|ref|YP_002484234.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865534|gb|ACL45873.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 970

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +A   A++ K++F+ ++S+ELR+P+  IIG++++L          +    ++ I 
Sbjct: 464 LEHARQAAEAANQAKSTFLANMSHELRTPMNAIIGYSEMLIEEAADLEPEEFVPDLQKIQ 523

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A+   LL+L+NDILDL+ ++AG M L   T  L  LL+ V  +I   + +N+  ++V + 
Sbjct: 524 AAGKHLLSLINDILDLSKIEAGRMDLYLETFSLQSLLDGVIATIQPLLEKNSNTLEVKAP 583

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             LGS  AD  ++ Q    +LSNA  F+ +G T+ L   R +    F V + G  +  D 
Sbjct: 584 TDLGSMHADLTKVRQSLFNLLSNACKFTDRG-TITLTVTRQDDAINFKVSDTGIGMTPDQ 642

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F        R+  G GLGL+I   F  + GG++++ S+    TT    +P
Sbjct: 643 MARLFQPFTQADASTTRKYGGTGLGLTITNRFCQMMGGNITLESTPGVGTTFTVSLP 699


>gi|91773147|ref|YP_565839.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91712162|gb|ABE52089.1| pleC-like multisensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 507

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 2/243 (0%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   ++T+  + E AL         A+  K+ F+ ++S+ELR+PL  IIGF+++L   K
Sbjct: 263 ILAGEDITERKQVEEALLNAKHMAEDANRTKSEFIANMSHELRTPLNAIIGFSEILIEKK 322

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G LN KQ +Y+  I  S   LL ++N IL+++ +++G +++NY TI L DL+ ++K+ I
Sbjct: 323 FGDLNDKQDKYLNNIFISGKKLLEIINSILEISKIESGNIEINYKTISLGDLIEDLKEDI 382

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K+ +    +       + + + D  ++ +    ++ NA+ FS K   V +     +  
Sbjct: 383 KEKLPDQAEMVSFEILTNIENIIVDINKVEKSVLHLIENAIKFSDKTQHVEVSLESVDEM 442

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V + G  I E+  K +F  F        R   G+G+GL I++    LHGG ++I S
Sbjct: 443 IAFKVTDRGIGITEEDIKRLFKPFNQLDASSTRVYGGLGIGLYIIKKIAELHGGGLAIKS 502

Query: 777 SDE 779
             E
Sbjct: 503 ELE 505


>gi|255016502|ref|ZP_05288628.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 622

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 10/242 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L  +Q+ Y+ 
Sbjct: 382 EEDLIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEE--DLELRQN-YIS 438

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I  ++ +LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E   I + 
Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPEGVEITLD 498

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
              D     F  DR RL QI   +L+NA+  + KGS        D G  + F V + G  
Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCG 555

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D   ++F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P
Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613

Query: 790 SK 791
            K
Sbjct: 614 MK 615


>gi|154252383|ref|YP_001413207.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156333|gb|ABS63550.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 523

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 3/230 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNL 623
           AD+ K+ F+  +S+ELR+PL  I+GF++++     G LN ++ S YV+ I  S   LL+L
Sbjct: 280 ADQAKSQFLATMSHELRTPLNAILGFSEIMAAETFGPLNNARYSDYVQDIFKSGKHLLSL 339

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+LD   VDAG + L+   I L + + +  + I+ +    NI +       L   +AD
Sbjct: 340 INDVLDFTRVDAGELHLHEEDIDLEEAVTDTIRMISAQAKAQNIALDYEIAADLPHLIAD 399

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
            +R+ Q+   +LSNA+ F+  G  V + A   +G  +  V + G  I  +       RF 
Sbjct: 400 HRRIRQVLLNLLSNAVKFTPDGGEVHIGALVADGAMLLRVTDTGIGIAAENIPLALERFG 459

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + +    +  G GLGL + +  +  HGG + I+S     TT+    P +
Sbjct: 460 QIDSDLSRKYEGTGLGLPLAKCLMEHHGGCLDIASELGRGTTVTVTFPPE 509


>gi|325681059|ref|ZP_08160591.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324107288|gb|EGC01572.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 470

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 5/241 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  E    L+  D ++NSF+ +VS+ELR+P+T+I GF D +    +    S+Q  Y+  I
Sbjct: 229 AFNEMAANLKSYDTMRNSFLANVSHELRTPMTSIGGFVDGILDGTIPK--SQQGYYLRII 286

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S+    L  LV  +L+LA ++AG ++ N ++  + + + +   +   +++E  I I+ + 
Sbjct: 287 SSEVGRLTRLVKSMLNLAKIEAGELEPNKTSFAVTEPILDTLLTFEPRINEKEIDIRGLD 346

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             ++  + AD   + Q+   ++ NA+ F  KG  +    A DN     S++N+G  + ED
Sbjct: 347 VQRINMY-ADIDLIHQVMYNLIENAIKFVDKGGYIEFNFAEDNDQTTVSIRNSGEGLEED 405

Query: 734 MCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               VF+RF  ++  RG   +G+GLGL+I  S + +HGG + + S     T     IP  
Sbjct: 406 ELPLVFDRFYKTDKSRGIHAQGLGLGLNIARSIVEIHGGKIMVKSVKGEFTEFTFNIPKN 465

Query: 792 E 792
           E
Sbjct: 466 E 466


>gi|194364516|ref|YP_002027126.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347320|gb|ACF50443.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 925

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 137/256 (53%), Gaps = 8/256 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F +++   +A+ AL+   +A   A++ K++F+  +S+E+R+PL  ++G  +LL  + 
Sbjct: 421 LCVFHDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHT- 479

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+ +QSQY+  I +SS++LL L++D+LD++ +++G + L  +     +L   V +S 
Sbjct: 480 --TLDPRQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSF 537

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       ++I V +D +L + V  D  R+ Q+   +LSNA+ F+  G  V+    ++  
Sbjct: 538 AASATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVVLRVRQVQRE 597

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            ++   ++ V + G  I  +    +F  F         +G GLGLSI +  + L  G + 
Sbjct: 598 AESSVLVWQVTDTGVGIAAEEQARLFEPFRQVRGAASAQGTGLGLSISDRLVRLMSGELQ 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     ++ + R+P
Sbjct: 658 VVSEPGLGSSFSVRLP 673


>gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 642

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 11/238 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++   D    +R + EK EA  K ++ K+ F+  +S+E+R+P+  +IG TDL+  ++   
Sbjct: 239 YIIAKDMTEQKRLIIEK-EAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE--- 294

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q +YV+ I  S T LLN++NDILD + +++G  +L   T  L   L+E    I  K
Sbjct: 295 LDEEQREYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPK 354

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718
             + NI +   ++         D  +L Q+   +LSNA+ F+  G+  I ++  RD  + 
Sbjct: 355 ALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCVRDQANS 414

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
               FSV + G  +P +    +F  F    H   R+  G GLGL+I +  + L GG +
Sbjct: 415 KLIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDI 472


>gi|15965635|ref|NP_385988.1| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|307314039|ref|ZP_07593652.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
 gi|307321216|ref|ZP_07600618.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|15074816|emb|CAC46461.1| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306893118|gb|EFN23902.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|306899161|gb|EFN29800.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
          Length = 511

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 130/248 (52%), Gaps = 8/248 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++ T  LG L N    
Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSNPTYK 301

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LLNL+N+ILDL+ ++AG  +L+   + L +++ +    +  +    NI
Sbjct: 302 EYTLDIHRSGEHLLNLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRARGKNI 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
            I    +  + S  AD + + Q+   +LSNA+ F+  G  V +K      G    S+++N
Sbjct: 362 TIGHQFEQAMPSVWADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLSIRDN 421

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783
           G  IPE+    V + F   S A +   +G GLGL IV++ +  HGG   + S   EG   
Sbjct: 422 GPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHGGQFILRSKLREGTEA 481

Query: 784 INCRIPSK 791
           I    P +
Sbjct: 482 IAILPPRR 489


>gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
 gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
          Length = 1407

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 130/258 (50%), Gaps = 10/258 (3%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            F N     R E AL E   A   A+  K+ F+ ++S+E+R+P+  +IG T LL  +   S
Sbjct: 861  FTNAEVRHRHETALVEARYASESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLDT---S 917

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+ +Q  Y + +  S+  LL L+NDILD + ++AG  +L      L ++L++V   +A +
Sbjct: 918  LSDEQRGYAQAVMESADFLLGLINDILDFSKIEAGKFELEMLDFDLRNVLDDVSSIMAVR 977

Query: 662  MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG 717
              +  +     +  ++  F+  D  RL Q+ + +  NA+ F+ +G    +V L +     
Sbjct: 978  ARDKELEFICAASPEVTPFLRGDPGRLYQVLNNLAGNAIKFTHQGEVAVSVALVSGSAQE 1037

Query: 718  DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            D + FSV++ G  IPE     +F+ F        R+  G GLGL+I    + L GG + +
Sbjct: 1038 DLLRFSVRDTGIGIPEQKIAILFSSFTQVDASTTRKFGGTGLGLAISRQLVELMGGEIGV 1097

Query: 775  SSSDEGVTTINCRIPSKE 792
            SS +   +     IP K+
Sbjct: 1098 SSRENEGSEFWFTIPFKK 1115


>gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
 gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
          Length = 2370

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 6/241 (2%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E  LT +N A   A+ IK+ F+  +S+ELR+PL  I+G+T L+++ KL    S ++  +E
Sbjct: 1982 EAELTARNAA-ESANRIKDEFLAVLSHELRTPLNPILGWTKLMRSRKLDQATSDRA--LE 2038

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I  ++ +   L+ D+LD++ +  G + LN+  I L  ++    +++       +I I+ 
Sbjct: 2039 TIERNAKLQTQLIEDLLDVSRILQGKLNLNFGPINLVSVIEAAIETVRLSAQAKSIEIQT 2098

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            I +  +GS + D  RL Q+   ILSNA+ F+     V +K  +        V + G  I 
Sbjct: 2099 IFEFGVGSVLGDANRLQQVIWNILSNAIKFTPSEGQVKIKLEQVGSQVQICVTDTGKGIA 2158

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRI 788
             +    VF+ F     A   Q  G+GLGL+IV   + LHGG V   S  +E   T   R+
Sbjct: 2159 PEFLPYVFDYFRQADGATTRQFGGLGLGLAIVRHLVELHGGTVQAESLGEEQGATFTVRL 2218

Query: 789  P 789
            P
Sbjct: 2219 P 2219


>gi|298482642|ref|ZP_07000826.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271105|gb|EFI12682.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 637

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 146/273 (53%), Gaps = 14/273 (5%)

Query: 508 DDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           D + K ++  LE+  D  L Y    I P    + +    ++ D ++  + L E       
Sbjct: 222 DGKLKEIEYPLEV--DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAED 279

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD++K+ F+ ++S+E+R+PL  I+GF++++  ++      ++ +Y+E I  +S +LL L+
Sbjct: 280 ADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTES---EEEKMEYLEIIQRNSNLLLQLI 336

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDL+ +++G  ++++  + +  L+ EV++    KM ++N+ +KVI          DR
Sbjct: 337 NDILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDR 395

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            R++Q+    LSNA+  + KGS  +    +  G ++   V + G  I ++    +F RF 
Sbjct: 396 NRVMQVLFNFLSNAIKNTEKGSITL--GLKHEGPWLKLYVSDTGCGISKEKLPQIFTRFE 453

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 Q  G GLGLSI +S +   GG + ++S
Sbjct: 454 KLNDFVQ--GTGLGLSICKSIVERLGGRIEVTS 484


>gi|160886838|ref|ZP_02067841.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
 gi|156107249|gb|EDO08994.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
          Length = 936

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 135/239 (56%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T +L   
Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL--- 742

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            S++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 743 -SERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTSGDVDVNLLCEDIVRSMGMKA 801

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                 ++++ D  L     ++DR R+ Q+ S  ++NAM F+S+GS  +    +D G+  
Sbjct: 802 KG---EVELVLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYKLKD-GELE 857

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 858 FYVEDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911


>gi|148550789|ref|YP_001260228.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148503208|gb|ABQ71461.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 1143

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 3/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA  AL  K   L +A + K+ F+ ++S+ELR+PL +++  + LL  +  G+L+ +Q +Y
Sbjct: 456 RAGAALGAKAHELEQASQYKSDFLANMSHELRTPLNSLLILSKLLGDNSQGNLSDEQIKY 515

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +S   LL L+NDILDL+ ++AG +++   T+ L  L  +++++      +  +  
Sbjct: 516 ANTIESSGNDLLTLINDILDLSKIEAGHIEIRPETVALQRLTGDLRRTFDPLAEKKGLGF 575

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            + +SD    +  +DR RL QI   +LSNA  F+ +G   +     D+    F+V + G 
Sbjct: 576 DISLSDDCARTIESDRMRLEQILKNLLSNAFKFTERGQVSLAIERVDDAFIRFAVSDTGI 635

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +   S+F  F        R+  G GLGLSI      L GG +++ S     +T   
Sbjct: 636 GISAEQQASIFEAFHQADATISRKFGGTGLGLSISRELARLLGGRIALESRPGEGSTFTL 695

Query: 787 RIP 789
            IP
Sbjct: 696 TIP 698


>gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 537

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 159/339 (46%), Gaps = 29/339 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + EG+ V    G + L NPAF  L+   ++    G  I  IA    R+    +  + F A
Sbjct: 208 MGEGLMVSDAGGTVTLVNPAFLELFGLTQS--VEGRQIIEIA----RF---PELHETFRA 258

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKN 559
           +++S  +                +E   +PL + + +LT    +   D +R   A+    
Sbjct: 259 VVSSRSEH---------------VEEMTLPLGDEKQVLTHWVPLMEEDELRGVVAVFHDI 303

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             L++ + ++  FV +VS+ELR+P+T I G+ + L    +     +  +++E I + S  
Sbjct: 304 SDLKRLEVVRRDFVANVSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSER 363

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+ D+L L+ +++G ++L  + I L+  ++     +  K     I I + +      
Sbjct: 364 LADLIRDLLTLSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIVIDISALAGAPP 423

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD  RL Q+   ++ NA+ ++  G T+ L A   +G    SV + G  IP      +F
Sbjct: 424 VLADPGRLEQVLINLMDNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLPRIF 483

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  V  A      G GLGLSIV+  I LHGG +++ S
Sbjct: 484 ERFYRVDAARSRDEGGTGLGLSIVKHIIQLHGGSITVES 522


>gi|220917378|ref|YP_002492682.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955232|gb|ACL65616.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 729

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL  AD  K++F+ +VS+ELR+PL  ++G+ DLL   KLG L  +Q   ++ +++S   L
Sbjct: 484 ALEAADRRKDNFLANVSHELRTPLVTVLGYADLLLADKLGPLAPRQRTALQVVASSGRRL 543

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              + ++L+L+  +       ++   L D++ +   ++A +  E  +R++          
Sbjct: 544 RAFIEELLELSRHELARPAEPFAPFPLADVITQAVVALAPRFAERGLRVRARVARGTPPA 603

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
              R+R+LQ+   +L NA  ++  GS + L AA        SV + G  IP +    +F 
Sbjct: 604 QGQRERVLQVIVNLLGNAERYAPAGSAIHLAAAAVGDRVAVSVTDRGPGIPVEHQALIFE 663

Query: 741 RFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R      +A R +   +G+GLSI +  +  HGG + + S
Sbjct: 664 RLYQVRDDAPRREGGALGIGLSIAKGIVEAHGGEIGVRS 702


>gi|281355046|ref|ZP_06241540.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317926|gb|EFB01946.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1559

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 9/255 (3%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            V +T   + ++ LTE  EA + AD  K+ F+  +S+ELR+PL  +IGF++LL++  +   
Sbjct: 1147 VEITQLNQRQKKLTETMEAAQAADRAKSYFLATMSHELRTPLNAVIGFSELLQSGPMP-- 1204

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +Q   +  I+ +   LL L+NDILDL+ ++AG M +    +   + L  V        
Sbjct: 1205 DQEQQNALRAINVAGATLLELINDILDLSKLEAGKMDIIPELLDPQEFLQTVSAIFTHTA 1264

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----G 717
                + + V     +     DR+RL Q+   +L NA  F+  G  V+L+AA +      G
Sbjct: 1265 RTRKLSLTVTVPPAMPHLKFDRKRLRQVLVNLLGNAFKFTETGG-VLLEAAFETVNDHFG 1323

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              I  V + G  +  +  + +F+ F  + H     G GLGL+I +  +   GG + ++S 
Sbjct: 1324 TLILKVSDTGIGMSPETVRQLFDPFRQH-HTRDYEGTGLGLAISQRLVARMGGSIEVTSE 1382

Query: 778  DEGVTTINCRIPSKE 792
             E  +T    +P  E
Sbjct: 1383 PEHGSTFRIVLPGVE 1397


>gi|227820916|ref|YP_002824886.1| predicted sensor histidine kinase protein with ATP-binding domain
            [Sinorhizobium fredii NGR234]
 gi|227339915|gb|ACP24133.1| predicted sensor histidine kinase protein with ATP-binding domain
            [Sinorhizobium fredii NGR234]
          Length = 1117

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 130/254 (51%), Gaps = 8/254 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     +   A+  K  F+  VS+E+R+PL  IIGF+D++ +   G + 
Sbjct: 861  DITQWKRTEEELRNAKRSAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIG 920

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            + +  Y+EY   I  S   +L++VND+LD++ ++AG M+L++S + LN+ ++E    +  
Sbjct: 921  NPR--YIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMELDFSAVDLNEAVSEAVSLVQP 978

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+    G +   VAD + + QI   IL+NA+ F+  G  +++  + + NG  
Sbjct: 979  QANSQRVIIRTSLSGSVPEVVADGRSIKQIALNILANAIRFTPSGGQIVVSTSYETNGSV 1038

Query: 720  IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            I  +++ G  +  +        F  V+   R +  G GLGL + ++    +     ISS+
Sbjct: 1039 ILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGEGTGLGLPLTKAMAEANRAQFGISSA 1098

Query: 778  DEGVTTINCRIPSK 791
                T +    PS+
Sbjct: 1099 PNEGTLVEISFPSQ 1112


>gi|15887959|ref|NP_353640.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15155563|gb|AAK86425.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 1275

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++ T + G + 
Sbjct: 1018 DITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMATERFGPIG 1077

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            + +  YVEY   I  S   +L++VND+LD++ ++AG M +++  + LN+ + E    +  
Sbjct: 1078 NPR--YVEYANDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEAVSLVQP 1135

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  A + NG  
Sbjct: 1136 QANNQRVIIRTALAQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAYEANGSV 1195

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISS 776
               +++ G  +     +     F   A  G+R    G GLGL + ++ ++ +  + SI+S
Sbjct: 1196 SLRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRANFSITS 1255

Query: 777  SDEGVTTINCRIPSK 791
            +    T +    PS+
Sbjct: 1256 TPNEGTLVEITFPSQ 1270


>gi|298490004|ref|YP_003720181.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298231922|gb|ADI63058.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 640

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 8/218 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +++ F+  +S+EL +PLT +IG +  L    LG L+ +Q  Y++ I  S   LL ++N
Sbjct: 409 NRLRSEFLATISHELLTPLTYVIGMSSTLLLWPLGELSKRQRDYLQTIHDSGEHLLEMIN 468

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG----SFV 681
           DILDL+ V+AG   LN +   L         S+  K     + +K+  D ++     SF 
Sbjct: 469 DILDLSQVEAGRTVLNITDFSLVKSAQNTLDSLLEKARSEKVTLKL--DLQINPSHDSFT 526

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  R+ QI   +L+NA+ F+ +G  V L+   ++   IF V++ G  IPE+    +F +
Sbjct: 527 GDSTRVEQILWNLLTNAIKFTPEGGNVTLRLWVEDATAIFQVEDTGIGIPEEQLPLLFEK 586

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F  +   +R +  G G+GL++ +  + LH G + + S+
Sbjct: 587 FQQLDTPYRRRYEGTGVGLALTKQLVELHRGRIEVEST 624


>gi|239787555|emb|CAX84024.1| Sensor protein [uncultured bacterium]
          Length = 595

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 9/268 (3%)

Query: 532 PLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKN----SFVQHVSYELRSPLTN 586
           P+ N + ++T FV V + +   +   +  +A R+  EI N      + ++S+ELR+PL  
Sbjct: 319 PVRNKEGLITHFVAVHEDITQRKQAEQATQAAREQAEIANRAKTELLANMSHELRTPLNA 378

Query: 587 IIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           IIGF++ +K    G L S K  +Y E I+AS   LL L+NDILD++ ++AG   L    +
Sbjct: 379 IIGFSEGMKLQLFGPLGSAKYEEYAEDINASGQHLLKLINDILDVSAIEAGKTTLQEELL 438

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            + ++     + +  +  + ++ + + +   L   +AD +R+ QI   +LSNA+ F+ +G
Sbjct: 439 NVVEIAETSLRLVRARAEKGSVSLFLEASDGLPPLLADGRRIKQILLNLLSNAVKFTPEG 498

Query: 706 STVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
             V LKA  D  G    +V + G  + E         F  V      +  G GLGL + +
Sbjct: 499 GRVTLKAGIDEVGRLHLAVADTGIGMDEKELTLAMTEFGQVDGGLDRRHEGTGLGLPLTK 558

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +HGG  S+ S     TT +   P+
Sbjct: 559 GLVEIHGGIFSVESKKGHGTTASAIFPA 586


>gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 1127

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 132/264 (50%), Gaps = 17/264 (6%)

Query: 526 LEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           ++ +I+P  N        +    ++TD   AE  L E NE   ++ + K+ F+  +S+E+
Sbjct: 504 VDTTIVPFMNENNKPKSYVAIRTDITDKKAAELELIEANEIAEESVKAKSEFLATMSHEI 563

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  +IG   LL  +KL     +Q+   E    S+  LL L+NDILD + ++A  M+L
Sbjct: 564 RTPMNGVIGMLGLLMNTKLDETQRRQASLAE---GSAKALLTLINDILDFSKLEAEKMEL 620

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +     L D L   + +IA K  E  I + +  SD K     AD  R+ QI   I+ NA+
Sbjct: 621 DNIDFNLRDELETFRDTIAIKAQEKGIEVILDTSDIKTDIINADLGRIRQILFNIVGNAV 680

Query: 700 DFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
            F+SKG  V++KA+     + N   I  + + G  IP D    +F  F        R+  
Sbjct: 681 KFTSKGH-VLIKASLTLVDKVNARLILKMSDTGIGIPNDKLDRLFESFSQVDASTTRKYG 739

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL+IV+   +L GG + + S
Sbjct: 740 GTGLGLAIVQKLCSLMGGKIDVKS 763


>gi|39997026|ref|NP_952977.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983914|gb|AAR35304.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 793

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 9/233 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L++  EA   A + K+ F+ +VS+E+R+P+  ++G   LL  +    L +KQ +Y
Sbjct: 267 RAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLET---DLQAKQREY 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I +S  +L+ ++ND+LD + +++G +K+         ++ E+      +  +  + +
Sbjct: 324 AEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQKGVFL 383

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFS--VKN 725
           +    G++    + DR RL Q+   +L NA+ F+ KG+ T+ ++ + + G    S  V +
Sbjct: 384 EYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKGTITLTVRGSVEGGVCRLSCIVSD 443

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  IP+DM   +F+ F        RR  G GLGL+IV   + L GG VS  S
Sbjct: 444 TGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDS 496


>gi|329965407|ref|ZP_08302331.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328522199|gb|EGF49313.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 894

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 210/443 (47%), Gaps = 48/443 (10%)

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVI--------VTSNPRGGTIWMF-ENLTVQ 422
           K+WKE   SV +         H P      V+        VTS+   GT+W F  ++T +
Sbjct: 306 KSWKEFAESVKRGDTAQGYIVHNPLPLCPEVLAIEGNAYWVTSDKGEGTVWTFGRDVTSR 365

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +  E +     ++  + I++L  G+ V        +SN  F+ +++  E      ++ R 
Sbjct: 366 IRHEQQVKRFNRILDKIIENLPAGIVV------KDISN-NFKYIYRNRE------SYNRG 412

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDER-----KSLQGTLE---LLSDSV-LEYSIIPL 533
           I  T +   ++ D + L  A      D +     K +  T E   +   S+ L+   + +
Sbjct: 413 IKMTEALGKDDFDFYPLETAKRKREQDIKIAETGKEMHWTAEEHDINGKSIYLDKRKMKI 472

Query: 534 PNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +++     +    ++T+  R +R L    E    +D++K++F+ ++S+E+R+PL  I+G
Sbjct: 473 ESSEFSPILLSIEWDITEMERMKRELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVG 532

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+ ++  S   +   ++  Y E ++ ++  LL L+N+ILDL+ ++AGI++   + + L+ 
Sbjct: 533 FSRIIAES---TDADERLNYYEIVAVNNERLLQLINEILDLSKIEAGIVEFTITPVRLHS 589

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST 707
           L  E+  +   +  +    +++I +      V   D+ RL Q+ S ++ NA  F++ G  
Sbjct: 590 LCKEIYDAHVFRCPQG---VELIYESSDEGIVIDGDKNRLFQVVSNLIGNAFKFTTNGK- 645

Query: 708 VILKAARDNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            I       GD+ +F V + GS I  D    +F RFV      Q  G GLGLSI ++ I 
Sbjct: 646 -ISYGYHREGDYVVFHVNDTGSGIAADKLDRIFERFVKVNTFAQ--GTGLGLSICKTIIE 702

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
             GG++S+SS     TT    +P
Sbjct: 703 RMGGNISVSSEIGKGTTFTFILP 725


>gi|238026819|ref|YP_002911050.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
 gi|237876013|gb|ACR28346.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
          Length = 1182

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 3/231 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V A+ AL+     L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q +
Sbjct: 468 VTAQEALSANAARLEQSSRYKSEFLANMSHELRTPLNSSLILARLLQENRTGNLTDEQVR 527

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E I AS++ LL L+NDILDL+ V+AG + +   T+ L+ LL  ++++         + 
Sbjct: 528 YAETIHASNSDLLVLINDILDLSKVEAGQITIEPETVSLDALLQSLRETFEPMAAAKGLA 587

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           + +  + G   + V+D QR+ QI   +LSNA+ F+  G+  +  +A         V+++G
Sbjct: 588 LALERTPGTPATLVSDGQRVTQILRNLLSNALKFTEHGAVTLTISAEGQRMVRLDVRDSG 647

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             I  D  + +F  F     +   Q  G GLGLSI   F  L GG + ++S
Sbjct: 648 IGIAADKLELIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRIGVAS 698


>gi|316934884|ref|YP_004109866.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315602598|gb|ADU45133.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 769

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 127/236 (53%), Gaps = 5/236 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISA 615
           EK  A  +A++ K+ F+ ++S+ELR+PL  IIGF++++ +   G+L S++ Q Y   I  
Sbjct: 526 EKRRA-EEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMT 584

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   LL ++NDILD++ ++AG M+L    + L+  + E  + +A +    ++ ++     
Sbjct: 585 SGHYLLEVINDILDMSKIEAGRMRLEMEPLDLSKTIGESLKVVAGRAEHKHLDLRAEVGD 644

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           ++   VADR+ + QI   +LSNA+ F+     V +++       +  + + G  IP    
Sbjct: 645 QI-PIVADRRAIKQILINLLSNAVKFTPDAGRVTVRSRIAGDSIVLMIADTGIGIPPQSL 703

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +   F  V +       G GLGL+I +S +NLHGG + + S+    T +   +P
Sbjct: 704 RRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGEGTVVMVSLP 759


>gi|270295813|ref|ZP_06202013.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273217|gb|EFA19079.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 978

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 133/248 (53%), Gaps = 8/248 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  R E AL    E  +++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++     +
Sbjct: 593 ITERKRQEEALIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATE---NET 649

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +++  I  ++ +LL LV+DILDL+ ++A  ++ NY  + LN L  +V+ ++  ++ +
Sbjct: 650 ERKEFISIIETNNQLLLQLVSDILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRL-Q 708

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + ++ + +  +     +  RL Q+   +L NA  F+ KG  +     R   +  F VK
Sbjct: 709 TGVALQFVPEVPVCYVQTEHNRLSQVLINLLVNAAKFTEKGEIMFGYKIRGE-ELYFYVK 767

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TT 783
           + G  I  +  K +F RF       Q  G GLGLSI ++ +    G + + S  EG  +T
Sbjct: 768 DTGIGISLENQKKIFERFTKVNTFIQ--GTGLGLSICKNIVTKMKGRIGVESEGEGKGST 825

Query: 784 INCRIPSK 791
               IP K
Sbjct: 826 FWFTIPYK 833


>gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1102

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+ELR+PLT I+G ++ L+    G L +KQ Q +  I  S   LL L+ND+LDL+
Sbjct: 599 FLANMSHELRTPLTAILGLSEALRDEVFGPLTAKQHQKLATIEQSGQHLLELINDVLDLS 658

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +++G M+L+ S   +  L +     +  + H+  I++      ++G    D +R+ Q+ 
Sbjct: 659 KIESGKMELHLSNTDIQGLCDASLAFVRQQAHQKQIKLSAHVPPRIGKVKIDERRMRQLL 718

Query: 692 SKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHR 748
             +LSNA+ F+ +   V ++   D  +    F V + G  I PE++ K +F  FV     
Sbjct: 719 INLLSNAVKFTPESGAVWIEVKGDLEHETLQFIVADTGIGIAPENIGK-LFQPFVQVDSS 777

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             RR  G GLGL++V   I LHGG VS+ S     +     +P K+
Sbjct: 778 FTRRYAGTGLGLALVRQVIELHGGSVSLESELGSGSRFTVSLPWKQ 823


>gi|325293290|ref|YP_004279154.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325061143|gb|ADY64834.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 511

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 134/251 (53%), Gaps = 15/251 (5%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++    LG LN+    
Sbjct: 242 EVANSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVLGPLNNPL-- 299

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y EY   I  S   LL+L+N+ILDL+ ++AG   LN   + + ++  +    I  +    
Sbjct: 300 YKEYSGDIHRSGQHLLDLINEILDLSRIEAGRYDLNEEAVSMLEIAEDCIGMIQLRARAK 359

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSV 723
            IRI    +  L    AD + + Q+   +LSNA+ F+ +G  +++KA      G ++ S+
Sbjct: 360 TIRISQQFESSLPQVWADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYV-SI 418

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
           K+NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S   EG
Sbjct: 419 KDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLREG 478

Query: 781 VTTINCRIPSK 791
              I   +P+K
Sbjct: 479 TEGIAI-LPAK 488


>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1545

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 9/241 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+    E  L E  +    AD  K+ F+ ++S+E+R+P+  ++G  +LL  S    L+
Sbjct: 968  DITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS---DLD 1024

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             KQ  + + I  S   LL ++NDILD + +DAG + L+ +   L + + +V   ++T+  
Sbjct: 1025 PKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAK 1084

Query: 664  ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR--DNGDF 719
            E ++ + V  + +L S F+ D  R+ QI + +L NA+ F+ +G  ++ +   R       
Sbjct: 1085 EKDLELIVRVEPRLESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTKL 1144

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              SV + G  IPE+  K VF +F        RR  G GLGL+I    + L GG + + S+
Sbjct: 1145 TISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGDIGVESA 1204

Query: 778  D 778
            +
Sbjct: 1205 E 1205


>gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1373

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 140/262 (53%), Gaps = 17/262 (6%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   +AE  L +  +A   A+  K+ F+ ++S+ELR+PL  I+GF+ L+      SL 
Sbjct: 876  DITKRKQAEMVLEQAKDAAEAANRAKSEFLANMSHELRTPLNAILGFSQLMNRDP--SLT 933

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            S+Q   +  I++S   LL L+N ILDL+ ++AG M LN ++  L+ LL+ +++ +  K+ 
Sbjct: 934  SEQQNSLNIINSSGEHLLTLINSILDLSKIEAGRMILNENSFDLHHLLDTLEKMLHLKVE 993

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAAR 714
               + +    D  +  F+  D  +L Q+   +L NA+ ++ KG   +        L+ + 
Sbjct: 994  TKGLSLLFERDENVPQFIKTDEGKLRQVLINLLGNAIKYTDKGGVSLKVKQQSYPLEKSP 1053

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +  + +F V + G+ I  +   ++F+ FV +   R  ++G GLGL I   F+ + GG + 
Sbjct: 1054 ETVNLVFEVTDTGTGISSEEISTIFDAFVQTTTGRKSQQGTGLGLPISRKFVQMMGGDIR 1113

Query: 774  ISSSDEGVTT---INCR-IPSK 791
             + S+ G  T    N R IP+K
Sbjct: 1114 -AKSELGTGTSFEFNLRVIPTK 1134


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
          Length = 1329

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 13/232 (5%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R +TE+    ++ +++K+ FV  VS+ELR+PLT+I G   +L TS L S  S+Q + +  
Sbjct: 804  RDITER----KQVEKMKDEFVSVVSHELRTPLTSIHGSLGML-TSGLLSTTSEQGKRLLQ 858

Query: 613  ISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATK--MHENN 666
            I+  ST  L+ L+NDILD+  +++G +K+      L DL+N    + Q++A K  +  + 
Sbjct: 859  IATDSTERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAGVSLSI 918

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
                  S+       AD  R++Q  + + SNA+ FS  GSTV L         + +V++ 
Sbjct: 919  QNSNSSSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVTVQDT 978

Query: 727  GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  IPED  +S+F RF  V ++      G GLGL+I +S +  HGG + + S
Sbjct: 979  GRGIPEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKS 1030


>gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 989

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 128/249 (51%), Gaps = 9/249 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTE----KNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + QT    V + D + A +AL +      EA   A+  K+ F+ ++S+ELR+PL  I+G+
Sbjct: 503 SGQTSHVIVIIQD-ISARKALEDTVRVAKEAAEAANRAKDQFLANISHELRTPLNGILGY 561

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             +L+  +   L+++Q   V  I  S   LL L+NDILD A + AG ++L    + L   
Sbjct: 562 AQMLQ--RDARLDARQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGF 619

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L  + + +A +  +  + +  ++   L + V  D +RL Q+   +L+NA+ F+ +G   +
Sbjct: 620 LETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVKFTDRGEVTL 679

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLH 768
             +    G   F V++ G  +  D  +++F  F  +  H  +  G GLGL+I    + + 
Sbjct: 680 SVSRGAAGRVRFEVRDTGIGVSADRLEAIFQPFEQAGDHTRRSGGAGLGLAISRQLVRMM 739

Query: 769 GGHVSISSS 777
           GG + ++SS
Sbjct: 740 GGEIEVTSS 748


>gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 810

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 9/233 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L++  EA   A + K+ F+ +VS+E+R+P+  ++G   LL  +    L +KQ +Y
Sbjct: 284 RAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLET---DLQAKQREY 340

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I +S  +L+ ++ND+LD + +++G +K+         ++ E+      +  +  + +
Sbjct: 341 AEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQKGVFL 400

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFS--VKN 725
           +    G++    + DR RL Q+   +L NA+ F+ KG+ T+ ++ + + G    S  V +
Sbjct: 401 EYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKGTITLTVRGSVEGGVCRLSCIVSD 460

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  IP+DM   +F+ F        RR  G GLGL+IV   + L GG VS  S
Sbjct: 461 TGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDS 513


>gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116]
          Length = 1054

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 11/235 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E A   K++A+ KA + K+SF+ ++S+E+R+PL  +IG +++L  +   SL + Q  YV+
Sbjct: 380 EDAEQAKDDAI-KASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---SLTATQKDYVD 435

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS +LL+L+NDILD + +++G++ ++  +  + + + ++   ++ K  E  I +KV
Sbjct: 436 TIETSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGINLKV 495

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNN 726
            IS       + D  RL Q+    +SNA+ F+ KG    S      +  N    FSV+++
Sbjct: 496 SISRNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGSVHLSVTTHGVSGANAVMEFSVQDS 555

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           G  I E   K++F  F    +   R+  G GLGL+I    + L GG + + S  E
Sbjct: 556 GIGIDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGKIQLESEKE 610


>gi|212710083|ref|ZP_03318211.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
 gi|212687290|gb|EEB46818.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
          Length = 1042

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 127/242 (52%), Gaps = 7/242 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F ++T     E+ L        +A++ K++F+  +S+E+R+PL  IIG  +LL+ + 
Sbjct: 446 LCAFTDITIQAETEKQLNHAKRLAEEANQAKSNFLATMSHEIRTPLYGIIGTLELLENT- 504

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+ KQ  +++ +S +S +L++L+ DILD++ ++A  + + + +  L DL+    Q  
Sbjct: 505 --ALSPKQKHFIDRMSTTSQLLMHLIGDILDISKIEANQIHIQHISFDLLDLIQHTVQLY 562

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                +  + +  I D  + +  + D  RL QIF  +LSNA+ F+  G   +      N 
Sbjct: 563 QGLAQQKKLLLFAIIDPNIYAVRIGDAARLQQIFGNLLSNAIKFTHNGKVTVELRNGTNN 622

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           + I  V + G  I ++  + +F  F   AH GQ    G GLGL I    + L GG +S++
Sbjct: 623 NIILFVNDTGVGISQEQQEKLFEPFY-QAHSGQHTYGGTGLGLFICAELVKLMGGEISVT 681

Query: 776 SS 777
           S+
Sbjct: 682 SN 683


>gi|323704003|ref|ZP_08115626.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531032|gb|EGB20948.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 498

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +K   LR+ DE +  FV  VS+ELR+PLT I G+T+ L   ++     K+ +Y+  
Sbjct: 249 KELNDKINLLRQIDETRRDFVASVSHELRTPLTIIQGYTEAL-LDEVVETPEKKEEYLHS 307

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L  LVND+LDL  ++ G +KLN   + L DL + V Q +     E  + +K+ 
Sbjct: 308 ILEETLRLRRLVNDLLDLRQIETGQVKLNKQAVDLADLFSAVLQKMEGLFREKQVDLKLA 367

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              K      D  R+ Q+   ++ NA+  +  G  +++K    + +    V ++G  IP+
Sbjct: 368 LPEKPVVAEVDPDRIGQVLINLVDNALRATPGGGRILVKLMVSDNEITVKVTDSGPGIPK 427

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  K ++++F  +  +      G GLGL+IV+  + +HGG +++ S     TT +  +P
Sbjct: 428 EEQKLIWHKFYKIDKSRSRSGGGTGLGLAIVKQLVEIHGGRITLDSQPGQGTTFSFTLP 486


>gi|146281507|ref|YP_001171660.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
 gi|145569712|gb|ABP78818.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
          Length = 1239

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 148/278 (53%), Gaps = 17/278 (6%)

Query: 526 LEYSIIPLPNAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + PL +    L     ++++    AER L E+ + L  A+  K+ F+ ++S+ELR+
Sbjct: 558 VEIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRT 617

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL +I+  +D L+ +  G+LN KQ ++ + I  +   LL L+ND+LDLA +++G M+L  
Sbjct: 618 PLNSILILSDQLRQNGAGNLNDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKL 677

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
             + L DLL +++ S+ +   +  + + +  D  +  +  +DR RL QI + +L+NA+ F
Sbjct: 678 EPLNLRDLLRDLEASLGSMAAQKGLSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKF 737

Query: 702 SSKG----STVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQR 751
           + KG    +  +L A +D    +   V+++G  I +D  + +F  F       + H G  
Sbjct: 738 TEKGQVELTASLLPADQDGRQMLQLQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYG-- 795

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL+I    + + GG V ++S      T    +P
Sbjct: 796 -GTGLGLAITRQLVEVLGGQVMVNSELGQGATFTVLLP 832


>gi|222148514|ref|YP_002549471.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735500|gb|ACM36463.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 511

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 142/265 (53%), Gaps = 15/265 (5%)

Query: 539 MLTFVNVTDSVRAER--ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL 593
           +++F +  D + AE   A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF+++
Sbjct: 227 LISFQSEKDDLIAELEVAKSMSDEARRRAEEANMAKSRFLASMSHELRTPLNAILGFSEV 286

Query: 594 LKTSKLGSLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +    LG LN+    Y EY   I  S   LLNL+N+ILDL+ ++AG   L+  +I L ++
Sbjct: 287 MAQEVLGPLNNPL--YREYSGDIHRSGQHLLNLINEILDLSRIEAGKYDLSEESISLLEV 344

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +    +  +    +I+I    +  L +  AD + L Q+   +LSNA+ F+  G  +++
Sbjct: 345 AEDCVGMVQLRAKAKDIKISQQYEINLPALWADEKALRQVVLNLLSNAVKFTPPGGEILV 404

Query: 711 KAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
           K       G ++ S+K+NG  I E+    V + F   S A +   +G GLGL IV++ + 
Sbjct: 405 KVGWTVGGGQYV-SIKDNGPGIAEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILA 463

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG   + S     T +   +P+K
Sbjct: 464 KHGGEFKLKSKLREGTEVIAILPAK 488


>gi|89097844|ref|ZP_01170731.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087346|gb|EAR66460.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 463

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 10/243 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  RA  + + +++K DE K  F+  +S+ELR+P++ I G++D +    L  +  K  +Y
Sbjct: 224 RLARAFNQMSSSIQKEDERKKEFLADISHELRTPISYIKGYSDAI----LKGIADKDDKY 279

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I+  S  +  LV D+LDL+ +D    +L    + L  ++ +        + E  + +
Sbjct: 280 LHLINRESVRMERLVGDLLDLSRLDTDEYQLVRMPLPLAQVIEDSLVRYTPALREKRVEL 339

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGS 728
           + + D  +   + D  R+ QI   I+ N++ ++ KG   + LKA+  N D I ++ + GS
Sbjct: 340 RTMLDPDI-IIMGDEGRIGQIVQNIMDNSIRYTGKGYIEITLKAS--NRDCILTIIDTGS 396

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +  +S+  RF  V+ A      G GLGL+I E  I LH G +SI+SS    TT+  
Sbjct: 397 GIPPEDLESIKQRFYRVNKARTRDDGGTGLGLAIAEKLIQLHHGSISIASSPGEGTTVTI 456

Query: 787 RIP 789
           ++P
Sbjct: 457 KLP 459


>gi|330826610|ref|YP_004389913.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
 gi|329311982|gb|AEB86397.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
          Length = 829

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 131/237 (55%), Gaps = 18/237 (7%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY------ISAS 616
           ++A   K+ FV ++S+ELR+PL +I+GF      S+LG + ++Q  Y +Y      I A+
Sbjct: 590 QEASRTKSEFVANISHELRTPLQSILGF------SELGMVRARQ--YEKYAAMFQDIHAA 641

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
              +L LVND+LD++ +++ +    ++   + DLL +V   +   +    + +++ +   
Sbjct: 642 GQRMLGLVNDLLDISKIESTVGAFRFARNDVRDLLEDVAAELQMLLERKGLTLRLDLGRV 701

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDM 734
            L S V D  R  Q+   +LSNA+ FS +G T+ + A+  D    +  V+++G  IP   
Sbjct: 702 PLVSKV-DSTRFAQVARNVLSNAVKFSPEGGTIEMSASTPDESTILVQVRDHGPGIPPAE 760

Query: 735 CKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++VF+ FV S+  R +  G GLGL+I    +  HGGH+  +++ +G T  +  +P+
Sbjct: 761 LEAVFDAFVQSSKTRDESGGTGLGLAICRKIVTAHGGHIHATNAPDGGTIFHIVLPT 817


>gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 929

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 4/236 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T    A RAL    EA   A   K+ F+  VS+ELR+PL  I+G+T +L+   L  L
Sbjct: 447 IDITQQREAARALQAAKEAADAASGAKSQFLASVSHELRTPLNGILGYTQILRRDPL--L 504

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ + +  I  S+  LL L+ND+LDL+ ++AG ++L+     L +     ++  A + 
Sbjct: 505 GEKQREGIRVIHESAEHLLVLINDVLDLSKIEAGRIELHPGDFALAEFAAGAERVFAPRA 564

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            E N+ ++      L  FV  D  RL Q+   +L NA+ F+++G  V   ++   G   F
Sbjct: 565 REKNLLLETALAPDLPEFVRGDEARLRQVVFNLLGNAVKFTAQGGVVFSISSSAGGGLRF 624

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           SV + G  I       +F  F       G   G GLGL+I  S +   GG + + S
Sbjct: 625 SVSDTGRGIAAADLSRIFEPFTQVGESTGAATGTGLGLAISRSLVERMGGRLQVES 680


>gi|150402298|ref|YP_001329592.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033328|gb|ABR65441.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 614

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 131/233 (56%), Gaps = 6/233 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L++ D++K+  +  VS+ELR+PLT+I+G+  LLK    G LN KQ ++V  IS +S  
Sbjct: 382 DELKEVDDLKSELISIVSHELRTPLTSILGYIQLLKDETAGKLNEKQKEFVSVISENSER 441

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  + +++ DL +VD  ++   ++ +   ++ N V++ I++  H  + R  ++ +    S
Sbjct: 442 LKRITDNMSDLVSVDDDVLDGEFNKL---NIKNAVEEIISSLQHFADSRNIILLEDVDDS 498

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           ++  D+ ++ Q+ + ++ NA+ FS K + V +    DNG+    + + G  IP++    +
Sbjct: 499 YIKGDKSKIHQVLANLIENAVKFSKKQTKVTVTGFEDNGNIHLEITDQGPGIPKEHLDKI 558

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  + ++ + +  G GLGL++ +  +  HGG + + S     T ++   P
Sbjct: 559 FDRFYQIDSSSKREIGGSGLGLAVCKKIVESHGGSIWVESKIGKGTIVHVLFP 611


>gi|115373794|ref|ZP_01461087.1| periplasmic sensor hybrid histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310817567|ref|YP_003949925.1| putative response regulator/receiver [Stigmatella aurantiaca
           DW4/3-1]
 gi|115369193|gb|EAU68135.1| periplasmic sensor hybrid histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309390639|gb|ADO68098.1| putative response regulator/receiver [Stigmatella aurantiaca
           DW4/3-1]
          Length = 682

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 9/242 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL EK E+L++A E+K   V +VS+E R+PL +I+G + +L     G L S+Q + V+++
Sbjct: 165 ALDEKAESLQRAAEVKGRVVANVSHEFRTPLHSILGLSKVLLNPLNGPLTSEQEKQVQFV 224

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVI 672
             S+  L +LVND+LDL+ ++AG   L  +  V  + ++ ++  +   +  E++  I   
Sbjct: 225 RTSAEALYDLVNDLLDLSKMEAGKAVLRPNRFVAGEFISALRGMMRPLLPPESSTEILFP 284

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSI 730
                     D  +L Q+   ++SNA+ F+ KGS  I   +  RD   FI  VK+ G  I
Sbjct: 285 EIPSTVELETDEAKLSQVLRNLVSNAVKFTEKGSIAINVAQGPRDTVSFI--VKDTGIGI 342

Query: 731 PEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           P +  + +F  F+   +  H+ + +G GLGL +      + GG +++ S +   +T    
Sbjct: 343 PPEYHERIFEEFIQVETPLHK-KVKGTGLGLPLARRLTEMLGGTLTVQSVEGQGSTFTVT 401

Query: 788 IP 789
           IP
Sbjct: 402 IP 403


>gi|327479684|gb|AEA82994.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1239

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 147/278 (52%), Gaps = 17/278 (6%)

Query: 526 LEYSIIPLPNAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + PL +    L     ++++    AER L E+ + L  A+  K+ F+ ++S+ELR+
Sbjct: 558 VEIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRT 617

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL +I+  +D L+ +  G+LN KQ ++ + I  +   LL L+ND+LDLA +++G M+L  
Sbjct: 618 PLNSILILSDQLRQNGAGNLNDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKL 677

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
             + L DLL +++ S+ +   +  + + +  D  +  +  +DR RL QI + +L+NA+ F
Sbjct: 678 EPLNLRDLLRDLEASLGSMAAQKGLSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKF 737

Query: 702 SSKGS----TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQR 751
           + KG       +L A +D    +   V+++G  I +D  + +F  F       + H G  
Sbjct: 738 TEKGQVELMASLLPADQDGRQMVQLQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYG-- 795

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL+I    + + GG V ++S      T    +P
Sbjct: 796 -GTGLGLAITRQLVEVLGGQVMVNSELGQGATFTVLLP 832


>gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2028

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 146/297 (49%), Gaps = 18/297 (6%)

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV--------TDSVRAERALTEKN--- 559
            R   + T++ L+    EY + P  +A+ +L  V            +VRAERA  E     
Sbjct: 722  RAGEEATIQGLNSGADEYLVKPF-SAKELLARVTALLTVSQLRQAAVRAERAHVEDTLRF 780

Query: 560  -EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASS 617
             E  R+A  ++   +  VS++LRSPLT I    +LL+     G   ++  +  + I  S+
Sbjct: 781  LEESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSA 840

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              +  L++D+LDLA++DAG + +      +++L+ + ++       E  +++    +  L
Sbjct: 841  DRMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGL 900

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMC 735
                 D++R+LQ    +LSNA+ F+  G +++L+A  + G  D   SV + G  IP    
Sbjct: 901  -ILSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQ 959

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F+R+       +R G GLGLSI +  +  HGG + +  +    +T +  +PS +
Sbjct: 960  PHIFDRYWHGVQ-NKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLPSGQ 1015



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 124/245 (50%), Gaps = 8/245 (3%)

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            S RA     ++ E L   D+ K +F  +VS+E R+PLT I+G  +   +    +L  ++ 
Sbjct: 1354 SARAYEQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEK- 1412

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
              ++ +  ++  L  +VN +LD + ++AG  + +Y  + L+ +   +  +  + +    +
Sbjct: 1413 --LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGL 1470

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNN 726
            R+ V           D +   ++   +LSNA+ ++ +G   V+L+   D+   + +V++ 
Sbjct: 1471 RLVVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYEGEIRVVLRWQDDHA--VLTVQDT 1528

Query: 727  GSSIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IPE+    VF RF    A +G+   G G+GL++V+  + LHGG +S+ S+    T  
Sbjct: 1529 GVGIPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAF 1588

Query: 785  NCRIP 789
              R+P
Sbjct: 1589 TLRLP 1593



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 7/238 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615
           ++ EAL + D  K +F  +VS+ELR+PL  ++G   D L+ ++   L  KQ +  E +  
Sbjct: 357 KRAEALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEY-PLPPKQRERQEVVHR 415

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +   L  LVN +LD A ++AG  + ++    L+ L  E+  +  + M    + + V    
Sbjct: 416 NGLRLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPV 475

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734
              +   D     ++   +LSNA+ F+ +G   I  A R  GD +  +V++ G+ +PE  
Sbjct: 476 LPEAVYVDPAMWEKVVLNLLSNALKFTLQGEVRI--ALRWLGDRVELTVQDTGTGMPEAE 533

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F RF  V  A      G G+GL++V+  + LHGG V++ S     +T    +P+
Sbjct: 534 LPRIFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLPA 591



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 12/291 (4%)

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE---KNEALRKADE 567
            R   + T+E L     +Y + P    + ++      D  R  R +     + + LR++  
Sbjct: 1738 RAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDMARVRREVVRNEIEKKVLRESVR 1797

Query: 568  IKNSFVQHVSYELRSPLTNI-IGFTDLLKT--SKLGSLNSKQSQYVEYISASSTI--LLN 622
            +++ F+  VS+ELR+P++ + + F  L+++   + G   S ++  V+  +    +  L  
Sbjct: 1798 VRDEFLNLVSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVKAQTTQKQLHRLAR 1857

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LV  +LD +    G +KL    + L+ + + V +   +K       + + +   +  +  
Sbjct: 1858 LVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVLTLNAPSPVMGYC- 1916

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNR 741
            DR RL Q+   +L NA+ F + G  + +   RD+   + +V ++G+ I PED  + +F R
Sbjct: 1917 DRARLHQLLEGLLDNALKFGA-GKPIEVAVWRDSDHALLTVMDHGAGIEPEDE-ERIFGR 1974

Query: 742  FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            F          G GLGL I       H G + +  ++ G  T    +P  E
Sbjct: 1975 FERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALPLNE 2025


>gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1300

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 12/247 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L F  + +  RAE A+     A   A   K+ F+ ++S+E+R+P+  I+G   LL+ +
Sbjct: 462 AVLVFHEIAERKRAEAAMQRARLAAEAASRAKSEFLANMSHEIRTPMNAILGLIHLLQQT 521

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L     +Q+ YV+ +  S+  LL ++NDILD + V+AG ++L  +   L+DLL  +   
Sbjct: 522 EL---TGRQADYVQKVRVSAQSLLGILNDILDFSKVEAGKLELERADFRLDDLLQTLAVI 578

Query: 658 IATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKA 712
           + +   E +I +   V  D  L   V D  RL QI   +  NA+ F+  G  V+   L+ 
Sbjct: 579 VGSAAQEKDIDVLFSVAPDVPL-ELVGDPLRLQQILINLAGNAIKFTETGEVVVSVRLRT 637

Query: 713 ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
             D+G  + FSV++ G  I  +  + +F  F        RR  G GLGL+I    + L  
Sbjct: 638 LADDGAVLDFSVRDTGIGIAPEQRERLFEAFSQGDSSTTRRFGGTGLGLAICARLVRLMN 697

Query: 770 GHVSISS 776
           G + + S
Sbjct: 698 GAMDVES 704


>gi|119488833|ref|ZP_01621795.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119454994|gb|EAW36136.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1205

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 125/238 (52%), Gaps = 15/238 (6%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST-ILLNLV 624
            + +KN F+  VS+ELR+PLT I G  +LL T  L +  S + Q+V  I+A ST  L+ LV
Sbjct: 963  ERMKNEFISVVSHELRTPLTAIHGALNLLSTG-LVAPESPRGQHVIKIAAESTERLVRLV 1021

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            NDIL+L  ++ G +KL    +    LL   +  +    +   I+++++       F AD 
Sbjct: 1022 NDILELERLECGRIKLVKHCVNAAQLLRVAQDQMQVMANRTGIKLEILPQDI--EFEADG 1079

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---------IFSVKNNGSSIPEDMC 735
             R++Q+ + ++SNA+ FS  GST+ L    +   F         +F V++ G  IP +  
Sbjct: 1080 DRMIQVLTNLISNAIKFSDSGSTIQLSVEAEWRTFGGETPIASVLFCVRDQGRGIPLEKM 1139

Query: 736  KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +S+F RF  V  +   Q+ G GLGL+I  S +  HGG + + S  +  +     IP K
Sbjct: 1140 ESIFERFQQVDASDSRQKGGTGLGLAICRSIVEQHGGIIWVESVLDQESCFYFSIPVK 1197


>gi|224535633|ref|ZP_03676172.1| hypothetical protein BACCELL_00497 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522754|gb|EEF91859.1| hypothetical protein BACCELL_00497 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 224

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K++F+ ++S+E+R+PL +I+GF+DLLK  +  S   +  Q+V+ I+ + T+LL L+NDI
Sbjct: 2   LKSAFLANMSHEIRTPLNSIVGFSDLLKDIEAFS-PEEVKQFVDTINTNCTLLLALINDI 60

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ +++G M   ++   L  ++ ++  S    M      +  + +G+  S V D  RL
Sbjct: 61  LDLSRIESGSMDFRFAGYNLTFVMQQIYDSQRLSMPRGVELVMKLPEGEGKSIVTDSVRL 120

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+ +  ++NA  F+++GS        + G  +F V++ GS I E+  + +F RF     
Sbjct: 121 KQVINNFINNAKKFTTQGSITFGFQTEEPGYTVFFVEDTGSGISEENQRRIFERFYKVDS 180

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGLSI ++ +    G +++SS     T    R+P
Sbjct: 181 FTQ--GAGLGLSICQTIVERFRGEINVSSELGKGTRFTVRVP 220


>gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 916

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 128/249 (51%), Gaps = 8/249 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+ AL E+   L  + + K+ F+ ++S+ELR+PL +++    +L  +K G+L+ KQ +Y
Sbjct: 489 KAKTALEEQASHLALSSQYKSEFLSNMSHELRTPLNSLLILARILVENKDGNLSPKQVEY 548

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I +S   LLNL+NDI DLA ++AG + +    I L +L+  +++       +  +  
Sbjct: 549 AETILSSGNDLLNLINDIFDLAKIEAGKLIVKPEQISLTELIYTLERQFQPIARQKLLDF 608

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSV 723
            +  D  +  +F  D+ RL+QI   +LSNA  F+++G   +      K +      +FSV
Sbjct: 609 TIQLDNDIPKTFFTDKNRLMQILKNLLSNAFKFTNEGCVNLHVQRATKISEKGTQIVFSV 668

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I +D    +F  F        R+  G GLGLSI      L GG + + S     
Sbjct: 669 SDTGIGIAKDKQALIFEAFQQGDGTTSRKFGGTGLGLSICRELAGLLGGFIELQSIKGKG 728

Query: 782 TTINCRIPS 790
           +T +  IP+
Sbjct: 729 STFSVYIPT 737


>gi|315920124|ref|ZP_07916364.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693999|gb|EFS30834.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 936

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 136/239 (56%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T  +   
Sbjct: 686 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEDV--- 742

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 743 -AERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKA 801

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E+   ++++ D  L     ++DR R+ Q+ S  ++NAM F+S+GS  +    ++ G+  
Sbjct: 802 KED---VELVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYELKE-GELE 857

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F VK+ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 858 FYVKDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 911


>gi|255691148|ref|ZP_05414823.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623241|gb|EEX46112.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 934

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 133/237 (56%), Gaps = 15/237 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T     E  L    +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T+ +   
Sbjct: 686 DITKLKETEAELIHARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETADI--- 742

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y++ +  ++ +LL L++DILDL+ ++AG  + ++  + +N L  ++ +S+  K 
Sbjct: 743 -EERREYMKIVRENNDLLLQLISDILDLSKIEAGTFEFSHGDVDVNLLCEDLVRSMQMKT 801

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E N+++    +  +    +DR R+ Q+ S  ++NA+ F+S+G+  +    +D G   F 
Sbjct: 802 KE-NVKLVFEPNFSICHITSDRNRIYQVISNFVNNAIKFTSEGNIRVGYVLKDEG-LEFY 859

Query: 723 VKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  I +     +F RFV   S  H     G GLGLSI +S +   GGH+ + S
Sbjct: 860 VQDTGIGIEKKQLPHIFERFVKLDSFVH-----GTGLGLSICQSIVEQLGGHIGVDS 911


>gi|241762807|ref|ZP_04760871.1| histidine kinase [Acidovorax delafieldii 2AN]
 gi|241368226|gb|EER62418.1| histidine kinase [Acidovorax delafieldii 2AN]
          Length = 844

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 135/265 (50%), Gaps = 27/265 (10%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EKN+ L++  ++K+ F+ ++S+ELR+PL  IIGF+++LK   +G +  KQ ++V  I 
Sbjct: 308 LAEKNQQLQEVSQLKSDFLANMSHELRTPLNAIIGFSEVLKDGLVGEITPKQHEFVSDIF 367

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   LL+L+NDILDL+ ++AG M L+  T  ++ +L      +  K   + I ++    
Sbjct: 368 ASGQHLLSLINDILDLSKIEAGKMTLDLDTQDVDAMLRNSLSIVKEKASAHAILLQFDVA 427

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------------------ 716
             LG  + D ++  QI   +LSNA+ FS+    V L+A +                    
Sbjct: 428 EPLGMALLDARKTKQIVFNLLSNAVKFSANNGKVTLQARKVQRAAIETWATQQPTSLRMP 487

Query: 717 ------GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
                  DF+  +V + G  I       +F  F  + ++      G GLGL++V   + L
Sbjct: 488 LPPSAFADFLEIAVVDTGLGISAADVPRLFQAFSQLDSSLSRVSEGTGLGLALVLKLVQL 547

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           HGG V+++S+    +T    +P ++
Sbjct: 548 HGGTVALASTPGHGSTFTVWLPWRK 572


>gi|46201797|ref|ZP_00208250.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 641

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 211/498 (42%), Gaps = 41/498 (8%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKL----- 365
           + ++   + +FD    L   N+ F +L +I  +F   N       EF L +A +      
Sbjct: 161 VQHMPQGVCLFDNALNLVVANKIFFDLTQIPDSF---NVKGINFYEFMLYNAQRGEYGPG 217

Query: 366 -PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
            PE+L  +  +     +    E H      P+G  + V     P  G I  F ++T +  
Sbjct: 218 DPEELARQRQE-----IAARMEPHAFDRTRPDGTVIEVRGNPIPGRGFISTFTDITERAK 272

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRNI 483
            E        +    ++     V +   DG I  L+  A   L   ++  +  GT+I N 
Sbjct: 273 AEEALREAATMARAMLEAPGLLVLLIRMDGTIVDLNEEAAVGLGSHKDAMI--GTNIFNA 330

Query: 484 AAT--CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---- 537
             T    R +  +    L A  I  F+DER               E ++ P P  Q    
Sbjct: 331 MPTKVAERRFALAQQAILEARAIY-FEDERDG----------RWFETTMTPYPMDQDGIP 379

Query: 538 -TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             M+   +VT    AE+ L E     + A+  K  F+  +S+ELR+PL  I+GF++++  
Sbjct: 380 RVMVIAHDVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIISR 439

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G +  +   Y + I+A+   LL ++NDILD++ ++ G   L    +  ++L     +
Sbjct: 440 EMFGPVGERYRTYGQDINAAGQHLLAMINDILDISRIEIGAFTLCIEPVDPHELAYSCLR 499

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARD 715
            + ++    N+ +       L   + D +R  QI   +L NA+ F+  G  V L+   RD
Sbjct: 500 LVGSRAEAGNVDLSEDMPESLPHLMIDSRRTKQILINLLGNAVKFTPPGGKVTLRGETRD 559

Query: 716 NGDFIFSVKNNGSSIPE-DMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +G   F V + G  + E DM    S F +  +   R +  G GLGL + +S   LHGG +
Sbjct: 560 SGGIAFHVIDTGIGMSEADMAVALSPFGQVDTGLDR-RFEGAGLGLPLAKSLAELHGGSL 618

Query: 773 SISSSDEGVTTINCRIPS 790
            I+S     TT++   P+
Sbjct: 619 EITSIPGKGTTVSVYFPA 636



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 108/286 (37%), Gaps = 40/286 (13%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           +T    +L +L   I++F  +  L   NR F +L E    FL  + + ++++ F     +
Sbjct: 1   MTMMQGVLDHLDQGISVFSADLRLVLWNRRFADLHEFPDGFLTHDLAFEDIIRFNAQRGE 60

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV--Q 422
                + +    +     +    H+     PNG  L +I    P GG +  + ++TV  Q
Sbjct: 61  YGGHYDVEDMVRHRVDSAREFRPHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQ 120

Query: 423 V-----------------------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           +                       D E ++    +    T+ H+ +GV +F     + ++
Sbjct: 121 IAENLRGSNDRLDQMVERRTRALQDSEERHRAYGEFLEATVQHMPQGVCLFDNALNLVVA 180

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRY--YNESDGWDL------FAAIITSFDDER 511
           N  F  L +  ++    G +        ++   Y   D  +L       AA +     +R
Sbjct: 181 NKIFFDLTQIPDSFNVKGINFYEFMLYNAQRGEYGPGDPEELARQRQEIAARMEPHAFDR 240

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
               GT       V+E    P+P    + TF ++T+  +AE AL E
Sbjct: 241 TRPDGT-------VIEVRGNPIPGRGFISTFTDITERAKAEEALRE 279


>gi|161619546|ref|YP_001593433.1| PAS domain-containing protein [Brucella canis ATCC 23365]
 gi|254704851|ref|ZP_05166679.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|260565909|ref|ZP_05836379.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261755546|ref|ZP_05999255.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 3 str. 686]
 gi|223635609|sp|A9M715|PDHS_BRUC2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|161336357|gb|ABX62662.1| PAS domain S-box [Brucella canis ATCC 23365]
 gi|260155427|gb|EEW90507.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261745299|gb|EEY33225.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 3 str. 686]
          Length = 1035

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 175/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNYVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR---------RGVGLGLSIVESFI 765
            NGD +  V++ G  + +   +     F   NA  G++          G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|253566766|ref|ZP_04844218.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265763189|ref|ZP_06091757.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|251944329|gb|EES84818.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263255797|gb|EEZ27143.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 639

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 9/237 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R++ AL E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L +   GS    Q
Sbjct: 399 DLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GSSEEDQ 456

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S+     E+ 
Sbjct: 457 RNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMSRRESG 516

Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723
            R   + + K  SFV   D QRL Q+   +L+NA  F+  G+ T+  +  ++    +F+V
Sbjct: 517 NRF--VFETKTDSFVLQTDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 574

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I    EG
Sbjct: 575 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWIDPDYEG 629


>gi|167645203|ref|YP_001682866.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
 gi|167347633|gb|ABZ70368.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
          Length = 579

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+ELR+PL  I+GF+D+++    G L  +  +Y E I  S   LL+L+ND+LD++
Sbjct: 326 FLANMSHELRTPLNAIMGFSDIMRARMFGPLTDRYGEYAELIHESGRHLLDLINDVLDMS 385

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++A   +L        + +    + +  +     ++++ +         ADR+ L QI 
Sbjct: 386 KIEAERFELQRGEFDAREAVTAAMRLLRVQADAAGVQLRGVLPPTDLEVDADRRALKQIV 445

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQ 750
             ++SNA+ F+ +G  V + A   +G+F   V + G  I PED+ +    R    A    
Sbjct: 446 LNLVSNALKFTPRGGQVTVTADGHDGEFELVVADTGVGISPEDLER--LGRPYEQAGGVD 503

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +R  G GLGLS+V +F  LHGG + I S     T+++ R+P
Sbjct: 504 QRAKGTGLGLSLVRAFAKLHGGEMHIESRMGAGTSVSVRMP 544


>gi|162450927|ref|YP_001613294.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161161509|emb|CAN92814.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 885

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 142/283 (50%), Gaps = 26/283 (9%)

Query: 518 LELLSDSVLEYSIIPLPNAQTML-----------TFVNVTDSVRAE---RALTEKNEALR 563
           LE L  SVL  S+    NAQ +            +F ++T   RAE   + L    E+ R
Sbjct: 442 LERLDGSVLWLSV----NAQPLRGEDGSVAGVVSSFFDITARKRAEEERQGLLAAAESAR 497

Query: 564 K----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +    A  +K+ F+  +S+ELR+PLT ++G+  +L+T KL     ++ + +E +  ++  
Sbjct: 498 QEAEAASHLKDEFLATMSHELRTPLTAVLGWVRMLRTGKL--PEERRDKALETVERNAQA 555

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
              L++D+LD++ + AG ++L+   I L  +++   + +        +R+  + +  +G+
Sbjct: 556 QAQLIDDLLDISRIMAGKLRLDVHRIELVPVIDAALEVVRPAADAKGVRLLSLLEPGVGA 615

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  RL Q+   +L+NA+ F+ +G  V ++  R +G    +V + G  I       VF
Sbjct: 616 VAGDAGRLQQVVWNLLNNAVKFTPRGGVVRIRLDRADGSAEITVSDTGQGIEPAFLPYVF 675

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            +F        RR  G+GLGL+IV+S + +HGG     S  EG
Sbjct: 676 EQFRQAESGTTRRHGGLGLGLTIVKSLVEMHGGTAHALSDGEG 718


>gi|149183788|ref|ZP_01862190.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
 gi|148848506|gb|EDL62754.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
          Length = 941

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD++KN  V  VS+ELR+PL +++G+T+LL   +L     +Q +Y+  I   +  L  L
Sbjct: 581 EADQMKNELVSTVSHELRTPLASVLGYTELLINRELKP--ERQKKYLNTIYQEANRLTVL 638

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSFV 681
           +ND LD+  +++G          L  LL EV + I   T +H+    I+ +SD      +
Sbjct: 639 INDFLDVQRMESGKQTYEKKYESLTPLLKEVIEGIKINTSIHD----IQFVSDADDDMVL 694

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR +LLQ+F  ++ NA+ +S  G  + +K      +   S+ + G  +PE+   ++F +
Sbjct: 695 GDRDKLLQVFQNLIQNAVKYSPAGGNITIKLHSAPKELHVSIIDEGLGVPEEAMPNLFTK 754

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V N+ R +  G GLGL+I +  I  H G + +SS     +T    +P
Sbjct: 755 FFRVDNSDRRKIGGTGLGLAIAKEIIKAHEGDIVLSSKLGQGSTFTVILP 804


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
            29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
            [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R +TE+ +  R  DE    FV  VS+ELR+PLT+I G   +L +  L + + +  + +E 
Sbjct: 1112 RDITERKQIERMKDE----FVSVVSHELRTPLTSIHGSLGMLASGLLPADSEQGRRLLEI 1167

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
             + S+  L+ L+NDILD+  +++G +K+   +  L DL+      +    ++  +++ V 
Sbjct: 1168 ATDSTERLVRLINDILDIERIESGRVKMERESCNLTDLIESAVSIMRPLANKAGVKLSV- 1226

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            S   +  +V D  R++Q  + +LSNA+ FS+   TV L A +   + + +VK+NG  IP 
Sbjct: 1227 SHPSIQLWV-DPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQQYGDELLVTVKDNGRGIPA 1285

Query: 733  DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            D   S+F RF  V ++      G GLGL+I +S +  HGG +
Sbjct: 1286 DKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIVQQHGGRI 1327


>gi|90423355|ref|YP_531725.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90105369|gb|ABD87406.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 775

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 180/402 (44%), Gaps = 43/402 (10%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           TV+ DL  +         + I+ + E   ++  + R+ L N  F+ L K  ++ ++PGT 
Sbjct: 371 TVEADLRLR---------DAIETIPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTS 421

Query: 480 IRNIAATCS---------RYYNESDGWDLFAAIITSFD----DERKSLQGTLELLS---- 522
              +    +            +   G   F A + +       ER++  G    +     
Sbjct: 422 YETVVEVGTMPEARTRLPEAGHHPPGARTFEAQLDNGKWLHISERRTKDGGYVAVGTDIT 481

Query: 523 ------------DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                       D  L  +++ L  +Q  L    V     A++   EKN A   A++ K+
Sbjct: 482 RIKEHEQKLVENDLRLRATVVDLKRSQATLERQAVELVDLAQKYSEEKNRA-EDANQTKS 540

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILD 629
            F+ ++S+ELR+PL  IIGF++++ +   GSL S++ Q Y   I  S   LL ++NDILD
Sbjct: 541 KFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGHYLLEVINDILD 600

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ ++AG MKL+     L   L+E  + ++ +     + ++   D  +   +ADR+ + Q
Sbjct: 601 MSKIEAGRMKLDLEPFDLATTLSESLRVVSGRADNKQLMLRADIDNDI-PVLADRRAIKQ 659

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           I   +LSNA+ F+  G  V ++        +  + + G  I +   + +   F  V +  
Sbjct: 660 ILVNLLSNAVKFTPDGGRVTVRGRVFEEQIVLLIADTGIGIAKQSLRRLGQPFEQVESQL 719

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                G GLGL+I +S  NLHGG + + S     T +   +P
Sbjct: 720 TKTYHGSGLGLAIAKSLTNLHGGSMRLRSQLGVGTVVRVALP 761


>gi|239909171|ref|YP_002955913.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239799038|dbj|BAH78027.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 840

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 128/258 (49%), Gaps = 11/258 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +L   + T   +AE  L +       A   K++F+ ++S+ELR+PL  + G  +LL T
Sbjct: 416 HALLLINDATVRKQAEDELRQAKHQAEAASRAKSAFLANMSHELRTPLGGVAGMLELLLT 475

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +L+ +Q +YV     S+  L +L++DILDL+ ++AG + L  +     +L   + +
Sbjct: 476 T---ALDGEQHEYVTAALKSTRRLSDLLSDILDLSRIEAGKLDLRLAPFETANLRAAILE 532

Query: 657 SIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKA 712
             A    E  + ++  +  G      +D  RLLQI   ++ NA+ F+  G   +      
Sbjct: 533 VFALAAREKGLILEFTLHPGLPARIESDEARLLQILFNLVGNAVKFTGLGFVRVDLWSLP 592

Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLH 768
           AR +G    +FSV ++G  IP+     +F  F    H  Q  R GVGLGLSIV   I L 
Sbjct: 593 ARPDGRTPLVFSVADSGVGIPDGRLGEIFEPFAQGDHPRQQSRFGVGLGLSIVSRLIALL 652

Query: 769 GGHVSISSSDEGVTTINC 786
           GG +++ ++  G T   C
Sbjct: 653 GGELAVDNAPGGTTVYGC 670


>gi|262195776|ref|YP_003266985.1| histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262079123|gb|ACY15092.1| histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 397

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 133/256 (51%), Gaps = 20/256 (7%)

Query: 555 LTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           LT KNE L +A       D +K+SF+  VS+ELR+PLT++IG+ ++L     G LN +Q 
Sbjct: 129 LTAKNERLEQAVEHMQEVDRVKSSFLATVSHELRTPLTSVIGYAEMLFEGLAGPLNKEQR 188

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y++ I + +  LL L+  +L+ + +++G + + +  + +N ++  V  S+  +     I
Sbjct: 189 DYLQTILSKADQLLQLITALLETSILESGPVPIQHEPLDMNQIIERVLSSLGPQARARTI 248

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-------ILKAARDNGD-- 718
            ++ I    L   + D +R+ Q+   +++NA+ F+++ + +        L    D GD  
Sbjct: 249 EVRPIP-ADLPRILGDARRMRQVLRALIANAVKFTTERARIDIEVRVAPLSRYADEGDTP 307

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                V + G  IP +  +S+F  F        RR  G GLGL++ +S+I  +GGH+ + 
Sbjct: 308 GVRVVVADAGIGIPLEDQESIFEPFFQVDSSSTRRYGGTGLGLTLAKSYIEANGGHIWVE 367

Query: 776 SSDEGVTTINCRIPSK 791
           S+     +    +P++
Sbjct: 368 SAPGEGASFTFTVPAE 383


>gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS]
 gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS]
          Length = 1610

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 130/267 (48%), Gaps = 34/267 (12%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            + + AL  K   L  A   K+ F+ ++S+ELR+PL +++    LL  ++ G+L  KQ +Y
Sbjct: 885  KTQVALETKARELELASRYKSEFLANMSHELRTPLNSLLILAQLLTENRAGNLTDKQVEY 944

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I ++ + LL L+N+ILDL+ V+AG ++++   +   DL+  ++Q       E  +  
Sbjct: 945  AKTIHSAGSDLLTLINEILDLSKVEAGRIEVHAEAVSFTDLVEMIEQKFRHVAAEQKLEF 1004

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----------------LK 711
            ++     L   +  DRQRL QI + +LSNA  F+S+G+  +                 ++
Sbjct: 1005 QITVANDLPPILHTDRQRLKQILNNLLSNAFKFTSQGAVKLDIQFLGENTPGYSQQEGVR 1064

Query: 712  AARDNGDF-------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
                 GDF              FSV + G  IP D  ++VF  F        RR  G GL
Sbjct: 1065 GRTTPGDFQPDGIKGREKSQIAFSVTDTGIGIPTDKQETVFEAFQQVDGSTSRRYGGTGL 1124

Query: 757  GLSIVESFINLHGGHVSI-SSSDEGVT 782
            GLSI      L GG + + S +D+G T
Sbjct: 1125 GLSISRQLARLLGGDILLHSEADKGST 1151


>gi|262195305|ref|YP_003266514.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262078652|gb|ACY14621.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 2107

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 13/252 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L EK E L      K+ F+ ++S+ELR+PL +++  +  L T++  +L+ KQ +Y 
Sbjct: 1391 ARQELEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILSRQLATNRDNNLSDKQVEYA 1450

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  S   LL+L+N+ILDLA +++G M +  S++  + L + V++       E+ +  +
Sbjct: 1451 STIHQSGADLLSLINEILDLAKIESGTMAVEVSSVSFSQLSDYVERLFRQVADESGVVYQ 1510

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGD----F 719
            +  +D    +   D QRL Q+   +LSNA  F+ KG      STV  +A  D GD     
Sbjct: 1511 IECADELPAAIETDEQRLRQVLRNLLSNAFKFTKKGEVMLRMSTVKPEADGDYGDEPFLV 1570

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             FSV + G  IP+D  + +F  F        RR  G GLGLSI      L GG + + S 
Sbjct: 1571 AFSVSDTGIGIPKDKQRIIFEAFQQADGGTSRRFGGTGLGLSISREIAELLGGELDVESE 1630

Query: 778  DEGVTTINCRIP 789
                +T    +P
Sbjct: 1631 PGRGSTFTLYLP 1642


>gi|260171812|ref|ZP_05758224.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 926

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 136/239 (56%), Gaps = 19/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL +T  +   
Sbjct: 676 DITELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEDV--- 732

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K 
Sbjct: 733 -AERQEYIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKA 791

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E+   ++++ D  L     ++DR R+ Q+ S  ++NAM F+S+GS  +    ++ G+  
Sbjct: 792 KED---VELVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGSIHVGYELKE-GELE 847

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F VK+ G  I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 848 FYVKDTGIGIEKEQLPHIFERFVKLNSFVH-----GTGLGLSICQSIVEQLGGRIGVDS 901


>gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
 gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
          Length = 1400

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 4/244 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R+ +A   + E L + D  K +F  ++S+E R+PLT I+G  + L+    G ++++  
Sbjct: 336 SARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIVGPLEELRARPDG-VDARAR 394

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +E I  S+  L  LVN +LD + ++AG M+  Y  + L  ++ E+     + + +  +
Sbjct: 395 EELELIHRSALRLGKLVNSLLDFSRLEAGRMQAQYEPVDLAAVVAELASVFRSAVEKAGL 454

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +V           DR    ++   +LSNA+ F+  GS  +   A D G  + +V + G
Sbjct: 455 TFEVDCPPLPEPVYIDRGLWEKVVLNLLSNALKFTFDGSVRVAVRA-DEGHAVVAVADTG 513

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +PE     +F RF  + NA      G G+GL++V+  + LHGG +S +S ++  TT  
Sbjct: 514 IGVPEQEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTISAASVEKQGTTFT 573

Query: 786 CRIP 789
            RIP
Sbjct: 574 LRIP 577


>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 923

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 11/233 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K+EA   A + K+ F+ +VS+E+R+P+  IIG  DL   +    L+SKQ ++++ I +S 
Sbjct: 267 KDEA-EAASKSKSEFMANVSHEIRTPMNAIIGMADLTMET---DLSSKQREFIKIIISSG 322

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
            +LL L+NDILD + ++AG + L      L+ L++++      +M  +   + + I  G 
Sbjct: 323 KVLLRLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVASQTELVIDIRPGV 382

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPE 732
               + D  RL Q+   I +NA  F+SKG  +I  +A        + +F++K+ G  IPE
Sbjct: 383 PQRIIGDPLRLRQVLVNITANAFKFTSKGEIIITVSADQINATKTEIVFAIKDTGIGIPE 442

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++   +F  F        R+  G GLGLSI +  +NL GG++   S  E  +T
Sbjct: 443 EVQPHLFEAFKQADGSTTRKYGGTGLGLSISKRIVNLMGGNIWFRSRPEDGST 495


>gi|119504432|ref|ZP_01626512.1| sensory box sensor histidine kinase/response regulator [marine
           gamma proteobacterium HTCC2080]
 gi|119459940|gb|EAW41035.1| sensory box sensor histidine kinase/response regulator [marine
           gamma proteobacterium HTCC2080]
          Length = 718

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 17/281 (6%)

Query: 523 DSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHV 576
           DS L  S  P  + Q      M T  ++ D ++A  A L    + + +A+E +  +  HV
Sbjct: 118 DSALTMSDFPAHDVQMDQLFFMSTQQSMVDDLQALNAQLKSAKQEVDRANEARQKYFHHV 177

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  +I    L+   KL     K  +Y E  S S+  LL ++N  LD A++++ 
Sbjct: 178 SHEMRTPLNGVISSLSLMSDFKL---EGKLLEYAELASKSADRLLEVINFTLDTASLESH 234

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL-QIFSKIL 695
           + + + S   L+DL+NE       +  E  + +    +       + R +LL Q+ S +L
Sbjct: 235 VSEADNSAFCLDDLINECLMLARPRALEKGLELGRSGERGFSKNYSSRLKLLRQVLSNLL 294

Query: 696 SNAMDFSSKGSTVI----LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHR 748
           SNA+ FS  G+  +    L +    GD + F+V + G  IP D  +S+F  F +  +A  
Sbjct: 295 SNAVKFSQSGTITVGALSLGSDYPQGDMVEFTVSDQGPGIPADAIESLFEPFSTGLSAAT 354

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +G GLGL+IVE F+   GG VS+ SS    T  +  IP
Sbjct: 355 QHAQGTGLGLNIVERFVEALGGEVSVESSVGSGTIFSFTIP 395


>gi|85059559|ref|YP_455261.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Sodalis glossinidius str. 'morsitans']
 gi|84780079|dbj|BAE74856.1| capsular synthesis sensor protein RcsC [Sodalis glossinidius str.
           'morsitans']
          Length = 958

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 132/252 (52%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  VR E +L +      +A++ K+ F+  VS+ELR+PL  IIG  DLLKT    
Sbjct: 445 VLVDVSARVRMEESLQDMAAVAEQANQAKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 501

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L     + V  +S SS +LLN+++DILD + +++  +K+        + ++ +  S  +
Sbjct: 502 ALPDGVDRLVMAMSNSSALLLNIISDILDFSKIESEQLKIEPKEYSPRETVSYIVGSYLS 561

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    D  +  S   D  RL Q+ S +L+NA+ F+  G+ V+    RD G  
Sbjct: 562 LVVKKRLGLYCFIDPDVPDSLRGDPVRLQQVLSNLLNNAIKFTRSGNIVVTVYCRD-GYL 620

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           +FSV++ G  +       +F+ FV     GQR  +G GLGL+I E  +NL  G +++ S 
Sbjct: 621 LFSVRDTGVGMQTREVMQLFDPFVQLGEGGQRPIQGTGLGLAICEKLVNLMDGDIAVESE 680

Query: 778 DEGVTTINCRIP 789
               +    R+P
Sbjct: 681 RGLGSRFTIRLP 692


>gi|301064573|ref|ZP_07204969.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300441321|gb|EFK05690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 485

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 28/304 (9%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS------IIPL--- 533
           I++   + Y+ S G  +F  I+ SF +  KS+  ++ LL +   E +      I P+   
Sbjct: 177 ISSQVLKVYSASAGLVIFLGIMISFFNT-KSINRSIRLLQEQTKEIARGKFATIQPISSP 235

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P  + +    NV             +E L++ DE+K  F+ HVS+ELR+PLT I   T +
Sbjct: 236 PEIKELADHFNVM------------SERLQELDEMKIDFISHVSHELRTPLTVIKEATGM 283

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L           Q + +         L++ VN ILDL+ ++A +M+  +    L+ L+ E
Sbjct: 284 LLDGTYADSRESQQELLTITQQECDRLIDSVNRILDLSRMEAKMMEYVFVPCQLSPLIQE 343

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               +A       IR+++     L     D  R+ Q+   ++SNA+ FSSKG TV ++ A
Sbjct: 344 TVLKLAPIAIREEIRLQLKLQDHLPLVKMDEARIKQVLENLISNALKFSSKGDTVSVRTA 403

Query: 714 --RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             R+  D I  SV + G+ I ++  + +F+RF     RG+   RG GLGLSI +  +  H
Sbjct: 404 VQRNGQDCIQISVADTGTGIQKENLERIFDRF-KRIERGKETARGTGLGLSIAKHIVTEH 462

Query: 769 GGHV 772
           GG++
Sbjct: 463 GGNI 466


>gi|218662726|ref|ZP_03518656.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli IE4771]
          Length = 570

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 9/249 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++    +G L N    
Sbjct: 187 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 246

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI
Sbjct: 247 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 306

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I    + +L +  AD + + Q+   +LSNA+ F+ +G  + +K       G +I S+K+
Sbjct: 307 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 365

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S     T 
Sbjct: 366 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 425

Query: 784 INCRIPSKE 792
           +   +P+K 
Sbjct: 426 VIAILPAKR 434


>gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 587

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 171/348 (49%), Gaps = 31/348 (8%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           K+Q   +  + EGV     D RI L NPAF  ++    +++   T I  I          
Sbjct: 251 KIQA-ILTSMVEGVIAVDKDTRILLVNPAFEKIFNVVADQVIGLTVIEGI---------- 299

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
              ++L   ++ +    R ++   +E++        +++PL   + ++  V V       
Sbjct: 300 -RNYELEKILLKALKKGR-TINQEIEIVPLRRAFRVNVVPLMRKEKIVGVVAVF------ 351

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYV 610
           R +TE    +R+ +++++ FV +VS+ELR+PLT+I GF + L     G++  ++   +++
Sbjct: 352 RDITE----IRELEKMRSEFVANVSHELRTPLTSIKGFVETLLD---GAMEDREVARRFL 404

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I+  +  L  L+NDIL L++++A   +++ S +  N+++ +V   +     E NI ++
Sbjct: 405 EIINVETNRLSRLINDILSLSSIEAKNKEISRSPVNFNEIVEKVLPILVPMAEEKNITVE 464

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 L   +A+   + Q+   ++ NA+ ++ +   V+L A    G    SVK+ G  I
Sbjct: 465 TDIHPDLPVIMANEDLIKQVLINLVDNAIKYTPENGRVVLSATPSGGGLKVSVKDTGIGI 524

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P +    +F RF  V  A   +  G GLGL+IV+  +  HGG + + S
Sbjct: 525 PPESMSRLFERFYRVDKARSRELGGTGLGLAIVKHALEAHGGTIKVES 572


>gi|149377907|ref|ZP_01895635.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149357797|gb|EDM46291.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 640

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +TE     +K D +KN F+  VS+ELR+PLT+I G   LL  + +G L  K S+      
Sbjct: 402 ITEDISERKKVDHLKNEFISTVSHELRTPLTSISGSLGLLANNAVGELPEKASKLAHIAY 461

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S  L  L+ND+LD+  + AG M       VL DL++E  ++IAT   + +I ++V S+
Sbjct: 462 RNSQQLTFLINDLLDMEKLVAGKMPFRSEHYVLQDLVHESVENIATFAQQRDIDLQV-SE 520

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
               +   DRQRL Q  + +LSNA+ FS  GS+V + A++        ++++G  +    
Sbjct: 521 LPAVTVHVDRQRLNQAITNLLSNAIKFSPAGSSVDIFASQREESVRLCIRDHGEGVAPHF 580

Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
            + +F +F S A    RR   G GLGL+I    +    G V   S   EG T
Sbjct: 581 REHIFQKF-SQADASDRRASGGTGLGLAITRELMTRMDGTVDYESIPGEGAT 631


>gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1991

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 146/297 (49%), Gaps = 18/297 (6%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV--------TDSVRAERALTEKN--- 559
           R   + T++ L+    EY + P  +A+ +L  V            +VRAERA  E     
Sbjct: 685 RAGEEATIQGLNSGADEYLVKPF-SAKELLARVTALLTVSQLRQAAVRAERAHVEDTLRF 743

Query: 560 -EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASS 617
            E  R+A  ++   +  VS++LRSPLT I    +LL+     G   ++  +  + I  S+
Sbjct: 744 LEESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSA 803

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +  L++D+LDLA++DAG + +      +++L+ + ++       E  +++    +  L
Sbjct: 804 DRMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGL 863

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMC 735
                D++R+LQ    +LSNA+ F+  G +++L+A  + G  D   SV + G  IP    
Sbjct: 864 -ILSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQ 922

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +F+R+       +R G GLGLSI +  +  HGG + +  +    +T +  +PS +
Sbjct: 923 PHIFDRYWHGVQ-NKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLPSGQ 978



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 124/245 (50%), Gaps = 8/245 (3%)

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            S RA     ++ E L   D+ K +F  +VS+E R+PLT I+G  +   +    +L  ++ 
Sbjct: 1317 SARAYEQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEK- 1375

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
              ++ +  ++  L  +VN +LD + ++AG  + +Y  + L+ +   +  +  + +    +
Sbjct: 1376 --LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGL 1433

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNN 726
            R+ V           D +   ++   +LSNA+ ++ +G   V+L+   D+   + +V++ 
Sbjct: 1434 RLVVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYEGEIRVVLRWQDDHA--VLTVQDT 1491

Query: 727  GSSIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IPE+    VF RF    A +G+   G G+GL++V+  + LHGG +S+ S+    T  
Sbjct: 1492 GVGIPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAF 1551

Query: 785  NCRIP 789
              R+P
Sbjct: 1552 TLRLP 1556



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 7/238 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615
           ++ EAL + D  K +F  +VS+ELR+PL  ++G   D L+ ++   L  KQ +  E +  
Sbjct: 320 KRAEALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEY-PLPPKQRERQEVVHR 378

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +   L  LVN +LD A ++AG  + ++    L+ L  E+  +  + M    + + V    
Sbjct: 379 NGLRLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPV 438

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734
              +   D     ++   +LSNA+ F+ +G   I  A R  GD +  +V++ G+ +PE  
Sbjct: 439 LPEAVYVDPAMWEKVVLNLLSNALKFTLQGEVRI--ALRWLGDRVELTVQDTGTGMPEAE 496

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F RF  V  A      G G+GL++V+  + LHGG V++ S     +T    +P+
Sbjct: 497 LPRIFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLPA 554



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 12/291 (4%)

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE---KNEALRKADE 567
            R   + T+E L     +Y + P    + ++      D  R  R +     + + LR++  
Sbjct: 1701 RAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDMARVRREVVRNEIEKKVLRESVR 1760

Query: 568  IKNSFVQHVSYELRSPLTNI-IGFTDLLKT--SKLGSLNSKQSQYVEYISASSTI--LLN 622
            +++ F+  VS+ELR+P++ + + F  L+++   + G   S ++  V+  +    +  L  
Sbjct: 1761 VRDEFLNLVSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVKAQTTQKQLHRLAR 1820

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LV  +LD +    G +KL    + L+ + + V +   +K       + + +   +  +  
Sbjct: 1821 LVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVLTLNAPSPVMGYC- 1879

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNR 741
            DR RL Q+   +L NA+ F + G  + +   RD+   + +V ++G+ I PED  + +F R
Sbjct: 1880 DRARLHQLLEGLLDNALKFGA-GKPIEVAVWRDSDHALLTVMDHGAGIEPEDE-ERIFGR 1937

Query: 742  FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            F          G GLGL I       H G + +  ++ G  T    +P  E
Sbjct: 1938 FERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALPLNE 1988


>gi|309790857|ref|ZP_07685401.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227144|gb|EFO80828.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 899

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 134/250 (53%), Gaps = 26/250 (10%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD +K  F+  +S+ELR+P+T I GFT LL    LG LN  Q ++V  I +++  ++ L
Sbjct: 650 EADRLKTEFIGTMSHELRTPMTAIKGFTQLLAMGGLGPLNDTQREFVNTIHSNTERMIAL 709

Query: 624 VNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +ND+LD+  +++G + L + ++    VL+ +++EV+ +++ + HE  I I       +  
Sbjct: 710 INDVLDITKIESGSVDLEWRSLHLVEVLSGVISEVQPAVSAREHELTISIP----PGMPL 765

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFS------------V 723
             AD  RL QI   +LSNA+ ++ KG  + ++A    A +  D++ S            +
Sbjct: 766 VRADAHRLHQILFNLLSNAIKYTPKGGKISVEAYEARADELPDYLRSGVTAEKRYVQVNI 825

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I  +    +F+RF    N  + +  G GLGLS+V+  + L  G + + S+    
Sbjct: 826 RDTGVGIDREEIGRIFDRFYRTENPLKIEAGGTGLGLSLVKPLVELLNGKIWVESTVGQG 885

Query: 782 TTINCRIPSK 791
           +T +  +P+ 
Sbjct: 886 STFSLLLPTP 895


>gi|229017311|ref|ZP_04174215.1| hypothetical protein bcere0030_18660 [Bacillus cereus AH1273]
 gi|228744012|gb|EEL94110.1| hypothetical protein bcere0030_18660 [Bacillus cereus AH1273]
          Length = 392

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 9/232 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASST 618
           + + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  + 
Sbjct: 167 DKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTDEEIKQGMGI--ISGETD 224

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L++LV ++LD + + +    L    + L D+L E    +  K  E   +I+++++ +  
Sbjct: 225 RLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEK--QIQLVANLERV 282

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             V DR RL Q+F  I+ NA+ +S++  T+ ++AA+  G  +  V + G  I ++    +
Sbjct: 283 ELVGDRNRLKQVFLNIIHNAIKYSNEKGTIYIEAAKSEGKAVIKVTDQGIGIAKEHLPFI 342

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              F   N+H     G G+GL+IV+  + LHGG +SI+S +   TTI  ++P
Sbjct: 343 EQSFYQINSH---IEGAGIGLAIVKKMVELHGGTLSITSRERVGTTILIKLP 391


>gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 583

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 6/263 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  +  + +++   R E+ L     A   A++ K+ F+ ++S+ELR+PL  IIGF+++L
Sbjct: 283 QAMIIGVYRDISAMRRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNAIIGFSEML 342

Query: 595 KTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
              +L   +  KQ +Y   I +S   LL++VN ILD++ + +G   L    IVL  L+  
Sbjct: 343 ADPQLCPQDPLKQREYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPIVLAPLIAS 402

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILK 711
               +  +     I +  I        VAD+Q   QI   +LSNA+ F+ +    T+ + 
Sbjct: 403 CCAMLRPQAEAKEIELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRRGRVTIAVD 462

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
              D  D I  +V++ G  I  D    +   F     R +R   G GLGLSIV   + LH
Sbjct: 463 CVVDCLDDIQIAVQDTGIGISADDLTRLGEPFFQAMVRQERPHEGTGLGLSIVRGLVELH 522

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG + I S  +  T++  R+P +
Sbjct: 523 GGTLLIESEPDQGTSMIVRLPRE 545


>gi|227822277|ref|YP_002826248.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227341277|gb|ACP25495.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 511

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 132/251 (52%), Gaps = 14/251 (5%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++ T  LG LN+    
Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLNNPT-- 299

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y EY   I  S   LLNL+N+ILDL+ ++AG  +LN   + L ++  +    +  +    
Sbjct: 300 YKEYTVDIHRSGEHLLNLINEILDLSRIEAGRYELNEEAVNLVEIAEDCIGMVQLRARGK 359

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSV 723
           NI I+   +  + S   D + + Q+   +LSNA+ F+  G  + +K       G +I S+
Sbjct: 360 NITIEPQFEQAMPSVWIDEKAMRQVALNLLSNAVKFTPAGGEITVKVGWTAGGGQYI-SI 418

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
           K+NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S   EG
Sbjct: 419 KDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRSKLREG 478

Query: 781 VTTINCRIPSK 791
              I    P +
Sbjct: 479 TEAIAILPPRR 489


>gi|124266005|ref|YP_001020009.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124258780|gb|ABM93774.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 975

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 146/287 (50%), Gaps = 27/287 (9%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKA-------DEIKNSF 572
           +++YS++P+ +    + F+     N+TD  RAE  +  KN  L++        D+ K+ F
Sbjct: 125 LIDYSLLPIRDNSGKIVFLLPEGRNITDKKRAEAEIARKNRELQRLLDKIQRLDDAKSDF 184

Query: 573 VQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
             +VS+ELR+PL  I+G ++ LL TS+   L+  Q + +  I  ++ +L+  VND+LDLA
Sbjct: 185 FANVSHELRTPLALILGPSESLLATSE--GLSDAQRRDLRVIQRNAAMLMKHVNDLLDLA 242

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNIRIKVISDGKLGSFVADRQRLL 688
             DAG M L Y+ +   DL  EV+   A       E ++   V +   L   V D+Q   
Sbjct: 243 KFDAGKMALRYTRV---DLAAEVRTLAAHFEAVAAERSLSYVVQAPAALEVEV-DQQMFE 298

Query: 689 QIFSKILSNAMDFSSK-GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           +I   +LSNA  F+   G       A  +      V+++G  +  D+ + +F RF   A 
Sbjct: 299 RILLNLLSNAFKFTPDFGRIRCSLEANPDHSIQLVVEDSGCGVRADLREEIFERF-HQAQ 357

Query: 748 RGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G  R   G GLGL+I + F++LH G +S+S +  G       +PS+
Sbjct: 358 SGTTRSFSGTGLGLAIAKEFVDLHTGTISVSDAIGGGAQFRVELPSR 404



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 124/280 (44%), Gaps = 29/280 (10%)

Query: 529 SIIP----LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIK--NSFVQHVSYELR 581
           S+IP    LP   T++T V ++T   RAE  L +  +AL +   +         +++E+ 
Sbjct: 705 SLIPGTSDLP--PTLITVVEDITTQKRAEVELAQTKDALARVSRVTTMGELAASIAHEVN 762

Query: 582 SPLTNII--GFTDL--LKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAG 636
            PLT ++  G   L  L T     L  + + Q +   +  ++ ++  +   L  +  D  
Sbjct: 763 QPLTAVVVNGHACLRWLSTEPRNDLEVQDAIQRIVRDANRASEVIARIRGFLKRSKTDRT 822

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           ++ ++    V+ D++   + S+ +      +++    D  L    AD  +L Q+   ++ 
Sbjct: 823 MVCMDN---VVEDVIGLARDSLRSA----GVQLIKHVDSDLPRVFADSVQLQQVILNLMM 875

Query: 697 NAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           N ++     +T+     L+  +  GD   SV ++G+ +     + +F  F +     +  
Sbjct: 876 NGIEAMGSCATLERQLELRVVKHGGDIDVSVSDSGTGLVTADFERIFEAFYTT----KPD 931

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G+G+GL+I  S +  HGG +   ++     T+  R+P  E
Sbjct: 932 GMGMGLAICRSIVEAHGGRLWAQANKTQGLTLQFRLPIAE 971


>gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
 gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
          Length = 1406

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 137/260 (52%), Gaps = 20/260 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            RA R+L ++   L+ + + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++
Sbjct: 939  RARRSLEDRAHQLQVSSKYKSEFLANMSHELRTPLNSLLILARLLADNSEKNLTPKQVEF 998

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I  + + LL L+N+ILDL+ V+AG M+LN S + ++ L++ V+ S      E  +  
Sbjct: 999  AQTIYKAGSDLLQLINEILDLSKVEAGRMELNPSHVSISQLVDYVEASFRPLASEKGLAF 1058

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-----------RDN 716
             V +S         D QRL Q+   +LSNA+ F+S G   ++++ A            D 
Sbjct: 1059 AVEVSPDVPDQLWTDEQRLQQVLRNLLSNAVKFTSSGEVRLVIEPAWAVEDIDVDTFTDP 1118

Query: 717  GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             + I FSV + G  IPED  + +F  F        RR  G GLGLSI  +   L GG + 
Sbjct: 1119 DEVIAFSVIDTGIGIPEDKLQLIFEAFHQGDGGTSRRFGGTGLGLSISRNMAELLGGEIR 1178

Query: 774  ISSS-DEGVT---TINCRIP 789
            +SS+  EG T    +  R+P
Sbjct: 1179 VSSTVGEGSTFTLLLPVRLP 1198


>gi|77359054|ref|YP_338629.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873965|emb|CAI85186.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1120

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 14/243 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +  E+ L    E   +A   K+ F+  +S+E+R+P+  ++G  +++K +KL   + +Q  
Sbjct: 587 IETEQQLVTAKETAEQAVAAKSEFLASMSHEIRTPMNGVLGMLNIVKNTKL---DQQQMH 643

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++E   +S+  LLN++NDILD + ++AG + +      L  LL EV +S A K  +NN  
Sbjct: 644 HIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKIQFNLPRLLGEVVESFALKAEQNNTI 703

Query: 669 IKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFS 722
           +  I D  L      V+D  RL QI S ++SNA+ F+  G  V+   +    D    + S
Sbjct: 704 L--ILDATLITVSEIVSDPNRLRQILSNLISNAVKFTFDGKIVVTAKIDETTDGTSLVCS 761

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DE 779
           + + G  I  +   ++F+ F        R+  G GLGL+IV+    L GG VS++S  +E
Sbjct: 762 IIDTGIGIKPEKHSTLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMGGEVSVTSMLNE 821

Query: 780 GVT 782
           G T
Sbjct: 822 GST 824


>gi|60681363|ref|YP_211507.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60492797|emb|CAH07571.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 637

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 9/237 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R++ AL E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L +   GS    Q
Sbjct: 397 DLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GSSEEDQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S+     E+ 
Sbjct: 455 RNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMSRRESG 514

Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723
            R   + + K  SFV   D QRL Q+   +L+NA  F+  G+ T+  +  ++    +F+V
Sbjct: 515 NRF--VFETKTDSFVLQTDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 572

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I    EG
Sbjct: 573 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWIDPDYEG 627


>gi|218682383|ref|ZP_03529984.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 894]
          Length = 468

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++    +G L N    
Sbjct: 199 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 258

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI
Sbjct: 259 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 318

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I    + +L +  AD + + Q+   +LSNA+ F+ +G  + +K       G +I S+K+
Sbjct: 319 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 377

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S     T 
Sbjct: 378 NGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 437

Query: 784 INCRIPSK 791
           +   +P+K
Sbjct: 438 VIAILPAK 445


>gi|294495585|ref|YP_003542078.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666584|gb|ADE36433.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 736

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 128/229 (55%), Gaps = 2/229 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E +L E      +A+  K+ F+ ++S+ELR+PL ++IGF+ +L+T+    L+ K+ +Y
Sbjct: 493 KGEESLIEGRIVAEEANRTKSEFLANMSHELRTPLNSVIGFSQVLETNSSNHLDDKEQKY 552

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  S + LL L+N+ILD++ V++G M     T+ L +++++    +     + ++ +
Sbjct: 553 VKNIYESGSHLLELINNILDISKVESGKMDYLPETVNLTEIIDDTIVLVEPMAKKKSVDL 612

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +    +      DR +  +I   +LSNA+ F+ +  TV + +   N +F  SV + G  
Sbjct: 613 HLNIKSEDLEIHVDRLKFKEIMYNLLSNAIKFTPEKGTVSVNSKCVNKNFQISVSDTGIG 672

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +P++  +S+F+ F        R   G GLGL++V  ++ +HGG + + S
Sbjct: 673 VPKEKFESIFDPFKQVDSTSSRSFGGTGLGLALVRKYVEMHGGEIWVES 721


>gi|156743538|ref|YP_001433667.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
 gi|156234866|gb|ABU59649.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
          Length = 548

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  LR+A+ +K+ F+  +S+E+R+PL+ I+G  +LL+   +G LN +Q + +  I 
Sbjct: 152 LARTNAELRRANRLKDEFLAGISHEVRTPLSAILGLAELLRAKIVGPLNDEQVEMLSRIE 211

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRIKV 671
           AS   LL ++ND+LDLA ++AG  +L    +  + +      + + +A + H+   R+ +
Sbjct: 212 ASGRHLLAVINDLLDLAKIEAGRFELEPRLVAAHQVCRSSLLMVKELALRKHQ---RVHI 268

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSS 729
             D K+    AD +RL Q    +LSNA+ F+  G  V L    D    I   +V + G  
Sbjct: 269 NLDPKVEVLHADERRLRQALINLLSNAVKFTPPGGDVGLDLEGDPEQEIVRITVWDTGIG 328

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I  +    +F  F  + N ++  + G GLGL +V     LHGG VS+ S
Sbjct: 329 IAAEDIPRLFQPFSQIQNKYQHDQAGSGLGLVMVARLAELHGGGVSLVS 377


>gi|92117002|ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91799896|gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
          Length = 775

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 178/402 (44%), Gaps = 43/402 (10%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT- 478
           TV+ DL  +         + I+ + E   ++  D R+ L N  F+ L K  E+ ++ GT 
Sbjct: 371 TVEADLRLR---------DAIETIPEAFVLWDADDRLVLCNSHFQRLHKLPESAVAAGTS 421

Query: 479 --------HIRNIAATCSRYYNESDGWDLFAAIITS-----FDDERKSLQGTLELLSDSV 525
                    +  I A        + G   F A + +       + R    G + + +D  
Sbjct: 422 YETVIEVGRMHEICARPPETGTTAPGARTFEAQLDNGCWLNISERRTKDGGYVSVGTDIT 481

Query: 526 ---------------LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                          L  ++I L   Q  L    +  +  A++   EK+ A   A+  K+
Sbjct: 482 RIKEHEQKLVDNDLRLRATVIDLKRTQATLEQQAIELADLAQKYAKEKDRA-EDANRAKS 540

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILD 629
            F+ ++S+ELR+PL  IIGF++++     G+L S K S+Y   I  S   LL ++ND+LD
Sbjct: 541 KFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSEKYSEYCHDILTSGQYLLEVINDVLD 600

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ ++AG MKL+   + L+  L E  + +  +  +  +   V  D  + +  AD + + Q
Sbjct: 601 MSKIEAGRMKLDMEPLDLSRTLAESLRVVTGRTSDKKLTFDVRIDDDI-AITADHRAVKQ 659

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           I   +LSNA+ F+  G  V+ ++         ++ + G  I     + +   F  V +  
Sbjct: 660 IIVNLLSNAVKFTPDGGRVMARSQVFANSVALTIADTGIGIAPHSLRKLGKPFEQVESQL 719

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                G GLGL+I +S +NLHGG + + S     T +   +P
Sbjct: 720 TKTYAGSGLGLAIAKSLVNLHGGSMRLRSKPGTGTVVRVTLP 761


>gi|221065881|ref|ZP_03541986.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
 gi|220710904|gb|EED66272.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
          Length = 1085

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 9/247 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F +++  V  ERAL     A  +A E K++F+  +S+E+R+PL  ++G  +LL  ++
Sbjct: 473 LCAFTDISTRVEIERALERARSAADEASEAKSTFLSTMSHEIRTPLYGVLGTLELLTATR 532

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+S+Q QYV  I  SS ILL L++DILD++ ++AG +KL        +L+ +   S 
Sbjct: 533 ---LDSQQRQYVNRIEGSSQILLQLISDILDVSKIEAGQLKLERLAFSPRELVQDCTGSY 589

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARD 715
           A    +  +     +  G   S   D  R+ QI S ++SNA+ F++ GS ++  L   + 
Sbjct: 590 AAMAQQKGLLFFSAVDTGIPDSVFGDPVRVRQILSNLISNAIKFTNVGSVIVRCLVVDQP 649

Query: 716 NGDFIFS--VKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G       V ++G  I  +    +F  F + +  R   RG GLGLSI      L G  +
Sbjct: 650 PGHVTLQIEVADSGVGIDREEQNRLFTPFYIVDGSRHVVRGAGLGLSICARLAELMGSSM 709

Query: 773 SISSSDE 779
            + S  +
Sbjct: 710 QVKSEKQ 716


>gi|159897998|ref|YP_001544245.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
            23779]
 gi|159891037|gb|ABX04117.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
            23779]
          Length = 1380

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 11/265 (4%)

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQH 575
            ++V E  I P  N + ++   N+T+  R E+ L ++       N  L KA  +K+ F+  
Sbjct: 840  NTVFEARIAPSANDEVVMVIRNITERKRIEQTLQQQTDELSIANAELAKAARLKDEFLAS 899

Query: 576  VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            +S+ELR+PLT I+ FT+ L+  + G+LN  Q+Q ++ I  +S  LL+L+NDILDL+ ++A
Sbjct: 900  MSHELRTPLTGILAFTEALRYDQYGALNQAQAQALQQIDENSRHLLDLINDILDLSKIEA 959

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
            G + +N+ +++++++     + +        + +            AD +RL Q+   +L
Sbjct: 960  GKLTINHQSMLIDEICQASIRMVQKLAQNKQLELLYEPCAADAMLCADSRRLKQMLVNLL 1019

Query: 696  SNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
            SNA+ F+  G  + L    D+       +V + G  I       +F  F  + +    Q 
Sbjct: 1020 SNAVKFTPAGGRIGLSVKLDSQFHQVELTVWDTGIGINTQDIPKLFRPFSQLDSKLSRQY 1079

Query: 752  RGVGLGLSIVESFINLHGGHVSISS 776
             G GLGL++V    NLHGG V + S
Sbjct: 1080 AGTGLGLALVYHMANLHGGRVELQS 1104


>gi|332559988|ref|ZP_08414310.1| hypothetical protein RSWS8N_13045 [Rhodobacter sphaeroides WS8N]
 gi|332277700|gb|EGJ23015.1| hypothetical protein RSWS8N_13045 [Rhodobacter sphaeroides WS8N]
          Length = 520

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 16/292 (5%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L  + L+  +   +        ++W     G+++WAN +Y            K +   R 
Sbjct: 145 LSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLHEA-------AKRLPPDRD 197

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSFGEAGIAID----VSK 297
           L       R+   +A  +        +E  G ++ + +    +  G    A+     V  
Sbjct: 198 L--SWPLPRLFDRAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E T+ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS    LE
Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            LR    +PE  ++ +W+  I  + K++ +  + +TW LP+GQT  VI   +P G    M
Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALM 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           FE+++ ++    +Y   +++    +D + + +AVF P G + ++N A+ +LW
Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALW 427


>gi|323137204|ref|ZP_08072283.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397562|gb|EFY00085.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 623

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K  F+ +VS+ELR+PL  IIGF+++L   +L   +  KQ +Y E IS S   LL +VN I
Sbjct: 359 KTRFLANVSHELRTPLNAIIGFSEMLANPELAPTDPGKQREYAEIISNSGHHLLEVVNTI 418

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ +++G M++      L  L+++    +  K  ++ + +       +   VAD++  
Sbjct: 419 LDMSKIESGSMQIFPEPFSLPALIDQCCDMVQLKADQSAVTLLRDYRRDIDDLVADKRAC 478

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746
            QI   +LSNA+ F+     V ++ A +      SV ++G  I P D+ +     F ++A
Sbjct: 479 KQILLNLLSNAVKFTPANGKVKIRLAPEGNHLGISVIDSGIGIAPADLARLGDPFFQASA 538

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            H     G GLGLS+V   + LHGG +++ S+    T++  R+P
Sbjct: 539 SHDRTHEGTGLGLSVVRGLVGLHGGSITVESAPRKGTSVTVRLP 582


>gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 595

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 173/354 (48%), Gaps = 32/354 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV     DG I ++NP    F   W  E+N         N+ A     +   +  +L
Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNM--------NVQADD---HLPPEAKEL 310

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   + +  ++ + ++ TL+  S  +L   + PL  AQ+     +V  +V   R +TE+ 
Sbjct: 311 FQNTVNT--EKEQMIEMTLQGRSWVLL---MSPL-YAQS-----HVRGAVAVLRDMTEE- 358

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S    + +  + I   S  
Sbjct: 359 ---RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEDDRKEIAQIIYDESLR 414

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVND+LDLA +++G   L+Y  + L++ L ++ +  +    E NI +          
Sbjct: 415 MGRLVNDLLDLARMESGHTALHYVKVNLDEFLEKIFRKFSGVAKEKNISLTDDISLNETE 474

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F  D  ++ Q+F+ ++ NA+  +  G TV +            VK++GS IPE+    +F
Sbjct: 475 FAFDEDKMEQVFTNLIDNALRHTQSGGTVHIAVQSVKDGLKIDVKDSGSGIPEEDLPFIF 534

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF     A    R G GLGL+IV++ +  H G +++ S  +  TT    IP+K
Sbjct: 535 ERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTK 588


>gi|229023488|ref|ZP_04179984.1| hypothetical protein bcere0029_18230 [Bacillus cereus AH1272]
 gi|228737756|gb|EEL88256.1| hypothetical protein bcere0029_18230 [Bacillus cereus AH1272]
          Length = 438

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 9/232 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASST 618
           + + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  + 
Sbjct: 213 DKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTDEEIKQGMGI--ISGETD 270

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L++LV ++LD + + +    L    + L D+L E    +  K  E   +I+++++ +  
Sbjct: 271 RLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEK--QIQLVANLERV 328

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             V DR RL Q+F  I+ NA+ +S++  T+ ++AA+  G  +  V + G  I ++    +
Sbjct: 329 ELVGDRNRLKQVFLNIIHNAIKYSNEKGTIYIEAAKSEGKAVIKVTDQGIGIAKEHLPFI 388

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              F   N+H     G G+GL+IV+  + LHGG +SI+S +   TTI  ++P
Sbjct: 389 EQSFYQINSH---IEGAGIGLAIVKKMVELHGGTLSITSRERVGTTILIKLP 437


>gi|150018743|ref|YP_001310997.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905208|gb|ABR36041.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 920

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 179/396 (45%), Gaps = 27/396 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T QV+ E       ++    +D++ E + VF  +G+  + N   R  +  E   L  G
Sbjct: 499 DVTEQVNYEKHIKEQKELFEAILDNMQESIYVFDKNGKYIIKNKVARKRFSGEFKELGEG 558

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLP 534
             +  +      Y  E +   +    I             ++   D +  Y+II   P+ 
Sbjct: 559 YKVTEL------YDLEGNKMPIDETPIYRVKSGEIVRNNIVKFKKDDMEYYNIISGTPIY 612

Query: 535 NAQT-----MLTFVNVTDSVRAERALTE-----------KNEALRKADEIKNSFVQHVSY 578
           +        +++F++VTD +++++ L E           KNE L +A E+K+ F+  +S+
Sbjct: 613 DNSGDFLYGVVSFLDVTDMIKSQQDLQEVQEKLLAVEREKNEGLEQAMEMKDEFLSFISH 672

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E R+PL  I      L       +  K   Y+  I  ++   L LVN+ILD+  V+AG +
Sbjct: 673 EFRTPLNVINTAIQTLNLVYSNQMTEKIKAYMGTIKQNTNRQLRLVNNILDITRVNAGRI 732

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            +N   I +  L   + +S+     +  +R+  +S         D ++  +I   +LSNA
Sbjct: 733 TINKKNIDIVFLTKAITESVYEFASKKGVRLTFVSKLTKKIIGVDDEKYERIILNLLSNA 792

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           + F+  G ++I+       +    VK+NG  IP +    +F RF  V ++   Q  G G+
Sbjct: 793 IKFTPAGKSIIVNLHSAKTNICIEVKDNGIGIPRNKIDVIFERFGQVESSLSRQAEGTGI 852

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLS+V+ F+   GG VS+ S+    TT    +P+++
Sbjct: 853 GLSLVKRFVEALGGSVSVKSNLGKGTTFKILLPNEK 888


>gi|262384808|ref|ZP_06077940.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262293524|gb|EEY81460.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 494

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 10/242 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L  +Q+ Y+ 
Sbjct: 254 EEDLIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEE--DLELRQN-YIS 310

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I  ++ +LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E   I + 
Sbjct: 311 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMQDIYNSIQLRKPEGVEITLD 370

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
             SD     F  DR RL QI   +L+NA+  + KGS          G  + F V + G  
Sbjct: 371 ACSD---IIFNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEAEGKMVKFYVSDTGCG 427

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D   ++F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P
Sbjct: 428 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLP 485

Query: 790 SK 791
            K
Sbjct: 486 MK 487


>gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1480

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 162/354 (45%), Gaps = 44/354 (12%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTE--------ENRLSPGTHIRNIAATCSR---YYNES 494
           G+ V   DG+I   N ++ +LW  E        E  L     I +      R    Y+E 
Sbjct: 576 GILVTSLDGKILQFNESYAALWDIEVKTGLDHREFELKNRDKILDYQGVIERIASLYSEP 635

Query: 495 D--GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNVTDS 548
           D  G+D+                  LEL    + E   +P+ + + +L    +F +++  
Sbjct: 636 DFEGFDI------------------LELTDGRIYERVSLPMKSDEGLLGRVWSFHDISKR 677

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++ +  L    E    A + K+ F+  +S+E+R+P+  ++G   LL  ++L      Q +
Sbjct: 678 MKTQNELILAKEEADLAVKAKSEFLASMSHEIRTPMNGVLGMLGLLNNTQL---TDYQKR 734

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V    +S+  LL L+NDILD + +DAG ++L      L  +L E  + +A +    ++ 
Sbjct: 735 RVSIAQSSAKSLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAFQAQNKSLE 794

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVK 724
           + +   G   S V  D  RL Q  + ++ NA+ F+SKG  +I    RD+GD   F   + 
Sbjct: 795 LVLDLKGIEHSMVTGDPSRLRQALTNLVGNAIKFTSKGEVLIEAGLRDSGDEWCFWCVIT 854

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  I  D   S+F+ F        R+  G GLGL+IV+    L GG VSI+S
Sbjct: 855 DTGIGIAADKISSLFDSFSQVDASTTRKYGGTGLGLAIVQKICQLMGGDVSITS 908


>gi|53713096|ref|YP_099088.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215961|dbj|BAD48554.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 639

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 9/236 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R++ AL E  +   +++ +K++F+ ++SYE+R+PL  I+GF+D+L +   GS    Q
Sbjct: 399 DLERSQVALYEAKDRAEESNRLKSAFLANMSYEIRTPLNAIVGFSDVLASG--GSSEEDQ 456

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S+     E+ 
Sbjct: 457 RNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMSRRESG 516

Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723
            R   + + K  SFV   D QRL Q+   +L+NA  F+  G+ T+  +  ++    +F+V
Sbjct: 517 NRF--VFETKTDSFVLQTDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 574

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I    E
Sbjct: 575 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWIDPDYE 628


>gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 840

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 175/371 (47%), Gaps = 33/371 (8%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE-------NRLSPGT-HIRNIAATCSRY 490
           D   + + + GP+G I   NP   S+  +  EE       N L+P   H +++ A   ++
Sbjct: 282 DSAQDAIVLMGPEGEIAYWNPMAESIFGYTAEEIVGKDLHNILAPARYHEQHLKAF--QH 339

Query: 491 YNESDGWDLFAAII--TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVTD 547
           + ++   D     I  ++ D + +    +L L        S + L N    +  V ++T 
Sbjct: 340 FQQTGRGDAIGKTIELSALDRDGREFPISLSL--------SAVSLQNRWHAVGIVRDITR 391

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              AE  + +  +    A+  K+ F+ ++S+E+R+P+  I+G   LL+ +   SL+ +Q+
Sbjct: 392 QKDAEEKIVKARDEAEAANRAKSEFLANMSHEIRTPINGIMGMMQLLEAT---SLDVEQA 448

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QYV+    S+  L  L++DILDL+ ++AG M++      +  L   V +       E NI
Sbjct: 449 QYVQMGLTSARRLTRLLSDILDLSRIEAGQMEIRQEEFDVRKLCFSVTELFMVTCREKNI 508

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
            ++   D +L    + D  RL QI   ++ NA+ F+ +G   +    +K    +   + +
Sbjct: 509 ALEYSLDPQLPEILLGDETRLQQILFNLVGNALKFTEQGRVQVNWHLMKRRERDIQVLLT 568

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  +       +F  FV   NA+  + +G GLGLSIV+  + L  G V++ S  + 
Sbjct: 569 VSDTGIGMTPHRAGDLFKPFVQAENAYTRKYQGAGLGLSIVKRLVELMHGEVTVESMPDA 628

Query: 781 VTTINCRIPSK 791
            +T N  +P K
Sbjct: 629 GSTFNILLPLK 639


>gi|255021586|ref|ZP_05293629.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968974|gb|EET26493.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
          Length = 1018

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 10/248 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L E  E   +A++ K+ F+  +S+ELR+PL +I+GF  LL TS+   L+ +Q  +VE
Sbjct: 607 EQRLVESKEQAERANQAKSQFLSSMSHELRTPLNSILGFAQLLSTSRREPLSPRQQGFVE 666

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
           +I  +   LL+L+ND+L+LA ++AG +  +   + L  LL E  + +A    E +++ ++
Sbjct: 667 HIRDAGQHLLSLINDVLNLARIEAGELTFSPEVLSLAALLRETSEMVADLARERDVQLLE 726

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDNGDFIFSV 723
            + D  L   V D  R  QI   +LSNA+ ++  G  V++++       A        ++
Sbjct: 727 TLGDDPLWVCV-DLTRTRQILLNLLSNAIKYNRPGGRVLIRSLAPIPERAERPVCLGIAI 785

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  IP D    +F  F       G   G G+GL I +  +   GG +   S +   T
Sbjct: 786 SDTGIGIPADRQHRLFRPFERLGQENGPIEGTGIGLMITKELVERMGGEIRFESREGEGT 845

Query: 783 TINCRIPS 790
           T    +P+
Sbjct: 846 TFFVFLPA 853


>gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1002

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 132/249 (53%), Gaps = 10/249 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S +++  L EK      A+  K+ F+  +S+ELR+PL  I+GFT ++  ++  SL+S+Q 
Sbjct: 509 SKQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMM--NRDSSLSSQQQ 566

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I+ S   LL+L+ND+L+++ ++AG + LN +   L++L+  VK+ +  K     +
Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------ 720
            + V  D +L  ++  D  +L QI   ++ NA+ F+  G   +  +   +  +       
Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQ 686

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDE 779
             VK+ G  I +D  +++F  F    +  Q + G GLGLSI   F  L GG +++ S   
Sbjct: 687 LEVKDTGIGINQDELETIFEAFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLG 746

Query: 780 GVTTINCRI 788
             +T  C I
Sbjct: 747 QGSTFTCTI 755


>gi|209549672|ref|YP_002281589.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535428|gb|ACI55363.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 511

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++    +G L N    
Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI
Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I    + +L +  AD + + Q+   +LSNA+ F+ +G  + +K       G +I S+K+
Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S     T 
Sbjct: 421 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480

Query: 784 INCRIPSK 791
           +   +P+K
Sbjct: 481 VIAILPAK 488


>gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1102

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+      E+ L        +A + K+ F+ ++S+ELR+PL  +IG T+LL+ + L   N
Sbjct: 427 NIQRRKETEQKLKAAKLTAEEASQTKSEFLANMSHELRTPLNGVIGMTELLQGTHL---N 483

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q ++V+   +S   LLNL+NDILD + ++AG + L+     L ++L +   ++  + +
Sbjct: 484 QHQQEFVDACRSSGESLLNLINDILDFSKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTN 543

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI 720
           E N+ +    D +   +   D  RL QI   ++ NA+ F+  G  V+     +R+NG+  
Sbjct: 544 EKNLELPCFVDPESRLTLKGDSYRLRQILVNLIGNAIKFTDSGEVVVRTRTVSRENGNIR 603

Query: 721 --FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             FSV + G  I E     +F  F  V  +      G GLGL I ++ + L GG + I S
Sbjct: 604 IHFSVTDTGIGISESKINRLFQSFSQVDASTTRNYGGTGLGLVISQNLVELMGGRIGIES 663

Query: 777 SDEGVTTINCRIP 789
            D   +T    IP
Sbjct: 664 QDGVGSTFWFEIP 676


>gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1046

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 115/218 (52%), Gaps = 3/218 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  A   K+ F+ ++S+ELR+PL + +    LL  ++ G+LN +Q +Y   I +++  LL
Sbjct: 360 LAAASRYKSEFLANMSHELRTPLNSALILARLLAENREGTLNEEQVKYARAIHSANNDLL 419

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            L+NDILDL+ ++AG ++L   T+    L+  ++++      +  + +++ I+ G    F
Sbjct: 420 ALINDILDLSRIEAGHVELVDETLHTPQLVERLRETFEPLAQQKGLELRMEIAPGAPAQF 479

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +AD QRL Q+   +L+NA+ F+  GS  +       G   F+V + G  I  +  + +F 
Sbjct: 480 LADGQRLQQVLKNLLANAVKFTEHGSVALCIEGHGEGRIRFAVSDTGIGIAREQTEVIFE 539

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F        RR  G GLGL+I        GG +++ S
Sbjct: 540 AFRQADGSTSRRFGGTGLGLAISRDLAERMGGSLTVES 577


>gi|37521628|ref|NP_925005.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212626|dbj|BAC90000.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 682

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 11/243 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE A  E  EA R    IK+ F+  +S+ELR+PL  IIGFT LL+  +L   ++ ++  +
Sbjct: 349 AESARQEAEEANR----IKDEFLATLSHELRTPLNPIIGFTQLLRKGQLDEASAARA--L 402

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  ++     ++ D+LDL+ +  G ++L    + L  ++ +   ++       NI ++
Sbjct: 403 ETIERNARAQSRIIEDMLDLSRIITGKLRLEVRPVALATVVEDALDTVRFAAQSKNIELR 462

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              D  +     D  RL Q+   +LSNA+ F+ +  ++ ++  R   + + +V+++G  I
Sbjct: 463 ARLDPNVVLPFGDSNRLRQVVWNLLSNAIKFTPENGSIEVQLERGRAEAVLTVRDSGVGI 522

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS--SDEGVTTINC 786
             D    VF RF        R   G+GLGL+IV   + LHGG V + S  SD+G  T   
Sbjct: 523 AGDFLPHVFERFRQANSTTTRSHGGLGLGLAIVRQLVELHGGTVGVESPGSDQG-ATFTV 581

Query: 787 RIP 789
           R+P
Sbjct: 582 RLP 584


>gi|317476223|ref|ZP_07935474.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907634|gb|EFV29337.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 294

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 138/256 (53%), Gaps = 10/256 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F++++ S   + AL   NE   ++ +++N+F+ ++++E+R+PL  I+GFT +L  ++
Sbjct: 37  IMIFISISKSKHVQ-ALKRMNEVAEESRQLQNAFIANMTHEIRTPLNVIVGFTTIL--AE 93

Query: 599 LGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             +L+ +Q   +++ I+ +  +LL LVND+LD + ++A  M+ N   + +N L+ E    
Sbjct: 94  TDNLDKEQRVAFLKEINENKDVLLQLVNDLLDYSKIEANTMEYNDGEVDVNALILET--C 151

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           IA   H     I+ + +          DR R  Q+   ++ NA+ F+ +G   +      
Sbjct: 152 IAENAHSRLPGIQAEFVEKLPQCRLRIDRVRFGQVVGNLIRNALKFTEQGCVKVGCRRLS 211

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           N +F F V + G  I E+  +++F RFV   +    RG GLGLSI +S I  +GG + + 
Sbjct: 212 NQNFYFYVADTGCGIEEESRRAIFERFVKMNY--NIRGTGLGLSICKSIIEHYGGGIGVE 269

Query: 776 SSDEGVTTINCRIPSK 791
           S     +T    +PSK
Sbjct: 270 SKKGEGSTFYFTLPSK 285


>gi|420780|pir||A46414 histidine protein kinase divJ - Caulobacter crescentus
          Length = 596

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+ ++S+ELR+PL  I+GF+D+++    G L+ + ++Y E I  S   LL+L+ND+L
Sbjct: 328 RARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVL 387

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687
           D++ ++A   +L        + +    + +  +     ++++ V+  G+L    ADR+ L
Sbjct: 388 DMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGEL-EVDADRRAL 446

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746
            QI   ++SNA+ F+ +G  V + A   +G     V + G  I PED+ +    R    A
Sbjct: 447 KQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDLER--LGRPYEQA 504

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++  RG GLGLS+V +F  L GG + I S     TT++ R+P
Sbjct: 505 GGAEQRARGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSVRLP 549


>gi|163845790|ref|YP_001633834.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523498|ref|YP_002567968.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667079|gb|ABY33445.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447377|gb|ACM51643.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 762

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 126/233 (54%), Gaps = 4/233 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E +++AD +K  F+  VS+ELR+PLT IIG+TD+L+   LG L+ +  + + Y+  +S  
Sbjct: 517 EEVQRADRLKTGFLATVSHELRTPLTTIIGYTDMLRRGVLGELSPEVQETLHYMRQASLN 576

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ L++DIL+ + ++AG + ++   + ++ ++  V   +  ++ E+ + + V     L  
Sbjct: 577 LMRLISDILEFSRMEAGQLIIDIEPVPVSVIVQNVVGQMQPQIREHQLHLMVNIPPDLPM 636

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
             A+  RL Q+   +LSNA+ F+     + +K A   G+++  SV++ G  I     + +
Sbjct: 637 IQANAGRLEQVLINLLSNAIKFNRPQGLIEIK-AETRGEWVRISVRDTGIGIAPADQERI 695

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F  V   +     GVGLGL+I    I   GG + + S+    +T  C +P
Sbjct: 696 FEEFERVKQKNGHSVSGVGLGLAICRRLIQHMGGKIGVKSTPGEGSTFFCDLP 748


>gi|327440461|dbj|BAK16826.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 938

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K+  V  VS+ELR+PL++++GFT+LL   ++     +Q +Y+E I   +  L NL
Sbjct: 575 EVDMMKSELVSTVSHELRTPLSSVLGFTELLLAKEIKP--ERQKKYIETIHKEAKRLTNL 632

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND LD+  +++G    + + I L  L+ +V ++       N   I+ + +       AD
Sbjct: 633 INDFLDIQRIESGQQVYSMNKISLTALIEDVLKNFQIDPQHN---IRFVDESTNAIVSAD 689

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
            +R++Q+   ++ NA+ FS  G  +I++    N     S+++ G  IPE    S+F +F 
Sbjct: 690 EERIIQLLFNLIGNAIKFSPNGGEIIIRMQNINETVQVSIQDCGIGIPESAIPSLFQKFK 749

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            V N+ R +  G GLGL++ +  I+ H G + +  S+EG+ TTI   +P
Sbjct: 750 RVDNSSRRKIGGTGLGLALSKEIISKHKGDIWL-ESEEGIGTTIFFTLP 797


>gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 589

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +   V +VS+ELR+PLT+I GF + +    + S    Q  Y++ I   +  L  L+ ++L
Sbjct: 362 RRDLVANVSHELRTPLTSIRGFIEAILDGTI-SDPEAQRHYLKVIHQETVRLTRLIRELL 420

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA ++AG +      I +++L++ V   +  ++ ++ I +KV     L   +A+  R+ 
Sbjct: 421 DLAQMEAGKIVWELHPIEVSELVSRVLFKLGPQLEQHQISVKVDISQSLPLMLANEDRME 480

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+ + ++ NA+ +S  G TV +KA  DNG     V + G  IPE+    +++RF  V  +
Sbjct: 481 QVLTNLVENAIRYSPPGKTVTVKAGSDNGLVQIEVSDEGPGIPEEDLPYIWDRFHRVEKS 540

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGL+IV+  +  HGG V + S     +T    IP+
Sbjct: 541 RSRSLGGTGLGLAIVKQIVEAHGGKVGVHSQPGQGSTFFFSIPA 584


>gi|256851856|ref|ZP_05557244.1| two-component system histidine kinase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661883|ref|ZP_05862793.1| two-component system histidine kinase [Lactobacillus jensenii
           115-3-CHN]
 gi|282931966|ref|ZP_06337430.1| two-component system histidine kinase [Lactobacillus jensenii
           208-1]
 gi|256615814|gb|EEU21003.1| two-component system histidine kinase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547352|gb|EEX23332.1| two-component system histidine kinase [Lactobacillus jensenii
           115-3-CHN]
 gi|281303908|gb|EFA96046.1| two-component system histidine kinase [Lactobacillus jensenii
           208-1]
          Length = 387

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ K+  + +VS+++R+PLT+IIG+  LLK     SL + Q +YV+     +  +  
Sbjct: 148 RQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKAD--NSLTADQLKYVDIAYNKAGQMKA 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ D  T+++   K+N + + L  +L +V      +  E NI + V +        A
Sbjct: 206 LANDLFDYTTLNSTKTKVNMAPLHLTSMLEQVAAGFELEAEEKNISLNVNTKPDDLVIDA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++F+ ++SNA+ +    S + L A +   + +   V+N+G +IP++  + +F R
Sbjct: 266 DAEKLVRVFNNLISNALKYGHGASFINLSAKKIKANLVEIRVENDGEAIPKEALQKIFER 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  V  +   +  G GLGL+IV+  I+LH G ++  S+D+ +T+    +P K
Sbjct: 326 FYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKITCESNDQ-LTSFIIHLPFK 376


>gi|170741016|ref|YP_001769671.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168195290|gb|ACA17237.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 927

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 165/356 (46%), Gaps = 9/356 (2%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDL 499
           + EG A++  D R+ ++N  +  +   +    + G     +    +   +ESD     D 
Sbjct: 280 MQEGFALYDRDDRLVMANARYSEMLMGQSAAAAMGLPFETLIQQVAARRDESDAEADLDH 339

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I     + R+S   T   +    L+ +     +  T+   +++TD  + E  L +  
Sbjct: 340 DAWIAQRLAEHRRSGSTTETRVRGRWLQIAKHRTHDGGTVTLVMDITDLKQREIELDQAR 399

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               +A+++K+ F+ ++S+ELR+PL  IIG++ +L+       N      +  I  +   
Sbjct: 400 AEAERANQVKSEFLANMSHELRTPLNAIIGYSQMLREDAADDGNDGAVADLTKIEGAGKH 459

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+NDILDL+ ++AG M +    I + +LL +V+  I      N+ R+ V        
Sbjct: 460 LLDLINDILDLSKIEAGKMDVFLEEINIPELLEDVRLLIEPVAARNDNRLVVACAAGASR 519

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCK 736
            V D  +L Q    +LSNA  F +KG  + L    D    G+  F+V + G  +  +   
Sbjct: 520 MVTDVTKLKQSLLNLLSNAAKF-TKGGLLTLSVDPDPDRAGNLCFAVSDTGIGLSPEQVG 578

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F  F    +   R+  G GLGL+I  SF  + GG ++++S+    +T    +P+
Sbjct: 579 RLFQAFQQADNSTTRKFGGTGLGLAITRSFARMLGGDIAVTSALGAGSTFVITLPA 634


>gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 1098

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 129/245 (52%), Gaps = 6/245 (2%)

Query: 550 RAERALTEKN----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +AE+ + + N    E L+K D++K+ F+   S+ELR+PL  +IG  + +     G +   
Sbjct: 406 QAEQEVIKSNLRALENLKKTDKLKDEFLAMTSHELRTPLHGMIGIAETMYDGATGKMTQS 465

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +++  I +S   L +L+NDILD + +    M L+   + L +L++ V     + ++E 
Sbjct: 466 MKKHLSMIISSGKRLSHLINDILDFSILKNDAMNLHLKKVHLKELVDVVIIMSQSLLNEK 525

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NIRI    D  +   + D  RL Q+F  ++ NA+ ++ +G TV++ A  D       + +
Sbjct: 526 NIRIINEIDTNIRPVLGDENRLQQVFFNLIGNAIKYTERG-TVVISAEEDGKMLQVHITD 584

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +G  I  D   ++F+ F    +  + + G GLGL+I +  I  HGG++S+ S +   +T 
Sbjct: 585 SGIGISADQIDTIFDAFNRGGNNSEEQSGTGLGLNITKKLIEAHGGNISVVSQEGKGSTF 644

Query: 785 NCRIP 789
           +  IP
Sbjct: 645 SFLIP 649



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 120/257 (46%), Gaps = 39/257 (15%)

Query: 554  ALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            AL E N+ L KA+E        +   + ++S+E  +P+T +  +   +++ + G + +  
Sbjct: 850  ALKEVNDELLKANEDLIKLQNARTHMLSNISHEFGTPVTFLQSY---IQSVRAGIIEAND 906

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM---- 662
            + Y++ +     +L  L+ D+ D++ +++G + L      L++ +N++     T +    
Sbjct: 907  AHYLKSVENKVNMLNRLIEDLYDISKLESGDITLMTKERNLHEWINQMYDKFETDVTRRK 966

Query: 663  -----------HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                        E +IRI +           D  R+ Q+F+ I+ NA+  +++G  + + 
Sbjct: 967  ITLHKPVFTGNEEQDIRIDI-----------DNDRMDQVFTNIIYNAIKHTNEGGDIWIN 1015

Query: 712  AA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHG 769
               +D  + +  +K+NG  I E     VF RF         + G GLGL+I +  I+ H 
Sbjct: 1016 VVVKDRQEVMIEIKDNGHGIKESDLPFVFERFFKGEKVINGKIGTGLGLAISKEIIHHHN 1075

Query: 770  GHVSISSSDEGVTTINC 786
            G +S+ S+ EG   I C
Sbjct: 1076 GEISVKST-EGNGAIFC 1091


>gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1142

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K + L ++   K+ F+ ++S+ELR+PL +I+  + +L  +K   LN ++ +Y   I  S 
Sbjct: 477 KADELERSGRFKSEFLANMSHELRTPLNSILILSRILGENKGARLNEEEQRYASVIYNSG 536

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+NDILDLA V+AG ++L +  I    LL EV+ +         + + V   G  
Sbjct: 537 NDLLTLINDILDLAKVEAGKIELVHEHISTESLLVEVRNTFQKIAENKGLELAVEKTGSC 596

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
               + D  RLLQI   ++SNA+ F+S    V L  +  +G   F V + G  IP +   
Sbjct: 597 PDMLLTDHTRLLQILRNLISNAVKFTSAPGRVSLTISEADGYLHFEVADTGIGIPLEKQA 656

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           S+F  F        R+  G GLGLSI     +L  G +S+ S+    +    +IP
Sbjct: 657 SIFEAFQQADGSTSRKYGGTGLGLSISRELASLFNGSISLRSTPGEGSVFTLKIP 711


>gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1200

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 129/234 (55%), Gaps = 12/234 (5%)

Query: 555 LTEKN-EALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L EKN E L+KA+E+      K+ F+ ++S+ELR+PL +I+  + LL  +   +L S+Q 
Sbjct: 507 LEEKNLEILKKAEELELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENDDKNLTSEQI 566

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I +S   LL L+++ILDL+ ++AG M+L+Y  + + ++ +++K   A    E  +
Sbjct: 567 EYATVIQSSGNGLLGLIDEILDLSKIEAGKMELDYVPVSVKEICDDMKGLFAPVAREKGL 626

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVK 724
              V I +G       D+ R+ QI   ++SNA+ F+S+GS  I    ++  D    F V+
Sbjct: 627 DFSVAIGNGVPPVIETDKMRMEQILKNLVSNALKFTSQGSVGITVKLQEGNDRMLCFVVR 686

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  +  +  + +F  F       +R+  G GLGLSI      L GG +S++S
Sbjct: 687 DTGIGVAPEKQQHIFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEISLTS 740


>gi|298529548|ref|ZP_07016951.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510984|gb|EFI34887.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1065

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 11/257 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+ TD ++  + L +  E    A++ K+ F+  +S+E+R+P+  I+G   L++ +   + 
Sbjct: 668 VDNTDLLQTRQQLYQAKEQAVAANQAKSHFLATMSHEIRTPINGIMGLMQLMQDT---TQ 724

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q +YV+    S+  L  L++DILDL+ V+AG M +        DL   V +      
Sbjct: 725 DREQQEYVDLALTSAQRLTRLLSDILDLSRVEAGKMTIQEEKFSPRDLAGSVAELFKVTA 784

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDN 716
            +  + ++ I D G  G  + D  R+ QI   ++ NA+ +S  G+     T +     ++
Sbjct: 785 KDRGVSLECILDPGLPGEIIGDPARVRQILFNLVGNAVKYSEHGNVNLHMTPVPAGRNED 844

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +F V + G  IPED  K++F+ FV   +    + +G GLGL+I+     L GG++SI
Sbjct: 845 IRVLFIVSDTGIGIPEDRIKTLFDPFVQVEDYQTRKHQGAGLGLAIIRRLTQLMGGNISI 904

Query: 775 SSSDEGVTTINCRIPSK 791
            S++   T +   +P K
Sbjct: 905 DSTEGEGTAVYVALPFK 921


>gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1002

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 132/249 (53%), Gaps = 10/249 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S +++  L EK      A+  K+ F+  +S+ELR+PL  I+GFT ++  ++  SL+S+Q 
Sbjct: 509 SKQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMM--NRDSSLSSQQQ 566

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I+ S   LL+L+ND+L+++ ++AG + LN +   L++L+  VK+ +  K     +
Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------ 720
            + V  D +L  ++  D  +L QI   ++ NA+ F+  G   +  +   +  +       
Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQ 686

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDE 779
             VK+ G  I +D  +++F  F    +  Q + G GLGLSI   F  L GG +++ S   
Sbjct: 687 LEVKDTGIGINQDELETIFEAFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLG 746

Query: 780 GVTTINCRI 788
             +T  C I
Sbjct: 747 QGSTFTCTI 755


>gi|154490237|ref|ZP_02030498.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
 gi|154089129|gb|EDN88173.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 135/250 (54%), Gaps = 6/250 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ +    E  L E       AD++K+ ++  +S+E+R+PL  I GF++L+        
Sbjct: 317 INIQERKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADS 373

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++ +Y E I  ++ +L+ L+NDILDL+ ++A  ++++Y  + +N L++ +  SI  +M
Sbjct: 374 DEERREYYEIIKTNNLLLMQLINDILDLSKIEADAIRISYEPVDINGLMDTIFASIKLRM 433

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  +++ +        F AD  RLLQ+ + + +NA+  + +GS  +      +    F 
Sbjct: 434 PE-GVQLFLEKGSCTCCFGADSIRLLQLINNLANNAIKNTKQGSITLGYTCLPDKCLEFY 492

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           VK+ G+ I +D  +S+F RFV      +  G+GLGL+I +  +   GG + + S     +
Sbjct: 493 VKDTGTGIAKDKLESLFTRFVKVNDYVE--GIGLGLAICQGLVTKMGGSMHVESELGVGS 550

Query: 783 TINCRIPSKE 792
           T +  +PS E
Sbjct: 551 TFSFVLPSHE 560


>gi|7272187|gb|AAA23034.2| histidine protein kinase [Caulobacter crescentus CB15]
          Length = 597

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+ ++S+ELR+PL  I+GF+D+++    G L+ + ++Y E I  S   LL+L+ND+L
Sbjct: 329 RARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDVL 388

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687
           D++ ++A   +L        + +    + +  +     ++++ V+  G+L    ADR+ L
Sbjct: 389 DMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGEL-EVDADRRAL 447

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNA 746
            QI   ++SNA+ F+ +G  V + A   +G     V + G  I PED+ +    R    A
Sbjct: 448 KQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDLER--LGRPYEQA 505

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++  RG GLGLS+V +F  L GG + I S     TT++ R+P
Sbjct: 506 GGAEQRARGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSVRLP 550


>gi|256424541|ref|YP_003125194.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256039449|gb|ACU62993.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1203

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 131/243 (53%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +K E L  + + K+ F+ ++S+ELR+PL +I+  + L+  +   +L+  Q +  + I 
Sbjct: 516 IQKKAEELEISTKYKSEFLANMSHELRTPLNSILLLSRLMAENNEKNLSDDQIESAQVIQ 575

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN--IRIKVI 672
           +S   LLNL+++ILDL+ ++AG M L Y+ + ++++ N+++        E N  + ++V+
Sbjct: 576 SSGKGLLNLIDEILDLSKIEAGKMDLEYAPVPVHEICNDMEALFGPIAREKNLALNVQVM 635

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSI 730
           SD        D+ RL QI   +LSNA+ F++KG+    +   A+D     F+V++ G  I
Sbjct: 636 SDAP-ALIETDKMRLEQILKNLLSNALKFTAKGAVTLQVTAVAQDPSIVRFAVRDTGIGI 694

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS----SDEGVTTI 784
           P +  + +F  F     + R +  G GLGLSI      L GG + + S      E V TI
Sbjct: 695 PVEKQQVIFEAFKQADGSTRRKYGGTGLGLSISRELAKLLGGEIRLESEPGHGSEFVVTI 754

Query: 785 NCR 787
             R
Sbjct: 755 PLR 757


>gi|146309325|ref|YP_001189790.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
 gi|145577526|gb|ABP87058.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
          Length = 1291

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 9/227 (3%)

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +KN FV  VS+ELR+PLT I G   L+    LG++     Q +    ++S  L  L+ND+
Sbjct: 1064 MKNEFVSTVSHELRTPLTAIAGSLGLINGGALGAVPDNMRQMLAIAHSNSQRLSALINDL 1123

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            LD+  + AG M  +     L  LL +  +      + H+  +R++V  D ++     D Q
Sbjct: 1124 LDMDKLVAGKMHFDLQARTLQPLLEQALLHNQPYAEQHQVELRLQVEDDAQV---RVDAQ 1180

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            RL Q+ + +LSNA  FS  G+ V ++          SV ++G  IPE     +F++F S 
Sbjct: 1181 RLAQVMANLLSNAAKFSPPGTCVDVRLQHGGEVLRVSVTDSGPGIPEAFKPRIFSKF-SQ 1239

Query: 746  AHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A  G   Q+ G GLGL+I +  I   GGH+   SS     T    +P
Sbjct: 1240 ADSGDTRQQGGTGLGLAICKEIIERMGGHIGFDSSPGQGATFWFELP 1286


>gi|42525106|ref|NP_970486.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
 gi|39577317|emb|CAE81140.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
          Length = 449

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 133/242 (54%), Gaps = 7/242 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E   +   IK++F+ ++S+E+R+PL +IIGF+D+L+ ++   L+  Q+ YV+ I 
Sbjct: 210 LVQAREEALQLSSIKSTFLSNMSHEIRTPLNSIIGFSDILRDTR---LDKDQTDYVQTIQ 266

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  LL+++ND+LD++ ++ G+++++     + +L  ++ +    K  E N++++V  D
Sbjct: 267 RCSDSLLHIINDVLDISKIENGLLQIDRHKFDVKELHTDIFKIFEAKCQEKNLQLEVDID 326

Query: 675 GKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPE 732
             + +F + D  RL QI   ++ NA+ F+ KG   I L+    +G +++ V + G  I  
Sbjct: 327 ESIPAFALGDSHRLRQILMNLVGNAVKFTDKGRVCISLQRQPGSGHYVWKVSDTGRGIRL 386

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F  F        R   G GLGL I ++ + + GG + + S     TT +  +P 
Sbjct: 387 ENMSKLFRSFSQEDVSISRTYGGSGLGLMICKNLVEMMGGDIKVESKLGEGTTFHFTLPL 446

Query: 791 KE 792
           +E
Sbjct: 447 EE 448


>gi|327189383|gb|EGE56551.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 511

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++    +G L N    
Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI
Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I    + +L +  AD + + Q+   +LSNA+ F+ +G  + +K       G +I S+K+
Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S     T 
Sbjct: 421 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480

Query: 784 INCRIPSK 791
           +   +P+K
Sbjct: 481 VIAILPAK 488


>gi|254489970|ref|ZP_05103165.1| hypothetical protein MDMS009_301 [Methylophaga thiooxidans DMS010]
 gi|224465055|gb|EEF81309.1| hypothetical protein MDMS009_301 [Methylophaga thiooxydans DMS010]
          Length = 1177

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 134/250 (53%), Gaps = 12/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E     KNEA+ +A  +K+ FV +VS+E+R+PL  I+G  +LLK     +LN KQ  Y
Sbjct: 502 RTEELEKAKNEAI-EASNMKSGFVANVSHEIRTPLNGILGMHNLLKRE---NLNEKQESY 557

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++  + S+  LL L+NDILDL+ ++AG +++    I L D  ++   S+A +  + N+ I
Sbjct: 558 LQMATQSAKSLLMLINDILDLSKIEAGKLEIESLPINLIDSFSQAANSMAVRAMDKNVEI 617

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIF---SV 723
            + ++D K    + D  R+ QI + ++SNA+ F+ KG  ++  A  ++  G  +    SV
Sbjct: 618 VLDLADIKHTVVIGDDLRIRQILNNLISNAIKFTDKGEIIVSAATTEDVAGARVILDVSV 677

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +     +F  F        R+  G GLGLSIV +  +L  G   + S     
Sbjct: 678 QDTGVGIDKAKLNQLFKAFSQEDSSTTRKYGGTGLGLSIVSNLCSLMNGECHVESEKNVG 737

Query: 782 TTINCRIPSK 791
           +T + R+  K
Sbjct: 738 STFSFRLSLK 747


>gi|209523365|ref|ZP_03271920.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
 gi|209496107|gb|EDZ96407.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
          Length = 1010

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            R  +++KN F+  VS+ELR+PLT I G   LL +        +  ++++     +  L+ 
Sbjct: 774  RAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIQIALLETERLVR 833

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVNDILD+  +++G ++         DL+ +V +S+    H+++I ++++         A
Sbjct: 834  LVNDILDIERLNSGQVEFQMEACSAQDLMTQVVKSLQAIAHQDSITLEILPTSL--QLWA 891

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            +R  +LQ  + ++ NA+ FS   +TV L A   +   +F V++ G  IP +  +++F+RF
Sbjct: 892  ERDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEQLETIFSRF 951

Query: 743  --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              V  +   Q+ G GLGLSI +S I  HGG + + S     +T    IP
Sbjct: 952  QQVDASDSRQKGGTGLGLSICQSIIQQHGGKIWVESQLAKGSTFYFTIP 1000


>gi|171060213|ref|YP_001792562.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777658|gb|ACB35797.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1603

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 122/571 (21%), Positives = 243/571 (42%), Gaps = 60/571 (10%)

Query: 239  ESRKLFKEEIKKRMISSSALEKNFCETVSTLEH------GNNK--SYKIVRVLNSFGEAG 290
            ESR L ++ +++ + +    +     T +  +H      G  +    + VR+L +  E  
Sbjct: 520  ESRPLLEQAVQRSIATGEGYDMELPFTTAGGQHIWVRAVGETEFVGDQAVRMLGTLQEVT 579

Query: 291  IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATN 349
               ++  E+  N+++  +  +L NL   +++FD +  L   N  F  L ++ D  F    
Sbjct: 580  ARRELESELRRNNEVLAS--VLENLPCGLSVFDADGLLVAANAQFRSLLDLPDRLFEGPV 637

Query: 350  PSNDELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSN 407
               ++++          P+ +  K     I    +S    H+     P+G +L +     
Sbjct: 638  TRFEDIIRHNAEHGEYGPDDIEAKI--RTIVDRARSPVVQHQFERVRPDGTSLEIRGGPL 695

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            P GG +  + +++ +   E +     ++    ID + E   ++ PD R+   N  +R ++
Sbjct: 696  PAGGFVTTYTDISARRKAEAEVQRSAQLLRGAIDTIDEAFVLYDPDDRLVFCNDKYRRIY 755

Query: 468  KTEENRLSPGTHIRNI---AATCSRYYN---ESDGW--DLFAA-------IITSFDDERK 512
                + + PGT    I    A   +Y +     D W  +  AA       ++ + DD R 
Sbjct: 756  AASADLIVPGTTFEEIVRKGAERGQYVDAIGRVDDWVAERMAAHRAGNAPLVQALDDGR- 814

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                TL ++           +P+  T+   +++T+            EA   A   K+ F
Sbjct: 815  ----TLRIVERR--------MPDGHTVGFRIDITE-------FQRAREAAEAASRAKSEF 855

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            + ++S+E+R+P+  I+G   LL  ++L     +Q+ YV     ++  LL L+NDILD + 
Sbjct: 856  LANMSHEIRTPMNAILGMLALLHKTELA---PRQADYVAKTEGAARSLLRLLNDILDFSK 912

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
             +A  M L      ++ LL ++   ++  +    + +    D  L  + V D  RL Q+ 
Sbjct: 913  AEAERMVLEARPFRIDQLLRDLSVILSANIGGKEVEVLFDIDPTLPRALVGDAMRLQQVL 972

Query: 692  SKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
              +  NA+ F+++G  V+  A R+          +V++ G  I  +    +F+ F     
Sbjct: 973  INLGGNAIKFTAEGEVVVSVAVRERSALGVTLQIAVRDTGIGIAAENQARIFSAFTQAEA 1032

Query: 748  RGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLG++I +  + L GG + ++S
Sbjct: 1033 STTRRFGGTGLGVAISQRLVALMGGELQVAS 1063


>gi|159029098|emb|CAO90087.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 671

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 131/233 (56%), Gaps = 10/233 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ L E  EA  KA++ K+ F+ ++S+ELR+PL  I+GFT L+  S+  S++S+  QY+
Sbjct: 191 AEKELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLI--SRDSSISSEYRQYL 248

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E ++ S   LL L+NDIL+++ ++AG    N S   L  LL+ + + + ++     + + 
Sbjct: 249 EIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKALSLI 308

Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDF---IFSVKN 725
                 L  ++  D  +L Q+   +L N + F+ S G T+ +K      D+   ++ +++
Sbjct: 309 FDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDYQRLLWEIED 368

Query: 726 NGSSI-PEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  I PE++ K +F  F  +   R  ++G GLGL I + F+ L GG + +SS
Sbjct: 369 TGLGIAPEEIYK-LFQPFNQTETGRKSQQGTGLGLPISKKFVELMGGAIGVSS 420


>gi|86358053|ref|YP_469945.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86282155|gb|ABC91218.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 513

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++    +G L N    
Sbjct: 244 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 303

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI
Sbjct: 304 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 363

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I    + +L +  AD + + Q+   +LSNA+ F+ +G  + +K       G +I S+K+
Sbjct: 364 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 422

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S     T 
Sbjct: 423 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 482

Query: 784 INCRIPSK 791
           +   +P+K
Sbjct: 483 VIAILPAK 490


>gi|113477259|ref|YP_723320.1| histidine kinase [Trichodesmium erythraeum IMS101]
 gi|110168307|gb|ABG52847.1| histidine kinase [Trichodesmium erythraeum IMS101]
          Length = 1121

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 127/256 (49%), Gaps = 15/256 (5%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T++   +VT      + L +KN  L + + +K+ F+  +S+EL++PLT ++G + LLK  
Sbjct: 338 TLVLAQDVTKQHLVAKELQDKNTDLIRLNRLKDEFLACISHELKTPLTAVLGLSSLLKDQ 397

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            LG+LN +Q+ Y   I  S   L+ ++NDILDL  ++ G M+L    + +  + +   Q 
Sbjct: 398 TLGALNKRQTHYATLIHQSGRHLMAVINDILDLTRMETGQMELIPEPVEIRKVCDRAFQE 457

Query: 658 IATKMHE-----------NNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
                H+           ++IR K     +  L   +AD  RL Q+   +LSNA+ F+  
Sbjct: 458 ALQLQHKRPQGQSSAIFSDSIRAKYTLEIEKDLDIIIADELRLRQMLVNLLSNALKFTPI 517

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
              + LK AR      F+V + G  IP +    +F +F  + N    +  G GLGL + +
Sbjct: 518 DGKMGLKVARWEKWITFTVWDFGIGIPANKQHLIFQKFQQLENPLIREFEGTGLGLVLTQ 577

Query: 763 SFINLHGGHVSISSSD 778
               LHGG V+  S +
Sbjct: 578 RLARLHGGDVTFISQE 593


>gi|167574056|ref|ZP_02366930.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis C6786]
          Length = 764

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 17/263 (6%)

Query: 540 LTFVNVTDSVRAER----ALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592
           LT  +  +  R ER    +L    +A R+AD    +K+  +  VS+ELR+PL  I G+ +
Sbjct: 359 LTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIE 418

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L  ++N
Sbjct: 419 VLRNPAGGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +V  ++ T      + + V  D  L + +   D +RL Q+ S +LSNA  F+ +G  V +
Sbjct: 476 DVTGALGTAAQAEGLDLTV--DCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRVTV 533

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
              R +      V + G  I  +    VF  F     +    RRG+GLGLSIV     LH
Sbjct: 534 SLMRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIAELH 593

Query: 769 GGHVSISSSDEGV-TTINCRIPS 790
           GG V ++S+ + + TT    +P+
Sbjct: 594 GGKVEVASAGKRLGTTFTVTLPA 616


>gi|94986195|ref|YP_605559.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94556476|gb|ABF46390.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 1140

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 125/255 (49%), Gaps = 14/255 (5%)

Query: 544 NVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            VT +++   A  E   + EAL + D  K +F  + S+ELR+PLT ++G  + L T   G
Sbjct: 323 QVTAALKGANAYEEERRRAEALAELDRAKTAFFANASHELRTPLTLMLGPLEDLLTGDAG 382

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q + +E     S  LL LVN +LD + ++AG  + +Y    L  +  ++  S  +
Sbjct: 383 PLTARQQEVLEMAHRGSLRLLRLVNTLLDFSRLEAGRAQASYVPTDLATVTADLASSFRS 442

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            M    +R  V           D +   ++   +LSNA  F+  G  V +  A++  + +
Sbjct: 443 AMERAGLRYGVEVSPLSEPVYVDPEMWEKVVLNLLSNAFKFTLSGE-VAVTLAQEGREAV 501

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR----RGVGLGLSIVESFINLHGGHVSI 774
             V+++G  IP      +F RF    HR  GQR     G G+GL++V   + LHGG V +
Sbjct: 502 LRVRDSGVGIPAAELGRLFERF----HRVEGQRGRSFEGTGIGLALVREIVALHGGRVEV 557

Query: 775 SSSDEGVTTINCRIP 789
            S++   TT   R+P
Sbjct: 558 QSAEGQGTTFTVRLP 572



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 8/250 (3%)

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            M+ FV +VT+  RAE AL + NE L +++     F    S++L+ P+  +  F  LL   
Sbjct: 888  MVGFVRDVTERKRAETALRQANEELSRSNAELERFAYIASHDLQEPIRTVGSFAGLLARR 947

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                L+ +  QY+  +   +  +  LV+D+L  + ++A      +  + LN  ++E    
Sbjct: 948  YGDVLDERGRQYLHTVELGALRMKTLVDDLLVFSRLNAA--HPPFQLLDLNVPVHEALAR 1005

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARD 715
            +   + E   R+ V   G L +   D  RL Q+F  +++NA+ F  +G    V + AAR 
Sbjct: 1006 LDMTLQETGARVTV---GDLPTVYGDPSRLAQLFQNLIANAVKFRREGVPPEVTIGAARA 1062

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +  +V +NG  I +     +F  F     R +  G GLGL+I +  +  HGG + + 
Sbjct: 1063 GNLWHLTVSDNGIGIEQAYFTRIFEMFQRLHSRDRYEGSGLGLAICQKIVAQHGGQMWVE 1122

Query: 776  SSDEGVTTIN 785
            S+    +T +
Sbjct: 1123 STPGAGSTFH 1132


>gi|83591406|ref|YP_425158.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574320|gb|ABC20871.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 773

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 167/365 (45%), Gaps = 22/365 (6%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYY----- 491
           E  + +S  + +F P G + L N A R+     E+ L PG + I   AA  +R       
Sbjct: 412 EATELMSAAMLLFDPQGILVLINSACRAALPDLEDILHPGLSFIELRAAIVARRLFVQAI 471

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            ES G  +          E +   G   L+  S          +  T++   ++T+  R 
Sbjct: 472 TESQG-GIKGGTPGPAPIEVRGKDGRWLLIRQSATS-------SGYTLILGTDITELKRR 523

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERAL +  E    A+  K+ F+ ++S+ELR+PL  IIGF+D+ +    G L++    YV+
Sbjct: 524 ERALADAKEVAEYANRAKSEFLANMSHELRTPLNAIIGFSDITRHQMFGRLDNPV--YVD 581

Query: 612 Y---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  S T LL +++DILDLA ++AG + L+   +    L++   Q +  +     I 
Sbjct: 582 YARNIYDSGTHLLEIISDILDLAKIEAGELGLDEEEVDAARLVDSAIQMVTPRATSKRIA 641

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNG 727
           +  +  G L     D  RL Q+   +LSNA+ ++ +   V + A    GD    SV + G
Sbjct: 642 LTNLLTGDLPRLWCDPLRLKQVLINLLSNAVKYTQEDGAVAVTARLAGGDGLAISVIDTG 701

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + E   +     F  V + +  ++ G GLGL +       H G ++I+S     TT+ 
Sbjct: 702 IGMDEAGIQVAMTAFGQVESPYSRRQGGTGLGLPLTRKLTEAHQGCLTIASRPGEGTTVT 761

Query: 786 CRIPS 790
             +P+
Sbjct: 762 ILLPA 766


>gi|153807682|ref|ZP_01960350.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185]
 gi|149130044|gb|EDM21256.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185]
          Length = 631

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 127/243 (52%), Gaps = 8/243 (3%)

Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A +  +EA+ KA++   +K++F+ ++S+E+R+PL  I+GF+++L          +  +Y
Sbjct: 393 KAYSRSSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPEV---DDREEMREY 449

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILD++ ++AG      + I +N  + E++QS+  ++  + +  
Sbjct: 450 TDIIETNTNLLLQLINDILDMSKIEAGTFDFCPALIDVNQTMEEIEQSMQLRLKNDAVTF 509

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                        D+ RL+Q+ S  + NA+ F+  GS  +    +D     F V + G  
Sbjct: 510 TFCERLPECMLYIDKNRLMQLLSNFIVNAIKFTKSGSIRMGYRMKDINTIYFYVSDTGCG 569

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C+ VF RFV   +    +G GLGLSI    +    G + ++S +   +T    +P
Sbjct: 570 MSPEQCRHVFERFVK--YNPFIQGTGLGLSICHMIVEHLKGEIGVNSEEGKGSTFWFTLP 627

Query: 790 SKE 792
            ++
Sbjct: 628 YRK 630


>gi|22651420|gb|AAL13332.1| bZIP histidine kinase [Pseudomonas mendocina]
          Length = 973

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 23/283 (8%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EALRKADEIKNSF 572
            +++S++P+ + Q  + F+     N+TD  +AE  L  KN       E +RK D  K+ F
Sbjct: 125 AVDFSLLPIRDEQENIVFLLAEGRNITDKKKAEAMLALKNHELEQLVERIRKLDNAKSDF 184

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
              VS+ELR+PL+ I+G  + +  ++ G   S   +  E I  ++  LL  VN +LDLA 
Sbjct: 185 FAKVSHELRTPLSLILGPLETIMEAESGR-GSPYWKKFEVIQRNAMTLLKQVNTLLDLAK 243

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQ 689
           +DA  M L+Y    L+ L   +  +      + +I +    D +L   +    D ++  +
Sbjct: 244 MDAQQMGLSYRRADLSQLTRVISSNFDGIAQQKSITL----DAELPPHLIAEVDCEKYER 299

Query: 690 IFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           I   +LSNA  F+  G  +    +       + +V ++G  IP+++ K +F RF      
Sbjct: 300 IILNLLSNAFKFTPDGGLIRCHLSLSQPAHALITVSDSGPGIPQNLRKEIFERFHQLNQE 359

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GQ+  +G GLGLSIV+ F+ LH G +S+S +  G      ++P
Sbjct: 360 GQQANQGTGLGLSIVKEFVELHHGTISVSDAPGGGALFQVKLP 402



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 10/133 (7%)

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDN 716
             N + + VI+   L + + D  ++ Q+   +  N+++  S+      + A        N
Sbjct: 843 QSNGVSLNVIAGDTLPAIMGDAVQIQQLVINLAMNSIEAMSQVGCETRQLALSFSSNASN 902

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              I  VK+ G  IPED    +FN F +     ++ G+G+GL+I  +   +H G +   S
Sbjct: 903 DALIICVKDTGPGIPEDQIGQLFNAFYTT----KKEGLGMGLAICLTIAEVHNGKIWAES 958

Query: 777 SDEGVTTINCRIP 789
              G       IP
Sbjct: 959 PPAGGACFFVSIP 971


>gi|167625908|ref|YP_001676202.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167355930|gb|ABZ78543.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 885

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 133/235 (56%), Gaps = 11/235 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  K EA  KA++ K+SF+ ++S+E+R+PL  IIG +D++  +K   L + Q++Y++ 
Sbjct: 368 KILQAKQEA-EKANQAKSSFLANMSHEIRTPLNGIIGMSDIMAGTK---LTATQNEYLQT 423

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  SS  LL L+NDILDL+ +++G + +  +   + +++ +    +  K+ E N+ ++V 
Sbjct: 424 IETSSQTLLILINDILDLSKIESGNLSITNTDADITEVVYDTLTIVLAKIAEKNLTLEVE 483

Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKNNGS 728
            D      ++ D  R+ Q+   +LSNA+ F+ +G   ++ +  +  D+   + S+ ++G 
Sbjct: 484 IDNDTPYLISLDEHRMRQVLVNLLSNAVKFTHEGGVKVVISCSNTADYCDLLISIHDSGI 543

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEG 780
            I ++  + +F+ F        R   G GLGL+I +  I L GG +S IS   EG
Sbjct: 544 GIAKEKQQHIFSPFTQEDDTTTREFGGTGLGLAICKQLITLMGGEISLISEKGEG 598


>gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1361

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 5/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           ++  L ++   L +A + K+ F+ ++S+ELR+PL  II  ++L+   + G L+ +  +  
Sbjct: 690 SQHELNQRAIQLEEASQFKSDFLANMSHELRTPLNAIILISNLMSRDETGRLDQESIERT 749

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  +   LL L+NDILDL+ V+AG M+++  T+   +L+ E++        E  I ++
Sbjct: 750 RVIYNAGNDLLRLINDILDLSKVEAGRMEVHLETVHSQELVEELEPLFRDSAQEKKIELR 809

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGS 728
              D   G F +D Q+++QI   +LSNA+ F+++GS ++  A  D+  +    SV + G 
Sbjct: 810 -FDDQLQGCFTSDHQKVVQILRNLLSNAIKFTAQGSVILRLAKSDHPQYPIRLSVTDTGI 868

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I +D    +F  F  +  +   Q  G GLGL+I   F  L  G V + S +   +    
Sbjct: 869 GISKDKMPYIFEAFRQMDGSISRQYGGTGLGLAITHRFATLLKGEVELHSEEGKGSQFTL 928

Query: 787 RIP 789
            +P
Sbjct: 929 LLP 931


>gi|323699230|ref|ZP_08111142.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459162|gb|EGB15027.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 643

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 181/408 (44%), Gaps = 63/408 (15%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           N T+Q + E KY ++        ++  EG+    PDG ++ +NPA   ++  +    S  
Sbjct: 234 NKTLQ-EAEEKYRSI-------FENAIEGIFQATPDGVLRRANPAMARIFGYD----SLD 281

Query: 478 THIRNIAATCSRY--------------------------YNESDGWDLFAAI-ITSFDDE 510
             + N+ +  SR                           Y   DG  ++ ++   +  DE
Sbjct: 282 EFLSNVRSLSSRIMVNPDHMQGFFDRVRDQGEVKRFEAEYYRRDGKTIWGSLNARAIHDE 341

Query: 511 RKS---LQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           R +   + G LE ++D    E  +  L      L      D V   R L E N+ LR+ D
Sbjct: 342 RGNFVFVDGILEDITDRKKAEQDLADLNRHLEQLVRERTEDLVNKARELEEANQRLRELD 401

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLK----------TSKLGSLNSKQSQYVE---YI 613
           E+K++F+  VS+ELR+PLT+I+GF  LL            S  G+L  K  +  E    I
Sbjct: 402 EMKSAFLSSVSHELRTPLTSILGFAKLLNKEFTRNFLPLVSPEGALARKGKRIRENLAII 461

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S     L  L+ND+LDL  +++G M      + +N+++     S++    +  + ++   
Sbjct: 462 SHEGERLTRLINDVLDLNKIESGSMGWRDEELDMNEVIEVAASSVSGMFAQTTLELRTEI 521

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
              L   VADR R+ Q+   +L+NA  F+ KGS V L+A          V + G+ I PE
Sbjct: 522 QPGLPHIVADRDRMQQVLINLLNNASKFTEKGS-VTLRAFPRFSQLRVEVVDTGTGIHPE 580

Query: 733 DMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           D  + +F +F      +    + +G GLGL+I    I  +GG + + S
Sbjct: 581 DQSQ-IFEKFHQTHTDDTMVNKPKGTGLGLTICREIIEHYGGRIWVES 627


>gi|153839227|ref|ZP_01991894.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810]
 gi|149747255|gb|EDM58243.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810]
          Length = 566

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           E+   LRK    +++    FV  +++ELR+PL  ++G  +LL  ++LG     Q QY+  
Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKTQLGE---DQRQYLGN 245

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S  +L  ++ND+LD + ++AG+M++       +DL   +    A K  E  I   + 
Sbjct: 246 LIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSI- 304

Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            D KLG     + D +R+ QI   ++ NA+ F+  G  V+L+    NG   F V++ G  
Sbjct: 305 -DKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGG-VVLRVEWVNGTAFFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422

Query: 788 IPSKE 792
           IP KE
Sbjct: 423 IPLKE 427


>gi|317472683|ref|ZP_07931998.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899860|gb|EFV21859.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 940

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 12/253 (4%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I+ +  A  +LT+ +   S R  ++  EK EA  +A   K+ F+  +S+E+R+P+  I G
Sbjct: 532 IMLMAAAAFILTYRSKMRS-RIMQSELEKAEAKSRA---KSEFLSQMSHEIRTPMNAITG 587

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            TDLL+  +   L     + ++ I ASS  +L+L+NDILD++ ++ G + +      L +
Sbjct: 588 LTDLLRMEE--KLPDGAREKLQKIHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTE 645

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           LL+ + + +  +  E  I  + + + +      D  RL Q+ + +LSNA  F+  G  V 
Sbjct: 646 LLDGLIEMMEVQAEEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVT 705

Query: 710 L---KAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763
           L   +  RD   G++ FSVK+NG  I +D  K +F  F    A   +  G GLGL I  S
Sbjct: 706 LTVREEHRDVSTGEYFFSVKDNGIGIAQDRQKQIFEAFEQLGASSARSEGTGLGLPISSS 765

Query: 764 FINLHGGHVSISS 776
            I   GG++ + S
Sbjct: 766 IIKAMGGNLMVES 778


>gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE
 gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 589

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 177/355 (49%), Gaps = 34/355 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498
           +++GV     DG I ++NP    F   W  E+N  +  G ++              +  +
Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNIKEGDNL------------PPEAKE 309

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           LF   +++  ++ + ++ TL+  S  +L   + PL  A++     +V  +V   R +TE+
Sbjct: 310 LFQNAVST--EKEQMIEMTLQGRSWVLL---MSPL-YAES-----HVRGAVAVLRDMTEE 358

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
               R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S    + +  + I   S 
Sbjct: 359 ----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEDRKEIAQIIYDESL 413

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  LVND+LDLA +++G   L+Y  I +N+ L ++ +  +    E NI +         
Sbjct: 414 RMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALDHDISLTEE 473

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F+ D  ++ Q+F+ ++ NA+  +S G +V +            +K++GS IPE+    +
Sbjct: 474 EFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFI 533

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF     A    R G GLGL+IV++ +  H G +++ S  +  TT +  IP+K
Sbjct: 534 FERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFSFYIPTK 588


>gi|17230389|ref|NP_486937.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131991|dbj|BAB74596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 646

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 12/259 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALR----------KADEIKNSFVQHVSYELRSPL 584
           N Q +    + TD    +RA TE+N+ L+           A+  K+ FV  VS++LRSPL
Sbjct: 380 NGQPVRVVGSTTDISDRKRAETERNQLLQLEKLARAEAEAANHTKDEFVAMVSHDLRSPL 439

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G++ LL+T +L      ++  +E I  ++     L+ D+LD++ V  G ++L +  
Sbjct: 440 NAILGWSQLLRTRQLDETTFTRA--LETIERNAQSQSKLLEDLLDMSRVLRGKLQLEFCQ 497

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L  ++    ++        NI +K + D  +     D  RLLQ+   +LSNA+ F+  
Sbjct: 498 VDLAAIIGVAIETAYPSAKAKNIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPP 557

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
              + ++ +  + +   +V + G  I  +    VF+R+     + ++ G+GLGL+I    
Sbjct: 558 EGQITVQLSYTDSEAHITVTDTGIGIKSEFLPYVFDRYRQADCQHKQHGLGLGLAIARYL 617

Query: 765 INLHGGHVSISSSDEGVTT 783
           I LHGG + ++S  EG  T
Sbjct: 618 IELHGGAIHVTSPGEGQGT 636


>gi|298480139|ref|ZP_06998338.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|299144696|ref|ZP_07037764.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298273948|gb|EFI15510.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298515187|gb|EFI39068.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 399

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 140/261 (53%), Gaps = 18/261 (6%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYE 579
           E  I PL     +    +++    AE+   ++ + L+ A       D +K++F+ ++S+E
Sbjct: 133 ENRIFPLDKEYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHE 192

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+ L+  +   +   +++QY E I  +S +LLNL NDILDLA+++A  +K
Sbjct: 193 IRTPLNAIVGFSKLITYA---TSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLK 249

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNA 698
            N   I L D+  +++Q    K  +N +++ ++ D     + + D  R++QI S +LSNA
Sbjct: 250 FNIRPIKLIDICLQLEQQFCHKT-QNGVKL-ILDDVDTDMYTSGDWNRIIQIISNLLSNA 307

Query: 699 MDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
             F+ KG   I    R+  DF+ F VK++G  IP     ++F RF       Q  G GLG
Sbjct: 308 TKFTPKGE--IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDDFVQ--GTGLG 363

Query: 758 LSIVESFINLHGGHVSISSSD 778
           L++    +   GG + + S +
Sbjct: 364 LTLCRMLVEKMGGRIWLRSQE 384


>gi|327541868|gb|EGF28379.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 601

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 11/252 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   QT L  VN     R ++   + N  L +A+ +K  F+ ++S+ELR+PL +IIGF++
Sbjct: 315 LTETQTQLQSVNRELDARVDQ-FAQLNLQLYEANRLKTDFLANMSHELRTPLNSIIGFSE 373

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+   + SL+ KQ +Y   I  S  +LL ++NDILDLA V+AG M++  S   L+ L+ 
Sbjct: 374 VLQ--GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEAGKMEVRRSEFQLSRLVG 431

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                I +   + NI + V     L     D  +L QI + +LSNA+ F+ +G  + ++ 
Sbjct: 432 AQCDMIQSLSEDKNISLSVEVPDDLPVAYQDPNKLGQILNNLLSNAIKFTPEGGMITVRV 491

Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAH----RGQRR---GVGLGLSIVESF 764
              + D F  SV + G  + ++    +F +F  +       G  R   G GLGLSIV+  
Sbjct: 492 VDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGLTREFAGTGLGLSIVKEL 551

Query: 765 INLHGGHVSISS 776
             L GG +   S
Sbjct: 552 AVLLGGEIDFQS 563


>gi|317122483|ref|YP_004102486.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592463|gb|ADU51759.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
          Length = 550

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 6/234 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R+ ++I+  FV +VS+ELR+P+  I GF + L    +    +    + + I   +  + 
Sbjct: 293 IRRLEQIRRDFVANVSHELRTPVAAIQGFAETLLEGVIREDPATAEHFAQVIHREAERMA 352

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+LDLA +++    L      L D   +  +    ++    +R++V S  +     
Sbjct: 353 RLVQDLLDLARLESPEPGLQRERFDLRDSAAQAAERFRPRLEAAGLRLEVESPPEPVPVW 412

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIPEDMCKS 737
           ADR RL Q+++ +L NA  ++  G TV +   RD        +  V++ G  IP D    
Sbjct: 413 ADRHRLDQVWTNLLENARQYTPAGGTVTVAVRRDGTGRKARAVGEVRDTGRGIPPDALPR 472

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF  V         G GLGL+IV+  I  HGG V   S     T I  RIP
Sbjct: 473 IFERFYRVDPGRSRASGGTGLGLAIVKHIIEAHGGAVEAESELGAGTVIRFRIP 526


>gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1138

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 128/245 (52%), Gaps = 3/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + +T+K   + +A + K+ F+ ++S+ELR+PL +I+    LLK +K  +LN+ Q +Y
Sbjct: 465 KARKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIKY 524

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I ++ + LL+L+N++LDLA +++G + L    I ++ L   ++        E +I  
Sbjct: 525 ATVIHSAGSDLLHLINELLDLAKIESGQIDLVEDHIDIHSLTRNIEGLFRISAEEKSINF 584

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           K   D +  S F+ D  RL Q+   +LSNA  F+  G  + L     N +  F V+++G 
Sbjct: 585 KTTIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELAYKHVNSNIHFIVQDDGI 644

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +  K +F  F        R+  G GLGLSI      L GG +S+ S  +  +T   
Sbjct: 645 GIAPEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTF 704

Query: 787 RIPSK 791
            +P +
Sbjct: 705 ILPYR 709


>gi|189466068|ref|ZP_03014853.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM
           17393]
 gi|189434332|gb|EDV03317.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 133/239 (55%), Gaps = 5/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611
           + L + NE   +++++KN+F+ ++++E+R+PL  I+GFT++L  ++  +L+ ++   +++
Sbjct: 50  KTLQQLNEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTNVL--AETDNLSREERMIFLK 107

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +   L+ ++ND+LD + ++A  M+     + +N L+ E+  +       + I+I+ 
Sbjct: 108 EINDNKDFLVQMINDLLDFSKIEANTMEYKDGDVDVNALIQEMCAAENAHPRPSGIQIEF 167

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        + DR R  Q+ + ++ NA+ F+ +GS  I      N +F F V + G  I 
Sbjct: 168 VEKLPQCRLMIDRVRFAQVINNLVKNALKFTEQGSVKIGYRRLSNNNFYFYVADTGCGID 227

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           E+  +++F RFV   +    RG GLGLSI +S +  +GG + + S     +T    +P+
Sbjct: 228 EESRRAIFERFVKMNY--NIRGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284


>gi|167840906|ref|ZP_02467590.1| sensory box histidine kinase/response regulator [Burkholderia
           thailandensis MSMB43]
          Length = 765

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 8/230 (3%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           L    +A R+AD    +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++
Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  L  +V DILD +++  G ++L+   + L  ++N+V  ++ T    + I + V
Sbjct: 435 AIDRSARSLARMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQADGIELAV 494

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      D +RL Q+ S +LSNA  F+ +G  V +   R       +V + G  I 
Sbjct: 495 ECALDTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERTGSQAKLTVADTGQGIS 554

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            +    VF  F     A    RRG+GLGLSIV   + LHGG V  +S+ +
Sbjct: 555 PEFLPHVFEAFRRAEGAPASSRRGLGLGLSIVRHIVELHGGKVGAASAGK 604


>gi|167566984|ref|ZP_02359900.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis EO147]
          Length = 749

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 17/263 (6%)

Query: 540 LTFVNVTDSVRAER----ALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592
           LT  +  +  R ER    +L    +A R+AD    +K+  +  VS+ELR+PL  I G+ +
Sbjct: 359 LTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIE 418

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L  ++N
Sbjct: 419 VLRNPAGGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +V  ++ T      + + V  D  L + +   D +RL Q+ S +LSNA  F+ +G  V +
Sbjct: 476 DVTGALGTAAQAEGLDLTV--DCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRVTV 533

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
              R +      V + G  I  +    VF  F     +    RRG+GLGLSIV     LH
Sbjct: 534 SLMRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIAELH 593

Query: 769 GGHVSISSSDEGV-TTINCRIPS 790
           GG V ++S+ + + TT    +P+
Sbjct: 594 GGKVEVASAGKRLGTTFTVTLPA 616


>gi|190892130|ref|YP_001978672.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190697409|gb|ACE91494.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 511

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++    +G L N    
Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI
Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I    + +L +  AD + + Q+   +LSNA+ F+ +G  + +K       G +I S+K+
Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S     T 
Sbjct: 421 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480

Query: 784 INCRIPSK 791
           +   +P+K
Sbjct: 481 VIAILPAK 488


>gi|260432099|ref|ZP_05786070.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415927|gb|EEX09186.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
          Length = 738

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 12/246 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+T SV+ E  L    +    A+  K++F+ ++S+E+R+P+  I+G TDLL  ++   L
Sbjct: 192 LNITASVQHEAQLQAARKKAEAANRAKSAFLANMSHEIRTPMNGIVGMTDLLSETQ---L 248

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q  YV+ I AS   LL ++ND+LD + ++A  + L+     L   +NEV   +    
Sbjct: 249 NDEQRLYVDTIRASGEALLVIINDVLDYSKIEADKLVLHPEEFDLERCINEVVMLLQPSA 308

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDN 716
            +  + + V  D  L + FV D  R+ QI + ++ NA+ F+  G  +I        +R++
Sbjct: 309 RDKGLTLLVDYDLFLPTLFVGDPGRVRQILTNLVGNAVKFTLHGHVLIRVTGVPDESRND 368

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            D   ++++ G  IP D    +F  F  + +    Q  G GLGLSI +  I+L GG + +
Sbjct: 369 CDIHIAIEDTGIGIPPDKIDHIFGEFNQIDDKKTRQFDGTGLGLSITKRLISLMGGTLWV 428

Query: 775 SSSDEG 780
             SD G
Sbjct: 429 -DSDPG 433


>gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 765

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 190/412 (46%), Gaps = 32/412 (7%)

Query: 385 SETHKDTWHL-PNGQTLHVIVTS--------NPR-----GGTIWMFENLTVQV-DLETKY 429
           S T+ + WH   NG T  +++++        NP+        I   +N+  ++ + E KY
Sbjct: 339 SYTNIEIWHTHKNGTTFPMLMSAVVMKDEGRNPQYLSASAVDITHLKNIEDRIYESEKKY 398

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           ++LV+   + I  + +G+  +     I++S  +   L    EN        + I     R
Sbjct: 399 SSLVENGNDGIIIIQDGLIKYANRKMIEMSEYSHEELI---ENPFIDFVSPKYIEIVKDR 455

Query: 490 YYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           Y    +G D+   +   I + DD    +      LS S++ Y  +      TM    +++
Sbjct: 456 YQKRLNGEDIPSHYEIEIEANDDRTIPVD-----LSVSIINYQGL----LATMAILRDIS 506

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  +A+ AL        +A+  K  F+ +VS+ELR+PL  IIGF+D+L +   G LN KQ
Sbjct: 507 DWKQAKAALIYARLTAEEANRTKTEFLANVSHELRTPLNPIIGFSDILVSGVAGELNEKQ 566

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y   I  + + LL +VN I+D+  +    + L      + +++ E K  + +   +  
Sbjct: 567 KKYALNIKQNGSKLLTIVNRIIDMCNIRISKLDLKCDCFKVIEMIIETKDLLNSIALKKK 626

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I + +  D +L   VAD+ +  +I   ++ NA+ F+  G  V + A + +     SV + 
Sbjct: 627 ILLDLHIDPELNEIVADKTKTREILYNLIENAIKFTPSGGHVSIHAIQKDDYVQISVTDT 686

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  I       +F  F  V ++   Q  GVGLGL +V+ ++ L GG + + S
Sbjct: 687 GIGIAHSDIGIIFRPFLQVDSSTTRQYDGVGLGLMLVKEYVKLQGGDIWVDS 738


>gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 589

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 176/355 (49%), Gaps = 34/355 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498
           +++GV     DG I ++NP    F   W  E+N  +  G ++              +  +
Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNIKEGDNL------------PPEAKE 309

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           LF   +++  ++ + ++ TL+  S  +L   + PL  A++     +V  +V   R +TE+
Sbjct: 310 LFQNAVST--EKEQMIEMTLQGRSWVLL---MSPL-YAES-----HVRGAVAVLRDMTEE 358

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
               R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S    + +  + I   S 
Sbjct: 359 ----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEDRKEIAQIIYDESL 413

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  LVND+LDLA +++G   L+Y  I +N+ L ++ +  +    E NI +         
Sbjct: 414 RMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALHHDISLTEE 473

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F+ D  ++ Q+F+ ++ NA+  +S G +V +            +K++GS IPE+    +
Sbjct: 474 EFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFI 533

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF     A    R G GLGL+IV++ +  H G +++ S  +  TT    IP+K
Sbjct: 534 FERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTK 588


>gi|271963794|ref|YP_003337990.1| histidine kinase [Streptosporangium roseum DSM 43021]
 gi|270506969|gb|ACZ85247.1| histidine kinase [Streptosporangium roseum DSM 43021]
          Length = 562

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 124/239 (51%), Gaps = 8/239 (3%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K+  LR+A + KN F   VS+ELR+PL +IIG   LL       L  +Q   ++ I +S+
Sbjct: 201 KSAQLREASDAKNRFWATVSHELRTPLNSIIGLVRLLVGPGGDPLVEEQLHQIQLIGSSA 260

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             LL+LV+++LD+A  +AG +    S + L  L   ++ ++      + + + V +SDG 
Sbjct: 261 ETLLSLVSELLDMAKAEAGRLAPQPSVVDLVALAERMRMTLRPTSGTDQVTLSVKVSDGA 320

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDM 734
              FV D   L +I   +LSN + F+ +G  V L+   D G  + +F+V + G  +PE+ 
Sbjct: 321 AELFV-DEVMLTRILRNLLSNGLKFTEEGE-VRLEIDLDAGTHEMVFTVTDTGIGVPEEH 378

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + VF  F  V    + + +G GLGL          GG + +SSS EG   +  R+P +
Sbjct: 379 LERVFEEFFQVPGPIQARTKGTGLGLPYARRLAQAMGGSLQLSSSPEGTMAV-LRLPHR 436


>gi|167748905|ref|ZP_02421032.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662]
 gi|167651527|gb|EDR95656.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662]
          Length = 940

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 12/253 (4%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I+ +  A  +LT+ +   S R  ++  EK EA  +A   K+ F+  +S+E+R+P+  I G
Sbjct: 532 IMLMAAAAFILTYRSKMRS-RIMQSELEKAEAKSRA---KSEFLSQMSHEIRTPMNAITG 587

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            TDLL+  +   L     + ++ I ASS  +L+L+NDILD++ ++ G + +      L +
Sbjct: 588 LTDLLRMEE--KLPDGAREKLQKIHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTE 645

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           LL+ + + +  +  E  I  + + + +      D  RL Q+ + +LSNA  F+  G  V 
Sbjct: 646 LLDGLIEMMEVQAEEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVT 705

Query: 710 L---KAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763
           L   +  RD   G++ FSVK+NG  I +D  K +F  F    A   +  G GLGL I  S
Sbjct: 706 LTVREEHRDVSTGEYFFSVKDNGIGIAQDRQKQIFEAFEQLGASSARSEGTGLGLPISSS 765

Query: 764 FINLHGGHVSISS 776
            I   GG++ + S
Sbjct: 766 IIKAMGGNLMVES 778


>gi|81299291|ref|YP_399499.1| GAF sensor signal transduction histidine kinase [Synechococcus
           elongatus PCC 7942]
 gi|81168172|gb|ABB56512.1| GAF sensor signal transduction histidine kinase [Synechococcus
           elongatus PCC 7942]
          Length = 577

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 137/263 (52%), Gaps = 25/263 (9%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           RA + L E+ +AL +A        ++K  F+ + S+ELR+PLT +IG+  LL+   L   
Sbjct: 309 RANQTLLEQQQALIEAHRQSEALSQLKTDFLANTSHELRTPLTGMIGYLQLLQ-DDLAET 367

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +++     S+  LL ++NDILD+A ++AG ++L   T+ L +LL EV+  + ++ 
Sbjct: 368 PEERQEFIAGAYHSALHLLGIINDILDIARIEAGRLQLQAETVPLRNLLAEVETCLRSQA 427

Query: 663 HENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARD 715
               +  R ++ ++ +  +   DRQRLLQ+   ++ NA+ F+  G     +T + +    
Sbjct: 428 QAKGLVYRCRIAAETESVALWGDRQRLLQVLFNLVGNAIKFTLTGYVEVRATAVWQPLCA 487

Query: 716 NGDFI-----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
           NG  +       ++++G  +  +   S+F  F S A     R   G GLGL I    +  
Sbjct: 488 NGQNLPGYLRLEIEDSGIGVAPERQGSLFQPF-SQADSSLTRQFGGSGLGLVICRRLLES 546

Query: 768 HGGHVSISSSDEGV-TTINCRIP 789
            GG V + S  EG+ TT+ C IP
Sbjct: 547 MGGIVELFSPGEGLGTTVTCLIP 569


>gi|328474775|gb|EGF45580.1| hypothetical protein VP10329_18770 [Vibrio parahaemolyticus 10329]
          Length = 566

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           E+   LRK    +++    FV  +++ELR+PL  ++G  +LL  ++LG     Q QY+  
Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKTQLGE---DQRQYLGN 245

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S  +L  ++ND+LD + ++AG+M++       +DL   +    A K  E  I   + 
Sbjct: 246 LIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSI- 304

Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            D KLG     + D +R+ QI   ++ NA+ F+  G  V+L+    NG   F V++ G  
Sbjct: 305 -DKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGG-VVLRVEWVNGTAFFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422

Query: 788 IPSKE 792
           IP KE
Sbjct: 423 IPLKE 427


>gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1044

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 133/251 (52%), Gaps = 12/251 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T V+VT+   AE       EA   A+  K+ F+ ++S+E+R+PL  I+G   LL+T+   
Sbjct: 645 THVDVTERKNAEYVALRAKEAAEAANRAKSEFLANMSHEIRTPLNGIMGMLQLLQTT--- 701

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SLN +Q +Y      S++ L +L++DILDL+ V+AG M +      L   L++     A+
Sbjct: 702 SLNHEQLEYSSMAVQSTSRLTSLLSDILDLSRVEAGKMPIRPEVFDLRKKLHQSIDLFAS 761

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
              ++ + ++   D  L   V  D  RL Q+ + ++ NA  F+ +G   +    L A  +
Sbjct: 762 IALQSGVELRHHFDDTLPQHVIGDPLRLQQVLTNLIGNAFKFTERGFVSVEAYPLPARNE 821

Query: 716 NG-DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           N     F V ++G  IP++    +F  F  VS  +  Q +G GLGLSI +  + L GG++
Sbjct: 822 NQLRIFFEVSDSGCGIPDEALGLLFEPFSQVSQGYTRQYQGAGLGLSICKRLVGLMGGNM 881

Query: 773 SISSSDEGVTT 783
           +I SS+ GV T
Sbjct: 882 AI-SSEVGVGT 891


>gi|332703725|ref|ZP_08423813.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 946

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 19/242 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  +A      K EA R A+  K+ F+  +S+E+R+P+  IIG T+L   + +    
Sbjct: 552 DITDLAQA------KQEAER-ANRAKSEFLASMSHEIRTPMNGIIGLTEL---ALMQRPK 601

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +K   Y+  +  S+  LL ++NDILDL+ ++AG ++L  S     ++L  + +++  +  
Sbjct: 602 AKVRDYLGMVKQSADSLLGIINDILDLSKIEAGRIELEKSFFSPREMLEGLFETMRIEAE 661

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--- 719
              I      D ++  S   D  RL QIF  ++SNA+ F+  GS  +   A D+ D    
Sbjct: 662 RKGITFSTKIDPRVPASLFGDEGRLRQIFVNLISNALKFTEAGSVSVQVTAEDHMDLAKP 721

Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                I S+++ G  IP +  +S+F  F +     +  G GLGL+I +  I+L GG +++
Sbjct: 722 GPVEIIASIRDTGIGIPANRLESIFEPFDTGTRSTRHGGTGLGLTITKGLIDLMGGRITV 781

Query: 775 SS 776
            S
Sbjct: 782 KS 783


>gi|158421976|ref|YP_001523268.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS
           571]
 gi|158328865|dbj|BAF86350.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS
           571]
          Length = 586

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A+ +KN FV  VS+ELR+PLT+I G   LL     GSL     + V   S +   L+ 
Sbjct: 353 KRAEVMKNEFVSTVSHELRTPLTSIAGSLGLLAGGATGSLPEGAQRLVTIASQNCRRLVR 412

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           L+NDILD+  + +  +     T+ L ++     +  +    E+ + + + +  G L    
Sbjct: 413 LINDILDIEKMQSSGITFARDTVSLAEVAERSVEQNSGFALEHQVALTLEVEPGDL-RVT 471

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL+Q+ + +LSNA+ FS  GSTV +  AR       +V+++G  IPE    ++F R
Sbjct: 472 GDADRLIQVLTNLLSNAVKFSPAGSTVEVSVARRGDHVRATVRDHGMGIPESFRSAIFTR 531

Query: 742 FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPSKE 792
           F    N+   QR G GLGL+I     + H G +S   ++EGV T  +  +P+ E
Sbjct: 532 FAQADNSDTRQRGGTGLGLAIAREIADHHDGTLSF-ETEEGVGTAFHLDLPALE 584


>gi|312113023|ref|YP_004010619.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218152|gb|ADP69520.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 508

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           ERA    +EA  +A+     K+ F+ ++S+ELR+PL  I+GF++++K   LG + N    
Sbjct: 229 ERAKAASDEARVRAEAANVAKSKFLANMSHELRTPLNAIMGFSEMIKDEVLGPIDNENYR 288

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I  S + LL L+N+ILDL+ ++AG  +L    I +     E  + +    H+ N+
Sbjct: 289 SYAADIHESGSHLLKLINEILDLSRIEAGRYELTEKPIDVAATALESLRLMRIDAHQKNL 348

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
           R+       +   +AD + L QI   +LSNA+ F+     + ++A    +G+ + SV++N
Sbjct: 349 RVVTDFRPDMPRIMADERALRQICLNLLSNAIKFTPDSGLIAVRAGILPSGEAVLSVRDN 408

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  IPE+    V   F   S A +    G GLGL IV     LHGG   + S
Sbjct: 409 GPGIPEEEISQVLRAFGQGSLALKTGESGTGLGLPIVSGLAELHGGRFELRS 460


>gi|260902965|ref|ZP_05911360.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037]
 gi|308107447|gb|EFO44987.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037]
          Length = 566

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           E+   LRK    +++    FV  +++ELR+PL  ++G  +LL  ++LG     Q QY+  
Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKTQLGE---DQRQYLGN 245

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S  +L  ++ND+LD + ++AG+M++       +DL   +    A K  E  I   + 
Sbjct: 246 LIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSI- 304

Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            D KLG     + D +R+ QI   ++ NA+ F+  G  V+L+    NG   F V++ G  
Sbjct: 305 -DKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGG-VVLRVEWVNGTAFFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422

Query: 788 IPSKE 792
           IP KE
Sbjct: 423 IPLKE 427


>gi|150021372|ref|YP_001306726.1| histidine kinase [Thermosipho melanesiensis BI429]
 gi|149793893|gb|ABR31341.1| histidine kinase [Thermosipho melanesiensis BI429]
          Length = 465

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 175/360 (48%), Gaps = 50/360 (13%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           E ++ ++EG+ V   DG I+ +N   + + + E+       +     +  +  + +  G 
Sbjct: 144 EVLNSINEGIFVLNKDGEIEFTNKFGKRILEKEDLE----DYFNFFISDENNIFTKEFGG 199

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           + F  + T FD                        L + + ++ F NVT  +  E+    
Sbjct: 200 NYFTIVKTKFD-----------------------FLGDEKYIIVFNNVTYEMELEK---- 232

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
               L++ D+IK  FV ++S+ELR+PL+ +  +T+ L   ++      Q +++  I   S
Sbjct: 233 ----LKQLDKIKTEFVANISHELRTPLSAVKAYTETLLNMEIDP--ESQKEFLSIIYEQS 286

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGK 676
             L +L+ND+LD   +D+G M+L YS   + +++++V + + +   + ++++ K   D +
Sbjct: 287 ERLESLLNDLLDFTLIDSGSMELEYSKFNICNVVDDVLKKLLSFAQKQDVKLEKECEDVE 346

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIP 731
           +    AD++R+ Q+   ++ NA+ F+ +        +++K   D    I  V++NG  IP
Sbjct: 347 IS---ADKRRIFQVIYNLVDNAIKFNDREKPERFVKILVKKLEDI--LIIEVEDNGIGIP 401

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   + +F +F  +  +   +  G G+GL+IV+  + LHGG++ + S ++  +     IP
Sbjct: 402 KSEQEKIFEKFYKIDRSLTYEVPGTGMGLAIVKEIVRLHGGNIEVESEEKKGSIFRVNIP 461


>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1009

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 122/223 (54%), Gaps = 10/223 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+  K+ F+ ++S+E+R+PL  +IG T LL  ++L   NS+Q +Y E +  S   LL+
Sbjct: 354 QAANLAKSEFLANMSHEIRTPLNGVIGMTGLLLETEL---NSQQRRYAETMLYSGESLLS 410

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+NDILDL+ ++A  ++L      L   +++   ++A + HE  + +  +    L   V 
Sbjct: 411 LINDILDLSKIEARQLELEEIEFDLAGTIDDFAATMAVRAHERGLELICLFSPGLSPLVK 470

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKS 737
            D  RL Q+ + ++ N++ F+ KG   I  ++RD  +      F + + G  IP++   +
Sbjct: 471 GDCGRLRQVLANLVGNSIKFTEKGEVAIKVSSRDKDEENVLLSFEISDTGVGIPQEKLTT 530

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           +F +F        R+  G GLGL+I    ++L GG +++SS +
Sbjct: 531 IFEKFSQVDASTTRKYGGTGLGLAITRQLVDLMGGEITVSSRE 573


>gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1295

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 124/242 (51%), Gaps = 15/242 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L EK  AL  +   K+ F+ ++S+ELR+PL +I+  + +L T+K G+L  +Q +Y
Sbjct: 552 KARQELEEKARALEISGRYKSEFLANMSHELRTPLNSILILSQMLATNKQGNLLPRQLEY 611

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR- 668
              I+ S + LLNL+N++LDL+ ++AG M +N  T+ L  LL+ +         E  +  
Sbjct: 612 ATTINNSGSDLLNLINEVLDLSKIEAGRMDINPETVNLKALLDSLLHPFRPLAEEKQLTL 671

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
           +  ++D    +  +D  RL QI   +LSNA+ F+++G   I     +N            
Sbjct: 672 VGELADDLPVTIYSDETRLGQILKNLLSNALKFTAEGEVKITIGRPENDKLPPGLKLNPA 731

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +F V++ G  I  D  + VF  F        R+  G GLGLSI      L GG ++ 
Sbjct: 732 RTLVFQVRDTGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLGGELTA 791

Query: 775 SS 776
           +S
Sbjct: 792 AS 793


>gi|158337655|ref|YP_001518830.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158307896|gb|ABW29513.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 801

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 22/263 (8%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK- 595
           + M    ++T+  R E  +       R+ +E+K+ FV   S+E R+PL  I+   +LL+ 
Sbjct: 542 EVMAVIRDITERKRYEDDIRTALNKERELNELKSRFVAMTSHEFRTPLATILSSAELLEH 601

Query: 596 -------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
                  T KL  LN  Q Q VE+++        L+ND+L L   ++G +      + L 
Sbjct: 602 YGHKWDDTRKLKHLNQIQ-QSVEHMTG-------LLNDVLLLGKAESGNLAFKPIPMQLT 653

Query: 649 DLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +    + +   I TK HE   R++     +      D + L  IF+ +LSNA+ +S +G 
Sbjct: 654 EFCKGLAEELQITTKTHEIVCRLQ----DQPAETRMDEKLLRHIFTNLLSNAIKYSPQGG 709

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
           TV      ++   IF+V+++G  IP+  C  VFN F   ++ G   G GLGL+IV+  ++
Sbjct: 710 TVDFDLVFEDNYAIFNVQDHGLGIPQSECDRVFNSFNRASNVGNISGTGLGLAIVKRSVD 769

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           LHGG +S++S ++  TT   ++P
Sbjct: 770 LHGGEISLTSQEKVGTTFTVQLP 792


>gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1637

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 165/722 (22%), Positives = 316/722 (43%), Gaps = 83/722 (11%)

Query: 114  SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
            SFE+++   H I+  +  E++R   Q+ D   E + + + +    +  +  +LR   ++G
Sbjct: 796  SFESFI---HPIQDDQFLERVR---QARDERVELEWEVSCRDSSYLVRALPYLRNSEING 849

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFD-SLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            +     +  +  ++    +  FK + D ++D LV   DQ G I +AN   +K  +  G  
Sbjct: 850  VVIAFVDVDI-LRRAERDVLKFKFMADQNIDALVL-LDQKGKISYAN---RKMCDQLGYS 904

Query: 233  FQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
             ++ +G+    FK E        R+  + A   N  E  S L+  +   + +   L    
Sbjct: 905  NEEILGQLLSRFKSETDPKSFDDRLEKAHAKGGNLFE--SWLQQRDGTEFPVEVALTPVF 962

Query: 288  EAGIAI------DVSKEITVNDQLTHTYEILHNLTVAIAIFD---QNRYLQFHNRSFVEL 338
              G  +      D+S   T   Q+    E + +    I I D   ++  + F N+ F ++
Sbjct: 963  LQGKQLLFASIRDISLRKTHESQMRLLSEAVQSAANGIVITDCSLEDHPISFVNKGFTDM 1022

Query: 339  -----WEI---DLAFLATNPSNDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETH 388
                  EI   +  FL    +++E +  +R A    E +    K +++N    +  ++ +
Sbjct: 1023 TGFSEQEILGRNCRFLQGEHTDNETVLRIRRALGRGESVRELIKNYRKNGEPFW--NDLY 1080

Query: 389  KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
                H  NG   H +   N          ++T +++   +  T  +     +D  +EG+ 
Sbjct: 1081 ITPVHDENGILTHFVGVQN----------DVTERIEAARQTETNERTIRLLLDSTAEGL- 1129

Query: 449  VFGPD--GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAI- 503
             FG D  G+   SN     L   E      G  +  +A  C    N  E D   +  A+ 
Sbjct: 1130 -FGLDVHGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGNPFEKDSLQILGAVR 1188

Query: 504  ----ITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSVRAERAL 555
                I  +D+      G         +EY   P+         ++TFV++   ++ E  L
Sbjct: 1189 AGEAINRYDERFCRKDG-----ESFPVEYWCHPIQEDGKIVGAVVTFVDIETRLQVENEL 1243

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVEYIS 614
             E   A   A+E K+ F+ ++S+ELR+PL+ I+GFT +L+     G++     +Y+  I 
Sbjct: 1244 REAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDPDEGTIQ----EYLSTIQ 1299

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVI 672
             +   LL L+ D+LDL+ ++A       S++ L +LL ++ +++   T+ ++N +   V 
Sbjct: 1300 RNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQDYQNTLHFDV- 1358

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGDFIFSVKNNGSS 729
            S+    +   D  RL QI   +++NA+ F+ KG   V++++ +  D+   +  V ++G  
Sbjct: 1359 SEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFLLLKVIDDGIG 1418

Query: 730  IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I ++  +++F  FV        R  G GLGLSI +   N  GG + +SS++   +    R
Sbjct: 1419 IADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSSTEGEGSEFTIR 1478

Query: 788  IP 789
            +P
Sbjct: 1479 LP 1480


>gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
 gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
          Length = 1307

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 142/277 (51%), Gaps = 31/277 (11%)

Query: 536  AQTMLTFVNVTDSVRA----ERALTEKNEALRKADEI----------KNSFVQHVSYELR 581
            A+ ++  ++VTD VRA    E A  E+ E LR+A++           K+ F+  + +ELR
Sbjct: 890  ARILVVALDVTDYVRARKKLEAAAREREELLRRAEDARRDAERANRAKDEFLAMLGHELR 949

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQ---SQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            +PL  I+    L++    G    ++    + +++++A       LV+D+LD++ +  G +
Sbjct: 950  NPLAPIVTALHLMRLRAGGHAERERLVIERQIKHLTA-------LVDDLLDVSRITRGKV 1002

Query: 639  KLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +L    I + D++ +  +  S   +   +++ + V S G   +   D  RL Q+ S +L+
Sbjct: 1003 ELKKQRIEIADVVAKAVELASPLLEQRRHHLTVTVPSSGL--AVEGDVTRLAQVVSNLLT 1060

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
            NA  ++  G  + ++A R  G+   SV++NG  I  +M  SVF RFV       R   G+
Sbjct: 1061 NAAKYTESGGEIAVRAGRVEGEVALSVRDNGIGIAPEMLPSVFERFVQERQALDRSQGGL 1120

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPS 790
            GLGL+IV + I +HGG VS  S   G  +    R+P+
Sbjct: 1121 GLGLAIVHNLIAMHGGRVSAHSEGRGRGSEFTIRLPA 1157



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 8/227 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           D  K  F  +VS+E R+PLT ++G   D L + +     +   +++     ++  LL LV
Sbjct: 369 DSAKTLFFSNVSHEFRTPLTLMLGPMEDALASPE----RALCGEHLSLAYRNALRLLKLV 424

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N +LD + ++ G  + +Y    L  L  ++  +  + +    +  KV           DR
Sbjct: 425 NALLDFSRLEMGRAQASYDPTDLAGLTVDLASAFRSAIERAGLAFKVDCPELPEPVFVDR 484

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
               +I   +LSNA+ F+  G  ++L  AR++      V++ G+ IPE     +F RF  
Sbjct: 485 DMWEKIVLNLLSNALKFTFDGEILLLLRARED-QVELVVRDTGTGIPEHELPHLFERFHR 543

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V  A      G G+GL++V   + LHGG +   S     T     IP
Sbjct: 544 VQGARARTHEGSGIGLALVHELVRLHGGSIRAESRLGEGTAFTIAIP 590


>gi|85704542|ref|ZP_01035644.1| two-component sensor [Roseovarius sp. 217]
 gi|85670950|gb|EAQ25809.1| two-component sensor [Roseovarius sp. 217]
          Length = 454

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++NE  + A E+K+ F+  VS+ELR+PLT+I+G  DL+ +  LG +  K    +   +
Sbjct: 214 IKQENERAKAALEVKSQFLATVSHELRTPLTSIMGSLDLVNSGVLGEVPEKLKHVIGIAA 273

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   L NL++D+LDL  ++AG +  ++  +  N+L++E  +S      +  I++  I  
Sbjct: 274 KNGHRLANLIDDLLDLQKIEAGEIVFHFKPLNANELVDEAVESTTGYAGKLGIQVTTIHC 333

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +   F+ DR RL+Q+ + +LSNA+ FS +  TV ++          SV + G  IP+D 
Sbjct: 334 EEDCRFLGDRSRLIQVMNNLLSNALKFSHERGTVRVRVEALGTRIRISVHDEGVGIPKDA 393

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              VF +F  V ++   +  G GLGL+I +  +  H G +   S
Sbjct: 394 KDRVFGKFSQVDSSDVRKVGGTGLGLNISKQIVERHNGTIDYVS 437


>gi|167762177|ref|ZP_02434304.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
 gi|167699820|gb|EDS16399.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
          Length = 852

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 131/238 (55%), Gaps = 6/238 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610
           E  +  ++ AL +AD +K++F+ ++S+E+R+PL  I+GF+DLLK   L + +S++  Q+V
Sbjct: 615 EELIAARDRAL-QADRLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLQAFSSEEVQQFV 671

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I+ + T+LL L+NDILDL+ +++G M   +S+  L  ++ EV  S    M +      
Sbjct: 672 ETININCTLLLALINDILDLSRIESGTMDFQFSSYNLTFIMQEVYDSQRLSMPQGVELCT 731

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              +G       D  RL Q+ + +++NA  F+ +GS  +     ++G     V++ G+ I
Sbjct: 732 DFPEGADKYITTDAVRLKQVLNNLINNAKKFTVQGSITLGYRVDESGYTTVFVEDTGAGI 791

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  K +F RF       Q  G GLGLSI ++ +    G ++++S     T    R+
Sbjct: 792 SDEDQKHIFERFYKADSFTQ--GAGLGLSICQTIVERIHGTITVTSKPGRGTRFEVRM 847


>gi|163843854|ref|YP_001628258.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|223635611|sp|B0CI82|PDHS_BRUSI RecName: Full=Cell-division control histidine kinase pdhS
 gi|163674577|gb|ABY38688.1| PAS domain S-box [Brucella suis ATCC 23445]
          Length = 1035

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 175/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR---------RGVGLGLSIVESFI 765
            NGD +  V++ G  + +   +     F   NA  G++          G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|254187078|ref|ZP_04893593.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934761|gb|EDO90431.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 770

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D      R+ +  
Sbjct: 128 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 183

Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             ++     +  + S   +S E H   W  P +GQ + +   ++P         G + + 
Sbjct: 184 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 240

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 241 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 296

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 297 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 352

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 353 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 394

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 395 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 451

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD +++  G ++L+   + L  ++N+V  ++      + I + V           D +RL
Sbjct: 452 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 511

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F     
Sbjct: 512 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 571

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 572 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 603


>gi|330967661|gb|EGH67921.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 1170

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQGELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +FSV+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFSVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|172056770|ref|YP_001813230.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989291|gb|ACB60213.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 854

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K+  V  VS+ELR+PL++I GFT+L+   K+    SKQ +Y++ I + +  L NLVN
Sbjct: 614 DRLKSELVSTVSHELRTPLSSIYGFTELMLNRKMDL--SKQDKYLKTIHSETERLSNLVN 671

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D LD+  ++A I       + L  LL E  Q  A     + I  + ++D       AD +
Sbjct: 672 DFLDVQRMEARIQSYQKGLLNLQPLLEETTQFYAASTTNHTITFRSLTDA-CPLIEADEE 730

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           ++ Q+ + +L+NA+ +S  G  + +    D+    F+V++ G  IP+     +F++F  V
Sbjct: 731 KMKQLMNNLLNNAVKYSPFGGNIEVVLEADHHHVQFAVRDEGIGIPKSALAKLFDKFYRV 790

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            N+   +  G GLGL+I +  +  H G +++ S ++  +T   ++P
Sbjct: 791 DNSDSRKIGGTGLGLAICKEIVEGHDGEITVESVEKQGSTFTVKLP 836


>gi|209965762|ref|YP_002298677.1| signal transduction histidine-protein kinase BarA [Rhodospirillum
           centenum SW]
 gi|209959228|gb|ACI99864.1| signal transduction histidine-protein kinase BarA [Rhodospirillum
           centenum SW]
          Length = 780

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 164/351 (46%), Gaps = 43/351 (12%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           G+T+D       V  P+G+ +      R+ +KTEE         R +A   +    + DG
Sbjct: 377 GQTVD-------VLLPEGQAETHGRLARAFFKTEEPDAR-----RQMAGWRAVQGRKRDG 424

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RAL 555
             LF  ++T               LS ++++      P     L  + V +  +A+ RAL
Sbjct: 425 -SLFPVLVT---------------LSATLIDGQ----PMVVAALKDMTVIEQQKADLRAL 464

Query: 556 T----EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610
                E+ +A + A+  KN F+  +S+ELR+PL  IIGF++L+ T     ++  K+ +Y 
Sbjct: 465 ADEVGEQLKAAQAANHAKNRFLAALSHELRTPLNAIIGFSELVATDTDEHIDPEKRREYA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             ++ + T LL L++D+LDLA ++A  ++L       + L ++  + +   + +  I ++
Sbjct: 525 ADVAQAGTHLLALISDLLDLARIEANRIELEIEPCPPDGLTSDAVRMLGPSLRDKGIELE 584

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727
           V     L    ADR+ + QI + +L NA  F+ KG  V +    D    G   F+V++ G
Sbjct: 585 VAVAPDLPRVAADRRAVQQILTNLLGNAGKFTPKGGRVTVTVGLDRAVPGQVRFTVEDTG 644

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +P D    +   F  V +  R    G+GLGL+I    +   GG + I S
Sbjct: 645 CGVPADKLPLLGQPFVQVGDKRRASAPGLGLGLAISRGLVERMGGMLRIES 695


>gi|23502469|ref|NP_698596.1| sensory box histidine kinase [Brucella suis 1330]
 gi|81752215|sp|Q8FZ86|PDHS_BRUSU RecName: Full=Cell-division control histidine kinase pdhS
 gi|23348461|gb|AAN30511.1| sensory box histidine kinase [Brucella suis 1330]
          Length = 1035

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 175/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR---------RGVGLGLSIVESFI 765
            NGD +  V++ G  + +   +     F   NA  G++          G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|330465146|ref|YP_004402889.1| histidine kinase [Verrucosispora maris AB-18-032]
 gi|328808117|gb|AEB42289.1| histidine kinase [Verrucosispora maris AB-18-032]
          Length = 441

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 1/236 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR A E K+ F+ +VS+ELR+P+T IIG   LL  +    L  +Q + V  I 
Sbjct: 204 LDEKSVQLRSASESKSRFLANVSHELRAPVTAIIGLARLLTDAASDPLTLEQERQVGLIR 263

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S++ LL+LVN++LDLA  ++G ++ +++ + L  L  +++ ++       ++R+ V   
Sbjct: 264 SSASDLLSLVNELLDLAKAESGRLEPDWAEVDLRALFGQLRGTLRALHTVPDVRLVVEEP 323

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
               +   D   L Q+   +L N + F+++G  V L+A R    +   V + G+ IP + 
Sbjct: 324 PSPATIRTDEMLLAQVLRNLLHNGLKFTTRGE-VRLRAERSGDSWKLVVTDTGAGIPAEF 382

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + VF  F       +  G GLGL        L GG + +SS     ++    +P+
Sbjct: 383 HERVFEEFYQVPGPSRAGGTGLGLPYARRLATLLGGTLELSSEPGRGSSFTVSLPA 438


>gi|28869899|ref|NP_792518.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28853144|gb|AAO56213.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 1170

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQGELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +FSV+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFSVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|289662757|ref|ZP_06484338.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1057

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 136/265 (51%), Gaps = 11/265 (4%)

Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588
           QT +     T ++ A+R   L  +N+ +R ++E+      K+ F+ ++S+ELR+PL + +
Sbjct: 326 QTNVQLEERTQALEAQRQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 385

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
               LL  +K G+L+++Q +Y + I +S+  LL L+NDILDL+ ++AG ++L   T+   
Sbjct: 386 ILAKLLADNKDGTLSTEQVKYAQAILSSNNDLLTLINDILDLSKIEAGHVELADETVATT 445

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
            +L  ++++      +  + +++ +     +  V D QRL QI   +L+NA+ F+  G  
Sbjct: 446 SVLQRLRETFEPLARQKGLALEIAAVADTPTQLVVDNQRLQQILKNLLANAIKFTEHGKV 505

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +   A   G   F+V + G  I  +  + +F  F       +RR  G GLGLSI     
Sbjct: 506 SLSVQAHAPGRVRFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 565

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG +S+ S     +     +P+
Sbjct: 566 QRMGGSISVDSEPGRGSCFTLELPT 590


>gi|288962795|ref|YP_003453089.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288915061|dbj|BAI76545.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 448

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 130/256 (50%), Gaps = 3/256 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +T      + +  RAE+AL +  E    A+  K+ F+ ++S+ELR+PL  IIGF+ ++++
Sbjct: 186 RTRALMQEIQERRRAEQALIQAKEQAELANRAKSEFLANMSHELRTPLNAIIGFSSMMES 245

Query: 597 SKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +G L + K   Y + I  S   LL +++DILD+A ++AG ++++   + + D +    
Sbjct: 246 EIVGPLGHPKYLDYAKVIGKSGQHLLAVISDILDVAKIEAGKLEMHPQPMDVRDAVESSL 305

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             IA +  E  + +           + D  R+ QI   +L+NA+ F+  G +V L+   +
Sbjct: 306 LLIAERAKEGGLTLVQDIAPDTPRLLGDPVRVKQILLNLLANAVKFTPAGGSVTLRVRPE 365

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G  +  V ++G  +  +        F     +  RR  G GLGL +V SF+ L  G + 
Sbjct: 366 GGRILIEVADSGIGMSAEGIAIALQPFGQVDSQLSRRSGGTGLGLPLVRSFVELLNGTLD 425

Query: 774 ISSSDEGVTTINCRIP 789
           I S +   TTI+ R+P
Sbjct: 426 IRSREGEGTTISVRLP 441


>gi|241205034|ref|YP_002976130.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858924|gb|ACS56591.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 511

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++    +G L N    
Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI
Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I    + +L +  AD + + Q+   +LSNA+ F+ +G  + +K       G +I S+K+
Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S     T 
Sbjct: 421 NGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480

Query: 784 INCRIPSK 791
           +   +P+K
Sbjct: 481 VIAILPAK 488


>gi|126659637|ref|ZP_01730767.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619083|gb|EAZ89822.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 1070

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 130/251 (51%), Gaps = 12/251 (4%)

Query: 536 AQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +T+ T +  ++T+  +AE AL    E    A+  K+ F+  +S+ELR+PL  I+GFT +
Sbjct: 568 GKTIFTAIIRDITERKQAEEALKRAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQV 627

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++     SL  +  Q ++ I  S   LL L+NDIL++  ++AG   LN +   L  LL+ 
Sbjct: 628 MQRDH--SLKEEHKQNLDIIGRSGEHLLELINDILEMTKIEAGRTTLNKTQFDLYRLLDN 685

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LK 711
           ++  +  K  E N+++    +  L  ++  D  +L Q+   +L NA+ F+ +G  ++ +K
Sbjct: 686 LESMLHLKAEEKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIK 745

Query: 712 AARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFI 765
            ++ + +       F V++ G  I  +    +F  F  +   R    G GLGL I   F+
Sbjct: 746 TSQQSPNNQAIILTFEVEDTGPGIAIEEVDQLFEAFGQTETGRNSNEGTGLGLPISRKFV 805

Query: 766 NLHGGHVSISS 776
            L GG +S+SS
Sbjct: 806 ELMGGEISVSS 816


>gi|42522578|ref|NP_967958.1| phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
 gi|39575110|emb|CAE78951.1| Phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
          Length = 477

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 134/237 (56%), Gaps = 11/237 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTIL 620
           +++A++I+  FV + S+ELR+PLT+I G+ D LK   K G +  +  ++++ +S +   L
Sbjct: 246 MKRAEQIRMDFVGNASHELRTPLTSIKGYVDTLKEDVKTGQIQ-QAGKFLDIVSRNIDRL 304

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           ++LVND+L + T++A   +L    I    +   V   +A    E NI I+V  +G +  F
Sbjct: 305 MDLVNDMLSINTLEASNSELKLEMIHPLAISEHVVSELAVMAAEKNITIRV--NGDVPPF 362

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKSVF 739
           +AD +++ Q+   ++SNA+ +   G T+ ++  RD  ++ I  V ++G  IPE     +F
Sbjct: 363 LADARKVEQVLRNLVSNAVKYIPSGKTIQIRWERDIKEYIILRVIDDGQGIPEQHLDRLF 422

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPSKE 792
            RF     +G+ R   G GLGL+IV+  +  HGG V++ S  D+G   I C  P ++
Sbjct: 423 ERFY-RIDKGRTRDAGGTGLGLAIVKHIMQSHGGTVAVKSIVDQGSEFI-CSFPIRK 477


>gi|160887321|ref|ZP_02068324.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
 gi|156107732|gb|EDO09477.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
          Length = 657

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 140/264 (53%), Gaps = 9/264 (3%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P    + +    ++ D ++  + L E       AD++K+ F+ ++S+E+R+PL  I+G
Sbjct: 265 IAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVG 324

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++++  ++      ++ +Y+E I  +S +LL L+NDILDL+ +++G  ++++  + +  
Sbjct: 325 FSEIIAVTEG---EEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAG 381

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ EV++    KM ++N+ +KVI          DR R++Q+    LSNA+  + KGS  +
Sbjct: 382 LVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGSITL 440

Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
               +  G ++   V + G  I ++    +F RF       Q  G GLGLSI +S +   
Sbjct: 441 --GLKHEGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ--GTGLGLSICKSIVERL 496

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + ++S     +     +P +E
Sbjct: 497 GGRIEVTSELGQGSVFALYLPYQE 520


>gi|213967062|ref|ZP_03395212.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301385247|ref|ZP_07233665.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302063302|ref|ZP_07254843.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302130188|ref|ZP_07256178.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213928384|gb|EEB61929.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 1170

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQGELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +FSV+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFSVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1350

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 9/240 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +V++  +   AL +  +A  +A   K  F+  +S+E+R+PL  I+G+TDLL      +L 
Sbjct: 834  DVSERQQQAEALEQARDAAEQASRAKTDFLALMSHEIRTPLNGILGYTDLLLED--ATLG 891

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q +  E I ++   LL +VNDILD + ++AG ++L+    +L+ L++     +   + 
Sbjct: 892  EGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQVELDPRPFLLDALVDNTISVVRGFVG 951

Query: 664  ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
            +  I I  + D  +  + V D+ RL Q+   +L+NA+ F+  GS  +    L+ A     
Sbjct: 952  KKAIAISTVVDPDVPRTLVGDQDRLRQVLLNLLNNAVKFTHAGSVTLSVSCLEPAGATAA 1011

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
              FSV + G  IPED    +F RF   ++  G+   G GLGL+I ++ + L GG + + S
Sbjct: 1012 LRFSVTDTGIGIPEDKRGRLFQRFSQLDSSIGRDFGGTGLGLAISKNLVELMGGTIDVES 1071


>gi|239997215|ref|ZP_04717739.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 702

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T     +  L +K +    A + ++ F+ ++S+E+R+P+  + G  + L +S   SL
Sbjct: 284 VDITQLHMDKAMLQQKTDMAESALKARSEFLANMSHEIRTPIHGVQGMLEALISS---SL 340

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           NS Q ++      S+  LLN+VNDILD + +D+G M    S   L D + E         
Sbjct: 341 NSTQLEHATIAMKSADSLLNIVNDILDFSKIDSGNMSFEESPTNLADTIEEQVPMFTRLA 400

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           HE  I + V + G  G +F+AD+ R+ QI   +L+NA+ F+ +G   +   +   G   F
Sbjct: 401 HEKGIELSVSTKGVEGKTFIADKLRIGQILINLLNNAIKFTKEGKVTVETKSTRYGKGRF 460

Query: 722 SVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            VK    ++G  I E   K +F+ FV   +  QRR  G GLGLSIV   +  +GG + + 
Sbjct: 461 RVKLIVTDSGIGISEQQQKLIFSPFVQAENSTQRRYGGTGLGLSIVSQIVKHYGGKIEV- 519

Query: 776 SSDEGV 781
            SD GV
Sbjct: 520 CSDLGV 525


>gi|254296534|ref|ZP_04963990.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 406e]
 gi|157806537|gb|EDO83707.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 406e]
          Length = 770

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D      R+ +  
Sbjct: 128 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 183

Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             ++     +  + S   +S E H   W  P +GQ + +   ++P         G + + 
Sbjct: 184 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 240

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 241 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 296

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 297 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 352

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 353 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 394

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 395 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 451

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD +++  G ++L+   + L  ++N+V  ++      + I + V           D +RL
Sbjct: 452 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 511

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F     
Sbjct: 512 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 571

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 572 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 603


>gi|206889312|ref|YP_002248455.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741250|gb|ACI20307.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 620

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 182/368 (49%), Gaps = 33/368 (8%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ID++++G+ V   DG I   NPA   ++   E  +  G +++ +     +   +S   + 
Sbjct: 259 IDNMADGLIVVDKDGVINHINPAASEMFGKAEFEMI-GKNVKILGKELDKLVKKSLNTEE 317

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             +   +  +ER       + ++ S+ +        A+ +L       SV   R +T++ 
Sbjct: 318 IVSNEINLVNERVG-----KAVAKSIKKEYFSEESEAKGIL------GSVILIRDITQEK 366

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEY 612
           E     D +K  F+  VS+ELR+PLT+I+GF +++           L   N + S+ V  
Sbjct: 367 EV----DRLKTEFITVVSHELRTPLTSILGFIEIINKKFTENILPHLDMNNFRLSKAVNK 422

Query: 613 ISASSTILLN-------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           I+ +  I+L+       L+ND+LD++ +++G    N+  I +  ++ +  +++++   + 
Sbjct: 423 INKNFKIILSEGERITSLINDVLDISKLESGKAIWNFKEISIQGVITDAYKALSSLFEQK 482

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I   +     L    ADR+RL+Q+   +LSNA+ F+ KG  V  K A +  + + SV++
Sbjct: 483 GIPCYIEIQPSLPFINADRERLIQVVINLLSNALKFTEKG-YVKCKTALNADEIVVSVED 541

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  IPE+  + +F +F  V +  RG+ +G GLGL+I +  +  HGG + + S     +T
Sbjct: 542 SGIGIPEEEKERIFEKFKQVGDLIRGKPKGTGLGLAISKQIVEAHGGKIWVESELGKGST 601

Query: 784 INCRIPSK 791
               IP K
Sbjct: 602 FYFTIPLK 609


>gi|86356892|ref|YP_468784.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86280994|gb|ABC90057.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 513

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 9/251 (3%)

Query: 543 VNVTDSVRAERALTEKNEAL--RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           V++   +RAE     +N A     A++ K+ F+  VS+ELR+PL  I+GF+D+L     G
Sbjct: 218 VSIEQQLRAE----AQNRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFG 273

Query: 601 SL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              N +Q +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A
Sbjct: 274 KFENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILDAFDISSSVRSCESMLA 333

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +     + +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G  
Sbjct: 334 LQAKTKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSVDAAARDGIL 393

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +V + G  IP D    +   FV   +   RR  G GLGLS+V+  + LHGG+ +I+S 
Sbjct: 394 KLTVSDTGIGIPADKLAMLGQPFVQIQNDYTRRFEGSGLGLSLVKGLVALHGGNFAIASR 453

Query: 778 DEGVTTINCRI 788
               T I   I
Sbjct: 454 PGEGTIITVEI 464


>gi|330875153|gb|EGH09302.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 1170

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQGELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +FSV+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFSVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|218130832|ref|ZP_03459636.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
 gi|217987176|gb|EEC53507.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
          Length = 912

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 195/412 (47%), Gaps = 52/412 (12%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VTS+    ++W F +++T ++  E +     +V  +TI++L  G+ V       K     
Sbjct: 358 VTSDEGEYSLWAFGKDITQRIKDEQQIKRFSQVMDKTIENLPAGIVV-------KDIKNN 410

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           F+ L++  E      ++ RNI         E+ G D F      FD  +K  +  +E+  
Sbjct: 411 FKYLYRNRE------SYNRNIPM------KEALGKDDFD--FYPFDIAQKKRKQDMEIAE 456

Query: 523 DSVLEYSI-------------------IPLPNAQTMLTFV--NVTDSVRAERALTEKNEA 561
             + ++ I                   I   +   +L  +  ++T+  R ++ L    E 
Sbjct: 457 TGIEKHWITEEYDQNGKSIILDKRKMRIESKDFSPILLSIEWDITEMERMKQELLVAKEK 516

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              +D++K++F+ ++S+E+R+PL  I+GF+ ++  S   +   ++  + + + A++  LL
Sbjct: 517 AEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDAEERKSFYDIVEANNERLL 573

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+N+ILDL+ ++AGI++   + + L+ L  E+  ++  +  +    I   SD ++ +  
Sbjct: 574 QLINEILDLSKIEAGIVEFTITPVRLHSLCREIYDALKFRCPQGVKLIYEPSDEEI-TIE 632

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
            D+ R+ Q+ S ++ NA  F+++G   +    R  GD I F V + G  I       VF 
Sbjct: 633 GDKNRIFQVISNLIGNAFKFTTQGK--VSYGYRRKGDGIEFHVSDTGIGIEAGKLDKVFE 690

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RFV      Q  G GLGLSI ++ I   GG +S SS     TT    +P K+
Sbjct: 691 RFVKMNSFAQ--GTGLGLSICKTIIERLGGTISASSEMGKGTTFTFTLPEKQ 740


>gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
 gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
          Length = 2783

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 91/358 (25%), Positives = 171/358 (47%), Gaps = 21/358 (5%)

Query: 443  LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
            ++EGV V     +I L NPA   +     + L  G  + ++A   +   +   G  ++  
Sbjct: 2427 MTEGVIVLDTTNQITLFNPAAEQMLDIAAD-LVLGQPLAHLAEVGNDDISRRRGQTIYQG 2485

Query: 503  IITSFDDERKSLQGTLELLSD-----SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            I+      R++ QG      D      V+  +I P+    T    V V       R +T 
Sbjct: 2486 ILHGLRRMRET-QGIFSTSIDLTDPTQVIAVNIAPVRGLDTDYGTVAVL------RDITR 2538

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            + EA    D+ K  F+  VS+ELR+PLT I G+ D+L  +   +L   Q  Y+  I  ++
Sbjct: 2539 EIEA----DKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQLSYLNIIKNNT 2594

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              L  L+ DIL+ +  D+   KL ++ + +  ++ EV QS+  +     +++++ +   L
Sbjct: 2595 NRLRALIEDILEFSRPDSK-KKLTFTQVDIPTVIEEVVQSLRLEYERKGMKVRIDTSPSL 2653

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
               +AD++R+ QI   + SNA+ ++ +G ++ ++A  +  + +   V++ G  +  +  K
Sbjct: 2654 PPVIADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFVNRANMMQIEVEDTGVGMSPEQLK 2713

Query: 737  SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +F  F    N  R    G GLGLSI +  + +HGG + ++S     +T +  IP ++
Sbjct: 2714 KLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFSFAIPLQQ 2771


>gi|327405881|ref|YP_004346719.1| multi-sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327321389|gb|AEA45881.1| multi-sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 1089

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 175/358 (48%), Gaps = 31/358 (8%)

Query: 446 GVAVFGPDGRIKLSNPAFRSL--WKTEENRL-SPGTHIRNIAATCSRYYNESDGWDLFAA 502
           G+ +    G I   N  F  L  W + E  L S GT I N A+  +R        +L + 
Sbjct: 457 GITITNAHGIISWINEGFVRLYGWNSSEEFLESKGTSIYN-ASGLTR-------AELSSF 508

Query: 503 IITSFDDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFV-----NVTDSVRA-ER 553
           I  + D++   +  + + L +   +Y   S+ P+ + Q  L F+     ++TD + A E 
Sbjct: 509 IEKAVDEKESIIFQSFKELKNQEQKYIQTSLTPVFDEQDELKFLVYVDTDITDLLEAREL 568

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ EK +A   A + +  F+ +VS+E+R+P+  IIG T  L   KL   +  Q + ++ +
Sbjct: 569 AIREKRKA-ENALKTQELFLANVSHEIRTPMNGIIGLTRQLNDEKL---SHSQQEILDTL 624

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S+  LL++VND+LD++ + AG M   Y    L DLLN    SI+ +  E  +R  +  
Sbjct: 625 DSSANGLLHVVNDLLDVSKIRAGKMTFEYVRFSLRDLLNTFATSISYRSEEKKLRFNLEF 684

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG--DFIFSVKNNGS 728
             KL ++ + D  RL QI   I+ NA+ F+ +GS    +    + NG     F +K+ G 
Sbjct: 685 TEKLPNYIIGDPIRLNQILLNIVGNAIKFTIEGSITLKVYSIEQKNGMERIHFEIKDTGI 744

Query: 729 SIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            IP      VF  F+    HR +   G GLGL I +S +   GG + + S +   TT+
Sbjct: 745 GIPTHKQDFVFENFMQIEDHRTRTTSGTGLGLGIAKSLVEALGGEIHLFSQEGNGTTV 802


>gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01]
 gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01]
          Length = 1059

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           ++  E A   K+ A+ +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L   Q 
Sbjct: 375 TLAVEDAEKAKDHAI-QASKAKSSFLANMSHEIRTPLNGVIGISEILADT---PLTPTQR 430

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            YV+ I  SS +LL+L+NDILD + +++G++ ++  +  + + + ++   +A K  E  I
Sbjct: 431 DYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKI 490

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
            + V IS       + D  RL QI    +SNA+ F+++G   +    L+ + DN    F+
Sbjct: 491 SVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIKTLEQSDDNVTIRFA 550

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           V++ G  I +   K +F  F        R+  G GLGL+I    + L GG + + S
Sbjct: 551 VRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDS 606


>gi|119509677|ref|ZP_01628823.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119465696|gb|EAW46587.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 896

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 133/259 (51%), Gaps = 15/259 (5%)

Query: 541 TFVNVTDSVRAER-ALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           T ++    + AER  L ++ +A R    KA++ K+ FV  VS++LRSPL  I+G+  LL+
Sbjct: 642 TDIDHRKQLEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPLNAILGWAKLLR 701

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T +L       +  +  I  ++     L+ D+L+++ +  G ++L    +   +L+N VK
Sbjct: 702 TRQLPP--DTVTNALATIERNAQSQEKLLEDLLNMSRILRGQLQLEVCPV---NLVNIVK 756

Query: 656 QSIAT---KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            S+ T     H   I +  + D  +   V D  RLLQ+   +LSNA+ F+  G  V ++ 
Sbjct: 757 ASVETAYPSAHAKGIHLASVIDESIPPIVGDTHRLLQVLGNLLSNAIKFTPSGGRVQVQL 816

Query: 713 AR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           A+ D+ + +  V + G  I  +    VF+R+       +  G+GLGL+I    + LHGG 
Sbjct: 817 AKSDDSEILIQVSDTGLGIKPEFLPHVFDRYRQAHCTAKHSGLGLGLAIARHLVELHGGT 876

Query: 772 VSISSSDEGV-TTINCRIP 789
           +   S  EG+  T + ++P
Sbjct: 877 IQAHSQGEGLGATFSIKLP 895


>gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
 gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
          Length = 951

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 128/252 (50%), Gaps = 6/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++V+  VR E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    
Sbjct: 440 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 496

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL S  ++ V  +  SS +LL +++DILD + +++  +K+        +++N +  +   
Sbjct: 497 SLPSDANRLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPGEFAPREVINHIVSNYLP 556

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    D  +    + D  RL Q+ S +LSNA+ F+  G  V   A  D+G  
Sbjct: 557 LVVKKRLVLYCYIDPNVPFRLLGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACCDDGYL 616

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           +F +++ G  I       +F+ F       QR  +G GLGL+I E  ++L  G ++I S 
Sbjct: 617 VFKMRDTGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESE 676

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 677 PGLGSEFGIRIP 688


>gi|167851254|ref|ZP_02476762.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei B7210]
          Length = 757

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 217/512 (42%), Gaps = 81/512 (15%)

Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
           YE +L +LT  + + D++  L + N S   L   D   +   P  D      R+ +    
Sbjct: 115 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGRGA 170

Query: 368 QLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMFEN 418
           ++     +  + S   +S E H   W  P +GQ + +   ++P         G + +  +
Sbjct: 171 RVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRD 227

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE------- 471
           ++++ +       L ++    ++   + +   G + RI   NPA R ++  +E       
Sbjct: 228 ISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCD 283

Query: 472 -----------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDERK 512
                      N   P +       I N+   C R     DG  + A +  S  FD+   
Sbjct: 284 VAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER-- 337

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---EIK 569
                     D+ +  S+      +       V  S+R  R      +A R+AD    +K
Sbjct: 338 ----------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNRLK 381

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           +  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD
Sbjct: 382 DELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILD 438

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRL 687
            +++  G ++L+   + L  ++N+V  ++      + I + V  +  LG+ +   D +RL
Sbjct: 439 ASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGERL 496

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F     
Sbjct: 497 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 556

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 557 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 588


>gi|269966474|ref|ZP_06180558.1| putative histidine kinase [Vibrio alginolyticus 40B]
 gi|269828931|gb|EEZ83181.1| putative histidine kinase [Vibrio alginolyticus 40B]
          Length = 1060

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 139/247 (56%), Gaps = 13/247 (5%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + ML+ + +T +   E A   K++A+ KA + K+SF+ ++S+E+R+PL  +IG +++L  
Sbjct: 374 ERMLSRLKLTQA--KEDAEQAKDDAI-KASKAKSSFLANMSHEIRTPLNGVIGISEVLSD 430

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   SL + Q  YV+ I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++  
Sbjct: 431 T---SLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIAS 487

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            I+ K  E  I ++V IS       + D  R+ Q+    +SNA+ F+ +GS  +    R+
Sbjct: 488 IISPKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITRE 547

Query: 716 --NGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
             NG+ +  FSVK++G  I     K +F  F    +   R+  G GLGL+I    + L G
Sbjct: 548 IKNGEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMG 607

Query: 770 GHVSISS 776
           G + + S
Sbjct: 608 GEIQLES 614


>gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9]
 gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9]
          Length = 1205

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++     +E A+    EA  +A   K+ F+ ++S+E+R+P+  I+G T L   ++L 
Sbjct: 536 TLADIEARKASEAAILSAKEAAEEASRAKSDFLANMSHEIRTPMNGILGMTRLCLATEL- 594

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + +Q +Y++ + +S+ +LL ++NDILD + ++AG ++L+ +   L +L+ +  Q +A 
Sbjct: 595 --SEEQREYLDMVDSSAQLLLTVINDILDFSKIEAGKLELSATDFSLRELVRDTLQPLAL 652

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           K  E  + I   I      S  AD  RL Q+   +L NA+ F+  G   +    + +G  
Sbjct: 653 KAGEKGLEILCDIPPSLADSRHADATRLRQVLGNLLGNAVKFTEVGEVELQVREQADGLL 712

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            FSV++ G  I  +    VF  F        RR  G GLGL+I    + + GG + + S
Sbjct: 713 RFSVRDTGIGISREGLAQVFESFSQADSSISRRYGGTGLGLTISSRLVGMMGGTLQVES 771


>gi|167829786|ref|ZP_02461257.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 9]
          Length = 766

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D      R+ +  
Sbjct: 124 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 179

Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             ++     +  + S   +S E H   W  P +GQ + +   ++P         G + + 
Sbjct: 180 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 236

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 237 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 292

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 293 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 348

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 349 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 390

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 391 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 447

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD +++  G ++L+   + L  ++N+V  ++      + I + V           D +RL
Sbjct: 448 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 507

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F     
Sbjct: 508 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 567

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 568 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 599


>gi|116252525|ref|YP_768363.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257173|emb|CAK08268.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 511

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 9/248 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++    +G L N    
Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYK 301

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI
Sbjct: 302 EYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNI 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKN 725
            I    + +L +  AD + + Q+   +LSNA+ F+ +G  + +K       G +I S+K+
Sbjct: 362 AISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYI-SIKD 420

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S     T 
Sbjct: 421 NGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTE 480

Query: 784 INCRIPSK 791
           +   +P+K
Sbjct: 481 VIAILPAK 488


>gi|148656419|ref|YP_001276624.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148568529|gb|ABQ90674.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 905

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 122/230 (53%), Gaps = 17/230 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D +K  F+  VS+ELR+P+T+I GFT LL    LG +N  Q +++  I +++  ++ +
Sbjct: 661 ESDRLKTEFIGTVSHELRTPMTSIKGFTQLLVMGNLGPVNETQREFLNIIQSNAERMIAI 720

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+LD+  ++ G ++L    I + + L++V   + TK+HE    + +     L    AD
Sbjct: 721 INDLLDITKIETGSVELEIRPIHVAETLSKVLLDLQTKVHERQQTLTLSLPAGLPLVRAD 780

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKA-----------ARDN---GDFI-FSVKNNGS 728
             R  QI   ++SNA+ ++ +G ++ ++A            RD    G +I   V++ G 
Sbjct: 781 AHRFNQILFNLVSNAVKYTPRGGSITIEAREVTAEAVPEDERDGLRPGRYIQIDVRDTGV 840

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I  D    ++ RF    N  + +  G GLGLS+V+  + L GG + + S
Sbjct: 841 GIAPDDVPRIWERFYRTENPLKVEAGGTGLGLSLVKPLVRLLGGRIWVES 890


>gi|88802612|ref|ZP_01118139.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P]
 gi|88781470|gb|EAR12648.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P]
          Length = 907

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 132/246 (53%), Gaps = 17/246 (6%)

Query: 558 KNE---ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           KNE   A  +A+E+   K+ F+ ++S+E+R+PL  IIGFT +L      +   KQ   + 
Sbjct: 389 KNELILAKEQAEELAGFKDQFLANMSHEIRTPLNGIIGFTKILLRD---NATKKQRHQLN 445

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS ILL +VNDILDL+ ++AG M L  + + L +L+N V  +   ++ E    +  
Sbjct: 446 AIKTSSDILLVVVNDILDLSKIEAGKMILEKTNLKLPNLVNSVLSTFELRIGEKEQTLNT 505

Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSVKN 725
             D  +  + + D  R+ QI   ++ NA+ F++ G T+     +L    +  +   SV +
Sbjct: 506 RFDKNIPKWLIGDTVRINQILLNLIGNALKFTAVGGTINVHLNLLHQDENKVNVEISVSD 565

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP D  K++F+ F+ ++    R+  G GLGL+IV+  I+L  G +S+ S +   +T
Sbjct: 566 TGIGIPSDKIKNIFDPFIQSSDNTARKYGGSGLGLNIVKQLIDLMHGSISVKSQESIGST 625

Query: 784 INCRIP 789
               IP
Sbjct: 626 FTLTIP 631


>gi|329911607|ref|ZP_08275576.1| two-component hybrid sensor and regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545833|gb|EGF30951.1| two-component hybrid sensor and regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 654

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 131/247 (53%), Gaps = 18/247 (7%)

Query: 543 VNVTDSVRAERALTEKNEA---LRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +++T S + E A  +  EA    R A E    IK+ F+  +S+ELR+PL +I+G+T +L+
Sbjct: 242 LDITASKQIEEAHNDSAEASHMARAAAEHASLIKDEFLSTLSHELRTPLNSILGWTQVLQ 301

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +++ K    +  I  S+     L++D+LD + + AG + LN   +  ND+++   
Sbjct: 302 RGST-NMSDKAITALGTIERSARQQARLIDDLLDASAIMAGKIHLNLQPVRCNDVISASV 360

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
              A      NI++ V  D    +  AD+ RL QI  ++LSNA+ FS   STV ++    
Sbjct: 361 ALSAPLAASRNIQLDVRIDEPGMAIEADQSRLQQILCRLLSNAIKFSPNDSTVTIRQMSS 420

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHG 769
           N   I ++ ++G  I      S+F RF      ++ +H     G+GLGLSIV+S I LHG
Sbjct: 421 NHRVIITITDSGQGIAPAFLPSLFARFSQADGSITRSH----MGLGLGLSIVKSLIELHG 476

Query: 770 GHVSISS 776
           G VS +S
Sbjct: 477 GIVSATS 483


>gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01]
 gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01]
          Length = 1058

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 139/247 (56%), Gaps = 13/247 (5%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + ML+ + +T +   E A   K++A+ KA + K+SF+ ++S+E+R+PL  +IG +++L  
Sbjct: 372 ERMLSRLKLTQA--KEDAEQAKDDAI-KASKAKSSFLANMSHEIRTPLNGVIGISEVLSD 428

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   SL + Q  YV+ I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++  
Sbjct: 429 T---SLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIAS 485

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            I+ K  E  I ++V IS       + D  R+ Q+    +SNA+ F+ +GS  +    R+
Sbjct: 486 IISPKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITRE 545

Query: 716 --NGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
             NG+ +  FSVK++G  I     K +F  F    +   R+  G GLGL+I    + L G
Sbjct: 546 IKNGEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMG 605

Query: 770 GHVSISS 776
           G + + S
Sbjct: 606 GEIQLES 612


>gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 656

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 135/257 (52%), Gaps = 15/257 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T  +RAE+ L +     R+A E K +F+ ++S+E+R+P+  IIG  +LL+       N
Sbjct: 151 NITGQIRAEQKLKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHE---DPN 207

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  +  SS +L+ +++DILD++ ++AG + L      +  +L++   S+ T++ 
Sbjct: 208 QTQKRYLATLRNSSNVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCL-SVYTQIS 266

Query: 664 ENNIRIKVISDGKLGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               R  ++  G++ + V      D  RL Q+   ++SNA  F+ +G  ++     +  D
Sbjct: 267 N---RKNILLTGRVDAAVPIQIQGDSSRLQQVLMNLISNAFKFTDQGHILVRVECTEQKD 323

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            + FSV+++G  I E+   S+F RF  V  +      G GLGL+IV   + L GG V I 
Sbjct: 324 RLRFSVEDSGVGIAEEAQASLFERFNQVDQSASRSSGGTGLGLAIVREIVELWGGDVWIR 383

Query: 776 SSDEGVTTINCRIPSKE 792
           S      T    IP ++
Sbjct: 384 SRSGHGATFFFDIPVQQ 400


>gi|163846453|ref|YP_001634497.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524228|ref|YP_002568699.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163667742|gb|ABY34108.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448107|gb|ACM52373.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 466

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 10/234 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL++AD+ +      +++ELR+PL+ I G  + ++      +    ++ +E +     +
Sbjct: 218 EALQQADQQRRQLTADIAHELRTPLSIIKGRLEGIQDG----VYEADAEQIEALLTEVAL 273

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ND+  LA  DAG + L    +    L+NE  +S     +E N+R+    D  L  
Sbjct: 274 LERLINDLHLLALADAGQLPLYREVVSPQMLVNEAIRSFTPAANERNVRLSATIDDNLPD 333

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738
              D QR+ Q+   ++ NA+  +  G  VI+ A RD     F V++ G+ I P D+   +
Sbjct: 334 IEVDPQRIAQVLGNLIGNALRHTPAGGEVIVSAHRDESGIRFEVRDTGAGIDPADL-PYI 392

Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF   A R + R   G GLGL+I    +  HGG +  +S+ +  TT++ R+P
Sbjct: 393 FDRFY-KADRARSRSSGGAGLGLAIARRLVEAHGGQIWATSALQQGTTVSFRLP 445


>gi|166364910|ref|YP_001657183.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166087283|dbj|BAG01991.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 669

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 10/233 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ L E  EA  KA++ K+ F+ ++S+ELR+PL  I+GFT L+  S+  S++S+  QY+
Sbjct: 189 AEKELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLI--SRDSSISSEYRQYL 246

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E ++ S   LL L+NDIL+++ ++AG    N S   L  LL+ + + + ++     + + 
Sbjct: 247 EIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKALSLI 306

Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKN 725
                 L  ++  D  +L Q+   +L N + F+  G   +     +   D+   ++ +++
Sbjct: 307 FDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDDQRLLWEIED 366

Query: 726 NGSSI-PEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  I PE++ K +F  F  +   R  ++G GLGL I + F+ L GG + +SS
Sbjct: 367 TGLGIAPEEIYK-LFQPFNQTETGRKSQQGTGLGLPISKKFVELMGGAIGVSS 418


>gi|260177204|gb|ACX33927.1| putative response regulator receiver sensor signal transduction
           histidine kinase [uncultured prokaryote AT5]
          Length = 378

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 128/245 (52%), Gaps = 4/245 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +R  R    +N+ L  A   K+ F+  +S+ELR+PL  IIG T+++ ++       K  +
Sbjct: 129 LREARRREAENQRLEAASHNKSQFLADMSHELRTPLNAIIGLTEMMVSNAARFGTEKALE 188

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  ++A+ T LL+L+N++LDL+ ++AG ++LN   + L  +++EV  +      +N  R
Sbjct: 189 PLRRVNAAGTHLLSLINEVLDLSKIEAGKLELNPEPVNLARVIDEVIGTAGQLAEKNQNR 248

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI-FSVKNN 726
           + V +   LG+F AD  RL QI   +LSNA  F+ +G   + ++   D  D++  +V + 
Sbjct: 249 LIVEAQDNLGAFTADPLRLKQILLNLLSNACKFTKEGDVALRVRKVADGRDWVELAVADT 308

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +  +    +F  F        RR  G GLGL++      + GG V+++S     +  
Sbjct: 309 GIGLTAEQQAKLFQEFTQADSLTARRYGGTGLGLALSRKLARMMGGDVTVASEPGKGSVF 368

Query: 785 NCRIP 789
             R+P
Sbjct: 369 TVRLP 373


>gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
 gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
          Length = 911

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 184/428 (42%), Gaps = 54/428 (12%)

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           LP G+  H  +     G  I + E    Q  +    N L       ++ +SE   ++   
Sbjct: 437 LPGGEANHTRII----GVAIDVTERKGAQARVAAAENRLRAA----LESMSESFVLWDSR 488

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R+ L N  FR L+   +  L PG     +    +R            AI T        
Sbjct: 489 QRLVLWNRKFRDLFDFTDGMLKPGMSYDAVEQAAAR------------AIKTVHGGSEGK 536

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-DEIKNS- 571
               +EL +   L YS  P  +   +    ++TD    E ALTE    LRK  D++K S 
Sbjct: 537 AAYEIELSNGRWLHYSDRPTADGGLVSVGADITDLKHHEAALTENESQLRKTVDDVKRSQ 596

Query: 572 --------------------------FVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NS 604
                                     F+ ++S+ELR+PL  I GF++++     G L + 
Sbjct: 597 ARIADLAKKYEEEKIRAEEANRSKSEFLANMSHELRTPLNAINGFSEIMMQEMFGPLGDD 656

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +   Y++ I +S   LL L+NDILD++ ++AG M+L       ++L+ +  + +  +  E
Sbjct: 657 RYVGYMKDILSSGRHLLELINDILDMSKIEAGKMQLQPEPTDASELVEQSIRIVRGRAEE 716

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             ++++  +SD  L     D +   Q+   ++SNA+ F+ +G  V ++         F V
Sbjct: 717 KQLKLRADVSD--LPEIEVDPRAFKQVMINLVSNAVKFTPEGGRVTVRGFLSGLGVAFQV 774

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I +D    +   F  + + H    +G GLGL++ +S I LHGG +SI S     
Sbjct: 775 SDTGIGIAKDDLPRLGRPFEQIESQHSKSFQGSGLGLALSKSLIELHGGTLSIDSVLGEG 834

Query: 782 TTINCRIP 789
           TT++  +P
Sbjct: 835 TTVSVVLP 842


>gi|254448754|ref|ZP_05062211.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
 gi|198261595|gb|EDY85883.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
          Length = 882

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 14/253 (5%)

Query: 551 AERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           A   L +KNEAL         A++ K+ F+ ++S+E+R+PL  IIGF D+L  +K+   +
Sbjct: 270 ATSELKQKNEALTIAQAEAVSANKAKSVFLANMSHEIRTPLNGIIGFLDMLNRTKV---D 326

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+Q+QY+     ++  L+ L+N ILD + +++G M L    I ++DLL E+    A    
Sbjct: 327 SQQNQYISTAQVAAKSLIQLINGILDFSRIESGKMPLKQDEIPIDDLLAEIYDLHAPSAF 386

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721
           E  + +       L S  + D     QI   +LSNA+ F+  G   + +    +N     
Sbjct: 387 EKGVELLFFPAQSLPSTLMLDANVFKQIIGNLLSNAIKFTQHGDIQLHMNYFAENRAIAI 446

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV ++G  I +++   +FN F    +   R   G GLGL+I  S + LHGG +S  +  E
Sbjct: 447 SVLDSGVGISQEVINDIFNEFEQGDNTTARVHGGSGLGLAITRSLVELHGGSISAHTRPE 506

Query: 780 GVTTINCRIPSKE 792
           G    +  I + +
Sbjct: 507 GGARFDLTIQASQ 519


>gi|150395544|ref|YP_001326011.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            medicae WSM419]
 gi|150027059|gb|ABR59176.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            medicae WSM419]
          Length = 1138

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 8/254 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++ +   G + 
Sbjct: 882  DITQWKRTEEELRNAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIG 941

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Y+EY   I  S   +L++VND+LD++ ++AG M L++  + LN+ ++E    +  
Sbjct: 942  --HPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQP 999

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+    G +   VAD + + QI   IL+NA+ F+  G  +++  + + NG  
Sbjct: 1000 QANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSV 1059

Query: 720  IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            I  +++ G  +  +        F  V+   R +  G GLGL + ++    +    +I+S+
Sbjct: 1060 ILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMTEANRAQFAITSA 1119

Query: 778  DEGVTTINCRIPSK 791
                T +    PS+
Sbjct: 1120 PNEGTLVEVSFPSQ 1133


>gi|134281863|ref|ZP_01768570.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
 gi|134246925|gb|EBA47012.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
          Length = 769

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 125/514 (24%), Positives = 217/514 (42%), Gaps = 85/514 (16%)

Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLP 366
           YE +L +LT  + + D++  L + N S   L   D   +   P  D    +  R A    
Sbjct: 129 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRA 188

Query: 367 EQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             L      E++    +S+  E H   W  P +GQ + +   ++P         G + + 
Sbjct: 189 SAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685
           LD +++  G ++L+   + L  ++N+V  ++      + I + V  +  LG+ +   D +
Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGE 508

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F   
Sbjct: 509 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRA 568

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 569 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|149192072|ref|ZP_01870297.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
 gi|148834097|gb|EDL51109.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
          Length = 939

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        D L EV    AT  HE  + + +  D K+ S  
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFQDSLEEVVALQATSAHEKGLELTLKVDSKIPSGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G+   +V LK+ + D  +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELKSQKEDRVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVGQMGGEISLTS 502


>gi|32477063|ref|NP_870057.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32447611|emb|CAD79210.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 652

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 11/252 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   QT L  VN     R ++   + N  L +A+ +K  F+ ++S+ELR+PL +IIGF++
Sbjct: 366 LTETQTQLQSVNRELDARVDQ-FAQLNLQLYEANRLKTDFLANMSHELRTPLNSIIGFSE 424

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+   + SL+ KQ +Y   I  S  +LL ++NDILDLA V+AG M++  S   L+ L+ 
Sbjct: 425 VLQ--GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEAGKMEVRRSEFQLSRLVG 482

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                I +   + NI + V     L     D  +L QI + +LSNA+ F+ +G  + ++ 
Sbjct: 483 AQCDMIQSLSEDKNISLSVEVPEDLPVAYQDPNKLGQILNNLLSNAIKFTPEGGMITVRV 542

Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAH----RGQRR---GVGLGLSIVESF 764
              + D F  SV + G  + ++    +F +F  +       G  R   G GLGLSIV+  
Sbjct: 543 VDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGLTREFAGTGLGLSIVKEL 602

Query: 765 INLHGGHVSISS 776
             L GG +   S
Sbjct: 603 AVLLGGEIDFQS 614


>gi|311234406|gb|ADP87260.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 742

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E    A+  K++F+ ++S+E+R+PL  ++G  DLL+ +    L++ Q++Y+    
Sbjct: 348 LREAKEKADNANAAKSAFLANMSHEIRTPLNGLLGMLDLLEAT---GLDAGQAEYLGMAR 404

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L +L+ DILDL+ ++AG + L      L+D+L  ++++ A    E  + ++   D
Sbjct: 405 RSGRRLTDLLGDILDLSRIEAGKLVLAEQPFTLSDVLASIRETFAPLSREKGLPLEFALD 464

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSS 729
              G F+ D  R+ QI   ++ NAM F+++G        +L         +F V ++G  
Sbjct: 465 AVPGPFLGDAVRVRQILLNLVGNAMKFTNRGQMKLEVKTLLPMPDGRARILFMVHDSGCG 524

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPE+   S+   F  V      + +GVGLGL+I  + ++ + G +++ S
Sbjct: 525 IPEEQVGSICEPFTQVEAPLTKRYQGVGLGLAITRTLVHAYDGTLTVDS 573


>gi|311893956|dbj|BAJ26364.1| putative two-component hybrid sensor and regulator [Kitasatospora
           setae KM-6054]
          Length = 603

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR A E K+ F  +VS+ELR+P+  ++G  +LL+T        +  Q +  I+
Sbjct: 221 LDEKSRQLRDASEAKSRFWANVSHELRTPVNAVVGLAELLRTDADAPAEERARQ-LSLIA 279

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVIS 673
            S   LL LV+++LD+A  ++G ++  ++ + L  +L+ ++ ++         +RI    
Sbjct: 280 DSGRTLLALVDELLDVAKAESGTLEPQWAPLDLRAVLSHLEGTLRGLARPGVALRIGPAP 339

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSS 729
           DG   + + D   L+++   +LSNA+ F+  GS     +++   D   D + +V + G  
Sbjct: 340 DGTE-ALLGDETMLVRVLRNLLSNALKFTEHGSVRLDAVVEPHPDGAPDLVLTVSDTGVG 398

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP D  + VF  F  V   H+  RRG GLGL        + GG + + S     T+I  R
Sbjct: 399 IPADQHERVFEEFYQVRGPHQRGRRGTGLGLPYARRLTEILGGTLHLDSVPGRGTSITVR 458

Query: 788 IP 789
           +P
Sbjct: 459 LP 460


>gi|86143379|ref|ZP_01061781.1| histidine kinase response regulator hybrid protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85830284|gb|EAQ48744.1| histidine kinase response regulator hybrid protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 685

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 144/277 (51%), Gaps = 27/277 (9%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVN------VTDSVRAERALTEKNEALR-------KADE 567
           L+D  L   +I L  A  +L+F N       + ++R  + L E N +L        +A  
Sbjct: 257 LADYALGVGLI-LSLAIGLLSFFNRNAQNAASRTLRMNKKLKELNLSLEEQTLKANQASI 315

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTILLNLVN 625
            K  F+ ++S+E+R+PL  I+G +DL+     GS N+K  +  Y+  +  SS  LLNL+N
Sbjct: 316 AKTEFLSNMSHEIRTPLNAIVGISDLI-----GSGNNKFEEEHYLSLLKQSSKTLLNLIN 370

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DIL L  +++G  ++ +      +++  ++Q     +   ++ ++V+ D K  S+V  DR
Sbjct: 371 DILRLDKMESGFSEVAHIEFCPLNIIENLRQFNLQPVKSKDLDLEVVVDTKTKSYVLGDR 430

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNR 741
            +  QI + I+SNA+ F+ KG   I  + R   + +     V + G  IPED    +F+R
Sbjct: 431 AKFEQILNNIVSNAIKFTQKGKIAIHYSERQENNKVAVEIRVTDTGIGIPEDKINDIFDR 490

Query: 742 FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F+      R +  G G+GLSIV+  + L GG +S+ S
Sbjct: 491 FIQLDTGMRKKHSGGGIGLSIVKHLVELLGGTISVKS 527


>gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 588

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  + A+ +K+ F+  VS+ELR+PL  I+G +D+LK        +K S  +  I  ++ I
Sbjct: 193 EQAQTANRLKDEFLATVSHELRTPLNVILGHSDILKDPATSPEEAKVS--INAIHRNAQI 250

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            + ++ND+LD++ + +G ++L+   I +  ++    +S+       NI+++V    +L S
Sbjct: 251 QVQIINDLLDVSRIISGKLQLHVKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPERLKS 310

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D +RL Q+   +LSNA+ F+ KG  + +K +         V +NG  I  +    VF
Sbjct: 311 VGGDPERLQQVLWNLLSNAIKFTPKGGNITVKLSNVESRVQIDVIDNGKGIDPEFLPYVF 370

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            RF        RR  G+GLGL+IV   +  HGG V+ +S+
Sbjct: 371 ERFRQEDATTTRRYGGLGLGLAIVRHIVEGHGGTVAATSA 410


>gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 693

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 131/251 (52%), Gaps = 4/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           +VT+  RA   +    +    A+  K  F+ ++S+ELR+PL  IIGF++++    LG + 
Sbjct: 412 DVTERRRAVEIMRVAMQQSEMANRAKGEFLANMSHELRTPLNAIIGFSEIIAAQSLGPIG 471

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N   ++Y   I  S  +LL+++N+ILDL+ ++ G  +L   T+ +  ++    + I  + 
Sbjct: 472 NPAYAEYASDIHDSGRVLLDVINEILDLSAIETGRRELKERTVDIGRVVRGSLRLIRERA 531

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
            +  + ++   D  L    AD   L QI S +LSNA+ F+  G  +   A   ++G  + 
Sbjct: 532 LQGGVTLETALDETLPLVRADETALKQILSNLLSNAVKFTPPGGRITAGARETEDGRMLL 591

Query: 722 SVKNNGSSI-PEDMCKSVFN-RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V++ G  + PED+  ++   R V         G GLGL +V++ ++LHGG   + S+ +
Sbjct: 592 TVRDTGIGMRPEDLAHAMEPFRQVEKPLTRHAGGAGLGLPLVKALVDLHGGSFELESTPD 651

Query: 780 GVTTINCRIPS 790
             T  +  +P+
Sbjct: 652 AGTLASVWLPA 662


>gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 511

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 25/235 (10%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           ++N F+  VS+ELR+PLT+ +G  DLL + +LG+LN +  + +   + ++  L+ LVNDI
Sbjct: 272 LENEFISLVSHELRTPLTSTMGALDLLGSEQLGTLNEQGQKVLSIATTNTERLIRLVNDI 331

Query: 628 LDLATVDAGIM---KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           LDL  + +G +   K+ Y+   L     E  Q++A     + +++K+I +       AD 
Sbjct: 332 LDLERMKSGKIFTRKMKYNAADLLTTATEAMQAMA-----DQLQVKLIINPVEVELWADP 386

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKA---------ARDNGD-----FIFSVKNNGSSI 730
            RLLQ  + +LSNA+ FS  G TV + A          ++N        + ++K+ G  I
Sbjct: 387 DRLLQTLTNLLSNAIKFSEPGDTVYISATLSESQGVEPKENEPLLPKYLLITIKDQGRGI 446

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           PED  + +F RF  V  +    + G GLGL+I    I  H G + + S+  EG T
Sbjct: 447 PEDKLQIIFERFQQVDASDSRNKGGTGLGLAICRDIIQQHDGKIWVQSTLGEGST 501


>gi|226199333|ref|ZP_03794893.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|225928740|gb|EEH24767.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pakistan 9]
          Length = 769

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D      R+ +  
Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 182

Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             ++     +  + S   +S E H   W  P +GQ + +   ++P         G + + 
Sbjct: 183 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD +++  G ++L+   + L  ++N+V  ++      + I + V           D +RL
Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 510

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F     
Sbjct: 511 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 570

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 571 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|218256903|ref|ZP_03474391.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225891|gb|EEC98541.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
          Length = 529

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 159/331 (48%), Gaps = 36/331 (10%)

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PD   ++   AF  L K E         I+   A   R + +   W         +D+  
Sbjct: 208 PDDHQRVLTEAFEKLIKGE---------IKGYTAQYRRLFRDEYIWVKAFVQPYKYDENG 258

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADE--- 567
           K L+  L  L+D   E               +N+ + +RA E+   +KN  L KA E   
Sbjct: 259 KPLK-ILYYLTDITNE---------------INIREKLRAAEKERHQKNIELAKAQESNK 302

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ ++S+E+R+PL  I+GF+ +L   +   ++ +   YV+ I+ +S +LL L+NDI
Sbjct: 303 LKSMFLANMSHEIRTPLNAIVGFSSILADMQEEDMDERHF-YVDIINKNSDLLLQLINDI 361

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++AG   ++       ++  E+    A K+  +++      D       +D +RL
Sbjct: 362 LDFSKIEAGTFDIHLKKFDFKEICEEIYAVHALKI-PDHVCFSFNRDLPSVELNSDPKRL 420

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NA 746
            Q+ S  L+NA+ F+S G  + L    +      SV + G  I E+ C ++F+RFV  N 
Sbjct: 421 TQVISNFLTNAIKFTSDGE-IKLDYLLEKDKIYVSVTDTGIGISEEACNNIFDRFVKLNT 479

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           H   ++G GLGLSI +S I   GG + + S+
Sbjct: 480 H---KQGTGLGLSISKSIIEKLGGKIGVYST 507


>gi|10957449|ref|NP_051569.1| sensor histidine kinase/response regulator [Deinococcus radiodurans
           R1]
 gi|6460878|gb|AAF12582.1|AE001826_51 sensor histidine kinase/response regulator [Deinococcus radiodurans
           R1]
          Length = 577

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 125/238 (52%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK E LR+A+ +K +F+ ++S+ELR+PL +++G   +L     G LN +Q + V+ + 
Sbjct: 201 LEEKAERLREANGLKTTFLSYMSHELRTPLHSMLGLARILSGQLDGPLNPEQLKQVQLLQ 260

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL +VN +LDLA ++AG   ++ +T  + +L   ++      +  +N  + +I +
Sbjct: 261 GAAGDLLEMVNGLLDLAKMEAGKTDVDVTTFEVRELFGTLRALFLPLL--DNPAVNLIFE 318

Query: 675 GKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731
              G      D++++ Q+    ++NA+ F++ G   +      +GD + F+V++ G  + 
Sbjct: 319 DAAGFPPLTTDQRKVEQVLRNFIANALKFTAAGEVRVTAQLLPSGDRVRFTVQDTGIGLS 378

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F  F      G+  G GLGLSI   F  L GG V + S+       +  +P
Sbjct: 379 DEEQAQLFQDFSQVGRPGRPAGTGLGLSIARKFTELLGGRVGVQSAPGAGAEFSAELP 436


>gi|239625415|ref|ZP_04668446.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519645|gb|EEQ59511.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 542

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 135/239 (56%), Gaps = 6/239 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV-EYISA 615
           E+  A+ KA++++++ ++ +S++LR+PLT+I G   +L     G+L+      +   I  
Sbjct: 302 EEETAMAKAEQLRSNLLRSMSHDLRTPLTSISGNAGVL-LKDAGTLDEAHKHRIYSDIYD 360

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  L++LV ++L +  ++ G ++L+  T +L ++++E  + +  + HEN+  I V  +G
Sbjct: 361 DSMWLISLVENLLSITRMEGGAVQLHMETELLEEVIDEAMRHV-NRRHENH-SIHVTQEG 418

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D Q ++Q+ + ++ NA+ ++  GS++ +K+ +DNG+ +  V +NG  IP++  
Sbjct: 419 DYILACVDAQLIIQVITNLVDNAIKYTPDGSSITIKSYKDNGNAVIEVSDNGPGIPDESK 478

Query: 736 KSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +F  F +  H+    +RG+GLGL +  + +N H G + +  +    +     +P++E
Sbjct: 479 DRIFQMFYTTGHKSADGKRGMGLGLPLCRAILNAHKGTIEVLDNTPSGSIFRLTLPAEE 537


>gi|300778577|ref|ZP_07088435.1| sensor histidine kinase/response regulator fusion protein
           [Chryseobacterium gleum ATCC 35910]
 gi|300504087|gb|EFK35227.1| sensor histidine kinase/response regulator fusion protein
           [Chryseobacterium gleum ATCC 35910]
          Length = 1202

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 134/246 (54%), Gaps = 7/246 (2%)

Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER   + +K E L  + + K+ F+ ++S+ELR+PL +I+  + L+  +   +LN  Q +
Sbjct: 506 AERNNEIQKKVEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMTENPDENLNEDQVE 565

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               I +S + LL L+++ILDLA +++G M L Y  +++ +++ ++K        E  + 
Sbjct: 566 SARVIHSSGSSLLTLIDEILDLAKIESGKMTLEYQKVIIEEVVKDLKSLFNPVFQEKALP 625

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI-FSVKN 725
             ++ D  +   + +DR R+ Q+   +LSNA+ F++KGS  + ++   +  DFI FSVK+
Sbjct: 626 FNIVIDEDVQKVIESDRLRIDQVLRNLLSNALKFTTKGSIDLHIRKHTEKPDFIIFSVKD 685

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I ED  K +F  F       +R+  G GLGLSI      L GG + + S  +  + 
Sbjct: 686 TGVGIAEDKQKIIFEAFQQADGSTKRKFGGTGLGLSISREIARLLGGELVLKSEVDKGSE 745

Query: 784 INCRIP 789
            +  IP
Sbjct: 746 FSFIIP 751


>gi|220907213|ref|YP_002482524.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863824|gb|ACL44163.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1965

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 142/284 (50%), Gaps = 14/284 (4%)

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-----LTEKNEALRKADEI 568
            L GTL   S +  +++    P    +L  ++   ++  ERA     L ++ E L +A+ +
Sbjct: 1536 LLGTLSFASLTRTQFT----PAEVNLLQAISEQVAIALERAELVASLEQQTEDLARANRV 1591

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+  +S+ELRSPL  I+G+T LL++        K ++ +  I  ++ +   L+ D+L
Sbjct: 1592 KDEFLAVLSHELRSPLNPILGWTKLLQSQSFSP--DKAAKALATIERNAKLQAQLIEDLL 1649

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            D++ +  G M LN +++ L  ++    +++        I+++ + + ++   + D  RL 
Sbjct: 1650 DVSRILQGKMVLNVTSVNLGSVIEAALETVRLAAEAKAIQLETLMEPEIDPILGDPARLQ 1709

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            QI   +L+NA+ F+ +G  V ++  R +      V++ G  I       VF+ F      
Sbjct: 1710 QIVWNLLTNAVKFTPQGGQVTVRLQRVDTFAQLQVQDTGKGISPAFLPHVFDYFRQEDGT 1769

Query: 749  GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
              R+  G+GLGL+IV      HGG V+  S  EG+  T   R+P
Sbjct: 1770 TTRKFGGLGLGLAIVRHLTEQHGGTVAADSPGEGLGATFTIRLP 1813


>gi|332702022|ref|ZP_08422110.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 946

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 18/249 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +T   R E  L    +A  +A+  K+ F+ ++S+E+R+P+  I+G  +L   + +G  +
Sbjct: 538 EITSLRRLEEDLRRARDAAEEANRAKSQFLANMSHEIRTPMNGIMGMVEL---ALMGCKD 594

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++  +Y+ Y   S+  LL++VNDILDL+ ++AG M+L  S     ++L  +     ++  
Sbjct: 595 ARSREYLGYAKNSAVNLLDIVNDILDLSKIEAGRMELEKSVFRPREMLESLFAIQGSQAE 654

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARDN 716
           +  +R K   D  +    V D  RL QI + ++ NA+ ++ +G         +LK  ++ 
Sbjct: 655 QKGLRFKTHVDPNVPKRLVGDEGRLRQILTNLVGNAVKYTREGEVAVFVTAEVLKQDQEQ 714

Query: 717 GD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
           G+         +FS+++ G  I  D    +F  F   A   +  G GLGL+I +  + L 
Sbjct: 715 GEHRRADLVSLVFSIRDTGIGIAPDKLPRIFEPFTRGAQDAEFGGTGLGLTITKQLVELM 774

Query: 769 GGHVSISSS 777
            G + + S+
Sbjct: 775 NGRIDVRST 783


>gi|114570424|ref|YP_757104.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114340886|gb|ABI66166.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 575

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 13/256 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T  V+A   L  K+E   +A  +K+ F+  VS+E+R+PL  ++G   +L     GSL   
Sbjct: 181 TQMVQAAIELQRKSEQAEEATRVKSEFLATVSHEIRTPLNGVLGMARVLDD---GSLRPD 237

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           QS  V+ I+ S  +LL+ +ND+LDL+ ++ G+M +      L  ++N V Q       E 
Sbjct: 238 QSDQVQAITRSGEVLLSTLNDVLDLSRIEEGLMVVETRPFDLPAMINGVAQLYVITAAEK 297

Query: 666 NIR--IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF 721
           ++   I++  D  L    V D  R+ QI   +LSNA+ F+++G   +++       D  F
Sbjct: 298 SVEFFIEISPDLDLTQKRVGDENRITQILHNLLSNAIKFTAEGRVDLVVSPGETPSDIRF 357

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V++ G  + E   + VF RF        R+  G GLGL I      L GG + +  S+ 
Sbjct: 358 TVRDTGIGMSEAEVRRVFERFTQADQSTSRKYGGSGLGLCIASQLATLMGGRIDV-QSEP 416

Query: 780 GVT---TINCRIPSKE 792
           GV    T + ++P+ +
Sbjct: 417 GVGSCFTASLKLPAHD 432


>gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 1155

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 132/245 (53%), Gaps = 3/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q ++
Sbjct: 468 QAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQVKF 527

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I ++   LLNL+NDILD+A V+AG +++   T  +  L+  ++           +  
Sbjct: 528 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAF 587

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +V  + ++  +   DRQRL QI   +LSNA+ F+ +G   +  + + +   +F+V++ G 
Sbjct: 588 EVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERGQVSMNVSFQADSGIVFAVRDTGI 647

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D  +++F  F        RR  G GLGLSI     +L GG +++ SS    +  + 
Sbjct: 648 GIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFSL 707

Query: 787 RIPSK 791
            +P +
Sbjct: 708 ILPER 712


>gi|67639970|ref|ZP_00438795.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei GB8 horse 4]
 gi|238520599|gb|EEP84057.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei GB8 horse 4]
          Length = 757

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 213/514 (41%), Gaps = 81/514 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANK 364
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D    +  R A  
Sbjct: 113 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARV 172

Query: 365 LPEQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIW 414
               L      E++    +S+  E H   W  P +GQ + +   ++P         G + 
Sbjct: 173 RASAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVL 223

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--- 471
           +  +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E   
Sbjct: 224 IVRDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAA 279

Query: 472 ---------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FD 508
                          N   P +       I N+   C R     DG  + A +  S  FD
Sbjct: 280 RGCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFD 335

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD-- 566
           +             D+ +  S+      +       V  S+R  R      +A R+AD  
Sbjct: 336 ER------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTS 377

Query: 567 -EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V 
Sbjct: 378 NRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVG 434

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILD +++  G ++L+   + L  ++N+V  ++      + I + V           D +
Sbjct: 435 DILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGE 494

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F   
Sbjct: 495 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGHGISPEFLPHVFEAFRRA 554

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 555 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 588


>gi|218130913|ref|ZP_03459717.1| hypothetical protein BACEGG_02508 [Bacteroides eggerthii DSM 20697]
 gi|217987257|gb|EEC53588.1| hypothetical protein BACEGG_02508 [Bacteroides eggerthii DSM 20697]
          Length = 294

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 138/256 (53%), Gaps = 10/256 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F++++ S   + AL   NE   ++ +++N+F+ ++++E+R+PL  I+GFT +L  ++
Sbjct: 37  IMIFISISKSKHVQ-ALKRMNEVAEESRQLQNAFIANMTHEIRTPLNVIVGFTTIL--AE 93

Query: 599 LGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             +L+ +Q   +++ I+ +  +LL LVND+LD + ++A  M+ N   + +N L+ E    
Sbjct: 94  TDNLDKEQRVAFLKEINENKDVLLQLVNDLLDYSKIEANTMEYNDGEVDVNALILET--C 151

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           IA   H     I+ + +          DR R  Q+   ++ NA+ F+ +G   +      
Sbjct: 152 IAENAHSRLPGIQAEFVEKLPQCRLRIDRVRFGQVVGNLIRNALKFTEQGCVKVGCRRLS 211

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           N +F F V + G  I E+  +++F RFV   +    RG GLGLSI +S I  +GG + + 
Sbjct: 212 NQNFYFYVADTGCGIEEESRRAIFERFVKMNY--NIRGTGLGLSICKSIIEHYGGGIGVE 269

Query: 776 SSDEGVTTINCRIPSK 791
           S     +T    +P+K
Sbjct: 270 SKKGEGSTFYFTLPAK 285


>gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
 gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
          Length = 574

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 151/335 (45%), Gaps = 42/335 (12%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           W+T      P   +  +A   +R  N    +DL A + T  +DE   L  +L  L + V 
Sbjct: 265 WRTSRAIAEPVIIVTQVAEQVARKSN----FDLRAPVTT--EDEIGLLAKSLNRLIERVS 318

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E +                       + L +  E    A + K+ F+ +VS+ELR+PL  
Sbjct: 319 ERT-----------------------KELEQAKELAEAASKAKSVFLANVSHELRTPLNA 355

Query: 587 IIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +IG + LL+       L       +E I+++   LL L+NDILDL+ ++AG M L   T 
Sbjct: 356 VIGLSQLLQDDATDLDLTGDFITDLETINSAGRHLLELINDILDLSKIEAGKMTLYPETF 415

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+N V  ++ + + +NN  ++V  D +LG+  AD+ R+ Q+   +LSN+  F++ G
Sbjct: 416 EIAKLINNVVLTVKSAIDKNNNILEVYCDQQLGTMYADQTRMRQVLLNLLSNSAKFTTNG 475

Query: 706 STVILKAARDNGDF---------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
             V L   R+  D           FSV + G  + E   + +F  F        +R  G 
Sbjct: 476 K-VTLTVKREKTDLPPEAAFDMITFSVTDTGIGMSESQQQQLFKPFTQGDTSTTKRYGGT 534

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I   F  + GG V + S     +T    +P
Sbjct: 535 GLGLAISRHFCQMMGGEVFVKSQPGVGSTFTVHLP 569


>gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 995

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 11/255 (4%)

Query: 530 IIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I L     +LT  V++TD V AE AL E  +A   A   K+ F+ ++S+E+R+P+  ++
Sbjct: 579 LIRLQQRDLLLTVMVDITDRVNAEHALLEAKQAAESASRAKSEFLANMSHEIRTPMNGVL 638

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +LL  +    L ++Q QY+  I +S   LL L+NDILDL+ ++AG ++L Y+   L 
Sbjct: 639 GMAELLAFT---DLTAEQEQYLACIKSSGDNLLALINDILDLSKIEAGKIELEYADFSLR 695

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
             +N+V  +  + +H   ++        L   V  D+ R  QI   +LSNA+ F+  GS 
Sbjct: 696 KAINDVVTTQISAIHTKRLQFSCDLAEDLPEIVLGDQLRFKQILLNLLSNAIKFTDHGSV 755

Query: 708 VI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            I   L        F+  +V + G  I  +  +++F  F        RR  G GLGL+I 
Sbjct: 756 SISAELIECHSFQSFVRVTVADTGIGIQAEARQTIFAPFTQADSSTTRRFGGTGLGLAIS 815

Query: 762 ESFINLHGGHVSISS 776
                L GG + + S
Sbjct: 816 RQLAELMGGDIGLES 830


>gi|91792026|ref|YP_561677.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91714028|gb|ABE53954.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
          Length = 853

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 149/287 (51%), Gaps = 12/287 (4%)

Query: 501 AAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           A  I   DDE   L  +L  +L++   + SII L ++ T      +    + E+ L    
Sbjct: 212 ARAIKRSDDEIGQLADSLNAMLTELSKQESIISLNHSLT----AEIAVRKQTEQELINMR 267

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           ++  +A+  K+ F+ ++S+E+R+P+  IIGF D++     G L+ KQS+++  +  S+  
Sbjct: 268 DSAEQANRSKSDFLANMSHEIRTPMNAIIGFVDIVLE---GDLDQKQSKHLMTVRNSAKD 324

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-IRIKVISDGKLG 678
           L NL+NDILD+A ++AG ++L  +   +  LL +V ++   K  +   + I+ I++    
Sbjct: 325 LHNLLNDILDVAKLEAGKVELESAPFSVKKLLGQVIKTFELKAKDKGLVFIQRIAEDLPA 384

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F+ D  RL Q+   ++ NA+ F++ GS  I     +     F +++ G  I +D  + +
Sbjct: 385 QFLGDALRLKQVLMNLIGNAIKFTASGSITIAVEQINQEQLQFIIRDTGIGIAKDKLEHI 444

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLG +I +  + L GG + +  SDEGV T
Sbjct: 445 FESFTQADTSTSRKYGGTGLGTTISKRLVELMGGKIWL-ESDEGVGT 490


>gi|86157906|ref|YP_464691.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774417|gb|ABC81254.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 418

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +V  ER  TE+   L + D +K++F+ ++++EL +PLT + G+  +L++ KLG L  +Q 
Sbjct: 147 AVAGERRATER---LLEVDRLKSAFMHNLAHELSTPLTPLAGYLRILQSDKLGPLQPQQR 203

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + VE +  S   L  +V+++ D A++ AG   +  + +V + L +EV       + +  +
Sbjct: 204 RIVESMLGSVARLSRIVDNLSDFASLQAGRAPIVEAPVVPDQLADEVVAEHRPAIRDARL 263

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V   G  G+ +AD ++L Q  S ++SNA+ FS  G+ V+++  R+ G   F+V + G
Sbjct: 264 HVAVSHAGG-GAVLADARKLRQALSNLVSNAVKFSPHGAEVLVEVGREPGRLRFTVYDQG 322

Query: 728 SSIPEDMCKSVFNRFVSNAHR----GQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I     + VF      A R     +  G GLGL +       HGG V + S 
Sbjct: 323 PGIGAAELERVFEPLHHAAARAGEDARLPGSGLGLPVARRIAEAHGGRVWVESP 376


>gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 1313

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 132/249 (53%), Gaps = 14/249 (5%)

Query: 540  LTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            ++FV ++++  RAE+AL E  E    A++ K++F+  +S+ELR+PL  I+G+T +    K
Sbjct: 808  ISFVQDISERKRAEKALLEAKEVAESANQAKSTFLASMSHELRTPLNGILGYTQIFNHDK 867

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              SL  KQ + ++ I  S   LL L+NDILDL+ +++G ++L  +    ++ L ++    
Sbjct: 868  --SLTEKQQEGIQIIQRSGEHLLTLINDILDLSKIESGKLELMPTDFRFSNFLKDIADLF 925

Query: 659  ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--------STVI 709
              +  + N+        +L + V AD +RL Q+   +LSNA+ F+ +G         +V 
Sbjct: 926  RMRAEQKNVEFIYEPLSQLPTAVYADEKRLRQVLLNLLSNAVKFTQEGQVSFKVIYQSVP 985

Query: 710  LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINL 767
              +  +N + I F V++ G  I  D  + +F  F     + ++  G GLGL I +  + +
Sbjct: 986  APSTEENKNTIRFEVEDAGQGIAPDDLERIFLPFQQVGDQSEQVEGTGLGLPISKKLVEM 1045

Query: 768  HGGHVSISS 776
              G + + S
Sbjct: 1046 MAGQLQMQS 1054


>gi|329955945|ref|ZP_08296748.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525325|gb|EGF52375.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 867

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 129/223 (57%), Gaps = 6/223 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYI 613
           +  ++ AL +AD++K++F+ ++S+E+R+PL  I+GF+DLLK   L + +S++  Q+VE I
Sbjct: 633 IAARDRAL-QADKLKSAFLANMSHEIRTPLNAIVGFSDLLK--DLEAFSSEEVQQFVETI 689

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + + T+LL L+NDILDL+ +++G M    S+  L  ++ +V  S    M +         
Sbjct: 690 NINCTLLLALINDILDLSRIESGTMDFQLSSYNLTFIMQQVYDSQRLSMPQGVELRTDFP 749

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +G     V D  RL Q+ + +++NA  F++KGS  +  +  + G     V++ G+ I ++
Sbjct: 750 EGTGKDIVTDSVRLKQVVNNLINNARKFTAKGSITLGYSMEEPGYTTVFVEDTGAGISDE 809

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             K +F RF       Q  G GLGLSI ++ +    G ++++S
Sbjct: 810 DQKHIFERFYKADSFTQ--GAGLGLSICQTIVERLHGTITVTS 850


>gi|302528985|ref|ZP_07281327.1| two-component system sensor kinase [Streptomyces sp. AA4]
 gi|302437880|gb|EFL09696.1| two-component system sensor kinase [Streptomyces sp. AA4]
          Length = 1586

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 19/257 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L E+   L  A + KN F+ ++S+ELR+PL + +    LL  +  G+L  KQ Q+
Sbjct: 1151 QARQELEERAGQLTVASQYKNEFMANMSHELRTPLNSALILAKLLSENPEGNLTEKQIQF 1210

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I A+ + L  L+NDILDLA V+AG + L  S + L +L+N V+        +  +  
Sbjct: 1211 AKTIYAAGSDLQQLINDILDLAKVEAGKLDLQMSDVTLPELVNYVESLCRPLTADKGLEF 1270

Query: 670  KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--------------LKAAR 714
             V+ D  + GS   D  RL Q+   +LSNA  F+ +G   +              L++A 
Sbjct: 1271 AVLIDPPVPGSVHTDEHRLQQVLRNLLSNAAKFTDEGGVRLHIRMADPEEVEQESLRSA- 1329

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
              G   F+V++ G  IPE+  + +F+ F        R+  G GLGLSI +    L  G +
Sbjct: 1330 -AGIIAFAVEDTGIGIPEEKLEVIFDAFRQADGTTSRKYGGTGLGLSISQQLTELLSGEL 1388

Query: 773  SISSSDEGVTTINCRIP 789
             +SS     +T    +P
Sbjct: 1389 RVSSVPGKGSTFTLYLP 1405


>gi|206889477|ref|YP_002248008.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741415|gb|ACI20472.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 392

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 182/359 (50%), Gaps = 38/359 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEE---NRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++EG+ +  P G I L+N +F+ + K +E    RL     IRNI           D  +L
Sbjct: 57  ITEGLLIIDPKGYIMLANQSFKDILKIDEPPEGRLVIEV-IRNI-----------DLINL 104

Query: 500 FAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            ++ I+  +D  E  +L+   +   D  L    +P+ +++  ++F+ +         L  
Sbjct: 105 ISSSISKKEDLAEEITLKKAGK---DIYLLAKAMPVVDSEGTISFLII---------LLH 152

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISA 615
               L++ + ++  FV +VS+EL++P+T I G+ + L     G++N K++  +++E I  
Sbjct: 153 DITRLKQLENVRRDFVANVSHELKTPVTAIKGYAETLLD---GAINDKENSKKFIEIIKN 209

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  LV D+L L+ ++ G +K+    IVL++L++ V Q +  K  +  + ++     
Sbjct: 210 QADRLNALVEDLLTLSRIEFGDIKIEKENIVLDELISSVFQILKDKAQKKGVLLQKEIPP 269

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +   + AD+ R+ QI   ++ NA+ F+ KG  V ++  ++N   + SV++ G  IP++  
Sbjct: 270 ETAIY-ADQYRMSQIMINLVDNAIKFTEKG-FVKVRFFKENSKGVISVEDTGIGIPKEHI 327

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +  RF  V  A   Q  G GLGL+IV+  +  HG  + I S  E  T +   IP KE
Sbjct: 328 HRIGERFYRVDKARSRQLGGTGLGLAIVKHLVLAHGWQLQIESEVEKGTKVKIVIPEKE 386


>gi|163757825|ref|ZP_02164914.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285327|gb|EDQ35609.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 788

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 9/238 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NVT + +AE  L E  E    A   K  F+  VS+E+R+PL  I+G T LL  ++     
Sbjct: 245 NVTATRKAEAELVEALERAEAASHAKTRFLATVSHEIRTPLNGILGMTHLLSQTET---T 301

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y+     S   LL+L+ D+LD+ +++AG + L      L++L++ V + +A+K H
Sbjct: 302 PEQASYIRNARESGQSLLSLIEDLLDVTSIEAGRLNLREEEGDLSELVHGVCELMASKAH 361

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           E NI I V I+        +D  R+ QI   ++ NA+ F+  G  V+++ + +N   +FS
Sbjct: 362 EKNIEIAVHIAVDAPQRIASDIGRVRQILFNLVGNAIKFTESGG-VLVEVSLENAALVFS 420

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
           V + G  + E     +F  F   A  G  R   G GLGLSI    +   GG + + S+
Sbjct: 421 VTDTGPGLKETDKAKIFEEF-ERADNGPTRKHGGAGLGLSISARIVEALGGEIGVDST 477


>gi|307151157|ref|YP_003886541.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981385|gb|ADN13266.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 634

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 133/262 (50%), Gaps = 11/262 (4%)

Query: 528 YSII--PLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           Y+II  P+ N   +LT      V++T+  + E+      E  ++A+ IK+ F+  +S+EL
Sbjct: 221 YNIIIDPILNQHRVLTGAVFIIVDITERKQIEKEREILYEESQRANRIKDEFLAILSHEL 280

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           RSPL  I+G+  LLKTSK  +   K    +E I  ++ +   L+ D+LD++ +  G + L
Sbjct: 281 RSPLNPILGWASLLKTSKFNADTIKHG--LEIIERNANLQTRLIEDLLDVSRILRGKLIL 338

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N   + L  ++    + +       +I I+   D  +G+  AD  RL Q+   +LSNA+ 
Sbjct: 339 NTYPVELPSIIASALEIVQLSAKAKSIEIETKIDANVGAVQADPSRLQQVIWNLLSNAIK 398

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F+  G  V +   R +     ++ + G  I ++    VF+ F        R+  G+GLGL
Sbjct: 399 FTPSGGKVTIYLERIDKYAQITISDTGKGISKEFLPYVFDYFRQADSTTTRKFGGLGLGL 458

Query: 759 SIVESFINLHGGHVSISSSDEG 780
           +IV   + LHGG V   S+ EG
Sbjct: 459 AIVHHLVELHGGTVQAQSAGEG 480


>gi|237509427|ref|ZP_04522142.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei MSHR346]
 gi|235001632|gb|EEP51056.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei MSHR346]
          Length = 771

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 213/512 (41%), Gaps = 77/512 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D      R+ +  
Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGR 182

Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             ++     +  + S   +S E H   W  P +GQ + +   ++P         G + + 
Sbjct: 183 GARVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 239

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 240 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 295

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 296 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 351

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 352 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 393

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 394 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 450

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD +++  G ++L+   + L  ++N+V  ++      + I + V           D +RL
Sbjct: 451 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 510

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F     
Sbjct: 511 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 570

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 571 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040090|gb|ACT56886.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 174/357 (48%), Gaps = 20/357 (5%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHI--RNIAATCSRYYNESDGWDL 499
           S+G+A+   +G I  +N A   L  +  E+    P T    +N  +  + Y  E    DL
Sbjct: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521

Query: 500 FAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALT 556
              +      E+ +L  T E  LLS  ++   I  LP +    LT  ++++  + +  L+
Sbjct: 522 RQTL------EKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLS 572

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615
              +   K    K+ F+  VS+E+R+PLT IIGF++++K  + G L N +  +Y  YI  
Sbjct: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S  ++L++VND+LD++ +++G M L++  + L++ ++E    +    +E  I I+     
Sbjct: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDM 734
            +   +AD + + QI   ILSNA+ F+  G  +I+      N + I  V++ G  +    
Sbjct: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +     F  + N+ + +  G GLGL + ++ ++ + G   I S+    T I    P
Sbjct: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809


>gi|332142243|ref|YP_004427981.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552265|gb|AEA98983.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 884

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 132/246 (53%), Gaps = 32/246 (13%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEY 612
           + L K D  +N F+  +++ELR+PL  I+    +L+T        ++ ++ ++Q++Y+  
Sbjct: 519 QELEKQDNYRNEFLATLAHELRNPLGPIMSGASILETVDDDKTRKRVTAIINRQAEYMS- 577

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE----VKQSIATKMHENNIR 668
                     L+ND++D++ +  G +KL +  + + D+L++    V+Q +  K H  +I 
Sbjct: 578 ---------KLINDLMDVSRITRGKVKLEFERLSIQDVLSDSLEIVEQQVKAKKH--DIT 626

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +  + +    +   D+ RL QIFS I+ NA  ++ +   +++   +D    + SVK+NG 
Sbjct: 627 VNCLDEDV--TVYGDKARLSQIFSNIIHNATKYTKESGKIVVDIRKDGVMIVVSVKDNGM 684

Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV---TT 783
            IPED  K VFN F    AH    + G+G+GL++V   + LH G VS+ S  EGV   +T
Sbjct: 685 GIPEDRLKDVFNMFTQIEAHSTHTKGGLGIGLTLVSKLVALHHGEVSVMS--EGVGQGST 742

Query: 784 INCRIP 789
              R+P
Sbjct: 743 FEVRLP 748


>gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 584

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 172/358 (48%), Gaps = 37/358 (10%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWD 498
           ++ + EGV V   D  + L N AF S++ T  E +  P   I       +R+       D
Sbjct: 253 LNGMGEGVMVTDRDAVVTLVNHAFCSMFATGAEVQGRPLLEI-------TRHP------D 299

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERAL 555
           L+AA                E LS     +  I L   +T+L     ++  D ++   A+
Sbjct: 300 LYAA--------------CREALSARQERHQEIALAGGKTVLVHWVPLSEGDGLQGAVAV 345

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                A ++ ++I+  FV +VS+ELR+P+T I G+ + L +  L +   +  +++  I  
Sbjct: 346 FHDISAFKRVEKIRRDFVANVSHELRTPVTVIKGYAETLLSGALAADPQRAERFLLIIQN 405

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  LV D+L L+ +++G M +    + L++ + +    +  +  E  ++++  + G
Sbjct: 406 HADRLSGLVRDLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPA-G 464

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
           + G  V ADR RL Q+   +L NA+ +S  G +V ++ AR+ GD +  SV+++G  IPE 
Sbjct: 465 EAGLTVQADRGRLEQVLINLLDNAIKYSETGKSVGVETARE-GDLVRVSVRDSGIGIPEK 523

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RF  V  A      G GLGLSIV+  +  HGG + + S     +  +  +P
Sbjct: 524 DLPRLFERFYRVDEARSRDNGGTGLGLSIVKHIVQAHGGTLDVKSEQGKGSVFSFTLP 581


>gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 863

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 139/256 (54%), Gaps = 13/256 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++++D V++++ L E      KA ++K  F+ ++S+E+R+PL  ++GF++LL+T+   +L
Sbjct: 333 IDISDRVQSQQRLQEARIMAEKAAKLKEDFLANMSHEIRTPLNAMLGFSELLETT---NL 389

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++ Q +++  I  +   LL +VNDILD++ ++AG+++L      +  L   +K       
Sbjct: 390 DADQQEFLRLIRTAGKNLLTIVNDILDISKIEAGMIQLESIPFSIQMLTASIKAMCQGAA 449

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDF 719
            +  +++ V  D  L + F+ D  RL QI   +++NA+ F+ +GS  +L  +  R     
Sbjct: 450 TDKGLQLIVEVDPNLPTVFMGDPTRLTQILLNLINNAIKFTKQGSVTLLIEQGERKTSAS 509

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           I   F V++ G  +  +   ++F RF   A +   R   G GLGL+IV+S   L  G VS
Sbjct: 510 IPVRFIVQDTGIGMAREALPTIFERF-QQADKFTTRYYGGTGLGLNIVKSLTELQKGSVS 568

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    +     IP
Sbjct: 569 VESTLGKGSRFTVEIP 584


>gi|316934854|ref|YP_004109836.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315602568|gb|ADU45103.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 530

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---I 613
           E       A+  K+ F+  +S+ELR+PL  I+GF++++K+   G+       Y +Y   I
Sbjct: 252 EARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPAYKDYSADI 309

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LLNL+N+ILDL+ ++AG  +LN   I L  ++++    +  +     I I  + 
Sbjct: 310 HNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVSDCHHLLKLRATSRGITIHEVF 369

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPE 732
           +  +     D + + Q+   +LSNA+ F+ +G  + LKA    +G    SVK+ GS IPE
Sbjct: 370 EQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPE 429

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +    V   F   SN+ +   +G GLGL I +S I++HGG  ++ S
Sbjct: 430 EEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 475


>gi|297205480|ref|ZP_06922876.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
 gi|297150058|gb|EFH30355.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
          Length = 387

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ K+  + +VS+++R+PLT+IIG+  LLK     SL + Q +YV+     +  +  
Sbjct: 148 RQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKAD--NSLTADQLKYVDIAYNKAGQMKA 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ D  T+++   K+N + + L  +L +V      +  E NI + V +        A
Sbjct: 206 LANDLFDYTTLNSTKTKVNMAPLHLTSMLEQVAAGFELEAEEKNISLNVNTKPDDLVIDA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++F+ +++NA+ +    S + L A +   + +   V+N+G +IP++  + +F R
Sbjct: 266 DAEKLVRVFNNLIANALKYGHGASFINLSAKKIKANLVEIRVENDGEAIPKEALQKIFER 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  V  +   +  G GLGL+IV+  I+LH G ++  S+D+ +T+    +P K
Sbjct: 326 FYRVETSRNTKTGGTGLGLAIVKEVIDLHHGKITCESNDQ-LTSFIIHLPFK 376


>gi|120602021|ref|YP_966421.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562250|gb|ABM27994.1| Cache sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 733

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E    A+  K++F+ ++S+E+R+PL  ++G  DLL+ +    L++ Q++Y+    
Sbjct: 339 LREAKEKADNANAAKSAFLANMSHEIRTPLNGLLGMLDLLEAT---GLDAGQAEYLGMAR 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L +L+ DILDL+ ++AG + L      L+D+L  ++++ A    E  + ++   D
Sbjct: 396 RSGRRLTDLLGDILDLSRIEAGKLVLAEQPFTLSDVLASIRETFAPLSREKGLPLEFALD 455

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSS 729
              G F+ D  R+ QI   ++ NAM F+++G        +L         +F V ++G  
Sbjct: 456 AVPGPFLGDAVRVRQILLNLVGNAMKFTNRGQVKLEVKTLLPMPDGRARILFMVHDSGCG 515

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPE+   S+   F  V      + +GVGLGL+I  + ++ + G +++ S
Sbjct: 516 IPEEQVGSICEPFTQVEAPLTKRYQGVGLGLAITRTLVHAYDGTLTVDS 564


>gi|330505536|ref|YP_004382405.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
 gi|328919822|gb|AEB60653.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
          Length = 1277

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R +TE+    ++ +++KN FV  VS+ELR+PLT I G   L+    LG +     Q +  
Sbjct: 1038 RDITER----KRIEQMKNEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQTMRQMLAI 1093

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIK 670
              ++S  L  L+ND+LD+  + AG M+ +    ++  LL +  +      + H+  +R++
Sbjct: 1094 AHSNSLRLSALINDLLDMEKLVAGKMQFDLQARLMQPLLEQALLHNQPYAEQHQVELRLQ 1153

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            V  D  +     D QRL Q+ + +LSNA  FS  G  V++           SV +NG  I
Sbjct: 1154 VEDDALVN---VDTQRLAQVMANLLSNAAKFSPPGGNVVVCLQTLGEALRVSVSDNGPGI 1210

Query: 731  PEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            PE     +F++F S A  G   Q+ G GLGL+I +  I   GG +   SS     T    
Sbjct: 1211 PEAFKPRIFSKF-SQADSGDTRQQGGTGLGLAICKEIIERMGGQIGFDSSPGQGATFWFE 1269

Query: 788  IP 789
            +P
Sbjct: 1270 LP 1271


>gi|83954248|ref|ZP_00962968.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal
           [Sulfitobacter sp. NAS-14.1]
 gi|83841285|gb|EAP80455.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal
           [Sulfitobacter sp. NAS-14.1]
          Length = 669

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 171/382 (44%), Gaps = 38/382 (9%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-CSRYYNESD 495
            E ID + EG   F    R+ + N  +R       + + PG  +  +     +R  + S 
Sbjct: 286 AEAIDAIDEGFIAFDDKERVMVVNQKYRDYHPQIADLIVPGVTMGELVVNWANRTESLSG 345

Query: 496 GWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                A +       R   Q  L+ + +D+ L+ +    P+  T+  + +VT   RA+  
Sbjct: 346 SKSKQAWVRERLQRFRNPGQAFLQDIGNDNWLKVTEAKTPHGYTVGIWTDVTAEKRAQ-- 403

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK--------LGSLNSKQ 606
                EA   AD  K  F+ +VS+ELR+PLT I G +  ++ S         + +L +  
Sbjct: 404 -----EAAEAADREKTEFLNNVSHELRTPLTVIFGRSSFMRHSDKMPQAQRLMSALTADG 458

Query: 607 S-------QYVEY----------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           S         +EY          I+ SS  ++ LV D+LD   V  G ++L+ +   L++
Sbjct: 459 SGCPKSAAAAIEYQKFITDQGAGIAESSQHMIRLVEDLLDWTKVSRGQLELDMAPTQLDE 518

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +   V Q +        + +    DG   + VAD+ R+ QI   +++NA+ F+S+G  + 
Sbjct: 519 IARTVTQELQPAAEAKGLTLTYAGDGPAAT-VADKVRVKQILYNLITNAIKFTSEGK-IH 576

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           L       + +FSV + G+ I E+    VF RF  V  +   Q  G+GLGL+I E    L
Sbjct: 577 LSMLHSTDEIVFSVTDTGNGIAEEDASRVFQRFQQVDGSMTRQNGGLGLGLAISEQLAEL 636

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +S+ S     +T +  +P
Sbjct: 637 HGGSLSLESKLGVGSTFSLTLP 658


>gi|163797314|ref|ZP_02191267.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159177405|gb|EDP61961.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 485

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+  +S+ELR+PL  I+GF++      LG + S+   Y   I  S++ LL ++NDIL
Sbjct: 239 KSTFLATMSHELRTPLNAIMGFSEAQAKQLLGPVPSRYRDYANDIHTSASHLLAVLNDIL 298

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+A +DA  + L       +  ++   + I        I + + +     +  AD + L 
Sbjct: 299 DMARMDARRLTLYEEEFNPSKAVDMAVRMIDPDRKRAGIVLSIENRAMGSTLRADERLLR 358

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           QI   +LSNA+ F+S G TV +   +       SV++ G+ I  D+ K V   F      
Sbjct: 359 QIVLNLLSNAVKFTSPGGTVTVALDQSASGLTLSVRDTGTGISPDLLKRVAEPFFQADQS 418

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             RR  G GLGLS+V+ F  LHGG ++I S+    T +  R P+
Sbjct: 419 YARRHQGTGLGLSLVKGFAELHGGSIAIESTLGEGTMVAVRFPA 462


>gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 7894]
          Length = 927

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 532

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ QI S ++ NA+ F+ +G   I     KAA
Sbjct: 533 APLAESKGLALLSSIGEGVARHYAGDPTRIRQILSNLIGNAIKFTERGHISIDVHRAKAA 592

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673


>gi|254429345|ref|ZP_05043052.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195514|gb|EDX90473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 771

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 13/229 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL KA  IK+ F+ ++S+E+R+PL  I+GFT LL  S +     +Q  Y+  I  S+
Sbjct: 275 RKEAL-KASHIKSEFLANMSHEIRTPLNGILGFTKLLDRSPM---TPRQEDYLSTIHKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDG 675
             LL ++ND+LD + ++AG + L+++ + L+DL+ +V+  +A    E  +    I  SD 
Sbjct: 331 ESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQAAIIYSDV 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIP 731
            + + + D  R+ Q+ + ++SNA+ F+ +GS V+   L+  R     I  +V + G  + 
Sbjct: 391 PV-ALLGDPLRIRQVLTNLVSNAIKFTDQGSVVVRAMLEEDRGAEAIIKITVTDTGPGLN 449

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +  K +F+ F     + R Q  G GLGL+I +  +   GG + I S +
Sbjct: 450 PEAQKDLFSAFTQADQSARRQEGGTGLGLAISKRLVEGMGGEIGIDSRE 498


>gi|304391854|ref|ZP_07373796.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130]
 gi|303296083|gb|EFL90441.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130]
          Length = 526

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+  +S+ELR+PL  I+GF++++    +G + N    +Y+  I  S   LL L+N+I
Sbjct: 270 KSRFLATMSHELRTPLNAILGFSEIMSNEVMGPIDNDNYKEYLADIHRSGAHLLKLINEI 329

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ ++AG  +LN   + L   + E +Q +  K ++  +++ +     + +  AD + +
Sbjct: 330 LDLSRIEAGRYELNEEPVKLGHAVEESQQMVKLKANQKKVQLVIQLQPDMPAVWADARAV 389

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRF--VS 744
            QI   +LSNA+ F+  G T+ LK    +G   + ++++ G  IPE+    V + F   S
Sbjct: 390 RQIVLNLLSNALKFTPSGGTIWLKCGWTSGGGQYITIRDTGPGIPEEEIPIVLSSFGQGS 449

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A +   +G GLGL IV++ + +H G   + S     T +    P
Sbjct: 450 IAIKSAEQGTGLGLPIVQALMQMHDGRFDLRSKLRAGTEVTATFP 494


>gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 995

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 175/373 (46%), Gaps = 26/373 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E+  +Q + E K       Q   ID L  G+AV   + +I+L N  F  L++ +    
Sbjct: 119 IMEDDILQKEQERKLMNSYAFQRSLIDRLHSGIAVTDCNKKIRLLNRKFYELFQLKGE-- 176

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITS--FDDERKSLQGTLELLSDS--VLEYSI 530
                       C      SD   LF   I    F++  K  + T E+  D+   L Y+ 
Sbjct: 177 ----------VDCHIGMQASDLHYLFDKEINKNKFENTEKRTRTTKEIKIDTGRTLRYNC 226

Query: 531 IPLPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            PL      +     F ++T+  + ER + +  E   K +  K+SF+  +S+ELR+PL  
Sbjct: 227 FPLNEENDFVGYLWEFEDITEQKKMERVIIQAKEEAEKVNMAKSSFLSKMSHELRTPLNG 286

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF  LL+  +  SLN +Q  + + I +  + LL+L+NDILD++ ++ G +K++   + 
Sbjct: 287 ILGFAQLLEMDE--SLNEQQRDFAQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVH 344

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK- 704
           L  ++ E    +     + NI I    D      V AD  RL QI   +L NA+ ++ + 
Sbjct: 345 LLTVIKECINIVQPLAKKKNISIYSQLDQWEDMIVLADPIRLKQILLNLLDNAIKYNQEN 404

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G  ++    ++N  +I  V + G     +    VF  F       +  G G+GLS+V+  
Sbjct: 405 GKVIVFCRLQENKQYIHIV-DTGVGFSVEEYTKVFVPFY-RIESTKEEGTGIGLSLVKQL 462

Query: 765 INLHGGHVSISSS 777
           ++L GG ++++S+
Sbjct: 463 VHLMGGEINVTSN 475


>gi|283851239|ref|ZP_06368522.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573408|gb|EFC21385.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 710

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 27/264 (10%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           LP+A  ++   V+VT+ +R  R LT   EA   A+  K  F+  +S+E+R+P+  ++G T
Sbjct: 280 LPDAPYIIEAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLATMSHEIRTPMNGVMGMT 339

Query: 592 DL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +L L+T     L  +Q +Y++    S+  LL+++NDILD + ++AG M+L  +   L   
Sbjct: 340 ELALQT----DLTPEQREYLDLARQSALSLLDIINDILDFSRIEAGRMELARAPFSLRRT 395

Query: 651 LNEVKQ---SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           L    +   ++A +   N++R+ V  +   G  V D  RL Q+ + ++SN + F+  GS 
Sbjct: 396 LGSCLRLFDNLAAR-QGNDLRLAVAQEAPDG-LVGDAGRLSQVIANLVSNGLKFTRDGSV 453

Query: 708 VI-----------LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--- 752
            +           L   R +   F+FSV + G  IP D    +F+ F +    G  R   
Sbjct: 454 RVTVDTAPPLHCPLGPERGHAATFLFSVSDTGIGIPRDKHDHIFDYF-TQLDAGLSREAG 512

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGLSI  + + L GG + + S
Sbjct: 513 GTGLGLSISRNLVALMGGRIWVES 536


>gi|197117203|ref|YP_002137630.1| Hpt domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086563|gb|ACH37834.1| sensor histidine kinase response regulator, Hpt domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 724

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 15/233 (6%)

Query: 556 TEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           TE  EAL KA+     K+ F+ ++S+E+R+P+  +IG   LL  + L   +  Q  Y+E 
Sbjct: 200 TELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLAKLLMETPL---DKVQQGYMES 256

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  LL ++N+ILD++ V+AG++ L      L   L+   Q    +  E  +R+++ 
Sbjct: 257 LSDCAENLLTIINEILDVSKVEAGMITLEAIVFDLRRFLDRSLQPFVLRGQEKGVRVRLE 316

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNG 727
           +   L   V  D  RL QI   +L NA+ F+ KGS   T  L  + +NG    FSV + G
Sbjct: 317 AYPGLPELVLGDPVRLRQILGNLLGNALKFTQKGSITLTAALTGSGENGVGLKFSVADTG 376

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
             I  +  + +F +F S A     R   G GLGLSI +S + L GG +S+ S+
Sbjct: 377 IGIAPEAIEVIFEKF-SQADSSTTRLYGGTGLGLSISKSLVELMGGELSVQSA 428


>gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 1096

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 2/227 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R + EKN  L +AD +K+ F+ + S+ELR+PL  IIG  + L+   +G +   Q+  +  
Sbjct: 422 RQIGEKNAKLEEADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDMLPAQASQLRL 481

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S+  L  LV+D+LD+  +  G M+L+   +  +  L  V Q +      +  +  V 
Sbjct: 482 ITFSARRLSRLVDDLLDIYRIREGRMRLDLQPVDASHALRNVLQLLQPTFQVDPAKFHVD 541

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             G L +  AD  R  QI   +LSNA+ +       I    R +G    +++++G  I  
Sbjct: 542 LPGDLPALTADPVRFEQILFNLLSNAVKYGGGSEVYITAEERPSGHVALAIRDHGPGIAA 601

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           D  + +F+    +     GQ  G GLGL+I     +L  G + +SS+
Sbjct: 602 DSMERIFHPLEQLMPDGSGQATGTGLGLTIARHLADLMAGSIEVSST 648


>gi|300864607|ref|ZP_07109465.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337356|emb|CBN54613.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 708

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 156/290 (53%), Gaps = 17/290 (5%)

Query: 498 DLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           +L A  I  F+ +R  ++L    + L  +V E   + L +A  +L F  + +  RAE AL
Sbjct: 404 NLVALAIEGFERQRAQQALSKAKQELELTV-ENRTVQLKSANKLLRF-EIAERKRAEVAL 461

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613
            E       A   K++F+ ++S+ELR+PL  IIG++++L+  +L S    +     ++ I
Sbjct: 462 QEALHKAEAASRAKSTFLANMSHELRTPLNAIIGYSEMLE--ELASDEGLEDLLPDIQKI 519

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            ++   LL L+NDILDL+ ++AG M+L   +  L DL+ +V  ++    H+N+ +++V  
Sbjct: 520 RSAGKHLLTLINDILDLSKIEAGKMELYLESFDLADLVGDVIATLHPLAHKNSNKLEVSC 579

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNN---G 727
              LG    D  ++ QI   +LSNA+ F+  G TV L A R+   N D+++    +   G
Sbjct: 580 CSDLGVVFTDLTKVRQILFNLLSNALKFTENG-TVRLSATREMGSNSDWVYLCVADTGIG 638

Query: 728 SSIPEDMCK-SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            S+ +  C   VFN+  ++  R +  G GLGL+I   F  + GG +++ S
Sbjct: 639 MSVEQQQCLFEVFNQGDASTTR-KYGGTGLGLAISRRFCQMMGGDITVES 687


>gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 895

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 133/251 (52%), Gaps = 11/251 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R+E  L   N  L + D+ K +F  ++S+ELR+PLT +IG  D L+ +       ++
Sbjct: 197 DENRSE--LEASNLKLVEMDKAKTNFFANISHELRTPLTLLIGPLDRLRHNGDQPSAKER 254

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ +  ++  L+ L+ND+L+L  +D+G ++L  +T+ L   L  + +S      E  
Sbjct: 255 EELLDIMQQNAMRLMRLINDLLNLVRLDSGTLQLRPATLELRHYLEGICRSFYPMASERR 314

Query: 667 IRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVK 724
           +     I DG   +   DR ++ +I   +L NA+ F+  G  +IL+A RD G+F+   V+
Sbjct: 315 LDFTWEIEDGGQPNVNLDRDKVEKILLNLLFNAIKFTPPGGKIILRARRD-GEFLRIEVE 373

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGV 781
           ++G  I  +   S+F+RF        RR  GVG+GL++V     LHGG V  SS   EG 
Sbjct: 374 DSGQGIAAEELASIFDRFWQAETSSNRRYQGVGIGLALVRDLARLHGGDVEASSVQGEGT 433

Query: 782 ---TTINCRIP 789
               ++N  +P
Sbjct: 434 VMRVSLNAEVP 444



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 682 ADRQRLLQIFSKILSNAMD----FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            ++ +L+ +F  +L N++D       +G  + ++ +          ++NG  I  D    
Sbjct: 773 GNQNQLMHVFINLLQNSVDSLRERGGEGREIRIRCSEVEERVSLVFEDNGMGISPDEIDR 832

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           VF+ F +    GQ  GVGLGLSI    I  H G +++ S
Sbjct: 833 VFDAFFTTKKVGQ--GVGLGLSICHRIIQQHKGSINVES 869


>gi|218440934|ref|YP_002379263.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173662|gb|ACK72395.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1013

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 19/223 (8%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDI 627
           K+ F+ ++S+E+R+P+  I+GF DLLK      +   Q++ YV+ ISAS   LL L+NDI
Sbjct: 531 KSEFLANMSHEIRTPMNAILGFCDLLK----DRITEPQTRGYVDLISASGKTLLELINDI 586

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
           LDL+ ++AG ++LN+  + L +L+ E++Q    K  + N+ + V I +    + + D  R
Sbjct: 587 LDLSKIEAGKLELNFEPLYLRELIQEIQQIFFQKALKKNLSLLVEIQENVPNTILFDEIR 646

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----------FIFSVKNNGSSIPEDMC 735
           L QI   ++ NA+ F+ +G   I   A+ N D            I SV+++G  I +D  
Sbjct: 647 LRQILFNVVGNALKFTEQGYVKISVDAQTNDDNCESNQTNTINLILSVEDSGIGIAQDQQ 706

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             +F+ F     +  R+  G GLGL+I      +  G + + S
Sbjct: 707 IRIFDAFKQTEGQSTRKYGGTGLGLAITRRLTEMLEGKIDLQS 749


>gi|150003606|ref|YP_001298350.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149932030|gb|ABR38728.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 807

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 16/240 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  ++   + 
Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  +  ++ +LL L++DILDL+ +++G  +   S   +N L +E+ +S+  K+ 
Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 673

Query: 664 ENNIRIKVISDGKL-GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                ++++ +  L G  V AD+ RL Q+ S  ++NA+ F+  GS  +    + +G   F
Sbjct: 674 AG---VELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            V++ G  IP++  K+VF+RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 731 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785


>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1267

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 13/256 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   + E+ALTE  E    +  +K+ F+ ++S+E+R+P+  IIGF  LL  ++   LN
Sbjct: 486 DVTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQTQ---LN 542

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           SKQ  Y+  I + S  LL ++NDILD + ++AG M + +    L +++ ++   +  +  
Sbjct: 543 SKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQAS 602

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  + +   +  G       D  RL Q+   + +NA+ FS +G+  +     D  D    
Sbjct: 603 QKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFSDQGNIFLRVEKIDQSDSDSD 662

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                FSV++NG  + E+  + +FN F        R+  G GLGL+I +  + L GG +S
Sbjct: 663 QVIISFSVEDNGIGLTEEQMQRLFNSFSQADSSTTRKYGGTGLGLAISKYLVELMGGEIS 722

Query: 774 ISSSDEGVTTINCRIP 789
           +SS     +T +  +P
Sbjct: 723 VSSEYGVGSTFSFSLP 738


>gi|126456548|ref|YP_001077059.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106a]
 gi|167908208|ref|ZP_02495413.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167924404|ref|ZP_02511495.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei BCC215]
 gi|242313239|ref|ZP_04812256.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106b]
 gi|126230316|gb|ABN93729.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106a]
 gi|242136478|gb|EES22881.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106b]
          Length = 771

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 217/512 (42%), Gaps = 81/512 (15%)

Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
           YE +L +LT  + + D++  L + N S   L   D   +   P  D      R+ +    
Sbjct: 129 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRD----VYRAYDGRGA 184

Query: 368 QLNWKTWKENIFSVYKSS-ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMFEN 418
           ++     +  + S   +S E H   W  P +GQ + +   ++P         G + +  +
Sbjct: 185 RVRASALEHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRD 241

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE------- 471
           ++++ +       L ++    ++   + +   G + RI   NPA R ++  +E       
Sbjct: 242 ISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCD 297

Query: 472 -----------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDERK 512
                      N   P +       I N+   C R     DG  + A +  S  FD+   
Sbjct: 298 VAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER-- 351

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---EIK 569
                     D+ +  S+      +       V  S+R  R      +A R+AD    +K
Sbjct: 352 ----------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNRLK 395

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           +  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD
Sbjct: 396 DELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILD 452

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRL 687
            +++  G ++L+   + L  ++N+V  ++      + I + V  +  LG+ +   D +RL
Sbjct: 453 ASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--ECALGTCIVSGDGERL 510

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F     
Sbjct: 511 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 570

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 571 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|269962916|ref|ZP_06177255.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832361|gb|EEZ86481.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 566

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 16/251 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S+  E  L ++ EA  KA      FV  +++ELR+PL  ++G  +LL  ++LG    +Q 
Sbjct: 187 SLEREVELRKRAEASEKA---TKEFVAMINHELRTPLNGVLGSAELLSKTELGD---EQQ 240

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QY+  +  S  +L  ++ND+LD + ++AG+M++        DL N +    A K  E  I
Sbjct: 241 QYLGNLIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRI 300

Query: 668 RIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
              +  D KLG     V D +R+ QI   ++ NA+ F+  G  V+L+    +G   F V+
Sbjct: 301 HFSI--DKKLGIPEFLVGDFERITQILVNLIGNAIKFTHLGG-VVLRVEWVDGYAHFEVE 357

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IP +  K++F+ FV  A R  +R   G GLGL+I ++ ++L  G +S  S     
Sbjct: 358 DTGIGIPFEAQKALFDPFV-QADRSTKRSFEGSGLGLAICKNLVDLMDGEISFVSEPRKG 416

Query: 782 TTINCRIPSKE 792
           TT    +P K+
Sbjct: 417 TTFKVVLPLKQ 427


>gi|148254874|ref|YP_001239459.1| putative sensor histidine kinase membrane protein [Bradyrhizobium
           sp. BTAi1]
 gi|146407047|gb|ABQ35553.1| putative sensor histidine kinase, putative membrane protein
           [Bradyrhizobium sp. BTAi1]
          Length = 532

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 8/218 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---ISASSTILL 621
           A+  K+ F+  +S+ELR+PL  I+GF++++K+   G+       Y EY   I  S   LL
Sbjct: 259 ANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPVYKEYSADIHNSGVHLL 316

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           NL+N+ILDL+ ++AG  +LN   + L  ++ +    +  +     + I  + +  +    
Sbjct: 317 NLINEILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRASSRGLTIHEVFEQNMPRLW 376

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           AD + + Q+   +LSNA+ F+ +G  + LKA    +G    SVK+ GS IPE+    V  
Sbjct: 377 ADERAIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPENEIPIVLA 436

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F   SN+ +   +G GLGL I ++ I +HGG  ++ S
Sbjct: 437 SFGQGSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKS 474


>gi|329955232|ref|ZP_08296189.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328526231|gb|EGF53250.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 929

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 136/251 (54%), Gaps = 11/251 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R +R L    E    +D++K++F+ ++S+E+R+PL  I+GF+ ++  S   + +
Sbjct: 501 DITEMERMKRELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDD 557

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y + + A++  LL L+N+ILDL+ ++AG+++   + + L+ L NE+  ++  +  
Sbjct: 558 EERKNYYDIVEANNERLLQLINEILDLSKIEAGMVEFTIAPMRLHLLCNEIYNALKFRCP 617

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
              + ++++ +      V   D+ R+ Q+ S ++ NA  F++ GS V     R   +  F
Sbjct: 618 ---MGVELVYEASDEDIVIEGDKNRIFQVVSNLIGNAFKFTTNGS-VSYGYRRKGSEIEF 673

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V + G  I  D    VF RFV   +  Q  G GLGLSI ++ I   GG +S+SS     
Sbjct: 674 HVSDTGIGIEADKLSKVFERFVKVNNFAQ--GTGLGLSICKTIIERLGGTISVSSEMGKG 731

Query: 782 TTINCRIPSKE 792
           TT    +P  E
Sbjct: 732 TTFLFTLPLSE 742


>gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1]
 gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1]
          Length = 1039

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 127/235 (54%), Gaps = 10/235 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           + A+ A     E   +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L + Q  
Sbjct: 362 LEAKNAAEHAKENAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---DLTATQKD 418

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV+ I  SS +LL+L+NDILD + +++G++++N  +  + + + ++   +A K+ E  I 
Sbjct: 419 YVDTIETSSQLLLSLINDILDFSKIESGMLQINPHSTSIRETIYDIASIVAPKVKEKGIE 478

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN-GDFIFSV 723
           + V  D  +    +AD  R+ Q+    +SNA+ F+ KGS  I    +   +N    +F V
Sbjct: 479 LNVDIDQNVPFRVLADDHRMRQVLMNFMSNAVKFTDKGSVTIGVHYQGESNNMASLMFEV 538

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +++G  I ++    +F  F        R+  G GLGL+I    I L GG + + S
Sbjct: 539 QDSGIGIDKERQSKIFEAFAQEDDSTTRQFGGTGLGLAISTQLIELMGGEIQLDS 593


>gi|192290576|ref|YP_001991181.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192284325|gb|ACF00706.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 531

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---I 613
           E       A+  K+ F+  +S+ELR+PL  I+GF++++K+   G+       Y +Y   I
Sbjct: 252 EARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPAYKDYSADI 309

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LLNL+N+ILDL+ ++AG  +LN   I L  ++ +    +  +     I I  + 
Sbjct: 310 HNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRATSRGITIHEVF 369

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPE 732
           +  +     D + + Q+   +LSNA+ F+ +G  + LKA    +G    SVK+ GS IPE
Sbjct: 370 EQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPE 429

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +    V   F   SN+ +   +G GLGL I +S I++HGG  ++ S
Sbjct: 430 EEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 475


>gi|116250541|ref|YP_766379.1| two-component regulator sensor histidine kinase protein [Rhizobium
            leguminosarum bv. viciae 3841]
 gi|115255189|emb|CAK06263.1| putative two-component regulator sensor histidine kinase protein
            [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1310

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + 
Sbjct: 1053 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1112

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Y+EY   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++E    +  
Sbjct: 1113 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1170

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  + + NG  
Sbjct: 1171 QANSQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1230

Query: 720  IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  V++ G  +     D     F +  S   R +  G GLGL + ++ ++ +    SI+S
Sbjct: 1231 VLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINS 1290

Query: 777  SDEGVTTINCRIPSK 791
            +    T +    PS+
Sbjct: 1291 APNEGTLVEITFPSQ 1305


>gi|172037290|ref|YP_001803791.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698744|gb|ACB51725.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 848

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 16/254 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ + E+ + L KA++ K  F+ ++++ELR+PL  IIG+ D L     G LN++Q + ++
Sbjct: 365 EKKVKERTKQLEKANQAKREFLGNINHELRTPLNLIIGYIDRLYQD--GYLNNEQKKQLD 422

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRI 669
            I  +S  LL+L+N ILD++ +++G + L  ++  L+ LL  +++      +    N+ +
Sbjct: 423 IIDRNSQHLLSLINQILDISKIESGHITLQENSFNLSQLLTNLQEVFNLSCYSKGLNLIL 482

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDFI 720
           +   + KL    AD+ +L QI   +L NA+ F+ KG   I         L  +++  ++ 
Sbjct: 483 ENKIEDKLNYIYADKNKLKQILINLLHNAVKFTDKGMIKISAEVSNHRSLHYSKNQPNYT 542

Query: 721 F--SVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               VK+ G  I  +    +F  F  +   R   +G GLGL I   FI L GG++++ SS
Sbjct: 543 LRIQVKDTGKGIAREEISQLFKAFEQTQTGRNLNQGTGLGLYISHQFIKLMGGNITVESS 602

Query: 778 DEGVTTINCRIPSK 791
               TT    IP K
Sbjct: 603 PHSGTTFTLEIPVK 616


>gi|298488282|ref|ZP_07006315.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157221|gb|EFH98308.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1200

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 11/255 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +V++T+  R E+ L E      +A+E K+ F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 690 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 749

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++  SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L   V +  + +
Sbjct: 750 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 808

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             E ++ +++  S+   G +  D  RL Q+   +L NA+ F+ +GS V+  AA D+   +
Sbjct: 809 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVAALDDSSRV 868

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              ++++G  I  +  + +F  F      + AH G   G GLGLSI    + L  G +S+
Sbjct: 869 RIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYG---GSGLGLSITRQLVQLMKGDISL 925

Query: 775 SSSDEGVTTINCRIP 789
            SS    T +N  +P
Sbjct: 926 HSSPGEGTLVNIDLP 940


>gi|289625887|ref|ZP_06458841.1| PAS [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330867533|gb|EGH02242.1| PAS protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 1185

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 11/255 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +V++T+  R E+ L E      +A+E K+ F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 669 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 728

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++  SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L   V +  + +
Sbjct: 729 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             E ++ +++  S+   G +  D  RL Q+   +L NA+ F+ +GS V+  AA D+   +
Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVAALDDSSRV 847

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              ++++G  I  +  + +F  F      + AH G   G GLGLSI    + L  G +S+
Sbjct: 848 RIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYG---GSGLGLSITRQLVQLMKGDISL 904

Query: 775 SSSDEGVTTINCRIP 789
            SS    T +N  +P
Sbjct: 905 HSSPGEGTLVNIDLP 919


>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 719

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 173/358 (48%), Gaps = 38/358 (10%)

Query: 456 IKLSNPAFRSLWKTEEN---RLSPGTHIRNIAATCSRYYNES-------DGWDLFAAIIT 505
           +K S   FRSL KT E+    LSP   I        + +  +       D ++LF     
Sbjct: 206 LKESAYRFRSLVKTAESVIILLSPDKKILEFNRMAEQLFGRTRHEVLGRDYYELFVPERF 265

Query: 506 SFDDERK---SLQG-TLELLSDSVL---------EYSIIPLPNAQ-----TMLTFVNVTD 547
             D  R+    L G  L LL + VL         ++S+  L +A+      +    ++T+
Sbjct: 266 WPDHNRQFATVLSGNPLRLLENYVLARGGEERMIQWSLSRLLDAKGGALGVLAVGQDITE 325

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R+E  L E  +A  +A   K+ F+ ++S+E+R+P++ IIG +++   +   +L  +Q 
Sbjct: 326 RKRSEVELCEARDAAEEASRAKSEFLANMSHEIRTPISAIIGMSEMTLNT---NLTGEQQ 382

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  +  ++  LL+++NDILD++ ++A  M+L      L ++L +    +  +  E  I
Sbjct: 383 GYLVTVKKAAESLLHIINDILDISKIEARKMELRPEDFNLYEMLEKQLSVLKVQAEEKGI 442

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
            ++  +SD     +  D  RL QI   ++ NA+ F+ KG   +    + +  +     F 
Sbjct: 443 ELRANVSDDVSRCYHGDEYRLGQIIINLVGNAIKFTEKGYVEVSVDHVGSFEEGAVLEFR 502

Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD 778
           VK+ G  I ED C+ +F  FV  NA   +R  G GLGL+I    + + GGH++ SS +
Sbjct: 503 VKDTGIGISEDKCEKLFESFVQLNAGYSKRHPGSGLGLAISRQLVEMMGGHITFSSRE 560


>gi|150375914|ref|YP_001312510.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
 gi|150030461|gb|ABR62577.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
          Length = 917

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 175/393 (44%), Gaps = 18/393 (4%)

Query: 412 TIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           T+ +F+   ++   LE +     +     ++ +S+G  ++  D RI ++N  +  ++ + 
Sbjct: 261 TLSLFQESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSDDRILVANSKYCEIFPSH 320

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV----- 525
           +     G   R I         E+   DL       + DER  L      L D       
Sbjct: 321 KPNTLRGRSFREIV----EQNLETGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGER 376

Query: 526 -LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +  S   +P+  T+  + ++T+  + +  L         A+E K+ F+  +S+ELR+PL
Sbjct: 377 WVRISKRKIPDGGTVAVYTDITELKQRQVELERAKSHAESANEAKSQFLASMSHELRTPL 436

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG++++L          +    ++ I+++   LL L+NDILDL+ ++A  M +   T
Sbjct: 437 NAIIGYSEMLIEEARDHKEEELVPDLDKIASAGRHLLTLINDILDLSKIEANKMDVFLET 496

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L +LL +V  ++A  M  N        +  LG   +D+ +L Q    +LSNA  F +K
Sbjct: 497 FSLAELLRDVAATVAPLMARNGNAFTQDFEDDLGKMHSDQTKLRQNLFNLLSNAAKF-TK 555

Query: 705 GSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           G  VIL+  R+        +F V + G  +  +    +FN F        R   G GLGL
Sbjct: 556 GGRVILRVRREQRAEHDWLVFQVSDTGIGMTPEQQDRLFNAFTQADASTTRNYGGTGLGL 615

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SI  SF  L GG V++ S     +     +P+K
Sbjct: 616 SITRSFCRLIGGVVTVESEAGKGSVFTMEVPAK 648


>gi|307318980|ref|ZP_07598411.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
 gi|306895394|gb|EFN26149.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
          Length = 1133

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 8/254 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++ +   G + 
Sbjct: 877  DITQWKRTEEELRNAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIG 936

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Y+EY   I  S   +L++VND+LD++ ++AG M L++  + LN+ ++E    +  
Sbjct: 937  --HPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQP 994

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+    G +   VAD + + QI   IL+NA+ F+  G  +++  + + NG  
Sbjct: 995  QANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSV 1054

Query: 720  IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            I  +++ G  +  +        F  V+   R +  G GLGL + ++    +    +I+S+
Sbjct: 1055 ILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSA 1114

Query: 778  DEGVTTINCRIPSK 791
                T +    PS+
Sbjct: 1115 PNEGTLVEISFPSQ 1128


>gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 676

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 11/232 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  I+G   LL  + +G+    Q++Y+E    S   L  L++DIL
Sbjct: 302 KSEFLANMSHEIRTPLNGIMGMIQLLDGTPVGA---DQNKYIELALTSCNRLTRLLSDIL 358

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           DL+ ++AG+M+++ S     DL N +    A +     + +K I D  +    + D  R+
Sbjct: 359 DLSRIEAGMMEIHESKFRFADLRNSILGLFAVESLTKAVTLKCIIDPTIHPEVIGDEGRV 418

Query: 688 LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRF 742
           LQI   ++ N + F+ +GS  +      +  N D+  +F+V + G  I ED  K++F  F
Sbjct: 419 LQILFNLVGNGLKFTKEGSVTVEITPLGSEKNNDYRVLFTVSDTGIGIHEDHLKNLFKPF 478

Query: 743 VS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V    ++  + +G GLGLSIV+  ++L GG + + S     T++N  +P K+
Sbjct: 479 VQIEKSYTRKYQGAGLGLSIVKKLVHLMGGSIEVDSVVGEGTSMNVVLPFKQ 530


>gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 9/222 (4%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A   A+  K+ F+  VS+ELR+PL  I+G+ ++L  +K+   +    ++++ I  S+  +
Sbjct: 345 AAESANSAKDRFLAMVSHELRTPLNPIVGYAEIL-AAKIE--DPMAQRFLKIIKESAKGM 401

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV+DILD + +++G + +   T  ++DLL+ V + I +   E   +I+V  DG     
Sbjct: 402 ASLVSDILDYSMIESGRIDIEVETFRMSDLLSLVSRQIESVALERGNKIQVDLDGGDPWV 461

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNGSSIPEDMCK 736
            AD+++L Q+ S +++NA  F+  G  +I  +A       +SV+    + G  IPE   +
Sbjct: 462 EADKRKLSQVVSNLVANACKFTQNGKILISSSASQTSKEAYSVRIEVSDTGIGIPESELE 521

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++F  F  + + H+ + RGVGLGL+I    +   GG +S+SS
Sbjct: 522 TIFEPFEQLGSVHKAETRGVGLGLAICRQLVGALGGTISVSS 563


>gi|46580686|ref|YP_011494.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450105|gb|AAS96754.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 733

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E    A+  K++F+ ++S+E+R+PL  ++G  DLL+ +    L++ Q++Y+    
Sbjct: 339 LREAKEKADNANAAKSAFLANMSHEIRTPLNGLLGMLDLLEAT---GLDAGQAEYLGMAR 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L +L+ DILDL+ ++AG + L      L+D+L  ++++ A    E  + ++   D
Sbjct: 396 RSGRRLTDLLGDILDLSRIEAGKLVLAEQPFTLSDVLASIRETFAPLSREKGLPLEFALD 455

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSS 729
              G F+ D  R+ QI   ++ NAM F+++G        +L         +F V ++G  
Sbjct: 456 AVPGPFLGDAVRVRQILLNLVGNAMKFTNRGQMKLEVKTLLPMPDGRARILFMVHDSGCG 515

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPE+   S+   F  V      + +GVGLGL+I  + ++ + G +++ S
Sbjct: 516 IPEEQVGSICEPFTQVEAPLTKRYQGVGLGLAITRTLVHAYDGTLTVDS 564


>gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
 gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
          Length = 1191

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 132/259 (50%), Gaps = 26/259 (10%)

Query: 547  DSVR-AERALTEKNEALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            DS+R +E  L ++ EAL  A          ++ K+ F+ ++S+E+R+P+ +I GF+DLL 
Sbjct: 782  DSLRESEAQLIQQKEALEDAIAIAQAADFANQAKSEFLANMSHEIRTPMNSICGFSDLLL 841

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             S+L   N KQ  ++E + A+S  LL L+NDILD + ++A  + LN     L  LL EV+
Sbjct: 842  RSQL---NPKQRHWIEILQANSNRLLALINDILDFSKIEARKLHLNPREFNLETLLQEVR 898

Query: 656  QSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             S   +     +++   I        + D  RL Q+ S ++SNA+ F+  G   I  + +
Sbjct: 899  FSFTPQAERKGLQLTHEIEPDVPRHLIGDDFRLQQVLSNLVSNAIKFTETGEVKIAVSQQ 958

Query: 715  D----NGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
                 NG  I    FSV++ G  I  D  +++F  F        RR  G GLGL+I    
Sbjct: 959  GETEVNGGIIVPLRFSVQDTGIGISPDAQENLFQPFTQVDSSATRRYGGTGLGLTICRRI 1018

Query: 765  INLHGGHVSISSS-DEGVT 782
            + L GG + + S  D G T
Sbjct: 1019 VQLMGGEIHVDSEVDVGST 1037


>gi|329928581|ref|ZP_08282448.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937697|gb|EGG34106.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 1219

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 14/255 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L ++ + L    + K+ F+ ++S+ELR+PL +++  + LL  +K G+L+SKQ +Y
Sbjct: 523 KARMQLEQQAKQLSITTKYKSEFMANMSHELRTPLNSLLILSQLLSENKDGNLSSKQIEY 582

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S + LL ++++ILDL+ VDAG M++NY  + L D+   V+Q+ A      +I +
Sbjct: 583 AQTIYMSGSDLLKMIDEILDLSKVDAGKMEINYEDVQLPDIEAFVEQNFAAVASRKHINL 642

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDN--------GD 718
            V  + +L  S V D  R+ QI   +LSNA  F++ GS  +L  KA +D          D
Sbjct: 643 GVRIEEELPQSIVTDSHRVKQILRNLLSNAFKFTNSGSVELLVEKADKDKLPVYLNAESD 702

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           ++ F+VK+ G  IP D    +F  F        R+  G GLGLSI      L GG +++ 
Sbjct: 703 YVSFAVKDTGIGIPADKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGGGITVE 762

Query: 776 SSDEGVTTINCRIPS 790
           S +   +     +P+
Sbjct: 763 SEEGKGSCFTLFLPA 777


>gi|289646215|ref|ZP_06477558.1| PAS [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 1185

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 11/255 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +V++T+  R E+ L E      +A+E K+ F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 669 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 728

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++  SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L   V +  + +
Sbjct: 729 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             E ++ +++  S+   G +  D  RL Q+   +L NA+ F+ +GS V+  AA D+   +
Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVAALDDSSRV 847

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              ++++G  I  +  + +F  F      + AH G   G GLGLSI    + L  G +S+
Sbjct: 848 RIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYG---GSGLGLSITRQLVQLMKGDISL 904

Query: 775 SSSDEGVTTINCRIP 789
            SS    T +N  +P
Sbjct: 905 HSSPGEGTLVNIDLP 919


>gi|172038636|ref|YP_001805137.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700090|gb|ACB53071.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1082

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 10/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  +AE AL +  E    A+  K+ F+  +S+ELR+PL  I+GFT +++     SL 
Sbjct: 577 DITERKQAEEALKQAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQVMQRDH--SLK 634

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  Q ++ I  S   LL L+NDIL++  ++AG    N +   L  LL+ ++  +  K  
Sbjct: 635 GEHRQNLDIIGRSGEHLLELINDILEMTKIEAGRTTFNQTQFDLYRLLDNLESMLHLKAE 694

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E N+++    +  L  ++  D  +L Q+   +L NA+ F+ +G  ++      + D    
Sbjct: 695 EKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIKTNHSTDQNPT 754

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               F +++ G  I  +    +F  F  +   R    G GLGL I   F+ L GG +++S
Sbjct: 755 IILTFEIEDTGPGIAAEEVNQLFEAFGQTETGRNSNEGTGLGLPISRKFVELMGGEITVS 814

Query: 776 S 776
           S
Sbjct: 815 S 815


>gi|15964474|ref|NP_384827.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
            1021]
 gi|307308417|ref|ZP_07588121.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
 gi|15073651|emb|CAC45293.1| Two-component histidine kinase, stationary-phase regulator of cell
            surface physiology and symbiosis [Sinorhizobium meliloti
            1021]
 gi|306901020|gb|EFN31628.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
          Length = 1134

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 8/254 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++ +   G + 
Sbjct: 878  DITQWKRTEEELRNAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIG 937

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Y+EY   I  S   +L++VND+LD++ ++AG M L++  + LN+ ++E    +  
Sbjct: 938  --HPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQP 995

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+    G +   VAD + + QI   IL+NA+ F+  G  +++  + + NG  
Sbjct: 996  QANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSV 1055

Query: 720  IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            I  +++ G  +  +        F  V+   R +  G GLGL + ++    +    +I+S+
Sbjct: 1056 ILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSA 1115

Query: 778  DEGVTTINCRIPSK 791
                T +    PS+
Sbjct: 1116 PNEGTLVEISFPSQ 1129


>gi|254881166|ref|ZP_05253876.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254833959|gb|EET14268.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 809

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 16/240 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  ++   + 
Sbjct: 559 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 616

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  +  ++ +LL L++DILDL+ +++G  +   S   +N L +E+ +S+  K+ 
Sbjct: 617 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 675

Query: 664 ENNIRIKVISDGKL-GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                ++++ +  L G  V AD+ RL Q+ S  ++NA+ F+  GS  +    + +G   F
Sbjct: 676 AG---VELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 732

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            V++ G  IP++  K+VF+RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 733 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 787


>gi|53716107|ref|YP_106501.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 23344]
 gi|121596954|ref|YP_990599.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei SAVP1]
 gi|126446255|ref|YP_001079435.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10247]
 gi|167003184|ref|ZP_02268974.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei PRL-20]
 gi|254176005|ref|ZP_04882663.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 10399]
 gi|254203510|ref|ZP_04909871.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei FMH]
 gi|52422077|gb|AAU45647.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 23344]
 gi|121224752|gb|ABM48283.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei SAVP1]
 gi|126239109|gb|ABO02221.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10247]
 gi|147745749|gb|EDK52828.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei FMH]
 gi|160697047|gb|EDP87017.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 10399]
 gi|243061229|gb|EES43415.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei PRL-20]
          Length = 771

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 213/514 (41%), Gaps = 81/514 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANK 364
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D    +  R A  
Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARV 186

Query: 365 LPEQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIW 414
               L      E++    +S+  E H   W  P +GQ + +   ++P         G + 
Sbjct: 187 RASAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVL 237

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--- 471
           +  +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E   
Sbjct: 238 IVRDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAA 293

Query: 472 ---------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FD 508
                          N   P +       I N+   C R     DG  + A +  S  FD
Sbjct: 294 RGCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFD 349

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD-- 566
           +             D+ +  S+      +       V  S+R  R      +A R+AD  
Sbjct: 350 ER------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTS 391

Query: 567 -EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V 
Sbjct: 392 NRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVG 448

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILD +++  G ++L+   + L  ++N+V  ++      + I + V           D +
Sbjct: 449 DILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGE 508

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F   
Sbjct: 509 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGHGISPEFLPHVFEAFRRA 568

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 569 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|319640176|ref|ZP_07994902.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388163|gb|EFV69016.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 820

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 16/240 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  ++   + 
Sbjct: 570 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 627

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  +  ++ +LL L++DILDL+ +++G  +   S   +N L +E+ +S+  K+ 
Sbjct: 628 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 686

Query: 664 ENNIRIKVISDGKL-GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                ++++ +  L G  V AD+ RL Q+ S  ++NA+ F+  GS  +    + +G   F
Sbjct: 687 AG---VELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 743

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            V++ G  IP++  K+VF+RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 744 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 798


>gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 932

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 118/220 (53%), Gaps = 10/220 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A ++K+ F+ + S+E+R+PL  I+GF++LLK ++L  L   Q  Y+E I  S+  LL +
Sbjct: 265 QASKVKSEFLANTSHEIRTPLNGILGFSELLKKTELNPL---QEDYLETIYESAKGLLTI 321

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682
           +NDILD + ++ G + L Y  + L  +L E  +  A   HE  +R+  I D  +    + 
Sbjct: 322 INDILDFSRLETGKLTLEYKPVRLRQVLEEALRLQAPAAHEKKLRLLTIVDHDIPEHLLG 381

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+ + +LSNA+ F++ G  +I  +  D  D      F + ++G  + +D  + +
Sbjct: 382 DPLRLKQVLTNLLSNAIKFTNVGHILISVSKEDRADNQITLQFRITDSGIGLNQDQQEKL 441

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F+ F        R   G GLGL+I +  ++   G + + S
Sbjct: 442 FDAFTQLDASDSRTHGGTGLGLAIAKGLVDRMHGEIGVES 481


>gi|124382909|ref|YP_001025091.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10229]
 gi|254205387|ref|ZP_04911740.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei JHU]
 gi|147754973|gb|EDK62037.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei JHU]
 gi|261827034|gb|ABM99494.2| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10229]
          Length = 772

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 213/514 (41%), Gaps = 81/514 (15%)

Query: 307 HTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANK 364
           H YE +L +LT  + + D++  L + N S   L   D   +   P  D    +  R A  
Sbjct: 128 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARV 187

Query: 365 LPEQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIW 414
               L      E++    +S+  E H   W  P +GQ + +   ++P         G + 
Sbjct: 188 RASAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVL 238

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--- 471
           +  +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E   
Sbjct: 239 IVRDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAA 294

Query: 472 ---------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FD 508
                          N   P +       I N+   C R     DG  + A +  S  FD
Sbjct: 295 RGCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFD 350

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD-- 566
           +             D+ +  S+      +       V  S+R  R      +A R+AD  
Sbjct: 351 ER------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTS 392

Query: 567 -EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V 
Sbjct: 393 NRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVG 449

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILD +++  G ++L+   + L  ++N+V  ++      + I + V           D +
Sbjct: 450 DILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGE 509

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F   
Sbjct: 510 RLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGHGISPEFLPHVFEAFRRA 569

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 570 EGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 603


>gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 999

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 8/250 (3%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +P +  + T  N    +     + E     ++ +++K+ F+  VS+ELR+PLT+I G   
Sbjct: 470 IPVSLIVTTMRNEAGEITGYLGIAEDITEYKRMNKMKSEFISTVSHELRTPLTSISGALG 529

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+  S+   L  K  + ++    ++  L +L+ND+LD+  + AG  KL++  + L++L  
Sbjct: 530 LIIGSRFEELPDKTQKLLKTAHRNNQRLSHLINDLLDIEKIAAG--KLHFD-MRLHELTL 586

Query: 653 EVKQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            V+Q+I T  H     ++ I++I D        D QRLLQ+ + +LSNA+ FSS    VI
Sbjct: 587 LVEQAIETNQHYGSSRDVSIRLICDANTVLVHVDSQRLLQVLANLLSNAIKFSSDHGQVI 646

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           ++   DNG  I SV + G  I +   + +F RF        R   G GLGL+I    I  
Sbjct: 647 VEVTTDNGKAIVSVIDQGPGINQAFRERIFQRFAQADSSDTRAKEGTGLGLAISRELIER 706

Query: 768 HGGHVSISSS 777
            GG +   S+
Sbjct: 707 MGGQIDFEST 716


>gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1295

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 142/269 (52%), Gaps = 16/269 (5%)

Query: 533  LPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            +P+  ++      +V+ +  A   L    E    A+  K++F+ ++S+E+R+PL  +IG 
Sbjct: 756  MPDGSSLWNGYLADVSSAKMASEQLRLAKEDAEAANRAKSAFLANMSHEIRTPLNGVIGM 815

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            TDLL  S   +L+ +Q  +++ +  SS  LL ++NDILD + ++AG +     +  L  +
Sbjct: 816  TDLLLGS---TLSHRQRAHLQIVKQSSDALLTILNDILDFSKIEAGKLVAERVSFNLRQV 872

Query: 651  LNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + E+ +++A +  +  I  I  I+       + D  RL Q+   ++ NA+ F+S+G  ++
Sbjct: 873  VGEMLKALALRASDKGIELIGDIAADVPTHVLGDPGRLRQVLVNLVGNAIKFTSQGEVIV 932

Query: 710  -LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             L+ +  N D +   F++ ++G  IPE+   ++F+ F        RR  G GLGL+I   
Sbjct: 933  RLECSAGNADEVGLHFAIIDSGIGIPEEKLATIFDAFAQADGSITRRYGGTGLGLTISAR 992

Query: 764  FINLHGGHVSISSS-DEGVT---TINCRI 788
               L GGH+ + S+  +G T   T+ C I
Sbjct: 993  LAELLGGHIRVDSTLGQGSTFHFTLRCGI 1021


>gi|153868804|ref|ZP_01998545.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152074621|gb|EDN71458.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 655

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 126/234 (53%), Gaps = 10/234 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+AL +  +    A+  K+ F+ ++S+E+R+P+  IIGF+D+L  SK+   + KQ  Y+
Sbjct: 158 AEQALKQAKDKAETANRAKSEFLANMSHEIRTPMNAIIGFSDIL-ASKIT--DKKQINYI 214

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-I 669
             I  ++  LL L++DILDL+ ++AG +++ Y  + L  +   ++Q  + K+ E NI  I
Sbjct: 215 SSIQTAAKSLLTLIDDILDLSKIEAGRLEIQYEEVNLQGIFIALQQVFSLKIAEKNIEFI 274

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKN 725
             I +    S   D  RL Q+   ++ NA+ F++ G   +     D      D   +V++
Sbjct: 275 MEIDETLPPSLFLDETRLRQMLLNLMGNAIKFTNSGYVKLCANKIDTEENYIDLTLAVED 334

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +G  IP +    +F  F     +  R+  G GLGL+I +  + +  G +S++SS
Sbjct: 335 SGIGIPAEQQTLIFESFRQQDGQSTRQYGGTGLGLTITKRLVEMMNGQISLTSS 388


>gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
 gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
          Length = 836

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 128/231 (55%), Gaps = 4/231 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623
           A+  K+ F+ ++S+ELR+PL  I GF++++ T   G L +++  +Y   I  S   LL+L
Sbjct: 593 ANHAKSEFLANMSHELRTPLNAINGFSEIMATEMFGPLGHARYKEYAGDILGSGQHLLSL 652

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDILD++ ++AG M L    + L++++ +  + +  +  +  ++I+V    +L    AD
Sbjct: 653 INDILDMSKIEAGKMTLRIEPVSLDEVIEDTLRLVRQRAEKAGLKIRVHMP-QLPEIEAD 711

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
            + L QI   +L+NA+ F+ +  TV + AA  + +   +V + G  I     + +   F 
Sbjct: 712 FRALKQILLNLLTNAIKFTPQHGTVTISAAMTDNNVHIAVADTGIGIAAKDMERLARPFE 771

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + N     + G GLGL++ +S I +H G + I S++   TT+N  +P ++
Sbjct: 772 QIENQFSKTKEGTGLGLALTKSLIEMHSGRLEIDSTEGQGTTVNVILPIRQ 822


>gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
 gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
          Length = 1756

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 13/259 (5%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTS 597
            +LT  +VT+  +   AL +  EA   A + K  F+ ++S+E+R+P+  IIG T L L+T 
Sbjct: 1009 VLTMSDVTERRQINEALRQAKEAADAASKAKTDFLANMSHEIRTPMNAIIGMTQLCLQTD 1068

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                L  +Q+ Y+  I ++S  LL ++ND+LD + ++AG ++L      L++LL ++   
Sbjct: 1069 ----LPPRQADYLRKIDSASQSLLGIINDVLDYSKIEAGRLELEQEPFALDELLEQLSDL 1124

Query: 658  IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             A +  E  + +    + ++ + +  D  RL QI   +LSNA+ F+  G  V+     D 
Sbjct: 1125 FAVRAKEKGVELLFAVEPEVPARLNGDMLRLGQILINLLSNAIKFTDHGEVVLAIRQLDG 1184

Query: 717  GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                     FSV++ G  +  +    +F  F        R+  G GLGL+I +  ++L G
Sbjct: 1185 APPGQTRLTFSVRDTGIGMSPEQQARLFQSFSQADSSTTRKYGGTGLGLAISQRLVSLMG 1244

Query: 770  GHVSISSSDEGVTTINCRI 788
            G + ++S+    +T +  I
Sbjct: 1245 GQIQVNSAAGAGSTFHFSI 1263


>gi|153011243|ref|YP_001372457.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum
            anthropi ATCC 49188]
 gi|223635612|sp|A6X5X4|PDHS_OCHA4 RecName: Full=Cell-division control histidine kinase pdhS
 gi|151563131|gb|ABS16628.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum
            anthropi ATCC 49188]
          Length = 1055

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 174/384 (45%), Gaps = 56/384 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 687  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------ETEGK-- 724

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 725  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 784

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 785  FCAVLRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADE 844

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K GS+ N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 845  KFGSIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIA 904

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 905  LMQPQANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEM 964

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R    A   +  G GLGL + ++ +
Sbjct: 965  NGDVVMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAETAKDWRSEGTGLGLPLTKAMV 1024

Query: 766  NLHGGHVSISSSDEGVTTINCRIP 789
              +    +I S+    T +    P
Sbjct: 1025 EANRAQFAIDSTPGHGTVVEIAFP 1048


>gi|294777585|ref|ZP_06743036.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294448653|gb|EFG17202.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 807

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 137/240 (57%), Gaps = 16/240 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  ++   + 
Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  +  ++ +LL L++DILDL+ +++G  +   S   +N L +E+ +S+  K+ 
Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVP 673

Query: 664 ENNIRIKVISDGKL-GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                ++++ +  L G  V AD+ RL Q+ S  ++NA+ F+  GS  +    + +G   F
Sbjct: 674 AG---VELVFEECLPGCHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            V++ G  IP++  K+VF+RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 731 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785


>gi|260777827|ref|ZP_05886720.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605840|gb|EEX32125.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1057

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 12/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           +VT   + E  L E      +A EIK+ F+ ++S+E+R+P+  IIG + L LKT     L
Sbjct: 276 DVTSRKQVEDELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKTD----L 331

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ  Y+  I  S+++LL ++NDILD + ++AG + +      L+D+L+ V      K 
Sbjct: 332 TPKQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIEEIEFYLDDVLHNVSMVTGQKA 391

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717
            E  + +   I      +   D  RL QI   +++NA+ F+ +G    S  ++++  D  
Sbjct: 392 FEKGLELLFDIPRDVPKTLYGDPLRLGQIIINLVNNAVKFTEQGEISVSVKVIRSLDDKI 451

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           +  FSVK+ G  + E+    +FN F        R+  G GLGLSI    + L GG +S+ 
Sbjct: 452 ELGFSVKDTGIGMSEEQSSKLFNAFTQADGSTTRKYGGTGLGLSICRRLVELMGGEISVD 511

Query: 776 S 776
           S
Sbjct: 512 S 512


>gi|153872721|ref|ZP_02001529.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152070813|gb|EDN68471.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 677

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 21/250 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + ++A+  K   L  A   K+ F+ ++S+ELR+PL +++  + LL  +K G+L  KQ +Y
Sbjct: 130 KTQQAIEAKANELELASRYKSEFLANMSHELRTPLNSLLILSQLLTNNKQGNLTDKQLEY 189

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I ++ + LL L+NDILDL+ V+AG ++++   I L D +  +KQ          +  
Sbjct: 190 AQTIHSAGSDLLKLINDILDLSKVEAGKIEIHLEEISLTDFIEIIKQKFCHVAENKELAF 249

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------------------STVIL 710
            + +++    +   D QRL QI + +LSNA  F+ +G                  ST ++
Sbjct: 250 DITVANDVPATLNTDEQRLNQIINNLLSNAFKFTHQGGIEIIVQSITEKSLQAPVSTSLI 309

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
              +      FSV + G  IP+D  + +F  F        RR  G GLGLSI      L 
Sbjct: 310 TDLQKGALIAFSVSDTGIGIPKDKQQVIFEAFQQADGTTSRRYGGTGLGLSISRQLARLL 369

Query: 769 GGHVSISSSD 778
           GG + + S +
Sbjct: 370 GGDLQLHSEE 379


>gi|147679019|ref|YP_001213234.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146275116|dbj|BAF60865.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 589

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 115/217 (52%), Gaps = 3/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LRK + ++  FV +VS+ELR+PLT+I GF + L    +G   +++ +Y++ I   +  L 
Sbjct: 355 LRKLELLRRDFVANVSHELRTPLTSIQGFLEALMDGTIGESQARE-RYLKVIHQETLRLN 413

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+N++LDLA +++G ++   + I +  L+  V   +  ++  + I +       L   +
Sbjct: 414 RLINELLDLAQIESGKVRWEINPIDVPSLVGRVILKLKPQIERHQITVVPEMPEGLPLML 473

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            +  R+ Q+ + +L NA+ +S  GSTV ++AA   G     V + G  IP +    ++ R
Sbjct: 474 GNEDRIEQVLTNLLENAVRYSPPGSTVTVRAAGREGKITVEVADRGPGIPPEDLPHIWER 533

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F  V  +      G GLGL+IV   I  HGG V + S
Sbjct: 534 FHRVEKSRSRSLGGTGLGLAIVRQIIEAHGGQVDVQS 570


>gi|257059046|ref|YP_003136934.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589212|gb|ACV00099.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1193

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 138/279 (49%), Gaps = 33/279 (11%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T    A+ AL +  E+   A+  K+ F+ ++S+E+R+P+  I+GF +LL+    G
Sbjct: 670 TITDITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----G 725

Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            ++  +S+ Y+  I++S  ILL L+NDILDL+ +D+G +++NY  I L  L+ E+ Q   
Sbjct: 726 IIDDPRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFV 785

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LK 711
               +  + + + I+D    + + D  RL QI   +L NA+ F+ +G+  I       L 
Sbjct: 786 EDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHEGAVKIAVKATKKLP 845

Query: 712 AARDNGDFIF------------------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
             R+  D ++                  SV++ G  I  +    +F+ F  +  +  R+ 
Sbjct: 846 ENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKY 905

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGL+I      + GG + + S     +T     P+
Sbjct: 906 GGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFPN 944


>gi|289670378|ref|ZP_06491453.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 291

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 44  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +V+D+LDLA ++AG + ++     L DL   ++  +   + +    + V  D
Sbjct: 104 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDTGKTMLVFDD 162

Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  I  +
Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIAAE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +++F  FV      Q+R  G GLGLSI + F  L GG V ++S
Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGVNS 267


>gi|239996859|ref|ZP_04717383.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Alteromonas macleodii ATCC 27126]
          Length = 884

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 133/246 (54%), Gaps = 32/246 (13%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEY 612
           + L K D  +N F+  +++ELR+PL  I+    +L+T        ++ ++ ++Q++Y+  
Sbjct: 519 QELEKQDNYRNEFLATLAHELRNPLGPIMSGASILETVDDEKTRKRVTAIINRQAEYMS- 577

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE----VKQSIATKMHENNIR 668
                     L+ND++D++ +  G +KL +  + + D+L++    V+Q +  K H  +I 
Sbjct: 578 ---------KLINDLMDVSRITRGKVKLEFERLKIQDVLSDSLEIVEQQVKAKKH--DIT 626

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +  + +    +   D+ RL QIFS I+ NA  ++ +   ++++  +D    + +VK+NG 
Sbjct: 627 VNCLEEDV--TVYGDKARLSQIFSNIIHNATKYTKESGKIVVEIRKDGVMIVVAVKDNGM 684

Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV---TT 783
            IPED  K VFN F    AH    + G+G+GL++V   + LH G VS+ S  EGV   +T
Sbjct: 685 GIPEDRLKDVFNMFTQIEAHSTHTKGGLGIGLTLVSKLVALHHGEVSVMS--EGVDRGST 742

Query: 784 INCRIP 789
              R+P
Sbjct: 743 FEVRLP 748


>gi|209527054|ref|ZP_03275569.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492482|gb|EDZ92822.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1376

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 127/239 (53%), Gaps = 17/239 (7%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +AL E     + A+  K+ F+ ++S+E+R+P+  I+GF DLL++  L S   +Q QYV+ 
Sbjct: 868  QALKEATRHAQAANRAKSEFLANMSHEIRTPMNAILGFCDLLQS--LVS-EPRQQQYVKS 924

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671
            I+AS   LL+L+NDILDL+ ++AG M+L+   I L  +L E+ Q    K  E  +  I+ 
Sbjct: 925  IAASGKTLLSLINDILDLSKIEAGKMELHQEPIDLRVMLEEIYQIFCHKAAEKKVELIRE 984

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNG--DFI 720
            I+D    + + D  RL QI   ++ NA+ F+ +G         S   L A          
Sbjct: 985  INDNLPKAIMFDEVRLRQILLNMVGNALKFTDEGWVKISVVTNSNTPLNAENPESTISLE 1044

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             ++ + G  I  +  + +F+ F+ +  +  R+  G GLGL+I +    + GG +S+ S 
Sbjct: 1045 IAIADTGIGIAPEQQQRIFDSFIQSEGQSTRKYGGSGLGLAITKRLTQMLGGTISLESQ 1103


>gi|254439947|ref|ZP_05053441.1| hypothetical protein OA307_4817 [Octadecabacter antarcticus 307]
 gi|198255393|gb|EDY79707.1| hypothetical protein OA307_4817 [Octadecabacter antarcticus 307]
          Length = 533

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 142/313 (45%), Gaps = 46/313 (14%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE--- 239
           L    + + +   + + +    L+W  D  G ++WAN SY + +E        AIG    
Sbjct: 145 LTATAMEHELETLRSIGEDSPQLIWKHDAEGVLIWANRSYMELSE-----ILHAIGPNDV 199

Query: 240 ----SRKLFKEE---------IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
                R++F +          I    + +   EK     +++L+ G +  +         
Sbjct: 200 LPWPPREVFNQTARPVGAAPVIDMHRVDTPDQEKPIWFEITSLKRGTDTIH--------- 250

Query: 287 GEAGIAIDVSKEITVNDQ-------LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
                AID S  +   D        LT T+     L+V + IFD +R L   N + V+L 
Sbjct: 251 ----FAIDASAVVFARDAQRSFVQTLTKTFA---QLSVGLVIFDSDRRLVLFNPALVDLT 303

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNG 397
            +   FL   P+    L+ LR    +PE  ++ +W++ + ++  ++    + +TW LPNG
Sbjct: 304 LLPTNFLIARPTLFSFLDRLRDNQMIPEPKDYASWRDQMVALESAATEGNYHETWPLPNG 363

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           QT  V    +P G   ++FE+++ ++ L  K+ + + +    ID+L+  VAVF   G + 
Sbjct: 364 QTFRVTGKPHPNGAIAFLFEDISDEISLTRKFRSQIDISAAVIDNLASAVAVFSSSGSLV 423

Query: 458 LSNPAFRSLWKTE 470
           L+N A+RSLW T+
Sbjct: 424 LANSAYRSLWGTQ 436


>gi|149277505|ref|ZP_01883646.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39]
 gi|149231738|gb|EDM37116.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39]
          Length = 938

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 11/245 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF N+ +  +    L +  E   +A   K+ F+ ++S+E+R+PL  +IGFTDL+  +KL 
Sbjct: 522 TFQNIHEHTKQRTELKKAKELAEQASMAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKLS 581

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +   Q QY+   + S+  LL ++NDILD + +++G ++L+  +  L +L N+    I  
Sbjct: 582 PV---QEQYLRIANESANALLGIINDILDFSKIESGKLELDIESCNLYELGNQAVNIITF 638

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN 716
           +    ++++     G L  ++ AD  RL Q+   +L NA+ F+  G     +     +D+
Sbjct: 639 QAQSKDLKVLFSIPGDLPPYIYADSLRLRQVLINLLGNAVKFTDHGQIELKIKFVGVKDS 698

Query: 717 GDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           G F+  F V++ G  I  D    +F  F        +R  G GLGL+I    + L G  +
Sbjct: 699 GHFVFRFEVRDTGIGIKLDKQGQIFEAFSQEDGYTTKRYGGTGLGLTISNQLLGLMGSKL 758

Query: 773 SISSS 777
            + SS
Sbjct: 759 QVKSS 763


>gi|90023024|ref|YP_528851.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952624|gb|ABD82639.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 761

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E  +  + A+ +K +F+  +S+ELR+PL +IIGF+         S + K    +  I
Sbjct: 515 ALEEALQVAKDANSVKTNFLACMSHELRTPLNSIIGFSVRCLKILSPSHDQKLITAITVI 574

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL L+ND+LDLA V+AG M +  + I +   ++EV  ++   + +  I IKV +
Sbjct: 575 ERNGQHLLGLINDVLDLAKVEAGKMTITKAPIDIAATMDEVVTTLQPLVDDKPIEIKVKT 634

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSI 730
              L + +AD+QR  QIF  + +NA++F+ +G   I   L+  +       +V++ G  I
Sbjct: 635 P-PLNTILADQQRFKQIFINLGANAINFTREGRVQIDYALETTKGKQALRINVRDTGIGI 693

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++    VF RF  V    +    G GLGL++V  F+ LHGG + ++S
Sbjct: 694 AKEHVAKVFQRFEQVGEQFQPGSLGSGLGLALVHEFVTLHGGRIKVTS 741


>gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 528

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T    A R L + +E L++AD +K  F+  +S+ELR+PLT I+G+  +LK     +  
Sbjct: 128 DITGQKDAARRLAQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWIQILKEE---ATP 184

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +  +Q +E I  +  +   L+ D+LD++ ++AG + L+   + L+ ++N   Q++     
Sbjct: 185 ADLAQGLEVIERNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVVNAAVQTVRPTAD 244

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +IR+  +     G  + D+ RL QI   +L+NA+ F+     + +   R   +    V
Sbjct: 245 AKDIRLTSLLADVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQVTMHRAKSNVEVIV 304

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +NG  I  +    VF+RF        R+  G+G+GLSI      LHGGH+ +SS
Sbjct: 305 SDNGQGIAPEFLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHGGHLKVSS 359


>gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 932

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 170/355 (47%), Gaps = 23/355 (6%)

Query: 447 VAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD-LFAAII 504
           V +  P+G I+  NP F      TE+  +     I          Y E   W  + A  +
Sbjct: 445 VVITDPEGNIEYINPTFTEHTGYTEKEVIGQNPRILKSGLMEDSVYEEF--WKTILAGNV 502

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERAL----TEKN 559
              +   K   G  EL  +  +  +I+   N + ++T FV V + +  ++ L        
Sbjct: 503 WHGEFHNKKKNG--ELYWEDAIVSAIV---NQKGVITNFVAVKEDITEKKKLWVDLIASK 557

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   ++D +K +F+ ++S+E+R+P+  I+GF +LLK   L     +Q++Y+E I+ S   
Sbjct: 558 EKAEESDRLKTAFLANISHEIRTPMNGILGFAELLKEPHLSG--EEQAEYIELINQSGKR 615

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---ISDGK 676
           +L L+NDI+D++ ++AG   ++     +N LL+ +           N+ +     +SD +
Sbjct: 616 MLALINDIVDISRIEAGETMIHVEPTHVNKLLHSLCTFFRPLAANKNLLLSCNNGLSDEE 675

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  +L QI + ++ N + FS +G  V +   R      FSV ++G  IPE M +
Sbjct: 676 C-VIETDSAKLTQILTNLVQNGLKFSVEGE-VRVGYIRKEDLLEFSVSDSGIGIPESMKE 733

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           S+F RF  V N+      G GLGLSI ++++ + GG + + S +   +T    +P
Sbjct: 734 SIFERFRQVDNSLTRHHEGSGLGLSISKAYVEMLGGTIRVESGEGNGSTFIFTLP 788


>gi|229155590|ref|ZP_04283698.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342]
 gi|228627908|gb|EEK84627.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342]
          Length = 438

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   +E + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 206 HSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 264

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 265 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 323

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A +  G  +  VK+ G  I
Sbjct: 324 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVIEVKDEGMGI 380

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 381 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 437


>gi|288961674|ref|YP_003451984.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288913954|dbj|BAI75440.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1960

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 18/246 (7%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            V A+ AL EK E L    + K+ F+ ++S+ELR+PL +++  + LL  +   +L+ +Q +
Sbjct: 1228 VFAKAALEEKAEQLALTSKYKSQFLANMSHELRTPLNSLLILSKLLADNPDTNLSDRQVE 1287

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +   I ++ + LL L+NDILDL+ +++G + L    +VL DL N V+++ +    E  + 
Sbjct: 1288 FARTIHSAGSDLLGLINDILDLSKIESGTVTLEIGEVVLGDLRNHVERTFSQVAQEKKLA 1347

Query: 669  IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------- 718
              +  D  L + +  D +RL Q+ + +LSNA  F+  G  +  + A   G          
Sbjct: 1348 FTIEMDAALPAGIQTDEKRLSQVLNNLLSNAFKFTETGG-ITFRVAPATGGWSAAHPTLD 1406

Query: 719  -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                   F+V + G  IPED  + +F  F        R+  G GLGLSI      L GG 
Sbjct: 1407 AAASVLAFTVIDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGE 1466

Query: 772  VSISSS 777
            + ++S+
Sbjct: 1467 IRVAST 1472


>gi|298527776|ref|ZP_07015180.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511428|gb|EFI35330.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 949

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 135/255 (52%), Gaps = 12/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGS 601
           ++VT+    ER L +      KA+++K+ F+ ++S+E+R+P++ +IG +  LLKTS    
Sbjct: 552 LDVTEKKAGERQLLKAIAETEKANQLKSRFLANISHEVRTPISGVIGLSSMLLKTSA--- 608

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  Q + ++ I+  S  LL ++N+ILD + +++G   L      L+ +   +  ++ ++
Sbjct: 609 -DDDQKRMIQNIANLSEYLLQIINEILDFSKLESGSYSLEQHDFDLDSMFESIAAALCSQ 667

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716
           + E N+  KV I D        D   L +I   + +NA+ F+  G+ +    +L  ++D 
Sbjct: 668 VQEKNVEFKVLIEDDVPVHLRGDGYSLKRILVNLTANAVKFTDAGNVILRASLLNRSKDR 727

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            + +F V + G  +P  + +++F  F        RR  G GLGL+I +S + + GGH+ +
Sbjct: 728 LEILFVVFDTGVGVPAAIQETIFEPFTQAEGGFSRRYGGTGLGLAICKSLVEMMGGHIWM 787

Query: 775 SSSDEGVTTINCRIP 789
            S+    ++   RIP
Sbjct: 788 ESTPGEGSSFFVRIP 802


>gi|310642322|ref|YP_003947080.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309247272|gb|ADO56839.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 476

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622
           + ++IK+ F+  +S+ELR+PLT+I G+++ L +   G  + ++++  ++ IS  +  L+ 
Sbjct: 237 RTNQIKDDFISSISHELRTPLTSIKGWSETLNS---GGYDPEETKIGMQIISKETDRLIG 293

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV +ILD + ++   MKL   T+ L +LL E+  ++  K     I++++ S+        
Sbjct: 294 LVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMKQIKLQLDSEETAYLVHG 353

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+F  I+ NA+ FS + S + L   R  G+   SV++ G  I E+    V +RF
Sbjct: 354 DGNRLKQVFLNIVDNAIKFSHESSIIYLSLQRVKGNIEISVQDTGIGISEENLARVRDRF 413

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               H  Q  G GLGL+I + F+  H G + I S     TTI   +P+
Sbjct: 414 FQVDH--QNGGTGLGLAISQQFVERHHGQMLIRSELGAGTTITVSLPA 459


>gi|53723264|ref|YP_112249.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei K96243]
 gi|52213678|emb|CAH39732.1| putative sensor kinase/response regulator fusion protein
           [Burkholderia pseudomallei K96243]
          Length = 771

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 12/230 (5%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           L    +A R+AD    +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++
Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  L  +V DILD +++  G ++L+   + L  ++N+V  ++      + I + V
Sbjct: 435 AIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV 494

Query: 672 ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +  LG+ +   D +RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  
Sbjct: 495 --ECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQG 552

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I  +    VF  F     A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 553 ISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|327192167|gb|EGE59140.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CNPAF512]
          Length = 1262

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + 
Sbjct: 1005 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1064

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Y+EY   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++E    +  
Sbjct: 1065 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1122

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  + + NG  
Sbjct: 1123 QANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1182

Query: 720  IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  V++ G  +     D     F +  S   R +  G GLGL + ++ ++ +    SI+S
Sbjct: 1183 VLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINS 1242

Query: 777  SDEGVTTINCRIPSK 791
            +    T +    PS+
Sbjct: 1243 APNEGTLVEITFPSQ 1257


>gi|288957737|ref|YP_003448078.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910045|dbj|BAI71534.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 767

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 3/229 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+ ++S+ELR+PL  IIGF ++L +   G++N +Q   +  I  S   LL++V
Sbjct: 511 ANRAKTEFLANMSHELRTPLNAIIGFAEVLSSEFFGTVNERQKSCITDIHDSGRHLLDIV 570

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N +LD++ ++ G   L+  ++  ++ + +    +  +     I I       +     DR
Sbjct: 571 NAVLDMSKLEFGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNEVTAAIALLWVDR 630

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           +   Q+   +LSNA+ F+  G  + + A  + +G F  +V + G  IP      +F  F 
Sbjct: 631 RAFKQVILNLLSNAVKFTPDGGQITVSAGLEADGGFRLTVADTGIGIPAAFMADLFQPFR 690

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +   RR  G GLGLSI ++FI+LHGG +S  S     T++  R+P+
Sbjct: 691 QAENTANRRYEGTGLGLSISKNFIDLHGGTLSCQSGLGAGTSMTVRLPA 739


>gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1486

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 125/223 (56%), Gaps = 3/223 (1%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +KN  L +A  +K+ F+ ++S+ELR+PL  I+G T+ L+    G +N +Q + ++ I  +
Sbjct: 1101 QKNAELDRATRLKDEFLANMSHELRTPLNAILGMTEGLQDEIFGQINERQRKSLKIIEQA 1160

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL L+NDILD++ +++G ++L+ ++  +  L       +  +  +  I++       
Sbjct: 1161 GNHLLELINDILDVSKIESGQLELHCTSTEIIPLCQSSLAFVKQQAVKKRIQLDFNISSN 1220

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735
            +     D +R+ Q+   +L+NA+ F+ +G  V L+  +   + + F+VK+ G  I  +  
Sbjct: 1221 ILMLTLDERRIRQVIINLLNNAVKFTPEGGKVGLEVVQIGENTVRFAVKDTGIGIAAENI 1280

Query: 736  KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +F  F  + +A   Q  G GLGL++V+  ++LHGG VS++S
Sbjct: 1281 PKLFQPFMQIDSALNRQYTGTGLGLALVKRLVDLHGGEVSVTS 1323


>gi|331008579|gb|EGH88635.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 1170

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|218245995|ref|YP_002371366.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166473|gb|ACK65210.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1193

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 138/279 (49%), Gaps = 33/279 (11%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T    A+ AL +  E+   A+  K+ F+ ++S+E+R+P+  I+GF +LL+    G
Sbjct: 670 TITDITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----G 725

Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            ++  +S+ Y+  I++S  ILL L+NDILDL+ +D+G +++NY  I L  L+ E+ Q   
Sbjct: 726 IIDDPRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFV 785

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LK 711
               +  + + + I+D    + + D  RL QI   +L NA+ F+ +G+  I       L 
Sbjct: 786 EDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHEGAVKIAVKATKKLP 845

Query: 712 AARDNGDFIF------------------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
             R+  D ++                  SV++ G  I  +    +F+ F  +  +  R+ 
Sbjct: 846 ENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKY 905

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGL+I      + GG + + S     +T     P+
Sbjct: 906 GGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFPN 944


>gi|160890817|ref|ZP_02071820.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
 gi|156859816|gb|EDO53247.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
          Length = 1034

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 133/248 (53%), Gaps = 8/248 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  R E AL    E  +++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++     +
Sbjct: 649 ITERKRQEEALIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATE---NET 705

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +++  I  ++ +LL LV++ILDL+ ++A  ++ NY  + LN L  +V+ ++  ++ +
Sbjct: 706 ERKEFISIIETNNQLLLQLVSNILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRL-Q 764

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + ++ + +  +     +  RL Q+   +L NA  F+ KG  +     R   +  F VK
Sbjct: 765 TGVALQFVPEVPVCYVQTEHNRLSQVLINLLVNAAKFTEKGEIMFGYKIRGE-ELYFYVK 823

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TT 783
           + G  I  +  K +F RF       Q  G GLGLSI ++ +    G + + S  EG  +T
Sbjct: 824 DTGIGISLENQKKIFERFTKVNTFIQ--GTGLGLSICKNIVTKMKGRIGVESEGEGKGST 881

Query: 784 INCRIPSK 791
               IP K
Sbjct: 882 FWFTIPYK 889


>gi|39935041|ref|NP_947317.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris CGA009]
 gi|39648892|emb|CAE27413.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
          Length = 532

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---I 613
           E       A+  K+ F+  +S+ELR+PL  I+GF++++K+   G+       Y +Y   I
Sbjct: 253 EARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPAYKDYSADI 310

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LLNL+N+ILDL+ ++AG  +LN   I L  ++ +    +  +     I I  + 
Sbjct: 311 HNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRATSRGITIHEVF 370

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPE 732
           +  +     D + + Q+   +LSNA+ F+ +G  + LKA    +G    SVK+ GS IPE
Sbjct: 371 EQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLSVKDTGSGIPE 430

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +    V   F   SN+ +   +G GLGL I +S I++HGG  ++ S
Sbjct: 431 EEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 476


>gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 892

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 125/251 (49%), Gaps = 5/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+ +  E+AL    E   +A + K+ F+ ++S+E+R+P+  I+G   LL+      LN
Sbjct: 506 DLTEQIDHEQALGHSKELAEQASQAKSEFLANMSHEIRTPMNGILGTLQLLQEQ---PLN 562

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K  +Y++    S+  L  ++NDILD + ++AG + L +      +L++ ++  +  +  
Sbjct: 563 EKSKEYLKKSLYSTRALTTIINDILDFSKIEAGKLSLEHKPFDFFELIHHLESDLGVQAT 622

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + NI +K + D +   +V D  RL Q+F  ++SNA+ F+S+G   +     D       +
Sbjct: 623 DKNIYLKFVIDIEHKHWVGDPVRLRQVFLNLISNAIKFTSQGGVTVTFRLTDESRICCCI 682

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I E     +F RF        R   G GLGL I +S I L  G + ++S     
Sbjct: 683 SDTGIGISEQAIDRLFERFEQAEQSTTREYGGTGLGLPITKSLIGLMNGEIKVTSQLGSG 742

Query: 782 TTINCRIPSKE 792
           +     +P K+
Sbjct: 743 SQFYVYLPLKQ 753


>gi|289662747|ref|ZP_06484328.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 291

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++S
Sbjct: 44  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +V+D+LDLA ++AG + ++     L DL   ++  +   + +    + V  D
Sbjct: 104 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALR-GMFRPLTDTGKTMLVFDD 162

Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  I  +
Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIAAE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +++F  FV      Q+R  G GLGLSI + F  L GG V ++S
Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGVNS 267


>gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 786

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 12/233 (5%)

Query: 553 RALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA  +  E+L KA   D  K+ F+ ++S+E+R+P+  ++G  +LL  ++L     +Q  +
Sbjct: 220 RAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTEL---TPRQKTF 276

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S   LL ++NDILD + ++AG + L+ +   L + + +V   ++ ++ E N+ +
Sbjct: 277 TDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSARVAEKNLEL 336

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKN 725
            V  D +L +  V D  R  QI + ++ NA+ F+ KG  +I        D +     V++
Sbjct: 337 IVRVDPRLPAHVVGDAGRFRQIVTNLVGNAVKFTEKGHVLIDVGGETVNDVVQLRLRVED 396

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  IP +  ++VF +F        RR  G GLGL+I    ++L  G + + S
Sbjct: 397 TGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVES 449


>gi|330816290|ref|YP_004359995.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3]
 gi|327368683|gb|AEA60039.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3]
          Length = 779

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 9/238 (3%)

Query: 559 NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +A R+AD    +K+  +  VS+ELR+PL  I G+ ++++    G+L   Q Q ++ I  
Sbjct: 385 RDARRQADTSNRLKDELLAIVSHELRTPLNVIYGWVEVMRNPIDGAL---QRQAIDAIDR 441

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  L  +V DILD +++  G ++L+   + L  ++ +V  S  T    + I ++     
Sbjct: 442 SARSLSRMVADILDASSLATGKLRLDPMPVDLVRVVGDVAGSFGTTAGHDGITLETHCAL 501

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D +RL Q+ S +LSNA  F+ +G  V +   RD    + +V + G  +  D  
Sbjct: 502 EACVVSGDAERLKQMLSNLLSNAFKFTPRGGRVTIGLTRDEARVLLTVTDTGQGVVADFL 561

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPS 790
             VF  F    N+    +RG+GLGLSIV     LHGG V ++S+   + TT    +P+
Sbjct: 562 PHVFEAFRRAENSPASPKRGLGLGLSIVRHIAELHGGAVRVASAGRDLGTTFEVALPA 619


>gi|257487872|ref|ZP_05641913.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 1170

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
 gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
          Length = 1032

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 521 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 580

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 581 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 637

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 638 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 697

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 698 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 757

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 758 IEIDSLPDFGTTVTVALPLRE 778


>gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9]
          Length = 923

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 412 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 471

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 472 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 528

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 529 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 588

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 589 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 648

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 649 IEIDSLPDFGTTVTVALPLRE 669


>gi|260893731|ref|YP_003239828.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865872|gb|ACX52978.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 546

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 133/249 (53%), Gaps = 11/249 (4%)

Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER   L + NE L +A++ K+  + +VS+ELR+PLT ++ +T++L     G L  +Q +
Sbjct: 299 AERTKELQKANEELARANQFKSEILANVSHELRTPLTAVLAYTEMLLDPTTGPLTPEQRE 358

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E I+ SS  LL  + D+L +A ++AG  +L Y    + +++ EV   +     +   R
Sbjct: 359 CLENIADSSKELLLEITDLLQMARLEAGRKELFYEPFDMAEVVQEVFSLLGPLARKK--R 416

Query: 669 IKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF-SV 723
           IK+    + G +  +ADR ++  I + ++SNA+ F+S+G  V +K +   D   ++   V
Sbjct: 417 IKLCGPEERGEWWVLADRAKVKHILTNLVSNAIKFTSEGGKVTVKLSYGFDTTRYMLVKV 476

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I     + +F +F  +    Q  G GLGL++V   + LHGG V + S     ++
Sbjct: 477 TDTGVGIDPAEQEVIFEKFYRSKKHSQ--GTGLGLTLVRELVQLHGGRVWVESIPGQGSS 534

Query: 784 INCRIPSKE 792
               +P KE
Sbjct: 535 FYFTLPLKE 543


>gi|254443566|ref|ZP_05057042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257874|gb|EDY82182.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 730

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 127/231 (54%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + +++ K+ F+ ++S+ELR+PL +I+  T  L     G LN+KQ + +E +S SS  L +
Sbjct: 358 QSSNKAKSYFLSNISHELRTPLNSIVSLTQALLEGTFGDLNAKQHENLEIVSESSKHLQS 417

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILDL+ ++ G M L ++   + D+     + I  +    N+R  +  + +L +   
Sbjct: 418 LINDILDLSKIELGKMTLKFAQAGIGDIARSSIRMIEQEASLKNVRCILEINTELENIEV 477

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFN 740
           D +RL QI   +L NA+ F+   + V L+     +N   +F+V ++G  I ++    +F+
Sbjct: 478 DAKRLRQILLNLLVNAVKFTKSNTDVTLQIEENSENESVVFNVIDHGIGIDQNDFSKIFS 537

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F  + ++      G GLGL+I   F+ LHGG + ++S+ +  +T    +P
Sbjct: 538 PFTQLDDSLSRHYEGTGLGLAIASKFVELHGGGLRVASTPDLGSTFTISLP 588


>gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 922

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 411 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 470

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 471 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 527

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 528 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 587

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 588 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 647

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 648 IEIDSLPDFGTTVTVALPLRE 668


>gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 989

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 126/249 (50%), Gaps = 9/249 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTE----KNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + QT    V + D +   +AL E      +A   A   K+ F+ ++S+ELR+PL  I+G+
Sbjct: 503 SGQTAHVIVIIQD-ISERKALEETVRVAKDAAEAASRAKDQFLANISHELRTPLNGILGY 561

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             +L+      L+++Q   V  I  S   LL L+NDILD A + AG ++L    + L   
Sbjct: 562 AQILQRDV--RLDTRQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVPLRGF 619

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L  + + +A +  +  + +  ++   L + V  D +RL Q+   +L+NA+ F+ +G   +
Sbjct: 620 LETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVQFTDRGEVTL 679

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLH 768
             +    G   F V++ G  +  D  +++F  F  +  H  +  G GLGL+I +  + + 
Sbjct: 680 SVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQAGDHTRRSGGAGLGLAISQQLVRMM 739

Query: 769 GGHVSISSS 777
           GG + ++SS
Sbjct: 740 GGEIEVTSS 748


>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
 gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
          Length = 1040

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 135/273 (49%), Gaps = 26/273 (9%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL----RKADEI----------KNSF 572
           E  ++PL   +T+    N+TD    E  L   N  L    RKA ++          K+ F
Sbjct: 460 EIRVVPLGTDKTLNIVRNMTDQKETENKLLRTNRKLENASRKAKKLAEQAQEASKAKSEF 519

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  +IG T LL  +    L  +Q +Y   I++S+  LL+L+NDILD++ 
Sbjct: 520 LANISHEIRTPMNGVIGMTGLLLET---DLTPQQHRYAGTIASSAQSLLDLINDILDVSK 576

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIF 691
           ++AG + L      L +L+++   S A +  + N+  +  I  G       D  RL QI 
Sbjct: 577 IEAGKLTLEILDFDLQELMDDFAASFAIQAEQKNLEFLCSIEPGIPTRLTGDPGRLRQIL 636

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFV---S 744
             I  NA+ F+SKG   I      + D      F +++ G  I ++   ++F +F    +
Sbjct: 637 MNIAGNAVKFTSKGEIAIYVTLDSDCDDQVVLRFCIRDTGIGIAKEKIDTLFEKFTQIDA 696

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +A R Q  G GLGLSI +  + L  G + + S+
Sbjct: 697 SATR-QYGGTGLGLSIAKDLVELMQGSIGVEST 728


>gi|330985282|gb|EGH83385.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 1170

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|289646781|ref|ZP_06478124.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 1172

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
 gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
          Length = 1014

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 619

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 620 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760


>gi|83943090|ref|ZP_00955550.1| response regulator receiver protein [Sulfitobacter sp. EE-36]
 gi|83846098|gb|EAP83975.1| response regulator receiver protein [Sulfitobacter sp. EE-36]
          Length = 685

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 170/382 (44%), Gaps = 38/382 (9%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-CSRYYNESD 495
            E ID + EG   F    R+ + N  +R       + + PG  +  +     +R  + S 
Sbjct: 302 AEAIDAIDEGFIAFDDKERVMVVNQKYRDYHPQIADLIVPGATMGELVVNWANRTESLSG 361

Query: 496 GWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                A +       R   Q  L+ + +D+ L+ +    P+  T+  + +VT   RA+  
Sbjct: 362 SKSKQAWVRERLQRFRNPGQAFLQDIGNDNWLKVTEAKTPHGYTVGIWTDVTAEKRAQ-- 419

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK--------LGSLNSKQ 606
                EA   AD  K  F+ +VS+ELR+PLT I G    ++ S         + +L +  
Sbjct: 420 -----EAAEAADREKTEFLNNVSHELRTPLTVIFGRASFMRHSDKMPQAQRLMSALTADG 474

Query: 607 S-------QYVEY----------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           S         +EY          I+ SS  ++ LV D+LD   V  G ++L+ +   L++
Sbjct: 475 SGCPKSAAAAIEYQKFITDQGAGIAESSQHMIRLVEDLLDWTKVSRGQLELDMAPTQLDE 534

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +   V Q +        + +    DG   + VAD+ R+ QI   +++NA+ F+S+G  + 
Sbjct: 535 IARTVTQELQPAAEAKGLTLTYAGDGPAAT-VADKVRVKQILYNLITNAIKFTSEGK-IH 592

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           L       + +FSV + G+ I E+    VF RF  V  +   Q  G+GLGL+I E    L
Sbjct: 593 LSMLHSADEIVFSVTDTGNGIAEEDASRVFQRFQQVDGSMTRQNGGLGLGLAISEQLAEL 652

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +S+ S     +T +  +P
Sbjct: 653 HGGSLSLESKLGVGSTFSLTLP 674


>gi|313205098|ref|YP_004043755.1| pas/pac sensor hybrid histidine kinase [Paludibacter
           propionicigenes WB4]
 gi|312444414|gb|ADQ80770.1| PAS/PAC sensor hybrid histidine kinase [Paludibacter
           propionicigenes WB4]
          Length = 912

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 146/288 (50%), Gaps = 19/288 (6%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           + D+R ++QG + +  D   +  I    N    + F  +   + AE A T+   + + A+
Sbjct: 345 YKDDRGNVQGVVVVARDITDQKKIETQLNEA--IVFAEMATEI-AEIAKTKAESSTQIAE 401

Query: 567 ---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
              + K  F+ ++S+E+R+P+  I+GFT +L  S+L    +KQ +Y+  I  S   L+ L
Sbjct: 402 TAVKAKQQFLSNMSHEIRTPMNAIVGFTKVLLKSEL---TAKQKEYLSAIKMSGDALIVL 458

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682
           +NDILDLA VDAG M        +   ++ +     TK+ E N+++ V  D  +    V 
Sbjct: 459 INDILDLAKVDAGKMVFEKIPFKMELSISAMLHLFETKILEKNLKLVVDYDKTIPDVLVG 518

Query: 683 DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL QI   ++SNA+ F+ KG    S  +L    D+    FS+K+ G  I E+    +
Sbjct: 519 DPVRLHQIILNLMSNAVKFTGKGKIYVSVRLLSNNDDSASVQFSIKDTGIGISEEKIGKI 578

Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           F  F   A  G  R   G GLGL+IV+  +   GG + ++S  +EG T
Sbjct: 579 FENF-QQASSGTSRLYGGTGLGLAIVKQLVESQGGSIHVTSEINEGST 625


>gi|298487166|ref|ZP_07005215.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158190|gb|EFH99261.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1172

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1201

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 559 NEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +E  +KADE+      K+ F+ ++S+ELR+PL +I+  + LL  +   +L   Q +Y   
Sbjct: 514 DEIQKKADELELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENNEATLTPDQVEYARV 573

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LL L+++ILDL+ ++AG MKL+Y  + + ++ +E++        E  +   + 
Sbjct: 574 IQSSGNGLLGLIDEILDLSKIEAGQMKLDYQDMSIAEITDELQSLFGLVAKEKGLDFAIT 633

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSS 729
               + + +  DR RL QI   +LSNA+ F+S G  S  I ++        F VK+ G  
Sbjct: 634 VKPDVPTVIETDRMRLGQILKNLLSNAIKFTSSGQVSLRIERSTSAASTLCFVVKDTGIG 693

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           IP +    VF  F       +R+  G GLGLSI      L GG +++SS
Sbjct: 694 IPPEKQPLVFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEITLSS 742


>gi|323699566|ref|ZP_08111478.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459498|gb|EGB15363.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 953

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 125/236 (52%), Gaps = 10/236 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V A R+  E + A  +A+  K+ F+ ++S+E+R+P++ I+G  +++ T+    L  +Q +
Sbjct: 427 VEANRSAEEASSAALEANMAKSMFLANMSHEIRTPISGILGMAEMMVTT---GLTEEQRE 483

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ I  +   LL+++NDILD++ ++AG M+L          L    +S   +   N + 
Sbjct: 484 HMDMIRDAGKSLLHIINDILDISKIEAGRMELKPRDFTFRSALETSVRSFGPQAELNGLV 543

Query: 669 IK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI--FSV 723
            +  ++D        D  RL Q+   ++ NAM F+ +G    ++   AR  G     F V
Sbjct: 544 FRHDVADDVPARLNGDPDRLGQVLWNLIGNAMKFTPRGLVELIVEVVARKEGRVCLQFKV 603

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           ++ G  IPED   +VF+ F    ++ R + +G GLGL+I    +N+ GG + + S+
Sbjct: 604 RDTGVGIPEDKLDAVFDSFTQADSSLRKKHQGTGLGLTISRQLVNMMGGEIGVESA 659


>gi|320328955|gb|EFW84954.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 1170

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|253702042|ref|YP_003023231.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776892|gb|ACT19473.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 718

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 15/233 (6%)

Query: 556 TEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           TE  EAL KA+     K+ F+ ++S+E+R+P+  +IG   LL  + L   +  Q  Y+E 
Sbjct: 200 TELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLAKLLMETPL---DEVQQGYMES 256

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  LL ++N+ILD++ V+AG++ L      L   L+   Q    +  +  +R+ + 
Sbjct: 257 LSDCAENLLTIINEILDVSKVEAGMITLEAVVFDLRRFLDRSLQPFVLRGQKKGVRVHLE 316

Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727
           +D  L    V D  RL Q+ + +L NA+ F+ +GS  +  A   +G+      FSV + G
Sbjct: 317 ADSGLPELMVGDPVRLRQVLANLLGNALKFTQQGSITLTAALTGSGENRVALKFSVADTG 376

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
             I  +  + +F +F S A     R   G GLGLSI +S + L GG +S+ S+
Sbjct: 377 IGIAAEAMEVIFEKF-SQADSSTTRLYGGTGLGLSISKSLVELMGGELSVQST 428


>gi|190890429|ref|YP_001976971.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190695708|gb|ACE89793.1| probable two-component sensor histidine kinase protein [Rhizobium
            etli CIAT 652]
          Length = 1257

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + 
Sbjct: 1000 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1059

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Y+EY   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++E    +  
Sbjct: 1060 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1117

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  + + NG  
Sbjct: 1118 QANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1177

Query: 720  IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  V++ G  +     D     F +  S   R +  G GLGL + ++ ++ +    SI+S
Sbjct: 1178 VLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINS 1237

Query: 777  SDEGVTTINCRIPSK 791
            +    T +    PS+
Sbjct: 1238 APNEGTLVEITFPSQ 1252


>gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
 gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
          Length = 925

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+L   + +Q  Y+  I  S+
Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLSTIQKSA 329

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LL ++N+ILD + ++AG + L      L DL+ +    +A   HE  +  + ++    
Sbjct: 330 ESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDT 389

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIP 731
                 D QRL QI + ++ NA+ F ++G TV ++A     + D      SV++ G  + 
Sbjct: 390 PVQLQGDPQRLKQILTNLVGNAIKF-TQGGTVAVRAMLEDESDDRAQLRISVQDTGIGLS 448

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           ED  +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 EDDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496


>gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 848

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 145/299 (48%), Gaps = 16/299 (5%)

Query: 501 AAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLPN---AQTMLTFVNVTDSVRAERALT 556
           A  + SF   R  ++ G +   S+   EY +    N   A   ++F  + D  R   +  
Sbjct: 548 AVWMASFLTRRITAVVGGIHRFSEQETEYRLPVQGNDEMASLAISFNQMAD--RVAESFV 605

Query: 557 EKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             +EA ++A+E   +K+ F+ ++S+ELR+PL  IIGF++L++     + + +  +  + I
Sbjct: 606 RLDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDE---AADDETRENADII 662

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS  LL LVN ILD+A ++AG M L+   + L  L+ E      +      I +    
Sbjct: 663 EKSSRHLLELVNSILDIAKIEAGAMTLSIQEVKLAPLVAEAAAVHQSAAQGKGITLSSRV 722

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            G   + + AD  RL QI   +LSNA+ F+  G  V L         +F V + G+ IPE
Sbjct: 723 AGDCPATIQADPLRLRQILHNLLSNAVKFTETGE-VALSVDLQPDHLVFKVSDTGAGIPE 781

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            M  ++F +F  V +       G GLGL++    + L GG + + S+    TT +  +P
Sbjct: 782 AMLHAIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGVIGVESTVGKGTTFHFTLP 840


>gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 91]
          Length = 927

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 532

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 533 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673


>gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 14]
          Length = 927

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 532

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 533 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673


>gi|320324583|gb|EFW80660.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 1170

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1043

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 136/266 (51%), Gaps = 13/266 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +++   +++T+  + E AL ++ E L +A+ +K+ F+  +S+ELR+PL  ++G+T LL++
Sbjct: 627 ESVAFILDLTERKQLEAALHQRAEELLQANRLKDEFLATLSHELRTPLNAMLGWTQLLRS 686

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K      K ++ +E I  ++  L  L+ D+LD++ +  G ++LN   + L  ++    +
Sbjct: 687 RKFD--EEKTARALETIDRNTKSLAALIEDLLDVSRIITGKLRLNLRLVDLVSVVEAAIE 744

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++       +I+I  + D ++     D  RL Q+   +LSNA+ F+  G  V +   R  
Sbjct: 745 TVIPAAQAKSIQIIPLLDERIERISGDSSRLQQVIWNLLSNAIKFTPNGGCVTIAIHRVG 804

Query: 717 ----GDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
               G+F     V + G  I  +    VF+RF S A     R   G+GLGL+IV   + L
Sbjct: 805 SELEGNFCAEIEVTDTGQGINPEFLPHVFDRF-SQADSTTTRSYSGLGLGLAIVRHLVEL 863

Query: 768 HGGHVSISSSDEGV-TTINCRIPSKE 792
           HGG V   S   G  +    R+P  E
Sbjct: 864 HGGTVKADSQGSGKGSAFTVRLPLPE 889


>gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2476

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 127/256 (49%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            RA  +L EK E L    + K+ F+ ++S+ELR+PL +++    LL  +K G+L++KQ +Y
Sbjct: 1753 RARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNSLLILAKLLSDNKDGNLSTKQVEY 1812

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I AS   LL+L+N+ILDL+ V+AG M++    IVL +L   +++S      +  +  
Sbjct: 1813 ANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFIERSFLPVAEQKGLDF 1872

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI------- 720
             V +  G       D QRL Q+   +LSNA  F+ +GS  + +K A     F        
Sbjct: 1873 AVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDEGSVQLKVKLAEPGTHFDHEVLRRS 1932

Query: 721  -----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 FSV + G  I  D  + +F  F        R+  G GLGLSI      L GG + 
Sbjct: 1933 RYVLGFSVVDTGIGIARDKQRLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIQ 1992

Query: 774  ISSSDEGVTTINCRIP 789
            ++S     +T    +P
Sbjct: 1993 VASEPGRGSTFTLYLP 2008


>gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei BCC215]
          Length = 927

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 532

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 533 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673


>gi|154253689|ref|YP_001414513.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157639|gb|ABS64856.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 377

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 11/235 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLN 622
           +A+E K++F+ ++S+ELR+PL  IIGF+D+++  + GS+ NS+   Y + I+ S   LL+
Sbjct: 126 RANEAKSNFLANMSHELRTPLNAIIGFSDIIRFQRFGSVGNSRYQDYAKDINESGIHLLS 185

Query: 623 LVNDILDLATVDAGIMKL----NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           ++NDILDLA +DAG   +     +S     D    + +S+A +     I +   +     
Sbjct: 186 IINDILDLAKIDAGHGTMEQEAEFSVRSAIDCAERMVRSLAER---QEISLSTAAAETSA 242

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKS 737
             V   + + Q+   +LSNA+ F+ +G +V + A  R NG+ + S+ + G  +  D  K 
Sbjct: 243 YLVGVERMVRQVLINVLSNAIKFTERGGSVTVAAEHRPNGNLVVSISDTGIGMSPDEVKV 302

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               F  +     R+  G GLGL + ++ +++HGG + + S     TT+    PS
Sbjct: 303 ALTPFGQSGSALSRKHPGTGLGLPLAKAMMDMHGGRLMVRSMVGKGTTVTLVFPS 357


>gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1989

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 16/243 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A R+L EK E L      K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 1235 QARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNIENNLTPKQVEY 1294

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I +S + LL L+NDILDLA +++G M +    + L DL +++++S     H+  +  
Sbjct: 1295 AATIYSSGSDLLGLINDILDLAKIESGTMSIEVEQMQLEDLRHQIERSFRQIAHDKGLEF 1354

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAAR----DN-----G 717
             +I D +L S +  D +RL Q+   +LSNA  F++KG  S  +  A R    DN      
Sbjct: 1355 SIIFDPRLPSSIYTDSKRLQQVLKNLLSNAFKFTAKGQVSLSLEPAIRGWSLDNEILNSA 1414

Query: 718  DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            + +  F+V + G  I  +  K +F  F        R+  G GLGLSI      L GG ++
Sbjct: 1415 ELVLAFAVTDTGIGIAPEKQKLIFEAFQQADGTTSRQYGGTGLGLSISREIARLLGGEIT 1474

Query: 774  ISS 776
            + S
Sbjct: 1475 VIS 1477


>gi|171320942|ref|ZP_02909936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171093807|gb|EDT38944.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 594

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 121/234 (51%), Gaps = 8/234 (3%)

Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +RA+R+L    +A  +AD    +K+  +  VS+ELR+PL  I G+ ++L+ ++  +L   
Sbjct: 241 LRAQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDAL--- 297

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q Q ++ I  S+  L  +V DILD +++  G ++++   + +  L ++   +  T     
Sbjct: 298 QLQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSA 357

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I ++            D +RL Q+ + ++SNA+ F+  G  V +  +RD+   +  V +
Sbjct: 358 GIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVAD 417

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G  IP      VF+ F    ++    RRG+GLGLSIV     LHGG V + S+
Sbjct: 418 TGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGQVRVESA 471


>gi|92118136|ref|YP_577865.1| multi-sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
 gi|91801030|gb|ABE63405.1| multi-sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
          Length = 614

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 126/249 (50%), Gaps = 3/249 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E AL        +AD  K  F+  +S+ELR+PL  IIGF++++      SL+
Sbjct: 325 DITERKHQEHALDLALTTAERADAAKTRFLATMSHELRTPLNAIIGFSEMMVQEDALSLD 384

Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++ +Y + I+ S   LL++VN ILD++ +++G  ++        ++L      +A K 
Sbjct: 385 AARRKEYAQLINDSGQHLLSVVNSILDISKMESGNFEILPEPFAPREVLLNSSNLLALKA 444

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +N I +       L     D +   QI   ++SNA+ F+ +G  V + A  +    +  
Sbjct: 445 RDNGIELVTRVPEDLPQITGDPRAFRQIVLNLVSNAVKFTERGGRVTISARVEGSRMVLR 504

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V +NG  I ++  K + + F       QRR  G GLGLSIV+S + LH G + + S  E 
Sbjct: 505 VMDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVALHRGEIDVQSKVEE 564

Query: 781 VTTINCRIP 789
            TT+   +P
Sbjct: 565 GTTVTVMLP 573


>gi|117926521|ref|YP_867138.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610277|gb|ABK45732.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1027

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 129/239 (53%), Gaps = 7/239 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F+++T+ ++A++ L E  +A  +A + K+ F+  +S+E+R+P+  +IG +D+L  +    
Sbjct: 614 FLDITEQMQAQQVLEEARQAAEEASQAKSDFLASMSHEIRTPMNAVIGLSDVLAET---P 670

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN +Q  YV  +  +S  LL+L+N ILDL+ +++G  +L      L+D+ + V   +  +
Sbjct: 671 LNPEQQHYVTTLQRASHTLLDLINAILDLSKIESGRFELIERPFDLSDMAHGVCSVLRVQ 730

Query: 662 MHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +  + + +  D  L  F V D  RL QI   ++ NA+ F+ +G   +   ARD    +
Sbjct: 731 AEQKGLSLALEMDETLPPFVVGDSPRLRQILINLIGNAIKFTEQGFVKVSVQARDQQRTL 790

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F + ++G  I     + +F +F        RR  G GLGL+I +  + L GGH+ + S
Sbjct: 791 WFGIADSGVGIAPTQVEQIFEKFTQVDSSVVRRFAGSGLGLAISKQLVGLMGGHIGVES 849


>gi|298243490|ref|ZP_06967297.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556544|gb|EFH90408.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 403

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 165/342 (48%), Gaps = 15/342 (4%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           + H  + + V   D R++ SNPA R + +    +  PGT  +       +  N  +    
Sbjct: 45  MTHSPDALLVLDKDFRLRESNPAAREMLRLPVGK--PGTLWKCREVLRCKNLNRMELCGT 102

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            +  +     + + LQ   ELL  +  E          T +T +++     A  AL + +
Sbjct: 103 SSCPLARVLQQDEPLQNE-ELLVGAKEEI----FCEVSTSVTPIHIAAEPYAVWALRDLS 157

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            AL+ A++++++FV  VS+ELR+PL ++ GF +LL    +G LN +Q  Y+ Y       
Sbjct: 158 -ALKVANQVRSNFVSMVSHELRTPLNSVHGFIELLWQGHMGELNDEQRLYLGYAQEGVQQ 216

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKL 677
           L+++V DIL +   D G  +     + L +L+  V QS+  +  +  +   ++++ +  L
Sbjct: 217 LISIVEDILFMTRSDLGQFETKQQGVQLLELVRLVTQSLQPQAVKAGVALVLEIVPETPL 276

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736
                D QR+ Q+ + ++SNA+ ++  G +V + A+  +  F + SV + G  I  +   
Sbjct: 277 --LYVDPQRIKQVLNNLISNAIKYTPPGGSVTITASVHDARFQMISVTDTGYGIQVEDRP 334

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F RF  + H  Q +  G GLGLSI    +  HGG +S  +
Sbjct: 335 HIFERFYQSNHSQQSKMGGYGLGLSIARLIVEQHGGTISFDT 376


>gi|297569592|ref|YP_003690936.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925507|gb|ADH86317.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 807

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 29/273 (10%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADE---------------------IKNSFVQHVSYE 579
           T + ++   +AE  L ++NE L +A+                       K+ F+ H+S+E
Sbjct: 253 TCLEISRRKQAEAELEQRNEELTRANHQLAASNRRAAVLAAEAEAANRAKSDFLAHMSHE 312

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  +IG T LL     G L+ +Q  Y   I AS   LL ++NDILDLA ++AG ++
Sbjct: 313 IRTPMNGVIGMTALLLA---GDLDEQQRHYAGVIKASGEALLRIINDILDLAKIEAGRLE 369

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
           L      L  LL E+   +  +     + +K      L   +  D  RL QI   +L NA
Sbjct: 370 LVSRDFSLPALLAEIFTLLQPEAAAKGLALKEQVAADLPPRLRGDDVRLRQILLNLLGNA 429

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           + F+  G   +  +     +  FSV++ G  +P ++ + +F  F       +RR  G GL
Sbjct: 430 IKFTDHGEVEL--SVSGQHEICFSVRDTGPGVPPELQQQIFAPFEQAGAADRRRPAGTGL 487

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I      L  G + + S+     T +C +P
Sbjct: 488 GLAICRRLAQLMEGSLRVESTPGAGATFHCVLP 520


>gi|53712805|ref|YP_098797.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215670|dbj|BAD48263.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 870

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  LT   +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G    +   ++E
Sbjct: 632 EEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIE 690

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +  +LL L+NDILDL+ +++G M   ++   L  L+  V  S    M      +  
Sbjct: 691 TINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLK 750

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + +      V D  RL Q+ + +++NA+ F+++GS        + G     V++ G  I 
Sbjct: 751 LPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGIS 810

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  + +F RF       Q  G GLGLSI ++ +    G ++++S +   T    R+P
Sbjct: 811 EDGLRHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGMITVASEEGHGTRFTVRLP 866


>gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
 gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
          Length = 988

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 477 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 536

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 537 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 593

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 594 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 653

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 654 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 713

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 714 IEIDSLPDFGTTVTVALPLRE 734


>gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1]
          Length = 1149

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 131/245 (53%), Gaps = 3/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q ++
Sbjct: 462 QAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSEEQVKF 521

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I ++   LLNL+NDILD+A V+AG +++   T  +  L+  ++           +  
Sbjct: 522 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAF 581

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +V  + ++  +   DRQRL QI   +LSNA+ F+ +G   +  + +     +F+V++ G 
Sbjct: 582 EVKVEPQVPVTLFTDRQRLEQILKNLLSNALKFTERGQVSMNVSFQAGSGIVFAVRDTGI 641

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D  +++F  F        RR  G GLGLSI     +L GG +++ SS    +  + 
Sbjct: 642 GIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFSL 701

Query: 787 RIPSK 791
            +P +
Sbjct: 702 ILPER 706


>gi|224538905|ref|ZP_03679444.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519483|gb|EEF88588.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 652

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 138/249 (55%), Gaps = 11/249 (4%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P  + + M    ++ D V+    L E  +   +AD +K+ F+ ++S+E+R+PL  I+G
Sbjct: 259 IAPFEDNKVMALIHDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 318

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++++    L     ++++Y+  I  +S +LL L+NDILDL+ +++G  ++N+  + +  
Sbjct: 319 FSEIIA---LTEDEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMTG 375

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708
           L++EV++    KM +  IR+ V+   +    + DR R+ Q+    LSNA+  + +G+ T+
Sbjct: 376 LIDEVEKVHRLKM-KTGIRLNVMRPDEEIWIMVDRNRITQVLFNFLSNAIKNTHEGAITL 434

Query: 709 ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            L+     G+++   V + G  I ++    +FNRF       Q  G GLGL I +S +  
Sbjct: 435 GLEVC---GEWLKVYVTDTGCGIAKEKLPLIFNRFEKLNDFVQ--GTGLGLPICQSIVER 489

Query: 768 HGGHVSISS 776
            GG +S+ S
Sbjct: 490 LGGKISVES 498


>gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112]
          Length = 927

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 532

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 533 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673


>gi|71735952|ref|YP_274795.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556505|gb|AAZ35716.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 1170

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFKPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 1032

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 521 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 580

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 581 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 637

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 638 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 697

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 698 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 757

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 758 IEIDSLPDFGTTVTVALPLRE 778


>gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris
           marina MBIC11017]
          Length = 834

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 125/246 (50%), Gaps = 12/246 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    +   +A+  K+ F+  +S+ELR+PL  I+GF+ L+   +  +++++Q   ++ I
Sbjct: 356 ALEAARQKADQANRAKSEFLASMSHELRTPLNAILGFSQLMSEDQ--AISTQQQNTLQII 413

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + S   LL L+ND+LD++ ++AG   LN +   L+ LL  +      K     +++ +  
Sbjct: 414 NRSGEHLLELINDVLDMSKIEAGRTTLNPADFNLHGLLQSLYDMFNLKAQSKGLKLALKL 473

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGD----FIFSVKNNG 727
           D  L  F+  D  +L Q+   ++ NA+ F+  G   I    A   GD      F+V+++G
Sbjct: 474 DDHLPQFIHGDESKLRQVLINLIGNAIKFTEAGEVSITAGMAEQTGDGELSLTFAVEDSG 533

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT---T 783
             I  D  + +F+ F+       ++G GLGL+I   F+ L  G +S+ S    G     T
Sbjct: 534 PGIAPDEVERIFDPFIQAKSSQAQQGTGLGLAISAQFVRLMKGDISVCSKLSRGSIFRFT 593

Query: 784 INCRIP 789
           I C+ P
Sbjct: 594 IGCQTP 599


>gi|90419109|ref|ZP_01227020.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337189|gb|EAS50894.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 653

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 4/234 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASST 618
           +A  ++   K+ F+  VS+ELR+PL  IIGF+D+L     G   S +Q +YV  I  S  
Sbjct: 382 DAANQSSAAKSQFLAAVSHELRTPLNAIIGFSDILDQEFFGGFESDRQKEYVGLIRQSGQ 441

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL++VN +LD++ ++AG  +L      L + ++     +  +    ++R+ V    +  
Sbjct: 442 HLLSVVNSLLDVSKIEAGRYELVPEAFGLGEAMDLAVDVVREEARRKDLRLDVRPGCRDE 501

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              ADR+   QI   +LSNA+ F+  G  V L++ R      FSV + G  I E   + +
Sbjct: 502 EITADRRACHQILLNLLSNALKFTEVG-VVTLESRRVGAMVEFSVSDTGIGIAESDIERL 560

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              FV  +    RR  G GLGLS+V+    LHGG ++I S     T +  R+P+
Sbjct: 561 GRPFVQVSSGTTRRYQGTGLGLSLVKGLAELHGGDMTIRSQPGVGTMVTVRLPA 614


>gi|254429445|ref|ZP_05043152.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195614|gb|EDX90573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 782

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 16/247 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ +TE+   L  A   ++ F+  +S+E+R+PL  IIG  D+LK + L   + +Q   + 
Sbjct: 383 EQRVTERTGELNAALSARSEFLAVMSHEIRTPLNGIIGTVDMLKGTPL---DDEQRHNLN 439

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRI 669
            I  S   LLNL+NDILD + ++AG M +  ++  L +L+NE       K  +H N + +
Sbjct: 440 VIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLINESLALFQHKAHVHSNTLTL 499

Query: 670 KV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF-IFSVK 724
           ++   + +  LG    D  RL QI   ++SNA+ F+  G+ TV ++   DN D+  F V 
Sbjct: 500 EIAPHVGERCLG----DPVRLRQILVNLISNAVKFTDNGTITVRVQRDPDNADYAFFEVH 555

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I E+  + +F+ F        RR  G GLGL+I    + + GG + + S  +  +
Sbjct: 556 DSGIGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSQPKQGS 615

Query: 783 TINCRIP 789
               R+P
Sbjct: 616 RFWFRLP 622


>gi|27375770|ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27348908|dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 743

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 9/251 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD    ERAL++  +    A+  K+ F+   S+E+R+PL  IIG   LL  +   +L 
Sbjct: 211 DVTDRTETERALSDARDQADAANRAKSRFLAMASHEIRTPLNGIIGMGGLLLDT---TLT 267

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y + +  S   L+ L+ ++LD + ++AG + L      L+ L+ E+ + +A +  
Sbjct: 268 PEQATYAKAVKTSGEALMALIEELLDYSKIEAGKLDLEQRPFALSTLIEEITELLAPRAQ 327

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI 720
              + I    D +L    V D  RL Q+   +  NA+ F++ G   ++     R N +  
Sbjct: 328 AKTLEIAAYVDERLPLEVVGDAARLRQVLLNLAGNAIKFTASGGVALIVEPGIRPN-EIS 386

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I  +  + +F  F     R  R   G GLGL+I E  +   GG ++++S  
Sbjct: 387 FLVRDTGIGIAAEAQQRIFREFEQADERVARTYGGTGLGLAISERIVKRMGGRITLASEP 446

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 447 GKGSTFEVAVP 457


>gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
 gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
          Length = 1014

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 619

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 620 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760


>gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
 gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
          Length = 1035

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 524 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 583

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 584 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 640

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 641 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 700

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 701 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 760

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 761 IEIDSLPDFGTTVTVALPLRE 781


>gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
          Length = 1271

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 134/261 (51%), Gaps = 12/261 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L  V+VT+  +A+R   +      KA + K+ F+ ++S+E+R+P+  I+GF ++L   
Sbjct: 509 VLLMVVDVTEVAKAKRQAEQALLVAEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQ 568

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+ +Q + V+ I      L++L+NDILDL+ +++G + +  ++  L  L++E    
Sbjct: 569 E---LSPQQQESVKIIQQCGEQLMDLINDILDLSKIESGKLVMEETSFSLRKLIHEAVNV 625

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------L 710
           I +K  E N+ +K+  +  L      D  R+ Q+   ++SNA  F+ +G   I      +
Sbjct: 626 IESKFLEQNVEMKIDIEQNLHDQLKGDPTRIRQVLYNLISNAAKFTHQGYVKISVAEESI 685

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
             A       F +++ G  IP++  K +F+ F        R+  G GLGL+I +S   L 
Sbjct: 686 SGADHQIKLRFCIEDTGIGIPKEKLKLIFDAFTQADGSTTRKYGGTGLGLTICKSLTQLM 745

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +++ S     +  +  IP
Sbjct: 746 GGEINVESQVNKGSIFSFYIP 766


>gi|315645559|ref|ZP_07898683.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315279037|gb|EFU42347.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 639

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 11/238 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++   D    +R + EK EA  K ++ K+ F+  +S+E+R+P+  +IG TDL+  ++   
Sbjct: 239 YIIAKDMTEQKRLIIEK-EAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE--- 294

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q  YV+ I  S T LLN++NDILD + +++G  +L   T  L   L+E    I  K
Sbjct: 295 LDEEQRDYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRIALSETMNMILPK 354

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718
             E NI +      ++   V  D  +L Q+   +LSNA+ F+  G+  I ++     G+ 
Sbjct: 355 ALEKNIEVTTSVASEVPDQVHGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCLNHEGNP 414

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
               FSV + G  +PE+    +F  F    H   R+  G GLGL+I +  + L GG +
Sbjct: 415 PLIQFSVVDTGIGVPEEKVAHLFEPFYQVDHYMTRKVEGTGLGLAICKKLVKLMGGDI 472


>gi|228985104|ref|ZP_04145271.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774591|gb|EEM22990.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 444

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   +E + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 212 HSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 329

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A +  G  +  VK+ G  I
Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVIEVKDEGMGI 386

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443


>gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei B7210]
          Length = 988

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 477 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 536

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 537 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 593

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 594 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 653

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 654 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 713

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 714 IEIDSLPDFGTTVTVALPLRE 734


>gi|87310159|ref|ZP_01092291.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
 gi|87287149|gb|EAQ79051.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
          Length = 845

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 7/242 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T +++TD VR    L E  E    A+  K+ F+ ++S+E+R+PL  I+GFTDLL    + 
Sbjct: 427 TQIDITDQVRRTEELIEAMETAESANHAKSQFLANMSHEIRTPLNGIMGFTDLL-LYDIE 485

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           S  + + +Y+E + +S   LL L+N+ILDL+ +++G + +         +L +V   +  
Sbjct: 486 STEADRREYLETVRSSGEHLLALINEILDLSKIESGQLLIEKFPCSPQQILTDVISVLRP 545

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716
           K  E  I+I+   D  + + V  D  RL Q+   I+ NA+ F+  G   I   L+A    
Sbjct: 546 KFEEKKIQIRRHWDSDIPTQVLTDAPRLKQLLLNIVGNAIKFTQTGEVRIVARLEAEATR 605

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              IF V + G  IP+   + +F  F        RR  G GLGL+I  +   L GG +  
Sbjct: 606 SRLIFDVIDTGIGIPQGKLEMIFQPFSQADSSVTRRFGGTGLGLTISRNLAELLGGSLHA 665

Query: 775 SS 776
            S
Sbjct: 666 ES 667


>gi|241203748|ref|YP_002974844.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857638|gb|ACS55305.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 503

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 3/229 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623
           A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N +Q +YV  +  S   LL++
Sbjct: 228 ANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSV 287

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VN +LD++ ++AG  +L      ++  +   +  +A +     + +       LG  VAD
Sbjct: 288 VNTMLDMSKIEAGRYELILEAFDISSSVKSCESMLALQAKTKGLTLTSRIQRDLGEVVAD 347

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           ++ + QI   ++ NA+ F+  G  V + AA  +G    +V + G  IP D    +   FV
Sbjct: 348 QRAIQQILINLVGNAIKFTEAGGVVSVDAAARDGILKLTVSDTGIGIPADKLALLGQPFV 407

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +   RR  G GLGLS+V+  + LHGG+ +I+S     T I   I +
Sbjct: 408 QIQNDYTRRFEGSGLGLSLVKGLVALHGGYFAIASQPGEGTIITIEIAA 456


>gi|260461500|ref|ZP_05809747.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259032570|gb|EEW33834.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 779

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 125/233 (53%), Gaps = 12/233 (5%)

Query: 553 RALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA  +  E+L KA   D  K+ F+ ++S+E+R+P+  ++G  +LL  ++L    ++Q  +
Sbjct: 215 RAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTEL---TARQKTF 271

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S   LL ++NDILD + ++AG + L+ +   L + + +V   ++ ++ E N+ +
Sbjct: 272 TDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLAEAVEDVATLVSARVAEKNLEL 331

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG--DFIFSVKN 725
            V  D +L ++ V D  R  QI + ++ NA+ F+ KG  +I +     NG       V++
Sbjct: 332 IVRVDPRLPTYVVGDAGRFRQIVTNLVGNAVKFTEKGHVLIDVGGETVNGVVQLKLRVED 391

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  IP +  ++VF +F        RR  G GLGL+I    ++L  G + + S
Sbjct: 392 TGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVES 444


>gi|47569834|ref|ZP_00240503.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47553480|gb|EAL11862.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 453

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   +E + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 221 HSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 338

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A +  G  +  VK+ G  I
Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVIEVKDEGMGI 395

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452


>gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 846

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 122/250 (48%), Gaps = 11/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + L+   EA   A+  K++F+  +S+ELR+P+  ++G  DLL +   G L  +Q   
Sbjct: 414 RTAQDLSIAKEAAENANRAKSAFLATMSHELRTPMNGVLGMADLLLS---GPLTQEQRDG 470

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  S   LL ++NDILDL+ ++AG ++L         +L  V + +     E  + +
Sbjct: 471 VTTIRESGECLLTILNDILDLSKLEAGRLELEPEPTSPMTVLETVVEVLRPNAKEKGLVL 530

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSV 723
               +G +    ++D  RL QI   ++ NA+ F+ +G   +  AAR     D  + +F+V
Sbjct: 531 TKSEEGHIPQRIMSDPTRLRQILFNLVGNAIKFTPQGEVSVSLAARACDDPDTAELVFTV 590

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IPE M   +F RF        R   G GLGL+I      L  G + + S++   
Sbjct: 591 RDTGIGIPEAMLPRLFTRFQQADSSISRTYGGTGLGLAITRELTTLMNGTIEVESTEGKG 650

Query: 782 TTINCRIPSK 791
           +    R+P +
Sbjct: 651 SCFTVRLPVR 660


>gi|17986700|ref|NP_539334.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1
           str. 16M]
 gi|17982322|gb|AAL51598.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1
           str. 16M]
          Length = 813

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 445 LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 482

Query: 500 FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
           F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 483 FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 542

Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
               + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 543 FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 602

Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 603 KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 662

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
            +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 663 LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 722

Query: 716 NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
           NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 723 NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 782

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
             +    +I S+    T +    P 
Sbjct: 783 EANRAQFAIDSNPGQGTVVEIVFPP 807


>gi|85715377|ref|ZP_01046359.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697798|gb|EAQ35673.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 788

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 139/270 (51%), Gaps = 5/270 (1%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D  L  ++I L   Q  L    +  +  A++   +KN A   A+  K+ F+ ++S+ELR+
Sbjct: 492 DLRLRATVIDLKRTQATLERQALKLADLAQKYADQKNRA-EDANRAKSKFLANMSHELRT 550

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           PL  IIGF++++     G+L SK+ S+Y   I  S   LL ++ND+LD++ ++AG M L+
Sbjct: 551 PLNAIIGFSEIMSNGMFGTLGSKKYSEYCRDILTSGQYLLEVINDVLDMSKIEAGRMNLD 610

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                L  +L+E  + ++ +  + ++   + ++  + S VADR+ + QI   +LSNA+ F
Sbjct: 611 MEAFDLTGVLDESLRVVSGRTSDKSLTFDLRNNDGI-SIVADRRAVKQILVNLLSNAIKF 669

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           +  G  ++ ++         ++ + G  I     + +   F  V +       G GLGL+
Sbjct: 670 TPDGGRIMARSKIFENFITLTIADTGIGIASHALRKLGKPFEQVESQLTKTHAGSGLGLA 729

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I +S +NLH G + + S     T +   +P
Sbjct: 730 IAKSLVNLHNGSMKLRSKPGVGTVVRVTLP 759


>gi|186682599|ref|YP_001865795.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465051|gb|ACC80852.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 740

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 130/238 (54%), Gaps = 4/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK ++L+KA+E+K  F+ ++S+E R+PL +I+  + +L     G L ++Q + V +I 
Sbjct: 203 LDEKADSLQKANELKTRFLSNMSHEFRTPLNSILSLSRMLLARMDGDLTAEQEKQVTFIQ 262

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIRIKVIS 673
            +++ L  LVND+LDLA V+AG +++  S+  ++DL   ++  +   + + +++ + +  
Sbjct: 263 KAASGLSELVNDLLDLAKVEAGKIEVRPSSFEVSDLFATLRGMLRPLLVQGSSVALNIEE 322

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +G   +D  ++ QI    +SNA+ F+ +G   +    R +   IFSV + G  I   
Sbjct: 323 PEGIGQIYSDEGKVAQILRNFISNALKFTEQGEVRVTSVQRGH-TVIFSVSDTGIGIATA 381

Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F  FV   ++ + Q +G GLGL +      L GG +S++S     +T    IP
Sbjct: 382 DRERIFEDFVQIESSLQKQVKGTGLGLPLSRKLTELLGGSISVTSKLGEGSTFTASIP 439


>gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 919

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 135/255 (52%), Gaps = 15/255 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           +VT +  AE  L  + + ++ A   K+ F+ ++ +E+R+PL  ++G + L LKT     L
Sbjct: 415 DVTANREAEE-LRHERDLVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTE----L 469

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + KQ  Y+E I +SS  LLN++NDILD + ++AG ++L  + + L ++L  +     +K 
Sbjct: 470 DRKQRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLELEKTDLNLYEVLGNISDMHQSKA 529

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
            E  I  +V ++       V D  RL Q+ + +++NA+ F+ KG  V+ +K  R   + +
Sbjct: 530 QEKGIEFRVRLAPDLPNKLVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRREEEEV 589

Query: 721 ---FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              F V++ G  I PE M K +F  F        RR  G GLGLSI    + L GG + +
Sbjct: 590 VVHFCVQDTGIGIAPEQMGK-IFTPFTQADSSTTRRYGGTGLGLSISRQLVELMGGELQV 648

Query: 775 SSSDEGVTTINCRIP 789
            S     ++ +  +P
Sbjct: 649 ESVPGSGSSFSFTVP 663


>gi|322383664|ref|ZP_08057415.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151876|gb|EFX44819.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 425

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASST 618
           + ++K D++KN F+  +S+ELR+PLT+I G+++ L + +    + ++++  +  IS  + 
Sbjct: 195 DEIQKNDKLKNEFISSISHELRTPLTSIKGWSETLVSGEFQ--DPEETRLGINIISKETD 252

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L+ LV D+LD + + +G +K++   + LN L+ E+            IR++V ++ +  
Sbjct: 253 RLIGLVEDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEEEPI 312

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             + D  R+ QI    + NAM F+ +G  + +   ++  + + +V++ G  IP ++ K V
Sbjct: 313 HIMGDGNRIKQILINSIDNAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPEILKHV 372

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F        R+G GLGLSI +    L GG ++I S     TTI  R P
Sbjct: 373 TEKFFKGT---SRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFP 420


>gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis]
          Length = 967

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 127/236 (53%), Gaps = 12/236 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  L +  EA   A+  K+ F+  +S+E+R+P+  IIG +DLL  +   +L  KQS+Y
Sbjct: 308 RIEAELEKAREAAVAANNAKSEFLASMSHEIRTPMNAIIGMSDLLWET---TLTPKQSEY 364

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+    +   LL ++NDILDL+ V+AG + + +    L + + +  + +A + HE  + +
Sbjct: 365 VKVFRNAGENLLQIINDILDLSKVEAGQITIEHIEFNLREQIEKTCEVMAFRAHEKGLEL 424

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSV 723
              +++    SF+ D  RL QI + ++ NA+ F+  G  ++L   R+      G  +F V
Sbjct: 425 NCHLAEDIPTSFIGDPVRLHQILTNLIGNAIKFTRTGE-ILLTGKRNKLPGKKGMLLFLV 483

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + G  +PE+    +FN F  V ++   Q  G GLGL+I +  + L  G + + S+
Sbjct: 484 SDTGIGLPEEKQSIIFNIFSQVDSSTTRQYGGTGLGLAICKRLVELMDGEIWVEST 539


>gi|262404766|ref|ZP_06081321.1| BarA sensory histidine kinase [Vibrio sp. RC586]
 gi|262349798|gb|EEY98936.1| BarA sensory histidine kinase [Vibrio sp. RC586]
          Length = 927

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        D+L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQDILEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V +++ RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei DM98]
          Length = 927

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 416 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 475

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 476 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 532

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 533 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 592

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 653 IEIDSLPDFGTTVTVALPLRE 673


>gi|251795760|ref|YP_003010491.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543386|gb|ACT00405.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 125/243 (51%), Gaps = 7/243 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R  RA++  NE L ++D  K  FV +VS+E++SPL +I G+ D L    +     +   
Sbjct: 221 ARHFRAMS--NE-LERSDRSKKEFVANVSHEIQSPLASIQGYADSLVHQDIND-AERIRH 276

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I   +  L  L   +L L+T+D           +L   L +  Q +  ++ E  I 
Sbjct: 277 YASIIGQETRHLAALSRQLLLLSTLDHSGYSPGKQPFLLKPQLRQAVQLLEWQLTEKEIA 336

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I+V   GKL  +  D   L+Q+++ +LSNA+     G ++ + A +++G  I +V++ G 
Sbjct: 337 IRVAVPGKLRIY-GDEVLLMQVWTNLLSNAVKHIPGGRSIHVSAEQEDGACIVTVRDTGD 395

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPED    +++RF   ++ R +R G  GLGLSIV+  + LHGG +   S  E  TT   
Sbjct: 396 GIPEDQLPYIYDRFYRGDSARDRRSGSTGLGLSIVQRIVQLHGGTIEADSRFERGTTFRV 455

Query: 787 RIP 789
           RIP
Sbjct: 456 RIP 458


>gi|120611637|ref|YP_971315.1| histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120590101|gb|ABM33541.1| histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 298

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + E LRKA E+K+ F+ ++S+E R+P+++I     LL     G LN++QS+ V +I 
Sbjct: 48  LDAQAEQLRKATEMKSRFLAYMSHEFRTPISSIRSIARLLADHVDGPLNAEQSRQVAFIQ 107

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A++    ++V+D+LDLA ++AG + ++ +   + DL   ++          ++ +     
Sbjct: 108 ATAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVDLFQALRGMFKPVATNPDLNLVFEEP 167

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SNA+ F+ +G   +   A D     FSV + G  I  + 
Sbjct: 168 RNLPPLFTDDRKLSQILRNFISNALKFTPRGEVRVSAQACDGDRVRFSVADTGIGIAPEF 227

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG---VTTINCRI 788
             SVF  F  V +  + + RG GLGL++      L GG V + S   EG     T+  R+
Sbjct: 228 HASVFEDFSQVGSPLQKRLRGTGLGLALCRQLAELLGGAVELQSVPGEGSVFSVTLPVRL 287

Query: 789 P 789
           P
Sbjct: 288 P 288


>gi|329848033|ref|ZP_08263061.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843096|gb|EGF92665.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 1140

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 129/241 (53%), Gaps = 10/241 (4%)

Query: 558 KNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           K+E  RKA E+      K+ F+ ++S+ELR+PL + +    LL  +  G+L  +Q ++ +
Sbjct: 451 KDEVDRKARELEQSSRYKSDFLANMSHELRTPLNSSLILAKLLSDNSEGNLTEEQVEFAQ 510

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S   LL L+NDILDL+ ++AG M+++  ++ L  L +++++      ++  +++  
Sbjct: 511 TIQSSGNDLLALINDILDLSKIEAGQMEIHTESVSLKRLASDMERVFTPIANQKRLKMTA 570

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            + +G   +   DRQRL Q+   +LSNA  F+  G  V L   +D    +F+VK+ G  I
Sbjct: 571 RLGEGVPETVTTDRQRLEQVLKNLLSNACKFTEHGH-VELAILKDGDRIVFAVKDTGIGI 629

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    VF  F        R+  G GLGLSI      L GG++S+ S  +  +T +  I
Sbjct: 630 SAEHQHQVFEAFRQADGTISRKYGGTGLGLSISRELSRLLGGNLSVISQVDRGSTFSLSI 689

Query: 789 P 789
           P
Sbjct: 690 P 690


>gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1100

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 17/263 (6%)

Query: 532 PLPNAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           P  N   ++  V  T  V  ER      L +  E    A+  K+ F+ ++S+E+R+PL  
Sbjct: 683 PSENDGKLMGIVAATIRVEEERKISAQQLVKAKEIAESANRAKSEFLANMSHEIRTPLNG 742

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G   L+  +KL   + +Q  YV+    S   LL ++ND+LD + ++AG++ +    + 
Sbjct: 743 IFGMLQLVGGTKL---DDEQRDYVDTALTSGRSLLRVINDVLDFSKMEAGMLTVESEPLD 799

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           +  ++ +V ++ + +  E  + + V +D  +   + +D  R+ QI   ++ NA+ F+  G
Sbjct: 800 IRHVVADVLENFSVQAAEKQLVMAVETDASVPPLILSDEARIRQILFNLVGNAVKFTPSG 859

Query: 706 STVILKAAR--DNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
              +    +  D  D       SV + G  IPE+M  SVF+ F  V  +H  +  G GLG
Sbjct: 860 RITVESWVQRADTTDQTMRLFLSVSDTGIGIPENMLGSVFSAFSQVDGSHTRKYGGTGLG 919

Query: 758 LSIVESFINLHGGHVSISSSDEG 780
           L IV+  ++L GG + + S  EG
Sbjct: 920 LGIVKRLVDLMGGEIYVESDGEG 942


>gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
 gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
          Length = 1032

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 521 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS- 579

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 580 --PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 637

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 638 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 697

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 698 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 757

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 758 IEIDSLPDFGTTVTVALPLRE 778


>gi|94969439|ref|YP_591487.1| histidine kinase [Candidatus Koribacter versatilis Ellin345]
 gi|94551489|gb|ABF41413.1| histidine kinase [Candidatus Koribacter versatilis Ellin345]
          Length = 603

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 2/237 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+   L++  E+K  F+ ++S+E R+PL +II  + LL     G L S+Q + V YI 
Sbjct: 209 LDERAGFLQRTSELKTRFLSNMSHEFRTPLNSIISLSQLLLDRVDGDLGSEQEKQVTYIR 268

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL LVND+LDLA ++AG + +  +   +N L   ++  +   +    + +     
Sbjct: 269 RSADTLLELVNDLLDLAKIEAGKVTVYPNEFRVNALFGALRGMLRPLLTNPEVSLTFEDA 328

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            ++G    D  ++ QI    +SNA+ F+  G   +      +   IFSV+++G  I +  
Sbjct: 329 PEIGVLWTDESKVSQILRNFISNALKFTQGGEVAVTARLGQHDTVIFSVRDSGIGIAKSD 388

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF  F  + NA + + +G GLGL + + F  L GG VS+ S     +  +  IP
Sbjct: 389 QVRVFEEFTQIENALQRRNKGTGLGLPLTKKFAELLGGSVSLESETGKGSVFSAIIP 445


>gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 1155

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 131/245 (53%), Gaps = 3/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q ++
Sbjct: 468 QAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSEEQVKF 527

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I ++   LLNL+NDILD+A V+AG +++   T  +  L+  ++           +  
Sbjct: 528 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAF 587

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +V  + ++  +   DRQRL QI   +LSNA+ F+ +G   +  + +     +F+V++ G 
Sbjct: 588 EVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERGQVSMNVSFQAGSGIVFAVRDTGI 647

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D  +++F  F        RR  G GLGLSI     +L GG +++ SS    +  + 
Sbjct: 648 GIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVESSPGQGSVFSL 707

Query: 787 RIPSK 791
            +P +
Sbjct: 708 ILPER 712


>gi|288962975|ref|YP_003453269.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288915241|dbj|BAI76725.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1310

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 126/250 (50%), Gaps = 14/250 (5%)

Query: 535 NAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            A  M       D+ R E  AL  + EA   A + K+ F+  +S+E+R+P+  I+G T+L
Sbjct: 597 QAADMCALAEGLDAAREEADALRARAEA---ATQAKSEFLAAMSHEIRTPMNGIMGMTEL 653

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  + L     +Q Q+ + I +SS  LL ++NDILD++ ++AG + +        DL+  
Sbjct: 654 LFDTPL---TEEQRQFAQAIRSSSNALLTIINDILDISKLEAGRVTIETLPFDPADLVEG 710

Query: 654 VKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V + +  + HE  I I    D  L  + + D  R+ QI   ++ NA+ F+ +GS  +   
Sbjct: 711 VVELLTPRAHEKGIEIGFYIDPPLRRTLLGDPTRIRQILVNLVGNAVKFTDQGSVAVELE 770

Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
           AR+  D       +V + G  IP +   ++FN+F  V  +   +  G GLGL+I      
Sbjct: 771 AREATDAHLVLRMTVTDTGIGIPAEAMPTLFNKFQQVDGSITRKFGGTGLGLAICRQLSE 830

Query: 767 LHGGHVSISS 776
           L GG +++ S
Sbjct: 831 LMGGSIAVES 840


>gi|288561543|ref|YP_003428949.1| sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548175|gb|ADC52057.1| sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 470

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 4/233 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L++  + ++ F   +S+EL++P++ ++G++++LK  KL     ++ QY+  +   +T 
Sbjct: 229 QELKRHHDTRSEFFASISHELKTPVSYLMGYSEVLK-EKLYQTEEEKEQYLSILEHEATR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L++D+ DL+ ++ G   +N   I L +L + +    + K  E ++   V  D  L  
Sbjct: 288 LNYLISDLFDLSKMEEGKFDINKEWIDLTELADNLDMKYSLKAKEKDLLFTVKVDENLSL 347

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F  D +R+ Q+F+ +L NAM  ++ G         DN   I  +K+ GS IP D    +F
Sbjct: 348 FYGDGKRIEQVFTNLLDNAMRHTTNGEVTCEFRQGDNQINII-IKDTGSGIPADELPFIF 406

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +RF  V  +   +  G GLGL+IV+  + LHGG + I+S +   T      P+
Sbjct: 407 DRFYRVEKSRSREFGGTGLGLAIVKMLVKLHGGTIDITSKENEGTQFTLSFPN 459


>gi|163793548|ref|ZP_02187523.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159181350|gb|EDP65865.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 514

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 137/257 (53%), Gaps = 11/257 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T     E  L E   A ++  E K  F+ +VS+ELR+PL  IIG +++++    G 
Sbjct: 240 FRDITPHKAREEELVEAQLAAKEGSESKTRFLANVSHELRTPLNAIIGMSEIIRDEMWGG 299

Query: 602 L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + N K  +Y   I+ S   LL+++N ILD + ++   + L+   + +  +L++ ++++  
Sbjct: 300 IGNPKYREYATDINDSGLHLLDVINAILDYSRIEMDKVTLHDDQVDVVGVLDQSRRTVQR 359

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDF 719
            + E  +  ++ + G L   VADR+ + Q+   +LSNA+  +  G  + L A A + G+ 
Sbjct: 360 LLDEGGLTCELQAKGPL-VLVADRRSVRQMLLNLLSNAIKHTPPGGRITLTAEAGNEGEL 418

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           + +V+++G  IP +    V   F     +S + +G   G GLGL+I +  I  HGG +SI
Sbjct: 419 VLTVRDSGEGIPRERLALVTEPFNLDEDISVSRQG---GTGLGLAITKGLIKRHGGAMSI 475

Query: 775 SSSDEGVTTINCRIPSK 791
           +S     TT+    P++
Sbjct: 476 NSRVGEGTTVRLVFPAE 492


>gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
 gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
          Length = 1014

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAY 619

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 620 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760


>gi|163847652|ref|YP_001635696.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525511|ref|YP_002569982.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668941|gb|ABY35307.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449390|gb|ACM53656.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 876

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 16/269 (5%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LT  NV      E+ +  + E LR A       D  K+ F+  +S+ELR+PL  IIGF+ 
Sbjct: 593 LTIENVQLYNDLEQQVARRTEELRVALERAQLADRRKSDFLASISHELRTPLNAIIGFST 652

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L       L   Q + ++ I+ +   LL+L+N++LDLA ++AG + L  S + L ++ +
Sbjct: 653 VLLDDTDQPLTPTQREDIQSINRNGRFLLHLINELLDLARIEAGHLNLEISNVNLYNITS 712

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV  ++ T +    + ++      L    AD  RL QI   +LSNA+ F+ +G+  +   
Sbjct: 713 EVCDTVQTLLRNRPVTLRNAVPVTLPDIAADGDRLRQILFNLLSNAIKFTERGTITVSAR 772

Query: 713 ARDN-------GDFI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVES 763
             D        G ++  SV + G  IP +    +FN FV  +  R +  G GLGL+I   
Sbjct: 773 VHDEVNEDGKVGRYVAVSVSDTGIGIPLERQHEIFNEFVQIHGRRSRLSGTGLGLAITRK 832

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +   GG + + S+    +T    IP  +
Sbjct: 833 LVLAQGGRIWVDSTPGIGSTFTFTIPVAQ 861


>gi|300773123|ref|ZP_07082992.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759294|gb|EFK56121.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 1198

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 135/247 (54%), Gaps = 9/247 (3%)

Query: 551 AERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER L   EK E L  + + K+ F+ ++S+ELR+PL +I+  + LL  +   +LN  Q +
Sbjct: 506 AERNLEIQEKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLLSENTDDNLNEDQIE 565

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             + I +S T LL+L+++ILDL+ ++AG M+L Y  + L+D+  E+    A  + E  + 
Sbjct: 566 SAKVIQSSGTSLLSLIDEILDLSKIEAGKMELEYQHVKLSDVTQELNSLFAPIVKEKALD 625

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKN 725
           + ++    L S +  DR RL Q+   +LSNA+ F+SKGS    I +   +  + +F+VK+
Sbjct: 626 LNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIKFTSKGSITLTITEEQSNRNNIVFAVKD 685

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I E+  K +F  F   A    RR   G GLGLSI      L GG + + S +   +
Sbjct: 686 TGIGIAEEKQKIIFEAF-QQADGSTRRKFGGTGLGLSISREIARLLGGEIRLQSKENEGS 744

Query: 783 TINCRIP 789
             +  IP
Sbjct: 745 IFSLIIP 751


>gi|88799664|ref|ZP_01115239.1| sensor protein LuxQ [Reinekea sp. MED297]
 gi|88777558|gb|EAR08758.1| sensor protein LuxQ [Reinekea sp. MED297]
          Length = 770

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 131/243 (53%), Gaps = 9/243 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV-E 611
           R L    +  R   E K++ +  VS+E+R+P+  IIG + LL+      L+ K++ ++ +
Sbjct: 392 RELFNSRKQARAESEAKSNLIAQVSHEIRTPMNGIIGTSQLLE----AHLHGKEAHHLND 447

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S T LL ++ND+LDL+ ++ G ++L    + L  L+ +V Q + +++ +  ++ ++
Sbjct: 448 VIFHSGTTLLTIINDLLDLSRLETGRIRLRPEPVDLRKLMGQVFQILNSQIKQKKLQYEL 507

Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                +  +V  D  RL Q+   I+ NA+ ++ +G  V + A   +      + + G  I
Sbjct: 508 TVSDHVPDWVELDPVRLRQVLLNIVGNAIKYTDQGQ-VRMTADYRHPSLSIQIDDTGRGI 566

Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE   KS+F  +V      +  R+G GLGL I +S ++L  GH+S+ S++   TT+   +
Sbjct: 567 PETHLKSLFQPYVQVRQDAEEERKGTGLGLHIAQSLVDLMEGHLSLESTEGQGTTVQLLV 626

Query: 789 PSK 791
           P++
Sbjct: 627 PTR 629


>gi|269967900|ref|ZP_06181941.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B]
 gi|269827498|gb|EEZ81791.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B]
          Length = 566

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 15/245 (6%)

Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           E+   LRK    +++    FV  +++ELR+PL  ++G  +LL  ++L     +Q QY+  
Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQL---EEEQRQYLSN 245

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++ S  +L  ++ND+LD + ++AG+M++ +      +L   +    A K  E  I   + 
Sbjct: 246 LTQSGDLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFSI- 304

Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            D KLG     V D +R+ QI   ++ NA+ F+  G  V+L+    NG   F V++ G  
Sbjct: 305 -DKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGG-VVLRVEWLNGTAYFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPIKAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKVA 422

Query: 788 IPSKE 792
           IP +E
Sbjct: 423 IPLEE 427


>gi|255010868|ref|ZP_05282994.1| putative two-component system, sensor kinase [Bacteroides fragilis
           3_1_12]
          Length = 537

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 144/258 (55%), Gaps = 12/258 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F ++T+ ++ +R L E  E   +++ +K++F+ ++S+E+R+PL  IIGF+DL+  + 
Sbjct: 277 LLRFEDITEKLKVDRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 336

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ +Y+  +++++ +LL L++DILDL+ ++AG M  +Y+   +N+L+ ++   +
Sbjct: 337 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQM 393

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG- 717
             K     ++I             DR RL Q+   +++NAM F+++GS  +    R NG 
Sbjct: 394 QQKNQRPGVQILFTEKEPCCVINTDRLRLSQVIINLMNNAMKFTAEGSITL--GYRLNGQ 451

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  F VK+ G  IP D  + VF RFV  N+     +G GLGL+I    I   GG + +
Sbjct: 452 KNELYFFVKDTGIGIPADKAEKVFERFVKLNSF---VKGTGLGLAICRVIIERLGGTIGV 508

Query: 775 SSSDEGVTTINCRIPSKE 792
            ++ E       R+P +E
Sbjct: 509 DTAVEEGACFWFRLPVQE 526


>gi|224535763|ref|ZP_03676302.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522623|gb|EEF91728.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1031

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 125/213 (58%), Gaps = 7/213 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D++K++F+ ++S+E+R+PL  I+GF+ L+    + + + ++  Y++ I+ ++ +LL L
Sbjct: 661 QSDKLKSAFLANMSHEIRTPLNAIVGFSGLM----MYASDEEKEDYMQIINNNNEMLLKL 716

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++DILDL+ ++AG ++L Y    L D  N +  S+  +     I+I  ++  +      D
Sbjct: 717 ISDILDLSKLEAGSVELKYEEFDLTDYFNSMFASMKQRATNPKIQIVAVNPYQHCLVTLD 776

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R R+ QI +  ++NA+ ++++G+  +    R+ G + F VK++G  IP++    VF+RF 
Sbjct: 777 RNRVAQIITNYVTNAIKYTTEGTIEMGYEYREEGIY-FYVKDSGIGIPDEKKNKVFHRFE 835

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 Q  G GLGLSI ++     GG+V   S
Sbjct: 836 KLDEFAQ--GTGLGLSICKAIAEAMGGNVGFES 866


>gi|167464605|ref|ZP_02329694.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 473

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASST 618
           + ++K D++KN F+  +S+ELR+PLT+I G+++ L + +    + ++++  +  IS  + 
Sbjct: 243 DEIQKNDKLKNEFISSISHELRTPLTSIKGWSETLVSGEFQ--DPEETRLGINIISKETD 300

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L+ LV D+LD + + +G +K++   + LN L+ E+            IR++V ++ +  
Sbjct: 301 RLIGLVEDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEEEPI 360

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             + D  R+ QI    + NAM F+ +G  + +   ++  + + +V++ G  IP ++ K V
Sbjct: 361 HIMGDGNRIKQILINSIDNAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPEILKHV 420

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F        R+G GLGLSI +    L GG ++I S     TTI  R P
Sbjct: 421 TEKFFKGT---SRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFP 468


>gi|71908460|ref|YP_286047.1| PAS [Dechloromonas aromatica RCB]
 gi|71848081|gb|AAZ47577.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 764

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 139/265 (52%), Gaps = 13/265 (4%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVSY 578
           D  +E +II + +   +  F  +   +  E+AL    T  +EA  +A+++K +F+ ++S+
Sbjct: 337 DFPVELTIIEINSGDGVRHFALLARDISEEQALATYLTRASEAAERAEQMKTAFLANMSH 396

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  IIG   +L  ++L   ++ Q +YV +I A+   LL L+ ++LD++ ++AG +
Sbjct: 397 EIRTPLNAIIGMAHILSRTEL---DTAQKKYVGHIDAAGEHLLGLITNVLDMSKIEAGRL 453

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L    + + +++ EV   +A +  E  + +++         V D  RL Q     +SNA
Sbjct: 454 ELENIPLAVENIVFEVLSMVADQAAEKGLDVRIGELDAPSGLVGDPVRLRQALLNYVSNA 513

Query: 699 MDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + F++ GS    VI +A  ++   + F V + G  I  +    +F+ F    +   RR  
Sbjct: 514 IKFTADGSIDVRVITQAVSEDSVLLRFEVADTGIGISAEARDEIFSAFRQADNSTTRRYG 573

Query: 753 GVGLGLSIVESFINLHGGHVSISSS 777
           G GLGL+I      L GG V +SS+
Sbjct: 574 GTGLGLAITRQLAELMGGEVGVSST 598


>gi|307151274|ref|YP_003886658.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981502|gb|ADN13383.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1811

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + IK+ F+  +S+ELRSPL  I+G+T +L+T KL    ++Q+  +  I  ++ +   L+ 
Sbjct: 1438 NRIKDEFLAVLSHELRSPLNPILGWTQMLQTYKLDEKATQQA--LATIERNAKLQTQLIE 1495

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            D+LD++ +  G M LN + + L  ++    +++       NI+I+      +G  + D  
Sbjct: 1496 DLLDISRILRGKMVLNIAPVNLVSVIQSALETVRLAAEAKNIKIQTRFAAGVGEVLGDSA 1555

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            RL Q+   +LSNA+ F+  G  + +     + +   SVK+ G  I  +    VF  F   
Sbjct: 1556 RLQQVVWNLLSNAVKFTPAGGQIEIDLELKDINAQISVKDTGKGINPNFLPHVFEYFRQE 1615

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
              +  R+  G+GLGL+IV     LHGG V++ S  EG+  T    +P
Sbjct: 1616 DSKTTRKYGGLGLGLAIVRHLTELHGGTVAVDSPGEGLGATFTVSLP 1662


>gi|91224277|ref|ZP_01259539.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01]
 gi|91190619|gb|EAS76886.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01]
          Length = 566

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 15/245 (6%)

Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           E+   LRK    +++    FV  +++ELR+PL  ++G  +LL  ++L     +Q QY+  
Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQL---EEEQRQYLSN 245

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++ S  +L  ++ND+LD + ++AG+M++ +      +L   +    A K  E  I   + 
Sbjct: 246 LTQSGDLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFSI- 304

Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            D KLG     V D +R+ QI   ++ NA+ F+  G  V+L+    NG   F V++ G  
Sbjct: 305 -DKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGG-VVLRVEWLNGTAYFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPIKAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKVA 422

Query: 788 IPSKE 792
           IP +E
Sbjct: 423 IPLEE 427


>gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei K96243]
 gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein
           [Burkholderia pseudomallei K96243]
          Length = 1014

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 619

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 620 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760


>gi|116619668|ref|YP_821824.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116222830|gb|ABJ81539.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 729

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 2/237 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K + LR+ADE+K+ F+ ++S+E R+PL +I+  T LL     G L  +Q + V +I 
Sbjct: 221 LDDKADHLRRADEMKSRFLSNMSHEFRTPLNSILALTRLLLDRAEGDLTGEQERQVFFIR 280

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  LVND+LDLA V AG   ++ +   + +L   ++  +   +    + +     
Sbjct: 281 KSAESLYELVNDLLDLAKVQAGKTTVHLAPFDVKNLFGALRGMLRPLLVNTAVNLVFEEP 340

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +   V+D  ++ QI    +SNA+ F+  G   +     D    IFSV + G  I    
Sbjct: 341 EGISEVVSDEGKISQILRNFISNALKFTDHGEVRVFVRREDADRVIFSVSDTGIGIDPAD 400

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF  F       QR  +G GLGL +      L GG VS+ SS    +T +  IP
Sbjct: 401 ADRVFEEFTQLESPIQRKVKGTGLGLPLSRKLAELLGGTVSVESSPGVGSTFSLTIP 457


>gi|229184210|ref|ZP_04311419.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1]
 gi|228599325|gb|EEK56936.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1]
          Length = 444

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 129/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +   + E  ++ IK
Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNVEEKKMQFIK 329

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++G  I
Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 386

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 387 AKEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443


>gi|197106180|ref|YP_002131557.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196479600|gb|ACG79128.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 588

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K++F+  +S+E+R+PL  ++G   +++  +LG    +Q Q++  I  S+  L+ ++
Sbjct: 198 ASRAKSAFLATMSHEIRTPLNGVLGMVQVMERGRLGV---RQRQHLAVIRESAGALMKVL 254

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD++ ++ G ++L+     L      + +  A    E  +  ++ + D   G  + D
Sbjct: 255 NDVLDISKIEVGKLELHAQPFELGAFAEGIGRLYAVLAEERGLSFRLSVEDAGHGRLIGD 314

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
             RL QI S +LSNA+ F+ +G  V+  AA D+     +V++ G  IP      +F++F 
Sbjct: 315 EARLRQIVSNLLSNAVKFTPEGEVVVSFAA-DDRSLTCAVRDTGIGIPAAQQAVIFDKFT 373

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            V +       G GLGL+I    + L GG + ++S+    +T   R+P
Sbjct: 374 QVDDGAARSFEGTGLGLAICRDLVELMGGEILVASTPGEGSTFTFRVP 421


>gi|60680953|ref|YP_211097.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|253563207|ref|ZP_04840664.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265762908|ref|ZP_06091476.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|60492387|emb|CAH07154.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|251946983|gb|EES87265.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263255516|gb|EEZ26862.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 870

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  LT   +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G    +   ++E
Sbjct: 632 EEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIE 690

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +  +LL L+NDILDL+ +++G M   ++   L  L+  V  S    M      +  
Sbjct: 691 TINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLK 750

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + +      V D  RL Q+ + +++NA+ F+++GS        + G     V++ G  I 
Sbjct: 751 LPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGIS 810

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  + +F RF       Q  G GLGLSI ++ +    G ++++S +   T    R+P
Sbjct: 811 EDGLRHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866


>gi|291523437|emb|CBK81730.1| amino acid-binding domain sensor hybrid histidine kinase
           [Coprococcus catus GD/7]
          Length = 959

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 135/266 (50%), Gaps = 19/266 (7%)

Query: 540 LTFVNVTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +T V ++   +A++A+ EK E +       + A++ K +F+ H+S+++R+P+  IIGFT 
Sbjct: 548 VTMVRLSARKKAQKAVQEKAEEMAELAEHAQAANKAKTAFLSHMSHDMRTPMNAIIGFTG 607

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +   +   + + +    +E I  SS  LL+L+NDILDL  ++ G +K N     + ++ +
Sbjct: 608 I---AMKNNPSDEVKNCLEKIDESSEHLLSLINDILDLTRIENGKVKYNPVPADVKNITD 664

Query: 653 EVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +   +I  K+   + K+ + +AD  RL  +   ILSNA  F+  G T+  +
Sbjct: 665 SALDITKGFLTNRDINFKIQREEAKIPNVLADPARLRDVLVNILSNAAKFTPDGGTITFE 724

Query: 712 AA--RDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
           A      GD      + + + G  + E+  K VF  F       R Q  GVGLG++IV+ 
Sbjct: 725 ARCLEKGGDGYINMRYRISDTGIGMSEEFTKEVFEEFAQEDSDVRTQYHGVGLGMAIVKK 784

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
           ++++ GG +S+ S     TT    IP
Sbjct: 785 YVDMMGGTISVQSKKHEGTTFTVDIP 810


>gi|150401859|ref|YP_001325625.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
 gi|150014562|gb|ABR57013.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
          Length = 640

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 137/242 (56%), Gaps = 5/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE+     NE L+K D+ K+  +  VS+ELR+PLT+I G+ +L+    +G++N  Q + 
Sbjct: 399 QAEKLEISYNE-LKKLDKFKSEIISIVSHELRTPLTSIKGYVELVLDGTMGTINESQKRC 457

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E  + +   L  L++++LDL+ ++ G +K++ S + LND++  V  S+       N  I
Sbjct: 458 LEIANENIDRLKRLIDNMLDLSKIERGELKMDISKVNLNDIVQNVVHSLKPLADGKN--I 515

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K+I+  +  +   D+ ++  + + ++ NA+ FS     V ++A ++N     +VK+NG  
Sbjct: 516 KIINKVEPITANLDKDKITGVLTNLIENAIKFSPVNENVTIEAFKENNMVHITVKDNGPG 575

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP+     +F+ F  V+++ +  + G GLGL+I +S +  HGG + + S     +T +  
Sbjct: 576 IPKSELTKIFDIFYQVNSSAKRIKSGSGLGLAICKSIVESHGGKIWVESKFGKESTFHIL 635

Query: 788 IP 789
           +P
Sbjct: 636 LP 637


>gi|269964754|ref|ZP_06178991.1| putative two-component sensor [Vibrio alginolyticus 40B]
 gi|269830414|gb|EEZ84636.1| putative two-component sensor [Vibrio alginolyticus 40B]
          Length = 632

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 127/219 (57%), Gaps = 10/219 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+P+  IIG + LL  +    L+ +Q ++VE I +SS  L+ ++
Sbjct: 240 ANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDT---DLDPQQKEFVEIIDSSSHSLMTII 296

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           +DILD + V+AG ++L Y++  L +LL++V    + K  + N+++    D  L   V  D
Sbjct: 297 DDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQLLSDIDPHLPMEVQGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGD---FIFSVKNNGSSIPEDMCKSVF 739
             RL Q+ + +LSNA+ F+ +G   +L A +R +G+     F V ++G  I ++  +++F
Sbjct: 357 ATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGETAHIRFRVVDSGIGIAKEHQQAIF 416

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            RF        R+  G GLGL+I    +NL GG + ++S
Sbjct: 417 ERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQLTS 455


>gi|253567089|ref|ZP_04844540.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944213|gb|EES84722.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1022

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 130/233 (55%), Gaps = 6/233 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  R    L +      ++D++K++F+ ++S+E+R+PL  I+GF+DLL  S+     
Sbjct: 625 DITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE---Q 681

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y    L +  + +  S+  ++ 
Sbjct: 682 GDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVT 741

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +++  ++   +     D+ R+ Q+ +  ++NA+ ++ +G+  +     D G  ++ V
Sbjct: 742 NPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDTGIRLY-V 800

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ G  IPE+  + VF+RF       Q  G GLGLSI ++     GG V   S
Sbjct: 801 RDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851


>gi|220919555|ref|YP_002494859.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957409|gb|ACL67793.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 461

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 26/249 (10%)

Query: 545 VTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           VTDS R    L +KN+ L       ++ D +K++F+  +S+ELR+PLT++IG+++++   
Sbjct: 191 VTDSYRE---LQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEG 247

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G L ++Q +Y+  I      LL L+  ILD++ ++AG ++L  S +   D +  ++ +
Sbjct: 248 LGGPLTAEQREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEV---DAVQLMRDA 304

Query: 658 IATKMHENNIR-IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----IL 710
           +AT +     + +KV  D   L    ADR +L Q    + SNA+ F+  G ++     +L
Sbjct: 305 VATLLPIARKKGLKVSCDTTPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVL 364

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
            A R        V ++G  IPE+    VF+ F  V  +   +  G GLGL+IV+SF+  H
Sbjct: 365 PAER----LAIHVVDSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAH 420

Query: 769 GGHVSISSS 777
           GG + + S+
Sbjct: 421 GGEIRVRSA 429


>gi|110677757|ref|YP_680764.1| hybrid sensory histidine kinase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453873|gb|ABG30078.1| hybrid sensory histidine kinase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 733

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 189/391 (48%), Gaps = 43/391 (10%)

Query: 417 ENLTVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           EN  V+ DL   +  + +V+    ++I+ +++G A + PD  + ++N ++ +++   E+ 
Sbjct: 40  ENKRVKSDLSAAHKQIERVERRLWQSIETINDGFAFYSPDLELIMANNSYLAVFDGLED- 98

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSII 531
           + PG        T  ++  E          I +  D R +   Q  +E +     E  +I
Sbjct: 99  MQPGVSY----VTVLQFLTEEG--------IVNTGDLRPAEWRQKMIERVQSPEPEAVVI 146

Query: 532 PL-------------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L             P+   +   +N+T +VR E  L     +   A   K++F+ ++S+
Sbjct: 147 QLWNNEYIRMIDRRGPDGDIISLGINITAAVRYEEKLEAARASAEAASRAKSAFLANMSH 206

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  ++G  D+L  +    L+ +Q  YV+ I  S   LL ++ND+LD + ++A  +
Sbjct: 207 EIRTPMNGVVGMADVLTET---PLSEEQRLYVDTIKNSGEALLVIINDVLDYSKIEAEKL 263

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
           +L+     L   ++EV + + +   +  I + V     L S F+ D  RL QI + +L N
Sbjct: 264 QLHPEPFNLEKSIHEVLRLLQSIARDKGILLSVDYALFLSSDFIGDPGRLRQILTNLLGN 323

Query: 698 AMDFSSKGSTVILKAARDN---GDFIFSVK--NNGSSIPEDMCKSVFNRF--VSNAHRGQ 750
           A+ F+++GS  +  + + +   G  I  ++  + G  IPEDM   VF  F  V +    Q
Sbjct: 324 AVKFTTEGSVTVRVSGKPDEATGKVILQIRVEDTGIGIPEDMIDHVFGEFNQVESERNRQ 383

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             G GLGL+I +  I +  G + + +S+EGV
Sbjct: 384 FDGTGLGLAITKKLIKMMNGQIWL-TSEEGV 413


>gi|189346602|ref|YP_001943131.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189340749|gb|ACD90152.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 887

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 161/351 (45%), Gaps = 29/351 (8%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D + +GV V   + RI   N A  ++ +  +N       I   AA   R + E  G  + 
Sbjct: 250 DKMPDGVFVIDQEERITDCNNAALNILEITKN------DIGKPAAKILRQWPELYGLIIE 303

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERAL 555
           A  I   D +++ L         S  +  I+ LP+    LT       N+T   + E  L
Sbjct: 304 AREIKHADLKKQKLDLV------SWFDIDILALPDKNGCLTGRIIVLRNITSRKQIEYDL 357

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E    A+  K+ F+ ++S+E+R+PL  +IGF+ LL  +   +L+  Q  Y+  ++ 
Sbjct: 358 IATREKAEAANHAKSDFIANMSHEIRTPLNGLIGFSSLLMKT---TLDDVQFHYINTVNN 414

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
           S+  LL L+NDILDL+ ++AG ++L    I L +L  EV    A   H  N+ + + I  
Sbjct: 415 SAKQLLGLINDILDLSKIEAGKLELYNEMISLQELAEEVIDMTAFTAHSKNLELLLDIPS 474

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKNNGS 728
               S +AD   L QI   +L NA+ F+S G       TV      D   FIFSV++ G 
Sbjct: 475 SLPESALADPVCLKQILINLLGNAVKFTSGGEIELKIETVPSDNDPDYLVFIFSVRDTGI 534

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            I  +  K +F  F        R+  G GLGL+I    + L G  + + SS
Sbjct: 535 GISPENRKKIFEAFSQEDMSTTRKYGGTGLGLTISNKLLLLMGSCLQLESS 585


>gi|302381354|ref|YP_003817177.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302191982|gb|ADK99553.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 1138

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 10/234 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +A  +A+  K+ F+  +S+E+R+PL  I+  +D+L TS L     +Q +Y + IS
Sbjct: 262 LVVARDAAEQANAAKSDFLAVMSHEIRTPLNGILALSDMLATSDL---PQRQQRYADVIS 318

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD + V+AG M L    + L D   +V    + K     + + V  D
Sbjct: 319 KSGKSLLGIINDILDFSKVEAGKMDLEIVEVDLADAAEDVASLFSEKAASKGLDLAVFVD 378

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIP 731
            +L   + D  RL Q+   +++NA+ F+  G  V++   RD  D      +V + G  IP
Sbjct: 379 PRLPQVLGDPTRLRQVIGNLVNNAIKFTDLGG-VLIAIDRDPEDPRRIRVAVHDTGPGIP 437

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            D   ++F  F        R   G GLGL+I +  +   GG  S+SS+  EG T
Sbjct: 438 ADKLPTLFEAFTQADQSTTRTHGGTGLGLAICDRLVRSMGGVWSLSSTVGEGST 491


>gi|116251150|ref|YP_766988.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255798|emb|CAK06879.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 526

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 3/229 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623
           A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N +Q +YV  +  S   LL++
Sbjct: 251 ANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSV 310

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VN +LD++ ++AG  +L      ++  +   +  +A +     + +       LG  VAD
Sbjct: 311 VNTMLDMSKIEAGRYELILEAFDISSSVKSCESMLALQAKTKGLTLTSRIQRGLGEVVAD 370

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           ++ + QI   ++ NA+ F+  G  V + AA  +G    +V + G  IP D    +   FV
Sbjct: 371 QRAIQQILINLVGNAIKFTEAGGVVSVDAAARDGILKLTVSDTGIGIPADKLALLGQPFV 430

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +   RR  G GLGLS+V+  + LHGG+ +I+S     T I   I +
Sbjct: 431 QIQNDYTRRFEGSGLGLSLVKGLVALHGGYFAIASQPGEGTIITIEIAT 479


>gi|66046171|ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63256878|gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1353

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+ +     L     +   A+  K+ F+ ++S+E+R+P+  +IG + LL  +   +LN
Sbjct: 617 DITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNT---ALN 673

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q Q +  +  +   LL ++NDILD+A ++AG M+L ++      LL+E+ +    +  
Sbjct: 674 DQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQ 733

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718
           E  +R  V     L G  + D  R+ QI   ++ NA+ F+S G   V +    D+ D   
Sbjct: 734 EKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGGVDVTVSREDDHADTCC 793

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV++ G  IP D+   +F+ F        RR  G GLGLS+V       GG + + S
Sbjct: 794 LRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVES 853


>gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
 gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
          Length = 1014

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 619

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 620 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760


>gi|306844607|ref|ZP_07477194.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            BO1]
 gi|306275051|gb|EFM56814.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            BO1]
          Length = 1036

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 192/452 (42%), Gaps = 74/452 (16%)

Query: 388  HKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-------NLTVQVDLETKYNTLVKVQGET- 439
            H D    P    L+ I     RGG   M         NL V  +L    +   K   E  
Sbjct: 604  HADGSEEPVNAHLNAIAW---RGGRALMLSLMPVAAANLPVPAELPAASDDEEKQALEAH 660

Query: 440  -------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                   +D  ++GV +  P+GRI+  N +  +L+  E +                    
Sbjct: 661  VEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERD-------------------- 700

Query: 493  ESDGWDLFAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSII 531
            E++G   F +++ + + +R ++         G L +L+D               L  +I 
Sbjct: 701  EAEGK--FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIG 758

Query: 532  PLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             LP+ +     + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF
Sbjct: 759  KLPHTRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGF 818

Query: 591  TDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            ++L+   K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND
Sbjct: 819  SELMADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLND 878

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
             + E    +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI
Sbjct: 879  AIGEAIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVI 938

Query: 710  LKAARD-NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            +  + + NGD +  V++ G  +          P     ++  R   +A   +  G GLGL
Sbjct: 939  VSTSYELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGL 998

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + ++ +  +    +I S+    T +    P 
Sbjct: 999  PLTKAMVEANRAQFAIDSNPGQGTVVEIVFPP 1030


>gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp.
           m3-13]
          Length = 594

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 169/361 (46%), Gaps = 49/361 (13%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESD--GW 497
           +++GV     DG I ++NP    F   W                      YY E +  G 
Sbjct: 264 MADGVITLNRDGTILVTNPPAEKFLQAW----------------------YYQEGNASGE 301

Query: 498 DLFAAIITSFD-----DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           DL   ++  F      ++ +S++ T +  +     + I+  P    + T  ++  +V   
Sbjct: 302 DLPGEVVEMFQRAVSVEKEQSIELTYQGRT-----WVIVMSP----LYTQTHIRGAVAVI 352

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+    R+ D+++  F+ +VS+ELR+P++ + G+++ +     G+ + ++ +    
Sbjct: 353 RDMTEE----RRLDKLRKDFIANVSHELRTPISMLQGYSEAIVDDIAGT-DEEKKELASV 407

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   S  +  LVND+LDLA ++AG + LNY    +   + ++ +       E +I ++  
Sbjct: 408 IYDESLRMGRLVNDLLDLARMEAGHISLNYENANIVAFVEKITRKFQGLAKEKSIVLQSR 467

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +G  G    D  R+ Q+ + ++ NA+  ++   T+ + A   N      VK++G  IPE
Sbjct: 468 VEGD-GVIQMDVDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNGVKIDVKDSGHGIPE 526

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    VF RF     A    R G GLGL+IV++ I  H G +S+ S +   TT +  IP 
Sbjct: 527 EDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIIEAHRGTISVHSKENEGTTFSMYIPQ 586

Query: 791 K 791
           K
Sbjct: 587 K 587


>gi|282899300|ref|ZP_06307269.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195757|gb|EFA70685.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 315

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 122/216 (56%), Gaps = 3/216 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + +++KN FV  VS+E+R+PLT I G  ++L T  L     +  Q ++   ++S  LL L
Sbjct: 86  EVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEAEQMLKIGVSNSERLLRL 145

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVA 682
           VN+IL+L  +D+G M+LN     +N ++ +  +++     +N+I I   + D      +A
Sbjct: 146 VNNILNLEMLDSGKMRLNLKLCDINIMVKQAMETVRPIAQQNSIEISYNTLDVPNTEILA 205

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D + ++Q+ + +LSN++ FS  G+ V + A   N + I +VK+ G  +P    +++F RF
Sbjct: 206 DEETIVQVLTNLLSNSIKFSHSGNKVEIYATVSNKEIIVAVKDYGKGVPPHKLETIFERF 265

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V  +   Q+ G GLGL+I ++ +  H G + + S
Sbjct: 266 EQVDVSDSRQKGGTGLGLAICKNIVEKHQGKIWVES 301


>gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
 gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
          Length = 714

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 72  QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 127

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 128 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 187

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 188 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 247

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 248 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 289


>gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
 gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
          Length = 1014

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 619

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 620 APLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760


>gi|301162515|emb|CBW22061.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 870

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  LT   +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G    +   ++E
Sbjct: 632 EEELTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIE 690

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +  +LL L+NDILDL+ +++G M   ++   L  L+  V  S    M      +  
Sbjct: 691 TINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLK 750

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + +      V D  RL Q+ + +++NA+ F+++GS        + G     V++ G  I 
Sbjct: 751 LPENSKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGIS 810

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  + +F RF       Q  G GLGLSI ++ +    G ++++S +   T    R+P
Sbjct: 811 EDGLRHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866


>gi|89093662|ref|ZP_01166609.1| histidine kinase response regulator hybrid protein [Oceanospirillum
           sp. MED92]
 gi|89082058|gb|EAR61283.1| histidine kinase response regulator hybrid protein [Oceanospirillum
           sp. MED92]
          Length = 670

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K + L  A++ K+ FV +VS+E+R+P+  ++G  DLL  +    LN KQ +Y + I 
Sbjct: 160 LRKKIKQLESANQYKSIFVSNVSHEIRTPMNGVMGLIDLLLET---PLNDKQLRYAQAIK 216

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++ND+LDL+ V+AG + +  +   L ++++++ +  +    E  + ++    
Sbjct: 217 RSGDSLLRVINDVLDLSKVEAGKLTIEKAEFNLGEVVDDLTECFSPLATEKKLELRTDIQ 276

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSI 730
            K   F+ D  RL QI + +LSNA+ F+ KG T     ++    D     FSV + G  +
Sbjct: 277 LKSDRFIGDHYRLKQILNNLLSNAIKFTDKGWTALRIKVVSETDDQATLKFSVSDTGLGL 336

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            E     +F RF        R   G GLGLSI +  + L  G + + S
Sbjct: 337 SEKQQSQLFKRFQQANETITREFGGSGLGLSICKQLLALMDGDIGVKS 384


>gi|85710707|ref|ZP_01041771.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
 gi|85687885|gb|EAQ27890.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
          Length = 609

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T +NEA   A E K+SF+  +S+E+R+P+  ++GF +LL  S    L+ +Q+++VE I  
Sbjct: 207 TARNEANAMA-EAKSSFLAKMSHEIRTPMNGVMGFAELLSRS---DLSHEQARHVELIRE 262

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   L  L+NDILDL+ +++G  ++      ++ L+    Q       E  I +      
Sbjct: 263 SGKALQTLLNDILDLSKIESGEFRVKEEPANISHLVKRTIQLFEPLAREKVIGLSSQVSD 322

Query: 676 KLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            L  F + D  RL Q+ S +++NA+ F+ +G   ++     +G   F+V++ G+ IPE+M
Sbjct: 323 TLPQFAMLDALRLRQVLSNLVANAIRFTDRGGVSVIVEPSPSG-IAFTVRDTGTGIPEEM 381

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +++F+ F  +   +  +R G GLGLSI      L GG + + S+
Sbjct: 382 IEAIFDPFSQSDGGNSTRRGGTGLGLSISRQLAELMGGELDVIST 426


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 12/220 (5%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST-ILL 621
            ++ + +K+ F+  VS+ELR+PLT+I G   +L +  L + +S++ + + YI+  ST  L+
Sbjct: 939  KQIERMKDEFISIVSHELRTPLTSIHGSLGMLASGLLKA-DSEEGKRMLYIAVDSTDRLV 997

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRIKVISDGKLG 678
             L+NDILD+  +++G +K+      + DL+ E   V Q++A     N + + +       
Sbjct: 998  RLINDILDIERIESGRVKMEKQCCNVEDLITEAVNVVQALA-----NKVEVTLSVSSLSI 1052

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            S  AD  R++Q    +LSNA+ FS  G  V L   + +   +F VK+ G  IP +  +S+
Sbjct: 1053 SLWADPDRIVQTLINLLSNAIKFSHTGKIVWLTVQQQDRHLLFIVKDEGRGIPTEKLESI 1112

Query: 739  FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F RF  V ++      G GLGL+I  S +  H GH+ + S
Sbjct: 1113 FERFQQVDSSDSRNHEGTGLGLAICRSIVQQHDGHIWVES 1152


>gi|197124838|ref|YP_002136789.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196174687|gb|ACG75660.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 461

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 26/249 (10%)

Query: 545 VTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           VTDS R    L +KN+ L       ++ D +K++F+  +S+ELR+PLT++IG+++++   
Sbjct: 191 VTDSYRE---LQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEG 247

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G L ++Q +Y+  I      LL L+  ILD++ ++AG ++L  S +   D +  ++ +
Sbjct: 248 LGGPLTAEQREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEV---DAVQLMRDA 304

Query: 658 IATKMHENNIR-IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----IL 710
           +AT +     + +KV  D   L    ADR +L Q    + SNA+ F+  G ++     +L
Sbjct: 305 VATLLPIARKKGLKVSCDTTPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVL 364

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
            A R        V ++G  IPE+    VF+ F  V  +   +  G GLGL+IV+SF+  H
Sbjct: 365 PAER----LAIHVVDSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAH 420

Query: 769 GGHVSISSS 777
           GG + + S+
Sbjct: 421 GGEIRVRSA 429


>gi|323700304|ref|ZP_08112216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460236|gb|EGB16101.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1049

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 152/672 (22%), Positives = 280/672 (41%), Gaps = 112/672 (16%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK---NTETEG 230
           + ++LA + LK      +++  + L +++  LVW +D+ G  L+ N  +++    +E E 
Sbjct: 284 MAADLANSALKV-----NMAHLRTLMETMPELVWVKDEEGVFLFCNHRFERLYGASEAEI 338

Query: 231 I--------------VFQ----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
           +               F+    +A+   R    EE   ++         + ET+ T    
Sbjct: 339 VGRTDYDFVDADLADFFRGHDLRAMNSGRPCINEE---QVTYRDDGHVEYLETIKTPLFD 395

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT---YEILHNLTVA-IAIFDQNRYL 328
           ++   K++ VL      G+A D+++   + D+L  +   +++LHN +   I + DQ   L
Sbjct: 396 DDG--KLIGVL------GVARDITERKRIADELKESELRFKVLHNASFGGIFLHDQGVLL 447

Query: 329 QFH-------NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
             +         +  EL  ++   L    + D++ E +R+  + P               
Sbjct: 448 DCNQGLSDITGYTQEELSGMEALDLLAPSARDDVREKIRARFERP--------------- 492

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGE 438
           Y++    +D    P    L +   S P  G +     F ++T +   E +     +    
Sbjct: 493 YETVGLRRDGTCYP----LQIAAKSIPYKGRVVRVVEFRDITERKRAEDELKDSERRHRV 548

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             ++   G+  F  DGRI   N  F  +  +    L     +R       R    +    
Sbjct: 549 IFENSPLGMIRFSRDGRILDCNDRFVEMMGSSREALIGFPMLRASNPDMRRALATA---- 604

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT----MLTFVNVTDSVRAERA 554
             A   ++++D   S  G  E    + L     P+   Q+    + T  + ++  R + A
Sbjct: 605 -IAGSPSAYEDYYSSETGRRE----TFLHVQFNPVNPGQSPTEVIATLEDFSERKRDQDA 659

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E        K  F+ ++S+E+R+PL  I+G   LL ++    L+ +Q++Y     
Sbjct: 660 LRRAKEQAEAFSRSKTEFLTNMSHEIRTPLNGIMGMLQLLHST---GLSREQAEYSGAAL 716

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------KQSIATKMHE-- 664
            SS  L+NL+ DILDL+ V+AG + +      L +   +V         QS  T + E  
Sbjct: 717 QSSRRLMNLLTDILDLSRVEAGKLVVRAVPFDLVETCRQVCDLFKLTSAQSGVTLICELG 776

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----F 719
            N+  +VI D           RL Q+ + +L NA  F++ GS V+      +G       
Sbjct: 777 ENVPRRVIGDAI---------RLQQVLTNLLGNAFKFTATGSIVMAAHRLPDGPSKGYRI 827

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +FSV + G  IP++   ++F+ F  VS  +  + +G GLGLSI  + + L GG +SI S 
Sbjct: 828 LFSVADTGEGIPDEKVDTLFDAFTQVSEGYTRRHQGAGLGLSICRNLVRLMGGTMSIESE 887

Query: 778 DEGVTTINCRIP 789
           +   TT+   +P
Sbjct: 888 EGAGTTLYVALP 899


>gi|260776063|ref|ZP_05884958.1| hypothetical protein VIC_001447 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607286|gb|EEX33551.1| hypothetical protein VIC_001447 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 563

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 10/243 (4%)

Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           LT   EA  +A+E + +   FV  +++ELR+PL  ++G  +LL  +   SL+ +Q   + 
Sbjct: 188 LTNTQEARARAEESERATKEFVAMINHELRTPLNGLLGSAELLADT---SLDEEQRTLLT 244

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +S +   L +++NDILD + + AG+M+L  ST    +L N ++   A K  E  I+  +
Sbjct: 245 NLSHTGDFLRHIINDILDFSKISAGMMELIPSTFAWKELTNMLQGVFANKAQEKGIQFSI 304

Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            S  ++ +F + D  R+ QI   ++ NA+ F+S GS  +    ++N   I SVK+ G  I
Sbjct: 305 HSAPEVPNFLIGDFDRICQILINLVGNAIKFTSAGSVQVEVFWQENNLHI-SVKDTGIGI 363

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     +F+ FV      +R   G GLGL+I ++ I+L  G +S +S     T     I
Sbjct: 364 PEGAKAILFDPFVQADRTAKRNFEGTGLGLAICKNLIDLMKGEISFTSQTGVGTQFKLSI 423

Query: 789 PSK 791
           P K
Sbjct: 424 PLK 426


>gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1310

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 132/243 (54%), Gaps = 14/243 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
           L    EA   A++ K+ F+ ++S+E+R+P+ +IIG + L L+T     LN KQ  Y+E +
Sbjct: 537 LQTAKEAAENANQAKSEFLANMSHEIRTPMNSIIGMSSLALQTP----LNDKQRGYIEKV 592

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S+  LLN++NDILD + ++A  M +     +L  L+++V   +  K+ E  + + +  
Sbjct: 593 SHSAESLLNIINDILDFSKIEARKMDIENVPFMLPSLIHKVAHVLELKIEEKGLELIIDI 652

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNG 727
           D ++    V D  RL QI   + +NA+ F+ +G  +I++AA     +D+    FSV++ G
Sbjct: 653 DAEVPQQVVGDPTRLRQILLNLGNNAVKFTQQGE-IIIRAAHSKNNQDDNIIHFSVQDTG 711

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +D   ++F  F        RR  G GLGL+I +  I L GG + + S +   +T +
Sbjct: 712 IGISKDKQNNLFQSFSQADTSTTRRFGGTGLGLAISKRLIQLMGGDIWVESEENKGSTFH 771

Query: 786 CRI 788
             I
Sbjct: 772 FTI 774


>gi|54298075|ref|YP_124444.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris]
 gi|53751860|emb|CAH13284.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris]
          Length = 827

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 162/316 (51%), Gaps = 22/316 (6%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSV----LEYSIIPLPNAQTMLT 541
           + YY ++D   +   I  S ++      GT +   LS+ V    LE  II +     +  
Sbjct: 207 TSYYKKADKIVMDKGIPLSLEEPFYCPDGTTKETYLSNKVPLRDLEGKIIGM-----LGV 261

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++TD  + E  L++  EA  +A+ +K  F+ ++S++LR+PL+ ++G  +L+K      
Sbjct: 262 SVDITDRKKMELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSGVVGMAELMKEQVTDP 321

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   Q QY E+I   S  LL+L++ ILD+ ++ +    +L  +T  +N+ + E+      
Sbjct: 322 V---QVQYAEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTFDINECIAELVHLEMP 378

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
            +    + + V  D K+   +  DR +L +I   +L NA+ F+  G   I    L+   +
Sbjct: 379 SIKLKQLDLIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDSGYIAIDVKLLELNNE 438

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +G   F++ + G  IPE+    +F+RF  +  +  G+ +G G+GL IV+S++NL GG + 
Sbjct: 439 SGLIYFAISDTGIGIPENQQTKIFDRFHRIIPSSIGKYKGHGVGLHIVQSYVNLLGGEIQ 498

Query: 774 ISSSDEGVTTINCRIP 789
           ++S     TT    +P
Sbjct: 499 VNSEPGVGTTFYFELP 514


>gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 1167

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 9/233 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPKENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNI 667
           E I ++   LLNL+NDILD++ V+AG +++   N S   L + L  + Q +AT   E  +
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAT---EKKL 592

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +FSV+++
Sbjct: 593 AFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMIVSRQPGAGIVFSVRDS 652

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           G  I  +  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 653 GIGIAPEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|254694275|ref|ZP_05156103.1| sensory box histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|261214583|ref|ZP_05928864.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 3 str. Tulya]
 gi|260916190|gb|EEX83051.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 3 str. Tulya]
          Length = 1035

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1152

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 11/221 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           NEA   A+  K+ F+ ++S+E+R+P+  IIG   LL  +    L+ +Q+ +V+ +  S+ 
Sbjct: 503 NEAF-VANNAKSQFLANMSHEIRTPMNGIIGMAALLLDT---PLDGQQTVFVQTVRKSAH 558

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L+ ++NDILD + V+AG ++L  +   L   L  +   +A K HE  +    I    + 
Sbjct: 559 ALVTIINDILDFSKVEAGKLELEEAPFSLQAELEAMGDVLAVKAHEKGLEYACIMHPDVP 618

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNG--DFIFSVKNNGSSIPED 733
            + + D  RL Q+   I+ NA+ F+  G  S  I  AA D+     +FS+K+ G+ +PED
Sbjct: 619 DALIGDSIRLRQVLVNIVGNAVKFTDAGEVSLEISMAAMDDARCTLLFSIKDTGAGLPED 678

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
             ++VF  F        R+  G GLGL+I +S + L GG +
Sbjct: 679 KIETVFEAFAQADSSVTRKFGGTGLGLAISQSLVRLMGGEI 719


>gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 864

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 128/255 (50%), Gaps = 28/255 (10%)

Query: 547 DSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTNII 588
           +S    R L++ NE L+K                  A+  K+ F+ ++S+ELR+PL+ II
Sbjct: 172 ESAELYRLLSQDNERLQKLVEKRTAELERARDQAEGANRAKSQFLANMSHELRTPLSGII 231

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  DLL  ++L   +++Q +Y    S S+  LL L+NDILD + ++AG +++  +   L 
Sbjct: 232 GMVDLLLDTRL---DNEQQEYARLASDSAHALLALINDILDFSKIEAGKLEIEEAEFSLG 288

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
            L   V +  A    +  I +    D +L ++V  D  RL Q+ + +LSNA+ F+ KGS 
Sbjct: 289 SLTEGVTELFALAAQKKGIVLTSYVDPQLPAYVRGDALRLRQVLANLLSNALKFTEKGSV 348

Query: 708 VI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            + +K   D G      F V + G  +  ++ + +F  F        R+  G GLGL+I 
Sbjct: 349 QLQVKILGDGGQAPLIRFEVCDTGIGVDAEVAERLFQSFTQADSSTTRKYGGTGLGLAIC 408

Query: 762 ESFINLHGGHVSISS 776
            + + L GG + I S
Sbjct: 409 RNLVELMGGEIGIES 423


>gi|218708513|ref|YP_002416134.1| aerobic respiration control sensor protein ArcB [Vibrio splendidus
           LGP32]
 gi|218321532|emb|CAV17484.1| aerobic respiration control sensor protein ArcB [Vibrio splendidus
           LGP32]
          Length = 795

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  IIG + +L  S+L +   KQ Q 
Sbjct: 264 RDITERKEHQESLEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQLTTEQRKQMQT 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S+  L N+ NDI+D+   D   ++L  + I   D + E++   A    +  +R 
Sbjct: 324 ---IKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVVEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L S V  D  RL Q+   ++SNAM F+  G  V+  +A  +GDF   +  V++
Sbjct: 381 DLERLSDLPSAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSAEIDGDFANIMMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++ +  IN+  GH+ + +S+EG  
Sbjct: 441 TGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLINMMDGHIEV-TSEEGFG 499

Query: 783 ---TINCRIP 789
              T++ R+P
Sbjct: 500 STFTVSIRVP 509


>gi|254472050|ref|ZP_05085451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp.
           JE062]
 gi|211959252|gb|EEA94451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp.
           JE062]
          Length = 744

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 131/244 (53%), Gaps = 7/244 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610
           E+   EK  A   A++ K+ F+ ++S+ELR+PL  IIGF++++     G L S K  +Y 
Sbjct: 486 EKYADEKTRA-EDANQAKSEFLANISHELRTPLNAIIGFSEIMDQGMFGDLGSDKYKEYC 544

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S   LLN++NDILD++ ++AG ++L+   + +  ++ +  + I+    E NI++ 
Sbjct: 545 KDIHSSGNYLLNVINDILDMSKIEAGRIELSVEDVQIQQIVQDAARIISATAAEKNIKV- 603

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
           V  +       ADR+ + QI   +L+N++ F+ +   V + +AR  G F    + +NG  
Sbjct: 604 VNENLPHMHLQADRRAVKQILLNLLANSVKFTPENGEVRV-SARKVGAFAELKITDNGIG 662

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I +     +   FV   N      +G GLGL+I  S   LHGG++ I S     T +  +
Sbjct: 663 IAKKDIDRLAKPFVQVENQFTKTHKGSGLGLAIARSLSELHGGYMEIDSEVGKGTEVTIK 722

Query: 788 IPSK 791
           +P K
Sbjct: 723 LPLK 726


>gi|261407834|ref|YP_003244075.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261284297|gb|ACX66268.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 893

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 128/245 (52%), Gaps = 16/245 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L +  + L K+ + K+ F+ ++S+ELR+PL +++  + +L  +K G+L  ++  Y 
Sbjct: 479 AASELEKYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQHYA 538

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S + LLNL+NDILDL+ V+AG M++    + L +L   ++   +      N+   
Sbjct: 539 TVIHNSGSELLNLINDILDLSKVEAGKMQIEMDLVNLTELPELMEGYFSKSAESKNLEFD 598

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI----- 720
           + ++D       +D  RL QI   +LSNA+ F+  GS V LK  + N     DFI     
Sbjct: 599 IEVADDLPDMMYSDGMRLHQILRNLLSNAIKFTESGS-VKLKVKKMNSIVTSDFIISGDV 657

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV++ G  I  +  + +F  F        RR  G GLGLSI      L GG++++  
Sbjct: 658 IAFSVEDTGIGIAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITV-E 716

Query: 777 SDEGV 781
           S+EG+
Sbjct: 717 SEEGI 721


>gi|315122143|ref|YP_004062632.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495545|gb|ADR52144.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 806

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 127/238 (53%), Gaps = 10/238 (4%)

Query: 557 EKNE------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QY 609
           EKNE         K +  KN F+  VS+E+R+PLT IIGF++++K  + G + S +  +Y
Sbjct: 559 EKNELYHAKKMAEKENSHKNDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPVGSPRYIEY 618

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             YI  S  ++L++VND+LD++ +++G M  ++ ++ LN+ ++E    +    +E  I +
Sbjct: 619 ANYIDRSGNLVLDIVNDLLDISKIESGKMNFHFESVSLNETISEAISLMELYANEKRILV 678

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGS 728
           +      +    AD + + QI   ILSNA+ F+  G  +++  A   N + +  VK+ G 
Sbjct: 679 RTSFSNDIPPIFADLRSIKQIALNILSNAIHFTPSGGQIVISTAYTRNKEVVLRVKDTGI 738

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            + +   +     F  + N+ + +  G GLGL + ++ ++ + G  S+ S+    T I
Sbjct: 739 GMTDYELEKAMKPFGQIPNSQQVRGEGTGLGLPLTKAMVDANMGKFSVFSTPSKGTLI 796


>gi|149198158|ref|ZP_01875205.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149138760|gb|EDM27166.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 640

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 166/326 (50%), Gaps = 38/326 (11%)

Query: 474 LSPGTHIRNIAATCSRY--YN---ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +SP  H+ + A   S+Y  YN   E  G D    +  SF++    +Q   + ++      
Sbjct: 181 ISPLVHLSDTARKISQYHTYNIRAEYKGKDEIGDLTYSFNEMLTEIQAREDTINRE---- 236

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAE----RALTEKNEAL--RKADEIKNSFVQHVSYELRS 582
                 NA+          +V AE    RA  E ++ L    A+++K+ F+ +VS+E+R+
Sbjct: 237 ----RHNAEQR--------AVEAEEANKRAKVEFDQRLVAESANKMKSEFLANVSHEIRT 284

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  I+GF++LL+      ++ K  +YVE I++S   LL+L+NDILDL+ V+AG ++L Y
Sbjct: 285 PMNAILGFSELLEKE---DIDKKSMEYVEAINSSGRSLLHLINDILDLSKVEAGKLELIY 341

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDF 701
           + + L  L+NE     + +  + N+   V  D  +   V+ D  R+ QI   ++ NA+ F
Sbjct: 342 TKVDLRSLVNEFASVFSREFAKKNLDFLVEVDQVVPDLVSLDEVRIRQILFNLIGNAVKF 401

Query: 702 SSKGST-VILKA-ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           + +G   V +KA  + NG  D  F V + G  I E+  + +F  F   S     +  G G
Sbjct: 402 TEEGYVKVAIKADLKRNGVVDLDFVVSDTGVGIGEEANRRIFGAFNQASAEISKEYGGTG 461

Query: 756 LGLSIVESFINLHGGHVS-ISSSDEG 780
           LGLSI +    L GG ++ +S+  EG
Sbjct: 462 LGLSICKELSQLMGGSINLVSAKGEG 487


>gi|75675405|ref|YP_317826.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420275|gb|ABA04474.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 536

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G    +   
Sbjct: 244 EQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYK 303

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ E    +  +     I
Sbjct: 304 TYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGI 363

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
            I  I +  +     D +   QI   +LSNA+ F+ +G  + LK     +G    SVK+N
Sbjct: 364 TIHEIFEQGMPRIWGDERATRQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVKDN 423

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           GS I ED    V   F   SN+ +   +G GLGL I +S I++HGG  ++ S
Sbjct: 424 GSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRS 475


>gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
 gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
          Length = 907

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 133/244 (54%), Gaps = 13/244 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EKN++++ +   K+ F+ ++S+ELR+PL +I+  + +L  +  G+L+ KQ ++ E I 
Sbjct: 488 LEEKNKSIQLSSRYKSEFLANMSHELRTPLNSILILSQMLSENANGNLSKKQIEHAETIY 547

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL+L+NDILDL+ +++G +++    + + D+   V++       +  ++      
Sbjct: 548 SSGKDLLDLINDILDLSKIESGKVEVYPEELFIEDMRAFVERQFHPIAEQKGLQFNCYIH 607

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIP 731
            +  S +  D QRL QI   +LSNA  F+++G+    +  +  ++   +FS+ + G  IP
Sbjct: 608 QETPSILYTDDQRLKQILKNLLSNAFKFTAQGTVRFEVHPSYSESTKVVFSIIDTGIGIP 667

Query: 732 EDMCKSVFNRFVSNAHRG------QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            +  +SVF  F    H+G      +  G GLGLSI     NL GG + + S D   +T +
Sbjct: 668 PEKQESVFEAF----HQGDGTTTREYGGTGLGLSISRELANLLGGRIEVVSEDGKGSTFS 723

Query: 786 CRIP 789
             +P
Sbjct: 724 LYLP 727


>gi|27378251|ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351398|dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 776

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 142/275 (51%), Gaps = 15/275 (5%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D  L  ++I L  +Q  L       +  AE+   EK  A  +A++ K+ F+ ++S+ELR+
Sbjct: 495 DLRLRATVIDLKRSQAALERQTNELADLAEKYQREKTRA-EEANQTKSKFLANMSHELRT 553

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           PL  IIGF++++ +   G L S++ Q Y + I  S   LL ++NDILD++ ++AG MKL+
Sbjct: 554 PLNAIIGFSEIMGSGLFGELGSEKYQEYCQDILTSGHYLLEVINDILDMSKIEAGRMKLD 613

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L   L E  + ++ +  + ++ +    +  + S VADR+   QI   +LSNA+ F
Sbjct: 614 MEELDLARTLAESLRVVSGRAQDKHLTLDADIEKSI-SVVADRRATKQIIVNLLSNAVKF 672

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCK------SVFNRFVSNAHRGQRRGV 754
           +  G  +++++ + +   +  + + G  I P  + +       V ++     H     G 
Sbjct: 673 TPDGGRIVVRSRQLDDRIVLMIADTGIGIAPHSLARLGRPFEQVESQLTKTYH-----GS 727

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I  S   LHGG + + S  +  T +   +P
Sbjct: 728 GLGLAIARSLAQLHGGSMRLRSKIDVGTVVRVTLP 762


>gi|329849064|ref|ZP_08264092.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328844127|gb|EGF93696.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 703

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 9/246 (3%)

Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           RAE  + E  +A RKA+E    K  F+ ++S+E+R+P+  IIG   LL  S+   L ++Q
Sbjct: 313 RAEN-IRELTQARRKAEEASLAKTEFLANMSHEIRTPMNAIIGIGTLLAMSQ--PLTARQ 369

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++V+ ++ S+  LL L+ND+LD+A ++A  ++L      L  +L EV   +  +  E  
Sbjct: 370 QEFVKTLNVSAKGLLELINDLLDVAKIEAHTVELEEVPFSLEQILLEVASMMTVRSREKG 429

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +      D   G +F  D  RL QI   + SNA+ F+  G   I  A         SV++
Sbjct: 430 LTFTTAIDSIRGRTFAGDPMRLRQIVLNLCSNAVKFTQTGGVEIRVACGAEDSVAISVRD 489

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +   ++F++FV   +   R+  G GLGL+I  +   L GG ++I S     +T
Sbjct: 490 TGIGIAPENLSTIFDKFVQADNSISRKYGGTGLGLAITRNLAELMGGAIAIDSQPGHGST 549

Query: 784 INCRIP 789
               +P
Sbjct: 550 FTVTLP 555


>gi|171058148|ref|YP_001790497.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775593|gb|ACB33732.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1135

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 130/241 (53%), Gaps = 12/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NV   + + RA T+++ A   A+  K++F+ ++S+E+R+P+  IIG   L++ S    + 
Sbjct: 628 NVAFGIESFRARTQRDAA-EGANRAKSAFLANMSHEIRTPMNAIIGLNYLVRRS---GVT 683

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+  +E + ++   LL+++NDILDL+ ++AG ++L  +   L D+++ V+  IA    
Sbjct: 684 PEQAARLEKVDSACQHLLSIINDILDLSKIEAGRVQLECTHFRLGDIIDNVQSIIAEPAR 743

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI- 720
           +  + I V  D +      D  RL Q      SNA+ F+ KGS + L+A   +D GD + 
Sbjct: 744 DKGLAIDVSGDAQALWLRGDPTRLRQALLNYASNAVKFTDKGS-ISLRAELLQDGGDELL 802

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSVK+ G  I  +    +F  F        R+  G GLGL+I +  + L GG V + S
Sbjct: 803 LGFSVKDTGIGIEPEQIGRLFQAFEQADVSTTRKYGGTGLGLAITQRLVRLMGGEVGVDS 862

Query: 777 S 777
           +
Sbjct: 863 T 863


>gi|322421479|ref|YP_004200702.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320127866|gb|ADW15426.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 484

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 27/238 (11%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K+ F+ ++S+ELR+PL +++GF++LL     G LN+KQ +YV+ I  S   LLNL
Sbjct: 226 EASRAKSDFLANMSHELRTPLNSVLGFSELLTDELFGHLNAKQHEYVKNILFSGRHLLNL 285

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGKLGSF 680
           +NDILDL+ V+AG   L  S +   +++     + Q  A K H+ ++ +++  D  +   
Sbjct: 286 INDILDLSKVEAGKSVLEPSMVKFREVIAGTLTLLQEKALK-HDVHLGLELPVDCDI-EL 343

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------------------DNGDFI- 720
           +AD ++L QI   +LSNA+ F+  G T+ + A R                   +  DF+ 
Sbjct: 344 MADERKLKQIMFNLLSNAVKFTPAGGTIRVTAQRMSRSDLLAAGKYQPGERQPEAEDFVE 403

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +V+++G  I  +    +F  F  + + +  +  G GLGL++ +  + LHGG V + S
Sbjct: 404 ITVEDSGIGIKREDIPKLFKEFSQLDSPYTKEYEGTGLGLALTKRLVELHGGQVGVES 461


>gi|254689786|ref|ZP_05153040.1| sensory box histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|256258039|ref|ZP_05463575.1| sensory box histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260755316|ref|ZP_05867664.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 6 str. 870]
 gi|260884335|ref|ZP_05895949.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 9 str. C68]
 gi|297248868|ref|ZP_06932586.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5
            str. B3196]
 gi|260675424|gb|EEX62245.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 6 str. 870]
 gi|260873863|gb|EEX80932.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 9 str. C68]
 gi|297176037|gb|EFH35384.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5
            str. B3196]
          Length = 1035

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|182678851|ref|YP_001832997.1| response regulator receiver sensor signal transduction histidine
           kinase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634734|gb|ACB95508.1| response regulator receiver sensor signal transduction histidine
           kinase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 389

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 4/242 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
           AL    E    A++ K++F+  +S+ELR+PL  IIGF++L+    +G L N +  +Y+  
Sbjct: 137 ALRLAKEGAEAANQAKSNFLATISHELRTPLNAIIGFSNLILMELMGPLSNERYREYLRD 196

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+AS   LL+++NDILDL   +AG  +L  S I   D +  V++ +  K  E  + +   
Sbjct: 197 INASGEHLLSIINDILDLTKAEAGQTELFESVIHPRDAIIPVERLLMPKAREAGLTLTSN 256

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIP 731
               L    AD ++  QIF  +LSNA+ F+  G ++ + A     GD   +V + G  I 
Sbjct: 257 ITEHLPLLRADERKAKQIFLNLLSNAVKFTPPGGSIEIDAHLTHKGDLAIAVADTGIGIA 316

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    V   FV       RR  G GLGL +V+SF+ LH G + + S     T      P
Sbjct: 317 PEHIDRVCEPFVQIDSSLSRRHDGTGLGLPLVKSFMELHEGSLHLRSKSGIGTCAIVTFP 376

Query: 790 SK 791
           +K
Sbjct: 377 AK 378


>gi|162455496|ref|YP_001617863.1| two component sensor kinase [Sorangium cellulosum 'So ce 56']
 gi|161166078|emb|CAN97383.1| two component sensor kinase [Sorangium cellulosum 'So ce 56']
          Length = 520

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 3/233 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T    AER      +     D  +++F+  +S+ELR+PL  I+GF  +L++   G L+ 
Sbjct: 241 ITRFAAAERTYRADLQQASAMDRERSAFLAGLSHELRTPLNAILGFAHVLESEVDGPLSQ 300

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              + +  I  S   L  L++DILDL+ ++ G ++L+   + L  L+++V +  +    +
Sbjct: 301 DAREALSVIRQSGEHLRTLIDDILDLSALETGKLQLSRRAVNLRALVDQVMREASAAARD 360

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             ++++V  D  L +  AD +R+ QI + ++SNA+ F+++GS  +    R     I  V+
Sbjct: 361 KPLQLRVTGDHALVAH-ADPRRVRQILTNLVSNAVKFTARGSVTVNITGRGRYAAIV-VQ 418

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  IP +   +VF  +      R +R G GLGLSI    + +HGG + + S
Sbjct: 419 DTGPGIPPEETSAVFEEYRQTGDVRSRRAGTGLGLSIARRLVLMHGGTIQLES 471


>gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1062

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 140/259 (54%), Gaps = 11/259 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T V++ +  R++  L         A++ K+ F+ ++S+E+R+PL  I+G   LL+T++  
Sbjct: 660 THVDINERKRSQADLLSAKLQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE-- 717

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             N +Q++Y+   + S+  L  L++DILD++ ++AG M +  +   +  L + +++   T
Sbjct: 718 -PNEEQNEYLTGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFYT 776

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +     + +  I D +L +  + D  RL QI   ++ NA+ F+ KG  ++  +   N +F
Sbjct: 777 EAQGKGLVLDFIWDDELPTVLIGDEARLRQILFNLVGNAIKFTDKGEVLVEVSLLPNSNF 836

Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHV 772
                +F+V + G  I E+  K +F  FV    ++  + +G GLGLSIV   +++ GG +
Sbjct: 837 SSVRVLFTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLVSILGGDI 896

Query: 773 SISSSDEGVTTINCRIPSK 791
           SI S+    TT+   +P K
Sbjct: 897 SIDSALGEGTTVYLSLPLK 915


>gi|225853078|ref|YP_002733311.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457]
 gi|256045221|ref|ZP_05448119.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|256114174|ref|ZP_05454928.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str.
            Ether]
 gi|256263438|ref|ZP_05465970.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565182|ref|ZP_05835666.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|265991654|ref|ZP_06104211.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 1 str. Rev.1]
 gi|265995492|ref|ZP_06108049.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 3 str. Ether]
 gi|223635641|sp|Q8YIM6|PDHS_BRUME RecName: Full=Cell-division control histidine kinase pdhS
 gi|225641443|gb|ACO01357.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457]
 gi|260151250|gb|EEW86344.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|262766605|gb|EEZ12394.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 3 str. Ether]
 gi|263002438|gb|EEZ15013.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 1 str. Rev.1]
 gi|263093447|gb|EEZ17497.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409621|gb|ADZ66686.1| PAS domain S-box-containing protein [Brucella melitensis M28]
 gi|326539324|gb|ADZ87539.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 1035

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 501

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 170/360 (47%), Gaps = 33/360 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I+ +++GV V   D  + L NPA   L +       PG          S Y +++   + 
Sbjct: 154 INCMADGVLVTNRDLEVVLCNPALMRLLELSTPPPQPGP--------LSFYLDDTSLKEA 205

Query: 500 FAAIITSFDDE------RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
              ++T+ + +      ++  +G   L + S   Y     P+ Q +L  V V   +    
Sbjct: 206 IYTLLTAPEQDNITYISQELRKGRAYLRALSAPFYG----PDLQ-LLGVVTVFHDITG-- 258

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                    ++ DE+KN FVQ VS+ELR+PL+ I     ++     G L  KQ + +   
Sbjct: 259 --------FKELDEMKNEFVQMVSHELRAPLSAIKMQHTVILDGLAGDLTEKQRELLVRA 310

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A    LL+L+N++L++A ++AG  +L    + L  +L ++ + + TK     I +++I+
Sbjct: 311 HAKIQGLLDLINELLNVARMEAGYCQLEQVPLSLGGVLTDLVELLQTKAANQKIVLQLIT 370

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
              L    ADR+ + ++F  +L NA+++S  G  V + A   +      V + G  + PE
Sbjct: 371 PPDLPLIQADRRSMEEVFMNLLCNAINYSPNGGNVKISAVSHSEYLEVLVSDTGVGLEPE 430

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++ K +F++F    H   R+  G GLGL+IV++ I  H G + + S     TT    +P+
Sbjct: 431 EIPK-IFDKFYRAKHPQTRQVIGTGLGLAIVKNLIEAHRGSIQVESQPGVGTTFRVLLPT 489


>gi|304312202|ref|YP_003811800.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
 gi|301797935|emb|CBL46157.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
          Length = 913

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 134/260 (51%), Gaps = 11/260 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+   T++   D+  + R L + N+ L  A + ++ F+ ++S+E+R+P+  ++G  +L++
Sbjct: 505 AEARQTYIQQLDT--SNRQLDKSNQELAAAIQARSEFLANMSHEIRTPMNGVLGMLELVE 562

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   +LN  Q Q +E    S   LL L+NDILDL+ +++G + L      L D L++++
Sbjct: 563 NA---NLNDVQKQQLEIARRSGQTLLALINDILDLSKIESGKLALESLPFSLQDFLSDLR 619

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +    ++ E NI   +     +  +VA DR RL Q+ + ++SNA+ F+  G   I     
Sbjct: 620 ELYGKQLREKNITCTLACAEDVPEWVAGDRIRLWQVLTNLVSNAVKFTKDGGVTISVNLL 679

Query: 715 DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
             G      F V + G  IP+     +F+ F        R+  G GLGL+I ++ + L G
Sbjct: 680 QEGQEERLSFQVTDTGIGIPKAAQAKIFDSFSQADGSTTRKYGGTGLGLTIAQNLLKLMG 739

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +S+ S +   +T    +P
Sbjct: 740 GAISVRSEEGEGSTFAFSMP 759


>gi|260171368|ref|ZP_05757780.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315919679|ref|ZP_07915919.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693554|gb|EFS30389.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 637

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 134/248 (54%), Gaps = 9/248 (3%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P    + +    ++ D +   + L E       AD++K+ F+ ++S+E+R+PL  I+G
Sbjct: 245 IAPFEGNRVLALIHDIGDRILRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVG 304

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++++  ++      ++ +Y+E I  +S +LL L+NDILDL+ +++G  ++++  + +  
Sbjct: 305 FSEIIAVTEG---EEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAG 361

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ EV++    KM ++N+ +KVI          DR R++Q+    LSNA+  + KGS  +
Sbjct: 362 LVEEVEKVHQLKM-KSNVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGSITL 420

Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
               +  G ++   V + G  I ++    +F RF       Q  G GLGLSI +S +   
Sbjct: 421 --GLKHEGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ--GTGLGLSICKSIVERL 476

Query: 769 GGHVSISS 776
           GG + ++S
Sbjct: 477 GGRIEVTS 484


>gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
 gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
          Length = 1014

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 503 LCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 562

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E   + 
Sbjct: 563 ---LSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAY 619

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   I     KAA
Sbjct: 620 APLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAA 679

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + GG 
Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  +  TT+   +P +E
Sbjct: 740 IEIDSLPDFGTTVTVALPLRE 760


>gi|62290486|ref|YP_222279.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82700409|ref|YP_414983.1| PAS/histidine kinase/ATPase domain-containing protein [Brucella
            melitensis biovar Abortus 2308]
 gi|189024711|ref|YP_001935479.1| sensory box histidine kinase [Brucella abortus S19]
 gi|237815994|ref|ZP_04594991.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|254697930|ref|ZP_05159758.1| sensory box histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730820|ref|ZP_05189398.1| sensory box histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260547015|ref|ZP_05822754.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|260758539|ref|ZP_05870887.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 4 str. 292]
 gi|260762362|ref|ZP_05874705.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 2 str. 86/8/59]
 gi|75496411|sp|Q57BR6|PDHS_BRUAB RecName: Full=Cell-division control histidine kinase pdhS; AltName:
            Full=PleC-divJ homolog sensor
 gi|123768481|sp|Q2YRB4|PDHS_BRUA2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|223635608|sp|B2S758|PDHS_BRUA1 RecName: Full=Cell-division control histidine kinase pdhS
 gi|62196618|gb|AAX74918.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616510|emb|CAJ11577.1| PAS domain:ATP-binding region, ATPase-like:Histidine kinase A,
            N-terminal:Bacterial sensor protein, C-terminal:Histidine
            kinase [Brucella melitensis biovar Abortus 2308]
 gi|189020283|gb|ACD73005.1| sensory box histidine kinase [Brucella abortus S19]
 gi|237789292|gb|EEP63503.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|260096065|gb|EEW79942.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|260668857|gb|EEX55797.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 4 str. 292]
 gi|260672794|gb|EEX59615.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 2 str. 86/8/59]
          Length = 1035

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|301162819|emb|CBW22366.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis 638R]
          Length = 639

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R++ AL E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L +   GS    Q
Sbjct: 399 DLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GSSEEDQ 456

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S+     E+ 
Sbjct: 457 RNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSSVEMSRRESG 516

Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723
            R   + + K  SFV   D QRL Q+   +L+NA  F+  G+ T+  +  ++    +F+V
Sbjct: 517 NRF--VFETKTDSFVLQTDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 574

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I    E
Sbjct: 575 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWIDPDYE 628


>gi|254456902|ref|ZP_05070330.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
 gi|207085694|gb|EDZ62978.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
          Length = 1175

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 183/387 (47%), Gaps = 31/387 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q +LE ++           D+++EG+ V    G +  SN +  +L +  ++ L     
Sbjct: 399 TKQKELEERFQDQANFLNSITDNITEGLMVIDDTGNLIYSNKSASTLLEQRDDELLDSNF 458

Query: 480 -----IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSII 531
                + N   T S++    D     + ++ S D   K+  G    +E+ + SVL ++  
Sbjct: 459 YSDVLVENENITLSKF----DSLMKKSGVLHSDDVLFKTKNGKNIDIEMSAVSVLRHNKK 514

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            L     ++ F +++D    + +L E      +A + K++F+ ++S+ELR+PL  IIG +
Sbjct: 515 SL-----IVVFKDISDRKILQDSLIEAKLIAEEASKTKSNFLANMSHELRTPLNGIIGMS 569

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +         + +   Y++ I  S  ILL ++NDILD + ++AG + +      L+D+L
Sbjct: 570 YIALNQ---DTDPRIKNYLDKIHTSGNILLKIINDILDFSKIEAGKLDVESIEFNLDDML 626

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----- 705
            ++   I  K +E ++ + +  D     S + D  R+ QI   +LSN++ F+  G     
Sbjct: 627 KKLSDFIHLKAYEKDLELVIFKDQNTPTSVIGDPLRINQILLNLLSNSIKFTDHGEIEIS 686

Query: 706 -STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
              +IL AA  +   +F++++ G  + ++    +FN F        RR  G GLGL+I +
Sbjct: 687 VEALILDAA--DSKLVFTIRDTGVGMTKEELDRIFNSFSQADSTIARRYGGTGLGLTITK 744

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             I L  G++S+ S     TT    +P
Sbjct: 745 QLIELMDGNISVESEKGVGTTFKVELP 771


>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1346

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 140/288 (48%), Gaps = 46/288 (15%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAER----------ALTEK---NEALRK------------- 564
           IPL   +  L FV + DSVR+ R          AL  K   N  LR+             
Sbjct: 565 IPLMGPEGCLGFVGL-DSVRSTRTWSDSEINLFALLAKLLVNAQLRQSREQDLKDAMEQA 623

Query: 565 --ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A + K+ F+ ++S+E+R+P+  +IG TDLL  ++L     +Q    E I +S   LL 
Sbjct: 624 EIATQAKSEFLANMSHEIRTPMNGVIGMTDLLLDTEL---RPEQRSLAESIQSSGEALLA 680

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+NDILD + ++AG ++L      L+ LL ++   +A +  E  + +  + D  + + V 
Sbjct: 681 LINDILDFSKIEAGRLELESVNFNLHYLLEDLASLMAVRADEKGLELICLPDPDVPAQVQ 740

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAAR--------DNGDFIFSVKNNGSSI 730
            D  RL QI + ++ NA+ F+ +G  V++     AR        D+   +F+V++ G  +
Sbjct: 741 GDPGRLRQILTNLVGNAIKFTHQGEVVVMVQKSEARSQKSDNSADDVLLLFTVQDTGIGV 800

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           PED    +FN+F        R+  G GLGL+I      + GG V + S
Sbjct: 801 PEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQS 848


>gi|219847057|ref|YP_002461490.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219541316|gb|ACL23054.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 763

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 4/233 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E ++ AD +K +F+  VS+ELR+PLT+IIG+TD+L+   LG L+ +  + + Y+  +S  
Sbjct: 518 EQVQHADRLKTTFLATVSHELRTPLTSIIGYTDVLRRGILGELSPEVQETLGYMRQASLN 577

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+  +NDIL+ + ++AG + +    + +  ++  V   +  +  E ++ + V     +  
Sbjct: 578 LMRQINDILEFSRIEAGQLSIEIEPVEVGAIIQNVVGQMLPQARERDLTVNVTIPPDIPQ 637

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738
             A+  RL Q+   +LSNA+ F+     + +           +VK++G  I PED  + +
Sbjct: 638 IAANIGRLEQVLINLLSNAIKFNRPQGWIEISVEPRGAWLRINVKDSGVGIAPEDQ-ERI 696

Query: 739 FNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F  + +  G+R  GVGLGL+I    I   GG + ++S+    +   C +P
Sbjct: 697 FAEFQRARSPNGERVHGVGLGLAICRRLITHMGGTIGVTSTPGEGSVFYCDLP 749


>gi|254714821|ref|ZP_05176632.1| sensory box histidine kinase [Brucella ceti M644/93/1]
 gi|254717879|ref|ZP_05179690.1| sensory box histidine kinase [Brucella ceti M13/05/1]
 gi|261219725|ref|ZP_05934006.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M13/05/1]
 gi|261322615|ref|ZP_05961812.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M644/93/1]
 gi|260924814|gb|EEX91382.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M13/05/1]
 gi|261295305|gb|EEX98801.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M644/93/1]
          Length = 1035

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
 gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
          Length = 889

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 6/240 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  ++ E+AL    E   ++ + K+ F+ ++S+E+R+P+  I+G   LL+      +N
Sbjct: 506 DLTQQIKHEQALAHAKELAEQSSKTKSEFLANMSHEIRTPMNGILGTLQLLQEQ---PMN 562

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K + Y++    S+  L  ++NDILD + ++AG + L      L++L++ ++  +     
Sbjct: 563 DKSTDYLKKALYSTRSLTTIINDILDFSKIEAGKLSLEQKVFELDELIHHLESDLLVPAQ 622

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E NI +K  S      +  D  R+ Q+F  I+ NA+ F+ KG   +     D+      V
Sbjct: 623 EKNIYLKFKSTIHHKYWRGDAVRIRQVFLNIIYNAIKFTHKGGVTVEFKLTDDEQVCAIV 682

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP+++   +F RF        R   G GLGL I +S INL  G + + +S+EGV
Sbjct: 683 SDTGIGIPKNVVNRLFERFEQAESSTTREYGGTGLGLPITKSLINLMDGDIKV-TSEEGV 741


>gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 968

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 127/231 (54%), Gaps = 3/231 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + +++KN FV  VS+E+R+PLT I G  ++L T  L     +  Q ++   ++S  LL L
Sbjct: 738 EVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEAEQMLKIAVSNSERLLRL 797

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVA 682
           VN+IL+L  +D+G M+LN     +N ++ +  +++     +N+I I   + D      +A
Sbjct: 798 VNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQNSIEISYSALDVPNTKILA 857

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D + ++Q+ + +LSN++ FS  G+ V +     + + I +VK+ G  +P    +++F RF
Sbjct: 858 DEETIIQVLTNLLSNSVKFSHAGTKVEIYVTMGDKEIIVAVKDYGKGVPPHKLETIFERF 917

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +   Q+ G GLGL+I ++ +  H G + + S  +  +T    +P +
Sbjct: 918 EQVDVSDSRQKGGTGLGLAICKNIVQKHQGKIWVESILDSGSTFYFTLPQQ 968


>gi|256061652|ref|ZP_05451791.1| sensory box histidine kinase [Brucella neotomae 5K33]
 gi|261325661|ref|ZP_05964858.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            neotomae 5K33]
 gi|261301641|gb|EEY05138.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            neotomae 5K33]
          Length = 1035

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472]
 gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 1480

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 9/248 (3%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            A+ +    +++     E+ L +  EA  KA+  K +FV ++S+E+R+P+  I+G   LL 
Sbjct: 862  ARVIAFLTDISRRKETEQTLVQAKEAAEKANLAKTAFVANMSHEIRTPMNAILGMVYLLS 921

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                G L+++Q   ++ I  S+  LLNL+NDILDL+  D G ++L  S   L  L  +V 
Sbjct: 922  Q---GRLSAQQQHQLDTIDRSARHLLNLINDILDLSKADVGKLQLALSDFDLARLPADVM 978

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
              +A +     +++ + +D        D  RL Q    +LSNA+ F+ +G   I  +   
Sbjct: 979  GLVADQAKAKGLQLSLQADAGPLPVRGDATRLTQCLLNLLSNAVKFTERGRIAISLSIDG 1038

Query: 716  NGDF----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
              ++     F V++ G  IP ++   +F  F        RR  G GLGL+I +    L G
Sbjct: 1039 EDEYGVLARFEVRDTGIGIPAEVQPRLFGAFEQADASTTRRYGGTGLGLAITKRLAELMG 1098

Query: 770  GHVSISSS 777
            G V + S+
Sbjct: 1099 GAVGVESA 1106


>gi|320012334|gb|ADW07184.1| histidine kinase [Streptomyces flavogriseus ATCC 33331]
          Length = 593

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 128/243 (52%), Gaps = 7/243 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR+A E K  F  +VS+ELR+P+ +++G   LL  +    L+ +Q + V  IS
Sbjct: 208 LDEKSRQLREASEAKTRFWANVSHELRTPVNSVVGLARLLNDAGSDGLDEEQRRQVSLIS 267

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   LL LV+++LD+A  ++G ++ + + + L  +L +++ ++     +  + + V + 
Sbjct: 268 ASGATLLALVDELLDVAKAESGRLEPHMAQVDLRAVLGQLRGTLKGYGAQGEVELSVATS 327

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGD-FIFSVKNNGSSIP 731
           G     V D   L +I   +LSNA+ F+  G+  +   A D   GD  +F+V + G  IP
Sbjct: 328 GL--PLVTDEVMLTRILRNLLSNALKFTEHGTVSLEVEAEDGPGGDHVVFTVTDTGIGIP 385

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+  + +F  F  V   H+  R G GLGL        L GG + ++S     T +  R+P
Sbjct: 386 EEEQQQIFEEFYQVRGPHQRGRSGTGLGLPYARRLTELLGGSLVLTSGPGQGTRVTVRLP 445

Query: 790 SKE 792
           + +
Sbjct: 446 AGQ 448


>gi|254474320|ref|ZP_05087709.1| two component sensor kinase [Pseudovibrio sp. JE062]
 gi|211956595|gb|EEA91806.1| two component sensor kinase [Pseudovibrio sp. JE062]
          Length = 767

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 3/240 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           ++T   RAE  L        +A+  K+ ++  +S+E+R+PL  +IGF+++++  + G L 
Sbjct: 513 DITQFKRAEEELVSARYKAEEANTHKSEYLTKISHEIRTPLNAVIGFSEVMQEERFGELG 572

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +  +Y   I  S + +L L+ND+LDLA ++AG M L +  +   D++NE    +  + 
Sbjct: 573 NVRYKEYARDIHRSCSHMLTLINDLLDLAKIEAGKMDLAFEAVSAADIINECVALLQPQA 632

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIF 721
           +E  + I+  +   +   VAD + L QI   +LSNA+ F+  G  VI+    D NG+   
Sbjct: 633 NEQRVIIRASTPLSVPKIVADPKTLRQITLNLLSNAIKFNRSGGQVIVSLVLDPNGEVHL 692

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780
            V++ G  + +   ++    F          G GLGL + ++ +  +    SI+S  DEG
Sbjct: 693 RVRDTGHGMSKADLEAALQPFRRLNASASTEGSGLGLPLTKALVEANRASFSINSEEDEG 752


>gi|329765398|ref|ZP_08256978.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138304|gb|EGG42560.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 606

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 5/238 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK E  +K D  K+ F+  +++EL++PL  I G++D+L +  LG L  +Q + +  I +S
Sbjct: 360 EKEELAKKTDIAKDEFLAMITHELKTPLVPIQGYSDILLSEHLGKLTDRQKERINIIKSS 419

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LL L++D+LD   ++ G +++   T  + + + EV +S   +  +NN  IK IS+ K
Sbjct: 420 SETLLALISDLLDAQKLELGQLRMKMETNNIKETITEVIESFTPQAQKNN--IKFISNLK 477

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735
                 D  R+ Q+ S ++ N+M        VI     +    +  SVK+NG  IP D  
Sbjct: 478 DVYVEYDEDRIKQVLSNLIKNSMIAVEPEKGVIEITMVNYPQTVQVSVKDNGIGIPADKQ 537

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +++F +F  V      ++ G GLGL+I +  I+ HGG +   S     T     +P K
Sbjct: 538 ENLFKKFYQVDTTLTREKSGSGLGLAICKGIIDTHGGEIFCKSIPRQETVFTFTLPKK 595


>gi|187777476|ref|ZP_02993949.1| hypothetical protein CLOSPO_01044 [Clostridium sporogenes ATCC
           15579]
 gi|187774404|gb|EDU38206.1| hypothetical protein CLOSPO_01044 [Clostridium sporogenes ATCC
           15579]
          Length = 469

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 5/231 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA+ + +  +  F+ +VS+E+RSP+T+I GF   +    + +   KQ  Y++     +  
Sbjct: 239 EAIEQVEINRRLFISNVSHEIRSPITSIKGFIGGILDGIVPA--EKQDYYLKLTYEETQR 296

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V + D K+ 
Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRTSVIKFETKIRDKKLKVNVSLEDDKV- 355

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             +AD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  K +
Sbjct: 356 YVIADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++RF  ++  R  +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|209548487|ref|YP_002280404.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534243|gb|ACI54178.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 513

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 5/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+V   +RAE A     +A   A++ K+ F+  VS+ELR+PL  I+GF+D+L     G  
Sbjct: 218 VSVEQQLRAE-AQNRVADA-ESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKF 275

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N +Q +YV  +  S   LL++VN +LD++ ++AG  +L      +   +   +  +A +
Sbjct: 276 ENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILEPFDIASSVKSCESMLALQ 335

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                + +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    
Sbjct: 336 AKTKGLTLTSRIQRGLGEIVADQRAIQQILINLVGNAIKFTEAGGVVSVDAAARDGILKL 395

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  I  D    +   FV   +   RR  G GLGLS+V+  + LHGGH +I+S   
Sbjct: 396 TVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGHFAIASQPG 455

Query: 780 GVTTINCRI 788
             T I   I
Sbjct: 456 EGTIITIEI 464


>gi|75909568|ref|YP_323864.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75703293|gb|ABA22969.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 575

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 155/338 (45%), Gaps = 42/338 (12%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           W+T      P   +  +A   +R  N    +DL A + T  +DE   L  +L  L + V 
Sbjct: 266 WRTSRAIAEPVITVTQVAEQVARKPN----FDLRAPVTT--EDEIGLLAKSLNRLIERVS 319

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E +                       + L +  E    A + K+ F+ +VS+ELR+PL  
Sbjct: 320 ERT-----------------------KELEQAKELAEAASKAKSIFLANVSHELRTPLNA 356

Query: 587 IIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +IG + LLK      SL+ + +  +E I+++   LL L+NDILDL+ ++AG M L     
Sbjct: 357 VIGLSQLLKDDAADLSLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIF 416

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+N V  ++   + +NN  +++  D  LG+  AD+ R+ Q+   +LSNA  F++ G
Sbjct: 417 DVVTLINNVVLTVKPTIEKNNNILEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFTTNG 476

Query: 706 STVILKAARDNGDFI---------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           S + L   R+  DF+         F+V + G  +       +F  F        ++  G 
Sbjct: 477 S-IKLTVRREKEDFLAEMPFGAISFTVSDTGIGMSPSQQLQLFQPFTQGDTSTTKKYGGT 535

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I   F  + GG + + S     +T    +P +E
Sbjct: 536 GLGLAISRHFCQMMGGEIIVKSQPGLGSTFTVYLPLQE 573


>gi|225628039|ref|ZP_03786075.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|254702323|ref|ZP_05164151.1| sensory box histidine kinase [Brucella suis bv. 5 str. 513]
 gi|254710637|ref|ZP_05172448.1| sensory box histidine kinase [Brucella pinnipedialis B2/94]
 gi|256032130|ref|ZP_05445744.1| sensory box histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|256160326|ref|ZP_05458020.1| sensory box histidine kinase [Brucella ceti M490/95/1]
 gi|256255531|ref|ZP_05461067.1| sensory box histidine kinase [Brucella ceti B1/94]
 gi|256370019|ref|YP_003107530.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260169265|ref|ZP_05756076.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261222740|ref|ZP_05937021.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            B1/94]
 gi|261318208|ref|ZP_05957405.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis B2/94]
 gi|261752887|ref|ZP_05996596.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 5 str. 513]
 gi|261758777|ref|ZP_06002486.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|265989241|ref|ZP_06101798.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M292/94/1]
 gi|265998702|ref|ZP_06111259.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M490/95/1]
 gi|225617202|gb|EEH14248.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|256000182|gb|ACU48581.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260921324|gb|EEX87977.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            B1/94]
 gi|261297431|gb|EEY00928.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis B2/94]
 gi|261738761|gb|EEY26757.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261742640|gb|EEY30566.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 5 str. 513]
 gi|262553326|gb|EEZ09160.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M490/95/1]
 gi|264661438|gb|EEZ31699.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M292/94/1]
          Length = 1035

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 2478

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 127/256 (49%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            RA  +L EK E L    + K+ F+ ++S+ELR+PL +++    LL  +K G+L++KQ +Y
Sbjct: 1755 RARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNSLLILAKLLSDNKDGNLSTKQVEY 1814

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I AS   LL+L+N+ILDL+ V+AG M++    IVL +L   +++S      +  +  
Sbjct: 1815 ANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFIERSFLPVAEQKGLSF 1874

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI------- 720
             V +  G       D QRL Q+   +LSNA  F+ +GS  + +K A     F        
Sbjct: 1875 TVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDEGSVQLKVKLAEVGTHFDHEVLRRS 1934

Query: 721  -----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F+V + G  I  D  + +F  F        R+  G GLGLSI      L GG + 
Sbjct: 1935 RYVLGFAVSDTGIGIARDKQRLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIQ 1994

Query: 774  ISSSDEGVTTINCRIP 789
            ++S     +T    +P
Sbjct: 1995 VTSEPGRGSTFTLYLP 2010


>gi|39934927|ref|NP_947203.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648777|emb|CAE27299.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas
           palustris CGA009]
          Length = 610

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 3/241 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610
           E+AL +      +AD  K+ F+  +S+ELR+PL  IIGF+D++    +  L   ++ +Y 
Sbjct: 339 EQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVLMLGPERRKEYA 398

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+ S   LL++VN ILD++ +++G  ++          L      +A K  ++ I + 
Sbjct: 399 QLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLALKARDSGIDLV 458

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             +   L   V D +   QI   ++SNA+ F+ +G TV + AA +    +  V + G  I
Sbjct: 459 TRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAAVEGTRLVLRVTDTGVGI 518

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            E+  K + + F       QRR  G GLGLSIV+S + +HGG + + S  +  TT+   +
Sbjct: 519 AEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQIDCGTTVTVSL 578

Query: 789 P 789
           P
Sbjct: 579 P 579


>gi|298492942|ref|YP_003723119.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
 gi|298234860|gb|ADI65996.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
          Length = 574

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 149/322 (46%), Gaps = 42/322 (13%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           W+T      P   +  +A   +R  N    +DL A I T  DDE   L  +L  L + V 
Sbjct: 265 WRTSRALAEPVITLTQVAEQVARKSN----FDLRAPITT--DDEIGLLAKSLNRLIERVS 318

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E +                       R L +  E    A + K+ F+ +VS+ELR+PL  
Sbjct: 319 ERT-----------------------RQLQQAKELAEAASKAKSQFLANVSHELRTPLNA 355

Query: 587 IIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +IG + LLK   +    S      +E I+++   LL L+NDILD++ ++AG M L   T 
Sbjct: 356 VIGLSQLLKDDAVDIGASPDFITDLETINSAGRHLLELINDILDVSKIEAGKMTLYPETF 415

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+N V  ++   + +N   + +  D  LG+  AD+ R+ Q+   +LSNA  F++ G
Sbjct: 416 DIITLINNVVLTVKPAIEKNGNTLVLECDEYLGTMYADQTRMRQVLLNLLSNAAKFTTNG 475

Query: 706 ---------STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
                     T+ILK A   G  IF+V +NG  +     + +F  F+       ++  G 
Sbjct: 476 KVTLTVKIDKTIILKEA-PFGSIIFTVTDNGIGMSPSQEQKLFQPFIQGDISTTKKYGGT 534

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLGL+I   F  + GG + ++S
Sbjct: 535 GLGLAISRHFCQMMGGEILVNS 556


>gi|192290456|ref|YP_001991061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192284205|gb|ACF00586.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 610

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 3/241 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610
           E+AL +      +AD  K+ F+  +S+ELR+PL  IIGF+D++    +  L   ++ +Y 
Sbjct: 339 EQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVLMLGPERRKEYA 398

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+ S   LL++VN ILD++ +++G  ++          L      +A K  ++ I + 
Sbjct: 399 QLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLALKARDSGIDLV 458

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             +   L   V D +   QI   ++SNA+ F+ +G TV + AA +    +  V + G  I
Sbjct: 459 TRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAAVEGTRLVLRVTDTGVGI 518

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            E+  K + + F       QRR  G GLGLSIV+S + +HGG + + S  +  TT+   +
Sbjct: 519 AEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQIDCGTTVTVSL 578

Query: 789 P 789
           P
Sbjct: 579 P 579


>gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 963

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A   A+  K+ F+ ++S+ELR+PL  ++GF+ LL+   L  L+ +Q   +  I+ S   L
Sbjct: 502 AAETANLAKSVFLANMSHELRTPLNAVLGFSSLLRKDPL--LSKEQRTNLNIINRSGEYL 559

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+ND+L++A ++AG ++L+ + + L  L+ +V   +  +  E  +++ +    +   +
Sbjct: 560 LALINDVLEMAKIEAGWVQLDSAPLDLGMLVRDVTDMMQVRAQEKGLQLLIDQSSEFPRY 619

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +  D  RL QI   ++ NA+ F+ +G   +   LK        +  V++ GS I  +  +
Sbjct: 620 IRGDEARLRQILINLVGNAVKFTQQGGVTVRFGLKPNTTPAHLLIEVEDTGSGIAAEDQE 679

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  FV       ++G GLGL+I   F+ L GG V+++S     +     +P
Sbjct: 680 KIFEPFVQVGEVAMQKGTGLGLTITRQFVQLMGGSVTLNSKPGSGSLFRVELP 732


>gi|224539091|ref|ZP_03679630.1| hypothetical protein BACCELL_03991 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519295|gb|EEF88400.1| hypothetical protein BACCELL_03991 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 642

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 132/241 (54%), Gaps = 10/241 (4%)

Query: 539 MLTFVN---VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           ++TF+      D +  +  +T KN+A  +AD++K++F+ ++S+E+R+PL  I+GF++LL 
Sbjct: 243 VITFIQRDITEDIIYQQNLITAKNKA-EEADKLKSTFLANMSHEIRTPLNAIVGFSELLT 301

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +       ++ +Y + I  +S ILL L+ DILDL+ ++ G + +N   + L  L +E+ 
Sbjct: 302 ETDDAE---EKFEYKQLIETNSEILLKLIGDILDLSKIEVGSIDINRQKLNLCQLCDELY 358

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +S   ++    + +K+I+         D+ R +QIF+   +NA+ ++ +G  V+      
Sbjct: 359 RSFQQRIKNPKVTLKLINPYTKCVANFDKYRFMQIFTNFATNAIKYTPQGEIVMGYECMP 418

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            G     VK++G  IPE+    +F+RF       Q  G GLGLSI ++  +  GG V   
Sbjct: 419 -GQVRIYVKDSGIGIPEEKKNRIFSRFEKLDTFAQ--GTGLGLSICKAIADATGGEVGFK 475

Query: 776 S 776
           S
Sbjct: 476 S 476


>gi|242278251|ref|YP_002990380.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121145|gb|ACS78841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 542

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 11/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T++ +A R L +  E    A   K+ F+ ++S+E+R+PL  ++G   LLK++     
Sbjct: 147 VDLTETKKAHRQLIQAKEQAESASRAKSEFLANMSHEIRTPLNGVLGMLQLLKSA---PE 203

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ +Y+E        L  L++DILDL+ V+AG + ++ +   L +L+  +        
Sbjct: 204 KEKQLEYIELAVTGVKRLTTLLSDILDLSRVEAGKLAVDPAPFDLLELMQNLTDLYRPSA 263

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDN 716
            +  +++ + +    +     D  RL Q+ + I+SNA+ F++ G     +  +       
Sbjct: 264 QQKGLKLNLSLHPTTITKLTGDSSRLQQVLTNIISNAIKFTNDGIIKVETYPLPHTTAGT 323

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +FSV + G  IP+   + +F+ F+  S  ++   +G GLGLSI +  + L GG++SI
Sbjct: 324 TKILFSVSDTGPGIPDSKMEELFSPFIQLSEGYQRTHQGAGLGLSICKQLVELMGGNISI 383

Query: 775 SSSDEGVTTINCRIP 789
            S     TT+   IP
Sbjct: 384 ESELGIGTTVYLCIP 398


>gi|299133592|ref|ZP_07026786.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
 gi|298591428|gb|EFI51629.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
          Length = 525

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 11/234 (4%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   GS     + 
Sbjct: 238 EQAKAISDEARHRAEAANVSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGS--HAVAV 295

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y +Y   I  S   LLNL+N+ILDL+ ++AG  +LN     L  ++ +    +  +    
Sbjct: 296 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEPFSLVHVVADCHHLLKLRASSR 355

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724
            I I  + + ++     D +   QI   +LSNA+ F+ +G  + LK+    +G    SVK
Sbjct: 356 GITIHEVFEDEMPKLWGDERATRQIVLNLLSNAIKFTPQGGEIWLKSGWTASGGQYLSVK 415

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + GS IPED    V   F   SN+ +   +G GLGL I ++ I++HGG  ++ S
Sbjct: 416 DTGSGIPEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIDMHGGTFTLKS 469


>gi|83955167|ref|ZP_00963823.1| probable sensor/response regulator hybrid protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83840496|gb|EAP79669.1| probable sensor/response regulator hybrid protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 1064

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K DEIKN FV  VS+ELR+PLT+I G   L++ S   ++ +   + +E    ++  L  
Sbjct: 695 KKIDEIKNEFVSTVSHELRTPLTSIKGALGLIEMSARDTMPASALRLIEIARNNADRLTT 754

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           +VNDILDL  + +G +  + S + LN++++   Q +      +N ++ + + D  + +  
Sbjct: 755 IVNDILDLEKISSGKIDFDLSPMSLNEVISSAVQEMMPFAVTHNTKLVMDLPDTDI-NVA 813

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  R++Q+ + ++SNA  +SS+G+ V +KA       I  V+N G  +PE+    +F  
Sbjct: 814 ADWSRMMQVLANLMSNACKYSSEGTDVTIKAETIGDMAIVYVQNFGPGVPENFKNRIFQA 873

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           F S A     R   G GLGL+I    +   GG++   S   G T
Sbjct: 874 F-SQADGSDTRAKGGTGLGLNITRQIVWRQGGNIGFESKPSGTT 916


>gi|255531848|ref|YP_003092220.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255344832|gb|ACU04158.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 1179

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 11/244 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T   R E  L    E    A++ K+ F+ ++S+E+R+PL  IIGFTDLL  ++L 
Sbjct: 522 TIQDITKIKRMEANLISAKEDAESANKAKSEFLANMSHEIRTPLNGIIGFTDLLIKTQL- 580

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             N  Q QY+  ++ S   LLN +NDILD + ++AG +++N+S   L ++  E    I  
Sbjct: 581 --NETQQQYLSIVTQSGNALLNTINDILDFSKIEAGKLEMNWSKFNLYEMAEESADVIKY 638

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           ++    + + +     L  ++ AD  RL QI   +L NA+ F+  G   +   A  N + 
Sbjct: 639 QVQSKGLEMLLNISADLPKYIWADELRLKQILINLLGNAVKFTESGEIELKVEALTNPEL 698

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
               + FSV++ G  I  D    +F+ F        +R  G GLGL+I    + L    +
Sbjct: 699 PEIKYRFSVRDTGIGINPDKKLKIFDAFSQEDASTTKRYGGTGLGLTISNKLLGLMNSQL 758

Query: 773 SISS 776
            + S
Sbjct: 759 QVES 762


>gi|262170598|ref|ZP_06038276.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
 gi|261891674|gb|EEY37660.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
          Length = 916

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 274 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 329

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 330 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 389

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 390 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 491


>gi|258622337|ref|ZP_05717362.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
 gi|258585353|gb|EEW10077.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
          Length = 927

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
 gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
          Length = 718

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 130/251 (51%), Gaps = 9/251 (3%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P+   +   +N+TD+V  E  L +       A+  K++F+ ++S+E+R+P+  I+G  DL
Sbjct: 181 PDGDVVSLALNITDTVLYENQLKKARYQAETANRAKSAFLANMSHEIRTPMNGIVGMADL 240

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  + LG    +Q  +V+ I  S   LL ++ND+LD + ++A  ++L  +T      ++E
Sbjct: 241 LSETGLG---EEQRLFVDTIRNSGEALLTIINDVLDYSKIEAERLELRPTTFDFEQCIHE 297

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LK 711
           V + +     + +I + V  D  L +  V D  R+ QI + I+ NA+ F+  G  +I + 
Sbjct: 298 VMRLLQPPARDKDIALLVDYDLFLPTQVVGDPGRIRQILTNIIGNAVKFTPSGHVLISVT 357

Query: 712 AARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
              ++G  D   ++++ G  IP      +F  F  V +    +  G GLGLSI +  + L
Sbjct: 358 GTHEDGVCDLRVTIQDTGIGIPAPKIDHIFGEFNQVDDEQSREFEGTGLGLSITKRLVEL 417

Query: 768 HGGHVSISSSD 778
            GG + ++S +
Sbjct: 418 MGGQIWVTSEN 428


>gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01]
 gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01]
          Length = 1000

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 11/232 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E A   K++A+ KA + K+SF+ ++S+E+R+PL  +IG +++L  +   SL + Q  YV 
Sbjct: 326 EDAEQAKDDAI-KASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---SLTATQKDYVG 381

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS +LL+L+NDILD + +++G++ ++  +  + + + ++   ++ K  E  I +KV
Sbjct: 382 TIETSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIDLKV 441

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNN 726
            IS       + D  RL Q+    +SNA+ F+ KG    S      +  N    FSV+++
Sbjct: 442 SISRNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGSVHLSVTTHGVSGANAVMEFSVQDS 501

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I E   K++F  F    +   R+  G GLGL+I    + L GG + + S
Sbjct: 502 GIGIDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGKIQLES 553


>gi|71905865|ref|YP_283452.1| PAS [Dechloromonas aromatica RCB]
 gi|71845486|gb|AAZ44982.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1214

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 134/248 (54%), Gaps = 14/248 (5%)

Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           ER L+   E  R+  E     +  F+ ++S+E+R+PL  +IG   LL  +KLG    ++ 
Sbjct: 557 ERTLSAMRELARQEAEGLARARAEFLANMSHEIRTPLNAVIGLAYLLLQNKLGE---REM 613

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV+ I  +  +LL +VND+LD + +DAG M+L  S+  L+DLL+ +   + T+  E N+
Sbjct: 614 EYVKRIEGAGKLLLAIVNDVLDFSKIDAGKMQLEESSFQLDDLLDNLSSLVRTRAQEKNL 673

Query: 668 RIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FS 722
            ++ V++     +   D  RL QI   ++SNA+ F+++GS TV +  A +  + I   F 
Sbjct: 674 VLEYVVAPDATQNLRGDALRLSQILINLVSNAIKFTAEGSITVFIDVASNKDNRIELEFR 733

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           +++ G  +  +   ++F  F        R+  G GLGL+I +  I + GG +   S  + 
Sbjct: 734 IQDTGIGMSAEQTDNLFRAFSQADSSVTRKFGGTGLGLAISKRLIEMMGGTIWAHSVPQV 793

Query: 781 VTTINCRI 788
            +T + R+
Sbjct: 794 GSTFSFRV 801


>gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
 gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
          Length = 1346

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 14/225 (6%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+E+R+P+  +IGF DLL  + L     +Q Q+V+ I +S T LL++++DIL
Sbjct: 819  KSKFLANMSHEIRTPMNGVIGFADLLSDTDL---TPEQQQFVDAIQSSGTTLLSIIDDIL 875

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            + + ++AG  +L  + I +   + E    +A K+ E  I +  + D  + S +  DR RL
Sbjct: 876  NFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTRL 935

Query: 688  LQIFSKILSNAMDFSSKGST-----VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFN 740
             QI   +LSNA+ F+ +G       V    A  +G  +  FSV++ G  IP++    +F 
Sbjct: 936  HQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGMYELHFSVRDTGIGIPKEKRDRLFE 995

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             F  V  +   +  G GLGLSI +      GG + + S+  EG T
Sbjct: 996  SFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGST 1040


>gi|294495726|ref|YP_003542219.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666725|gb|ADE36574.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 637

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 145/281 (51%), Gaps = 9/281 (3%)

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNS 571
           +L G L+  +D+ +E     +P     +    + D+++     L + NE L+  D +K+ 
Sbjct: 354 ALHGKLDSRADTEVEVDFKEIP-----VGLNEILDALKKNSDELRKANEELKSLDRMKDE 408

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ +VS+EL++PLT I G+T+LL   K+G LN +Q +    +  ++  L  LV+ +L L+
Sbjct: 409 FLSNVSHELKTPLTLIKGYTELLCEGKMGQLNKEQIEVQNKVVRNAERLKRLVDSLLYLS 468

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            + A  ++  + T+ + +++  + + +        I +++  +  L     D+ +L  + 
Sbjct: 469 KIQASNVEYVFETVHVKEIIEIILEDMRMIADLKGIELEMNLEEDLPKINGDKDKLTDMI 528

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQ 750
           + I+ NA+ F+  G  V + + +  GD    VK+ G  IPEDM  ++F RF   +A R +
Sbjct: 529 TNIVDNAIKFTPSGGKVTVTSFKKEGDIHIVVKDTGIGIPEDMIDNLFQRFYQLDASRTR 588

Query: 751 RR-GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +  G GLGL I  +    H G +  +S  EG  T ++  IP
Sbjct: 589 KYGGTGLGLYISMTIAQAHHGDIWATSEGEGKGTEMHIEIP 629


>gi|254502891|ref|ZP_05115042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222438962|gb|EEE45641.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 807

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 12/263 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT+L   +VT+    E  L     +   ++E K+ F+  VS+E+R+PL  ++G   LL+ 
Sbjct: 263 QTVLR--DVTERRLIEEELLAARHSAETSNEAKSRFLATVSHEIRTPLNGVLGMAALLRD 320

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++L     +QS Y++ +  S   LL L++++LD + V+AG + ++ + I +  L   V +
Sbjct: 321 TRL---TKEQSAYIKALETSGETLLLLIDEVLDFSKVEAGKLDIHAAPIKVGALAESVVE 377

Query: 657 SIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +A K H  ++ I  + D +L   V  D  R+ QI   ++ N + F+  G   +    R 
Sbjct: 378 LLAPKAHAKHLEIGTLIDSRLPEHVTLDATRVRQILFNLIGNGVKFTDDGGVAVELHGRP 437

Query: 716 N---GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           N   G F+   V++ G     D  + +F  F    H   R+  G GLGL+I +   +L G
Sbjct: 438 NLEGGSFLDLVVRDTGIGFAADEAERLFQEFEQVDHGPARKFGGTGLGLAIAQRLAHLMG 497

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G +S   + EG       +P  E
Sbjct: 498 GGISARPASEGGALFEVSLPIPE 520


>gi|219848609|ref|YP_002463042.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219542868|gb|ACL24606.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 910

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 7/239 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R E+ L    +A   A   K++F+  +S+ELR+PLT IIG++ LL+      +  
Sbjct: 372 VQERRRIEQELIRARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLLEQLVDKGIYE 431

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             +  V  I A+   LL L+NDILD++ ++AG M ++     + DL+ +   ++  +M +
Sbjct: 432 TVAHDVRRIRAAGNHLLTLINDILDISKIEAGRMTISVEYADVADLVRDAVNTVLPQMEK 491

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD--FI 720
           N+ R+++     +G   +D  ++ Q    +LSNA  F+  G TV L   R  D G   F 
Sbjct: 492 NHNRLQLHCPPDIGMLNSDATKVRQALINLLSNAAKFTENG-TVTLTVTRYEDEGRLWFR 550

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F+V + G  IP D    +F  F  + ++   +  G GLGL++ +    L GG +++ S+
Sbjct: 551 FTVADTGIGIPPDKLDKLFKAFSQIDDSPTRKYGGTGLGLALSQRLCELVGGRITVQST 609


>gi|34556655|ref|NP_906470.1| hybrid sensory histidine kinase [Wolinella succinogenes DSM 1740]
 gi|34482369|emb|CAE09370.1| HYBRID SENSORY HISTIDINE KINASE [Wolinella succinogenes]
          Length = 538

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 131/263 (49%), Gaps = 16/263 (6%)

Query: 529 SIIPLPNAQTMLT-FVN----VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++PL +    +T F+     +T  +RA+ AL    +   +AD +K  F+ ++S+E+R+P
Sbjct: 228 TVVPLMDENNQITQFLGLCYEITSLIRAQNALRVALKRAEEADRVKGVFLANMSHEMRTP 287

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIGF  LL      +LN +Q +YVE I  S   LL ++NDILDL+ +++G  +L   
Sbjct: 288 LNGIIGFGRLLLEE---NLNQEQREYVEIIDKSGEHLLGIINDILDLSKIESGKFELESL 344

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
            + L++ L  V      K  E  +++  +     G  +  D  RL Q+ + +L NA+ F+
Sbjct: 345 PMKLSEELRAVADFCEVKAREKGVKLLCLFKEIEGLIIQGDVMRLKQVTANLLGNAIKFT 404

Query: 703 SKGSTV-----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
            +G  V     +L+   +     FSV + G  I  +  + +F  F        R   G G
Sbjct: 405 PEGGEVRLGVEVLEEREEAIALDFSVSDTGIGIAPEYLEKIFRPFEQAESSTARNYGGTG 464

Query: 756 LGLSIVESFINLHGGHVSISSSD 778
           LGLSI +  + L GG +   S +
Sbjct: 465 LGLSISQELVRLMGGEMRCQSEE 487


>gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 916

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 274 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 329

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 330 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 389

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 390 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 491


>gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 966

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E   A   A + K+ F+  +S+E+R+P++ ++G  +LL  + L     +Q  Y + I 
Sbjct: 286 LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHL---TPQQKDYTQTIY 342

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++N+ILDL+ ++AG   L      L D L  V   +A K  +  + + ++ +
Sbjct: 343 RSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLAVKAEDKQLELIILLE 402

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
             L  ++  D  RL Q+   +++NA+ F+  G  +I    R    D+ +  F++++ G  
Sbjct: 403 PNLPRYLKGDGMRLQQVLINLVNNAIKFTKSGHIIIRVTPRVISQDHINIYFAIEDTGMG 462

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           I +++   +F  F   S+A   Q  G GLGLSI +  +NL GG + + S +E
Sbjct: 463 ISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVKSQEE 514


>gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
 gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
          Length = 1346

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 14/225 (6%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+E+R+P+  +IGF DLL  + L     +Q Q+V+ I +S T LL++++DIL
Sbjct: 819  KSKFLANMSHEIRTPMNGVIGFADLLSDTDL---TPEQQQFVDAIQSSGTTLLSIIDDIL 875

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            + + ++AG  +L  + I +   + E    +A K+ E  I +  + D  + S +  DR RL
Sbjct: 876  NFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTRL 935

Query: 688  LQIFSKILSNAMDFSSKGST-----VILKAARDNGDF--IFSVKNNGSSIPEDMCKSVFN 740
             QI   +LSNA+ F+ +G       V    A  +G +   FSV++ G  IP++    +F 
Sbjct: 936  HQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGTYELHFSVRDTGIGIPKEKRDRLFE 995

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             F  V  +   +  G GLGLSI +      GG + + S+  EG T
Sbjct: 996  SFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGST 1040


>gi|303241735|ref|ZP_07328232.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302590736|gb|EFL60487.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 503

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 122/218 (55%), Gaps = 4/218 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL   +E++  F+ +VS+ELR+P+T+I GF + +    +     ++ +Y+  +S  +  L
Sbjct: 265 ALENLEEMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPP--EREREYLSIVSDETKRL 322

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L ND+LDLA +++G MKL + T  +N+L+      +  ++   NI+I+     +    
Sbjct: 323 SRLTNDLLDLARMESGEMKLTFVTFDINELIRRCIIKLENQIVTKNIQIEANFHEEAAHV 382

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD+  + ++   +L NA+ F   G  +I++     G  + SVK+NG+ I  +    +++
Sbjct: 383 YADKDSIERVVLNLLHNAVKFVQDGGQIIIETEMSKGKVMVSVKDNGAGIDSEEIGLIWD 442

Query: 741 RFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
           RF  S+  RG+ + G GLGL+IV++ IN HG  + + S
Sbjct: 443 RFYKSDKSRGKDKSGTGLGLAIVKNIINEHGQEIRVES 480


>gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 757

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 157/338 (46%), Gaps = 17/338 (5%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI------AATCSRYYNESDGWDLF 500
           ++VFG DG I+  +PA   L       L+ G ++R+I        T + + +   G D  
Sbjct: 267 ISVFGLDGAIEYLSPAVEKLLGFTPAELT-GRNVRDIVLPEDYPVTRAAFASYVRGGDWS 325

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           A     +    K  QG +  L  S           A+      ++T+    E AL +   
Sbjct: 326 AVPRVQYRARHK--QGHIVWLEASPRAMLGPDGKIAKLQDVVRDITERKAVEAALEDAMV 383

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               A E K+ F+  +S+ELR+PLT+IIGF+ LL+       + +  +Y + I  +S  L
Sbjct: 384 DANAAAEAKSQFLATMSHELRTPLTSIIGFSALLREV---VESEEPRRYSQRIWTASQGL 440

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+NDILD + ++AG ++L+ +    N+L+ EV   +  + H   + + V +D  +   
Sbjct: 441 LALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAHAKGLFLTVDTDDDMPLM 500

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
           + D  R+ QI   +  NA+ F+  G   I    R  GD +  +V + G  I  +  K +F
Sbjct: 501 LLDEVRMRQILINLAGNAVKFTGDGGVTIALHWR--GDRLQVTVTDTGPGISPEGHKRLF 558

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            RF    H     G GLGL I +  + L GG + + SS
Sbjct: 559 KRFSQVDH--TTNGTGLGLMICKQLVELMGGRIGVESS 594


>gi|237726071|ref|ZP_04556552.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229435879|gb|EEO45956.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 807

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 16/240 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  ++   + 
Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  +  ++ +LL L++DILDL+ +++G  +   S   +N L  E+ +S+  K+ 
Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673

Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                ++++ +  L      AD+ RL Q+ S  ++NA+ F+  GS  +    + +G   F
Sbjct: 674 AG---VELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            V++ G  IP++  K+VF+RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 731 YVRDTGMGIPKNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785


>gi|242280564|ref|YP_002992693.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123458|gb|ACS81154.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 1006

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 10/223 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+P+ +I+G  D+L  ++L    S+Q  YV     S   LLNL+
Sbjct: 496 ANRTKSEFLAQMSHEIRTPMNSILGMADMLTDTRL---TSEQRNYVSIFRDSGKALLNLI 552

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           +DILDL+ +++G + L ++   ++DL++EV   ++    + N+      D    SF   D
Sbjct: 553 DDILDLSKIESGKLTLEHTKFNIDDLVDEVAGIMSVSAWKKNLIFACHVDPYCPSFFEGD 612

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFS--VKNNGSSIPEDMCKSVF 739
             R+ QI   +LSNA+ F+  GS V  I  +    G  I +  V+++G  I E+  K +F
Sbjct: 613 PTRIKQILVNLLSNAIKFTDSGSVVLEISSSPGSQGKTILNMIVRDSGIGISEEKFKDIF 672

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
             FV       R+  G GLGLSI  + + L  GH+ + +   G
Sbjct: 673 ENFVQADSSTTRKYGGTGLGLSITRNLVELMNGHIDVRNVSSG 715


>gi|306843027|ref|ZP_07475653.1| PAS domain S-box-containing protein [Brucella sp. BO2]
 gi|306286784|gb|EFM58327.1| PAS domain S-box-containing protein [Brucella sp. BO2]
          Length = 1038

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 670  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 707

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 708  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 767

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 768  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 827

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 828  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 887

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 888  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 947

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 948  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1007

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1008 EANRAQFAIDSNPGQGTVVEIVFPP 1032


>gi|256839617|ref|ZP_05545126.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738547|gb|EEU51872.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 771

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E +L    +   ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +     +++++++
Sbjct: 526 ENSLIAARQKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 584

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    M E   ++I+
Sbjct: 585 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 644

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729
           V  +  +    +D  RL Q+ +  ++NA+ F++KG   I  + + D    + SVK+ G  
Sbjct: 645 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 702

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S
Sbjct: 703 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 747


>gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 982

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  RAE  L    E    A+  K+ F+ ++S+E+R+P+  +IG T LL  +    L 
Sbjct: 445 DVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLET---GLA 501

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y E +  S+  LL +++DILD + ++AG +++      L  LL+++ +S+A K +
Sbjct: 502 DEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKAN 561

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720
           E  +    +   ++  F + D  RL Q+   +  NA+ F+ +G  +V + +    GD + 
Sbjct: 562 EKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQGEISVEVGSLTKTGDSVK 621

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F+V++ G  IP +  + +F +F        R+  G GLGL+I +  + + GG + ++S
Sbjct: 622 LRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTS 681


>gi|298241540|ref|ZP_06965347.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554594|gb|EFH88458.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 680

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 179/409 (43%), Gaps = 60/409 (14%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGV-AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            + D++ + + L  +    +D L  GV  V GP  R+ ++N A  +LW  E  R  P   
Sbjct: 293 ARADMDARLHVLQSI----LDRLPNGVFLVQGPQLRLLMANDAAAALWGAEWPRGQP--- 345

Query: 480 IRNIAATCSRYYNESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSII----P- 532
                      + +  G  LF A       DD    L G   + S   + Y  +    P 
Sbjct: 346 --------QEEFLQQQGIHLFNANGQPLPMDD----LTGARAMASGEPVLYRQLGIRRPD 393

Query: 533 ---LPNAQTMLTFVNVTDSVRAERALT--------------EKNEALRKADEIKNSFVQH 575
              LP     + F N++   R  + +T              +   AL++A+ +K+ F+  
Sbjct: 394 GTRLPVVVDAIPFTNLSLLPRLPQEMTPALPSAERVVLVVYQDVSALKEAETLKDQFISL 453

Query: 576 VSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            ++ELR+PLT + G+ D L       K   L+  Q + V+ +  +S  L +L  D+LD+ 
Sbjct: 454 ATHELRTPLTIVAGYADRLLIRAARGKEHGLDEWQREKVQEMKQASWQLASLTEDLLDVT 513

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            + AG   L   +  L DL  +V Q +     ++ + ++  +  +L + V D  R+ Q+ 
Sbjct: 514 RMQAGQFALERRSTDLVDLTRKVIQRLQATTDKHQLDVQA-APPQLWATV-DTFRIEQVL 571

Query: 692 SKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAH 747
           S +LSNA+ +S  G    V+L+   +  +  F +++ G  IP      +F RFV   NA 
Sbjct: 572 SNLLSNAIKYSPGGGPIEVMLEEHAETHEARFRIRDQGMGIPRAQQAHLFGRFVRAENAR 631

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-----TINCRIPSK 791
               RG GLGL +    I  HGGH+    S+EGV      ++ C  P+ 
Sbjct: 632 AAGIRGTGLGLYLCRELIERHGGHIDF-ESEEGVGSTFFFSLPCHEPAP 679


>gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
 gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
          Length = 927

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
 gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
          Length = 927

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
 gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
          Length = 927

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|45358683|ref|NP_988240.1| ATPase-like ATP-binding protein [Methanococcus maripaludis S2]
 gi|45047549|emb|CAF30676.1| ATP-binding protein, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal:Bacterial sensor
           protein C-term [Methanococcus maripaludis S2]
          Length = 614

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 123/232 (53%), Gaps = 4/232 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L++ D +K+  +  VS+ELR+PLT I+G+ +LLK    G L+ KQ +++  IS +S  
Sbjct: 382 DELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVISENSDR 441

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  + +++ DL TVD  I+ +    I L   +N++ +S        NI +  + D     
Sbjct: 442 LKRITDNMSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVL--LEDVDNLD 499

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D+ ++ Q+ S ++ NA+ FS K + V +    D G+    + + G  IP++    +F
Sbjct: 500 IKGDKSKIHQVLSNLIENAIKFSKKQTKVTVMGFEDKGNIHLEITDQGPGIPKEHLGKIF 559

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++F  + ++ + +  G GLGL++ +  +  HGG + + S     TT++   P
Sbjct: 560 DKFYQIDSSSKREVGGSGLGLAVCKKIVESHGGSIWVESKIGKGTTVHVMFP 611


>gi|225863934|ref|YP_002749312.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225790705|gb|ACO30922.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 459

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 227 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 285

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 286 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 344

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++G  I
Sbjct: 345 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 401

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 402 AKEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 458


>gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
 gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
          Length = 837

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 12/256 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           FV+VTD   AE+A  E  +A  +A  +K+ FV ++S+ELR+PL +IIGF      ++LG 
Sbjct: 577 FVDVTDFRAAEQATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGF------AELGH 630

Query: 602 LNSKQS-QYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           L S++S Q+ E    I ++   +L LVND+LD+A +++ +  ++   I L  L+  + + 
Sbjct: 631 LRSRKSPQFSEMFNDIHSAGQRMLALVNDLLDVAKLESAVGVIHLERIDLRGLIRPIARE 690

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDN 716
           +    H+  I +++  +       AD  R  Q+   +L+NA+ FS   G   ++    D+
Sbjct: 691 LEPLQHQKQIDLRLDLENFPMIAKADPVRFQQVVRNMLANAIKFSPNHGRVDVIGRFDDH 750

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           G+      + G  IP      +F  FV S+  +    G GLGL+I    I+   G +S  
Sbjct: 751 GNICIDFSDQGPGIPPQELDQIFQPFVQSSKTKDGSGGTGLGLAICRKIIDAMDGTISAK 810

Query: 776 SSDEGVTTINCRIPSK 791
           +  +G       +PS+
Sbjct: 811 NKPDGGAIFRITLPSR 826


>gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 982

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  RAE  L    E    A+  K+ F+ ++S+E+R+P+  +IG T LL  +    L 
Sbjct: 445 DVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLET---GLA 501

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y E +  S+  LL +++DILD + ++AG +++      L  LL+++ +S+A K +
Sbjct: 502 DEQRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKAN 561

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720
           E  +    +   ++  F + D  RL Q+   +  NA+ F+ +G  +V + +    GD + 
Sbjct: 562 EKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQGEISVEVGSLTKTGDSVK 621

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F+V++ G  IP +  + +F +F        R+  G GLGL+I +  + + GG + ++S
Sbjct: 622 LRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTS 681


>gi|53713918|ref|YP_099910.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216783|dbj|BAD49376.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1022

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 132/237 (55%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + V D    ER + E  +A     ++D++K++F+ ++S+E+R+PL  I+GF+DLL  S+ 
Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 680

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y    L +  + +  S+ 
Sbjct: 681 ---QGDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++    +++  ++   +     D+ R+ Q+ +  ++NA+ ++ +G+  +     D G  
Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDAGIR 797

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ V++ G  IPE+  + VF+RF       Q  G GLGLSI ++     GG V   S
Sbjct: 798 LY-VRDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851


>gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
 gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
          Length = 927

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|186682661|ref|YP_001865857.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465113|gb|ACC80914.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1242

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 152/301 (50%), Gaps = 21/301 (6%)

Query: 503  IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNE 560
            ++++   E   ++G LE+ +D   +Y I P  +A+ +L  V  N+  S   + AL ++ E
Sbjct: 799  LLSARAGEESRVEG-LEMGAD---DYLIKPF-SARELLARVRTNLELSRLRKDALAQQAE 853

Query: 561  ALRK---------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
             +R+         A+ +K+ F+Q +S+E+R+PL  ++G+  +L+  KL S  S  ++ +E
Sbjct: 854  RIREQAARVEAEAANRMKDEFLQVLSHEIRTPLNGMLGWVKMLRQGKLDS--SATTRALE 911

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I  ++     LV+D+LD++ +  G ++L    + L  ++ E  +++  +    +I I  
Sbjct: 912  TIERNANAQAKLVDDLLDVSCIIRGQLRLEKRPVSLISVITEAIETLKPQAEAKDITINC 971

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            + D  + S   D  RL Q+   +LSNA+ F+  G  V +       D +  VK+ G+ I 
Sbjct: 972  MLDRYVSSVSGDASRLQQVAWNLLSNAIKFTPSGGQVEVSLQAVGTDALLQVKDTGNGIK 1031

Query: 732  EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
             D    +F RF        R   G+GLGL+IV   + +HGG V   S   G+  T   R+
Sbjct: 1032 ADFLPYIFERFRQADASTTRTYGGLGLGLAIVRHLVEMHGGTVEADSPGLGLGATFGVRL 1091

Query: 789  P 789
            P
Sbjct: 1092 P 1092



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 119/239 (49%), Gaps = 8/239 (3%)

Query: 544 NVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            V+ S+R  +A  E   K +AL + D  K +F  +VS+E R+PLT I+G  + +  ++  
Sbjct: 405 QVSVSLRNAQAYEEERKKAQALAELDRTKTAFFNNVSHEFRTPLTLILGPLEDVLNNQNA 464

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L S++ + ++ +  +S  LL LVN +LD + ++A  ++  Y  I L     E+     +
Sbjct: 465 RLTSEEREQLQLVHRNSLRLLKLVNTLLDFSRIEANRIQAVYEPIDLAVFTTELASVFRS 524

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +    +R+ V       +   DR+   +I   +LSNA  F+  G   +  + R   +++
Sbjct: 525 TIERAGLRLIVDCPPLPEAVYVDREMWEKIVLNLLSNAFKFTFIGQISV--SLRWYTEYV 582

Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              V++ G  IP +    +F RF  V         G G+GLS+V+  I LHGG + +SS
Sbjct: 583 ELEVQDTGIGIPAEELPHLFERFYRVQGLQGRTYEGSGIGLSLVQDLIRLHGGSIRVSS 641


>gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395]
 gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
          Length = 927

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
 gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
          Length = 1092

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 133/243 (54%), Gaps = 9/243 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   +A R L         + ++K  F+ ++S+E+R+P+  +IG  DLL  ++L   N
Sbjct: 562 DITKLKQANRELLHAKNMAENSLKVKEQFLANMSHEIRTPMNGVIGMVDLLSQTQL---N 618

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  +V  I  SS  LL ++NDILDL+ ++AG MK+      +  + ++V    + + +
Sbjct: 619 PEQMNFVHTIKRSSETLLTILNDILDLSKIEAGKMKIQPHITEVKSVFDKVLNLFSQQAN 678

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF- 721
           + +I +    D ++  ++  D  R++QI S + SNA+ F+ K   V+L  +++  D ++ 
Sbjct: 679 QKSIDLSYKIDSEIPKYLKIDETRIIQIISNLTSNALKFTEKEGKVLLHISKEIKDNLYR 738

Query: 722 -SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-S 777
            +V++ G  I E+  + +F  F  V N+      G GLGL+I +   +L GG + +SS  
Sbjct: 739 IAVEDTGIGISENDQQQLFKLFTQVDNSSTKAFSGTGLGLAISKQLSSLMGGQIGVSSEP 798

Query: 778 DEG 780
           DEG
Sbjct: 799 DEG 801


>gi|254460709|ref|ZP_05074125.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083]
 gi|206677298|gb|EDZ41785.1| conserved hypothetical protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 522

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 167/380 (43%), Gaps = 31/380 (8%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           L+ + +++ELA        L N +++ K + ++  F VW     G + W+N  Y+     
Sbjct: 136 LNHNDVHNELA-------PLPN-LALVKSVSENAPFPVWQSKADGSLGWSNAFYQS---- 183

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSF 286
              + ++      +LF  EI + M ++   ++     +   ++ NN++  + + R     
Sbjct: 184 ---LNRRVAHNQDQLF--EITETMDANDGAQR-----IKLRDNTNNRTHWFDVTRQCFED 233

Query: 287 GEAGIAIDVS---KEITVNDQLTHTY-EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G    AIDV    K  T       T  +   +L   +AIFD+NR L   N S  +L ++ 
Sbjct: 234 GYVNFAIDVHAVVKAETAQRNFVQTLAKTFAHLATGLAIFDRNRQLVLFNPSLFDLTDLR 293

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY--KSSETHKDTWHLPNGQTL 400
             FL T P+     + LR    +PE  ++  W+E I  V    S +   +TWHLPNG T 
Sbjct: 294 PEFLTTRPNLFSFFDQLRDKQIMPEPKSYANWRERIADVITAASDDNFSETWHLPNGLTY 353

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            V    +P G   ++FE+++ ++ L  ++     V    +D L + +A+F   G ++  N
Sbjct: 354 RVTGRPHPDGAIAFLFEDISAEISLTRRFRDEADVTHSALDALDQAIAIFNRAGFVQYHN 413

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A RSL   + ++      +R++   C R    S  W      +   + ER++    L+ 
Sbjct: 414 SAMRSLIGQQSDKDLEDMCVRDVTRLCQRTCKPSPVWGEIRNFVIE-NAERETWSAPLQS 472

Query: 521 LSDSVLEYSIIPLPNAQTML 540
                L   + PL +  +++
Sbjct: 473 KDGQTLALKVSPLASGASLI 492


>gi|60682125|ref|YP_212269.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493559|emb|CAH08347.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1022

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 132/237 (55%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + V D    ER + E  +A     ++D++K++F+ ++S+E+R+PL  I+GF+DLL  S+ 
Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 680

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y    L +  + +  S+ 
Sbjct: 681 ---QGDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++    +++  ++   +     D+ R+ Q+ +  ++NA+ ++ +G+  +     D G  
Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDAGIR 797

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ V++ G  IPE+  + VF+RF       Q  G GLGLSI ++     GG V   S
Sbjct: 798 LY-VRDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851


>gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
           4028]
 gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
           4028]
          Length = 1356

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 17/257 (6%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RA+  L  K + L  A   K+ F+ ++S+ELR+PL +I+  + LL  +K G+L+ KQ++
Sbjct: 660 LRAQEQLKLKAQELESASRYKSEFLANMSHELRTPLNSILILSQLLSHNKEGNLSPKQTE 719

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               I++S   LL L+N+ILDL+ V+AG ++L+   + L  +++++++       E  + 
Sbjct: 720 AASAINSSGADLLRLINEILDLSKVEAGKVELHLEEMPLTSMISDLQRVFKGVAVEKGVA 779

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------- 718
             V  D  L  + + D  RL Q+   +LSNA  F+  GS V L  +R   +         
Sbjct: 780 FLVEQDPALPETMLTDTHRLQQVLRNLLSNAFKFTDHGS-VTLSISRPGPEVDLPEGIPS 838

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  +V + G  IPED   ++F  F        R+  G GLGLSI      L GG +
Sbjct: 839 AEEAICIAVTDMGIGIPEDKQGTIFEAFRQADGSTSRKYGGTGLGLSISRELTKLLGGEI 898

Query: 773 SISSSDEGVTTINCRIP 789
            + S +   +T +  +P
Sbjct: 899 RLRSQEGKGSTFSLILP 915


>gi|163793573|ref|ZP_02187548.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181375|gb|EDP65890.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 950

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 181/394 (45%), Gaps = 25/394 (6%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +  +++ ++  E      V+   + ++ +++G A+FGPD R+ + N  F  +     +
Sbjct: 559 VIVLRDISARIGAEAAARQAVERLRDAVERITDGFALFGPDRRLVICNARFVDMLGEAGS 618

Query: 473 RLSPGTH---IRNIAATCSRYYNESDG----W--DLFAAII-TSFDDERKSLQGTLELLS 522
              PG     I    A  SR    + G    W  +  AA+  TS    R+ L G      
Sbjct: 619 TARPGGRYDVIMECYAETSRAPVSAVGRGRDWVAERTAALAETSEPAVRECLDGRW---- 674

Query: 523 DSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                + I   P A+  L   + ++T+    E  +T+   +   A   K+ F+ ++S+EL
Sbjct: 675 -----FRIDERPTAEGGLVCVYTDITELKHREMEITQAMISAESASSAKSEFLANMSHEL 729

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           R+PL  +IGF DL+K    G L      +YVE I  S + LL+++  ILD +  +     
Sbjct: 730 RTPLNAVIGFADLMKQELFGPLGHDHYREYVEDIIGSGSKLLSMIEVILDFSRSEQVGQS 789

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            + +   LND++  V + ++    + NI + V  D  L     D   L QI   +LSNA+
Sbjct: 790 DSDARCALNDVVGAVVRDLSPIALQKNIDVSVDRDETLPPLNVDGAILYQILQNLLSNAI 849

Query: 700 DFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            FS+ G+ + L+  R  +G    SV ++G  IP+++   V   F        R   GVGL
Sbjct: 850 KFSNPGAPIGLRTFRAADGSAGMSVTDHGVGIPDELIDKVTQPFWQRQGPLVRDHDGVGL 909

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GL+IV+S  +  GG +   S     TT+   +P+
Sbjct: 910 GLAIVKSHTDALGGELKFDSQVGRGTTVTILLPA 943


>gi|301163596|emb|CBW23147.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1022

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 130/233 (55%), Gaps = 6/233 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  R    L +      ++D++K++F+ ++S+E+R+PL  I+GF+DLL  S+     
Sbjct: 625 DITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE---Q 681

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y    L +  + +  S+  ++ 
Sbjct: 682 GDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVT 741

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +++  ++   +     D+ R+ Q+ +  ++NA+ ++ +G+  +     D G  ++ V
Sbjct: 742 NPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDAGIRLY-V 800

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ G  IPE+  + VF+RF       Q  G GLGLSI ++     GG V   S
Sbjct: 801 RDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851


>gi|197336284|ref|YP_002156881.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
           MJ11]
 gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
           MJ11]
          Length = 931

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKTS    L+  Q  Y++ I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTS----LSENQQDYLQTIERSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
            ++NDILD + ++AG + L        D L+EV   +A   HE  + I +  D ++ S  
Sbjct: 340 TIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILK-AARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ NA+ F+ KG+   +V LK  A D  D  F V++ G  I E    
Sbjct: 400 IGDPLRIQQVLNNLVGNAIKFTEKGNIDISVELKHLADDYVDLQFVVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  I+  GG + +SS
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSS 501


>gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
 gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 927

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
 gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
          Length = 927

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|116624972|ref|YP_827128.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228134|gb|ABJ86843.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 614

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 16/234 (6%)

Query: 555 LTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L  KNE L +A E        K+ F+  VS+ELR+PL  IIGF++LL  +KLG L+ +Q 
Sbjct: 361 LRSKNEQLARALEGARAATVAKSRFLASVSHELRTPLNGIIGFSELLYDAKLGHLSGEQI 420

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  I  S+  LL L+NDILDL+ V+AG M+       L  L+ EV+  I       N+
Sbjct: 421 EVMGDILTSARHLLQLINDILDLSKVEAGRMEFRPERSRLQPLVFEVRDVIRPLAERKNL 480

Query: 668 RIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVK 724
              V++       VA  D  R  Q+    LSNA+ F+  G +V ++ AR+    F   V+
Sbjct: 481 ---VLATEVPEDLVAHLDPGRFRQVLYNYLSNAVKFTPAGGSVTVRIARERQLWFQLEVE 537

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  I  +    +F  F  + N+ +   +G GLGL++    +   GG V++ S
Sbjct: 538 DTGIGIAAEEIPRLFQEFSQLPNSRKAD-QGTGLGLALTRHIVEAQGGSVTVRS 590


>gi|332524691|ref|ZP_08400890.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332107999|gb|EGJ09223.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 811

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 130/254 (51%), Gaps = 6/254 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T+   A+R + E  +   +A   K+ F+ ++S+ELR+PL  IIGF++L      G
Sbjct: 554 ALTDITEFREADRTMREARDIAEEASRAKSEFIANISHELRTPLQAIIGFSELGMVR--G 611

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + + +     I A+   +L LVND+LD++ +++ +   +     L  L+ EV + I  
Sbjct: 612 RAHERLASMFGDIHAAGQRMLALVNDLLDVSKIESTVGTFHLERTDLRPLVREVAREIDP 671

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGD 718
            +    + + + +S+G L + V D  R  Q+   +L+NA+ FS  G T+ ++   D    
Sbjct: 672 LLARRRLHLDLALSEGPLVAKV-DPMRFQQVVRNVLANAVRFSPDGETITVRGDVDARNQ 730

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + +V+++G  IP    + +F  FV S+  +    G GLGL+I    +  HGG +   ++
Sbjct: 731 IVVAVRDHGPGIPPGELEKIFEAFVQSSKTKDGSGGTGLGLAICRKIVEAHGGSIQAENA 790

Query: 778 DEGVTTINCRIPSK 791
           D G +     +P++
Sbjct: 791 DGGGSRFTIAVPAR 804


>gi|313148670|ref|ZP_07810863.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137437|gb|EFR54797.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 463

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 144/258 (55%), Gaps = 12/258 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F ++T+ ++ +R L E  E   +++ +K++F+ ++S+E+R+PL  IIGF+DL+  + 
Sbjct: 203 LLRFEDITEKLKVDRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD 262

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ +Y+  +++++ +LL L++DILDL+ ++AG M  +Y+   +N+L+ ++   +
Sbjct: 263 DA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQM 319

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG- 717
             K     ++I             DR RL Q+   +++NAM F+++GS  +    R NG 
Sbjct: 320 QQKNQRPGVQILFTEKEPCCVINTDRLRLSQVIINLMNNAMKFTAEGSITL--GYRLNGQ 377

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  F VK+ G  IP D  + VF RFV  N+     +G GLGL+I    I   GG + +
Sbjct: 378 KNELYFFVKDTGIGIPADKAEKVFERFVKLNSF---VKGTGLGLAICRVIIERLGGTIGV 434

Query: 775 SSSDEGVTTINCRIPSKE 792
            ++ E       R+P +E
Sbjct: 435 DTAVEEGACFWFRLPVQE 452


>gi|265764264|ref|ZP_06092832.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256872|gb|EEZ28218.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1022

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 132/237 (55%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + V D    ER + E  +A     ++D++K++F+ ++S+E+R+PL  I+GF+DLL  S+ 
Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEE 680

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 + +Y++ I+ ++ +LL L+NDILDL+ +++G ++L Y    L +  + +  S+ 
Sbjct: 681 ---QGDKEEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMK 737

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++    +++  ++   +     D+ R+ Q+ +  ++NA+ ++ +G+  +     D G  
Sbjct: 738 QRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDAGIR 797

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ V++ G  IPE+  + VF+RF       Q  G GLGLSI ++     GG V   S
Sbjct: 798 LY-VRDTGIGIPEEKKRKVFHRFEKLDEFAQ--GTGLGLSICKAITESMGGSVGFES 851


>gi|229090988|ref|ZP_04222212.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42]
 gi|228692389|gb|EEL46124.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42]
          Length = 444

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 329

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++G  I
Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 386

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 387 AKEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443


>gi|212692259|ref|ZP_03300387.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|265752877|ref|ZP_06088446.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|212665136|gb|EEB25708.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|263236063|gb|EEZ21558.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 807

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 133/240 (55%), Gaps = 16/240 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  ++   + 
Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  +  ++ +LL L++DILDL+ +++G  +   S   +N L  E+ +S+  K+ 
Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673

Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                ++++ +  L      AD+ RL Q+ S  ++NA+ F+  GS  +    + +G   F
Sbjct: 674 AG---VELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            V++ G  IP +  K+VF+RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 731 YVRDTGMGIPRNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785


>gi|261409329|ref|YP_003245570.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261285792|gb|ACX67763.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 1219

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 14/255 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L ++ + L    + K+ F+ ++S+ELR+PL +++  + LL  +K G+L+SKQ +Y
Sbjct: 523 KARVQLEQQAKQLSITTKYKSEFMANMSHELRTPLNSLLILSQLLSENKDGNLSSKQIEY 582

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S + LL ++++ILDL+ VDAG MK+NY  + L D+   V+Q+ A      +I +
Sbjct: 583 AQTIYMSGSDLLKMIDEILDLSKVDAGKMKINYEDVQLPDIEAFVEQNFAAVASRKHINL 642

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDN--------GD 718
            V I +    S V D  R+ QI   +LSNA  F++ GS    + KA +D          D
Sbjct: 643 GVHIEEDIPQSIVTDSHRVKQILRNLLSNAFKFTNSGSVELQVEKADKDKLPVYLNAESD 702

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           ++ F+VK+ G  IP D    +F  F        R+  G GLGLSI      L GG +++ 
Sbjct: 703 YVAFAVKDTGIGIPADKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGGGITVE 762

Query: 776 SSDEGVTTINCRIPS 790
           S +   +     +P+
Sbjct: 763 SEEGKGSCFTLFLPA 777


>gi|117925745|ref|YP_866362.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609501|gb|ABK44956.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1128

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 135/254 (53%), Gaps = 17/254 (6%)

Query: 536 AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            Q M  +  +TD +RAE    +AL +  +A  +A + K  F+ ++S+E+R+P+  I+G T
Sbjct: 363 GQIMGIYAILTD-IRAEQAAAKALRDARDAAEQASQAKGEFLANMSHEIRTPMNAILGMT 421

Query: 592 DL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            L L+T     LN +Q  ++E + A+ + LL ++NDILD + ++AG +++  +++ ++++
Sbjct: 422 HLCLQTD----LNERQRHFLEKVYAAGSALLRILNDILDFSKIEAGSLEIEKTSLKMDEV 477

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L  +   ++ +  E  I +    D  L    V D  RL Q+   ++ NA+ F+ +G  V 
Sbjct: 478 LASLADLMSIRADEKKIELLFHRDANLPEILVGDPLRLGQVLINLVGNALKFTEQGEVVV 537

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
              ++++A       FSVK+ G  +  +   ++F  F        RR  G GLGL+I   
Sbjct: 538 RIEVIQSAERQVKVRFSVKDTGIGLTNEQMSNIFQSFKQADSSTTRRYGGTGLGLAISHR 597

Query: 764 FINLHGGHVSISSS 777
            + L GG + + S+
Sbjct: 598 LVQLMGGVLKVEST 611


>gi|332293070|ref|YP_004431679.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus
            4H-3-7-5]
 gi|332171156|gb|AEE20411.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus
            4H-3-7-5]
          Length = 1216

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 140/254 (55%), Gaps = 10/254 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T      R L    E   ++D +K++F+ ++S+E+R+P+  I+GF++LL+   +    
Sbjct: 827  DITQQKLLSRELISAKEKAEESDRLKSAFLANLSHEMRTPMNGILGFSELLRRKNISE-- 884

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             K+  Y+E I      LL+ +++I+D++ +++ I+ ++ S + LN ++ ++      K+ 
Sbjct: 885  EKRDIYLELIEKEGHRLLSFISNIVDISKIESNIIHIDNSRVNLNIIIKDIYSKYLLKLE 944

Query: 664  ENNIRIKVISDG--KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + +++ +I  G     SF+  D  +L+QI S +L NA+ F+ +G T+    +    +  
Sbjct: 945  NSGVKL-IIEMGLDDADSFIETDENKLVQIISNLLENAIKFTKQG-TIEFGYSLYEKNLK 1002

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            F VK++G  I E+  K++F+RF +   R Q    GVGLGLSIVE  I L  G V I S  
Sbjct: 1003 FFVKDSGIGIEEEEQKNIFDRF-TQGRREQTHNLGVGLGLSIVEGLIKLLNGEVWIDSQI 1061

Query: 779  EGVTTINCRIPSKE 792
               +T    IP K+
Sbjct: 1062 GEGSTFFFTIPYKK 1075


>gi|312116146|ref|YP_004013742.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
 gi|311221275|gb|ADP72643.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
          Length = 635

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 124/231 (53%), Gaps = 3/231 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+E K++F+ ++S+ELR+PL  I+GF+++++   +G+   + + Y   +  S T LLN+
Sbjct: 382 QANEAKSAFLANMSHELRTPLNAILGFSEIIRDKMIGNDIDRYASYAADVHKSGTHLLNI 441

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VNDILD+  ++AG ++L+   I L+ L++     + ++     + +   +         D
Sbjct: 442 VNDILDVTRIEAGKLELHEDEINLDTLIHRSLLDVQSQALAGGVLLAAPARNLGVVLRGD 501

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           + +L QI   +LSNA+ F++KG  +++ A  + +G     +++ G  +  D  +     F
Sbjct: 502 KGKLKQILVNLLSNAIKFTAKGGRIVISATPEWDGGLCVKIRDTGIGMSGDEIRQALELF 561

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V N    +  G GLGL +      LHGG +++ S     T ++ R P+K
Sbjct: 562 RQVENGLARRYEGAGLGLPLAVRLTELHGGTLTVDSIPGEGTEVSVRFPAK 612


>gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 624

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 20/267 (7%)

Query: 532 PLPNAQTMLTFVNVTD--SVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           PLP     L  V + D   +RA +  L E  EA +  +  K+ F+ ++++E+R+P+  I+
Sbjct: 83  PLPGHGHSLRRVLLRDLTPLRAAKTKLEEAREAAKAGERAKSHFLANITHEIRTPMIGIL 142

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T+L   ++   L+ KQ +Y+E    S+  LL ++NDI+D A ++ G  +L  +   L 
Sbjct: 143 GMTELAMATE---LSPKQREYLEMARHSAQSLLTVLNDIVDYARIETGAFELARTPFSLR 199

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
           + + EV         +  + +     G +  + V D  RL Q+   ++ NA+ F+  GS 
Sbjct: 200 ETVEEVISVFRPLAAKKGLSLTYRCIGAVPQTLVGDPSRLRQVLINLVGNAVKFTDAGSV 259

Query: 708 VILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLG 757
           V+  A      A D     F V++ G  IP D  K++F+ F    VS A R Q  G GLG
Sbjct: 260 VLAVARIGGGQANDQTRLRFEVRDTGIGIPGDKIKAIFDSFTQADVSPARRYQ--GAGLG 317

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTI 784
           L+IV   + +  G  ++ +S+EG  ++
Sbjct: 318 LAIVRQLVEMMQGSYNV-ASEEGKGSV 343


>gi|91222987|ref|ZP_01258253.1| putative two-component sensor [Vibrio alginolyticus 12G01]
 gi|91191800|gb|EAS78063.1| putative two-component sensor [Vibrio alginolyticus 12G01]
          Length = 632

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 127/219 (57%), Gaps = 10/219 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+P+  IIG + LL  +    L+ +Q ++VE I +SS  L+ ++
Sbjct: 240 ANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDT---DLDPQQKEFVEIIDSSSHSLMTII 296

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           +DILD + V+AG ++L Y++  L +LL++V    + K  + N+++    D  L   V  D
Sbjct: 297 DDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQLLSNIDPHLPIEVQGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGD---FIFSVKNNGSSIPEDMCKSVF 739
             RL Q+ + +LSNA+ F+ +G   +L A +R +G+     F V ++G  I ++  +++F
Sbjct: 357 ATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGETAHIRFRVVDSGIGIAKEHQQAIF 416

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            RF        R+  G GLGL+I    +NL GG + ++S
Sbjct: 417 ERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQLTS 455


>gi|330878817|gb|EGH12966.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 383

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 118 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 177

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 178 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFT 237

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  G+  ++ + +     +F V+++G  
Sbjct: 238 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMVVSRQPGAGIVFIVRDSGIG 297

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 298 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 347


>gi|228914596|ref|ZP_04078205.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228933304|ref|ZP_04096160.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826465|gb|EEM72242.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228844915|gb|EEM89957.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 444

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 329

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++G  I
Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 386

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443


>gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 792

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 6/249 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R E  LT        A+E K++F+  +S+E+R+P+  ++G T +L+       +
Sbjct: 398 DVTEYKRLENKLTNTARDANAANEAKSAFLATMSHEIRTPMNGVLGLTQILEKE---ITD 454

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + ++ I +S   L++++NDILD++ ++   + L +S   + ++L+ VK +  +   
Sbjct: 455 PNHREVLQLILSSGNHLVSILNDILDISKIENEALTLEHSPFKMIEILSPVKNTYQSLCS 514

Query: 664 ENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           E  +  +VI +      F+ D  RL QI   ++ NA+ F+ KGS VI       G   F 
Sbjct: 515 EKGLLFEVIDNTPPYTQFIGDEVRLRQILLNLVGNALKFTQKGSIVISVEVNVGGMCRFE 574

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  I  D   SVF +F        R+  G GLGLSIV+S + L GG + + S    
Sbjct: 575 VKDTGIGITPDRLDSVFEKFEQAEASTTRQFGGTGLGLSIVKSLVELMGGEILVDSKVGR 634

Query: 781 VTTINCRIP 789
            +T    +P
Sbjct: 635 GSTFTVLLP 643


>gi|118591464|ref|ZP_01548861.1| two-component sensor/response regulator hybrid [Stappia aggregata
           IAM 12614]
 gi|118435792|gb|EAV42436.1| two-component sensor/response regulator hybrid [Stappia aggregata
           IAM 12614]
          Length = 808

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 12/263 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT+L   +VT+    E  L     +   ++E K+ F+  VS+E+R+PL  ++G   LL+ 
Sbjct: 268 QTVLR--DVTERRLIEEELLAARHSAESSNEAKSRFLATVSHEIRTPLNGVLGMAALLRD 325

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++L     +QS Y+E +  S   LL L++++LD + V+AG + +  + + +  L+  V +
Sbjct: 326 TRL---TKEQSAYIEALETSGETLLLLIDEVLDFSKVEAGKLDIQAAPVRVGALVESVVE 382

Query: 657 SIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
            +A K H  ++ I  + D  L   V  D  R+ QI   ++ N + F+ +G   +    R 
Sbjct: 383 LLAPKAHAKSLEIGSMLDPNLPEEVTLDATRVRQILYNLIGNGIKFTDEGGVAVELTGRS 442

Query: 715 --DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
             D G F+   V+++G    E   + +F  F    H   R+  G GLGL+I +    L G
Sbjct: 443 NPDGGGFLDIDVRDSGIGFDEQEAERLFQEFEQVDHGPARKFGGTGLGLAIAQRLAGLMG 502

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G ++   + +G       +P  E
Sbjct: 503 GEIAAQPAGDGGAQFRVSLPIPE 525


>gi|149178788|ref|ZP_01857370.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
 gi|148842405|gb|EDL56786.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
          Length = 1780

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 139/259 (53%), Gaps = 15/259 (5%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SL 602
            + T     E AL    +  ++A+  K++F+ ++S+E+R+P+T ++G+TDLL    +G   
Sbjct: 1374 DFTQEREGEEALRRSEKQAKQANVAKSAFLANMSHEIRTPMTAVLGYTDLL----IGMEQ 1429

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              ++++Y++ I  +   LL ++NDILDL+ ++AG ++++  +  LN++L +++  +  + 
Sbjct: 1430 EQEKAEYLQNIKRNGNFLLEIINDILDLSKIEAGKLEISQESFSLNEMLADLQSMMRVRA 1489

Query: 663  HENNIR--IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF 719
             E N+   I+ ISD        D +RL QI   ++SNA+ F+  GS  V++   R+  D 
Sbjct: 1490 EEKNLEFGIEFISDLP-ERIETDPKRLRQILLNLISNAIKFTETGSVKVVINFLREKADA 1548

Query: 720  I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            +  F V + G  I       +F  F        R   G GLGL+I +    +  G++S+S
Sbjct: 1549 VLKFDVIDTGIGITPKQQSRLFQSFSQGDASVTRNYGGTGLGLAISQRLAGMLNGNISVS 1608

Query: 776  SSDEGVTTINCRI--PSKE 792
            S     +T +C I  P +E
Sbjct: 1609 SKPGEGSTFSCTINLPVRE 1627


>gi|126658583|ref|ZP_01729730.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126620170|gb|EAZ90892.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 1195

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 135/250 (54%), Gaps = 18/250 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+  + + AL +  E    A+  K+ F+ ++S+E+R+P+  I+GF DLL      
Sbjct: 687 TITDITERKKYQEALEKAKETAEIANNAKSEFLANMSHEIRTPMNAILGFCDLLDKK--- 743

Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +N ++S+ Y+E I+++  +LL+L+NDILDL+ ++AG +K+ Y +I L +++ E+KQ  A
Sbjct: 744 -VNDERSRRYLESITSAGKMLLSLINDILDLSKIEAGKIKIIYKSIQLKEVIFEIKQMFA 802

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
               +  + + + I D      + D  RL QI   ++ NA+ F+ +G   I LK+     
Sbjct: 803 ETAKQKQLELLIDIDDNVPDVIIFDEVRLKQILFNLVGNALKFTEEGYIKITLKSTLFKS 862

Query: 718 D---------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           D            S+++ G  I ED  + +F+ F  +  +  R+  G GLGL+I +    
Sbjct: 863 DNHQKFSHCSLKISIEDTGIGIAEDQQERIFDVFTQSEGQSSRKYGGTGLGLTITKRLTE 922

Query: 767 LHGGHVSISS 776
           +  G + + S
Sbjct: 923 ILEGTIDLDS 932


>gi|225180886|ref|ZP_03734334.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168367|gb|EEG77170.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 497

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 130/247 (52%), Gaps = 9/247 (3%)

Query: 553 RALTEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+ E N+ +   ++   ++ + V  VS+E R+PLT+I GF D +    +     +Q +Y
Sbjct: 245 QAVEETNKTIHEQKRLQALRQNLVASVSHEFRAPLTSIQGFVDAMLEGFIRE--EEQEKY 302

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  ++  L  LVND++DLA++++G ++L Y  +    L  +   S+  +  E +I++
Sbjct: 303 LRVILNNTLHLNRLVNDLVDLASIESGYVQLRYEDVDPYTLAEKALDSVYPQAQEKSIKL 362

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNG 727
           +   +  L +   D  RL QI   +L NA+ ++     + L+A  + D    IF+VK+NG
Sbjct: 363 EYNYEEGLPAIRGDGDRLYQILINLLENAITYTPDEGRIALEAQLSDDKEKVIFTVKDNG 422

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      ++ RF  V  A     +G GLGL+IV   +++H G V++ S+    +  +
Sbjct: 423 QGIPLAEIPYIWERFYKVDKARNRANKGKGLGLAIVRELVHMHNGEVAVKSTPGEGSAFS 482

Query: 786 CRIPSKE 792
             IP +E
Sbjct: 483 VIIPIEE 489


>gi|196047270|ref|ZP_03114485.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196021895|gb|EDX60587.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 453

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++G  I
Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 395

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 396 AKEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452


>gi|115372454|ref|ZP_01459763.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370667|gb|EAU69593.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 498

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 10/247 (4%)

Query: 555 LTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L E+NE LR+       A   K+ F+ ++S+E R+PL  I+G+T++L     G +   Q 
Sbjct: 248 LAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQK 307

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + ++ I ++   LL ++N+ILD+  ++AG M LN S   L +LL EV   +   +    +
Sbjct: 308 RNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKL 367

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNN 726
            +      +L    +DRQ++ QI   +LSNA+ F+ +GS  +    + +   +  SVK+ 
Sbjct: 368 VVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVKDT 427

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++  + +F  F  V ++      G GLGLSI      + GG +++ S+    +T 
Sbjct: 428 GIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTF 487

Query: 785 NCRIPSK 791
              +P +
Sbjct: 488 TLHLPRR 494


>gi|52842393|ref|YP_096192.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629504|gb|AAU28245.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 828

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 162/320 (50%), Gaps = 30/320 (9%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSV----LEYSIIPLPNAQTMLT 541
           + YY ++D   +   I  S ++      GT +   LS+ V    LE  II +     +  
Sbjct: 207 TSYYKKADKIVMDKGISLSLEEPFYCPDGTTKEIYLSNKVPLRDLEGKIIGM-----LGV 261

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++TD  + E  L++  EA  +A+ +K  F+ ++S++LR+PL+ ++G  +L+K      
Sbjct: 262 SVDITDRKKMELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSGVVGMAELMKEQVTDP 321

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   Q QY E+I   S  LL+L++ ILD+ ++ +    +L  +T  +N+ + E+      
Sbjct: 322 V---QVQYAEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTFDINECIAELVHLEMP 378

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
            +    + + V  D K+   +  DR +L +I   +L NA+ F+  G   I    L+   +
Sbjct: 379 SIKLKQLDLIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDSGYIAIDVKLLELNNE 438

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR------GQRRGVGLGLSIVESFINLHG 769
           +G   F++ + G  IPE+    +F+RF    HR      G+ +G G+GL IV+S++NL G
Sbjct: 439 SGLIYFAISDTGIGIPENQQTKIFDRF----HRIIPSSIGKYKGHGVGLHIVQSYVNLLG 494

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + ++S     TT    +P
Sbjct: 495 GEIQVNSEPGVGTTFYFELP 514


>gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1273

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 132/256 (51%), Gaps = 11/256 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + ++VT+   AE  L ++ E    A++ K+SF+  +S+E+R+PL  +IG  DLL  +   
Sbjct: 582 SLIDVTERNEAE-VLRQQKEMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCET--- 637

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + +Q +YV     S+  LL L+NDILD + ++AG ++L+ S   L  L+ +V    A 
Sbjct: 638 DTDQQQGRYVSIAKNSAESLLCLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAH 697

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDN 716
           +     + +      ++ S V  D +RL QI   ++ NA+ F+  G   I  AA   RD+
Sbjct: 698 RAASKGLELSCHILPEVASRVLGDSERLRQILINLIGNAIKFTEVGEIRINVAATSTRDH 757

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             ++ F V++ G  IPED+ + +F  F        R+  G GLGL+I      L GG ++
Sbjct: 758 EQWVRFEVQDTGVGIPEDIQQRLFQPFEQADASTTRKFGGTGLGLAICRELAILMGGKIT 817

Query: 774 ISSSDEGVTTINCRIP 789
           + S      T +  IP
Sbjct: 818 VDSQLGSGATFSLEIP 833


>gi|217977833|ref|YP_002361980.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503209|gb|ACK50618.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 494

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 6/259 (2%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P    +  F NVTD   A     E + A   AD  K+ F+ +VS+ELR+PL  IIGF+++
Sbjct: 198 PERSAVAIFRNVTD---AHWRQDELDSAGTAADLSKDHFLANVSHELRTPLNAIIGFSEI 254

Query: 594 LKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L  +     + +KQ +Y   I  S   LL++VN ILDL+ + +G   L+ S   +  L+ 
Sbjct: 255 LGDADQAPRDPAKQREYAAIIHRSGQHLLSVVNSILDLSKIHSGSFDLSPSHFGVAPLVE 314

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                +  +  + +I +K +    L   V D++   QI   +LSNA+ F+     V +  
Sbjct: 315 VCCDMVKLEAQDRHIELKRVCPEGLPEIVGDKRACKQIVINLLSNAVKFTPAHGEVSISV 374

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
           + ++   + +V ++G  I E     + N F        R   G GLGLSIV   + LHGG
Sbjct: 375 SIEDETLLIAVADSGVGINEQDLARLGNPFFQARGALDRPFEGTGLGLSIVSGLVGLHGG 434

Query: 771 HVSISSSDEGVTTINCRIP 789
            ++++S  +  T +  R+P
Sbjct: 435 SIAVASEPDQGTCVLVRLP 453


>gi|148559609|ref|YP_001259471.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|223635610|sp|A5VRX4|PDHS_BRUO2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|148370866|gb|ABQ60845.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
          Length = 1035

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGRQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 561

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 10/247 (4%)

Query: 555 LTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L E+NE LR+       A   K+ F+ ++S+E R+PL  I+G+T++L     G +   Q 
Sbjct: 311 LAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQK 370

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + ++ I ++   LL ++N+ILD+  ++AG M LN S   L +LL EV   +   +    +
Sbjct: 371 RNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKL 430

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNN 726
            +      +L    +DRQ++ QI   +LSNA+ F+ +GS  +    + +   +  SVK+ 
Sbjct: 431 VVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVKDT 490

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++  + +F  F  V ++      G GLGLSI      + GG +++ S+    +T 
Sbjct: 491 GIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTF 550

Query: 785 NCRIPSK 791
              +P +
Sbjct: 551 TLHLPRR 557


>gi|255008320|ref|ZP_05280446.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313146041|ref|ZP_07808234.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134808|gb|EFR52168.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 870

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 3/238 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  LT   +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G    +   ++E
Sbjct: 632 EEQLTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIE 690

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +  +LL L+NDILDL+ +++G M   ++   L  L+  V  S    M      +  
Sbjct: 691 TINKNCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQQLNMPSGVRLVLK 750

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + +      V D  RL Q+ + +++NA  F+++GS        + G     V++ G  I 
Sbjct: 751 LPENSKKYLVTDNVRLQQVVNNLINNAAKFTTQGSITFGYTEEEPGYTSIFVEDTGKGIS 810

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  + +F RF       Q  G GLGLSI ++ I    G ++++S +   T    R+P
Sbjct: 811 EDGLRHIFERFYKVDSFTQ--GAGLGLSICQTIIGRLNGVITVTSKEGKGTRFTVRLP 866


>gi|224535688|ref|ZP_03676227.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522698|gb|EEF91803.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 980

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 129/240 (53%), Gaps = 9/240 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  R E+AL    E   +++ +K++F+ ++S+E+R+PL  IIGF+ LL T++      
Sbjct: 594 ITERKRQEKALVTAREKALESERLKSAFLANMSHEIRTPLNAIIGFSSLLTTTE---DEH 650

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +++  I  ++ +LL L++DILDL+ ++A  +  NY  + LN L  +V++++  ++ +
Sbjct: 651 EREEFISIIENNNQLLLQLISDILDLSKIEANTLDFNYQNVDLNGLARDVERTVRRRL-Q 709

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            N+ +  I          +R RL Q+   +L NA  F+S GS       R   +  F VK
Sbjct: 710 PNVVLNFIPGVTECHVQTERNRLSQVLINLLVNASKFTSTGSITFGYEIRGE-ELYFYVK 768

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGVT 782
           + G  I ++    +F RF       Q  G GLGLSI ++ I    G + + S   D+G T
Sbjct: 769 DTGRGISQEDQNKIFERFTKVDTFTQ--GTGLGLSICKNIIEKMKGRIGVESEGKDKGST 826


>gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 509

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 28/259 (10%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ ++ K  FV  +S++L+SP+T ++G  DL++ SKLG +   QS+Y+     S   ++
Sbjct: 251 LKELEQEKEDFVSMLSHDLKSPITAVVGSIDLVRESKLGPVTPDQSEYLNAAIESCEEMV 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +++ +L +   +AG MKLN+       L+N       T      IR+       L +  
Sbjct: 311 EMIDTLLGIHKFEAGKMKLNFREEDPVLLINRSAAKFQTPAQRGAIRLFTTLPASLPAIS 370

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARD--------------------NGDF 719
           ADR    +I   +LSNA+ F+ +G  + + A   +D                     G+F
Sbjct: 371 ADRSLFSRILGNLLSNAVKFTPEGGEIEVSADLVQDPAPVLAHVPQECYPGQELPSEGEF 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV-SIS 775
           +   V+++G  IP++   S+F+RFV   N  +G+ RG GLGL+     ++ HGG++ + S
Sbjct: 431 VRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGLGLAFCRKAMDAHGGYIWAKS 490

Query: 776 SSDEG--VTTINCRIPSKE 792
              EG   T +   +P +E
Sbjct: 491 EPGEGSVFTVLFPALPEEE 509


>gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 865

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ IK+ F+  +S+ELR+PL  I+G++ LL++ +  +  + ++  +E I  ++T+   L+
Sbjct: 490 ANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDRA--LETIERNATLQTQLI 547

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            D+LD++ +  G + LN   + L  ++     ++        I+I+ + D +LG  + D 
Sbjct: 548 EDLLDVSRILQGKLSLNVCPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPELGQVMGDA 607

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            RL Q+   +LSNA+ F+S G TV   LKA  D       V + G  I  +    VF+ F
Sbjct: 608 NRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQ--IQVIDTGKGITPEFLPYVFDYF 665

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                   R+  G+GLGL+IV   + LHGG V  +S  EG+  T    +P
Sbjct: 666 RQADGTTTRKFGGLGLGLAIVRQVVELHGGTVQATSPGEGLGATFTVNLP 715


>gi|86147383|ref|ZP_01065696.1| sensor histidine kinase FexB [Vibrio sp. MED222]
 gi|85834811|gb|EAQ52956.1| sensor histidine kinase FexB [Vibrio sp. MED222]
          Length = 795

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  IIG + +L  S+L +   KQ Q 
Sbjct: 264 RDITERKEHQESLEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQLTTEQRKQMQT 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S+  L N+ NDI+D+   D   ++L  + I   D + E++   A    +  +R 
Sbjct: 324 ---IKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVVEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L S V  D  RL Q+   ++SNAM F+  G  V+  +A  +GDF      V++
Sbjct: 381 DLERLSDLPSAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSAEIDGDFANITMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++ +  IN+  GH+ + +S+EG  
Sbjct: 441 TGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLINMMDGHIEV-TSEEGFG 499

Query: 783 ---TINCRIP 789
              TI+ R+P
Sbjct: 500 STFTISIRVP 509


>gi|311898710|dbj|BAJ31118.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1549

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 123/252 (48%), Gaps = 27/252 (10%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L +A   K+ F+ ++S+ELR+PL +++    LL  +  G+L++KQ ++ 
Sbjct: 1081 ARQILEERAEQLSQASRYKSEFLANMSHELRTPLNSLLILAKLLSDNNEGNLSAKQVEFA 1140

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M +  + I L  L++ V+ +      + N+   
Sbjct: 1141 ETIHGAGSDLLQLINDILDLSKVEAGKMDVRPARIALVQLVDYVEAAFRPLAADKNLDFA 1200

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------------------- 710
            V +S     +   D QRL Q+   +LSNA+ F+  G+  ++                   
Sbjct: 1201 VRVSPELPPTLHTDEQRLQQVLRNLLSNAVKFTDNGAVELMIRPVAGPEIPQHVREQLLE 1260

Query: 711  ---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESF 764
                A  D     FSV + G  IP D  + +F  F   A  G  R   G GLGLSI    
Sbjct: 1261 SGTMADPDEPLIAFSVADTGIGIPGDKLREIFEAF-KQADGGTSRKYGGTGLGLSISREI 1319

Query: 765  INLHGGHVSISS 776
              L GG + + S
Sbjct: 1320 ARLLGGEIHVES 1331


>gi|86750506|ref|YP_487002.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86573534|gb|ABD08091.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 530

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 11/234 (4%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G+       
Sbjct: 244 EQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPV 301

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y EY   I  S   LLNL+N+ILDL+ ++AG  +LN   I L  ++ +    +  +    
Sbjct: 302 YKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRASSR 361

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724
            I I  + +  +     D + + Q+   +LSN++ F+ +G  + LK     +G    SVK
Sbjct: 362 GITIHEVFEQGMPRIWGDERAVRQVVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVK 421

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + GS IPE+    V   F   SN+ +   +G GLGL I +S +++HGG  ++ S
Sbjct: 422 DTGSGIPEEEIPVVLASFGQGSNSIKSAEQGAGLGLPIAKSLVDMHGGTFTLKS 475


>gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
 gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
          Length = 916

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 274 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 329

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 330 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 389

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 390 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 491


>gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 1034

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 124/243 (51%), Gaps = 9/243 (3%)

Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER   L+  N  L +A   K+ F+  +S+ELR+PL  I+ F++LL+    G +N +Q +
Sbjct: 621 AERTADLSRTNAELNRALRTKDEFLATMSHELRTPLNGILSFSELLQEEISGPINEQQRR 680

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++YI +S   LL L+NDILDL+ V+AG M+++     + ++       +    +   ++
Sbjct: 681 SLQYIESSGRHLLALINDILDLSKVEAGRMEIHSEIYSVVEICEASLLFVKELANRKGLQ 740

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNN 726
           +       L     D +RL Q+   +LSNA+ F+  G  V+L+   D   G   F V + 
Sbjct: 741 VGFSCSDNLAIIEVDAKRLKQMLINLLSNAVKFTPDGGQVLLEVTTDATAGVIRFVVSDT 800

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +  + +F  F  + ++   Q  G GLGL++V    +L GG + + S  EG    
Sbjct: 801 GIGIKAEDMERLFRPFTQLDSSLSRQHEGTGLGLALVRRLADLMGGSIGVESDGEGQ--- 857

Query: 785 NCR 787
            CR
Sbjct: 858 GCR 860


>gi|258627627|ref|ZP_05722403.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
 gi|258580070|gb|EEW05043.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
          Length = 1586

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 125/258 (48%), Gaps = 16/258 (6%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            N+TD +  E+ L +      +A + K+ F+ + S+E+R+PL  I+G T LL      SL 
Sbjct: 817  NITDRLAFEQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDE---SLT 873

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q + V+ I  S   LL +VND+LDL+ ++A  M L    + L + L EV    +T+  
Sbjct: 874  ESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAE 933

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV---------ILKAA 713
              N+  K+     L  +V AD  RL QI + +LSNA+ F+S G            I K A
Sbjct: 934  AKNLDFKLEIGVDLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALRAEIIDKFIWKGA 993

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
              N    FS+ + G  I E+  K +F  F        RR  G GLGLSIV   + L  G 
Sbjct: 994  EKN-IVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGK 1052

Query: 772  VSISSSDEGVTTINCRIP 789
            + + S +   +T    +P
Sbjct: 1053 IGVESREGQGSTFWTDMP 1070


>gi|116750047|ref|YP_846734.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699111|gb|ABK18299.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 610

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 165/363 (45%), Gaps = 41/363 (11%)

Query: 427 TKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN- 482
           T    L++ Q  T   +D LS+ VAV  P G ++L+N   R ++      LSP + I + 
Sbjct: 254 TDRARLLRTQRATQSALDTLSDAVAVCSPAGEVELANDTARRVFN-----LSPESTIESA 308

Query: 483 ----IAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
               I    +R   E       G+D  A  +    +ER  L G + +L +   ++ +   
Sbjct: 309 GNEKIGELFARVRREMRAVRHQGYD-SAIQVFREGEERFYLPGGIPILDE---DHQL--- 361

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             A   L   +VT               +R+ DE+K+  +  VS+EL++PLT++     +
Sbjct: 362 --AGITLVLTDVT--------------GVRRLDEVKSGLISTVSHELKTPLTSVRLAAHV 405

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L + KLG LN KQ + +      S  L  ++ ++LD++ ++    K+  S +    ++ +
Sbjct: 406 LLSEKLGPLNPKQVEILVAAREDSDRLYQIIENLLDISRIETDRSKIRLSPVDTEQMVLQ 465

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               + +   +  + + +     +   +A+   L  +F+ +LSNA+  +  G  V + A 
Sbjct: 466 ATDEMRSAYMDRKVTLVLDLPEDVPPVLAEAFYLESVFANLLSNALRHTPAGGRVTVSAR 525

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R      FSV++ GS IP +    VF +F     R +RR  GLGL+I    +  HGG + 
Sbjct: 526 RKGDAVQFSVEDTGSGIPAESLPHVFEKFYRGPGREERRDSGLGLAIAREIVEAHGGTIG 585

Query: 774 ISS 776
           + S
Sbjct: 586 VVS 588


>gi|253581814|ref|ZP_04859038.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           varium ATCC 27725]
 gi|251836163|gb|EES64700.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           varium ATCC 27725]
          Length = 617

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 125/219 (57%), Gaps = 4/219 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ D++K+ FV  VS+E R+PLT+I    +LLK   +G++N  Q + ++ I   S  L 
Sbjct: 383 LKEIDQMKSDFVSTVSHEFRTPLTSIGMAVELLKDGSVGTINETQQELLKVIKEDSERLN 442

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+LDL+ +++G   L +    +  ++     S+       N++I++ + G     +
Sbjct: 443 VLIKDLLDLSRLESGKTHLKFEKNNIKKIIETTVNSLKNLSENRNVKIEIKNVGSSLFVL 502

Query: 682 ADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           AD  +++ + + +++NA+ + S  +   +I++A +   + + SV++NG  IPE+  + +F
Sbjct: 503 ADINKIILVLTNLITNAIKYKSEEREGHIIIEAFKKEKNIVVSVEDNGRGIPEEYIEKIF 562

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           N+F  V  ++ G+  G GLGLSI +  I  HGG + + S
Sbjct: 563 NKFIQVKVSNEGKIEGTGLGLSICKEIIKNHGGEIWVDS 601


>gi|118477428|ref|YP_894579.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118416653|gb|ABK85072.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 465

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 11/239 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEY 612
           +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  
Sbjct: 234 SLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI-- 291

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671
           IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK 
Sbjct: 292 ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIKT 351

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I   +L   + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++G  I 
Sbjct: 352 IERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGIA 408

Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 409 KEHLPYIEQSFYQINNH---TTGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 464


>gi|91976523|ref|YP_569182.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
 gi|91682979|gb|ABE39281.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 530

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 11/234 (4%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G+       
Sbjct: 244 EQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVPV 301

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y +Y   I  S   LLNL+N+ILDL+ ++AG  +LN   I L  ++++    +  +    
Sbjct: 302 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVSDCHHLLKLRASSR 361

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724
            I I  + +  +     D + + Q+   +LSNA+ F+ +G  + LK     +G    SVK
Sbjct: 362 GITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVK 421

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + GS IPE+    V   F   SN+ +   +G GLGL I +S +++HGG  ++ S
Sbjct: 422 DTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLVDMHGGTFTLKS 475


>gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
 gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
          Length = 927

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|186682598|ref|YP_001865794.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186465050|gb|ACC80851.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 657

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 171/395 (43%), Gaps = 70/395 (17%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-------TCSRYY 491
           T D + +GV +    G I   N A   ++    + +    H   +AA       TC R  
Sbjct: 143 TFDSIKDGVCLVDTKGIILRCNLAITQIFCKPSHEILGCAHHNLMAAELGIGDGTCFRRA 202

Query: 492 NES-----------DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            E+           + W  FA  I    DE  +L G + +LSD                 
Sbjct: 203 KETHQRQVLEFQSTERW--FAKTIDPVLDEHGTLTGAVFILSD----------------- 243

Query: 541 TFVNVTDSVRAERALTEKNEALRK--------------ADEIKNSFVQHVSYELRSPLTN 586
               +T+  RA   L E+N+ L +              A+ IK+ F+  +S+ELRSPL  
Sbjct: 244 ----ITERKRASALLQEQNDRLNQLMISLQQQTEQAQQANRIKDEFLAVLSHELRSPLNP 299

Query: 587 IIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           I+G+  +L+TS+    ++ ++QY +E I  ++ +   L+ D+LD++ +  G + LN   +
Sbjct: 300 ILGWAKILQTSR---QDAAKTQYALETIERNAKLQAQLIEDLLDVSRILQGKLSLNTVPV 356

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L   +    +++       +I+I+ I +   G  + D  RL Q+   +LSNA+ F+ +G
Sbjct: 357 GLTFTIKAALETVRLAAEAKSIQIQTIFEPNAGQVLGDSGRLQQVVWNLLSNAIKFTPQG 416

Query: 706 STVILKAARDNGDF--------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
             V ++  R   +           SV + G  I  D    VF+ F        RR  G+G
Sbjct: 417 GQVEVRLERIENELDTHPSEYTQISVSDTGMGISADFLPYVFDYFRQADGTTTRRFGGLG 476

Query: 756 LGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           LGL+IV   + LHGG +  +S  EG   T   + P
Sbjct: 477 LGLAIVRHLVELHGGSIQAASPGEGQGATFTVKFP 511


>gi|209547989|ref|YP_002279906.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
 gi|209533745|gb|ACI53680.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
          Length = 1296

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + 
Sbjct: 1039 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1098

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Y+EY   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++E    +  
Sbjct: 1099 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1156

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  + + NG  
Sbjct: 1157 QANGQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1216

Query: 720  IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  V++ G  +     D     F +  S   R +  G GLGL + ++ ++ +    SI+S
Sbjct: 1217 VLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAVFSINS 1276

Query: 777  SDEGVTTINCRIPSK 791
            +    T +    PS+
Sbjct: 1277 APNEGTLVEITFPSQ 1291


>gi|158337549|ref|YP_001518724.1| circadian input kinase [Acaryochloris marina MBIC11017]
 gi|158307790|gb|ABW29407.1| circadian input kinase [Acaryochloris marina MBIC11017]
          Length = 735

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 4/235 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A + +++ K+ F+  +S+ELR+PLT +IG +  L    LG L  KQ   ++ I  S   L
Sbjct: 362 AAQSSNQAKSDFLATMSHELRTPLTCVIGMSATLLRWSLGPLTDKQRSCLQTIHDSGEHL 421

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRIKVISDGKLG 678
           L L+NDILD + V +G   LN S   L  L+ ++ Q +  K   H+  ++  +    +  
Sbjct: 422 LELINDILDFSHVQSGKATLNVSDFSLTTLVQQLLQVMRDKADAHQVQLKANLKIPPERD 481

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F+AD +R+ QI   +  NA+ F+  G  V L+   +    +F V++ G  I       +
Sbjct: 482 RFIADLRRVQQILISLTDNAIKFTPMGGKVTLRVWVETNTVVFQVEDTGIGISSSQLPHL 541

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F +F  +  ++     G GLGL++ +  + LH G + +SS +   +    ++P++
Sbjct: 542 FEKFQQLDGSYHRTYEGAGLGLALAQQCVTLHQGWIDVSSEEGQGSIFTVQLPNQ 596


>gi|255009881|ref|ZP_05282007.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147668|ref|ZP_07809861.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136435|gb|EFR53795.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 409

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 140/244 (57%), Gaps = 12/244 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q +LT  ++T+    +R L+ + E    A+++K++F+ ++S+E+R+PL  IIGF+ LL +
Sbjct: 158 QMLLTIYDITELKNTQRLLSIEKENAVSAEKLKSAFIANMSHEIRTPLNAIIGFSGLLAS 217

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +     ++++  Y++ ++ ++  LL +V D+LDL+ +++G +  +YS   +NDLL  +  
Sbjct: 218 T---DDDAEKKMYLDIVAENNHRLLQIVTDVLDLSKIESGSLDFHYSRFDVNDLLCGLHG 274

Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +  ++ ++   IK++ +     ++  +++QR++QI + ++ NA+ F+  G   I    R
Sbjct: 275 ILEIRL-KDKPDIKLVCEAGTDEWMIYSEQQRIVQILTNLVHNAIKFTQNGE--IRFGCR 331

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +G  D  F V + G  IP      +F+RF    H  +  G GLGL++ ++ +   GG +
Sbjct: 332 PHGETDVYFYVSDTGIGIPVGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQSLGGEI 389

Query: 773 SISS 776
            + S
Sbjct: 390 GVES 393


>gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 908

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 134/247 (54%), Gaps = 6/247 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VN T   +  + L E  +    +D +K++F+ ++S+E+R+PL  I+GF++L+  S+  + 
Sbjct: 524 VNNTKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPA- 582

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y+  I +++ +LL L+NDILDL+ +++GI++    T  L  + NE+   I  K+
Sbjct: 583 --EKEEYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCNELYTMIQPKI 640

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              ++  ++ + G       DR RL Q++   L+NA+  +  G   +  +    G  I+ 
Sbjct: 641 TNPDVEFQMDNSGPDCWIFLDRSRLKQVWMNYLTNAVKCTKSGYIKMGYSIEREGIRIY- 699

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V+++G  IPE++ + VF RF       Q  G GLGL+I  + I   GG V  +S+    +
Sbjct: 700 VEDSGVGIPEELQERVFGRFQKLNEFAQ--GTGLGLAISRAIIEGAGGEVGFTSTPGIGS 757

Query: 783 TINCRIP 789
           T    IP
Sbjct: 758 TFWAWIP 764


>gi|294054929|ref|YP_003548587.1| integral membrane sensor signal transduction histidine kinase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614262|gb|ADE54417.1| integral membrane sensor signal transduction histidine kinase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 449

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 27/287 (9%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSV----------RAERALTEKNEALRKADEIKNSFVQHV 576
           +YS IPL +    + F+ +  +V          R  R + E  +A+ KAD  K  F+  +
Sbjct: 144 QYSGIPLGSDLYAMLFILIVIAVCIDLFIMNTRRNIRVIRESKQAIEKADRTKTEFLMLM 203

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELRSPL  I+GF+ LL+       + +Q +Y+ YI  SS  LL+++  +L+ + +  G
Sbjct: 204 SHELRSPLNPILGFSSLLEEDI---EDPEQKRYLAYIKESSVRLLDMIEAVLEYSCLADG 260

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RIKVISDG--KLGSFVADRQRLLQI 690
            + L    + L DL  E++  +   +    +      + + +   K  +   DR R++Q+
Sbjct: 261 SVPLKPVCVALEDLCEEIQTHLLPGVEAKGLDWGFSCQALDEPADKAFTLTMDRDRVVQV 320

Query: 691 FSKILSNAMDFSSKGST-VILKAARDN----GDFIFSVKNNGSSI-PE--DMCKSVFNRF 742
              +LSNA+ +S  G   V L+   D      D    ++++G  I PE  D     F + 
Sbjct: 321 IRHLLSNAIRYSDSGRVEVELRVECDGVEGPADLFCRIEDSGPGIAPEDADAVYEPFKQL 380

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +  +    G+GLGL+     +NL GG +S   +  G T   CRIP
Sbjct: 381 DEDVSKRSGSGLGLGLATCSKLVNLMGGSLSHEPAKSGGTCFTCRIP 427


>gi|284053245|ref|ZP_06383455.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 252

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 10/225 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTILLNLVN 625
           K+ F+  +S+ELR+PL  I+GFT L++     S N   S   +++E I  S   LL L+N
Sbjct: 2   KSEFLARMSHELRTPLNAILGFTQLMERELYHSPNIPLSDHKEHLEIIGRSGEHLLELIN 61

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           D+L+++ ++AG + LN +   L  LLN +++ +        + +    D  + +++ AD 
Sbjct: 62  DVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDHIPTYIYADE 121

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           Q+L Q  + +L NA+ F+ +G  ++     K   D G   F V++ G  I       +F 
Sbjct: 122 QKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLFE 181

Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            F  +   R  ++G GLGLSI + FI L GG + + SS+ G  TI
Sbjct: 182 PFSQTETGRNSQQGTGLGLSITQKFIGLMGGEIQV-SSERGKGTI 225


>gi|149925387|ref|ZP_01913651.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
 gi|149825504|gb|EDM84712.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
          Length = 998

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 129/252 (51%), Gaps = 22/252 (8%)

Query: 544 NVTDSVRAERALTE------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKT 596
           ++  S R ++AL E      + E  +    IK+SF+ ++S+E+R+P+  I+G T L LKT
Sbjct: 300 DLEKSERVKQALEEVSLANVEKERAKNESRIKSSFLANMSHEIRTPMNAILGMTALTLKT 359

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                LN KQ  Y+  I  S   LL+L+N ILDL+ +++ + KL      L+D+L EV  
Sbjct: 360 D----LNEKQKDYLTKIQLSGDNLLHLLNSILDLSKIESDMFKLEQRPFRLDDVLEEVFG 415

Query: 657 SIATKMHENNIRIKVISDGK-----LGSFVADRQRLLQIFSKILSNAMDFSSKG----ST 707
           ++     + NIR+     GK     L   V D  R+ QI   ++ NA+ F+S+G    + 
Sbjct: 416 TLGNSALDKNIRLLYTLQGKGLQSTLNRLVGDSLRVGQILKNLIGNAIKFTSEGHINLTV 475

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +LK   D     FSV + G  + +D  + VF++F        R   G GLGLSI +  +
Sbjct: 476 KVLKQLDDQVTLQFSVSDTGIGMSKDQLQRVFDKFTQADSSTTRMFGGSGLGLSIAKELV 535

Query: 766 NLHGGHVSISSS 777
           +L  G +   S+
Sbjct: 536 HLMEGDIHAHST 547


>gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 916

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 274 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 329

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 330 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 389

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 390 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 449

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 491


>gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227082574|ref|YP_002811125.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236]
 gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236]
 gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
          Length = 927

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|91772833|ref|YP_565525.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711848|gb|ABE51775.1| pleC (Non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 519

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 130/239 (54%), Gaps = 2/239 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L + N+ L+  D +KN F+ ++S+EL++PL +I G+ +L+    LG+LN +Q + V  
Sbjct: 280 KELEKVNDDLKSLDVMKNEFLSNISHELKTPLVSIKGYVELVFDGSLGTLNEQQKKAVNI 339

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +S  L  L+  +L ++ +++  ++ +   + + ++++ V   +  ++ +  + I+  
Sbjct: 340 VLRNSERLRRLIESLLFISGLESRAIQYHIEKVRIAEIIDNVVNDVNLQIEDKGLLIENN 399

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L     D+ RL  + + ++ NA+ F+     +IL A  +  D    VK+ G  IP+
Sbjct: 400 VPENLPLINGDKARLSDMLTNLVDNAIKFTPSEGRIILNAYEEEDDLHIEVKDTGIGIPK 459

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++  ++F RF       +RR  G G+GL I ++ +  H G++ I S +E  TT++ R+P
Sbjct: 460 ELIPNLFQRFYQVDASIKRRYGGTGVGLYICKNIVEAHKGNIWIESEEEKGTTVHIRLP 518


>gi|229132846|ref|ZP_04261691.1| hypothetical protein bcere0014_17750 [Bacillus cereus BDRD-ST196]
 gi|228650673|gb|EEL06663.1| hypothetical protein bcere0014_17750 [Bacillus cereus BDRD-ST196]
          Length = 438

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 128/232 (55%), Gaps = 9/232 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASST 618
           + + KA+++KN F+  +S+E+R+PLT I G+++ LKT  +  L  ++ +  +  IS  + 
Sbjct: 213 DKIEKAEQLKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTDEEVKVGMGIISGETD 270

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L++LV ++LD + + +    L    + L D+L E    +  K  E  I +  +++ +  
Sbjct: 271 RLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKQIHL--VANLERV 328

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             V DR RL Q+F  I+ NA+ +S++ STV ++A +  G  +  V + G  I ++    +
Sbjct: 329 ELVGDRNRLKQVFLNIIHNAIKYSNEKSTVYIEATKSEGQAVIKVTDQGIGIAKEHLPFI 388

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              F   N H     G G+GL+IV+  + LHGG +SI+S +   TTI  ++P
Sbjct: 389 EQSFYQINNH---IEGAGIGLAIVKKMVELHGGTLSITSRERVGTTILIKLP 437


>gi|149375878|ref|ZP_01893645.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
 gi|149359758|gb|EDM48215.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
          Length = 1054

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 2/230 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ +++K  F+  VS+ELR+PLT++ G   L+   +LG +  K  + +     +S  L +
Sbjct: 563 KRLEQMKTEFISTVSHELRTPLTSVSGAIGLVLGGRLGDIPEKAQELLNTAQRNSERLAH 622

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+LD   + AG +  +     +  +L +  +   T   E N+++ +       S   
Sbjct: 623 LINDLLDTDKIAAGKIHFDMQVTPIIPILEQSLEENRTYCAEQNLKLVLTRKLTQTSVKV 682

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+ + +LSNA+ FS  G TV ++A   + D   SV + G  IPED    VF +F
Sbjct: 683 DVQRLKQVLANLLSNAIKFSPDGGTVSIEATSTDTDITVSVVDQGPGIPEDFQHKVFQKF 742

Query: 743 VS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               ++   Q+ G GLGL+I    +   GG +   +++   T     +P+
Sbjct: 743 AQADSSDTRQKGGTGLGLAITRELVKRMGGTIGFETTEGKGTRFFFTLPA 792


>gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 742

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 95  QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 150

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 151 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 210

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  +   A D+ +  F V++ G  I E    
Sbjct: 211 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 270

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 271 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 312


>gi|70731183|ref|YP_260924.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68345482|gb|AAY93088.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 775

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 5/247 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD   AE AL    E    A   K+ F+  +S+ELR+PL  I+GF  LL        N
Sbjct: 380 DITDRRAAEIALGTAREEAESASRAKSEFLSRMSHELRTPLNAILGFAQLLDMDS----N 435

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q   V +I  +   LL L+N++LD+A ++AG + LN   + L  +L+E    ++    
Sbjct: 436 AGQRPQVGHILRAGQHLLGLINEVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAA 495

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  I +  + +    S  +ADRQRL+Q+   +LSNA+ ++  G  V +  A +      S
Sbjct: 496 DAGITLAPLPELAADSGVIADRQRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEASRLRLS 555

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G+ I  +  + +F  F       +  G GLGL++  S + +  G + + S+    +
Sbjct: 556 VLDTGAGITAERLERLFKPFERLDADPRVEGTGLGLALSRSLLEMMDGSLGVQSTPGSGS 615

Query: 783 TINCRIP 789
                +P
Sbjct: 616 CFTLELP 622


>gi|83950383|ref|ZP_00959116.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
 gi|83838282|gb|EAP77578.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
          Length = 540

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 4/229 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  + +F+  +++ELR+PLT+I G   LL     G L       +     +   LL L
Sbjct: 296 EAEATRRNFMSMMTHELRTPLTSIKGAVQLLTAGTAGPLEPGVMSLLRIAENNGERLLGL 355

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VNDILDL+ ++AG M+     + L  L++E  +S A       + ++  S         D
Sbjct: 356 VNDILDLSKLEAGKMEFTMGRMDLRALIDEAIESDAGYATGLGVTLRCKSPETPLWVTGD 415

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
           + RLLQ+ + ++SNA  FS  GS V + +AR NGD I  ++ + G  IPE     +F  F
Sbjct: 416 KGRLLQVLTNLMSNAAKFSETGSQVEI-SARPNGDMIRVAISDRGPGIPEAARAGLFEPF 474

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +G+ +G GLGL+IV++ +  H G V   S     TT    +P
Sbjct: 475 KQAGAQDKGRIKGTGLGLTIVKAIVEHHDGRVDFVSELGKGTTFYFDLP 523


>gi|160897314|ref|YP_001562896.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160362898|gb|ABX34511.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 842

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 132/269 (49%), Gaps = 13/269 (4%)

Query: 535 NAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           NAQ  +T     FV+V++   AE A  E  +A  +A  +K+ FV ++S+ELR+PL +I+G
Sbjct: 569 NAQGRITGVLSIFVDVSEFRAAEHATREARDAAEEAFRVKSEFVANMSHELRTPLQSIMG 628

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F +L      G  N   +     I  +   +L LVND+LD+A +++ +  ++     L  
Sbjct: 629 FAELGGLRSRG--NPAMADMFNDIHEAGIRMLALVNDLLDVAKLESAVGTIHVERTDLRS 686

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+  V + +  +  +  I +++  D       AD  R  Q+   +L+NA+ FS  G  + 
Sbjct: 687 LIRPVVRELEPQQQQKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRID 746

Query: 710 LKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINL 767
           ++   D  GD   +V + G  IP      +F  FV S+  R    G GLGL+I    I+ 
Sbjct: 747 VQGRIDEQGDICIAVSDQGPGIPPQELDKIFQPFVQSSKTRNGSGGTGLGLAICRKIIDA 806

Query: 768 HGGHVSISSSDEGVT----TINCRIPSKE 792
             G ++ S+  EG +    T+ CR  + E
Sbjct: 807 MDGTIAASNRSEGGSLFRITLPCRTGASE 835


>gi|209525455|ref|ZP_03273995.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494135|gb|EDZ94450.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1019

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
           AL E  +    A+  K+ F+ ++S+E+R+P+  I+GF DLLK    G + + KQ  Y++ 
Sbjct: 522 ALEEVAKRAEMANRAKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDDKQQSYLDA 577

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+A    L++L++DILDL+ ++AG ++L Y  + L  LL E++Q          + +++ 
Sbjct: 578 IAAGGRALISLIDDILDLSKIEAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQIN 637

Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
            +  +   +A D  RL QI   I+ NA+ F+  GS  I   A++  D         V + 
Sbjct: 638 FEPNVPKIIAFDEVRLRQILFNIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADT 697

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           G  I  D  + +F  FV +  +  RR  G GLGL+I     +L GG +++ S 
Sbjct: 698 GIGINPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQ 750


>gi|261406146|ref|YP_003242387.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261282609|gb|ACX64580.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 1004

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 18/262 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F ++TD    E+ +    E   +AD+ K  F+  +S+ELR+P+  IIG  +LL T++
Sbjct: 741 VMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTE 796

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+  Q  Y+  +  SS  LL+++N+ILD + ++ G M LN+  I L  LL  V    
Sbjct: 797 ---LDEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLF 853

Query: 659 ATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD 715
           + K  E  + +   + S       + D  RL Q+   ++SNA+ F+ +GS T+ ++  R 
Sbjct: 854 SAKAKEKGLSLSFNINSANVPDVIIGDALRLRQVLVNLISNAIKFTHEGSITLNVEGLRR 913

Query: 716 NG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768
            G       F VK+ G  I  ++   +F  F S  H    R   G GLGL+I +  + L 
Sbjct: 914 TGTQEFTLAFQVKDTGIGIAPELQHQLFTSF-SQLHPSLNRKYGGTGLGLAISKKLVELM 972

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + + S +   ++    IP+
Sbjct: 973 GGVIGVESRENVGSSFYFTIPT 994


>gi|150396809|ref|YP_001327276.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium medicae WSM419]
 gi|150028324|gb|ABR60441.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium medicae WSM419]
          Length = 511

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A +  +EA R+A+E    K+ F+  +S+ELR+PL  I+GF++++ T  LG L N    
Sbjct: 242 EVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSNPTYK 301

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LLNL+N+ILDL+ ++AG  +L+   + L +++ +    +  +    NI
Sbjct: 302 EYTLDIHRSGEHLLNLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRARSKNI 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
            I    +  + S  AD + + Q+   +LSNA+ F+  G  V +K      G    S+++N
Sbjct: 362 TIGQQFEQAMPSVWADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLSIRDN 421

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  IPE+    V + F   S A +   +G GLGL IV++ +  H G   + S
Sbjct: 422 GPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRS 473


>gi|34498098|ref|NP_902313.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
            12472]
 gi|34103953|gb|AAQ60313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum
            ATCC 12472]
          Length = 1436

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 127/245 (51%), Gaps = 13/245 (5%)

Query: 542  FVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            FV +   VRAE    R L    E   +A   K+ FV ++S+E+R+P+  ++G  +LL  +
Sbjct: 780  FVCIAKDVRAEKEATRMLESAKEEAERASRAKSEFVANMSHEIRTPMNGVLGMLELLSNT 839

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   L+  Q  Y++ +  S   L++++NDILD + ++AG ++   +   L+++L  +   
Sbjct: 840  R---LDGVQRSYLDMLQLSCRSLMSILNDILDFSKLEAGKLEAARARYDLDEVLGALAAM 896

Query: 658  IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAAR 714
            ++       + + +  D  +  + V D  RL Q+   +  NA+ F+++G   +   +  R
Sbjct: 897  MSMHAARKRLELVIAVDPAVPAALVGDALRLQQVLVNLAGNAIKFTAEGEVAVSVGREKR 956

Query: 715  DNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            D  D+ +F+V++ G  +   + +++F+ F+       RR  G GLGL+I    + L GG 
Sbjct: 957  DGRDWLLFAVRDTGVGMEAPLLRTIFDPFIQADSSNTRRFGGTGLGLTISRRLVELMGGE 1016

Query: 772  VSISS 776
            + + S
Sbjct: 1017 IGVES 1021


>gi|78062940|ref|YP_372848.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77970825|gb|ABB12204.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 530

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 7/221 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A  +A+  K+ F+  +S+ELRSPL  I+GF  L+ T       S+Q+  ++ I  +   L
Sbjct: 143 AAERANRAKSDFLSSMSHELRSPLNAILGFAQLMATDSPPPTPSQQAS-IDQILRAGWHL 201

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+ND+LDLA +DAG + ++  ++ L+D+L E    I T+  +  IR+           
Sbjct: 202 LELINDVLDLAKIDAGQVAISPESVSLDDVLRECDSMIVTQAGQRGIRMTFPQGEAPCHV 261

Query: 681 VADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCK-- 736
            ADR R+ Q+   +LSNA+ ++   G+  +  +A   G    SV + G  + PE + +  
Sbjct: 262 RADRTRVKQVLVNLLSNAVKYNCPSGAVDVTCSAPVPGRVRVSVSDTGPGLSPEQVGRLF 321

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             FNR    A  G   G G+GL + +  + L GG + + S+
Sbjct: 322 QPFNRLGQEA--GPEEGTGIGLVVAKRLMELMGGGIGVDST 360


>gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 687

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 138/270 (51%), Gaps = 10/270 (3%)

Query: 529 SIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           SI PL       A T+   +++T+   AE       +A   A++ K+SF+ ++S+ELR+P
Sbjct: 158 SITPLKGGDGGLAGTLAAAMDITERKWAEEEAHRAKQAAEAANQAKSSFLANMSHELRTP 217

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIG++++L+              +  I ++   LL L+ND+LD++ ++AG M L   
Sbjct: 218 LNAIIGYSEMLQEEMEDLGQDDLIPDLAKIHSAGRHLLTLINDVLDISKIEAGKMDLFVE 277

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ +V  +I+  + +N   + V   G++G+  AD  ++ Q    +LSNA  F+S
Sbjct: 278 AFEIAPMVADVVATISPLIQKNGNTLVVDGAGEIGAMEADLTKVRQTLFNLLSNASKFTS 337

Query: 704 KGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            G+  +  + R  G++I F+V + G  +       +F  F        R+  G GLGL+I
Sbjct: 338 DGTITL--STRRQGEWIEFAVADTGIGMAPAELDRLFQAFSQADASTTRKFGGTGLGLAI 395

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F  + GG ++++S     TT   R+P+
Sbjct: 396 SRTFCRMMGGDIAVASEPGRGTTFTVRLPA 425


>gi|262382099|ref|ZP_06075237.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297276|gb|EEY85206.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 771

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E +L        ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +     +++++++
Sbjct: 526 ENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 584

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    M E   ++I+
Sbjct: 585 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 644

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729
           V  +  +    +D  RL Q+ +  ++NA+ F++KG   I  + + D    + SVK+ G  
Sbjct: 645 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 702

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S
Sbjct: 703 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 747


>gi|186686077|ref|YP_001869273.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186468529|gb|ACC84330.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 886

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 129/254 (50%), Gaps = 4/254 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           + V D   AE AL E  EA   A+  K +F+ ++S+ELR+PL++I+   + L+    G++
Sbjct: 630 LEVCDRKSAESALREAKEAAEVANRAKKTFLVNMSHELRTPLSSILEIAEALQNEVYGTV 689

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q Q++  + +S   LL L+N IL+L  +++  ++L  +   + +L +     +    
Sbjct: 690 TEEQRQFLNTLESSGKNLLELINQILELTDIESSKIELQLAATFIPELCDSSLSFVKNLA 749

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFI 720
            + NI++ V    +L     D +R+ Q+F  +LSNA+ F+  G  V ++   +  N    
Sbjct: 750 LQKNIQLSVQIPEELEPIQVDERRIRQVFINLLSNAIKFTHDGGKVWIEVQPNSTNEYIF 809

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           FSV + G  +  D    +F  F+   +   RR  G GLGL +V+  + LHGG V   S  
Sbjct: 810 FSVVDTGIGMLSDDLFRLFQPFIQVENASTRRSAGTGLGLVMVQKIVELHGGTVHAESQL 869

Query: 779 EGVTTINCRIPSKE 792
              +    ++P K+
Sbjct: 870 GKGSRFTVKLPWKK 883


>gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253]
          Length = 949

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  +IL  ARD 
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG-CIILHLARD- 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  IN+  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTIRIP 689


>gi|312887628|ref|ZP_07747221.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311299894|gb|EFQ76970.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 822

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 132/250 (52%), Gaps = 12/250 (4%)

Query: 536 AQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           A T +T +++T+S  +E    L EK +   + ++ K++F+ ++S+E+R+P+  +IG T L
Sbjct: 272 AFTDITSLHITNSQLSELNIELDEKRKIADEQNQAKSAFLANMSHEIRTPMNGVIGMTSL 331

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L ++   SL  +Q  YVE I  S   LL+L+NDILD + +++G M+L      L  ++ E
Sbjct: 332 LIST---SLTDEQQDYVETIRISGETLLSLINDILDFSKIESGKMELETQPFSLTSVIEE 388

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
               +  K  E  + +  + D  + S  + D  RL QI   ++SN + F+ KG  +I   
Sbjct: 389 TYDLLTVKADEKGLDLLYLIDADVPSEIIGDVTRLRQILVNLVSNGIKFTEKGEILISIE 448

Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
            L+ A       FSVK++G  IP+D    +F  F  V ++   +  G GLGL+I +  + 
Sbjct: 449 LLEKAGSIYTLQFSVKDSGIGIPQDKFHRLFQSFSQVDSSTTRKHGGTGLGLAISQRLVE 508

Query: 767 LHGGHVSISS 776
              G +   S
Sbjct: 509 AMQGSIRAES 518


>gi|309791480|ref|ZP_07685984.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226477|gb|EFO80201.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 690

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 6/240 (2%)

Query: 544 NVTDSVRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +VT+  + + AL   E +  L +  ++KN F+ ++S+ELR+PL  I+  T+ +     G 
Sbjct: 300 DVTERQQNQAALRTIEASTELERVAQLKNEFLANMSHELRTPLNTILSLTEAVSEGVYGL 359

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN +Q Q ++ ++ S   LL +VNDILD+  ++AG ++L    + +  +     + +   
Sbjct: 360 LNDRQQQVLDVVTESGQHLLGIVNDILDMIKIEAGKIELLIEPVEIESICAASMRMVRQI 419

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI 720
            +   I+I    D ++    AD +RL QI   +LSNA+ F+ +G  V L    D     +
Sbjct: 420 AYAKRIQIASQIDHQVDLIEADPRRLKQILVNLLSNAVKFTPEGGRVTLVVRGDAEAQLV 479

Query: 721 F-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           + SV++ G  I       +F  FV    R  RR  G GLGL++V     LH G V I S+
Sbjct: 480 YLSVEDTGIGIAHTDLPRLFRPFVQLDARLSRRHEGTGLGLALVAHLTELHNGGVRIQST 539


>gi|254182521|ref|ZP_04889115.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1655]
 gi|184213056|gb|EDU10099.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1655]
          Length = 818

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 212/512 (41%), Gaps = 81/512 (15%)

Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLP 366
           YE +L +LT  + + D++  L + N S   L   D   +   P  D    +  R A    
Sbjct: 176 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRA 235

Query: 367 EQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             L      E++    +S+  E H   W  P +GQ + +   ++P         G + + 
Sbjct: 236 SAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 286

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 287 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 342

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 343 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 398

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 399 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 440

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 441 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 497

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD +++  G ++L+   + L  ++N+V  ++      + I + V           D +RL
Sbjct: 498 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 557

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F     
Sbjct: 558 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 617

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 618 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 649


>gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 1314

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 123/231 (53%), Gaps = 12/231 (5%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+ ++S+E+R+PL  +IG  +LL T+   +L+ +Q++YV    +S+  LL L+ND
Sbjct: 598 QAKSAFLANMSHEIRTPLNGVIGMLELLGTT---TLDERQNRYVHIARSSAGTLLGLIND 654

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           +LD + ++AG ++L      L+ LL +V +  + + +E  + +   I  G   +   D +
Sbjct: 655 VLDFSKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLELSCRILPGVPTNVYGDPE 714

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFN 740
           R+ Q+   +++NA+ F+ +G  VIL+A +            SV + G  IP D    +F 
Sbjct: 715 RIRQVLINLVNNAIKFTKQGE-VILRAEQQVHSSGVSRMRISVIDTGIGIPADRSSQLFA 773

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F        R+  G GLGL+I    I L GG V + S +   +T  C +P
Sbjct: 774 PFTQVDASTTRKYGGTGLGLAICRQLIELMGGRVGVDSVEGNGSTFWCEVP 824


>gi|170741139|ref|YP_001769794.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168195413|gb|ACA17360.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 1000

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 145/303 (47%), Gaps = 10/303 (3%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTM---LTFVNVTDSVRA 551
           D   AI  + +  R     + E+ ++    +L  ++ PL   +     +   +V+ + R 
Sbjct: 692 DGRPAIRAALERARAGEPASTEVAAEGGEPILALTLAPLAQEEPRRFSVLLRDVSAARRT 751

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYV 610
           E  L     A   A   K+ F+  +S+E+R+PL  I+GFT+++   + G + N +   Y+
Sbjct: 752 EAELLRAKRAAEAASSQKSDFLATISHEIRTPLNAILGFTEVMMEEQFGPIGNERYRDYL 811

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   +++LV D+LDLA ++AG + L+++ +VLNDL+      +  +     + ++
Sbjct: 812 RDIRSSGEHVVSLVTDLLDLAKIEAGHLDLHFTGVVLNDLVGASVSLMQPQAARQRVVVR 871

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSS 729
                 L   + D++ L Q    +++NA+ F+  G  VI+  A  D G     V++ G  
Sbjct: 872 TSFANGLRPVLGDQRSLRQAALNLIANAIKFTDAGGQVIVSTAMTDRGGVALRVRDTGIG 931

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  D  ++    F  V+ A   + RG GLGL + ++ +  + G + +SS     T +   
Sbjct: 932 MTPDEVETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGTLRVSSRKHEGTLVEVL 991

Query: 788 IPS 790
            P 
Sbjct: 992 FPP 994


>gi|67920227|ref|ZP_00513747.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67857711|gb|EAM52950.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 758

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 129/254 (50%), Gaps = 14/254 (5%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603
           E+ + E  +ALR        A+  K+ F+ ++S+ELR+PLT IIG +  L       LN 
Sbjct: 362 EQRVIESTQALRDTLIASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQEGLNL 421

Query: 604 --SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              KQ +Y++ I  S   LL+++N+IL+ + + +G   L+     L  +   V Q ++ +
Sbjct: 422 PVDKQRKYLDTIQNSGKHLLDMINEILEYSNLQSGKYVLSVRYFSLTKVAKNVMQRVSDE 481

Query: 662 MHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 N+ + +  + +  SF AD +R+ QI   +L+NA+ F+SK   V L+   +    
Sbjct: 482 SEHRRINLELDLQIEPQKDSFSADPERVQQILYHLLNNALKFTSKNGKVTLRVWLEKNQL 541

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V++ G  I E+    +F  F  + N+ R    G GLGL++ +  + LHGG + + S 
Sbjct: 542 CLEVEDTGIGIEEEKIPLLFESFQQLENSRRRVYGGTGLGLALTKQLVELHGGTIEVESI 601

Query: 778 DEGVTTINCRIPSK 791
               +T   RIPS+
Sbjct: 602 INKGSTFTVRIPSQ 615


>gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ECD227]
          Length = 949

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  +IL  ARD 
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG-CIILHLARD- 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  IN+  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTIRIP 689


>gi|310829270|ref|YP_003961627.1| two-component system sensor histidine kinase [Eubacterium limosum
           KIST612]
 gi|308741004|gb|ADO38664.1| two-component system sensor histidine kinase [Eubacterium limosum
           KIST612]
          Length = 1091

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 156/311 (50%), Gaps = 27/311 (8%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPL-------PNAQTMLT--FVNVTDSVRAE 552
           A++  +++  + L   +++L D   EY  I L       P +  ML    + V D  RAE
Sbjct: 500 ALMRRYEEGERELYMEMQMLGDDG-EYHWISLYVIRVDNPYSDDMLVIGLMKVLDEQRAE 558

Query: 553 RALTEK--NEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +A  E+   +AL     A++ K+ F+  +S+++R+P+  IIG + + +  K G+ N  + 
Sbjct: 559 KARQERLLRDALTSAEAANKAKSEFLSRMSHDIRTPMNAIIGMSTIGQL-KAGAPNRVRD 617

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + E I +SS  LL L+NDILD++ +++G + L       ++ +NE+   I  +  E  I
Sbjct: 618 CF-EKIDSSSRYLLTLINDILDMSKIESGKIVLAKRKFDFSEFINEINTIIYPQTRERGI 676

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNG--DFIF 721
              V     +  F + D  RL QI   +LSNA+ F++ G  +   I +  R+NG      
Sbjct: 677 DFVVHHHEPMERFYIGDELRLNQIMMNLLSNAVKFTTPGGRITVDIRELKRENGLAYLGL 736

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778
           SV + G  + E+  K ++  F    + G  R   G GLGLSIV + I L GG ++++S  
Sbjct: 737 SVSDTGIGMSEEFMKKIYQPF-EQENPGTARNKIGTGLGLSIVYNIIQLMGGTIAVTSEK 795

Query: 779 EGVTTINCRIP 789
              TT    +P
Sbjct: 796 NCGTTFELSVP 806


>gi|241203167|ref|YP_002974263.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
 gi|240857057|gb|ACS54724.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
          Length = 1276

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + 
Sbjct: 1019 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1078

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Y+EY   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++E    +  
Sbjct: 1079 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1136

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  + + NG  
Sbjct: 1137 QANGQRVIIRTALSQAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1196

Query: 720  IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  V++ G  +     D     F +  S   R +  G GLGL + ++ ++ +    +I+S
Sbjct: 1197 VLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFTINS 1256

Query: 777  SDEGVTTINCRIPSK 791
            +    T +    PS+
Sbjct: 1257 APNEGTLVEITFPSQ 1271


>gi|52143444|ref|YP_083385.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51976913|gb|AAU18463.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 453

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++G  I
Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDDGIGI 395

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452


>gi|17229375|ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130973|dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1194

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 128/247 (51%), Gaps = 7/247 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + + EK E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L++KQ +Y
Sbjct: 509 KARKFIEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLADNSSGNLSNKQVEY 568

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I ++ T LL L+NDILDLA +++G + +    I   DL + +K++      +  +  
Sbjct: 569 SQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIKRTFQQVAQDKGLSF 628

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVK 724
            +  D +L S  ++D +RL QI   +L+NA  F+ +G     + L     N   I F++ 
Sbjct: 629 SIERDERLPSTILSDPKRLQQILKNLLANAFKFTEQGGVNLRIGLDQINTNHPMITFAIS 688

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP++  + +F  F        R+  G GLGLSI      + GG + + S     +
Sbjct: 689 DTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELAQMLGGRLGLVSQPGQGS 748

Query: 783 TINCRIP 789
           T    +P
Sbjct: 749 TFTLYLP 755


>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
 gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
          Length = 1325

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E+ L E  +A     + K  F+ ++S+E+R+P+  I+G   L   ++L  
Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   I+ K
Sbjct: 638 -DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI    R   +  
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQLNEQQ 756

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +F+VK+ G  I ++    +FN F    N+   Q  G GLGLSI +  + L GG +S+
Sbjct: 757 VMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISV 816

Query: 775 SSSD 778
            S +
Sbjct: 817 HSEE 820


>gi|330971298|gb|EGH71364.1| response regulator receiver [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 1172

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|301310672|ref|ZP_07216611.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300832246|gb|EFK62877.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 736

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E +L        ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +     +++++++
Sbjct: 491 ENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 549

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    M E   ++I+
Sbjct: 550 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 609

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729
           V  +  +    +D  RL Q+ +  ++NA+ F++KG   I  + + D    + SVK+ G  
Sbjct: 610 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 667

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S
Sbjct: 668 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 712


>gi|298375314|ref|ZP_06985271.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
 gi|298267814|gb|EFI09470.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
          Length = 771

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E +L        ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +     +++++++
Sbjct: 526 ENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 584

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    M E   ++I+
Sbjct: 585 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 644

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729
           V  +  +    +D  RL Q+ +  ++NA+ F++KG   I  + + D    + SVK+ G  
Sbjct: 645 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 702

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S
Sbjct: 703 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 747


>gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
 gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
          Length = 745

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD   +E AL    +    A+  K+ F+   S+E+R+PL  I+G + LL  + L   N
Sbjct: 213 DVTDRTESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSTLLLDTPL---N 269

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y + +  S   L++LV ++LD + ++AG + L +    L  ++ E+ + +A +  
Sbjct: 270 PEQAAYAKAVKTSGEALMSLVEELLDFSKIEAGKINLEHRPFHLAGMIEEITELLAPRAQ 329

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721
              I I    D +L   VA D  RL Q+   + SNA+ F+S+G   +I++      +  F
Sbjct: 330 ARQIEIACYIDERLPLEVAGDAARLRQVLLNLASNAVKFTSRGGVALIVEPGIWPNEISF 389

Query: 722 SVKNNGSSIPEDMCKSVFNRF-VSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  I  D  + +F  F  ++ H   Q  G GLGL+I E  +   GG +++ S   
Sbjct: 390 MVRDTGIGIAPDAQQRIFREFEQADEHIARQYGGSGLGLAISERIVRRMGGRIALESVPG 449

Query: 780 GVTTINCRIP 789
             TT    IP
Sbjct: 450 EGTTFEVSIP 459


>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
 gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
          Length = 1325

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E+ L E  +A     + K  F+ ++S+E+R+P+  I+G   L   ++L  
Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   I+ K
Sbjct: 638 -DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI    R   +  
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQLNEQQ 756

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +F+VK+ G  I ++    +FN F    N+   Q  G GLGLSI +  + L GG +S+
Sbjct: 757 VMLLFAVKDTGIGIAQEKLSDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISV 816

Query: 775 SSSD 778
            S +
Sbjct: 817 HSEE 820


>gi|261253198|ref|ZP_05945771.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891]
 gi|260936589|gb|EEX92578.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891]
          Length = 565

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           L+   EA  +A+E + S   FV  +++ELR+PL  ++G  +LL  ++L   + +Q   + 
Sbjct: 188 LSRHQEARSRAEESERSTKEFVAMINHELRTPLNGLLGSAELLDGTEL---DEEQRTLLT 244

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++ S  +L +++NDILD + ++AG+M+L  ST  +++L N +      +  E  I   +
Sbjct: 245 NLTHSGDLLRHIINDILDFSKMNAGMMELIPSTFQMSELRNMIHGIFEPRAREKGIEFTI 304

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              G+L  SF+ D +R+ QI   ++ NA+ F+S+GS V + A    G    SV + G  I
Sbjct: 305 TESGELPTSFIGDFERIGQILVNLVGNAVKFTSEGS-VTVTARWSAGSLTMSVSDTGVGI 363

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            E+  K +++ FV      +R   G GLGL+I ++ + L  G +++ S
Sbjct: 364 AEEAKKELYSPFVQADRTAKRHFEGTGLGLAICKNLVELMSGTIALES 411


>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
 gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
          Length = 1325

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E+ L E  +A     + K  F+ ++S+E+R+P+  I+G   L   ++L  
Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   I+ K
Sbjct: 638 -DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI    R   +  
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQINEQQ 756

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +F+VK+ G  I ++    +FN F    N+   Q  G GLGLSI +  + L GG +S+
Sbjct: 757 VMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISV 816

Query: 775 SSSD 778
            S +
Sbjct: 817 HSEE 820


>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
 gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
          Length = 1325

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E+ L E  +A     + K  F+ ++S+E+R+P+  I+G   L   ++L  
Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   I+ K
Sbjct: 638 -DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI    R   +  
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQLNEQQ 756

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +F+VK+ G  I ++    +FN F    N+   Q  G GLGLSI +  + L GG +S+
Sbjct: 757 VMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISV 816

Query: 775 SSSD 778
            S +
Sbjct: 817 HSEE 820


>gi|239981307|ref|ZP_04703831.1| putative two-component system sensor kinase [Streptomyces albus
           J1074]
          Length = 574

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 6/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K+  LR A   K  F  +VS+ELR+P+  +I    LL  +    L  +Q Q V  I+
Sbjct: 175 LEDKSRRLRLASAAKTRFWANVSHELRTPVNAVIALAQLLLDAGAEPLTDEQHQQVSLIA 234

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL LV ++LD A  ++G ++       L  +L++++ ++A+   E ++ +++   
Sbjct: 235 GSGNTLLALVEELLDTAKAESGRLEPQLVEADLRTVLHQLRGTLASTTAE-DVTLEIADT 293

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIP 731
              G FV D   L +I   +LSN++ F+++GS  +  A     D    +F+V + G  IP
Sbjct: 294 AFPGPFVTDEVMLTRILRNVLSNSLKFTTEGSVRLTVADERRADGPWAVFTVTDTGVGIP 353

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  + VF  F  V   H+    G GLGL        L GG ++++S     T +   +P
Sbjct: 354 EDEIEQVFEEFYQVRGVHQRHVSGTGLGLPYARKLTELLGGRLTLTSRLGHGTRVVVELP 413

Query: 790 S 790
           +
Sbjct: 414 A 414


>gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 959

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 137/261 (52%), Gaps = 17/261 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++TDSV+A +AL +  EA   A   K+ F+ ++S+E+R+PL  ++G   LL+T++   
Sbjct: 557 FRDITDSVKAAQALLDAKEAAESATRAKSEFLANMSHEVRTPLNGVLGMLQLLQTTEQ-- 614

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSI 658
              +Q +Y+     S+  L  L+ DILD++ ++AG   I++  + T  L + + E+ +  
Sbjct: 615 -TDEQKEYILGAIKSTKRLTRLLADILDISKIEAGKLQIIEAEFFTACLQESIMEIFRPT 673

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR 714
           A    E ++      D ++    + D  R+ QI   ++ NA+ F+  GS     ++  A+
Sbjct: 674 A---REKSLAFDFHVDAQMPPMLIGDETRVRQILFNLVGNALKFTESGSVQVDAMVLPAK 730

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
           ++G    +F+V + G  I ++  K +F  FV       R  +G GLGL+IV   + + GG
Sbjct: 731 NSGAVRVLFAVSDTGIGISDEQLKDIFEPFVQGERSYTRCYQGAGLGLAIVRKLVRILGG 790

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + I ++    TT+   +P K
Sbjct: 791 EMVIDNTAGNGTTVYVSLPFK 811


>gi|239787346|emb|CAX83823.1| Sensor protein [uncultured bacterium]
          Length = 478

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 132/250 (52%), Gaps = 21/250 (8%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
           +DQ  + +++  +L+  IAI+++N  L+F N+++++L++ D +FLA +P+  ++L+ L S
Sbjct: 246 DDQRKYFHDVCQHLSTPIAIWNENLSLEFSNKAYIDLFKFDPSFLAKHPNLSDVLDDLHS 305

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQTLHVIVTSNPRG-GTIWMFENL 419
             KLPE  N+  +K       K+  T   +  HLPNG+ LH   T  P   G I+++E++
Sbjct: 306 RQKLPEPSNFTLFKNKEIEAVKTLTTSVSEILHLPNGKILH--HTRFPLSTGIIFLYEDM 363

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T    L+ +  TL  VQ  TIDHL EGV VFG D  ++L NPA + ++     R+    H
Sbjct: 364 TDTYSLKQQNKTLTDVQKHTIDHLFEGVLVFGSDHCVQLFNPAVQEIFGL---RILERYH 420

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           + +     ++   +          + S    R++  G +     S + ++  PLP+   M
Sbjct: 421 LNDFLRQTNQLLQD----------LPSVFSRRQACDGVIA----SDIRWAYTPLPDGSHM 466

Query: 540 LTFVNVTDSV 549
           L FV +T + 
Sbjct: 467 LRFVTITHAA 476


>gi|159900917|ref|YP_001547164.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893956|gb|ABX07036.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 497

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 4/213 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A  +A+ +K  F+ ++S+ELR+PL  II FT  L   + G L ++Q +  E +  +S  L
Sbjct: 246 AADEANTLKTRFLANMSHELRTPLNAIINFTQFLGKPRYGDLTARQIELQERVLVNSEHL 305

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+NDILDL+ ++AG M+L+   + L  + N V  +         + ++   + ++   
Sbjct: 306 LGLINDILDLSKIEAGRMELHLELLDLQPIFNGVMATAVGLTKSKGLNLESDVEEEIPPV 365

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D+ R+ QI   +LSNA  F+  G  + L+A   +G    SV + G+ IP      VF 
Sbjct: 366 RGDKVRVRQILLNLLSNAAKFTDSGG-ITLRAFESDGMVQISVIDTGAGIPAHELPLVFE 424

Query: 741 RF--VSNAHRGQR-RGVGLGLSIVESFINLHGG 770
            F  V  A   QR +G GLGL I    + L GG
Sbjct: 425 EFHQVEQAASAQRQQGTGLGLPISRHLVELQGG 457


>gi|159901363|ref|YP_001547610.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894402|gb|ABX07482.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 884

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 129/244 (52%), Gaps = 18/244 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D +K  F+  VS+ELR+P+T+I G+T LL    LG +NS Q +++  I+ +S  ++ +
Sbjct: 637 ESDRLKTEFIGTVSHELRTPMTSIKGYTQLLAMGSLGEVNSTQKEFLNTIAHNSERMIAI 696

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+LD+  ++ G ++L  + +++ D+++ V  +   ++ +      +     L +  +D
Sbjct: 697 INDLLDITKIETGSVELQMARLMVADVMSSVVGNARAEITQRQQEFSLSLAPNLPTIWSD 756

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----------------FSVKNNG 727
            +R+ Q+ S +LSNA+ ++  G  + +KA   N + I                 +V+++G
Sbjct: 757 MERIRQVASNVLSNAIKYTPNGGKISVKAFEINFNDIPNKQREGLQVGRRYIALAVQDSG 816

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I     + VF+RF    N  + +  G GLGLS+V   I L GG + + S+    TT  
Sbjct: 817 VGIDPSEHEKVFDRFYRTENPLKIEAGGTGLGLSLVRPLIQLMGGRIWLESAVNQGTTFT 876

Query: 786 CRIP 789
             +P
Sbjct: 877 FIMP 880


>gi|217424292|ref|ZP_03455791.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 576]
 gi|217392757|gb|EEC32780.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 576]
          Length = 818

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 212/512 (41%), Gaps = 81/512 (15%)

Query: 309 YE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLP 366
           YE +L +LT  + + D++  L + N S   L   D   +   P  D    +  R A    
Sbjct: 176 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRA 235

Query: 367 EQLNWKTWKENIFSVYKSS--ETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMF 416
             L      E++    +S+  E H   W  P +GQ + +   ++P         G + + 
Sbjct: 236 SAL------EHVLRSGRSASVEGH---WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIV 286

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
            +++++ +       L ++    ++   + +   G + RI   NPA R ++  +E     
Sbjct: 287 RDISIERERSAASQMLRRL----VEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARG 342

Query: 472 -------------NRLSPGT------HIRNIAATCSRYYNESDGWDLFAAIITS--FDDE 510
                        N   P +       I N+   C R     DG  + A +  S  FD+ 
Sbjct: 343 CDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVR----QDGGRMRATMSASPVFDER 398

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
                       D+ +  S+      +       V  S+R  R      +A R+AD    
Sbjct: 399 ------------DACIALSLTLRDTGEQRRRERRVHRSLRGAR------DARRQADTSNR 440

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  S+  L  +V DI
Sbjct: 441 LKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDI 497

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD +++  G ++L+   + L  ++N+V  ++      + I + V           D +RL
Sbjct: 498 LDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERL 557

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +    VF  F     
Sbjct: 558 RQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEG 617

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 618 APASPRRGLGLGLSIVRHIAELHGGKVEAASA 649


>gi|150008173|ref|YP_001302916.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|149936597|gb|ABR43294.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
          Length = 522

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 157/327 (48%), Gaps = 40/327 (12%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536
           F  I+   D ER  +QG  ++++  + EYSI                  P         A
Sbjct: 194 FCEIVHPEDRERVLVQGFEKIVTGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 253

Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586
           + +   +++TD +         ER    K   L KA E   +K+ F+ ++S+E+R+PL  
Sbjct: 254 KILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAKEANRLKSMFLANMSHEIRTPLNA 313

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF ++L          ++  YV+ I  +S +LL L+ DILD + ++AG   +      
Sbjct: 314 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKKNFD 372

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++  E     A K+ + N+R       +  +  +D +R++Q+ S  L+NA+ F+S+G 
Sbjct: 373 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVIQVISNFLTNAIKFTSEGE 431

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFI 765
            + L     N +   SV + G  I +D C+++F+RFV  NA    ++G GLGL+I ++ I
Sbjct: 432 -IKLAYKVSNDEIRVSVSDTGMGISDDDCRTIFDRFVKLNAC---KQGTGLGLAICKNII 487

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
              GG + + S+    +T    +P KE
Sbjct: 488 EKLGGRIGVESTLGVGSTFWFTLPLKE 514


>gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 704

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D  + E+ L E   A   A   K+ F+ ++S+E+R+P+  +IG   LL T++   L+
Sbjct: 309 DISDRKQHEKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVIGMAHLLGTTE---LS 365

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q QY+E I  S+  L+ L+ DILDL+ ++AG M L      L   + E+  S   +++
Sbjct: 366 PEQEQYLENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRCIQELLGSQQFQIN 425

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF 719
           +  I I   I++        D+ R  QI   +L NA+ F+  G   I   L  + +N   
Sbjct: 426 QKKISIHTEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGGVTITAQLVTSEENRVL 485

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I  +V + G  +P D+ + +F  F    +   RR  G GLGL+I      L GG +   S
Sbjct: 486 IHLAVSDTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRRLAELMGGRIWAES 545

Query: 777 SDEGVTTINCRIP 789
             EG +T +  +P
Sbjct: 546 GAEGGSTFHVELP 558


>gi|150007327|ref|YP_001302070.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935751|gb|ABR42448.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 771

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E +L        ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +     +++++++
Sbjct: 526 ENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPLEPEEKAEFID 584

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    M E   ++I+
Sbjct: 585 LITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIR 644

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSS 729
           V  +  +    +D  RL Q+ +  ++NA+ F++KG   I  + + D    + SVK+ G  
Sbjct: 645 VPHEPLI--IRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKG 702

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S
Sbjct: 703 IPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLES 747


>gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1101

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E+    ++A  +K+ F+  +S+E+R+P+  I+G T  LK S L   + +Q + ++
Sbjct: 581 EEQLIEERHKYQEASRVKSDFLATISHEIRTPMNTILGMTGELKESHL---SGEQLKLLQ 637

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I A+++ LL ++ND+LD +  +AG ++L  + ++L  +++E +Q +A ++ +  IR   
Sbjct: 638 SIQAAASNLLQIINDVLDFSRFEAGSIELFIAPLLLRQVVSEAEQIVAFQIRKQGIRFLT 697

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA-ARDNGDFIFSV 723
             D  +  F+  D QRL Q+   +L NA  F+ +G+  +L      KA A D  +  F V
Sbjct: 698 YMDSTVPPFIFGDAQRLRQVLVNLLVNASKFTEQGTIALLVHLQPGKAEASDQQELCFRV 757

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + G  I E     +F+ F     +   Q  G GLGLSI +  + + GG +   S
Sbjct: 758 VDTGIGISEAHRDKLFHAFSQADGSITRQYGGTGLGLSISKHLVGMMGGTIGFES 812


>gi|325103345|ref|YP_004272999.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324972193|gb|ADY51177.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1304

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+++SV+    L +       A + K+ F+ ++S+E+R+PL  +IGF+DLL  +    LN
Sbjct: 654 NISESVKVNEELKKAKTFADLASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKT---PLN 710

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q QY+ YI+ S   LL+++NDILD + ++AG ++L      + D+ N+V   +  +  
Sbjct: 711 ETQKQYLNYINESGNSLLSIINDILDFSKIEAGKLELFIDKFNIYDIANQVINIVLYQAQ 770

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
             ++ + + I  G   S   D  R+ Q+   +L NA+ F+  G   +    L +  D   
Sbjct: 771 RKDVELLLNIEQGLPSSIWVDESRIKQVLINLLGNAVKFTEHGEIELKIEKLSSYNDKIT 830

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV++ G  IP+D  + +F  F        +R  G GLGL+I  + +N     + + S
Sbjct: 831 LRFSVRDTGIGIPKDKQQRIFEAFTQEDSSVSKRYGGTGLGLTISNNLLNYMKSKLQLKS 890


>gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1420

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 4/230 (1%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +  E   +A+  K+ F+  +S+ELR+PL+ ++    LL+   +   ++K  +  E I  S
Sbjct: 1016 QAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRRGTMD--DAKIKRASEAIERS 1073

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            + + + L++D+LD++ +  G +++ + T+ L  ++    +S++ +    +I  +   D  
Sbjct: 1074 TKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSILFETTLDES 1133

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            LG    D  RL QI   +L+NA+ FS++G  V +   R  G     V + G+ I  +  +
Sbjct: 1134 LGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERMEGSARLQVSDRGAGIEAEALQ 1193

Query: 737  SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             +F+RF+       R   G+GLGL+IV   + LHGG V   S  +G   I
Sbjct: 1194 RIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAI 1243


>gi|253567906|ref|ZP_04845317.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251841979|gb|EES70059.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 641

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 6/235 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     G+   +Q
Sbjct: 397 DLLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GNTEEEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L  +V  S++      N
Sbjct: 455 QTYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCRQVVASVSVSRQSGN 514

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKN 725
            +   +SD +      D QR+ Q+   ++SNA  F+ KG   +  +  +  +  +FSV +
Sbjct: 515 -QFLFVSDYESFRMTTDIQRMQQVIINLMSNADKFTRKGQITLEFSVNEETEMAVFSVTD 573

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            G  IP++  K VF RF       Q  G GLGLSI +  ++   G + I S   G
Sbjct: 574 TGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGDIWIDSEYTG 626


>gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 1032

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 11/235 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++ ERA +E  E    A+ +K+ F+ ++S+E+R+P+  +IG T LL+ ++L   N  Q +
Sbjct: 381 LQTERA-SEMAEKAILAERLKSEFLANMSHEIRTPMNGVIGMTHLLQDTEL---NETQQE 436

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YVE +  S+  LL L+NDILDL+ ++AG M +    + + DL  +V    A+      + 
Sbjct: 437 YVETMLNSTESLLVLINDILDLSKIEAGKMTIEQMDVDVMDLQAQVSSLFASNAQAKGVE 496

Query: 669 -IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSV 723
            + V       +FV D  RL Q+ + +LSNA+ F+ KG   +   ++  R++G  I F V
Sbjct: 497 LVSVYPLDCYKTFVTDPYRLKQVLANLLSNAIKFTEKGDVTLRIEIEEPREDGARIRFEV 556

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + G  I  ++  ++F  F        RR  G GLGL+I +  +   GG + + S
Sbjct: 557 VDTGIGIAPEVVDTLFKSFSQADASTTRRFGGTGLGLAISQRLVQYLGGRLQVES 611


>gi|295087713|emb|CBK69236.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase. [Bacteroides
           xylanisolvens XB1A]
          Length = 754

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 138/272 (50%), Gaps = 12/272 (4%)

Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Y+   LP  +  T    +N+ D    E  L E    L +  E+K SF+ ++S+E+R+P
Sbjct: 488 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTP 546

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +I+GF ++L     G  ++++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++ 
Sbjct: 547 LNSIVGFANILALED-GLSSAEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 605

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + +L++++  +    +  +   +K + D  L     DR+RL+Q+ +  L+NA  F+ 
Sbjct: 606 RCKVRELIDDIYMTHQVLIAPHLEFLKEVDDTPL-EINVDRERLIQVLTNFLNNAGKFTE 664

Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            G   +      D G+    V++ G  IP +  + +F+RF       Q  G GLGLSI +
Sbjct: 665 TGYIKLGYSYLPDEGNVQIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQ 722

Query: 763 SFINLHGGHVSISS----SDEGVTTINCRIPS 790
             I   GG + + S           + CR+ S
Sbjct: 723 VIIEKLGGKIELKSEVGKGSRFTVILPCRVVS 754


>gi|51245645|ref|YP_065529.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50876682|emb|CAG36522.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1358

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 14/253 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A++ +  K + L  + + K+ F+ ++S+ELR+PL +I+  + LL T+K G+L+ KQ +  
Sbjct: 656 AQKIVEGKVDELETSGKYKSEFLANMSHELRTPLNSILILSQLLSTNKAGNLSDKQVESA 715

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LLNL+NDILDL+ V+AG ++L    I    +  ++ +      H+  I   
Sbjct: 716 GAIHSSGAELLNLINDILDLSKVEAGKVELIIEEIPFKRIEADLHRLYKDLAHDKGISFD 775

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGD-- 718
           +  + +L  +   D QRL Q+   +++N+  F+ +GS  +         L   R  G   
Sbjct: 776 ITLNPQLPQTLKTDSQRLQQVLRNLITNSFKFTLQGSVSLEIEPAPAEQLLNTRLEGQKA 835

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F+VK++G  IP+   +++F  F  V  +   +  G GLGLSI +    L GG +++SS
Sbjct: 836 IVFAVKDDGIGIPQAQQQNIFEAFQQVDGSTSRKYGGTGLGLSISKELTKLLGGFITLSS 895

Query: 777 SDEGVTTINCRIP 789
            ++  +T    +P
Sbjct: 896 VEDEGSTFRITLP 908


>gi|332703674|ref|ZP_08423762.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 1087

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 12/238 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAE    +  E    A+  K  F+ ++S+ELR+PL  ++G  +L   + +   + K   +
Sbjct: 696 RAEEGHKQAREEAEAANRAKTEFLANMSHELRTPLNGVLGMIEL---AGMSCADPKTHDF 752

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +     S  +LL+++ND+LDLA ++AG ++L      L + L+     +        +R 
Sbjct: 753 LRMAKDSGRMLLDIINDLLDLAKIEAGKVELEKKVFNLREALDNTFYPVCMVAERKGLRC 812

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDNGDFIFS 722
            ++ D  +    V D  R  Q+ + ++ NA+ F+ KG        +    A D+    F 
Sbjct: 813 SLVVDQSVPEHLVGDLGRFRQVVTNLVGNAVKFTEKGEVNLSVMRIPHPFATDSVQIRFR 872

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           VK+ G  IP+DM  ++F+ F  V  ++  +  G GLGL+I  + +NL GG +S+ S +
Sbjct: 873 VKDTGIGIPQDMHNAIFDDFTQVGRSYSSKYGGTGLGLAISRNLVNLMGGDISVVSEE 930


>gi|332521563|ref|ZP_08398017.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042962|gb|EGI79161.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
          Length = 1514

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 134/241 (55%), Gaps = 7/241 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L ++ E  + AD +K++F+  +S+ELR+P+ +IIGFT +L     G LN +Q + +  + 
Sbjct: 1274 LEKEKEKAQSADLMKSAFLATMSHELRTPMNSIIGFTGILLKQLAGPLNDEQKKQLTMVK 1333

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +S   LL+L+NDILD++ ++AG + + YS     ++L +    +  +  +  ++IK  IS
Sbjct: 1334 SSGESLLSLINDILDVSKIEAGKLNVAYSAFKYLEILEKTIAFLTPQAEKKGLKIKTEIS 1393

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-VKNNGSSIPE 732
            +  +    +D +R+ QI   ++SNA+ FS+KG  +I    +  G+F+ + + + G  I  
Sbjct: 1394 NFDI-VIESDERRVEQILLNLISNAIKFSNKG--IISIKVKLEGNFVITKIIDQGIGIEA 1450

Query: 733  DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               K++F  FV       RR  G GLGLSI +S +   GG + + S     +T   ++P 
Sbjct: 1451 KHIKTLFEPFVQLEAGLSRRHEGTGLGLSISKSLVEKLGGEILVKSQLGEGSTFTFKLPL 1510

Query: 791  K 791
            K
Sbjct: 1511 K 1511


>gi|298387628|ref|ZP_06997179.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259484|gb|EFI02357.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 641

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 6/235 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     G+   +Q
Sbjct: 397 DLLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GNTEEEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L  +V  S++      N
Sbjct: 455 QTYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCRQVVASVSVSRQSGN 514

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKN 725
            +   +SD +      D QR+ Q+   ++SNA  F+ KG   +  +  +  +  +FSV +
Sbjct: 515 -QFLFVSDYESFRMTTDIQRMQQVIINLMSNADKFTRKGQITLEFSVNEETEMAVFSVTD 573

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            G  IP++  K VF RF       Q  G GLGLSI +  ++   G + I S   G
Sbjct: 574 TGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGDIWIDSEYTG 626


>gi|159905929|ref|YP_001549591.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887422|gb|ABX02359.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 613

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L++ D++K+  +  VS+ELR+PLT+I G+ DLLK    G LN KQ ++V  IS +S  
Sbjct: 382 DELKEVDDLKSELISIVSHELRTPLTSIRGYIDLLKDETAGKLNEKQKEFVSVISENSER 441

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLG 678
           L  + +++ DL TVD     LN     LN + N V++ +++  H  + R I ++ D    
Sbjct: 442 LKRITDNMSDLVTVDN--EHLNTKLDKLN-IKNAVEEIVSSLQHFADSRNIILLEDVDDL 498

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D+ ++ Q+ + ++ NA+ FS   + V +    DNG+    + + G  IP++    V
Sbjct: 499 YIKGDKSKIHQVLANLIENAVKFSKTQTKVTVTGYEDNGNIHLEITDQGPGIPKEYLDKV 558

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF       +R+  G GLGL++ +  +  HGG + + S     T ++   P
Sbjct: 559 FDRFYQIDSSSKRKIGGSGLGLAVCKKIVESHGGSIWVESRIGKGTNVHVLFP 611


>gi|218264472|ref|ZP_03478305.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221965|gb|EEC94615.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii
           DSM 18315]
          Length = 620

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 132/239 (55%), Gaps = 7/239 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+ E   +A+++K++F+ ++S+E+R+PL  I+GFT+LL+  K    + ++  +   I+
Sbjct: 385 LIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEK-DLTDEEKDLFRNTIN 443

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S +LL L+NDIL+L+ +++G M   +    LN+LL E+ Q+    M  N   +K   +
Sbjct: 444 KNSNLLLKLINDILELSRIESGRMSFTFDDCALNELLEEIYQTHHLLMPSNIRFLKEFQE 503

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPE 732
            +L   V DR R  Q+ +  ++NA+ F++KG  ++  +    +    IF V++ G  + E
Sbjct: 504 SELIIHV-DRFRFTQVITNFINNAVKFTTKGHILLGYVYKKEEKEAHIF-VEDTGKGMSE 561

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  K VF RF       Q  G GLGLSI ++      G ++++S +   +     IP +
Sbjct: 562 EAQKKVFERFFKADEFAQ--GTGLGLSICQTIAERLDGRITLASQEGKGSCFTLIIPCR 618


>gi|108759236|ref|YP_635471.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108463116|gb|ABF88301.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 842

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 118/220 (53%), Gaps = 5/220 (2%)

Query: 563 RKA-DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           RKA + +KN F+  VS+ELR+PLT+I G   LL+   +G +  +    V     ++  L+
Sbjct: 346 RKAVERMKNEFISTVSHELRTPLTSIRGSLGLLEGGIVGDIPPQALDMVRIARTNTERLI 405

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILDL  ++AG ++L  ST    DL+     S+        + +     G      
Sbjct: 406 RLINDILDLEKMEAGKLELKVSTPECADLVESAFASVRGMADGAGVSLHAEVTGT-PQVK 464

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           ADR RL+Q+ + ++SNA+ FS +G+ V ++    ++G   FSV + G  I ++    +F 
Sbjct: 465 ADRDRLVQVLTNLVSNAVKFSPQGAGVTVRVGEEEDGRVRFSVVDQGPGISQEQRARLFG 524

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           RF  + ++    + G GLGL+I ++ +  HG  +++ S +
Sbjct: 525 RFQQLDSSDTRSKGGTGLGLAISQAIVEQHGSRITVESEE 564


>gi|118579770|ref|YP_901020.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502480|gb|ABK98962.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 944

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 139/291 (47%), Gaps = 24/291 (8%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           SDG      I    D E + ++G  EL+SD      I  L   Q  L  +N         
Sbjct: 293 SDGQHCHTMIHYIPDMEGEQVRGFYELVSD------ITELKQTQFRLEELNT-------- 338

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL ++ E    A+  K+ F+ ++S+E+R+P+  ++G   LL+ ++L   + +Q  Y+E +
Sbjct: 339 ALQQRTEEAEAANAAKSRFLANMSHEIRTPMNAVLGLLHLLQRTEL---SPRQHDYIEKV 395

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S  LL ++NDILD + ++A  M+L        +LLN +   ++  +    + +    
Sbjct: 396 QMASRSLLGILNDILDFSKIEADKMELETVPFFPQELLNNLAVFLSPSLQNKKVELLFDV 455

Query: 674 DGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
           D  L  + + D  RL Q+   +  NA+ F+ +G  V    ++    D     FSVK+ G 
Sbjct: 456 DADLPPTLLGDALRLQQVLLNLTGNAVKFTEQGRIVVTIQVVSLTPDQARVRFSVKDTGI 515

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            IP D  +SVF  FV       RR  G GLGL+I    + L GG + + S+
Sbjct: 516 GIPADKLESVFTGFVQAESSTTRRFGGSGLGLTISRRLVRLMGGELEVEST 566


>gi|295705734|ref|YP_003598809.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294803393|gb|ADF40459.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 995

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 175/370 (47%), Gaps = 20/370 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENR 473
           + E   +Q + E K       Q   ID L  G+AV   + +I+L N  F  L++ + E  
Sbjct: 119 IMEEEILQKEQEQKLMNSYAFQRSLIDWLDSGIAVTDCNKKIRLLNRKFYELFQLKGEID 178

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G H  ++     +  N+         I     ++R      +++ +   L Y+  PL
Sbjct: 179 CHIGMHASDLHYLFDKEINK---------IKLENTEKRTKTTKEIKINTGMTLRYNCFPL 229

Query: 534 PNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                 +     F ++T+  + ER + +  E   K +  K+SF+  +S+ELR+PL  I+G
Sbjct: 230 NEKNNFVGYLWEFEDITEQKKMERVIVQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILG 289

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  LL+  +  SLN +Q  +V+ I +  + LL+L+NDILD++ ++ G +K++   + L  
Sbjct: 290 FAQLLEMDE--SLNEQQHDFVQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLT 347

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK-GST 707
           ++ E    +     + NI I    D      V AD  RL QI   +L NA+ ++ + G  
Sbjct: 348 VIKECINIVQPLAKKKNISIYSQLDQWEDMMVLADPIRLKQILLNLLDNAIKYNQENGKV 407

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           ++    ++N  +I  V + G     +    VF  F       +  G G+GLS+V+  ++L
Sbjct: 408 IVFCRLQENKQYIHIV-DTGVGFSVEEYTKVFVPFY-RIENTKEEGTGIGLSLVKQLVHL 465

Query: 768 HGGHVSISSS 777
            GG ++++S+
Sbjct: 466 MGGDINVTSN 475


>gi|253570165|ref|ZP_04847574.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840546|gb|EES68628.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 931

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 21/240 (8%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E+ L    +     D +K++F+ ++S+E+R+PL  I+GF+DLL  T  +   
Sbjct: 685 DITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDTENI--- 741

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K+
Sbjct: 742 -EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKV 800

Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            EN   ++++ D  L     ++DR RL Q+ S  ++NA+ F+S+GS  +    +  G+ +
Sbjct: 801 KEN---VELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGSIRV--GYKQKGEEL 855

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F V++ G  I  +    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 856 EFYVQDTGVGIDAESQAHIFERFVKLNSFVH-----GTGLGLSICQSIVEQMGGKIGVES 910


>gi|78486252|ref|YP_392177.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira
           crunogena XCL-2]
 gi|78364538|gb|ABB42503.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira
           crunogena XCL-2]
          Length = 1118

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 9/245 (3%)

Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           ML  V ++T    AE  L +  E   KAD+ K+ F+  +S+ELR+PL +IIGF+DLL   
Sbjct: 726 MLGVVQDITRRKEAEEHLIQALERAEKADKAKSEFLSSMSHELRTPLNSIIGFSDLL--- 782

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +  L  K+   V++IS S   LL L+N +L+L+ ++ G ++L  + +VL D ++    +
Sbjct: 783 SMADLPEKEQHQVDHISESGHHLLALINQLLELSKIEQGEVELKMTDVVLEDTVHYCLST 842

Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-R 714
           +     +  + ++   D K   +   AD  +L Q+    LSNA+ ++     V+L A   
Sbjct: 843 VDPMAQKYLVELER-PDWKSFDYHVYADELKLKQVMLNFLSNAIKYNRPDGKVMLAATLL 901

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVS 773
           + G    SV + G  IP+D   +VFN +    H      G G+GL+I +  + L GG + 
Sbjct: 902 ETGKVRISVTDTGYGIPKDKQSNVFNSYDRLGHESSTIEGTGIGLNITQQLVFLMGGDIG 961

Query: 774 ISSSD 778
            SS +
Sbjct: 962 FSSQE 966


>gi|66045681|ref|YP_235522.1| response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256388|gb|AAY37484.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:CHASE3
           [Pseudomonas syringae pv. syringae B728a]
          Length = 1172

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  +   
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFT 595

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++G  
Sbjct: 596 VDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSGIG 655

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 656 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|291534447|emb|CBL07559.1| EDD domain protein, DegV family [Roseburia intestinalis M50/1]
          Length = 891

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 142/259 (54%), Gaps = 13/259 (5%)

Query: 542 FVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           F+ +T S   +R   EK +A L  A   ++ F+ ++S+E+R+P+  IIG  ++  T +  
Sbjct: 179 FIQITLS-EYQRKENEKQQAELVAAMNTQSRFLANMSHEIRTPINTIIGLNEM--TLREE 235

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+    +    I ++S +LL+L+NDILDL+ ++AG M++  +     +L +E+  +   
Sbjct: 236 NLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGELFSEIVNTTWI 295

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718
           + HE N+   V    KL S +  D  R+ Q+ + ILSNA+ ++ KGS T+ +++ +   D
Sbjct: 296 RAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTLFVESEQTGAD 355

Query: 719 FIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHV 772
            I    +V + G  I +D  K +F+ F    + G  +G+   GLGLSI    +NL GG +
Sbjct: 356 EILLKMAVIDTGMGIRQDDMKYLFDSF-KRVNEGSTKGIEGTGLGLSICSQLVNLMGGQI 414

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S  +  +T    IP K
Sbjct: 415 TVDSIYQKGSTFTITIPQK 433


>gi|298491151|ref|YP_003721328.1| histidine kinase ['Nostoc azollae' 0708]
 gi|298233069|gb|ADI64205.1| histidine kinase ['Nostoc azollae' 0708]
          Length = 613

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+ L + +++KN F+ + S+E+R+PL++IIGFT LL          +  +Y+  I +S  
Sbjct: 222 NQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYEPERQRHQEYLHIIQSSGK 281

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+L+NDILDL+ ++A  +++ +  + ++ L   V   +  K     +++++  +  + 
Sbjct: 282 HLLDLINDILDLSKIEANQLEVQWEIVEVSTLCRNVLALVKEKAANKGLKLRLEIENDVT 341

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           + V D  RL Q+   +L NA+ F++ GS V L+ +  +    FSV + G  I ++    +
Sbjct: 342 NLVVDPLRLKQMLLNLLFNAVKFTNLGS-VGLRVSIKDLYLRFSVWDTGIGISQENQTRL 400

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
           F  +  + N   G   G GLGL + +    +HGG++ + S+ D+G
Sbjct: 401 FRPYSQIINPGAGSNEGSGLGLVVTQQLAEIHGGYLELESAIDQG 445


>gi|29346647|ref|NP_810150.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338544|gb|AAO76344.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 641

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 6/235 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     G+   +Q
Sbjct: 397 DLLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GNTEEEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L  +V  S++      N
Sbjct: 455 QTYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCRQVVASVSVSRQSGN 514

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKN 725
            +   +SD +      D QR+ Q+   ++SNA  F+ KG   +  +  +  +  +FSV +
Sbjct: 515 -QFLFVSDYESFRMTTDIQRMQQVIINLMSNADKFTRKGQITLEFSVNEETEMAVFSVTD 573

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            G  IP++  K VF RF       Q  G GLGLSI +  ++   G + I S   G
Sbjct: 574 TGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGDIWIDSEYTG 626


>gi|86356371|ref|YP_468263.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CFN 42]
 gi|86280473|gb|ABC89536.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CFN 42]
          Length = 1266

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + 
Sbjct: 1009 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 1068

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Y+EY   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++E    +  
Sbjct: 1069 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 1126

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  + + NG  
Sbjct: 1127 QANGQRVIIRTALSHSVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 1186

Query: 720  IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  V++ G  +     D     F +  S   R +  G GLGL + ++ ++ +    SI+S
Sbjct: 1187 VLRVRDTGIGMTRAELDHAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAIFSINS 1246

Query: 777  SDEGVTTINCRIPSK 791
            +    T +    PS+
Sbjct: 1247 APNEGTLVEITFPSQ 1261


>gi|126734383|ref|ZP_01750130.1| hypothetical protein RCCS2_09489 [Roseobacter sp. CCS2]
 gi|126717249|gb|EBA14113.1| hypothetical protein RCCS2_09489 [Roseobacter sp. CCS2]
          Length = 518

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 149/329 (45%), Gaps = 25/329 (7%)

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
           +QND A+ ++ + +     + + S +    EL    L C   +   ++   +      LV
Sbjct: 108 SQNDPAVFVDVKHTDDRLRISLNSDEDWTRELVTLRLSCDASNAQTALMHGIAIHSTQLV 167

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           W  D  G++LWAN +Y        +     +G  +     + ++  +     +K     +
Sbjct: 168 WQEDCNGNLLWANTAYVDTLRDLDV--PTILGSGKDHLTGQKRRIAVKLVQDKKEEWFDI 225

Query: 267 STLEHGN------NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA 320
           ST+ H +      N + +IVR  N+  E                L  T+     L++ +A
Sbjct: 226 STVAHADGWLHFANNATEIVRADNARSE------------FVKTLGKTF---GELSIGLA 270

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           IF +NR L   N +F ++  +   FL+ NP+ D +L+ +R    +PE  N+ +W+E   +
Sbjct: 271 IFGKNRQLTMFNPAFGDMTSLPFDFLSANPAIDTVLDRMRELRMMPEPKNYTSWREQFTA 330

Query: 381 VYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           V  +++  T+   W LP GQT  V     P G    +FE+++ +V L  ++   ++    
Sbjct: 331 VEDAAKNGTYSKNWTLPEGQTYRVTGRPYPGGAFALLFEDISAEVSLTRRFRLDIETGQA 390

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            +D LS+ +AVF   G + +SN A+ +LW
Sbjct: 391 VLDTLSDAIAVFSSTGTLVMSNRAYAALW 419


>gi|327193898|gb|EGE60773.1| hypothetical protein RHECNPAF_1340019 [Rhizobium etli CNPAF512]
          Length = 538

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 5/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+V   +RAE A +   +A   A++ K+ F+  VS+ELR+PL  I+GF+D+L     G  
Sbjct: 243 VSVEQQLRAE-AQSRAADA-ESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKF 300

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N +Q +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A +
Sbjct: 301 ENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQ 360

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                + +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    
Sbjct: 361 AKTKGVTLTSRIQRSLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSIDAAARDGILKL 420

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  I  D    +   FV   +   RR  G GLGLS+V+  + LHGG+ +I+S   
Sbjct: 421 TVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIASQPG 480

Query: 780 GVTTINCRI 788
             T I   I
Sbjct: 481 EGTIITIEI 489


>gi|224370417|ref|YP_002604581.1| multidomain fusion protein (N:DNA-binding domain/C:signal
           transduction histidine kinase) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693134|gb|ACN16417.1| multidomain fusion protein (N:DNA-binding domain/C:signal
           transduction histidine kinase) [Desulfobacterium
           autotrophicum HRM2]
          Length = 772

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 138/287 (48%), Gaps = 39/287 (13%)

Query: 529 SIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKN----SFVQHVSYELRSP 583
           SI PL +A+  +T +V V + V   + + ++ E  R+A E+ N     F+  +S+ELR+P
Sbjct: 322 SISPLCDARGNITHYVAVKEDVTETKRILQELEKAREAAEVSNIAKSDFLTSMSHELRTP 381

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIGF+++L+    G L  KQS+Y++ I  +   LL+L+NDILDL+ V+AG M L   
Sbjct: 382 LNAIIGFSEVLQDRFFGPLTDKQSEYLDDILGAGQHLLSLINDILDLSKVEAGKMMLEIK 441

Query: 644 TIVLNDLLNE----VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           ++ ++D +      +K+ IA   H   ++          +  AD ++L QI   ILSNA+
Sbjct: 442 SVKVSDAIETGLVMLKEKIAC--HGITVKTDFKETCHKLTLAADERKLKQIIFNILSNAV 499

Query: 700 DFSSKGSTVILKAARDNGD------------------------FIFSVKNNGSSIPEDMC 735
            F+  G T+ ++    + D                         I S+ + G  I  +  
Sbjct: 500 KFTPDGGTITIEMMVLDPDPIPGTDILPDWMQKATGQVGKQPHLIISIADTGIGISSEDL 559

Query: 736 KSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             +F  F       R    G GLGL + +    LHGG  +I +  EG
Sbjct: 560 PHIFEEFYQTLAGIRASTPGTGLGLPLSKRMAELHGG--TIMAHSEG 604


>gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 789

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 114/215 (53%), Gaps = 6/215 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ H+S+ELR+PL  I+G+  +LK     +L+ +Q   +  I  S   LL L+
Sbjct: 322 ANQAKSDFLAHMSHELRTPLNAILGYAQILKLDT--TLDQRQINGLTVIQRSGEHLLMLI 379

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD+A ++AG M+LN S + L  L++ + +SI  K  E  +         L + V  D
Sbjct: 380 NDILDIAKIEAGRMELNLSDVSLEQLVHFIAESIRVKATEKGLAFACEMPPDLPAGVRVD 439

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
             RL Q    +LSNA+ F+ +GS  +  A        F V++ G  I E   + +F  F 
Sbjct: 440 EIRLRQALLNLLSNAIRFTEQGSVRLSVAFTPPTRLCFEVQDTGIGIDEGRLEEIFRPFE 499

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VS+  R +  G GLGL+I    + L GG + + S
Sbjct: 500 QVSD-ERHRFGGTGLGLAISRQLVRLMGGEIHVES 533


>gi|88857213|ref|ZP_01131856.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
 gi|88820410|gb|EAR30222.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
          Length = 732

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 135/243 (55%), Gaps = 13/243 (5%)

Query: 555 LTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +T+ N+A      ++++K+ F+ ++S+E+R+P+  I+GF  LL++S L     +Q  ++ 
Sbjct: 350 ITKLNQAKLDAESSEQLKSQFLANMSHEIRTPMNGILGFVQLLQSSHL---TPEQEDFLH 406

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +I++SS +LL ++NDILDL+ ++A  + L+     L  +L +V            I+I+ 
Sbjct: 407 HINSSSKMLLTIINDILDLSKIEANQLTLHVMPCNLTQILQDVVTLFKPACLAKGIKIEF 466

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILK---AARDNGDFIFSVKNNG 727
            ++     +  D  R+ QIF+ ++SNA+ F+ KG  T+ LK   A  +N  F  +V++ G
Sbjct: 467 TANAAYWVY-CDEMRVKQIFTNLISNAIKFTLKGKVTLTLKKITATDENTQFEVNVEDTG 525

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +D+   +F  F+       RR  G GLGLSI +  I L  G++S++S +   T   
Sbjct: 526 IGIADDVIGKLFKPFIQAQGDTTRRFGGTGLGLSISKRLIELMQGNISLTSKEHVGTQFL 585

Query: 786 CRI 788
            R+
Sbjct: 586 VRL 588


>gi|95931098|ref|ZP_01313824.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95132843|gb|EAT14516.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 1279

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 12/236 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +AE AL    EA  +A + K+ F+ H+S+++R+PL ++IGFTD+L T     +   Q  Y
Sbjct: 780  QAEAALLVAKEAAEQATKAKSVFLAHMSHDIRTPLNSVIGFTDILDTLIKDPV---QKGY 836

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +  I      LL ++NDILDL+ ++AG M L+   +  + L  +++Q    ++   N+  
Sbjct: 837  LRSIKIGGKALLGIINDILDLSKIEAGQMVLHRENVNPHQLFRDMEQLFHEQIRHKNLNF 896

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG----DFIFS 722
             V  D  L  S + D  RL QI   ++ NA+ F+ +G     + K  RD      D    
Sbjct: 897  VVDVDEALPQSLLVDAVRLRQILLNLIGNAIKFTEQGYVTLRVQKIFRDAQCSKLDLQID 956

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            V+++G  I  D  +S+F  F  +  + +RR  G GLGL+I +  + +  G + ++S
Sbjct: 957  VEDSGMGISPDDHESIFQMFQQSKGQDERRFGGSGLGLAICQKLVTMMDGEIHVAS 1012


>gi|114769184|ref|ZP_01446810.1| sensory box histidine kinase/response regulator [alpha
           proteobacterium HTCC2255]
 gi|114550101|gb|EAU52982.1| sensory box histidine kinase/response regulator [alpha
           proteobacterium HTCC2255]
          Length = 843

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 136/265 (51%), Gaps = 11/265 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A  M    +++D   AE+ L E  +   + D+ K+ F+  +S+E+R+PL  IIG  DLL
Sbjct: 321 DAIYMAYIRDISDRKVAEKILIEARDRAERTDKAKSQFLAVMSHEMRTPLAGIIGVMDLL 380

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K +   +L+ KQ  YV+  ++S  ++L  +N+ LD+  ++ G  +L+     L DL   +
Sbjct: 381 KAT---NLSKKQDHYVQIATSSGEVMLEHINEALDITRIEGGAFELSPQEFNLPDLARSL 437

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + +    +E  + +++ I D     F+ D  R+ QI + +L N++ F+ +GS   + + 
Sbjct: 438 VEVLKPLANEKELSLELQIDDNIKAYFLGDSHRIRQILTNLLGNSIKFTDEGSIQFVISC 497

Query: 714 RDNGD---FIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLH 768
               D     F++ + G  I  +  + +F  FV  S+    Q RG GLGLSI        
Sbjct: 498 SHEADVSRLKFTITDTGLGIAPENHEKIFEDFVAISSGDERQSRGDGLGLSISRKIARQM 557

Query: 769 GGHVSISSS-DEGVTTINCRIPSKE 792
           GG + + S+ +EG T I   +P K+
Sbjct: 558 GGDIIVESNINEGATFI-LNLPLKQ 581


>gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1]
 gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1]
          Length = 949

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLHTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  +S SS++LL +++DILD + +++  +K+        ++++ +  +
Sbjct: 499 ELP---KGVDRLVTAMSNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    D  +    V D  RL Q+ S +LSNA+ F+  G  +IL   +D+
Sbjct: 556 YLPLVVRKQLGLYCFIDPDVPPQMVGDPMRLQQVISNLLSNAIKFTDMG-CIILHLRQDS 614

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                SV++ G  IP      +F+ F       QR  +G GLGL+I E  IN+  G +++
Sbjct: 615 DYLSISVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIAV 674

Query: 775 SSSDEGVTTINCRIP 789
            S     +    RIP
Sbjct: 675 DSEPGMGSQFTIRIP 689


>gi|121591384|ref|ZP_01678667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           2740-80]
 gi|121546763|gb|EAX56935.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           2740-80]
          Length = 727

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 1051

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 129/233 (55%), Gaps = 14/233 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERA   K++A+ +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L + Q  YV
Sbjct: 381 AERA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLADT---PLTATQRDYV 433

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   ++ K+ E  I + 
Sbjct: 434 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKVKEKGIELT 493

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
           V IS       V D  RL Q+    +SNA+ F+ +GS  +    L++        FSV++
Sbjct: 494 VSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAVIEFSVQD 553

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +G  I E   K +F  F        R+  G GLGL+I    + L GG + + S
Sbjct: 554 SGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLES 606


>gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
 gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
          Length = 725

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 10/222 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A++ K+ F+ ++S+E+R+P+  IIG   LLK +    L+ +Q +++E +  SS  LL++
Sbjct: 192 QANQKKSEFLANMSHEIRTPMNGIIGMASLLKGT---PLDEEQREFIEMLETSSLSLLDI 248

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682
           +NDILD + ++AG ++L+   + L +L  +++     +  E  +  +   D  L    V 
Sbjct: 249 INDILDFSKIEAGKLELDSVELNLFELCKDIEHLFRLRTKEKGLEFECGLDQNLTPLLVG 308

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+   ++ NA+ F+  G   +    +  A DN    F V++ G  IP D  K+V
Sbjct: 309 DAPRLRQVMINLVGNAVKFTQSGKVSVSIRQVAEAGDNITVTFEVEDTGIGIPADKLKTV 368

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F +F        R   G GLGL+I    + L GG + + S +
Sbjct: 369 FEKFEQADGSMSRNFGGTGLGLAISSQIVELMGGEIEVESRE 410


>gi|319787875|ref|YP_004147350.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466387|gb|ADV28119.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
          Length = 287

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 118/216 (54%), Gaps = 3/216 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E L++  ++K+ F+ ++S+E R+PL +I+  T LL+    G LN +Q + V ++S
Sbjct: 39  LDQQAEQLKEVSDLKSRFLSYMSHEFRTPLGSILSITRLLEEGMDGPLNDEQLRQVRFVS 98

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIRIKVIS 673
           +++  L ++V+D+LDLA ++AG + ++ +   L DL + ++      + + +++ +    
Sbjct: 99  SAAVELRDMVDDLLDLAKIEAGRISISPAWFDLMDLFSALRGMFRPLVDDAHHVELVFEE 158

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ KG   I       G   FSV++ G  IPE 
Sbjct: 159 PPPLPMLYTDDKKLAQILRNFISNALKFTPKGRVAISARPEGVGFVRFSVRDTGIGIPEH 218

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           M  ++F  F  V    + + RG GLGL++   F  L
Sbjct: 219 MLGALFEDFIQVDTPIQKRLRGTGLGLALCRRFAEL 254


>gi|48374236|gb|AAT41932.1| putative two component hybrid sensor kinase [Fremyella diplosiphon
           Fd33]
          Length = 582

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 4/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK ++L+KA+E+K  F+ ++S+E R+PL +I+  + +L     G L ++Q + V +I 
Sbjct: 203 LDEKADSLQKANELKTRFLSNMSHEFRTPLNSILSLSRMLLARMDGDLTAEQEKQVTFIQ 262

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIRIKVIS 673
            +++ L  LVND+LDLA V+AG +++  S+  ++DL   ++  +   + + +++ + +  
Sbjct: 263 KAASGLSELVNDLLDLAKVEAGKIEVRPSSFEVSDLFATLRGMLRPLLVQGSSVALNIEE 322

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +G   +D  ++ QI    +SNA+ F+ +G   +    R +   IFSV + G  I   
Sbjct: 323 PEGIGQMYSDEGKVAQILRNFVSNALKFTEQGEVRVSAMQRGHA-VIFSVSDTGIGIAIA 381

Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F  FV   ++ + Q +G GLGL +      L GG +S+ S     +T    IP
Sbjct: 382 DQERIFEDFVQIESSLQKQVKGTGLGLPLSRKLTELLGGSISVESKLGQGSTFTASIP 439


>gi|239834297|ref|ZP_04682625.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
 gi|239822360|gb|EEQ93929.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
          Length = 1047

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 171/385 (44%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+                       Y+  +    
Sbjct: 679  LDTATDGVVLIDPEGRIRSMNHSASALFG----------------------YDREETEGK 716

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 717  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 776

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 777  FCAVLRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADE 836

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 837  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIA 896

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 897  LMQPQANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 956

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 957  NGDVVMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAESAKDWRNEGTGLGLPLTKAMV 1016

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1017 EANRAQFAIDSTPGHGTVVEIAFPP 1041


>gi|16330151|ref|NP_440879.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652639|dbj|BAA17559.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 998

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 16/248 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  L E  E+   A+ +K+ F+ ++S+E+R+P+  I+GF DLL    L SL S+  +Y
Sbjct: 581 RIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQKDL-SL-SQTKKY 638

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I +SS ILL L++DILD++ ++AG + ++   + L  ++ E+KQ    K    ++ +
Sbjct: 639 LNAIGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLL 698

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFI--- 720
            +  D  L   +  D  RL QI   ++ NA+ F+ +G   I         R  G +I   
Sbjct: 699 TIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLA 758

Query: 721 FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             V + G  I PED  K +F+ F  +  +  R+  G GLGL+I      L GG +S+SS 
Sbjct: 759 IEVTDTGIGIAPEDQAK-IFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSR 817

Query: 778 -DEGVTTI 784
             EG T I
Sbjct: 818 LGEGSTFI 825


>gi|262173448|ref|ZP_06041125.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
 gi|261890806|gb|EEY36793.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
          Length = 1586

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 124/258 (48%), Gaps = 16/258 (6%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            N+TD +  E+ L +      +A + K+ F+ + S+E+R+PL  I+G T LL      SL 
Sbjct: 817  NITDRLAFEQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDE---SLT 873

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q + V+ I  S   LL +VND+LDL+ ++A  M L    + L + L EV    +T+  
Sbjct: 874  ESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAE 933

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV---------ILKAA 713
              N+  K+     L  +V AD  RL QI + +LSNA+ F+S G            I K A
Sbjct: 934  AKNLDFKLEMGVDLPHWVIADSMRLRQILTNLLSNALKFTSVGHIALRAEIIDKFIWKGA 993

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
              N    FS+ + G  I E+  K +F  F        RR  G GLGLSIV     L  G 
Sbjct: 994  EKN-IVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLSGLMEGK 1052

Query: 772  VSISSSDEGVTTINCRIP 789
            + + S +   +T    +P
Sbjct: 1053 IGVESREGQGSTFWTEMP 1070


>gi|237715167|ref|ZP_04545648.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408882|ref|ZP_06085427.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445000|gb|EEO50791.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353093|gb|EEZ02188.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 754

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 138/272 (50%), Gaps = 12/272 (4%)

Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Y+   LP  +  T    +N+ D    E  L E    L +  E+K SF+ ++S+E+R+P
Sbjct: 488 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTP 546

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +I+GF ++L     G  + ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++ 
Sbjct: 547 LNSIVGFANILALED-GLSSVEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 605

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + +L++++  +    +  +   +K + D  L     DR+RL+Q+ +  L+NA  F+ 
Sbjct: 606 RCKVRELIDDIYMTHQVLIAPHLEFLKEVDDTPL-EINVDRERLIQVLTNFLNNACKFTE 664

Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            G   +      D G+    V+++G  IP +  + +F+RF       Q  G GLGLSI +
Sbjct: 665 TGYIKLGYSYLPDEGNVQIYVEDSGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQ 722

Query: 763 SFINLHGGHVSISS----SDEGVTTINCRIPS 790
             I   GG + + S           + CR+ S
Sbjct: 723 VIIEKLGGKIELKSEVGKGSRFTVILPCRVVS 754


>gi|240145207|ref|ZP_04743808.1| sensory box sensor histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
 gi|257202724|gb|EEV01009.1| sensory box sensor histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
          Length = 891

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 142/259 (54%), Gaps = 13/259 (5%)

Query: 542 FVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           F+ +T S   +R   EK +A L  A   ++ F+ ++S+E+R+P+  IIG  ++  T +  
Sbjct: 179 FIQITLS-EYQRKENEKQQAELVAAMNTQSRFLANMSHEIRTPINTIIGLNEM--TLREE 235

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+    +    I ++S +LL+L+NDILDL+ ++AG M++  +     +L +E+  +   
Sbjct: 236 NLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGELFSEIVNTTWI 295

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718
           + HE N+   V    KL S +  D  R+ Q+ + ILSNA+ ++ KGS T+ +++ +   D
Sbjct: 296 RAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTLFVESEQTGAD 355

Query: 719 FIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHV 772
            I    +V + G  I +D  K +F+ F    + G  +G+   GLGLSI    +NL GG +
Sbjct: 356 EILLKMAVIDTGMGIRQDDMKYLFDSF-KRVNEGSTKGIEGTGLGLSICSQLVNLMGGQI 414

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S  +  +T    IP K
Sbjct: 415 TVDSIYQKGSTFTITIPQK 433


>gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341374|gb|AAO79162.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 921

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 21/240 (8%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E+ L    +     D +K++F+ ++S+E+R+PL  I+GF+DLL  T  +   
Sbjct: 675 DITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDTENI--- 731

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K+
Sbjct: 732 -EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKV 790

Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            EN   ++++ D  L     ++DR RL Q+ S  ++NA+ F+S+GS  +    +  G+ +
Sbjct: 791 KEN---VELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGSIRV--GYKQKGEEL 845

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F V++ G  I  +    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 846 EFYVQDTGVGIDAESQAHIFERFVKLNSFVH-----GTGLGLSICQSIVEQMGGKIGVES 900


>gi|56751048|ref|YP_171749.1| two-component hybrid sensor and regulator [Synechococcus elongatus
           PCC 6301]
 gi|56686007|dbj|BAD79229.1| two-component hybrid sensor and regulator [Synechococcus elongatus
           PCC 6301]
          Length = 577

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 136/263 (51%), Gaps = 25/263 (9%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           RA + L E+ +AL +A        ++K  F+ + S+ELR+PLT +IG+  LL+   L   
Sbjct: 309 RANQTLLEQQQALIEAHRQSEALSQLKTDFLANTSHELRTPLTGMIGYLQLLQ-DDLAET 367

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +++     S+  LL ++NDILD+A ++AG ++L   T+ L +LL EV+  + ++ 
Sbjct: 368 PEERQEFIAGAYHSALHLLGIINDILDIARIEAGRLQLQAETVPLRNLLAEVETCLRSQA 427

Query: 663 HENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARD 715
               +  R ++ ++ +  +   DRQR LQ+   ++ NA+ F+  G     +T + +    
Sbjct: 428 QAKGLVYRCRIAAETESVALWGDRQRSLQVLFNLVGNAIKFTLTGYVEVRATAVWQPLCA 487

Query: 716 NGDFI-----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
           NG  +       ++++G  +  +   S+F  F S A     R   G GLGL I    +  
Sbjct: 488 NGQNLPGYLRLEIEDSGIGVAPERQGSLFQSF-SQADSSLTRQFGGSGLGLVICRRLLES 546

Query: 768 HGGHVSISSSDEGV-TTINCRIP 789
            GG V + S  EG+ TT+ C IP
Sbjct: 547 MGGIVELFSPGEGLGTTVTCLIP 569


>gi|330505537|ref|YP_004382406.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328919823|gb|AEB60654.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 640

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ ++++N FV  VS+ELR+PLT I G   L+    LG +     Q +E   ++S  L +
Sbjct: 407 KRGEQLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQAMRQMLEIAQSNSQRLRH 466

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++D+LD+  + AG M+ +   + L  LL +  ++       + +++++++       +A
Sbjct: 467 LIDDLLDMDKLVAGKMQFDLQPLQLRPLLQQALRNNQPYAERHQVQLQLLASADC-QVMA 525

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+ + +LSNA  FS+ G TV L A    G    SV++ G  I ED    +F++F
Sbjct: 526 DAQRLEQVLANLLSNAAKFSAAGQTVELAAGLAQGWVRISVRDYGQGIAEDFKPRIFSKF 585

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   RR  G GLGL+I +  I   GG +   S++   +T    +P
Sbjct: 586 AQADAGDTRRQGGTGLGLAISKEIIEHMGGRIGFDSTEGQGSTFWLSLP 634


>gi|322434681|ref|YP_004216893.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
 gi|321162408|gb|ADW68113.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
          Length = 577

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 14/225 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT+++E     D IK+ F+  VS+ELR+PLT+I G   LL    +G +++K    +    
Sbjct: 54  LTQRSEL----DTIKDEFISTVSHELRTPLTSIRGALGLLSAGMMGEVDAKAQNLLRIAV 109

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-----KMHENNIRI 669
            ++  L+ L+NDILDL  +++G   L+     L DL   V+QS+ T     +  +  + +
Sbjct: 110 TNTDRLIRLINDILDLERMESGRAPLHVRRCSLRDL---VQQSVETMTPMAQTAQVELTL 166

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            ++S  +   F  D  R+LQI + +LSNA+ FS   S V ++   D    +  V + G  
Sbjct: 167 ALLSPPEGMYFDGDPDRILQILTNLLSNAIKFSPAQSIVTIQVEADLDSVLVRVADQGRG 226

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           IP +   ++F+RF  V  +   Q+ G GLGL+I  + +  H G +
Sbjct: 227 IPLEKLDTIFDRFQQVEASDARQKGGTGLGLAICRTIVLQHNGSI 271


>gi|298384963|ref|ZP_06994522.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262107|gb|EFI04972.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 931

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 134/240 (55%), Gaps = 21/240 (8%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E+ L    +     D +K++F+ ++S+E+R+PL  I+GF+DLL  T  +   
Sbjct: 685 DITELKETEKELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDTENI--- 741

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K+
Sbjct: 742 -EERREYIQIVKENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKV 800

Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            EN   ++++ D  L     ++DR RL Q+ S  ++NA+ F+S+GS  +    +  G+ +
Sbjct: 801 KEN---VELMFDPHLAECRIISDRNRLHQVISNFVNNAIKFTSEGSIRV--GYKQKGEEL 855

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F V++ G  I  +    +F RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 856 EFYVQDTGVGIDAESQAHIFERFVKLNSFVH-----GTGLGLSICQSIVEQMGGKIGVES 910


>gi|158333452|ref|YP_001514624.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158303693|gb|ABW25310.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 788

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 128/255 (50%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + M    ++T+  RAE  +       R+ +E+K+ FV   S+E R+PL  I+   +LL+ 
Sbjct: 535 EVMAVIRDITERKRAEDDIRNALNKERELNELKSRFVAMTSHEFRTPLATILSSAELLEH 594

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  +++ +++  I  S   +  L+ND+L L   ++G +  N   + L +    + +
Sbjct: 595 YGHKWDETRKLKHLSQIQQSVDHMTGLLNDVLLLGKAESGNLAFNPVPMQLTEFCTGLAE 654

Query: 657 --SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              I T+ HE   R++     +L     D + L  IF+ +LSNA+ +S +G  +      
Sbjct: 655 ELQITTQTHEIVCRLQ----EQLTEVQMDEKLLRHIFTNLLSNAIKYSPQGGIINFDLVF 710

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           ++ + I  V+++G  IP   C  VFN F    + G   G GLGL+IV+  ++LHGG +++
Sbjct: 711 ESDEAILKVQDHGLGIPPSECSHVFNSFNRATNVGNISGTGLGLAIVKRSVDLHGGEITL 770

Query: 775 SSSDEGVTTINCRIP 789
           +S +   T    R+P
Sbjct: 771 TSQETVGTIFTVRLP 785


>gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1198

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 131/241 (54%), Gaps = 7/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +K E L ++ + K+ F+ ++S+ELR+PL +I+  + L+  +K   L+ +  +Y E I 
Sbjct: 517 IQQKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENK--DLDKEYIEYAEVIQ 574

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL L+++ILDL+ ++AG MKL ++++ ++++  +++   +       ++  V  +
Sbjct: 575 SSGQGLLGLIDEILDLSKIEAGKMKLEFASVNIDEVSTDMRSMFSPLAKNKQLQFAVEVE 634

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
            ++     D+ RL QI   +LSNA+ F+++G   +     D+G F+ F+V + G  I  D
Sbjct: 635 ERIPEVETDKMRLEQILKNLLSNAIKFTTQGKVSLTVKKDDSGKFVQFTVTDTGIGIATD 694

Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +F  F   A    RR   G GLGLSI      + GG + ++S +   ++    +P 
Sbjct: 695 KQGLIFEAF-QQADGSTRRKFGGTGLGLSISRELAKILGGEIELTSKENVGSSFTFSLPV 753

Query: 791 K 791
           +
Sbjct: 754 R 754


>gi|83944134|ref|ZP_00956590.1| probable sensor/response regulator hybrid [Sulfitobacter sp. EE-36]
 gi|83845001|gb|EAP82882.1| probable sensor/response regulator hybrid [Sulfitobacter sp. EE-36]
          Length = 1064

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K DEIKN FV  VS+ELR+PLT+I G   L++ S   ++ +   + +E    ++  L  
Sbjct: 695 KKIDEIKNEFVSTVSHELRTPLTSIKGALGLIEMSARDTMPASALRLIEIARNNADRLTT 754

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           +VNDILDL  + +G +  + S + LN++++   Q +      +N ++ + + D  + +  
Sbjct: 755 IVNDILDLEKISSGKIDFDLSPMSLNEVISSAVQEMMPFAVTHNTKLVMDLPDTDI-NVT 813

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  R++Q+ + ++SNA  +S++G+ V +KA       I  V+N G  +PE+    +F  
Sbjct: 814 ADWSRMMQVLANLMSNACKYSTEGTDVTIKAETIGDMAIVYVQNFGPGVPENFKNRIFQA 873

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           F S A     R   G GLGL+I    +   GG++   S   G T
Sbjct: 874 F-SQADGSDTRAKGGTGLGLNITRQIVWRQGGNIGFESKPSGTT 916


>gi|308069281|ref|YP_003870886.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858560|gb|ADM70348.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 482

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622
           + ++IK+ F+  +S+ELR+PLT+I G+++ L +   G  + ++++  ++ IS  +  L+ 
Sbjct: 243 RTNQIKDDFISSISHELRTPLTSIKGWSETLNS---GGYDPEETKIGMKIISKETDRLIG 299

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV +ILD + ++   MKL   T+ L +LL E+  ++  K     I++++ S+        
Sbjct: 300 LVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMKQIKLQLDSEETAYLVHG 359

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+F  I+ NA+ FS + S + L   R +G+   SV++ G  I  +    V +RF
Sbjct: 360 DGNRLKQVFLNIVDNAIKFSHESSIIFLSLQRIDGNIEISVQDTGIGISAENLARVRDRF 419

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               H  Q  G GLGL+I + FI  H G + I S     TTI   +P+
Sbjct: 420 FQVDH--QNGGTGLGLAISQQFIERHHGQMLIRSELGAGTTITVSLPA 465


>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 914

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 19/246 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L  +NVT+ V+A R    + EA   A   K  F+ ++S+E+R+P+  +IG T+LL    
Sbjct: 241 LLNVINVTELVKARR----EAEAASMA---KGQFLANMSHEIRTPMNAVIGMTELL---- 289

Query: 599 LGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           LG+ L+++Q +YVE + +++  LL L+NDILD + +++G ++       L  ++  V + 
Sbjct: 290 LGTDLDTEQQEYVEIVKSAANGLLTLINDILDFSKIESGKLEFEKIAFDLRYVIEGVGEM 349

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +A       +      D       + D +RL Q+   +  NA+ F+ KG+  I  A    
Sbjct: 350 MAPNAQTKQLEFTCFVDPDCEVRLLGDPERLRQVLVNLTGNAVKFTEKGNVDIHAAMIGE 409

Query: 717 GDFI----FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
            D +    F++ + G  IP+D  ++VFN F  V  +   Q  G GLGLSI +  + L GG
Sbjct: 410 EDGMVLIRFAISDTGMGIPKDRQEAVFNSFTQVDGSSTRQFEGTGLGLSISKRLVALMGG 469

Query: 771 HVSISS 776
            + + S
Sbjct: 470 RMGLDS 475


>gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
 gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
          Length = 1386

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 4/230 (1%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +  E   +A+  K+ F+  +S+ELR+PL+ ++    LL+   +   ++K  +  E I  S
Sbjct: 982  QAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRRGTMD--DAKIKRASEAIERS 1039

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            + + + L++D+LD++ +  G +++ + T+ L  ++    +S++ +    +I  +   D  
Sbjct: 1040 TKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSILFETTLDES 1099

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            LG    D  RL QI   +L+NA+ FS++G  V +   R  G     V + G+ I  +  +
Sbjct: 1100 LGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERMEGSARLQVSDRGAGIEAEALQ 1159

Query: 737  SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             +F+RF+       R   G+GLGL+IV   + LHGG V   S  +G   I
Sbjct: 1160 RIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAI 1209


>gi|323699910|ref|ZP_08111822.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1033

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 16/233 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN F+ ++S+E+R+PL  ++G   L++ S+L  L   Q  Y++    S   LL ++NDIL
Sbjct: 663 KNEFLANMSHEIRTPLNGLLGMLQLMQMSELAPL---QRDYLDTALNSGRSLLQVLNDIL 719

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           DL+ V++G ++L      L ++L++V  +      E  + ++   D  L   FVAD+ RL
Sbjct: 720 DLSKVESGKLELEPIPFELGEVLDQVVSTFRHCAEERGVSMRWEIDETLPRHFVADKGRL 779

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNR 741
            QI   ++ NA+ F+  GS  +     D+G        +F V + G  IP D   +VF+ 
Sbjct: 780 RQILFNLVGNAVKFTESGSIEVRACPLDSGAEDGTIRLLFEVSDTGIGIPRDKVSTVFDP 839

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT----TINCRI 788
           F  V  +   + +G GLGL IV   + L GG +++ + +   T    TI  RI
Sbjct: 840 FTQVDGSSTRKYQGTGLGLGIVRRLVALMGGSITVDTEEGKGTSLYFTIRTRI 892


>gi|153870226|ref|ZP_01999670.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152073308|gb|EDN70330.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 623

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 133/249 (53%), Gaps = 9/249 (3%)

Query: 550 RAERALTEKNEA------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           R E  L  KN+A        +A+  K+ F+ ++S+ELR+PL  I+G++++L+        
Sbjct: 104 RTEELLHAKNQAEHAQRLAEEANVTKSQFLANMSHELRTPLNAILGYSEILQEEAEELGQ 163

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+    ++ I ++   LL L+ND+LD++ ++AG M L+  T  L  ++ EV  +I  ++ 
Sbjct: 164 SECISDLQRIYSAGKHLLELINDVLDISKIEAGKMDLSLETFDLAIVIKEVISNIQPQVE 223

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFS 722
           +    ++V     LG+ ++D  +L Q+   +LSNA  F+ +G+  I +K  ++   F F 
Sbjct: 224 KKANILEVKIADPLGTMLSDLTKLRQMLLNLLSNAAKFTEQGTISIEVKREQEETWFCFM 283

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V +NG  + E+  K VF  F        RR  G GLGL+I + F  + GG++ ++S    
Sbjct: 284 VTDNGIGMTEEQQKKVFQPFTQADASTTRRFGGTGLGLAITKQFAEMMGGYILVNSEFGK 343

Query: 781 VTTINCRIP 789
            +T    +P
Sbjct: 344 GSTFKLLLP 352


>gi|114705118|ref|ZP_01438026.1| putative sensor histidine kinase transmembrane protein [Fulvimarina
           pelagi HTCC2506]
 gi|114539903|gb|EAU43023.1| putative sensor histidine kinase transmembrane protein [Fulvimarina
           pelagi HTCC2506]
          Length = 774

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 165/372 (44%), Gaps = 48/372 (12%)

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES--------------------D 495
           I L+N  +R+++   E    PGT++  +    SR   ES                    D
Sbjct: 403 IILANSRYRTVFGLSEEDTKPGTNLAQVMRK-SRKPIESAQVSGSSSKRDDSSSEIKMPD 461

Query: 496 G-WDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFV------NVTD 547
           G W L +        ER++ +G + + +D + L+     L  ++  LT +        +D
Sbjct: 462 GRWLLLS--------ERRTAEGFIAIGADITQLKMHQTRLHESERRLTDIIHALSETRSD 513

Query: 548 SVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + R    L E N + R        A   K +F+ ++S+ELR+PL  I+GF+D+++   LG
Sbjct: 514 AERKAAQLEELNHSFRIEKNKAEAASRAKTTFLANMSHELRTPLNAILGFSDIMRQQMLG 573

Query: 601 SLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            + S K + Y   I  S   LL L++DILD+  ++ G   +      L + + E  + I 
Sbjct: 574 PIGSEKYTGYAHDIHESGEFLLQLIDDILDMQKIETGRTTMLRRIFDLTEAVAESARMIE 633

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             +    I + V    KL  + ADR+ + QI   ++SNA+ FS  G  V +     +G  
Sbjct: 634 ASVARRQIDLVVEQPEKLNIY-ADRRAVTQILMNLMSNAVKFSDAGGEVRVSVKERSGAV 692

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           + S+ + G  I +     +   F        R  +G GLGL+I  S   LHGG   I+S+
Sbjct: 693 LLSITDRGEGISQCNLAKIGRPFEQTESEWTRTKKGTGLGLAIARSLTELHGGRFRIAST 752

Query: 778 DEGVTTINCRIP 789
               T +  R+P
Sbjct: 753 LGEGTIVAIRLP 764


>gi|37520808|ref|NP_924185.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35211803|dbj|BAC89180.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 713

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 14/241 (5%)

Query: 553 RALTE--KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           RAL E  + EA   A+  K+ F+  +S+ELR+PL  IIGF  LL+  +   L++   + +
Sbjct: 468 RALAEQARREA-EAANRAKDEFLAVLSHELRTPLNPIIGFAQLLR--RKSGLSAADYRAL 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +  +   L++D+LD++ + +G M++    +   DLL  V  +I        ++  
Sbjct: 525 ETIERNGRLQAQLIDDVLDVSRIISGKMRVELRAV---DLLPVVAAAIEAVRSPAELKGI 581

Query: 671 VISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +S G+L    + VAD  R+ Q+   +L+NA+ F+ +G  V++   R +   +  V ++G
Sbjct: 582 CLS-GRLDDGATAVADPTRMQQVVWNLLTNAIKFTPEGGRVVIDLCRGDRTLLIRVSDSG 640

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D    VF RF        R+  G+GLGL+IV   + LHGG VS  S   G  T  
Sbjct: 641 IGISPDFLPYVFERFRQADGTSTRKHSGLGLGLAIVRHIVELHGGAVSAQSDGVGQGTTF 700

Query: 786 C 786
           C
Sbjct: 701 C 701


>gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea
           sp. MED297]
 gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea
           sp. MED297]
          Length = 1090

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 140/256 (54%), Gaps = 12/256 (4%)

Query: 537 QTMLTFVNVTDSVRAERA-LTEKNEALR-KADEI------KNSFVQHVSYELRSPLTNII 588
           Q+ L   N TD +  ++A L +   AL+ KAD++      K+ F+ ++S+ELR+PL +++
Sbjct: 510 QSNLELTNKTDVLEQQKADLEQAKLALQAKADQLSSTSRYKSEFLANMSHELRTPLNSLL 569

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
             +  L  ++ G+L+  Q + +  I      LL+L+NDILDL+ V+AG ++L Y+ + ++
Sbjct: 570 LLSQSLMKNREGNLSESQLEDIGIIHRGGRSLLDLINDILDLSKVEAGKLRLEYTDVDVH 629

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L+ E+         E ++   V ++  +      DRQRL QI + ++ NA+ F+++GS 
Sbjct: 630 QLVEEITAQFKPLADEKDLAFNVDVAMPETFRLHTDRQRLRQILNNLIGNAIKFTAEGSV 689

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
            +  A   +G   F+V++ G  I +    SVF  F  V      Q  G GLGL+I     
Sbjct: 690 TLTIAENTDGQLAFTVEDTGIGIEQAQHDSVFEAFAQVDGTTSRQHGGTGLGLTISRDLA 749

Query: 766 NLHGGHVSISS-SDEG 780
           +L GG + ++S +DEG
Sbjct: 750 SLLGGSIHLTSEADEG 765


>gi|298387446|ref|ZP_06996998.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
 gi|298259653|gb|EFI02525.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
          Length = 883

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 18/254 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T     E  L E  E   ++D +K++F+ ++S+E+R+PL  I+GF+ L+  T  +   
Sbjct: 642 DITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDTEDM--- 698

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ QY++ +  ++ +LL L++DILDL+ ++AG        + +N L  ++  ++  K 
Sbjct: 699 -EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKA 757

Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             N   ++++ D  L     ++DR RL Q+ S  ++NA+ F+ +G+  +     D     
Sbjct: 758 RPN---VEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLR 814

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V + G  I  +M   +F RFV   S  H     G GLGLSI  S +   GG + + S 
Sbjct: 815 FYVADTGIGIEPEMQNEIFERFVKLNSFVH-----GTGLGLSICRSIVEQLGGEIGVDSE 869

Query: 778 DEGVTTINCRIPSK 791
            E  +     +P K
Sbjct: 870 PEKGSCFWFTLPIK 883


>gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1120

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           ++E+AL +  E    A+  K+ F+  +S+++R+P+  ++G  +LL  S   SL+ +QS Y
Sbjct: 716 QSEQALLQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMVELLGES---SLDPEQSHY 772

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  + + LL+L+NDILDL+ ++AG +KL      L + +  V   +  K  E  +++
Sbjct: 773 LKIIRRAGSTLLSLINDILDLSKIEAGQLKLELDDFTLAETVEHVMDILRHKASEKGLQL 832

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +  +          D QRL QI   +L NA+ F+ +GS  +    + +G + F V + G 
Sbjct: 833 QTHLHIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQGSVSLTLQQQPDGQYSFQVADTGP 892

Query: 729 SIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I     K +F  FV   S  HR    G GLGLSI    +    G + + S
Sbjct: 893 GIAPHRQKIIFEPFVQEESGTHR-HFGGSGLGLSICHKLVTAMRGTLWLKS 942


>gi|52548497|gb|AAU82346.1| signal transduction histidine kinase [uncultured archaeon
           GZfos17A3]
          Length = 424

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 153/309 (49%), Gaps = 38/309 (12%)

Query: 516 GTLELLSDSVLEYSIIPLPN----AQTMLTFVNVT----DSVRAE---RALTE----KNE 560
           G+ E+   S+ E +I  +P        +L+ + +T       RAE   R L E    KN 
Sbjct: 111 GSEEIAVQSIHEGAIDYIPKDHLTKDRLLSTIKITLETWKRKRAEDEKRRLMEELETKNA 170

Query: 561 ALRKADE----------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            L+KA E          +K  F+   S+ELR+PLT +     +L+   +G L+ KQ + +
Sbjct: 171 ELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKLDKKQEKSI 230

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-----N 665
           E +  + T L NL+ DILD++ ++AG +KL+++++ LND + E     A KM E      
Sbjct: 231 EVVLRNLTRLENLIGDILDISRIEAGRIKLSFNSMNLNDAVKE-----AIKMQEAFAKGK 285

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI I+     ++ + + D +RL Q    +L+NA+ FS K   VI++  R   +  FS+ +
Sbjct: 286 NIEIRA-KLAEMPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIETKRLGKNVRFSITD 344

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +   K +F  F  + ++   +  G GLGL+I +  I  H G +   S     +T
Sbjct: 345 YGIGISKTDQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKGST 404

Query: 784 INCRIPSKE 792
               IP+K+
Sbjct: 405 FYFVIPTKQ 413


>gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 946

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 131/254 (51%), Gaps = 21/254 (8%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+ M  ++   ++ + E  L    +     +  K+ F+ ++S+E+R+P+  ++G T+LL 
Sbjct: 246 AERMRVYIAELEATKQE--LIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELLL 303

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T+   +LN++Q ++ E +  S   LL +VNDILD++ ++AG ++L++      DL+N V+
Sbjct: 304 TT---ALNAEQRKFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDF---DLVNTVE 357

Query: 656 QSI---ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +I   A +  E  I +   I     G +  D  RL Q+   ++ NA+ F+ KG   +  
Sbjct: 358 SAISLMAARAAEKQIDLGAYIEPAARGIYRGDPARLRQVLLNLIGNAIKFTEKGGVAVRV 417

Query: 712 AARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           +     D         F V + G  IPED+C  +F +F        RR  G GLGL+I +
Sbjct: 418 SVYRVEDPQTKASHLRFEVHDTGIGIPEDVCGRLFQKFSQADSSVTRRYGGTGLGLAICK 477

Query: 763 SFINLHGGHVSISS 776
             + L  G++ ++S
Sbjct: 478 QIVELMDGNIGVNS 491


>gi|163848304|ref|YP_001636348.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526218|ref|YP_002570689.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163669593|gb|ABY35959.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450097|gb|ACM54363.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 920

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 124/230 (53%), Gaps = 4/230 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  K  F+  +S+ELR+PLT + G+ +L+      +L+++Q   +E +  S+  + +LVN
Sbjct: 686 DRAKTDFIATISHELRTPLTIVRGYLELILRQSASALDAEQRDMLEEVRQSAIQMTHLVN 745

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           + + +A +DAG +++    + L  ++ E  +     + E +I++ ++    L   +ADR+
Sbjct: 746 NAIMVANLDAGQIEVQIQPVALAPVIEEALRPYRAVLSERDIQVLLVLPDDLPPVLADRE 805

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
            L Q  S++  NA  +  +G  +++ A  D+     ++ + G  IP ++   +F RF   
Sbjct: 806 LLKQALSQLFDNARRYVHQGQ-ILVSAGVDSDTLWLAISDTGPGIPTEIMGRLFTRFQRV 864

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT-TINCRIPSKE 792
           + +   +RG GLGL+I    + L GG ++++S+  +G T TI  R P + 
Sbjct: 865 DGNNSAQRGGGLGLAITRQLLELQGGSITVTSTPGQGSTFTIRLRYPKER 914


>gi|303246719|ref|ZP_07332997.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492059|gb|EFL51937.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 625

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 135/258 (52%), Gaps = 24/258 (9%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  +A+  LT  +EA    +  K++F+ ++++E+R+P+  I+G  +L   ++   L 
Sbjct: 95  DVTEFKKAKTELTAAHEAALAGERAKSNFLANITHEIRTPMIGILGMAELTLATE---LT 151

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--- 660
           SKQ +Y+E    S+  LL ++NDI+D A ++ G ++L  +     DL   V+++++    
Sbjct: 152 SKQREYLEMARHSAQSLLTVLNDIVDYARIEVGALELAKTPF---DLFATVEEAVSVFRP 208

Query: 661 -KMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
             + +N ++  + + D    + V D  RL QI   ++ NA+ F+  GS V+       K 
Sbjct: 209 LAVKKNLSLEYRFLGDVP-QNLVGDASRLRQILINLVGNAVKFTDSGSVVLAICPEPEKQ 267

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLH 768
           +       FSV++ G  IP D   ++F+ F    VS A R Q  G GLGL+IV   + + 
Sbjct: 268 SPGKVGLCFSVRDTGIGIPRDKIPAIFDSFTQADVSPARRYQ--GAGLGLAIVRHLVEMQ 325

Query: 769 GGHVSISSSDEGVTTINC 786
           GG   + S +   +  +C
Sbjct: 326 GGEYGVESEEGQGSIFSC 343


>gi|109900450|ref|YP_663705.1| histidine kinase [Pseudoalteromonas atlantica T6c]
 gi|109702731|gb|ABG42651.1| histidine kinase [Pseudoalteromonas atlantica T6c]
          Length = 662

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 12/235 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +  ER    K EA  ++   K+ F+ H+S+ELR+PLT+I+G+T+LL  SK+G   S QS+
Sbjct: 130 IEKERVDRLKAEAENRS---KDRFLAHLSHELRTPLTSILGYTELLMDSKIG--QSAQSE 184

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  +  +S  LL+L+N++LDL+ + A  ++LN S + L+ L+ +V   +     +  + 
Sbjct: 185 -LSIVLNNSKHLLSLLNNMLDLSKIAADKLELNLSEVNLDALIADVYALMNIPATDKGLT 243

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFI-FSVK 724
           + VISD  L      D  R  Q+   ++SNA+ F+ +GS  +     D    +F+ FSV 
Sbjct: 244 LSVISDTPLPLKITTDATRFRQVLINLISNAIKFTEQGSVTLRLWCEDKPGCEFLHFSVT 303

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           + G  IP +   SVF  F   A    RR  G GLGL+I    +   GG VS+ S+
Sbjct: 304 DTGIGIPANQLNSVFKPFEQVADVVSRRQGGSGLGLAICNELVAKMGGEVSLHST 358


>gi|294644343|ref|ZP_06722109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810705|ref|ZP_06769353.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292640313|gb|EFF58565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442038|gb|EFG10857.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 744

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 138/272 (50%), Gaps = 12/272 (4%)

Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Y+   LP  +  T    +N+ D    E  L E    L +  E+K SF+ ++S+E+R+P
Sbjct: 478 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTP 536

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +I+GF ++L     G  + ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++ 
Sbjct: 537 LNSIVGFANILALED-GLSSVEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 595

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + +L++++  +    +  +   +K + D  L     DR+RL+Q+ +  L+NA  F+ 
Sbjct: 596 RCKVRELIDDIYMTHQVLIAPHLEFLKEVDDTPL-EINVDRERLIQVLTNFLNNACKFTE 654

Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            G   +      D G+    V+++G  IP +  + +F+RF       Q  G GLGLSI +
Sbjct: 655 TGYIKLGYSYLPDEGNVQIYVEDSGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQ 712

Query: 763 SFINLHGGHVSISS----SDEGVTTINCRIPS 790
             I   GG + + S           + CR+ S
Sbjct: 713 VIIEKLGGKIELKSEVGKGSRFTVILPCRVVS 744


>gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
 gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
          Length = 932

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  +   A D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1290

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 131/270 (48%), Gaps = 19/270 (7%)

Query: 534  PNAQTMLTFVN-VTDSVRAERALTEKNEALRKA----------DEIKNSFVQHVSYELRS 582
            P+ + +  F+  +TD  RAE+   E+   L +           + +K+ F+  VS+ELRS
Sbjct: 879  PSPEGITIFITEITDRKRAEQ---EREHLLAREQAARAEAERANRVKDEFLAIVSHELRS 935

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL  I+G++ LL+T KL    +K +Q +  I+ ++ +   L+ D+LDL+ +  G + LN 
Sbjct: 936  PLNPILGWSTLLQTQKLNP--AKTAQALNAIARNARLQAELIEDLLDLSRILRGKLSLNV 993

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                L   +    +++       +I+I  + +  +G  + D  RL Q+   +LSNA+ F+
Sbjct: 994  FPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDSSRLQQVMWNLLSNAIKFT 1053

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
             +G  V ++  R        V + G  I  D    +F  F        R+  G+GLGL+I
Sbjct: 1054 PEGGLVDIQLERCGAQAQIIVSDTGKGIDPDFLPYIFEYFRQENSATTRKFGGLGLGLAI 1113

Query: 761  VESFINLHGGHVSISSSDEGV-TTINCRIP 789
            V   + LHGG V   S  EG   T   ++P
Sbjct: 1114 VHHLVELHGGTVEAESLGEGQGATFTVKLP 1143



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 6/235 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + E L + D  K  F  +VS+E R+PLT ++G    ++ +   + +++Q   +E I  ++
Sbjct: 344 RAEQLAELDRAKTVFFSNVSHEFRTPLTLMLG---PVEEALQATQDAQQRDRLELIHRNA 400

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  LVN +LD + ++AG ++  Y    L  L  ++     + +    + ++V      
Sbjct: 401 LRLQKLVNTLLDFSRIEAGRIEAVYQPTDLAMLTTDLAGVFESAIARAGLHLRVDCPPLP 460

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR+   +I   +LSNA  ++ +G   ++  +R N      V++ G  IP +    
Sbjct: 461 EPTYVDREMWEKIVLNLLSNAFKYTFEGEIAVILRSR-NEQIELEVRDTGIGIPAEELPQ 519

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F RF  V  A      G G+GLS+V+  + LH G +S SS  +  T+    IP+
Sbjct: 520 IFERFHRVQGARGRTYEGSGIGLSLVQELVRLHDGTISASSIVDQGTSFIVSIPT 574


>gi|291541287|emb|CBL14398.1| EDD domain protein, DegV family [Roseburia intestinalis XB6B4]
          Length = 891

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 142/259 (54%), Gaps = 13/259 (5%)

Query: 542 FVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           F+ +T S   +R   EK +A L  A   ++ F+ ++S+E+R+P+  IIG  ++  T +  
Sbjct: 179 FIQITLS-EYQRKENEKQQAELVAAMNTQSRFLANMSHEIRTPINTIIGLNEM--TLREE 235

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+    +    I ++S +LL+L+NDILDL+ ++AG M++  +     +L +E+  +   
Sbjct: 236 NLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGELFSEIVNTTWI 295

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718
           + HE N+   V    KL S +  D  R+ Q+ + ILSNA+ ++ KGS T+ +++ +   D
Sbjct: 296 RAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTLFVESEQTGAD 355

Query: 719 FIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHV 772
            I    +V + G  I +D  K +F+ F    + G  +G+   GLGLSI    +NL GG +
Sbjct: 356 EILLKMAVIDTGMGIRQDDMKYLFDSF-KRVNEGSTKGIEGTGLGLSICSQLVNLMGGQI 414

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S  +  +T    IP K
Sbjct: 415 TVDSIYQKGSTFTITIPQK 433


>gi|126661522|ref|ZP_01732570.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126617188|gb|EAZ88009.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 611

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 171/363 (47%), Gaps = 52/363 (14%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFA----AIITSFDDERKSLQGTLELLSDSVL--E 527
           + P T+  +IAA    Y   +D  +L+      II +   E  S+       SD ++  E
Sbjct: 17  IDPETNPEDIAAVYHNYIAGTD--ELYPNEKLPIIKALQGEVTSVDDLEIHQSDRIILIE 74

Query: 528 YSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRK------------------ 564
               P+ N        ++ F ++T+  RAE+ L +  + L +                  
Sbjct: 75  SRGTPIYNEAGEVEYALVAFQDITEHKRAEKILADYYQELEQEVKRQTEELEIAKEKAEV 134

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+E K++F+ ++S+ELR+PL  I+GF+ ++K S   +L+ ++ + +  I  S   LL L+
Sbjct: 135 ANEAKSAFIANMSHELRTPLNAILGFSQIMKRS--STLSQEEKENINIIGRSGDYLLTLI 192

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           N+ILDLA ++AG M LN     L   L EV+  +  K +   +++++  D  +  ++  D
Sbjct: 193 NNILDLAKIEAGKMTLNPCDFDLYSCLQEVEDLLHLKANNKGLKLEINHDQDVPQYINTD 252

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL----------------KAARDNGDFI-FSVKNN 726
             +L Q+   +++NA+ F+S+G   +                   +  N D+I  +V++ 
Sbjct: 253 ETKLRQVLINLINNAIKFTSEGGVFVQVRNQPSDIKDSNLNNDSKSLTNNDYINITVQDT 312

Query: 727 GSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  I       +F  F  + + +    G GLGL+I   F+ L GG +++++  E  TT +
Sbjct: 313 GVGIAAGELDKLFEAFAQTESGKKSSEGTGLGLAISRKFVQLMGGDITVTTEVESGTTFS 372

Query: 786 CRI 788
             I
Sbjct: 373 FNI 375


>gi|88859263|ref|ZP_01133903.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
 gi|88818280|gb|EAR28095.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
          Length = 884

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 130/233 (55%), Gaps = 15/233 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           TEK E   +A E K+ F+ ++S+E+R+P+  I G  DL   ++L     +Q  +++  + 
Sbjct: 371 TEKAE---QATEFKSIFLANMSHEIRTPINGISGLIDLCLATEL---THRQRDFLDKAAY 424

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
           S+ +L++LVNDILD + ++AG + + Y    L  +++ +  +IA + +E N+ +   I+ 
Sbjct: 425 STNLLMSLVNDILDFSKIEAGKLSIEYIQFSLEAIIDNLIANIAPRSYEKNLHLNCEIAP 484

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG---DFIFSVKNNGS 728
                F+ D  R+ QI   + +NA+ F+S GS   TV+ +A  +N      I SV + G 
Sbjct: 485 NLPRLFMGDPLRVNQILFNLCTNAVKFTSIGSITITVLFEAIPNNDKQIKLILSVSDTGV 544

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            + E    ++FN F+       R+  G GLGLSIV+  + L GG +S++S+ +
Sbjct: 545 GLTEQQIDNIFNAFIQADGSISRKYGGTGLGLSIVKQLVKLMGGEISVNSTPD 597


>gi|84514941|ref|ZP_01002304.1| hypothetical protein SKA53_11993 [Loktanella vestfoldensis SKA53]
 gi|84511100|gb|EAQ07554.1| hypothetical protein SKA53_11993 [Loktanella vestfoldensis SKA53]
          Length = 517

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 179/402 (44%), Gaps = 39/402 (9%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVF 233
           A       + +  +++ + +      L+W  D  G + W+N ++     K +   + +V 
Sbjct: 134 APVPFATSQQAGELALLRDVLRHTPQLIWRTDGDGKVTWSNQAHADFWAKHDMTHDEMVA 193

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
           Q++  E+        ++    ++  E N    V +++ G +        L+   +  IA+
Sbjct: 194 QRSAFEAGA--TNGTRRIAFPTAGKETNQWFDVLSVQQGGS-------TLHFATDTSIAV 244

Query: 294 DVSKEITVNDQ-LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
              ++     Q L  T+     L++ +AIFD+ R L   N + +++  +   FL+T P+ 
Sbjct: 245 RADQDRQSFVQTLGKTFA---ELSIGLAIFDKQRRLVTFNPALLDMTRLGFEFLSTRPTI 301

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRG 410
           D +L+ LR    LPE  ++ +W++   +V  +++  T+++ W+LP+GQ   V    +P G
Sbjct: 302 DTVLDRLRETRILPEPKDYASWRDQFTAVEAAAKNGTYREMWNLPDGQAFRVTGRPHPNG 361

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
              ++FE++T  + L  ++ + ++     +D LS+G+AVF   G + + N A+ SLW   
Sbjct: 362 AFAFLFEDVTADLSLTRRFRSDIETGQAVLDALSDGIAVFTVAGTLVMYNRAYASLWGMV 421

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDS---- 524
            +   PG   R   +  +R       W  + A  T + D    +   G  E  SD     
Sbjct: 422 AD---PGLEHRAATSEIAR-------WHAYCAPTTDWTDLHHFIHQAGPRETWSDDALLA 471

Query: 525 ---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
              +L     P+    TM+ F      +   R LT+ + A+R
Sbjct: 472 DGRMLRCQATPIAGGMTMVRFSLAPRHLPVLRKLTQTDPAIR 513


>gi|294852917|ref|ZP_06793590.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL
            07-0026]
 gi|294821506|gb|EFG38505.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL
            07-0026]
          Length = 1035

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 170/371 (45%), Gaps = 56/371 (15%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISS 776
              +    +I S
Sbjct: 1005 EANRAQFAIDS 1015


>gi|189468086|ref|ZP_03016871.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
 gi|189436350|gb|EDV05335.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
          Length = 928

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 129/235 (54%), Gaps = 10/235 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E+ L E  E   +AD +K++F+ ++S+E+R+PL  I+GF+ LL  ++     
Sbjct: 687 DITELKETEQKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVETEDP--- 743

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y + +  ++ +LL L++DILDL+ ++AG     +    +N L  ++ +S+  ++ 
Sbjct: 744 EEKLEYAKMVEENNELLLQLISDILDLSKIEAGTFDFKFRDFDINTLCGDLVRSMQLRVK 803

Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                +++I +  L     V+D  RL Q+ S  ++NA+ F++ GS  I     D+     
Sbjct: 804 PG---VELIFESTLPQCVIVSDPNRLHQVVSNFINNAIKFTTTGSIRIGYDKPDDKHLRV 860

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V + G  I  + C+ +F+RF+      Q  G GLGLSI +S I   GG + ++S
Sbjct: 861 YVTDTGIGIAPEACRKIFDRFIKLNSFVQ--GTGLGLSISKSIIEQLGGTIGVNS 913


>gi|251795843|ref|YP_003010574.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543469|gb|ACT00488.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           +E L K+ + K++F+ ++S+ELR+PL +I+  + LL  ++  +LN  +  Y + I  S T
Sbjct: 481 SEQLEKSSQYKSNFLANMSHELRTPLNSILILSQLLAENENHTLNEDEEGYAKVIHTSGT 540

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677
            LL L++DILDL+ ++AG + L    + L ++   +K +      +  +   + +++   
Sbjct: 541 DLLKLIDDILDLSKIEAGKVILTVDEVNLTEIPELMKLTFNPIAEKRGVGFAIDMAESLP 600

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             +  D QRL QI   +LSNA  F+ +GS  +     D+G    SV + G  IP+D  K 
Sbjct: 601 AVWYTDGQRLQQILKNLLSNAFKFTEQGSVRLGFDYTDDGMLAISVTDTGIGIPKDKQKL 660

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           +F  F     +  R   G GLGLSI   F+ L GG + + S+
Sbjct: 661 IFEAFQQVDGKTNRIYGGTGLGLSICNEFVKLLGGSIQLDST 702


>gi|221133435|ref|ZP_03559740.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. HTCC2999]
          Length = 1029

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 13/234 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF N+T     E+   E N++       K+ F+ ++S+E+R+P+  IIG  +LL+ +   
Sbjct: 509 TFQNITSIKETEQRANEANQS-------KSDFLANMSHEIRTPINGIIGMNELLQKT--- 558

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q++Y + I  SS  LL L+NDILD + ++AG + LN   + +++ +  + + I  
Sbjct: 559 SLTTQQTEYTQAIQRSSQALLGLINDILDFSKIEAGKLNLNVKKVAMDEFMENIYKEIQP 618

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                N+++  I    L + ++D  RL QI   + SNA+ F+  GS  I  +  D     
Sbjct: 619 LSDAKNLQLD-IQVCPLVTIMSDPMRLRQILINLCSNAIKFTEYGSIRISFSVIDEQYLR 677

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           F++ + G  IP +    +F +F  +  + +    G GLGL+I +    L GG +
Sbjct: 678 FTISDTGIGIPSEKSSQLFEKFNQLDTSSKRSIGGTGLGLTISQQLSQLLGGAI 731


>gi|67924436|ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67853725|gb|EAM49058.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1044

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 136/259 (52%), Gaps = 13/259 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+   A+ AL +  EA   A++ K+ F+  +S+E+R+P+  I+GF DLLK SK+ 
Sbjct: 687 TITDITNKKAAQEALEKAKEAAEVANKAKSEFLATMSHEIRTPMNAILGFCDLLK-SKIT 745

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + K   Y++ I     +LL+L++DILD++ ++AG + + Y  I L +++ E+++    
Sbjct: 746 --DEKSQNYLDSIDRIGKVLLSLIDDILDISKIEAGKLDITYEPIKLREIIIEIQRMFLE 803

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAAR 714
           K  E  ++I V  + ++   +  D  RL QI   ++ NA+ F+ +G   I     L   +
Sbjct: 804 KAKEKQLQILVNIEVEVPDVIVFDEIRLRQILFNLVGNAIKFTEEGLITISVKRDLLQWK 863

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           D+       ++K+ G  I  +  K VF+ F  +  +  R+  G GLGLSI E    + GG
Sbjct: 864 DDQYCSLEIAIKDTGIGIAPEQQKRVFDVFTQSEGQSNRKYGGTGLGLSITERLTKILGG 923

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S     +T     P
Sbjct: 924 TIQLESELGKGSTFTLLFP 942


>gi|302382006|ref|YP_003817829.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192634|gb|ADL00206.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 792

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 179/414 (43%), Gaps = 60/414 (14%)

Query: 419 LTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           L V +D+        ++Q       + I+ +S+   +F   GR+ L N AF+  +     
Sbjct: 381 LGVAMDITEARRARAQLQAAEGRLRDGIESVSDAFVLFDKHGRLILWNQAFKDAF----- 435

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-----LELLSDSVLE 527
                      A    R   + D  +  AA+    D  R S +G      +EL    VL+
Sbjct: 436 ---------GFADEAVRKGAQKDELNRIAALAIKAD--RPSPEGRAGAREVELYDGRVLQ 484

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK----------------------- 564
            +     +  T++T  +VT   R E       ++LRK                       
Sbjct: 485 LAERFTGDGGTVITAADVTAIRRQEVERQRSADSLRKTVDELEASQEKLSLLARKYEIAM 544

Query: 565 -----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618
                A++ K+ F+ ++S+ELR+PL  I GF++++     G L + K   Y   I  S  
Sbjct: 545 TRAEAANQAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHEKYKGYAHDILKSGQ 604

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+L+NDILD+A ++AG M L+Y  + L +L  +  + +  K  +  + +  +  G + 
Sbjct: 605 HLLSLINDILDMAKIEAGKMTLHYEAVSLTELCEDAIRLMRGKAQDCGLTLS-LEAGDVP 663

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDMCKS 737
              AD + L Q+   ++SNA+ F+ +G  + +   R N      +V + G  I       
Sbjct: 664 EIEADYRGLKQVMLNLISNAVKFTPEGGEITVSVTRQNAVTMRIAVTDTGIGIAAADLAR 723

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   F  V   H    +G GLGL++ +S I LHGG +++ S     TT++  IP
Sbjct: 724 LAQPFEQVEGQHSKTTQGTGLGLALTKSLIELHGGEMTMVSEPGEGTTVSFDIP 777


>gi|116621165|ref|YP_823321.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116224327|gb|ABJ83036.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 2384

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 19/258 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A+ AL EK E L    + K+ F+ ++S+ELR+PL N++    +L  +   +L+SKQ +Y
Sbjct: 1654 QAKAALEEKAEQLSLTSKYKSEFLANMSHELRTPLNNLLILAQMLAENAESTLSSKQVKY 1713

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             E I +S T LL L+NDILDL+ +++G M +   ++  ++L +   ++         + +
Sbjct: 1714 AETIHSSGTDLLALINDILDLSKIESGKMDVEVGSVHFSELRDLSSRTFRHVAEGKGLDL 1773

Query: 670  KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-------- 719
             +     L S   + D +RL Q+   +LSNA+ F+ +G+ V L+  R    +        
Sbjct: 1774 SIELADNLPSETIITDAKRLQQVLKNLLSNALKFTEQGA-VRLRVERATSGWSASHPVLN 1832

Query: 720  ------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                   FSV + G  IP+D  + +F  F        R+  G GLGLSI      L GG 
Sbjct: 1833 RVKSVIAFSVTDTGIGIPQDKQRIIFEAFQQADGTTSRKYGGTGLGLSISRELTRLLGGE 1892

Query: 772  VSISSSDEGVTTINCRIP 789
            + + S+    +T    +P
Sbjct: 1893 IRLQSAPGAGSTFTLYLP 1910


>gi|218259890|ref|ZP_03475422.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224855|gb|EEC97505.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
          Length = 475

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 133/226 (58%), Gaps = 15/226 (6%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ E   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ Q+VE I  +
Sbjct: 249 KQREKAEELDRLKSAFLANMSHEIRTPLNAIVGFSTLLVDT---DDPEEKKQFVEIIQKN 305

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           + +LL L++D+LDLA +++GI++L    + L +L  E+  S+  K+    + + V  D  
Sbjct: 306 NELLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVSMRIKVPA-EVALCVAPD-- 362

Query: 677 LGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           L S++   D+ RL QI S  ++NA+  +SKG+ V+    R + +  FSV + G  +  ++
Sbjct: 363 LPSYIMRCDKVRLTQIISNFINNAIKHTSKGTIVLGYEVRQD-EIEFSVTDTGDGMSPEV 421

Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSD 778
            + VF+RF    ++G   ++G GLGLSI +S I   GG + + S +
Sbjct: 422 QQHVFDRF----YKGNSFKQGTGLGLSICKSIIEQVGGKIGVESEE 463


>gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 932

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  +   A D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|329906606|ref|ZP_08274455.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547217|gb|EGF32072.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 656

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 6/212 (2%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+PL + +    LL  ++ G+LN +Q ++ E I ++   LL+L+NDILD++ V+A
Sbjct: 1   MSHELRTPLNSSLILARLLADNRSGNLNDEQIRFAETIYSAGNDLLDLINDILDISKVEA 60

Query: 636 GIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           G ++L    I L  L+  ++ +    T+  +     ++ +D    SF ADRQR+ QI   
Sbjct: 61  GKLELAPDVIPLEQLMASLRMTFEPMTRQKQLGFSAQLAADAP-ASFFADRQRVEQILKN 119

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +LSNA+ F+  G   +    + +G   F+V ++G  I  D  + +F  F        RR 
Sbjct: 120 LLSNAIKFTGTGQVGLTVCQQADGRVAFAVSDSGIGIAADQQEVIFEAFRQADGTTSRRY 179

Query: 753 -GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
            G GLGLSI      L GG ++++S + EG T
Sbjct: 180 GGTGLGLSISRDLAALLGGEITLASVAGEGST 211


>gi|300770375|ref|ZP_07080254.1| sensor histidine kinase/response regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762851|gb|EFK59668.1| sensor histidine kinase/response regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 586

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 129/245 (52%), Gaps = 9/245 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +++ L    E    A + K+ F+  +S+E+R+PL  IIG  DLLKT+KL   +  Q   +
Sbjct: 199 SQKELIASKEVAEAATKAKSKFIMTMSHEIRTPLNGIIGTIDLLKTTKL---DQNQQLLI 255

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E + ASS IL +LV D+LD++ ++    ++NY+T  LN  L  +K  +   +    +++ 
Sbjct: 256 ENLQASSHILSDLVTDLLDISRIETNKFEINYTTFNLNQSLTSLKHVVDPMLKSKGLKLN 315

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF--SVKNN 726
           +  ++      + D  R  QI   +LSNA+ F+ KG+ TV +     +  ++    VK+ 
Sbjct: 316 IRTAENTPPELITDEARFKQILLNLLSNAIKFTLKGNITVYISYILFHDKYVLECKVKDT 375

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F++F  +        +G+GLGL+I +  +++ GGH+ + S     TT 
Sbjct: 376 GIGIKKENIARLFDQFSQIEEPQIPVNKGIGLGLAICQRLLHILGGHIEVESVYGIGTTF 435

Query: 785 NCRIP 789
              +P
Sbjct: 436 TFCLP 440


>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1363

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+S R    L    +   +A  +K+ FV ++S+E+R+PL  IIG T+LL+ +    L+
Sbjct: 819  DITESRRVAEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDT---PLS 875

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q ++V+ I  SS  LL+++NDILD + ++AG M L      L  L+    + +A    
Sbjct: 876  ERQREFVQTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAAR 935

Query: 664  ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718
               I +    D  +  + + D  RL Q+   +LSNA+ F+ +G  ++     +AA    +
Sbjct: 936  GKGISLMTFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQGEVLLRVLPHRAADSEVE 995

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
             +F V++ G  I       +F  F        RR  G GLGL+I ++ + L GG +
Sbjct: 996  LLFEVRDTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTI 1051


>gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 985

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E   A  KA+E K+ F+ ++S+E+R+P+  +IG +DLL  +   SL+ +Q +YVE I +S
Sbjct: 316 EMARAASKANEAKSQFLANMSHEVRTPMNGVIGMSDLLLDT---SLDPEQRKYVETIISS 372

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL+++NDILD + ++A  + L+     L +LL +V   +  +  +  + + +++   
Sbjct: 373 GKNLLSIINDILDFSKIEANRLDLDVVDFDLLELLEDVCGILGLQAQQKGLELTLVTGSF 432

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIP 731
           L  F+  D+ R+ QI   ++ NA+ F+  G  V+   A++  D   +    V++ G  IP
Sbjct: 433 LPRFLRGDQARIRQILVNLVGNAVKFTHSGEVVVCAMAQEERDSQVTIRLLVRDTGIGIP 492

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            +M K+VF  F+      +R+  G GLGL+I        G  + + S++
Sbjct: 493 REMMKAVFEPFIQADGSTRRKYGGTGLGLAISNQLAKKMGSTIILESTN 541


>gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
 gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
          Length = 897

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L+S Q  Y+  I  S+  LL
Sbjct: 254 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTR----LSSSQHDYLLTIEKSANNLL 309

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
            ++NDILD + ++AG + L        + L+EV + +A   HE  + + +  D ++    
Sbjct: 310 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDHRIPAGL 369

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARD-NGDFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ NA+ F+ +G+   +V LKA++D N +  F+V++ G  I E    
Sbjct: 370 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKASKDENIELQFTVRDTGIGISERQQA 429

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S++S
Sbjct: 430 QLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTS 471


>gi|313113963|ref|ZP_07799519.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623726|gb|EFQ07125.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 982

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 144/266 (54%), Gaps = 19/266 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   + T   +  +AL++   A   A+  K++F+ ++S+++R+P+  IIGFT L     
Sbjct: 442 ILVLSDRTADRQVNQALSDAVAAAETANRAKSTFLSNMSHDIRTPMNAIIGFTTL----A 497

Query: 599 LGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           L +++ K     Y+    ASS  LL+L+ND+LD++ +++G + L    + L+D+L+++K 
Sbjct: 498 LSNIDDKNRVKDYLAKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKT 557

Query: 657 SIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---- 711
            ++ +++   + + + + D        D+ RL Q+   +LSNA+ F+  G TV ++    
Sbjct: 558 IVSGQIYAKQLELYMDAMDVTDEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRVRQL 617

Query: 712 --AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFI 765
             A R  G + F VK+NG  + ++  K +F  F     S   R Q  G GLG++I ++ +
Sbjct: 618 AGAVRGCGQYEFRVKDNGIGMSQEFAKKIFEPFERERTSTVSRIQ--GTGLGMAITKNIV 675

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ GG + + ++    +    R+P +
Sbjct: 676 DMMGGTIEVQTAQGKGSEFIIRVPMR 701


>gi|301309710|ref|ZP_07215649.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831284|gb|EFK61915.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 522

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 157/327 (48%), Gaps = 40/327 (12%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536
           F  I+   D ER  +QG  ++++  + EYSI                  P         A
Sbjct: 194 FCEIVHPEDRERVLVQGFEKIVTGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 253

Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586
           + +   +++TD +         ER    K   L KA E   +K+ F+ ++S+E+R+PL  
Sbjct: 254 KILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAKEANRLKSMFLANMSHEIRTPLNA 313

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF ++L          ++  YV+ I  +S +LL L+ DILD + ++AG   +      
Sbjct: 314 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 372

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++  E     A K+ + N+R       +  +  +D +R++Q+ S  L+NA+ F+S+G 
Sbjct: 373 FKEICEETYAVHALKIPK-NVRFVFDQGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 431

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFI 765
            + L     N +   SV + G  I E+ C+++F+RFV  NA    ++G GLGL+I ++ I
Sbjct: 432 -IKLAYKVSNDEIRVSVSDTGMGISEEDCRTIFDRFVKLNAC---KQGTGLGLAICKNII 487

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
              GG + + S+    +T    +P KE
Sbjct: 488 EKLGGRIGVESTLGVGSTFWFTLPLKE 514


>gi|150021705|ref|YP_001307059.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
 gi|149794226|gb|ABR31674.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
          Length = 423

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 169/355 (47%), Gaps = 41/355 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++++ + + +   DG I  +N   R++ +       PG   R +      YY        
Sbjct: 83  LNNIVDPIIISKKDGTITFANMEARNITR-------PGVEGRKLYEVFEDYY-------- 127

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERALT 556
              +     ++++   G + L  +   +Y    I+P+   Q    ++ +   V  ER L 
Sbjct: 128 VNQMFEEAQNKKEITSGEINLFVNGEKKYYELKIVPVTLEQNNERYIIILHDVTQERIL- 186

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYIS 614
              E  RK       F+ +VS+ELR+PLT+I G+ + L      +L+ K+   +++  I 
Sbjct: 187 ---ENARK------EFISNVSHELRTPLTSIHGYAEALLED---NLDDKELIRRFLTIIE 234

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + +  +  L+ND+LDL  +++G  +  +  I   ++L  V+  I     + N+ ++ +S 
Sbjct: 235 SEAARMTRLINDLLDLEKLESGNTQFIFEKINFTEILEHVRNIIEPLTKDYNVDVEFVSP 294

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSS---KGS-TVILKAARDNGDFIFSVKNNGSSI 730
            K+   + D+ RL Q+   ++ NA+ ++S   KG   V+++A +DN      VK+ G  I
Sbjct: 295 DKI-ELIGDKDRLTQMVLNLVDNAVKYTSLKEKGEKKVLVEAYKDNNHVKLIVKDTGVGI 353

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           PE   K +F RF  V  A   +  G GLGLSIV++ +  H G +  +S  EGV T
Sbjct: 354 PEKAQKKLFERFYRVDKARSRKMGGTGLGLSIVKTIVEKHNGTIEFTSK-EGVGT 407


>gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114]
 gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system
           with GacA [Vibrio fischeri ES114]
          Length = 931

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKTS    L+  Q  Y++ I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTS----LSENQQDYLQTIERSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
            ++NDILD + ++AG + L        D L+EV   +A   HE  + I +  D ++ S  
Sbjct: 340 TIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ NA+ F+ KG+   +V LK   D+  D  F V++ G  I E    
Sbjct: 400 IGDPLRIQQVLNNLVGNAIKFTEKGNIDISVELKHLTDDYVDLQFVVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  I+  GG + +SS
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSS 501


>gi|254708265|ref|ZP_05170093.1| sensory box histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261315765|ref|ZP_05954962.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M163/99/10]
 gi|261304791|gb|EEY08288.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M163/99/10]
          Length = 1035

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 667  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 704

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 705  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 764

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 765  FCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADE 824

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 825  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 884

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 885  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTALGGQVIVSTSYEL 944

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 945  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1004

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1005 EANRAQFAIDSNPGQGTVVEIVFPP 1029


>gi|224540211|ref|ZP_03680750.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518173|gb|EEF87278.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 130/240 (54%), Gaps = 8/240 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +LT  +VT+    +R L  + +    A+ +K++F+ ++S+E+R+PL  I+GF+ L+ T+ 
Sbjct: 140 VLTVYDVTELQNVQRLLNIERKNSISAERLKSTFIANISHEVRTPLNAIVGFSGLIATA- 198

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S   ++  Y++ IS ++  LL L+NDI DL+ ++AG +   YS    NDLL E++   
Sbjct: 199 --SDEEEKKLYMDIISENNERLLRLINDIFDLSQIEAGTLNFEYSEFDANDLLRELEGMF 256

Query: 659 ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             K+  NN  + +I +  + S +  ++RQR++Q+ + ++ NA+ F+  G           
Sbjct: 257 KVKLF-NNPSVDLICEDSVQSIIMYSERQRIIQVMANLIHNAIKFTKSGKIRFSCRMEGT 315

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  F V + G  IP++  + +F+ F       +  G GLGL++ +  I   GG   + S
Sbjct: 316 DEVYFYVSDTGIGIPKEEQQEIFSSF--KKLDREVPGTGLGLTLSQIIIQNLGGRAGLES 373


>gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
 gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
          Length = 932

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  +   A D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|299133557|ref|ZP_07026751.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591393|gb|EFI51594.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 812

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 133/243 (54%), Gaps = 7/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-Y 609
           A++   EK  A  +A++ K+ F+ ++S+ELR+PL  IIGF++++     G L S + Q Y
Sbjct: 518 AQKYAEEKRRA-EEANQTKSKFLANMSHELRTPLNAIIGFSEVMGRGMFGPLGSGRYQEY 576

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S   LL+++ND+LD++ ++AG MKL+   + L + ++E  +  ++      + +
Sbjct: 577 CQDILTSGNYLLDVINDVLDMSKIEAGRMKLDPEKLDLAETVSESTRVASSWADGKRLTL 636

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGS 728
               DG +   VADR+ + QI   +LSNA+ F+  G  ++++ +R  GD +  ++ + G 
Sbjct: 637 DSRIDGAI-PIVADRRAMKQILVNLLSNAVKFTPDGGRIVVR-SRIIGDRVMVTIADTGI 694

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP++    +   F  V +       G GLGL+I +S + LH G + + S     T +  
Sbjct: 695 GIPKEALARLGCPFEQVESQLTKSYHGSGLGLAIAKSLVQLHSGSMKLRSQLHIGTVVRI 754

Query: 787 RIP 789
            +P
Sbjct: 755 NLP 757


>gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 589

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 179/356 (50%), Gaps = 36/356 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498
           +++GV     DG I ++NP    F   W  E+N  +  G ++              +  +
Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNIKEGDNL------------PPEAKE 309

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           LF   +++  ++ + ++ TL+  S  +L   + PL  A++     +V  +V   R +TE+
Sbjct: 310 LFQNAVST--EKEQMIEMTLQGRSWVLL---MSPL-YAES-----HVRGAVAVLRDMTEE 358

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
               R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S    + +  + I   S 
Sbjct: 359 ----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEDRKEIAQIIYDESL 413

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  LVND+LDLA +++G   L+Y  + +N+ L ++ +  +    E NI +         
Sbjct: 414 RMGRLVNDLLDLARMESGHTGLHYEKVNVNEFLEKIIRKFSGVAKEKNITLHQDISLTEE 473

Query: 679 SFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            F+ D  ++ Q+F+ ++ NA+   SS+GS  I   +  +G     +K++GS IPE+    
Sbjct: 474 EFMFDEDKMEQVFTNLIDNALRHTSSEGSVSIAVHSVKDG-LKIDIKDSGSGIPEEDLPF 532

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RF     A    R G GLGL+IV++ +  H G +++ S  +  TT    IP+K
Sbjct: 533 IFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRMDKGTTFTFYIPTK 588


>gi|17228473|ref|NP_485021.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130324|dbj|BAB72935.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1186

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+ IK+ F+  +S+ELRSPL  I+G++ +L++ +L    +K  Q +E I  ++ +   L+
Sbjct: 812  ANRIKDEFLAVLSHELRSPLNPILGWSRILRSKQLSP--TKVEQALETIERNAKLQAQLI 869

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
             D+LD++ +  G M LN +++ L   +    +++       NI I+        + V D+
Sbjct: 870  EDLLDVSRILQGKMTLNVASVNLAATIAAALETVQLAAEAKNIHIQTTLKPISATVVGDQ 929

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
             RL Q+   +LSNA+ F+  G  + ++  + N      VK++G  I  +    VF  F  
Sbjct: 930  NRLQQVVWNLLSNAVKFTPSGGQIEVQLEQVNLYAQIQVKDSGKGIAREFLPYVFEYFRQ 989

Query: 745  --NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
               A   Q  G+GLGL+IV  F  LHGG V +SS  + +  T   R+P
Sbjct: 990  EDGATTRQFGGLGLGLAIVRHFTELHGGTVQVSSLGQDLGATFTVRLP 1037


>gi|83955168|ref|ZP_00963824.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840497|gb|EAP79670.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 550

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 156/337 (46%), Gaps = 43/337 (12%)

Query: 467 WKTEENRLSPGTHIRNIAA---------TCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           W T   R   G  +R++AA          C R  +  D +  F+A I+       + +G+
Sbjct: 228 WST---RPKNGQTVRDMAAERGCEDVLDACLRMMDIGDTYMTFSATISG-----TNFEGS 279

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           ++ L+   ++         + ++   +VT+ +  ER              ++  F+  VS
Sbjct: 280 IKWLNKGTVD--------GRLLIMLHDVTERLEQER--------------LQADFISMVS 317

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELRSPLT+I G   LL +   G L  K    +E    ++  L+ ++NDILD+  + +G 
Sbjct: 318 HELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAHRNADRLVLIINDILDMEKISSGR 377

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +     T  L++L+ E  ++ AT      ++IK            D  R++Q+ + ++SN
Sbjct: 378 LDFELETADLSELVAESLRANATAHQRFGLQIKCHGVDTPTYIETDANRIIQVLTNLMSN 437

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGV 754
           A  FS  G TV +   +   +   SV++ G  I PED  K +F RF  ++N+ R  + G 
Sbjct: 438 AAKFSKPGGTVEISVEKTPENVCVSVRDEGMGIAPEDQHK-IFQRFADMANSDRATKGGT 496

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGLSI ++ +   GG +   S +   TT    +P K
Sbjct: 497 GLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLPVK 533


>gi|229121553|ref|ZP_04250780.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201]
 gi|228662017|gb|EEL17630.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201]
          Length = 417

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 185 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 243

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 244 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 302

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++G  I
Sbjct: 303 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 359

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 360 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 416


>gi|295400135|ref|ZP_06810115.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977914|gb|EFG53512.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 376

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 119/208 (57%), Gaps = 9/208 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            +  +S+ELR+PL  I+GF  LL+  +  SLNS+Q ++V+ I   +  LLNLVN++LD+A
Sbjct: 16  LISRMSHELRTPLNGILGFAQLLEMDE--SLNSQQQEFVQAILNGARHLLNLVNEMLDIA 73

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQ 689
            ++ G ++L Y  I L  +++E  + I     + N  IK+++  +L  +    D  RL Q
Sbjct: 74  RIETGEIQLAYDLIKLGSVIDESVKLIEPLAGKRN--IKIVNQTQLDKYYVYTDSTRLRQ 131

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           I   +L NA+ ++    TV L +  + G+    +K++G  IP++  +++F  F     +G
Sbjct: 132 ILLNLLDNAVKYNRDNGTVTLTSRSEGGNICIHIKDSGIGIPKNEYENIFAPFYR--IKG 189

Query: 750 QR-RGVGLGLSIVESFINLHGGHVSISS 776
            +  G G+GLS+V+  I L GG + + S
Sbjct: 190 TKVDGTGMGLSLVKQLIQLMGGTIGVES 217


>gi|256840639|ref|ZP_05546147.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737911|gb|EEU51237.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 524

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 42/328 (12%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536
           F  I+   D ER  +QG  ++++  + EYSI                  P         A
Sbjct: 196 FCEIVHPEDRERVLVQGFEKIVTGEIGEYSIQYRLLFEGQYVWVRAYAYPYKYDEAGRPA 255

Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586
           + +   +++TD +        AER    K   L KA E   +K+ F+ ++S+E+R+PL  
Sbjct: 256 KILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNA 315

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF ++L          ++  YV+ I  +S +LL L+ DILD + ++AG   +      
Sbjct: 316 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 374

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++  E     A K+ + N+R       +  +  +D +R++Q+ S  L+NA+ F+S+G 
Sbjct: 375 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 433

Query: 707 -TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764
             +  K ++D  +   SV + G  I E+ C+++F+RFV  NA    ++G GLGL+I ++ 
Sbjct: 434 IKLAYKVSKD--EIRVSVSDTGMGISEEDCRTIFDRFVKLNAC---KQGTGLGLAICKNI 488

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           I   GG + + S+    +T    +P KE
Sbjct: 489 IEKLGGRIGVESTLGVGSTFWFTLPLKE 516


>gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 1800

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 129/263 (49%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1312 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1371

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  + + 
Sbjct: 1372 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1431

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715
            V +S     +   D QRLLQ+   +LSNA+ F+  GS  ++++ ARD             
Sbjct: 1432 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLEA 1491

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1492 GSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1551

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1552 LLGGEIHAQSEPGRGSTFTLYLP 1574


>gi|254472519|ref|ZP_05085919.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
 gi|211958802|gb|EEA94002.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
          Length = 729

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 134/258 (51%), Gaps = 28/258 (10%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P  Q +LT  +VTD   AE+ L    +    A E K+ F+  VS+E+R+PL  ++G  DL
Sbjct: 196 PIIQWILT--DVTDRRHAEQKLRADRDHAANASEAKSRFLAMVSHEIRTPLNGVLGMADL 253

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +   S  ++Q  Y+  I  S + LL L++++LD + ++AG ++L    + L  L+  
Sbjct: 254 LDDT---STTAEQQNYINAIKTSGSTLLMLIDEVLDYSKIEAGKLELETGAVELTPLVER 310

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVA---------DRQRLLQIFSKILSNAMDFSSK 704
           V + ++ K H   ++I        GS++A         D  RL Q+   ++ NA+ F+ +
Sbjct: 311 VVELLSPKAHAKGLQI--------GSYIAPEVPETIQSDPARLQQVLYNLVGNAIKFTEQ 362

Query: 705 GS-TVILKAARDN-GDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           G  +++L+ ++D+ G+ +  F+VK+ G  + E     +F  F    +   R+  G GLGL
Sbjct: 363 GGVSLVLQVSQDSAGNHLLEFAVKDTGPGMDEVTAARIFREFEQGEYGRDRKFDGAGLGL 422

Query: 759 SIVESFINLHGGHVSISS 776
           +I +    L G  +++ S
Sbjct: 423 AISKRLAELMGSSLTVQS 440


>gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
           10329]
          Length = 932

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  +   A D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|255535913|ref|YP_003096284.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
 gi|255342109|gb|ACU08222.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
          Length = 1298

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 133/246 (54%), Gaps = 10/246 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +++  N+T+ VR    L    +   +A + K+ F+ ++S+E+R+PL  +IGF+DLL  + 
Sbjct: 641 IVSVQNITERVRTTVELKNAQQLAVRASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKT- 699

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN  Q+QY+ YI+ S   LL ++NDILD + +++G M+L      + D++ +V   I
Sbjct: 700 --PLNEMQTQYLNYINESGESLLTIINDILDFSKIESGKMELMIDRTPVYDMVGQVINVI 757

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
             +  + ++ + + I  G       D  R+ QI   +L NA+ F+ +G   + ++  R +
Sbjct: 758 LFQSQKKDLELLLNIEPGLPEILFLDESRVKQILINLLGNAVKFTLRGEIELKVQKLRMD 817

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            + I   F+V++ G  IP+D  K +F+ F        ++  G GLGL+I  + +   G  
Sbjct: 818 AERIALRFAVRDTGIGIPKDKQKRIFDAFTQEDSSVSKKYGGTGLGLTISNNILKYMGTS 877

Query: 772 VSISSS 777
           +S+ S+
Sbjct: 878 LSLKST 883


>gi|194365514|ref|YP_002028124.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348318|gb|ACF51441.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 1037

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 9/231 (3%)

Query: 555 LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           L  + + +R ++E+      K+ F+ ++S+ELR+PL + +    LL  +K G+L  +Q +
Sbjct: 345 LVAQGQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTEEQVK 404

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I +S+  LL L+NDILDL+ ++AG ++L    +V++ +L  ++++      +  + 
Sbjct: 405 YARAILSSNNDLLALINDILDLSRIEAGHVELADEVVVVDSVLQRLRETFEPMARQKGLA 464

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +D    +  VAD QRL QI   +L+NA+ F+  G   +   A  NG   F V + G
Sbjct: 465 LEIEADALAPTQLVADNQRLQQILKNLLANALKFTEHGKVSLHVRAGGNGRVRFDVCDTG 524

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I  +    +F  F       +RR  G GLGLSI        GG + + S
Sbjct: 525 IGIAREQLPVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIQVDS 575


>gi|332535352|ref|ZP_08411148.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035225|gb|EGI71733.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1104

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 127/243 (52%), Gaps = 14/243 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +  E+ L    E   +A E K+ F+  +S+E+R+P+  ++G  +++K ++L   + +Q  
Sbjct: 572 IETEQKLVSAKETAEQAVEAKSEFLASMSHEIRTPMNGVLGMLNIIKQTQL---DLQQKH 628

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++E   +S+  LLN++NDILD + ++AG + +      L  LL EV +S A K+ +NN  
Sbjct: 629 HIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPRLLGEVVESFALKVEQNN-- 686

Query: 669 IKVISDG---KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---S 722
            K+I D     +   ++D  RL QI + ++ NA+ F+  G  VI     +  D  F   S
Sbjct: 687 TKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTIDGEVVITARIDETTDGSFLQCS 746

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDE 779
           + + G  I      S+F+ F        R+  G GLGL+IV+    L  G VS++S   E
Sbjct: 747 IIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSVNSMQGE 806

Query: 780 GVT 782
           G T
Sbjct: 807 GST 809


>gi|67923164|ref|ZP_00516653.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67855006|gb|EAM50276.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 445

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 3/236 (1%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +N+ L+ +   K+ +  HVS+ELR+ L  I+G + +LK    G LN KQ +YV  I  S 
Sbjct: 201 ENKQLKSSKNNKSDYFSHVSHELRTTLAGILGLSKMLKQELYGPLNEKQKEYVNGIRVSG 260

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVND LDL+ ++A   +L    + + D+       I  K  E NI I +    ++
Sbjct: 261 EHLLALVNDFLDLSKIEADKEELFLENVTVEDICLATISIIQPKADEQNIDIILKVSEQV 320

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D++++ QI   ++SNA+ F+ +GS V L+  + +    F V + G  I E+  K 
Sbjct: 321 DFCTVDQRKIKQILINLMSNAIKFTEEGS-VTLQVEKVDNWLKFCVIDTGIGIKEEDQKK 379

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F  + +    Q +G GLGL++      LH G ++++S     +     +P K
Sbjct: 380 LFQPFQQIHSKLSRQHKGTGLGLALSRKLAQLHEGELTLTSEYGKGSCFTLELPLK 435


>gi|320161971|ref|YP_004175196.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319995825|dbj|BAJ64596.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1349

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 130/241 (53%), Gaps = 11/241 (4%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +A++ A+  K+ FV  V++EL++P+T++ G+T+LL    +G +N  Q+ ++  I A+   
Sbjct: 1105 QAVQNANLAKSEFVSFVAHELKNPMTSVKGYTELLAAGAVGPVNEAQANFLNTIRANIER 1164

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            +  LV+D+ DL+ ++ G ++L +  + L +++  V +S   ++ E    +++     L  
Sbjct: 1165 MNTLVSDLNDLSKIEVGRLRLEFKAVSLAEVVEGVVRSTRRQIDEKKQTLEIAIPADLPP 1224

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFS-----VKNNGSSI 730
              ADR RL Q+   ++SNA  ++ +G  +++ A R     N + +       VK++G  I
Sbjct: 1225 AWADRTRLEQVLVNLVSNAHKYTPQGGHILVAAERAKNVWNPEGVPEVIHVWVKDDGIGI 1284

Query: 731  PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             E+  K +F +F  +     R   G GLGL+I +S + + GG++   S     TT +  +
Sbjct: 1285 SEEDQKKIFQKFFRSEDPKTREVPGTGLGLNITKSLVEMQGGNIWFESEFRKGTTFHFTV 1344

Query: 789  P 789
            P
Sbjct: 1345 P 1345


>gi|313159136|gb|EFR58511.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 663

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 133/241 (55%), Gaps = 16/241 (6%)

Query: 550 RAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           R +R L E+        E   ++D +K++F+ ++S+E+R+PL  I+GF+ L++  +L   
Sbjct: 394 RLKRTLEEREGQLVIAREKAEESDMLKSAFLANMSHEIRTPLNAIVGFSSLMQGEELS-- 451

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++++Y   +  +S +LL L+NDILD+++++ G ++ NYS     +++   +  + T  
Sbjct: 452 QEERAEYCAIVVNNSEMLLTLLNDILDISSLECGKIRFNYSA---EEIVQICQHILMTTA 508

Query: 663 HENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
           H     ++   +  + S++   D  RL QI   +L+NA  F+S+GS V+ ++   +  + 
Sbjct: 509 HTCQPGVEGRLECAVDSYMLTTDVHRLSQILINLLTNAAKFTSEGSIVLGVEICPEQNEV 568

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +FSV + G  IP D  + +FNRF       +++G GLGL+I      + GG + +  +  
Sbjct: 569 LFSVTDTGPGIPLDKQEMIFNRF-EKLDGNKKKGTGLGLAICRQIAMIFGGRIWVDPTYT 627

Query: 780 G 780
           G
Sbjct: 628 G 628


>gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
 gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
          Length = 925

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+L   + +Q  Y+  I  S+
Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLTTIQKSA 329

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L      L DL+ +    +A   HE  + +   V  D 
Sbjct: 330 ESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDT 389

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            +     D QRL QI + ++ NA+ F ++G TV ++A     + D      SV++ G  +
Sbjct: 390 PI-QLQGDPQRLKQILTNLVGNAIKF-TQGGTVAVRAMLEDESDDRAQLRISVQDTGIGL 447

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            E+  +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 448 SEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496


>gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
 gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
          Length = 770

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+AL    E    A   K+ F+ ++S+E+R+P+  +IG  ++L+ +KL      Q  Y +
Sbjct: 231 EQALERAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETKL---TPDQEMYTD 287

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL ++NDIL+ + ++AG ++L  +T  L  ++ +V   +A K  E  +++ +
Sbjct: 288 TIVKSGNALLTIINDILNFSKIEAGKLELTQATFNLRTVVEDVVMLLAPKAAEKWVQLTL 347

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNG 727
             D  L  F   D  R+ QI + ++ NA+ F+S+GS  I       G   D   SV + G
Sbjct: 348 RYDPDLVEFYDGDAGRIRQIITNVVGNAVKFTSQGSVHIDVTGTSRGKEMDLRISVVDTG 407

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG---VT 782
             IP +    +F+ F  V  A      G GLGL+I    + L  G + ++SS EG   V 
Sbjct: 408 IGIPAEKLDRIFHAFEQVDGAATRSFEGTGLGLAISTRLLQLMKGRIHVTSS-EGKGSVF 466

Query: 783 TINCRIPSKE 792
           TI+  +P+ +
Sbjct: 467 TIDITLPTSD 476


>gi|218259710|ref|ZP_03475337.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224937|gb|EEC97587.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii
           DSM 18315]
          Length = 514

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 132/250 (52%), Gaps = 6/250 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ +    E  L E       AD++K+ ++  +S+E+R+PL  I GF++L+        
Sbjct: 270 INIQERKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADS 326

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++  Y E I  ++ +L+ L+NDILDL+ ++A  +K++Y  + +N+L++    SI  +M
Sbjct: 327 DEERKGYYEIIKTNNLLLMQLINDILDLSKIEADAIKISYEPVDINELMDTTFASIKLRM 386

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  +++ +        F  D  RLLQ+ + + +NA+  + +GS  +      +    F 
Sbjct: 387 PE-GVQLFLEKGSCTCRFGTDSIRLLQLINNLANNAIKNTKQGSITLGYTCLPDKHLKFY 445

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           VK+ G  I +D  +S+F RFV      +  G+GLGL+I +  +   GG + + S     +
Sbjct: 446 VKDTGIGIAKDKLESLFTRFVKVNDYVE--GIGLGLAICQGLVTKMGGSMHVESELGIGS 503

Query: 783 TINCRIPSKE 792
           T +  +PS E
Sbjct: 504 TFSFVLPSHE 513


>gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 887

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 129/257 (50%), Gaps = 3/257 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N   + +F+++++  + E  L +   A   A+   + F+  +S+ELR+PLT IIGF++L+
Sbjct: 303 NGYFVESFIDLSERKKVEEELLQAKLAAEGANRAMSEFLATMSHELRTPLTAIIGFSELM 362

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G  +    +++ +IS S   LL+L+N ++DL+ ++AG M L      L D+  + 
Sbjct: 363 LGEATGEFDELNRKFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLEPDFFSLYDIFADT 422

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           K   +    + NI +    +     + ADR R  QI   ++SNA+ F+  G +V +   R
Sbjct: 423 KSISSPLALKKNISMDFNVESDFLIY-ADRTRFKQIMYNLVSNAIKFTPAGGSVEVVGRR 481

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                  +V + G  I +D  K +F  F  ++ A   +    GLGL + ++F+ +HGG +
Sbjct: 482 SENRIRVTVSDTGIGISQDEIKHLFKPFKQINFALSREYESTGLGLVLSKNFVEMHGGRI 541

Query: 773 SISSSDEGVTTINCRIP 789
            + S     +T    +P
Sbjct: 542 WVESEPGKGSTFTFEVP 558


>gi|162453233|ref|YP_001615600.1| hypothetical protein sce4957 [Sorangium cellulosum 'So ce 56']
 gi|161163815|emb|CAN95120.1| torS [Sorangium cellulosum 'So ce 56']
          Length = 669

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 3/242 (1%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+ T  ++T  V  E  L +       A   K+ F+  +S+ELR+PL  I+GF  LL   
Sbjct: 263 TVCTLWDMTGDVHREEELRKARGIAEAASSAKSEFLASMSHELRTPLNAILGFAQLLHRD 322

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L  +Q + +E++      LL L++DILDL+ ++AG + ++   + + ++L EVK +
Sbjct: 323 RKTPLTDRQKERIEHVLKGGEHLLKLIDDILDLSRIEAGRVTVSIEPVNVPEVLIEVKTT 382

Query: 658 IATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD 715
           +        I I +     +L    ADR R  QI     SNA+ +  +G    I  +  +
Sbjct: 383 LDPMAQRAGIEIALAPLPAELPKITADRTRFAQILMNYGSNAIKYGRRGGRATIAVSMPE 442

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSI 774
           +G     V +NG  IP++    +F  F       G   G G+GL+I +    L GG V  
Sbjct: 443 DGVVKICVIDNGIGIPQEQHAKIFQPFQRAGQETGPIEGTGIGLAITKRLAELMGGGVGF 502

Query: 775 SS 776
           +S
Sbjct: 503 AS 504


>gi|126657352|ref|ZP_01728511.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126621339|gb|EAZ92051.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 764

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 131/254 (51%), Gaps = 14/254 (5%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603
           E+ + E+ + LR        A+  K+ F+ ++S+ELR+PLT IIG +  L      S N 
Sbjct: 365 EQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESSNL 424

Query: 604 --SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              KQ +Y++ I  S   LL+++N+IL+ + + +G   L      L  +   V Q ++ +
Sbjct: 425 PIDKQKKYLQTIQNSGKHLLDMINEILEYSNLQSGKYVLAVREFSLMKVAKNVIQRVSDE 484

Query: 662 MHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 N+ + +  + +  SF AD +R+ QI   +L+NA+ F+S+  TV L+  R+N   
Sbjct: 485 AEHRRINLELDLQINAQQDSFYADPERVQQILYHLLNNALKFTSENGTVTLRIWRENNQV 544

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V++ G  I E+    +F  F  + N+ R    G GLGL++ +  + LHGG + + S 
Sbjct: 545 SLEVEDTGIGIKEEQIPLLFESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVESI 604

Query: 778 DEGVTTINCRIPSK 791
               +T   R+P++
Sbjct: 605 INQGSTFIVRLPNQ 618


>gi|312194418|ref|YP_004014479.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311225754|gb|ADP78609.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 1425

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 16/257 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A   L EK E L  + + K  F+ ++S+ELR+PL +++    LL  ++  +L  +Q ++
Sbjct: 915  QARTGLEEKAEQLALSSQYKTEFLANMSHELRTPLNSLLILAKLLADNQDDNLTYQQIEF 974

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I +S + LL L+NDILDL+ V+AG M +  + +    + + + Q++        +  
Sbjct: 975  ARTIHSSGSELLMLINDILDLSKVEAGKMDVEATAVGTAAMCDALAQAVRPVAEVKGLTF 1034

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI------- 720
            +V ++D     FV D QR+ Q+   +LSNA+ F+  G+  + +  A  +G FI       
Sbjct: 1035 EVQVADDVPAEFVTDEQRIQQVLRNLLSNAVKFTDSGTVRLDVTVASSDGPFIVPSLRSA 1094

Query: 721  -----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F+V + G  I  D  + +F  F        RR  G GLGLSI +    L GG ++
Sbjct: 1095 PTVLSFAVSDTGIGIATDKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIA 1154

Query: 774  ISSSDEGVTTINCRIPS 790
            +SS     +T    +PS
Sbjct: 1155 VSSVLGQGSTFTLYVPS 1171


>gi|149280628|ref|ZP_01886742.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149228612|gb|EDM34017.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 731

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 131/245 (53%), Gaps = 12/245 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+EK    R+A  +K +F+ ++S+E+R+PL +I+GFT+LL+     + +   + Y+  I 
Sbjct: 227 LSEKRA--REALSVKENFLANMSHEIRTPLNSILGFTNLLQRR---NADGVMAHYIVSIQ 281

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL ++NDILD++ ++AG+M++      +  LL+ V+   + ++    +    + D
Sbjct: 282 QAGENLLAIINDILDISKIEAGMMRIVNKPFSIRGLLHSVEVLFSERVKSKRLGYHTLVD 341

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
           G +  + + D  RL QI   +L N + FS KG+  +    +    D+   +F V +NG  
Sbjct: 342 GDVPDTLIGDATRLTQIMVNLLGNGLKFSEKGALRVGVKCKEVWPDHVVLVFEVSDNGIG 401

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++    +F RF        R   G GLGLSIV++ +++  G +S+SS     TT    
Sbjct: 402 IEQEKLNQIFGRFNQADDSITRNYGGTGLGLSIVQNLLSIQHGDISVSSEAGKGTTFTFY 461

Query: 788 IPSKE 792
           IP ++
Sbjct: 462 IPYQK 466


>gi|300777605|ref|ZP_07087463.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
 gi|300503115|gb|EFK34255.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
          Length = 735

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K +F+ ++S+E+R+PL+ I+GFT+LL+      L+   +++V  I  S   L+ ++
Sbjct: 235 AAQTKENFLANMSHEIRTPLSGILGFTNLLQKR---PLDETSAEFVSSIQRSGENLMAII 291

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVAD 683
           NDILDL+ ++AG+M++      +N L+N V+     +  E  + I   I      + V D
Sbjct: 292 NDILDLSKIEAGMMRITPGIFSINGLVNSVETFFTERAKEKGLTISSTIEPSIPDTLVGD 351

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
             RL QI   ++ NA+ F+ +G+  +   ++   +      F + + G  I ++    +F
Sbjct: 352 ATRLTQILVNLIGNAIKFTHQGNITVEIYSKQQTEKEAVLGFKISDTGIGIDKEKLTEIF 411

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF        R   G GLGLSIV+S I L  G++ +SS     TT +  IP
Sbjct: 412 ERFNQGEDSTTRNYGGTGLGLSIVKSLILLQNGNIEVSSEPGKGTTFHFYIP 463


>gi|170743275|ref|YP_001771930.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168197549|gb|ACA19496.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1857

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 124/257 (48%), Gaps = 19/257 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ +Q ++
Sbjct: 1140 QARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLSENPDGNLSERQVEF 1199

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  + T LLNL++DILDL+ +++G + +    I   +LL    +    +     +  
Sbjct: 1200 ARTIHGAGTDLLNLISDILDLSKIESGTVSVEAEEISFANLLATTARPFRHEAENRRLSF 1259

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---------- 719
             V    +LG+ V D +RL Q+   +LSNA  F+ +G  V L+ A   G +          
Sbjct: 1260 DVEMAPELGTLVTDSKRLQQVLKNLLSNAFKFTEQGG-VRLRVAPAAGGWSADHPVLKNA 1318

Query: 720  ----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
                 F V + G  IP +  K +F  F   A  G  R   G GLGL+I     NL GG +
Sbjct: 1319 PAVVAFEVSDTGIGIPPEKQKIIFEAF-QQADAGTSRKYGGTGLGLAISRELANLLGGEI 1377

Query: 773  SISSSDEGVTTINCRIP 789
             + S+    +T    +P
Sbjct: 1378 QLRSASGVGSTFTLYLP 1394


>gi|163743847|ref|ZP_02151219.1| sensory box sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161382885|gb|EDQ07282.1| sensory box sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 842

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 16/233 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT   +A  KAD+ K  F+ ++S+E+R+P+  IIG +D+L  S    L+++Q Q V+ I 
Sbjct: 448 LTYAKQAAEKADQAKTEFLANMSHEIRTPMNGIIGMSDILAES---PLSAEQEQCVDTIR 504

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL ++NDILDL+ ++AG M+++     L   ++     +  K+ E  +       
Sbjct: 505 DSSVALLKIINDILDLSRLEAGKMEISTVDFNLRKCVDGAVDVLRPKLREKGLTFTQTFA 564

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730
            +L   V  D  RL QI   +LSNA+ F+  GS V L  +RD  D       V + G  I
Sbjct: 565 RELPEQVHGDDGRLRQILVNLLSNAVKFTQYGS-VSLHVSRDVKDPYHLFIDVVDTGIGI 623

Query: 731 PEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ED  + VF RF      +  H G   G GLGL+I        GG +S++S++
Sbjct: 624 SEDQARHVFERFSQADAATTRHYG---GTGLGLTISNILAQRMGGGISLNSNE 673


>gi|115523964|ref|YP_780875.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115517911|gb|ABJ05895.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 771

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 182/410 (44%), Gaps = 55/410 (13%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT- 478
           TV+ DL  +         + I+ + E   ++  + R+ L N  F+ L +  ++ ++PGT 
Sbjct: 367 TVEADLRLR---------DAIETIPEAFVLWDAENRLVLCNSHFQRLHQLPDSAVTPGTS 417

Query: 479 -----------HIRNIAATC----------------------SRYYNESDGWDLFAAIIT 505
                        R  +  C                      S    +  G+      IT
Sbjct: 418 YDTVIEVGSMPEARTRSPECGGAQLGARTFEAQLDNGQWLHISERRTKDGGYVAVGTDIT 477

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
              D    L     + +D  L  ++  L  +Q  L    V  +  A +   EK  A   A
Sbjct: 478 RIKDHEHKL-----IDNDLRLRATVADLKISQVKLERQAVQLADLARKYAEEKYRA-EDA 531

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLV 624
           ++ K+ F+ ++S+ELR+PL  IIGF++++ +   G L S++ Q Y   I  S   LL ++
Sbjct: 532 NQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGRLGSEKYQEYCHDILTSGHYLLEVI 591

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
           NDILD++ ++AG MKL+   +     L+E  + ++ +    N ++++ +D + G S +AD
Sbjct: 592 NDILDMSKIEAGRMKLDLEPLDFAGTLSESLRVVSGR--AENKQLELHADIEQGISVIAD 649

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           R+ + QI   +LSNA+ F+ +G  + ++        +  + + G  I     + +   F 
Sbjct: 650 RRAVKQILVNLLSNAVKFTPEGGQITVRGRARADSIVLMIADTGIGIAPQSLRKLGQPFE 709

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V +       G GLGL+I +S  NLHGG + + S     T +   +P +
Sbjct: 710 QVESQLTKSYHGSGLGLAIAKSLTNLHGGSMRLRSQLGQGTVVRLVLPRQ 759


>gi|110633906|ref|YP_674114.1| periplasmic sensor signal transduction histidine kinase
           [Mesorhizobium sp. BNC1]
 gi|110284890|gb|ABG62949.1| periplasmic sensor signal transduction histidine kinase
           [Chelativorans sp. BNC1]
          Length = 505

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 139/251 (55%), Gaps = 11/251 (4%)

Query: 536 AQTMLTFVNVTDSVRAE--RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGF 590
           A ++L+F +  +S+ AE   A    +EA  +A+E    K+ F+  +S+ELR+PL  I+GF
Sbjct: 222 AISLLSFRSENESLIAELETAKAVSDEARHRAEEANLAKSRFLASMSHELRTPLNAILGF 281

Query: 591 TDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           ++++    LG + N    +Y + +  S   LL L+N+ILDL+ ++AG  +LN   + L D
Sbjct: 282 SEVMAKEVLGPVQNVTYREYAKDVHQSGQHLLELINEILDLSRIEAGRYQLNEEPLALAD 341

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++E  + +  K+   +I++    +  L + +AD + + QI   +LSNA+ F+  G  + 
Sbjct: 342 IVHECCRMMDLKLKAKDIKLVQQFEPSLLNLMADERAVRQISLNLLSNAVKFTPSGGEIR 401

Query: 710 LKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
           ++       G +I S+ +NG  I E+    V + F   S A +   +G GLGL IV+   
Sbjct: 402 VRVGWTSGGGQYI-SICDNGPGISEEEMPLVLSAFGQGSVAIKSAEQGTGLGLPIVQGLT 460

Query: 766 NLHGGHVSISS 776
           +LHGG + + S
Sbjct: 461 HLHGGLLRLKS 471


>gi|313902163|ref|ZP_07835572.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467563|gb|EFR63068.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 522

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 163/393 (41%), Gaps = 41/393 (10%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG--THIR 481
           +L T+   L  V G     ++ GV     DGR++L+NPA R L    E  L     +  R
Sbjct: 120 ELRTEQARLATVVGA----MTSGVLFIDGDGRLRLANPAARRLLDIPEQALGRDYISVTR 175

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL---PNAQT 538
           N     +R   E     L    +   D       G     +   +  +++PL       T
Sbjct: 176 NYG--LARVIEEG----LVGGQVVEHDVTIPPDPGA----APRHVRVTVVPLGTDAGGAT 225

Query: 539 MLTFVNV---TDSVRAERALTEKN-------------EALRKADEIKNSFVQHVSYELRS 582
           +   V+V     S  A R +T                  +R+ ++I+  FV +VS+ELR+
Sbjct: 226 VPDGVDVPCEAGSNSAGRGVTAAEGKRGGVVVVLHDITEIRRLEQIRRDFVANVSHELRT 285

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  + GF + L    +    +    + + I   +  +  LV D+LDLA +++    L  
Sbjct: 286 PVAAVQGFAETLLEGVIREDPATAEHFAQVIHREAERMARLVQDLLDLARLESPEPGLQR 345

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               L D   +  +    ++    +R++V S  +     ADR RL Q+++ +L NA  ++
Sbjct: 346 ERFDLRDSAVQAAERFRPRLEAAGLRLEVQSPPEPVPVWADRHRLDQVWTNLLENARQYT 405

Query: 703 SKGSTVILKAARDNGDF----IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
             G TV +   R+        +  V++ G  IP D+   +F RF  V         G GL
Sbjct: 406 PVGGTVTVAVGREGQGHQAMAVGEVRDTGRGIPPDVLPRIFERFYRVDPGRSRAAGGTGL 465

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+IV+  I  HGG V   S     T I  RIP
Sbjct: 466 GLAIVKHIIEAHGGVVGAESQLGAGTVIRFRIP 498


>gi|258593327|emb|CBE69666.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 571

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 26/261 (9%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E N  L +A   K+ F+ ++S+ELR+PL  I+GFTDL+     G + ++  + +E I 
Sbjct: 302 LEETNRDLSRASRHKSEFLANMSHELRTPLNAILGFTDLIIDGIYGQVPNELRESMEDIR 361

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L+ND+LDL+ ++AG M+LN     L  L++ V  +  +   E  + +    +
Sbjct: 362 INGRHLLRLINDVLDLSKIEAGQMRLNLGEYSLQSLIDSVISATRSLATEKRLELVARVE 421

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------------------- 712
             L   + D +R+ Q+   ++ NA+ F+  G +V + A                      
Sbjct: 422 ADLPPALGDSKRMTQVLMNLVGNAIKFTPGGGSVNVTAKSVSSSEFQVSSSQPETRNPKP 481

Query: 713 -ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
               + DFI  SV + G  IP +  KS+F  F  V ++   +  G GLGLSI +  + +H
Sbjct: 482 ETPTSPDFIEISVADTGIGIPAEELKSIFGEFRQVDSSITREYGGSGLGLSIAKRLVEMH 541

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G +   S     +T   RIP
Sbjct: 542 RGSIWADSQVGRGSTFYVRIP 562


>gi|262381248|ref|ZP_06074386.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296425|gb|EEY84355.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 524

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 156/327 (47%), Gaps = 40/327 (12%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536
           F  I+   D ER  +QG   +++  + EYSI                  P         A
Sbjct: 196 FCEIVHPEDRERVLVQGFKRIVTGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 255

Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586
           + +   +++TD +         ER    K   L KA E   +K+ F+ ++S+E+R+PL  
Sbjct: 256 KILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAKEANRLKSMFLANMSHEIRTPLNA 315

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF ++L          ++  YV+ I  +S +LL L+ DILD + ++AG   +      
Sbjct: 316 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 374

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++  E     A K+ + N+R       +  +  +D +R++Q+ S  L+NA+ F+S+G 
Sbjct: 375 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 433

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFI 765
            + L     N +   SV + G  I +D C+++F+RFV  NA    ++G GLGL+I ++ I
Sbjct: 434 -IKLAYKVSNDEIRVSVSDTGMGISDDDCRTIFDRFVKLNAC---KQGTGLGLAICKNII 489

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
              GG + + S+    +T    +P KE
Sbjct: 490 EKLGGRIGVESTLGVGSTFWFTLPLKE 516


>gi|254424881|ref|ZP_05038599.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192370|gb|EDX87334.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 762

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 15/223 (6%)

Query: 563 RKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           RKA E +K+ F+  VS+ELR+PLT+I     LL T  LG L ++  + +     ++  L+
Sbjct: 512 RKAIERMKDEFIAVVSHELRTPLTSIHTSLKLLATGLLGQLLAEGQEMLTVADENTDRLV 571

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVN++LDL  +++G + L+       +LL+E  +S+ T   ++NIRI+  ++    S  
Sbjct: 572 RLVNNVLDLQRIESGEVTLDAQECEAAELLDEAVESVLTIAQQHNIRIEAHAESL--SIW 629

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL----------KAARDNGDFIFSVKNNGSSIP 731
           AD   +++  + +L NA+ FS  G  V L          K + D    +F V++NG  IP
Sbjct: 630 ADPDYIVRALTNLLGNAIKFSPAGEVVCLTVKAVSSSLEKPSTDQEMALFCVQDNGQGIP 689

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +   S+F RF  V ++   ++ G GLGL+I    +  HGG +
Sbjct: 690 HNKLDSIFERFQQVDSSDSRKKGGTGLGLTICRKIVEQHGGKI 732


>gi|299146861|ref|ZP_07039929.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517352|gb|EFI41233.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 621

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 139/534 (26%), Positives = 240/534 (44%), Gaps = 56/534 (10%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN-DQLTHTYEILHNLTVAIAIFDQNR 326
           T E+GN K Y I        + GI I  + +   N +++ H   I  NL V I ++D++ 
Sbjct: 104 TDENGNTKVYGIAET-----QEGIHIASAHQALQNSERILHN--IYKNLPVGIELYDKDG 156

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSS 385
            +       V+L + D+     +   D L   +     LPE++  K    EN    ++  
Sbjct: 157 QM-------VDLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYD 209

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-----LTVQVDLETKYNTLVKVQG-ET 439
            +  + ++ PN  T  + +T+  +  T++   +     L + VD         K+Q  E+
Sbjct: 210 FSKINKYYQPNSTTGFIDLTT--KVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFES 267

Query: 440 I-----DHLSEGVAVFGPDGRIKLSNPAFRSLWKT--EENRLSPGTHIRNIAATCSRYYN 492
                 D+   G A F    R      A RS ++   EE     GT +  I    S ++ 
Sbjct: 268 FFDLVGDYAKVGYAHFDALSR---DGYALRSWYRNVGEEE----GTPLPEIIGIHSHFHP 320

Query: 493 ESDG--WDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-V 543
           E      D    +I       S D   +   G       +VL  +  P  N   ML    
Sbjct: 321 EDRAVMIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQPQDNIIEMLCINF 380

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+ LL+ +      
Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEA---EDA 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y   I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ QS+  +  
Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           E  + I +  +    +F +D+ RL Q+    ++NA+ F+S+GS VI    R NG+ + FS
Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGSIVI--DYRINGNEVRFS 554

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  I  +  +++F RFV         G GLGL I +S +   GG + + S
Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPICQSIVTQLGGKIGVES 606


>gi|298242637|ref|ZP_06966444.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555691|gb|EFH89555.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 557

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 136/262 (51%), Gaps = 13/262 (4%)

Query: 541 TFVNVTDSVRAERA---------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           TF+  + S++A  A         L EKN AL +A+ +K+ F+ +V++ELR+PL +II + 
Sbjct: 277 TFLLSSASIQASMAIQNTLLFSELKEKNAALEQANHLKSQFLANVTHELRTPLHSIISYG 336

Query: 592 DLLKTSKL-GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            LL    + G L+S+Q ++++++   +  L +LV+D+LDL+ ++A  +++    + L+  
Sbjct: 337 ALLLEGYVEGELSSEQEEHIQFMVRRAEDLSHLVDDMLDLSKIEADRIEMKPEALELSVS 396

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVI 709
           L+EV   +       ++ + +  D ++   +AD  RL QI   ++SNA+ F+ KG  T+ 
Sbjct: 397 LSEVVNQLKPMALNKDLYLNLECDPQVPKVLADSHRLRQIVLNLVSNALKFTEKGGVTIH 456

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            +   +    + SV + G  I       +F  F        RR  G GLGL+I    I L
Sbjct: 457 CQHMPERAQVLISVHDTGIGISPAALGYIFEAFRQADGSTTRRFGGTGLGLTIARKLIEL 516

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG +++ S     +T    +P
Sbjct: 517 QGGEIAVESIPGRGSTFAFTLP 538


>gi|29347071|ref|NP_810574.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338969|gb|AAO76768.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 601

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 139/255 (54%), Gaps = 10/255 (3%)

Query: 524 SVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +VL  +  P  N   ML    ++T     E+ L +  E   +AD +K++F+ ++S+E+R+
Sbjct: 340 NVLVRNYRPQDNVIEMLCINFDITQLKETEQMLIKAKEKAEEADRLKSAFLANMSHEIRT 399

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ +L+ ++      ++ QY+  I  ++ +LL L++DILDL+ ++AG   +  
Sbjct: 400 PLNAIVGFSSMLEEAE---DQEEKHQYITIIEDNNKLLLQLISDILDLSKIEAGTFDIIP 456

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    L N++ Q++  K     + +++  +    +F +D+ RL Q+    ++NA+ F+
Sbjct: 457 ERVNAKQLCNDLFQAMQMKTSP-QVELRLKDNLPELTFTSDKNRLYQVLLNFVTNALKFT 515

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIV 761
           S+G+ + +    D  +  FSV++ G  I  +  +++F RFV  N+      G GLGL I 
Sbjct: 516 SEGN-ITIDYQIDGNEVKFSVQDTGMGIEPEKQEAIFTRFVKLNSFIP---GTGLGLPIC 571

Query: 762 ESFINLHGGHVSISS 776
           +S +   GG + + S
Sbjct: 572 QSIVTQLGGKIGVES 586


>gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli Kim 5]
          Length = 590

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 167/357 (46%), Gaps = 17/357 (4%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +S+G+A+   DG I++SN A   + +   + ++ G     +   C+      D  D  A 
Sbjct: 68  MSQGLAIV-QDGIIRMSNEAMADILQIPAHYIAAGQGWLGMFEFCA---ARGDFHDAAAE 123

Query: 503 IITSFDD---ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           I+  +      R+ +     +  +  +            +  F +VT+    E  L E  
Sbjct: 124 ILQEWRANIAARQPISTVFHVAGERWVNMDATVSTGQHWVALFTDVTELKSREEELRELL 183

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                AD  K+ F+ ++S+E+R+P+  ++G  +LL  +   +L+++Q  +++ I  S   
Sbjct: 184 SRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFIDIIVKSGNA 240

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-G 678
           LL ++NDILD + +DAG M L  +   + + + +V   +++   E NI +   +   L  
Sbjct: 241 LLTIINDILDFSKIDAGQMTLRKAAFDITEAVEDVATLLSSHAAEKNIELLGRAAPDLPA 300

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVK--NNGSSIPEDM 734
           + + D  R  QI + ++ NA+ F+ +G   +         G+ + +++  + G  IP + 
Sbjct: 301 AVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVVGGEIMANIRIEDTGIGIPHEK 360

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +SVF++F        RR  G GLGL+I    ++L GG++ + S     +    ++P
Sbjct: 361 LESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGKGSVFTVKLP 417


>gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 934

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 8/244 (3%)

Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER L  + EA  +A+    IK+ F+  +S+ELRSPL  I+G+  LL+T        K  Q
Sbjct: 543 ERLLQREQEAREQAESANRIKDEFLAVLSHELRSPLNPILGWAKLLQTRPFAP--EKAQQ 600

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I  ++ +   L+ D+LD++ +  G M LN   + L  ++    +++        I+
Sbjct: 601 ALQTIERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALETVQLSAEAKGIQ 660

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++      +G    D  RL QI   +LSNA+ FS  G  V ++  R   +    V++ G 
Sbjct: 661 LERHLANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGHRVDIRLERVGAEAQMQVRDTGK 720

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
            I       VF  F     R  R+  G+GLGL+IV     LHGG V   S  EG   T  
Sbjct: 721 GINPSFLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYLTELHGGTVQAESGGEGQGATFK 780

Query: 786 CRIP 789
            R+P
Sbjct: 781 VRLP 784


>gi|190890965|ref|YP_001977507.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696244|gb|ACE90329.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 513

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 5/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+V   +RAE A +   +A   A++ K+ F+  VS+ELR+PL  I+GF+D+L     G  
Sbjct: 218 VSVEQQLRAE-AQSRAADA-ESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKF 275

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N +Q +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A +
Sbjct: 276 ENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQ 335

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                + +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    
Sbjct: 336 AKTKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSIDAAARDGILKL 395

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  I  D    +   FV   +   RR  G GLGLS+V+  + LHGG+ +I+S   
Sbjct: 396 TVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIASQPG 455

Query: 780 GVTTINCRI 788
             T I   I
Sbjct: 456 EGTIITIEI 464


>gi|160886372|ref|ZP_02067375.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483]
 gi|315921766|ref|ZP_07918006.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156108257|gb|EDO10002.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483]
 gi|313695641|gb|EFS32476.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 621

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 139/534 (26%), Positives = 240/534 (44%), Gaps = 56/534 (10%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN-DQLTHTYEILHNLTVAIAIFDQNR 326
           T E+GN K Y I        + GI I  + +   N +++ H   I  NL V I ++D++ 
Sbjct: 104 TDENGNTKVYGIAET-----QEGIHIASAHQALQNSERILHN--IYKNLPVGIELYDKDG 156

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSS 385
            +       V+L + D+     +   D L   +     LPE++  K    EN    ++  
Sbjct: 157 QM-------VDLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYD 209

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-----LTVQVDLETKYNTLVKVQG-ET 439
            +  + ++ PN  T  + +T+  +  T++   +     L + VD         K+Q  E+
Sbjct: 210 FSKINKYYQPNSTTGFIDLTT--KVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFES 267

Query: 440 I-----DHLSEGVAVFGPDGRIKLSNPAFRSLWKT--EENRLSPGTHIRNIAATCSRYYN 492
                 D+   G A F    R      A RS ++   EE     GT +  I    S ++ 
Sbjct: 268 FFDLVGDYAKVGYAHFDALSR---DGYALRSWYRNVGEEE----GTPLPEIIGIHSHFHP 320

Query: 493 ESDG--WDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-V 543
           E      D    +I       S D   +   G       +VL  +  P  N   ML    
Sbjct: 321 EDRAVMIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQPQDNIIEMLCINF 380

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+ LL+ +      
Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEA---EDA 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y   I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ QS+  +  
Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           E  + I +  +    +F +D+ RL Q+    ++NA+ F+S+GS VI    R NG+ + FS
Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGSIVI--DYRINGNEVRFS 554

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  I  +  +++F RFV         G GLGL I +S +   GG + + S
Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPICQSIVTQLGGKIGVES 606


>gi|237712903|ref|ZP_04543384.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409656|ref|ZP_06086196.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294643208|ref|ZP_06721035.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807177|ref|ZP_06765993.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229447022|gb|EEO52813.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352509|gb|EEZ01609.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292641444|gb|EFF59635.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445628|gb|EFG14279.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 621

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 141/258 (54%), Gaps = 16/258 (6%)

Query: 524 SVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +VL  +  P  N   ML    ++T     ER L    E   +AD +K++F+ ++S+E+R+
Sbjct: 360 NVLVRNYQPQDNIIEMLCINFDITQLKETERMLIGAKEKAEEADRLKSAFLANMSHEIRT 419

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL+ +       ++ QYV  I  ++ +LL L++DILDL+ ++AG   +  
Sbjct: 420 PLNAIVGFSSLLEEA---EDAEEKHQYVTIIEENNKLLLQLISDILDLSKIEAGTFDVIP 476

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMD 700
             +    L NE+ Q++  K      ++K++   +L    F +++ RL Q+    ++NA+ 
Sbjct: 477 EQVNAQQLCNELFQAMQMKA---TPQVKILLAPELPELIFTSNKNRLYQVLLNFVTNALK 533

Query: 701 FSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGL 758
           F+S+GS +I    R NG+ + FSVK+ G  I  +  +++F RFV  N+      G GLGL
Sbjct: 534 FTSEGSIII--DYRINGNEVRFSVKDTGIGIAPEKQEAIFTRFVKLNSFIP---GTGLGL 588

Query: 759 SIVESFINLHGGHVSISS 776
            I +S I   GG + + S
Sbjct: 589 PICQSIITQLGGKIGVES 606


>gi|156974198|ref|YP_001445105.1| signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156525792|gb|ABU70878.1| hypothetical protein VIBHAR_01913 [Vibrio harveyi ATCC BAA-1116]
          Length = 526

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 135/251 (53%), Gaps = 16/251 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           SV+ E  L ++ EA  KA +    FV  V++ELR+PL  ++G  DLL  +    L+ +Q 
Sbjct: 147 SVQREVKLRKRAEASEKATK---EFVAMVNHELRTPLNGVLGSADLLDKT---LLDDEQQ 200

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QY+  +  S  +L  ++ND+LD + ++AG+M++        DL N +    A K  E  I
Sbjct: 201 QYLSNLIHSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRI 260

Query: 668 RIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
              +  D KLG     + D +R+ QI   ++ NA+ F++ G  V+L+    NG   F V+
Sbjct: 261 HFSI--DKKLGIPEFLIGDFERVTQILVNLIGNAIKFTNLGG-VVLRVEWQNGYANFEVE 317

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IP +  K++F+ FV  A R  +R   G GLGL+I ++ ++L GG +S +S     
Sbjct: 318 DTGIGIPLEAQKALFDPFV-QADRSTKRSFEGSGLGLAICKNLVDLMGGDISFASVPRQG 376

Query: 782 TTINCRIPSKE 792
           T    +IP K+
Sbjct: 377 TMFKLKIPLKK 387


>gi|104782259|ref|YP_608757.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95111246|emb|CAK15966.1| putative sensor histidine kinase/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 1156

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 9/234 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+  Q ++
Sbjct: 468 QAQVELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLSENAEGNLSDDQVKF 527

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I ++   LLNL+NDILD+A V+AG +++   +  L  L   ++        +  +  
Sbjct: 528 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPESTSLERLAEGLQGMFQPLAQDKGLDF 587

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +V  +  L   V  DRQRL Q+   +LSNA+ F+  G   +  + +     +F+V++ G 
Sbjct: 588 EVRLEAPLPPAVHTDRQRLEQVLKNLLSNAIKFTEHGKVSLGISHQAGLGIVFAVRDTGI 647

Query: 729 SIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            I  D  +++F  F      SN   G   G GLGLSI     +L GG +S+ SS
Sbjct: 648 GIAADQQQAIFGAFHQVDGTSNRKYG---GTGLGLSISRDLAHLLGGQISVDSS 698


>gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri]
          Length = 744

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 162/347 (46%), Gaps = 31/347 (8%)

Query: 449 VFGPDGRIKLSN---PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           ++ PDG+ ++S    P FR+L +           ++N+    +  + +     L A+   
Sbjct: 415 LYLPDGKTRMSKNEIPLFRALQEQT---------VKNVEMVIAPKHGKVK--TLLASGQA 463

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             D+E K  QG + ++ D + E  I      Q       +   V+ + A  +  EA R  
Sbjct: 464 IVDNEGKK-QGAVVVMHD-ITERKIAEAERIQL------IRQQVQEQSARLKAEEANR-- 513

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             +K+ F+  +S+ELR+PL  I+G+T LL+  KL S  +K    +E I  ++ +   L+ 
Sbjct: 514 --LKDEFLAVLSHELRTPLNPILGWTKLLRAGKLDS--AKTDYALETIERNAKLQTQLIG 569

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD++ +  G + LN + + L   ++   +++       +I+I+ + D  +G  + D  
Sbjct: 570 DLLDVSRILQGKLSLNMAAVNLAPTISAAIETVQLAAQAKSIQIETVFDPNVGQVLGDST 629

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q+   +LSNA+ F+  G  V ++    +      V + G  I  D    VF  F   
Sbjct: 630 RLQQVVWNLLSNAVKFTKNGGRVEIRLECVDSQAEIKVSDTGKGISPDFLPHVFESFRQA 689

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                R+  G+GLGL+IV   + LHGG +   S  E +  T   R+P
Sbjct: 690 DATITRKFGGLGLGLAIVRHLVELHGGTIYAESPGEDLGATFTVRLP 736


>gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
 gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
          Length = 2213

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 12/242 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
            ++TD  +AE  L         A   K+ F+ ++S+E+R+P+  IIG + L L+T     L
Sbjct: 1457 DITDRKQAEEELMRAKRVAENATRAKSDFLANMSHEIRTPMNAIIGMSHLALQTG----L 1512

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + KQ  Y+  I ++S  LL L+NDILD + V+AG M++      LND L+++ Q I  K 
Sbjct: 1513 DRKQRDYINKIQSASESLLALINDILDFSKVEAGKMEIERKPFNLNDTLDKLAQLITVKT 1572

Query: 663  HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDF 719
             E  + + + +   +    + D  RL QI   + +NA+ F+ KG  V  I K   D+   
Sbjct: 1573 REKKLELLIDTHKDVPCGLIGDSLRLGQILINLTNNAVKFTEKGEVVVSIEKVCVDDEQV 1632

Query: 720  I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F+VK+ G  + ++    +F  F        R+  G GLGL+I +    L GG +S+ 
Sbjct: 1633 TLKFTVKDTGIGMTKEQMGKLFQSFSQADASTTRKYGGTGLGLTISKKLTELMGGAISVE 1692

Query: 776  SS 777
            S+
Sbjct: 1693 ST 1694


>gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2]
 gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
 gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1]
 gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1]
 gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
          Length = 925

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+L   + +Q  Y+  I  S+
Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLTTIQKSA 329

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L      L DL+ +    +A   HE  + +   V  D 
Sbjct: 330 ESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDT 389

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            +     D QRL QI + ++ NA+ F ++G TV ++A     + D      SV++ G  +
Sbjct: 390 PI-QLQGDPQRLKQILTNLVGNAIKF-TQGGTVAVRAMLEDESDDRAQLRISVQDTGIGL 447

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            E+  +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 448 SEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496


>gi|86750547|ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris HaA2]
 gi|86573575|gb|ABD08132.1| histidine kinase [Rhodopseudomonas palustris HaA2]
          Length = 771

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 177/404 (43%), Gaps = 46/404 (11%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           TV+ DL  +         + I+ + E   ++  D R+ L N  F+ L K  +  ++PGT 
Sbjct: 370 TVEADLRLR---------DAIETIPEAFVLWDADNRLVLCNSHFQRLHKLPDIAVAPGTS 420

Query: 480 IRNIAAT----------CSRYYNESDGWDLFAAIITSFD----DERKSLQGTLELLS--- 522
              +             C      S G   F A +         ER++  G    +    
Sbjct: 421 YETVIEVGQMPEIRTRLCDNSGGSSPGARTFEAQLADGSWLHISERRTKDGGYVAVGTDI 480

Query: 523 -------------DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
                        D  L  ++  L  +Q  L    +  +  A +   EK  A  +A++ K
Sbjct: 481 TRIKAHEQKLVDNDLRLRATVADLKISQYKLERQAIELADLARKYSEEKTRA-EEANQTK 539

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDIL 628
           + F+ ++S+ELR+PL  IIGF++++ +   G+L S++ Q Y   I  S   LL ++NDIL
Sbjct: 540 SKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDIL 599

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRL 687
           D++ ++AG M+L+   + L   L E  + +A +     +  +  I D      VADR+ +
Sbjct: 600 DMSKIEAGRMRLDMEELDLARTLGESLKVVAGRAEHKQLELLSEIEDDI--PIVADRRAV 657

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            QI   +LSNA+ F+  G  V +++       +  + ++G  I     + +   F  V +
Sbjct: 658 KQILINLLSNAVKFTPDGGRVTVRSRTLPNAIVLMIADSGIGIAPQSLRRLGQPFEQVES 717

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  G GLGL+I +S   LHGG + + S+    T +   +P
Sbjct: 718 QLSKTYHGSGLGLAIAKSLTTLHGGSMRLRSTLGAGTVVMVTLP 761


>gi|254419545|ref|ZP_05033269.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196185722|gb|EDX80698.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 523

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 127/253 (50%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  V AE+AL E   A   A   K+ F+ ++S+E+R+PL  +IG  D L  +   +L+
Sbjct: 123 DVTAKVAAEKALIEAKAAAEAASRAKSDFLANMSHEVRTPLNGVIGIVDALSRT---ALD 179

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q++ V  I AS   L  LV+DILD++ ++AG + L      L++ L+     +  +  
Sbjct: 180 PAQTEMVNLIRASGVTLERLVSDILDVSKIEAGELTLETRPFDLDEALDAPLDVMRVRAD 239

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E  +R  VI D +  G FV D  R+ Q+   +LSNA+ F+ +G   +  A  ++ D    
Sbjct: 240 EKGLRFDVIRDDEARGVFVGDSTRIRQVIGNLLSNAVKFTHQGGVSVRIALDEDHDSLTH 299

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I  +++ G     +    +F+RF        RR  G GLGLSI  + + + GG ++  S
Sbjct: 300 LIVDIQDTGVGFNAEHAPRLFDRFSQADATITRRFGGTGLGLSICRALVEMMGGRITAES 359

Query: 777 SDEGVTTINCRIP 789
           +    +     IP
Sbjct: 360 TPGQGSRFRIEIP 372


>gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 686

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 7/238 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  V A R+L E       A+  K+ F+  VS+ELR+PL  I+G  DLL  +    LN
Sbjct: 153 DVTGRVEAARSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTP---LN 209

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YVE    S   LL LV+ ILD + ++AG + L      +  L+  V + +A +  
Sbjct: 210 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 269

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
           +  + I + I+D      V D  R+ QI   +  NA+ F+  G   +  A    G    F
Sbjct: 270 DKGLEIALDIADDLTALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARAGEGQREGF 329

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + ++++ G  IPE+    +F  F          G GLGL+I    +    G +   S+
Sbjct: 330 VLTIEDTGPGIPEERIPILFEEFEQGEDSASHEGTGLGLAITRRLVERMNGTIEARST 387


>gi|308272911|emb|CBX29515.1| hypothetical protein N47_J04960 [uncultured Desulfobacterium sp.]
          Length = 616

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 118/223 (52%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E+K+  +  VS++L++PLT++     LL    +G LN KQ + +      S  LLN++ND
Sbjct: 382 ELKSGMISTVSHQLKTPLTSLRMSIYLLLEESVGVLNEKQIELLIAARDDSERLLNIIND 441

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LDL  +++G   ++   +    L+ +V  S   +  +  + +       L   VAD ++
Sbjct: 442 LLDLNCIESGKSDVSLKPVSPQTLVRDVIDSFLPEARDKGVTMANAVPDDLPEVVADAEK 501

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           +  +F+ +LSNA+ F+S G +V + A  +  +  FSV++ G+ I  +  K +F  F    
Sbjct: 502 IRHVFTNLLSNAIRFTSPGGSVSVLADLEPDNVRFSVEDTGAGITAEHLKHLFEPFYRAP 561

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + ++ GVGLGL+IV+  I  HGG VS  S     T+    +P
Sbjct: 562 GQDEKSGVGLGLAIVKEIIQAHGGDVSAESEIGKGTSFGFTLP 604


>gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
          Length = 1051

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 14/233 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERA   K++A+ +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L + Q  YV
Sbjct: 381 AERA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLADT---PLTATQRDYV 433

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   ++ K  E  I + 
Sbjct: 434 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIELT 493

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
           V IS       V D  RL Q+    +SNA+ F+ +GS  +    L++        FSV++
Sbjct: 494 VSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAIIEFSVQD 553

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +G  I E   K +F  F        R+  G GLGL+I    + L GG + + S
Sbjct: 554 SGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLES 606


>gi|167647510|ref|YP_001685173.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167349940|gb|ABZ72675.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 1942

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 132/260 (50%), Gaps = 16/260 (6%)

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            T+  +A+ AL EK E L    + K+ F+ ++S+ELR+PL +++  + +L  +  G+L+ K
Sbjct: 1227 TEVEQAKAALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKMLSENAQGNLSDK 1286

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q ++ + I ++ T LL L+NDILDL+ +++G + L+   +    L ++ +++ A    + 
Sbjct: 1287 QVEFSKNIHSAGTDLLGLINDILDLSKIESGTVTLDIGEMAFTSLRDQTQRTFAQLAQDK 1346

Query: 666  NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------- 717
             I  ++  D  L  S   D +RL Q+   +LSNA  F+  GS  +  +  ++G       
Sbjct: 1347 KIDFQIDIDPALPRSMYTDDKRLQQVIKNLLSNAFKFTQVGSVRLSVSRAESGWASGNDH 1406

Query: 718  ------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                     FSV++ G  IPED  + +F  F        R+  G GLGLSI      L G
Sbjct: 1407 LNKAGQVLAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREITRLLG 1466

Query: 770  GHVSISSSDEGVTTINCRIP 789
            G + + S     +T    +P
Sbjct: 1467 GELKVVSIPGSGSTFTLYLP 1486


>gi|329923873|ref|ZP_08279236.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328941046|gb|EGG37350.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 893

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 16/245 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L +  + L K+ + K+ F+ ++S+ELR+PL +++  + +L  +K G+L  ++  Y 
Sbjct: 479 AASELEKYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQHYA 538

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S + LLNL+NDILDL+ V+AG M++    + L +L   ++   +      N+   
Sbjct: 539 TVIHNSGSELLNLINDILDLSKVEAGKMQIEMDLVNLTELPELMQGYFSKSAESKNLEFD 598

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI----- 720
           + +SD       +D  RL QI   +LSNA+ F+  GS V L+  + N     DFI     
Sbjct: 599 IEMSDDLPDMMYSDGMRLHQILRNLLSNAIKFTESGS-VKLRVKKMNSIVTSDFIISGDV 657

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV++ G  I  +  + +F  F        R+  G GLGLSI      L GG++++  
Sbjct: 658 IAFSVEDTGIGIAAEHLQPIFEAFQQGEETTARKFGGTGLGLSISLHLAKLLGGYITV-E 716

Query: 777 SDEGV 781
           S+EG+
Sbjct: 717 SEEGI 721


>gi|284050377|ref|ZP_06380587.1| multi-sensor Signal transduction histidine kinase [Arthrospira
           platensis str. Paraca]
          Length = 578

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  +++KN F+  VS+ELR+PLT I G   LL +        +  +++E     +  L+ 
Sbjct: 342 RAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIEIALLETERLVR 401

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +VNDILD+  +++G ++         +L+ +V  S+    H ++I ++++         A
Sbjct: 402 MVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITLEILPTSV--QLWA 459

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            R  +LQ  + ++ NA+ FS   +TV L A   +   +F V++ G  IP +  K++F+RF
Sbjct: 460 ARDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEKLKTIFSRF 519

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V  +   Q+ G GLGLSI +S I  HGG + + S     +T    IP
Sbjct: 520 QQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIP 568


>gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 676

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 22/241 (9%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKL 599
           +F +V+D +RA     E  EA R    +K++F+ ++S+E+R+PL  I+G + LL KT   
Sbjct: 271 SFADVSDLIRAR---VEAEEASR----MKSAFLANMSHEIRTPLNAIMGLSQLLLKTGP- 322

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              + +Q + +E + ++   LL ++ND+LD + ++ G +++    + L+ LL E+++ +A
Sbjct: 323 ---SPQQRECLETMRSAGEGLLVVLNDVLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMA 379

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ 712
               E  + + +  D KL    V D  RL QI   +LSNA+ F+  G  V+  A      
Sbjct: 380 PAADERGLTLAIERDPKLPRVAVCDPVRLKQILLNLLSNAIKFTPSGRVVLAAALPYPPK 439

Query: 713 ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769
           A D    + F V++ G  IPE++ + +F  FV   +A      G GLGLSI +  + L G
Sbjct: 440 AEDAPTPVQFRVRDTGPGIPEELRERIFEPFVQADDAVARNHGGTGLGLSISDRLVRLLG 499

Query: 770 G 770
           G
Sbjct: 500 G 500


>gi|255691863|ref|ZP_05415538.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622588|gb|EEX45459.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 888

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 194/417 (46%), Gaps = 42/417 (10%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKV 435
           N F  +  S  HKD   L    T++ ++ S+    + W F  +++ ++  E +   L ++
Sbjct: 320 NTFIAHHPSRIHKDI--LAYECTMYNVI-SDSGEESFWSFAHDISERMRYEAQIKRLNRI 376

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
              TI++L  G+ V       K  N  FR +++  E      ++ R+  +      N+ D
Sbjct: 377 MDTTINNLPAGIVV-------KEINNDFRYVYRNRE------SYNRDHFSDNPVGKNDYD 423

Query: 496 GWDLFAAIITSFDD--------------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +    A     +D              E K   G L +L    ++     L +   +  
Sbjct: 424 FYPPIVAEKKRQEDIEVAATGKGLHWIAEGKDRNGNLIILDKRKIKVDGDELSSPIIVSI 483

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T+    +R L    E    +D +K++F+ ++S+E+R+PL  I+GF+ L+  S    
Sbjct: 484 EWDITELEMIKRELQSSKEKAEMSDNLKSAFLANMSHEIRTPLNAIVGFSHLITESDDA- 542

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              ++  Y + + A++  LL L+N+ILDL+ +++G ++ ++    L++L  E+  +   +
Sbjct: 543 --EERKTYYQIVEANNERLLQLINEILDLSKIESGTIEFSFGLTSLHNLCQEIHDAHIFR 600

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDF 719
             E    +   SD  L     D+ R+ Q+ S ++ NA+ F+ +GS   +K   +  +G  
Sbjct: 601 TPEGVQLVYEPSDESL-RIETDKNRVFQVISNLIGNAVKFTKEGS---IKYGYELVDGQI 656

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +F V + G+ I  +    VF RF    +  Q  G GLGLSI +S +   GG +S+SS
Sbjct: 657 VFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--GTGLGLSICKSIVERLGGQISVSS 711


>gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 627

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 131/257 (50%), Gaps = 10/257 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T+       L    + L+ A+E K+ F+  +S+E+R+PL  I G   LL+  +   
Sbjct: 225 FEDITEQKSHVETLRSTMQQLKSANEAKSRFLAVMSHEIRTPLNGITGMVQLLRDME--- 281

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +   Q +Y+ +I +S+  LLN++NDILD + ++A  ++L         LL++  + +  +
Sbjct: 282 MPPAQREYLNFIDSSAESLLNVINDILDFSKIEAERLELELVPFQPLKLLHDTLRVMRLR 341

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
                + + ++    L    V D  RL QI + ++ NA+ F++ G  V+  ++R  GD  
Sbjct: 342 TQAKGLLLSLVCPPDLAEVLVGDPHRLTQILNNLVGNAIKFTAGGEIVVRASSRSRGDGT 401

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
             F   V+++G  + +   +++F  F+       RR  G GLGL+I +  + L  G +++
Sbjct: 402 VLFAVEVQDSGIGMDQATQQTIFEPFIQADSSTSRRFGGTGLGLAICKQLVELMHGTITV 461

Query: 775 SSSDEGVTTINCRIPSK 791
           +SS    +T    +P K
Sbjct: 462 ASSPGNGSTFCFAVPLK 478


>gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 916

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 199/423 (47%), Gaps = 50/423 (11%)

Query: 386 ETHKDTWH-LPNGQTLHVIVTSNPRGGTI-WMFENLTVQVDLETKYNTLVKVQGETID-- 441
           E  +D WH +  G+  H  V +  R G + W+   +   +D + +    + ++ E  D  
Sbjct: 199 ELFRDMWHTIVLGKVWHGEVCNRARDGHLYWVNATVVPLLDAKGEPERYIAIRTEITDRK 258

Query: 442 ----------HLSE------GVAVFGPDGR---IKLSNPAFRSLWKTEENRLSPGTHIRN 482
                     HL E       + ++  DG    I+L N AF   ++         T    
Sbjct: 259 RMEAQLSEQLHLVEELIENIPLPIYLKDGSGRYIRL-NRAFEQFFEVRREAFIGRTLHDL 317

Query: 483 IAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--- 538
           + A  +R + E D  DLFAA  T +++    S  G   +  +++   +++   +      
Sbjct: 318 LPAEDARQHAEMDA-DLFAAKGTQTYEATVHSQDG---IAHETIYRKAVLTRRDGSVSGL 373

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTS 597
           +   V++TD  RAE  +    EA   A+  K+ F+ ++S+E+R+P+  +IG TDL L+T 
Sbjct: 374 LGIIVDITDRKRAEIEVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTDLALET- 432

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L  +Q +Y+    +S+  LL ++NDILD + ++AG +++      L+ L+ +  + 
Sbjct: 433 ---ALTEEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIADTLKP 489

Query: 658 IATKMHENNIRI--KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-- 712
           +A + HE +I I   V+ D  +  FV  D  R+ Q+   ++ NA+ F+ +G  + L+A  
Sbjct: 490 LALRAHEKDIEILSDVVHD--VPRFVKGDPSRIRQVLVNLVGNAIKFTEQGE-IALQADL 546

Query: 713 -ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
               NG  +  F+V++ G  I  D    +F+ F        R+  G GLGLSI    + L
Sbjct: 547 MQLQNGHAVIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVEL 606

Query: 768 HGG 770
            GG
Sbjct: 607 MGG 609


>gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 558

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 14/244 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  +AE  L +  EA   A   K+ F+ ++S+E+R+P+  IIG  +L   + L + +
Sbjct: 151 DITDRKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVEL---ALLTASD 207

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  +Y+ +I  S   LLN++NDILD + ++AG ++L+        ++    + ++    
Sbjct: 208 VQTREYLGFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLSYMAK 267

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILK--------AAR 714
           E ++ ++   D  +   +A D+ R+ Q+ + ++ NA+ F+ +GS V+          A  
Sbjct: 268 EKDLPLRWSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTERGSVVVRVDRTEPEGLAGG 327

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           ++   +FSV++ G  IP D  + +F  F  V  +   +  G GLGLSI    + + GG +
Sbjct: 328 ESVQLLFSVRDTGIGIPADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGRI 387

Query: 773 SISS 776
            + S
Sbjct: 388 WVES 391


>gi|90423287|ref|YP_531657.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90105301|gb|ABD87338.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 612

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 5/258 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+ +    +VTD    E+AL     A  +AD  ++ F+  +S+ELR+PL  IIGF++++ 
Sbjct: 318 AEVVAVMRDVTDRKEQEQALELARAAAERADASRSHFLATMSHELRTPLNAIIGFSEMIV 377

Query: 596 TSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +  +++ ++ +Y + I+ S   LL++VN ILD++ +++G  ++          L   
Sbjct: 378 QEDVLMISAARRKEYAQLINDSGQHLLSVVNGILDMSKMESGKFEILPEPFAPRPALLNC 437

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +A K  EN + +   +   L     D +   QI   ++SNA+ F+ +G TV + AA 
Sbjct: 438 CNLLALKARENEVDLVTRAPENLPQLTGDPRAFKQIVLNLVSNAIKFTERGGTVTVSAAV 497

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +       V + G  I  D  K +   F   +    RR  G GLGLSIV+S + LHGG +
Sbjct: 498 EGARLALRVSDTGVGIGADDLKRIGEAFFQASKSYHRRHEGTGLGLSIVKSLVALHGGEM 557

Query: 773 SISSS-DEGVTTINCRIP 789
           S+ S  DEG TT+   +P
Sbjct: 558 SVESKLDEG-TTVTVMLP 574


>gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 785

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 10/241 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  +AE AL    E    A+  K+ F+ ++S+E+R+P+  ++G  DLL  S+   L
Sbjct: 382 LDITERKQAEEALRIAKENAEAANRAKSQFLANMSHEIRTPMNGVLGMLDLLMDSR---L 438

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q +       S+  LL ++NDILD + ++AG  +L+ +   L + + EV      K 
Sbjct: 439 DENQLRLASMAHGSADKLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKA 498

Query: 663 HENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717
            + NIR I  I D    +   D  RL Q+   ++ NA+ F+  G       +++   +N 
Sbjct: 499 QDKNIRLICQIDDSVPNTVRGDGVRLRQVLINLVGNAVKFTENGQIFLGVSLMETTAENT 558

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F V++ G+ IP D    +F+ F    +   RR  G GLGL+I    +   GG + + 
Sbjct: 559 QLRFEVRDTGTGIPLDAQPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVR 618

Query: 776 S 776
           S
Sbjct: 619 S 619


>gi|320167757|gb|EFW44656.1| integral membrane sensor hybrid histidine kinase [Capsaspora
           owczarzaki ATCC 30864]
          Length = 1474

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 139/254 (54%), Gaps = 26/254 (10%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +++ +N+TD  R   A   ++EAL+  +A+E K+ F+ ++S+E+R+PL  I+G T ++ T
Sbjct: 610 LVSIINLTDQRRVNAA---ESEALKEKQANEAKSRFLANMSHEVRTPLNCILGMTQIMMT 666

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYSTIVLNDLL 651
           +   SLN++QS Y++ I  S+ ILL ++NDILD + ++AG      +  N+  I  N ++
Sbjct: 667 T---SLNNEQSDYLDTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITEN-IV 722

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST--- 707
           + +  S ATK    N+ +    D +L    V D  R  QI   ++SN + F++ GS    
Sbjct: 723 DLLFPSAATK----NLLLSCFIDPQLPRVLVGDPNRFQQILVNLVSNGIKFTTSGSVSLR 778

Query: 708 VILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
            +L +  D+   +  F V + G  I  D    +F RF  V ++      G GLGL I +S
Sbjct: 779 CLLDSEVDDDHLLARFEVVDTGIGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKS 838

Query: 764 FINLHGGHVSISSS 777
            + L GG + + S+
Sbjct: 839 LVTLMGGTIGVDST 852


>gi|150006465|ref|YP_001301209.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           vulgatus ATCC 8482]
 gi|294777014|ref|ZP_06742472.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|149934889|gb|ABR41587.1| two-component system sensor histidine kinase, with a response
           regulator receiver domain [Bacteroides vulgatus ATCC
           8482]
 gi|294449072|gb|EFG17614.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 616

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 128/216 (59%), Gaps = 13/216 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622
           +++++K++F+ ++S+E+R+PL  I+GF+ ++  ++    N+++  QY + +  ++  L  
Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETE----NAEERLQYYDIVEKNNMRLQE 306

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+N+ILDL+ +++G+M+ NY+ + L  L  +VK + + +       ++++ +    S V 
Sbjct: 307 LINEILDLSKIESGMMEFNYAPVSLYILCEDVKNTYSFRCQPG---VELVFEESDPSLVI 363

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             DR RL Q+FS ++ NA  F++KGS       ++  + +F V + GS I +D    +F+
Sbjct: 364 STDRNRLFQVFSNLIGNATKFTAKGSISFGYKLKEK-EIVFHVADTGSGISDDKIDKIFD 422

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF+      Q +G GLGLSI +  +   GG +++ S
Sbjct: 423 RFI--MANNQVQGTGLGLSISKIIVEKLGGKIAVQS 456


>gi|123473622|ref|XP_001319998.1| ATPase [Trichomonas vaginalis G3]
 gi|121902794|gb|EAY07775.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 1406

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 28/347 (8%)

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYN----------ESDGWDLFAAIITSFDDERKSLQ 515
            LW+  ++R +P   IR+I    S+               D  + FA  +    DE   ++
Sbjct: 801  LWRFSDDR-NPLPPIRSITPRHSKILRMNWSTVDEQVHEDYKEQFAKKLRQAIDESGWIE 859

Query: 516  GTLELLSDSVLEYSII----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
              L ++SD V  +  +         + +   +++TD+  A   L EK +A  +A+  K  
Sbjct: 860  SDLPIISDGVETWVSVRGQGDCFARRIIGVLIDITDNRNAFMELEEKGQAAEQANREKTQ 919

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+P+  I G  D+L   +   L  +Q   V+ I +SS  L+ L++D L+L+
Sbjct: 920  FLANMSHEIRTPMNGIFGMLDVLAYQE---LTQEQRLLVDSIRSSSFQLMRLLDDTLNLS 976

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
             ++ G ++   +T+ L  ++     + +++   + I   +I      + V AD Q ++QI
Sbjct: 977  KIEQGELESTPTTVNLLKIIEPTMIANSSRARMSKISFSIIVSKNFPTLVYADSQLIMQI 1036

Query: 691  FSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
             + +LSNA+ F+ KG  V LK         DN   + SV + G  I E+  K +F RF+ 
Sbjct: 1037 INNLLSNALKFTKKGG-VTLKMKWDSTPTSDNEYLVVSVSDTGIGISEEQKKVIFERFMQ 1095

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  R   G GLGL +V+      GG+V + S+    +T   RIP
Sbjct: 1096 AETSTSRYYGGTGLGLPLVQEIARFLGGNVDVQSTPGEGSTFIVRIP 1142


>gi|182415664|ref|YP_001820730.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177842878|gb|ACB77130.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 378

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 555 LTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           LTE+ ++L     KA+  KN F+   +++LR+PL +I G  + L+   +G L++ Q   V
Sbjct: 135 LTEQQKSLVDQLSKANAAKNKFLGMAAHDLRNPLASIRGLAEFLRDGVVGPLSADQLDLV 194

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I A+S  +L +VN++LD+AT++AG +K++ +   L DL+ +          + N RI+
Sbjct: 195 QTIHAASQSMLTMVNELLDVATIEAGELKIDPAQHNLGDLIEKAVYLANIDAAKKNTRIE 254

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +           D  ++ Q+   +LSNA+ +S  GS + +    D  +  F VK+ G  I
Sbjct: 255 ITPPASPLYPSFDPAKMQQVVDNLLSNAVKYSPPGSRITVVLHGDGRECSFGVKDQGPGI 314

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE+    +F  F  +S    G  +  GLGL+I       H G ++ ++   G       +
Sbjct: 315 PENERDRLFKDFGRLSVKPTGGEKSTGLGLAICRKITEAHHGSITAANLPGGGCEFRVTL 374

Query: 789 P 789
           P
Sbjct: 375 P 375


>gi|291566207|dbj|BAI88479.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1006

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  +++KN F+  VS+ELR+PLT I G   LL +        +  +++E     +  L+ 
Sbjct: 770 RAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIEIALLETERLVR 829

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +VNDILD+  +++G ++         +L+ +V  S+    H ++I ++++         A
Sbjct: 830 MVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITLEILPTSV--QLWA 887

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            R  +LQ  + ++ NA+ FS   +TV L A   +   +F V++ G  IP +  K++F+RF
Sbjct: 888 ARDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEKLKTIFSRF 947

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V  +   Q+ G GLGLSI +S I  HGG + + S     +T    IP
Sbjct: 948 QQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIP 996


>gi|171915988|ref|ZP_02931458.1| putative histidine kinase [Verrucomicrobium spinosum DSM 4136]
          Length = 476

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 20/220 (9%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ HVS+E+RSPLT+IIG  +LL  +  G       + +E I AS   LL LVND+L
Sbjct: 227 KSRFLAHVSHEIRSPLTSIIGHAELLAKNPDGKTGR---ECLEAIQASGRALLRLVNDLL 283

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-----DGKLGSFVA- 682
           DL+ ++ G +KL+   + + D+L+EV       +HE  IR K ++       ++ + +  
Sbjct: 284 DLSHMEVGRLKLDPGPVSVRDVLHEV-----ALVHEGAIREKGLAFICRTSPEVPALLEL 338

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCK 736
           D +R+ Q+   ++SNA+ F+ +GS  +      +       D  F V + G  I E   K
Sbjct: 339 DAERMKQVLDNLVSNALKFTQEGSIALEAFGTRVAGTHPRFDLQFRVSDTGMGISEKDQK 398

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F  +         RG GLGLSI    + L GG +++ S
Sbjct: 399 RIFRDYEQGTEHAAGRGAGLGLSISRQLVQLMGGTIALKS 438


>gi|163739669|ref|ZP_02147078.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161387128|gb|EDQ11488.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 842

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 16/233 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT   +A  KAD+ K  F+ ++S+E+R+P+  IIG +D+L  S    L+++Q Q V+ I 
Sbjct: 448 LTYAKQAAEKADQAKTEFLANMSHEIRTPMNGIIGMSDILAES---PLSAEQEQCVDTIR 504

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL ++NDILDL+ ++AG M+++     L   ++     +  K+ E  +       
Sbjct: 505 DSSVALLKIINDILDLSRLEAGKMEISTVDFNLRKCVDGAVDVLRPKLREKGLTFTQTFA 564

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730
            +L   V  D  RL QI   +LSNA+ F+  GS V L  +RD  D       V + G  I
Sbjct: 565 RELPEQVHGDDGRLRQILVNLLSNAVKFTQYGS-VSLHVSRDVKDPYHLFIDVVDTGIGI 623

Query: 731 PEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ED  + VF RF      +  H G   G GLGL+I        GG +S++S++
Sbjct: 624 SEDQARHVFERFSQADAATTRHYG---GTGLGLTISNILAQRMGGGISLNSNE 673


>gi|76817567|ref|YP_336536.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
 gi|254264305|ref|ZP_04955170.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
 gi|76582040|gb|ABA51514.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
 gi|254215307|gb|EET04692.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 769

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           L    +A R+AD    +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++
Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  L  +V DILD +++  G ++L+   + L  ++N+V  ++      + I + V
Sbjct: 435 AIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV 494

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      D +RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I 
Sbjct: 495 ECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGIS 554

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +    VF  F     A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 555 PEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|307947441|ref|ZP_07662774.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp.
            TrichSKD4]
 gi|307769259|gb|EFO28487.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp.
            TrichSKD4]
          Length = 1749

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 128/245 (52%), Gaps = 6/245 (2%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
            AE  LT+       A+  K+ F+  +S+E+R+PL  IIGF++++   + G + N +  +Y
Sbjct: 1502 AEEELTQAKRQAENANSQKSDFLAKISHEIRTPLNAIIGFSEVMMDERFGEIGNERYKEY 1561

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++ I  S + +++L+ND+LDL+ ++AG + L ++ + + D++NE    +  + +   + I
Sbjct: 1562 LKDIRTSGSHIMSLINDLLDLSKIEAGKLDLQFTAVSIKDIVNECVAIMQPQANRERVII 1621

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728
            +      + + VAD + L QI   +LSNA+ F+  G   I+  A  D G+ +  V++ G+
Sbjct: 1622 RASLPDSVPNVVADPRSLRQIVLNLLSNAIKFNKSGGQAIVSTAFEDTGEVVLRVRDTGT 1681

Query: 729  SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             +      +    F  +  A  G   G GLGL + ++ +  +     I S+ +  T +  
Sbjct: 1682 GMSAKDLSAALEPFRQLHTARHGS--GTGLGLPLTKALVEANRASFRIDSTPDQGTLVEI 1739

Query: 787  RIPSK 791
              P++
Sbjct: 1740 SFPTQ 1744


>gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 1239

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 167/345 (48%), Gaps = 23/345 (6%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           S  VA F  +G I  +N  F +L   E+N +    H    +A  +   +  + W+     
Sbjct: 533 STSVAEFSMNGTILDANATFLTLLGYEKNEVIGKHHSIFCSAQDAASASYRNKWEAL--- 589

Query: 504 ITSFDDERKSLQGTLELL----SDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERA 554
                +  + +QG  + L    S+  +  S  PL NA     + ++  +++T+  R E  
Sbjct: 590 -----NRGEFVQGEFKRLGKNGSEVWIHASYSPLLNADGKPSKVLMFMIDITERTRMEND 644

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +   +A   K +F+ ++S+E+R+P+  IIGF++++  ++   +  +Q +Y+  I+
Sbjct: 645 LKLAKDKAEQAASAKATFLANMSHEIRTPMNAIIGFSEIMMDTE---MQDEQRRYMNTIN 701

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL+L+NDILD A ++ G ++L      L +L++ +  ++  +    N+ +++  D
Sbjct: 702 NSAKSLLHLLNDILDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQAKRKNLDLQLELD 761

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
               S ++    R+ QI   +L N++ F+  G   ++    DN +  FS+ + G  IP+D
Sbjct: 762 PNTASYYLGAPDRIRQILMNLLGNSIKFTEHGYVKLVVKQLDNHELSFSIIDTGIGIPQD 821

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F  F        R+  G GLG +I +  + L GG ++  S
Sbjct: 822 RLDVIFEPFTQADSSMSRKFGGTGLGTTISKQLVELMGGRLTAKS 866


>gi|253571977|ref|ZP_04849382.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838574|gb|EES66660.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 883

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 130/254 (51%), Gaps = 18/254 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T     E  L E  E   ++D +K++F+ ++S+E+R+PL  I+GF+ L+  T  +   
Sbjct: 642 DITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDTEDM--- 698

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ QY++ +  ++ +LL L++DILDL+ ++AG        + +N L  ++  ++  K 
Sbjct: 699 -EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKA 757

Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             N   ++++ D  L     ++DR RL Q+ S  ++NA+ F+ +G+  +     D     
Sbjct: 758 RPN---VEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLR 814

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F + + G  I  +M   +F RFV   S  H     G GLGLSI  S +   GG + + S 
Sbjct: 815 FYIADTGIGIEPEMQNEIFERFVKLNSFVH-----GTGLGLSICRSIVEQLGGEIGVDSE 869

Query: 778 DEGVTTINCRIPSK 791
            E  +     +P K
Sbjct: 870 PEKGSCFWFTLPIK 883


>gi|119511392|ref|ZP_01630504.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119463937|gb|EAW44862.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 411

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 4/253 (1%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTS 597
           M+  +++T+  +AE  L++  E +++  E+K  F+  V ++ R+PL N++ F++ LLK  
Sbjct: 157 MIAGIDITEYKQAESDLSQTLEQIKQLSELKAQFMSMVCHQFRTPL-NVVSFSNSLLKRH 215

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  K    +++I +    +  +++DIL  A  +A  +  +   + L +  NE+   
Sbjct: 216 INYCQEEKTGPLLDHIQSGVEQITKMLDDILFFAKAEAAKLNFDAKPLNLVEFCNELIAQ 275

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           + T   EN  RI  +S G+  +   D++ L  + S +L NAM +S  GS V  K   + G
Sbjct: 276 MQTNGSEN--RINFVSQGRYITACMDQKLLEPMISNLLDNAMKYSPIGSVVDFKLFCECG 333

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +F V + G  IP      +F  F   ++     G GLGLSIV++ ++LH G++++ S 
Sbjct: 334 KVVFQVTDRGIGIPVADIPRLFEPFYRGSNIHHLPGTGLGLSIVKTLVDLHRGYIAVESE 393

Query: 778 DEGVTTINCRIPS 790
               TT    +P+
Sbjct: 394 LGVSTTFTMMLPA 406


>gi|158319283|ref|YP_001511790.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
 gi|158139482|gb|ABW17794.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
          Length = 556

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  K E  R A+ +KN  + +VS++LR+PLT+I+G+ +LLK  +  +   +  QY+   
Sbjct: 314 ALQTKIEEERAAEMLKNELITNVSHDLRTPLTSIMGYLNLLKDKRYET-EEEAYQYLNIA 372

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L +L+ D+ + A +    +KLN S + LN L++++ + +   + E  +  K   
Sbjct: 373 YGKSEKLKDLIQDLFEYAKLTNEGVKLNLSEVHLNSLIDQLTEELVPILDEKQLSFKKDI 432

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +    +AD  +++++F  +L+NA+  SS G+ ++++ + D  + I  V+N G  I  +
Sbjct: 433 SKEDTIVLADADKMVRVFENLLTNAIRHSSVGTEILVQTSVDEDNVIICVENTGEPISSE 492

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             + +F+RF  V  +      G GLGL+I ++ INLH G +
Sbjct: 493 YLERIFDRFFKVEKSRTSNSAGSGLGLAISKNIINLHKGSI 533


>gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1051

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 14/233 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERA   K++A+ +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L + Q  YV
Sbjct: 381 AERA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLADT---PLTATQRDYV 433

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   ++ K  E  I + 
Sbjct: 434 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIELT 493

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
           V IS       V D  RL Q+    +SNA+ F+ +GS  +    L++        FSV++
Sbjct: 494 VSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAIIEFSVQD 553

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +G  I E   K +F  F        R+  G GLGL+I    + L GG + + S
Sbjct: 554 SGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLES 606


>gi|228927068|ref|ZP_04090133.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832575|gb|EEM78147.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 444

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 329

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S++   V ++A ++ G  +  VK++G  I
Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSNENGKVYIEATKNEGQAVIKVKDDGIGI 386

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443


>gi|320167537|gb|EFW44436.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864]
          Length = 1482

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 139/254 (54%), Gaps = 26/254 (10%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +++ V++TD  R   A   ++EAL+  +A+E K+ F+ ++S+E+R+PL  I+G T ++ T
Sbjct: 600 LVSIVDLTDQRRVNAA---ESEALKEKQANEAKSRFLANMSHEVRTPLNCILGMTQIMMT 656

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYSTIVLNDLL 651
           +   SLN +QS Y+  I  S+ ILL ++NDILD + ++AG      +  N+  I  N ++
Sbjct: 657 T---SLNDEQSDYLGTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITEN-IV 712

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST--- 707
           + +  S ATK    N+ +    D KL   FV D  R  QI   ++SN + F++ GS    
Sbjct: 713 DLLFPSAATK----NLLLSCYIDPKLPRVFVGDPNRFQQILVNLVSNGIKFTTTGSVSLR 768

Query: 708 VILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
            +L    D+ + +  F + + G  I  +    +F RF  V ++      G GLGL I +S
Sbjct: 769 CLLDEDVDDQNMVVRFEIIDTGIGIEAEALDRLFQRFSQVDSSITRSYGGTGLGLVICKS 828

Query: 764 FINLHGGHVSISSS 777
            +NL GG + + S+
Sbjct: 829 LVNLMGGTIGVDST 842


>gi|110597907|ref|ZP_01386189.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340484|gb|EAT58970.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 892

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 135/259 (52%), Gaps = 14/259 (5%)

Query: 530 IIPLPNAQTMLT-FVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I P+ N + ++T FV + + +  ++ L        E   ++D +K +F+ ++S+E+R+P+
Sbjct: 478 ISPVLNEEGVITNFVAIKEDITEKKKLWSELIAAKEHAEESDRLKTAFLANISHEIRTPM 537

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G +++LK   L     +QS Y++ I  S   LL L+NDI+D++ ++AG   +  S 
Sbjct: 538 NGIVGLSEILKDPDLS--KEEQSLYIDLIDQSCQRLLYLINDIIDISRIEAGKTNVKISR 595

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             +N  L ++         +  +R+     +SD +      D  +L QI + +L NA+ F
Sbjct: 596 TPVNTTLRDLHAFFKPLAEQKGLRLSCTTGLSDSE-SVIETDSTKLTQILTNLLQNALKF 654

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           + +G  +    AR+     F V ++G  I  DM   +F RF    N+      G GLGLS
Sbjct: 655 TREGH-IDFGYARNKNTLEFYVADSGIGISPDMQTKIFERFRQADNSLTRNYEGAGLGLS 713

Query: 760 IVESFINLHGGHVSISSSD 778
           I +++I + GG +S+ S++
Sbjct: 714 ISQAYIEMLGGLISVKSTE 732


>gi|29347243|ref|NP_810746.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339142|gb|AAO76940.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 882

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 130/254 (51%), Gaps = 18/254 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T     E  L E  E   ++D +K++F+ ++S+E+R+PL  I+GF+ L+  T  +   
Sbjct: 641 DITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDTEDM--- 697

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ QY++ +  ++ +LL L++DILDL+ ++AG        + +N L  ++  ++  K 
Sbjct: 698 -EERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKA 756

Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             N   ++++ D  L     ++DR RL Q+ S  ++NA+ F+ +G+  +     D     
Sbjct: 757 RPN---VEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLR 813

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F + + G  I  +M   +F RFV   S  H     G GLGLSI  S +   GG + + S 
Sbjct: 814 FYIADTGIGIEPEMQNEIFERFVKLNSFVH-----GTGLGLSICRSIVEQLGGEIGVDSE 868

Query: 778 DEGVTTINCRIPSK 791
            E  +     +P K
Sbjct: 869 PEKGSCFWFTLPIK 882


>gi|332667571|ref|YP_004450359.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336385|gb|AEE53486.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 857

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 14/224 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K  F+ ++S+E+R+P+  IIGFT + LKT     L++KQ +Y+  I  S   L+ L+NDI
Sbjct: 354 KQQFLSNMSHEIRTPMNAIIGFTKVVLKTE----LSAKQKEYLTAIKMSGDALIVLINDI 409

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LDLA VDAG M    +   L   +  +     TK+ E N+ +  + D ++    V D  R
Sbjct: 410 LDLAKVDAGKMDFEETPFRLAFSITAMLHLFETKIQEKNLALVKVYDEEIPEVLVGDPVR 469

Query: 687 LLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           L QI   ++SNA+ F++KG    S  +L A  D     F+V + G  I +D   ++F  F
Sbjct: 470 LHQIILNLVSNAVKFTNKGQITVSVRMLHADADKVTIEFAVADTGIGITKDKIPTIFENF 529

Query: 743 VSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
              A  G  R   G GLGL+I +  +   GG + + S  E  +T
Sbjct: 530 -QQASSGTSRLYGGTGLGLAIAKQLVEKQGGTIRVESVVEQGST 572


>gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1831

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 129/263 (49%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1343 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1402

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  + + 
Sbjct: 1403 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1462

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715
            V +S     +   D QRLLQ+   +LSNA+ F+  GS  ++++ ARD             
Sbjct: 1463 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLEA 1522

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1523 GSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1582

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1583 LLGGEIHAQSEPGRGSTFTLYLP 1605


>gi|254192371|ref|ZP_04898810.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei S13]
 gi|169649129|gb|EDS81822.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei S13]
          Length = 769

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           L    +A R+AD    +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++
Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  L  +V DILD +++  G ++L+   + L  ++N+V  ++      + I + V
Sbjct: 435 AIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV 494

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      D +RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I 
Sbjct: 495 ECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGIS 554

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +    VF  F     A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 555 PEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|325263735|ref|ZP_08130468.1| putative non-motile and phage-resistance protein [Clostridium sp.
           D5]
 gi|324030773|gb|EGB92055.1| putative non-motile and phage-resistance protein [Clostridium sp.
           D5]
          Length = 651

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 126/237 (53%), Gaps = 5/237 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L +A++ K++F+ ++S+ELR+PL +IIGF  +L     G LN KQ QY+  I  S   
Sbjct: 403 EELEEANKCKSAFLANMSHELRTPLNSIIGFASILHDELFGELNEKQKQYIFVILDSGNH 462

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L++DIL    +D  +  ++   + +ND++  V  S+   +   + ++ +    +   
Sbjct: 463 LLALIDDILHFVKLDRHVETISLKEVNVNDIIENVSMSVMPLVQSKDQKLVIDIKPEDTG 522

Query: 680 FVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCK 736
             A  D Q++ Q+   +LSNA+ F+ +   + ++    N   +  SV +NG  I ++  K
Sbjct: 523 LTAMWDAQKIRQLLLNMLSNAIKFTPENKEIRIQFRPANEAAYFISVIDNGIGIEDEFKK 582

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            VF+ F  V+++     +GVGLGL+I    + +H G + +  +  G   ++  +P +
Sbjct: 583 KVFHPFEQVNSSFTRNYQGVGLGLAICRELVEMHQGRIWLEDNPSGGLIVHVVLPVR 639


>gi|251773086|gb|EES53640.1| putative multi-sensor signal transduction histidine kinase
           [Leptospirillum ferrodiazotrophum]
          Length = 307

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 4/232 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R  + I+  FV +VS+E+R+PLT+I G+ + L    L      +S ++  IS S+  L 
Sbjct: 71  IRGLERIRKDFVANVSHEIRTPLTSIRGYAEALSDGALADPELAKS-FLGIISTSADRLS 129

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+L+L+ +++G + L  S I +  L + +++    ++ +  +R++     +  +F+
Sbjct: 130 RLVNDLLELSRLESGTVDLRLSPIEMGALADRLREEFFDRLSQKEMRLEA-DFSRPFTFI 188

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +D   L  +   +L NA+ +SS GS+V L AA D+      V++ G  IPE+    +F R
Sbjct: 189 SDDSLLHLVLVNLLDNAIKYSSPGSSVRLGAAMDDEGIQIDVEDRGMGIPEEELPRIFER 248

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  V  +      G GLGLSIV   + L  G V++ S+    TT++  +PS+
Sbjct: 249 FYRVDRSRSPAVPGTGLGLSIVRHVMTLLSGRVTVRSALGKGTTVSLHLPSR 300


>gi|91201393|emb|CAJ74453.1| similar to ammonium transport protein amtB possibly fused to
           histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 679

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N AL KA+ +K+ F+  +S+ELR+PL  IIGF ++L+    GSL+  Q +YV  I 
Sbjct: 437 LQMANVALEKANRLKSEFLTTMSHELRTPLNAIIGFAEVLRDEIAGSLSKDQKEYVTDIH 496

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL+++N+ILDL+ ++ G M L Y    + D +N+    I    +   I +     
Sbjct: 497 SSGHHLLDMINNILDLSKIETGKMHLQYEEFCIEDAINDTLTIINASANNKGISVHTNIQ 556

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733
                  AD+ +  QI   +LSNA+ F+ +   + +   + +    F + + G  I PED
Sbjct: 557 DNTPLLSADKTKFRQILYNLLSNAVKFTPENGKITINVFQKDNSLQFEIVDTGIGIKPED 616

Query: 734 MCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             K    F++  ++  R +  G GLGL + +  + LHGG +
Sbjct: 617 KEKLFEAFHQADASLTR-EYEGTGLGLHLTKRLVELHGGKI 656


>gi|260173495|ref|ZP_05759907.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|293372779|ref|ZP_06619160.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632288|gb|EFF50885.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 606

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 139/534 (26%), Positives = 240/534 (44%), Gaps = 56/534 (10%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN-DQLTHTYEILHNLTVAIAIFDQNR 326
           T E+GN K Y I        + GI I  + +   N +++ H   I  NL V I ++D++ 
Sbjct: 89  TDENGNTKVYGIAET-----QEGIHIASAHQALQNSERILHN--IYKNLPVGIELYDKDG 141

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSS 385
            +       V+L + D+     +   D L   +     LPE++  K    EN    ++  
Sbjct: 142 QM-------VDLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYD 194

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-----LTVQVDLETKYNTLVKVQG-ET 439
            +  + ++ PN  T  + +T+  +  T++   +     L + VD         K+Q  E+
Sbjct: 195 FSKINKYYQPNSTTGFIDLTT--KVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFES 252

Query: 440 I-----DHLSEGVAVFGPDGRIKLSNPAFRSLWKT--EENRLSPGTHIRNIAATCSRYYN 492
                 D+   G A F    R      A RS ++   EE     GT +  I    S ++ 
Sbjct: 253 FFDLVGDYAKVGYAHFDALSR---DGYALRSWYRNVGEEE----GTPLPEIIGIHSHFHP 305

Query: 493 ESDG--WDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-V 543
           E      D    +I       S D   +   G       +VL  +  P  N   ML    
Sbjct: 306 EDRAVMIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQPQDNIIEMLCINF 365

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+ LL+ +      
Sbjct: 366 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEA---EDA 422

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y   I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ QS+  +  
Sbjct: 423 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 482

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           E  + I +  +    +F +D+ RL Q+    ++NA+ F+S+GS VI    R NG+ + FS
Sbjct: 483 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGSIVI--DYRINGNEVRFS 539

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  I  +  +++F RFV         G GLGL I +S +   GG + + S
Sbjct: 540 VQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPICQSIVTQLGGKIGVES 591


>gi|126724550|ref|ZP_01740393.1| hypothetical protein RB2150_11981 [Rhodobacterales bacterium
           HTCC2150]
 gi|126705714|gb|EBA04804.1| hypothetical protein RB2150_11981 [Rhodobacterales bacterium
           HTCC2150]
          Length = 398

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 178/402 (44%), Gaps = 37/402 (9%)

Query: 161 GSC-----AFLRILSLDGIYSELAETTLKCKKLSNHISVF-----KVLFDSLDFLVWHRD 210
           G+C      F+R  S   + S + ETT    K    +  F     K + +  + L W  +
Sbjct: 10  GACFALLVLFIRPKSNVTVGSNVHETTRDHAKPRMLVEAFPKELLKWITEQKNLLAWVEN 69

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE----KNFCETV 266
              D++WA+ +      T G + + A    RK   E+        SA +    KNF   V
Sbjct: 70  SNADVIWASPAIADEL-TNGSLIESAFEILRKPCGEKPGHAQFRPSASKSDPSKNF--EV 126

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIF 322
           +  E GN   +             +A++ S       Q+++  + L N    L+  +AIF
Sbjct: 127 TNKEVGNQTIF-------------LAVETSHASETKSQMSNFVQTLTNTFALLSTGLAIF 173

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D+NR L   N +  +L  ID A+L   P+ D LLE +R+   L E  ++KTW+E++ ++ 
Sbjct: 174 DRNRQLVMFNPALGDLTRIDPAWLTRKPTLDALLERMRNDQTLGEPKDFKTWRESLPNLV 233

Query: 383 KSS--ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
           K +   T+++ W L  G+TL V+   +P G  + +FE+++ +V  + +    V+V    +
Sbjct: 234 KQAVNGTYEEIWTLATGETLRVVGRPHPHGAIVLLFEDISSEVSADRRQRLEVEVTQNAL 293

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D ++E +++F  DG +  +N  F  ++         G +I +   T + ++  +  W   
Sbjct: 294 DTINEAISIFSHDGEMLTANKPFVQMFDLNPFDNLEGINIIHATKTWAEFFGANPIWGDT 353

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
              +T   + R S    +            +P+PN  T++ F
Sbjct: 354 REFVTDIQN-RVSWHNDILFNDKQTSRVRFVPMPNGTTLVGF 394


>gi|270000570|ref|NP_844382.2| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|269850218|gb|AAP25868.2| sensor histidine kinase [Bacillus anthracis str. Ames]
          Length = 465

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 233 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 291

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 292 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 350

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++G  I
Sbjct: 351 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 407

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 408 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 464


>gi|167916549|ref|ZP_02503640.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 112]
          Length = 771

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           L    +A R+AD    +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++
Sbjct: 378 LRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAID 434

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  L  +V DILD +++  G ++L+   + L  ++N+V  ++      + I + V
Sbjct: 435 AIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV 494

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      D +RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I 
Sbjct: 495 ECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGIS 554

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +    VF  F     A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 555 PEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 602


>gi|153939075|ref|YP_001392896.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152934971|gb|ABS40469.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295320873|gb|ADG01251.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
 gi|322807867|emb|CBZ05442.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 469

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++        
Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V + D K+ 
Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLEDDKV- 355

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  K +
Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++RF  ++  R  +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116]
 gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116]
          Length = 932

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  I   + D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVEIRSQSGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2]
 gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2]
          Length = 925

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K EA + A+ +K+ F+  +S+ELR+PL  ++GFT  L KT     LN  Q  Y++ I  S
Sbjct: 279 KKEA-QDANRVKSDFLAKMSHELRTPLNGVVGFTRQLYKTP----LNKHQKDYLDTIELS 333

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +  LL ++NDILD + ++AG M+L      L D +NEV   +A   H+ N+ + + I D 
Sbjct: 334 ANSLLAIINDILDFSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAHDKNLELSINIHDN 393

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731
              S + D  R  QI   ++SNA+ F+  G  +I    R   +       ++ ++G  I 
Sbjct: 394 VPDSLIGDPTRFKQILINLISNAIKFTESGHVLIDVDCRHYANQRTSIFVAINDSGIGIS 453

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            +   ++F+ F        R+  G GLGL I +  +   GGH+S++S+
Sbjct: 454 ANKQDALFSAFGQADSSITRKFGGTGLGLIITKHLVEAMGGHISLNSA 501


>gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gi|300073351|gb|ADJ62750.1| Hpt sensor hybrid histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 723

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 132/251 (52%), Gaps = 14/251 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A T+L  +   ++ R    L +  EA   A   + +F+  +S+E+R+P+  ++G   LL
Sbjct: 55  HALTLLRLLR--ENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLL 112

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           ++++L   +++Q+++ + I  S+  LL +VND+LD + +D G M +      L  ++   
Sbjct: 113 RSTRL---DTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEAS 169

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709
            ++++ K  E  +R+    D +L    V D  R+ QI   +L NA+ F+  G  ++    
Sbjct: 170 AEALSFKAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQA 229

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFIN 766
           L+   D+    F V+++G  + ED  + +F+ F    S+  R Q  G GLGLSI +  + 
Sbjct: 230 LQVTSDHCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTR-QYGGTGLGLSICKRLVE 288

Query: 767 LHGGHVSISSS 777
           L GG + + S+
Sbjct: 289 LMGGSIGVESA 299


>gi|256376337|ref|YP_003099997.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255920640|gb|ACU36151.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 399

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  E A+ +   A + A+ +K  F   VS+ELR+PLT++ G  +LL + + G + ++ S+
Sbjct: 152 VELECAVVQSTLAAQDAERVKRDFTALVSHELRTPLTSVHGSLELLASGRFGEMQAQASR 211

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            VE    ++  L+ L ND+LDL+ V +G ++L  + + L D++      IA +       
Sbjct: 212 LVEIAVKNTDRLVRLANDVLDLSRVQSGQLRLRPAPVELADVVENA--VIAVEGTAERCH 269

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + +++     +   D  RL+Q+ + +L+NA+  S  G  V +  + +       V+++G 
Sbjct: 270 VPLVTRKDPVTVRGDADRLVQVVTNLLANAVKVSPPGQPVEVGCSVEGSVARVYVRDHGM 329

Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I +D  K +F  FV   A  G   G GLGL+I    +  HGG +++ S
Sbjct: 330 GITDDEVKRIFEPFVQLGAKSG---GAGLGLAITRGIVESHGGTIAVES 375


>gi|253687500|ref|YP_003016690.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754078|gb|ACT12154.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 951

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   ++V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 438 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 497

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL    ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +
Sbjct: 498 ---SLPQDANRLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSN 554

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + +  + +    D K+  S   D  RL Q+ S +LSNA+ F+  G  +     RD 
Sbjct: 555 YLPLVVKKRLTLYCFIDPKVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIIFEVGCRD- 613

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I
Sbjct: 614 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 673

Query: 775 SSSDEGVTTINCRIP 789
            S     +    RIP
Sbjct: 674 ESEPGLGSLFGVRIP 688


>gi|237711472|ref|ZP_04541953.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454167|gb|EEO59888.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 807

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 133/240 (55%), Gaps = 16/240 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  ++   + 
Sbjct: 557 DITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLTETE--DMK 614

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  +  ++ +LL L++DILDL+ +++G  +   S   +N L  E+ +S+  K+ 
Sbjct: 615 DRK-QYMAIVQENTELLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVP 673

Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                ++++ +  L      AD+ RL Q+ S  ++NA+ F+  GS  +    + +G   F
Sbjct: 674 AG---VELVFEKCLPECHVWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRF 730

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            V++ G  IP +  K+VF+RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 731 YVRDIGMGIPRNKIKTVFDRFVKLNSFVH-----GTGLGLSICKSLVEQMGGTIGVESEE 785


>gi|196039677|ref|ZP_03106981.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196029380|gb|EDX67983.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 453

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L+ LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 280 -ISGETDRLIQLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 338

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++G  I
Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSYKNGKVYIEATKNEGQAVIKVKDDGIGI 395

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 396 AKEHLPYIEQSFYQINNH---AIGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452


>gi|52550550|gb|AAU84399.1| two-component hybrid sensor and regulator [uncultured archaeon
           GZfos9E5]
          Length = 424

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 151/309 (48%), Gaps = 38/309 (12%)

Query: 516 GTLELLSDSVLEYSIIPLPN----AQTMLTFVNVT----DSVRAE---RALTE----KNE 560
           G+ E+   S+ E +I  +P        +L+ + +T       RAE   R L E    KN 
Sbjct: 111 GSEEIAVQSIHEGAIDYIPKDHLTKDRLLSTIKITLETWKRKRAEEEKRRLMEELETKNA 170

Query: 561 ALRKADE----------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            L+KA E          +K  F+   S+ELR+PLT +     +L+   +G L+ KQ + +
Sbjct: 171 ELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKLDKKQEKSI 230

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-----N 665
           E +  + T L NL+ DILDL+ ++AG +KL++ ++ LND + E     A KM E      
Sbjct: 231 EVVLRNLTRLENLIGDILDLSRIEAGRIKLSFDSMNLNDAVKE-----AIKMQEAFAKGK 285

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI I      ++ + + D +RL Q    +L+NA+ FS K   VI++  R   +  FS+ +
Sbjct: 286 NIEISA-KLAEMPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIETKRLGKNVQFSITD 344

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +   K +F  F  + ++   +  G GLGL+I +  I  H G +   S     +T
Sbjct: 345 YGIGISKADQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKGST 404

Query: 784 INCRIPSKE 792
               IP+K+
Sbjct: 405 FYFVIPTKQ 413


>gi|115360386|ref|YP_777523.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285714|gb|ABI91189.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 768

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 8/234 (3%)

Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +R +R+L    +A  +AD    +K+  +  VS+ELR+PL  I G+ ++L+ ++  +L   
Sbjct: 372 LRTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDAL--- 428

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + Q ++ I  S+  L  +V DILD +++  G ++++   + +  L ++   +  T     
Sbjct: 429 EQQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSA 488

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I ++            D +RL Q+ + ++SNA+ F+  G  V +  +RD+   +  V +
Sbjct: 489 GIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVAD 548

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G  IP      VF+ F    ++    RRG+GLGLSIV     LHGG V + S+
Sbjct: 549 TGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGLHGGQVRVESA 602


>gi|326317129|ref|YP_004234801.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373965|gb|ADX46234.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 299

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 6/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + E LRKA E+K+ F+ ++S+E R+P+++I     LL     G LN++QS+ V +I 
Sbjct: 49  LDTQAEQLRKATEMKSRFLAYMSHEFRTPISSIRSIARLLADHVDGPLNAEQSRQVAFIQ 108

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A++    ++V+D+LDLA ++AG + ++ +   + DL   ++           + +     
Sbjct: 109 ATAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVDLFQALRGMFKPVATNPELNLVFEEP 168

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L +   D ++L QI    +SNA+ F+ +G   +   A D     FSV + G  I  + 
Sbjct: 169 RNLPALFTDDRKLSQILRNFISNALKFTPRGEVRVSAQACDGERVRFSVADTGIGIAPEF 228

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG---VTTINCRI 788
              VF  F  V +  + + RG GLGL++      L GG V + S   EG     T+  R+
Sbjct: 229 HARVFEDFSQVGSPLQKRLRGTGLGLALCRQLAELLGGAVELQSVPGEGSVFSVTLPVRL 288

Query: 789 P 789
           P
Sbjct: 289 P 289


>gi|256840736|ref|ZP_05546244.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738008|gb|EEU51334.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 761

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ +    E  L    E   ++D +K++F+ ++S+E+R+PL  I+GF++L+  S+    
Sbjct: 513 LNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M   +    LN L+NE+  +    M
Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631

Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E   +R++V    ++   VA D  RL Q+ S  ++NA+ F++ G   +       GD +
Sbjct: 632 PEGVELRMRV---PEIPVVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              V++ G  IPE+  K VF+RF       Q  G GLGL+I +      GG + + S
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743


>gi|218674838|ref|ZP_03524507.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli GR56]
          Length = 332

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 5/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+V   +RAE A +   +A   A++ K+ F+  VS+ELR+PL  I+GF+D+L     G  
Sbjct: 37  VSVEQQLRAE-AQSRAADA-ESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKF 94

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N +Q +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A +
Sbjct: 95  ENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQ 154

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                + +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    
Sbjct: 155 AKSKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSVDAAARDGILKL 214

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  I  D    +   FV   +   RR  G GLGLS+V+  + LHGG+ +I+S   
Sbjct: 215 TVSDTGIGIAADKLAMLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIASQPG 274

Query: 780 GVTTINCRI 788
             T I   I
Sbjct: 275 EGTIITIEI 283


>gi|163733036|ref|ZP_02140480.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis
           Och 149]
 gi|161393571|gb|EDQ17896.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis
           Och 149]
          Length = 752

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 190/391 (48%), Gaps = 43/391 (10%)

Query: 417 ENLTVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           EN  V+ DL   +  + +V+    ++I+ +++G A + PD  + ++N ++ +++   E+ 
Sbjct: 59  ENKRVKSDLSAAHKQIERVERRLWQSIETINDGFAFYSPDLELIMANNSYLAVFDGLED- 117

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSII 531
           + PG        T  ++  E          I +  D + +   Q  +E +  +  E  II
Sbjct: 118 MQPGVSY----VTVLQFLTEEG--------IVNIGDMQPAEWRQKMIERVQSAEPEAVII 165

Query: 532 PL-------------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L             P+   +   +N+T +V+ E  L     +   A   K++F+ ++S+
Sbjct: 166 KLWNNEYIRMIDRRGPDGDIISLGINITAAVQYEEQLKAARASAEAASRAKSAFLANMSH 225

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  ++G  D+L  +    L+ +Q  YV+ I  S   LL ++ND+LD + ++A  +
Sbjct: 226 EIRTPMNGVVGMADVLTET---PLSEEQRLYVDTIKNSGEALLVIINDVLDYSKIEAEKL 282

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
           +L+     L   ++EV + + +   +  I + V     L S F+ D  RL QI + +L N
Sbjct: 283 QLHPEPFNLEKSIHEVLRLLQSIARDKGILLCVDYSLLLTSDFIGDPGRLRQILTNLLGN 342

Query: 698 AMDFSSKGSTVILKAARDN---GDFIFSVK--NNGSSIPEDMCKSVFNRF--VSNAHRGQ 750
           A+ F+++GS  +  + + +   G  I  V+  + G  IPEDM   VF  F  V +    Q
Sbjct: 343 AVKFTTEGSVTVRVSGKPDEATGKVIVQVRVEDTGIGIPEDMIDHVFGEFNQVESERNRQ 402

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             G GLGL+I +  I +  G + + +S+EGV
Sbjct: 403 FDGTGLGLAITKQLIKMMDGQIWL-TSEEGV 432


>gi|330982197|gb|EGH80300.1| response regulator receiver [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 1031

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 9/233 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 335 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 394

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNI 667
           E I ++   LLNL+NDILD++ V+AG +++   N S   L + L  + Q +A    E  +
Sbjct: 395 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAA---EKKL 451

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              V I  G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++
Sbjct: 452 AFTVDIQTGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDS 511

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           G  I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 512 GIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 564


>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1346

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 11/264 (4%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             AQ       + D  R +  L   NE L +A  +K+ F+ ++S+E+R+P+  ++G T+LL
Sbjct: 782  QAQKRQLEATLEDLRRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELL 841

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                   L  +Q + VE I  S   LL ++NDILD + ++AG ++L      L + + +V
Sbjct: 842  LEM---DLTKEQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDV 898

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                A +     + +    + +      D  RL Q+ S ++ NA+ F+ +G  V+++A  
Sbjct: 899  ITLFAPRAAAKQLELICFIEERALEVQGDPHRLRQVLSNLIGNAIKFTERGE-VVVEAEL 957

Query: 715  DNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            +  D     +  SV++ G  IP D    +F  F        RR  G GLGL+I +  + +
Sbjct: 958  ERLDERRAHWRISVRDTGIGIPPDRLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEM 1017

Query: 768  HGGHVSISSSDEGVTTINCRIPSK 791
             GG + + S     +T   RIP +
Sbjct: 1018 MGGTIGVESEVGKGSTFTVRIPFR 1041


>gi|168181011|ref|ZP_02615675.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|226950998|ref|YP_002806089.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|182668143|gb|EDT80122.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|226843174|gb|ACO85840.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 469

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++        
Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V + D K+ 
Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLEDDKV- 355

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  K +
Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++RF  ++  R  +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|148255684|ref|YP_001240269.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407857|gb|ABQ36363.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains [Bradyrhizobium
            sp. BTAi1]
          Length = 1695

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 20/260 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L  KQ ++
Sbjct: 1000 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPDGNLTMKQVEF 1059

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  + T LLNL++DILDL+ +++G + ++   I+  +LL  V +    +     +  
Sbjct: 1060 ARTIHGAGTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRLLSF 1119

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------- 719
             +  D  L  S V D +RL Q+   +LSNA  F++ G  V LK +   G +         
Sbjct: 1120 NIDVDPNLARSIVTDSKRLQQVLKNLLSNAFKFTADGG-VRLKVSAALGGWSAEHPVLNT 1178

Query: 720  -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
                  F V + G  IP+D  K +F  F   A  G  R   G GLGL+I     NL GG 
Sbjct: 1179 APAVIAFEVSDTGIGIPQDKQKLIFEAF-QQADAGTSRKYGGTGLGLAISRELANLLGGE 1237

Query: 772  VSISSSDEGVTTINCRIPSK 791
            + + S+    +T    +P K
Sbjct: 1238 IHLKSAPGKGSTFTLYLPLK 1257


>gi|262381341|ref|ZP_06074479.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296518|gb|EEY84448.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 761

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ +    E  L    E   ++D +K++F+ ++S+E+R+PL  I+GF++L+  S+    
Sbjct: 513 LNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M   +    LN L+NE+  +    M
Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631

Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E   +R++V    ++   VA D  RL Q+ S  ++NA+ F++ G   +       GD +
Sbjct: 632 PEGVELRMRV---PEIPVVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              V++ G  IPE+  K VF+RF       Q  G GLGL+I +      GG + + S
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743


>gi|260774547|ref|ZP_05883460.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260610453|gb|EEX35659.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 642

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 2/212 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           RK D++K+ F+  +S+ELR+PLT+I G  +LL    +GS++ K    +     ++  L  
Sbjct: 412 RKLDKMKDQFISTISHELRTPLTSIKGSLNLLAGGAVGSISDKAQALLVTAERNAQRLTT 471

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+LD+  + AG M + +    L  LL+E   S+++   ++N+ ++            
Sbjct: 472 LINDLLDMEKLVAGKMPMTFLKQPLGPLLDETIDSLSSYAQQHNVVLQCSGSWPAVQVNV 531

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL+Q  S +LSNA+ FS +G  + +K  + + +    V++ G  +  +    +F RF
Sbjct: 532 DGQRLIQALSNLLSNAIKFSPQGEAITIKVQQQDTNIHILVRDRGQGVAPEFEDRLFQRF 591

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                   R+  G GLGL+I +      GG V
Sbjct: 592 SQADSSDTRKLPGTGLGLAITQEICQQLGGSV 623


>gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
 gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
          Length = 949

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  +IL  ARD 
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG-CIILHLARD- 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  IN+  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFLVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTIRIP 689


>gi|218438826|ref|YP_002377155.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171554|gb|ACK70287.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1285

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 128/240 (53%), Gaps = 8/240 (3%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            LT+  E    A++ K+ F+ ++S+ELR+PL  I+GFT LL  ++  SL+ KQ +YV  I 
Sbjct: 807  LTKAKETADAANKAKSEFLANMSHELRTPLNAILGFTQLL--ARDSSLSDKQHEYVGIIG 864

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S   LL+L+ND+L+++ ++AG + LN +   L  LLN +++    K     +++     
Sbjct: 865  RSGEHLLSLLNDVLEMSKIEAGRITLNENHFDLYRLLNTLEEMFQLKAQSKGLQLIFDCH 924

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFIFSVKNNGSSI 730
              +  ++  D  +L QI   ++ N + F+  GS VIL+   +        F V++ G  I
Sbjct: 925  PDVPQYIKTDESKLRQILINLIGNGIKFTEVGS-VILRVKLSLLSTMTIDFEVEDTGLGI 983

Query: 731  PEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +   ++F  F+   + R  + G GLGL I + F+ L GG++S+ S+    +     IP
Sbjct: 984  APEELDTLFQPFIQTVSGRKSQEGTGLGLPISQKFVQLMGGNISVKSNLNKGSMFRFEIP 1043


>gi|329298019|ref|ZP_08255355.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Plautia stali symbiont]
          Length = 950

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 128/251 (50%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  D+L+T    S
Sbjct: 445 LVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDMLQTK---S 501

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L       V  ++ SS++LL +++DILD + +++  +K+        +++N +  +  + 
Sbjct: 502 LPKGVDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQRPFSPREVVNHIASNYLSL 561

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    + + V  +  +  +   D  RL Q+ S +L+NA+ F+  G  +IL A    G   
Sbjct: 562 VVRKRLTLYVFIENDVPLALDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVKEGYLA 620

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  IP      +F+ F       QR  +G GLGL+I E  IN+  G + + S  
Sbjct: 621 FRVRDTGVGIPAKEITRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEP 680

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 681 GMGSQFVVRIP 691


>gi|320167758|gb|EFW44657.1| multi-sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1432

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 139/254 (54%), Gaps = 26/254 (10%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +++ +N+TD  R   A   ++EAL+  +A+E K+ F+ ++S+E+R+PL  I+G T ++ T
Sbjct: 591 LVSIINLTDQRRVNAA---ESEALKEKQANEAKSRFLANMSHEVRTPLNCILGMTQIMMT 647

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYSTIVLNDLL 651
           +   SLN++QS Y++ I  S+ ILL ++NDILD + ++AG      +  N+  I  N ++
Sbjct: 648 T---SLNNEQSDYLDTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITEN-IV 703

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST--- 707
           + +  S ATK    N+ +    D +L    V D  R  QI   ++SN + F++ GS    
Sbjct: 704 DLLFPSAATK----NLLLSCFIDPQLPRVLVGDPNRFQQILVNLVSNGIKFTTSGSVSLR 759

Query: 708 VILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
            +L +  D+   +  F V + G  I  D    +F RF  V ++      G GLGL I +S
Sbjct: 760 CLLDSEVDDDHLLARFEVVDTGIGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKS 819

Query: 764 FINLHGGHVSISSS 777
            + L GG + + S+
Sbjct: 820 LVTLMGGTIGVDST 833


>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
          Length = 831

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 125/243 (51%), Gaps = 10/243 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + +VT     E  L +  EA   A   K  F+ ++S+E+R+P+  I+G TDLL  S   +
Sbjct: 145 YRDVTRHRLRELELLQAKEAAEAASRAKGEFLANMSHEIRTPMNGILGMTDLLLDS---A 201

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +Q  Y++ + +S+  LL L+NDILD + ++AG + L      ++ L+ E  +++A +
Sbjct: 202 LAPEQRDYLQTVKSSAEALLTLLNDILDFSRIEAGRLSLEEIDFSISGLVAETLRTLALR 261

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
            H+  + +   ++         D  R+ Q+ + ++ NA+ F+ +G   +     D  D  
Sbjct: 262 AHQKGVELFFDVAPDVPAVLKGDPARIRQVLTNLVGNAIKFTERGEIELDVTVVDTDDRH 321

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              + +V++ G  IP +  +++F  F    +   R+  G GLGL+I +  + L GG + +
Sbjct: 322 ATLLVTVRDTGIGIPAEKTEAIFGAFAQADNSTTRKYGGTGLGLAICKHLVELMGGELRV 381

Query: 775 SSS 777
            S+
Sbjct: 382 QST 384


>gi|302388871|ref|YP_003824692.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302199499|gb|ADL07069.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 483

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 23/251 (9%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS------------ 607
           + + + +E+KN F+  VS+ELR+PLT I G+T  L ++  G+  + +S            
Sbjct: 234 QEIMRQEELKNEFIASVSHELRTPLTAIKGWTITLLSAIRGTSQAGRSDIRENAGVPDRR 293

Query: 608 ---------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                    + +E I+  S  L  LV ++LD +  +AG +KLN   + L D LN +K  +
Sbjct: 294 VYLNLDELIEGLEIITKESERLSELVEELLDFSRFEAGAIKLNLDKVALVDTLNYIKTQM 353

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +     +  ++  +  L   +AD  R+ Q+   +L NA  F+  G  V +KA   N  
Sbjct: 354 MPRAKRQAVEFEIYPEEGLPEILADENRIKQVLINLLDNAFKFTPAGGRVRVKAESANDS 413

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
               V++ G  IP +    V  +F     + ++ G GLGL+I +  + LHGG + I+S+ 
Sbjct: 414 VRIIVEDTGCGIPPEDLPHVTKKFYK--AKSKQPGSGLGLAICDEIVRLHGGRMEITSAP 471

Query: 779 EGVTTINCRIP 789
              T +   +P
Sbjct: 472 GKGTRVEVILP 482


>gi|148381482|ref|YP_001256023.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|153933607|ref|YP_001385857.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153934677|ref|YP_001389264.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|148290966|emb|CAL85102.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929651|gb|ABS35151.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152930591|gb|ABS36090.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 469

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++        
Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V + D K+ 
Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLEDDKV- 355

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  K +
Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++RF  ++  R  +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|78223629|ref|YP_385376.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78194884|gb|ABB32651.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 827

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 8/227 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E   +A+ +K  F+  +S+E+R+P+  IIG   LL+ + L   + +Q + V+  S
Sbjct: 314 LVQAREEAEEANRVKGEFLATMSHEIRTPMNAIIGINQLLQETHL---SQQQRRLVDDSS 370

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL ++NDILD + V+A  ++L+   + L   +  +++  A K    NI + ++  
Sbjct: 371 NAAESLLTIINDILDFSRVEARRLELSDEALELRSFVESLRRLFAVKAERENISLSILVG 430

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIP 731
            +   F+  D  RL Q+ + +LSNA+ F+  G  V L A  D   G+ +F+V + G  I 
Sbjct: 431 DEAPQFICGDPARLRQVLTNLLSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTGIGIE 490

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +D  + +F  F        R   G GLGL+I    + L GG + + S
Sbjct: 491 KDKHERIFEMFRQADSSTTRNYGGTGLGLAITRGLVELMGGTIEVES 537


>gi|330900706|gb|EGH32125.1| response regulator receiver [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 934

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 3/230 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 238 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 297

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LLNL+NDILD++ V+AG +++      +  L+  ++        E  +   
Sbjct: 298 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLIEGLRTLFQPLAAEKKLAFT 357

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I  G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++G  
Sbjct: 358 VDIQTGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSGIG 417

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 418 IAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 467


>gi|323138790|ref|ZP_08073854.1| histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322395938|gb|EFX98475.1| histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 574

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 8/218 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  VS+E+R+PL  ++G   LL  ++L   +++Q+ YVE I+ SS  L  L++DIL
Sbjct: 66  KSRFLATVSHEIRTPLNGVMGLAQLLAMTRL---DAEQASYVEAINDSSRSLAQLIDDIL 122

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D + ++AG ++L   T  L  L+  V + +A +     + I   I+         D  RL
Sbjct: 123 DFSKIEAGKLELRRETFALAPLVEGVVELLAPRALAKGLEIASHIAPEAPQEMEGDPARL 182

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   ++ NA++F+  G  V +K  RD     F V++ GS +PE    ++F  F     
Sbjct: 183 RQVLVNLIGNAVNFTDHGG-VGVKVGRDGEMLRFEVQDTGSGVPEAARAAIFEEFEQGDA 241

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSIS-SSDEGVT 782
              RR  G GLGL+I    +   GG ++++ +S EG T
Sbjct: 242 SETRRHGGTGLGLAISRRLVAQMGGVLTLAVTSPEGST 279


>gi|224535375|ref|ZP_03675914.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523016|gb|EEF92121.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 497

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 135/239 (56%), Gaps = 12/239 (5%)

Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           NEALRKA   DE+K+ F+ ++S+E+R+PL  I+GF+ LL    L        ++   I  
Sbjct: 262 NEALRKARHSDELKSIFLANMSHEIRTPLNAIVGFSSLLAHGDLDLTKDDIIEFTSLIEK 321

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S +L+ L++DILDL+ +++  M+ N+  I L+ +LNE+  +    M +  + + +   G
Sbjct: 322 NSQLLMVLISDILDLSKIESNTMEFNFCNISLHQVLNEIGSAQRMNM-KKGVELLLDLPG 380

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
           +  +   D  RL Q+ + +++NA+ F+S+G+  I  + A  N   IF V++ G+ + +++
Sbjct: 381 QEITISTDPTRLSQVINNLVNNAIKFTSEGNICIGYRPATSNRVKIF-VEDTGTGMAKEV 439

Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + +F+RF    ++G   ++G GLGL+I  +      G + ++S+    T     +P K
Sbjct: 440 IEHIFDRF----YKGDAFKQGTGLGLAICRTIAERFKGKIEVASTPGKGTRFTIILPLK 494


>gi|163792969|ref|ZP_02186945.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159181615|gb|EDP66127.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 757

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 3/260 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L +  T+L   +VT S  AE  L +  +   +A+  K+ F+  +S+ELR+PL  I+G ++
Sbjct: 489 LGDGGTLLIATDVTHSKDAELELRKAVDTAEEANAAKSGFLARMSHELRTPLNAILGLSE 548

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L   +     +K+ +Y+  +  +  ILL+ ++DIL+ A +DA    +          + 
Sbjct: 549 TLMLMEDRLSPAKRREYLGDVMQAGRILLSHIDDILNFARLDADGFAVTPQPTDPRRSVA 608

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV + +       ++R++      L S +AD + + QI   +LSNA+ FS K   V L  
Sbjct: 609 EVVRLMRVVARSRSVRLEAALARNLPSVLADPRSIRQILINLLSNAVKFSPKHGVVQLMV 668

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG-QRRGVGLGLSIVESFINLHG 769
            +D     FSV ++G  IP D    +F  F  V N        G GLGLSIV+S ++ + 
Sbjct: 669 IQDGSRLRFSVSDHGIGIPADQIDQIFEPFHQVGNPSLAVPDSGTGLGLSIVKSLVDRNA 728

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G V++ S+    TTI+   P
Sbjct: 729 GAVAVDSTPGRGTTISVWFP 748


>gi|46202456|ref|ZP_00053185.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1136

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 19/269 (7%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRK--------------ADEIKNSFVQHVSYELR 581
            A  +LTF++ TD    ++ L    ++LR               A+  K+ F+ ++S+ELR
Sbjct: 853  AGAILTFIDETDLRNTQKDLEASIDSLRSTQGELKEAKNIAESANRAKSEFLANMSHELR 912

Query: 582  SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            +PL  ++GF  ++     GSL N +  +Y+  I  S   LL L+  +LD++ ++AG   L
Sbjct: 913  TPLNAVLGFAQIMADEMWGSLGNDRYKEYIGIIVNSGQHLLALIGQVLDMSVIEAGRTTL 972

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              S + ++D++    + ++++   + I +       L     D   + +I   +L NA+ 
Sbjct: 973  RESNVNISDVIVTSMRLLSSQAENSEINLTASVPDDLPHMRGDLTAIQRILLNLLGNALK 1032

Query: 701  FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLG 757
            F+  G  V L A+ D       V++ G  I       V   F        R +R GVGLG
Sbjct: 1033 FTPAGGAVTLTASHDQSGVTICVRDTGIGISAHDLDRVLMPFEQGGQRILRKEREGVGLG 1092

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINC 786
            L I +S + LHGG +SI S  EG  T  C
Sbjct: 1093 LPITKSLMELHGGTLSIDSK-EGKGTTAC 1120


>gi|255014923|ref|ZP_05287049.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 761

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ +    E  L    E   ++D +K++F+ ++S+E+R+PL  I+GF++L+  S+    
Sbjct: 513 LNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M   +    LN L+NE+  +    M
Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631

Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E   +R++V    ++   VA D  RL Q+ S  ++NA+ F++ G   +       GD +
Sbjct: 632 PEGVELRMRV---PEIPVVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              V++ G  IPE+  K VF+RF       Q  G GLGL+I +      GG + + S
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743


>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
 gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
          Length = 1398

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 10/244 (4%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            F N     R E AL +   A   A+  K+ F+ ++S+E+R+P+  +IG  +LL  +    
Sbjct: 841  FTNAELRFRHETALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDT---D 897

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+ +Q  + + + AS   LL ++NDILD + ++AG ++L +    L  LL      +  K
Sbjct: 898  LSDEQRDFADMLLASGESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLK 957

Query: 662  MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD 718
              E N+    +   ++  F   D  R+ QI + +  NA+ F+  G+  +  +  + +NGD
Sbjct: 958  AVEKNLEFNCVVSPEVPVFFKGDPGRIRQILNNLAGNAIKFTQNGNVTVAVSMQSENNGD 1017

Query: 719  FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
             +  FSVK+ G  IPE     +F  F        R+  G GLGL+I    + L GG + +
Sbjct: 1018 AVLRFSVKDTGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVELMGGKIGV 1077

Query: 775  SSSD 778
             S +
Sbjct: 1078 ISHE 1081


>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1069

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 19/255 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L E  E    A   K+ FV ++S+E+R+P+  +IG  +LL  +    L 
Sbjct: 304 DITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDT---PLT 360

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y   I +S   LL ++NDILD + ++AG + L      ++  + EV   +A + H
Sbjct: 361 PEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAH 420

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKA 712
              +  I  I  G       D  RL Q+ + ++ NA+ F+ +G  V+            A
Sbjct: 421 AKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSVSLSKEEKSAPA 480

Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
               G  +  F VK++G  I E+  K +F  F        RR  G GLGL+I    + + 
Sbjct: 481 GERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMM 540

Query: 769 GGHVSI-SSSDEGVT 782
           GG + + SS  EG T
Sbjct: 541 GGEIGLKSSPKEGST 555


>gi|90418087|ref|ZP_01225999.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337759|gb|EAS51410.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 501

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           E A    +EA  +A+E    K+ F+  +S+ELR+PL  I+GF++++    LG + N    
Sbjct: 242 EMAKIMSDEARSRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMSNEILGPIGNESYK 301

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  I AS   LL L+N+ILDL+ V+AG   L+   + +  +  +    +  K    ++
Sbjct: 302 DYIADIHASGQHLLGLINEILDLSRVEAGRYALSEEAVDIVAIARDCLGYVRVKAEAKDL 361

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
            I    +  L +  AD + L QI   +LSNA+ F+ +G  + L+      G    +VK+N
Sbjct: 362 VIGAEFEADLPAMWADERSLRQIILNLLSNAVKFTPRGGEITLRVGWTAGGGQYLAVKDN 421

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  IPE+    V + F   S A +   +G GLGL IV++ + +H G   + S
Sbjct: 422 GPGIPEEEIPIVLSSFGQGSIAIKSAEQGTGLGLPIVQALMKMHDGSFELRS 473


>gi|47527271|ref|YP_018620.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184845|ref|YP_028097.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49477455|ref|YP_036139.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196036949|ref|ZP_03104328.1| sensor histidine kinase [Bacillus cereus W]
 gi|254684570|ref|ZP_05148430.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254721328|ref|ZP_05183118.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254741274|ref|ZP_05198962.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254750825|ref|ZP_05202864.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|47502419|gb|AAT31095.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178772|gb|AAT54148.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49329011|gb|AAT59657.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195990438|gb|EDX54427.1| sensor histidine kinase [Bacillus cereus W]
          Length = 453

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++G  I
Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 395

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452


>gi|170756067|ref|YP_001783182.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169121279|gb|ACA45115.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 469

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++        
Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V + D K+ 
Sbjct: 297 LTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLEDDKV- 355

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  K +
Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++RF  ++  R  +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|154251392|ref|YP_001412216.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155342|gb|ABS62559.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 617

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 36/310 (11%)

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  + +  W L +A + SF   R  L G                           +VT
Sbjct: 322 CLKRRDGAVIWALVSAAVVSFHGRRALLIG-------------------------IQDVT 356

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605
              +   AL E  +    A   K+ F+ ++S+ELR+PL  IIGF++ L+    G + N +
Sbjct: 357 VRHKEAEALREARDQATAASRSKSEFLANMSHELRTPLNAIIGFSEALERELFGPVGNPR 416

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y E I  S   LL+L+NDILDL+ ++AG  KL+     L+ ++    + +  +  + 
Sbjct: 417 YREYAEDIHDSGVHLLSLINDILDLSKIEAGHFKLHEDETDLDHIVAAATRIVRHRAQQA 476

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI I+        + + D + L Q+   ++SNA+ FS  GS ++++A         SV +
Sbjct: 477 NIAIECRLPQPPLAVLVDERALKQVLINLVSNAVKFSPDGSLILVEANVTTQGLRISVAD 536

Query: 726 NGSSI-PEDMCKSV--FNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            G  I PED+ +++  F +    +S AH     G GLGL + +    LH G + I S+ +
Sbjct: 537 KGVGIAPEDIPRALTPFTQLDGSLSRAH----EGTGLGLPLAKHLTELHDGKLFIESAVD 592

Query: 780 GVTTINCRIP 789
             TT+   +P
Sbjct: 593 VGTTVYVDLP 602


>gi|83593368|ref|YP_427120.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
 gi|83576282|gb|ABC22833.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
          Length = 866

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 6/237 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D +R E  L +  +    A+  K+ F+  +S+ELR+PL  ++G  DLL  +    L+
Sbjct: 474 DISDQIRHESDLRKVKDEAEVANRAKSDFLAVMSHELRTPLNGVLGMADLLCDTP---LD 530

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q +Y   I+ S+  LL ++NDILDL+ ++AG + L         LL  V+  +     
Sbjct: 531 AEQRRYTRTIAISAEALLVIINDILDLSKIEAGHLDLESRPFDPATLLEGVRTLMEGPAR 590

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  I ++  I   K    + D  RL QI   + +N + F+ KGS  +   A   G   F 
Sbjct: 591 DKAIALRTSIEGAKPPLRLGDEGRLRQILLNLANNGVKFTEKGSLTLRLKAGTGGALRFE 650

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           V++ G  IP++   ++F+ F   +    RR  G GLGLSI    + L GG +   S+
Sbjct: 651 VEDTGIGIPKEKQDTLFHDFTQVSASTARRFGGSGLGLSICRRLVGLMGGRLGFDST 707


>gi|331083608|ref|ZP_08332719.1| hypothetical protein HMPREF0992_01643 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403819|gb|EGG83371.1| hypothetical protein HMPREF0992_01643 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 515

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 134/245 (54%), Gaps = 10/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA  AL  KNE LR       + ++ +S++LR+PLT+I G   +L ++       KQ Q 
Sbjct: 274 RAAAALMAKNEQLRA------NLLRSISHDLRTPLTSISGNAGILISNADSMGKEKQQQL 327

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I   S  L+NLV ++L +  ++ G MKL  +  +L +++ E    +  +  ++ +R+
Sbjct: 328 YEDIYEDSLWLINLVENLLSVTRIEDGTMKLQLNAELLEEIVQEAVHHVEKRCKKHKLRV 387

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  +  L    AD + ++Q+   ++ NA+ ++ KGS ++++  ++  + + SV +NGS 
Sbjct: 388 QLSEN--LILVKADARLIVQVLVNLVDNAVKYTPKGSEILIETRQEGTNAVVSVSDNGSG 445

Query: 730 IPEDMCKSVFNRFVS-NAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I +++ + +F  F + N+H    RR +GLGL++ +S ++ HGG + +             
Sbjct: 446 ISDEVKEYIFEMFYTGNSHAADSRRSLGLGLALCKSILHAHGGDIFVEDCQPHGARFIFT 505

Query: 788 IPSKE 792
           +P+KE
Sbjct: 506 LPAKE 510


>gi|165870245|ref|ZP_02214901.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167633043|ref|ZP_02391369.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167638329|ref|ZP_02396606.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170686406|ref|ZP_02877627.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170706128|ref|ZP_02896590.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177650820|ref|ZP_02933717.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190566443|ref|ZP_03019361.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|218903127|ref|YP_002450961.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227815204|ref|YP_002815213.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229599899|ref|YP_002866374.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254734874|ref|ZP_05192586.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|164714133|gb|EDR19654.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167513630|gb|EDR88999.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167531855|gb|EDR94520.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129130|gb|EDS97995.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170669482|gb|EDT20224.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172083281|gb|EDT68342.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190562578|gb|EDV16545.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|218537300|gb|ACK89698.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227005627|gb|ACP15370.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229264307|gb|ACQ45944.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 459

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 227 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 285

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 286 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 344

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++G  I
Sbjct: 345 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 401

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 402 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 458


>gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 1137

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 127/253 (50%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    +  L +  E  R AD  K+ F+  VS+ELR+PL  +IGF++LL+ + +    
Sbjct: 734 DITELAEQQEKLQQALEQARAADRAKSYFLATVSHELRTPLNAVIGFSELLQGADVEP-- 791

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y+  I+ +   LLNL+ND+LDL+ ++A  ++L+   + +  L+ E+      K  
Sbjct: 792 QEQQEYLGSINFAGNALLNLINDVLDLSRLEADQVELDCRPVDVKRLVREIVGVFKQKAV 851

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGD 718
           E N+ +++       +   D  R+ QI   +  NA+ F+  G   +     L      G 
Sbjct: 852 EKNLSLQMTYTNLPPTLYLDDLRIKQILLNLTGNALKFTHDGGVTVSAVFRLAEEAGQGT 911

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQR--RGVGLGLSIVESFINLHGGHVSIS 775
            IFS+ + G  I  +    +F  FV ++  RG R   G GLGL+I +  +   GG +S  
Sbjct: 912 LIFSITDTGIGILPEKISQIFEPFVQDSGVRGHRIYEGSGLGLAISKRLVEKMGGKLSAE 971

Query: 776 SSDEGVTTINCRI 788
           S+    +T   R+
Sbjct: 972 STPGKGSTFTVRL 984


>gi|301053530|ref|YP_003791741.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375699|gb|ADK04603.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 453

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++G  I
Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 395

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452


>gi|218459898|ref|ZP_03499989.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Kim 5]
          Length = 374

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + 
Sbjct: 117 DITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIG 176

Query: 604 SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Y+EY   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++E    +  
Sbjct: 177 --HPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQP 234

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
           + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  + + NG  
Sbjct: 235 QANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSV 294

Query: 720 IFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  V++ G  +     D     F +  S   R +  G GLGL + ++ ++ +    SI+S
Sbjct: 295 VLRVRDTGIGMTRAELDHAMKPFRQVSSTQARHRGDGTGLGLPLTKAMVDANRATFSINS 354

Query: 777 SDEGVTTINCRIPSK 791
           +    T +    PS+
Sbjct: 355 APNEGTLVEITFPSQ 369


>gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1977

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 39/276 (14%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            + L E N+ L  A  +K+ F+ ++S+ELR+PL  I+G T+ L     GS+N++Q + ++ 
Sbjct: 1554 QQLAESNQKLAHATRLKDEFLANMSHELRTPLNAILGMTEGLTDVIFGSINTQQKKALQT 1613

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I  S+  LL L+NDILD+A +++G ++LN +   +  L       I  +    NI ++V 
Sbjct: 1614 IDRSAHHLLELINDILDVAKIESGQIELNCAATSVLLLCQSSLSFIKQQALRKNIHLEVQ 1673

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----------------- 715
                +     D +R+ Q+   +L+NA+ F+ +G +V L   R                  
Sbjct: 1674 IPPHVPDVWVDERRIRQVLINLLNNAVKFTPEGGSVTLSVQRQLIVQDPPPLQGITKVRV 1733

Query: 716  --------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRG 753
                                +     +V + G  IP      +F  FV   +A   Q  G
Sbjct: 1734 HRTPIEQQLGIQLQTSQFEVHNYLRIAVTDTGIGIPSHYLHKLFQPFVQIDSALNRQYTG 1793

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             GLGL++V+  + LHGG V ++S++   +     +P
Sbjct: 1794 TGLGLALVKRIVELHGGEVGVTSTEGAGSCFTIDLP 1829


>gi|189466425|ref|ZP_03015210.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM
           17393]
 gi|189434689|gb|EDV03674.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM
           17393]
          Length = 628

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 125/231 (54%), Gaps = 10/231 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R ++ L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ +L  +   +   +  
Sbjct: 388 SQRHKKELIQAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAET---TDTPENH 444

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I  ++ +LL L+NDILDL+ ++AG++   Y+ + +N  + +++ +   +M  N  
Sbjct: 445 EYIRIIEDNNYLLLQLINDILDLSRIEAGLLDFCYTDVDVNSCIRKLEDTFRFRMPAN-- 502

Query: 668 RIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +K +++  +       ++ RL+Q+     SNA+ ++++GS  I      N    F V++
Sbjct: 503 -VKCVTEFSMKKCYIHTEKNRLMQVLGNYFSNAIKYTNQGSITIGYYPPKNEKIRFYVRD 561

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  I  D  +++F RFV   +  Q  G GLGLSI +         V I S
Sbjct: 562 TGCGISPDKQQTIFQRFVKLDNFKQ--GTGLGLSICQMIAEKMNATVGIHS 610


>gi|291453163|ref|ZP_06592553.1| histidine kinase [Streptomyces albus J1074]
 gi|291356112|gb|EFE83014.1| histidine kinase [Streptomyces albus J1074]
          Length = 797

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K+  LR A   K  F  +VS+ELR+P+  +I    LL  +    L  +Q Q V  I+
Sbjct: 398 LEDKSRRLRLASAAKTRFWANVSHELRTPVNAVIALAQLLLDAGAEPLTDEQHQQVSLIA 457

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL LV ++LD A  ++G ++       L  +L++++ ++A+   E ++ +++   
Sbjct: 458 GSGNTLLALVEELLDTAKAESGRLEPQLVEADLRTVLHQLRGTLASTTAE-DVTLEIADT 516

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIP 731
              G FV D   L +I   +LSN++ F+++GS  +  A     D    +F+V + G  IP
Sbjct: 517 AFPGPFVTDEVMLTRILRNVLSNSLKFTTEGSVRLTVADERRADGPWAVFTVTDTGVGIP 576

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ED  + VF  F  V   H+    G GLGL        L GG ++++S
Sbjct: 577 EDEIEQVFEEFYQVRGVHQRHVSGTGLGLPYARKLTELLGGRLTLTS 623


>gi|182678896|ref|YP_001833042.1| integral membrane sensor signal transduction histidine kinase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634779|gb|ACB95553.1| integral membrane sensor signal transduction histidine kinase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 594

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 127/241 (52%), Gaps = 8/241 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607
           E+A    + A R+A+E    K+ F+  +S+ELR+PL  I+GF++++K    G+ + S   
Sbjct: 273 EQARVNSDLARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKGELFGAHVISSYK 332

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I AS   LL L+N+ILDL+ ++AG ++L    + L  ++++ +  +A K  +  +
Sbjct: 333 DYSNDIHASGQHLLTLINEILDLSRIEAGHLELRDDCVALAHVVDDCRHLLALKAKKRGL 392

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
            I+   +  L    AD + L Q+   +L+NA+ F+  G  + +K     NG    S+ ++
Sbjct: 393 TIEEHVEPDLPRLRADERALRQVALNLLTNAVKFTPPGGWIKIKIGWTANGGQYVSIHDS 452

Query: 727 GSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783
           G  IPE+    V + F     A +    G GLGL IV+  ++LH G  S+ S   EG   
Sbjct: 453 GPGIPEEEMPIVMSSFGRGTLAQKNALEGSGLGLPIVKGLVDLHNGTFSLKSRLHEGTEA 512

Query: 784 I 784
           I
Sbjct: 513 I 513


>gi|302187737|ref|ZP_07264410.1| response regulator receiver [Pseudomonas syringae pv. syringae 642]
          Length = 1172

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 9/233 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNI 667
           E I ++   LLNL+NDILD++ V+AG +++   N S   L + L  + Q +A    E  +
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAA---EKKL 592

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              V I  G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++
Sbjct: 593 AFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDS 652

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           G  I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 653 GIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|300864985|ref|ZP_07109816.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337020|emb|CBN54966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1629

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 125/244 (51%), Gaps = 12/244 (4%)

Query: 538  TMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            TML  V  N+  ++     +TE+    +K + IKN F+  VS+ELR+PLT I     L+K
Sbjct: 1374 TMLQDVDENIIGTISIGEDITER----QKLEHIKNEFIGIVSHELRTPLTGIQMSLGLIK 1429

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            T        K  + +E     +  L+NLVNDILDL  +D+G   L  +     DL+ +  
Sbjct: 1430 TGVYDRKPEKARRMIEIALLDTHRLVNLVNDILDLERIDSGRAVLEKTVCKAADLIQQAV 1489

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
              I     +  I + +I+   +  + A    ++Q  + +L NA+ FS   ST+ L +A +
Sbjct: 1490 DGIQAIATQQQISL-IITPTDVKVWAAP-DTIIQTLTNLLGNALKFSPPHSTIHL-SAEN 1546

Query: 716  NGDF-IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              DF +F V++ G  IP D  + +F RF  V  +   ++ G GLGLSI +S I  HGG +
Sbjct: 1547 QADFALFQVRDRGRGIPADKLELIFGRFQQVDASDSREKGGTGLGLSICQSIIERHGGKI 1606

Query: 773  SISS 776
             + S
Sbjct: 1607 WVES 1610


>gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 985

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 13/261 (4%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            + +I+P+  A   +  +     ++T S + ER L E   A   AD  K+ F+ ++S+E+
Sbjct: 560 FDTNIVPVTGADGEVDLIIGIERDITRSKQRERELAEAKLAAEHADRAKSEFLANMSHEI 619

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  IIG  DLL  ++   L +   Q VE I +S+  LL ++NDILDL+ ++AG   +
Sbjct: 620 RTPMNGIIGMADLLAEAE---LTADDQQNVETIRSSAQALLKIINDILDLSRLEAGKFAI 676

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +     L D +         K  E  + ++V  ++G       D  RL QI   ++ NA+
Sbjct: 677 SREDFNLRDCIGGAADLFRPKALEKGLSMQVSYANGLPDRLHGDDGRLRQILVNLIGNAV 736

Query: 700 DFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
            F+  G   +   +A  D    +  V+++G  I E   K +F+RF     A      G G
Sbjct: 737 KFTPDGKIAVRVSQAGEDPCRLVVEVEDSGIGISETQAKHIFDRFTQADAATTKAFGGTG 796

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I        GG +++ S
Sbjct: 797 LGLTISSMLAKRMGGGITVQS 817


>gi|161936294|ref|YP_131202.2| hybrid sensory histidine kinase BarA [Photobacterium profundum SS9]
          Length = 927

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L+S Q  Y+  I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTR----LSSSQHDYLLTIEKSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
            ++NDILD + ++AG + L        + L+EV + +A   HE  + + +  D ++    
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ NA+ F+ +G+   +V LKA++D   +  F+V++ G  I E    
Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTS 501


>gi|150008085|ref|YP_001302828.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298376562|ref|ZP_06986517.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
 gi|149936509|gb|ABR43206.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298266440|gb|EFI08098.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
          Length = 761

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ +    E  L    E   ++D +K++F+ ++S+E+R+PL  I+GF++L+  S+    
Sbjct: 513 LNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M   +    LN L+NE+  +    M
Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631

Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E   +R++V    ++   VA D  RL Q+ S  ++NA+ F++ G   +       GD +
Sbjct: 632 PEGVELRMRV---PEIPVVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              V++ G  IPE+  K VF+RF       Q  G GLGL+I +      GG + + S
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743


>gi|170720398|ref|YP_001748086.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169758401|gb|ACA71717.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 919

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLSTIEKSA 331

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   +  + +I    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLVQDTLTILAPAAHAKQLELLSLIYRDT 391

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI- 730
             S V D  RL QI + ++SNA+ F+ +G T++++A      +DN     SV++ G  + 
Sbjct: 392 PSSLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEQQDNAQLRISVQDTGIGLS 450

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           P+D+ +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 451 PQDV-RTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498


>gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580]
 gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580]
          Length = 593

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 166/355 (46%), Gaps = 38/355 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498
           +++GV     DG I ++NP    F   W  E+N  +  G  +              +  +
Sbjct: 260 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNVKEGHEL------------PPEARE 307

Query: 499 LFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           LF   +++  ++    +LQG   +L  S       PL N        +V  +V   R +T
Sbjct: 308 LFQNTVSTEKEQMIEMTLQGRTWVLLMS-------PLYNQS------HVRGAVAVLRDMT 354

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+    R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S   ++ +  + I   
Sbjct: 355 EE----RRLDKLRKDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEEKKEIAQVIYDE 409

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  +  LVND+LDLA ++AG + LN   + L +    V +       + NI +    D  
Sbjct: 410 SLRMGRLVNDLLDLARMEAGHISLNVEPVELREFFERVFRKFYGVAGDKNITLSHNLDLH 469

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
              FV D  ++ Q+ + ++ NA+  ++ G TV +           +VK++GS IPE+   
Sbjct: 470 EAKFVFDPDKMEQVLTNLIDNAIRHTNAGGTVHVDVQSAESGLKIAVKDSGSGIPEEDLP 529

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF     A    + G GLGL+IV++ ++ H G +++ S     T+    IP
Sbjct: 530 FIFERFYKADKARTRGKGGTGLGLAIVKNIVDAHNGSITVHSMLNEGTSFTFYIP 584


>gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 1001

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 134/262 (51%), Gaps = 17/262 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F ++TD    E+ +    E   +AD+ K  F+  +S+ELR+P+  IIG  +LLKT++
Sbjct: 740 VMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLKTTE 795

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+  Q  Y + +  SS  LL+++N+ILD + ++ G M LN   I +  LL  +    
Sbjct: 796 ---LDEDQRNYTDILMESSGSLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLF 852

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
           + K  E  + +   I+       + D  RL Q+   ++SNA+ F+++GS ++ ++     
Sbjct: 853 SAKAKEKGLLLSCSINTTVPDVIIGDGLRLRQVLVNLISNAIKFTNEGSISMSVEGLHRT 912

Query: 717 G----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769
           G       F VK+ G  IP +    +F  F S  H    R   G GLGL+I +  + L G
Sbjct: 913 GTQEFTLAFQVKDTGIGIPAEQQHQLFMSF-SQLHPSLNRKYGGTGLGLAISKKLVELMG 971

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + + S ++  ++    IP++
Sbjct: 972 GVIGVESREQLGSSFYFTIPTR 993


>gi|154490162|ref|ZP_02030423.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
 gi|154089054|gb|EDN88098.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
          Length = 798

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 137/241 (56%), Gaps = 15/241 (6%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           L  + V   +   +   ++ E   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +  
Sbjct: 555 LEMICVNYDITELKETQKQREKAEELDRLKSAFLANMSHEIRTPLNAIVGFSTLLVDT-- 612

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                ++ Q+VE I  ++ +LL L++D+LDLA +++GI++L    + L +L  E+  S+ 
Sbjct: 613 -DDPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVSMR 671

Query: 660 TKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            K+    + + V+ D  L S++   D+ RL QI S  ++NA+  +SKG T++L       
Sbjct: 672 IKV-PAEVALCVVPD--LPSYIMRCDKVRLTQIISNFINNAIKHTSKG-TILLGYEIRWD 727

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSIS 775
           +  FSV + G  +  ++ + VF+RF    ++G   ++G GLGLSI +S I   GG + + 
Sbjct: 728 EIEFSVTDTGDGMSPEVQRHVFDRF----YKGNSFKQGTGLGLSICKSIIEQVGGKIGVE 783

Query: 776 S 776
           S
Sbjct: 784 S 784


>gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
 gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
          Length = 998

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 19/257 (7%)

Query: 546 TDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           TD +R E+    ++   E   +A++ K++F+ ++S+ELR+P+  IIG++++L      + 
Sbjct: 482 TDVIRREKDKQTVSVLKEEAEQANKAKSAFLANMSHELRTPMNAIIGYSEIL------TE 535

Query: 603 NSKQSQYVEYISASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++  +Q+ EYI     I      LL L+NDILD++ ++AG M+L+   I    L  EV  
Sbjct: 536 DATDNQHQEYIPDLKKINSAGKHLLQLINDILDISKIEAGKMELDIQDINFTSLAQEVAD 595

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD 715
           +    + +N   +K+I D  +     D  ++ QI   ++SNA  F+  G+ T+  K  +D
Sbjct: 596 TSDALVTKNGNTLKIIKDESIQGITGDSVKIKQILFNLISNAAKFTENGTITLGYKTYQD 655

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           + +F+   V++ G  I +D    VF  F        R+  G GLGLS+V+ F  L GG +
Sbjct: 656 DNNFLSIYVQDTGIGIEKDKAAKVFEEFGQADSSTTRKYGGTGLGLSLVKKFSELMGGSI 715

Query: 773 SISSSDEGVTTINCRIP 789
            + S     +T    IP
Sbjct: 716 KLESEIGKGSTFTVTIP 732


>gi|228945617|ref|ZP_04107967.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814135|gb|EEM60406.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 444

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 212 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 329

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++G  I
Sbjct: 330 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDDGIGI 386

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 443


>gi|29346593|ref|NP_810096.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338489|gb|AAO76290.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1336

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 131/248 (52%), Gaps = 11/248 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+  + +R L    E    +D++K++F+ ++S+E+R+PL  I+GF+ L+  S+     
Sbjct: 910  DITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESE---NK 966

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             ++  + E + A++  LL L+N+ILDL+ +++GI++   + I +N L  EV  +   +  
Sbjct: 967  EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 1026

Query: 664  ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +    +++I +      V   D+ R+ Q+FS ++ NA  F+  GS         N   +F
Sbjct: 1027 QG---VQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGN-QIVF 1082

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             V + G+ I  +    VF RF    +  Q  G GLGLSI ++ +   GG +S+SS     
Sbjct: 1083 HVTDTGTGIEPEKIGRVFERFAKLNNYAQ--GTGLGLSICKTIVERLGGEISVSSVVGQG 1140

Query: 782  TTINCRIP 789
            TT    +P
Sbjct: 1141 TTFTFTLP 1148


>gi|302381789|ref|YP_003817612.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192417|gb|ADK99988.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 643

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  +AE AL        +A   K+ F+  +S+ELR+PLT I+GF  LL      +L 
Sbjct: 391 DVTERRQAEEALGHARAEAERASRAKSDFLSRMSHELRTPLTAILGFNQLLGMDGE-TLT 449

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V+ IS +   LL ++ ++LD+A ++AG   L    +    LL +V+  IA +  
Sbjct: 450 DDQRHGVDQISRAGGHLLAMIEEVLDIARIEAGGHALAPVPLDPAPLLADVRDLIAPQAQ 509

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +++  D  L S +ADR+  +QI   +LSNA+ +   G  V +     +G     V
Sbjct: 510 AAGVEVRIEGDAGL-SVLADRRATVQIVLNLLSNAIKYGPAGGVVTVTLVGASGRVRIEV 568

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHR-GQRRGVGLGLSIVESFINLHGGHVS 773
           ++ G  +P ++   +F  F   +A R    +G GLGL++        GG VS
Sbjct: 569 RDEGPGVPPELVDRLFIPFDRLDAERWSGAQGSGLGLALSRGLARAQGGEVS 620


>gi|162454319|ref|YP_001616686.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161164901|emb|CAN96206.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 850

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA ++A E++++ +  VS++LR+PL+ I+    ++    +       ++ ++ I  S+  
Sbjct: 617 EAAQRAIELRDNVLATVSHDLRNPLSAILTAAAVMTKRAVTRGEKGDTKAIQAIQRSAHR 676

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L++D+LD A++ AG + L        ++  E  ++  ++  E  I++ V++   +  
Sbjct: 677 MDRLIHDLLDFASLRAGRLALRRQPQDPREIGREAVETFESQAQEKGIQLGVVAADDVPL 736

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              DR R+LQ+ + +LSNA+  +     + L+  R     +FSV + G  IPE+    +F
Sbjct: 737 VTCDRDRVLQVLTNLLSNALQVTGAQGAITLRCERGEEHVVFSVADTGPGIPENELPHLF 796

Query: 740 NRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF     RG+R   +G GLGL+I    +  HGG + + S     TT    IP
Sbjct: 797 ERF----WRGERNGYKGTGLGLAIARELVAAHGGTIDVESRVGVGTTFRFTIP 845


>gi|308125838|ref|ZP_07663534.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308111657|gb|EFO49197.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 778

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 14/233 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERA   K++A+ +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L + Q  YV
Sbjct: 381 AERA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLADT---PLTATQRDYV 433

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   ++ K  E  I + 
Sbjct: 434 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIELT 493

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
           V IS       V D  RL Q+    +SNA+ F+ +GS  +    L++        FSV++
Sbjct: 494 VSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAIIEFSVQD 553

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +G  I E   K +F  F        R+  G GLGL+I    + L GG + + S
Sbjct: 554 SGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLES 606


>gi|254719631|ref|ZP_05181442.1| sensory box histidine kinase [Brucella sp. 83/13]
 gi|265984641|ref|ZP_06097376.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            83/13]
 gi|306837734|ref|ZP_07470602.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF
            2653]
 gi|264663233|gb|EEZ33494.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            83/13]
 gi|306407190|gb|EFM63401.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF
            2653]
          Length = 1036

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 173/385 (44%), Gaps = 56/385 (14%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +D  ++GV +  P+GRI+  N +  +L+  E +                    E++G   
Sbjct: 668  LDTATDGVVLIDPEGRIRSMNHSASALFGYERD--------------------EAEGK-- 705

Query: 500  FAAIITSFDDERKSLQ--------GTLELLSDS-------------VLEYSIIPLPNAQT 538
            F +++ + + +R ++         G L +L+D               L  +I  LP+ + 
Sbjct: 706  FFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRG 765

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                + ++T   R E  LT   +   +    K  F+  +S+E+R+PL  IIGF++L+   
Sbjct: 766  FCAVLRDITQWKRTEEELTNARKEAERTSNQKTEFLARISHEIRTPLNAIIGFSELMADE 825

Query: 598  KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K G + N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E   
Sbjct: 826  KFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIA 885

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  + +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + 
Sbjct: 886  LMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEL 945

Query: 716  NGDFIFSVKNNGSSI----------PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            NGD +  V++ G  +          P     ++  R   +A   +  G GLGL + ++ +
Sbjct: 946  NGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMV 1005

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
              +    +I S+    T +    P 
Sbjct: 1006 EANRAQFAIDSNPGQGTVVEIVFPP 1030


>gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 1053

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 149/264 (56%), Gaps = 13/264 (4%)

Query: 523 DSVLEYSII-PLPNAQTMLT-FVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHV 576
           D  +E ++I P+ N +  +T FV V + +  ++ L        E   ++D +K +F+ ++
Sbjct: 632 DIYIESAVISPIFNKEGSITNFVAVKEDITEKKKLWSELIAAKEKAEESDRLKTAFLANI 691

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  I+GF++LLK   L     +Q++Y+  I+ S   +L+L+N+++D++ +++G
Sbjct: 692 SHEIRTPMNGILGFSELLKEPHLSG--EEQTEYINLINQSGQRMLHLINELVDISRIESG 749

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFV-ADRQRLLQIFSKI 694
              L  +   +N L++++      +  +  +  + ++    L S +  D  ++ QI + +
Sbjct: 750 DTFLQITETSINRLMHDIYAFFRPEAAKKGLLFECIVGLSDLFSVIDTDSSKVNQILTNL 809

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752
           + NA+ F+++GS V  +    N    F V ++G+ IP +M + +F+RF  V N+   +  
Sbjct: 810 VQNALKFTTEGS-VDFRYTLKNDCLEFYVTDSGACIPSEMKEKIFDRFRQVDNSLTRRYE 868

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGLSI +++I + GG + + S
Sbjct: 869 GAGLGLSISKAYIEMLGGKIWVES 892


>gi|270294471|ref|ZP_06200673.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270275938|gb|EFA21798.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 927

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 18/249 (7%)

Query: 535 NAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           N Q  L  VN  +T+    E  L E  E    AD +K++F+ ++S+E+R+PL  I+GF+ 
Sbjct: 675 NGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSS 734

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+   + G +  K+ QY+  I  ++ +LL L++DILDL+ ++AG        + +N L  
Sbjct: 735 LM--GETGDMEEKR-QYMAIIEENNDLLLQLISDILDLSKIEAGTFDFVEKELDVNMLCE 791

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++ + +  K       ++V+ D  L     V+DR RL Q+ +  ++NA+ F++ GS  + 
Sbjct: 792 DIVRFMKMKAKPG---VEVLFDRHLPECRIVSDRNRLNQVIANFVNNAIKFTTAGSIRVG 848

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINL 767
               D     F V + G  I  +M   +F+RF+   +  H     G GLGLSI +S I  
Sbjct: 849 YNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKLNTFVH-----GTGLGLSISKSIIEQ 903

Query: 768 HGGHVSISS 776
            GG + + S
Sbjct: 904 LGGTIGVDS 912


>gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1434

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 11/250 (4%)

Query: 535 NAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N    L FV + T   R E +L     +   A + K+ F+  +S+ELR+PL  +IG T+L
Sbjct: 681 NTDLCLCFVLDATAQKRTEASLEGARRSAEAASKAKSDFLASMSHELRTPLNGVIGMTEL 740

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +    L+++Q+Q+V    +S   LL L+ND+LD + ++AG ++L+     L  LL++
Sbjct: 741 LANT---DLDARQTQFVRACKSSGESLLALINDVLDFSKIEAGRLELDEHEFDLMSLLDD 797

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
           +   +  ++   +I++    D      +  D  RL Q+   ++ NA+ F+ +G   +   
Sbjct: 798 LMNVMGLRVSGKDIQMLYRVDHPHTLLLRGDSHRLRQVLVNLIGNAIKFTERGKISLRVE 857

Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            L+   D     F+VK+ G  IP D    +F  F        R   G GLGL I +S + 
Sbjct: 858 PLELTEDRAKLRFAVKDTGIGIPADRLDRLFKTFTQVDSSITRTFGGTGLGLCICKSLVE 917

Query: 767 LHGGHVSISS 776
             GG + + S
Sbjct: 918 AMGGEMGVDS 927


>gi|254490059|ref|ZP_05103252.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010]
 gi|224464723|gb|EEF80979.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010]
          Length = 896

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 4/240 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L  K EA R A+  K+ F+  +S+ELR+PL  I+GF+ L+ +    +LN KQ   + 
Sbjct: 505 EALLKAKYEAER-ANNAKSEFLSSMSHELRTPLNGILGFSQLILSDTEHTLNEKQRHNIN 563

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL+L+ND+L+L+ +D+G +K +   + +  +  E +  +     + NI I  
Sbjct: 564 QIIHSGKHLLSLINDVLELSEIDSGRIKTSDDHVPIASVFEECQPLLQALAKQQNINID- 622

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
             DG     +AD  +L Q+F  ++SNA+ ++  G  V++ A+    N     ++ + G  
Sbjct: 623 FQDGTDAVVLADFTKLKQVFITLVSNAIKYNKTGGEVLVSASVQTHNNSLKLTITDTGKG 682

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I +D    VF  F          G G+GLS+ +  I   GG +  +S++   T+    +P
Sbjct: 683 ISKDRQAQVFTAFERLGQERHVEGAGIGLSVSKRLIEAMGGQIDFASTEGQGTSFWIELP 742


>gi|46914623|emb|CAG21400.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum SS9]
          Length = 903

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L+S Q  Y+  I  S+  LL
Sbjct: 260 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTR----LSSSQHDYLLTIEKSANNLL 315

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
            ++NDILD + ++AG + L        + L+EV + +A   HE  + + +  D ++    
Sbjct: 316 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGL 375

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ NA+ F+ +G+   +V LKA++D   +  F+V++ G  I E    
Sbjct: 376 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQA 435

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S++S
Sbjct: 436 QLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTS 477


>gi|21230642|ref|NP_636559.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769363|ref|YP_244125.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112226|gb|AAM40483.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574695|gb|AAY50105.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1046

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y 
Sbjct: 348 AQGQLVRNSNELSTASRYKSEFLANMSHELRTPLNSSLILAKLLADNKDHTLTAEQVKYA 407

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L+  T+ ++ ++  ++ +      +  ++++
Sbjct: 408 QAIHSSNNDLLALINDILDLSKIEAGHVELSDDTVAMSSVVQRLRDTFEPLARQKGLQLE 467

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D    +  V D QRL QI   +L+NA+ F+  G   +   +  NG   F V + G  
Sbjct: 468 ISADAAAPTQLVVDNQRLQQILKNLLANAIKFTEHGQVSLAVQSHGNGRVRFVVCDTGIG 527

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S
Sbjct: 528 IAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLALRMGGSISVDS 576


>gi|114319827|ref|YP_741510.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226221|gb|ABI56020.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 917

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 129/243 (53%), Gaps = 13/243 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYI 613
           L   NE L++ D +K+ FV  VS+ELR+PLT+I  F ++L ++    L+++Q  ++++ +
Sbjct: 666 LRRANERLKELDHLKDEFVSMVSHELRTPLTSIRAFGEILLSNP--ELDAEQRKEFLQVV 723

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L  L+N +LDL+ +++G  + +  T+ LN ++ E   +     H+  + ++V +
Sbjct: 724 VKESERLTRLINQVLDLSKIESGAAEWHLETLDLNQVVQEAADATRQIFHDTRVDLQVKA 783

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGS 728
             +      D  RL+Q+   +LSNA  F+   +     +V+  +AR        V++NG 
Sbjct: 784 PEQPTIITGDHDRLIQLVINLLSNAAKFTDPDNGRVEVSVVPVSAR---KLELRVQDNGP 840

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E   + +F++F  VS+   G+ +G GLGL+I +  ++ H G + + S      T  C
Sbjct: 841 GISEAEQRKIFDKFHQVSSQQAGKPKGSGLGLAICKLIMDAHSGDIRVESEPGAGATFIC 900

Query: 787 RIP 789
             P
Sbjct: 901 EFP 903


>gi|294506364|ref|YP_003570422.1| Sensory histidine protein kinase [Salinibacter ruber M8]
 gi|294342692|emb|CBH23470.1| Sensory histidine protein kinase [Salinibacter ruber M8]
          Length = 1987

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 143/281 (50%), Gaps = 17/281 (6%)

Query: 526  LEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            L   ++PL    NA+ ++   ++T+ VR ER L    +A  +A+ +K+S + ++S+E+R+
Sbjct: 1696 LRVHVVPLQGDTNAKGLMLAQDITEDVRKERELMSAKKAAEEANRMKSSLLANMSHEIRT 1755

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQ--------SQYVEYISASSTILLNLVNDILDLATVD 634
            PLT+I+GF ++++  + GSL             ++   I  S   L++ +  +L+L+ ++
Sbjct: 1756 PLTSILGFAEMIE-EETGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDTLTGVLNLSRLE 1814

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            AG M L    + L++   EV   +  +     +R++V + G+     AD   +  +   +
Sbjct: 1815 AGEMDLAAEPVDLSEQAREVADELRPRAEAEGLRLQVQAGGEPIWAQADGGGMQIVLRNL 1874

Query: 695  LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
            +SNA+ ++  G  + L+  R+NG  +  V+++G  +  +  + +F  F   A  G  R  
Sbjct: 1875 VSNAIKYTDDGE-IRLRVYRENGSAMIEVEDSGIGMDPEKIEDLFKPF-RQASEGMAREY 1932

Query: 753  -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL++    +    G + + +     TTI  ++P +E
Sbjct: 1933 EGTGLGLAVTREAVEQMNGSIEVETEKGKGTTIRVQLPKEE 1973


>gi|108761502|ref|YP_631002.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108465382|gb|ABF90567.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 1077

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 129/259 (49%), Gaps = 16/259 (6%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEAL-----------RKADEIKNSFVQHVSYELRSP 583
           + Q  +    V   +RA++ L  + E L            +A+ +K+ F+  VS+ELR+P
Sbjct: 652 DTQRQMGIATVGRDIRAQKRLEAERERLLARERVAREEAEEANRLKDEFLATVSHELRTP 711

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT ++G+  +L+T  L     K+ + +  +  ++     LV D+LD++ +  G +KL+ S
Sbjct: 712 LTAVLGWVQMLRTGTLPP--EKRERALATVERNARAQGQLVEDLLDVSRIMTGKLKLDVS 769

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           ++ ++ ++  V +S+        IRI+   D   G+ + D  RL Q+   +LSNA+ F+ 
Sbjct: 770 SVDVSQVVEAVLESLRPAAEAKGIRIQAALDSG-GTIMGDVSRLQQVVWNLLSNAVKFTP 828

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
           KG  V +   R N     +V + G  I       VF RF        R+  G+GLGL+IV
Sbjct: 829 KGGRVQVLVERRNSSVEITVADTGQGISPQFLPHVFERFRQADGSTTRKAGGLGLGLAIV 888

Query: 762 ESFINLHGGHVSISSSDEG 780
              + LHGG V  +S  EG
Sbjct: 889 RHLVELHGGTVMATSEGEG 907


>gi|56963601|ref|YP_175332.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909844|dbj|BAD64371.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 598

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 175/355 (49%), Gaps = 30/355 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFR---SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV      GRI L+NP      +L   EE +       + +  + +          L
Sbjct: 264 MADGVITLDRQGRILLTNPQAEEVLALLFYEEGQKPITGERKTLPVSLT---------PL 314

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++++  +E + L  +++  S +VL   + PL   +      +V  +V   R +TE+ 
Sbjct: 315 FEQVVSAEKEELQEL--SVQGRSMAVL---MAPLYAEE------HVRGAVAVVRDVTEE- 362

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S + ++ +  + I   S  
Sbjct: 363 ---RRHDKLRKDFIANVSHELRTPISMLQGYSEAM-VDGVTSSDEERKEVAQIIYDESLR 418

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVN++LDLA ++AG + LN   + L+  L  + +  A+   E ++ +++   G+   
Sbjct: 419 MGRLVNELLDLARMEAGYIDLNLEEVDLDSYLERITRKFASFAREYDVTVELAKPGRGQI 478

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            V D  R+ Q+ + ++ NA+  ++ G  + +   ++     F+V + G  IPE+    VF
Sbjct: 479 AVFDPDRIEQVLTNLIHNAIRHTNPGGLITVVHEQEEERDTFAVVDTGRGIPEEDLPYVF 538

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF     A   Q  G GLGL+I +  I+ H G +++ S     TT +  +P ++
Sbjct: 539 ERFYKADKARTRQHGGTGLGLAIAKHIIDAHQGKITVHSRLGEGTTFHFTLPKQQ 593


>gi|289207719|ref|YP_003459785.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix]
 gi|288943350|gb|ADC71049.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix]
          Length = 697

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 3/218 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K+ F+  +S+ELR+PL +I+GF+ L++  +   L  +Q + VE+I  S   LL L
Sbjct: 308 RANRAKSEFLSSMSHELRTPLNSILGFSQLMRADRTHPLPERQQRQVEHIERSGQHLLAL 367

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVA 682
           +NDILDL+ ++AG M ++         L E    I  +  E  I++     +  L +  A
Sbjct: 368 INDILDLSRIEAGRMAMSLEPTDPAMTLAECHGMIEGEARERGIQLDFPPPEPALPAVQA 427

Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  RL Q+   ++SNA+ ++  KG   +       G   F V++ G  IPED    +F  
Sbjct: 428 DHTRLKQVLLNLVSNAIKYNRDKGIVRVRVTPMPEGRMEFRVRDTGLGIPEDRRAELFRP 487

Query: 742 FVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F    H  G  +G G+GL I    +   GG +   S +
Sbjct: 488 FSRLGHETGAIQGSGIGLVISRELVRHMGGELEYQSRE 525


>gi|221196442|ref|ZP_03569489.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221203114|ref|ZP_03576133.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221177048|gb|EEE09476.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221182996|gb|EEE15396.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 653

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 9/220 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTILLN 622
           A+ +K+  +  VS+ELR+PL  I G+ ++L+     S++ +    Q V+ I  S+  L  
Sbjct: 273 ANRLKDELLATVSHELRTPLNVIYGWVEVLR-----SVDGQGFAQQAVDAIDRSARSLAR 327

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +V D+LD +++  G ++L  + + +  ++++  +      H   I +     G      A
Sbjct: 328 MVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITLVTEGAGTACVISA 387

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D +RL Q+ S +LSNA+ F+  G  +++  AR +     SV + G  +  +    +F+ F
Sbjct: 388 DAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVSLSVADTGQGMAPEALPHLFDPF 447

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              +NA    +RG+GLGLSIV +   LHGG V  +S   G
Sbjct: 448 NRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPG 487


>gi|144900532|emb|CAM77396.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 640

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 7/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+AL E  +   +A ++K+ F+  V +E+R+PL  I+G   LL  +    L+ +Q  + 
Sbjct: 140 AEQALREARDKAEEAAQVKSLFLATVGHEIRTPLNGILGMARLLLDTP---LDQRQKVFA 196

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E + +S  +LL LVNDILD + ++A  + L  ++  L +++ +++  +A +  +  + + 
Sbjct: 197 ETVVSSGELLLGLVNDILDFSRLEADGLTLETTSFDLLNMVEDIRLLMAPRAADKGLTLG 256

Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
                ++   V+ D  RL Q+   ++ NA+ F++ GS +I  A  +    + FSV + G 
Sbjct: 257 CRFPPEVQRQVSGDPLRLRQVLLNLVGNAIKFTANGSVMIAVAKEEASGMVRFSVSDTGI 316

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE+    +FN F        RR  G GLGL+I +  + L GG +   S+    T    
Sbjct: 317 GIPEEARDILFNEFSQADSSVARRYGGAGLGLAICKRLVTLMGGAIGFDSTPGSGTQFWF 376

Query: 787 RIP 789
           RIP
Sbjct: 377 RIP 379


>gi|302554553|ref|ZP_07306895.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302472171|gb|EFL35264.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1824

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 128/263 (48%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1346 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1405

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  + + 
Sbjct: 1406 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1465

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN------------ 716
            V +S     +   D QRLLQ+   +LSNA+ F+  GS  ++++ ARD+            
Sbjct: 1466 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQKIREQLLET 1525

Query: 717  --------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                    G   FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1526 GSLTDPDAGLIAFSVTDTGIGIASSKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1585

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1586 LLGGEIYAQSETGRGSTFTLYLP 1608


>gi|154491811|ref|ZP_02031437.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC
           43184]
 gi|154088052|gb|EDN87097.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC
           43184]
          Length = 628

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 134/239 (56%), Gaps = 7/239 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+ E   +A+++K++F+ ++S+E+R+PL  I+GFT+LL+  K  + + ++  +   I+
Sbjct: 393 LIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEKELT-DEEKDLFRNTIN 451

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S +LL L+NDIL+L+ +++G M   +    LN+LL E+ Q+    M  N   +K   +
Sbjct: 452 KNSNLLLKLINDILELSRIESGRMSFAFDDCSLNELLEEIYQTHHLLMPSNIRFLKEFQE 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPE 732
            +L   V DR R  Q+ +  ++NA+ F++KG  ++L A   ++  +    V++ G  + E
Sbjct: 512 TELIIHV-DRFRFTQVITNFINNAVKFTTKGH-ILLGAVYKKEEKEVHVFVEDTGKGMSE 569

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  K VF RF       Q  G GLGLSI ++      G +++SS +   +     IP +
Sbjct: 570 EAQKKVFERFFKVDEFAQ--GTGLGLSICQTIAERLEGRITLSSQEGKGSRFTLIIPCR 626


>gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341]
 gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341]
          Length = 925

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V +++ RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|156741627|ref|YP_001431756.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus castenholzii DSM 13941]
 gi|156232955|gb|ABU57738.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus castenholzii DSM 13941]
          Length = 391

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 18/318 (5%)

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           PGT  R +AA C  +  +     L    I  F      L G  ELL  S LE  ++   N
Sbjct: 90  PGTRERALAAGCDGFITKPIDPRLLPEQIAEF------LGGKRELLPTS-LETIMLREYN 142

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+       V    R  R L+ +N  L++ D +KN+F+  +S+ELR+PLT I+G+ +L +
Sbjct: 143 ARL------VERLERQVRELSARNAELQELDRLKNTFLATLSHELRTPLTAILGYLELFE 196

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              LGSLN  Q Q +  I+ ++  L  ++N++L L  V +   ++  + +V++++L EV 
Sbjct: 197 RRTLGSLNDVQGQAINVIARNARTLSRILNNLLYLQEVRS--TEIRRAPVVIHEVLQEVI 254

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +       N+ +   S      ++ D   + Q    ++ NA+ F+     V +    +
Sbjct: 255 EDMQPLARAANVTLSA-SLQPTAVYMGDPIGISQALRALIDNAIKFTPPSGRVDVTLIDE 313

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               +  V++ G  IP +  + +F  F  + +       G GLGL+I    +  HGGH++
Sbjct: 314 PSRVLVRVEDTGIGIPAEAQEKIFLPFYQIDDTLARPYSGAGLGLAIARHVVEAHGGHLT 373

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S  +  +T    +P +
Sbjct: 374 VRSVVQAGSTFTVVLPRE 391


>gi|319652279|ref|ZP_08006397.1| hypothetical protein HMPREF1013_03010 [Bacillus sp. 2_A_57_CT2]
 gi|317396102|gb|EFV76822.1| hypothetical protein HMPREF1013_03010 [Bacillus sp. 2_A_57_CT2]
          Length = 464

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           + +   E L+  DE + SF+ +VS++ +SPL NI G+ +LL+T KL +   +  +YV+ I
Sbjct: 226 SFSRMQEQLQHNDEARKSFINNVSHDFQSPLMNIQGYAELLQTQKLSA--EEHFEYVQII 283

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L NL   +L L ++D     +  S + L+D + E  +    ++ E  I +    
Sbjct: 284 DQESKRLSNLTKQLLLLTSLDQKSYPMKLSDVKLDDQIKETIRRHQWRLEEKEIEVSY-- 341

Query: 674 DGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             KL    F  D + L+ I+  +L+NA+ ++S G ++++  ++         K+ G+ I 
Sbjct: 342 --KLAPVIFKGDPELLVNIWDNLLTNAIKYNSHGGSILISLSQTESSIEVVFKDTGTGIS 399

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEG 780
           ED    +F+RF       ++ G GLGLSIV+  I LH G + ++S + +G
Sbjct: 400 EDAISQIFDRFYRVDSARKKDGTGLGLSIVKQIIELHTGEIRAVSQAGKG 449


>gi|256829206|ref|YP_003157934.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578382|gb|ACU89518.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1050

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 14/258 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T+    E  L    +A   A   K++F+ ++S+E+R+PL  I+G   LL +S   SL
Sbjct: 630 ADITERKAMELELVGVRDAALAASVAKSAFLANMSHEIRTPLNGIMGMLQLLDSS---SL 686

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q  YV     S   L  L++DILD++ ++AG + L      L ++   +    +   
Sbjct: 687 TEEQKNYVRMADVSGRRLTALLSDILDISRIEAGKLLLTERAFDLEEMRTSIITLFSIPA 746

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717
            E  I + V ++       + D  RL QI   ++ NA+ F+++G       +L +  DNG
Sbjct: 747 QEKGISLVVELAPDLPPRLIGDDLRLRQILFNLVGNAVKFTNEGFVQTQISLLSSQADNG 806

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
              +FSV+++G  I + +  ++F  FV       R  +G GLGL+IV   + + GG ++I
Sbjct: 807 CRLLFSVQDSGEGISDTLLPAIFEPFVQGEGSYVRYHQGAGLGLAIVGRLMRMMGGSLAI 866

Query: 775 SSSDEGVT---TINCRIP 789
            SSD G T   ++N RIP
Sbjct: 867 DSSDSGTTICFSLNFRIP 884


>gi|209695938|ref|YP_002263868.1| hybrid sensory histidine kinase BarA [Aliivibrio salmonicida
           LFI1238]
 gi|208009891|emb|CAQ80204.1| response regulator, histidine kinase VarS [Aliivibrio salmonicida
           LFI1238]
          Length = 929

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKTS    L+  Q  Y++ I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTS----LSDNQKDYLQTIERSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
            ++NDILD + ++AG + L        D L+EV   +A   HE  + I +  D ++ S  
Sbjct: 340 TIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDPRIPSGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ N++ F+ KG+  I ++    N DFI   F V++ G  I E    
Sbjct: 400 IGDPLRIQQVLNNLVGNSIKFTEKGNIDISIELKHLNDDFIDVQFVVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG + +SS
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEIGLSS 501


>gi|170728964|ref|YP_001762990.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169814311|gb|ACA88895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 948

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 122/231 (52%), Gaps = 9/231 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E  E        K+ F+  +S+E+R+P+  ++G   LL  ++L   +  Q  ++E  
Sbjct: 402 ALDEAREEAEATGRAKSEFLACMSHEIRTPMNGVLGMLSLLSRTEL---DQDQQHHLEIA 458

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             S+  LL L+NDILD + +++G + L      L+  L+E+ Q +A +  E ++ + + I
Sbjct: 459 QGSAKSLLTLINDILDFSKIESGKLNLESIEFNLHQTLDELIQPLAIRAQEKSLELTLDI 518

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSS 729
           S  K  +   D  R+ Q+ + ++ NA+ F+ KGS ++   L A  +N    FS+++ G  
Sbjct: 519 SQIKPANITGDPGRITQVLTNLIGNAIKFTPKGSIIVTGKLTAKNNNHRLTFSIQDTGIG 578

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           + +D  +++F  F    N+      G GLGLSI +   +L  G +S++S +
Sbjct: 579 MKQDKLENIFQAFSQADNSTTRHYGGTGLGLSIAKHLSHLMNGDISVTSKE 629


>gi|148657870|ref|YP_001278075.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148569980|gb|ABQ92125.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 1039

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 175/385 (45%), Gaps = 40/385 (10%)

Query: 425  LETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            LE +Y    + Q E    +D  SE +A+  PDG     N  F  ++ T   + + G  + 
Sbjct: 650  LEAQYQAADRAQSEMRAILDASSEAIALLAPDGTFLTVNRRFFDMFGTTAEQ-ALGHRLS 708

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDD----------ERKSLQGTLELLSDSVLEYSII 531
            ++ A     ++++D  +L+  +  +  D          +RK  Q  L + S  V   +  
Sbjct: 709  DMRAAIRWIFDDAD--ELYVRMCHALQDTQTIFRERVSQRKPQQRELAIFSSPVWTAN-- 764

Query: 532  PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                 QT L  + V   V  ERA+          + +K+ FV  VS+ELR+PLT+I G+ 
Sbjct: 765  -----QTHLGRLFVFRDVTHERAV----------ERMKSEFVAMVSHELRTPLTSIKGYV 809

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            D+L     G L  +  + +  + +++  LL L+ND+LD++ ++AG + L+   + L  L+
Sbjct: 810  DMLLDGDAGPLADEHQELLRIVKSNADRLLLLINDLLDMSRIEAGKLSLHRIPLDLRPLI 869

Query: 652  NEVKQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +V  ++   +     R+     +   DG       D  R  QI + +LSNA+ ++    
Sbjct: 870  RQVAATMRPHLDAKQQRLTLDLPETPPDGSAPLIAGDAARFHQILTNLLSNAIKYTPPNG 929

Query: 707  TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
             + ++   +      +V++ G  +  +    +F+RF    +R  R   G GLGL+I  S 
Sbjct: 930  EMTIRLTAEPPWLCITVQDTGIGMTPEEQDHIFDRFYRARNRATRETGGTGLGLAITRSL 989

Query: 765  INLHGGHVSISSSDEGVTTINCRIP 789
            + LH G +++ S     +T    +P
Sbjct: 990  VELHDGRITVESQPGKGSTFRVYVP 1014


>gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1459

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 12/231 (5%)

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            + F+  +S+E+R+P+  I+G   LL  +   SL+++Q  +V+ I   S +LL+L+NDILD
Sbjct: 825  SEFLATISHEIRTPINAIMGMAGLLLDT---SLDAQQRDWVQTIRYGSEVLLSLINDILD 881

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLL 688
             + +++  ++L  +   L  L+ E+   +A +    ++ +    D  L  + V D  RL 
Sbjct: 882  FSKIESQKLELEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRLR 941

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRF 742
            QI + +LSNA+ F+ +G  V+   A++           F V++ G  IP +    +F  F
Sbjct: 942  QILANLLSNAIKFTPQGEVVVTVEAQEQDPQAQVQWVSFQVQDTGIGIPPEKQDRLFKPF 1001

Query: 743  --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              V ++   Q  G GLGL+I +    L GG + + S     +T   RIP K
Sbjct: 1002 SQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQPGQGSTFGFRIPLK 1052


>gi|313682906|ref|YP_004060644.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155766|gb|ADR34444.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 722

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 14/235 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE     K EA+  A+++K+ F+ ++S+E+R+PL ++IGF+DLL+         KQ QY+
Sbjct: 232 AEDLKMAKEEAV-SANQLKSEFLANMSHEIRTPLNSVIGFSDLLEQE---VKEPKQVQYL 287

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I      LL+L+N+ILDL+ +++G MK+    +     L E+         +  + + 
Sbjct: 288 HAIKNGGKALLSLINNILDLSKIESGHMKVELHPLHFKPFLREIMNMFIEPGKKKGLEVT 347

Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG--DFIFSVK 724
              +  L  + +AD  R+ QI   ++SNA+ F+ KGS   +V+   +++ G  D IFS+K
Sbjct: 348 YEIEKNLPEWIIADEIRIRQILFNLISNAIKFTEKGSVRLSVLSTPSKNEGFVDLIFSIK 407

Query: 725 NNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  I P++  K +F+ F+ N  +  R+  G GLGL+I      L  G ++I S
Sbjct: 408 DTGIGISPKNQIK-IFDAFIQNDGQDSRQFGGTGLGLAICRKLAQLMKGDITIES 461


>gi|218258256|ref|ZP_03474658.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM
            18315]
 gi|218225599|gb|EEC98249.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM
            18315]
          Length = 1131

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 130/235 (55%), Gaps = 12/235 (5%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++TD       +  +N+A  +A+ +K++F+ ++S+E+R+PL  I+GF++L+    +    
Sbjct: 888  DITDLKMTNELIRLRNKA-EEANRLKSAFLANMSHEIRTPLNAIVGFSNLIA---MAEEP 943

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +  +YV+ I  ++ +LL LVNDILDL+ ++AG M  NYS + L+++ N ++Q   +++ 
Sbjct: 944  DEIGEYVKIIETNNELLLQLVNDILDLSKIEAGQMDFNYSAVDLSEIFNNLQQVYKSRVK 1003

Query: 664  ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +    + ++      + V  +++ RL Q+ S  LSNA  ++S+GS + +   R      F
Sbjct: 1004 DG---VDLVCHLPSVACVIHSEKNRLTQVLSNFLSNACKYTSEGS-ITMGYERIGAILRF 1059

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V + G  + E+    VF RF       Q  G GLGLSI ES I    G + + S
Sbjct: 1060 YVADTGKGLAEENIPHVFERFAKFDSFVQ--GTGLGLSICESIIQSLDGKIGVDS 1112


>gi|154491483|ref|ZP_02031109.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184]
 gi|154088472|gb|EDN87517.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184]
          Length = 1041

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 130/235 (55%), Gaps = 12/235 (5%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++TD       +  +N+A  +A+ +K++F+ ++S+E+R+PL  I+GF++L+    +    
Sbjct: 798  DITDLKMTNELIRLRNKA-EEANRLKSAFLANMSHEIRTPLNAIVGFSNLIA---MAEEP 853

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +  +YV+ I  ++ +LL LVNDILDL+ ++AG M  NYS + L+++ N ++Q   +++ 
Sbjct: 854  DEIGEYVKIIETNNELLLQLVNDILDLSKIEAGQMDFNYSAVDLSEIFNNLQQVYKSRVK 913

Query: 664  ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +    + ++      + V  +++ RL Q+ S  LSNA  ++S+GS + +   R      F
Sbjct: 914  DG---VDLVCHLPSVACVIHSEKNRLTQVLSNFLSNACKYTSEGS-ITMGYERIGAILRF 969

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V + G  + E+    VF RF       Q  G GLGLSI ES I    G + + S
Sbjct: 970  YVADTGKGLAEENIPHVFERFAKFDSFVQ--GTGLGLSICESIIQSLDGKIGVDS 1022


>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1369

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 121/257 (47%), Gaps = 21/257 (8%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L E  E    A   K+ FV ++S+E+R+P+  +IG  +LL  +    L 
Sbjct: 608 DITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDT---PLT 664

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y   I +S   LL ++NDILD + ++AG + L      ++  + EV   +A + H
Sbjct: 665 PEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAH 724

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------------L 710
              +  I  I  G       D  RL Q+ + ++ NA+ F+ +G  V+             
Sbjct: 725 AKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSASLSKEEKKKSA 784

Query: 711 KAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            A    G  +  F VK++G  I E+  K +F  F        RR  G GLGL+I    + 
Sbjct: 785 PAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVE 844

Query: 767 LHGGHVSI-SSSDEGVT 782
           + GG + + SS  EG T
Sbjct: 845 MMGGEIGLKSSPKEGST 861


>gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 1196

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 7/236 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E L ++ + K+ F+ ++S+ELR+PL +I+  + L+  +K   L+ +  +Y E I +S 
Sbjct: 518 KAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENK--ELDKEYIEYAEVIQSSG 575

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+++ILDL+ ++AG MKL ++ + + ++  +++   +      N+ + +  +  +
Sbjct: 576 QGLLGLIDEILDLSKIEAGKMKLEFTDVNITEVATDMRSLFSPLAKNKNLDLVIDVESDI 635

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
                DR RL QI   +LSNA+ F+S G   +     D G  I F V + G  IP D   
Sbjct: 636 SGINTDRMRLEQILKNLLSNAIKFTSTGKVALTVKQDDAGKAILFKVTDTGIGIPLDKQG 695

Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  F   A    RR   G GLGLSI      L GG + ++S +   +     +P
Sbjct: 696 LIFEAF-QQADGSTRRKFGGTGLGLSISRELSKLLGGEIELTSKENVGSEFTLALP 750


>gi|254413753|ref|ZP_05027522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196179350|gb|EDX74345.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1022

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 9/228 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA   A+  K+ F+ ++S+ELR+P+  I+GFT L++  +  SL ++   Y+E I+
Sbjct: 544 LQQAKEAADAANRAKSEFLSNMSHELRTPMNAILGFTQLMQRDQ--SLPAQHQGYMEIIN 601

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+ND+L+++ ++AG + L      L+ LL  ++     K     +R++V  D
Sbjct: 602 HSGEHLLELINDVLEMSKIEAGRITLAEIDCNLHQLLRRLESMFQLKAKSKGLRLRVQRD 661

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSI 730
             +  ++  D  +L Q+   +LSNA+ F+  G   +  +    G  +   F V + G  I
Sbjct: 662 DTVPQWIRTDEHKLRQVLINLLSNAIKFTENGQVTLEVSGVRQGKTVNLGFKVADTGPGI 721

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            ++    +F  F      GQ    G GLGL I + F+ L GG ++I+S
Sbjct: 722 AKEDRNELFQAF-KQTKLGQNTYEGTGLGLKISQKFVQLMGGEITITS 768


>gi|60680057|ref|YP_210201.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491491|emb|CAH06243.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 411

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 134/242 (55%), Gaps = 8/242 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q +LT  ++T+    +R L  + E    A+++K++F+ ++S+E+R+PL  I+GF+ LL +
Sbjct: 160 QMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS 219

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +     ++++  Y++ ++ ++  LL +V D+LDL+ +++G +  +YS   +NDLL  +  
Sbjct: 220 A---DDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHG 276

Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +  ++ ++   IK+I       ++  +++ R++QI + ++ NAM F+  G        +
Sbjct: 277 ILNIRL-KDKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQ 335

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +  F V + G  IP      +F+RF    H  +  G GLGL++ ++ +   GG + +
Sbjct: 336 GEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQNLGGEMGV 393

Query: 775 SS 776
            S
Sbjct: 394 ES 395


>gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1002

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 173/385 (44%), Gaps = 50/385 (12%)

Query: 430 NTLVKVQG--ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           NTL + QG    +D+L++G+ V    G+I   NPAF ++     + L+        A T 
Sbjct: 405 NTLAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAM-----HGLT--------ATTL 451

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVT 546
           + +Y E   + L   I  +     +     + L  D +           Q + T +   T
Sbjct: 452 NGHYQELPIFGLADLIERTRSHPGEVFAADVALAKDRI----------GQAVGTAIFKRT 501

Query: 547 DSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS---- 597
           D+  A        L     A ++ D++K  F+  VS+ELR+PLT+++GF  +++      
Sbjct: 502 DTKEAAACFGSALLIRDVTAEKEIDKMKTDFISTVSHELRTPLTSVLGFASIIQEKLQTD 561

Query: 598 ----------KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
                     KL     +    +  I + +  L +L+ND+LD+A ++AG ++     I  
Sbjct: 562 VFPVLSTEDRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPINP 621

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +LL+    S A     N +++    +  L   + DR RLLQ+   ++SNA+ F+  GS 
Sbjct: 622 GELLDWAANSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFTEFGS- 680

Query: 708 VILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
           V  +  +D      SV + G  I PED  K VF +F  V +    + +G GLGL I +  
Sbjct: 681 VTCRVKQDKDGVCISVIDTGVGIAPEDQPK-VFEKFRQVGDTLTDKPKGTGLGLPICKQI 739

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +  HGG + + S     +  + +IP
Sbjct: 740 VEHHGGRIWVESEPGHGSVFSFQIP 764


>gi|115523889|ref|YP_780800.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115517836|gb|ABJ05820.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 615

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 134/259 (51%), Gaps = 3/259 (1%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P+ + +    +VTD  + E AL +      +AD  ++ F+  VS+ELR+PL  IIGF+++
Sbjct: 319 PDTEVVAVMRDVTDRKQQELALEQARAEAARADASRSRFLATVSHELRTPLNAIIGFSEM 378

Query: 594 LKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +   +   +++ ++ +Y + I+ S   LL++VN ILD++ +D+G  ++          L 
Sbjct: 379 IVQEQALMISAERRREYAQLINDSGQHLLSVVNGILDMSKMDSGNFEILPEPFAPRPALL 438

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                +A K  ++ I +   +   L     D +   QI   ++SNA+ F+ +G TV + A
Sbjct: 439 NCCNLLALKARDSGIDLVTRAPDDLPEVNGDPRAFKQIVLNLVSNAIKFTERGGTVTVSA 498

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           A +       V + G  I  D  + + + F       QRR  G GLGLSIV++ + LHGG
Sbjct: 499 AVEGAHLALRVVDTGVGIAADDLERIGDPFFQAGKTYQRRHEGTGLGLSIVKTLVALHGG 558

Query: 771 HVSISSSDEGVTTINCRIP 789
            ++++S  +  TT+   +P
Sbjct: 559 ELTVASQLDKGTTVTAMLP 577


>gi|254228144|ref|ZP_04921573.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262393930|ref|YP_003285784.1| putative sensor/response regulator hybrid [Vibrio sp. Ex25]
 gi|151939217|gb|EDN58046.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262337524|gb|ACY51319.1| probable sensor/response regulator hybrid [Vibrio sp. Ex25]
          Length = 566

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 15/245 (6%)

Query: 557 EKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           E+   LRK    +++    FV  +++ELR+PL  ++G  +LL  ++LG    +Q  Y+  
Sbjct: 189 EREVELRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQLGE---EQRHYLNN 245

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++ S  +L  ++ND+LD + ++AG+M++        +L   +    + K  E  I   + 
Sbjct: 246 LTQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWEELEKAIMGVFSAKAAEKRIHFSI- 304

Query: 673 SDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            D KLG     V D +R+ QI   ++ NA+ F+  G  V+L+    NG   F V++ G  
Sbjct: 305 -DKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGG-VVLRVEWINGIAHFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +   S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPIEAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422

Query: 788 IPSKE 792
           IP KE
Sbjct: 423 IPLKE 427


>gi|86146268|ref|ZP_01064593.1| hypothetical protein MED222_16191 [Vibrio sp. MED222]
 gi|85835979|gb|EAQ54112.1| hypothetical protein MED222_16191 [Vibrio sp. MED222]
          Length = 565

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 135/261 (51%), Gaps = 10/261 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFT 591
            +Q +L    +  ++  + A+    E+ ++A+E + +   FV  +++ELR+PL  ++G  
Sbjct: 168 QSQLLLVTDLICSALTHQLAINRNIESRKRAEESERATRDFVAMINHELRTPLNGLLGSA 227

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +L+  ++L   +S Q + V  +S S   L  ++ND+LD + ++AG+++L   T  L DL 
Sbjct: 228 ELISDTEL---SSSQREIVNNLSQSGEFLRTIINDLLDYSKINAGMLELIPKTFALQDLK 284

Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           N +      +  E  I+  V ++DG    F  D +R+ Q+F  ++ NA+ F+ +G  V +
Sbjct: 285 NTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVNLIGNAIKFTDQGH-VSV 343

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
           +    N  FIFSV+++G  I +   K++F  F    +   R   G GLGL+I      L 
Sbjct: 344 EIKWLNDQFIFSVEDSGVGIAQSAIKTLFEPFTQADNSSSRNYEGTGLGLAICRKLAALM 403

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G + +SS     TT    +P
Sbjct: 404 RGDIEVSSIVGSGTTFTISLP 424


>gi|307823560|ref|ZP_07653789.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307735545|gb|EFO06393.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 966

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 128/236 (54%), Gaps = 18/236 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
           L E  +    AD+ K+ F+  +S+E+R+P+  IIG T L L+T     L +KQ  Y+  +
Sbjct: 288 LAEARDQAIAADKSKSEFLSMMSHEIRTPMNAIIGMTRLALQTD----LTAKQQDYLTKV 343

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS  LL ++NDILD + ++AG ++L      L+D+LN++   ++ K  E  ++I+ I+
Sbjct: 344 QISSRALLGIINDILDFSKIEAGKLELETIAFNLDDVLNDLFSLMSGKAEEKGLKIRFIT 403

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFI---FS 722
              + S  + D  RL Q+   +++NA+ F+S+G  V +K A   G       D I   FS
Sbjct: 404 ADDVPSDLIGDPLRLGQVLLNLVNNAVKFTSRGGDVDIKVALAEGAEQVKSADQIRLEFS 463

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           VK+ G  +  +    +F  F        R+  G GLGL+I +  +++ GG ++++S
Sbjct: 464 VKDTGIGLTTEQIGGLFQSFNQADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNS 519


>gi|117620577|ref|YP_856843.1| PAS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561984|gb|ABK38932.1| PAS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1307

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 7/249 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  V  E+AL   +E   +A   K  F+  VS+E+R+P+  I+G  + L  +   SLN
Sbjct: 737 DVTTRVEQEQALQASHERAEQAVLAKGRFLAAVSHEIRTPMNAILGLLEWLSHT---SLN 793

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q   + ++  +   LL L+ND+LD +  +   + L+     L DL   V     +K  
Sbjct: 794 AEQRSALAHVRQAGDELLGLLNDVLDFSRNENRQLALSLQPTDLVDLCEHVAAVHWSKAR 853

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +++++  D +L + V  D  R+ Q+   +L+NA+ FSS+G  V+L A R     +  
Sbjct: 854 SKRLQLRLDLDHRLPAQVELDPHRVQQVLHNLLANAIKFSSRGE-VVLWARRAGSQLLCG 912

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  ++   +F  F      GQ R  G GLGL+I    +   GG + +     G
Sbjct: 913 VDDEGPGISAELLPRLFLPFEQGGEAGQPRAQGTGLGLAICRQLMEQMGGEIRVEPRPTG 972

Query: 781 VTTINCRIP 789
            +   C +P
Sbjct: 973 GSRFLCALP 981


>gi|260771912|ref|ZP_05880830.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
 gi|260613204|gb|EEX38405.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
          Length = 929

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPLGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V +++ RD+  +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDMVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVGQMGGEISLTS 502


>gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 927

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LTNSQADYLQTIEKSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + + +  D K+    
Sbjct: 340 NIINDILDFSKLEAGKLALENIPFEFQETLEEVVSLQATSAHEKGLELTLKVDPKIPAGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V L++ +++  +  F V++ G  I E    
Sbjct: 400 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDAVELQFMVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501


>gi|186684843|ref|YP_001868039.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186467295|gb|ACC83096.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1123

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 177/383 (46%), Gaps = 44/383 (11%)

Query: 430 NTLVKVQG--ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH---IRNIA 484
           NTL + QG    +D+L++G+ V    G+I   NPAF +++      L        I  +A
Sbjct: 526 NTLAEAQGLNAILDNLADGLLVADTAGQITHFNPAFLTMYGLTATALKGHYRELPISGLA 585

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
              +R   +S   ++F+A + +   ER        +   +V +    PL    + L   +
Sbjct: 586 ELVAR--TQSHPEEVFSAEV-ALTKERIGQAVATAIFKKTVEQE---PLACFGSALLIRD 639

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS------- 597
           +T              A ++ D++K  F+  VS+ELR+PLT+++GF  ++K         
Sbjct: 640 IT--------------AEKEIDKMKTDFISTVSHELRTPLTSVLGFASIIKEKLETDVFP 685

Query: 598 -------KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
                  KL     + +  +  I + +  L +L+ND+LD+A ++AG ++     +  ++L
Sbjct: 686 IISTEDRKLQKTIKRVADNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPLDPSEL 745

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L+    S A     N +++    +  L   V DR RLLQ+   ++SNA+ F+  G  V  
Sbjct: 746 LDWATNSTAGLFETNGLQLVSEIEPGLPQIVGDRNRLLQVLINLISNAVKFTESGC-VTC 804

Query: 711 KAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           +  + +     SV + G  I PED  K VF +F  V +    + +G GLGL I +  I+ 
Sbjct: 805 RVKQGHDGVCISVIDTGIGIAPEDQPK-VFEKFRQVGDTLTDKPKGTGLGLPICKQIIDH 863

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           HGG + + S     +  +  IP+
Sbjct: 864 HGGRIWVESEPGKGSVFSFIIPT 886


>gi|298376398|ref|ZP_06986353.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266276|gb|EFI07934.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 524

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 159/328 (48%), Gaps = 42/328 (12%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536
           F  I+   D ER  +QG  +++   + EYSI                  P         A
Sbjct: 196 FCEIVYPEDRERVLVQGFEKIVMGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 255

Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586
           + +   +++TD +        AER    K   L KA E   +K+ F+ ++S+E+R+PL  
Sbjct: 256 KILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNA 315

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF ++L          ++  YV+ I  +S +LL L+ DILD + ++AG   +      
Sbjct: 316 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 374

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++  E     A K+ + N+R       +  +  +D +R++Q+ S  L+NA+ F+S+G 
Sbjct: 375 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 433

Query: 707 -TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764
             +  K ++D  +   SV + G  I E+ C+++F+RFV  NA    ++G GLGL+I ++ 
Sbjct: 434 IKLAYKVSKD--EIRVSVSDTGMGISEEDCRTIFDRFVKLNAC---KQGTGLGLAICKNI 488

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           I   GG + + S+    +T    +P KE
Sbjct: 489 IEKLGGRIGVESTLGVGSTFWFTLPLKE 516


>gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 932

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G+  I    R    D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|319654425|ref|ZP_08008512.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
 gi|317393924|gb|EFV74675.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
          Length = 465

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 5/212 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +N F+  +S+ELR+PLT I G+ D++    L      + +Y+  I   +  L +L+ D+ 
Sbjct: 235 RNDFLASISHELRTPLTYIKGYADIVHKRNLSI--EDRDKYLNIIHEEANRLSDLIKDLF 292

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +D     +    I L D + +++Q  +    E  + + VI   K    +AD  RL 
Sbjct: 293 DLAKMDKNSFVIQKRPIDLTDFILKIEQKFSPAFQEKEMELDVIC-PKEAVIIADPTRLE 351

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           QI   +L NA+ +S  G+  IL       D    V++NG  IPE+    + NRF  V  +
Sbjct: 352 QIIFNLLDNAIKYSPPGAKTILSVNNKKKDVYIKVRDNGKGIPEEDLPYILNRFYRVDKS 411

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
                 G GLGL+IV+  +  HGG VS+ S +
Sbjct: 412 RTRSLGGTGLGLAIVKELVLAHGGTVSVRSKE 443


>gi|298675082|ref|YP_003726832.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288070|gb|ADI74036.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 677

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 15/276 (5%)

Query: 528 YSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKAD-------EIKNSFVQH 575
           Y I+PL + +     +++   ++T     E  L +  + L+KA+       E+KN F+ +
Sbjct: 400 YKIVPLGDEEGNVNESIIALDDITQRKETETQLLKYYDDLQKANRELKSLSEMKNRFISN 459

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+P+TNI G+++LL   KLG LN KQS+ V  IS S   L  L++ ++ +  +++
Sbjct: 460 VSHELRTPITNIKGYSNLLNNKKLGELNDKQSKAVSVISQSCERLRWLIDTLIHINILES 519

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
                +   I L+ LLN V    +    +  + +    D  L    A+ + L Q+F  IL
Sbjct: 520 DNGIQHTQKISLSSLLNNVVSENSVYFFDKGLNLTTNIDSNLPLVDANPEYLEQVFVHIL 579

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
            NA  F+  G  V + A  D+G+    V +NG  I E+   ++F+ F       +RR  G
Sbjct: 580 DNACKFTPSGGKVDVHAF-DDGNLHIIVSDNGIGIDEESANNIFDLFYQKDDSSKRRYSG 638

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G G+   +  I  H G++ + S  +  T ++  +P
Sbjct: 639 TGAGMYFCKKIIEKHHGNIWVESKIKEGTDVHIILP 674


>gi|298482954|ref|ZP_07001136.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270926|gb|EFI12505.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 621

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 137/255 (53%), Gaps = 10/255 (3%)

Query: 524 SVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +VL  +  P  N   ML    ++T+    ER L    E   +AD +K++F+ ++S+E+R+
Sbjct: 360 NVLVRNYQPQDNIIEMLCINFDITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRT 419

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL+ +       ++  Y   I  ++ +LL L++DILDL+ ++AG   +  
Sbjct: 420 PLNAIVGFSSLLEEA---EDAEEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIP 476

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    L NE+ QS+  +  E  + I +  +    +F +D+ RL Q+    ++NA+ F+
Sbjct: 477 EQVDAQQLCNELLQSMQVRATE-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFT 535

Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           S+GS VI    R NG+ + FSV++ G  I  +  +++F RFV         G GLGL I 
Sbjct: 536 SEGSIVI--DYRINGNEVRFSVQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPIC 591

Query: 762 ESFINLHGGHVSISS 776
           +S +   GG + + S
Sbjct: 592 QSIVTQLGGKIGVES 606


>gi|255015126|ref|ZP_05287252.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 512

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 159/328 (48%), Gaps = 42/328 (12%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSI---------------IPLP--------NA 536
           F  I+   D ER  +QG  +++   + EYSI                  P         A
Sbjct: 184 FCEIVYPEDRERVLVQGFEKIVMGEIGEYSIQYRQLFEGQYVWVRAYAYPYKYDEAGRPA 243

Query: 537 QTMLTFVNVTDSVR-------AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTN 586
           + +   +++TD +        AER    K   L KA E   +K+ F+ ++S+E+R+PL  
Sbjct: 244 KILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEANRLKSMFLANMSHEIRTPLNA 303

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF ++L          ++  YV+ I  +S +LL L+ DILD + ++AG   +      
Sbjct: 304 IVGFANIL-AETKEIEEEEREFYVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFD 362

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++  E     A K+ + N+R       +  +  +D +R++Q+ S  L+NA+ F+S+G 
Sbjct: 363 FKEICEETYAVHALKIPK-NVRFVFDRGSQPVTVFSDPKRVVQVISNFLTNAIKFTSEGE 421

Query: 707 -TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764
             +  K ++D  +   SV + G  I E+ C+++F+RFV  NA    ++G GLGL+I ++ 
Sbjct: 422 IKLAYKVSKD--EIRVSVSDTGMGISEEDCRTIFDRFVKLNAC---KQGTGLGLAICKNI 476

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           I   GG + + S+    +T    +P KE
Sbjct: 477 IEKLGGRIGVESTLGVGSTFWFTLPLKE 504


>gi|298528358|ref|ZP_07015762.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512010|gb|EFI35912.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1012

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 180/374 (48%), Gaps = 42/374 (11%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D   + + + GPDG I   NP   S++      +  G  + ++ A   RY+ +       
Sbjct: 447 DSAHDAIIMMGPDGEISYWNPMAESIFGYTAQEVM-GKSLHHLLAP-ERYHTD------- 497

Query: 501 AAIITSFDDERKSLQG-----TLELLSDSVLEYSIIPLPNAQTMLTFV------------ 543
             I  +  + +++ QG     T+EL   S +    + +P + +M + +            
Sbjct: 498 --ITKAMPEFQRTGQGNAVGKTIEL---SAIGKDGLEIPISLSMSSVLLQGRWHAVGIAR 552

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++    AE+ L +  E    A+  K+ F+ ++S+ELR+P   I+G   LL+T+    LN
Sbjct: 553 DISRRKAAEKELIQAKEQAEAANIAKSKFLANMSHELRTPFNGIMGMMQLLQTT---DLN 609

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V     SS   + L+ DIL+L+ ++AG M +  +     +LL  +    + +  
Sbjct: 610 DEQQEFVNLAIQSSERFVRLLTDILELSNIEAGKMSICSAEFRTGELLESLSDLFSAEAL 669

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNG 717
           +  I ++   +  +   V+ D+ R+ Q+   ++ NA+ F+  GS     T I  A   + 
Sbjct: 670 KKGIVLEFSMEPDVPEQVSGDKTRVKQVMFTLVGNALKFTESGSVQVHLTSISGAKGGDT 729

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              FSV + G  IP+D   ++FN FV    ++  + +G GLGLS+V+  +++  G++S+ 
Sbjct: 730 RLKFSVSDTGIGIPDDKLSTLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDMMNGNISVE 789

Query: 776 SSDEGVTTINCRIP 789
           S  +  TT++  +P
Sbjct: 790 SEVDRGTTVHVVLP 803


>gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
 gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
          Length = 1594

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 135/253 (53%), Gaps = 9/253 (3%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++TD   A+ AL  +  + ++A+E K+ F+  +S+E+R+P+  +IG  DLL+ +   +L
Sbjct: 940  LDITDEKDAQAALERETLSAKQANEAKSRFLATMSHEIRTPMNGVIGMVDLLRET---NL 996

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +  Q   V  I  SS  LL ++NDILD + +++G M+L+ + + + +L+ +   ++    
Sbjct: 997  SRDQVNMVSTIRDSSFSLLEIINDILDFSKIESGQMELDLTDVNILNLVEKTLDALWVNA 1056

Query: 663  HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGD 718
            H+ ++ + + + D    S + D  R  Q+   +L NA+ F++   +   V +      G+
Sbjct: 1057 HQKDVGLYLEVEDNLPESLLLDPVRTRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTEGE 1116

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +V++NG  + +D  + +F  F        R+  G GLGLSI +SF+ L GG + ++S
Sbjct: 1117 LRIAVEDNGVGMTQDQLERLFKPFTQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVTS 1176

Query: 777  SDEGVTTINCRIP 789
                 +     IP
Sbjct: 1177 KHHHGSRFTFTIP 1189


>gi|220926141|ref|YP_002501443.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219950748|gb|ACL61140.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1839

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 19/257 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ +Q ++
Sbjct: 1140 QARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLSENPDGNLSERQVEF 1199

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  + T LLNL++DILDL+ +++G + +    I   +LL    +    +     +  
Sbjct: 1200 ARTIHGAGTDLLNLISDILDLSKIESGTVSVEAEEISFANLLAATARPFRHEAENRRLAF 1259

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---------- 719
             V    +LG+ + D +RL Q+   +LSNA  F+ +G  V L+ A   G +          
Sbjct: 1260 DVEVAPELGTLITDSKRLQQVLKNLLSNAFKFTEQGG-VRLRVAPAAGGWSADHPILRQA 1318

Query: 720  ----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
                 F V + G  IP +  K +F  F   A  G  R   G GLGL+I     NL GG +
Sbjct: 1319 PMVVAFEVSDTGIGIPPEKQKIIFEAF-QQADAGTSRKYGGTGLGLAISRELANLLGGEI 1377

Query: 773  SISSSDEGVTTINCRIP 789
             + S+    +T    +P
Sbjct: 1378 QLRSASGVGSTFTLYLP 1394


>gi|73668223|ref|YP_304238.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72395385|gb|AAZ69658.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 445

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 138/252 (54%), Gaps = 9/252 (3%)

Query: 547 DSVRA-ERALTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+R+ E  +  KNE L+   +I      KN  + ++++ELR+PL ++IGF+DLL     
Sbjct: 189 ESLRSLEEKIELKNEFLKAKKDIDASNWAKNGLIVNMNHELRTPLNSVIGFSDLLLEGAF 248

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           GSLN++QS+YV  I  S   LL +++++LD++ ++AG   LNY  + +  LL EV+ S+ 
Sbjct: 249 GSLNTRQSKYVSNILISGKNLLEIISNLLDISRLEAGEKNLNYEDVDIASLLGEVRMSLL 308

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +      + I++  D  L +  ADR +L QI   +++NA+  + +   V + A +  G  
Sbjct: 309 SFASSKKVSIEIKVDASLENIRADRTKLRQILYSLMNNAIKLTPEKKKVTVSALKKEGML 368

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V ++G  + ++  + +   F+    +      G GLGL I ++FI++HGG + + S 
Sbjct: 369 EIKVSDSGIGLSKEDHERMLMPFIQADLSTTSGYGGTGLGLYIAKNFIDIHGGKIWVESK 428

Query: 778 DEGVTTINCRIP 789
               +T    +P
Sbjct: 429 GGKGSTFIFTLP 440


>gi|254411776|ref|ZP_05025552.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181498|gb|EDX76486.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 968

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 132/252 (52%), Gaps = 13/252 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   +AE  + +  E  R+  E+++SFV  VS+E R+PLT I+  ++LL        +
Sbjct: 718 DITPLKKAEAEIIKALEKERELSELRSSFVSLVSHEFRTPLTAILSSSELLDRYSKKLTD 777

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN------DLLNEVKQS 657
            K+  + + I  + + +  L++D+L +   +AG  KL +    +N      D+++ ++ S
Sbjct: 778 EKKKAHHQRIQIAVSRMTQLLDDVLTIGKAEAG--KLTFKPASMNLIAFCQDIVDTLQMS 835

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I+ +       I  +  G  G    D + L  I + ++SNA+ +SS+GS V ++   +  
Sbjct: 836 ISQQHS-----INFVCHGDCGDAQMDEKLLQHILNNLISNAIKYSSQGSEVKVELTCEGE 890

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             IF +++ G  IP +  K +F+ F    + G  +G GLGL+IV+  ++LHGG +++ S 
Sbjct: 891 SAIFHIQDQGIGIPPEDIKKLFSSFQRAGNVGTIQGTGLGLAIVKKCVDLHGGLITVESE 950

Query: 778 DEGVTTINCRIP 789
               TT    +P
Sbjct: 951 VGKGTTFTIILP 962


>gi|158337403|ref|YP_001518578.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158307644|gb|ABW29261.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 790

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 11/229 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  I+GF+ LL+      +   Q + ++ I+ S T LL L+NDIL
Sbjct: 341 KSEFLSNMSHELRTPLNAILGFSQLLQQDP--QIPPHQQKQLDIINQSGTHLLALINDIL 398

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           +++ ++AG   L  S I L +LL+ VK  +  K     +  + +    L  F+  D  ++
Sbjct: 399 EMSKIEAGFSTLKQSPIELQELLDSVKAMMELKATAKQLGFEFVYSPALPQFIEVDAGKV 458

Query: 688 LQIFSKILSNAMDFSSKGST-----VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFN 740
            QI   +LSNA+ F+ KG        I  A+  +G     F+VK+ G  I  +  + +F 
Sbjct: 459 RQILMNLLSNAIKFTQKGYVSLTVDAIYPASDSSGLMQLRFAVKDTGLGIAPEEIEQLFT 518

Query: 741 RFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            FV  A  R  + G GLGL++   F  L  G +++ S  +  +T  C I
Sbjct: 519 PFVQTASGRITQMGTGLGLALSRKFAQLMKGDITVDSVVDQGSTFTCWI 567


>gi|197118913|ref|YP_002139340.1| sensor histidine kinase lipoprotein [Geobacter bemidjiensis Bem]
 gi|197088273|gb|ACH39544.1| sensor histidine kinase lipoprotein, CHASE, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 829

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 129/239 (53%), Gaps = 8/239 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   NE L++ D +K+ F+  +S+ELR+PL ++IG++ ++    LG L   Q + +  + 
Sbjct: 581 LAAANEKLKEVDRLKSMFIASMSHELRTPLNSVIGYSSIILNEWLGPLQPTQKENLAIVL 640

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL+L+ND++D++ ++AG ++++     L DL+ E  Q +  ++    +   V + 
Sbjct: 641 RAGKHLLSLINDVIDVSKIEAGQIEVHNEEFDLFDLVQEAAQQLEPEIRGKGLAFPVTNI 700

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
                 +ADR+RLLQ    +LSNAM ++ +GS  I  A   +G +   SV ++G  I E 
Sbjct: 701 HL--QLLADRRRLLQAVLNLLSNAMKYTVEGS--IQLAVNFDGTWAEISVADSGIGISEQ 756

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTTINCRIP 789
             K VF  F  + ++ RG   G GLGL +    +  + GG ++  S+    +T   RIP
Sbjct: 757 DAKLVFQPFRRLDSSLRGTVSGTGLGLYLTNKLVREVLGGTITFVSAVGQGSTFTIRIP 815


>gi|220910672|ref|YP_002485982.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219867444|gb|ACL47781.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 810

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +K +    A+  K++F+ H+S+ELR+PL  I+GF  +++   L  L  +Q + +  
Sbjct: 335 RQLEQKAQEAEAANHAKSAFLAHMSHELRTPLNAILGFAQVMERDPL--LTHQQQESLAI 392

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LL L+ND+L+++ ++AG + L+     L++LL  ++     +     + + V 
Sbjct: 393 INRSGEHLLGLINDVLEMSKIEAGQIVLHPGAFDLHELLQTLRDMFQGRAEAKQLALNVN 452

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727
               L  +V +D  +L Q+   +LSNA+ F+ +G TV L+AA  +        F+V + G
Sbjct: 453 LAADLPRYVISDEGKLRQVLINLLSNAVKFTDQG-TVTLEAAYQHHTGANYLTFAVADTG 511

Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             I  +  + +F  F  S A      G GLGLSI   F++L GG +S +S
Sbjct: 512 RGIAPEEQEHLFQPFFQSAAGLKTEEGTGLGLSISRQFVDLMGGQISANS 561


>gi|254411490|ref|ZP_05025267.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181991|gb|EDX76978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1342

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  EA  +A   K+ F+ ++S+E+R+P+  ++G   LL  ++L    S+Q  Y + I 
Sbjct: 652 LVEAREAALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQTQL---TSRQRDYAQTIR 708

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++NDILD + ++AG M+L      L+  +  V   +AT+    N+ +  + D
Sbjct: 709 RSADHLLTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAEAKNLELATLVD 768

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729
            K+      D  RL Q+   + +NA+ F+ +G  VI      A   N    F+V + G  
Sbjct: 769 RKVPRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETATSKNATLHFAVSDTGVG 828

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I  +  + +F  F  V N+   Q  G GLGL+I +  ++L GG + + S
Sbjct: 829 ISPEGQEKLFQSFSQVDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVES 877


>gi|163797319|ref|ZP_02191272.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159177410|gb|EDP61966.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 537

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 7/220 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+  VS+ELR+PL +I+GF++L++   + G+   + S+Y   I AS + LL L+NDI
Sbjct: 301 KSEFLALVSHELRTPLNSILGFSELVRDQAVRGADPERMSEYAADIHASGSHLLTLINDI 360

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ ++AG M+++   +    +   V + +  +    N+ I+   D  +G   AD +R 
Sbjct: 361 LDLSKIEAGQMEIHSEWVDPAAITRAVVELMREQATRKNLTIECRLDPSIGPLRADPRRF 420

Query: 688 LQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSI-PEDMCKSV--FNRFV 743
            Q+   +LSNA+ F+    TV ++      G    +V + G  +  +D+ +++  F +  
Sbjct: 421 RQMLMNLLSNAVKFTDPPGTVTIEGRVTPEGGLTIAVVDTGIGMRSQDVARALEPFGQID 480

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           S   R Q +G GLGL +V     LHGG +S+ SS  GV T
Sbjct: 481 SPITRSQ-QGTGLGLPLVSQMARLHGGRLSMDSS-PGVGT 518


>gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
          Length = 927

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 14/223 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG + L        ++L EV    AT  HE  + I +  D K+    
Sbjct: 341 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A RD+  D  F V++ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            +F  F S A     R   G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAF-SQADASISRCYGGTGLGLVITQKLVSHMGGEISLTS 502


>gi|209525666|ref|ZP_03274203.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493835|gb|EDZ94153.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 522

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 9/243 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +  E    A+  K+ F+ ++S+ELR+PL  I+GF  L+ T++  +L  ++ Q++E 
Sbjct: 112 RQLQQAKEIADAANRAKSEFLANMSHELRTPLNAILGFAQLMSTNQ--NLAPEKRQHIEI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LL L+NDIL+++ ++AG   L  +   L D L  ++     +    N+ +   
Sbjct: 170 INRSGEHLLGLINDILEMSRIEAGGATLQVNAFDLYDFLKSLEDFFKLRATSKNLHLIFE 229

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727
               L  ++ AD ++L Q+   +L NA+ F+ +GS V ++ +  N D      F V++ G
Sbjct: 230 RPQGLIRYIKADDKKLRQVLINLLVNAIKFTDEGS-VTVRVSHQNQDTSDILKFEVEDTG 288

Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  + C+ +F  F  +        G GLGL+I + F+ L GG +++ S     +T + 
Sbjct: 289 LGIAPEDCEGLFEAFAQTETGLNASEGSGLGLAIAQQFVTLMGGEITVRSCLNQGSTFSF 348

Query: 787 RIP 789
            IP
Sbjct: 349 TIP 351


>gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 1778

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   ++ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1269 ARQVLEERAEQLAVSMRYRSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1328

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  + + 
Sbjct: 1329 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLIDYVEATFRPLTAEKGLDLS 1388

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN------------ 716
            V +S     +   D QRLLQ+   +LSNA+ F+  GS  ++++ ARD+            
Sbjct: 1389 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLEA 1448

Query: 717  -------GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                    D I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1449 GSLTDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1508

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1509 LLGGEIHAQSEPGRGSTFTLYLP 1531


>gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1792

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ 
Sbjct: 1311 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFA 1370

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ VDAG M ++ + I L  L++ V+ +      E  + + 
Sbjct: 1371 ETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKGLDLS 1430

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715
            V +S G   +   D QRLLQ+   +LSNA+ F+  GS  ++++ ARD             
Sbjct: 1431 VRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQLLEA 1490

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + + I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1491 GSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1550

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1551 LLGGEIHAQSEPGRGSTFTLYLP 1573


>gi|291565788|dbj|BAI88060.1| cyanobacterial phytochrome [Arthrospira platensis NIES-39]
          Length = 846

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
           AL E  +    A+  K+ F+ ++S+E+R+P+  I+GF DLLK    G + + KQ  Y++ 
Sbjct: 349 ALEEVAKRAEMANRSKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDEKQQSYLDA 404

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+A    L+ L++DILDL+ ++AG ++L Y  + L  LL E++Q          + +++ 
Sbjct: 405 IAAGGRALIGLIDDILDLSKIEAGKLQLEYQPMNLPILLQEIQQIFLPTAMAKGLSLQIN 464

Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD----FIFSVKNN 726
            +  +   +  D  RL QI   I+ NA+ F+ +GS T+ ++A   + D        + + 
Sbjct: 465 IEPNVPKIIEFDEVRLRQILFNIVGNAIKFTEEGSVTISVRAQNCDHDSRVTLEIMIADT 524

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           G  I  D  + +F  FV +  +  RR  G GLGL+I     NL GG +++ S 
Sbjct: 525 GMGISPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTNLLGGKLTLESQ 577


>gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 921

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 13/223 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  ++GFT  +LKT     LN  Q  Y+  I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVLGFTRQMLKTR----LNPSQQDYLLTIEKSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
            ++NDILD + ++AG + L        + L+EV + +A   HE  + + +  D ++  S 
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFAESLDEVMRLLAPTAHEKGLELTLKVDDRIPPSL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG--DFIFSVKNNGSSIPEDMC 735
           + D  R+ Q+ + ++ NA+ F+ +G+   TV LK+ +D+   +  F V++ G  I E   
Sbjct: 400 IGDALRIQQVLTNLIGNAVKFTERGNIDVTVELKSDKDDEGIELQFMVRDTGIGISERQQ 459

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             +F  F        RR  G GLGL I +  ++  GG VS++S
Sbjct: 460 AQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTS 502


>gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing
           [Symbiobacterium thermophilum IAM 14863]
          Length = 444

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 7/232 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           R+ ++++  FV +V++ELR+PLT+I GF + L     G+L+  ++   +VE +   S  L
Sbjct: 211 RQLEQMRTEFVANVTHELRTPLTSIQGFAETLLE---GALDEPETARHFVEIMLRESRHL 267

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L++++LDL+ V++G  ++     V  +L+       A K     +++   +   L   
Sbjct: 268 GALIDELLDLSRVESGKFRMQRRPTVPAELIAATAARFAQKAERAGVQLVTEAPDGLPLI 327

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL+Q+ S ++ NA+ ++  G  + L A RD      +V + G+ IP+     +F 
Sbjct: 328 NGDPDRLVQVLSNLVENAIKYTPAGGRITLSARRDGDGVRIAVADTGAGIPQADLGRIFE 387

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF  V  A      G GLGL+I +  +  HGG + + S     +T    +P+
Sbjct: 388 RFYRVDKARSRATGGTGLGLAIAKHIVEAHGGTIGVESEVGKGSTFTVILPA 439


>gi|330953354|gb|EGH53614.1| response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 1172

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 9/233 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q ++ 
Sbjct: 476 AQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVKFA 535

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKMHENNI 667
           E I ++   LLNL+NDILD++ V+AG +++   N S   L + L  + Q +A    E  +
Sbjct: 536 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAA---EKKL 592

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              V I  G       DRQRL QI   +LSNA+ F+  GS  ++ +        F V+++
Sbjct: 593 AFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRHPGAGIAFIVRDS 652

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           G  I E+  + +F  F        RR  G GLGLSI      L GG +S++S+
Sbjct: 653 GIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSA 705


>gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 641

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 132/260 (50%), Gaps = 20/260 (7%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+P     LTF ++T              +L+K D+IK+ FV  VS++LRSPLT I+G+ 
Sbjct: 396 PIPEVGIALTFSDIT--------------SLKKLDQIKSDFVHTVSHDLRSPLTAILGYV 441

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +L++  ++G++N  Q  ++  I  S   + +LV+D+LDL  ++AG        + L+ ++
Sbjct: 442 ELIE--RVGTVNDLQRDFIRRIQVSVHNITSLVDDLLDLGRIEAG-FDTRKEPVALDAII 498

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
               +     + E    +++    +  S +A+  ++ Q+   +L NA+ ++ +G  + + 
Sbjct: 499 RYSVEGFKKALGEKGHTLQLDLPAQAPSLLANPVQMRQMVDNLLDNAIKYTPQGGKIQVS 558

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
              +    +F V +NG  IP      VF++F   SNA      G GLGL+IV+S +  H 
Sbjct: 559 LRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFYRASNAA-PDVSGTGLGLAIVKSIVEAHE 617

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S+    +T    +P
Sbjct: 618 GRIWVDSAVGTGSTFTVVLP 637


>gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 953

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 17/249 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++++    E  L +    L +A  +K+ F+ ++S+ELR+PL  I+G ++ LK   LG+L
Sbjct: 544 VDISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGAL 603

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL----LNEVKQSI 658
           NS Q   +  I  S   LL L++DILD++ ++AG ++L  + + + +L    L  V    
Sbjct: 604 NSNQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLA 663

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------- 710
            TK  + NI I +    +      D +RL Q+   +LSNA+ F+ K   + L        
Sbjct: 664 FTK--QINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSP 721

Query: 711 -KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
             A        FSV +NG  I  D    +F  F  + ++   Q  G GLGL++V+  I L
Sbjct: 722 NAAISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIEL 781

Query: 768 HGGHVSISS 776
           HGG V +SS
Sbjct: 782 HGGCVEVSS 790


>gi|265765195|ref|ZP_06093470.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254579|gb|EEZ26013.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 411

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 134/242 (55%), Gaps = 8/242 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q +LT  ++T+    +R L  + E    A+++K++F+ ++S+E+R+PL  I+GF+ LL +
Sbjct: 160 QMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS 219

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +     ++++  Y++ ++ ++  LL +V D+LDL+ +++G +  +YS   +NDLL  +  
Sbjct: 220 A---DDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHG 276

Query: 657 SIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +  ++ ++   IK+I       ++  +++ R++QI + ++ NAM F+  G        +
Sbjct: 277 ILNIRL-KDKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQ 335

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +  F V + G  IP      +F+RF    H  +  G GLGL++ ++ +   GG + +
Sbjct: 336 GEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQNLGGEMGV 393

Query: 775 SS 776
            S
Sbjct: 394 ES 395


>gi|189467145|ref|ZP_03015930.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
 gi|189435409|gb|EDV04394.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
          Length = 979

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 126/236 (53%), Gaps = 7/236 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  R E+AL    E   +++ +K++F+ ++S+E+R+PL  I+GF+ LL  ++      
Sbjct: 594 ITERKRQEKALIAAREKALESERLKSAFLANMSHEIRTPLNAIVGFSSLLTATED---EQ 650

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +++  I  ++ +LL LV+DILDL+ ++A  ++ NY  + LN L  +V+ ++  ++ +
Sbjct: 651 EREEFISIIENNNQLLLQLVSDILDLSKIEANTLEFNYRDVDLNGLAKDVESTVRRRL-K 709

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            N+ ++ I          ++ RL Q+   +L NA  F+  GS       R   +  F VK
Sbjct: 710 PNVVLEFIPGAAQCHVQTEKNRLSQVLINLLVNATKFTQTGSITFGYEIR-GKELYFYVK 768

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I ++    +F RF       Q  G GLGLSI ++ I    G + + S  +G
Sbjct: 769 DTGMGISQEDQNKIFERFTKVDTFTQ--GTGLGLSICKNIIEKMKGRIGVESEGKG 822


>gi|83816271|ref|YP_444615.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855]
 gi|83757665|gb|ABC45778.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855]
          Length = 2002

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 145/281 (51%), Gaps = 17/281 (6%)

Query: 526  LEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            L   ++PL    NA+ ++   ++T++VR ER L    +A  +A+ +K+S + ++S+E+R+
Sbjct: 1711 LRVHVVPLQGDTNAKGLMLAQDITENVRKERELMSAKKAAEEANRMKSSLLANMSHEIRT 1770

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQ--------SQYVEYISASSTILLNLVNDILDLATVD 634
            PLT+I+GF ++++  ++GSL             ++   I  S   L++ +  +L+L+ ++
Sbjct: 1771 PLTSILGFAEMIE-EEIGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDTLTGVLNLSRLE 1829

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            AG M L    + L++   EV   +  +     +R++V + G+     AD   +  +   +
Sbjct: 1830 AGEMDLAAEPVDLSEQAREVAGELRPQAEAEGLRLQVQAGGEPIWAQADGGGVQIVLRNL 1889

Query: 695  LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
            +SNA+ ++  G  + L+  R+NG  +  V+++G  +  +  + +F  F   A  G  R  
Sbjct: 1890 VSNAIKYTDDGE-IRLRVYRENGSAMIEVEDSGIGMDPEKIEDLFKPF-RQASEGMAREY 1947

Query: 753  -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL++    +    G + + +     TTI  ++P +E
Sbjct: 1948 EGTGLGLAVTREAVEQMDGSIEVETEKGKGTTIRVQLPKEE 1988


>gi|42781128|ref|NP_978375.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42737049|gb|AAS40983.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 453

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   +  + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 221 HSLNHMSNKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 338

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK+ G  I
Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDEGIGI 395

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452


>gi|327481366|gb|AEA84676.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri DSM 4166]
          Length = 908

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 14/232 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S    L  +Q  Y+  I  S+
Sbjct: 264 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTQLLQKS---DLTPRQQDYLGTIEKSA 319

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   + +   V  D 
Sbjct: 320 DSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDT 379

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIP 731
            L S V D  RL Q+ + ++SNA+ F+++G+  +     D+         SV++ G  + 
Sbjct: 380 PL-SLVGDPLRLKQVLTNLISNAIKFTNEGTIAVRAMVEDDNAERAQLRISVQDTGIGLT 438

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780
           +   +++F  F    N+   Q  G GLGL I +  I   GG + + S  DEG
Sbjct: 439 DQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEG 490


>gi|315179123|gb|ADT86037.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
          Length = 915

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 266 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 321

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
            ++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 322 TIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGL 381

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN-GDFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V +++ RD+  +  F V++ G  I E    
Sbjct: 382 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQFMVRDTGIGISERQQA 441

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 442 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 483


>gi|160891180|ref|ZP_02072183.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|317481076|ref|ZP_07940155.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156859401|gb|EDO52832.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|316902789|gb|EFV24664.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 940

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 18/249 (7%)

Query: 535 NAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           N Q  L  VN  +T+    E  L E  E    AD +K++F+ ++S+E+R+PL  I+GF+ 
Sbjct: 688 NGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSS 747

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+   + G +  K+ QY+  I  ++ +LL L++DILDL+ ++AG        + +N L  
Sbjct: 748 LM--GETGDMEEKR-QYMAIIEENNDLLLQLISDILDLSKIEAGTFDFVEKELDVNMLCE 804

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++ + +  K       ++V+ D  L     V+DR RL Q+ +  ++NA+ F++ GS  + 
Sbjct: 805 DIVRFMKMKAKPG---VEVLFDRHLPECRIVSDRNRLNQVIANFVNNAIKFTTAGSIRVG 861

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINL 767
               D     F V + G  I  +M   +F+RF+   +  H     G GLGLSI +S I  
Sbjct: 862 YNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKLNTFVH-----GTGLGLSISKSIIEQ 916

Query: 768 HGGHVSISS 776
            GG + + S
Sbjct: 917 LGGTIGVDS 925


>gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
 gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
          Length = 1013

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 19/251 (7%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q + T  NVT   + E  L    E    A+  K+ F+ ++S+E+R+PL  ++GFTDLL  
Sbjct: 461 QFIATQTNVTHRKKHEAELRRAKETAEAANAAKSEFLANMSHEIRTPLNGLLGFTDLLLR 520

Query: 597 SKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              G+ N   K+ +Y++ I  S   LL+++ND+LDL+ ++AG ++          ++ EV
Sbjct: 521 ---GAANDPQKRDEYLQIIRTSGRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEV 577

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +  K  E  +R+     G++    V D  RL Q+ + ++ NA+ F+  GS  I    
Sbjct: 578 VSILRVKADEKALRLTCDWSGEVPPQIVTDSVRLRQLLTNLIGNAIKFTQFGSVSI---- 633

Query: 714 RDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            D G         F +++ G  IPE+    +F+ F        RR  G GLGL+I     
Sbjct: 634 -DAGWHAPLQQLTFVIRDTGIGIPEEKLDLIFDPFTQADATTTRRFGGTGLGLAICRRIA 692

Query: 766 NLHGGHVSISS 776
            L GG VS+ S
Sbjct: 693 RLLGGDVSVES 703


>gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24]
 gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1829

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ 
Sbjct: 1348 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFA 1407

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ VDAG M ++ + I L  L++ V+ +      E  + + 
Sbjct: 1408 ETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKGLDLS 1467

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715
            V +S G   +   D QRLLQ+   +LSNA+ F+  GS  ++++ ARD             
Sbjct: 1468 VRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQLLEA 1527

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + + I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1528 GSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1587

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1588 LLGGEIHAQSEPGRGSTFTLYLP 1610


>gi|260771270|ref|ZP_05880197.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
 gi|260613867|gb|EEX39059.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
          Length = 933

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQTIEKSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
            ++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+ +  
Sbjct: 340 TIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN-GDFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V +++ RD+  +  F V++ G  I E    
Sbjct: 400 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQFMVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501


>gi|146283013|ref|YP_001173166.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
 gi|145571218|gb|ABP80324.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
          Length = 906

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 14/232 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S    L  +Q  Y+  I  S+
Sbjct: 262 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTQLLQKS---DLTPRQQDYLGTIEKSA 317

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   + +   V  D 
Sbjct: 318 DSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDT 377

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIP 731
            L S V D  RL Q+ + ++SNA+ F+++G+  +     D+         SV++ G  + 
Sbjct: 378 PL-SLVGDPLRLKQVLTNLISNAIKFTNEGTIAVRAMVEDDNAERAQLRISVQDTGIGLT 436

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780
           +   +++F  F    N+   Q  G GLGL I +  I   GG + + S  DEG
Sbjct: 437 DQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEG 488


>gi|46199084|ref|YP_004751.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
 gi|46196708|gb|AAS81124.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
          Length = 963

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K  F+  VS+ELR+PL  I+G  +LL+      L  +  + VE I  S+  L N+
Sbjct: 732 EAERLKGEFLAAVSHELRTPLAAILGLAELLRQE---PLPPEAQESVELILESAFRLKNM 788

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V+++LD + ++AG  +++   + L  LL E+ +S       + +  +V  + +L     D
Sbjct: 789 VDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVE-ELPLMEVD 847

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R++Q+   +L+NA  F+  G +V L A     +    V++ G  IP++    +F R+ 
Sbjct: 848 PDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEEVWVEVQDTGPGIPKEEIPRLFQRYA 907

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
              H G R   G GLGL I +  +  HGG + + S +
Sbjct: 908 RAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEE 944


>gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)]
 gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)]
          Length = 1829

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ 
Sbjct: 1348 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFA 1407

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ VDAG M ++ + I L  L++ V+ +      E  + + 
Sbjct: 1408 ETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKGLDLS 1467

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------------- 715
            V +S G   +   D QRLLQ+   +LSNA+ F+  GS  ++++ ARD             
Sbjct: 1468 VRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQLLEA 1527

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + + I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1528 GSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1587

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1588 LLGGEIHAQSEPGRGSTFTLYLP 1610


>gi|284041098|ref|YP_003391028.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820391|gb|ADB42229.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 952

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 131/250 (52%), Gaps = 10/250 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +M    ++ +  + E  L    +   +A + +  F  ++S+E+R+PL  IIG + LL  +
Sbjct: 423 SMSIHYDMNERKQLEHELARAKQYAEEAQQAEKQFFANMSHEIRTPLNAIIGMSHLLYDT 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +    +++Q +Y+  +  S+  L +L++D+LD+  ++AG ++++     L  LL   ++ 
Sbjct: 483 QP---SAQQREYINILKTSADFLHSLISDLLDMTKIEAGHIEVHARPFDLAGLLRSTQKV 539

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARD 715
              K+    I I V+ D ++  +FV D   L QI   ++ NA  F+ +G   I+ K  ++
Sbjct: 540 FEMKLQGRPISIDVLLDTRITNAFVGDDVMLNQIMMNLVGNAEKFTEEGQIQIIGKVKKE 599

Query: 716 NGD---FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGH 771
            GD     F+V + G  IP D    VF +F   N+   + +G GLGL+I +  + L GG 
Sbjct: 600 EGDKTWIEFTVSDTGVGIPADKIGLVFKKFKQVNSQGYKHKGTGLGLAITKELVELQGGT 659

Query: 772 VSISSSDEGV 781
           +S+ S  EGV
Sbjct: 660 ISVKSQ-EGV 668


>gi|227823950|ref|YP_002827923.1| sensor protein [Sinorhizobium fredii NGR234]
 gi|227342952|gb|ACP27170.1| sensor protein [Sinorhizobium fredii NGR234]
          Length = 917

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 7/264 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +P+  T+  + ++T+  + +  L         A E K+ F+  +S+ELR+PL  IIG+++
Sbjct: 386 IPDGGTVAVYTDITELKQRQAELERAKSNAEAASEAKSRFLASMSHELRTPLNAIIGYSE 445

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L         ++    +E I+++   LL L+NDILDL+ ++A  M++   +  +  LL 
Sbjct: 446 MLIEEAHDHGENELVPDLEKIASAGRHLLALINDILDLSKIEANKMEVFLESFGVAQLLG 505

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +V  ++A  M +N        DG LG   +D+ +L Q    +LSNA  F++ G  V L A
Sbjct: 506 DVSATVAPLMAKNRNAFVQEFDGDLGEMHSDQTKLRQNLFNLLSNAAKFTT-GGRVTLSA 564

Query: 713 ARD---NGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            R+   +GD  +F V + G  +  +    +FN F        R   G GLGLSI  SF  
Sbjct: 565 RREGRADGDWLVFKVSDTGIGMTPEQLDRLFNAFTQADASTTRNYGGTGLGLSITRSFSR 624

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           + GG V++ S     +     +P+
Sbjct: 625 MIGGIVNVESEAGKGSVFTMEVPA 648


>gi|189468425|ref|ZP_03017210.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
 gi|189436689|gb|EDV05674.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
          Length = 497

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 134/238 (56%), Gaps = 10/238 (4%)

Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           NEALRKA   DE+K+ F+ ++S+E+R+PL  I+GF+ LL   +         ++   I  
Sbjct: 262 NEALRKARRSDELKSIFLANMSHEIRTPLNAIVGFSSLLAYGESDLTKEDIIEFTSLIEK 321

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S +L+ L++DILDL+ +++  M+ ++ ++ L+ +LNE+  +    M E  + + +   G
Sbjct: 322 NSRLLMVLISDILDLSKIESNTMEFSFCSVSLHRVLNEIGSAQRINMRE-GVELLLDLPG 380

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +  +   D  RL Q+ + +++NA+ F+S+G+  I      +G     V++ G+ +  ++ 
Sbjct: 381 QEVTVYTDPARLSQVINNLVNNAIKFTSEGNIRIGYRPAASGYVNIFVEDTGTGMSREVL 440

Query: 736 KSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + +F+RF    ++G   ++G GLGLSI ++ +    G + ++S+    T     +P K
Sbjct: 441 EHIFDRF----YKGDSFKQGTGLGLSICKTIVKRFEGKIEVTSTPGKGTCFTITLPLK 494


>gi|116623382|ref|YP_825538.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226544|gb|ABJ85253.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 796

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 13/243 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--------KTSKLGSLNSKQSQYVE 611
           EA   A++ K+ F+ ++S+ELR+P+  IIG++++L          S L  + +     ++
Sbjct: 283 EAAESANQAKSQFLANMSHELRTPMNAIIGYSEMLMDEAQDMASASALPEVEAVFVPELK 342

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+A+   LL L+NDILDL+ ++AG M L   T  + +++N+V  +I   + +N  R+++
Sbjct: 343 KITAAGRHLLALINDILDLSKIEAGKMDLYLETFQIPEMVNDVACTIQPLVDKNANRLQI 402

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI-FSVKNNGS 728
                +G   AD  ++ Q+   +LSNA  F+ KG     +     +  D+I F VK++G 
Sbjct: 403 DISPGIGPMRADLTKVRQVLFNLLSNASKFTDKGVIELRVFNHHDEARDWIAFQVKDSGI 462

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  +    +F  F        R+  G GLGL+I   F  L GG +++ S     T    
Sbjct: 463 GMTREQAARIFEAFTQADASTTRKYGGTGLGLTITRKFCELMGGRITVDSEPGQGTVFTV 522

Query: 787 RIP 789
           R+P
Sbjct: 523 RLP 525


>gi|23016597|ref|ZP_00056351.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 734

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 7/255 (2%)

Query: 542 FVNVTDSV----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + VT+ +    +AE  L    E    A   K+ F+  +S+ELR+PL  IIGF + + + 
Sbjct: 469 LIGVTEDIERRKQAEVQLLAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQ 528

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            LG +  +  +Y   I+AS   LL ++ DILDLA ++AG M+L+ + + +  ++    + 
Sbjct: 529 VLGPIPERYREYAGDIAASGRHLLGIITDILDLAKIEAGRMELDENPVEIAPVVEAAIRL 588

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDN 716
           +  +     + +       L   +AD +R+ Q+   +L+NA+ F+  G +V + A    +
Sbjct: 589 LRDRGTAARLDLHSDIPASLPRILADERRIRQVVINLLANAVKFTPHGGSVSVSANLTTD 648

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           G     V + G  + ++        FV    R  RR  G GLGL +V + + +H G ++I
Sbjct: 649 GGLALHVSDTGIGMTDEEMSQAVEPFVQVDARIARRHEGTGLGLPMVAAIMEMHRGTIAI 708

Query: 775 SSSDEGVTTINCRIP 789
           +S     TT+    P
Sbjct: 709 ASRPNQGTTVTVTFP 723


>gi|119900236|ref|YP_935449.1| putative two component sensor protein [Azoarcus sp. BH72]
 gi|119672649|emb|CAL96563.1| putative two component sensor protein [Azoarcus sp. BH72]
          Length = 852

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 122/241 (50%), Gaps = 14/241 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           N+ DSV    +     +A R+A++   +K+ FV  +S+ELR+PL  I+GF +L++     
Sbjct: 594 NMADSV--SESFQRLEDARRQAEDNSRMKSDFVASMSHELRTPLNGILGFAELIRDD--- 648

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + N +   + + I  S   LL+LVND+LD+A ++AG M L      L  LL +V     T
Sbjct: 649 APNDEVRDHADTIYQSGEHLLSLVNDVLDIAKIEAGHMSLESVAFDLPALLQQVANLHGT 708

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
              +  +      + G   +   D  RL Q+ + +L+NA+ F+  G   +L  AR   D 
Sbjct: 709 MAQQKGLAFATEFAPGLPATLAGDPTRLRQVINNLLNNAIKFTPAGEVKLL--ARTEADR 766

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I  V++ G  I  +M   +F+RF   S     +  G GLGL++V   + L GG V + S
Sbjct: 767 LIVGVRDTGPGIAAEMQPVIFDRFRQASTFITREHGGTGLGLALVREVVALMGGAVRLES 826

Query: 777 S 777
           +
Sbjct: 827 A 827


>gi|146340880|ref|YP_001205928.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146193686|emb|CAL77703.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Bradyrhizobium sp. ORS278]
          Length = 2117

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 20/260 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L  KQ ++
Sbjct: 1423 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPDGNLTVKQVEF 1482

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  + T LLNL++DILDL+ +++G + ++   I+  +LL  V +    +     +  
Sbjct: 1483 ARTIHGAGTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRLLSF 1542

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------- 719
             +  D  L  S V D +RL Q+   +LSNA  F++ G  V LK +   G +         
Sbjct: 1543 NIDVDPNLARSIVTDSKRLQQVLKNLLSNAFKFTADGG-VRLKVSAALGGWSADHPVLNS 1601

Query: 720  -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
                  F V + G  IP+D  K +F  F   A  G  R   G GLGL+I     NL GG 
Sbjct: 1602 TPAVIAFEVTDTGIGIPQDKQKLIFEAF-QQADAGTSRKYGGTGLGLAISRELANLLGGE 1660

Query: 772  VSISSSDEGVTTINCRIPSK 791
            + + S+    +T    +P K
Sbjct: 1661 IHLRSAPGKGSTFTLYLPLK 1680


>gi|320161337|ref|YP_004174561.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995190|dbj|BAJ63961.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 727

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 175/385 (45%), Gaps = 39/385 (10%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI---AATCSRYYNE--S 494
           ++H++E   +    G ++L+NPAF  L   +      G  ++ I   +A  + +  E  S
Sbjct: 329 VNHIAEPTFICNATGHLRLANPAFLELIGVDSPEKITGLPLQQIFRPSAGVTLWIKEGLS 388

Query: 495 DGW-----------DLFAAIITSFDD--ERKSLQGTLELLSDS-----VLEYSIIPLPNA 536
            GW            L   ++ +       K++ GT   LS        L+ +   + +A
Sbjct: 389 SGWTGEVEVQRLSNGLSLPVMLALRPLVPGKTIAGTAHDLSQIKQQQIALQKAYEEIAHA 448

Query: 537 QTMLTFVNVTDSVR----------AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              L+ +N     R          A + L  +N AL+  D +K+ FV  VS+ELR+PLTN
Sbjct: 449 HAELSRMNAELEQRVAEKTASLSEAYQQLERQNIALKNLDRLKSDFVSLVSHELRAPLTN 508

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G  +LL   +   L    +Q ++ + +    L   V  ILDL+ +DAG M L  + I 
Sbjct: 509 ISGGIELLLL-RSKRLPRDATQTLQLVQSEILRLTRFVESILDLSALDAGKMPLFLAPIS 567

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++ ++  VK+  +   +   IR ++    K    +AD Q L  +   +L NAM ++ +G 
Sbjct: 568 VHSVIEVVKRQFSHTPNAGRIRWEI--PDKFPDLLADEQALTSVLFHLLDNAMKYAPEGE 625

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            V+   ++++  F+  ++++G  IPE+    +F +F  +     +   G GLGL +V+  
Sbjct: 626 IVVKAWSKEDKGFL-EIRDHGQGIPEEDLPLLFTQFFRSRMSDSQTIYGHGLGLYMVQRL 684

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +    G + + +  EG     C +P
Sbjct: 685 LEAMNGTIMVRNLPEGGACFTCSLP 709


>gi|55981112|ref|YP_144409.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55772525|dbj|BAD70966.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 963

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K  F+  VS+ELR+PL  I+G  +LL+      L  +  + VE I  S+  L N+
Sbjct: 732 EAERLKGEFLAAVSHELRTPLAAILGLAELLRQE---PLPPEAQESVELILESAFRLKNM 788

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V+++LD + ++AG  +++   + L  LL E+ +S       + +  +V  + +L     D
Sbjct: 789 VDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVE-ELPLMEVD 847

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R++Q+   +L+NA  F+  G +V L A     +    V++ G  IP++    +F R+ 
Sbjct: 848 PDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEEVWVEVQDTGPGIPKEEIPRLFQRYA 907

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
              H G R   G GLGL I +  +  HGG + + S +
Sbjct: 908 RAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEE 944


>gi|269965226|ref|ZP_06179360.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
 gi|269830212|gb|EEZ84439.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
          Length = 932

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G+  V ++    +GD +   F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|217978045|ref|YP_002362192.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503421|gb|ACK50830.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 792

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 7/242 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q++L   N     R  R   E    L  A E K+ F  ++S+ELR+PL  I+G+ +LL+ 
Sbjct: 533 QSVLAMRNA----RLFRKAEENGRQLAVASEHKSRFFANMSHELRTPLNAILGYAELLRD 588

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L  +    +E + ++   LL L+ND+LDL+ ++AG + L      + +++ +   
Sbjct: 589 GLYGELPDRAKSVLERVESNGAHLLGLINDVLDLSKLEAGELSLVLDEYSMRNIVEQAIG 648

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +  +      +RI    +  +     D +RL Q+   ILSNA+ F+ +G  V +KA    
Sbjct: 649 ATYSLAQAKGLRIDQTIEEPMPLGRGDERRLTQVLINILSNAIKFTDEG-YVAIKAQTLA 707

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
             F   V + G  IP +    +F  F    +   R   G GLGLSI   F+ +HGG +S+
Sbjct: 708 DMFEIVVTDTGPGIPPEDQARIFEAFQQGDNTSTRLKGGTGLGLSISRRFVEMHGGAISV 767

Query: 775 SS 776
           +S
Sbjct: 768 AS 769


>gi|220925051|ref|YP_002500353.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219949658|gb|ACL60050.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 969

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 174/378 (46%), Gaps = 17/378 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             ++DL  +   L +++   +D +++GV      GRI   N   ++L+  E   ++ G  
Sbjct: 596 AAELDLARQQANLREIEA-VLDSMTDGVVTLDGSGRILDFNKGAKALFGHEPREVT-GED 653

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +    SR   +       AA+  +   E  S++   E   + +L  ++ P+    T 
Sbjct: 654 FSLLFTPDSRPAVQ-------AALQRARSGEPASIEAIGER-REGILALTVAPIAGEGTR 705

Query: 540 ---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  +VT + R E  L     A   A+  K+ F+  +S+E+R+PL  I+GFT+++  
Sbjct: 706 RFSALLRDVTAARRTEAELLRAKRAAEAANSQKSDFLATISHEIRTPLNAILGFTEVMME 765

Query: 597 SKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            + G + N +   Y+  I  S   +++LV D+LDLA ++AG + L+++ + LNDL+    
Sbjct: 766 EQFGPIGNERYRDYLRDIRTSGEHVVSLVTDLLDLAKIEAGHLDLSFTGVALNDLVGASV 825

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-R 714
             +  +     + ++      L   +AD + + Q    +++NA+ F+  G  VI+  A  
Sbjct: 826 SLMQPQAARQRVVVRTSFASGLKPVLADMRSMRQAALNLIANAIKFTDAGGQVIVSTAMT 885

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           D G     V++ G  +  D  ++    F  V+ A   + RG GLGL + ++ +  + G +
Sbjct: 886 DRGGVALRVRDTGIGMTPDEIETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGTL 945

Query: 773 SISSSDEGVTTINCRIPS 790
            ++S     T +    P 
Sbjct: 946 RVTSRKHEGTLVEVLFPP 963


>gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 883

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 132/253 (52%), Gaps = 21/253 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   +K EA  KA   K++F+ ++S+ELR+PL  I+GF+ LL   +  +L  +Q Q +  
Sbjct: 372 RESRDKAEAANKA---KSAFLANMSHELRTPLNAILGFSQLLARDE--NLTLEQKQTLNT 426

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S + LL+L+ND+LD++ ++AG + LN     L  LL+ +++  A K     + + + 
Sbjct: 427 INRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSKGLVLNIQ 486

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAA--------RDNG 717
              +L S +  D  RL Q+   +L+NA+ F+  GS  +      L A         + + 
Sbjct: 487 KSSQLPSHIRVDESRLRQVLINLLTNALKFTDVGSVTLRVFTQPLPAPFSLNQETLQPSL 546

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              F V++ G  I  +    +F  F+ +++ R    G GLGL+I   FI+L  G + I S
Sbjct: 547 SLCFDVEDTGIGIANNELDHIFEAFIQTSSGRRSHEGTGLGLAICHHFIHLMEGDIQIQS 606

Query: 777 SDEGVTTINCRIP 789
                TT++ +IP
Sbjct: 607 QLGQGTTVSVQIP 619


>gi|301309818|ref|ZP_07215757.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300831392|gb|EFK62023.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 761

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ +    E  L    E   ++D +K++F+ ++S+E+R+PL  I+GF++L+  S+    
Sbjct: 513 LNIQNIKDTEGVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLM-NSEEVLE 571

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M   +    LN L+NE+  +    M
Sbjct: 572 PEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMM 631

Query: 663 HEN-NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E   +R++V    ++   VA D  RL Q+ S  ++NA+ F++ G   +       GD +
Sbjct: 632 PEGVELRMRV---PEIPVIVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCL 688

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              V++ G  IPE+  K VF+RF       Q  G GLGL+I +      GG + + S
Sbjct: 689 HIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGLAICQVIAQRFGGEIQLKS 743


>gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
 gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
          Length = 1567

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            + T  ++T     E +L E       A + K+ F+ ++S+E+R+PL  +IGFTDLL  ++
Sbjct: 910  LATIQDITRRKEMENSLVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMKTE 969

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            L   N+ Q QY+E +  S+  LL+L+NDILD + ++AG ++L+   I + +L  +    +
Sbjct: 970  L---NTSQKQYMETVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVV 1026

Query: 659  ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
              K HE  + + +    K+  ++  D  R+ QI + +L NA+ F++KG   + ++A   N
Sbjct: 1027 KHKAHEKGLEVLLNISQKVDRYIYGDSVRIRQILTNLLGNAVKFTNKGEIELRIEAGNKN 1086

Query: 717  G----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                 ++ F V++ G  I     + +F  F        R+  G GLGL+I    + L   
Sbjct: 1087 TEHQREYTFIVRDTGIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNS 1146

Query: 771  HVSISS 776
             + + S
Sbjct: 1147 KLDVQS 1152


>gi|67921588|ref|ZP_00515106.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67856700|gb|EAM51941.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1249

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 129/243 (53%), Gaps = 17/243 (6%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEYISA 615
            R  D++K +F+  VS+ELR+PLT+I+GF+ L++         ++ + +SK S  +E I  
Sbjct: 1003 RAVDQMKKNFLSMVSHELRTPLTSIVGFSSLIRDKLNETIFPEIQNPDSKTSNAIERIQQ 1062

Query: 616  SSTILL-------NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I++        LV+D LD+  +++G + LN   I  + +L+    S++     +++ 
Sbjct: 1063 NLDIVVCEGERLSKLVHDFLDMTKIESGKITLNLFPIQPSTVLDWAIGSVSPLFSNSSVE 1122

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +       L + + D  RL+Q+F  ++SNA+ F+ KGS V  +A  D+ + + S+ + G 
Sbjct: 1123 LVEDFSRDLPTILGDEDRLIQVFVNVISNALKFTEKGS-VTCRAEVDHENLLISITDTGI 1181

Query: 729  SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I E+    VF+ F  V N    +  G GLGLSI +  +  HGG++ ++S     TT   
Sbjct: 1182 GIAENDYSKVFDPFQQVGNVLTNKPPGTGLGLSISKQIVEQHGGNIWLTSKLGQGTTFFI 1241

Query: 787  RIP 789
              P
Sbjct: 1242 SFP 1244


>gi|197106945|ref|YP_002132322.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480365|gb|ACG79893.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 514

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L+E+  A     +I    +  +S+E R+PL  ++G   LL+ ++L    ++Q  YV  
Sbjct: 6   RPLSERRPAR---AQISAEQLASLSHEFRTPLNGVLGMARLLEGTRL---TAEQRSYVAA 59

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL LVND+LD A + AG ++L+  T+ +  LL  V + ++ +  E  + I   
Sbjct: 60  LRESGQHLLTLVNDVLDFAKLGAGRVELHPETMEVESLLRGVAELLSPRAREKGLEIAWA 119

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   +GS  AD  RL QI      NA+ F+  G  ++  +  + G   F+V++ G  + E
Sbjct: 120 APAGVGSVRADEGRLRQILLNFAGNAVKFTEAGGVLLAVSTPEPGRLRFTVEDTGPGVSE 179

Query: 733 DMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
                +F  F  + A      G GLGL+I        GG V + ++  G
Sbjct: 180 AARDRIFEAFAQAEASHADLGGAGLGLAIARRLARAMGGEVGVETARMG 228


>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 816

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 18/244 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D  RAE ALT       +A+  K  F+ ++S+E+R+P+  +IG   LL  ++L   +
Sbjct: 120 DISDLKRAEVALTRAKAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTEL---S 176

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV  I  S+  L+ L+ND+LD + ++AG ++L      L D L +   S+A +  
Sbjct: 177 VQQREYVSIILHSADTLMRLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAA 236

Query: 664 ENNIRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
              + +       I D    + V D  RL QI + ++ NA+ F+ KG  V+   LK   D
Sbjct: 237 HKGLELAYHVPVEIPD----ALVGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETTD 292

Query: 716 NG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 F V++ G  I ++  + VF  F        RR  G GLGL+I        GG +
Sbjct: 293 TDVQLEFEVRDTGIGISKNQQEKVFTAFGQADASTTRRYGGTGLGLTIAAQLAEKMGGKI 352

Query: 773 SISS 776
            + S
Sbjct: 353 KLES 356


>gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
 gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
          Length = 1107

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 132/253 (52%), Gaps = 6/253 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           FV++T+    E  L +      +A + K SF+ ++S+E+R+P+ +IIGF+DLL  +    
Sbjct: 512 FVDITERKEYEEKLEKAKLIAEEAAQAKQSFMANMSHEIRTPMNSIIGFSDLLMDT---P 568

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN++Q +++  ++ ++  LL L+N++LD A ++ G + +      L  +++ +  +   +
Sbjct: 569 LNNEQQKHLVTVNNAARSLLRLLNEVLDSAKLERGKLTIEAVHFSLKPVIDSIISTFWLE 628

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + ++ + + I +    ++  D  RL QI + ++ NA+ F+  GS  I  +   NG   
Sbjct: 629 AKKKDLILHLTIKESVQNTYYGDPDRLRQILTNLIGNAIKFTEHGSVTITVSTTQNGHLF 688

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I +D   ++F  FV       RR  G GLG +I +  + L GG +++ S  
Sbjct: 689 FEVQDTGIGIEKDRVSAIFQPFVQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSEV 748

Query: 779 EGVTTINCRIPSK 791
              T     +P K
Sbjct: 749 NKGTCFYFSLPLK 761


>gi|29654391|ref|NP_820083.1| hypothetical protein CBU_1084 [Coxiella burnetii RSA 493]
 gi|29541658|gb|AAO90597.1| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 683

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+ L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+
Sbjct: 281 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 337

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   ++ IS +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H
Sbjct: 338 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 397

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           +  I++K      + S V  D +R+ Q+   +LSNA+ F+ KG   +    LK       
Sbjct: 398 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 457

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+VK+ G  + +    S+FNRF  +++ ++ +  GVGLGLSIV+  +   GG +S++S
Sbjct: 458 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 517

Query: 777 SDEGVTTINCRIP 789
                +   C IP
Sbjct: 518 EPGVGSEFTCIIP 530


>gi|148262093|ref|YP_001228799.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146395593|gb|ABQ24226.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 758

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 166/357 (46%), Gaps = 35/357 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT--------CSRYYNES 494
           ++EGV V   D R+ L NPA ++++     R+  G  I  +           C R   ES
Sbjct: 418 MAEGVVVTDKDNRVILFNPAAQNIFDLVPFRVV-GQPIEQVCRVGEFTLLLDCIREIRES 476

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            G    A+     + + K L+  L  ++D   ++       A  +++  ++T        
Sbjct: 477 GGP--VASRQEEMEVKGKKLKINLSPMADDAGQF-------AGVVMSIRDIT-------- 519

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                 A  + D +K  F+  VS+EL++PLT++ G   LL  ++   L   + Q +    
Sbjct: 520 ------AEEEVDRMKTDFISTVSHELKTPLTSMKGSLQLL-LNRGKWLTDTERQLLSVCL 572

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  L+ L+N+ILD++ +++G MK +Y  + + +L+    + I       NI I     
Sbjct: 573 RNTQRLIRLINEILDISKIESGGMKFDYKPLSMGELVVYAAEEIKGFALSRNISIVNSVG 632

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D  RL+Q+ + +LSNA+ FS +G  V++ A R+    + SV + G  I    
Sbjct: 633 DHLPLIFGDHDRLIQVLTNLLSNAVKFSPEGKVVMVLAEREGNYLLVSVADRGKVIQWAD 692

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F +F  ++NA + Q+ G GLGL+I +  I  H G +  ++  EG       +P
Sbjct: 693 REKLFKKFQQLNNADQLQQGGTGLGLAICKEIIEKHHGRIYYNAGKEGGNVFTFTVP 749


>gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891]
 gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891]
          Length = 886

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 17/241 (7%)

Query: 550 RAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +A+  LT+  E   KA +        K+SF+ ++S+E+R+PL  +IG T++L  +    L
Sbjct: 365 QAQERLTQAKEDAEKAKDAAVMACKAKSSFLANMSHEIRTPLNGVIGITEVLSDT---DL 421

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N  Q  YVE I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   +A + 
Sbjct: 422 NPSQKDYVETIETSSQLLLSLINDVLDFSKIESGMLLVSPHSTCVRESIYDIASIVAPQA 481

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
            E  I + V IS       + D  RL Q+    +SNA+ F++ G   +  +++  G+ I 
Sbjct: 482 KEKGIDLHVSISSETPYRVIVDDHRLRQVLMNFMSNAVKFTNSGVVSLQLSSKHVGENII 541

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F+V++ G  I E   K +F  F        R+  G GLGL+I    + L G  + ++
Sbjct: 542 EMTFAVQDTGVGIDEQQQKKIFEPFSQEDDSTTRKFGGTGLGLAISTQLVELMGSQIELT 601

Query: 776 S 776
           S
Sbjct: 602 S 602


>gi|160888884|ref|ZP_02069887.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492]
 gi|317479383|ref|ZP_07938517.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156861783|gb|EDO55214.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492]
 gi|316904457|gb|EFV26277.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 446

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 9/240 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++    + E  L    +     D +K++F+ ++S+E+R+PL +I+GF  ++  ++
Sbjct: 198 VITSVDIDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASII--AE 255

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L     +Q +Y+  +  ++ +LL L++DILDLA ++AG +  N   + ++D   +V ++ 
Sbjct: 256 LDDREERQ-EYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDVMRNY 314

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
             K  +  + + +  D        D++RL+Q+ +  ++NA+ F+S+G  ++        G
Sbjct: 315 DIK-EDKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSEGQILLEYHPVEGTG 373

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              FSV + G  I  D   +VF+RFV  N      +G GLGLSI +S I   GG +   S
Sbjct: 374 QIEFSVTDTGMGIAPDAVATVFDRFVKLNTF---AKGTGLGLSICKSIIEHLGGTIGTES 430


>gi|119486747|ref|ZP_01620722.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Lyngbya sp. PCC 8106]
 gi|119456040|gb|EAW37173.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Lyngbya sp. PCC 8106]
          Length = 1471

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 142/279 (50%), Gaps = 33/279 (11%)

Query: 542  FVNVTDSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSP 583
             V++T   +AE AL + N++L +                  A+  K+ F+  V++ELRSP
Sbjct: 957  IVDITARKQAELALDQLNQSLEERVRHRTQELEEAKQKAETANNAKSQFLSRVTHELRSP 1016

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I+GFT LL+  +  +L+S+Q Q V  I  +   LL L+N++LDL  V+A  M+LN  
Sbjct: 1017 LNIILGFTQLLE--RCDNLDSQQQQQVNLIFNNGQQLLKLINELLDLGKVEANRMELNVE 1074

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
               L  L++E+++    ++    +  +V  D ++   +  D+ +L Q+   +++NA+ F+
Sbjct: 1075 WFDLYCLMDELQEMFKLEIQRKGLEFRVNLDSQVPQQIQTDKTKLRQVLINLITNAIKFT 1134

Query: 703  SKGSTVILKAARD------NGD----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR 751
              G  + L+   D      N D      F V++ G  IP +    +F  FV   + R  +
Sbjct: 1135 DVGQ-ICLRVNVDSTLSNQNEDQSLKLRFEVEDTGRGIPPEELDRLFEPFVQGKSGRNSQ 1193

Query: 752  RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +G GLGL+I   F+ + GG + ++S+    T I+  I S
Sbjct: 1194 QGTGLGLAICRYFVEMMGGEIGVNSTLGAGTRIHFSIVS 1232


>gi|296532186|ref|ZP_06894941.1| possible PAS/PAC sensor hybrid histidine kinase [Roseomonas
           cervicalis ATCC 49957]
 gi|296267488|gb|EFH13358.1| possible PAS/PAC sensor hybrid histidine kinase [Roseomonas
           cervicalis ATCC 49957]
          Length = 835

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K+ FV  VS+ELR+PLT+I     L+     G+L     + +   + ++  L+ L
Sbjct: 334 RLDALKSEFVSTVSHELRTPLTSIRASLGLVMGGVAGALPEPVRELLGIAAKNAERLVLL 393

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           VNDILD+  +++G +      +    LL +   + A    +  +R   + +G   + V A
Sbjct: 394 VNDILDIEKIESGRLDFQRERVSARALLQQAVAANAAYGAQFEVRF-ALDEGPEDALVYA 452

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QR+ Q+ + +LSNA  FS +G  V +    D G+  F V+++G  IP +    +F RF
Sbjct: 453 DVQRIQQVLANLLSNAAKFSPRGGVVEVSLGVDAGNAFFRVRDHGRGIPPEFRSRIFQRF 512

Query: 743 ----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                S+A   Q+ G GLGLSI ++ +  H G +    + EG  T+ C
Sbjct: 513 AQADASDAR--QKGGTGLGLSISKAIVEHHAGSIGFEEA-EGGGTVFC 557


>gi|256423016|ref|YP_003123669.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256037924|gb|ACU61468.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 736

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 140/264 (53%), Gaps = 16/264 (6%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDL 593
           ++L+F+ +T  +  +  L E  +  R+ ++    +K+ F+ ++S+E+R+P+  ++GFT L
Sbjct: 197 SLLSFLYITSRIYKQEQLIEALDHSRQQEKKLTVVKDQFLANMSHEIRTPMNAVLGFTHL 256

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+      LN K  +YV  I  +   LL+++NDILD++ +++G+M+L   +  L  +++ 
Sbjct: 257 LQQQ---PLNEKSREYVASIQHAGENLLDIINDILDISKIESGMMRLEPVSFSLRGMMHS 313

Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++     K  E  + + V I  G       D  RL Q+   +++NA+ F+ +G  V ++ 
Sbjct: 314 LQLMFQPKAQEKLLDLSVHIDAGVPDILYGDVMRLTQVLVNLVNNAIKFTPQGQ-VTVRV 372

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           +   G+      +F++ + G  I  +   ++F+RF        R+  G GLGL+IV+  +
Sbjct: 373 SPVGGNESGIRLLFTIADTGIGISPNKLSTIFDRFNQAEADITRKYGGTGLGLTIVKQLV 432

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            L  G +S+ S     +T   ++P
Sbjct: 433 ELQHGTISVESELGKGSTFLVQLP 456


>gi|163847332|ref|YP_001635376.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525178|ref|YP_002569649.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668621|gb|ABY34987.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449057|gb|ACM53323.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 917

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 7/246 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E+ L +  +A   A   K++F+  +S+ELR+PLT IIG++ LL+      +    +  
Sbjct: 377 RVEQELIKARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLLEQLVSKGIYDTVAHD 436

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I A+ T LL L+NDILD++ ++AG M ++     + DL+     +I  ++ +N  R+
Sbjct: 437 VGRIRAAGTHLLALINDILDISKIEAGRMTVSVEYADVADLVRSAVNTIIPQIEKNRNRL 496

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
            V     +G   +D  ++ Q    +LSNA  F+  G  V L  +R   D    F F V +
Sbjct: 497 HVHCPPDIGILNSDATKVRQALINLLSNAAKFTEDGE-VTLTVSRYQKDHQTWFRFVVAD 555

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP D    +F  F  V ++   +  G GLGL++ +    L GG +++ S+    +T
Sbjct: 556 TGIGIPADKHDKLFKAFSQVDDSPTRKYGGTGLGLALSQRLCELIGGRITMESAVGVGST 615

Query: 784 INCRIP 789
               IP
Sbjct: 616 FTMEIP 621


>gi|238894393|ref|YP_002919127.1| hypothetical protein KP1_2376 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546709|dbj|BAH63060.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 897

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 120/218 (55%), Gaps = 7/218 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A+E K++F+ ++S+E+R+P+  I+G T L   +    L ++Q +Y+  + +S+  LL+
Sbjct: 262 REANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT---PLTAEQREYLSLVMSSAQSLLH 318

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++NDILD + +++G M+++   + +   +  + +       E  I + V IS       +
Sbjct: 319 IINDILDFSRIESGKMQVDVEPLEIRPFVQSLIRPHMPAASEKGIELLVDISPAVPEVLI 378

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D  RL QI + +L NA+ F+ +G  ++ +  A D+  + F +++ G  I  +  K++F 
Sbjct: 379 VDGPRLRQILTNLLGNALKFTHQGEVLLAIAPAEDDNRWRFRIRDTGIGIAPEKQKAIFE 438

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F        RR  G GLGL+I    ++L GG +++ S
Sbjct: 439 AFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVES 476


>gi|84687780|ref|ZP_01015651.1| sensor histidine kinase/response regulator [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664216|gb|EAQ10709.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2654]
          Length = 600

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 179/385 (46%), Gaps = 34/385 (8%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            E  TV+VD+  +          +I+ + +G AVF  + R+ ++NPA+ + +   E  + 
Sbjct: 60  LERKTVEVDIAKRR------LWSSIETVEDGFAVFDAESRLVIANPAYYAPFDGLEC-IR 112

Query: 476 PGTHIRNIAATC---------SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           PG H   I              R   E   W +     T   + R+     + L + + L
Sbjct: 113 PGAHYEEIVEAALSEGIVDIGERTVPEWRDW-MLERWATDAPEPRQ-----IRLWNGAYL 166

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                  P   T+   ++VT ++R + AL         A   K++F+ ++S+E+R+P+  
Sbjct: 167 RLVDRRAPGGDTVSMAMDVTQAIRRQDALRAARARAEAASRAKSAFLANMSHEIRTPMNG 226

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G  DL+       L+ + + YV+ I +S   LL ++ND+LD + ++A  ++L+     
Sbjct: 227 VVGMADLMAEH---DLDEEMASYVDTIRSSGRALLTIINDVLDYSKIEAAKLELHLEPFD 283

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L   + +V   +   + E  ++I +  D  L + +  D  R+ QI + ++ NA+ F++KG
Sbjct: 284 LEQTILDVIALVMPSIREKGLKIMLDVDMFLPTRYEGDPVRVRQILTNLIGNAVKFTAKG 343

Query: 706 STVI-LKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
             ++ +    D GD       +V++ G  IP DM   VF  F  V +       G GLGL
Sbjct: 344 HILVRVIGMPDGGDARQRVHVTVEDTGIGIPRDMQDHVFGEFNQVEDERNRSFEGTGLGL 403

Query: 759 SIVESFINLHGGHVSISSSDEGVTT 783
           +I    ++L  G V +  S+EG+ +
Sbjct: 404 AITRQLVSLMLGEVWV-ESEEGIGS 427


>gi|330810584|ref|YP_004355046.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378692|gb|AEA70042.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1131

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 130/253 (51%), Gaps = 4/253 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +      ++AL +  EA   A+  K+ +V  +S+ELR+PL +I+GFT +L+ 
Sbjct: 649 QTQLLMQEIEAHRLTDQALQDAKEASEAANAAKSRYVTGLSHELRTPLNSILGFTQILQR 708

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               ++  +    +  I  S + LL+L++ +LD+A ++AG ++L  + I   +L+++++ 
Sbjct: 709 D--AAMPEQHQDALATILRSGSHLLSLIDGLLDVAKIEAGKLRLEATEIPFPELIHDLEL 766

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  +  +R ++   GK+ + V  D +R+ QI   +L NA++F+  G  V L+ +  
Sbjct: 767 MFTPQARDKGLRFRLELIGKMPAVVRGDEKRVRQILINLLGNAVNFTDSGE-VCLRVSYM 825

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                F + + G  I  +  + +F  F       Q +GVGLGL+I     +L GG + + 
Sbjct: 826 RETATFDIIDTGIGIDPEHIERIFQPFERGDLMRQDKGVGLGLTITRMLTSLMGGELQVK 885

Query: 776 SSDEGVTTINCRI 788
           S  +  T    R+
Sbjct: 886 SQQDKGTCFQVRL 898


>gi|228920707|ref|ZP_04084048.1| hypothetical protein bthur0011_17190 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838925|gb|EEM84225.1| hypothetical protein bthur0011_17190 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 443

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA++IKN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 222 KAEQIKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG  S++S +   TTI  ++P
Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGAFSVTSKEGIGTTILIKLP 442


>gi|223983581|ref|ZP_03633762.1| hypothetical protein HOLDEFILI_01043 [Holdemania filiformis DSM
           12042]
 gi|223964426|gb|EEF68757.1| hypothetical protein HOLDEFILI_01043 [Holdemania filiformis DSM
           12042]
          Length = 934

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 132/233 (56%), Gaps = 8/233 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K ++++ + ++ +S++LR+PLT+I G   +L  S     +++  Q +  I+  S  L+NL
Sbjct: 691 KNEQLRANLLRSISHDLRTPLTSISGNAGILLNSPQSLDSARSRQLIADIAEDSAWLINL 750

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++L +  ++ G M LN  T ++ +++ E  Q I+    E++I  +      L     D
Sbjct: 751 VENLLSITKIENGTMSLNLQTELMEEVITEALQHISRHRREHHIVHEECPQIVLVRI--D 808

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q ++Q+   +++NA+ ++ +GS + +++  +  + +  V ++G  IP+ M + +F+ F 
Sbjct: 809 SQLMMQVIINLVNNAIQYTPEGSRITIRSFLEGQELVVEVADDGPGIPDAMKERIFDLFY 868

Query: 744 SNAHRGQ----RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           ++  RGQ    RRG+GLGL++ +S I+ HGG +++  +       + R P++E
Sbjct: 869 TS--RGQIADSRRGMGLGLALCQSIISAHGGRLAVRDNVPHGALFSFRCPAEE 919


>gi|307155071|ref|YP_003890455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985299|gb|ADN17180.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1200

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 131/246 (53%), Gaps = 14/246 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T   +AE  L    EA   A+ IK+ F+ ++S+E+R+P+  I+GF +LL    L 
Sbjct: 687 TITDITAKKQAEEELKAAKEAAEIANRIKSQFIANISHEIRTPMNAILGFCELL----LN 742

Query: 601 SLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             N  ++  Y++ IS+S   LL L+NDILDL+ ++AG ++LNY  I L +L+ +V Q  +
Sbjct: 743 IHNDPRTLSYIQSISSSGRTLLALINDILDLSKIEAGKLELNYEPINLRELIIDVCQIFS 802

Query: 660 TKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS---TVILKAARD 715
           T+     +++    +  +   +  D  RL QI   I+ NA+ F+ KG    TV  +    
Sbjct: 803 TQAQTKKLQLLTEFEPNVPHVINFDEVRLRQILFNIIGNALKFTEKGYVKVTVFSENLAT 862

Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           N ++I    SV++ G  I       +F+ F  +  +  R+  G GLGLSI +    + GG
Sbjct: 863 NNNYIQLKISVEDTGIGIATGQQDRIFDMFTQSEGQSTRKYGGTGLGLSITKRLTEMLGG 922

Query: 771 HVSISS 776
            + + S
Sbjct: 923 QIILQS 928


>gi|110632533|ref|YP_672741.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            sp. BNC1]
 gi|110283517|gb|ABG61576.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans
            sp. BNC1]
          Length = 1192

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 5/250 (2%)

Query: 533  LPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            LPN       + ++T   RAE  LT+      +A   K+ F+  VS+E+R+PL  IIGF+
Sbjct: 924  LPNGSGYCAVLRDITHWKRAEEDLTQARAQAERASSQKSEFLARVSHEIRTPLNAIIGFS 983

Query: 592  DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L+   K G + N +   Y+  I+ S   +L+LVND+LD++ ++AG  ++ +  + LND 
Sbjct: 984  ELMIDEKFGPIGNDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAHEAVPLNDT 1043

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            L +V   +  + +   + I+     +L   VAD + + QI   +LSNA+ ++  G  V++
Sbjct: 1044 LAQVIAMMQPQANRERVIIRSSLASRLPDVVADLRSVRQIAINLLSNAVRYTPAGGQVVV 1103

Query: 711  KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINL 767
                + +G  +  V++ G  +           F   NA R +R  G GLGL +  + +  
Sbjct: 1104 STVYERDGSVVLRVRDTGVGMSSAELDEALKPFRQINALRRKRGDGTGLGLPLTRAMVEA 1163

Query: 768  HGGHVSISSS 777
            +    SI+S+
Sbjct: 1164 NRAQFSIAST 1173


>gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1263

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  + + AL +      +A   K+ F+ ++S+E+R+P+  +IG + LL  ++L   N
Sbjct: 518 DVTERKQQQEALEQARREAERASRAKSEFLANMSHEIRTPMNAVIGLSQLLAQTEL---N 574

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   V  I  SS +LL ++NDILD + +++G ++L      LN+++ +V      K+H
Sbjct: 575 EEQRDQVRKIHQSSRMLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGDKVH 634

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDN 716
              + +   I      + V D  RL QI   +LSNA  F+ +G T      V+   A D 
Sbjct: 635 AGGLELLYDIPPHLPRTLVGDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVANDQ 694

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F V++ G  + ++    +F  F        RR  G GLGL I    +   GG + +
Sbjct: 695 ATLRFHVRDTGIGMSKEQLARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGELEV 754

Query: 775 SSS 777
            S+
Sbjct: 755 ESA 757


>gi|254230528|ref|ZP_04923899.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262393275|ref|YP_003285129.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
 gi|151936953|gb|EDN55840.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262336869|gb|ACY50664.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
          Length = 932

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G+  V ++    +GD +   F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|329910831|ref|ZP_08275387.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546070|gb|EGF31141.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1228

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 166/353 (47%), Gaps = 16/353 (4%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESD 495
           E ++ L  GVAV     ++ L N  F SL  +  +  + SP      +  +  + +    
Sbjct: 445 EVLESLPFGVAVLNGQQQVILRNRLFGSLQGYPPDLFQKSPLMFAEMVRFSYEQGHYPQR 504

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
            +D   A   +    R+S++    L  +  LE    P+     +LT+ ++T   RAE+AL
Sbjct: 505 SYDDVLAEYLAMIGSRQSVRIERSLPGNQYLEIRGQPISADWILLTYTDITAFRRAEQAL 564

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           ++       A+  K+ F+ ++++ELR+PL  +IG   LL  S    LN+ Q  Y + I+ 
Sbjct: 565 SQARTEAETANLAKSDFLANMTHELRTPLNAVIGLARLLTESP---LNAWQRDYADKIAL 621

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
           S+  L  L+NDILDL+ ++A  +++      LN LL      +   + +  I + + ++ 
Sbjct: 622 SAQSLQVLINDILDLSKMEANQLRIEQIPFSLNLLLRTAASVLGVGVGQKAIAVVLDLAP 681

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDFI-FSVKNN 726
               + V D  R+ QI   ++SNA+ F+ +G  V+       +  A      +  +V++ 
Sbjct: 682 DVPDALVGDPLRVQQILLNLISNALKFTERGEIVVSVRCQSMMPVAAGAPILLQIAVRDT 741

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           G  I     +++FN F+       R   G GLGL+I    + + GG +S+ S+
Sbjct: 742 GIGIAVAALETIFNAFIQADASTSRLYGGTGLGLTISNRLVTMMGGQISVDST 794


>gi|167821444|ref|ZP_02453124.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 91]
          Length = 391

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 12/226 (5%)

Query: 559 NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +A R+AD    +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  
Sbjct: 2   RDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDR 58

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  L  +V DILD +++  G ++L+   + L  ++N+V  ++      + I + V  + 
Sbjct: 59  SARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSV--EC 116

Query: 676 KLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            L + +   D +RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +
Sbjct: 117 ALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPE 176

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               VF  F     A    RRG+GLGLSIV     LHGG V  +S+
Sbjct: 177 FLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASA 222


>gi|164685702|ref|ZP_01946761.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii 'MSU Goat Q177']
 gi|164601209|gb|EAX32628.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii 'MSU Goat Q177']
          Length = 669

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+ L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+
Sbjct: 267 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 323

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   ++ IS +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H
Sbjct: 324 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 383

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           +  I++K      + S V  D +R+ Q+   +LSNA+ F+ KG   +    LK       
Sbjct: 384 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 443

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+VK+ G  + +    S+FNRF  +++ ++ +  GVGLGLSIV+  +   GG +S++S
Sbjct: 444 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 503

Query: 777 SDEGVTTINCRIP 789
                +   C IP
Sbjct: 504 EPGVGSEFTCIIP 516


>gi|186473973|ref|YP_001861315.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184196305|gb|ACC74269.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 939

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 8/216 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ H+S+ELR+PL  I+G+  +LK  K  +L+ +Q   +  I  S   LL L+
Sbjct: 475 ANQAKSDFLAHMSHELRTPLNGILGYAQILKRDK--NLDRRQVDGLMVIQRSGEHLLTLI 532

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVA 682
           +DILD+A ++AG M+LN+S + L   ++ + +++  K  E  +    ++  D   G  V 
Sbjct: 533 DDILDMAKIEAGRMELNFSDVPLARFIHFIVETMRVKATEKGLEFACEMAPDLPAGVRV- 591

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+   ++SNA+ F+ +GS  +           F V++ G  I E   +++F  F
Sbjct: 592 DEIRLRQVLLNLISNAIRFTEQGSVRLRVGFMPPTRLCFEVRDTGIGIEEARLEAIFRPF 651

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             VS+A R +  G GLGL+I    + L G  + + S
Sbjct: 652 EQVSDA-RYRSGGTGLGLAISRELVRLMGSEIHVES 686


>gi|167648426|ref|YP_001686089.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167350856|gb|ABZ73591.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 627

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 9/234 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ +K+ F+ ++S+E+R+PL  ++  T+++    +G L++ Q + +  I  S  +LL+++
Sbjct: 244 ANVLKSHFLANMSHEIRTPLNGVLAMTEVMA---MGELSAAQRERLSVIRESGDLLLSVL 300

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LDL+ ++AG + L      L  L   +++S AT+  + N+   V ++   LG +  D
Sbjct: 301 NDVLDLSKIEAGRLDLVERDFDLASLALSIRESYATQARQKNLEFGVFVAPEALGPWRGD 360

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
             RL QI   ++SNA+ F+ +GS  +  A+ D+G  +   V + G  I  +    +F++F
Sbjct: 361 ADRLRQILGNLVSNALKFTLEGSVSVRFASADDGSGLRIDVVDTGIGIAAESLPRLFDKF 420

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT-TINCRIPSKE 792
           V       RR  G GLGLSI      L GG V + S + +G T T+   +P  E
Sbjct: 421 VQADSSTTRRFGGSGLGLSICNELAALMGGGVHVQSREGQGSTFTVVVAMPRGE 474


>gi|17231988|ref|NP_488536.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
 gi|1546076|gb|AAC32398.1| HepK [Nostoc sp. PCC 7120]
 gi|17133632|dbj|BAB76195.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
          Length = 575

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 155/338 (45%), Gaps = 42/338 (12%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           W+T      P   +  +A   +R  N    +DL A + T  +DE   L  +L  L + V 
Sbjct: 266 WRTSRAIAEPVIMVTQVAEQVARKPN----FDLRAPVTT--EDEIGLLAKSLNRLIERVS 319

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E +                       + L +  E    A + K+ F+ +VS+ELR+PL  
Sbjct: 320 ERT-----------------------KELEQAKELAEAASKAKSIFLANVSHELRTPLNA 356

Query: 587 IIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +IG + LLK      +L+ + +  +E I+++   LL L+NDILDL+ ++AG M L     
Sbjct: 357 VIGLSQLLKDDAADLNLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIF 416

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+N V  ++   + +NN  +++  D  LG+  AD+ R+ Q+   +LSNA  F++ G
Sbjct: 417 DVVTLINNVVVTVKPTIEKNNNLLEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFTTNG 476

Query: 706 STVILKAARDNGDFI---------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
             + L   R+  DF+         F+V + G  +     + +F  F        ++  G 
Sbjct: 477 R-IKLTVRREKEDFLPEMPFGAISFTVSDTGIGMSPSQQQQLFQPFTQGDTSTTKKYGGT 535

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I   F  + GG + + S     +T    +P +E
Sbjct: 536 GLGLAISRHFCQMMGGEIIVKSQLGLGSTFTVYLPLQE 573


>gi|309789938|ref|ZP_07684514.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227958|gb|EFO81610.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 448

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 4/241 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ ++E+   L +A++ K+ F+ ++S+ELR+PL  I+GFT  L     G L + Q + + 
Sbjct: 210 EQRVSERTTELERANQAKDMFLANMSHELRTPLNAILGFTGTLLMKLPGPLTADQERQLN 269

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  LL+++NDILD+A + AG +++    +   ++LNEV   +     +  + + +
Sbjct: 270 TIQRSARHLLSMINDILDMAKIQAGHLEIQPEPVNCAEVLNEVFDHLRPIAEQKRLELAL 329

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I+   L     DR+ L QI   +++NA+ F+ +G   I    RD       V + G  I 
Sbjct: 330 IAPPTL-QIQTDRRALNQIMLNLVNNAIKFTDRGGVRIEVEPRDT-QVAIRVVDTGIGIR 387

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E     +F  F  V++A   QR G GLGL I +    L GG + + S     +T    +P
Sbjct: 388 EADLGLLFVEFGRVNSAEVRQREGTGLGLRISQRLAELLGGRIEVQSCYGEGSTFTLYLP 447

Query: 790 S 790
            
Sbjct: 448 Q 448


>gi|320103390|ref|YP_004178981.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
 gi|319750672|gb|ADV62432.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
          Length = 622

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 12/244 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N AL + + +K+ F+  +S+ELR+PL +I+GF+++L  S    L+ K  ++   I 
Sbjct: 310 LAQANLALYEMNRLKSDFLATMSHELRTPLNSILGFSEVLAGSD--QLSEKHRRFANNIM 367

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S  +LL ++NDILDLA +++G M++        DL   +   +       NI +K + D
Sbjct: 368 TSGRMLLTMINDILDLAKIESGKMEVRIENCSARDLCESLAAVMRDAFEAKNIDLKCVID 427

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733
            +L     D  ++ +I S +LSNA+ F+ +G  V L+   +    +  V++ G  I PED
Sbjct: 428 DQLPLIRQDPGKVKRIVSNLLSNAVKFTPEGGRVELRVFAEGRFLVIQVEDTGIGIAPED 487

Query: 734 MCKSVFNRF--VSNAHRG------QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +++F +F  ++   R       + +G GLGLSIV     L  G + + S     +   
Sbjct: 488 Q-EAIFEKFRQLAQPQRDDAVLTREHQGTGLGLSIVRELCRLLEGDIKLVSQPGLGSIFT 546

Query: 786 CRIP 789
            R+P
Sbjct: 547 VRLP 550


>gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
 gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
          Length = 894

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 14/262 (5%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++   +VT   +AE AL    +    A E +  F+   S+ELR+PL  IIGF+++++  
Sbjct: 631 ALICLYDVTAYKQAEEALMAARQQAISAMEQQRKFIAAASHELRTPLNAIIGFSEMIQMQ 690

Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G + +++  +Y   I  +   LL+L+NDIL L  +  G      + + LND   E++Q
Sbjct: 691 TFGPVGDTRYQEYATDILNAGRHLLDLINDILTLGRMQPGAAAAADAPVCLND---EIRQ 747

Query: 657 SIATKMHENNIR---IKVISDGKLGSFVADRQ--RLLQIFSKILSNAMDFSSKGSTV-IL 710
           ++  +M E+  R   I V+ +      + D +   + QI   +LSNA+ F+  G  V ++
Sbjct: 748 AL--RMVEDQARARSIAVVWEEPPYRILLDMEARAVRQILLNLLSNAVKFTPPGGQVSVV 805

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
               D  D    + + G  I E   + VF  F    N +     G GLGLSIV + +  H
Sbjct: 806 LGGHDGEDLWLEISDTGIGIAEADMEHVFEPFFRAGNVYTRSTEGTGLGLSIVRALMEAH 865

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG VS+ S     TT+   +PS
Sbjct: 866 GGRVSLRSRYGQGTTLRITLPS 887


>gi|209363989|ref|YP_001424551.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|207081922|gb|ABS77049.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 683

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+ L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+
Sbjct: 281 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 337

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   ++ IS +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H
Sbjct: 338 DEQQGQIDVISQTGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 397

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           +  I++K      + S V  D +R+ Q+   +LSNA+ F+ KG   +    LK       
Sbjct: 398 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 457

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+VK+ G  + +    S+FNRF  +++ ++ +  GVGLGLSIV+  +   GG +S++S
Sbjct: 458 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 517

Query: 777 SDEGVTTINCRIP 789
                +   C IP
Sbjct: 518 EPGVGSEFTCIIP 530


>gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 549

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 132/265 (49%), Gaps = 17/265 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++++    E  L +    L +A  +K+ F+ ++S+ELR+PL  I+G ++ LK   LG+L
Sbjct: 140 VDISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGAL 199

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL----LNEVKQSI 658
           NS Q   +  I  S   LL L++DILD++ ++AG ++L  + + + +L    L  V    
Sbjct: 200 NSNQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLA 259

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------- 711
            TK  + NI I +    +      D +RL Q+   +LSNA+ F+ K   + L        
Sbjct: 260 FTK--QINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSP 317

Query: 712 --AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
             A        FSV +NG  I  D    +F  F  + ++   Q  G GLGL++V+  I L
Sbjct: 318 NAAISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIEL 377

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           HGG V +SS     +     +P +E
Sbjct: 378 HGGCVEVSSQLGKGSCFTVYLPYQE 402


>gi|297569748|ref|YP_003691092.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925663|gb|ADH86473.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 496

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 127/241 (52%), Gaps = 3/241 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL      L++ D +K++F   +S+ELR+PL +I   T +L     G +N+ Q + +  I
Sbjct: 257 ALNSMCHKLQELDNLKSAFFADMSHELRTPLASIKEGTHILLDRVGGEINNHQQRILLII 316

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S  S  L+N VN +LDLA ++AG++  +YS   L+ L+ +  Q +        +RI V  
Sbjct: 317 SQESDRLINRVNSLLDLARMEAGMVVDHYSRTSLSTLVRDALQGLQPLAEAKGVRI-VNH 375

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D++R++Q+   ++ NA+ F+ +G T+ L A   +     +V++ G  IPE 
Sbjct: 376 IAALPPVNVDQERIMQVVRNLVGNAIKFTPEGGTITLTATVRDKMLEVAVQDTGIGIPEG 435

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +F +F  V  A   + +G GLGL++V+  I  HGG V  +S  E  +T    +P  
Sbjct: 436 DLERIFLKFQQVLPARSDKVKGSGLGLAMVKQIILAHGGKVWATSQIEKGSTFYFTLPLA 495

Query: 792 E 792
           E
Sbjct: 496 E 496


>gi|159901028|ref|YP_001547275.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894067|gb|ABX07147.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 386

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 17/234 (7%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E++L    E    A+  K+ F+  +S+ELR+PL  IIG+++LL+       +++  Q   
Sbjct: 138 EQSLLAAKEEAELANRSKSQFLAMMSHELRTPLNAIIGYSELLQE------DAEADQLPN 191

Query: 612 YISASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y+   STI      LL L+ND+LDL+ ++AG M+L        +L+N+++  I  ++ +N
Sbjct: 192 YVQDLSTIRNAGVHLLGLINDVLDLSKIEAGRMELFGQDFRAIELINDLELYIQPQIAKN 251

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVK 724
           N R+ +     LG   +D Q+L QI   +L+NA  F+ +G T+ L+A RD GD++ F V 
Sbjct: 252 NNRLVLDVAKDLGVMHSDLQKLRQILLNLLTNASKFTQQG-TITLRAKRD-GDWLHFEVV 309

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  +  +   ++F  FV        R  G GLGL+I  S   L GG + + S
Sbjct: 310 DTGIGMSSEHVANLFQPFVQAEQSTAARFGGTGLGLAISRSLARLLGGDIMVES 363


>gi|78776420|ref|YP_392735.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM
            1251]
 gi|78496960|gb|ABB43500.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans
            DSM 1251]
          Length = 1452

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 132/244 (54%), Gaps = 11/244 (4%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +T  +R + AL E  E   +A+  K+ F+ ++S+E+R+P+  IIGF+++L  S    L+ 
Sbjct: 851  ITQDIRDKEALQEAKEEAERANNSKSEFLANMSHEIRTPMNAIIGFSEILLES---DLDE 907

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            KQ   +  I++SS +LL+++NDILD + ++A  +++ +    L  +L+++K        +
Sbjct: 908  KQLHQLHKINSSSKMLLSIINDILDFSKIEANRLEIEHREFNLESILSKIKMLFKQTALD 967

Query: 665  NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---GDF 719
              +     + +G     VAD  R+ Q+   +L NA+ F+ +G+  V LK ++ +      
Sbjct: 968  KGLEFYCNVEEGVPSMVVADELRITQVLINLLGNAIKFTKEGAVKVDLKISKKDEKSATL 1027

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            +FSV ++G  I ++  + +F  F        RR  G GLGLSI    ++  GG + + S 
Sbjct: 1028 LFSVIDSGIGISQNQIEKLFKPFSQADDSITRRYGGSGLGLSISSRLVSAMGGEIDVKSK 1087

Query: 778  DEGV 781
             EGV
Sbjct: 1088 -EGV 1090


>gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 916

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+L   + +Q  Y+  I  S+
Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLSTIEKSA 329

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N++LD + ++AG + L      L DLL +    +A   HE  + +   +  D 
Sbjct: 330 DSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVSLIYRDT 389

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL Q+ + ++SNA+ F+ +G T++++A     + D+     SV + G  +
Sbjct: 390 PL-ALRGDPLRLKQVLTNLVSNAIKFTREG-TIVMRAMVEDESTDSAQLRISVMDTGIGL 447

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            ++  +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 448 SDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496


>gi|256005870|ref|ZP_05430818.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255990174|gb|EEU00308.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316941556|gb|ADU75590.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 463

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624
           ++KN F+  +S+ELR+PLT+I+G+   + T   G ++SK+   + ++ I   S  L  LV
Sbjct: 243 KMKNDFIASISHELRTPLTSIMGW---IITINSGDIDSKEELKEGLDIIERESKRLAELV 299

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +++LD +  DAGI+ L  S + L +LL  +K+ +  +     I + +  D  L    AD 
Sbjct: 300 DELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDVDEHLPLIEADE 359

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+F  I+ N+  F+ KG  + +   ++    +  ++++G  IPE+    V  RF  
Sbjct: 360 NRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENGVLIRIEDSGCGIPEEDLPRVKQRFFK 419

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++     G GLGL+I +  + LH G + I S+    T ++  +P
Sbjct: 420 GSN--VVSGSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILP 462


>gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
 gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
          Length = 1175

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 12/243 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++++    E +L E  +    A+  K+ F+ ++S+E+R+PL  IIGFTDLL  + L   
Sbjct: 634 IDISNLKEMEYSLVEARKKAEAANRSKSEFLANMSHEIRTPLNGIIGFTDLLMQTSLAPF 693

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q +Y++ +  S+  L++L+NDILD + ++AG ++LN     L +L  +    +  + 
Sbjct: 694 ---QQKYMQTVHNSANTLMDLINDILDFSKIEAGKLELNEERTDLIELCTQTVDIVKHQA 750

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RD 715
           H+  + + +     +  FV AD  RL QI   +L NA+ F+ +G   +   A       +
Sbjct: 751 HQKGLEMLLQISPDVKRFVQADSIRLRQILINLLGNAVKFTDQGEVALTVTASNTIAQEN 810

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +F F +++ G  I       +FN F        R+  G GLGL+I    +NL G  + 
Sbjct: 811 EAEFKFEIRDTGIGIDPKNINKIFNAFDQEDVSTTRKYGGSGLGLTISNRLLNLMGSKLK 870

Query: 774 ISS 776
           ++S
Sbjct: 871 VNS 873


>gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040]
          Length = 770

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+AL    E    A   K+ F+ ++S+E+R+P+  +IG  ++L+ ++L      Q  Y E
Sbjct: 231 EKALEHAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETEL---TPDQELYTE 287

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL+++NDIL  + ++AG ++L  +T  L  ++ +V   +A K  E  +++ +
Sbjct: 288 TIVKSGNALLSIINDILSFSKIEAGKLELTQATFNLRTVIEDVIMLLAPKAAEKWVQLTL 347

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNG 727
             D  L  F   D  R+ QI + ++ NA+ F+S+GS  I       G   D   SV + G
Sbjct: 348 RYDPDLAEFYDGDAGRIRQIVTNVVGNAVKFTSRGSVHIDVTGVARGQLMDLRISVVDTG 407

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG---VT 782
             IP +    +F+ F  V  A      G GLGL+I    + +  G + ++SS EG   V 
Sbjct: 408 IGIPAEKLDRIFHAFEQVDGAATRNFEGTGLGLAISTRLLQMMKGRIHVTSS-EGKGSVF 466

Query: 783 TINCRIPSKE 792
           TI+  +P+ +
Sbjct: 467 TIDISLPTSD 476


>gi|304309732|ref|YP_003809330.1| predicted histidine kinase [gamma proteobacterium HdN1]
 gi|301795465|emb|CBL43663.1| predicted histidine kinase [gamma proteobacterium HdN1]
          Length = 920

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 128/241 (53%), Gaps = 13/241 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK EA RK +E K+ F+ +VS+E+R+P+  ++G++DLL+ +    L S   + ++ I+ S
Sbjct: 446 EKQEAERK-NEAKSRFLANVSHEIRTPMNVVLGYSDLLQQTP--GLGSDSRRALQVINRS 502

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL L+NDILD++ ++AG ++L      L  LL +++   + +    N ++ + ++  
Sbjct: 503 GEHLLTLINDILDVSRIEAGTIQLVEQDFCLQTLLMDLEVMFSERCQHQNTQLSIKAEPD 562

Query: 677 L-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSI- 730
                  DR +LLQI   ++ NA+ F+ +G  ++    +  G   F     VK+ G  I 
Sbjct: 563 THPDLRGDRGKLLQILINLVGNAVKFTEQGQILLTVNTQPMGADQFELNIIVKDTGCGIA 622

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PED  K VF+ +      GQR  +G GLGL+I   F    GG +   S  E  TT   RI
Sbjct: 623 PEDYDK-VFSLY-QQTESGQRLGKGTGLGLAISREFARRMGGDLVFESEIEKGTTFYLRI 680

Query: 789 P 789
           P
Sbjct: 681 P 681


>gi|182677673|ref|YP_001831819.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633556|gb|ACB94330.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 728

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 176/391 (45%), Gaps = 42/391 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +Y + V+     +D  ++GVAV   +GRI   N +  +L+  +   +        IA   
Sbjct: 347 RYESEVRELHAILDTATDGVAVLDAEGRILTLNRSGEALFGYDRGEVLSQPFTMLIAPAS 406

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------VLEYSIIPL-------- 533
            R        D F  + T          G L LL+D         +   IP+        
Sbjct: 407 RRR-----AMDYFEGVKTG---------GVLSLLNDGREIFGLARQGGTIPIFMTLGRIG 452

Query: 534 --PNAQTM----------LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               A+TM          +   +++   + ER L    +   +A  +K+ F+  VS+E+R
Sbjct: 453 LFVTAETMPEQGVFEKYCVLLRDMSHWKKIERELEAARKEAERASTLKSDFLAKVSHEIR 512

Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL  I+GFT+++   + G + N +   Y++ I  S T++++LVND+LDL+ ++AG M L
Sbjct: 513 TPLNAILGFTEVIMDERFGPIGNERYKDYLKDIHMSGTLVMSLVNDLLDLSKIEAGKMDL 572

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           ++  +  N ++ +    +  + +   I +++     L   +AD + L QI   +LSNA+ 
Sbjct: 573 DFVAVDTNQIIADCVSLMQPQANREGILVRLALAPALPPLLADERSLRQIVLNLLSNAVK 632

Query: 701 FSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           F+  G  V++     ++G  +  +++ G+ + E+        F   +     +G GLGL 
Sbjct: 633 FTEPGGQVMVATKLMEDGKTLIRIRDTGAGMSEEEIGIALEPFRQLSTSRSNQGTGLGLP 692

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + ++ +  +    SISS  +  T +    PS
Sbjct: 693 LTKALVEANRASFSISSKKQEGTVVEILFPS 723


>gi|144898581|emb|CAM75445.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 846

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 188/430 (43%), Gaps = 33/430 (7%)

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           +A+ + E     TW+ ++  V +   T    W      T  V+  +   GG + +F + T
Sbjct: 290 TADIILETAARTTWRGDVRIVRR---TGVMIW------TEMVVTAAASEGGYLVIFFDAT 340

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + + E K     +     I+ + +G A++  + R+   N  + +L    E  L PGT  
Sbjct: 341 ARREAEAKLRQARERLAAAIEAVDDGFALYDAEERLVQCNRKYIALLPQLEPWLVPGTSF 400

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDER---------KSLQGTLEL-LSDS-VLEYS 529
            ++             W L   + +    E+         ++ QG  EL L D  +L  +
Sbjct: 401 ASLIVHS---------WKL-GLVDSELAAEQYTNLRLAQFRAGQGQCELRLRDGRILRAT 450

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
               P    +    +VT    +   L    E    A+  KN F+  +S+ELR+PL  I+G
Sbjct: 451 DRRTPEGGRVSVLADVTTLNASRDHLRRALEQAEAANRSKNVFLSSMSHELRTPLNAIVG 510

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  LL+ +  G+    Q + V +I  +  +L  LV+ +L+LA +++G + L  +   L  
Sbjct: 511 FAQLLEGTPDGAFGPSQRRSVGHILRAGKLLDELVHQVLELADLESGNVHLYLTDFDLAA 570

Query: 650 LLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +  +    +  ++ E  + ++    D  +G+   D QR+ ++   +LSNA+ ++  G ++
Sbjct: 571 VALDACSRLKNRLQEGQLELRQTGCDSPVGAH-GDAQRMAEVIGHLLSNAIKYNRPGGSI 629

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINL 767
            L      G    +V+++G+ IP D+   VF  F      G    G G+GL+I  + I  
Sbjct: 630 DLSVDNMVGKVRLTVRDSGNGIPPDLHDQVFQPFNRLGGEGAAVEGTGIGLAICRALIQQ 689

Query: 768 HGGHVSISSS 777
            GG +  SS+
Sbjct: 690 MGGAIGFSST 699


>gi|254760065|ref|ZP_05212089.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
          Length = 453

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 221 HSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 280 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKMQFIK 338

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++G  I
Sbjct: 339 TIERIEL---IGDRNRLKQIFLNIVQNAIKYSHENGKVHIEATKNEGQAVIKVKDDGIGI 395

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG ++I S +   TTI  ++P
Sbjct: 396 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKLP 452


>gi|251797100|ref|YP_003011831.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544726|gb|ACT01745.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 587

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 130/237 (54%), Gaps = 9/237 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L E     +K+++++   V ++S+EL++PL  + GF + L+    G  + K+ +Y+
Sbjct: 340 ANEQLQEDMREKQKSEQLRKELVANISHELKTPLGIVKGFAEGLQD---GVADDKRERYL 396

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I   +  +  L+ D+L+L+  +   +KLN     L +L+ EV  S   ++    +R++
Sbjct: 397 ALIVNETDRMNALIMDMLELSKFEVKAVKLNIERFSLTNLVREVASSFTQQLESKQLRLR 456

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-VKNNGS 728
           V  DG+   FV ADR+R+ Q+   +LSNA+  + + S ++++  R  GD I + V+N G 
Sbjct: 457 VRQDGERELFVYADRRRIEQVLLNLLSNAIRHAIEDSAIVIEMERAEGDAIKTIVENTGP 516

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           SI E+    ++++F   A R + R   G GLGL+IV+  + LHG     ++ + GV 
Sbjct: 517 SIAEEDLNRIWDQFY-RAERSRDRKSGGTGLGLAIVKHILELHGSLYGAANIESGVA 572


>gi|161830656|ref|YP_001596642.1| PAS/histidine kinase/ATPase domain-containing protein [Coxiella
           burnetii RSA 331]
 gi|161762523|gb|ABX78165.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 331]
          Length = 669

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+ L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+
Sbjct: 267 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 323

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   ++ IS +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H
Sbjct: 324 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 383

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           +  I++K      + S V  D +R+ Q+   +LSNA+ F+ KG   +    LK       
Sbjct: 384 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 443

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+VK+ G  + +    S+FNRF  +++ ++ +  GVGLGLSIV+  +   GG +S++S
Sbjct: 444 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 503

Query: 777 SDEGVTTINCRIP 789
                +   C IP
Sbjct: 504 EPGVGSEFTCIIP 516


>gi|172065661|ref|YP_001816373.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997903|gb|ACB68820.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 770

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +R +R+L    +A  +AD    +K+  +  VS+ELR+PL  I G+ ++L+ ++  +L   
Sbjct: 372 LRTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDAL--- 428

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + Q ++ I  S+  L  +V DILD +++  G ++++   + +  L ++   +  T     
Sbjct: 429 EQQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSA 488

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I ++            D +RL Q+ + ++SNA+ F+  G  V +  +RD+   +  V +
Sbjct: 489 GIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVAD 548

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  IP      VF+ F    ++    RRG+GLGLSIV     LHGG V + S
Sbjct: 549 TGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGLHGGQVRVES 601


>gi|298481754|ref|ZP_06999944.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D22]
 gi|298271976|gb|EFI13547.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D22]
          Length = 754

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 136/272 (50%), Gaps = 12/272 (4%)

Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Y+   LP  +  T    +N+ D    E  L E    L +  E+K SF+ ++S+E+R+P
Sbjct: 488 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTP 546

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +I+GF ++L     G  + ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++ 
Sbjct: 547 LNSIVGFANILALED-GLSSVEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 605

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + +L++++  +    +  +   +K + D  L     DR+RL+Q+ +  L+NA  F+ 
Sbjct: 606 RCKVRELIDDIYMTHQVLIAPHLEFLKEVDDTPL-EINVDRERLIQVLTNFLNNAGKFTE 664

Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            G   +      D G     V++ G  IP +  + +F+RF       Q  G GLGLSI +
Sbjct: 665 TGYIKLGYSYLPDEGKVQIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQ 722

Query: 763 SFINLHGGHVSISS----SDEGVTTINCRIPS 790
             I   GG + + S           + CR+ S
Sbjct: 723 VIIEKLGGKIELKSEVGKGSRFTVILPCRVVS 754


>gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 956

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 129/249 (51%), Gaps = 12/249 (4%)

Query: 541 TFVNVTDSVRAE---RALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           + +++T+  +AE     L  +  A R+    A+ +K+ F+  VS+ELR+PLT ++G+  +
Sbjct: 542 SLLDITERKQAEDEREGLLARESAARQEAQEANRLKDEFLATVSHELRTPLTAMLGWVQM 601

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+T  L +   K ++ +E +  ++     L+ D+LD++ + +G ++L+   + ++ ++  
Sbjct: 602 LRTGNLPA--GKHARALETVERNARAQSQLIEDLLDVSRIMSGKLRLDVEPVEVSVVVEH 659

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +S+       +IR++   D      + D QRL Q+   +LSNA+ F+ KG  V +   
Sbjct: 660 ALESVRPAADAKHIRLQAAVD-STSHVMGDAQRLQQVVWNLLSNAVKFTPKGGRVQVFVE 718

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           R +     +V + G  I       VF+RF        R   G+GLGLSIV   + LHGG 
Sbjct: 719 RRDSSVDITVADTGHGIAAKFLPHVFDRFRQADGSTTRSAGGLGLGLSIVRQLVELHGGT 778

Query: 772 VSISSSDEG 780
           VS  S  EG
Sbjct: 779 VSAFSEGEG 787


>gi|89093358|ref|ZP_01166307.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92]
 gi|89082337|gb|EAR61560.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92]
          Length = 1068

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 138/263 (52%), Gaps = 10/263 (3%)

Query: 529 SIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           S + LP  +    M++  +VT     E  L    E    A+  K+ F+ ++S+E+R+P+ 
Sbjct: 270 SPVLLPGGKVGGVMVSLDDVTLLEEKELELRRSKEEAEAANRAKSDFLANMSHEIRTPMN 329

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+GF D+L+  K   L + Q +++  IS S   LL+L+NDILDL+ V++G +++     
Sbjct: 330 AILGFADILRRDK-KKLQTDQLKHINTISTSGQHLLDLINDILDLSKVESGRLEVEALDC 388

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704
               L++ V Q +  K  E  + +K ++D  L   +  D  R+ QI + ++ NA+ F+ +
Sbjct: 389 KPVQLIHHVLQFMKVKADEKGLELKFVADTSLPEQIETDPGRVRQILTNLIGNAIKFTEQ 448

Query: 705 GS-TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
           G  TV +    DN   +  +V + G  + +    SVF  FV       RR  G GLGLSI
Sbjct: 449 GGVTVHVSVVGDNPKQMKIAVVDTGIGMTQQQTDSVFEAFVQADSSITRRFGGTGLGLSI 508

Query: 761 VESFINLHGGHVSISSSDEGVTT 783
            + F +  GG + + +S++GV T
Sbjct: 509 SQKFAHALGGDILV-TSEKGVGT 530


>gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1130

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 5/228 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN+ L+  D++K+ F+ + S+ELR+PL  IIG  + +     G+++  Q++ +  I 
Sbjct: 439 LERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIAESMMDGATGNISELQNKNLSMIV 498

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLVNDILD + +    +KL  S++ + ++   V       + E ++++     
Sbjct: 499 VSGHRLANLVNDILDFSKLRHHSIKLKMSSVGMREVTEVVLTFSRIILKEKDVQLINAIS 558

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIP 731
             L    AD  R+ QI   ++ NA+ F+  G   I   L   ++N     +V + G  IP
Sbjct: 559 SDLPPVEADENRIQQIMHNLVGNAIKFTEVGVITISAELIDLKNNPKMAITVSDTGIGIP 618

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           ED  +++F  F       +RR  G GLGL I +  + LHGG +S+ S+
Sbjct: 619 EDKHEAIFASFEQGDGSTERRYGGTGLGLPITKQLVELHGGTISVKSN 666


>gi|323490770|ref|ZP_08095972.1| two component system histidine kinase [Planococcus donghaensis
           MPA1U2]
 gi|323395652|gb|EGA88496.1| two component system histidine kinase [Planococcus donghaensis
           MPA1U2]
          Length = 462

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 5/237 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+T+ +  L +  + +N F+  +S+ELR+PLT I G+ D+L+     +   ++ +Y+  I
Sbjct: 222 AITKLSTDLDRLKKARNEFLSSISHELRTPLTYIKGYADILERGD--TTEREREEYLSII 279

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L +L+ ++ DLA +D     +    + + +LLN V   +     E  I + V  
Sbjct: 280 REETAHLTSLIGNLFDLAKLDRNQFAIEQKKVSIAELLNSVALLVKPAFEEKQITLSVQC 339

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L ++V D +R+ Q+   IL NA   S  GS V +    +       +++ G  IPED
Sbjct: 340 SEDLQAYV-DSERIQQVLLNILDNARKHSFSGSDVRITCTEEENKIAIRIRDEGQGIPED 398

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               VF+R   V  +   +R G GLGL+I +  +  HGG ++I S     TT+  R+
Sbjct: 399 ELPFVFDRLYRVEKSRSRERGGSGLGLAIAKEIVESHGGQINIDSQVGEGTTVTVRL 455


>gi|255039493|ref|YP_003090114.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254952249|gb|ACT96949.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1204

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 15/249 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  E   ++ ++K  F+ ++S+E+R+P+  +IG  DLL  +    LN
Sbjct: 667 DITELKRNELELLKAKEHAERSLKVKEGFLANMSHEIRTPMNGVIGMIDLLGET---PLN 723

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TK 661
           ++Q  YV  I  SS  LLN++NDILDL+ ++AG M+L+ + I + +LL ++        K
Sbjct: 724 TEQKDYVLTIKRSSETLLNILNDILDLSKIEAGKMELHEAPIAVEELLLKLVSLFGQTAK 783

Query: 662 MHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF 719
              N +   V  D  +  F +AD+ RLLQI S + SNA+ F+  GS  V L   + +G F
Sbjct: 784 SKGNTLSYHVGPD--IPKFIIADQTRLLQIMSNLTSNALKFTENGSVKVFLTLVKKDGLF 841

Query: 720 ---IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 V+++G  I     + +F  F  + N+ R    G GLGL+I +    L  G + +
Sbjct: 842 HKIKVDVQDSGIGISATDKQILFTSFTQLDNSSRKSFGGTGLGLAISKQLCALMNGEIGV 901

Query: 775 SSS-DEGVT 782
            S+  EG T
Sbjct: 902 ESTLGEGST 910


>gi|253699608|ref|YP_003020797.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774458|gb|ACT17039.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 916

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 14/237 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTIL 620
           ++ A   K+ F+ ++ +E+R+PL  ++G + L LKT     L+SKQ  Y+E I +SS  L
Sbjct: 432 VQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTE----LDSKQRGYLEKIGSSSRTL 487

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679
           LN++NDILD + ++AG ++L  + + L ++L  +     +K  E  I  +V ++      
Sbjct: 488 LNIINDILDFSKMEAGKLELEQTELNLYEVLGNISDMHHSKAQEKGIEFRVRLAPDLPKK 547

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI-PEDM 734
            V D  RL Q+ + +++NA+ F+ KG  V+    L+      +  F V++ G  I PE M
Sbjct: 548 LVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRRGEGEVEVHFCVQDTGIGIAPEQM 607

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            K +F  F        RR  G GLGLSI    + L  G + + S     ++ +  +P
Sbjct: 608 GK-IFTPFTQADSSTTRRYGGTGLGLSISRQLVELMRGELQVESVPGSGSSFSFTVP 663


>gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
           265]
          Length = 869

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 11/222 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R A+  K+ F+ ++S+E+R+P+  +IG  DLL  +   +L+++Q +Y + I  S+  LL 
Sbjct: 218 RDANVAKSQFLANMSHEIRTPMNGVIGMADLLLET---ALDTEQRKYAQTIIRSARSLLK 274

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++NDILD + ++A   +L +S   L DLL E+   +  + HE+ + + V +      S +
Sbjct: 275 IINDILDFSKIEANRFELEHSDFELCDLLMEISGILGIEAHESRLELSVHVVPEIPTSLI 334

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736
            D  R+ QI   +L NA+ F+  G    V LK  ++   F+   FSV + G  IP +   
Sbjct: 335 GDSGRIRQILVNLLGNAVKFTPVGGEVGVKLKLQQETDRFVVIQFSVFDTGVGIPPEQVD 394

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           S+F  F        R+  G GLGLSI        GG +++ S
Sbjct: 395 SIFEPFTQADGSTARKYGGTGLGLSISNHLATRMGGRINVES 436


>gi|226227597|ref|YP_002761703.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
 gi|226090788|dbj|BAH39233.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
          Length = 491

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  FV +VS++L+SPL ++   T LL     G L   Q + +     S+  L  ++ 
Sbjct: 251 DRMKREFVSNVSHDLKSPLASLRETTSLLLDEVPGPLRDSQRRVLLLQRESADRLGVMIA 310

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
            +LDL+ ++AG + L Y +I +   +    Q      HE  IRI+++ +       VAD 
Sbjct: 311 KLLDLSRIEAG-LPLQYESIAVQSFMENAVQHAQASGHERGIRIQLLRNVAASVVLVADA 369

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            R+ Q+   +L NA+ FS +   V +  A      + SV + G  +  +  + VF+RF  
Sbjct: 370 DRVRQLVDNLLENAVKFSPRSDVVSVDLATHGSTLMLSVADRGPGVEREDAERVFDRFYQ 429

Query: 745 NAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A  G+    RG GLGL+I    ++ HGGH+++ + D G +    ++P
Sbjct: 430 TAA-GRAVSGRGTGLGLTICREVVHAHGGHIAVLARDGGGSVFVVKLP 476


>gi|209883557|ref|YP_002287414.1| MmoS [Oligotropha carboxidovorans OM5]
 gi|209871753|gb|ACI91549.1| MmoS [Oligotropha carboxidovorans OM5]
          Length = 740

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 125/253 (49%), Gaps = 13/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD   +E AL    +    A+  K+ F+   S+E+R+PL  I+G ++LL  ++L   N
Sbjct: 209 DVTDRAESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSNLLLDTQL---N 265

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y + +  S   L++LV ++LD + ++AG + L +    L  ++ E+ + +A +  
Sbjct: 266 PEQAAYAKAVKDSGEALVSLVEELLDFSKIEAGKIDLEHRPFHLGAMIEEITELLAPRAQ 325

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----D 718
              I I    D +L    + D  RL Q+   + SNA+ F+++G   ++    + G    +
Sbjct: 326 ARQIEIASYVDERLPREVIGDAARLRQVLLNLASNAVKFTAEGGVALIA---EPGIWPNE 382

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F +++ G  I  D  + +F  F        R   G GLGL+I E  +   GG +++ S
Sbjct: 383 ISFLIRDTGIGIAPDAQQRIFREFEQAGEEIAREYGGTGLGLAISERIVRRMGGRIALES 442

Query: 777 SDEGVTTINCRIP 789
           +    TT    IP
Sbjct: 443 AIGRGTTFEVSIP 455


>gi|320157836|ref|YP_004190214.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|326424352|ref|NP_763089.2| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|319933148|gb|ADV88011.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319999740|gb|AAO08079.2| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 646

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E    A+  K+ F+  +S+E+R+P+  IIG   LLK  +L   +S+Q QYVE I+
Sbjct: 231 LKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEMEL---SSEQKQYVEMIN 287

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            SS  LL+++NDILD + ++AG M ++     L+DL+ ++      K H  N++  V ++
Sbjct: 288 HSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAHAKNLQFVVELA 347

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSS 729
           +    +   D + L Q+ + +L NA+ F+ +G   ++ A   +   I    F V ++G  
Sbjct: 348 EDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVVAKELDAQHIPHIRFQVFDSGIG 407

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I ++  + VF RF        R+  G GLGL+I    ++L GG + + S
Sbjct: 408 IAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELKS 456


>gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25]
          Length = 1059

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 131/233 (56%), Gaps = 14/233 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+A   K++A+ +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L + Q  YV
Sbjct: 389 AEKA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---PLTATQRDYV 441

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   I+ K  E  I ++
Sbjct: 442 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQ 501

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGD--FIFSVKN 725
           V IS       + D  R+ QI    +SNA+ F+ +G   +    R+  NG+    FSVK+
Sbjct: 502 VSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVKD 561

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +G  I E   K +F  F    +   R+  G GLGL+I    + L GG + + S
Sbjct: 562 SGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLES 614


>gi|172036692|ref|YP_001803193.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698146|gb|ACB51127.1| probable two-component hybrid sensor and regulator [Cyanothece sp.
           ATCC 51142]
          Length = 835

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 133/252 (52%), Gaps = 9/252 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +++   +T+  +AE AL +  E    A++ K  F+ +VS+ELR+P+  I+GF +LLK  K
Sbjct: 318 LVSIREITERKKAEEALIKAKEEADLANQAKTEFLANVSHELRTPMNAILGFAELLKL-K 376

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L +      +Y+E I  SS  LL+L+ND+LD+  V+AG ++LNY    +  LL E+    
Sbjct: 377 LKAQEPPIYEYIETIYNSSNSLLSLINDLLDINQVEAGKIELNYHGFSVRTLLTEIINIF 436

Query: 659 ATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--- 714
           + +  +  +++ V     +  F+  D  RL QI   ++ N++ F+SKG   +  + +   
Sbjct: 437 SNQASKQQLQLLVDIQDNVPEFINFDSLRLRQILVNLIGNSLKFTSKGYIKVSLSMQNLY 496

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            + G     V++ G  I ++  + +F  F+ +  +   R  G GLGL I +      GG 
Sbjct: 497 GNYGTLKIEVQDTGIGIKDEDKQQIFEAFIQSQGQDNYRYGGNGLGLFITQKITEFLGGT 556

Query: 772 VSISSS-DEGVT 782
           +++ S   EG T
Sbjct: 557 ITLDSEWGEGST 568


>gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 999

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           ++ AL +  E    A+  K+ F+  VS+ELR+PL  I+G++ L+  +   SL+ +Q +Y+
Sbjct: 515 SQTALQKAAERAEIANRAKSEFLSRVSHELRTPLNAILGYSQLMNRNT--SLSPQQKEYI 572

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I+ S   LL+L+ND+L+++ ++AG   LN ++  L  LL+ ++++   K     + + 
Sbjct: 573 EIINRSGEHLLSLINDVLEMSKIEAGQQTLNENSFDLYALLDSIEKTFQLKASAKKLGLI 632

Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNG 727
                 +  FV  D  +L Q+   +L NA+ F+  G+  +    ++       FSV + G
Sbjct: 633 FQRSQDVPQFVVTDESKLRQVLFNLLDNAIKFTQTGNVTLWVTTKEAPCLKIFFSVSDTG 692

Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             I E     +F+ FV + A     +G GLGL I   FI L GG +++++
Sbjct: 693 PGIAESELSVLFDPFVQTQAGLKSMQGTGLGLPISRQFIELMGGELTVNT 742


>gi|163793550|ref|ZP_02187525.1| two component sensor kinase [alpha proteobacterium BAL199]
 gi|159181352|gb|EDP65867.1| two component sensor kinase [alpha proteobacterium BAL199]
          Length = 414

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 11/228 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K  F+ ++S+ELR+PL  IIG ++L+++   G++ + K ++Y   I+ S   LL+L+NDI
Sbjct: 184 KTRFLANMSHELRTPLNAIIGMSELIRSELWGAVGHPKYAEYATDINDSGLHLLDLINDI 243

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + V+ G + L+   I + DLL + +++IA  + E ++   V   G      ADR+ +
Sbjct: 244 LDFSRVEMGKVTLHDEDIDVTDLLEQSRRTIAGLLEERDLTCVVRVSGSP-ILTADRRAM 302

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRF---- 742
            Q+   +LSNA+  +  G  V + +  D  G     V++ G  IP +  + +   F    
Sbjct: 303 RQMLLNLLSNAVKHTPPGGRVTITSDVDGQGGLAIVVEDTGRGIPAERLEWITEPFNVDE 362

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +S   +G   G GLGL+I +  +  HGG +SI SS+   T++    P
Sbjct: 363 EISVTRQG---GAGLGLAITKRLVERHGGQISIDSSEGFGTSVRLSFP 407


>gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 858

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 126/223 (56%), Gaps = 15/223 (6%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLN 622
           A+  K  F+ ++S+++R+P+  IIGFT L  T     +++++    Y++ IS SS  LL+
Sbjct: 345 ANRAKREFLFNMSHDIRTPMNAIIGFTSLAATH----IDNREQVLDYLKKISTSSQHLLS 400

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFV 681
           L+ND+LD++ +++G +K+    + L DL+++V+  I   +    + + + + D +    +
Sbjct: 401 LINDVLDMSRIESGKVKIEEKAVHLPDLVHDVRSIIQPNVSAKRLSLFIDTVDVENEDII 460

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMC 735
            D  RL QI   ILSNA+ F+  G  + ++ A  NG       + F +K+NG  + E+  
Sbjct: 461 TDPLRLNQILLNILSNAIKFTPTGGMISIRIAEKNGAPAGRACYEFRIKDNGIGMSEEFQ 520

Query: 736 KSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           K +F  F    N+     +G GLG+SI ++ ++L GG ++I S
Sbjct: 521 KHIFEEFAREENSTVSGIQGTGLGMSITKNIVDLMGGSITIES 563


>gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 909

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 136/254 (53%), Gaps = 10/254 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VN T   +  + L E  +    +D +K++F+ ++S+E+R+PL  I+GF++L+  S+  + 
Sbjct: 525 VNNTKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPA- 583

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y+  I +++ +LL L+NDILDL+ +++GI+     T  L  + NE+   I  K+
Sbjct: 584 --EKEEYMSIIQSNNELLLRLINDILDLSKIESGILDCKRETFNLAKVCNELYTMIQPKI 641

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              ++  ++ +         DR RL Q++   L+NA+  +  G   +  +    G  I+ 
Sbjct: 642 TNPDVEFQMDNSSPDCWIFLDRSRLKQVWMNYLTNAVKCTKSGYIKMGYSIEREGIRIY- 700

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V+++G  IPE++ + VF RF       Q  G GLGL+I  + I   GG V  +S+    +
Sbjct: 701 VEDSGVGIPEELQERVFGRFQKLNEFAQ--GTGLGLAISRAIIEGAGGEVGFTSTPGIGS 758

Query: 783 T----INCRIPSKE 792
           T    I C I ++E
Sbjct: 759 TFWAWIPCEISTQE 772


>gi|281418943|ref|ZP_06249961.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|281407400|gb|EFB37660.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 463

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624
           ++KN F+  +S+ELR+PLT+I+G+   + T   G ++SK+   + ++ I   S  L  LV
Sbjct: 243 KMKNDFIASISHELRTPLTSIMGW---IITINSGDIDSKEELKEGLDIIERESKRLAELV 299

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +++LD +  DAGI+ L  S + L +LL  +K+ +  +     I + +  D  L    AD 
Sbjct: 300 DELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDVDEHLPLIEADE 359

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+F  I+ N+  F+ KG  + +   ++    +  ++++G  IPE+    V  RF  
Sbjct: 360 NRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENGVLIRIEDSGCGIPEEDLPRVKQRFFK 419

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++     G GLGL+I +  + LH G + I S+    T ++  +P
Sbjct: 420 GSN--VVSGSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILP 462


>gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
 gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
          Length = 1334

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T    AE  L    +A  +A++ K++F+ ++S+ELR+P+  I+G   LL+ +    LN
Sbjct: 558 DITQQREAENILQSARQAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRKT---GLN 614

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +KQ+ Y     A++  LL L+NDILD + ++AG M L      ++ +L ++   +++ + 
Sbjct: 615 NKQADYAVKSEAATRTLLRLLNDILDFSKIEAGKMVLECIPFDIHVMLRDLAVILSSNLK 674

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGD 718
              + +    D  L  FV  D  RL QI + +  NA+ F+ +G  V    +LK       
Sbjct: 675 IKKVEVLFDIDPTLPQFVEGDSMRLQQILTNLGGNALKFTEQGEVVLFIKVLKQDSQQVT 734

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I  +  +S+F  F        RR  G GLGL I + F+ L GG + + S
Sbjct: 735 LHFGVRDTGIGIAPEHQESIFGGFTQAEASTTRRFGGTGLGLVISQRFVALMGGRLELES 794


>gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
 gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
          Length = 1055

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 131/233 (56%), Gaps = 14/233 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+A   K++A+ +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L + Q  YV
Sbjct: 385 AEKA---KDDAI-EASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---PLTATQRDYV 437

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   I+ K  E  I ++
Sbjct: 438 DTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQ 497

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGD--FIFSVKN 725
           V IS       + D  R+ QI    +SNA+ F+ +G   +    R+  NG+    FSVK+
Sbjct: 498 VSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVKD 557

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +G  I E   K +F  F    +   R+  G GLGL+I    + L GG + + S
Sbjct: 558 SGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLES 610


>gi|302337012|ref|YP_003802218.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301634197|gb|ADK79624.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 944

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 11/247 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++T  +V+D +R    L +  +    A + K+ F+ ++S+E+R+PL+ I+G TDLL + 
Sbjct: 399 AVITMKDVSDHLRLVDELEQARQMAVTASDSKSRFLANISHEIRTPLSGIMGMTDLLLS- 457

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G L   Q + +  +  +  +LL+++N +L+++ +++G + L      L   +N+    
Sbjct: 458 --GPLTEDQRENLFLMKEAEELLLDIINKVLEISKIESGKLSLELEPFRLRGAINKAALP 515

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAA 713
           I     E  I + + +S       + D  RL Q+ +  LSNA+ F+  G+   TV+  + 
Sbjct: 516 IFMGCKEKGIVLDIDVSPSIPDRLIGDGSRLTQVLTNFLSNALKFTESGTITLTVVETSR 575

Query: 714 RDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
            +NG  +  FSVK+ G  IP D   ++F+ F  + +    + +G GLGL+I +  + L  
Sbjct: 576 NENGKIELFFSVKDTGIGIPSDAQTTIFDDFRQIDSGPAKRHQGTGLGLAISKKLVELMD 635

Query: 770 GHVSISS 776
           G + + S
Sbjct: 636 GSIGVES 642


>gi|160889867|ref|ZP_02070870.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
 gi|156860859|gb|EDO54290.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
          Length = 896

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 131/247 (53%), Gaps = 9/247 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + +R L    E    +D +K++F+ ++S+E+R+PL  I+GF+ ++  S   +  
Sbjct: 487 DITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDE 543

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y E + +++  LL L+N+ILDL+ +++GI++   + + L+ L  E+  +   +  
Sbjct: 544 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 603

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           E    I   SD  +     D+ R+ Q+ S ++ NA  F++ G   I    R  G ++ F 
Sbjct: 604 EGVELIYEPSDENI-VIDGDKNRIFQVISNLIGNAFKFTTSGH--ISYGYRREGKYVAFH 660

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  I  D    VF RFV   +  Q  G GLGLSI ++ I   GG++S++S     T
Sbjct: 661 VTDTGMGIAPDKVDRVFERFVKVNNFAQ--GTGLGLSICKTIIERLGGNISVTSEVGKGT 718

Query: 783 TINCRIP 789
           T    +P
Sbjct: 719 TFTFVLP 725


>gi|125974417|ref|YP_001038327.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|125714642|gb|ABN53134.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
          Length = 463

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624
           ++KN F+  +S+ELR+PLT+I+G+   + T   G ++SK+   + ++ I   S  L  LV
Sbjct: 243 KMKNDFIASISHELRTPLTSIMGW---IITINSGDIDSKEELKEGLDIIERESKRLAELV 299

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +++LD +  DAGI+ L  S + L +LL  +K+ +  +     I + +  D  L    AD 
Sbjct: 300 DELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDVDEHLPLIEADE 359

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+F  I+ N+  F+ KG  + +   ++    +  ++++G  IPE+    V  RF  
Sbjct: 360 NRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENGVLIRIEDSGCGIPEEDLPRVKQRFFK 419

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++     G GLGL+I +  + LH G + I S+    T ++  +P
Sbjct: 420 GSN--VVSGSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILP 462


>gi|309790318|ref|ZP_07684885.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227652|gb|EFO81313.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 987

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 3/254 (1%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T L   N+T+    ER L E  EA   A+  K+ F+  +S+ELR+PLT+IIG+ +LL  +
Sbjct: 453 TELIVRNITERKEVERTLREAKEAADSANRAKSQFLATMSHELRTPLTSIIGYAELLNRA 512

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N +    +  I  +   LL ++ND+LDL+ ++AG M+++ + + L+ L+  V  +
Sbjct: 513 LTPIANDEVMHDLRRIQVAGAHLLAIINDVLDLSKIEAGHMQVHPAPVRLDKLVQAVVDT 572

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +   +  N  ++ V      G  V D   + QI   +LSNA  F++ G  + L+ +    
Sbjct: 573 VQPVIVRNTNQLLVQGLDDAGLMVTDEVHVRQILLNLLSNAGKFTTNGQ-ITLRISGTPE 631

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F+V + G  I  +  K +F  FV       R+  G GLGL++      L GG +++ 
Sbjct: 632 MVYFAVHDTGIGIHPEQAKQLFRDFVQVDASTTRKYGGTGLGLALSRRLARLLGGDITLE 691

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    +P
Sbjct: 692 SALGEGSTFTLSLP 705


>gi|156743113|ref|YP_001433242.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234441|gb|ABU59224.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 911

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 19/231 (8%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D +K  F+  VS+ELR+P+T+I GFT LL    LG LN  Q +++  I +++  ++ +
Sbjct: 667 ESDRLKTEFIGTVSHELRTPMTSIKGFTQLLAMGGLGPLNETQKEFLGIIQSNAERMIAI 726

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+LD+  ++ G ++L    + + + L+ V   +  K+ +    + +     L    AD
Sbjct: 727 INDLLDITKIETGSVELEIRPLHVAETLSTVMLDLQPKIQDRQQHLSLSIPAGLPLVRAD 786

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---------------FSVKNNGS 728
            +R  QI   I+SNA+ ++ +G ++ ++A     D +                 V++ G 
Sbjct: 787 ARRFNQILFNIVSNAVKYTPRGGSITVEAREVTADAVPDEERDGLRPGRYVQIDVRDTGV 846

Query: 729 SI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I PED+ + ++ RF    N  + +  G GLGLS+V+  I L GG + + S
Sbjct: 847 GIAPEDLPR-IWERFYRTENPLKVEAGGTGLGLSLVKPLIRLLGGRIWVES 896


>gi|310827685|ref|YP_003960042.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
 gi|308739419|gb|ADO37079.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
          Length = 856

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 10/248 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L  + E   +A + K+ F+  +S+E+R+P+  I+G T++ +  +     ++    ++
Sbjct: 325 QRLLMAEKEKAERASQAKSDFLSQMSHEIRTPMNGIVGMTEVGR--RYTHNPARIENCLD 382

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS S+  LL+LVNDILD++ +++G ++L+  +     L   +     T+  E  I   V
Sbjct: 383 KISLSTQHLLSLVNDILDMSKIESGKIELHEESFDFGQLFKALTTVFYTQARERGIEYNV 442

Query: 672 ISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKN 725
             +G L    V D  RL QI + +LSNAM F+ KG  V + A       D     F V++
Sbjct: 443 YVNGALEDELVGDALRLNQILTNLLSNAMKFTPKGGKVCMTAEEIRRGEDRFWIGFEVRD 502

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I ++    +F  F        R+  G GLGL I + F+ + GG +S+ S     + 
Sbjct: 503 SGCGIAKENLGRIFEVFTQEDSGVARKYGGTGLGLPITKRFVEMMGGSISVESQVGSGSC 562

Query: 784 INCRIPSK 791
               IP K
Sbjct: 563 FRVEIPFK 570


>gi|156743019|ref|YP_001433148.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234347|gb|ABU59130.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 616

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 136/249 (54%), Gaps = 11/249 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY- 609
           A++ALT    A  + + +K+ F+ H+S+E+R+PLT I+G+  LL+ + +   N  Q++  
Sbjct: 360 AQQALTSALRAAEEGNRVKSVFLAHMSHEIRTPLTAIMGYCQLLE-AGIERQNLAQTRAD 418

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +S  LL+L N++L++A ++AG  +++     + D++ +V  ++   +  N   +
Sbjct: 419 LEAIRVASGHLLSLANNVLEMAWIEAGRSEVHDIAFEVMDVVLDVIATVQPLIRRNRNHL 478

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FSVK 724
           +V      G    D  ++ QI   ++SNA  F++ G   +  A    GD +     F V 
Sbjct: 479 RVEGAEHAGVVQGDPAKVRQILLNLVSNAAKFTTGGEVAVRVA--HIGDALQPRIQFQVS 536

Query: 725 NNGSSIPEDMCKSVFNRF-VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + GS I  D  + +F  F ++  H G+ +RGVGLGL+I   +  L GG +SI S+    T
Sbjct: 537 DTGSGIAPDRIERLFMPFAIAEEHVGRDQRGVGLGLAISRYYCRLMGGDLSIESALGRGT 596

Query: 783 TINCRIPSK 791
           T+   IP++
Sbjct: 597 TVTFWIPAR 605


>gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 744

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 9/252 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   RAE AL    E   +A   K+ F+  VS+E+R+P+  IIG   LL  ++   L+
Sbjct: 213 DITARKRAETALVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSDTR---LS 269

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+Q  YV  IS S++ LL L+ D+LD + ++AG ++L    +   +L+  V + +A +  
Sbjct: 270 SEQRTYVAAISTSASALLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIELMAVRAF 329

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719
              I +   I+     + +AD  RL QI   +L NA+ F+ +G    TV           
Sbjct: 330 TKKIGLGCHIAPTVPDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTVTTTIHDGAPKL 389

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F V + G  I +D    +F  F        R+  G GLGL+I    I+   G V++ S+
Sbjct: 390 AFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDAMEGTVTVDSA 449

Query: 778 DEGVTTINCRIP 789
                T    IP
Sbjct: 450 PGEGATFTVYIP 461


>gi|187933272|ref|YP_001886868.1| histidine kinase [Clostridium botulinum B str. Eklund 17B]
 gi|187721425|gb|ACD22646.1| histidine kinase [Clostridium botulinum B str. Eklund 17B]
          Length = 432

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 122/214 (57%), Gaps = 6/214 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN  +  VS++LR+PLT+IIG+ DLLK ++      K   Y+E I   +  L  L+N++ 
Sbjct: 211 KNELITSVSHDLRTPLTSIIGYVDLLKKNEFND-KEKFDNYIEVIDERTKSLNRLINELF 269

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFV-ADRQR 686
           +   + +  +KLNYS + +  L+ ++        ++ N+  IK I+D  +  F+ AD ++
Sbjct: 270 EYTKLTSHDIKLNYSRLEIVSLIEQMVGEYTPIFNKENLEVIKDITDKDI--FINADIEK 327

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-N 745
           ++++   +L+NA+ +S K S V++K   +N   + SV N    I ED  K++F RF   +
Sbjct: 328 IVRVLENLLTNAIKYSVKNSKVLIKLFEENNYVVVSVSNKAKDITEDDLKNIFERFYKVD 387

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             R ++   GLGLSIV+  + LH G + ++ +++
Sbjct: 388 KSRKEQDSTGLGLSIVKRIVELHNGEIDVNLNED 421


>gi|168704693|ref|ZP_02736970.1| CheY-like receiver protein [Gemmata obscuriglobus UQM 2246]
          Length = 718

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 112/215 (52%), Gaps = 10/215 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+ +VS+ELR+PL  IIG TDL   +  G L   Q   +  +  S+  LL LVND+L
Sbjct: 226 KGEFLANVSHELRTPLNGIIGMTDL---TLGGELPPDQRDRLLLVRESAGTLLTLVNDLL 282

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687
           DLA ++AG + L      L+ ++    + +A +     + ++  I+       V D  RL
Sbjct: 283 DLAKIEAGRLDLAPVRFELHRVVGRALRLLAERARNKGLVLRCAIAPEVPTEAVGDPDRL 342

Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAA-RDNGDF--IFSVKNNGSSIPEDMCKSVFNRFV 743
           +QI + ++SNA+ F+  G  VI ++AA R  G     F V + G  IP D  + +F  F 
Sbjct: 343 VQILTNLVSNAIKFTENGEVVIHVRAAERSAGGLAVAFEVADTGIGIPADRLEKIFRPFE 402

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  R+  G GLGLSIV+    + GG V+++S
Sbjct: 403 QADGSTTRKYGGTGLGLSIVDRLTRMMGGRVTVAS 437


>gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 708

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 17/241 (7%)

Query: 549 VRAERALTEKNEALRKADEI----------KNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +RA R +TE+ EA+R  DE           K+ F+  VS+E R+PL  I+G  DL+  + 
Sbjct: 176 LRAGREITERVEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLETP 235

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q  Y+  I  S   LL L++ ILD + ++AG + L         L+  V + +
Sbjct: 236 ---LSPEQETYIRAIKTSGEALLTLIDGILDFSKIEAGRLDLACEPFDPAALVESVVELL 292

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  + I   ++D      + D  R+ QI   +  NA+ F+  G  V + A R   
Sbjct: 293 APRAQDKGLEIAADLADDLPPRVLGDGDRVRQILLNLAGNAVKFTEAGG-VGITAERVGE 351

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           D + +V + G  IPE+    +F  F        RR  G GLGL+I    ++  GG +  +
Sbjct: 352 DLVLAVHDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIETT 411

Query: 776 S 776
           S
Sbjct: 412 S 412


>gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 454

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 132/273 (48%), Gaps = 8/273 (2%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +++S+ P+P+ +  + F+     ++T   RAE AL    +    A+  K+ F+  VS+EL
Sbjct: 177 VDFSVKPVPDHEGNILFLVPEGRDITQRKRAEAALVAAKQEAEAANRAKSQFLATVSHEL 236

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           R+PL  +IGF++ +     G  + ++  +Y++ I ++   L  L+ DILD++ ++AG  +
Sbjct: 237 RTPLNAVIGFSEAILAGATGPASLERCVEYMDLIHSAGQHLRALIEDILDVSRIEAGRTE 296

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L+       +L+    + +  K     +   V+    L     D +R+ Q+   +  NA+
Sbjct: 297 LDEEEADPAELVRAAARLLEHKAVVTGVDFTVVIAPDLPRMRLDPRRIRQVLLNLAGNAL 356

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G  V + A         +V++ G  I  +    V+  F        RR  G GLG
Sbjct: 357 KFTPAGGRVGISAEHVPEGLALTVEDTGIGIAPEHHAKVWQAFYQADSSLSRRHQGSGLG 416

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+IV  F+  HGG VS++S     T I   +P+
Sbjct: 417 LAIVRHFVEAHGGTVSLASEAGKGTRITVLLPA 449


>gi|85715389|ref|ZP_01046371.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697810|gb|EAQ35685.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 536

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G    +   
Sbjct: 244 EQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYK 303

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ E    +  +     I
Sbjct: 304 TYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRASNRGI 363

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
            I  + +  +     D +   QI   ++SNA+ F+ +G  + LK     +G     VK+N
Sbjct: 364 TIHEVFEQGMPRIWGDERAARQIVLNLVSNAIKFTPQGGEIWLKIGWTASGGQYLGVKDN 423

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           GS I ED    V   F   SN+ +   +G GLGL I +S I+LHGG  ++ S
Sbjct: 424 GSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDLHGGTFTLKS 475


>gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
 gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
          Length = 964

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 19/251 (7%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           ++VR E+A  +  EA R     K++F+  +S+E+R+P+  I+G T LLK ++   LN++Q
Sbjct: 457 EAVRLEKARKQAEEANRA----KSTFLATMSHEIRTPMNGILGTTSLLKDTQ---LNTEQ 509

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +    I+ S  +LL ++NDILD + ++AG +        ++ ++  +         E +
Sbjct: 510 QRLTSTIAESGNVLLCILNDILDYSKIEAGQLTFEQIPFSVHTIIERLITLFTPLAQEKD 569

Query: 667 IRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
           + +       + DG LG    D  RL Q+ S +LSNA+ F+  G   + + A     + I
Sbjct: 570 LSLTYHVADNVPDGSLG----DPARLYQVLSNLLSNAIKFTEVGGIQLQVTANSTQSELI 625

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           FSV ++G  IP+D   S+F+ F        RR  G GLGL+I +  I    G VS+ S  
Sbjct: 626 FSVIDSGIGIPKDKISSLFDAFSQAEDSTSRRYGGTGLGLAICDKLIKGMQGTVSVESEL 685

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 686 HKGSTFTFTLP 696


>gi|270294120|ref|ZP_06200322.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
 gi|270275587|gb|EFA21447.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
          Length = 914

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 131/247 (53%), Gaps = 9/247 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + +R L    E    +D +K++F+ ++S+E+R+PL  I+GF+ ++  S   +  
Sbjct: 505 DITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDE 561

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y E + +++  LL L+N+ILDL+ +++GI++   + + L+ L  E+  +   +  
Sbjct: 562 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 621

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           E    I   SD  +     D+ R+ Q+ S ++ NA  F++ G   I    R  G ++ F 
Sbjct: 622 EGVELIYEPSDENI-VIDGDKNRIFQVISNLIGNAFKFTTTGH--ISYGYRREGKYVAFH 678

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  I  D    VF RFV   +  Q  G GLGLSI ++ I   GG++S++S     T
Sbjct: 679 VTDTGMGIAPDKVDRVFERFVKVNNFAQ--GTGLGLSICKTIIERLGGNISVTSEVGKGT 736

Query: 783 TINCRIP 789
           T    +P
Sbjct: 737 TFTFVLP 743


>gi|186686369|ref|YP_001869565.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186468821|gb|ACC84622.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 878

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 5/228 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++IK+ F+  +S+ELR+PL  I+G++ +L+T K     + ++  +E I  ++ +   L+
Sbjct: 505 ANQIKDEFLAVLSHELRTPLNPILGWSKMLRTRKFDQQTTNRA--LETIERNAKLQTQLI 562

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            D+LD++ +  G + LN   + L  ++    +++       +I+I+ I D  LG  + D 
Sbjct: 563 EDLLDVSRILQGKLNLNICPVNLVMVVEAALETVRLAAQAKSIQIQTIFDASLGQVMGDP 622

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   +LSNA+ F+  G  V ++    +      V + G  I  D    VF+ F  
Sbjct: 623 NRLQQVVWNLLSNAVKFTPTGGRVGIRLMEASNQIQIQVSDTGKGINPDFLPYVFDYFRQ 682

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                 R   G+GLGL+IV   + +HGG V   S  +G+  T    +P
Sbjct: 683 ADGTTTRTFGGLGLGLAIVRKVVEMHGGKVQAESPGDGLGATFTVEVP 730


>gi|302872938|ref|YP_003841571.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|307686548|ref|ZP_07628994.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|302575795|gb|ADL49807.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
          Length = 1028

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 8/246 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +  E+ LTEK   L K D++K+ F+ + S+ELR+PL  II  T+ + +   G +N  Q
Sbjct: 430 DMLNKEKTLTEK---LTKLDKLKDEFLANTSHELRTPLNGIINMTEAVLSGAEGYVNDMQ 486

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  + +S   L NLVNDILD++ +    ++LN  T     L+  V            
Sbjct: 487 RRNLSLVVSSGKRLNNLVNDILDMSRLKYKDIRLNRKTYDAKKLIFSVVNIFEYIKPNKQ 546

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725
           +RI++  + KL   + D  R  QI   I+ NAM F+ KG   +     DN  F+   +++
Sbjct: 547 VRIELSIEEKLPFILVDEDRFNQILFNIIGNAMKFTHKGKIAVSTERIDN--FVEIRIED 604

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I ED    ++N F  +  +   +  G+GLGLSI ++ + LHGG +++ S     T 
Sbjct: 605 TGIGISEDKLDQIWNAFEQIDASITRKYGGMGLGLSITKNLVELHGGSINVESQINKGTI 664

Query: 784 INCRIP 789
               +P
Sbjct: 665 FRFTVP 670


>gi|188992549|ref|YP_001904559.1| Two-component system sensor/response regulator fusionprotein,
           probable [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734309|emb|CAP52519.1| Two-component system sensor/response regulator fusionprotein,
           probable [Xanthomonas campestris pv. campestris]
          Length = 1046

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y 
Sbjct: 348 AQGQLVRNSNELSTASRYKSEFLANMSHELRTPLNSSLILAKLLADNKDHTLTAEQVKYA 407

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L+  T+ ++ ++  ++ +      +  ++++
Sbjct: 408 QAIHSSNNDLLALINDILDLSKIEAGHVELSDDTVAMSSVVQRLRDTFEPLARQKGLQLE 467

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D    +  V D QRL QI   +L+NA+ F+  G   +   +  NG   F V + G  
Sbjct: 468 ISADAAAPTQLVVDNQRLQQILKNLLANAIKFTEHGQVSLAVQSHGNGRVRFVVCDTGIG 527

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S
Sbjct: 528 IAREQNEVIFEAFRQADGSTRRRYGGTGLGLSISRDLALRMGGSISVDS 576


>gi|17230767|ref|NP_487315.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132370|dbj|BAB74974.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 889

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 123/253 (48%), Gaps = 13/253 (5%)

Query: 542 FVNVTDSVRAE--------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           F N+T+  +AE        R    + EA  +A+ +K+ F+  +S+ELR+PL  I+G+  L
Sbjct: 477 FRNITERKQAEQEREYLLMREQIARGEA-ERANRLKDDFLAVLSHELRTPLNPILGWATL 535

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK   L     ++   +E I  ++ + + L+ D+LD++ +  G + LN  ++ L   + E
Sbjct: 536 LKKRNLEEATRRRG--IETIERNAKLQIQLIEDLLDVSRIQQGKLSLNIQSVNLVHTIEE 593

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +++   +   +I IK      +G    D  RL QI   +L+NA+ F+     + +   
Sbjct: 594 ALETVRLAIEAKSIHIKTALGVNVGMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVVLE 653

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           R N      +++NG  I  +    VF  F         Q  G+GLGL+IV+    LHGG 
Sbjct: 654 RVNNSAQIQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGT 713

Query: 772 VSISSSDEGVTTI 784
           V   S+ EG+  I
Sbjct: 714 VKAESAGEGMGAI 726


>gi|167751596|ref|ZP_02423723.1| hypothetical protein EUBSIR_02597 [Eubacterium siraeum DSM 15702]
 gi|167655404|gb|EDR99533.1| hypothetical protein EUBSIR_02597 [Eubacterium siraeum DSM 15702]
          Length = 900

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 137/249 (55%), Gaps = 6/249 (2%)

Query: 548 SVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           S+  E+   EK EA  L K ++++ + ++ +S++LR+PLT+I G    L ++      + 
Sbjct: 649 SLENEKNAREKEEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLISNGNSFDEAT 708

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           ++Q    I   S  L+NLV ++L +  ++ G + L+ +  +++D++ E    +  K  E+
Sbjct: 709 KNQLYTDIYDDSMWLINLVENLLSVTRIEEGRLNLHITEDLVDDVITEALHHVNRKSVEH 768

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +I ++   D  L     D + ++Q+   I+ NA+ ++ KGS +++K  +     + S+ +
Sbjct: 769 HITVRHKEDYLLAKM--DAKLMVQVVINIVDNAIKYTPKGSNILIKTWKQGDKAVISIAD 826

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  IP++M + VF+ F S A++    RR +GLGLS+  S +N H G +++S +    T 
Sbjct: 827 DGDGIPDEMKERVFDMFYSGANKIADSRRSLGLGLSLCRSIVNAHAGKITVSDNTPHGTV 886

Query: 784 INCRIPSKE 792
               +P+ E
Sbjct: 887 FTITLPAGE 895


>gi|78778120|ref|YP_394435.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498660|gb|ABB45200.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 697

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 134/261 (51%), Gaps = 11/261 (4%)

Query: 533 LPNAQTMLTFVNV-TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           L + Q ++ ++ + TD    E A+     A   A++ K++F+  +S+ELR+PL  +IGF+
Sbjct: 440 LDSNQNIIEYIGIRTDITELENAMI----AALSAEKAKSTFLATMSHELRTPLNAVIGFS 495

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L  +K      K   +VE I+ S   LLNLVN+ILD + +++G M LN   I+L + +
Sbjct: 496 QIL-MAKDDMPKEKIRTFVEKINISGKHLLNLVNNILDFSKIESGRMNLNKREILLENFI 554

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           NE    +  +  + +I I  I  G    S  AD Q L Q+   ILSNA+ FS++ S + +
Sbjct: 555 NETILLVENEALKKDIEI--IKKGFFEISLSADEQLLKQVILNILSNAIKFSNQNSAINI 612

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
               D  + I S+ + G  + ++  + +F  F  V        +G GLGL I +  + LH
Sbjct: 613 SYKNDEENHIISICDEGVGLSQEQLEKLFKPFSQVQEHQNTALKGTGLGLVISQKIVELH 672

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G++ + +     +     IP
Sbjct: 673 NGNIEVKTQSGKGSCFYISIP 693


>gi|94263978|ref|ZP_01287780.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455650|gb|EAT05832.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 8/240 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E    +  EA   A+  K+ F+ ++S+E+R+P+  IIG   L   S+     
Sbjct: 256 DITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMNVIIGLGQLALKSEPPP-P 314

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K   Y+E I+AS+T LL L+ND LDLA ++ G M ++     L+D+LN++++ +  +  
Sbjct: 315 PKLHDYLETITASATTLLVLINDTLDLARLETGKMAIDQIPFDLSDILNKLEKLMGQRAA 374

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGD 718
           E  ++ +  ++       V D  RL Q+   + SNA+ FS KG    S  +  +  D   
Sbjct: 375 EKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSDKGEVSLSFEMADSTADTFT 434

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V++ G  I  +  +++F  F        R+  G GLGLSI    + L GG + + S
Sbjct: 435 LRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGLGLSIANRLVQLMGGKLEVES 494


>gi|95930779|ref|ZP_01313511.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95133127|gb|EAT14794.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 385

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K D++K+  +  VS+E+ +PLT ++GF + +  +++ +   +Q ++++ I   S  L  
Sbjct: 157 KKLDQMKDEMISAVSHEMSTPLTAMLGFCEFMLENEVPA--EQQQEFLQIIFKESQRLKG 214

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++++L L  + AG+  +N++ + L+ L  E+ Q        + I++   +D  L S  A
Sbjct: 215 LIDNLLSLQRMRAGMGCVNFTWLNLSMLFAELCQLFGKYSATHTIKVDCPTDFPLVS--A 272

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+  L Q    ++SNA+ +S  G TV + A +D+G  I SVK+ G  I   + + +F+RF
Sbjct: 273 DQLCLQQAMENLISNAIKYSPNGGTVTVTARQDDGQVIVSVKDEGMGISPVVQEQIFDRF 332

Query: 743 VS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
              +   GQ+  G GLGL +V+  I+LH G V +  S+EG  +  C
Sbjct: 333 FRIDTKNGQKVGGTGLGLPLVKEIISLHHGEVWV-ESEEGQGSTFC 377


>gi|322804613|emb|CBZ02165.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 617

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I     +L   K  + +  K+ QY
Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAKSYDKKEQY 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + I SVK+ G  
Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPED  +++F+RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567


>gi|270293653|ref|ZP_06199855.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275120|gb|EFA20980.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 531

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 9/240 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++    + E  L    +     D +K++F+ ++S+E+R+PL +I+GF  ++  ++
Sbjct: 283 VITSVDIDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASII--AE 340

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L     +Q +Y+  +  ++ +LL L++DILDLA ++AG +  N   + ++D   +V ++ 
Sbjct: 341 LDDREERQ-EYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDVMRNY 399

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
             K  +  + + +  D        D++RL+Q+ +  ++NA+ F+S+G  ++        G
Sbjct: 400 DIK-EDKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSEGQILLEYHPVEGTG 458

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              FSV + G  I  D   +VF+RFV  N      +G GLGLSI +S I   GG +   S
Sbjct: 459 QIEFSVTDTGMGIAPDAVATVFDRFVKLNTF---AKGTGLGLSICKSIIEHLGGTIGAES 515


>gi|153006472|ref|YP_001380797.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030045|gb|ABS27813.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 421

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 24/269 (8%)

Query: 540 LTFVNVTDSVRA-----ERALTEKNEALRKA------DEIKNSFVQHVSYELRSPLTNII 588
           L F +V + VR      ER   E+  AL +A      D ++  F+ H ++ELRSP+  I+
Sbjct: 152 LGFSSVRELVREQGAALERTALEREAALARASDLEKVDRLRAQFLAHATHELRSPVNAIV 211

Query: 589 GFTDLLKTS-KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
              +L++ + + G L   +++    + A++T L   VN+ILDL+  +AG M +    + L
Sbjct: 212 ALAELVRMACERGDLEHVRARLPMLLRAAAT-LRGTVNNILDLSKAEAGRMDVTVGPVNL 270

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +L+ EV  +    + E  + ++V   G   S  +D Q++ QI   ++SNA  F+++G+ 
Sbjct: 271 AELVAEVAATARLLVGEKPVAVEVELPGA-PSITSDAQKVRQILVNLVSNAAKFTARGAI 329

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIV 761
            +   A   G    SV++ G  I ED    +F  F      V+ +H G     GLGL I 
Sbjct: 330 RVTAVAEGEGGAAVSVRDTGCGIAEDDLPRLFVPFGQLEEAVTKSHEGP----GLGLVIT 385

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
            S   L GG V ++S     +T    +P+
Sbjct: 386 RSLTELLGGRVEVASRRGEGSTFTVHLPA 414


>gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
 gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
          Length = 1104

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 150/295 (50%), Gaps = 21/295 (7%)

Query: 510  ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-------TEKNEAL 562
            +R + Q  + +  +S+ E  I        + T +++T+  ++E  L       ++ NE L
Sbjct: 813  DRNNNQKYISMAVNSIPERKI-------AIATLLDITERKQSEETLRIYSEKLSKTNEEL 865

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            R+ D++K+ F+ ++S+ELR+P+T+I GF++L+   KLG+LN KQ + ++ I  S   L  
Sbjct: 866  RELDKMKDEFISNLSHELRTPITSIKGFSELIYNEKLGTLNEKQKEGMDSIVKSCDRLRW 925

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            L+  +L +  +    ++  +  + +  L++ V  +++ ++ E  I I+   D  L     
Sbjct: 926  LIESLLYVNKLQTEKIQYKFEPVDVETLIDGVVSNLSLQIKEKEISIEKYVDENLPYVNG 985

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI-FSVKNNGSSIPEDMCKS 737
            D+  L Q+   ++ NA  F+S G  + + A  D      +F+   VK+NG  I ++    
Sbjct: 986  DKDYLRQVLVHLMDNARKFTSSGGKIQIHAFNDADKSMDNFVHIIVKDNGIGIKKESIPD 1045

Query: 738  VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F  F  +  +   +  G GLG+ +    I  H G++ + S +   T ++ ++P+
Sbjct: 1046 IFKLFYQIDGSMTRKYEGTGLGMYLCNKIIETHNGYIWVDSEENAGTDVHVKLPA 1100


>gi|221211839|ref|ZP_03584817.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221167924|gb|EEE00393.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 767

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ ++L+ S   +L   + Q ++ 
Sbjct: 378 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDAL---RVQAIDA 434

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  L  +V DILD +++  G ++L+   + +  L  +V  +  T      I ++  
Sbjct: 435 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFPTAASSAGIALEFE 494

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S         D +RL Q+ S ++SNA+ F+  G  V +  A D+   + +V + G  I  
Sbjct: 495 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 554

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +    VF+ F    ++    RRG+GLGLSIV   + LHGG V + S+     TT   ++P
Sbjct: 555 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 614

Query: 790 S 790
           +
Sbjct: 615 A 615


>gi|153011989|ref|YP_001373201.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
 gi|151563877|gb|ABS17372.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
          Length = 1141

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 127/253 (50%), Gaps = 3/253 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +  +D  RA  ++  K   L ++ + K+ F+ ++S+ELR+PL + +    LL  +   +L
Sbjct: 449 IQRSDLERANASVQLKAAELERSSQYKSDFLANMSHELRTPLNSSLILAKLLADNPHENL 508

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q +Y   I +S   LLNL+NDILDL+ ++AG +++      +  L N ++Q      
Sbjct: 509 TDEQVKYARTIQSSGNDLLNLINDILDLSKIEAGHVEIQPEEASVVRLTNGLRQMFEPVA 568

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            E  +   +  D  L  +F  D +RL QI   ++SNA+ F+ KG   +    + +   +F
Sbjct: 569 SEKQLEFIISLDEHLPKTFETDPRRLEQILKNLISNAIKFTEKGKVELSVRPQGSDKIVF 628

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SV ++G  I ED   S+F  F        RR  G GLGLSI    + L  G +++ S   
Sbjct: 629 SVADSGIGIAEDQLNSIFEAFHQADSTISRRFGGTGLGLSISRQLVRLLAGTIAVESKPG 688

Query: 780 GVTTINCRIPSKE 792
             +  +  +P ++
Sbjct: 689 QGSRFSVTLPLRQ 701


>gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 916

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 125/228 (54%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+L   + +Q  Y+  I  S+
Sbjct: 274 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL---SPRQQDYLATIEKSA 329

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LL ++N++LD + ++AG + L      L DLL +    +A   HE  +  I +I    
Sbjct: 330 DSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELISLIYRDT 389

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIP 731
             +   D  RL Q+ + ++SNA+ F+ +G T++++A     + D+     SV + G  + 
Sbjct: 390 PLALRGDPLRLKQVLTNLVSNAIKFTREG-TIVMRAMVEDESVDSAQLRISVMDTGIGLS 448

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           ++  +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 DEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDST 496


>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1526

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 10/226 (4%)

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +SF+  +S+E+R+P+  ++G T LL  +    LN++Q  +VE I  S   LL L+NDILD
Sbjct: 850  SSFLATMSHEIRTPMNAVLGMTGLLLET---PLNAEQRDFVETIRISGDALLTLINDILD 906

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
             + ++AG M+L      L   L EV    A   H   + + V+   ++  ++  D  RL 
Sbjct: 907  FSKLEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRLR 966

Query: 689  QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            QI + ++SNA+ F+ +G  VI    L+    +     SV++ G  IP      +F  F  
Sbjct: 967  QILNNLVSNAIKFTHQGEVVIQAEVLQETATHAHLKLSVRDTGIGIPAAAQSKLFQPFSQ 1026

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  R+  G GLGL+I +    L GG +S+ S +   +T +  +
Sbjct: 1027 VDASTTRKYGGTGLGLAICKQLTELMGGTISLQSQEGQGSTFSVEL 1072


>gi|75911124|ref|YP_325420.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704849|gb|ABA24525.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 889

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 128/259 (49%), Gaps = 14/259 (5%)

Query: 542 FVNVTDSVRAE--------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           F N+T+  +AE        R    ++EA  +A+ +K+ F+  +S+ELR+PL  I+G+  L
Sbjct: 477 FRNITERKQAEQEREYLLMREQIARSEA-ERANRLKDDFLAVLSHELRTPLNPILGWATL 535

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK   L     ++   +E I  ++ + + L+ D+LD++ +  G + LN  ++ L + + E
Sbjct: 536 LKKRNLEEATRRRG--IETIERNAKLQIQLIEDLLDVSRIQQGKLNLNIQSVNLVNTIEE 593

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             ++++  +   NI +K   +  +     D  RL QI   +L+NA+ F+     + +   
Sbjct: 594 ALETVSLAIEAKNIDVKTALNVNVCMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVALE 653

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           R N      +++NG  I  +    VF  F         Q  G+GLGL+IV+    LHGG 
Sbjct: 654 RVNNSAQIQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGT 713

Query: 772 VSISSSDEGV-TTINCRIP 789
           V   S+ EG+  T    +P
Sbjct: 714 VKAESAGEGMGATFTVNLP 732


>gi|121997145|ref|YP_001001932.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588550|gb|ABM61130.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 657

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 127/241 (52%), Gaps = 8/241 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  +A  +AD  + +F+  VS++LR+PL  ++GFT LL+ ++   L+++Q +YVE    +
Sbjct: 269 ELEQARAQADRDRTTFLAAVSHDLRTPLNAVVGFTGLLQDTE---LDAEQRRYVELCRTA 325

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LL LV+ +L L+ ++AG M+L  +   L   L +    +     E  + + +  D  
Sbjct: 326 SQTLLGLVDTLLSLSRLEAGEMQLECAPFDLRAFLEDEVGLLEALAAEKGLSLSLHIDPA 385

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
           +  +V  D  R  Q+   + +NA+ F+ +GS VI ++ A  +G    +V++ G  I E  
Sbjct: 386 VPGWVEGDAVRFGQVLYNLANNAIKFTEQGSVVITVEPADGDGLLRVAVRDTGPGISEAD 445

Query: 735 CKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRIPSK 791
            K +F  F       +R+ G GLGL+I +  + L GG + + S+    +T     R+P+ 
Sbjct: 446 QKRIFRAFTQGGDVFRRQEGSGLGLTICKELVRLMGGDLGLKSAPGAGSTFQFTARLPAV 505

Query: 792 E 792
           E
Sbjct: 506 E 506


>gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1141

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 152/326 (46%), Gaps = 43/326 (13%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT- 541
           A+   R     DG +++  I  S   D R    G   +++D      I PL  AQ  L  
Sbjct: 297 ASQYERRLARKDGSEVWTMISASPQFDARGEFNGVFAMITD------ITPLRIAQANLKT 350

Query: 542 --------FVNVTDSV---------------RAERALTEKNEALRKADEIKNSFVQHVSY 578
                    V  TD +               + E+ + +  EA  KA   K+ F+ ++S+
Sbjct: 351 AYDELEKRVVERTDELNKTNRLLTSEIHIRKQTEKEIIKAKEAAEKATLAKSEFLANMSH 410

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  IIG T L+K ++   L++ Q  Y+  I  S+  LL ++ND+LDL+ ++AG++
Sbjct: 411 EIRTPMNAIIGMTHLIKMTE---LSATQRDYLNKIDISAKSLLGIINDVLDLSKIEAGML 467

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK--LGSFVADRQRLLQIFSKILS 696
            +      L  +L ++   ++ + +E  +   +IS GK    +   D  R+ QI   + +
Sbjct: 468 TVESVGFKLEQVLEQLTTIVSPRANEKKLEF-LISVGKDVPPAIQGDPMRMAQILINLCN 526

Query: 697 NAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           NA+ F+ +GS V+    L+   D     F+VK++G  I     + +F  F        R+
Sbjct: 527 NAVKFTDEGSVVVGISTLEKDADKARLRFTVKDDGIGIKPGKIQELFQPFTQADASTTRK 586

Query: 753 --GVGLGLSIVESFINLHGGHVSISS 776
             G GLGLS+ +  ++L GG +   S
Sbjct: 587 YGGTGLGLSLCKQLVDLMGGEIGAES 612


>gi|115523991|ref|YP_780902.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
 gi|115517938|gb|ABJ05922.1| signal transduction histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 545

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 11/234 (4%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G+     + 
Sbjct: 255 EQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVAV 312

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y +Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ +    +  +    
Sbjct: 313 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRASNR 372

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724
            I I  + +  +    AD +   QI   +LSN++ F+ +G  + LK     +G    SVK
Sbjct: 373 GITIHEVFEQGMPRIWADERAARQIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVK 432

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + GS I ED    V   F   SN+ +   +G GLGL I +S I++HGG  ++ S
Sbjct: 433 DTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 486


>gi|119489826|ref|ZP_01622581.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119454254|gb|EAW35405.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1666

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 22/253 (8%)

Query: 544  NVTDSVRAERALTE-KNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            ++ + V+A  A  E  N+AL++       A+  K+ F+  +S+ELR+PL  I+G+T +L+
Sbjct: 1161 HLEERVKARTAALELTNQALKQSKANADAANLAKSKFLAQMSHELRTPLNGILGYTQILQ 1220

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +  +L  +Q Q +E I      LL+L+NDILDLA ++A  M L  +T+ L   L+E+ 
Sbjct: 1221 RDQ--TLTEQQQQSLEIIYKCGNHLLDLINDILDLAKIEAQKMDLYPNTLKLKAFLDEIA 1278

Query: 656  QSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTV----I 709
              I  +     +     +D +L +   + D +RL QI   +LSNA+ F+  G  +    +
Sbjct: 1279 VIIHPRATGKGLTWTYFTDPQLSNLFCLVDSKRLRQILLNLLSNAVKFTDTGEVILEVEV 1338

Query: 710  LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESF 764
            +    ++  ++   F VK+ G  IP +  +S+F  F   + A++ Q  G GLGL+I +  
Sbjct: 1339 ISPFTNSNPYVTLRFKVKDTGIGIPSEKIESLFQPFEQGTEAYK-QSEGTGLGLTITQKL 1397

Query: 765  INLHGGHVSISSS 777
            + + G  + + S 
Sbjct: 1398 LEMMGAKLEVESQ 1410


>gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1172

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 137/265 (51%), Gaps = 14/265 (5%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L  ++VT+  RA        E    A+  K+ F+  +S+E+R+P+  I+GF ++L   
Sbjct: 400 VLLNAIDVTELSRARIEAERAKEQAESANRAKSDFLAVMSHEIRTPMNGILGFAEILLNQ 459

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L+S+Q + V+ IS     LL+L+N+ILDL+ +++G M L  +   L +++ +V  +
Sbjct: 460 ---ALSSEQKESVQAISLCGEQLLDLINEILDLSKIESGKMVLEETDFSLENIIKDVITT 516

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
           +  K  +  + I+V   D     F+ D  R+ QI S +L NA+ F+ +GS +I  + R  
Sbjct: 517 VRQKAQDKGLEIRVNFLDDIPQRFIGDSIRIRQILSNLLFNAVKFTMQGSVIISVSKRQE 576

Query: 716 ---NGDFIF----SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                D IF     V + G  I +D  + +F+ F        ++  G GLGL+I  S ++
Sbjct: 577 ECHERDDIFPLQIEVADTGIGISQDKRELIFDAFTQAEGVIAQKFGGSGLGLTICRSLLD 636

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           L GG + ++S+    T     +P K
Sbjct: 637 LMGGEIWVNSNKPQGTIFTFCLPVK 661


>gi|218232960|ref|YP_002366695.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218160917|gb|ACK60909.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 458

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 237 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 294

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 295 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 352

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 353 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 412

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 413 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 457


>gi|34558037|ref|NP_907852.1| sensor/response regulator hybrid [Wolinella succinogenes DSM 1740]
 gi|34483755|emb|CAE10752.1| SENSOR/RESPONSE REGULATOR HYBRID [Wolinella succinogenes]
          Length = 1263

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 11/232 (4%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L +  E    A+  K+ F+ ++S+E+R+PL +I+GF ++L+ S LG    K+ +Y E I 
Sbjct: 785  LLKAKELAESANRAKSEFLSNMSHEIRTPLNSILGFAEILQHSSLGI---KEQRYAENIL 841

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  +L++++NDILDL+ V+AG M +    + L  L+ EV      K  E N+ + ++ D
Sbjct: 842  KSGKVLMDIINDILDLSRVEAGKMLIQKHPVELEALVREVYGLFLMKAKEKNLDLDLVID 901

Query: 675  GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGS 728
             +L    V D  R+ QI   ++ NA+ F+ KG   I      + +    + +  +K++G 
Sbjct: 902  ERLPKILVIDGTRVRQILFNLVGNAIKFTHKGYVRISVERGERESEGGIELVLRIKDSGI 961

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             I +     +F  F   + +  R   G GLGL+I +    L  G +S+ S +
Sbjct: 962  GIAQADSNKIFEAFEQQSGQDNRLYGGTGLGLAICQRLARLMDGEISLVSQE 1013


>gi|297619344|ref|YP_003707449.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
 gi|297378321|gb|ADI36476.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
          Length = 654

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 133/239 (55%), Gaps = 4/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L++  + L++ D +K+  +   S+ELR+PLT++ G+ +L+    +G +N  QS+ +  
Sbjct: 393 QELSKSYDELKELDNLKSDLIAIASHELRTPLTSVKGYVELVLDGTMGEVNEAQSKCLSI 452

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            + +   L  L++ +LDL+ ++ G +++    + +   ++EV +++     E NIR+  +
Sbjct: 453 ANDNIDRLRRLIDSMLDLSKIERGELQMQKELMNMKVAVDEVFENLKPLFDEKNIRL--V 510

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +  S   D+ RL+Q+ + ++ NA+ F+     + L A  D G+    V+++G+ IPE
Sbjct: 511 KDVQNLSLYGDKDRLMQVITNLVENAIKFNPTNGEIYLGAYEDEGNIHLIVQDHGAGIPE 570

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F+RF  V ++ +  + G GLGL++ +S +  H G + + S     +T +  +P
Sbjct: 571 KDLEKIFDRFYQVDSSSKRPKGGSGLGLAVCKSIVEAHEGIIWVESELGKGSTFHVILP 629


>gi|328469859|gb|EGF40770.1| putative two-component sensor [Vibrio parahaemolyticus 10329]
          Length = 632

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 145/284 (51%), Gaps = 24/284 (8%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM----------LTFVNVTDSVRAERALTEKNEALR 563
           L   L+LLS +V ++S    P+  T+          L       SV+  R    + EA R
Sbjct: 175 LVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEAER 234

Query: 564 KADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              E+    K+ F+  +S+E+R+P+  IIG   LL  +KL   + +Q ++VE I  SS  
Sbjct: 235 DKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL---DPQQKEFVEIIDNSSQS 291

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ +++DILD + V+AG ++L   T     LL++V      K  + N+++    D KL +
Sbjct: 292 LMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPA 351

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDM 734
            V  D  RL Q+ + +LSNA+ F+ +G   +L +  +  + I    F V ++G  I ++ 
Sbjct: 352 EVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEH 411

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            ++VF RF        R+  G GLGL+I    +++ GG + ++S
Sbjct: 412 QQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455


>gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus
           MO6-24/O]
 gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus
           MO6-24/O]
          Length = 928

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D ++    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A + D+ D  F VK+ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSLDLQFMVKDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|296502595|ref|YP_003664295.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296323647|gb|ADH06575.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 452

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 231 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 288

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 289 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 346

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 347 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 406

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 407 YQINNHAA---GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 451


>gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 1092

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 130/242 (53%), Gaps = 13/242 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  ++EA   AD  K+ F+ ++S+E+R+P+  ++G  +LL  +    L+++Q  +++ I 
Sbjct: 538 LLARSEA---ADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---DLDARQKTFIDIIV 591

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD + +DAG M+L  +     + + +V   +++   E +I + V + 
Sbjct: 592 KSGNALLTIINDILDFSKIDAGQMRLRKAAFDPAEAVEDVATLLSSPAAEKDIELLVRAT 651

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFS--VKNNGSS 729
             + + V  D  R  QI + +L NA+ F+ +G  ++   ++  DNG+ + +  V++ G  
Sbjct: 652 PAVPAMVLGDAGRFRQIVTNLLGNAIKFTERGHVLVEVDSQPIDNGEVMLTLRVEDTGLG 711

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++   S+F +F        RR  G GLGL+I    ++L GG++ + S     +T    
Sbjct: 712 ISKEKLDSIFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLEVDSEWGKGSTFTVH 771

Query: 788 IP 789
           +P
Sbjct: 772 LP 773


>gi|218441977|ref|YP_002380306.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174705|gb|ACK73438.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1058

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E    A++ K+ F+ ++S+ELR+PL  I+GF+ L+  S   +L  +  + ++ I+
Sbjct: 588 LAEAKEKAEVANQAKSRFIANMSHELRTPLNAILGFSQLMNRST--TLPPEHQENIQIIN 645

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+N+IL LA ++AG   LN S   L  LLNE+++       + N+ +    D
Sbjct: 646 RSGEYLLTLINNILTLAKIEAGKTSLNLSNFDLYSLLNEIEEIFYLAAKKKNLNLTFERD 705

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIP 731
             +  ++  D  +L ++   +LSNA+ F+ +G  +  +   ++     +F+VK+ G  I 
Sbjct: 706 KTIPQYIRTDEVKLREVLINLLSNAIKFTPRGDILVDVQTLSQKPITLLFTVKDTGVGIT 765

Query: 732 EDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +    +F+ F  + + +  + G GLGL+I   F+ L GG +++ S
Sbjct: 766 PEELDILFDAFSQTQSGKNSQEGTGLGLAISRQFVELMGGELTVDS 811


>gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016]
 gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 928

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D ++    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A + D+ D  F VK+ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSLDLQFMVKDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|28899864|ref|NP_799519.1| putative two-component sensor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260880452|ref|ZP_05892807.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|28808147|dbj|BAC61352.1| putative two-component sensor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308092209|gb|EFO41904.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
          Length = 632

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 145/284 (51%), Gaps = 24/284 (8%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM----------LTFVNVTDSVRAERALTEKNEALR 563
           L   L+LLS +V ++S    P+  T+          L       SV+  R    + EA R
Sbjct: 175 LVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEAER 234

Query: 564 KADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              E+    K+ F+  +S+E+R+P+  IIG   LL  +KL   + +Q ++VE I  SS  
Sbjct: 235 DKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL---DPQQKEFVEIIDNSSQS 291

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ +++DILD + V+AG ++L   T     LL++V      K  + N+++    D KL +
Sbjct: 292 LMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPA 351

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDM 734
            V  D  RL Q+ + +LSNA+ F+ +G   +L +  +  + I    F V ++G  I ++ 
Sbjct: 352 EVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEH 411

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            ++VF RF        R+  G GLGL+I    +++ GG + ++S
Sbjct: 412 QQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455


>gi|227538847|ref|ZP_03968896.1| possible sensor histidine kinase/response regulator
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241356|gb|EEI91371.1| possible sensor histidine kinase/response regulator
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 586

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 131/245 (53%), Gaps = 9/245 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +++ L    +    A + K+ F+  +S+E+R+PL  IIG  DLLKT+KL   +  Q   +
Sbjct: 199 SQKELIISKQLAEDATKAKSKFIMTMSHEIRTPLNGIIGTIDLLKTTKL---DQNQQLLI 255

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E + ASS IL +LV D+LD++ ++    ++NY++  L+  L  +K  I   +   ++ + 
Sbjct: 256 ENLQASSHILSDLVTDLLDISRIETNKFEVNYTSFDLHQSLISLKHVIDPMLKSKDLTLN 315

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF--SVKNN 726
           + +++      + D  R  QI   +LSNA+ F+ KGS T+ +     +  ++    VK+ 
Sbjct: 316 IRMAENTPAELITDEARFKQILLNLLSNAIKFTLKGSITLYISYILLHDKYVLECKVKDT 375

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F++F  +        +G+GLGL+I +  +++ GGH+ + S     TT 
Sbjct: 376 GIGIKKENISRLFDQFSQIEEPQIPDNKGIGLGLAICQRLLHILGGHIEVESVYGIGTTF 435

Query: 785 NCRIP 789
             R+P
Sbjct: 436 TFRLP 440


>gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
 gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
          Length = 918

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q+ YVE I++S
Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
            + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D G
Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731
                  D  RL Q+   +LSNA+ F+++G   +    R D G     ++SV ++G  I 
Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGIS 572

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +P
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|301307858|ref|ZP_07213814.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300834201|gb|EFK64815.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 767

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N T   +  + L E  E    +D +K++F+ ++S+E+R+PL  I+GF++L+ T      
Sbjct: 524 INNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVTC---DD 580

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y+  I +++ +LL L+NDILDL+ +++GI++       L  + NE+  +I  KM
Sbjct: 581 PEEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKM 640

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              N+ +++         + DR RL Q++   L+NA+  +  G   +       G  I+ 
Sbjct: 641 TNPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSGYIKMGYGIERKGLRIY- 699

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IP+D+   VF RF       Q  G GLGL+I  + +   GG V  +S
Sbjct: 700 VEDTGIGIPDDLHDKVFTRFEKLNEFSQ--GTGLGLTISRAIVEAAGGEVGFTS 751


>gi|255263227|ref|ZP_05342569.1| sensory box histidine kinase/response regulator [Thalassiobium sp.
           R2A62]
 gi|255105562|gb|EET48236.1| sensory box histidine kinase/response regulator [Thalassiobium sp.
           R2A62]
          Length = 835

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 12/226 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +++AL   +++K  F+  +S+E+R+PL  ++G   LL+ + L   ++ Q +YV Y+  S 
Sbjct: 344 RDKAL-AGEKLKTDFLATMSHEIRTPLNGLLGNMSLLRDTHL---DTAQDRYVGYMETSG 399

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDG 675
            +L+N ++D+LD+   DAG +      + ++ LL ++   QS A   HE ++  K +S+ 
Sbjct: 400 RLLMNHISDVLDITRYDAGKLDTRLGPVNISALLQDIVDNQSSAASKHETSLTWKWLSE- 458

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIPE 732
           +    ++D  RL  +   ++ NA+ F+ +G    TV      DN      +K+ G  + E
Sbjct: 459 ETSWILSDHDRLQHVMINLIGNAVKFTKRGRVDITVEEIKEHDNPTLQIQIKDTGPGMTE 518

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           D+ KSVF+ FV+      R   G GLGLSI + F+N  GG + + S
Sbjct: 519 DLVKSVFDDFVTGDTSYHRDVSGTGLGLSIAKRFVNALGGDIRVES 564


>gi|253568043|ref|ZP_04845454.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
 gi|251842116|gb|EES70196.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
          Length = 939

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 131/248 (52%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + +R L    E    +D++K++F+ ++S+E+R+PL  I+GF+ L+  S+     
Sbjct: 513 DITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESE---NK 569

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  + E + A++  LL L+N+ILDL+ +++GI++   + I +N L  EV  +   +  
Sbjct: 570 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 629

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    +++I +      V   D+ R+ Q+FS ++ NA  F+  GS         N   +F
Sbjct: 630 QG---VQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGN-QIVF 685

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V + G+ I  +    VF RF    +  Q  G GLGLSI ++ +   GG +S+SS     
Sbjct: 686 HVTDTGTGIEPEKIGRVFERFAKLNNYAQ--GTGLGLSICKTIVERLGGEISVSSVVGQG 743

Query: 782 TTINCRIP 789
           TT    +P
Sbjct: 744 TTFTFTLP 751


>gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2]
          Length = 918

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q+ YVE I++S
Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
            + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D G
Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731
                  D  RL Q+   +LSNA+ F+++G   +    R D G     ++SV ++G  I 
Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +P
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTQFSVDLP 632


>gi|255008569|ref|ZP_05280695.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313146297|ref|ZP_07808490.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313135064|gb|EFR52424.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 639

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 9/236 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R++  L E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L +   GS    Q
Sbjct: 399 DLERSQADLYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GSSEEDQ 456

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S+     E+ 
Sbjct: 457 RNYFRIIQSNSDLLLRLINDILDLSRLEADKVTLTPEDCDVVQLCRQALSSVEMSRRESG 516

Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723
            R   + + +  SFV   D QRL Q+   +L+NA  F+  G+ T+  +  ++    +F+V
Sbjct: 517 NRF--VFETQTESFVLQVDIQRLQQVLINLLTNAAKFTKNGTITLQFEVEKEKNRVLFAV 574

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I    E
Sbjct: 575 ADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGSIWIDPDYE 628


>gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured
           bacterium]
          Length = 962

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 15/255 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   + EK   L  + + K+ F+ ++S+ELR+PL +++  + LL  +K  +L  KQ +Y
Sbjct: 262 QARELVEEKANELELSSKYKSEFLSNMSHELRTPLNSLLILSRLLYENKDENLTDKQIEY 321

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              + A+ T LL L+N++LDL+ ++AG M LN   + L    + V+Q       E  + +
Sbjct: 322 SRTVHAAGTELLELINEVLDLSKIEAGRMVLNIEEMNLKGFTSYVEQHFLHIAEEKGLYL 381

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717
            + +++    S   DRQR+ QI   +LSNAM F++ G   I       G           
Sbjct: 382 HIALAEDVPSSLYTDRQRVEQIVKNLLSNAMKFTTSGGITIQIDRPTAGIDLSRSTLNPQ 441

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                SV + G  IPE+  + +F  F        R+  G GLGLSI      L GG + +
Sbjct: 442 HAVAISVSDTGVGIPEEKQRVIFEAFQQADGTTSRKYGGTGLGLSITRELAKLLGGEIQL 501

Query: 775 SSSDEGVTTINCRIP 789
            S +   +T    +P
Sbjct: 502 RSEEGKGSTFTLYLP 516


>gi|34497036|ref|NP_901251.1| sensor/response hybrid [Chromobacterium violaceum ATCC 12472]
 gi|34330322|gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC
           12472]
          Length = 664

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LTE  +A   A+  K+ F+  +S+E+R+PL  +IG TDLL+ ++   L+ +Q  YV  + 
Sbjct: 15  LTEARDAAEAANRAKSEFLAVMSHEIRTPLNGVIGMTDLLQRTR---LDDRQRHYVSVVH 71

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL +++DILD + ++AG  +L+     LN L+ E+ + +A   +   + +     
Sbjct: 72  RSGEDLLAIISDILDFSKIEAGKFELDRQPFCLNLLVEEIVERLAPVAYGKGLELMCALP 131

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSI 730
                 V D +RL Q+ + ++ NA+ F+  G  +  + +A   +       SVK+ G  I
Sbjct: 132 LMPVEVVGDGKRLGQVLTNLVGNAIKFTESGHVLAKVDRAGESDAGVTCRISVKDTGIGI 191

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             D  K +F  F        RR  G GLGL I +  + + GG + + S
Sbjct: 192 APDQQKRLFKPFSQADSSTTRRFGGTGLGLVISQRLVGMMGGRIELES 239


>gi|15614144|ref|NP_242447.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174198|dbj|BAB05300.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 594

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 10/250 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V  +V   R +TE+    R+ D+++  F+ +VS+ELR+P++ + G+++ +     G+ + 
Sbjct: 346 VRGAVAVIRDMTEE----RRHDKLRKDFIANVSHELRTPISMLQGYSEAIIDDIAGT-DQ 400

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +  + I   S  +  LVN++LDLA ++AG + L+Y  I +      + +       E
Sbjct: 401 EKKELAKIIYDESLRMGRLVNELLDLARMEAGHIDLSYEEIEVKTFCERITRKFQGLAKE 460

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFS 722
             + +  I  G  G  +  D  RL Q+ + +LSNA+  +  G TV L     +NG  I  
Sbjct: 461 QQLTLDFIYRGDEGKRIQVDPDRLEQVLTNLLSNAIRHTDPGGTVQLACHVMENGVKI-D 519

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G+ IPE+    VF RF     A    R G GLGL+IV++ ++ H G +S+ S  + 
Sbjct: 520 VTDTGTGIPEEDLPYVFERFYKADKARTRGRSGTGLGLAIVKNIVDAHSGEISVHSKQQE 579

Query: 781 VTTINCRIPS 790
            TT     P+
Sbjct: 580 GTTFTAFFPN 589


>gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
 gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
          Length = 918

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q+ YVE I++S
Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
            + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D G
Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731
                  D  RL Q+   +LSNA+ F+++G   +    R D G     ++SV ++G  I 
Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGIS 572

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +P
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|116051482|ref|YP_789685.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 918

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q+ YVE I++S
Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
            + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D G
Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731
                  D  RL Q+   +LSNA+ F+++G   +    R D G     ++SV ++G  I 
Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +P
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|330950455|gb|EGH50715.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 1350

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+ +     L     +   A+  K+ F+ ++S+E+R+P+  +IG + LL  +   +LN
Sbjct: 614 DITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNT---ALN 670

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q Q +  +  +   LL ++NDILD+A ++AG M+L ++      LL+E+ +    +  
Sbjct: 671 DQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQ 730

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718
           E  +R  V     L G  + D  R+ QI   ++ NA+ F++ G   V +    D+ D   
Sbjct: 731 EKGLRFSVSVVASLPGQLIGDALRVNQILMNLVGNALKFTTVGGVDVTVSREDDHADTCW 790

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV++ G  IP +    +F  F        RR  G GLGLS+V       GG + + S
Sbjct: 791 LRFSVQDTGCGIPANALGQLFAPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVES 850


>gi|153869726|ref|ZP_01999262.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073807|gb|EDN70737.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 549

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 120/215 (55%), Gaps = 7/215 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+ELR+PL  I+G+T +L   K   L  KQ + ++ I  S   LL L+
Sbjct: 65  ANKAKSEFLANMSHELRTPLNGILGYTQILNHDK--RLTDKQKEGIQIIHRSGEHLLILI 122

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILDL+ ++AG ++++     L   L ++   +  +  + +I +   +   L   V  D
Sbjct: 123 NDILDLSKIEAGKLEMSPIDFGLPIFLQDIVDLMKMRAEQKSIELMYETLYPLPMGVRTD 182

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           ++RL Q+   +LSNA+ F+ KG  V  K   DNG   F V++ G  +P D  +S+F  F 
Sbjct: 183 KKRLRQVLLNLLSNAIKFTDKGH-VNFKVIYDNGRARFEVEDTGCGVPADQLESIFLPFQ 241

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + + H+ Q  G GLGL+I +  + + GG + + +
Sbjct: 242 QMGDQHQ-QLEGTGLGLAISKQLVTMMGGQLHVET 275


>gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 918

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q+ YVE I++S
Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
            + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D G
Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731
                  D  RL Q+   +LSNA+ F+++G   +    R D G     ++SV ++G  I 
Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +P
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|329962495|ref|ZP_08300495.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328530051|gb|EGF56939.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 939

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 128/246 (52%), Gaps = 12/246 (4%)

Query: 535 NAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           N Q  L  VN  +T+    E  L E  E    AD +K++F+ ++S+E+R+PL  I+GF+ 
Sbjct: 687 NGQIELIGVNYDITELKETEAMLIEAKEKAEAADRLKSAFLANMSHEIRTPLNAIVGFSS 746

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  ++      ++ QY+  +  ++ +LL L++DILDL+ ++AG        + +N L  
Sbjct: 747 LLGETENV---EERKQYIAIVEENNDLLLQLISDILDLSKIEAGTFDFTKRALDVNLLCE 803

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++ +++  K+      ++++ D  L     V+DR RL Q+ +  ++NA+ F+S GS  + 
Sbjct: 804 DIVRTMRMKVKPG---VELLFDSHLPECQIVSDRNRLNQVLANFVNNAVKFTSAGSIRVG 860

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
               D     F V + G  I  +    VF+RFV         G GLGLSI +S I   GG
Sbjct: 861 YEPLDENRLRFYVADTGIGIEPEKQVQVFDRFVKLDTFVP--GTGLGLSISKSIIEQLGG 918

Query: 771 HVSISS 776
            + + S
Sbjct: 919 TIGVDS 924


>gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 918

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q+ YVE I++S
Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
            + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D G
Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731
                  D  RL Q+   +LSNA+ F+++G   +    R D G     ++SV ++G  I 
Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +P
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|298243600|ref|ZP_06967407.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297556654|gb|EFH90518.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1121

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 15/239 (6%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N A ++ ++ K+ F+   S+ELR+PLT +      ++T+ L    +KQ      +S+  T
Sbjct: 878  NSARKELEQRKDDFISMASHELRNPLTAL-----KMQTTLLHRQLAKQGIQAPALSSMKT 932

Query: 619  I---LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
                L+ LV ++LD++ + AG ++    T+ L+ LL E    IA  M + N    ++  G
Sbjct: 933  QINKLIRLVEELLDVSKIQAGRLEYRQETVDLDALLRE----IANTMQQTNPSHTIVMRG 988

Query: 676  KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +  S +ADR RL Q+F+ +LSNA+ +S    TV +  +         V+++G  IP + 
Sbjct: 989  AVQTSLLADRDRLGQVFTNLLSNAIKYSPGAETVEMDLSATEDAVTIRVRDHGLGIPREQ 1048

Query: 735  CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F RF   A   QR   G+G+GL IV   +  HGG +++ S     +T    +P +
Sbjct: 1049 RDKIFERFYRVAGSTQRAIPGLGMGLYIVAEIVKRHGGTITVESDVGNGSTFTVTLPKR 1107


>gi|228958287|ref|ZP_04120013.1| hypothetical protein bthur0005_17960 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801368|gb|EEM48259.1| hypothetical protein bthur0005_17960 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 443

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 442


>gi|167590631|ref|ZP_02383019.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 985

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 20/266 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++VT   R E  L E  EA   A+  K++F+  +S+E+R+PL  IIG  +L+  + 
Sbjct: 457 LCTLLDVTARKRTELKLREAREAAEDANRAKSTFLATMSHEIRTPLNAIIGNLELMARA- 515

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK--- 655
             SL   + + ++ I++SS  LL ++ND+LDL+  ++  M L      L DLL +V    
Sbjct: 516 --SLPPSERRRLKTIASSSDALLRVINDVLDLSKAESNQMALECIPFDLRDLLRDVAAIF 573

Query: 656 QSIATKMHEN-NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712
           + +A   H   + R+   ++DG LG    D  RL Q+ S ++ NA+ F+ +G   I  + 
Sbjct: 574 RPVADAKHLTLDCRMAADLADGYLG----DPTRLRQLVSNLVGNAIKFTKRGGVTIDARV 629

Query: 713 ARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           A D         +V++ G  IPED   ++F+ ++       RR  G GLGL +      L
Sbjct: 630 ATDAAGARRVAIAVRDTGIGIPEDALPNLFDVYMQADPSIYRRFGGTGLGLPLCGRIARL 689

Query: 768 HGGHVSISSS-DEGVTTINCRIPSKE 792
             G +++ S  DEG TT    +P  E
Sbjct: 690 MHGELTVESRVDEG-TTFVAALPLPE 714


>gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6]
 gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus
           CMCP6]
          Length = 928

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D ++    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIPEGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V ++A + D+ D  F VK+ G  I E    
Sbjct: 401 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSIDLQFMVKDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|256838767|ref|ZP_05544277.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739686|gb|EEU53010.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 657

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N T   +  + L E  E    +D +K++F+ ++S+E+R+PL  I+GF++L+ T      
Sbjct: 414 INNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVTC---DD 470

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y+  I +++ +LL L+NDILDL+ +++GI++       L  + NE+  +I  KM
Sbjct: 471 PEEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKM 530

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              N+ +++         + DR RL Q++   L+NA+  +  G   +       G  I+ 
Sbjct: 531 TNPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSGYIKMGYGIEREGLRIY- 589

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IP+D+   VF RF       Q  G GLGL+I  + +   GG V  +S
Sbjct: 590 VEDTGIGIPDDLHDKVFTRFEKLNEFSQ--GTGLGLTISRAIVEAAGGEVGFTS 641


>gi|29346408|ref|NP_809911.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568192|ref|ZP_04845603.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338304|gb|AAO76105.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842265|gb|EES70345.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 810

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 131/239 (54%), Gaps = 14/239 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E+ L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  ++     
Sbjct: 566 DITTLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETE----- 620

Query: 604 SKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           SK+    Y++ +  ++ +LL L++DILDLA ++AG     Y+ + +N++ +E+ +S   K
Sbjct: 621 SKEECQDYIKIVQDNNDLLLRLISDILDLAKIEAGTFNFVYADLDVNEVCSEIIKSTGMK 680

Query: 662 MHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  N   IK++ + ++       D+ R +Q+ +  ++NA+ F+ +G+  +      +   
Sbjct: 681 VKGN---IKLLFEKQIPECHIYTDKNRFMQVITNFINNALKFTHEGTIALGYEQISSQKI 737

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            F V++ G  IP     SVF RFV   +  Q  G GLGLSI +S I    G + + S++
Sbjct: 738 RFYVRDTGVGIPASKINSVFERFVKLNNFVQ--GTGLGLSICKSIITQMEGEIGVDSTE 794


>gi|27377710|ref|NP_769239.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
 gi|27350855|dbj|BAC47864.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
          Length = 2095

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 130/260 (50%), Gaps = 20/260 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L++KQ ++
Sbjct: 1404 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLTDNPDGNLSAKQVEF 1463

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  + T LLNL++DILDL+ +++G + ++   I+  +LL  V +    +    N+  
Sbjct: 1464 ARTIHGAGTDLLNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRNLSF 1523

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------- 719
            K+  D  L  S V D +RL Q+   +LSNA  F+++G  V LK     G +         
Sbjct: 1524 KIDVDPNLARSIVTDSKRLQQVLKNLLSNAFKFTAEGE-VRLKVGGALGGWGTDHPVLNS 1582

Query: 720  -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
                  F V + G  IP +  K +F  F   A  G  R   G GLGL+I     +L GG 
Sbjct: 1583 APAVISFEVSDTGIGIPLEKQKLIFEAF-QQADAGTSRKYGGTGLGLAISRELASLLGGE 1641

Query: 772  VSISSSDEGVTTINCRIPSK 791
            + + S+    ++    +P K
Sbjct: 1642 IHLRSAPGKGSSFTLYLPLK 1661


>gi|262382720|ref|ZP_06075857.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295598|gb|EEY83529.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 767

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N T   +  + L E  E    +D +K++F+ ++S+E+R+PL  I+GF++L+ T      
Sbjct: 524 INNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVTC---DD 580

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y+  I +++ +LL L+NDILDL+ +++GI++       L  + NE+  +I  KM
Sbjct: 581 PEEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKM 640

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              N+ +++         + DR RL Q++   L+NA+  +  G   +       G  I+ 
Sbjct: 641 TNPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSGYIKMGYGIEREGLRIY- 699

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IP+D+   VF RF       Q  G GLGL+I  + +   GG V  +S
Sbjct: 700 VEDTGIGIPDDLHDKVFTRFEKLNEFSQ--GTGLGLTISRAIVEAAGGEVGFTS 751


>gi|260900170|ref|ZP_05908565.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308110109|gb|EFO47649.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 632

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 145/284 (51%), Gaps = 24/284 (8%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM----------LTFVNVTDSVRAERALTEKNEALR 563
           L   L+LLS +V ++S    P+  T+          L       SV+  R    + EA R
Sbjct: 175 LVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEAER 234

Query: 564 KADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              E+    K+ F+  +S+E+R+P+  IIG   LL  +KL   + +Q ++VE I  SS  
Sbjct: 235 DKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL---DPQQKEFVEIIDNSSQS 291

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ +++DILD + V+AG ++L   T     LL++V      K  + N+++    D KL +
Sbjct: 292 LMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPA 351

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDM 734
            V  D  RL Q+ + +LSNA+ F+ +G   +L +  +  + I    F V ++G  I ++ 
Sbjct: 352 EVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEH 411

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            ++VF RF        R+  G GLGL+I    +++ GG + ++S
Sbjct: 412 QQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455


>gi|229144617|ref|ZP_04273019.1| hypothetical protein bcere0012_17770 [Bacillus cereus BDRD-ST24]
 gi|228638857|gb|EEK95285.1| hypothetical protein bcere0012_17770 [Bacillus cereus BDRD-ST24]
          Length = 443

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 442


>gi|237723244|ref|ZP_04553725.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447766|gb|EEO53557.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 621

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+ LL+ +      
Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEA---EDA 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y   I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ QS+  +  
Sbjct: 438 EEKHLYATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRAT 497

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           E  + I +  +    +F +D+ RL Q+    ++NA+ F+S+GS VI    R NG+ + FS
Sbjct: 498 E-QVEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGSIVI--DYRINGNEVRFS 554

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V++ G  I  +  +++F RFV         G GLGL I +S +   GG + + S
Sbjct: 555 VQDTGMGIEPEKQEAIFTRFVK--LNNFIAGTGLGLPICQSIVTQLGGKIGVES 606


>gi|158339377|ref|YP_001520554.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158309618|gb|ABW31235.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 904

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 130/267 (48%), Gaps = 30/267 (11%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L E   A   A++ K+ F+ ++S+ELR+PL  I+GF+ LL  S+  +L  +Q Q +  
Sbjct: 389 KDLREAKNAAETANQAKSVFLANMSHELRTPLNAILGFSQLL--SRDQNLTLEQKQTLRT 446

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I++S   LLNL+ND+L+++ ++AG + LN     L  LL  + +  + K     +R+   
Sbjct: 447 INSSGAHLLNLINDVLEMSKIEAGKVDLNQGQFDLRALLESLFEMFSLKAEARQLRLDFE 506

Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS------------------------- 706
               L  + V+D  RL Q+   +L NA+ F+  GS                         
Sbjct: 507 LPPDLPQYIVSDASRLRQVLINVLGNAIKFTEVGSVTLAISTLPLQSVSEQLSDISSENE 566

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESF 764
            + L+   +N   +  +V + G  I +D   ++FN F  + A R    G GLGL+I   F
Sbjct: 567 AITLEPTLENDTLLQITVTDTGVGIADDELPNLFNLFTQACAGRQSFEGTGLGLAISRQF 626

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + L  G + +SS +   T +  +IP K
Sbjct: 627 VQLMQGDIHLSSKEGQGTKVQIQIPVK 653


>gi|153873278|ref|ZP_02001912.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070256|gb|EDN68088.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 617

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 147/279 (52%), Gaps = 15/279 (5%)

Query: 508 DDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AERALTEKNEAL 562
           D E+K  + T ELL + ++LE  +        +LT  N+ +  +    A+R   E+++ +
Sbjct: 54  DLEQKVKERTAELLEARNILEQRV--EERTAELLTAKNLAEQAQKMADADRVKAEQSQKI 111

Query: 563 -RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTIL 620
             +A+  K+ F+ ++S+ELR+PL  IIG++++L+      LN +     ++ I  +   L
Sbjct: 112 AEEANYAKSHFLANMSHELRTPLNAIIGYSEMLQEDA-EDLNQESCVLDLKKIQGAGKHL 170

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+N +LDL+ ++AG M+L   T  LN +LNE+  +I   + +    +K + D  LG  
Sbjct: 171 LGLINTVLDLSKIEAGRMELYIETFELNPVLNEIVSTIQPLVEKKANVLKTVFDDNLGQM 230

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D  +L Q+   +LSN   F+ +G   I    R +G++I F + +NG  + E+  K +F
Sbjct: 231 HTDLTKLRQMLLNLLSNTAKFTEQGQ--IRMEVRRDGEWINFCIADNGIGMTEEQQKKIF 288

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F        RR  G GLGL+I + F  + GG + + S
Sbjct: 289 QPFTQADASTTRRYGGTGLGLAITKQFSEMMGGVIWVES 327


>gi|37675668|ref|NP_936064.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200207|dbj|BAC96034.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 646

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E    A+  K+ F+  +S+E+R+P+  IIG   LLK      L+S+Q QYVE I+
Sbjct: 231 LKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEM---DLSSEQKQYVEMIN 287

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            SS  LL+++NDILD + ++AG M ++     L+DL+ ++      K H  N++  V ++
Sbjct: 288 HSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAHAKNLQFVVELA 347

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSS 729
           +    +   D + L Q+ + +L NA+ F+ +G   ++ A   +   I    F V ++G  
Sbjct: 348 EDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVVAKELDAQHIPHIRFQVFDSGIG 407

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I ++  + VF RF        R+  G GLGL+I    ++L GG + + S
Sbjct: 408 IAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELKS 456


>gi|330501197|ref|YP_004378066.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328915483|gb|AEB56314.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 749

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 9/227 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQ-SQY 609
           R +  + EA+R  DE+    V  VS++LR+P+T I     +++   S  G   S++ +  
Sbjct: 509 RQVLREQEAVRARDEL----VAVVSHDLRNPMTVISMLCSMMQKTFSSDGPHTSRRIATA 564

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++  +  L+ D+LD + +DAG   +    + +  +  E +  +A    + +I I
Sbjct: 565 LDTMQQAAGRMNTLLEDLLDTSKIDAGRYTITPQKLDVGHMFEEAQSLLAPLALDKDISI 624

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D  L    AD +RL Q+ S ++ NA+ F+ +  TV ++A    GD +FSV+++G  
Sbjct: 625 SFEADPDL-RIHADPERLFQVLSNLIGNAIKFTPRRGTVGVRAKSVGGDIVFSVRDSGEG 683

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPE+    VF+R+ + A  G   G GLGL I +  +  HGGH+ + S
Sbjct: 684 IPEEHLPHVFDRYWT-AKDGNPTGTGLGLYITQGIVEAHGGHIVVES 729


>gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
 gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
          Length = 1127

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +  KN+ L  AD++K+ F+   S+ELR+PL  ++G  + L T   G +++     +E I 
Sbjct: 440 IQHKNQELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPISASHRHQLEIII 499

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLVND+LD   +  G + +N     L+   + V +     +    IRI    D
Sbjct: 500 NSGQRLTNLVNDLLDYHKMRHGNLDINRHVADLSSATSLVLELSHHLLGNKPIRIINQVD 559

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
             L S  AD QRL Q+   ++ NA+ ++S+G  VI  +  D   F+   V + G  IP D
Sbjct: 560 KSLPSVYADEQRLEQVLYNLIGNAIKYTSEGKIVISASVVDQ--FLRVQVVDTGHGIPAD 617

Query: 734 MCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F   +   H     R+G GLGLSI    I L GG + +SS      T +  +P
Sbjct: 618 ELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 675


>gi|90423567|ref|YP_531937.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90105581|gb|ABD87618.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 533

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 11/234 (4%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G+     + 
Sbjct: 244 EQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGA--HAVAV 301

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y +Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ +    +  +    
Sbjct: 302 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRASSR 361

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVK 724
            I I  + +  +     D +   QI   +LSNA+ F+ +G  + LK     +G    SVK
Sbjct: 362 GITIHEVFEQGMPRIWGDERAARQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLSVK 421

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + GS I ED    V   F   SN+ +   +G GLGL I +S I++HGG  ++ S
Sbjct: 422 DTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 475


>gi|307153191|ref|YP_003888575.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306983419|gb|ADN15300.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1560

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 161/336 (47%), Gaps = 38/336 (11%)

Query: 484  AATCSRYYNESDG-WDLFAAIIT--SFDDER--KSLQG------TLELLSDSVLEYSIIP 532
              T      +SDG + L AA IT    DD++   SLQ       +L L +  V  +  I 
Sbjct: 1227 GTTVQELEGKSDGDFHLVAAEITLAGTDDQQVMNSLQSLLIPEQSLTLANGEVRYFQTIK 1286

Query: 533  LP------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSP 583
             P      NA  +L     TD    ++   E  +AL K  E+   K+ F+  VS+E R+P
Sbjct: 1287 TPLVSPDGNAHYILGVA--TDITERKQIQQEIEKALAKEKELHKLKSQFIDIVSHEFRTP 1344

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            LT+I+G+ +LL+         K+ +++  I  +   L +L+ D+L ++  ++G  KL Y+
Sbjct: 1345 LTSILGYAELLERHSDKLTTEKKIKHLHNIQMAGQRLSDLIQDVLCISRAESG--KLLYN 1402

Query: 644  TIVLN------DLLNEVK----QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
              ++N      DL+ E++    Q       + N+R    +D        D + L  I + 
Sbjct: 1403 PTLINVADFCQDLIEEIQIGIGQGYEILFKQPNLRPHSSTD----LIYLDEKLLRHILTN 1458

Query: 694  ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            +LSN + +S  GS V L    +N   IF +++ G  IP +    +F+ F   ++ G   G
Sbjct: 1459 LLSNGIKYSPIGSRVELSLQYENQQVIFEIRDQGIGIPLEDHPKLFDSFYRASNVGNIPG 1518

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             GLGL+IV+ ++NLHGG +  +S+ +  TT    +P
Sbjct: 1519 TGLGLNIVQKYVNLHGGTIDFTSTVKVGTTFKVSLP 1554


>gi|254520520|ref|ZP_05132576.1| sensory transduction histidine kinase [Clostridium sp. 7_2_43FAA]
 gi|226914269|gb|EEH99470.1| sensory transduction histidine kinase [Clostridium sp. 7_2_43FAA]
          Length = 473

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 124/215 (57%), Gaps = 5/215 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+L K D ++  F+ +VS+ELRSP+T+I GF   +    +     K++ Y+  ++   + 
Sbjct: 241 ESLEKVDNVRREFISNVSHELRSPITSIKGFITGIVDGVIPK--DKENYYLNIVNDEVSR 298

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVND+LD++T+++G  KL  + + +N+++     ++  K++E  IR++VI +     
Sbjct: 299 LSRLVNDLLDISTMESGKFKLKVAKLDINEIITLCTLNLEGKINEKKIRVEVIFNDSYEY 358

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSV 738
            + DR R++Q+ + +L NA+ +  +G  + ++     GDF++ S+ N+G +IP++    +
Sbjct: 359 CIGDRDRIIQVVTNLLENAIKYGDEGGRIQVETYA-KGDFVYVSIFNSGPNIPKEDINKI 417

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           + RF   +  R  +   GLGLSIV   ++ H   +
Sbjct: 418 WERFYKMDKARTNKISTGLGLSIVRLILSQHNQDI 452


>gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1005

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 13/246 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+   E    A+  K+ F+ ++S+ELR+PL  ++G   LL+    G L+  Q++ V    
Sbjct: 620 LSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLEA---GDLDRDQNELVHIAL 676

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL +++DILDL+ ++AG M+L +      + + +V    A       +R++   D
Sbjct: 677 DSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCD 736

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI 730
                   D  RL QI   +L NAM F+ +G+  +    ++   ++   +FSV + G  I
Sbjct: 737 ELPCEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTEESVRLLFSVSDTGIGI 796

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC- 786
           P D   S+F  F        RR  G GLGL IV   ++L GG +++ S+  EG     C 
Sbjct: 797 PHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGLNVESALGEGTAVHVCL 856

Query: 787 --RIPS 790
             R+PS
Sbjct: 857 PFRLPS 862


>gi|298387678|ref|ZP_06997229.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298259534|gb|EFI02407.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 921

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 131/248 (52%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + +R L    E    +D++K++F+ ++S+E+R+PL  I+GF+ L+  S+     
Sbjct: 513 DITELEKIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESE---NK 569

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  + E + A++  LL L+N+ILDL+ +++GI++   + I +N L  EV  +   +  
Sbjct: 570 EERKTFYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTP 629

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    +++I +      V   D+ R+ Q+FS ++ NA  F+  GS         N   +F
Sbjct: 630 QG---VQLIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGN-QIVF 685

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V + G+ I  +    VF RF    +  Q  G GLGLSI ++ +   GG +S+SS     
Sbjct: 686 HVTDTGTGIEPEKIGRVFERFAKLNNYAQ--GTGLGLSICKTIVERLGGEISVSSVVGQG 743

Query: 782 TTINCRIP 789
           TT    +P
Sbjct: 744 TTFTFTLP 751


>gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
 gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
          Length = 558

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++ ++Q    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMENQQFCEHFLNIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ + +LL E+K  +  K  +  I ++V    +  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLEEIKMVLENKSQDKEISLQV-DVLRHVS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G TV ++   D  +    V + G  I ++    +F
Sbjct: 441 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G V++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALP 552


>gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 954

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 26/295 (8%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFVNVTDSVRAERA 554
           W     +IT F  E+K +QG  +              PN   +     V++++    E  
Sbjct: 508 WSWEGKLITPFG-EKKWIQGISQPEQQ----------PNGDILWDGVVVDISERKLMEIK 556

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +    L +A  +K+ F+ ++S+ELR+PL  I+G ++ LK   LG+LN  Q   +  I 
Sbjct: 557 LQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKQGILGTLNPNQHHAIAMIE 616

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S   LL L++DILDL+ ++AG ++L  + + + +L N     +        I I+  I 
Sbjct: 617 KSGKHLLELISDILDLSKIEAGKLELYLTEVSVQELCNSSLTLVNHLAFTKQINIESNIP 676

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK---------AARDNGDFIFSV 723
                +F+  D +RL Q+   +LSNA+ F+ K   + L          A        FSV
Sbjct: 677 QQLQKTFIKVDNRRLRQVLINLLSNAVKFTHKAGKINLNVGIKPSTNLAISTPQSIYFSV 736

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +NG  I  D    +F  F  + ++   Q  G GLGL++V+  I LHGG V +SS
Sbjct: 737 VDNGIGIATDDLDKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSS 791


>gi|254442552|ref|ZP_05056028.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256860|gb|EDY81168.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 931

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 130/247 (52%), Gaps = 18/247 (7%)

Query: 543 VNVTDSVRAERALTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + +T   +A  A  ++ EA     ++A+E K++F+ ++S+E+R+P+  I+G   +L+ + 
Sbjct: 245 IEITKVNKALEAEIDRAEAFARRAKEAEEAKSNFLANMSHEIRTPMNGIVGMNTVLRET- 303

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN  Q +Y+E ++  S  L+ L+NDILD + ++AG +++  S   L ++L EV    
Sbjct: 304 --PLNDMQRRYLETMANCSESLMVLINDILDFSKIEAGKLEVENSAFDLIEVLEEVSSLF 361

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
                +  I +  + DG++   V  D  RL Q+ S +++NA+ F+ +G   I L+   D 
Sbjct: 362 GMTASQKGIDLICLQDGRMSEPVFGDPHRLKQVLSNLVNNAIKFTEEGEIEIGLRI--DE 419

Query: 717 GDFIFSVKN-----NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           G  + SV N      G  IPE + K +F  F        R+  G GLGL I +  + L G
Sbjct: 420 GGPLDSVANIWIQDTGIGIPESVQKRLFKAFSQADESTSRKFGGTGLGLVISQRLVELMG 479

Query: 770 GHVSISS 776
           G + I S
Sbjct: 480 GTIGIES 486


>gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 922

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ +K+ F+  VS+ELR+PLT I+G+  L+K   L     KQ   +  I  ++     +V
Sbjct: 527 ANRMKDEFLATVSHELRTPLTAILGWARLIKDKALAPERVKQG--MASIERNAHAQAQIV 584

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +DIL ++ +  G ++L    + L  ++     +I        I I+V     L     D 
Sbjct: 585 DDILTVSRIITGKLRLRTIAVDLAAVIEAAVDTITPTAKAKEIEIRVEPGEGLSHVCGDP 644

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   +LSNA+ F+ K   V ++  R +     SV +NG  I       VF+RF  
Sbjct: 645 DRLQQVMWNLLSNAVKFTPKRGLVTVRVGRSDSQVAISVTDNGKGIATSFLPYVFDRFRQ 704

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT---TINCRIPS 790
                 R   G+GLGL+IV   + LHGG V   S  EG     T+   +P+
Sbjct: 705 GDSSPTRAHGGLGLGLAIVRHLVELHGGTVEAESPGEGAGSTFTVTLPLPA 755


>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1702

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 12/225 (5%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            EA   A   K+ F+ ++S+E+R+P+  IIG TDL   ++L   N++Q +Y+  + +S+  
Sbjct: 1075 EAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL---NAEQREYLTMVQSSAAS 1131

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKL 677
            LL ++NDILD + ++AG ++L+ S   L  +L E  +++A + H+  + I   +I D   
Sbjct: 1132 LLTIINDILDFSKIEAGRLELDKSDFSLRTILYETLKTLAWRSHQKGLEIICDIIPDTP- 1190

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGD--FIFSVKNNGSSIPED 733
               + D  RL QI + ++ NA+ F+++G   +     D  NG+    FSV + G  IP +
Sbjct: 1191 DHLIGDPGRLRQIVTNLVGNAIKFTAEGEVSLTVKLEDITNGEVTLAFSVADTGIGIPAE 1250

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                +F  F        R+  G GLGL+I    + L GG +   S
Sbjct: 1251 KLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVELMGGKLKAES 1295


>gi|152991089|ref|YP_001356811.1| two-component sensor histidine kinase/response regulator
           [Nitratiruptor sp. SB155-2]
 gi|151422950|dbj|BAF70454.1| two-component sensor histidine kinase/response regulator
           [Nitratiruptor sp. SB155-2]
          Length = 1044

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 20/239 (8%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E AL +  +A   A+E    K+ F+ ++S+E+R+PL  IIGFTDLLK ++   L  +Q +
Sbjct: 376 ETALKKAQDAKTAAEEASHAKSMFLANMSHEIRTPLNGIIGFTDLLKNTE---LTPEQRE 432

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHEN 665
           +V  I  SS  LL ++N ILDL+ +++   K+    IV N  + E + +I   A +  E 
Sbjct: 433 FVNIIEKSSENLLEIINAILDLSKIESK--KIEIENIVFNP-IEEFENAIEVYAPRAAEK 489

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDF 719
           +I   +  D  L      D  ++ ++   ++SNA+ F+ +G  V      +K   +  + 
Sbjct: 490 DINFALFVDPHLNKPLKGDPTKIKEVLINLISNAIKFTDRGGNVTVEIRKVKEYNERAEI 549

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F V++ G  IPED  K +F  F        R+  G GLGL+I   FI L GG +++ S
Sbjct: 550 YFEVRDTGIGIPEDKQKQIFEAFSQADSSVTRKFGGTGLGLTISSEFIKLMGGRLNLES 608


>gi|156741101|ref|YP_001431230.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232429|gb|ABU57212.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 1042

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 181/365 (49%), Gaps = 26/365 (7%)

Query: 425  LETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            LE +Y T  + Q E    +D  SE +A+  PDG     N  F  ++    +++  G  + 
Sbjct: 655  LEVQYQTADRAQSELRAILDASSEVIALLAPDGAFLTVNRRFCDIFGVPADQVL-GRRLI 713

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQT 538
            ++ A    ++ ++D  +++  ++++  D +   +  +  L     E +I   P     Q 
Sbjct: 714  DMRAEIRWFFGDAD--EVYERMLSALQDAQDVFREQVVQLRPQHRELAIFSAPVWTANQV 771

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
             L  + V   V  ERA+          + +K+ FV  VS+ELR+PLT+I G+ D+L    
Sbjct: 772  HLGRLYVFRDVTHERAV----------ERMKSEFVAMVSHELRTPLTSIKGYIDMLLDGD 821

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             G L  +  + ++ + +++  LL L+ND+LD++ ++AG + L+ + + +  L+ +V  ++
Sbjct: 822  AGPLAVEHQELLQIVKSNADRLLLLINDLLDMSRIEAGKLMLHRAPLDVRPLIRQVATAL 881

Query: 659  ATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++   + R+     +   D        D  R+ QI + +LSNA+ ++ +G  + ++ +
Sbjct: 882  RPQLDAKHQRLNLDLSETPPDDAPPLMFGDAARVHQILTNVLSNAIKYTPQGGEISVRLS 941

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             +      +V++ G  +  +  + +F+RF    +R  R   G GLGL+I  S ++LH G 
Sbjct: 942  VEPPWMCIAVQDTGIGLTPEEQERIFDRFYRVRNRATREASGTGLGLAITRSLVDLHQGR 1001

Query: 772  VSISS 776
            +++ S
Sbjct: 1002 ITVES 1006


>gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
 gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
          Length = 558

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++ ++Q    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMENQQFCEHFLNIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ + +LL E+K  +  K  +  I ++V    +  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQV-DVLRHVS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G TV ++   D  +    V + G  I ++    +F
Sbjct: 441 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G V++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALP 552


>gi|188579782|ref|YP_001923227.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179343280|gb|ACB78692.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 786

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 9/244 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQY 609
           AER L +K  A   A++ K+ F+ ++S+ELR+PL  I+GF +L+++   GSL S + + Y
Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S T LL++++DIL ++ ++A  +KL    I L+  +      ++ +    ++ I
Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEANRVKLVRREIGLDAAIAAAVTLVSKEAASKSVAI 626

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +   G L + +AD + L QI   I+ NA+ F+ +G  V L+    NG     + + G  
Sbjct: 627 DIELAGTL-NVLADERALHQILLNIIQNAVKFTPEGGRVALRGRSCNGFAHLFIGDTGIG 685

Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785
           IP+     +   F +  +N  R   +G GLGL+I  S   LHGG + I  S+EGV T + 
Sbjct: 686 IPKAAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGVGTLVL 743

Query: 786 CRIP 789
            R+P
Sbjct: 744 VRLP 747


>gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1005

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 13/246 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+   E    A+  K+ F+ ++S+ELR+PL  ++G   LL+    G L+  Q++ V    
Sbjct: 620 LSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLEA---GDLDRDQNELVHIAL 676

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL +++DILDL+ ++AG M+L +      + + +V    A       +R++   D
Sbjct: 677 DSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCD 736

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI 730
                   D  RL QI   +L NAM F+ +G+  +    ++   ++   +FSV + G  I
Sbjct: 737 ELPCEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTEESVRLLFSVSDTGIGI 796

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC- 786
           P D   S+F  F        RR  G GLGL IV   ++L GG +++ S+  EG     C 
Sbjct: 797 PHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGLNVESALGEGTAVHVCL 856

Query: 787 --RIPS 790
             R+PS
Sbjct: 857 PFRLPS 862


>gi|332524438|ref|ZP_08400650.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107759|gb|EGJ08983.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 1021

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 140/260 (53%), Gaps = 9/260 (3%)

Query: 529 SIIPLPNAQTMLTFV---NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +++P P+ +         ++TD   AE A  E+  ALR++ + K+ F+  +S+ELR+PL 
Sbjct: 609 TVLPGPDGRPRRRIGVEWDITDRRAAEAARQERAIALRES-QAKSRFLSRMSHELRTPLN 667

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++GFT+LL     GS +    ++++ +  +   LL LV+D+LDLA+++ G M++    +
Sbjct: 668 AVLGFTELLLADS-GSRDGSWRRHLQAVRGAGQQLLALVDDVLDLASLEGGEMRVASERV 726

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  L  +  + +     + ++   VI+    G  +AD  RL Q+   +L+NA+ ++  G
Sbjct: 727 ALRGLALQALELVEPLRGQRDV--TVIAGTLDGIVLADAVRLRQVLQNLLTNAIKYNRDG 784

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764
             V +++ R +G  + SV ++G  + E   + +F  F      R    G G+GL IV+S 
Sbjct: 785 GLVEIESRRRDGKVLVSVADSGRGMTEQQLRHLFEPFNRLGLEREGIPGTGIGLVIVKSL 844

Query: 765 INLHGGHVSISSSDEGVTTI 784
           +   GG +S+ S+  GV T+
Sbjct: 845 VERMGGSISVRST-PGVGTV 863


>gi|149918695|ref|ZP_01907183.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149820536|gb|EDM79950.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 679

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 129/239 (53%), Gaps = 21/239 (8%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +RAL   ++A    D+ K  F+  VS+ELR+PL +I+GF  LL  +KL   N  Q + V+
Sbjct: 364 QRALDRTHDA----DQAKGEFLAAVSHELRTPLNSIMGFAQLLLETKL---NDSQVEDVK 416

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--- 668
            I A    L  L+ DILDL+ +++G + L      L++L+ E+       +H+  +R   
Sbjct: 417 LILAGGRQLHELIADILDLSMIESGELDLRVQHCALDELVAEL-----VDIHQAQVRDRE 471

Query: 669 IKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725
           +++++D    L +   DR+R+ Q+ + ++SNA+ F+  GS V ++A  +  D++  +V +
Sbjct: 472 LELVADVADDLPTIECDRRRIGQVLTNLMSNAIKFTETGS-VTVRARLEQDDYVSIAVID 530

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            G  I E     VF  +     R ++ +G GLGL+I    +  HGG +   S+  EG T
Sbjct: 531 TGIGIAESELPGVFEEYRQAGERKRKAKGTGLGLAIARRIVQAHGGRLEAESTLGEGST 589


>gi|126667179|ref|ZP_01738153.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
 gi|126628335|gb|EAZ98958.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
          Length = 969

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  IIGFT+LL     GSL  +Q  ++  I  SS
Sbjct: 290 RKEAL-EASRIKSEFLANMSHEIRTPLNGIIGFTELLLK---GSLARQQRDHLNTIRKSS 345

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
            ILL ++NDILD + ++AG +  +     L D++ EV   +A   H+ N+  + ++ +  
Sbjct: 346 EILLTIINDILDFSKIEAGKLTFDRVPFQLRDIVEEVMVMLAPAAHDKNLDLVTLVYNDV 405

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729
             + + D  RL QI + +L+NA+ F+  G  V+L+A+ +  D          SV + G  
Sbjct: 406 PNNLMGDPLRLKQIITNLLNNAIKFTHTGE-VVLRASLEEEDASNGSVTLRVSVADTGMG 464

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +     +S+F+ F        R+  G GLGL+I +      GG + + S
Sbjct: 465 LSRAQQRSLFDAFSQADASTARQYGGTGLGLAISKRLAEEMGGKIGLES 513


>gi|86142642|ref|ZP_01061081.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
 gi|85830674|gb|EAQ49132.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
          Length = 1205

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 14/236 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E +L +  +    A++ K+ F+ ++S+E+R+PL  +IGF D+L  S    LN  Q +Y+E
Sbjct: 674 EYSLIKAKQKAEAANKYKSEFLANMSHEIRTPLNGVIGFADILMKS---PLNENQQKYME 730

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I AS+  LL+L+NDILD + ++AG + L+   + + +L     + I  + ++ NI + +
Sbjct: 731 TIYASAISLLDLINDILDFSKIEAGKLSLSEERVNITELCGRSVEMIKHEAYQKNIEVLL 790

Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSV 723
               K+  + +AD  RL QI   +LSNA+ F+  G  + LK    N         F FS+
Sbjct: 791 NIPQKIDQYIIADGLRLRQILINLLSNAVKFTHDGE-IELKVEEQNSALHPNKKQFTFSL 849

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           ++ G  I E   + +F  F        R+  G GLGL+I    + L    + + S+
Sbjct: 850 RDTGIGISEQNLQEIFKAFNQGDASTTRKYGGTGLGLTISNRLLQLMESKLEVRST 905


>gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1076

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 126/240 (52%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+ +R+   L +  E      ++K  F+ ++S+E+R+P+  IIG  D+L  ++L   +
Sbjct: 543 DVTELLRSADELKKAKEEAEHLLKVKEQFLANMSHEIRTPMNGIIGMIDVLNETEL---D 599

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +YV  I  SS  LL ++NDILDL+ ++AG M +      L ++L  +      K  
Sbjct: 600 KSQREYVNTIRNSSETLLTILNDILDLSKLEAGQMNVEKKPFDLKEMLKNLVALFKQKAA 659

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDF 719
           E N  +K   D K+  + + DR RLLQI S + SNA+ F+  G+ +I    +   +   F
Sbjct: 660 ETNNLLKFEWDPKVHPYIIGDRIRLLQILSNLTSNAIKFTQNGNVIIRIQWEGQDEKTQF 719

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + F V + G  I E+  K +F  F  +  + +    G GLGL I +  + + GG + ++S
Sbjct: 720 LRFEVADTGIGISEENQKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIMGGEIGLTS 779


>gi|251781108|ref|ZP_04824028.1| histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085423|gb|EES51313.1| histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 431

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 122/214 (57%), Gaps = 6/214 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN  +  VS++LR+PLT+IIG+ DLLK ++      K   Y+E I   +  L  L+N++ 
Sbjct: 210 KNELITSVSHDLRTPLTSIIGYVDLLKKNEFND-KEKFDNYIEIIDERTKSLNRLINELF 268

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFV-ADRQR 686
           +   + +  +KLNYS + +  L+ ++        ++ N+  +K I+D  +  F+ AD ++
Sbjct: 269 EYTKLTSHDIKLNYSRLEIVSLIEQMVGEYTPIFNKENLEVVKDITDKDI--FINADIEK 326

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-N 745
           ++++   +L+NA+ +S K S V++K   +N   + SV N    I ED  K++F RF   +
Sbjct: 327 IVRVLENLLTNAIKYSVKNSKVLIKLFEENNYVVVSVSNKAKDITEDDLKNIFERFYKVD 386

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             R ++   GLGLSIV+  + LH G + ++ +++
Sbjct: 387 KSRKEQDSTGLGLSIVKRIVELHNGEIDVNLNED 420


>gi|90856146|gb|ABE01358.1| sensory histidine kinase/response regulator hybrid [Allochromatium
           vinosum]
          Length = 742

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 17/258 (6%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E +I  L + + +  + ++T+  RA+       EA  +A   K+ F+ ++S+E+R+P+  
Sbjct: 493 ENTIFKLSSGEVVAVYNDLTEIKRAQ-------EAAERASRAKSQFLANMSHEIRTPMNA 545

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +IG +DLL  +    L++KQ  Y+  I  SS +LL ++NDILD + ++AG + L+     
Sbjct: 546 VIGLSDLLLET---PLDAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFS 602

Query: 647 LNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L+DLL++++     +    +I  I  ++   L     D  RL Q+   +LSNA+ F+ +G
Sbjct: 603 LDDLLDQMRTLFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQG 662

Query: 706 STVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             V+    L A   +    F V++ G  I  +    +F  F        RR  G GLGL 
Sbjct: 663 QVVLSIRQLDAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLV 722

Query: 760 IVESFINLHGGHVSISSS 777
           I +  +   GG + + S+
Sbjct: 723 ISQKLVEKMGGTLVLEST 740


>gi|75910975|ref|YP_325271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704700|gb|ABA24376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1195

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 126/234 (53%), Gaps = 7/234 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + + EK E L  + + K+ F+ ++S+ELR+PL +++    LL  +  G+L++KQ +Y
Sbjct: 509 KARKFIEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNSSGNLSNKQVEY 568

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I ++ T LL L+NDILDLA +++G + +    I   DL + ++++      +  +  
Sbjct: 569 SQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIERTFRQVAQDKGLSF 628

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVK 724
            +  D +L S + +D +RL QI   +L+NA+ F+ +G   +   L     N   I F++ 
Sbjct: 629 SIELDERLPSTIFSDPKRLQQILKNLLANALKFTEEGGVTLRIGLDQINTNHPMITFAIS 688

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  IP++  + +F  F        R+  G GLGLSI      + GG + + S
Sbjct: 689 DTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELTQMLGGRLGLVS 742


>gi|89109037|ref|AP_002817.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. W3110]
 gi|1736873|dbj|BAA16014.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K12 substr. W3110]
          Length = 807

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|326776991|ref|ZP_08236256.1| histidine kinase [Streptomyces cf. griseus XylebKG-1]
 gi|326657324|gb|EGE42170.1| histidine kinase [Streptomyces cf. griseus XylebKG-1]
          Length = 460

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 4/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR+  E K  F +++S+ELR+P+  ++  T L+       L  +Q + +  I 
Sbjct: 210 LEEKSARLRETSEAKTRFWRNISHELRTPVNAVVALTRLMLAPDSAPLTDEQRRQLSLID 269

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   LL LV D+LD+A  +AG ++++     L  LL ++  ++       ++ + +   
Sbjct: 270 ASGESLLALVGDLLDVAKAEAGQLEVSTGPTDLRVLLAQLG-AVMRNTGTADVVLLMPEP 328

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L   +AD   L ++   +LSNA+ F+ KG  V L+   D     F+V + G  IPED 
Sbjct: 329 ADLPVAMADEALLTRVLRNLLSNALKFTEKGE-VRLEFRVDPPWMTFTVTDTGIGIPEDE 387

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F       QR  RG GLGL    +   L GG + +SS+    T +   +P
Sbjct: 388 LPRIFEDFYQVRGPLQRAHRGTGLGLPYARTLTELLGGTLRLSSTPGAGTRVEVELP 444


>gi|199597922|ref|ZP_03211347.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
 gi|229550854|ref|ZP_04439579.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|258507248|ref|YP_003169999.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|258538435|ref|YP_003172934.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
 gi|199591179|gb|EDY99260.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
 gi|229315804|gb|EEN81777.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|257147175|emb|CAR86148.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|257150111|emb|CAR89083.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
 gi|259648614|dbj|BAI40776.1| two-component sensor kinase [Lactobacillus rhamnosus GG]
          Length = 396

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 123/234 (52%), Gaps = 4/234 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S  ++  +Y       +  
Sbjct: 145 EEERRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDHQYRS-EAELLKYTHTAYLKAKQ 203

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+ +   V +   KLN     +  +L ++  S   + H+ ++RI V  +     
Sbjct: 204 MKVLVEDLFEYTKVKSTTTKLNPVRFNMIAMLEQLAASFELEAHKKHMRILVSGEPNPLM 263

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD ++L ++F+ ++ NA+ +   G  + L A R   + +  V N+G+ IP D    +F
Sbjct: 264 MEADTEKLGRVFNNLIVNALKYGQGGRHIFLDAQRIGSEVVVKVSNDGAQIPNDALSQLF 323

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +RF  V  +   +  G GLGL+I +S I LHGG++   SS E +T+    +P K
Sbjct: 324 DRFYRVEESRSQETGGTGLGLAIAQSIIALHGGYIYADSSPE-LTSFVIHLPLK 376


>gi|161520791|ref|YP_001584218.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189353027|ref|YP_001948654.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160344841|gb|ABX17926.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189337049|dbj|BAG46118.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 654

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 13/244 (5%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQY 609
           L    +A  +AD    +K+  +  VS+ELR+PL  I G+ ++L+     S++ +    Q 
Sbjct: 261 LRGARDARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLR-----SVDGQGFAQQA 315

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  S+  L  +V D+LD +++  G ++L  + + +  ++++  +      H   I +
Sbjct: 316 VDAIDRSARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITL 375

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                G      AD +RL Q+ S +LSNA+ F+  G  +++  AR +     SV + G  
Sbjct: 376 VTEGAGTACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVRLSVADTGQG 435

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-TINC 786
           +  +   ++F+ F   +NA    +RG+GLGLSIV +   LHGG V  +S   G   T+  
Sbjct: 436 MAPEALPNLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTVTV 495

Query: 787 RIPS 790
            +P+
Sbjct: 496 MLPA 499


>gi|159900753|ref|YP_001547000.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893792|gb|ABX06872.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1064

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 26/245 (10%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++ D +K   V ++S+ELR+PLT I+G+++LL   +   L    +  +E I      L
Sbjct: 545 ARKELDRLKEELVANMSHELRTPLTAILGYSELLLKRRTEVLTPWHTTKIEGIRTGGQRL 604

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L+LVND+LD+A +DAG ++L   T ++N LL E    +   + E    + +     +   
Sbjct: 605 LSLVNDLLDIAKLDAGRIELQRQTTIINSLLQEQVAILQPMLREKQQTLTLQLGQHIPLL 664

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------------- 718
           + D +R+ Q  + +LSNA+ F+ +  T+ L +   N D                      
Sbjct: 665 MIDPERIGQAVTNLLSNAIKFTPEQGTITLASTALNIDEHGQIDWLDQVLATEVPPMLAG 724

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +  V ++G  +P +    +++RF        RR  G GLGLSIV+  + LHGG    
Sbjct: 725 QYVLIQVSDSGVGVPAEALVKLWDRFYQVEGGSTRRFGGTGLGLSIVQQLVELHGGRTWA 784

Query: 775 SSSDE 779
           +S+ E
Sbjct: 785 TSAGE 789


>gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
 gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
          Length = 1389

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 4/244 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R+ +A   + E L + D  K +F  ++S+ELR+PLT I+G  + L+T +L     +  
Sbjct: 333 SARSYQAQQRRAEELAELDRAKTTFFSNISHELRTPLTLIMGPVEELRT-RLSGAGEEVH 391

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  +   L  LVN +LD + ++AG M+  Y  + L  +  E+     + +    +
Sbjct: 392 AELDVIHRNGLRLGKLVNTLLDFSRLEAGRMQARYEPVELAAVTAELASVFRSAVERAGL 451

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V           DR    ++   +LSNA+ F+ +G+ V ++  R   D +  V + G
Sbjct: 452 TLDVDCPALDEPVYVDRAMWEKVVLNLLSNALKFTFEGA-VRVRVRRSGPDAVVVVADTG 510

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           + +PE     +F RF  + NA      G G+GL++V   + LHGG +   S++   TT  
Sbjct: 511 TGVPEAEMPRLFERFHRIENARARSHEGSGIGLALVRELVGLHGGTIDAESTEGVGTTFT 570

Query: 786 CRIP 789
            RIP
Sbjct: 571 LRIP 574


>gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
 gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
          Length = 561

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++ ++Q    ++  I   S  
Sbjct: 328 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMENQQFCEHFLNIILKESER 384

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ + +LL E+K  +  K  +  I ++V    +  S
Sbjct: 385 MQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQV-DVLRHVS 443

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G TV ++   D  +    V + G  I ++    +F
Sbjct: 444 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIPRIF 503

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G V++ S     TT    +P
Sbjct: 504 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALP 555


>gi|170757669|ref|YP_001779992.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169122881|gb|ACA46717.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 617

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I     +L   K  + +  K+ QY
Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAKSYDKKEQY 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + I SVK+ G  
Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPED  +++F+RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567


>gi|323499989|ref|ZP_08104945.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
 gi|323314955|gb|EGA68010.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT+    L + Q+ Y++ I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTT----LTNSQTDYLQTIEKSAKNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + + +  D K+    
Sbjct: 340 NIINDILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+  I    R   D +    F V++ G  I E    
Sbjct: 400 VGDSLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQKDDVVELQFMVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501


>gi|325286240|ref|YP_004262030.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
 gi|324321694|gb|ADY29159.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
          Length = 457

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 145/251 (57%), Gaps = 17/251 (6%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++  +A+  + +A   +D++K++F+ ++S+E+ +P+  I+G  D LK  +L   N +  +
Sbjct: 213 IKHNKAVLARQKA-ESSDKLKSAFLANISHEIGTPMYGILGSADFLK--ELHKNNKESQE 269

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I  +   LL ++ DI++++ V++G+M LN ST  +N ++N    S+ T   E  I+
Sbjct: 270 YLQLIEENGNKLLGIIEDIVNISKVESGLMTLNNSTFNINSVINNTFNSVTTMAKEKGIQ 329

Query: 669 IKVISDGKLGSFVA----DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723
           I  I++  + S  A    D+++L  +   +++NA+ ++ +G T+ LK    N + I FS+
Sbjct: 330 I--INNNLISSNEALVHTDKEKLTTVLKHLINNAIKYTEQG-TITLKCYYKNFNTIEFSI 386

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE-G 780
           K+ G  +P+D   ++F  F  V    +    G G+GL+I +++  + GG +S+ ++ E G
Sbjct: 387 KDTGIGVPKDKIAAIFKAFYQVDTDQKNALHGAGIGLAIAKAYTEMLGGKMSLENNQENG 446

Query: 781 VT---TINCRI 788
            T   TIN ++
Sbjct: 447 ATFKFTINAQV 457


>gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 419 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 478

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 479 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 535

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 536 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 593

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++  SV++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 594 GDYLSISVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 653

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 654 VDSEPGMGSQFTLRIP 669


>gi|256424548|ref|YP_003125201.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256039456|gb|ACU63000.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 1203

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 150/296 (50%), Gaps = 17/296 (5%)

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VNVTDSVR 550
           +G+++F  +      ER+      +  S  ++   + P+ +   +  +    V++T+  +
Sbjct: 613 EGFEVFTYVPELEGSERREWTYIRKDGSQIIISMVVTPIRDNAVITGYLGIAVDITERKK 672

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           AER L E       A + K+ F+ ++S+E+R+PL  +IGFTDL LKT    +LN  Q QY
Sbjct: 673 AERDLKEAKIQAEYASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKT----ALNETQQQY 728

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  ++ S+  LL+++NDILD + ++AG ++L+ S   + +  ++    ++ +  +  + +
Sbjct: 729 VAIVNQSANSLLSIINDILDFSKIEAGKIELDISKCDIYEFSSQASDILSFQAQQKGLEM 788

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSV 723
            +    +L  F+ AD  RL QI   +LSNA+ F+ KG        I   +       F V
Sbjct: 789 LLNVSPELPRFMWADIVRLKQILLNLLSNAVKFTEKGEIELEIKPIAYPSVGMTTIRFEV 848

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           ++ G  I ++  + +F  F+       +R  G GLGLSI    + L G  + + S+
Sbjct: 849 RDTGIGIRKNKQEKIFEAFLQEDISTTKRYGGTGLGLSISNKLLALMGSKLQLEST 904


>gi|153939551|ref|YP_001389707.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|152935447|gb|ABS40945.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
          Length = 617

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I     +L   K  + +  K+ QY
Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAKSYDKKEQY 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + I SVK+ G  
Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPED  +++F+RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567


>gi|84393237|ref|ZP_00991999.1| sensor histidine kinase FexB [Vibrio splendidus 12B01]
 gi|84376143|gb|EAP93029.1| sensor histidine kinase FexB [Vibrio splendidus 12B01]
          Length = 813

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  IIG + +L  S+L +   KQ Q 
Sbjct: 264 RDITERKEHQESLEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQLTTEQRKQMQT 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 324 ---IKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPLNFEDFVVEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L + V  D  RL Q+   ++SNAM F+  G  V+  +A  +GDF      V++
Sbjct: 381 DLERLSDLPAAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSAEIDGDFANITMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++ +  IN+  GH+ + +S+EG  
Sbjct: 441 TGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLINMMDGHIEV-TSEEGFG 499

Query: 783 ---TINCRIP 789
              T++ R+P
Sbjct: 500 STFTVSIRVP 509


>gi|83944133|ref|ZP_00956589.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
 gi|83845000|gb|EAP82881.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
          Length = 550

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 4/229 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++++  F+  VS+ELRSPLT+I G   LL +   G L  K    +E    ++  L+ ++N
Sbjct: 306 EQLQADFISMVSHELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAHRNADRLVLIIN 365

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILD+  + +G +     T  L++L+ E  ++ AT      ++IK            D  
Sbjct: 366 DILDMEKISSGRLDFELETADLSELVAESLRANATAHQRFGLQIKCHGVDTPTYIETDAN 425

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF-- 742
           R++Q+ + ++SNA  FS  G TV +   +   +   SV++ G  I PED  K +F RF  
Sbjct: 426 RIIQVLTNLMSNAAKFSKPGGTVEISVDKTPENVCVSVRDEGMGIAPEDQHK-IFQRFAD 484

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++N+ R  + G GLGLSI ++ +   GG +   S +   TT    +P K
Sbjct: 485 MANSDRATKGGTGLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLPVK 533


>gi|228939140|ref|ZP_04101734.1| hypothetical protein bthur0008_18010 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972018|ref|ZP_04132635.1| hypothetical protein bthur0003_17950 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|229150235|ref|ZP_04278456.1| hypothetical protein bcere0011_17890 [Bacillus cereus m1550]
 gi|228633207|gb|EEK89815.1| hypothetical protein bcere0011_17890 [Bacillus cereus m1550]
 gi|228787677|gb|EEM35639.1| hypothetical protein bthur0003_17950 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820509|gb|EEM66540.1| hypothetical protein bthur0008_18010 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 443

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442


>gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 957

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 140/270 (51%), Gaps = 15/270 (5%)

Query: 530 IIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           II +   Q +L    ++++  R E  L +  +A   A+  K+ F+ ++S+E+R+P+  +I
Sbjct: 540 IITVNGEQCLLNITRDISERKRYEEELQQARQAAEAANRAKSEFLANMSHEIRTPMNGVI 599

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL+ ++L   NS+Q +Y++ +  S+  LL+L+NDILDL+ ++AG + L Y+   L 
Sbjct: 600 GMVQLLQFTRL---NSEQQEYLQCLETSAQNLLSLLNDILDLSKIEAGKISLEYADFSLR 656

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             + EV  +  +++H+  +++   ++D        D  RL QI   +L NA+ F++ GS 
Sbjct: 657 HSIQEVVTTQISQIHQKRLKLTTSLADDIPEILHGDPLRLKQILLNLLGNAIKFTAAGSI 716

Query: 708 VILKAAR----DNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
            I  AAR     NG      SV + G  +  +  + +F  F    +   RR  G GLGL+
Sbjct: 717 TI--AARITDQQNGTLTICLSVSDTGIGMTPEALQRIFAPFEQADNSTTRRFGGTGLGLT 774

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I      L GG +   SSD   ++    +P
Sbjct: 775 ICRRLAELMGGRIWAESSDGHGSSFFVELP 804


>gi|221210070|ref|ZP_03583051.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221170758|gb|EEE03224.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 688

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 12/233 (5%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQY 609
           L    +A  +AD    +K+  +  VS+ELR+PL  I G+ ++L+     S++ +    Q 
Sbjct: 295 LRGARDARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLR-----SVDGQGFAQQA 349

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  S+  L  +V D+LD +++  G ++L  + + +  ++++  +      H   I +
Sbjct: 350 VDAIDRSARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITL 409

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                G      AD +RL Q+ S +LSNA+ F+  G  +++  AR +     SV + G  
Sbjct: 410 VTEGAGTACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVSLSVADTGQG 469

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +  +    +F+ F   +NA    +RG+GLGLSIV +   LHGG V  +S   G
Sbjct: 470 MAPEALPHLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPG 522


>gi|188590027|ref|YP_001921841.1| histidine kinase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500308|gb|ACD53444.1| histidine kinase [Clostridium botulinum E3 str. Alaska E43]
          Length = 431

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 122/214 (57%), Gaps = 6/214 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN  +  VS++LR+PLT+IIG+ DLLK ++      K   Y+E I   +  L  L+N++ 
Sbjct: 210 KNELITSVSHDLRTPLTSIIGYVDLLKKNEFND-KEKFDNYIEVIDERTKSLNRLINELF 268

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFV-ADRQR 686
           +   + +  +KLNYS + +  L+ ++        ++ N+  +K I+D  +  F+ AD ++
Sbjct: 269 EYTKLTSHDIKLNYSRLEIVSLIEQMVGEYTPIFNKENLEVVKDITDKDI--FINADIEK 326

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-N 745
           ++++   IL+NA+ +S K S V++K   +N   + SV N    I E+  K++F RF   +
Sbjct: 327 IVRVLENILTNAIKYSVKNSKVLIKLFEENDYVVVSVLNKAKDITENDLKNIFERFYKVD 386

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             R ++   GLGLSIV+  + LH G + ++ ++E
Sbjct: 387 KSRKEQDSTGLGLSIVKRIVELHNGEIDVNLNEE 420


>gi|332981850|ref|YP_004463291.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699528|gb|AEE96469.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 477

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K +++K+ F+  VS+ELR+PLT I G+  +L T  +        + +  IS  +  L ++
Sbjct: 243 KKEKLKDEFIASVSHELRTPLTAIKGWAIILDTDDMDD-RKLLKEGLGIISNEADRLSSI 301

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V D+LD + + +G M+LN     +  +   VK  +A     N I+        +     D
Sbjct: 302 VEDLLDFSKLASGKMRLNRRKTDVKSVAEYVKTHMAPVAERNAIQFTTQCRDDIPVAYMD 361

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R+ Q+   +L NA  F+  G  V L A  +NG  IF VK+NGS I E+    +  +F 
Sbjct: 362 ADRMKQVLINVLDNAFKFTDTGGEVELMAWAENGHLIFDVKDNGSGIDEEDLAHIKQKFY 421

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  +   GLGLSI +  + LHGG + I SS    TT+  RIP
Sbjct: 422 KG--KNSKASSGLGLSIADEIVRLHGGSMDIDSSLNEGTTVTIRIP 465


>gi|260170560|ref|ZP_05756972.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one component system') [Bacteroides sp. D2]
          Length = 808

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VT++    + W F  +++ ++  E +   L ++   TI++L  G+ V       K  N  
Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506
           FR +++  E            A     Y N+  G   +D +  I+               
Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSG 379

Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +  E K   G L +L    +      L +   +    +VT+    +R L    E  
Sbjct: 380 KGMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKA 439

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +D +K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL 
Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+ILDL+ +++G ++ ++    L++L  EV  +   +  +    +   SD  L     
Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYEPSDESL-MIET 555

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+ Q+ S ++ NA+ F+ +GS        DN   +F V + G+ I  +    VF RF
Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIEPEKVGRVFERF 614

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  Q  G GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 659


>gi|291298578|ref|YP_003509856.1| GAF sensor hybrid histidine kinase [Stackebrandtia nassauensis DSM
            44728]
 gi|290567798|gb|ADD40763.1| GAF sensor hybrid histidine kinase [Stackebrandtia nassauensis DSM
            44728]
          Length = 1458

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 20/257 (7%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A   L EK E L +A   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ  + 
Sbjct: 1020 ARLGLEEKAEQLAQASRYKSQFLANISHELRTPLNSLLLLARLLAENTEQNLSPKQIDFA 1079

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I ++ + LL L++DILDL+ ++AG M ++   +   +L    + +   +  + N++  
Sbjct: 1080 RTIHSAGSDLLTLIDDILDLSKIEAGRMDVDPHEVSFTELCGRAEATFRPQAEDKNLQFS 1139

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------DNG 717
            V + DG    FV D Q+L Q+    LSNA+ F+  GS V LK  R            D  
Sbjct: 1140 VELEDGLPDVFVTDSQKLQQVLRNFLSNAVKFTDSGS-VTLKVGRTDPSYSFGISSLDGS 1198

Query: 718  D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
            D  + F+V + G  I +D  + +F  F   A  G  R   G GLGLSI +S+ +L GG +
Sbjct: 1199 DASYYFTVADTGIGISDDKMQMIFEPF-QQADGGTSRKYGGTGLGLSISKSYADLLGGAI 1257

Query: 773  SISSSDEGVTTINCRIP 789
             + +S    +T    +P
Sbjct: 1258 VVDTSPGRGSTFTLYVP 1274


>gi|209548975|ref|YP_002280892.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534731|gb|ACI54666.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 510

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 118/520 (22%), Positives = 221/520 (42%), Gaps = 55/520 (10%)

Query: 305 LTHTYE-ILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           + H++E IL NL   I + D  NR   F++R+   L   D A                + 
Sbjct: 1   MPHSFESILENLPQGIVLLDPANRVTAFNSRTLEILGLPDGAIGKG-----------MNI 49

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           ++LP   + +           +   H   + L +G+ + +    +  GG I  +E+++  
Sbjct: 50  DRLPGTADCRAAA---CRQSTTGRPHTSQFALSDGRMVSMTCAPSKEGGWILSYEDISTL 106

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + +E             + ++  G+ +F    ++ L NPA+  ++   +    PGT + +
Sbjct: 107 IRVEDSLTEQHHRFDAALSNMPHGLCMFDSTKKLILCNPAYARMYNLPDLLTQPGTPLVD 166

Query: 483 IAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           I A   R  N  +D    F  +  +      + Q  + L+   V++ +  P+ N   + T
Sbjct: 167 ILAYRGREGNGPADTATYFDVVFEATARGAVASQNIV-LVDGRVIKITHNPMQNGGYVAT 225

Query: 542 FVNVTDSVRAERALTEKNEAL-------------------------RKADEIKNSFVQHV 576
             +VT +VR    L   ++ L                         R  +E++  FV   
Sbjct: 226 HEDVTKTVRLTEELRRHHDQLETTVQSRTAEVERQARELERMLAQERNINELQRQFVAMA 285

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDA 635
           S+E R+PL  I      L   K G++  +  S  V+ I AS   +++L+  IL    +D 
Sbjct: 286 SHEFRTPLAIIDAAAQRL-LRKRGAVEPEFLSDKVDQIRASVNRIVDLMESILSAGRLDT 344

Query: 636 GIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           G + ++Y    L  L+     +QS   K H    R  +  DG L  F+ AD + + Q+F+
Sbjct: 345 GKIDISYDACALRSLIRSCCERQSTIAKTH----RFVLDIDG-LPEFIDADPRTVAQVFT 399

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR 751
            +LSNA+ ++   S + + A  + G+   S+ ++G  I PED+ + +F R+         
Sbjct: 400 NLLSNAVKYAPGTSEIRVTAWEETGNVKVSISDDGVGIDPEDVPR-LFQRYFRAGTSTGI 458

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G G+GL++V+  + LH G + + S+    +T    +P K
Sbjct: 459 AGTGIGLNLVKQIVELHHGSIEVRSARGCGSTFTVTLPIK 498


>gi|154498538|ref|ZP_02036916.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC
           29799]
 gi|150272606|gb|EDM99791.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC
           29799]
          Length = 589

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 163/355 (45%), Gaps = 38/355 (10%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAF-RSLWKT---EENRLSPGTHIRNIAATCSRYYNESDGW 497
           H+++GV  F  DG +   NPA  R L +T     + ++  T   +IAA  S    E  G+
Sbjct: 256 HMTDGVVAFSRDGAVIQCNPAAERMLHRTIPVGGDEVTYDTLFGDIAALPSVLAVEQPGY 315

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
                     D ER+        +  ++LE  + P  +       V + D       +TE
Sbjct: 316 ---------LDGERE--------IDGTILELLLAPFSSESAGGVMVVIHD-------VTE 351

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +    RK +E++  FV +VS+ELR+PLTNI  + + L  +      + +  ++  I   S
Sbjct: 352 Q----RKTEEMRREFVANVSHELRTPLTNIRSYAETLVDNAGELPPNMEKNFLGVILNES 407

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDG 675
             + ++V D+L L+  D+G  +L  +       + +V  ++    + H + +R+ +  + 
Sbjct: 408 DRMTHIVQDLLTLSRFDSGHSELKLAPFSFEGAIRDVYNAVLLDAQRHGHTLRLGI--EE 465

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L + + DR+R+LQ+   ++SNA+ ++  G ++ + A R        V +NG  IP    
Sbjct: 466 NLPNILGDRERILQVMMNVVSNAIKYTPDGGSIAISAGRLRDRVWMEVADNGIGIPAADR 525

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F RF  V  A   +  G GLGLSI +  I+ H G + +   D    T+   +
Sbjct: 526 PRIFERFYRVDKARSRESGGTGLGLSIAKEIIDRHEGVIRLVDKDGPGLTVRVEL 580


>gi|320354358|ref|YP_004195697.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
 gi|320122860|gb|ADW18406.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
          Length = 636

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 125/229 (54%), Gaps = 11/229 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           ++A   A+ +K+ F+ ++++E+R+P+  IIG+T++L  S L  L  K+ ++V  I  SS 
Sbjct: 155 SQAEESANRMKSEFIANINHEVRTPMNAIIGYTEMLANSTL--LGPKEKRFVAIIHKSSM 212

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-RIKVISDGKL 677
            L+ + NDI++L+ +D+G +++  S+I L  L+ EV+     +  E  I  I  I+    
Sbjct: 213 ALVAIFNDIMELSKIDSGRLQIMTSSIRLPTLIREVESLFKDQAEEKGIVLISRIAGHVP 272

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIP 731
            +F+ D  RL Q+   ++SNA+ F+S+G   +       KA     D  F+++++G  IP
Sbjct: 273 QNFILDGTRLKQVLQNLISNAIKFTSEGQVELTVDGSASKAQAGCYDLSFTIQDSGIGIP 332

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
               + +F  F        +R  GVGLGL++    + + GG + + S +
Sbjct: 333 AADQQKIFELFRQREDTIAKRYGGVGLGLTLCSRLVTMMGGRIDLLSKE 381


>gi|328541656|ref|YP_004301765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326411408|gb|ADZ68471.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 773

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 129/267 (48%), Gaps = 14/267 (5%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P  QT+L   +VTD    E  L    +    A+E K+ F+  VS+E+R+PL  I+G   L
Sbjct: 231 PVVQTVLR--DVTDRRLIEEDLLAARQNAESANEAKSRFLATVSHEIRTPLNGILGMAAL 288

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  ++   L  +Q+ Y++ + +S   LL L++++LD +  +AG + +  +   L  L+  
Sbjct: 289 LSDTR---LTPEQAAYIKALESSGETLLMLIDELLDFSRAEAGRLVVQPAPAALAPLVEN 345

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
           V + +A + H   + I V     L   V  D  RL QI   +  N + F+ +G   +   
Sbjct: 346 VAELLAPRAHAKGLEIAVRLHPHLPQTVTVDASRLRQILFNLAGNGIKFTDRGGVAVEVD 405

Query: 710 LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            + A D G  +  +V++ G    PED  + +F  F    H   RR  G GLGL+I +  +
Sbjct: 406 GRPAPDGGTLLDIAVRDTGIGFRPED-AERLFGEFEQVDHGPARRYGGTGLGLAIAQRLV 464

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            L GG ++ +S++         +P  E
Sbjct: 465 TLMGGTIAATSAEGAGAVFRVVLPVPE 491


>gi|221207869|ref|ZP_03580876.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221172366|gb|EEE04806.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
          Length = 751

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ ++L+ S   +L   + Q ++ 
Sbjct: 362 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTL---RVQAIDA 418

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  L  +V DILD +++  G ++L+   + +  L  +V  +  T      I ++  
Sbjct: 419 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFE 478

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S         D +RL Q+ S ++SNA+ F+  G  V +  A D+   + +V + G  I  
Sbjct: 479 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 538

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +    VF+ F    ++    RRG+GLGLSIV   + LHGG V + S+     TT   ++P
Sbjct: 539 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 598

Query: 790 S 790
           +
Sbjct: 599 A 599


>gi|317403603|gb|EFV84093.1| periplasmic sensor hybrid histidine kinase [Achromobacter
           xylosoxidans C54]
          Length = 925

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 11/247 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E AL +   A  +A E K  F   +S+E+R+PL  I+G  +LL    L  L 
Sbjct: 421 DITAQKKVEHALRQAKLATDRASESKAMFFATISHEIRTPLYGILGTLELLA---LTGLT 477

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q QY+  I  SS+ LL  +N  LDL+ ++AG  +L  S     DL+ +V  + A +  
Sbjct: 478 GQQEQYLNTIQQSSSTLLRTINGTLDLSRIEAGHEELEISAFSPADLVEQVVANYAARGR 537

Query: 664 ENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
              + +  I++ G   S + D  R+LQI + ++SNA+ F+  G  V+  +A   G     
Sbjct: 538 AKGLDVYAITEVGMPASALGDSIRILQILNNLVSNAVKFTEAGRVVLRASASAEGPGRTH 597

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F V + G  I E     +F  +     A      G GLGL+I     +L GG +S+  
Sbjct: 598 LRFQVADTGPGICETHRARLFEPYFRAPAAQDCDVAGTGLGLTICRRLSDLMGGSLSV-V 656

Query: 777 SDEGVTT 783
           S+EG+ T
Sbjct: 657 SEEGLGT 663


>gi|94500179|ref|ZP_01306713.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
 gi|94427752|gb|EAT12728.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
          Length = 908

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 131/256 (51%), Gaps = 12/256 (4%)

Query: 545 VTDSVRAERALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + + ++A +A  E  +   A       KN F+  +S+E+R+PL  I+G +DLLK +   +
Sbjct: 408 LKERLKANQAENESQQIRIAAEAESRAKNEFLAMMSHEIRTPLNGIMGMSDLLKNT---N 464

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +N  QS+YV  I  S   LL ++NDILD + + AG +++    I L DLL++     A  
Sbjct: 465 MNETQSRYVNTIYHSGESLLGIINDILDFSKILAGKLEIESVPIHLLDLLDQCAGIFAKD 524

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + + +I + + +   K     +D  RL Q+    LSNA+ F+ KGS  ++ +   N    
Sbjct: 525 IEKKDIDVTLELVPAKDIVIESDPVRLRQVILNYLSNAIKFTQKGSVQLILSVEGN-TLN 583

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             VK+ G  IP     S+F  F        R+  G GLGL+I +    L GG VS+ S++
Sbjct: 584 LKVKDTGIGIPPCKQASLFEAFAQADTSTTRQYGGTGLGLAICKKIAELMGGGVSVESNE 643

Query: 779 -EG-VTTINCRIPSKE 792
            EG V    C+I  +E
Sbjct: 644 NEGSVFEFYCQIHQQE 659


>gi|313499882|gb|ADR61248.1| Histidine kinase [Pseudomonas putida BIRD-1]
          Length = 935

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 35/297 (11%)

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           CS Y+  ++G  L+                    LS S   Y   P+     +  F +++
Sbjct: 401 CSDYFESAEGRHLY--------------------LSCSPTRYKGEPV----LLCAFSDIS 436

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              + E AL +   A   A+E K  F+  +S+E+R+PL  ++G  +LL  +    L+++Q
Sbjct: 437 ARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRT---VLDAQQ 493

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I  SS+ LL L+ D+LD++ ++AG + L  S     DL+ EV Q  +       
Sbjct: 494 RDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKG 553

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720
           +++    D +L    + D  R+ QI + +LSNA+ F+  G  V+L+A   N D      +
Sbjct: 554 LQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGR-VVLRARLLNRDGERSCLL 612

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + V + G  I E     +F+ F  +  H     G GLGL I +    L  G + + S
Sbjct: 613 WQVSDTGKGIAEQDQPFIFDPFYQTEGHSQVIPGTGLGLPICQRLTQLMNGQLRLVS 669


>gi|307316590|ref|ZP_07596033.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306897788|gb|EFN28531.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 917

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 133/265 (50%), Gaps = 7/265 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +P+  T+  + ++T+  + +  L         A+E K+ F+  +S+ELR+PL  IIG+++
Sbjct: 385 IPDGGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSE 444

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L        + +    ++ I+++   LL+L+NDILDL+ ++A  M++   T  + DLL 
Sbjct: 445 MLIEEARDHEDEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLR 504

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +V  ++A  M  N   +    +  LG   +D+ +L Q    +LSNA  F++ G  V L+ 
Sbjct: 505 DVAATVAPLMARNGNELTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRV 563

Query: 713 AR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            R    D    +F V + G  +  +  + +FN F        R   G GLGLSI  SF  
Sbjct: 564 RREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCR 623

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           + GG V++ S     +     +P++
Sbjct: 624 MIGGVVTVESEVGKGSVFTIEVPAQ 648


>gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 791

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 132/250 (52%), Gaps = 20/250 (8%)

Query: 542 FVNVTDSVRA----ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           FV V D + A    ER L +  +    ++  K+ F+  +S+E+R+P+  I+G ++LL  S
Sbjct: 349 FVAVKDDITARKKLERELQQARDRAESSNRAKSEFLALMSHEIRTPMNAILGMSELLAES 408

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L+ +Q + +     ++  LL+L+NDILDL+ V++G ++L+++ + L D   E++  
Sbjct: 409 ---NLSGEQRELLTVQRRAALALLDLINDILDLSRVESGRLELDHAPMHLPDFFIEIQDL 465

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD 715
              +  + N+   + + D    ++ ADR RL Q+   ++ NA+ F+ +G   I ++    
Sbjct: 466 FRQQAIKKNLAFSITLEDDLPKTYFADRARLRQVMINLVGNAIKFTQQGGVWISVERLSQ 525

Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVESFINL 767
            G+ +   FSV ++G  IP +    +F  F         H G   G GLGL+I +  + L
Sbjct: 526 QGEMVKLKFSVVDSGCGIPSEAQSQIFEPFTQADAYVTRHHG---GTGLGLTISQRLVQL 582

Query: 768 HGGHVSISSS 777
            GG + + S+
Sbjct: 583 FGGTLQVEST 592


>gi|229109466|ref|ZP_04239058.1| hypothetical protein bcere0018_17320 [Bacillus cereus Rock1-15]
 gi|228673963|gb|EEL29215.1| hypothetical protein bcere0018_17320 [Bacillus cereus Rock1-15]
          Length = 443

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442


>gi|182436367|ref|YP_001824086.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178464883|dbj|BAG19403.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 460

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 4/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR+  E K  F +++S+ELR+P+  ++  T L+       L  +Q + +  I 
Sbjct: 210 LEEKSARLRETSEAKTRFWRNISHELRTPVNAVVALTRLMLAPDSAPLTDEQRRQLSLID 269

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   LL LV D+LD+A  +AG ++++     L  LL ++  ++       ++ + +   
Sbjct: 270 ASGESLLALVGDLLDVAKAEAGQLEVSTGPTDLRVLLAQLG-AVMRNTGTADVVLLMPEP 328

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L   +AD   L ++   +LSNA+ F+ KG  V L+   D     F+V + G  IPED 
Sbjct: 329 ADLPVAMADEALLTRVLRNLLSNALKFTEKGE-VRLEFRVDPPWMTFTVTDTGIGIPEDE 387

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F       QR  RG GLGL    +   L GG + +SS+    T +   +P
Sbjct: 388 LPRIFEDFYQVRGPLQRAHRGTGLGLPYARTLTELLGGTLRLSSTPGAGTRVEVELP 444


>gi|149174262|ref|ZP_01852889.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
 gi|148846807|gb|EDL61143.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
          Length = 2453

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 132/249 (53%), Gaps = 10/249 (4%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q + T +++T   + E++L E  +    A+E K++F+ ++S+E+R+P+T I+G+ DL+  
Sbjct: 2043 QLIGTLLDITSQRQFEQSLKEARQMAEAANESKSAFLANMSHEIRTPMTAIMGYIDLIDE 2102

Query: 597  SKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 ++ K  + Y+  +  +   LL+++NDILDL+ ++AG + +       + LL +V 
Sbjct: 2103 ----LIDHKIATAYLSTVRRNGEFLLDIINDILDLSKIEAGKLDIIRERFSPHQLLEDVC 2158

Query: 656  QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +  EN + + +   GK+ + + +D +RL QI   ++ NA+ F+ KGS  I  +  
Sbjct: 2159 SIMDVRAAENRLELDIFYYGKIPAEIESDPKRLKQILINLVGNAIKFTMKGSVKIFVSCN 2218

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            D     F + + G  I     K +F  F    H   R   G GLGL+I +   N+ GG +
Sbjct: 2219 DQ-QLQFIIVDTGIGITTRQQKRLFRPFSQGDHTVNREFGGTGLGLAISQRLANMLGGEI 2277

Query: 773  SISSS-DEG 780
             + S  D+G
Sbjct: 2278 CVESEKDKG 2286


>gi|283853805|ref|ZP_06371028.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570809|gb|EFC18846.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1263

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 11/239 (4%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             E    A   K+ F+ ++S+E+R+PL  ++G   L+ T+    L+++Q +YV     SS 
Sbjct: 867  KETAENASRTKSEFLANMSHEIRTPLNGVLGMLQLMTTT---PLDTEQKEYVLAAIQSSK 923

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L  L++DILDL+ ++AG + +      L  L   V +       +  + +    D  L 
Sbjct: 924  RLTRLLSDILDLSRIEAGRLVIQEGEFTLAPLRTSVLELFFVAAKDKGLSLDFTLDPALP 983

Query: 679  S-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FSVKNNGSSIPE 732
               V D  RL QI   ++ NA+ F+ KGS  +        D +     F+V + G  IP 
Sbjct: 984  PRLVGDEARLRQILFNLVGNALKFTEKGSVTVAAVPLGATDAVPARVLFTVTDTGIGIPP 1043

Query: 733  DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D  + +F  FV       RR  G GLGLSIV+  + L GG + I ++    TT    +P
Sbjct: 1044 DRLRDIFEPFVQAEGTYTRRFQGAGLGLSIVKKLVGLMGGSLEIDTAPGQGTTCYLSLP 1102


>gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 597

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 167/353 (47%), Gaps = 32/353 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV  F  DG I ++NP    F   W  E+          N A T +    +    +L
Sbjct: 267 MADGVITFNRDGEILITNPPAERFLQAWYFEQG---------NGAETMAPLPPQVK--EL 315

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++   +++ +S++ +L+  +  +L   + PL +  T      V  +V   R +TE+ 
Sbjct: 316 FIRVVR--EEKEQSIELSLQGRTWVIL---MTPLYSKTT------VRGAVAVLRDMTEE- 363

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ D+++  FV +VS+ELR+P+  + G+++ +    + + + ++ +  + I   S  
Sbjct: 364 ---RRLDKLRKDFVANVSHELRTPIAMLQGYSEAI-IDDIAATDEEKKEMAKVIYDESLR 419

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVND+LDLA ++AG + L+Y T+ L   +  + +       E  I +      +   
Sbjct: 420 IGRLVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQIDLSAEFKNEDIQ 479

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R+ Q+ + ++ NA+  + K   V +   R        V+++GS IPE+    VF
Sbjct: 480 ITMDPDRIEQVLTNLIDNAIRHTDKNGMVKIIVERSGDGVTIHVQDSGSGIPEEDLPFVF 539

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF     A    R G GLGL+I ++ +  H G +S+ S     TT    +P+
Sbjct: 540 ERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFYLPN 592


>gi|161522483|ref|YP_001585412.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160346036|gb|ABX19120.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 799

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ ++L+ S   +L   + Q ++ 
Sbjct: 410 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDAL---RVQAIDA 466

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  L  +V DILD +++  G ++L+   + +  L  +V  +  T      I ++  
Sbjct: 467 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFE 526

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S         D +RL Q+ S ++SNA+ F+  G  V +  A D+   + +V + G  I  
Sbjct: 527 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 586

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +    VF+ F    ++    RRG+GLGLSIV   + LHGG V + S+     TT   ++P
Sbjct: 587 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 646

Query: 790 S 790
           +
Sbjct: 647 A 647


>gi|317054848|ref|YP_004103315.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315447117|gb|ADU20681.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 470

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 129/240 (53%), Gaps = 9/240 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  E    L+  D ++NSF+ +VS+ELR+P+T+I GF D L    +    +KQ  Y+  I
Sbjct: 229 AFNEMAANLKSYDTMRNSFLANVSHELRTPMTSIGGFVDGLLDGTIP--KAKQGYYLRII 286

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S+    L  LV  +L+LA ++AG ++ N +T  + + + +   +   ++ E NI I+ + 
Sbjct: 287 SSEVARLTRLVKSMLNLAKIEAGELEPNKTTFPVTEPILDTLLTFEPRIDEKNIEIRGLD 346

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSIP 731
             ++ S  AD   + Q+   ++ NA+ F + G  +  + + D G+ +   S++N+G  + 
Sbjct: 347 VQRI-SMYADIDLIHQVMYNLIENAIKFVNDGGYI--EFSFDEGEDVTSVSIRNSGEGLA 403

Query: 732 EDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED    VF+RF  ++  RG   +G+GLGL+I  S + +HGG + + S     T     IP
Sbjct: 404 EDELPLVFDRFYKTDKSRGIYAQGLGLGLNIARSIVEIHGGKIMVKSLKGEYTEFTFTIP 463


>gi|255011436|ref|ZP_05283562.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 522

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 131/249 (52%), Gaps = 9/249 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT++ + E+ L        +AD +K+SF+ ++S+E+R+PL  I+GF+ L+  +      
Sbjct: 281 DVTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEA---DDE 337

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY + +  +S++LLNL NDILDL+ ++AG ++L+Y  + L D+  ++ + +  K  
Sbjct: 338 YEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHE-LYVKSV 396

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           +  +R+ +           D +R+ QI   +++NA+ F+S G   I    ++  D + F 
Sbjct: 397 KPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFTSAGE--IHFGFQEKADMVQFY 454

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  IP +   ++F RF       Q  G GLGL+I    +   GG + + S     T
Sbjct: 455 VSDTGKGIPAERVATIFQRFGKIDDFVQ--GTGLGLTICRMLVEKMGGRIWVRSKQGKGT 512

Query: 783 TINCRIPSK 791
                +P K
Sbjct: 513 VFYFTLPVK 521


>gi|197124634|ref|YP_002136585.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196174483|gb|ACG75456.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 1843

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 125/248 (50%), Gaps = 11/248 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A R+L EK E L+     K+ F+ ++S+ELR+PL +++  + +L  ++ G+L  +Q ++ 
Sbjct: 1432 ASRSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVKFA 1491

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              +  S   LL L+N+ILDL+ ++AG M +      L  + ++++Q+         +  +
Sbjct: 1492 STVYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQ 1551

Query: 671  VISDGKLGSFVADR-----QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            V    ++G  + +R      RLLQI   ++SNA  F+ +G  V+       G   F+V++
Sbjct: 1552 V----RMGPDLPERIHTDPTRLLQILKNLISNAFKFTERGEVVLDVGPAAGGALAFAVRD 1607

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  IP D  K +F  F        R+  G GLGL+I      L GG + + S+    + 
Sbjct: 1608 TGIGIPADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVKSAPGRGSV 1667

Query: 784  INCRIPSK 791
                +P++
Sbjct: 1668 FTLVLPAR 1675


>gi|188584892|ref|YP_001916437.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349579|gb|ACB83849.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 120/218 (55%), Gaps = 3/218 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+K DE+K+ FV  VS+E R+PLT+I     LL     G +N  Q + ++ I   S  L 
Sbjct: 381 LKKVDELKSQFVSTVSHEFRTPLTSINMSIGLLLDKIPGDINDDQKELLQVIQEDSERLN 440

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVN++LDL+ +++G M++++    + +++    + +  +  E NI+IK+     L    
Sbjct: 441 RLVNELLDLSRIESGKMQMDFDYYDIKNIIQHAVKPLRIQAEEKNIQIKINVSDNLPKVR 500

Query: 682 ADRQRLLQIFSKILSNAMDFS-SKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           AD  ++  + S ++ NA+ ++ + G+ VI ++  +     + SV +NGS I E+  K +F
Sbjct: 501 ADHTKIGWVVSNLVGNALRYTPTDGTGVINIETKQTANKIVTSVTDNGSGISEEYQKIIF 560

Query: 740 NRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++F+  N     + G GLGL+I    +  HGG + + S
Sbjct: 561 DKFLQVNGGESTQGGAGLGLAISREIVRAHGGDMWVDS 598


>gi|152997039|ref|YP_001341874.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150837963|gb|ABR71939.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1426

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 134/255 (52%), Gaps = 17/255 (6%)

Query: 535 NAQTMLTFV-NVTDSVRAERALTE-----KNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           NA+  +T V  +   +  ER L +     K+EA   A   K++F+ ++S+E+R+P+  I+
Sbjct: 731 NAEGKMTKVTGINRDITQERGLEDWLRKAKDEA-DAASAAKSNFLANMSHEIRTPMNAIL 789

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   L+K +   +L  +Q+ YV     S+  LL+L+NDILD + VDAG ++L  +   + 
Sbjct: 790 GMLHLVKRT---TLTHQQNDYVSKAQISAKSLLSLINDILDFSKVDAGKLELEKAPFEVE 846

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST 707
           +LL E+   ++    E ++ +    D  + ++ + D+ RLLQI   ++SNA+ F+ +GS 
Sbjct: 847 ELLCELSTVLSGSSLEKDVELIFDIDKDIPAYLIGDKLRLLQILINLVSNAVKFTLEGSV 906

Query: 708 VI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
           V+    L           SVK+ G  I +D   S+F+ F        RR  G GLGL I 
Sbjct: 907 VLEIKQLSIDPRVSRLSVSVKDTGIGIAKDQIDSIFDVFSQGESSTARRFGGSGLGLVIC 966

Query: 762 ESFINLHGGHVSISS 776
             F+ L GG + + S
Sbjct: 967 RRFVELMGGSLQVDS 981


>gi|220929523|ref|YP_002506432.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999851|gb|ACL76452.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 598

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 132/237 (55%), Gaps = 15/237 (6%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           ++RK ++I+  FV +V++EL++PLT+I GF + LK   +    +   ++++ I   +  L
Sbjct: 368 SVRKLEQIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIED-TTVAVKFLDIIDIEAERL 426

Query: 621 LNLVNDILDLATVDA-----GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             L+ND L L+ ++A      +MK++     L  +++EV   + +   + NI ++V+++ 
Sbjct: 427 YMLINDTLQLSEIEAMRKDDSVMKID-----LIQIIDEVVLILKSSADKKNIALEVLANS 481

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                +A+R R+ Q+   ++ NA+ ++ +   + +K+ + NG+ + SVK+ G  IPE   
Sbjct: 482 AEVPVIANRNRIKQMLINLIDNAIKYNVENGKIYIKSEKANGNTVISVKDTGIGIPEKHH 541

Query: 736 KSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F RF     +G+ R   G GLGLSIV+  +NL+ G ++I S     T    ++P
Sbjct: 542 SRIFERFYR-VDKGRSRNMGGTGLGLSIVKHIVNLYSGDINIISEPGKGTEFIVKLP 597


>gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2450

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 16/255 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A  +L EK E L    + K+ F+ ++S+ELR+PL +++    LL  +K G+L+ KQ +Y 
Sbjct: 1720 ARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKDGNLSGKQVEYA 1779

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I AS   LL+L+N+ILDL+ V+AG M++    IVL +L   V +S      + N+   
Sbjct: 1780 NTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSFRPVAEQKNLSFD 1839

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------------ 717
            V +          D QRL Q+   +LSNA  F+ +G   ++    D G            
Sbjct: 1840 VELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGGVQLVVKLADKGVRFEHEVLKRAK 1899

Query: 718  -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F V + G  I +D  K +F  F        R+  G GLGLSI      L GG + +
Sbjct: 1900 RVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIHV 1959

Query: 775  SSSDEGVTTINCRIP 789
             S+    +T    +P
Sbjct: 1960 ESTLGKGSTFTLFLP 1974


>gi|37519668|ref|NP_923045.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35210659|dbj|BAC88040.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 785

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 5/229 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K+ F+  +S+ELRSPLT I+G+T LL+   LG++ +  +  +E I  ++     L
Sbjct: 403 EANRLKDEFLATLSHELRSPLTAILGWTKLLRQVDLGAVRAAHA--LEVIERNALAQNQL 460

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + D+LD++ + AG +++  + + L  ++     ++        I +    +  +   + D
Sbjct: 461 IEDLLDISRIVAGKLRIEAAAVDLAGVIEAAIGTVRPAAQARAIEVDTEIEPGVPLLMGD 520

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+   +L+NA+ F+  G  V ++ +R       +V ++G  I   +   VF RF 
Sbjct: 521 ATRLQQVVWNLLANAVKFTPNGGRVRVRLSRRGTAAEVAVSDSGLGIAPHLLPHVFERFR 580

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                  R   G+GLGL+IV   + LH G VS +S  EG   T   R+P
Sbjct: 581 QADSSSTRSHGGLGLGLAIVRQLVELHSGTVSAASPGEGQGATFTVRLP 629


>gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 775

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 122/235 (51%), Gaps = 7/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL+     S  
Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPAS-- 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+++L E    ++    
Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHISLSLEPVPLSNVLQEALVLVSPMAA 495

Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +  +     +LG  VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 496 DGNIELPALPQLPDELG-VVADRQRLIQVLLNLLSNAIKYNRPNGQVRIEVEQSAERVAV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           SV ++G  I  ++   +F  F          G GLGL++ +S + +  G +S+ S
Sbjct: 555 SVVDSGHGIAPELIDQLFKPFERLNADPSVEGTGLGLALSKSMLEMMHGTLSVHS 609


>gi|315918906|ref|ZP_07915146.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692781|gb|EFS29616.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 873

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VT++    + W F  +++ ++  E +   L ++   TI++L  G+ V       K  N  
Sbjct: 344 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 396

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506
           FR +++  E            A     Y N+  G   +D +  I+               
Sbjct: 397 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSG 444

Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +  E K   G L +L    +      L +   +    +VT+    +R L    E  
Sbjct: 445 KGMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKA 504

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +D +K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL 
Sbjct: 505 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 561

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+ILDL+ +++G ++ ++    L++L  EV  +   +  +    +   SD  L     
Sbjct: 562 LINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYEPSDESL-MIET 620

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+ Q+ S ++ NA+ F+ +GS        DN   +F V + G+ I  +    VF RF
Sbjct: 621 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIEPEKVGRVFERF 679

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  Q  G GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 680 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 724


>gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1076

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 34/286 (11%)

Query: 522 SDSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALR-------KADEIK 569
            D+ LE   +PL  A   +      + +VT   +A+  L   N  L+        A ++K
Sbjct: 492 PDTWLETIKVPLHQADGTIMGILGVYQDVTARQQADAKLRNVNAELQTAKDRADAASQVK 551

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+ELR+P+  +IG T LL  +   SL+++Q  +V+ I +S   LL L+NDILD
Sbjct: 552 SEFLANMSHELRTPMNAVIGMTGLLTHT---SLDAQQQDFVDTIRSSGDALLCLINDILD 608

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
            + ++AG +++      L   + E  + +A +  +  + I  ++D  L    V D  RL 
Sbjct: 609 FSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYLADPDLPCGIVGDVTRLR 668

Query: 689 QIFSKILSNAMDFSSKGSTVI--------LKAARDNGD--------FIFSVKNNGSSIPE 732
           Q+   +L+N + F+  G  ++        ++    +G         F F+VK+ G  IPE
Sbjct: 669 QVLVNLLTNGVKFTDNGEVIVYVKEVTAEIQDREGSGSEGQSPRRLFQFAVKDTGIGIPE 728

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           D    +F  F  V ++   +  G GLGL+I +    L GG + + S
Sbjct: 729 DRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGKIWVDS 774


>gi|313149253|ref|ZP_07811446.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138020|gb|EFR55380.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 525

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 131/249 (52%), Gaps = 9/249 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT++ + E+ L        +AD +K+SF+ ++S+E+R+PL  I+GF+ L+  +      
Sbjct: 284 DVTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEA---DDE 340

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY + +  +S++LLNL NDILDL+ ++AG ++L+Y  + L D+  ++ + +  K  
Sbjct: 341 YEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHE-LYVKSV 399

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           +  +R+ +           D +R+ QI   +++NA+ F+S G   I    ++  D + F 
Sbjct: 400 KPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFTSAGE--IHFGFQEKADMVQFY 457

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  IP +   ++F RF       Q  G GLGL+I    +   GG + + S     T
Sbjct: 458 VSDTGKGIPAERVATIFQRFGKIDDFVQ--GTGLGLTICRMLVEKMGGRIWVRSKQGKGT 515

Query: 783 TINCRIPSK 791
                +P K
Sbjct: 516 VFYFTLPVK 524


>gi|298530374|ref|ZP_07017776.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509748|gb|EFI33652.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 862

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 130/265 (49%), Gaps = 16/265 (6%)

Query: 529 SIIPLPNAQTM-----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           SI  + NA+ M      T +++T     E+ L    E   +A   +  F+  +S+E+R+P
Sbjct: 157 SITSIYNAEGMREGYLFTAMDLTLRKSLEQKLVAAKEEAEQASACRGEFLARMSHEIRTP 216

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I G   LL +++L   N  Q  YV  I  S+  LL ++NDILD + +DAG M+L   
Sbjct: 217 MNAITGMAYLLGSTEL---NHVQQDYVRKIIDSADTLLAIINDILDFSKIDAGRMELEEL 273

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L  ++  +   +  +  E  ++I+  I  G   S V D  RL QI   + SNA+ F+
Sbjct: 274 PFSLQQIIGRMLNVVGARAEEKGLKIQTHIHPGVPDSLVGDALRLGQIILNLCSNAVKFT 333

Query: 703 SKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           S+G    TV L+  R +  D +F V + G+ I  +  + +F  F        R+  G GL
Sbjct: 334 SQGEVALTVTLQKERQHQVDLLFCVSDTGTGITPEKAEQLFQAFQQADGSITRKYGGSGL 393

Query: 757 GLSIVESFINLHGGHVSISS-SDEG 780
           GL+I +    + GG + + S  D+G
Sbjct: 394 GLAICKELTQMMGGEIWVESIPDQG 418


>gi|209964312|ref|YP_002297227.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
 gi|209957778|gb|ACI98414.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
          Length = 911

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 129/246 (52%), Gaps = 7/246 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608
           RA  AL+  N  L + D +K+ F+  V++ELR+PLT++   +++L  +    L  +Q Q 
Sbjct: 654 RATEALSAANVRLMELDRMKDDFLSTVTHELRTPLTSVRALSEILYDTP--ELPEEQRQK 711

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++  I   S  L  L+N +LD+A ++AG +  + +++ +  L  E   S      +  + 
Sbjct: 712 FLATIIKESERLTRLINQVLDMAKIEAGEIDWHIASLDIAALAREAADSTRQLFRDKGVA 771

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNN 726
           +++ + +G L   + D  RL+Q+   +LSNA+ F+ ++G  V L           +V +N
Sbjct: 772 LELDLPEGNLPPALGDSDRLIQVMVNLLSNAVKFAPAEGGRVRLSLRPAPHALEVAVDDN 831

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +  ++VF +F  V +A  G+ +G GLGL+I    ++  GG + + S+     T 
Sbjct: 832 GPGIAPEYHEAVFEKFRQVGSAKTGKPQGTGLGLAICRRLVDGMGGRIWVESTPGAGATF 891

Query: 785 NCRIPS 790
             RIP+
Sbjct: 892 RFRIPA 897


>gi|78046888|ref|YP_363063.1| two-component system sensor/response regulator fusionprotein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035318|emb|CAJ22963.1| two-component system sensor/response regulator fusionprotein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 1068

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 134/265 (50%), Gaps = 11/265 (4%)

Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588
           QT +     T ++ A++   L  +N+ +R ++E+      K+ F+ ++S+ELR+PL + +
Sbjct: 337 QTNVQLEERTQALEAQKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 396

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
               LL  +K G+L+++Q +Y + I +S+  LL L+NDILDL+ ++AG ++L   T+V +
Sbjct: 397 ILAKLLADNKDGTLSAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTD 456

Query: 649 DLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +L  ++++       +        + G     V D QRL QI   +L+NA+ F+  G  
Sbjct: 457 SVLQRLRETFEPLARQKGLALEIAAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKV 516

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +   A   G   F+V + G  I  +  + +F  F       +RR  G GLGLSI     
Sbjct: 517 SLTVQAHAPGRVHFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 576

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG +S+ S     +     +P+
Sbjct: 577 QRMGGSISVDSEPGRGSCFTLELPT 601


>gi|325924825|ref|ZP_08186260.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|325544755|gb|EGD16103.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 1057

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 134/265 (50%), Gaps = 11/265 (4%)

Query: 537 QTMLTFVNVTDSVRAERA--LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNII 588
           QT +     T ++ A++   L  +N+ +R ++E+      K+ F+ ++S+ELR+PL + +
Sbjct: 326 QTNVQLEERTQALEAQKQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSAL 385

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
               LL  +K G+L+++Q +Y + I +S+  LL L+NDILDL+ ++AG ++L   T+V +
Sbjct: 386 ILAKLLADNKDGTLSAEQVKYAQAILSSNNDLLALINDILDLSKIEAGHVELADETVVTD 445

Query: 649 DLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +L  ++++       +        + G     V D QRL QI   +L+NA+ F+  G  
Sbjct: 446 SVLQRLRETFEPLARQKGLALEIAAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKV 505

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +   A   G   F+V + G  I  +  + +F  F       +RR  G GLGLSI     
Sbjct: 506 SLTVQAHAPGRVHFAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLA 565

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG +S+ S     +     +P+
Sbjct: 566 QRMGGSISVDSEPGRGSCFTLELPT 590


>gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1406

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 928  ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLSPKQVEFA 987

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  + + 
Sbjct: 988  ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1047

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN------------ 716
            V +S     +   D QRLLQ+   +LSNA+ F+  GS  ++++ ARD+            
Sbjct: 1048 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLET 1107

Query: 717  --------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                    G   FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1108 GSLTDPDGGLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1167

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1168 LLGGEIHAQSEPGRGSTFTLYLP 1190


>gi|225389641|ref|ZP_03759365.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM
            15981]
 gi|225044297|gb|EEG54543.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM
            15981]
          Length = 1430

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 132/249 (53%), Gaps = 15/249 (6%)

Query: 540  LTFVNVTDSVRAERALTEKNE-ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
            L   +VTD + AER    + E AL +A+E    K+ F+  +S+++R+P+  I+G T  L 
Sbjct: 1029 LVRADVTDMLAAERRTKRELENALSRAEEANRAKSDFLSTMSHDIRTPMNAIMGMT-ALA 1087

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             + LG    + +  ++ IS SS  LL+L+NDILD++ +++  + LN   I + ++L ++ 
Sbjct: 1088 MAHLGD-QERVTDCLQKISISSRHLLSLINDILDMSKIESSQITLNRMRISIREMLGQLS 1146

Query: 656  QSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA- 712
              ++++     +    I  G++    F  D  R+ QI   ILSNA+ ++ +G  V  +A 
Sbjct: 1147 AIMSSQARSAGLTFS-IQAGEIVHPCFYGDALRINQILINILSNAVKYTPEGGCVDFQAE 1205

Query: 713  -----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
                  RD   + F+V + G  + E+    VF  F  +    +  G GLGLSI +  +NL
Sbjct: 1206 EIPPVGRDCARYRFTVSDTGVGMTEEFLNHVFEPFTRSRQTTRVEGTGLGLSITKGLVNL 1265

Query: 768  HGGHVSISS 776
             GG +S+ S
Sbjct: 1266 MGGAISVES 1274


>gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2483

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 16/255 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A  +L EK E L    + K+ F+ ++S+ELR+PL +++    LL  +K G+L+ KQ +Y 
Sbjct: 1753 ARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKDGNLSGKQVEYA 1812

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I AS   LL+L+N+ILDL+ V+AG M++    IVL +L   V +S      + N+   
Sbjct: 1813 NTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSFRPVAEQKNLSFD 1872

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------------ 717
            V +          D QRL Q+   +LSNA  F+ +G   ++    D G            
Sbjct: 1873 VELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGGVQLVVKLADKGVRFEHEVLKRAK 1932

Query: 718  -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F V + G  I +D  K +F  F        R+  G GLGLSI      L GG + +
Sbjct: 1933 RVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIHV 1992

Query: 775  SSSDEGVTTINCRIP 789
             S+    +T    +P
Sbjct: 1993 ESTLGKGSTFTLFLP 2007


>gi|307153178|ref|YP_003888562.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
 gi|306983406|gb|ADN15287.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
          Length = 572

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 21/257 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +     +Q +++E 
Sbjct: 291 QELEQATHAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLI-LDGMADDPEEQREFLEE 349

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILDLA ++AG M LN S + LN+L   V      +  + N+  K+ 
Sbjct: 350 AHNSALHLLNLINDILDLAKIEAGKMVLNLSPVDLNELFEAVNNFTCPQAQQKNLSFKLK 409

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---------- 720
                   +   + QRLLQ+   ++ NA+ F+ +G  V+         F           
Sbjct: 410 KPHTHTPILLYGNYQRLLQVMLNLVGNAIKFTHEGGIVVSAEVVKKKIFCHDQEFPAIAK 469

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  +    +F +FV    +H     G GLGL+I +  +   GG +   S  
Sbjct: 470 ISVADTGIGVSLEQQAKLFEKFVQIDGSHTKAYGGTGLGLAISQKLVQAMGGQIDFYSMG 529

Query: 779 EGV------TTINCRIP 789
           EG+      T   C++P
Sbjct: 530 EGLGSTVTFTVPLCQVP 546


>gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 683

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 127/245 (51%), Gaps = 22/245 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE+AL E  E    A+  K+ F+  +S+E+R+P+  I+G  +LL  +    L+ +Q +Y
Sbjct: 134 QAEKALFEAKEEAEAANRAKSDFLASMSHEIRTPMHAILGMAELLLET---PLSPEQQRY 190

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE    +   LLN++NDILD++ V+AG ++L      L +++    +++A + H   + +
Sbjct: 191 VEIFRNAGENLLNIINDILDISKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLEL 250

Query: 670 K--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNG--- 717
              ++ D  + + + D  RL QI   ++ NA+ F+ KG  V+       L    + G   
Sbjct: 251 ACHILPDVPV-NLIGDPVRLQQILINLVGNAIKFTEKGEVVVHVEKSTELTGGPETGTEE 309

Query: 718 ----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
               + +FS+ + G  IP++    +F +F        R+  G GLGLSI    + + GGH
Sbjct: 310 GGKVELLFSIADTGIGIPQEKIDKMFEKFTQADSSTTRKHGGTGLGLSISRRLVEMMGGH 369

Query: 772 VSISS 776
           + + S
Sbjct: 370 IRLDS 374


>gi|253997050|ref|YP_003049114.1| histidine kinase [Methylotenera mobilis JLW8]
 gi|253983729|gb|ACT48587.1| histidine kinase [Methylotenera mobilis JLW8]
          Length = 656

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 5/215 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A+  K+ F+   S+ELR+PL  I+GF  LL+T  L  L  KQ + +  ISA+   LL 
Sbjct: 279 QEANAEKSIFLSRTSHELRTPLNAILGFAHLLETD-LTDL--KQKESLSMISAAGKHLLK 335

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++ +LD+A +++G M+++     ++ LL+E    +       +I+IK      L     
Sbjct: 336 LIDQVLDIARIESGDMQIDIQPCDISALLDEATHFMHPLAKARDIQIKTYYPPDL-VIAT 394

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DRQRLLQI   ++SNA+ +    + V ++A + +   I  V + G  IP+ M   VF  F
Sbjct: 395 DRQRLLQIVLNLISNALKYGPANAKVYMQAYKKDDKVIIEVADEGKGIPKSMHHRVFTPF 454

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               A   +  GVGLGL++    +   GG ++I+S
Sbjct: 455 ERLGAENTKVEGVGLGLALSNQMMAALGGEINIAS 489


>gi|238786887|ref|ZP_04630688.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
 gi|238725255|gb|EEQ16894.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
          Length = 1054

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 133/251 (52%), Gaps = 9/251 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  +  F +V+     E+ LT   +A  +A++ K++F+  +S+E+R+PL   +G  +LL
Sbjct: 443 QAVILCAFTDVSAHAEMEKHLTWAKQAADEANDAKSTFLATMSHEIRTPLYGALGTLELL 502

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L  LN++Q QYV+ I ++S +LL +++DILD++ ++AG ++L+ S     +L+ E 
Sbjct: 503 S---LTQLNNQQRQYVDRIESASQMLLQIISDILDISKIEAGQLQLDKSEFNPRELVQEC 559

Query: 655 KQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709
             + A   H   + +  +I+       + D  R+ QI + ++SNA+ F+  G+ V+    
Sbjct: 560 TGTYAGMAHRKGLLLFSIIATDIPERVIGDPARIRQILNNLISNAIKFTEIGTVVVRLSQ 619

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLH 768
           L+ +  +  F+  V ++G  I +   + +F  F + +A R    G GLG+SI      L 
Sbjct: 620 LERSSLSAKFLLEVCDSGVGIDKAEQEKLFTPFYMIDAERNMAGGAGLGMSICARLAELM 679

Query: 769 GGHVSISSSDE 779
              + + S  +
Sbjct: 680 DTKIQLRSEPQ 690


>gi|238026807|ref|YP_002911038.1| hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1]
 gi|237876001|gb|ACR28334.1| Hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1]
          Length = 773

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           L    +A R+AD    +K+  +  VS+ELR+PL  I G+ ++++     +L   Q Q ++
Sbjct: 367 LRGARDARRQADTSNRLKDELLAIVSHELRTPLNVIYGWVEVMRNPVAEAL---QRQAID 423

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  L  +V D+LD +++  G ++L+   + L  ++ +V  ++ T      I ++ 
Sbjct: 424 AIDRSARSLSRMVADLLDASSLATGKLRLDPMPVDLVRVVADVTGALGTTAANEGITLET 483

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +        D +RL Q+ S +LSNA  F+ +G  V +  +R+N   + SV + G  + 
Sbjct: 484 HCELDTCIVSGDAERLRQMLSNLLSNAFKFTPRGGRVTVALSRENARALLSVTDTGQGVA 543

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788
            +    VF  F     +    RRG+GLGLSIV     LHGG   ++S   G  TT    +
Sbjct: 544 PEFLPHVFEAFRRAEGSPASPRRGLGLGLSIVRHIAELHGGSARVTSDGTGHGTTFEVAL 603

Query: 789 PS 790
           P+
Sbjct: 604 PA 605


>gi|227328226|ref|ZP_03832250.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 935

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   ++V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 422 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 481

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL    ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +
Sbjct: 482 ---SLPQDANRLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSN 538

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + +  + +    D  +  S   D  RL Q+ S +LSNA+ F+  G  +     RD 
Sbjct: 539 YLPLVVKKRLTLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIIFEVGCRD- 597

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I
Sbjct: 598 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 657

Query: 775 SSSDEGVTTINCRIP 789
            S     +    RIP
Sbjct: 658 ESEPGLGSLFGVRIP 672


>gi|221369052|ref|YP_002520148.1| Sensor protein [Rhodobacter sphaeroides KD131]
 gi|221162104|gb|ACM03075.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 816

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 135/244 (55%), Gaps = 17/244 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++TF +VT++ RA     E+ EAL +A   K  F+  +S+E+R+P+ +I G T+LLK S+
Sbjct: 292 VVTFHDVTEARRAR----EQAEALARA---KTDFLATMSHEIRTPIHSIGGVTELLKQSE 344

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L    S+   YV+ I  S+ +L ++V+D+LD A +++G+++L      ++ +L++V + +
Sbjct: 345 LA---SRDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401

Query: 659 ATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              +     +RI VI    L   + D  +L QI   + SNA+ F+ +G TV++ A R  G
Sbjct: 402 QPLVRRKPQLRI-VIERTDLPPVLGDAGKLRQILINLTSNAVKFTPEG-TVVIGAERLAG 459

Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              F F+V + G  I  +  + +F  ++ +     RR  G GLGL+I        GG + 
Sbjct: 460 GHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLD 519

Query: 774 ISSS 777
           + S+
Sbjct: 520 VRST 523


>gi|257059588|ref|YP_003137476.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            8802]
 gi|256589754|gb|ACV00641.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            8802]
          Length = 1319

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 19/234 (8%)

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-----------NSKQSQY 609
            A R+ ++IKN F+  VS+ELR+PLT+++GF  L+   KL  +             K  Q 
Sbjct: 1068 AEREIEQIKNDFLATVSHELRTPLTSVLGFAALI-LDKLNRVIFPWVAIGDQPTQKAIQQ 1126

Query: 610  V----EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            V    E I A S  L +L+ND+LD+A +++G ++ N+ ++    +L     S ++   + 
Sbjct: 1127 VRNNLEIIVAESERLTSLINDVLDIAKIESGKVEWNFESVSPIIILERAIISTSSLFEDK 1186

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            N+R+       L     D+ RL+Q+   +LSNA+ F+  GS V  +A ++    + ++ +
Sbjct: 1187 NLRLIRDFSPDLPLIRGDQDRLIQVVINLLSNAVKFTEVGS-VTCQAQQNQEYLVIAITD 1245

Query: 726  NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             G  IP +    VF+RF  V N    + +G GLGLSI    I  HGG + + S 
Sbjct: 1246 TGIGIPHNEQNKVFDRFQQVGNVLTNKPQGNGLGLSICRQIIEHHGGQIWVESQ 1299


>gi|189348642|ref|YP_001941838.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189338780|dbj|BAG47848.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 767

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ ++L+ S   +L   + Q ++ 
Sbjct: 378 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDAL---RVQAIDA 434

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  L  +V DILD +++  G ++L+   + +  L  +V  +  T      I ++  
Sbjct: 435 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFE 494

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S         D +RL Q+ S ++SNA+ F+  G  V +  A D+   + +V + G  I  
Sbjct: 495 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 554

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +    VF+ F    ++    RRG+GLGLSIV   + LHGG V + S+     TT   ++P
Sbjct: 555 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 614

Query: 790 S 790
           +
Sbjct: 615 A 615


>gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134]
 gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134]
          Length = 1290

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 128/243 (52%), Gaps = 10/243 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++T   R ER L    +   +A   K  F+  +S+E+R+P+  +IG T +L  +K    
Sbjct: 887  LDITARKRFERELITAKQKAEEAALAKEQFLSTMSHEIRTPMNAVIGMTHVLLENKP--- 943

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
               Q + ++ +  S+  LL+L+NDILD   +DAG ++       L +L+  +++S A   
Sbjct: 944  RVDQLENLKILKFSAQTLLSLINDILDFTKIDAGKVEFEEVLFDLPELIESIQKSFAFTA 1003

Query: 663  HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
             E NI++K  +D  +    + D  RL Q+ + +++NA+ F+ KG   ++L+    N   +
Sbjct: 1004 QEKNIQLKFSTDTNIPHKVIGDPVRLTQVLTNLMNNAIKFTLKGEVKLMLQLITQNNRQV 1063

Query: 721  ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F+VK+ G  IP++  + +F+RF        R+  G GLGL+IV+  + L    + + 
Sbjct: 1064 QLRFTVKDTGVGIPKEKQQIIFDRFTQANPETIRKFGGTGLGLAIVKRLLELQDSQIHLE 1123

Query: 776  SSD 778
            S +
Sbjct: 1124 SEE 1126


>gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 587

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ + +LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|284036959|ref|YP_003386889.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283816252|gb|ADB38090.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 906

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+  NE L+++DE K+ FV  V++E+R+PLT+I   +++L   +     S + +++  + 
Sbjct: 667 LSLANERLKQSDEQKDDFVSTVTHEIRTPLTSIRALSEILH-DQADMDESMRQEFLSRVI 725

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L+N +LDL   D+G   L+   I + DL+ E  +++A    +  + +++   
Sbjct: 726 RETERLSRLINQVLDLERYDSGRYHLSTERISMVDLVAEAVENVAQLARDKQVTLEICPT 785

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIP 731
                   DR RL+Q+   +LSNA+ FS  G+   TV L    +  +   +V++NG  I 
Sbjct: 786 QAQPVVDGDRDRLMQVLINLLSNAIKFSPAGTGHVTVCLTIRDERVN--LTVRDNGIGIE 843

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D+ + +F +F    ++  R  +G GLGL+I +  I LH G +++SS         C +P
Sbjct: 844 PDVQQLIFEKFYQATNQTLRKPKGSGLGLAITKKIIALHNGQITVSSVPGEGAEFTCSLP 903

Query: 790 SKE 792
           + E
Sbjct: 904 ACE 906


>gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
 gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
          Length = 558

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 441 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|190574099|ref|YP_001971944.1| putative repetitive protein with two-component sensor and regulator
           motifs [Stenotrophomonas maltophilia K279a]
 gi|190012021|emb|CAQ45643.1| putative repetitive protein with two-component sensor and regulator
           motifs [Stenotrophomonas maltophilia K279a]
          Length = 1033

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 9/231 (3%)

Query: 555 LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           L  +++ +R ++E+      K+ F+ ++S+ELR+PL + +    LL  +K G+L  +Q +
Sbjct: 345 LVAQSQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTEEQVK 404

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I +S+  LL L+NDILDL+ ++AG ++L    +V + +L  ++++      +  + 
Sbjct: 405 YARAILSSNNDLLALINDILDLSRIEAGHVELADEVVVTDSVLQRLRETFEPMARQKGLA 464

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +D    S  V D QRL QI   +L+NA+ F+  G   +   A   G   F V ++G
Sbjct: 465 LQIEADALAPSQLVVDSQRLQQILKNLLANAVKFTEHGKVSLHVRAAGQGRIRFEVCDSG 524

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I  +  + +F  F       +RR  G GLGLSI        GG + + S
Sbjct: 525 IGIAREQLQVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIQVDS 575


>gi|189467629|ref|ZP_03016414.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
 gi|189435893|gb|EDV04878.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
          Length = 534

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 126/241 (52%), Gaps = 11/241 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++    + E  L    E     D +K++F+ ++S+E+R+PL  I+GF  +L    
Sbjct: 284 VITSVDIDHQKKIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASMLVEED 343

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               + K+ Q Y+E +  ++ +LL L++DILDL+ ++AG +  N   + + D   ++ + 
Sbjct: 344 ----DKKERQGYIEIMQENTELLLQLISDILDLSKIEAGTLDFNMGYLNIKDFCEDILRG 399

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
              K  +  + + + S+        D++RL+Q+ +  ++NA+ F+S+G  T+      D 
Sbjct: 400 YEIK-EDKPVPVLLASNLPDYRIYTDKKRLMQVVTNFINNALKFTSEGQITLEYHFKEDT 458

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  FSV + G  I  D    VF+RFV  N      +G GLGLSI  S I   GG + + 
Sbjct: 459 NEIEFSVTDTGIGIAPDAVGQVFDRFVKLNTF---SKGTGLGLSICRSIIEHLGGTIGLE 515

Query: 776 S 776
           S
Sbjct: 516 S 516


>gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 885

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 114/217 (52%), Gaps = 8/217 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTS---KLGSLNSKQSQYVEYISASSTILLNLVN 625
           K+ F+  +S+ELR+PL  I+GFT L+      K   L     +++E I  S   LLNL+N
Sbjct: 413 KSEFLARMSHELRTPLNAILGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLNLIN 472

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           D+L+++ ++AG + LN +   L  LL+ ++  +  K     +++    D  +  ++  D 
Sbjct: 473 DVLEMSKIEAGQISLNSAHFDLLKLLHCLRDMLELKAQSKGLKLLFEIDSDVPQYIQTDE 532

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNR 741
            +L Q+   +L NA+ F+  G  ++      N      IF V++ G  I  +  + VF  
Sbjct: 533 SKLRQVLINLLGNAIKFTDAGCIILRTKTVKNSKANRLIFEVEDTGYGISPEELQYVFKP 592

Query: 742 FV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F+ +   R  ++G GLGLSI + FI L GG +++SS 
Sbjct: 593 FIQTETGRKSQQGTGLGLSISQKFIKLMGGKITVSSQ 629


>gi|104780548|ref|YP_607046.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
 gi|95109535|emb|CAK14236.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
          Length = 918

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 331

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDG 675
             LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   + +   V  D 
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDT 391

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI- 730
            L S V D  RL QI + ++SNA+ F+ +G+ V+     D+ D       SV++ G  + 
Sbjct: 392 PL-SLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDDQDDTVQLRISVQDTGIGLS 450

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           P+D+ +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 451 PQDV-RTLFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 498


>gi|315497089|ref|YP_004085893.1| histidine kinase [Asticcacaulis excentricus CB 48]
 gi|315415101|gb|ADU11742.1| histidine kinase [Asticcacaulis excentricus CB 48]
          Length = 518

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 13/236 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           TDS    R +TE  EA   A ++K    F + +S+E+R+PL  ++G   LL  +   SL 
Sbjct: 13  TDS----RLMTEA-EAREAAQKLKAREDFFKLMSHEIRTPLNGVLGMLSLLNRT---SLT 64

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q  Y++    S   LL LVND+LD A ++AG + L    I L  LL  V + ++ + +
Sbjct: 65  AEQQSYLQTARESGEHLLTLVNDLLDYARIEAGHIHLESHLIELEPLLQSVAELLSPRAY 124

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              I I    D +L +   D  RL QI   +  NA+ F+  G  +I     + G   F V
Sbjct: 125 AGGIEIAWSLDPRLEAIEIDEGRLRQILFNLAGNALKFTKSGGVLIGVTLTEGGAIRFGV 184

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ G+ IPE+    +F  F  V  +H G Q  G GLGL +V+  I      + + S
Sbjct: 185 RDTGAGIPEEARVRIFEAFGQVDPSHAGAQYGGAGLGLVVVKKLIEAMNAELDLQS 240


>gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SMS-3-5]
 gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           SMS-3-5]
          Length = 949

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--QVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|160896184|ref|YP_001561766.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160361768|gb|ABX33381.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 841

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 9/264 (3%)

Query: 535 NAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           NAQ  +T     FV+V++   AE A  E  +A  +A  +K+ FV ++S+ELR+PL +I+G
Sbjct: 569 NAQGRITGVLSIFVDVSEFRAAEHATHEARDAAEEAFRVKSEFVANMSHELRTPLQSIMG 628

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F +L      G  N+  ++    I A+   +L LVND+LD+A +++ +  ++     L  
Sbjct: 629 FAELGGLRSHG--NAAMAEMFSDIHAAGQRMLALVNDLLDVAKLESAVGTIHLERTDLRS 686

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+  V + +  +     I +++  D       AD  R  Q+   +L+NA+ FS  G  + 
Sbjct: 687 LIRPVVRELEPQQQHKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRID 746

Query: 710 LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINL 767
           ++   D  GD   +V + G  IP      +F  FV S+  +    G GLGL+I    I+ 
Sbjct: 747 VQGRIDGQGDICIAVSDQGPGIPPQELDKIFQPFVQSSKTKNGSGGTGLGLAICRKIIDA 806

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
             G +  S+   G       +P++
Sbjct: 807 MDGTIVASNGPAGGAMFCITLPTR 830


>gi|91227847|ref|ZP_01262020.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
 gi|91188357|gb|EAS74653.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
          Length = 932

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q  Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQMDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G+  V ++    +GD +   F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|77465058|ref|YP_354561.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389476|gb|ABA80660.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 813

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 135/244 (55%), Gaps = 17/244 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++TF +VT++ RA     E+ EAL +A   K  F+  +S+E+R+P+ +I G T+LLK S+
Sbjct: 292 VVTFHDVTEARRAR----EQAEALARA---KTDFLATMSHEIRTPIHSIGGVTELLKQSE 344

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L    S+   YV+ I  S+ +L ++V+D+LD A +++G+++L      ++ +L++V + +
Sbjct: 345 LA---SRDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401

Query: 659 ATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              +     +RI VI    L   + D  +L QI   + SNA+ F+ +G TV++ A R  G
Sbjct: 402 QPLVRRKPQLRI-VIERTDLPPVLGDAGKLRQILINLTSNAVKFTPEG-TVVIGAERLAG 459

Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              F F+V + G  I  +  + +F  ++ +     RR  G GLGL+I        GG + 
Sbjct: 460 GHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLD 519

Query: 774 ISSS 777
           + S+
Sbjct: 520 VRST 523


>gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1002

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 166/380 (43%), Gaps = 40/380 (10%)

Query: 430 NTLVKVQG--ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           NTL + QG    +D+L++G+ V    G+I   NPAF ++     N L+       I    
Sbjct: 405 NTLAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTANTLNGHYQELPIFGLA 464

Query: 488 SRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
               +  S   ++F A +    D      GT         E +        + L   +VT
Sbjct: 465 DLIEHTRSHPGEVFTADVALAKDRIGQAVGTAIFKRTDTQEVAAC----FGSALLIRDVT 520

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--------- 597
                         A ++ D++K  F+  VS+ELR+PLT+++GF  +++           
Sbjct: 521 --------------AEKEIDKMKTDFISTVSHELRTPLTSVLGFASIIQEKLQKDVFPIL 566

Query: 598 -----KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
                KL     +    +  I + +  L +L+ND+LD+A ++AG ++     I   +LL+
Sbjct: 567 STEDRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPIDPGELLD 626

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
               S A     N +++    +  L   + DR RLLQ+   ++SNA+ F+  GS V  + 
Sbjct: 627 WATTSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFTEFGS-VTCRV 685

Query: 713 ARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
            +D      SV + G  I PED  K VF +F  V +    + +G GLGL I +  +  HG
Sbjct: 686 KQDKDGVCISVIDTGVGIAPEDQPK-VFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHG 744

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S     +  +  IP
Sbjct: 745 GRIWVESEPGHGSVFSFHIP 764


>gi|326939717|gb|AEA15613.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 452

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 231 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 288

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 289 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 346

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 347 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 406

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 407 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 451


>gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 598

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 168/353 (47%), Gaps = 32/353 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV  F  +G I ++NP    F   W  E+          N A T +    +    +L
Sbjct: 267 MADGVITFSREGEILITNPPAERFLQAWYFEQG---------NDAETMAPLPPQVK--EL 315

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           FA ++   +++ +S + T++  +  +L   + PL   +TM     V  +V   R +TE+ 
Sbjct: 316 FARVVR--EEKEQSTEVTIQGRTWVIL---MTPL-YGKTM-----VRGAVAVLRDMTEE- 363

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ D+++  F+ +VS+ELR+P+  + G+++ +    + +   ++ +  + I   S  
Sbjct: 364 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAASEEEKKEMAKVIYDESLR 419

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVND+LDLA ++AG ++L Y  + L   +  V +       E  I +      +   
Sbjct: 420 MGRLVNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIELTAEFRDENIE 479

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R+ Q+ + ++ NA+  +  G TV L   R        V+++GS IPE+    VF
Sbjct: 480 IAFDPDRIEQVLTNLIDNAIRHTEAGGTVRLIIERSGDGVTIHVQDSGSGIPEEDLPFVF 539

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF     A    R G GLGL+I ++ +  H G +++ S     TT +  +P+
Sbjct: 540 ERFYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFSFYLPA 592


>gi|315649484|ref|ZP_07902569.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315274957|gb|EFU38332.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 1219

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 135/255 (52%), Gaps = 14/255 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L ++ + L    + K+ F+ ++S+ELR+PL +++  + LL  +K G+L+ KQ +Y
Sbjct: 523 KARLKLEQQAKQLSVTTKYKSEFMANMSHELRTPLNSLLILSQLLSENKSGNLSDKQIEY 582

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S + LL ++++ILDL+ VDAG M++NY  + L D+ + V+Q+ A      +I +
Sbjct: 583 AQTIYMSGSDLLKMIDEILDLSKVDAGKMEINYEDVQLQDIESFVEQNFAAVASRKHIDL 642

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----------GD 718
            V I +    S V D  R+ Q+   +LSNA  F+++GS  +     D+           D
Sbjct: 643 HVHIGEDIPQSIVTDSHRVKQVLRNLLSNAFKFTNQGSVELHVEKADSEKLPIYLNAEAD 702

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           ++ F+VK++G  IP D    +F  F        R+  G GLGLSI      L GG + + 
Sbjct: 703 YVAFAVKDSGIGIPADKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGGGILVE 762

Query: 776 SSDEGVTTINCRIPS 790
           S +   +     +PS
Sbjct: 763 SEEGKGSCFTLFLPS 777


>gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 914

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 13/239 (5%)

Query: 548 SVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +++ E + TE   A  +A+E    K+ F+ ++S+E+R+P+  +IG  +LL  ++L   N+
Sbjct: 369 TIQLEESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRL---NA 425

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q +Y+  I+ S+  LL+L+NDILD + ++AG ++L +    L D L +  Q+ A +  E
Sbjct: 426 SQREYLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATE 485

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----F 719
             I +   ++     +   D  RL Q+   ++ NA+ F+ +G  V+  A     D     
Sbjct: 486 KGIELACHVALDVPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDVAVERMEDQQAWL 545

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F+V + G  I  D  K +F  F        RR  G GLGL+I    + L GG + + S
Sbjct: 546 RFAVSDTGPGIAADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDS 604


>gi|229178406|ref|ZP_04305774.1| hypothetical protein bcere0005_17670 [Bacillus cereus 172560W]
 gi|228605044|gb|EEK62497.1| hypothetical protein bcere0005_17670 [Bacillus cereus 172560W]
          Length = 443

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDYLTEEEIKQGMGI--ISGETDRLIH 279

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442


>gi|167766601|ref|ZP_02438654.1| hypothetical protein CLOSS21_01107 [Clostridium sp. SS2/1]
 gi|225026939|ref|ZP_03716131.1| hypothetical protein EUBHAL_01195 [Eubacterium hallii DSM 3353]
 gi|323487589|ref|ZP_08092879.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|167711724|gb|EDS22303.1| hypothetical protein CLOSS21_01107 [Clostridium sp. SS2/1]
 gi|224955750|gb|EEG36959.1| hypothetical protein EUBHAL_01195 [Eubacterium hallii DSM 3353]
 gi|291547392|emb|CBL20500.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Ruminococcus sp.
           SR1/5]
 gi|291558624|emb|CBL37424.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [butyrate-producing
           bacterium SSC/2]
 gi|323399088|gb|EGA91496.1| sensor protein [Clostridium symbiosum WAL-14163]
          Length = 354

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A ++A+E KN  + ++++++R+PLT +IG+  LL  +       ++ +YV+     +  
Sbjct: 123 QAAKQAEEKKNEIIMYLAHDIRTPLTTVIGYLSLLHEAP-DMPEQQKEKYVKVALNKAER 181

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+N++ ++   +A  + +   T+ L+ L+ +V   I   +  N       ++  L S
Sbjct: 182 LEKLINELFEITKYNAHTVIIKKETVDLHCLIAQVIDEIYPTLSANGNTAVFTAEDNL-S 240

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD ++L ++FS +L NA  +S   + + + A R   D   + +N+G +IP++   S+F
Sbjct: 241 VNADPEKLARVFSNLLRNAASYSYPQTEITISAKRLEHDIQITFENHGKTIPQEQLNSIF 300

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +F  + +A      G GLGLSI E  I+LHGG ++ SS +E +
Sbjct: 301 EKFNRLDDARLSNTGGAGLGLSIAEEIIHLHGGKITASSQNETI 344


>gi|153003413|ref|YP_001377738.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152026986|gb|ABS24754.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 1816

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A+ AL E+ + L  A + K+ F+ ++S+ELR+PL +++  + LL  +  G+L+ KQ  +
Sbjct: 1230 QAKAALEERAQQLAVASKYKSEFLANMSHELRTPLNSMLVLSKLLSDNADGNLSPKQVDF 1289

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I ++   LL L+NDILDL+ +++G M+++ S  +L  L + ++++      +  +R 
Sbjct: 1290 AQTIHSAGADLLALINDILDLSKIESGAMQVDVSECLLAGLQDYIERAFRQLASQKGLRF 1349

Query: 670  KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717
             V  D +  G+   D +RL QI   +LSNA  F+  G  V+  A    G           
Sbjct: 1350 AVEVDRRTPGAIWTDERRLQQIVRNLLSNAFKFTEHGEVVVRIAPARGGWSRDAEGLNAA 1409

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                  SV++ G  I  +  + +F  F        R+  G GLGLSI      L GG ++
Sbjct: 1410 GSVLALSVRDTGIGIAPEKQRIIFEAFQQADGTTSRKYGGTGLGLSISRELAKLLGGELA 1469

Query: 774  ISSSDEGVTTINCRIP 789
            + SS    +T    +P
Sbjct: 1470 VESSPGKGSTFTLYLP 1485


>gi|330446946|ref|ZP_08310597.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491137|dbj|GAA05094.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 931

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     LN+ Q  Y+  I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LNTSQKDYLLTIENSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
            ++NDILD + ++AG + L        D L+EV + +A   HE  + + +  D ++    
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDNRIPPGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ NA+ F+  G+   +V LK+  DN  +  F V++ G  I E    
Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDIDNNIELQFMVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG VS++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTS 501


>gi|227114441|ref|ZP_03828097.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 928

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   ++V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 415 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 474

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL    ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +
Sbjct: 475 ---SLPQDANRLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSN 531

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + +  + +    D  +  S   D  RL Q+ S +LSNA+ F+  G  +     RD 
Sbjct: 532 YLPLVVKKRLTLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIIFEVGCRD- 590

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I
Sbjct: 591 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 650

Query: 775 SSSDEGVTTINCRIP 789
            S     +    RIP
Sbjct: 651 ESEPGLGSLFGVRIP 665


>gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 713

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 20/245 (8%)

Query: 551 AERALTEKNEALRKADEI----------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           A R +TE+ EA+R  DE           K+ F+  VS+E R+PL  I+G  DL+  +   
Sbjct: 175 AGREITERIEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLDTP-- 232

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q  Y+  +  S   LL+L++ ILD + ++AG + L         L+  V + +A 
Sbjct: 233 -LSPEQETYIRAVKTSGEALLSLIDGILDFSKIEAGRLDLAAEPFDPAGLVESVVELLAP 291

Query: 661 KMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           +  +  + I   +  D  L   V D  R+ QI   +  NA+ F+  G  V + A R   +
Sbjct: 292 RAQDKGLEIAADLAEDLPL-QVVGDSDRVRQILLNLAGNAVKFTESGG-VGVTAERAGAE 349

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V++ G  IPE+    +F  F        RR  G GLGL+I    ++  GG + ++S
Sbjct: 350 IALTVRDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIEVTS 409

Query: 777 -SDEG 780
             DEG
Sbjct: 410 RPDEG 414


>gi|323139437|ref|ZP_08074486.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395308|gb|EFX97860.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 638

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVEYISASSTI 619
           ALR AD  K+ F+  +++ELR+PLT I     LL+  S+     ++  +  E +    + 
Sbjct: 267 ALRDADRRKDEFLATLAHELRNPLTPIRNAVHLLRLNSETPGRENRNPRLFEMVERQVSH 326

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHENNIRIKVISDG 675
           L+ LV+D+L+++ +  G ++L    + L  LL  V    + +I    HE  +R+ + S  
Sbjct: 327 LVRLVDDLLEVSRITRGKIELRKERLDLTALLRHVVDASQPAIQRGGHE--LRMDLPSAP 384

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +    AD  RL QIF+ +L NA  ++  G T+ L AAR       SV++NG  IP ++ 
Sbjct: 385 LI--LDADPVRLSQIFTNLLDNAAKYTEAGGTITLTAARQGAAATISVRDNGVGIPAELL 442

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
             VF+ F  V  +    + G+G+GL++V S + +HGG V   S+  G  +T   R+P
Sbjct: 443 PRVFDIFTQVDRSLGRAQGGLGIGLALVRSLVEMHGGSVEADSAGLGRGSTFVVRLP 499


>gi|312961645|ref|ZP_07776143.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
 gi|311283904|gb|EFQ62487.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
          Length = 917

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731
            L S V D  RL QI + ++SNA+ F+ +G+ V    I     DN     SV++ G  + 
Sbjct: 391 PL-SLVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDNVQLRISVQDTGIGLS 449

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 450 SQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|227432675|ref|ZP_03914648.1| sensor histidine kinase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351557|gb|EEJ41810.1| sensor histidine kinase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 361

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 139/261 (53%), Gaps = 6/261 (2%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P A T    ++V++++ AE     + E  R+++  K+  + ++S++LR+PLT IIG+  L
Sbjct: 104 PYAPTTQALIDVSNTI-AENTRRIREEE-RQSERSKDEMITNISHDLRTPLTAIIGYLGL 161

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +  S   ++ +Y+    + S  +  LV D+ + +   A    LN +++ LNDL  +
Sbjct: 162 VEMGQALSEKDRK-KYIHTAYSKSNQMKVLVEDLFEYSQTQAQDAALNITSLSLNDLFGQ 220

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +      +  E NI +  +++ ++    AD  +L ++   ++SNA  +    + + L A 
Sbjct: 221 LLAGYELEAQEKNIALNQLTNPEMIVIEADSDKLARVLMNLVSNAFKYGDGATFIKLTAQ 280

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            D+ + +  V N+G  IP++    +F+RF  V ++   +  G GLGL+IV+  +  H G 
Sbjct: 281 IDDKNVVIRVTNDGVKIPDEAIGDIFDRFYRVESSRNSKTGGTGLGLAIVKGIVVQHHGS 340

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           V++ S D+ +T+    +P K+
Sbjct: 341 VAVESDDD-ITSFIITLPLKQ 360


>gi|224538200|ref|ZP_03678739.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520195|gb|EEF89300.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 928

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 129/236 (54%), Gaps = 12/236 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E+ L E  E   +AD +K++F+ ++S+E+R+PL  I+GF+ LL +T   G  
Sbjct: 687 DITELKETEQKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVETEDQG-- 744

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y + +  ++ +LL L++DILDL+ ++AG        + +N L  +V++S+  ++
Sbjct: 745 --EKREYSKMVEENNELLLQLISDILDLSKIEAGTFDFKIRDLDVNTLCGDVQRSMKLRV 802

Query: 663 HENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                 ++++ +  L S   V+D  RL Q+ +  ++NA+ F++ G   I     D     
Sbjct: 803 KPG---VELLFEPTLPSCVIVSDPNRLHQVVANFVNNAIKFTTTGYIRIGYDQPDAKHLR 859

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V + G  I  + C+ +F+RF+      Q  G GLGLSI +S I   GG + + S
Sbjct: 860 IYVSDTGIGIAPEACEKIFDRFIKLNSFVQ--GTGLGLSISKSIIEQLGGTIGVDS 913


>gi|168183622|ref|ZP_02618286.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237797003|ref|YP_002864555.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182673215|gb|EDT85176.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229262568|gb|ACQ53601.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 469

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++        
Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPE--EKQNYYLKLTYEEIQR 296

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L  L+ND+LDL+ ++ G +KL+   I LN+++        TK+ +  +++ V + D K+ 
Sbjct: 297 LTRLINDLLDLSAIEEGHLKLDLEEIDLNEIIRTSVIKFETKIRDKKLKVNVSLEDDKV- 355

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  K +
Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++RF  ++  R  +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|288941879|ref|YP_003444119.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897251|gb|ADC63087.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1253

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 131/258 (50%), Gaps = 17/258 (6%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E +I  L + + +  + ++T+  RA+       EA  +A   K+ F+ ++S+E+R+P+  
Sbjct: 493 ENTIFKLSSGEVVAVYNDLTEIKRAQ-------EAAERASRAKSQFLANMSHEIRTPMNA 545

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +IG +DLL  +    L++KQ  Y+  I  SS +LL ++NDILD + ++AG + L+     
Sbjct: 546 VIGLSDLLLET---PLDAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFS 602

Query: 647 LNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L+DLL++++     +    +I +   ++   L     D  RL Q+   +LSNA+ F+ +G
Sbjct: 603 LDDLLDQMRTLFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQG 662

Query: 706 STVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             V+    L A   +    F V++ G  I  +    +F  F        RR  G GLGL 
Sbjct: 663 QVVLSIRQLDAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLV 722

Query: 760 IVESFINLHGGHVSISSS 777
           I +  +   GG + + S+
Sbjct: 723 ISQKLVEKMGGTLVLEST 740


>gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
           Bem]
 gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 511

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 119/236 (50%), Gaps = 25/236 (10%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ ++ K  FV  +S++L+SP+T ++G  DL++ +KLG +   QS+Y+     S   ++
Sbjct: 251 LKELEQEKEDFVSMLSHDLKSPITAVVGSIDLVREAKLGPVTPDQSEYLNAAIESCEEMV 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +++ +L +   +AG MKLN+     + L+N       T      I +       L +  
Sbjct: 311 EMIDTLLGIHKFEAGKMKLNFREEDPSLLINRSVTKFQTPAQRGAISLFATLPPSLPAIS 370

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARD--------------------NGDF 719
           ADR    +I   +LSNA+ F+ +G  + + A   +D                     G+F
Sbjct: 371 ADRSSFSRILGNLLSNAVKFTPEGGEIEVSADLVQDPAPVLAHVPEECYPGQELPREGEF 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +   V+++G  IP++   S+F+RFV   N  +G+ RG GLGL+     ++ HGG++
Sbjct: 431 VRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGLGLAFCRKAVDAHGGYI 486


>gi|90419932|ref|ZP_01227841.1| signal transduction histidine kinase [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90335973|gb|EAS49721.1| signal transduction histidine kinase [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1040

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 133/252 (52%), Gaps = 4/252 (1%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
            +++ + R E+ L +       A   K+ F+ +VS+ELR+PL  IIGF D++ T   G + 
Sbjct: 784  DISRAKRVEQELIKARSEAEAASLQKSQFLANVSHELRTPLNAIIGFADVIATECFGPIG 843

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            N +  +Y++ I  S   +L+LVND+LD++ ++AG ++L +  + LN+++ EV   +  + 
Sbjct: 844  NERYLEYLDDIKRSGHHVLDLVNDLLDISKIEAGKLELAFEAVSLNEVIGEVVALMQPQA 903

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIF 721
            +   + ++      +   VADR+ + QI   ++SNA+ F+  G  +I+  +    GD + 
Sbjct: 904  NREQVIVRSNLPSSVPPVVADRRSMRQIALNLVSNAVRFTPAGGQIIVSTSYSPEGDVVV 963

Query: 722  SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
              +++G  + ED  +     F  V+  +R +  G GLGL + ++    +    ++SS+  
Sbjct: 964  RFRDSGIGMSEDEIEIAMMPFQQVNPGNRRRGEGTGLGLPLTKALAEANRAGFAMSSTPG 1023

Query: 780  GVTTINCRIPSK 791
              T +    P +
Sbjct: 1024 EGTLVEISFPPQ 1035


>gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
 gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
          Length = 852

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 131/252 (51%), Gaps = 16/252 (6%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+ ++   +++D   AE AL    E    A++ + +F+ ++S+E+R+P+  IIG T+L  
Sbjct: 165 ARVLVLQRDISDVKAAESALISAKEVAESANKARGAFLANMSHEIRTPMNGIIGMTELAL 224

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++L   +++Q  Y++ + +S+  LL +VNDILD + ++AG M+       + D + E  
Sbjct: 225 DTQL---DAEQRHYLKTVKSSAEALLTIVNDILDFSKIEAGKMEFESLVFSMQDTVLEAV 281

Query: 656 QSIATKMHENNIRIKVISDGK---LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           + +A   H+    +++++D +       V D  RL Q+   ++ NA+ F+ +G  V LK 
Sbjct: 282 RVLAVSAHKKG--LELVADVRPEVPARIVGDPTRLRQVIINLIGNAIKFTERGE-VALKV 338

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
             D          FS+++ G  +P D  +++F  F        RR  G GLGL+I    +
Sbjct: 339 EVDQSTERSVYLRFSIRDTGIGVPADKQQAIFEAFSQADVSTTRRFGGTGLGLAISARLV 398

Query: 766 NLHGGHVSISSS 777
            L  G + + S+
Sbjct: 399 QLMDGKIWLEST 410


>gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70]
 gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218]
          Length = 949

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTVMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|303241560|ref|ZP_07328060.1| histidine kinase [Acetivibrio cellulolyticus CD2]
 gi|302590878|gb|EFL60626.1| histidine kinase [Acetivibrio cellulolyticus CD2]
          Length = 1240

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 3/235 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLN 603
           +T+    E  L E N  L++ D+ K  F  +VS+ELR+PLT I+G  + +L      +  
Sbjct: 585 ITEHKEIESMLIETNNKLKELDQAKTDFFSNVSHELRTPLTIILGQVEAVLSGQYYKNTL 644

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              S   + I +++  LL L+N +LD + + AG M LN   + +N  L+    ++ +   
Sbjct: 645 EPNSDIFKTIQSNALRLLKLINTLLDFSKIQAGKMTLNRQPVNINRFLSSYISAVKSSAS 704

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + NI +  + +        D+     + + ++SNA+ F+     +I++  + +  F   V
Sbjct: 705 QKNINMIFVDNADDTFGFIDKDLFEAVIANLISNALKFTDSEGYIIIELNKLDTSFEIVV 764

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           K++G  IP+D   ++F+RF  + N+   + RG G+GL+  +  + LH G +S+SS
Sbjct: 765 KDSGIGIPKDKLDTIFDRFSQIENSKSSKVRGTGIGLAYTKEIVELHEGKISVSS 819


>gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1821

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1339 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAAGNLSPKQVEFA 1398

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1399 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1458

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1459 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPQSIREQLLEA 1518

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  +GD I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1519 GSLRDPDGDLIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1578

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1579 LLGGEIHAASEPGRGSTFTLYLP 1601


>gi|253571812|ref|ZP_04849217.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838409|gb|EES66495.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 599

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 135/247 (54%), Gaps = 10/247 (4%)

Query: 532 PLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P  N   ML    ++T     E+ L +  E   +AD +K++F+ ++S+E+R+PL  I+GF
Sbjct: 346 PQDNVIEMLCINFDITQLKETEQMLIKAKEKAEEADCLKSAFLANMSHEIRTPLNAIVGF 405

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + +L+ ++      ++ QY+  I  ++ +LL L++DILDL+ ++A    +    +    L
Sbjct: 406 SSMLEEAE---DQEEKHQYITIIEDNNKLLLQLISDILDLSKIEAETFDIIPERVNAKQL 462

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            N++ Q+I  K     + +++  +    +F +D+ RL Q+    ++NA+ F+S+G+ + +
Sbjct: 463 CNDLFQAIQMKTSP-QVELRLKDNLPELTFTSDKNRLYQVLLNFVTNALKFTSEGN-ITI 520

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
               D  +  FSV++ G  I  +  +++F RFV  N+      G GLGLSI +S +   G
Sbjct: 521 DYQIDGNEVKFSVQDTGMGIEPEKQEAIFTRFVKLNSFIP---GTGLGLSICQSIVTQLG 577

Query: 770 GHVSISS 776
           G + + S
Sbjct: 578 GKIGVES 584


>gi|229043768|ref|ZP_04191468.1| hypothetical protein bcere0027_18130 [Bacillus cereus AH676]
 gi|228725569|gb|EEL76826.1| hypothetical protein bcere0027_18130 [Bacillus cereus AH676]
          Length = 443

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442


>gi|77917671|ref|YP_355486.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77543754|gb|ABA87316.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 867

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLPNAQTMLTFVNVTDSVRAERA 554
           D+F   ++   D    L+    + SD   E S+I   P P    + T      +VR+E  
Sbjct: 555 DVFGLQVSQVIDNDTLLKRLQAVASDKQEETSVIINLPEPGTDKVQTVQASLAAVRSEEG 614

Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L      L       R+ D +K  F+   ++ELR+PLT++IGF++++     G L  +Q+
Sbjct: 615 LKRGVITLLRDISRERELDLMKTEFISTAAHELRTPLTSVIGFSEVMLQQ--GGLTEQQT 672

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +++  I   + +L  +V D+LDLA VD G +++L      +N +L            ++ 
Sbjct: 673 EFLSIIHKKAEVLGKIVEDLLDLARVDTGQVIRLKKDWADVNGILARSVSDYRRVCQDHR 732

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            +  V+ D  +   V DR +L Q+   +LSNA+ FS   S + +     + +   +V + 
Sbjct: 733 FK-TVLPDAPIEMLVDDR-KLFQVMENLLSNAVKFSPVDSLIQVTCQLADNELYIAVSDQ 790

Query: 727 GSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  +       +F++F   +A    R G+GLG++IV+S +  H G + ++S     TT+ 
Sbjct: 791 GIGMQPAQIDRMFDKFYRVDASNTAREGLGLGMAIVKSIVEAHNGRIWVTSKPNRGTTVT 850

Query: 786 CRIP 789
             +P
Sbjct: 851 FTLP 854


>gi|127511913|ref|YP_001093110.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126637208|gb|ABO22851.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1171

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 126/232 (54%), Gaps = 10/232 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ +  + + L+KA  +K+SF+ ++S+E+R+PL  I+G  +L++     SL  +Q++Y+E
Sbjct: 494 EKKVAIRTQELQKASLVKSSFISNISHEMRTPLNGIVGTLNLVRKD---SLTERQARYLE 550

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S   L  L+ND+LDL+ ++AG + L+ S+    +L+  V  S+A K  E  I   +
Sbjct: 551 MAEVSVNTLSALINDVLDLSKIEAGKLDLDMSSFNPLNLIESVCSSMAVKAQEKGIEFVI 610

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNG--DFIFSVKNN 726
            + D +  S  +D  R+ QI + +++NA+ F+  G   +   +  R+ G  +FI  V + 
Sbjct: 611 DVVDLRCQSVDSDPHRITQILTNLINNAIKFTDHGYIKVRAHSRLRETGELEFICEVSDT 670

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  I E+    +F  F   +++   Q  G GLGLSI +    L  G +S  S
Sbjct: 671 GIGIAEENQAKLFTAFSQATSSIAAQYGGTGLGLSICKELSELLNGKMSFES 722


>gi|332560655|ref|ZP_08414973.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
 gi|332274453|gb|EGJ19769.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
          Length = 816

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 135/244 (55%), Gaps = 17/244 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++TF +VT++ RA     E+ EAL +A   K  F+  +S+E+R+P+ +I G T+LLK S+
Sbjct: 292 VVTFHDVTEARRAR----EQAEALARA---KTDFLATMSHEIRTPIHSIGGVTELLKQSE 344

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L    S+   YV+ I  S+ +L ++V+D+LD A +++G+++L      ++ +L++V + +
Sbjct: 345 LA---SRDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401

Query: 659 ATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              +     +RI VI    L   + D  +L QI   + SNA+ F+ +G TV++ A R  G
Sbjct: 402 QPLVRRKPQLRI-VIERTDLPPVLGDAGKLRQILINLTSNAVKFTPEG-TVVIGAERLAG 459

Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              F F+V + G  I  +  + +F  ++ +     RR  G GLGL+I        GG + 
Sbjct: 460 GHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLD 519

Query: 774 ISSS 777
           + S+
Sbjct: 520 VRST 523


>gi|329849356|ref|ZP_08264202.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328841267|gb|EGF90837.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 535

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 127/240 (52%), Gaps = 8/240 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           + + D  R  RAL    E    A+  K+ F+ ++S+E+R+P+  I+G + +LK S+   L
Sbjct: 137 IYLEDRERQTRALEIAVEKANAANTAKSEFLANMSHEIRTPMNAILGLSTILKHSQ--PL 194

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q +Y++ + ASS  LL L+ND+LD+A ++A  +++ +    L+ ++ ++   +  K 
Sbjct: 195 TEQQHKYIDTLGASSESLLMLINDLLDIAKIEASGIEIEHIPFQLDQVIRDIADMMGLKA 254

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---D 718
            E ++ +++  D   G  F  D  RL QI + + SNA+ F+  G   I+ A+   G    
Sbjct: 255 REKDLDLRLDLDHIQGKWFCGDPARLRQIVTNLCSNAIKFTDSGEVAIIVASAPQGRHCH 314

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              SV + G  I  D    +F +F    +   R+  G GLGL+I ++   L GG +++ S
Sbjct: 315 ITISVTDTGVGIAPDKLDRIFAKFTQADNTISRKFGGTGLGLAISKTLAELMGGTIAVES 374


>gi|229172696|ref|ZP_04300253.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3]
 gi|228610736|gb|EEK68001.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3]
          Length = 438

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   +  + KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 206 HSLNHMSNKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 264

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 265 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 323

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR RL Q+F  I+ NA+ +S K   V ++A ++ G  +  VK+ G  I
Sbjct: 324 TIERIEL---MGDRNRLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDEGIGI 380

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG +S  S +   TTI  ++P
Sbjct: 381 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTLSFISKEGIGTTILIKLP 437


>gi|302325748|gb|ADL24949.1| sensory box histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1008

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 140/262 (53%), Gaps = 27/262 (10%)

Query: 537 QTMLTFVNVTDSVRAE-----------RALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           Q +  F++V +S R +            AL +   A + A+  K  F+  +S+E+R+PL 
Sbjct: 594 QIVAGFISVDESTRLQLEQKEQLETQAEALKQALSAAQAANSAKKEFLNSISHEIRTPLN 653

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG T +  T  LG     +   V+ I  SS  LL+++NDILD++ +++G   L  + +
Sbjct: 654 AVIGLTSIASTH-LGDAERVKDCLVK-IDQSSDRLLSIINDILDMSRIESGKFDLKEAPM 711

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV----ISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            L +L++EV++ I   +   +++ ++    I+D ++   V DR+RL Q   K+LSNA+ F
Sbjct: 712 HLFELVHEVERDIRNDLQAKDLKFELDCVDINDDEV---VCDRERLRQALLKVLSNAIKF 768

Query: 702 SSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGV 754
           + +G ++ +              + F +K+NG  + E+  K+V+  F   +   +  RG+
Sbjct: 769 TKEGGSISMSVKETPLTKSSYAAYEFRIKDNGIGMSEEFLKTVYEPFARESTVSRDVRGM 828

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLGL+I ++ + + GG + I+S
Sbjct: 829 GLGLAITKNSVEMMGGQIEIAS 850


>gi|172038471|ref|YP_001804972.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
 gi|171699925|gb|ACB52906.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
          Length = 1680

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 15/226 (6%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            R+ D +K  F+  VS+ELR+PLT++ G   LL    L          ++ +  +   L+ 
Sbjct: 1439 RELDRLKTEFISVVSHELRTPLTSMRGALGLLNAGVLQEEPETVEHMLKIVLRNCDRLIR 1498

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
            LVNDILDL  +++G ++L      +++LL +  ++I+    E +I I++ S   + ++V 
Sbjct: 1499 LVNDILDLERLESGKVRLIKEVCQVDNLLTDAVETISAMATEASITIELTS---ISAYVW 1555

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------ARDNGDFIFSVKNNGSSIPE 732
            A    ++Q  + +LSNA+ FS++G+ + L A         A+     +FSVK+ G  IP 
Sbjct: 1556 ASHDAIIQTLTNLLSNAIKFSTEGTKICLTAKLFNDPDSTAQTPSFVLFSVKDQGRGIPT 1615

Query: 733  DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  +++F RF  V  +   Q+ G GLGL+I +S I  H G + + S
Sbjct: 1616 NKLQTIFGRFQQVDASDARQKGGTGLGLAICQSIIQQHNGRIWVDS 1661


>gi|170741630|ref|YP_001770285.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195904|gb|ACA17851.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1362

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 18/248 (7%)

Query: 544  NVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +VT  +RAERAL +              A   K+ F+  +S+E+R+PL  I+G+ DLL  
Sbjct: 858  DVTPRMRAERALKQATRLAEQAREEAEAASTAKSEFLAMMSHEIRTPLHGILGYADLL-- 915

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            ++ G L ++Q + VE+I  +   LL +VND+LD + ++AG + L+     L  L+ EV  
Sbjct: 916  TECGLLAAEQQRQVEHIRTAGRALLAVVNDVLDFSAIEAGRVALDPRPFALRALIGEVVA 975

Query: 657  SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712
             +        + +    D  +  + V D+ R+ Q+   + +NA  F   GS  +  A   
Sbjct: 976  IVREPAERKGLTLAAEIDPAVPDWLVGDQGRVRQVLLNLAANAQKFCHAGSVTLSVAPDR 1035

Query: 713  -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768
             A +     F+V++ G  I ED    +F RF S A    RR   G GLGL+I ++ +   
Sbjct: 1036 IAAEALTVRFAVRDTGVGIEEDKLGRLFQRF-SQADGSIRREFGGTGLGLAISKALVEAM 1094

Query: 769  GGHVSISS 776
            GG + + S
Sbjct: 1095 GGRIGVES 1102


>gi|165919133|ref|ZP_02219219.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 334]
 gi|165917145|gb|EDR35749.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 334]
          Length = 669

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 139/253 (54%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+ L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+
Sbjct: 267 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 323

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   ++ IS +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H
Sbjct: 324 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 383

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           +  +++K      + S V  D +R+ Q+   +LSNA+ F+ KG   +    LK       
Sbjct: 384 KKGMQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 443

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+VK+ G  + +    S+FNRF  +++ ++ +  GVGLGLSIV+  +   GG +S++S
Sbjct: 444 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 503

Query: 777 SDEGVTTINCRIP 789
                +   C IP
Sbjct: 504 EPGVGSEFTCIIP 516


>gi|144897852|emb|CAM74716.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 844

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 24/248 (9%)

Query: 541 TFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +F ++ D V     RAE A     EA R    +K+ F+  +S+ELR+PL  IIGF +L+K
Sbjct: 592 SFNDMADRVGESFQRAEEARLRAEEASR----MKSEFLASMSHELRTPLNGIIGFAELIK 647

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                + + +  +  E I  S + LLNLVN ILD+A ++AG M L   T+ +  L+ EV 
Sbjct: 648 DD---AADEEMRENAEIIEKSGSHLLNLVNTILDVAKIEAGAMTLARETVDIRTLVTEVA 704

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
               +      +  +V ++D    + V D  R+ Q+   +LSNA+ F+  G    + AA 
Sbjct: 705 AIHQSGADAKGLDFQVQLADDLPPALVTDPVRVRQVLHNLLSNAVKFTQAGRVHTVVAA- 763

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ------RRGVGLGLSIVESFINLH 768
           D    +  V ++G  I  D+   +F +F    H+G         G GLGL++    + L 
Sbjct: 764 DKDSVVIRVIDSGPGIALDLQDKIFEKF----HQGDAFLTRSHGGTGLGLTLARHLVELM 819

Query: 769 GGHVSISS 776
           GG +S+ S
Sbjct: 820 GGEMSLES 827


>gi|242280477|ref|YP_002992606.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123371|gb|ACS81067.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 791

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 12/248 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVE 611
           R L +  +   KA + K+ F+  +S+E+R+P+  I+G  DLL    LG+ L+ +Q  YVE
Sbjct: 266 RELEKSKDKSEKASQFKSQFLAMISHEIRTPMNAILGMGDLL----LGTELDPEQMGYVE 321

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S  +LL ++NDILD   +++G ++L       +  +  V +S+A   H  +I +  
Sbjct: 322 IFRGSGELLLKIINDILDFVQIESGQIELVPVPFDPSQDVQSVCKSVAHSAHARDIEVIC 381

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DF---IFSVKNN 726
            ++ G     V D  R+ Q+   I+SNA+ ++S G   +  +A ++G DF   +F+V++ 
Sbjct: 382 DVAQGVPAQVVGDPVRVRQVLMNIVSNAVKYTSSGEVEVCLSAEESGEDFERLLFTVRDT 441

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE   +S+F  FV       R   GVGLGL+       L  G +   S     +  
Sbjct: 442 GIGIPEGQRESLFEGFVQADGLASREYGGVGLGLAAASRLAVLMDGEIRFESESGKGSIF 501

Query: 785 NCRIPSKE 792
              IP K+
Sbjct: 502 YFSIPFKK 509


>gi|311742382|ref|ZP_07716191.1| sensor histidine kinase KdpD [Aeromicrobium marinum DSM 15272]
 gi|311314010|gb|EFQ83918.1| sensor histidine kinase KdpD [Aeromicrobium marinum DSM 15272]
          Length = 348

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 40/365 (10%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--------SPGTHIR-NIAATCSRY 490
           +D   +GV + GPDGR+   N   RSL +   + +         P   +  N    C+R 
Sbjct: 3   LDDFPDGVIIAGPDGRVAYVNDRIRSLARATGDEMLGMPLDEAMPFDDLNGNTWMACTRP 62

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           Y      D  +   T  +    S +G+  L++ +++       P        +    SVR
Sbjct: 63  Y------DGLSTRTTITEQSWYSPRGSEYLVTAALVRDR----PGGAVQRVIL----SVR 108

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           + RA   +       D  ++  V  V++ELRSPLT I GFT  L  SK    + +Q +++
Sbjct: 109 SARARNHR-------DRERSDLVATVAHELRSPLTGIKGFTATL-LSKWDQFSEEQRRFM 160

Query: 611 -EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E + A +  L  L+ ++LD A +DAG + L    + L+DL+  V + +     +    +
Sbjct: 161 LETVDADADRLSRLITELLDAARIDAGRLTLKRGPVRLDDLIGRVLRGVTAGGGDGRWAL 220

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFI-FSVKNNG 727
            +   G++     D  RL+Q+ + ++ NA        S  + +   D    +   + + G
Sbjct: 221 DL---GRVPVVWGDDDRLVQVVTNLVENAQRHGHGLASLAVAEEVVDGRPGVRLHLVDRG 277

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IPE+M   VF+RF  +   G   G GLG+ IV   ++ HGG V I  ++ G   I+  
Sbjct: 278 PGIPEEMRMRVFSRFWRS---GPGAGSGLGMYIVRGIVDQHGGRVDIDDAEGGGADISVW 334

Query: 788 IPSKE 792
           +P  E
Sbjct: 335 LPVNE 339


>gi|311235101|gb|ADP87955.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris
           RCH1]
          Length = 953

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 12/252 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    A++ K+ F+ ++S+E+R+PL  ++G   LL+ +    L 
Sbjct: 544 DITERKRFETELRQARDDAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLEDA---PLT 600

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S Q + +   S SS  LL ++NDILD   + +               L  V+ ++AT   
Sbjct: 601 SDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAK 660

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           + +IRI+  IS       + D  R  QI   ++ NA+ F+ +G+  I    L+     G 
Sbjct: 661 DKDIRIETDISPNVPPLLIGDVTRFRQILFNLVGNAVKFTQQGTVRISLHGLERHSPAGA 720

Query: 719 F--IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +  V+++G  IP+DM  +VF  F  V  ++R +  G GLGL IV S ++  GG ++I
Sbjct: 721 LRMLLMVEDSGIGIPQDMLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAI 780

Query: 775 SSSDEGVTTINC 786
            S +   TTI C
Sbjct: 781 DSEEGAGTTIAC 792


>gi|237721041|ref|ZP_04551522.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
 gi|229449876|gb|EEO55667.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
          Length = 885

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VT++    + W F  +++ ++  E +   L ++   TI++L  G+ V       K  N  
Sbjct: 344 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 396

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506
           FR +++  E            A     Y N+  G   +D +  I+               
Sbjct: 397 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTG 444

Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +  E K   G + +L    +      L +   +    ++T+    +R L    E  
Sbjct: 445 KGLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKA 504

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +D +K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL 
Sbjct: 505 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 561

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+ILDL+ +++G ++ ++    L++L  EV  +   +  +    +   SD  L     
Sbjct: 562 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESL-MIET 620

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+ Q+ S ++ NA+ F+ +GS        DN   +F V + G+ I  +    VF RF
Sbjct: 621 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLADN-QIVFHVTDTGTGIEPEKVGRVFERF 679

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  Q  G GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 680 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 724


>gi|226947571|ref|YP_002802662.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841036|gb|ACO83702.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 617

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I     +L   K  + +  K+ QY
Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + I SVK+ G  
Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGGGGNIYVTVKDFEDNIIISVKDTGIG 518

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPED  +++F+RFV      R  + G G+GL +V+SF+N+H G ++I S
Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTINIQS 567


>gi|221198638|ref|ZP_03571683.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221181089|gb|EEE13491.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 763

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ ++L+ S   +L   + Q ++ 
Sbjct: 374 RSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTL---RVQAIDA 430

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  L  +V DILD +++  G ++L+   + +  L  +V  +  T      I ++  
Sbjct: 431 IDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFE 490

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S         D +RL Q+ S ++SNA+ F+  G  V +  A D+   + +V + G  I  
Sbjct: 491 SRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAP 550

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +    VF+ F    ++    RRG+GLGLSIV   + LHGG V + S+     TT   ++P
Sbjct: 551 EFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 610

Query: 790 S 790
           +
Sbjct: 611 A 611


>gi|254428281|ref|ZP_05041988.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196194450|gb|EDX89409.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 641

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 130/248 (52%), Gaps = 16/248 (6%)

Query: 554 ALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+TE  +A R+A+   + K+ F+  +S+ELR+P+  ++G   LL+ +   + N +Q +Y 
Sbjct: 241 AMTELQQAHRQAETASQAKSDFLAMMSHELRTPMNGVLGMLQLLEET---AQNGEQQEYT 297

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E    S+  LL+++NDILD + ++AG M L+ S   L  LL     +         + ++
Sbjct: 298 EAALESTGHLLDVINDILDFSRIEAGRMDLDPSFFELQPLLQNCVATFRYVAESKGLYLR 357

Query: 671 VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI---FSVK 724
           +  D  L   V  +D  RL Q+ S ++SNA+ F+ +G   +  + R   GD++    +V 
Sbjct: 358 LEGDEVLAGKVTRSDPTRLRQVLSNLISNAVKFTQEGGVTVTVSVRPVRGDWLDLSIAVA 417

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG-- 780
           + G  IPE    S+F  F        RR  G GLGL+I      + GG++S+ S ++   
Sbjct: 418 DTGIGIPEAKRSSLFKAFSQIDSSTSRRFGGTGLGLAIARRLSEMLGGNLSVGSQEDAGS 477

Query: 781 VTTINCRI 788
           V T++ R+
Sbjct: 478 VFTLSLRL 485


>gi|158319155|ref|YP_001511662.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
 gi|158139354|gb|ABW17666.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
          Length = 463

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 8/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K +E+KN F+  VS+ELR+PLT+I G+   LK S     + K+  +  +  I   S  L 
Sbjct: 237 KKEELKNDFISSVSHELRTPLTSIKGWAITLKHSP----DDKEILADGLNIIETESDRLA 292

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N+V ++LD +   +G + L    + +N++++ +K+ +  +   +NI+ +VI++  +  F 
Sbjct: 293 NMVEELLDFSKFVSGKISLEKKEVNINEIIDHIKKQLTPRAMRDNIKFEVIAEEPMPIFC 352

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +D  RL Q+F  +L NA  F+  G +V L A+  +G+FIF++K+ G  I  +    V  +
Sbjct: 353 SDGNRLKQVFINVLDNAFKFTPAGGSVSLVASYRDGNFIFNIKDTGHGISAEDLPRVKEK 412

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F     R      G+GLSI +  I+L  G   I S     T I   +P  E
Sbjct: 413 FYKG--RTSLSQNGIGLSICDEIISLMKGTFEIKSQLNKGTEIIITLPLGE 461


>gi|46581448|ref|YP_012256.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450870|gb|AAS97516.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 955

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 12/252 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    A++ K+ F+ ++S+E+R+PL  ++G   LL+ +    L 
Sbjct: 546 DITERKRFETELRQARDDAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLEDA---PLT 602

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S Q + +   S SS  LL ++NDILD   + +               L  V+ ++AT   
Sbjct: 603 SDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAK 662

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           + +IRI+  IS       + D  R  QI   ++ NA+ F+ +G+  I    L+     G 
Sbjct: 663 DKDIRIETDISPNVPPLLIGDVTRFRQILFNLVGNAVKFTQQGTVRISLHGLERHSPAGA 722

Query: 719 F--IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +  V+++G  IP+DM  +VF  F  V  ++R +  G GLGL IV S ++  GG ++I
Sbjct: 723 LRMLLMVEDSGIGIPQDMLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAI 782

Query: 775 SSSDEGVTTINC 786
            S +   TTI C
Sbjct: 783 DSEEGAGTTIAC 794


>gi|83591667|ref|YP_425419.1| periplasmic sensor Signal transduction histidine kinase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83574581|gb|ABC21132.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 620

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 3/242 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL     +  +A+  K  F+ ++S+ELR+PL  IIGF+D+L     G+L  +Q  Y  
Sbjct: 364 EAALVAARRSSEEANRAKTLFLANMSHELRTPLNAIIGFSDMLANGIHGALADRQQDYAR 423

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ S+  LL+L+NDILD+A +++G   L+     L  ++   ++ +  ++ E  + +  
Sbjct: 424 DINLSALHLLDLINDILDVAKIESGGYLLHERPCNLAAIIRAAERMLGPRVREKGLVMDT 483

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSI 730
           +        +AD + + Q+   +LSNA+ F+ +G  + +     + G  +  V + G  I
Sbjct: 484 VCVDGEAWVMADERAMQQVLLNLLSNAVKFTPEGGRITVSLGLNEGGGMVLVVGDTGPGI 543

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +    V   F  V         G GLGL + ++ +  H G + + S     T ++  +
Sbjct: 544 PAEHLALVLEPFYQVGEVETRSHEGTGLGLPLAKALVEKHEGALRLDSQPGQGTRVSVTL 603

Query: 789 PS 790
           P+
Sbjct: 604 PA 605


>gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
 gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
          Length = 587

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1112

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 10/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+   AE  L +  E   KA   K+ F+ ++S+E+R+P++ IIG  D+L +    S +
Sbjct: 557 DITERKNAEIELYQAKEQAEKASMAKSEFLANMSHEIRTPISGIIGALDMLASE---SAD 613

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +   V+    S+  L  ++NDILDL+ V+AG + L +    L  L+  V    + +  
Sbjct: 614 QSRKDLVDMTLESARSLEQIINDILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQAR 673

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD 718
              I +KV +D +L  +V  D  RL Q+   ++SNA+ F+  G  +I   A D       
Sbjct: 674 NQGIALKVDADSRLPEYVRGDAHRLEQVLRNLVSNAVKFTQAGHVLIRVKAMDIDEHKAT 733

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F V+++G  I  D   S+F+ F      +  + +G GLGL+I +  + + GG + + S
Sbjct: 734 VEFQVEDSGEGISGDFLPSLFDSFTQADITYGKKHQGSGLGLAISQRLVQMMGGEIQVQS 793

Query: 777 S 777
           +
Sbjct: 794 T 794


>gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Enterobacter sp. 638]
 gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp.
           638]
          Length = 949

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 133/253 (52%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 442 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 501

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS++LL +++DILD + +++  +K+  S     +++N +  +   
Sbjct: 502 ---KGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPSEFSPREVMNHISANYMP 558

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    + +    +  +  + + D  RL Q+ S +LSNA+ F+  G  +IL  +R  GD+
Sbjct: 559 LVVRKQLGLYCFIEPDVPLTLLGDPMRLQQVISNLLSNAIKFTDVG-CIILHVSR-AGDY 616

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           +   +++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S+ +
Sbjct: 617 LSIRIRDTGVGIPAKEVVKLFDPFFQVGTGVQRNFQGTGLGLAICEQLISMMDGDISVDT 676

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 677 EPGMGSQFTIRIP 689


>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1209

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 38/280 (13%)

Query: 544 NVTDSVRAERALTEKNEAL--------------RKADEIKNSFVQHVSYELRSPLTNIIG 589
           +VT  +  E+ L +KN+ L              R+A   K+ F+ ++S+E+R+P+  I+G
Sbjct: 510 DVTALMEKEQDLEQKNQELMVLNEKYQEAARQAREASRAKSEFLANMSHEIRTPMNAIMG 569

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            T+L   ++L     +Q +Y+  I  SS  LL L+NDILD + ++AG + L Y    L +
Sbjct: 570 MTELAGNTEL---TPEQKEYLSIIQNSSESLLALLNDILDFSKIEAGKLDLEYIDFSLRE 626

Query: 650 LLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            ++    S+A   H+  +   ++V  D + G F  D  RL Q+   ++ NA+ F+ +G  
Sbjct: 627 TVHNAVYSVAMLAHQKGVELVVRVEPDMEDG-FKGDPDRLRQVLVNLVGNAIKFTQQGEV 685

Query: 708 -----------VILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
                      ++  AARD G       +F V + GS I  D  + +F  FV      +R
Sbjct: 686 QVEVRLAAAEEMLQHAARDEGYLSKLQILFRVVDTGSGIAWDKQEGIFEAFVQADGSSRR 745

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  G GLGLSI    + +  G + + S     +T +  +P
Sbjct: 746 KYGGTGLGLSISSRLVEMMKGRIWMQSEPGRGSTFSFVLP 785


>gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
 gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
          Length = 949

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRTD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|307151259|ref|YP_003886643.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981487|gb|ADN13368.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1067

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 128/244 (52%), Gaps = 14/244 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  +AE AL +  EA   A+  K+ F+  +S+ELR+PL  I+GFT +L  ++  +L 
Sbjct: 580 DITERKQAEEALKQAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQVL--ARNSALK 637

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++   +E IS S   LL+L+NDIL+++ ++AG    N S+  L  LL+ ++  +  +  
Sbjct: 638 EEEKTNLEIISRSGEHLLDLINDILEMSKIEAGRTTFNQSSFDLYRLLDSLEDMLRLRAE 697

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---------VILKAA 713
              +++   S   +  ++  D  +L Q+   ++ NA+ F+ +G           V L++ 
Sbjct: 698 AKGLQLIFDSASDVPQYIQTDEGKLRQVLINLIGNAIKFTDEGGVTLRVKSGGKVPLESP 757

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +      F V++ G  I  D   ++F  F  +   R   +G GLGL I + F+ L GG +
Sbjct: 758 K-MATITFEVEDTGPGIALDEIDNLFEAFGQTETGRKSNQGTGLGLPISKKFVELMGGEI 816

Query: 773 SISS 776
            +SS
Sbjct: 817 RVSS 820


>gi|153812169|ref|ZP_01964837.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174]
 gi|149831824|gb|EDM86910.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174]
          Length = 942

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 132/247 (53%), Gaps = 18/247 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  E  + A++ K +F+ H+S+++R+P+  IIGFT +   +   + + +    +E I 
Sbjct: 553 MAELAEHAQAANKAKTAFLSHMSHDMRTPMNAIIGFTGI---AMKNNPSDEVKNCLEKID 609

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATK--MHENNIRIKV 671
            SS  LL+L+ND+LDL  +++G  K+NY+  V  D+ N    ++  TK  +   +I  K+
Sbjct: 610 ESSEHLLSLINDVLDLTRIESG--KVNYNP-VPADVKNITDSALDITKGFLMNRDINFKI 666

Query: 672 I-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD----FIFSVK 724
              + K+ + +AD  RL  +   ILSNA+ F+  G T+  +A      GD      + + 
Sbjct: 667 QREEAKIPNVLADPARLRDVLVNILSNAVKFTPDGGTITFEARCQEKGGDGYINMRYRIS 726

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + E+  K VF  F    +  R Q  GVGLG++IV+ ++++ GG +S+ S     T
Sbjct: 727 DTGIGMSEEFTKEVFEEFAQEDSGVRTQYHGVGLGMAIVKKYVDMMGGTISVHSKKHEGT 786

Query: 783 TINCRIP 789
           T    IP
Sbjct: 787 TFTVDIP 793


>gi|148548955|ref|YP_001269057.1| histidine kinase [Pseudomonas putida F1]
 gi|148513013|gb|ABQ79873.1| histidine kinase [Pseudomonas putida F1]
          Length = 935

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 35/297 (11%)

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           CS Y+  ++G  L+                    LS S   Y   P+     +  F +++
Sbjct: 401 CSDYFESAEGRHLY--------------------LSCSPTRYKGEPV----LLCAFSDIS 436

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              + E AL +   A   A+E K  F+  +S+E+R+PL  ++G  +LL  +    L+++Q
Sbjct: 437 ARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRT---VLDAQQ 493

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I  SS+ LL L+ D+LD++ ++AG + L  S     DL+ EV Q  +       
Sbjct: 494 RDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKG 553

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720
           +++    D +L    + D  R+ QI + +LSNA+ F+  G  V+L+A   N D      +
Sbjct: 554 LQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGR-VVLRARLLNRDGERSCLL 612

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + V + G  I E     +F  F  +  H     G GLGL I +    L  G + + S
Sbjct: 613 WQVSDTGKGIAEQDQPFIFEPFYQTEGHSQVIPGTGLGLPICQRLTQLMNGQLRLVS 669


>gi|328545129|ref|YP_004305238.1| PAS domain protein [polymorphum gilvum SL003B-26A1]
 gi|326414871|gb|ADZ71934.1| PAS domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 1231

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 104/182 (57%), Gaps = 2/182 (1%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
            AE  LTE       A   K+ F+  +S+E+R+PL  IIGF++++   + G++ N +  +Y
Sbjct: 984  AEEELTEAKRQAETASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGAIGNERYKEY 1043

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++ I  S   +++LVND+LDL+ ++AG + L++S +  ND++ E    +  + +   + I
Sbjct: 1044 LKDIRTSGAHIMSLVNDLLDLSKIEAGKLDLSFSAVSANDVVRECVALMQPQANRERVII 1103

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728
            +      + S VAD + L QI   +LSNA+ F+  G  VI+  A   NG+ +  V++ G+
Sbjct: 1104 RASLPATVPSVVADPRSLRQIVLNLLSNAIKFNRSGGQVIVSTALEPNGEVVLRVRDTGT 1163

Query: 729  SI 730
             +
Sbjct: 1164 GM 1165


>gi|326204683|ref|ZP_08194539.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985250|gb|EGD46090.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 598

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 5/232 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           ++RK ++I+  FV +V++EL++PLT+I GF + LK   +    +   ++++ I   +  L
Sbjct: 368 SVRKLEQIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIED-TTVAVKFLDIIDIEAERL 426

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+NDIL L+ ++A     +   I L  +++EV   + +   + NI ++V +       
Sbjct: 427 YTLINDILQLSEIEAMRKDDSVMEIDLRQIIDEVVLILKSSADKKNILLEVSTVPSHIQI 486

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +A R R+ Q+   ++ NA+ ++ +   + +KA ++NG+ + S+K+ G  IPE     +F 
Sbjct: 487 IASRNRIKQMLINLIDNAIKYNVENGKICVKAEKNNGNTVISIKDTGIGIPEMHHSRIFE 546

Query: 741 RFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF     +G+ R   G GLGLSIV+  INL+ G + I S     T    ++P
Sbjct: 547 RFYR-VDKGRSRNMGGTGLGLSIVKHIINLYSGDIHIISEPGKGTEFIVKLP 597


>gi|253572402|ref|ZP_04849805.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838177|gb|EES66265.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 869

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 6/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G    +  Q++
Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEIGQFI 687

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 688 ATINKNCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLL 747

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--IFSVKNNGS 728
            + D +    V D  RL Q+ + +++NA  F++ GS        ++ ++  IF V++ G 
Sbjct: 748 RMPDNEKKYLVTDNVRLQQVVNNLINNAAKFTTYGSITFGYEEDEDPEYTRIF-VEDTGV 806

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I E+  + +F RF    +  Q  G GLGLSI ++ +    G + ++S     T    RI
Sbjct: 807 GISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRI 864

Query: 789 PS 790
           P+
Sbjct: 865 PN 866


>gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
 gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
          Length = 949

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|332526490|ref|ZP_08402602.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332110758|gb|EGJ10935.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 669

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 166/358 (46%), Gaps = 32/358 (8%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           E +  +++G  V   DGRI + NPA    W        P   +  + AT    +     W
Sbjct: 230 EVLRRMADGAGVVDADGRIVVCNPA----WAAMLGAAGPAQAL-GLPATA---WLAEPSW 281

Query: 498 DLFAAIIT---SFDDE----RKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           D  AA +    +   E    R++  GTL    S +V   +    P A+  L   +V+   
Sbjct: 282 DTLAARLAQAGTLPAEDLSLRRADGGTLATEASFAVFARADAGAP-ARVQLVLRDVSARR 340

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQ 608
             ER L    EA   A   K+ F+ ++S+E+R+P+  I+G T L L+T     L+ +Q  
Sbjct: 341 ETERTLVAAREAAEAATRAKSDFLANMSHEIRTPMNAILGMTALALRTE----LDPRQRD 396

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+E   A++  LL +VN ILD + ++AG ++L +    L+ +L+ V   +A + H+  + 
Sbjct: 397 YLEKTRAAAQSLLGIVNVILDFSKIEAGRLELEHDEFELDAVLDGVAAIVALQAHDRGLG 456

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFS 722
             + +S+      V D  RL Q+   +  NA+ FS +G  ++   A D  D       F 
Sbjct: 457 FLLDVSEQVPRRLVGDALRLSQVLVNLCGNAVKFSERGEVLVRVEALDAADPHLQRLRFV 516

Query: 723 VKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           V + G  + P+D+ + +F  F        RR  G GLGL+I    +   GG +++ SS
Sbjct: 517 VHDEGIGLSPQDL-ERLFRPFSQVDASTTRRYGGTGLGLAISRQLVQAMGGDIAVRSS 573


>gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1322

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 126/232 (54%), Gaps = 13/232 (5%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L +  +A   A+  K+ F+ ++S+ELR+PL  I+GFT ++  S+  SLN +   +++ I+
Sbjct: 834  LEKARDAAESANRAKSEFLANMSHELRTPLNAIMGFTQVM--SRDISLNQEHQSHLDIIN 891

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S   LL L+ND+L+++ ++AG +KLN S+  L  LL  ++  +  K     + +     
Sbjct: 892  RSGQHLLELINDVLEMSKIEAGRIKLNTSSFDLYYLLTNLEDLLRLKADFKELTLIFDCA 951

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------IFSVKN 725
              +  ++ +D  +L Q+   +L NA+ F+ KG   +     +N D+        +F V++
Sbjct: 952  QDVPQYITSDEVKLRQVLLNLLGNAIKFTQKGKVTLRVRKINNKDYGDPISTSLLFEVED 1011

Query: 726  NGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             G+ I PED+ K +F  FV   +     G GLGL+I + F+ L  G +++ S
Sbjct: 1012 TGTGIAPEDI-KQLFTPFVQARNTDAHEGTGLGLTISQKFVKLMQGEITVES 1062


>gi|218887412|ref|YP_002436733.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758366|gb|ACL09265.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1162

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 40/305 (13%)

Query: 522 SDSVLEYSIIPL---PNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           S  V ++S  PL   P+ +  +    V+VT    AE AL  +  A   A+  K+ F+ ++
Sbjct: 627 SARVWDFSSAPLGSLPDGRRAVIRMAVDVTGRKEAEAALLREKGAAEAANLAKSEFLANM 686

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL   +G   LL+T+   +L+ +Q  Y+     S+  L  L++D+LDL+ V+AG
Sbjct: 687 SHEIRTPLNGSLGMLQLLQTT---TLDEEQQDYLTSAITSARRLTQLLSDVLDLSRVEAG 743

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            + L  +   L  +   ++        E  + + +  D +L +  V D  RL QI   ++
Sbjct: 744 RLALRAAPFALEGVAGSIRDIFLLPAREKELELDIRLDPRLPARLVGDEARLRQIAFNLV 803

Query: 696 SNAMDFSSKGSTVI-------LKAARDNGD----------------------FIFSVKNN 726
            NA+ F+  GS  +         AAR  G+                       +  V++ 
Sbjct: 804 GNAIKFTDTGSVTVELTPLGLPPAARPAGNAAGDATSGPAGNTPAHRPAQLRLLLEVRDT 863

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE   + +F  F  +  +H  +  G GLGLSIV   + L GG +S+ S+    T I
Sbjct: 864 GIGIPESHLERIFEPFSQLDGSHVRRHGGAGLGLSIVRRLVALMGGELSLESTPGTGTNI 923

Query: 785 NCRIP 789
              +P
Sbjct: 924 FISLP 928


>gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4]
          Length = 527

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 164/355 (46%), Gaps = 23/355 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I+++  G+ +  P G + L N  F+ L++ +     P  +++       RY+      D+
Sbjct: 186 IENMGSGLLLIDPRGFVVLMNKTFKELFEVD-----PSNYLKK------RYHEAIQHEDI 234

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +   F  E K  +  L  L      + +   P        + ++D  +    +    
Sbjct: 235 IKVVEEVFMTEEKVRKQLLLPLHLERKHFEVYGAP-------IIGISDEWKGILLVFHDI 287

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             L+K ++++  FV +VS+EL++P+T+I GF++ L    L   ++ +  ++  +   S  
Sbjct: 288 TELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGALEDRDTLEY-FLNIMLTESDR 346

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+ D+LDL+ ++    KL+ ST  L+ LL EV   +  K  E  I+++     +L +
Sbjct: 347 LQSLIQDLLDLSKLEQHGFKLDVSTFDLSRLLEEVVLMLKGKAEEKEIQLQFEPIPEL-T 405

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R  Q+F  +++NA+ ++  G  V +    +  +    V++NG  I       +F
Sbjct: 406 LEGDMNRFKQVFINLINNAISYTGPGGHVKVFVKEERDEITIKVQDNGVGIAASELPRIF 465

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  +  A      G GLGL+IV+  +  H G + + SS EGV T      SKE
Sbjct: 466 ERFYRIDKARSRNSGGTGLGLAIVKHIVEAHHGEIDVESS-EGVGTTFIVKVSKE 519


>gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 826

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 19/240 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL E ++A + A+  K+ F+  +S+E+R+P+  +IG TDLLK +    L+  Q  +VE 
Sbjct: 294 QALLESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTH---LDPHQQDFVET 350

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-V 671
           I  S   LLN++NDILD + +++G ++L      ++  + E    + +K     + +  +
Sbjct: 351 IRTSGESLLNIINDILDFSKIESGKLELELHPFPISTCVEEALDIVNSKATAKGLELAYL 410

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------------D 718
           I  G       D  RL QI   +L NA+ F++ G  ++  +ARD               +
Sbjct: 411 IEPGTPNHIQGDANRLRQILVNLLGNAVKFTADGEVIVTISARDVATAEMTPEVPLSLHE 470

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F VK+ G  I  +  + +F  F  + ++   +  G GLGL+I +    L GG + + S
Sbjct: 471 LLFEVKDTGIGIAPEHQQKLFQSFCQLDSSITREYGGTGLGLAISKQLCELMGGTIWVES 530


>gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli E24377A]
 gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E24377A]
          Length = 949

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +  +D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNSDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|197118872|ref|YP_002139299.1| sensor histidine kinase response receiver domain-containing protein
           [Geobacter bemidjiensis Bem]
 gi|197088232|gb|ACH39503.1| sensor histidine kinase response receiver domain protein, HAMP
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 1362

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 3/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + L  + + L +A  +K+ F+ ++S+ELR+PL +++  + +L       L   +  Y
Sbjct: 567 RHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQGGSRLTEDEKGY 626

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +   LL+L+NDILDLA +++G  ++   T+ L  +  EV   ++    E  I I
Sbjct: 627 LSIIERNGKHLLSLINDILDLAKIESGRQEVYLETVSLQKVTAEVVDGLSVLAREKGIAI 686

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + +   L + V D +RL Q+   ++ NA+ F+++G+ V ++   +  +F+  V++ G  
Sbjct: 687 SLEAPEALPTAVIDVKRLRQMLQNLIGNAVKFTAEGA-VTVRLGAEGEEFLVEVEDTGIG 745

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I     +++F+ F        R   G GLGL+IV+    L GG VS+ S     +    R
Sbjct: 746 IAPQYLETIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSVRSELGKGSVFTLR 805

Query: 788 IP 789
           +P
Sbjct: 806 LP 807


>gi|42524991|ref|NP_970371.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39577202|emb|CAE81025.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 688

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 140/288 (48%), Gaps = 14/288 (4%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEI 568
           E+  L G L L++ ++  +S   +   Q+++  +++  S  A  + L E+ + L  A   
Sbjct: 239 EKNQLFGLLLLMNKALRHFSAEEVRFVQSLVNTLSIAMSRNALHKELEERIQQLHTAHRK 298

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL---LNLVN 625
           KN F+  +S+ELR+PL  I G  DLLK S     + K  +Y + + A    L   + LV+
Sbjct: 299 KNDFLATLSHELRTPLNIIKGGLDLLKGS-----DPKSREYHDALDAIERNLNHEIQLVS 353

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D L+++ +  G  KLN   +V+ +L+  V +S+ +  H  NI  ++         V D  
Sbjct: 354 DTLEISRITTGKTKLNLKKVVVQELIQSVMESLESAAHAKNISAQLTCSEAATQAVVDPD 413

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R  QI   +LSN++ F+  G  + +        F  SV++ G  I  +    VF +F   
Sbjct: 414 RFRQILWNLLSNSIKFTPPGGRLHVTCETHESQFSVSVQDTGQGIESENLPYVFEKFWQE 473

Query: 746 AHRGQRRGVG--LGLSIVESFINLHGGHVSISSS--DEGVTTINCRIP 789
                R+ +G  LGLSI +    LHGG + + S   D+G TT   ++P
Sbjct: 474 DSGMNRKRMGLGLGLSIAKHMTELHGGSIEVQSPGKDQG-TTFRIQLP 520


>gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
 gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
          Length = 574

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 158/335 (47%), Gaps = 42/335 (12%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           W+T      P   +  +A   +R +N    +DL A + T  +DE   L  +L  L + V 
Sbjct: 265 WRTSRAIAEPVITVTQVAEQVARKHN----FDLRAPVTT--EDEIGLLAKSLNRLIERVS 318

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E +                       + L +  E    A + K+ F+ +VS+ELR+PL  
Sbjct: 319 ERT-----------------------KELQQAKELAEAASKAKSVFLANVSHELRTPLNA 355

Query: 587 IIGFTDLLK--TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           +IG + LL+   + LG L++     +E I+++   LL+L+N+ILDL+ ++AG M L   T
Sbjct: 356 VIGLSQLLEDDATDLG-LSADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTLYPET 414

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             +  L+N V  ++   + +N   ++V  D +LG+  AD+ R+ Q+   +LSNA  F++ 
Sbjct: 415 FEIATLINNVVLTVKPAIEKNANVLEVHFDEQLGTMYADQTRMRQVLLNLLSNASKFTTN 474

Query: 705 GS-TVILKAARDN-------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           G  T+ +K  ++        G   F+V + G  +     + +F  F        ++  G 
Sbjct: 475 GKVTLTVKREKEELRLDAPLGMITFTVTDTGIGMSNRQQQQLFQPFTQGDTSTTKKYGGT 534

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I   F  + GG + + S     +T   R+P
Sbjct: 535 GLGLAISRHFCQMMGGEIIVKSQPGLGSTFTIRLP 569


>gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 950

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 129/252 (51%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 443 VLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 502

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              S     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +  +
Sbjct: 503 ---SGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLS 559

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL A    G  
Sbjct: 560 LVVKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVAQGYL 618

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  IP      +F+ F    +  QR  +G GLGL+I E  IN+  G + + S 
Sbjct: 619 AFRVRDTGVGIPAKELPRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSE 678

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 679 PGMGSQFIVRIP 690


>gi|262275446|ref|ZP_06053256.1| putative sensory box sensor histidine kinase/response regulator
           [Grimontia hollisae CIP 101886]
 gi|262220691|gb|EEY72006.1| putative sensory box sensor histidine kinase/response regulator
           [Grimontia hollisae CIP 101886]
          Length = 877

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 133/250 (53%), Gaps = 11/250 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N + +L   +V + +  E+AL    +   +A   K+ F+ ++S+E+R+P+  IIG +++L
Sbjct: 345 NDRYVLIVRDVHEQLEFEKALKHAADTAHQATRAKSQFLANMSHEIRTPMNGIIGVSEML 404

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + S   SL  +Q  +V+ I +S+  LL L+NDILD + ++   +KL+  T  L  ++ E 
Sbjct: 405 RES---SLPKEQKGFVDIIYSSAKSLLQLINDILDFSKLEEKKLKLSEETFCLRTMVEET 461

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712
              +A       + + V     + + V +D  RL Q+F+ +L NA+ F+  G   I ++A
Sbjct: 462 ASMVAISASRKELLVVVDIPPDINTLVISDELRLRQVFNNLLGNAVKFTEHGYIRISVRA 521

Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
               GD    +  ++++ G  IPED    +   F  V+++   + +G GLGLSI +S ++
Sbjct: 522 EPKPGDTSSTYTLTIEDTGIGIPEDKLSDITKAFEQVNSSTSRRYKGTGLGLSITKSLLS 581

Query: 767 LHGGHVSISS 776
           L    + + S
Sbjct: 582 LFNSELEVVS 591


>gi|218709788|ref|YP_002417409.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32]
 gi|218322807|emb|CAV18984.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32]
          Length = 565

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 135/260 (51%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTD 592
           +Q +L    +  ++  + A+    E+ ++A+E + +   FV  +++ELR+PL  ++G  +
Sbjct: 169 SQLLLVTDLICSALTHQLAINRNIESRKRAEESERATRDFVAMINHELRTPLNGLLGSAE 228

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+  ++L   ++ Q + V  +S S   L  ++ND+LD + ++AG+++L   T  L DL N
Sbjct: 229 LISDTEL---SNSQREIVNNLSQSGEFLRTIINDLLDYSKINAGMLELIPKTFALQDLKN 285

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +      +  E  I+  V ++DG    F  D +R+ Q+F  ++ NA+ F+ +G  V ++
Sbjct: 286 TIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVNLIGNAIKFTDQGH-VSVE 344

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               N  FIFSV+++G  I +   K++F  F    +   R   G GLGL+I      L  
Sbjct: 345 IKWLNDQFIFSVEDSGVGIAQSAIKTLFEPFTQADNSSSRNYEGTGLGLAICRKLAALMR 404

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + +SS     TT    +P
Sbjct: 405 GDIEVSSIVGSGTTFTISLP 424


>gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701]
 gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701]
          Length = 549

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 33/286 (11%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRK------------------ADEIKNSFVQH 575
           P+   +  F ++T+  RA+  +T+  + L +                  A      F+  
Sbjct: 101 PDPSLVFVFRDLTEITRAQDQITKARDTLEQDVAARTLELQLARDEALAATGAMGQFLST 160

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  +IG +DLL  +   SL+ +Q + V  I++S+ +LL L+NDILDL+ ++A
Sbjct: 161 ISHEIRTPLNAVIGMSDLLLDT---SLDGQQQELVHTINSSAELLLRLINDILDLSKIEA 217

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKI 694
             MK++  T  L  L+ +  + +   +    + ++   SD    + + D  R+ QI   +
Sbjct: 218 RKMKISSETFSLRSLVLDCCRMMDAAVRAKRLELRCSFSDDPPDALIGDGLRIRQIVLNL 277

Query: 695 LSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SN 745
           L+NA+ F+S GS  +      L ++    D +  V + G+ I ED    +F  F    + 
Sbjct: 278 LNNAIKFTSHGSVDVKIGWRPLTSSAIELDLV--VADTGTGISEDFLSKIFQDFTQEHNQ 335

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           AH     G GLGL+I +    L GG +   S     +  + R+P K
Sbjct: 336 AHASHHHGTGLGLAICDRLCRLMGGSIEAVSQLGQGSRFHVRLPLK 381


>gi|116493791|ref|YP_805525.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
 gi|227534582|ref|ZP_03964631.1| sensor histidine kinase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239631046|ref|ZP_04674077.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301065367|ref|YP_003787390.1| signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|116103941|gb|ABJ69083.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
 gi|227187831|gb|EEI67898.1| sensor histidine kinase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239527329|gb|EEQ66330.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300437774|gb|ADK17540.1| Signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|327381060|gb|AEA52536.1| two-component sensor histidine kinase [Lactobacillus casei LC2W]
 gi|327384235|gb|AEA55709.1| two-component sensor histidine kinase [Lactobacillus casei BD-II]
          Length = 396

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S   +  +Y       +  +  
Sbjct: 148 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDHQYRS-EEELLKYTHTAYLKAKQMKV 206

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV D+ +   V +   KLN     +  +L ++  S   + H+ ++RI V  +       A
Sbjct: 207 LVEDLFEYTKVKSTTTKLNPVRFNMIAMLEQLAASFELEAHKKHMRILVSGEPDPLMMEA 266

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L ++F+ ++ NA+ +   G  + L A R   + +  V N+G+ IP D    +F+RF
Sbjct: 267 DTEKLGRVFNNLIVNALKYGQGGRHIFLDAQRIGSEVVVKVSNDGAQIPNDALSQLFDRF 326

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +   +  G GLGL+I +S I LHGG++   SS E +T+    +P K
Sbjct: 327 YRVEESRSQETGGTGLGLAIAQSIIALHGGYIYADSSPE-ITSFVIHLPLK 376


>gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227]
          Length = 880

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 370 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 429

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 430 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 486

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 487 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 544

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 545 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 604

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 605 VDSEPGMGSQFTVRIP 620


>gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74]
          Length = 933

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|258516894|ref|YP_003193116.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780599|gb|ACV64493.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1155

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 17/255 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           + R + EK   L  + + K+ F+ ++S+ELR+PL +++  + LL  +K  +L  KQ ++ 
Sbjct: 446 SRRMIEEKARDLELSGKYKSEFLANMSHELRTPLNSLLILSRLLYENKESNLTEKQVEFA 505

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S + LL L+NDILDL+ ++AG + L    + + DL   V++++     E  +   
Sbjct: 506 RTIHSSGSDLLELINDILDLSKIEAGKVDLFIQDLDIADLAGSVERNLRHMAEEKGLTFD 565

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------- 718
           +     + S +  DRQRL QI   +LSNA+ F+S+GS + LK  R   +           
Sbjct: 566 IELSQSMPSIIRTDRQRLEQIIKNLLSNAIKFTSQGS-ICLKIGRPYSEAKLMRSDLDIR 624

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F+V + G  I  D  K +F  F        R+  G GLGLSI    +   GG + +
Sbjct: 625 NTVAFTVSDTGIGIAADKMKLIFEPFQQADGTTSRQYGGTGLGLSISRELVRCLGGEIQL 684

Query: 775 SSSDEGVTTINCRIP 789
            S +   +T    +P
Sbjct: 685 ESREGYGSTFTIYLP 699


>gi|120601381|ref|YP_965781.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561610|gb|ABM27354.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 955

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 12/252 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    A++ K+ F+ ++S+E+R+PL  ++G   LL+ +    L 
Sbjct: 546 DITERKRFETELRQARDDAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLEDA---PLT 602

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S Q + +   S SS  LL ++NDILD   + +               L  V+ ++AT   
Sbjct: 603 SDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAK 662

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           + +IRI+  IS       + D  R  QI   ++ NA+ F+ +G+  I    L+     G 
Sbjct: 663 DKDIRIETDISPNVPPLLIGDVTRFRQILFNLVGNAVKFTQQGTVRISLHGLERHSPAGA 722

Query: 719 F--IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +  V+++G  IP+DM  +VF  F  V  ++R +  G GLGL IV S ++  GG ++I
Sbjct: 723 LRMLLMVEDSGIGIPQDMLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAI 782

Query: 775 SSSDEGVTTINC 786
            S +   TTI C
Sbjct: 783 DSEEGAGTTIAC 794


>gi|146278988|ref|YP_001169147.1| PAS domain-containing protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557229|gb|ABP71842.1| PAS domain containing protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 520

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 24/296 (8%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQKAI 237
           L  + L   +   +        ++W      +++WAN +Y     K+    E + +    
Sbjct: 145 LAQRALVEELDQLRATVSQAPLMMWRESGRAEVIWANAAYLLEAAKRLDPGEDLSWPLP- 203

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID--- 294
               +LF+   +      +  ++   ET      G  + +++V      G    A+    
Sbjct: 204 ----RLFE---RAATAQGAPGQRQKLET-----QGAARWFELVGFAEGEGRLLFALPADA 251

Query: 295 -VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
            V  E ++ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS  
Sbjct: 252 AVQAEASLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTSLPPDMLALQPSLF 311

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYK--SSETHKDTWHLPNGQTLHVIVTSNPRGG 411
             LE LR    +PE  ++ +W+  I  + K  SS  + +TW LP+GQT  VI   +P G 
Sbjct: 312 SFLEALRDRQMIPEPKDYPSWRRQILELEKAASSGLYTETWSLPSGQTYRVIGRPHPNGA 371

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
              MFE+++ ++    +Y   +++    +D + E +AVF   G + ++N A+ +LW
Sbjct: 372 LALMFEDISTEMSRTRRYRADLELGQAVVDAMDEAIAVFSQAGELVMTNAAYGALW 427


>gi|319900586|ref|YP_004160314.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415617|gb|ADV42728.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 657

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 13/236 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + D  R +++  E   A  KA+E   +K++F+ ++S+E+R+PL +I+GF  +L+    G+
Sbjct: 403 IEDKKRLQQSEHELRLAKEKAEEGNRLKSAFISNMSHEIRTPLNSIVGFATILEEETRGN 462

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N K  +YV  IS +S +LL L+NDILDL+ +++G    N+  +   DL+      +A  
Sbjct: 463 ENLK--EYVNIISYNSDLLLKLINDILDLSRLESGRQNFNFQIL---DLVPHCANIVAGF 517

Query: 662 MHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
                  IK+       + +A  D  RL Q+   ++ NA+ F+ KGS ++ +K    + +
Sbjct: 518 QTNIAKGIKLGFKHSTPTIIAETDTTRLQQVLINLIGNAVKFTQKGSIILEVKPNNVSQE 577

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +IFSV + G  IP +  K VF RF  N      +G GLGLSI +  I   GG + I
Sbjct: 578 WIFSVTDTGCGIPPEKQKVVFERF--NKLDEYAQGTGLGLSICQITIENLGGRIWI 631


>gi|29346941|ref|NP_810444.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386399|ref|ZP_06995955.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|29338839|gb|AAO76638.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260776|gb|EFI03644.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 869

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 6/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G    +  Q++
Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEIGQFI 687

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 688 ATINKNCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLL 747

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--IFSVKNNGS 728
            + D +    V D  RL Q+ + +++NA  F++ GS        ++ ++  IF V++ G 
Sbjct: 748 RMPDNEKKYLVTDNVRLQQVVNNLINNAAKFTTYGSITFGYEEDEDPEYTRIF-VEDTGV 806

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I E+  + +F RF    +  Q  G GLGLSI ++ +    G + ++S     T    RI
Sbjct: 807 GISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRI 864

Query: 789 PS 790
           P+
Sbjct: 865 PN 866


>gi|22299374|ref|NP_682621.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
 gi|22295557|dbj|BAC09383.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
          Length = 714

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 128/244 (52%), Gaps = 7/244 (2%)

Query: 549 VRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           VRA  A L +K + L + + IK+ F+  VS+ELR+P+ N+     +LK     + + +Q 
Sbjct: 467 VRARTAELEQKMQELERLNAIKDDFLSTVSHELRTPMANMKMAIHMLKQF---ATDDRQK 523

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y++ ++        L+ND+LDL  ++AG  ++    I L+  L  V +    +M +   
Sbjct: 524 RYLDILANECNRETELINDLLDLQRLEAGRSQIQQEVIDLDSWLPTVLEPFRNRMQQRQQ 583

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            ++V+    L   +++R  L +I +++++NA  +S  G+ ++++     GD +    +N 
Sbjct: 584 SLEVLRPATLPPLLSNRHALARILAELINNACKYSPAGAQIVVRFDPIGGDRLQIQVSNP 643

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           S IP +    +F +F  + NA   Q+ G GLGL++ +  +    G +S  S+  G+TT  
Sbjct: 644 SEIPSEELPRIFEKFYRIPNADPWQQGGTGLGLALTQKLVEQLQGDISADSA-AGMTTFT 702

Query: 786 CRIP 789
             +P
Sbjct: 703 LTLP 706


>gi|253701838|ref|YP_003023027.1| PAS sensor protein [Geobacter sp. M21]
 gi|251776688|gb|ACT19269.1| PAS sensor protein [Geobacter sp. M21]
          Length = 1323

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A++ K++F+  +S+ELR+PL  I+G+  +LK     +L   Q Q +E +      LL+L+
Sbjct: 861  ANQAKSAFLSSMSHELRTPLNAILGYAQILKRQD--NLTDTQRQQLEIVRGCGEHLLSLI 918

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
            ND+LD+  ++A  M++   +  L+ LL +V      K  E ++  +      L   V  D
Sbjct: 919  NDVLDMGKIEAQKMEIEALSFDLSALLGQVFSIAKVKADEKDLGFRYEELTSLPRAVRGD 978

Query: 684  RQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            +++L Q+   +LSNA+ ++ +G  TV +     +G F+  + + G  I  D    +F  F
Sbjct: 979  QRKLKQVLLNLLSNAVKYTRRGRVTVRVDYELSSGTFVCEITDTGIGIAPDKLNIIFEPF 1038

Query: 743  VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            V  A  GQ R G GLGLSI    + L  G V++ S     +T    +P  E
Sbjct: 1039 VQLADAGQVREGTGLGLSITRRLVTLMQGEVAVESEPGFGSTFRVELPLPE 1089


>gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
 gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
          Length = 848

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 129/252 (51%), Gaps = 22/252 (8%)

Query: 550 RAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R ++   E + AL KA   D  K+ F+  +S+E+R+P+  ++G  +LL  +    L+++Q
Sbjct: 256 RLQQKTKETDLALTKAKAADRAKSEFLATMSHEIRTPMNGVLGMAELLTRT---DLDTRQ 312

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             + + I  S   LL ++NDILD + +DAG M L      L D   +V   +++++ E +
Sbjct: 313 RTFTDVILKSGNALLEIINDILDFSKIDAGQMVLAPKPFSLVDTAEDVATLMSSRVVEKD 372

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD--- 718
           I + V I+ G     + D  R+ QI + ++ NA+ F+ +G  ++    +D    +G+   
Sbjct: 373 IELAVRIAPGLPDQLIGDPGRVRQILTNLVGNAVKFTEQGHVMVEINWKDVEPEDGEGAS 432

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                   SV + G  IP D   +VF++F  V  +   +  G GLGL+I    + L GG 
Sbjct: 433 SRRLALSISVSDTGIGIPPDKIDAVFDKFSQVDGSSTRKHEGTGLGLAIATRLVELMGGQ 492

Query: 772 VSISSS-DEGVT 782
           + + S+  EG T
Sbjct: 493 IKLESTVGEGST 504


>gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii Sb227]
 gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83]
 gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74]
          Length = 949

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|189426162|ref|YP_001953339.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422421|gb|ACD96819.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 898

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 141/256 (55%), Gaps = 11/256 (4%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y+  P P    ++ F ++T+  ++++ L E  +A   A++ K+ F+ ++S+E+R+P+  +
Sbjct: 486 YAFCPEPGLFAVV-FNDITERFKSQQELAEAKDAAEAANQAKSDFLANMSHEIRTPMNGV 544

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G T LL+ ++   L ++Q +Y++ I  S+  LL+L+NDILDL+ +++G ++L ++   L
Sbjct: 545 VGLTQLLRFTE---LTTEQVEYLDSIETSADNLLSLINDILDLSKIESGKVELEFTDFSL 601

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
              + ++  +  +++ E  ++IK      L   V  D+ R+ Q+F  +L NA+ F+ +G+
Sbjct: 602 RKAIQDIIITQKSRIFEKGLQIKQEIAADLPELVNGDQLRVKQVFINLLGNAIKFTERGT 661

Query: 707 TV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
                 IL+   +      +V + G  + ++  + +F+ F        RR  G GLGLSI
Sbjct: 662 ITIAVSILERESNRALIRITVSDTGIGMSQETLQKIFDPFAQADSSTTRRFGGTGLGLSI 721

Query: 761 VESFINLHGGHVSISS 776
                 L GG +++ S
Sbjct: 722 CRKLAELMGGAITVES 737


>gi|16264090|ref|NP_436882.1| putative sensory histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|15140215|emb|CAC48742.1| putative two-component sensor histidine kinase [Sinorhizobium
           meliloti 1021]
          Length = 917

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 131/265 (49%), Gaps = 7/265 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +P+  T+  + ++T   + +  L         A+E K+ F+  +S+ELR+PL  IIG+++
Sbjct: 385 IPDGGTVAVYTDITQLKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSE 444

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L        + +    ++ I+++   LL+L+NDILDL+ ++A  M++   T  + DLL 
Sbjct: 445 MLIEEARDHEDEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLR 504

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +V  ++A  M  N        +  LG   +D+ +L Q    +LSNA  F++ G  V L+ 
Sbjct: 505 DVAATVAPLMARNGNEFTQDFEADLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRV 563

Query: 713 AR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            R    D    +F V + G  +  +  + +FN F        R   G GLGLSI  SF  
Sbjct: 564 RREQRPDRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCR 623

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           + GG V++ S     +     +P++
Sbjct: 624 MIGGVVTVESEVGKGSVFTMEVPAQ 648


>gi|120555598|ref|YP_959949.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120325447|gb|ABM19762.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 784

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 130/235 (55%), Gaps = 14/235 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E++EA+R A+  KN F+ +VS+ELR PL +++G+ +LL  + L   + +Q +YV  +  +
Sbjct: 246 ERDEAIR-ANHAKNQFLANVSHELRIPLQSVLGYANLLTDTPL---DQEQREYVNTLLNA 301

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L +++ND+LD+++++AG ++L      L + LN++   + ++  E  + ++V  D  
Sbjct: 302 SESLSSIINDLLDISSMEAGKLELEAIPFDLRETLNDLIHMLGSRAREKGLALEVRVDEN 361

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSI- 730
           L  +   D  R+ Q+   +LSNA+ F+  G    S  IL           +V++ G  I 
Sbjct: 362 LPWALTGDPVRIRQVLLNLLSNAIKFTDSGHVLISIEILGRKEGKVRLRLAVEDTGVGIN 421

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           PED+   V+  +V    R QR+  G GLGL+I    ++L GG + + S   EG T
Sbjct: 422 PEDI-PLVYEPYVQLGQRFQRQLPGAGLGLTICRQLVDLMGGSMDLESRPGEGST 475


>gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 110-3]
          Length = 933

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW]
 gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW]
          Length = 1057

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 17/235 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYI 613
           L    +A   A   K+ F+  +S+ELR+P+T +IG  DLL    LG+ + S Q +Y+E +
Sbjct: 667 LQTARDAAEAASRAKSRFLAVMSHELRTPMTGVIGMIDLL----LGTTVTSDQRRYLETL 722

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S+  LL ++NDILD + ++AG + +    + L  LL++V    A    +  + ++V  
Sbjct: 723 HSSADALLVVLNDILDFSKIEAGQLVIEAIPVRLQALLDDVIDLFAPAASQKGVELRVRQ 782

Query: 674 DGK------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI--FSV 723
             +            D  RL Q+   ++ NA+ F+  GS  +   A+  D G ++  F V
Sbjct: 783 PERRQKNRLPKELTGDPTRLRQVLMNLVGNAVKFTPAGSIELRAEAQREDGGTWLLRFEV 842

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++ G  IP D+   +F  F        RR  G GLGL+I +  + + GG + + S
Sbjct: 843 EDTGIGIPPDVVPMLFESFTQADASTTRRFGGTGLGLAICKRLVTMMGGEIGVRS 897


>gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 933

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L]
 gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L]
          Length = 587

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227]
          Length = 933

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71]
          Length = 949

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 928

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 125/247 (50%), Gaps = 10/247 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NVT+    E+ L     A   A   K+ F+  +S+E+R+P+ +I+G ++LL+ +   SL+
Sbjct: 263 NVTERKMVEQELHRAKLAAEAATRAKSEFLARMSHEIRTPMNSILGMSELLEET---SLD 319

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  YV+ + +S  +LL ++NDILD + ++AG + L      L DL+  + + +  K  
Sbjct: 320 FDQKNYVQTLHSSGEMLLAIINDILDFSKIEAGQVDLECVPFDLIDLVEGIGRILGLKAQ 379

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKA--ARDNGD 718
           E  +++      ++   V  D  RL QI   +LSNA+ F+  G     IL      D   
Sbjct: 380 EKGLKLTCWVAPEVHRHVLGDPTRLQQILINLLSNAIKFTEHGEVTLHILPGPLPADKET 439

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + +V + G  IP+D  +SVF  F        R+  G GLGL+I +  I L  G + I S
Sbjct: 440 ILVTVSDTGIGIPKDKQESVFESFSQADTSTTRKFGGTGLGLAISKKLIELMDGGIRIES 499

Query: 777 SDEGVTT 783
           ++   TT
Sbjct: 500 NEGAGTT 506


>gi|255007676|ref|ZP_05279802.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313145371|ref|ZP_07807564.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134138|gb|EFR51498.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 919

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 129/241 (53%), Gaps = 19/241 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+    E  L E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  T  L   
Sbjct: 680 DITELKETEAMLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTEDL--- 736

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y++ +  ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+
Sbjct: 737 -EERREYIKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKV 795

Query: 663 HENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +    ++++ D      S V+DR RL Q+ S  ++NA+ F+S GS  +    ++     
Sbjct: 796 PQG---VELVFDPHPSECSVVSDRNRLHQVISNFVNNALKFTSSGSIRVGYEEKEEC-VE 851

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V++ G  IP      +F RFV   +  H     G GLGLSI +S +   GG + + S 
Sbjct: 852 FYVRDTGIGIPAGQLPHIFERFVKLNTFIH-----GTGLGLSICKSIVEQLGGVIGVDSE 906

Query: 778 D 778
           +
Sbjct: 907 E 907


>gi|284038192|ref|YP_003388122.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283817485|gb|ADB39323.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1226

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           KNEA R   ++K  F+ ++S+E+R+P+  +IG  DLL  +KL   + +Q  YV+ +  SS
Sbjct: 705 KNEAERSL-KVKEQFLANMSHEIRTPMNGVIGMIDLLNDTKL---DEEQRSYVKTVKRSS 760

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLN++NDILDL+ ++AG M L+ + +   ++  ++      + +  N  +       L
Sbjct: 761 ETLLNILNDILDLSKIEAGKMVLHEAPVAFKEIFEKLIALFGQQANSKNNELTYHLGSDL 820

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIP 731
            +FV AD+ RLLQ+ S + SNA+ F+  G     +++I K  + N   I  VK++G  I 
Sbjct: 821 PTFVIADQTRLLQVLSNLTSNAIKFTENGTIRVEASLISKRGKFNRIRI-EVKDSGIGIS 879

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +     +FN F  V  + R    G GLGL+I +   +L  G + + S+
Sbjct: 880 QQNINLLFNSFSQVDTSSRKSFGGTGLGLAISKELASLMKGEIGVDST 927


>gi|159045973|ref|YP_001534767.1| putative PAS/PAC sensor protein [Dinoroseobacter shibae DFL 12]
 gi|157913733|gb|ABV95166.1| putative PAS/PAC sensor protein [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 28/295 (9%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
           ++  +   + +  ++W +D  G + WAN  Y   TE              KL  +   + 
Sbjct: 64  LAQLRATVEHIPLILWRQDNDGALTWANKPYIDLTE--------------KLHPDRAGRW 109

Query: 252 MISSSALEKNFCETVST--------LEHGNNKSYKI--VRVLNSFGEAGIAID--VSKEI 299
            +     +K+     +         +E G  + +++   RV +    +   ID  V  E+
Sbjct: 110 PMPHLFKQKSLAHPDTPGHRRISIDMEDGEKRWFEVQGFRVQDEILYSATPIDMTVKAEV 169

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           ++ + +        +L V +AIFD+ R L   N +  +L  ++  +L+  P   E+L+ L
Sbjct: 170 SLRNFVQTLTSTFAHLQVGLAIFDKRRQLVLFNPALTDLTTLEPEWLSARPGLSEVLDRL 229

Query: 360 RSANKLPEQLNWKTWKENIFSVYK--SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           R  N LPE  ++K W+  +  + K  SS T ++TW LP GQ   ++   +  GG    FE
Sbjct: 230 RDKNMLPEPKDYKEWRNRLTGLEKAASSGTFEETWALPTGQNYRILGRPHHDGGIALTFE 289

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +++ +V L  ++ + +++    +D L E +AVF  +G + LSN A+  LW   EN
Sbjct: 290 DISSEVSLTRRFRSEIELGQTALDTLEEAIAVFSENGTLVLSNKAYSELWDVSEN 344


>gi|108759669|ref|YP_629805.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463549|gb|ABF88734.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 706

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 10/247 (4%)

Query: 555 LTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L E+NE LR+       A   K+ F+ ++S+E R+PL  I+G+T++L     G LN  Q 
Sbjct: 456 LAEQNEMLRRQAIQVEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGELNPAQK 515

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  I ++   LL ++N+ILD+  ++AG M LN S   + +LL EV   +   +  + +
Sbjct: 516 RNLTRIDSNGRHLLEVINEILDITRIEAGRMPLNLSDFGIPELLQEVMAEMDPIIARSKL 575

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNN 726
            +      ++ +  +DRQ++ QI   +LSNA+ F+ +GS  V  +          SV + 
Sbjct: 576 TVSAHLGPRVPAVYSDRQKVKQIVLNLLSNALKFTHEGSVQVQAEYVAATSTLTISVTDT 635

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I     + +F  F  V ++      G GLGLSI      + GG V++ S+    +T 
Sbjct: 636 GIGIDPANQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRVTLQSTQGEGSTF 695

Query: 785 NCRIPSK 791
               P +
Sbjct: 696 TLHFPRR 702


>gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
 gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197]
 gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
          Length = 933

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1222

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 10/234 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L    E   K+ ++K +F+ ++S+E+R+P+  +IG  DLL  +    L  +Q +Y
Sbjct: 697 KASQELYHAKEIAEKSLKVKENFLANMSHEIRTPMNGVIGMIDLLNET---PLMEEQRKY 753

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  SS  LLN++NDILDL+ ++AG M+L  + I +   + ++      +    NI +
Sbjct: 754 VQTIKKSSETLLNILNDILDLSKIEAGKMQLRLAPISIEQTVEKLHALFYQQATLKNIDL 813

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN-- 726
               D  +   V AD  RLLQI S + SNA+ F+ +GS  I  + +   D +  ++ N  
Sbjct: 814 LYSIDSNVPKVVLADETRLLQILSNLTSNAIKFTDQGSVRIQISLQSKKDLVNKIRVNIS 873

Query: 727 --GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             G  I +D    +F  F  V N+      G GLGL+I +    L  G + + +
Sbjct: 874 DTGIGIAQDKLNVLFGYFNQVDNSSSKSYGGTGLGLAISKELSKLMNGEIGVQT 927


>gi|313149766|ref|ZP_07811959.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
 gi|313138533|gb|EFR55893.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 501

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 14/225 (6%)

Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           N+ALRKA   D +K++F+ ++S+E+R+PL  I+GF+ LL + +         +Y   I  
Sbjct: 267 NDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIEK 326

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVIS 673
           +  +L+ L++DILDL+ +++  M+ N S   LN +  ++      +M   N++  +++I+
Sbjct: 327 NGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADI-----ARMQRLNVKPGVELIA 381

Query: 674 D--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           D   +  S  AD  RL Q+ + +++NA+ F+S+GS  I    R   D    V++ G  + 
Sbjct: 382 DLPAEDVSITADPVRLEQVVNNLINNAIKFTSRGSIRIGYRRRGEKDVELFVEDTGKGMS 441

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           E++   VF RF       Q  G GLGL+I ++ +   GG +   S
Sbjct: 442 EEVIAHVFERFYKGDSFVQ--GTGLGLAICKTIVEHFGGEIRAES 484


>gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14]
          Length = 933

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
          Length = 933

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 958

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 140/262 (53%), Gaps = 13/262 (4%)

Query: 540 LTFVNVT-DSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           + F+ +T + +R    L  K  A  R+A  +K+ F+ ++S+E+R+P+  I+GFT+LL + 
Sbjct: 307 MEFIEMTLEKLRKSNELLRKATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSE 366

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +    N ++ +++  I  S   LL+L+ND+LDL+ +++G M++        +LL E+ ++
Sbjct: 367 E---TNEEKRKHLVTIYRSGEHLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVET 423

Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                +   + +    D  +  + V D  R+ QI + ++SN + F+S+G  + ++A    
Sbjct: 424 YLPMAYSKGLHLAYSLDNNVPEYVVGDAFRIKQILTNLVSNGIKFTSQG-YITIQANYKE 482

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           G   + V + G  IPE+    +F  F        R+  G+GLGL+I +  ++L  G + I
Sbjct: 483 GKITYIVNDTGIGIPEEKLDKIFEPFTQLDRTMSRKYGGMGLGLAITKKLVDLMNGKLYI 542

Query: 775 SS----SDEGVTTINCRIPSKE 792
            S      + V ++  ++PSKE
Sbjct: 543 ESHIGKGTKVVVSLPTKLPSKE 564


>gi|190894793|ref|YP_001985086.1| putative two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
 gi|190700454|gb|ACE94536.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
          Length = 2100

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 16/244 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ KQ ++
Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEF 1465

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I  + T LLNL++DILDL+ +++G + ++   I +N+LL  + +    +    N+  
Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVNNLLEVMARPFRHEAETRNLSF 1525

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717
             V     +  S + D +RL QI   +LSNA  F+++G   +  A+  +G           
Sbjct: 1526 AVEVGADVAKSIITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASATSGWSSDHPSLRHA 1585

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F V + G  IP +  + +F  F        R+  G GLGL+I     NL GG + 
Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645

Query: 774  ISSS 777
            + S+
Sbjct: 1646 LRST 1649


>gi|90021056|ref|YP_526883.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89950656|gb|ABD80671.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 685

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 8/244 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T +++T   +AE  + +  E   KA++ K+ F+  +S+ELR+PL  I+GF  L +  K  
Sbjct: 276 TNMDITQLKQAEEKVVKAKELAEKANKAKSEFLSSMSHELRTPLNAILGFAQLFELDK-- 333

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +LN  Q + +  I  +   LL L+ D+LDLA ++AG M      +    L++E    +  
Sbjct: 334 NLNPAQRENIGEIEKAGKHLLELIGDVLDLAKIEAGKMDFELEQLNPMRLVDECIPLMRP 393

Query: 661 KMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNG 717
              +N + I V  + +LG  S  AD  RL Q+F  ++SNA+ ++ K G   I+ +  + G
Sbjct: 394 LAVKNRVEINV-HNFELGNASVRADSVRLKQVFINLISNAIKYNRKDGRVDIVFSETEEG 452

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               SV++ G  IP    K +F  F    A RG+  G G+GL I    +   GG +   S
Sbjct: 453 HLRVSVQDTGFGIPLKQQKYMFQPFNRLGAERGEIEGSGVGLVITRQLVEQMGGELGF-S 511

Query: 777 SDEG 780
           SDEG
Sbjct: 512 SDEG 515


>gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 2457T]
 gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 2457T]
 gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor
           [Shigella flexneri 2002017]
 gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T]
 gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304]
          Length = 949

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 587

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|153933211|ref|YP_001382742.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152929255|gb|ABS34755.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
          Length = 617

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I     +L   K  + +  K+ QY
Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + + SVK+ G  
Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIVISVKDTGIG 518

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPED  +++F+RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567


>gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 301]
 gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 301]
          Length = 949

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 672

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 131/257 (50%), Gaps = 11/257 (4%)

Query: 542 FVNVTDSVRAERALTE---KNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           F ++T+  +AE+   E   +  A ++A+E   +K+ F+  VS+ELR+PL +I+G+  LL+
Sbjct: 263 FRDITERRQAEQVRVEILREQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLR 322

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             ++       +  +E I  ++ +   L+ D+LD++ V  G M+L    + L+ ++    
Sbjct: 323 ARRID--EKAATGALESIERNARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAV 380

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +++        I+++   D  +G  + D  RL QI   +L+NA+ F+ +G TV +  A+ 
Sbjct: 381 EAVQPAAAVKQIQLRCRIDAAVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLAQG 440

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                  V++NG  I       +F RF        R   G+GLGLSIV   + LHGG  +
Sbjct: 441 EIHAQLVVRDNGIGISPAFLDQIFERFRQADSTSTRVHGGLGLGLSIVRHLVELHGGTAA 500

Query: 774 ISSSDEGV-TTINCRIP 789
             S+ +G   T   R+P
Sbjct: 501 AESAGKGQGATFTVRLP 517


>gi|329939932|ref|ZP_08289214.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
 gi|329300758|gb|EGG44654.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
          Length = 646

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 24/271 (8%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L
Sbjct: 151 VKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNL 210

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +     
Sbjct: 211 SPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLT 270

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD---- 715
            E  +   V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A +D    
Sbjct: 271 AEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGQDVPQA 330

Query: 716 --------------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
                           D I FSV + G  I     + +F  F        R+  G GLGL
Sbjct: 331 IREQLLEAGSLADPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGL 390

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI      L GG +   S     +T    +P
Sbjct: 391 SISREIARLLGGEIHAQSEPGRGSTFTLYLP 421


>gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 5 str. 8401]
 gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401]
          Length = 949

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 536]
 gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
 gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536]
 gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
          Length = 949

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|108762821|ref|YP_628974.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466701|gb|ABF91886.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 531

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 179/385 (46%), Gaps = 27/385 (7%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q   + +    V +   T+D  ++G+ V   DG I   N  F  LW      L+  
Sbjct: 149 DVTEQHQAQERLEQTVSLLEATLDSTADGLLVVDRDGHITACNRQFEQLWGL--TGLAAC 206

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNA 536
           TH   + A         D +   + + + +++  +     +EL +  +LE YS   LP  
Sbjct: 207 THDATLLAAVREKLKAPDAF--LSRVQSLYEEPSQESFDIIELRNGRILERYS---LPQR 261

Query: 537 QTML------TFVNVTDSVRA----ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +  L      +F +VT+ V A    ER L E +EA+R    +++ F+   ++EL++PLT 
Sbjct: 262 RRGLITGRVWSFRDVTERVHAQRTQERLLAEAHEAIR----VRDDFLSIAAHELKTPLTP 317

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +    +LLK + L +      + V+   A    L  LVND++D  +V+AG +KL    + 
Sbjct: 318 LRLHLELLKRA-LAAREPIAPERVDKAMAQVDRLSALVNDLVDATSVEAGRLKLQRKPVS 376

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L ++ NE          E+    ++  +  L   + DR RL Q+ + +L NA+ +S  G 
Sbjct: 377 LLEVANEACSEFRGLSAEHAFMCELPQEDLL--VMGDRGRLSQVLANLLENAVKYSPLGG 434

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
           TV +  +  +G+ + SV + G  I  +    +F RF   SNA      G+GLGL I    
Sbjct: 435 TVRVSLSHVDGNAVLSVADGGIGISREEQAHLFGRFFRASNAPVSGFGGLGLGLYICRDI 494

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I  HGGH+ + S     +T +  +P
Sbjct: 495 IERHGGHIWVDSELGRGSTFHVSLP 519


>gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2142

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 16/243 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A+RAL EK E L    + K+ F+ ++S+ELR+PL +++  +  L  +  G+L  +Q ++
Sbjct: 1428 QAKRALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSENTDGNLTGRQVEF 1487

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I AS + LL L+NDILDL+ +++G M ++   +   DL   V+++      + +++ 
Sbjct: 1488 ARTIHASGSDLLELINDILDLSKIESGTMTVDVGPLRFGDLREFVERTFRQVADKKSLQF 1547

Query: 670  KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--------- 718
             +  +G L G    D +RL Q+   +LSNA  F+  G  T+ ++ AR             
Sbjct: 1548 DISLEGALPGEVQTDAKRLQQVLKNLLSNAFKFTESGQVTLSIQRARAGWSSDHPILRTA 1607

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F V++ G  IP+D  + +F  F        R+  G GLGLSI      L GG + 
Sbjct: 1608 PTVVAFVVRDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREIARLLGGEIR 1667

Query: 774  ISS 776
            + S
Sbjct: 1668 LES 1670


>gi|196229487|ref|ZP_03128352.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196226719|gb|EDY21224.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 602

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 152/342 (44%), Gaps = 30/342 (8%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTE-ENRLSPGTH--IRNIAATCSRYYNES 494
           T     + + V   DGR+  +NPA  + L+K   ++ L PG    +  I      Y    
Sbjct: 266 TFSAFPDPIIVVAADGRVNFANPAANTFLFKLGMKDGLPPGVQEEVNRIVKGAPDY---- 321

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                   + TSFD           ++   + E  +  LP    M    + T S+     
Sbjct: 322 --------LPTSFD----------RVIVFRIDEQEVFVLPRVIGMR---DETGSIFGAAV 360

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +    LR  DE+K + V  VS+EL++PLT++     LL   ++GSLN KQ++ +    
Sbjct: 361 VLQDVTRLRLLDEVKTNLVSTVSHELKTPLTSVRMGLHLLLEERIGSLNPKQTELLLAAR 420

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  LL ++ND+LDLA +++G   L    +   +L++  +  +   +     ++     
Sbjct: 421 EDSERLLRMINDLLDLAKLESGRTALPSLPMDPRELIDNAQDDLRALVESRGSKLVTKVT 480

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D +++  +FS  +SNA+  +  G  ++L+A   +G   FSV ++G  IP   
Sbjct: 481 PGLPRVSVDARQVAHVFSNFVSNAIKHTKPGEEIVLRAKNQDGRVRFSVVDHGPGIPIQF 540

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +F+RF       +  G GLGL+I    +   GG + + S
Sbjct: 541 QGQIFDRFF-RLPGSESTGAGLGLAIAREIVLAQGGVIGVQS 581


>gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 1018

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 123/223 (55%), Gaps = 13/223 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  I+G T+LL  ++L     +Q + V  + +S+  LL ++NDIL
Sbjct: 365 KSEFLANMSHEIRTPMNGIVGMTELLLETRL---TPEQRESVGLVKSSADALLTVINDIL 421

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D + ++AG + L+     L D++ +  +++A + H   + +   +        + D  RL
Sbjct: 422 DFSKIEAGKLDLDPLPFSLRDMVGDTLKALAGRAHAKGLELACELLPDLPDVLLGDAHRL 481

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI---FSVKNNGSSIPEDMCKSVFNRF 742
            Q+ + ++ NA+ F+ +G  V+++  R  ++GD +   FSV + G  IP +  K+VF  F
Sbjct: 482 RQVLTNLVGNAIKFTDRGE-VLVRCERVPESGDAVVLRFSVTDTGIGIPGEKLKAVFEPF 540

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
                   R+  G GLGL+I +  + L GG + + S S +G T
Sbjct: 541 TQADGSTTRKYGGTGLGLTICQRLVGLMGGRLWAESESGKGST 583


>gi|119898741|ref|YP_933954.1| putative two-component system sensor protein [Azoarcus sp. BH72]
 gi|119671154|emb|CAL95067.1| putative two-component system sensor protein [Azoarcus sp. BH72]
          Length = 916

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 156/355 (43%), Gaps = 23/355 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            ID  S+ V +    GR+   N A   L   E++ ++            +R     DG  
Sbjct: 411 VIDASSQCVGIADGTGRLLYQNRAHARLLGYEDDEIA--------GMPVARLLPLDDGGV 462

Query: 499 LFAAIITSFDDERKSLQGTLEL------LSDSVLEYSIIPLPNAQTMLTF---VNVTDSV 549
           L A I     D R  L G L +      +  S      +     QT   F    + T+ +
Sbjct: 463 LAAQIFGMVQDAR-GLVGQLPMRRKDGTVFTSFSNIGFVKDARGQTQYIFNIFTDFTEEL 521

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                L E  +   +A++ K+ F+  +S+ELR+P+  ++GF  LL+     +L + Q   
Sbjct: 522 ARRNELAEAKDTAERANQAKSDFLSSMSHELRTPMNAVLGFAQLLECDD--TLTADQRDN 579

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  +   LL L+N++LDLA ++AG + L+   + L + +++ +Q I        I +
Sbjct: 580 VAEILKAGGHLLTLINEVLDLARIEAGRIDLSLEPVALREAVDDCRQLIQPLAAARAIVL 639

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++    +L    ADR RL Q+   +LSNA+ ++ +G  V L A    G    SV + G+ 
Sbjct: 640 EMSLPDEL-VVRADRTRLKQVLLNLLSNAVKYNREGGRVSLAAQCREGRLRLSVSDTGAG 698

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           I  +   ++F  F    A      G G+GL+I    + L GG +   S   EG T
Sbjct: 699 IAPERMAALFEPFERLGAEASAIEGTGIGLTITRRLMELMGGEIGAESRVGEGST 753


>gi|110834459|ref|YP_693318.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647570|emb|CAL17046.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
           SK2]
          Length = 942

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 130/241 (53%), Gaps = 14/241 (5%)

Query: 546 TDSVRAERALTEKNEALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++SVR +RA+ E  EA +    +  K+ F+  +S+E+R+P+  I+G TDLL+ +    + 
Sbjct: 418 SNSVR-DRAIAEM-EAFKAGARNHAKSEFLATMSHEIRTPMNGIMGMTDLLRRT---DMT 472

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q QYV  I  S+  LL ++NDILD + +++G ++L+Y +I L +++++  +  A    
Sbjct: 473 QQQEQYVGTIYQSTQSLLRVINDILDYSKIESGKLELDYRSIALENIVDDCVRLFALHSS 532

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD- 718
           E  + + +  D ++   +  D  RL QI + +LSNA   + +G   +   LK   +N   
Sbjct: 533 EKGLPLYIHIDSRVPERIKTDPIRLKQIITNLLSNAFKCTDRGHIALHVNLKQPPNNKGV 592

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +  V + G  + E    S+F  F   + + +  G GLGL I +  I L GG + +SS
Sbjct: 593 CMLMIEVVDTGIGLDEGQQSSLFQAFTDLSAKTKHNGAGLGLVICKRLIELLGGEIGVSS 652

Query: 777 S 777
           S
Sbjct: 653 S 653


>gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRTD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|254787892|ref|YP_003075321.1| MASE1/CHASE/His Kinase A/ATPase domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684334|gb|ACR11598.1| MASE1/CHASE/His Kinase A/ATPase domain protein [Teredinibacter
           turnerae T7901]
          Length = 757

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 135/244 (55%), Gaps = 14/244 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT+  +  R A+  K+ F+  +S+ELR+PL +IIGF+  L  +   S + K  + +E I 
Sbjct: 518 LTQALDDARHANSAKSLFLASMSHELRTPLNSIIGFSVRLLKNLNQSKDPKSYRSLEVIE 577

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN---NIRIKV 671
            +   LLNL+NDILDL+ V+AG M ++   + L  LL+E   S+ T + E+    + +K+
Sbjct: 578 RNGRHLLNLINDILDLSKVEAGKMSIDREWVSLKTLLDETVTSL-TPLAESKGLTLELKM 636

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI-FSVKNNGS 728
           +   ++ +  AD++RL Q+   ++SN + ++S G   I   + +R+  + +   V + G 
Sbjct: 637 V---EVANVFADQKRLAQVLLNLVSNGIKYTSTGGISISSRRESREGHEGVAIDVVDTGV 693

Query: 729 SI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            I PED+ + VF R+  +         G GLGL++ E  +NLHGG +S+ S     +   
Sbjct: 694 GIKPEDIDR-VFRRYEQLDEPSHSSEVGTGLGLALAEELVNLHGGRLSVFSEYGEGSCFT 752

Query: 786 CRIP 789
           C +P
Sbjct: 753 CWLP 756


>gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82]
 gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15]
 gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O83:H1 str. NRG 857C]
 gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 16-3]
 gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella dysenteriae Sd197]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|126732976|ref|ZP_01748737.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126706593|gb|EBA05669.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 740

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ IK++F+ ++S+E+R+P+  II  ++LL+    G+LN +Q      IS+S+  LL +
Sbjct: 216 EAERIKSAFLANMSHEIRTPMNGIIAMSELLEQ---GTLNPEQRSMTSTISSSAVALLAI 272

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +NDILD + ++AG M ++       +L+ EV    +       + I V S  ++   V  
Sbjct: 273 INDILDFSKIEAGKMLVHAEPFDPINLVEEVATLFSPAAAAKGVEICVESVLEMPLMVMG 332

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q    ++ NA+ F++ G+  I     ++G  +  V + G  I ED    +F  F
Sbjct: 333 DSARLRQCLLNVIGNAVKFTATGNVHIWLNRSEDGQIVVKVTDTGVGIAEDKLDHIFEEF 392

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + + H  +  G GLGL+I    I L GG +S  S  +  +    R+P
Sbjct: 393 SQIDSTHTRRYDGTGLGLAISLRLIRLMGGSLSARSRPDEGSVFEMRLP 441


>gi|53714612|ref|YP_100604.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52217477|dbj|BAD50070.1| probable two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
          Length = 756

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T    +N+ D  + E+ L E  +   KA E+K SF+ ++S+E+R+PL  I+GF+ 
Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554

Query: 593 LLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           LL +     +  ++  QY++ I+ +S +LL L+NDIL+L+ +++G M  +     L+ L+
Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614

Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            +  Q+    I  ++H       ++ +G+ G  V  D+ RL+Q+ +  L+NA  F+ +GS
Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +  +     + +   V++ G  IP+   K +F RF       Q  G GLGLSI +  I
Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKMIFGRFYKQNEFAQ--GTGLGLSICKLII 726

Query: 766 NLHGGHVSISS 776
               G +S+ S
Sbjct: 727 EKLQGRLSLRS 737


>gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671]
          Length = 880

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 370 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 429

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 430 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 486

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 487 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 544

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 545 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 604

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 605 VDSEPGMGSQFTVRIP 620


>gi|329964007|ref|ZP_08301261.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328526430|gb|EGF53444.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 638

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 126/241 (52%), Gaps = 17/241 (7%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D   +E AL E  +   ++  +K++F+ +VS+E+R+PL  I+GF+D+L  S  GS   +Q
Sbjct: 397 DFEESEGALREAKDRAEESSRLKSAFLANVSHEIRTPLNAIVGFSDVL--SAGGSSEEEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT----KM 662
             Y E I  +S +LL L+NDILD++ ++A  +     T+   D++   +Q  AT    + 
Sbjct: 455 RTYFEIIKTNSDLLLRLINDILDVSRLEADRVSF---TLERCDVVQVCRQVTATVEQARK 511

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721
            +N  R +   +        D QRL Q+   +LSNA  F+  G+ T+ ++  RD+   +F
Sbjct: 512 SDNKFRFECGHESV--EMRTDIQRLQQVVINLLSNANKFTVDGTITLKIEIDRDSNMAVF 569

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  IP D  K VF RF       Q  G GLGLSI +      GG V I   D G 
Sbjct: 570 SVTDTGCGIPSDKQKLVFERFEKLNEYVQ--GTGLGLSICKLITEKWGGKVWI---DPGY 624

Query: 782 T 782
           T
Sbjct: 625 T 625


>gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
 gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302]
 gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|254420776|ref|ZP_05034500.1| MASE1 domain family [Brevundimonas sp. BAL3]
 gi|196186953|gb|EDX81929.1| MASE1 domain family [Brevundimonas sp. BAL3]
          Length = 560

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 125/236 (52%), Gaps = 7/236 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +ERA + +  A  +A E K+  + +V++E++SP+  +IG  +L  T +LG +  +Q++  
Sbjct: 320 SERARSGQVRA-EQASEAKSRLLANVAHEIKSPVAGVIGIGNLWSTGQLGPVTPQQTEMA 378

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  ++  +  L +D+LD+A  ++G +K++     +  LL +V+++   +    ++ ++
Sbjct: 379 DVLVKTARQVEALAHDLLDVARAESGAVKVDLRPTDIPGLLEDVRRAAMLRSEAQSVDVQ 438

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG--- 727
           V+ +G     VAD QRL Q+   + SNA+ +   G  VIL+A R +      V + G   
Sbjct: 439 VVCEGDGLIAVADSQRLAQVIDNLTSNALKYGGSGGRVILRALRADQHIRIEVVDFGPGL 498

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
           SS  +      FNR      R    G G+GL+I +  + L GG +  ISS  EG T
Sbjct: 499 SSQKQSQLFEPFNRL--GLERSSVEGHGVGLAIAKRLVELQGGAIGVISSPGEGAT 552


>gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sonnei Ss046]
 gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185]
 gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088]
 gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
 gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088]
 gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185]
 gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RcsD [Escherichia coli W]
 gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B]
 gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010]
 gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G]
 gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357]
 gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           KO11]
 gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120]
 gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167]
 gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UTI89]
 gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89]
 gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           IHE3034]
 gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252]
 gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1523

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 10/216 (4%)

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +SF+  +S+E+R+P+  ++G T LL  +    LN++Q  +VE I  S   LL L+NDILD
Sbjct: 850  SSFLATMSHEIRTPMNAVLGMTGLLLET---PLNAEQRDFVETIRVSGDALLTLINDILD 906

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
             + ++ G M+L      L   L EV    A   H   + + V+   ++  ++  D  RL 
Sbjct: 907  FSKLEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRLR 966

Query: 689  QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            QI + ++SNA+ F+ +G  VI    ++    +     SV++ G  IP+D    +F  F  
Sbjct: 967  QILNNLVSNAIKFTHQGEVVIQAELMQETATHVQLRLSVRDTGIGIPKDAQTKLFQPFTQ 1026

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
                  R+  G GLGL+I +    L GG + + S +
Sbjct: 1027 VDASTTRKYGGTGLGLAICKQLTELMGGRIFLESEE 1062


>gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli CFT073]
 gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
 gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073]
 gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU
           83972]
 gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046]
 gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68]
 gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180]
 gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|319955603|ref|YP_004166870.1| histidine kinase [Cellulophaga algicola DSM 14237]
 gi|319424263|gb|ADV51372.1| histidine kinase [Cellulophaga algicola DSM 14237]
          Length = 591

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 12/253 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKN--SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++ R  R+L +  +   K     N    +  VS+E+R+PL  IIGFT+LL  S   +L 
Sbjct: 54  SETPRKVRSLNKTFKKTNKTAPTSNDEQLIARVSHEIRTPLNGIIGFTELLSES---TLT 110

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q+ +V+ I  +S  LLNL+N++LD + + +G           N+++N+V     T + 
Sbjct: 111 EGQTTHVQAIKGASNTLLNLINELLDYSKLTSGTAYFESVDFNFNNIVNDVCYLCQTLIV 170

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGD 718
              +   V  SDG   + + D  +L Q+   ++ NA+ F   GS      ++K  +DN +
Sbjct: 171 NPKVAFNVSFSDGIPKNLIGDPSKLSQVLLNLIGNAIKFVEAGSIDLVIDVVKKNKDNVE 230

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV + G  I ED   S+F+ +   +   Q+   G GLGLSIV   +    GH+S+ S
Sbjct: 231 LSFSVIDTGIGIAEDKLTSIFDYYNQASEDTQKHYGGTGLGLSIVRHIVESLNGHISVKS 290

Query: 777 SDEGVTTINCRIP 789
                TT N  +P
Sbjct: 291 ELGVGTTFNFMLP 303


>gi|299782757|gb|ADJ40755.1| Sensor protein [Lactobacillus fermentum CECT 5716]
          Length = 380

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 37/294 (12%)

Query: 516 GTLELLSDSVLEYSIIPL---PNAQTMLTFVN-----VTDSVRAERALTEKNEALRKADE 567
           G L  ++   LE+ I P     N Q ++T VN     +T +++ ERA +EK+        
Sbjct: 101 GELHYIAQGHLEHRI-PFRVNGNQQHVITSVNALVDTITQAMQEERA-SEKS-------- 150

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI-------L 620
            K+  + +VS++LR+PLT+IIG+        LG +   Q Q  E I   S I       +
Sbjct: 151 -KDELITNVSHDLRTPLTSIIGY--------LGLIEDHQYQSEEDIVKYSHIAYDKAKQM 201

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            NLV D+ +   V      +N  T+ L  LL +V  S   +  +  + I V  +    S 
Sbjct: 202 KNLVEDLFEYTKVQQHGAPVNLMTVDLGQLLEQVGASFELEADKKGMAINVTCEPSPLSI 261

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD ++L ++FS +++NA+ +    S + L A +     + +V N+G  IP +  K +F 
Sbjct: 262 TADPEKLGRLFSNLVANALKYGHGASYIHLTAKQLGEKVVITVANDGEKIPAESVKHLFE 321

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF  V ++      G GLGL+IV+S + LH G V+ + SD+  T     +P K+
Sbjct: 322 RFYRVESSRNKATGGTGLGLAIVQSIVELHHGSVT-ARSDDQETAFVVTLPVKQ 374


>gi|253991255|ref|YP_003042611.1| two-component sensor/regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638303|emb|CAR66926.1| two-component sensor/regulator precursor [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782705|emb|CAQ85870.1| two-component sensor/regulator precursor [Photorhabdus asymbiotica]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 7/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RALTE  +    A++ K+  +  +S+ELR+PL+  +G  +LLKTS+   ++++Q Q  E 
Sbjct: 383 RALTEAKQQAELANKRKSRHLTTISHELRTPLSGTLGALELLKTSE---MDNEQLQLAET 439

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  LL ++N +LD + ++AG ++L Y+T  L  LL++   +I    H   + ++  
Sbjct: 440 AHQCTLSLLFIINKLLDFSRIEAGQVELQYATCQLLPLLDQSMATIQGMAHNKRLTLETF 499

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +  S V D  R+ QI   +L NA  F+  G  + L   R +   IF V ++G  + 
Sbjct: 500 VAADVPQSLVLDAIRVKQILVNLLGNACKFTDDGG-ICLTVTRSDNMLIFDVTDSGCGVA 558

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +   SVFN F       Q  G GLGL+I  +   + GG +  +S+    T++  ++P
Sbjct: 559 PENISSVFNPFYQVQEHAQ--GTGLGLAIAATLAKMMGGSLKFNSAFGLGTSVVFQLP 614


>gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
 gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
          Length = 761

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 138/288 (47%), Gaps = 22/288 (7%)

Query: 521 LSDSV--LEYSIIPLP----NAQTMLTF-VNVTDSVRAER-----ALTEKNEALRKADEI 568
           +SD++  L   + PLP         L F V V +   AER     AL +  EA   A+  
Sbjct: 180 MSDAIAGLRSPLRPLPWFASREFRALDFSVGVLEETFAERDEREFALEQAREAADIANRA 239

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IG  +LL+ ++L   +  Q  Y E I  S + LL ++NDIL
Sbjct: 240 KSEFLANMSHEIRTPMNGVIGMAELLQETRL---DDDQRMYAETIGKSGSALLTIINDIL 296

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           + + ++AG ++L+ +   L   + +V   ++ K  E  + + +  D  L   F  D  R+
Sbjct: 297 NFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKGVEVTMRYDPALPELFEGDAGRI 356

Query: 688 LQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF- 742
            Q+ + I  NA+ F+ +G   I     A+ +G  +    V + G  I +D    +F  F 
Sbjct: 357 RQVITNIAGNAVKFTCEGYVFIEVTGTAQPDGGLLVRLQVTDTGIGIAQDRIGRIFRAFE 416

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              NA      G GLGL+I    + L GG V + S     +    +IP
Sbjct: 417 QADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVPGKGSVFTIQIP 464


>gi|153937779|ref|YP_001386293.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|152933693|gb|ABS39192.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 617

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I     +L   K  + +  K+ QY
Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + + SVK+ G  
Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIVISVKDTGIG 518

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPED  +++F+RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567


>gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
 gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--QVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGIGSQFTVRIP 673


>gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SE11]
 gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 585

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 12/236 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY----ISASS 617
           L+K ++++  FV +VS+EL++P+T+I GF + L    +     K  Q +EY    I   S
Sbjct: 352 LKKLEQMRKDFVANVSHELKTPITSIKGFAETLLDGAM-----KDEQTLEYFLSIIWKES 406

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  LV D+LDL+ ++    +L+  T+ L DLL E+      K  E  I    +   K 
Sbjct: 407 ERLQTLVQDLLDLSKIEQQGFRLHLETVDLADLLREIAVMFQQKSEEKGIDF-YLHAPKS 465

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D  R+ QIF  +++NA+ ++ KG  V L       + +  VK+ G  I E     
Sbjct: 466 VYMEGDANRIKQIFINLITNALTYTPKGGKVELMIEEKEKEILVHVKDTGIGIDEQEIPR 525

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RF  V  A      G GLGL+IV+  +  H GH+++ S+    TT     P +
Sbjct: 526 IFERFYRVDKARGRNSGGTGLGLAIVKHLVEAHHGHITVKSTVGKGTTFTVHFPKQ 581


>gi|149918850|ref|ZP_01907336.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149820224|gb|EDM79641.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 422

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 30/267 (11%)

Query: 553 RALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           RAL ++N  L +A       D++K++F+  VS+ELR+PLT+IIGF+++L     G LN +
Sbjct: 155 RALQQQNAELERAIAHLRDVDQLKSNFLATVSHELRTPLTSIIGFSEMLAKGIAGPLNEE 214

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKM 662
           Q++Y   I      LL L+  IL+++ ++ G ++L      L D++     S    A + 
Sbjct: 215 QTEYANMILDRGEELLRLITQILEMSKMEMGTVRLKLRPTPLADVVGRAFGSAVIPADRA 274

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------- 712
           H N +R    +D  L   + D  ++LQ+   +++N + F+     V ++A          
Sbjct: 275 HVNLVRD--FAD-DLPLMLVDPDKVLQVLINLVTNGIKFNRPDGHVAVRAELAPIRRPFE 331

Query: 713 ----ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
                 +  D +  SV + G  IPED    +F+ F  V ++   +  G GLGLSIV+  I
Sbjct: 332 EDFFGEEVADAMRVSVSDTGIGIPEDQLARIFDAFYQVDSSSTREHGGAGLGLSIVKKLI 391

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
             HGG +   S     TT +  +P  E
Sbjct: 392 EAHGGEIWAESIVGVGTTFHFTLPLAE 418


>gi|260597946|ref|YP_003210517.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032]
 gi|260217123|emb|CBA30915.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032]
          Length = 877

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 120/212 (56%), Gaps = 7/212 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  I+G T L   ++L   N +Q +Y+  + +S+  LL++++DIL
Sbjct: 252 KSAFLANMSHEIRTPMNGILGMTQLCLDTEL---NGEQREYLSLVMSSAQSLLHIIDDIL 308

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++AG + L+   + L   +  + + +     E  I + V  D ++   +  D  RL
Sbjct: 309 DFSKIEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDERVPEMMRVDVVRL 368

Query: 688 LQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+ + +LSNA+ F+ +G  ++  A A  +G++ F V+++G  IP +  + +F  F    
Sbjct: 369 RQVLTNLLSNALKFTPQGEILLAVAPAAQDGEWRFRVRDSGIGIPPEKQQVIFEAFSQAD 428

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGL+I    + + GG ++++S
Sbjct: 429 TSTTRRYGGTGLGLTISARLVAMMGGQLTVAS 460


>gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
 gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|253568339|ref|ZP_04845750.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251842412|gb|EES70492.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 908

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 132/247 (53%), Gaps = 6/247 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VN T   +  + L E  +    +D +K++F+ ++S+E+R+PL  I+GF++L+  S+  + 
Sbjct: 524 VNNTKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPA- 582

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ +Y+  I +++ +LL L+NDILDL+ +++GI++    T  L  +  E+   I  K+
Sbjct: 583 --EKEEYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCGELYTMIQPKI 640

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              ++  ++ + G       DR RL Q++   L+NA+  +  G  + +    + G     
Sbjct: 641 TNPDVEFQMANSGPDCWIFLDRNRLKQVWMNYLTNAIKCTKSGH-IKMGYGIERGGIRIY 699

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V+++G  IP ++ + VF RF       Q  G GLGL+I  + I   GG V  +S+ +  +
Sbjct: 700 VEDSGVGIPIELQERVFGRFQKLNEFAQ--GTGLGLAISRAIIEGAGGEVGFTSTPDVGS 757

Query: 783 TINCRIP 789
           T    IP
Sbjct: 758 TFWAWIP 764


>gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli HS]
 gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ATCC 8739]
 gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           HS]
 gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           ATCC 8739]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 661

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 136/252 (53%), Gaps = 7/252 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           ++++  R E  L +  E    A   K+ F+ ++S+ELR+PL  IIGF+++L+    G+L 
Sbjct: 386 DISERKRHEMELLDARERAETASRTKSRFLANMSHELRTPLNAIIGFSEILRMQMFGALG 445

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + + ++Y + I+ S  +LL+L++DILD++ ++AG  +L+  T+    L+    + +  + 
Sbjct: 446 HPRYTEYAQLINESGALLLDLISDILDMSKIEAGKYELHPETVDAAALIESCVRLVRGRA 505

Query: 663 HENNIR-IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            EN I  +K I   +L G+ VAD + L QI   +LSN+  F+  G  + +          
Sbjct: 506 EENGIHLVKKIQCAELGGTLVADERALKQIMLNLLSNSAKFTPAGGRISVALTETEETIC 565

Query: 721 FSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F+V + G  IP D    +   F +  ++A    + G GLGL++V S   LHGG ++I S 
Sbjct: 566 FAVADTGRGIPADQIARLGQPFEQIATDAAL-SKEGTGLGLALVRSLAELHGGSMAIDSE 624

Query: 778 DEGVTTINCRIP 789
               TT+   +P
Sbjct: 625 LGVGTTVTVTLP 636


>gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli APEC O1]
 gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RojN [Escherichia coli APEC O1]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|91786123|ref|YP_547075.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91695348|gb|ABE42177.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 953

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ D +K  FV  VS+ELR+PLT+I G   L+     G L       V   +++   L+
Sbjct: 462 LKRIDRMKTEFVSTVSHELRTPLTSIRGSLGLISGGVAGELPEAVKSLVAIATSNCERLI 521

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-----TKMHENNIRIKVISDGK 676
            L+ND+LD   +++G ++LN     L  LL   +Q++A        H   +R++   D  
Sbjct: 522 RLINDMLDSEKIESGKLRLNLQAAELKPLL---RQALAANEGFAAQHGVKLRLRA-PDAA 577

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L + + D  RL+Q+ + +LSNA+ FS  GSTV +  +R        V + G  IPE    
Sbjct: 578 LQARI-DGDRLMQVMTNLLSNAVKFSPAGSTVEVMLSRTARQVRVEVSDQGPGIPEAFRN 636

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F +F    ++   Q+ G GLGL+I    I   GG +  +S+    TT    +P
Sbjct: 637 RIFQKFSQADSSDTRQKGGSGLGLNISRGLIESMGGRIGFNSNGGAGTTFFFELP 691


>gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
 gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|293372990|ref|ZP_06619359.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632058|gb|EFF50667.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 820

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VT++    + W F  +++ ++  E +   L ++   TI++L  G+ V       K  N  
Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506
           FR +++  E            A     Y N+  G   +D +  I+               
Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTG 379

Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +  E K   G + +L    +      L +   +    ++T+    +R L    E  
Sbjct: 380 KGLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKA 439

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +D +K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL 
Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+ILDL+ +++G ++ ++    L++L  EV  +   +  +    +   SD  L     
Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESL-MIET 555

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+ Q+ S ++ NA+ F+ +GS        DN   +F V + G+ I  +    VF RF
Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLADN-QIVFHVTDTGTGIEPEKVGRVFERF 614

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  Q  G GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659


>gi|253565117|ref|ZP_04842573.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251946582|gb|EES86959.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 756

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T    +N+ D  + E+ L E  +   KA E+K SF+ ++S+E+R+PL  I+GF+ 
Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554

Query: 593 LLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           LL +     +  ++  QY++ I+ +S +LL L+NDIL+L+ +++G M  +     L+ L+
Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614

Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            +  Q+    I  ++H       ++ +G+ G  V  D+ RL+Q+ +  L+NA  F+ +GS
Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +  +     + +   V++ G  IP+   K +F RF       Q  G GLGLSI +  I
Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKMIFGRFYKQNEFAQ--GTGLGLSICKLII 726

Query: 766 NLHGGHVSISS 776
               G +S+ S
Sbjct: 727 EKLQGRLSLRS 737


>gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
 gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|146301979|ref|YP_001196570.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146156397|gb|ABQ07251.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 653

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 15/219 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K SF+ ++S+E+R+PL  IIGFT+LL  +    L+ +Q  +++ +  +   LL +VNDIL
Sbjct: 177 KESFLANMSHEIRTPLNAIIGFTELLSGT---PLDKQQQAFIQDVQTAGENLLLIVNDIL 233

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           DL+ +++G + L      L   L  V   +  K   + +   +  D +L   +  D+ RL
Sbjct: 234 DLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKT-ADGVEFNLFLDAELPDVITGDQGRL 292

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNR 741
            QI   +  NA+ F+++G   I  + ++ G+        FSVK+ G  IP++  +S+F R
Sbjct: 293 NQIMVNLAGNALKFTNEGEVTI--SVKNKGETEDSYTIRFSVKDTGIGIPKEHLESIFER 350

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F        R+  G GLGLSIV+  + LH   + + S +
Sbjct: 351 FTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSRE 389


>gi|307151156|ref|YP_003886540.1| histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981384|gb|ADN13265.1| histidine kinase [Cyanothece sp. PCC 7822]
          Length = 707

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K E+L++  E+K+ F+ ++S+E R+PL +I+  ++ L     G LNS+Q + V +I 
Sbjct: 203 LDQKAESLKRVSELKSRFLSNMSHEFRTPLNSILSLSNFLLKRMDGELNSEQEKQVTFIR 262

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  L  +VND+LDLA V+AG   +      + DL   ++  +   +  NN  + +I +
Sbjct: 263 NAAQQLSEMVNDLLDLAKVEAGKTDIYADKFEIGDLFGTLR-GMFRPLLINNSSVSLIFE 321

Query: 675 GK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               + S  +D  ++ QI    +SNA+ ++ KG T+ + A        FSV + G  I  
Sbjct: 322 DPDHIPSVYSDEGKIAQILKNFISNALKYTEKG-TITVAAVPIGNHVTFSVADTGIGIAP 380

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +  +S+F+ FV      Q+R  G GLGL I      L GG VS+ S
Sbjct: 381 ENLESIFDEFVQLKSPLQKRVKGTGLGLPISRKLAQLLGGDVSVIS 426


>gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
 gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
          Length = 470

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 8/235 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++ ++Q    ++  I   S  
Sbjct: 237 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMENQQFCEHFLHIILKESER 293

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ + +LL E+K  +  K  E  I ++V    +  S
Sbjct: 294 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLGEIKMVLENKSQEKEISLQV-DVLRHVS 352

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G TV +    D  +    V + G  I  +    +F
Sbjct: 353 VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVALLEDEHNAYIKVSDTGIGISTEEIPRIF 412

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  V  A      G GLGLSIV+  +  H G +++ S+    TT    +P  +
Sbjct: 413 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSTVGEGTTFTVALPKAD 467


>gi|78486263|ref|YP_392188.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
 gi|78364549|gb|ABB42514.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
          Length = 901

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 21/255 (8%)

Query: 544 NVTDSVRAERALT-------EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++T+ V  E++L        E+     K+++ K+ F+  +S+ELR+PL +IIGF  LL+ 
Sbjct: 483 DITERVHLEKSLEKAKQDAEERRLVAEKSNQAKSEFLSSMSHELRTPLNSIIGFAQLLE- 541

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L  L+ KQ + ++ IS S   LL+L+ND+L+LA +++G + L+     L  ++ E  Q
Sbjct: 542 --LSDLSEKQKKQLKNISTSGEHLLHLINDLLELAKIESGNISLSVERTELKPIVEECLQ 599

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
            + T   +++I+I +        FV AD  RL Q+    L+NA+ ++ +  ++ L A + 
Sbjct: 600 MVHTAAEKHHIKITISEKSNCNYFVIADHLRLKQVLVNFLTNAIKYNRENGSITLFAEKK 659

Query: 715 -------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFIN 766
                   NG    S+++ G  I E   K +F  F    H      G G+GL+I +  I 
Sbjct: 660 PAEESPHKNGCIRISIEDTGYGIAEKYQKKLFQPFNRLGHETSTIEGTGIGLAITKDLIE 719

Query: 767 LHGGHVSISSSDEGV 781
              G V   S+ EGV
Sbjct: 720 KMDGQVGFEST-EGV 733


>gi|307300057|ref|ZP_07579842.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306904946|gb|EFN35529.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 917

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 7/265 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +P+  T+  + ++T+  + +  L         A+E K+ F+  +S+ELR+PL  IIG+++
Sbjct: 385 IPDGGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSE 444

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L        + +    ++ I+++   LL+L+NDILDL+ ++A  M++   T  + DLL 
Sbjct: 445 MLIEEARDHEDEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLR 504

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +V  ++A  M  N        +  LG   +D+ +L Q    +LSNA  F++ G  V L+ 
Sbjct: 505 DVAATVAPLMARNGNEFTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFTN-GGRVTLRV 563

Query: 713 AR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            R    D    +F V + G  +  +  + +FN F        R   G GLGLSI  SF  
Sbjct: 564 RREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCR 623

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           + GG V++ S     +     +P++
Sbjct: 624 MIGGVVTVESEVGKGSVFTMEVPAQ 648


>gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
 gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042]
 gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|317152082|ref|YP_004120130.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942333|gb|ADU61384.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 643

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 176/392 (44%), Gaps = 49/392 (12%)

Query: 445 EGVAVFGPDGRIKLSNPA------FRSLWKTEENRLSPGTHI----------------RN 482
           EG+    PDG ++ +NPA      + SL +   N  S G+ I                R 
Sbjct: 253 EGILQATPDGVLRRANPAMARIFGYDSLDEFLSNVRSLGSRIMVNPDRMQDFYKQVRERG 312

Query: 483 IAATCSRYYNESDG---W-DLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537
                   Y   DG   W  L A  I S   E   ++G LE ++D    E  +  L    
Sbjct: 313 EIKRFEAEYYRRDGKTIWGSLNARAIYSDSGEIIFIEGILEDITDRKKAEQDLADLNRHL 372

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL---- 593
             L      D V   R L E N+ LR+ DE+K++F+  VS+ELR+PLT+I+GF  L    
Sbjct: 373 EQLVRERTEDLVNKARELEEANQRLRELDEMKSAFLSSVSHELRTPLTSILGFAKLLHKE 432

Query: 594 -----LKTSKLGSLNSKQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNYST 644
                L  ++   L  K+ Q ++     IS     L  L+ND+LDL  +++G M      
Sbjct: 433 FTRNYLPLAQNEPLLVKKGQRIQNNLLIISHEGERLTRLINDVLDLNKIESGSMGWRDER 492

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + ++D++    QS+ T +   N ++ ++S  D  L   +AD  R+ Q+   +L+NA  F+
Sbjct: 493 LNMSDIVETAVQSV-TGLFSQNPQVGLVSEIDPALPVVIADPDRMQQVLINLLNNAAKFT 551

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQR-RGVGLGL 758
             GS V ++A    G     + + G  I PED  + +F +F     A  G + +G GLGL
Sbjct: 552 DDGS-VTVRAFPRFGQVRVEIADTGVGIHPEDQNR-IFEKFHQTKTATMGDKPKGTGLGL 609

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I    +  + G + + S     +T    +PS
Sbjct: 610 TICREIVEHYSGRIWVESEPGKGSTFIFTLPS 641


>gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sp. D9]
 gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
 gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234]
 gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234]
          Length = 989

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 127/247 (51%), Gaps = 12/247 (4%)

Query: 546 TDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           T+ +R  R   E+  +A  +A   K+ F+ ++S+E+R+P+  +IG  +LL+ ++L   + 
Sbjct: 322 TEQLRKSREELERARDAAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTEL---SE 378

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +YV  I  S+  L++L+NDILD + ++AG ++L     VL D L +  Q++A +  +
Sbjct: 379 QQRRYVSIILHSADTLMDLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAAD 438

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI 720
             + +   I        + D  RL QI   ++ NA+ F+  G  V+   L    D+G  +
Sbjct: 439 KGLELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGQGDHGAHL 498

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  IPE   + +F  F        R+  G GLGL+I        GG + + S 
Sbjct: 499 QFEVRDTGIGIPEAQQERIFEAFAQADASTTRQYGGTGLGLAIAAQLAEKMGGRMQLDSK 558

Query: 778 DEGVTTI 784
             GV ++
Sbjct: 559 -PGVGSV 564


>gi|224540763|ref|ZP_03681302.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517630|gb|EEF86735.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 630

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 124/229 (54%), Gaps = 6/229 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S + ++ L    E   ++D +K++F+ ++S+E+R+PL  I+GF+ +L  +   +   +  
Sbjct: 388 SQKHKKELILAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAET---ADTPESH 444

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I  ++ +LL L+NDILDL+ ++AG++   Y+ + +N  + +++ +   +M  N  
Sbjct: 445 EYIRIIEDNNCLLLQLINDILDLSRIEAGLLDFCYTEVDINGCIRKLEDAFHFRMPANVE 504

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            I      K   +  ++ RL Q+    LSNA+ ++++GS  +      +G+  F V++ G
Sbjct: 505 CIAEFGMKKCHVY-TEKNRLGQVLGNYLSNAIKYTTEGSITVGYYPPKDGNMRFYVRDTG 563

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             I  +  K++F RFV   +  Q  G GLGLSI +         V +SS
Sbjct: 564 CGISPEKQKAIFQRFVKLDNFKQ--GTGLGLSICQMIAEKMHATVGVSS 610


>gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii CDC 3083-94]
 gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii
           CDC 3083-94]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|42524723|ref|NP_970103.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576933|emb|CAE78162.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 626

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +KN+ L + +E+K +F+  +S++L++P+  I G TD++ T  + +L+++Q + V+ I  S
Sbjct: 386 QKNKLLSQVEELKTNFISMMSHDLKTPIARIQGMTDVILTDSV-ALSNQQREAVDTIKHS 444

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK---VIS 673
           S  LL  +N IL    +++  ++LN  +  +N+LL EV      + HE   R+K   ++S
Sbjct: 445 SDDLLKFINAILSYGKIESQGVQLNMQSKDINNLLQEV-----IRKHEFLARVKRIQIVS 499

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   +     D + + Q+FS ++ NA+ +S + + +++ +       I  V + G  IP+
Sbjct: 500 ELEPMFPVQVDPELMKQVFSNLVENAIKYSPEDTKIMVSSEETPSKVIVQVADQGPGIPQ 559

Query: 733 DMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D  +++F +F    N      +G GLGL + + F  LH G++ + SS    +T    +P
Sbjct: 560 DELQNIFMKFFRSKNVKSSPIKGSGLGLYLAKYFTELHHGNIFVESSHGNGSTFTVELP 618


>gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|284054265|ref|ZP_06384475.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 823

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 42/359 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           IDH+++G+ V   +G+I  +NPA  +L+   +        IR     CS  ++     D+
Sbjct: 226 IDHIADGLLVTDAEGKITRTNPALANLFALGD------LDIR--GKLCSEAFS----GDV 273

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLE------YSIIPLPNAQTMLTFVNVTDSVRAER 553
              ++ S      + QG ++L  D + +         +  P+    L ++    SV   R
Sbjct: 274 LNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVLKQVSSPSGSEELIYIG---SVVLFR 330

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--------------SKL 599
            +T + E     D +K  F+  VS+ELR+PLT+++GF  L++               +K+
Sbjct: 331 DITAEKEI----DRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVILPFIKTDDTKI 386

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               ++ +  V+ I +    L NL+ND+LD+A ++AG  + +   + +  ++     +  
Sbjct: 387 NRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIKTVVERAISATT 446

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  +   I++ V     L   + D  +L+Q+F  ++SNA+ F+  G+ V LK        
Sbjct: 447 SLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTETGN-VTLKLMAVKSAI 505

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             SVK+ G  I     + VF +F  V N    + +G GLGL I +  I  HGG + + S
Sbjct: 506 KVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQHHGGSIWVES 564


>gi|283853302|ref|ZP_06370551.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571283|gb|EFC19294.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 575

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 129/243 (53%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + EA  +A   K  F+ ++S+E+R+PL  I G   L+  S   +L+  Q +Y+    
Sbjct: 186 LAIQKEAAEQASRAKTEFLANMSHEIRTPLNGIFGMIQLIDNS---NLDEYQKEYLVAAK 242

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L +L++ ILDL+++++G   L  +T  L+D+   V++  A +     +  +   D
Sbjct: 243 HSCKRLTSLLSHILDLSSIESGKFSLRENTFSLSDIKESVRELFAIESARKKLLFQFNLD 302

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGD---FIFSVKNNGS 728
            +L S  + D  R+LQI   +  NA+ F+  GS  I   +  R + D    +F+++++G 
Sbjct: 303 LRLPSRVIGDEARVLQILFNLAGNAIKFTESGSVRIDACELPRHDPDACRVLFTIEDSGI 362

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP+ + K +F+ FV    A++ + +G GLGL+IV   + L GG +++ S +   TT   
Sbjct: 363 GIPDQLQKEIFDPFVQAEGAYKRRFQGAGLGLAIVRKLVRLLGGTLAVDSVEGEGTTFYL 422

Query: 787 RIP 789
            +P
Sbjct: 423 SLP 425


>gi|258516163|ref|YP_003192385.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779868|gb|ACV63762.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 920

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 14/255 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + VRA  AL EK   L +    K+ F+ ++S+ELR+PL +++    +L  +   +L  KQ
Sbjct: 489 EKVRA--ALEEKAGQLEQTSRYKSEFLSNISHELRTPLNSLLILAQMLAENDKSNLTPKQ 546

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y E I +S   LL L+NDILDL+ V++G M +    + L D+   +++      ++  
Sbjct: 547 VEYAETILSSGQDLLVLINDILDLSKVESGKMDVCPRAVKLKDIQKFLERQYLPVANQKT 606

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFI 720
           I   ++ D  L  +  AD QRLLQI   +LSNA  F+ +G  +     + K   D  +F 
Sbjct: 607 IVFTILIDSDLPETIFADEQRLLQILKNLLSNAFKFTEQGCVLLSIRKVQKKLTDKQEFP 666

Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F+V + G  I ++    +F  F        R+  G GLGLSI      L GG + +
Sbjct: 667 TMLSFAVSDTGIGISQEKHIMIFEEFRQADGTTSRKYGGSGLGLSISNKIAMLLGGFIEL 726

Query: 775 SSSDEGVTTINCRIP 789
            S +   +T    +P
Sbjct: 727 ESEEGKGSTFTLYLP 741


>gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2]
 gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2]
          Length = 948

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L S   + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPSGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    D  +  +   D  RL Q+ S +LSNA+ F+  G  V+    + +
Sbjct: 556 YLPLVVRKQLGLYCFIDPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCS 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
 gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|265765924|ref|ZP_06093965.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263253592|gb|EEZ25057.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 756

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T    +N+ D  + E+ L E  +   KA E+K SF+ ++S+E+R+PL  I+GF+ 
Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554

Query: 593 LLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           LL +     +  ++  QY++ I+ +S +LL L+NDIL+L+ +++G M  +     L+ L+
Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614

Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            +  Q+    I  ++H       ++ +G+ G  V  D+ RL+Q+ +  L+NA  F+ +GS
Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +  +     + +   V++ G  IP+   K +F RF       Q  G GLGLSI +  I
Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKMIFGRFYKQNEFAQ--GTGLGLSICKLII 726

Query: 766 NLHGGHVSISS 776
               G +S+ S
Sbjct: 727 EKLQGRLSLRS 737


>gi|188583112|ref|YP_001926557.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179346610|gb|ACB82022.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 920

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  ++  +A+  K+ F+  +S+E+R+P+  ++   +LL +++L     +Q +Y + I+
Sbjct: 260 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASAEL---PPRQQRYAQVIA 316

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD A V++G +++    +   D+ + V    A +     + +    D
Sbjct: 317 RSGQSLLAIINDILDFAKVESGRLEVERIPLSPRDVADTVVTLFAERAASAGLDLAAQID 376

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSI 730
           G +  S + D  RL Q+    +SNA+ F++ G  ++   ++A+        +V + G  I
Sbjct: 377 GDVPRSLLGDPVRLGQVLGNFVSNALKFTAAGHVLVRMTMEASASGPVLCIAVSDTGIGI 436

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PED    +F  F        RR  G GLGLSI E  I   GG V + S     +T   RI
Sbjct: 437 PEDRLAGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGCVGVESRLGAGSTFWARI 496

Query: 789 PS 790
           P+
Sbjct: 497 PA 498


>gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272]
          Length = 933

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|186681745|ref|YP_001864941.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464197|gb|ACC79998.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 659

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 219/502 (43%), Gaps = 47/502 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           SKEI +   L+     L +  + I   +    +   N+ FV++W+I  + + +       
Sbjct: 160 SKEIELEASLSLLRSTLESTAIGIVAVNSEGDILSLNQKFVDMWQIPESLILSKKC-PRC 218

Query: 356 LEFLRSANKLPEQLN---WKTWKENIFSVYKSSE-------THKDTWHLPNGQTLHVIVT 405
             F  +  K P+  N   W+   ++ F  Y   E        H    HL +G+ +     
Sbjct: 219 KAFFENKLKDPQAFNRLIWEVSSQSDFESYDILELKDGRVFAHYSKPHLLDGKII----- 273

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G +W   ++T     E     L  V+  T+   ++         R+   NPA   
Sbjct: 274 -----GRVWSIWDITESKQTEEALR-LNAVRFRTLAETTDTSTFLIQGTRLCYINPAVEQ 327

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYY----NESDGWDLFAAIITSFDDERKSLQGTLELL 521
           L    +  L  G  +R +  +  R      +E+  ++     I +     + L   + +L
Sbjct: 328 LTGYTKEELLTGFDLRRLIKSKRRRQVRKQSEATNFEYQEMNILTKSGTERWLACAVVML 387

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            D VL++   P+     M+  +++TD   AE  L +  E  ++  E++  F+  V ++ R
Sbjct: 388 -DGVLDFGGKPVE----MIAGIDITDYKYAELGLNQALEQAKQLSELRARFLSMVCHQFR 442

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL NI+ F++ L   ++     K+ Q  +++I  ++  L  +++DIL  +  +A   K+
Sbjct: 443 TPL-NIVSFSNSLLKEEVDKRTQKKIQPLLDHIQKATEQLGQMLDDILFFSKAEAE--KI 499

Query: 641 NYSTIVL------NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           NY    L      NDL+ E++ +I+       IRI  ++     +   D++ L  I   +
Sbjct: 500 NYEPKPLELVDFCNDLVAEMQMTIS------KIRINFVTQENSLTACIDKKLLEPILKNL 553

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           L NA+ +S  G TV L+ + +N   IF V++ G  I     + +F  F    +  +  G 
Sbjct: 554 LDNAIKYSPSGITVDLRLSCENEQLIFQVEDRGIGISALDQQRIFEPFYRGTNIDRIPGT 613

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLGLSI+++ ++LH G VS+ S
Sbjct: 614 GLGLSILKTLVDLHHGQVSVES 635


>gi|171913995|ref|ZP_02929465.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 702

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  ++ F      +R E  L        ++++ K+ F+  +S+E+R+P+  I+GF++LL
Sbjct: 179 GALALMLFRESLKQLRREERLAAAKVRAEQSEKEKSIFLATMSHEIRTPMNAILGFSELL 238

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 + + ++ ++ E I  S   LL ++NDILDL+ ++AG+++++     + D++  V
Sbjct: 239 ANE---AQSEQEKRHAETILVSGRALLQIINDILDLSKIEAGMLQISSDPCDVRDVVRFV 295

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712
           +Q  A +  E  + +   IS     S + D  RL QI   ++ N++ F+ +G  TV L  
Sbjct: 296 QQMFARQAIERGLELHAEISPSVPNSLLIDSIRLRQILVNVVGNSLKFTERGGVTVRLHG 355

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
            R             V++ G  IP +M   VF  F  V+   + Q RG GLGL+IV+   
Sbjct: 356 ERGTEHRSRMLLTVEVEDTGIGIPREMQAEVFRPFVQVNGGTKSQTRGTGLGLAIVKRLS 415

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
           +L GG + + S     T      P  E
Sbjct: 416 DLMGGRILLDSQPGRGTLFRFEFPHVE 442


>gi|170077522|ref|YP_001734160.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp.
           PCC 7002]
 gi|169885191|gb|ACA98904.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp.
           PCC 7002]
          Length = 760

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 122/256 (47%), Gaps = 17/256 (6%)

Query: 551 AERALTEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------TSKLG 600
           A+R   E  +AL   + A + K  F+  +S+EL +PLT+IIG ++ L          KL 
Sbjct: 362 AQRRARELEDALLSAQVASQSKKEFIHIMSHELLTPLTSIIGLSNTLSYWTADDNPKKLS 421

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               KQ  Y++ I  S T L NL+ DILD +  +A    L+     L  L   V      
Sbjct: 422 P--EKQRVYLQTIHESGTRLRNLLQDILDFSQTEAARSVLDLQKFSLKQLCYRVLNGFQE 479

Query: 661 KMHENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NG 717
                 I +K I+  + +  SF AD  RL +I S +LSNA+ F+S G  V     R+   
Sbjct: 480 LGDRQGINLKFINQLEPEQDSFYADPIRLEKILSHLLSNAIKFTSHGGEVTFSIWREKQK 539

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           D  F VK+ G  IP      +F +F        RR  G G GL++V+  + +H G + ++
Sbjct: 540 DVSFQVKDTGIGIPPQQIPLLFEQFQQLEPSMSRRYDGAGFGLALVKQLVEIHQGQIHVT 599

Query: 776 SSDEGVTTINCRIPSK 791
           S+ +  +    RIP++
Sbjct: 600 STPKKGSIFTVRIPNQ 615


>gi|126649988|ref|ZP_01722221.1| hypothetical protein BB14905_01920 [Bacillus sp. B14905]
 gi|126593160|gb|EAZ87122.1| hypothetical protein BB14905_01920 [Bacillus sp. B14905]
          Length = 364

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 5/229 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A++ KN  V ++++++++PLT+IIG+  LL  +K   +  K+ +YV      S  L +
Sbjct: 136 QEAEQRKNDLVVYLAHDIKTPLTSIIGYLSLLDEAKDMPVEQKE-KYVTITLEKSYRLEH 194

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+  ++   +   + L   +I LN +L +V       +     +  V  DG + +  A
Sbjct: 195 LINEFFEITRFNLQSIILEKDSIPLNYMLMQVADEFYPLLTPRGQKAVVHIDGDI-TIYA 253

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L ++F+ IL NAM +S   ST+ + A ++N +   S  N G +IP +  K +F +F
Sbjct: 254 DGNKLARVFNNILKNAMAYSDPNSTIEITAKKENNETFISFSNTGKTIPPEKLKMIFEKF 313

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + NA   Q  G GLGL+I    +  HGG ++ +SS+E  T     IP
Sbjct: 314 YRLDNARSTQTGGAGLGLAISNEIVQAHGGTITATSSNEK-TIFTVMIP 361


>gi|83643847|ref|YP_432282.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631890|gb|ABC27857.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 830

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 15/236 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  EA   A+E K+ F+  +S+E+R+P+  I+G  +LL  S+L   +++Q++ +  
Sbjct: 171 RKLLEAKEAAESANEAKSLFLATMSHEIRTPMNGILGMLELLSHSQL---SAEQTKMIST 227

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+  LLN++NDILD + ++AG M+L   T+ + +++  V +++A   ++ N+ +   
Sbjct: 228 VRDSAFSLLNILNDILDFSKIEAGRMELENITLSVEEIIEGVAETVAASANKRNLHLHCY 287

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV---------ILKAARDNGDFIFS 722
            D  +  + V D  RL QI   + SNA  F+   + +         +L +A        S
Sbjct: 288 VDPDIPDALVGDEVRLRQILFNLCSNATKFTDTANGLQGCVTLRADLLHSAGQLYSIRIS 347

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           VK+NG  + +     +F+ F        RR  G GLGLSI +    + GG + ++S
Sbjct: 348 VKDNGIGMDQVTLDKLFSPFTQGESSTTRRYGGTGLGLSICKRLTEIMGGAIEVAS 403


>gi|134291128|ref|YP_001114897.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134317|gb|ABO58642.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 766

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 8/234 (3%)

Query: 549 VRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +R +R+L     A  +AD    +K+  +  VS+ELR+PL  I G+ ++L+++   S ++ 
Sbjct: 372 LRTQRSLQGARTARERADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSA---SDDAL 428

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q Q ++ I  S+  L  +V DILD +++  G ++L+   + +  L  +   +  T     
Sbjct: 429 QQQAIDAIDRSAHSLTRMVGDILDASSLATGKLRLDAMPVDVVRLFADATSAFQTAASAA 488

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I ++            D +RL Q+ S ++SNA+ F+  G  V +    D    + +V +
Sbjct: 489 GIALEFDCTASACVVSGDAERLRQMLSNLVSNALKFTPAGGAVTVTLTHDAAHAVLAVGD 548

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G  I  +    VF+ F     +    RRG+GLGLSIV     LHGG V + S+
Sbjct: 549 TGQGIASEFIPYVFDMFRRADGSPASPRRGLGLGLSIVRHIAELHGGEVRVDSA 602


>gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863]
 gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|167764948|ref|ZP_02437069.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
 gi|167697617|gb|EDS14196.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
          Length = 828

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 126/238 (52%), Gaps = 16/238 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E  L +  E    AD +K++F+ ++S+E+R+PL  I+GF+ LL     G   
Sbjct: 587 DITELKETEAKLIDAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSSLLVQ---GENP 643

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  +  ++ +LL L++DILDL+ ++AG        + +N L  ++ +++  K  
Sbjct: 644 EEREQYMAIVEENNELLLQLISDILDLSKIEAGTFDFVKQELDVNQLCEDMVRTMKLKAR 703

Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                ++V+ D +L     V+DR RL Q+ +  ++NA+ F+S GS  +     +     F
Sbjct: 704 PG---VEVVFDHRLPECIIVSDRNRLNQVIANFMNNAIKFTSTGSIRLGYGQAETNLLRF 760

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V + G  I ++    +F+RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 761 YVADTGIGIIQEKQAEIFDRFVKLNSFVH-----GTGLGLSISKSIVEQLGGTIGVES 813


>gi|157692812|ref|YP_001487274.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157681570|gb|ABV62714.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 593

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 38/358 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498
           +++GV     DG I ++NP    F   W  E+N ++  G  +              +  +
Sbjct: 262 MADGVITINIDGTILMTNPPAERFLQAWYYEQNMKIKDGDEL------------PPEARE 309

Query: 499 LFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           LF   +++  ++    +LQG   +L  S       PL N Q      +V  +V   R +T
Sbjct: 310 LFHTAVSTEKEQMIEVTLQGRTWVLLMS-------PLYNQQ------DVRGAVAVLRDMT 356

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+    R+ D+++  F+ +VS+ELR+P+  + G+++ +     GS   K+ +  + I   
Sbjct: 357 EE----RRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAGSEEEKK-EIAQIIYDE 411

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  +  LVND+LDLA ++AG + LN  +    +L  ++ +       E  + +       
Sbjct: 412 SLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQVD 471

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
              FV D  ++ Q+F+ ++ NA+  + +G  V              VK++GS IPE+   
Sbjct: 472 EPHFVLDPDKMEQVFTNLIDNAIRHTPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDLP 531

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F RF     A    R G GLGL+IV++ +  H G +   S     T     IP K+
Sbjct: 532 FIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFTFYIPRKK 589


>gi|150016898|ref|YP_001309152.1| osmosensitive K+ channel signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903363|gb|ABR34196.1| osmosensitive K+ channel signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 861

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 130/243 (53%), Gaps = 7/243 (2%)

Query: 554 ALTEKNEALR-KADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVE 611
           A T+K   L  +++ ++++ ++ +S++LRSPL  I G  + +++T  L S  +K  + ++
Sbjct: 617 AETQKKSNLEIESERLRSNLLRSISHDLRSPLAGIKGAVSTIIETGNLISEETK-GELLQ 675

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   +  L+ LV ++L +   D G +K+  S  ++ +++ E  Q  A +  +  + + V
Sbjct: 676 GIYDDTEWLIRLVENLLSMTRFDGGNLKVRKSIEIVEEVVYEAVQRTAKRFRDYKMEVTV 735

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +  +     D   + Q+   +  NA+ F+ KGS + +K   +N + IF V +NG  I 
Sbjct: 736 PEEVIMVPM--DGSLIEQVLINLFDNAVKFTPKGSLIEVKIYENNKNVIFEVIDNGMGIS 793

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E++   +F RF +N  +    RRGVGLGL+I +S +  HGG +S  + DEG       IP
Sbjct: 794 EEILPHIFERFFTNGDKISDSRRGVGLGLAICKSIVEAHGGTISAHNKDEGGAVFRFNIP 853

Query: 790 SKE 792
            +E
Sbjct: 854 KEE 856


>gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
 gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|269793330|ref|YP_003318234.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100965|gb|ACZ19952.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 673

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 137/261 (52%), Gaps = 18/261 (6%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +VT     E  L    E  +   + ++  +  VS+E+R+PL +I+G+ DLLK  +  
Sbjct: 340 TLKDVTSRKMVEEMLRSAKEQAQAESQARSRLMSRVSHEIRTPLNSIMGYLDLLK-ERGP 398

Query: 601 SLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-- 656
           SLN  Q  S++++ I  S   LL++V +I+D++T++AG +K+      L DL++EV+   
Sbjct: 399 SLNLPQDASEWLDTIQRSGYHLLSVVEEIMDMSTIEAGKLKVREDRFNLRDLVSEVEHLM 458

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAA 713
           S+  +    ++R++ +          DR ++ Q+   +L NA+ F+ +G+  +   +++ 
Sbjct: 459 SLGAQRKGLDLRVRYLKSVP-DQVTTDRGKVKQVLINLLGNAIKFTDEGTVTMEIWVESV 517

Query: 714 RDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
           RD G        F V+++G  +   + +S+F  F  +  RG   G GLGL+I  SF    
Sbjct: 518 RDMGARSHATVCFRVRDSGPGVDPSIRRSLFQPFEKHGSRG---GAGLGLAISHSFAEAL 574

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG + +   + G + +  ++P
Sbjct: 575 GGSLELEEVESGASFV-LKVP 594


>gi|254785978|ref|YP_003073407.1| fog: ggdef domain containing protein [Teredinibacter turnerae
           T7901]
 gi|237684430|gb|ACR11694.1| putative fog: ggdef domain containing protein [Teredinibacter
           turnerae T7901]
          Length = 718

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 11/250 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S + E ALTE   A R     K +F+  +S+E R+PL +IIGF+  L+      ++    
Sbjct: 462 SSQLEVALTEAETANRA----KTAFLAKMSHEFRTPLNSIIGFSRRLQDKLKHQVDEFHY 517

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  I  +   LL LVNDI+D+  +++G +KL      +N+LL E           +++
Sbjct: 518 EAIRRIHTNGHHLLALVNDIIDMTAIESGGVKLRAHEESVNELLQEAVAECQIYAERSDV 577

Query: 668 RI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSV 723
           R+  K ++   L   V DR +++QI   +LSNA+  + +GS    + +   D     F V
Sbjct: 578 RLVKKELAVDVL--IVCDRNKVVQILVNLLSNALKATRRGSVQLSVKQLLEDREHIYFEV 635

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I E   + +F +F     R G  RG GLGL +V  F+ +HGG V ++S     T
Sbjct: 636 VDTGIGISEQDQQKLFKKFSQLESRIGSERGTGLGLFLVREFVKMHGGSVDLTSELGVGT 695

Query: 783 TINCRIPSKE 792
           T   ++P K+
Sbjct: 696 TFTVKLPVKQ 705


>gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489]
 gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|255011930|ref|ZP_05284056.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 543

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 14/225 (6%)

Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           N+ALRKA   D +K++F+ ++S+E+R+PL  I+GF+ LL + +         +Y   I  
Sbjct: 309 NDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIEK 368

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVIS 673
           +  +L+ L++DILDL+ +++  M+ N S   LN +  ++      +M   N++  +++I+
Sbjct: 369 NGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADI-----ARMQRLNVKPGVELIA 423

Query: 674 D--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           D   +  S  AD  RL Q+ + +++NA+ F+S+GS  I    R   D    V++ G  + 
Sbjct: 424 DLPAEDVSITADPVRLEQVVNNLINNAIKFTSRGSIRIGYRRRGEKDVELFVEDTGKGMS 483

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           E++   VF RF       Q  G GLGL+I ++ +   GG +   S
Sbjct: 484 EEVIAHVFERFYKGDSFVQ--GTGLGLAICKTIVEHFGGEIRAES 526


>gi|60682633|ref|YP_212777.1| putative two-component regulator sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60494067|emb|CAH08859.1| putative two-component regulator sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 756

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T    +N+ D  + E+ L E  +   KA E+K SF+ ++S+E+R+PL  I+GF+ 
Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554

Query: 593 LLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           LL +     +  ++  QY++ I+ +S +LL L+NDIL+L+ +++G M  +     L+ L+
Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614

Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            +  Q+    I  ++H       ++ +G+ G  V  D+ RL+Q+ +  L+NA  F+ +GS
Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +  +     + +   V++ G  IP+   K +F RF       Q  G GLGLSI +  I
Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKMIFGRFYKQNEFAQ--GTGLGLSICKLII 726

Query: 766 NLHGGHVSISS 776
               G +S+ S
Sbjct: 727 EKLQGRLSLRS 737


>gi|309791141|ref|ZP_07685674.1| Signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226839|gb|EFO80534.1| Signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 499

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 15/238 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+ELR+PL  IIG+++LL    + +        +  I  + T LL L++DIL
Sbjct: 245 KSTFLANMSHELRTPLNAIIGYSELLIEDAVDAQEEDLESDLRRIHRAGTHLLGLISDIL 304

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG M L Y    L  +L++V  ++A    +   R      G+ GS  AD  R+ 
Sbjct: 305 DISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQRGNRYITQYSGQPGSIYADPVRVR 364

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDF------------IFSVKNNGSSIPEDMCK 736
           QI   +L NA  F+  G T+ L+ A +  D+            +F V + G  + ED   
Sbjct: 365 QILINLLGNACKFTENG-TISLRIAIEGDDYAAGHDKSTGNAILFEVTDTGIGMSEDQMA 423

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F  F        R+  G GLGL++   F  + GG V + S     +T   R+P ++
Sbjct: 424 RLFQPFTQADDSTTRKYGGTGLGLALTRYFCQMMGGTVDVVSRLGQGSTFMVRLPMRD 481


>gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
 gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
          Length = 1214

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 18/258 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L  +Q ++
Sbjct: 751  QARRALEERAEQLAISSRYKSEFLANMSHELRTPLNSLLVLAKLLADNAEGNLTPRQVEF 810

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I  + T LL L+NDILDL+ V+AG M ++   I L  L+  ++ + A    +  +  
Sbjct: 811  AKTIHEAGTALLQLINDILDLSKVEAGRMDIHPQQISLPRLVEYMEATFAPLAEDKELAF 870

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
             V  D      +  D QRL Q+   +LSNA+ F+ +G  V L+  R   D          
Sbjct: 871  TVRLDPSAPQEIYTDEQRLQQVLRNLLSNAIKFTHEGE-VRLEVGRAPADVQYADEALKN 929

Query: 719  ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  F V + G  I  +    +F  F        R+  G GLGLSI      L GG +
Sbjct: 930  TPDMLAFRVIDTGIGIAPNKLDVIFEAFRQADGTTSRKYGGTGLGLSICRQIARLLGGEI 989

Query: 773  SISSSDEGVTTINCRIPS 790
             ++S+    +T    +P+
Sbjct: 990  HVASTPGEGSTFTLYLPA 1007


>gi|258624915|ref|ZP_05719842.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
 gi|258582771|gb|EEW07593.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
          Length = 1171

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   Q  LT  N +T+    E AL +      +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 608 PINRRQYYLTLFNDITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGL 667

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     + S +SQ +   + +S   L + VNDILD + ++A  ++L+ +T  L D
Sbjct: 668 MEILASR----IKSNESQLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLAD 723

Query: 650 LLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L  + +S         +   V    D +L   V D  RL QI + +LSNA+ F+ KGS 
Sbjct: 724 ELCPLLRSFEATADLQGLDFIVYWQPDARLLVQV-DALRLNQIITNLLSNALKFTEKGSI 782

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            I    +    F F V + G  + E    S+F  FV       RR  G GLG+SIV + +
Sbjct: 783 RIC-VEQSEQHFTFEVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLV 841

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            L GGH+ + S  +  TT+   +P
Sbjct: 842 ELMGGHIHVESEIDQGTTVRVSLP 865


>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 733

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E   ++ + K  F+  +S+++R+P+  +IG   LL  SKL      Q+   + 
Sbjct: 214 RELVEAKEIAEESVKTKAIFLASMSHDIRTPMNGVIGMLGLLMNSKLDDTQKHQASLAK- 272

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
             +S+  LL+L+NDILD + V+AG M L Y    + D L +  + IA +  E  + + + 
Sbjct: 273 --SSAKALLSLINDILDFSKVEAGKMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELILE 330

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNN 726
           ++D +     AD  R+ QI S I+ N++ F+S+G   I KA  D     +   I  + ++
Sbjct: 331 VTDIEQNMIKADPGRIRQILSNIVGNSIKFTSEGFIAI-KAILDVTEPTDARLIIEMSDS 389

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  IPED   ++F+ F        R+  G GLGL+IVE    L  G V + S
Sbjct: 390 GIGIPEDKIDTLFDSFSQVDASTTRKYGGTGLGLAIVEKLCELMNGKVEVKS 441


>gi|86132863|ref|ZP_01051454.1| two-component system sensor histidine kinase/response regulator
            [Dokdonia donghaensis MED134]
 gi|85816569|gb|EAQ37756.1| two-component system sensor histidine kinase/response regulator
            [Dokdonia donghaensis MED134]
          Length = 1216

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 134/238 (56%), Gaps = 10/238 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+  +    L    E   ++D +K++F+ ++S+E+R+P+  I+GF++LL+   +    
Sbjct: 827  DITEQKKLSGELISAKEKAEESDRLKSAFLANLSHEMRTPMNGILGFSELLRRKNISE-- 884

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             K+  Y+E +      LL+ +++I+D++ +++ I+ +  S + LN L++++      K+ 
Sbjct: 885  EKKDIYLELLEKEGHRLLSFISNIVDISKIESNIINIENSHLNLNSLIDDLYSKYQLKLE 944

Query: 664  ENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              NI+++V   +SD    +   D  +L+QI S +L NA+ F+ +GS       ++     
Sbjct: 945  GTNIKLEVNKALSDTD-SAIETDENKLVQILSNLLENAIKFTKEGSIEFGYTLKEEI-LQ 1002

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F VK++G  I E+  K++F+RF +   R Q    GVGLGLSIV+  I +  G V I S
Sbjct: 1003 FYVKDSGIGIDEEEQKNIFDRF-TQGKREQTHNLGVGLGLSIVKGLIKILNGSVWIES 1059


>gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1]
          Length = 949

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|299145369|ref|ZP_07038437.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298515860|gb|EFI39741.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 808

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VT++    + W F  +++ ++  E +   L ++   TI++L  G+ V       K  N  
Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506
           FR +++  E            A     Y N+  G   +D +  I+               
Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSG 379

Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +  E K   G L +L    +      L +   +    +VT+    +R L    E  
Sbjct: 380 KGMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKA 439

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +D +K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL 
Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+ILDL+ +++G ++ ++    L++L  EV  +   +  +    +   SD  L     
Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVNLVYESSDESL-MIET 555

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+ Q+ S ++ NA+ F+ +GS        DN   +F V + G+ I  +    VF RF
Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIEPEKVGRVFERF 614

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  Q  G GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659


>gi|149174810|ref|ZP_01853435.1| probable sensory transduction histidine kinase [Planctomyces maris
           DSM 8797]
 gi|148846504|gb|EDL60842.1| probable sensory transduction histidine kinase [Planctomyces maris
           DSM 8797]
          Length = 529

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 121/235 (51%), Gaps = 4/235 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  LRK ++  + FV +VS+E R+PLT I  +  L++   +G +N +Q Q ++  S  + 
Sbjct: 158 NRRLRKLNQTAHRFVDNVSHEFRTPLTVIKDYVSLVREGLVGEINKEQGQMLDIASIRTD 217

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L N+V+D+LD++ ++AG++        L D++  V   +  K     I  +  +D  L 
Sbjct: 218 ELNNMVDDMLDVSKLEAGLLGAWRRPCQLPDIIECVCSPLTKKAAVKGIHFEADADPGLP 277

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCK 736
           +   D +++ ++   +++NAM F     +V L  +   + G+ I  V +NG  I E+   
Sbjct: 278 AIYCDSEKVGRVIVNLVTNAMKFCGNPGSVRLWTEERAEQGEIIIGVSDNGPGIDEEGLA 337

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF  +        +G GLGL+I +  ++L+ G +S+ S     TT +  +P
Sbjct: 338 EIFQRFKQLKTQLDSSTKGFGLGLNIAKELVDLNFGEMSVESQVGTGTTFSFSVP 392


>gi|114706370|ref|ZP_01439272.1| putative sensor histidine kinase protein [Fulvimarina pelagi
            HTCC2506]
 gi|114538231|gb|EAU41353.1| putative sensor histidine kinase protein [Fulvimarina pelagi
            HTCC2506]
          Length = 1146

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 123/235 (52%), Gaps = 7/235 (2%)

Query: 564  KADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621
            +AD + K   +  VS+E+R+P+T ++GF D ++    G + N +   Y+  I  SS  +L
Sbjct: 909  EADSVRKTQLLASVSHEIRTPMTAVLGFADAIEGEAFGPIGNPRYLDYIADIKRSSRHVL 968

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +LVND+L+L+  +AG ++L++ T+ LN ++ EV   +        I ++      +   V
Sbjct: 969  DLVNDLLELSKAEAGGLELDFRTVALNQVVGEVVSMMQPVAGGARIVLRSNLPPSVPQVV 1028

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPE---DMCKS 737
            AD + + QI + ++ NA++ +  G  +I+ +  R++G      ++NG  + E   +  K 
Sbjct: 1029 ADERSIRQIMTNLVQNAINSTPAGGQIIVSSQYREDGSVTLRCRDNGVGMNEKELEFAKQ 1088

Query: 738  VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             F R   +    +RRG GLGL +  +    +G  ++I S+ +  T +  R P  +
Sbjct: 1089 PFGRPKLDGGP-RRRGTGLGLPLAYAMAEANGAAIAIDSAPQNGTMVELRFPPGQ 1142


>gi|111220737|ref|YP_711531.1| putative two component hybrid sensor kinase [Frankia alni ACN14a]
 gi|111148269|emb|CAJ59940.1| putative two component hybrid sensor kinase [Frankia alni ACN14a]
          Length = 618

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+  AL +A+E K  F++ VS+ELR+P+ +++G   LL      SL  +Q + VE I 
Sbjct: 230 LDERGIALTRANEAKTRFLRSVSHELRAPVNSVLGLARLLLDPAGDSLTDEQRRQVELIL 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS+  LL LVND+LDL+  ++G ++     + +  +L  +  S+        + + +  D
Sbjct: 290 ASTKDLLTLVNDLLDLSKAESGRLEPALEQVDIRAVLAHLDGSLRPLATRPGVELVIEED 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI-FSVKNNGSSIP 731
           G++G    D   L ++   ++ NA+ F+  G  V + AAR  D GD + F V++ G  I 
Sbjct: 350 GEVGPLYTDETLLGRVLRNLVGNALKFTEHGE-VRVTAARTGDAGDTVTFVVRDTGIGIS 408

Query: 732 EDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
            +  + VF  F  + +H   R RG GLGL        L GG + + S
Sbjct: 409 AEDVEQVFEEFYQARSHLHARTRGTGLGLPYARRVCELLGGRLDLVS 455


>gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407]
          Length = 933

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|184157755|ref|YP_001846094.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|332876441|ref|ZP_08444208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
 gi|183209349|gb|ACC56747.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|323517647|gb|ADX92028.1| Signal transduction histidine kinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735299|gb|EGJ66359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
          Length = 1154

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 136/261 (52%), Gaps = 8/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +       + L +   A  +A++ K+ +V  +S+ELR+PL +I+G++ LL+ 
Sbjct: 652 QTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 711

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L+ +    +  IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q
Sbjct: 712 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 769

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  + N++        L  +V  D++RL Q+   +L NA+ F++ G T+ LK    
Sbjct: 770 MFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 828

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I E   + +FN F   SN  +G   G+GLGL IV+  ++L GG +S
Sbjct: 829 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLS 888

Query: 774 ISSS-DEGVT-TINCRIPSKE 792
           ++S  ++G    I   +PSKE
Sbjct: 889 VTSQLNQGSQFKIKFYLPSKE 909


>gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BL21(DE3)]
 gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 933

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|322508065|gb|ADX03519.1| Sensor protein [Acinetobacter baumannii 1656-2]
          Length = 912

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 136/261 (52%), Gaps = 8/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +       + L +   A  +A++ K+ +V  +S+ELR+PL +I+G++ LL+ 
Sbjct: 410 QTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 469

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L+ +    +  IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q
Sbjct: 470 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 527

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  + N++        L  +V  D++RL Q+   +L NA+ F++ G T+ LK    
Sbjct: 528 MFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 586

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I E   + +FN F   SN  +G   G+GLGL IV+  ++L GG +S
Sbjct: 587 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLS 646

Query: 774 ISSS-DEGVT-TINCRIPSKE 792
           ++S  ++G    I   +PSKE
Sbjct: 647 VTSQLNQGSQFKIKFYLPSKE 667


>gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus
           Nitrospira defluvii]
          Length = 578

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 11/256 (4%)

Query: 535 NAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             Q    FV ++++  + E  L    EA   A   K+ F+ ++S+E+R+P+  ++G T+L
Sbjct: 290 GTQQFTIFVQDISERKQQEERLCRAKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMTEL 349

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L T+ L   N  Q +Y   +  S T LL+++NDILD + ++AG + L Y    L  LL E
Sbjct: 350 LLTTPL---NDTQRRYAHTVHNSGTNLLHIINDILDFSKIEAGRLVLEYIPFGLRQLLTE 406

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                  +  +  + + V     +      D  RL QI + ++ NA+ F+  G+  +   
Sbjct: 407 TIGLYHEQARKKGLALSVTMTPDIPDMAHGDPHRLRQILTNLVGNALKFTETGTVAVFVR 466

Query: 713 ARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
             +   G     V + G  IP    + +F+ F S A     R   G GLGL+IV+  + +
Sbjct: 467 PDEGRPGRVRIEVTDTGIGIPLQAQEKIFDSF-SQADGSMTRKYGGTGLGLAIVKQLVGM 525

Query: 768 HGGHVSISSSDEGVTT 783
            GG + ++S+    TT
Sbjct: 526 MGGQLGLTSTPGQGTT 541


>gi|317131254|ref|YP_004090568.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
 gi|315469233|gb|ADU25837.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
          Length = 460

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 125/232 (53%), Gaps = 5/232 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A+R+ ++I++ FV + S+EL++PLT I GF +L++   +   +  +S Y+  I   +  +
Sbjct: 230 AVRRTEQIRSEFVANASHELKTPLTAIKGFVELMEADIITEPDQIKS-YLGRIRKETERM 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + L+NDIL L+ +++      ++ + +        +S+A   H+ N+ ++V  +G +G+ 
Sbjct: 289 IELINDILHLSELESVNADTGFTAVSMKLTAQRAAESVALSAHKRNVSVQV--EGDVGTV 346

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            A+  R++Q+   ++ NA+ ++     V +     +G+  F V + G  IP +  + VF 
Sbjct: 347 RANPDRMMQLALNLIDNAVKYNKPDGNVRVTIISKDGNVHFCVNDTGVGIPPEARQRVFE 406

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF  V      ++ G GLGLSIV+  + L+ G + I S     T+I   +P+
Sbjct: 407 RFYRVDKGRSRRQGGTGLGLSIVKHIVGLYKGRIEIESIVGEGTSITVILPA 458


>gi|256389376|ref|YP_003110940.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
           44928]
 gi|256355602|gb|ACU69099.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
           44928]
          Length = 1119

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 18/258 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L E+   L  +   K+ F+ ++S+ELR+PL +++    L+  +  G+L  +Q +Y
Sbjct: 662 QARQELEERANQLTMSSRYKSEFLANMSHELRTPLNSLLILARLMSDNAEGNLTERQVEY 721

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  + + LL L+NDILDL+ ++AG M +  + I ++ L++ V+ +   +  +  + +
Sbjct: 722 AETIHGAGSDLLQLINDILDLSKIEAGRMDVQPARIAVSQLVDYVEATFRPQTEQKGLEL 781

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNGDF 719
           +V ++         D QRL Q+   +LSN++ F+  G           V+L    D+ + 
Sbjct: 782 RVRVAPSVPAHLFTDEQRLQQVLRNLLSNSVKFTETGHVELVVDTVGDVVLGGPEDSNEV 841

Query: 720 I------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F+V + G  I +D  ++VF  F        RR  G GLGLSI      L GG 
Sbjct: 842 TLEPAVSFAVSDTGIGIVDDKIQTVFEAFQQEDGTTSRRYGGTGLGLSISREIAKLLGGG 901

Query: 772 VSISSSDEGVTTINCRIP 789
           +   S     +T    +P
Sbjct: 902 IRAESQRGRGSTFTLFLP 919


>gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
 gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
          Length = 1611

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 10/243 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            TFV+V+D  RAE  L    E   +   +K+ F+ ++S+E+R+PL  IIG + L   S   
Sbjct: 853  TFVDVSDRQRAEVELRRAKELAEETAALKSRFLANMSHEIRTPLNAIIGMSHLALKS--- 909

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             L+++QS YV  +  +   LL ++NDILD + ++AG + +  S   L+ +L  V   +  
Sbjct: 910  GLDARQSGYVVRMQQAGQHLLGVINDILDFSKIEAGKLVVERSPFALDRMLEGVADVVGF 969

Query: 661  KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
            K     + + + ++       V D  RL QI     +NA+ F+ +G   ++++  R+ G 
Sbjct: 970  KAAAKGLELVLDVAPDVPQHLVGDALRLGQILINFANNAVKFTEQGEIHLLVRLERNEGA 1029

Query: 719  FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +   F V++ G  I     + +F  F        RR  G GLGL+I +S   L GG V 
Sbjct: 1030 RVWLRFEVRDTGIGIAPQQMQRLFQSFEQADTSTTRRYGGTGLGLAISKSLAELMGGEVG 1089

Query: 774  ISS 776
            + S
Sbjct: 1090 VRS 1092


>gi|82523852|emb|CAI78595.1| signal transduction histidine kinase [uncultured candidate division
           OP8 bacterium]
          Length = 350

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 4/237 (1%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + + L  A   K+  + ++S+ELR+PL  I+GF+  +K    G + ++K  +Y++ IS S
Sbjct: 103 ERDILLSASRAKSEVIANMSHELRTPLNAILGFSSAIKCETFGPMGHTKYREYIDDISHS 162

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            + LL+L+NDILD++ ++AG M L+  +I +  +  E    +     EN + +       
Sbjct: 163 GSHLLDLINDILDVSAIEAGKMTLHEDSINVATIAKEAFHVVECLAVENQVMLAYDIAEN 222

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMC 735
           L     D +R  QI   + SNA+ F+  G +V L    D+ G    SV + G  +  D  
Sbjct: 223 LPPLFVDERRFKQIVLNLASNAIKFTPPGGSVTLGLRLDDQGRHTLSVTDTGIGMSADEL 282

Query: 736 KSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           K+    F   N+H  +R  G GLGL + +  + LH G + I+S+    T +    P+
Sbjct: 283 KNALTPFGQLNSHLARRHDGTGLGLPLTKGLVELHDGTLDITSTKGTGTIVTVVFPA 339


>gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UM146]
          Length = 949

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1798

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1312 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1371

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1372 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1431

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  AA D  D I       
Sbjct: 1432 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAAADVPDAIREQLLEA 1491

Query: 721  ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                        FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1492 GSLADADADLIAFSVTDTGIGIASGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1551

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1552 LLGGEIHAASEPGRGSTFTLYLP 1574


>gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia sp. 4_1_40B]
 gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular
           synthesis regulator component C
 gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1]
 gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520]
 gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482]
 gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88]
          Length = 949

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|116617477|ref|YP_817848.1| Signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096324|gb|ABJ61475.1| Signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 361

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 139/261 (53%), Gaps = 6/261 (2%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P A T    ++V++++ AE     + E  R+++  K+  + ++S++LR+PLT IIG+  L
Sbjct: 104 PYAPTTQALIDVSNTI-AENTRRIREEE-RQSERSKDEMITNISHDLRTPLTAIIGYLGL 161

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +  S   ++ +Y+    + S  +  LV D+ + +   A    LN +++ LNDL  +
Sbjct: 162 VEMGQALSEKDRK-KYIHTAYSKSNQMKVLVEDLFEYSQTQAQDAALNITSLSLNDLFGQ 220

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +      +  E NI +  +++ ++    AD  +L ++   ++SNA  +    + + L A 
Sbjct: 221 LLAGYELEAQEKNIALNQLTNPEMIVIEADSDKLARVLMNLVSNAFKYGDGATFIKLTAQ 280

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            D+ + +  V N+G  IP++    +F+RF  V ++   +  G GLGL+IV+  +  H G 
Sbjct: 281 IDDKNVVIRVTNDGVKIPDEAIGDIFDRFYRVESSRNSKTGGTGLGLAIVKGIVVQHHGS 340

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           V++ S D+ +T+    +P K+
Sbjct: 341 VAVESDDD-MTSFIITLPLKQ 360


>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 781

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 11/225 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E ++ A++ K+ F+  +S+E+R+P+  +IG  ++L+ +    LN  Q  Y++ I  S   
Sbjct: 258 ERVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDT---PLNDSQKHYLDVIFRSGES 314

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLG 678
           LL ++NDILD + ++AG M L      LN+LLN+  Q  +   H+ +I  +  IS     
Sbjct: 315 LLEIINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAISPETPT 374

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARDNGD----FIFSVKNNGSSIPED 733
               D  RL QI   ++ NA  F+S G  ++L K+ +D         FS+ ++G  I ++
Sbjct: 375 QLRGDPTRLRQIVVNLIGNAFKFTSNGHVMVLVKSLQDRTSEHPLLRFSIVDSGIGISKE 434

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +++F  F        RR  G GLGL+I +    L GG + + S
Sbjct: 435 IQRNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMGGTIGVES 479


>gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
 gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
          Length = 1230

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 135/260 (51%), Gaps = 8/260 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + ++  +++T+  + E  L E      +A  +K++F+ ++S+E+R+P+  IIGFT+L+  
Sbjct: 630 KVIMFMIDITERKKMENDLREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLD 689

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   +   Q  YV  I+ S+  LL+L+NDILD A ++ G+++L +    +N L++ V  
Sbjct: 690 TE---MKPDQQNYVSTINNSAKSLLHLLNDILDSAKLEKGMLELEFFDFSMNTLVDSVIS 746

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           ++  +  +  + +++ I D   G +     R+ Q+   ++ NA+ F+  GS V LK    
Sbjct: 747 TLWLQARKKELDLQLEICDEVSGYYYGPSHRIRQVLMNLVGNAIKFTDIGS-VKLKVYAQ 805

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           N D I F V + G  I  D   ++F  F        RR  G GLG +I +  +   GG +
Sbjct: 806 NQDVIHFDVVDTGIGIAADRLDAIFEPFTQADASMSRRFGGTGLGTTISKQLVEAMGGTI 865

Query: 773 SISSSDEGVTTINCRIPSKE 792
             +S     +  +  +P K+
Sbjct: 866 KATSQLGKGSCFSINLPLKK 885


>gi|237797729|ref|ZP_04586190.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331020579|gb|EGI00636.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 782

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 15/248 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL+   E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 387 DISDRRVAEIALSTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 444

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   + +I  +   LL L+N++LD+A ++AG + LN   + L+ +L E    ++    
Sbjct: 445 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLNLEPVPLSSVLREALVLVSPMAT 502

Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + +I +  +     +LG  VADRQRL+Q+   +LSNA+ ++     V ++  +  G    
Sbjct: 503 DASIELSELPQLPDELG-VVADRQRLIQVLLNLLSNAIKYNRPDGKVRIEVGQSAGRVTV 561

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+       
Sbjct: 562 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGGLSVD------ 615

Query: 782 TTIN--CR 787
           TT+N  CR
Sbjct: 616 TTLNEGCR 623


>gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
 gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
          Length = 1188

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 126/532 (23%), Positives = 224/532 (42%), Gaps = 69/532 (12%)

Query: 293 IDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           ID++++     +L  T E+L      +  A+  FD +  L   N +FV L       +  
Sbjct: 373 IDITEQKQAQLELGRTMEVLQATLDTMPNALIAFDADNRLMAWNSAFVSL-------VGV 425

Query: 349 NPSNDELLEFLRSANK--LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
            P   E    LR   K  L +  + +T    +F            W   +G+   V+   
Sbjct: 426 EPERFERGRPLRGLTKDVLAKLPSTETGIRPMFLHIARRSPADFEWRRNDGEIYAVLGRP 485

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            P GG + +F N+T +   + +           ++ +SEG A+F  +  + L N  +R +
Sbjct: 486 MPNGGYVTLFRNVTTERRAQVRAAQFEHRLSNALELMSEGFALFDANDILILCNETYRRM 545

Query: 467 WKTEENRLSPGTH----IRNIAATCSRYYNESDGWDLFAAIITSFDD---ERKSL----- 514
           +      + PG      +R+ AAT             F A +   ++   ER  L     
Sbjct: 546 YGKSTAYIRPGRRFVDIVRDAAATGQ-----------FPAAVGREEEWVAERLELHRNPP 594

Query: 515 -QGTLELLSDS-VLEYSIIPLPNAQTMLTFVNVTDSVRAE-----------------RAL 555
            Q TL+ L+D  VL  +     +  ++    ++T+ VR E                 R L
Sbjct: 595 DQPTLQALADGRVLLVAENRTSDGGSVGIRSDITERVRTENDLRAARDELEEQAQSLRDL 654

Query: 556 TEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E+ +A R    +A   K+ F+  +S+ELR+P+T ++G  +L   ++   L+ +Q  YV 
Sbjct: 655 AEQIDAARLRAEEAGAAKSRFLAVMSHELRTPMTGLLGMIELASRTE---LSKEQQGYVR 711

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S+  LL L+NDILD + ++AG ++L   T     ++ +V      +     + ++ 
Sbjct: 712 IMRDSAETLLALLNDILDFSKLEAGKVQLEEITFAPEQIIGDVFGLFQAQASAKGLVLEA 771

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF---SVKNN 726
                + ++V  D  R+ QI S ++SNA+ F++KG  TV L A       +     V + 
Sbjct: 772 DLRPSVPAWVRGDPLRVKQILSNLISNAIKFTTKGRITVRLGATEGPSGLVRLQGEVIDT 831

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I   + + +F  F        R+  G GLGL+I        GG +++ S
Sbjct: 832 GQGIAAGVLEHLFQAFEQGDSSTTRQFGGTGLGLAISRRLAEGMGGSITVES 883


>gi|146280700|ref|YP_001170853.1| two-component system sensor protein [Pseudomonas stutzeri A1501]
 gi|145568905|gb|ABP78011.1| two-component system sensor protein [Pseudomonas stutzeri A1501]
 gi|327478968|gb|AEA82278.1| two-component system sensor protein [Pseudomonas stutzeri DSM 4166]
          Length = 289

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + E LR+A E+K+ F+ ++S+E R+PL +I+  T LL     G L+ +Q + V ++S
Sbjct: 42  LDTQAEQLRQASELKSRFLSYMSHEFRTPLGSILSITRLLSDELDGPLSPEQHKQVRFVS 101

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++++ L  +V+D+LDLA ++AG + ++ +   + DL + ++      +  + + +     
Sbjct: 102 SAASELSEMVDDLLDLAKIEAGRVSISPAWFDMLDLFSALRGMFRPIVEGSPVDLIFEEP 161

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L  F  D ++L QI    +SNA+ F+++G   +           F+V + G  I   +
Sbjct: 162 QGLPRFYTDDKKLAQILRNFISNALKFTTQGEVRVSARMETPQQVRFAVTDTGIGIAPQL 221

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +F  F  V +  + + RG GLGL++ + F  L GG V + S
Sbjct: 222 HDRLFEDFAQVDSPLQKRLRGTGLGLALCKRFAELLGGRVGLQS 265


>gi|116696021|ref|YP_841597.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530520|emb|CAJ96867.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 1106

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 6/245 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  +    +VTD+ R+E  L E   A   A+  K+SF+  +S+E+R+PL  ++G  +LL
Sbjct: 484 RAAVLRALNDVTDARRSEARLREAIRAADAANHAKSSFLATMSHEIRTPLNGMLGSIELL 543

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++L   +S+Q   +  +  +S  L+ ++ND+LD + ++AG M L      + +++ +V
Sbjct: 544 GLTRL---DSRQRDQLAVMQHASQSLIYIINDVLDFSKIEAGQMSLQLRPCRVEEIVEDV 600

Query: 655 KQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +  A +     +R+  ++D  L    +AD  +L QI + ++SNA+ F+ +G  ++    
Sbjct: 601 TRRFAAEAARKQLRLLCVNDPSLVEPVMADVVKLEQILNNLVSNAVKFTEQGKVIVTAMR 660

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           +  G     V + G  I     + +F  FV       R   G GLGLSI    + L  G 
Sbjct: 661 KPGGGVEIRVIDTGIGIAARDQRRLFEPFVQAEQPDTRHYGGTGLGLSICRRLVGLMSGE 720

Query: 772 VSISS 776
           + + S
Sbjct: 721 IRLVS 725


>gi|163794545|ref|ZP_02188516.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180269|gb|EDP64792.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 509

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 8/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER   E  +A   A++ K+ F+  +S+ELR+PL  IIGF++L+ +   G L  +Q  Y +
Sbjct: 240 ERMAVEGQKAAEAANQAKSEFLAMMSHELRTPLNAIIGFSELMASGLHGPLPPRQHGYAK 299

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++ +ILDLA  ++  + L    I L  ++    + IA +  E   R++V
Sbjct: 300 DIQQSGRHLLNVIGNILDLAEAESKQINLFEVDIELEAVIEPCLRLIAPQASEG--RVQV 357

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSS 729
            +    G   + D  +L Q    +LSNA+ F+  G TV +  + + +G    +V + G  
Sbjct: 358 TATLPTGVRLLCDVTKLRQTLLNLLSNAVKFTDPGGTVRVSVSVQGDGLLDITVADTGIG 417

Query: 730 I-PEDMCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           I PED+ + +  F +  S  HR  R G GLGL + ++    HGG + ++S     TT   
Sbjct: 418 IRPEDVPRILKRFEQVESQMHR-SREGAGLGLPLAKALTEAHGGVLEVTSDFGHGTTARI 476

Query: 787 RIPS 790
            +P+
Sbjct: 477 ILPA 480


>gi|266619432|ref|ZP_06112367.1| sensory box sensor histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288869024|gb|EFD01323.1| sensory box sensor histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 502

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 15/228 (6%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK EA  +A   K +F+  +S+ELR+P+  ++G  +L   ++    N ++   +  + AS
Sbjct: 116 EKAEAENRA---KGAFLSRMSHELRTPMNAVVGLAELAGMTEGVPENVRE--MLVKLRAS 170

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LL+L+NDILD++ +D+G+++       L +LL E++  + T+  +  +  ++ +D  
Sbjct: 171 SHYLLDLINDILDMSRLDSGMLETASEPFSLEELLGELRTMMETEAGKRGLICEMEADVD 230

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSI- 730
                 D  RL Q+   +LSNA  F+ +G TV L+     G     DF F V + G  I 
Sbjct: 231 HSRVTGDSIRLRQVLMNLLSNAFKFTPEGGTVTLRVTEKTGVNGSADFDFRVTDTGVGIA 290

Query: 731 PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           PED  +    F +  +N  R Q  G GLGL I  S + L GG + + S
Sbjct: 291 PEDQERIFDTFEQMGTNYSRSQ--GTGLGLPISRSIVQLMGGELRVKS 336


>gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 902

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 131/255 (51%), Gaps = 11/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T    AE AL +  +A   A++ K+ F+ ++S+E+R+P+  ++G   LL+T+    L
Sbjct: 487 IDLTSRKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRTPINGVMGMLQLLETTP---L 543

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +++Q+ Y+   + ++  L  L+ DILDL+ V+AG M++  +   + D+++ V    A   
Sbjct: 544 DAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKMEIREAPFHIQDIIDSVTGLFAVTA 603

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDN 716
               + ++  ++    G  + D  R+ Q+   ++ NA+ F+ +G   +  +A      D 
Sbjct: 604 RNKGLILECRLAPDMPGILLGDEMRIRQVLFNLVGNALKFTERGRVEMDISALSAKDEDT 663

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 V + G  I ED    +F  F  V N+     +G GLGLSIV   + L  G +SI
Sbjct: 664 CRVHLCVTDTGIGIAEDRLGEIFEPFRQVENSFTRNYQGAGLGLSIVHRLVALMAGTISI 723

Query: 775 SSSDEGVTTINCRIP 789
            S+    T+++  +P
Sbjct: 724 ESAPGEGTSVHVVLP 738


>gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 765

 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 14/244 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+VT+  +    L E  EA   A  +K+ F+  +S+E+R+PL  +IG   LL  ++L  
Sbjct: 361 LVDVTERHQQSELLREAKEAAEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTEL-- 418

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + +Q +Y E I  S  +LL L+NDILD + ++AG M+L      L  L+ E    +A +
Sbjct: 419 -SDEQREYAETIDVSGNLLLALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPR 477

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDF 719
             E N+ +   ++  +    + D QR+ Q+   ++ NA+ F+  GS  I    R+  GD 
Sbjct: 478 AREKNLSLDWQAEAAVPRRVIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREGDA 537

Query: 720 IF---SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           +    +V + G  I P +M + +F  F S A     R   G GLGL+I +  ++  GG V
Sbjct: 538 LLLEVAVADTGIGISPGEMMR-IFEPF-SQADASTTRQYGGTGLGLAICKRLVDRMGGTV 595

Query: 773 SISS 776
            + S
Sbjct: 596 VVKS 599


>gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509]
          Length = 708

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 198 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 257

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 258 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 314

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 315 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 372

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 373 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 432

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 433 VDSEPGMGSQFTVRIP 448


>gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2]
 gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2]
          Length = 609

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 156/348 (44%), Gaps = 43/348 (12%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           ++S+GV      GR+ L N    ++    EN ++ G HI                     
Sbjct: 270 NMSDGVVATDDHGRVILVNRRASAMLGVNENEMT-GRHI--------------------- 307

Query: 502 AIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           A++   D E      T  L S S       + P    + ++  V  T   R E  +T   
Sbjct: 308 AVLLGIDPEE-----TEALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTI 362

Query: 560 EALRKADE------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVE 611
             L+   E       +  FV +VS+ELR+PLT I  + + L     G++   Q   ++V 
Sbjct: 363 AVLQDVTEQEEMETTRREFVANVSHELRTPLTTIRSYAEALDD---GAMAEPQLAERFVG 419

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   +  ++ LV D+L L+ +D+    L      + ++L+EV    + +M EN+IR  +
Sbjct: 420 VIRNETERMIRLVTDLLHLSRLDSNEAPLRMQPADVMEMLDEVADRFSFQMKENHIRSGM 479

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSI 730
             +  +G  V DR ++ Q+   ++SNA+ ++ +G ++ ++A R+N G    SV++ G  I
Sbjct: 480 FVEQGIGKVVIDRDQIDQVLDNLMSNALKYTPEGGSIRIEARRNNEGMLAISVQDTGIGI 539

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P+     +F RF  V  A      G GLGLSI    +  HGG + + S
Sbjct: 540 PKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLES 587


>gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 1136

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 2/227 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R + EKN  L +AD +K+ F+ + S+ELR+PL  IIG  + L+   +G +   Q+  +  
Sbjct: 419 RQIGEKNAKLEEADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDMLPAQASQLRL 478

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S+  L  LV+D+LD+  +  G M+L+   + +   L  V Q +      +  +  + 
Sbjct: 479 ITFSARRLSRLVDDLLDIYRIREGRMRLDLQPVDVAHALRNVLQLLQPTFQVDPAKFHLD 538

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L +  AD  R  QI   +LSNA+ +       I    R +G    +++++G  I  
Sbjct: 539 LPEDLPAVTADPVRFEQILFNLLSNAVKYGGGSEVHITAERRASGQMALAIRDHGPGIAA 598

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           D  + +F+    +     GQ  G GLGL+I     +L  G + +SS+
Sbjct: 599 DSMERIFHPLEQLMPEGSGQATGTGLGLTIARHLADLMSGSIEVSST 645


>gi|260587289|ref|ZP_05853202.1| sensor histidine kinase KdpD [Blautia hansenii DSM 20583]
 gi|260542484|gb|EEX23053.1| sensor histidine kinase KdpD [Blautia hansenii DSM 20583]
          Length = 515

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 132/245 (53%), Gaps = 10/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA  AL  KNE LR       + ++ +S++LR+PLT+I G   +L ++       KQ Q 
Sbjct: 274 RAAAALMAKNEQLRA------NLLRSISHDLRTPLTSISGNAGILISNADSMGKEKQQQL 327

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I   S  L+NLV ++L +  ++ G MKL  +  +L +++ E    +  +  ++ +R+
Sbjct: 328 YEDIYEDSLWLINLVENLLSVTRIEDGTMKLQLNAELLEEIVQEAVHHVEKRCKKHKLRV 387

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  +  L    AD + ++Q+   ++ NA+ ++ KGS ++++  ++  + + SV +NGS 
Sbjct: 388 QLSEN--LILVKADARLIVQVLVNLVDNAVKYTPKGSEILIETRQEGTNAVVSVSDNGSG 445

Query: 730 IPEDMCKSVFNRFVS-NAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  + +F  F + N+H    RR + LGL++ +S ++ HGG + +             
Sbjct: 446 ISDEAKEYIFEMFYTGNSHAADSRRSLWLGLALCKSILHAHGGDIFVEDCQPHGARFTFT 505

Query: 788 IPSKE 792
           +P+KE
Sbjct: 506 LPAKE 510


>gi|152964304|ref|YP_001360088.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
 gi|151358821|gb|ABS01824.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
          Length = 492

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 11/243 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++T   V  SV   R  TE+     + +E+K  F   VS+ELR+PLT I     L+ + 
Sbjct: 231 PLITGEEVVGSVLTVRDATEQE----RVEELKRQFTAVVSHELRTPLTAIKASLRLVTSG 286

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            LG L  + ++ +     ++  L  LVNDILD+  +DAG M L    + L DL     + 
Sbjct: 287 VLGPLPEEPARLLRIADENADRLAALVNDILDVERLDAGTMPLEPEDVDLADLARAGVEQ 346

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           + +      + + V+ +       AD  R+ Q  + ++ NA+ FS  G  V +   R   
Sbjct: 347 LESTAVAAGVEL-VLGEVGPARVHADPHRIAQALTNLVGNAVKFSEAGGRVEVTCRRTAR 405

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +   +V++ G  IP D  ++VF+RF     S+A R  + G GLGL+I +  +   GG V 
Sbjct: 406 EARLAVRDEGRGIPHDQLEAVFDRFRQVYASDAQR--QSGSGLGLAITKGIVERSGGRVE 463

Query: 774 ISS 776
           + S
Sbjct: 464 LRS 466


>gi|319900255|ref|YP_004159983.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319415286|gb|ADV42397.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 700

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 6/241 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +++ L +  E   KA  +K  F+Q +S+E+R+PL +I+GF+ ++  S +   N    ++ 
Sbjct: 461 SQKELLQAKELAEKASNMKTEFIQSMSHEIRTPLNSIVGFSQII--SSMSKDNDDTKEFA 518

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I   S  LL+LV+D+LD+A +D+G      + +    +  +    IA  +    + + 
Sbjct: 519 EIIEQGSNNLLHLVDDVLDIANLDSGTEIETNTGVDATAICRQCVADIAPHLRP-CVSLN 577

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           + ++ +   F ++  RL QI   +L NA  F+ KG  +ILK A+D     F+V + G  I
Sbjct: 578 LHTESEEFYFYSNPMRLSQILLHLLRNAAKFTEKGE-IILKWAQDKEHIFFTVTDTGIGI 636

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           P+D  + VF RF       Q  G GLGLSI  +  +  GG +++ SS  G       +P 
Sbjct: 637 PKDKQEFVFERFTKINTFAQ--GTGLGLSIGRTCADRMGGSLTLDSSYTGGCRFVLTLPL 694

Query: 791 K 791
           K
Sbjct: 695 K 695


>gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1082

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 42/359 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           IDH+++G+ V   +G+I  +NPA  +L+   +        IR     CS  ++     D+
Sbjct: 485 IDHIADGLLVTDAEGKITRTNPALANLFALGD------LDIR--GKLCSEAFS----GDV 532

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLE------YSIIPLPNAQTMLTFVNVTDSVRAER 553
              ++ S      + QG ++L  D + +         +  P+    L ++    SV   R
Sbjct: 533 LNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVLKQVSSPSGSEELIYIG---SVVLFR 589

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--------------SKL 599
            +T + E     D +K  F+  VS+ELR+PLT+++GF  L++               +K+
Sbjct: 590 DITAEKEI----DRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVILPFIKTDDTKI 645

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               ++ +  V+ I +    L NL+ND+LD+A ++AG  + +   + +  ++     +  
Sbjct: 646 NRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIKTVVERAISATT 705

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  +   I++ V     L   + D  +L+Q+F  ++SNA+ F+  G+ V LK        
Sbjct: 706 SLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTETGN-VTLKLMAVKSAI 764

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             SVK+ G  I     + VF +F  V N    + +G GLGL I +  I  HGG + + S
Sbjct: 765 KVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQHHGGSIWVES 823


>gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 758

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 17/251 (6%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
           ++ L +   A RKADE    K+ F+ H+S+E+R+PLT I+G  +L     +G+  N    
Sbjct: 367 KQTLLQLQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAEL----AIGNPGNPGVQ 422

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I  S   LL+++NDILD + V+AG ++L  +      +L          + E  +
Sbjct: 423 EYLTLIRQSGQNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIREKGV 482

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI-- 720
            + ++   +L  + V D  R+ QIF  ++ NA+ F+ KG   +    L +  ++   +  
Sbjct: 483 TLSLVLAEELPQAVVGDENRIRQIFFNLVGNAVKFTEKGKIELRLTGLTSEENSARMMLH 542

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F + ++G  IP D   S+F RF   A    R  +G GLGL+IV+  I   GG + + S++
Sbjct: 543 FEIMDSGCGIPADKQDSIFERFTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVRSTE 602

Query: 779 EGVTTINCRIP 789
              TT    IP
Sbjct: 603 GVGTTFFFNIP 613


>gi|78484412|ref|YP_390337.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira
           crunogena XCL-2]
 gi|78362698|gb|ABB40663.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira
           crunogena XCL-2]
          Length = 721

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 11/231 (4%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           + E N+A ++AD   ++K+ F+ ++S+E+R+P+  IIG T LL  +   SL  +Q     
Sbjct: 200 IKELNQAKQEADASNQLKSEFLANMSHEIRTPMNGIIGMTGLLLDT---SLKKEQRDLTL 256

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S+  LL ++NDILD + ++AG M+LNY ++ L   L+ V + +A+      + +  
Sbjct: 257 TVKESAESLLAIINDILDFSKIEAGKMELNYESVKLVPFLDGVMEMVASSAQSKGLNLAY 316

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGS 728
             D  L + +  D  RL Q+   +LSN + F+  G   +  +A   D+    F V + G 
Sbjct: 317 FIDPILPAEIETDGVRLRQVLINLLSNGIKFTDHGYVYLTVSALDSDSNRLQFKVTDTGI 376

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            I E+    +FN F        R   G GLGL+I +  ++L GGH+S+ S+
Sbjct: 377 GISEEGQAKLFNAFSQVDGSSMRVFGGTGLGLTISKQILSLLGGHISVKSA 427


>gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1066

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 20/231 (8%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +NEA   A+  K+ F+  +S+E+R+P+  IIG TDL   + +G  +SK S Y+ +I  S+
Sbjct: 669 RNEA-EVANHAKSEFLAAMSHEIRTPMNGIIGMTDL---ALMGGCDSKASSYLGFIKESA 724

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+NDILDL+ V++G M+L      L   L  + Q +        + +      ++
Sbjct: 725 HSLLELINDILDLSKVESGRMELEKKAFDLRKSLESLLQPLRLSAQRKGVELSWYVGPEV 784

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------FIF 721
               + D  RL Q+F+ ++ NA+ F+S GS  I     +  D                  
Sbjct: 785 PELLMGDDLRLRQVFTNLVGNALKFTSWGSITIAIGVAEAADSRKTPEPGASQEEISLQA 844

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +V + G  IP D  + VF  F +  H  +  G GLGL+I +  + + GG +
Sbjct: 845 TVSDTGIGIPPDKLQHVFESFATLGHDKEYGGTGLGLAITKKLVEIMGGTI 895


>gi|223937564|ref|ZP_03629467.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893727|gb|EEF60185.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 616

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 113/219 (51%), Gaps = 8/219 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            R  D+ K + V  VS+E+R+PLT++     LL    +G L  KQS+ +E     S  LL
Sbjct: 376 FRLLDDAKTNLVATVSHEIRTPLTSVRMVLHLLLEKTVGVLTPKQSELIETARDDSERLL 435

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKVISDGKLGS 679
            ++ND+LDL  ++ G   L        +L+  +   +  A    E N+  +V  D +L  
Sbjct: 436 RILNDLLDLTRLEQGNSDLYKEKTSPAELVRHINDIVHDAAAARELNLVCEV--DPELPL 493

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSV 738
              DRQR+  +F+ +L+NA+ +S  GS VI  A   D+ D  F V++ G  IPE+    +
Sbjct: 494 VWVDRQRIDHVFTNLLNNAIKYSPIGSRVIFSARWSDDFDVQFIVRDFGPGIPEEYQDHI 553

Query: 739 FNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
           F+RF      GQ + G GLGLSI    +  HGG + + S
Sbjct: 554 FDRFYRVP--GQTKTGAGLGLSIAREIVIAHGGRIGVRS 590


>gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 20/253 (7%)

Query: 542 FVNVTDSVR---AERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           FV V+D      A+R L + N  L         A+  K+ F+ ++S+E+R+P+  I+G +
Sbjct: 550 FVQVSDITELKAAQRKLADANAELAARTRQAESANAAKSEFLANMSHEIRTPMAAIVGLS 609

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+ S+L   N  Q   +  +  +S  L+ +++D+LDL+ ++AG ++++ S   L  LL
Sbjct: 610 HLLENSRL---NPDQQDLLRKMRGASKSLMAVIDDVLDLSKIEAGELRIDRSAFSLQALL 666

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++++  +A   H+  + + +  D  L   +  D  RL Q+ + +LSNA+ F++ G  ++ 
Sbjct: 667 DDLRGLMALSAHDRTLELVMRCDAGLPDQLDGDLMRLRQVLNNLLSNALKFTTVGEVLLQ 726

Query: 711 KA--ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
            A  AR +G     F+V+++G  I       +F  F        RR  G GLGL I    
Sbjct: 727 VALVARQSGRLRLRFTVRDSGIGISAAEQARLFRPFAQVDASTTRRYGGTGLGLVISRRL 786

Query: 765 INLHGGHVSISSS 777
           + L GG +S+ S+
Sbjct: 787 VRLMGGDISLRSA 799


>gi|163793613|ref|ZP_02187588.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181415|gb|EDP65930.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 649

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 18/251 (7%)

Query: 553 RALTEKNEALRKADEIKNS----FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           RA  E  EALR+A EI N     F+  VS+ELR+PL  IIGF+DLL     G L  ++ +
Sbjct: 389 RAQRELQEALRQA-EIANRSKSLFLATVSHELRTPLNAIIGFSDLLAQKVFGPLGDERYE 447

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I  S   LL+L+ D+LDL+ ++ G ++L    +   DL  E++ ++A        
Sbjct: 448 GYAHDIQTSGQHLLSLIEDVLDLSRIEMGQIRLRLGLV---DLPIEIQAAVAMVRARRGQ 504

Query: 668 RIKVI----SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            I  I    ++G   +  AD + + QI   ++SNA  F+     +++ A   +     +V
Sbjct: 505 EIASIQIEVAEG-FPTLNADARLIRQILINLISNAAKFTPPSGRILVTAQVVDDGISIAV 563

Query: 724 KNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            ++G  I P D  K V   F    +R  RR  GVGLGL + ++F+ +H G + + S+   
Sbjct: 564 IDDGIGIDPADHAK-VLRPFEQADNRLSRRYEGVGLGLPLTKAFVEVHNGQLQLESAIGE 622

Query: 781 VTTINCRIPSK 791
            TTI  R+P +
Sbjct: 623 GTTITIRLPKE 633



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 15/269 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           T+   +    E L++  V +A+FD+   L F N  F E+++   A +    + + LL F 
Sbjct: 6   TLPPDIAPLIEALNHADVGLAVFDRKSVLLFCNSRFQEIFDYPEALVTPGTTREALLRFD 65

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-EN 418
               +L         +E +  V    E H+      +G+ + V+    P GG +  + E 
Sbjct: 66  AERGELGPGNVDDLVREQLERVQYHIE-HQIELTRSSGRQIKVVNRPLPSGGNVSTYHER 124

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L  +  L     T   +Q + +D+  +G+ V+    R+  +N   R + + E   L PG 
Sbjct: 125 LDDRKSLLGADLTFEALQ-QALDYAPDGLRVWDAKDRLIYANARIRRVSEAEGTPLRPGM 183

Query: 479 ----HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-- 532
               HIR  A        E++  D  A +    +  R   +     L D    + +I   
Sbjct: 184 TFEEHIR--ARVAKNLVAEAEA-DPEAYVQQRLEMHRLGGRSYTTRLRDG--RWVVIRDH 238

Query: 533 -LPNAQTMLTFVNVTDSVRAERALTEKNE 560
            LP+  T+ T  ++TD  R E+A  E  +
Sbjct: 239 RLPDGGTVTTSQDITDIKRVEQAYRESEQ 267


>gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 900

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 13/231 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    EA   A   K+ F+ ++S+E+R+P+  IIG +++L    L  L   Q Q +E
Sbjct: 483 EKELYHAREAAETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPDL---QRQQLE 539

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  L+ ++NDILD + ++AG  +L      L +LLNEV Q +       N+R+ +
Sbjct: 540 LIHRSAIRLMIIINDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPTAQRKNLRLHL 599

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NGD-FIFSV 723
           I    +    V D+ +++Q+ + ++ N++ F+ KG   +  + +       NGD  +F V
Sbjct: 600 IVAPNVPDMLVGDQTKIMQVLTNLIDNSLKFTRKGQITLTVSNQPSPNSFANGDMLLFEV 659

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            + G  I       VF  F    ++H  +  G GLGLSI +  + L GG +
Sbjct: 660 ADTGIGIAPTYYDKVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGGRI 710


>gi|167623448|ref|YP_001673742.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
 gi|167353470|gb|ABZ76083.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 1180

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 26/288 (9%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E ++IP+     ML    + D  R    E  L    E   +  E K+ F+  +S+E+RS
Sbjct: 451 VEVTLIPVQLGSEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRS 510

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++G  DL+  S+L   N +Q  Y      + T LL+ +NDILD + ++AG M L  
Sbjct: 511 PLNAVLGSVDLILDSRL---NKEQRIYANTAKEAGTSLLSTINDILDFSKIEAGQMVLEE 567

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
           S      L  +V Q ++ K  +  I + ++ +  +  S V D QRL Q+   ++ NA+ F
Sbjct: 568 SAFSPAKLATQVLQVLSPKAQDKGIVLAIMVNRNVPESLVGDGQRLRQVLHNLIDNAIKF 627

Query: 702 SSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           S  G   I    A  D       + + G  I E    ++F  F  V ++H     G GLG
Sbjct: 628 SFGGCVAIEMWLADTDEARLCCKISDQGIGISEQALPTLFEEFSQVHDSHNTNYSGTGLG 687

Query: 758 LSIVESFINLHGGHVSISSS---------------DEGVTTINCRIPS 790
           L+I    I   GG +++ S                DE   +I+  +P+
Sbjct: 688 LAICAELIAQMGGQIAVKSQQGKGSCFSFDLLLKRDESANSIDTPVPA 735


>gi|158340478|ref|YP_001521472.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158310719|gb|ABW32333.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 929

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 132/252 (52%), Gaps = 23/252 (9%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           KN+A   A++ K++F+ ++S+ELR+PL  I+GF+ LL   +  +L+ KQ+  +  I+ S 
Sbjct: 409 KNKA-EAANQAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLSQKQN--LNSINRSG 465

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           + LLNL+ND+L+++ ++AG + LN +   L  LL+ +++  A K     + + +    K+
Sbjct: 466 SHLLNLINDVLEMSKIEAGKISLNPTNCDLLLLLDSLQEMFALKAKSKGLVLNIQKSSKI 525

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-----------KAARDNGD------- 718
             ++  D  RL Q+   +L+NA+ F+  GS  +             A     D       
Sbjct: 526 PLYIYIDENRLRQVLINLLTNALKFTESGSVTLRVSTQAISLPEESATHPQNDTTQPSLS 585

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSS 777
             F V++ G  I ED    +F+ F+  +   Q + G GLGL+I   F+NL  G + + S 
Sbjct: 586 LYFEVEDTGIGIAEDELDDIFDAFIQTSSGQQSQEGTGLGLAICHHFVNLMQGDIQLQSR 645

Query: 778 DEGVTTINCRIP 789
               TT+  +IP
Sbjct: 646 QGQGTTVFMQIP 657


>gi|16124393|ref|NP_418957.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221233076|ref|YP_002515512.1| hybrid two-component histidine kinase/receiver protein ShkA
           [Caulobacter crescentus NA1000]
 gi|13421249|gb|AAK22125.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|78057838|gb|ABB17331.1| hybrid kinase [Caulobacter crescentus CB15]
 gi|220962248|gb|ACL93604.1| hybrid two-component histidine kinase/receiver protein ShkA
           [Caulobacter crescentus NA1000]
          Length = 514

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 5/188 (2%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E R+PL  ++G   LL+ +KL    ++Q  YV  +  S   LL+LVND+L  A + A
Sbjct: 21  LSHEFRTPLNGVLGMARLLENTKL---TAEQRSYVTALRESGDHLLSLVNDVLHFARLGA 77

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             ++L+ + + +  LL +V + ++ + HE  I I       L + +AD  RL QI     
Sbjct: 78  AAIELSLAPVDIEGLLRQVAELMSPRAHEKGIEIAWAVSSPLPTILADEGRLRQILLNFA 137

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRG 753
            NA+ F+  G  ++  +A D G   FSV + G  +  D    +F  FV     H  Q  G
Sbjct: 138 GNAVKFTEAGGVLLTASAIDGGRVRFSVADTGPGVAPDARARIFEAFVQTDVTHATQLGG 197

Query: 754 VGLGLSIV 761
            GLGL+IV
Sbjct: 198 AGLGLAIV 205


>gi|323491190|ref|ZP_08096376.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG
           20546]
 gi|323314558|gb|EGA67636.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG
           20546]
          Length = 929

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT+    L + Q+ Y++ I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTT----LTNSQTDYLQTIEKSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
           N++NDILD + ++AG + L          L EV    AT  HE  + + +  D K+    
Sbjct: 340 NIINDILDFSKLEAGKLALENIPFDFQGSLEEVVSLQATSAHEKGLELTLKIDPKIPAGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN-GDFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V +++ +D+  +  F V++ G  I E    
Sbjct: 400 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQKDDLVELQFMVRDTGIGISERQQS 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501


>gi|53711829|ref|YP_097821.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52214694|dbj|BAD47287.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 411

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 132/248 (53%), Gaps = 20/248 (8%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q +LT  ++T+    +R L  + E    A+++K++F+ ++S+E+R+PL  I+GF+ LL +
Sbjct: 160 QMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS 219

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +     ++++  Y++ ++ ++  LL +V D+LDL+ +++G +  +YS   +NDLL  +  
Sbjct: 220 A---DDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHG 276

Query: 657 SIATKMHENNIRIKVISDGKLGS--------FVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +       NIR+K   + KL            +++ R++QI + ++ NAM F+  G   
Sbjct: 277 IL-------NIRLKDKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSGEIC 329

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                +   +  F V + G  IP      +F+RF    H  +  G GLGL++ ++ +   
Sbjct: 330 FGCRPQGEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQNL 387

Query: 769 GGHVSISS 776
           GG + + S
Sbjct: 388 GGEMGVES 395


>gi|307545605|ref|YP_003898084.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
 gi|307217629|emb|CBV42899.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
          Length = 911

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 124/226 (54%), Gaps = 11/226 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+E+R+PL  IIGF  LL  S+L   N++Q ++++++  +   LL LV
Sbjct: 260 ANRAKSEFLANMSHEIRTPLNGIIGFCRLLHRSEL---NARQREWLDHVRRACDNLLMLV 316

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVAD 683
           ND+LD + ++AG ++L +  + +  L++EV    A +  + N+++  ++ D   G    D
Sbjct: 317 NDVLDFSKIEAGRLELEHRPLDMVALVDEVLGLQAPQAQQKNLQLLGLVYDDVPGELFGD 376

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
             R+ Q+ + ++ NA+ F+ +G  ++  +  D          SV + G  + +   + +F
Sbjct: 377 PLRIRQVLTNLVHNAVKFTDRGEVIVRVSVEDTSHNQTTLNVSVSDTGIGLSQACQRQLF 436

Query: 740 NRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
           + F     +H+ Q  G GLGL+I    +   GG +S+ S S +G T
Sbjct: 437 DAFRQGETSHQRQFGGTGLGLAICRQLVEQMGGEISVDSESGQGST 482


>gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 597

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 182/395 (46%), Gaps = 33/395 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNP 461
           I+T++  GG    F  +  ++          K Q  +I   +++GV  F  DG I ++NP
Sbjct: 225 ILTNDEIGGLAMAFNQMGRRLQFNINALNQEKEQLASILSSMADGVITFNRDGEILITNP 284

Query: 462 A---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
               F   W  E+     G     +A    +        +LFA ++   +++ +S + TL
Sbjct: 285 PAERFLQAWYFEQ-----GNDAEAMAPLPPQVK------ELFARVVR--EEKEQSTEVTL 331

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +  +  +L   + PL   +TM     V  +V   R +TE+    R+ D+++  F+ +VS+
Sbjct: 332 QGRTWVIL---MTPL-YGKTM-----VRGAVAVLRDMTEE----RRLDKLRKDFIANVSH 378

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+  + G+++ +    + +   ++ +  + I   S  +  LVND+LDLA ++AG +
Sbjct: 379 ELRTPIAMLQGYSEAI-IDDIAASEEEKKEMAKVIYDESLRMGRLVNDLLDLARMEAGHI 437

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L Y  + L   +  V +       E  I +      +      D  R+ Q+ + ++ NA
Sbjct: 438 ELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIALDPDRIEQVLTNLIDNA 497

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           +  +  G TV L            V+++GS IPE+    VF RF     A    R G GL
Sbjct: 498 IRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDLPFVFERFYKADKARTRSRSGTGL 557

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL+I ++ +  H G +++ S     TT +  +P++
Sbjct: 558 GLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592


>gi|91216331|ref|ZP_01253298.1| sensory box histidine kinase/response regulator [Psychroflexus
           torquis ATCC 700755]
 gi|91185469|gb|EAS71845.1| sensory box histidine kinase/response regulator [Psychroflexus
           torquis ATCC 700755]
          Length = 1325

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 129/243 (53%), Gaps = 10/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+  R E+ L +      KA + K+ FV ++S+E+R+PL  +IGF+DLL  +   
Sbjct: 663 TIQDITEQKRFEKKLEKSKVEAIKASQAKSEFVANMSHEIRTPLNGVIGFSDLLMKT--- 719

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN  Q +Y++ +  S+  LL+L+ND+L+ + +++G ++L+     L  L+NEV      
Sbjct: 720 PLNEVQHKYMKTVFQSANTLLDLINDVLNFSKIESGKLQLDIEKTSLIKLVNEVVDLTKY 779

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN 716
             H+  +   ++ + K+  ++  D  RL QI   ++SNA+ F+ +G     V  K   +N
Sbjct: 780 DAHKKGLEFVLVIEDKIPDYIWIDGVRLKQILMNLISNAIKFTHRGYVKLKVHFKNKTNN 839

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              I FSV++ G  I +   K +FN F+       ++  G GLGLSI    + L    + 
Sbjct: 840 LTTISFSVEDKGIGIAKGNQKKIFNAFIQEDASVTKKYGGTGLGLSISGKILGLMNSKLK 899

Query: 774 ISS 776
           + S
Sbjct: 900 LKS 902


>gi|313674518|ref|YP_004052514.1| pas/pac sensor hybrid histidine kinase [Marivirga tractuosa DSM
           4126]
 gi|312941216|gb|ADR20406.1| PAS/PAC sensor hybrid histidine kinase [Marivirga tractuosa DSM
           4126]
          Length = 1296

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 10/253 (3%)

Query: 530 IIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           II   +AQ  ++TF ++++ V++E+ L E  ++   A++ K++F+ ++S+E+R+PL  +I
Sbjct: 626 IIEEEDAQWALVTFNDISNRVKSEKQLLEAKKSAEAANQAKSTFLANMSHEIRTPLNGVI 685

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLL+ + L  L   Q+ Y ++I  S+  LL ++NDILD + ++AG +KL    I   
Sbjct: 686 GFSDLLRKTNLNIL---QTDYTQHIYNSAHSLLGIINDILDFSKIEAGKLKLQMEEINGL 742

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +L+      I  +  + N+ + +  D  +   F AD  RL QI   +L NA+ F+  G+ 
Sbjct: 743 ELVESAVSFITFQASQKNLELLIEYDPDVPIYFEADELRLRQILINLLGNAVKFTESGN- 801

Query: 708 VILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
           + LK  +        F V + G  I     K++F  F        R+  G GLGL+I   
Sbjct: 802 IALKVTKLHKEDKLKFEVIDTGIGISAKQQKNIFRAFEQADVSTTRKFGGSGLGLTISNK 861

Query: 764 FINLHGGHVSISS 776
            + +    + + S
Sbjct: 862 LLKMMQSRLHLES 874


>gi|146298400|ref|YP_001192991.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146152818|gb|ABQ03672.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 813

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +   +  VS++L++PL+ I+G+++LL  S    +N+KQS +++ I  SS  +  LV D+L
Sbjct: 323 REQLISTVSHDLKTPLSTIVGYSELLGNS---DINTKQSYFIKNIKNSSEYITQLVQDLL 379

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D + ++AG + +      L +++ +  ++I T   + NI + +  D KL +  V D  RL
Sbjct: 380 DFSRIEAGKITIEKVPFFLPEIIEDTARNIQTVYKQKNIDLIINVDEKLNTRVVGDPFRL 439

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            QI S I+ NA  F+ +G   I     +N + F+ ++++ G  I +   K VF  F    
Sbjct: 440 KQILSNIIGNAYKFTEEGHIKISSYVSENENFFVITIEDTGIGIEKGNLKLVFEEFAQAN 499

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +++  G GLGLSI +  I+  GG +S+ S+    +T   ++P
Sbjct: 500 ENIEKKYGGTGLGLSICQKIISFMGGRISLESTFGKGSTFEIKVP 544


>gi|312886118|ref|ZP_07745738.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301400|gb|EFQ78449.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 559

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 1/218 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ DE K +F+  +S+EL++P+++I     LL+ +++G +NS+Q Q ++ I   +  LL
Sbjct: 329 FQQLDEAKTNFIATISHELKTPISSIKMSLKLLEDARIGDVNSEQRQLLQNIDDDTRRLL 388

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +  ++LDLA V+ G + LN+      +++N   Q++     +  I IK+     L    
Sbjct: 389 QITGELLDLAQVETGKINLNFGNTHPQNIVNYAVQAVKFIADQKQITIKINCPDSLPDVQ 448

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  +   +   +LSNA+ +S+  ST+ L   R      FSVK+ G  I       +F R
Sbjct: 449 ADLDKTTWVLINLLSNAVKYSASKSTIELTVKRHKDMLEFSVKDYGQGIDARYLSRIFER 508

Query: 742 FVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +      G  + G GLGL+I + FI   GG + + S +
Sbjct: 509 YFKVPGAGLDKTGTGLGLAIAKDFIEAQGGKIGVESQE 546


>gi|298241118|ref|ZP_06964925.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554172|gb|EFH88036.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 938

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 120/235 (51%), Gaps = 5/235 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+SF+   S+ELR+PL ++   T L++       + + +  +  +     
Sbjct: 690 NSARKELEQRKDSFISMASHELRNPLASLKMQTQLVRKRLEKQTHHEAAALLSRVEGPVK 749

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      
Sbjct: 750 QLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTMQQLSPTHTI---VVRGAVPC 806

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S V D+ RL Q F+ +LSNA+ +S    TV +  +      +  V+++G  IP + C  +
Sbjct: 807 SLVGDKDRLWQAFTNLLSNAIKYSPDAETVEMDLSASAEIVMIRVRDHGLGIPREQCDKI 866

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+RF   +   QR   G+G+GL IV   +  HGG + + S+    +T    +P++
Sbjct: 867 FDRFYRVSGPRQRAIPGLGMGLYIVAEIVKAHGGTIMVDSAVGKGSTFTVTLPTR 921


>gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074]
 gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1827

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1341 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1400

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1401 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1460

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  AA D  D I       
Sbjct: 1461 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAAADVPDAIREQLLEA 1520

Query: 721  ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                        FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1521 GSLADADADLIAFSVTDTGIGIASGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1580

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1581 LLGGEIHAASEPGRGSTFTLYLP 1603


>gi|170761017|ref|YP_001788882.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408006|gb|ACA56417.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 469

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 126/231 (54%), Gaps = 5/231 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +   N  Q+ Y++        
Sbjct: 239 ESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPEEN--QNYYLKLTYEEIQR 296

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L  L+ND+LDL+ ++ G +KL+   I LN+++        TK+ +  +++ V + D K+ 
Sbjct: 297 LTRLINDLLDLSAIEEGHLKLDLEEIDLNEIIRTSVIKFETKIRDKKLKVDVSLEDDKV- 355

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  K +
Sbjct: 356 YVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDIKHI 415

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++RF  ++  R  +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 416 WDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|162452466|ref|YP_001614833.1| hypothetical protein sce4190 [Sorangium cellulosum 'So ce 56']
 gi|161163048|emb|CAN94353.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1360

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 143/280 (51%), Gaps = 14/280 (5%)

Query: 523  DSVLEYSII---PLPNA-QTMLTFVNVTDSVRAERALTEK-NEALRKADEIKNSFVQHVS 577
            D V+E+ ++   PL +A + ++  + +  SV A++   E+  +A+R+ DE    F+  +S
Sbjct: 931  DGVVEWDLVTRLPLIDAARHIVGIIGIFRSVTAQKRSEEQIKDAVRRRDE----FLAMLS 986

Query: 578  YELRSPLTNIIGFTDLLK--TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            +ELR+PL  I+  T LLK   S     +    + V+ +   S  +  L++D+L+ + V  
Sbjct: 987  HELRNPLGAIVHATALLKEDCSASDGASGIDEKVVQILERQSAQMARLLDDLLEASRVTQ 1046

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
              ++L    + L  ++ +   ++   M    +   V+ D +      D  RL Q+   +L
Sbjct: 1047 NKIELRKRVLDLGSVVKDAADAVKNLMDTRGVDFSVVVDPEPIWVEGDPARLQQVHVNLL 1106

Query: 696  SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
            +NA  ++S+G  V L+A R +G  +  VK++G  IP++M  +VF  FV ++    R   G
Sbjct: 1107 NNAAKYTSRGGHVTLEAKRLDGHAVVRVKDDGVGIPKEMLDTVFELFVQSSRTLDRSAGG 1166

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPSKE 792
            +G+GL++V   +  HGG VS  S  EG       R+P  E
Sbjct: 1167 LGVGLTLVRGLVEKHGGTVSARSEGEGKGCEFEVRLPISE 1206


>gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
 gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
          Length = 953

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   ++V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 443 AICVLIDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQ 502

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L     + V  ++ SS +LL +++DILD + +++  +K+        +++  +  +
Sbjct: 503 ---GLPQGVDRLVTAMNNSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGN 559

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + +  + +    +  +  SF  D  RL Q+ S IL+NA+ F+  G  V+    R  
Sbjct: 560 YLPLVVKKRLGLYCFIEHNVPLSFNGDPVRLQQVISNILNNAIKFTDTGCIVL--NVRTC 617

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           G+++ F V++ G  IPE     +F+ F       QR  +G GLGL+I E  INL  G + 
Sbjct: 618 GNYLEFQVRDTGVGIPEREITRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIE 677

Query: 774 ISSSDEGVTTINCRIP 789
           + S     ++   RIP
Sbjct: 678 VESEPGLGSSFTVRIP 693


>gi|281355007|ref|ZP_06241501.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317887|gb|EFB01907.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1560

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 15/258 (5%)

Query: 532  PLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            PL + Q  L +V     ++T+  R ++ L +  E  + AD  K+ F+  VS+ELR+PL  
Sbjct: 1146 PLLDRQGKLMYVLTSDIDITELSRQKQELQKAMEQAQAADRAKSYFLATVSHELRTPLNA 1205

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            +IGF++LL+   + +  ++Q +Y+  IS +   LLNL+ D+LDL+ ++A  + L  +   
Sbjct: 1206 VIGFSELLQGGDVAA--AEQLEYLRSISFAGNALLNLIYDVLDLSKLEADQLNLVLADTD 1263

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
               L+ EV      K  E ++++ V           D  RL Q+   ++ NA+ F+S GS
Sbjct: 1264 AGQLVQEVVAVFRLKAMEKDLKLTVECVNLEQPLRLDNLRLRQVVLNLVGNAVKFTSAGS 1323

Query: 707  TVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQR--RGVGLGL 758
              +          + G  I  V + G  I  +  K +F+ FV   + RG     G GLGL
Sbjct: 1324 VSVRAVFQPDPGGETGMLIIRVADTGPGISPESRKKIFDPFVQGESTRGTHSYEGSGLGL 1383

Query: 759  SIVESFINLHGGHVSISS 776
            +I +  +N  GG + + S
Sbjct: 1384 AISQRLVNRMGGEIRLES 1401


>gi|228952378|ref|ZP_04114464.1| hypothetical protein bthur0006_17820 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229069549|ref|ZP_04202838.1| hypothetical protein bcere0025_17540 [Bacillus cereus F65185]
 gi|229079180|ref|ZP_04211728.1| hypothetical protein bcere0023_18390 [Bacillus cereus Rock4-2]
 gi|229190105|ref|ZP_04317109.1| hypothetical protein bcere0002_17750 [Bacillus cereus ATCC 10876]
 gi|228593328|gb|EEK51143.1| hypothetical protein bcere0002_17750 [Bacillus cereus ATCC 10876]
 gi|228704106|gb|EEL56544.1| hypothetical protein bcere0023_18390 [Bacillus cereus Rock4-2]
 gi|228713688|gb|EEL65574.1| hypothetical protein bcere0025_17540 [Bacillus cereus F65185]
 gi|228807295|gb|EEM53828.1| hypothetical protein bthur0006_17820 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 443

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRI--ELMG 337

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S + ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHEKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LHGG +S++S +   TTI  ++P
Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 442


>gi|160885983|ref|ZP_02066986.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
 gi|156108796|gb|EDO10541.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
          Length = 808

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VT++    + W F  +++ ++  E +   L ++   TI++L  G+ V       K  N  
Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506
           FR +++  E            A     Y N+  G   +D +  I+               
Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSG 379

Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +  E K   G L +L    +      L +   +    +VT+    +R L    E  
Sbjct: 380 KGMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKA 439

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +D +K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL 
Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+ILDL+ +++G ++ ++    L++L  EV  +   +  +    +   SD  L     
Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYESSDESL-MIET 555

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+ Q+ S ++ NA+ F+ +GS        DN   +F V + G+ I  +    VF RF
Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIEPEKVGRVFERF 614

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  Q  G GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659


>gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 956

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  IIGFT+LL  S    L  +Q  ++  I  SS
Sbjct: 282 RKEAL-EASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS---PLPRQQRDHLNTIRKSS 337

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
            ILL ++NDILD + ++AG + L+     L D++ EV   +A   H  N+  + ++ +  
Sbjct: 338 EILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDV 397

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729
             + + D  R+ Q+ + +++NA+ F+  G  V+L+A+ ++ D          S+ ++G  
Sbjct: 398 PDNIMGDPLRVKQVITNLVNNAIKFTQTGE-VVLRASLEDEDTEHNRVTLRLSITDSGVG 456

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +     +S+FN F        R+  G GLGL+I +  +   GG + + S
Sbjct: 457 LSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLES 505


>gi|300023279|ref|YP_003755890.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525100|gb|ADJ23569.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 614

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 132/263 (50%), Gaps = 10/263 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             +  L  ++  D +R   A  +   E   +A   K+ F   +S+E+R+PL +IIG+T L
Sbjct: 196 GGRMFLERLHALDQIRVSEAEAKMAREEAERATSAKSEFFATMSHEIRTPLNSIIGYTSL 255

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +   +   L+ + +  +  +  +   LL +VNDILD + ++AG +K   S++ L  L+  
Sbjct: 256 VLARQ--GLSREDTNDLSIVRDAGKALLAIVNDILDFSAIEAGRLKFIKSSVTLPPLIEG 313

Query: 654 VKQSIATKMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTV--- 708
                  +  E  + I+   D  L   +F AD  RL Q+   +++NA+ F+S+GS V   
Sbjct: 314 CVALFFAEGREKGLVIRSEIDPDLHDLTFTADAHRLRQVLLNLVNNAVKFTSEGSVVVGA 373

Query: 709 -ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFIN 766
            IL    ++ +  F V++ G  I  D+  ++F RF   +  R +R G GLGL+I  S + 
Sbjct: 374 KILDREENSANVRFFVRDTGPGIRADLIPNLFQRFSQLDNGRDRRGGSGLGLAICRSIVQ 433

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            +GG + I S +   +T    +P
Sbjct: 434 ANGGKIDIESHEGEGSTFWFEVP 456


>gi|254881605|ref|ZP_05254315.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642990|ref|ZP_07997624.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254834398|gb|EET14707.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385355|gb|EFV66300.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 781

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 144/271 (53%), Gaps = 21/271 (7%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++PL     ++  +  ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  
Sbjct: 380 TLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNA 439

Query: 587 IIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           I+GF+ L+  +     N++  + Y + I+ +S ILL L+NDILDLA ++AG ++     +
Sbjct: 440 IVGFSRLMTIAD----NAEDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPM 495

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDF 701
            L +L   V +     MH++ ++  V  I D K  S +   D+ R++Q+ + +++NA+ F
Sbjct: 496 DLGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKF 550

Query: 702 SSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           + KG        R+  ++I F VK+ G  I E+  K +F RFV      Q  G GLGL+I
Sbjct: 551 TFKGEIRFGFEVRE--EYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAI 606

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +   GG ++  S     +T    IP K
Sbjct: 607 CRVIVEKLGGEITAESKLNEGSTFRFTIPYK 637


>gi|172039202|ref|YP_001805703.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700656|gb|ACB53637.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 864

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A  KA+  K+ F+  +S+ELR+PL  I+G+  L+  S   SL+S     ++ I+ S   L
Sbjct: 399 AAEKANHAKSEFLASMSHELRTPLNAILGYVQLMLRST--SLSSDHRNNLQTINDSGEHL 456

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+ND+L+++ ++AG + L  +   L  LL+E++  +  K     + +  I D  +  +
Sbjct: 457 LGLINDVLEMSKIEAGQIVLKETDFDLYHLLDELETLLQLKATIKQLSLSFIRDCTVPQY 516

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  D ++L Q+   I+ NA+ F+ KG  V +K   +     F+V++ G  I ++  + +F
Sbjct: 517 IRTDEKKLRQVLINIIGNAIKFTEKGR-VTVKVWCEGHRLFFAVEDTGQGIEKEELEQLF 575

Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           + FV + A      G GLGL I   FINL GG + ++S   EG T
Sbjct: 576 SPFVQAKAGVNSGEGTGLGLPISSKFINLMGGKIMVNSVVTEGTT 620


>gi|90580330|ref|ZP_01236137.1| putative sensor histidine kinase/response regulator [Vibrio
           angustum S14]
 gi|90438632|gb|EAS63816.1| putative sensor histidine kinase/response regulator [Vibrio
           angustum S14]
          Length = 931

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     LN+ Q  Y+  I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LNTSQKDYLLTIENSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
            ++NDILD + ++AG + L        D L+EV + +A   HE  + + +  D ++    
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIPAGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ NA+ F+  G+   +V LK+  DN   + F V++ G  I E    
Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDVDNNIALQFMVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG VS++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTS 501


>gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli H736]
          Length = 708

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 198 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 257

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 258 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 314

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 315 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 372

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 373 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 432

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 433 VDSEPGMGSQFTVRIP 448


>gi|302383089|ref|YP_003818912.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193717|gb|ADL01289.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 524

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 11/225 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  +IG  D L  S+ G L   Q++ V+ I  S T L  LV+DIL
Sbjct: 151 KSDFLANMSHEIRTPLNGVIGIVDAL--SRTG-LEPAQAEMVDLIRDSGTTLERLVSDIL 207

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D++ ++AG + L      L D L      +  K  +  +   V I+    G+F+ D  RL
Sbjct: 208 DVSKIEAGKLDLELHAFDLEDALRGPIDVMRAKAADKGLAFLVDIAPEVSGTFLGDSTRL 267

Query: 688 LQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+ + +LSNA+ F+++GS V    + + A D      ++++ G    E+    +F RF 
Sbjct: 268 KQVLTNLLSNAVKFTAEGSVVLTAWVTEDAEDQTFLSLTIQDTGVGFDEEQAALLFGRFN 327

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                  RR  G GLGLSI  S + L GG +  +SS+ GV +  C
Sbjct: 328 QADSTITRRFGGTGLGLSICRSLMQLMGGEID-ASSEPGVGSRFC 371


>gi|156743358|ref|YP_001433487.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234686|gb|ABU59469.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 899

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 1/208 (0%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  K  F+  VS+ELRSPLT I G+ DLL    +G L+  Q   +E +     ++ N+V 
Sbjct: 656 DRAKTDFIATVSHELRSPLTVIYGYVDLLLRGLVGELSGDQYDLLEAVRNRVELMNNIVK 715

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +++ +A+++A  ++ + +   +  L++E    +        + + V +   L    ADR+
Sbjct: 716 NVILVASIEANTLQTDLAPQDVRRLIDETIAPMRKAFERKGLTLTVNTPDDLPPVRADRE 775

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
           +L+ I  +++ NA  ++ +G   I    RD+G     V + G  IP D    +F RF   
Sbjct: 776 QLMIILGQVIDNARRYTPQGEVAITAHRRDDGMVQIDVADTGPGIPADQMPRLFTRFFRV 835

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHV 772
             +    RG GLGL I    +  HGG V
Sbjct: 836 EGNNSPERGSGLGLVITRQLVERHGGKV 863


>gi|283850533|ref|ZP_06367821.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574104|gb|EFC22076.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 712

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 10/255 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F +VT+  +AE AL    E    A  +K+ F+ ++S+E+R+PL  I+G   LL  ++   
Sbjct: 296 FRDVTERKQAEEALQAAKEQAEAATRVKSEFLANMSHEIRTPLNGILGILQLLGHTR--- 352

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y+     SS  L  L++DILDL+ ++AG + L      + D            
Sbjct: 353 LDAEQREYLLAAIQSSHRLTRLLSDILDLSRIEAGKLALREDAFEIADQREATLGLFGMT 412

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
             E  + +    DG++    V D+ RL Q+   ++ NA+ F+ KG   +    +   +  
Sbjct: 413 AREKGLELDFRIDGRMPPRLVGDKSRLQQVLFNLVGNAIKFTEKGRVRVEVEPIGWCKGV 472

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
              +F + + G  I + M ++VF  F        R  +G GLGLSIV   + + GG ++I
Sbjct: 473 LRVLFVISDTGIGIDDAMLQAVFEPFTQAEVSYTRSFQGAGLGLSIVRKLVGIMGGELTI 532

Query: 775 SSSDEGVTTINCRIP 789
            S+    TT+ C +P
Sbjct: 533 DSTTGAGTTVYCSLP 547


>gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1186

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 136/270 (50%), Gaps = 15/270 (5%)

Query: 532  PLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            P+ N +  + +V     ++T    +E  L    E    A++ K+ F+ ++S+E+R+P+  
Sbjct: 764  PILNEEGRVEYVVELLRDITQRKESEAELQMAWEKAEAANKAKSEFLANMSHEIRTPING 823

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            I+G   LL+ +   SL+ +Q Q VE   AS+  L  L+ DILDL+ ++AG M++  +   
Sbjct: 824  IMGGLQLLEAT---SLDHEQKQLVEMGIASARRLTRLLTDILDLSRIEAGKMEIRKADFE 880

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG 705
            ++ L   ++   A    E N+RI    D +L   +A D  R+ QI   ++ NA+ F+   
Sbjct: 881  VDRLCTSIEDLFAASAAEKNVRISCTLDPRLPPILAGDDARIQQILLNLVGNALKFTHDD 940

Query: 706  STV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLS 759
            +      +L+   +    + SV ++G  I ++    +FN FV    A      G GLGLS
Sbjct: 941  TVELHWHLLRRQGNELRVLISVADSGLGISDEKLGEIFNPFVQADGAFTRNFEGAGLGLS 1000

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIP 789
            IV   + + GG++S+ S+    +T    +P
Sbjct: 1001 IVVRLVQMMGGNISVESTPGEGSTFYVSLP 1030


>gi|89893070|ref|YP_516557.1| hypothetical protein DSY0324 [Desulfitobacterium hafniense Y51]
 gi|89332518|dbj|BAE82113.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 485

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 130/242 (53%), Gaps = 11/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT+ N  L   +E+K++F+  +S+EL++PL++II FTD+ + S       +Q + V+ I 
Sbjct: 243 LTQANLELHDENEMKSNFLTIMSHELKTPLSSIIAFTDIWEKSSREKSEDEQ-RLVQEIK 301

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKV 671
            +S  LLN+VN+ +D+A ++AG  ++ Y  + L D+++    V   IA K H  ++  ++
Sbjct: 302 ENSRTLLNMVNNTIDVARLEAGRFEITYDEVELVDIVSAVVSVAHPIAVK-HNISLEKRI 360

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
             D  +   ++D + L +I   ++SNA+ F+  G  V +  +   D    +  V + G+ 
Sbjct: 361 SPDTPI--IISDWEALRKILMNLVSNALKFTGAGGKVDISVSYLSDRSRVVIQVADTGAG 418

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE     +F RF  +   G  R  G GLGL +V++     GG + + S  E  ++ +  
Sbjct: 419 IPEKDHDQIFERFTQSTQPGDERINGSGLGLFLVKTLTEKLGGEIEVDSVVERGSSFSVY 478

Query: 788 IP 789
           +P
Sbjct: 479 VP 480


>gi|309789904|ref|ZP_07684481.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308228036|gb|EFO81687.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 749

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T   E +R AD +K++F+  VS+ELR+PLT+IIG+T++L+    G L  +  + + ++  
Sbjct: 498 TRLYEEVRTADRLKSAFLATVSHELRTPLTSIIGYTEMLQRGLYGPLGERMGEPLGHMRT 557

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S  LL L+ DILD + ++AG +K++ + +     +  V      ++ + ++ + +    
Sbjct: 558 ASGTLLRLITDILDFSRMEAGHLKVDLTPVEPLRTIRSVAGQFQPQILQRSLALDLDLPD 617

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734
            L    A+  RL Q+ + ++ NA+ F+ +G   +  +A  + D +  SV++ G  I  + 
Sbjct: 618 HLPYIYANSMRLEQVLTNLIGNAIKFTDQGGITV--SAHHHADRLRISVRDTGIGIAHEH 675

Query: 735 CKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
             ++F  F      G+   G GLGL+I    + L GG + + S+  EG T
Sbjct: 676 QDAIFLEFRRIEQIGRHAGGAGLGLAISRRLVELMGGTIGLHSTPGEGST 725


>gi|46579974|ref|YP_010782.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449390|gb|AAS96041.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234028|gb|ADP86882.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1039

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 127/254 (50%), Gaps = 15/254 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF +V +  R E  L E       A+  K+ F+ ++S+E+R+PL  I G   +L  +   
Sbjct: 631 TFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLADA--- 687

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  +Q +  E    S   L +L+ D+LD++ +DAG +++      L+  + +V++    
Sbjct: 688 SLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVRELFIP 747

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----- 714
              +  + + V  D  + S  V D  RL Q+ + +L NA  F+ KGS V L+A       
Sbjct: 748 SAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEKGS-VTLRAEHLSPVL 806

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770
            ++   +FSV++ G  IP++    +F  F + A  G +R   G GLGLSI    I + GG
Sbjct: 807 ANSCRVLFSVEDTGCGIPDEKHGKLFTPF-TQACEGFKRSHQGAGLGLSICRRIIRVMGG 865

Query: 771 HVSISSSDEGVTTI 784
           H++  S     TT+
Sbjct: 866 HLAFESEAGTGTTV 879


>gi|283850587|ref|ZP_06367875.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574158|gb|EFC22130.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1093

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 19/263 (7%)

Query: 528 YSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           YS +P+     +  +   V++T+    E+AL    EA   A+  K+ F+  +S+E+R+P+
Sbjct: 676 YSAVPIQVYGESGILAVLVDITERKAMEQALRRSKEAAETANRAKSEFLSTMSHEIRTPM 735

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G   +L  S    L  K ++ +  I A+   LL L+NDILDL+ ++AG + +    
Sbjct: 736 NTILGMAGVLAAS---DLPPKHTEALRAIEAAGGTLLALLNDILDLSQIEAGGLIMEEKA 792

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSS 703
             +  L  ++   +        + +++   G L + ++    R+ Q+   +L NA+ F+ 
Sbjct: 793 CDIVALAGKLTDMMRPDAARKGLALRLDVQGTLPARLSCSPDRIRQVLVNLLGNAVKFTD 852

Query: 704 KGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGV 754
           +G  V+     D+ D       +V++ G  IP D    +F+RF      ++ H G   GV
Sbjct: 853 QGEIVLELGREDHADTGAWLRLAVRDTGIGIPADKQTVIFDRFTQVNASASRHYG---GV 909

Query: 755 GLGLSIVESFINLHGGHVSISSS 777
           GLGL+I    +++ GG + + S+
Sbjct: 910 GLGLAICNKLVHMMGGSIRVDST 932


>gi|253564117|ref|ZP_04841574.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947893|gb|EES88175.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301161586|emb|CBW21126.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis 638R]
          Length = 411

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 132/248 (53%), Gaps = 20/248 (8%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q +LT  ++T+    +R L  + E    A+++K++F+ ++S+E+R+PL  I+GF+ LL +
Sbjct: 160 QMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLAS 219

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +     ++++  Y++ ++ ++  LL +V D+LDL+ +++G +  +YS   +NDLL  +  
Sbjct: 220 A---DDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHG 276

Query: 657 SIATKMHENNIRIKVISDGKLGS--------FVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +       NIR+K   + KL            +++ R++QI + ++ NAM F+  G   
Sbjct: 277 IL-------NIRLKDKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSGEIC 329

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                +   +  F V + G  IP      +F+RF    H  +  G GLGL++ ++ +   
Sbjct: 330 FGCRPQGEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQNL 387

Query: 769 GGHVSISS 776
           GG + + S
Sbjct: 388 GGEMGVES 395


>gi|120602614|ref|YP_967014.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562843|gb|ABM28587.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1039

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 127/254 (50%), Gaps = 15/254 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF +V +  R E  L E       A+  K+ F+ ++S+E+R+PL  I G   +L  +   
Sbjct: 631 TFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLADA--- 687

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  +Q +  E    S   L +L+ D+LD++ +DAG +++      L+  + +V++    
Sbjct: 688 SLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVRELFIP 747

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----- 714
              +  + + V  D  + S  V D  RL Q+ + +L NA  F+ KGS V L+A       
Sbjct: 748 SAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEKGS-VTLRAEHLSPVL 806

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770
            ++   +FSV++ G  IP++    +F  F + A  G +R   G GLGLSI    I + GG
Sbjct: 807 ANSCRVLFSVEDTGCGIPDEKHGKLFTPF-TQACEGFKRSHQGAGLGLSICRRIIRVMGG 865

Query: 771 HVSISSSDEGVTTI 784
           H++  S     TT+
Sbjct: 866 HLAFESEAGTGTTV 879


>gi|89902539|ref|YP_525010.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89347276|gb|ABD71479.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 920

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 4/235 (1%)

Query: 546 TDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +DS+ RA   L + NE L+  D +K+ F+  V++ELR+PLT+I    +LL+     +L +
Sbjct: 658 SDSLERATAELRQANEQLKSLDRLKDDFMSSVTHELRTPLTSIRALAELLRDDPRIAL-A 716

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ Q++E I + +  L  LVN +LD+A +++G  + + + + +  L+++   + A    E
Sbjct: 717 QRRQFIEIIVSETERLSRLVNQVLDMAKIESGHAEWHTAEVDMRALVSQAVSTTAELFRE 776

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSV 723
             I ++V    ++ + +AD  RL+Q+   +LSNA  F    G  V +  + D+     +V
Sbjct: 777 RQIAVEVALPEQVPTLMADPDRLMQVMLNLLSNAAKFVPLPGGRVRVSLSSDDSGVTVAV 836

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
            +NG  +  +    +F+RF        R +G GLGL I    +   GG + + S 
Sbjct: 837 SDNGPGVAAEQQALIFDRFRQGGDAANRPQGTGLGLPISRQIVEHFGGRLWLESG 891


>gi|117925933|ref|YP_866550.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609689|gb|ABK45144.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 997

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 167/371 (45%), Gaps = 53/371 (14%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWK---------TEENRLSP----------GTHI 480
           +D   E + +F  DGR+  +N A   L           T++  L+P          G + 
Sbjct: 360 VDQAGESLLIFDLDGRVVEANSAAEKLLGYRRVTLLNYTQDQLLAPNSTLTIPNHDGDNA 419

Query: 481 RNIA-ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            N +  T     + +DG DL   +   F  E   +Q TL L  D                
Sbjct: 420 ENPSHVTFETRLHTADGQDLEVEVWAGFL-EIDYVQHTLWLARD---------------- 462

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                +TD  R E  +    +   KA + K+ F+  +S+E+R+P+  I+G  +LL  ++L
Sbjct: 463 -----ITDRKRLEAEMVAARDMAEKAYQAKSIFLATMSHEIRTPMNAILGTAELLAETEL 517

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              ++ QS+YV   +++   LL ++NDILD++  +AG ++L      + +++ ++ + +A
Sbjct: 518 ---DADQSRYVRMFTSAGENLLQVINDILDISKFEAGHIELEQRVFSVREMMGDLHKLLA 574

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            K  E  + + V  S+    S + D  RL Q+   +L NA+ F+  G+  +L  +    D
Sbjct: 575 YKCKEKGLYLLVNASETTPDSLIGDPTRLRQVLINLLGNAIKFTDTGTVALLAHSEQIAD 634

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 F V + G  I +   + VF  F        R   G GLGLSI +S I+  GG +
Sbjct: 635 KQVQLAFHVVDTGIGISDADQEKVFRPFEQAGTYITRTHGGTGLGLSICQSLIHKMGGKI 694

Query: 773 SI-SSSDEGVT 782
           ++ S +D G T
Sbjct: 695 TVHSRADHGST 705


>gi|301164109|emb|CBW23665.1| putative two-component regulator sensor kinase [Bacteroides
           fragilis 638R]
          Length = 756

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 16/251 (6%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T    +N+ D  + E+ L E  +   KA E+K SF+ ++S+E+R+PL  I+GF+ 
Sbjct: 496 LGGQKTTGLLLNIEDYKKREQELIEARKMAEKA-ELKESFLANISHEIRTPLNAIVGFST 554

Query: 593 LLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           LL +     +  ++  QY++ I+ +S +LL L+NDIL+L+ +++G M  +     L+ L+
Sbjct: 555 LLASPDDTDITPEEKEQYIDTINRNSELLLKLINDILELSRIESGYMSFDCDDYPLDALI 614

Query: 652 NEVKQS----IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            +  Q+    I  ++H       ++ +G+ G  V  D+ RL+Q+ +  L+NA  F+ +GS
Sbjct: 615 RDTYQTHKILIPGQLH------FLLEEGEKGLIVHVDKNRLVQVITNFLNNASKFTREGS 668

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +  +     + +   V++ G  IP+   K +F RF       Q  G GLGLSI +  I
Sbjct: 669 IKLGWSYMPQTEEVEIYVEDTGIGIPQSEQKIIFGRFYKQNEFAQ--GTGLGLSICKLII 726

Query: 766 NLHGGHVSISS 776
               G +S+ S
Sbjct: 727 EKLQGRLSLRS 737


>gi|307152684|ref|YP_003888068.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982912|gb|ADN14793.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 584

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 129/261 (49%), Gaps = 8/261 (3%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADE---IKNSFVQHVSYELR 581
           EY +  +  AQ++         +  ER   L ++ EA ++A++   IK+ FV  +S+ELR
Sbjct: 168 EYDLQLIEVAQSLTAIAIERQKMDEERNQLLLKEREARQEAEQLNRIKDEFVMMLSHELR 227

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I+G++ LLK   +   NS Q + +E I  ++ +   L++D+LD+  +     KL 
Sbjct: 228 TPLTAILGWSQLLKKRLIHEQNSCQ-KAIETIERNAKLESQLIDDLLDITKILTDKFKLK 286

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L  L+     S+        I I ++ +      + D +RL QIF  ++SN++ F
Sbjct: 287 KDIVYLESLIKLTVDSLLLTAEAKEIPINIMIESPKLKVLGDERRLQQIFWNLVSNSIKF 346

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +  G  + +K  R+      ++ + G  I   +   VF+RF       QR   G+G+GLS
Sbjct: 347 TEAGGLITIKLQREQEQAKITITDTGIGIKPALLPFVFDRFWQADSSSQRMAGGLGIGLS 406

Query: 760 IVESFINLHGGHVSISSSDEG 780
           IV   + LH G V   S  EG
Sbjct: 407 IVHRLVELHQGQVIAESLGEG 427


>gi|163802963|ref|ZP_02196850.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
 gi|159173253|gb|EDP58081.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
          Length = 931

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     +++ Q  Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----MSNSQMDYLQTIEKSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILD + ++AG + L        + L EV    AT  HE ++ I +  D K+    
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKSLEITLKIDPKIPQGL 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G+  I    R    D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|304310910|ref|YP_003810508.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301796643|emb|CBL44855.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1161

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 131/244 (53%), Gaps = 8/244 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + ++VT+ V  E A  E+ EA  +A + K++F+  +S+E+R+P+  +IG T+LL+ +   
Sbjct: 630 SLIDVTEGVEKEIAQRER-EAAEQATQAKSAFLATMSHEIRTPMNGVIGMTELLRETP-- 686

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q+ YV  I  S   L++L+NDILD + +++G +++   ++ L  L++E     A 
Sbjct: 687 -LDLQQTGYVNTIHNSGMALVSLINDILDYSKIESGKLEVESISLDLMALIDECAAVFAQ 745

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +    N+ + V  D ++    ++D  R+ QI    LSNA  F+  GS  I   +  +G  
Sbjct: 746 QSISKNLGLYVDIDPQINDRIISDPARIRQILLNFLSNAFKFTETGSVRIRADSLADGRI 805

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISS 776
              V++ G  + ++  + +F  F        R+  G GLGL+I +    L GG V  IS 
Sbjct: 806 RIGVRDTGIGLSQEQQEKLFQSFSQAEVSTTRKYGGTGLGLAISKRLAELMGGEVGVISE 865

Query: 777 SDEG 780
           S +G
Sbjct: 866 SGKG 869


>gi|33323031|gb|AAQ07255.1| putative sensor kinase PK4 [Oryza sativa Japonica Group]
          Length = 653

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 15/219 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K SF+ ++S+E+R+PL  IIGFT+LL  +    L+ +Q  +++ +  +   LL +VNDIL
Sbjct: 177 KESFLANMSHEIRTPLNAIIGFTELLSGT---PLDKQQQAFIQDVQTAGENLLLIVNDIL 233

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           DL+ +++G + L      L   L  V   +  K   + +   +  D +L   +  D+ RL
Sbjct: 234 DLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKT-ADGVEFNLYLDAELPDVITGDQGRL 292

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNR 741
            QI   +  NA+ F+++G   I  + ++ G+        FSVK+ G  IP++  +S+F R
Sbjct: 293 NQIMVNLAGNALKFTNEGEVTI--SVKNKGETEDSYTIRFSVKDTGIGIPKEHLESIFER 350

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F        R+  G GLGLSIV+  + LH   + + S +
Sbjct: 351 FTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSRE 389


>gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|125714554|gb|ABN53046.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           1313]
          Length = 932

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 139/279 (49%), Gaps = 17/279 (6%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-VTDSVRAERALTEKNEALRK 564
           SFDDE         L+    +E +++     +   +F N +    +AE  +    +   K
Sbjct: 281 SFDDEE------FRLVPKGTVELNMLAENFNELYRSFHNELVRRKKAEETMKAARDEADK 334

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+P+ +IIG+  LLK S    L+ KQ +YVE I  ++  LL ++
Sbjct: 335 ANRAKSEFLASMSHEIRTPINSIIGYQYLLKNS---VLSPKQREYVENIGLAAKNLLAII 391

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           N ILD + ++AG M L      ++D+LNE+   +  +     I +++  D  +  F+  D
Sbjct: 392 NQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGD 451

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+   ++SN + F+ +G   I    ++   +N    FSV + G  I ++  K +F
Sbjct: 452 ITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLF 511

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F        R+  G GLGL+I +  + L  G +++ S
Sbjct: 512 QAFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVES 550


>gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
 gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
          Length = 775

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +  
Sbjct: 268 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE-- 325

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +   
Sbjct: 326 -LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLP 384

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +GD+
Sbjct: 385 LVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRADGDY 442

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           +   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S+ S
Sbjct: 443 LSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDS 502

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 503 EPGMGSQFTVRIP 515


>gi|298387314|ref|ZP_06996867.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
 gi|298259983|gb|EFI02854.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
          Length = 538

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 140/258 (54%), Gaps = 12/258 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F ++T+ V+ ++ L E  E   +++ +K++F+ ++S+E+R+PL  IIGF+D++   +
Sbjct: 287 LLRFEDITEKVKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMI--CQ 344

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G    KQ +Y++ +S+++ +LL L++DILDL+ ++AG M+   +   +NDL+  + + +
Sbjct: 345 TGEEEEKQ-EYMKIVSSNNELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQM 403

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
             K    ++ I      +      DR RL Q+     +NAM F+ KGS  +   +  A+D
Sbjct: 404 QEKNTSPDVAITFTEKAEECILNTDRVRLSQVIINFTNNAMKFTPKGSIQMGYRIDEAKD 463

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  F VK+ G  IP D    VF RFV  N      +G GLGL+I    +   GG +  
Sbjct: 464 --EIYFYVKDTGIGIPADKINEVFERFVKLNTF---AKGTGLGLAICRVIVERLGGTIGA 518

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   +    R+P  E
Sbjct: 519 DSKEGKGSCFWFRLPIHE 536


>gi|304315711|ref|YP_003850856.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777213|gb|ADL67772.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 473

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 5/233 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620
           L + D  +  FV +VS+ELRSPL+ I G+ D +     G++  ++S+ Y+E     +  +
Sbjct: 241 LGRMDNARREFVANVSHELRSPLSTIQGYIDGVVD---GTIPMEKSKFYLEIAQKETRRM 297

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L++++LD+  +++G   LN     +N+L+      + +++++ ++ +KV  D      
Sbjct: 298 SRLISELLDITKMESGAFPLNLVEFDINELIRLTIIKMESRINKKDLMVKVDFDSDKDIV 357

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD+ ++ Q+ + ++ NA+ FS+ G  + +   +        V N G +IP D    +++
Sbjct: 358 EADKDKIEQVLTNLIDNAIKFSNPGGYIHIVTEKSKDKLFIKVHNKGKTIPPDEIDHIWD 417

Query: 741 RFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF   +  R    GVGLGL IV S INLH   + ++SSDE  TT    +  K+
Sbjct: 418 RFYKVDKSRSGSPGVGLGLYIVRSIINLHNEDIWVTSSDEEGTTFTFTLKLKK 470


>gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 837

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 130/250 (52%), Gaps = 11/250 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++++D  RAE  +    +    A+  K+ F+ ++S+E+R+PL  ++G   LL+ +KL   
Sbjct: 426 MDLSDRKRAEEEILRARDLAEAANCAKSEFLANMSHEIRTPLNGVMGMLQLLQLTKL--- 482

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q  Y +    S   L+ L+ DILDL+ ++AG + +  + + L+++L +     +   
Sbjct: 483 DPVQEDYTDTAIQSCNRLVRLLTDILDLSRIEAGKLSIQSAPMELSEVLRQTGDLFSPTA 542

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718
            E  ++++   D  + S  + D  RL Q+ S ++ N++ F+  G   +   L  +   G 
Sbjct: 543 REKGLKLRFDVDPAIPSQILGDATRLQQVLSNMVGNSLKFTHSGGVTVDASLLPSVHGGQ 602

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +FSV + G  IP+D   ++F  F  V+       +G GLGLSI +  ++  GG++S+
Sbjct: 603 CRVLFSVADTGIGIPDDKLGNLFQPFSQVTEGFTRSYQGAGLGLSICKRLVSFMGGNISV 662

Query: 775 SSSDEGVTTI 784
            S  E  TT+
Sbjct: 663 VSELEVGTTM 672


>gi|86742728|ref|YP_483128.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3]
 gi|86569590|gb|ABD13399.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3]
          Length = 1406

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 16/253 (6%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L EK E L  + + K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ  + E I
Sbjct: 866  GLEEKAEQLALSSQYKSEFLANMSHELRTPLNSLLILAKLLADNPDRNLSRKQIDFAETI 925

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             ++ + LL L+NDILDL+ V+AG M ++ +T+    L + V         E  +  +V +
Sbjct: 926  HSAGSELLELINDILDLSKVEAGKMNVDATTVRTAALCDAVAGVFGPVAEEKGLSFQVNL 985

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI----------- 720
            +      FV D QRL Q+   +LSNA+ F+  G+  + +  AR +  F+           
Sbjct: 986  APDVPAEFVTDEQRLQQVLKNLLSNAVKFTDTGTVRLDVTVARPDLPFLSPSLCSAGTVL 1045

Query: 721  -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             F+V + G  +  +  + +F  F        RR  G GLGLSI +    L GG +++SS 
Sbjct: 1046 SFAVTDTGIGVAVEKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGAIAVSSV 1105

Query: 778  DEGVTTINCRIPS 790
                +T    +PS
Sbjct: 1106 VGRGSTFTLYLPS 1118


>gi|330881741|gb|EGH15890.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 554

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516
           F   +  EE    P   +R  A    RY  ES     DG   +A++ IT+  D    L+G
Sbjct: 91  FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 149

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             ++  D                     ++D   AE AL    E   +A   K+ F+  +
Sbjct: 150 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 188

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I+GF  LL      S    Q   + +I  +   LL L+N++LD+A ++AG
Sbjct: 189 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 244

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694
            + L+   + L+ +L E    ++    + NI +K +     KLG  VADRQRL+Q+   +
Sbjct: 245 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 303

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           LSNA+ ++     V ++  + +     SV + G  I  +    +F  F          G 
Sbjct: 304 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 363

Query: 755 GLGLSIVESFINLHGGHVSISSS 777
           GLGL++ +S + +  G +S+ ++
Sbjct: 364 GLGLALSKSMLEMMHGTLSVQNT 386


>gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 941

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ H+S+ELR+PL  I+G+  +L+  K  +L  +Q+  +  I  S   LL ++
Sbjct: 478 ANQAKSDFLAHMSHELRTPLNGILGYAQILRRDK--NLEQRQADGIAVIQRSGEHLLAII 535

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           NDILD+A ++AG + L  S ++L   +  +  +I  K  E  +     ++ G   +   D
Sbjct: 536 NDILDMAKIEAGKVDLYLSDVLLERFIYFIAGTIRLKATEKGLAFSCDMAPGLPAAVRVD 595

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
            +RL Q+   +LSNA+ F+  GS  +           F V++ G  I E   +++F  F 
Sbjct: 596 EKRLRQVLLNLLSNAIKFTETGSVCLRVDWTPPTRLRFEVQDTGIGIEEAHRETIFRPFE 655

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            VS+A R +  G GLGL+I    + L GG + + S   G
Sbjct: 656 QVSDA-RHRVGGTGLGLAISRQLVRLMGGEIHVESRRGG 693


>gi|269126865|ref|YP_003300235.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
 gi|268311823|gb|ACY98197.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
          Length = 1303

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 15/242 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A R L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L  KQ ++
Sbjct: 857  QARRTLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLVLAKLLSENPEGNLTPKQVEF 916

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I  S T LL L+NDILDL+ V+AG M+++   +    L++ V  +      +  +  
Sbjct: 917  AKTIHDSGTDLLQLINDILDLSKVEAGKMEVHPQPLAFTKLVDYVDATFRPLAVDKGLDF 976

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------- 720
             V +S         D QRL Q+   +LSNA+ F+S+G   +  A  +  +F         
Sbjct: 977  AVEVSPQVPEVLFTDEQRLQQVLRNLLSNAVKFTSEGRVRLTIAPAEGVEFTAPALREAP 1036

Query: 721  ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F V + G  I ED  + +F  F        RR  G GLGLSI  +  +L GG +  
Sbjct: 1037 LVIGFEVSDTGIGISEDKLQVIFEAFQQADGTTSRRYGGTGLGLSISRNIAHLLGGEIHA 1096

Query: 775  SS 776
             S
Sbjct: 1097 QS 1098


>gi|227872061|ref|ZP_03990438.1| sensor histidine kinase [Oribacterium sinus F0268]
 gi|227842092|gb|EEJ52345.1| sensor histidine kinase [Oribacterium sinus F0268]
          Length = 411

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 137/253 (54%), Gaps = 5/253 (1%)

Query: 542 FVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++ +S+R  E  L+   E  R+ ++ K   + +++++LR+PLT+I+G+ DLL+ S++ 
Sbjct: 106 LAHIAESIRLMEEELSSHIERERENEQSKTDLITNIAHDLRTPLTSILGYLDLLRNSQMV 165

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               K+  Y+E +   +  L  L+ ++     +  G + +N ST+ L  LL+++ +    
Sbjct: 166 PEEMKK-HYIEIVYNKALRLQKLIEELFGFTKLSYGKLNMNISTLDLVQLLSQLVEESYP 224

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              +NN+     ++ K      D   L ++F  ++SNA+ + ++G  V+++  ++  + +
Sbjct: 225 NFEKNNLSYDFSANVKSLFIEGDGDLLARLFDNLISNAIKYGAEGKRVLIRLRKEKEEVM 284

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V N G  IPE     +F++F  V ++      G GLGL+IV++ +++H G++++  SD
Sbjct: 285 VQVLNFGYVIPEKELPLIFDKFYRVEHSRSLSTGGTGLGLAIVKNIVDMHHGNITV-QSD 343

Query: 779 EGVTTINCRIPSK 791
            G T  N  +P K
Sbjct: 344 MGGTRFNVTLPLK 356


>gi|194017044|ref|ZP_03055657.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
 gi|194011650|gb|EDW21219.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
          Length = 593

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 38/358 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498
           +++GV     DG I ++NP    F   W  E+N ++  G  +              +  +
Sbjct: 262 MADGVITINIDGTILMTNPPAERFLQAWYYEQNMKIKDGDEL------------PPEARE 309

Query: 499 LFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           LF   +++  ++    +LQG   +L  S       PL N Q      +V  +V   R +T
Sbjct: 310 LFHTAVSTEKEQMIEVTLQGRTWVLLMS-------PLYNQQ------DVRGAVAVLRDMT 356

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+    R+ D+++  F+ +VS+ELR+P+  + G+++ +     GS   K+ +  + I   
Sbjct: 357 EE----RRLDKLRKDFIANVSHELRTPIAMLQGYSEAIVDDIAGSEEEKK-EIAQIIYDE 411

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  +  LVND+LDLA ++AG + LN  +    +L  ++ +       E  + +       
Sbjct: 412 SLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQVD 471

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
              FV D  ++ Q+F+ ++ NA+  + +G  V              VK++GS IPE+   
Sbjct: 472 EPYFVLDPDKIEQVFTNLIDNAIRHTPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDLP 531

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F RF     A    R G GLGL+IV++ +  H G +   S     T     IP K+
Sbjct: 532 FIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFTFYIPRKK 589


>gi|159027054|emb|CAO89239.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 733

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 7/239 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS---LNSKQSQYVEYISASS 617
           A   A+  K+ F+ ++S+EL +PLT IIG +  L+     S      KQ  Y++ I  + 
Sbjct: 359 AAEAANLCKSEFLNNMSHELLTPLTCIIGLSSTLQKCSAASNFLPPDKQKHYLQVIQDNG 418

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK--MHENNIRIKVISDG 675
             LL L+ND+L+ + V AG   L+     L  L N V + I T+  + E N+ +++    
Sbjct: 419 NKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEIIKTEAEIKEINLILEMKITE 478

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K   F AD  R+ QI   +L NA+ F+ +   + L+  ++    IF V++ G  IP    
Sbjct: 479 KEHYFYADYDRVQQILLYLLKNALKFTPEQGAITLRLWKEGSQVIFQVEDTGIGIPAQKI 538

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +F +F       +RR  G+GLGL++ +  + LH G + + S  +  +    R+P ++
Sbjct: 539 PLLFEKFTQLDGSRKRRYGGMGLGLALTKQLVELHRGTIEVESCLDKGSIFTVRLPQQK 597


>gi|154249956|ref|YP_001410781.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153892|gb|ABS61124.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 969

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 134/241 (55%), Gaps = 17/241 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E  L +  +   KA++ K+ F+ ++S+E+R+PL  IIGFT+LLK +K   L+ KQ +Y
Sbjct: 444 KYEEELIKAKQEAEKANQAKSIFLANMSHEIRTPLNGIIGFTNLLKETK---LDEKQEKY 500

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENN 666
           V  I  SS +LL ++NDILDLA +++G  +L     +  +L  E++ S+     K  E N
Sbjct: 501 VSIILKSSELLLEIINDILDLAKIESGKYQLEP---LETNLKMELQSSLLLYEAKAKEKN 557

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARD--NGDFI 720
           +  ++  D ++    + D  RL Q+   +++NA+ F+  G +V   + K + D  + +  
Sbjct: 558 VEYEIRIDKEISDCLILDSVRLQQVMFNLINNAIKFTPAGGSVKVFVKKISEDEEHENIR 617

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           FSV + G  IP++  + +F  F   +    ++  G GLGL+I    +++ G  + + S +
Sbjct: 618 FSVIDTGIGIPKEKLEKIFEPFEQASVSVTKKYGGTGLGLAISNLIVSMMGSKIIVESEE 677

Query: 779 E 779
           E
Sbjct: 678 E 678


>gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
 gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
          Length = 929

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     LN+ Q  Y+  I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LNTSQKDYLLTIENSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
            ++NDILD + ++AG + L        D L+EV + +A   HE  + + +  D ++    
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIPAGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ NA+ F+  G+   +V LK+  DN   + F V++ G  I E    
Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDVDNNIALQFMVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG VS++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTS 501


>gi|310824380|ref|YP_003956738.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397452|gb|ADO74911.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 683

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 12/244 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++TD    ER L    +   +A   K  F+  +S+E+R+P+  IIG ++LL  + L 
Sbjct: 127 TLFDITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLP 186

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L     +Y   + +SS  LL L+N ILD   ++AG + L      L  LL+ +  +++ 
Sbjct: 187 PLY---QEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSV 243

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + I+V  D ++  + + D  +L Q+ + +L NA+ F+ +G+ V L   R +GD 
Sbjct: 244 KAEEKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQGA-VTLAVRRLHGDA 302

Query: 719 ---FI-FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
              F+ F V + G  IP+D    +F  F   ++    +  G GLGL+I +  + LHG  +
Sbjct: 303 EGVFLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKM 362

Query: 773 SISS 776
            + S
Sbjct: 363 RVES 366


>gi|290509876|ref|ZP_06549247.1| sensory box histidine kinase/response regulator [Klebsiella sp.
           1_1_55]
 gi|289779270|gb|EFD87267.1| sensory box histidine kinase/response regulator [Klebsiella sp.
           1_1_55]
          Length = 897

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 118/218 (54%), Gaps = 7/218 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A+E K++F+ ++S+E+R+P+  I+G T L   +    L ++Q +Y+  + +S+  LL+
Sbjct: 262 REANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT---PLTAEQREYLSLVMSSAQSLLH 318

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++NDILD + +++G M+++   + +   +  + +       E  I + V IS       +
Sbjct: 319 IINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVPEVLI 378

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D  RL QI + +L NA+ F+ +G  ++ +  A D   + F +++ G  I  +  K++F 
Sbjct: 379 VDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQKAIFE 438

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F        RR  G GLGL+I    ++L GG + + S
Sbjct: 439 AFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVES 476


>gi|209966096|ref|YP_002299011.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959562|gb|ACJ00199.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 744

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 116/228 (50%), Gaps = 4/228 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNL 623
           A+  K  F+  +S+ELR+PL  I+GF+++++    G ++    Q Y  ++  S++ LL++
Sbjct: 496 ANRAKTQFLATMSHELRTPLNAILGFSEIIRDGTFGQVSPGIYQEYAGHVFDSASHLLDI 555

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+LDLA V++  + L    + L + +    Q++     +  I   V   G   + +AD
Sbjct: 556 INDVLDLAKVESATVTLTPEPVPLEETVRRAVQTVRPIARDRRISFAV-QGGPAVTVLAD 614

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R+ LLQ    ILSNA+  S +  TV ++   ++G    ++++ G   P D+   +   + 
Sbjct: 615 RRALLQSLYNILSNALRHSPENGTVEVRLEPEDGFGALTIRDFGPGFPPDVLAELGQPYP 674

Query: 744 S--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N +    R  GLG +I  + +   GG +   ++ +G   +  R+P
Sbjct: 675 GRRNVYVSAARSTGLGYAITAALLGAMGGEIEACNAPDGGACVTFRLP 722


>gi|255530499|ref|YP_003090871.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343483|gb|ACU02809.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 1161

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 26/262 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+ A++ K E L  + + K+ F+ ++S+ELR+PL +I+    +LK ++  +LN  Q +Y
Sbjct: 470 QAKEAMSLKAEELEISSKYKSEFLANMSHELRTPLNSILILARILKENRPENLNEDQIKY 529

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE----N 665
              I  + T LL L+NDILDL+ +++G  KL+ S + L  L+  +KQ +    +E     
Sbjct: 530 AGVIHNAGTDLLTLINDILDLSKIESG--KLDLSILPLKPLV--IKQDMEALFNELAKSK 585

Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--- 721
            I    + D +L  + + D+ RL QI   +LSNA  F+ +   + +  ++ +   +F   
Sbjct: 586 KISFHTVLDKELPATLLTDQSRLEQIVKNLLSNAFKFTPEHGEITMTISKASAGTLFFSR 645

Query: 722 ------------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                       SVK++G  IP D  K +F  F        R+  G GLGLSI +   ++
Sbjct: 646 QLKTTTEDIIAISVKDSGIGIPADKQKLIFEAFQQADGSTSRKYGGTGLGLSISKELAHI 705

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG + ++S     +T    +P
Sbjct: 706 LGGEIQVNSKQGEGSTFTLYLP 727


>gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 918

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 10/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q+ YVE I++S
Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
            + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D G
Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRG 512

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNG--DFIFSVKNNGSSIP 731
                  D  RL Q+   +LSNA+ F+++G   +    R  ++G    ++SV ++G  I 
Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDESGRERLLYSVSDSGIGIS 572

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +P
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 752

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 124/240 (51%), Gaps = 3/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVE 611
           R   E+     KA + K+ F+ ++S+ELR+PL  I GF+++L     G L  ++   Y E
Sbjct: 500 RKYAEEKTKAEKASQAKSVFLANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIGYAE 559

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S   LL+++NDILD+A ++AG M ++   I   + ++   + I  +  + +I + +
Sbjct: 560 DILSSGQHLLDMINDILDMAKIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDIDLNL 619

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +     D + + Q+   ++SNA+ F+  G  + +   ++N     SV +NG  IP
Sbjct: 620 TVKDDIPDIEGDHRAIKQMVLNLVSNAIKFTDPGGYINISVVKENAFVRVSVADNGIGIP 679

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +     +   F  ++    R  +G GLGLS+ +SF  +HGG + I S     TT++  +P
Sbjct: 680 KQDIPRLAQPFEQSSADENRNSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVSFLLP 739


>gi|237712224|ref|ZP_04542705.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229453545|gb|EEO59266.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 730

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 141/270 (52%), Gaps = 19/270 (7%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++PL     ++  +  ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  
Sbjct: 329 TLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNA 388

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ L+    +    + +  Y + I+ +S ILL L+NDILDLA ++AG ++     + 
Sbjct: 389 IVGFSRLM---TMADNAADEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMD 445

Query: 647 LNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           L +L   V +     MH++ ++  V  I D K  S +   D+ R++Q+ + +++NA+ F+
Sbjct: 446 LGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFT 500

Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
            KG        R   ++I F VK+ G  I E+  K +F RFV      Q  G GLGL+I 
Sbjct: 501 FKGEIRFGFEVRK--EYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAIC 556

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +   GG ++  S     +T    IP K
Sbjct: 557 RVIVEKLGGEITAESKLNEGSTFRFTIPYK 586


>gi|320334816|ref|YP_004171527.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
 gi|319756105|gb|ADV67862.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
          Length = 1838

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 16/256 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +AL EK   L    + K+ F+ ++S+ELR+PL +++   + L+ +   +L+ +Q  Y 
Sbjct: 1113 ARQALEEKAAQLALTSKYKSEFLANMSHELRTPLNSLLLLANQLRDNPERNLSEQQVAYA 1172

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I AS   LLNL+NDILDL+ +++G +  + + + L  +   V+ +      +  +   
Sbjct: 1173 RTIFASGNDLLNLINDILDLSKIESGTVTADTADVPLRAVRESVESTFTHMAADKGVAFA 1232

Query: 671  VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------------KAARDN 716
            +  D +L GS V+D +RLLQI   +LSNA  F+ +G   +                +R  
Sbjct: 1233 LDFDARLPGSLVSDEKRLLQILKNLLSNAFKFTERGEVRLTVTPATSGWSSDHPALSRAP 1292

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            G   F V + G  I  D  + +F  F        R+  G GLGL+I      + GG +++
Sbjct: 1293 GVIAFRVSDTGIGIAPDKQRVIFEAFQQADGTTSRKYGGTGLGLAISRELARILGGEITL 1352

Query: 775  SSSDEGVTTINCRIPS 790
             S+    +T    +P+
Sbjct: 1353 QSTPGTGSTFTLYLPT 1368


>gi|307151277|ref|YP_003886661.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306981505|gb|ADN13386.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1719

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 20/231 (8%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            K D +K+ F+  VS+ELR+PLT I G   +L++  L       ++ ++    +S  L  L
Sbjct: 1468 KLDRMKDEFISIVSHELRTPLTAIRGSLGILESGVLNDEPLTANRMLKVALNNSERLARL 1527

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            VNDILDL  +++G  +L      ++DL+ +  +S+    +  +IRI   +        AD
Sbjct: 1528 VNDILDLERLESGKTELVMKPCQVSDLMEQAVESVEAIANLASIRINFTAVE--AQVWAD 1585

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----------------IFSVKNNG 727
               ++Q    +L N + FS  GS + LKA R NG++                +FS+++ G
Sbjct: 1586 FDAIVQTLINLLGNGIKFSDPGSMIWLKAQRSNGEWGLQKSENFPHLGSSYLLFSIEDQG 1645

Query: 728  SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              IP D  +S+F RF  V  +   Q+ G GLGL+I +S I  H G + + S
Sbjct: 1646 RGIPSDKLESIFGRFQQVDVSDSRQKGGTGLGLAICKSIIEQHNGKIWVES 1696


>gi|258591510|emb|CBE67811.1| putative Sensor protein [NC10 bacterium 'Dutch sediment']
          Length = 1049

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 13/242 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ +       A   K  F+  +S+E+R+PL  IIG T+L   +   +L ++Q ++++ +
Sbjct: 505 AMQQAKSVAEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDT---ALTTEQREFLQVV 561

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +SS  LL ++NDILDL+ ++AG M +  +   L +++  V + ++ +  +  + +    
Sbjct: 562 QSSSEALLTVINDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYV 621

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNN 726
           D  L S V  D  RL Q+   ++ NA+ F+ +G   I      ++A    G  I SV + 
Sbjct: 622 DPALPSRVLGDPMRLRQVLVNLVGNAIKFTERGEVTIQVERTQVEAPGRIGVHI-SVADT 680

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP      +F+ F        RR  G GLGLSI ++ + L GG + + S     +T 
Sbjct: 681 GIGIPTHQQARIFDPFAQADATTARRFGGSGLGLSISKALMELMGGRIWVESEVGKGSTF 740

Query: 785 NC 786
           +C
Sbjct: 741 HC 742


>gi|254785705|ref|YP_003073134.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
 gi|237685079|gb|ACR12343.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
          Length = 737

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 13/233 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTI 619
           +A+  K+ F+  +S+ELR+PL  IIG+TD+    L    +  L++  ++ V     +S  
Sbjct: 356 EANLAKSEFLSLMSHELRTPLQAIIGYTDVVIEDLYVEGMDHLSTDLTRVVN----NSQR 411

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+N +LDLA +++G M L    + L+ L+NE   ++  +  E N+ ++   +    +
Sbjct: 412 LLRLINGVLDLAKIESGHMDLTLEHLELHSLVNEAIDNVKPQFDEKNLPLETDLESIPEA 471

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
            + DR++LL I   +LSNA  F+ +G   +  A + N + I  + ++ G  I       V
Sbjct: 472 ALVDREKLLHIILNLLSNACKFTDRGRVTL--AVKHNANAITITCRDTGMGIDAAALPFV 529

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  V ++   Q  G GLGL+I + F  L GGH++++S     T     IP
Sbjct: 530 FDRFQQVDSSATRQHSGSGLGLAITKQFCELMGGHITVNSEPGRGTHFKVEIP 582


>gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 1131

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 8/252 (3%)

Query: 544 NVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +V  ++   RA  E   + EAL + D  K +F  +VS+E R+PLT ++G  + L      
Sbjct: 340 HVATAIANARAYDEERRRAEALAELDRAKTTFYSNVSHEFRTPLTLMLGPLEELLGKSER 399

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           ++  +    VE    + T LL LVN +LD + ++AG M +++    L     E+     +
Sbjct: 400 AIRPENHHLVEVAYRNGTRLLKLVNTLLDFSRIEAGRMNVSFQATDLVAFTAELTALFRS 459

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              +  +R+++ SD        +R+   +I   +LSNA  F+ +G   I  A RD GD +
Sbjct: 460 ATDKAGLRLEIESDALPHRVYVNREMWEKIVLNLLSNAFKFTFEGGITI--ALRDGGDGV 517

Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SV++ G  IP +    VF RF  V  A      G G+GLS+V+  +  HGG + + S 
Sbjct: 518 AVSVRDTGVGIPPNELPRVFERFHRVEGAKGRSFEGSGIGLSLVQELVKTHGGTIEVESE 577

Query: 778 DEGVTTINCRIP 789
               TT +  +P
Sbjct: 578 VGKGTTFHIHLP 589



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 11/151 (7%)

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSS 703
            I LN +++     +  ++   N+ ++   DG +    VA   R  Q+FS +L N++D   
Sbjct: 981  IALNAVMDSTLDLLKNRIRTKNVTVEKQWDGDVHAEAVAGEMR--QVFSNLLQNSLDAVD 1038

Query: 704  KGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
            +G  + ++ +  R+      ++ ++G  I  +  + +F  F +   +G   G GLGL + 
Sbjct: 1039 EGGAIKVRISTIRNGSAVRVTIADSGKGIEANFRERIFEPFFTT--KGAV-GTGLGLWVT 1095

Query: 762  ESFINLHGGHV---SISSSDEGVTTINCRIP 789
               +  HGG +   S++S D+  T+ +  +P
Sbjct: 1096 RQIVEKHGGRIRVHSLTSGDQRGTSFSIVLP 1126


>gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
 gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
          Length = 1231

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 10/232 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD  K+ F+ ++S+E+R+P+  ++G  +LL  SKL   +++Q  + + I  S   LL ++
Sbjct: 678 ADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKL---DTRQKTFTDIIVKSGNALLTII 734

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVAD 683
           NDILD + ++AG MKL        + + +V   +++   E +I + V  D  + G  + D
Sbjct: 735 NDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIVRIDASVSGKVIGD 794

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFS--VKNNGSSIPEDMCKSVF 739
             R  QI + I+ NA+ F+  G  ++  +A+  +  + IFS  V+++G  IP D  +++F
Sbjct: 795 AGRFRQIVTNIVGNAVKFTETGHVLVELSAQSAEASESIFSLRVEDSGIGIPVDKLETIF 854

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++F        RR  G GLGL+I    + L  G +++ S     +     IP
Sbjct: 855 DKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGRGSAFEVDIP 906


>gi|260894821|ref|ZP_05903317.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308089386|gb|EFO39081.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
          Length = 632

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 144/284 (50%), Gaps = 24/284 (8%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM----------LTFVNVTDSVRAERALTEKNEALR 563
           L   L+LLS +V ++S    P+  T+          L       SV+  R    + EA R
Sbjct: 175 LVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEAER 234

Query: 564 KADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              E+    K+ F+  +S+E+R+P   IIG   LL  +KL   + +Q ++VE I  SS  
Sbjct: 235 DKAEVANRKKSEFLATMSHEIRTPTNGIIGVASLLSDTKL---DPQQKEFVEIIDNSSQS 291

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ +++DILD + V+AG ++L   T     LL++V      K  + N+++    D KL +
Sbjct: 292 LMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPA 351

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDM 734
            V  D  RL Q+ + +LSNA+ F+ +G   +L +  +  + I    F V ++G  I ++ 
Sbjct: 352 EVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEH 411

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            ++VF RF        R+  G GLGL+I    +++ GG + ++S
Sbjct: 412 QQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455


>gi|83942502|ref|ZP_00954963.1| PAS [Sulfitobacter sp. EE-36]
 gi|83846595|gb|EAP84471.1| PAS [Sulfitobacter sp. EE-36]
          Length = 698

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 169/372 (45%), Gaps = 50/372 (13%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT---HIRNIAATCSRY----YN 492
           I+ L++G  +F    R+ LSN  ++ ++      L PGT    +  I     ++    YN
Sbjct: 316 IEALNDGFVMFDAQDRLLLSNSKYKEMYDLPSEVLKPGTPFAELLRIGVKSKQFPMGRYN 375

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           E +  +   AI      E ++ +    L    V++ S  PL +   +   V+VT+     
Sbjct: 376 EEEWIERRLAI----HRENRTSETEQHLWGGRVIKASDRPLADGSYVGLRVDVTE----- 426

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-------------- 598
             L+   +A   A + K  F+  +S+ELR+PLT I+G   L + ++              
Sbjct: 427 --LSHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSRNARMLSSSKALLKGYED 484

Query: 599 -----------LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
                      L  +  + S  +  +  S   LL+L+N+ILD+A +++G + +  S   +
Sbjct: 485 GEISHAEAKRLLDEMYDQLSGLMNRLVQSGEHLLHLINEILDVAKIESGSLVIEPSPCAV 544

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            D+++ V + + T   +  +   V+ +  +    AD+ R  QI   ++ NA+ F+  G  
Sbjct: 545 QDIVDPVIEQLRTLSSKKGLAFDVVQEADM--VFADKVRARQILFNLIGNAIKFTDTGFV 602

Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
            ++   +  GD + F V ++G+ IPE   +S+F  F        RR  G G+GL+I  S 
Sbjct: 603 RLV--VKPVGDVVSFEVHDSGAGIPEAELQSIFEVFYQVDSTATRRAGGTGMGLAISRSL 660

Query: 765 INLHGGHVSISS 776
             + GG +S+SS
Sbjct: 661 AEMQGGSLSVSS 672


>gi|37523730|ref|NP_927107.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214735|dbj|BAC92102.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 342

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 7/230 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D+ +  FV  VS+ELR+PLT+I GF D L  S      ++  +++  I   +  L  LV 
Sbjct: 100 DQAQTDFVSTVSHELRTPLTSIKGFVDTLLRSGSQLSEAQHRRFLRIIKNQADRLTRLVE 159

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DIL ++ + +G +K     + L ++++ V +++A K     +R ++   G L    AD+ 
Sbjct: 160 DILTVSRIQSGRLKNLPQRLDLGEMIDRVFENLAQKYAAQRMRREL--PGALPEVWADQD 217

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF 742
           RL QI + ++ NA+ +S  G+ V + A  D  D      +V++ G  IPE+    +FNRF
Sbjct: 218 RLEQILTNLIDNALKYSEHGAPVCVSADLDPEDRNVLWIAVRDLGIGIPEENLDQIFNRF 277

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +    +R G GLGL I +S +   GG + + S     +T    +P+
Sbjct: 278 SRIDSPLTREREGTGLGLYITKSLVESLGGTIHVESRYGVGSTFTVSLPA 327


>gi|237726370|ref|ZP_04556851.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|265751928|ref|ZP_06087721.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|229434896|gb|EEO44973.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|263236720|gb|EEZ22190.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 781

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 141/270 (52%), Gaps = 19/270 (7%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++PL     ++  +  ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  
Sbjct: 380 TLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNA 439

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ L+    +    + +  Y + I+ +S ILL L+NDILDLA ++AG ++     + 
Sbjct: 440 IVGFSRLM---TMADNAADEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMD 496

Query: 647 LNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           L +L   V +     MH++ ++  V  I D K  S +   D+ R++Q+ + +++NA+ F+
Sbjct: 497 LGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFT 551

Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
            KG        R   ++I F VK+ G  I E+  K +F RFV      Q  G GLGL+I 
Sbjct: 552 FKGEIRFGFEVR--KEYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAIC 607

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +   GG ++  S     +T    IP K
Sbjct: 608 RVIVEKLGGEITAESKLNEGSTFRFTIPYK 637


>gi|325663167|ref|ZP_08151617.1| hypothetical protein HMPREF0490_02358 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470621|gb|EGC73851.1| hypothetical protein HMPREF0490_02358 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 471

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+  ++ +  F+ +VS++ RSPLT+I G+ + +    +      Q +Y+  I   +  L 
Sbjct: 239 LKDMEDYQKKFIANVSHDFRSPLTSIKGYVEAIVDGTIP--QELQGKYLNIILFETERLT 296

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L  D+L L   D   + L+ +   L+D +     S         I I+++ D ++ +  
Sbjct: 297 DLTKDLLTLNEFDTKDLLLDKTNFNLHDTIKHTAASFEGTCTSKKISIELLFDPRIQNVF 356

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR ++ Q+   +L NA+ FS+  S+++L+    NG    SVK++G  IP+     V+ R
Sbjct: 357 ADRGKIQQVLYNLLDNAIKFSNPDSSIVLETTERNGKVFVSVKDSGIGIPKKSLTKVWER 416

Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  S+  RG+ ++G GLGL+IV+  I  HG ++++ S+ EGV T
Sbjct: 417 FYKSDLSRGKDKKGTGLGLAIVKEIIQAHGENINVIST-EGVGT 459


>gi|325273896|ref|ZP_08140066.1| histidine kinase [Pseudomonas sp. TJI-51]
 gi|324100973|gb|EGB98649.1| histidine kinase [Pseudomonas sp. TJI-51]
          Length = 282

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 2/234 (0%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + E LR+A ++K+ F+ ++S+E R+PL +I+  T LL     G L+++Q + V +IS ++
Sbjct: 38  QAEQLRQASDLKSRFLSYMSHEFRTPLGSILSITGLLTDELDGPLSAEQHRQVTFISTAT 97

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L ++V+D+LDLA ++AG + ++ +   + DL   ++      +    + +       L
Sbjct: 98  RELSDMVDDLLDLAKIEAGRISISPAWFDMLDLFAALRGMFRPIVDATAVDLIFEEPTGL 157

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D ++L QI    +SNA+ F+++G   +      +    F+V++ G  I  ++  +
Sbjct: 158 PRLYTDDKKLAQILRNFISNALKFTAQGEVRVSAQLYGDDRIRFAVRDTGIGIAAELLDT 217

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F  V +  + + RG GLGLS+ + F  L GG V + S     +T    IP
Sbjct: 218 LFEDFTQVDSPLQKRFRGTGLGLSLCKRFAMLLGGEVGVHSEPGEGSTFFVVIP 271


>gi|295317795|gb|ADF98172.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 617

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+ ++S EL++PL  I     +L   K  + +  K+ QY
Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISQELKTPLNVIFTAVQILDLYKKDAKSYDKKEQY 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + I SVK+ G  
Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPED  +++F+RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 519 IPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567


>gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 942

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 7/237 (2%)

Query: 544 NVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++ D +R   A L    E    A++ K+ F+ H+S+ELR+PL  I+G+  +LK     +L
Sbjct: 454 HLEDMIRERTAELAVAKERADAANQAKSEFLAHMSHELRTPLNGILGYAQILKRDT--TL 511

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q   +  I  S   LL L++DILD+A ++AG M+LN S + L   ++ + ++I  K 
Sbjct: 512 DQHQLDGLTVIQRSGEHLLTLIDDILDIAKIEAGRMELNLSDVPLEQFVSFIAETIRVKA 571

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            E  +         L + V  D  RL Q    +LSNA+ F+ KGS  +  A        F
Sbjct: 572 TEKGLDFVCEMPPDLPACVRVDEIRLRQALLNLLSNAIRFTEKGSVRLRVAFLPPARLCF 631

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V++ G  I +   + +F+ F  VS+  R +  G GLGL+I    + L GG + + S
Sbjct: 632 EVRDTGIGIDQGRLEEIFSPFEQVSD-DRHRFGGTGLGLAISRQLVRLMGGEIHVES 687


>gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
 gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
          Length = 767

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 13/236 (5%)

Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R ER   E N A+ KAD   + K+ F+ ++S+E+R+P+  +IG   L+  +    L+  Q
Sbjct: 224 RDERE-AELNAAMIKADAANKAKSEFLANMSHEIRTPMNGVIGMAQLMLET---DLSDDQ 279

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHEN 665
           + Y   I +S + L+ ++NDILD + +DAG M L  +   L  +  +    + A  +H+ 
Sbjct: 280 NLYANTIQSSGSALVEIINDILDYSKIDAGKMTLKNAPFDLEQVAQDCSPLMSAQALHKG 339

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FS 722
              +   S      ++ D  R+ QI   IL NA+ F+ KGS         +GD I    S
Sbjct: 340 LEVVLDFSQDLPKGYIGDSGRVRQILMNILGNAIKFTEKGSVEFAVNGIQSGDEIALELS 399

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +K+ G  IP++  +S+F  F     A   Q  G GLGL+IV   ++L GG +S+ S
Sbjct: 400 IKDTGIGIPQNKLQSIFVPFEQAEGAKNRQFDGTGLGLAIVNHMVDLMGGSISVES 455


>gi|206580641|ref|YP_002238911.1| sensory box histidine kinase/response regulator [Klebsiella
           pneumoniae 342]
 gi|206569699|gb|ACI11475.1| sensory box histidine kinase/response regulator [Klebsiella
           pneumoniae 342]
          Length = 897

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 118/218 (54%), Gaps = 7/218 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A+E K++F+ ++S+E+R+P+  I+G T L   +    L ++Q +Y+  + +S+  LL+
Sbjct: 262 REANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT---PLTAEQREYLSLVMSSAQSLLH 318

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++NDILD + +++G M+++   + +   +  + +       E  I + V IS       +
Sbjct: 319 IINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVPEVLI 378

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D  RL QI + +L NA+ F+ +G  ++ +  A D   + F +++ G  I  +  K++F 
Sbjct: 379 VDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQKAIFE 438

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F        RR  G GLGL+I    ++L GG + + S
Sbjct: 439 AFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVES 476


>gi|17230934|ref|NP_487482.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132575|dbj|BAB75141.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 865

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ IK+ F+  +S+ELR+PL  I+G++ LL++ +  +  + ++  +E I  ++T+   L+
Sbjct: 490 ANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDRA--LETIERNATLQTQLI 547

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            D+LD++ +  G + LN   + L  ++     ++        I+I+ + D  LG  + D 
Sbjct: 548 EDLLDVSRILQGKLSLNICPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPNLGQVMGDA 607

Query: 685 QRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            RL Q+   +LSNA+ F+S G TV   LKA  D       V + G  I  +    VF+ F
Sbjct: 608 NRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQ--IQVIDTGKGITPEFLPYVFDYF 665

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                   R   G+GLGL+IV   + LHGG V   S  +G+  T    +P
Sbjct: 666 RQADGTTTRNFGGLGLGLAIVRQVVELHGGTVQAKSPGDGLGATFTVNLP 715


>gi|298486447|ref|ZP_07004507.1| Sensory box histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158924|gb|EFH99984.1| Sensory box histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 523

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516
           F   +  EE    P   +R  A    RY  ES     DG   +A++ IT+  D    L+G
Sbjct: 60  FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 118

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             ++  D                     ++D   AE AL    E   +A   K+ F+  +
Sbjct: 119 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 157

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I+GF  LL      S    Q   + +I  +   LL L+N++LD+A ++AG
Sbjct: 158 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 213

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694
            + L+   + L+ +L E    ++    + NI +K +     KLG  VADRQRL+Q+   +
Sbjct: 214 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 272

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           LSNA+ ++     V ++  + +     SV + G  I  +    +F  F          G 
Sbjct: 273 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 332

Query: 755 GLGLSIVESFINLHGGHVSISSS 777
           GLGL++ +S + +  G +S+ ++
Sbjct: 333 GLGLALSKSMLEMMHGTLSVQNT 355


>gi|260910360|ref|ZP_05917033.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635543|gb|EEX53560.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 858

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 125/248 (50%), Gaps = 17/248 (6%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQS 607
           V+    L EKN  +  A + K  F  +VS+ELR+PLT I      LL  ++L ++   Q 
Sbjct: 321 VKLNEKLEEKNREIEAATQAKLMFFTNVSHELRTPLTLIETPVEQLLAENQLSNV---QR 377

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS-IATKMHENN 666
           Q +E    +   LL L+N ILD   V+ G M L  +   L  L++ V    +AT  H+  
Sbjct: 378 QLLEVAHRNVRTLLKLINQILDFRKVEGGKMTLQLAETDLAALISNVASEFLATAKHK-- 435

Query: 667 IRIKVISDGKLGSFVA---DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIF 721
            RIK+     L   +    D +++ ++ S ILSNA+ F+     + ++ A D   G    
Sbjct: 436 -RIKLTC--HLPEHIKATIDAEKIERVVSNILSNAVKFTPAEGEINVELAADTPQGTATL 492

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           S+ N G  I E     +F+RF     +  + G G+GL++ ++F+++HGG + + S DEG 
Sbjct: 493 SIMNTGKGIAERDLPHIFDRFYQP--QNSKEGTGIGLALAKAFVDMHGGDIGVCSKDEGP 550

Query: 782 TTINCRIP 789
           T    R+P
Sbjct: 551 TVFTVRLP 558


>gi|6166489|gb|AAF04854.1|AF197912_1 histidine protein kinase homolog GacS [Azotobacter vinelandii]
          Length = 905

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 124/227 (54%), Gaps = 13/227 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  IIGFT+LL+  +L     +Q  Y+  I  S+
Sbjct: 262 RREAL-EASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCEL---TPRQHDYLNTIQKSA 317

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L ++   L +L+ +    +A   H  ++ +   +  D 
Sbjct: 318 DSLLDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSLIYRDT 377

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731
            L +   D QRL Q+ + ++SNA+ F+++G+  +     D G+       SV + G  + 
Sbjct: 378 PL-ALNGDPQRLRQVLTNLISNAIKFTNEGTIAVRAMVEDIGEEFAQLRISVHDTGIGLS 436

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++   ++F  F    N+   Q  G GLGL I +  I   GG + ++S
Sbjct: 437 QEDLNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNS 483


>gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
 gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
          Length = 587

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVTTLKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 586

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 156/334 (46%), Gaps = 33/334 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +++GV      GR+ ++NP    L         P     ++  T  +   E         
Sbjct: 253 MTDGVITLDSSGRVLMANPQAEELLGN-----GPQGSF-DLELTVEQVLGE--------- 297

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEA 561
           ++      +KSLQ  +++    +L   + PL N ++ +   V V   V  E+ L    E+
Sbjct: 298 LVQRVKHNKKSLQDEVKV-EGRILSVRLAPLLNDESEVWGVVAVLQDVTREKKL----ES 352

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+       FV +VS+ELR+PLT + G+T+ L    +     K+ +Y+  I   +  L 
Sbjct: 353 LRR------EFVANVSHELRTPLTYLQGYTEALIDGMVKQPEEKK-KYLNIILEETLRLR 405

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSF 680
            LVND+LDL+ ++ G + L    I LN L+  V + +     +   R+ + ++ K L   
Sbjct: 406 RLVNDLLDLSLMETGHLTLKKDNISLNKLIERVIKKVNPVAEKK--RVNITAELKELPLI 463

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  R+ Q+   ++ NA+ ++  G  +I++A+         VK+ G  IPED    ++ 
Sbjct: 464 YADEDRMEQVLINLIDNALRYTENGGEIIIEASAGTESVTVCVKDRGPGIPEDELPFIWE 523

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           RF  V  A      G G+GL+IV++ I  HGG V
Sbjct: 524 RFYKVDKARTRDNGGTGIGLAIVKNIIEAHGGKV 557


>gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 837

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 11/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T++    + L    +A   A+  K  F+ ++S+E+R+PL  I G   LL T+   S 
Sbjct: 434 IDLTETEAMRKELIASKDAAVAANRAKTEFLANMSHEIRTPLNGIYGMLQLLATT---SP 490

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q +YV     S+  L +L++DILDL+ ++A  + +        +L+  +K       
Sbjct: 491 DDEQQEYVTAALKSAKRLSSLLSDILDLSKIEANKLDICRKAFPFQELVQSLKDIFVLSA 550

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDN 716
            E  +RIK  + DG  G  V D  R+ QI   ++ NA+ F+  G     + ++ ++A   
Sbjct: 551 REKALRIKFSVEDGIPGHLVGDEIRVRQILFNLIGNAIKFTETGGVAVKACLLPESADGR 610

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +FSVK+ G  I ED    VF  F     ++  +++G GLGL+IV+  + +  G + I
Sbjct: 611 VRILFSVKDTGIGIREDKVHYVFEPFAQADGSYIREQQGAGLGLTIVKRVVEMLDGILCI 670

Query: 775 SSSDEGVTTINCRIP 789
            S     TTI+  +P
Sbjct: 671 DSKFGSGTTISVALP 685


>gi|226945757|ref|YP_002800830.1| alginate regulatory hybrid histidine protein kinase GacS
           [Azotobacter vinelandii DJ]
 gi|226720684|gb|ACO79855.1| alginate regulatory hybrid histidine protein kinase GacS
           [Azotobacter vinelandii DJ]
          Length = 905

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 124/227 (54%), Gaps = 13/227 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  IIGFT+LL+  +L     +Q  Y+  I  S+
Sbjct: 262 RREAL-EASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCEL---TPRQHDYLNTIQKSA 317

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L ++   L +L+ +    +A   H  ++ +   +  D 
Sbjct: 318 DSLLDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSLIYRDT 377

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731
            L +   D QRL Q+ + ++SNA+ F+++G+  +     D G+       SV + G  + 
Sbjct: 378 PL-ALNGDPQRLRQVLTNLISNAIKFTNEGTIAVRAMVEDIGEEFAQLRISVHDTGIGLS 436

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++   ++F  F    N+   Q  G GLGL I +  I   GG + ++S
Sbjct: 437 QEDLNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNS 483


>gi|298290623|ref|YP_003692562.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
 gi|296927134|gb|ADH87943.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
          Length = 874

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 131/251 (52%), Gaps = 4/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           ++T   +AE  LTE      +A+  K+ F+  +S+E+R+PL  IIGF++++   + G++ 
Sbjct: 618 DITQWKKAEEELTEAKHLAERANLAKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGAIE 677

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +   Y+  I +S   L++L+ND+LDL+ ++AG + L ++++ LN+++ +    +  + 
Sbjct: 678 NQRYRDYLRDIHSSGEHLISLINDLLDLSKIEAGKLDLAFTSVALNEIVQQCMAIMQPQA 737

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIF 721
           +   I ++      L   VAD + + QI   ++SN++ F+  G  VIL     + G+ + 
Sbjct: 738 NRERIVVRSSLATDLPPVVADARSIRQIVLNLVSNSVKFTQPGGQVILSTTLTEQGEVVL 797

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  + E         F  ++ + R    G GLGL + ++    +    +I S+ +
Sbjct: 798 RVRDTGIGMSEADIAIAMEPFRQIATSGRAGSGGTGLGLPLTKALAEANRASFNIRSAVD 857

Query: 780 GVTTINCRIPS 790
             T +    PS
Sbjct: 858 VGTIVEITFPS 868


>gi|160898519|ref|YP_001564101.1| histidine kinase [Delftia acidovorans SPH-1]
 gi|160364103|gb|ABX35716.1| histidine kinase [Delftia acidovorans SPH-1]
          Length = 774

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 140/281 (49%), Gaps = 16/281 (5%)

Query: 515 QGTLEL-LSDS-VLEYSIIPLPNAQTMLTFVNVTDSV---RAERALTEKNEALRKADEIK 569
           QG  EL L D  ++E S  P  +A   + F  V+D     + + AL +       A + K
Sbjct: 222 QGPRELALGDGRLVEVSTTPTTHAGEPVVFCLVSDVTALRQVQAALVDAKLRAESASQAK 281

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
             F+  +S+E+R+PL  I+G  +LL  S++    S+Q++Y+  +  +S  LL +VND LD
Sbjct: 282 TQFLATMSHEIRTPLFGILGTLELLALSRV---PSEQTRYLGAMQQASASLLRIVNDSLD 338

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLL 688
           L+ ++AG ++L        +LL+ V   + ++  +  +++  +SD K     V D  RL 
Sbjct: 339 LSAIEAGRLQLEAHAFSATELLDSVAAGLLSRAEQKGLQLYAVSDVKTPPLLVGDALRLR 398

Query: 689 QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           QI   ++ NA+ F+  G   I    +  + +  D  F V++ G  I  +    +F+ +  
Sbjct: 399 QILDNLVGNAIKFTFSGHVAIRLQVMGESEEGTDLRFQVQDTGIGIDPEQQPFLFDPYFR 458

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
              A + Q +G GLGLSI        GG ++ ++S  G+ T
Sbjct: 459 AHAATQQQVQGAGLGLSICLRLSQEMGGRLT-AASQPGLGT 498


>gi|229917024|ref|YP_002885670.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229468453|gb|ACQ70225.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 132/236 (55%), Gaps = 14/236 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +T++ E  R    +K   V  VS+ELR+PLT+I+GF++LLK+ +L   N+K+ +Y++ 
Sbjct: 411 RDITQETEINR----LKTELVATVSHELRTPLTSILGFSELLKSRQLE--NTKRERYLDM 464

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I++ +  L  LV+D+LD+  ++AG+   ++    L DLL+++ +  A     +       
Sbjct: 465 IASETKRLERLVSDLLDVQKMEAGMSVPDFKVESLYDLLSDLLEIHAGSTEHHFFHF--- 521

Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D     FVA D  +L Q+FS IL+NA+ +S +G  V +    ++      + + G  + 
Sbjct: 522 -DCDESLFVAGDPAQLRQVFSNILNNAIKYSPRGGNVTVDVTCEDDTIQIGITDEGLGLS 580

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           E+    +F++F  +A    +R  G GLGL+I +  + LHGG +S+ S   EG T I
Sbjct: 581 EEDAARIFDKFYRSASEESKRIGGTGLGLAICKEIVQLHGGTISVQSQLGEGTTMI 636


>gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
 gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
          Length = 914

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L+S Q  Y++ I  S+  LL
Sbjct: 281 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSSSQQDYLQTIEKSANNLL 336

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
            ++NDILD + ++AG + L        D L+EV + +A   HE  + + +  D ++    
Sbjct: 337 TIINDILDFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGLELNLRIDPRIPAGV 396

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + ++ NA  F+ +G    +V LK  RD   +  F +++ G  I E    
Sbjct: 397 IGDPLRIQQVLTNLIGNATKFTERGHINVSVELKQQRDERLELQFVIRDTGIGISERQQS 456

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +  SS
Sbjct: 457 QLFQAFRQADTSISRRYGGTGLGLVITQKLVQQMGGDIGFSS 498


>gi|253568518|ref|ZP_04845929.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6]
 gi|251842591|gb|EES70671.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6]
          Length = 660

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 126/230 (54%), Gaps = 9/230 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E AL    E   +A+++K++FV ++S+E+R+PL  I+GF+ LL  +   +   +Q +Y 
Sbjct: 416 SEIALRHAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTVEAT--DEQKEYA 473

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNIRI 669
           + I  +S +LL L++D+LD++ +++G +   Y    ++N   N +  +   +  + ++R+
Sbjct: 474 DIIQTNSELLLQLISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTRKNRTRDIDVRL 533

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNG 727
           ++  +  +     D  RL Q+   +L+NA+ F+  G ++ L    D  D   +FSV + G
Sbjct: 534 QMPKEPYM--LYTDPLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTG 591

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           S IPED  + VF RF       Q  G GLGL+I +  I   GG + I  +
Sbjct: 592 SGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQRMGGDIWIDKN 639


>gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126]
          Length = 773

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 200/436 (45%), Gaps = 53/436 (12%)

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETKYN 430
           +TW+  + S+ K  E     W++    TL  ++ S PR    I +  +++ Q  LET+ +
Sbjct: 73  QTWQGEVHSLTKLGEP----WYV--FATLVPVIKSPPRVDHLIAIATDISEQKRLETRLS 126

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCS 488
                     D + EGV     +G  +  NPA   L  W  +E +   G    +      
Sbjct: 127 EGRAFYRSITDSIGEGVYAVNGEGTTQFLNPAASRLLGWSLDELQ---GRRFHDTV---- 179

Query: 489 RYYNESDGWDL------------FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--- 533
            +Y + DG  L                 TS++D     +G L  +S        +PL   
Sbjct: 180 -HYQKGDGTLLPREQCPVNLTIRSGQSYTSYEDFFTDKRGRLFPIS-----IVAVPLLDK 233

Query: 534 ---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              P+    + F +++     E+ L +  +  + A++ K+ F+  +S+E+R+P+  IIG 
Sbjct: 234 EGKPDGHVGV-FNDISGQKAIEQKLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGL 292

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T L   S   + N ++ QY+E +  SST LL+L+N ILD + V+A  +++      L   
Sbjct: 293 THLALES---TDNEQRQQYLEKVQRSSTALLDLMNSILDFSKVEADKIEIVDEPFTLTKT 349

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGST 707
           ++++ Q    K  +   +++++ D +  + +    D +++ Q+   +LSNA+ F++ G  
Sbjct: 350 IDKLAQVFQVKAQQK--QLQLLFDIRCHTNLQCRGDSEKIYQVLLNLLSNAIKFTASGHI 407

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           ++    R+N    FSV + G  I E +   +F  FV       R   G GLGL+I +  +
Sbjct: 408 ILTVEKREN-QLAFSVSDTGMGISEHVKSKLFKAFVQADASISREYGGTGLGLAICKRLV 466

Query: 766 NLHGGHVSISSS-DEG 780
            L GG +++ S  D+G
Sbjct: 467 ELMGGDLTLESEVDKG 482


>gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1877

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 22/234 (9%)

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            T   + L++ D++K++F+ ++S+ELR+PL +I+GFT+++     G +N      +  I  
Sbjct: 1618 TATMQRLQELDQLKSAFLANMSHELRTPLNSILGFTEVILEGINGPINDLIHNDLSIIHR 1677

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMH-------EN 665
            +   LLNL+NDILD+A +++G + L   T  + ++L+EV  ++   AT+ H       E 
Sbjct: 1678 NGRHLLNLINDILDMAKIESGKLTLFRETFDVVEVLHEVASTVGPLATQKHLELLVDIEP 1737

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            N+++ V          ADR R+ Q+   I+ NA+ F+ +GS  I          I  +++
Sbjct: 1738 NLKLPV---------YADRFRIRQVLLNIVGNALKFTEQGSVTIGIDTTPTTRMI-KIQD 1787

Query: 726  NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             G  IP D   ++F  F  V N+   +  G GLGL I    + +HGG +S+ SS
Sbjct: 1788 TGIGIPLDNQDTIFMEFHQVDNSTTRKAGGTGLGLPISRHLVEMHGGKLSMVSS 1841


>gi|260060733|ref|YP_003193813.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata
            HTCC2501]
 gi|88784863|gb|EAR16032.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata
            HTCC2501]
          Length = 1455

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 124/254 (48%), Gaps = 18/254 (7%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--------------S 597
            E+A   K  A   A+E K++F+  VS+ELR+PLT+++GF  +++                
Sbjct: 971  EQAREAKARA-EDANEAKSAFLSTVSHELRTPLTSVLGFAKIIRKRLTEKIFPAVTVDDQ 1029

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            K+     + S+ ++ + +    L  L+ND+LDLA +++G M  N   I L D++     +
Sbjct: 1030 KIKRTMKQVSENLDVVVSEGERLTTLINDVLDLAKIESGRMDWNMKPIFLQDVIGRAVSA 1089

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             ++   E  +++K      L     D  +L+Q+   +LSNA+ F+ KGS V + A R+  
Sbjct: 1090 TSSLFEEKKLQLKKNVPDDLPLINGDEDKLIQVVINLLSNAVKFTKKGS-VTIDAYREEN 1148

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              I  V++ G  I E+    +F RF    +    + +G GLGL I    I  HGG + + 
Sbjct: 1149 QLIVEVQDTGIGIAEEDKHKIFERFRQAGDTLTDKPQGTGLGLPICREIIEHHGGIIWMK 1208

Query: 776  SSDEGVTTINCRIP 789
            S     +T    IP
Sbjct: 1209 SEPGVGSTFFFSIP 1222


>gi|331086757|ref|ZP_08335834.1| hypothetical protein HMPREF0987_02137 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409923|gb|EGG89358.1| hypothetical protein HMPREF0987_02137 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 471

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+  ++ +  F+ +VS++ RSPLT+I G+ + +    +      Q +Y+  I   +  L 
Sbjct: 239 LKDMEDYQKKFIANVSHDFRSPLTSIKGYVEAIVDGTIP--QELQGKYLNIILFETERLT 296

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L  D+L L   D   + L+ +   L+D +     S         I I+++ D ++ +  
Sbjct: 297 DLTKDLLTLNEFDTKDLLLDKTNFNLHDTIKHTAASFEGTCTSKKISIELLFDPRIQNVF 356

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR ++ Q+   +L NA+ FS+  S+++L+    NG    SVK++G  IP+     V+ R
Sbjct: 357 ADRGKIQQVLYNLLDNAIKFSNPDSSIVLETTERNGKVFVSVKDSGIGIPKKSLTKVWER 416

Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  S+  RG+ ++G GLGL+IV+  I  HG ++++ S+ EGV T
Sbjct: 417 FYKSDLSRGKDKKGTGLGLAIVKEIIQAHGENINVIST-EGVGT 459


>gi|254559131|ref|YP_003066226.1| PAS sensor signal transduction histidine kinase [Methylobacterium
           extorquens DM4]
 gi|254266409|emb|CAX22173.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
          Length = 786

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 9/244 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           AER L +K  A   A++ K+ F+ ++S+ELR+PL  I+GF +L+++   GSL S + + Y
Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S T LL++++DIL ++ ++A  +KL    I L   LN     ++ +    ++ I
Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALNSALTLVSKEAASKSVSI 626

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +   G L   +AD + L QI   I+ NA+ F+ +   V L+    NG     + + G  
Sbjct: 627 DLELAGTL-HVLADERALQQILLNIIQNAVKFTPEQGRVALRGRSCNGFVHLFIGDTGIG 685

Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785
           IP+     +   F +  +N  R   +G GLGL+I  S   LHGG + I  S+EG+ T + 
Sbjct: 686 IPKTAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGIGTLVL 743

Query: 786 CRIP 789
            R+P
Sbjct: 744 VRLP 747


>gi|251770948|gb|EES51533.1| periplasmic sensor signal transduction histidine kinase
           [Leptospirillum ferrodiazotrophum]
          Length = 496

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 3/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL +    L +    K+ FV   S+ELR+PLT+I GF  +LK   LG LN +Q + +  
Sbjct: 248 RALNDMAHQLGELSRKKSEFVTIASHELRTPLTSIRGFIAMLKRQTLGPLNEEQQKSLSV 307

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++     L+ LVN +LDL  ++AG M+     + L   L+ + +        +    ++ 
Sbjct: 308 VAEEIDHLVTLVNQLLDLGRIEAGQMRPEIRELELVPFLDRIGERYRLTAQSSGRIFRME 367

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D ++ +F+  D  RL QI   +L NA  F+ +G  V L   RD     F + + G  +P
Sbjct: 368 VDPEIPAFIQTDAHRLAQILDNLLGNAFKFTQEGEEVSLVVKRDFTRIHFEISDTGIGVP 427

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +F++F   A    R   G+GLGL++ +  +   GG + I  +    T     +P
Sbjct: 428 PENIPFLFDKFYQVAPFDSRTKEGLGLGLAVTKGIVLALGGSIEIRQNIPKGTCARVTLP 487


>gi|302555751|ref|ZP_07308093.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302473369|gb|EFL36462.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1424

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L ++ + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 845  QARQELEDRAKQLSSASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 904

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M +    + L  LL+ V+ +      +  +  
Sbjct: 905  AGIIHSAGSDLLQLINDILDLSKVEAGKMDVAPERVPLRRLLDYVEATFRPMTTQKGLTF 964

Query: 670  KVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD---------NGD 718
             + S  G     V D  RL Q+   +LSNA+ F+ +G  T++++ A D          G 
Sbjct: 965  AITSAPGAPADLVTDDARLRQVLRNLLSNAVKFTERGGVTLLIEPASDAEVPEPVHRGGP 1024

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + F V++ G  IPE   +++F  F        R+  G GLGLSI     +L GG V++ 
Sbjct: 1025 VVAFRVEDTGIGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 1084

Query: 776  SSDEGVTTINCRIP 789
            S+    +T    +P
Sbjct: 1085 STPGQGSTFTLYLP 1098


>gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 545

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 427

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 428 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
 gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
          Length = 545

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ + +LL ++   +  K  E  I ++V +  ++ S
Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-S 427

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 428 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
 gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
          Length = 545

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ + +LL ++   +  K  E  I ++V +  ++ S
Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-S 427

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 428 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|229819354|ref|YP_002880880.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia
           cavernae DSM 12333]
 gi|229565267|gb|ACQ79118.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia
           cavernae DSM 12333]
          Length = 698

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 9/225 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ D +KN FV  +S+ELR+PLT+I G   LL     G ++ +  + V     SS  L  
Sbjct: 452 REVDRLKNEFVSVISHELRTPLTSIRGSLGLLAGGAAGPISDQARRMVTIALGSSERLTR 511

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFV 681
           L+NDIL++  ++AG   +  +   +  +L      +      + + +++   G + G   
Sbjct: 512 LINDILEVERMEAGAAPIELADHDVRTVLAAAVDQVQGLADADGVSVRL---GDVTGRVH 568

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
           AD  R++Q    +L NA+ FS++GS V++ AAR  G+F+ F V ++G  IP D  + +F 
Sbjct: 569 ADADRVVQTLINLLGNAIKFSARGSQVVV-AARPAGEFVEFRVVDHGRGIPPDRLEMIFG 627

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
           RF  V ++   ++ G GLGL+I  S +  HGG + + S+  EG T
Sbjct: 628 RFEQVDSSDAREKGGTGLGLAISRSIVERHGGRIWAQSTPGEGST 672


>gi|254417240|ref|ZP_05030985.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176046|gb|EDX71065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1359

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 126/249 (50%), Gaps = 12/249 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++TD   A+  L    E    A+  K+ F+  +S+E+R+P+  +IG T LL  ++L 
Sbjct: 699 TITDITDKKIAQEQLKAAKEEAETANRTKSDFLAMMSHEIRTPMNAVIGMTSLLLDTQL- 757

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              ++Q ++V+ I  SS  LL ++NDILD + +++G + L      L   + E  + +++
Sbjct: 758 --TAQQGEFVDIIRNSSDALLTIINDILDFSKIESGKLNLEEQPFDLRACIEESLELLSS 815

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAAR 714
           K  +  I +  + D ++  S V D  RL QI   ++SNA+ F+  G  VI      + + 
Sbjct: 816 KARDKGIELAYLMDSQIPESIVGDVTRLRQILVNLVSNAVKFTETGDVVISVTPTAEISE 875

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +     F+V++ G  I       +F  F  V  +   Q  G GLGL+I +    L GG +
Sbjct: 876 EQIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLGLAISQRLSELMGGKM 935

Query: 773 SISSSDEGV 781
            +  S+EGV
Sbjct: 936 WV-ESEEGV 943


>gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 597

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 182/395 (46%), Gaps = 33/395 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNP 461
           I+T++  GG    F  +  ++          K Q  +I   +++GV  F  DG I ++NP
Sbjct: 225 ILTNDEIGGLAMAFNQMGRRLQFNINALNQEKEQLASILSSMADGVITFNRDGEILITNP 284

Query: 462 A---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
               F   W  E+     G     +A    +        +LFA ++   +++ +S + TL
Sbjct: 285 PAERFLQAWYFEQ-----GNDAEAMAPLPPQVK------ELFARVVR--EEKEQSTEVTL 331

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +  +  +L   + PL   +TM     V  +V   R +TE+    R+ D+++  F+ +VS+
Sbjct: 332 QGRTWVIL---MTPL-YGKTM-----VRGAVAVLRDMTEE----RRLDKLRKDFIANVSH 378

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+  + G+++ +    + +   ++ +  + I   S  +  LVND+LDLA ++AG +
Sbjct: 379 ELRTPIAMLQGYSEAI-IDDIAASEKEKKEMAKVIYDESLRMGRLVNDLLDLARMEAGHI 437

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L Y  + L   +  V +       E  I +      +      D  R+ Q+ + ++ NA
Sbjct: 438 ELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIEIALDPDRIEQVLTNLIDNA 497

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           +  +  G TV L            V+++GS IPE+    VF RF     A    R G GL
Sbjct: 498 IRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDLPFVFERFYKADKARTRGRSGTGL 557

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL+I ++ +  H G +++ S     TT +  +P++
Sbjct: 558 GLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592


>gi|332701992|ref|ZP_08422080.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio africanus str. Walvis Bay]
 gi|332552141|gb|EGJ49185.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio africanus str. Walvis Bay]
          Length = 1935

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 22/251 (8%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LKTSKLGSLNSKQSQYVE 611
            AL  + E   +A   K+ F+ ++S+E+R+P+  I+G  +L  ++ S     +S+  +Y+ 
Sbjct: 1547 ALEAQKEVAEQATRAKSEFLANMSHEIRTPMNGILGMNELALMRVS-----DSQAREYLL 1601

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670
                S   LL+++NDILDL+ ++AG + L+     L D+L+   + ++    E  + I  
Sbjct: 1602 LAKKSGLALLDIINDILDLSKIEAGKIALDQEPFDLRDVLDSTLKPLSLGADEKGLHIHH 1661

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVK 724
             + D      + D+ RL Q+ + ++SNA+ FS +G   +        ++ D    +F+V 
Sbjct: 1662 TLEDCAPQRLIGDKGRLRQVLTNLVSNAVKFSDQGVVRVTVSNNGEASSPDRTQLLFTVA 1721

Query: 725  NNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEG 780
            + G  IP D   S+F  F    S+AH  +  G GLGL+I    + L GG + + S   +G
Sbjct: 1722 DQGIGIPPDKLASIFESFAQLKSSAHI-KYGGTGLGLTICRQLVELMGGSIWAESEVGKG 1780

Query: 781  VT---TINCRI 788
             T   TI C +
Sbjct: 1781 STFFFTIECDV 1791


>gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1282

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 123/507 (24%), Positives = 226/507 (44%), Gaps = 81/507 (15%)

Query: 317 VAIAIFDQNRYLQFHNRSFVEL--WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
            ++ I D +  +++ N+ FV+   + ++ A L  NP        L+S   +PE++  + W
Sbjct: 503 ASVVITDSDGTIEYVNQKFVQKSGFSVEEA-LGQNP------RILKSG-MMPEEIYKELW 554

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMF----ENLTVQVDLET 427
           +     +    E H       +G      V+ +P     GTI  F    E++T ++ +E 
Sbjct: 555 QTITAGLEWKGELHNKRK---DGTLYWEAVSISPIRNEQGTITHFIAIKEDITDRMRMEA 611

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     ++Q   I+ L  G+A+   + RI +  NP   SL+  +   +        I   
Sbjct: 612 ELRENERIQRTLIESLPIGLAIIDGESRIIEEVNPLAASLFGADRETI--------IGRE 663

Query: 487 CSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-- 541
           C  +    D  +L   II    + D+  +     L L +D     + +P+     M+T  
Sbjct: 664 CHHFLCPQD--ELSCPIIDRGLAVDNSDR-----LMLRADG----TTLPVLKTVRMITIK 712

Query: 542 --------FVNVTDSVRAERALTEKNEALR--------------KADEIKNSFVQHVSYE 579
                   FV++ +  +AE ++ E N  L                A   K+ F+ ++S+E
Sbjct: 713 GRRKLLECFVDIRERKQAEESVREANRQLEAAIVRAERLAREAESASRAKSQFLANMSHE 772

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIG T L   ++    + K+ ++++ +  S+  LL L+NDILD + ++AG +K
Sbjct: 773 IRTPMNAIIGMTHLAMQTRD---DDKRGRFLDTVRHSAESLLGLLNDILDFSKMEAGQLK 829

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNA 698
           L+ +      LL EV  ++     E  +R+ + I+       V D  RL QI   ++ NA
Sbjct: 830 LSTAPFSPRQLLEEVMATLQMPAGEKGLRLAMDIAPNLPPCLVGDDLRLRQILLNLVGNA 889

Query: 699 MDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749
           + F++ GS + L+  ++            F+V + G  I E+    +FN F    N++  
Sbjct: 890 IKFTAAGS-ITLRITQEQPSSGGSEPLIHFTVIDTGIGIAEEKRALIFNSFEQADNSYVR 948

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776
           Q  G GLGLSI +  + L GG + + S
Sbjct: 949 QYGGTGLGLSICKQLVTLMGGKIWVES 975


>gi|300856171|ref|YP_003781155.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium ljungdahlii DSM 13528]
 gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium ljungdahlii DSM 13528]
          Length = 949

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 127/245 (51%), Gaps = 10/245 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T+   AER L +  E    A+  K+ F+ ++S+E+R+P+  I GF DLL+++ 
Sbjct: 297 ICTAEDITEQRLAERELYKAKEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQST- 355

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+ +Q  ++    ++S +LL ++NDILD + ++A  + +      L + + +    +
Sbjct: 356 --NLSLEQKDFIREAKSASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLL 413

Query: 659 ATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
             K  E  + +  +IS+G     V D  RL QI + ++SNA+ F++KG   +    LK  
Sbjct: 414 VPKAVEKGLELYTMISEGVPEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTVDCLKEE 473

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            +     F VK+ G  I +D   ++F  F        R+  G GLGL+I    + + GG 
Sbjct: 474 NETAVLNFEVKDTGIGIRKDHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGE 533

Query: 772 VSISS 776
           + + S
Sbjct: 534 IHVES 538


>gi|269962211|ref|ZP_06176564.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833042|gb|EEZ87148.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 780

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 133/244 (54%), Gaps = 14/244 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+A  E  +A +K    K++ + +VS+E+R+PL  IIG+  +LK  K G+  S +   +E
Sbjct: 397 EKAAKEALDATKK----KSTLLSNVSHEIRTPLNAIIGYLHMLKIEKCGTYCSHE---LE 449

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS +S  +L++VND+LD   +D+   KL+   + +N +  +++++      +  +++ +
Sbjct: 450 GISTASNTILDIVNDLLDFERLDSVNYKLHPKHVAINKIARDLEKTFHPLAKQKGLKLNI 509

Query: 672 ISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           + +G  G+     D  R  Q  S I++NA+ F+  G   I   + D+ D     +F+V++
Sbjct: 510 VKEGIGGAHQLFIDELRFQQALSNIITNAIKFTDIGEIEI-SISMDSFDGQRMVVFAVRD 568

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  I ++  +++FN F       ++ G GLGL+I ++ INL GG +++ S  E  +   
Sbjct: 569 TGRGIRQEDLETIFNSFEQANQEDKQFGFGLGLAITKAIINLMGGVLAVESKIEQGSIFK 628

Query: 786 CRIP 789
             +P
Sbjct: 629 IALP 632


>gi|46578865|ref|YP_009673.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448277|gb|AAS94932.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough]
          Length = 1513

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 142/270 (52%), Gaps = 15/270 (5%)

Query: 532  PLPNAQ-TMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            PLP+   T   F+    ++TD+V A  ++ E ++   +A+  K+ F+ +VS+ELR+PL  
Sbjct: 1088 PLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNG 1147

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
             +G   +L+  +L SL+ +Q QYV     S   L+ L++DILDL+ ++AG + +      
Sbjct: 1148 ALG---MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCD 1204

Query: 647  LNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            + +L++EV  + +       I ++  I+ G       D  RL Q    ++ NA+ F+ KG
Sbjct: 1205 IRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKG 1264

Query: 706  ST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
               V    A   GD I    +V++ G  IPED  +S+F  F  +  ++  +  G+GLGL 
Sbjct: 1265 GVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLG 1324

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIP 789
            IV   + L GG + + S+ +  T ++  IP
Sbjct: 1325 IVCRLMELFGGSIEVESAPDMGTAMHFAIP 1354


>gi|305665542|ref|YP_003861829.1| multi-sensor hybrid histidine kinase [Maribacter sp. HTCC2170]
 gi|88710298|gb|EAR02530.1| multi-sensor hybrid histidine kinase [Maribacter sp. HTCC2170]
          Length = 511

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 138/261 (52%), Gaps = 22/261 (8%)

Query: 535 NAQTMLTFVNVTDSVRAERALTE--------------KNEALRKADEIKNSFVQHVSYEL 580
           N+  +L   ++TD   + +A+ +              KN  L + +  KN+F+Q+ S+EL
Sbjct: 88  NSHILLVIYDLTDHYLSYQAIAQARNESIINSELMVLKNIELEERERFKNTFIQNFSHEL 147

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT++I  T++++ ++L    + Q + V ++  S+  L  L+NDI+ ++ + +G ++L
Sbjct: 148 RNPLTSVISITNVIEGTELS---NDQQRMVSFLKESNANLKLLLNDIMSISMISSGKLQL 204

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
                 L  LL  V+ +  TK  + +++  +    K+  FV  DR RL Q+ + +L NA+
Sbjct: 205 RNKEFSLYRLLELVEFTYKTKAAQKSLKFIMNRGKKVPEFVEGDRLRLFQVITNLLDNAL 264

Query: 700 DFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
            F+++G+   TV +   R N     F V ++G  I E+   ++F  F      G+  G G
Sbjct: 265 KFTNEGNIGLTVKVNQKRANKVSLRFEVYDSGIGISEEKLDAIFESFTKLESEGKNEGSG 324

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGLSIV+    L G ++ ++S
Sbjct: 325 LGLSIVKGLAELMGSNIRVTS 345


>gi|90425981|ref|YP_534351.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90107995|gb|ABD90032.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 1022

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 11/259 (4%)

Query: 542 FVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           F     S RA+ R L         A+E K+ F+ ++S+E+R+PL  ++G  D+L  + L 
Sbjct: 277 FTMFARSARAQNRILKHAVRRAEAANEAKSEFLANMSHEIRTPLNGVLGMADVLMRTDLT 336

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +   Q  Y + I  S ++L+ ++ND+LD+A +D+G + +    + L   L E       
Sbjct: 337 PV---QRNYAQLIVTSGSLLMTILNDVLDMAKLDSGQLAIKPCKVELQLQLKEAASFYFA 393

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----D 715
           +  E ++ + +     +   V  D  RL QI   ++ NA+ F+SKG   ++ + +     
Sbjct: 394 QAREKDLELVLDVAPDVPRHVQLDPMRLRQILGNLIGNALKFTSKGGVAVIVSYQHQDEK 453

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVS 773
           +G    SV + G  + E+    +F RFV     GQ  R G GLGL+I +   N  GG + 
Sbjct: 454 SGRLHISVVDTGIGLTEEQQGKLFGRFVQAEDDGQRHREGTGLGLAICKKLCNAMGGEIG 513

Query: 774 ISSSDEGVTTINCRIPSKE 792
           ++S     +T +  IP  E
Sbjct: 514 VTSEKGVGSTFSFWIPVIE 532


>gi|262165828|ref|ZP_06033565.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
 gi|262025544|gb|EEY44212.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
          Length = 1194

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   Q  LT  N +T+    E AL +      +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 631 PINRRQYYLTLFNDITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGL 690

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     + S +SQ +   + +S   L + VNDILD + ++A  ++L+ +T  L D
Sbjct: 691 MEILASR----IKSNESQLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLAD 746

Query: 650 LLNEVKQSIATKMHENNIRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L  + +S         +   V    D +L   V D  RL QI + +LSNA+ F+ KGS 
Sbjct: 747 ELCPLLRSFEATADLQGLDFIVNWQPDARLLVQV-DALRLNQIITNLLSNALKFTEKGSI 805

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            I    +    F F V + G  + E    S+F  FV       RR  G GLG+SIV + +
Sbjct: 806 RIC-VEQSEQHFTFEVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLV 864

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            L GGH+ + S  +  TT+   +P
Sbjct: 865 ELMGGHIHVESEIDQGTTVRVSLP 888


>gi|311232728|gb|ADP85582.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris RCH1]
          Length = 1535

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 142/270 (52%), Gaps = 15/270 (5%)

Query: 532  PLPNAQ-TMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            PLP+   T   F+    ++TD+V A  ++ E ++   +A+  K+ F+ +VS+ELR+PL  
Sbjct: 1110 PLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNG 1169

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
             +G   +L+  +L SL+ +Q QYV     S   L+ L++DILDL+ ++AG + +      
Sbjct: 1170 ALG---MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCD 1226

Query: 647  LNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            + +L++EV  + +       I ++  I+ G       D  RL Q    ++ NA+ F+ KG
Sbjct: 1227 IRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKG 1286

Query: 706  ST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
               V    A   GD I    +V++ G  IPED  +S+F  F  +  ++  +  G+GLGL 
Sbjct: 1287 GVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLG 1346

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIP 789
            IV   + L GG + + S+ +  T ++  IP
Sbjct: 1347 IVCRLMELFGGSIEVESAPDMGTAMHFAIP 1376


>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1255

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 128/256 (50%), Gaps = 16/256 (6%)

Query: 533 LPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           LP  +T +  +  +VTD       L    +    A + K+ F+  +S+E+R+P+  I+G 
Sbjct: 559 LPGGETRVYGLLDDVTDERERALQLQAARDVAEAASQAKSQFMASMSHEIRTPMNGILGM 618

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL  ++L   + +Q ++ + +  S   LL ++ND+LD + ++AG ++L  +   L  L
Sbjct: 619 TELLLGTRL---DDRQRRFAQAVYRSGENLLEIINDVLDFSKIEAGRLELAPTDFNLRTL 675

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + +    +A + HE  + +     G + + V AD  RL Q+ + +++NA+ F+  G   +
Sbjct: 676 IEDTLDLLAPRAHEKGLELSFRETGDVPANVLADPLRLRQVLTNLVANAVKFTEHGEVTV 735

Query: 710 ----LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSI 760
               L   R     +  F V++ G  +  ++   +F  F + AH G  R   G GLGL+I
Sbjct: 736 DLRFLPRPRAGAPAMLEFRVRDTGIGMAAELLPRLFTAF-TQAHGGMARRYGGTGLGLAI 794

Query: 761 VESFINLHGGHVSISS 776
               + L GG + + S
Sbjct: 795 SRQLVELMGGQIDVVS 810


>gi|229543484|ref|ZP_04432544.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
 gi|229327904|gb|EEN93579.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
          Length = 921

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 129/258 (50%), Gaps = 17/258 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQ 608
           + +  L EK E L ++ + K+ F+ ++S+ELR+PL +I+  +++L   S+ G+L  +Q +
Sbjct: 500 KTKHQLEEKAEQLIQSSQYKSEFLANMSHELRTPLNSILLLSEMLADESEEGNLTEEQKE 559

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +   I +S + LLNL+NDILDL+ V+AG M++        +L   V    A    +  + 
Sbjct: 560 FARVIHSSGSDLLNLINDILDLSKVEAGKMEIVIEETNTRELPVYVGNQFAYLAEQKGLE 619

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI---- 720
           +K+  D  +   +  D++R  QI   +LSNA+ F+  GS        +A   G ++    
Sbjct: 620 LKIDVDDNVPDLIYTDQRRFQQIVKNLLSNAVKFTENGSVTFRMRKVSAETAGKYVKTEG 679

Query: 721 ------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  +V++ G  IPE     +F  F        R+  G GLGLSI   F  L GG +
Sbjct: 680 ADFWLEVAVQDTGIGIPEKKQDLIFEAFQQGDGATGRKYGGTGLGLSICREFARLLGGTI 739

Query: 773 SISSSDEGVTTINCRIPS 790
            + S+    +T    IPS
Sbjct: 740 CLDSTVGKGSTFILYIPS 757


>gi|77460443|ref|YP_349950.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384446|gb|ABA75959.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 922

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+
Sbjct: 280 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSA 335

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L++    L DLL +    +A   H   + +   V  D 
Sbjct: 336 DSLLGIINEILDFSKIEAGKLVLDHIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 395

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI---FSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A    +N D +    S+++ G  +
Sbjct: 396 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEENDDSVQLRISIQDTGIGL 453

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 454 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 502


>gi|60680336|ref|YP_210480.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491770|emb|CAH06528.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 919

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 169/354 (47%), Gaps = 50/354 (14%)

Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           K  GET D  LS  V V+    P+ R K+ +  +  +   EE        I    AT   
Sbjct: 585 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 640

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             NE + W     ++T F+ E     G +E++    + Y I  L   + ML         
Sbjct: 641 --NEWN-WVRMNVVVTKFEPE----HGEVEIIG---INYDITELKETEAMLI-------- 682

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                  E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y
Sbjct: 683 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 732

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +    I
Sbjct: 733 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQG---I 789

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ D      + ++DR RL Q+ S  ++NA+ F+S GS  +    ++ G   F V + G
Sbjct: 790 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 848

Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 849 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEE 897


>gi|332518960|ref|ZP_08395427.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
            5H-3-7-4]
 gi|332044808|gb|EGI81001.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
            5H-3-7-4]
          Length = 1474

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 131/234 (55%), Gaps = 10/234 (4%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A++ KN F+ ++S+E+R+P+++++GF DLL++  L     K+ +Y+E I  +S  LLNL+
Sbjct: 1105 ANKHKNFFLANMSHEIRTPISSVLGFADLLRSDDLTK--DKKLRYIEIIDNNSKQLLNLI 1162

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRIKVISDGKLGSF- 680
            +DI+D++ +++  +K+ Y    +  L+  +    + I  +  + +++++ I    L +  
Sbjct: 1163 DDIIDVSKIESDELKIVYKDCNVAQLIENLTLTFEQIKVQKEKTHLKLEAIIPSNLRNLN 1222

Query: 681  -VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
               D +RL Q+ S +++N++ FS KG T+     ++     F VK+ G  I +   K +F
Sbjct: 1223 ISTDPRRLEQVLSNLINNSIKFSDKG-TISYGFQKNENYLTFFVKDEGIGIAKCKQKEIF 1281

Query: 740  NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             RF  V+     +  G GLGLSI ++ + L GG +++ S     TT    IP K
Sbjct: 1282 ERFKQVNYKDSAKYGGTGLGLSICKAIVTLLGGDITVESKRYKGTTFKFNIPIK 1335


>gi|304309810|ref|YP_003809408.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
 gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
          Length = 816

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 14/224 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  +IG  DLL+ +KL   + +Q QY++ I  S   LL ++NDIL
Sbjct: 418 KSQFLAQMSHEIRTPMNGVIGMADLLRQTKL---DVQQKQYLDIIVNSGRTLLTIINDIL 474

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADRQ 685
           D + + AG M L    I    ++ E  Q       E  I +K   D K G+      D  
Sbjct: 475 DFSKIAAGKMDLEIRPIDFKQIVRECIQLFTLPAEEKAIYLK--KDWKEGASPIIYGDST 532

Query: 686 RLLQIFSKILSNAMDFSSKGS-TVILKAA-RDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
           RL Q+ + +LSNA+ F+ KG  T+ +K   RD+  ++   V++ G  I  +  + +F+ F
Sbjct: 533 RLRQVLTNLLSNALKFTEKGGITLRVKPCLRDSEPYLQVEVEDTGIGISVENQQRLFSAF 592

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
                   RR  G GLGL+I +  + L GG + +  S+EGV +I
Sbjct: 593 SQAEASTTRRFGGTGLGLAISKQLVELMGGEIGV-RSEEGVGSI 635


>gi|302382462|ref|YP_003818285.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193090|gb|ADL00662.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 580

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 125/260 (48%), Gaps = 16/260 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            V V  S    RAL + N+  R        A   K+ F+  VS+E+R+P+  +I   +LL
Sbjct: 171 IVAVRQSSMTTRALQDANDEARAERRKAEVASAAKSDFLAVVSHEIRTPMNAVISAANLL 230

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + ++L   + +Q ++V  +  +  +L+ L+ND+LD + ++AG M+L    I L D +  +
Sbjct: 231 RRTRL---DREQREHVSMLLDAGDVLVGLLNDVLDFSKIEAGKMQLEAQDIDLRDKIGSL 287

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +    K   N +R+KV I D        D  RL Q+   +LSNA+ F+  G+  I    
Sbjct: 288 IRLWEPKASANGVRLKVLIDDAAPARIRTDPLRLQQMLFNLLSNAVKFTEDGTISIAVDW 347

Query: 714 R-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769
           R ++G  I SV + G  IP D    +F+ F      G  R   G GLGL+I      + G
Sbjct: 348 RAEDGRLIVSVADTGCGIPADRLAHIFDSF-EQVDAGTTRKYGGTGLGLAISRRLAEIMG 406

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G ++  S +   +     +P
Sbjct: 407 GRLTAESVEGEGSVFTLSLP 426


>gi|298530450|ref|ZP_07017852.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509824|gb|EFI33728.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1162

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 11/249 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + +++     E+ +    +A  +A   K+ F+ ++S+E+R+PL  ++    LL+ + LG 
Sbjct: 383 YSDISQRKNYEKEIIRARDAAEEASRAKSDFLANMSHEIRTPLNGVVSMMSLLEETSLGP 442

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +Q +YV+  + SS  LLN++NDILD + ++AG ++L      L   ++ V   +  +
Sbjct: 443 ---EQREYVDMATISSESLLNIINDILDFSRIEAGRLELTRQNFDLEREISRVMLLLTKR 499

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
                + + V  D +    V  D  RL QI   ++ NA+ F+ KG  ++     +A  + 
Sbjct: 500 ARSKEVELLVDYDLQAPRRVRGDNLRLRQILYNLVGNAVKFTEKGYILVQVSLAEAGEEK 559

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                SV++ G  IP  M + +F  F    +   RR  G GLGL+I  S + L GG + +
Sbjct: 560 ARLKISVQDTGVGIPVHMQEKIFEHFTQVDYSSTRRHGGTGLGLAISRSLVRLMGGDLQV 619

Query: 775 SSSD-EGVT 782
            S + EG T
Sbjct: 620 MSREGEGST 628


>gi|254440106|ref|ZP_05053600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198255552|gb|EDY79866.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 803

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 15/274 (5%)

Query: 531 IPLPNAQT-----MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           + + NA+T      ++F+ +++  V AE  L    +    ++++K  F+  +S+E+R+PL
Sbjct: 281 LAIQNAKTDEGTIFISFLRDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPL 340

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++G  +LL+ ++L   N  Q +YV Y+  S  +LL+ V+D+LD+   DAG +      
Sbjct: 341 NGLLGNMNLLRDTEL---NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEP 397

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSS 703
           + +++LL ++  + A+   +N   +     G K+   ++D  RL  +   ++ NA+ F+ 
Sbjct: 398 VNISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTR 457

Query: 704 KGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGL 758
           +G   +       GD    +  + + G  + ED+ K VF+ FV+   A+     G GLGL
Sbjct: 458 RGKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGL 517

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           SI + F+N  GG + + S     +T   R+P  E
Sbjct: 518 SIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHE 551


>gi|169827424|ref|YP_001697582.1| hypothetical protein Bsph_1858 [Lysinibacillus sphaericus C3-41]
 gi|168991912|gb|ACA39452.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 364

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A++ KN  V ++++++++PLT++IG+  LL  +K   +  K+ +YV      S  L +
Sbjct: 136 QEAEQRKNDLVVYLAHDIKTPLTSMIGYLSLLDEAKDMPIEQKE-KYVTITLEKSYRLEH 194

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+  ++   +   + L   +I LN +L +V       +     +  V  DG++ +  A
Sbjct: 195 LINEFFEITRFNLQSIILEKESIPLNYMLMQVADEFYPLLAPRGQKAIVHIDGEI-TIYA 253

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L ++F+ IL NAM +S   ST+ + A  +N +   S  N G +IP +  K +F +F
Sbjct: 254 DGNKLARVFNNILKNAMAYSDPNSTIEISAKNENNETFISFSNTGKTIPSEKLKMIFEKF 313

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + NA   Q  G GLGL+I    +  HGG ++ +SS+E  T     +PS
Sbjct: 314 YRLDNARSTQTGGAGLGLAISNEIVQAHGGTITATSSNEK-TIFTVMLPS 362


>gi|87119494|ref|ZP_01075391.1| two-component system sensory histidine kinase [Marinomonas sp.
           MED121]
 gi|86164970|gb|EAQ66238.1| two-component system sensory histidine kinase [Marinomonas sp.
           MED121]
          Length = 910

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 131/248 (52%), Gaps = 9/248 (3%)

Query: 547 DSVRAERALTE--KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           D    ER   E  + EA+ KA+E+K+ F+  +S+ELR+PL  IIG T+++    +   + 
Sbjct: 396 DDAELERKEAENARAEAV-KANEVKSEFLAKMSHELRTPLNAIIGLTEMMHEDAIEFDDE 454

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              + ++ +  +   LLNL+NDILD++ ++AG M+L+     L   L +V  SI     +
Sbjct: 455 DYVEPLDRVLRAGKHLLNLINDILDISKIEAGKMELHRENFNLIMALEDVIASIKPLSDK 514

Query: 665 NNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            +I+++   D + LG    D+ RL QI   ++SNA+ F+ +G  V L A  +N     +V
Sbjct: 515 KSIKLE--GDFEVLGDHFNDQTRLKQILLNLMSNAVKFTDEG-VVTLSARTENDRLNIAV 571

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++G  + E+ C  +F  FV       R+  G GLGL+I   F  + GG + ++S     
Sbjct: 572 TDSGIGMNEEQCAGLFQDFVQVDSSSVRKHQGTGLGLAISRKFSRMMGGDIFVTSEVGKG 631

Query: 782 TTINCRIP 789
           +T    IP
Sbjct: 632 STFTLSIP 639


>gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1005

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 10/231 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  +A  +A + K+SF+ ++S+E+R+PL  IIG T L+   +L +   KQ  Y+  
Sbjct: 257 KDLAKARDAAEQASKAKSSFLANMSHEIRTPLNGIIGLTKLMLDLELSN---KQKDYMRK 313

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++ND+LDL+ ++AG ++++    V   +   +      K+ E  + +   
Sbjct: 314 IDRSAKALLGILNDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEEKGLELFFE 373

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727
            D ++      D  R+ Q+   ++SNA+ F+ +G   I     +  D     +FSV++ G
Sbjct: 374 IDPEIPQHLTGDPLRIKQVLINLVSNAVKFTDEGEIHIKAEVTEITDSDISILFSVRDTG 433

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             IP +  + +F  F        RR  G GLGL+I ++ +++ GG V++ S
Sbjct: 434 VGIPANELEKIFTAFTQVDETSTRRYEGTGLGLAITKNLVSMMGGTVTVES 484


>gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 869

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 12/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD   AE+AL    EA   A + K+ F+ ++S+E+R+PL  ++G   LL+TS  G   
Sbjct: 467 DITDRKNAEQALERAKEAAESASQAKSEFLANMSHEIRTPLNGVMGILQLLETSAEGQ-- 524

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q Q+      S+  L  L++DILDL+ V+AG + +      L++ L +V         
Sbjct: 525 -EQKQFCTLALQSANRLNRLLSDILDLSRVEAGKLHIQSEPFRLHETLVQVLDLFVPTAV 583

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDF 719
           ++ + ++  +  G   S V D  RL Q+   ++ NA  F++ G   +      A+  G  
Sbjct: 584 QSGVELRHHVDPGLPNSIVGDPIRLQQVLGNLIGNAFKFTTTGYVNVEAYPLPAKHPGQL 643

Query: 720 --IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              FSV + G  I +   K++F  F  VS  +    +G GLGLSI +  + L GG++++ 
Sbjct: 644 RIFFSVSDTGCGISDKDLKNLFTPFTQVSQGYAKSHQGAGLGLSICKHLVTLMGGNMAV- 702

Query: 776 SSDEGVTT 783
            S+ GV T
Sbjct: 703 ESETGVGT 710


>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 833

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 10/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T+ +VT+    E  L +  EA   A   K  F+ ++S+E+R+P+  IIG TDLL  S   
Sbjct: 147 TYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTDLLLDS--- 203

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           ++  +Q +Y++ + +S+  LL ++NDILD + ++AG + +      L+ +++E  +++A 
Sbjct: 204 TIAGEQREYLQTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSLHSVVSETCRALAL 263

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +  +  + +       + S +  D  RL QI   ++ NA+ F+  G   V ++  + NG 
Sbjct: 264 RASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGEVEVRVRCVQRNGG 323

Query: 719 FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F V++ G  I  D  +++F  F    +   R+  G GLGL+I      L GG + 
Sbjct: 324 AASIEFLVRDTGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAICRQLTELMGGRIG 383

Query: 774 ISS 776
           + S
Sbjct: 384 VDS 386


>gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71848542|gb|AAZ48038.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 845

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 8/253 (3%)

Query: 541 TFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +F  + DSV+   + L +  E   +A   K++F+  +S+ELR+PL  I+GF +LLK    
Sbjct: 591 SFNRMADSVQDSFKRLDDAREKAEEASRQKSAFLATMSHELRTPLNGILGFAELLKYE-- 648

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              N    +Y   I  S   LLNLVN+ILDLA ++AG M        L  L++E      
Sbjct: 649 -LDNPSHQEYATVIQQSGEHLLNLVNEILDLAKIEAGEMLFKRVPTPLAGLVSECVAGHQ 707

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                  +   + +++G     V D  RL QI + +LSNA+ F+ +G  + L       +
Sbjct: 708 VTATAKGLGFDLNVAEGLPEQLVTDPLRLRQILNNLLSNAVKFTEQGK-ISLTVRPAGQE 766

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+V + G+ IP +    VF +F  + +    +  G GLGLS+V       GG V++ S
Sbjct: 767 IAFAVSDTGAGIPPESLDMVFEKFKQLESFLTREHGGTGLGLSLVRQLAEHMGGRVTLES 826

Query: 777 SDEGVTTINCRIP 789
           +    +T    +P
Sbjct: 827 AVGVGSTFTVYLP 839


>gi|27378182|ref|NP_769711.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351329|dbj|BAC48336.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 634

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 3/249 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD   +E+AL +   A   AD  K  F+  +S+ELR+PL  IIGF+D++   +   L 
Sbjct: 336 DVTDRKLSEQALDQARSAAEAADAAKTRFLATMSHELRTPLNAIIGFSDMIAQEQALMLG 395

Query: 604 SKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + Q  +Y + I+ S   LL++VN ILD++ +++G  ++          L      +A K 
Sbjct: 396 AAQRKEYAQVINDSGQHLLSVVNGILDMSKMESGNFEIASEPFAPRASLMHCCNLLALKA 455

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            EN I +   +   L     D +   QI   +++NA+ F+ +G  V + AA         
Sbjct: 456 RENGIDLITDAPQDLPVMTGDPRAFKQIVLNLVANAIKFTERGGQVSVSAAVSGSHLTLR 515

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G  I  D  K +   F       QRR  G GLGLSIV+S + LH G +++ S    
Sbjct: 516 ISDTGVGIAPDDLKRIGAPFFQAGKTYQRRHEGTGLGLSIVKSLVALHLGDLTVQSRLGE 575

Query: 781 VTTINCRIP 789
            T +  ++P
Sbjct: 576 GTAVTVKLP 584


>gi|322420797|ref|YP_004200020.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127184|gb|ADW14744.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 933

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 126/248 (50%), Gaps = 13/248 (5%)

Query: 542 FVNVTDSVRAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            V V + V A+R    L  + + ++ A   K+ F+ ++ +E+R+P+  ++G + L   S+
Sbjct: 426 LVGVIEDVTAKREALELRRERDLVQAASRAKSEFLANMGHEIRTPMNAVMGLSRLALKSE 485

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L     KQ  Y+E I ++S  LLN++NDILD + ++AG ++L  + + L+++L  +    
Sbjct: 486 L---VPKQRGYLEKICSASRTLLNIINDILDFSKIEAGKVELEKTELSLHEVLGNISDMH 542

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             K  E  +  K+    +L    + D  RL Q+ + ++ NA+ F+ +G  V+     + G
Sbjct: 543 HLKAQEKGLDFKMRLAPELPRKLLGDPLRLTQVLNNLIGNALKFTRRGEVVVAVKPVEQG 602

Query: 718 DFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           + +    F V++ G  I  +  + +F  F        R+  G GLGLSI    + L GG 
Sbjct: 603 EGMVAVNFCVQDTGIGITPEQMEKIFTPFTQADSSTTRQYGGTGLGLSISRQLVELMGGE 662

Query: 772 VSISSSDE 779
           + + S  E
Sbjct: 663 LQVQSVPE 670


>gi|259414842|ref|ZP_05738765.1| sensor protein GacS [Silicibacter sp. TrichCH4B]
 gi|259349293|gb|EEW61040.1| sensor protein GacS [Silicibacter sp. TrichCH4B]
          Length = 466

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 28/246 (11%)

Query: 552 ERALTEKNEAL---RKADEIKNS----FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           E A+ E+   L   RK  E  NS    F+ H+S+E+R+PL  ++G    L  +    LN 
Sbjct: 58  EAAVLERTSELDTARKDAEAANSAKSVFLAHMSHEIRTPLNGVLGMAAALAET---DLNL 114

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q + +E +  S  +LL+++NDILDL  V+AG ++L+ +   +NDL   V +    ++ +
Sbjct: 115 EQQKMLEVLIESGDLLLSVLNDILDLTKVEAGELELDITPCSINDLFESVCKQFELQVRQ 174

Query: 665 NNIRIKVISDGKL------GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKA 712
             +   ++  G L        F  D  RL Q+   +LSNA+ F+ +G+  +      L  
Sbjct: 175 KGLSFAIVYGGMLEEDNVWAEF--DPTRLRQVLGNLLSNAVKFTLEGAITMKATVTQLND 232

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            R N D  FS+++ G  IPED    +F  F        RR  G GLGL I      L GG
Sbjct: 233 GRLNLD--FSIRDTGCGIPEDKQHRLFQPFAQADASISRRYGGTGLGLVISRKICQLMGG 290

Query: 771 HVSISS 776
            +S +S
Sbjct: 291 DISFTS 296


>gi|254562691|ref|YP_003069786.1| sensor protein gacS [Methylobacterium extorquens DM4]
 gi|254269969|emb|CAX25947.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium
           extorquens DM4]
          Length = 914

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  ++  +A+  K+ F+  +S+E+R+P+  ++   +LL ++ L     +Q +Y + I+
Sbjct: 259 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL---PPRQQRYAQVIA 315

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD A V+AG +++    +   D+ + V    A +     + +    D
Sbjct: 316 RSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSAGLDLAAQID 375

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF--SVKNNGSSI 730
           G +  S + D  RL Q+    +SNA+ F++ G  ++ ++  RD    +   +V + G  I
Sbjct: 376 GDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMERDASGPVLRIAVSDTGIGI 435

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+D    +F  F        RR  G GLGLSI E  I   GG V + S     +T   RI
Sbjct: 436 PQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESCLGEGSTFWARI 495

Query: 789 P 789
           P
Sbjct: 496 P 496


>gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
 gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
          Length = 545

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ + +LL ++   +  K  E  I ++V +  ++ S
Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-S 427

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 428 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|94970016|ref|YP_592064.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552066|gb|ABF41990.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 585

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 21/260 (8%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           LL       +  P+P    +    ++T++ R E+               +  F+ +VS+E
Sbjct: 313 LLPGRTFTATTAPMPGGGAVAVLHDLTETERVEKT--------------RRDFIANVSHE 358

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT+I G+ + L  S+    +    ++VE I  ++  +  L  D+L LA V++G  +
Sbjct: 359 LRTPLTSIQGYAETL--SEAFREDDPAREFVEIIRRNAQRMYRLTEDLLTLARVESGEQR 416

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           + +  +   +LL E + +         I + V++  + G    DR  L Q+FS +L NA+
Sbjct: 417 MEFHAVTPGELLAEAELNFQDHHRGAGIELSVMNTAQ-GEVEVDRDALRQVFSNLLDNAV 475

Query: 700 DFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
            +   G  ++L  +RD  D  +F +++ G  IP +    +F RF  V  A   Q  G GL
Sbjct: 476 KYGGTGGKILL-GSRDVEDRVLFYIRDFGPGIPSEHLARLFERFYRVDKARSVQSGGTGL 534

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL+I +  +  HGG +   S
Sbjct: 535 GLAIAKHIVRAHGGEIRAES 554


>gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 609

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 134/271 (49%), Gaps = 14/271 (5%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR------KADEIKNSFVQHVSYELRSP 583
           I+P   ++  +  V  T   R E  +T     L+      K +  +  FV +VS+ELR+P
Sbjct: 333 IVPREGSEPFMMRVTFTPIHRREIGITGTIAVLQDVTEQEKLEASRREFVANVSHELRTP 392

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           LT I  +T+ L+    G+L  KQ   ++V  I   +  ++ LV D+L L+ +D+    L+
Sbjct: 393 LTTIKSYTEALED---GALEDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALH 449

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                + ++L +V+   + +M + +IR  +     + + + DR  + Q+   ++SNA+ +
Sbjct: 450 KEPTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKY 509

Query: 702 SSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           +  G T+ + A+  + G    SVK+ G  IP+     +F RF  V  A      G GLGL
Sbjct: 510 TPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGL 569

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI    +  HGG +++ S  E  TT+   +P
Sbjct: 570 SIAREIVRAHGGFITLQSELEKGTTVTFTLP 600


>gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1336

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 171/386 (44%), Gaps = 47/386 (12%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD---- 495
           ++ L  GV V+  +G I  +N   + L++ E     P   + + A   + Y N +D    
Sbjct: 449 LEALPVGVLVYDKNGNIYYANQKLKDLFRHEH---IPEVSLEDFAGINNLYLNGTDQVYP 505

Query: 496 --GWDLFAAI------ITSFDDERK------SLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                L  A+      I + +          SL  T    SD  + Y I           
Sbjct: 506 TKALPLIRALKGKIVPIENIEIRHPDQTICCSLMATPIFDSDEAIVYGIA---------V 556

Query: 542 FVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           F ++T   +AE       + L EKN+AL++ DE+K+ F+ + S+ELR+PL  +IG ++ +
Sbjct: 557 FEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSESM 616

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G L   Q Q +  I+ S   L  LVNDILD + +    ++L    + L +++  +
Sbjct: 617 LDGVGGPLTELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELKLQPLGLREIVEVI 676

Query: 655 KQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              + +K    N  I++I++      +  AD  RL QI   ++ NA+ F+  G+  I  +
Sbjct: 677 --VVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLIGNAIKFTDSGTVKITAS 734

Query: 713 ARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
             D    +   + ++ + G  IP D    +F  F        R+  G GLGL+I +  + 
Sbjct: 735 VLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLVE 794

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
           LH G + + S  +  +T +  +P  E
Sbjct: 795 LHQGKIWLDSVVDSGSTFSFTLPISE 820


>gi|170748504|ref|YP_001754764.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655026|gb|ACB24081.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 909

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+E  +    A+  K++F+  +S+E+R+P+  ++   +LL  S L    ++Q +Y E I+
Sbjct: 260 LSEAKQVADAANAAKSAFLATMSHEIRTPMNGVLVMAELLAGSDL---PARQRRYAEVIA 316

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S   LL ++NDILD A V+AG ++L    +   +L +      A +     + +   ++
Sbjct: 317 RSGRSLLAIINDILDFAKVEAGKLELERVPVSPAELADTAVTLFAERARTAGLDLAAEVA 376

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIP 731
                + + D  RL Q+ S  +SNA+ F+  G  V ++ A D GD   + +V + G  IP
Sbjct: 377 PEVPHAILGDPVRLGQVLSNFVSNALKFTEAGH-VSVRMAIDAGDGCLVIAVSDTGIGIP 435

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +D   ++F+ F        RR  G GLGLSI +  +   GG V+++S     +T + RIP
Sbjct: 436 QDKLATIFSAFSQADQSTTRRFGGTGLGLSIAQQIVAAMGGTVAVTSRVGAGSTFSARIP 495


>gi|255535261|ref|YP_003095632.1| two-component sensor histidine kinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341457|gb|ACU07570.1| two-component sensor histidine kinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 576

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 116/215 (53%), Gaps = 1/215 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  VS+E ++P++++     LL+   +G+LN++Q + VE I   +  LL
Sbjct: 346 FKELDVAKTNFIGTVSHEFKTPISSMKMSIQLLENDHVGTLNTEQKELVENIKDDANRLL 405

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +  ++L+L  V++G ++L+       +L+    ++  T   +  + ++      +   +
Sbjct: 406 KITRELLNLTQVESGNIQLSQEPADPKELVRRAVEATKTPAEQKKMTVEATLPENVSQVL 465

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD ++ + I   ++SNA+ +S +G TV +K + +     F+VK+ GS IPE     VF+R
Sbjct: 466 ADEEKTVWILINLISNAIRYSYEGGTVKVKVSEEGDHVKFTVKDQGSGIPEQYLAKVFDR 525

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +       Q+ G GLGL+I + FI   GG + + S
Sbjct: 526 YF-RVPGTQKEGTGLGLAISKEFIEAQGGTLRVES 559


>gi|302344896|ref|YP_003813249.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
 gi|302149775|gb|ADK96037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
          Length = 878

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 5/255 (1%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +++ F+ +   V   R +  K      A++ K  F  ++S+ELR+PLT I    + +   
Sbjct: 343 SIILFLLIGIMVYIYRTILMKRRIEEDANKAKLQFFTNISHELRTPLTLIADPVNYIMHD 402

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +LNS+Q   ++ +  +  +L  LV++ILD   V  G M+L  S   L++ + +    
Sbjct: 403 D--NLNSQQRSMLQIVQRNVLVLTQLVSEILDFRKVQNGKMELRLSDFNLSESMKQWIML 460

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            +    + +I I + +   +    AD+ ++ +I   +LSNA+ ++S+G  + L A  +NG
Sbjct: 461 FSASAQKKHIAISMNAPDAV-MLRADQDKIERICYNLLSNALKYTSEGGEITLTAKEENG 519

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             + SV +NG  I  D    +F+RF    + G  RG G+GL+IV++F  LH G VS +S 
Sbjct: 520 RVMISVADNGCGISSDELPYIFDRFYQAKNAG--RGTGIGLAIVKAFTELHHGEVSATSV 577

Query: 778 DEGVTTINCRIPSKE 792
           +   +T    IP ++
Sbjct: 578 EGKGSTFTIHIPVRQ 592


>gi|169832041|ref|YP_001718023.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638885|gb|ACA60391.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 571

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           ALR+ ++++  FV +VS+ELR+PLT+I G  + L    + +  ++  +Y+      S  +
Sbjct: 335 ALRQLEQMRRDFVANVSHELRTPLTSIQGIIEGLIDGVIPA--AEAGRYLRVAHGESLRM 392

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+LDLA ++AG        + L ++L+ V+  +     E  + I+      L   
Sbjct: 393 NRLVQDLLDLAALEAGRADWELHAVELGEILDRVEIRLQAPRSEKGLAIRREVPPDLPPL 452

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +A+  RL Q+ + ++ NA+ FS  G  + + A  R +     +V++ G  IP +    V+
Sbjct: 453 LANENRLEQVLTNLVENAVRFSPPGGEITVAAEKRPHNRITVTVRDQGPGIPPEDLPHVW 512

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
           +RF  V  +   +  G GLGL+IV+  +   GG V++ SS  EG +
Sbjct: 513 DRFYRVEKSRARETGGTGLGLAIVKQIVEAQGGEVAVESSPGEGAS 558


>gi|81427893|ref|YP_394892.1| two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609534|emb|CAI54580.1| Two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 399

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 140/279 (50%), Gaps = 9/279 (3%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQ 574
           G L  ++D  LE+ I    N +       V DSV      T ++ E  RK ++ K+  + 
Sbjct: 112 GELHYIADGHLEHRI----NLRVNRDLQRVIDSVNTLVDSTVRSMEEERKIEKSKDELIT 167

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS++LR+PLT+IIG+  L++ ++  +   + ++Y       +  +  LV D+ +   V 
Sbjct: 168 NVSHDLRTPLTSIIGYLGLIEDNQYQT-KDELTKYTHTAYVKAQQMKVLVEDLFEYTKVR 226

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
                +  +T  +  +L ++  S   +  + N++I V          AD ++L ++F+ +
Sbjct: 227 QTSTPIAKTTFDMEQMLEQLAASFELEAQKKNMQITVECQPTPLMMEADTEKLGRVFNNL 286

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR- 752
           ++NA+ +   G  +IL A +   + I  V N+G  IP D    +F+RF    A R Q   
Sbjct: 287 IANALKYGKGGKQIILSAEKVGQEAIIKVSNDGQQIPSDSLNQLFDRFYRVEASRSQETG 346

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +S + LHGG++   S+ + +T+    +P K
Sbjct: 347 GTGLGLAITQSIVALHGGYIYADSTPQ-LTSFVIHLPLK 384


>gi|328957345|ref|YP_004374731.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673669|gb|AEB29715.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 583

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 124/238 (52%), Gaps = 12/238 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D ++N F+ ++S+ELR+PL  I G+++ +    +     ++ +  + I   S  +  
Sbjct: 344 KRLDIMRNDFINNISHELRTPLVMIQGYSEAI-LDDVAETQEEKKEMAKIIGEESIRMNR 402

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +VN++LD + ++AG + L    + L+D  N++    AT   +NNI +K+  D  L S+  
Sbjct: 403 MVNEMLDSSRMEAGFINLIKLDVQLDDFFNKLFTRFATMSEKNNIEMKLTIDPNLDSYYM 462

Query: 683 DRQRLLQIFSKILSNAMDFSS------KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           D  ++ Q+F  +++NA+  +S      K   + +   +   + +  V++NG+ I E+   
Sbjct: 463 DEDKMNQVFVNLINNAIRHTSLSNKENKKVEIWVHLEKIMDEILIEVRDNGTGISEEDVP 522

Query: 737 SVFNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            VF+RF          +G + G G+GLSIV++ I  HGG V + S     TT    +P
Sbjct: 523 YVFDRFYKADKSRTVMKGNKTGTGIGLSIVKNIIEAHGGFVEVKSVINEHTTFVVHLP 580


>gi|298244840|ref|ZP_06968646.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297552321|gb|EFH86186.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1110

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 122/238 (51%), Gaps = 11/238 (4%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISAS 616
            N A ++ ++ K+ F+   S+ELR+PLT +   T+LL  + ++ G+L+  Q+  +  +   
Sbjct: 876  NSARKELEQRKDDFISMASHELRNPLTALALHTNLLHRQLARHGTLD--QAPALSGMETQ 933

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               +  LV ++LD++ + AG ++     I L+ LL E    IA  M + +   +++  G 
Sbjct: 934  INKISRLVEELLDVSKMQAGRLEYREEMIDLDALLRE----IADTMQQTHPSHRILVGGA 989

Query: 677  L-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +  S +ADR RL Q+F  +LSNA+ +S    TV +  +         V+++G  IP + C
Sbjct: 990  VRTSLLADRDRLGQVFINLLSNAIKYSPGAETVEMDLSASREMVTIRVQDHGLGIPREQC 1049

Query: 736  KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F RF       QR   G+G+GL IV   +  HGG +++ S     +T     P K
Sbjct: 1050 DKIFERFYRATGSRQRAIPGLGMGLYIVAEIVKHHGGSITVDSEVGKGSTFTVIFPKK 1107


>gi|258621901|ref|ZP_05716931.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
 gi|258585839|gb|EEW10558.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
          Length = 1205

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   Q  LT  N +T+    E AL +      +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 640 PINRRQYYLTLFNDITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGL 699

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     + S +SQ +   + +S   L + VNDILD + ++A  ++L+ +T  L D
Sbjct: 700 MEILASR----IKSNESQLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLAD 755

Query: 650 LLNEVKQSIATKMHENNIRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L  + +S         +   V    D +L   V D  RL QI + +LSNA+ F+ KGS 
Sbjct: 756 ELCPLLRSFEATADLQGLDFIVNWQPDARLLVQV-DALRLNQIITNLLSNALKFTEKGSI 814

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            I    +    F F V + G  + E    S+F  FV       RR  G GLG+SIV + +
Sbjct: 815 RIC-VEQSEQHFTFEVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLV 873

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            L GGH+ + S  +  TT+   +P
Sbjct: 874 ELMGGHIHVESEIDQGTTVRVSLP 897


>gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1104

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 11/253 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T++   ++TD  +AE AL +  +    A+  K+ FV ++S+E+R+P+  +IG T LL  +
Sbjct: 424 TVVISRDITDRKKAEEALRKAKKDAETANIAKSQFVANMSHEIRTPMNGVIGMTGLLLDT 483

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+ +Q ++ E I +S+  LL ++NDILD + ++A  ++L      L   L +V   
Sbjct: 484 ---DLDERQREFAETIQSSAANLLTVINDILDFSKIEADKLELESIGFDLRFTLEDVSDL 540

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--- 713
           +A K    N+    + D  + S  V D  RL Q+   I +NA+ F+ +G  V+       
Sbjct: 541 LAIKAQAKNLEFVCMVDPDVPSLLVGDPGRLRQLIINICNNAIKFTREGEVVVRVVGEEI 600

Query: 714 -RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             D     F++ + G  IPED    +F  F        R   G GLGLSI +  + L  G
Sbjct: 601 KEDKAYLRFTITDTGIGIPEDKQNDLFAPFTQMDASTTREYGGTGLGLSICKRLVQLMNG 660

Query: 771 HVSISS-SDEGVT 782
            + +SS   EG T
Sbjct: 661 EIGVSSRPGEGAT 673



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            IDH  +G+AV G D RIK +NPA+ S+    +  +  G H R I  + ++Y NE
Sbjct: 201 AIDHSVDGIAVAGSDKRIKFANPAWASMHGLTQKEVE-GAHAR-IFHSTAQYENE 253


>gi|42522179|ref|NP_967559.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574710|emb|CAE78552.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 666

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 130/244 (53%), Gaps = 12/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ++ E+ +A  +A ++K+ F+ ++S+E+R+PL  IIGF+DLLK S L    S++ QYV  I
Sbjct: 284 SIGERQQA-EQASQLKSLFLANMSHEIRTPLAAIIGFSDLLKESNLD--ESERLQYVNII 340

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   L  ++NDILDL+ V+AG +++    + LN LL ++   +  ++ +  + ++   
Sbjct: 341 HRTGEHLTRIINDILDLSKVEAGHLEMQSHPVNLNSLLEDLHILMVARVGDKPVHVEFNR 400

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            G +   +  D  RL QI + I+ NA+ F+ +G  V +       + +F+VK+ G  I  
Sbjct: 401 RGIVPDMIRTDPLRLRQILTNIIGNAIKFTDQG-YVRMTYEISGSNLLFTVKDTGVGISS 459

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-----VTTIN 785
               ++F  F  + N+   +  G GLGL +      + GG V +  S+ G     +  I+
Sbjct: 460 AQRSNLFQAFSQIDNSVSRKYEGTGLGLVLSRRLAQMMGGDVHLEDSEPGKGCTFIVKIS 519

Query: 786 CRIP 789
             IP
Sbjct: 520 LDIP 523


>gi|329954548|ref|ZP_08295639.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328527516|gb|EGF54513.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 637

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E AL E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L      +    Q  Y 
Sbjct: 400 SEAALREAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLSAGD--TAIDDQRGYF 457

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I A+S +LL L+NDILD++ ++A  + L      +  +  +V  S+      +N RI 
Sbjct: 458 EIIKANSDLLLRLINDILDVSRLEADRVTLTLEKCDVVQVCMQVTASVTQARRSSN-RIV 516

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGS 728
             S         D QRL Q+   +LSNA  F+  G T+ LK   D  N   +FSV + G 
Sbjct: 517 FESAADSLEIRTDIQRLQQVVINLLSNADKFTENG-TITLKLEPDMRNRTALFSVSDTGC 575

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IP +  K VF RF       Q  G GLGLSI +  +   GG + I S
Sbjct: 576 GIPPEKRKRVFERFEKLNEYAQ--GTGLGLSICKLIVEKWGGRIWIDS 621


>gi|209885750|ref|YP_002289607.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5]
 gi|209873946|gb|ACI93742.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5]
          Length = 601

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 127/251 (50%), Gaps = 7/251 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E AL        +A   K+ F+  +S+ELR+PL  IIGF+++L       ++
Sbjct: 321 DVTERKAQEEALEIARREAEEAGASKSRFLATMSHELRTPLNAIIGFSEMLTHEDEMKID 380

Query: 604 S-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++ +Y   I+ S   LL++VN ILD++ +++G  +L        + L      +  K 
Sbjct: 381 AARRHEYAGLINESGLHLLSVVNGILDMSKMESGKFELVAEPFAPRETLASSCNLMVLKA 440

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +  + + + +   L     D +   QI   +LSNA+ F+ +G +V + A     +    
Sbjct: 441 RDKGVELVLRAPSDLPQMTGDARAFKQILLNLLSNAIKFTEEGGSVTVSAEVAGRELALR 500

Query: 723 VKNNGSSIPED----MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           V + G  I +D    + K+ F    S  + G+R G GLGLSIV++ + LHGG + + S  
Sbjct: 501 VTDTGIGIGKDDLAHLGKAFFQAGAS--YHGRREGTGLGLSIVKNLVALHGGEMRVDSEI 558

Query: 779 EGVTTINCRIP 789
           +  TT++ R+P
Sbjct: 559 DCGTTVSVRLP 569


>gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
 gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1710

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 134/263 (50%), Gaps = 18/263 (6%)

Query: 543  VNVTDSVRAE------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +++T+  +AE      R L  + EA   A+  K+ F+ ++S+ELR+PL  I+GFT LL  
Sbjct: 1214 IDITERKQAELERQRARELQREKEAAESANLAKSRFLANMSHELRTPLNAILGFTQLLL- 1272

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             +    + + S+Y+  I  S   LL L+NDIL L+ V+AG + L      L+ LL  ++ 
Sbjct: 1273 -RQPQFSGEPSEYLNIIHRSGKHLLGLINDILTLSKVEAGRIYLKTKPFDLSLLLKTLEN 1331

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-------STV 708
              + K     +++++ +D  +    + D  +L Q+   +LSNA+ F+S G       S  
Sbjct: 1332 MFSLKAANKRLQLEIKADANVPRGLIGDEDKLHQVLINLLSNAIKFTSFGEVCLTVRSQP 1391

Query: 709  ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766
            +      N  ++ F V++ G+ I  D  + +F  F+ + A    ++  GLGL+I   F+ 
Sbjct: 1392 VPAEMSSNSCYLQFEVRDTGAGINFDELEKIFEPFIQTEAGEKVKQSTGLGLAISREFVE 1451

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +++ S  +  +     IP
Sbjct: 1452 LMGGKITVESQLKHGSVFQFTIP 1474


>gi|167644163|ref|YP_001681826.1| histidine kinase [Caulobacter sp. K31]
 gi|167346593|gb|ABZ69328.1| histidine kinase [Caulobacter sp. K31]
          Length = 531

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 108/208 (51%), Gaps = 10/208 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E R+PL  ++G   LL+ ++L    ++Q  YV  +  S   LL+LVND+LD A + A
Sbjct: 18  LSHEFRTPLNGVLGMARLLEGTRL---TAEQRAYVGALRESGDHLLSLVNDVLDFARLGA 74

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             ++L+ +++ + +LL +V + ++ + HE NI I   +   L + +AD  RL Q+     
Sbjct: 75  TAIELHTASVDVENLLRQVAELLSPRAHEKNIEIAWAAAPGLPAILADEGRLRQVLLNYA 134

Query: 696 SNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHR 748
            NA+ F+  G     + +++  +   G   FSV++ G  +  +   ++F  FV    +H+
Sbjct: 135 GNAIKFTETGGVLLSAELVVPTSDSEGRLRFSVRDTGPGVAPEARAAIFEAFVQTDPSHQ 194

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776
            Q  G GLGL+IV        G   +  
Sbjct: 195 AQLGGAGLGLAIVARLAGAMSGEAGVGG 222


>gi|116053634|ref|YP_793961.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296392349|ref|ZP_06881824.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
 gi|313111575|ref|ZP_07797374.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|115588855|gb|ABJ14870.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310883876|gb|EFQ42470.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 595

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 164/347 (47%), Gaps = 35/347 (10%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            +D + +G+ +F   GRI+ +NP A R L+ + +     G  I  I +       E+   
Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILSDVD--VQEA--- 314

Query: 498 DLFAAIITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVR 550
            +  A++    DE        +L+ D      +L +S+ P+  P   ++   + V D   
Sbjct: 315 -VEKALLGEVQDE-----AMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRD--- 365

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               +TE+    R  + +++ FV   S+ELR+P+T +     LL+        S+++  +
Sbjct: 366 ----VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLI 417

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +    + L+ L+ND+L+ +    G+ KL  ++  L DLL + +Q    K     + ++
Sbjct: 418 QTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFTPKGEARRVSLQ 477

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +    +L     DR ++ ++   +L NA+  SS+G  + L+A R     + +V++NG  I
Sbjct: 478 LELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGI 537

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           P      +F  FV    +  + G GLGL++ +  I LHGG +++ S 
Sbjct: 538 PFSQQGRIFEPFVQVGRK--KGGAGLGLALCKEIIQLHGGRIAVRSQ 582


>gi|310780111|ref|YP_003968443.1| histidine kinase [Ilyobacter polytropus DSM 2926]
 gi|309749434|gb|ADO84095.1| histidine kinase [Ilyobacter polytropus DSM 2926]
          Length = 780

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 133/247 (53%), Gaps = 9/247 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE  L E    L  A  IK +F+ +VS+EL++PLT ++GFT LL   +    + K+ + 
Sbjct: 528 KAEIKLLETKRELENALNIKTAFLANVSHELKTPLTAVMGFTKLLLKRE---DDPKKQKL 584

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNI 667
           +E I  +   L+  +++ILDL+ ++AG ++L Y  I L ++++ + + I   +++  N  
Sbjct: 585 LENIQVAGDTLVTFIDNILDLSKLEAGKVELKYRRINLRNMIDNI-ERICNGLNKGRNVF 643

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            I  +++     F+ D  RL ++   +++NA  F+  G  V +K    N     S+ + G
Sbjct: 644 FIMNVTEKVPKYFMGDEVRLTEVILNLVNNAFKFTKFGK-VEVKFDSYNDKLFISITDTG 702

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP+D   S+F R+  +      +++G GLGL+IV+  +++  G + + S  +  TT  
Sbjct: 703 MGIPQDKLSSIFERYHQLDLNENIEKKGFGLGLTIVKEIVDMMEGEIEVKSKHKEWTTFK 762

Query: 786 CRIPSKE 792
             IP K+
Sbjct: 763 ITIPIKK 769


>gi|310818443|ref|YP_003950801.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391515|gb|ADO68974.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 661

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 15/235 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  RAE       EAL  A E K++F+   S+ELR+PL    G   L      G   
Sbjct: 401 DITERKRAE-------EALLLASEAKDAFLAAASHELRTPLAAAKGHAHLALLKLGGEGE 453

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATK 661
           +   + ++ I+     +  LV D+LD++ + AG + L+     L  L+ E   +  + ++
Sbjct: 454 TGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQ 513

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +H   + ++   +G     + DR RL Q+ + +LSNA+ +S +G  V++KAA D      
Sbjct: 514 LHPLRVELQEQLEG-----LWDRGRLDQVLTNLLSNAIRYSPEGGEVLVKAAADGEGVQL 568

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           SVK+ G  IP +    +F RF   AH  +  G+GLGL+I +  +  HGG + + S
Sbjct: 569 SVKDCGVGIPPEKQGLIFERF-GRAHGSKYGGLGLGLTISQGIVEQHGGRIWVDS 622


>gi|241895289|ref|ZP_04782585.1| sensor histidine kinase [Weissella paramesenteroides ATCC 33313]
 gi|241871595|gb|EER75346.1| sensor histidine kinase [Weissella paramesenteroides ATCC 33313]
          Length = 375

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 12/236 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A++A+ E++E  R  DE+    V +VS++LR+PLT+I+G+  L+     G    ++ + +
Sbjct: 126 AQQAMMEEHEIERSKDEM----VTNVSHDLRTPLTSILGYLGLIINDN-GQQKLRREEIM 180

Query: 611 EYISAS---STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   +   S  + +LV D+ D   V     KL+++ + L  +L ++  +   +  +  +
Sbjct: 181 KYAQTAFDKSGQMKSLVEDLFDYTQVHQVDFKLHWAPLDLAAMLQQLAVNYELEAEQKGV 240

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKN 725
            I  +S+  +   V D  RL ++F  +++NA+ +    + V L  KA  +       V N
Sbjct: 241 VISAVSNPAVIEMVGDPDRLARVFMNLINNALKYGEGATFVRLSAKAVTEENQVEIRVTN 300

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           NG+ IP++  K +F+RF  V ++   +  G GLGL+IV   IN HGG V + S D+
Sbjct: 301 NGAKIPDESIKRLFDRFYRVESSRNTKTGGTGLGLAIVNGVINAHGGQVRVESDDK 356


>gi|163792404|ref|ZP_02186381.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159182109|gb|EDP66618.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 374

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERA   KNEA   A+  K+ F+ +VS+ELR+PL  I+GF++++K+  L S   +   Y  
Sbjct: 137 ERA---KNEA-ETANRAKSDFLANVSHELRTPLNAILGFSEIIKSDTLDS--GRYPDYAA 190

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL+L+NDILDL  +++G   ++   + L+ L   + + +     +  IR++ 
Sbjct: 191 AIHKSGQHLLSLINDILDLNAIESGRFVISPERLNLHALTTSIVEMVRPIAQDAGIRLRT 250

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSI 730
                  + + DR+ + Q    +LSNA+ FS +G  V L   A   G    +V + G  +
Sbjct: 251 TVPKDFPAVLLDRRAMEQCLLNLLSNAIKFSHRGGAVDLSVGAAPTGGVCIAVVDTGVGM 310

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +  K++   F S      +RG GLGL+I +S +    G + I S+
Sbjct: 311 ASETIKAIGQPFASPGGHVDKRGAGLGLAITKSIVGAMKGELEIQST 357


>gi|83952587|ref|ZP_00961318.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM]
 gi|83836260|gb|EAP75558.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM]
          Length = 594

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 146/301 (48%), Gaps = 12/301 (3%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--------QTMLTFVNVTDSVRA 551
            A I+ + D ++ + +G    L+D + E  I+P+ +            ++ V++T+   +
Sbjct: 292 LAPILNTLDRDQSTARGAPVPLADRIFEPRILPIESPIRTRRNLLGWTISLVDITEREHS 351

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            +AL E       A+  K+ F+  +S+ELR+P+T++ G  DL      G  +    + + 
Sbjct: 352 AQALREALVRAEAANHAKSQFIAMISHELRTPMTSVKGGLDLALNGFPGEPSEPIRKLLN 411

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               +S  +L L++D+LDL  +D   ++L+   + +++LL  + +  A +  +  +R+ +
Sbjct: 412 IAQRNSMRMLKLIDDVLDLQKLDLNTLRLHPVALDMDELLANLLEEHAGQADQAKVRLTI 471

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +SD K+G  V  D  R+ Q+   ++SNA+ FS +G+ V L           SV+++G  I
Sbjct: 472 VSD-KIGQQVHVDPNRVRQVVGNVISNAIKFSPEGAHVDLSVQLKPEALRLSVRDSGIGI 530

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      VF RF  + +       G GLG+ I +  I   GG +S  S     T  +  +
Sbjct: 531 PAKSEDRVFGRFHQIESDLTPTHGGSGLGMHIAKVLIERMGGAISYESVLGQGTVFHIDL 590

Query: 789 P 789
           P
Sbjct: 591 P 591


>gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 870

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 137/259 (52%), Gaps = 18/259 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+VT+    E+A   K+ A   A + K+ F+ ++S+E+R+P+  I+GFT LL  S L +
Sbjct: 362 LVDVTERREKEKAERAKDTA-EAASKAKSEFLANMSHEIRTPMNAILGFTSLL--SPLIT 418

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + +Q  Y++ I +S   L++L+NDILDL+ ++AG M++ Y  +VL  +  ++++  +  
Sbjct: 419 -DPRQKNYLQSIQSSGKNLMSLINDILDLSKIEAGKMEIQYEPVVLRSVFVDLEKVFSWI 477

Query: 662 MHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
           + +  ++ I  I+       + D  RL QI   ++ NA+ F+  G  + L A R+ G   
Sbjct: 478 IQDKGLQFITSIASDVPECVLLDEVRLRQILFNLVGNALRFTESG-WIRLSAWREAGAGD 536

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGG 770
                +  V++ G  I  +    +F  F   +  GQR     G GLGL+I +S + + GG
Sbjct: 537 GSFCLVMVVEDTGMGIQPEAHNRIFESFRQQS--GQRARVYGGTGLGLTISKSLVEMLGG 594

Query: 771 HVSISSSDEGVTTINCRIP 789
            +S+ S     +    R+P
Sbjct: 595 TISVQSRPGAGSVFEIRLP 613


>gi|289627276|ref|ZP_06460230.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289650434|ref|ZP_06481777.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869471|gb|EGH04180.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 778

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516
           F   +  EE    P   +R  A    RY  ES     DG   +A++ IT+  D    L+G
Sbjct: 315 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 373

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             ++  D                     ++D   AE AL    E   +A   K+ F+  +
Sbjct: 374 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 412

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I+GF  LL      S    Q   + +I  +   LL L+N++LD+A ++AG
Sbjct: 413 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 468

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694
            + L+   + L+ +L E    ++    + NI +K +     KLG  VADRQRL+Q+   +
Sbjct: 469 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 527

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           LSNA+ ++     V ++  + +     SV + G  I  +    +F  F          G 
Sbjct: 528 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 587

Query: 755 GLGLSIVESFINLHGGHVSISSS 777
           GLGL++ +S + +  G +S+ ++
Sbjct: 588 GLGLALSKSMLEMMHGTLSVQNT 610


>gi|207721961|ref|YP_002252399.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           MolK2]
 gi|206587133|emb|CAQ17717.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           MolK2]
          Length = 875

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 14/248 (5%)

Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           ERA  +  EA R+A E     K+ F+  +S+E+R+P+  ++G  +LL  + L     +Q 
Sbjct: 358 ERARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPL---EREQQ 414

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + V     SS  LL++++DILD A ++AG + +  +   L +L +     +A++ HE ++
Sbjct: 415 RMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTVGLLASRAHERSL 474

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFS 722
            ++V  D  + + V+ D  RL Q+ S +LSNA+ F+ +G    S   + AA D    I  
Sbjct: 475 SVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACVGAATDTAHLIIR 534

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G  I  +   ++F  FV       RR  G GLGL+I      L GG + + S+   
Sbjct: 535 IADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLMGGSLDMDSTPGV 594

Query: 781 VTTINCRI 788
            TT+  R+
Sbjct: 595 GTTLTLRL 602


>gi|115377643|ref|ZP_01464838.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365352|gb|EAU64392.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 593

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 15/235 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  RAE       EAL  A E K++F+   S+ELR+PL    G   L      G   
Sbjct: 333 DITERKRAE-------EALLLASEAKDAFLAAASHELRTPLAAAKGHAHLALLKLGGEGE 385

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATK 661
           +   + ++ I+     +  LV D+LD++ + AG + L+     L  L+ E   +  + ++
Sbjct: 386 TGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQ 445

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +H   + ++   +G     + DR RL Q+ + +LSNA+ +S +G  V++KAA D      
Sbjct: 446 LHPLRVELQEQLEG-----LWDRGRLDQVLTNLLSNAIRYSPEGGEVLVKAAADGEGVQL 500

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           SVK+ G  IP +    +F RF   AH  +  G+GLGL+I +  +  HGG + + S
Sbjct: 501 SVKDCGVGIPPEKQGLIFERF-GRAHGSKYGGLGLGLTISQGIVEQHGGRIWVDS 554


>gi|4104606|gb|AAD10266.1| putative histidine kinase [Lactobacillus sakei subsp. sakei 23K]
          Length = 399

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 140/279 (50%), Gaps = 9/279 (3%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQ 574
           G L  ++D  LE+ I    N +       V DSV      T ++ E  RK ++ K+  + 
Sbjct: 112 GELHYIADGHLEHRI----NLRVNRDLQRVIDSVNTLVDSTVRSMEEERKIEKSKDELIT 167

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS++LR+PLT+IIG+  L++ ++  +   + ++Y       +  +  LV D+ +   V 
Sbjct: 168 NVSHDLRTPLTSIIGYLGLIEDNQYQT-KDELTKYTHTAYVKAQQMKVLVEDLFEYTKVR 226

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
                +  +T  +  +L ++  S   +  + N++I V          AD ++L ++F+ +
Sbjct: 227 QTSTPIAKTTFDMEQMLEQLAASFELEAQKKNMQITVECQPTPLMMEADTEKLGRVFNNL 286

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR- 752
           ++NA+ +   G  +IL A +   + I  V N+G  IP D    +F+RF    A R Q   
Sbjct: 287 IANALKYGKGGKQIILSAEKVGQEAIIKVSNDGQQIPSDSLNQLFDRFYRVEASRSQETG 346

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +S + LHGG++   S+ + +T+    +P K
Sbjct: 347 GTGLGLAITQSIVALHGGYIYADSTPQ-LTSFVIHLPLK 384


>gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG]
          Length = 1307

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 708 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFA 767

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  + + LL L+NDILDL+ V+AG M+++ + I L  L++ V+ +      E N+   
Sbjct: 768 ETIYGAGSDLLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFS 827

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720
           V +S     +   D QRLLQ+   +LSNA+ F+  G+   +I  A  D  D I       
Sbjct: 828 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEA 887

Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                       FSV + G  I E   + +F  F        R+  G GLGLSI      
Sbjct: 888 GSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 947

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L GG +   S     +T    +P
Sbjct: 948 LLGGEIDAQSQPGRGSTFTLYLP 970


>gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
 gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
          Length = 950

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 443 VLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 502

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              S     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +  +
Sbjct: 503 ---SGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLS 559

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL A    G  
Sbjct: 560 LVVKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAWVAEGYL 618

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  IP      +F+ F       QR  +G GLGL+I E  IN+  G + + S 
Sbjct: 619 AFRVRDTGVGIPAKELPRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSE 678

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 679 PGMGSQFIVRIP 690


>gi|297584464|ref|YP_003700244.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297142921|gb|ADH99678.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 603

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 127/248 (51%), Gaps = 7/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V  +V   R +TE+    R  D+++  F+ +VS+ELR+P++ + G+++ +     GS +
Sbjct: 349 HVRGAVAVMRDMTEE----RLHDKLRKDFIANVSHELRTPISMLQGYSEAIIDDVAGS-D 403

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +  + I   S  +  LVN++LDLA ++AG ++LN   + + + +  + +       
Sbjct: 404 EEKKELAQIIYDESLRMGRLVNELLDLARIEAGHIRLNLEPVNMTEFVERISRKFQGVAD 463

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +NN+ +    D        D  R+ Q+ + ++ NA+ ++S   +V L+       F   V
Sbjct: 464 DNNVELMGEIDQSDTEAYVDPDRIEQVMTNLIDNAIRYTSVNGSVKLRLEELPAGFRLDV 523

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G+ IPE+    VF RF     A    R G GLGL+IV++ +  H G VS  S     
Sbjct: 524 EDTGAGIPEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHKGRVSAHSRMGEG 583

Query: 782 TTINCRIP 789
           TT +  +P
Sbjct: 584 TTFSVFLP 591


>gi|92114785|ref|YP_574713.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
 gi|91797875|gb|ABE60014.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
          Length = 737

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 22/248 (8%)

Query: 542 FVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           F    D++ A +AL   ++ L+        A++ K+ F+  VS+E+R+PL  ++G T+LL
Sbjct: 203 FQEAGDNIAARQALEHLSQELKDTAREAESANQAKSDFLATVSHEIRTPLNGVLGMTELL 262

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +  +L   +    QYVE I  S + LL L++D+LD + ++AG +++   T  L  L++ +
Sbjct: 263 REREL---DGTSHQYVETIHESGSQLLTLISDLLDFSKIEAGHLEIERETFSLQALIDSL 319

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713
            + +  +     + I  ++       + D  RL Q+   +LSNA+ F+S+GS T+I+K  
Sbjct: 320 LRLLEPRAQHVEL-ISDVAPSVPSHSLGDAGRLRQVLLNLLSNALKFTSRGSVTLIVKPM 378

Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA----HRGQRRGVGLGLSIVESFINLH 768
           R  GD++ F V++ G  I +   + +F  F   A    ++G   G GLGL+I +  +   
Sbjct: 379 R--GDWMHFEVRDTGCGIEDADPQRLFQPFYQGASAVHYQG---GTGLGLAISKRLVEAM 433

Query: 769 GGHVSISS 776
            G + +SS
Sbjct: 434 QGRIGVSS 441


>gi|327482684|gb|AEA85994.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 854

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 7/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LTE+    ++ +++KN FV  VS+ELR+PLT+I G   L+    LG       Q +E   
Sbjct: 486 LTER----KRIEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGKAPPSMQQMLEIAY 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++S  L +L+ND+LD+  + AG M        L +LL E   S      ++ +R  +   
Sbjct: 542 SNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHA 601

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +  +V D  RL Q+    LSNA  F+  G  + + ++        SV + G  IPE  
Sbjct: 602 TDVRVWV-DGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLRGQRVRISVTDQGPGIPEAF 660

Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF +F     +   Q+ G GLGL+I +  I   GG V         TT  C +P
Sbjct: 661 RSRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELP 717


>gi|212218529|ref|YP_002305316.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|212012791|gb|ACJ20171.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 683

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 138/253 (54%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+   E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+
Sbjct: 281 DVTNDALREKEPWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 337

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   ++ IS +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H
Sbjct: 338 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 397

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           +  I++K      + S V  D +R+ Q+   +LSNA+ F+ KG   +    LK       
Sbjct: 398 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 457

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+VK+ G  + +    S+FNRF  +++ ++ +  GVGLGLSIV+  +   GG +S++S
Sbjct: 458 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTS 517

Query: 777 SDEGVTTINCRIP 789
                +   C IP
Sbjct: 518 EPGVGSEFTCIIP 530


>gi|182434881|ref|YP_001822600.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178463397|dbj|BAG17917.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 682

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +E + + V  V++ELR+PL+NI G+   L+ ++ G L      +V  +   + +L ++++
Sbjct: 451 EEQRKAMVSDVAHELRTPLSNIRGW---LEAAQDG-LADPDPAFVSSLLEEAVLLQHIID 506

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+ DLA  DAG+++L+   +   +LL +V  +   +     + + V       +  AD  
Sbjct: 507 DLQDLAAADAGVLRLHPEPVEARELLGQVAAAHQARAENAGVTLTVAGAAPGPALRADPV 566

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           RL Q    ++SNA+  + +G  V L+A     + G  +  V + GS IP +    VF+RF
Sbjct: 567 RLRQAVGNLVSNAVRHTPEGGRVTLRAYACEEEAGTVLVEVADTGSGIPAEDLPHVFDRF 626

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIP 789
                   RR  G GLGL+IV   +  HGG V  +S + EG T +  R+P
Sbjct: 627 WRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVDAASVAGEGSTFV-LRLP 675


>gi|330989302|gb|EGH87405.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 778

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516
           F   +  EE    P   +R  A    RY  ES     DG   +A++ IT+  D    L+G
Sbjct: 315 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 373

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             ++  D                     ++D   AE AL    E   +A   K+ F+  +
Sbjct: 374 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 412

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I+GF  LL      S    Q   + +I  +   LL L+N++LD+A ++AG
Sbjct: 413 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 468

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694
            + L+   + L+ +L E    ++    + NI +K +     KLG  VADRQRL+Q+   +
Sbjct: 469 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 527

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           LSNA+ ++     V ++  + +     SV + G  I  +    +F  F          G 
Sbjct: 528 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 587

Query: 755 GLGLSIVESFINLHGGHVSISSS 777
           GLGL++ +S + +  G +S+ ++
Sbjct: 588 GLGLALSKSMLEMMHGTLSVQNT 610


>gi|84501217|ref|ZP_00999422.1| hypothetical protein OB2597_12668 [Oceanicola batsensis HTCC2597]
 gi|84390508|gb|EAQ02996.1| hypothetical protein OB2597_12668 [Oceanicola batsensis HTCC2597]
          Length = 508

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 6/240 (2%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           LT T+     L++ +AIFD++R L   N + ++L  +   FL+  P +    + LR+   
Sbjct: 258 LTKTFA---QLSIGLAIFDRHRRLALFNPALIDLTALSPDFLSGRPDHLSFFDRLRNEMI 314

Query: 365 LPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           +PE  ++ TW++ I  V  ++E  ++++TW LP+G T  V    +P G   ++FE+++ +
Sbjct: 315 MPEPRDYTTWRDKIIDVIAAAENGSYEETWTLPHGSTYRVTGRPHPNGAVAFLFEDISAE 374

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           V L  ++   + +    +D L + +AVF P G +  +N A+R LW            +  
Sbjct: 375 VTLTRRFREQIDLSQAAMDSLDDALAVFSPQGVLSYTNTAYRELWNIPGEDRPLDLRVSE 434

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           ++ T   + +    W  F      F +ER      + +     L+    PL    T+  F
Sbjct: 435 VSRTWQEHCDPDPVWGDFRDFAVGF-EERTEWDARVRMQDGRGLDCRFKPLQGGATLAAF 493


>gi|254441946|ref|ZP_05055436.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198250619|gb|EDY74937.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 578

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 15/274 (5%)

Query: 531 IPLPNAQT-----MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           + + NA+T      ++F+ +++  V AE  L    +    ++++K  F+  +S+E+R+PL
Sbjct: 55  LAIQNAKTDEGTIFISFLRDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPL 114

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++G  +LL+ ++L   N  Q +YV Y+  S  +LL+ V+D+LD+   DAG +      
Sbjct: 115 NGLLGNMNLLRDTEL---NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEP 171

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSS 703
           + +++LL ++  + A+   +N   +     G K+   ++D  RL  +   ++ NA+ F+ 
Sbjct: 172 VNISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTR 231

Query: 704 KGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGL 758
           +G   +       GD    +  + + G  + ED+ K VF+ FV+   A+     G GLGL
Sbjct: 232 RGKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGL 291

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           SI + F+N  GG + + S     +T   R+P  E
Sbjct: 292 SIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHE 325


>gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 948

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|78357811|ref|YP_389260.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220216|gb|ABB39565.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 773

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 134/251 (53%), Gaps = 15/251 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLG 600
           FV      R  R L +   A+ +AD+ K+ F+ H+S+E+R+P+ +++G  + +L+T    
Sbjct: 361 FVKDITEHRRLRELEQTRTAMIEADKAKSDFLAHMSHEIRTPMNSVLGMAEQMLRT---- 416

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+++Q + ++ +  S   LL+L+NDILDL  V+ G + L  +   ++ ++  V+  ++ 
Sbjct: 417 PLSAEQKECMDVLKNSGESLLHLINDILDLTRVEGGQLALASAPFTVHAVVYGVRDMLSL 476

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----- 714
           +  + NI +   I+     + + D QRL QI   +L NA+ F+  G  V L  +R     
Sbjct: 477 QARQKNILLAATIAPDVRKNHMGDAQRLQQILVNLLGNAVKFTDNGE-VSLHVSRAPDAV 535

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +GD +F+V++ G  I       +F +F   S A   +  G GLGL+I    ++L GG +
Sbjct: 536 HDGDLLFTVRDTGIGITPAEQSRLFQKFSQASTAIHSRYGGSGLGLAISRHLVDLMGGTI 595

Query: 773 SISSSDEGVTT 783
            +  S+ GV T
Sbjct: 596 RL-ESEPGVGT 605


>gi|53712152|ref|YP_098144.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215017|dbj|BAD47610.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 929

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 172/365 (47%), Gaps = 50/365 (13%)

Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           K  GET D  LS  V V+    P+ R K+ +  +  +   EE        I    AT   
Sbjct: 595 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 650

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             NE + W     ++T F+ E     G +E++    + Y I  L   + ML         
Sbjct: 651 --NEWN-WVRMNVVVTKFEPE----HGEVEIIG---INYDITELKETEAMLI-------- 692

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                  E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y
Sbjct: 693 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 742

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +    +
Sbjct: 743 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQG---V 799

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ D      + ++DR RL Q+ S  ++NA+ F+S GS  +    ++ G   F V + G
Sbjct: 800 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 858

Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S +   +  
Sbjct: 859 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEERKGSRF 913

Query: 785 NCRIP 789
              IP
Sbjct: 914 WFTIP 918


>gi|254424116|ref|ZP_05037834.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191605|gb|EDX86569.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 534

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 135/287 (47%), Gaps = 41/287 (14%)

Query: 506 SFDDER---KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           SFD+E    K+ QG L ++  S+ +  +   P A   LT +N          +TE+    
Sbjct: 247 SFDNEELEYKTRQGDLRIVLASIKKIVLDGEPCA---LTIIN---------DITERKR-- 292

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
                ++N F+  VS+ELR+P+ ++ G  DLL T +LG L  +  Q +   + ++  L+ 
Sbjct: 293 -----LENEFISVVSHELRTPMHSLAGALDLLSTGELGVLTEQGQQILSVATTNAERLIR 347

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LVNDILDL  + +G M +N S   + +L+ +  +S+        ++++V S         
Sbjct: 348 LVNDILDLERLKSGKMSVNRSNCNIANLVTQAVESMQAMADNAQVQLQVQSMSV--PVTV 405

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---------------GDFIFSVKNNG 727
           D  R+LQ  + +LSNA+ FS  G TV+L    D                     ++ + G
Sbjct: 406 DCDRILQTLTNLLSNAIKFSPAGGTVLLTVELDKPTLEEPASSNTLQTVPQLHITLSDQG 465

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
             IP +  +++F RF        RR  G GLGL+I    +  HGG +
Sbjct: 466 RGIPFEQLETIFERFQQVDASDSRRKGGTGLGLAICRQILQQHGGRI 512


>gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 653

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 136/272 (50%), Gaps = 24/272 (8%)

Query: 541 TFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           T +N    +  ERA  L    E    A+  K++F+ ++S+ELR+PL  I+GF+ LL  S+
Sbjct: 152 TALNEAHKLADERAQKLVAAKEMAESANLAKSTFLANMSHELRTPLNAILGFSQLL--SR 209

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L +     +  I+ S   LL L+NDIL+++ ++AG + L+ +   L+  L  +    
Sbjct: 210 DSTLTAAHLHKLSIINNSGEHLLALLNDILEMSKIEAGQITLDPTNFNLHHFLEGLYNLF 269

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             K+    I +K      +  ++ AD ++L Q+   +L NA+ F+++G   +  A+R   
Sbjct: 270 QQKVFSKKINLKFQYSKTVPQYIQADIKKLRQVLINLLGNAIKFTNEGQVYLKVASRIYL 329

Query: 718 D-------------FIFSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQRRGVGLGLS 759
           D               FSV++ G  + E+  + +F+ F        +H+G   G GLGLS
Sbjct: 330 DDAYSVNLQEPTCLLTFSVEDTGPGVSEEDQEKIFHPFYQTEYGKQSHQG-VHGTGLGLS 388

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I   F+NL GG +SISS      T +  IP K
Sbjct: 389 ISRQFVNLMGGELSISSQLNKGATFSFSIPVK 420


>gi|71736179|ref|YP_274133.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556732|gb|AAZ35943.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 778

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516
           F   +  EE    P   +R  A    RY  ES     DG   +A++ IT+  D    L+G
Sbjct: 315 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 373

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             ++  D                     ++D   AE AL    E   +A   K+ F+  +
Sbjct: 374 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 412

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I+GF  LL      S    Q   + +I  +   LL L+N++LD+A ++AG
Sbjct: 413 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 468

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694
            + L+   + L+ +L E    ++    + NI +K +     KLG  VADRQRL+Q+   +
Sbjct: 469 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 527

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           LSNA+ ++     V ++  + +     SV + G  I  +    +F  F          G 
Sbjct: 528 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 587

Query: 755 GLGLSIVESFINLHGGHVSISSS 777
           GLGL++ +S + +  G +S+ ++
Sbjct: 588 GLGLALSKSMLEMMHGTLSVQNT 610


>gi|284035080|ref|YP_003385010.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283814373|gb|ADB36211.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 778

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 153/312 (49%), Gaps = 34/312 (10%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF--VNV 545
           S + NE    DL + + T     ++S+    E L D++     + +PN + M  F   N+
Sbjct: 52  SSFMNEKAYADLTSQLKTEIGQRKQSI----EKLIDAI---RTLDMPNEEGMTDFNPDNL 104

Query: 546 TDSV-----RAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDL 593
            + V     + ER    +NE LR+A E+       K+ F+  +S+E+R+PL  +IGFTDL
Sbjct: 105 IELVEFLKRQIERRKMIENE-LRQAKELAEQATLAKSDFLSTMSHEIRTPLNGVIGFTDL 163

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +K    +  Q  Y+  ++ S+T LL+++NDILD + ++AG ++L      L  +  +
Sbjct: 164 LLKTK---TDETQHHYLSLVNQSATSLLDIINDILDFSKIEAGKLELVIEQTDLLAIGRQ 220

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-- 710
           V   I    H+  + + +  D  +  FV AD+ RL QI   +LSNA+ F+ +G   +   
Sbjct: 221 VADMIKLPAHQKKLEMLLNIDPSIARFVWADQIRLRQILINLLSNAVKFTQQGEIELRIE 280

Query: 711 ----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
               + A       F+V++ G  I E   + +F  F        RR  G GLGL+I    
Sbjct: 281 RIHDQPADGLTSLRFAVRDTGIGIAERNQEKIFEAFSQEDSSTTRRFGGTGLGLAISNKL 340

Query: 765 INLHGGHVSISS 776
           + L G  + ++S
Sbjct: 341 LGLMGSRLQLTS 352


>gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|17433762|sp|Q56128|RCSC_SALTI RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 948

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|320324827|gb|EFW80899.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329193|gb|EFW85190.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 778

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 35/323 (10%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAI-ITSFDDERKSLQG 516
           F   +  EE    P   +R  A    RY  ES     DG   +A++ IT+  D    L+G
Sbjct: 315 FSVFYLPEECPQHPDMALRE-ATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRG 373

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             ++  D                     ++D   AE AL    E   +A   K+ F+  +
Sbjct: 374 FSKITRD---------------------ISDRRVAEIALGTAREEAERASRAKSEFLSRM 412

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I+GF  LL      S    Q   + +I  +   LL L+N++LD+A ++AG
Sbjct: 413 SHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLINEVLDIARIEAG 468

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKI 694
            + L+   + L+ +L E    ++    + NI +K +     KLG  VADRQRL+Q+   +
Sbjct: 469 HVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNL 527

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           LSNA+ ++     V ++  + +     SV + G  I  +    +F  F          G 
Sbjct: 528 LSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGT 587

Query: 755 GLGLSIVESFINLHGGHVSISSS 777
           GLGL++ +S + +  G +S+ ++
Sbjct: 588 GLGLALSKSMLEMMHGTLSVQNT 610


>gi|312888745|ref|ZP_07748309.1| response regulator receiver sensor hybrid histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298745|gb|EFQ75850.1| response regulator receiver sensor hybrid histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 539

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 140/262 (53%), Gaps = 12/262 (4%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I L N Q  +   N+ +  ++ + L+E  E  +K  E K  F+ ++S+E+R+PLT+II
Sbjct: 125 SLINLVNYQRQIKRQNI-ELEKSRQELSEAVEQTQKIREAKEIFLANMSHEIRTPLTSII 183

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LLK S    LN+ Q + ++ +  SS  LL LVNDIL+ A +DAG + +N +   + 
Sbjct: 184 GLNHLLKQS---PLNADQQELIKLMEYSSQSLLTLVNDILESAKIDAGKITINRAETNII 240

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
           +L+  +    +    E  + +    D  L S  +AD  RL QI   I++NA+ F+++G  
Sbjct: 241 NLVQTICNLSSPIAKEKGLALSCHFDTDLPSAILADSLRLNQILLNIINNAIKFTTEGGV 300

Query: 708 -VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            V LKA +   + +   F + + G  I +     +FNRF     +   +  G GLGLSIV
Sbjct: 301 EVTLKAIQKEPNRVLLQFIITDTGIGISQSGISKLFNRFEQAEVKTWEKFGGTGLGLSIV 360

Query: 762 ESFINLHGGHVSI-SSSDEGVT 782
           +    L GG +++ S+  +G T
Sbjct: 361 KRISELKGGELTVLSTPGQGTT 382


>gi|288940451|ref|YP_003442691.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895823|gb|ADC61659.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1037

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 128/257 (49%), Gaps = 16/257 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + ++T+  R E  L E+   LR+AD  K+ F+  +++ELR+PL  I     LLK S+   
Sbjct: 644 YYDITERKRNEAKLAEQARQLREADWRKDEFLAMLAHELRNPLAPISNALQLLKQSRFAG 703

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS---- 657
              +++  +  I   +  L  LV+D+LD++ +  G+++L    + + ++++   ++    
Sbjct: 704 ---QEAWCLAVIDRQAAHLQRLVDDLLDVSRITRGVIELRPEPLDVTEIIDRAVETSRAL 760

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I  + HE  IR        +G  V    RL Q+ S +L+NA  F+ +G  + +   R+  
Sbjct: 761 IEARRHELRIRTPTEPIRLMGDLV----RLTQVVSNLLANAAKFTDEGGCIAIDVEREAT 816

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774
             +  V++NG  I  +    +F+ F     RG  R   G+G+GLS+V+  + +HGG V  
Sbjct: 817 TVLIRVRDNGLGIEPERLPQLFDLFY-QVDRGIARTEGGLGIGLSLVKRLVEMHGGSVEA 875

Query: 775 SSSDEGV-TTINCRIPS 790
            S   G    +  R+P 
Sbjct: 876 LSPGLGQGAELRVRLPG 892


>gi|254440930|ref|ZP_05054423.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198251008|gb|EDY75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 817

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 15/274 (5%)

Query: 531 IPLPNAQT-----MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           + + NA+T      ++F+ +++  V AE  L    +    ++++K  F+  +S+E+R+PL
Sbjct: 294 LAIQNAKTDEGTIFISFLRDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPL 353

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++G  +LL+ ++L   N  Q +YV Y+  S  +LL+ V+D+LD+   DAG +      
Sbjct: 354 NGLLGNMNLLRDTEL---NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEP 410

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSS 703
           + +++LL ++  + A+   +N   +     G K+   ++D  RL  +   ++ NA+ F+ 
Sbjct: 411 VNISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTR 470

Query: 704 KGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGL 758
           +G   +       GD    +  + + G  + ED+ K VF+ FV+   A+     G GLGL
Sbjct: 471 RGKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGL 530

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           SI + F+N  GG + + S     +T   R+P  E
Sbjct: 531 SIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHE 564


>gi|121603008|ref|YP_980337.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120591977|gb|ABM35416.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 930

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 124/241 (51%), Gaps = 10/241 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASS 617
            E L +AD +K+ F+  +++ELR+PL  I     LL T   G+L+ +  S+  E IS  +
Sbjct: 547 QEGLLQADRLKDEFLAMLAHELRNPLAPIATAAHLLST---GTLDPEGLSRLSEVISRQA 603

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +  L++D+LD++ V  G + L+ + + +N ++ E  + +   +   +  + +    + 
Sbjct: 604 GHMTRLIDDLLDVSRVTWGQVTLDKNPLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQR 663

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR RL+Q+ + +L+NA+ ++  G  + L+   D+      V++NG  +  ++   
Sbjct: 664 NLVSGDRMRLVQVLANVLNNAVKYTPDGGRITLRVVEDDSHLTVCVRDNGIGMSRELLAI 723

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG----VTTINCRIPSK 791
            F  F        R   G+G+GL++V++ ++LHGG V + S   G    +T +  R+P  
Sbjct: 724 AFELFTQGERTSDRTQGGLGIGLALVQTLVHLHGGTVRLHSEGAGLGSELTMVLPRLPQD 783

Query: 792 E 792
           +
Sbjct: 784 D 784


>gi|240141277|ref|YP_002965757.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 698

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  V A R L E       A+  K+ F+  VS+ELR+PL  I+G  DLL  ++   L+
Sbjct: 156 DVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTR---LD 212

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YVE    S   LL LV+ ILD + ++AG + L      +  L+  V + +A +  
Sbjct: 213 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 272

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
           +  + I + I+D      V D  R+ QI   +  NA+ F+  G   +  A    G     
Sbjct: 273 DKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTGGVGVSLARSGEGQGEGL 332

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           + +V++ G  IPE+    +F  F          G GLGL+I    +    G +   S+  
Sbjct: 333 VLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTVG 392

Query: 780 GVTTINCRIP 789
             +T    +P
Sbjct: 393 RGSTFRVMLP 402


>gi|46202120|ref|ZP_00053728.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 512

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 27/319 (8%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY------Y 491
           E ++   +G  VF  D  + L N  F  +     + + PGT    + A   R+      Y
Sbjct: 17  EAVEEFGQGFTVFDRDLNLILCNNRFLEMLNFPASLVHPGT----VFADFMRFNALRGEY 72

Query: 492 NESDGWDLFAAIITSFDD------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              D  +L A  +           ER+   GT       V+E    PLP    + T+ ++
Sbjct: 73  GPGDVEELVAERVDRARGFAPHCFERERPDGT-------VIEVRGTPLPGGGFVTTYTDI 125

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  RAER L    +   +   IK +F+  +S+E+R+P+  ++G   LL  S    L  +
Sbjct: 126 TERKRAERMLIHAKDKAEETARIKANFLATMSHEIRTPMNGVLGMLHLLTGS---PLTPE 182

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  ++E   +S+  LL+++NDILD + ++AG MK+  +   L  L+ E+   +     + 
Sbjct: 183 QRDHLETAQSSARSLLSIINDILDFSKLEAGQMKMESTRFDLYRLMEEMGALLKGAAMDK 242

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +++ I+         D  RL QI + ++ NA+ F+ +G   +L  A  +    F V 
Sbjct: 243 GLDLRLHIAANVPRHHCGDSNRLRQILTNLMGNAVKFTERGGVEVLVEALPDSRLRFQVA 302

Query: 725 NNGSSIPEDMCKSVFNRFV 743
           ++G  I       +F+ FV
Sbjct: 303 DSGIGIDPAAASGLFSEFV 321


>gi|262171335|ref|ZP_06039013.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
 gi|261892411|gb|EEY38397.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
          Length = 1163

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   Q  LT  N +T+    E AL +      +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 600 PINRRQYYLTLFNDITELKETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGL 659

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     + S +SQ +   + +S   L + VNDILD + ++A  ++L+ +T  L D
Sbjct: 660 MEILASR----IKSNESQLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLAD 715

Query: 650 LLNEVKQSIATKMHENNIRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L  + +S         +   V    D +L   V D  RL QI + +LSNA+ F+ KGS 
Sbjct: 716 ELCPLLRSFEATADLQGLDFIVNWQPDARLLVQV-DALRLNQIITNLLSNALKFTEKGSI 774

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            I    +    F F V + G  + E    S+F  FV       RR  G GLG+SIV + +
Sbjct: 775 RIC-VEQSEQHFTFEVTDTGCGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLV 833

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            L GGH+ + S  +  TT+   +P
Sbjct: 834 ELMGGHIHVESEIDQGTTVRVSLP 857


>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1349

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 15/238 (6%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L    E    A   K  F+ ++S+E+R+P+  +IG T LL  ++L    ++Q  Y   + 
Sbjct: 770  LNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTEL---TTEQRDYAGTVR 826

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S   LL L+NDILD + V+AG + +  S   L   + EV + +A K+   N ++ ++  
Sbjct: 827  RSGESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIE--NRKLDLVLQ 884

Query: 675  GKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIF--SVKNNG 727
              +G+   FV D  R+ Q+ + ++ NA+ F+ +GS VI  +  ++D    +   ++ + G
Sbjct: 885  YPVGAPRHFVGDAGRIRQVVTNLVGNAIKFTGEGSIVIEVVCESQDEARAVMRVAIHDTG 944

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
              IP +   S+F +F        R+  G GLGL+I +  ++L GG +++SS   EG T
Sbjct: 945  PGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGSMAVSSRLGEGST 1002


>gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 700

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 117/250 (46%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  V A R L E       A+  K+ F+  VS+ELR+PL  I+G  DLL  ++   L+
Sbjct: 153 DVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTR---LD 209

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YVE    S   LL LV+ ILD + ++AG + L      +  L+  V + +A +  
Sbjct: 210 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 269

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGD-F 719
           +  + I + I+D      V D  R+ QI   +  NA+ F+  G   +   ++  + G+  
Sbjct: 270 DKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTGGVGVSLARSGEEQGEGL 329

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           + +V++ G  IPE+    +F  F          G GLGL+I    +    G +   S+  
Sbjct: 330 VLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTMG 389

Query: 780 GVTTINCRIP 789
             +T    +P
Sbjct: 390 RGSTFRVMLP 399


>gi|89070251|ref|ZP_01157575.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89044171|gb|EAR50329.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 455

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 132/250 (52%), Gaps = 11/250 (4%)

Query: 547 DSVRAERALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           DSV++ R+L EK    E  + A+  K+ F+  +++ELR+PL +I G   L+  + +G + 
Sbjct: 200 DSVQSRRSLREKERLLEETQAANLAKSEFISVINHELRTPLASIKGAVSLINGNAVGEVP 259

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KM 662
            +  + +     +   L+ LVND+LD+    AG M+ ++  I   DL + +   IAT + 
Sbjct: 260 ERFRRMLSLAERNCNHLIQLVNDLLDVEKFSAGKMEFHFKNI---DLKSFLTAEIATNQT 316

Query: 663 HENNIRIKV-ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             NN  + +  +    G  V  D +RL Q+ S +LSNA  FS   ST+++       + +
Sbjct: 317 FANNFGVTIEAAPMPEGVHVWGDEKRLGQVLSNLLSNAAKFSKPDSTIVVGLKATGTEAV 376

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV+++G  IP +    +F  F  V +++  +R G GLGLSIV+S ++ H G + + S  
Sbjct: 377 ISVQDSGRGIPREKQSRLFEPFYQVDSSNERERGGTGLGLSIVKSIVDAHQGRIRLVSEP 436

Query: 779 EGVTTINCRI 788
              TT   ++
Sbjct: 437 GRGTTFYIKL 446


>gi|325923655|ref|ZP_08185280.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325545854|gb|EGD17083.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 664

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 14/241 (5%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613
           T +NEA   A   K+ F+  +S+ELR+PLT I+G+++LL    L  +   Q  Y  +  I
Sbjct: 273 TARNEAESMA-RFKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPTYKGLSVI 327

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKV 671
           ++S+     L++D+LDL+++  G ++L   ++ L + ++E    Q +A +  +  + + V
Sbjct: 328 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVHEALTTQELAAEGKDQILEVHV 387

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                L   + D  RL Q+   +LSNA+ F+     + +   RD+G  + SV+++G  I 
Sbjct: 388 PDTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIERDDGHLLVSVRDSGDGIA 445

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
            +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T   R+
Sbjct: 446 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 505

Query: 789 P 789
           P
Sbjct: 506 P 506


>gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with
           RcsB, regulates colanic capsule biosynthesis [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 948

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|20139412|sp|P58662|RCSC_SALTY RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with
           RcsB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 948

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
 gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
          Length = 590

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 3/229 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+K ++++  FV +VS+EL++P+T+I GF++ L    +     +Q Q++  I   S  + 
Sbjct: 356 LKKLEQVRRDFVANVSHELKTPITSIKGFSETLLDGAMEDPQLRQ-QFLSIILTESQRME 414

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+ D+LDL+ V+    KL+  ++ LN LL EV   ++ +  E  I + + +  +     
Sbjct: 415 SLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAWID 474

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D QRL+Q+F  ++ NA+ ++  G TV +    +       V++ G  I  D    +F R
Sbjct: 475 GDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEEEEETITVHVQDTGIGIDSDEISRIFER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  V  A      G GLGL+IV+  +  H G + + S     TT + ++
Sbjct: 535 FYRVDKARSRNSGGTGLGLAIVKHLVEAHKGEIEVKSEVNKGTTFSVKL 583


>gi|291545358|emb|CBL18466.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 469

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L K  E +  F+ +VS++ RSPLT+I G+ + +    +      Q +Y++ I+  ST 
Sbjct: 237 DKLNKNGEYQRQFISNVSHDFRSPLTSIKGYVEAMLDGTIPP--EMQERYLKVIAFESTR 294

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L   +L L  +D     ++     +N+ +     +      E NIR++++  GK   
Sbjct: 295 LEKLTRSLLTLNELDVKKRMMHMRRFDINETIRTTAATFEGTCSERNIRLELLLAGKELF 354

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +++ Q+   +L NA+ FSS  S++ L+   ++G    SVK++GS IP++    ++
Sbjct: 355 VRADMEQIQQVLYNLLDNAVKFSSDNSSITLETTVNHGKVFVSVKDHGSGIPKESLSRIW 414

Query: 740 NRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSS 777
           +RF   +A RG+ R+G GLGL+IV+  IN H  ++++ S+
Sbjct: 415 DRFYKIDASRGKDRKGTGLGLAIVKEIINAHKQNINVIST 454


>gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter sakazakii ATCC BAA-894]
 gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894]
          Length = 973

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 464 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQ 523

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  +  SS++LL +++DILD + +++  +K+        ++++ +  +
Sbjct: 524 ELP---KGVDRLVTAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITAN 580

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S + D  RL Q+ S +LSNA+ F+  G  ++    +  
Sbjct: 581 YQPLVVRKQLGLYCFIEPDVPMSLLGDPMRLQQVISNLLSNAIKFTDIGCIILHVGTQ-- 638

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++ F V++ G  IP      +F+ F       QR  +G GLGL+I E  IN+  G +S
Sbjct: 639 GDYLCFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 698

Query: 774 ISSSDEGVTTINCRIP 789
           + +     +    RIP
Sbjct: 699 VDTEPGMGSQFTIRIP 714


>gi|294874815|ref|XP_002767112.1| Drug sensory protein A, putative [Perkinsus marinus ATCC 50983]
 gi|239868540|gb|EEQ99829.1| Drug sensory protein A, putative [Perkinsus marinus ATCC 50983]
          Length = 371

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 116/214 (54%), Gaps = 14/214 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+SF+  V++ELR+PL  +IG ++ L+ ++    N  + ++++ I+  +  LL LVN+I+
Sbjct: 147 KDSFMATVNHELRTPLNGVIGLSESLRMTEP---NPGRKKHLDIINNCAVRLLALVNEIM 203

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSI-------ATKMHENNIRIKVISDGKLGSFV 681
           D+A + A  M+LN+  + +N++  +V   +         K+ ++ + +  I D       
Sbjct: 204 DIAALKAKKMQLNFGMVNVNEICEQVCGEMMEAVDKRGRKIKKDKVDLDFIPDPACPEVE 263

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D++RL  + S +++NA  F+SKGS  ++   +  G  +  + + G  I +D  K +F  
Sbjct: 264 GDKERLHYVMSAMVNNACKFTSKGSVKVITKGKARG-VLIKIVDTGIGIADDNVKRIFTE 322

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           F       + R   G+GLGLS+    INLHGG +
Sbjct: 323 FEQEDDDHENRKFEGLGLGLSVSNEVINLHGGRL 356


>gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
 gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
          Length = 558

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|42519761|ref|NP_965691.1| two-component system histidine kinase [Lactobacillus johnsonii NCC
           533]
 gi|41584051|gb|AAS09657.1| two-component system histidine kinase [Lactobacillus johnsonii NCC
           533]
          Length = 385

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 133/234 (56%), Gaps = 8/234 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  LLK+S+   LN  Q++Y++     +  
Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQTKYIQIAYDKALQ 201

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +  L  D+ +  T+ +    KL  + + +N +L +V      +  + NI   VI+  +  
Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLTPLHVNSMLEQVAAGFELEAEKKNITFNVITRPRDL 261

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
              AD + ++++ + ++SNA+ +    + + L A + N +F+   V+NNG  IP+   + 
Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNEFVELRVENNGEQIPKKSLQK 321

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V ++   +  G GLGL+I +S ++LHGG++   S+ E +T+   ++P
Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGNIKCQSTAE-LTSFIIQLP 374


>gi|323484204|ref|ZP_08089573.1| histidine kinase [Clostridium symbiosum WAL-14163]
 gi|323402446|gb|EGA94775.1| histidine kinase [Clostridium symbiosum WAL-14163]
          Length = 466

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 136/247 (55%), Gaps = 11/247 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + +  R + E  E L +  +I+  F  + S+EL++P+T+I G+ +LL++    +LN + +
Sbjct: 221 TTKMSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGM--ALNEETT 278

Query: 608 Q-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +++ I   +  + +LV+DIL ++ +++   K    TI + DLL E   S+AT+  E  
Sbjct: 279 HDFLKRIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERG 338

Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
               V+   +  SF   AD +++ ++   ++ NA+ +++    + ++A R+N DF+ +V+
Sbjct: 339 ----VVIHKQFESFAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLAVR 394

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  IP++    +F RF  V      ++ G GLGL+IV+  +N + G V + S     +
Sbjct: 395 DSGVGIPQESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGS 454

Query: 783 TINCRIP 789
           T   R+P
Sbjct: 455 TFTVRLP 461


>gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 961

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|212212502|ref|YP_002303438.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212010912|gb|ACJ18293.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 683

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 138/253 (54%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+ L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+
Sbjct: 281 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLS 337

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   ++ IS +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H
Sbjct: 338 DEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAH 397

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           +  I++K      + S V  D +R+ Q+   +LSNA+ F+ KG   +    LK       
Sbjct: 398 KKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMT 457

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+VK+ G  + +    S+FNRF  +++ ++ +  GVGLGLSIV+  +   GG +S++ 
Sbjct: 458 LCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTI 517

Query: 777 SDEGVTTINCRIP 789
                +   C IP
Sbjct: 518 EPGVGSEFTCIIP 530


>gi|78060129|ref|YP_366704.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77964679|gb|ABB06060.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 781

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 8/234 (3%)

Query: 549 VRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +RA+R+L     A  +A   + +K+  +  VS+ELR+PL  I G+ ++L+ S   +L   
Sbjct: 384 LRAQRSLRGARVARDQAATSNRLKDELLATVSHELRTPLNVIYGWVEVLRNSGDSAL--- 440

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q Q ++ I  S+  L  +V DILD +++  G ++L+   + +  L ++   +  T     
Sbjct: 441 QQQAIDAIDRSARSLTRMVGDILDASSLATGKLQLDAMPVDVVRLFSDSVGAFQTAASSA 500

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I ++            D +RL Q+ S ++SNA+ F+  G +V +  ARD+   + +V +
Sbjct: 501 GIVLEFDCAASTCVVSGDAERLRQMLSNLVSNALKFTPAGGSVTVGLARDDVRVVLTVSD 560

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G  I       VF+ F    ++    RRG+GLGLSIV     LHGG V++ S+
Sbjct: 561 TGQGIVPAFLPYVFDMFRRADDSPASSRRGLGLGLSIVRHIAELHGGSVTVKSA 614


>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 992

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 14/230 (6%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  +   +A++ K +F+  +S+E+R+P+  +IG T LL  ++L   + +Q  +   I  S
Sbjct: 346 QAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQL---DPEQRHFATTIRDS 402

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL ++NDILD + ++AG + L  +   L  L+  +   +A + H   I I  + D  
Sbjct: 403 AESLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPD 462

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSS 729
           L ++V  D  RL QI   +  NA+ F+S G   I    RD       G   F V++ G  
Sbjct: 463 LPAWVRGDPGRLRQILMNLAGNAIKFTSHGGISI--EVRDETSPDGAGRLRFDVRDTGIG 520

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           IP+D    +F+ F+       RR  G GLGL+I +    + GG + + S+
Sbjct: 521 IPQDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVEST 570


>gi|301309034|ref|ZP_07214979.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300833060|gb|EFK63685.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 622

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 10/242 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L   +  Y+ 
Sbjct: 382 EEDLIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSEL---RQNYIS 438

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I  ++ +LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E   + + 
Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLD 498

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
              D     F  DR RL QI   +L+NA+  + KG              I F V + G  
Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTIEAEEKMIKFYVSDTGCG 555

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D   ++F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P
Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613

Query: 790 SK 791
            K
Sbjct: 614 MK 615


>gi|268320125|ref|YP_003293781.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|262398500|emb|CAX67514.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
          Length = 385

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 133/234 (56%), Gaps = 8/234 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  LLK+S+   LN  Q++Y++     +  
Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQTKYIQIAYDKALQ 201

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +  L  D+ +  T+ +    KL  + + +N +L +V      +  + NI   V++  +  
Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 261

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
              AD + ++++ + ++SNA+ +    + + L A + N +F+   V+NNG  IP+   + 
Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGRGATEINLIANKVNNEFVELRVENNGEQIPKKSLQK 321

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V ++   +  G GLGL+I +S ++LHGG++   S+ E +T+   ++P
Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGNIKCQSTSE-LTSFIIQLP 374


>gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 558

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 948

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 948

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|308067410|ref|YP_003869015.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305856689|gb|ADM68477.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 589

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E  E  ++ + ++  F  + S+EL++PL+ I GF + L+    G    KQ  Y+
Sbjct: 353 ANQQLVEDMEQKQRMEAVQQDFFANASHELKTPLSIIKGFAEGLQD---GVSAGKQDHYM 409

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I   +  +  LV D+LDLA +++G +KL  +T +L++L+ EV   +   + E  + + 
Sbjct: 410 KVIVEEADKMERLVKDMLDLAKLESGTLKLRKTTFILSELVEEVVDKLFHLLKEKKLEVV 469

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +I   ++    AD   + Q+      NA+  + +GS++ ++         FS++N G +I
Sbjct: 470 IIPANEM-PIHADVGWMEQVIINFFVNAIRHAEEGSSITIRIEGAGEISFFSIENKGETI 528

Query: 731 PEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           P+D  + +++RF     +   Q  G GLGLSIV+  ++LH     + ++ +GV
Sbjct: 529 PDDQLEQIWDRFYRAELSRSRQTGGTGLGLSIVKRILDLHEFRYKVENTKDGV 581


>gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 597

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 167/354 (47%), Gaps = 32/354 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV  F  DG I ++NP    F   W  E+     G     +A    +        +L
Sbjct: 266 MADGVITFNRDGEILITNPPAERFLQAWYFEQ-----GNDAEAMAPLPPQVK------EL 314

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           FA ++   +++ +S + TL+  +  +L   + PL   +TM     V  +V   R +TE+ 
Sbjct: 315 FARVVR--EEKEQSTEVTLQGRTWVIL---MTPL-YGKTM-----VRGAVAVLRDMTEE- 362

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ D+++  F+ +VS+ELR+P+  + G+++ +    + +   ++ +  + I   S  
Sbjct: 363 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAASEEEKKEMAKVIYDESLR 418

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVND+LDLA ++AG ++L Y  + L   +  V +       E  I +      +   
Sbjct: 419 MGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRDRDIE 478

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R+ Q+ + ++ NA+  +  G TV L            V+++GS IPE+    VF
Sbjct: 479 IAFDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDLPFVF 538

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF     A    R G GLGL+I ++ +  H G +++ S     TT +  +P++
Sbjct: 539 ERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592


>gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira
           platensis NIES-39]
          Length = 730

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E   A   A + K+ F+  +S+E+R+P++ ++G  +LL  + L     +Q  Y + I 
Sbjct: 50  LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHL---TPQQKDYTQTIY 106

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++N+ILDL+ ++AG   L      L D L  V   ++ K  +  + + ++ +
Sbjct: 107 RSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILLE 166

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
             +  ++  D  RL Q+   +++NA+ F+  G  +I    R    D  +  FS+++ G  
Sbjct: 167 PNIPRYLKGDGMRLQQVLINLVNNAIKFTQSGHIIIRLTPRFINQDQINIYFSIEDTGLG 226

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           I +++   +F  F   S+A   Q  G GLGLSI +  +NL GG + ++S +
Sbjct: 227 ISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVNSQE 277


>gi|237716271|ref|ZP_04546752.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262407876|ref|ZP_06084424.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229443918|gb|EEO49709.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262354684|gb|EEZ03776.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 885

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VT++    + W F  +++ ++  E +   L ++   TI++L  G+ V       K  N  
Sbjct: 344 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 396

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506
           FR +++  E            A     Y N+  G   +D +  I+               
Sbjct: 397 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTG 444

Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +  E K   G + +L    +      L +   +    ++T+    +R L    E  
Sbjct: 445 KGLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKA 504

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +D +K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL 
Sbjct: 505 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 561

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+ILDL+ +++G ++ ++    L++L  EV  +   +  +    +   SD  L     
Sbjct: 562 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESL-MIET 620

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+ Q+ S ++ NA+ F+ +GS        DN   +F V + G+ I  +    VF RF
Sbjct: 621 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLADN-QIVFHVTDTGTGIEPEKVGRVFERF 679

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  Q  G GLGLSI +S +   GG +S++S     TT    +P
Sbjct: 680 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724


>gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
 gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
          Length = 558

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 948

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 932

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 139/279 (49%), Gaps = 17/279 (6%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-VTDSVRAERALTEKNEALRK 564
           SFDDE         L+    +E +++     +   +F N +    +AE  +    +   K
Sbjct: 281 SFDDEE------FRLVPKGTVELNMLAENFNELYRSFHNELVRRKKAEETMKAARDEADK 334

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+P+ +IIG+  LLK S    L+ KQ +YVE I  ++  LL ++
Sbjct: 335 ANRAKSEFLASMSHEIRTPINSIIGYQYLLKNS---VLSPKQREYVENIGLAAKNLLAII 391

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           N ILD + ++AG M L      ++D+LNE+   +  +     I +++  D  +  F+  D
Sbjct: 392 NQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGD 451

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+   ++SN + F+ +G   I    ++   +N    FSV + G  I ++  K +F
Sbjct: 452 ITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLF 511

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F        R+  G GLGL+I +  + L  G +++ S
Sbjct: 512 QVFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVES 550


>gi|153872459|ref|ZP_02001345.1| histidine kinase [Beggiatoa sp. PS]
 gi|152071075|gb|EDN68655.1| histidine kinase [Beggiatoa sp. PS]
          Length = 823

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 22/234 (9%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            RA  A+ EK + L  A + K+ F+ ++S+ELR+PL +++  + LL  +K  +L  KQ +
Sbjct: 114 ARARAAIEEKAQELELASKYKSEFLANMSHELRTPLNSLLILSQLLADNKTNNLTDKQVE 173

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV  I +S + LL L+N+ILDL+ V+AG +++    + L DL+  VKQ       E  + 
Sbjct: 174 YVRTIHSSGSDLLTLINEILDLSKVEAGKIEIRSEDVSLTDLVATVKQKFQHLATEKGLA 233

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI--- 720
            +V I+         D QRL QI + +LSNA  F+++G   +      + ++  D +   
Sbjct: 234 FQVQIAQDVPTVLHTDEQRLKQIINNLLSNAFKFTTQGEVRLDIESFASHQEGKDVLPLG 293

Query: 721 ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
                        S+ + G  IP+D  + +F  F        RR  G GLGLSI
Sbjct: 294 EDLREGYQKFITISITDTGIGIPKDKQQIIFEAFQQADGSTSRRFGGTGLGLSI 347


>gi|315647993|ref|ZP_07901094.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315276639|gb|EFU39982.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 894

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 16/237 (6%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L K+ + K+ F+ ++S+ELR+PL +++  + +L  +K G+L  ++  Y   I  S + LL
Sbjct: 490 LEKSSKYKSQFLANMSHELRTPLNSMLILSQILSENKQGNLTEEEQHYASVIHNSGSELL 549

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           NL+NDILDL+ V+AG +++    + L +L   ++   +      N+  ++ +++      
Sbjct: 550 NLINDILDLSKVEAGKLQIEMDLVNLTELPEVMEGYFSKSAESKNLEFEIEMAEDLPDMM 609

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI-------FSVKNNGSS 729
            +D  RL QI   +LSNA+ F+  GS V L   + N     DFI       FSV++ G  
Sbjct: 610 YSDGMRLHQILRNLLSNAIKFTESGS-VKLSVKKMNSIVTSDFIISGEVIAFSVEDTGIG 668

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           I  +  + +F  F        RR  G GLGLSI      L GG++++  S+EG  +I
Sbjct: 669 IAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITV-ESEEGSGSI 724


>gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1287

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   RAE  L E  E    A ++K+ F+ ++S+E+R+PL  ++GFTDLL  +   +L+
Sbjct: 749 DITIRKRAELELLEAREHAEAASKLKSEFLANMSHEIRTPLNGVVGFTDLLMKT---NLD 805

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q QY+  +  S+  L++++NDILD + ++AG ++L      L ++   V   +  +  
Sbjct: 806 ETQQQYMSMVFQSANSLMDIINDILDFSKIEAGKLELTPEKTDLLEICGRVADMVTYQAQ 865

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNG 717
           + ++ + +     +  FV  D  RL QI   +LSNA+ F+ KG       ++ K +  + 
Sbjct: 866 QKHLEMLLNIPADIPRFVWCDSVRLRQILVNLLSNAVKFTIKGEIELKIELLNKVSGLDY 925

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            F FSV++ G  I     + +F  F        +R  G GLGL+I  S + L    + ++
Sbjct: 926 TFRFSVRDTGIGIDPQNQRRIFEAFSQEDSSTTKRFGGTGLGLTISNSLLGLMESRLQLT 985

Query: 776 SSDEGVTT 783
           S  E  +T
Sbjct: 986 SELEKGST 993


>gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 948

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 808

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 13/245 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-L 602
           ++ +  + E  L    EA   A   K+ F+ ++S+E+R+PL  +IG T +L    LG+ L
Sbjct: 396 DILERKKIEEDLRRSKEAAEAATNAKSEFLANMSHEIRTPLNAVIGLTGIL----LGTDL 451

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q  ++E I +S   LL ++NDILD + +D+G M+L      +   + +    +A   
Sbjct: 452 NREQRDHMEIIRSSGDALLAIINDILDFSKIDSGKMELEVQPFDVKKSIEDAVDLMAPVA 511

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
            E  + +   I +    + V+D  RL QI   IL NA+ F+S G   IL + RD G    
Sbjct: 512 QEKGLTLGYDIEESIPKTIVSDPTRLRQILVNILGNAVKFTSSGEVRILVSGRDLGGREH 571

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           +  F+V + G  IP +    +F  F        RR  G GLGL+I +  + L  G +  +
Sbjct: 572 EIHFAVMDTGIGIPAEKMNCLFQSFCQVEPCTTRRYGGAGLGLAISKRLVELMDGSIW-A 630

Query: 776 SSDEG 780
            S+EG
Sbjct: 631 ESEEG 635


>gi|323701175|ref|ZP_08112850.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533777|gb|EGB23641.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 459

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 122/247 (49%), Gaps = 8/247 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608
           R    L EK + + + D ++   V  VS+ELR+PLT I GF + L     G + SK+ + 
Sbjct: 216 RMSAQLKEKIDDIERLDRLRQELVSDVSHELRTPLTVIQGFAEALHD---GIVKSKEQEK 272

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  I   +  L +LVNDIL L +++ G M+     +VLN L+N   + +         
Sbjct: 273 FYLHNIMDEAGRLKDLVNDILKLRSMEVGHME-EMEFVVLNKLVNITVERMKQIASAKKT 331

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +K I+  +  +   +  RL Q+ + ++ NA+  S  G  V ++     G    +VK+NG
Sbjct: 332 IVKTITPPEAITVFGNIDRLKQVLTNLVDNAISHSYAGGMVAVELGLREGFAFIAVKDNG 391

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP++  ++++ RF        RRG   GLGLSIV   + +HGG V++ S      T  
Sbjct: 392 PGIPQEELENIWERFYKVDKSRSRRGTGSGLGLSIVRKIVEVHGGKVTVESELGKGATFT 451

Query: 786 CRIPSKE 792
             +P  E
Sbjct: 452 VFLPLSE 458


>gi|296444720|ref|ZP_06886683.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
 gi|296257668|gb|EFH04732.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
          Length = 1148

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D   A R    + E L +A   K+ F+ ++S+ELR+PL +I+   D L       L+++ 
Sbjct: 494 DLAAARRDAERQVEELAEASRYKSQFLANMSHELRTPLNSILILADTLADDD--ELDAEH 551

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++  + I  S   LL L+NDILDL+ ++AG ++L   ++ ++D L  + ++ A       
Sbjct: 552 TESAKVIGESGHHLLALINDILDLSKIEAGRLELVEESVRIDDALASIARTFAAPADRKG 611

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + + V  + G      AD +RL+Q+   ++ NA+ F+ +G   +  +  D G   FSV +
Sbjct: 612 VALTVETAPGAPSVIRADGRRLIQVLLNLVGNAVKFTDRGEVRVTASPMDGG-VRFSVSD 670

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  I  +  +SVF  F        RR  G GLGL+I    + L GG + + S
Sbjct: 671 TGVGIAPNQIESVFTAFQQVDGTTSRRYGGTGLGLTISRDLVTLMGGRIEVQS 723


>gi|240142356|ref|YP_002966866.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240012300|gb|ACS43525.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 1072

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 129/249 (51%), Gaps = 9/249 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  + +  +VT+  +AE AL        +A   K+ F+  +S+E+R+PL  I G+  LL 
Sbjct: 552 AGVVASMRDVTERKQAEIALVRAQAEAEQASAAKSDFLATMSHEIRTPLNGIAGYAGLLM 611

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T     L ++  ++VE I  +S +L  +V+D+LD + ++AG ++L  +T  L  L+++V 
Sbjct: 612 TED--GLPARSRRHVERIQTASQVLKTVVDDVLDFSKIEAGRVELVPTTFGLARLVDDVV 669

Query: 656 QSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VIL 710
             +   +  +   ++  I+    G++V D  RL QI   +L+NA+ F+  GS     V L
Sbjct: 670 AIVRGGVPADGPHVEGEIAPSLDGAYVGDENRLRQILLNLLNNAVKFTPAGSVDLRIVDL 729

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
                +    FSV++ G  I  +  K +F +F        RR  G GLGL+I +  + L 
Sbjct: 730 GLEAGSRRLRFSVRDTGIGISPEQQKLLFRKFSQIDASNVRRYGGTGLGLAISQRLVGLM 789

Query: 769 GGHVSISSS 777
           GG + +SSS
Sbjct: 790 GGAIEVSSS 798


>gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 558

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 948

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPNVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|146301663|ref|YP_001196254.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146156081|gb|ABQ06935.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 662

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 113/215 (52%), Gaps = 11/215 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+SF+ ++S+E+R+PL  IIGFTDLL  +K   LN+ Q  Y+  +  +   LL +VNDIL
Sbjct: 183 KDSFLANMSHEIRTPLNAIIGFTDLLAQTK---LNAVQRDYINSVQIAGENLLLIVNDIL 239

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           DL+ +++G + +      L + L  V   +  K+ +  +   +  D  +   V  D  RL
Sbjct: 240 DLSKMESGNLTIEAVPFNLKNTLKHVYNLLKIKVPK-EVEFNLFLDADMPEMVIGDEGRL 298

Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI   ++ NA+ F+ +G    S  +++    +    FSVK+ G  IP    K++F RF 
Sbjct: 299 NQILVNLIGNALKFTHEGEVTVSVKMIEETETHYSLKFSVKDTGIGIPPKKLKTIFERFT 358

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  R+  G GLGL+IV+  I L    +++ S
Sbjct: 359 QAEDSTTRKFGGTGLGLNIVKQLIELQNAEINVKS 393


>gi|325262479|ref|ZP_08129216.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
 gi|324032311|gb|EGB93589.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
          Length = 1294

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 134/251 (53%), Gaps = 14/251 (5%)

Query: 540  LTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            L   +VTD + AER    +L +  E   +A+  K+ F+  +S+++R+P+  I+G T  L 
Sbjct: 879  LVRADVTDMLAAERQTKRSLEKALELAEEANRAKSEFLSAMSHDIRTPMNAIMGMT-ALA 937

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             + +     K S  ++ IS SS  LL+L+ND+LD++ ++   + L    I+L+ L++++ 
Sbjct: 938  CAHIDD-QDKVSDCLKKISISSKHLLSLINDVLDMSKIERSQITLGRMKILLSRLMHDLA 996

Query: 656  QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----- 709
              I  +     I   V +D      F  D  RL QIF  ILSNA+ F+ +G TV      
Sbjct: 997  AIIEPQARAAGIHFYVRTDDICNEKFYGDVLRLNQIFINILSNAIKFTPEGGTVDFMVEE 1056

Query: 710  LKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            L A R  D+  + F++++ G  I  +  + +F  F  +++  +  G GLGLSI +  ++L
Sbjct: 1057 LPAVRCEDHVRYRFTIRDTGVGIKAEFLEHIFEPFTRSSNTSRVEGTGLGLSITKGLVDL 1116

Query: 768  HGGHVSISSSD 778
             GG +++ S +
Sbjct: 1117 MGGVITVESKE 1127


>gi|291484739|dbj|BAI85814.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 589

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 177/355 (49%), Gaps = 34/355 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWD 498
           +++GV     DG I ++NP    F   W  E+N  +  G ++              +  +
Sbjct: 262 MADGVITINIDGTILVTNPPAERFLQAWYYEQNMNIKEGDNL------------PPEAKE 309

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           LF   +++  ++ + ++ TL+  S  +L   + PL  A++     +V  +V   R +TE+
Sbjct: 310 LFQNAVST--EKEQMIEMTLQGRSWVLL---MSPL-YAES-----HVRGAVAVLRDMTEE 358

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
               R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S    + +  + I   S 
Sbjct: 359 ----RRLDKLREDFIANVSHELRTPISMLQGYSEAI-VDDIASSEEDRKEIAQIIYDESL 413

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  LVND+LDLA +++G   L+Y  I +N+ L ++ +  +    E NI ++        
Sbjct: 414 RMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALQNDISLTEE 473

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F+ D  ++ Q+F+ ++ NA+  +S G +V +            +K++GS IPE+    +
Sbjct: 474 EFMLDEDKMEQVFTNLIDNALRHTSSGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFI 533

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF     A    R G GLGL+IV++ +  H G +++ S  +  TT    IP+K
Sbjct: 534 FERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIPTK 588


>gi|237714586|ref|ZP_04545067.1| two-component sensor histidine kinase [Bacteroides sp. D1]
 gi|262406452|ref|ZP_06083001.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22]
 gi|294643706|ref|ZP_06721506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807338|ref|ZP_06766150.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229445355|gb|EEO51146.1| two-component sensor histidine kinase [Bacteroides sp. D1]
 gi|262355155|gb|EEZ04246.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22]
 gi|292640944|gb|EFF59162.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294445468|gb|EFG14123.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 660

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 129/232 (55%), Gaps = 13/232 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608
           +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+    +GS+  N +  +
Sbjct: 416 SEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNDELKE 471

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667
           Y + +  +S +LL L++D+LD++ +++G ++ NY    ++N   N +  +   K  + +I
Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTVDVDI 531

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725
           ++++  +  +     D  RL QI   +L+NA+ F+  G ++ L    D      +FSV +
Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 589

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + I  S
Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWIDKS 639


>gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
 gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
          Length = 1356

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 133/258 (51%), Gaps = 15/258 (5%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++TD  R E  L  + E   K+   K  F  ++S+E+R+P+  I+G  + L  S   +L
Sbjct: 835  LDITDQKRLEEELIRQREEAEKSKRAKEIFFANMSHEIRTPMNAIVGMGEQLAKS---AL 891

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            N +Q++Y++ I  S++ L+ ++ DILDL+ ++AG M +        +++    + +  K 
Sbjct: 892  NDQQNKYIKAIQDSASHLMVIIKDILDLSKLEAGKMTIEAIGFKPKNIIEHTFEMMKAKA 951

Query: 663  HENNIRIKVIS-DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
                +   +++ D ++    + D  R+ QI   +LSNA+ F+ KG  V+    +     +
Sbjct: 952  ESKGLDYSILNYDSRINEVLIGDPIRISQILLNLLSNAIKFTEKGKVVLQCHSISETESH 1011

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
             +  FSV + G  + +D   S F ++V       R+  G GLGLSI +  + L GG + I
Sbjct: 1012 QEIKFSVIDTGIGMDDDFVNSNFEKYVQEDTTITRKFGGTGLGLSISKELVQLMGGQMKI 1071

Query: 775  SSSDEGVTTI---NCRIP 789
             S  +G+ TI   N ++P
Sbjct: 1072 ESQ-KGLGTIVSVNFKLP 1088


>gi|163848362|ref|YP_001636406.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526284|ref|YP_002570755.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669651|gb|ABY36017.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450163|gb|ACM54429.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 957

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 117/236 (49%), Gaps = 9/236 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-------KTSKLGSLNSKQSQYVEYISA 615
           R+ +++KN FV  VS+ELR+PL +  G   LL       K+  +  ++S +   ++    
Sbjct: 469 REVEQMKNEFVSMVSHELRTPLASTQGALQLLLGDSERGKSGLIRDMSSVERDLLQRALT 528

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++  LL LVND+LD+A ++ G ++L    +   ++       +A+   +  + I +    
Sbjct: 529 NTNRLLRLVNDVLDIAKIERGQLQLQRHPVAPEEICRNAIDDLASFARQQQVTISLDVPP 588

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L     DR R++Q+   +LSNA+ FS  G  V++  A + G   FSV++ G  I     
Sbjct: 589 NLPLVDVDRDRIVQVLVNLLSNAIKFSPAGQQVVVSVAHEQGMVRFSVRDWGPGISRADQ 648

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F +F  +  +    R G GLGL+I    + LHGG + + S     +T +  +P
Sbjct: 649 LKLFQKFQQLDQSKSNVRGGSGLGLAISRQLVELHGGRIWVDSDVGFGSTFSFTVP 704


>gi|225027308|ref|ZP_03716500.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353]
 gi|224955370|gb|EEG36579.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353]
          Length = 943

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 15/244 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +A  KA   K +F+ H+S+++R+P+  I+GFT +   +   + + +    +E I 
Sbjct: 556 LAEHAQATNKA---KTAFLSHMSHDMRTPMNAIMGFTSI---AMKNNPSDEVKNCLEKID 609

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673
            SS  LL+L+ND+LDL  V++G +K N     L  + +         +   +I  K+   
Sbjct: 610 ESSEYLLSLINDVLDLTRVESGKVKYNPVPADLKSITDSALDITKGFLTNRDISFKIQRE 669

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD-FI---FSVKNNG 727
           + K+ + + D  RL  +   ILSNA+ F+  G T+  +A      GD +I   + + + G
Sbjct: 670 EAKIPNVLVDPVRLRDVLVNILSNAVKFTPDGGTITFEARCQEKGGDGYINMHYRISDTG 729

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + E+  K VF +F       R Q  GVGLG++IV+ ++++ GG +S+ S     TT  
Sbjct: 730 IGMSEEFTKEVFEKFAQEDSDVRTQYHGVGLGMAIVKKYVDMVGGTISVQSKKHEGTTFT 789

Query: 786 CRIP 789
             IP
Sbjct: 790 VDIP 793


>gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 948

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|218779450|ref|YP_002430768.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218760834|gb|ACL03300.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 1056

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 124/247 (50%), Gaps = 10/247 (4%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E  L    E    AD +K++F+  +S+ELR+PL +IIGF+ ++     G LN +Q + + 
Sbjct: 802  EAHLVTAKEKAESADRLKSAFLATMSHELRTPLNSIIGFSSIVLQELPGPLNKEQKKQMG 861

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             +  S+  LL L+ND+LD++ ++A  + L        + +N V QS+     +  + +++
Sbjct: 862  MVRNSARHLLALINDVLDISKIEADQLVLAPEEFDFTEAVNGVVQSVRPLAEKKGLELEL 921

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
              D        D++R+ Q+   +++NA+ F+ KGS  +L +   N +       +  +++
Sbjct: 922  KQDASKLRIFCDKRRMEQVLINLVNNAIKFTEKGSVSVLVSGPSNRNPHGVDMVMIQIQD 981

Query: 726  NGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             G  I P D  K +F  F  +      +  G GLGLSI +  + L GG +++ S     +
Sbjct: 982  TGIGIQPGDFSK-LFKPFRQIETGLDRKYEGTGLGLSICKKLVGLMGGEITVESEIGHGS 1040

Query: 783  TINCRIP 789
                R+P
Sbjct: 1041 RFTVRLP 1047


>gi|83859411|ref|ZP_00952932.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852858|gb|EAP90711.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
          Length = 624

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 6/210 (2%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+PL  ++G   LL    L  LN +Q ++V+ I +S   LL+++ DILD
Sbjct: 243 SQFLANMSHEIRTPLNGVLGIAQLLA---LTDLNDRQKEFVQTIRSSGRALLSIIEDILD 299

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLL 688
           L+ ++AG +KL    +  +D++ E  Q+ A       + +++    +L    + D  R+ 
Sbjct: 300 LSKIEAGKLKLVQRPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMVDANRVR 359

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           QI S +L NA+ F+  G   +     + G     V + G  + E + K VF RF     +
Sbjct: 360 QILSNLLGNAIKFTETGEVRVDALWTETGRIRVEVHDTGPGMSETVQKRVFGRFEQADMS 419

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           H     G GLGL+I    + L GG + + S
Sbjct: 420 HSRSHEGSGLGLAIARELVVLMGGQIGVHS 449


>gi|299146108|ref|ZP_07039176.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
 gi|298516599|gb|EFI40480.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
          Length = 660

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 129/229 (56%), Gaps = 13/229 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608
           +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+    +GS+  N++  +
Sbjct: 416 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 471

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667
           Y + +  +S +LL L++D+LD++ +++G ++ NY    ++N   N +  +   K  + +I
Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTMDVDI 531

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725
           ++++  +  +     D  RL QI   +L+NA+ F+  G ++ L    D      +FSV +
Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTD 589

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + I
Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 636


>gi|293572384|ref|ZP_06683366.1| sensor histidine kinase [Enterococcus faecium E980]
 gi|291607544|gb|EFF36884.1| sensor histidine kinase [Enterococcus faecium E980]
          Length = 402

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 134/238 (56%), Gaps = 16/238 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASST 618
           RK ++ K+  + +VS+++R+PLT+IIG+  L++    G  +S++      +  YI A   
Sbjct: 158 RKIEKSKDELITNVSHDIRTPLTSIIGYLGLIED---GQYHSEEDLLKYTHTAYIKAKQ- 213

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            + +LV+D+ +   V    + +N+S   +  L+ ++      +  + NI+I V S  K+ 
Sbjct: 214 -MKSLVDDLFEYTKVRQPAVPVNFSAFDMIQLIEQLAADFELEASKKNIQILVQS--KVD 270

Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           S +   D ++L+++F+ +L+NA+ +    + ++++  R   + + +VKNNG+ IP+    
Sbjct: 271 SLIMDGDTEKLVRVFNNLLTNALKYGKGATKIVIEVERVGSEVVATVKNNGAMIPQQAID 330

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           ++F+RF  V  +      G GLGL+I +S + LHGG++  + SD+  T+    +P K+
Sbjct: 331 NLFDRFYRVEESRSQATGGTGLGLAIAQSIVALHGGYI-YAKSDKQWTSFIMHLPIKK 387


>gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
 gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
          Length = 1128

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++NE L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ I 
Sbjct: 446 IQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIII 505

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLV+D+LD   +  G M +  S + L      V +  +  +    IRI     
Sbjct: 506 KSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVP 565

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L +  AD QRL Q+   ++ NA+ ++S+G  VI     D+   +  V + G  IP + 
Sbjct: 566 ADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDHVRV-QVVDTGQGIPAEQ 624

Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 625 LEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681


>gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
 gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
          Length = 558

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 948

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|46204504|ref|ZP_00049895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 349

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 109/219 (49%), Gaps = 4/219 (1%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVD 634
           +S+ELR+PL  I+GF++++K    G   +    +Y   I  S   LLNL+N+ILDL+ ++
Sbjct: 1   MSHELRTPLNAILGFSEVMKNEVFGVHTAPAYREYANDIHDSGMHLLNLINEILDLSRIE 60

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG   L    + L   + E +  +  +          + D  L    AD + L QI   +
Sbjct: 61  AGRYDLTEEAVQLAHTVEECRHMMTLRARSKGQTFTSLIDDSLPRLWADERALRQIVLNL 120

Query: 695 LSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           LSNA+ F+  G  + +K     +G    SVK++G  IPED   +V + F   S A +   
Sbjct: 121 LSNAVKFTPPGGEITIKVGWTSSGGQYVSVKDSGPGIPEDELGTVMSSFGRGSLAIKTAE 180

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +G GLGL IV+  ++LHGG   + S     T +    P+
Sbjct: 181 QGSGLGLPIVKGLVDLHGGGFQLKSKPREGTEVIVTFPA 219


>gi|301163195|emb|CBW22745.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis 638R]
          Length = 511

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  D +RA R     N+A +++D +K++F+ ++S+E+R+PL  I+GF++L+    +    
Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL E+ Q    ++ 
Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTEIYQKYENRIP 381

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722
           +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A  D+G+ I+  
Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V + G  IP D  K VF RF       Q  G GLGLS+ ++ +   GG +++ S
Sbjct: 441 VADTGCGIPSDQYKKVFERFYKIDSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492


>gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 513

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 4   AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 63

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 64  E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 120

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 121 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 178

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 179 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 238

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 239 VDSEPGMGSQFTLRIP 254


>gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208578|gb|EFZ93517.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 948

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|56475846|ref|YP_157435.1| complex regulator protein [Aromatoleum aromaticum EbN1]
 gi|56311889|emb|CAI06534.1| probable complex regulator protein containing response regulator
           receiver and signal transduction histidine kinase
           domains [Aromatoleum aromaticum EbN1]
          Length = 1205

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 10/231 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K + L +    K+ F+ ++S+ELR+PL +++  + LL  +K G+L+ KQ ++   I ++ 
Sbjct: 525 KAQELERVSAYKSQFLANMSHELRTPLNSLMILSSLLMQNKDGNLSEKQVEFASTIHSAG 584

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           T LL+L+NDILDL+ ++AG ++L+++ I + DL   ++    ++  +  I   V  +  +
Sbjct: 585 TDLLDLINDILDLSKIEAGRIELDFADIAVEDLSTSMRSLFQSQAEQKRIAFSVEVEADV 644

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN----GDFIFSVKNNGSS 729
             +F  D QR+ QI   ++SNA+ F+  G     V   +   N        F+V + G  
Sbjct: 645 PRTFHGDTQRVHQILKNLVSNALKFTEHGEVRLCVTFPSGSANPLPVPAIAFAVSDTGIG 704

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           IP D  + +F+ F        R+  G GLGLSI         G + +SSS+
Sbjct: 705 IPADKQQGIFDAFQQADGSISRKYGGTGLGLSISLELARRMHGDIRMSSSE 755


>gi|53713403|ref|YP_099395.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52216268|dbj|BAD48861.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 511

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  D +RA R     N+A +++D +K++F+ ++S+E+R+PL  I+GF++L+    +    
Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL E+ Q    ++ 
Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTEIYQKYENRIP 381

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722
           +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A  D+G+ I+  
Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V + G  IP D  K VF RF       Q  G GLGLS+ ++ +   GG +++ S
Sbjct: 441 VADTGCGIPSDQYKKVFERFYKINSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492


>gi|37523781|ref|NP_927158.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35214786|dbj|BAC92153.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 686

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 164/353 (46%), Gaps = 25/353 (7%)

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRL-SPGTHIRNIAA-TCSRYYNESDGWDLFAA 502
           EG+      GR+   NPA   +   E + L     H R     T    Y  SD   L+A+
Sbjct: 195 EGIVGLDLQGRVAFVNPAGARMLGCEVHELLGQPFHERLPGGWTAPPAYRMSD-IPLYAS 253

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTM---LTFVNVTDSVRAERALTEK 558
           +I +      S+       S   +EY   P L   QT+   +TF ++T+    ER     
Sbjct: 254 LIDASVHRVGSICFGRRDGSSFPVEYVSTPILEQGQTLGAVITFRDITERQAVER----- 308

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                    +K  FV  VS+ELR+PLT+I G   LL    LG L+ K  + ++   A++ 
Sbjct: 309 ---------LKAEFVSVVSHELRTPLTSIRGALGLLTGGLLGPLSEKGRRMLDIAIANTD 359

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L+ L+NDILD+  +++G + L      L +LL +    + +   +  + +  + + K  
Sbjct: 360 RLVRLINDILDVERMESGKVILVRRRCDLAELLTQSADLMQSMAQQGGVML--LCESKSA 417

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD  RL+Q F+ ++SNA+ FS  GSTV + AA D       V + G  IP +  +S+
Sbjct: 418 PLWADPDRLIQTFTNLISNAIKFSPAGSTVRVSAACDGPQVQVRVVDQGRGIPAEKLESI 477

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF  V  +   ++ G GLGL+I  S +  HGG +   S+    +T    +P
Sbjct: 478 FERFQQVDASDSRKKGGTGLGLAICRSIVLQHGGRLWAESAPGKGSTFVLTLP 530


>gi|323692079|ref|ZP_08106326.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503879|gb|EGB19694.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 466

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 136/247 (55%), Gaps = 11/247 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + +  R + E  E L +  +I+  F  + S+EL++P+T+I G+ +LL++    +LN + +
Sbjct: 221 TTKMSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGM--ALNEETT 278

Query: 608 Q-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +++ I   +  + +LV+DIL ++ +++   K    TI + DLL E   S+AT+  E  
Sbjct: 279 HDFLKRIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERG 338

Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
               V+   +  SF   AD +++ ++   ++ NA+ +++    + ++A R+N DF+ +V+
Sbjct: 339 ----VVIHKQFESFAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLTVR 394

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  IP++    +F RF  V      ++ G GLGL+IV+  +N + G V + S     +
Sbjct: 395 DSGVGIPQESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGS 454

Query: 783 TINCRIP 789
           T   R+P
Sbjct: 455 TFTVRLP 461


>gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 915

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 406 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 465

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 466 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 522

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 523 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 580

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 581 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 640

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 641 VDSEPGMGSQFTLRIP 656


>gi|260431941|ref|ZP_05785912.1| PAS domain containing protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415769|gb|EEX09028.1| PAS domain containing protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 502

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 136/290 (46%), Gaps = 15/290 (5%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           ++  D   + VW  + +G + W N +Y         + +KA G    L  + +   +   
Sbjct: 142 RLAMDKAPYPVWLLNHSGRVSWCNAAYIS-------LVRKARGPDTDL-TQPLFPELPDD 193

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI---TVNDQLTHTY-EI 311
           S   K         ++ N   + +  V    G    A+DV+  +   T   +   T  + 
Sbjct: 194 SRPGKKTRIAAPVKDNSNKLWFDLTHVELDEGLLHYAVDVNAIVEAETAQRKFVQTMTKT 253

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
              L++ +AIFD+NR L   N + ++L  +   FL+  PS     + LR  + +PE  N+
Sbjct: 254 FAQLSIGLAIFDRNRQLALFNPALIDLTTLPPDFLSCRPSISSFFDRLRDQHMMPEPKNY 313

Query: 372 KTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           ++W+  +  + +++E   +++TW LP+G    V    +P G   ++FE++T ++ L  ++
Sbjct: 314 RSWRNQMNDLLEAAEDGNYQETWSLPSGSVYSVSGRPHPDGAVAFLFEDITAEITLTRRF 373

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW-KTEENRLSPGT 478
              + +    +D L++ +AVF  DG +  +N A+R +W  ++E  + P T
Sbjct: 374 RAEMDLMQSILDKLADAIAVFADDGTLAFTNYAYRVMWGGSDEVGIEPST 423


>gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter turicensis z3032]
 gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032]
          Length = 703

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 194 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQ 253

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  +  SS++LL +++DILD + +++  +K+        +L++ +  +
Sbjct: 254 ELP---KGVDRLVTAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPRELMSHITAN 310

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  + + D  RL Q+ S +LSNA+ F+  G  ++    +  
Sbjct: 311 YQPLVVRKQLGLYCFIEPDVPMTLLGDPMRLQQVISNLLSNAIKFTDIGCIILHVGTQ-- 368

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++ F V++ G  IP      +F+ F       QR  +G GLGL+I E  IN+  G +S
Sbjct: 369 GDYLCFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIS 428

Query: 774 ISSSDEGVTTINCRIP 789
           + +     +    RIP
Sbjct: 429 VDTETGMGSQFTIRIP 444


>gi|77465233|ref|YP_354736.1| Cache sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides 2.4.1]
 gi|77389651|gb|ABA80835.1| Cache sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 699

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + L  A+  K+SF+  +S+ELR+PLT IIG+ +LL+ S+   L+ ++ Q V+ IS
Sbjct: 452 LATMGDKLDAANRAKSSFLSSMSHELRTPLTAIIGYAELLEASEGRKLDGERLQQVQAIS 511

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS- 673
            +   L+ LV+ +L+L+ ++   ++L  S++ L  L+ E             + +++I+ 
Sbjct: 512 TAGWTLVKLVDAVLELSRLEHRDLRLATSSMDLMPLIEEALGRARPDAERMRVTLRLIAP 571

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
           +  L S V+D   L +I  ++LSNA+ ++  G  V +    +  D +  S+++ G  IP 
Sbjct: 572 ETPLPSVVSDPALLRRILDQLLSNAVKYNLPGGLVEVSFGLEAPDTVDLSIRDTGPGIPT 631

Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D    VF  F    H  G   G G+G++I +    + G  +S+ S+    T    RIP
Sbjct: 632 DRQAEVFQAFQRLGHENGAISGAGIGMTIAQRLAEVSGCRLSLESTPGKGTVFLLRIP 689


>gi|126464695|ref|YP_001045808.1| multi-sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106506|gb|ABN79036.1| Cache sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 699

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + L  A+  K+SF+  +S+ELR+PLT IIG+ +LL+ S+   L+ ++ Q V+ IS
Sbjct: 452 LATMGDKLDAANRAKSSFLSSMSHELRTPLTAIIGYAELLEASEGRKLDGERLQQVQAIS 511

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS- 673
            +   L+ LV+ +L+L+ ++   ++L  S++ L  L+ E             + +++I+ 
Sbjct: 512 TAGWTLVKLVDAVLELSRLEHRDLRLATSSMDLMPLIEEALGRARPDAERMRVTLRLIAP 571

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
           +  L S V+D   L +I  ++LSNA+ ++  G  V +    +  D +  S+++ G  IP 
Sbjct: 572 ETPLPSVVSDPALLRRILDQLLSNAVKYNLPGGLVEVSFGLEAPDTVDLSIRDTGPGIPT 631

Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D    VF  F    H  G   G G+G++I +    + G  +S+ S+    T    RIP
Sbjct: 632 DRQAEVFQAFQRLGHENGAISGAGIGMTIAQRLAEVSGCRLSLESTPGKGTVFLLRIP 689


>gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
 gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
          Length = 558

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040580|gb|ACT57376.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 766

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 148/286 (51%), Gaps = 21/286 (7%)

Query: 509 DERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           + ++ L+ T+  LS S  +LE         +T L+  N    V  ERA T        A+
Sbjct: 496 ESKRRLKATINDLSTSRQILE-------RQKTELSIANAKYQVEKERAET--------AN 540

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVN 625
           + K+ F+  +S+ELR+PL  I+GF++++K    G L S K  +Y + I  S   LLN++N
Sbjct: 541 KTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMIN 600

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +IL+++ ++   + ++     L  ++NE  + I +     NI+I+     +L  F AD++
Sbjct: 601 NILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSEL-FFNADKR 659

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
            + +I   ILSN++ F++    ++++ ++     I ++ + G  IP+   + +   F  +
Sbjct: 660 IIKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPL 719

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            N +     G GLGL+I ++  NLHGG + I S +   T +   +P
Sbjct: 720 HNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765


>gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 915

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 406 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 465

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 466 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 522

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 523 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 580

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 581 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 640

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 641 VDSEPGMGSQFTLRIP 656


>gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
 gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
          Length = 1121

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 16/234 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           +E   A   A+E K++F+  +S+E+R+P+  +IG T+LL  +    LN +Q ++ E I  
Sbjct: 471 SEARTAAEAANEAKSTFLATMSHEIRTPMNGVIGMTNLLLDT---PLNEEQREFCETIRG 527

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   LL ++NDILD + ++AG M+L +    L + L      I T   +  + +    D 
Sbjct: 528 SGEALLTIINDILDFSKIEAGKMELEHQPFDLRECLESALDLIVTPAQQKGLELVYHVDK 587

Query: 676 KLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------FIFSVK 724
           ++ + +A D  RL QI   +L+NA+ F+ +G   +     D  D            FSV 
Sbjct: 588 QVPATIAGDVTRLRQILLNLLNNAVKFTEQGEISLTVRGEDGPDAAALPPGSMLLRFSVA 647

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++G  IP D    +F  F        R+  G GLGL+I +    + GG + + S
Sbjct: 648 DSGIGIPPDRLNRMFQSFSQIDASTTRKYGGTGLGLAISKRLSEMMGGRLWVES 701


>gi|310817666|ref|YP_003950024.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390738|gb|ADO68197.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1142

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+ELR+PLT ++G+T +L+T +  +  + Q + ++ I  ++  L  L+
Sbjct: 760 ANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRR--NDPAIQEKGLDVIERNARSLAQLI 817

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
            D+LD++ +  G + L+   + L  ++    + +  +  +  + + V+  G  G  V  D
Sbjct: 818 EDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTL-VMEAGVGGGMVTGD 876

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
             RL Q+F  +L NA+ F+  G  V ++  R N ++   +K++G  I  +    +F RF 
Sbjct: 877 PGRLQQVFWNLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALPHLFERFW 936

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
               +   +  G+GLGL+IV   + LHGG V   S+  G  +T   R+P
Sbjct: 937 QADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 985


>gi|170079099|ref|YP_001735737.1| two-component hybrid sensor kinase/response regulator [Synechococcus
            sp. PCC 7002]
 gi|169886768|gb|ACB00482.1| two-component hybrid sensor and regulator (His Kinase A domain
            protein) [Synechococcus sp. PCC 7002]
          Length = 1427

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 10/264 (3%)

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            P  Q +     +T   RA+R L +     R+ + +K  F+   S+E R+PLT I+G   +
Sbjct: 1161 PQYQVLGVASEITQQRRAKRELEKALTQERELNHLKTRFIDTASHEFRTPLTVILGAAQI 1220

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLND 649
            L         +++SQY+  I  S   L  L++D+L ++ ++AG +      +    +  D
Sbjct: 1221 LSAYHDHLPEARRSQYLNNIEDSVMRLRQLIDDLLTMSRLEAGKLGCQRQAVDIVTLCRD 1280

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ-IFSKILSNAMDFSSKGSTV 708
            L+ E+K  I  + H N     + + G + + +A    LLQ I + +L NA  +S+ G+TV
Sbjct: 1281 LIAELKIGIGKQHHFN-----LETTGAIAAPLALDPNLLQHILNNLLGNACKYSAPGTTV 1335

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
             ++          ++ + G  IP +    +F  F   ++     G GLGL+IV+ ++ LH
Sbjct: 1336 TVQLGSSAEALTLTIIDQGVGIPPEDQPHIFESFYRASNTQNIPGTGLGLNIVKEYVQLH 1395

Query: 769  GGHVSISSSDEGVTTINCRIPSKE 792
            GG + ++S     +     IP  E
Sbjct: 1396 GGQIELTSQLSKGSQFTVTIPLTE 1419


>gi|69247504|ref|ZP_00604374.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Enterococcus faecium DO]
 gi|257878631|ref|ZP_05658284.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257881296|ref|ZP_05660949.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|257890513|ref|ZP_05670166.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257893089|ref|ZP_05672742.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|258615287|ref|ZP_05713057.1| sensor histidine kinase [Enterococcus faecium DO]
 gi|260558211|ref|ZP_05830407.1| hypothetical protein EFXG_00002 [Enterococcus faecium C68]
 gi|261206901|ref|ZP_05921590.1| hypothetical protein EFZG_00422 [Enterococcus faecium TC 6]
 gi|289567405|ref|ZP_06447771.1| sensor histidine kinase [Enterococcus faecium D344SRF]
 gi|293557180|ref|ZP_06675731.1| sensor histidine kinase [Enterococcus faecium E1039]
 gi|293563864|ref|ZP_06678295.1| sensor histidine kinase [Enterococcus faecium E1162]
 gi|293569176|ref|ZP_06680482.1| sensor histidine kinase [Enterococcus faecium E1071]
 gi|294619787|ref|ZP_06699183.1| sensor histidine kinase [Enterococcus faecium E1679]
 gi|294623742|ref|ZP_06702570.1| sensor histidine kinase [Enterococcus faecium U0317]
 gi|314940147|ref|ZP_07847327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133a04]
 gi|314943021|ref|ZP_07849825.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133C]
 gi|314948139|ref|ZP_07851535.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0082]
 gi|314953447|ref|ZP_07856365.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133A]
 gi|314993813|ref|ZP_07859150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133B]
 gi|314998161|ref|ZP_07863043.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133a01]
 gi|68194829|gb|EAN09304.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Enterococcus faecium DO]
 gi|257812859|gb|EEV41617.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257816954|gb|EEV44282.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|257826873|gb|EEV53499.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257829468|gb|EEV56075.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|260075385|gb|EEW63691.1| hypothetical protein EFXG_00002 [Enterococcus faecium C68]
 gi|260078529|gb|EEW66231.1| hypothetical protein EFZG_00422 [Enterococcus faecium TC 6]
 gi|289160801|gb|EFD08735.1| sensor histidine kinase [Enterococcus faecium D344SRF]
 gi|291588145|gb|EFF19987.1| sensor histidine kinase [Enterococcus faecium E1071]
 gi|291593971|gb|EFF25449.1| sensor histidine kinase [Enterococcus faecium E1679]
 gi|291596696|gb|EFF27919.1| sensor histidine kinase [Enterococcus faecium U0317]
 gi|291600661|gb|EFF30962.1| sensor histidine kinase [Enterococcus faecium E1039]
 gi|291604175|gb|EFF33678.1| sensor histidine kinase [Enterococcus faecium E1162]
 gi|313587873|gb|EFR66718.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133a01]
 gi|313591736|gb|EFR70581.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133B]
 gi|313594550|gb|EFR73395.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133A]
 gi|313598221|gb|EFR77066.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133C]
 gi|313640652|gb|EFS05232.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133a04]
 gi|313645393|gb|EFS09973.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0082]
          Length = 402

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 134/238 (56%), Gaps = 16/238 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASST 618
           RK ++ K+  + +VS+++R+PLT+IIG+  L++    G  +S++      +  YI A   
Sbjct: 158 RKIEKSKDELITNVSHDIRTPLTSIIGYLGLIED---GQYHSEEDLLKYTHTAYIKAKQ- 213

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            + +LV+D+ +   V    + +N+S   +  L+ ++      +  + NI+I V S  K+ 
Sbjct: 214 -MKSLVDDLFEYTKVRQPAVPVNFSAFDMIQLIEQLAADFELEASKKNIQILVQS--KVD 270

Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           S +   D ++L+++F+ +L+NA+ +    + ++++  R   + + +VKNNG+ IP+    
Sbjct: 271 SLIMDGDTEKLVRVFNNLLTNALKYGKGATKIVIEVERIGSEVVATVKNNGAMIPQQAID 330

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           ++F+RF  V  +      G GLGL+I +S + LHGG++  + SD+  T+    +P K+
Sbjct: 331 NLFDRFYRVEESRSQATGGTGLGLAIAQSIVALHGGYI-YAKSDKQWTSFIMHLPIKK 387


>gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 545

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 13/229 (5%)

Query: 554 ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+ + NE  R+ADE    K  F+ ++S+E+R+P+  +IGFT++L+ +   +L+  Q  +V
Sbjct: 156 AIIKANELARRADEANQAKTQFLANMSHEIRTPMNGVIGFTEMLEET---NLDEAQRDFV 212

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+ND+LD + ++AG   LN        +++EV + I  ++ +  ++I 
Sbjct: 213 ATIKRSGESLLTLINDVLDFSKIEAGEFTLNEVDFSPELIVHEVSELIRPRIGKKPVKIS 272

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF---SVKN 725
            +  G + S V  D QR  QI   ++ NA  F+  G   I L    +  D +    S+++
Sbjct: 273 SVISGNMPSRVKGDEQRFRQILINLMGNAQRFTDSGEIEIQLSIDEETSDQVLVHTSIRD 332

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            G  I E   K++F  F  +     R+  G GLGLSI +   N+  G V
Sbjct: 333 TGIGIAERDLKTIFEPFRQSDGTSTRKYGGTGLGLSICKQLSNMMRGDV 381


>gi|183220472|ref|YP_001838468.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167778894|gb|ABZ97192.1| Putative two-component response regulator; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 807

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 13/246 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+   EK  AL +    K++F+  +S+E+R+P+  I+G T +   +   SL  +Q +Y+ 
Sbjct: 410 EKLKQEKELALAEV-RFKSAFLSTMSHEIRTPMNGILGMTQMFGQT---SLTDEQKEYLS 465

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL LVNDILDL  ++AG  +L   TIVL+  LN++ Q   +K++   + +++
Sbjct: 466 LIQFSGENLLLLVNDILDLTKLEAGKFELRLETIVLSKFLNDMVQLFRSKINTQYVNLEL 525

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKN 725
           +++  L    + D++R  QI S +L NA+ F+  G T+ L    D  D         +K+
Sbjct: 526 VTNTDLPKHIITDQRRFNQIISNLLGNAIKFTETG-TISLIVWSDPIDSKKCKLNLQIKD 584

Query: 726 NGSSIPEDMCKSVFNRFVS-NAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +    +F  F+  ++H  G+  G GLGL+I +  +    G +S+ S     + 
Sbjct: 585 TGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGLTITKKIVEEMSGKISVLSELGKGSV 644

Query: 784 INCRIP 789
            +  IP
Sbjct: 645 FHVEIP 650


>gi|60681652|ref|YP_211796.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis NCTC 9343]
 gi|60493086|emb|CAH07867.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis NCTC 9343]
          Length = 511

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  D +RA R     N+A +++D +K++F+ ++S+E+R+PL  I+GF++L+    +    
Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL E+ Q    ++ 
Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTEIYQKYENRIP 381

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722
           +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A  D+G+ I+  
Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V + G  IP D  K VF RF       Q  G GLGLS+ ++ +   GG +++ S
Sbjct: 441 VADTGCGIPSDQYKKVFERFYKINSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492


>gi|332705700|ref|ZP_08425776.1| putative ATPase [Lyngbya majuscula 3L]
 gi|332355492|gb|EGJ34956.1| putative ATPase [Lyngbya majuscula 3L]
          Length = 1754

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 132/265 (49%), Gaps = 9/265 (3%)

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + I L NA    T   V    R E+ + +  E  ++  E+K+ F+   S+E R+PLT I+
Sbjct: 1472 AAISLENATLYQTLHEVQVRERLEKQIRKSLEREKELTELKSRFISMTSHEFRTPLTTIM 1531

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL- 647
            G T++ K       + K+  Y++ I  +   +L++++D+L +   +AG +K N + + L 
Sbjct: 1532 GVTEIFKYYSQNWTDEKKQNYLDRIQVNVKHMLHMLDDVLVVNKANAGKLKFNPAPLNLL 1591

Query: 648  ---NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
                DL+ +++  I T   + +I   +  +    +F  D + L  I   +LSNA  +S  
Sbjct: 1592 EFCRDLVEDIELGIDT---QQSIVFSIQCECPEVNF--DEKLLRHILINLLSNATKYSPN 1646

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
             ST+         + IF +K+ G  IPE+  K +F  F    + G   G GLGL+IV+  
Sbjct: 1647 DSTINFDLICQQEEVIFKIKDQGIGIPEEDQKQLFESFHRCNNVGNIPGTGLGLAIVKQS 1706

Query: 765  INLHGGHVSISSSDEGVTTINCRIP 789
            + +HGG ++++S     TT    IP
Sbjct: 1707 VEVHGGEITVNSQVGIGTTFTVTIP 1731


>gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
 gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
          Length = 558

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 545

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 427

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 428 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|182413462|ref|YP_001818528.1| integral membrane sensor signal transduction histidine kinase
           [Opitutus terrae PB90-1]
 gi|177840676|gb|ACB74928.1| integral membrane sensor signal transduction histidine kinase
           [Opitutus terrae PB90-1]
          Length = 597

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 6/221 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            R  D+ K + V  VS+EL++PLT +     LL   ++G+L + Q + +E     +  LL
Sbjct: 367 FRLLDDAKTNLVGTVSHELKTPLTGLRMAVYLLLEQQIGTLTAPQRELLEGARDDADRLL 426

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGS 679
            +++++LDLA ++AG   L    I + +LL  +             R++V    + +   
Sbjct: 427 RILDNLLDLARLEAGATALQRREIGIGELLAAITAEARGLFTAAGQRLEVQCAPEVEATR 486

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
              D  RL  +F  +L+NA  FS +G+T+ L AA+ +  F+ F+V + G  IP D    V
Sbjct: 487 LHVDVDRLRHVFINLLANAAKFSPEGATIRLSAAKADPGFVRFAVHDEGPGIPADALTHV 546

Query: 739 FNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSD 778
           F+RF      GQ + G GLGL+I    +  HGG ++  S +
Sbjct: 547 FDRFYRAP--GQTKSGAGLGLAIAREIVVAHGGTIACRSEE 585


>gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1123

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 162/356 (45%), Gaps = 31/356 (8%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL----------SPGTHIRNIAATCSRY 490
           D +++G+ V    G I L+NPA  ++   EEN +          S   +     + C  +
Sbjct: 355 DTMADGLFVMDNHGLIVLANPAACAMLGYEENEMLGHQAHALFHSHAVNDHLPISECPVF 414

Query: 491 YNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
              S G         S  D R       ++ L+ D  L  S+    NA     F ++T  
Sbjct: 415 KAVSGGKPYAGEEYFSHKDGRVIAMDVASMPLVQDGQLTGSV----NA-----FRDITPR 465

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              E+AL     A  +A+  K+ F+  +S+E+R+P+  IIG T LL  +    L+S+Q+ 
Sbjct: 466 KETEQALIAAKHAAERANMAKSDFLATMSHEIRTPMNGIIGMTSLLLDTH---LSSEQNY 522

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  S+  LL ++NDILD + ++AG ++   +  +L  L+  V   +A +     I 
Sbjct: 523 YTNTIRVSAESLLTIINDILDFSKMEAGKLEFEETPFLLTPLVEGVVDILAPRAKAKGIG 582

Query: 669 IK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSV 723
           +   +       F++D  RL Q+   +  NA+ F+ KGS   TV L+   +   +  F++
Sbjct: 583 LTFAVPRDASRVFISDAGRLRQVLLNLAGNAVKFTEKGSVAITVTLEPKDETCVEACFAI 642

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            + G  IP++    +F+RF        R+  G GLGL I +  +   GG +   S+
Sbjct: 643 TDTGIGIPDEAKSRLFSRFTQADSSTARKFGGTGLGLVICQRIVEALGGAIGFDST 698


>gi|293373825|ref|ZP_06620169.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631224|gb|EFF49858.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 580

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 129/229 (56%), Gaps = 13/229 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608
           +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+    +GS+  N++  +
Sbjct: 336 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 391

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667
           Y + +  +S +LL L++D+LD++ +++G ++ NY    ++N   N +  +   K  + +I
Sbjct: 392 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTMDVDI 451

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725
           ++++  +  +     D  RL QI   +L+NA+ F+  G ++ L    D      +FSV +
Sbjct: 452 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 509

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + I
Sbjct: 510 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 556


>gi|265765483|ref|ZP_06093758.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254867|gb|EEZ26301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 919

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 169/354 (47%), Gaps = 50/354 (14%)

Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           K  GET D  LS  V V+    P+ R K+ +  +  +   EE        I    AT   
Sbjct: 585 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 640

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             NE + W     ++T F+ E     G +E++    + Y I  L   + ML         
Sbjct: 641 --NEWN-WVRMNVVVTKFEPE----HGEVEIIG---INYDITELKETEAMLI-------- 682

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                  E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y
Sbjct: 683 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 732

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +    +
Sbjct: 733 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQG---V 789

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ D      + ++DR RL Q+ S  ++NA+ F+S GS  +    ++ G   F V + G
Sbjct: 790 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 848

Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 849 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEE 897


>gi|227550621|ref|ZP_03980670.1| sensor histidine kinase [Enterococcus faecium TX1330]
 gi|257888113|ref|ZP_05667766.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257896268|ref|ZP_05675921.1| histidine kinase [Enterococcus faecium Com12]
 gi|257899255|ref|ZP_05678908.1| histidine kinase [Enterococcus faecium Com15]
 gi|293379349|ref|ZP_06625493.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecium PC4.1]
 gi|227180245|gb|EEI61217.1| sensor histidine kinase [Enterococcus faecium TX1330]
 gi|257824167|gb|EEV51099.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257832833|gb|EEV59254.1| histidine kinase [Enterococcus faecium Com12]
 gi|257837167|gb|EEV62241.1| histidine kinase [Enterococcus faecium Com15]
 gi|292641872|gb|EFF60038.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecium PC4.1]
          Length = 402

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 134/238 (56%), Gaps = 16/238 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASST 618
           RK ++ K+  + +VS+++R+PLT+IIG+  L++    G  +S++      +  YI A   
Sbjct: 158 RKIEKSKDELITNVSHDIRTPLTSIIGYLGLIED---GQYHSEEDLLKYTHTAYIKAKQ- 213

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            + +LV+D+ +   V    + +N+S   +  L+ ++      +  + NI+I V S  K+ 
Sbjct: 214 -MKSLVDDLFEYTKVRQPAVPVNFSAFDMIQLIEQLAADFELEASKKNIQILVQS--KVD 270

Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           S +   D ++L+++F+ +L+NA+ +    + ++++  R   + + +VKNNG+ IP+    
Sbjct: 271 SLIMDGDTEKLVRVFNNLLTNALKYGKGATKIVIEVERVGSEVVATVKNNGAMIPQQAID 330

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           ++F+RF  V  +      G GLGL+I +S + LHGG++  + SD+  T+    +P K+
Sbjct: 331 NLFDRFYRVEESRSQATGGTGLGLAIAQSIVALHGGYI-YAKSDKQWTSFIMHLPIKK 387


>gi|166030935|ref|ZP_02233764.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC
           27755]
 gi|166029202|gb|EDR47959.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC
           27755]
          Length = 995

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 155/298 (52%), Gaps = 33/298 (11%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNE-- 560
           +T   +ER++L  T + +    L   I+P    +T  L+ V V     A R +TE+ E  
Sbjct: 406 VTQRLEERETLSFTAQTVEGRWLTIIIVPQGYDKTGKLSTVLV-----ANRDVTEEKERE 460

Query: 561 ------------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                       A   A+  K +F+ ++S+++R+P+  IIGFT  L T+ +G+       
Sbjct: 461 IERDKNLRNALAAAEHANRAKTAFLNNMSHDIRTPMNAIIGFT-ALATTHIGN-TELVLD 518

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I  SS  LL+L+ND+LD++ +++G +++ Y+T+ L D+L++++  I   +H     
Sbjct: 519 YLKKIHTSSQHLLSLINDVLDMSRIESGSVRIEYTTVHLPDILHDLRTIIQGSVHSKQQD 578

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNG--DFIF 721
           + +   D      + D+ RL Q+   I SNA+ F+  G  + +    K  R +G    +F
Sbjct: 579 LYIDTQDVIHEDIITDKLRLTQVLLNICSNAVKFTPVGGMINIRVSEKPCRRDGYITVVF 638

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISS 776
           SVK+NG  +  +  K VF+ F S  H     G+   GLG++I ++ +++ GG + + S
Sbjct: 639 SVKDNGIGMSREFRKHVFDSF-SREHTVTENGIGGTGLGMAITKNIVDMMGGTIQVES 695


>gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
 gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
          Length = 1128

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++NE L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ I 
Sbjct: 446 IQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIII 505

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLV+D+LD   +  G M +  S + L      V +  +  +    IRI     
Sbjct: 506 KSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVP 565

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L +  AD QRL Q+   ++ NA+ ++S+G  VI     D+   +  V + G  IP + 
Sbjct: 566 ADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDHVRV-QVVDTGQGIPAEQ 624

Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 625 LEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681


>gi|94263692|ref|ZP_01287500.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455891|gb|EAT06050.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E    +  E    A   K+ F+ ++S+E+R+P+  IIG   L   S+     
Sbjct: 256 DITERKRQEALQRQAKETAEAASRSKSEFLANMSHEMRTPMNVIIGLGQLALKSEPPP-P 314

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K   Y+E I+AS+T LL L+ND LDLA ++ G M ++     L+D+LN++++ +  +  
Sbjct: 315 PKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQVPFDLSDILNKLEKLMGERAA 374

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGD 718
           E  ++ +  ++       V D  RL Q+   + SNA+ FS KG    S  +  +  D   
Sbjct: 375 EKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSEKGEVSLSFEMADSTADTFT 434

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V++ G  I  +  +++F  F        R+  G GLGLSI    + L GG + + S
Sbjct: 435 LRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGLGLSIANRLVELMGGKLEVKS 494


>gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
 gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
          Length = 1053

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 124/234 (52%), Gaps = 14/234 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVE 611
           R L +  E   +A   K+ F+ ++S+E+R+PL  I+G +DL L+T     LN +Q+Q++ 
Sbjct: 380 RDLRQAKEQAEEASRAKSEFLSNMSHEVRTPLNAILGLSDLCLQTP----LNPQQNQHLS 435

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++  LL ++NDILD + ++AG + +      L  LL E+   +  ++ E N+ + V
Sbjct: 436 KIRLAADHLLGIINDILDFSRIEAGKLSIEKLIFELPSLLEEISDLLIGRIEEKNLELCV 495

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKN 725
            I+     SFV D  RL Q+   +L NA+ FS +GS V L    D+ D       FSV +
Sbjct: 496 DIAAEASRSFVGDPLRLKQVIINLLGNAIKFSDQGS-VRLGCRIDSTDHNSTSLHFSVSD 554

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            G  I E+   ++F+ F        RR  G GLGL I +  + L GG + + S+
Sbjct: 555 EGIGISEEQQNALFSAFSQADTSTTRRFGGSGLGLVISKRLVELMGGRIWLEST 608


>gi|254243036|ref|ZP_04936358.1| hypothetical protein PA2G_03824 [Pseudomonas aeruginosa 2192]
 gi|126196414|gb|EAZ60477.1| hypothetical protein PA2G_03824 [Pseudomonas aeruginosa 2192]
          Length = 595

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 164/347 (47%), Gaps = 35/347 (10%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            +D + +G+ +F   GRI+ +NP A R L+ + +     G  I  I +       E+   
Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILSDVD--VQEA--- 314

Query: 498 DLFAAIITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVR 550
            +  A++    DE        +L+ D      +L +S+ P+  P   ++   + V D   
Sbjct: 315 -VEKALLGEVQDE-----AMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRD--- 365

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               +TE+    R  + +++ FV   S+ELR+P+T +     LL+        S+++  +
Sbjct: 366 ----VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLI 417

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +    + L+ L+ND+L+ +    G+ KL  ++  L DLL + +Q    K     + ++
Sbjct: 418 QTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQ 477

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +    +L     DR ++ ++   +L NA+  SS+G  + L+A R     + +V++NG  I
Sbjct: 478 LELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGI 537

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           P      +F  FV    +  + G GLGL++ +  I LHGG +++ S 
Sbjct: 538 PFSQQGRIFEPFVQVGRK--KGGAGLGLALCKEIIQLHGGRIAVRSQ 582


>gi|254293600|ref|YP_003059623.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254042131|gb|ACT58926.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 474

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 126/248 (50%), Gaps = 6/248 (2%)

Query: 550 RAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +A  +L+++ EA   L++    +  F    S+ELRS L  I+GF++++K    G L+ K 
Sbjct: 214 QAALSLSQEKEASFELKEKLAQRTLFFAKTSHELRSSLNAILGFSEVMKEGVFGELSDKY 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y + I      L   V+DILDL+ +DAG  K++   + L +L+ ++ + ++ +   ++
Sbjct: 274 KEYAQMIHEGGKSLQMTVDDILDLSKIDAGQYKISPVQVSLTELMWDMVKFMSDQARRSD 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKN 725
           I++ V S  +     AD + +  I   ++SNA+ F+  G  V +    D +G    SV++
Sbjct: 334 IKLSVSSLDRDVEAYADPRAVRHIAQNLVSNAIKFTPHGGAVAISVREDEDGGSWMSVRD 393

Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  +     + +   F+    +    + G GLGLS+V  F  LHGGH+ + S     + 
Sbjct: 394 TGPGMDPAEFEKILKPFIQTDESSTSGKHGTGLGLSVVNGFAQLHGGHIQLDSQAGEGSI 453

Query: 784 INCRIPSK 791
           I+   P K
Sbjct: 454 ISVYFPKK 461


>gi|170748787|ref|YP_001755047.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655309|gb|ACB24364.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 793

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 12/226 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDL 630
           F+ ++S+ELR+PL  IIGF D+++ + LG L + + ++Y   I  S + LL++++DILD+
Sbjct: 530 FLANMSHELRTPLNAIIGFADVMENAVLGPLGTPRYTEYCRDIRESGSHLLSMIDDILDM 589

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++A  ++L+   I     ++     +     E  I + V     L   +AD Q + QI
Sbjct: 590 ARLEARRVRLSPRAISAETAVSAALAPVEAAAREKAITVSVDVVPGL-ELLADPQAIGQI 648

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE-DMCK-----SVFNRFVS 744
            + ++ NA+ F+  G  V ++  R        +++NG  IP  D+ +     +   R ++
Sbjct: 649 LANLVQNAVKFTPAGGRVAVRGRRAGACTHLYIEDNGIGIPRTDLARLGRPFTQVERQMT 708

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             H+G     GLGL+I  S + LHGG + I S +   T +  R+P+
Sbjct: 709 RCHKGS----GLGLAITRSMVELHGGSLRIRSEETVGTIVLVRLPA 750


>gi|146284300|ref|YP_001174453.1| hypothetical protein PST_3988 [Pseudomonas stutzeri A1501]
 gi|145572505|gb|ABP81611.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 797

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 7/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LTE+    ++ +++KN FV  VS+ELR+PLT+I G   L+    LG       Q +E   
Sbjct: 429 LTER----KRIEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGKAPPSMQQMLEIAY 484

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++S  L +L+ND+LD+  + AG M        L +LL E   S      ++ +R  +   
Sbjct: 485 SNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHA 544

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +  +V D  RL Q+    LSNA  F+  G  + + ++        SV + G  IPE  
Sbjct: 545 TDVRVWV-DGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLRGQRVRISVTDQGPGIPEAF 603

Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF +F     +   Q+ G GLGL+I +  I   GG V         TT  C +P
Sbjct: 604 RSRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELP 660


>gi|115375839|ref|ZP_01463090.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820280|ref|YP_003952638.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367149|gb|EAU66133.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393352|gb|ADO70811.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1171

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 3/256 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L      D   A+  L +K   L +    K+ F+ ++S+ELR+PL + +    LL  
Sbjct: 454 QTQLLAKQKDDLTNAQGTLAQKASELERTSRYKSEFLANMSHELRTPLNSSLILAKLLAD 513

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +K G+L S+Q ++ + IS++   LL L+NDILDL+ ++AG +++    ++L   +  + +
Sbjct: 514 NKEGNLTSEQVKFAQTISSAGNDLLALINDILDLSRIEAGKVEVQPEVVILRRTVEALLR 573

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +      E  +   + + +        D QR  QI   +LSNA  F+ KG   +      
Sbjct: 574 TFQPVAQEKKLGFSISVQEDVAEKLETDPQRFGQILRNLLSNAFKFTEKGEVSLRVFPVG 633

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G   F+V++ G  I     + +F  F        R+  G GLGLSI      L GG V+
Sbjct: 634 PGKVGFAVRDTGIGIAPHQQELIFEAFRQADGSTHRKYGGSGLGLSISRDLARLLGGEVT 693

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +T    +P
Sbjct: 694 VQSQPGEGSTFTLTLP 709


>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
 gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
          Length = 715

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 20/243 (8%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +  + D  +A   L    EA + A   K +F+ ++S+E+R+P+  IIG T+L+  +    
Sbjct: 37  YERIQDLKKAGEELRHAKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDT---D 93

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L   Q +Y+  +  +   LL+L+NDILD + ++AG ++L      L + L +  +S+A +
Sbjct: 94  LTDTQREYLAMVREAGNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFR 153

Query: 662 MHENNIRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            H   I +       + D  LG    D  RL QI   ++ NA+ F+++G  V+L  A ++
Sbjct: 154 AHGKGIELACHVHPEVPDALLG----DASRLRQIVVNLVGNAIKFTTQGE-VVLDVAYES 208

Query: 717 -----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                 +  F+V + G  IP D  +S+F+ F        R+  G GLGL+I    + L G
Sbjct: 209 PTNNAANLHFTVTDTGIGIPTDKLESIFDSFEQADMSTTRQFGGTGLGLAISSRLVKLMG 268

Query: 770 GHV 772
           G +
Sbjct: 269 GRI 271


>gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1143

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 132/250 (52%), Gaps = 13/250 (5%)

Query: 537 QTMLTFVNVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           Q ML    +   V+ ++A  E     E    A   K+ F+ ++S+E+R+P++ I+G  D+
Sbjct: 599 QLMLLLEGLWAHVKRKQATLEILQAKEQAEAASRAKSEFLANMSHEIRTPISGILGMADV 658

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L T++L     +Q+QY+  +  S+  LL ++NDILDL+ ++A  +KL      L+  L  
Sbjct: 659 LLTTRL---EDRQAQYIALLKDSANALLIIINDILDLSKIEARKLKLEPELFNLDAALRA 715

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TV 708
           V      +  +  + ++V  D  L   +  D  RL QI + +LSNA+ F+S+G      V
Sbjct: 716 VVDPFVLQTVKKGLGLEVHLDPGLPPKLHGDPIRLGQILTNLLSNALKFTSRGGVTLRVV 775

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
            ++ +  + +  F V++ G  IP D    +F  F  + +++  Q  G GLGL+I ++F+ 
Sbjct: 776 PVQVSGVDCELRFEVQDTGLGIPSDKQDRLFRSFSQLDSSYAKQYCGTGLGLAISKNFVE 835

Query: 767 LHGGHVSISS 776
           + GG + + S
Sbjct: 836 MMGGRIWVES 845


>gi|300867581|ref|ZP_07112231.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334469|emb|CBN57401.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 532

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 19/263 (7%)

Query: 544 NVTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           ++T+  R E   R    K + LR   EIK+ F   +++E  +PL  ++  T++LK  +L 
Sbjct: 254 DITERNREEIEIRTALAKEKELR---EIKSRFFSMIAHEFANPLNTVLMSTEILKEHQLE 310

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +  +++ QY+ +I  +S  ++ L+ND+  +++ + G ++ N   I L    +++ + I  
Sbjct: 311 TTEAEKIQYLTHIKTASKHMIELLNDVRFISSAELGKIEFNPVPIDLTKFCSDLVEEIKI 370

Query: 661 KMHENNIRIKVIS----------DGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTV 708
               N+I I+ +           DG+    +   D + + QI S +L NA+ +S +GSTV
Sbjct: 371 AAGRNHI-IQFVPTQKSAQNPGEDGQQAEILPLLDAKMMRQILSNLLLNAIKYSPQGSTV 429

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
             +  +   + +F++K+ G  IP    + +F  F    + G+  G GLGL+IV+  +NLH
Sbjct: 430 YFEFEQSFLEAVFTIKDEGIGIPIADQEQLFESFYRAHNVGKISGTGLGLAIVKECVNLH 489

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +  SS     TT    IP K
Sbjct: 490 GGSIIFSSEVGAGTTFRVAIPLK 512


>gi|262196327|ref|YP_003267536.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079674|gb|ACY15643.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 1406

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 3/234 (1%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL + D  K +F  +VS+ELR+PLT ++G  +         L++   + +E +  + 
Sbjct: 338 RAEALAELDRAKTAFFSNVSHELRTPLTLMLGPLEEALARPAHGLDAALREDLEIVHRNG 397

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  LV  +LD + ++AG M+  +  + L     E+     + +    +R+++      
Sbjct: 398 LRLRKLVGTMLDFSRIEAGRMQARFEPMALASFTAELASVFRSAVEHAGLRLEIDCPPLS 457

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR++  +I   +LSNA+ F+ +G   +    R++     +V + G  IPED  + 
Sbjct: 458 APVYVDREQWEKIVLNLLSNALKFTLEGEIRVSLCEREDA-VELAVSDTGVGIPEDQIER 516

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           VF RF  V++A      G G+GLS+V   ++LHGG V ++S  +  +    R+P
Sbjct: 517 VFERFHRVADARGRSHEGTGIGLSLVRELVHLHGGTVRVTSELDRGSVFLVRLP 570



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 125/237 (52%), Gaps = 6/237 (2%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +  EALR+AD  K+ F+  +++ELR+PL  +    +LL  +  G+  ++Q++ ++ ++  
Sbjct: 1013 QAEEALREADRRKDEFLATLAHELRNPLAPLRTGLELLSVA--GADAAEQARTLDMMTRQ 1070

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
             + ++ LV+D+LD+  +  G ++L  + + L+ L+    ++  T      + + V     
Sbjct: 1071 VSHMVRLVDDLLDMNRIRRGKIQLKRARLELSPLVARAIEATRTVCGRAGVTL-VAPPAT 1129

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 AD  R+LQ+   +L NA  F+  G  V +   R+  D +  V+++G  I      
Sbjct: 1130 AIEVHADADRILQVVHNLLHNACKFTPSGGEVQVSVRREGRDAVVCVQDSGIGIDRAHLD 1189

Query: 737  SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPS 790
             +F  F  V   + G   G+G+GL++V+SF+ +HGG VS +S   G  ++   R+P+
Sbjct: 1190 GIFEMFAQVDAGNAGSGGGLGIGLTLVKSFVEMHGGSVSAASEGLGQGSVFTMRLPA 1246


>gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
 gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
          Length = 545

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 427

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 428 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 487

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 539


>gi|217076268|ref|YP_002333984.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
 gi|217036121|gb|ACJ74643.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
          Length = 424

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 43/356 (12%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++++ + + +   DG I  +N   R + +       PG   R +      YY       +
Sbjct: 82  LNNIVDPIIITKKDGTITFANNEARKITR-------PGIEERKVYEVFEDYYVNQ----M 130

Query: 500 FAAIITSFDDERKSL-QGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERAL 555
           F   I +     KSL  G + +  +   +Y    I+P+   Q    F+ V   V  ER L
Sbjct: 131 FDETINN-----KSLTSGEINIFVNGEKKYYEVKIVPVTLEQNNERFIIVLHDVTQERVL 185

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYI 613
                     + ++  F+ +VS+ELR+PLT+I G+ + L       L  K+   +++  I
Sbjct: 186 ----------ENVRKEFISNVSHELRTPLTSIHGYAEALLED---DLEDKELIRKFLSII 232

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + +  +  L+ND+LDL  +++G  +  +  I   ++L  V+  I     +  + ++ + 
Sbjct: 233 ESEAARMTRLINDLLDLEKLESGNTQFVFEKINFTEVLEHVRNIIEPLAKDYQVEVEFVY 292

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSS---KG-STVILKAARDNGDFIFSVKNNGSS 729
             +L   V D+ RL Q+   ++ NA+ ++S   KG   V ++A ++N      VK+ G  
Sbjct: 293 PDEL-YLVGDKDRLTQMTLNLVDNAIKYTSLKEKGKKKVTVEAWKENNSIKLVVKDTGVG 351

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           IPE   K +F RF  V  A   +  G GLGLSIV++ +  H G +  +S  EGV T
Sbjct: 352 IPEKAQKKLFERFYRVDKARSRKMGGTGLGLSIVKTIVEKHNGVIEFTSK-EGVGT 406


>gi|206890531|ref|YP_002249149.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742469|gb|ACI21526.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 890

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 127/248 (51%), Gaps = 10/248 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N+ L++ D +K++F+ ++S+ELR+P+  IIG+TDLL     G LN  Q   ++ ++
Sbjct: 287 LQKANKQLKELDTLKSAFIANMSHELRTPMNAIIGYTDLLLDEVDGPLNDDQKTSLKKVA 346

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A++  LL L+ND+LD++ +++G ++L+   I L +L++ +  +    + +  +   +  +
Sbjct: 347 ANARHLLQLINDVLDISKIESGKIELHPREIDLKELIDGIMVTFEPLIAKKGLSFTLNIE 406

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFI-FSVKNN 726
                   D  +  QI   ++SNA+ F+ +G   I     + G        FI  SV + 
Sbjct: 407 SGAEKLYVDEDKTKQILINLISNAVKFTHQGGITIKAKVSERGKAKDGSPQFIEISVSDT 466

Query: 727 GSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    +F++F     +   Q  G GLGLSIV   + LH G V   S     +T 
Sbjct: 467 GIGIKREDLDKIFDKFAQADVSTTRQYEGTGLGLSIVRGLVALHKGMVWAESEVGKGSTF 526

Query: 785 NCRIPSKE 792
              +P K+
Sbjct: 527 YVLLPFKK 534


>gi|157961260|ref|YP_001501294.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157846260|gb|ABV86759.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1186

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 11/259 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E ++IP+   Q ML    + D  R    E  L    E   +  E K+ F+  +S+E+RS
Sbjct: 451 IELTLIPVQLGQEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRS 510

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++G  +L+  S   +LN +Q  Y +    + T LL+ +NDILD + ++AG + L  
Sbjct: 511 PLNAVLGSVELILES---TLNKEQRIYADTAKEAGTALLSTINDILDFSKIEAGQIVLEE 567

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
           S      L  +V Q ++ K  +  I + +  +  +  S + D QRL Q+   ++ NA+ F
Sbjct: 568 SAFSPAKLATQVLQVLSPKAQDKGIALAIYVNRNVPESLIGDGQRLRQVLHNLVDNAIKF 627

Query: 702 SSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           S  G   I    A  D       + + G  I E+   ++F  F  V + H     G GLG
Sbjct: 628 SFGGCVAIEMWLADVDEARLCCKISDQGIGISEESQLTLFEEFSQVHDTHNTNYSGTGLG 687

Query: 758 LSIVESFINLHGGHVSISS 776
           L+I    I   GGH+ + S
Sbjct: 688 LAICAELIAQMGGHIGVDS 706


>gi|294646773|ref|ZP_06724396.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807695|ref|ZP_06766488.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292637933|gb|EFF56328.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445131|gb|EFG13805.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|295084434|emb|CBK65957.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 820

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 182/407 (44%), Gaps = 47/407 (11%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VT++    + W F  +++ ++  E +   L ++   TI++L  G+ V       K  N  
Sbjct: 279 VTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVV-------KEINND 331

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG---WDLFAAIITS------------- 506
           FR +++  E            A     Y N+  G   +D +  I+               
Sbjct: 332 FRYIYRNRE------------AYNRDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTG 379

Query: 507 ----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +  E K   G + +L    +      L +   +    ++T+    +R L    E  
Sbjct: 380 KGLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKA 439

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +D +K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL 
Sbjct: 440 EMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQ 496

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+ILDL+ +++G ++ ++    L++L  EV  +   +  +    +   SD  L     
Sbjct: 497 LINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESL-MIET 555

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+ Q+ S ++ NA+ F+ +GS        DN   +F V + G+ I  +    VF RF
Sbjct: 556 DKNRVFQVISNLIGNAVKFTKEGSISYGYKLADN-QIVFHVTDTGTGIEPEKVGRVFERF 614

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  Q  G GLGLSI +S +   GG +S++S     TT    +P
Sbjct: 615 AKLNNHAQ--GTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 659


>gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
 gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
          Length = 571

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 338 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRVS 453

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 454 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1143

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 143/283 (50%), Gaps = 22/283 (7%)

Query: 504 ITSFDDERK--SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           +  F  E++  S+  + +L +D  +EY +          +  ++T+  ++E AL +  E 
Sbjct: 714 LPHFSGEKRFLSILKSPKLRADGTVEYVVC---------SGEDITERWKSEEALKKAKEQ 764

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A  +K+ F+  +S+E+R+P+  I+G   LL+T+    LN+ Q+ +V+    S   L+
Sbjct: 765 AEEASRVKSGFLASMSHEIRTPINGIMGMLQLLQTA---DLNADQASFVDMAVRSCDRLV 821

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
            L++DI+D + ++AG + +  + + L  + + V++        N + +    D  L    
Sbjct: 822 RLLSDIMDFSRIEAGKLTIQSAPMSLESVFSHVRELFTPLSGSNGVVLDFTLDPALPDRI 881

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG-DFIFSVKNNGSSIPEDMC 735
           + D  RL QI + ++ NA  F++ G   +    L A         F V + G  IP++  
Sbjct: 882 LGDAFRLQQILNNLVDNACKFTTSGRITVQAWNLTAVEPRTVRVFFEVSDTGIGIPDEDL 941

Query: 736 KSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +F+ F+   + +    +GVGLGLSI +  + L GG +S++S
Sbjct: 942 RRLFDPFIQLCDGYVRSHKGVGLGLSICKRLVELMGGGMSVTS 984


>gi|206601622|gb|EDZ38105.1| Putative periplasmic sensor signal transduction histidine kinase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 506

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 3/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL E    L     +K+ FV   S+ELR+PLT+I GF  +L   KLG L  +Q   +  
Sbjct: 247 RALNEMARKLGDLSRMKSEFVTIASHELRTPLTSIRGFLSMLNRGKLGPLTPEQQNGLAI 306

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L+ LVN +LDL  +++G ++ +   + L  LLN ++        + NI  ++I
Sbjct: 307 VQEEVDHLVELVNGLLDLGRIESGQVRFDIQEVDLLALLNRIRSRQEAMAEQGNITFRLI 366

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D +L   +  D  ++ QI   +L NA  F+  G  V L+ +R +      V++ G  I 
Sbjct: 367 LDPELPPKIRTDPGKVAQILDNLLGNAFKFTPAGGEVELEVSRKDCQLEIEVRDTGIGIT 426

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F +F  V+  +   R G+GLGL+I    +    G + +  +    T     +P
Sbjct: 427 QESLPFLFEKFYQVAPFNNRTREGLGLGLAITRGIVLNMEGEIHVRPNTPRGTVFRVTLP 486


>gi|148378343|ref|YP_001252884.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|148287827|emb|CAL81893.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 617

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I     +L   K  + +  K+ QY
Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + I SVK+ G  
Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP D  +++F+RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 519 IPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567


>gi|115379186|ref|ZP_01466305.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
 gi|115363806|gb|EAU62922.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
          Length = 1021

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+  K+ F+  +S+ELR+PLT ++G+T +L+T +  +  + Q + ++ I  ++  L  L+
Sbjct: 779  ANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRR--NDPAIQEKGLDVIERNARSLAQLI 836

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
             D+LD++ +  G + L+   + L  ++    + +  +  +  + + V+  G  G  V  D
Sbjct: 837  EDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTL-VMEAGVGGGMVTGD 895

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
              RL Q+F  +L NA+ F+  G  V ++  R N ++   +K++G  I  +    +F RF 
Sbjct: 896  PGRLQQVFWNLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALPHLFERFW 955

Query: 743  -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
                +   +  G+GLGL+IV   + LHGG V   S+  G  +T   R+P
Sbjct: 956  QADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 1004


>gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 1070

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 9/254 (3%)

Query: 535 NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +A  ++T V  +V+  +    AL    E    A   K+ F+ ++S+E+R+PL  ++G T 
Sbjct: 653 DAPPIITGVHLDVSADIEQAAALELARERAESASYAKSQFLANMSHEIRTPLNGVLGMTQ 712

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++L     +QS++VE I +S   L +L++DILD++ +++G+++L      + +L+ 
Sbjct: 713 VLHMTEL---TEQQSRHVETIRSSGQALADLIDDILDISKIESGMIELEQRAFEMPELVA 769

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V      +  E  + + + ++       V D +RL QI   I+ NA+ F+  G   I  
Sbjct: 770 MVSDITRLRAQEKQLALDMSLAPDVAKVVVGDEKRLRQILINIVGNAVKFTDSGRVSIDI 829

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769
            A       F + + G  I  D   S+F+RF    N+   Q  G GLGL+I    + L G
Sbjct: 830 RAGAEDVVEFRISDTGPGIEPDHLASIFDRFAQADNSITRQYGGTGLGLAICHELVTLMG 889

Query: 770 GHVSISS-SDEGVT 782
           G + + S   EG T
Sbjct: 890 GEIGVESVPGEGST 903


>gi|332977344|gb|EGK14129.1| sensor histidine kinase ResE [Desmospora sp. 8437]
          Length = 600

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 7/260 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  M       D +R   A+       R+ D+++  FV +VS+ELR+PL+ + G+++ L 
Sbjct: 336 ALVMAPLYAGPDEIRGAVAVLRDVTEERRMDKLRKDFVANVSHELRTPLSMLQGYSEAL- 394

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              + +    Q +    I   S  +  LV ++LDLA ++AG ++L  ST+ + +L+  V 
Sbjct: 395 LDDIAASPEDQREITRVIHDESLRMGRLVRELLDLARMEAGHIRLEPSTVHVPELIRRVY 454

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       E  + ++V + DG +     D  ++ Q+ + +  NA+  + +G  V L+A  
Sbjct: 455 RKFQAIAREEKVALQVDLPDG-MDPVQWDEDKVEQVLTNLTDNAIRHTPEGGRVTLRALF 513

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGH 771
                   V++ GS IP++    VF RF        RGQ  G GLGL+IV+     H G 
Sbjct: 514 AEKGVQLIVEDTGSGIPQEDLPFVFERFYKADKARTRGQ-GGTGLGLAIVKHIAEAHAGS 572

Query: 772 VSISSSDEGVTTINCRIPSK 791
           VS+ S +   T    ++P K
Sbjct: 573 VSVKSKEGEGTRFTVQLPVK 592


>gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 929

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 126/236 (53%), Gaps = 10/236 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T    AE+ L    EA   A+  K+ F+ ++S+E+R+P+  IIG ++LL  S+L    
Sbjct: 251 DITRQKNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSELLLDSEL---Q 307

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YV  +  S+  LL+++N+ILD + ++AG ++L++  I L DL+ E  +S+A + H
Sbjct: 308 HQQDVYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVETLRSLAARAH 367

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
              + +    D  +   V  D  R+ QI   ++ NA+ F+  G  V+    L+ + D+ +
Sbjct: 368 RKGLELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTEAGEIVVQVKSLEMSTDSVE 427

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
             F V++ G  I +D  + +F+ F        R+  G GLGL+I     +  GG +
Sbjct: 428 LHFEVRDTGIGIQQDRLQKIFDAFEQADASTTRQFGGTGLGLAIASRLASAMGGMI 483


>gi|197106142|ref|YP_002131519.1| sensor histidine kinase (non-motile and phage-resistance protein )
           [Phenylobacterium zucineum HLK1]
 gi|196479562|gb|ACG79090.1| sensor histidine kinase (non-motile and phage-resistance protein )
           [Phenylobacterium zucineum HLK1]
          Length = 621

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 130/236 (55%), Gaps = 10/236 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623
           A + K+ F+ ++S+ELR+PL  I GF++++     G L +++   Y   I  S   LL L
Sbjct: 372 ASQAKSEFLANMSHELRTPLNAINGFSEIMVAEMYGPLGDARYRDYARDILNSGQHLLAL 431

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDILD++ ++AG M L +    L ++  +  + +  +     + + V+   +L    AD
Sbjct: 432 INDILDMSKIEAGKMSLRFDPCSLEEIAEDALRLVRNRAESAGLTL-VLDFVELPEVEAD 490

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFI-FSVKNNGSSI-PEDMCK-- 736
            + + Q+   +LSNA+ F+ +G  + L+A R +   G  +  SV++ G  I PED+ +  
Sbjct: 491 YRAVKQVLLNLLSNAIKFTPRGGRITLRAERRDDPLGQRVRVSVQDTGIGIAPEDLERLA 550

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             F + V + H   ++G GLGL++ ++F+ LHGG + + S+    TT +  +P ++
Sbjct: 551 RPFEQ-VESQHAKTQQGTGLGLALTKAFVELHGGLLDLKSAPGQGTTASFSLPVRQ 605


>gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
           DM4]
 gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens DM4]
          Length = 703

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 7/238 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  V A R L E       A+  K+ F+  VS+ELR+PL  I+G  DLL  ++   L+
Sbjct: 156 DVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTR---LD 212

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YVE    S   LL LV+ ILD + ++AG + L      +  L+  V + +A +  
Sbjct: 213 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 272

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
           +  + I + I+D      V D  R+ QI   +  NA+ F+  G   +  A    G     
Sbjct: 273 DKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARSGEGQGEGL 332

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + +V++ G  IPE+    +F  F          G GLGL+I    +    G +   S+
Sbjct: 333 VLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARST 390


>gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1152

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 5/250 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T + R    L EKN AL + D++K+ F+ + S+ELR+PL  IIG  + L     G L+  
Sbjct: 425 TTTERLSVELQEKNIALSRMDQLKDEFLANTSHELRTPLAGIIGIAESLLAGSGGQLSEL 484

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +  + +SS  L +L+NDILD   +    + LN   + +  + + V   +       
Sbjct: 485 ARHNLHMVVSSSRRLTSLINDILDFTRLRNRDLPLNLKAVDVKAVADVVLSLLTPLAEAK 544

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + +    D  L    AD  R+ QIF  ++ NA+ FS +G  +++   + NG    SV++
Sbjct: 545 QLTLVNQIDAALPCTHADEDRIQQIFYNLIGNAIKFSDQGE-IVVTGQQVNGWLELSVRD 603

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  K++F  F   A  G  R   G GLGL+I  + + LHGG +S+ S     +
Sbjct: 604 QGIGIDADSLKTIFEPF-EQADSGAGRASQGAGLGLAITRNLVQLHGGDLSVESQLGQGS 662

Query: 783 TINCRIPSKE 792
           T    +P  E
Sbjct: 663 TFCFTLPVSE 672


>gi|328480233|gb|EGF49153.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 396

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 122/234 (52%), Gaps = 4/234 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PL +IIG+  L++  +  S  ++  +Y       +  
Sbjct: 145 EEERRIEQSKDELITNVSHDIRTPLISIIGYLGLIEDHQYRS-EAELLKYTHTAYLKAKQ 203

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+ +   V +   KLN     +  +L ++  S   + H+ ++RI V  +     
Sbjct: 204 MKVLVEDLFEYTKVKSTTTKLNPVRFNMIAMLEQLAASFELEAHKKHMRILVSGEPNPLM 263

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD ++L ++F+ ++ NA+ +   G  + L A R   + +  V N+G+ IP D    +F
Sbjct: 264 MEADTEKLGRVFNNLIVNALKYGQGGRHIFLDAQRIGSEVVVKVSNDGAQIPNDALSQLF 323

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +RF  V  +   +  G GLGL+I +S I LHGG++   SS E +T+    +P K
Sbjct: 324 DRFYRVEESRSQETGGTGLGLAIAQSIIALHGGYIYADSSPE-LTSFVIHLPLK 376


>gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
 gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
          Length = 1522

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 13/252 (5%)

Query: 535 NAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           N + ML      ++T    AE  L    E   +A++ K++F+ ++S+ELR+P+  I+G  
Sbjct: 734 NGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSAFLANMSHELRTPMNAILGML 793

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+ +    L+ KQ+ Y      ++  LL L+NDILD + +++G M L      ++ +L
Sbjct: 794 TLLRRT---GLDRKQADYAAKSETATRTLLRLLNDILDFSKIESGKMALECIPFDIHVML 850

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-- 708
            ++   +++ +    + +    D  L  FV  D  RL QI + +  NA+ F+ +G  V  
Sbjct: 851 RDLAVILSSNLKATKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGNALKFTEQGEVVLF 910

Query: 709 --ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
             ++  +R      F V++ G  I  +  K++F+ F        RR  G GLGL I + F
Sbjct: 911 IKVIDRSRHQVRLQFGVRDTGIGIAPENQKTIFSGFTQAEASTTRRFGGTGLGLVISQRF 970

Query: 765 INLHGGHVSISS 776
           + L GG +++ S
Sbjct: 971 VALMGGELTLES 982


>gi|212691328|ref|ZP_03299456.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
 gi|212666081|gb|EEB26653.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
          Length = 781

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 141/270 (52%), Gaps = 19/270 (7%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++PL     ++  +  ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  
Sbjct: 380 TLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNA 439

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ L+    +    + +  Y + I+ +S ILL L+NDILDLA ++AG ++     + 
Sbjct: 440 IVGFSRLM---TMADNVADEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMD 496

Query: 647 LNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           L +L   V +     MH++ ++  V  I D K  S +   D+ R++Q+ + +++NA+ F+
Sbjct: 497 LGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFT 551

Query: 703 SKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
            KG        R   ++I F VK+ G  I E+  K +F RFV      Q  G GLGL+I 
Sbjct: 552 FKGEIRFGFEVR--KEYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAIC 607

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +   GG ++  S     +T    IP K
Sbjct: 608 RVIVEKIGGEITAESKLNEGSTFRFTIPYK 637


>gi|307153837|ref|YP_003889221.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984065|gb|ADN15946.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1053

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 8/227 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A++ K++F+ ++S+ELRSPL  I+GF+ L+  S  G L++   + VE I+
Sbjct: 585 LAQAKEKAEVANQTKSTFIANMSHELRSPLNAILGFSQLMAAS--GDLSAADQENVEIIN 642

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LLNL+N+IL +A ++AG   LN     L  LL E+ +    +     +++     
Sbjct: 643 RSGEYLLNLINNILTIAKIEAGKTTLNPKDFDLYHLLGEIDEMFDLEAATRGLKLNFEIP 702

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSSIP 731
             +  +V  D  +L Q+   +LSNA+ F+  G     +   A+     +F V++ G  I 
Sbjct: 703 ADVPRYVNTDEVKLRQVLINLLSNALKFTHVGKIGVYVQTEAKTPTTLLFRVQDTGVGIA 762

Query: 732 EDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776
           +     +F  F S    GQ  + G GLGL+I   F+ L GG  S+ S
Sbjct: 763 QSELDLLFKTF-SQTQSGQNSQDGTGLGLAISRQFVQLMGGDFSVES 808


>gi|119471909|ref|ZP_01614217.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Alteromonadales bacterium TW-7]
 gi|119445282|gb|EAW26572.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Alteromonadales bacterium TW-7]
          Length = 928

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 12/231 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYI 613
           LT   +  + A+ +K+ F+  +S+ELR+PL  ++GFT  L KT     LN  Q  Y++ I
Sbjct: 276 LTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTP----LNKHQKDYLDTI 331

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L+ +++DILD + ++AG M+L      L D +NEV   +A   HE  + + +  
Sbjct: 332 MLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHEKQLELSIYI 391

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           + ++      D  R  Q+   +LSNA+ F+ +GS  +  + R    ++   + SV + G 
Sbjct: 392 NPQVPDDLTGDPTRFKQVLINLLSNAIKFTEQGSIKVDISYRLLDEESASVLVSVTDTGV 451

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            IP D   S+F  F        R+  G GLGL I +  +    G +S++S+
Sbjct: 452 GIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMNGRISLNSA 502


>gi|53803483|ref|YP_114634.1| sensor histidine kinase KdpD [Methylococcus capsulatus str. Bath]
 gi|53757244|gb|AAU91535.1| sensor histidine kinase KdpD [Methylococcus capsulatus str. Bath]
          Length = 910

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 128/265 (48%), Gaps = 8/265 (3%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNII 588
           LP  Q +L TFVN+         L E+   N+   +++ ++NS +  +S++LR+PL  I+
Sbjct: 636 LPEQQKLLQTFVNLIVQAIERVRLAEQARINQVRMESERLRNSLLSSISHDLRTPLATIV 695

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G    L           + +    I   S  + +LVN+ILD+A  DAG++KL+    VL 
Sbjct: 696 GSASTLVEGDYALEPEDRRELCRAIYDESRRMASLVNNILDMAWFDAGVVKLHLQWHVLE 755

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
           +++  V   +  ++    + +++  D     FV  D   L Q+ + ++ NA+ ++ + S 
Sbjct: 756 EIVGTVLTRLKKQLERRPVTVRLPRD---APFVYVDSVMLEQVLANLMENAIRYTPENSP 812

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           + + A         +V ++G  IP+   + +F +F      G + GVGLGL+I  + +  
Sbjct: 813 IEIAAEATPFTMTITVSDHGPGIPKGQEELIFEKFYRVHREGPQSGVGLGLAICRAIVEA 872

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           HGG++   +   G       +P +E
Sbjct: 873 HGGYIRARNRAGGGAVFTIVLPLRE 897


>gi|225874369|ref|YP_002755828.1| two-component hybrid sensor and regulator [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791644|gb|ACO31734.1| two-component hybrid sensor and regulator [Acidobacterium
           capsulatum ATCC 51196]
          Length = 799

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 5/217 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D +K+ F+  VS+ELR+PLT++     L+    L     K  Q  +    +   L+ 
Sbjct: 560 QRLDRMKDEFISTVSHELRTPLTSLRAALGLIAGGALQRRPEKVQQMFDVAIGNCDRLVR 619

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LVNDILD   + +G M+L Y  +   DLL        +   + NI ++V  + +      
Sbjct: 620 LVNDILDFERLGSGKMQLQYVQMPARDLLQRAVDLQHSSAQKANITLRV--EAEPMDLWV 677

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+LQ    ++SNA+ FS  G+ V+++A+ R   + +  V+++G  IP +    +F R
Sbjct: 678 DADRILQTLGNLISNAIKFSPAGADVLVRASVRGKAEAVIEVRDHGRGIPPEKISLIFER 737

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F  V  +      G GLGL+I    +  HGG + + S
Sbjct: 738 FQQVDASDSRAMGGTGLGLAICRRIVRQHGGQIWVES 774


>gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 454

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 130/273 (47%), Gaps = 8/273 (2%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +++S+ P+P+    + F+     ++T   RAE AL    +    A+  K+ F+  +S+EL
Sbjct: 177 VDFSVKPVPDRDGNIQFLVPEGRDITQRKRAEAALVSAKQEAEAANRAKSQFLATMSHEL 236

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           R+PL  +IGF++ +     G  + ++  +Y+E I ++   L  L+ DILD++ ++AG  +
Sbjct: 237 RTPLNAVIGFSEAILAGAAGPASLERCVEYMELIHSAGQHLRALIEDILDVSRIEAGRTE 296

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L+       +L+    + +  K   + +   V+    L     D +R+ QI   +  NA+
Sbjct: 297 LDEEDCDPTELVRAAARLLEHKSVVSGVDFTVVIAPGLPRMRLDPRRIRQILLNLAGNAL 356

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G  V + A          V + G  I  +    ++  F        RR  G GLG
Sbjct: 357 KFTPTGGKVGICATLVPDGLALVVSDTGIGIAPEHHAKIWQAFYQADSSLSRRHQGSGLG 416

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+IV  F+  HGG VS+ S+    T I   +P+
Sbjct: 417 LAIVRHFVEAHGGTVSLDSAPGQGTRITVLLPT 449


>gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1207

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN+ L+  D++K+ F+ + S+ELR+PL  IIG  D ++    G ++  Q + +  I 
Sbjct: 443 LERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIADSIRDGATGPISELQKKNLSMIV 502

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLVNDILD + +    +KL  S++ + ++   V       +   ++++     
Sbjct: 503 GSGHRLANLVNDILDFSKLRHCSIKLQISSVGMREVTEIVLAFSRMILEGKDLQLINAIS 562

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPED 733
             L    AD  R+ QI   ++ NA+ F+  G   +     D N     +V + G  IPED
Sbjct: 563 SDLPPVEADENRIQQIMHNLVGNAIKFTDSGVVKVSAELIDVNKKMAITVSDTGIGIPED 622

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +++F  F       +R+  G GLGL I +  + LHGG +S+ S+
Sbjct: 623 KYEAIFKSFEQGDGSTERQYGGTGLGLPITKKLVELHGGTISVKST 668


>gi|298481097|ref|ZP_06999291.1| two-component sensor histidine kinase [Bacteroides sp. D22]
 gi|298272671|gb|EFI14238.1| two-component sensor histidine kinase [Bacteroides sp. D22]
          Length = 660

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 129/232 (55%), Gaps = 13/232 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608
           +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+    +GS+  N +  +
Sbjct: 416 SEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNDELKE 471

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667
           Y + +  +S +LL L++D+LD++ +++G ++ NY    ++N   N +  +   K  + +I
Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTVDVDI 531

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725
           ++++  +  +     D  RL QI   +L+NA+ F+  G ++ L    D      +FSV +
Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 589

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + I  S
Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWIDKS 639


>gi|89896828|ref|YP_520315.1| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51]
 gi|89336276|dbj|BAE85871.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 560

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 125/240 (52%), Gaps = 7/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L + +  K+ F+  +S+ELR+PLT+++ FTDLL    L     ++ Q ++YI 
Sbjct: 309 LEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLL-LQDLPKELKQERQNLKYIK 367

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A+S  LL L+N+ILDLA ++AG ++L    + + D++  +   IA    +  I  ++  D
Sbjct: 368 ANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGINWEISLD 427

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFIFSVKNNGSSIP 731
            ++    AD ++L ++   ++ NA+ F+     V ++   A RDN   +  V + G  IP
Sbjct: 428 PEVSLLRADPEKLRRVIENLVGNAIKFTPPEGRVEIQVKNAPRDNW-LMIRVIDTGIGIP 486

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + +F RF        R+  G GLGL++ +  + LH G + + S     +T    +P
Sbjct: 487 PEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVTLHKGELWVESELNKGSTFVVLLP 546


>gi|283853674|ref|ZP_06370906.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570945|gb|EFC18973.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1071

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 14/249 (5%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ERA  +     R+A+     K++F+ ++S+E+R+PL  ++G   LLKT+    L+ +Q +
Sbjct: 675 ERAARQATHLARRAEAANLAKSAFLANMSHEIRTPLNGLLGMMQLLKTT---VLDEEQLE 731

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y +    S   L  L+ DILDL+ ++A  M L+ +   L D+   + ++ A  + E  + 
Sbjct: 732 YADMAIRSGGRLTRLLGDILDLSRIEAERMALSLAPFRLADVFAAITETFAPLVREKGLP 791

Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD--FIFS 722
           +   +   + G  V D  R+ QI   +  NAM F+  GS  +     A+ D G    +F+
Sbjct: 792 LACRAAPDVPGVLVGDEMRVRQILFNLTGNAMKFTEAGSVAVEVSSLASPDPGQARLLFT 851

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP+D   +V   F    +++   ++G GLGL+I      L GG ++I S    
Sbjct: 852 VADTGVGIPDDKIDTVGEPFTQADSSYTRDQQGAGLGLTISRQLTELMGGTLTIESEPGQ 911

Query: 781 VTTINCRIP 789
            TT+   +P
Sbjct: 912 GTTVYLMLP 920



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 8/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +T   E  R+ D +K  F  +VS+ELR+PLT I+G    L        +      +  + 
Sbjct: 136 ITRLYEKTRELDALKTRFFANVSHELRTPLTLILG---PLARRLEACADDAARADLRVME 192

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++ +L   V+D+LD+A +DAG M+  Y+   +  L   +     +   E  IR  + + 
Sbjct: 193 RNALLLHRHVSDLLDVAKLDAGRMETRYARADVARLARFMGSCFESLAREKRIRFTIAAP 252

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
            +L + V D +++ +I   +LSNA  F+  G  V ++   D GD++  +V +NG  +P  
Sbjct: 253 ERLSAAV-DVEKVRRILQNLLSNAFKFTPDGGAVDVRLEED-GDWVAMTVADNGPGVPPA 310

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + ++VF RF        RR  G GLGL+I   F  LHGG + + +S  G  +    +P K
Sbjct: 311 LRQAVFERFRQLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGASFTVTLPRK 370


>gi|312958187|ref|ZP_07772710.1| alginate biosynthesis sensor protein [Pseudomonas fluorescens WH6]
 gi|311287618|gb|EFQ66176.1| alginate biosynthesis sensor protein [Pseudomonas fluorescens WH6]
          Length = 595

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 23/353 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +D + +G+ +    GR++  NP  +     +E RL  G       A      +E     
Sbjct: 263 VLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEERLGQGLG----EALVRPELDEQLQLV 318

Query: 499 LFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556
           L    +  + DD    ++G L LL+     YS+ P+ + Q  +L  V V   V  +RA  
Sbjct: 319 LRGGNLERAPDDLEVEVEGELRLLT-----YSLTPVSHTQGHILGAVMVLHDVTEQRAF- 372

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                    + +++ FV   S+ELR+P+T +     L +        S+++  ++ ++  
Sbjct: 373 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLFRERAKFPAESREADLLDTVNEE 423

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L+ L+ND+L+ +   +G+ KL      + DLL   +          NI + V +   
Sbjct: 424 MQRLMQLINDLLNFSRYQSGLQKLTLGPCDVPDLLEHAQARFVEPAKAQNIELLVEAQDD 483

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L    AD+ +L ++   +L NA+  ++ G  + L+A R     I SV++NG  I      
Sbjct: 484 LPRLYADQAQLERVLDNLLGNALRHTADGGQIRLQARRHGERVIISVEDNGEGIAYGQQG 543

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  FV    +  + G GLGL++ +  + LHGG + + S     T     +P
Sbjct: 544 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|258515402|ref|YP_003191624.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779107|gb|ACV63001.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 922

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 122/251 (48%), Gaps = 16/251 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L      K+ F+ ++S+ELR+PL +++    +L  +   +L  KQ +Y E I 
Sbjct: 498 LEEKASQLELNSRYKSEFLSNMSHELRTPLNSLLILAQMLAENDNSNLTHKQVEYAETIL 557

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL+L+NDILDL+  +AG M +    + L  +   +K+       +  I   + + 
Sbjct: 558 SSGRDLLSLINDILDLSKAEAGKMDVCPRVVKLKAIQEFLKRQYLPVAIQKGITFTIQLK 617

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAAR---------DNGDFI-- 720
           +G   +F+ D QRLLQI   +LSNA  F+ +GS +  I KA +         DN   +  
Sbjct: 618 NGLPETFITDEQRLLQILKNLLSNAFKFTEQGSVLLSIRKAEKRFTDKQILFDNASTMLS 677

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           FSV + G  IP D    +F  F        R+  G GLGLSI      L GG + + S +
Sbjct: 678 FSVSDTGVGIPRDKHIMIFEEFRQADGTTSRKYGGSGLGLSISNKIAMLLGGFIELESEE 737

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 738 GKGSTFTLYLP 748


>gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas
           arsenicoxydans]
 gi|133738580|emb|CAL61625.1| putative two-component sensor kinase (C part) [Herminiimonas
           arsenicoxydans]
          Length = 577

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q  L    +    R + AL    EA   A++ K  +V  +S+ELRSPL +I+G++ +L
Sbjct: 92  NRQNELLTQEIEAHQRTDVALQSAKEAAEFANQAKTRYVAGISHELRSPLNSILGYSQIL 151

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L +     ++ I  S   LL LV+++LDLA ++A  M+L  + I+L+  L ++
Sbjct: 152 LKNE--HLAAAPRTAIQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLEDL 209

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +  +     +++    +GK+  +V AD +RL QIF  +L+NA+ F+  GS V L   
Sbjct: 210 LSMVRPQAEAKGLKLLCTYNGKISRYVLADGKRLRQIFINLLTNAVRFTDDGS-VTLHVE 268

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGG 770
                  F V + G  I     + +F  F   A    RG+  G GLGL+I E  I L  G
Sbjct: 269 CSPASVRFDVVDTGIGIAVQDRQRIFQPFERGAAGRLRGE-PGAGLGLAITEKLILLMNG 327

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            +++ S     +T   R+P  E
Sbjct: 328 SLNLVSMQGQGSTFIVRLPLTE 349


>gi|37521385|ref|NP_924762.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212382|dbj|BAC89757.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 448

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 4/222 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A   A+  K+ F+  +S+ELR+PL  IIG+T +LK   + +   KQ + +E I  ++ + 
Sbjct: 202 AAEAANRAKDEFLALLSHELRTPLNPIIGWTQMLKRGSVAA--DKQVEVLEIIERNAKLQ 259

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+LD+A ++ G        ++L+ ++    +++ T   +  + ++V    +L   
Sbjct: 260 NQLIQDLLDVARIEQGKFSHRPQPVILSGVVQAAVEAVRTLAKDAGVALEVEVAERLPEV 319

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D  R+ Q+   +L+NA+ F+  G  V L            V ++G+ I       +F 
Sbjct: 320 MVDPTRMQQVVWNLLTNAIKFTPSGGWVQLHLVEAADCLCLVVSDSGTGISPAFIPHLFE 379

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           RF      G RR  G+GLGL IV   + LHGG V   S  +G
Sbjct: 380 RFRQAGDAGTRRQGGLGLGLFIVRYIVELHGGRVWAKSDGQG 421


>gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
 gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
          Length = 2782

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 88/360 (24%), Positives = 168/360 (46%), Gaps = 24/360 (6%)

Query: 443  LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
            ++EGV V     +I L NPA   +     +++     ++ +A+      +      ++  
Sbjct: 2425 MTEGVIVLDTRQQITLFNPAAEQVLDIPASQVL-NQPLQQLASIGDDETSRRRAQTIYNG 2483

Query: 503  IITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVRAERAL 555
            I+      R+S QG      D      V+  +I P+  P+ Q     V + D  R     
Sbjct: 2484 IVQGLRRMRES-QGIFSTSVDLTDPSQVIAVNIAPVRGPDGQHYGEVVVLRDITRE---- 2538

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                    +AD+ K  F+  VS+ELR+PLT I G+ D+L  +   +L   Q  Y+  I  
Sbjct: 2539 -------IEADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQINYLTIIKN 2591

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++  L  L+ DIL+ +  D+   KL ++ + +  +++EV QS+  +     + +++ +  
Sbjct: 2592 NTNRLRALIEDILEFSRPDSK-KKLTFTQVEIPAVIDEVVQSLRLEYERKGMTVRIDAPP 2650

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734
             L    AD++R+ QI   + SNA+ ++ +G ++ ++A  +  + +   V++ G  +  + 
Sbjct: 2651 TLPPVTADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQIEVEDTGVGMSPEQ 2710

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             K +F  F    N  R    G GLGLSI +  + +HGG + ++S     +T    IP ++
Sbjct: 2711 LKKLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFAFAIPLQQ 2770


>gi|297568711|ref|YP_003690055.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924626|gb|ADH85436.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 510

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 11/245 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYV 610
           R L +  E    A+  K+ F+ ++S+ELR+PL  IIG+++LL    S+ G    + S+ +
Sbjct: 253 RLLQQAKETAESANRAKSRFLANMSHELRTPLNAIIGYSELLLEDASEWGEW--EISEDL 310

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I ++   LL L++DILD++ ++AG + L+   +    LLN+V  +I   + +NN R++
Sbjct: 311 EKIKSAGQHLLMLISDILDISKIEAGRLDLHLEEVQWEPLLNDVVNTIRPLVVKNNNRLQ 370

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNN 726
           V +  +  +   D  +L Q+   +LSNA  F++ G  ++LKA+    R      F+V ++
Sbjct: 371 VDTPPEEITLFTDATKLRQVLYNLLSNATKFTTDGE-IMLKASLCRLRRQPRLEFAVSDS 429

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  + E+    +F  F        R+  G GLGL I   F  + GG +  +S      T 
Sbjct: 430 GIGMSEEQLAKIFQPFTQADSSTTRKYGGTGLGLVISRYFCRMMGGDIKATSRPGAGATF 489

Query: 785 NCRIP 789
              +P
Sbjct: 490 TVSLP 494


>gi|189910583|ref|YP_001962138.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775259|gb|ABZ93560.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 812

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 136/271 (50%), Gaps = 12/271 (4%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +Y  +    +Q +     +  + + +  L ++ E        K++F+  +S+E+R+P+  
Sbjct: 389 QYGFLVFGLSQALFIADRMIQNFKNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNG 448

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G T +   +   SL  +Q +Y+  I  S   LL LVNDILDL  ++AG  +L   TIV
Sbjct: 449 ILGMTQMFGQT---SLTDEQKEYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIV 505

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L+  LN++ Q   +K++   + ++++++  L    + D++R  QI S +L NA+ F+  G
Sbjct: 506 LSKFLNDMVQLFRSKINTQYVNLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTETG 565

Query: 706 STVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAH-RGQRRGVGLGL 758
            T+ L    D  D         +K+ G  IP +    +F  F+  ++H  G+  G GLGL
Sbjct: 566 -TISLIVWSDPIDSKKCKLNLQIKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGL 624

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I +  +    G +S+ S     +  +  IP
Sbjct: 625 TITKKIVEEMSGKISVLSELGKGSVFHVEIP 655


>gi|15600677|ref|NP_254171.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|107104586|ref|ZP_01368504.1| hypothetical protein PaerPA_01005665 [Pseudomonas aeruginosa PACS2]
 gi|218894587|ref|YP_002443457.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|9951818|gb|AAG08869.1|AE004961_4 probable two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|218774816|emb|CAW30634.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 595

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 164/347 (47%), Gaps = 35/347 (10%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            +D + +G+ +F   GRI+ +NP A R L+ + +     G  I  I +       E+   
Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILSDVD--VQEA--- 314

Query: 498 DLFAAIITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVR 550
            +  A++    DE        +L+ D      +L +S+ P+  P   ++   + V D   
Sbjct: 315 -VEKALLGEVQDE-----AMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRD--- 365

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               +TE+    R  + +++ FV   S+ELR+P+T +     LL+        S+++  +
Sbjct: 366 ----VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLI 417

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +    + L+ L+ND+L+ +    G+ KL  ++  L DLL + +Q    K     + ++
Sbjct: 418 QTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQ 477

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +    +L     DR ++ ++   +L NA+  SS+G  + L+A R     + +V++NG  I
Sbjct: 478 LELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGI 537

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           P      +F  FV    +  + G GLGL++ +  I LHGG +++ S 
Sbjct: 538 PFSQQGRIFEPFVQVGRK--KGGAGLGLALCKEIIQLHGGRIAVRSQ 582


>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 885

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 136/276 (49%), Gaps = 15/276 (5%)

Query: 526 LEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L+ S +P+ + Q ++        +++D  R E  L    +  + A+  K  F+  +S+E+
Sbjct: 191 LQMSTVPVRSGQGLVVGSVSVARDISDLKRTESELMTAMKEAQAANRAKGEFLAAMSHEI 250

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  +IG ++L + ++L   +++Q  Y++ +      LL+LVND+LD + ++AG + L
Sbjct: 251 RTPINGVIGASELCQETEL---DAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLNL 307

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
                    +L EV +  A  + +  I + +  D ++  +V  D  RL QIF  +L NA+
Sbjct: 308 EQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDRMPKYVIGDPTRLKQIFYNLLGNAV 367

Query: 700 DFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
            F+  G  V    I++ +       F V++ G  I E   +++F+ F        RR  G
Sbjct: 368 KFTEAGEIVLSAHIVERSAQLAVIRFKVRDTGIGISETRREAIFSSFTQEDMSTTRRYGG 427

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I +    L  G +S+ S     +T    +P
Sbjct: 428 TGLGLAICKELTELMAGSLSVDSRVGEGSTFTLEVP 463


>gi|288935843|ref|YP_003439902.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288890552|gb|ADC58870.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 895

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 118/218 (54%), Gaps = 7/218 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A+E K++F+ ++S+E+R+P+  I+G   L   +    L ++Q +Y+  + +S+  LL+
Sbjct: 262 REANEAKSAFLANMSHEIRTPMNGILGMAQLCLDT---PLTAEQREYLSLVMSSAQSLLH 318

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++NDILD + +++G M+++   + +   +  + +       E  I + V IS       +
Sbjct: 319 IINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVPEVLI 378

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D  RL QI + +L NA+ F+ +G  ++ +  A D   + F +++ G  I  +  K++F 
Sbjct: 379 VDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESRWRFRIRDTGIGIAPEKQKAIFE 438

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F        RR  G GLGL+I    ++L GG +++ S
Sbjct: 439 AFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVDS 476


>gi|224538854|ref|ZP_03679393.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519529|gb|EEF88634.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 329

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 158/336 (47%), Gaps = 35/336 (10%)

Query: 449 VFGPDGRIKL--SNPAFRSLW--KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           ++ P G IK       +++L+  KT E    P  H+ +     ++ Y             
Sbjct: 3   LWAPYGGIKHFEGKKCWQALYTDKTGECEFCPKRHLIDENGLPTKVY------------- 49

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--MLTFVNVTDSVRAERALTEKNEAL 562
            S+D +R   Q    + S      +  P  + Q   ++T V++    + E  L    +  
Sbjct: 50  -SWDYQRPFDQCWFRVFS------AAFPWIDGQMAHVITSVDIDHQKKIEEELIIAKDKA 102

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              D +K++F+ ++S+E+R+PL +I+GF  +L   +      ++  Y+E +  ++ +LL 
Sbjct: 103 ENLDRLKSAFLANMSHEIRTPLNSIVGFASMLVEEE---DKEERQGYIEIMQENTELLLQ 159

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++DILDL+ ++AG +  N   + + D   ++ +    K  +  + + + S         
Sbjct: 160 LISDILDLSKIEAGTLDFNMGYLNIRDFCEDILRGYEIK-EDKPVPVVLASGLPDYRIYT 218

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D++RL+Q+ +  ++NA+ F+SKG   +    ++  + I FSV + G  I  D    VF+R
Sbjct: 219 DKKRLMQVITNFINNALKFTSKGQITLEYHFKEGTNEIEFSVTDTGIGIAPDAVGQVFDR 278

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           FV  N      +G GLGLSI  S +   GG +   S
Sbjct: 279 FVKLNTF---SKGTGLGLSICRSIVEHLGGTIGAES 311


>gi|224370415|ref|YP_002604579.1| sensory box histidine kinase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223693132|gb|ACN16415.1| sensory box histidine kinase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 1003

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 38/263 (14%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L+ K EA  KA+  K++F+  + +ELR+PL  +IGF+++L     G LN +Q++YV 
Sbjct: 712 ERLLSAKIEA-EKANIAKSNFLASMGHELRTPLNAVIGFSEVLLDQFFGPLNPQQAEYVN 770

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-- 669
            I  S   LL L+NDILDL+ V+AG M+       L+ ++ E  ++I   + E  IR+  
Sbjct: 771 DILHSGRHLLTLINDILDLSKVEAGWMRFLPVPTPLDSVMGESLKTIGPMIKEKQIRLIR 830

Query: 670 ---KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-------------AA 713
              K  S   L S   D  +L QIF+ +LSNA  F+ KG T+ +              A 
Sbjct: 831 DLPKEFSKIHLHS---DPVKLKQIFNHLLSNAAKFTPKGGTITITGKIVSDVCLPSNMAL 887

Query: 714 RDN--------------GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           +D                     +++ G+ +       +F  F  V      +  G GLG
Sbjct: 888 KDTPLPDSLRTCTQPGVPGVEICIRDTGTGLTSGHSDKIFESFFQVEGGISDKSPGTGLG 947

Query: 758 LSIVESFINLHGGHVSISSSDEG 780
           LS+   F+ +H G + + S   G
Sbjct: 948 LSLARRFVEMHKGRIWVHSDGLG 970


>gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 1139

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 5/244 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R   A  ++ EAL + D  K +F  +VS+E R+PLT ++G  + L     G L++ + +
Sbjct: 328 ARVYEAERQRAEALAEIDRAKTTFFSNVSHEFRTPLTLLLGPVEDLLNQAAGKLDADEQE 387

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I  +   LL LVN +LD + ++AG ++  Y  I L     E+     + + +  ++
Sbjct: 388 ELKTIHRNGLRLLKLVNSLLDFSRIEAGRIQAAYQEIDLAGYTAELASVFRSAIEKAGLK 447

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNG 727
             V           DR    +I   ++SNA  F+ +G   V L+    N +   +V++ G
Sbjct: 448 FTVDCPPLAEPIFVDRDMWEKIVLNLISNAFKFTLQGEIEVRLRQVGKNAE--LTVRDTG 505

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           + IP +    VF RF  V         G G+GL++V   + LHGG VS+SS     +T  
Sbjct: 506 AGIPAEQVNRVFERFHRVEGTQGRTHEGTGIGLALVHELVKLHGGRVSVSSELGQGSTFT 565

Query: 786 CRIP 789
             +P
Sbjct: 566 VSLP 569



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 15/232 (6%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            ER + E+   LR       +F   +S++LR+PL ++ GF ++LK      +  +   Y+ 
Sbjct: 903  ERLVVERTAKLRDTIGELEAFSYSISHDLRAPLRSMQGFAEVLKEDCRDQIGPEGQLYLN 962

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIK 670
             IS S+  +  L+ D+L  + +     +L    I    LL  +  S  + +   + I IK
Sbjct: 963  KISDSARRMDRLIQDVLTFSKM--ARTELILEPINTEKLLQTILDSYPSFQPPFSQIAIK 1020

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGS 728
                 +L   + +   L Q  S ++ NA+ F   G+   + + A   +G      K+NG 
Sbjct: 1021 A----RLPLVLGNEAALTQCISNLIGNAIKFVQPGTVPQISVWAEEQDGYVRLFFKDNGI 1076

Query: 729  SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             IP+   + +F  F  +S  +     G G+GL+IV+  +   GG V + S +
Sbjct: 1077 GIPKISQERIFGIFQRISTGY----EGTGIGLAIVKKAVERMGGKVGLYSEE 1124


>gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
 gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
          Length = 587

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 524

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 11/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    +        K+ F+ ++S+ELR+PLT IIGF +LL  ++ GSL 
Sbjct: 119 DITERDLIERDLIAAKDRAEAGARSKSEFLANMSHELRTPLTAIIGFAELL--AREGSLA 176

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  ++  I  +S  L ++VND+LD + ++ G ++L      L  L+ +    +A +  
Sbjct: 177 PQERHWLARIEDASKALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVALLADQAE 236

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----- 717
              + + + + DG       D  RL QI   ++ NA+ F++ G  V ++ + D G     
Sbjct: 237 RKGVGLAIFVDDGLCDGLRGDTGRLRQILLNLICNAVKFTNHGG-VTIRVSEDVGAGGPP 295

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F++ + G  IP+     VF RFV       R   G GLGL+I    + L GG + + 
Sbjct: 296 QVRFAISDTGIGIPDAALDQVFQRFVQADGSVSREFGGTGLGLAICRRLVELMGGEIGVE 355

Query: 776 S 776
           S
Sbjct: 356 S 356


>gi|315922858|ref|ZP_07919098.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase
           [Bacteroides sp. D2]
 gi|313696733|gb|EFS33568.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase
           [Bacteroides sp. D2]
          Length = 505

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 129/229 (56%), Gaps = 13/229 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608
           +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+    +GS+  N++  +
Sbjct: 261 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 316

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667
           Y + +  +S +LL L++D+LD++ +++G ++ NY    ++N   N +  +   K  + +I
Sbjct: 317 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTMDVDI 376

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725
           ++++  +  +     D  RL QI   +L+NA+ F+  G ++ L    D      +FSV +
Sbjct: 377 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTD 434

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + I
Sbjct: 435 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 481


>gi|237719541|ref|ZP_04550022.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4]
 gi|229451401|gb|EEO57192.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4]
          Length = 660

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 129/229 (56%), Gaps = 13/229 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608
           +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+    +GS+  N++  +
Sbjct: 416 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 471

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667
           Y + +  +S +LL L++D+LD++ +++G ++ NY    ++N   N +  +   K  + +I
Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTMDVDI 531

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725
           ++++  +  +     D  RL QI   +L+NA+ F+  G ++ L    D      +FSV +
Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTD 589

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + I
Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 636


>gi|160934161|ref|ZP_02081548.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753]
 gi|156866834|gb|EDO60206.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753]
          Length = 947

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 15/228 (6%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK EA  +A   K+ F+  +S+E+R+P+  I+G  DL  T  + SL  K    +  I  S
Sbjct: 562 EKAEAGSRA---KSDFLSRMSHEIRTPMNAIVGLADL--TEMIPSLPEKAQINLTKIKTS 616

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LL+L+NDILD++ +++G M+L  +   LN LL +++  +  +     +  +V  + +
Sbjct: 617 SRYLLSLINDILDMSRIESGKMELEQNPFSLNVLLCDIESMLTAEAERRELTFRVEKNLQ 676

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIP 731
              F+ D  RL Q+   +LSNA  F+  G TV L+    +     G+ +  V + G  I 
Sbjct: 677 HDVFIGDTVRLRQVILNLLSNAFKFTPSGGTVWLRVTEPSFTETTGNVLVQVIDTGIGIS 736

Query: 732 EDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           E+  K +F  F     NA + Q  G GLGL+I  + I L GG + + S
Sbjct: 737 EENQKRIFRSFEQVGPNATKCQ--GTGLGLAISRNIIKLMGGEILVKS 782


>gi|126009878|gb|ABN64196.1| RcsC [Pectobacterium carotovorum subsp. carotovorum]
          Length = 951

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   ++V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 438 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 497

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL    ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +
Sbjct: 498 ---SLPQDANRLVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSN 554

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + +  + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V     RD 
Sbjct: 555 YLPLVVKKRLMLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIVFEVGCRD- 613

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I
Sbjct: 614 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 673

Query: 775 SSSDEGVTTINCRIP 789
            S     +    RIP
Sbjct: 674 ESEPGLGSLFGVRIP 688


>gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1007

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 128/245 (52%), Gaps = 10/245 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T +++T   +AE+ L    EA   A+  K++F+ ++S+E+R+P+  IIG T LL+T+   
Sbjct: 601 TVIDITARKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIRTPMNGIIGMTHLLQTT--- 657

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +  +Q  Y+E I  S+  L  L++DILDL+ +++G ++L YS   L   + E+  S   
Sbjct: 658 VITPEQEHYLENIENSANSLTTLISDILDLSKIESGKLELEYSDFSLRRCIRELLASQQF 717

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716
           ++    + ++  I+D        D+ R  QI   ++ NA+ F+ +GS  I   L A +D+
Sbjct: 718 QIQHKELMVQTDIADNVPDILRGDQLRTRQILLNLIGNAIKFTEQGSIAITARLVAQQDD 777

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              I  S+ + G  +       +F  F    N+   +  G GLGL+I +  I L GG + 
Sbjct: 778 LALIRLSISDTGIGMSPQQVDRIFAPFEQADNSITRKYGGSGLGLAICQRLIELMGGRIW 837

Query: 774 ISSSD 778
             S++
Sbjct: 838 AESTE 842


>gi|115379534|ref|ZP_01466626.1| sensory box histidine kinase/response regulator [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363462|gb|EAU62605.1| sensory box histidine kinase/response regulator [Stigmatella
           aurantiaca DW4/3-1]
          Length = 603

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 12/244 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++TD    ER L    +   +A   K  F+  +S+E+R+P+  IIG ++LL  + L 
Sbjct: 47  TLFDITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLP 106

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L     +Y   + +SS  LL L+N ILD   ++AG + L      L  LL+ +  +++ 
Sbjct: 107 PLY---QEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSV 163

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + I+V  D ++  + + D  +L Q+ + +L NA+ F+ +G+ V L   R +GD 
Sbjct: 164 KAEEKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQGA-VTLAVRRLHGDA 222

Query: 719 ---FI-FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
              F+ F V + G  IP+D    +F  F   ++    +  G GLGL+I +  + LHG  +
Sbjct: 223 EGVFLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKM 282

Query: 773 SISS 776
            + S
Sbjct: 283 RVES 286


>gi|94264869|ref|ZP_01288644.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93454690|gb|EAT04955.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 8/240 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E    +  EA   A+  K+ F+ ++S+E+R+P+  IIG   L   S+     
Sbjct: 256 DITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMNVIIGLGQLALKSEPPP-P 314

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K   Y+E I+AS+T LL L+ND LDLA ++ G M ++     L+D+LN++++ +  +  
Sbjct: 315 PKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQIPFDLSDILNKLEKLMGQRAA 374

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI- 720
           E  ++ +  ++       V D  RL Q+   + SNA+ FS KG   +  + A    D + 
Sbjct: 375 EKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSDKGEVSLNFEMADSTADTLT 434

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V++ G  I  +  +++   F        R+  G GLGLSI    + L GG + + S
Sbjct: 435 LRVTVRDTGIGIAPEQLETILQPFTQADGSSTRKYDGTGLGLSIANRLVQLMGGKLEVES 494


>gi|312880831|ref|ZP_07740631.1| response regulator receiver modulated diguanylate cyclase
           [Aminomonas paucivorans DSM 12260]
 gi|310784122|gb|EFQ24520.1| response regulator receiver modulated diguanylate cyclase
           [Aminomonas paucivorans DSM 12260]
          Length = 998

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E   AL +A   K++F+ H+S+E+R+PL  I+G + LL     G L+ +Q ++V  
Sbjct: 200 RRLEETRLALEEAHRTKDAFLAHISHEIRTPLNGILGLSRLLGE---GDLSREQEEHVSL 256

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           +     IL+ L++D+LD + ++AG +++         L  +V ++ A +  E  + ++V 
Sbjct: 257 LLLEGQILVRLLDDLLDFSKIEAGRLEVESIPFAPGQLTRDVGRAFAHRASEKGLPVEVR 316

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSI 730
           + D      + D  RL QI   +LSNA+ F+S+G  ++ L A  D    ++SV++ G  +
Sbjct: 317 VRDSVPPGALGDPNRLRQILGNLLSNAVKFTSRGRVLLELDAPGDR--LVWSVEDTGEGV 374

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +  + +F  FV       RR  G GLGL I  S   L GG + +SSS
Sbjct: 375 APEALERIFQPFVQADPSVARRHGGTGLGLPISRSLATLMGGTLEVSSS 423


>gi|77359688|ref|YP_339263.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874599|emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125]
          Length = 918

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT   +  + A+ +K+ F+  +S+ELR+PL  +IGFT  L  +    LN  Q  Y++ I 
Sbjct: 276 LTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLHKT---PLNKNQKDYLDTIE 332

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S+  L+ +++DILD + ++AG M+L      L D +NEV   +A   H+  + + + IS
Sbjct: 333 LSANSLMTIISDILDFSKLEAGAMELESIQFQLRDTVNEVMTLLAPSAHDKQLELSIYIS 392

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
                    D  RL Q+   +LSNA+ F+ KG+  +  + R    +    + SV + G  
Sbjct: 393 PQVPDHLTGDPTRLKQVLINLLSNAIKFTEKGAIKVDISHRLLDDERTSILVSVADTGVG 452

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           IP D   ++F  F        R+  G GLGL I +  +    G ++++S+
Sbjct: 453 IPVDKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGKITLNSA 502


>gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
 gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
          Length = 590

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 3/229 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+K ++++  FV +VS+EL++P+T+I GF++ L    +     +Q Q++  I   S  + 
Sbjct: 356 LKKLEQVRRDFVANVSHELKTPITSIKGFSETLLDGAMEDPQLRQ-QFLSIILTESQRME 414

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+ D+LDL+ V+    KL+  ++ LN LL EV   ++ +  E  I + + +  +     
Sbjct: 415 SLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAWID 474

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D QRL+Q+F  ++ NA+ ++  G TV +    +       V++ G  I  D    +F R
Sbjct: 475 GDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEEEEETITVHVQDTGIGIDSDEISRIFER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  V  A      G GLGL+IV+  +  H G + + S     TT + ++
Sbjct: 535 FYRVDKARSRNSGGTGLGLAIVKHLVEAHRGEIEVKSEVNKGTTFSVKL 583


>gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 676

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 26/282 (9%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI----------KNSFVQHVS 577
           ++ + +P A       + T  +RA R +T + EA+R  D            K+ F+  VS
Sbjct: 128 FAFVEMPVAHG-----DATHWLRAGRDVTARVEAIRSRDAALERAEAASVAKSRFLATVS 182

Query: 578 YELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           +E+R+PL  I+G  DL+    LG+ LN +Q  YVE +  S   LL L++ +LD + ++AG
Sbjct: 183 HEMRTPLNGILGMADLV----LGTELNPEQRTYVEAVRTSGQALLGLIDGVLDFSRIEAG 238

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKIL 695
            + L      L  L   V + +A +  +  I I + +++    + + D  R+ QI   + 
Sbjct: 239 RLDLAAEPFDLPALSEGVVELLAPRAQDKGIEIALDVAEDFPAAVLGDADRVRQILINLA 298

Query: 696 SNAMDFSSKGST-VILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            NA+ F+ +G   V L  AR    G+ + +V + G  IPE+    +F  F        R 
Sbjct: 299 GNAIKFTERGGVGVSLGFARAGTGGEVVLAVADTGPGIPEERLPILFEEFEQGDGSASRS 358

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL+I    +   GG +   S     +T    +P  E
Sbjct: 359 HEGTGLGLAITRRLVTRMGGRIEADSRLGRGSTFRVLLPLAE 400


>gi|148981902|ref|ZP_01816560.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
 gi|145960703|gb|EDK26045.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
          Length = 937

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQTDYLQTIERSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
           +++NDILD + ++AG + L          L EV    AT  HE  + + +  D K+    
Sbjct: 341 SIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPAGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  +   + DN +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDNIELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|295083983|emb|CBK65506.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 660

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 129/232 (55%), Gaps = 13/232 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608
           +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+    +GS+  N +  +
Sbjct: 416 SEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNDELKE 471

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667
           Y + +  +S +LL L++D+LD++ +++G ++ NY    ++N   N +  +   K  + +I
Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITLTNRNKTVDVDI 531

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725
           ++++  +  +     D  RL QI   +L+NA+ F+  G ++ L    D      +FSV +
Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 589

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + I  S
Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWIDKS 639


>gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1375

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 11/259 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            TF ++ +  + E  L         A + K+ F+ ++S+E+R+PL  ++G   LL+++   
Sbjct: 971  TFQDIDERKKVELELNNARLKAEAASKAKSEFLANMSHEIRTPLNGVLGMLQLLEST--- 1027

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            S +++Q +Y+E    SST L  L+ DILDL+ ++AG M L  +     DL          
Sbjct: 1028 SKDAEQDEYIEAAKKSSTRLTRLLADILDLSKIEAGKMILEEADFSFVDLKESTLGLFEL 1087

Query: 661  KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
             + E  +++  + D  L +  V D+ RL QI   ++ NA+ F+  G   +    L  + D
Sbjct: 1088 AVKEKGLKLDFVIDELLPARLVGDQIRLQQILFNLVGNAIKFTETGDVRVEACHLPCSND 1147

Query: 716  N-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            +    +F V + G  I + M   VF  F        RR  G GLGLSIV   +   GG +
Sbjct: 1148 DIQRVLFIVSDTGIGIAQGMIAQVFEPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGGSL 1207

Query: 773  SISSSDEGVTTINCRIPSK 791
            +I S++   TT    +P K
Sbjct: 1208 AIDSTEGTGTTFYLSLPLK 1226


>gi|113474471|ref|YP_720532.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
 gi|110165519|gb|ABG50059.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
          Length = 395

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 156/318 (49%), Gaps = 36/318 (11%)

Query: 498 DLFAAIITSFDDERKSL----QGTLELLSDSV----LEYSIIPLPNAQTMLTFVNVTDSV 549
           D+ A I++++DD  K      +G  + L+  +    LE +I          T  NV    
Sbjct: 79  DIKAVIVSAYDDLDKIRSAMNRGAFDFLTKPIDFQDLEITI--------QKTLENVQQLK 130

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             +R   EK+EA   A+  K+ F+ ++S+ELR+PL  IIG++++L      SL SK   +
Sbjct: 131 ENKRLKQEKHEA-EAANRAKSVFLANMSHELRTPLNAIIGYSEIL-LEDAHSLGSKDFIH 188

Query: 610 -VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  S   LL ++NDILDL+ ++AG M +++ ++ +  L+  V  +I   + +NN  
Sbjct: 189 DINNIHTSGKHLLTIINDILDLSKIEAGKMDVHWESVNIMVLIENVLATIQPLIEQNNNI 248

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF-------- 719
           +++I +      +AD  ++ Q+   +LSNA  F+  G  ++ +K A ++ DF        
Sbjct: 249 LEIICEDNQEPIMADPNKMRQVILNLLSNAAKFTENGKIILKVKVANNDEDFISQNRDCN 308

Query: 720 ------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                 I SV + G  I E+   S+F  F    +   R+  G GLGL+I   F  + GG 
Sbjct: 309 FTDKVLILSVADTGIGISEEKIDSLFQPFTQADNSTTRKYGGTGLGLAISRHFCKMMGGD 368

Query: 772 VSISSSDEGVTTINCRIP 789
           +++ S     +    + P
Sbjct: 369 ITVVSEVNKGSIFTVKFP 386


>gi|253563810|ref|ZP_04841267.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947586|gb|EES87868.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 929

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 169/354 (47%), Gaps = 50/354 (14%)

Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           K  GET D  LS  V V+    P+ R K+ +  +  +   EE        I    AT   
Sbjct: 595 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 650

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             NE + W     ++T F+ E     G +E++    + Y I  L   + ML         
Sbjct: 651 --NEWN-WVRMNVVVTKFESE----HGEVEIIG---INYDITELKETEAMLI-------- 692

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                  E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y
Sbjct: 693 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 742

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +    +
Sbjct: 743 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQG---V 799

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ D      + ++DR RL Q+ S  ++NA+ F+S GS  +    ++ G   F V + G
Sbjct: 800 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 858

Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 859 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEE 907


>gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
 gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
          Length = 1407

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 124/250 (49%), Gaps = 12/250 (4%)

Query: 549  VRAERA-LTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            + AER  L  + ++ R A E     K+ F+  +S+ELR+PL  ++G+T LL+  +L    
Sbjct: 996  LEAERTQLLAQEQSARTAAETANCAKDEFLSVLSHELRNPLNCLLGWTQLLRKQQLDE-- 1053

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +K +Q +E I  S+     L+ D+LD++ +  G M+L    + L  ++      +     
Sbjct: 1054 AKTNQALEAIERSAKAQHQLIGDLLDISRISVGQMRLEAQPVKLIPVIEAAIDVVQLAAD 1113

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              NI+I+   D    + V D+ RL Q+   +LSN++ F+  G  + +            V
Sbjct: 1114 AKNIQIQSRLDSAGRTLVGDQIRLQQVIWNLLSNSIKFTPVGGRIDITLDYSPFQGEIQV 1173

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEG 780
            ++ G  I  D    +F+RF   A R   R   G+GLGLSIV   + LHGG V ++S  EG
Sbjct: 1174 RDTGVGISADFLPYIFDRF-RQADRSPTRSNTGLGLGLSIVRHLVELHGGTVEVTSPGEG 1232

Query: 781  V-TTINCRIP 789
               T   R+P
Sbjct: 1233 QGATFTVRLP 1242


>gi|170695068|ref|ZP_02886216.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170139920|gb|EDT08100.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 933

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 7/237 (2%)

Query: 544 NVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++ D +R   A L    E    A++ K +F+ H+S+ELR+PL  I+G+  +LK  K  +L
Sbjct: 454 HLEDMIRERTAELAVAKERADAANQAKGAFLAHMSHELRTPLNGILGYAQILKCDK--NL 511

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +    +  I  S   LL ++NDILD+A ++AG  +L  S + L   +  + ++I  K 
Sbjct: 512 DRRHVDGITVIQRSGEHLLAIINDILDMAKMEAGKAELTLSDVPLEGFIYFIAETIRVKA 571

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            E  +         L + V  D +RL Q+   +LSNA+ F+  GS  +           F
Sbjct: 572 MEKGLAFACELAPNLPAAVRVDEKRLRQVLLNLLSNAIKFTETGSVRLRVGWMPPARLSF 631

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V++ G  I E    ++F  F  VS+A R Q  G GLGL+I    + L GG + + S
Sbjct: 632 EVRDTGIGIHEARLGAIFRPFEQVSDA-RHQIGGTGLGLTISRQLLRLMGGEIRVDS 687


>gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396]
          Length = 1437

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 129/248 (52%), Gaps = 11/248 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+    E+ L E       A + K+ F+ ++S+E+R+P+  I+G  +LLK +   +L 
Sbjct: 763  DITEQREYEQRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLKRT---NLE 819

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q  YV    +S+  LL ++NDILD + ++AG + L+     L+ LL +V   I   + 
Sbjct: 820  ERQQDYVHKAESSARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVIITANLG 879

Query: 664  ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719
            +  + +    D K+  ++  D  RL QI   +  NA+ F+ +G    TV LK+  ++   
Sbjct: 880  DKPLEVLFDIDPKIPDWLELDGLRLQQILINLAGNAVKFTEQGEVEITVRLKSEEEDRLV 939

Query: 720  I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + FSV++ G  I  +  + +F  F        RR  G GLGL+I    + L GG ++ + 
Sbjct: 940  LSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGGEIA-AE 998

Query: 777  SDEGVTTI 784
            S+EG  ++
Sbjct: 999  SEEGEGSV 1006


>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1431

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 171/389 (43%), Gaps = 38/389 (9%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--- 474
           ++T Q   E         Q   +D+    +    PDG I++ NPA  +L     + L   
Sbjct: 601 DITEQRRSEATLQAYSTFQKAMLDNAGHAIISCKPDGMIQVFNPAAEALLGYSADELVGK 660

Query: 475 -SPGT--HIRNIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLE---LLSD 523
            +PG    +  + A   ++  E       G+D+F       +  R++L    E   +  D
Sbjct: 661 QTPGIFHDLDEVVARARQFSAELGTTIEPGFDVF------VEKCRRNLPNEHEWAYVCKD 714

Query: 524 SVLE---YSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
              +    ++  L  A   +T       ++T      + L    EA   A+  K+ F+ +
Sbjct: 715 GTRKTVLLNVTALREADGRITGYLGIATDITPLKLTAQELVSAKEAAEAANVAKSRFLAN 774

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  ++G T+LL ++   SL++KQ   +E +  S   LL ++NDILD + ++A
Sbjct: 775 MSHEIRTPLNGVLGMTELLLST---SLSAKQQSLLETVRRSGVALLEVINDILDFSKIEA 831

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKI 694
           G ++L      L  ++ E  +  A       + +       +  S V D  RL QI   +
Sbjct: 832 GKLELEQVEFGLRQVVEEAVELFAGSAGNKKLELTYFIPADVPDSLVGDAVRLRQILLNL 891

Query: 695 LSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           + NA+ F+++G  TV    A  + D       V++ G  IP+     +F  F        
Sbjct: 892 IGNAIKFTAQGEVTVAFALAEQHADTLTLACRVRDTGIGIPDAAQAQLFTAFTQADGSTT 951

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSS 777
           RR  G GLGL+IV+  + L GG V + S+
Sbjct: 952 RRFGGTGLGLAIVKQLVQLMGGEVGLVSA 980


>gi|182702029|ref|ZP_02619493.2| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|237793660|ref|YP_002861212.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182672093|gb|EDT84054.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|229263670|gb|ACQ54703.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 543

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I     +L   K  + +  K+ QY
Sbjct: 266 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQY 324

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 325 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 384

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + I SVK+ G  
Sbjct: 385 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 444

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP D  +++F+RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 445 IPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 493


>gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
 gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
 gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|326797022|ref|YP_004314842.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
 gi|326547786|gb|ADZ93006.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
          Length = 911

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 12/246 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEY 612
           AL    + L +A + K++FV  +S+E+R+P+  +IG ++L LKT     LN++Q+ Y+  
Sbjct: 173 ALENAKQELEQALDAKSAFVARMSHEIRTPINAVIGLSNLALKTQ----LNAEQNDYLTK 228

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671
           I  S  +LL LVND+LD + ++AG++KL        +L+       +   +E N+  I  
Sbjct: 229 IKDSGDVLLGLVNDVLDFSKIEAGMLKLESVPFHPEELVRTTINMNSFSAYEKNLELITD 288

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNG 727
           I+       + D  R+ QI   +++NA+ F+S+GS  I  ++ +  +   S+K    + G
Sbjct: 289 IAKDVPTELIGDPLRIQQILINLVNNAVKFTSEGSICIRLSSEEQEEGHVSLKCEVSDTG 348

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPE+   ++F+ F        R+  G GLGL+I      L GG +++ S     TT  
Sbjct: 349 IGIPEEHMDTLFSSFAQADDSITRKFGGTGLGLTITSQLSELMGGSITVKSELGSGTTFT 408

Query: 786 CRIPSK 791
             +P K
Sbjct: 409 VHLPLK 414


>gi|304393564|ref|ZP_07375492.1| histidine protein kinase DivJ [Ahrensia sp. R2A130]
 gi|303294571|gb|EFL88943.1| histidine protein kinase DivJ [Ahrensia sp. R2A130]
          Length = 564

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 14/236 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTIL 620
           L + +     F Q +S+ELR+PL  I GF+ LL +   G L + KQ +YV  I  SS  L
Sbjct: 267 LERGESQAKKFAQ-MSHELRTPLNAIGGFSQLLASGVAGPLTTDKQREYVALIQQSSDHL 325

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISD--GK 676
           L +V D+LD++ +D G  +L+ +     D + E+ QS    M    I   I ++ D    
Sbjct: 326 LQIVGDLLDVSRIDQGHFELDVAAF---DFV-EMAQSTTAMMQAEAIAADIDLVCDMPKS 381

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735
           L + V DR+   Q+   +LSNA+ FS  GS+V L A R +G F+     + G  +  +  
Sbjct: 382 LAAVVGDRRACQQVLINLLSNAIKFSPAGSSVRLTA-RRHGRFVKIRCSDFGIGMTREFI 440

Query: 736 KSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +   F+    A  G   G GLG+S+V+  + LHGG +   S  +  TT+   +P
Sbjct: 441 DQIGRPFMQAQPASEGGPTGSGLGVSVVKGLVELHGGQIHFDSKPDEGTTVTVMLP 496


>gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
 gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
          Length = 1323

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 129/244 (52%), Gaps = 10/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E+ L E  +A     + K  F+ ++S+E+R+P+  I+G   L   +KL  
Sbjct: 580 LLDLTERKVMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTKL-- 637

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++ Q +YV  I+ S+  LL ++N+ILD + ++AG + +      L+D+L+ V   I+ K
Sbjct: 638 -DTTQRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERIDFNLDDVLDNVTAVISLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI  + ++ N  +
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFTHQGEIVITARVSQLNDQY 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I ++    +FN F    ++   Q  G GLGLSI +  + L GG +S+
Sbjct: 757 VTLGFAVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSISKQLVELMGGQISV 816

Query: 775 SSSD 778
            S++
Sbjct: 817 RSTE 820


>gi|153006633|ref|YP_001380958.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030206|gb|ABS27974.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 725

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 116/218 (53%), Gaps = 4/218 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+ELR+PL  I+G++ LL+ +  G    + ++ +  I  +   L  LV
Sbjct: 323 ANRAKDEFLATLSHELRTPLNAILGWSGLLRDA--GGDPERLARGLAVIDRNGRTLAQLV 380

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +D+LD++ + AG +++ ++ + L  ++++  +++        + I   +  +L   V D 
Sbjct: 381 SDLLDMSRIAAGRIEVEHADVDLLAVVDDAIEAVRAAARAKGVAISRSAGPELPRVVGDA 440

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   ++SNA+ F+  G +V ++  R+ G  +  VK+ G  +  D    +F+ FV 
Sbjct: 441 GRLRQVAWNLVSNAVKFTPPGGSVDVRLGREGGAAVLEVKDTGVGMSRDFLPIMFDPFVQ 500

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
                 RR  G+GLGL+I +  + LHGG +   S   G
Sbjct: 501 AEGSSVRRHGGLGLGLAITKQLVALHGGTIHAESDGPG 538


>gi|115376892|ref|ZP_01464113.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825368|ref|YP_003957726.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366071|gb|EAU65085.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398440|gb|ADO75899.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 989

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 8/242 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AER   E+ EAL   D  K +F  +VS+E R+PLT ++   +     +   L  +Q + +
Sbjct: 330 AERRRAEQLEAL---DRAKTAFFSNVSHEFRTPLTLMLAPVEDALADREEVLAPRQRERL 386

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  +   LL LVN +LD + ++AG  K+ Y    L     E+     + MH   + + 
Sbjct: 387 SLVQRNGARLLKLVNSLLDYSRLEAGRAKVAYQATDLPAFTAELVSHFESAMHRAGLVLT 446

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSS 729
           V  +   G    DR+   ++   +LSNA+ ++ +G   +  + R+ G + +  V++ G+ 
Sbjct: 447 VAMEPLAGPVWVDREAWEKVVFNLLSNALKYTLEGDIEV--SLREEGAEAVLRVRDTGTG 504

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    VF RF  V         G G+GLS+V+  + LHGG  S+ S     +T   R
Sbjct: 505 IPAEALPHVFERFHRVEGTWARSHEGSGIGLSLVQELVKLHGGSASVHSVLGQGSTFTVR 564

Query: 788 IP 789
           +P
Sbjct: 565 LP 566



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 114/245 (46%), Gaps = 9/245 (3%)

Query: 549 VRAERALTEKNE-ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +R E A+ E +E  L++A   ++ F+   S+EL++PL  +   T+ L+      + ++  
Sbjct: 738 LRREAAVREASELTLQEAVHARDDFLSVASHELKTPLAALRLQTEALERILPPEVRARVG 797

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +    +   +  L  L+  +LD++ V  G ++L    + L  L+ +    +  +M     
Sbjct: 798 ERFFAVRRQTQRLAGLIETMLDISLVATGRLQLKPEPLDLAGLVADGVAQLREEMARRGC 857

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + + S+  L   + D  R+ Q+   +LSNA+ + + G  V ++  +        V ++G
Sbjct: 858 SLTLESEASLPGKL-DAMRMGQLVQNLLSNAIKYGA-GKPVEVRLRQKGNVARLEVVDHG 915

Query: 728 SSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             +  +    +F+RF   V   H G   G+GLGL +    +  HGG +S++ +  G  T 
Sbjct: 916 IGVAPENRARIFHRFERAVPVRHYG---GLGLGLWVSRQVVEAHGGSISVTDTPGGGATF 972

Query: 785 NCRIP 789
              +P
Sbjct: 973 TVELP 977


>gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 609

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 12/252 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           + +T ++   + +TE+     K +  +  FV +VS+ELR+PLT I  +T+ L+    G+L
Sbjct: 356 IGITGTIAVLQDVTEQE----KLEASRREFVANVSHELRTPLTTIKSYTEALED---GAL 408

Query: 603 NSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             KQ   ++V  I   +  ++ LV D+L L+ +D+    L+     + ++L +V+   + 
Sbjct: 409 EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSF 468

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719
           +M + +IR  +     + + + DR  + Q+   ++SNA+ ++  G T+ + A+  + G  
Sbjct: 469 QMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGML 528

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SVK+ G  IP+     +F RF  V  A      G GLGLSI    +  HGG +++ S 
Sbjct: 529 SLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSE 588

Query: 778 DEGVTTINCRIP 789
            E  TT+   +P
Sbjct: 589 LEKGTTVTFTLP 600


>gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 444

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 12/241 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYV 610
           R +TE+    R+ ++++  FV + S+ELR+PLT+I GF + L+    G++N  ++  +++
Sbjct: 213 RDITER----RQLEQMRTEFVANASHELRTPLTSIRGFIEALRD---GAINEPETARRFL 265

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I   +  L  LV+D+L LAT++          + L  ++     + A++  +  + ++
Sbjct: 266 GIIEEETDRLTELVDDLLKLATIEERRNMFGRLPVELPGVVQRAVDTFASRARQKGVALR 325

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V ++DG L   + D++ L Q+F  +L NA+ F+ KG   I  AA + G  +  V + G+ 
Sbjct: 326 VELADG-LPPVIGDQKLLTQMFINLLDNAVKFTEKGEITIRAAAAEGGVEV-EVLDTGAG 383

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I  +    +F RF        + G GLGL+IV+  +  HGG + + S     TT +  +P
Sbjct: 384 IAPEHLPRIFERFFRGDKARTQGGTGLGLAIVKHIVEGHGGRIRVMSKPGKGTTFSMFLP 443

Query: 790 S 790
           +
Sbjct: 444 A 444


>gi|309792039|ref|ZP_07686515.1| ATPase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225932|gb|EFO79684.1| ATPase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 801

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 12/230 (5%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           D+ K  F+  +S+ELR+PLT I G+TDLL +     +  + Q++ +E +   +  + N+V
Sbjct: 557 DQAKTDFIATISHELRTPLTVIRGYTDLLLRGRGEEAPTTDQAELLEQVRLRAVDMTNIV 616

Query: 625 NDILDLATVDAGIMKLNYST----IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           N+ + +A +++G ++ +       +VL+  L+ ++Q   +K    N+ I +     L   
Sbjct: 617 NNAIMIADLESGQLETDLQPQDVELVLSMALSPLRQGFESK----NLSINLELAPDLPPV 672

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +ADR++L + F +IL NA+ ++ +G   I    R+  +      + G+ IP +M   +F 
Sbjct: 673 LADREQLRRAFGQILDNALRYTHQGGVTIQATVRNAHEIEVHFSDTGTGIPAEMLPRLFM 732

Query: 741 RFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT-TINCR 787
           RF     +   +RG GLGL+I    I   GGHV+ IS+  EG T TI  R
Sbjct: 733 RFQRVEGNNSAQRGSGLGLAITRQLIERQGGHVTVISTPGEGSTFTITLR 782


>gi|253568655|ref|ZP_04846066.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842728|gb|EES70808.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 513

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 139/255 (54%), Gaps = 12/255 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F ++T+ V+ ++ L E  E   +++ +K++F+ ++S+E+R+PL  IIGF+D++   +
Sbjct: 260 LLRFEDITEKVKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMI--CQ 317

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G    KQ +Y++ +S+++ +LL L++DILDL+ ++AG M+   +   +NDL+  + + +
Sbjct: 318 TGEEEEKQ-EYMKIVSSNNELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQM 376

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
             K    ++ I      +      DR RL Q+     +NAM F+ KGS  +   +  A+D
Sbjct: 377 QEKNTSPDVAITFTEKAEECILNTDRVRLSQVIINFTNNAMKFTPKGSIQMGYRIDEAKD 436

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  F VK+ G  IP D    VF RFV  N      +G GLGL+I    +   GG +  
Sbjct: 437 --EIYFYVKDTGIGIPADKINEVFERFVKLNTF---AKGTGLGLAICRVIVERLGGTIGA 491

Query: 775 SSSDEGVTTINCRIP 789
            S +   +    R+P
Sbjct: 492 DSKEGEGSCFWFRLP 506


>gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 693

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 7/238 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT  V A R L E       A+  K+ F+  VS+ELR+PL  I+G  DLL  ++   L+
Sbjct: 146 DVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTR---LD 202

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YVE    S   LL LV+ ILD + ++AG + L      +  L+  V + +A +  
Sbjct: 203 PEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQ 262

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
           +  + I + I+D      V D  R+ QI   +  NA+ F+  G   +  A    G     
Sbjct: 263 DKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARSGEGQGEGL 322

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + +V++ G  IPE+    +F  F          G GLGL+I    +    G +   S+
Sbjct: 323 VLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARST 380


>gi|194333604|ref|YP_002015464.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311422|gb|ACF45817.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 599

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 164/353 (46%), Gaps = 28/353 (7%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + E + V  P G I L+NPA   L+K     L  G  +R   +   R    +   DLF  
Sbjct: 257 IREAIIVTDPRGSIILANPAACKLFK-----LQCGDMLR---SRPGRKVTNAQLLDLFER 308

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           +  S     K     +    + VL+ S +P + ++ +  T   + D  R           
Sbjct: 309 VRLSSKPIVKEEMLVMTERGERVLQTSAMPVIKDSYSDGTVFVLNDITR----------- 357

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           LR  + I+  FV  VS+ELR+PLT+I G+T+ L     G+L+ ++    ++  I   S  
Sbjct: 358 LRNLERIRRDFVSSVSHELRTPLTSIKGYTETLLE---GALDDREDAMNFLRIILQESEQ 414

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ND+LDL+ +++G ++  ++ + + D++ +        + + +I +++   G L  
Sbjct: 415 LTALINDVLDLSKIESGRIEYKFTPVSIEDVVLKTVALFRRSLEKKSIDLQIQIPGDLPP 474

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
             AD+  L  +   +L NA+ + +  S  I   A    D +   V++NG+ IP+     +
Sbjct: 475 VFADKDYLEIVVRNLLDNAIKYVADDSGRIRIIAFPANDMVRLEVEDNGAGIPQKDLGRI 534

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF  V  A   Q  G GLGLSIV+  +  H G+V + S     +  +  IP
Sbjct: 535 FERFYRVDKARSRQIGGTGLGLSIVKHIVLSHKGNVEVRSRQNLGSVFSITIP 587


>gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 609

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 130/252 (51%), Gaps = 12/252 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           + +T ++   + +TE+     K +  +  FV +VS+ELR+PLT I  +T+ L+    G+L
Sbjct: 356 IGITGTIAVLQDVTEQE----KLEASRREFVANVSHELRTPLTTIKSYTEALED---GAL 408

Query: 603 NSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             KQ   ++V  I   +  ++ LV D+L L+ +D+    L+     + ++L +V+   + 
Sbjct: 409 EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSF 468

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719
           +M + +IR  +     + + + DR  + Q+   ++SNA+ ++  G T+ + A+  + G  
Sbjct: 469 QMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGML 528

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SVK+ G  IP+     +F RF  V  A      G GLGLSI    +  HGG +++ S 
Sbjct: 529 SLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSE 588

Query: 778 DEGVTTINCRIP 789
            E  TT+   +P
Sbjct: 589 LEKGTTVTFTLP 600


>gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
          Length = 464

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 125/230 (54%), Gaps = 7/230 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+ +   +L++ +E +  F  ++S+ELR+P+T + G++ +L+  +  +   +++QY+E 
Sbjct: 221 RAINDLAFSLQRVNEQRREFFANISHELRTPMTYLKGYSKVLREGRWKT-EEERNQYLEI 279

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I   +T L  LV+D+ DLA ++ G   L +  + +N+++  V +  A K  E N++I+  
Sbjct: 280 IDHEATRLTYLVDDLFDLAQMEEGRFNLEHKKVNINEIIKLVVKKTAYKALEQNLKIEYR 339

Query: 672 --ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +SD      + D  RL Q+   ++ NA+ ++ +GS  I   + D  +    V++ G  
Sbjct: 340 GGLSDKDDSIVLGDPLRLEQVLINLVENAIKYTKEGSITIYTVSNDE-NIKIKVRDTGIG 398

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + E+    +F RF  V  +      G GLGLSIV+  I LH G + + S+
Sbjct: 399 MEEEELPYIFERFYRVEKSRSRAFGGTGLGLSIVKQLIELHNGTIEVEST 448


>gi|240137118|ref|YP_002961587.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
 gi|240007084|gb|ACS38310.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
          Length = 786

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 9/244 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           AER L +K  A   A++ K+ F+ ++S+ELR+PL  I+GF +L+++   GSL S + + Y
Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S T LL++++DIL ++ ++A  +KL    I L   L      +A +    ++ I
Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSI 626

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +   G L   +AD + L QI   I+ NA+ F+ +   V L+    NG     + + G  
Sbjct: 627 DLELAGTL-HVLADERALQQILLNIIQNAVKFTPERGRVALRGRSCNGFVHLFIGDTGIG 685

Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785
           IP+     +   F +  +N  R   +G GLGL+I  S   LHGG + I  S+EG+ T + 
Sbjct: 686 IPKTAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGIGTLVL 743

Query: 786 CRIP 789
            R+P
Sbjct: 744 VRLP 747


>gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
 gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
          Length = 558

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++   D  +    V + G  I +D    +F
Sbjct: 441 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLP 552


>gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
 gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
          Length = 914

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 11/225 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL + ++ K+ F+  +S+E+R+PL  ++G   LLK ++L   +  Q  YV+ I++S + 
Sbjct: 398 EALLQ-NQAKSRFLAKMSHEIRTPLNGVLGMLQLLKETRL---DHSQRFYVDTIASSGST 453

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L+ ++NDILD A +++G + L +    L ++L++       +  E  +R+ + + +G   
Sbjct: 454 LMAVINDILDYARIESGKLSLEHIEFDLEEMLSDTLNLFTAQAMEKRLRLHMSLDEGVPR 513

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
               D  RL Q+ + +LSNA+ F+S+G   +  + R   D      F V ++G  I ++ 
Sbjct: 514 HIQGDPTRLKQVLTNLLSNALKFTSEGQVRLDVSRRRKSDGSEHLYFGVSDSGIGIRQEA 573

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              +F  F        RR  G GLGL+I +  + + GGH+ + S+
Sbjct: 574 QARLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMGGHIEVQST 618


>gi|163791202|ref|ZP_02185619.1| Two-component system, sensor histidine kinase [Carnobacterium sp.
           AT7]
 gi|159873533|gb|EDP67620.1| Two-component system, sensor histidine kinase [Carnobacterium sp.
           AT7]
          Length = 378

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 125/235 (53%), Gaps = 4/235 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S   +  +Y       +  
Sbjct: 140 EEERRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEERRYKS-EEELLKYTHTAYTKAKQ 198

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+ +   V      LN S   +  LL ++      +  + ++ I+V++  +   
Sbjct: 199 MKVLVEDLFEYTKVRQTTTPLNLSEFDMVQLLEQLVADFELEAEKRHMEIEVVTSYESIQ 258

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD ++L+++F+ ++SNA+ +   G  + ++  +   + I SV N+G  IP++    +F
Sbjct: 259 MEADTEKLVRVFNNLISNALKYGKDGKKIFIEVQKVGKEAIISVNNDGLPIPQESLNQLF 318

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +RF  V  +   +  G GLGL+I +S + LHGG++  +SSD  +T     +P K+
Sbjct: 319 DRFYRVEESRSQETGGTGLGLAIAQSIVALHGGYIY-ASSDTELTRFVMHLPLKQ 372


>gi|160899841|ref|YP_001565423.1| histidine kinase [Delftia acidovorans SPH-1]
 gi|160365425|gb|ABX37038.1| histidine kinase [Delftia acidovorans SPH-1]
          Length = 286

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 128/239 (53%), Gaps = 10/239 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + E LRKA E+K+ F+ ++S+E R+P+  I     LL     G L ++Q++ V +I  ++
Sbjct: 41  QAEKLRKATELKSHFLSYMSHEFRTPIGAIRSNARLLLDHVDGPLTTEQTRQVGFIQETA 100

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--G 675
                +VND+LDLA ++AG ++++     + DL   ++     K   +N+ + ++ +  G
Sbjct: 101 AEFSEMVNDLLDLAKIEAGRLEISPGWFEMMDLFAALRGMF--KAMADNVELSLVFEEPG 158

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSIPED 733
            L  F  D ++L QI    +SNA+ F+ +G   +  +A   GD +  FSV + G  I  +
Sbjct: 159 DLPRFYTDNRKLSQILRNFISNALKFTPQGEIKV--SAELVGDMLVKFSVADTGIGIASE 216

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              ++FN F  V +  + + RG GLGL++ +    L GG V + S+    +T +  +P+
Sbjct: 217 FHDAIFNDFTQVDSPIQKRLRGTGLGLALSKQLAQLLGGWVEVQSALGEGSTFSVIVPA 275


>gi|261822453|ref|YP_003260559.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium wasabiae WPP163]
 gi|261606466|gb|ACX88952.1| integral membrane sensor hybrid histidine kinase [Pectobacterium
           wasabiae WPP163]
          Length = 951

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   ++V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 438 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 497

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL    ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +
Sbjct: 498 ---SLPQDANRLVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSN 554

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + +  + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V     RD 
Sbjct: 555 YLPLVVKKRLMLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIVFEVGCRD- 613

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I
Sbjct: 614 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 673

Query: 775 SSSDEGVTTINCRIP 789
            S     +    RIP
Sbjct: 674 ESEPGLGSLFGVRIP 688


>gi|34498055|ref|NP_902270.1| two-component sensor/regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34103910|gb|AAQ60270.1| probable two-component sensor/regulator [Chromobacterium violaceum
           ATCC 12472]
          Length = 924

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 128/238 (53%), Gaps = 16/238 (6%)

Query: 546 TDSVRAERALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           T   R  +   E +EA RK  E+    K+  +  +S+E+R+PL  ++G   LL+ S   +
Sbjct: 371 TLEARVHKRTQELDEA-RKIAELMSRRKSEHIASISHEIRTPLNGVVGALSLLQRS---T 426

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +Q + ++    S+  LL ++ND+LD + ++AG ++L+Y ++ +  +L++V  +I  +
Sbjct: 427 LTLQQRELIDTARFSTDYLLIIINDLLDFSHIEAGQLELSYESVSVLQVLDQVMLTIHLR 486

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             E ++ ++V ++D        DR R+ QI   +L NA+ F+  G   +L A +  GD +
Sbjct: 487 AQEKDLALRVLVTDEVPAEMAMDRMRVQQILINLLGNAVKFTESGHISVLVARK--GDML 544

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             S+++ G  I ED    +F  FV  + H G   G GLGL+I     NL GG + + S
Sbjct: 545 AISIEDTGPGIAEDKQLDIFRPFVQVHMHNG---GNGLGLTIASRLSNLMGGEILLQS 599


>gi|331013207|gb|EGH93263.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 641

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 7/236 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++    
Sbjct: 438 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAA 495

Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K +     KLG  VADRQRL+Q+   +LSNA+ ++     V ++  + +     
Sbjct: 496 DANIELKALPQLPDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++
Sbjct: 555 SVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNT 610


>gi|229096517|ref|ZP_04227488.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29]
 gi|228686723|gb|EEL40630.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29]
          Length = 392

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 9/239 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT + L     KQ   + 
Sbjct: 160 HSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVEHLTEEEIKQGMGI- 218

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     +   +I+ 
Sbjct: 219 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKK--QIQF 275

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I+  +    + DR RL QIF  I+ NA+ +S +  TV ++A ++ G  +  VK+ G  I 
Sbjct: 276 INTIERIELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVIKVKDEGIGIA 335

Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +   F   N H     G GLGL+IV+  + LH G +SI S +   TTI  ++P
Sbjct: 336 KEHLPYIEQSFYQINNHAA---GAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILIKLP 391


>gi|265763669|ref|ZP_06092237.1| two-component system histidine kinase [Bacteroides sp. 2_1_16]
 gi|263256277|gb|EEZ27623.1| two-component system histidine kinase [Bacteroides sp. 2_1_16]
          Length = 511

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  D +RA R     N+A +++D +K++F+ ++S+E+R+PL  I+GF++L+    +    
Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL E+ Q    ++ 
Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLTEIYQKYENRIP 381

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722
           +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A  D+G+ I+  
Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V + G  IP D  K VF RF       Q  G GLGLS+ ++ +   GG +++ S
Sbjct: 441 VADTGCGIPSDQYKKVFERFYKINSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492


>gi|227514220|ref|ZP_03944269.1| sensor histidine kinase [Lactobacillus fermentum ATCC 14931]
 gi|227087416|gb|EEI22728.1| sensor histidine kinase [Lactobacillus fermentum ATCC 14931]
          Length = 380

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 144/294 (48%), Gaps = 37/294 (12%)

Query: 516 GTLELLSDSVLEYSIIPL---PNAQTMLTFVN-----VTDSVRAERALTEKNEALRKADE 567
           G L  ++   LE+ I P     N Q ++T VN     +T +++ ERA +EK+        
Sbjct: 101 GELHYIAQGHLEHRI-PFRVNGNQQHVITSVNALVDTITQAMQEERA-SEKS-------- 150

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI-------L 620
            K+  + +VS++LR+PLT+IIG+        LG +   Q Q  E I   S I       +
Sbjct: 151 -KDELITNVSHDLRTPLTSIIGY--------LGLIEDHQYQSEEDIVKYSHIAYDKAKQM 201

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            NLV D+ +   V      +N  T+ L  LL +V  S   +  +  + I V  +    S 
Sbjct: 202 KNLVEDLFEYTKVQQHGAPVNLMTVDLGQLLEQVGASFELEADKKGMAINVTCEPSPLSI 261

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD ++L ++FS +++NA+ +    S + L A +     + +V ++G  IP +  K +F 
Sbjct: 262 TADPEKLGRLFSNLVANALKYGHGASYIHLTAKQLGEKVVITVADDGEKIPAESVKHLFE 321

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF  V ++      G GLGL+IV+S + LH G V+ + SD+  T     +P K+
Sbjct: 322 RFYRVESSRNKATGGTGLGLAIVQSIVELHHGSVT-ARSDDQETAFVVTLPVKQ 374


>gi|226228272|ref|YP_002762378.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091463|dbj|BAH39908.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 1028

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 7/249 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M T ++VTD++  E AL +  +    A+  K+ F+ ++S+E+R+PLT I+G TDLL+   
Sbjct: 499 MGTVMDVTDAIEREEALRQAQQYAEGANRSKSEFLANMSHEIRTPLTAILGHTDLLREEA 558

Query: 599 LGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           + S   + Q Q +E I  +   LL ++NDILD++ ++AG +++      L  LL +V+  
Sbjct: 559 VRSAAPRDQVQGLETIQRAGEHLLTVLNDILDISRIEAGRLEIEPVACDLPALLLDVESL 618

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RD 715
           +  +     + ++      + S V AD  R+ QI   ++ NA+ F++ G   I     R 
Sbjct: 619 MRARAAAKGLTLETRLRNTVPSRVFADPTRVRQILMNLVGNAVKFTAYGRVTIEAGVERA 678

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            G      +V + G  + E     +F  F+       RR  G GLGL+I      L GGH
Sbjct: 679 EGQEWLTITVDDTGPGMTEQQESLLFQPFMQADGSVTRRHGGTGLGLAICRRLATLMGGH 738

Query: 772 VSISSSDEG 780
           V +  +  G
Sbjct: 739 VRLVHTAPG 747


>gi|295690718|ref|YP_003594411.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432621|gb|ADG11793.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 602

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 131/254 (51%), Gaps = 17/254 (6%)

Query: 549 VRAERALTE----KNEA------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           V  +R LTE    K EA         A+  K  F+  +S+E+R+PL  ++G   ++    
Sbjct: 193 VELQRELTENRRLKTEAQALALTAETANRAKTEFLATMSHEIRTPLNGVLGMAQIMAA-- 250

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L+  Q + ++ ++AS   LL+++N ILD++ ++AG M++N +   L+  L+ ++Q  
Sbjct: 251 -GELSPDQRRRLDTVTASGQSLLSVINAILDISKIEAGKMEINPAPFDLSAHLDALRQLY 309

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                +  +   + I++G  G  + D  RL Q+ S ++SNA+ F+  G TV +    D+ 
Sbjct: 310 GGLARDKELDFSLEIAEGAQGWRMGDADRLRQVMSNLISNAIKFTDVG-TVRVFVEGDDK 368

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             +  V ++G+ IPE     +F +F        RR  G GLGL+I ++   L GG +S S
Sbjct: 369 TIVARVTDSGAGIPEAERGRLFTKFAQLDSSSTRRAGGSGLGLAICKTLSELMGGSISYS 428

Query: 776 SSDEGVTTINCRIP 789
           +++ G       +P
Sbjct: 429 TAEGGGACFTVTLP 442


>gi|256783472|ref|ZP_05521903.1| two-component system sensor kinase [Streptomyces lividans TK24]
          Length = 498

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +     F   VS+ELR+PL  +   TD+L     G L+   +  V  IS  +T L 
Sbjct: 253 LRRMEAGARRFAADVSHELRTPLAAMSAVTDVLDEDAAG-LDEDTATAVRLISTETTKLA 311

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV+D+++++  DAG   L+   I   DL   +++++AT+  ++ +   + + G+L   V
Sbjct: 312 ALVDDLMEISRFDAGAAALHLDEI---DLAESLRRTLATRGWQDTVETGLPAPGELRGRV 368

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSV 738
            D +RL  I + +++NA+   +    + L A    R     + +V++ G  IPE +   V
Sbjct: 369 -DPRRLDVIVANLVANALRHGAPPVRLYLHAEDDPRAGRRAVVTVRDGGDGIPEAVLPHV 427

Query: 739 FNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  +A  R +  G GLGLSI    + LHGG V  ++  EG       +P
Sbjct: 428 FDRFYKSADARARSEGSGLGLSIATENVRLHGGTVRAANHPEGGAVFTVVLP 479


>gi|253565390|ref|ZP_04842845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
 gi|251945669|gb|EES86076.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
          Length = 511

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  D +RA R     N+A +++D +K++F+ ++S+E+R+PL  I+GF++L+    +    
Sbjct: 268 NTEDKLRAAR-----NKA-QESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGGIVDLDT 321

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL E+ Q    ++ 
Sbjct: 322 EEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLTEIYQKYENRIP 381

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS- 722
           +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A  D+G+ I+  
Sbjct: 382 Q-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHGEKIYVF 440

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V + G  IP D  K VF RF       Q  G GLGLS+ ++ +   GG +++ S
Sbjct: 441 VADTGCGIPSDQYKKVFERFYKINSFVQ--GAGLGLSVCKTIVEGLGGTINVYS 492


>gi|91788257|ref|YP_549209.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91697482|gb|ABE44311.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 618

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 128/242 (52%), Gaps = 11/242 (4%)

Query: 542 FVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            +   +SVR   E AL E      KA+  K+ F+  +S+ELR+PL+ I+GF  L+++   
Sbjct: 204 LIGTDNSVRKQVEVALKEAMAVAEKANLAKSDFLSSMSHELRTPLSAILGFAQLIESGTP 263

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               S Q + V+ I  +   LL L+N+ILDLA +++G + L+   + L +++ E +  + 
Sbjct: 264 QPTPS-QKRSVDQILQAGWYLLELINEILDLALIESGRLSLSLEPVSLAEVMLECETLVE 322

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           ++  +  IR+       L  FV ADR RL Q+   +LSNA+ +++ G TV+LK    +  
Sbjct: 323 SQAAKRGIRV-TFPQFSLPCFVKADRTRLKQVLINLLSNAIKYNTSGGTVVLKCVNVSPQ 381

Query: 719 FI-FSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            I   V++ G  + P  + +    FNR    A+  Q  G G+GL + +  I L GG + +
Sbjct: 382 RIRICVEDTGEGLNPAKIAQLFQPFNRLGQEANTEQ--GTGIGLVMTKRLIELMGGAIGV 439

Query: 775 SS 776
            S
Sbjct: 440 ES 441


>gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1095

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 12/244 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L +  E    A   K+ F+ ++S+E+R+PL  ++G   L +T++L   +++Q  +V+
Sbjct: 704 ERDLLKAKELAEAASRSKSEFLANMSHEIRTPLNGVLGMLQLAQTTRL---DAEQRDFVD 760

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              AS   LL ++NDILD + ++AG +++      L   L++V  +   +  +  + + V
Sbjct: 761 TALASGRSLLAIINDILDFSKIEAGKLEVITEPFSLTPFLDDVLTTFRGEARDKGLTLAV 820

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGD----FIFSVK 724
            I  G        + R+ QI   ++ NA+ F+ +GS  I       D  D     +FSV 
Sbjct: 821 DIWPGTPEHLTGGKSRVRQILFNLVGNAIKFTDQGSVTISVCPLGPDPRDGRTRLLFSVS 880

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP+ M   +F  F  V  ++  + +G GLGL IV+  I L GG + I S     T
Sbjct: 881 DTGIGIPDAMVDLIFEPFTQVDGSYMRRHQGAGLGLGIVKRLIGLLGGSMCIDSKTGRGT 940

Query: 783 TINC 786
           T++ 
Sbjct: 941 TLHV 944


>gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC
           74-1112]
          Length = 787

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+   + E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 277 AICVLVDVSSRAKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 336

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 337 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 393

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 394 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 451

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 452 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 511

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 512 VDSEPGMGSQFTVRIP 527


>gi|239905634|ref|YP_002952373.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795498|dbj|BAH74487.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 768

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 136/261 (52%), Gaps = 15/261 (5%)

Query: 542 FVNVTDSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           F+ + + + AE+      +  K +AL  A + K+ F+ ++S+E+R+PL  I+G   LL++
Sbjct: 364 FMVIVEDITAEKISELELIAAKEQAL-AASKSKSEFLANMSHEIRTPLNGIMGMLQLLES 422

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +     +S+Q++Y++    S   L +L+ DILDL+ ++ G + L      LN L+ +V  
Sbjct: 423 T---DTDSEQTEYIDIALNSGRNLTSLITDILDLSRIEQGYVALENHGFNLNHLVEDVIN 479

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKA 712
           +  T++   N+ IK   D  +   V  D  RL QI   I  N++ F+S+G    T+    
Sbjct: 480 TFITELTSKNLEIKTSIDKSIPDLVYGDSGRLRQIIFNIFGNSVKFTSRGCISLTITSLI 539

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
             +  +    + + G  IPED    +F  F  V  +   +  GVGLGLSIV+  + + GG
Sbjct: 540 NNNIINIFIEISDTGIGIPEDKLDEIFVPFTQVDGSLTRKYGGVGLGLSIVKKLLLIMGG 599

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            ++I ++D+G  T    IP K
Sbjct: 600 SITIDNNDDGGITTCIAIPFK 620


>gi|253700345|ref|YP_003021534.1| histidine kinase [Geobacter sp. M21]
 gi|251775195|gb|ACT17776.1| histidine kinase [Geobacter sp. M21]
          Length = 1361

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + L  + + L +A  +K+ F+ ++S+ELR+PL +++  + +L       L   +  Y
Sbjct: 567 RHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQGSSRLTEDEKGY 626

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +   LL+L+NDILDLA +++G  ++   ++ L  +  EV   ++    E  I +
Sbjct: 627 LSIIERNGKHLLSLINDILDLAKIESGRQEVFLESVSLRKVAAEVVDGLSVLAREKGIAL 686

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728
            + +   L + V D +RL Q+   ++ NA+ F+++GS TV L A  +  +F+  V++ G 
Sbjct: 687 SLEAPEGLPAAVIDVKRLRQMLQNLIGNAIKFTAEGSVTVRLDA--EGEEFLIEVEDTGI 744

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I     +S+F+ F        R   G GLGL+IV+    L GG VS+ S     +    
Sbjct: 745 GIAPQYLESIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSVRSELGEGSVFTL 804

Query: 787 RIP 789
           R+P
Sbjct: 805 RLP 807


>gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 962

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  IIGFT+LL  S    L  +Q  ++  I  SS
Sbjct: 282 RKEAL-EASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS---PLPRQQRDHLSTIRKSS 337

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
            ILL ++NDILD + ++AG + L+     L D++ EV   +A   H  N+  + ++ +  
Sbjct: 338 EILLTIINDILDFSKIEAGKLILDRIPFQLRDIVEEVMVMLAPAAHSKNLDLVPLVYNDV 397

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729
             + + D  R+ Q+ + +++NA+ F+  G  V+L+A+ +  D          S+ ++G  
Sbjct: 398 PDNIMGDPLRVKQVITNLVNNAIKFTQTGE-VVLRASLEEEDKESNRITLRLSITDSGVG 456

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +     +S+FN F        R+  G GLGL+I +  +   GG + + S
Sbjct: 457 LSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLES 505


>gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 158/353 (44%), Gaps = 30/353 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           ++ GV       RI L NPA   L  T  + +    HI                + L   
Sbjct: 257 MTSGVIFISEQRRIMLVNPAVEKLLGTAGHEIVGKLHI-----------EAGKSFGLSQY 305

Query: 503 IITSFDDERKSLQGT-LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           I    D   K  Q   +    + +L+ +  P         ++N     R    +      
Sbjct: 306 IDRCLDRSEKFRQEVHIYYPQERILDVNFAP---------YINFKGESRGVVVVLHDITD 356

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           +R+ +++++ FV +VS+ELR+P+T+I GFT+ L     G++  +++   +++ IS  S  
Sbjct: 357 IRRLEKMRSEFVANVSHELRTPITSIKGFTETLLE---GAMQDEETCRNFLQIISDESER 413

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  ++ DILDL+ ++   + L+   + L DL++     +  +     + I + S      
Sbjct: 414 LYRMIRDILDLSKIEQKRIPLHLGQVHLQDLISSAVAIMHDQAQRKELTITLPSPKPDIW 473

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D+  L QI   +L+NA+ ++ +G  + +K   D+ +    V + G  IPE     +F
Sbjct: 474 LMTDKDCLQQIILNLLTNAIAYTQEGGKISIKTEADSENITIQVMDTGIGIPEKELTRIF 533

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGL+IV+  + NLH GH+S+ S +   TT    +P
Sbjct: 534 ERFYRVDKARSRDSGGTGLGLAIVKHLVENLH-GHISVESKEGRGTTFTVTLP 585


>gi|237653646|ref|YP_002889960.1| PAS sensor protein [Thauera sp. MZ1T]
 gi|237624893|gb|ACR01583.1| PAS sensor protein [Thauera sp. MZ1T]
          Length = 2109

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 123/248 (49%), Gaps = 14/248 (5%)

Query: 552  ERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            ER   E+ E  R+    A   K+ F+  +S+E+R+P+  I+G   LL  S    L   Q+
Sbjct: 1596 ERKAKERAELARERAEAASRAKSDFLAAMSHEIRTPMNGILGMAQLLARS---GLAPGQA 1652

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++V+ I AS + LL +++D+LD + ++AG + L  +     + L  ++  +AT   +  +
Sbjct: 1653 EWVDAIRASGSTLLGILDDVLDFSKIEAGQLTLESAPFSPAEALAALRPMLATMSAQKGL 1712

Query: 668  RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
             +++  D  L G  + DR+ L QI   +  NA+ F+++G   +    L A          
Sbjct: 1713 VLRLEIDPALPGGVLGDRRALHQIVLNLAGNAVKFTARGFVAVRARCLPARAGRCRLGLE 1772

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            V+++G  I E+  + +F  F        RR  G GLGL+I    ++L GG + + S    
Sbjct: 1773 VEDSGIGIAEEAQRRIFTEFTQADGSITRRFGGTGLGLAICRRLVDLQGGSLGVRSRPGE 1832

Query: 781  VTTINCRI 788
             +T +C +
Sbjct: 1833 GSTFSCEL 1840


>gi|192361097|ref|YP_001983812.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190687262|gb|ACE84940.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 761

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ +++KN FV  VS+ELR+PLT+I G   L+    LG +  +    +     ++  L +
Sbjct: 518 KRIEQMKNEFVSAVSHELRTPLTSISGSLGLILNGMLGEVPVRARDMLVIAHKNALRLAH 577

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLG--S 679
           L+ND+LD+  + AG  KL++  +    +L  V+QSI + + +  N  + ++ D   G  S
Sbjct: 578 LINDLLDMEKLAAG--KLDF-YMQPQAVLPIVEQSIESMRGYAENYGVSLVFDAVAGDAS 634

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D QRL Q+ +  LSNA+ FS +GS VIL+      +   +V + G  I ++    +F
Sbjct: 635 VNIDAQRLQQVLTNFLSNAVKFSPEGSRVILRMRVQGRELCLAVTDQGPGISDEFRTRIF 694

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINC 786
            +F     +   QR G GLGL+I +  +   GG++   S   EG T   C
Sbjct: 695 QKFSQADASSSRQRGGTGLGLAISKELVERMGGNIGFDSIPGEGATFYAC 744


>gi|189467150|ref|ZP_03015935.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
 gi|189435414|gb|EDV04399.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
          Length = 806

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 139/265 (52%), Gaps = 28/265 (10%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +E+L    + Y I PL   +  L                +K E L   D +K++F+ +
Sbjct: 556 GVIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL +I+GF+ LL  +       ++ +Y++ +  ++ +LL LV+DILDL+ +++
Sbjct: 598 MSHEIRTPLNSIVGFSSLLAET---DDREERQEYIKIVETNNELLLQLVSDILDLSKIES 654

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           G      S + +N+   ++ +S+  K+ E  + +  K + D  +     D+ R +Q+ + 
Sbjct: 655 GTFDFVRSDLDVNESCMKIIKSLEMKVPETVDLVFEKYMPDCHI---YTDKNRFMQVITN 711

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NA+ F+ +G+  +        +  F V++ G  IP++   S+F RFV      Q  G
Sbjct: 712 FINNALKFTKQGTIALGYEQTAPHEIKFYVRDTGVGIPKEKIDSIFERFVKLNTFVQ--G 769

Query: 754 VGLGLSIVESFINLHGGHVSISSSD 778
            GLGLSI +S ++  GG + + S++
Sbjct: 770 TGLGLSICKSLVSQMGGKIGVESTE 794


>gi|126656540|ref|ZP_01727801.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
 gi|126622226|gb|EAZ92933.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
          Length = 389

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 12/248 (4%)

Query: 552 ERA--LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           ERA  L ++ +A  +A+    +K+ F+  +S+ELR+PL  I+G++ +L++  L     ++
Sbjct: 145 ERAKLLVQEQKARAEAENMNRLKDEFLSTISHELRTPLNAILGWSGILQSKNLDEAEIRR 204

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +  +E I  ++    +L+ D+LD++ +  G M+L+   I L  ++     ++       N
Sbjct: 205 A--LEIIERNAKSQAHLIEDLLDVSQIVTGRMRLHVRAIELLPVIEAAIDTLKPAADAKN 262

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           IR++ + D      + D +RL QI   +LSNA+ F+ K   V +   + N      V + 
Sbjct: 263 IRLQAVLDPAASPVLGDSERLQQIVWNLLSNAVKFTPKHGCVQIALQQINSHVEIVVADT 322

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV-T 782
           G  I  +    VF RF   A+    R   G+GLGL+IV   + LHGG V   S  EG   
Sbjct: 323 GQGISAEFLPYVFERF-RQANTSMTRSFGGLGLGLAIVRQLVELHGGTVQAESPGEGQGA 381

Query: 783 TINCRIPS 790
           T   ++PS
Sbjct: 382 TFTVKLPS 389


>gi|154251811|ref|YP_001412635.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
 gi|154155761|gb|ABS62978.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
          Length = 288

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 4/244 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQ 608
           R+E AL         A   K+ F+ ++S+ELR+PL  IIGF++ ++  +  G  + K  +
Sbjct: 30  RSEVALRSAKIEADMASRTKSEFLANMSHELRTPLNAIIGFSEFIQHIAASGKPSEKTGE 89

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y  +I+ +   LLN+++DILD+A +++G   L      + +L++     I  ++ E    
Sbjct: 90  YATHIAGAGRHLLNIISDILDIAKIESGTFSLATEPYDVRELVDACIVLIEPRIREKKQV 149

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNG 727
           +++ +D  L     D +R+ Q+   +LSNA  F+ +G  ++L A +  +G    +V + G
Sbjct: 150 LEIKADPSLPEVPVDARRIKQVLINLLSNAHKFTGEGGRIVLVATQTPDGGVTIAVADTG 209

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + ++        F  V  ++     G GLGL I  +   LHGG   I S     TT+ 
Sbjct: 210 IGMTKEQISHALTPFGQVQASYARGHEGTGLGLPIAAALTTLHGGEFQIFSEPGKGTTVF 269

Query: 786 CRIP 789
             +P
Sbjct: 270 FTLP 273


>gi|119493632|ref|ZP_01624281.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119452552|gb|EAW33736.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 936

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 130/245 (53%), Gaps = 15/245 (6%)

Query: 555 LTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L+EK + L+KA       ++ K+ F+ ++S+ELR+PL  I+GF  L       +L   Q 
Sbjct: 462 LSEKFQELQKAKQDAEVANQAKSRFLANMSHELRTPLNAILGFIQLFDYQ--SNLTQTQQ 519

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y++ I  S+  LL L+N++LDLA ++AG   +N +   L+ L N++    + +   + +
Sbjct: 520 EYLQTIRYSAEHLLELINEVLDLAKIEAGKTIVNSAHFDLHLLFNQLYAMFSQRCEAHGL 579

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKN 725
            ++V  +  +  ++  D ++L QI   ++ NA+ F+  GS TV  +   +       V +
Sbjct: 580 FLQVHWEDNVPQYLHGDDRKLRQILINLVGNAVKFTQAGSITVQARCLSNQRRMQIDVTD 639

Query: 726 NGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I PED+ +++F  F    H   + G GLGL+I + F  L GG++++ S     TT 
Sbjct: 640 TGQGIAPEDL-EAIFASFTQTQHN--QEGTGLGLTISQQFARLMGGNLTVQSQFGQGTTF 696

Query: 785 NCRIP 789
              IP
Sbjct: 697 TLEIP 701


>gi|332701935|ref|ZP_08422023.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1232

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             ++T+ +R E  +    E    A+  K+ F+ ++S+E+R+P+  ++G  DL   S +  L
Sbjct: 821  ADITERIRMEGEMRRAKEQAEIANRAKSDFLANMSHEIRTPMNGVMGMIDL---SLMQKL 877

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++  +Y      S+  LL+++ DILDL+ ++AG M+L      + DL+    + +A   
Sbjct: 878  PTRVREYQIMAKKSADHLLSIIGDILDLSKIEAGRMELTEDIFDVRDLVEGTVRPLALTA 937

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARD 715
             +  +++    D  +   +  D  RL Q+ + ++SNA+ F+ KG  ++          RD
Sbjct: 938  ADKGLKLLHAVDADIPPLLCGDPVRLRQVLANLVSNAVKFTHKGRVLVNVERTGHDLPRD 997

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                +FSV + G  IP +    +F  F     A   +  G GLGL+I +  + + GGH+ 
Sbjct: 998  EVRLLFSVSDTGIGIPREKLSLIFESFSQAEEATHARYGGTGLGLAISKRLVEMMGGHIG 1057

Query: 774  ISS 776
            + S
Sbjct: 1058 VES 1060


>gi|213970477|ref|ZP_03398605.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
 gi|213924795|gb|EEB58362.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
          Length = 746

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 351 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 408

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++    
Sbjct: 409 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 466

Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K +     +LG  +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 467 DGNIELKELPYLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 525

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ +EG
Sbjct: 526 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 585

Query: 781 VTTINCR 787
                CR
Sbjct: 586 -----CR 587


>gi|163842855|ref|YP_001627259.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis ATCC 23445]
 gi|163673578|gb|ABY37689.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis ATCC 23445]
          Length = 609

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + SNA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 449 QQILLNLASNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556


>gi|163736145|ref|ZP_02143564.1| sensor histidine kinase [Phaeobacter gallaeciensis BS107]
 gi|161390015|gb|EDQ14365.1| sensor histidine kinase [Phaeobacter gallaeciensis BS107]
          Length = 892

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQ 608
           R  R L E NE L +  + K++F+  VS+ELR+P+T+I  F+++L+ T  L S     S+
Sbjct: 649 RTARKLQETNEKLTQLSQQKDAFLSQVSHELRTPMTSIRAFSEILRDTENLAS--QDHSR 706

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I   +  L  L+ND+LDL+ ++ G + LN S   L D+L+    ++AT + + + R
Sbjct: 707 YAGIIHDEAQRLTRLLNDLLDLSVLENGQVSLNISAGRLGDVLD---HAVATALADGSAR 763

Query: 669 IKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKN 725
           ++V  D         +D  RL Q+F  +++NA  + +     +   AR +G ++F    +
Sbjct: 764 LRVERDAATDDMRLSSDLDRLAQVFINLIANADKYCTAADPQLRITARQSGHWLFIDFID 823

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           NG  IP     ++F +F S     +  G GLGL+I    +   GG V+  S + G
Sbjct: 824 NGDGIPPAFRTTIFEKF-SRVSPERAGGAGLGLAICREIMQRLGGDVAYLSGEVG 877


>gi|145300355|ref|YP_001143196.1| hybrid sensory histidine kinase BarA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853127|gb|ABO91448.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 903

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 13/223 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  LLKT+    L   Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTA----LTPSQTDYMQTIEKSARNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG ++L +    L D LNE    +    H+  + + +  D ++  ++
Sbjct: 341 GIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYL 400

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI---FSVKNNGSSIPEDMC 735
             D  RL Q+ + +  NA+ F+ +G+    I +    NG+ +     +++ G  I E+  
Sbjct: 401 TGDPMRLQQVLTNLAGNAIKFTERGNVDVHIEQTGGSNGNKVRLNVLIRDTGIGISEEQQ 460

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F  F        RR  G GLGL I +  +   GG +   S
Sbjct: 461 RQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFES 503


>gi|304405930|ref|ZP_07387588.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345173|gb|EFM11009.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 610

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K ++ +  FV +VS+ELR+PLT I  + + L     G+L+ +Q   ++V  I   +  ++
Sbjct: 372 KLEQSRREFVANVSHELRTPLTTIRSYAEALDD---GALDERQLADRFVSVIRNETERMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+L L+  D+  + L      + +LL E     A +  +  IR +V  D  +G+  
Sbjct: 429 RLVTDLLHLSRFDSNQVPLRRRATSVPELLEEAADRFAFQTSQKGIRTEVYIDDAVGTVW 488

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFN 740
            DR  + Q+   ++SNA+ ++  G  ++L A + +      SV+++G  IP+     +F+
Sbjct: 489 LDRDGIDQVLDNLISNAIKYTLDGGVIVLSARKPETNALAISVRDSGIGIPKKDLGRIFD 548

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF  V  A      G GLGLSI    +  HGG +++ S     TT+   +P+ +
Sbjct: 549 RFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTITLESELNEGTTVTFTLPAPD 602


>gi|28869332|ref|NP_791951.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852573|gb|AAO55646.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 746

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 351 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 408

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++    
Sbjct: 409 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 466

Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K +     +LG  +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 467 DGNIELKELPHLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 525

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ +EG
Sbjct: 526 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 585

Query: 781 VTTINCR 787
                CR
Sbjct: 586 -----CR 587


>gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 919

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 10/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q+ YVE I++S
Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAAYVETIASS 452

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
            + L++++NDILD A +++G + L      L +LL++     + +  E  + + +  D G
Sbjct: 453 GSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHLGLDRG 512

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD---FIFSVKNNGSSIP 731
                  D  RL Q+   +LSNA+ F+++G   +    R D G     ++SV ++G  I 
Sbjct: 513 VPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGIS 572

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +P
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
 gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|301383865|ref|ZP_07232283.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060595|ref|ZP_07252136.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato K40]
 gi|302134767|ref|ZP_07260757.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 775

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++    
Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 495

Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K +     +LG  +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 496 DGNIELKELPYLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ +EG
Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 614

Query: 781 VTTINCR 787
                CR
Sbjct: 615 -----CR 616


>gi|268325194|emb|CBH38782.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1036

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 13/246 (5%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKA----DEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            T +  V     V   + L ++ E L K     D++K +F+    +E+RSPL  I+G+  L
Sbjct: 780  TPVKIVGTMRDVTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASL 839

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+    G LN KQ +YV  I  S++ L  L+  +L++  ++AG  +L+   + + +++N 
Sbjct: 840  LEQ---GELNEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNN 896

Query: 654  VKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILK 711
            V +    +       I  V+ +G       D+Q++  IF  ++SNA+ ++  KG   I+ 
Sbjct: 897  VLERFGPQADAKKQTISAVVPEGT--EVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVV 954

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGG 770
              R  G     V + G  IP++     F R F+++    ++ G+GLGL+IV+ ++ LHGG
Sbjct: 955  EDRKEG-IRVCVADTGIGIPKEQLPRAFERFFMADTSLRRKGGLGLGLAIVKGYVKLHGG 1013

Query: 771  HVSISS 776
             V ++S
Sbjct: 1014 EVWVTS 1019


>gi|229115491|ref|ZP_04244897.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3]
 gi|228667904|gb|EEL23340.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3]
          Length = 444

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 9/239 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT + L     KQ   + 
Sbjct: 212 HSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVEHLTEEEIKQGMGI- 270

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     +   +I+ 
Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKK--QIQF 327

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I+  +    + DR RL QIF  I+ NA+ +S +  TV ++A ++ G  +  VK+ G  I 
Sbjct: 328 INTIERIELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVIKVKDEGIGIA 387

Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +   F   N H     G GLGL+IV+  + LH G +SI S +   TTI  ++P
Sbjct: 388 KEHLPYIEQSFYQINNHAA---GAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILIKLP 443


>gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
 gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
          Length = 558

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 441 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|255533423|ref|YP_003093795.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346407|gb|ACU05733.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 656

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 13/242 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E  L    +    + + K  F+  +S+E+R+PL  IIG  +LLK        
Sbjct: 257 DITQKKEIELELLRAKDIAEHSAKAKTDFLSVMSHEIRTPLNGIIGIANLLKLKH----T 312

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +YV  +  S+  LL L+NDILDL  +++  ++L  + + + +L+  +K    +   
Sbjct: 313 MDQEEYVRSLIFSADHLLQLINDILDLTKIESDKLELVLAEVNIFELVRNIKNQFKSLAE 372

Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
              I +K  I D      +AD  RL QI + ++SNA+ F+  G+  I    +    +  +
Sbjct: 373 AKGIVVKSFIDDDIPQRLIADPVRLGQILNNLISNAIKFTESGAVTITLSLVALTANKAN 432

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             FSVK+ G  IPE++ +++F  F     + HR +  G GLGL+I +  + LH G + + 
Sbjct: 433 VHFSVKDTGMGIPEELHETIFESFKQVQQDVHR-KHTGTGLGLAITQKLVELHDGRILLK 491

Query: 776 SS 777
           S+
Sbjct: 492 ST 493


>gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1442

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 10/227 (4%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+  +S+E+R+P+  I+G T LL  +   SL+ +Q  +V+ I     +LLNL+NDILD +
Sbjct: 819  FLATISHEIRTPINAILGMTSLLLDT---SLDPQQQDWVQTIRYGGEVLLNLINDILDFS 875

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690
             +++  ++L      L  L+ E+   +A +    ++ +    D  L  + + D  RL QI
Sbjct: 876  KIESQKLELEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLRQI 935

Query: 691  FSKILSNAMDFSSKGSTVILKAA--RDNGD--FIFSVKNNGSSIPEDMCKSVFNRF--VS 744
             + +LSNA+ F+ +G  V+   A  RD         V++ G  IP +    +F  F  V 
Sbjct: 936  LANLLSNAIKFTPQGEVVVTVEAGERDPEKQWVNVQVRDTGIGIPPEKLDRLFKPFSQVD 995

Query: 745  NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++   Q  G GLGL+I +    L GG + + S     +T   RIP K
Sbjct: 996  SSISRQFGGTGLGLAISQRLCQLMGGAIGVESQPGQGSTFRFRIPLK 1042


>gi|110633234|ref|YP_673442.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110284218|gb|ABG62277.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 548

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTI 619
           A R  DE+  S    VS+ELR+PL  I+GF DLL     G   N KQ +YVE I  + T 
Sbjct: 287 ACRSRDEMLAS----VSHELRTPLNAIVGFADLLANEMFGKFANDKQREYVEVIREAGTH 342

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL++VN ILD++ V +G   +        D +         +    ++ +K    G +G+
Sbjct: 343 LLSVVNAILDVSKVQSGAYGVEAKPFHFEDAVRLCMAMTTHQAQAKSVELKADIAGDIGT 402

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D+  + Q+   +LSNA+ F+  G  V + A R      F+V + G  I  +  + V 
Sbjct: 403 VRCDKNAVQQVLINLLSNAVKFTPSGE-VKVTAHRSGDRLEFTVSDTGIGISAEDLELVG 461

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             F  V N +  +  G GLGL++V+  + L GG +SI S+    T ++  +P+
Sbjct: 462 TPFMQVRNDYTRKCEGTGLGLALVKGLVRLQGGGLSIESAPGRGTRVHVSLPA 514


>gi|329909928|ref|ZP_08275149.1| sensor histidine kinase/response regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546367|gb|EGF31381.1| sensor histidine kinase/response regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 500

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 10/246 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + +  L    EA   A+  K  F+  +S+ELR+PL +I+G+  +L+ 
Sbjct: 17  QTRLLLQEIAAHEKTDAELQRAKEAAESANLAKTRFITGMSHELRTPLNSILGYAQILQF 76

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               ++   +   ++ I  S   LL+L++ +LD+A ++AG M+L+   + L   L ++ Q
Sbjct: 77  DP--AMPPHRKDAIDVIHRSGNHLLSLIDGLLDIAKIEAGKMRLDTDELALPAFLEQIVQ 134

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714
             A    E  +    + DG+L   V AD +R+ QI   +L NA+ F+  G+ T+ L   R
Sbjct: 135 MFAPLAAEKGLAFAFVCDGRLPGVVRADHKRVRQILINLLGNALKFTDTGAVTLRLNYVR 194

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           D     FS+++ G  +  D  + +   F R VS   R    G GLGL+I     ++ GG 
Sbjct: 195 DMAH--FSIEDTGIGMTADEAERIFFPFERTVSADLRAA-AGTGLGLTISNMLTHIMGGD 251

Query: 772 VSISSS 777
           ++++S+
Sbjct: 252 LTVTST 257


>gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
 gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRAS 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I ++    +F
Sbjct: 470 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|261253892|ref|ZP_05946465.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891]
 gi|260937283|gb|EEX93272.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891]
          Length = 929

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT+    L + Q+ Y++ I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTT----LTNSQTDYLQTIENSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
           N++NDILD + ++AG + L          L EV    AT  HE  + + +  D K+    
Sbjct: 340 NIINDILDFSKLEAGKLALENIPFDFQASLEEVVNLQATSAHEKGLELTLKIDPKVPAGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+ +G+   +V L++ + D+ +  F V++ G  I E    
Sbjct: 400 VGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDSVELQFMVRDTGIGISERQQS 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501


>gi|167461323|ref|ZP_02326412.1| Sensory box histidine kinase YycG [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381341|ref|ZP_08055344.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154917|gb|EFX47188.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 608

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 12/250 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T S+   + +TE+ +  R   E    FV +VS+ELR+PLT I  + + L     G++  
Sbjct: 357 ITGSIAVLQDVTEQEKLERSRKE----FVANVSHELRTPLTTIKSYLEALGD---GAIED 409

Query: 605 KQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            Q   +++      +  ++ LV D+L L+ +D+    L  +   ++D+L EV    A + 
Sbjct: 410 PQLSERFLGVTRNETERMIRLVTDLLHLSRLDSNQATLVKTPTNISDMLEEVADRFAVQS 469

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
            +  IRI V  D ++GS   DR ++ Q+   +LSNA+ +++    V ++A R + D++  
Sbjct: 470 RQRKIRIDVSVDARVGSISIDRDKIDQVLDNLLSNAIKYTADEGIVRIQANRLDHDWVEI 529

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  IP+     +F RF  V  A      G GLGLSI    +  HGG + + S   
Sbjct: 530 SVEDTGIGIPKKDLSRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGSIQLESEYN 589

Query: 780 GVTTINCRIP 789
             T ++  +P
Sbjct: 590 VGTRVSFTLP 599


>gi|110834168|ref|YP_693027.1| sensor histidine kinase/respose regulator [Alcanivorax borkumensis
           SK2]
 gi|110647279|emb|CAL16755.1| sensor histidine kinase/respose regulator [Alcanivorax borkumensis
           SK2]
          Length = 1222

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 15/239 (6%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +K   L  +   K+ F+  +S+ELR+PL +I+  ++ L  +K G+L  KQ ++ + I ++
Sbjct: 541 DKIRELEMSSRYKSEFLSTMSHELRTPLNSILILSNALAQNKKGNLEEKQVEHAQVIHSA 600

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
            T LL+L+NDILD++ ++ G M +    +   +++   +++ A      N+  KV + D 
Sbjct: 601 GTDLLSLINDILDISKIEEGKMDVIIDDLSPTEIVEHFRRNFAHVAESRNLDFKVELGDT 660

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------------FSV 723
               F  DRQRL QI   +LSNA+ F+  GS ++     D  + +            F+V
Sbjct: 661 LPDHFYTDRQRLEQIIKNLLSNALKFTEHGSVMLSLTQPDVSETLPSRHLVPGQTLKFAV 720

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            + G+ I  +  K +F  F        R+  G GLGL+I      L GG + + S  EG
Sbjct: 721 TDTGTGIAREKQKLIFEAFQQADGTTSRKYGGTGLGLTISRELARLLGGEIGLYSDGEG 779


>gi|301161869|emb|CBW21413.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 929

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 169/354 (47%), Gaps = 50/354 (14%)

Query: 434 KVQGETID-HLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           K  GET D  LS  V V+    P+ R K+ +  +  +   EE        I    AT   
Sbjct: 595 KNMGETEDIPLSSVVGVYDKMHPEDRQKVFD-FYEKVLAGEEKDFRSEMRILKPGAT--- 650

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             NE + W     ++T F+ E     G +E++    + Y I  L   + ML         
Sbjct: 651 --NEWN-WVRMNVVVTKFEPE----HGEVEIIG---INYDITELKETEAMLI-------- 692

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                  E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y
Sbjct: 693 -------EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE---DMEERCEY 742

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +    +
Sbjct: 743 IKIVQENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNILCEDIVRSSQIKVPQG---V 799

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ D      + ++DR RL Q+ S  ++NA+ F+S GS  +    ++ G   F V + G
Sbjct: 800 ELVFDPHPSDCTVISDRNRLHQVISNFVNNALKFTSSGSIHVGYEKKEEG-VEFYVSDTG 858

Query: 728 SSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             I ++    +F RFV   S  H     G GLGLSI +S +   GG + + S +
Sbjct: 859 IGISKEQLTHIFERFVKLNSFIH-----GTGLGLSICKSIVEQLGGVIGVDSEE 907


>gi|157374520|ref|YP_001473120.1| Signal transduction histidine kinase-like protein [Shewanella
           sediminis HAW-EB3]
 gi|157316894|gb|ABV35992.1| Signal transduction histidine kinase-like protein [Shewanella
           sediminis HAW-EB3]
          Length = 1468

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 171/379 (45%), Gaps = 25/379 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T ++    K N  + +    ++    G+ V    G+I   N  F  LWK ++  L  G
Sbjct: 548 DITERMTASIKANEALSLMHSVLESTDNGILVTSIQGKILQVNNRFMELWKIDDKTL-IG 606

Query: 478 THIRNIAATCSRYYNES---DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                IA     +Y +S   D       I   + D    L  TL  +   V E   +P+ 
Sbjct: 607 RDDSEIA-----HYAKSQLVDSASFIQGIERLYRDPELELFDTLAFIDGRVFERVSLPMM 661

Query: 535 NAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   +L    +F +VT+S++    L    E    A + K+ F+  +S+E+R+P+  ++G 
Sbjct: 662 SEGGVLGRVWSFRDVTESMKIRSELMLAKEGAELAVKAKSEFLASMSHEIRTPMNGVLGM 721

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL  +KL      Q + V    +S+  LL L+NDILD + +DAG ++L      L  +
Sbjct: 722 LGLLLNTKLSDF---QRRRVSIAQSSAESLLTLINDILDYSKIDAGKLELENLDFNLRGM 778

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L E  + +A    + ++ + +   G   S V  D  RL Q  + +  NA+ F+ +G  VI
Sbjct: 779 LGEFAEGMAHLAQDKDLELILDVKGVEYSMVNGDPGRLRQALTNLTGNAIKFTKQGEVVI 838

Query: 710 LKAARDNGDFIF-----SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
                   D        SV + G  I ED   S+F+ F        R+  G GLGL+IV+
Sbjct: 839 KAELVPCDDETLWRLKCSVSDTGIGIAEDKIDSLFDSFSQVDASTTRKYGGTGLGLAIVD 898

Query: 763 SFINLHGGHVSISSSDEGV 781
              NL GG VS+  S+EGV
Sbjct: 899 KVCNLMGGSVSV-ESEEGV 916


>gi|115522390|ref|YP_779301.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115516337|gb|ABJ04321.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 749

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 7/237 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    ERAL E  +    A+  K+ F+   S+E+R+PL  IIG + LL  ++   L+
Sbjct: 207 DVTERTETERALAEARDLACAANRAKSRFLAMASHEIRTPLNGIIGMSGLLLDTE---LS 263

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YV+ +  S   L +L+ ++LD + ++AG + L+     L  L+ +  + +A +  
Sbjct: 264 PEQITYVKAVKTSGDALASLIEELLDYSKIEAGKIDLDAKPFALTALIEDTAELLAPRAQ 323

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721
              + I    D +L + V  D  RL Q+   +  NA+ F+  G  ++I++      +  F
Sbjct: 324 ARQLEIATYVDERLPAHVIGDAARLRQVLLNLAGNAIKFTETGGVSLIVEPGLMPDEIRF 383

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            V + G  I  +    +F  F     +  R   G GLGLSI E  +   GGH+++ S
Sbjct: 384 LVSDTGIGIAPEAQARIFREFEQADEQTARNFGGTGLGLSISERIVKRMGGHIALRS 440


>gi|288801698|ref|ZP_06407140.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
 gi|288335740|gb|EFC74173.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
          Length = 878

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 5/255 (1%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +++ F+ +   V   R +  K      A++ K  F  ++S+ELR+PLT I    + +   
Sbjct: 343 SIILFLLIGIMVYIYRTILMKRRIEEDANKAKLQFFTNISHELRTPLTLIADPVNYIIHD 402

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +LNS+Q   ++ +  +  +L  LV++ILD   V  G M+L  S   L++ + +    
Sbjct: 403 D--NLNSQQRSMLQIVQRNVLVLTQLVSEILDFRKVQNGKMELRLSDFNLSESMKQWIML 460

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            +    + +I I + +   +    AD+ ++ +I   +LSNA+ ++S+G  + L A  +NG
Sbjct: 461 FSASAQKKHIAISMNAPDAV-MLRADQDKIERICYNLLSNALKYTSEGGEITLTAKEENG 519

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             + SV +NG  I  D    +F+RF    + G  RG G+GL+IV++F  LH G VS +S 
Sbjct: 520 RVMISVADNGCGISSDELPYIFDRFYQAKNAG--RGTGIGLAIVKAFTELHHGEVSATSI 577

Query: 778 DEGVTTINCRIPSKE 792
           +   +T    IP ++
Sbjct: 578 EGKGSTFTIHIPVRQ 592


>gi|229102610|ref|ZP_04233314.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28]
 gi|228680837|gb|EEL35010.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28]
          Length = 444

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 9/239 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVE 611
            +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LKT + L     KQ   + 
Sbjct: 212 HSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVEHLTEEEIKQGMGI- 270

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     +   +I+ 
Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKK--QIQF 327

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I+  +    + DR RL QIF  I+ NA+ +S +  TV ++A ++ G  +  VK+ G  I 
Sbjct: 328 INTIERIELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVIKVKDEGIGIA 387

Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +   F   N H     G GLGL+IV+  + LH G +SI S +   TTI  ++P
Sbjct: 388 KEHLPYIEQSFYQINNHAA---GAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILIKLP 443


>gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
 gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
          Length = 545

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL +++  +  K  E  I ++V +  K  S
Sbjct: 369 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIRMVLDNKAGEKEISLQV-NALKGVS 427

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 428 VIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 487

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 539


>gi|218437127|ref|YP_002375456.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218169855|gb|ACK68588.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1927

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 133/258 (51%), Gaps = 16/258 (6%)

Query: 533  LPNAQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            LP+   +   V +  +V  +R   L +  E    A+  K+ F+ ++S+E+R+P+  I+GF
Sbjct: 1400 LPDQTVIWNGVTIDLTVEKQREAELKQAKEVADLANRAKSEFLANMSHEIRTPMNAILGF 1459

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             DLL  + L + N  Q  Y+  I+++   LL L+NDILDL+ ++AG ++L Y  + L  L
Sbjct: 1460 CDLL--NHLVTDNRGQF-YLSAIASAGKTLLALINDILDLSKIEAGKLQLYYEPVNLPTL 1516

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + E+ Q  + K  E  I++ +  D  + +  + D  RL QI   ++ NA+ F+ +G   I
Sbjct: 1517 IQEIYQIFSQKAEEKQIKLLMEIDSSVPTGIIFDEVRLRQILFNVVGNALKFTEEGYVKI 1576

Query: 710  -----LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
                     +D  D I    ++++ G  I  +    +F+ F+ +  +  R+  G GLGL+
Sbjct: 1577 SLNSYHSETQDQEDSITLKITIEDTGIGIAPEQQTQIFDAFIQSDGQNNRKYGGTGLGLA 1636

Query: 760  IVESFINLHGGHVSISSS 777
            I +    + GG + + S 
Sbjct: 1637 ITKRLTTILGGKIELYSQ 1654


>gi|117618949|ref|YP_856744.1| two-component system sensor protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560356|gb|ABK37304.1| two-component system sensor protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1060

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EA R A  +K  F+ ++S+E+R+P+  I+G   LL+    G L+  Q   V  I  + 
Sbjct: 339 QQEAARLA-RVKGDFIANMSHEIRTPMNAIMGLAYLLEQ---GGLDDGQRALVRKIHQAG 394

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL ++NDILD + +++G ++L      L ++L+ V   ++T +   ++ + V S  + 
Sbjct: 395 QALLGIINDILDFSKIESGRLELEQVPFSLEEVLDHVAAIMSTCVGNKHLELVVSSAPEQ 454

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN-GDFIFSVKNNGSSIPE 732
            +  V D  RL Q+   +  NA+ F+ +G     V L+A +D     +F V++ G  IP 
Sbjct: 455 AAHLVGDALRLEQVLLNLTGNAIKFTERGEVEVRVELEAEQDGMATLLFRVRDTGIGIPP 514

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +   ++FN F        RR  G GLGL+I    +NL GG + ++S
Sbjct: 515 EQQANIFNAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGDIGVTS 560


>gi|255534918|ref|YP_003095289.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
 gi|255341114|gb|ACU07227.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
          Length = 915

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 130/249 (52%), Gaps = 11/249 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            Q +   V++T+  + E  +    E   KA  +K+ FV ++S+E+R+PL  IIGFT+LL 
Sbjct: 370 VQVIANAVDITERKKMEDEIVAAKELAEKAYVLKSEFVANMSHEIRTPLNGIIGFTELLL 429

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   +L+  Q QY++ I+ S   L +++NDILD + ++   +KLN   + + +L++E  
Sbjct: 430 ET---NLDDTQRQYLDIINQSGVSLYSIINDILDFSKLEKHKLKLNLDKVEIEELVSEAF 486

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA 713
             +A    +  + + +  D  +  +V  D  RL Q+F  +LSNA+ F+ +G  V+ +K  
Sbjct: 487 NIVAYSNTKKRLEMLIDIDDNIPRYVWTDEMRLKQVFVNLLSNALKFTEEGEIVLYVKVL 546

Query: 714 RD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            D       F F V++ G  I ++    +F+ F        ++  G GLGL+I    + L
Sbjct: 547 ADLSEGKKKFRFGVRDTGVGINKEKQAVIFSAFSQEDGSITKKYGGTGLGLTISNQILEL 606

Query: 768 HGGHVSISS 776
            G  + + S
Sbjct: 607 AGSVLQLES 615


>gi|256377809|ref|YP_003101469.1| histidine kinase [Actinosynnema mirum DSM 43827]
 gi|255922112|gb|ACU37623.1| histidine kinase [Actinosynnema mirum DSM 43827]
          Length = 616

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 5/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR+A E +  F   +S+ELRSP+ +++G T LL       L  +Q + V  ++
Sbjct: 212 LEEKSTQLREAAEARTRFWSTISHELRSPVNSVVGLTRLLAAPGSDPLTEEQRRQVTLVN 271

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL LVN+++D A  ++G ++   + + L  ++ +++ ++ T     ++ + V + 
Sbjct: 272 QAGETLLALVNELMDTAKAESGSLRPRPTPVDLPLVVAQLRGALQTTARTPDVALVVDAP 331

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIP 731
             L   V D   L++I   +LSN + F+ +G    TV            F+V + G  IP
Sbjct: 332 ADLPVLVTDETMLVRILRNLLSNGLKFTERGEVRLTVRPDGTGPEPGLRFTVADTGIGIP 391

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + VF  F  V+N  +    G GLGL        + GG + ++S+    T +  R+P
Sbjct: 392 AEEQQRVFEEFYQVANKLQVGASGTGLGLPYARKLARILGGDLVLTSAPGVGTKVELRLP 451


>gi|206602092|gb|EDZ38574.1| Putative multi-sensor signal transduction histidine kinase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 453

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 121/235 (51%), Gaps = 7/235 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           +R+ + I+  FV +VS+E+R+PLT+I GF + L     G +N  ++  ++   I + +  
Sbjct: 211 IRQLERIRKDFVANVSHEIRTPLTSIRGFAEALHD---GGINDPKTAREFSGIILSHAER 267

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L N+V+D+L L+ ++ G   + Y ++ L+  +  ++   A    +  IR  V    +  +
Sbjct: 268 LGNIVSDLLHLSELETGKAIMRYGSVSLSRQIAHIRDVYADHARKKGIRFIVQLPEETLT 327

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  D  ++  +   ++ NA+ ++ +G  V     R+    +F V+++G  IP      +F
Sbjct: 328 YETDEGKMDLVLGNLVDNALKYTPEGGEVFFGGWREGDAIVFEVRDSGVGIPRTEVDRIF 387

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  V  A   +  G GLGLSIV   + +  G V ++SS    +T   R+PS+E
Sbjct: 388 ERFYRVDRARSREMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFLVRVPSRE 442


>gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 915

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 406 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 465

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 466 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITAN 522

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 523 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 580

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 581 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 640

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 641 VDSEPGMGSQFTLRIP 656


>gi|124515321|gb|EAY56831.1| putative periplasmic sensor signal transduction histidine kinase
           [Leptospirillum rubarum]
          Length = 506

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 3/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL E    L     +K+ FV   S+ELR+PLT+I GF  +L   KLG L  +Q   +  
Sbjct: 247 RALNEMARKLGDLSRMKSEFVTIASHELRTPLTSIRGFLSMLNRGKLGPLTPEQQNGLAI 306

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L+ LVN +LDL  +++G ++ +   + L  LLN ++        + NI  ++I
Sbjct: 307 VQEEVDHLVELVNGLLDLGRIESGQVRFDIQEVDLLALLNRIRSRHEAMAEQGNITFRLI 366

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D +L   +  D  ++ QI   +L NA  F+  G  V L+ +R +      V++ G  I 
Sbjct: 367 LDPELPPKIRTDPGKVAQILDNLLGNAFKFTPAGGEVELEVSRKDCQLEIEVRDTGIGIT 426

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F +F  V+  +   R G+GLGL+I    +    G + +  +    T     +P
Sbjct: 427 QESLPFLFEKFYQVAPFNNRTREGLGLGLAITRGIVLNMEGEIHVRPNTPRGTVFRVTLP 486


>gi|30020112|ref|NP_831743.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|229127408|ref|ZP_04256402.1| hypothetical protein bcere0015_18590 [Bacillus cereus BDRD-Cer4]
 gi|29895662|gb|AAP08944.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|228656027|gb|EEL11871.1| hypothetical protein bcere0015_18590 [Bacillus cereus BDRD-Cer4]
          Length = 443

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLN 622
           KA+++KN F+  +S+E+R+PLT I G+++ LKT   L     KQ   +  IS  +  L++
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI--ISGETDRLIH 279

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + + +    L    + L D+L E    +  K  E  I+     D      + 
Sbjct: 280 LVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRM--ELMG 337

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I ++    +   F
Sbjct: 338 DRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSF 397

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N H     G G+GL+IV+  + LH G +S++S +   TTI  ++P
Sbjct: 398 YQINNHAA---GAGIGLAIVKKMVELHSGVLSVTSKEGIGTTILIKLP 442


>gi|333023795|ref|ZP_08451859.1| putative sensory box histidine kinase/response regulator
           [Streptomyces sp. Tu6071]
 gi|332743647|gb|EGJ74088.1| putative sensory box histidine kinase/response regulator
           [Streptomyces sp. Tu6071]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 8/243 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EKN+ L      +  F  +VS+ELR+P+ ++I    LL       L+ +QSQ V  + 
Sbjct: 193 LEEKNQELELVQAYRARFWANVSHELRTPVNSVIALAQLLLDPAGDPLSEEQSQQVSLMR 252

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS + LL LV+++LD+A  ++G ++   + + L  LL++++ ++    H   + + V   
Sbjct: 253 ASGSTLLALVDELLDVAKAESGRLEPLVADVDLRPLLHQLRGTLRGTAHP-EVTLHVPDH 311

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI 730
            +  +   D   L ++   ILSNA+ F+  G  V L+      D    F+F V + G  I
Sbjct: 312 RQSSALHTDEVMLTRVLRNILSNALKFTRTGH-VRLEIEEHGTDADARFVFRVTDTGVGI 370

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     VF  F  V   H+  R G GLGL        L GG +++SS+    T +   +
Sbjct: 371 PEPEIDRVFEEFYQVRGPHQRGRAGTGLGLPYARRLTQLLGGSLTLSSTLGKGTVVVIDL 430

Query: 789 PSK 791
           P++
Sbjct: 431 PAR 433


>gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
 gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++   D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLP 581


>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1610

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 129/248 (52%), Gaps = 14/248 (5%)

Query: 544  NVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T    AE AL E ++EALR A ++K  F+  +S+E+R+P+  IIG T LL  +   +L
Sbjct: 1058 DITSRKAAEHALAEARDEALRAA-QVKADFLATMSHEIRTPMNAIIGMTGLLLDT---AL 1113

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              +Q ++ + +  SS  LL L+NDILD + ++AG +        L   + +  + +A + 
Sbjct: 1114 TKEQHEFADSVRRSSDGLLTLLNDILDFSKIEAGKLHFEQLPFDLRMTVEDTVELLAEQA 1173

Query: 663  HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
                + +  + D  +  + V D  RL QI   ++ NA+ F++ G  V L   R+    + 
Sbjct: 1174 QSKGLELIGLVDAAVPTAVVGDPGRLRQILVNLVGNAIKFTAAGE-VFLHVTRETQGGLD 1232

Query: 721  ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F++K+ G  IPE +   +F+ FV       RR  G GLGL+I +  ++   G + + 
Sbjct: 1233 LLRFTIKDTGIGIPEAVQGRLFHAFVQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVE 1292

Query: 776  S-SDEGVT 782
            S S +G T
Sbjct: 1293 SHSGQGST 1300


>gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
 gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
          Length = 571

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 338 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 453

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 454 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGKGTTFTVVLP 565


>gi|256828852|ref|YP_003157580.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578028|gb|ACU89164.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 862

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 135/254 (53%), Gaps = 12/254 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++   AE  L    +    A++ K+ F+ ++S+E+R+PL  ++G   +L+  ++G L+
Sbjct: 455 DISERKEAELRLEAAKKQAEVANQAKSEFLANMSHEIRTPLNGLLG---MLQLVRMGDLD 511

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++SQY++    S   LL ++NDILDL+ +++G  +L      ++ L+  V ++      
Sbjct: 512 AERSQYLDVAMNSGEGLLAVINDILDLSKIESGKFELAPVDFNVHALVQSVGETFRFPAR 571

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGD 718
              + + V +D  +  F+ AD+ R+ QI   ++ NA+ F+  G   I  +      + G 
Sbjct: 572 SKGVELIVETDADMPVFIHADQVRIRQILYNLVGNAVKFTLAGEIRISLSMPFQTGNRGQ 631

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSI-S 775
               V + G  IP D   ++F  FV  S A + +  G GLGLSIV+  +   GG V + S
Sbjct: 632 MEIRVADTGVGIPLDQQAALFEPFVQASTAPKTRGSGTGLGLSIVKRIVGFMGGRVRLDS 691

Query: 776 SSDEGVT-TINCRI 788
           +  EG T T++ ++
Sbjct: 692 TPGEGTTLTVSVKV 705


>gi|289767350|ref|ZP_06526728.1| two-component system sensor kinase [Streptomyces lividans TK24]
 gi|289697549|gb|EFD64978.1| two-component system sensor kinase [Streptomyces lividans TK24]
          Length = 493

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +     F   VS+ELR+PL  +   TD+L     G L+   +  V  IS  +T L 
Sbjct: 248 LRRMEAGARRFAADVSHELRTPLAAMSAVTDVLDEDAAG-LDEDTATAVRLISTETTKLA 306

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV+D+++++  DAG   L+   I   DL   +++++AT+  ++ +   + + G+L   V
Sbjct: 307 ALVDDLMEISRFDAGAAALHLDEI---DLAESLRRTLATRGWQDTVETGLPAPGELRGRV 363

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSV 738
            D +RL  I + +++NA+   +    + L A    R     + +V++ G  IPE +   V
Sbjct: 364 -DPRRLDVIVANLVANALRHGAPPVRLYLHAEDDPRAGRRAVVTVRDGGDGIPEAVLPHV 422

Query: 739 FNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  +A  R +  G GLGLSI    + LHGG V  ++  EG       +P
Sbjct: 423 FDRFYKSADARARSEGSGLGLSIATENVRLHGGTVRAANHPEGGAVFTVVLP 474


>gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 810

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 15/258 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +  +VT   R E+AL    +    A+  K+ F+  +S+E+R+P+  ++G   LL ++KL 
Sbjct: 266 SMTDVTQRKRDEQALQVARDKAESANRAKSQFLAVMSHEIRTPMNGVMGMAALLASTKL- 324

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + +QS Y+  I +S   LLN+++++L  + ++AG ++L  +   + + L    Q I+ 
Sbjct: 325 --DEEQSAYLRTIESSGESLLNIIDEVLSFSKLEAGNIELEQNAFNIGECLTSALQIISP 382

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
              E  + + +  D  L    + D  ++ Q+   +L NA+ F+  G   +   A ++ D 
Sbjct: 383 MAKEKGLELILNIDSSLPLQVIGDESKIKQVLVNLLGNAVKFTHAGEIELRAKAENHEDP 442

Query: 719 --------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
                      +V++ G  I  D  KS+F  F        RR  G GLGL+I  S + L 
Sbjct: 443 TTGENTKLIKLTVRDTGIGISPDAIKSLFEPFTQEDASTTRRYGGTGLGLAISRSLLELM 502

Query: 769 GGHVSISSSDEGVTTINC 786
           GG + I S+    +T  C
Sbjct: 503 GGAIEIDSAPGEGSTFTC 520


>gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
 gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
          Length = 933

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R  
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRVE 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|162448620|ref|YP_001610987.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159202|emb|CAN90507.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 623

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASST 618
           E+ ++A   +   V  VS++L+SPL  I+  T LL+    G+  + +  + VE I  ++ 
Sbjct: 375 ESAQRAIRAREELVAVVSHDLKSPLATIVMNTSLLRRKLPGADEAVEVRRPVERIQKAAD 434

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  L+ D+LDLA +D G + +      +  LL +  + +  +  E ++R++   +  + 
Sbjct: 435 RMNRLIRDLLDLAKLDGGHISIQPVPHDVAGLLGDAIELLREEAAEKSLRLEQSVELGVD 494

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             + DR+R+LQ+ + ++ NA+ F+S G  V ++A     +   SV++ G  IPED    +
Sbjct: 495 RALCDRERILQVIANLVGNAIKFTSAGGEVAVRAEPWGREVRLSVRDTGPGIPEDQRARI 554

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           F R+   A     +G GLGLSI ++ + +HGG + + S   EG T
Sbjct: 555 FERYW-QAKETAHKGTGLGLSIAKALVEVHGGRIWVESKVGEGST 598


>gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
           12472]
 gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium
           violaceum ATCC 12472]
          Length = 1229

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 126/237 (53%), Gaps = 11/237 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L++   A   A+  K+ F+ ++S+E+R+P+  I+G   L++ +    LN++Q+ Y +  S
Sbjct: 491 LSQAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQT---GLNARQADYADKAS 547

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +++  LL ++NDILD + V+ G + L      ++ LL +V   ++  + + ++ +    D
Sbjct: 548 SAARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSANVGDKDVEVLFDID 607

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDF--IFSVKNNGSS 729
            +L  ++ AD  RL QI   +  NA+ F+ +G  VI    A RD       FSV++ G  
Sbjct: 608 PELPDWISADSLRLQQILINLSGNAIKFTERGEVVIAARLARRDEAGLRIAFSVRDTGIG 667

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           I  +  + +F  F        RR  G GLGL+I +  + L GG +++  S+EG  ++
Sbjct: 668 IAPEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLTV-ESEEGKGSV 723


>gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 948

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|326775398|ref|ZP_08234663.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326655731|gb|EGE40577.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 697

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 9/229 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +E + + V  V++ELR+PL+NI G+   L+ ++ G L      +V  +   + +L ++++
Sbjct: 466 EEQRKAMVSDVAHELRTPLSNIRGW---LEAAQDG-LADPDPAFVSSLLEEAVLLQHIID 521

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+ DLA  DAG+++L+   +   +LL +V  +   +     + + V       +  AD  
Sbjct: 522 DLQDLAAADAGVLRLHPEPVEARELLGQVAAAHQARAENAGVTLTVAGAAPGPALRADPV 581

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           RL Q  S ++SNA+  + +G  V L+A     + G     V + GS IP +    VF+RF
Sbjct: 582 RLRQAVSNLVSNAVRHTPEGGRVTLRAYACEEEAGTVAVEVADTGSGIPAEDLPHVFDRF 641

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   RR  G GLGL+IV   +  HGG V  +S     +T   R+P
Sbjct: 642 WRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVDAASVVGEGSTFVLRLP 690


>gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 567

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 334 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 390

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 391 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 449

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 450 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 509

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 510 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 561


>gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
 gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++   D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLP 581


>gi|160889665|ref|ZP_02070668.1| hypothetical protein BACUNI_02092 [Bacteroides uniformis ATCC 8492]
 gi|156860657|gb|EDO54088.1| hypothetical protein BACUNI_02092 [Bacteroides uniformis ATCC 8492]
          Length = 585

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E AL E  +   ++  +K++F+ ++S+E+R+PL  I+GF+D+L  S  G+   +Q  Y 
Sbjct: 348 SEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVL--SAGGASEEEQRGYF 405

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +S +LL L+NDILD++ ++A  + L+  +  +  +  +V  S+A      N +  
Sbjct: 406 EIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVAQARRSTN-QFL 464

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGS 728
              + ++     D QRL Q+   +LSNA  F+ +G T+ LK   D      +FSV + G 
Sbjct: 465 FECEREVVEMRTDVQRLQQVVINLLSNADKFTKEG-TITLKLEPDTARNVAVFSVTDTGC 523

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            IP D  K VF RF       Q  G GLGLSI +  +   GG + I  +
Sbjct: 524 GIPLDKQKRVFERFEKLNEYVQ--GTGLGLSICKLTVEKWGGEIWIDPA 570


>gi|332669345|ref|YP_004452353.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
 gi|332338383|gb|AEE44966.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
          Length = 589

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 10/235 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A  +K+ FV  VS+ELR+PLT+++G+ +LL       L  +Q  Y+  I  ++   L 
Sbjct: 355 REAARLKDEFVSLVSHELRTPLTSVLGYLELLLDGT-DELTEEQRSYLTVIERNARRQLR 413

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV D+L  A VDAG   ++   I L D++     S+     +  +   +++       VA
Sbjct: 414 LVGDLLLTAQVDAGTFAISPRPIDLADVVRGSATSLGPVAEQAGV--ALVTSVAPTPVVA 471

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFN 740
           D  RL Q+   ++SNA+ F+  G  V L+ A   D G  +  V++ G  I  D  + +  
Sbjct: 472 DPGRLAQVVDNLVSNAVKFTPSGGEVHLEVAPTPDGGAGVL-VRDTGIGIAPDELQRLTT 530

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSKE 792
           RF   ++A R    GVGLGL+I  + ++ HGG + + S+  EG TT    +P+  
Sbjct: 531 RFFRATSATRRAIPGVGLGLAIARAVVDAHGGRLDVESTLGEG-TTFVVTLPAAP 584


>gi|296448146|ref|ZP_06890045.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296254327|gb|EFH01455.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 899

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 5/227 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDI 627
           K  F+  VS+E+R+PL  IIGF +++   + G L S++  +Y++ I  S   +L+LVND+
Sbjct: 670 KTDFLAKVSHEVRTPLNAIIGFAEVMMEERFGPLGSERYKEYLKDIHTSGLHVLSLVNDL 729

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ ++AG M+L+   I  N ++ E    +  + + + + I++    +L   +AD + L
Sbjct: 730 LDLSKIEAGKMELDVERIDANAMIAECVSIMQPQANRSRVLIRLSLWPRLPRVLADGRSL 789

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-N 745
            QI   +LSNA+ F+  G  VI+ +A  D G  +  VK+ G  + E   ++    F    
Sbjct: 790 RQILLNLLSNAVKFNEAGGQVIVSSALTDAGYVVIRVKDTGIGMSESEIETALEPFRQVG 849

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            H+    G GLGL + ++ I  +    SI+S     T +    P  +
Sbjct: 850 PHKAS--GTGLGLPVTKALIEANRASFSITSRRNEGTLVEVAFPPPQ 894


>gi|315497659|ref|YP_004086463.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
 gi|315415671|gb|ADU12312.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
          Length = 598

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T + EA +  +E K+ F+  +S+ELR+PL  +IGF+D+++    G L  K ++Y + I  
Sbjct: 308 TARQEA-QALNEGKSRFLAGMSHELRTPLNAVIGFSDIMRQQMFGPLTGKYAEYSQLIWE 366

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   +L+LVND+LD++ ++A   +L+       + ++   + I    HE  + +K +   
Sbjct: 367 SGQHVLDLVNDVLDMSKIEASRYELSLERFDAREPVSAALRLILATAHEKGVTVKSVLPP 426

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PED 733
                 AD++ + Q+   +LSNA+ F+ +G T+ L  +      I   + + G  I PED
Sbjct: 427 TPLEVTADKRAIKQMCLNLLSNAVKFTPQGGTITLMLSETGQHSIDIQITDTGVGIAPED 486

Query: 734 MCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + K +   +  +    QR  G GLGLS+V++   LH G ++I  S+ GV T
Sbjct: 487 L-KRLGKPYEQSGPMEQRAMGTGLGLSLVQALAGLHRGRMTI-ESELGVGT 535


>gi|294951307|ref|XP_002786921.1| sensory transduction histidine kinase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239901499|gb|EER18717.1| sensory transduction histidine kinase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 1450

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 116/214 (54%), Gaps = 14/214 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+SF+  V++ELR+PL  +IG ++ L+ ++    N  + ++++ I+  +  LL LVN+I+
Sbjct: 147 KDSFMATVNHELRTPLNGVIGLSESLRMTEP---NPGRKKHLDIINNCAVRLLALVNEIM 203

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSI-------ATKMHENNIRIKVISDGKLGSFV 681
           D+A + A  M+LN+  + +N++  +V   +         K+ ++ + +  I D       
Sbjct: 204 DIAALKAKKMQLNFGMVNVNEICEQVCGEMMEAVDKRGRKIKKDKVDLDFIPDPACPEVE 263

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D++RL  + S +++NA  F+SKGS  ++   +  G  +  + + G  I +D  K +F  
Sbjct: 264 GDKERLHYVMSAMVNNACKFTSKGSVKVITKGKARG-VLIKIVDTGIGIADDNVKRIFTE 322

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           F       + R   G+GLGLS+    INLHGG +
Sbjct: 323 FEQEDDDHENRKFEGLGLGLSVSNEVINLHGGRL 356


>gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 614

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 23/268 (8%)

Query: 543 VNVTDSVRAERALT--------------EKNEALR----KADEIKNSFVQHVSYELRSPL 584
           ++VT+ ++AE+AL               E+  A R    +A  +K+ F+  VS+ELRSPL
Sbjct: 195 LDVTERIQAEKALRQSELMVTEERAQALERERAARIELERASRMKDEFLAIVSHELRSPL 254

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G++ LL+T KL     K  Q +E I  ++     L+ D+LD++ +  G ++L    
Sbjct: 255 NGILGWSRLLRTRKLSP--EKIEQALESIERNAQAQTQLIEDLLDISRIIRGNIRLLVRP 312

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L  ++     ++    +  +I+I    +  +G   AD +RL Q+   +LSNA+ F+ +
Sbjct: 313 TKLIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERLQQVIWNLLSNAVKFTPE 372

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           G  V +   +   +    V + G+ I  +    VF+RF        R   G+GLGL+IV 
Sbjct: 373 GGRVEICLEQVETNVQIQVIDTGTGISPEFLPYVFDRFRQADATTTRNQGGLGLGLAIVR 432

Query: 763 SFINLHGGHVSISSSDEGV-TTINCRIP 789
           + + LH G VS++S  EG   T   ++P
Sbjct: 433 NLVELHNGKVSVASPGEGQGATFTVQLP 460


>gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           CIP 102972]
 gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           CIP 102972]
          Length = 1268

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 130/245 (53%), Gaps = 11/245 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T++++ E+ L E  E   +A+  K+ F+ ++S+ELR+P+  I+G   LL+ ++   LN
Sbjct: 508 DLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILG---LLQIAQNTDLN 564

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+     ++  LL L+NDILD + V+AG M++      L +L++E    +++ + 
Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718
             ++ I    D  + ++ + D  RL QI   +  NA+ F+  G   V ++    NGD   
Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSIQTESHNGDRCV 684

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V + G  + E+  + VF  F        RR  G GLGLSIV+  + L  G V +  
Sbjct: 685 LRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQV-K 743

Query: 777 SDEGV 781
           S++GV
Sbjct: 744 SEQGV 748


>gi|162453632|ref|YP_001615999.1| two-componenthybrid sensor histidine kinase [Sorangium cellulosum
           'So ce 56']
 gi|161164214|emb|CAN95519.1| two-componenthybrid sensor histidine kinase [Sorangium cellulosum
           'So ce 56']
          Length = 692

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASST 618
           EA ++A  ++   +   +++LR+PL++II    LL+ S       +        I  ++ 
Sbjct: 460 EAEQRARRLREEALAIAAHDLRNPLSSIILAASLLERSAPADAGGQPIRNRARQIKRAAE 519

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             + ++ ++LD A ++A  +KL+     +  L+ EV + +A    +  I++  +  G   
Sbjct: 520 RAVEMLGELLDAAIIEAKGLKLDIQPCEVGSLVREVTEMLAPLAEQKRIQLHTLLPGSGL 579

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKS 737
               DR R+LQ+ S ++ NA+ F+++G  + + A R       SV + G+ I PED+ + 
Sbjct: 580 ELSCDRGRMLQVLSNLVGNALKFTAEGREITIGAERQGPHVRLSVSDTGTGIRPEDIPR- 638

Query: 738 VFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+R+     R  R  G GLGL IV+  +  HGG +S+ S     TT +C IP
Sbjct: 639 LFDRYWQG--RAARCAGAGLGLYIVKGIVEAHGGQISVDSELGAGTTFSCTIP 689


>gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
 gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
          Length = 796

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 12/226 (5%)

Query: 560 EALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EA+ KA+     K++F+ ++S+E+R+P+  ++G  +LL +++L   ++ Q + +  I +S
Sbjct: 254 EAVTKAEAASLAKSAFLANMSHEIRTPMNGVLGMAELLMSTEL---DTYQRELIGTIMSS 310

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            T L+ ++NDILD + ++AG   LN     L + +  V   +A +  E ++ + V  D  
Sbjct: 311 GTSLVTIINDILDFSKIEAGKFSLNEEPFNLREGIENVATLMAGRAAEKDLELFVRYDPS 370

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGSSIPE 732
           L   V  D  RL Q+ + ++ NA+ F+ +G  +I      +G   D   SV + G  IP 
Sbjct: 371 LPEGVFTDGGRLRQVITNLVGNAIKFTDEGQVLIDVTGAQSGETVDLRISVTDTGIGIPP 430

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  +++F +F    N       G GLGL+I ++ I L GG + ++S
Sbjct: 431 EKLEAIFEKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIGVTS 476


>gi|332712356|ref|ZP_08432283.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348830|gb|EGJ28443.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 965

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 126/244 (51%), Gaps = 2/244 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R + +L  +N  L +A  +K+ FV  +S+ELR+P+  IIGF+ LL   + GSL  +Q+  
Sbjct: 684 RRDASLKLQNLQLLEAARLKSQFVSTISHELRTPMNAIIGFSQLLLRQRQGSLTHQQADI 743

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  ++  LL L+ D++DL+ ++A  ++L   ++ L+ L+ E          + ++ +
Sbjct: 744 MERIVNNAQHLLTLIKDMIDLSKIEAVCLELTLESLHLDRLIKETINEFRCLAAQKDLGL 803

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + ++ K    + D  RL QI   ++SN + F+  G   ++         + +V++ G  
Sbjct: 804 YIQTNLKNPIVINDSLRLRQILVNLVSNGIKFTEMGRVEVVVKEISTDWLMLTVRDTGIG 863

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I E+  + +F  F        R+  G GLGL+I ES + L  G +++ S     +T + +
Sbjct: 864 IAENDLEHIFEEFQQIDQTTTRKYSGTGLGLAITESLVKLMQGTITVESKLGKGSTFHVK 923

Query: 788 IPSK 791
            P +
Sbjct: 924 FPRR 927


>gi|330963716|gb|EGH63976.1| bacteriophytochrome [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 918

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +G  N +     +
Sbjct: 444 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVGDTNFENRNIRR 499

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 500 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 559

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   S   L    AD +R+ Q+ SK++ NA+ F+ KG  + + A  D  D +F V ++G 
Sbjct: 560 LNCTSAQGL-VIDADPERIFQVLSKLVGNAIKFTPKGGRINIDAVADGNDVLFRVSDDGI 618

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 619 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGSLWADSSLDSGSVFSFTL 677

Query: 789 P 789
           P
Sbjct: 678 P 678


>gi|302343588|ref|YP_003808117.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301640201|gb|ADK85523.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 483

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 157/361 (43%), Gaps = 31/361 (8%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--------PGTHIRNIAATCSRYY 491
           ++ ++ GV V   + R+ L NPA R L + +E  +         P   +    +      
Sbjct: 142 VESMTNGVLVIDTERRVVLMNPALRRLARWDEGEVLGRDLEEALPCPAVAQALSEVLAGQ 201

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            + DG  +   I     +E   LQ T     DS              +  F +VT     
Sbjct: 202 GDQDGQSVSCQITLGLAEEPMHLQVTCSPFLDSRGRL-------VGALAVFDDVT----- 249

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                    ALR+ DE+K+ +V  V++E+ SPL++++     L     G LN +Q Q V 
Sbjct: 250 ---------ALRRLDELKSEYVSTVAHEIASPLSSVLSQLQNLSQGLAGELNERQGQIVR 300

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                   ++NL  D+LDL+ ++AG M      + +  +L E    +  K  +    + +
Sbjct: 301 RARLRIEGIINLSKDLLDLSKIEAGAMGQAEERLAVGPILEEAVDIMRAKAADKAQSLTL 360

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +L      ++ L ++F  ++SNA+ ++ +G  + ++A   +G     V +NG  +P
Sbjct: 361 EMAAELPRVAGVQRELQEVFVNLISNAVRYTPQGGRIDVRATAQDGWVRVDVSDNGFGVP 420

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + +F RF  V +A+     G GLGL IV+  +   GG+V + S     +T +  +P
Sbjct: 421 IEDQEKIFQRFYRVKDANTRNIIGTGLGLPIVKRVVEAMGGNVRLRSKPGQGSTFSVLLP 480

Query: 790 S 790
           +
Sbjct: 481 A 481


>gi|254444049|ref|ZP_05057525.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
 gi|198258357|gb|EDY82665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
          Length = 1318

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 11/232 (4%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+SF+  +S+E+R+PL  +IG   +L+ +   +L+S Q  Y+E I  S   LL +VNDIL
Sbjct: 809  KSSFLAVMSHEIRTPLNGVIGMCSVLRQT---NLDSMQRDYLESIRVSGLSLLEVVNDIL 865

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRL 687
            D + ++ G + L      L DL+  V   +  K +E  + + ++ D ++      D  R+
Sbjct: 866  DYSKIEKGRLSLECILFDLVDLVESVVSLLGLKANEKELDLHLLIDPRIKRLHYGDPTRV 925

Query: 688  LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
             QI   +L NA+ F+  GS  +    K+  D+   +  V + G  I ED  ++VF  F  
Sbjct: 926  RQILYNLLGNAIKFTKLGSVTVSLYPKSGYDSDHLVMEVSDTGVGIEEDKHEAVFEAFAQ 985

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT-TINCRIPSKE 792
            +     R+  G GLGLSI      L GG + + S  DEG T  ++  +P+ E
Sbjct: 986  SDVSDVRKFGGTGLGLSICRQLAGLMGGDIELESRLDEGSTFRVSLSLPAAE 1037


>gi|254443602|ref|ZP_05057078.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257910|gb|EDY82218.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1279

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 133/245 (54%), Gaps = 10/245 (4%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R L    +   ++D++K++F+ ++S+E+R+P+  I+GF+ ++ T K    + ++  + + 
Sbjct: 883  RELERAKKHAEESDQLKSAFLANMSHEIRTPMNAIMGFSSMIVTDKFS--DDERRDFTKI 940

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-IRIKV 671
            I  + T L  L++DILDL+ ++AG +K+      L+ LL+E+  S A ++ E +  R K+
Sbjct: 941  IYNNCTSLATLIDDILDLSAIEAGQIKIAKRAFNLDGLLDELSDSFALQVSEKDPTRFKL 1000

Query: 672  I----SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
            +     + +    V+D  RL QI S ++SNA+ F+ +G   +      +   + F++++ 
Sbjct: 1001 LFTRPPELQSAIVVSDPLRLRQILSNLISNAIKFTQEGHVYVRYEFEKHRPHVRFTIEDT 1060

Query: 727  GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I +    +++ RF  + +      RG GLGL I ++ I L GG +S+ S +   +  
Sbjct: 1061 GIGISQKHLDAIWQRFRKIEDDTNTLFRGTGLGLPITKNLIELLGGEISVESEEGKGSRF 1120

Query: 785  NCRIP 789
               IP
Sbjct: 1121 TFSIP 1125


>gi|331019216|gb|EGH99272.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 775

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++    
Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 495

Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K +     +LG  +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 496 DGNIELKELPHLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ +EG
Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 614

Query: 781 VTTINCR 787
                CR
Sbjct: 615 -----CR 616


>gi|329668012|gb|AEB93960.1| two-component system histidine kinase [Lactobacillus johnsonii DPC
           6026]
          Length = 385

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 133/234 (56%), Gaps = 8/234 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  LLK+S+   LN  Q++Y++     +  
Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQTKYIQIAYDKALQ 201

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +  L  D+ +  T+ +    KL  + + +N +L +V      +  + NI   V++  +  
Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLTPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 261

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
              AD + ++++ + ++SNA+ +    + + L A + N +F+   V+NNG  IP+   + 
Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGRGATEINLIANKVNNEFVELRVENNGEQIPKKSLQK 321

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V ++   +  G GLGL+I +S ++LHGG++   S+ E +T+   ++P
Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGNIKCQSTAE-LTSFIIQLP 374


>gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1]
 gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++   D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLP 581


>gi|254507539|ref|ZP_05119673.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Vibrio parahaemolyticus 16]
 gi|219549609|gb|EED26600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Vibrio parahaemolyticus 16]
          Length = 929

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y+  I  S+T LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LTNSQTDYLNTIEKSATNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
           N++NDILD + ++AG + L        + L EV    AT  HE  + + +  D K+    
Sbjct: 340 NIINDILDFSKLEAGKLALESIPFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ Q+ + ++ N++ F+  G+  I    R    D  +  F V++ G  I E    
Sbjct: 400 VGDSLRIQQVLTNLVGNSIKFTEHGNIDISVEMRSQKEDVVELQFMVRDTGIGISERQQA 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 501


>gi|172036382|ref|YP_001802883.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697836|gb|ACB50817.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 569

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 16/252 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +     +Q +++E 
Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLI-LDGMADDAQEQQEFLEE 364

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILD+A ++AG M L   ++ L +L   V      +    ++  +  
Sbjct: 365 AHKSALHLLNLINDILDIAKIEAGKMDLELGSVELAELFQAVDNFTLPQAQRKHLAFRSK 424

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN------GDFI 720
               L   V   + QRLLQ+   ++SNA+ F+ +GS V    I+K   D+      G   
Sbjct: 425 LPSTLTPIVVYGNYQRLLQVMLNLVSNAIKFTHEGSIVVNAEIVKKKIDHQHQEFPGLVK 484

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  D    +F +FV    +H     G GLGL+I +  I   GG V   S  
Sbjct: 485 VSVTDTGIGVSLDKQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLIQAMGGQVEFYSMG 544

Query: 779 EGV-TTINCRIP 789
           EG+ +T+   +P
Sbjct: 545 EGLGSTVTFTVP 556


>gi|268326254|emb|CBH39842.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1037

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 13/246 (5%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKA----DEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            T +  V     V   + L ++ E L K     D++K +F+    +E+RSPL  I+G+  L
Sbjct: 781  TPVKIVGTMRDVTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASL 840

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+    G LN KQ +YV  I  S++ L  L+  +L++  ++AG  +L+   + + +++N 
Sbjct: 841  LEQ---GELNEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNN 897

Query: 654  VKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILK 711
            V +    +       I  V+ +G       D+Q++  IF  ++SNA+ ++  KG   I+ 
Sbjct: 898  VLERFGPQADAKKQTISAVVPEGT--EVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVV 955

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGG 770
              R  G     V + G  IP++     F R F+++    ++ G+GLGL+IV+ ++ LHGG
Sbjct: 956  EDRKEG-IRVCVADTGIGIPKEQLPRAFERFFMADTSLRRKGGLGLGLAIVKGYVKLHGG 1014

Query: 771  HVSISS 776
             V ++S
Sbjct: 1015 EVWVTS 1020


>gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
 gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
          Length = 1331

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 129/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GGH+++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGHITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 558

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-S 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 441 VIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|167032264|ref|YP_001667495.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166858752|gb|ABY97159.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 917

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   +  +Q  Y+  I  S+
Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLSTIEKSA 331

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   +  + +I    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731
             S + D  RL QI + ++SNA+ F+ +G T++++A       D+     SV++ G  + 
Sbjct: 392 PSSLIGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLDDEHEDHAQLRISVQDTGIGLS 450

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498


>gi|14906039|gb|AAK72489.1| GacS [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 917

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 17/243 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+  EG    I+ 
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL 508

Query: 787 RIP 789
           R+P
Sbjct: 509 RLP 511


>gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
          Length = 646

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 137 AICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 196

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 197 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 253

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 254 YLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVL--HVRCD 311

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 312 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 371

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 372 VDSEPGMGSQFTLRIP 387


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 15/262 (5%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TM+T +        E+ L    +A  ++  IK  F  +VS+ELR+PL  ++G  +LL+  
Sbjct: 247 TMMTVLEAR-----EQELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNM 301

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L  KQ +YV+    S   LL L+ +ILD + +++G  KL+ +   L ++L++    
Sbjct: 302 ---GLTPKQREYVQVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGL 358

Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
           +A +    ++ +  V++     S   D  R+ QI   ++ NA+ F+ +G   +    L+ 
Sbjct: 359 LAGQAQRKDLDLGYVVAKNVPPSLRGDATRIRQILINLMGNAVKFTEQGEVSVEVQLLEK 418

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                  +F VK+ G  IP +  K +F  F        R+  G GLGL+I    ++L GG
Sbjct: 419 TAKKLVLLFEVKDTGIGIPIEFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGG 478

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            + + S   G +     +P +E
Sbjct: 479 DIGVESKFGGGSRFWFTVPLEE 500


>gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 867

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 12/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ++AL E   +   A++ K  F+ ++S+ELR+PL  I+G   L + ++L    
Sbjct: 471 DITERKATQQALMEAKHSAEAANQSKTEFLTNISHELRTPLNGILGMLQLTRETRL---K 527

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q++Y++   +SS +LLN++NDIL++A ++AG + L  +    N++L  + +       
Sbjct: 528 PEQAEYIDTAISSSKVLLNVINDILNIAQIEAGRLTLLDAPFSTNEVLETIYRFFRHSTE 587

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG- 717
              + + + +  G   + V D  R+ QI   +L N++ F+ +G       IL      G 
Sbjct: 588 AKGVELTMDMEPGFPKTLVGDEVRIRQILFNLLGNSVKFTDQGHISVHASILPVTPRPGR 647

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +  +K+ G  IP D    VF  F  V   +  Q +G GLGL IV S +    G +++
Sbjct: 648 VTVLLVIKDTGIGIPSDKIDYVFESFTQVDGTYTRQYQGTGLGLGIVRSLVWSMNGTIAV 707

Query: 775 SSSDEGVTTI 784
            S     TTI
Sbjct: 708 DSETGMGTTI 717


>gi|114571065|ref|YP_757745.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341527|gb|ABI66807.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 597

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 133/269 (49%), Gaps = 16/269 (5%)

Query: 536 AQTMLTFVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           A+ +L F    +S+ RA + L +  EA  +A+  K  F+  +S+E+R+PL  ++G    L
Sbjct: 181 AEAVLIFRPAANSIERAMKRLKDAREAADRANAAKTDFLAQMSHEIRTPLNGVLGMARGL 240

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + + L   +  Q + V  I +S  +LL++VND+LDL+ ++AG ++L    + L  +++  
Sbjct: 241 RDTPL---DEGQVEMVSTICSSGDLLLSVVNDVLDLSKIEAGEIELETVDMSLVQIVDWT 297

Query: 655 KQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712
             +      E  I I+  I  G  G +  D  R+ QI S ++SNA+ F+  G+  I ++ 
Sbjct: 298 VSAFRPACVEKRITIESSIDPGAEGWYRGDPTRVRQILSNLVSNAIKFTQIGTVSISVRC 357

Query: 713 ARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
           +   GD        V + G  +P    +++F  F S A     R   G GLGL I     
Sbjct: 358 STSPGDGTDRVEICVADTGIGVPAHKLQTIFQAF-SQADSSTTRAYGGTGLGLPICRKLA 416

Query: 766 NLHGGHVSISSSD--EGVTTINCRIPSKE 792
            L GG +S+ S      + T+  R+P  E
Sbjct: 417 TLMGGEISVRSRPGCGSIFTVALRMPRTE 445


>gi|83953721|ref|ZP_00962442.1| PAS [Sulfitobacter sp. NAS-14.1]
 gi|83841666|gb|EAP80835.1| PAS [Sulfitobacter sp. NAS-14.1]
          Length = 698

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 171/372 (45%), Gaps = 50/372 (13%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT---HIRNIAATCSRY----YN 492
           I+ L++G  +F    R+ LSN  ++ +++     L PG     +  I     ++    YN
Sbjct: 316 IEALNDGFVMFDAQDRLLLSNSKYKEMYELPSEVLKPGAPFAELLRIGVKSKQFPMGRYN 375

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           E +  +   AI      E ++ +    L    V++ S  PL +   +   V+VT+     
Sbjct: 376 EEEWIERRLAI----HRENRTSETEQHLSGGRVIKASDRPLADGSYVGLRVDVTE----- 426

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL------------- 599
             L+   +A   A + K  F+  +S+ELR+PLT I+G   L + +++             
Sbjct: 427 --LSHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSRNARMLSSSKALLKGYED 484

Query: 600 ---GSLNSKQ---------SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
              G   +K+         S  +  +  S   LL+L+N+ILD+A +++G + +  S   +
Sbjct: 485 GEIGHAEAKRLLDEMYDQLSGLMNRLVQSGEHLLHLINEILDVAKIESGSLVIEPSPCAV 544

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            D+++ V + + T   +  +   V+ +  +    AD+ R  QI   ++ NA+ F+  G  
Sbjct: 545 QDIVDPVIEQLRTLSSKKGLAFDVVQEADM--VFADKVRARQILFNLIGNAIKFTDTGFV 602

Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
            ++   +  GD + F V ++G+ IPE   +S+F  F        RR  G G+GL+I  S 
Sbjct: 603 RLV--VKPVGDVVSFEVHDSGAGIPEAELQSIFEVFYQVDSTATRRAGGTGMGLAISRSL 660

Query: 765 INLHGGHVSISS 776
             + GG +S+SS
Sbjct: 661 AEMQGGSLSVSS 672


>gi|294624628|ref|ZP_06703300.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601063|gb|EFF45128.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 667

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 20/244 (8%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613
           + +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +   Q  Y  +  I
Sbjct: 240 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVI 294

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIR 668
           ++S+     L++D+LDL+++  G ++L   ++   DL+ +V+     Q +A +  +  + 
Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLE 351

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V     L   + D  RL Q+   +LSNA+ F+     + +K  RD+G  + SV ++G 
Sbjct: 352 LHVPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGD 409

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
            I  +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T  
Sbjct: 410 GIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFT 469

Query: 786 CRIP 789
            R+P
Sbjct: 470 VRLP 473


>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1154

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 40/275 (14%)

Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER   E + AL +AD   + K+ F+ ++S+E+R+P+  +IG T LL  +    LN  Q +
Sbjct: 397 ERKTVELDAALTRADAASKAKSEFLANMSHEIRTPMNGVIGMTGLLLET---DLNETQRR 453

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E + +S   LL L+NDILD + +++G ++L      L D L+     +A K  E  + 
Sbjct: 454 YAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLE 513

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------- 717
               +D  +  + + D  R+ QI + ++ NA+ F+ +G  V+  + +++G          
Sbjct: 514 FICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRRQETGDKS 573

Query: 718 ------------------DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
                             +F    FSV++ G  IPED    +F  F        R+  G 
Sbjct: 574 QETGDKSQETGDKSQESEEFCMLRFSVRDTGIGIPEDKIGLLFQSFSQVDASVTRKFGGT 633

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I      L GG V + S +   TT    +P
Sbjct: 634 GLGLAISRQLAELMGGEVGVESIEGQGTTFWFTVP 668


>gi|224537976|ref|ZP_03678515.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520413|gb|EEF89518.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 806

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 139/265 (52%), Gaps = 28/265 (10%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G +E+L    + Y I PL   +  L                +K E L   D +K++F+ +
Sbjct: 556 GVIEML---CINYDITPLKETEQKLIIAR------------DKAEEL---DRLKSAFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL +I+GF+ LL  +       ++ +Y++ +  ++ +LL LV+DILDL+ +++
Sbjct: 598 MSHEIRTPLNSIVGFSSLLAET---DDREERQEYIKIVETNNELLLQLVSDILDLSKIES 654

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           G      S + +N+   ++ +S+  K+ E  + +  K + D  +     D+ R +Q+ + 
Sbjct: 655 GTFDFVRSDLDVNESCMKIIKSMEMKVPETVDLVFEKYMPDCHI---YTDKNRFMQVITN 711

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            ++NA+ F+ +G+  +        +  F V++ G  IP++   S+F RFV      Q  G
Sbjct: 712 FINNALKFTKQGTIALGYEQTAPHEIKFYVRDTGFGIPKEKIDSIFERFVKLNTFVQ--G 769

Query: 754 VGLGLSIVESFINLHGGHVSISSSD 778
            GLGLSI +S ++  GG + + S++
Sbjct: 770 TGLGLSICKSLVSQMGGKIGVESTE 794


>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1547

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 16/253 (6%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+ V+ +  L         A   K+ F+ ++S+E+R+P+  +IG T LL  +    LN
Sbjct: 817  DITERVQDQERLRIATMQADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLET---DLN 873

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q +Y E + +S   LL L+NDILD + +++G ++L      L D L+     +A K  
Sbjct: 874  ETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAE 933

Query: 664  ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----- 717
            E  +     +D  +  + + D  R+ QI + ++ NA+ F+ +G  V+  + +++G     
Sbjct: 934  EKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRSQE 993

Query: 718  --DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              +F    FSV++ G  IP D    +F  F        R+  G GLGL+I +    + GG
Sbjct: 994  SQEFCMLHFSVRDTGIGIPADKVGDLFQSFSQVDASITRKFGGTGLGLAISKQLAEMMGG 1053

Query: 771  HVSISSSDEGVTT 783
             V + S +   TT
Sbjct: 1054 DVGVDSVEGQGTT 1066


>gi|282898637|ref|ZP_06306625.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
 gi|281196505|gb|EFA71414.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
          Length = 623

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L + N  L + +++KN F+ + S+E+R+PLT+IIGFT+LL      +   +  +Y++ 
Sbjct: 223 QSLLQFNYNLERKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYEAERERHQEYLQI 282

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LL+L+NDILDL+ ++A  +++ +    +  L   V   +  K  +  +++++ 
Sbjct: 283 IQSSGKHLLSLINDILDLSKIEANQLEVQWEVANIPSLCKSVLALVKEKAGDKGLKLQLE 342

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +  + + + D  RL Q+   +L NA+ F++ GS V L+    +    F+V + G  I +
Sbjct: 343 INEDVNTLLVDPLRLKQMLLNLLFNAIKFTNVGS-VGLRVVLKDSWLRFTVWDTGVGISQ 401

Query: 733 DMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +    +F  +       N    +  G GLGL + +    +HGG + + S
Sbjct: 402 EDLSLLFRPYTQLVNTINTQLDKNHGTGLGLIVTKQLAEIHGGSIEVRS 450


>gi|83945039|ref|ZP_00957405.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851821|gb|EAP89676.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 614

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 133/267 (49%), Gaps = 13/267 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +E+S   L +  T+    +V++  R ERA  E +EA +     K+ F   V++ELR+PL+
Sbjct: 86  IEWSETTLADGGTIAVGRDVSEERR-ERA--EASEAAQG----KSVFFASVTHELRTPLS 138

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             +G   LLK S    L+  Q+ Y+E + +S+   LNL++DILDL+ ++AG + L    +
Sbjct: 139 GALGAAALLKDS---GLHPDQAAYLEAVRSSAQHALNLIDDILDLSRLEAGRLTLRAEPV 195

Query: 646 VLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L  L+ +  + +AT+  E  + +   IS        AD  RL QI   +  NA+ F+  
Sbjct: 196 DLRALIEDACEILATRAAEKGLALAHAISSDVPAEIRADPARLRQILFNLGGNAVKFTET 255

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVES 763
           G  VI++A+  +G+     K+ G  I +    ++F  F    A      G GLGL++V+ 
Sbjct: 256 GG-VIVQASYHDGELSLIFKDTGPGISKTDQSTLFKHFERGAAEHNATPGAGLGLAMVKR 314

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
                 G V +SS      T   R P+
Sbjct: 315 LAEAMEGEVGVSSEPGQGATFWTRFPA 341


>gi|254227454|ref|ZP_04920886.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262396281|ref|YP_003288134.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|151940066|gb|EDN58892.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262339875|gb|ACY53669.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 631

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 147/286 (51%), Gaps = 28/286 (9%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM---LTFVNVTDSVRAER-------------ALTE 557
           L   L+LLS +V ++S   +P+  T+     F  V  SV AE+              L E
Sbjct: 175 LVNPLQLLSGAVSDFSGGKVPSKVTLPKRWCFDEV--SVLAEKYNRSVEKVREHQTELEE 232

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +    A+  K+ F+  +S+E+R+P+  IIG   LL  +KL   + +Q ++VE I +SS
Sbjct: 233 ERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLGDTKL---DPQQKEFVEIIDSSS 289

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ +++DILD + V+AG ++L   +  L  +L++V      K  + N+++    D  L
Sbjct: 290 HSLMTIIDDILDFSKVEAGKVELENVSYDLRRILDDVISLHTVKAKQKNLQLLSDIDPHL 349

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPE 732
            + V  D  RL Q+ + +LSNA+ F+ +G   +L    +   D     F V ++G  I +
Sbjct: 350 PAEVQGDAARLKQVLNNLLSNAIKFTDRGHVKLLVELTRQEHDVAMIRFRVVDSGIGIAK 409

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +  +++F RF        R+  G GLGL+I    +NL GG + ++S
Sbjct: 410 ENQQAIFERFQQADGSTTRKYGGTGLGLAIGAQLVNLMGGEIQLTS 455


>gi|255015778|ref|ZP_05287904.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|256841727|ref|ZP_05547233.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736621|gb|EEU49949.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 752

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 133/243 (54%), Gaps = 12/243 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ L +K E + +++ +K++F+ ++S+E+R+PL  I+GF++LL  +   + + +  ++
Sbjct: 515 KMEQELRDK-EKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT---NPSEETKEF 570

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  ++ +LL LVNDILDL+ ++AG M   YS   ++ L   + Q+  +++ +     
Sbjct: 571 CEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLY 630

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             I +     + +++ RL Q+ +  L+NA  F+ +GS  +    R++G + F VK+ G  
Sbjct: 631 CEIPEQDCVIY-SEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKG 688

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TIN 785
           I       VF RF       Q  G GLGLSI ++ + NLHG     S   +G T   TI 
Sbjct: 689 IERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILDNLHGKIGVESEEGKGSTFWFTIP 746

Query: 786 CRI 788
           C +
Sbjct: 747 CAV 749


>gi|218528525|ref|YP_002419341.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218520828|gb|ACK81413.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 786

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 9/244 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQY 609
           AER L +K  A   A++ K+ F+ ++S+ELR+PL  I+GF +L+++   GSL S + + Y
Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S T LL++++DIL ++ ++A  +KL    I L   L      +A +    ++ I
Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALTAALTLVAKEAASKSVSI 626

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +   G L   +AD + L QI   I+ NA+ F+ +   V L+    NG     + + G  
Sbjct: 627 DLELAGTL-HVLADERALQQILLNIIQNAVKFTPERGRVALRGRSCNGFVHLFIGDTGIG 685

Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785
           IP+     +   F +  +N  R   +G GLGL+I  S   LHGG + I  S+EG+ T + 
Sbjct: 686 IPKTAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGIGTLVL 743

Query: 786 CRIP 789
            R+P
Sbjct: 744 VRLP 747


>gi|154251573|ref|YP_001412397.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155523|gb|ABS62740.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 502

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 13/238 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+ER L+ ++EA  +A   KN F+  +S+ELR+PL  IIGF++++     G +   Q +Y
Sbjct: 246 RSERLLS-RSEAANRA---KNDFLAIMSHELRTPLNAIIGFSEIISNQMFGPVG--QPKY 299

Query: 610 VEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           V+Y   I +S   LL+++NDILD++  +AG ++L    I   + LN   +    +  E  
Sbjct: 300 VDYAADIRSSGAHLLSIINDILDISKAEAGKLQLEEEPIDPVEALNSTMRMFRQRASELG 359

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKN 725
           + +       +   +AD +   Q+   + SNA+ F+ +   V ++   +  GD + +V++
Sbjct: 360 VELSFRVRDDIPWIIADPRLFNQVAINLTSNALKFTPENGEVSVELGLNPAGDMVLAVRD 419

Query: 726 NGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780
            G  I       +F  FV   +A    ++G GLGL +V   +NLHGG + + S  DEG
Sbjct: 420 TGIGIKAADTTRIFEPFVQVEDAMSRTQQGTGLGLPLVRKIMNLHGGSIELESVVDEG 477


>gi|304321015|ref|YP_003854658.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299917|gb|ADM09516.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 517

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 138/259 (53%), Gaps = 16/259 (6%)

Query: 543 VNVTDSVRA--ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKL 599
           V++T ++RA  +R    ++EA   A++ K++F+ + S+E+R+PL  I+G T+ +LK    
Sbjct: 109 VDIT-AIRANEQRLRLARSEA-EAANKTKSAFLANTSHEIRTPLNGILGLTEHVLKL--- 163

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L ++  Q++  I  + T LL L+NDILDL+ ++AG  +L      L++ + +V++  +
Sbjct: 164 -DLPTEARQHLNTIHDAGTTLLTLLNDILDLSKIEAGAFELAPDEKALSETVGKVERLWS 222

Query: 660 TKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
               +  + +  VI  G     +AD  RL Q  S ++SNA+ F+ +GS  I + A++   
Sbjct: 223 GPAKQKGLSLDVVIGPGVPEKVIADHHRLYQCLSNLVSNAIKFTEEGSVHIRVDASKPKA 282

Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  +V + G  I +D+   +F  F        R   G GLGLSIV+  ++L GG V
Sbjct: 283 GQSVVTVAVSDTGPGISDDIKTQLFKPFTQADSSTSRTYGGTGLGLSIVQGLMDLMGGSV 342

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S     TT   R+P K
Sbjct: 343 DLESKVGVGTTFRVRLPVK 361


>gi|67924970|ref|ZP_00518357.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67853183|gb|EAM48555.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 568

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 16/252 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +     +Q +++E 
Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLI-LDGMADDAEEQQEFLEE 364

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILD+A ++AG M L    + L +L   V      +    ++  +  
Sbjct: 365 AHKSALHLLNLINDILDIAKIEAGKMDLELGAVELAELFQAVDNFTLPQAQRKHLEFRSK 424

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI---- 720
               L   V   + QRLLQ+   ++SNA+ F+ +GS V+       K    N +F     
Sbjct: 425 LPSTLTPIVVYGNYQRLLQVMLNLVSNAIKFTHEGSIVVNAEIVKKKIHHQNQEFPGHVK 484

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  D    +F +FV    +H     G GLGL+I +  +   GG V   S  
Sbjct: 485 VSVTDTGIGVSLDKQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLVEAMGGQVEFYSMG 544

Query: 779 EGV-TTINCRIP 789
           EG+ +T+   +P
Sbjct: 545 EGLGSTVTFTVP 556


>gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 571

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 338 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 453

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 454 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|229029709|ref|ZP_04185782.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271]
 gi|228731597|gb|EEL82506.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271]
          Length = 444

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVE 611
            +L   +  + +A+++KN F+  VS+E+R+PLT I G+++ LKT   L     KQ   + 
Sbjct: 212 HSLNHMSNKIEQAEQMKNEFIASVSHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGI- 270

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  ++ IK
Sbjct: 271 -ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIK 329

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I   +L   + DR +L Q+F  I+ NA+ +S K   V ++A ++ G  +  VK+ G  I
Sbjct: 330 TIERIEL---MGDRNKLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDEGVGI 386

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++    +   F   N H     G GLGL+IV+  + LHGG +S  S +   TTI  ++P
Sbjct: 387 AKEHLPYIEQSFYQINNH---ATGAGLGLAIVKKMVELHGGTLSFISKEGIGTTILIKLP 443


>gi|21702685|gb|AAM76053.1| two-component sensor kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 17/243 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+  EG    I+ 
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL 508

Query: 787 RIP 789
           R+P
Sbjct: 509 RLP 511


>gi|16329398|ref|NP_440126.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1651879|dbj|BAA16806.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 834

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 138/269 (51%), Gaps = 35/269 (13%)

Query: 547 DSVRAERALTEKNEALRK------ADEI-------KNSFVQHVSYELRSPLTNIIGFTDL 593
           +  + E+ L E NE+L+K      A EI       K++FV ++S+ELRSPL  IIGF+ L
Sbjct: 330 ERAQREKILIEYNESLQKQVDLVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQL 389

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +  +K  +L  +Q +    I  S   LLNL+N+ILD + ++AG   LN     L  LL++
Sbjct: 390 MLRTK--NLPMEQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDD 447

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++  +  K     I +  I D  L  +V  D  +L QI   +LSNA+ F+++G  V+   
Sbjct: 448 LEDMLHLKAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSN 507

Query: 713 ARD----------------NGDFI-FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGV 754
            R+                N  ++ F++K+ G  I E     +F  F  + + R  + G 
Sbjct: 508 FRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQEGT 567

Query: 755 GLGLSIVESFINLHGGHVSISS-SDEGVT 782
           GLGL+I   FI L GG +++SS  D+G T
Sbjct: 568 GLGLAITRQFIKLMGGDINVSSVVDQGTT 596


>gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 594

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 9/243 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+    RK D+++N F+ +VS+ELR+P++ + G+++ +    +   + ++ +    
Sbjct: 357 RDMTEE----RKLDKLRNDFIANVSHELRTPISMMQGYSEAI-VDDIAGTDEEKKEMASV 411

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   S  +  LVN++LDLA ++AG ++L      +N  L  + +       E  I ++  
Sbjct: 412 IYDESLRMGRLVNELLDLARMEAGHIQLTMEETEVNSYLQRIIRKFQGLAKEKEISLEHD 471

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFIFSVKNNGSSIP 731
              K      D  R+ Q+ + ++ NA+  + + G   +L+ + + G FI  V+++GS IP
Sbjct: 472 LQSKGVPIQIDPDRIEQVMTNLIDNAIRHTPQNGEVKVLERSDERGLFI-EVRDSGSGIP 530

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+    VF RF     A    R G GLGL+I ++ I  H GH+++ S     TT +  IP
Sbjct: 531 EEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIIEAHKGHITVQSKTGHGTTFSIFIP 590

Query: 790 SKE 792
             E
Sbjct: 591 RNE 593


>gi|254457763|ref|ZP_05071191.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
 gi|207086555|gb|EDZ63839.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
          Length = 766

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 62/346 (17%)

Query: 461 PA--FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           PA  F+ LWKT  N+      I+N   +   YY +S        I+   D          
Sbjct: 325 PAELFKELWKTIRNKKIFKATIKNCKKSGEAYYVDS-------VIVPMLD---------- 367

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHV 576
             +++ ++EY                   +VR E    +  ++EAL  A++ K+ F+ ++
Sbjct: 368 --VNNEIVEYL------------------AVRYEVTELINSRDEALM-AEKAKDEFLSNM 406

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL  I GF+ LLK       + KQS+Y+E+I  SS+ L+ L+NDILDL+ + +G
Sbjct: 407 SHELRTPLNAINGFSSLLKRQ---IKDEKQSKYIEHILESSSQLIGLINDILDLSKLQSG 463

Query: 637 IMKLNYSTIV----LNDLLNEVKQSIATK----MHENNIRIKVISDGKLGSFVADRQRLL 688
              L+Y        +  L+     +I T     + + +  +K++++G       D  R+ 
Sbjct: 464 KFILDYHRFEPYSNIYSLVERFSPNIETASLNLVLDLDDSLKIVANG-------DWLRIS 516

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           QI + +LSNA+ F+  G  V L A  ++ +    V +NG  I +++ + +F  F      
Sbjct: 517 QIITNLLSNAIKFTPAGGEVRLSANHNDDNLRIIVSDNGLGISKEVQEKIFMPFEQADSS 576

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             R+  G GLGLSIV + +      + + S D   +T    IP KE
Sbjct: 577 TTRKFGGTGLGLSIVSNLLKQMDAQIKLESEDGNGSTFELNIPIKE 622


>gi|254412478|ref|ZP_05026252.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180788|gb|EDX75778.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1082

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 25/264 (9%)

Query: 535 NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + QT L  V  +++D  + E AL    +   +A+  K+ F+ ++S+ELR+PL  IIGF  
Sbjct: 569 DEQTCLIAVSQDISDRKQVEFALQRAKDTAEQANRAKSQFLSNMSHELRTPLNAIIGFAQ 628

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL   +  SL  +   ++  I  S   LL+L+N++L L+ V+AG +KLN  +  L  +L 
Sbjct: 629 LL--GRDSSLTQEHHDHIGIICRSGEHLLSLINNVLQLSKVEAGQVKLNCYSFDLYGMLQ 686

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +++    +     +++ V  D  L  +V  D  +L Q+   +++NA+ F+S+G  V L+
Sbjct: 687 VLEEMFKLQAENKGLQLVVDYDEALPRYVETDEGKLRQVLINLVNNAIKFTSQGG-VTLR 745

Query: 712 AARDNGD------------------FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR 752
                G+                    F +++ G  I  +  +S+F  FV + A R    
Sbjct: 746 VKAVQGEMGESTRHPTFNTLPIPQKLRFEIEDTGLGIASEEIESLFEAFVQTEAGRKSLE 805

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL I + F+ L GG + +SS
Sbjct: 806 GTGLGLPISQQFVRLMGGEIHVSS 829


>gi|121997120|ref|YP_001001907.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588525|gb|ABM61105.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 639

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 158/353 (44%), Gaps = 29/353 (8%)

Query: 453 DGRIKLSNPAFRSLWKTEENRL--SP------GTHIRNIAATCSRYYNESDGWDLFAAII 504
           D R+   N AF +L   E   L  SP       +  R  A T  R +    G     A+I
Sbjct: 157 DDRLVYCNAAFEALLGYEAGELVGSPFHEQVAPSRYRTSARTGMRRFRVCGG----GAVI 212

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
               D+R  ++       +  LE S+ PL         V V   +   RAL    +   +
Sbjct: 213 ----DQRTEIEALHRDGHEVPLELSVSPL-QLDGRWHAVGVMRDISERRALEVDRQ---R 264

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  +N F+  +S++LR+PL  I+GFTDLL  S+   L+++Q  +V    ++S  LL L+
Sbjct: 265 AEADRNIFLAAISHDLRTPLNAIVGFTDLLARSE---LDTEQRHHVGLCRSASQTLLGLI 321

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           + +L+L+ ++AG ++L      L   L      +     E  + +    +  +  +V  D
Sbjct: 322 DTVLELSRLEAGRVELRDERFNLPAFLTTQIGLLQPMAEEKGLSLIWSLEPDMPGWVRGD 381

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R  Q+   ++SNA+ F+  GS  +  A    G  +F+V + G  IPE     +F+ F 
Sbjct: 382 PVRFGQVLYNLVSNALKFTETGSIRVDGARSTCGRLMFTVADTGPGIPEADQGRIFDAFC 441

Query: 744 SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT---INCRIPSKE 792
                  ++ G GLGL I +  + L GG + + S+  GV T       +PS E
Sbjct: 442 QGGPVLARKEGSGLGLKICQELVRLMGGTIQLVST-PGVGTTFRFTVTLPSAE 493


>gi|254474100|ref|ZP_05087492.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
 gi|211956796|gb|EEA92004.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
          Length = 867

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 10/231 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R++T   +A   A++ K  F+  VS+ELR+PL  IIG  DL++ +K   L+ +Q    + 
Sbjct: 183 RSMTAAQQAAEAANKAKTQFLTAVSHELRTPLNAIIGMGDLIQDTK---LDPEQRDMAKT 239

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S + LL+++N ILD + +++G M +N +   +N +L EV Q +  +     + I   
Sbjct: 240 IQYSGSSLLSMINGILDFSRIESGRMIVNRTVFDMNSILREVTQIVQGQARGKGLIISRY 299

Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NG---DFIFSVKNNG 727
            D KL  F V D + + ++   I  NA+ F+ +GS  I    ++ NG     +  VK+ G
Sbjct: 300 VDSKLPPFLVGDARHIREVLLNIAGNAVKFTEEGSVSISATCKEMNGGKVSLLLEVKDTG 359

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I ED    +F RF         R  G GLGLSIV   +   GG V +SS
Sbjct: 360 IGISEDAQGRIFERFTQADESIVDRFGGTGLGLSIVREVVRAMGGEVKVSS 410


>gi|120603530|ref|YP_967930.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris DP4]
 gi|120563759|gb|ABM29503.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris DP4]
          Length = 1535

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 141/270 (52%), Gaps = 15/270 (5%)

Query: 532  PLPNAQ-TMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            PLP+   T   F+    ++TD+V A  ++ E ++   +A+  K+ F+ +VS+ELR+PL  
Sbjct: 1110 PLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNG 1169

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
             +G   +L+  +L SL+ +Q QYV     S   L+ L++DILDL+ ++AG + +      
Sbjct: 1170 ALG---MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCD 1226

Query: 647  LNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            + +L++EV  + +       I ++  I+ G       D  RL Q    ++ NA+ F+ KG
Sbjct: 1227 IKELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKG 1286

Query: 706  ST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
               V    A   GD I    +V++ G  IPED  +S+F  F  +  ++  +  G+GLGL 
Sbjct: 1287 GVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLG 1346

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIP 789
            IV   + L GG + + S+    T ++  IP
Sbjct: 1347 IVCRLMELFGGSIEVESAPNMGTAMHFAIP 1376


>gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 652

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 14/247 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER   EK +A   A   K+ F+ ++S+E+R+PL  I+G   L+++    +   KQ +YV 
Sbjct: 254 ERVEHEKAKA-ETASRTKSEFLANMSHEIRTPLNGIMGMLQLMESE---TQTPKQGEYVN 309

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRI 669
               +S  L N+++DILDLA V+AG + L        D L  V +   + ++    N+++
Sbjct: 310 AAMQASKRLNNVLSDILDLARVEAGKLNLYNKEFNPADELKHVFELFEVTSRHSGVNLKL 369

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVK 724
           K+  +  L +   D  RL QI + I+ NA+ F+ +G  +I      ++   N   +F+V+
Sbjct: 370 KLPPELPL-TVTGDPARLQQILTNIVGNALKFTHEGHVLITAQLLPRSTPGNCHILFTVE 428

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I +D    +F  F   S  +  Q +G GLGLSI +    L GG +++ S+ E  T
Sbjct: 429 DTGVGIADDKMNLLFQSFTQASEGYTRQYQGAGLGLSICKRLTELMGGTIAVESNVEQGT 488

Query: 783 TINCRIP 789
           T    IP
Sbjct: 489 TFYISIP 495


>gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37]
 gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 968

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 139/246 (56%), Gaps = 15/246 (6%)

Query: 541 TFVNVTDSVRA--ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +FV +  S+R   ++AL EK  A+ KA + K+ F+  +S+E+R+P+  ++G T+L+  ++
Sbjct: 410 SFVFMEASIRKNIQQALHEKEIAV-KASQAKSEFLATMSHEIRTPMNGVLGMTELVLETE 468

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L   +S+Q +++E I +S   LL+++NDILD + ++AG ++L+   + L +L+  +  S+
Sbjct: 469 L---SSEQRRFMEMIKSSGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQELIKHLVTSL 525

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAA 713
           +    +  +++      ++ ++V  DR RL Q+ + ++SNA+ F+ +G    S VI + +
Sbjct: 526 SPLAKKKGLQLNYNLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQRGEVLVSAVIFEQS 585

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770
                    V+++G  I  +    +F  F S A     R   G GLGL+I +  I + GG
Sbjct: 586 ATALSLQIRVRDSGIGIAPENQDKIFESF-SQADSSTTRNYGGTGLGLAISKQLIEMMGG 644

Query: 771 HVSISS 776
            +  SS
Sbjct: 645 SIGFSS 650


>gi|83644997|ref|YP_433432.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83633040|gb|ABC29007.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 905

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+ EA R    IK+ F+  +S+ELR+PLT I G   LL      +   KQ+Q +  
Sbjct: 667 RDVTERAEAER----IKDEFISTISHELRTPLTAINGSLALLDAKVAMAAPDKQAQMIGI 722

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670
              ++  LLNLVN ILDL  + +G M L  S   L  L+++V        H  ++   ++
Sbjct: 723 ARRNTDRLLNLVNAILDLKKMASGEMTLQLSHFNLAQLVSDVLALNQGLAHNADVSFSLQ 782

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           + SD  +    AD +RL Q+ + ++SNA  FS   + +++    ++     SV + G  +
Sbjct: 783 IPSDCVI-VVEADEERLTQVLTNLISNAAKFSPPHTEIVVSVTLEDSIARVSVTDKGPGV 841

Query: 731 PEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +    +F RF    +++   + G GLGL+I ++ I  HGG +   ++  G  T    +
Sbjct: 842 PPEFLNRIFGRFAQADSSNTRNKSGTGLGLNISKAIIERHGGKIGFHNNPGGGCTFYFEL 901

Query: 789 PS 790
           P+
Sbjct: 902 PA 903


>gi|330894540|gb|EGH27201.1| PAS protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 1037

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 133/255 (52%), Gaps = 11/255 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +V++T+  + E+ L +      +A+E K+ F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 521 WVDITERKQLEQQLQKAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 580

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++  SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L   V +  + +
Sbjct: 581 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 639

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             E ++ +++  S+   G +  D  RL Q+   +L NA+ F+ +GS V+   A D+   +
Sbjct: 640 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVVALDDSSRV 699

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +++++G  I  +  + +F  F      + AH G   G GLGLSI    + L  G +S+
Sbjct: 700 RIAIQDSGEGIEPERQQKIFQPFTQASDDTAAHYG---GGGLGLSITRQLVELMKGDISL 756

Query: 775 SSSDEGVTTINCRIP 789
            S     T +N  +P
Sbjct: 757 YSEPGEGTLVNIDLP 771


>gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
 gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
          Length = 567

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 334 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 390

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 391 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 449

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 450 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 509

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 510 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 561


>gi|6273355|gb|AAF06332.1|AF192795_1 two component histidine sensor kinase GacS [Pseudomonas
           chlororaphis]
 gi|88604817|gb|ABD46754.1| two-component histidine kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 17/243 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+  EG    I+ 
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL 508

Query: 787 RIP 789
           R+P
Sbjct: 509 RLP 511


>gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
 gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
          Length = 740

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K  F  ++S+ELR+PL  I+GF ++L        + K  +Y+ ++  SS  LLNL+
Sbjct: 371 AQKAKEEFFSNMSHELRTPLNAILGFLNILNKQ---ISDKKHLEYLRHVGTSSKQLLNLI 427

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           NDILDLA +  G   ++       + L +  Q     + + NI +K  IS    G F+ D
Sbjct: 428 NDILDLAKIKTGEFTVDAHEFNAYEELKDYAQQFEGMLIDKNISLKSHISHDLKGVFIGD 487

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R+ QI   +LSNA+ F+  G T+ L        F   V++ G  +  D+   +F  FV
Sbjct: 488 LFRISQIILNLLSNAIKFTPDGGTISLYIDYKEEKFSIVVQDTGIGMSPDVQDKIFKPFV 547

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  R+  G GLGLSI +  I L  G + + S +   +T   +IP
Sbjct: 548 QADGSTTRKYGGTGLGLSITQKLIELMNGKLILESQEGKGSTFKVKIP 595


>gi|153806751|ref|ZP_01959419.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
 gi|149131428|gb|EDM22634.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
          Length = 902

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 128/246 (52%), Gaps = 7/246 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    +R L    E    +D++K++F+ ++S+E+R+PL  I+GF+ L+  S   +  
Sbjct: 488 DITELEMIKRELQSSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSQLIAES---NDE 544

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y   + +++  LL L+N+ILDL+ +++GI++       L++L  EV  +   +M 
Sbjct: 545 EERKTYYGIVESNNGRLLELINEILDLSKIESGIIEFTIGPTSLHNLCREVHDAHIFRMP 604

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
                +   SD  L     D+ R+ Q+ S ++ NA  F+ +GS +     R     +F V
Sbjct: 605 VGVSLVHEPSDESL-MIETDKNRVFQVISNLIGNAAKFTKEGS-ISYGYKRVGDQIVFHV 662

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G+ I  +    VF RF    +  Q  G GLGLSI +S +   GG ++++S     TT
Sbjct: 663 TDTGTGIEPEKVGRVFERFAKLNNHAQ--GTGLGLSICKSIVERLGGKITVNSEFGVGTT 720

Query: 784 INCRIP 789
            N  +P
Sbjct: 721 FNFTLP 726


>gi|50120141|ref|YP_049308.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium atrosepticum SCRI1043]
 gi|49610667|emb|CAG74112.1| two-component system sensor protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 951

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   ++V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 438 AICVLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 497

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL    ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +
Sbjct: 498 ---SLPKDANRLVVAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSN 554

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + +  + +   I+     S   D  RL Q+ S +LSNA+ F+  G  +     RD 
Sbjct: 555 YLPLVVKKRLTLYCFIAPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTGCIIFEVGCRD- 613

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I
Sbjct: 614 GYLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITI 673

Query: 775 SSSDEGVTTINCRIP 789
            S     +    RIP
Sbjct: 674 ESEPGLGSLFGVRIP 688


>gi|163846840|ref|YP_001634884.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524660|ref|YP_002569131.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163668129|gb|ABY34495.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448539|gb|ACM52805.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 479

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 116/214 (54%), Gaps = 7/214 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGS---LNSKQSQYVEYISASSTILLNLV 624
           K++F+  +S+ELR+PL  IIGF T +L+  ++     ++ +  Q +  I  S   LL L+
Sbjct: 245 KSNFMATMSHELRTPLNIIIGFSTAMLEHPEMYGDVRIDEQVLQDIAEIRRSGQHLLGLI 304

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDLA V+AG ++LN + + L  LL E  ++    +++  I+++      L +  AD 
Sbjct: 305 NDILDLAKVEAGKLELNKTNLALGPLLEETLRTAQALINDRPIQLRREYREPLPTVFADE 364

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
            R+ Q+   ++SNA  F+  G  + + A  D  + +  V++ G  I     + +F +F  
Sbjct: 365 VRVRQVLLNLVSNACKFTHAGE-IAVGARVDTNEIVLWVRDTGIGIAPADQERIFQQFEQ 423

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + NA   Q  G GLGLSI    + LHGG + + S
Sbjct: 424 IENADTRQHAGTGLGLSICRWLVELHGGRMWVES 457


>gi|159184266|ref|NP_353375.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
 gi|159139593|gb|AAK86160.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
          Length = 746

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 11/254 (4%)

Query: 536 AQTMLTFVNVTDSVRAER-ALTEKNEA-LR--KADEIKNSFVQHVSYELRSPLTNIIGFT 591
           A + L   ++   V  ER AL E+ +A LR  KAD  K   +  VS+E+R PL+ ++G  
Sbjct: 199 ASSRLMISSIARDVTEERLALAEREDARLRAEKADAEKARLLATVSHEIRLPLSGMLGMN 258

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  +KL   N +Q  Y++ +  S   L+ LV D+LD +T++AG  +LN     L  L+
Sbjct: 259 HLLSQTKL---NQEQRNYLDGMKQSGQSLVQLVEDLLDYSTMEAGRFRLNPRAENLRRLI 315

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             + + +A + HE  I I       +  ++  D  RL Q+   ++ NA+ F+  G  VI 
Sbjct: 316 ESIVEMLAHRAHEKGIEIASFVTPDVPDYLDFDPARLRQVLFNLIGNAVKFTQVGGVVI- 374

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
           +A   +G+   +V++ G  + E     +F  F       QR  G GLGL+I    +   G
Sbjct: 375 RARMVDGELQITVEDTGPGMSEAEQARIFGEFEQAGPLSQRSAGTGLGLAISARIVREFG 434

Query: 770 GHVSISS-SDEGVT 782
           G++++SS   EG T
Sbjct: 435 GNLTVSSRRGEGST 448


>gi|42524956|ref|NP_970336.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39577167|emb|CAE80990.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 529

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 115/211 (54%), Gaps = 9/211 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PL +IIG TD L  +    L+++Q+ +VE +  ++  L+ ++NDILDL+
Sbjct: 148 FLANMSHEIRTPLNSIIGITDTLAET---PLDNQQASFVEILQRANHQLMTIINDILDLS 204

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQI 690
            V+AG M+L      L  LL+E++  +  +  E  +++ +  D  +   FV D  RL Q+
Sbjct: 205 KVEAGEMELRPLPFNLQRLLDELEAVLGFRAKEKGLKLSLAIDPDVEEYFVGDADRLRQV 264

Query: 691 FSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
              +L+N++ F++ G     V +      G+ +F V + G  I +   K +F  F     
Sbjct: 265 LMNLLNNSLKFTNNGEISLQVSVNRTVHKGNLLFCVTDTGIGISKQKFKDIFQPFTQADT 324

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              R+  G GLGLSI ++ + +  GH+   S
Sbjct: 325 TTTRKYGGTGLGLSITKNIVQMMNGHIWFES 355


>gi|269839401|ref|YP_003324093.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791131|gb|ACZ43271.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 709

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 143/276 (51%), Gaps = 21/276 (7%)

Query: 526 LEYSIIPLPNAQ-TMLTFVNVTDSVRAERAL-TEKNEALRK---ADEIKNSFVQHVSYEL 580
           L+ S +P+ + +  ++  V + D +  +R L  +++E LR+   A E++N F+   S+EL
Sbjct: 434 LQVSSVPIRDHRGQIVAAVALVDDITQQRQLEQQRSELLRQIESALELRNQFIATASHEL 493

Query: 581 RSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           ++P+T + G+   L+  S+ G L       +E I+     +  L+ND+LD++ ++AG ++
Sbjct: 494 KTPITLLKGYAQVLMDRSREGVLRRP----LEIINRQVDRMSELINDLLDVSKIEAGKLE 549

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    + L D + EV   +  +   +   I++++   +   + DR RL Q+ +  +SNA+
Sbjct: 550 LVLRKVELTDAVREV--VMDQREAASGFEIELLAAEPVW-VLGDRNRLQQVVANFISNAV 606

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF-----NRFVSNAHRGQRRGV 754
            +S     VI++  RD  +   SV + G  IPED    VF      R VS  H     G+
Sbjct: 607 KYSGNSRRVIVEVRRDGPEVEVSVTDYGIGIPEDQQPEVFGLYFRGRNVSPRHYS---GL 663

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL I  + +  HGG + +SS +   +    R+P+
Sbjct: 664 GLGLYICRNIVERHGGRIGMSSREGEGSRFWFRLPA 699


>gi|149200017|ref|ZP_01877043.1| Signal transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
 gi|149136890|gb|EDM25317.1| Signal transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
          Length = 467

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F++H+ +ELRSPL  I  F++L+     G +  KQ   ++ I A++  LL+LVND++
Sbjct: 241 KTRFIRHLGHELRSPLAAISSFSELMLEGMHGDITVKQEASLQRIMANAQNLLDLVNDLV 300

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD--RQR 686
           D A  +AG ++L      L     EV +S+  +  ++   +KVI        V D    R
Sbjct: 301 DQAKAEAGSLELKLEAKDLKAFCEEVLESVKIEAEKSG--LKVIYHASEEDLVCDIHEVR 358

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   ++SNA+ FS +G  + L+  R  G     V+++G  I     +++F  F    
Sbjct: 359 LRQVIVNLISNAIKFSKQGGKLELRVQRKGGLAFIEVEDDGIGISPADQRNIFMEFHQGD 418

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +G GLGL +      LHGG +++ S     +    ++P
Sbjct: 419 TYQKEKGAGLGLHLSRQIARLHGGDITVVSEKGKGSVFRVQLP 461


>gi|153807442|ref|ZP_01960110.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
 gi|149129804|gb|EDM21016.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
          Length = 930

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 136/250 (54%), Gaps = 13/250 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E  L    +    AD +K++F+ ++S+E+R+PL  IIGF+DLL  ++  +L 
Sbjct: 686 DITELKETEAELILARDKAEMADRLKSAFLANMSHEIRTPLNAIIGFSDLLVEAE--NLE 743

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +YV+ +  ++ +LL L+ DILDL+ ++AG  + +   + +N L  ++   +  K+H
Sbjct: 744 ERK-EYVKIVRNNNELLLQLITDILDLSKIEAGTFEFSCGDVDVNLLCEDIVCCMQMKVH 802

Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           E    ++++ D  L     ++DR RL Q+    ++NA+ F+S+GS  +    +     ++
Sbjct: 803 E---EVELLFDSHLPQCHIISDRNRLHQVILNFVNNAIKFTSQGSIRVGYQVKGEELEVY 859

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I E+    +F RFV  N+      G GLGLSI +S I   GG + + S    
Sbjct: 860 -VQDTGVGIDEEQQLHIFERFVKLNSFVP---GTGLGLSICQSIIEQLGGRIGVDSELGK 915

Query: 781 VTTINCRIPS 790
            +    R+P 
Sbjct: 916 GSRFWFRLPG 925


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
          Length = 1499

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 15/246 (6%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TM+T +        E+ L +  +A  ++  IK  F  +VS+E+R+PL  +IG  +LLK  
Sbjct: 247 TMMTVLEAR-----EQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNM 301

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN KQ +YV+    S   LL L+ +ILD + +++G  KL+     L ++L++V   
Sbjct: 302 ---GLNPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGL 358

Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
           +A +     + +  V+ D    S   D  R+ QI   +++NA+ F+ +G   I    L+ 
Sbjct: 359 LAAQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEK 418

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             +     F V++ G  IP +    VF  F        R+  G GLGL+I    ++L GG
Sbjct: 419 KAEKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGG 478

Query: 771 HVSISS 776
            + + S
Sbjct: 479 DIGVES 484


>gi|239933024|ref|ZP_04689977.1| two-component system sensory histidine kinase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 1332

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 14/241 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ +Y
Sbjct: 751 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLSPKQVEY 810

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ +      + N+  
Sbjct: 811 AQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEATFRPMTMQKNLDF 870

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN---GDFI---- 720
            V  + G     + D  RL Q+   +LSNA+ F+ +G   + ++ A D+   G  +    
Sbjct: 871 TVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELRIEPATDDEVPGSVVRGGS 930

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F VK+ G  IPE   +S+F  F        R+  G GLGLSI     +L GG V++ 
Sbjct: 931 VVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 990

Query: 776 S 776
           S
Sbjct: 991 S 991


>gi|296123452|ref|YP_003631230.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296015792|gb|ADG69031.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 576

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 127/251 (50%), Gaps = 31/251 (12%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N  L + ++IKN F+  +S+ELR+PL +I+GF+++L ++   +L  KQ +YV  I 
Sbjct: 285 LAQVNLRLFELNKIKNEFLATMSHELRTPLNSILGFSEVLLST--STLPDKQRRYVSNIQ 342

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LLNL+ND+LDLA +++G M+L+ S   + DL+     S+     + ++ +     
Sbjct: 343 TAGKNLLNLINDVLDLAKIESGRMELHPSDFSIYDLVERQVGSLMPLAEKKHLELTSEVS 402

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AAR---------DNGD-- 718
            ++     D  +L QI   +LSNA+ F+  G  V +K     A R         + GD  
Sbjct: 403 PEVPLLWQDAGKLQQILGNLLSNAIKFTPDGGKVRVKVDLCPAERSPEEQTETIEAGDAP 462

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQR-------RGVGLGLSIVESFI 765
                F   V++ G  IP +  + VF +F    +  GQ+        G GLGLSIV    
Sbjct: 463 PVLDHFALIVEDTGIGIPLEEQERVFEKFRQGQSTPGQKDLLTREYEGTGLGLSIVRELS 522

Query: 766 NLHGGHVSISS 776
            L GG V + S
Sbjct: 523 RLMGGEVRLQS 533


>gi|163741325|ref|ZP_02148717.1| sensor histidine kinase [Phaeobacter gallaeciensis 2.10]
 gi|161385678|gb|EDQ10055.1| sensor histidine kinase [Phaeobacter gallaeciensis 2.10]
          Length = 892

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQ 608
           R  R L E NE L +  + K++F+  VS+ELR+P+T+I  F+++L+ T  L S     S+
Sbjct: 649 RTARKLQETNEKLTQLSQQKDAFLSQVSHELRTPMTSIRAFSEILRDTENLAS--QDHSR 706

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I   +  L  L+ND+LDL+ ++ G + LN S   L D+L+    ++AT + + + R
Sbjct: 707 YAGIIHDEAQRLTRLLNDLLDLSVLENGQVSLNISAGRLGDVLD---HAVATALADGSAR 763

Query: 669 IKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKN 725
           ++V  D         +D  RL Q+F  +++NA  + +     +   AR +G ++F    +
Sbjct: 764 LRVERDAATDDMRLSSDLDRLAQVFINLIANADKYCTAADPQLRITARQSGHWLFIDFID 823

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           NG  IP     ++F +F S     +  G GLGL+I    +   GG V+  S + G
Sbjct: 824 NGDGIPPAFRTTIFEKF-SRVSPERAGGAGLGLAICREIMQRLGGDVAYLSGEVG 877


>gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
 gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
          Length = 587

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|310640162|ref|YP_003944920.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309245112|gb|ADO54679.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 589

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E  E  ++ + ++  F  + S+EL++PL+ I GF + L+    G    KQ  Y+
Sbjct: 353 ANQQLVEDMEQKQRMEAVQQDFFANASHELKTPLSIIKGFAEGLQD---GVSAGKQDHYM 409

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I   +  +  LV D+LDLA +++G +KL  +T +L++L+ EV   +   + E  + + 
Sbjct: 410 KVIVEEADKMERLVKDMLDLAKLESGTLKLRKATFILSELVEEVVDKLFHLLKEKKLEVV 469

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +I   +L    AD   + Q+    + NA+  + +GS++ ++         FS++N G +I
Sbjct: 470 IIPANEL-PIHADIGWMEQVIINFVVNAIRHAEEGSSITIRIEGSGEVNTFSIENKGETI 528

Query: 731 PEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           P+D  + ++NRF     +   Q  G GLGLSIV+  ++LH       ++ +GV
Sbjct: 529 PDDQLELIWNRFYRAELSRSRQTGGTGLGLSIVKRILDLHEFRYKAENTKDGV 581


>gi|298377731|ref|ZP_06987682.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298265434|gb|EFI07096.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 622

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 10/242 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L   +  Y+ 
Sbjct: 382 EEDLILAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSEL---RQNYIS 438

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I  ++ +LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E   + + 
Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLD 498

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
              D     F  DR RL QI   +L+NA+  + KG              I F V + G  
Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTLEAEEKMIKFYVSDTGCG 555

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D   ++F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P
Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613

Query: 790 SK 791
            K
Sbjct: 614 MK 615


>gi|86360995|ref|YP_472882.1| two-component sensor histidine kinase/response regulator hybrid
            protein [Rhizobium etli CFN 42]
 gi|86285097|gb|ABC94155.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CFN 42]
          Length = 2099

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 16/244 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L++KQ ++
Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSAKQVEF 1465

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I  + T LLNL++DILDL+ +++G + ++   I +++LL  + +    +    N+  
Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRNLSF 1525

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717
             V +      S + D +RL QI   +LSNA  F+++G   +  A+  +G           
Sbjct: 1526 AVEVGADVTKSIITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASVTSGWSPEHPSLRHA 1585

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F V + G  IP +  + +F  F        R+  G GLGL+I     NL GG + 
Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645

Query: 774  ISSS 777
            + S+
Sbjct: 1646 LRSA 1649


>gi|21244408|ref|NP_643990.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110069|gb|AAM38526.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 631

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 127/242 (52%), Gaps = 20/242 (8%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISA 615
           +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +   Q  Y  +  I++
Sbjct: 242 RNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVIAS 296

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIRIK 670
           S+     L++D+LDL+++  G ++L   ++   DL+ +V+     Q +A +  +  + + 
Sbjct: 297 SARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLELH 353

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V     L   + D  RL Q+   +LSNA+ F+     + +K  RD+G  + SV ++G  I
Sbjct: 354 VPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGI 411

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787
             +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T   R
Sbjct: 412 AAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVR 471

Query: 788 IP 789
           +P
Sbjct: 472 LP 473


>gi|293607347|ref|ZP_06689686.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814191|gb|EFF73333.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 939

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 147/314 (46%), Gaps = 22/314 (7%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTD 547
           R++  + GW     I+++  DE     G    L+D    Y S  P       +    ++D
Sbjct: 384 RWFQGTPGWR--TEILSAQGDE----AGREHRLNDGRTAYLSFAPTTYRGEAVVLCGISD 437

Query: 548 SV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                R E++L +       A++ K  F+  +S+E+R+PL  I+G  +L   +++   + 
Sbjct: 438 ISALKRIEQSLLQAKRDAEAANQAKTVFLTTMSHEIRTPLYGILGTLELFSLTRV---SG 494

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q+QY+E I  SS  LL  +ND LDL+ ++AG   L  +     +LLN V  S A + H 
Sbjct: 495 QQAQYLETIQQSSATLLRTINDTLDLSRIEAGHTVLERAPFSPVELLNNVVASFAARAHA 554

Query: 665 NNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA---ARDNGDF 719
             +R   ++D     + + D  R+ QI   + +NA+ F+  G  V+ LK     RD+ D 
Sbjct: 555 KGVRSYAVADPDAPPAVIGDATRIRQILDNLANNAIKFTDSGQIVLRLKVNSRTRDSVDL 614

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISS 776
            F + + G+ I       +F  +  V   +     G GLGLSI  S  ++  G + ++S 
Sbjct: 615 CFQIADTGAGIAPKHQARLFEPYYQVDADNCVTLPGTGLGLSICRSLSDMMNGRLNAVSE 674

Query: 777 SDEGVT-TINCRIP 789
              G + T   R+P
Sbjct: 675 PGLGTSITFEIRLP 688


>gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1329

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 131/245 (53%), Gaps = 17/245 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ML+ +++++ V A        E    A + K+ F+ ++S+E+R+P+  IIG   L++ +K
Sbjct: 562 MLSMIDISEVVAAR-------EIAEHATQAKSEFLANMSHEIRTPMNAIIGMAHLIQETK 614

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L   + +Q  ++E IS ++T LL ++N+ILD + ++A    L  + +VL D++ EV    
Sbjct: 615 L---DERQLGFIERISHAATSLLGIINNILDFSKIEANKQDLEITQLVLQDIIGEVAALA 671

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
             ++    I + V  D ++    + D  RL QIF+ +++NA  F+  GS T+ +K  +  
Sbjct: 672 EVRIAGRPIELIVDIDPEIPEVLMGDPLRLSQIFTNLINNATKFTESGSITLQIKQEQVI 731

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           G+ I   FSV + G  +  D    +FN F        R+  G GLGL I +S + L GG 
Sbjct: 732 GNNIKLSFSVIDTGIGMTTDQLHHLFNAFTQADGSITRKYGGTGLGLVISKSLVELMGGE 791

Query: 772 VSISS 776
           + + S
Sbjct: 792 LQVES 796


>gi|154251880|ref|YP_001412704.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155830|gb|ABS63047.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 717

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 14/272 (5%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAE-RALTEKNEALRKADEI-------KNSFVQHVSYELRS 582
           P   A  M T  N V D   +E R   +    LR A ++       K+ F+ ++S+ELR+
Sbjct: 433 PFTEAGEMATRYNLVLDKFNSEVRKREQTANDLRDARDVAELANASKSQFLANMSHELRT 492

Query: 583 PLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           PL  IIGF++++     G + N +   YV  I  SS+ LL+L+NDILDL+ ++A   +L 
Sbjct: 493 PLNAIIGFSEVMNGELFGPIENERYKDYVGDIHKSSSHLLSLINDILDLSKIEADRYELY 552

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + + D++   ++ +  +  E  + +KV  + +L   +AD++ L QI   ++SNA+ F
Sbjct: 553 EEELDVMDVVASCERMMRHRADEAGVALKVTVEDELPLLMADKRALRQIVLNLVSNAVKF 612

Query: 702 SSKGSTVILKA-ARDNGDFIFSVKNNGSSIPE---DMCKSVFNRFVSNAHRGQRRGVGLG 757
           + KG  + L A    +G   F V + G  + +    +    F +   +++     G GLG
Sbjct: 613 TPKGGLIQLGAFMEPDGRMAFRVADTGVGMSKKDIPIALEPFRQIGKDSNVYSTEGTGLG 672

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L +  +   LHG  + I S     TTI  R+P
Sbjct: 673 LPLTRALARLHGASLVIESEPGEGTTITIRMP 704


>gi|26988382|ref|NP_743807.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24983135|gb|AAN67271.1|AE016353_11 sensor histidine kinase/response regulator GacS [Pseudomonas putida
           KT2440]
          Length = 917

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   +  +Q  Y+  I  S+
Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLNTIEKSA 331

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   +  + +I    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731
             S V D  RL QI + ++SNA+ F+ +G T++++A       D      SV++ G  + 
Sbjct: 392 PASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498


>gi|325929297|ref|ZP_08190428.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325929316|ref|ZP_08190447.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540319|gb|EGD11930.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540338|gb|EGD11949.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
          Length = 648

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 20/244 (8%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613
           + +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +   Q  Y  +  I
Sbjct: 257 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVI 311

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIR 668
           ++S+     L++D+LDL+++  G ++L   ++   DL+ +V+     Q +A +  +  + 
Sbjct: 312 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLE 368

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V     L   + D  RL Q+   +LSNA+ F+     + +K  RD+G  + SV ++G 
Sbjct: 369 LHVPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGD 426

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
            I  +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T  
Sbjct: 427 GIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFT 486

Query: 786 CRIP 789
            R+P
Sbjct: 487 VRLP 490


>gi|144898582|emb|CAM75446.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 822

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 129/269 (47%), Gaps = 8/269 (2%)

Query: 529 SIIPLPNAQTMLT-FVNVTDSVRAERALTEK-NEALRKADEI---KNSFVQHVSYELRSP 583
           +I P+ +   ++T FV V +   + R   E+  EA R A+     K+ F+  +S+ELR+P
Sbjct: 405 TISPVTDDSGVITHFVAVEEDATSRRDGEEELREAKRMAEAASLAKSEFLSSMSHELRTP 464

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+GF  LL  +   SL  +Q  Y + I  S   LL+LVNDILD+A ++AG + L++ 
Sbjct: 465 MNAILGFAQLLTNADNDSLGERQRFYADSILKSGNHLLSLVNDILDMARIEAGRLSLSFE 524

Query: 644 TIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            +  + ++ E+   IA       +  I  IS     +  AD  RL Q    + SNA+ ++
Sbjct: 525 RVEPDQVMAEIIPMIAATAERRKVTLIDEISGRGAPAVEADFTRLKQALINLASNAVKYN 584

Query: 703 SKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSI 760
             G TV    +  + G    +V + G  IPE     VF  F    A      G G+GL+I
Sbjct: 585 RTGGTVRFSISHGETGPVRIAVSDTGIGIPEKRRTEVFQPFARLGAEASTVEGTGIGLTI 644

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  +   GG +   + +   TT    IP
Sbjct: 645 TKMLVEAMGGQIGFFTQENLGTTFWLEIP 673


>gi|75907228|ref|YP_321524.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700953|gb|ABA20629.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 646

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 133/266 (50%), Gaps = 13/266 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALR----------KADEIKNSFVQHVSYELRSPL 584
           N Q +    + TD    + A  E+++ L+           A++ K+ FV  VS++LRSPL
Sbjct: 380 NGQPVRVVGSATDISDRKLAEAERDQLLQLEKLARAEAEAANQTKDEFVAMVSHDLRSPL 439

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G++ LL+T +L    S  ++ +E I  ++     L+ D+LD++ +  G ++L +  
Sbjct: 440 NAILGWSQLLRTRQLD--ESTFTRALETIERNAQSQSKLLEDLLDMSRILRGKLQLEFCL 497

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L  ++    ++        +I +K + D  +     D  RLLQ+   +LSNA+ F+  
Sbjct: 498 VELPAIIGVAIETAYPSAKAKDIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPP 557

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
              + ++ +  + +   +V + G  I  +    VF R+     + ++ G+GLGL+I    
Sbjct: 558 EGQITVQLSYTDSEAHITVIDTGIGIKSEFLPYVFERYRQADCQHKQHGLGLGLAIARYL 617

Query: 765 INLHGGHVSISSSDEGV-TTINCRIP 789
           I LHGG + ++S  EG  TT   ++P
Sbjct: 618 IELHGGAIHVNSLGEGQGTTFTIKLP 643


>gi|89099083|ref|ZP_01171962.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086213|gb|EAR65335.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 590

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 165/354 (46%), Gaps = 36/354 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV  F  DG I ++NP    F   W  E+     G    NI A  S          L
Sbjct: 262 MADGVITFSRDGTILVTNPPAERFIQNWYYEQ-----GEESTNIEAVPSEVMK------L 310

Query: 500 FAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           F   + +  ++     +QG + ++  S       PL N     TF+    +V   R +TE
Sbjct: 311 FQRAVDTGKEQIGEMPIQGRIWVIIVS-------PLYNN----TFIR--GAVAVLRDMTE 357

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +    R+ D+++  F+ +VS+ELR+P+  + G+++ +    +   + ++ +    I   S
Sbjct: 358 E----RQLDKLRKDFIANVSHELRTPIAMMQGYSEAI-VDDIAGTDEEKKEMASVIYDES 412

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +  LVN++LDLA ++AG ++L    + L   ++ + +       E  I+++       
Sbjct: 413 LRMGRLVNELLDLARMEAGHIQLTLDRVELKPYISRIARKFQGLSKEKIIKLESEFSITE 472

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             FV D  R+ Q+ + ++ NA+  + +  +V +    +    +  V ++GS IPE+    
Sbjct: 473 DDFVFDPDRIEQVLTNLIDNAIRHTPEDGSVKITVKSEEKGLMVEVSDSGSGIPEEDLPF 532

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           VF RF     A    R G GLGL+I ++ I+ H G +S+ S  +  TT +  IP
Sbjct: 533 VFERFYKADKARTRGRSGTGLGLAIAKNIIDAHKGQISVQSKLQQGTTFSFVIP 586


>gi|319902564|ref|YP_004162292.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319417595|gb|ADV44706.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 622

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D   +E AL E  E   ++  +K++F+ ++S+E+R+PL  I+GF+D+L  S  GS   +Q
Sbjct: 381 DLQESEGALLEAKERAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVL--SAGGSSEEEQ 438

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHEN 665
             Y E I  +S +LL L+NDILD++ ++A  +K       +  +  ++  S+A  +  +N
Sbjct: 439 RSYFEIIKTNSDLLLRLINDILDVSRLEADRVKFKSEDCNVALVCRQIVASVAQARKSDN 498

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVK 724
               +  SD        D QRL Q+   +LSNA  F+  G+ T+ L+  RD    +FSV 
Sbjct: 499 RFLFECGSDSV--KIRTDVQRLQQVVINLLSNADKFTKNGTITLKLEINRDGNMAVFSVT 556

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + G  IP D    VF RF       Q  G GLGLSI +      GG + I  +
Sbjct: 557 DTGCGIPLDKQGLVFERFEKLNEYMQ--GTGLGLSICKLTTEKWGGKIWIDPT 607


>gi|309780589|ref|ZP_07675335.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
 gi|308920639|gb|EFP66290.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
          Length = 1437

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 126/251 (50%), Gaps = 14/251 (5%)

Query: 549  VRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            V AER   +  EA + A E     K+ F+  +S+E+R+P+  ++G  +LL+ +KL     
Sbjct: 809  VTAEREQADALEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL---EG 865

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +Q Q V  +  S   LL++++DILD A V+AG + ++ S   L ++ +     +A++ HE
Sbjct: 866  EQKQMVSLVQDSGRALLHILDDILDYAKVEAGRLDISPSATDLREVFDGTVGLLASRAHE 925

Query: 665  NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----F 719
              + + V    ++ + V+ D  RL QI   +LSNA+ F+  GS  +     D  D     
Sbjct: 926  KALAMHVDVAAEVPASVSVDGIRLRQILFNLLSNAIKFTDAGSVRLSAKCTDVTDDTAHL 985

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              SV + G  I  ++  ++F  FV       RR  G GLGL+I      L GG + + S+
Sbjct: 986  AISVSDTGIGISPEVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGELVMESA 1045

Query: 778  DEGVTTINCRI 788
                T +  R+
Sbjct: 1046 PGHGTAVTLRL 1056


>gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
 gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
          Length = 1963

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 1353 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFA 1412

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M+++ + I L  L++ V+ +      E N+   
Sbjct: 1413 ETIYGAGSDLLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFS 1472

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   +I  A  D  D I       
Sbjct: 1473 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEA 1532

Query: 721  ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                        FSV + G  I E   + +F  F        R+  G GLGLSI      
Sbjct: 1533 GSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1592

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1593 LLGGEIDAQSQPGRGSTFTLYLP 1615


>gi|88859369|ref|ZP_01134009.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Pseudoalteromonas tunicata
           D2]
 gi|88818386|gb|EAR28201.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Pseudoalteromonas tunicata
           D2]
          Length = 901

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 6/249 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+ ++ E+AL    +   KA ++K+ F+ ++S+E+R+P+  + G   LLK   L S  
Sbjct: 512 DLTEQLKREQALAHAKDRAEKAVKVKSEFLANMSHEIRTPMNGLFGVMQLLKQENLSSDG 571

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                   Y + + T++   +NDILD + ++AG + L  +   L++L+  +   ++    
Sbjct: 572 KNLLDKALYSAKNLTVI---INDILDFSKIEAGKLTLELTNFKLSELIEHINSDLSVNAF 628

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS 722
              I +    + K   +  D  R+ QI   I+SNA+ F++ G   V++ A   +     S
Sbjct: 629 NKQIDLTFEINVKHDFWFGDPIRIRQILLNIISNAIKFTNTGGVKVLVNALPTSNGLQIS 688

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  D  + +FNRF        R+  G GLGLSI +S I+L  G +S++S +  
Sbjct: 689 VIDTGIGIAPDAIERLFNRFEQADKSTTRKYGGTGLGLSISQSLIDLMQGEISVTSEENK 748

Query: 781 VTTINCRIP 789
            T+ +  IP
Sbjct: 749 GTSFSIMIP 757


>gi|67924012|ref|ZP_00517464.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67854152|gb|EAM49459.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1068

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 10/216 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+ELR+PL  I+GFT +++  +   LN    Q +E I  S   LL L+NDIL
Sbjct: 602 KSEFLASMSHELRTPLNAILGFTQVMQRDQ--ELNPDHKQNLEIIGRSGEHLLELINDIL 659

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           ++  ++AG    N +   L  LL+ ++  +  K  E N+++       L  ++  D  +L
Sbjct: 660 EMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKIENLPQYIETDESKL 719

Query: 688 LQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFI--FSVKNNGSSIPEDMCKSVFNR 741
            Q+   +L NA+ F+ +G  ++     +   DN + I  F V++ G  I  +    +F  
Sbjct: 720 RQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIILTFEVEDTGPGIAPEEVDQLFEA 779

Query: 742 F-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F  +   R    G GLGL I + F+ L GG +S+SS
Sbjct: 780 FGQTETGRNSNEGTGLGLPISQKFVQLMGGEISVSS 815


>gi|313500183|gb|ADR61549.1| GacS [Pseudomonas putida BIRD-1]
          Length = 917

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   +  +Q  Y+  I  S+
Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLNTIEKSA 331

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   +  + +I    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731
             S V D  RL QI + ++SNA+ F+ +G T++++A       D      SV++ G  + 
Sbjct: 392 PASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498


>gi|255007853|ref|ZP_05279979.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313145560|ref|ZP_07807753.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134327|gb|EFR51687.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 631

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + L E      +A+++K++F+ ++S+E+R+PL  I+GF++LL   +      +  +Y
Sbjct: 392 KTHQRLEEARLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSQVED---KEEMKEY 448

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L++DILD++ +++G+   + +   +N +++E++Q    K+   +  +
Sbjct: 449 ADIIETNTDLLLQLISDILDMSKIESGMYDFHITRADVNQMMSEIEQ--VGKLRIKSEEL 506

Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +  D +L   +   D+ RL Q+   +L+NA+ F+S G   +    +D     F V + G
Sbjct: 507 VLTFDEQLPQCILYTDKNRLTQVIINLLTNAIKFTSGGEIRMGYRLKDAATLYFYVSDTG 566

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +  + C+ VF RFV   +    +G GLGLSI    I   GG + ++S
Sbjct: 567 CGMSTEQCEHVFERFVK--YNPFIQGTGLGLSISRMIIEKLGGEIGVTS 613


>gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB]
 gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1028

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 188/417 (45%), Gaps = 56/417 (13%)

Query: 401 HVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           H ++ +  +G  ++  + NLT  V  E         Q   +  L EGV     DG     
Sbjct: 465 HTVIDTADKGPMMFCLDINLTELVHTEQALIESESRQRMILQTLGEGVYGTDLDGVCTFI 524

Query: 460 NPA-FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA----IITSFDDERKSL 514
           NPA    L   E+  L   TH          +++ +DG  L  A    I+T+ D + + L
Sbjct: 525 NPAALDYLGLQEDEALGKNTH-------TLFHHHRADGTPLPLAECPLILTARDGQSRRL 577

Query: 515 QGT----------LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL--------- 555
           +            + L   + L   +I       +++F +++++ R  + L         
Sbjct: 578 EDVFWRKNGECFPVRLTITAKLRDGVI----TGVVVSFADISENRRVAKELEQHHTHLEA 633

Query: 556 -----TEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                TE+ E  R+A E     K++F+ ++S+E+R+PL  ++G   LL+     +   +Q
Sbjct: 634 QVRQRTEQLEIARQAAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLRRD---APTLEQ 690

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ I ++S  LL ++NDILD++ ++AG + L+ +T+ +  +L  V   +  +  +  
Sbjct: 691 IDRLDKIDSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRVVSVLGDRARQKG 750

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFI-F 721
           + ++V++D    +F+ D  R+ Q       NA+ F+  GS + LKA R     NG  I F
Sbjct: 751 LELRVLADDFPHTFIGDPTRITQCLINYAGNAVKFTEHGS-ITLKARRMADDSNGVLIRF 809

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            V++ G  I +D    +F  F        R+  G GLGL+I      L GG V +SS
Sbjct: 810 EVEDTGIGISDDAIDRLFGIFEQADSSTSRKFGGTGLGLAITRRLAELMGGKVGVSS 866


>gi|76800727|ref|YP_325735.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76556592|emb|CAI48163.1| signal-transducing histidine kinase; probable PAS/PAC domain
           protein [Natronomonas pharaonis DSM 2160]
          Length = 628

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 15/276 (5%)

Query: 525 VLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           VLE + IP   A T  T V     ++T+    ER L  +   LR+++E    F   VS++
Sbjct: 356 VLETTKIPFEVAGTDETAVLGYARDITERDTYERELDARRRELRESNERLQQFAYVVSHD 415

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L+ PL  +  + DLL++     L+++  +Y+++    +  +  +++ +L  + V+     
Sbjct: 416 LQEPLRMVSSYLDLLESEYSDDLDAEAREYIDFAVDGAERMSRMIDALLSYSRVE--TRG 473

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
              + +    +  E  + +  ++ E N RI+      L + +ADR +L Q+F  +LSNA+
Sbjct: 474 EEPAPVDAAAVFEEAHRDLKQRIEETNARIEA---DDLPTVLADRSQLGQLFRNLLSNAI 530

Query: 700 DFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGL 756
           +++     V+ +   R NG+++F+V + G  I E   + +F  F    NA RG   G G+
Sbjct: 531 EYAGDEPPVVDVAVERQNGEYVFAVADEGVGIHERDREDIFEVFQRGRNADRGS--GTGI 588

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I    ++ HGG + + S+    TT    +P+ E
Sbjct: 589 GLAICRRIVDRHGGDIWVDSTVGDGTTFYFTLPAPE 624


>gi|323694713|ref|ZP_08108873.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323501228|gb|EGB17130.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 895

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 127/226 (56%), Gaps = 10/226 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  AL  KNE LR      ++ ++ +S++LR+PLT+I G   +L +S+      K+ +  
Sbjct: 655 AAAALLAKNEQLR------SNLLRSISHDLRTPLTSISGNAGILLSSEQSIGKEKRRKLY 708

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I   S  L+NLV ++L +  ++ G MKL  +T +L++++ E  +    +  E+ I+IK
Sbjct: 709 EDIYDDSLWLINLVENLLSVTRIEDGTMKLRLATELLDEVVGEALRHTDRRRCEHKIKIK 768

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              D  L    AD + ++Q+   ++ NA+ ++  GS V+++  R+    + +V +NG  I
Sbjct: 769 QEEDFLL--VKADARLIMQVIINLVDNAIKYTPPGSEVVIETKREGNLAVVTVADNGDGI 826

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
            ++  + +F+ F + A +    RR +GLGL++ +S I  HGG +S+
Sbjct: 827 SDESKEHIFDMFYTAATKIADSRRSLGLGLALCKSIITAHGGTISV 872


>gi|291441377|ref|ZP_06580767.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
 gi|291344272|gb|EFE71228.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
          Length = 1334

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 14/241 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ +Y
Sbjct: 753 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLSPKQVEY 812

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ +      + N+  
Sbjct: 813 AQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEATFRPMTMQKNLDF 872

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN---GDFI---- 720
            V  + G     + D  RL Q+   +LSNA+ F+ +G   + ++ A D+   G  +    
Sbjct: 873 TVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELRIEPATDDEVPGSVVRGGS 932

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F VK+ G  IPE   +S+F  F        R+  G GLGLSI     +L GG V++ 
Sbjct: 933 VVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 992

Query: 776 S 776
           S
Sbjct: 993 S 993


>gi|224588363|gb|ACN58987.1| GAF sensor hybrid histidine kinase [uncultured bacterium BLR19]
          Length = 2129

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 16/255 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A ++L EK E L    + K+ F+ ++S+ELR+PL +++     L  +  G+LN +Q +Y 
Sbjct: 1415 ARKSLEEKAEQLTLTSKYKSEFLANMSHELRTPLNSLLILAQQLYENAEGNLNDRQIRYA 1474

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I +    L+ L+NDILDL+ +++G +  N S++ + ++ + V+ +        N+R +
Sbjct: 1475 KTIHSCGDDLIQLINDILDLSKIESGFISANISSVKIGEITSFVETTFKPISEARNLRFR 1534

Query: 671  VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAAR---------DNGD 718
            + +D +L  S   D QRL QI   +LSNA  F+ KG  S  I  A +         D+  
Sbjct: 1535 IETDYELPASMETDIQRLNQILKNLLSNAFKFTEKGEVSLRIYSAKKSWKPGLPTLDSAP 1594

Query: 719  FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
             +  FS+ + G  IP++    +F  F        R+  G GLGLSI      L GG + +
Sbjct: 1595 TVVAFSISDTGIGIPQEKQLIIFEAFQQAEGSTSRKYGGTGLGLSISRGLAELLGGTIEL 1654

Query: 775  SSSDEGVTTINCRIP 789
             S     +T    IP
Sbjct: 1655 ESQAGMGSTFTLYIP 1669


>gi|254512907|ref|ZP_05124973.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
 gi|221532906|gb|EEE35901.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
          Length = 478

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 3/233 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +++E  R A + K+ FV  +S+ELR+PLT+I G  DL ++ KLG  +   S  ++   
Sbjct: 237 LRKEHEKSRAAYKAKSEFVSTMSHELRTPLTSIKGSVDLAQSGKLGKTSKNVSAALKMAQ 296

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L++ ILD  + ++G M        L +L+ +   S+     E  I ++    
Sbjct: 297 RNCDRLLKLIDQILDFQSAESGQMTFERQRFDLVELITDTFSSVRPSASEKGISLRSEFP 356

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D+QRL Q+   IL+NA++FS K S +++    DNG      ++ G  + E  
Sbjct: 357 DREVEITGDKQRLQQVIDNILTNAINFSPKDSDIVVFLQTDNGKVRILFRDTGIGLSESD 416

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVTTI 784
              VF+ F        R   G GLGLS+    +  HGG ++   +SD G T +
Sbjct: 417 EARVFDPFTQLDSSDSRSIGGTGLGLSVSRQIVEAHGGTITYHKNSDTGTTFV 469


>gi|39726361|gb|AAR30123.1| putative histidine kinase HHK6p [Gibberella moniliformis]
          Length = 1369

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 125/218 (57%), Gaps = 12/218 (5%)

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +K+ F+ ++S+E+R+P+T ++G  +LL   +L   +++Q +YVE I +S+T LL ++NDI
Sbjct: 798  LKSQFLANMSHEIRTPITGVLGMAELLSGMQL---DAEQQEYVENIQSSATSLLTVINDI 854

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV--ADR 684
            LD + V++G + +      L+ ++ EV + +   +   N+  +  I DG     V   D 
Sbjct: 855  LDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDIGDGIENDLVVIGDP 914

Query: 685  QRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             R+ QI + +L+N++ F+++G    S    K   ++ +  F+V+++G  I +D+ K +F 
Sbjct: 915  GRVRQILTNLLTNSIKFTNQGYVRFSVTAEKETSESIEVRFTVEDSGIGIQDDVRKKLFQ 974

Query: 741  RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F        RR  G GLGL+I ++ ++L  G +S+ S
Sbjct: 975  PFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLES 1012


>gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 587

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|46576353|sp|O34206|KINB_PSEAE RecName: Full=Alginate biosynthesis sensor protein kinB
 gi|2352098|gb|AAB68790.1| histidine protein kinase [Pseudomonas aeruginosa]
          Length = 595

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 163/347 (46%), Gaps = 35/347 (10%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            +D + +G+ +F   GRI+ +NP A R L+ + +     G  I  I +       E+   
Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILSDVD--VQEA--- 314

Query: 498 DLFAAIITSFDDERKSLQGTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVR 550
            +  A++    DE        +L+ D      +L +S+ P+  P   ++   + V D   
Sbjct: 315 -VEKALLGEVQDE-----AMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRD--- 365

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               +TE+    R  + +++ FV   S+ELR+P+T +     LL+        S+++  +
Sbjct: 366 ----VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLI 417

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +    + L+ L+ND+L+ +    G+ KL  ++  L DLL + +Q    K     + ++
Sbjct: 418 QTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQ 477

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +    +L     DR ++ ++   +L NA+  SS+G  + L+A R     + +V++NG  I
Sbjct: 478 LELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGI 537

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           P      +F  FV    +  + G GLGL + +  I LHGG +++ S 
Sbjct: 538 PFSQQGRIFEPFVQVGRK--KGGAGLGLELCKEIIQLHGGRIAVRSQ 582


>gi|315181101|gb|ADT88015.1| sensor histidine kinase FexB [Vibrio furnissii NCTC 11218]
          Length = 781

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---LDPEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 MQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAPLNFEEFVAELESLSALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L + V  D  RL Q+   ++SNAM F+ +G  V+  +A   GDF   +  +++
Sbjct: 381 DLERLTDLPALVEVDATRLRQVLWNLISNAMKFTKEGGVVMSVSAEVEGDFANIVMDIED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            G  IPE     +F  +    S        G G+GL++    INL GG +S+SS +
Sbjct: 441 TGIGIPESELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINLMGGDISVSSEE 496


>gi|170016614|ref|YP_001727533.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
 gi|169803471|gb|ACA82089.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
          Length = 369

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 10/274 (3%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           SD  +++     P  Q ++   N +  + R  R      E  R ++  K+  + ++S++L
Sbjct: 94  SDMTIDWHAHYAPRTQALIDVSNKIAKNTRKIR------EEERASERSKDEMITNISHDL 147

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT IIG+  L++ +        +++Y+      S  +  LV D+ + +   A    L
Sbjct: 148 RTPLTAIIGYLGLVEMNATTLSPEDRAKYIHTAYDKSNQMKILVEDLFEFSKTQARDAVL 207

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N +TI L DL  ++  S   + HE+ I +  I++ +L    AD  +L ++   +++NA  
Sbjct: 208 NLTTISLGDLFAQLLASYEIEAHEHQIEMMQITNPELIILEADSDKLARVLINLITNAFK 267

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           +    + + L A     +    V NNG  IP++    +F+RF  V ++   +  G GLGL
Sbjct: 268 YGEGATYIKLTAQVKAQEVEIRVINNGVQIPQEALLEIFDRFYRVESSRNSKTGGTGLGL 327

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +IV+  I  HGG V  ++SD  +TT    +P K+
Sbjct: 328 AIVKGIILQHGGTVR-ATSDAELTTFIMTLPLKQ 360


>gi|162448894|ref|YP_001611261.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159476|emb|CAN90781.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 918

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 16/285 (5%)

Query: 511 RKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEI 568
           R   +G + LLS +    Y++  L  A+ +  F  +  D+ +  R   + N A       
Sbjct: 491 RDRTRGAITLLSTEPSRRYTVEDLALAEELCNFAALALDNAQLYRESQQVNRA------- 543

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDI 627
           K+ F+  +S+ELR+PLT I+G+  +L+    GSL      + +E I  + T+   LV D+
Sbjct: 544 KDEFLATLSHELRTPLTAILGWARMLRQ---GSLKPDTHVRALEAIERNGTLQAQLVEDL 600

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + +  G ++L+   + L  ++N    ++        I + V  D   G    D+ RL
Sbjct: 601 LDASRIITGKLRLDVMLVDLPPIINAAIDAVRHGADAKGIELLVQLDPNAGPISGDQTRL 660

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +LSNA+ F+ +G  V ++  R  G     V + G  I  +    VF+RF     
Sbjct: 661 QQVVWNLLSNAIKFTPRGGKVSIQLGRAEGLARIQVSDTGQGIVPEFLPYVFDRFRQADS 720

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
              R   G+GLGL+I    I LHGG V   S+ +G   T    IP
Sbjct: 721 TSTRPHSGLGLGLAIARHLIELHGGTVKAESAGDGKGATFTVDIP 765


>gi|152995118|ref|YP_001339953.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836042|gb|ABR70018.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1121

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 6/240 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++++  V  E  L +       + E K SF+ ++S+E+R+P+  IIGF+D+L  S++   
Sbjct: 514 LDISQRVEMEDELRQAKAKAEASVESKASFLANMSHEIRTPMNAIIGFSDILLESEISGE 573

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N K   ++  IS S+  LL+L+NDILD A ++   ++L+    VL + ++ V  ++  + 
Sbjct: 574 NKK---HLSIISKSARSLLHLLNDILDSAKLEKNKLELDIQPFVLANSVDTVISTLWLQA 630

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               + +   I      +++    R+ Q+   IL NA+ F+ KG   +      +G   F
Sbjct: 631 RNKGLELNFNIEKDVAVAYLGAEDRIRQVLMNILGNAVKFTEKGHVTLNVLKLQDGKIRF 690

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SV ++G  IPE+    +F+ F        RR  G GLG SI +  + L GG + ++S  E
Sbjct: 691 SVTDSGIGIPEERLTHIFDPFTQADASMSRRFGGTGLGTSISKQLVTLMGGQIHVTSEAE 750


>gi|219848900|ref|YP_002463333.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543159|gb|ACL24897.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 752

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 136/280 (48%), Gaps = 20/280 (7%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEAL 562
           I  F D+R      L  L D+ +  S+ P+     T+L +V V         LTE+    
Sbjct: 456 IPGFGDQRAQ---DLFALGDAFIRLSVAPVKEENGTLLGYVAVLQD------LTEEV--- 503

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              D  K +F+  +S+ELR+PLT I G  DLL     G L+ +Q  +VE I   +  + N
Sbjct: 504 -MVDRAKTNFIGTISHELRTPLTVIRGNADLLLRGLAGPLDEEQKSFVESIRLHANNMTN 562

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+++++ +A +D+G +K N   I +   + +    + +++    +++++    KL + +A
Sbjct: 563 LISNVITIANLDSGSLKSNLEPIEVRRPIEDAVWQVQSQIKAKGLQLEIAIPKKLPTVLA 622

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   +  I  ++L NA  +++ G T+ ++A          V + G  IP  M + +F RF
Sbjct: 623 DVDHVRTIMIQLLDNARRYTNAG-TITIRAIPQPDMMRIEVSDTGRGIPPHMHEQIFERF 681

Query: 743 V-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +     S       RG+GLGL+I +  +   GG + + S+
Sbjct: 682 IRGEGTSEGINSSERGIGLGLAIAKQLVERLGGTIGVEST 721


>gi|78049360|ref|YP_365535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037790|emb|CAJ25535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 678

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 20/244 (8%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613
           + +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +   Q  Y  +  I
Sbjct: 287 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVI 341

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIR 668
           ++S+     L++D+LDL+++  G ++L   ++   DL+ +V+     Q +A +  +  + 
Sbjct: 342 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLE 398

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V     L   + D  RL Q+   +LSNA+ F+     + +K  RD+G  + SV ++G 
Sbjct: 399 LHVPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGD 456

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
            I  +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T  
Sbjct: 457 GIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFT 516

Query: 786 CRIP 789
            R+P
Sbjct: 517 VRLP 520


>gi|330503188|ref|YP_004380057.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
 gi|328917474|gb|AEB58305.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
          Length = 1230

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 7/223 (3%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           +SF+ ++S+E+R+P+  IIGFTDLL  +    L+  Q +++  +  SS  LL L+NDILD
Sbjct: 658 SSFLANMSHEIRTPMNAIIGFTDLLLETP---LSPDQRRHLSTVQHSSRSLLGLLNDILD 714

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLL 688
            A +D G ++L      L +L  +V  +         +++ +     +G F + D  RL 
Sbjct: 715 TAKLDRGAIELEQLDFSLRELCEQVVATQRLTAESKGLQLHLDYPSTVGDFFSGDPLRLQ 774

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ + +L NA+ F+ +G  V LK + + G    +VK+ G  I  D  + +F  F      
Sbjct: 775 QVLTNLLGNAVKFTQQGE-VRLKVSGEPGAMRLAVKDTGIGIAADRLEKIFEPFAQADAS 833

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             RR  G GLG +I    + L GG + + S++   +  +  +P
Sbjct: 834 MSRRFGGTGLGTTISRQLVELMGGRLKVESTEGQGSCFSVELP 876


>gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
 gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
          Length = 1223

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 10/258 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++   +VT+    E  L         AD  K+ F+ ++S+E+R+P+  ++G  +LL  S 
Sbjct: 641 LIIVTDVTEMKMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS- 699

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+++Q  + + I  S   LL ++NDILD + ++AG MKL        + + +V   +
Sbjct: 700 --NLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLL 757

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--D 715
           ++   E NI + V I     G  + D  R  Q+ + ++ NA+ F+  G  +I  +A+  +
Sbjct: 758 SSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLIELSAQSAE 817

Query: 716 NGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             + I S  V+++G  IP D  +++F++F        RR  G GLGL+I    + L  G 
Sbjct: 818 ASETILSLRVEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGT 877

Query: 772 VSISSSDEGVTTINCRIP 789
           +++ S     +T    IP
Sbjct: 878 INVVSEVGKGSTFEVNIP 895


>gi|260767346|ref|ZP_05876285.1| aerobic respiration control sensor protein ArcB [Vibrio furnissii
           CIP 102972]
 gi|260617669|gb|EEX42849.1| aerobic respiration control sensor protein ArcB [Vibrio furnissii
           CIP 102972]
          Length = 781

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---LDPEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 MQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAPLNFEEFVAELESLSALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L + V  D  RL Q+   ++SNAM F+ +G  V+  +A   GDF   +  +++
Sbjct: 381 DLERLTDLPALVEVDATRLRQVLWNLISNAMKFTKEGGVVMSVSAEVEGDFANIVMDIED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            G  IPE     +F  +    S        G G+GL++    INL GG +S+SS +
Sbjct: 441 TGIGIPESELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINLMGGDISVSSEE 496


>gi|260173727|ref|ZP_05760139.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921992|ref|ZP_07918232.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695867|gb|EFS32702.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 785

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 144/270 (53%), Gaps = 17/270 (6%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +L  +  ++T+    E+ L +      ++D +K++F+ ++S+E+R+PL  
Sbjct: 383 ALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ LL +++      ++  Y   I+ +S ILL L+NDILDL+ ++AG   L Y    
Sbjct: 443 IVGFSQLLPSAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497

Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           +N  L EV ++I T +H+  ++  + ++ D +    +   D+ R++Q+ +  L+NA  F+
Sbjct: 498 MN--LGEVCRTIYT-VHKERVKEGVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFT 554

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +G  + L   R + D    VK+ G  I  +    +F RFV      Q  G GLGLSI  
Sbjct: 555 YEGE-IRLGFGRMDKDIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICR 611

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             I   GG + ++S     +T    IP +E
Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|254413818|ref|ZP_05027587.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179415|gb|EDX74410.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1229

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 11/249 (4%)

Query: 541  TFVNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             FV++T+  +AER             E    A+ IK+ F+  +S+ELRSPL  I+G+T L
Sbjct: 822  AFVDITERKQAEREHEQLLARERAAREEAESANRIKDEFLAILSHELRSPLNPILGWTKL 881

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+T +     + ++  +  I  ++TI + LV+D+LD+A +  G + L    + L   +  
Sbjct: 882  LRTRQFDPAATDKA--LATIERNATIQIQLVDDLLDVARILRGKVVLTRHRVDLAIAIKA 939

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +++       +I+I+    GK+G    D  RL Q+   +LSNA+ F+  G  V +  A
Sbjct: 940  AIETVQLAAEAKSIQIQPHFIGKVGLVEGDSGRLQQVVWNLLSNAVKFTPSGGQVEVTLA 999

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              +     +VK+ G  I  D+   +F+ F    ++   Q  G+GLGL+I    ++LHGG 
Sbjct: 1000 TVDEFAQITVKDTGIGISADILPHIFDYFRQADSSMTRQFGGLGLGLAIARHLVDLHGGI 1059

Query: 772  VSISSSDEG 780
            +   S  EG
Sbjct: 1060 IQADSPGEG 1068


>gi|170761578|ref|YP_001785677.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408567|gb|ACA56978.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 617

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
            E+ +   NE+ R+ +++   F+  +S+EL++PL  I     +L   K  + +  K+ QY
Sbjct: 340 VEKNIELLNES-REYNKLITDFLAKISHELKTPLNVIFTAVQILDLYKEDAKSYDKKEQY 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI I
Sbjct: 399 IKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINI 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSNA+ F+  G  + +       + I SVK+ G  
Sbjct: 459 IFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDNIIISVKDTGIG 518

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPE+  +++F+RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 519 IPENKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 567


>gi|152995210|ref|YP_001340045.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150836134|gb|ABR70110.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 601

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 129/241 (53%), Gaps = 14/241 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+  S +AE  L    EA  +A + K  F+  +++E+R+P+  ++G   LL    +G LN
Sbjct: 199 NLKLSEQAEE-LERAKEAAERAGQAKADFLAAMTHEIRTPMNGVLGMAQLLA---MGDLN 254

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ Q V  I+ +   L++++N+ILD + ++A  + L        +++NEVK  +A +  
Sbjct: 255 EKQKQQVTVINNAGRTLMHIINNILDYSKINAEQLALEKIPFDTRNVVNEVKLLLAPQFE 314

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  I +K  S   + SFV  D  RL QI   ++ NA  F+ KG   I  +++++      
Sbjct: 315 KKPITLKS-SIENIPSFVLGDPFRLHQILYNLVGNAFKFTEKGEISIEVSSKESDAENTV 373

Query: 719 -FIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSIS 775
              FSVK+ G  I PED  + +F +F   +H     RG GLGLSI +  + L GG +S++
Sbjct: 374 ILSFSVKDTGIGISPEDQ-EQIFEQFYQVSHFDPNIRGTGLGLSITQRLVELMGGTISLT 432

Query: 776 S 776
           S
Sbjct: 433 S 433


>gi|207744619|ref|YP_002261011.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           IPO1609]
 gi|206596025|emb|CAQ62952.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           IPO1609]
          Length = 1003

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 14/248 (5%)

Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           ERA  +  EA R+A E     K+ F+  +S+E+R+P+  ++G  +LL  + L     +Q 
Sbjct: 361 ERARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPL---EREQQ 417

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + V     SS  LL++++DILD A ++AG + +  +   L +L +     +A + HE ++
Sbjct: 418 RMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTVGLLAGRAHERSL 477

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFS 722
            ++V  D  + + V+ D  RL Q+ S +LSNA+ F+ +G    S   + AA D    I  
Sbjct: 478 SVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACVGAATDTAHLIIR 537

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G  I  +   ++F  FV       RR  G GLGL+I      L GG + + S+   
Sbjct: 538 IADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLMGGSLDMDSTPGV 597

Query: 781 VTTINCRI 788
            TT+  R+
Sbjct: 598 GTTLTLRL 605


>gi|254487835|ref|ZP_05101040.1| conserved hypothetical protein [Roseobacter sp. GAI101]
 gi|214044704|gb|EEB85342.1| conserved hypothetical protein [Roseobacter sp. GAI101]
          Length = 503

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 159/356 (44%), Gaps = 21/356 (5%)

Query: 201 SLDFLVWHRDQAGDILWANISYKK-NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE 259
           SLDF +WH D+ G +LW+N ++++ +  T+    Q      + LF  E    + S     
Sbjct: 147 SLDFPIWHTDKDGKLLWSNEAHQQLHAATDPTASQG----DQPLFATE--PALPSGRVFL 200

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNS--FGEAGIAID--VSKEITVNDQLTHTYEILHNL 315
           +N       +E G    +++ +           I I+  V  E T    +    +    L
Sbjct: 201 RN-------VESGKKDWFELSQTEQDGVICHQAICINALVQAEETQRKFVQTLTKTFAQL 253

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           ++ +AIFD+N  L   N + ++L  +   FL+  P+     + LR   K+PE  ++  W+
Sbjct: 254 SIGLAIFDRNSQLVLFNPALIDLTGLRAEFLSARPTVQTFFDKLRETRKMPEPKSYSNWR 313

Query: 376 ENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
             I  + +++    +++TW L +GQT +V    +P G T ++ E+++ +V L   +   +
Sbjct: 314 TAITEMIRAAHDGRYEETWSLDSGQTFNVKGRPHPDGATAFLIEDISAEVSLTRNFRAEL 373

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           ++    +D L +G+AVF   G +  SN A++ LW+ +         + +      R    
Sbjct: 374 ELGQSMLDTLDDGIAVFSASGILTFSNSAYQDLWQVDHETSFADVTVHDAIQDWKRKCAP 433

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              W      I  F D R++    + L + + L   I P+    T++ F  V ++V
Sbjct: 434 HLMWKEIEDFIRDFGD-RRTWHMPMYLANGTQLNCIISPIVAGATLIRFDIVKNAV 488


>gi|320008190|gb|ADW03040.1| GAF sensor hybrid histidine kinase [Streptomyces flavogriseus ATCC
            33331]
          Length = 1810

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1322 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1381

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1382 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1441

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1442 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPNAIREHLLEA 1501

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  +GD I FSV + G  I       +F  F        R+  G GLGLSI      
Sbjct: 1502 GSLRDADGDLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1561

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1562 LLGGEIHAASEPGRGSTFTLYLP 1584


>gi|300021814|ref|YP_003754425.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523635|gb|ADJ22104.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 294

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%)

Query: 545 VTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++D+V   RA   ++ A      A ++K+ F+ ++S+EL++PL  +IGF+ LL   +   
Sbjct: 22  LSDAVLRHRARVAEHSARIETELASKVKSEFIANMSHELKTPLNTVIGFSKLLTQHQERR 81

Query: 602 LNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           L  K+  +Y   I+ ++  LL+++NDILD++ + +G   ++   I L D+L +   +   
Sbjct: 82  LPDKEIVEYATLINDAAGHLLSVINDILDISKLQSGKYAIDSREINLRDILADSIDAFHH 141

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD 718
           +    +I + V     L     D  +L QIF+ +LSNA+ F+    TV +KA R  D+G 
Sbjct: 142 QSRVGDIDVDVAIAADLPLIRGDAVKLKQIFTNVLSNAIKFTPADGTVAVKAQRTADHG- 200

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I +++++G  +  D        F  V       R G GLGL I ++ + LHGG + I+S
Sbjct: 201 AIVAIRDSGVGMSPDEIDVAMAPFGQVDGGRSRWREGAGLGLPIAKALVELHGGALYIAS 260

Query: 777 SDEGVTTINCRIPSKE 792
                T +    P ++
Sbjct: 261 QQNEGTEVVITFPGRD 276


>gi|256419372|ref|YP_003120025.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256034280|gb|ACU57824.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 2037

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 16/242 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A R+L EK E L+   + K+ F+ ++S+ELR+PL +++     L  +  G+LN KQ +Y 
Sbjct: 1326 ARRSLEEKAEQLQLTSKYKSEFLANMSHELRTPLNSLLILAQQLYENHDGNLNEKQVRYA 1385

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I +    L+ L+NDILDL+ +++G +  ++  +  N++++ V+ +        ++R +
Sbjct: 1386 KTIHSCGDDLIQLINDILDLSKIESGYISTDFIKVRFNEVVSFVETTFKHISESKSLRFR 1445

Query: 671  VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAAR---------DNGD 718
            +  D +L  S   D QRL QI   +LSNA  F+ KG     I +A R         D+ D
Sbjct: 1446 IEMDEQLPQSLETDVQRLNQILKNLLSNAFKFTEKGEVKLRIYEAKRNWRLMNGSLDSAD 1505

Query: 719  FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
             +  F +++ G  I +D    +F  F        R+  G GLGLSI     +L GG + +
Sbjct: 1506 RVVAFEIRDTGIGISKDKQNIIFEAFQQAEGSTSRKYGGTGLGLSISRGLADLLGGSIEL 1565

Query: 775  SS 776
             S
Sbjct: 1566 ES 1567


>gi|254476675|ref|ZP_05090061.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Ruegeria sp. R11]
 gi|214030918|gb|EEB71753.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Ruegeria sp. R11]
          Length = 892

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 126/234 (53%), Gaps = 8/234 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R L E NE L +  + K++F+  VS+ELR+P+T+I  F+++L+ +   S  +  ++Y
Sbjct: 649 RTARKLQETNEKLTQISQQKDAFLSQVSHELRTPMTSIRAFSEILRDADHLS-ATDHTRY 707

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I   +  L  L+ND+LDL+ ++ G + LN+S   L D+L+    ++AT + + +  +
Sbjct: 708 AGIIHDEALRLTRLLNDLLDLSVLENGQVTLNFSAGRLGDVLD---HAVATALADGSADL 764

Query: 670 KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNN 726
           +V+ D          D  RL Q+F  +++NA  + +     +   A+++GD++F    +N
Sbjct: 765 RVLRDDATDDLRLSTDLDRLSQVFINLIANAEKYCTAEQPQLRIVAQESGDWLFIDFIDN 824

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           G+ IP +   ++F +F S     +  G GLGL+I    +   GG V   +  EG
Sbjct: 825 GAGIPPEYRTTIFEKF-SRVSPERAGGAGLGLAICREIMQRLGGDVGYLAGQEG 877


>gi|149277586|ref|ZP_01883727.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149231819|gb|EDM37197.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 763

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 13/249 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T    AE+ L        +A   K+ F+  +S+E+R+P+  +IGFT+LL  +     
Sbjct: 366 IDITRRKIAEQELINAKVVAEQAANAKSEFLSTMSHEIRTPMNAVIGFTNLLLQNNPAQ- 424

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q +Y+  +  S   LL L+NDILD + +  G +        L +LL +++++     
Sbjct: 425 --EQLEYLNLLKFSGENLLVLINDILDFSKIQEGKISFEMIGFNLPELLEKIRKTFMQAA 482

Query: 663 HENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-- 719
            +  + + +  D  +  S V D  RL QI   +++N++ F+S GS V +   +++ D   
Sbjct: 483 RDKGLELTLTVDQSIINSIVGDPVRLGQILINLITNSIKFTSSGS-VSIDVWKEHEDLEH 541

Query: 720 ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F + + G  I ED    +F+RF   +    R+  G GLGLSI +  I L GG +S+
Sbjct: 542 ITICFEIADTGIGIAEDRIADIFDRFTQASSDTNRKYGGTGLGLSITKQLIELQGGSLSV 601

Query: 775 SSS-DEGVT 782
           +S  +EG T
Sbjct: 602 TSKLNEGST 610


>gi|121998683|ref|YP_001003470.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
 gi|121590088|gb|ABM62668.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
          Length = 932

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 127/246 (51%), Gaps = 11/246 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QY 609
           A   L   NE L++ D++K+ FV  VS+ELR+PLT+I  F ++L  +    +++ Q  ++
Sbjct: 663 ATEELRAANERLKELDQLKDEFVSMVSHELRTPLTSIRAFGEILLNNP--EMDADQRREF 720

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNI 667
           +E +   S  L  L+N +LDL+ +++G  +     + L+ L  E  +S        +  +
Sbjct: 721 LEVVVRESERLTRLINQVLDLSKIESGSAQWQLEDVDLSRLAREAAESTQQLFTDRQTQL 780

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI-FSVKN 725
            I++ SD    +   D  RL+Q+   +LSNA  F+  G   V L+  +  GD +  SV +
Sbjct: 781 HIEIASDDN--AIKGDPDRLMQLIINLLSNAAKFTEPGEGQVWLRLEKGRGDTLRLSVTD 838

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  I  +  + +F++F  +S    G+ +G GLGL+I     + H G + + S      +
Sbjct: 839 NGPGISAEDQRRIFDKFHQISQQQAGKPKGSGLGLAICRLIADAHWGTLWVDSEPGAGAS 898

Query: 784 INCRIP 789
             C++P
Sbjct: 899 FVCKLP 904


>gi|242280945|ref|YP_002993074.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123839|gb|ACS81535.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 758

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 12/233 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER +  K EA   A+  K+ F+ ++S+E+R+PL  I+G   +L+  ++G +N KQ +   
Sbjct: 369 ERLIAAKLEA-ESANIAKSEFLANMSHEIRTPLNGIMG---MLQLMRMGEMNQKQEEQCG 424

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +   S   L  L+ DILD+  +++G +++  +   L++ LN V+        + NI ++V
Sbjct: 425 FAMESCKRLNKLLGDILDITRIESGHLQIVDAEFDLHNALNSVQALFKPAAIQKNIDLRV 484

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDF--IFSVKN 725
              G +  + + D  RL QIF+ ++ NA+ F+  G  ++     D   NG +  +FSV +
Sbjct: 485 EIAGNVPKTMIGDINRLHQIFNNLIGNALKFTDSGFVLVEAYLLDRNQNGSYHILFSVSD 544

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +G  I +    S+FN F  +  +      G GLGL+IV+  + L GG +SISS
Sbjct: 545 SGIGIEDSKLDSIFNSFTQIETSRTRNYEGAGLGLAIVKQLLELMGGTLSISS 597


>gi|254452843|ref|ZP_05066280.1| sensory box histidine kinase/response regulator [Octadecabacter
           antarcticus 238]
 gi|198267249|gb|EDY91519.1| sensory box histidine kinase/response regulator [Octadecabacter
           antarcticus 238]
          Length = 734

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 135/256 (52%), Gaps = 11/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++  V+AE AL    +    ++++K  F+  +S+E+R+PL  ++G   LL+ +   +L 
Sbjct: 228 DISRRVKAEAALVTARDKALASEKMKTEFLTTMSHEIRTPLNGLLGSMALLRDT---ALT 284

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+ Y+  S  +LL+ V+++LD+ + D G +  N   + +++L+ ++  S +    
Sbjct: 285 ENQDRYISYMETSGRLLLSHVSNVLDITSYDVGKLNTNIEPMNISELMQDIVDSQSGTAF 344

Query: 664 ENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDF 719
            N   +    +G K+    +D +RL  +   ++ NA+ F+  G   ++  +    D    
Sbjct: 345 TNKTSLVWGWNGPKMDWIFSDHERLQHVMMNLVGNAVKFTRCGKVSVMIESFGKSDGARL 404

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS- 776
             S+ + G  + ED+ K VF+ FV+   A+  +  G GLGLSI + F+N  GG + + S 
Sbjct: 405 RISIADTGQGMTEDLAKRVFDDFVTGNTAYDREVGGTGLGLSIAKRFVNALGGEIGVRSI 464

Query: 777 SDEGVTTINCRIPSKE 792
            DEG +T    +P +E
Sbjct: 465 VDEG-STFWFELPVRE 479


>gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp.
           Marseille]
 gi|151282535|gb|ABR90945.1| sensor histidine kinase/response regulator [Janthinobacterium sp.
           Marseille]
          Length = 1096

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 8/247 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R + AL    EA   A++ K  +V  +S+ELRSPL +I+G++ +L  ++   L++     
Sbjct: 628 RTDAALQSAKEAAESANQAKTRYVAGISHELRSPLNSILGYSQILLKNE--QLDAAPRTA 685

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S   LL LV+++LDLA ++A  M+L  + I+    ++++   +  +     +R+
Sbjct: 686 IQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAAFIDDLLSMVRPQAEAKGLRL 745

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +    G L  +V AD +RL QI   +L+NA+ F+  GS V L          F V + G 
Sbjct: 746 QYTHGGDLPHYVLADGKRLRQILINLLTNALRFTDTGS-VTLHVECTGVSMRFDVIDTGI 804

Query: 729 SIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            I     + +F  F   A    RG+  G GLGL+I E  I +  G +++ S+    +T  
Sbjct: 805 GIAVQDRQRIFQPFERGAAGRLRGE-PGAGLGLAITEKLILMMNGSLNLISTQGQGSTFV 863

Query: 786 CRIPSKE 792
            R+P  E
Sbjct: 864 VRLPLME 870


>gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055]
 gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger
           B]
 gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum]
 gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           Australia 94]
 gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI]
 gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 587

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|317478708|ref|ZP_07937862.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905138|gb|EFV26938.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 644

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E AL E  +   ++  +K++F+ ++S+E+R+PL  I+GF+D+L  S  G+   +Q  Y 
Sbjct: 407 SEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVL--SAGGASEEEQRGYF 464

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +S +LL L+NDILD++ ++A  + L+  +  +  +  +V  S+A      N +  
Sbjct: 465 EIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVAQARRSTN-QFL 523

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGS 728
              + ++     D QRL Q+   +LSNA  F+ +G T+ LK   D      +FSV + G 
Sbjct: 524 FECEREVVEMRTDVQRLQQVVINLLSNADKFTKEG-TITLKLEPDTARNVAVFSVTDTGC 582

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            IP D  K VF RF       Q  G GLGLSI +  +   GG + I  +
Sbjct: 583 GIPLDKQKRVFERFEKLNEYVQ--GTGLGLSICKLTVEKWGGEIWIDPA 629


>gi|315646641|ref|ZP_07899758.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315277967|gb|EFU41288.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 484

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 129/231 (55%), Gaps = 9/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622
           +++++K+ F+  +S+ELR+PLT+I G+++ L +   G  + ++++  ++ I+  +  L+ 
Sbjct: 240 RSNQVKDDFISSISHELRTPLTSIKGWSETLDS---GGYDPEETKIGMQIITKETDRLIG 296

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + +    MKL    + L +LL E+  ++ TK  +  I+IK++SD K      
Sbjct: 297 LVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKKGIQIKLVSDEK-PIIYG 355

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+F  I+ NA+ FS +   + L    +    I +VK++G  I ++  + V +RF
Sbjct: 356 DANRLKQVFLNIVDNAVKFSHENGAINLSFTIEEKFVIVTVKDHGIGISDEHLRRVKDRF 415

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              N   G   G GLGL+I +  I LHGG + + S     T++  ++P  E
Sbjct: 416 FQVNPLNG---GTGLGLAITQQLIELHGGAMEMESELGQGTSVIVKLPLPE 463


>gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 587

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|83747379|ref|ZP_00944419.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551]
 gi|83725966|gb|EAP73104.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551]
          Length = 1000

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 14/248 (5%)

Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           ERA  +  EA R+A E     K+ F+  +S+E+R+P+  ++G  +LL  + L     +Q 
Sbjct: 358 ERARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPL---EREQQ 414

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + V     SS  LL++++DILD A ++AG + +  +   L +L +     +A + HE ++
Sbjct: 415 RMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTVGLLAGRAHERSL 474

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFS 722
            ++V  D  + + V+ D  RL Q+ S +LSNA+ F+ +G    S   + AA D    I  
Sbjct: 475 SVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACVGAATDTAHLIIR 534

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G  I  +   ++F  FV       RR  G GLGL+I      L GG + + S+   
Sbjct: 535 IADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLMGGSLDMDSTPGV 594

Query: 781 VTTINCRI 788
            TT+  R+
Sbjct: 595 GTTLTLRL 602


>gi|330822034|ref|YP_004350896.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327374029|gb|AEA65384.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 619

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 12/230 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LTE+    R+ D +K+ F+  VS+ELR+PLT++ G  DLL     G L +   + V+ 
Sbjct: 255 RDLTEQ----RRLDRLKDDFLSTVSHELRTPLTSVKGAVDLLAGGAAGELPAPAQKLVDI 310

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKV 671
              +   L  L++D+LD+A ++A  M L      L+ L++E   ++A  + +   + + +
Sbjct: 311 ARRNGERLGRLIDDVLDVAKLEADRMTLQRRACALDALVDE---ALAANLDYARRVGVTL 367

Query: 672 ISDG-KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              G   G  V  D  R LQ+ + +LSNA+  S  GS V ++ A D      +V+++G  
Sbjct: 368 TRVGAPFGCEVWVDPDRFLQVMANLLSNAIKNSPAGSAVEIRGATDGARARIAVRDHGGG 427

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           IPE     +F +F     R +R   G GLGL I +  +    G V + S+
Sbjct: 428 IPEAFRARIFEKFSQADERDRRVGTGTGLGLHITQVLVERMHGTVGLVST 477


>gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. 493-89]
 gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. H 2687]
          Length = 949

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  + +        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|299149224|ref|ZP_07042284.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512658|gb|EFI36547.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 541

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 143/258 (55%), Gaps = 12/258 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++S+E+R+PL  I+GF++++  + 
Sbjct: 288 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 346

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+  ++   +N+L+  + + +
Sbjct: 347 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 404

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
             K    +I+I             DR RL Q+     +NA+ F+ KGS  +   ++ A+D
Sbjct: 405 QEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 464

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  F VK+ G  IP D    VF RFV  N+     +G GLGL+I    +   GG + +
Sbjct: 465 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 519

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   +    RIP  E
Sbjct: 520 ESKEGEGSRFWFRIPRSE 537


>gi|297583439|ref|YP_003699219.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141896|gb|ADH98653.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 466

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 8/233 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL   DE K +F+Q++S+ELR+PL+ I G+++LL+        S  S+Y   I   +  +
Sbjct: 234 ALDTEDEKKRAFIQNISHELRTPLSYIQGYSELLENQ--CREQSANSEYAVIIHREAHRM 291

Query: 621 LNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
             LVN ++DL  ++     +L++S +VL++++ E  ++   K  +    + + + DG + 
Sbjct: 292 NRLVNQLIDLTKLEKVERTELSFSPLVLSEIIEEAARNTKLKRSDKEQSLTLNLDDGLIV 351

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           + + DR  LLQIF  +L NA  ++  G  + + A    G    +V++NG  IP++    +
Sbjct: 352 NGIEDR--LLQIFINLLDNASSYTGSGGHITVSAIEKIGMASITVEDNGQGIPKEQIPFL 409

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             RF  V  +   ++ GVG+GLSIV+  + LH G +   S +   T +   IP
Sbjct: 410 TERFFRVEKSRTREKGGVGIGLSIVKQIVELHDGDIHFESEEGTGTAVTIDIP 462


>gi|226358140|ref|YP_002787879.1| histidine kinase, classic [Deinococcus deserti VCD115]
 gi|226319783|gb|ACO47777.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 423

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 10/247 (4%)

Query: 547 DSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           D + A+ A LT +++ALR A+E  ++F   VS++LR+PL +I GF  LL+ S    LN K
Sbjct: 177 DVLEAQHAELTLRSDALRMANEELDAFAMSVSHDLRAPLRHITGFLGLLRRSLDAPLNEK 236

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y+  +  ++T +  L++ +LDL+      ++L  + + + DLL  V+ ++     + 
Sbjct: 237 SERYLNLVDEAATRMNTLIDAMLDLSRTSRQTLRL--TQVNVGDLLASVQTTLQPDTAQR 294

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDN-GDFIFSV 723
            +   V   G L    AD   L Q+   +LSNA+ +S  +  T I  AA++  G+++F V
Sbjct: 295 RVTWTV---GPLPVVTADADLLRQVLVNLLSNALKYSQPREETHITVAAQERPGEWVFQV 351

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            +NG          +FN F    HR     G+G+GL+ V   I  HGG V   S +E   
Sbjct: 352 TDNGVGFDPRYADKLFNVF-QRLHRPDAFEGIGVGLANVRRIILRHGGRVWAESQEEQGA 410

Query: 783 TINCRIP 789
           T +  +P
Sbjct: 411 TFSFSLP 417


>gi|21233072|ref|NP_638989.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770012|ref|YP_244774.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21114924|gb|AAM42913.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575344|gb|AAY50754.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 630

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 12/243 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYIS 614
           + +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL +  + G  N K    +  I+
Sbjct: 239 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKG---LSVIA 294

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVI 672
           +S+     L++D+LDL+++  G ++L   ++ L + + E    Q    +  +  +++ V 
Sbjct: 295 SSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEPVAEGKDQVLQLHVP 354

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L   + D  RL Q+F  +LSNA+ F+     + +    D+G FI SV+++G  I  
Sbjct: 355 PTPCL--VLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEHDDGHFIVSVRDSGDGIAS 412

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T   R+P
Sbjct: 413 EFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 472

Query: 790 SKE 792
             +
Sbjct: 473 EHQ 475


>gi|332705649|ref|ZP_08425725.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332355441|gb|EGJ34905.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 953

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 123/231 (53%), Gaps = 20/231 (8%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K+ F   VS+ELR+PLT+I G  +LL T  +   + +  + +   + S+  L+ LVN
Sbjct: 698 ERMKDEFTSVVSHELRTPLTSIHGALNLLSTGLIQPQSERGQRVIGIAADSAERLVRLVN 757

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVA 682
           DIL+L  +++G ++L+   +   +L+ +    +    +   I+++V S   + S   F A
Sbjct: 758 DILELERLESGKIRLSKQPVNAAELMVKAVDQVQVMANRAGIKLEV-SPQAIESEIEFEA 816

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------RDNGDFIFSVKNNGS 728
           D  R++Q+ + +LSN + FS +GS++ L                  ++   +F+VK+ G 
Sbjct: 817 DSDRIIQVITNLLSNGIKFSDRGSSLWLTVELQHPEELETTSPLDPNSATILFTVKDQGR 876

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            IP D  +S+F RF  V  +   ++ G GLGL+I  + +  HGG + + S+
Sbjct: 877 GIPADKLESIFGRFQQVDASDARKKGGTGLGLAICRNIVEQHGGKIWVEST 927


>gi|330811212|ref|YP_004355674.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379320|gb|AEA70670.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 916

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 17/243 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786
                +++F  F    N+   Q  G GLGL I +  +   GG + + S+  EG    I+ 
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISL 508

Query: 787 RIP 789
           R+P
Sbjct: 509 RLP 511


>gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
 gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
          Length = 587

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|189910030|ref|YP_001961585.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774706|gb|ABZ93007.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 607

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 132/260 (50%), Gaps = 12/260 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L + +T+L  +N T     ++ L E  E    A   K+ F+  +S+E+R+PL  +IG T 
Sbjct: 273 LNDNKTILNSLNTT-----QKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQ 327

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  +    L+++Q  Y++ I+ +   LLN++NDILD + +DAG + +  +   L +L+ 
Sbjct: 328 ILFET---DLDAEQKSYLKTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVR 384

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           E+    A + +   +  K  I+       V+D  R+ QI   ++ NA+ F+  G  VIL 
Sbjct: 385 EIFDLFAIEANTKQLEFKFEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTETG-FVILS 443

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             ++    +F +K++G  I  +   S+F +F  V  +   +  G GLGL+I E  + L  
Sbjct: 444 IKKEEHSILFQIKDSGIGISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLE 503

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S     +T  C  P
Sbjct: 504 GKIGVESVKGVGSTFWCSFP 523


>gi|281355936|ref|ZP_06242429.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317305|gb|EFB01326.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 835

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 13/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T V+VT+    E  +    +    A+  K++F+  +S+E+R+PL  IIGF+++LK     
Sbjct: 434 TLVDVTNRKETEAKIRGSLKEAEVANRAKSTFLATMSHEIRTPLNAIIGFSEILKNE--- 490

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++  + VE I+A+   LL L+ND+L+++ +DA  +++ Y  I L  +L +V +    
Sbjct: 491 GLPAEALESVEAINAAGESLLALINDVLEISKIDADKLEIIYGWIRLETVLGDVGRIFEP 550

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DN 716
           ++ +  + +++     L  F     RL QI   +L NA+ F+  GS  ++ A R    + 
Sbjct: 551 QLRQKQLALRMEIPSSLPEFHFSASRLRQILYNLLGNAVKFTVSGSVTVMAAVRKGTGNQ 610

Query: 717 GDFIFSVKNNGSSI-PEDMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
            +   +V + GS I PED  K +F  FV     +A      G GLGL+IV        G 
Sbjct: 611 AELEIAVTDTGSGITPEDQ-KKIFEPFVQSRTGDAGGDASEGTGLGLAIVRRLAEKMNGE 669

Query: 772 VSISS 776
           V + S
Sbjct: 670 VLLES 674


>gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
 gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
          Length = 949

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    S
Sbjct: 444 LVDVSARVKMEESLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---S 500

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L       V  ++ SS++LL +++DILD + +++  +++        +++  +  +    
Sbjct: 501 LPQGVESLVTAMNNSSSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHISSNYLAM 560

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    D  +  +   D  RL Q+ S +L+NA+ F+  G  +IL+    +G   
Sbjct: 561 VVKKRLTLWCFIDSDVPVTLDGDPLRLQQVISNLLNNAIKFTHTGG-IILQVFVKDGYLA 619

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  IP      +F+ F    +  QR  +G GLGL+I E  IN+  G + + S  
Sbjct: 620 FRVRDTGVGIPAKEITRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEP 679

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 680 GMGSQFVVRIP 690


>gi|42523313|ref|NP_968693.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575519|emb|CAE79686.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 720

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 15/241 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NVT+ V AERAL     A   A++ K++F+ ++S+E+R+PL  I+GF +++ T  L    
Sbjct: 324 NVTEQVMAERALQAAKSAAENANQAKSAFLANMSHEIRTPLGVILGFAEIIGTQDLD--E 381

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S++  Y E I  +   L  +++DILDL+ ++AG  ++  S + L  LL EV      +  
Sbjct: 382 SERKNYFEIIHRNGLSLTRIIDDILDLSKIEAGKFEIEKSPVKLKKLLQEVLTMFFDQAS 441

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARD 715
             NI +     G++   +  +D  R+ Q+   ++ NA+ F+ KGS  +      + A R 
Sbjct: 442 RKNIYLN-YELGEIAPLIILSDVVRIRQVLVNLIGNAIKFTMKGSVKVSCRAEQVTATRK 500

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
               +FS+++ G  + ++  + +F  F        R+  G GLGL++  +     GG VS
Sbjct: 501 K--IVFSIEDTGIGMTQEQAERLFQPFTQADATSTRQFGGTGLGLALSRNLARALGGDVS 558

Query: 774 I 774
           I
Sbjct: 559 I 559


>gi|172058670|ref|YP_001815130.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991191|gb|ACB62113.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 847

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD +K  FV  VS+ELR+PL++I GFT+L+   ++     KQ +Y+  I + +  L  L
Sbjct: 613 EADRMKEEFVSTVSHELRTPLSSIYGFTELMLNREIDP--PKQRKYLTTIHSETGRLTTL 670

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-- 681
           VND LD+  +++   +   +T  L  L  E+        H+ +     +S   +G  +  
Sbjct: 671 VNDFLDVQRMESSEQRYQMATFDLVQLAAEL-----IDFHDASHTTHELSFEAVGPIMID 725

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +++ Q+ + +LSNA+ +S  G  V ++    +G    ++++ G  IP++    +F++
Sbjct: 726 ADAEKIKQLLNNLLSNAIKYSPDGGNVAIRIENHDGFAEITIRDQGIGIPQEAMSKLFDK 785

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V N+   +  G GLGLSI +  +  H G + + S+    +T   R P
Sbjct: 786 FYRVDNSETRKIGGTGLGLSICKEIVKHHNGTIDVESTIGAGSTFTIRFP 835


>gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  + +        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|153870479|ref|ZP_01999873.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152073056|gb|EDN70128.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 660

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 124/241 (51%), Gaps = 10/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  RAE  L +  E    A++ K +F+ ++S+ELR+PLT I+G+  LLK  K   L 
Sbjct: 379 DITERKRAEAELFKSKELAESANQAKTAFLTNMSHELRTPLTAILGYAQLLKQDK--RLT 436

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q + ++ I  S   LL L++DILDL+ ++AG ++L  S   L  L  ++ +    +  
Sbjct: 437 DEQREGIQIIYRSGEHLLTLISDILDLSKIEAGKLELVPSDFHLPTLFQDIVELFGIRFE 496

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDN 716
           +  I +      +L     ADR+RL QI   ++SNA+ F+  G   +      +   ++ 
Sbjct: 497 QKGIELVYEPLSELPRAAHADRKRLRQILLNLVSNAIKFTETGQVSLKVQYTPIPDNKNQ 556

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSIS 775
           G     V+++G  I     + +F  F    ++     G GLGLSI ++ + + GG + + 
Sbjct: 557 GKMRVDVEDSGIGIAAAHLEKIFLPFQQVGNKMYYSEGTGLGLSITKTLVEMMGGQLQVK 616

Query: 776 S 776
           S
Sbjct: 617 S 617


>gi|154483202|ref|ZP_02025650.1| hypothetical protein EUBVEN_00903 [Eubacterium ventriosum ATCC
           27560]
 gi|149736010|gb|EDM51896.1| hypothetical protein EUBVEN_00903 [Eubacterium ventriosum ATCC
           27560]
          Length = 899

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 142/270 (52%), Gaps = 6/270 (2%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPL 584
           E  + P  N+  +        ++  E+   EK EA  L K ++++ + ++ +S++LR+PL
Sbjct: 627 EIPLDPFENSILLSILGECALALENEKNAREKQEAAILAKNEQLRANLLRAISHDLRTPL 686

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T+I G    L ++     N  + Q   YI   S  L+NLV ++L +  ++ G + L  + 
Sbjct: 687 TSISGNASNLLSNGDSFDNDTKKQLYMYIYDDSMWLINLVENLLAVTRIEEGRLNLRITE 746

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            +++D++ E    I  K  E++I ++   +  L     D + ++Q+   I+ NA+ ++ K
Sbjct: 747 DLMDDVITEALHHINRKSEEHHISVESKEEFLLAKM--DAKLIVQVIINIVDNAIKYTPK 804

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
            S ++++  +     I S+ ++G+ I +++   +F+ F S A++    RR +GLGLS+ +
Sbjct: 805 NSHIVIRTEKQGKQAIVSISDDGNGIADEIKPRIFDMFYSGANQIADSRRSLGLGLSLCK 864

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           S IN HGG +++S +    T     +P+ E
Sbjct: 865 SIINAHGGELTVSDNLPHGTVFTFTLPAGE 894


>gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
 gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
          Length = 1109

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 10/243 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            V++T   ++E+ L E   +   A+  K+ F+ ++S+E+R+P+  ++G T LL+T+    L
Sbjct: 843  VDITHRKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGMTHLLRTT---DL 899

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              +Q QY+  I  S+  L  L++DILDL+ +++G M L  +   L   + ++  S    +
Sbjct: 900  TPEQEQYLANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSCIQDILSSQQFFI 959

Query: 663  HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
             +  IR+   I+D    + + D+ R  QI   IL NA+ F+ +G   I+    +  D   
Sbjct: 960  QQKAIRVTTEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQGQINIVAELVEQHDRDI 1019

Query: 719  -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                ++++ G  + E + + +F  FV       RR  G GLGL+I     +L GG + + 
Sbjct: 1020 HVRMAIRDTGIGMSEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRRLADLMGGRIWVE 1079

Query: 776  SSD 778
            S +
Sbjct: 1080 SRE 1082


>gi|262198290|ref|YP_003269499.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262081637|gb|ACY17606.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 837

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++K  F  +VS++LR+PLT I+G   L K ++  +L + Q Q +E    S+  LL 
Sbjct: 144 RELEQLKTEFFANVSHDLRTPLTLIMG--PLQKLAQAENLLAGQRQDIEVALRSANTLLG 201

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            +NDILD+A +DAG +  +Y++  L+ L+ E          E  I + + ++  L + + 
Sbjct: 202 RMNDILDVARLDAGELSPSYASCELDALVREAASHFDVMAGEREIDLSIEAEETLVAEL- 260

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D   + ++   +++NA + + +G  +     R +G+ +   V ++G  +P D    +F R
Sbjct: 261 DPSSIQRVLLNLMANAFEHTPRGGRIRCSLERISGERVRIEVADSGPGVPPDKRSQIFQR 320

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F     +G+RR     GLGL+I + F+ LH G + +  + EG       +P +
Sbjct: 321 FQRGEAQGERRFDSSSGLGLAICKDFVLLHRGRIVVLEAPEGGALFRIELPRR 373



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 121/252 (48%), Gaps = 15/252 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + D++ + R   E+ E   +A ++K+ F+  V++ELRSPL ++      L+  +L  +++
Sbjct: 571 LQDALESTRVAREQAE---QASQLKSDFLGMVTHELRSPLASLA-----LQLERLDMMDA 622

Query: 605 KQSQYV----EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +  V    + +++S   L +L+  +L+   V  G +++      L+ L+ ++   +  
Sbjct: 623 NPAPAVHTLRQRMNSSIGRLSSLIESLLEYVRVQRGHLEVRPERFDLHLLVTDLVDDLKI 682

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +  +  + + +  +G+L   ++D + +      ++ NA+ F+ +GS  +  +  D    I
Sbjct: 683 QAEDKRLELSLRCEGRLPQLLSDMRLVRLAVLNLVGNAIKFTDEGSIAVALSYADERHLI 742

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  IP++    +F  F  +    +    GVGLGL++V   +    G +++ S  
Sbjct: 743 -AVSDTGPGIPDEAQHRIFQPFEQMVTTRKKHLPGVGLGLALVREMVTSVNGTIALESKV 801

Query: 779 EGVTTINCRIPS 790
              +T    +P 
Sbjct: 802 GVGSTFRIALPP 813


>gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus
            degradans 2-40]
 gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 1526

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            V  ER++  +   L++ D++K+ F+ + S+ELR+PL  I+G  + L     G L+ K  Q
Sbjct: 855  VEQERSVVRR---LKQLDKLKDEFLANTSHELRTPLNGIVGLAESLMDGVTGPLSHKTKQ 911

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             +  I +S   L  LV+D+LD A +    M LN   + ++ L++ V       +    I 
Sbjct: 912  NLAMIVSSGKRLAGLVDDLLDFAQLKHRGMALNKKAVDIHVLVDVVLSLTLPIIGAKPIE 971

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +      +L    AD  RLLQI   ++ NA+ F+ +GS V + A     +   SV + G 
Sbjct: 972  LVNNVSKQLPKVAADESRLLQILHNLVGNAVKFTDEGS-VTISAEVQGEEICISVADTGI 1030

Query: 729  SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +PE+  + +F+ F  +  A      G GLGLS+ +  + LHGG + + S+
Sbjct: 1031 GVPENRFEEIFDSFRQLEGASNRVYGGTGLGLSVTKQLVELHGGTIGVRST 1081


>gi|269926600|ref|YP_003323223.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790260|gb|ACZ42401.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 579

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASST 618
           EA ++AD++++  +  VS+ELR+P+  I GF   LK +    +  +  Q ++  I  ++ 
Sbjct: 345 EAAKEADKLRSQLLGTVSHELRTPIAAIQGFASSLKCADEVEIPKEMQQDWINEIEQNAE 404

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  LV D+LDL+ +++G +++      +ND+L+E+   +       N+ ++V SD  L 
Sbjct: 405 RLRRLVTDLLDLSRLESGALRMQMEWQDMNDVLDELAPDLQMIAEGRNLVVQV-SD-TLP 462

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D +R+ Q+   ++ NA  FS  GS +++ A R        V + G  IP +    +
Sbjct: 463 LIKCDAERIGQVLRNLVENARKFSPPGSNIVVGAERYENGIRVGVLDEGEGIPPEYHDKI 522

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F RF  +  A    ++G GLGL+I  + +  HGG + + SS
Sbjct: 523 FERFFQIEGASFRPQKGTGLGLAICRNIVEAHGGRIWVESS 563


>gi|325274858|ref|ZP_08140873.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324100006|gb|EGB97837.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 917

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   +  +Q  Y+  I  S+
Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLSTIEKSA 331

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   +  + ++    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDT 391

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731
             S V D  RL QI + ++SNA+ F+ +G T++++A       D+     SV++ G  + 
Sbjct: 392 PTSLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLDDEHEDHAQLRISVQDTGIGLS 450

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDST 498


>gi|293373302|ref|ZP_06619660.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292631698|gb|EFF50318.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 502

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 143/258 (55%), Gaps = 12/258 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++S+E+R+PL  I+GF++++  + 
Sbjct: 249 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 307

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+  ++   +N+L+  + + +
Sbjct: 308 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 365

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
             K    +I+I             DR RL Q+     +NA+ F+ KGS  +   ++ A+D
Sbjct: 366 QEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 425

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  F VK+ G  IP D    VF RFV  N+     +G GLGL+I    +   GG + +
Sbjct: 426 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 480

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   +    RIP  E
Sbjct: 481 ESKEGEGSRFWFRIPRSE 498


>gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
 gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
          Length = 949

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  + +        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|157374892|ref|YP_001473492.1| sensor protein LuxQ [Shewanella sediminis HAW-EB3]
 gi|157317266|gb|ABV36364.1| sensor protein LuxQ [Shewanella sediminis HAW-EB3]
          Length = 583

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 139/262 (53%), Gaps = 11/262 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKN-EALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +L F ++  S    +AL  +  E  R+A+        FV  +++ELR+PL+ ++G  D
Sbjct: 182 KQLLLFCDMLHSAYQRQALLNRTLEEKRRAEYSERTARDFVAMINHELRTPLSGLLGSAD 241

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L++ +++    + Q Q ++ +  S  +L  ++ND+LD++ ++AG++K+  +      L +
Sbjct: 242 LMRDTQM---TAHQQQLLKTMHQSGELLEVIINDLLDISKMNAGMLKIIDTKFSPEQLCS 298

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            ++    TK  E  +  ++  D  + +  + D  R+ Q+F  ++ NA+ F+ +G  + +K
Sbjct: 299 MIQNIFTTKTAELGLAFELTFDEHIPARLLGDPDRIKQLFVNLIGNAIKFTDQGK-ISVK 357

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHG 769
                  F F++ ++G  IP+D    +F  FV  +NA      G GLGL+I +  ++   
Sbjct: 358 VDWVQEMFHFTISDSGCGIPKDKLAHIFEPFVQVNNASNRPHEGTGLGLAICKLLVDEMK 417

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +S+ SS++  T  + R+P K
Sbjct: 418 GEISLESSEDEGTQFSVRLPLK 439


>gi|262275800|ref|ZP_06053609.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219608|gb|EEY70924.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1085

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 133/258 (51%), Gaps = 20/258 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L  + E    A + K  F+  +S+E+R+P+  +IG  D+L  SKL   +  Q   
Sbjct: 394 QAREQLLYQKELAESASKAKAQFLAAMSHEIRTPMNGVIGMIDILLRSKL---DMSQMSI 450

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              +  S+  LL+++NDILD + ++AG M+++  T+ L  +  +V  ++AT+  E N+ +
Sbjct: 451 ANTVRESALSLLSIINDILDFSRIEAGKMRIDNVTLSLRQIAEQVMDNLATEAVEKNVSL 510

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-NGDFI 720
            + +S     S   D  R+ QI   I+ N + FS   S        +    A+D N    
Sbjct: 511 TLFVSPDVPSSLCGDPTRIKQILFNIIGNGIKFSGGQSHRGEVQVWITADIAKDGNAKIS 570

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             +++NG  I +D  +S+F  F+   +   RR  G GLGL+I  +  +L GG ++ ++S+
Sbjct: 571 IEIRDNGIGISQDKLESIFRPFMQAEYSTTRRYGGSGLGLAISRNIASLMGGTIT-ANSE 629

Query: 779 EGVTT-----INCRIPSK 791
           EG+ +     ++ R+P +
Sbjct: 630 EGIGSTFTVNLHLRVPEE 647


>gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
 gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
          Length = 575

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTIL 620
           L++ ++++  FV +VS+EL++PLT+I GF++ LL  +K   +   + Q+++ I   +T +
Sbjct: 346 LKRLEKMRKDFVANVSHELKTPLTSIRGFSETLLDGAK--EVPELRDQFLDIIQKEATRM 403

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+L+L+ ++    ++   ++ LN L++EV   ++ K  + +I+++   +G +   
Sbjct: 404 QMLVEDLLELSRLERDDFQMELVSVDLNQLVDEVCLLLSQKASKKSIQLEAKHEGTV-VL 462

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  R+ Q+   +++NA+++S +GS V +        +   VK+NG  I E     +F 
Sbjct: 463 QADLNRMKQVIMNLVANAINYSPEGSRVEIAVEAKADSYKLRVKDNGIGIAEKEVSRIFE 522

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A      G GLGL+IV+  I+LH   + + S +   TT     P
Sbjct: 523 RFYRVDKARSRNSGGTGLGLAIVKHIIDLHHATIDVESEEGKGTTFTITFP 573


>gi|172039664|ref|YP_001806165.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171701118|gb|ACB54099.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 765

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 132/255 (51%), Gaps = 16/255 (6%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLG 600
           E+ + E+ + LR        A+  K+ F+ ++S+ELR+PLT IIG +  L    + S   
Sbjct: 366 EQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESTTL 425

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ KQ +Y++ I  S   LL+++N+IL+ + + +G   L      L  +   V Q ++ 
Sbjct: 426 PLD-KQQKYLQTIQNSGKHLLDMINEILEYSNLQSGKYVLAVREFSLTKVAKNVIQRVSD 484

Query: 661 KMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           +      N+ + +  + +  SF AD +R+ QI   +L+NA+ F+ +  +V L+  R+N  
Sbjct: 485 EAEHRRINLELDLQINQQQDSFYADPERVQQILYHLLNNALKFTPENGSVTLRIWRENNH 544

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V++ G  I E+    +F  F  + N+ R    G GLGL++ +  + LHGG + + S
Sbjct: 545 VSLEVEDTGIGIQEEKIPLLFESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVES 604

Query: 777 SDEGVTTINCRIPSK 791
                +T   R+P++
Sbjct: 605 IINQGSTFIIRLPNQ 619


>gi|115376143|ref|ZP_01463387.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366866|gb|EAU65857.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 774

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 8/241 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQY 609
           A+RA  E  EA R    +K+ F+  +S+ELR+PLT+I+G+T  LL+   L     ++   
Sbjct: 393 AQRAQQEAQEANR----LKDEFLATLSHELRTPLTSILGWTQMLLRRDDLDEAGRRRG-- 446

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  ++ +   LV D+LD++ + AG + L+   + L ++++   +S+        + +
Sbjct: 447 LETIERNARVQRQLVEDLLDVSRIAAGKLTLDLREVKLREVVDAALESVRPTAEARGVVL 506

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +        S +AD  RL Q+   +L+NA+ F+ +G  V L+A R+      +V + G  
Sbjct: 507 QAAPGEVSESVLADSTRLQQVLWNLLTNALKFTERGGCVRLEARREEAFVALTVSDTGKG 566

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
           I       VF RF          G+GLGL+IV + + LHGG V + S   G   T   R+
Sbjct: 567 IEAGFLPHVFERFRQGNTGRGHGGLGLGLAIVRTMVELHGGTVDVHSDGPGTGATFTVRL 626

Query: 789 P 789
           P
Sbjct: 627 P 627


>gi|149276653|ref|ZP_01882796.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232322|gb|EDM37698.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 828

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 173/382 (45%), Gaps = 27/382 (7%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           TI + ++     +L+ ++N +++        + +G+      G+    N    ++     
Sbjct: 156 TIHLGQHYYALEELKVRFNAILQT-------VEQGIVFIDDSGKNSWINEPAAAILGISG 208

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             + P      +    SR  N+ + +     I TS D   K+ Q         VL     
Sbjct: 209 GNVPPAELSAAMQQLRSRADNKEEIFRRGMEIFTSADKRVKNWQWIFSTPETYVLNVCCT 268

Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKN----EALRKADE---IKNSFVQHVSYELR 581
           P  +      + TF ++T     +  L E N    E  R ADE    K+ F+ ++S+E+R
Sbjct: 269 PTISEHISGMLWTFDDITQQYLYDEHLKELNVQLEEKSRIADEQNKAKSEFLANMSHEIR 328

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  +IG T LL+ ++L   +  Q  +VE I  S+  LL ++N+ILD + +++G ++L 
Sbjct: 329 TPMNGVIGMTSLLRNTRL---DEDQFDFVESIRISADALLEIINEILDFSKIESGKLELE 385

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
               VL+ ++ E    ++ K  E ++ +  I D  +    + D  RL QI   ++ NA+ 
Sbjct: 386 EHPFVLSKIVEETYDLLSFKAQEKDLDLLYIIDPDVPYEVIGDMTRLRQIIVNLVGNAIK 445

Query: 701 FSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           F+ +G    S  +L+      +  FSV+++G  IP+D    +FN F  V ++   +  G 
Sbjct: 446 FTDEGEILTSIKLLEKKGSTYELEFSVQDSGIGIPQDKMHKLFNSFSQVDSSTTRKYGGT 505

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLGL I    I    G + + S
Sbjct: 506 GLGLVISARLIQKMNGRIWVES 527


>gi|116328265|ref|YP_797985.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116121009|gb|ABJ79052.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 839

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYV 610
           E+ + E  + L   D++K+ F  +VS+ELR+PLT IIG T  LLK  K+   ++ Q  ++
Sbjct: 192 EKEIQEIYKRLFDMDQLKSQFFANVSHELRTPLTLIIGPTRTLLKDQKI---SAAQRTFL 248

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  +S  LL  VND+LDL+ ++AG M L YS   L+D++ ++     +   E NI   
Sbjct: 249 ETMERNSYTLLKHVNDLLDLSKLEAGKMTLRYSNANLSDMIQDIAAHFNSVADERNIDF- 307

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V+   K      D  ++ +I   ++SNA  F      +      ++      V +NG  +
Sbjct: 308 VLDLPKNFPIQIDVPKMERIILNLISNAFKFVPDSGKIHCTLKMESATAYIYVADNGPGV 367

Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           P  +   +F +F      G  R   G GLGL+I   F+NLH G + +  S  G      +
Sbjct: 368 PVHLRDQIFEKF-RQGEEGDSRSFGGTGLGLAIAREFVNLHLGSIGVFDSFLGGALFKVQ 426

Query: 788 IP 789
           IP
Sbjct: 427 IP 428



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 119/257 (46%), Gaps = 14/257 (5%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           ++LL +   +Y I P    +  +   N          L +  EAL   +    SF   VS
Sbjct: 563 IKLLQEGAQDYLIKPFTPEELSIKVHNFA-------VLKKTIEALENVNRDMESFSYSVS 615

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           ++LR+P+  I GF  ++       ++S+  + ++ +  +   + NL+ D+L+   +    
Sbjct: 616 HDLRAPILGIEGFLQIVLEDFSEKMDSEALRLLKTVQKNVIYMNNLIQDLLNFHKISK-- 673

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + LN   + +N ++ EV  ++     + +   ++    +L + +A+   L Q++  ++SN
Sbjct: 674 IDLNIRIVDMNRMVEEVIAAVLQNYPKKSYSFQL---NELPNALANGSALKQVWMNLISN 730

Query: 698 AMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           A+ +SS     ++K   +  +G  ++ V++NG    +     +F  F     + +  G G
Sbjct: 731 AVKYSSTKEHPMIKIGFEEVDGSNVYFVEDNGVGFNKIYSNRLFKVFQRLHTQEEFEGTG 790

Query: 756 LGLSIVESFINLHGGHV 772
           +GL+IV   +  HGG V
Sbjct: 791 VGLAIVARIVQRHGGQV 807


>gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 977

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 12/219 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+E+R+P+  ++G T+LL    LG+L N KQ Q+ E I  S   LL ++NDI
Sbjct: 294 KSEFLANMSHEIRTPMNGVLGMTELL----LGTLLNGKQRQFAETIRNSGEALLAIINDI 349

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
           LD + ++AG ++L      +++LL +  +  A+  H+  + + V I        V D  R
Sbjct: 350 LDFSKIEAGKIELEKIPFDMHELLCDAAELFASSAHQKGLELLVSIHPDVPRMVVGDPAR 409

Query: 687 LLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           L Q+   + SNA+ F+ +G  VI     ++ +DN    F V++ G  I  +  + +F  F
Sbjct: 410 LRQVVLNLASNAVKFTDQGEIVISADVAESGQDNILIRFLVRDTGIGISPESLEKIFEGF 469

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
                   RR  G GLGL+IV     L GG   + S+ +
Sbjct: 470 AQADGSMTRRYGGTGLGLTIVRQLAGLMGGTTRVESTPD 508


>gi|323484285|ref|ZP_08089653.1| hypothetical protein HMPREF9474_01404 [Clostridium symbiosum
           WAL-14163]
 gi|323402437|gb|EGA94767.1| hypothetical protein HMPREF9474_01404 [Clostridium symbiosum
           WAL-14163]
          Length = 661

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 127/226 (56%), Gaps = 10/226 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  AL  KNE LR      ++ ++ +S++LR+PLT+I G   +L +S+      K+ +  
Sbjct: 421 AAAALLAKNEQLR------SNLLRSISHDLRTPLTSISGNAGILLSSEQSIGKEKRRKLY 474

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I   S  L+NLV ++L +  ++ G MKL  +T +L++++ E  +    +  E+ I+IK
Sbjct: 475 EDIYDDSLWLINLVENLLSVTRIEDGTMKLRLATELLDEVVGEALRHTDRRRCEHKIKIK 534

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              D  L    AD + ++Q+   ++ NA+ ++  GS V+++  R+    + +V +NG  I
Sbjct: 535 QEEDFLL--VKADARLIMQVIINLVDNAIKYTPPGSEVVIETKREGNLAVVTVADNGDGI 592

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
            ++  + +F+ F + A +    RR +GLGL++ +S I  HGG +S+
Sbjct: 593 SDESKEHIFDMFYTAATKIADSRRSLGLGLALCKSIITAHGGTISV 638


>gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 585

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K ++++  FV +VS+EL++P+T+I GF + L     G++  +++   ++  I   S  
Sbjct: 352 LKKLEQMRKDFVANVSHELKTPITSIKGFAETLLD---GAMKDERTLEHFLSIIWKESER 408

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV D+LDL+ ++    +L+  T+ L  LL+E+      K  E  I  + +   K   
Sbjct: 409 LQTLVQDLLDLSKIEQQEFQLHMETVDLTHLLHEIAIMFQRKAEEKGIDFR-MHAAKSIY 467

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  RL QIF  +++NA+ ++ KG  V + A     + +  VK+ G  I E     +F
Sbjct: 468 MEGDANRLKQIFINLITNALTYTPKGGQVEVIAEEQEEETLVHVKDTGIGIEEAEIPRIF 527

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF  V  A      G GLGL+IV+  +  H GH+++ S+    TT     P +
Sbjct: 528 ERFYRVDKARSRHSGGTGLGLAIVKHLVEAHHGHITVKSAVGKGTTFTVHFPKQ 581


>gi|325981723|ref|YP_004294125.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
 gi|325531242|gb|ADZ25963.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
          Length = 1222

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 11/256 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            A+ +   V V ++ R+ ++  E+    N+ L + D +K+ F  +VS+ELR+PLT I+  
Sbjct: 163 QAEILRRTVEVKEANRSLKSALEELSVANQRLTELDHLKSEFFANVSHELRTPLTLILAP 222

Query: 591 TD--LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            +  L +    GS  +K+ + +E +  ++ +L   V D+LD+A  +A  M++  ++  + 
Sbjct: 223 LEDRLRQLPNKGSKPTKERREIELMLRNARLLYRHVTDLLDVAKSEANCMEVYSASFDIA 282

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+           H+ +I + +IS   L    +D ++L ++   +LSNA  F+     +
Sbjct: 283 QLIRMTASYFEQAAHDRDITLNIISPRTL-VIESDSEKLQRVLLNLLSNAFKFTPDNGCI 341

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR--GVGLGLSIVESF 764
            L       D    V++ G  IP  M + VF RF  V NA    R   G GLGL+IV+ F
Sbjct: 342 TLSLTSTQNDVRIDVQDTGPGIPMAMRERVFERFTRVENATAANRNYGGTGLGLAIVKDF 401

Query: 765 INLHGGHVSISSSDEG 780
           ++L GG V++  S  G
Sbjct: 402 VDLLGGKVTLEDSPGG 417



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E+ + E+   L+  ++   SFV  VS++L++PL  + G++ LL+      L+ +   ++ 
Sbjct: 979  EKRIAERTAELQALNQSLESFVYSVSHDLKAPLRGVEGYSRLLEEDYFDRLDDEGRLFIS 1038

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
             I    T +  L+ND+L  + ++    KL    +   DL   + Q++A    E  +  I+
Sbjct: 1039 NIRTGVTHMNELINDLLAYSRMER--CKLQSHEL---DLTLLIHQALAEYNEEITLHAIE 1093

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFS--SKGSTVILKAARDNGDFIFSVKNNGS 728
            +++D        DR+ L+     +L NA+ FS  +    +   A R+    I  +++NG 
Sbjct: 1094 IVADFPSFKVYGDREGLVLTLRNLLGNAIKFSQGTPHPRIEFGACRNKDHVILWIRDNGI 1153

Query: 729  SIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                     +F  F    HR +   G G+GL++V+  +   GG V   SS     T +  
Sbjct: 1154 GFDMKYNSRIFEIF-ERLHRLEDYPGTGIGLALVKKAMQRMGGRVWAQSSPGEGATFSIE 1212

Query: 788  IPS 790
            +P+
Sbjct: 1213 LPA 1215


>gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 546

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 115/220 (52%), Gaps = 7/220 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTI 619
           A +  +E +N+F+  +S+ELR+P++ I GF + +     G    +Q  + ++ I   +  
Sbjct: 308 AQKAEEERQNTFISVISHELRTPVSIIKGFAETMLRPD-GQFTVEQYREALQVIGEEADR 366

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLG 678
           L   + D+LD++ + AG ++L YS + L  L+ EV +  A ++ +     I+V  D  + 
Sbjct: 367 LARQIQDLLDVSRIAAGGLRLEYSDVSLQLLVKEVVRRFAAQVGDRIEFEIRVPDD--MP 424

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD +RL Q+F+ ++ NA+ +S  G T+ + A  +    I  V + G  IP +    +
Sbjct: 425 PVYADYERLRQVFTNLIENAVKYSPNGGTIRIGARAEGEMAIVYVADQGIGIPPEEQDLI 484

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F RF  V N  R  R G GLGL I  + +  HGG + + S
Sbjct: 485 FERFYRVDNRLRRDRPGSGLGLYITRAIVEAHGGRIWVES 524


>gi|148509171|gb|ABQ81808.1| GacS [Pseudomonas alkylphenolia]
          Length = 917

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 132/243 (54%), Gaps = 17/243 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
           + LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   + +   V  D 
Sbjct: 331 SSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI---FSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A    ++GD +     V++ G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVTRAMLEEEHGDSVQLRICVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+  EG    ++ 
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWVSL 508

Query: 787 RIP 789
           R+P
Sbjct: 509 RLP 511


>gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 863

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 138/273 (50%), Gaps = 21/273 (7%)

Query: 536 AQTMLTFVNVT-----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           A+++L    V      + ++AE AL     A   A++ K+ F+ ++S+E+R+PL  ++G 
Sbjct: 444 AESILQLAGVRAGGELERLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGM 503

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL T+   + N +Q +Y+     S+  L  L++DILD++ ++AG M +      + + 
Sbjct: 504 LQLLDTT---APNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNT 560

Query: 651 LNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            + +K+  A +     + ++   + D  L   + D  RL QI   ++ NA+ F+ KG   
Sbjct: 561 WDSIKELFALEARRKGLVLEFGCVKDLPL-LLIGDEVRLRQILFNLVGNAVKFTEKGKIR 619

Query: 709 I-------LKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           I       L +++ +    + +V + G  IPE+  K +F  FV       RR  G GLGL
Sbjct: 620 IDASLLPLLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGL 679

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SIV   +NL GG ++I S+    TT+   +P K
Sbjct: 680 SIVRRLVNLLGGDIAIDSTLGEGTTVYLSLPLK 712


>gi|124515848|gb|EAY57357.1| putative multi-sensor signal transduction histidine kinase
           [Leptospirillum rubarum]
          Length = 454

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 121/235 (51%), Gaps = 7/235 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           +R+ + I+  FV +VS+E+R+PLT+I GF + L     G +N  ++  ++   I + +  
Sbjct: 212 IRQLERIRKDFVANVSHEIRTPLTSIRGFAEALHD---GGINDPKTAREFSGIILSHAER 268

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L N+V+D+L L+ ++ G   + Y ++ L+  +  ++   A    +  IR  V    +  +
Sbjct: 269 LGNIVSDLLHLSELETGKAVMRYGSVSLSRQIAHIRDVYADHARKKGIRFTVQLPEETLT 328

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  D  ++  +   ++ NA+ ++ +G  V     ++    +F V+++G  IP      +F
Sbjct: 329 YETDEGKMDLVLGNLVDNALKYTPEGGEVFFGGWKEGDAIVFEVRDSGVGIPRTEVDRIF 388

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  V  A   +  G GLGLSIV   + +  G V ++SS    +T   R+PS+E
Sbjct: 389 ERFYRVDRARSREMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFFVRVPSRE 443


>gi|116330989|ref|YP_800707.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124678|gb|ABJ75949.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 839

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYV 610
           E+ + E  + L   D++K+ F  +VS+ELR+PLT IIG T  LLK  K+   ++ Q  ++
Sbjct: 192 EKEIQEIYKRLFDMDQLKSQFFANVSHELRTPLTLIIGPTRTLLKDQKI---SATQRTFL 248

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  +S  LL  VND+LDL+ ++AG M L YS   L+D++ ++     +   E NI   
Sbjct: 249 ETMERNSYTLLKHVNDLLDLSKLEAGKMTLRYSNANLSDMIQDIAAHFNSVADERNIDF- 307

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V+   K      D  ++ +I   ++SNA  F      +      ++      V +NG  +
Sbjct: 308 VLDLPKNFPIQIDVPKMERIILNLISNAFKFVPDSGKIHCTLKMESATAYIYVADNGPGV 367

Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           P  +   +F +F      G  R   G GLGL+I   F+NLH G + +  S  G      +
Sbjct: 368 PVHLRDQIFEKF-RQGEEGDSRSFGGTGLGLAIAREFVNLHLGSIGVFDSFLGGALFKVQ 426

Query: 788 IP 789
           IP
Sbjct: 427 IP 428



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 119/257 (46%), Gaps = 14/257 (5%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           ++LL +   +Y I P    +  +   N          L +  EAL   +    SF   VS
Sbjct: 563 IKLLQEGAQDYLIKPFTPEELSIKVHNFA-------VLKKTIEALENVNRDMESFSYSVS 615

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           ++LR+P+  I GF  ++       ++S+  + ++ +  +   + NL+ D+L+   +    
Sbjct: 616 HDLRAPILGIEGFLQIVLEDFSEKMDSEALRLLKTVQKNVIYMNNLIQDLLNFHKISK-- 673

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + LN   + +N ++ EV  ++     + +   ++    +L + +A+   L Q++  ++SN
Sbjct: 674 IDLNIRIVDMNRMVEEVIAAVLQNYPKKSYSFQL---NELPNALANGSALKQVWMNLISN 730

Query: 698 AMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           A+ +SS     ++K   +  +G  ++ V++NG    +     +F  F     + +  G G
Sbjct: 731 AVKYSSTKEHPMIKIGFEEVDGSNVYFVEDNGVGFNKIYSNRLFKVFQRLHTQEEFEGTG 790

Query: 756 LGLSIVESFINLHGGHV 772
           +GL+IV   +  HGG V
Sbjct: 791 VGLAIVARIVQRHGGQV 807


>gi|288941472|ref|YP_003443712.1| histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896844|gb|ADC62680.1| histidine kinase [Allochromatium vinosum DSM 180]
          Length = 547

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 24/249 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  L         A+  K+ F+ ++S+E+R+PL  IIG  +LL  ++L   ++ Q +Y
Sbjct: 126 RTEAELARARHEAESANRAKSEFLANMSHEIRTPLNAIIGIGELLAKTRL---DATQREY 182

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  S   +L+L+ DILD + ++AG ++L+         + E    +  K  E  +RI
Sbjct: 183 VHIIETSGNAMLSLIEDILDYSKIEAGRLELDAVRFAPAVCIREAVGLVQLKAREKGLRI 242

Query: 670 KVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNG-- 717
            V  D G  G F+ D  R  QI   +L NA+ F+ +G         S V   A +D    
Sbjct: 243 DVAVDPGIPGYFLGDSHRFRQIAINLLGNAVKFTEQGRIGVSLNGHSIVPEDAGQDRTMS 302

Query: 718 -------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
                    + +V++ G  IP D    +F +F        RR  G GLGL+I      L 
Sbjct: 303 QSDEAWYQLVLTVEDTGIGIPPDRQSHIFAKFSQVDASTTRRYGGTGLGLAICRQLARLL 362

Query: 769 GGHVSISSS 777
           GG + + S+
Sbjct: 363 GGDIEVESA 371


>gi|291568909|dbj|BAI91181.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 933

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 10/242 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++++D  +AE  L    E    A++ K +F+ ++S+ELR+PL  I+GFT LL      +L
Sbjct: 428 LDISDRKQAEEELVRAKEVAEAANQAKTTFLTNMSHELRTPLNAILGFTQLLNYGD--NL 485

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   +  I  S   LL+L+NDILDL+ ++AG + ++     L  +L+E+K   + K 
Sbjct: 486 TEHQHNNLNIIQRSGEHLLSLINDILDLSKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKA 545

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARD 715
            + N+ +  +    L  ++  DR +L QI   ++ NA+ F+ +G  VI      + ++  
Sbjct: 546 SQKNLYLDCVYSPDLPRYIRGDRLKLRQIMINLIGNAIKFTEQGRVVITADHKFISSSPP 605

Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 +V ++G  + PE++ +     F + A    + G GLGL+I + ++ L G  + +
Sbjct: 606 ICCLQIAVTDSGVGMTPEEIAQLYEPFFQAQAGIDSQEGTGLGLTICQKYLQLMGAEIEV 665

Query: 775 SS 776
            S
Sbjct: 666 IS 667


>gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EDL933]
 gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. Sakai]
 gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EC4024]
 gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK966]
 gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. G5101]
 gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. LSU-61]
 gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1125]
 gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1044]
          Length = 949

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  + +        +++N +  +
Sbjct: 499 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTVRIP 689


>gi|160882913|ref|ZP_02063916.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|237722969|ref|ZP_04553450.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372527|ref|ZP_06618909.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
 gi|156111777|gb|EDO13522.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|229447491|gb|EEO53282.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632336|gb|EFF50932.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
          Length = 785

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 143/270 (52%), Gaps = 17/270 (6%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +L  +  ++T+    E+ L        ++D +K++F+ ++S+E+R+PL  
Sbjct: 383 ALVPMEGRKPLLIGISWDITNLQNIEQELIRARIKAEQSDRLKSAFLANMSHEIRTPLNA 442

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ LL +++      ++  Y + I+ +S ILL L+NDILDL+ ++AG   L Y    
Sbjct: 443 IVGFSQLLPSAETA---EEKKLYSDIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497

Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           +N  L EV ++I T +H+  ++  + ++ D +    +   D+ R++Q+ +  L+NA  F+
Sbjct: 498 MN--LGEVCRTIYT-VHKERVKEGVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFT 554

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +G  +     R + D    VK+ G  I  +    +F RFV      Q  G GLGLSI  
Sbjct: 555 YEGE-IRFGFGRMDKDIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICR 611

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             I   GG + ++S     +T    IP +E
Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|163849986|ref|YP_001638029.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661591|gb|ABY28958.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 786

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 9/244 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           AER L +K  A   A++ K+ F+ ++S+ELR+PL  I+GF +L+++   GSL S + + Y
Sbjct: 508 AERHLDQKARA-EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADY 566

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S T LL++++DIL ++ ++A  +KL    I L   L      +A +    ++ I
Sbjct: 567 CRDIQQSGTYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSI 626

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +   G L   +AD + L QI   I+ NA+ F+ +   + L+    NG     + + G  
Sbjct: 627 DLELAGTL-HVLADERALQQILLNIIQNAVKFTPERGRIALRGRSCNGFVHLFIGDTGIG 685

Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-IN 785
           IP+     +   F +  +N  R   +G GLGL+I  S   LHGG + I  S+EG+ T + 
Sbjct: 686 IPKTAISKLGRPFEQVETNLTRSY-KGSGLGLAIARSTAELHGGSLRI-RSEEGIGTLVL 743

Query: 786 CRIP 789
            R+P
Sbjct: 744 VRLP 747


>gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 940

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 126/253 (49%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++  + E  L E  E    A   K  F+ ++S+E+R+P+  II    LL+ ++L    
Sbjct: 540 DISERKKTEAVLQEAKERAEAASRAKTEFLANMSHEIRTPMNGIISMAHLLRMTEL---T 596

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+Q +Y+  +  SS  LL L++DILD++ ++AG ++L Y+   +   + EV  S   ++ 
Sbjct: 597 SEQQEYLASLQISSKNLLALISDILDISKIEAGKLELEYADFSVRATIEEVVASQMPRIT 656

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI 720
           +  + I   +SDG     + D  R  QI   +L NA+ F+ +G  S V   +AR +   I
Sbjct: 657 QKRLDICTELSDGLPEILLGDSLRFKQILLNLLGNAIKFTEQGGISIVAKPSARHDNQLI 716

Query: 721 FS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               + + G  +  ++ + VF+ F        R+  G GLGLSI    + L GG +  +S
Sbjct: 717 MRIMIADTGIGMSPEVLERVFSPFEQADSSTTRKYGGTGLGLSICRRLVELMGGRIWAAS 776

Query: 777 SDEGVTTINCRIP 789
                +T    +P
Sbjct: 777 RPGSGSTFFVELP 789


>gi|332532631|ref|ZP_08408507.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037847|gb|EGI74296.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 924

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K EA + A+ +K+ F+  +S+ELR+PL  +IGFT  L KT     LN  Q  Y++ I  S
Sbjct: 280 KKEA-QDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTP----LNKHQKDYLDTIMLS 334

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +  L+ +++DILD + ++AG M+L      L D +NEV   +A   H+  + + + I+  
Sbjct: 335 ANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHDKQLELSIYINQQ 394

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIP 731
                  D  R  Q+   +LSNA+ F+ KGS  +  + R    +    + SV + G  IP
Sbjct: 395 VPDDLTGDPTRFKQVLINLLSNAIKFTEKGSIKVDISHRLLDDERTSLLVSVTDTGVGIP 454

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            D   S+F  F        R+  G GLGL I +  +    G ++++S+
Sbjct: 455 MDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSA 502


>gi|317478874|ref|ZP_07938024.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904956|gb|EFV26760.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 914

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 130/247 (52%), Gaps = 9/247 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + +R L    E    +D +K++F+ ++S+E+R+PL  I+GF+ ++  S   +  
Sbjct: 505 DITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TNE 561

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y E + +++  LL L+N+ILDL+ +++GI++   + + L+ L  E+  +   +  
Sbjct: 562 EERLGYYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP 621

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           +    I   SD  +     D+ R+ Q+ S ++ NA  F++ G   I       G ++ F 
Sbjct: 622 KGVELIYEPSDENI-VIDGDKNRIFQVISNLIGNAFKFTTAGH--ISYGYHQEGKYVAFH 678

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  I  D    VF RFV   +  Q  G GLGLSI ++ I   GG++S++S     T
Sbjct: 679 VTDTGMGIAPDKVDRVFERFVKVNNFAQ--GTGLGLSICKTIIERLGGNISVTSEVGKGT 736

Query: 783 TINCRIP 789
           T    +P
Sbjct: 737 TFTFVLP 743


>gi|310830266|ref|YP_003965366.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare
           Y25]
 gi|308753172|gb|ADO44315.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare
           Y25]
          Length = 715

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 125/247 (50%), Gaps = 5/247 (2%)

Query: 547 DSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           D++ A R  L ++   L +    K+ FV ++S+ELR+PL  ++    LL  ++  +L+ +
Sbjct: 27  DALAASRQQLADQAGDLARESRYKSEFVANMSHELRTPLNALLIMARLLSENRPHNLSPE 86

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q Q+ E I +S   LL L+NDILDL+ ++AG + ++       D+   + ++ A +  E+
Sbjct: 87  QIQWAETIESSGRDLLGLINDILDLSRIEAGKVDVDPEVTQPKDVAARMMRAFAVQASES 146

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVK 724
            +++       +     D  +L QI    LSNA+ F+ KGS V L  AR   + + FSVK
Sbjct: 147 GLKLVSEVADDVPEITTDVGKLEQILRNFLSNALKFTQKGS-VTLSVARSGAETVTFSVK 205

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  +   +VF  F        RR  G GLGLSI      + GG V + S+    +
Sbjct: 206 DTGIGIAAEQHDAVFEAFRQADGSISRRFGGTGLGLSISRDLAGILGGDVMLESTPGKGS 265

Query: 783 TINCRIP 789
           T    +P
Sbjct: 266 TFILTLP 272


>gi|254254025|ref|ZP_04947342.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124898670|gb|EAY70513.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 477

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 13/246 (5%)

Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+L    +A  +ADE   +K+  +  VS+ELR+PL  I G+ ++L++     L     Q 
Sbjct: 88  RSLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRSVDGQGL---AQQA 144

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  S+  L  +V D+LD +++  G ++L    + L  ++ E  + +A     N I +
Sbjct: 145 VDAIDRSARSLSRMVGDLLDASSLATGRLQLERVPVDLVRIVRETARELAATAQANGIVL 204

Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
              +D  + + V  AD +RL Q+ S +LSNA+ ++  G  V +   R       SV + G
Sbjct: 205 A--TDCAMPTCVIPADGERLRQVLSNLLSNAIKYTPPGGRVDVSLTRAGEHVRLSVADTG 262

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTI 784
             I  +    +F+ F     A    +RG+GLGLSIV +  +LHGG VS +S   G  TT+
Sbjct: 263 QGIAPEHLPHLFDTFNRPHGAPTSPKRGLGLGLSIVRNIAHLHGGDVSATSDGAGRSTTV 322

Query: 785 NCRIPS 790
              +P+
Sbjct: 323 TVTLPA 328


>gi|254679644|gb|ACT78509.1| GacS [Pseudomonas sp. DF41]
          Length = 916

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 17/243 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTT-INC 786
                +++F  F    N+   Q  G GLGL I +  +   GG + + S+  EG    I+ 
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISL 508

Query: 787 RIP 789
           R+P
Sbjct: 509 RLP 511


>gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
 gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
          Length = 571

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L++ ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 338 LKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRVS 453

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 454 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|158333425|ref|YP_001514597.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158303666|gb|ABW25283.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 905

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 132/267 (49%), Gaps = 13/267 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDL 593
           Q  L     T   R E+   E + A  KA+     K  F+ ++S+ELR+PL  I+GF+ L
Sbjct: 397 QAKLKLAQQTLEKRVEQRTEELSAAKEKAEIANHAKTEFLANMSHELRTPLNAILGFSQL 456

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L++   G+L      +V  I+ S   LL L+ND+L+L+ ++AG   +N S++ L +LL  
Sbjct: 457 LQSE--GNLTEAHHSHVGIINRSGEHLLTLINDVLELSKIEAGQTVVNVSSLDLIELLET 514

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
           ++  +  K +  +I +    +  +  F+  D  +L QI   +L NA+ F+ +G   +   
Sbjct: 515 LQSMMQLKANAKSIHLSTTYNPDIPHFIETDTIKLRQILINLLGNAIKFTKQGQVNLNVR 574

Query: 710 -LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFI 765
            L+     G     F+V + G  I     +++F  FV      Q + G GLGL I   F 
Sbjct: 575 TLETPNTEGLICLQFTVSDTGPGIDSSGLEAIFTPFVQTRTGQQSQEGTGLGLPISRKFA 634

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            L GG +++ S+    +  +C I +K+
Sbjct: 635 RLLGGDITVDSTPNEGSAFHCTIQAKQ 661


>gi|71909424|ref|YP_287011.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849045|gb|AAZ48541.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 963

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 142/292 (48%), Gaps = 21/292 (7%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKN-------EA 561
           LQG   +  D    +S+ P+ +    + F+     N+T+ +  E  LT KN       E 
Sbjct: 117 LQGKKSIFVD----FSLTPIRDDAGRVAFLLPEGRNITEKIAIEAELTRKNGELQLALEK 172

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTIL 620
           LR+ D  K  F  +VS+ELR+PL  I+G  D +L+ S+   L  ++   +  I  ++  L
Sbjct: 173 LREIDGFKTKFFANVSHELRTPLALILGPVDQMLRESE--QLGERERFRLTTIKRNAQSL 230

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              VND+LDLA +DA  M L Y  + +  LL EV    A    E  I + +    +L + 
Sbjct: 231 HQQVNDLLDLARIDAQQMPLAYVCVNVVALLREVAAGFAAAAEERAISLIIEGADELQAD 290

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVF 739
           V DR +  ++ + +LSNA  F+  G  +     R  N  F+ SV++NG  +P  M + +F
Sbjct: 291 V-DRAKFARVLANLLSNAFKFTPAGGRICCSITRVANDRFLLSVQDNGPGVPPPMKQQIF 349

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +RF          G GLGL+IV+ F+ LH G V +  +  G       +P +
Sbjct: 350 DRFAQGQGGLSGIGSGLGLNIVKEFVELHFGTVVVLDAPGGGAIFQVEMPKR 401



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 148/361 (40%), Gaps = 32/361 (8%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G+A+   +GRI  +NPA + +    E  +  G    +I+    R     +   LF   I 
Sbjct: 615 GIALADREGRILKANPALQQMLGYSEAEIV-GVSFIDISDESQRAMTLRNVHGLFDGSID 673

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            +  +++  +     L  +V   S+IP   +   +  +   +V+    AE AL      L
Sbjct: 674 HYHVQKRYERRDGSFLWANV-SASLIPAVDVEGPRLAVIVEDVSSRKEAESALAATQTEL 732

Query: 563 RKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            +          V  +++E+  PL+ I+  +     + L  L  +   Y E ++A     
Sbjct: 733 ARVSRFTAMGELVASIAHEVNQPLSAIVTNSQ----AALRWLARETPDYQEVVAA----- 783

Query: 621 LNLVNDILDLA-TVDAGIMK------LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           LN VN    LA  V A I        +    +V+  +L  + Q + T + E ++ + +  
Sbjct: 784 LNRVNRDASLAGEVIARIRNFLSMGGMQRERLVVRPILENLLQMLQTMLQEADVEVDLRI 843

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDF----SSKGSTVILKAARDN-GDFIFSVKNNGS 728
              L   +AD  +L Q+   ++ NA+D       +   + +  + D  G  +FSV + G 
Sbjct: 844 APGLPDLLADPVQLQQVLLNLVVNAVDAMREEKERARRLSISVSADTAGSVLFSVSDTGP 903

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP D    +F+   S     + RG+G+GL+I  S +  HGG + +     G       I
Sbjct: 904 GIPPDKAAKIFDALFST----KSRGLGMGLAISRSIVENHGGRLRLVPEAAGGAHFVFNI 959

Query: 789 P 789
           P
Sbjct: 960 P 960


>gi|311747467|ref|ZP_07721252.1| putative sensory box histidine kinase/response regulator
            [Algoriphagus sp. PR1]
 gi|311302668|gb|EFQ79250.1| putative sensory box histidine kinase/response regulator
            [Algoriphagus sp. PR1]
          Length = 1283

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 132/252 (52%), Gaps = 18/252 (7%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +V+    A++ L +  E   +A  +K+ F+  +S+E+R+P+  +IG + LL         
Sbjct: 1019 DVSKLKEAQKELVKAKENAEQASLVKSQFLSIMSHEIRTPMNAVIGLSHLLMQE---DPR 1075

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            + Q + ++ +  S+  L+ L+NDILD   +D+G ++L    + L +L+  +  S + + +
Sbjct: 1076 ADQLENLKTLQFSAENLMALINDILDYNKIDSGKVELEELPLDLKNLVTRIVHSHSFQAN 1135

Query: 664  ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------AR 714
            E ++R+  + D  L    + D  RL QI + +LSNA+ F+ KG   I  +         R
Sbjct: 1136 EKDLRLSCLIDPDLPQKLLGDSVRLGQIINNLLSNAIKFTDKGEVTIKLSHEILEKGICR 1195

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
             N    F   + G  +PED  +S+F  F   +    R+  G GLGL+IV+  +NL+GG +
Sbjct: 1196 VN----FECIDTGIGVPEDKKESIFEAFTQASSSTTRKYGGTGLGLAIVKRLVNLYGGDI 1251

Query: 773  SISSSDEGVTTI 784
             ++S+  G +T 
Sbjct: 1252 EVNSNISGGSTF 1263


>gi|282898162|ref|ZP_06306153.1| Histidine Kinase [Raphidiopsis brookii D9]
 gi|281196693|gb|EFA71598.1| Histidine Kinase [Raphidiopsis brookii D9]
          Length = 624

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L   +++KN F+ + S+E+R+PLT+IIGFT+LL      +   +  +Y++ I +S   LL
Sbjct: 232 LEHKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYQAERERHQEYLQIIQSSGKHLL 291

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+NDILDL+ ++A  +++ +  + +  L   V   +  K  +  +++++     + + +
Sbjct: 292 SLINDILDLSKIEANQLEVQWEVVDIPSLCKSVLALVKEKAGDKGLKLQIQISEDVSTLL 351

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+   +L NA+ F++ GS V L+    +    F+V + G  I E+    +F  
Sbjct: 352 VDPLRLKQMLLNLLFNAIKFTNVGS-VGLRVVIKDSWLRFTVWDTGVGISEEDLSLLFRP 410

Query: 742 FVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +       N    +  G GLGL + +    +HGG + + S
Sbjct: 411 YTQLVNTINTQIDKNHGTGLGLIVTKQLAEIHGGSIEVRS 450


>gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
 gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
          Length = 571

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L++ ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 338 LKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQV-NVLKRVS 453

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 454 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|209885662|ref|YP_002289519.1| periplasmic sensor signal transduction histidine kinase
           [Oligotropha carboxidovorans OM5]
 gi|209873858|gb|ACI93654.1| periplasmic sensor signal transduction histidine kinase
           [Oligotropha carboxidovorans OM5]
          Length = 523

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 13/235 (5%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G        
Sbjct: 238 EQAKAISDEARHRAEAANVSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGP--HAVPV 295

Query: 609 YVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y +Y   I  S   LLNL+N+ILDL+ ++AG  +LN     L   + +    +  +    
Sbjct: 296 YKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEPFSLVHAVADCHHLLKLRASNR 355

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSV 723
            I I    +  +     D +   QI   +LSNA+ F+ +G  + LKA      G ++  V
Sbjct: 356 GITIHEAFEEDMPKLWGDERATRQIVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLI-V 414

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           K+ GS IP+D    V   F   SN+ +   +G GLGL I +S I++HGG  ++ S
Sbjct: 415 KDTGSGIPDDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKS 469


>gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
 gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
          Length = 587

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  ++ S
Sbjct: 411 MQGLIEDLLDLSKIEQQGFKLSVGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 470 VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|332663617|ref|YP_004446405.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332431|gb|AEE49532.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 572

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 126/250 (50%), Gaps = 18/250 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + E   ++++ K  F+ H+S+E+R+PL  I GFTDLL  +   SL+ KQ +++  I 
Sbjct: 44  LIAQKERAEQSEKFKQRFLAHMSHEIRTPLHGIAGFTDLLLET---SLSEKQRRWLSSIY 100

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S+  L  +VN +L+L+ ++AG +KL         +  +V++S++ +     I + + + 
Sbjct: 101 HSTERLDEVVNAVLELSKLEAGELKLRKIPFSPAKVAADVQESLSLRAQNKGINLLLDVH 160

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA----RDNGD-------FIF 721
               G+   D  RL QI   +  NA+ F+ KGS T+ +  A    R + D        I 
Sbjct: 161 KNVPGALRGDPTRLYQILMNLTGNAVKFTEKGSVTIKMDCAESIERTSDDPATNWVTLIL 220

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            + + G  IP +   +VF+ F         R  G GLGL++ +  + LHGG + + S+  
Sbjct: 221 RIIDTGIGIPAEKITAVFDSFEQAGEDMVARYGGTGLGLTVTQELVQLHGGDIQVESALG 280

Query: 780 GVTTINCRIP 789
             TT   ++P
Sbjct: 281 VGTTFTVKLP 290


>gi|294678968|ref|YP_003579583.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
 gi|294477788|gb|ADE87176.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
          Length = 743

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 10/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  +  E+ L E       A+  K++F+ ++S+E+R+P+  ++G  +LL  ++L   N
Sbjct: 200 DITHIIEREQELEEARNKAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLGETEL---N 256

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YVE I +S   LL ++ND+LD + ++A  +KL      L   L+E+   +     
Sbjct: 257 EEQQLYVETIRSSGEALLTIINDVLDYSKIEAERLKLYPEVFDLERCLHEIMVLLQPSAK 316

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI 720
           +  +++ V  D  L + F+AD  R+ QI + +L NA+ F+  G  +  ++   RD   + 
Sbjct: 317 DKGVKLLVDYDLFLPTRFIADPGRMRQILTNLLGNAVKFTHTGHVLARVVGFERDAEHYE 376

Query: 721 F--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V++ G  I  D    VF  F        RR  G GLGL+I    ++L GG V + S
Sbjct: 377 LHVTVEDTGIGISPDNLDHVFGEFNQVEATSNRRFEGTGLGLAITRQLVHLMGGSVWVDS 436

Query: 777 S 777
            
Sbjct: 437 Q 437


>gi|256783375|ref|ZP_05521806.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1331

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 751  QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 810

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ +      +  +  
Sbjct: 811  AGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEATFRPMTSQKGLEF 870

Query: 670  KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN----------G 717
             V+ + G     + D  RL Q+   +LSNA+ F+ +G   + ++ A D+           
Sbjct: 871  TVVTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELAVEPAPDDEVPGGVVRGGP 930

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F VK+ G  IPE   +S+F  F        R+  G GLGLSI      L GG V++ 
Sbjct: 931  VVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSITREIAQLLGGAVTVD 990

Query: 776  SSDEGVTTINCRIP 789
            S+ +  +T    +P
Sbjct: 991  STPDRGSTFTLYLP 1004


>gi|221198738|ref|ZP_03571783.1| histidine kinase [Burkholderia multivorans CGD2M]
 gi|221205000|ref|ZP_03578016.1| histidine kinase [Burkholderia multivorans CGD2]
 gi|221174791|gb|EEE07222.1| histidine kinase [Burkholderia multivorans CGD2]
 gi|221181189|gb|EEE13591.1| histidine kinase [Burkholderia multivorans CGD2M]
          Length = 759

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 137/280 (48%), Gaps = 24/280 (8%)

Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
           P P A     +++ V VT+ V A   L   N         LR A+  K+ F+  + +ELR
Sbjct: 312 PQPQADGIGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELR 371

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++ S+ G     +   +  I      ++ L++D+LD++ +  G ++L 
Sbjct: 372 NPLTPISLALELVR-SREGHATPNE---IAIIQRQLDHMVRLIDDLLDVSRITRGKIELK 427

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L D+++   +  +  + +   R+ V  D  +     D  RL Q+ + +L+NA  +
Sbjct: 428 KEAVRLGDIVDRAVEVASPLLEQRRHRLHVDIDADVRCH-GDPVRLSQVVANLLTNAAKY 486

Query: 702 SSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           ++ G  + L  AR +GD  +  V+++G+ IP D   S+F  F        R   G+G+GL
Sbjct: 487 TAPGGDIGLHVARGDGDTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGL 546

Query: 759 SIVESFINLHGGHVSISSSDEG------VTTINCRIPSKE 792
           ++V+SF+ LHGG V   S+  G      VT    R P+ E
Sbjct: 547 ALVKSFVMLHGGTVRADSAGPGLGSTFTVTLPEYRPPAVE 586


>gi|16330789|ref|NP_441517.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653282|dbj|BAA18197.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 750

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 14/254 (5%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSL 602
           E+ + E+ + LR        A+ +K+ F+ ++S+ELR+PLT+IIG +  L        SL
Sbjct: 355 EKRVIERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASL 414

Query: 603 N-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             +KQ  Y+  I  +   LL+ +N I+ L+ +++G   LN  +  L+ L   V  S+   
Sbjct: 415 PPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGV 474

Query: 662 MHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             +  I +++     +G   F AD++RL QI +++L+NA+ F+    TVIL+  +++   
Sbjct: 475 AIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQA 534

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           IF V++ G  I E     +F  F    +++       G+GL++ +  + LHGG++ + SS
Sbjct: 535 IFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESS 594

Query: 778 DEGVTTINCRIPSK 791
               T     IP +
Sbjct: 595 PGQGTIFTTVIPQQ 608


>gi|298481017|ref|ZP_06999212.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
 gi|298273040|gb|EFI14606.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
          Length = 885

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 7/238 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L    E    +D +K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y  
Sbjct: 494 KRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYN 550

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++A++  LL L+N+ILDL+ +++G ++ ++    L++L  EV  +   +  +    +  
Sbjct: 551 IVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYE 610

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            SD  L     D+ R+ Q+ S ++ NA+ F+ +GS        DN   +F V + G+ I 
Sbjct: 611 SSDESL-MIETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDN-QIVFHVTDTGTGIE 668

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    VF RF    +  Q  G GLGLSI +S +   GG +S++S     TT    +P
Sbjct: 669 PEKVGRVFERFAKLNNHAQ--GTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724


>gi|163789833|ref|ZP_02184269.1| two-component sensor histidine kinase [Carnobacterium sp. AT7]
 gi|159874773|gb|EDP68841.1| two-component sensor histidine kinase [Carnobacterium sp. AT7]
          Length = 419

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 176/362 (48%), Gaps = 39/362 (10%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           E I+HL  GV +      IK+ NPA   +   + ++L   +++    AT S        +
Sbjct: 83  ELINHLVIGVMLIDEHRIIKMVNPAMSVILGEDVSQLVGNSYVE---ATKS--------Y 131

Query: 498 DLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPL----PNAQTMLTFV-NVTDSVRA 551
            L   I  ++  +E+++ +       D +++ +I+P+    P  Q ++  + ++T+    
Sbjct: 132 GLSHMIEMAYQKNEQQNDEIYFYYPKDKIVDANIVPIDGKEPGEQNLIVLLYDITE---- 187

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQY 609
                     +R+ ++++  FV + S+EL++P+T + GF++ L     G++  K+   Q+
Sbjct: 188 ----------IRRLEKVRTDFVTNASHELKTPVTALKGFSETLLD---GAMEDKEVLKQF 234

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E + A S+ L  LVNDIL+L+ ++   + L    I L + +    Q +  K  E  +++
Sbjct: 235 LEIMLAESSRLDFLVNDILELSKLEQKQVPLKIEEINLTEAVISTFQLVKQKADEKKMKL 294

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +I +  L     D  RL QI + +++NA+ ++ +   V +   ++N   +  V +NG  
Sbjct: 295 NIIEEDNL-FITGDSSRLKQILANLINNAVVYTQESGEVEVTIKKENNFAVIKVSDNGIG 353

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPED    +F RF  V  A      G GLGLSIV+  +    G +++ S     TT   +
Sbjct: 354 IPEDEQDRIFERFYRVDKARSRNSGGTGLGLSIVKYLVENLNGFITVESKLGLGTTFIVK 413

Query: 788 IP 789
           +P
Sbjct: 414 LP 415


>gi|160885771|ref|ZP_02066774.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
 gi|156108584|gb|EDO10329.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
          Length = 563

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 143/258 (55%), Gaps = 12/258 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++S+E+R+PL  I+GF++++  + 
Sbjct: 310 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMICQT- 368

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+  ++   +N+L+  + + +
Sbjct: 369 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 426

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
             K    +++I             DR RL Q+     +NA+ F+ KGS  +   ++ A+D
Sbjct: 427 QEKNSSPDVQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 486

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  F VK+ G  IP D    VF RFV  N+     +G GLGL+I    +   GG + +
Sbjct: 487 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 541

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   +    RIP  E
Sbjct: 542 ESKEGEGSRFWFRIPRSE 559


>gi|152993487|ref|YP_001359208.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
 gi|151425348|dbj|BAF72851.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
          Length = 1065

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 129/238 (54%), Gaps = 12/238 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+E K+ F+ ++S+E+R+PL  I+GFT++L+++    LN +Q +++  I  SS  LL++
Sbjct: 410 QANEAKSLFLANMSHEIRTPLNGIVGFTEILRST---DLNDEQREFLSIIDKSSENLLSI 466

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682
           +N+ILDL+ +++  +++        +      ++ A    E NI +    D  +      
Sbjct: 467 INNILDLSKIESNNIEIENVVFDAAEEFESAVETYAVGAAEKNIDLNFYMDPTINPKLKG 526

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFI----FSVKNNGSSIPEDMCK 736
           D  ++ +I   +LSNA+ F+S G  V L+    +D  D +    FSV++NG  + +D  +
Sbjct: 527 DPTKIKEILINLLSNAIKFTSYGGEVNLEIHQVQDEDDRMPRIKFSVQDNGIGMTQDQQE 586

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F+ F        R+  G GLGL+I   F+ L GG + + S+ +  TT    IP +E
Sbjct: 587 RIFDAFSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAKDQGTTFFFTIPFEE 644


>gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 571

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 176/363 (48%), Gaps = 41/363 (11%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           E I+HL  GV +      IK+ NPA   +   +  +L   +++    AT S        +
Sbjct: 235 ELINHLVIGVMLIDEHRTIKMVNPAMSVILGEDVTKLVGNSYVE---ATKS--------Y 283

Query: 498 DLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPL----PNAQTMLTFV-NVTDSVRA 551
            L   I  ++  +E+++ +       D +++ +I+P+    P  Q ++  + ++T+    
Sbjct: 284 GLSHLIEIAYQKNEKQNDEIYFYYPKDKIVDANIVPIDGKEPGEQNLIVLLYDITE---- 339

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQY 609
                     +R+ ++++  FV + S+EL++P+T + GF++ L     G++  K+   Q+
Sbjct: 340 ----------IRRLEKVRTDFVTNASHELKTPVTALKGFSETLLD---GAMEDKEVLKQF 386

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E + A S+ L  LVNDIL+L+ ++   + +N   + L + +    Q +     E  +++
Sbjct: 387 LEIMLAESSRLDFLVNDILELSKLEQKQVPMNMQEVNLTEAVLSTFQLVKQTADEKEMKL 446

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +I +  L  F+  D  RL QI + +++NA+ ++     V +   ++N   +  V +NG 
Sbjct: 447 NLIEEDTL--FITVDSSRLKQILANLINNAVVYTQDSGEVTVTIRKENNQAVILVSDNGI 504

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPED    +F RF  V  A      G GLGLSIV+  +    G +++ S     TT   
Sbjct: 505 GIPEDEQDRIFERFYRVDKARSRNSGGTGLGLSIVKYLVENLNGSIAVESKLGLGTTFIV 564

Query: 787 RIP 789
           R+P
Sbjct: 565 RLP 567


>gi|288556019|ref|YP_003427954.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547179|gb|ADC51062.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 599

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 131/250 (52%), Gaps = 13/250 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V  +V   R +TE+    R+ D+++  F+ +VS+ELR+P++ + G+++ +     GS   
Sbjct: 347 VRGAVAVIRDMTEE----RRHDKLRKDFIANVSHELRTPVSMLQGYSEAIIDDIAGSEED 402

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K+ ++ + I   S  +  LVN++LDLA ++AG ++L+   + L    + + +       +
Sbjct: 403 KK-EFAKIIYDESLRMGRLVNELLDLARMEAGHIELHMEAVELGAFSDRIVRKFQGYAKD 461

Query: 665 NNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             +  R+  + DG   SF  D  R+ Q+ + ++ NA+  + +   V +K   +     F 
Sbjct: 462 EGVALRLDHVEDGYTNSF--DPDRIEQVLTNLIHNAIRHTGENGRVTVKVRSNEYGVKFD 519

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779
           V + GS IPE+    VF RF     A    R G GLGL+I ++ ++ H G +S+ S  DE
Sbjct: 520 VIDTGSGIPEEDLPYVFERFYKADKARTRARGGTGLGLAIAKNIVDAHKGQISVHSKIDE 579

Query: 780 GVTTINCRIP 789
           G TT +  IP
Sbjct: 580 G-TTFSFFIP 588


>gi|237719384|ref|ZP_04549865.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451244|gb|EEO57035.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 570

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 143/258 (55%), Gaps = 12/258 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++S+E+R+PL  I+GF++++  + 
Sbjct: 317 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 375

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+  ++   +N+L+  + + +
Sbjct: 376 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 433

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
             K    +I+I             DR RL Q+     +NA+ F+ KGS  +   ++ A+D
Sbjct: 434 QEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 493

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  F VK+ G  IP D    VF RFV  N+     +G GLGL+I    +   GG + +
Sbjct: 494 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 548

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   +    RIP  E
Sbjct: 549 ESKEGEGSRFWFRIPRSE 566


>gi|229590396|ref|YP_002872515.1| putative aerobic respiration sensor-response protein; histidine
           protein kinase/phosphatase, sensor for arcA [Pseudomonas
           fluorescens SBW25]
 gi|229362262|emb|CAY49164.1| putative aerobic respiration sensor-response protein; histidine
           protein kinase/phosphatase, sensor for arcA [Pseudomonas
           fluorescens SBW25]
          Length = 771

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 7/233 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL     G   
Sbjct: 376 DITDRRAAEMALGNAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSAGG-- 433

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  +V +I  +   LL L+N++LD+A ++AG + LN   I L   L E    ++    
Sbjct: 434 --QKAHVGHILRAGQHLLTLINEVLDIAKIEAGRLPLNIEPIRLAGALQEALALVSPMAA 491

Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +  I+++ +      +G   AD QRL Q+   +LSNA+ ++     V ++   +      
Sbjct: 492 DAGIQLQPLPALAADIG-IAADPQRLTQVLLNLLSNAIKYNQPQGQVSIEVKVEGPRIGV 550

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +V + G  IP D    +F  F          G GLGL++ +S +    G +S+
Sbjct: 551 AVCDTGKGIPADKLGQLFKPFERLGADPNVEGSGLGLALSKSLLEKMDGQLSV 603


>gi|150019623|ref|YP_001311877.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906088|gb|ABR36921.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 979

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 120/235 (51%), Gaps = 2/235 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  +  R++    E   KA + K+ F+  +S+ELR+PL  I+GF+ +L+      LN
Sbjct: 577 DITEQKKMARSIITAKEEAEKASKAKSEFLSSMSHELRTPLNAILGFSQILELDPESPLN 636

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             QSQ V+ IS + + LL L+N+ILDLA +++G + ++  ++ +  ++ E    I     
Sbjct: 637 PSQSQSVKEISKAGSHLLELINEILDLAKIESGKLSISIESVPIKHVIEEAISIIKPFAD 696

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           ++ I+I          FV AD  RL QI   +LSNA+ ++ K   VI    + N  + F 
Sbjct: 697 KHKIKIINYPIDNSDEFVSADHTRLKQILLNLLSNAIKYNKKDGQVIFYHDKVNDKYRFH 756

Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V + G  +     + +F  F   N       G G+GL++ +    L  G + ++S
Sbjct: 757 VIDTGIGLSNSDLELIFKPFYRLNRINNSIEGTGIGLAVAKQLTELMNGEIFVTS 811


>gi|330973917|gb|EGH73983.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 504

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 105 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 162

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   + +I  +   LL L+N++LD+A ++AG + L    + L+++L E    ++    
Sbjct: 163 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAA 220

Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K + +   ++G  VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 221 DANIELKPLPNLPDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIAEQVTI 279

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ DEG
Sbjct: 280 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 339

Query: 781 VTTINCR 787
                CR
Sbjct: 340 -----CR 341


>gi|326792832|ref|YP_004310653.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326543596|gb|ADZ85455.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 583

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 121/219 (55%), Gaps = 8/219 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           +K D+++  FV +VS+ELR+PLT +  +T+ L     G+++ K++   ++  +   +  +
Sbjct: 348 QKLDQMRKEFVANVSHELRTPLTTVKSYTETLLD---GAIDEKETAMHFLGVMEKEADRM 404

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+L+L+ +D   ++L +  + L  LL EV ++    + ++  +++V  D K   F
Sbjct: 405 TALVQDLLELSRIDNKQIQLEFVRLNLKPLLEEVLEAQYIHIIKHGHQLEVGYDKKEEYF 464

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  D  R+ QI   ILSNA+ +S +  T+ +   ++N   I  + + G  IPE+  + +F
Sbjct: 465 IEGDLSRIRQILHNILSNAIKYSPEPGTLGVYMKKENAYVIVEITDTGMGIPEEDLERIF 524

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  V  A   +  G GLGLSI +  + LHGG + I S
Sbjct: 525 ERFYRVDKARSRKMGGTGLGLSIAKELMLLHGGDIKIES 563


>gi|270293993|ref|ZP_06200195.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275460|gb|EFA21320.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 615

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E AL E  +   ++  +K++F+ ++S+E+R+PL  I+GF+D+L  S  G+   +Q  Y 
Sbjct: 378 SEGALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVL--SAGGASEEEQRGYF 435

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +S +LL L+NDILD++ ++A  + L+  +  +  +  +V  S+A      N +  
Sbjct: 436 EIIRTNSDLLLRLINDILDVSRLEADRVILSLESCNVVQICQQVVASVAQARRSTN-QFL 494

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGS 728
              + ++     D QRL Q+   +LSNA  F+ +G T+ LK   D      +FSV + G 
Sbjct: 495 FECEREVVEMRTDVQRLQQVVINLLSNADKFTKEG-TITLKLEPDTARNVAVFSVTDTGC 553

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            IP D  K VF RF       Q  G GLGLSI +  +   GG + I  +
Sbjct: 554 GIPLDKQKRVFERFEKLNEYVQ--GTGLGLSICKLTVEKWGGEIWIDPA 600


>gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78]
 gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78]
          Length = 1928

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 1296 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFA 1355

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M+++ + I L  L++ V+ +      E N+   
Sbjct: 1356 ETIYGAGSDLLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFS 1415

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   +I  A  D  D I       
Sbjct: 1416 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEA 1475

Query: 721  ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                        FSV + G  I E   + +F  F        R+  G GLGLSI      
Sbjct: 1476 GSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1535

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1536 LLGGEIDAQSQPGRGSTFTLYLP 1558


>gi|300702723|ref|YP_003744323.1| sensor protein [Ralstonia solanacearum CFBP2957]
 gi|299070384|emb|CBJ41679.1| Sensor protein [Ralstonia solanacearum CFBP2957]
          Length = 994

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 14/248 (5%)

Query: 552 ERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           ERA  +  E  R+A E     K+ F+  +S+E+R+P+  ++G  +LL  + L     +Q 
Sbjct: 352 ERARADAQETARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPL---EREQQ 408

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + V  +  SS  LL++++DILD A ++AG + +  +   L +L +     +A++ HE ++
Sbjct: 409 RMVTLMQESSRALLHILDDILDYAKIEAGHLSVTPTQTDLRELFDSTVGLLASRAHERSL 468

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFS 722
            ++V  D  + + V+ D  RL Q+ S +LSNA+ F+ +GS  +  A    A D    I  
Sbjct: 469 SVRVEVDATVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACVGTAADTAHLIIR 528

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G  I  +   ++F  FV   +   RR  G GLGL+I      L GG + + S    
Sbjct: 529 IADTGIGIAPEAQATLFTPFVQADNPAARRHGGTGLGLAISRQLARLMGGSLDMDSKPGV 588

Query: 781 VTTINCRI 788
            TT+  R+
Sbjct: 589 GTTLTLRL 596


>gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 908

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 134/253 (52%), Gaps = 14/253 (5%)

Query: 535 NAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           N   ML  VN  +   ++  ++  E       A  IK+ F+ ++S+ELR+P+  +IG + 
Sbjct: 219 NRNKMLLLVNSELEQEIQKLKSAEEARSHAEAASHIKDEFLANMSHELRTPMNAVIGLSH 278

Query: 593 L-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           L L+T     L+ KQ  Y++ I +S+  LL ++NDILD++ ++AG M+L+     L+++L
Sbjct: 279 LCLQTE----LSDKQQDYLQKIHSSAKSLLGILNDILDVSKIEAGKMELDRIAFELDEVL 334

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI- 709
             +   +  K HE N+ + + +   + S  V D  RL Q+   +  NA+ F++KG  V+ 
Sbjct: 335 GNLSTILWAKSHEKNLELLLETAPDVPSVLVGDPLRLGQVLINLAGNAVKFTAKGEVVVS 394

Query: 710 LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           +   ++ GD +   F+VK+ G  + +     +F  F        R+  G GLGL+I +  
Sbjct: 395 IDLEKEEGDQVVLRFAVKDTGIGMSQSEIDKLFRPFTQADTSITRKFGGTGLGLTISKRL 454

Query: 765 INLHGGHVSISSS 777
           I + GG + + S+
Sbjct: 455 IEMMGGKIWVEST 467


>gi|126659304|ref|ZP_01730440.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619386|gb|EAZ90119.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 649

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 138/265 (52%), Gaps = 22/265 (8%)

Query: 541 TFVNVTDSVRAE----RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDL 593
              ++T S +AE    + L E  +A  +A+    +K+ F+  +S+ELR+PL  IIG+  L
Sbjct: 242 AIADITASKQAELERIQLLHEARQAQEEAERLNHVKDEFLATLSHELRTPLNAIIGWMQL 301

Query: 594 LKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLL 651
           L++   G+LN  Q +  +E I  ++ +   L+ D+LD++ +  G +KL    I V++ +L
Sbjct: 302 LRS---GTLNEDQFNTGLEVIERNANVQTQLIEDLLDVSRIICGTLKLEAQPINVISVIL 358

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           + +  +++      NI I +    +      D++RL Q+F  +L NA+ F+    ++ ++
Sbjct: 359 SSID-TVSPTAKAKNININLQLSSQTIEINGDKERLQQVFWNLLINAVKFTPIDGSITIE 417

Query: 712 AARDNGDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              +N    F  + + G  I  D+   +F+RF    H+   R   G+GLGL+IV   + +
Sbjct: 418 GGEENNQMAFIRITDTGKGISGDVLPHIFDRFRQAEHKSSTRTQGGLGLGLAIVRHIVEM 477

Query: 768 HGGHVSISSSDEGV---TTINCRIP 789
           HGG  S+ +  EG+   +T    +P
Sbjct: 478 HGG--SVMAESEGIDKGSTFTVELP 500


>gi|313157976|gb|EFR57382.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 474

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 127/247 (51%), Gaps = 4/247 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ D   +E  L    +  R++D +K++F+ ++S+E+R+PL  IIGF +LL +  +    
Sbjct: 211 SIHDHKISEDGLRAARDKARESDRLKSAFLANMSHEIRTPLNAIIGFANLLTSEDIPFSE 270

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++ +Y   I+++   LL L++DILDL+ +++  M+ ++    L+ LL ++ Q+    M 
Sbjct: 271 AEKQEYSRLITSNGDQLLRLISDILDLSKIESNTMEFHFGEHSLHALLTDIYQAQRLCMP 330

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFS 722
           E  +R+++         V D  RL Q+ + +++NA  F+  GS T   ++ +        
Sbjct: 331 E-GVRLRLDMPQADTPIVTDASRLKQVVNNLINNAAKFTDDGSITFGFRSPQGCEQVELF 389

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  I ++    +F RF         +GVGLGLSI  +     GG +S+ S     T
Sbjct: 390 VHDTGKGIAQEHLDRIFERFYKAD--SFVKGVGLGLSICRTITEYLGGAISVESESGKGT 447

Query: 783 TINCRIP 789
               + P
Sbjct: 448 RFTIQHP 454


>gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 809

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+E+R+PL  I G   LL+T++L   +S Q +YV+   +S++ L  L+
Sbjct: 425 ANRAKSEFLANMSHEIRTPLNGITGMMQLLQTTRL---DSNQKEYVDLALSSASRLTRLL 481

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           +DILDL+ V+AG M +      + +L   V +    +  E  I ++   D  L S  + D
Sbjct: 482 SDILDLSRVEAGRMVILEEEFNVQELCRSVCELFRIQAGEKGIELEYTLDPSLPSRLMGD 541

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL QI   ++ N++ F+ +G   I     K   D    + +V + GS I  +    +F
Sbjct: 542 ETRLQQILFNLVGNSLKFTREGRVRINWTLQKRGLDRHQVLITVTDTGSGIAPEKLDDLF 601

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             FV       RR  G GLGLSIV   ++L  G +S+ S+    T     +P K
Sbjct: 602 QPFVQEDGSSTRRHEGAGLGLSIVSRLVDLMHGTISVDSAPGEGTAFYIFLPLK 655


>gi|168036813|ref|XP_001770900.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162677764|gb|EDQ64230.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 472

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 12/234 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  EA+  A+  K+ F+  +S+ELR+P+T ++G  DLL  +KL     +Q + V+ +  S
Sbjct: 70  EACEAIEAANRAKSQFLAMMSHELRTPMTGVLGMLDLLHLTKL---EPQQQELVKIMQES 126

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L+ ++N+ILD   ++AG + L      L DL+ +V      K+ E  +R   + +G 
Sbjct: 127 AEGLMQVINNILDFCKMEAGRLFLEEIDFSLGDLVEQVATLYEKKLQEKGLRF--VINGA 184

Query: 677 LGSFVA---DRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFIFSVKNNGSSI 730
            G+ VA   D  RL QI   ++SNA+ F+ KG T+ L     +  N      V + GS I
Sbjct: 185 AGATVAVRGDPVRLRQIIVNLVSNAIKFTEKG-TITLSWRYVSGKNHYLEVKVADTGSGI 243

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            +++  ++F    + A R    G GLGL+I +  + L  G +    S+ G  TI
Sbjct: 244 AKELLGTLFTASQAGAPRRDSSGTGLGLAICKGLLELMKGKMLPVISEMGKGTI 297


>gi|21225602|ref|NP_631381.1| two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
 gi|8246822|emb|CAB92873.1| putative two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
          Length = 1331

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 751  QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 810

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ +      +  +  
Sbjct: 811  AGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEATFRPMTSQKGLEF 870

Query: 670  KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN----------G 717
             V+ + G     + D  RL Q+   +LSNA+ F+ +G   + ++ A D+           
Sbjct: 871  TVVTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELAVEPAPDDEVPGGVVRGGP 930

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F VK+ G  IPE   +S+F  F        R+  G GLGLSI      L GG V++ 
Sbjct: 931  VVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSITREIAQLLGGAVTVD 990

Query: 776  SSDEGVTTINCRIP 789
            S+ +  +T    +P
Sbjct: 991  STPDRGSTFTLYLP 1004


>gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
 gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
          Length = 2013

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 1375 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFA 1434

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M+++ + I L  L++ V+ +      E N+   
Sbjct: 1435 ETIYGAGSDLLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFS 1494

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   +I  A  D  D I       
Sbjct: 1495 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEA 1554

Query: 721  ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                        FSV + G  I E   + +F  F        R+  G GLGLSI      
Sbjct: 1555 GSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1614

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1615 LLGGEIDAQSQPGRGSTFTLYLP 1637


>gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1403

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 555  LTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            L ++ +A R    KA+ IK+ F+  +S+ELRSPL  I+G+  LL+T KL     KQ+  +
Sbjct: 1010 LLQREQAARTEAEKANRIKDEFLAVLSHELRSPLNPILGWAKLLQTKKLDGATFKQA--L 1067

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  ++ +   L+ D+LD++ +  G + LN   + L  ++    +++    +  +I I+
Sbjct: 1068 STIERNAQLQAQLIEDLLDVSRILQGKISLNPIPVNLASIIRHSIETVYLAANAKSIDIQ 1127

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
               D  +G  + D  RL QI   +LSNA+ F+S G  V +           +V + G  I
Sbjct: 1128 TTLDETVGQILGDPARLQQIVWNLLSNAVKFTSTGGRVEVLLESVGQSAQITVSDTGKGI 1187

Query: 731  PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
              +    VF+ F        R+  G+GLGL+IV   + LHGG V   S  E
Sbjct: 1188 TSEFLPYVFDYFRQADSTTTRKFGGLGLGLAIVRHLVELHGGTVGAESPGE 1238



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 5/237 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EAL + D  K  F  +VS+E R+PLT ++G  + + T K   L   Q + +E +  +
Sbjct: 319 KRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPIEDVLTDKDEPLGPSQQERIEIVQRN 378

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL LVN +LD + ++AG ++  Y    L+    E+     + +    +R+ V     
Sbjct: 379 GLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASVFRSTIERAGMRLMVNCPPL 438

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                 DR+   +I   +LSNA  F+  G  +V L+  + +     SV + G  IPE   
Sbjct: 439 PEPVYVDREMWEKIVLNLLSNAFKFTLNGEISVSLEWVKHS--VKLSVNDTGIGIPEAEI 496

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F RF  V  A      G G+GLS+V+  + LH G + + S +   T     IP+
Sbjct: 497 PLLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHQGSIDVVSVEGLGTCFTIFIPT 553


>gi|183219905|ref|YP_001837901.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778327|gb|ABZ96625.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 596

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 132/260 (50%), Gaps = 12/260 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L + +T+L  +N T     ++ L E  E    A   K+ F+  +S+E+R+PL  +IG T 
Sbjct: 262 LNDNKTILNSLNTT-----QKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQ 316

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  +    L+++Q  Y++ I+ +   LLN++NDILD + +DAG + +  +   L +L+ 
Sbjct: 317 ILFET---DLDAEQKSYLKTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVR 373

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           E+    A + +   +  K  I+       V+D  R+ QI   ++ NA+ F+  G  VIL 
Sbjct: 374 EIFDLFAIEANTKQLEFKFEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTETG-FVILS 432

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             ++    +F +K++G  I  +   S+F +F  V  +   +  G GLGL+I E  + L  
Sbjct: 433 IKKEEHSILFQIKDSGIGISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLE 492

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S     +T  C  P
Sbjct: 493 GKIGVESVKGVGSTFWCSFP 512


>gi|160937188|ref|ZP_02084550.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613]
 gi|158439752|gb|EDP17501.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613]
          Length = 1236

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 126/252 (50%), Gaps = 14/252 (5%)

Query: 544  NVTDSVRAERALTEK-NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            +VT+++ AER   E   +AL  A+E    K+ F+  +S+++R+P+  I+G T L +    
Sbjct: 828  DVTETMTAERRSKETLEQALALAEEANRAKSDFLSSMSHDIRTPMNAIMGMTTLARAHL- 886

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 K    +  I+ SS  LL+L+NDILD++ ++   + LN   + L+DLL ++   I 
Sbjct: 887  -DEREKVENCLRKITLSSRHLLSLINDILDMSKIEQSKITLNNDKVFLSDLLEQLYSIIG 945

Query: 660  TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAA 713
             +  E  ++  V +   +   F  D  R+ QI   IL NA+ F+  G TV      L   
Sbjct: 946  QQAQEAGLQFDVRTSNIIHPYFYGDALRINQILINILGNAVKFTPDGGTVTFLTEELPTI 1005

Query: 714  RDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            +  G   + F++++ G  +PE     +F  F  N +     G GLGLSI +  I L GG 
Sbjct: 1006 KGPGYVRYCFTIRDTGIGMPESFLSHLFEPFTRNRNTEHVEGSGLGLSITKGLIELMGGE 1065

Query: 772  VSISSSDEGVTT 783
            + + S +   TT
Sbjct: 1066 LLVESRERAGTT 1077


>gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1293

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 20/233 (8%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K+ F+  +S+E+R+P+  ++G T+LL  +    L  +Q ++ E I AS   LL L
Sbjct: 727 EANRAKSVFLATMSHEIRTPMNAVVGMTELLLDT---PLTPEQREFTETIRASGNQLLGL 783

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +NDILDL+ +++G ++L    + L  ++    + +A + H   + +    DG L   +  
Sbjct: 784 INDILDLSKIESGRVELEEGPVRLRLVIERCLELVAARAHAKGLELAARLDGTLPEVIRG 843

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------------FSVKNNGSS 729
           D  RL QI + +LSNA+ ++  G  V+L A+   GD                +V+++G  
Sbjct: 844 DDLRLRQILTNLLSNAVKYTDTGE-VVLTASWHAGDLSAPLDSPKRSPRLEIAVEDSGIG 902

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           IP+     +F  F      G RR  G GLGL+I    +   GG + + +   G
Sbjct: 903 IPDAQKPRLFQAFQQLDAAGHRRTGGTGLGLAITRKLVEKMGGTIHVENRPGG 955


>gi|289767250|ref|ZP_06526628.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
 gi|289697449|gb|EFD64878.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1333

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 753  QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 812

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ +      +  +  
Sbjct: 813  AGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEATFRPMTSQKGLEF 872

Query: 670  KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN----------G 717
             V+ + G     + D  RL Q+   +LSNA+ F+ +G   + ++ A D+           
Sbjct: 873  TVVTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELAVEPAPDDEVPGGVVRGGP 932

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F VK+ G  IPE   +S+F  F        R+  G GLGLSI      L GG V++ 
Sbjct: 933  VVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSITREIAQLLGGAVTVD 992

Query: 776  SSDEGVTTINCRIP 789
            S+ +  +T    +P
Sbjct: 993  STPDRGSTFTLYLP 1006


>gi|255601763|ref|XP_002537746.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
 gi|223515241|gb|EEF24637.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
          Length = 263

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 129/256 (50%), Gaps = 16/256 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+ AL EK   L  + + K+ F+ ++S+ELR+PL +++     L  +  G+L++KQ ++
Sbjct: 8   QAKLALEEKATQLALSSKYKSEFLANMSHELRTPLNSLLILAQQLSDNPEGNLSAKQVEF 67

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S + LL L+NDILDL+ +++G + L+ S    ++L N V ++        ++  
Sbjct: 68  AKTIHGSGSDLLTLINDILDLSKIESGTVTLDVSEYRFSNLRNYVDRTFRHMAEAKHLGF 127

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGD------- 718
            V ++D    + + D  RL Q+   +LSNA  F+S G+   T+ L  +    D       
Sbjct: 128 SVELADNLPTAVMTDTTRLQQVLKNLLSNAFKFTSHGNVSLTISLVTSGWTADHPHLLHA 187

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                FSV++ G  IP D  + +F  F        R+  G GLGLSI      L GG + 
Sbjct: 188 DAVLAFSVRDTGVGIPADKLQLIFEAFQQADGSTARKYGGTGLGLSISRELARLLGGEIR 247

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    +T    +P
Sbjct: 248 VESTVNIGSTFTLYLP 263


>gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 657

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 123/239 (51%), Gaps = 16/239 (6%)

Query: 549 VRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           V  ER  L EK EA   A+ IK+ F+  VS+ELR+PL  I+G++ LL+T KL     K  
Sbjct: 274 VEEERIQLLEKAEA---ANRIKDEFLAIVSHELRTPLNPILGWSKLLRTRKLN--QDKVD 328

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT---KMHE 664
           Q +E I  ++++   L++D+LD++ +  G  KLN  T+ + DL+  ++ +I T       
Sbjct: 329 QALETIERNASLQAQLIDDLLDVSRILRG--KLNLQTLRV-DLVRVIQAAIETMRLAAAA 385

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +I I    D  +G    D  RL Q+   +LSNA+ F+ KG  + ++    +      V 
Sbjct: 386 KSIEIDTQLDSTVGFVSGDPNRLQQVVWNLLSNAVKFTPKGGRITVRLQEIDSQAQIQVS 445

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  I  D    +F+ F        R   G+GLGL+IV   I LHGG +   S  EG+
Sbjct: 446 DTGQGISPDFFPYIFDYFRQENSTTTRSVGGLGLGLAIVRHLIELHGGRIEAES--EGI 502


>gi|162457113|ref|YP_001619480.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161167695|emb|CAN99000.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 639

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T  +V D  R E+   ++ E L +A+E   +K+ F+  VS+ELR+PLT I+G+  + +  
Sbjct: 238 TCTDVDDQKRLEQ---QRAEVLAQAEETSRLKDEFLAIVSHELRTPLTAILGWARMQR-- 292

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              S      + +E I  ++     L+ +IL+ + +  G ++L      +N+L+     +
Sbjct: 293 ---SRPELAPKAMEVIERNAEAQARLIEEILESSRIVTGKIRLYPRNASVNELVRTAVDA 349

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +        + + V  D  +G  V D  RL Q+ + +L NA+ F+  G  V L+ A   G
Sbjct: 350 VRPAADAKAVALDVRLDPGVGEIVCDPDRLQQVVTNLLVNAVKFTPGGGQVGLQTALHPG 409

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +V + G  I       VF RF     A   Q  G+GLGL+IV+  + LHGG V   
Sbjct: 410 GVEVTVTDTGKGISSAFLPHVFERFRQAEAATTRQHGGLGLGLAIVKYLVELHGGAVRAQ 469

Query: 776 SSDEGVTTINC-RIPSK 791
           S  EG     C R+P +
Sbjct: 470 SDGEGKGASFCVRLPVR 486


>gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 934

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 21/247 (8%)

Query: 555 LTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L EK   L +A EI       K+ F+ ++S+ELR+PL  I+GF  ++  S+  +L+ +  
Sbjct: 445 LKEKTTQLEQAKEIAEAANQAKSLFLANMSHELRTPLNAILGFAQIMHRSQ--TLSQEHQ 502

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + V  I+ S   LL+L+ND+LD++ ++AG + L+ + I L  LL+EV      +     +
Sbjct: 503 ENVNVINRSGEYLLSLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYLRAESKQL 562

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNG 717
           ++ +  D  +  ++  D ++L Q+   +LSNA+ F+ +G         +  + K      
Sbjct: 563 QLDIERDNNVPRYLYTDGKKLRQVLINLLSNALKFTQEGGIHLYINDITPPLSKETMTEV 622

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISS 776
              F V++ G  I E+    +F  F   A     + G GLGL I   F+ L GG +S+ S
Sbjct: 623 ILEFQVRDTGPGIAENEMDKLFEAFTQTATGIASQEGTGLGLPISRKFVQLMGGDISVQS 682

Query: 777 S-DEGVT 782
              EG T
Sbjct: 683 KVGEGTT 689


>gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Escherichia coli O157:H7 str. EDL933]
 gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str.
           Sakai]
 gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 423 AICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 482

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L        + V  ++ SS++LL +++DILD + +++  + +        +++N +  +
Sbjct: 483 ELP---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITAN 539

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    R +
Sbjct: 540 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVRAD 597

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 598 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 657

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 658 VDSEPGMGSQFTVRIP 673


>gi|46107708|ref|XP_380913.1| hypothetical protein FG00737.1 [Gibberella zeae PH-1]
          Length = 1370

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 125/219 (57%), Gaps = 14/219 (6%)

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVND 626
            +K+ F+ ++S+E+R+P+T ++G  +LL    +G  L+ +Q +YVE I +S+T LL ++ND
Sbjct: 796  LKSQFLANMSHEIRTPITGVLGMAELL----MGMELDQEQQEYVENIQSSATSLLTVIND 851

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV--AD 683
            ILD + V++G + +      L+ ++ EV + +   +   N+  +  + DG     V   D
Sbjct: 852  ILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDVGDGIENDLVVIGD 911

Query: 684  RQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              R+ QI + +L+N++ F+++G    S V  K   +  +  FSV+++G  I +D+ K +F
Sbjct: 912  PGRVRQILTNLLTNSIKFTNQGYVRFSVVAEKETSETIEVKFSVEDSGIGIQDDVRKKLF 971

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              F        RR  G GLGL+I ++ ++L  G +++ S
Sbjct: 972  QPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRITLES 1010


>gi|328958773|ref|YP_004376159.1| sensor protein VanS [Carnobacterium sp. 17-4]
 gi|328675097|gb|AEB31143.1| sensor protein VanS [Carnobacterium sp. 17-4]
          Length = 379

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 123/232 (53%), Gaps = 4/232 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  +   +  +Y       +  +  
Sbjct: 143 RQIEQSKDELITNVSHDIRTPLTSIIGYLGLIEERRYQN-EEELLKYTHTAYTKAKQMKV 201

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV D+ +   V      LN S   +  LL ++      +  + N+ I+V++  +     A
Sbjct: 202 LVEDLFEYTKVRQTTTPLNLSEFDMVQLLEQLVADFELEAEKRNMVIEVVTAYESVLMEA 261

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L+++F+ ++SNA+ +   G  V ++  +   + I SV N+G  IP+     +F+RF
Sbjct: 262 DTEKLVRVFNNLISNALKYGKGGKKVFIEVQKAGKEAIISVNNDGQPIPQKSLDQLFDRF 321

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             V  +   +  G GLGL+I +S + LHGG++  +SSD  +T     +P K+
Sbjct: 322 YRVEESRSQETGGTGLGLAIAQSIVALHGGYIY-ASSDRNLTRFVMHLPLKQ 372


>gi|311894136|dbj|BAJ26544.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1322

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 13/241 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A R L E+ + L +    K+ F+ ++S+ELR+PL +++    LL  +  G+L  KQ +Y
Sbjct: 767  QARRELEERAQQLTRTSMYKSEFLANMSHELRTPLNSLLILAQLLAQNTGGNLTGKQVEY 826

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             E I ++ + LL L+NDILDL+ V+AG + +      L +LL+ V  +      E  +  
Sbjct: 827  AEVIRSAGSDLLQLINDILDLSKVEAGKLDVTVEPFELRELLDYVDTTFRPLAAEKGLDF 886

Query: 670  KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAAR---------DNGD 718
            ++  + G       D+ RL QI   +LSNA+ F+ +G   + ++ AR         D   
Sbjct: 887  RITAAPGAPEQLYTDQARLRQILRNLLSNAVKFTDRGFVELAVEPARPGELPTERSDLAA 946

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              F V+++G  I  D  +S+F  F        R+  G GLGLSI      L GG VS  S
Sbjct: 947  VAFRVQDSGIGIGADHLESIFGAFQQADGTTSRKYGGTGLGLSISRELARLLGGAVSAES 1006

Query: 777  S 777
            +
Sbjct: 1007 A 1007


>gi|260663756|ref|ZP_05864643.1| two-component system histidine kinase [Lactobacillus fermentum
           28-3-CHN]
 gi|260551705|gb|EEX24822.1| two-component system histidine kinase [Lactobacillus fermentum
           28-3-CHN]
          Length = 380

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 144/294 (48%), Gaps = 37/294 (12%)

Query: 516 GTLELLSDSVLEYSIIPL---PNAQTMLTFVN-----VTDSVRAERALTEKNEALRKADE 567
           G L  ++   LE+ I P     N Q ++T VN     +T +++ ERA +EK+        
Sbjct: 101 GELHYIAQGHLEHRI-PFRVNGNQQHVITSVNALVDTITQAMQEERA-SEKS-------- 150

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI-------L 620
            K+  + +VS++LR+PLT+IIG+        LG +   Q Q  E I   S I       +
Sbjct: 151 -KDELITNVSHDLRTPLTSIIGY--------LGLIEDHQYQSEEDIVKYSHIAYDKAKQM 201

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            NLV D+ +   V      +N  T+ L  LL +V  S   +  +  + I V  +    S 
Sbjct: 202 KNLVEDLFEYTKVQQHGAPVNLMTVDLGQLLEQVGASFELEADKKGMAINVSCEPTPLSI 261

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD ++L ++FS +++NA+ +    S + L A +     + +V ++G  IP +  K +F 
Sbjct: 262 TADPEKLGRLFSNLVANALKYGHGASYIHLTAKQLGEKVVITVADDGEKIPAESVKHLFE 321

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF  V ++      G GLGL+IV+S + LH G V+ + SD+  T     +P K+
Sbjct: 322 RFYRVESSRNKATGGTGLGLAIVQSIVELHHGSVT-ARSDDQETAFVVTLPVKQ 374


>gi|257484380|ref|ZP_05638421.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 283

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 7/236 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 35  DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 92

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++    
Sbjct: 93  --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAA 150

Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K +     KLG  VADRQRL+Q+   +LSNA+ ++     V ++  + +     
Sbjct: 151 DANIELKALPQLPDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVTV 209

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++
Sbjct: 210 SVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNT 265


>gi|82702416|ref|YP_411982.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410481|gb|ABB74590.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 570

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 5/229 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  +  K EA  KA+  K+ F+  +S+ELRSPL  ++GF  L+++S      ++ +   E
Sbjct: 311 EELIKAKTEA-EKANLAKSDFLSSMSHELRSPLNVMLGFAQLMESSSPPPTFTQMTMLKE 369

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+++   LL L+N ILDLA +++G + +    + + +++ E +  +  +  E NIR+  
Sbjct: 370 -INSAGWYLLELINKILDLAAIESGKLIVAQEPMCIGEVMAESRTMVEPQAQEQNIRLIF 428

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSS 729
                +  FV ADR R+ Q+   +LSNA+ ++ +G  V +  +    G    SV++ G+ 
Sbjct: 429 PPSSDMNFFVRADRTRVKQVLINLLSNAIKYNREGGMVEVSCSMTKPGRLRISVRDTGTG 488

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +P +    +F +F       G   G G+GL + +  + L GG + + S+
Sbjct: 489 LPPEKLTQLFQQFNRLGQEAGSVEGTGIGLVVTKQLVELMGGSIGVEST 537


>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1559

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 12/220 (5%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K++F+ ++S+E+R+P+  ++G T L+  +    LNS+Q  ++E I  S   LL+L+
Sbjct: 892  ASKTKSAFLANMSHEIRTPMNAVLGMTGLMLET---PLNSEQQDFIETIRISGDALLSLI 948

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVAD 683
            N+ILDL+ ++AG M L      L+  L EV + +A   H   + I  +I          D
Sbjct: 949  NEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSAHNKGLEIAALIYPNVPTQLQGD 1008

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIP-EDMCKSV 738
              RL QI   ++SNA+ F+S G  V+    R          F++ + G  I  ED C+ +
Sbjct: 1009 AGRLRQILMNLISNAIKFTSNGEVVVRAELRSLSSTTATIYFAITDTGLGITFEDQCR-L 1067

Query: 739  FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F  F        R+  G GLGL+I +  ++L GG + + S
Sbjct: 1068 FTPFTQVDASNTRKYGGTGLGLAICKQLVSLMGGEIGVES 1107


>gi|197122791|ref|YP_002134742.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter sp. K]
 gi|196172640|gb|ACG73613.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter sp. K]
          Length = 417

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 8/234 (3%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +V  ER   E+   L + D +K++F+ ++++EL +PLT + G+  +L++ KLG L  +Q 
Sbjct: 146 AVAGERRAAER---LIEVDRLKSAFMHNLAHELSTPLTPLAGYLRILQSDKLGPLQPQQR 202

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + VE +  S   L  +V+++ D A++ AG   +    +V + L ++V       + +  +
Sbjct: 203 RIVEAMLGSVARLSRIVDNLSDFASLQAGRAPIVEQPVVPDQLADDVVAEHRPAIRDARL 262

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V   G  G+ +AD ++L Q  S I+SNA+ FS  G  V+++  R+ G   F+V + G
Sbjct: 263 HVAVSHAGG-GAVLADARKLRQALSNIVSNAVKFSPHGGEVLVEVGREPGRLRFTVYDQG 321

Query: 728 SSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I     + VF              +  G GLGL +       HGG V + S 
Sbjct: 322 PGIGAAELEQVFEPLHHAAARAGEEARLPGSGLGLPVARRIAEAHGGRVWVESP 375


>gi|221211939|ref|ZP_03584917.1| histidine kinase [Burkholderia multivorans CGD1]
 gi|221168024|gb|EEE00493.1| histidine kinase [Burkholderia multivorans CGD1]
          Length = 759

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 137/280 (48%), Gaps = 24/280 (8%)

Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
           P P A     +++ V VT+ V A   L   N         LR A+  K+ F+  + +ELR
Sbjct: 312 PQPQADGIGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELR 371

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++ S+ G     +   +  I      ++ L++D+LD++ +  G ++L 
Sbjct: 372 NPLTPISLALELVR-SREGHATPNE---IAIIQRQLDHMVRLIDDLLDVSRITRGKIELK 427

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L D+++   +  +  + +   R+ V  D  +     D  RL Q+ + +L+NA  +
Sbjct: 428 KEAVRLGDIVDRAVEVASPLLEQRRHRLHVDIDADVRCH-GDPVRLSQVVANLLTNAAKY 486

Query: 702 SSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           ++ G  + L  AR +GD  +  V+++G+ IP D   S+F  F        R   G+G+GL
Sbjct: 487 TAPGGDIGLHVARGDGDTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGL 546

Query: 759 SIVESFINLHGGHVSISSSDEG------VTTINCRIPSKE 792
           ++V+SF+ LHGG V   S+  G      VT    R P+ E
Sbjct: 547 ALVKSFVMLHGGTVRADSAGPGLGSTFTVTLPEYRPPAVE 586


>gi|160871912|ref|ZP_02062044.1| sensory box sensor histidine kinase/response regulator
           [Rickettsiella grylli]
 gi|159120711|gb|EDP46049.1| sensory box sensor histidine kinase/response regulator
           [Rickettsiella grylli]
          Length = 657

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 139/258 (53%), Gaps = 10/258 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +V++T+  +AE+A+ +  EA   A++ K  F++++ +++R+PL+ IIG  +LL+ SK   
Sbjct: 114 YVDITEKKKAEKAIIQAKEAAEVANQAKTEFLENMRHDIRTPLSGIIGCAELLQ-SKTND 172

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L    S+Y   +  SS  LL+  N++L+   V  G +        L   L E+     + 
Sbjct: 173 LTI--SEYANDLVKSSHALLDFHNNVLEGIQVATGEIPFVKKKFDLRQPLEEIINLNKSL 230

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD 718
             E  + ++   D ++  +V  D  R+ +I  ++LSNA+ F+ KG   +  A   +++ +
Sbjct: 231 AAEKQLILQFHYDERIPQYVMGDPVRVQRILLELLSNALTFTKKGQVTVNIALKKKESRE 290

Query: 719 FI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            I   SV + G  IP+D  + +F RF  ++ +++G  +G+GLGL+ V+ F++   G + +
Sbjct: 291 VIVELSVSDTGMGIPKDKQEEIFIRFKRLTPSYKGIYKGLGLGLTTVKQFVDDLDGEIYV 350

Query: 775 SSSDEGVTTINCRIPSKE 792
            S  +   T  C IP +E
Sbjct: 351 ESELDHGATFTCFIPFQE 368


>gi|189345724|ref|YP_001942253.1| histidine kinase [Chlorobium limicola DSM 245]
 gi|189339871|gb|ACD89274.1| histidine kinase [Chlorobium limicola DSM 245]
          Length = 231

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 1/223 (0%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +KN F+  VS+ELR+PL +I+GFT  L   +       + +++  I   S  L  L+ D+
Sbjct: 1   MKNDFISTVSHELRTPLFSILGFTGTLLREQDELERETRMEFISIIHDESKRLSALIEDV 60

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L ++ +D+G +    S +  +  ++EV +S+  +  E NI +++     +    AD+  L
Sbjct: 61  LMISKIDSGRVSYKKSELDPSITVSEVCRSLKIRADEKNIDLRLRVCAPMEHIFADQDSL 120

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   I+ NA+ F+  G  V +    +     FSV++NG  IP +  + +F +F     
Sbjct: 121 KQVAINIIGNALKFTPPGGVVQVSLFCEAQTMCFSVEDNGPGIPAEEAEKIFEKFFRVER 180

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G+   G GLGLSIV+  +  H G V + S     T    R+P
Sbjct: 181 PGEAVDGTGLGLSIVKEIVAAHDGTVEVKSVPNQSTVFMVRLP 223


>gi|323490449|ref|ZP_08095656.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
 gi|323395853|gb|EGA88692.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
          Length = 465

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 5/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+K ++I+  FV +VS+ELR+P+T+I GF++ L         +  S ++E +   S  L 
Sbjct: 236 LKKLEQIRKDFVANVSHELRTPVTSIKGFSETLLDGAYKDTETLLS-FLEIMHTESNRLE 294

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ND+LDL+ V+    ++N     +  ++   ++ I  K+ E +I++K+  + +  + +
Sbjct: 295 MLINDLLDLSKVEQSGFRVNAQPTNMEAVIKRAREMIQPKIDEKSIQLKL--EIQPVTVL 352

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL+Q+   +L NA+ +SS  + + ++  R +   I  V++ G  I       +F R
Sbjct: 353 GDANRLIQVMMNLLINAVTYSSNYTEITIRLFRKDNRAIIQVEDQGIGIESSEIGRLFER 412

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGLSIV+  I  H GHV + S+    TT    +P
Sbjct: 413 FYRVDRARSRNSGGTGLGLSIVKHLIEAHHGHVEVDSTVGVGTTFTIYLP 462


>gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 23/268 (8%)

Query: 543 VNVTDSVRAERALT--------EKNEALRK----------ADEIKNSFVQHVSYELRSPL 584
           ++VT+ ++AE+AL         E+ +AL +          A  +K+ F+  VS+ELRSPL
Sbjct: 209 LDVTERIQAEKALRQSELMVIEERAQALERERAARIELERASRMKDEFLAIVSHELRSPL 268

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G++ LL+T KL     K  Q +E I  ++     L+ D+LD++ +  G ++L    
Sbjct: 269 NGILGWSRLLRTRKLSP--EKIEQALESIERNAQAQTQLIEDLLDISRIIRGNIRLLVRP 326

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L  ++     ++    +  +I+I    +  +G   AD +RL Q+   +LSNA+ F+ +
Sbjct: 327 TKLIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERLQQVIWNLLSNAVKFTPE 386

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           G  V +   +   +    V + G  I  +    VF+RF        R   G+GLGL+IV 
Sbjct: 387 GGRVEICLEQVETNVQIRVTDTGKGISPEFLPYVFDRFRQADATTTRNQGGLGLGLAIVR 446

Query: 763 SFINLHGGHVSISSSDEGV-TTINCRIP 789
           + + LH G VS++S  EG   T   ++P
Sbjct: 447 NLVELHNGTVSVASPGEGQGATFTVQLP 474


>gi|310824792|ref|YP_003957150.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397864|gb|ADO75323.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 834

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 8/241 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQY 609
           A+RA  E  EA R    +K+ F+  +S+ELR+PLT+I+G+T  LL+   L     ++   
Sbjct: 453 AQRAQQEAQEANR----LKDEFLATLSHELRTPLTSILGWTQMLLRRDDLDEAGRRRG-- 506

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  ++ +   LV D+LD++ + AG + L+   + L ++++   +S+        + +
Sbjct: 507 LETIERNARVQRQLVEDLLDVSRIAAGKLTLDLREVKLREVVDAALESVRPTAEARGVVL 566

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +        S +AD  RL Q+   +L+NA+ F+ +G  V L+A R+      +V + G  
Sbjct: 567 QAAPGEVSESVLADSTRLQQVLWNLLTNALKFTERGGCVRLEARREEAFVALTVSDTGKG 626

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
           I       VF RF          G+GLGL+IV + + LHGG V + S   G   T   R+
Sbjct: 627 IEAGFLPHVFERFRQGNTGRGHGGLGLGLAIVRTMVELHGGTVDVHSDGPGTGATFTVRL 686

Query: 789 P 789
           P
Sbjct: 687 P 687


>gi|254410199|ref|ZP_05023979.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183235|gb|EDX78219.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1855

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 126/290 (43%), Gaps = 55/290 (18%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L   N  L  A  +K+ F+ ++S+ELR+PL  I+G ++ L+    G +  KQ + +  I 
Sbjct: 1411 LATTNAELAHATRLKDEFLANMSHELRTPLNAILGLSESLQEEVYGEITEKQRKSLATIE 1470

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S   LL L+NDILDLA +++G ++LN + + ++ L +     I     E NI +     
Sbjct: 1471 KSGRHLLELINDILDLAKIESGKLELNLTAVRISQLCDASLSLIKPLALEKNITLSGNIA 1530

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD--------------- 718
              LG+ + D +RL Q+   +LSNA+ F+ +G  V ++  + D GD               
Sbjct: 1531 AGLGTILGDERRLQQVLINLLSNAVKFTPEGGQVTVEIRKQDGGDERDKEVNATFSQGGF 1590

Query: 719  -------------------------------------FIFSVKNNGSSIPEDMCKSVFNR 741
                                                    SV + G  I ++  + +F  
Sbjct: 1591 CSNVTISSQKKIPKPAPTNHTLEGEEELTFNTSPNEMLYISVSDTGIGIAKEHREKLFQS 1650

Query: 742  FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV       RR  G GLGL++V   + LHGG V++ S     +    R+P
Sbjct: 1651 FVQIDSSLSRRHQGTGLGLALVRRIVELHGGWVTVESEIGKGSCFTVRLP 1700


>gi|170690112|ref|ZP_02881279.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170144547|gb|EDT12708.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 751

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 17/253 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEA--------LRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +L+ V VT  VRA   L EK+ A        LRKA+  K+ F+  + +ELR+PL  I+  
Sbjct: 337 ILSAVEVTGYVRARETL-EKSRADRELLLAELRKANGAKDEFLAMLGHELRNPLAPIVSA 395

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L++  + G+ ++ + + V  I      L+ LV+D+LD++ +  G ++L+   + ++++
Sbjct: 396 LELME--RRGTDSAARERAV--IQRHVDHLVRLVDDLLDVSRIIRGNVELDKRRVDVHEV 451

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + +  +  +  + +   R+K+  D  L   VAD  RL Q+ + +L NA  ++  G  + +
Sbjct: 452 ITKAVEMTSVLVQQRAHRLKIEVDEAL-ECVADPMRLAQVIANLLINAAKYTQAGGEITV 510

Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            A   + D I   V +NG  I  D+   VF+ F        R   G+G+GL++V++F+ L
Sbjct: 511 SAMAADADHIRIRVCDNGMGIAPDVLPHVFDTFYQGTQTIDRAEGGLGIGLALVKNFVKL 570

Query: 768 HGGHVSISSSDEG 780
           HGGHV  +S   G
Sbjct: 571 HGGHVEAASGGPG 583


>gi|187930424|ref|YP_001900911.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187727314|gb|ACD28479.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 1436

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 14/251 (5%)

Query: 549  VRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            V AER   +  EA + A E     K+ F+  +S+E+R+P+  ++G  +LL+ +KL     
Sbjct: 809  VTAEREQADALEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL---EG 865

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +Q Q V  +  S   LL++++DILD A ++AG + ++ +   L ++ +     +A++ HE
Sbjct: 866  EQKQMVSLVQDSGRALLHILDDILDYAKIEAGRLDISPAATDLREVFDGTVGLLASRAHE 925

Query: 665  NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR---DNGDF 719
             ++ + V     + + V+ D  RL QI   +LSNA+ F+  GS  +  + AR   D    
Sbjct: 926  KSLAVHVTVAADVPASVSVDSIRLRQILFNLLSNAIKFTDTGSVRLSAECARVTDDTAHL 985

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            I SV + G  I   +  ++F  FV       RR  G GLGL+I      L GG + + S+
Sbjct: 986  IISVTDTGIGISPAVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGKLVMESA 1045

Query: 778  DEGVTTINCRI 788
                T +   +
Sbjct: 1046 QGQGTAVTLEL 1056


>gi|134045508|ref|YP_001096994.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132663133|gb|ABO34779.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 614

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 139/259 (53%), Gaps = 12/259 (4%)

Query: 541 TFVNVTDSV-RAERALTE-----KN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +F  + D + RA++ L +     KN  + L++ D +K+  +  VS+ELR+PLT+I G+ D
Sbjct: 355 SFNKMADEISRADKKLKKDADELKNSYDELKEVDNLKSELLSIVSHELRTPLTSIRGYVD 414

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LLK    G LN KQ +++  IS +S  L  L++++LDL  V+  ++   ++ + + + + 
Sbjct: 415 LLKDETAGKLNDKQHEFILIISENSDRLKRLIDNMLDLVKVENEVLDFKFNKLNIKNTVG 474

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E+  S+  K   ++  I ++ D        D+ ++ Q+ + ++ NA+ FS   + V +  
Sbjct: 475 EIISSL--KYFADSKNIILLEDVDEVYIKGDKSKINQVLANLIENAIKFSKNQTKVTVIG 532

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
             D  +    + + G  IP++  + +F +F  + ++ + +  G GLGL++ +  +  HGG
Sbjct: 533 FEDKENLHLEITDQGPGIPKENLEKIFEKFYQIDSSSKREIGGSGLGLAVCKKIVESHGG 592

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S     T+++  +P
Sbjct: 593 SIWVESKVGKGTSVHILLP 611


>gi|89054779|ref|YP_510230.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88864328|gb|ABD55205.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 346

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 10/237 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +E++  FV +VS+ELR+PLT+++GF + L+        + Q +++  + A +  + 
Sbjct: 109 LRETEEMRRDFVANVSHELRTPLTSVMGFIETLRGPARND-PAAQDRFLGIMEAEAGRMN 167

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+L L+ V+A   K     + L  LL EV  ++  +  +   R+++I D       
Sbjct: 168 RLISDLLSLSKVEAAERKRPTEQVDLAVLLEEVIAALRPRADDAGNRLELIHDDAPALVR 227

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNNGSSIPEDM 734
            D  +L+Q+F  +  NA+ +   G  V L+ +R  G  I         V + G  I    
Sbjct: 228 GDHDQLMQVFLNLAENALKYGGPGQPVTLRLSRGQGGGINGRAMIRVDVTDQGPGIDSQH 287

Query: 735 CKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  RF   +AHR +   G GLGL+IV+  +N H G + I+S     +T + ++P
Sbjct: 288 LPRLTERFYRVDAHRSREMGGTGLGLAIVKHIVNRHRGRLKITSQQGHGSTFSVQLP 344


>gi|298377088|ref|ZP_06987042.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266072|gb|EFI07731.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 769

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 132/243 (54%), Gaps = 12/243 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ L +K E + +++ +K++F+ ++S+E+R+PL  I+GF++LL  +     + +  ++
Sbjct: 532 KMEQELRDK-EKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAET---CHSEETREF 587

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  ++ +LL LVNDILDL+ ++AG M   YS   ++ L   + Q+  +++ +     
Sbjct: 588 CEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLY 647

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             I +     + +++ RL Q+ +  L+NA  F+ +GS  +    R++G + F VK+ G  
Sbjct: 648 CEIPEQDCVIY-SEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKG 705

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TIN 785
           I       VF RF       Q  G GLGLSI ++ + NLHG     S   +G T   TI 
Sbjct: 706 IERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763

Query: 786 CRI 788
           C +
Sbjct: 764 CAV 766


>gi|302382808|ref|YP_003818631.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193436|gb|ADL01008.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 761

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 163/368 (44%), Gaps = 26/368 (7%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC--SRYYNESD 495
           E ID + +G+  +  D R+ + N  +  +       L  G   R++         Y E+ 
Sbjct: 251 EAIDTMPDGLGFYDADDRLVIWNARYAEVNTELAAALEVGAKFRDMLQIGLEQGLYAEAV 310

Query: 496 G----WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFVN-VTDSV 549
           G    W      I      R+ L  TLE          +     AQ  ++T VN +TD  
Sbjct: 311 GREQEW------IEERLAARRRLSNTLEQQISGDRWLRVQDRRTAQGGIVTVVNDITDLK 364

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +AL E  +    A+  K+ F+ ++S+E+R+PL  +IG T  L  ++   L+  Q + 
Sbjct: 365 RDAQALAEARDTAETANRAKSEFLANMSHEIRTPLNGVIGLTQALARTE---LDHDQREI 421

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I +S   L  L++DILDLA V++G +++      L   +NE          E  ++ 
Sbjct: 422 LNLIQSSGVTLQTLLSDILDLARVESGRLEIADEPFDLARAINEAAHLYGAPAAEKGLQF 481

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFI-FSV 723
            V I     G    D  RL Q+ + ++SNA+ F++KG  V L AA    RD    + F+V
Sbjct: 482 FVDIDPAAEGWVRGDVVRLKQVLTNLVSNAVKFTAKG-FVSLNAAVGRDRDGAAILRFTV 540

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G     +    +F RF        RR  G GLGL+I     ++ GGH+   S   G 
Sbjct: 541 EDTGVGFDAEAKARLFTRFEQADGTITRRFGGTGLGLAICRQLADMMGGHLDCESEAGGG 600

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 601 STFILTLP 608


>gi|262195164|ref|YP_003266373.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078511|gb|ACY14480.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 650

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 160/365 (43%), Gaps = 36/365 (9%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           ET+ HL   V+ F   G +   NPA  S +  E+     G H R +     R +  +   
Sbjct: 132 ETLRHLPLAVSRFDAGGALVFQNPAAASAFGPED-----GPHARLLERFADREHGAAALR 186

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERAL 555
           +  A  I       ++  G  E   D  L     P+   + +L F+  ++++  +AE  L
Sbjct: 187 EARAGAIVRTQTRLRT--GAGERWHDVELRQGRDPV-TGKPLLLFMAGDISELKQAEAEL 243

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E    A  +K+ F+  +S+E+R+PL  IIGF DLL  S    L+ +Q  +++ +  
Sbjct: 244 RAAKEQAEAAARVKSEFLATISHEMRTPLHGIIGFGDLLAHSH---LDPQQRGFLDSLRE 300

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+ +L  L++D+LDLA ++AG M      + L  L+  V+  IA +  E  + ++   D 
Sbjct: 301 SARLLFRLISDVLDLAQIEAGRMHFEDRAMDLEALIARVRDVIAFQAAEKRLVLEAQLDP 360

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-----------------KAARDNG 717
           +L   +  D  R+ Q+   +L NA+ F+  G   +                   A R  G
Sbjct: 361 ELPRHLRGDALRIEQVLVNLLGNALKFTPAGRVSLRVRCVPECAGEDALECASAAGRCLG 420

Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D     F V++ G  I  D    +F  F        R   G GLGL+I +  +   GG +
Sbjct: 421 DVHRLRFEVRDTGVGISSDRLNILFEPFTQLDTSASRAIGGSGLGLAICKRLVEGMGGVI 480

Query: 773 SISSS 777
            ++S+
Sbjct: 481 GVAST 485


>gi|126656209|ref|ZP_01727593.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
 gi|126622489|gb|EAZ93195.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
          Length = 1565

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 15/226 (6%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            R+ D +K  F+  VS+ELR+PLT++ G   LL +  L          ++ +  +   L+ 
Sbjct: 1317 RELDRLKTEFISVVSHELRTPLTSMRGALGLLDSGVLREEPETVEHMLQIVLRNCDRLIR 1376

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
            LVNDIL+L  +++G ++L      ++ LL +  ++++    E +I I++ S   + + V 
Sbjct: 1377 LVNDILNLERLESGKVQLIKEACEVDHLLTDAVETVSAMAMEASINIELTS---ISAHVW 1433

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------RDNGDFIFSVKNNGSSIPE 732
            A    ++QI + +LSNA+ F+ +G+TV L A          R     +FSVK+ G  IP 
Sbjct: 1434 ASYDAIIQILTNLLSNAIKFAPEGTTVWLTAQLFDDPDSTDRATSFVLFSVKDQGRGIPT 1493

Query: 733  DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +   ++F RF  V  +   Q+ G GLGL+I +S I  H G + + S
Sbjct: 1494 NKLTTIFGRFQQVDASDARQKAGTGLGLAICQSIIQQHNGRIWVDS 1539


>gi|186471316|ref|YP_001862634.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
 gi|184197625|gb|ACC75588.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
          Length = 720

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 11/232 (4%)

Query: 552 ERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER    + EA R    A+  K  F+ ++S+ELR+PL  I+G+  +L      SL+ +Q  
Sbjct: 245 EREAAVEREARRMAEAANRAKGEFLANLSHELRTPLNGILGYAQILGRDD--SLSLRQRD 302

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  S   LL L+++ LD A V+AG +++    + L  L++ +++ I  K  +  + 
Sbjct: 303 GVAVIQQSGEHLLTLIDETLDFAKVEAGKLRIEICDVPLAGLVDTIREIIGVKAEQRRLA 362

Query: 669 IK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
               V +D   G   AD  RL Q+   +LSNA+ F+ +G   +     ++G   F V + 
Sbjct: 363 FACSVAADAPCG-VRADEHRLRQVLLNLLSNAVKFTDRGEVRLFIRRGESGAVRFEVHDT 421

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I  +  +++F  F   A   +RR  G GLGL+I   F+   GG V++ S
Sbjct: 422 GIGICAEYHETIFMPF-EQAGGAERRAGGTGLGLAISRQFVRAMGGEVNVDS 472


>gi|302037583|ref|YP_003797905.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605647|emb|CBK41980.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 490

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 8/230 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ D+IK+ F+ HVS+ELR+P+ +I   T LL     G L   Q   +  +S SS  L+
Sbjct: 251 LQQLDDIKSEFLAHVSHELRTPMASIQEGTHLLLDEIPGPLTQDQRTTLRIMSDSSRRLM 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++ ILDL+ +++G+M+  ++   L  + +     I        +R+ V +  +     
Sbjct: 311 YLISTILDLSKMESGMMEYRFAPTDLRRVADISVNKIRLLADAKQVRLLVEAPVERHWVR 370

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           AD  R+ Q+   +LSNA+ +S +G+ V L  +  RD G     V + G  IP +    +F
Sbjct: 371 ADSARIEQVLDNLLSNALKYSPEGAAVTLHMEPRRDEGLMFVDVTDCGPGIPTEEVPHIF 430

Query: 740 NRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            RF     R + R    G GLGL++ +  +  HGG + + S     TT+ 
Sbjct: 431 ERFYQG--RTKTRHVSVGSGLGLALAKKVVEAHGGRIWVDSEVGKGTTVR 478


>gi|296448571|ref|ZP_06890444.1| histidine kinase [Methylosinus trichosporium OB3b]
 gi|296253911|gb|EFH01065.1| histidine kinase [Methylosinus trichosporium OB3b]
          Length = 589

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 6/209 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  VS+E+R+PL  ++G   LL  ++   L+++Q+ YV+ I AS   L  L++DIL
Sbjct: 76  KSRFLATVSHEIRTPLNGVLGLAQLLAATR---LDAEQASYVDAIGASGRSLAQLIDDIL 132

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687
           D + ++AG ++L   +  L  L+  V + +A +    N+ I   I+         D  R+
Sbjct: 133 DFSKIEAGKVELRIESFALAPLVEGVVELLAPRAEAKNLEIAGFIAANAPERIEGDAARV 192

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +  NA++F+S+G   +       G  +F V + G  +P    + +F  F     
Sbjct: 193 RQVLVNLAGNAVNFTSEGGVGLRVEIDAEGALVFRVVDTGPGVPPGAREIIFEEFEQGDG 252

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSI 774
              RR  G GLGL+I      L GG + I
Sbjct: 253 SSTRRHGGTGLGLAISRHLAKLMGGRLEI 281


>gi|188993224|ref|YP_001905234.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734984|emb|CAP53196.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 702

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 12/243 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYIS 614
           + +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL +  + G  N K    +  I+
Sbjct: 311 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKG---LSVIA 366

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVI 672
           +S+     L++D+LDL+++  G ++L   ++ L + + E    Q    +  +  +++ V 
Sbjct: 367 SSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEPVAEGKDQVLQLHVP 426

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L   + D  RL Q+F  +LSNA+ F+     + +    D+G FI SV+++G  I  
Sbjct: 427 PTPCL--VLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEHDDGHFIVSVRDSGDGIAS 484

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T   R+P
Sbjct: 485 EFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 544

Query: 790 SKE 792
             +
Sbjct: 545 EHQ 547


>gi|70731797|ref|YP_261539.1| sensor protein GacS [Pseudomonas fluorescens Pf-5]
 gi|10178628|gb|AAG13658.1|AF246292_1 sensor kinase GacS [Pseudomonas fluorescens]
 gi|68346096|gb|AAY93702.1| sensor protein GacS [Pseudomonas fluorescens Pf-5]
          Length = 917

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|291566667|dbj|BAI88939.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1062

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 7/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +  E    A+  K+ F+ ++S+ELR+PL  I+GF  L+ T++  +L  +  Q++E 
Sbjct: 570 RQLQQAKEIADAANRSKSEFLANMSHELRTPLNAILGFAQLMSTNQ--NLAPENRQHIEI 627

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671
           I+ S   LL L+NDIL+++ ++AG   L  +   L + L  ++     +    N+  I  
Sbjct: 628 INRSGEHLLGLINDILEMSRIEAGRATLQVNGFDLYEFLQGLEDLFKLRATSKNLHLIFE 687

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI-FSVKNNGS 728
              G +    AD ++L Q+   +L NA+ F+ +GS  +  +   RD  D + F V++ G 
Sbjct: 688 RPKGLIRHIKADEKKLRQVLINLLGNAIKFTDEGSVTVRVSHQNRDASDLLQFEVEDTGL 747

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I  + C+ +F  F  +        G GLGL+I + F+ L G  +++ S     +T +  
Sbjct: 748 GIAPEDCEGLFEAFAQTETGLNASEGSGLGLAIAQQFVKLMGDEITVRSCLNRGSTFSFT 807

Query: 788 IP 789
           IP
Sbjct: 808 IP 809


>gi|260223388|emb|CBA33904.1| hypothetical protein Csp_B21370 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 393

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 13/234 (5%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K+ F+   ++ELR+PL +I GF +L+    LG    KQ + +  I   +  L++L+N
Sbjct: 151 DRMKSDFLSAAAHELRTPLASIYGFAELMLVRTLGP--EKQKELLGTIHRQAKSLIDLIN 208

Query: 626 DILDLATVDAGIMK-LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--A 682
           ++LDL+ ++A   K LN  +  L  L++    S    +H    +  ++ D + G+F+  A
Sbjct: 209 ELLDLSRIEARQGKDLNIVSCPLAALVD----STVGGLHYKAEKHLLVCDLRHGAFMVMA 264

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           D ++  Q    +LSNA+ +S +G TV     L+           V++ G  + E  C   
Sbjct: 265 DPEKTRQALLNVLSNAVKYSPQGGTVTISTALRGVGGQQQVGVQVRDEGMGMDEAQCSRA 324

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F RF      G   G GLGLS+V+  + L  G   +SS+    TT+   +PS+E
Sbjct: 325 FERFYRAHPLGDIPGTGLGLSLVQEIMQLQQGEAELSSAPGAGTTVTLWLPSQE 378


>gi|116249380|ref|YP_765221.1| two-component histidine kinase/response regulator motif-containing
            protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254030|emb|CAK12427.1| putative repetitive protein with two-component sensor and regulator
            motifs [Rhizobium leguminosarum bv. viciae 3841]
          Length = 2099

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 16/244 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ KQ ++
Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEF 1465

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I  + T LLNL++DILDL+ +++G + ++   I +++LL  + +    +    N+  
Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEISVSNLLEVMARPFRHEAENRNLSF 1525

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717
             V +      S + D +RL QI   +LSNA  F+++G   +  A+  +G           
Sbjct: 1526 AVEVGADITKSIITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASATSGWSSDHPSLKHA 1585

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F V + G  IP +  + +F  F        R+  G GLGL+I     NL GG + 
Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645

Query: 774  ISSS 777
            + S+
Sbjct: 1646 LRST 1649


>gi|2460283|gb|AAB71889.1| hybrid histidine kinase DHKB [Dictyostelium discoideum]
          Length = 1969

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 192/410 (46%), Gaps = 61/410 (14%)

Query: 413  IWMFENLTVQVDL------ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            I MF  +   VDL      E++  +L ++  E +        V   DG I  +NPAF S+
Sbjct: 808  ILMFYTILSSVDLKEIERKESRIQSLFRISNEAL--------VVHKDGLITDANPAFESM 859

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-----QGTLEL- 520
            ++ +   L               Y  +S  W+   A+   F+     L      G +E  
Sbjct: 860  FQIKLQDL--------------LYPIQSGIWEFLPALEGMFEPGASKLFDNPDMGVIETT 905

Query: 521  -LSDSVLEYSIIPLPNAQTM----LTFVNVTDSVRAERALTEKNEALRKAD---EIKNSF 572
             +  S   + +    N  T     +  +++ D +   + L E + ALRKA+   E K  F
Sbjct: 906  GIDSSGRTFQVEVRTNKATYDGEPVDVISIID-ITGRKQLMEADYALRKAEAANEAKVIF 964

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            +  VS+ELR+P+  ++   D+L+ +   +L+S Q +++  I  S   LL+L+NDILD + 
Sbjct: 965  LTTVSHELRTPINGVLASADILERT---TLDSTQKEFLNCIKLSGNYLLDLINDILDYSK 1021

Query: 633  VDAGIMK-LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            ++AG M+ + Y   +L  L N ++  ++  ++E  + + +  D  +   V  D++R+ QI
Sbjct: 1022 IEAGKMEIIKYDFSILKMLDNSIR-IVSKNIYEKGLDLFIFIDPNVPVIVNGDQRRIKQI 1080

Query: 691  FSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VS 744
                LSN++ F++ G  +I +K   D+       F V+++G  I  +    +F  F  + 
Sbjct: 1081 LLNFLSNSIKFTNHGQIIIRVKLVTDDSTHSLIKFDVEDSGIGIKTEHLNPLFASFSQID 1140

Query: 745  NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-----TINCRIP 789
            + +  + RG GLGLSI +    + GG V +  S+ GV      TI C IP
Sbjct: 1141 SGNSRKYRGTGLGLSISKRLCKMMGGDVKV-KSEFGVGSTFSFTIPCGIP 1189


>gi|256425249|ref|YP_003125902.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256040157|gb|ACU63701.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 673

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 173/358 (48%), Gaps = 23/358 (6%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNES-DGWDLFAAI 503
           GV V   + R+   N  F      E+N      HI  ++ T   RY++   +  + F   
Sbjct: 40  GVLVTDGNHRVIWVNSVF------EQNAGQEAMHIFGMSYTAIIRYFSRMVEHVEDFEQK 93

Query: 504 ITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEA 561
           +     ++K   G   +L D  + E S  PL   +  +  V  + D  R +   ++ + A
Sbjct: 94  MRDLRLKKKPYFGWEIILRDGRIYEVSYNPLIEKRRFMGSVWQIVDVSRHKMPRSQLDLA 153

Query: 562 LRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            R+A+E + +   F+  +S+E+R+PL  I+G T LL+ +   +L+ KQ  Y+  +  SS 
Sbjct: 154 RRQAEEARGAQKEFLASMSHEIRTPLNVIVGMTHLLEET---NLDPKQRDYINILKHSSG 210

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           IL+ L++DILDL+ ++AG +++N     L +L+  ++ +   K+ +  + I    D +L 
Sbjct: 211 ILMGLISDILDLSKIEAGELQVNQREFNLTELVQSLRHTFELKIGQRPVSISASIDPQLK 270

Query: 679 SF-VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPED 733
           ++ V D   L QI   +L NA  F+ +G   I   L + +++  ++ F V + G  I +D
Sbjct: 271 TWLVGDDMLLNQILMNLLGNAEKFTREGEIAINVQLDSWQEDKCWVTFQVCDTGIGIQKD 330

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F  +       R    G GLGL+I +  + L GG + +  +D   T  +  +P
Sbjct: 331 KLELIFQNYKQAEQEIRENYGGTGLGLAISKQLVELQGGSIVVEEADGFSTCFSFTLP 388


>gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1566

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 134/274 (48%), Gaps = 17/274 (6%)

Query: 531  IPLPNAQ-TMLTFVNVTDSVRAERALTEKNEAL-----------RKADEIKNSFVQHVSY 578
            IPL N Q  ++ +   + ++ A++ L  + E+L            +A+ IK+ F+  +S+
Sbjct: 1144 IPLKNEQGKIVKWFGTSTNIDAQKQLEAQRESLLSLERAAREQAEEANRIKDEFLAVLSH 1203

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            ELRSPL  I+G+  LL+T    +   ++   +  I  ++ +   L+ D+LD++ +  G +
Sbjct: 1204 ELRSPLNPILGWAKLLQTQNFNAETYQKG--LSTIERNAALQAQLIEDLLDISRIMRGKL 1261

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
             L    + L  ++    +++        I I+   D  +G  + D  RL QI   +LSNA
Sbjct: 1262 NLKIVPVNLIFIIESALETVRLAAEAKTINIQKDLDLTVGKVLGDTARLQQIVWNLLSNA 1321

Query: 699  MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            + F+  G  V +K      + + +V + G  I  +    VF+ F     +  R+  G+GL
Sbjct: 1322 VKFTPTGGQVNVKLEGSGNEAVITVSDTGQGISANFLPYVFDYFRQADSKTTRKFGGLGL 1381

Query: 757  GLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            GL+IV   + LHGG V+ +S  E    T + ++P
Sbjct: 1382 GLAIVRHLVELHGGTVTANSPGENQGATFSVKLP 1415


>gi|13472176|ref|NP_103743.1| sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14022921|dbj|BAB49529.1| probable sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1622

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 13/252 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A RAL EK E L    + K+ F+ ++S+ELR+PL +++  ++LL  ++ G+LN KQ ++ 
Sbjct: 927  ARRALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSNLLAANQQGNLNEKQVEFA 986

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I+++ T LL+L+NDILDL+ +++G + ++ + + +  L   + ++      +  +   
Sbjct: 987  RTINSAGTDLLSLINDILDLSKIESGTVSIDINDMPVAHLRQHMDRTFRQLAADKGLGFT 1046

Query: 671  VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNG------DF 719
            +  D +L   V  D +RL QI   +LSNA  F+S G       + K  R NG        
Sbjct: 1047 INVDPELPETVRTDEKRLQQIVLNLLSNAFKFTSAGEVRLDFRVEKTGRRNGARQPKRAL 1106

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              +V + G  IPED  K +F  F        R+  G GLGLSI      L GG + + S+
Sbjct: 1107 AIAVTDTGIGIPEDKQKLIFEAFQQADGTTSRKYGGTGLGLSISREIARLLGGELRVEST 1166

Query: 778  DEGVTTINCRIP 789
                +T    IP
Sbjct: 1167 PGKGSTFTLMIP 1178


>gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1308

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 129/244 (52%), Gaps = 10/244 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++T   +AE  L +  +    A+  K+ F+ ++S+ELR+PL  I+GFT LL      
Sbjct: 819  TIFDITKRKQAELELQKAQKEAIAANRAKSIFLANMSHELRTPLNAILGFTQLLGRDH-- 876

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             L  +  + ++ I+ S   LL L++DILDL+ ++ G +    +   L  LL  V++ +  
Sbjct: 877  CLRPEHLERLQIINRSGEHLLGLIDDILDLSKIETGKIAAFLTGFDLYHLLVTVEEMLQP 936

Query: 661  KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARD 715
            K     +R+ +     L  ++  D ++L Q+   +L+NA+ F+ +G TVIL    KAA +
Sbjct: 937  KAKTRGLRLIIEKSFDLPQYIKTDEKKLRQVLINLLNNAIKFTQEG-TVILRVKPKAAEN 995

Query: 716  NGD-FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +F V++ G  +  D    +F  FV + A +   +G GLGL+I + F+ L GG + 
Sbjct: 996  TPQRLVFEVEDTGVGMAPDDIDQLFKVFVQAEAGKKLNQGTGLGLAISQKFVQLMGGEIE 1055

Query: 774  ISSS 777
            + S+
Sbjct: 1056 VKST 1059


>gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces
            ambofaciens ATCC 23877]
          Length = 1331

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 14/255 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 751  QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 810

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ +      +  ++ 
Sbjct: 811  AGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEATFRPMTTQKGLQF 870

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---------GD 718
             V  + G     + D  RL Q+   +LSNA+ F+ +G   + ++ A D+         G 
Sbjct: 871  TVSTAAGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELAVEPAHDDEVPPGVVRGGA 930

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + F VK+ G  IPE   +S+F  F        R+  G GLGLSI      L GG V++ 
Sbjct: 931  VVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSITREMAQLLGGAVTVD 990

Query: 776  SSDEGVTTINCRIPS 790
            S+ +  +T    +P+
Sbjct: 991  STPDRGSTFTLFLPA 1005


>gi|320160495|ref|YP_004173719.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319994348|dbj|BAJ63119.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1095

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 129/242 (53%), Gaps = 22/242 (9%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             ++ D+IK+ FV  VS++LRSPLT + G+T +L+   +G LN +Q  YV+ I +    + 
Sbjct: 857  FKELDQIKSDFVATVSHDLRSPLTLMKGYTTMLQM--VGELNEQQKAYVQKIISGVENMS 914

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--------VIS 673
             LVN++LDL  ++AGI  L    ++++ +++EV  ++  +  +  I ++        VI 
Sbjct: 915  RLVNNLLDLGRIEAGI-GLQIEKVMVSQVVDEVLNALQLQATQKQIELEKEWQSTAPVIV 973

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
            +G       DR  L Q    ++ NA+ ++  G  V ++    +   +  V + G  I P 
Sbjct: 974  EG-------DRALLQQALYNLVENAIKYTPSGGKVSIRLEERSESLVLKVVDTGIGIAPL 1026

Query: 733  DMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            D+ + +F +F  +  R   Q+RG GLGL+IV+S +  H G V + S     +T +  +P 
Sbjct: 1027 DLPR-LFEKFYRSGRRESYQQRGSGLGLAIVKSIVERHHGRVWVESQLGKGSTFSVELPL 1085

Query: 791  KE 792
            ++
Sbjct: 1086 RQ 1087


>gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1120

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  EA  +A  +K+ F+ ++S+E+R+P+  ++G   LL      SL +K  +Y + I 
Sbjct: 400 LVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLGMAQLLLRL---SLEAKPREYAQTIY 456

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL+++NDILD + ++AG M+L      L+  +  + + +     E  + + V+ +
Sbjct: 457 RSAEHLLSVINDILDFSKIEAGEMRLETLDFDLDVCIESMVEMVVATAEEKGLELNVLIE 516

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSI 730
             +      D  RL QI   +++NA+ F+ +G  ++   LK++  +   IFSV+++G  I
Sbjct: 517 SSVPRQLQGDPGRLKQILLNLVNNAIKFTDRGQVLVRVSLKSSTVDRKLIFSVRDSGIGI 576

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +  K +F  F  V  +   Q  G GLGL I +  + + GG + + +S
Sbjct: 577 SPEGQKKLFQSFSQVDGSPTRQYGGTGLGLVICKQLVEMMGGEIGVRTS 625


>gi|300788622|ref|YP_003768913.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299798136|gb|ADJ48511.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1546

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 15/255 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L E+   L  A + K  F+ ++S+ELR+PL + +    LL  +  G+L  KQ Q+
Sbjct: 1118 QARQELEERAGQLTVASQYKTEFMANMSHELRTPLNSALILAKLLSENPEGNLTEKQIQF 1177

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I A+ + L  L+NDILDLA V+AG + +  S I L +L++ V+        +  +  
Sbjct: 1178 AKTIYAAGSDLQQLINDILDLAKVEAGRLDMQMSDITLPELVDYVESLCRPLTADKGLEF 1237

Query: 670  KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG-----------STVILKAARDN- 716
             V  D  + GS   D  RL QI   +LSNA  F+ +G           + V  +A R+  
Sbjct: 1238 AVHIDPPVPGSVHTDEHRLQQILRNLLSNAAKFTDEGGVRLHIRSADPAEVEQEALRNAP 1297

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            G   F+V++ G  IPE+    +F  F        R+  G GLGL+I +    L GG + +
Sbjct: 1298 GIIAFAVEDTGIGIPEEKLAVIFEAFRQADGTTSRKYGGTGLGLNISQQLTELLGGELRV 1357

Query: 775  SSSDEGVTTINCRIP 789
             S     +T    +P
Sbjct: 1358 VSEPGVGSTFTLYLP 1372


>gi|283850560|ref|ZP_06367848.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574131|gb|EFC22103.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 740

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 128/240 (53%), Gaps = 16/240 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAE  L E+     KA+  K+ F+ ++S+E+R+P+  I+G T+L   + L  +  +   Y
Sbjct: 340 RAEE-LGEQKAIAEKANRAKSEFLANMSHEIRTPMNGIMGMTEL---ALLSEIPDQTRSY 395

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++   +S+  LL+++NDILDL+ ++AG + L+     L   L+ V   +A    +N + +
Sbjct: 396 LQMAKSSALHLLSIINDILDLSKIEAGKLVLDCQEFDLLHALHAVCDPLAMTARKNGVAL 455

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GD-----FIF 721
             + D  +  + + D+ R  QI + I+ NA+ F+ KG   +     D+  GD      +F
Sbjct: 456 TCVIDPAVPAALLGDKGRFKQILTNIVGNAVKFTRKGQVEVGVRPADSAGGDAGRSRLLF 515

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            V+++G  IP    +++F  F    S+AH  +  G GLGL I + F+ + GG + + S +
Sbjct: 516 WVRDSGIGIPAGRLEAIFESFAQATSSAHI-EFGGTGLGLPISKKFVEMMGGSIWVESEE 574


>gi|157737045|ref|YP_001489728.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
 gi|157698899|gb|ABV67059.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
          Length = 765

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 25/274 (9%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            FDDE   + G +E+  +           N + ++T         +E  L    E  + A
Sbjct: 277 EFDDEMGDMIGAVEIFKE-----------NTEKLIT---------SEHQLKIAMEDAKNA 316

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+  +S+ELR+PL  I+GF ++LK S   +  +++ + +  I  S   LLN++N
Sbjct: 317 NQAKSIFLARMSHELRTPLNAILGFANILKKSMNAT--NQEKENLNIIKKSGEHLLNIIN 374

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           +IL+L+ ++AG +++N       +L+ E++   A +    N++  +     L  F+ AD 
Sbjct: 375 EILELSKIEAGKIEINPKNFDFCELIKEIEDIFALRCKSKNLKFTINQTNNLPKFIKADE 434

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QRL QI   +L N++ F+++G  + L     N    F VK+ G  I     + +F  F  
Sbjct: 435 QRLRQILINLLGNSLKFTNEGQ-IFLNIYSLNNKLFFEVKDTGIGIDLKNQEKIFKPFEQ 493

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                  ++G GLGL+I +  I L GG + + S 
Sbjct: 494 VKLDNYTQQGTGLGLAITKELIALMGGTIYVKSQ 527


>gi|92117022|ref|YP_576751.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91799916|gb|ABE62291.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14]
          Length = 536

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607
           E+A    +EA  +A+     K+ F+  +S+ELR+PL  I+GF++++K+   G    +   
Sbjct: 244 EQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAVAVYK 303

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ +    +  +     I
Sbjct: 304 SYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRASSRGI 363

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNN 726
            I  + +  +     D +   QI   +LSN++ F+ +G  + LK     +G    SVK++
Sbjct: 364 TIHEVFEHGMPRIWGDERATRQIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVKDS 423

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           GS I ED    V   F   +N+ +   +G GLGL I +S I++HGG  ++ S
Sbjct: 424 GSGIAEDEIPIVLASFGQGTNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRS 475


>gi|3953516|dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii]
          Length = 917

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L+ +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L + V D  RL QI + ++SNA+ F+ +G T++ +A       D+     SV++ G  +
Sbjct: 391 PL-ALVGDPLRLKQILTNLISNAIKFTREG-TIVARAMVEDEEEDSVQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 922

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 129/262 (49%), Gaps = 15/262 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T+  R E AL    EA  +A+  K+ F+ ++S+E+R+PL  ++G   L++ S   +
Sbjct: 524 FTDITERKRYEDALVVAKEAAEQANRAKDEFLANISHEVRTPLNGVMGMLQLIRVS---A 580

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + +Q   V+    SS  LL ++ND+LD + ++AG + L      L  L+ +       +
Sbjct: 581 TSGEQLANVDIAIQSSRNLLRVLNDVLDFSKIEAGKLDLYNEPFDLAGLMRQCVSLFKQQ 640

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             E  + +   I       ++ D  R+ Q+   +L NA+ F+  GS  +   A  + +  
Sbjct: 641 ADEKGLVLDSRIDPSARECYLGDEGRIRQVLFNLLGNAIKFTMYGSITLEAYALAHPEPG 700

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                FSV + G  IP+     +F+ F  V ++   + +GVGLGL IV+  I L GG + 
Sbjct: 701 CERLFFSVTDTGVGIPDSKVDYIFDSFTQVDSSLSRKYKGVGLGLPIVKRLIRLLGGTLV 760

Query: 774 ISSSDEGVTTI----NCRIPSK 791
           + S     TTI      RIP+K
Sbjct: 761 VDSEMGAGTTILFNVQVRIPAK 782


>gi|311747357|ref|ZP_07721142.1| sensory box sensor histidine kinase/response regulator
           [Algoriphagus sp. PR1]
 gi|311302642|gb|EAZ83239.2| sensory box sensor histidine kinase/response regulator
           [Algoriphagus sp. PR1]
          Length = 938

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 11/260 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E    PL   + M    +VT+    E+ L E  +A  +A   K+ F+ ++S+E+R+P+ 
Sbjct: 514 FEIRYFPLDENRMMSLAKDVTNQKVWEKGLIEAMKAADEASRAKSEFLANMSHEIRTPMN 573

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G  DLL  +   +L+ +QSQY+E I  S + LL+++ DILD + ++AG M LN +  
Sbjct: 574 GLLGIIDLLDHT---NLDEEQSQYLEIIKNSGSSLLSIIKDILDYSKIEAGKMDLNPTLG 630

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              + L +  Q       E +I +K  I     G F  D  R+ Q+   ++ NA+ F+ +
Sbjct: 631 NPAEELEKQIQIFYGLAQEKSITLKTDIGKAAYGLFETDFDRINQVILNLVGNALKFTPQ 690

Query: 705 GS--TVILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
               TV + A +   +  +    VK++G  IPE    S+ + F  V ++     +G GLG
Sbjct: 691 NGQVTVSMDAEQIENELHYLKIQVKDSGIGIPEKHIPSLTDPFFQVESSSTRSYQGTGLG 750

Query: 758 LSIVESFINLHGGHVSISSS 777
           L+I +  + L GG ++I+S+
Sbjct: 751 LAIAKKIVELMGGELNINST 770


>gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1823

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ 
Sbjct: 1343 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADSNLTPKQVEFA 1402

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  + + 
Sbjct: 1403 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLS 1462

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A RD            
Sbjct: 1463 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGRDVPVAIREQLLEA 1522

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1523 GSLRDPDADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQ 1582

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1583 LLGGEIHAQSEPGRGSTFTLYLP 1605


>gi|254509661|ref|ZP_05121728.1| PAS domain containing protein [Rhodobacteraceae bacterium KLH11]
 gi|221533372|gb|EEE36360.1| PAS domain containing protein [Rhodobacteraceae bacterium KLH11]
          Length = 502

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 168/390 (43%), Gaps = 26/390 (6%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
           T +K +  S+ I   ++  +   + VW  D A  + W N +Y        +   + +   
Sbjct: 130 TPVKHRDPSDPI---RLAMEQAPYPVWLVDNAKKVRWCNAAY--------VTLARKVAGP 178

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI- 299
                  I         L +    ++   +      + + RV+    +   A+D++  + 
Sbjct: 179 DADLTSPIFPAFGDEPPLGRKTRVSIPVKDSTAKLWFDLTRVIRDQDQLCYAVDINAIVE 238

Query: 300 --TVNDQLTHTY-EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             T   +   T  +    L++ +AIFD+NR L   N + ++L  +   FL+  PS     
Sbjct: 239 AETAQRKFVQTMTKTFAQLSIGLAIFDRNRQLALFNPALIDLTTLPPDFLSLRPSLSSFF 298

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + LR  + +PE  N+++W+  +  + ++++   +++TW LP+G    V    +P G   +
Sbjct: 299 DRLRDQHMMPEPKNYRSWRRQMNDLLEAAQDGNYQETWSLPSGSVYSVSGRPHPDGAVAF 358

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW-KTEENR 473
           +FE++T ++ L  ++ + + +    +D L++ +AVF  DG +  +N A+  +W   +E  
Sbjct: 359 LFEDITAEITLTRRFRSEMDLMQSILDKLADAIAVFTDDGSLAFTNYAYHMMWGDCDEVG 418

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSII 531
             P T    +     ++ +      L   I    +  + R    G L L +   +  ++ 
Sbjct: 419 FEPLT----VLEITRQWQDRCTATPLLGEIRDFVTGRENRAEWSGELALKTGGTVTCTVS 474

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           P+ N  T++ F   T+S  AE A   K  A
Sbjct: 475 PMQNGATIVRF--ATESAAAEIARMHKISA 502


>gi|166367112|ref|YP_001659385.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
 gi|166089485|dbj|BAG04193.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
          Length = 731

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 19/246 (7%)

Query: 552 ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ER + E+ + L+        A+  K+ F+ ++S+EL +PLT IIG +  L+  K  + N+
Sbjct: 343 ERRVIERTQELQDTLMAAEAANLCKSEFLNNISHELLTPLTCIIGLSSTLQ--KCSAANN 400

Query: 605 -----KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                KQ  Y++ I  +   LL L+ND+L+ + V AG   L+     L  L N V + I 
Sbjct: 401 FLPPDKQKHYLKVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEIIK 460

Query: 660 TKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           T+    E N+ +++    K   F AD  R+ QI   +L NA+ F+ +   V L+  ++  
Sbjct: 461 TEAETKEINLILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAVTLRLWKEGS 520

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             IF V++ G  IP      +F +F       +RR  GVGLGL++ +  + LH G + + 
Sbjct: 521 QVIFQVEDTGIGIPAQKIPLLFEKFTQLDGSRKRRYGGVGLGLALTKQLVELHRGTIEVE 580

Query: 776 SS-DEG 780
           S  D+G
Sbjct: 581 SCLDKG 586


>gi|939724|gb|AAA87840.1| putative sensor kinase; regulatory protein for production of
           antifungal antibiotics [Pseudomonas fluorescens Pf-5]
          Length = 917

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|29346064|ref|NP_809567.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337958|gb|AAO75761.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 660

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E AL    E   +A+++K++FV ++S+E+R+PL  I+GF+ LL  +       +Q +Y 
Sbjct: 416 SEIALRHAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTV--ETTDEQKEYA 473

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNIRI 669
           + I  +S +LL L++D+LD++ +++G +   Y    ++N   N +  +   +  + ++R+
Sbjct: 474 DIIQTNSELLLQLISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTRKNRTRDIDVRL 533

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNG 727
           ++  +  +     D  RL Q+   +L+NA+ F+  G ++ L    D  D   +FSV + G
Sbjct: 534 QMPKEPYM--LYTDPLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTG 591

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + IPED  + VF RF       Q  G GLGL+I +  I   GG + I  +
Sbjct: 592 AGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQRMGGDIWIDKN 639


>gi|325110130|ref|YP_004271198.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324970398|gb|ADY61176.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 538

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 10/235 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L     A   A+  K++ + ++S+E+R+P+T ++G  D+L  S   SLN  Q   +  
Sbjct: 140 KRLKNSERAADSANRAKSALIGNISHEIRTPMTAVLGLCDVLLQS---SLNDDQRNLLSM 196

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I  + + L+ +VND+LD++ ++A ++++    I L D L+++   +  + +EN+  + V 
Sbjct: 197 IRDNGSYLVEIVNDLLDISKMEADMLEIKPLAINLRDFLDDLISIMGVRANENSTTLDVG 256

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI-FSVKNNGS 728
            +D       AD  RL QI   +LSNA+ F+  G   +    A  D+ + I F V++NG 
Sbjct: 257 FADDVPEWIFADPIRLRQILLNLLSNAIKFTPNGKVRLEAQNAGNDSQNLIRFVVEDNGC 316

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
            IP++  +++F  F+ +      + RG GLGLSI    I   GG + + S  DEG
Sbjct: 317 GIPQEDLENIFLPFMQSGTDLANRSRGTGLGLSICRRLIVAMGGRIDVESVIDEG 371


>gi|194292534|ref|YP_002008441.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226438|emb|CAQ72387.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1102

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 12/251 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  +    +VT++ R E  L E   A   A+  K+SF+  +S+E+R+PL  ++G  +LL
Sbjct: 484 RAALLCALNDVTEARRGEARLREAIRAADAANRAKSSFLATMSHEIRTPLNGMLGSIELL 543

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S+   L+ +Q   +  +  +S  L++++ND+LD + ++AG M L      L++++ EV
Sbjct: 544 SLSR---LDPRQRDQLAVMQHASQSLIDIINDVLDFSKIEAGQMSLQPRPCRLDEVVEEV 600

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--- 710
            ++ A +     +R+  I+D  L   V AD  +L QI + ++SNA+ F+ +G  ++    
Sbjct: 601 TRNFAAEAARKRLRLLCINDPSLSEPVMADAVKLEQILNNLISNAVKFTEQGKVIVTARR 660

Query: 711 -KAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            ++A   G       V + G  I     + +F  FV       R   G GLGLSI    +
Sbjct: 661 KRSAHGGGAEGVELRVVDTGIGIAAHDQRRLFEPFVQAEQSDTRHYGGTGLGLSICRRLV 720

Query: 766 NLHGGHVSISS 776
            L  G + + S
Sbjct: 721 ELMRGEIRVVS 731


>gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation
           [Herminiimonas arsenicoxydans]
 gi|133738736|emb|CAL61783.1| Sensor protein KdpD [Herminiimonas arsenicoxydans]
          Length = 921

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT+++G ++ L  SK   L S Q +  + +   +  + NL
Sbjct: 680 ESERLRNSLLSALSHDLRTPLTSLVGLSESLTMSK-PPLTSSQQELAQALHDEARRMSNL 738

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V+++LD+A + +G +K N   +   +++    ++  + +  + I+ ++  D  L  F  D
Sbjct: 739 VSNLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLPLVRF--D 796

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
              + ++   ++ NA  ++  GS +++ AA  +G F+  SV +NG  +P    +++F++F
Sbjct: 797 AVLIERVLCNLIENAAKYTPAGSRIVI-AAEISGRFLEVSVYDNGPGLPAGQEEAIFDKF 855

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                     GVGLGL+I  + +  H G +  + S +G  +IN  +P
Sbjct: 856 TRGERESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902


>gi|297156766|gb|ADI06478.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1814

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1309 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADGNLSPKQVEFA 1368

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1369 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALIQLVDYVEATFRPLTAEKGLDFS 1428

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI------- 720
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D  D I       
Sbjct: 1429 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPDGIREQLLEH 1488

Query: 721  ------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                        FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1489 GALRDPDAEMIAFSVTDTGIGIASSKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1548

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1549 LLGGEIHAASEPGRGSTFTLYLP 1571


>gi|256392512|ref|YP_003114076.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
 gi|256358738|gb|ACU72235.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
          Length = 1482

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 131/247 (53%), Gaps = 7/247 (2%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A   L ++ + L  A ++K+ F+ ++S+ELR+PL +++    LL  +   +L  +Q  +
Sbjct: 937  QARLTLEDRAQQLALASKVKSEFMANMSHELRTPLNSMLILARLLADNVDTNLTPRQVDF 996

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I ++ + LL L+NDILDL+ ++AG M++   +  + DL   +  +      E  +R+
Sbjct: 997  AQTIHSAGSDLLELINDILDLSKIEAGRMEVQNESWPIADLAEGLAATFQPLAAEKGLRL 1056

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD-NGD--FIFSVK 724
            +V ++ G   +  AD QR+ QI   +LSNA+ F+  G  T+ + AAR  +G+    F+V 
Sbjct: 1057 RVDVTAGAPATVTADSQRVQQILRNLLSNAVKFTDTGEVTLRVTAARGAHGEPAIAFAVV 1116

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I ED  + +F  F        R+  G GLGLSI      L    + +SS+    +
Sbjct: 1117 DTGIGIAEDKLELIFEAFQQADGTTSRQYGGTGLGLSISRELTRLLSAELRVSSAPGRGS 1176

Query: 783  TINCRIP 789
            T   ++P
Sbjct: 1177 TFTLQLP 1183


>gi|222099707|ref|YP_002534275.1| Sensor protein [Thermotoga neapolitana DSM 4359]
 gi|221572097|gb|ACM22909.1| Sensor protein [Thermotoga neapolitana DSM 4359]
          Length = 412

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 185/394 (46%), Gaps = 45/394 (11%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGET----IDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +++FE L   +D        V+V  +     ++ LSE + +   +G I   N A R L  
Sbjct: 46  LYLFERLKKYIDNLKDRIARVEVSRDNFLTILNSLSEPIFILDREGNITFLNEAARRLV- 104

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGW---DLFAAIITSFDDERKSLQGTLELLSDSV 525
             ++R+SP            RYY   + +   ++    I S + +    +GTL    ++ 
Sbjct: 105 --QDRISP---------EGRRYYEIFEDYYINEMVEETIKSLEPQ----EGTLVTYIEND 149

Query: 526 LEY---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +Y    +IP+        FV +   V  ER L          DE++  F+  VS+ELR+
Sbjct: 150 KKYFHVKVIPVDLKSGDKIFVILFHDVTKERKL----------DEMRREFIATVSHELRT 199

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT+I G+ + L    L +      ++++ I   S  + +L+ND+LDL  ++   ++   
Sbjct: 200 PLTSIHGYAETLLEDDLEN-KELVKRFLKIIEEESARMTHLINDLLDLEKMEESSVEFEM 258

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + L ++++ V + +     EN + +++  D +  +   +++RL+Q+   ++ NA+ ++
Sbjct: 259 KELDLCEVVDYVYRIVQPIAEENEVELEI--DCENVTVKGNKERLIQMLLNLVDNAVKYT 316

Query: 703 S---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           S   KG   +   A D  D+ +  V++ G  IP++    +F +F  V  A   +  G GL
Sbjct: 317 SLKEKGEKKVWVRAYDTPDWAVIEVEDTGPGIPKEAQSRIFEKFFRVDKARSRKMGGTGL 376

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GL+IV++ ++ HGG + + S     T +   +P 
Sbjct: 377 GLTIVKTIVDRHGGKIEVESEVGQGTLMRVYLPK 410


>gi|126658998|ref|ZP_01730139.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619655|gb|EAZ90383.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 881

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 127/252 (50%), Gaps = 24/252 (9%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E+AL E N A       K+ F+  + +E+R+PL  + G T LL  ++L   N +Q ++V
Sbjct: 227 SEQALEELNRA-------KSEFLAMIGHEIRTPLNAVTGMTGLLLDTQL---NDQQKEFV 276

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL ++N+ILD + ++A  ++L      L   + EV +   ++  + N+ + 
Sbjct: 277 SIIRNSGENLLTMINNILDFSKIEAQKLELEEQPFELGPCIEEVLRLFVSQASKKNLELA 336

Query: 671 -VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNG-----D 718
            +I      + + D  RL QI + ++ NA+ F+ KG  VI      +K+ +D+      +
Sbjct: 337 YLIESNTPSAIIGDSTRLKQILANLIGNAVKFTKKGEVVIYVNATPIKSRQDSKQNSRYE 396

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F+VK+ G  IP D C  +F  F        R+  G GLGL+I +    L GG++ + S
Sbjct: 397 LRFAVKDTGIGIPSDRCNRLFQPFSQVDASTTRKYGGTGLGLAISKGLSELMGGNMWVHS 456

Query: 777 SDEGVTTINCRI 788
           ++   +T N  I
Sbjct: 457 TEGKGSTFNFTI 468


>gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
 gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
          Length = 1117

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 5/227 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + ++++NE L+ AD++K+ F+   S+ELR+PL  ++G  + L     G +   Q + +E 
Sbjct: 430 KVISQQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQKSQRRQLEM 489

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G + +N   + L   +  V +  +  +    +RI   
Sbjct: 490 IINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQ 549

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L   +AD QRL QI   ++ NA+ ++S+G  +IL +          V + G  IP 
Sbjct: 550 IPNDLPLVLADEQRLEQILYNLVGNAIKYTSEGK-IILSSTVLESQIRIQVVDTGQGIPA 608

Query: 733 DMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISS 776
           +  + +F   +  A+ G    R+G GLGLSI    I+L GGH+ +SS
Sbjct: 609 EQLEHIFEPLI-QANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSS 654


>gi|48256736|gb|AAT41590.1| GacS [Pseudomonas fluorescens]
          Length = 917

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 17/243 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786
                +++F  F    N+   Q  G GLGL I +  +   GG + + S+  EG    I+ 
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISL 508

Query: 787 RIP 789
           R+P
Sbjct: 509 RLP 511


>gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016]
 gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 1072

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           +VT     E+ L +      +A E+K+ F+ ++S+E+R+P+  IIG + L LKT     L
Sbjct: 275 DVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTD----L 330

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ  YV  I +S+T+LL ++NDILD + ++AG + +  +   L+D+ + V      K 
Sbjct: 331 TPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKA 390

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720
            E  + +   +        + D  RL QI   +++N++ F+ KG  TV +   R+  D +
Sbjct: 391 FEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEITVSVHHIRNVEDLV 450

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F + + G  + +   KS+F  F        R+  G GLGLSI    + L GG + + 
Sbjct: 451 ELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVE 510

Query: 776 S 776
           S
Sbjct: 511 S 511


>gi|331700971|ref|YP_004397930.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128314|gb|AEB72867.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus buchneri NRRL B-30929]
          Length = 388

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 138/259 (53%), Gaps = 12/259 (4%)

Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N Q+++  +N + DSV   +++ E+    R  +  K+  + +VS++LR+PLT+I+G+  L
Sbjct: 121 NTQSVVESINALVDSVI--KSMDEE----RAIESSKDELITNVSHDLRTPLTSILGYLGL 174

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +  S      +Y E     +  + +LV+++ +   V      L+ S I LN ++ +
Sbjct: 175 IRDKQYHS-QEDLLKYTEIAYLKAKQMKSLVDNLFEYTKVKQTGTPLSISKIDLNQMMEQ 233

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   +  ++ + I      K     AD ++L ++F+ ++SNA+ +   G  + L AA
Sbjct: 234 LVASFELEADKSGLAIAAKETDKPLYIEADAEKLGRVFNNLISNAIKYGKGGHHIYLSAA 293

Query: 714 RDN-GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
               G+ +  V N+G  IP+     +F RF  V ++      G GLGL+I +S I+LHGG
Sbjct: 294 VGQPGEVVIHVANDGPEIPQKSLDQIFERFYRVESSRNKDTGGSGLGLAIAQSIIDLHGG 353

Query: 771 HVSISSSDEGVTTINCRIP 789
           ++++ SSDE +TT    +P
Sbjct: 354 YINV-SSDEKLTTFAIHLP 371


>gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1097

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 11/251 (4%)

Query: 534 PNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           P +   + FV + T   + E  L        KA   K+ F+  +S+ELR+PL  +IG T 
Sbjct: 539 PASSLCIGFVLDATRQKQTEANLLAAKLTAEKASAAKSEFLATMSHELRTPLNGVIGMTQ 598

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  ++L   +S Q Q+     +S   LL L++DILDL+ V+AG ++L      L +L+ 
Sbjct: 599 LLMNTEL---DSDQHQFARACHSSGKTLLALISDILDLSKVEAGRLELEQQPFRLGNLIT 655

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----T 707
           EV+ S    +  + +  +       G  +  DR RLL++   +L NA  F+ +GS    T
Sbjct: 656 EVEDSTRPALEADGLTFQNTRQFPEGLVLRGDRVRLLRVLMNLLGNAGKFTPEGSISLVT 715

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            + + + D  D  FS+ + G  I       +F+ F        RR  G GLGL+I +  +
Sbjct: 716 RMEQPSEDTADLHFSITDTGIGIEGSKQGRLFDAFTQLDSSTTRRYGGSGLGLAICKHLV 775

Query: 766 NLHGGHVSISS 776
               G + + S
Sbjct: 776 EAMEGEIGVES 786


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 1240

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 15/246 (6%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TM+T +        E+ L +  +A  ++  IK  F  +VS+E+R+PL  +IG  +LLK  
Sbjct: 247 TMMTVLEAR-----EQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNM 301

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN KQ +YV+    S   LL L+ +ILD + +++G  KL+     L ++L++V   
Sbjct: 302 ---GLNPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGL 358

Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
           +A +     + +  V+ D    S   D  R+ QI   +++NA+ F+ +G   I    L+ 
Sbjct: 359 LAAQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEK 418

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             +     F V++ G  IP +    VF  F        R+  G GLGL+I    ++L GG
Sbjct: 419 KAEKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGG 478

Query: 771 HVSISS 776
            + + S
Sbjct: 479 DIGVES 484


>gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
 gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
          Length = 1072

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           +VT     E+ L +      +A E+K+ F+ ++S+E+R+P+  IIG + L LKT     L
Sbjct: 275 DVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTD----L 330

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ  YV  I +S+T+LL ++NDILD + ++AG + +  +   L+D+ + V      K 
Sbjct: 331 TPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKA 390

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720
            E  + +   +        + D  RL QI   +++N++ F+ KG  TV +   R+  D +
Sbjct: 391 FEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEITVSVHHIRNVEDLV 450

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F + + G  + +   KS+F  F        R+  G GLGLSI    + L GG + + 
Sbjct: 451 ELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVE 510

Query: 776 S 776
           S
Sbjct: 511 S 511


>gi|220907215|ref|YP_002482526.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863826|gb|ACL44165.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1501

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 544  NVTD--SVRAERA---LTEKN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            ++TD  ++ AER    L+E+   EA   A+ IK+ F+  +S+ELRSPL  I+G+T LL+T
Sbjct: 1100 DITDRKAIEAERERLLLSERRCREAAESANRIKDEFLAVLSHELRSPLNPILGWTKLLQT 1159

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                   ++Q+  ++ I  ++ +   L+ D+LD++ +  G M LN S + L   +     
Sbjct: 1160 RPFDPQRTQQA--LQTIERNAKLQTQLIEDLLDISRILQGKMVLNTSPVNLITTIEAALD 1217

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            ++        I ++      +G    D  RL QI   +L+NA+ F+  G  V+++  + +
Sbjct: 1218 TVRLAAETKGIELQTCLSPAVGRVYGDSTRLQQIVWNLLTNAVKFTPAGGKVLIRLEQVD 1277

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                  V++ G  I       VF  F     +  R+  G+GLGL+IV      HGG V +
Sbjct: 1278 SFAQIQVQDTGKGISPAFLPHVFEYFRQEDSQTTRKFGGLGLGLAIVRYLTEQHGGTVEV 1337

Query: 775  SSSDE 779
             S  E
Sbjct: 1338 ESRGE 1342


>gi|158338213|ref|YP_001519390.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158308454|gb|ABW30071.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 3309

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 135/284 (47%), Gaps = 24/284 (8%)

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-AER--ALTEKNEALRKA 565
            D + ++ G L ++ D      I PL  A+  L  +N     R +ER  AL + N AL +A
Sbjct: 2779 DVQGNVMGILAMIED------ITPLKQAEETLKNINEELEARVSERTAALEQTNHALAEA 2832

Query: 566  DEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             EI       K+ F+ ++S+ELR+PL  I+G+  +L  S    ++ +  + +E I    +
Sbjct: 2833 KEIADSANQAKSEFLANMSHELRTPLNGILGYAQILNRSD--QISPRDKRGLEVIHQCGS 2890

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL L+NDILDL+ ++A  ++LN     L  LL+ V      K  +  I +    D  L 
Sbjct: 2891 HLLTLINDILDLSKIEARKLELNPHPTDLLTLLSSVVDMFHLKATQKGIELLFQLDNDLP 2950

Query: 679  SFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPED 733
              V  D +R  Q+   ++ NA+ F+ KGS       L+A        F++ + G  I  +
Sbjct: 2951 KGVEIDEKRFRQVLINLMGNALKFTEKGSVTFQILQLEANAGQATLRFAIIDTGVGIATE 3010

Query: 734  MCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                +F  F      R    G GLGL+I +  + L GG + +SS
Sbjct: 3011 QLSRLFKAFEQVGDPRNHTEGTGLGLAISQRIVQLMGGDIQVSS 3054


>gi|23501466|ref|NP_697593.1| sensor histidine kinase [Brucella suis 1330]
 gi|161618552|ref|YP_001592439.1| integral membrane sensor signal transduction histidine kinase
           [Brucella canis ATCC 23365]
 gi|225627084|ref|ZP_03785122.1| sensor histidine kinase [Brucella ceti str. Cudo]
 gi|254701372|ref|ZP_05163200.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 5 str. 513]
 gi|254703917|ref|ZP_05165745.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 3 str. 686]
 gi|254707707|ref|ZP_05169535.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M163/99/10]
 gi|254709710|ref|ZP_05171521.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis B2/94]
 gi|254712867|ref|ZP_05174678.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M644/93/1]
 gi|254716779|ref|ZP_05178590.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M13/05/1]
 gi|256031201|ref|ZP_05444815.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M292/94/1]
 gi|256159299|ref|ZP_05457094.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M490/95/1]
 gi|256254609|ref|ZP_05460145.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti B1/94]
 gi|256369016|ref|YP_003106524.1| sensor histidine kinase [Brucella microti CCM 4915]
 gi|260168337|ref|ZP_05755148.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|260566834|ref|ZP_05837304.1| sensor histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261757798|ref|ZP_06001507.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|294851947|ref|ZP_06792620.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|23347370|gb|AAN29508.1| sensor histidine kinase [Brucella suis 1330]
 gi|161335363|gb|ABX61668.1| integral membrane sensor signal transduction histidine kinase
           [Brucella canis ATCC 23365]
 gi|225617919|gb|EEH14963.1| sensor histidine kinase [Brucella ceti str. Cudo]
 gi|255999176|gb|ACU47575.1| sensor histidine kinase [Brucella microti CCM 4915]
 gi|260156352|gb|EEW91432.1| sensor histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261737782|gb|EEY25778.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|294820536|gb|EFG37535.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 609

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556


>gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 913

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     LN+ QS Y++ I  S+  LL
Sbjct: 282 QEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTP----LNATQSDYLQTIERSANNLL 337

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L +   +L + ++EV   +A   HE  I + + I +      
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFLLRETIDEVTVLLAPSAHEKGIELTLNIRNDVPEHV 397

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + +L NA+ F+ KG+  I   L++A  +  +    V + G  I E    
Sbjct: 398 IGDPMRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVLVHDTGIGISERQQS 457

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 458 QLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 499


>gi|86160538|ref|YP_467323.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85777049|gb|ABC83886.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1853

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 3/244 (1%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A R+L EK E L+     K+ F+ ++S+ELR+PL +++  + +L  ++ G+L  +Q ++ 
Sbjct: 1438 ASRSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTVEQVKFA 1497

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              +  S   LL L+N+ILDL+ ++AG M +      L  + ++++Q+         +  +
Sbjct: 1498 STVYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQ 1557

Query: 671  VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V     L   +  D  RL QI   ++SNA  F+ +G  V+  +    G   F+V++ G  
Sbjct: 1558 VRMAPDLPDRIHTDPTRLQQILKNLISNAFKFTERGEVVLEVSPAAGGALAFAVRDTGIG 1617

Query: 730  IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IP D  K +F  F        R+  G GLGL+I      L GG + + S+    +     
Sbjct: 1618 IPADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLV 1677

Query: 788  IPSK 791
            +P++
Sbjct: 1678 LPAR 1681


>gi|254784391|ref|YP_003071819.1| PAS domain containing histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686889|gb|ACR14153.1| PAS domain containing histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 1096

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 171/361 (47%), Gaps = 33/361 (9%)

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +G+ +   D RI  +NP F  L  ++    S G  +R+        +  ++  D     +
Sbjct: 500 QGLVITTLDARITYTNPMFTRLTGSDTTPES-GRSLRD--------FYPAETADFLDKDV 550

Query: 505 TSFDDERKSLQGTLELL----SDSVLEYSIIPLPNAQTMLTFVNV-----TDSVRAERAL 555
                +R   +G L LL    +++   ++I  + +      F+ V     ++  R E+ L
Sbjct: 551 FPITRQRGVWRGELALLNAQGANTTTLHTIFTVMSEYDTPLFLGVIITDISEQKRIEQEL 610

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E    A+  K+ F+ ++S+E+R+PL  IIG+  LL       L  +    +E+I +
Sbjct: 611 EKAKEDAEFANRSKSMFLANMSHEIRTPLNAIIGYAQLLTHDT--ELRGETHNQIEHIYS 668

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYST----IVLNDLLNEVKQSIATKMHENNIRIKV 671
           +   LL L+NDILDL+ +++G  +L  +T    + LN LL  ++    TK    N  + +
Sbjct: 669 AGNHLLGLINDILDLSKMESGKSRLTMTTFDLSVELNTLLGMMEHRAVTKGLRLNADLDL 728

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI 730
            S   + S   DRQ+L QI   +L NA+ F+S+G   +    R   D I   V + G  I
Sbjct: 729 PSPALVTS---DRQKLAQILINLLGNAIKFTSEGEVSL--QCRHQADRIRLVVSDTGEGI 783

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  K +F  FV    +G+R   G GLGL +V++F  L GG +++ S+    T +   +
Sbjct: 784 SAEEQKYLFTPFVQGV-QGERVGSGTGLGLILVKNFTALLGGELTLESTAGRGTRVIVSL 842

Query: 789 P 789
           P
Sbjct: 843 P 843


>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas
            ingrahamii 37]
          Length = 1574

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 10/231 (4%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R LT  N A+ KA+  K+ F+ ++S+E+R+P+  IIG ++L   S    +  +   Y+  
Sbjct: 811  RRLTMMNRAIHKANMAKSEFLANMSHEIRTPMNAIIGLSEL---SLNQDMTPQLRDYLSK 867

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I +S   LL ++N ILD + ++AG + L      L D+L+ +  +    + E NI +   
Sbjct: 868  IHSSGNSLLGIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITS 927

Query: 673  SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727
             D  +    V D  R  QIF+ +++NA+ F++KG   I  +  +  D     +FSV + G
Sbjct: 928  IDPDVPWHLVGDPLRTGQIFTNLINNAIKFTNKGQITICASCLEKDDKQVRLLFSVADTG 987

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              IP+D   S+F  F        R+  G GLGLSI +  +    G + I S
Sbjct: 988  LGIPKDRIASLFEPFAQADGSTSRKHGGTGLGLSICKRLVEEMNGRIWIES 1038


>gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
 gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
          Length = 1072

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           +VT     E+ L +      +A E+K+ F+ ++S+E+R+P+  IIG + L LKT     L
Sbjct: 275 DVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTD----L 330

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ  YV  I +S+T+LL ++NDILD + ++AG + +  +   L+D+ + V      K 
Sbjct: 331 TPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKA 390

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720
            E  + +   +        + D  RL QI   +++N++ F+ KG  TV +   R+  D +
Sbjct: 391 FEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEITVSVHHIRNVEDLV 450

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F + + G  + +   KS+F  F        R+  G GLGLSI    + L GG + + 
Sbjct: 451 ELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVE 510

Query: 776 S 776
           S
Sbjct: 511 S 511


>gi|37521062|ref|NP_924439.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212058|dbj|BAC89434.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 602

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 7/232 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+N A   A+  K+ F+  VS+ELR+PL +I+GFT LL+  +      + +  ++ I  +
Sbjct: 367 ERNRA-EVANRAKDEFLATVSHELRTPLNSILGFTQLLR--RHAGDPERLAVALDAIERN 423

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +     L  D+LD++ +  G +KL    + +N L++   +++ T     NI +  I    
Sbjct: 424 AKAQARLTEDLLDVSRIITGKLKLTIQPVRVNALVDAAIETMRTAAEAKNIALSAIYPEA 483

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             +  AD  RL Q+   +LSNA+ F+  G  + +   R  G    +V ++G  I  +   
Sbjct: 484 PCTLQADSNRLQQVIWNLLSNAIKFTPVGGRIRVSVERRAGQVHIAVADSGMGIAAEFLP 543

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVTTI 784
            VF+RF        R   G+GLGL+IV   + LHGG V   S+  ++G T +
Sbjct: 544 FVFDRFRQADSSSTRTFGGLGLGLAIVRHLVELHGGSVEAHSAGPNQGATFV 595


>gi|330982346|gb|EGH80449.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 637

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL+     S  
Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPAS-- 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   + +I  +   LL L+N++LD+A ++AG + L    + L+ +L E    ++    
Sbjct: 438 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAA 495

Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K + +   ++G  VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 496 DANIELKPLPNLPDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAEQVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ DEG
Sbjct: 555 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 614

Query: 781 VTTINCR 787
                CR
Sbjct: 615 -----CR 616


>gi|262381430|ref|ZP_06074568.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296607|gb|EEY84537.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 423

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 20/251 (7%)

Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P P A  +L  +  ++T+  + + AL +    +++AD++KN+F+ ++S+E+R+PL  I+G
Sbjct: 151 PDPGASPLLLIMLNDITEQRQDQLALMK----VQEADKMKNAFIANMSHEIRTPLNAIVG 206

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  L+  +   S   +Q +Y   I+ +  +LL L+NDILDL+ +++G +  N S + L D
Sbjct: 207 FAHLVTETTNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRD 263

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706
           +  E     + KM  +   + ++ +      V    D  R+ Q+   +LSNA+ F+SKG 
Sbjct: 264 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 320

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +     D   F+  SV + G  I E+  +SVF RFV      Q  G GLGL I +  +
Sbjct: 321 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 376

Query: 766 NLHGGHVSISS 776
              GG + + S
Sbjct: 377 EQLGGEIGVRS 387


>gi|119897783|ref|YP_932996.1| putative histidine protein kinase [Azoarcus sp. BH72]
 gi|119670196|emb|CAL94109.1| putative histidine protein kinase [Azoarcus sp. BH72]
          Length = 613

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 12/262 (4%)

Query: 526 LEYSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E S+ PL   +  L      ++T+  R ERAL EKN  L +A+  K+ F+  +S+ELR+
Sbjct: 339 VEISLSPLETEEGTLVSSAIRDITERKRFERALQEKNVELAQANAAKDHFLASMSHELRT 398

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  IIGFT  L     G LN  Q + +  +  S++ LL+L+ND+LD+A ++AG  +  +
Sbjct: 399 PLNAIIGFTGTLLMKLPGPLNEDQEKQLRTVQRSASHLLSLINDLLDVARIEAGKFEPVF 458

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + L   L E+   +  +     +R+++   G       D++   QI   +L NA+ F+
Sbjct: 459 EPVDLCATLEELAVVLRPQAEAKGLRLELKLPGGSCVVETDQRAFSQIVINLLQNAIKFT 518

Query: 703 SKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVG 755
             G  + L  AR   D        V ++G  I P+D  +  + F R    A   Q  G G
Sbjct: 519 EHGR-IELALARIEADGRPAVELQVADSGIGIQPDDQTRLFAPFARITPAAGPAQ-EGTG 576

Query: 756 LGLSIVESFINLHGGHVSISSS 777
           LGL +        GG +++ S+
Sbjct: 577 LGLHLCLKLAAQLGGQIAMHST 598


>gi|291539873|emb|CBL12984.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Response regulator
           receiver domain [Roseburia intestinalis XB6B4]
          Length = 421

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 133/271 (49%), Gaps = 25/271 (9%)

Query: 537 QTMLTFVNVT--------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           QTML  V +         D+VR  R   +++ A  +  E+K  F+  +S+E+++P+  I+
Sbjct: 3   QTMLIAVLIAALVGLFLFDTVRLRRMQVQRDAAKEEVAEVKTEFLSRISHEIKTPMNVIV 62

Query: 589 GFTDLLKTSKLGSLNSKQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           G T       LG   ++  + +E     I  +S  L+ L+ND++D++ ++ G   L+   
Sbjct: 63  GAT------ALGLEETEHPERMEECLNRIRGASEFLMGLLNDLVDMSKIENGKFHLHPKP 116

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
               + LNEV+  +        IR  +  +    + + D  R  QIF  +LSNA+ F+ +
Sbjct: 117 YSFTEFLNEVENMMEPMCERKWIRFHMPHEEININMMVDPVRFFQIFFNLLSNAVKFTPE 176

Query: 705 GSTV---ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQR-RGVGLG 757
           G  V   I   A  N  F   + V +NG  + E+  + +F  F   + ++G+R  G GLG
Sbjct: 177 GGEVTFRICNYATHNNQFCADYVVSDNGMGMSEEFQQILFQPFTQESVNQGERGNGAGLG 236

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+IV S ++L GG +++ S  +  T I   +
Sbjct: 237 LAIVRSIVDLMGGTITVKSEPQKGTEIKVHL 267


>gi|295690575|ref|YP_003594268.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295432478|gb|ADG11650.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 1128

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 129/247 (52%), Gaps = 5/247 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R   A+  K   L +A + K+ F+ ++S+ELR+PL +++  + LL  +  G+L ++Q
Sbjct: 439 DLERTSAAVALKARELEQASQYKSDFLANMSHELRTPLNSLLILSKLLSDNPNGNLTAEQ 498

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHE 664
            ++ + I +S   LL+L+NDILDL+ ++AG +++   ++ L  L  +++Q  +      +
Sbjct: 499 VKFAQTIESSGNDLLSLINDILDLSKIEAGHIEVRPESVSLQRLTGDLRQLFNPVADSRK 558

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +  I+V +D  L     DRQRL Q+   +LSNA  F+ KG   +   A  N    F+VK
Sbjct: 559 LDFAIEVAADCPL-VVETDRQRLEQVLKNLLSNAFKFTEKGGVRLEIKAASNDRIAFAVK 617

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  +  D  +++F  F        R+  G GLGLSI      L GG +++ S     +
Sbjct: 618 DTGIGVSRDQQEAIFEAFRQADGTISRKYGGTGLGLSISRQLSRLLGGSITLESQPGEGS 677

Query: 783 TINCRIP 789
                IP
Sbjct: 678 VFTVTIP 684


>gi|189467251|ref|ZP_03016036.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
 gi|189435515|gb|EDV04500.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
          Length = 536

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 130/240 (54%), Gaps = 11/240 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L E  E   +A+ +K++F+ ++S+E+R+PL +I+GF+ +L  ++   +  K+ +Y +
Sbjct: 286 EQDLREAKEKAEEANRLKSAFLANMSHEIRTPLNSIVGFSSILTMTE--DMEEKK-EYNQ 342

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++T+LL +V+D+L+L+ ++AG  KL  +   L+DL   V +S A    + + ++ V
Sbjct: 343 LIQHNNTLLLKVVDDVLELSKLEAGDFKLYPAWFCLSDL---VVESAAECRMKADGKLDV 399

Query: 672 ISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             D     ++   D Q + +I S  LSNA+  +  G   I  +  D G  I SVK+ G  
Sbjct: 400 RVDKPEQDYMVELDAQYVKRILSNFLSNALKNTQSGHIDIAYSMVDGGVKI-SVKDTGCG 458

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D    VF+RF       Q  GVGLGL I +S     GG + ++S     T     +P
Sbjct: 459 IPQDKLPVVFDRFEKVDSFAQ--GVGLGLPICKSIAESMGGTIGVTSEVGAGTAFWVTLP 516


>gi|294667293|ref|ZP_06732513.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602965|gb|EFF46396.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 631

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 129/242 (53%), Gaps = 16/242 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613
           + +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +   Q  Y  +  I
Sbjct: 240 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPYYKGLSVI 294

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672
           ++S+     L++D+LDL+++  G ++L   ++   DL+ +V++++ T+      + +V+ 
Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQVLE 351

Query: 673 --SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             +       + D  RL Q+   +LSNA+ F+     + +K  RD+G  + SV ++G  I
Sbjct: 352 LHAPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGI 411

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787
             +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T   R
Sbjct: 412 AAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVR 471

Query: 788 IP 789
           +P
Sbjct: 472 LP 473


>gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 904

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L    E        K+ F+ ++S+E+R+P+  ++G   LL+T+   +L 
Sbjct: 490 DITEQHHHERELRRAKEMADAGSRAKSEFLANMSHEVRTPINGVVGMLQLLETT---ALT 546

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV     ++  L  L+ DILDL+ V++G + L  +   L +L   +         
Sbjct: 547 EEQQEYVAMAGRAAGRLSRLLGDILDLSKVESGALVLQQTPFELEELRQAILDVFGPMAR 606

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARD 715
             N+ + V ++       + D  RL QI   ++ NA+ ++  G   +           R+
Sbjct: 607 NKNLALSVDLAQALPRRVMGDDVRLRQILLNLVGNAVKYTDSGFVHVAVFPGDPDSPPRE 666

Query: 716 NGDF--IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              F  +F V + G  IP     SVF+ FV ++   G + GVGLGL+IV+  + L GG +
Sbjct: 667 GAPFEVVFVVADTGRGIPGHKLDSVFSPFVQTDPAAGPQGGVGLGLAIVKRLVELMGGRI 726

Query: 773 SISSSDEGVTTINCRIP 789
            + S +   T++   +P
Sbjct: 727 HLCSVEGQGTSMRAVVP 743


>gi|148559005|ref|YP_001258574.1| sensor histidine kinase [Brucella ovis ATCC 25840]
 gi|148370262|gb|ABQ60241.1| sensor histidine kinase [Brucella ovis ATCC 25840]
          Length = 609

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556


>gi|223937695|ref|ZP_03629597.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893667|gb|EEF60126.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 982

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 138/272 (50%), Gaps = 8/272 (2%)

Query: 523 DSVLEYSIIPLP-NAQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSY 578
           D   E  + P+P + +T++  V + D    ++A TE  +AL +  E+   K+SFV  VS+
Sbjct: 702 DFPAEIFLTPIPLHGRTVIQAV-INDITERKQAETELLKALAREKELGVLKSSFVSLVSH 760

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGI 637
           E R+PL  I+   ++L  S L  L +   Q ++E I+ ++  +  ++ ++L    V+AG 
Sbjct: 761 EFRTPLGIIMSSAEILH-SYLDQLETIHRQEHLESIAKNAKRMAGMMEEVLLFGQVEAGK 819

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           M+L+ + + L+     +K  I +   +    I +  +       AD + L  IF+ +L N
Sbjct: 820 MELHPAPLSLSSFCRRLKDEILSAT-DGQCPIVLTMEAFPTDIFADERVLRHIFTNLLLN 878

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A+ +S  GS V    A++  D +F V++ G  IPE   + +F  F   ++     G GLG
Sbjct: 879 AVKYSRAGSPVHFMVAQEGKDAVFQVRDQGIGIPEADQQWLFKAFHRGSNAANLPGTGLG 938

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L IV+  + LH G + + S  +  T I  R+P
Sbjct: 939 LVIVKRSVELHNGRIKVESVVDQGTAITVRLP 970


>gi|289642527|ref|ZP_06474671.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
           glomerata]
 gi|289507701|gb|EFD28656.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
           glomerata]
          Length = 904

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 16/253 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L EK E L  + + K  F+ ++S+ELR+PL +++    LL  +   +L  KQ  + E I
Sbjct: 387 GLEEKAEQLALSSQYKTEFLANMSHELRTPLNSLLLLAKLLADNPEANLTPKQIDFAETI 446

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            ++ + LL L+NDILDL+ V+AG M +  +T+    L + V Q       E  +  +V +
Sbjct: 447 HSAGSELLELINDILDLSKVEAGKMDVEATTVRTTTLCDAVAQIFGPLAEERGLSFEVTV 506

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI----------- 720
           +      FV D QR+ Q+   +LSNA+ F+  G   + +  A D   F            
Sbjct: 507 ASDVPAEFVTDEQRIQQVLKNLLSNAVKFTDSGEVRLDVTVASDEIAFTAPSLSAAPVAL 566

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            FSV + G  +  D  + +F  F        RR  G GLGLSI +  + L GG + ++S+
Sbjct: 567 AFSVSDTGIGVAADKLRMIFEAFQQADGTTSRRYGGTGLGLSISKELVRLLGGAIGVASA 626

Query: 778 DEGVTTINCRIPS 790
               +T    +PS
Sbjct: 627 VGQGSTFTLYVPS 639


>gi|311746666|ref|ZP_07720451.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1]
 gi|126578338|gb|EAZ82502.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1]
          Length = 1436

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            N+T  V     L E  E+  +A + K+ F+ ++S+E+R+PL  +IGFTDL+  +K   LN
Sbjct: 780  NITALVAQREELKEAKESAEEASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTK---LN 836

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q QY+  +  S+  LL+++NDILD + ++AG ++L+     L ++ ++    I  ++ 
Sbjct: 837  ETQHQYLSIVHQSANQLLSIINDILDFSKIEAGKLELDIDKCDLYEMASQATDIITYQIQ 896

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
               + + +     L  F+ AD  RL Q+   +L N+  F+ KG   +    L++  ++  
Sbjct: 897  NKGLEMLLNIGTNLPRFIYADSVRLKQVLVNLLGNSSKFTEKGEIELKIENLESEGNSNT 956

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F FSV++ G  I  +    +F  F        ++  G GLGL+I    + L    + + S
Sbjct: 957  FRFSVRDTGIGIKPEKQSKIFEAFSQEDSSTTKKYGGTGLGLTITNKLLGLMDSKLQLKS 1016


>gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
 gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
          Length = 1131

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + ++++NE L+ AD++K+ F+   S+ELR+PL  ++G  + L     G +   Q + +E 
Sbjct: 444 KVISQQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQKSQRRQLEM 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G + +N   + L   +  V +  +  +    +RI   
Sbjct: 504 IINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQ 563

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L   +AD QRL QI   ++ NA+ ++S+G  ++     +N   I  V + G  IP 
Sbjct: 564 IPNDLPLVLADEQRLEQILYNLVGNAIKYTSEGKIILSSTVLENQIRI-QVVDTGQGIPA 622

Query: 733 DMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISS 776
           +  + +F   +  A+ G    R+G GLGLSI    I+L GGH+ +SS
Sbjct: 623 EQLEHIFEPLIQ-ANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSS 668


>gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
           nagariensis]
 gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
           nagariensis]
          Length = 1021

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 10/234 (4%)

Query: 551 AERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           A RA+ E N     + L  A E K+ F+  +S+ELR+PL  IIG ++ L     G L  K
Sbjct: 267 AVRAIEEANRLATIQQLSTAIERKDDFLSAMSHELRTPLNGIIGLSESLMAGACGQLPEK 326

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + +  +  S   LL L+NDILD A +  G + + +  + +  L+ +V   ++  +   
Sbjct: 327 AVKTISTVKLSGKRLLQLINDILDAAKMKQGTLVIKHEKVDIKRLVTDV-LDLSLPLVRK 385

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVK 724
            +R+ V + G +   V D  R++QI   ++ NA  F+ +G  ++    + DN     +V 
Sbjct: 386 GVRL-VNNVGNVPKIVGDNGRIVQILYNLVGNAAKFTRQGVISITAGVSEDNIKVYVTVS 444

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  IP++    +F  F        RR  G GLGL +V+  +  HGG +++ S
Sbjct: 445 DTGVGIPKEKVPKIFGAFEQADMSTTRRYGGTGLGLHLVKELVKAHGGEITVES 498


>gi|239617738|ref|YP_002941060.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506569|gb|ACR80056.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 580

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 137/251 (54%), Gaps = 16/251 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F+++T+ +R E  L ++ E     ++ + +F  ++S+ELR+PLT I+G++++L       
Sbjct: 318 FLDITEQLRRENFLKKQKEEAELLNKSQAAFFSNISHELRTPLTIILGYSEMLYEI---- 373

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +   + + V  I+ S+  LL LVNDILD++ + +  +K+   ++ +  L+N + +   + 
Sbjct: 374 VGPAERRMVSMIADSANYLLKLVNDILDISKITSRAVKVEPESVNIKLLVNNILEQFNSL 433

Query: 662 MHENNIRIKVISDGKLG----SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           + +  I++    + KL     +FV D+ +L +I + ++ NA+ F+++G   +L     + 
Sbjct: 434 VEKKGIKL----ESKLMICRENFVTDKTKLQRILTNLIGNAIKFTNEGVVRVLVKEEGSN 489

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS----NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            F+F+V++ G  I ++    VF RFV      +    ++G GLGL + +  + L GG + 
Sbjct: 490 VFLFAVEDTGIGIKKEYQDKVFERFVQIKDDRSRVKFKKGTGLGLPLTKELVQLLGGRIW 549

Query: 774 ISSSDEGVTTI 784
           + S     TT+
Sbjct: 550 LQSEYGKGTTV 560


>gi|163795590|ref|ZP_02189556.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159179189|gb|EDP63722.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 577

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 546 TDSVRAERALTEKNEALRK--------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            DS+ A R   E  + L          A   K+ F+  VS+ELR+PL  I+GF++++   
Sbjct: 314 ADSLAAARDRAEAQQVLEAQLRAQADSASRSKSEFLALVSHELRTPLNAILGFSEIIAQQ 373

Query: 598 KLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G   + ++Q Y   I+ S   LL+L+NDILDL+ ++AG  +L   T VL D+L+    
Sbjct: 374 TFGPSTADRAQSYARDINESGNHLLSLINDILDLSKIEAGRYELMEETFVLRDVLDRCAT 433

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  ++ E N  I +   G      ADR+ ++Q+   +LSNA+ F+S    V L A   +
Sbjct: 434 LLRERVAEKN--IGLTCHGTSICLNADRRAVMQVVINLLSNAVKFTSPRGRVELFATVAH 491

Query: 717 GDFIFSVKNNGSSIP-EDMCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                +V + G  +  ED+ +S+  F +   + H     G GLGL+I E    LHGG + 
Sbjct: 492 DAIEIAVSDTGVGMSHEDLQRSLQPFGQ-ADSLHTRSSGGTGLGLNIAEMLTKLHGGSLG 550

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    T    R+P
Sbjct: 551 LRSTLGEGTVATIRLP 566


>gi|256060709|ref|ZP_05450873.1| integral membrane sensor signal transduction histidine kinase
           [Brucella neotomae 5K33]
          Length = 609

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556


>gi|238925848|ref|YP_002939366.1| VanS [Eubacterium rectale ATCC 33656]
 gi|238877525|gb|ACR77232.1| VanS [Eubacterium rectale ATCC 33656]
          Length = 354

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++A+E KN  + ++++++R+PLT +IG+  LL  +       ++ +YV+     +  L
Sbjct: 124 AAKQAEEKKNEIIMYLAHDIRTPLTTVIGYLSLLHEAP-DMPEQQKEKYVKVALNKAERL 182

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+N++ ++   +A  + +    I L+ L+ +V   I   +  N       ++  L S 
Sbjct: 183 EKLINELFEITKYNAHTVIIKKENIDLHCLIAQVIDEIYPTLSANGNTAVFTAEDNL-SV 241

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD ++L ++FS +L NA  +S   + + + A R   D   + +N G +IP++   S+F 
Sbjct: 242 NADPEKLARVFSNLLRNAASYSYPQTEITISAKRLEHDIQITFENRGKTIPQEQLNSIFE 301

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +F  + +A      G GLGLSI E  I+LHGG ++ SS +E +
Sbjct: 302 KFNRLDDARLSNTGGAGLGLSIAEEIIHLHGGKITASSQNETI 344


>gi|311746327|ref|ZP_07720112.1| sensory box histidine kinase [Algoriphagus sp. PR1]
 gi|126576563|gb|EAZ80841.1| sensory box histidine kinase [Algoriphagus sp. PR1]
          Length = 484

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 118/233 (50%), Gaps = 1/233 (0%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L+K D ++   + +VS++LR+PL  I G+ + L+          + +Y++ I AS+  
Sbjct: 251 EELKKVDSLRRELIANVSHDLRNPLAIINGYVETLQIKGDSVSEEDREKYLKIIGASTDK 310

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV+D+ DL+ +++G M L    + + +LL +            +I+I       L  
Sbjct: 311 LSQLVSDLFDLSKLESGQMSLKMERMKIQELLYDSSLKYELLAQSKDIKITTQICQNLPL 370

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD   + ++   +L NA+ ++ K   +++ A   NG     ++N+GS IP+   +S+F
Sbjct: 371 VKADLYLMDRVIQNLLDNAVKYTPKNGEILIDACESNGGVSIKIRNSGSGIPQKDLESIF 430

Query: 740 NR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +R ++ +  R    G GLGL+IV+  + +HG  + I S     T     +P++
Sbjct: 431 DRYYMIDKERKGIEGSGLGLAIVKRILEVHGSQIEIESDSVSYTEFGFDLPAE 483


>gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
 gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
          Length = 1389

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 4/245 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R  RA   + E L + D  K  F  ++S+E R+PLT I G    L+T +L        
Sbjct: 317 SARGYRAQQRRAEELAELDRAKTIFFSNISHEFRTPLTLIAGPVQELRT-RLAGAEPALR 375

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + VE I  +   L  LVN +LD + ++AG M+  Y  + L  L  E+     + + +  +
Sbjct: 376 EEVEVIHRNGLRLGRLVNALLDFSRLEAGRMQARYEPVDLAALTRELASVFRSAIEKAGL 435

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R  V           DR    ++   +LSNA+ F+  G+ + ++A    G  + +V + G
Sbjct: 436 RFDVDCPPLPFPVYVDRGMWEKVVLNLLSNAVKFTFDGA-ITVRARALGGHAVVTVADTG 494

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F RF  V NA      G G+GL++V+  ++LH G ++  S++   TT  
Sbjct: 495 VGIAEAEMPRLFERFHRVENARSRSSEGSGIGLALVKELVSLHAGEITALSAENLGTTFT 554

Query: 786 CRIPS 790
            R+PS
Sbjct: 555 IRLPS 559


>gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
 gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
          Length = 1324

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 32/283 (11%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            SF D+R+ + G + +L D                     +T+  R E  L +  +    
Sbjct: 564 ASFGDQREQVHGIVGILLD---------------------LTERKRMEEELRDAKKMADA 602

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
             + K  F+ ++S+E+R+P+  I+G   L   +    L++ Q +YV  I+ S+  LL ++
Sbjct: 603 MSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLDTTQRKYVTRINESAKNLLGII 659

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
           NDILD + ++AG + +      L+D+L+ +   I+ K  E  I   +  D  +    + D
Sbjct: 660 NDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISLKAQEKGIEFLMDIDPHIPLGLIGD 719

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
             RL Q+   +  NA+ F+ +G  VI    R   +      F+VK+ G  I ++    +F
Sbjct: 720 PLRLGQVMVNLCGNAVKFTHQGEIVISARVRQLNEQQVTLFFAVKDTGIGITQEKLAGLF 779

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           N F    N+   Q  G GLGLSI +  + L GG +S + S+EG
Sbjct: 780 NAFSQADNSITRQYGGTGLGLSISKQLVELMGGEIS-AHSEEG 821


>gi|255292073|dbj|BAH90553.1| serine/threonine kinase [uncultured bacterium]
 gi|255292618|dbj|BAH89728.1| serine/threonine kinase [uncultured bacterium]
          Length = 2112

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 132/253 (52%), Gaps = 23/253 (9%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            + +++++ +  E+A  ++  A   A + K+ F+ ++S+E+R+P+  I+GF+ L   S   
Sbjct: 1552 SLIDISERIEREQADKQRQIA-EAATQAKSEFLANMSHEIRTPMNAIVGFSKLALES--- 1607

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            SL+ KQ +YV  I  ++  LL LV+D+LD + ++AG + L      L++ L EV++   T
Sbjct: 1608 SLDRKQHEYVTSIRNAAENLLTLVSDVLDFSKIEAGKLVLETRPFRLSETLTEVERLFRT 1667

Query: 661  KMHENNIRIKV----------ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            ++   N+ +++            DG L     D  R+ Q+   ++ NA+ F+  G  VI 
Sbjct: 1668 EVRRRNLTLEIEDRTGEHPGFPEDGVL---TGDALRIQQVLVNLVGNAVKFTETGGIVIG 1724

Query: 711  KA--ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
                A ++G  +   SV + G  IP+     +F  F        RR  G GLGL+I E  
Sbjct: 1725 AEVIAANHGQLVLNLSVTDTGIGIPQAQLARLFESFEQAETSTTRRYGGTGLGLTISERL 1784

Query: 765  INLHGGHVSISSS 777
            ++L GG + ++S+
Sbjct: 1785 VDLMGGEIHVTST 1797


>gi|320012872|gb|ADW07722.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces flavogriseus ATCC 33331]
          Length = 594

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E +E   + DE +   V  +++ELR+PL+NI G+ D  +      L    S  V  +
Sbjct: 361 ALNELSERRERTDEQRRVMVSDIAHELRTPLSNIRGWLDAAQDG----LADPDSSLVASL 416

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              + +L ++++D+  LA  DAG ++LN+  + L +L  +   +  T      + +    
Sbjct: 417 QEEAGLLQHIIDDLQVLAAADAGSLRLNFRKLNLRELAEQSLDAHQTAAQAGRVALTGYF 476

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
              L +   D  RL Q+   +LSNA+  +    +VI+   R  G     V + GS I PE
Sbjct: 477 TDDL-TIEGDPVRLRQVLGNLLSNAIRHTPPNGSVIVSGYRGEGGVELHVADTGSGIQPE 535

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D+ + +F+RF        R   G GLGLSIV   +  HGG V + SS    T    R+P+
Sbjct: 536 DLPR-IFDRFWRAEQSRSRNTGGSGLGLSIVRHLVQAHGGEVHVVSSPGTETVFTVRLPT 594


>gi|239995050|ref|ZP_04715574.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 637

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 20/231 (8%)

Query: 560 EALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +AL +A+E   +K+ F+ ++S+E+R+P+  +IG   LLK S   +L ++QSQ V   S+S
Sbjct: 83  KALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKS---NLTTEQSQRVNIASSS 139

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV----I 672
           +  LL L+NDILD + ++A  +++      + +L+  + QS+A    E  + + V    +
Sbjct: 140 ANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDLSKV 199

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFI-FSVKNNG 727
           S+ K+ S   D  R+ QI + +LSNA+ F+ +G    +  +L     N   +  +V + G
Sbjct: 200 SESKINS---DPSRIQQILTNLLSNAVKFTEQGELSVTAELLPTNNQNTALMHIAVADTG 256

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             IP      +F+ F        RR  G GLGLSI +    L GG +S+++
Sbjct: 257 IGIPASKLPHLFDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTT 307


>gi|332704289|ref|ZP_08424377.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554438|gb|EGJ51482.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 614

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 2/232 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ D +K+ FV   S+ELR+PLT+I    DLLK      L+ ++ Q +         L 
Sbjct: 384 LRELDRLKSEFVMTASHELRTPLTSIGMSIDLLKDKAGSKLSDRERQLLTVAQEDVQRLK 443

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVN++LDL+ ++AG +++++  + L  +  +  + +AT+  +  + +    D  L    
Sbjct: 444 ALVNELLDLSKIEAGKLEIDFERVPLPLICEKTAKIMATQAEQAGVELAFSCDEGLPEVR 503

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
            D  ++  +   ++ NA+  + +   V + AA+  G F   SV ++G  IP +    +F+
Sbjct: 504 VDPNKITWVLVNLVGNALRHTPENGHVRV-AAKQAGRFAHVSVSDDGEGIPLEFQTKIFD 562

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +FV    R    G GLGL+I +  +  HGG + + S+    TT    +P  E
Sbjct: 563 KFVQVKSRRTSSGTGLGLAICKEIVRAHGGTIWVESTPGKGTTFTFTVPIAE 614


>gi|260175349|ref|ZP_05761761.1| putative two-component system, sensor kinase [Bacteroides sp. D2]
 gi|315923581|ref|ZP_07919821.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697456|gb|EFS34291.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 570

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 143/258 (55%), Gaps = 12/258 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++S+E+R+PL  I+GF++++  + 
Sbjct: 317 LLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 375

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+  ++   +N+L+  + + +
Sbjct: 376 --EEEEERKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 433

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
             K    +++I             DR RL Q+     +NA+ F+ KGS  +   ++ A+D
Sbjct: 434 QEKNSSPDVQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKD 493

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  F VK+ G  IP D    VF RFV  N+     +G GLGL+I    +   GG + +
Sbjct: 494 --EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGV 548

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   +    RIP  E
Sbjct: 549 ESKEGEGSRFWFRIPRSE 566


>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 778

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 118/230 (51%), Gaps = 12/230 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +A  +A+  K+ F+ ++S+E+R+P+  IIG T+LL+ +    LN+ Q      I 
Sbjct: 256 LREARDAAERANRAKSHFLANMSHEIRTPMNGIIGMTELLQET---DLNAAQRDCTRVIQ 312

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L+ ++NDILD++ ++AG ++L        + +    + +        +   +  D
Sbjct: 313 DSAAALMRIINDILDMSRIEAGRLELERLDFDPRESIERTLEPLREIAQRKGLEFAIELD 372

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729
            +L + +  D  RL QI + ++SNA+ F+ +G   +    L+   D   F+ +V++ G  
Sbjct: 373 PELPARLRGDPGRLRQILTNLVSNAIKFTEQGRVSVTLDCLERTDDWVRFVIAVRDTGIG 432

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           +  + C  +F RF S A    RR   G GLGL+I    + L GG + + S
Sbjct: 433 LSTEECSRLFERF-SQADVSTRRRYGGTGLGLAISRQLVELMGGGIDVES 481


>gi|168177679|ref|ZP_02612343.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671415|gb|EDT83389.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 615

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 124/231 (53%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++   F+ ++S+EL++PL  I     LL   +    N KQ +Y++ I  +   L+ 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEEDCNNEKQDKYLKLIKQNCYRLMK 415

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD   +D+G +KLN     + +L+ E+  S+ +      I I   ++ +      
Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741
           D  ++ +I   +LSN++ F++ G  + +   +D+G+ ++  VK+ G  IP D  +S+F R
Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGNIFVN-VKDSGENVYIHVKDTGVGIPSDKLESIFER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  V    +  + G G+GL +V+SF+ +H G V+I S     T    ++P+
Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTIKSELGKGTEFIIKLPA 585


>gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 927

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV---EYISASSTILLNLVN 625
           K+ F+ ++S+ELR+PL  IIG++++L+     + +  Q  +V   + IS S+  LL L+N
Sbjct: 425 KSEFLANMSHELRTPLNAIIGYSEMLEED---AEDMGQDDFVPDLQKISGSAKHLLELIN 481

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            +LDL+ V+AG M+L   +  +  ++  +  ++     + +  I +     +G+  AD+ 
Sbjct: 482 AVLDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQSNMISLHCPENIGTLYADQT 541

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           ++ Q    +LSNA  F+  G  V L  + D G + +FS+K+ G  +  +  + VF  F  
Sbjct: 542 KVRQSLYNLLSNACKFTESGE-VSLTISEDAGEEVVFSIKDTGIGMTPEQLEKVFKAFTQ 600

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 R+  G GLGL+I + FI + GGH+S++S     T     +P +
Sbjct: 601 ADASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGTEFTIHLPRQ 649


>gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 1026

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 7/241 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  R E  L    E    A   K+ F+ ++S+E+R+P+  +IG T+LL   K   L 
Sbjct: 620 DITDRKRVEEELQRSKEMAESATRAKSEFLANMSHEIRTPMNAVIGLTELLMDEKDEKLT 679

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S Q + VE I  S   LL+++N+ILDL  ++A + +L +  I +   +      ++  + 
Sbjct: 680 SAQRECVEMIRISGDTLLSIINNILDLTKIEANMTELEHRPIDVKGCIESSMDLVSGSVG 739

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI 720
           +  I+     +  +  F+  D  RL QI   +L+NA+ F+ +G  +  +     D+G + 
Sbjct: 740 DKRIKFSYKIEENVPQFIMGDPTRLCQILINLLNNAVKFTEQGEIAVSVSNTNLDDGGYE 799

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F+VK+ G  IPED    +F  F        R+  G GLGL+I +    +  G + + S
Sbjct: 800 IHFAVKDTGIGIPEDKMSRLFRSFSQVDASTARKYGGTGLGLAISKKLTEMMNGRMWVES 859

Query: 777 S 777
           +
Sbjct: 860 A 860


>gi|150009171|ref|YP_001303914.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937595|gb|ABR44292.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 769

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 132/243 (54%), Gaps = 12/243 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ L +K E + +++ +K++F+ ++S+E+R+PL  I+GF++LL  +     + +  ++
Sbjct: 532 KMEQELRDK-EKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAET---CHSEETREF 587

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  ++ +LL LVNDILDL+ ++AG M   YS   ++ L   + Q+  +++ +     
Sbjct: 588 CEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLY 647

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             I +     + +++ RL Q+ +  L+NA  F+ +GS  +    R++G + F VK+ G  
Sbjct: 648 CEIPEQDCVIY-SEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKG 705

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TIN 785
           I       VF RF       Q  G GLGLSI ++ + NLHG     S   +G T   TI 
Sbjct: 706 IERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763

Query: 786 CRI 788
           C +
Sbjct: 764 CAV 766


>gi|320160199|ref|YP_004173423.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994052|dbj|BAJ62823.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 467

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 6/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           ++ + +A++++      ++++LR+PLT I G+ + ++   L        Q ++ I     
Sbjct: 236 SQQIARANQLRRQMTADIAHDLRTPLTVIAGYIESMRDGVL----QPTPQRLDLIYQEIE 291

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  +VND+  L+  DAG + L+        LL            +  I +KV +   L 
Sbjct: 292 RLQKMVNDLRMLSQADAGELNLHPQPTQPLALLKRAAHLFQHHAEQAGINLKVEASETLP 351

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           + + D  R++Q+   ++SNA+ ++S G  + L+A +D       V + G+ IP +    +
Sbjct: 352 AILVDEDRMMQVLDNLISNALRYTSAGGEITLRAKQDGKQVRLQVADTGTGIPSEELPRI 411

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F RF  V  +   +  G GLGL+IV + +   GG VS  S     TTI    P+ E
Sbjct: 412 FERFHRVDPSRHSESGGSGLGLAIVRALVEAQGGKVSAESELGKGTTITTEFPALE 467


>gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1474

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 7/226 (3%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +  +L+ K  QYVE +  ++  +L 
Sbjct: 939  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELREHE--TLSPKGVQYVELMEKNTNQMLQ 996

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+L+   ++       EN +              A
Sbjct: 997  LVNQILDFRKIQNGKMRLHVSLIDFNELVVSFQKEFRVLSEENEVSFTFQLPDAAIMIWA 1056

Query: 683  DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D+++L  +   I+SNA  F+  G +  V+   A D       V++NG  IP++    VF 
Sbjct: 1057 DKEKLSIVIRNIISNAFKFTPSGGSIHVVAGLAEDGEHCFLRVEDNGIGIPQNKLTEVFE 1116

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            RF    NA     +G G+GL++ +  +NLH G +  + S EG  T+
Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGVIR-AESPEGKGTV 1161


>gi|21426070|gb|AAM52311.1|AF502252_1 sensor kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 17/243 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L S V D  RL QI + ++SNA+ F+ +G T++ +A       D+     S+ + G  +
Sbjct: 391 PL-SLVGDPLRLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIHDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTT-INC 786
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+  EG    I+ 
Sbjct: 449 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL 508

Query: 787 RIP 789
           R+P
Sbjct: 509 RLP 511


>gi|261324700|ref|ZP_05963897.1| integral membrane sensor signal transduction histidine kinase
           [Brucella neotomae 5K33]
 gi|261300680|gb|EEY04177.1| integral membrane sensor signal transduction histidine kinase
           [Brucella neotomae 5K33]
          Length = 532

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 371

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 431 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 479


>gi|119900234|ref|YP_935447.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672647|emb|CAL96561.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1064

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 114/214 (53%), Gaps = 9/214 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ FV ++S+E+R+P+  ++G T+LL T++L   + +Q  + E    S+  LL ++NDIL
Sbjct: 415 KSLFVANMSHEIRTPMNGVLGMTELLLTTEL---DDEQRDFAETARHSAQALLGILNDIL 471

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + +DAG + +      L+ +LNE+   +A +  E  I      +  L + +  D  RL
Sbjct: 472 DFSKIDAGKLDIETIDFDLHGVLNEISSLLALRAEEKGIEFICRVEPSLPARLRGDPGRL 531

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVS 744
            Q+   ++ NA+ F+  G  V+     D G+ +   F ++++G  IP +   ++F+ F  
Sbjct: 532 RQVLLNLVGNAIKFTDHGEVVVSVGVEDRGEPLRVRFEIRDSGIGIPAETLPALFSPFTQ 591

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                 RR  G GLGLSI +  + L GG + + S
Sbjct: 592 AEGSTSRRFGGTGLGLSISKRLVELMGGEIGVRS 625


>gi|78356567|ref|YP_388016.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218972|gb|ABB38321.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 544

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    E    A   K+ F+ ++S+ELR+PL  IIG TDLL  +  G       +Y+E 
Sbjct: 152 RELAMAKEEAELASRAKSQFLANMSHELRTPLNGIIGLTDLLLCAPAG---GDHREYLEM 208

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           +  +   LL +VN++LD+++++A  + L  +   L + + EVK+ +  +    N+   V 
Sbjct: 209 VKQAGQELLTIVNNLLDMSSIEACRLVLRETPFSLRESVGEVKRILEIQARWKNLDFAVF 268

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI---FSVKNN 726
             DG    FV D  RL QI S +L NA+ ++ KG  S  +  A    GD +   F V++ 
Sbjct: 269 FDDGIPDLFVGDAGRLKQILSNLLVNAIKYTDKGGVSLRVSSAPCTAGDTVRLCFYVQDT 328

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +  +++F  FV       ++  G GLGL+I        GG V  S   EG +  
Sbjct: 329 GVGIDPEKRETIFEPFVLGESFMTKKSGGAGLGLAISRELARKMGGDVHASRCAEGGSLF 388

Query: 785 NC 786
            C
Sbjct: 389 EC 390


>gi|86136730|ref|ZP_01055308.1| hypothetical protein MED193_13687 [Roseobacter sp. MED193]
 gi|85826054|gb|EAQ46251.1| hypothetical protein MED193_13687 [Roseobacter sp. MED193]
          Length = 518

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 161/381 (42%), Gaps = 18/381 (4%)

Query: 171 LDGIYS-ELAETTL--KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +DGI   +L  +TL  + K L   ++  +       + VW +   G + W N++Y     
Sbjct: 123 IDGITRVQLRRSTLEEQNKSLDQELTTLRAAVHQAPYPVWLQSDEGAVTWTNLAYDD--- 179

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
               + QK  G   + F E +   +    +  K    ++   +      Y I       G
Sbjct: 180 ----LSQKLRGRDAE-FSEPLFDNLDEPKSSGKAERISIPMPDTTKRLWYNISTTETEAG 234

Query: 288 EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               A+DV+     E+   + +    +    L++ +AIFD+NR L   N   ++L  +  
Sbjct: 235 WLCHAVDVNAVVDAEVAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALPA 294

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLH 401
            FL+  P+     + LR    +PE  N+ +W+  I  + +++    +++TW LP+G    
Sbjct: 295 GFLSARPTLMTFFDRLRDQRMMPEPKNYSSWRHQIEDLLEAAAEGRYQETWSLPSGSVYS 354

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           V    +P G   ++FE++T +V L  ++ + +++    +D + E +AVF  DG +  SN 
Sbjct: 355 VSGRPHPDGAIAFLFEDITAEVTLTRQFRSELEMGQSIMDQMGEAIAVFANDGTMTFSNE 414

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            + +LWK + +       I + A         +  W      +    D R      ++L 
Sbjct: 415 TYHALWKMDPDASFAKVSIMDAARIWQDTCTATPAWGEIRDFVAG-SDGRTPWWTQVQLR 473

Query: 522 SDSVLEYSIIPLPNAQTMLTF 542
             + L   +  + N  TM++F
Sbjct: 474 DGTPLLCKVTAIQNGATMVSF 494


>gi|239831437|ref|ZP_04679766.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
 gi|239823704|gb|EEQ95272.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
          Length = 610

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S KQ +Y   I  S   LL LVN +
Sbjct: 329 KGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLASEKQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   ++  T+   +        +     +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGNYSIDPQTLAFREAAEMCTAVMLPLAEKKGVAFCHRVGNGIGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740
            QI   +  NA+ F+  G  V + AAR   +      FSV + G  I PEDM +  + F 
Sbjct: 449 QQILLNLAGNAVKFTQSGGCVTIDAARVMAEGRAMLEFSVSDTGIGIEPEDMQRIGTPFV 508

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           R  +N  R Q  G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 509 RANNNYARAQ-EGSGLGLSVVKGLVELHQGTMQLKSCPGEGTVVTVRLP 556


>gi|229591212|ref|YP_002873331.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
 gi|229363078|emb|CAY50066.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
          Length = 917

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731
            L + V D  RL QI + ++SNA+ F+ +G+ V    I     D+     SV++ G  + 
Sbjct: 391 PL-ALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLS 449

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 450 SQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|212634459|ref|YP_002310984.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555943|gb|ACJ28397.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1192

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 13/261 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E ++IP+   + ML    + D  R    E  L    E   +  + K+ F+  +S+E+RS
Sbjct: 451 IELTLIPVQLGEEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSKAKSRFLATMSHEIRS 510

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++G  DLL  S+L   N +Q  Y      + T LL+ +NDILD + ++AG M L  
Sbjct: 511 PLNAVLGSVDLLLDSRL---NKEQRIYANTAKEAGTALLSTINDILDFSKIEAGQMLLEK 567

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
           S+     L+ +V Q ++ K  +  I +    +  +  S + D QRL Q+   ++ NA+ F
Sbjct: 568 SSFSAAKLVTQVLQILSPKAQDKGITLASFVNCNVPESLIGDGQRLRQVLQNLVDNAIKF 627

Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           SS G   +    L++ +       +V + G  I E+   ++F  F  V + H     G G
Sbjct: 628 SSGGCIAVEMWLLESQQGKAQLCCTVTDQGIGISEEAQLTLFKEFSQVHDEHNTNYSGTG 687

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I    I    G +++ S
Sbjct: 688 LGLAICAELITRMEGSIAVRS 708


>gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1]
          Length = 1522

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 126/240 (52%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T    AE  L    EA  KA++ K++F+ ++S+ELR+P+  I+G   LL+ +    L+
Sbjct: 746 DITQQREAENILKTAREAAEKANKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLD 802

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ+ Y     A++  LL L+NDILD + +++G M+L      ++ +L ++   +++ + 
Sbjct: 803 RKQADYAVKSEAATRTLLRLLNDILDFSKIESGKMELECIPFDIHIMLRDLAVILSSYLK 862

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI 720
              + +    D  L  FV  D  RL QI + +  NA+ F+  G  V+     A+D+    
Sbjct: 863 VKKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVIAQDSHQVT 922

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I  +  +S+F+ F        RR  G GLGL I + F+ L GG +++ S
Sbjct: 923 LHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTLES 982


>gi|187777059|ref|ZP_02993532.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC
           15579]
 gi|187773987|gb|EDU37789.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC
           15579]
          Length = 617

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQ 608
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I     +L   K  + NS  K+ Q
Sbjct: 340 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDA-NSYDKKEQ 397

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       NI 
Sbjct: 398 YIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNIN 457

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I   +D +      D  ++ +I   +LSNA+ F+  G  + +           SVK+ G 
Sbjct: 458 IIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNIYVNIKDCKDSITISVKDTGI 517

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IP+D  +++F RFV      R  + G G+GL +V+SF+N+H G++ I S
Sbjct: 518 GIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGNIDIQS 567


>gi|124268770|ref|YP_001022774.1| sensor histidine kinase/response regulator [Methylibium
           petroleiphilum PM1]
 gi|124261545|gb|ABM96539.1| sensor histidine kinase/response regulator [Methylibium
           petroleiphilum PM1]
          Length = 1153

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 10/263 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q  L    +    R + AL    E    A++ K  +V  +++ELR+PL +I+G+  +L
Sbjct: 667 NRQNQLLTREIDAHQRTDAALQAAKEVAESANQAKTRYVAGMTHELRTPLNSILGYAQIL 726

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              K G L++   + V  I  S   L+ L++ +LDLA ++AG ++L  + + L   L+E+
Sbjct: 727 L--KDGVLSAAPREAVHTIRRSGEHLMGLIDGLLDLARIEAGRLRLEPAALPLPAFLDEL 784

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + +  +     +       G++ ++V AD +RL QI   +LSNA+ F+ +G TV L   
Sbjct: 785 VRMVQPQAQAKRLAFVYTHSGRMPAWVHADAKRLRQILINLLSNAVRFTDEG-TVTLHVD 843

Query: 714 RDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769
                  F V + G  I P+D  + +F  F   A  G+RR   G GLGL+I     +L G
Sbjct: 844 CRREVVRFDVVDTGIGIAPQDQ-QRIFMPFERGAA-GRRRGEPGTGLGLTITALLTSLMG 901

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S+    +T + R+  +E
Sbjct: 902 GELGLVSAPGRGSTFSVRLYLRE 924


>gi|117925825|ref|YP_866442.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609581|gb|ABK45036.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 801

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F ++T   +    L +  EA   A++ K  F+  +S+E+R+P+  ++G  ++L+ S 
Sbjct: 376 LVIFQDLTHRKQESEELRQAKEAAEAANQAKGDFLAVMSHEIRTPMNVMLGMVEVLQES- 434

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+ +Q + +  +  +   LL L+N ILDL+ +DAG ++L    + L++L+ EV   +
Sbjct: 435 --TLDQEQQEQLHSVQKAGKNLLALINQILDLSKLDAGHLQLQPEALNLHELIKEVVGLV 492

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A    E N+ +    D  +  ++ AD  RL QI   +L NA+ F+ KGS  I  + RD  
Sbjct: 493 AVLASEKNLLLSHQIDTSVPQWILADELRLRQILFNLLGNAIKFTEKGSVNITLSMRDPQ 552

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                +++ G  +      ++F  F        RR  G GLGL++    + L  G + + 
Sbjct: 553 QLALVIRDTGIGVDPAHHHAIFEPFTQQDGTITRRFGGTGLGLTLSRRLVELMHGQIRMD 612

Query: 776 S 776
           S
Sbjct: 613 S 613


>gi|330897590|gb|EGH29009.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 761

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 362 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 419

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   + +I  +   LL L+N++LD+A ++AG + L    + L+ +L E    ++    
Sbjct: 420 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAA 477

Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K + +   ++G  VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 478 DANIELKPLPNLPDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAEQVTV 536

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ DEG
Sbjct: 537 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 596

Query: 781 VTTINCR 787
                CR
Sbjct: 597 -----CR 598


>gi|168702739|ref|ZP_02735016.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1573

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 15/226 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++ D  K+ F+  +++ELR+PL  +     +L+ S +G    +    +  +      L 
Sbjct: 1202 LQEQDRRKDEFLATLAHELRNPLAPVRNGVQILRLSGVGEAAGRT---LNMMDRQLGHLT 1258

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHENNIRIKVISDGKL 677
            +LV+D++D+A V +G + L    + L  +++      +Q++    HE  +R  V ++  L
Sbjct: 1259 HLVDDLMDVARVSSGKVVLRNDRVSLKAVVDAAVETSRQAVEAAGHEFVLR--VAAEPLL 1316

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                AD  RL+Q+ + +L+NA  ++ +G  ++L A RD GD + +V + G  IP DM   
Sbjct: 1317 --LSADHTRLVQVLANLLNNAAKYTPQGGRIVLSAQRDGGDAVVTVSDTGVGIPADMLPK 1374

Query: 738  VFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            VF  F    ++  R Q  G+G+GL++V+  + +HGG V   S   G
Sbjct: 1375 VFELFAQVGTSIERSQ-GGLGIGLTLVKRLVEMHGGTVRAESPGPG 1419


>gi|91790648|ref|YP_551600.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91699873|gb|ABE46702.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 799

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 3/225 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ D +K+ FV  VS+ELR+PLT+I G   L+     G L +     V   S +   L+
Sbjct: 302 LRRIDRMKSEFVSTVSHELRTPLTSIRGSLGLIAGGVAGELPAMAKSLVGIASNNCERLI 361

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILD   +++G M      + L  LL +   +      ++N+++ + +        
Sbjct: 362 RLINDILDSEKIESGKMHFELQQVELQPLLAQALAANEGFAGQHNVKLALDAPADAVRVS 421

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+ + +LSNA+ FS   S V ++  R  G     V ++G  I E+  K +F +
Sbjct: 422 VDSDRLTQVVTNLLSNAVKFSPPASCVHIRLLRSGGRVRVEVADSGPGILEEFRKRIFQK 481

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           F     +   Q+ G GLGL+I  + +   GG +  ++   GV T+
Sbjct: 482 FSQADTSDTRQKGGTGLGLNISRAIVEQMGGSMGFTTK-AGVGTV 525


>gi|134300476|ref|YP_001113972.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134053176|gb|ABO51147.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 467

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           +E + K+D++KN F+  +S+ELR+PLT+I G+ + L   +L     +  + +  I   + 
Sbjct: 234 SEEILKSDKMKNDFISSISHELRTPLTSIKGWGETLFGEELQD-REEVKEGLNIICKETD 292

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            ++ LV ++LD +   +G +KLN   I +N LL EV Q  A ++ +  I +    +  + 
Sbjct: 293 RMIGLVEELLDFSRFQSGRIKLNLEKININSLLTEVIQQYAIRVRQKKIEMPYQFNDSVP 352

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKS 737
               DR RL Q+F  +L NA+ F+     V +      G       N+G  I  ED+ + 
Sbjct: 353 EITGDRNRLKQVFINLLDNAVKFTPFCGKVQISTEYSEGTIKIDFVNSGEGIRSEDLPRV 412

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               + +NA+R    G GLGL+IV+  INLH G + I S
Sbjct: 413 TEKFYKANANRP---GSGLGLAIVKEIINLHQGDLHIES 448


>gi|330809931|ref|YP_004354393.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378039|gb|AEA69389.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1160

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 127/245 (51%), Gaps = 5/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L E+ E L+++ + K+ F+ ++S+ELR+PL + +  + LL  +   +L+ +Q ++ 
Sbjct: 469 AQIQLQERAEELQRSSKYKSEFLANMSHELRTPLNSSLILSKLLSENPQQNLSEEQVKFA 528

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--R 668
           E I ++   LLNL+NDILD++ V+AG +++      +  L+  ++        +  +   
Sbjct: 529 ESIYSAGNDLLNLINDILDISKVEAGKLEVRPENTSVQRLVEGLRDMFEPLAADKGLGFE 588

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++V+ D        DRQRL Q+   +LSNA+ F+ +G+  +  A +      F V+++G 
Sbjct: 589 VQVLPDAP-AMLYTDRQRLEQVIKNLLSNAVKFTEQGTVSLSVAGQPGSGIAFMVRDSGI 647

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D  +S+F  F        RR  G GLGLSI      L GG + +SS     +    
Sbjct: 648 GIAADQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLATLLGGSICVSSEPGQGSVFTL 707

Query: 787 RIPSK 791
            +P +
Sbjct: 708 VMPER 712


>gi|283850700|ref|ZP_06367987.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573943|gb|EFC21916.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 651

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 33/286 (11%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G + LL    L  S +PL    T +   +VT+       L    EA +  +  K+ F+ +
Sbjct: 70  GRVALLRRESLHESGLPL----TRVVLRDVTEHRAVLAELAAAREAAKAGERAKSHFLAN 125

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +++E+R+P+  I+G T+L   +K   L  KQ +Y+E    S+  LL ++NDI+D A ++ 
Sbjct: 126 ITHEIRTPMIGILGMTELTLATK---LTEKQREYLEMARHSAQSLLTVLNDIVDYARIEV 182

Query: 636 GIMKLNYSTIVLNDLLNE---VKQSIATKMHENNIRIKVISDGKLGS----FVADRQRLL 688
           G ++L  +   L   + E   V + +A K H       VI    +G+     V D  RL 
Sbjct: 183 GALELARTPFDLYATVEETISVFRPLAAKKH------LVIGYQFIGAVPQVLVGDASRLR 236

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRF 742
           QI   ++ NA+ F+  GS V+     D+G          +V++ G  IP D  +++F+ F
Sbjct: 237 QILINLVGNAVKFTDAGSVVLTITRADDGSERKAAQLHLAVRDTGIGIPRDKIQAIFDSF 296

Query: 743 ----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
               VS A R Q  G GLGL+IV   + + GG  S+  S+EG  +I
Sbjct: 297 TQADVSAARRYQ--GAGLGLAIVRHLVEMQGGLYSV-ESEEGQGSI 339


>gi|283852658|ref|ZP_06369924.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571949|gb|EFC19943.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1101

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEY 612
           AL    E   +A++ K+ F+  +S+E+R+P+  I+G T++ L+T     L  +Q  Y++ 
Sbjct: 580 ALRAAKEDADRANQAKSQFLAGMSHEIRTPMNAILGLTEVALRTE----LTEEQRDYLDT 635

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           +S S+  LLN++NDILD + ++A  M+L      L++LL    +++     E  +R+ + 
Sbjct: 636 VSDSARHLLNILNDILDFSKIEARQMELEAVDFDLHELLRSAIKTLGLGAREKGLRLALD 695

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVKNN 726
           I  G       D  ++ Q+   ++ NA+ F++ GS  +       A  + G  +F V + 
Sbjct: 696 IFPGLPRHVCGDPGKVRQVLVNLIGNAVKFTAAGSVTVRAGLAAGAVGEPGRLVFEVADT 755

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           G  I  DM + +F+ F    N+   Q  G GLGL+I      L GG +  +S+
Sbjct: 756 GIGIRPDMLEVIFDSFRQADNSTARQYGGTGLGLAISRELAGLMGGEIRAAST 808


>gi|254429940|ref|ZP_05043647.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196196109|gb|EDX91068.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 846

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 10/222 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R   + K  F+  +S+E+R+PL  +IG  +LL+ +     + +Q +Y+  I ++   L  
Sbjct: 343 RAESQAKGLFLARMSHEIRTPLNGVIGLAELLRET---DPSPRQQEYISLIDSAGRTLTA 399

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
           L+ND+LD A ++AG ++L      L  LL E  Q       +N   + +  D    S  V
Sbjct: 400 LINDVLDFAKIEAGKLELVEERFDLPTLLAECVQMFNLPASDNGTLVILDVDPHTPSDVV 459

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKS 737
            D  RL QI   ++ NA+ F+  G  V+    R +G     F F+V + G  + +D    
Sbjct: 460 GDAIRLRQILINLIGNAVKFTRNGRVVLSLVCRRHGGEVPLFTFAVTDTGIGLTQDEQTQ 519

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +F RF   +    RR  G GLGLSI    + L GG + + S+
Sbjct: 520 LFQRFTQASANTARRYGGTGLGLSISRELVGLMGGEIHVHSA 561


>gi|117926226|ref|YP_866843.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609982|gb|ABK45437.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1303

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 136/260 (52%), Gaps = 12/260 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKT 596
           +++ F +++   + E+ L     A  +A+  K+ F+ ++S+E+R+P+  I+G + L ++T
Sbjct: 534 SVVVFQDISVRKQQEQVLQGAVRAADQANRAKSDFLANMSHEIRTPMNAILGMSHLAIRT 593

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S     + +Q  Y++ I  ++  LL+++NDILD A V+AG M++      L+++L+ +  
Sbjct: 594 SN----DPRQRAYLQKIHGAAQSLLHIINDILDFAKVEAGKMEMEMVPFNLDEVLDTLAT 649

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714
             + K  E  + +       L    V D  RL QI   +  NA+ F+ +GS V+ ++  +
Sbjct: 650 LTSVKADEKGLALIFRRHLDLPQRVVGDALRLNQILLNLTGNAVKFTEQGSVVVNVEKVQ 709

Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
             GD I   FSV++ G  + E   + +F  F        RR  G GLGL+I +  +NL  
Sbjct: 710 QQGDQIVLRFSVQDTGIGMDESQIQQLFVAFEQADSSITRRYGGRGLGLAICKQLVNLMA 769

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +S+ S+ E  +     +P
Sbjct: 770 GELSVQSTPEVGSCFTFTVP 789


>gi|300866501|ref|ZP_07111191.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335458|emb|CBN56351.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 795

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 2/236 (0%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +N  L +A  +K+ F+  VS+ELR+P+  IIGF++LL   +   +NS+Q   V+ I  + 
Sbjct: 559 QNLQLLEAARLKSHFLSTVSHELRTPMNAIIGFSELLLRQRQPPINSQQIDMVQRILKNG 618

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+N+ILDL+ ++AG  +L      L +L+           +E  + + V      
Sbjct: 619 KNLLMLINNILDLSRIEAGRTELEIEEFDLTNLVLCTALDFGIIANEKILSMSVYIYLDN 678

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              V D+ RL Q+   +LSNA+ F+ +GS  I  +       +  +++ G  I E     
Sbjct: 679 PCIVNDKSRLRQVLVNLLSNAVKFTERGSIYIHVSELSADKLLIEIRDTGIGIAETQIPH 738

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F +F  V    + +  G GLGL+I  S +NL  G + + S     ++    +P +
Sbjct: 739 IFEKFRQVDQTTKRKYPGTGLGLAITASLVNLMKGKIKVESEVGKGSSFRLELPRQ 794


>gi|256840790|ref|ZP_05546298.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738062|gb|EEU51388.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 622

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 135/250 (54%), Gaps = 8/250 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ +    E +L E       AD++K+ ++  +S+E+R+PL  I GF++L+        +
Sbjct: 380 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 436

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y  + +++L++ +  S   ++ 
Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 495

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +++ +  +     F  D  RLLQ+ + +++NA+  + +GS  +  A + +    F V
Sbjct: 496 PGGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYAIQPDDQLRFYV 555

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I ++  K VF+RFV  N +     G+GLGL+I +  +   GG + ++S     +
Sbjct: 556 RDTGIGIDKEKLKDVFDRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 612

Query: 783 TINCRIPSKE 792
             +  +PS E
Sbjct: 613 EFSFILPSHE 622


>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 1102

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+ ++S+E+R+P+  +IG  +LL  ++L   NS+Q++YVE I++S+  LL ++
Sbjct: 425 ANMAKGVFLANMSHEIRTPMNGVIGMGELLMETRL---NSEQTEYVERINSSAQALLRVI 481

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + +DA  + L      L + +  V   I+    E  +    +    +  ++  D
Sbjct: 482 NDILDYSKIDADKLDLEVIEFNLRNTVEGVADVISVPAEEKGVEAACLIHHDVPLWLKGD 541

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             RL QI   +  NA+ F+ KG  V+++ + D+ D       F V+++G  IP D+ K++
Sbjct: 542 PGRLRQILMNLSGNAVKFTEKGE-VVIRVSLDSEDEETAVIRFEVRDSGIGIPPDVQKTL 600

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F  F        R+  G GLGL+I +    L GG + ++S +
Sbjct: 601 FTPFTQADSSTTRKHGGTGLGLAISKKLSELMGGEIGLTSEE 642


>gi|332528042|ref|ZP_08404075.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112615|gb|EGJ12408.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 521

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 114/225 (50%), Gaps = 4/225 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+ELR+PL  ++GF  LL++  +   +  Q + ++ I  +   LL ++ D+L
Sbjct: 297 KTEFLSRMSHELRTPLNAVLGFAQLLESDPVEPPSESQQRRIKLIREAGEHLLQMIGDLL 356

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           DL  +++G ++L  + + L  L  E    +A       + +  ++D   G+ V AD  RL
Sbjct: 357 DLTRIESGGIELRLAAVPLRPLAEEALAMVAGSAERAQVTL-ALADSAPGARVRADGTRL 415

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKSVFNRFV-SN 745
            Q+   +L+NA+ ++  G  V L+ A   G +   +V + G  I  D  + +F  F    
Sbjct: 416 RQVLLNLLTNAIKYNRAGGRVELEIAAPQGRWQPLAVHDTGIGIARDERERLFEPFYRGR 475

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           A RG+  G G+GL++ +  + L GG + + S     ++    +P+
Sbjct: 476 AVRGRVEGTGIGLALTQDLVVLMGGRIEVDSEPGRGSSFTVTLPA 520


>gi|317122192|ref|YP_004102195.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
 gi|315592172|gb|ADU51468.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
          Length = 490

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E LR++  ++ S +  +S+ELR+P+T I G  + L+   L       +++   I A +  
Sbjct: 243 EELRRSQTLRRSMLATISHELRTPVTVIRGLGEALRDG-LVEAGPGAARHAGQIVAEAER 301

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L++D+  LA ++ G + L +        L E   ++ T + E         D  LG 
Sbjct: 302 LGRLIDDLFQLAQIETGQLDLRFGRFAAGPWLEERATALETLVRERGAHWAARIDPSLGG 361

Query: 680 --FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCK 736
               AD  RL Q+   ++ NA   +  G  V L AA   G     V ++G  I P D+ +
Sbjct: 362 VWLEADPHRLAQVLGNLVDNAARHAGPGGHVTLTAAAVAGGVRVEVADDGPGIDPADLPR 421

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            VF  F       + RG GLGLSIV + +  HGG V ++S+
Sbjct: 422 -VFEPFYRGREAARSRGAGLGLSIVRALVEAHGGRVGVASA 461


>gi|261218576|ref|ZP_05932857.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M13/05/1]
 gi|261221784|ref|ZP_05936065.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti B1/94]
 gi|261315201|ref|ZP_05954398.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M163/99/10]
 gi|261317242|ref|ZP_05956439.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis B2/94]
 gi|261320575|ref|ZP_05959772.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M644/93/1]
 gi|261751910|ref|ZP_05995619.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 5 str. 513]
 gi|261754568|ref|ZP_05998277.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 3 str. 686]
 gi|265988281|ref|ZP_06100838.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M292/94/1]
 gi|265997748|ref|ZP_06110305.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M490/95/1]
 gi|260920368|gb|EEX87021.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti B1/94]
 gi|260923665|gb|EEX90233.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M13/05/1]
 gi|261293265|gb|EEX96761.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M644/93/1]
 gi|261296465|gb|EEX99961.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis B2/94]
 gi|261304227|gb|EEY07724.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M163/99/10]
 gi|261741663|gb|EEY29589.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 5 str. 513]
 gi|261744321|gb|EEY32247.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 3 str. 686]
 gi|262552216|gb|EEZ08206.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M490/95/1]
 gi|264660478|gb|EEZ30739.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M292/94/1]
          Length = 532

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 371

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 431 VRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 479


>gi|260172697|ref|ZP_05759109.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315920990|ref|ZP_07917230.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694865|gb|EFS31700.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 701

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 119/236 (50%), Gaps = 16/236 (6%)

Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L EKNE L        +AD++K  F+Q++S+E+R+PL  I+GF+ LL    L   + +
Sbjct: 457 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 516

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + ++   +  +S +L  LVNDILDL+ +++G   +N ++   N++   +  ++  +  E 
Sbjct: 517 KLEFSSLVQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 576

Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
              +K+    ++        D QRL Q+    L+NA   + KG   +  +  ++ D I F
Sbjct: 577 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEHPDRITF 633

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           SV + G  IP D   SVF RF       Q  G GLGL+I  +      G V +  S
Sbjct: 634 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 687


>gi|256840824|ref|ZP_05546332.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|301309911|ref|ZP_07215850.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|256738096|gb|EEU51422.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|300831485|gb|EFK62116.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 423

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 20/251 (7%)

Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P P A  +L  +  ++T+  + + AL +    +++AD++KN+F+ ++S+E+R+PL  I+G
Sbjct: 151 PDPGASPLLLVMLNDITEQRQDQLALMK----VQEADKMKNAFIANMSHEIRTPLNAIVG 206

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  L+  +   S   +Q +Y   I+ +  +LL L+NDILDL+ +++G +  N S + L D
Sbjct: 207 FAHLVTETTNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRD 263

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706
           +  E     + KM  +   + ++ +      V    D  R+ Q+   +LSNA+ F+SKG 
Sbjct: 264 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 320

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +     D   F+  SV + G  I E+  +SVF RFV      Q  G GLGL I +  +
Sbjct: 321 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 376

Query: 766 NLHGGHVSISS 776
              GG + + S
Sbjct: 377 EQLGGEIGVRS 387


>gi|296129123|ref|YP_003636373.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
 gi|296020938|gb|ADG74174.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
          Length = 589

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A  +K+ FV  VS+ELR+PLT+++G+ +LL       L  +Q +Y+  I  ++   L 
Sbjct: 358 REAARLKDQFVGLVSHELRTPLTSVLGYVELLLDGTE-ELTDEQREYLGIIDRNARRQLR 416

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+L  A VDAG   ++ + +  +  +       +     +   + +  D +     A
Sbjct: 417 LVSDLLLSAQVDAGTFAISPTDV--DAAVVARASLASAAPAADAAGVTLAGDLRPAPLRA 474

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  RL Q    ++SNA+ F+  G TV +     D+G  + +V + G  IP D   ++  R
Sbjct: 475 DPVRLGQAIDNLVSNALKFTPTGGTVRVSVEPGDDGGAVVAVSDTGIGIPPDELANLTER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F   S A R    GVGLGLSI  + +  HGG V I+S+    TT    +P++
Sbjct: 535 FYRASTATRRAIPGVGLGLSITRAVVEAHGGTVRIASTVGEGTTFTLVLPAR 586


>gi|121997170|ref|YP_001001957.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588575|gb|ABM61155.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 871

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 218/483 (45%), Gaps = 58/483 (12%)

Query: 345 FLATNPSNDELLEFL-------RSANKL-----PEQLNWKTWKENIFSVYKSSE---THK 389
           F   NP+  +LL F        R A+ L     P+   +   +  IF V +S E     +
Sbjct: 271 FTFLNPAARQLLGFASEEAALGREAHALTHHSRPDGTPYPLEECPIFRVLRSGEPLEAWQ 330

Query: 390 DTWHLPNGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           D +   +G+   V+V + P     GG    +  F++++ +  +E + + ++++    +DH
Sbjct: 331 DYFWRTDGRGFDVLVYAAPLRDVEGGITGIVLSFQDISRRRRIERERDQMLEI----LDH 386

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-------GTHIR-NIAATCSRYYNES 494
               +  F PD  +  +N     L+     ++         G   R  + A   R+   +
Sbjct: 387 HPHLIQRFLPDTTLLYANRMVAELFGIPPPQMDGRRWIEWLGPEAREQLEAFLCRFTRAA 446

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
               +  A++ +  ++R+ +Q T +   D   E  +I    +      +++T+ V AERA
Sbjct: 447 PVGTVQLAVLAATGEQRR-VQWTCQAFFD---EDGLI----SHFQAVGIDITEQVAAERA 498

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                    +AD  + +F+  VS++LR+PL  I GFTDLL+ ++   L  +Q +Y+    
Sbjct: 499 RA-------QADRDRRTFLAAVSHDLRTPLNAIYGFTDLLQATE---LTPQQREYLGLCR 548

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++S  LL L++ +LDL+ +++G + L+     L +++      +     E  +R+ V   
Sbjct: 549 SASEKLLALIDTLLDLSRMESGRLTLHDEPFELAEVVERQVAVLRAVAEEAGLRLTVREA 608

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
                +V  D  R  Q+   ++SNA+ F+  G  V+  A   +G    +V + G  I PE
Sbjct: 609 PGTPQWVRGDATRFGQVVHNLISNAIQFTEHGEVVLEVAPEGSGWLYVAVHDTGVGIAPE 668

Query: 733 DMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT-TINCRIP 789
           D  + +F  F   N    ++ G GLGL I +  + L GG + ++S   +G T     R+P
Sbjct: 669 DR-EHIFKAFAQGNPSFRRQPGNGLGLRICQELVRLMGGRLEMTSELGKGSTFYFTARLP 727

Query: 790 SKE 792
             E
Sbjct: 728 RVE 730


>gi|323704635|ref|ZP_08116213.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536097|gb|EGB25870.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 610

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 132/258 (51%), Gaps = 23/258 (8%)

Query: 523 DSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           D   + +I P+ N ++     +L F N+T+               ++ D+ K+ F+  +S
Sbjct: 345 DKYYDVTITPIKNYKSEISDILLVFHNITE--------------FKELDQAKDDFISIIS 390

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E ++PLT+I+  T ++   K+G +N KQ   +  I   S  L  LVN++++L  +++G 
Sbjct: 391 HEFKTPLTSIMMGTSMILEEKIGVINDKQRSTLVAIEEESEKLTELVNELIELTKIESGK 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
              N+    +  +     + +    +E  + +    D  +    AD +++  + + +++N
Sbjct: 451 EMYNFKCCSIFGIAQNTVKPLYNIANEKGVNLTNTIDEDMPGVYADPEKITWVLNNLITN 510

Query: 698 AMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           A+ ++  G  + + A+ D GDF+  SVK+ G+ IP++    +F++F  V N    + +G 
Sbjct: 511 ALKYTDAGDDITISASVD-GDFMQISVKDTGAGIPKEYKDKIFDKFFHVQNDDEFEIKGT 569

Query: 755 GLGLSIVESFINLHGGHV 772
           GLGL++V+  +  HGG V
Sbjct: 570 GLGLAVVKEIVEAHGGKV 587


>gi|289665498|ref|ZP_06487079.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 660

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 20/242 (8%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISA 615
           +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +   Q  Y  +  I++
Sbjct: 271 RNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPNYKGLSVIAS 325

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIRIK 670
           S+     L++D+LDL+++  G ++L   ++   DL+ +V+     Q +A +  +  + + 
Sbjct: 326 SARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQILELH 382

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V     L   + D  RL Q+   +LSNA+ F+     + +   RD+G  + SV ++G  I
Sbjct: 383 VPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVSDSGDGI 440

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787
             +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T   R
Sbjct: 441 AAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVR 500

Query: 788 IP 789
           +P
Sbjct: 501 LP 502


>gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 508

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 6/241 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   ++T+  + E  L    +A   AD  ++ F+  +S+E+R+P+  +IGFT LL+ + 
Sbjct: 106 ILLLRDITERKQDEHRLRAAKDAAVAADRAQSRFLAMMSHEIRTPMNGVIGFTQLLRDTP 165

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L   N +Q +YV+ I+ S   LL +++DILD + V AG ++L  +   L  L+ +  Q +
Sbjct: 166 L---NPRQMEYVDLITRSGQSLLVIIDDILDYSKVSAGHLQLERAPCELRRLIEQHIQLL 222

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            T   + NI I +  D  + S  + D  R+ QI S ++SNA+ F+  G   I        
Sbjct: 223 HTGARQKNITIDLHIDPLVPSLIIGDAVRIGQIVSNLVSNAIKFTHHGGVHIHLVPDGPR 282

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                V + G  IP +  + +F  F        RR  G GLGL I      L GG +++S
Sbjct: 283 CLALHVTDTGIGIPPEAHRRIFEPFSQADGSTTRRYGGTGLGLPITRLLCTLMGGTLTLS 342

Query: 776 S 776
           S
Sbjct: 343 S 343


>gi|219667341|ref|YP_002457776.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537601|gb|ACL19340.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 560

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L + +  K+ F+  +S+ELR+PLT+++ FTDLL       L  ++ Q ++YI 
Sbjct: 309 LEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKEL-KQERQNLKYIK 367

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A+S  LL L+N+ILDLA ++AG ++L    + + D++  +   IA    +  I  ++  D
Sbjct: 368 ANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGITWEISLD 427

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSSIP 731
            ++    AD ++L ++   ++ NA+ F+     V   +    RDN   +  V + G  IP
Sbjct: 428 PEVSLLRADPEKLRRVIENLVGNAIKFTPAEGRVEIEVKNGPRDNW-LMIRVIDTGIGIP 486

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + +F RF        R+  G GLGL++ +  ++LH G + + S     +T    +P
Sbjct: 487 PEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVSLHKGELWVESELNKGSTFVVLLP 546


>gi|332666257|ref|YP_004449045.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335071|gb|AEE52172.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 814

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 135/258 (52%), Gaps = 9/258 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+   +++T+    +  L    +   +A + + +F+ ++S+E+R+P+ +I+G T+LL  +
Sbjct: 288 TLGIHLDITEQKLLQVDLERTRQEAEQARDAEKAFLANISHEIRNPINSIVGMTNLLYDT 347

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+ +Q +YV  +  S+ +L  LV+D+LD++ ++ G M+         ++   + ++
Sbjct: 348 ---YLSEEQLEYVNTLKYSADLLHALVSDVLDISKIEQGKMEPQLEDFDFFEMAKAMCKT 404

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-- 714
              ++ +  I+ +  +S      F +D   + QI   +++NA  F+ +G+   L  A+  
Sbjct: 405 FEFRLSQRPIQFQCEVSPSVPQRFRSDSTFINQILINLMNNAFKFTEEGTISCLAEAKFI 464

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           D   +I F VK+ G  IP D    +F RF     A++ QR G GLGL I +  + L GG+
Sbjct: 465 DQQQWIEFIVKDTGIGIPPDRLPFIFERFNQAGKANKVQRDGTGLGLPITKQLVELLGGN 524

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S+    TT N  +P
Sbjct: 525 IKVQSTPGVGTTFNILLP 542


>gi|332560839|ref|ZP_08415157.1| multi-sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides WS8N]
 gi|332274637|gb|EGJ19953.1| multi-sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides WS8N]
          Length = 699

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + L  A+  K++F+  +S+ELR+PLT IIG+ +LL+ S+   L+ ++ Q V+ IS
Sbjct: 452 LATMGDKLDAANRAKSNFLSSMSHELRTPLTAIIGYAELLEASEGRKLDGERLQQVQAIS 511

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS- 673
            +   L+ LV+ +L+L+ ++   ++L  S++ L  L+ E             + +++I+ 
Sbjct: 512 TAGWTLVKLVDAVLELSRLEHRDLRLATSSMDLMPLIEEALGRARPDAERMRVTLRLIAP 571

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
           +  L S V+D   L +I  ++LSNA+ ++  G  V +    +  D +  S+++ G  IP 
Sbjct: 572 ETPLPSVVSDPALLRRILDQLLSNAVKYNLPGGLVEVSFGLEAPDTVDLSIRDTGPGIPT 631

Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D    VF  F    H  G   G G+G++I +    + G  +S+ S+    T    RIP
Sbjct: 632 DRQAEVFQAFQRLGHENGAISGAGIGMTIAQRLAEVSGCRLSLESTPGKGTVFLLRIP 689


>gi|317048907|ref|YP_004116555.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
           At-9b]
 gi|316950524|gb|ADU69999.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
           At-9b]
          Length = 950

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 128/252 (50%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  VR E++L E  +A  +A   K+ F+  VS+ELR+PL  IIG  DLL+T    
Sbjct: 443 VLVDVSARVRMEQSLQEMAQAAEQASASKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 499

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L       V  ++ SS++LL +++DILD + +++  +K+        +++N +  +  +
Sbjct: 500 ALPKGVDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVINHIVGNYLS 559

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    + + V  +  +  +   D  RL Q+ S +L+NA+ F+  G  +IL A    G  
Sbjct: 560 LVVRKRLALYVFIENDVPLALEGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYEHEGYL 618

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  IP      +F+ F       QR  +G GLGL+I E  IN+  G + + S 
Sbjct: 619 AFRVRDTGVGIPAKEVTRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSE 678

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 679 PGMGSQFVVRIP 690


>gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 968

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 18/293 (6%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKAD 566
           ++R  + G  +L  D +L     P  + +T+   +++    R  AE AL +  E    A+
Sbjct: 533 EDRNPISGRWQLNHDRIL-----PWFDGKTVRVQISLDIGQRKQAEEALKQSKEEAESAN 587

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K+ F+ ++S+E+R+PL  I+G   LLKT+     N +Q +Y+     S+  L  L++D
Sbjct: 588 KAKSVFLANMSHEIRTPLNGILGMLQLLKTT---DPNDEQKEYLLGAIRSTNRLTRLLSD 644

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685
           ILD++ ++AG M++  S   +  + + + +    +     + ++   D  L    V D  
Sbjct: 645 ILDISRIEAGKMQIVESEFDIKMIWDSISELFDMEARGKGLLLEFRWDNILPMLLVGDEA 704

Query: 686 RLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI   ++ NA+ F+ KG     ++++ +++  +   + +V + G  I E+  K +F 
Sbjct: 705 RLRQILFNLVGNAIKFTEKGKIRIDASLLPRSSDSSVRVLVTVSDTGIGISEEQLKDIFE 764

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            FV       RR  G GLGLSIV   + L  G +SI S+    TT    +P K
Sbjct: 765 PFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGTTFYLSLPFK 817


>gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
 gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 952

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 136/261 (52%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S+
Sbjct: 442 LCTLLDISMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQ 501

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+++QS+ ++ + + S  LL+++NDILDL+ V++G M L      +  LL E+  + 
Sbjct: 502 ---LSNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAY 558

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       ++ +  + +G    +  D  R+ QI S ++ NA+ F+ +G   +     KAA
Sbjct: 559 APLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAA 618

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           + +      V + G  I  D   ++F+ +        RR  G GLGL + +    + GG 
Sbjct: 619 QGDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGS 678

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S  +  TT+   +P +E
Sbjct: 679 IEVDSLPDFGTTVTVVLPLRE 699


>gi|150017917|ref|YP_001310171.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904382|gb|ABR35215.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 754

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + ++TD    E+ L EK E L        +A++ K+ F+ ++S+E+R+P+  I     LL
Sbjct: 346 YKDITDRKLIEKDLREKCEQLELLKQKAEEANKAKSIFLANISHEIRTPMNGITAAIQLL 405

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   L  +N KQ +Y+  ++ S+  +L L+N++LD++ +++G  ++N     L + +N +
Sbjct: 406 K---LEDINEKQKKYIRILNDSANTVLRLINNLLDMSKIESGTFRINREPFNLKETINNI 462

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVI 709
             S+    +   + +    D  +    + D  RL +I S ++SNA+ F+  G       +
Sbjct: 463 YNSLLVTGNSKGLEVSYYLDHNIDFEIIGDELRLKEILSNLISNAVKFTDDGYISFRVSM 522

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           +    D+    F++K++G  I ++    +FN F        ++  G GLGLSI + F NL
Sbjct: 523 ISEDSDSEKIQFTIKDSGIGIDDEFKDKIFNNFTQGNISSMKKYMGTGLGLSISKQFANL 582

Query: 768 HGGHVSISSS 777
             G +S  SS
Sbjct: 583 MNGEISFESS 592


>gi|306845191|ref|ZP_07477767.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO1]
 gi|306274350|gb|EFM56157.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO1]
          Length = 609

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 508 VRADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556


>gi|304393143|ref|ZP_07375071.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
            R2A130]
 gi|303294150|gb|EFL88522.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
            R2A130]
          Length = 1323

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 127/244 (52%), Gaps = 4/244 (1%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQ 608
            +AE  L     A   A+E+K  F+  +S+E+R+PL  IIGF++++   +LG + N +   
Sbjct: 1072 KAEEELLTTKAAAEGANELKTQFLAKISHEIRTPLNAIIGFSEMMIEERLGRIDNDRYRG 1131

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            Y+  I+ S   +L+LVND+LD+  ++AG M++++  + LN  ++E    +  + + + I 
Sbjct: 1132 YLRDINRSGAHVLDLVNDLLDITKIEAGKMEMDFDAVDLNRTVSENVAILQAEANADRII 1191

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727
            I+      +   VAD++ + QI   ++SN++ F+  G  VI+     D+G+ +  V++ G
Sbjct: 1192 IRTSLSTVVPKVVADQRSMRQIVLNLVSNSIKFTKSGGQVIVSTVYEDSGEVVLRVRDTG 1251

Query: 728  SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              +     +     F   ++A     +G GLGL + ++ +  +     I S+ +  T + 
Sbjct: 1252 VGMSASEMEQALQPFRQTASAAVSATKGTGLGLPLTKALVEANRADFHIESTPDEGTLVE 1311

Query: 786  CRIP 789
               P
Sbjct: 1312 IHFP 1315


>gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220]
 gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 419 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 478

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L +   + V  ++ SS++LL +++DILD + +++  +K+        ++++ +  +
Sbjct: 479 E---LPNGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITAN 535

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    D  +  +   D  RL Q+ S +LSNA+ F+  G  V+    + +
Sbjct: 536 YLPLVVRKQLGLYCFIDPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCD 593

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 594 GDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 653

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 654 VDSEPGMGSQFTLRIP 669


>gi|317152715|ref|YP_004120763.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942966|gb|ADU62017.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1228

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 133/266 (50%), Gaps = 14/266 (5%)

Query: 534  PNAQTMLTFV---NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            P A   LT+    +VTD  + E  L    E    A   K+ F+ ++S+E+R+PL  I+G 
Sbjct: 806  PMADKGLTYAIARDVTDRKKYEAELIAAKETAESATRAKSQFLANMSHEVRTPLNGILGM 865

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
              L++ ++   L+ +Q  YV     +S  L  L++DILD++ ++A  + +      L++ 
Sbjct: 866  LQLMQQTR---LDHEQDDYVGNAIQASRRLTRLLSDILDISRIEAEKLIIMAEPFNLHES 922

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG---- 705
            LN V+       +++ I  +     K+  + + D  RL Q+ S ++ NA+ F+S G    
Sbjct: 923  LNTVRDLFLPVANQSGIDFEFRVSPKIPTTLLGDAIRLQQVISNLVGNALKFTSSGTVTV 982

Query: 706  -STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
             +T +      +   +FS+K+ G  IP+D    +F  F  V ++   Q +G GLGLSI +
Sbjct: 983  EATTLSPLKPGSCRMLFSIKDTGCGIPDDRLGQLFQPFTQVDDSWNRQYQGAGLGLSITK 1042

Query: 763  SFINLHGGHVSISSSDEGVTTINCRI 788
              + L GG + I S     TT++  I
Sbjct: 1043 RLVALMGGTLCIESRVGVGTTVHLSI 1068


>gi|83415010|dbj|BAD80468.2| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 977

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 4/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613
           L +  E    A++ K++F+ ++S+ELR+PL  IIG+++++       +  ++       I
Sbjct: 464 LEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKI 523

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + +   LL L+N ILDL+ ++AG M+L   +  L +L+N VK  I   + +N  ++ V  
Sbjct: 524 NNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDC 583

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +G   AD  +L Q    +LSNA  F+ +G T+ L+ A      +F V ++G  +  +
Sbjct: 584 PADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVAAQGDQVVFKVVDSGIGMSPE 642

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F        R+  G GLGLSI   FI + GG +++ S     +T    +P +
Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQ 702


>gi|330967781|gb|EGH68041.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 775

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++    
Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 495

Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI ++ +     +LG  +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 496 DGNIELEELPHLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ +EG
Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEG 614

Query: 781 VTTINCR 787
                CR
Sbjct: 615 -----CR 616


>gi|289668325|ref|ZP_06489400.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 674

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 20/242 (8%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISA 615
           +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +   Q  Y  +  I++
Sbjct: 285 RNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGQPNYKGLSVIAS 339

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIRIK 670
           S+     L++D+LDL+++  G ++L   ++   DL+ +V+     Q +A +  +  + + 
Sbjct: 340 SARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQILELH 396

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V     L   + D  RL Q+   +LSNA+ F+     + +   RD+G  + SV ++G  I
Sbjct: 397 VPPTPCL--VLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVSDSGDGI 454

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787
             +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T   R
Sbjct: 455 AAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVR 514

Query: 788 IP 789
           +P
Sbjct: 515 LP 516


>gi|161528428|ref|YP_001582254.1| histidine kinase [Nitrosopumilus maritimus SCM1]
 gi|160339729|gb|ABX12816.1| histidine kinase [Nitrosopumilus maritimus SCM1]
          Length = 505

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 147/300 (49%), Gaps = 12/300 (4%)

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAER 553
           D WD      T F  E+  L+    L S   +  +IIP +    T+  F+    + R  +
Sbjct: 213 DAWDE----PTEFS-EKTLLKQVKNLKSLYFMYENIIPSIIGLATLAGFIVTMLAGRVSK 267

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             T+  E L + D+ K+  V  VS+E+++PLT II    LL T K G L  KQ   ++ I
Sbjct: 268 GETKIAE-LEEIDKQKDELVSMVSHEIKNPLTPIILACQLLLTEKEGPLTQKQKHRIKQI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S  +  L++D+ D+ T+D   M L    + ++ LL ++  ++   M E+   +  + 
Sbjct: 327 LVNSNQVTALLSDLSDIKTLDRNDMNLRKEDVNVDILLKKIIPNLK-DMVESRGAVLELK 385

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDF--SSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             K  +   D  R+ Q+ + I+ NA+DF  ++ G  VI     D+G  + S+++NG  IP
Sbjct: 386 VKKSKTISCDAARISQVVTNIVKNAVDFVPTTNGKIVISSDVTDDGQTLISIEDNGIGIP 445

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+  ++VF +F  +        +G GLGL+I +  +  HGG + ++    G    N  +P
Sbjct: 446 EEHHETVFEKFHQLDTPKDISHQGTGLGLAICKGIVESHGGKIWVAKDYTGGAKFNILLP 505


>gi|281356981|ref|ZP_06243471.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281316539|gb|EFB00563.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1816

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 9/248 (3%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            A  + T +++T+  + ++ LT      + A + K+ F+  +S+ELR+PL  +IGF++LL+
Sbjct: 1404 AYVLKTMLDITEFNQIQQKLTRAVLDAQNASKAKSYFLATMSHELRTPLNAVIGFSELLR 1463

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               L    S+Q++Y++ I+ +   LL L+NDILDL+ ++AG + +         L  E+ 
Sbjct: 1464 NDTLP--RSEQNEYLQSINFAGNALLKLINDILDLSKIEAGQIVITPERNDFQALCREIY 1521

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
                 +  E  +   +  D +L     D  RL QI   +  NAM F+  GS  I+   R 
Sbjct: 1522 SIFRLQAAEKKLEFTLECDPELPYLYLDNLRLRQILLNLTGNAMKFTKAGSIRIVIDFRP 1581

Query: 715  ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQR--RGVGLGLSIVESFINLH 768
               + G     V + G  I E   K++F  FV +   RG    +G GLGL+I    I   
Sbjct: 1582 ESDEAGTLTIRVIDTGIGISEQGQKTIFEPFVQDHEVRGSHAYQGTGLGLTISSRLIGQM 1641

Query: 769  GGHVSISS 776
            GG +++ S
Sbjct: 1642 GGRMALDS 1649


>gi|300867491|ref|ZP_07112142.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334485|emb|CBN57310.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1231

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 31/244 (12%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+   A+  K+ F+ ++S+ELR+PL  I+GF+ L+   +  SL+++  QY+  I+ S   
Sbjct: 738 ESADAANSAKSEFLANMSHELRTPLNAILGFSQLMNRDR--SLSTEYIQYLNIINRSGEH 795

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDIL+++ ++AG M L  +   L +LL+ ++  +  K     +++    D  +  
Sbjct: 796 LLELINDILEMSKIEAGRMVLYENEFDLYNLLDNLEDMLQLKAQSKALKLTFQRDKTVPK 855

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA---RDNGD---------------- 718
           FV  D+ +L QI   ++ NA+ F+ KG+ ++ +K A   R N +                
Sbjct: 856 FVKTDQSKLRQILINLIGNALKFTEKGNVILRVKVAGRERSNNEQKENTNIPSSFFLLPS 915

Query: 719 ---FIFSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                F V++ G  I PED  K    F +  +    GQ  G GLGL I + F+ L GG +
Sbjct: 916 SFFLQFEVEDTGPGIAPEDFDKLFEAFGQTATGLKSGQ--GTGLGLPISQKFVQLMGGEI 973

Query: 773 SISS 776
           ++SS
Sbjct: 974 TVSS 977


>gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Citrobacter koseri ATCC BAA-895]
 gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895]
          Length = 948

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 439 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 499 ---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITAN 555

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+    + +
Sbjct: 556 YLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCD 613

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S
Sbjct: 614 GDYLSIQVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIS 673

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    RIP
Sbjct: 674 VDSEPGMGSQFTLRIP 689


>gi|134100028|ref|YP_001105689.1| sensor histidine kinase/response regulator [Saccharopolyspora
            erythraea NRRL 2338]
 gi|133912651|emb|CAM02764.1| sensor histidine kinase/response regulator [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 1326

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 17/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L E+   L +A   K+ F+ ++S+ELR+PL + +    LL  +  G+L  +Q   
Sbjct: 860  QARQELEERAHELSQASTYKSDFLANMSHELRTPLNSALILAKLLADNMEGNLTPQQVDL 919

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I ++ T LL L+ND+LDL+ V+AG M L    + L++L   V+        +  +  
Sbjct: 920  AKTIHSAGTDLLQLINDVLDLSKVEAGHMSLLPEDVELSELTEHVESLYRPLTEDKGLEF 979

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-----------STVILKAARDNG 717
             V+    L  S   DR RL QI   +LSNA+ F+ KG           + V + A R   
Sbjct: 980  SVVLSPSLPPSLRTDRNRLEQILRNMLSNAVKFTDKGKVELRIRPAPATEVTVPALRSAA 1039

Query: 718  DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              + F+V++ G  IP D    +F  F        R+  G GLGLSI      L GG + +
Sbjct: 1040 RRVAFAVRDTGIGIPSDKLSRIFEAFQQLDGTTSRKYGGTGLGLSISRELTTLLGGELQV 1099

Query: 775  SSSDEGV-TTINCRIP 789
              SD GV +T    +P
Sbjct: 1100 -RSDVGVGSTFTLYLP 1114


>gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 587

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 33/342 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + EGV V   DG I L NPAFR ++      ++ G   + +   C     ++   DL A 
Sbjct: 255 MGEGVMVASADGAITLVNPAFRKMFA-----MTDGVEGKKLIEVCRNPDLQAAFHDL-AR 308

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLP----NAQTMLTFVNVTDSVRAERALTEK 558
                  E +   G + LL+  V      PL         +  F ++TD           
Sbjct: 309 CGGELSREIRIQPGDVTLLTHWV------PLAMDGAGQGVVAVFHDITD----------- 351

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASS 617
              ++  +E++  FV +VS+ELR+P++ I G+ + L++   L S     +++VE I   +
Sbjct: 352 ---MKHVEEMRRDFVANVSHELRTPVSVIKGYAETLMQNDMLVSEPEHATRFVEIIRRHA 408

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L+NDIL L+ ++A    L  + + +   + +    +A +  E  I +       L
Sbjct: 409 ERLTTLINDILTLSCLEARNSALELNAMDVGTTIAKSCALLAPRAAEKKICLHNEVGNNL 468

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              + D+ RL Q+   ++ NA+ ++ +G T+ L A +       SV+++G  IP      
Sbjct: 469 PRTLVDQGRLEQVLVNLIDNAVKYTPEGGTIRLFAEQGETFLRISVQDSGIGIPPRDLPR 528

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F RF  V      ++ G GLGL+I +  + LHGG ++++S+
Sbjct: 529 IFERFYRVDEGRSREQGGTGLGLAIAKHIVQLHGGELTVTST 570


>gi|81300625|ref|YP_400833.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
 gi|81169506|gb|ABB57846.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
          Length = 977

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 4/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613
           L +  E    A++ K++F+ ++S+ELR+PL  IIG+++++       +  ++       I
Sbjct: 464 LEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKI 523

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + +   LL L+N ILDL+ ++AG M+L   +  L +L+N VK  I   + +N  ++ V  
Sbjct: 524 NNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDC 583

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +G   AD  +L Q    +LSNA  F+ +G T+ L+ A      +F V ++G  +  +
Sbjct: 584 PADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVAAQGDQVVFKVVDSGIGMSPE 642

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F        R+  G GLGLSI   FI + GG +++ S     +T    +P +
Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQ 702


>gi|198282750|ref|YP_002219071.1| integral membrane sensor signal transduction histidine kinase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667905|ref|YP_002424945.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247271|gb|ACH82864.1| integral membrane sensor signal transduction histidine kinase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520118|gb|ACK80704.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 494

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 118/232 (50%), Gaps = 8/232 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R++      L++ + +++ F+  VS+EL +PL +    ++LL + ++G L  +Q + +E 
Sbjct: 250 RSIESMQTRLQEEERLRHEFLSQVSHELITPLASARSGSELLLSERIGPLLPRQREVLEI 309

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      L   + ++LD+  + A  +  +   I + D+L ++++ +     + N  +  +
Sbjct: 310 IVRQVKELYAAIQEMLDMHALQARSLDFSPQDIAVADVLLDLQKRMQPLTDKKNQILDCV 369

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               LG + AD QRL QI + ++SNA  +S  G  + ++A    G  +F V +NG  IP+
Sbjct: 370 GSEGLGVY-ADPQRLRQILTNLVSNAHKYSPAGGQIKVRATAQQGGTLFCVSDNGPGIPD 428

Query: 733 DMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            + + VF RF    VSN      RG GLGL+I    +   GG + + +   G
Sbjct: 429 ALLERVFERFYQVPVSNRL---PRGTGLGLAITRELVGAQGGWIRMHNRPGG 477


>gi|191637033|ref|YP_001986199.1| Sensor protein [Lactobacillus casei BL23]
 gi|190711335|emb|CAQ65341.1| Sensor protein [Lactobacillus casei BL23]
          Length = 396

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 120/231 (51%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S   +  +Y       +  +  
Sbjct: 148 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDHQYRS-EEELLKYTHTAYLKAKQMKV 206

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV D+ +   V +   KLN     +  +L ++  S   + H+ ++RI V  +       A
Sbjct: 207 LVEDLFEYTKVKSTTTKLNPVRFNMIAMLEQLAASFELEAHKKHMRILVSGEPDPLMMEA 266

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L ++F+ ++ NA+ +   G  + L A R   + +  V N+G+ IP D    +F+RF
Sbjct: 267 DTEKLGRVFNNLIVNALKYGQGGRHIFLDAQRIGSEVVVKVSNDGAQIPNDALSQLFDRF 326

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +   +  G GL L+I +S I LHGG++   SS E +T+    +P K
Sbjct: 327 YRVEESRSQETGGTGLELAIAQSIIALHGGYIYADSSPE-ITSFVIHLPLK 376


>gi|170078960|ref|YP_001735598.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169886629|gb|ACB00343.1| two-component hybrid sensor and regulator (His Kinase A domain
           protein) [Synechococcus sp. PCC 7002]
          Length = 372

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 8/249 (3%)

Query: 548 SVRAERALTEKNEALRKAD--EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           S R +  L   N  +R+ +  ++K  F+   S+E R+PLT+I+GFT+LL+          
Sbjct: 118 SDRKQVELDMHNALMREKELNQLKTRFIDIASHEFRTPLTSILGFTELLEQYAHKFNPEA 177

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HE 664
           Q ++++ I  ++  L  LV+D+L ++ VDAG + L  + +    L  ++ + +     H 
Sbjct: 178 QRRHLQRIKGAAQRLQTLVDDVLSVSRVDAGQLTLEPAPVHFEGLCQDIIEELQVVFGHT 237

Query: 665 NNIRIKVIS----DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + IR   +     D +L   V D + +  I S +LSNA+ +S  G  V L     +    
Sbjct: 238 HPIRFDFVPQYQGDRRLLP-VLDAKIIRHILSNLLSNALKYSFPGEAVSLVVCCGDRQIS 296

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            ++ + G  IP+     +F  F    + G+  G GLGL IV+ +I+LH G + ++S    
Sbjct: 297 ITITDRGIGIPQADLPHLFEPFHRAQNVGKIPGTGLGLHIVKRYIDLHNGTIMVASLVNS 356

Query: 781 VTTINCRIP 789
            TT   +IP
Sbjct: 357 GTTFRVKIP 365


>gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis
           Bt4]
 gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 987

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 136/261 (52%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S+
Sbjct: 477 LCTLLDISMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQ 536

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+++QS+ ++ + + S  LL+++NDILDL+ V++G M L      +  LL E+  + 
Sbjct: 537 ---LSNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAY 593

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       ++ +  + +G    +  D  R+ QI S ++ NA+ F+ +G   +     KAA
Sbjct: 594 APLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAA 653

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           + +      V + G  I  D   ++F+ +        RR  G GLGL + +    + GG 
Sbjct: 654 QGDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGS 713

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S  +  TT+   +P +E
Sbjct: 714 IEVDSLPDFGTTVTVVLPLRE 734


>gi|258516237|ref|YP_003192459.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779942|gb|ACV63836.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 496

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + EK  A+ + D+ +  FV +VS+ELR+PLT I G+T+ L          ++ QY+  + 
Sbjct: 253 IQEKITAIERLDQTRRDFVANVSHELRTPLTIIQGYTEAL-LDGFAETEEERQQYLNNVL 311

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L  LVND+LDL ++++G M L    + L  LL +V         +  + + + ++
Sbjct: 312 EESQRLQRLVNDVLDLRSLESGKMVLYKQKVDLTKLLAKVAGIFKPFYAQKQVFLSLSAE 371

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
               +  AD  RL Q+F  ++ NA+  +  G  V + +A +      +VK++G  I    
Sbjct: 372 EVWEAVYADPDRLEQVFVNLIDNALRHTPAGGEVKISSALETDKVFVTVKDSGPGISSKD 431

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++ RF  V  A      G GLGL+I ++ I+ HGG V ++S     T +   +P
Sbjct: 432 LPLIWERFYKVDKARSRGGEGSGLGLAITKAIIDAHGGWVEVTSEPGRGTVMTVCLP 488


>gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31]
 gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31]
          Length = 698

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 7/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  +   +A   K+ F+ ++S+E+R+PL  ++G   +++ S LGS      ++++ I 
Sbjct: 311 VVEARDRAERASLAKSQFLANMSHEIRTPLNGVLGMAQVMERSGLGS---PHREHLKIIR 367

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVIS 673
            S   LL ++ND+LDL+ ++AG  +L+     L + +    +  A    + ++  +K I+
Sbjct: 368 DSGETLLAILNDVLDLSKIEAGRFELDDHVFDLAETIGAACRPFALLARQKDVAFVKDIA 427

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              LG++  D  RL Q+ S + SNA+ F+ +G   +   A   G   F++ + G  I  D
Sbjct: 428 PDALGAWCGDSVRLRQVLSNLASNAVKFTHEGQIRLTVGATSEG-LTFTLTDTGIGIAPD 486

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              S+F +FV       RR  G GLGL+I    +   GG + + S+    +T   R+P
Sbjct: 487 RIASLFEKFVQADSSTTRRFGGTGLGLAISRELVERMGGTLRMDSAPGKGSTFVFRLP 544


>gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 631

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 139/257 (54%), Gaps = 12/257 (4%)

Query: 544 NVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++T  + +E AL +        NE L+  D++K+ F+ +VS+EL++PLT+I G+T+L+  
Sbjct: 375 DITTRIESEEALKKYAEELAIANEELKSLDQMKDRFLSNVSHELKTPLTSIKGYTELIYD 434

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             LG+L+ +Q +  + +  ++  L  LV+ +L ++   +G ++  +  + + +++    Q
Sbjct: 435 ESLGTLSEQQKEVEKTVLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSIVEIVEMTLQ 494

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  ++ E  + ++      + +   DR +L  + + ++ N++ F+ +G ++     ++ 
Sbjct: 495 DLKIQIEEKKLAVEKDIPNDIPTINGDRDKLTDMLTNMVDNSIKFTPEGGSLKF-TIKEE 553

Query: 717 GDFIFSV-KNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVS 773
            +FI  V K+NG  IP DM   +F RF   +A R ++  G GLGL I +  +  H G + 
Sbjct: 554 DEFIHIVLKDNGIGIPPDMIPMLFQRFYQIDASRTRKYGGTGLGLYICKEIVTAHKGKIW 613

Query: 774 ISSSDEGV-TTINCRIP 789
           + S  E   T ++ ++P
Sbjct: 614 VESKGENKGTEMHIQLP 630


>gi|305667709|ref|YP_003863996.1| two-component system sensor histidine kinase/response regulator
            [Maribacter sp. HTCC2170]
 gi|88709759|gb|EAR01992.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Maribacter sp. HTCC2170]
          Length = 1356

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 14/228 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASS 617
            L++ +++KNS   ++++E R+PLT I+G TD L++     LN+K +      VE I  + 
Sbjct: 838  LKEVNQLKNSLYDNITHEFRTPLTVILGMTDALESE----LNTKTTPPINNAVEMIRRNG 893

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL+LVN++LDL+ +++G ++ N + I +   +  + +S  +   E+ I   V S+   
Sbjct: 894  NNLLSLVNEMLDLSKLESGHLETNMAQINVVPFIKYLGESFQSFAQEDEIHFTVYSEVDE 953

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
                 D  +L  I S +LSNA+ F+     ++L    +N    I  V + G+ I +D   
Sbjct: 954  LMMDVDTTKLSTIISNLLSNAIKFTPALGKIVLHLHNENNTHLIIKVSDTGTGISKDELP 1013

Query: 737  SVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
             +FNRF    S   R +R G G+GL++ +  +NL GG +S++++ DEG
Sbjct: 1014 HIFNRFYQADSTVTR-KRDGTGIGLALTKELVNLLGGEISVTTAVDEG 1060


>gi|302342723|ref|YP_003807252.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301639336|gb|ADK84658.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 1336

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 10/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+     R L    E    A   K+ F+ ++S+E+R+P+  IIG T+L   + + SL 
Sbjct: 679 DVTERRHLTRQLQRAKEEAEAASRAKSDFLANMSHEIRTPMNAIIGMTNL---TLMTSLT 735

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q++++  + +++  L+ L+ DILDL+ ++A  + L      L DLL    + +A + H
Sbjct: 736 REQTEFLGTVKSAAESLMQLLGDILDLSKIEARQLALENVEFDLADLLEATLRDLAVRAH 795

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-D 718
              +  I  ++ G  G    D  RL QI   ++ NA+ F+  G  ++   L+A  DN  +
Sbjct: 796 GKGLELIGRMAPGAPGRLRGDPLRLRQILVNLVGNAIKFTDHGQVLVEARLEAMADNKLE 855

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV + G  I  +    VF+RF        RR  G GLG +I +    L GG + + S
Sbjct: 856 MRFSVVDTGVGIEPENIGRVFDRFTQADSSSTRRFGGTGLGAAISKELCELMGGRIWVES 915

Query: 777 S 777
           +
Sbjct: 916 T 916


>gi|229587665|ref|YP_002869784.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229359531|emb|CAY46372.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 595

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 154/353 (43%), Gaps = 23/353 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +D + +G+ +    GR++  NP  +     +E RL  G       A      +E     
Sbjct: 263 VLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEERLGQGLG----EALVRPELDEQLQLV 318

Query: 499 LFAAII-TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556
           L    +  + +D    ++G L LL+     YS+ P+ + Q  +L  V V   V  +RA  
Sbjct: 319 LRGGSLERAPEDLEVEVEGELRLLT-----YSLTPVSHTQGHILGAVMVLHDVTEQRAF- 372

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                    + +++ FV   S+ELR+P+T +     L +       +S+++  ++ ++  
Sbjct: 373 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLFRERAKFPPDSREADLLDTVNEE 423

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L+ L+ND+L+ +    G+ KL      + DLL   +       +  N+ + V +   
Sbjct: 424 MQRLMQLINDLLNFSRYQNGLQKLTLGPCDVTDLLEHARARFVEPANVQNVELMVEAQSD 483

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L    AD+ +L ++   +L NA+  +  G  + L+A R     I SV++NG  I      
Sbjct: 484 LPRLYADQAQLERVLDNLLGNALRHTPNGGQIRLQARRHGERVIISVEDNGEGIAYGQQG 543

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  FV    +  + G GLGL++ +  + LHGG + + S     T     +P
Sbjct: 544 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|254517110|ref|ZP_05129168.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3]
 gi|219674615|gb|EED30983.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3]
          Length = 1470

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 12/228 (5%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+E+R+P+  IIG TDLL    LG +LN  Q +Y E    S   LL+++NDILD 
Sbjct: 847  FLATMSHEIRTPMHGIIGMTDLL----LGTALNPPQRRYAETAKQSGENLLSIINDILDF 902

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
            + ++A  ++++  +  +N L++ V Q  +    + N+ +         S +  D +++ Q
Sbjct: 903  SKIEASKIEIDKHSFDINLLIDRVCQLQSVTAEKKNLGLLSYPVTNCSSEIYGDEKKIGQ 962

Query: 690  IFSKILSNAMDFSSKGSTVILKA--ARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSN 745
              + ++ NA+ F+S+G   +     A+   D++   SVK+ G  + E+    VF +F   
Sbjct: 963  CLTNLVGNAIKFTSEGRIQVTATVEAKGQDDWVLELSVKDEGIGMDEETQSRVFEQFTQA 1022

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 RR  G GLGLSI + FI L  G V + S+ +  TT+  +IP+K
Sbjct: 1023 DASTTRRFGGTGLGLSITKQFIELMNGEVILESAPQAGTTVTIKIPTK 1070


>gi|170751052|ref|YP_001757312.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657574|gb|ACB26629.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 630

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 5/226 (2%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVND 626
           IK  F+ +V++ELR+PL  IIGF+++L      SL   Q+ +Y   I AS   LL +VN 
Sbjct: 351 IKGRFLANVTHELRTPLNAIIGFSEVLAGEGAVSLGPVQAREYAGIIGASGHHLLGVVNT 410

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ + +G       T  + DLL      +  K     + +     G +    AD   
Sbjct: 411 LLDMSRIQSGNFDCAPETFDVADLLRGCCDLMRLKADAAGVALTAAPSGPV-EITADPAA 469

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--- 743
             Q+   ++SNA+ F+  G  + L   R  G     V + G  I  D    +   F    
Sbjct: 470 CRQVLINLISNAVKFTPSGGRIDLSLRRGAGSLDIVVADTGVGIGADDLPKLGTPFFQAG 529

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           S  ++ Q  G GLGLS+V+  + LHGG + I S+ +  T +   +P
Sbjct: 530 SGGYKRQHEGTGLGLSVVQGLVGLHGGSLLIESAPQAGTVVTVTLP 575


>gi|311693679|gb|ADP96552.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 957

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 124/229 (54%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  IIGFT+LL  S    L  +Q  ++  I  SS
Sbjct: 282 RKEAL-EASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS---PLPRQQRDHLSTIRKSS 337

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
            ILL ++NDILD + ++AG + L+     L D++ EV   +A   H  N+  + ++ +  
Sbjct: 338 EILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDV 397

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729
             + + D  R+ Q+ + +++NA+ F+  G  V+L+A+ +  +          S+ ++G  
Sbjct: 398 PDNIMGDPLRVKQVITNLVNNAIKFTQTGE-VVLRASLEEEEADTNRVTLRLSITDSGVG 456

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +     +S+FN F        R+  G GLGL+I +  +   GG + + S
Sbjct: 457 LSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLES 505


>gi|255013301|ref|ZP_05285427.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 423

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 20/251 (7%)

Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P P A  +L  +  ++T+  + + AL +    +++AD++KN+F+ ++S+E+R+PL  I+G
Sbjct: 151 PDPGASPLLLVMLNDITEQRQDQLALMK----VQEADKMKNAFIANMSHEIRTPLNAIVG 206

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  L+  +   S   +Q +Y   I+ +  +LL L+NDILDL+ +++G +  N S + L D
Sbjct: 207 FAHLVTETTNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRD 263

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706
           +  E     + KM  +   + ++ +      V    D  R+ Q+   +LSNA+ F+SKG 
Sbjct: 264 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 320

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +     D   F+  SV + G  I E+  +SVF RFV      Q  G GLGL I +  +
Sbjct: 321 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 376

Query: 766 NLHGGHVSISS 776
              GG + + S
Sbjct: 377 EQLGGEIGVRS 387


>gi|302877319|ref|YP_003845883.1| integral membrane sensor signal transduction histidine kinase
           [Gallionella capsiferriformans ES-2]
 gi|302580108|gb|ADL54119.1| integral membrane sensor signal transduction histidine kinase
           [Gallionella capsiferriformans ES-2]
          Length = 509

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 124/224 (55%), Gaps = 12/224 (5%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTI 619
           A   A   K+ F+ ++S+E+R+P+ +IIGF++L     L + + K  Q ++  I  SS +
Sbjct: 269 AAEAASRAKSDFLANMSHEIRTPMNSIIGFSEL----ALDNPDPKDQQIFLSQILESSNM 324

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++NDILDL+ +++G M L+ ++   ++LL  +++S A +  E  +   ++  G+ G 
Sbjct: 325 LLGILNDILDLSKIESGRMMLDVASFDFDELLGSIERSFALRAQEAGLGFTLLRLGESGR 384

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDM 734
            F+ D  RL QI + +L NA+ F+S+G T +    ++         FS+++ G  +  + 
Sbjct: 385 VFLGDVLRLRQILTILLGNAVKFTSQGETSLEVKQIRVPDGKVRLEFSIQDTGIGMSAET 444

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            K++F  FV   +   RR  G GLGL I  +   +  G +++ S
Sbjct: 445 IKNLFQPFVQADNSITRRFGGTGLGLVIARNLAQMMHGRITVES 488


>gi|86157538|ref|YP_464323.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774049|gb|ABC80886.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 463

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 12/236 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           E   A+R  D++    +  VS++L++PL  I +    LL+T     L     ++ E I  
Sbjct: 239 EAQRAIRARDDV----LAIVSHDLKNPLEAIYLSAALLLRTGAAPRLR----RHAETIQR 290

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  +  L+ ++LDL++++AG + +      L+ ++ E    ++    E  + +   + G
Sbjct: 291 SAARMDRLIRELLDLSSIEAGRLVVEPRPEPLDAVVEEALAGLSPLAQERGVALAADTAG 350

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  DR+R+LQ+ S ++ NA+ F+++G  V ++AA    +    V+++G  I     
Sbjct: 351 AREPVPCDRERILQVLSNLVGNALQFAARGGHVTVRAALAPAEARVEVRDDGPGIAPAQL 410

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + VF+R+  +   G RRG GLGLSI +  +  HGG + + S     +T    +P +
Sbjct: 411 RRVFDRYWKS---GSRRGSGLGLSIAKGIVEAHGGRIEVESQLGAGSTFRFTLPRR 463


>gi|265983704|ref|ZP_06096439.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. 83/13]
 gi|264662296|gb|EEZ32557.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. 83/13]
          Length = 532

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 371

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 431 VRADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 479


>gi|262166423|ref|ZP_06034160.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM223]
 gi|262026139|gb|EEY44807.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM223]
          Length = 785

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 129/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725
            +     L S V  D  RL Q+   ++SNAM F+ +G  V+  +A     + D    V++
Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQHADITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE+  + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEEEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|322419402|ref|YP_004198625.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125789|gb|ADW13349.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 771

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 7/239 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L++ D +K+ F+   S+ELR+PL  IIGFT +      G LN +Q   +  + 
Sbjct: 517 LERANVRLQELDRLKSMFIAATSHELRTPLNAIIGFTGMTLQGLSGELNEEQQDNLARVY 576

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL L+ DI+D++ ++AG + +      L +L++E    +  ++   ++ ++    
Sbjct: 577 RSAKHLLALITDIIDISKIEAGKISIFPEEFPLEELVDEAIAIVTPQLKGKSLSLERELP 636

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733
             L  + ADR+RLLQ    +LSNA  F+ KG  +I+ A    G    SVK++G  I P+D
Sbjct: 637 AALTVY-ADRKRLLQCLVNLLSNAAKFTEKGR-IIVAARESEGSIELSVKDSGIGIAPQD 694

Query: 734 MCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIP 789
           + +    F R  S+  R Q  G GLGL +    + ++  G +S+ S +   +T    +P
Sbjct: 695 LPRLFKPFERLESHL-RVQAGGTGLGLYLTAKLVADVLRGTISVQSREGEGSTFTLSLP 752


>gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
 gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
          Length = 558

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 325 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 381

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K  E  I ++V +  K  S
Sbjct: 382 MQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKTGEKEISLQV-NALKGVS 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 441 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 500

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 501 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|254418414|ref|ZP_05032138.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196184591|gb|EDX79567.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 647

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  I+G T  ++   L +L   Q + ++ ++ S   LL ++NDIL
Sbjct: 270 KSQFLAVMSHEIRTPMNGILGMTQAMQADPLPAL---QRERLDIVAESGAALLTILNDIL 326

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ V+AG M+L      L  LL  ++ + A+   +  + + +      G +  D  RL 
Sbjct: 327 DLSKVEAGKMELESVAFDLGILLGNLRSTYASTADDQGLILALDLGDAAGLYRGDPTRLR 386

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           QI S ++SN++ F+++G  + + A RD    + +V + G  +  ++   +FN F      
Sbjct: 387 QILSNLISNSLKFTARGR-IDIAARRDGQTLVLTVADTGVGMTTEVIARIFNPFAQADAS 445

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776
             R+  G GLGLSIV     L  G + + S
Sbjct: 446 TTRQFGGTGLGLSIVHELTRLMQGRIDVDS 475


>gi|158333667|ref|YP_001514839.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158303908|gb|ABW25525.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 768

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 10/244 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E    A++ K+ F+ ++S+E R+PL  I+GF+ LL   +   + S Q   +  
Sbjct: 295 RQLKEAIETTEIANQAKSRFIANMSHEFRTPLNGIMGFSQLLLQDR--RITSDQQSNLNV 352

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+LVN+++ L+ ++AG++      + L+ L   V+  ++ + +  +I+ ++ 
Sbjct: 353 ILRSGEHLLSLVNEVITLSKIEAGMLAYESKDVNLHHLCEGVEDLLSLQANSKDIQFQIH 412

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKN 725
               +  +V  D ++L QI   +L NA+ F+ +GS V           R   +  F +++
Sbjct: 413 IAPDVPQYVRTDAKKLRQILINLLGNALKFTKRGSVVCQVQWRPSAPERSAHELHFIIQD 472

Query: 726 NGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP  +   +F  F  +  +R    G+GLGL+I + FI+L  G +SI S +   TT+
Sbjct: 473 TGPGIPGHLLPQLFEPFAQDPLNRETFGGIGLGLTICQRFIHLMKGDISIESVEGQGTTV 532

Query: 785 NCRI 788
           +  I
Sbjct: 533 SFYI 536


>gi|330878543|gb|EGH12692.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 775

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++    
Sbjct: 438 --QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAA 495

Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI ++ +     +LG  +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 496 DGNIELEELPHLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ +EG
Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEG 614


>gi|271961978|ref|YP_003336174.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
 gi|270505153|gb|ACZ83431.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
          Length = 1392

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 121/256 (47%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A R L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L  +Q ++
Sbjct: 938  QARRTLEERAEQLAVSSRYKSEFLANMSHELRTPLNSLLVLAKLLTENAEGNLTVQQVEF 997

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  + + LL L+NDILDL+ V+AG M ++   I L  L++  + + A    +  +  
Sbjct: 998  ARTIHGAGSALLQLINDILDLSKVEAGRMDIHPQQISLPKLVDYFEATFAPLAQDKGLSF 1057

Query: 670  KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST--VILKAAR-----------D 715
             V  D  +      D QRL Q+   +LSNA+ F+ KG     ++ A R            
Sbjct: 1058 AVEVDSSVPQELRTDEQRLQQVLRNLLSNAIKFTPKGEVRLRVIHAQRAVAFVDDTLRGA 1117

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            +G   F V + G  I  D  + +F  F        R+  G GLGLSI      L GG + 
Sbjct: 1118 DGILAFEVVDTGIGIAADKLEVIFEAFRQADGTTSRKYGGTGLGLSICREIARLLGGEIH 1177

Query: 774  ISSSDEGVTTINCRIP 789
            + S     +T    +P
Sbjct: 1178 VVSEVGQGSTFTLYLP 1193


>gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1101

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 20/258 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+   AE  L         A + K+ F+ ++S+E+R+PL  I+G   L+ T++LG
Sbjct: 667 TLQDITERKTAEIELLNAKLRAEAASKAKSEFLANMSHEIRTPLNGILGMLQLMHTTRLG 726

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   +Q+ Y +    S   L  L++D+LDL+ +++G + + +    L   + +V +    
Sbjct: 727 A---EQADYADIAIQSGRRLARLLSDMLDLSRIESGKLDIRHVPFQLAAAVQQVVELFLP 783

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------- 710
              +  IR+ V  D     + + D  R+ Q+ + +L N+  F+  G   +          
Sbjct: 784 ISLQAGIRLDVRMDPTTPETLLGDIVRVQQVLTNLLGNSFKFTRIGGITLAVHRLPPPHA 843

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
            A R     +F++ + G  IPED    +F  F   SN  R   +G GLGLSI +  ++L 
Sbjct: 844 PACR----VLFTISDTGCGIPEDKLGELFEPFTQASNGMRRSHQGAGLGLSICKRLVHLM 899

Query: 769 GGHVSISSSDEGVTTINC 786
           GG ++I  S+EG  T  C
Sbjct: 900 GGEITI-ESEEGAGTTAC 916


>gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis
           TXDOH]
          Length = 926

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 136/261 (52%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S+
Sbjct: 416 LCTLLDISMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQ 475

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+++QS+ ++ + + S  LL+++NDILDL+ V++G M L      +  LL E+  + 
Sbjct: 476 ---LSNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAY 532

Query: 659 ATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       ++ +  + +G    +  D  R+ QI S ++ NA+ F+ +G   +     KAA
Sbjct: 533 APLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAA 592

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           + +      V + G  I  D   ++F+ +        RR  G GLGL + +    + GG 
Sbjct: 593 QGDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGS 652

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S  +  TT+   +P +E
Sbjct: 653 IEVDSLPDFGTTVTVVLPLRE 673


>gi|56752287|ref|YP_172988.1| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 937

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 4/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613
           L +  E    A++ K++F+ ++S+ELR+PL  IIG+++++       +  ++       I
Sbjct: 424 LEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKI 483

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + +   LL L+N ILDL+ ++AG M+L   +  L +L+N VK  I   + +N  ++ V  
Sbjct: 484 NNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDC 543

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +G   AD  +L Q    +LSNA  F+ +G T+ L+ A      +F V ++G  +  +
Sbjct: 544 PADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVAAQGDQVVFKVVDSGIGMSPE 602

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F        R+  G GLGLSI   FI + GG +++ S     +T    +P +
Sbjct: 603 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPRQ 662


>gi|15896466|ref|NP_349815.1| histidine kinase [Clostridium acetobutylicum ATCC 824]
 gi|15026292|gb|AAK81155.1|AE007818_1 Membrane associated histidine kinase with HAMP domain [Clostridium
           acetobutylicum ATCC 824]
 gi|325510624|gb|ADZ22260.1| Membrane associated histidine kinase with HAMP domain [Clostridium
           acetobutylicum EA 2018]
          Length = 475

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A+ K+++ +  F+ +VS+E+RSP+T+I GF   +    +     K+  Y+         L
Sbjct: 245 AIEKSEKNRREFISNVSHEIRSPITSIKGFIGGMLDGVIPK--EKERYYLSLTYDEINRL 302

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LVND+LDL++++AG +KLN + I +N+++        TK+ E  + + V  +      
Sbjct: 303 TRLVNDLLDLSSIEAGHLKLNLTKIDINEIIRFTVLKFETKIKEKKLNVDVCFNNDKVYV 362

Query: 681 VADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +AD+ R+ Q+ + ++ NA+ +  ++G   I    R N  +I ++ NNG  IPE+    ++
Sbjct: 363 IADKDRISQVVTNLIDNAVKYVYAEGEIKISTKERYNKAYI-TIYNNGPQIPEEDFNHIW 421

Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +RF  S+  R  +   GLGL IV S +  HG  +++ +  EG
Sbjct: 422 DRFYKSDKARTTKMSTGLGLPIVRSILTEHGQDINVINKKEG 463


>gi|298247274|ref|ZP_06971079.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297549933|gb|EFH83799.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 391

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 133/269 (49%), Gaps = 25/269 (9%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +  L   N   S  AE  L E N  L +AD +K+ F+   S+ELR+P+T I G+  LL
Sbjct: 126 NYRQQLLHANQEISQHAEE-LAESNTRLEQADRVKDQFLSMASHELRTPVTGIQGYVQLL 184

Query: 595 KTSKLGSLNSKQSQYVEYISASSTI---------LLNLVNDILDLATVDAGIMKLNYSTI 645
               L  L  +  Q  E++     +         L +LVND+LD+ T+ +G M ++    
Sbjct: 185 ----LHRLKKQSIQNPEWLPMYDALGKVDEQTRRLTDLVNDLLDINTLRSGKMPVHLEFC 240

Query: 646 VLNDLLNEV---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            L  L   V   +Q++  +    +I +++ +D    +   D +R  Q+ S ++SNA+ +S
Sbjct: 241 ELGCLCRRVVEEQQALVGR----SIDLRLPADPV--TVQVDNRRFSQVVSNLVSNALKYS 294

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSI 760
            K + ++++ ++  G+ I +V N    + ++  KS+F  F  +  A      G GLGL+I
Sbjct: 295 PKNTPILVEVSQRPGEAILAVHNESPVLTKEQQKSLFEPFYRSCEAQSPATPGWGLGLAI 354

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + LH G + + SS E  TT    +P
Sbjct: 355 CKEIVVLHNGRIWVESSAEKGTTFFVALP 383


>gi|254718728|ref|ZP_05180539.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. 83/13]
 gi|306838706|ref|ZP_07471541.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. NF 2653]
 gi|306406193|gb|EFM62437.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. NF 2653]
          Length = 609

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 508 VRADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 556


>gi|300864270|ref|ZP_07109150.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506]
 gi|300337735|emb|CBN54296.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506]
          Length = 1945

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A R+L EK E L    + K+ F+ ++S+ELR+PL +++    LL  +  G+L  KQ  Y
Sbjct: 1235 QARRSLEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSENTDGNLTLKQVDY 1294

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ T LL L+NDILDLA +++G M +    ++  DL + + ++      +  +  
Sbjct: 1295 TRTIYSAGTDLLGLINDILDLAKIESGTMSVEIEQVLFTDLRDHLDRTFRQVAQDKKLSF 1354

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--------- 718
             + +S         D +RL Q+   +LSNA  F+ +G   + ++ AR+            
Sbjct: 1355 LIELSGAVPKGLYTDAKRLQQVLKNLLSNAFKFTERGEVKLSVEVAREGWSLEIETLTNS 1414

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 FSV + G  I  +  + +F  F        R+  G GLGLSI     NL GG + 
Sbjct: 1415 ATVLAFSVSDTGIGISPEKHRVIFEAFQQADGSTSRKYGGTGLGLSISREIANLLGGEIQ 1474

Query: 774  ISSSDEGVTTINCRIP 789
            ++S     +T    +P
Sbjct: 1475 LTSRPGEGSTFTLYMP 1490


>gi|260777312|ref|ZP_05886206.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606978|gb|EEX33252.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 882

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 9/246 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L    E    A++ K+ F+ ++S+E+R+PL  I+G T++L  S+   LNS Q   + 
Sbjct: 371 ERDLVVAKENAEAANQAKSVFLANMSHEIRTPLNGIMGMTEILSDSR---LNSSQKDILS 427

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  LL L+NDILDL+ +++G + L+ S   + + + E    ++TK  +  + ++ 
Sbjct: 428 DIDVSSHALLVLINDILDLSKIESGNLTLSPSHADVREAVFEAMNMVSTKALKQQVELRA 487

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---SVKNNG 727
            +S     S   D  R  QI   +LSNA+ F+  GS  ++    + G+  +   SV + G
Sbjct: 488 TLSPDIPDSLYIDEFRFKQILMNLLSNAVKFTQDGSVSVVVKLMNEGEKAYLHCSVVDTG 547

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  + +F  F        RR  G GLGL+I      L GG ++ SS+    +  +
Sbjct: 548 VGINEEKLEEIFEPFTQEDGSITRRYGGTGLGLAICRQIAELMGGSITASSTPGLGSRFS 607

Query: 786 CRIPSK 791
             IP++
Sbjct: 608 FVIPAQ 613


>gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 636

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL    E+   A+  K+  +   S+E+R+PL  IIG + LL  + L   +++Q+ Y + 
Sbjct: 107 RALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPL---SAEQATYAKA 163

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL L +++LD A ++AG ++L+    VL+ L+ ++ + +A +     + I   
Sbjct: 164 VKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAAD 223

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI 730
            D +L  S + D  RL Q+   +  NA+ F+  G   ++    D  D +   V++ G  I
Sbjct: 224 IDERLPVSLIGDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSDGLRIIVRDTGIGI 283

Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             D    +F+ F   A  G  R   G GLGLSI +  +++ GG +++ S     +T    
Sbjct: 284 APDAQARIFHEF-EQADAGIARNFGGTGLGLSISDRIVSVMGGRIALESKPGEGSTFTIT 342

Query: 788 IP 789
           +P
Sbjct: 343 LP 344


>gi|262196966|ref|YP_003268175.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262080313|gb|ACY16282.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 798

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 15/223 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  +IG T+LL  ++   L+ +Q +Y E ++ +   LL L++D+L
Sbjct: 564 KSRFLNNMSHEMRTPLNAVIGMTELLIDTE---LDDEQREYAEVVTEAGVALLALIDDVL 620

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D+A +++G M L  +   L   +  V   +  +  E  +R    +++      + D  RL
Sbjct: 621 DVARIESGTMTLEEAPFSLRAAIGGVMSLLDARACEAGLRFASEVAEDVPDLLIGDAGRL 680

Query: 688 LQIFSKILSNAMDFSSKGST--VILKAARDN---GD----FIFSVKNNGSSIPEDMCKSV 738
            Q+   +++NA+ F+ +G     + +AA ++   GD      FSV++ G  +PED    +
Sbjct: 681 RQVLLNLVNNAIKFTEQGGVDLAVARAAEESEAPGDGSVVLRFSVRDTGIGVPEDKQAVI 740

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           F  F        RR  G GLGL I    + L GG +++ S  E
Sbjct: 741 FKVFEQADMSLSRRYGGTGLGLPIAVELVQLMGGELALESEPE 783


>gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 998

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 11/238 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L   N+ L +  E K+ F+  +S+E+R+P+  +IG  +LL+ +    L ++Q +YV  
Sbjct: 336 RELGVANDKLVQVTEAKSRFLSAMSHEIRTPMNGVIGMAELLEGT---DLTNQQGEYVSL 392

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I  S+  LL L+NDILD + ++AG + L +    L D+L +  Q++A + +E +I +   
Sbjct: 393 IIKSADTLLGLINDILDFSKIEAGRLDLEHIPFNLRDILGDTLQTLALRANEKDIELTFH 452

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNG 727
           I        + D  RL Q+   ++ NA+ F+  G   +   L++  D+    +F V+++G
Sbjct: 453 IPPDIPDKLIGDPLRLRQVIVNLVGNAIKFTEVGEVAVDLLLQSISDSDIQLVFEVRDSG 512

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             I +     VF  F     +   Q  G GLGL+I      + GG +++ S  +EG T
Sbjct: 513 IGISDAQQSKVFKAFDQADTSTTRQFGGTGLGLAIARQLTEMMGGTMAVRSKLNEGST 570


>gi|170744479|ref|YP_001773134.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168198753|gb|ACA20700.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1937

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 12/237 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A+ +L EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L+ KQ ++ 
Sbjct: 1230 AKISLEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENREGNLSDKQREFA 1289

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I+A+ + LL+L+NDILDL+ +++G + L    + L DL   + +S      E  +   
Sbjct: 1290 RTINAAGSDLLSLINDILDLSKIESGTVSLELGDVDLQDLAGHLDRSFRPLAEERQLAFT 1349

Query: 671  VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721
            +     L   V  D +RL Q+   +LSNA  F+ KGS V LK     G           F
Sbjct: 1350 IDVAPALPRLVRTDSKRLQQVLRNLLSNAFKFTEKGS-VALKLGSAEGSPLRAGSQWMAF 1408

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +V + G  IPED  + +F  F        R+  G GLGL+I      L GG + +SS
Sbjct: 1409 TVTDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVLSS 1465


>gi|241113448|ref|YP_002973283.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240861656|gb|ACS59322.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 2099

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 123/244 (50%), Gaps = 16/244 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ KQ ++
Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEF 1465

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I  + T LLNL++DILDL+ +++G + ++   I +++LL  + +    +    ++  
Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVSNLLEMMARPFRHEAENRDLSF 1525

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717
             V     +  S + D +RL QI   +LSNA  F+++G   +  A+  +G           
Sbjct: 1526 SVDVGADVAKSLITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASATSGWSSDHPSLKHA 1585

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F V + G  IP +  + +F  F        R+  G GLGL+I     NL GG + 
Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645

Query: 774  ISSS 777
            + S+
Sbjct: 1646 LRST 1649


>gi|95930432|ref|ZP_01313168.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133472|gb|EAT15135.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 679

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 127/234 (54%), Gaps = 13/234 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSK-QSQYVEYISASSTIL 620
           R+ D +KN F+   ++ELR+PLT ++G+T+LL    +   +  K Q++ +  I   +  L
Sbjct: 442 RELDRMKNEFISTAAHELRTPLTAVMGYTELLLHPEEFNVIEPKEQNRVLTTIYEKACRL 501

Query: 621 LNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
             +V D+LDL+ V +G ++ L+ ++  +N LL    +++    +  +  + +  D +   
Sbjct: 502 EGIVADLLDLSRVHSGCLIALSRASCDINSLLC---RAVGGYQYRQDFTVALELDSEEVV 558

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD ++L Q+   +LSNA+ FSS+   V ++  RD+  ++  V+++G  +     + VF
Sbjct: 559 LWADEKKLEQVMDNLLSNAVKFSSESCQVFVRGHRDDDVYVIEVEDHGIGMTPKQVERVF 618

Query: 740 NRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++F     S+   G   G+GLG+SIV++ +  H G + + S     T I  R+P
Sbjct: 619 DKFYRVDSSDTAPG---GLGLGMSIVKNIVEAHSGTIEVQSVPGQGTCITVRLP 669


>gi|21225508|ref|NP_631287.1| two-component system sensor kinase [Streptomyces coelicolor A3(2)]
 gi|8546942|emb|CAB94654.1| putative two-component system sensor kinase [Streptomyces
           coelicolor A3(2)]
          Length = 503

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +     F   VS+ELR+PL  +   TD+L     G L+   +  V  IS  +T L 
Sbjct: 258 LRRMEAGARRFAADVSHELRTPLAAMSAVTDVLDEDAAG-LDEDTATAVRLISTETTKLA 316

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV+D+++++  DAG   L+   I   DL   +++++AT+  ++ +   + + G+L   V
Sbjct: 317 ALVDDLMEVSRFDAGAAALHLDEI---DLAESLRRTLATRGWQDTVETGLPAPGELRGRV 373

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSV 738
            D +RL  I + +++NA+   +    + L A    R     + +V++ G  IPE +   V
Sbjct: 374 -DPRRLDVIVANLVANALRHGAPPVRLNLHAEDDPRAGRRAVVTVRDGGDGIPEAVLPHV 432

Query: 739 FNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  +A  R +  G GLGLSI    + LHGG V  ++  EG       +P
Sbjct: 433 FDRFYKSADARARSEGSGLGLSIATENVRLHGGTVRAANHPEGGAVFTVVLP 484


>gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB]
 gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 853

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 131/245 (53%), Gaps = 10/245 (4%)

Query: 540 LTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +TFV ++++  RAE+ L E  E   +A + K++F+ ++S+E+R+P+  I+G T L++   
Sbjct: 444 ITFVSDISERKRAEQELREAKELAEQATKAKSAFLANMSHEIRTPMNAILGSTYLMRR-- 501

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G  ++  ++ +E I AS   LL++++DILDL+ ++AG + L  + ++L  LL EV + +
Sbjct: 502 -GLTDAALNEPLERIEASGKHLLSIIDDILDLSKIEAGKLVLEEAPLMLPQLLGEVAEML 560

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG 717
             +  E N+ ++V S G   + + D  RL Q      +NA+ F+  G+ T+  +   +N 
Sbjct: 561 RGRAQEKNLAVRVESAGWPLNVLGDATRLRQALINYANNAIKFTDHGAITLRSRVIEEND 620

Query: 718 DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           + I     V++ G  I  +    +F  F        R+  G GLGL+I      L GG  
Sbjct: 621 ESILVRLEVEDTGIGISPEALGRLFTPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAA 680

Query: 773 SISSS 777
              SS
Sbjct: 681 GAESS 685


>gi|22095682|sp|Q9M7M1|ETR1_PRUPE RecName: Full=Ethylene receptor
 gi|6841075|gb|AAF28893.1|AF124527_1 ethylene receptor [Prunus persica]
          Length = 738

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L  +T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709
               + + ++ + + +D  + + V D +RL+QI   ++ NA+ FS +GS  I        
Sbjct: 432 PVASVKKLSVSLNLAADLPVQA-VGDEKRLMQIVLNVVGNAVKFSKEGSISITAFVAKSE 490

Query: 710 ----------LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
                       A  DN  ++   VK++GS I P+D+ K +F +F        R   G G
Sbjct: 491 SLRDFRAPEFFPAQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQSLATRNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGPG 574


>gi|254413405|ref|ZP_05027176.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180025|gb|EDX75018.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 689

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 130/243 (53%), Gaps = 17/243 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEYISA 615
           ++ D++K  F+  VS+ELR+PLT+++GFT ++K         ++ + N K  + V  +  
Sbjct: 196 KEVDQMKTDFISTVSHELRTPLTSVLGFTKIIKKKLEDVIFPQVQTDNKKIQRTVRQVKD 255

Query: 616 SSTILLN-------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + TI+++       L+ND+LD+A ++AG +  N   +++++++     + ++     +I+
Sbjct: 256 NVTIIVSEGERLTALINDVLDIAKMEAGKVDWNMQPLLVHEIIERAIAATSSLFETKHIQ 315

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
                + +L     D+ RL+Q+   ++SNA+ F+ KG T+  +A + + + I SV + G 
Sbjct: 316 FIKKVETELPEISGDKDRLIQVLINLISNAVKFTQKG-TITCRATQRHSEIIISVIDTGM 374

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I       VF +F  V +    + +G GLGL I +  +  HGG + + S  +  +T + 
Sbjct: 375 GIAPADQPQVFEKFKQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEFKKGSTFSF 434

Query: 787 RIP 789
            +P
Sbjct: 435 TLP 437


>gi|315039138|ref|YP_004032706.1| Sensor protein [Lactobacillus amylovorus GRL 1112]
 gi|312277271|gb|ADQ59911.1| Sensor protein [Lactobacillus amylovorus GRL 1112]
          Length = 384

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++ K+  + +VS+++R+PLT+IIG+  LLK+         Q +Y+      +  + +
Sbjct: 148 RVIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYINIAYTKAEQMKS 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ + +T+ +   KLN + + +  +L +V      +  +  I I++ +  K  +  A
Sbjct: 206 LANDLFEYSTLKSTNTKLNLARLHIYSMLEQVAAGFELEAEKKGIEIEIEARPKDLTIQA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++++ ++SNA  + +  + + L A   N   +   V+NNG  IP+D  K +F R
Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKREVELRVENNGEPIPKDSQKKIFER 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGLSI +S ++LH G +    SD+  T+   R+P
Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKSVVDLHHGTIR-CQSDKNWTSFIIRLP 374


>gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 944

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 123/236 (52%), Gaps = 9/236 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL------KTSKLGSLNSKQSQYVEYISAS 616
           R+ + +K+ F+  VS+ELR+PL++I G   L+        + LG     Q + +  IS +
Sbjct: 456 REIERLKDEFISIVSHELRTPLSSIQGSLQLVLGDDERGKTGLGDRLPPQVRTMLQISLN 515

Query: 617 STI-LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +T  L+ LVNDILD+  ++ G ++L    +    +     + + +   ++ + I +    
Sbjct: 516 NTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRSAVEELTSFARQHGVTIALDVPP 575

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L    AD+ R++Q+   +LSNA+ FSSKG  V+L    +     FSV++ G  IP    
Sbjct: 576 NLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVVYETSVVRFSVRDWGPGIPHTDQ 635

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +F +F  ++ A+  +R G GLGL+I +  + LHGG + + S     +  N  +P
Sbjct: 636 QFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGKIWVQSEPGQGSIFNFTLP 691


>gi|220908654|ref|YP_002483965.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865265|gb|ACL45604.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1433

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 12/257 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +++D  +AE  L +  E    A   K  F+  +S+E+R+P+  +IG T LL  +    L+
Sbjct: 862  DISDRKQAEAELLQAKETAEAATRAKGDFLATMSHEIRTPMNAVIGMTGLLLNT---PLS 918

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q QY E I  +   LL+++NDILD + +++G + L      L   + EV   +A +  
Sbjct: 919  PEQRQYGETIRNAGESLLSVINDILDFSRIESGHLDLEEHPFELPHCVAEVIDLLANRAV 978

Query: 664  ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--- 718
            E ++ ++V I  G     VAD  RL QI   +++NA+ F+ +G  +I +K+   + D   
Sbjct: 979  EKSLHLEVQIDPGVPAVIVADSARLRQILVNLVANALKFTDQGEVMIRVKSVAVSPDGQQ 1038

Query: 719  --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                FSV++ G  I     + +F  F        RR  G GLGL I +      GG + +
Sbjct: 1039 QTLEFSVQDTGIGIAPKQLEHLFQPFSQVDSSSTRRYGGSGLGLVISKRLCERMGGQIRV 1098

Query: 775  SSSDEGVTTINCRIPSK 791
             S     +T +  +P +
Sbjct: 1099 QSRAGVGSTFSFTLPVR 1115


>gi|170077312|ref|YP_001733950.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169884981|gb|ACA98694.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 774

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E   KA++ K+ F+ ++S+ELR+PL+ I+GFT+LL      +L S Q + ++ I+
Sbjct: 373 LQAAKEEAEKANQAKSQFLANMSHELRTPLSAILGFTELLTGDT--NLTSDQLESLDIIT 430

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LLNL+NDIL L+ ++AG   +      L + LN +   +     +  + +    D
Sbjct: 431 QSAQHLLNLINDILSLSKIEAGETSVLREAFNLVEALNVIYDFVVLAAKQKQLELIFERD 490

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIP 731
             +   +  D ++L Q+   +LSNA+ F+  G  V LK   D    +  F+V + G  IP
Sbjct: 491 ANVPEVIYLDEKKLKQVLINLLSNAIKFTEVGR-VTLKITYDAHQQNLHFAVIDTGPGIP 549

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           E     +F  F   S   R  R+G GLGL+I +  + L GG + +++++
Sbjct: 550 EHEQNKLFQVFQQTSTGIRS-RQGTGLGLAISQQLVQLMGGEIRVTTAE 597


>gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
 gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
          Length = 589

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 122/220 (55%), Gaps = 10/220 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  FV +VS+EL++P+T+I GFT+ L     G+++ +Q   Q++  I   S  
Sbjct: 353 LKKLEQVRKDFVANVSHELKTPVTSIKGFTETLLD---GAMHDEQLRDQFLHIIWKESER 409

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L++D+L+L+ ++    +LN+    L  +++EV   +  K  E  I I + ++G    
Sbjct: 410 LQSLIHDLLELSKIEQNYFQLNWQQTNLFAVVSEVMTLLKGKAEEKGIDISLSAEGSF-D 468

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
              D +RL QI   +++NA+ ++S G  + L A +D+GD + F V + G  I E     +
Sbjct: 469 LEGDPERLKQIAINLVNNAITYTSNGGRIDL-ALKDHGDVVEFEVNDTGIGIRESEIPRI 527

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F RF  V  A      G GLGL+IV+  +  H G + + S
Sbjct: 528 FERFYRVDRARSRNSGGTGLGLAIVKHLVEAHQGKILVES 567


>gi|90421839|ref|YP_530209.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90103853|gb|ABD85890.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 757

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 123/258 (47%), Gaps = 7/258 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+T     +VT     ERAL E  +    A+  K+ F+   S+E+R+PL  IIG + LL 
Sbjct: 201 AETQCVGRDVTARAETERALAEARDIADTANRAKSRFLAMASHEIRTPLNGIIGMSGLLL 260

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    L  +Q+ Y   +  S   L +L+ ++LD + ++AG + L      L+ L+ ++ 
Sbjct: 261 DTH---LTPEQATYARAVKTSGDALASLIEELLDYSKIEAGKIDLENRPFALSALIEDIT 317

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713
           + +A +    ++ I    D +L +  + D  RL Q+   +  NA+ F++ G   +I++  
Sbjct: 318 ELLAPRAQARHLEIAADVDERLPAEVIGDAARLRQVLLNLAGNAIKFTATGGVALIVEPG 377

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
              G+  F V++ G  I  +    +F  F        R   G GLGLSI +  +   GG 
Sbjct: 378 AMPGEIRFMVRDTGIGIAPEAQARIFREFEQADELIARNYGGTGLGLSISDRIVKRMGGQ 437

Query: 772 VSISSSDEGVTTINCRIP 789
           +++ S+    +T    +P
Sbjct: 438 ITLHSAQGTGSTFEFVVP 455


>gi|302556732|ref|ZP_07309074.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus
           Tu4000]
 gi|302474350|gb|EFL37443.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus
           Tu4000]
          Length = 643

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 4/244 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R+  A   + E L + D  K +F  H+S+ELR+PLT I+G    L+T +L   ++  +
Sbjct: 333 SARSYEAQQRRAEELAELDRAKTTFFSHISHELRTPLTLIMGPVAELRT-QLAGADACVT 391

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  +   L  LVN +LD + ++AG M+  Y  + L+    ++     + + +  +
Sbjct: 392 DELDVIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSRTTADLASVFRSAVEKAGL 451

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +V           DR    ++   +LSNA+ F+  GS  +   A D    + +V + G
Sbjct: 452 DFRVDCPQLPEPVYVDRGMWEKVILNLLSNALKFTFDGSIRVTVRAGDT-HAVVTVADTG 510

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +P      +F RF  V NA      G G+GL++V+  I LHGG ++  S++   T  +
Sbjct: 511 VGVPRQEMPRLFERFHRVENARSRSHEGSGIGLALVKELIALHGGTITADSTEGEGTRFD 570

Query: 786 CRIP 789
            R+P
Sbjct: 571 VRLP 574


>gi|300362909|ref|ZP_07059079.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
 gi|300352959|gb|EFJ68837.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
          Length = 381

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 131/234 (55%), Gaps = 8/234 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  LLK+S+   LN  Q++Y++     +  
Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQAKYIKIAHDKALQ 201

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +  L  D+ +  T+ +    KL  + + +N +L +V      +  + NI   V++  +  
Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNITFNVVTRPRDL 261

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
              AD + ++++ + ++SNA+ +    + + L A + N  F+   V+NNG  IP+   + 
Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNKFVELRVENNGEQIPKKSLQK 321

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V ++   +  G GLGL+I +S ++LHGG +   S+ E +T+   ++P
Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGTIKCQSTSE-LTSFIIQLP 374


>gi|224370342|ref|YP_002604506.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223693059|gb|ACN16342.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 873

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 123/237 (51%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E   AL ++  +K  F+ ++++ELR+PLT I G+ DL+   K+GS + K  + ++ I 
Sbjct: 237 LKESITALEESARVKKDFIANITHELRTPLTLIRGWADLVLDGKMGSDSEKLMETMDKIG 296

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             + IL   +N++L ++ +DAG++KL  +   +   + +   S    + ++ I +    D
Sbjct: 297 LQTLILTKKINELLKISRLDAGMVKLVLTKTDIGACIFQAVLSFKGLVEQSGIHLTYTGD 356

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +G    D+++L  I + ++ NA  F+ KG  +++   + +   + +VK+ G  +   +
Sbjct: 357 ASVGEVFIDQEKLKDILNNLIRNAYKFTEKGE-ILVSLLKKSDRLVITVKDTGIGMSSAV 415

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            KS+F RF        R+  G GLGL+IV+  + +  G +S+ S     T     +P
Sbjct: 416 LKSIFRRFHQGDSSTTRKYEGTGLGLAIVKDSVEMMNGTISVESMVGQGTVFTVDLP 472


>gi|159899882|ref|YP_001546129.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892921|gb|ABX06001.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 733

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 122/218 (55%), Gaps = 5/218 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LKTSKLGSLNSKQSQYVEYISASSTIL 620
           + A  +++ F+   S+EL++PLT ++G + L   +  +L  ++ +  + ++ I A ++ +
Sbjct: 497 QNAVRLRDVFLSIASHELKNPLTTLLGQSQLSLRRLERLNLVDERLQRSLQAIEAQASRM 556

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             +V  +LD++ ++ G + + +  I L  LL ++   +A  +  + +     S   +   
Sbjct: 557 NKMVTALLDVSRIETGQLDIQHDQIDLAQLLQQLVNDLAITIDHHQLSYHCTSSQPI-QV 615

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V D  RL Q+F  +++NAM +S + + V+++A R+    I  ++++G  IP +   ++F 
Sbjct: 616 VGDPIRLEQVFVNLINNAMKYSPEQTEVLVRADRNAQQAIVQIRDHGIGIPAESIPNLFT 675

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF   SNA R    G+G+GL +V+  ++LHGG + +SS
Sbjct: 676 RFYRASNAARSHVAGLGIGLFVVKEIVDLHGGSIEVSS 713


>gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 346

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 160/343 (46%), Gaps = 37/343 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + +GV V   DG I  +N A  SL+   E  L        +    ++     +  D+   
Sbjct: 17  MVDGVLVLNIDGCIIQANKAAESLFLVREGVL--------LGKRLTQISENREISDMIDE 68

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERAL 555
           ++T+ ++       T   +S S L + +  +P           ++ F +VTD+       
Sbjct: 69  VLTTGNE-----SFTETTISPSTLVFRVHAVPRKDHHERIEGAIVVFHDVTDA------- 116

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                  R  D+I+++FV +VS+ELR+PLT+I GF + L    + + ++ + +++  I  
Sbjct: 117 -------RNFDQIRSAFVGNVSHELRTPLTSIKGFVETLLDGAMENSDTCR-RFLSIIDT 168

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  L+ D+L L+++++    +      L   +  V      ++ E ++ ++ I   
Sbjct: 169 ETNRLTRLIEDLLTLSSIESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHVEFIHPY 228

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +    AD   L Q+F  +L NA+ ++ +   ++++  R +   I +VK++G  IP +  
Sbjct: 229 PMPLIQADEDLLGQVFINLLDNAIKYTPRQGKIVIQCQRRDSRIITTVKDSGMGIPHESL 288

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             VF RF  V  A   Q+ G GLGLSIV+  +  HGG V + S
Sbjct: 289 PRVFERFYRVDKARSRQQGGTGLGLSIVKHIVESHGGEVFVDS 331


>gi|116630288|ref|YP_815509.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC
           33323]
 gi|311110084|ref|ZP_07711481.1| sensor histidine kinase [Lactobacillus gasseri MV-22]
 gi|116095870|gb|ABJ61022.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC
           33323]
 gi|311065238|gb|EFQ45578.1| sensor histidine kinase [Lactobacillus gasseri MV-22]
          Length = 381

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 131/234 (55%), Gaps = 8/234 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  LLK+S+   LN  Q++Y++     +  
Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQAKYIKIAYDKALQ 201

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +  L  D+ +  T+ +    KL  + + +N +L +V      +  + NI   V++  +  
Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 261

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
              AD + ++++ + ++SNA+ +    + + L A + N  F+   V+NNG  IP+   + 
Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNKFVELRVENNGEQIPKKSLQK 321

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V ++   +  G GLGL+I +S ++LHGG +   S+ E +T+   ++P
Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGTIKCQSTSE-LTSFIIQLP 374


>gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 370

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 134/249 (53%), Gaps = 4/249 (1%)

Query: 531 IPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I L +   +L F  ++T   +AE  L           + K+  + +VS+ELR+PLT+IIG
Sbjct: 100 IDLDSEPVILGFCRDITTRKQAEENLIIAKLEAEATSQAKSELLANVSHELRTPLTSIIG 159

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+D++   K G LN+ Q  Y+  I  S   LL+L+ND+LDL+ +++G M+L+Y  I L +
Sbjct: 160 FSDIMLKGKAGKLNNNQINYLNKIHKSGQNLLDLINDLLDLSKIESGKMELHYEKISLTE 219

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++ ++   ++    E  + +    +  +     D  +L QI   ++ NA+ F++ GS   
Sbjct: 220 IIEDLMAKLSPLASEKGLTLDSKINPDIEYVCMDNIKLRQILYNLIYNAIKFTNNGSITT 279

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                DN ++ FSV + G  IPED    +F  F       +RR  G GLGL++V+  + +
Sbjct: 280 EVDFVDN-NYQFSVIDTGIGIPEDKQDEIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEI 338

Query: 768 HGGHVSISS 776
           HGG++ + S
Sbjct: 339 HGGYIEVES 347


>gi|238853709|ref|ZP_04644076.1| signal transduction histidine kinase [Lactobacillus gasseri 202-4]
 gi|238833645|gb|EEQ25915.1| signal transduction histidine kinase [Lactobacillus gasseri 202-4]
          Length = 381

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 131/234 (55%), Gaps = 8/234 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  LLK+S+   LN  Q++Y++     +  
Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQAKYIKIAYDKALQ 201

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +  L  D+ +  T+ +    KL  + + +N +L +V      +  + NI   V++  +  
Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNITFNVVTRPRDL 261

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
              AD + ++++ + ++SNA+ +    + + L A + N  F+   V+NNG  IP+   + 
Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNKFVELRVENNGEQIPKKSLQK 321

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V ++   +  G GLGL+I +S ++LHGG +   S+ E +T+   ++P
Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGTIKCQSTSE-LTSFIIQLP 374


>gi|163794580|ref|ZP_02188551.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180304|gb|EDP64827.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 860

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 163/371 (43%), Gaps = 29/371 (7%)

Query: 424 DLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           +LE +++ L K +     T  H   G+A  G DG+  + N  F  +   E + L      
Sbjct: 319 ELEHEHSALQKNERLLSATFHHAGVGIANIGLDGKFLMVNERFSKIVDHEPSSLL-SMSF 377

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERK-----------SLQGTLELLSDSVLEYS 529
            +I     R  +     DL   +  ++  E++            L G L    D   +Y 
Sbjct: 378 DDITHPEDRAASHEGVRDLLNGVRRTYVAEKRYIGSHGDIVWTQLTGALLTKEDGSPDYF 437

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I             +++D  RA+ +L        +A++ K+ F+  +S+E R+PL  I G
Sbjct: 438 IS---------VIEDISDRRRAQESLRLALVDAERANQAKSEFLATISHEFRTPLNAISG 488

Query: 590 FTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           F+++L     G L S K  +Y   I +SS  LL LVN  LDL++ +AG   L    + + 
Sbjct: 489 FSEMLACRYFGDLGSPKYEEYAHNIWSSSQHLLQLVNATLDLSSAEAGNPALTIEPVDIA 548

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++++  +S+  +     I   V          AD   + QI   +LSNA+  +  G ++
Sbjct: 549 EIVDDCVRSLTVEFERGGITTSVSVQPDRPPLHADAGAIRQILLNLLSNAVKATPPGGSI 608

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFI 765
            ++   ++   +  V + G  +PE +   + + F     NA+   R G GLGL+IV+S +
Sbjct: 609 SVRVEANSDKHVLVVSDTGMGVPEHLVDRMTDPFTVIGGNAYH-SRDGKGLGLAIVKSLV 667

Query: 766 NLHGGHVSISS 776
             H G + I S
Sbjct: 668 QRHRGDLRIES 678


>gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 834

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 14/244 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    E    A E K+ FV +VS+E+R+P+  I+G   L++ +    L+++Q+ ++ 
Sbjct: 205 EKELILAKEQAETASEAKSFFVANVSHEIRTPMNAILGMCYLMQRT---DLDARQTDFLN 261

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IK 670
            I+ ++  LL L+NDILD + ++AG +K+      L+ +L ++ Q  A K  E  +  I 
Sbjct: 262 RINVAAKSLLALINDILDFSKIEAGKLKIENRPFSLDGVLQQLAQMEAAKAAEKQLELIF 321

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFI--FSV 723
            +S         D  RL QI   +++NA+ F+ +G  V+      K A D G  +  FS+
Sbjct: 322 SVSQDVPQRLKGDPDRLGQILLNLVNNAIKFTERGKIVVTVRLYKKEAGDEGPVMLRFSI 381

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEG 780
           ++ G  I       +F  F     R  RR  G GLGL+I +  + L GG + + S+  +G
Sbjct: 382 RDTGVGIAPKNLSRLFAAFSQVDSRLSRRYEGTGLGLAICKQLVQLMGGKIWAKSTPGKG 441

Query: 781 VTTI 784
            T +
Sbjct: 442 STFV 445


>gi|312222273|emb|CBY02213.1| similar to two-component sensor protein histidine protein kinase
            [Leptosphaeria maculans]
          Length = 2472

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 16/243 (6%)

Query: 554  ALTEKNEALRK-ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            A+  +N  L++ A + K+ F+ +VS+ELR+PL  +IG ++LLK S    LN +Q+ Y + 
Sbjct: 1959 AIAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASP---LNGEQAGYADS 2015

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I   +  LL+++ND+LD + ++AG M +    + LN+ + EV +++A    E    +K I
Sbjct: 2016 IRVCADTLLSIINDLLDYSKLEAGKMNVMEMPLSLNETITEVVRALAYTNAERG--LKTI 2073

Query: 673  SDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKN 725
             +  L      + D  RL Q+   +LSN+  F+ +GS     V+ + A D  D   SV +
Sbjct: 2074 EELYLDPEMLVMGDPVRLHQVMMNLLSNSYKFTPRGSVTVRAVVDQEADDWVDITCSVID 2133

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSISSSDEGVT 782
             G  IPE+  K +F  F        R   G GLGLSI ++ I N+  G V + S     T
Sbjct: 2134 TGIGIPEEQKKKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGKVWLDSVPGKGT 2193

Query: 783  TIN 785
            T++
Sbjct: 2194 TVS 2196


>gi|288962966|ref|YP_003453260.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288915232|dbj|BAI76716.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1175

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 17/254 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T S RA   L +  E   +AD  K  F+  VS+E+R+PL  I+G   LL T   G L 
Sbjct: 635 DITASRRAREELRQAKERAERADAAKTEFLATVSHEMRTPLNGILGLCRLLLT---GRLE 691

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S + +Y   I      LL+ VNDILDL  ++ G ++L+ +   L  +L EV  ++    +
Sbjct: 692 SGERRYAMSIMRCGHGLLDQVNDILDLRKIEDGKLELDPAPCALLPVLEEVVATVEGLAN 751

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGD 718
           E  I + + I+       V DRQRL QI   ++ NA+ F+ +G       I  A   +G 
Sbjct: 752 EKGIGLGLDIAPAVPALVVVDRQRLRQILVNLVGNAVKFTERGGVDLRVDIETAPEHSGS 811

Query: 719 FI------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            +       +V++ G  +P D   ++F +         RR  G GLGL+IV   ++   G
Sbjct: 812 GMIGERLRLAVRDTGIGVPADRRAAIFEKLEQADSTIARRFGGSGLGLAIVRHLLDAMQG 871

Query: 771 HVSISSSDEGVTTI 784
            + + S  EG+ ++
Sbjct: 872 SIRVDSV-EGLGSV 884


>gi|284034896|ref|YP_003384827.1| histidine kinase [Kribbella flavida DSM 17836]
 gi|283814189|gb|ADB36028.1| histidine kinase [Kribbella flavida DSM 17836]
          Length = 618

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 7/244 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R   A     E++++ D  + + V  V++ELR+PL NI G+   L  S+ G +   + +
Sbjct: 379 ARLGHAFNAMAESIQQHDHQRKAMVSDVAHELRTPLANIKGY---LVASEDGVVPLDR-E 434

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  +   + +L  LV D+ DLA  DAG+++L+ +   L +L  +V  +         +R
Sbjct: 435 LVTSLLEETGLLERLVADLQDLALADAGMLRLHPAPRDLAELAGQVVAAHRPAAEAAGVR 494

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +D    + V D  R+ Q    ++SNA+ F+  G  V++   RD  D++ +V +NGS
Sbjct: 495 VSAAADSPAPAIV-DSARIRQALGNLVSNAIRFTPAGGHVVVGVRRDGDDYLLTVSDNGS 553

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +    +F+RF    H   R   G GLGL+I +  +  H G ++++S     +T   
Sbjct: 554 GIDAEHLPHLFDRFYRAEHSRSRATGGSGLGLAITKHLVEAHHGTITVTSHPGDGSTFTI 613

Query: 787 RIPS 790
           R+P 
Sbjct: 614 RLPG 617


>gi|170783492|ref|YP_001741985.1| putative signal transduction histidine kinase [Arthrobacter sp.
           AK-1]
 gi|150034979|gb|ABR66990.1| putative signal transduction histidine kinase [Arthrobacter sp.
           AK-1]
          Length = 644

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 6/239 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  RAERA  +      +A+  K+ F+  +S+ELR+PL  I+GF  LL+      L+
Sbjct: 252 DITDLKRAERAARDAMHEAERANRSKDEFLSRMSHELRTPLNAILGFAQLLQNLP---LS 308

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            + ++   +I  +   LL LVND+LD+  ++AG   +  + +   D +++  Q I     
Sbjct: 309 PEAAESAGHILDAGKHLLALVNDVLDITWIEAGAPGITTAAVPAIDPIHQALQLIRPLAS 368

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
            ++I I     G L  ++ AD QRL Q+F  +L NA+ F++    V +    +  DF+ F
Sbjct: 369 ASDIEIASDLHGALHRYILADTQRLRQVFLNLLGNAVKFNTAQGAVRVW-CEEKADFLRF 427

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            + + G  + E   + +F  FV  +   +  G GLGL++ +  +   GG + I  +  G
Sbjct: 428 FIMDTGPGMDESDAQRLFKPFVRLSQSAEVEGSGLGLALSKRLVQEMGGDLGIEHTAPG 486


>gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
 gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
          Length = 850

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A++ K+ F+ ++S+E+R+PL  ++G  DL   + +  LN++Q   +E   
Sbjct: 355 LNKSKEEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDL---TLMSDLNNEQRDNLETAK 411

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +    LL L+N+ILD + ++AG ++L  S+  L DLL +  +    K  E+N+ +     
Sbjct: 412 SCVDSLLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTVKPYKIKAKEHNVMVDYSIS 471

Query: 675 GKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFI-FSVKNNGSS 729
             L  + + D+ R+ Q+ + +LSNA+ F+  GS + LK      DN +FI F V + G  
Sbjct: 472 SDLPEYIIGDQLRIKQVLNNLLSNALKFTEAGS-INLKVDINTIDNDEFILFEVSDTGVG 530

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I ++  + +F  F  V N++  +  G GLGL+I +  I   GG + I S
Sbjct: 531 IADEDMEKLFKSFSQVDNSYTRKYNGTGLGLAISKRLIEKMGGSIWIKS 579


>gi|293368955|ref|ZP_06615556.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635975|gb|EFF54466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 534

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 15/243 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL  S 
Sbjct: 283 VITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               + K+ Q YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ ++
Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRN 398

Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714
              K    +  + V+    L +F    D++RL+Q+ +  ++NA+ F++KG  ++      
Sbjct: 399 YDIK---EDKPVPVLLAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKE 455

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           D  +  FSV + G  I  D    VF+RFV  N+     +G GLGLSI  S I   GG + 
Sbjct: 456 DTSEIEFSVADTGMGIEPDKVDRVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIG 512

Query: 774 ISS 776
           + S
Sbjct: 513 VES 515


>gi|158334015|ref|YP_001515187.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304256|gb|ABW25873.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 714

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 30/238 (12%)

Query: 563 RKA-DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           RKA + IK+ F+  VS+ELR+PLT+I G   LL T +LG L+    Q ++    ++  L+
Sbjct: 450 RKALERIKDEFISVVSHELRTPLTSIHGSIKLLATGQLGDLSDDGQQMLDIADQNTDRLV 509

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV+D+LDL  +++G  K++       DL+     ++ +  + + + +K  S   L    
Sbjct: 510 RLVSDVLDLQRIESGQAKISKHLCDAADLMTHATDAMRSMAYHHQVTLK--STPLLTMVW 567

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------ARDNG---------------- 717
           A+   ++Q  + ++SNA+ FS  G TV L A        A+D+                 
Sbjct: 568 ANPDYMVQTLTNLISNAIKFSQPGGTVELAAELRIEERRAKDSSSPPESHDTPFPITIKH 627

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +  F V + G  IP D  +SVF RF  V  +   ++ G GLGL+I    +  HGG +
Sbjct: 628 TELWFQVIDQGQGIPADKLESVFERFQQVDASDAREKGGTGLGLAICRKIVEQHGGKI 685


>gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
 gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
          Length = 1340

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L E+   L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ +Y
Sbjct: 886  QARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQNPTRNLSPKQVEY 945

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M ++   + L D++++V+ + +    E  +R 
Sbjct: 946  AHVIHSAGSDLLQLINDILDLSKVEAGKMDVHVEEVALVDIVDDVQATFSPITAEKGLRF 1005

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAARDNGDFI 720
             V     L + +  DR  + Q+   +LSNA+ F+ +GS  +                  +
Sbjct: 1006 TVAMAPDLPARLRTDRHLVAQVLRNLLSNAVKFTEQGSVDLAIAVSGAGAGGRAPGQAVL 1065

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            FSV + G  I  +  + +F  F        RR  G GLGLSI      L GG +   S  
Sbjct: 1066 FSVSDTGIGIAAENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVATLLGGEIQARSEF 1125

Query: 779  EGVTTINCRIP 789
               +T   ++P
Sbjct: 1126 GRGSTFTLQLP 1136


>gi|307329202|ref|ZP_07608367.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306885101|gb|EFN16122.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1851

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1339 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADGNLSPKQVEFA 1398

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1399 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1458

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1459 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPHAIREQLLEH 1518

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1519 GALRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1578

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1579 LLGGEIHAASEPGRGSTFTLYLP 1601


>gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
 gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
          Length = 571

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L++ ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 338 LKRLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 394

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    KLN  T+ +  +L ++   +  K  E  I ++V +  K  S
Sbjct: 395 MQGLIEDLLDLSKIEQQGFKLNMETVDMKGILEDIHMVLDNKAGEKEISLQV-NVLKRVS 453

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++ A D  +    V + G  I +D    +F
Sbjct: 454 VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIPRIF 513

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 514 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|78778121|ref|YP_394436.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
 gi|78498661|gb|ABB45201.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
          Length = 775

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  LT   +    A+  K+ F+ ++S+ELR+PL  IIGF+ +L+T +   +      Y+E
Sbjct: 403 EHKLTIFADKAESANRSKDMFLANMSHELRTPLNAIIGFSQILQTRE--EIPQNMRSYIE 460

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS +   LLNLVN ILD A ++AG +  +    +L+D+  E+   I+      NI + +
Sbjct: 461 KISIAGNNLLNLVNTILDFAKLEAGKISYHPRMTLLSDIAKEISIIISPLAEAKNITLTM 520

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSS 729
            +D  L  F+ D Q + Q    ILSNA+ F+     VI     D     ++ S+ +NG  
Sbjct: 521 PADISLALFI-DAQLMKQSLINILSNAIKFTPNDGEVIFSITFDKQRNQYVLSICDNGVG 579

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSS 777
           + ++    +F  F  + N  +   +G GLGL I +  + +LHGG + + SS
Sbjct: 580 MDKESISQLFTPFTQIDNHLQTASKGTGLGLVITKKIVEDLHGGKIWVESS 630


>gi|77459359|ref|YP_348866.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
 gi|77383362|gb|ABA74875.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
          Length = 291

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + E LR+A ++K+ F+ ++S+E R+PL +I+    LL     G L+ +Q + V ++S
Sbjct: 44  LDTQAEQLRQASDLKSRFLSYMSHEFRTPLGSILSINSLLADELDGPLSPEQHKQVAFVS 103

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  L ++V+D+LDLA ++AG + ++ +   + DL   ++      +    + +     
Sbjct: 104 TAARELSDMVDDLLDLAKIEAGRISISAAWFDMFDLFAALRGMFRPIVDATAVDLIFEEP 163

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D ++L QI    +SN++ F+++G   I       G   F+V + G  I  ++
Sbjct: 164 VGLPRLYTDDKKLAQILRNFISNSLKFTTRGEVRISARLEGEGKVRFAVSDTGIGIAAEL 223

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             ++F  F  V +  + + RG GLGLS+ + F  L GG V + S+
Sbjct: 224 HGTLFEDFSQVDSPLQKRLRGTGLGLSLCKRFAELLGGEVGVEST 268


>gi|153938174|ref|YP_001389703.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|170754692|ref|YP_001779988.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152934070|gb|ABS39568.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|169119904|gb|ACA43740.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|295317791|gb|ADF98168.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 615

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 123/231 (53%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++   F+ ++S+EL++PL  I     LL   +    + KQ +Y++ I  +   L+ 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEEDCNDEKQDKYLKLIKQNCYRLMK 415

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD   +D+G +KLN     + +L+ E+  S+ +      I I   ++ +      
Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741
           D  ++ +I   +LSNA+ F++ G  + +   +D+G+ ++  VK+ G  IP D  +S+F R
Sbjct: 476 DTDKIERIILNLLSNAIKFTNPGGNIFVN-VKDSGENVYVHVKDTGVGIPSDKLESIFER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  V    +  + G G+GL +V+SF+ +H G V I S     T    ++PS
Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLPS 585


>gi|302877993|ref|YP_003846557.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302580782|gb|ADL54793.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 604

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 8/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K+ F+   ++ELR+P+ +I G+++LL T +    + +Q +++  I   S +++++
Sbjct: 377 EVDRLKSEFLSTAAHELRTPMASIYGYSELLLTREFS--HDEQHEFLSTIYRQSELMISI 434

Query: 624 VNDILDLATVDA-GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +N++LD+A ++A G +    + I L DLLN +   IA     N  +           +VA
Sbjct: 435 INELLDIARIEARGSLDFTLTQIDLYDLLNNI---IAGCKPPNGRKCPQQPQRSTPLWVA 491

Query: 683 -DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
            DR++L Q  S +LSNA  +SS    +    +  +G  I   + + G  +  +    VF 
Sbjct: 492 GDRRKLTQAISNVLSNAYKYSSDEVGIEFLTSDLSGHLIGLRISDRGIGMTAEQLSHVFE 551

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF      G+  G GLG+SIV+  I LHGGH+ I S     T +   IP+
Sbjct: 552 RFYRADDSGKFPGTGLGMSIVQEIITLHGGHIDIESQSGTGTIVTLWIPA 601


>gi|224540544|ref|ZP_03681083.1| hypothetical protein BACCELL_05458 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517845|gb|EEF86950.1| hypothetical protein BACCELL_05458 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 465

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 124/237 (52%), Gaps = 16/237 (6%)

Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L EKNE L        ++D +K+ F+Q++S+E+R+PL  I+GF+ +L T  +   + ++ 
Sbjct: 218 LQEKNEELTVARDHAEESDRMKSFFIQNMSHEIRTPLNAIVGFSQVLSTPDIEVDDEEKE 277

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++   I  +S +L  L+ND+LDLA++++G  +++ +    N+L    + ++ + +H N  
Sbjct: 278 EFSMLIQQNSELLTTLINDVLDLASLESGKYRMHLAPHRCNEL---CQVAMVSVVHRNPK 334

Query: 668 RIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSV 723
           ++K      + +   FV D++RL Q+    L+NA   + +G   +  +  +N G   FSV
Sbjct: 335 KVKSYFTSDVPNDYLFVTDKERLQQVLINFLTNAEKHTERGEIHLHCSLTENPGKITFSV 394

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            + G  IP D    VF+RF       Q  G GLGL+I         G V +  +  G
Sbjct: 395 ADTGPGIPADQADCVFDRFSKLDEFKQ--GTGLGLNICSIIAGRLKGEVKLDKNYTG 449


>gi|150008002|ref|YP_001302745.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936426|gb|ABR43123.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 300

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 20/251 (7%)

Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P P A  +L  +  ++T+  + + AL +  EA    D++KN+F+ ++S+E+R+PL  I+G
Sbjct: 28  PDPGASPLLLVMLNDITEQRQDQLALMKVQEA----DKMKNAFIANMSHEIRTPLNAIVG 83

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  L+  +   S   +Q +Y   I+ +  +LL L+NDILDL+ +++G +  N S + L D
Sbjct: 84  FAHLVTETTNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRD 140

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706
           +  E     + KM  +   + ++ +      V    D  R+ Q+   +LSNA+ F+SKG 
Sbjct: 141 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 197

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +     D   F+  SV + G  I E+  +SVF RFV      Q  G GLGL I +  +
Sbjct: 198 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 253

Query: 766 NLHGGHVSISS 776
              GG + + S
Sbjct: 254 EQLGGEIGVRS 264


>gi|153806588|ref|ZP_01959256.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185]
 gi|149131265|gb|EDM22471.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185]
          Length = 660

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 9/245 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ LL  S   S   +  +Y 
Sbjct: 416 SEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLINSVEPS--EELQEYA 473

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNIRI 669
             I  +S +LL L++D+LD++ +++G ++ NY    ++    N +  +   K    ++R+
Sbjct: 474 NIIQTNSNLLLQLISDVLDVSRLESGKLQFNYEWCELVTHCQNMITLTNRNKTTNADVRL 533

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNG 727
           ++  +  +     D  RL QI   +L+NA+ F+  G ++ L    D      +FSV + G
Sbjct: 534 QMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYTVDKEKQCILFSVTDTG 591

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + IPED  + VF RF       Q  G GLGL+I +  I   GG + I    +G       
Sbjct: 592 TGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWIDKDYKGGARFIFS 649

Query: 788 IPSKE 792
            P KE
Sbjct: 650 HPIKE 654


>gi|37930220|gb|AAP76280.1| GacS [Pseudomonas sp. PCL1171]
          Length = 917

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   ++ +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MSPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731
            L + V D  RL QI + ++SNA+ F+ +G+ V    I     D+     SV++ G  + 
Sbjct: 391 PL-ALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLS 449

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 450 NQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|83310531|ref|YP_420795.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945372|dbj|BAE50236.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 631

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 125/254 (49%), Gaps = 19/254 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  L E  ++  +A   K+ F+  + +E+R+PL  ++G   LL  +    L+ +Q  + 
Sbjct: 132 GEEVLREARDSAEQAARAKSVFLAMMGHEIRTPLNGVLGMARLLLET---DLDPRQKSFA 188

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E + +S  +LL LVNDILD + +DA  M L      + D + EV+  +A++  E ++ + 
Sbjct: 189 ETLVSSGELLLGLVNDILDFSRLDAEGMTLAVEPFDVLDTVEEVRLVLASRAAEKDLALS 248

Query: 671 VISDGKLGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI-FS 722
                + G+ V      DR RL QI   ++ NA+ F+ +G   I     A + G  + FS
Sbjct: 249 C----RFGAGVRRVVSGDRLRLRQILFNLVGNAIKFTDRGGVEIGVEPLAVEQGQILRFS 304

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDE 779
           VK++G  I  ++   +F  F        RR  G GLGL+I +   +L GG +   S  D 
Sbjct: 305 VKDSGIGIAPEIGAQLFTEFWQGDSGAARRFDGAGLGLAICKRLTDLMGGVIGYDSLPDR 364

Query: 780 GVT-TINCRIPSKE 792
           G T  ++  +P  E
Sbjct: 365 GSTFRVDLPLPPAE 378


>gi|150018231|ref|YP_001310485.1| integral membrane sensor hybrid histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904696|gb|ABR35529.1| integral membrane sensor hybrid histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 748

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 121/222 (54%), Gaps = 11/222 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            KA+E K+ F+ ++S+E+R+PL  +IGF++LLK +     + K   Y+E I+ +   LL 
Sbjct: 436 EKANEAKSEFLANMSHEIRTPLNAVIGFSELLKNT---IKDEKHKSYIETINVAGNSLLT 492

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++NDILDL+ ++AG ++L Y  + L+++  E+K     K    NI   + I +    S +
Sbjct: 493 IINDILDLSKIEAGRIELQYKPLKLSNIFREIKYIFKQKTKSKNIEFLLDIQEDFDESIL 552

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA----RDNGDFIFSVKNNGSSIPEDMCK 736
            D  R+ QI   ++ NA+ F+ KG   + LK      + + DF  S+++ G  I E   +
Sbjct: 553 LDEVRIRQILLNLVGNAVKFTDKGYVKLSLKGTTSQNKSSVDFRISIEDTGIGIAEGERE 612

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F+ F   + +  ++  G GLGLSI +    +  G + + S
Sbjct: 613 KIFDAFKQASGQSIKKFGGTGLGLSITKKLTEIMQGKIFVES 654


>gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 879

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 370 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 429

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  ++ SS++LL +++DILD + +++  +K+        ++++ +  +
Sbjct: 430 E---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITAN 486

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L   RD+
Sbjct: 487 YLPLVVRKQLGLYCFIEPDVPVAMNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVQRDS 545

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S+
Sbjct: 546 DYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISV 605

Query: 775 SSSDEGVTTINCRIP 789
            S     +    RIP
Sbjct: 606 DSEPGMGSQFTVRIP 620


>gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
 gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
          Length = 1145

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 130/248 (52%), Gaps = 7/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  +A  A+  + + + +A   K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q
Sbjct: 454 DLEKANDAVRLQAQEVERASRYKSDFLANMSHELRTPLNSSLILAKLLADNADENLTAEQ 513

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN- 665
            ++ + I +S   LLNL+NDILDL+ ++AG ++++   + +N  ++ ++Q       +  
Sbjct: 514 VKFAQTIQSSGNDLLNLINDILDLSKIEAGHVEVSPEPVAINRTVDGLRQLFDPLAAQKG 573

Query: 666 -NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+ I+V  D  + S +  D QRL Q+   +L+NA+ F+++G   +L     +     SV
Sbjct: 574 LNLSIEVAPD--VPSVIETDPQRLEQVLKNLLANAVKFTAEGQVSLLVRPAGDAQIAISV 631

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I ED  +++F  F        R+  G GLGLSI    + L GG + + S     
Sbjct: 632 VDTGIGIAEDQQRNIFEAFHQADSTISRKFGGTGLGLSISRELVRLLGGRMHLQSRPGTG 691

Query: 782 TTINCRIP 789
           +T    IP
Sbjct: 692 STFTVIIP 699


>gi|134045335|ref|YP_001096821.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132662960|gb|ABO34606.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 639

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 134/243 (55%), Gaps = 8/243 (3%)

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M T +N++D      AE      NE L++ D +K+  +  VS+ELR+PLT+I G+ +L+ 
Sbjct: 381 MATQINISDEKLKKHAEELKASYNE-LKELDNLKSELIAIVSHELRTPLTSIKGYVELVL 439

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +G++N  Q + ++    +   L  L+  +LDL+ ++ G +++    + + +++ +V 
Sbjct: 440 DGTMGAINDSQRKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNICEIVGDVI 499

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           Q +     E NI++    + +  +  AD+ R+ Q+ + ++ NA+ FS    ++++    +
Sbjct: 500 QYLKPLATEKNIKLN--KNVEKITLEADKDRITQVLTNLIENAIKFSPANESILVNGTLE 557

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +      V ++G+ IP+   + VF+RF  V ++ + ++ G GLGL++ +S +  HGG + 
Sbjct: 558 DEGLHLKVTDHGAGIPKKDMEKVFDRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHGGSIW 617

Query: 774 ISS 776
           + S
Sbjct: 618 VES 620


>gi|299831229|gb|ADJ55757.1| hypothetical protein [Clostridium sporogenes]
          Length = 624

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 8/231 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI---IGFTDLLKTSKLGSLNSKQS 607
            E+ +   NE+ R+ +++   F+ ++S+EL++PL  I   +   DL K  K G+   K+ 
Sbjct: 347 VEKNIELLNES-REYNKLITDFLANISHELKTPLNVIFTAVQILDLYK--KDGNSYDKKE 403

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QY++ I  +   L+ L+N++LD   +D+G +KLN     + +L+ E+  S+       +I
Sbjct: 404 QYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLIEEITLSVVYYAESKDI 463

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            I   +D +      D  ++ +I   +LSNA+ F+  G  + +           SVK+ G
Sbjct: 464 NIIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNIYVNIKDCKDSITISVKDTG 523

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP+D  +++F RFV      R  + G G+GL +V+SF+N+H G + I S
Sbjct: 524 IGIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQS 574


>gi|29346857|ref|NP_810360.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338754|gb|AAO76554.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 785

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 137/268 (51%), Gaps = 13/268 (4%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +L  +  ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  
Sbjct: 384 ALVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNA 443

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL +++      ++  Y   I+ +S ILL L+NDILDL+ ++AG ++     + 
Sbjct: 444 IVGFSNLLPSAETL---EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMN 500

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSK 704
           L ++   + Q    ++ E    + +I D +    +   DR R+ Q+ +  L+NA  F+  
Sbjct: 501 LGEICRNIYQIHKDRVQEG---VTLILDNQDEDLIIEEDRNRIAQVITNFLTNAGKFTLS 557

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G  +      +N    F VK+ G  I  D    +F+RFV      Q  G GLGL+I    
Sbjct: 558 GE-IRFGFKVNNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSFAQ--GTGLGLAICRMI 614

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           I   GG + ++S     +T    IP KE
Sbjct: 615 IEKIGGEIGVTSEIGKGSTFYFTIPYKE 642


>gi|32473732|ref|NP_866726.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32444268|emb|CAD74266.1| probable sensory transduction histidine kinase [Rhodopirellula
           baltica SH 1]
          Length = 574

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +KNE L K        V +VS++LR+PLT I  +  +++   +G +N +Q++ +  I 
Sbjct: 203 LLQKNEKLEKLYATSQEIVDNVSHDLRTPLTVIKDYVAIIRDGLVGDVNQEQAEMLSKIL 262

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
             +  L  +V+D+LD + ++AG++ L+  TI L+ ++  V   +A + +   + +++  +
Sbjct: 263 GRADDLNGMVDDLLDKSKLEAGLLHLSRRTIGLDSIIQRVHMLVANRANTKQVSLQLEAA 322

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIP 731
           DG++  +  D +++ ++ + + +NA+ F  +G  V +  K + +  D +  V ++G  I 
Sbjct: 323 DGEIEVY-CDAEKITRVITNLATNAIKFVPQGGNVCIRTKLSSNGEDALVEVVDDGPGIE 381

Query: 732 EDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISS 776
               K +F RF   +H G  Q  GVGLGL+I +    L+ G + + S
Sbjct: 382 SAELKKIFGRFEQASHNGTKQNSGVGLGLNIAQKLATLNFGSIDVDS 428


>gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 137/291 (47%), Gaps = 34/291 (11%)

Query: 532 PLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKAD-------EIKNSFVQHVSYELR 581
           P+  A   L  V VTD     +AE  L   NE L KA+        +K+ F+ ++S+ELR
Sbjct: 513 PITIAGRTLNLVRVTDINERKQAEEKLLRTNEQLAKANAELARATRLKDEFLANMSHELR 572

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+G ++       G++N KQ++ +  I  S   LL L+NDILDL+ +++G ++L 
Sbjct: 573 TPLNAILGMSEGFIEGVFGAINQKQAKAIATIKRSGKHLLELINDILDLSKIESGKLELQ 632

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            S + +  + +     I     + NI +       L +   D +RL Q+   +LSNA+ F
Sbjct: 633 ISDVSVRSICDGSLTFIQQMALKKNICLSTHIGSNLDTIQVDDRRLRQVLINLLSNAVKF 692

Query: 702 SSKGSTV--------------------ILKAARDNGDFIFSVKNNGSSIP-EDMCK--SV 738
           + +G  V                    I +++  +    F V + G  I  ED+ K    
Sbjct: 693 TPEGGNVKLTVWLEEVGTNETLGAEKLISQSSIPSPHICFRVTDTGIGIASEDISKLFQP 752

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F +  S+ +R    G GLGL++V+    LHGG + ++S     +    RIP
Sbjct: 753 FTQLDSSLNRN-YTGTGLGLALVKRITTLHGGTILVNSEVGQGSCFTVRIP 802


>gi|223046625|gb|ACM79363.1| GAF sensor hybrid histidine kinase [Arthrospira platensis FACHB869]
          Length = 785

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+R L +K E L      K+ F+ ++S+ELR+PL +++  +  L  +  G+L+ +Q Q+ 
Sbjct: 98  AKRELEDKAEQLALTSRYKSEFLANMSHELRTPLNSLLILSRQLGENSAGNLDERQVQFA 157

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--R 668
           + I  + + LL L+N+ILDLA +++G M +N + +   D+   V++S      E  +  R
Sbjct: 158 QTIHQAGSDLLTLINEILDLAKIESGTMHVNPAELPFRDIKEYVERSFEHVADERGLWFR 217

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD-------NGDFI 720
           +++ +D    +   D  RL QI   +LSNA  F+  G  T+ ++ A D         D +
Sbjct: 218 VEIAADVP-ETIETDEMRLKQILRNLLSNAFKFTEHGGVTMRMRPATDPTRTTLLGADAV 276

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +V++ G  I  +  + +F  F        RR  G GLGLSI      L GG V + S 
Sbjct: 277 AIAVEDTGIGISPEQQRLIFEAFQQGDGGTARRYGGTGLGLSISRELARLLGGWVEVGSE 336

Query: 778 DEGVTTINCRIPSK 791
               +T    +P +
Sbjct: 337 MGKGSTFTLYLPRR 350


>gi|146291410|ref|YP_001181834.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|145563100|gb|ABP74035.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
          Length = 1196

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 124/254 (48%), Gaps = 8/254 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +++V+D V+    L E  E    A + K  F+  +S+E+R+P+  IIG  +L    K   
Sbjct: 680 WIDVSDRVKLMAQLREAKELADSASKAKTQFLATMSHEIRTPMNAIIGLLEL--AIKRSH 737

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N      +     S+  LL L+ DILD+  ++AG + LN + I L   ++   Q     
Sbjct: 738 ENQFDFNSIRVAHDSAKGLLALIGDILDIVKIEAGELTLNPTKIDLKQTISSTIQIFEGI 797

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DN 716
             E  + +K+I D KL  +V  D  RL QI S ++SNA+ F+++G   +    +    + 
Sbjct: 798 ALEKKLPLKLIFDHKLPQYVLLDPLRLKQILSNLISNAIKFTNQGMVTVSAEQQLELNEQ 857

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
              +  V + G  I +D  + +F  F    H    + G GLGL+I  S  ++ GG + + 
Sbjct: 858 MYLLLKVSDTGIGISKDDQQKLFRPFAQVQHGADNKGGTGLGLAICSSLCDMMGGELRMI 917

Query: 776 SSDEGVTTINCRIP 789
           S  E  TT++ R+P
Sbjct: 918 SEPEQGTTLSMRLP 931


>gi|251800212|ref|YP_003014943.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247547838|gb|ACT04857.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 614

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K ++ +  FV +VS+ELR+PLT I  + + L     G+L+ ++   ++V  I   +  ++
Sbjct: 378 KLEQSRRQFVANVSHELRTPLTTIKSYAEALND---GALDERELSERFVGVIRNETERMI 434

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+L L+ +D+    L      ++++L+EV    + ++ + +I   +I D  L S  
Sbjct: 435 RLVTDLLHLSRLDSNQAPLRRRKTNIHEMLDEVTDRFSFQLRQKSILATIIVDRDLKSAW 494

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            DR ++ Q+   ++SNA+ ++ +G  + L A  +D      SVK+ G  IP+     +F+
Sbjct: 495 LDRDQIDQVLDNLISNAIKYTLEGGAIELSAHKQDAATIAISVKDTGIGIPKKDLSRIFD 554

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A      G GLGLSI    +  HGG +S+ S     TT+   +P
Sbjct: 555 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGTISLKSELNDGTTVTFTLP 605


>gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1603

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 123/239 (51%), Gaps = 11/239 (4%)

Query: 549  VRAERALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            ++ ER   EK    NE L++ D++K+ F+ + S+ELR+PL  IIG ++ L   +   L+ 
Sbjct: 880  LQQEREQLEKERRMNERLQQVDKLKDQFLANTSHELRTPLQGIIGLSEALLEDE---LDP 936

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            ++   +  + +S   L +LVNDILD + +    ++L+   I L+ + + V ++I+  +  
Sbjct: 937  ERKANLTMVVSSGKRLNSLVNDILDFSKLKNADIELDLRPISLHSMADVVLKNISPLVAG 996

Query: 665  NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +I +         +  AD  RL QI   +L NA+ F+  G   I    RDN D +  V+
Sbjct: 997  KSIELLNSVSVDFPAASADENRLQQILYNLLGNAVKFTESGYIKIDALERDN-DLVVCVE 1055

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEG 780
            + G  IP D   ++F  F        R   G GLGLSI +  + LHGG + + S  D+G
Sbjct: 1056 DTGPGIPPDKRDAIFQEFTQGDASTTRAFSGTGLGLSISKRLVELHGGTMWLESEIDQG 1114


>gi|256004073|ref|ZP_05429058.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281419091|ref|ZP_06250108.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|255991996|gb|EEU02093.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281407240|gb|EFB37501.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 430

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 14/241 (5%)

Query: 552 ERALTEKNEALR----------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKL 599
           +R L EKNE +R          K+   K+ F  ++S+EL++PL+ I+G   L+  K    
Sbjct: 142 QRELEEKNELIRNLTSLYEKTIKSSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLD 201

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G+   K ++++  I  +   LL L+N+ILD++ +D+G +K N     +  L+ ++  S+ 
Sbjct: 202 GNDRRKSTRHLITIKQNCYRLLRLINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVI 261

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             + +  + ++  +  +      D  ++ +I   +LSNA+ F++ G  + +K A+     
Sbjct: 262 PYVEQKGLTLEFDTLEEEIITAVDVDKIERIILNLLSNAVKFTNPGGKITVKVAKKFNKV 321

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I  VK+ G  IP++M  ++F R+  V N    +  G G+GLSIV+SF+ LH G + + S 
Sbjct: 322 IIKVKDTGIGIPKNMQAAIFERYRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSK 381

Query: 778 D 778
           +
Sbjct: 382 E 382


>gi|24216361|ref|NP_713842.1| two-component hybrid sensor and regulator [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45656450|ref|YP_000536.1| histidine kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24197641|gb|AAN50860.1|AE011521_6 two-component hybrid sensor and regulator [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45599685|gb|AAS69173.1| histidine kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 696

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 10/231 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL EK+E  ++ ++ K  F+ ++S+E+R+P+T I+G T+LL  +    LN  Q   +E 
Sbjct: 308 QALKEKSEIAQQENQAKTVFISNISHEIRTPMTGILGITELLLNT---PLNPDQKDSLEL 364

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL +VN +LD +  D G ++L      + +LLN++   + T++ +N   + ++
Sbjct: 365 IQRSGDKLLKIVNHLLDFSKADTGKIELESIPFNMQELLNDLVSLLRTEILKNKNELNIL 424

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNG 727
                   +  D  R+ QI + ++SNA  F+ +G+      IL+       F   V + G
Sbjct: 425 FPPNFPKLLKGDPVRIGQILTNLVSNATKFTKEGTVEVGFHILEKTNSELSFRTWVFDTG 484

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             IP     SVF  FV +     R   G GLGLSI +  I L GG + + S
Sbjct: 485 IGIPPTKFNSVFEPFVQSDKSITRHFGGTGLGLSITKKLIELMGGKIHVES 535


>gi|329934373|ref|ZP_08284452.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329305969|gb|EGG49824.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 478

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 8/239 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYI 613
           L E    LR  +     F   VS+ELR+PL  +   T LL   +  G L  + S+ +  +
Sbjct: 244 LQEDAATLRAMEARARRFAADVSHELRTPLAAMTAVTGLLDDDAAAGHLGPETSEAITLV 303

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +  +  L +LV D+++++  DAG  +L+   I L +LL+   +++A +  ++ + + V  
Sbjct: 304 ADETRKLAHLVEDLMEISRFDAGAARLDLDEIDLGELLH---KTLALRHWQDRVTVDV-- 358

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            G L + + D +R+  + + +  NA+     G+ V ++A  +    + +V +NG  I ED
Sbjct: 359 PGGLRARL-DPRRIDVVLANLTGNALRHGGPGARVRIRARTEADRLVLTVHDNGPGIAED 417

Query: 734 MCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           M   VF+RF   +  R +  G GLGL+I      LHGG ++ ++S EG       +P +
Sbjct: 418 MLPHVFDRFTKGDTARTRSEGSGLGLAIAAENARLHGGTLTAANSTEGGAVFTLTLPRE 476


>gi|326800542|ref|YP_004318361.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
 gi|326551306|gb|ADZ79691.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
          Length = 850

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 11/259 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   ++  S R  R L    E        K  F+ ++S+ELR+PL +IIG+ + L+   
Sbjct: 327 LLILSDIRKSNRYRRELEIAKEEAEYHSAAKQRFLSNMSHELRTPLQSIIGYAEQLRDE- 385

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               + + S+ V  I  SS  LL +VN++LD   +++G    N     L+ L+ EV  ++
Sbjct: 386 ----HPEDSRKVNVIYQSSEHLLQIVNEVLDYNRINSGKFHFNNQDFYLSQLIEEVVAAM 441

Query: 659 ATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
             +  E ++ + +  + +  G    D  R+ QI   +LSNA+ F+ +GS T+++  A  N
Sbjct: 442 QLQAEEKSLSLNLSKEIEGTGYLFGDPFRIKQILYNLLSNAIKFTDQGSVTLMVSTAVKN 501

Query: 717 --GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +   +V++ G  IPE     +FN F    N++ G   G GLGLSIV++     GG++
Sbjct: 502 ELTELRITVEDTGKGIPESDIHRIFNEFEQAENSNSGTHFGSGLGLSIVKTLCEAMGGNI 561

Query: 773 SISSSDEGVTTINCRIPSK 791
            I S     +T +  IP K
Sbjct: 562 RIKSQLGKGSTFDVFIPLK 580


>gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 352

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 118/219 (53%), Gaps = 9/219 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           RK D++++ FV +VS+ELR+PLT I GF + L     G+L  K    +++  I   +  L
Sbjct: 123 RKFDQMRSEFVANVSHELRTPLTAIKGFVETLLD---GALEDKLICRRFLTIIEGENNRL 179

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L++D+L L+ +++   KL    + L   + +V   +  +  E  + +++I +  L   
Sbjct: 180 TRLIDDLLTLSAIESRERKLTLKPVCLVTSIIQVMNILGPQAREKRLHLELIFNRDLPPV 239

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVF 739
            AD   + Q+   ++ NA+ ++S G  ++++  R  GD +F S+ + G+ IP++    +F
Sbjct: 240 KADEDLVGQVLINLIDNAIKYTSPGGKIVIRVKR-GGDQVFTSITDTGTGIPQESLPRLF 298

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  V  A   +  G GLGL+IV+  +  HGG V + S
Sbjct: 299 ERFYRVDKARSRELGGTGLGLAIVKHIVESHGGEVFVES 337


>gi|253572318|ref|ZP_04849721.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838093|gb|EES66181.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 785

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 136/268 (50%), Gaps = 13/268 (4%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +L  +  ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  
Sbjct: 384 ALVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNA 443

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL +++      ++  Y   I+ +S ILL L+NDILDL+ ++AG ++     + 
Sbjct: 444 IVGFSNLLPSAETL---EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMN 500

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSK 704
           L ++   + Q    ++ E    + +I D +    +   DR R+ Q+ +  L+NA  F+  
Sbjct: 501 LGEVCRNIYQIHKDRVQEG---VTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLS 557

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G  +      DN    F VK+ G  I  D    +F+RFV      Q  G GLGL+I    
Sbjct: 558 GE-IRFGFKVDNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSFAQ--GTGLGLAICRMI 614

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           I   GG +  +S     +T    IP KE
Sbjct: 615 IEKIGGEIGATSEVGKGSTFFFTIPYKE 642


>gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 914

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q  YV+ IS+S + L+ ++ND
Sbjct: 406 QAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL---DRSQRFYVDTISSSGSSLMAVIND 462

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           ILD A +++G + L      L D+++E       +  +  +R+ V  +G +   +  D  
Sbjct: 463 ILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRLRLYVSLEGGVPRRIQGDPT 522

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNR 741
           RL Q+   +LSNA+ F+++G   +  + R +       +F+V ++G  I E     +F  
Sbjct: 523 RLKQVLMNLLSNALKFTAEGHVAVSVSRRSDSHGQPHLVFAVSDSGIGISEQALAKLFES 582

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F        RR  G GLGL+I +  + + GG + + S+    T     IP  E
Sbjct: 583 FAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTPGQGTRFAFDIPLLE 635


>gi|312602473|ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI
           454]
 gi|312169787|emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 685

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EA R A  +K+ FV  +S+ELR+PL  I+G+  LL   +  S  ++  + ++ I  ++
Sbjct: 297 RSEAER-ASRLKDEFVATLSHELRTPLNAIVGWAQLLL--RDASDPARVEKGLQVIHRNA 353

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +   +++D+LD++ + AG ++LN   + L D++ +V  ++        +R+  +  G  
Sbjct: 354 RLQSQMIDDLLDMSRIMAGKVRLNVQRVELVDVITDVIATVQLAADAKELRVMPVL-GAP 412

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D  RL QI   +L+NA+ F+ +   V +     +G+    V + G  I E     
Sbjct: 413 AVVNGDPARLQQIIWNLLTNAIKFTPRRGRVAVTLTSGDGEARLVVSDTGCGIREAFLPH 472

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           VF RF        R+  G+GLGLSIV+  + +HGGH++ +S  E
Sbjct: 473 VFERFRQEDASTTRQFGGLGLGLSIVKELVEMHGGHITAASDGE 516


>gi|291618164|ref|YP_003520906.1| RcsC [Pantoea ananatis LMG 20103]
 gi|291153194|gb|ADD77778.1| RcsC [Pantoea ananatis LMG 20103]
          Length = 949

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L  
Sbjct: 443 LVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQLP- 501

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             S     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +  + 
Sbjct: 502 --SGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSL 559

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +   I      +   D  RL Q+ S +L+NA+ F+  G  +IL A    G   
Sbjct: 560 VVKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTGC-IILHAYVTQGYLA 618

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F  ++ G  IP      +F+ F    +  QR  +G GLGL+I E  IN+  G + + S  
Sbjct: 619 FRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEP 678

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 679 GMGSQFIVRIP 689


>gi|126657454|ref|ZP_01728610.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
 gi|126621158|gb|EAZ91871.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
          Length = 569

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 16/252 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +     +Q +++E 
Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLI-LDGMADDAQEQQEFLEE 364

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670
              S+  LLNL+NDILD+A ++AG M L   ++ L +L   V      +    ++  R K
Sbjct: 365 AHKSALHLLNLINDILDIAKIEAGKMDLELGSVELAELFQAVDNFTLPQAQRKHLAFRSK 424

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIF----- 721
           + S         + QRLLQ+   ++SNA+ F+ +GS V    I+K      D  F     
Sbjct: 425 LPSTLTPIMVYGNYQRLLQVMFNLVSNAIKFTHEGSIVVNAEIVKKKIKYQDQEFPGLVK 484

Query: 722 -SVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  D    +F +FV    +H     G GLGL+I +  +   GG V   S  
Sbjct: 485 VSVTDTGIGVSLDQQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLVQAMGGQVEFYSMG 544

Query: 779 EGV-TTINCRIP 789
           EG+ +T+   +P
Sbjct: 545 EGLGSTVTFTVP 556


>gi|34497076|ref|NP_901291.1| sensor/response regulatory hybrid protein [Chromobacterium violaceum
            ATCC 12472]
 gi|34102933|gb|AAQ59297.1| probable sensor/response regulatory hybrid protein [Chromobacterium
            violaceum ATCC 12472]
          Length = 1748

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T++   E+ L E      +A  +K+ F+ ++S+E+R+P+  ++G   L++ ++L   +
Sbjct: 1002 DITETRAYEQNLLEAKRQAEEASMVKSQFLANMSHEIRTPMNAVLGLLQLMQHTRL---D 1058

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q  YV  I A++  LL L+NDILD + +DAG ++L+     L  L+ E+   ++   +
Sbjct: 1059 ERQLDYVGKIQAAAKSLLGLLNDILDFSKIDAGKLQLDLHPFDLEGLMRELAVVLSGNTN 1118

Query: 664  ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG--D 718
            + ++ +    +  L +  + D+ RL QI   +  NA+ F+++G  V  + + AR  G  +
Sbjct: 1119 DKDVEVLFRMEPTLPAMLIGDKLRLQQILINLAGNALKFTTQGQVVLAVRERARREGEVE 1178

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                V + G  I  +    +F  F        RR  G GLGL I    + L GG + + S
Sbjct: 1179 LRIEVSDTGIGIAPEQLSRIFEGFTQAEASTTRRFGGTGLGLVISRRLVELMGGQLRVES 1238


>gi|289582943|ref|YP_003481409.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289532496|gb|ADD06847.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 838

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 14/267 (5%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           LE +I P     ++  F +VTD    +R L E NE L +       F    S++L+ PL 
Sbjct: 566 LEVTIYPSETGSSVY-FRDVTDRREYQRRLEESNERLEQ-------FAYAASHDLQEPLR 617

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +  + DLL+T     L+    ++++Y    +  +  ++N +L+ + ++       +  +
Sbjct: 618 MVSSYLDLLETRYADELDEDAQEFIDYAVDGAERMRQMINGLLEFSRIE--TQGEPFEPV 675

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L+++L +V + +  K+ EN+  I   S  +L     D  +L Q+F  +LSNA+ +S + 
Sbjct: 676 DLDEVLEDVMRDLRVKIVENSADI---SAAELPRVAGDGNQLRQVFQNLLSNAIVYSGEE 732

Query: 706 STVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
              I   A D G +++ SV +NG  I  D  + +F  F      G+  G G+GL++ E  
Sbjct: 733 PPEIDIQAHDTGSEWVISVSDNGVGIDPDDTEQIFGLFERRHSGGEHTGSGIGLALCERI 792

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  HGG + + S      T +  +P++
Sbjct: 793 IERHGGEIWVDSEPGEGATFSFTLPTR 819


>gi|87308804|ref|ZP_01090943.1| PAS protein [Blastopirellula marina DSM 3645]
 gi|87288515|gb|EAQ80410.1| PAS protein [Blastopirellula marina DSM 3645]
          Length = 1373

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 128/241 (53%), Gaps = 15/241 (6%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++TD + AE+      EA R A   ++ F+  +S+ELR+PL   +  T +L      +L+
Sbjct: 991  DITDRINAEK------EA-RAAVNNRDQFLAMLSHELRNPLGATLTATYVLDLEP--NLS 1041

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--K 661
                +  + I   +     L++D+LD++ V  G +++    + L  L+ +V Q++A   +
Sbjct: 1042 PDVREVCDVIQRQTLQAARLLDDLLDVSRVMRGKIEIRPQVVDLRTLVEDVTQAVAPLIQ 1101

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
              E+N+ I+V     L     D  RLLQI   +L+NA  +++ G  +    +R++G+ + 
Sbjct: 1102 AREHNLVIEVPETPVL--VEGDPTRLLQIQENLLANAARYTAPGGEIRFSLSREDGEAVN 1159

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
             VK+NGS IP  M + +F  FV +     R   G+GLGL++V++ + LHGG VS  S   
Sbjct: 1160 RVKDNGSGIPPHMLERIFELFVQSDDTLDRTDGGMGLGLTLVKTLVELHGGRVSAHSDGP 1219

Query: 780  G 780
            G
Sbjct: 1220 G 1220


>gi|239905602|ref|YP_002952341.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795466|dbj|BAH74455.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 585

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 127/245 (51%), Gaps = 22/245 (8%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-------------KTS 597
           A + L+E N  L++ D+IK+ F++ VS+ELR+P+T+I+GF  L+             +  
Sbjct: 325 AAKELSEANVRLQEVDKIKSVFIESVSHELRTPMTSIMGFIKLISKDFWKNFKPFLDQNE 384

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           KL     +  + ++ +      L  L+ND+LD A +++G MK +     +ND+L     +
Sbjct: 385 KLKKKTERIMENLQIVEFEGERLTRLINDVLDSAKIESGRMKWDDQIFQINDVLWLAVST 444

Query: 658 IATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           I  ++    I + V+  +D       AD  RL+Q+   +LSNA+ F+S G   +   +  
Sbjct: 445 IKGQL---PIGVDVLYSNDNSSPWVKADPDRLMQVMMNLLSNAVKFTSNGYVSVSYESSL 501

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           +     +VK+ G  IP+   + VF+RF      N +  + +G GLGLSI +  ++ +GG 
Sbjct: 502 SNILTVTVKDTGVGIPDGDLEKVFDRFHQVQQDNDNESKPKGTGLGLSICKQVVDHYGGK 561

Query: 772 VSISS 776
           + + S
Sbjct: 562 IWVES 566


>gi|158340469|ref|YP_001521463.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158310710|gb|ABW32324.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 677

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 124/232 (53%), Gaps = 10/232 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+E R+PL  I+GF+ LL   +   +   Q   ++ I  S   LL+LV
Sbjct: 180 ANQAKSKFIANMSHEFRTPLNAIMGFSQLLLRDR--RITPDQQSRLDVIYRSGEHLLSLV 237

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           N+++ L+ ++ G++      + L  L   VK+  + +    +I++++     +  F+  D
Sbjct: 238 NEVITLSKIEDGVLTYEPKDVNLYHLCEGVKELFSLQASSKDIQLQLRIAPDVPRFIRTD 297

Query: 684 RQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG---DFIFSVKNNGSSIPEDMCKS 737
            Q+L QI   +L NA+ ++ +GS    V  +  R         FS+++ G  IP+ +   
Sbjct: 298 AQKLRQILINLLGNALKYTKRGSVECRVQWRPPRTETLPHHIEFSIQDTGPGIPQHLLPK 357

Query: 738 VFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  FV +   R +  G+GLGL I + F++L GG +SI S+++  T ++  I
Sbjct: 358 LFEHFVQDPLTRDKFGGIGLGLCICQRFVHLMGGDISIESTEDHGTIVDFYI 409


>gi|120437377|ref|YP_863063.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
 gi|117579527|emb|CAL67996.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
          Length = 813

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 130/240 (54%), Gaps = 13/240 (5%)

Query: 547 DSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D  R++R   +  EA   A+ +   +  F+  ++++LRSPLT ++G+TDL++ +    LN
Sbjct: 291 DVTRSQRYRVQLEEAKEFAESLLASREQFMAAITHDLRSPLTTVMGYTDLIQKT---DLN 347

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ  Y+  I  SS  +L LVND+LDL+ ++AG M +   +    +L+ +   +I     
Sbjct: 348 EKQKHYLTQIKKSSEFILRLVNDLLDLSKLEAGKMLVEKLSFNPKNLIKDTVNNIIPAEK 407

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718
           + +++I++ +S        +D  R+ QI + ++SNA  F+ KGS +I     +++ +N  
Sbjct: 408 KKDVKIQIEVSKETNVQIQSDPFRIKQILANLISNAWKFTEKGSILIAAKLQESSTENHI 467

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               VK++G  I ++M  S+F  F       ++R  G GLGL+I +    L  G + ++S
Sbjct: 468 LEIRVKDSGIGISKEMQASIFEEFSQENSSIEKRFGGSGLGLAITKRLTELLEGKIKVNS 527


>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1191

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 124/244 (50%), Gaps = 12/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +VT +      L +  +A   A+  K+ F+ ++S+E+R+P+  +IG T+LL  +   +
Sbjct: 517 LTDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDT---T 573

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y+  + +SS  LL ++NDILD + ++AG M +      L   + +  +++  +
Sbjct: 574 LDAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLR 633

Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG 717
            H+  + +   V  D    + V D  RL Q+   IL NA+ F+ +G  V  I +    NG
Sbjct: 634 AHDKGLEVVWDVAPDVPR-ALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASNG 692

Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +   +V + G  IP +   S+F+ F        R+  G GLGL+I    +   GG + 
Sbjct: 693 KPLLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIW 752

Query: 774 ISSS 777
           + S+
Sbjct: 753 VEST 756


>gi|218887461|ref|YP_002436782.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758415|gb|ACL09314.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1499

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 14/251 (5%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKT 596
             F +++    AE+AL    E    A+E+K+ FV ++S+E+R+PL+ I+G  D+    L  
Sbjct: 1030 AFQDISRLYEAEQALQRAKEEAESANELKSQFVANISHEMRTPLSGILGIVDVALSRLND 1089

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            + L + +++Q  Y+  I   S  LL+++ND+LD + ++AG + L+     L   +++   
Sbjct: 1090 TALPAHDNEQGHYLSMIRNVSEGLLHVINDLLDFSRMEAGRLGLDQVEYDLRAAVSDALA 1149

Query: 657  SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI------ 709
             +A +     + + V  D  + +    D  RL QI   +  NA+ F+   +  +      
Sbjct: 1150 PLAVQAERKGLSLTVHIDADVPARLQGDPLRLRQILVNLAGNAVKFTDTDTGSVHVDVRR 1209

Query: 710  -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
              +  R  G   F+V++ G  I  D    +F  F     +H  +  G GLGL+I    + 
Sbjct: 1210 SAQCPRPGGCLRFTVQDTGPGITADKLPLLFESFSQADGSHTRRHSGSGLGLAISRHIVR 1269

Query: 767  LHGGHVSISSS 777
            L GG + ++S+
Sbjct: 1270 LQGGDIGVNST 1280


>gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 780

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 8/239 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  RAE  L    E    A+  K+ F+  +S+E+R+P+ +I+G  +LL  S    L 
Sbjct: 378 DVTERHRAEFELLTAKEQAEAANRTKSEFLAMMSHEIRTPMNSILGMAELLSES---PLT 434

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y++    +   LL L+NDILDL+ ++AG ++L      L +LL  V   +     
Sbjct: 435 PEQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENLAR 494

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI 720
           E  + +++    ++ +    DR RL QI   ++ NA+ F+  GS  I   K++ D  + +
Sbjct: 495 ERGLALRLERMEEIPTLCQGDRARLRQIMVNLVGNAIKFTHDGSVKISVEKSSDDATNLL 554

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           F V ++G  I E    SVF RF        R   G GLGL+I    + L GG + + S+
Sbjct: 555 FHVIDSGIGIAEKDQSSVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLKSA 613


>gi|311032689|ref|ZP_07710779.1| two component system histidine kinase [Bacillus sp. m3-13]
          Length = 933

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 131/261 (50%), Gaps = 16/261 (6%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +D  +A+  L EK + L+ + + K+ F+ ++S+ELR+PL +I+  +++L       L  +
Sbjct: 491 SDLQKAKTELEEKAKQLQLSSKYKSEFLANMSHELRTPLNSILLLSEMLAEDPEDQLTDE 550

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q ++   I++S   LLNL+NDILDL+ V+   +++ +  + + + +N ++          
Sbjct: 551 QREFSRVINSSGQDLLNLINDILDLSKVEVKKLEVMFGEVNVEEFINRLELQFTHIAKHK 610

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDN------ 716
            +  +++   +L   F  D QRL QI   +LSNA  F+ +G  S  I KA + +      
Sbjct: 611 KLNYEIVRGNQLPDVFFTDEQRLQQIVKNLLSNAFKFTEQGKVSVKIEKAPKRDLLRANV 670

Query: 717 ---GD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
               D     SV++ G  I +D    +F  F        R+  G GLGLSI + F NL G
Sbjct: 671 NVKADTWLKISVEDTGIGISKDKQSLIFEAFHQGDGATMRKYGGTGLGLSISKEFSNLLG 730

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G V + S +   +     IPS
Sbjct: 731 GSVFVESEEGEGSVFTLLIPS 751


>gi|294775421|ref|ZP_06740936.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294450741|gb|EFG19226.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 781

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 143/271 (52%), Gaps = 21/271 (7%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++PL     ++  +  ++T+    E+ L        ++D +K +F+ ++S+E+R+PL  
Sbjct: 380 TLVPLEGRTPLIIGISWDITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNA 439

Query: 587 IIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           I+GF+ L+  +     N++  + Y + I+ +S ILL L+NDILDLA ++AG ++     +
Sbjct: 440 IVGFSHLMTIAD----NAEDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPM 495

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDF 701
            L +L   V +     MH++ ++  V  I D K  S +   D+ R++Q+ + +++NA+ F
Sbjct: 496 DLGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKF 550

Query: 702 SSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           + KG        R+  ++I F VK+ G  I E+  K +F RFV      Q  G GLGL+I
Sbjct: 551 TFKGEIRFGFEVRE--EYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAI 606

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +   GG ++  S     +T    IP K
Sbjct: 607 CRVIVEKLGGEITAESKLNEGSTFRFTIPYK 637


>gi|307152409|ref|YP_003887793.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306982637|gb|ADN14518.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 667

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 126/273 (46%), Gaps = 58/273 (21%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI------LLNL 623
           ++F+  +S+ELR+PL  I+G + LL        ++++  Y+E+I     I      LL+L
Sbjct: 390 SAFLASMSHELRTPLNGILGLSQLLLE------DAEEEGYIEFIDDLKQIHQSGLHLLSL 443

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + DILD++ ++AG M L   T  L  L+NEVK +I   + +NN  ++V     LG+ VAD
Sbjct: 444 IEDILDISKIEAGKMTLYPETFDLPVLINEVKNTIQPLIKKNNNTLEVKLSNALGAMVAD 503

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------------------- 718
           R+R+ QI   +LSNA  F+  G  +IL   R   D                         
Sbjct: 504 RKRVKQILLNLLSNAAKFTDHGQ-IILTVTRQEKDHLITAESSPQTNGNQSPKMNQINGY 562

Query: 719 ------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
                              IFS+ + G  +  +    +F  FV       ++  G GLGL
Sbjct: 563 ASPPTQATVSDISASSDWVIFSISDTGIGMTTEQMNKIFQPFVQADSSTTKKYGGTGLGL 622

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SI + F  + GG +S++S     +T +  +P++
Sbjct: 623 SICQRFCEMMGGSISVNSEVAVGSTFSVSLPTR 655


>gi|306842152|ref|ZP_07474821.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO2]
 gi|306287739|gb|EFM59170.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO2]
          Length = 522

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 7/228 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 242 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 301

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 302 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 361

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            QI   + +NA+ F+  G  V + AAR   D G  + FSV + G  I  +  + +   FV
Sbjct: 362 QQILLNLATNAVKFTQSGGCVTIDAARVMADGGPMLEFSVSDTGIGIDLEDLQRIGTPFV 421

Query: 744 --SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              N++   + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 422 RAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLP 469


>gi|298291052|ref|YP_003692991.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
 gi|296927563|gb|ADH88372.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
          Length = 530

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 20/248 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L   D  +  F   VS+ELR+PLT I+G  ++       +L   Q +  +  +
Sbjct: 280 LRAANTRLENVDLARRRFFTDVSHELRTPLTVILGEAEI-------TLRPAQPREEDLRA 332

Query: 615 ASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           A  TI      L   V D+L +A  ++G ++L+ S  ++ DL+ ++++S+        + 
Sbjct: 333 ALLTIQSRARRLHRRVEDLLRIARSESGQIELDRSFFLVCDLITDLRESMQPVARAAGLT 392

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++           ADR  L Q F  +++NA+  S  G TV ++AAR+ GD +  V ++G+
Sbjct: 393 LETACMPDDLVIDADRDWLRQTFDGLIANAVRHSPPGETVRVEAAREAGDVVIRVSDHGT 452

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS------SDEGVT 782
            IP D    VF RF   A R +  G G+GL++ +  ++ HGG + I S         G T
Sbjct: 453 GIPSDDLPHVFERFWRGAAR-EGTGFGIGLALAKWIVDRHGGRIEIDSRVADGEGRRGGT 511

Query: 783 TINCRIPS 790
            +  R+P+
Sbjct: 512 CVTVRLPT 519


>gi|150006477|ref|YP_001301221.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149934901|gb|ABR41599.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 781

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 143/271 (52%), Gaps = 21/271 (7%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++PL     ++  +  ++T+    E+ L        ++D +K +F+ ++S+E+R+PL  
Sbjct: 380 TLVPLEGRTPLIIGISWDITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNA 439

Query: 587 IIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           I+GF+ L+  +     N++  + Y + I+ +S ILL L+NDILDLA ++AG ++     +
Sbjct: 440 IVGFSHLMTIAD----NAEDEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPM 495

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV--ADRQRLLQIFSKILSNAMDF 701
            L +L   V +     MH++ ++  V  I D K  S +   D+ R++Q+ + +++NA+ F
Sbjct: 496 DLGELCRNVYE-----MHKDRVQTGVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKF 550

Query: 702 SSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           + KG        R+  ++I F VK+ G  I E+  K +F RFV      Q  G GLGL+I
Sbjct: 551 TFKGEIRFGFEVRE--EYIDFYVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAI 606

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +   GG ++  S     +T    IP K
Sbjct: 607 CRVIVEKLGGEITAESKLNEGSTFRFTIPYK 637


>gi|126666595|ref|ZP_01737573.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
 gi|126628983|gb|EAZ99602.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
          Length = 947

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 39/272 (14%)

Query: 545 VTDSVRAERALTEKNEALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGF 590
           V + +R+E AL    + LR A                 K+ F+ ++S+E+R+P+  +IG+
Sbjct: 561 VDERIRSENALRRSEDELRAAKIEAERLAREAEAASRTKSEFLANMSHEIRTPMNAVIGY 620

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +DLL  +     + +Q  Y++ I A S  LL L+NDILDL+ ++AG M+L+Y+ + +  +
Sbjct: 621 SDLLSNT---VTDPQQRNYLDAIRAGSRALLMLINDILDLSRIEAGKMRLDYAPVSMRRM 677

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708
           L +V      +  +  + ++V    K+  + + D  RL Q+   +  NA+ F+ +G  TV
Sbjct: 678 LGDVLHIFDLRARDQGVTLEVSVGKKMPAALMLDETRLRQVLFNLAGNAIKFTHEGGVTV 737

Query: 709 ILKAAR----------DNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             KA+             G+          +V + G  I  D  + VF+ F     +  R
Sbjct: 738 RAKASPLPKQSYPPGTKPGEPEHPRYRLEITVTDTGIGIATDQQERVFDAFEQQEGQNSR 797

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSS-DEG 780
           R  G GLGL+I      + GG +++ S+ DEG
Sbjct: 798 RYGGTGLGLAISRKLALMMGGELTLKSTLDEG 829


>gi|110598715|ref|ZP_01386978.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339660|gb|EAT58172.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 604

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 116/219 (52%), Gaps = 3/219 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E+K S +  VS++LR+PLT++     LL   ++G+LNSKQ++ +      S  L ++++D
Sbjct: 375 ELKRSVIATVSHQLRTPLTSLRMSIYLLLEERIGTLNSKQAELLLAAREESERLSHILDD 434

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQ 685
           +LDL  +++G   LN        L  E       +  +  +  +  + +G +   +AD +
Sbjct: 435 LLDLNRIESGKAHLNIQPASPFRLATEGVDPFTAEARDKRVNLVNTVPEG-VSEVMADPE 493

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+  +F+ +LSNA+ F+    ++ + A  D  +  FSV N+G  I  +  + +F +F   
Sbjct: 494 RIRHVFANLLSNALRFTPPDGSITVSACEDEDNVRFSVANSGEGIASEHLEHLFEQFYRV 553

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             +    G+GLGLSIV+  +  HGG V  + S+ G  +I
Sbjct: 554 PGQRDESGIGLGLSIVKEIVEAHGGTVG-AESNPGTGSI 591


>gi|71907206|ref|YP_284793.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846827|gb|AAZ46323.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 841

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 132/259 (50%), Gaps = 29/259 (11%)

Query: 542 FVNVTDSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSP 583
           F ++T+  + ER L   +E L +                  A++ K++F+ ++S+ELR+P
Sbjct: 346 FSDITERKKTERELASHHERLEEQVRERTEELSVARDQAEAANQSKSAFLANMSHELRTP 405

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  +IGF+ L++  K   L   Q + +E I+ S   LL L+NDIL+L+ +++G +++   
Sbjct: 406 LNAVIGFSQLME--KDPGLLPVQQRNLEIINHSGRHLLTLINDILELSKIESGKLRMTTE 463

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              L  LL +V + +  +  +  +++K+ +       V D     QI   +LSNA+ F+ 
Sbjct: 464 ETDLRLLLEQVVEMMHLRAQQLGLQLKLETTNLPPLIVIDPGMFRQILLNLLSNALKFTP 523

Query: 704 KGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           KG   +  AA           FSV++ G  I E+  + +F+ F  V   H+G   G GLG
Sbjct: 524 KGEVCLHVAAEAVSAQQSRIRFSVRDTGIGISENDRERIFSSFEQVGPMHQG---GTGLG 580

Query: 758 LSIVESFINLHGGHVSISS 776
           L+I   ++ + GG +S+ S
Sbjct: 581 LTISRRYVEMLGGELSVDS 599


>gi|75908887|ref|YP_323183.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702612|gb|ABA22288.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 708

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T + EA   A+ IK+ F+  +S+ELR+PL  I+G++ LL+  KL    ++  Q +  I  
Sbjct: 324 TARAEA-ETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKLEP--ARTFQALATIER 380

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++T+ + L+ D+LD++ +  G + +N + + L  ++    +++        I++      
Sbjct: 381 NATLQVQLIEDLLDISRILQGKLVINITKVNLVIVILTALETMRLAAESKLIQVSTNFPS 440

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K+G  + D  RL Q+   +LSNA+ F+ KG  + +   + +G     V + G  I  +  
Sbjct: 441 KMGQVMGDSARLQQVVWNLLSNAVKFTPKGGKIEVSLEKVDGYAQIVVSDTGKGIKPEFL 500

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIP 789
             VF+ F        RR  G+GLGL+IV   + +HGG V+  S  +E   +   R+P
Sbjct: 501 PYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQSLGEEQGASFTVRLP 557


>gi|158312523|ref|YP_001505031.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
 gi|158107928|gb|ABW10125.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
          Length = 1400

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 18/254 (7%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L EK E L  + + K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ  + E I
Sbjct: 869  GLEEKAEQLALSSQYKSEFLANMSHELRTPLNSLLILAKLLADNPDHNLSQKQIDFAETI 928

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             ++ + LL L+NDILDL+ V+AG M ++   +    L + V         E  +  ++ +
Sbjct: 929  HSAGSELLGLINDILDLSKVEAGKMNVDAGPVRTAALCDAVAGVFGPTAEEKGLTFEISV 988

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FI---------- 720
            ++     FV D QR+ Q+   +LSNA+ F+  G TV L  A  + D  F+          
Sbjct: 989  TEDVPDEFVTDEQRIQQVLKNLLSNAVKFTDAG-TVRLDVAVASPDTPFVAPSLRSAPMV 1047

Query: 721  --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              F+V + G  +  +  + +F  F        RR  G GLGLSI +    L GG +++SS
Sbjct: 1048 LSFAVTDTGIGVAAEKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSS 1107

Query: 777  SDEGVTTINCRIPS 790
                 +T    +PS
Sbjct: 1108 QIGQGSTFTLFVPS 1121


>gi|228994818|ref|ZP_04154616.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM
           12442]
 gi|228764926|gb|EEM13682.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM
           12442]
          Length = 449

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 12/236 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR +++++  FV +VS+E +SPL++I GF+  L+T+ L    S+Q+ Y+E I + S  + 
Sbjct: 211 LRNSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDL--TKSEQTHYLEIIESESRRMS 268

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS---DGKLG 678
           +L   +L LA++D   + L   +    DL N++K +I   M E   R K ++   D    
Sbjct: 269 SLCKQLLILASLDKEDLTLRKQSF---DLGNQIKDTIF--MLEWEWRTKELAVEMDVPNM 323

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D   L Q++  + +N++ F+  G T+  +A     ++  S+ + G  IPE+  K +
Sbjct: 324 QIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 383

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF  V  A      G GLGLSIV+  I+LH G +++ S     T  +  +P ++
Sbjct: 384 FDRFHKVDTARNRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTIFSIYLPKQQ 439


>gi|189423648|ref|YP_001950825.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419907|gb|ACD94305.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 667

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 128/245 (52%), Gaps = 11/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L  K+EA   A+  K+ F+ ++S+E+R+P++ +IG   LL   +L  LN++Q+ Y+ 
Sbjct: 275 EELLQAKSEA-EAANTAKSEFLANMSHEIRTPMSGLIGNAQLL---RLTQLNAEQTGYLT 330

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-K 670
            I   +  L++L+ND+LD++ ++AG ++L  +   L   + ++ +S   ++    I +  
Sbjct: 331 NIETDAKNLMSLINDVLDISKIEAGKLELESAPFSLRSCVAQLLKSQEARIAAKAIVLTH 390

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
            I+     S   D+ RL QI   ++ NA+ F++KG   +    L+   D   F FSV + 
Sbjct: 391 EIAADLPDSLFGDQLRLKQILYNLVGNAIKFTAKGEIRVKVELLERHDDKARFCFSVTDT 450

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +  + +F  F+       RR  G GLGLSI    +   GG +++ S +   +T 
Sbjct: 451 GIGIRPEAREKIFAPFIQADASVTRRFGGTGLGLSICSRLVQQMGGGITVESEEGKGSTF 510

Query: 785 NCRIP 789
           +  +P
Sbjct: 511 SVTLP 515


>gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 785

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 535 NAQTMLTFVNVTDS-VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            A+ +L   ++TD  V  E    E+ EA+R   + K+ F+ ++S+E+R+PL  I+G T+L
Sbjct: 106 GAEVLLGVFDITDQKVTEEHLRKEREEAIRSV-QSKSRFLANMSHEIRTPLHTILGMTEL 164

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ ++   L+ +Q  YV+ I  S   LL L+NDILD + ++AG + +      L +++ +
Sbjct: 165 LEDTR---LDEEQRDYVQQIRFSGEALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQ 221

Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VI 709
               ++ + H+ ++ + V I +        D  R+ QI   + +NA+ F+ KG     V 
Sbjct: 222 AVGMVSLQAHKKHLEVVVDIGEEVPRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQ 281

Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           L   R    ++ F+V++ G  IPE+    +F  F        RR  G GLGL+I +S + 
Sbjct: 282 LVQQRKGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVE 341

Query: 767 LHGGHVSISSSD 778
           +  G + + S +
Sbjct: 342 MMKGEIGVRSRE 353


>gi|281354910|ref|ZP_06241404.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317790|gb|EFB01810.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1480

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 8/242 (3%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            +FV++T++ +    L    E+ + AD  K+ F+  +S+E+R+PL  +IGF++LL+   L 
Sbjct: 1079 SFVDMTEARQQSEKLKAAMESAQAADRAKSFFLATMSHEIRTPLNAVIGFSELLQNQSLS 1138

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                +Q +Y+  I+ + T LL L+NDILDL+ ++AG +++    I    L  E+      
Sbjct: 1139 P--EEQVEYLHSINLAGTALLRLINDILDLSKIEAGEVRIVAEKIDFTALCGEINAIFTQ 1196

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
            K+ E  +  K+     L     D Q++ Q+   ++ NA+ F+ +G   +     +   + 
Sbjct: 1197 KVMEKKLYFKLEVPSGLPFLWLDGQQMRQVLLNLVGNAVKFTGEGGVTLKVEFRREGPEA 1256

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSI 774
            G    ++ + G  I  +  + VF  F+  NA R +   G GLGLSI +  I    G + +
Sbjct: 1257 GTLEIAIIDTGIGISREYQQKVFQPFIQDNAVRDRAYEGTGLGLSISQRLIRKMDGRLLL 1316

Query: 775  SS 776
             S
Sbjct: 1317 ES 1318


>gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 815

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 9/223 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A   K+ F+ ++S+E+R+P+  ++G   +L  S    L  +Q ++ E +  S  
Sbjct: 292 KEAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLES---GLAGEQRRFAEAVRNSGE 348

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+++NDILD + ++AG M+L  +   L DLL  V +  A       + + +  D  L 
Sbjct: 349 SLLSIINDILDFSKIEAGRMELEPAPFDLQDLLGGVLEMFAAGAQRKGVTVSLQLDPALP 408

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMC 735
            +V  D  RL QI   +L NA+ F+S+GS V LKAA   G+    F V + G  I  +  
Sbjct: 409 RYVEGDPVRLRQILVNLLGNAVKFTSRGS-VQLKAAALAGEGWLRFEVADTGIGIRPEAQ 467

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             +F  F    +   R   G GLGL+I      L GG + + S
Sbjct: 468 AHIFESFSQADYSTTRTYGGTGLGLAISRQLAELMGGELGLQS 510


>gi|258404324|ref|YP_003197066.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257796551|gb|ACV67488.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 810

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL++  E   +A+  K+ F+  +S+E+R+P+  ++G +DLL+ ++L   +++Q +Y+   
Sbjct: 419 ALSKAKEEAERANRAKSDFLSGLSHEIRTPMNALLGASDLLEKTEL---DARQRKYLRMG 475

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
            +S   LL+L+ ++LD+A ++ G ++L      L  ++ E    +     E  + + K I
Sbjct: 476 KSSGKTLLSLITNLLDVARLERGRLQLAREVFSLEQMVQEAIDVVELAAQEKGLILNKKI 535

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +    G+++ D  RL QI   +L+NAM F+ +G  ++     +    +F V + G  IP+
Sbjct: 536 ALAVRGTYLGDPVRLRQILVNLLNNAMKFTPQGRVLVEVTPAEQTGVLFRVSDTGEGIPQ 595

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  +++F  F  + ++      G GLGL+I    +   GG + + S
Sbjct: 596 ESLETIFEPFSQLDSSSGLPNSGSGLGLAISRQLLEAMGGRIWVES 641


>gi|226309995|ref|YP_002769889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226092943|dbj|BAH41385.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 474

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV--EYISASSTILL 621
           K +++KN F+  VS+ELR+PLT+I G+ + L +   G L   +   +  E IS  +  L+
Sbjct: 247 KNEKLKNDFISSVSHELRTPLTSIKGWGETLIS---GGLEEPEETMLGLEVISKETDRLI 303

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV ++LD +   +G MKL+   + + +LL ++    + + H   I +K+ +       +
Sbjct: 304 GLVEELLDFSKFQSGEMKLSRVPMDVRELLQDLHLQFSVRAHAKQIELKLETPPTPLIVM 363

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFN 740
            D  RL Q+F  +L NA+ F+ +  ++++ A+      + +V + G  I PED+   V  
Sbjct: 364 GDPNRLKQVFVNLLDNALKFTPQNGSIVIAASLSADRLLVTVTDTGEGINPEDL-PHVTE 422

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F     R +  G GLGL+I +  I LH G  S+SS+    T+I   +P
Sbjct: 423 KFFKG--RSKLSGSGLGLAICKEIIQLHAGRFSVSSALGQGTSIMVDLP 469


>gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 587

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 116/219 (52%), Gaps = 7/219 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K ++++  FV +VS+EL++P+T+I GF + L     G+++  Q+   ++  I   S  
Sbjct: 352 LKKLEQMRKDFVANVSHELKTPITSIKGFAETLLD---GAMHDAQTLEYFLTIILKESER 408

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+ D+LDL+ ++     LN S + L+++L EV   +  K ++  I ++  S+  +  
Sbjct: 409 LQHLIQDLLDLSKIEQQGFTLNISVVDLHEVLKEVIVMLEAKANDKQITLEYTSNAPVCY 468

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  RL QIF  +++NA+ ++  G  V +   +D  +    V + G  I +     +F
Sbjct: 469 MYGDLHRLKQIFINLINNAIAYTPAGGRVTVYVEKDEKELHVHVSDTGIGIEQKEIPRIF 528

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  V  A      G GLGL+IV+  +  H G +S+ S
Sbjct: 529 ERFYRVDKARSRNSGGTGLGLAIVKHLVEAHHGTISVKS 567


>gi|254429150|ref|ZP_05042857.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195319|gb|EDX90278.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 1224

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 15/227 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+ELR+PL +I+  ++ L  +K G+L  KQ ++ + I ++   LL+L+NDIL
Sbjct: 553 KSEFLSTMSHELRTPLNSILILSNALGQNKRGNLEEKQVEHAQVIHSAGADLLSLINDIL 612

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D++ ++ G M +    +   +++   +++ A      N+  KV + D     F  DRQRL
Sbjct: 613 DISKIEEGKMDVIIDDLSPPEIIEHFRRNFAHVAESRNLDFKVELGDTLPEHFYTDRQRL 672

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------------FSVKNNGSSIPEDMC 735
            QI   +LSNA+ F+ +GS  +     D  + +            F+V + G+ I ++  
Sbjct: 673 EQIIKNLLSNALKFTEQGSVTLSITQPDVSETLPSRHLVPGQTLKFAVIDTGTGIADEKQ 732

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           K +F  F        R+  G GLGL+I      L GG + + S  EG
Sbjct: 733 KLIFEAFQQADGTTSRKYGGTGLGLTISRELARLLGGEIGLHSDGEG 779


>gi|84390109|ref|ZP_00991371.1| sensor histidine kinase/response regulator [Vibrio splendidus
           12B01]
 gi|84376763|gb|EAP93638.1| sensor histidine kinase/response regulator [Vibrio splendidus
           12B01]
          Length = 937

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSTSQTDYLQTIERSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           +++NDILD + ++AG + L          L EV    AT  HE  + + +  D K+    
Sbjct: 341 SIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  +   + D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|239908525|ref|YP_002955267.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798392|dbj|BAH77381.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 669

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 127/241 (52%), Gaps = 22/241 (9%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +FV+V+D +RA+    +  EA R    +K++F+ ++S+E+R+PL  I+G + LL  +   
Sbjct: 267 SFVDVSDLIRAQ---VQAEEASR----MKSAFLANMSHEIRTPLNAIMGLSQLLLRA--- 316

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L  +Q + VE + A+   LL ++NDILD + ++ G +++  + + ++ LL EV++ +A 
Sbjct: 317 NLPPQQRECVETMRAAGEGLLVILNDILDFSRIEMGRLEIRPAPMDIDRLLEEVRRVMAQ 376

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              +  + + +  D  L   V  D  RL QI   +LSNA+ F+  G  V L A R   + 
Sbjct: 377 AADQQGLTLAIERDPSLPRVVLCDPVRLKQILLNLLSNAIKFTPSGR-VTLSARRATANL 435

Query: 720 --------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                    F+V + G  I  ++ + +F  FV       R   G GLGLSI    + L G
Sbjct: 436 GHEGPPRVTFAVHDTGPGITPEVRERIFEPFVQTDDAVARNPGGTGLGLSISNRLVELLG 495

Query: 770 G 770
           G
Sbjct: 496 G 496


>gi|225574099|ref|ZP_03782710.1| hypothetical protein RUMHYD_02164 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038699|gb|EEG48945.1| hypothetical protein RUMHYD_02164 [Blautia hydrogenotrophica DSM
           10507]
          Length = 471

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 125/232 (53%), Gaps = 5/232 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L   ++ L ++ E + +F+ ++S++ RSPLT+I G+ + +    +      Q +Y+E +
Sbjct: 233 SLNYMSDVLNQSGEYQRNFIANISHDFRSPLTSIKGYVEAIADGTIPV--EMQGRYLEIV 290

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S     L  L + +L L  ++     +N     +N ++     S         I I++I 
Sbjct: 291 SREVERLEKLTSSLLTLNNLEVKSRIMNIRPFDINKVIKNTAASFEGSCRARKILIELIL 350

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            G+  S  AD +++ Q+   +L NA+ FS+  ST+ ++    NG    SVK++G  IP++
Sbjct: 351 TGEQLSVTADMEQIQQVLYNLLDNAIKFSNDNSTITIETTEKNGKIFVSVKDHGCGIPKE 410

Query: 734 MCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +   ++ RF   ++ RG+ R+G GLGLSIV+  I+ H  ++++ S+ EGV T
Sbjct: 411 ILPKIWERFYKQDSSRGKDRKGTGLGLSIVKEIISSHNQNINVIST-EGVGT 461


>gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
 gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
          Length = 711

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 6/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E    A++ K+ F+  +S+E+R+P+  IIG  D+L  +    L  +Q  YV  + 
Sbjct: 195 LEEAREVAVIANDAKSDFLAKMSHEIRTPMNGIIGMADMLSET---DLTPEQDSYVSTMV 251

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD + ++AG + L      L +++ +V Q +A       + +     
Sbjct: 252 RSGDALLTIINDILDFSKIEAGKLTLASEPYRLREIVEDVTQLLAPLAARKGLMLYSDVA 311

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L    + D  RL QI   I  NA+ F+ +G   +  +A   G  +  V ++G  IP D
Sbjct: 312 PDLPEIMLGDAGRLRQILVNIAGNAVKFTLEGHVALRASAGGPGQIVIRVHDSGVGIPSD 371

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF  F  V N       G GLGL++    + L GG +++ S +   T  +  +P
Sbjct: 372 QQDKVFTAFEQVDNTATRSFGGTGLGLAVSRQLVTLMGGTLTLHSREGEGTRFDITLP 429


>gi|125974566|ref|YP_001038476.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|125714791|gb|ABN53283.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
          Length = 387

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 14/241 (5%)

Query: 552 ERALTEKNEALR----------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKL 599
           +R L EKNE +R          K+   K+ F  ++S+EL++PL+ I+G   L+  K    
Sbjct: 99  QRELEEKNELIRNLTSLYEKTIKSSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLD 158

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G+   K ++++  I  +   LL L+N+ILD++ +D+G +K N     +  L+ ++  S+ 
Sbjct: 159 GNDRRKSTRHLITIKQNCYRLLRLINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVI 218

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             + +  + ++  +  +      D  ++ +I   +LSNA+ F++ G  + +K A+     
Sbjct: 219 PYVEQKGLTLEFDTLEEEIITAVDVDKIERIILNLLSNAVKFTNPGGKITVKVAKKFNKV 278

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I  VK+ G  IP++M  ++F R+  V N    +  G G+GLSIV+SF+ LH G + + S 
Sbjct: 279 IIKVKDTGIGIPKNMQAAIFERYRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSK 338

Query: 778 D 778
           +
Sbjct: 339 E 339


>gi|257454302|ref|ZP_05619568.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
 gi|257448319|gb|EEV23296.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
          Length = 555

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 131/251 (52%), Gaps = 14/251 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V+D+++    L ++     +ADE+K +F+ ++S+E+R+P+  IIG  +LL+ +    L++
Sbjct: 159 VSDTLK----LRQQRYQAERADEVKTAFLANMSHEIRTPMNGIIGILELLEQT---PLDT 211

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  Y++ I  S+  LL +VNDILDL+ V++G ++     + L  L  +V Q       +
Sbjct: 212 QQQHYIKSIKTSNEHLLTIVNDILDLSKVESGKIRFESIPVDLAQLCQDVYQCFLATAKD 271

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF 721
           N++ +       L  +V  D  R+ QI   +++NA+ F+ K   V ++A    D     F
Sbjct: 272 NSVELTFDYPDNLPKYVNTDPVRVRQILINLVNNAIKFTPKQGKVTIQAMNGGDKHQIKF 331

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778
           +V + G  I  +    +F+ + + A +   R   G GLGLS+ ++     GG + ++S  
Sbjct: 332 NVIDTGVGIKPESLAVIFDAY-NQADKFTHRLYGGTGLGLSVCKALAEGMGGTIKVTSEK 390

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 391 NKGSTFTLSLP 401


>gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 742

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 127/244 (52%), Gaps = 11/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    +A   A   K+ F+ ++S+E+R+PL  ++G   LL++   G  +++Q +YVE  
Sbjct: 362 ALRAAKDAAEDASRSKSEFLANMSHEIRTPLNGVLGMLQLLES---GRPSAEQREYVETA 418

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L  L++DILDL+ +++  + +   +  + D+   +     T   E  +R++V  
Sbjct: 419 IRSTNRLTRLLSDILDLSRIESNKLVIQEESFAVADVRQSILDIFETPAREKGVRLEVRV 478

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFI-FSVKNNG 727
           D ++ +    D  RL QI   ++ NA+ F+ KG      V++ AA ++   I F+V+++G
Sbjct: 479 DPRIPAHLFGDEARLRQILFNLVGNAVKFTPKGQVAVNFVLVSAAGESTCQIRFTVQDSG 538

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +  K +F  F+       R  +G GLGL+IV   ++L  G + I S+    T + 
Sbjct: 539 VGIPSERLKDIFEPFIQVDGSCVRSHQGAGLGLAIVRRLVDLMHGQLQIQSTQGEGTLVG 598

Query: 786 CRIP 789
             +P
Sbjct: 599 VTLP 602


>gi|332703722|ref|ZP_08423810.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 880

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 125/248 (50%), Gaps = 18/248 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +       A+  K+ F+  +S+E+R+P+  +IG T+L   + +    
Sbjct: 471 DITERKRLEEDLFQAKAEAEAANRAKSEFLASMSHEIRTPMNGVIGLTEL---ALMQEPK 527

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K   Y+  +  S+  LL+++NDILDL+ ++AG ++L  +   L D+L+ + +++     
Sbjct: 528 GKVRDYLGLVKQSANSLLDIINDILDLSKIEAGRVELENADFDLRDMLDSLFETMRLTAE 587

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN--- 716
              +      D  +  ++  D  RL QIF  ++ NA+ ++  G   +   L+ A D+   
Sbjct: 588 RKRLSFTAAIDPGVPDWIKGDEGRLRQIFVNLIGNAVKYTETGQVSVHVGLENAHDSPVA 647

Query: 717 GD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
           GD         + SVK+ G  IP++  + +F+ F + A   +  G GLGL+I    + L 
Sbjct: 648 GDSDKPEHICLLVSVKDTGIGIPKNKLEKIFDPFDTGARGAKHDGTGLGLTITNRLVELM 707

Query: 769 GGHVSISS 776
           GG + + S
Sbjct: 708 GGRIIVRS 715


>gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
           DSM 2228]
          Length = 921

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 141/275 (51%), Gaps = 26/275 (9%)

Query: 540 LTFVNVTDSVRAERALTE-------KNEALRKADE-------IKNSFVQHVSYELRSPLT 585
           + +V++T+ V A   + E       KN  L++A +        K+ F+  +S+E+R+P+ 
Sbjct: 360 IVYVDITEKVEALNKMEEYSNELKLKNLELKQARDKAMEASRAKSEFLSTMSHEIRTPMN 419

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +IIG  +LL+ ++   L+ +Q +Y+     +   LL L+NDILDL+ ++AG ++L     
Sbjct: 420 SIIGMAELLQETE---LSEQQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAEKF 476

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L + +  + + I+ +  +  + + + I+       + D +R+ QI   +L NA+ F+ K
Sbjct: 477 NLVETVENIAEMISLRAFKKGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFTEK 536

Query: 705 GSTVI-LK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           G   + L+      ++D    IF++K+ G  I +   K +F+ F        R+  G GL
Sbjct: 537 GQVFLDLRIDSEFKSKDQKQVIFAIKDTGIGIEKAKQKQIFDSFTQADSSSTRKYGGTGL 596

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL+I +  + L GG + + S+ +  +T    +P K
Sbjct: 597 GLTISKQLVELMGGKIWLKSTPQLGSTFYFSLPLK 631


>gi|326795178|ref|YP_004312998.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326545942|gb|ADZ91162.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 1000

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 8/221 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  IIG T L+  ++L     +Q +Y+  I  SS  LL L+NDILD +
Sbjct: 243 FLATMSHEIRTPMNAIIGLTHLVLDTEL---QERQRRYINRIDESSNNLLQLINDILDFS 299

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690
            V++G + L   + +L+D+L  +            + + V  D  L  +F+ D  R+ Q+
Sbjct: 300 KVESGKLDLVERSYLLDDVLEYIHHISLPTARSKKLLLLVQRDFNLDDAFIGDVTRIQQV 359

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              ++ NA+ F+ KG   +    R  G  +F V+++G  I  D    VF+ F        
Sbjct: 360 LVNVVGNAIKFTDKGYVCVTVKRRQEGGLLFCVEDSGIGI--DSTLDVFDGFTQADASTT 417

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           R+  G GLGLSI +  + L GGH+S  S     TT    +P
Sbjct: 418 RKYGGTGLGLSISKRLLELMGGHISFKSQVGRGTTFFIELP 458


>gi|299146661|ref|ZP_07039729.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517152|gb|EFI41033.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 785

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 143/270 (52%), Gaps = 17/270 (6%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +L  +  ++T+    E+ L +      ++D +K++F+ ++S+E+R+PL  
Sbjct: 383 ALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ LL +++      ++  Y   I+ +S ILL L+NDILDL+ ++AG   L Y    
Sbjct: 443 IVGFSQLLPSAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497

Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           +N  L EV ++I T +H+  ++  + ++ D +    +   D+ R++Q+ +  L+NA  F+
Sbjct: 498 MN--LGEVCRTIYT-VHKERVKEGVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNASKFT 554

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +G  +     R + D    VK+ G  I  +    +F RFV      Q  G GLGLSI  
Sbjct: 555 YEGE-IRFGFGRMDKDIRVYVKDTGIGIESEKVDHIFERFVKLNSFAQ--GTGLGLSICR 611

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             I   GG + ++S     +T    IP +E
Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|260175269|ref|ZP_05761681.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315923502|ref|ZP_07919742.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697377|gb|EFS34212.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 543

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 126/241 (52%), Gaps = 11/241 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL  S 
Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               N K+ Q YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ ++
Sbjct: 343 ----NKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLGIKSFCEDIIRN 398

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
              K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  V+      ++
Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIVLEYHYKAES 457

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  F+V + G  I  D    VF+RFV  N+     +G GLGLSI  S I   GG + + 
Sbjct: 458 NEIEFAVTDTGMGIAPDKVNQVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIGVE 514

Query: 776 S 776
           S
Sbjct: 515 S 515


>gi|126660462|ref|ZP_01731571.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126618275|gb|EAZ89035.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 842

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 7/236 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE     K  A  KA++ K+ F+  +S+ELR+PL  I+G+  L+  S   S + + +  
Sbjct: 367 QAEELAMAKMSA-EKANQAKSEFLASMSHELRTPLNAILGYVQLMLRSTALSFDHRNN-- 423

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S   LL L+ND+L ++ ++AG M L  +   L  LL E+   +  K     +++
Sbjct: 424 LQIINDSGEHLLGLINDVLQMSKIEAGQMVLTETDFDLYHLLYELDTLLQLKASSKQLQL 483

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
             I D  +  ++  D ++L Q+   I+ NA+ F+ KG  + +K         F+V++ G 
Sbjct: 484 SFIRDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEKGG-ITVKVWCKGHQLFFAVQDTGQ 542

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            I  +  + +F+ F  + A      G GLGL I   FINL GG ++++S   EG T
Sbjct: 543 GIENEELEVLFSPFTQATAGIDSGEGTGLGLPISAKFINLMGGDITVNSRVGEGTT 598


>gi|39933394|ref|NP_945670.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39653019|emb|CAE25761.1| sensor histidine kinase with a response regulator receiver domain
           [Rhodopseudomonas palustris CGA009]
          Length = 636

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL    E+   A+  K+  +   S+E+R+PL  IIG + LL  + L   +++Q+ Y + 
Sbjct: 107 RALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPL---SAEQATYAKA 163

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL L +++LD A ++AG ++L+    VL+ L+ ++ + +A +     + I   
Sbjct: 164 VKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAAD 223

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSI 730
            D +L  S + D  RL Q+   +  NA+ F+  G   +I++    +G+    V++ G  I
Sbjct: 224 IDERLPVSLIVDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSGELRIIVRDTGIGI 283

Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             D    +F+ F   A  G  R   G GLGLSI +  +   GG +++ S     +T    
Sbjct: 284 APDAQARIFHEF-EQADAGIARNFGGTGLGLSISDRIVAAMGGRIALESKPGEGSTFTIT 342

Query: 788 IP 789
           +P
Sbjct: 343 LP 344


>gi|85708111|ref|ZP_01039177.1| sensory box histidine kinase/response regulator [Erythrobacter sp.
           NAP1]
 gi|85689645|gb|EAQ29648.1| sensory box histidine kinase/response regulator [Erythrobacter sp.
           NAP1]
          Length = 649

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 4/240 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R+E AL    E    A   K+ F+   S+ELR+PL  I+GF  LL+   L   +
Sbjct: 388 DMTERRRSEDALRLAREDAVAASLAKSEFLSRTSHELRTPLNAILGFGQLLEID-LEDFS 446

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + VE I+ +   LL+L+ND+LD+++++AG  +L Y  + +  +L EV       + 
Sbjct: 447 QPHQEAVERITRAGRHLLSLINDLLDISSIEAGGAELEYEEVDVAAMLEEVHDLAEPIVS 506

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFS 722
              +  ++         VADR+R+ Q+   ++ NA  ++ +GS V L A+ D +G   F 
Sbjct: 507 SAGLSFEMALPEAGAKVVADRRRMTQVILNLVGNAAKYNVEGSFVRLGASLDGDGAATFF 566

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  I       +F  F  +    R +  G GLGL++ +  +   GG +  S    G
Sbjct: 567 VEDDGPGIDPANASRLFTAFDRLGQHKRDKTEGTGLGLALSKGLVESMGGQIGYSPRKPG 626


>gi|291569174|dbj|BAI91446.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1009

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 18/246 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A   A+  K+ F+ ++S+ELR+PL  I+GFT LL+  +  +L +K  +Y++ ++ S   
Sbjct: 520 DAANVANRAKSEFLANMSHELRTPLNAILGFTQLLQRDR--TLAAKHQEYIKIVNQSGQH 577

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+ND+L+++ ++AG +  N +   +   L  ++  +  K     + +    +  +  
Sbjct: 578 LLGLINDVLEMSKIEAGRITCNPTEFAIKRCLQAIQVMLQLKAESKGLTLNFQVEESVPK 637

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNG----DFIFSVK 724
           FV  D  +L Q+   ++SNA+ F+ +G   +          L    DNG       F + 
Sbjct: 638 FVRTDESKLRQVLVNLISNAIKFTREGEVTLKVSVGQVDEDLGLFEDNGVSNTYLRFEII 697

Query: 725 NNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++G  I  +    +F  F  + + R  ++G GLGL I + F+NL GG + +SS     + 
Sbjct: 698 DSGCGIATEEINDLFQAFKQTQSGRESQQGTGLGLVISQRFVNLMGGEIQVSSELGHGSC 757

Query: 784 INCRIP 789
            + +IP
Sbjct: 758 FSFQIP 763


>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1179

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 189/446 (42%), Gaps = 79/446 (17%)

Query: 386 ETHKDTWH-LPNGQTLHVIVTSNPRGGTI-WM--------------FENLTVQVDLETKY 429
           E  ++ W  + NG+  H  V +  + G+  W+              ++ ++++ D+  + 
Sbjct: 348 EFFRELWQTVANGRVWHGQVKNRAKNGSCYWVEATVVPFMDQDGKPYQYVSMRTDITAQK 407

Query: 430 NTLVKVQGE------TIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE---NRLSPGT 478
              ++VQ E       +D L EGV +   DG     N     +  W  EE     L    
Sbjct: 408 AMELQVQSERRLLKSVMDTLGEGVYMLDQDGNCTYMNTEAEDIVGWTIEEVVGRNLHDLL 467

Query: 479 HI------RNIAATC---------------SRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           H+      R  A  C               + Y+   +G     AI+ S       + G 
Sbjct: 468 HVHRPDGTRVTADECPIRQSTMNKKVYHSEAEYFQHKNGTLFPIAIVAS-----PMIDG- 521

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            +L++ SV                F ++++    ER L    E+   A   K  F+  +S
Sbjct: 522 -DLITGSV--------------AAFQDISERKFTERELLRAKESAEAASRAKGDFLATMS 566

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+P+  IIG T+L   ++   ++++Q +Y+  + +S+  LL ++NDILD + +++G 
Sbjct: 567 HEIRTPMNGIIGMTELALDTE---MSAEQREYLNMVKSSADALLTIINDILDFSKIESGK 623

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696
           M+L      + +L    ++++A +  +  + +    DG +    V D  RL Q+ + +L 
Sbjct: 624 MELESVEFDVRNLFASAEKTLAIRAAQKGLELVYDVDGAIPDLLVGDPGRLRQVLTNLLG 683

Query: 697 NAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           NA+ FS  G+ T+ +K      D +     V + G  IP D    +F  F        R+
Sbjct: 684 NAIKFSEHGAITLRMKLLMQTSDGLCVRIEVADQGIGIPVDKLAHIFEAFTQADTSTTRK 743

Query: 753 --GVGLGLSIVESFINLHGGHVSISS 776
             G GLGL+I    +   GG +S+ S
Sbjct: 744 YGGTGLGLAISSKLVAAMGGDLSVES 769


>gi|239908296|ref|YP_002955037.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
            magneticus RS-1]
 gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
            magneticus RS-1]
          Length = 1516

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 11/250 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++TD  +A   L        +A+  K+ F+ ++S+E+R+PL  ++G   LL+++   SL+
Sbjct: 1117 DITDRRQATLDLELARFNAEEANRTKSEFLANMSHEIRTPLNGVLGMLQLLQST---SLD 1173

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q +Y      S   L  L++DILDL+ V+AG + +      L++ +N V +   T+  
Sbjct: 1174 VEQKEYSIAAVDSCIRLTRLLSDILDLSRVEAGKLGIQAVPFDLSETVNVVNELFKTQAI 1233

Query: 664  ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
            E+ I +    D  +    + D  RL Q+   ++ NA+ F+  G   +      + D    
Sbjct: 1234 ESGITLDFHIDQDIPKRLIGDAPRLQQVLCNLVGNALKFTHAGKIAVSSHLLPSSDPKRI 1293

Query: 719  -FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              +FS+ + G  IP D    +F  F  VS  +  + +G GLGLSI +  + L GG++SIS
Sbjct: 1294 SLMFSISDTGIGIPHDKIDLLFTPFTQVSEGYTRRHQGAGLGLSICKHLVTLMGGNISIS 1353

Query: 776  SSDEGVTTIN 785
            S     TT+N
Sbjct: 1354 SVLGQGTTVN 1363


>gi|258623855|ref|ZP_05718809.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM603]
 gi|258583844|gb|EEW08639.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM603]
          Length = 785

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 23/253 (9%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725
            +     L S V  D  RL Q+   ++SNAM F+ +G  V+  +A     + D    V++
Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQHADITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFVS------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            G  IPE+  + +F  +        N H     G G+GL++    I L GG +S+ +S+E
Sbjct: 441 TGIGIPEEEQEKIFAMYYQVKPGKDNLH---AVGTGIGLAVSRQLIKLMGGDISV-NSEE 496

Query: 780 GVT---TINCRIP 789
           G     T+  R+P
Sbjct: 497 GFGSTFTVTIRVP 509


>gi|291287330|ref|YP_003504146.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884490|gb|ADD68190.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 993

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 129/245 (52%), Gaps = 21/245 (8%)

Query: 553 RALTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L +++E L+K       A+  K++F+ ++S+E+R+PL +I+GF+DLL  S    +N+ 
Sbjct: 361 RKLLDQSEQLQKLAVDAEEANIAKSAFLANMSHEIRTPLNSIMGFSDLLCAS---DINAN 417

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y   IS S+  LL+++NDILD++ +++G ++L      LN +L+ V + I+ +  E 
Sbjct: 418 DKEYALTISQSARSLLSIINDILDISKIESGKVELFKEEFDLNLMLDYVIKMISVRASEK 477

Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDF 719
           +I      D  +    + D +R+ Q+   +L NA+ F+ KG  + L       A D  D 
Sbjct: 478 DINFLFYCDTNIPAKLIGDSERIQQVLMNLLGNAVKFTEKGGEIRLSVFMADKADDTVDV 537

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            F V + G  I E     +F  F   A  G  R   G GLGL+I    +++    + + S
Sbjct: 538 RFEVHDTGIGISEAAVAHIFEPF-HQADAGINRKYGGTGLGLTICNKILHIMESEIRVYS 596

Query: 777 SDEGV 781
           S EGV
Sbjct: 597 S-EGV 600


>gi|302384308|ref|YP_003820131.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194936|gb|ADL02508.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
          Length = 694

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 10/217 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+ELR+PL  II  T+LL+  +    +S+  +    I +S   L  +V
Sbjct: 313 ANAAKSQFLANMSHELRTPLNGIIAMTELLRDHQT---DSRGREMAATIISSGHTLEYVV 369

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           NDILD+A ++AG+++   +   L+DLL    Q          I +++ I D   G +  D
Sbjct: 370 NDILDVAKIEAGLLQFEAAPFDLDDLLKAATQLHGAAAAAKGITLRLTIHDDASGVYRGD 429

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNR 741
           R R+ Q+ S ++SNA+ F+  G   +   AR +GD     SV + G          +F R
Sbjct: 430 RTRVSQVISNLISNAVKFTETGGVQV--TARRHGDRELCLSVSDTGVGFDRATAARLFQR 487

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F        RR  G GLGL+I  S   + GG V++ S
Sbjct: 488 FEQADVSVSRRYGGTGLGLAICASLTEIMGGRVTVRS 524


>gi|260223358|emb|CBA33843.1| hypothetical protein Csp_B21070 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 538

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 116/220 (52%), Gaps = 10/220 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+ELR+P   ++G   LL+++    L + Q+ Y++    S+  LL L+
Sbjct: 128 ANRGKSQFLANMSHELRTPFNGMLGMMSLLEST---PLTTAQTDYIKTAKGSANHLLTLL 184

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD++ +++G M LN   + L  LLNEV   +     E  ++  ++   +L ++V AD
Sbjct: 185 NDILDVSALESGKMTLNPEPVQLPALLNEVNALMHPLAVEKQLKFSIVVQAELPAWVLAD 244

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
             RL QI   +++NA+ F+  G   +   +R   D      F V++ G  + + +   +F
Sbjct: 245 ATRLKQILFNLVNNALKFTDHGGVTLTIVSRPRTDGNTGLAFLVEDTGIGMDDHVLSRLF 304

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            RF  V      +  G GLGL I ++   + GG + + S+
Sbjct: 305 QRFYQVDGGLARKFGGTGLGLEISQTLARMMGGAIEVEST 344


>gi|134293593|ref|YP_001117329.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134136750|gb|ABO57864.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 664

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL        +++ +K+  +  VS+ELR+PL  I G+ ++L++   G   ++Q+  ++ 
Sbjct: 268 RALRGARVQADQSNRLKDELLSTVSHELRTPLNVIYGWVEVLRSVD-GQAFAQQA--IDA 324

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  L  +V D+LD +++  G  +L  + + L  ++ +  + +      N I +   
Sbjct: 325 IDRSARSLSRMVGDLLDASSLATGRTRLERAPVDLVRIVRDAVRELGGSADANGIALS-- 382

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +D  L + V  AD +RL Q+ S +LSNA+ F+  G  + +  AR       +V + G  I
Sbjct: 383 TDCALTNCVISADGERLRQVLSNLLSNAIKFTPSGGRITVSLARAGARVRMAVTDTGHGI 442

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787
             +    +F+ F     A    +RG+GLGLSIV + + LHGG V+ SS   G+ TT+   
Sbjct: 443 SAERLPHLFDTFNRPEGAAASPKRGLGLGLSIVRNIVRLHGGDVAASSPGAGLGTTVTVT 502

Query: 788 IP 789
           +P
Sbjct: 503 LP 504


>gi|37519602|ref|NP_922979.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35210593|dbj|BAC87974.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 692

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+   S+ELR+P+  II  TDLL  S LG+   +Q +    I      +L+L+N+IL
Sbjct: 315 KSDFLAAASHELRTPMHGIISMTDLLLESDLGA---EQRELAAIIGYCGETMLSLINNIL 371

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           D++ ++AG M+L+     L  L++ V    A ++   ++R++V+ D ++      D  RL
Sbjct: 372 DISKIEAGRMELDVVPFELPRLIDSVVAMFAEQLRSKDLRLQVLIDPEVPAQLEGDPVRL 431

Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFV 743
            Q+ + ++ N++ F+ +G   I +  A   GD +   F V + G  +  +    +F  F 
Sbjct: 432 AQVLTNLVGNSLKFTPRGQIAIRVHPAAQGGDDLRLRFEVVDTGIGMAPETTGRLFQSFF 491

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  R+  G GLGL+I    + L GG + + S  E  +T    +P K
Sbjct: 492 QADTSTTRKYGGTGLGLAISRQLVELMGGQIGVESRLEQGSTFWFVLPLK 541


>gi|323706234|ref|ZP_08117801.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534398|gb|EGB24182.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 473

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 5/233 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620
           L + D  +  FV +VS+ELRSPL+ I G+ D +     G++ +++S+ Y+E     +  +
Sbjct: 241 LGRMDNARKEFVANVSHELRSPLSTIQGYIDGVVD---GTIPAEKSKFYLEIAQKETRRM 297

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L++++LD+  +++G   LN S   +N+L+      +  ++ + ++ +KV  +      
Sbjct: 298 SRLISELLDITKMESGAFPLNISEFDINELIRLTIIKMEARISDKDLMVKVDFESDKEIV 357

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD+ ++ Q+ + ++ NA+ FS+ G  + +   +        V+N G +IP D    +++
Sbjct: 358 EADKDKIEQVLTNLIDNAIKFSNPGGYIHVSTEKVKEKVHVRVQNKGKTIPPDEIDHIWD 417

Query: 741 RFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF   +  R    GVGLGL IV S INLH   +  +SSD   TT    + SK+
Sbjct: 418 RFYKVDKARSGSPGVGLGLYIVRSIINLHNEDIWATSSDADGTTFTFTLKSKK 470


>gi|94499808|ref|ZP_01306344.1| putative sensor protein [Oceanobacter sp. RED65]
 gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65]
          Length = 938

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 132/243 (54%), Gaps = 13/243 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++  ++ +  + +  E   +A + K+ F+ ++S+E+R+P+  ++G   L++ SK   LN
Sbjct: 402 DISYEIQNKTKMIQAKEQAERATQAKSEFLANMSHEIRTPMNGVLGMLKLVRKSK--GLN 459

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL--LNEVKQSIATK 661
             Q   +     S+  LL ++NDILD + ++AG  K+N  TI  N L  ++++ +S+A  
Sbjct: 460 RDQLHQINLAHTSAESLLVVINDILDFSKIEAG--KINLETIDFNLLEWISDISESLAFH 517

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
            H+ +I + + ISD    + + D  R+ Q+ S ++ NA+ F++ G   I L    +  + 
Sbjct: 518 AHKKDIDLSLDISDVTYFNLIGDPNRVRQVISNLVGNAIKFTNDGWVKIKLSTKPEKSNL 577

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           I    S+K+ G  I ED    +F+ F    N+   Q  G GLGL+I +    + GG V++
Sbjct: 578 IKLSCSIKDTGIGIAEDRLDKLFSAFEQADNSTTRQYGGTGLGLAIAKKLCEIMGGDVTV 637

Query: 775 SSS 777
           SS+
Sbjct: 638 SST 640


>gi|316941685|gb|ADU75719.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 387

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 14/241 (5%)

Query: 552 ERALTEKNEALR----------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKL 599
           +R L EKNE +R          K+   K+ F  ++S+EL++PL+ I+G   L+  K    
Sbjct: 99  QRELEEKNELIRNLTSLYEKTIKSSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLD 158

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G+   K ++++  I  +   LL L+N+ILD++ +D+G +K N     +  L+ ++  S+ 
Sbjct: 159 GNDRRKSTRHLITIKQNCYRLLRLINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVI 218

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             + +  + ++  +  +      D  ++ +I   +LSNA+ F++ G  + +K A+     
Sbjct: 219 PYVEQKGLTLEFDTLEEEIITAVDVDKIERIILNLLSNAVKFTNPGGKITVKVAKKFNKV 278

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I  VK+ G  IP++M  ++F R+  V N    +  G G+GLSIV+SF+ LH G + + S 
Sbjct: 279 IIKVKDTGIGIPKNMQAAIFERYRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSK 338

Query: 778 D 778
           +
Sbjct: 339 E 339


>gi|121705970|ref|XP_001271248.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
 gi|119399394|gb|EAW09822.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
          Length = 2333

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 37/267 (13%)

Query: 552  ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL +  EA +KA                  + K+ F+ ++S++LR+P+  +IG ++LL
Sbjct: 1854 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1913

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   +LN +Q +YVE I   +  LL L+NDILD + ++AG MK++   + + + ++EV
Sbjct: 1914 KGT---NLNKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEV 1970

Query: 655  KQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708
             +++     +  +       KV  D  +   + D  RL QIF  +LSN+  F+ KGS TV
Sbjct: 1971 VRALRYTHRDRGLETIEDLDKVPPDLVV---LGDPVRLHQIFMNLLSNSYKFTPKGSITV 2027

Query: 709  ILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVE 762
              K +R+    +    +V + G  IPE+    +F  F S A     R   G GLGLSI +
Sbjct: 2028 RAKVSREGKGRLRLECAVSDTGIGIPEEQKSRLFKPF-SQADSSTARSYGGSGLGLSICK 2086

Query: 763  SFI-NLHGGHVSISSSDEGVTTINCRI 788
            + I ++ GG + + S+    TT+  R+
Sbjct: 2087 AIIEDVLGGAIWLDSTPGVGTTVTFRL 2113


>gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
 gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
          Length = 1390

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 7/245 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQ 606
           S R+  A   + E L + D  K +F  ++S+E R+PLT I+G   ++L+TS+L   + + 
Sbjct: 331 SARSYGAQQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSEL---DVRV 387

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E    +   L  LVN +LD + + AG M+  +  + L  +  E+     + +    
Sbjct: 388 REELELAHRNGLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAG 447

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +   V           DR    ++   +LSNA+ F+ +G+ V ++   D+G  + +V + 
Sbjct: 448 LEFTVDCPPLAEPVYVDRDMWEKVVLNLLSNALKFTREGA-VTVRVTADDGVAVVTVADT 506

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE     +F RF  V         G G+GL++V+  I LHGG +   S + G TT 
Sbjct: 507 GVGIPEAEMPRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGGGTTF 566

Query: 785 NCRIP 789
             ++P
Sbjct: 567 TIQMP 571


>gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
 gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
          Length = 2109

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            +  ++T+    E A   ++EA    +E K+ F+  +S+E+R+P+  I+G   L+K    G
Sbjct: 1591 SLTDITERKAKEAAEQARHEA-EAENEAKSMFLATMSHEIRTPMNGILGMAQLMKQ---G 1646

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             LNS+Q++ ++ I  +   LL+++N+ILD + +++G ++L     ++ D+++E+      
Sbjct: 1647 QLNSEQNEQIDTIYNAGQTLLSILNNILDYSKIESGQLELEEKPFLIQDVMDEIYNLFKP 1706

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
               E +++I    +  L +   D + L QI   + SNA+ F+ +G   I    L   +D 
Sbjct: 1707 VAQEKSLQIVPNIERTLPAVSGDPRVLSQILMNLCSNALKFTHQGYIRISCEGLPDTQDK 1766

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F++++ G  IPE     +F  F        RR  G GLGL+I    I    G +  
Sbjct: 1767 LKTRFTIEDTGIGIPEKAQSRIFQHFTQADSSITRRYGGTGLGLAITRQIIERLNGEIGF 1826

Query: 775  SSSDEGVTTI 784
             S++E  TT 
Sbjct: 1827 ESTEEQGTTF 1836


>gi|329847432|ref|ZP_08262460.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842495|gb|EGF92064.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 504

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 5/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F + +S+E+R+PL  ++G  DL+  +    L+  Q+ Y+     S   LL LVND+L
Sbjct: 22  REDFFRLMSHEIRTPLNGLMGMLDLMAKT---PLSPDQNSYLTTARHSGEHLLTLVNDLL 78

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D A +DAG ++L    + L  LL  V + ++ + H N+I I    D +L    AD  RL 
Sbjct: 79  DYARIDAGRIELETGEVHLEPLLQSVAELLSPRAHANHIEIAWSLDPRLDFIQADEGRLR 138

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           QI   +  NA+ F++ G  +I     D+    FS+++ G  IP +  + +F  +  V   
Sbjct: 139 QILFNLAGNAIKFTATGGVLIQVGLTDDDLIRFSIRDTGPGIPPEARERIFEEYGQVHPT 198

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           H  +  G GLGL +V+  + +  G +S+ S
Sbjct: 199 HATRYGGAGLGLVVVKKLVEVMDGTLSLES 228


>gi|315127393|ref|YP_004069396.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
 gi|315015907|gb|ADT69245.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
          Length = 924

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 12/231 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYI 613
           LT   +  + A+ +K+ F+  +S+ELR+PL  +IGFT  L KT     LN  Q  Y++ I
Sbjct: 276 LTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTP----LNKNQKDYLDTI 331

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L+ +++DILD + ++AG M+L      L D +NEV   +A   H+  + + +  
Sbjct: 332 ELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYI 391

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           + ++      D  R  Q+   +LSNA+ F+ KG+  +  + R    +    + SV + G 
Sbjct: 392 NPQVPDHLTGDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSVLVSVADTGV 451

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            IP D   ++F  F        R+  G GLGL I +  +    G ++++S+
Sbjct: 452 GIPADKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSA 502


>gi|220919355|ref|YP_002494659.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219957209|gb|ACL67593.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1847

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 124/248 (50%), Gaps = 11/248 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A R+L EK E L+     K+ F+ ++S+ELR+PL +++  + +L  ++ G+L  +Q ++ 
Sbjct: 1436 ASRSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVKFA 1495

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              +  S   LL L+N+ILDL+ ++AG M +      L  + ++++Q+         +  +
Sbjct: 1496 STVYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLEAVRDDLEQTFRHVAEHKGLGFQ 1555

Query: 671  VISDGKLGSFVADR-----QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            V    ++G  + +R      RLLQI   ++SNA  F+ +G  V+       G   F+V++
Sbjct: 1556 V----RMGPDLPERIHTDPTRLLQILKNLISNAFKFTERGEVVLDVGPAAGGALAFAVRD 1611

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  I  D  K +F  F        R+  G GLGL+I      L GG + + S+    + 
Sbjct: 1612 TGIGIAADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSV 1671

Query: 784  INCRIPSK 791
                +P++
Sbjct: 1672 FTLVLPAR 1679


>gi|68299595|dbj|BAE02741.1| two-component regulatory system sensor kinase GacS [Pseudomonas
           fluorescens]
          Length = 917

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   ++ +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MSPRQLDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731
            L + V D  RL QI + ++SNA+ F+ +G+ V    I     D+     SV++ G  + 
Sbjct: 391 PL-ALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLS 449

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 450 NQDVRALFQAFSQADNSLSRQPVGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|298386496|ref|ZP_06996052.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298260873|gb|EFI03741.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 785

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 136/268 (50%), Gaps = 13/268 (4%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +L  +  ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  
Sbjct: 384 ALVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNA 443

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL +++      ++  Y   I+ +S ILL L+NDILDL+ ++AG ++     + 
Sbjct: 444 IVGFSNLLPSAETL---EEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMN 500

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSK 704
           L ++   + Q    ++ E    + +I D +    +   DR R+ Q+ +  L+NA  F+  
Sbjct: 501 LGEVCRNIYQIHKDRVQEG---VTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLS 557

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G  +      DN    F VK+ G  I  D    +F+RFV      Q  G GLGL+I    
Sbjct: 558 GE-IRFGFKVDNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSFAQ--GTGLGLAICRMI 614

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           I   GG +  +S     +T    IP KE
Sbjct: 615 IEKIGGEIGATSEVGKGSTFFFTIPYKE 642


>gi|327394559|dbj|BAK11981.1| sensor kinase protein RcsC [Pantoea ananatis AJ13355]
          Length = 880

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L  
Sbjct: 374 LVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQLP- 432

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             S     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +  + 
Sbjct: 433 --SGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSL 490

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +   I      +   D  RL Q+ S +L+NA+ F+  G  +IL A    G   
Sbjct: 491 VVKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVTQGYLA 549

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F  ++ G  IP      +F+ F    +  QR  +G GLGL+I E  IN+  G + + S  
Sbjct: 550 FRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEP 609

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 610 GMGSQFIVRIP 620


>gi|299139603|ref|ZP_07032777.1| histidine kinase [Acidobacterium sp. MP5ACTX8]
 gi|298598531|gb|EFI54695.1| histidine kinase [Acidobacterium sp. MP5ACTX8]
          Length = 709

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 4/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  + LRK  ++K SF+ ++S+E R+PL +I   + LL     G L+ +Q + V YI 
Sbjct: 208 LEQHADDLRKVSDLKTSFLSNLSHEFRTPLNSISSLSRLLLGRTDGELSEEQEKQVTYIQ 267

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S++ L  LVND+LDLA V+AG + +      +ND    ++  +   +  N++ +   + 
Sbjct: 268 HSASELSELVNDLLDLAKVEAGKIDVKPRHFEVNDFFGALRGMLKPLLAGNSLELIFDAA 327

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733
             L +   D  ++ QI   +++NA+ F+ KG   +     D G   F V + G  I PED
Sbjct: 328 ADLPTLYTDEGKVSQILRNLIANALKFTRKGHIRVTAEIEDGGWVAFRVADTGIGILPED 387

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +F  F  +    + Q +G GLGL +      L GG +++ S     +T   RIP+
Sbjct: 388 QER-IFEEFTQIEGEMQSQVKGTGLGLPLSRRLAELLGGSLNVESESGQGSTFTARIPA 445


>gi|288941100|ref|YP_003443340.1| signal transduction histidine kinase with CheB and CheR activity
            [Allochromatium vinosum DSM 180]
 gi|288896472|gb|ADC62308.1| signal transduction histidine kinase with CheB and CheR activity
            [Allochromatium vinosum DSM 180]
          Length = 1994

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 133/242 (54%), Gaps = 10/242 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++T   + E+AL+E  +    ++  K++F+ ++S+E+R+P+  ++GF  LL+     +L
Sbjct: 1214 IDITALKQVEQALSEARDQANASNLAKSAFLANMSHEIRTPMNAVLGFCYLLEQR---AL 1270

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +   +  V  I  +   LL L+NDILD + ++AG +++  +   L++LL+ +   +    
Sbjct: 1271 DPTSADLVRKIHGAGQALLGLINDILDFSKIEAGHLEIESTPFQLSELLDTLAGIMTAAA 1330

Query: 663  HENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
             +  + + +   G+ +   + D  RL Q+   +L NA+ F+++G   + ++   ++GD +
Sbjct: 1331 GDKPLELVLTPPGEGIEGLIGDAGRLQQVLINLLGNAIKFTARGEVELRVEQVAEHGDRL 1390

Query: 721  ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F+V++ G  I  +   ++FN F    +   RR  G GLGL+I +  +++ GG + + 
Sbjct: 1391 DLRFTVRDTGIGIAPEHQTNIFNAFSQADNSIGRRFGGTGLGLAISQRLVHMMGGRLELE 1450

Query: 776  SS 777
            S+
Sbjct: 1451 ST 1452


>gi|7547007|gb|AAF63755.1|AF243474_1 putative ethylene receptor [Vitis vinifera]
          Length = 741

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 136/264 (51%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS++L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 375 ---TPEQRLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + +       L  F V D +RL+QI   ++ NA+ FS++G+  I       ++
Sbjct: 432 PIASVKKLFVSSSLAPDLPEFAVGDEKRLMQIMLNVVGNAVKFSNEGNISIFAFIAKSES 491

Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD+   DF              VK++G+ I P+D+ K +F +F        R   G GL
Sbjct: 492 LRDSRAPDFFPVHSDNHFYLRVQVKDSGAGIDPQDISK-LFTKFAQCQSLAARNSGGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL GGH+ I S   G
Sbjct: 551 GLAICKRFVNLMGGHIWIESEGLG 574


>gi|292491538|ref|YP_003526977.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580133|gb|ADE14590.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 366

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 8/252 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ++AL  + + L +++     F    S++L+ PL  +  +  LL     G L+
Sbjct: 119 DITERKEIQKALERQTQELTRSNTELEQFAYVASHDLQEPLRMVSSYAQLLARRYRGQLD 178

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S   +++E++   +T +  L+ND+L  + V  G     ++T   N ++ +V +S+   + 
Sbjct: 179 SDADEFIEFMVDGATRMQALINDLLAYSRV--GTKGKPFTTTDGNQIIQQVLESLRFVIE 236

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFS 722
           E +  + V     L   +ADR +L+Q+F  ++SNA+ F  + +  I   A++ GD  IFS
Sbjct: 237 ETHAHLTV---DPLPVLIADRAQLVQLFQNLISNALKFRGEETPKIHINAKEEGDQVIFS 293

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGV 781
           V +NG  I     + +F  F     + +  G G+GLSI +  +  HGG + + S  DEG 
Sbjct: 294 VADNGIGIEPQYAERIFLLFQRLHTKKEYPGTGIGLSICKKIVERHGGQIWLESKPDEGT 353

Query: 782 T-TINCRIPSKE 792
           T      +P+KE
Sbjct: 354 TFFFTLPLPAKE 365


>gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 806

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 129/249 (51%), Gaps = 10/249 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ L +  +    A  +K  F+ ++S+E+R+PL  I G   LLK +   SL+ +Q +Y
Sbjct: 417 KTEQELVKARQEAEAASRVKTEFLANMSHEIRTPLNGIAGMLQLLKET---SLDMEQKEY 473

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+    SS  L  L++DILDL+ ++AG M ++       +L + V +  A      ++ +
Sbjct: 474 VDLGIKSSHRLTRLLSDILDLSRIEAGHMTIHQEEFDPLELCSSVNELFAVTTRNKHLSL 533

Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVK 724
           + I  +G     V D  R+ QI   ++ NA+ F+ KG   +   L A  D    +  +V+
Sbjct: 534 ECIFQEGFPSRLVGDEARIQQILFNLVGNALKFTEKGGVQVSWSLYAGDDTEQQVRITVQ 593

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + +++ + +F  FV   N++  + +G GLGLSIV+  + L  G++S+ S     +
Sbjct: 594 DTGIGMEQEVLQELFKPFVQAENSYTRKYQGAGLGLSIVKRLVELMHGNISVKSVPGQGS 653

Query: 783 TINCRIPSK 791
           T    +P K
Sbjct: 654 TFYVDLPLK 662


>gi|89093729|ref|ZP_01166676.1| sensor histidine kinase with a response regulator receiver domain
           [Oceanospirillum sp. MED92]
 gi|89082125|gb|EAR61350.1| sensor histidine kinase with a response regulator receiver domain
           [Oceanospirillum sp. MED92]
          Length = 1144

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + +R L E  E   +A+E K+ ++  +S+ELR+PL +I+G+  LL   +   + S Q + 
Sbjct: 668 QTDRELQEAKEQAERANEAKSRYLTGISHELRTPLQSILGYAQLLSEKE--EVASDQKRG 725

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S   L +L+  +LD++ ++AG + L  + + L +L++++ +    +  + ++ +
Sbjct: 726 LKIIHRSGQYLTDLIEGLLDISKIEAGRLDLFRNQVNLPELIDQMVEMFRVQADKKSLVL 785

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               DG+L  +V  D +RL QI   +LSNA+ ++ KG  V       N    F V++ G 
Sbjct: 786 NFTLDGRLPDYVMTDEKRLRQILINLLSNAIKYTDKGK-VDFHIRYRNQVAEFVVRDTGP 844

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I ++    VF  F  V N+    R G GLGL+IV+    + GG + + S
Sbjct: 845 GIEKENLDRVFQPFERVRNSSNAHRPGTGLGLTIVKLLTEIMGGDLQVKS 894


>gi|293369483|ref|ZP_06616064.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635435|gb|EFF53946.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 642

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 5/233 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q  
Sbjct: 399 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQQS 456

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     ++ +
Sbjct: 457 YYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSDNQ 516

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727
               +  +    V D QR+ Q+   +LSNA  F+ +G  T+      +    IFSV + G
Sbjct: 517 FLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTDTG 576

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             IP++    VF RF       Q  G GLGLSI +  ++   G + I     G
Sbjct: 577 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 627


>gi|172039492|ref|YP_001805993.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700946|gb|ACB53927.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1195

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 16/249 (6%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+   A+ AL +  E    A+  K+ F+ ++S+E+R+P+  I+GF DLL      
Sbjct: 687 TITDITEKKVAQEALKKAKEIAEVANNAKSEFLANMSHEIRTPMNAILGFCDLLDKR--- 743

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + +   Y+E +++   +LL+L+NDILDL+ +++G +++ +  I L  L+ E+KQ    
Sbjct: 744 ITDERSRHYLESVASGGKMLLSLINDILDLSKIESGKIEIIHEPIDLRGLIFEIKQMFVE 803

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
              E NI + V I++      V D  RL QI   ++ NA+ F+ KG   I +K+     D
Sbjct: 804 TAKEKNIELLVNINNQVPDVIVFDEVRLRQILFNLVGNALKFTEKGYVKISVKSQLLPSD 863

Query: 719 ---------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                       S+++ G  I  D  K VF+ F  +  +  R+  G GLGL+I      +
Sbjct: 864 KNHHPSYCSLEISIEDTGIGIALDQRKRVFDVFTQSEGQSNRKYGGTGLGLTITNRLTEM 923

Query: 768 HGGHVSISS 776
             G + + S
Sbjct: 924 LKGIIDLES 932


>gi|58338067|ref|YP_194652.1| two-component sensor histidine kinase-like protein [Lactobacillus
           acidophilus NCFM]
 gi|227902755|ref|ZP_04020560.1| sensor histidine kinase [Lactobacillus acidophilus ATCC 4796]
 gi|58255384|gb|AAV43621.1| two-component sensor histidine kinase homolog [Lactobacillus
           acidophilus NCFM]
 gi|227869418|gb|EEJ76839.1| sensor histidine kinase [Lactobacillus acidophilus ATCC 4796]
          Length = 381

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++ K+  + +VS+++R+PLT+IIG+  LLKT    S    Q +YV+     +  + +
Sbjct: 148 RAIEKSKDELITNVSHDIRTPLTSIIGYLGLLKTGI--SSKEDQQKYVDIAYTKAEQMKS 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L +D+ +  T+ +   KLN + + +  +L +V      +  +  I I++ +  K  +  A
Sbjct: 206 LADDLFEYTTLKSTSTKLNLNELHIYSMLEQVAAGFELEAEKKGIDIEIEARPKNLTIQA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++++ ++SNA  + +  + + L A   N   +   V+NNG  IP    K +F+R
Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKSEVELRVENNGEPIPVSAQKKIFDR 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGLSI +S ++LH G +    SDE  T+   R+P
Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKSVVDLHHGTIR-CQSDENWTSFIIRLP 374


>gi|330969015|gb|EGH69081.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 1188

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 14/258 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+  + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 669 WIDITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 727

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L    SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L + V +  + +
Sbjct: 728 LGMMPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLRGLFDGVIELFSAQ 787

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  + +++ +S    G +  D  RL Q+   +L NA+ F+ +G+ V+ L    D+ D 
Sbjct: 788 AREKGVELRLELSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVRLDVTSDSPDS 847

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                 ++++G  I     + VF  F      + AH G   G GLGLSI    + L  G 
Sbjct: 848 TRVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYG---GSGLGLSITRQLVALMKGD 904

Query: 772 VSISSSDEGVTTINCRIP 789
           +S+ S     T +   +P
Sbjct: 905 ISLHSEPGKGTLVTIDLP 922


>gi|320353526|ref|YP_004194865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122028|gb|ADW17574.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 930

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 36/360 (10%)

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA-----ATCSRYYNESDGWDLFAAIITS 506
           P G +   +P +  L   E + +  G H R I      A C  +Y E   W+        
Sbjct: 324 PHGVVTYVSPGYTKLLGHEPDHIV-GKHFREIVHPDDVALCEDFYREV--WE-------- 372

Query: 507 FDDERKSLQGTLELLSDSVLEY--SIIPLPNAQTML-TFV----NVTDSVRAERALTEKN 559
             + R+ L+  +     S+  +  + IPL N +  + +FV    ++T+  + +  L    
Sbjct: 373 HGEIRRGLEYRIPHRDGSIRWHLSNFIPLTNEEGEIESFVGNAMDITEQKQHQAELQAAR 432

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA   A   K+ F+  +S+E+R+PL  I+GF+ L + +  G    +  +YV+ +  SS +
Sbjct: 433 EAAEAASRAKSDFLALISHEIRTPLNAIVGFSALARRTADGV---QLREYVDILDQSSRL 489

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L++LVND+LD++ V+AG ++L      L + ++ ++   A       +  +VI +  L  
Sbjct: 490 LMDLVNDVLDMSKVEAGQLQLESIPFNLPEAVDLLQWQFAPVAARKQLDFQVIREETLPP 549

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNNGSSIP 731
           ++  D  R  QI S +LSNAM F+  G  ++   A+D    +         V++ G  I 
Sbjct: 550 WIQGDPIRFRQIASNLLSNAMKFTESGCVLLRVTAQDQAPGVEGRCLVRLEVRDTGIGIE 609

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                S+F  F        R+  G GLGL+IV   + L  G V ++S+    ++    +P
Sbjct: 610 ARQIASLFQPFQQLDPGISRKYGGTGLGLAIVHRLVELMQGRVEVASTPGTGSSFTVELP 669


>gi|296268467|ref|YP_003651099.1| histidine kinase [Thermobispora bispora DSM 43833]
 gi|296091254|gb|ADG87206.1| histidine kinase [Thermobispora bispora DSM 43833]
          Length = 560

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 6/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK+  LR+  E +  F   VS+ELR+PL +IIG   LL       L+ +Q   +  I 
Sbjct: 193 LEEKSARLRELAEARQRFWVSVSHELRTPLNSIIGLVRLLLGPGGEPLSEEQEHQIRLIG 252

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVIS 673
           +S+  LL +V+++LD+A  ++G ++     + +  L  EV  ++     H   + + V +
Sbjct: 253 SSAETLLAMVSELLDMAKAESGRIQPQPVAVDVAALAEEVCTALRPAAPHRVALIVDVAA 312

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPE 732
           D  +G   AD+  L +I   +L NA+ F+ +G   + ++   D GD +F+V + G  IP 
Sbjct: 313 D--VGEMFADKAILARILHNLLYNALKFTYEGEVRLSVRLDPDAGDVVFTVADTGIGIPA 370

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              + VF  F  V      +  G GLGL          GG ++++S +   TT   R+P 
Sbjct: 371 KYLERVFEEFFQVPGPVAVKAEGSGLGLPYARRLAEALGGTLTLTSREGEGTTATLRVPR 430

Query: 791 K 791
           +
Sbjct: 431 R 431


>gi|256376492|ref|YP_003100152.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255920795|gb|ACU36306.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 722

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 168/365 (46%), Gaps = 43/365 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP----GT----HIRNIAATCSRYY 491
           ++ L+ GV  F   GR+  +N A  S    +   LSP    GT    H+R I AT  R+ 
Sbjct: 365 VNVLNVGVVQFDERGRVDHANAAALSWLGID---LSPSAVAGTLLQQHLRPIGAT--RHP 419

Query: 492 NESDGWDLFAAIIT--SFDDERKSLQGTLELLSDSVLEYSIIPL----PNAQTMLTFVNV 545
            E         II+  + D+E   + G LELL    +EYS  P+         +L   +V
Sbjct: 420 VEQ--------IISEGAVDEE---ITGELELLDGRAVEYSYQPVGLGDERVGALLVMQDV 468

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+ V A+R L   NE L +   ++  FV  +S+ELR+PLT +     LLK     S    
Sbjct: 469 TERVAAQRVLELSNEELTRLVALRTEFVSSMSHELRTPLTVVASSAALLKEESEDS-GGV 527

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             Q  + I  +++ LL++V D++DLA ++ G +  ++S   +  LL  V + I  +  + 
Sbjct: 528 HGQLADAIERNASRLLSVVEDLVDLARLEGGAVTADHSPANITALLGGVMRRIDDRASDR 587

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +R+ V S+ +  + + D +RL+ +    LS A+  S++G +V +      G ++  V +
Sbjct: 588 GVRLVVSSEKEAVTVLGDAERLVTMLDYALSAAIGISTEGESVTVSTGVRQGRWVLDVLD 647

Query: 726 NGSSIPEDMCKSVFNRFVSNAH-----RGQRRGVGLGLSIV--ESFINLHGGHVSISSSD 778
                P  +  S    + + A      R  R  V  G+S V   +    HGG + +   +
Sbjct: 648 -----PRPLQASGSRMYSAIARLGRWGRADRTAVSTGVSTVLARAIAEWHGGAIEVFGVE 702

Query: 779 EGVTT 783
           +G  T
Sbjct: 703 DGTVT 707


>gi|254524346|ref|ZP_05136401.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219721937|gb|EED40462.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1167

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 10/238 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A + K+ F+  + +E+R+P+T ++G ++LL  + L   +  Q  Y   I  + 
Sbjct: 789  KQELAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPL---DPVQRSYAGSIQQAG 845

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--G 675
            + LL LVND LDLA ++AG ++L+     L  LL++V+  +     +  +  +  +D  G
Sbjct: 846  SHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQVLMQPMAKQRRLEFQRGNDPQG 905

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734
             + S   D  R+ QI   +L NA+ F+ +G   +     DNG  + F V ++G  I  + 
Sbjct: 906  PI-SVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLEDNGGGVCFEVYDSGPGINAEQ 964

Query: 735  CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F+RF  ++  R   R  G GLGL+I +      GG + + SS         R+P
Sbjct: 965  QERLFHRFEQADGPRTASRYGGSGLGLAICQELAVAMGGRIDVESSPGKGARFRVRLP 1022


>gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 709

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 9/236 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+ IK+ F+  +S+ELR+PL  I+G+  LL+T +L     K++  +E I  ++ 
Sbjct: 335 REAAETANRIKDEFLAVLSHELRTPLNPILGWIKLLRTHQLS--EEKKAIALETIERNAK 392

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGK 676
           +   L+ D+LD++ +  G + LN S++ L   +    +++A      +I+I  ++  D +
Sbjct: 393 LQTQLIADLLDVSRILQGKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIAPDVQ 452

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L  F+ D  RL Q+   +L+NA+ F+  G  V +K    N      V + G  I  +   
Sbjct: 453 L--FMGDASRLQQVVWNLLTNAVKFTPTGGEVKIKLESTNTYTQIQVSDTGKGITPEFLP 510

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIP 789
            VF  F        R+  G+GLGL+IV   + +HGG V   S  E    I   R+P
Sbjct: 511 YVFETFRQADSATTRKFGGLGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLP 566


>gi|304309740|ref|YP_003809338.1| predicted histidine kinase [gamma proteobacterium HdN1]
 gi|301795473|emb|CBL43671.1| predicted histidine kinase [gamma proteobacterium HdN1]
          Length = 895

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 12/233 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYV 610
           E+ + E+   L KA++ K+ F+ ++S+E+R+P+  ++G T+LL    LG+ LN++Q QY 
Sbjct: 357 EQKVEERTRKLEKANQAKSEFLANMSHEIRTPMNGVLGMTELL----LGTELNTRQQQYT 412

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S+  LL ++NDILD + ++AG ++L      L  L+++     + K  +  I++ 
Sbjct: 413 RTIHNSALSLLGIINDILDYSKIEAGKLELESVPFNLEILVDDCTAIFSLKCAQKPIQLT 472

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
             I+ G     V D  RL QI   +  NA  F+ KG   I    L+         FS+++
Sbjct: 473 SRIAPGTPIDLVGDPTRLRQILINLTGNAFKFTEKGEICIGIEFLEDHSKQVRLKFSIRD 532

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +G  + E+    +F  F        R+  G GLGL+I +    L  G + + S
Sbjct: 533 SGIGLSEEQIGKLFQSFSQADTSTTRKYGGTGLGLAICKQLAELMEGEIGVDS 585


>gi|283851963|ref|ZP_06369239.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572687|gb|EFC20671.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1139

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 171/368 (46%), Gaps = 31/368 (8%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           ETKY  L+         + +G  V   +GRI  SNPAFR +     + L   T+ +++  
Sbjct: 484 ETKYRALLA-------SIRDGFVVVDDNGRIMESNPAFREMVGYSRDELGRLTY-KDL-- 533

Query: 486 TCSRYYNESDGWDLFAAIITS-----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                ++E++   L  A+ T      F+ E +   G++  ++  +  Y      N +   
Sbjct: 534 -TPESWHETEETILRTAVDTCGFSDVFEKEYRRRDGSVVPVALRLHRYPSRAGENYRYFA 592

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++TD    E  L +  E    A+  K+ F+  +S+++R+PL  +IG T+L     LG
Sbjct: 593 IVRDITDVKAIEADLRQAKETAETANRAKSDFLAKMSHDIRTPLHAVIGMTEL----TLG 648

Query: 601 S-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           + L+++Q   +E +  S+  LL L+NDILD++ ++A  + +      L   L    +++ 
Sbjct: 649 TLLSAQQRDALETVRESAASLLALINDILDISRIEARKLDVAREDFDLRRTLAATVRAMR 708

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714
            +  +  + + +     +  FV  D  R+ QI + ++ NA+ F+ +G   +    +    
Sbjct: 709 PQAAQKALFLGLAIAPAVPRFVTGDEVRVRQILTNLIGNALKFTDQGGVTVSVAPMAGPD 768

Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHG 769
             GD +   F+V + G  IP D   S+F  F  +NA  G+   G GLGL+I      L G
Sbjct: 769 APGDPLFLEFTVADTGVGIPSDKLASIFEMFTQANASVGKHYGGTGLGLAICRELARLMG 828

Query: 770 GHVSISSS 777
           G +   S+
Sbjct: 829 GGIRTEST 836


>gi|222147633|ref|YP_002548590.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734621|gb|ACM35584.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 1410

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 5/247 (2%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQ 608
            R E  L     A   A+  K  F+  VS+E+R+PL  IIGF D++   + G + + + ++
Sbjct: 1159 RTEEELRSAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADIMADERFGPIGHGRYAE 1218

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            Y   I  S   +L++VND+LD++ ++AG M L++  + LN+ ++E    +  + +   + 
Sbjct: 1219 YAADIGRSGRHVLDIVNDLLDISKIEAGEMDLDFIAVGLNETVSEAVAIVQPQANGQRVI 1278

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727
            I+      + + VAD + + QI   ILSNA+ F+  G  +I+      NG     +++ G
Sbjct: 1279 IRTALSQSVPNVVADMRSIKQIVLNILSNAIRFTPSGGQIIVSTNYEPNGSVTLRIRDTG 1338

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
              +     +     F   +  G R    G GLGL + ++ ++ +    +I S+    T +
Sbjct: 1339 IGMTRAELEQAMKPFRQVSPGGARLRGDGTGLGLPLTKAMVDANRASFAIQSTPNEGTLV 1398

Query: 785  NCRIPSK 791
                PS 
Sbjct: 1399 EITFPSP 1405


>gi|119947312|ref|YP_944992.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119865916|gb|ABM05393.1| sensor histidine kinase with ATPase domain [Psychromonas ingrahamii
           37]
          Length = 1278

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 25/260 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA++A+  +   L KA   K+ F+ ++S+ELR+PL +++  +  L  +  G+LN +Q + 
Sbjct: 553 RAKQAVEIQANNLEKASRYKSEFLANMSHELRTPLNSLLILSQSLAKNSQGNLNEEQQED 612

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I      LL L+NDILDL+ V+AG + +++    +N+LL  + +      ++  + +
Sbjct: 613 ARVIYEGGQSLLALINDILDLSKVEAGKLDIHFEQFSINNLLVNLGRQFKPVANKKGVEL 672

Query: 670 -----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------- 711
                 V+SD     F +D QR+ Q+   +LSN + F+  G TV LK             
Sbjct: 673 CFDKEDVLSD----DFFSDPQRIEQVLRNLLSNGIKFTHHG-TVSLKVIQPGPSVRFDNP 727

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           A R      F+V + G  I  D  +SVF  F        R   G GLGL+I    + L G
Sbjct: 728 ALRGRNTLGFAVSDTGIGISADNQESVFEAFQQGDGSTSRNYGGTGLGLTISRELVKLMG 787

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S +   +T    +P
Sbjct: 788 GEIQLQSKEGEGSTFTLYLP 807


>gi|119486137|ref|ZP_01620197.1| GAF Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
 gi|119456628|gb|EAW37757.1| GAF Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
          Length = 615

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 16/237 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ + S+ELR+PL  IIGF  L+    +     ++ ++V+    ++  LLNL+ND+
Sbjct: 355 LKSEFLANTSHELRTPLNGIIGFLKLVIDGMVDD-PEEEREFVQEGHRAALHLLNLINDV 413

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685
           LD+A ++AG M+++ + + +++LL EV+Q   T++ +  + + +         +  A+ Q
Sbjct: 414 LDIAKIEAGKMEIDLALVKVSELLKEVEQFTKTQVQQKGLNLSIHEHSYSPDLIVYANYQ 473

Query: 686 RLLQIFSKILSNAMDFSSKGST----------VILKAARDNGDFIFSVKNNGSSIPEDMC 735
           RLLQ+   ++ NA+ F+ +G            VIL+     G   F V + G  +P +  
Sbjct: 474 RLLQVMLNLVGNAIKFTHEGGVNISLGVLNQKVILQNQEFPGFVEFRVTDTGIGVPLEKQ 533

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
             +F  F  V   +  Q  G GLGL I +  +   GG V   S  EG+ +T+   +P
Sbjct: 534 DRLFKAFSQVDTGYTRQYGGTGLGLVISQKLVQAMGGSVKFYSLGEGLGSTVTFTVP 590


>gi|330985056|gb|EGH83159.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 1185

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 11/255 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +V++T+  R E+ L E      +A+E K+ F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 669 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 728

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++  SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L   V +  + +
Sbjct: 729 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             E ++ +++  S+   G +  D  RL Q+   +L NA+ F+ +GS V+   A D+   +
Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVVALDDSSRV 847

Query: 721 -FSVKNNGSSI-PEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +++++G  I PE   +       ++    AH G   G GLGLSI    + L  G +S+
Sbjct: 848 RIAIQDSGEGIEPERQQQIFQPFIQASDDTAAHYG---GSGLGLSITRQLVELMKGDISL 904

Query: 775 SSSDEGVTTINCRIP 789
            SS    T +N  +P
Sbjct: 905 HSSPGEGTLVNIDLP 919


>gi|320535487|ref|ZP_08035593.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Treponema phagedenis F0421]
 gi|320147679|gb|EFW39189.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Treponema phagedenis F0421]
          Length = 514

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 128/257 (49%), Gaps = 14/257 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + ++ +  + E   K+ +I   F+ +VS+++R+P+  IIG  +LL+T+KL   +
Sbjct: 107 DITQQKQHDKLVQSEKEETIKSKKIHKQFLANVSHDIRTPIQTIIGMMELLRTTKL---D 163

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y+  I+ S+ ILL LVNDILD + ++ G M+       L  L+      IA + H
Sbjct: 164 QEQKEYIRQINFSAEILLELVNDILDFSKLEVGSMQFENIPFDLVSLMESSIDFIAIEGH 223

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGD-- 718
           +  + I +     L   F+ D  RL QI   ++ NA+ F+ KGS    + +A   + D  
Sbjct: 224 KKGLEILLNMSPALNPYFIGDPSRLKQILLNLMKNAVKFTEKGSVTVDVFEAELPDKDGK 283

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 F + + G  I ++  + +F  F        RR  G GLGL+I ++ I +  G +
Sbjct: 284 AMPALYFEIADTGIGITDEQKEKLFTVFYQTEASVSRRFGGTGLGLAISKNIIKMLNGEI 343

Query: 773 SISSSDEGVTTINCRIP 789
            +  +    +    ++P
Sbjct: 344 GVKDNKPHGSIFWFKLP 360


>gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 606

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 164/362 (45%), Gaps = 41/362 (11%)

Query: 438 ETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNES 494
           ETI +++++GV  F  DG +  +NPA + +    E  +  +  +++ N+  T        
Sbjct: 262 ETILNYMTDGVIAFNLDGEVVHANPASKLMLGVNEFNMDFNKFSNMYNLGIT-------- 313

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRAER 553
                              ++  L L + S  E S+    N    + F ++  D  +AE 
Sbjct: 314 -------------------IEEMLYLETFSTKEASL-SFDNKYIRVYFALSTNDQNKAEG 353

Query: 554 --ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-- 609
             A+   N   +K D ++  FV +VS+ELR+PLT+I  +++ L     G+L  K++ Y  
Sbjct: 354 IIAVMHDNTVQQKLDNMRREFVANVSHELRTPLTSIKSYSETLMD---GALEDKETAYRF 410

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I++ +  +  LV D+L L+ ++   M+ N        L+    + I     E    I
Sbjct: 411 LNVINSEADRMTRLVKDLLQLSRLENEQMQWNMQPFCFESLVRSSVEKIELSAKEKRQVI 470

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +  S G      AD+ R+ Q+   +L+NA+ ++     + +   +   D    V ++G  
Sbjct: 471 ECFSIGDKPEVYADKDRIEQVVLNVLTNAIKYTPDKGKITVYIGKMYSDAYVKVVDSGIG 530

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+  K VF RF  V  A   +  G GLGLSI +  I  H G +SISS     T +  R
Sbjct: 531 IPEEDIKRVFERFYRVDKARSREMGGTGLGLSIAKEIIEAHKGSISISSQLGKGTEVIVR 590

Query: 788 IP 789
           +P
Sbjct: 591 LP 592


>gi|225462102|ref|XP_002277460.1| PREDICTED: ethylene receptor-like [Vitis vinifera]
          Length = 742

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 136/264 (51%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 316 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 375

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS++L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 376 ---TPEQRLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIK 432

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + +       L  F V D +RL+QI   ++ NA+ FS++G+  I       ++
Sbjct: 433 PIASVKKLFVSSSLAPDLPEFAVGDEKRLMQIMLNVVGNAVKFSNEGNISIFAFIAKSES 492

Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD+   DF              VK++G+ I P+D+ K +F +F        R   G GL
Sbjct: 493 LRDSRAPDFFPVHSDNHFYLRVQVKDSGAGIDPQDISK-LFTKFAQCQSLAARNSGGSGL 551

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL GGH+ I S   G
Sbjct: 552 GLAICKRFVNLMGGHIWIESEGLG 575


>gi|307727189|ref|YP_003910402.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1003]
 gi|307587714|gb|ADN61111.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1003]
          Length = 720

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 11/232 (4%)

Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER    + EA R A+     K  F+ ++S+ELR+PL  I+G+  +L+     SL++   +
Sbjct: 243 ERDAAAEREARRSAEAANRAKAEFLANMSHELRTPLNAILGYAQILRRD--ASLSAGHRE 300

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  S   LL L+ D LD A ++AG +++  + + L   L+ +++ I  K+ + ++ 
Sbjct: 301 RVGVIQRSGEHLLALIGDALDFARIEAGRLRIEMNDVPLAGTLDAIREIIEVKVAQKHVD 360

Query: 669 I--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              +V  D    +  AD +RL Q+   +L+NA +F+ +GS  +L     +G   F V++ 
Sbjct: 361 FIWRVAPDVP-DAVRADERRLRQVLLNLLANAFNFTDQGSVSLLIEMSASGKVCFEVRDT 419

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  +  D  +++F  F    H  RG   G GLGL+I + F+   G  + + S
Sbjct: 420 GIGMDADQFQTIFEPFEQIVHTERGT-SGTGLGLTISQQFLRAMGSEIHLQS 470


>gi|126731549|ref|ZP_01747355.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
 gi|126708085|gb|EBA07145.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
          Length = 886

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 10/262 (3%)

Query: 534 PNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           P  +  + F+ +++D VR++ AL    +     ++ K   +  +S+E+R+PL  I+G  +
Sbjct: 329 PTGEIFVAFLRDISDRVRSDEALRRARDRAVAGEKQKAELLAVMSHEMRTPLNGILGTLE 388

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+     SL ++  +Y+  I  SS ILL  VN++LD++ +DAG M L  +   L  LL 
Sbjct: 389 LLEAD---SLPAEDQRYLRIIRQSSEILLGHVNEVLDISRLDAGKMTLRKTRFDLVALLE 445

Query: 653 EVKQSIATKMH-ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           E+ +S A +   + N+      +  L    +D  RL QI   ++SNA+ F++ G  ++++
Sbjct: 446 EIVESQADRARAQGNLLTLRPPNPALHEVYSDPDRLRQILLNLVSNAIKFTA-GGRIMIE 504

Query: 712 AARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINL 767
           A  D+G  D    V + G  I  D    +F+ FV+ ++  G+R  G GLGLSI +     
Sbjct: 505 ADCDSGMDDCELRVIDTGVGIKPDDLARIFDDFVTIDSSYGRRNTGTGLGLSISQRLATA 564

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG +   S     +    R+P
Sbjct: 565 LGGELGAESEPGDGSVFWLRLP 586


>gi|303247117|ref|ZP_07333392.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491543|gb|EFL51428.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 997

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 113/245 (46%), Gaps = 13/245 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    EA  +A  +K+ F+ ++S+ELR+PL  I G T LL  +   SL  +Q +YV   
Sbjct: 605 ALLSAKEAAERASRVKSEFLANMSHELRTPLNGIQGMTQLLAAT---SLTPEQREYVRAA 661

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             S   L  L+ DILDL+ V++G + L      L DLL+ V  +      E  I     +
Sbjct: 662 LVSCRRLTRLLGDILDLSRVESGKLTLLPEPFRLADLLSAVAAAFMPACLEAGIDWGTEV 721

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNN 726
           + G       D  R+ QI   ++ NA+ F+  G  V L+       A   G   F+V + 
Sbjct: 722 APGVPEILFGDEGRVRQILYNLVGNAVKFTKTGG-VRLEVWAGPVDASGCGSLFFAVTDT 780

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP    + +F  F        RR  G GLGL+IV   ++L  G +S+ S     T  
Sbjct: 781 GVGIPAPELERIFEAFHQVERSFSRRFQGAGLGLAIVRRLLDLMQGTISVESEVGRGTRC 840

Query: 785 NCRIP 789
            C +P
Sbjct: 841 VCALP 845


>gi|253578663|ref|ZP_04855934.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849606|gb|EES77565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 943

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 124/244 (50%), Gaps = 12/244 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  E  + A++ K +F+ H+S+++R+P+  I+GFT +   +   + + +    +E I 
Sbjct: 553 MAELAEHAQAANKAKTAFLSHMSHDMRTPMNAIMGFTGI---AMKNNPSDEVKNCLEKID 609

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673
            SS  LL+L+ND+LDL  V++G +K N     L  + +         +   +I  K+   
Sbjct: 610 ESSEHLLSLINDVLDLTRVESGKVKYNPVPTDLKSITDFALDITKGFLTNRDISFKIQRE 669

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGD-FI---FSVKNNG 727
           + K+ + + D  RL  +   ILSNA+ F+  G T+  +A      GD +I   + + + G
Sbjct: 670 EAKIPNVLVDSVRLRDVLVNILSNAVKFTPDGETITFEARCQEKGGDGYINMHYRISDTG 729

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + E+  K VF  F       R Q  G GLG++IV+ ++++ GG +S+ S     TT  
Sbjct: 730 IGMSEEFTKEVFEEFAQEDSDVRTQYHGAGLGMAIVKKYVDMMGGTISVQSKKHEGTTFT 789

Query: 786 CRIP 789
             IP
Sbjct: 790 VDIP 793


>gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 802

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 7/237 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NVT     ERAL    E    A+  K++F+  +S+E+R+PL  ++G    +    +  L+
Sbjct: 400 NVTVRKAQERALVRAKEEAEAANRAKSAFLATMSHEIRTPLNGVLGMAQAM---AMDELS 456

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q + ++ I  S   LL ++ND+LDL+ ++AG + L  +   + +L+  V  + A    
Sbjct: 457 PAQRERLDVIRQSGESLLAILNDVLDLSKIEAGKLDLEEAEFDVEELVRTVHATFAAVAE 516

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +  ++ ++    G +  D  R+ QI   ++SN + F+ +G+ V ++  R  G   F 
Sbjct: 517 AKGLGFEIAVARNARGLYRGDPIRVRQILWNLVSNGLKFTDRGA-VEVRVRRAQGLLAFE 575

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           V++ G  I  +   ++F +F        RR  G GLGL+I      L GG ++  S+
Sbjct: 576 VRDTGIGIAPEQLANLFRKFEQADASTTRRFGGTGLGLAICRELAGLMGGEIAAESA 632


>gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1]
 gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1]
          Length = 1049

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 127/265 (47%), Gaps = 34/265 (12%)

Query: 543 VNVTDSVRAERALTEKNEALR----KADEI----------KNSFVQHVSYELRSPLTNII 588
           VN+T   +AE  L + NE L     +A+E+          K+ F+ ++S+E+R+P+   I
Sbjct: 481 VNITKRKQAEEELLQANEQLENATARANELAVQAEAANHAKSEFLANMSHEIRTPMNGFI 540

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T LL  ++L     +Q QY   + +S   LL L+NDILD + ++AG +++      L 
Sbjct: 541 GMTMLLLDTEL---TEEQRQYAGIVKSSGESLLVLINDILDFSKIEAGKLEIETLDFDLQ 597

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
            LL++   + A K H+  + +   ++  +      D  RL QI + ++ NA+ F+ KG  
Sbjct: 598 SLLDDFAATTAFKTHDKGLELLCAAEPDVPVQLSGDPGRLRQILTNLVGNALKFTEKGEV 657

Query: 708 VIL------------KAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
            I              +  D+   +  FSV++ G  IP D    +F +F        R+ 
Sbjct: 658 AIRVKTVGEACQTGQTSLNDDASLLLRFSVRDTGIGIPADKIGMLFQQFTQVDASTTRKY 717

Query: 753 -GVGLGLSIVESFINLHGGHVSISS 776
            G GLGL+I +    + GG + + S
Sbjct: 718 GGTGLGLAISKHLAEMMGGEIGVES 742


>gi|309791782|ref|ZP_07686270.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226188|gb|EFO79928.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 854

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 12/233 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L+  N  L  A  +K+ F+ ++S+ELR+PL  I+G T++      G L+   ++ +  
Sbjct: 463 RELSIANLNLAHAARVKDEFLANMSHELRTPLNAILGRTEMCLDGFYGPLSDGATKALHT 522

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L+ND+LD+A +++G   L    I ++++     + I+ +  + +I I   
Sbjct: 523 IEESGRHLLELINDVLDVAKIESGHADLELQLIAVDEVCAASLRLISQQALKKHIHINQE 582

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFI-FSVKNNGSSI 730
            D ++    AD +R+ QI   +L+NA+ F+ +G  + L    D   D + F V + G  I
Sbjct: 583 IDPQVDLIHADARRIKQILINLLNNAVKFTPQGGNIGLTVTGDREQDLVHFIVWDTGIGI 642

Query: 731 PEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             D    +F  F      +S AH     G GLGL +V S + LHGG V + S+
Sbjct: 643 APDQIGRLFQPFTQIDSSLSRAH----EGTGLGLHLVASLVRLHGGSVQVEST 691


>gi|224369325|ref|YP_002603489.1| two-component sensory histidine kinase [Desulfobacterium
           autotrophicum HRM2]
 gi|223692042|gb|ACN15325.1| two-component sensory histidine kinase [Desulfobacterium
           autotrophicum HRM2]
          Length = 448

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 564 KADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           KADE I++ F+  +S+E+R+PL+++    +++    LG +N +Q ++++   +  T + +
Sbjct: 212 KADEDIRSDFIATLSHEIRTPLSSVQESVNMIIEEILGPVNERQKKFLKLAGSEITRITS 271

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N +LD++ ++AG  K N +    N L+ E  QS+ T     +  +K  +  +    + 
Sbjct: 272 LLNHLLDISMLEAGTQKSNPAPFDPNQLIVEAIQSLDTTAKRKHTVVKAHTLIRAPRVMG 331

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + + ++Q+   I+ NA+ FS + S V   L  +R++G   F++ +NG  IP +    +F 
Sbjct: 332 EEKEIMQVLMNIIGNAIKFSDENSLVDIWLSKSREDGFLSFNISDNGPGIPREKHGLIFK 391

Query: 741 RFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           R+      R    GVGLGL+I    +  HGG + + ++ D+G T
Sbjct: 392 RYYRAEEVRNHMSGVGLGLNISRRIVQSHGGKIFVENNIDKGCT 435


>gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra
           magnipapillata]
          Length = 566

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 124/244 (50%), Gaps = 12/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +VT +      L +  +A   A+  K+ F+ ++S+E+R+P+  +IG T+LL  +   +
Sbjct: 32  LTDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDT---T 88

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y+  + +SS  LL ++NDILD + ++AG M +      L   + +  +++  +
Sbjct: 89  LDAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLR 148

Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG 717
            H+  + +   V  D    + V D  RL Q+   IL NA+ F+ +G  V  I +    NG
Sbjct: 149 AHDKGLEVVWDVAPDVPR-ALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASNG 207

Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +   +V + G  IP +   S+F+ F        R+  G GLGL+I    +   GG + 
Sbjct: 208 KPLLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIW 267

Query: 774 ISSS 777
           + S+
Sbjct: 268 VEST 271


>gi|161508039|ref|YP_001578006.1| two-component sensor [Lactobacillus helveticus DPC 4571]
 gi|160349028|gb|ABX27702.1| Two-component sensor [Lactobacillus helveticus DPC 4571]
          Length = 382

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++ K+  + +VS+++R+PLT+IIG+  LLK+         Q +YV+     +  + +
Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYVDIAYTKAEQMKS 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ +  T+ +   KLN +++ +  +L +V      +  +  I IK+ +  K  +  A
Sbjct: 206 LANDLFEYTTLKS--TKLNLTSLHIYSMLEQVAAGFELEAEKKGIEIKIEARPKDLTIRA 263

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++++ ++SNA+ +    + + L A   N   +   V+NNG  IP+   K +F+R
Sbjct: 264 DAEKLVRVYNNLISNALKYGIGATQIKLVANLVNKQEVELRVENNGEPIPKKSLKKIFDR 323

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGLSI E  ++LH G +    SD+  T+   R+P
Sbjct: 324 FYRVETSRNTKTGGTGLGLSITEGVVDLHHGTIR-CESDKNWTSFIIRLP 372


>gi|86608725|ref|YP_477487.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557267|gb|ABD02224.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 282

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 7/236 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTIL 620
           L+K  +I+++F+  VS+ELR+PLT+I     LLK S ++  L  KQ QY+E +  +    
Sbjct: 47  LKKLSQIRDNFLAAVSHELRTPLTSISLSVHLLKLSYQVSPLTPKQIQYLEVLEQACERE 106

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           ++L+ND+LDL  +    +KL    + L  LL  +      +M +    ++V  D  L  +
Sbjct: 107 ISLINDLLDLQNLSGNTLKLPSEQVNLPLLLAPLINRFQDRMRKRQQTLEVHWDPHL-PY 165

Query: 681 VADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSV 738
           +    RLL+ +  ++L+NA  F+  G  ++L+      D +   + N G++IP +  + +
Sbjct: 166 LHTHPRLLERLVCELLTNAHKFTPAGKHIVLEVVALGSDRWELRLTNTGTTIPLEEQERI 225

Query: 739 FNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F +F    H    Q+ G GLGL++ ++  N  GG + + S+    T I  R+P+ E
Sbjct: 226 FEQFYRIPHSDPWQQGGTGLGLALAQAIANHLGGSLQVESTAHQTTFI-LRLPAAE 280


>gi|227889300|ref|ZP_04007105.1| sensor histidine kinase [Lactobacillus johnsonii ATCC 33200]
 gi|227850102|gb|EEJ60188.1| sensor histidine kinase [Lactobacillus johnsonii ATCC 33200]
          Length = 385

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 132/234 (56%), Gaps = 8/234 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  LLK+S+   LN  Q++Y++     +  
Sbjct: 145 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYLGLLKSSE---LNEDQTKYIQIAYDKALQ 201

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +  L  D+ +  T+ +    KL  + + +N +L +V      +  + NI   V++  +  
Sbjct: 202 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 261

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
              AD + ++++ + ++SNA+ +    + + L A + N +F+   V+NNG  IP+   + 
Sbjct: 262 VIDADAKMIVRMLNNLISNALKYGRGATEINLIANKVNNEFVELRVENNGEQIPKKSLQK 321

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V ++   +  G GLGL+I +S ++LH G++   S+ E +T+   ++P
Sbjct: 322 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHSGNIKCQSTSE-LTSFIIQLP 374


>gi|296418541|ref|XP_002838889.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634872|emb|CAZ83080.1| unnamed protein product [Tuber melanosporum]
          Length = 1966

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 17/252 (6%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E+ L E  +A +K  E K  F+ ++S+E+R+PL  I G  + L  + L   N +Q  Y  
Sbjct: 1277 EQRLKEAKDAAQKTMESKTRFLANMSHEIRTPLIGISGMVNFLLDTPL---NGEQLDYCH 1333

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             IS SS  LL+++NDILDL+ V+AG+M++N     +N L+ +  + ++      ++ +  
Sbjct: 1334 TISQSSDGLLSVINDILDLSKVEAGMMRMNPEWFRINTLIEDANELLSAMAVAKDLELSF 1393

Query: 672  ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFI--FSV 723
            I +  +   V  DR RL Q+   ++ NA+ F++KG      +VI  A    G+ +  F  
Sbjct: 1394 IVEDDVPPVVCGDRVRLRQVMLNVIGNAIKFTTKGEVFSRWSVIKDAQVGEGEVMLQFEC 1453

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G        + +F  F  +  +   +  G GLGL I    + LHGG ++  S     
Sbjct: 1454 HDTGPGFDRKDEELMFKPFSQIDGSSTREHGGSGLGLVISRQLVELHGGRMTAKSQKGKG 1513

Query: 782  TTINC----RIP 789
            +T  C    R+P
Sbjct: 1514 STFICSSKFRLP 1525


>gi|288918897|ref|ZP_06413241.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
 gi|288349749|gb|EFC83982.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
          Length = 1412

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 124/254 (48%), Gaps = 18/254 (7%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L EK E L  + + K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ  + E I
Sbjct: 875  GLEEKAEQLALSSQYKSEFLANMSHELRTPLNSLLILAKLLADNPDHNLSQKQIDFAETI 934

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKV 671
             ++ + LL L+NDILDL+ V+AG M ++   +    L + V         E  +   I V
Sbjct: 935  HSAGSELLGLINDILDLSKVEAGKMNVDAGPVRTAALCDAVAGVFGPTAEEKGLTFEISV 994

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---------- 720
             SD     FV D QR+ Q+   +LSNA+ F+  G+  + +  A  +  F+          
Sbjct: 995  TSDVPE-EFVTDEQRIQQVLKNLLSNAVKFTDSGTVRLDVSVASPDTPFVAPSLRSAPMV 1053

Query: 721  --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              F+V + G  +  +  + +F  F        RR  G GLGLSI +    L GG +++SS
Sbjct: 1054 LSFAVSDTGIGVAAEKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSS 1113

Query: 777  SDEGVTTINCRIPS 790
                 +T    +PS
Sbjct: 1114 QIGQGSTFTLFVPS 1127


>gi|160882577|ref|ZP_02063580.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483]
 gi|156112021|gb|EDO13766.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483]
          Length = 674

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 5/233 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q  
Sbjct: 431 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQQS 488

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     ++ +
Sbjct: 489 YYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSDNQ 548

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727
               +  +    V D QR+ Q+   +LSNA  F+ +G  T+      +    IFSV + G
Sbjct: 549 FLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTDTG 608

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             IP++    VF RF       Q  G GLGLSI +  ++   G + I     G
Sbjct: 609 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 659


>gi|326203106|ref|ZP_08192972.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325986752|gb|EGD47582.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 594

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 151/293 (51%), Gaps = 16/293 (5%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           +++T+  +E+KS Q  ++   +  L++++ P+ +        NVT  V   + ++E    
Sbjct: 316 SLLTTVINEKKSCQ-IIKTWVNKKLKFTLSPIIDNNE-----NVTGCVVLVQDISES--- 366

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
             + ++++  F+ +VS+E R+PLT I G  + L     G++  K+   +Y   I + + I
Sbjct: 367 -ERLEQLRKDFIANVSHEFRTPLTVIKGSIEALND---GAIEKKEDIERYYSRILSETKI 422

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV D+L+L+ + +G + +N   + +  LL++V +S+ T   +  I I+      +  
Sbjct: 423 LQRLVGDLLELSRLQSGKISVNEEKVHIPSLLSDVTKSMQTIAVKKQISIEYSPIEAVPP 482

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL Q+F+  + NA+ +S + + + ++ A   G     + + G  I E+    V+
Sbjct: 483 VLGDYDRLRQLFTIFIDNAIKYSPEKTKISIEIAV-KGTLEIKIADKGYGISEEELPYVW 541

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF       +  G GLGLSI +  I LHGG+V++ SS E  TT+   +P  E
Sbjct: 542 ERFYKTDKSRESNGTGLGLSIAKHLIQLHGGNVTMQSSLEEGTTVTVYLPYSE 594


>gi|209966271|ref|YP_002299186.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959737|gb|ACJ00374.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 818

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--KLGSLNSKQSQ 608
           AER L +   A       K+ F+ ++S+ELR+PL  IIGF ++L++   + GS  +K + 
Sbjct: 562 AERLLEQAKAAAELGSRTKSEFLANMSHELRTPLNAIIGFAEVLESELKQQGSPIAK-AG 620

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I+AS   LLNL+NDILD++ ++AG ++L        +LL   ++ +  +  E  I 
Sbjct: 621 YASDIAASGRHLLNLINDILDVSKMEAGKVELRERICDPGELLAGCERIVRARAMERRID 680

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           +++     L   + D  +  QI   +LSNA+ F++   +V +K   D    +  +V + G
Sbjct: 681 LRLEVPPGLPPVLVDDVKFKQIVLNLLSNAIKFTAPSGSVRVKVQADPARGLSIAVSDTG 740

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +  + VF  F  V N +     G GLGL++      LHGG + I S     TT  
Sbjct: 741 IGIRAEDLEKVFIPFNQVDNIYARINPGTGLGLALSRGLAELHGGQLFIESVFGEGTTAT 800

Query: 786 CRIPS 790
            R+P 
Sbjct: 801 LRLPP 805


>gi|302864835|ref|YP_003833472.1| ATP-binding region ATPase domain-containing protein [Micromonospora
            aurantiaca ATCC 27029]
 gi|302567694|gb|ADL43896.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
            ATCC 27029]
          Length = 1454

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 131/255 (51%), Gaps = 16/255 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A   L EK + L +A   K+ F+ ++S+ELR+PL +++    LL  +   +L++KQ ++ 
Sbjct: 1027 ARLGLEEKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLAENPERNLSAKQIEFA 1086

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  + + LL+L++DILDL+ ++AG M +  + I   ++   V+Q+ A +  E  +  +
Sbjct: 1087 RTIHGAGSDLLSLIDDILDLSKIEAGRMDVEPTEIQFAEIRGYVEQAFAPQAEEKGLDFQ 1146

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF--------- 719
            V +S     + V D QRL QI   +LSNA+ F+  G+ T+ +  A DN  F         
Sbjct: 1147 VRVSRDLPPALVTDAQRLQQILRNLLSNAVKFTDNGAVTLRIGLAADNAVFDVPALTNAQ 1206

Query: 720  ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F+V + G  I +D    +F  F        RR  G GLGLSI      L GG +++
Sbjct: 1207 RVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGTITV 1266

Query: 775  SSSDEGVTTINCRIP 789
            SS+    +T    +P
Sbjct: 1267 SSAPGQGSTFTLFVP 1281


>gi|218710564|ref|YP_002418185.1| hybrid sensory histidine kinase BarA [Vibrio splendidus LGP32]
 gi|218323583|emb|CAV19820.1| Sensor protein barA [Vibrio splendidus LGP32]
          Length = 937

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQTDYLQTIERSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           +++NDILD + ++AG + L          L EV    AT  HE  + + +  D K+    
Sbjct: 341 SIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  +   + D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|83646921|ref|YP_435356.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634964|gb|ABC30931.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 433

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 9/227 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI-LLN 622
           + D I+  +V  VS+ELR+PLT I G   LL++ +    N  Q  ++  ++ ++T+ L+ 
Sbjct: 199 RLDHIRREWVAVVSHELRTPLTAIQGSLGLLQSGRFDH-NPDQKAHMLQMACNNTVRLVK 257

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LVN++LD+  +++G + L  +++   +L+ E   +IA      N+ ++           A
Sbjct: 258 LVNEVLDIERIESGRLTLELTSLNPRELIQEAVDTIAPAASLKNVSLRYQPQDAT-PIKA 316

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RLLQ+   +LSNA+ FS  G  + +K           V + G  IP+ + K +F RF
Sbjct: 317 DHDRLLQVLQNLLSNALKFSPSGGVIEVKLKDKPEQLNIDVIDQGPGIPQQLTKRLFTRF 376

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                   R   G GLGL I ++ I  H G +   +  EG     CR
Sbjct: 377 AQATTAANRSTGGSGLGLYISKAIIEQHQGRIGFENQPEG----GCR 419


>gi|325104428|ref|YP_004274082.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM
           12145]
 gi|324973276|gb|ADY52260.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM
           12145]
          Length = 641

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 10/232 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    E   +A  +K +F+ ++S+ELR+PL  IIG  +LLK ++L      Q Q V+
Sbjct: 251 EEQLIHSKEDAIQARNVKETFLANMSHELRTPLNGIIGIANLLKQTEL---EEAQKQMVK 307

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  SS  LL +VNDILDL+ +DAG   L+   + +  +L    + + TK +E  + + +
Sbjct: 308 LLEVSSQSLLGVVNDILDLSKIDAGKFVLSKKEVNIYHILKSSIELMRTKANEKLLDLNL 367

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNN 726
             D +L  ++  D  RL QI   ++SNA+ F+ KG   + +      GD+I   F VK+ 
Sbjct: 368 EIDPRLPKYIETDPLRLNQILMNLISNAIKFTEKGYVSLRVNQLSHEGDYITVKFEVKDT 427

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  I  +    +F  +    +    +  G GLGL IV+  + L  G +  +S
Sbjct: 428 GIGIQPERKAKIFESYEQADDDTSLKYGGTGLGLGIVKKLVELQNGKIDFNS 479


>gi|299149291|ref|ZP_07042351.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512725|gb|EFI36614.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 534

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 15/243 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL  S 
Sbjct: 283 VITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               + K+ Q YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ ++
Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRN 398

Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714
              K    +  + V+    L +F    D++RL+Q+ +  ++NA+ F++KG  ++      
Sbjct: 399 YDIK---EDKPVPVLLAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKE 455

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           D  +  FSV + G  I  D    VF+RFV  N+     +G GLGLSI  S I   GG + 
Sbjct: 456 DTCEIEFSVADTGMGIEPDKVDRVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIG 512

Query: 774 ISS 776
           + S
Sbjct: 513 VES 515


>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus]
          Length = 1177

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 131/258 (50%), Gaps = 12/258 (4%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E  ++ L     ML    + D  RA+ +L   ++A   A + K++F+ ++S+E+R+P+  
Sbjct: 481 EARMVMLRQVGEMLALAILED--RAKASLKAAHDAAVDAAQAKSAFLANMSHEIRTPMNG 538

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G  +LLK +    ++ +Q   VE  S S+  LL ++N ILD + ++AG +++  +   
Sbjct: 539 VLGMLELLKDT---DMSREQWDLVETASNSAESLLEIINSILDFSKLEAGKVEIERTEFN 595

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L DL+ EV   +A + H+  + +       L   ++ D  R+ QI + +L N++ F+ +G
Sbjct: 596 LPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQILTNLLGNSVKFTERG 655

Query: 706 STVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
              +     +A     D  F +++ G  I  D+   +F  F        RR  G GLGLS
Sbjct: 656 EVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGLGLS 715

Query: 760 IVESFINLHGGHVSISSS 777
           I  + + L GG + + S+
Sbjct: 716 ICRNLVELMGGTIGLESA 733


>gi|329889991|ref|ZP_08268334.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845292|gb|EGF94856.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 595

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 137/287 (47%), Gaps = 24/287 (8%)

Query: 517 TLELLSDSVLEYSIIPLP-NAQTMLTFVNVT----DSVRA----ERALTEKNEALR---- 563
            + LL D V    +   P  A ++   V +T    + +RA    +  L E+ EA R    
Sbjct: 144 AVNLLGDPVFWPFVALAPFTAASLFVLVTMTMLREERIRAFQEHQAHLIEELEAARDKAD 203

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A+E K++F+  +S+ELR+P+  ++G   LL  ++L      Q +Y+  I  S   LL+L
Sbjct: 204 AANEAKSNFLGVISHELRTPMNGVLGAAQLLSATRL---EGAQREYLAIIRNSGDNLLSL 260

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +NDILD+  ++AG M      + L DL   +      +     +      +G + + V  
Sbjct: 261 LNDILDMTKIEAGRMNFEAVDVNLEDLHRRIVGPFEAQAEAKGLNFIAEFEGDVPAVVRG 320

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
           D  R+ Q+   +LSNA+ F+ +G+   +   R   +    F F V ++GS I +D    +
Sbjct: 321 DPLRVCQVVQNLLSNAVKFTDQGAVRFVTRGRRVSERRVAFEFVVIDSGSGISDDDMDQL 380

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           F  F        RR  G GLGL+I     N+ GG +S++SS  EG T
Sbjct: 381 FQPFTQVDASSTRRFGGTGLGLTISRRLANIMGGEISVTSSLGEGST 427


>gi|303245459|ref|ZP_07331743.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302493308|gb|EFL53170.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 576

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 181/419 (43%), Gaps = 68/419 (16%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E KY  +V       ++ +EG+     DGR+  +NPA  ++        SP   +R + +
Sbjct: 169 EEKYRGIV-------ENAAEGIFQSSLDGRLISANPAVATIL----GYASPREMMRRVKS 217

Query: 486 TCSRYYNESDGWDLFAAIITSFDDER-----------------------KSLQGTLELLS 522
              +     D      A +  +D  +                       +   G  E   
Sbjct: 218 IIDQTVAREDDRQRIRAELERYDQVKNLEVQLVTKSGDLIWGLINARRIRDAAGEAERF- 276

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEAL------RK--------AD 566
           D  L+   I     QT+L + +  +   AER   LT  NE L      RK        A+
Sbjct: 277 DGSLQDVTIRKQAEQTLLRYHDELERRVAERTAELTRANERLTHEVTIRKRAEEAADAAN 336

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKT------SKLGSLNSKQSQYVEYISASSTIL 620
             K+ F+  VS+E+R+PLT+++GF  +++       ++L   + +Q +  E I  +  I+
Sbjct: 337 RAKSEFLSMVSHEIRTPLTSVMGFAVIIEKRLDQLFNRLLGDDPRQRRQAEQIMENLGII 396

Query: 621 L-------NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVI 672
           +       +L+ND+LDLA ++AG M   +  +   +++  V  +    +     + +K  
Sbjct: 397 VSEGERLKHLINDVLDLAKLEAGKMAFKHERVDPAEVVRHVMSASEGLLAATPRVALKTS 456

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             G+L   + DR RL+Q+   ++SNA+ F+ +GS V  +A   +G  +  V + G  IPE
Sbjct: 457 IQGRLPEVIGDRDRLIQVLVNLVSNALKFTEQGS-VTCRARTADGYVVIDVADTGIGIPE 515

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                VF +F  +      + +G GLGL+I +  +  HGG +S  S     +T    +P
Sbjct: 516 AEQHKVFEKFNQIGATLTNKPKGTGLGLAICKHIVESHGGRISYVSRFGSGSTFTFALP 574


>gi|220909137|ref|YP_002484448.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865748|gb|ACL46087.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1954

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 24/267 (8%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A R+L EK E L  + + K+ F+ ++S+ELR+PL +++    LL  +   +L  +Q +Y
Sbjct: 1235 QARRSLEEKAEQLSLSSKYKSEFLANMSHELRTPLNSLLILAKLLADNPEQNLTERQVEY 1294

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I +S   LL L+NDILDLA +++G + ++   I  ++L  ++++S        N+  
Sbjct: 1295 AATIFSSGNDLLELINDILDLAKIESGTIAVDIEPISFSELGRDLERSFREVAINRNLDF 1354

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----------------STVILKA 712
            +V  S+     F  D +RL QI   +L+NA  F+  G                 T + +A
Sbjct: 1355 QVQFSELLPARFHTDPKRLRQILKNLLANAFKFTEAGHVRLTVEPAVAGWSADQTFLNQA 1414

Query: 713  AR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            AR     + G   F V + G  IP D  + +F  F        RR  G GLGLSI     
Sbjct: 1415 ARVAPRGETGVIAFRVSDTGIGIPLDKQRIIFEAFQQADGTTSRRYGGTGLGLSISREIA 1474

Query: 766  NLHGGHVSISSSDEGVTTINCRIPSKE 792
             L GG + + S     +T    +P  E
Sbjct: 1475 RLLGGEIRLESQVGRGSTFTLYLPQLE 1501


>gi|312961180|ref|ZP_07775685.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6]
 gi|311284838|gb|EFQ63414.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6]
          Length = 771

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 7/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL         
Sbjct: 376 DITDRRAAEIALRTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDA----A 431

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  +V +I  +   LL L+N++LD+A ++AG + LN + + L  +L E    ++    
Sbjct: 432 KTQKAHVGHILRAGQHLLTLINEVLDIAKIEAGSLALNIAPLPLTQVLQEALTLVSPMAT 491

Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +  I ++ +      +G  VADRQRL Q+   +LSNA+ ++ +   V ++   D      
Sbjct: 492 DAGIELQPLPTLAADIG-IVADRQRLTQVLLNLLSNAIKYNRRDGQVSIEVTVDAQRIGV 550

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           SV + G  I  D    +F  F          G GLGL++ +S +    G + + S
Sbjct: 551 SVCDCGKGIAADHLGQLFTPFERLGADPNVEGSGLGLALSKSLLENMDGQLHVHS 605


>gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1490

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST-ILLN 622
            K + +K  F+  VS+ELR+PLT++     LL + K+   NS + +    I+   T  L+ 
Sbjct: 1255 KVERMKAEFISVVSHELRTPLTSMQAALSLL-SEKIIDPNSPEGEATIQIATEGTDRLVR 1313

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
            LVNDILDL  +++G ++L  S   + DL+      +    ++ NI +K I    L SF  
Sbjct: 1314 LVNDILDLERLESGKIRLKKSLCNVIDLIETAIAQMQEMANQANITLKFI----LCSFQI 1369

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735
             AD  R+LQ+ + +LSNA+ FS   ST+ L           G   F V++ G  IP    
Sbjct: 1370 EADADRILQVLTNLLSNAIKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIPSAHL 1429

Query: 736  KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             S+F RF  V  +    + G GLGL+I  S +  HGG +   S     +T    +P K
Sbjct: 1430 DSIFARFGQVDASDSRTKGGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLPKK 1487


>gi|160885841|ref|ZP_02066844.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
 gi|156108654|gb|EDO10399.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
          Length = 534

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 127/243 (52%), Gaps = 15/243 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL  S 
Sbjct: 283 VITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               + K+ Q YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ ++
Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRN 398

Query: 658 IATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714
              K    +  + V+    L +F    D++RL+Q+ +  ++NA+ F++KG  ++      
Sbjct: 399 YDIK---EDKPVPVLLAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKE 455

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           D  +  FSV + G  I  D    VF+RFV  N+     +G GLGLSI  S I   GG + 
Sbjct: 456 DTCEIEFSVADTGMGIEPDKVDRVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIG 512

Query: 774 ISS 776
           + S
Sbjct: 513 VES 515


>gi|332525160|ref|ZP_08401337.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332108446|gb|EGJ09670.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 751

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 8/242 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L  + E   ++   K++F+  VS+E+R+PL  ++G  DL+  + L   + +Q ++V+
Sbjct: 358 ERRLALEREIAARSSATKSAFLATVSHEIRTPLNAVLGVADLMTATPL---SDEQRRHVD 414

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               +   L  L++D+LDL  ++AG ++L     VL   L+ V   +  +     +R  +
Sbjct: 415 VFRHAGQTLAALIDDLLDLGKIEAGRLELVVEPFVLRASLDSVAALLQPRAAAKGLRFVL 474

Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729
             D  L ++V+ DR+R+ Q  + +L NA+ F+++G  V L+AAR   G   F+V++ G  
Sbjct: 475 DVDEDLPAWVSGDRRRVEQALTNLLGNAIKFTARGE-VSLQAARSAAGGVRFTVRDTGIG 533

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I       VF  FV    R  R   G GLGL+I  +     GG + + S     +T    
Sbjct: 534 IAPAQQALVFEPFVQADDRITRDYGGTGLGLAITRATAQQMGGDLRLESRPGVGSTFTLE 593

Query: 788 IP 789
           +P
Sbjct: 594 LP 595


>gi|282852926|ref|ZP_06262267.1| sensor histidine kinase/response regulator [Lactobacillus gasseri
           224-1]
 gi|282556034|gb|EFB61655.1| sensor histidine kinase/response regulator [Lactobacillus gasseri
           224-1]
          Length = 339

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 131/234 (55%), Gaps = 8/234 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS+++R+PLT+IIG+  LLK+S+   LN  Q++Y++     +  
Sbjct: 103 EEERQIEQSKDDLITNVSHDIRTPLTSIIGYFGLLKSSE---LNEDQAKYIKIAYDKALQ 159

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +  L  D+ +  T+ +    KL  + + +N +L +V      +  + NI   V++  +  
Sbjct: 160 MKALAEDLFEYTTLRSSTNNKLVLAPLHVNSMLEQVAAGFELEAEKKNIAFNVVTRPRDL 219

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
              AD + ++++ + ++SNA+ +    + + L A + N  F+   V+NNG  IP+   + 
Sbjct: 220 VIDADAKMIVRMLNNLISNALKYGHGATEINLIANKVNNKFVELRVENNGEQIPKKSLQK 279

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V ++   +  G GLGL+I +S ++LHGG +   S+ E +T+   ++P
Sbjct: 280 IFDRFYRVESSRNLKTGGTGLGLAITKSIVDLHGGTIKCQSTSE-LTSFIIQLP 332


>gi|160884384|ref|ZP_02065387.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483]
 gi|156110123|gb|EDO11868.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483]
          Length = 660

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 128/229 (55%), Gaps = 13/229 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQ 608
           +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+    +GS+  N++  +
Sbjct: 416 SEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKE 471

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNI 667
           Y + +  +S +LL L++D+LD++ +++G ++  Y    ++N   N +  +   K  + +I
Sbjct: 472 YADIVQTNSNLLLQLISDVLDISRLESGKLQFKYEWCELVNHCQNMITLTNRNKTMDVDI 531

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725
           ++++  +  +     D  RL QI   +L+NA+ F+  G ++ L    D      +FSV +
Sbjct: 532 KLQMPKEPYM--LYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTD 589

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + I
Sbjct: 590 TGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWI 636


>gi|138895943|ref|YP_001126396.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248834|ref|ZP_03147534.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134267456|gb|ABO67651.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211710|gb|EDY06469.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 468

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 128/251 (50%), Gaps = 21/251 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +A  +  +A+ K DE K  F+ +VS+ELR+PL+ I G+++ L  S L     ++  +
Sbjct: 222 RLAQAFNQMADAIAKEDERKREFLANVSHELRTPLSYIKGYSEAL-LSGLARTKEEEQSH 280

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATK--MH 663
           +  I   +  +  LV D+LDLA ++   + L  + +    V+ D+++  +  I  K    
Sbjct: 281 LRLIHRETERMERLVRDLLDLAQLEGQSVPLERAPVAFAQVIEDVMDMYRPIITQKRLTL 340

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI 720
             ++  ++I DG       D  RL Q+   +L NA+ ++ +G  V ++ +R     G+ +
Sbjct: 341 TCDLDYELIVDG-------DADRLEQVVRNLLDNAIRYTPEGGAVTVRLSRFSDTEGELV 393

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +++ G  IP+D    +  RF  V  A   +  G GLGL+IV+  + LHGG +   S  
Sbjct: 394 --IRDTGKGIPKDQLPLLGQRFFRVDRARTRKEGGTGLGLAIVKQIVALHGGAIQFDSDL 451

Query: 779 EGVTTINCRIP 789
              TT++ R+P
Sbjct: 452 GQGTTVSVRLP 462


>gi|260438167|ref|ZP_05791983.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876]
 gi|292809355|gb|EFF68560.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876]
          Length = 986

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 129/242 (53%), Gaps = 7/242 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L  + V + ++    + EK     KA+++K++F+  +S+E+R+P+  I+G  D++  S 
Sbjct: 375 LLLIMAVVNFIKNNIRIREKAVYALKANQLKSNFLASMSHEIRTPINAIMGMNDMILMS- 433

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               +    +Y   I ++   LL+++NDILD + +++G ++L  +T     +LN+V   I
Sbjct: 434 --DPDKAIKEYAGNIRSAGDTLLSIINDILDFSRIESGKIELVENTFSTISMLNDVIMMI 491

Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
             K     +   V +D ++  SF AD  ++ QI + +L NA+ ++ KGS  +I+K +   
Sbjct: 492 KGKAENKGLEFIVKADKEMPSSFKADEVKIRQILTNVLGNAVKYTEKGSIELIMKGSYVE 551

Query: 717 GDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             ++   +V + G  I E+    +FN+F          G GLGLSI + ++ + GG +S 
Sbjct: 552 DKYVLNVTVTDTGIGIKEEFKDKIFNKFERADTMSSVEGTGLGLSITKKYLGIMGGTISF 611

Query: 775 SS 776
            S
Sbjct: 612 DS 613


>gi|217979578|ref|YP_002363725.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217504954|gb|ACK52363.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 836

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 2/229 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQ 608
           + ER L +      +A  +K+ F+  VS+E+R+PL  IIGF +++   + G + N++   
Sbjct: 578 KVERELDDARREAERASALKSDFLAKVSHEIRTPLNAIIGFAEVIMEERFGPIGNARYKD 637

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I +S +++++LVND+LDL+ ++AG M L++  +  N ++ E    +  +     + 
Sbjct: 638 YLKDIHSSGSLVMSLVNDLLDLSKIEAGKMDLSFEAVDANRIVTECVSIMQPQASSARVV 697

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727
           I++    +L    AD + + QI   +LSNA+ F+  G  VI+  A  D       +++ G
Sbjct: 698 IRLSLAPQLPHIFADERSVRQIVLNLLSNAIKFTQGGGQVIVSTALNDENCAALRIRDTG 757

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             + E   K     F          G GLGL + ++ +  +    SI S
Sbjct: 758 VGMSEGDLKVALEPFGQAPRARGSGGTGLGLPLTKALVEANRASFSIKS 806


>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1349

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 15/250 (6%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           T+L   ++T   R+E AL  +  A+ R A++ K  F+ ++S+E+R+P+  IIG   LL+ 
Sbjct: 670 TVLAIQDITYKKRSEEAL--RYAAVERAANKAKGEFLANMSHEIRTPMNGIIGMASLLED 727

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN++Q   ++ IS+S+  LL ++NDILD + ++AG + L          + +V  
Sbjct: 728 T---PLNNEQKDLLQTISSSAESLLRIINDILDYSKIEAGKLDLERIEFDPRSTVEDVTA 784

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +A    +  ++I  +   K+ S  V D  RL Q+   +  NA+ F+SKG  VI++A  D
Sbjct: 785 LMAKTAEQKGLQITSLISHKVPSKVVGDPGRLRQVLMNLTGNAIKFTSKGE-VIVRALVD 843

Query: 716 NGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
             D       F + + G  +P+    S++  F        RR  G GLGL+I +    L 
Sbjct: 844 EEDRGGATLRFEIIDTGIGVPQSRLSSLYESFTQADPSTTRRYGGTGLGLTISKQLCRLM 903

Query: 769 GGHVSISSSD 778
           GG +   S +
Sbjct: 904 GGKIGAESKE 913


>gi|298480889|ref|ZP_06999084.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272912|gb|EFI14478.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 623

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 5/233 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q  
Sbjct: 378 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQQS 435

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     +  +
Sbjct: 436 YYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSENQ 495

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727
               +  +    V D QR+ Q+   +LSNA  F+ +G  T+      +    +FSV + G
Sbjct: 496 FLFTTSFESFRMVTDVQRMQQVMINLLSNANKFTKRGKITLDFSVNEETQMAVFSVTDTG 555

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             IP++    VF RF       Q  G GLGLSI +  ++   G + I     G
Sbjct: 556 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 606


>gi|256829207|ref|YP_003157935.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578383|gb|ACU89519.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1096

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 10/254 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++TD  R ER L +  +A   A+  K+ F+ ++S+E+R+PL  I+G   L ++     
Sbjct: 692 FTDITDRKRYERDLRQAKDAAEAANVAKSEFLANMSHEIRTPLNGIMGILHLFESQ---D 748

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +Q + +E  + S+  L  L++DILDLA +++G + +  +     +L           
Sbjct: 749 LPGEQKKLLELANTSAGRLNGLLSDILDLARIESGKLAIQSAPFAPRELRASTLGLFTLA 808

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--- 717
               N+ ++ I D  L S +  D  RL Q+   ++ N++ F+  G   +       G   
Sbjct: 809 AQGKNLSLEFILDDTLPSMLEGDESRLRQVLFNLVGNSLKFTRAGFVRVEVGPLPGGASP 868

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             +F V ++G  I +   K +F  FV       RR  G GLGL+IV+  + L  G + + 
Sbjct: 869 RILFCVTDSGPGISDHQLKDIFTPFVQGEDSYVRRHQGAGLGLAIVKRIVGLMDGCLCVD 928

Query: 776 SSDEGVTTINCRIP 789
           SS  G TTI   +P
Sbjct: 929 SSANG-TTICFSLP 941


>gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
 gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
          Length = 921

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     L S Q  Y++ I  S+  LL
Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQ----LTSTQKDYLQTIERSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L++ L+EV   +A   HE  + + + I       F
Sbjct: 340 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQF 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCK 736
           V D  RL QI + +L NA+ F+ +G+  I    R            +K+ G  I E    
Sbjct: 400 VGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRRQESLQVLLEIQIKDTGIGIAEAQQT 459

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F  F     +   Q  G GLGL I +  +   GG +S  S     TT  C +
Sbjct: 460 QLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCTV 513


>gi|302184841|ref|ZP_07261514.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 779

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   + +I  +   LL L+N++LD+A ++AG + L    + L+ +L E    ++    
Sbjct: 438 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLVLEPVSLSSVLEEALVLVSPMAA 495

Query: 664 ENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI ++ + +   ++G  VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 496 DANIELQPLPNLPDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAEQVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ DEG
Sbjct: 555 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 614

Query: 781 VTTINCR 787
                CR
Sbjct: 615 -----CR 616


>gi|184154584|ref|YP_001842924.1| two-component system histidine kinase [Lactobacillus fermentum IFO
           3956]
 gi|183225928|dbj|BAG26444.1| two-component system histidine kinase [Lactobacillus fermentum IFO
           3956]
          Length = 380

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 33/272 (12%)

Query: 535 NAQTMLTFVN-----VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           N Q ++T VN     +T +++ ERA +EK+         K+  + +VS++LR+PLT+IIG
Sbjct: 122 NQQHVITSVNALVDTITQAMQEERA-SEKS---------KDELITNVSHDLRTPLTSIIG 171

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTI-------LLNLVNDILDLATVDAGIMKLNY 642
           +        LG +   Q Q  E I   S I       + NLV D+ +   V      +N 
Sbjct: 172 Y--------LGLIEDHQYQSEEDIVKYSHIAYDKAKQMKNLVEDLFEYTKVQQHGAPVNL 223

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            T+ L  LL +V  S   +  +  + I V  +    S  AD ++L ++FS +++NA+ + 
Sbjct: 224 MTVDLGQLLEQVGASFELEADKKGMAINVSCEPTPLSITADPEKLGRLFSNLVANALKYG 283

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
              S + L A +     + +V ++G  IP +  K +F RF  V ++      G GLGL+I
Sbjct: 284 HGASYIHLTAKQLGEKVVITVADDGEKIPAESVKHLFERFYRVESSRNKATGGTGLGLAI 343

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V+S + LH G V+ + SD+  T     +P K+
Sbjct: 344 VQSIVELHHGSVT-ARSDDQETAFVVTLPVKQ 374


>gi|182420546|ref|ZP_02643812.2| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182379796|gb|EDT77275.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 821

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487
           +++G T +++ + +     +G+I   N A   +    E  L    +        N+    
Sbjct: 434 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546
           S+Y+NE         I+T   D+ +S +G ++L S S    S I   N    L +V V  
Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538

Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603
             + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     LL TSK    N 
Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598

Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L  ++  S+   +
Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              NI I   +D +      D  ++ +I   +LSNA+ F+  G  + +    D       
Sbjct: 659 ESKNIDIIFDTDCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADEAWVDIR 718

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IP  M + +F RF+ N     R   G G+GLS+V+S + LH G V +  S+E 
Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778

Query: 781 VTTINCRIPS 790
            +  +  +P+
Sbjct: 779 GSEFSILLPN 788


>gi|66045179|ref|YP_235020.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255886|gb|AAY36982.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 779

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 13/247 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 380 DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   + +I  +   LL L+N++LD+A ++AG + L    + L+++L E    ++    
Sbjct: 438 --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAA 495

Query: 664 ENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + NI +K +      +G  VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 496 DANIELKPLPSLPDDIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIAEQVTI 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ DEG
Sbjct: 555 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 614

Query: 781 VTTINCR 787
                CR
Sbjct: 615 -----CR 616


>gi|83858320|ref|ZP_00951842.1| two-component sensor histidine kinase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853143|gb|EAP90995.1| two-component sensor histidine kinase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 770

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 25/347 (7%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           T +++ +G+ +  PDG I+  NPA R ++   E+ L  G  I  +     R   E     
Sbjct: 402 TFENIIDGLILMRPDGSIQSLNPAARVMFGYAEDELI-GQDISVLLPDGVRQEREGAVRK 460

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---AL 555
           +   I      E+  +  T E  +++ ++       NA+ +   + ++D  RA+     L
Sbjct: 461 ISCFI------EQHLVGETFE--AEACMK-------NAEPLPVELTLSDVQRADGKLFGL 505

Query: 556 TEKNEALRKADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQYVEY 612
             ++ + RK  E+ K+ FV  V++ELR+PLT+++G   LL+         + K S  ++ 
Sbjct: 506 MIRDISARKQMEVMKDEFVSTVNHELRTPLTSMLGSLSLLQARLQAKFKDDQKASTLLDM 565

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S   L +LVNDILDL  + AG ++     +  +DL+ +V +S      E++++  + 
Sbjct: 566 AQRSCDRLHHLVNDILDLEKIAAGKLEYRMEEVPCDDLVQDVVESHRVLAEEHDVQFVLD 625

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIP 731
                     D  R  Q    +LSNA  +S  G TV IL    ++G    SV +NG  IP
Sbjct: 626 LKADDPPVRLDVSRFTQALVNLLSNAAKYSPAGETVTILTRRLEDGHIRISVADNGPGIP 685

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           E+    +F+RF        RR  G GLGL+I ++ +    G +S  +
Sbjct: 686 EEFQPRIFDRFSQADSSTTRRVGGNGLGLNITKNLVEAFDGEISFDT 732


>gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7822]
 gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822]
          Length = 2003

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 8/237 (3%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            + +   VR  +   E  EA  +A   K+ F+ ++S+ELR+PL  I+G+  + K  K  +L
Sbjct: 1526 LQLEQEVRERQRAEEIAEAANRA---KSEFLANMSHELRTPLNGILGYAQICKKDK--NL 1580

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            N +Q   +E I      LL L+NDILD++ ++A  M+L  +     D L  + +    K 
Sbjct: 1581 NEQQKNRIEIIHQCGEHLLTLINDILDISKIEARKMELCPTDFYFGDFLRGILEICQIKA 1640

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  I +       L   V  D +RL QI   +L+NA+ F+ KGS +  K +   G   F
Sbjct: 1641 EQKGISLIFQPLSSLPKIVQVDEKRLRQILINLLNNAVKFTEKGS-ITFKVSYQKGKVNF 1699

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
             V++ G  I  +  + +F  F       ++  G GLGLSI      + GG +++ SS
Sbjct: 1700 QVEDTGIGIAPNQLEEIFLPFQQVGEYSRKTEGTGLGLSISRQLAQMMGGTITVKSS 1756


>gi|255535846|ref|YP_003096217.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342042|gb|ACU08155.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 1200

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 129/240 (53%), Gaps = 8/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +K+  L ++ + K+ F+ ++S+ELR+PL +I+  + L+  S+   L+ +  +Y   + 
Sbjct: 519 IQQKSIELEQSTKYKSEFLANMSHELRTPLNSILLLSKLMTESE--DLDEQYVEYAAVMQ 576

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL L+++ILDL+ +++G M L    + L ++ ++++        + N+ +KV ++
Sbjct: 577 SSGQGLLTLIDEILDLSKIESGKMTLEIMDVPLAEITDDMRMLFLPMAKDKNLELKVETE 636

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIP 731
            +    +  D+ RL QI   +LSNA+ F+S GS + L+ + D      IF V + G  I 
Sbjct: 637 AQAPQMLQTDKLRLEQILKNLLSNAIKFTSTGS-ITLQVSGDEAHTKIIFKVIDTGIGIA 695

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +D  + VF  F       QR+  G GLGLSI      L GG +++ S++   +     +P
Sbjct: 696 KDKMRLVFEAFQQADGSTQRKYGGTGLGLSISRELARLLGGEITLESTEGKGSEFTLTVP 755


>gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
 gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 1452

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 135/259 (52%), Gaps = 11/259 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T V++ +  R++  L         A++ K+ F+ ++S+E+R+PL  I+G   LL+T++  
Sbjct: 1050 THVDINERKRSQADLLSAKVQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE-- 1107

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              N +Q +Y+   + S+  L  L++DILD++ ++AG M +  +   +  L + +++   T
Sbjct: 1108 -PNDEQKEYLAGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFDT 1166

Query: 661  KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
                  + +  I D +L  + + D  RL QI   ++ NA+ F+ KG  ++  +   + + 
Sbjct: 1167 DAQGKGLVLDFIWDDELPTALIGDEARLRQILFNLVGNAIKFTDKGEVLVEASLLPSPNT 1226

Query: 719  ----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHV 772
                 + +V + G  I E+  K +F  FV    ++  + +G GLGLSIV    +L GG +
Sbjct: 1227 SSVRVLLTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLASLLGGDI 1286

Query: 773  SISSSDEGVTTINCRIPSK 791
            SI S+    TT+   +P K
Sbjct: 1287 SIDSALGEGTTVYLSLPFK 1305


>gi|254487059|ref|ZP_05100264.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
 gi|214043928|gb|EEB84566.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
          Length = 1047

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 8/225 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K D+IK+ FV  VS+ELR+PLT+I G   L+  S    L     + +E    ++  L N
Sbjct: 681 KKLDQIKSEFVSTVSHELRTPLTSIKGALGLIDVSARDKLPETTMRLIEIARTNADRLTN 740

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSF 680
           +VNDILDL  + +G +  +   + + +++    Q +    + HEN +  ++       + 
Sbjct: 741 IVNDILDLEKISSGEVDFDLMPVNIGEIVEAAVQEMMPFAQTHENKLVCELPEQPVFAT- 799

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            ADR R +Q+ + ++SNA  +SS  + V +K  +     I  V+N G  +PE     +F 
Sbjct: 800 -ADRGRTMQVLANLISNACKYSSDHTEVCIKIEQLEDIAIVYVQNRGPGVPESFRNRIFQ 858

Query: 741 RFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            F S A     R   G GLGL+I    +   GG +   S   G+T
Sbjct: 859 AF-SQADGSDTRAKGGTGLGLNITRQIVRRQGGEIGFESIPGGLT 902


>gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
 gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
          Length = 798

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 130/239 (54%), Gaps = 10/239 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           ++T+  R    L +      KA++ K+ F+ ++S+E+R+PL  I+GF +LL K  K    
Sbjct: 406 DITEQKRTYLELNKAKYEAEKANKSKSEFLANMSHEIRTPLNGIMGFVNLLYKDEK---- 461

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + K+ + ++ I  SS  L+++VNDILD + +++G++ +      + D +++       + 
Sbjct: 462 DIKKQEKLKIIKDSSYTLIDIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQRA 521

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFI 720
            E NI IK+  D K+  F+  D  R  Q+FS +LSNA+ FS++ S V +     DN + I
Sbjct: 522 KEKNITIKLSIDDKIPKFIEGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTNEI 581

Query: 721 F-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +  V ++G  I      ++F  F        R+  G GLGLSIV+  + L GG + ++S
Sbjct: 582 YCEVLDSGVGISPSKTDTIFEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVNS 640


>gi|209547395|ref|YP_002279313.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209538639|gb|ACI58573.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 2099

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 16/244 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ KQ ++
Sbjct: 1406 QARRALEEKATELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEF 1465

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I  + T LLNL++DILDL+ +++G + ++   I +++LL  + +    +    ++  
Sbjct: 1466 AKTIHGAGTDLLNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRSLSF 1525

Query: 670  KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717
             V   G +  S + D +RL QI   +LSNA  F+++G   +  A   +G           
Sbjct: 1526 AVEIGGDVTKSIITDSKRLQQILKNLLSNAFKFTAQGGVTLRVALAASGWSPDHPSLRHA 1585

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F V + G  IP +  + +F  F        R+  G GLGL+I     NL GG + 
Sbjct: 1586 PSVIAFEVVDTGIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQ 1645

Query: 774  ISSS 777
            + S+
Sbjct: 1646 LRST 1649


>gi|49477415|ref|YP_036048.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49328971|gb|AAT59617.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 375

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 136/246 (55%), Gaps = 13/246 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL +   +
Sbjct: 128 TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 186

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L N V+D+L+   ++   ++L+ S + +  L+ ++      ++ + 
Sbjct: 187 CEQYVSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 246

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+   +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN
Sbjct: 247 NMSFCIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKN 305

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778
            G  IP++    VF +F    +RG++       G G+GL+I +S   LH G +++ S++ 
Sbjct: 306 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDITVRSNEK 361

Query: 779 EGVTTI 784
           E V TI
Sbjct: 362 ETVFTI 367


>gi|148257503|ref|YP_001242088.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146409676|gb|ABQ38182.1| putative sensor histidine kinase with multiple PAS/PAC and a
           response regulator receiver domain [Bradyrhizobium sp.
           BTAi1]
          Length = 1202

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 6/235 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISAS 616
           + +AL + D  K  F  +VS+E R+PLT ++G   D+L  S   SL  ++   +E    +
Sbjct: 320 RAKALAEIDRAKTEFFANVSHEFRTPLTLMLGPLEDVLTRSPALSLEDRER--LEVAQRN 377

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL LVN +LD + ++AG  +  Y+   L  L  ++     + +    +++ V     
Sbjct: 378 ALRLLKLVNTLLDFSRIEAGRAQGAYAPTDLARLTADLAGVFRSAVESAGLKLIVDCPPL 437

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 DR+   +I   +LSNA  F+S G  + ++     G+F  S+++ G+ IP+D   
Sbjct: 438 PEPAYVDREMWEKIVLNLLSNAFKFTSSGE-IEVRLIVSQGNFELSIRDTGTGIPQDELP 496

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF  V++A      G G+GL++V+    LH G V ++SS    +T   RIP
Sbjct: 497 KLFERFHRVADARGRTHEGSGIGLALVQELARLHAGSVDVTSSLGQGSTFTVRIP 551


>gi|332980938|ref|YP_004462379.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332698616|gb|AEE95557.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 471

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 4/236 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+   +  L K D+++   + +VS+ELR+PL+ I G+++ LK   +     +Q QYV+ I
Sbjct: 234 AINYMSSELAKLDQMRRDLIANVSHELRTPLSLIRGYSEALKDGVVKD-TEQQKQYVDII 292

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L  LV+D+LDL+ +++G + +N     ++  ++E+ +       +N I +   +
Sbjct: 293 LDETARLQKLVSDLLDLSQLESGSLSINPHPFSISRCIHEICRRFEAAAAKNQIELTASA 352

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +    AD  R+ Q+   ++ NA++ +     +I+ A + +G     V + G  I  D
Sbjct: 353 DDNIIVH-ADEGRIEQVLYNLIQNAINHTPTHGRIIVSAEKHDGKAFIQVSDTGRGISPD 411

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F++F    H   R+G GLGL+I    +  HG  +++ S     TT    +P
Sbjct: 412 DLPHIFDKFYKGEH--NRKGTGLGLTIARGILTAHGSDITVKSQPNQSTTFAFYLP 465


>gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 730

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 173/368 (47%), Gaps = 40/368 (10%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI-----RNIAATCSRYYNESD 495
           D ++  + V G DG++  +N  F       E+ L P  HI     ++I +        S 
Sbjct: 80  DAMNSILVVVGVDGQVSQTNRVFTEDLHWTEDEL-PQIHIDSLFPKDILSGIREKNGASS 138

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQ----------TMLTFVN 544
           G     +++ S+   R  L+  + L  S+  L  ++  +   Q           +LT  +
Sbjct: 139 G-----SLVVSYITHRGHLECEMPLHRSNGALTEAVYLVKGEQFYSHQGKLQGILLTATD 193

Query: 545 VTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +++  + E AL +   AL+KA       ++ K  F+  +S+E+R+PL  IIGFT L   S
Sbjct: 194 ISELRQREVALRQSEIALQKAKAEADAANQAKGDFLATMSHEIRTPLNAIIGFTKLCLHS 253

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L  KQ  Y+  +  +S  L +L+ND+LDL+ ++AG +++      LN +L+ V+  
Sbjct: 254 E---LTLKQRDYLNKVDVASHSLSHLINDVLDLSKIEAGKLEMERVPFNLNQVLSNVRHV 310

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---- 712
           +   + +  +   + +      + + D  RL Q+   ++ NA+ F+ KG   +  +    
Sbjct: 311 MWFDVAKRGLTFSMGVEPSVPANVIGDPLRLQQVLVNLVGNAIKFTDKGEVSVTVSRKKS 370

Query: 713 -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
            AR +   IF V + G  + +D    +F+++        RR  G GLGL+I +  +NL  
Sbjct: 371 RARKSVTLIFRVCDTGIGMTDDQLSQLFSKYHQAEPSTSRRFGGTGLGLTISQKLVNLMK 430

Query: 770 GHVSISSS 777
           G + I+S+
Sbjct: 431 GRIHINSA 438


>gi|108756960|ref|YP_634851.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
 gi|108460840|gb|ABF86025.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
          Length = 671

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 11/237 (4%)

Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+  A   LR A E K+SF+   S+ELR+PL    G   L      G   +   + 
Sbjct: 413 RDITERQRAETALRLASEAKDSFLAAASHELRTPLAAAKGHAHLALLKLGGETEAGPGKS 472

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+     +  LV D+LD++ + AG + L      L+ L++E +  +A     + I +
Sbjct: 473 LKIINRQIDRMAKLVEDLLDISRLQAGRLSLELERFDLSHLVHETRDRMAVLSQGHEIHV 532

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
           +  SD   G++  DR RL Q+ + +LSNA+ +S +G  V ++   ++ + +  SV + G 
Sbjct: 533 EA-SDQLEGTW--DRGRLDQVLTNLLSNALRYSPEGGPVWVRVQGEHDEGVHLSVTDTGV 589

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS---SDEGVT 782
            IP++    +F RF   AH  +  G+GLGL+I +  +  HGG + + S   + EG T
Sbjct: 590 GIPKEKQGLIFERF-GRAHGSKYGGLGLGLTISQGIVEQHGGRIWVESPGVAGEGST 645


>gi|303247088|ref|ZP_07333363.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491514|gb|EFL51399.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 871

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 133/255 (52%), Gaps = 14/255 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   R E +L         A   K+ F+ ++S+E+R+PL  ++G   LL+TS+L   +
Sbjct: 468 DVTGQKRTEDSLRLAKSEAEAASLAKSEFLANISHEVRTPLNGVLGMLQLLETSRL---S 524

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++ +++V    A    L+ ++ DILD + ++AG + L      +  ++ +V   ++ +  
Sbjct: 525 AEDAEHVATALACGRGLVRVLADILDFSLIEAGRLVLRRDACDIRSVIADVFGVLSLECE 584

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR-DNGD 718
           +  +   +   G + +F+A D  RL QI   ++ NA+ F+ +G+   +V L + R +   
Sbjct: 585 KKELCATLDVAGDVPAFIATDAARLRQILFNVVGNAVKFTPRGTVHLSVSLASRRGEETH 644

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F+V++ G  IPED  +++F  F        R+  G GLGL IV+  + L  GH+++ S
Sbjct: 645 LLFAVRDTGIGIPEDRIEAIFEPFTQIDGSLTRKYGGTGLGLGIVKRLVGLLDGHITVES 704

Query: 777 SDEGVT----TINCR 787
              G T    TI C+
Sbjct: 705 EPGGGTEFAFTIRCQ 719


>gi|260223382|emb|CBA33893.1| hypothetical protein Csp_B21310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 769

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 16/230 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           NE    A+  K+ F+ ++S+ELR+PL  ++G   LL+++ +   N++Q  Y++  + S+ 
Sbjct: 194 NEKADAANAGKSQFLANMSHELRTPLNGMLGMLSLLESTPV---NAQQDDYIQTANRSAK 250

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+L+NDILD + ++AG M L   ++ L  L+ +V+  +     E  + + V +D  L 
Sbjct: 251 HLLSLLNDILDASALEAGKMTLKPESVHLPSLVGDVQALMRPVALEKRLVLSVKADKDLP 310

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDFIFSVKNNGS 728
            +V AD  R+ QI   ++SNA+ FS  G+  +         LKA  D+      V + G 
Sbjct: 311 RWVLADGTRVKQIMLNLVSNALKFSEHGTVSVEVFSPAGEELKAG-DDVALKIRVTDEGM 369

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +  D+   +F RF        RR  G GLGL I  S     GG + +SS
Sbjct: 370 GMSADVLAKLFQRFEQGNASSARRHGGTGLGLEISRSLARRMGGDIEVSS 419


>gi|157373431|ref|YP_001472031.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157315805|gb|ABV34903.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 931

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  E    A + K+ F+  +S+E+R+P+  ++G   LL+ +   +L+  Q  +++  
Sbjct: 393 ALDDARETAEAAAQSKSEFLACMSHEIRTPMNGVLGMLTLLERT---ALDQSQRNHLDTA 449

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVI 672
             S+  LL L+NDILD + +++G   +      L +LLNE  + +A +  E  I  +  I
Sbjct: 450 QGSARNLLGLINDILDFSKIESGKFPIESVNFSLTNLLNETIRPLAIRAQEKGIELVSDI 509

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD-NGDFIFSVKNNGSSI 730
           +D    SF  D  R+ Q+ + ++ NA+ F+ KGS TV +K   D      FSV++ G  +
Sbjct: 510 TDITSQSFKGDPTRISQVLTNLIGNAIKFTEKGSITVYVKQNDDIEPRLNFSVEDTGIGL 569

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             +  + +F  F        R   G GLGLSI +    L GG +S+ S++
Sbjct: 570 ASNQLEKLFQPFTQADSSTTRHFGGTGLGLSIAKRLTELMGGSISVVSTE 619


>gi|161522571|ref|YP_001585500.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
 gi|189348557|ref|YP_001941753.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160346124|gb|ABX19208.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
 gi|189338695|dbj|BAG47763.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 760

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 136/272 (50%), Gaps = 19/272 (6%)

Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
           P P A     +++ V VT+ V A   L   N         LR A+  K+ F+  + +ELR
Sbjct: 312 PQPQADGIGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELR 371

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++ S+ G     +   +  I      ++ L++D+LD++ +  G ++L 
Sbjct: 372 NPLTPISLALELVR-SREGHATPNE---IAIIQRQLDHMVRLIDDLLDVSRITRGKIELK 427

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + + D+++   +  +  + +   R+ V  D  +     D  RL Q+ + +L+NA  +
Sbjct: 428 KEAVRIGDIVDRAVEVASPLLEQRRHRLHVDIDADVRCH-GDPVRLSQVVANLLTNAAKY 486

Query: 702 SSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           ++ G  + L  AR +GD  +  V+++G+ IP D   S+F  F        R   G+G+GL
Sbjct: 487 TAPGGDIGLHVARSDGDTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGL 546

Query: 759 SIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           ++V+SF+ LHGG V   S+  G+ +T    +P
Sbjct: 547 ALVKSFVMLHGGTVRADSAGPGLGSTFTVTLP 578


>gi|86146354|ref|ZP_01064678.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
 gi|85835833|gb|EAQ53967.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
          Length = 937

 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQTDYLQTIERSANNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           +++NDILD + ++AG + L          L EV    AT  HE  + + +  D K+    
Sbjct: 341 SIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVPPGV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+ +G    S  +   + D+ +  F V++ G  I E    
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTGIGISERQQA 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  ++  GG +S++S
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 502


>gi|295087894|emb|CBK69417.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 869

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G  + + +Q++
Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727
            + +        D  RL Q+ + +++NA  F+S G   I     D+   G     V++ G
Sbjct: 748 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I E+  + +F RF    +  Q  G GLGLSI ++ I    G +S++S     T    R
Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863

Query: 788 IPS 790
           +P+
Sbjct: 864 LPN 866


>gi|237720654|ref|ZP_04551135.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229450405|gb|EEO56196.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 690

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 16/236 (6%)

Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L EKNE L        +AD++K  F+Q++S+E+R+PL  I+GF+ LL    L   + +
Sbjct: 446 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 505

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + ++   +  +S +L  LVNDILDL+ +++G   +N ++   N++   +  ++  +  E 
Sbjct: 506 KLEFSSLVQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 565

Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
              +K+    ++        D QRL Q+    L+NA   + KG   +  +  +  D I F
Sbjct: 566 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEYPDRITF 622

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           SV + G  IP D   SVF RF       Q  G GLGL+I  +      G V +  S
Sbjct: 623 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 676


>gi|228933206|ref|ZP_04096062.1| hypothetical protein bthur0009_16730 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826367|gb|EEM72144.1| hypothetical protein bthur0009_16730 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 288

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 136/246 (55%), Gaps = 13/246 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL +   +
Sbjct: 41  TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 99

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L N V+D+L+   ++   ++L+ S + +  L+ ++      ++ + 
Sbjct: 100 CEQYVSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 159

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+   +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN
Sbjct: 160 NMSFCIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKN 218

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778
            G  IP++    VF +F    +RG++       G G+GL+I +S   LH G +++ S++ 
Sbjct: 219 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDITVRSNEK 274

Query: 779 EGVTTI 784
           E V TI
Sbjct: 275 ETVFTI 280


>gi|160882190|ref|ZP_02063193.1| hypothetical protein BACOVA_00136 [Bacteroides ovatus ATCC 8483]
 gi|156112393|gb|EDO14138.1| hypothetical protein BACOVA_00136 [Bacteroides ovatus ATCC 8483]
          Length = 701

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 16/236 (6%)

Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L EKNE L        +AD++K  F+Q++S+E+R+PL  I+GF+ LL    L   + +
Sbjct: 457 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 516

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + ++   +  +S +L  LVNDILDL+ +++G   +N ++   N++   +  ++  +  E 
Sbjct: 517 KLEFSSLVQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 576

Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
              +K+    ++        D QRL Q+    L+NA   + KG   +  +  +  D I F
Sbjct: 577 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEYPDRITF 633

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           SV + G  IP D   SVF RF       Q  G GLGL+I  +      G V +  S
Sbjct: 634 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 687


>gi|332521556|ref|ZP_08398010.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332042955|gb|EGI79154.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 403

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 11/239 (4%)

Query: 543 VNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           VN+ ++    + L E KN+  ++ DE+ N F   VS++L+SPL+NI+  T LL+    G 
Sbjct: 159 VNLLETRLRNKRLNEIKNKLEKRNDEL-NKFAGVVSHDLKSPLSNILALTRLLEEENKGK 217

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L      Y+EY+  SS  L N ++  L     D  I +     I   DL+ + K+    K
Sbjct: 218 LTKDSKMYLEYLQDSSVELKNYIDATLAYYKNDELITQ-KKEVIPFEDLILKAKKIAVPK 276

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
            +     +++I    +G+   ++  +LQI   +L+NA+ +S K +T++    ++N DF  
Sbjct: 277 QN-----VELIYTQNVGNITINKPAVLQILVNLLTNAVKYSDKETTIVNIDFQENDDFYS 331

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F+VK+NG  IPED   +VF+ FV+  N       G G+GL+ V+  +    G ++++S+
Sbjct: 332 FTVKDNGRGIPEDKLNTVFDLFVTLGNKDNEGNLGTGMGLASVKKLVESQNGSITLNST 390


>gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           NCTC 11218]
          Length = 1268

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 129/245 (52%), Gaps = 11/245 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T++++ E+ L E  E   +A+  K+ F+ ++S+ELR+P+  I+G   LL+ ++   LN
Sbjct: 508 DLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILG---LLQIAQNTDLN 564

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+     ++  LL L+NDILD + V+AG M++      L +L++E    +++ + 
Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718
             ++ I    D  + ++ + D  RL QI   +  NA+ F+  G   V ++    +GD   
Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSIQTESHDGDRCV 684

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V + G  + E+  + VF  F        RR  G GLGLSIV+  + L  G V + S
Sbjct: 685 LRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVKS 744

Query: 777 SDEGV 781
             +GV
Sbjct: 745 K-QGV 748


>gi|260642402|ref|ZP_05415738.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622214|gb|EEX45085.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 613

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 122/233 (52%), Gaps = 5/233 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +R+++ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   ++  
Sbjct: 370 LRSDKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVE--GSTEEERQS 427

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L  +V  S++     ++ +
Sbjct: 428 YFQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDIVLLCRQVVASVSFSRQSSDNQ 487

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727
               +  +      D QR+ Q+   +LSNA  F+ KG  T+        G  +FSV + G
Sbjct: 488 FLFTTSFETYRMETDIQRMQQVIINLLSNADKFTKKGKITLDFSVDEKTGMAVFSVTDTG 547

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             IP++  K VF RF       Q  G GLGLSI +  ++   G + I     G
Sbjct: 548 CGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVSKWKGAIWIDPDYTG 598


>gi|119476961|ref|ZP_01617242.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2143]
 gi|119449768|gb|EAW31005.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2143]
          Length = 895

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 11/238 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL +  +AL+ A   K+ F+  +S+ELR+PLT ++GF+ LL  SK   +NSKQ +Y + 
Sbjct: 277 RALEKTQQALKLASTAKDDFLAKMSHELRTPLTTVVGFSRLLNQSK---MNSKQVEYSDN 333

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ ++ +LL+ +N++LD + + +  + +      L + +  +    A +     + + +I
Sbjct: 334 ITVAAELLLDTINNMLDFSKLQSSAVSIENIKFDLREAMEGLVAMHAYQAESTGLDLILI 393

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNG 727
            D  +    + D  R+ QI + +LSNA+ F+ +G  V    ++K   D+G     V ++G
Sbjct: 394 IDRNIPRLLLGDPTRIKQIVNNLLSNAVKFTKQGEVVLRVSLMKGENDDGSLSIEVIDSG 453

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             + E     +F  F        RR  G GLGL I +    L GG + I +SD GV T
Sbjct: 454 IGMDEKSQARLFQPFTQADDTITRRFGGTGLGLVICKQLAELMGGDIVI-NSDLGVGT 510


>gi|78221304|ref|YP_383051.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78192559|gb|ABB30326.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 661

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 17/231 (7%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISAS 616
           ++EA   A  +K  F+ ++S+E+R+P+  IIG T+L L+T     L+  Q + +E I +S
Sbjct: 268 RDEA-ESASRMKGEFLANMSHEIRTPMNAIIGMTELTLETP----LSPSQRENLEIIGSS 322

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +  LL L+NDILD + ++AG + L      L + +      +A + H   + + + ++  
Sbjct: 323 AESLLGLLNDILDFSRIEAGRLLLEKVPFDLRNTVEGALDVVAPQAHGKGLELILDVARD 382

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNG-DFIFSVKNNGS 728
              +F+ D  RL Q+   +LSNA+ F++KG  V LK  R      D+G   +F+V + G 
Sbjct: 383 LPEAFIGDPTRLRQVLINLLSNAVKFTAKGE-VGLKVERAPSSGTDDGVMLLFTVSDTGI 441

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            IP D    +F  F        R+  G GLGL+I  + +++ GG +S+ S+
Sbjct: 442 GIPADKLSLIFESFTQADGSTTRKYGGSGLGLAICRALVSMMGGDISVKSA 492


>gi|299145190|ref|ZP_07038258.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298515681|gb|EFI39562.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 701

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 16/236 (6%)

Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L EKNE L        +AD++K  F+Q++S+E+R+PL  I+GF+ LL    L   + +
Sbjct: 457 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 516

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + ++   +  +S +L  LVNDILDL+ +++G   +N ++   N++   +  ++  +  E 
Sbjct: 517 KLEFSSLVQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 576

Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
              +K+    ++        D QRL Q+    L+NA   + KG   +  +  +  D I F
Sbjct: 577 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEYPDRITF 633

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           SV + G  IP D   SVF RF       Q  G GLGL+I  +      G V +  S
Sbjct: 634 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 687


>gi|237714981|ref|ZP_04545462.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409069|ref|ZP_06085614.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229444814|gb|EEO50605.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353280|gb|EEZ02375.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 869

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G  + + +Q++
Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727
            + +        D  RL Q+ + +++NA  F+S G   I     D+   G     V++ G
Sbjct: 748 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I E+  + +F RF    +  Q  G GLGLSI ++ I    G +S++S     T    R
Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863

Query: 788 IPS 790
           +P+
Sbjct: 864 LPN 866


>gi|317484882|ref|ZP_07943772.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923864|gb|EFV45060.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 603

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 166/349 (47%), Gaps = 34/349 (9%)

Query: 434 KVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSRY 490
           K Q +TI D ++EGV V G  GRI+L NPA   L+   ++  + G     +  AA   + 
Sbjct: 255 KAQLKTILDVMNEGVLVIGEKGRIRLVNPALVRLFPQAKD--AEGKFPVEVIPAAEIQQA 312

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSV 549
            +E         ++++  D+ + +   +E   D +L    I P      +L      D  
Sbjct: 313 LDE---------LLSAPQDKPRLITLEVEPRPDMILSVQFIRPREAIHDVLAVAVFHD-- 361

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                ++E    +R    ++  FV +VS+ELR+PLT I G+ + L+ S      S  +++
Sbjct: 362 -----ISEMARLMR----VRKEFVANVSHELRTPLTAIAGYAETLRDSA-AEDPSICAKF 411

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  ++  +  +V D+L L+ +++G + +   T+    +L++V  +   +   +N+ +
Sbjct: 412 AETILRNAQHMGTMVEDLLKLSRIESGAVPMEMETVKAASILSDVTTACQPQTAAHNLTL 471

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNG--DFIFSVK 724
           +   D  L +  AD   + Q+F  ++ NA  ++ +GST+ +   +    NG  + +F + 
Sbjct: 472 ETDIDPAL-TVRADPHFIGQVFRNLIENACRYAPEGSTIKVSGGKRLDHNGLPEALFMIC 530

Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           ++G  IP+     VF RF     HR      GLGL+I +  +  HGG +
Sbjct: 531 DDGPGIPQADIARVFERFYRVEKHRSSPASTGLGLAICKHIVERHGGRI 579


>gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 864

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLN 622
           +A+  K+ F+ ++S+ELR+PL  I GF++++     G L +++  +Y   I +S   LL 
Sbjct: 611 QANHAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKEYAGDILSSGQHLLA 670

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILD++ ++AG M L +  + + +++++  + +  +  +  ++++V    +L    A
Sbjct: 671 LINDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLKMRVHLP-QLPDIQA 729

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCK--SVF 739
           D + L QI   IL+NA+ F+  G T+ + A   +      V + G  I P+DM +    F
Sbjct: 730 DYRALKQILLNILTNAIKFTPSGGTITVSAVPTDSFMHLYVADTGIGIAPKDMERLARPF 789

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + + N     + G GLGL++ +S I +H G + + S+    TT++  +P
Sbjct: 790 EQ-IENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVSVILP 838


>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
 gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
          Length = 1618

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 14/245 (5%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            TFV++TD  +AE+ L    E   +   +K++F+ ++S+E+R+P+  IIG + L   S   
Sbjct: 845  TFVDITDRQKAEQDLRLAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKS--- 901

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             LN +Q  YV  I  +   LL ++NDILD + ++AG + +     VL+ +L  V   +  
Sbjct: 902  GLNPRQHDYVSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVGY 961

Query: 661  KMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG 717
            K     + +   V +D    + V D  RL QI     +NA+ F+ +G  ++ ++    + 
Sbjct: 962  KAGAKGLELVCDVAADVP-PNLVGDSLRLGQILINFSNNAIKFTERGEISIAVRVQEQDA 1020

Query: 718  DFI---FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
              +   F V++ G  + PE M + +F  F        RR  G GLGL+I +S   L GG 
Sbjct: 1021 QRVRLRFEVRDTGIGLTPEQMGR-LFESFQQADASTTRRYGGTGLGLAICKSLAELMGGE 1079

Query: 772  VSISS 776
            V + S
Sbjct: 1080 VGVDS 1084


>gi|239907994|ref|YP_002954735.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797860|dbj|BAH76849.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1093

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 12/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++T+    E+AL    EA   A+  K+ F+  +S+E+R+P+  I+G  D+L  +   S
Sbjct: 694 LVDITERKAMEQALRRSKEAAESANRAKSEFLSTMSHEIRTPMNTILGMVDVLAGT---S 750

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L S Q+  V+ I  +   LL L+NDILDL+ ++AG M +   +  + +L  ++   +   
Sbjct: 751 LTSDQTHAVKSIELAGAGLLGLLNDILDLSQIEAGGMVIEEKSCDIVELTTQLADMMRPD 810

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDN 716
                + +++   G L         R+ QI   +L NA+ F+ +G  V+  A+     D 
Sbjct: 811 ADRKGLELRLEIRGDLPPRLFCCPDRIRQILVNLLGNAIKFTQQGHVVLEVASTPSLTDG 870

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                +V++ G  IP D    +F+RF    ++A+R Q  GVGLGL+I +    L GG ++
Sbjct: 871 PRLRLAVRDTGIGIPADKQAVIFDRFTQINASANR-QFGGVGLGLAICKKLAELMGGRIA 929

Query: 774 ISSS 777
           + S+
Sbjct: 930 VESA 933


>gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
 gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
          Length = 1441

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 14/224 (6%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K  F+  +S+ELR+PL  IIG +D L     G +N +  + +  I  S   LLNL+ND
Sbjct: 315 EQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLIND 374

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKVISDGK--LGSFV 681
           ILD A++  G + + +  + L  ++++V    Q +A +       +K+++D +  +   +
Sbjct: 375 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR------GVKLVNDLRENVPFVL 428

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  R++Q+F  ++ N+  F+  G+  I  A +D+ +   +V + G  IPED    +F  
Sbjct: 429 GDTGRIIQVFHNLIGNSCKFTHSGNISISAAVKDD-EVEVAVADTGIGIPEDKFDQIFLA 487

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F        R+  G GLGL++V+  +  HGG +S+ S +   TT
Sbjct: 488 FEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRENQGTT 531


>gi|148979754|ref|ZP_01815691.1| aerobic respiration control sensor protein ArcB [Vibrionales
           bacterium SWAT-3]
 gi|145961637|gb|EDK26936.1| aerobic respiration control sensor protein ArcB [Vibrionales
           bacterium SWAT-3]
          Length = 783

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 19/251 (7%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E++ KA   K +F+  +S+ELR+PL  IIG + +L  S+L +   KQ Q 
Sbjct: 264 RDITERKEHQESIEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQLTTEQRKQMQT 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S+  L N+ NDI+D+   D   ++L  + I   D + E++   A    +  +R 
Sbjct: 324 ---IKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVVEIESISALMAEQKGLRF 380

Query: 670 KV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVK 724
            +  +SD  +   V D  RL Q+   ++SNAM F+  G  V+  +A  +GDF      V+
Sbjct: 381 DLERLSDLPVAVEV-DGTRLRQVLWNLVSNAMKFTKDGGVVMTVSADIDGDFANITMEVE 439

Query: 725 NNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IPE   + +F  +    S        G G+GL++ +  IN+  G + + +S+EG 
Sbjct: 440 DTGIGIPESELEKIFAMYYQVKSGTDNLHAVGTGIGLAVSKQLINMMDGDIEV-TSEEGF 498

Query: 782 T---TINCRIP 789
               T++ R+P
Sbjct: 499 GSTFTVSIRVP 509


>gi|293372644|ref|ZP_06619026.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292632453|gb|EFF51049.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 862

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G  + + +Q++
Sbjct: 622 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 680

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 681 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 740

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727
            + +        D  RL Q+ + +++NA  F+S G   I     D+   G     V++ G
Sbjct: 741 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 798

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I E+  + +F RF    +  Q  G GLGLSI ++ I    G +S++S     T    R
Sbjct: 799 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 856

Query: 788 IPS 790
           +P+
Sbjct: 857 LPN 859


>gi|284054106|ref|ZP_06384316.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 385

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 21/211 (9%)

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF DLLK    G+LNS+Q   V++I  S   LL L+NDILDL+ +++G  +LN   + +
Sbjct: 1   LGFADLLKRQNSGTLNSRQLNQVQFIEKSGLHLLQLINDILDLSKIESGKTELNLELVNI 60

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           ++L +E  + +  +  +  + + + SD ++   + D++R+ QI   +LSNA+ F+ +G  
Sbjct: 61  HELCSECLKMVQPRADKKCLALSLESDYRITQALLDKRRVRQIIINLLSNAIKFTPEGGK 120

Query: 708 VILK-----AARDNGDF--------------IFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           V L       ++ +GD+                 V+++G  IP+D    +F  F  + ++
Sbjct: 121 VRLSGHLAYGSQIDGDYRPDCSPINDSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSS 180

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +  G GLGL + +    LHGG VS+ S 
Sbjct: 181 LTRRHEGTGLGLLLTKRLAELHGGTVSLQSQ 211


>gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1027

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 127/248 (51%), Gaps = 11/248 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +       A+  K+ F+ ++S+E+R+PL  ++G   LL+T+       +Q +Y+ 
Sbjct: 633 EQDLQKATHLAETANRAKSEFLANMSHEIRTPLNGVLGMLQLLETT---DQTDEQKEYLF 689

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              +S+  L  L++DILD++ ++AG M++      +    + +K+    +     +R++ 
Sbjct: 690 GAISSTKRLTRLLSDILDISRIEAGRMEIVEVEFNIKKTRDSIKELFNPEAKGKGLRLEF 749

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKN 725
             D  L    V D  RL QI   ++ NA+ F+ KG     ++++  ++  +   + +V++
Sbjct: 750 GRDEDLPLVLVGDEARLRQILFNLVGNAIKFTEKGEIRIDASLLPSSSDSHVRVLVTVRD 809

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPE+  K +F  FV       RR  G GLGLSIV   + L GG +SI S+    TT
Sbjct: 810 TGIGIPEEHLKGIFEPFVQAEASYTRRFQGAGLGLSIVRRLVKLMGGDISIDSTVGEGTT 869

Query: 784 INCRIPSK 791
           +   +P K
Sbjct: 870 VYLSLPFK 877


>gi|298530358|ref|ZP_07017760.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509732|gb|EFI33636.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1150

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 137/272 (50%), Gaps = 15/272 (5%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + + Q   +F+++T+  +  R L    EA   A + K++F+ ++S+E+R+P+  I+GF  
Sbjct: 649 MAHGQFAASFIDITELEKTRRELVRAKEAAEAASQAKSTFLANMSHEIRTPMNAILGFAQ 708

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+     +L    +++V+ IS ++  LL+++NDILD++ ++AG ++ N     L+    
Sbjct: 709 ILERDS--TLGPDHARHVQSISRNADHLLSILNDILDMSRIEAGQIEHNPRDFNLHQTFE 766

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +     + +    +G L  +  AD   L QI   +L NA  F+S+G      
Sbjct: 767 DLELMFIPRAVSKGLELTFEKNGSLPRAGHADPGMLRQIMVNLLGNACKFTSQGEVTFRI 826

Query: 712 AARDN--------GDFIFS--VKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           +A  N        G F  +  V+++G  I PE+M + +F+ F          G GLGL I
Sbjct: 827 SAEKNSEACGTGQGGFTLNVQVQDSGPGIDPEEMDR-IFDPFHQGGRDPGEGGTGLGLHI 885

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +  + GG +S+S   E  +    ++P ++
Sbjct: 886 SRKYARIMGGDLSVSPHTEKGSLFCLQVPVQQ 917


>gi|330916933|ref|XP_003297614.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1]
 gi|311329607|gb|EFQ94291.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1]
          Length = 2379

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 19/237 (8%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K EA R     K+ F+ +VS+ELR+PL  +IG ++LLK S L   N +Q+ Y + I   +
Sbjct: 1883 KEEAARA----KSLFLANVSHELRTPLNGVIGMSELLKASPL---NGEQTGYADSIRVCA 1935

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL+++ND+LD + ++AG M +    I LN+ + EV +++A    E    +K I   +L
Sbjct: 1936 DTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERG--LKTIEQLEL 1993

Query: 678  GS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSI 730
                  +AD  RL QI   +LSN+  F+ +GS  +       G    D   SV + G  I
Sbjct: 1994 NPEMLVMADPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGI 2053

Query: 731  PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
            P++  + +F  F  + ++      G GLGLSI ++ I N+  G V + S     TT+
Sbjct: 2054 PDEQKQKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTV 2110


>gi|262170675|ref|ZP_06038353.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           MB-451]
 gi|261891751|gb|EEY37737.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           MB-451]
          Length = 785

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725
            +     L S V  D  RL Q+   ++SNAM F+ +G  V+  +A       D    V++
Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQYADITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE+  + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEEEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|193084071|gb|ACF09741.1| two-component system sensory histidine kinase [uncultured marine
           group III euryarchaeote AD1000-40-D7]
          Length = 441

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 4/250 (1%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F N  D V+ E     + +A + A + K+ F+ ++S+ELR+PL  IIG++++L       
Sbjct: 187 FKNRIDYVKTEELKILREQA-QNASKAKSDFLANMSHELRTPLNAIIGYSEMLMEEAEDD 245

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                S  +  I++S   LL L+NDILDL+ ++AG M+L+     L   L++++ +    
Sbjct: 246 GLDTYSDDLSKINSSGEHLLTLINDILDLSKIEAGKMELHIEVFELEKHLSQIEATAKPL 305

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + +N  +  +     +     D+ +L QI   +LSNA  F+ KG TV L   +   D  F
Sbjct: 306 VEKNGNKFVIEKPDNIKKLTNDQTKLRQILFNMLSNAAKFTKKG-TVTLAITKSGDDIKF 364

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  + E     VF  F        +   G GLGL I +    + GG + + S + 
Sbjct: 365 AVVDTGIGMNEGQLGKVFEEFTQAESSTSKDYGGTGLGLPISKMMTEMMGGRMDVESEEG 424

Query: 780 GVTTINCRIP 789
             TT +  IP
Sbjct: 425 KGTTFSITIP 434


>gi|115391625|ref|XP_001213317.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624]
 gi|114194241|gb|EAU35941.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624]
          Length = 2330

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 31/260 (11%)

Query: 552  ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL +  EA +KA                  + K+ F+ ++S++LR+P+  +IG ++LL
Sbjct: 1849 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1908

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +KL   N +Q +YVE I   +  LL L+NDILD + ++AG MK++   + + + ++EV
Sbjct: 1909 KGTKL---NREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1965

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
             +++     +  +      D      V   D  RL QIF  +LSN+  F+ KGS TV  +
Sbjct: 1966 VRALRYTHRDRGLETIEDLDKVPPDLVVFGDPVRLHQIFMNLLSNSYKFTPKGSVTVAAR 2025

Query: 712  AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
              R+    +    +V + G  IPE+    +F  F S A     R   G GLGLSI ++ I
Sbjct: 2026 VTREGKGRVRLECAVTDTGIGIPEEQKSRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2084

Query: 766  -NLHGGHVSISSSDEGVTTI 784
             ++ GG + + S+    TT+
Sbjct: 2085 EDVLGGAIWLDSTPGKGTTV 2104


>gi|325915918|ref|ZP_08178214.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537885|gb|EGD09585.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 673

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 131/249 (52%), Gaps = 30/249 (12%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYIS 614
           + +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL +  + G  N K    +  I+
Sbjct: 282 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKG---LSVIA 337

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+     L++D+LDL+++  G ++L   ++   DL  +V+++++T+        ++ +D
Sbjct: 338 SSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLAEQVREALSTQ--------ELAAD 386

Query: 675 GKLGSF-----------VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           GK               + D  RL Q+   +LSNA+ F+     + +   RD+G  + SV
Sbjct: 387 GKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIERDDGHLLVSV 446

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  I  +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G 
Sbjct: 447 RDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGQ 506

Query: 782 -TTINCRIP 789
             T   R+P
Sbjct: 507 GATFTVRLP 515


>gi|302542098|ref|ZP_07294440.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302459716|gb|EFL22809.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1823

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1313 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1372

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1373 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1432

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1433 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDGGAVELVIRPAGVDVPNAIREQLLEH 1492

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                    D I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1493 GALRDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1552

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1553 LLGGEIHAASEPGRGSTFTLYLP 1575


>gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii]
          Length = 1425

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 14/224 (6%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K  F+  +S+ELR+PL  IIG +D L     G +N +  + +  I  S   LLNL+ND
Sbjct: 315 EQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLIND 374

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKVISDGK--LGSFV 681
           ILD A++  G + + +  + L  ++++V    Q +A +       +K+++D +  +   +
Sbjct: 375 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR------GVKLVNDLRENVPFVL 428

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  R++Q+F  ++ N+  F+  G+  I  A +D+ +   +V + G  IPED    +F  
Sbjct: 429 GDTGRIIQVFHNLIGNSCKFTHSGNISISAAVKDD-EVEVAVADTGIGIPEDKFDQIFLA 487

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F        R+  G GLGL++V+  +  HGG +S+ S +   TT
Sbjct: 488 FEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRENQGTT 531


>gi|303327943|ref|ZP_07358382.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302861769|gb|EFL84704.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 825

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 18/244 (7%)

Query: 557 EKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           E N ALR A E        K+ F+  +S+E+R+P+  I+G   LL  +    L+ +Q  Y
Sbjct: 435 ELNRALRLAKEEAEAGTRAKSDFLARMSHEIRTPMNAILGMCHLLLNT---GLSEQQRDY 491

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +     ++  LL+++NDILD + +++G   +  +   L ++L+ ++     +  E  IR+
Sbjct: 492 LCKTRQAARNLLDIINDILDFSKIESGKFDVETAPFPLAEMLDGIRNVAGVRAAEKGIRL 551

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVK 724
            V +   + G  V D  R+ Q+   ++SNA+ F+ +G   +  + R    D+   +F V+
Sbjct: 552 SVAASPDMPGELVGDALRVSQVLINLVSNAVKFTERGEVAVSVSPRHRREDSLLALFEVR 611

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  +  +    +F  F        RR  G GLGL I +  + + GG +S+ SS+ G  
Sbjct: 612 DTGIGMSREEVARIFRPFTQTDTSITRRYGGTGLGLVICKELVEMMGGKISV-SSEPGRG 670

Query: 783 TINC 786
           +I C
Sbjct: 671 SIFC 674


>gi|298483471|ref|ZP_07001648.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270419|gb|EFI12003.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 869

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G  + + +Q++
Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727
            + +        D  RL Q+ + +++NA  F+S G   I     D+   G     V++ G
Sbjct: 748 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I E+  + +F RF    +  Q  G GLGLSI ++ I    G +S++S     T    R
Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863

Query: 788 IPS 790
           +P+
Sbjct: 864 LPN 866


>gi|160886260|ref|ZP_02067263.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|260173623|ref|ZP_05760035.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921886|ref|ZP_07918126.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108145|gb|EDO09890.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|313695761|gb|EFS32596.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 869

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G  + + +Q++
Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727
            + +        D  RL Q+ + +++NA  F+S G   I     D+   G     V++ G
Sbjct: 748 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I E+  + +F RF    +  Q  G GLGLSI ++ I    G +S++S     T    R
Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863

Query: 788 IPS 790
           +P+
Sbjct: 864 LPN 866


>gi|37519945|ref|NP_923322.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35210937|dbj|BAC88317.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 577

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 129/282 (45%), Gaps = 21/282 (7%)

Query: 522 SDSVLEYSI---IPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI-------- 568
           SD V  + +   +PL  P    +  F   TD    +RA  E+   L +  +         
Sbjct: 288 SDGVYRWQLGRALPLRDPQGNILRWFGTCTDIDDQKRAEQERTHLLERERQARAEAEAAN 347

Query: 569 --KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+  +S+ELR+PL  IIG+T +L+   L      Q++ +E I  +  +   L+ D
Sbjct: 348 RAKDEFLAMLSHELRTPLNPIIGWTQMLRRGNLTP--EMQAKALETIERNGKLQNQLIED 405

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADR 684
           +LD++ +  G   +    I L  +L+   +++     +  + +    +         AD 
Sbjct: 406 LLDISRIIRGKFSIAPIPIELPPVLHSAIEAVRNLAEQKEVLLDCRCEPSALNRQVSADP 465

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   +L+NA+ F+ KG  V +  A D+ +   +V++NG  I  +    +F RF  
Sbjct: 466 TRLQQVIWNLLTNAIKFTPKGGRVEVDLAGDSANLYVAVRDNGMGIAPEFLPYMFERFRQ 525

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
              R  R+  G+GLGL IV   + LHGG V   S  EG   +
Sbjct: 526 ADSRSTRKEGGLGLGLFIVRHIVELHGGMVQAESEGEGKGAV 567


>gi|298241538|ref|ZP_06965345.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554592|gb|EFH88456.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 757

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ +  K++F+   ++ELR+PLT I   T LLK   +     + +  +  +    T
Sbjct: 523 NSARKELERRKDTFISMANHELRTPLTAIKIQTQLLKKRLVRQGLHEAAAALSRVEEPLT 582

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +L  LV D+LD+  + AG ++ ++  + L+ LL +V  S   +M   +I   +   G + 
Sbjct: 583 LLERLVGDLLDVTRIQAGRLEYHWEPVDLDALLQDVT-STTQQMDPTHI---IAVRGTIS 638

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             +  D+ RL Q+F  ++SNA+ ++     + ++A+         V+++G  IP+++C+ 
Sbjct: 639 RLLLGDKDRLAQVFLNLISNAIKYAPDALLIDIEASASAETATVVVRDHGIGIPKELCEK 698

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF  VSN  +    G+G+GL IV   +  HGG +++ S     +T +  +P
Sbjct: 699 IFERFYRVSNPSQLMVPGLGMGLCIVTEIVKQHGGTITVDSEVGKGSTFHVTLP 752


>gi|170740901|ref|YP_001769556.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195175|gb|ACA17122.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 984

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 10/226 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K  F+  +S+E+R+PL+++IG+T++L       L  +Q      I ++ + LL +V
Sbjct: 498 ASQAKTDFLASMSHEIRTPLSSVIGYTEMLLDD--AELTQRQHLQASRIRSAGSALLTVV 555

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
           +DILD + ++AG + L+     L+ L+      +        + I+V  D  L  + V D
Sbjct: 556 DDILDFSKIEAGQVDLDLVPFALDGLIENAVAIVRQLAERKGLEIRVELDPALPRALVGD 615

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI--FSVKNNGSSIPEDMCKSVF 739
           + RL QI    L+NA+ F+ +G  V+   KA    G +   FSV + G  I  +    +F
Sbjct: 616 QNRLRQILLNFLNNALKFTRRGRVVLAVEKAGDGAGGWPIRFSVTDTGIGIAPEQQARLF 675

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
            RF  V  + R +  G GLGL+I +  I L GG + + S+  EG T
Sbjct: 676 KRFSQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVRSAPGEGST 721


>gi|217977515|ref|YP_002361662.1| integral membrane sensor signal transduction histidine kinase
           [Methylocella silvestris BL2]
 gi|217502891|gb|ACK50300.1| integral membrane sensor signal transduction histidine kinase
           [Methylocella silvestris BL2]
          Length = 518

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 133/260 (51%), Gaps = 10/260 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNE--ALRKADEI---KNSFVQHVSYELRSPLTNIIG 589
           +A   L+F    D + AE   ++ N   A R+A+E    K+ F+  +S+ELR+PL  I+G
Sbjct: 223 SALEALSFQAEKDDLIAELEQSKANSDLARRRAEEANLAKSHFLATMSHELRTPLNAILG 282

Query: 590 FTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           F++++K    G+ + +   +Y   I AS   LL L+N+ILDL+ ++AG ++L    + L+
Sbjct: 283 FSEVMKGELFGAHIVASYKEYSNDIHASGHHLLMLINEILDLSRIEAGRLELKEEAVALD 342

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++ +    +A +  +  + I    +  L    AD + + Q+   +LSNA+ F+  G  V
Sbjct: 343 HIVEDCHHLLALRAKKRGVTITEAIEADLPRIRADERAVRQMTLNLLSNAVKFTPPGGRV 402

Query: 709 ILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFI 765
            ++      G    +V+++G  IPE+    V + F     A +    G GLGL IV+  +
Sbjct: 403 RIRIGWTAAGGQYLAVRDSGPGIPEEEIPIVMSSFGRGALARKNAEEGSGLGLPIVKGLV 462

Query: 766 NLHGGHVSISSS-DEGVTTI 784
            LH G   + S+  EG   I
Sbjct: 463 ELHEGTFILKSNVGEGAEAI 482


>gi|304321187|ref|YP_003854830.1| non-motile and phage-resistance protein [Parvularcula bermudensis
           HTCC2503]
 gi|303300089|gb|ADM09688.1| non-motile and phage-resistance protein [Parvularcula bermudensis
           HTCC2503]
          Length = 754

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 138/251 (54%), Gaps = 11/251 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ ++VR  R  TEK  A ++A+  K+ F+ ++S+ELR+PL  I GF++L+K    G L 
Sbjct: 470 DLREAVR--RYETEKLNA-QEANRAKSEFLANMSHELRTPLNAINGFSELMKEELFGPLG 526

Query: 604 SKQSQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            K+  YVEYI    AS + LLNL++DILDL+ ++AG + L+   + L+ LL E  + +  
Sbjct: 527 HKK--YVEYIKDIHASGSHLLNLIDDILDLSKLEAGKLDLDLCQVDLDRLLKESLRLVEM 584

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +M E ++  + ++D  + S  AD + + Q+   +LSNA  F+ +G  V +    D     
Sbjct: 585 QMREASLEFRSLTD-HIPSVWADPRAVKQVILNVLSNAQKFTPQGGAVTVTTLVDLTTVT 643

Query: 721 FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSD 778
             + + G  +  +  + +   F +++ H  +  RG GLGL++ +S +    G ++++S  
Sbjct: 644 ILIADTGIGMTPEQLEKLGQPFELADDHFSRASRGTGLGLALSKSLMEAQNGLLAVTSEP 703

Query: 779 EGVTTINCRIP 789
              T     +P
Sbjct: 704 RRGTVAAICLP 714


>gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1059

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 10/255 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT     ERAL+   +    A+  K++F+  +S+E+R+PL  I G  +LL+ S   +L+
Sbjct: 514 DVTPLKETERALSTAKQEAESANHAKSAFLATMSHEIRTPLNGITGMIELLQRS---ALS 570

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q Q VE IS  S +L++++NDILDL+ ++AG + L  +      LL  + + +  +  
Sbjct: 571 VEQRQQVETISKCSVVLMDILNDILDLSKIEAGQLVLERAPFSPTQLLLNLLEVMQPQAR 630

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720
              + +++  D KL S  + D  RL Q+   ++ NA+ F+ +G   I     +  D I  
Sbjct: 631 NKELDLQLNMDEKLPSTMLGDATRLRQVALNLIGNAIKFTPRGWVKISLLVHERIDDIVW 690

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V++ G  I ++    +FN F        R   G GLGL+I +  +    G +S++S
Sbjct: 691 VELAVQDQGIGIADEKLVHLFNPFTQADSSITRNYGGTGLGLAISKRLVEAMAGAISVTS 750

Query: 777 SDEGVTTINCRIPSK 791
            +   T     +P +
Sbjct: 751 IEGKGTHFRVTLPMQ 765


>gi|260170735|ref|ZP_05757147.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315919071|ref|ZP_07915311.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313692946|gb|EFS29781.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 642

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 5/233 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q  
Sbjct: 399 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQQS 456

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     ++ +
Sbjct: 457 YYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSDNQ 516

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727
               +  +    V D QR+ Q+   +LSNA  F+ +G  T+      +    IFSV + G
Sbjct: 517 FLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTDTG 576

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             IP++    VF RF       Q  G GLGLSI +  ++   G + I     G
Sbjct: 577 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWRGSIWIDPDYTG 627


>gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 1053

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 12/252 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
           Q  +   +VT    AE+ L E      +A E+K+ F+ ++S+E+R+P+  IIG + L LK
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T     L  KQ  YV  I +S+T+LL ++NDILD + ++AG + + +    L ++L+ V 
Sbjct: 326 TE----LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712
                K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G  S  +   
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441

Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            R  G    +F+V + G  + E   +++F  F        R+  G GLGLSI    + L 
Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 769 GGHVSISSSDEG 780
            G +S++S  + 
Sbjct: 502 EGEISVTSKPDA 513


>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
 gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
          Length = 1765

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 128/246 (52%), Gaps = 10/246 (4%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +L+  N+T   +   AL +  ++   A++ K+ F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1006 VVLSMANITSLKQLSVALKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQT 1065

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +L   ++KQ  Y++ I  +S  LL ++NDILD + ++AG + +      L+ LL ++   
Sbjct: 1066 EL---DAKQQNYIQKIDRASKSLLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDM 1122

Query: 658  IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
             + K  +  + +   ++       + D  RL Q+   +++NA+ F+ +G  ++    L+ 
Sbjct: 1123 FSVKASDKRLELLFAVAPNIPRHLLGDPLRLSQVLINLMNNAIKFTEQGEVLLSISQLER 1182

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              D+    FSV++NG  + E+    +F  F        R+  G GLGL+I +  + L GG
Sbjct: 1183 VEDDIVLRFSVRDNGIGLTEEQRNRLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGG 1242

Query: 771  HVSISS 776
             + + S
Sbjct: 1243 EIGVES 1248


>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
 gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
          Length = 1177

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 131/258 (50%), Gaps = 12/258 (4%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E  ++ L     ML    + D  RA+ +L   ++A   A + K++F+ ++S+E+R+P+  
Sbjct: 481 EARMVMLRQVGEMLALAILED--RAKASLKAAHDAAVDAAQAKSAFLANMSHEIRTPMNG 538

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G  +LLK +    ++ +Q   VE  S S+  LL ++N ILD + ++AG +++  +   
Sbjct: 539 VLGMLELLKDT---DMSREQWDLVETASNSAESLLEIINSILDFSKLEAGKVEIERTEFN 595

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L DL+ EV   +A + H+  + +       L   ++ D  R+ QI + +L N++ F+ +G
Sbjct: 596 LPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQILTNLLGNSVKFTERG 655

Query: 706 STVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
              +     +A     D  F +++ G  I  D+   +F  F        RR  G GLGLS
Sbjct: 656 EVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGLGLS 715

Query: 760 IVESFINLHGGHVSISSS 777
           I  + + L GG + + S+
Sbjct: 716 ICRNLVELMGGTIGLESA 733


>gi|294677043|ref|YP_003577658.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
 gi|294475863|gb|ADE85251.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
          Length = 892

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 10/242 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD V AE+ L +  +A    ++ +  FV  +S+E+R+PL  ++G  +LL+ +    L+
Sbjct: 340 DITDRVAAEKELIDARDAAMAGEQAQAEFVAVMSHEMRTPLNGLLGTLELLRETP---LD 396

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q+  +  +  +  ILL+ VN+ LD+  +DAG + L+        +L+E+ Q  A    
Sbjct: 397 ASQAALLGSMQKAGEILLSHVNNTLDVERLDAGKLSLSREPFAPMSVLDEIVQMQAAGAG 456

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI 720
               R++  + G+L   V  D  R+ Q+   ++ NA+ F+  G T+ L+A   RD G   
Sbjct: 457 ARGNRLETRAVGRLPDAVEGDAMRIRQVLLNLVGNAIKFTRDG-TITLEAEYHRDQGQLE 515

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           + V + G  IP+   + +F+ FV+      R   G GLGLSI    +    G + +  SD
Sbjct: 516 YRVIDTGIGIPQGETERIFDDFVTLDPELSREATGSGLGLSIARRLMRAMRGQIGV-ESD 574

Query: 779 EG 780
            G
Sbjct: 575 PG 576


>gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 703

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 134/272 (49%), Gaps = 25/272 (9%)

Query: 526 LEYSIIPLPNAQT----MLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            E ++ P+ N +T     + FV  ++T+  RAE  L    E    AD  K++F+  VS+E
Sbjct: 255 FESTVRPVQNMETGKVQEVVFVTRDITERKRAEEELHMAKERAEAADRAKSAFLATVSHE 314

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  IIG  DLL  +   +L  +Q+ Y   I   S +L +++NDILD + ++AG ++
Sbjct: 315 IRTPLHGIIGMIDLLLDT---ALTEEQASYGRTIGELSRLLSSIINDILDFSKMEAGRIE 371

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
           L      L  ++N+V   +  +  + N+ I    D ++  F+  D  RL Q+   +  NA
Sbjct: 372 LEVVDYELRAVVNDVVNLLRVRSEQKNLDITCDIDREVPPFLRGDPIRLRQVLINLGGNA 431

Query: 699 MDFSSKGSTVILKAARDN-----------GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + F+ KG  V L+ A D+             F+ F + + G  I +++   +F  F    
Sbjct: 432 VKFTEKGK-VALRIAMDSRAEQSDPVNEVARFLRFEICDTGIGITDEVAPRLFQPFSQAD 490

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGL+I +  + L GG +   S
Sbjct: 491 MSTARRYGGTGLGLAISKRLVELMGGEIGFRS 522


>gi|162449765|ref|YP_001612132.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161160347|emb|CAN91652.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1984

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 176/374 (47%), Gaps = 37/374 (9%)

Query: 439  TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            T+D  ++G+ V    GR    N  FR +W   E  L       +  A C     +S+   
Sbjct: 1604 TLDSTADGILVVDDAGRPVRHNRRFREMWGIPEQVL---LSQDDRLALCLDQLADSEQLL 1660

Query: 499  LFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNVTDSVRAE- 552
              A +  S DD R+ S   TL      V E    P   +  ++    +F +VT  V+AE 
Sbjct: 1661 QEARMTRSVDDPREASGIDTLTFDDGRVFERYSQPQRVSGRIVGRVWSFRDVTTRVQAEQ 1720

Query: 553  ---RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
               R L ++  A  +A+E    ++ F+   S+ELR+PLT++      L    +    S+ 
Sbjct: 1721 QRDRLLADEQRARARAEEAVRARDEFLSVASHELRTPLTSL-----QLAVHSMEKKLSRG 1775

Query: 607  SQYVEYISASSTI-------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            ++ +E   AS  +       L+ LV+ +LD++ + AG ++L+   I L  ++ EV   + 
Sbjct: 1776 AEGIERARASVDLSQRQTKRLVALVDMLLDVSRIHAGRLELDPIEIDLRAIVGEVTTYLD 1835

Query: 660  TKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++      + V + G + G +  D QRL Q+ + +LSNA+ F   G  + L  A D   
Sbjct: 1836 DQLARAGCALDVRAAGPVVGRW--DAQRLEQVVTNLLSNAIKFGG-GKPLELTIASDGET 1892

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               SV ++G  IP D+ + VF R+   VS+ H G   G+GLGL I  + +  HGG VS+S
Sbjct: 1893 ARLSVTDHGIGIPADVREQVFERYRRGVSSRHYG---GLGLGLYITRTIVEAHGGRVSVS 1949

Query: 776  SSDEGVTTINCRIP 789
            S     +T +  +P
Sbjct: 1950 SEIGEGSTFSVELP 1963


>gi|332142546|ref|YP_004428284.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552568|gb|AEA99286.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 784

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 13/247 (5%)

Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +A     KA   K  F+  +S+ELR+PL  I+G + +L+ ++L   + +Q  +
Sbjct: 267 RDMTERKQAENAAAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL---SDEQFSW 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I AS+  L N+ NDI+DL  +D   ++L+  TI L D   E+   I     +  + +
Sbjct: 324 VSTIYASAITLGNIFNDIIDLDKLDRDKLELSLKTISLKDFTEELSSIIRLLAADKQLEL 383

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVK 724
           K   +  L   V  D  RL QI   IL NA+ F+ KG   + + + + +GD     F ++
Sbjct: 384 KTSINEPLPRLVEIDGTRLRQILWNILFNAVKFTQKGHVSLSVSSTKPDGDKAYVTFVIE 443

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IPE     +F  +    H   +   G G+GL+I +  ++L  G + +SS +   T
Sbjct: 444 DTGVGIPESEIDKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMNGEIHVSSKEGKGT 503

Query: 783 TINCRIP 789
                +P
Sbjct: 504 RFEIVLP 510


>gi|329935905|ref|ZP_08285707.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329304596|gb|EGG48472.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 541

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA     E+L+ A+E +      +++ELR+PL N+ G+ + L+   +        + ++ 
Sbjct: 305 RAFNRMAESLQSAEERQRRLTGDIAHELRTPLANLRGYLEALRDGVV----DPSPELLDS 360

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK--QSIATKMHENNIRIK 670
           +   + +   +V+D+ DLA  +AG +  + + + L DLL   +   +   +     +R +
Sbjct: 361 LHEEAMLQQRIVDDLQDLALAEAGALTYHRAEVGLGDLLETARTAHAAQAEAAGVALRTR 420

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V    ++    AD  RL Q+   +L NA+  +  G TVIL A R     +  V + G+ I
Sbjct: 421 VPHPVRV---HADADRLRQVVGNLLGNALRATPPGGTVILSAERHGARAVLRVADTGTGI 477

Query: 731 PEDMCKSVFNRF-VSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSS 777
           P +    +F+RF  ++A RG Q  G GLGLSI    +  HGG V + S+
Sbjct: 478 PAEQLPHLFDRFWRADAARGRQTGGSGLGLSIARQIVADHGGTVEVEST 526


>gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 899

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 127/253 (50%), Gaps = 12/253 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + +  L +  E LR++   K+ F+ ++S+ELR+PL +I+  +++L  +    L+  + +Y
Sbjct: 485 KVQVELRQSAEQLRQSSNYKSEFLANMSHELRTPLNSILILSEMLAENHENHLSDDELEY 544

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S   LLNL+NDILDL+ V+AG M L +  + + ++   ++       ++  + +
Sbjct: 545 AKVIHDSGEDLLNLINDILDLSKVEAGKMDLWFREMDVYEIPQHIQNLFMPIANQKGLEL 604

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-------ILKAARDNGD--F 719
            V     L   F  D +R  Q+ + +LSNA+ F+ +GS         I  A R   D   
Sbjct: 605 SVDVANDLAEIFHTDVKRFHQVLNNLLSNALKFTEEGSVTVKVDRARITPAMRQLSDTWI 664

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  IP++    VF  F        R+  G GLGLSI      L GG +++SS+
Sbjct: 665 TVSVTDTGIGIPKNKQNIVFESFQQADGATVRKYGGTGLGLSICREVTKLLGGWITLSST 724

Query: 778 DEGVTTINCRIPS 790
           +   +T    +PS
Sbjct: 725 EGQGSTFTVYLPS 737


>gi|258620901|ref|ZP_05715935.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM573]
 gi|258586289|gb|EEW11004.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM573]
          Length = 785

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725
            +     L S V  D  RL Q+   ++SNAM F+ +G  V+  +A       D    V++
Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQYADITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE+  + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEEEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
 gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
          Length = 1111

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 7/239 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ I 
Sbjct: 429 IQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIII 488

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVI 672
            S   L NLV+D+LD   +  G M +  S + L      V +  +  +    IRI  +V 
Sbjct: 489 KSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQVP 548

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D K+ S  AD QRL Q+   ++ NA+ ++S+G  VI     D+   +  V + G  IP 
Sbjct: 549 ADLKVVS--ADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDHVRV-QVVDTGQGIPA 605

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 606 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 664


>gi|260173810|ref|ZP_05760222.1| putative two-component regulator sensor kinase [Bacteroides sp. D2]
 gi|315922073|ref|ZP_07918313.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695948|gb|EFS32783.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 754

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 10/259 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +T    +N+ D    E  L E    L +  E+K SF+ ++S+E+R+PL +I+GF ++L  
Sbjct: 501 KTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILAL 559

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G  + ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++    + +L++++  
Sbjct: 560 ED-GLSSVEREEYIGTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYM 618

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD 715
           +    +      +K + +  L     DR+RL+Q+ +  L+NA  F+  G   +      D
Sbjct: 619 THQVLIAPRLEFLKEVDNIPL-EINVDRERLIQVLTNFLNNASKFTETGYIKLGYIYLPD 677

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            G     V++ G  IP +  + +F+RF       Q  G GLGLSI +  I   GG + + 
Sbjct: 678 EGRVRIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQVIIEKLGGRIELK 735

Query: 776 S----SDEGVTTINCRIPS 790
           S           + CR+ S
Sbjct: 736 SEVGKGSRFTVVLPCRVVS 754


>gi|229010880|ref|ZP_04168077.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
 gi|228750554|gb|EEM00383.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
          Length = 591

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 177/355 (49%), Gaps = 35/355 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV     +G + + NP    F  +W+ E+        +  I    S         +L
Sbjct: 264 MADGVVTLNQEGEVVVINPPAEHFLQVWQEEK-------EVELIKKLPSELV------EL 310

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++ S  ++++ ++  L+  +  VL   + PL N QT      +  +V   R +TE+ 
Sbjct: 311 FHLVVES--EQQQVVEINLQKGNYVVL---MTPLYN-QT-----KIRGAVAVLRDMTEE- 358

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ ++++  F+ +VS+ELR+P+  + G+++ +    +     + +++V+ I   S  
Sbjct: 359 ---RRLEKMRQDFIANVSHELRTPMVMLQGYSEAI-LDDIVQTKEEINEFVQIIYDESVR 414

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +++ V     +  
Sbjct: 415 LGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQSPIEQ 474

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  D  R+ Q+ + ++ NA+  ++ G  V L     N    F V+++G+ IPE+    +F
Sbjct: 475 YTFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDIPFLF 534

Query: 740 NRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +RF        RG++ G GLGL+I ++ +  H G +S+SS     TT +  +P++
Sbjct: 535 DRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSVYLPNR 589


>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
 gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
          Length = 1670

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 124/240 (51%), Gaps = 10/240 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            NVT+  R E+ L     A   A   K+ F+ ++S+E+R+P+ +IIGF  L++++    L+
Sbjct: 916  NVTERRRVEQELNRARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQSA---DLD 972

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            S Q +Y+  + +S+  LL+++ DILD + ++AG   L      L+ +L ++   ++ K  
Sbjct: 973  SAQREYLNKMMSSADSLLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNMVSVKAE 1032

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GD 718
               I   +     +  F+  D  RL Q+ + +++NA+ F+ +G   ++    +N      
Sbjct: 1033 SKGIDFILSVGPDVPLFLRGDPLRLEQVLTNLVNNAVKFTDRGEVNLIVTCEENCTGEAS 1092

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              F V+++G  +  +    +FN F        R+  G GLGL+I  S + L GG VS+ S
Sbjct: 1093 IKFIVRDSGIGLSSEEVSVLFNSFTQADASTTRKYGGTGLGLAIARSLVELMGGTVSVES 1152


>gi|251796378|ref|YP_003011109.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544004|gb|ACT01023.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 486

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 175/400 (43%), Gaps = 64/400 (16%)

Query: 424 DLETKYNTLVKVQGETID-------HLS-------EGVAVFGPDGRIKLSNPAFRSL--- 466
           DL   +N + +  G  ID       HLS       + V  F  DGR+ L+NP    L   
Sbjct: 112 DLAKTFNHMTEQLGTLIDDLNHEKEHLSSILRSMGDAVITFDADGRVILTNPPGHMLVSR 171

Query: 467 ---------WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
                    W+ EE   +P  H  ++              D F  ++ S  D    +Q  
Sbjct: 172 WSDLEMDIDWEEEE---APPFH--DVPGPLR---------DTFQRVMHSGRDCTNKVQ-- 215

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              + ++V    + PL N         V  +V   R +TE++    K ++++  FV +VS
Sbjct: 216 ---VINNVWSVVMAPLQNEGV------VRGAVAVIRNVTEEH----KLEKLRRDFVANVS 262

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL+ + G+++ L    + S   ++ + V+ I   S  +  LVND LD+A ++AG 
Sbjct: 263 HEIRTPLSMLQGYSEALLDDIVASPEERK-ELVQVIYDESLRMGRLVNDFLDMARMEAGH 321

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILS 696
           ++L+     L +++  V +       E N+ +   + D  L    AD  R+ Q+ + ++ 
Sbjct: 322 VELSLQEFDLRNVIRRVHRKFQVYAKERNVSLNADLPDTPLAVHEADEDRIEQVLTNLMD 381

Query: 697 NAMDFSSKGSTVILK---AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV---SNAHRG 749
           NA+  +  G ++ +    A  +N  F+   V + G  IP +    +F RF        RG
Sbjct: 382 NALRHTPAGKSIKIAGQTATINNLKFVKLIVADEGQGIPSEDVPYIFERFYKADKARKRG 441

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              G GLGL+IV++ I  H G + + S     TT    +P
Sbjct: 442 ASGGTGLGLAIVKNIITQHNGRIEVDSVLGKGTTFTLLLP 481


>gi|168703825|ref|ZP_02736102.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 536

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 18/230 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EALR+AD  K+ F+  +++ELR+PL  +     L++  +       + + +  +      
Sbjct: 162 EALREADRRKDEFLATLAHELRNPLAPMRNGVHLMRVGQ--PDGPARERTLAMMERQLGQ 219

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS----IATKMHENNIRIK---VI 672
           +++LV+D+LD+A   +G + L    + L  +L    ++    I    HE  + +    ++
Sbjct: 220 MVHLVDDLLDVARFSSGKIVLRKERLELAPVLGTAVETSRPLIEVGRHELTVDVPAEPLL 279

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            DG       DR RL QIF+ +L+NA  ++ KG  + L AAR+    +  V +NG  I  
Sbjct: 280 LDG-------DRTRLTQIFANLLNNAAKYTPKGGRITLSAAREGEKAVVRVGDNGIGISA 332

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +M   VF+ F  V +A    + G+G+GL++V+  + LHGG ++  S+ EG
Sbjct: 333 EMLPQVFDLFTQVGSAVDRAQGGLGIGLTLVKRLVALHGGEIAAHSAGEG 382


>gi|17646113|gb|AAL40901.1|AF145972_1 ethylene receptor [Petunia x hybrida]
          Length = 738

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 133/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  +I  + LL+ ++L
Sbjct: 313 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHALIALSSLLQETEL 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  EV   I 
Sbjct: 373 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVLNLIK 429

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
                  + + +     L  F + D +R++Q+   ++ NA+ FS +GS  +   A     
Sbjct: 430 PIASVKKLFVTLSLSSDLPEFAIGDEKRIMQVLLNVIGNAVKFSKEGSVSVSAVAAKSES 489

Query: 714 -RDNGDFIF-------------SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD     F              VK+ GS I P+D+ K +FN+F  N     +   G GL
Sbjct: 490 LRDPRAPEFFPVQSENHFYLRVQVKDTGSGISPQDIPK-LFNKFAQNQALATKNSGGSGL 548

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 549 GLAICKRFVNLMEGHIWIESEGLG 572


>gi|60682012|ref|YP_212156.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60493446|emb|CAH08232.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 812

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%)

Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           PN +  L  VN   +V+ E     RA  +K E   +++ +K++F+ ++S+E+R+PL  I+
Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLL T       ++Q ++   I  ++T+LL L +DI+DL+ +DAG  +     + L 
Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYTPKPVCLY 665

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
                + Q +  K+ E  + +++  D  L + F AD   L Q+ +  +SNA+ F+ +G+ 
Sbjct: 666 QFCAMMVQKMRNKVSE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRGTI 724

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            +             V++ G  I  +  ++VF+RF+      Q  G GLGL + +S I  
Sbjct: 725 TVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782

Query: 768 HGGHVSISS 776
            GGH+ + S
Sbjct: 783 MGGHIGVIS 791


>gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 512

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 8/235 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L + ++I+  FV +VS+ELR+P+T+I GF++ L     G+ N +Q    ++  I   S  
Sbjct: 282 LVRLEQIRKDFVANVSHELRTPITSIKGFSETLLD---GAFNDEQMLLSFLTIIHDESNR 338

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVND+L+L+ ++     L+     L D+L  V    + ++   N++  V  +     
Sbjct: 339 IQVLVNDLLELSKIERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQFDVEIEQD-AV 397

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL+QIF+ +++NA+ +S + +TV L+ + ++   IF VK+ G  I +     +F
Sbjct: 398 ILGDVNRLMQIFTNLINNAIAYSKEETTVTLRISANDQYGIFEVKDEGIGIEKAEISRIF 457

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  V  A      G GLGLSIV+  I  H G + + S     T+I   +P K+
Sbjct: 458 ERFYRVDRARSRNSGGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKVYLPLKD 512


>gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402]
          Length = 676

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 164/362 (45%), Gaps = 33/362 (9%)

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWDLFAAIIT 505
           +F PD       P F   W  E  RL P   I+N       Y       + +   +A I 
Sbjct: 26  IFSPD-----YVPLF---WSPEAERLLPDYLIKNTKIRLQDYLKTVLLEEDYIRLSAFIK 77

Query: 506 SFDDERKSLQGTLEL---LSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           S + +  + +   +    LSD + L++S     +    +T  ++T     ER L    + 
Sbjct: 78  S-NPKTAAFEAKFDKPSSLSDKTALKFSFTQQDDNNFFVTIDDITKQKLKERFLIIARQD 136

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             KA+ +++ F+ +VS+E+R+P+  IIG  +L+  +   +L+ +QS+Y   ++ S+ +LL
Sbjct: 137 AEKANSMRSLFLANVSHEIRTPIQTIIGMMELINET---NLDEEQSEYTRQVNFSAEVLL 193

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LD + +++G M +  +   L D + +    I+ + H+  + I V    K+  F+
Sbjct: 194 TLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPDFI 253

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGD---------FIFSVKNNGSS 729
             D  RL Q+    + NA+ F+  G  S  +     +N D          +F V + G  
Sbjct: 254 YGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDPYAAKHFFILFEVADTGIG 313

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +    +FN F        R+  G GLGL+I ++ I +  G + I  +    +    +
Sbjct: 314 VNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNISRGSVFWFK 373

Query: 788 IP 789
           IP
Sbjct: 374 IP 375


>gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 589

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 118/219 (53%), Gaps = 7/219 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K ++++  FV +VS+EL++P+T+I GF++ L     G++N K +   ++  I   S  
Sbjct: 354 LKKLEQMRKDFVANVSHELKTPITSIKGFSETLLD---GAMNDKDTLEYFLSIILKESDR 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+ D+LDL+ ++    +LN   + +N+LL E+   +  K  E  I + +    K   
Sbjct: 411 LQSLIEDLLDLSKIEKQGFRLNPQYLEINELLEEIFVILEGKAREKEIDLVLSKPKKELY 470

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  R+ Q+F  +++NA+ ++  G  V +K    + + +  V + G  + +D    +F
Sbjct: 471 LFADASRIKQVFINLINNAIAYTPAGGEVKVKVEEVDKEVVIVVSDTGIGMEQDEIPRIF 530

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  V  A      G GLGL+IV+  +  H G +S++S
Sbjct: 531 ERFYRVDKARSRNSGGTGLGLAIVKHIVEAHHGSISVTS 569


>gi|220917574|ref|YP_002492878.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955428|gb|ACL65812.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 417

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 8/234 (3%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +V  ER   E+   L + D +K++F+ ++++EL +PLT + G+  +L++ KLG L  +Q 
Sbjct: 146 AVAGERRAAER---LIEVDRLKSAFMHNLAHELSTPLTPLAGYLRILQSDKLGPLQPQQR 202

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + VE +  S   L  +V+++ D A++ AG   +    +V +   ++V       + +  +
Sbjct: 203 RIVEAMLGSVARLSRIVDNLSDFASLQAGRAPIVEQPVVPDQFADDVVAEHRPAIRDARL 262

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V   G  G+ +AD ++L Q  S I+SNA+ FS  G  V+++  R+ G   F+V + G
Sbjct: 263 HVAVSHAGG-GAVLADARKLRQALSNIVSNAVKFSPHGGEVLVEVGREPGRLRFTVYDQG 321

Query: 728 SSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I     + VF              +  G GLGL +       HGG V + S 
Sbjct: 322 PGIGAAELEQVFEPLHHAAARAGEEARLPGSGLGLPVARRIAEAHGGRVWVESP 375


>gi|153005523|ref|YP_001379848.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029096|gb|ABS26864.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 979

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 136/316 (43%), Gaps = 37/316 (11%)

Query: 507 FDDERKSLQGT--LELL------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---- 554
           FD+ R    G   LEL       ++   E S+ PL  A  +L    + D    +RA    
Sbjct: 198 FDEPRPRPMGAGGLELYGLRKDGTEFPAEISLSPLETADGLLAITAIRDVAERKRAEEDR 257

Query: 555 ----------LTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                     L E   A  K+   + +K  F  +VS+ELR+PL  I+G  D L  S    
Sbjct: 258 ARLHAQLQATLEELGAAYDKSQQLERLKTQFFANVSHELRTPLALILGPADELLAS---D 314

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L     + VE I+ ++  L   VND+LD+A ++AG M L  S + +  L+  V       
Sbjct: 315 LPPGPRRDVEVIARNARTLAKHVNDLLDVAKLEAGKMALELSDVDVAQLVRLVAAHFDAL 374

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARD 715
                +   V +   L + V D  +L ++   +LSNA  F+ +   V        + A  
Sbjct: 375 AASREMAYSVEAPATLAARV-DPDKLQRVVFNLLSNAFKFTPEAGKVRCTLRVEPEGAGS 433

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             D    V ++G  +P    ++VF RF        RR  G GLGL+I   F+ LHGG ++
Sbjct: 434 APDLAIEVADSGPGVPPAERETVFARFTRGDDDTARRVGGTGLGLAITRDFVELHGGRIA 493

Query: 774 ISSSDEGVTTINCRIP 789
           +  + EG    +  +P
Sbjct: 494 LGEAPEGGAIFSVHLP 509



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 16/243 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K EA R A  +K +F++ VS+ELR+PLT +      L       L   Q + V   S ++
Sbjct: 714 KEEAER-ASAVKTNFLRLVSHELRTPLTTLHLQLQRLTRDTEHPLEPHQREIVRRGSFAA 772

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           T L  LV  +L  A + +G + +    + L  L+ +V +       +  + +++ +   +
Sbjct: 773 TRLTGLVEALLHEAQLASGRLSVAVEDVDLGALVAKVVEEHRPLADDKGLALRLRARDHV 832

Query: 678 GSFVADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735
             +V    R L+ I S ++ NA+ F++ G  V+       GD +   V+++G  I  +  
Sbjct: 833 -PWVETEPRFLKLILSNLVGNAVKFTAAG--VVEVGVEGRGDELRVEVRDSGPGIAAEDR 889

Query: 736 KSVFNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             VF  F     RG R       G+GLGL++V       G  V +SSS    +T    +P
Sbjct: 890 ARVFEPF----ERGVRVAEQFVPGLGLGLAVVRDLAAAIGATVELSSSSSAGSTFTVTLP 945

Query: 790 SKE 792
            ++
Sbjct: 946 RRQ 948


>gi|86141300|ref|ZP_01059846.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831859|gb|EAQ50314.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 906

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 18/239 (7%)

Query: 553 RALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R +T++N+ LR      +A E K++F+ ++S+E+R+PL  I+G ++LL  +    L+ K+
Sbjct: 371 RDITQRNDTLRAKASAERAAEAKSTFLSNMSHEIRTPLNVILGLSELLIKN---GLDDKK 427

Query: 607 --SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              + +E IS S+  LL++V+DILD + ++AG + L      L ++L+ +  +   K  E
Sbjct: 428 LLEKNLEGISFSAKNLLSIVDDILDFSKIEAGKLSLQALDFNLKEVLSNLTSTFEIKARE 487

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI-- 720
             +++    D ++    V D+ RL QI + ++ NA+ F+ +G  T+ L+   +  D +  
Sbjct: 488 KGLQLITTIDERIPDIIVGDQYRLNQIITNLIGNAIKFTKQGKITLELQLIEETTDKVTI 547

Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F V + G  IP++    +F  F  V      +  G GLGLSI    INL GG + + S
Sbjct: 548 NFIVTDTGIGIPKNQLPHIFKSFYQVDEPEHAKINGTGLGLSITHELINLQGGSLFVES 606


>gi|318040458|ref|ZP_07972414.1| two-component system sensor histidine kinase [Synechococcus sp.
           CB0101]
          Length = 493

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 120/228 (52%), Gaps = 2/228 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +A E + +FV  VS+ELR+P+T I G++  L   +   ++ +Q + +E +++ +  + 
Sbjct: 245 LAEAWEHQRTFVNGVSHELRTPITLISGYSRRL-LRRAAEVSPEQREQLELVASEAESMG 303

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+L++A  DAG ++L    +  +DLL  + + +        +R+      +     
Sbjct: 304 RLVNDLLEIARDDAGRLQLQCQPLDPSDLLVSLFERL-QPTSAGRLRLHPADLAQPLEVN 362

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +RL Q  + ++ NA+ +S     V L  + D  + +  V+++G+ +PE   + +F R
Sbjct: 363 ADPERLSQCLTNLVENALKYSPAPQPVELVLSLDGAELVLHVRDHGAGVPEAERERIFGR 422

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FV  +   +  G G+GL++V++ +   GG   ++ +  G      R+P
Sbjct: 423 FVRGSSSAEISGHGIGLAVVQTLMERMGGRALVADATGGGADFQLRLP 470


>gi|283781401|ref|YP_003372156.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283439854|gb|ADB18296.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 501

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNS-FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +KA + +N+ FV  VS+E+++PL++I  + +LL   +    ++ + ++++ I + +  L 
Sbjct: 266 QKAIQKRNAEFVSAVSHEMKTPLSSIRAYVELLADDE-AEDDATREEFLKVIESQTDRLQ 324

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            L++++L+LA ++AG++ +      LN+LL E    +     + NI +   +S   LG  
Sbjct: 325 RLIDNLLNLARIEAGVVAVQKLPQSLNELLGEAVNLLQPAAQQKNITLSSELSPMYLG-V 383

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +ADR  LLQ    ++SNA+ ++  G +V +++     D +F V ++G  + ED CK VF 
Sbjct: 384 LADRDTLLQAAINLISNALKYTQPGGSVQVRSRLAASDVVFEVTDSGVGLSEDDCKRVFE 443

Query: 741 RFVS-NAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIPS 790
           +F      R    G GLGL +V+  + ++H G V + S     +T    +PS
Sbjct: 444 KFYRVKKDREMASGTGLGLPLVKHIVEDIHNGRVEVESKLGEGSTFRLVLPS 495


>gi|257487150|ref|ZP_05641191.1| PAS [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331009229|gb|EGH89285.1| PAS protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1185

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 11/255 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +V++T+  R E+ L E      +A+E K+ F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 669 WVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRK 728

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++  SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L   V +  + +
Sbjct: 729 GHTP-SQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             E ++ +++  S+   G +  D  RL Q+   +L NA+ F+ +GS V+   A D+   +
Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLRVVALDDSSRL 847

Query: 721 -FSVKNNGSSI-PEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +++++G  I PE   +       ++    AH G   G GLGLSI    + L  G +S+
Sbjct: 848 RIAIQDSGEGIEPERQQQIFQPFIQASDDTAAHYG---GSGLGLSITRQLVELMKGDISL 904

Query: 775 SSSDEGVTTINCRIP 789
            SS    T +N  +P
Sbjct: 905 HSSPGEGTLVNIDLP 919


>gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
 gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
          Length = 676

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 164/362 (45%), Gaps = 33/362 (9%)

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWDLFAAIIT 505
           +F PD       P F   W  E  RL P   I+N       Y       + +   +A I 
Sbjct: 26  IFSPD-----YVPLF---WSPEAERLLPDYLIKNTKIRLQDYLKTVLLEEDYIRLSAFIK 77

Query: 506 SFDDERKSLQGTLEL---LSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           S + +  + +   +    LSD + L++S     +    +T  ++T     ER L    + 
Sbjct: 78  S-NPKTAAFEAKFDKPSSLSDKTALKFSFTQQDDNNFFVTIDDITKQKLKERFLIIARQD 136

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             KA+ +++ F+ +VS+E+R+P+  IIG  +L+  +   +L+ +QS+Y   ++ S+ +LL
Sbjct: 137 AEKANSMRSLFLANVSHEIRTPIQTIIGMMELINET---NLDEEQSEYTRQVNFSAEVLL 193

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LD + +++G M +  +   L D + +    I+ + H+  + I V    K+  F+
Sbjct: 194 TLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPDFI 253

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGD---------FIFSVKNNGSS 729
             D  RL Q+    + NA+ F+  G  S  +     +N D          +F V + G  
Sbjct: 254 YGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDPYAAKHFFILFEVADTGIG 313

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +    +FN F        R+  G GLGL+I ++ I +  G + I  +    +    +
Sbjct: 314 VNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIPRGSVFWFK 373

Query: 788 IP 789
           IP
Sbjct: 374 IP 375


>gi|320160070|ref|YP_004173294.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
 gi|319993923|dbj|BAJ62694.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
          Length = 2319

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 124/224 (55%), Gaps = 16/224 (7%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            + D +K+ FV +VS+ELR+P+T+I G+ +++     G L  +Q  ++E +  ++  L  L
Sbjct: 2083 QVDRMKSEFVANVSHELRTPMTSIKGYVEIMLLGATGELTPQQRHFLEIVKNNTERLGVL 2142

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN----NIRIKVISDGKLGS 679
            VND+LDL+ +++G + LN + + L  L  EV + ++ +  E     N  ++V  +  L +
Sbjct: 2143 VNDLLDLSRIESGKITLNMTDLNLRLLAEEVMEYVSRRSQEEEKPMNFSLEV--EENLPT 2200

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
               D +R+ Q+ + ++ N  +++ +   V ++  R++G+    V+++G  I  +  + +F
Sbjct: 2201 VRGDEERIRQVITNLVVNGYNYTPENGHVWVRIFRNDGEVQVDVQDDGIGISIEDQERIF 2260

Query: 740  NRFVSNAHRGQ------RRGVGLGLSIVESFINLHGGHVSISSS 777
             RF    +RG+        G GLGL++ ++ + +H G +   SS
Sbjct: 2261 ERF----YRGEDPLVLKTAGTGLGLAVAKTIVTMHNGRIWFKSS 2300


>gi|307822230|ref|ZP_07652462.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307736796|gb|EFO07641.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1268

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 165/358 (46%), Gaps = 50/358 (13%)

Query: 446  GVAVFGPDGRIKLSNPAFRSL--WKTEE------NRLSP------GTHIRNIAATCSRYY 491
             + +  P+GR+   N   + +  +  EE      +R  P      GT  R++    +R  
Sbjct: 759  AIVMLDPEGRVVSWNSGAQRIKGYSAEEIVGQHFSRFYPLEDIERGTPQRDLDIVTARGR 818

Query: 492  NESDGWDL------FAA--IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             E +GW +      F A  + T+  D+  +L+G  +L  D                    
Sbjct: 819  FEDEGWRVRKNGSTFWANVVYTAIRDQSGNLRGYAKLTRD-------------------- 858

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
             +T+  R ++ L        KA+  K+ F+  +S+ELR+PL  I+GF  LL+       +
Sbjct: 859  -LTERKRLDQELERAKSVAEKANLAKSDFLSSMSHELRTPLNAILGFAQLLEAGSPPPTD 917

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +++ +  + I A    LL L+N+ILDLA +++G + L+   + L D++ E +  I  +  
Sbjct: 918  AQKIRLHQIIKAG-WYLLELINEILDLALIESGKLSLSREPVALIDVIIECQAMIEPQAQ 976

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
            + +I++  I   +     ADR R+ Q+   +LSNA+ ++ +  TV +K      + +  S
Sbjct: 977  QRDIKLTFIPFDETWFASADRTRVKQVLINLLSNAIKYNREHGTVEVKCIESTPERLRIS 1036

Query: 723  VKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            VK+ G  + PE + +    FNR         + G G+GL + +  + L GG + + S+
Sbjct: 1037 VKDTGEGLAPEKLAQLFQPFNRL--GQESSGKEGTGIGLVVTKQLVELMGGAIGVEST 1092


>gi|303326243|ref|ZP_07356686.1| sensor histidine kinase with PAS/PAC and response regulator receiver
            domains [Desulfovibrio sp. 3_1_syn3]
 gi|302864159|gb|EFL87090.1| sensor histidine kinase with PAS/PAC and response regulator receiver
            domains [Desulfovibrio sp. 3_1_syn3]
          Length = 1228

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 11/238 (4%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-- 607
            R +  L E      +A+E K+SF+  +S+E+R+P+  IIG  ++ +  KL + +      
Sbjct: 828  RIQTELQEACATANRANEAKSSFLARMSHEIRTPMNAIIGMANIAR-KKLHARSPTDELL 886

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
                 I  SS  LL L+NDILD++ ++AG ++L+  +  L+ L+N V+  I  +  E NI
Sbjct: 887  NCANQIEVSSHHLLGLLNDILDISKIEAGKIELSEDSFALSKLVNSVESIIRPRCMEKNI 946

Query: 668  RIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFI--F 721
               V  +G       AD  RL Q+   +L NA  F+ +   ++ +     R  G+ +  F
Sbjct: 947  AFNVAVEGIATAHLKADSLRLRQVLINLLGNAAKFTPELGEILFRVRQEDRRRGERLISF 1006

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             V++NG  I E+  K++F  F   +    R   G GLGLSI +S I   GG ++++S+
Sbjct: 1007 LVQDNGVGIAEETLKTLFEPFEQGSTHIARAYGGTGLGLSISKSIIKHMGGDIAVTST 1064


>gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 709

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 11/252 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LP  Q +   ++VT   + ER L E  E   +AD  K+ F+ ++S+E+R+P+  +I  + 
Sbjct: 64  LPK-QVVGVILDVTKRKKVERDLIEAKEQAEQADRAKSRFLANMSHEIRTPMNAVINLSR 122

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+   +L    S+Q  YV  +  S   LL ++NDILD + ++AG ++L      L +L++
Sbjct: 123 LVLQDEL---TSRQRDYVGKVLRSGENLLAIINDILDFSKIEAGKLELESVPFGLRELID 179

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--- 708
           +V   ++   H+  I  +V +++      V D  RL QI   ++SNA+ F+ +G  +   
Sbjct: 180 DVVVPLSPTAHDKAIGFRVELAEELPERLVGDATRLRQILLNLVSNAIKFTEQGEVLLKV 239

Query: 709 -ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +LK   D     F V ++G  I     + +   F        RR  G GLGL+I +  +
Sbjct: 240 QLLKRQGDQVTIAFKVSDSGIGISPAQQQRLGESFRQADDSINRRFGGTGLGLAITKQLL 299

Query: 766 NLHGGHVSISSS 777
            L G  + + S+
Sbjct: 300 GLMGSELEVESA 311


>gi|328873791|gb|EGG22157.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1072

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E+  +A+++K+ F+ ++S+ELR+P   I+G T ++  SK   L   Q    E I  S
Sbjct: 682 QAEESAIQANKLKSQFIANISHELRTPCHGILGMTQIILDSK--ELTPSQRDNAETIKKS 739

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L++L++DILD + +++G M L++S+  L  ++ +V    +   +   I +  I   +
Sbjct: 740 TDNLVSLIDDILDFSKIESGKMTLDFSSFELVSMVEQVLHEHSKLSNAKAIDLVFIMGRE 799

Query: 677 L---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSS 729
                    DR+R+ QI S ++SNA+ F+  G  +I +    ++GD I   FSV++ G  
Sbjct: 800 YPVPPVLFGDRKRIKQILSNLVSNAVKFTEAGHVLIEISTEYESGDQISLKFSVQDTGIG 859

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           IP +    +F  F+       R+  G GLGLSIV+  ++L GG +S  S
Sbjct: 860 IPHENASQLFVPFIQLDGSSSRKHGGSGLGLSIVKELVDLMGGTLSFES 908


>gi|294645005|ref|ZP_06722736.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806981|ref|ZP_06765803.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292639654|gb|EFF57941.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445816|gb|EFG14461.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 862

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G  + + +Q++
Sbjct: 622 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEITQFI 680

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 681 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 740

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727
            + +        D  RL Q+ + +++NA  F+S G   I     D+   G     V++ G
Sbjct: 741 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 798

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I E+  + +F RF    +  Q  G GLGLSI ++ I    G +S++S     T    R
Sbjct: 799 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 856

Query: 788 IPS 790
           +P+
Sbjct: 857 LPN 859


>gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae NTUH-K2044]
 gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 946

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    
Sbjct: 440 VLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 496

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +   
Sbjct: 497 ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLP 556

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  V+    +  GD+
Sbjct: 557 LVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCAGDY 614

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           +  SV++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +++ +
Sbjct: 615 LQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVET 674

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 675 EPGMGSRFTIRIP 687


>gi|239624048|ref|ZP_04667079.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522079|gb|EEQ61945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 876

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 134/275 (48%), Gaps = 13/275 (4%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y    L   Q +  F + T+ VR+ +AL E   +  +A+  K+ F+  +S+E+R+PL  I
Sbjct: 319 YRADDLNTPQLITVFSDRTEEVRSRQALQEAMMSAERANMAKSEFLSRMSHEIRTPLNAI 378

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T +   S   +  +K    +  I+ SS  LL L+ND+LD++ +++  M L      +
Sbjct: 379 IGLTTIAAASIRDT--AKAEDCLAKITFSSKHLLMLINDVLDMSKIESSKMVLQDEPFDI 436

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSK 704
            +L+N    ++  +  E  I  +   +G  G    F+ D  RL QI   + SNA+ F++ 
Sbjct: 437 FELVNGFVSTVYAQAKEKGIEFRETMEG-FGEDTVFIGDSLRLNQILLNLSSNAVKFTAP 495

Query: 705 GSTVILKAARD-NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           G  + L+ +R  NG+      F + + G  + +D  + +F  F        +R  G GLG
Sbjct: 496 GGCIRLEVSRHRNGNAADVLRFILSDTGIGMTKDAMERIFQPFEQADATISKRYGGTGLG 555

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +SI  + I L GG + I S     TT    IP K+
Sbjct: 556 MSITRNLITLMGGQIQIESESGVGTTCIVDIPFKK 590


>gi|159905754|ref|YP_001549416.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887247|gb|ABX02184.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 639

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 139/256 (54%), Gaps = 8/256 (3%)

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M T +N++D      AE      NE L++ D +K+  +  VS+ELR+PLT+I G+ +L+ 
Sbjct: 381 MATQINISDEKLKKHAEELKASYNE-LKELDNLKSELIAIVSHELRTPLTSIKGYVELVL 439

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +G++N  Q + ++    +   L  L+  +LDL+ ++ G +++    + L  ++ +V 
Sbjct: 440 DGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVI 499

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +     E NI++K   + +  +  AD+ R+ Q+ + ++ NA+ FS    ++++ A  +
Sbjct: 500 EYLQPIATEKNIKLK--KEIEEIAIDADKDRITQVLTNLIENAIKFSPANESIMISADLE 557

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +      V ++G+ IP+   + VFNRF  V ++ + ++ G GLGL++ +S +  H G + 
Sbjct: 558 DEHVHLRVTDHGAGIPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIW 617

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +T +  +P
Sbjct: 618 VESELGKGSTFHIILP 633


>gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
 gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
          Length = 1053

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 12/252 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
           Q  +   +VT    AE+ L E      +A E+K+ F+ ++S+E+R+P+  IIG + L LK
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T     L  KQ  YV  I +S+T+LL ++NDILD + ++AG + + +    L ++L+ V 
Sbjct: 326 TE----LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712
                K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G  S  +   
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441

Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            R  G    +F+V + G  + E   +++F  F        R+  G GLGLSI    + L 
Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 769 GGHVSISSSDEG 780
            G +S++S  + 
Sbjct: 502 EGEISVTSKPDA 513


>gi|170737057|ref|YP_001778317.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169819245|gb|ACA93827.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1120

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 126/249 (50%), Gaps = 7/249 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++  V++      ER L E     +     K  F+  +S+E+R+PL   +G  +LL  S+
Sbjct: 506 VIGMVDLAKRKEIERRLRESRARAQAESHEKGMFLATMSHEIRTPLHGALGNLELL--SR 563

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +G L  +Q   +     S   LL+L+N +LDL+ ++AG   L      ++ L+ +  ++ 
Sbjct: 564 MG-LTQEQRSRLLIAQDSFGSLLSLINGVLDLSRIEAGEFLLQEQPQHIDQLVEQASRTF 622

Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A    +N +R+  + D  L G+++ D  R  QI + ++ NA+ F+S G+  +   + + G
Sbjct: 623 AADAQKNGVRLLCLIDPALRGTWICDGYRFTQIVTNLIGNAVKFTSHGAITVSLGSTEIG 682

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                V ++G  IPED  + +F  +V  S   +  R G GLGLS+ +      GG ++ +
Sbjct: 683 QVRLRVADSGRGIPEDEIEKIFMPYVQGSAGPKSSRAGTGLGLSLCQKIAERMGGSIT-A 741

Query: 776 SSDEGVTTI 784
            S+ GV +I
Sbjct: 742 ESEVGVGSI 750


>gi|153869805|ref|ZP_01999330.1| sensor histidine kinase FexB [Beggiatoa sp. PS]
 gi|152073733|gb|EDN70674.1| sensor histidine kinase FexB [Beggiatoa sp. PS]
          Length = 681

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 134/278 (48%), Gaps = 29/278 (10%)

Query: 526 LEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L+ + IPL N Q  +     +F ++T+  +AE  L +  +    A+  K+ F+ ++S+EL
Sbjct: 291 LDTNKIPLHNVQGQVIGILGSFEDITERKQAEVQLQKALQTAETANHTKSVFLANMSHEL 350

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  ++G+T + +     +LN +Q + ++ I  +   LL L+NDILD++ V+AG ++ 
Sbjct: 351 RTPLNAVLGYTQIFQQD--DTLNKQQREGIDIIHRNGEYLLTLINDILDISKVEAGQLEF 408

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
               + L+  L  + Q    +  +  I         L   + AD +RL QIF  +LSNA+
Sbjct: 409 YPKDMKLSQFLQGIVQLFQMRTQQKKIEFSYKPLSALPEIIHADEKRLRQIFINLLSNAI 468

Query: 700 DFSSKGS---TVILKAARDNGD----------------FIFSVKNNGSSIPEDMCKSVFN 740
            F+ KGS   TV  + A+   +                  F +++ G  I       +F 
Sbjct: 469 KFTDKGSVTFTVKTEQAKIKNEPSWVKNTLSTFYSYSRLHFQIEDTGIGIASHELDKIFL 528

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F      H  +  G GLGLSI ++ +++  G + + S
Sbjct: 529 PFQQADKNHYNKPMGTGLGLSITKNLVDMMDGSIHVES 566


>gi|325957609|ref|YP_004293021.1| Sensor protein [Lactobacillus acidophilus 30SC]
 gi|325334174|gb|ADZ08082.1| Sensor protein [Lactobacillus acidophilus 30SC]
 gi|327184254|gb|AEA32701.1| Sensor protein [Lactobacillus amylovorus GRL 1118]
          Length = 384

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++ K+  + +VS+++R+PLT+IIG+  LLK+         Q +Y+      +  + +
Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVTSP--EDQQKYINIAYTKAEQMKS 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ + +T+ +   KLN + + +  +L +V      +  +  I I++ +  K  +  A
Sbjct: 206 LANDLFEYSTLKSTNTKLNLARLHIYSMLEQVAAGFELEAEKKGIEIEIEARPKDLTIQA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++++ ++SNA  + +  + + L A   N   +   V+NNG  IP+D  K +F R
Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKREVELRVENNGEPIPKDSQKKIFER 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGLSI +  ++LH G +    SD+  T+   R+P
Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIR-CQSDKNWTSFIIRLP 374


>gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 802

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 14/235 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +ERA     EA  +A   K+ F+ ++S+E+R+P+  IIG ++LL  +   +L+ +Q +Y 
Sbjct: 137 SERA----QEAAERATRTKSEFLANMSHEIRTPIHTIIGMSELLSET---ALDPEQQEYT 189

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-I 669
           E I   + +LL+L+NDILD + ++AG + L   T  L D   +    ++ + H+  +  I
Sbjct: 190 EQIQFGADVLLSLINDILDFSKIEAGKLSLETITFDLYDTAEDAVDMVSLEAHKKGLETI 249

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
             I +      + D  RL QI   + +NA+ F+ KG   +  +  D  D      F V++
Sbjct: 250 VYIENDVPHLLLGDPIRLRQIIVNLFNNAVKFTEKGEVELRISLDDRSDGKVRLRFQVRD 309

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            G  I E+  +++F  F        R+  G GLGLSI ++   + GG + + S +
Sbjct: 310 TGIGIAEEKVQNLFRVFTQVDSSTTRKYGGTGLGLSISKNLSEMMGGRIGVESRE 364


>gi|258512229|ref|YP_003185663.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478955|gb|ACV59274.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 429

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 117/244 (47%), Gaps = 25/244 (10%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY------- 612
           + +R+A + +  FV   S+ELR+PL  I         S LG +     Q VE        
Sbjct: 177 QPIRRAFQRQLEFVADASHELRTPLAVI--------QSNLGIVMEHTDQTVEENLEWLNN 228

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  L  LV D+L LA  D+  M +    + LNDLL  +     T      I + V 
Sbjct: 229 AHGEARRLAKLVQDLLTLARSDSERMPVERRPVALNDLLERIHDLYETIAEMRGIELTVR 288

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           ++  L   + DR RL Q+   ++ NAM F+  G  V + A R+    I SV++ G  I +
Sbjct: 289 AEEPL-VVLGDRDRLHQLLVILIDNAMKFTDAGGKVEIAATRNRNQAILSVRDTGIGIAK 347

Query: 733 DMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV---TTIN 785
           +  + VF+RF     + +  G+ +G GLGLSI +  +  HGG +SI+S  EG+   TT+ 
Sbjct: 348 EHLERVFDRFYTVDTARSRHGEAKGTGLGLSIAKWIVEAHGGRISIAS--EGIGKGTTVR 405

Query: 786 CRIP 789
             +P
Sbjct: 406 VELP 409


>gi|158339630|ref|YP_001521019.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158309871|gb|ABW31487.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 914

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 11/221 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+ELR+PL  I+G+  +L+ S   +++ K  Q V  I    T LL ++
Sbjct: 449 ANQAKSLFIANMSHELRTPLNGILGYAQVLERSP--TISDKAQQQVHIIHKCGTHLLGMI 506

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-D 683
           NDILDL+ ++AG + L    + L   L  V ++   +  +  +      D  L   V  D
Sbjct: 507 NDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAVDPGLPEGVELD 566

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKS 737
            QRL Q+   +LSNA+ F+ +G TV L+ +       D     F V + G  I       
Sbjct: 567 EQRLRQVLFNLLSNAIKFTQQG-TVTLQVSVAEVTRSDYRRLRFGVTDTGVGIAPAHLDQ 625

Query: 738 VFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +FN FV    R  Q  G GLGL+I    + L G  + + S+
Sbjct: 626 LFNAFVQVGDRQKQAEGTGLGLAISRRLVQLMGSQIEVQSA 666


>gi|18310298|ref|NP_562232.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|18144978|dbj|BAB81022.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 821

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487
           +++G T +++ + +     +G+I   N A   +    E  L    +        N+    
Sbjct: 434 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546
           S+Y+NE         I+T   D+ +S +G ++L S S    S I   N    L +V V  
Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538

Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603
             + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     LL TSK    N 
Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598

Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L  ++  S+   +
Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              NI I   +D +      D  ++ +I   +LSNA+ F+  G  + +    D       
Sbjct: 659 ESKNIDIIFDTDYEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADEAWVDIR 718

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IP  M + +F RF+ N     R   G G+GLS+V+S + LH G V +  S+E 
Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778

Query: 781 VTTINCRIPS 790
            +  +  +P+
Sbjct: 779 GSEFSILLPN 788


>gi|84393022|ref|ZP_00991789.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01]
 gi|84376376|gb|EAP93257.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01]
          Length = 572

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 131/260 (50%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTD 592
           +Q +L    +  ++  + A+    E+ ++A+E + +   FV  +++ELR+PL  ++G  +
Sbjct: 169 SQLLLVTDLICSALTHQLAINRNVESRKRAEESERATRDFVAMINHELRTPLNGLLGSAE 228

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+  ++L   +S Q + V  +S S   L  ++ND+LD + ++AG++ L      L+DL N
Sbjct: 229 LISDTEL---SSSQREIVNNLSQSGEFLRTIINDLLDFSKINAGMLDLIPKKFALHDLRN 285

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            ++     +  E  I   + ++      F  D +R+ Q+F  ++ NA+ F+ +G  V + 
Sbjct: 286 TIESIFVNRAIEKQIEFNISVASNVPSHFQGDLERITQLFVNLIGNAIKFTEEGH-VNVD 344

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
              D   F+FSV++ G  I E   K++F  F    +   R   G GLGL+I    + L  
Sbjct: 345 IEWDKNQFVFSVEDTGVGIAESAHKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVALMN 404

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + ++S     TT    IP
Sbjct: 405 GVIGVTSVVGSGTTFTISIP 424


>gi|260777592|ref|ZP_05886485.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605605|gb|EEX31890.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
          Length = 958

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 120/218 (55%), Gaps = 9/218 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K +F+  +S+E+R+P+  ++G   LLK +    LNSKQ  +V+ I+ S T LL +
Sbjct: 465 QASRAKTAFLATMSHEIRTPMNGVLGTARLLKET---GLNSKQGHFVDVINRSGTTLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +ND+LD + ++AG +++      L D++ +V+Q +  +  E NI I  + +  +  F+  
Sbjct: 522 LNDVLDYSKIEAGHLEIRPVDFNLFDMVKDVQQLLDGRAKEKNIEISTLIESDVSQFLYG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           D  R+ Q+ + ++ NA+ F+ +G     V     +D G  +F V + G  I ++  +++F
Sbjct: 582 DVTRISQVLTNLVGNAVKFTEQGHVDIYVTYDPGQD-GQVLFEVSDTGIGISQEEQETLF 640

Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + F  ++     + G GLGL+I +  +   GG + + S
Sbjct: 641 DAFTQASGGMSSKGGTGLGLAISKRIVEAMGGFLQLES 678


>gi|239906656|ref|YP_002953397.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796522|dbj|BAH75511.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 788

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 125/255 (49%), Gaps = 22/255 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-------------KTSKLGS 601
           L E N  L + D +K++F+  VS+ELR+PLT+I+GF  L+                 L +
Sbjct: 522 LAEANIRLSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGREFGEHFSPLAGDNPALAA 581

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              + +  +  +   +  L  L+ND+LDL  +++G M+     I    +L++  QSI   
Sbjct: 582 RGKRIAHNLGVVYGEAERLTRLINDVLDLNRIESGNMQWRDQCIDPVAVLHQAVQSIEGL 641

Query: 662 MHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +   IR + ++       + D  +L+Q+ + +L NA+ F+ +G  V+L+   +    +
Sbjct: 642 LAQRPEIRFRFLAHTSAPPLLMDPDQLVQVIANLLQNAVKFTERGE-VVLEVRAEAEAVL 700

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSI 774
            +V++ G  IP D  +S+F+RF     RG        +G GLGL+I    +  +GG +  
Sbjct: 701 MTVRDQGVGIPADQLESIFDRF-HQVGRGDTIVSPTIKGTGLGLAICRQIVRHYGGRIWA 759

Query: 775 SSSDEGVTTINCRIP 789
            S     +  + R+P
Sbjct: 760 ESRLGEGSAFHVRLP 774


>gi|170751881|ref|YP_001758141.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658403|gb|ACB27458.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1124

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E    A++ K+ +V  +S+ELR+PL+ ++G+  LL++    ++ + +   +  I 
Sbjct: 658 LQEAKERAEAANQAKSRYVVGISHELRTPLSTVLGYAQLLESDP--AIPAHRVNGLRVIR 715

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++++   + L D L+++   +  +  E  +  +    
Sbjct: 716 RSAQHLSGLIDGLLDISRMEAGRLQIHRDEVRLTDFLDQLVDMVRLQAREAGLEFRFSRP 775

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL Q+   +LSNA+ F+  G TV L  +  +   +F++++ G  IPE 
Sbjct: 776 EILPAVVATDEKRLRQVLLNLLSNAIKFTEAG-TVSLDLSYRSQIAVFTIRDTGPGIPEA 834

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F   +    R   G GLGL+I      L GG ++++++  G T    R+
Sbjct: 835 DLARIFEPFERGSTPAARSTPGTGLGLTIANLLAQLLGGEITVTAAPGGGTQARLRL 891


>gi|183219921|ref|YP_001837917.1| sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910045|ref|YP_001961600.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774721|gb|ABZ93022.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778343|gb|ABZ96641.1| Putative sensor protein with PAS domain [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 504

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 146/331 (44%), Gaps = 24/331 (7%)

Query: 477 GTHIRNIAATCSRYYNESDGWDL--------FAAIITSFDDERKS-----LQGTLELLSD 523
           G H RN  A   + +    GWD         ++ I   F + +       L+  ++L   
Sbjct: 167 GIH-RNGQAINHKEFPHFTGWDCKNKETNLCYSDIKEIFPENKLEEIQTILRQVIDLGVS 225

Query: 524 SVLEYSIIPLPNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
             +EYSI      +      T     D++   R +TE+    +KA+ +KN F+  VS+EL
Sbjct: 226 KAVEYSIHDADGEKCFEARFTKTGEVDALAIIRNITER----KKAEALKNEFISLVSHEL 281

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT+I G  DLL     G ++++    +     ++  L+  V D+LD+  +D+G +  
Sbjct: 282 RTPLTSIKGSIDLLLAGVAGEVSNQTKSLLNICRKNTQRLVRFVTDLLDIEALDSGNINF 341

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T  L ++L      + T   + ++ +   S+    S   D  RL    + ++SNA+ 
Sbjct: 342 KFRTYQLKEILQTSVDGMRTFAEQYHVLLNFDSNFPQTSVYVDEDRLNHCITNLISNAVK 401

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           ++ K S V +    D       +++NG  I  +    +F+RF   A    +   G GLGL
Sbjct: 402 YTPKFSEVTISVQTDATKAKIQIRDNGPGIDPNFAPRLFHRFAQGAPPKDKLVGGSGLGL 461

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI + F+    G +   S D G T     +P
Sbjct: 462 SITKGFVEAMNGKIYFFSDDSG-TVFTIELP 491


>gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
 gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
          Length = 1128

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 7/239 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ I 
Sbjct: 446 IQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIII 505

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVI 672
            S   L NLV+D+LD   +  G M +  S + L      V +  +  +    IRI  +V 
Sbjct: 506 KSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQVP 565

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D K+ S  AD QRL Q+   ++ NA+ ++S+G  VI     D+   +  V + G  IP 
Sbjct: 566 ADLKVVS--ADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDHVRV-QVVDTGQGIPA 622

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681


>gi|70728487|ref|YP_258236.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68342786|gb|AAY90392.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1200

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 19/255 (7%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLG 600
           ++++T+  R E  L E  +A  +A+  K +F+  +S+E+R+P+T I+G  +L K  ++L 
Sbjct: 690 WIDITERKRLENQLVEARQAADQANAAKTAFLSTMSHEIRTPMTAILGLLELEKEQARLR 749

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +   ++  V Y SA    L+ L+ D LDLA ++AG M L      L      ++Q    
Sbjct: 750 GVPFSEALRVAYQSAQE--LIGLMGDSLDLAKIEAGYMHLVPQVTALKPFFESIRQLFEV 807

Query: 661 KMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 ++++ V S+   G ++ D  RL Q+   +LSNA+ F+++G   +    + +   
Sbjct: 808 TARNQGVQLQLVFSERAKGRYLFDPARLRQVVHNLLSNALKFTAQGEVRMTVECQPDESG 867

Query: 720 I----FSVKNNGSSIPEDMCKSVFNRFV------SNAHRGQRRGVGLGLSIVESFINLHG 769
           +     SV + G  I  +    +F  FV      S+A+ G     GLGLSI    + L G
Sbjct: 868 LECLRISVADTGRGISSEQQAKLFTPFVQADAMTSSAYGG----TGLGLSICRQLVELMG 923

Query: 770 GHVSISSSDEGVTTI 784
           G + +  S+ GV T+
Sbjct: 924 GRIHL-LSEPGVGTV 937


>gi|330836391|ref|YP_004411032.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           coccoides DSM 17374]
 gi|329748294|gb|AEC01650.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           coccoides DSM 17374]
          Length = 627

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 125/236 (52%), Gaps = 9/236 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L++ ++++  FV +VS+EL++PLT I GF++ L    LG + S +    + + I+ ++  
Sbjct: 372 LKRLEQVRKDFVANVSHELKTPLTAINGFSETL----LGGMISSEDIGLFSKIINRNARQ 427

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           +  +++D+L LA+++     L      L +L+ E  +  + + +  ++ +   + D    
Sbjct: 428 MQGIIDDLLLLASLEDDHAALTMKRCTLEELVKETCEDTSYRANSRSVILTTTVHDENGR 487

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             + +   L+Q    ++ NA+ +S  GS V +KA  D     FSV + GS IPE     +
Sbjct: 488 GVMVNPSLLVQALVNLVINAITYSEPGSEVRIKAEGDQDTVTFSVMDQGSGIPEKHLTRI 547

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F RF  V  A    + G GLGLSIV+  +++HGG VS+ S +   +T    IP ++
Sbjct: 548 FERFYRVDKARSRNQGGTGLGLSIVKHVVSMHGGQVSVQSVENLGSTFTITIPREQ 603


>gi|260778490|ref|ZP_05887382.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604654|gb|EEX30949.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 812

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  V  E +L  K      A+  K+ F+  +S+ELR+P+  I+G  DLLK +   +LN
Sbjct: 412 DITQRVELEESLKIKAVEAEAANIAKSQFLAAMSHELRTPMNGILGVGDLLKNT---TLN 468

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV+    S   +LN++NDILD + ++AG ++L     +L D++  + +       
Sbjct: 469 EEQQEYVDTFLGSGKHMLNVLNDILDFSKIEAGKLELEKVEFLLKDVVARLTRLYEPLCA 528

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720
           + ++  K   S     + VAD  R+LQI   +LSNA+ F+S+G   +     +    I  
Sbjct: 529 DKHLEFKCEYSQSCDRALVADETRILQILQNLLSNALKFTSEGGITLSLDVVEQSHRIEL 588

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              V + G  I  +   ++F+ F        RR  G GLGLSI    +    G V +SS
Sbjct: 589 HIDVSDTGIGISPEKQSAIFDPFSQAESDTTRRFGGTGLGLSITRDLVKAMNGTVDLSS 647


>gi|242280141|ref|YP_002992270.1| cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123035|gb|ACS80731.1| Cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 755

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 10/247 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    E    A+  K+ F+  +S+E+R+P+  I+G TDLLK S        Q +Y++ 
Sbjct: 362 RKLNAAKENAVAANHAKSQFLAVMSHEIRTPMNVILGTTDLLKDSH---PRDDQKKYIKL 418

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +   LL L+NDILD++ V+AG++ L       + ++ +          +  I +   
Sbjct: 419 LDDAGEGLLALINDILDMSKVEAGLLDLESIDFNPSKIMRQSCSVFEHSASQKGIELACR 478

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNG 727
            DGKL   V  D  R+ QI   ++ NA+ F+  G   +    +    +N +  F +++ G
Sbjct: 479 VDGKLPGLVQGDPVRVKQILLNLIGNAVKFTDTGGVYVQAGYKQLTNNNVELKFEIQDTG 538

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP+D   ++F  F        R  +G GLGLSI +   ++  G +++SSS    +T  
Sbjct: 539 PGIPKDRQHAIFEHFTQADSSITREYQGTGLGLSISKKLCDMMNGKITVSSSPGSGSTFT 598

Query: 786 CRIPSKE 792
             I  KE
Sbjct: 599 FTITMKE 605


>gi|83644635|ref|YP_433070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83632678|gb|ABC28645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 957

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EA+ +A  +K+ F+ ++S+E+R+PL  IIGFT LL  S LG    +Q   +  I  SS
Sbjct: 283 RKEAI-EASRVKSEFLANMSHEIRTPLNGIIGFTHLLLKSNLGP---QQRDQLNTILKSS 338

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            ILL ++NDILD + ++AG + L+ +T+ L +++ +V   +A   HE N+ +  +    +
Sbjct: 339 EILLTIINDILDFSKIEAGKLVLDNTTVNLQEIVEDVLTMLAPGAHEKNLDLAGLVYSDV 398

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPE 732
            S +  D  R+ QI + +++N + F+  G  V+     D  D       +V ++G  +  
Sbjct: 399 PSHIMGDPLRIKQIVTNLVNNGIKFTQSGEVVVRVMLEDESDESSLIKITVTDSGVGLSR 458

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +++F+ F        RR  G GLGL I        GG + + S
Sbjct: 459 VQQQTLFSAFSQADASTARRFGGTGLGLVISRRLTEQMGGQIGVES 504


>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1768

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
            LT+  +    A + K+ F+ ++S+E+R+P+  IIG + L L+TS    L+ KQ  YVE I
Sbjct: 1026 LTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTS----LDKKQQNYVEKI 1081

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VI 672
              +S  LL ++NDILD + ++AG + +      L+ +L ++    + K  +  + +   +
Sbjct: 1082 DRASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAV 1141

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGS 728
            +       V D  RL Q+   +++NA+ F+ +G  +  I +  R++ + +  FSV++NG 
Sbjct: 1142 APNIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVREDEEILLKFSVRDNGI 1201

Query: 729  SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             + E+    +F  F        R+  G GLGL+I +  + L GG + + S
Sbjct: 1202 GLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVES 1251


>gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 929

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 135/256 (52%), Gaps = 15/256 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A++ L E  E L      K+ F+ ++S+ELR+PL +I+  +++L  +   +L  +++++
Sbjct: 486 KAKKELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENSQHNLTDEEAEF 545

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I +S   LL L+NDILDL+ V+AG + + ++ + ++++  +++ + A    + N+  
Sbjct: 546 AKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKKNLAF 605

Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI-- 720
            +  +D  +  F  D +R  QI   +LSNA  F+ +GS  +       +   +N   I  
Sbjct: 606 HISKADHVVDVFYTDEKRFQQILKNLLSNAFKFTEQGSVTLDINQLTPQQLTNNMQDISK 665

Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                +V + G  IP+D  + +F  F        R+  G GLGLSI + F  L GG +++
Sbjct: 666 DWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITL 725

Query: 775 SSSDEGVTTINCRIPS 790
            S++   ++    IPS
Sbjct: 726 QSTEGQGSSFTLTIPS 741


>gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 536

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 14/281 (4%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-------TEKN 559
           FD+E+K  +         V+  SI    N   M+   +V+  V  E+ L        E+ 
Sbjct: 92  FDNEQKIEKKERIYQYLHVIPISIDDEQNRFCMIQITDVSQQVTREKLLREQMVVAKERE 151

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              +KA + K  F+  +S+E+R+PL  I+G  D L  +   +L ++Q +Y+  +  S   
Sbjct: 152 VEAKKASQAKTDFLASMSHEIRTPLNAILGMADTLTET---NLTNEQMEYLTVLRNSGKA 208

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L N++NDILDL+ +++G +++ +    + DLL E       K     I+I   +SD    
Sbjct: 209 LYNIINDILDLSRIESGKLEIEHIEFSIRDLLKETISLFLMKAKSKGIQISYSVSDDIAE 268

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               D  R+ QI   ++ NAM F+  G   +    ++D       V++ G  IP +   S
Sbjct: 269 QIKGDSTRIQQILINLIGNAMKFTEIGKIYVDASLSQDQKSLCLIVEDTGIGIPNEKLNS 328

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  F        RR  G GLGL+I +  I +  G +S+ S
Sbjct: 329 IFESFTQVDSSTTRRYGGTGLGLTITKKLILMMNGEISVQS 369


>gi|169599701|ref|XP_001793273.1| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
 gi|160705302|gb|EAT89406.2| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
          Length = 1733

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 131/250 (52%), Gaps = 20/250 (8%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + L++  + K+ F+ ++S+E+R+PL  I G  + L  S L   N++Q ++V  I +S+  
Sbjct: 1107 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDSIL---NAEQLEHVNIIKSSTDS 1163

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LLNL+NDILDL+ V+AG++KL+   + L  L+ EV         +  + +  + D  + S
Sbjct: 1164 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLIEEVNDLSMGLAIQKGLELNYLVDEGVPS 1223

Query: 680  FV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF-------IFSVKNNGS 728
             V  D+ R+ Q+   ++ NA+ F+S G   +   +++   +G          F V + G 
Sbjct: 1224 MVKGDKFRIRQVLLNVVGNAIKFTSSGEIFVRCKVQSPERSGPLGDNETVVRFEVIDTGR 1283

Query: 729  SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT--- 782
               E   K +F RF  +  +   Q  G GLGL+I   F+ LHGG +   S  ++G T   
Sbjct: 1284 GFTEQEAKFLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGKMDARSVPNKGSTFFF 1343

Query: 783  TINCRIPSKE 792
            TI   +P++E
Sbjct: 1344 TIKFGLPTEE 1353


>gi|56460833|ref|YP_156114.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR]
 gi|56179843|gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina loihiensis L2TR]
          Length = 866

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 12/231 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
           + +  E   +A++ K  F+ ++S+E+R+P+  I+G  +L LKT     L  KQ +Y++ I
Sbjct: 194 MEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKTE----LTQKQKRYIKVI 249

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +SS  LL ++NDILD + +DAG + +      L D+L  +    A + ++ ++   +  
Sbjct: 250 DSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLADMFAYRAYDKDLEFIINL 309

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGS 728
              + +  + D  RL Q+   ++SNA+ F+  G    +  +L ++RDN     SV + G 
Sbjct: 310 PANIPTRLIGDPLRLNQVLVNLISNAIKFTEDGEINVAVNLLDSSRDNVLLRISVTDTGI 369

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            + E+   ++F  F        R+  G GLGL+I    I L GG + ++S+
Sbjct: 370 GMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLILLMGGDIGVTSA 420


>gi|332995524|gb|AEF05579.1| Signal transduction histidine kinase [Alteromonas sp. SN2]
          Length = 633

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 13/227 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  + A++ K  F+  +S+E+R+PL  I G   LL  + L   + KQ QY   + +S+TI
Sbjct: 250 ERAQAANKAKTDFLAVMSHEIRTPLNGIQGLATLLLDTPL---DDKQKQYASDLRSSATI 306

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L N++ND+LDL+ +++G+ +++ +   L+ +LN++   +      N+ R++  S      
Sbjct: 307 LANVINDVLDLSKIESGMSEVDVTEFNLDSMLNDLITLLGINASANHTRLEYKSKNLDSV 366

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIP 731
            V +D  +L QI   + SNA+ F+ KG+  +  + +       +    + SVK+ G  I 
Sbjct: 367 MVTSDVTKLRQIVINLASNAIKFTHKGTVTVTASLKKVAGPSVEENRLVISVKDTGIGIE 426

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            D  + +F++F  +     RR  G GLGLSI +    + GG V + S
Sbjct: 427 PDRLEHIFDKFTQSDSSISRRYGGTGLGLSIAKELSQILGGDVKVMS 473


>gi|315187538|gb|EFU21294.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 900

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 21/258 (8%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R  R L E N  L KA+  K+ F+ +VS+E+R+PL  I+GF + LK    G  + ++
Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALK----GEQDPRE 438

Query: 607 SQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            + +++ + + +  L  L+++ILD+  ++ G + L+ S   L++++  V      ++ E 
Sbjct: 439 REGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYV-----CRVMEE 493

Query: 666 NIRIKVIS------DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           N R K +S      DG     V D  RL Q+   ++ NA+ F+ +G   +     + G+ 
Sbjct: 494 NARRKGLSFSFEIEDGVPVWVVGDPFRLQQVLMNLVGNAVKFTEEGGVRVRVGCVEEGEG 553

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                 V++ G  IPE+M + VF  FV       RR  G GLG++I    + L GG + +
Sbjct: 554 RWIEVEVRDTGIGIPEEMREKVFESFVQGDTSTTRRYGGSGLGMTIARELVRLMGGDIGL 613

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     T +  RIP  E
Sbjct: 614 ESEVGKGTRVWFRIPCVE 631


>gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
 gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
          Length = 1053

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 12/252 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
           Q  +   +VT    AE+ L E      +A E+K+ F+ ++S+E+R+P+  IIG + L LK
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T     L  KQ  YV  I +S+T+LL ++NDILD + ++AG + + +    L ++L+ V 
Sbjct: 326 TE----LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712
                K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G  S  +   
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441

Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            R  G    +F+V + G  + E   +++F  F        R+  G GLGLSI    + L 
Sbjct: 442 ERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 769 GGHVSISSSDEG 780
            G +S++S  + 
Sbjct: 502 EGEISVTSKPDA 513


>gi|255013265|ref|ZP_05285391.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 622

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 134/250 (53%), Gaps = 8/250 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ +    E +L E       AD++K+ ++  +S+E+R+PL  I GF++L+        +
Sbjct: 380 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 436

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y  + +++L++ +  S   ++ 
Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 495

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +++ +  +     F  D  RLLQ+ + +++NA+  + +GS  +    + +    F V
Sbjct: 496 PGGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYV 555

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I ++  K VF+RFV  N +     G+GLGL+I +  +   GG + ++S     +
Sbjct: 556 RDTGIGIDKEKLKDVFDRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 612

Query: 783 TINCRIPSKE 792
             +  +PS E
Sbjct: 613 EFSFILPSHE 622


>gi|196231316|ref|ZP_03130175.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224652|gb|EDY19163.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 895

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 3/226 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L   NE L++ D +K+ F+  +S+ELR+PL ++IGFT +L+    G +N +Q + +  
Sbjct: 639 RDLEAANERLQELDRLKSEFLATMSHELRTPLNSVIGFTGILRQELAGPMNDEQKKQLGM 698

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + +S+  LLNL+ND+LDL+ V++G M+L     V+ DL+ E+ Q +A ++ +  +R++  
Sbjct: 699 VHSSARHLLNLINDLLDLSRVESGKMELFLEDFVVADLVKEIDQCLAPQVQQKKLRLETS 758

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D        DR +  QI   + +NA+ F++ G  V LK   D     F V + G  I  
Sbjct: 759 LDQPTLRIRTDRNKSFQILLNLTNNAVKFTAVGR-VTLKVTSDADQVQFEVADTGIGIKP 817

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +    +F  F  V  + R    G GLGL + +    + GG++++ S
Sbjct: 818 ESLPHLFEAFRQVDGSARRVYEGTGLGLYLSKQLAKMLGGNITVES 863


>gi|117926231|ref|YP_866848.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609987|gb|ABK45442.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1118

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+TD  + E  L +  E    A   K  F+  +S+E+R+P+  ++G  +LL  +    +N
Sbjct: 722 NITDLKQTELKLRKAVEEADCATHAKGDFLAVMSHEIRTPMNLVVGMAELLLET---DVN 778

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q  Y+E +  +   LL+L+N+ILDL  +D G +KL         LL+EV   I+    
Sbjct: 779 AEQKHYLEKLQKAGDTLLSLINNILDLTKLDEGQLKLLDEPFAPQALLDEVSGIISLAAE 838

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719
              + +   I +G     + D  R+ Q+   +LSNA+ F+ +G    ++ ++ A      
Sbjct: 839 AKGLTLSCEIQEGVPERVLGDSVRIKQVLLNLLSNALKFTQQGFIRLSLTVEGAEGAQQL 898

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            ++V ++G  IP+     VF RF        RR  G GLGL+I +  + L  G + +SS
Sbjct: 899 CYAVSDSGMGIPDYHLDEVFERFSQGDSSMTRRFGGSGLGLAICKKLVILMQGQIQVSS 957


>gi|182413537|ref|YP_001818603.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840751|gb|ACB75003.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 1257

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 5/215 (2%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K++F+ H+S+ELR+PL  ++G+  +L         +++   ++ I  S   LL L+N++L
Sbjct: 808  KSTFLAHMSHELRTPLNGVLGYAQVLARDPAQPPAARER--LQIIIQSGEHLLALINEVL 865

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            DLA V+AG M+L  +T  L  L+  V   +        +         L   V  D Q+L
Sbjct: 866  DLARVEAGKMQLRPTTCALPRLVESVADLMRAPCEAAGLGFACAVAAGLPRLVRTDEQKL 925

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             Q+   ++ NA+ F+  G+  +  A   +G   F V + G  I  +   ++F  F ++A 
Sbjct: 926  RQVLLNLVGNAVKFARHGAVRLAVAPLPDGRVRFEVSDTGVGIAPERLATLFQPFATSAE 985

Query: 748  RGQRRGVGLGLSIVESFINLHGGH-VSISSSDEGV 781
             G  RG GLGL++  S + L GG  ++ S   EG 
Sbjct: 986  HGA-RGTGLGLALSRSMVELLGGRLLAESRPGEGA 1019


>gi|22298910|ref|NP_682157.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
 gi|22295091|dbj|BAC08919.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
          Length = 1060

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 8/233 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AER L +  EA   A++ K+ F+ ++S+ELR+PL  I+GF+ +L + +  +L  +  Q 
Sbjct: 584 QAERELLKAKEAAEAANKAKSIFLANMSHELRTPLNAILGFSQILLSDR--TLAPQHRQT 641

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I+ S   LL L+ND+LD+A ++AG M L  +T  L  +L ++++ +  +     +R+
Sbjct: 642 LEKINRSGEHLLGLINDVLDMAKIEAGRMILQQTTFDLRRMLRDLEEMLKVRAEAKGLRL 701

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKN 725
                  L   V  D  +L Q+   +L N + F+ +GS V LK    A++     F V +
Sbjct: 702 VFDLAANLPVAVTTDEMKLRQVLVNLLGNGIKFTKEGS-VCLKVSYRAQEPPRLAFEVSD 760

Query: 726 NGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G  +     K +F  FV +++ +    G GLGL+I   F+ L GG + + S+
Sbjct: 761 TGIGMTPQELKMLFQPFVQTDSSKKVSEGTGLGLAISRQFVQLMGGDIQVRST 813


>gi|307730373|ref|YP_003907597.1| osmosensitive K channel signal transduction histidine kinase
           [Burkholderia sp. CCGE1003]
 gi|307584908|gb|ADN58306.1| osmosensitive K channel signal transduction histidine kinase
           [Burkholderia sp. CCGE1003]
          Length = 957

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 116/215 (53%), Gaps = 7/215 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622
           +++ ++NS +  +S++LR+PLT I+GF+ +L  S+  + ++++  + VE I   +  +  
Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSREQAGDARRDDELVEAIHEEALRMTG 735

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +V ++LD+A + AG ++LN    +L + +    ++    +  + +R+++ +D  L     
Sbjct: 736 IVTNLLDMARLQAGSLQLNRQWTLLEETVGAALRACRRVLAGHPVRVELPADLPLLHL-- 793

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSV 738
           D   + ++FS +  NA  ++  G+ + + A R   D   F+  SV +NG  +P  M   V
Sbjct: 794 DAVLMERLFSNLFENAAKYTPPGTPLTIGAQRVDEDGKSFVRVSVDDNGPGLPAGMEARV 853

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           F +F        + G+GLGL+I  + +  HGG + 
Sbjct: 854 FEKFTRGEKESAKPGIGLGLAICRAIVEAHGGSIG 888


>gi|237723104|ref|ZP_04553585.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447626|gb|EEO53417.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 789

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G  + + +Q++
Sbjct: 549 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 607

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 608 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 667

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727
            + +        D  RL Q+ + +++NA  F+S G   I     D+   G     V++ G
Sbjct: 668 RMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 725

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I E+  + +F RF    +  Q  G GLGLSI ++ I    G +S++S     T    R
Sbjct: 726 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 783

Query: 788 IPS 790
           +P+
Sbjct: 784 LPN 786


>gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
 gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
          Length = 946

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    
Sbjct: 440 VLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 496

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +   
Sbjct: 497 ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLP 556

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  V+    +  GD+
Sbjct: 557 LVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIVL--HVQCAGDY 614

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           +  SV++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +++ +
Sbjct: 615 LQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVET 674

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 675 EPGMGSRFTIRIP 687


>gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
 gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
          Length = 1522

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 126/240 (52%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T    AE  L    EA  +A++ K++F+ ++S+ELR+P+  I+G   LL+ +    L+
Sbjct: 746 DITQQREAEDILKTAREAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLD 802

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ+ Y     A++  LL L+NDILD + +++G M+L      ++ +L ++   +++ + 
Sbjct: 803 RKQADYAVKSEAATRTLLRLLNDILDFSKIESGKMELECIPFDIHVMLRDLAVILSSNLK 862

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI- 720
              + +    D  L  FV  D  RL QI + +  NA+ F+  G  V+ +K    +   + 
Sbjct: 863 VKKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHVT 922

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I  +  +S+F+ F        RR  G GLGL I + F+ L GG +++ S
Sbjct: 923 LHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTLES 982


>gi|186682032|ref|YP_001865228.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464484|gb|ACC80285.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 629

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 13/243 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + +  R E+ L +  E  + + + K+ F+ ++S+ELR+PL  I+G+T +L+ ++  SL+ 
Sbjct: 140 IVERKRIEKELRQAEEVAQNSSQAKSEFLANMSHELRTPLNGILGYTQILQRTE--SLSE 197

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K  + +  I    + LL L+ND+LDL+ ++A  ++L      L   ++ V +    +  +
Sbjct: 198 KGRKGLSVIYQCGSHLLTLINDVLDLSKIEARKLELYPVDFYLPAFIDSVTEICRIRAEQ 257

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNG- 717
             I   +  D  L + +  D +RL Q+   +LSNAM F+ +GS      VI + +  NG 
Sbjct: 258 KVIAFNIEIDPNLPTGIHGDEKRLRQVLINLLSNAMKFTHQGSVTFKTQVINQESNANGK 317

Query: 718 ---DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 F V + G+ I  +  + +F  F    + + Q  G GLGL+I +  + L GG + 
Sbjct: 318 TNYKIRFEVVDTGTGITPEQAEKIFQPFEQVGSQKRQSEGTGLGLAISQKIVLLMGGQIK 377

Query: 774 ISS 776
           + S
Sbjct: 378 VQS 380


>gi|332991979|gb|AEF02034.1| histidine kinase response regulator hybrid protein [Alteromonas sp.
           SN2]
          Length = 539

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 130/252 (51%), Gaps = 6/252 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLN 603
           +++SV A   L  KN  L +  + K+ F+ ++S+E+R+PL  I  F++LL+  +K  SL 
Sbjct: 150 LSESVVAHLELKRKNRELERTSQFKSDFLSYISHEIRTPLNAINTFSNLLEGEAKQLSLP 209

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +  +  + +IS S   LL +VN +LD+  ++AG M++    +   D    +      +  
Sbjct: 210 TNFTDSLGHISKSGERLLEIVNSVLDMKQIEAGKMRVMPRPVGTADFFTHLFSLTRIRAE 269

Query: 664 ENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           + N+    VI D    S   D  +  Q+   +LSNA+ ++     V ++     G+ + +
Sbjct: 270 DGNVIFNSVIDDNVPYSLNFDDTKFGQVALNLLSNAIKYTHANKHVSIRVKYKQGNLLLA 329

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +K+ G  I E+  K +F  F  + NAH  Q  G GLGL+I +  + L GG + +SS    
Sbjct: 330 IKDEGIGISEEEQKKLFAPFERMENAH--QFDGTGLGLNITKKLVELMGGSIKLSSKLNE 387

Query: 781 VTTINCRIPSKE 792
            T ++  IP+++
Sbjct: 388 GTHVSVAIPAEK 399


>gi|310830013|ref|YP_003962370.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612]
 gi|308741747|gb|ADO39407.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612]
          Length = 803

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 14/263 (5%)

Query: 539 MLTFVNVTD----SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +LTF +V D      R   AL +      +A+  K+ F+  +S+++R+P+  IIG   + 
Sbjct: 390 VLTFRDVDDIRKEEERKRAALLDALNLAEQANNAKSDFLSRMSHDIRTPMNAIIGMASIA 449

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +   ++  K    +  I AS+  LL L+NDILD++ +++G M +      L  LL E+
Sbjct: 450 EANIRDTV--KTEDCIHKIQASAHFLLALINDILDMSKIESGKMSIIREPFDLCALLREL 507

Query: 655 KQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  I  +  E   +  V+    +   +  D  RL QI   +LSNA+ ++  G  + L+  
Sbjct: 508 EVIIDAQAREKGQQFSVLMPAHMEAEYYGDSLRLNQILMNLLSNAVKYTPDGGKITLRVN 567

Query: 714 RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            D          F V++NG  + E   K ++  F  +  + ++R  G GLGLSI  + ++
Sbjct: 568 EDRKKGKKSVMRFEVEDNGIGMSEAFLKHIYEPFRQDERKEEKRQEGTGLGLSITRNLVH 627

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L GG +SISS     T     +P
Sbjct: 628 LMGGSISISSELGKGTCFTVELP 650


>gi|284050736|ref|ZP_06380946.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 478

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 13/212 (6%)

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATV 633
           ++S+E+R+P+  I+GF DLLK    G + + KQ  Y++ I+A    L++L++DILDL+ +
Sbjct: 2   NMSHEIRTPMNAILGFCDLLK----GLVEDDKQQSYLDAIAAGGRALISLIDDILDLSKI 57

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFS 692
           +AG ++L Y  + L  LL E++Q          + +++  +  +   +A D  RL QI  
Sbjct: 58  EAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQINFEPNVPKIIAFDEVRLRQILF 117

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            I+ NA+ F+  GS  I   A++  D         V + G  I  D  + +F  FV +  
Sbjct: 118 NIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADTGIGINPDQHQQIFEAFVQSEG 177

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +  RR  G GLGL+I     +L GG +++ S 
Sbjct: 178 QSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQ 209


>gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1079

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 10/243 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            VN       E  L +       A   K+ F+ ++S+E+R+PL  +IG + LL  ++L  
Sbjct: 539 LVNARHRKSREEELNQARLQAEHATRAKSEFLANMSHEIRTPLNGVIGMSGLLLDTEL-- 596

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +S+Q  + E +  S+  LLNL+NDILDL+ ++A  ++L      L   + +    +  +
Sbjct: 597 -DSQQRSFAETLKTSAQTLLNLINDILDLSKIEADRLQLETKGFNLETTVKDSAGILNYQ 655

Query: 662 MHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
             E  +++  VI  G     + D  RL Q+   +L NA+ F+S+G   +    ++   D+
Sbjct: 656 AMEKGLKLGYVIHPGVHHCLLGDEGRLSQVLVNLLGNAIKFTSQGQVDLEVSPVQEEADH 715

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +F V + G  IPE+    +F  F  ++ +      G GLGL+I +S + + GG + +
Sbjct: 716 VRLLFEVHDTGIGIPEEKQDQLFTPFHQLNTSVTRSFGGTGLGLAICKSLVQMMGGEIGV 775

Query: 775 SSS 777
            SS
Sbjct: 776 KSS 778


>gi|158340438|ref|YP_001521794.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158310679|gb|ABW32293.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 914

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 11/221 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+ELR+PL  I+G+  +L+ S   +++ K  Q V  I    T LL ++
Sbjct: 449 ANQAKSLFIANMSHELRTPLNGILGYAQVLERSP--TISDKAQQQVHIIHKCGTHLLGMI 506

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-D 683
           NDILDL+ ++AG + L    + L   L  V ++   +  +  +      D  L   V  D
Sbjct: 507 NDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAVDPGLPEGVELD 566

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKS 737
            QRL Q+   +LSNA+ F+ +G TV L+ +       D     F V + G  I       
Sbjct: 567 EQRLRQVLFNLLSNAIKFTQQG-TVTLQVSVAEVTRSDYRRLRFGVTDTGVGIAPAHLDQ 625

Query: 738 VFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +FN FV    R  Q  G GLGL+I    + L G  + + S+
Sbjct: 626 LFNAFVQVGDRQKQAEGTGLGLAISRRLVQLMGSQIEVQSA 666


>gi|71018371|ref|XP_759416.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
 gi|46098947|gb|EAK84180.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
          Length = 1482

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 134/253 (52%), Gaps = 24/253 (9%)

Query: 543  VNVTDSVRAE----RALTEKNEAL------RKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            +++TD  RAE     ++ E++ AL      ++A  IK+ F+ ++S+E+R+P+  +IG ++
Sbjct: 894  MDITDRRRAELKLEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSE 953

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  ++   L+ +Q  + E I  S+  LL ++NDILD   ++ G M L  +   LN ++ 
Sbjct: 954  LLCDTQ---LSQEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIM 1010

Query: 653  EVKQSIATKMHENNIRIKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
            + ++ +     +  +  +  ++ +L   G  V D  RL Q+ + +L+NA+ F++ GS   
Sbjct: 1011 DTQKMLTFATQKKGLEFR--NECQLNFTGQIVGDAGRLRQVLTNLLTNAIKFTAVGSITL 1068

Query: 709  -ILKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             +++   D       F V++ G  I +   K +F  F        RR  G GLGLSI ++
Sbjct: 1069 RVIETYEDQKSLHVHFEVRDTGCGISQATLKRLFQPFSQADPSFARRFGGTGLGLSICKN 1128

Query: 764  FINLHGGHVSISS 776
             ++L GG + + S
Sbjct: 1129 LVDLMGGTIGLES 1141


>gi|260103046|ref|ZP_05753283.1| sensor histidine kinase [Lactobacillus helveticus DSM 20075]
 gi|260083136|gb|EEW67256.1| sensor histidine kinase [Lactobacillus helveticus DSM 20075]
 gi|328464397|gb|EGF35806.1| two-component sensor [Lactobacillus helveticus MTCC 5463]
          Length = 382

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++ K+  + +VS+++R+PLT+IIG+  LLK+         Q +YV+     +  + +
Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYVDIAYTKAEQMKS 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ +  T+ +   KLN +++ +  +L +V      +  +  I IK+ +  K  +  A
Sbjct: 206 LANDLFEYTTLKS--TKLNLTSLHIYSMLEQVAAGFELEAEKKGIEIKIEARPKDLTIRA 263

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++++ ++SNA+ +    + + L A   N   +   V+NNG  IP+   K +F+R
Sbjct: 264 DAEKLVRVYNNLISNALKYGIGATQIKLVANLVNKREVELRVENNGEPIPKKSLKKIFDR 323

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGLSI E  ++LH G +    SD+  T+   R+P
Sbjct: 324 FYRVETSRNTKTGGTGLGLSITEGVVDLHHGTIR-CESDKNWTSFIIRLP 372


>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 818

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 14/235 (5%)

Query: 553 RALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L E  E +R+A E        K+ F+  +S+E+R+P+  ++G T+LL  +    L+ +
Sbjct: 163 RQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNT---DLSKE 219

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q+++VE +  S   LL ++N+ILD + ++AG M+L      L+ L  +     A    + 
Sbjct: 220 QARFVESVRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQLAADAVAMFAEDAAKK 279

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723
            I +   I  G  G F  D  RL Q+   +L NA+ F+ +G+ T+ +  AR+      +V
Sbjct: 280 GIALSCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLAREPALVRVTV 339

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++ G  I  +  + +F+ F        RR  G GLGL+I +    L GG + +SS
Sbjct: 340 EDTGIGISRESQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGVMELSS 394


>gi|154252838|ref|YP_001413662.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
 gi|154156788|gb|ABS64005.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
          Length = 539

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 164/374 (43%), Gaps = 29/374 (7%)

Query: 425 LETKY---NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG---- 477
           ++ KY     +  +  E +D L  G  +FGPD  I LSN      +      L  G    
Sbjct: 1   MDEKYLSDQEMAAIVREAVDRLPGGFVIFGPDHEILLSNAQNERDFPFTNEALRQGKTYL 60

Query: 478 --TH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             TH  ++ +A         S   ++   +      E ++  GT       V++   IPL
Sbjct: 61  EATHFAVKKVAPDLPDEVALSVARNIHDTLAKGEPVELRTHLGT-------VMQVIEIPL 113

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    +VT     ER L +  +    A+E K++F+ ++S+E+R+PL  I+G   L
Sbjct: 114 SFGGWVAVGADVTALRERERELKKSRKQAEAANEAKSAFLANISHEIRTPLNGILGMAQL 173

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           + +   G L   Q   +E I  S   L+ L+ND+LDL+ ++AG   ++     L  LL  
Sbjct: 174 MAS---GDLTPGQKDQIETILDSGKTLMALLNDVLDLSKIEAGRFDISPIDNDLGQLLRR 230

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
           +++  A +  E  + + +  +  +   +  D  R+ Q  S ++SNA+ F+ +GS  +   
Sbjct: 231 MEKLWAPRASEKGLVLTLDINSAMPELLRFDPIRVRQCVSNLVSNAIKFTERGSVRVAAR 290

Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            + A     D +  + + G  +  +    +F  F        RR  G GLGLSI      
Sbjct: 291 CVPAGEGEFDVLVEISDTGIGMSGETLGKLFAPFTQADASTSRRFGGTGLGLSISRKLAQ 350

Query: 767 LHGGHVSISSSDEG 780
           L GG V ++ S+EG
Sbjct: 351 LMGGDV-VAESEEG 363


>gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1917

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 16/243 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A R+L EK E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L +KQ +Y
Sbjct: 1234 QARRSLEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTDNVDGNLTAKQVEY 1293

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I ++   LL L+NDILDLA +++G M ++ + I L++L  ++++          +  
Sbjct: 1294 SQTIYSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIERGFGQVAQNKGLTF 1353

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--------- 718
             V    +L + V  D +RL Q+   +LSNA  F+ +G   + ++ A+   +         
Sbjct: 1354 AVELAPELPTTVNTDIKRLQQVLKNLLSNAFKFTERGEVRLKIEVAKPGWNSNQQPLNSA 1413

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F+V + G  I  D  K +F  F        R+  G GLGLSI     +L GG + 
Sbjct: 1414 QNVIAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGLSISREIAHLLGGEIK 1473

Query: 774  ISS 776
            ++S
Sbjct: 1474 LTS 1476


>gi|283850550|ref|ZP_06367838.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574121|gb|EFC22093.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 536

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 121/243 (49%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ F+ ++S+E+R+PL  I+G   LL+T+     + +Q +Y+    
Sbjct: 146 LQKAVEEAEAANRAKSDFLANMSHEIRTPLNGILGMLQLLQTT---DADPEQREYITNAI 202

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  L  L+ DILDL+ ++AG + +  +          V ++         + +  + D
Sbjct: 203 KSSQRLTRLLADILDLSRIEAGRLPIVETAFEFKSQQEAVIETFDQAARGKGLALDFLVD 262

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDF--IFSVKNNGS 728
            ++  + + D  RL QI   ++ NA+ FS+ G   +       RD+G    +F+V + G 
Sbjct: 263 DRMPAALIGDETRLRQILFNLVGNAVKFSAYGRVAVTATPMHLRDDGSLRVLFTVTDTGI 322

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP+ +   +F  F  V  A+  + +G GLGL+IV   ++L GG + I S++   T I  
Sbjct: 323 GIPDHLLADIFEPFSQVEGAYSRRFQGAGLGLAIVRRLVSLLGGELDIDSTEGRGTAIYL 382

Query: 787 RIP 789
            +P
Sbjct: 383 TLP 385


>gi|218442122|ref|YP_002380451.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174850|gb|ACK73583.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 757

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 15/232 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGF--TDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVN 625
           K+ F+ ++S+EL +PLT +IG   T L  + +  SL+  KQ +Y+E I A+   L++L+N
Sbjct: 381 KSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQKKYIESIQANGKKLMDLIN 440

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLG----S 679
           DILD +++ +G    NY   +    L  V  ++     E   +  I+++ D ++      
Sbjct: 441 DILDYSSLTSG----NYQLRIREFSLYSVASAVMGDFQEEAQKKSIELVLDFQVKKEEIK 496

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F AD  R+ QI S +++NA+ F+ +G  V L+  R+     F +++ G  I +D    +F
Sbjct: 497 FYADPDRVQQIISHLMNNAIKFTPEGGRVTLRIWREKNQVFFQIEDTGIGITQDQLPLLF 556

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F       QR   G GLGL++ +  + LH G + + S+    +    R+P
Sbjct: 557 EKFQQLESSRQRTHGGTGLGLALTKQLVELHRGTIEVESTPHEGSLFTVRLP 608


>gi|126658538|ref|ZP_01729685.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126620125|gb|EAZ90847.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 746

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 127/242 (52%), Gaps = 19/242 (7%)

Query: 549 VRAERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ++ ++  TE+ E  +K    A++ K+ F+ ++S+ELR+PL  I+G+  +L+ +   +L  
Sbjct: 271 LQEKQEYTEQLEKAKKMADEANQAKSDFLSNISHELRTPLNGILGYAQILERN--SNLTP 328

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q+  +  I  S   LL L+ND+LDL+ ++A  + L  + I  +  LN V + I TK  +
Sbjct: 329 LQTDGLRIIHNSGNHLLTLINDLLDLSKIEARKLDLYPTDIDFHTFLNTVVEMIHTKARQ 388

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NG 717
            +I +  + D  L   V  D +RL QI   +L N + F+ +G  VI K          N 
Sbjct: 389 KDIVLVYLPDPNLPKAVQVDEKRLRQILLNLLGNGVKFTDQGK-VIFKVQVTPLSLTINQ 447

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNA-HRGQRRGVGLGLSIVESFINLHGGHVSI 774
            F F + + G  I E+  ++VF  F  V N  HR +  G GLGL+I +  I L GG + +
Sbjct: 448 TFRFEIIDTGVGINEEYLETVFKPFEQVGNVQHRSE--GTGLGLAISKQLIELMGGELKV 505

Query: 775 SS 776
            S
Sbjct: 506 ES 507


>gi|225375400|ref|ZP_03752621.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
           16841]
 gi|225212736|gb|EEG95090.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
           16841]
          Length = 954

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + EKNE L        +A++ K+ F+  +S+E+R+P+  I+G T++ K  +      K  
Sbjct: 546 IAEKNEQLLEAVDQANRANQAKSDFLARMSHEIRTPMNAIVGLTEIAKHYEDDP--KKIE 603

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y++ I  SS +LLN++NDILD+++++   MK+      L+++L  V      +  +  I
Sbjct: 604 DYLDKIDVSSKVLLNIINDILDMSSIENKKMKIAKEPFDLHEILMSVCTIYEPQCRQKGI 663

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFIF 721
             +V  +    ++ + D  R+ QI   ++SNA  F+S G  + +K        +   F F
Sbjct: 664 VFEVQDEEVTHTYLIGDGLRVNQILLNLVSNAYKFTSSGGKITIKVKELYVKEEKAYFNF 723

Query: 722 SVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  + E+M   +F  F   +A   Q+  G GLGLSI ++F+ L  G +S+ S   
Sbjct: 724 LVEDTGEGMSEEMQTRLFQPFEQESATTAQKHGGSGLGLSIAKNFVELMSGSISVKSKKG 783

Query: 780 GVTTINCRIP 789
             TT    IP
Sbjct: 784 EGTTFVVSIP 793


>gi|163852923|ref|YP_001640966.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163664528|gb|ABY31895.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 932

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  ++  +A+  K+ F+  +S+E+R+P+  ++   +LL ++ L     +Q +Y + I+
Sbjct: 277 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL---PPRQQRYAQVIA 333

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD A V+AG +++    +   D+ + V    A +     + +    D
Sbjct: 334 RSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSAGLDLAAQID 393

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF--SVKNNGSSI 730
           G +  S + D  RL Q+    +SNA+ F++ G  ++ ++   ++   +   +V + G  I
Sbjct: 394 GDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEHESSGPVLRIAVSDTGIGI 453

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+D    +F  F        RR  G GLGLSI E  I   GG V + S     +T   RI
Sbjct: 454 PQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESRLGEGSTFWARI 513

Query: 789 P 789
           P
Sbjct: 514 P 514


>gi|127514716|ref|YP_001095913.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126640011|gb|ABO25654.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1042

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 10/233 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL+E  E    A + K  F+  +S+E+R+P+  +IG   LL  ++L  +   Q +YV+  
Sbjct: 393 ALSEAREKAEVAAKTKEDFLACMSHEIRTPMNGVIGILGLLGETQLSPM---QKRYVDVA 449

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
           SAS+  LL+L+NDILD + +++G  ++      L +LL+   QS++ K+ E ++ + V I
Sbjct: 450 SASADSLLSLLNDILDFSKIESGKFEIEAIEFDLVELLDLFVQSVSLKLEERHLPLFVDI 509

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFS--VKNNGS 728
           +  +    V D  RL QI   ++ NA+ F+ +G   +  + R  ++G+ + S  V++ G 
Sbjct: 510 TQLQYRYVVGDPSRLRQILVNLVGNAIKFTEEGWIALRLSNRLSESGEVLLSCEVEDTGI 569

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            I ++    +FN F+       R   G GLGLSI +    L  G + + S  E
Sbjct: 570 GIAKEKLAMLFNPFIQVDSSTTRMFGGTGLGLSIAKRLCELMQGEIKVRSQQE 622


>gi|322418617|ref|YP_004197840.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125004|gb|ADW12564.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1224

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++TF ++++  RAE  L    EA   A   K+ F+ ++S+E+R+P+   +G   LLK + 
Sbjct: 601 VVTFFDISERKRAEEELRRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLKQT- 659

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q +Y+E   ++S +LL ++NDILD +  +AG M L      L+ +L+++    
Sbjct: 660 --GLSDQQKEYLEKAQSASDLLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDLDNVA 717

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAA 713
           +  + E  I     + +G     V D  RL Q+   +  NA+ F+ KG       +L   
Sbjct: 718 SAILGEKEIEFGAYVGEGVPEVLVGDPLRLGQVLLNLAGNAIKFTEKGKVEVEIALLALE 777

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             +    FSV + G  +  +  +++F  F    +   RR  G GLGL+I    + L GG 
Sbjct: 778 EKDATLRFSVTDTGIGMDAEQQEALFTPFTQADNSTTRRYGGTGLGLAICRELVQLMGGQ 837

Query: 772 VSISS 776
           + + S
Sbjct: 838 MWVES 842


>gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035545|gb|ABF62403.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 756

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT +   ER L E   A  +   IK  F+  +S+E R+P+  +IG   +L+ +    L+
Sbjct: 354 DVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMAQMLQAT---DLS 410

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  Y + I  SS  LL L+ND+LDL+ ++A  + L      L+  + ++ + ++ +  
Sbjct: 411 EDQRLYTDTILGSSRALLALINDVLDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSGQAD 470

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720
           E ++ + V  D  +  +V  D +RL QI   +L NA+ F++ GS  I       GD +  
Sbjct: 471 EKHLELSVEIDPDVPVWVTGDDRRLRQILVNLLGNAVKFTTSGSIFIRLRGVVTGDQVAL 530

Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              V++ G  IP D  + +F RF    NA   +  G GLGLSI        GG + ++S
Sbjct: 531 KIEVEDTGIGIPADKLEKIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDIDVTS 589


>gi|269960101|ref|ZP_06174478.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835400|gb|EEZ89482.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 639

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  +    A+  K+ F+  +S+E+R+P+  IIG   LL  +KL   + +Q  +V  I+
Sbjct: 230 IEEARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTKL---DEQQKDFVSIIN 286

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS  L+ +++DILD + ++AG ++L  +T  L DLL+EV +    K  +  +++    D
Sbjct: 287 SSSNSLMVIIDDILDFSKIEAGKIELETATYNLLDLLHEVGRLHTVKAQQKGLQLVCDID 346

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSS 729
            +L S V  D  RL Q+ S +LSNA+ F+ +G   ++ +  +  D I    F V ++G  
Sbjct: 347 AQLPSEVEGDVGRLKQVLSNLLSNAVKFTERGHVKLMVSQVNREDDIASVHFRVVDSGIG 406

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I ++  ++VF +F        R+  G GLGL+I  S + + GG + ++S
Sbjct: 407 IAKENQQAVFEKFQQADGSTTRKYGGTGLGLAICSSLVEVMGGEIRLTS 455


>gi|307592363|ref|YP_003899954.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986008|gb|ADN17888.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1262

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 7/231 (3%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            K   +K+ F+  VS+ELR+PLT++     LL    +   + +  + +E  +     L+ L
Sbjct: 1030 KLARMKDEFISVVSHELRTPLTSLQAALSLLYEKIIDPTSDEGQETIEIATEGVNRLVRL 1089

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            VNDILDL  + +G ++L       + ++      I     E  I IK  S+ +   F  D
Sbjct: 1090 VNDILDLERLSSGKIRLEKQFCQTDGVILAALDQIKEIAKEAQIIIK--SEYENFFFWCD 1147

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFN 740
              RL+QI   +L+NA+ FS + S + LK  + N      +FS+ + G  IP D  +S+F+
Sbjct: 1148 SDRLVQILINLLNNAIKFSPQNSIIELKVQQQNSPMPSLLFSISDQGRGIPSDKLESIFD 1207

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  +    + G GLGL+I  S +  HGG + ++S     +T    IP
Sbjct: 1208 RFGQVDASDSRAKGGTGLGLAICRSIVTQHGGEIWVNSKLGQGSTFYFTIP 1258


>gi|186474903|ref|YP_001856373.1| histidine kinase [Burkholderia phymatum STM815]
 gi|184191362|gb|ACC69327.1| histidine kinase [Burkholderia phymatum STM815]
          Length = 482

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 5/239 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+ + LR+AD +K+ F+ ++S+ELR+PL++I   ++LL     G L+ +Q + V  I 
Sbjct: 220 LDERADELRRADAMKSRFLSNMSHELRTPLSSIRALSNLLLNRLDGDLSGEQERQVLLIR 279

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +VND+LDLA ++AG   +         L   ++  +   + +  +++     
Sbjct: 280 KSAEDLSEIVNDLLDLAKIEAGRTDVTPVWFKAAGLFAALRAMLTPLLTDPAVKLIFEDT 339

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
             L S  AD  +L QI    +SNA+ F+ +G   +      +G  + F+V + G  I E+
Sbjct: 340 HGLPSIFADEAKLTQILRNFVSNALKFTERGEIRVGAHLEPDGQHVTFAVVDTGIGIAEE 399

Query: 734 MCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F  F  V N H  QR +G GLGL +      L GGH  + S     +T    +P
Sbjct: 400 HQQVIFEEFGQVQN-HLQQRVKGTGLGLPLCRKLAALLGGHAGVDSKPGVGSTFYLTLP 457


>gi|83954261|ref|ZP_00962981.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Sulfitobacter sp. NAS-14.1]
 gi|83841298|gb|EAP80468.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Sulfitobacter sp. NAS-14.1]
          Length = 515

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 133/279 (47%), Gaps = 31/279 (11%)

Query: 527 EYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI-------KNSFVQHVS 577
           EY ++ L      T +T   +       R   E  E LRKA +        K+ F+  +S
Sbjct: 211 EYKLLALVIAGTATTITLGGLFTYFIENRTRMESIEELRKARDAAEGASRAKSEFMSVLS 270

Query: 578 YELRSPLTNIIGFTDLLK----------------TSKLGSLNSKQSQ-YVEYISASSTIL 620
           +ELR+PLT +IG+   L                 T K  ++   Q++ Y + +  +   L
Sbjct: 271 HELRTPLTIVIGYAGFLTKLKTTTTAKLSPGEPITEKHYNIIGDQAELYGQRVKFAGNHL 330

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L ++NDILD  +++   +KL  +T     LL +V+          ++ +  I DG L   
Sbjct: 331 LTIINDILDYTSIELNDIKLAKTTFPTRALLAQVEDQFQGMAQGKDVTLH-IPDGSL-DV 388

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +ADR R LQI   ++ NA+ FS KG  + L+A  D G F F V++NG  + +   +S+F 
Sbjct: 389 IADRGRCLQILINLVGNALKFS-KGKDIFLRAEVDGGGFRFEVEDNGVGMEQKDLESIFQ 447

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F  + +A      G GLGL+I +     HGG +S+SS+
Sbjct: 448 AFTQIESADNRSEGGTGLGLAICKKLALAHGGDISVSST 486


>gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
          Length = 945

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 129/250 (51%), Gaps = 11/250 (4%)

Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N Q ++   N +T+   AE+ L +  E    A+  K+ F+ ++S+E+R+P+  I GF +L
Sbjct: 288 NIQYLICTANDITEQRLAEKELYKAKEQAEAANTAKSRFLANMSHEIRTPMNGIFGFLEL 347

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ +   +L+ +Q +++    ++S ILL+++NDILD + ++A  + +      L + + +
Sbjct: 348 LQAT---NLSLEQKEFIREAKSASEILLHIINDILDFSKIEAKKLTMEKIKFNLRNSIED 404

Query: 654 VKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
               +A K  E N+ +  +I+       + D  RL Q+ + ++SNA+ F+SKG   +   
Sbjct: 405 AVSLLAPKAAEKNLELYTMINPNVPEEVIGDPSRLRQVLNNLISNAVKFTSKGEISVKVD 464

Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            LK         F VK+ G  I ++   ++F  F        R+  G GLGL+I    + 
Sbjct: 465 CLKEENKIAFLNFEVKDTGIGIRKEHINTIFKSFSQADASTTRKYGGTGLGLAISSELVK 524

Query: 767 LHGGHVSISS 776
           + GG + + S
Sbjct: 525 MMGGKIQVES 534


>gi|255532428|ref|YP_003092800.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255345412|gb|ACU04738.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 543

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 28/268 (10%)

Query: 532 PLP-NAQTMLTFVNVTDSVRAERALTEKNEALR--------------KADEIKNSFVQHV 576
           P P N   +L+  ++T    A+ AL E  E L               KA + K+ F+  +
Sbjct: 116 PEPENYILVLSIQDITAQKLADFALKEAKEQLELSNAALKKAISIAEKASKTKSDFLSVM 175

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  IIG  +LLK +        Q +Y+  +  S+  L+ L+NDILDL  ++  
Sbjct: 176 SHEIRTPLNGIIGIANLLKLNH----TMDQKEYIGNLIFSADHLMQLINDILDLTKMENE 231

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKIL 695
            ++L  + I L  L+  +K    +      I++K  I D      +AD  RL Q+ + ++
Sbjct: 232 KLELIVAEIDLFRLIKNIKNQFKSLAEAKGIKLKSFIDDDIPQRLIADPVRLSQMLNNLI 291

Query: 696 SNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF---VSNAHR 748
           SNA+ F+ +G   +   L     N  F+ F+VK+ G  IP ++ +SVF  F     +AHR
Sbjct: 292 SNAIKFTDRGEVTLLIKLLTVESNRAFLHFAVKDTGMGIPPELQESVFESFKQIQQSAHR 351

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  G GLGL+I +    LH   V + S
Sbjct: 352 -EHSGTGLGLTITQKLAELHNSRVILKS 378


>gi|124009209|ref|ZP_01693890.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
 gi|123985194|gb|EAY25128.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
          Length = 1055

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 11/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T    A   L E  +    A++ K+ F+ ++S+E+R+PL  +IGF DLL+ SK   LN
Sbjct: 409 DITHEKLASEKLKEAKKQADTANKAKSEFLANMSHEIRTPLNGVIGFADLLQRSK---LN 465

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S+T LL+++ +ILD + ++AG + L  +   L +L  ++   I  + H
Sbjct: 466 ETQQKYISTIYQSATSLLDIITNILDFSKIEAGKLDLMVAKTDLLNLSQQIINLIRYQAH 525

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719
           + ++ + +  D  +  FV  D  ++ Q+   +LSNA  F+++G     + L+   D    
Sbjct: 526 KKDLEVLLHIDNDIPRFVWIDEVKMRQVLVNLLSNATKFTTEGEIELKIDLQERLDEEMV 585

Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           +  F+V++ G  I  +    +F  F        RR  G GLGLSI    ++L G  + + 
Sbjct: 586 VLRFAVRDTGIGIAPENKGKIFEAFSQEDSSTTRRFGGTGLGLSISNKLLDLMGSRLLVE 645

Query: 776 S 776
           S
Sbjct: 646 S 646


>gi|301309870|ref|ZP_07215809.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300831444|gb|EFK62075.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 622

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 132/250 (52%), Gaps = 8/250 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ +    E +L E       AD++K+ ++  +S+E+R+PL  I GF++L+        +
Sbjct: 380 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 436

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y  + +++L++ +  S   ++ 
Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 495

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +++ +        F  D  RLLQ+ + +++NA+  + +GS  +    + +    F V
Sbjct: 496 PGGVKLVLEKGADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDNQLRFYV 555

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I +D  K VF RFV  N +     G+GLGL+I +  +   GG + ++S     +
Sbjct: 556 RDTGIGIDKDKLKDVFGRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 612

Query: 783 TINCRIPSKE 792
             +  +PS E
Sbjct: 613 EFSFILPSHE 622


>gi|261211774|ref|ZP_05926061.1| signal transduction histidine kinase [Vibrio sp. RC341]
 gi|260839124|gb|EEX65756.1| signal transduction histidine kinase [Vibrio sp. RC341]
          Length = 1182

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+ + Q  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 620 PINHGQYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 679

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S ++Q +   + SS   L L VNDILD + ++A  +KL+ +T  L D
Sbjct: 680 MEILAS----RLKSSENQLLLTNAISSAERLKLHVNDILDFSKIEAEQLKLDIATYNLAD 735

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +    +   N +   VI     L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 736 ELGPLLRGFEARAQLNQVEFDVIWLPNPLLVVDFDALRFNQIVTNLLSNAIKFTEQGR-V 794

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           ++K           V+++G  + +    S+F  FV       RR  G GLG+SIV + I 
Sbjct: 795 VVKVDVTPEQLNLVVEDSGCGMTQQQIDSIFVPFVQADSTITRRFGGTGLGMSIVSNLIE 854

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + I+S     T ++  IP
Sbjct: 855 LMQGRIDITSQFGQGTQVSVSIP 877


>gi|90419743|ref|ZP_01227652.1| putative sensor histidine kinase, response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335784|gb|EAS49532.1| putative sensor histidine kinase, response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 919

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 129/245 (52%), Gaps = 14/245 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T ++R     + K+EA R A+  K+ F+  VS+E+R+P+  ++   ++L  + +    S+
Sbjct: 262 TVTLRTAEMRSAKDEAER-ANAAKSEFLATVSHEIRTPMNGMLVMAEMLSAAPI---PSR 317

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             ++ E I  S   LLN++NDILD++ ++AG + L    + ++ L+ +V    A K  E 
Sbjct: 318 YLRHAEIILRSGRGLLNILNDILDMSKIEAGRLDLEEIPLSVDTLVEDVASLFAEKAREK 377

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGD--- 718
           ++ I  + D  + +  + D  R+ Q+ + +++NA+ F+  G   I     AA D G    
Sbjct: 378 SLSIATMIDVDVPAEVIGDPVRISQVLTNLVNNALKFTETGGVTIAVECVAAEDAGGPPM 437

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F++++ G  IP D    +F RF        R+  G GLGL+I +  +   GG V + +
Sbjct: 438 LGFTIRDTGIGIPADKLGKLFGRFTQADQTITRKFGGTGLGLAISKQLVEAMGGTVRV-T 496

Query: 777 SDEGV 781
           S+EGV
Sbjct: 497 SEEGV 501


>gi|13476354|ref|NP_107924.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
 gi|14027115|dbj|BAB54069.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
          Length = 541

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K  F+  VS+ELR+PL  IIGF+D+L     G+  + +Q +YV  +  S   LL +V  I
Sbjct: 284 KGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVTLVRDSGQHLLAVVTSI 343

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ +++G    +       + ++  +  +  +    NI ++       G   ADR+ +
Sbjct: 344 LDVSRIESGAYTADPEPFRFMEAVDMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAV 403

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+   ++SNA+ F+  G  V++ A R      F V++ G  I E+   ++   F  + N
Sbjct: 404 QQMLINLVSNAIKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGIAEEDFANLGKPFTQIQN 463

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  +  G GLGLS+V+  + LH G +SI S     TT+   +P
Sbjct: 464 DYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 507


>gi|65320510|ref|ZP_00393469.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 448

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E NI I+   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNIAIEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|264678130|ref|YP_003278037.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
 gi|262208643|gb|ACY32741.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
          Length = 841

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 131/257 (50%), Gaps = 14/257 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           FV+VT+   AE A  E  +A  +A  +K+ FV ++S+ELR+PL +IIGF      S+LG 
Sbjct: 581 FVDVTEFRIAELATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGF------SELGQ 634

Query: 602 LNSKQS----QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           L S+ +    +    I A+   +L LVND+LD+A +++ +  ++   + L  L+  V + 
Sbjct: 635 LRSRATPKLGEMFYDIHAAGQRMLALVNDLLDVAKLESPVGSIHTEKVDLRGLIRPVARE 694

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
           +   +H+  I +++ + D  L +  AD  R  Q+   +L+NA+ FS     + ++   D 
Sbjct: 695 LEPLLHQKQIDLRLRLEDAPLIA-KADPVRFQQVIRNMLANAIKFSLPHGRIDVEGHFDG 753

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            G+      + G  +P      +F  FV S+  +    G GLGL+I    I+   G ++ 
Sbjct: 754 QGNICVDFLDQGPGVPTQELDKIFQPFVQSSKTKDGSGGTGLGLAICRKIIDAMDGTITA 813

Query: 775 SSSDEGVTTINCRIPSK 791
           ++  +G       +P++
Sbjct: 814 ANRPDGGAVFRITLPTR 830


>gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 648

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           T V VT  V   R   ++ +  R    +ADE+K  F+  VS+ELR+PL  IIGF+D+L  
Sbjct: 321 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGG 380

Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               SL+ ++S +Y   I+ S   LL++VN +LD++ +  G        + +  L+    
Sbjct: 381 EGAMSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCC 440

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +  K   + I +         + VAD +   Q+   ++SNA+ F+ +G  V +   R 
Sbjct: 441 DLMRLKADASGIALTSAPVPASCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 500

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  V ++G  I E     + + F  V   +     G GLGLS+V     LHGG VS
Sbjct: 501 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 560

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    T +   +P
Sbjct: 561 VESAPGKGTAVTVTLP 576


>gi|146309198|ref|YP_001189663.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577399|gb|ABP86931.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 783

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 5/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD   AE AL    E    A   K+ F+  +S+ELR+PL +I+GF  LL+  +     
Sbjct: 380 DITDRRNAEAALRTAREEAENASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDR--GTP 437

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q+Q V +I  +   LL L+N++LD+A +++G + L+   + L  LL EV   ++ +  
Sbjct: 438 AQQAQ-VRHILRAGRHLLGLINEVLDIARIESGRLALSPEPLPLRPLLQEVSLLLSPQAD 496

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             +IR+++  +      V ADRQRL+Q+   +LSNA+ ++  G  V ++   D+     S
Sbjct: 497 SADIRLRLPEELPAELCVQADRQRLVQVLLNLLSNAIKYNHPGGHVEVRVQADSDTVTLS 556

Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V +NG  I  +  + +F  F    A   +  G GLGL++ +S +    G + + S+    
Sbjct: 557 VIDNGPGIAAEDLERLFIPFERLGAAASEVEGTGLGLALSKSLLEQMDGSLGVHSTPGEG 616

Query: 782 TTINCRIPSKE 792
           +T +  +P  +
Sbjct: 617 STFSLTLPRAQ 627


>gi|326692152|ref|ZP_08229157.1| Signal transduction histidine kinase [Leuconostoc argentinum KCTC
           3773]
          Length = 370

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 141/274 (51%), Gaps = 10/274 (3%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK-NEALRKADEIKNSFVQHVSYEL 580
           SD ++++  +  P  Q +   ++VT+++  +   T+K  E  R+++  K+  + ++S++L
Sbjct: 94  SDRLIDWQAMYAPKTQAL---IDVTNTIAKQ---TQKIREEERESERSKDEMITNISHDL 147

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT IIG+  L++ +      + +++Y+    + S  +  LV D+ + +   A    L
Sbjct: 148 RTPLTAIIGYLGLVEMNGEQLSEADRAKYIHTAYSKSNQMKVLVEDLFEFSKTQAHDAVL 207

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N +T+ L+DL  ++  S   +  E+N+ +  I   +L    AD  +L +    ++SNA  
Sbjct: 208 NLTTLSLSDLFAQLIASYEIEAQEHNVALTQIVKPELIVLEADSDKLARALMNLISNAFK 267

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           +    + + L A     D    V N+G  IP +    +F+RF  V ++   Q  G GLGL
Sbjct: 268 YGDGATFIKLTAQVKGTDVEIRVINDGIKIPSEALTDIFDRFYRVESSRNSQTGGTGLGL 327

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +IV+  I  H G V  +S DE +TT    +P ++
Sbjct: 328 AIVKGIIAQHHGQVRATSDDE-LTTFIVTLPLRQ 360


>gi|300868651|ref|ZP_07113263.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333345|emb|CBN58455.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 663

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 25/250 (10%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D + AE  L E  E    A+E K+ F+ ++S+ELRSPL  I+GF+ ++  SK  +L S+ 
Sbjct: 169 DELNAE--LAEAKEKAEVANEAKSIFLANMSHELRSPLNAILGFSQIMTRSK--TLPSEH 224

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  IS S   LL+L+N++LDL+ ++AG   LN     L  LL++++     K  +  
Sbjct: 225 IENVGIISRSGEHLLSLINNVLDLSKIEAGHTTLNEKNFDLYRLLDDLEDMFHLKADDRR 284

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----- 720
           +++       +  +V  D  +L QI   +L+NA+ F+  G  V ++   D G  +     
Sbjct: 285 LQLIFERSPDVPRYVRTDEVKLRQILINLLNNALKFTQVGG-VSVRVVTDGGSLVTGTAT 343

Query: 721 -------------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766
                        F V+++G  I  +   S+F  FV +   +  + G GLGL I   F+ 
Sbjct: 344 KQITDESEKTMLRFEVEDSGPGIAPEELDSLFEVFVQTQTGKEAQEGTGLGLPISRKFVQ 403

Query: 767 LHGGHVSISS 776
           L GG +++SS
Sbjct: 404 LMGGEIAVSS 413


>gi|156934002|ref|YP_001437918.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532256|gb|ABU77082.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894]
          Length = 893

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 118/212 (55%), Gaps = 7/212 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  I+G T L   +    LNS+Q +Y+  + +S+  LL++++DIL
Sbjct: 269 KSAFLANMSHEIRTPMNGILGMTQLCLDT---DLNSEQREYLTLVMSSAQSLLHIIDDIL 325

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + ++AG + L+   + L   +  + + +     E  I + V  D ++  +   D  RL
Sbjct: 326 DFSKIEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDERVPQTLRVDVVRL 385

Query: 688 LQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+ + +LSNA+ F+ +G  ++  A     G++ F V+++G  IP +  + +F  F    
Sbjct: 386 RQVLTNLLSNALKFTHQGEILLAVAPGPQPGEWRFRVRDSGIGIPPEKQQVIFEAFSQAD 445

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGL+I    + + GG ++++S
Sbjct: 446 TSTTRRYGGTGLGLTISARLVAMMGGLLTVAS 477


>gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1183

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 6/240 (2%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           ++  ++T     E AL E  +    A + K+ F+  +S+E+R+P+  ++    LL+   L
Sbjct: 504 VSTADITKRKEQEDALAEAKQTAEDASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPL 563

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q +    I  S+T LL ++NDILD + +++G ++L    + L+D++  V + +A
Sbjct: 564 AQ---EQKEMARVIRDSATALLTIINDILDFSKIESGKLELEIIEMSLSDVIESVAELLA 620

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +  E  I +    D  L   F+ D  RL QI + +  NA+ F+ KG   I   A  +G 
Sbjct: 621 PRASEKGIGLMTFIDPALPDLFLGDATRLRQIVTNLAGNAVKFTDKGYVRISAEAAADGH 680

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F++ + G  + ++    +F  F        RR  G GLGLSI    + +  G + + S
Sbjct: 681 VRFTISDTGIGLNDEQQAKLFEPFSQADASISRRYGGTGLGLSICRRLVAMMDGEIGVDS 740


>gi|15131529|emb|CAC48384.1| ethylene receptor [Fragaria x ananassa]
          Length = 741

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 135/264 (51%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESRRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+ +T  L+ +  EV   + 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSVFIEVHNLVK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + + +     L  + + D +RLLQI   ++ NA+ FS +GS  I       ++
Sbjct: 432 PVASVKKLSVTLNLAADLPVYAIGDERRLLQIILNVVGNAVKFSKEGSISITAFVAKSES 491

Query: 713 ARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD    DF              VK++GS I P+D+ K +F +F  N     R   G GL
Sbjct: 492 LRDFRAADFFPVQSDNHFYLRVQVKDSGSGINPQDLPK-LFTKFAQNQSLATRNSGGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 551 GLAICKRFVNLMEGHIWIESDGLG 574


>gi|73538800|ref|YP_299167.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72122137|gb|AAZ64323.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 660

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 143/281 (50%), Gaps = 25/281 (8%)

Query: 526 LEYSIIPLPNAQTMLTFV-NVTDSVRAERA---LTEKNEALRKADE----IKNSFVQHVS 577
           LE+SI  +  +   +  V N+TD V  ER    L E+ +A R A E    +K+ F+  +S
Sbjct: 236 LEWSISAVLQSGVKVAVVSNITDRVNLERQREQLIEREQAARAAMERLNRMKDDFIAILS 295

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLNLVNDILDLATVDAG 636
           +ELRSPL  I  +T +L       +NS + +  +  +  + TI   L+ D++D++ ++ G
Sbjct: 296 HELRSPLNVISIWTHVLNQH----INSDEGRRGLAAVERNITIQRRLIADLVDVSMLNVG 351

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIF 691
            +KL    +   +L+    +S+  +  E N+ +      V++D        D  R  QI 
Sbjct: 352 KLKLELERVNPAELVRVAVESMQRQAQERNVTLVTEMPPVLADAAW----LDPSRFEQIL 407

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
             ++SNA+ FS +G  V ++ A + G     V ++G  I  +    +F+RF    +A+R 
Sbjct: 408 WNLVSNAIKFSPEGGIVRIEVASNGGALRVRVIDHGRGITAEFLPLLFDRFTQSEDANRR 467

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           Q  G+GLGL+IV   + +HGG V  SS+  G+ +T    IP
Sbjct: 468 QHGGLGLGLAIVRQLVEMHGGTVQASSAGVGLGSTFEVTIP 508


>gi|298241825|ref|ZP_06965632.1| signal transduction histidine kinase with CheB and CheR activity
            [Ktedonobacter racemifer DSM 44963]
 gi|297554879|gb|EFH88743.1| signal transduction histidine kinase with CheB and CheR activity
            [Ktedonobacter racemifer DSM 44963]
          Length = 1103

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 17/230 (7%)

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            A ++ +  K +F+  VS+EL++PLT+  GF  LL+     + +   +  +E +  S   L
Sbjct: 874  ARKELERQKETFLGMVSHELKTPLTSAKGFVQLLQRRLSKAGDEHMAPELEQVDRSLEKL 933

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQSIATKMH----ENNIRIKVISDG 675
              L++ +LD   ++ G++ ++ S   ++DL+ E VK+      H    E+ I+I+     
Sbjct: 934  SRLISSLLDANALETGMLSIHASVFAVDDLVREMVKEQKQLWPHRLFLESTIQIRAY--- 990

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  ADR+R  Q+   +LSNA+ +S     V +  + D+     SV+N G  IP+D  
Sbjct: 991  ------ADRERSGQVLQNLLSNALKYSPVADPVWVSVSVDDDMIRLSVQNRGKGIPQDQH 1044

Query: 736  KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
              +F RFV  A   Q   +G+GLGL I    +   GG + + S+ +EGVT
Sbjct: 1045 ARIFERFVRGAQPEQNTVKGMGLGLYIAAQIVTQQGGRIWVESTLNEGVT 1094


>gi|281356192|ref|ZP_06242685.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317561|gb|EFB01582.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1318

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 11/243 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            V+VT     +R   E  E  R+A + K++F+  +S+E+R+PL +IIGF++LL+ +   S 
Sbjct: 916  VDVTRQKELQRRTAEALELTRQAYQTKSNFLAMMSHEIRTPLNSIIGFSELLQATSPDS- 974

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              +   Y   I+ +   LL L+ND+L+++  +A ++++    +  N LL E+        
Sbjct: 975  -EELHDYAANINTAGQTLLQLINDVLEISRFEADLVEIPLEWVDFNRLLAEIGSIFKHMA 1033

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGD 718
             +  +  ++ +  +L     +  RL QI   ++ NA+ F+ KG   +    R     +G 
Sbjct: 1034 RKKGLDFRIEAPAELPEIYLNDARLRQILLNLVGNAVKFTEKGGISVSADFRATDSGHGR 1093

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
               +V++ G  I   +   +F+ FV     A RG R   G GLGLSIV+  ++  GG V+
Sbjct: 1094 LEITVRDTGIGIDPGLHSRIFDPFVQADEGAVRGNRTTNGTGLGLSIVKRLLDKMGGSVT 1153

Query: 774  ISS 776
            + S
Sbjct: 1154 LES 1156


>gi|259416564|ref|ZP_05740484.1| sensor histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348003|gb|EEW59780.1| sensor histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 896

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 127/247 (51%), Gaps = 7/247 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L + N+ L +  E K++F+  VS+ELR+P+T++  F+++L+    G   ++Q +Y
Sbjct: 651 RTALQLRDTNQKLTQLSEQKDAFLSQVSHELRTPMTSVRAFSEILRDEP-GLTAAEQHKY 709

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I   +  L  L+ND+LDL+ +++G + LN ST  L D+L+    S A    +  ++I
Sbjct: 710 ASIIHDEALRLTRLLNDLLDLSVLESGAVSLNVSTRRLGDVLDHALSS-ALAGADGPLQI 768

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
               D +      D  RL Q+F  +++NA  + +     +    R NGD +   + +NG+
Sbjct: 769 IRDRDREAVEVETDVDRLSQVFINLIANAQKYCTATDPELRIHVRSNGDRVEVDLADNGA 828

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT---TIN 785
            IP D  + +F +F S     +  G GLGL+I +  +   GG +S  S  EG     T+ 
Sbjct: 829 GIPVDFHEMIFEKF-SRVTPERAGGAGLGLAICKEIMRKLGGDISFLSEQEGAAFRVTLP 887

Query: 786 CRIPSKE 792
            R+  +E
Sbjct: 888 IRLKIEE 894


>gi|262196998|ref|YP_003268207.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Haliangium ochraceum DSM 14365]
 gi|262080345|gb|ACY16314.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Haliangium ochraceum DSM 14365]
          Length = 1131

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 116/248 (46%), Gaps = 39/248 (15%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE  E  R+  E    FV  VS+ELR+PLT+I G  D++ +   G +  KQ +Y++ 
Sbjct: 413 RDMTEAKELARRQSE----FVSVVSHELRTPLTSITGALDIVLSGYSGRVPDKQQRYLKM 468

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN------- 665
              S  +L  LV+D+LD A  D G M ++   +V++DL  EV      + HE        
Sbjct: 469 ARESCAVLNALVDDLLDTANADDGDMPVHLRPLVVDDLALEVMD----RYHEEAETKRIE 524

Query: 666 --------NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAAR 714
                   N+RI           V D  RL Q+ + +LSNA+ F++    V   I   A 
Sbjct: 525 IRLEREEENVRI-----------VGDGDRLSQVLTNLLSNAVKFTTVQGQVSIDIFGKAV 573

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            +     SV N+G  IP    + VF++F        R+  G GLGL I  + I  HGG +
Sbjct: 574 SDAFVCISVYNSGKPIPRAASERVFDKFEQLDDVTTRKVGGTGLGLPISRAIIEAHGGRI 633

Query: 773 SISSSDEG 780
            + S   G
Sbjct: 634 WLESLPTG 641


>gi|227894009|ref|ZP_04011814.1| sensor histidine kinase [Lactobacillus ultunensis DSM 16047]
 gi|227864210|gb|EEJ71631.1| sensor histidine kinase [Lactobacillus ultunensis DSM 16047]
          Length = 384

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++ K+  + +VS+++R+PLT+IIG+  LLK+         Q +Y+      +  + +
Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYINIAYTKAEQMKS 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ +  T+ +   KLN +++ +  +L +V      +  +  I I++ +  K  +  A
Sbjct: 206 LANDLFEYTTLKSTNTKLNLNSLHIYSMLEQVAAGFELEAEKKGIEIEIEARPKDLTIQA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++++ ++SNA  +    + + L A   N   +   V+NNG+ IP+D  K +F R
Sbjct: 266 DAEKLVRVYNNLISNAFKYGIGATKIKLIANLVNKREVELRVENNGAPIPKDSQKKIFER 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGLSI +S ++LH G +    SD+  T+   R+P
Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKSVVDLHHGTIR-CQSDKNWTSFIIRLP 374


>gi|119191658|ref|XP_001246435.1| conserved hypothetical protein [Coccidioides immitis RS]
          Length = 757

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 19/238 (7%)

Query: 549 VRAERALTEKNEA-------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           V+  R LTE+  A         +  ++K+ F+ ++S+E+R+P+  ++G   LL ++   +
Sbjct: 357 VKVVRDLTERKAAETRLIAAYEETSKLKSDFLANMSHEIRTPMNGVLGALSLLNST---A 413

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+  Q +Y   I  S+++LL L+NDILD + + +G   L      +  ++N V QS   +
Sbjct: 414 LSQNQREYATIIEESTSVLLRLINDILDYSKLSSGSFSLTTDVFSVESIVNSVIQSCPPR 473

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716
             E  I +K I D    S V  D  R  QI   ++ NA+ F+ KG     T   +  RD+
Sbjct: 474 NPE--IEVKSIIDPDFPSHVKGDPLRFRQILQNLVGNAVKFTDKGYIHVRTCFKEDERDD 531

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 V ++G  + ++   ++F  F  +A+   +R  G GLGLSI +S   L GG V
Sbjct: 532 YSVTVEVIDSGIGVADEAMNTLFAPFTRSANSATKRYQGTGLGLSICKSLAELMGGAV 589


>gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1079

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 19/266 (7%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLT-FV----NVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           L  +SVL   + P+ N Q  ++ FV    N+T+  +A +   E N A       K+ F+ 
Sbjct: 658 LYDESVL---VSPIKNDQGEISHFVALKENITELKKARKQAEEANRA-------KSEFLS 707

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+ELR+PL  I GF+ L+ +S+   LN K    VE I  +   LL L+N++LDLA ++
Sbjct: 708 RMSHELRTPLNAINGFSQLMLSSRKNPLNDKHRSMVEQIDGAGKHLLELINEVLDLARIE 767

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
           AG + L+   +    ++NE    + +   ++ +        +    V AD  R  Q+   
Sbjct: 768 AGKLSLSVEAVDPCHIINECLPLLHSLAEQHQVTFHSCCGEQTFPLVKADYTRTKQVLVN 827

Query: 694 ILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           +LSNA  ++  G   T+ ++A    G   F V +NG  I E+  K +F  F   A   + 
Sbjct: 828 LLSNAAKYNRPGGDVTIHVQANEPTGFLRFQVIDNGLGIAEEKQKQLFVPFARLAQDSEN 887

Query: 752 -RGVGLGLSIVESFINLHGGHVSISS 776
             G G+G++I +  +   GG +   S
Sbjct: 888 IEGTGIGMTITKQLVEAMGGQIDFES 913


>gi|317139763|ref|XP_001817748.2| sensor histidine kinase/response regulator [Aspergillus oryzae RIB40]
          Length = 2326

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 37/263 (14%)

Query: 552  ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL +  EA +KA                  + K+ F+ ++S++LR+P+  +IG ++LL
Sbjct: 1843 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1902

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +KL   + +Q +YVE I   +  LL L+NDILD + ++AG MK++   + + + ++EV
Sbjct: 1903 KATKL---DKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1959

Query: 655  KQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708
             +++     +  +       KV  D  +   + D  RL QIF  +LSN+  F+ KGS TV
Sbjct: 1960 VRALRYTHRDRGLETIEDLEKVPPDLVV---LGDPVRLHQIFMNLLSNSYKFTPKGSVTV 2016

Query: 709  ILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVE 762
              +  R+    I    SV + G  IPE+    +F  F S A     R   G GLGLSI +
Sbjct: 2017 RARVTREGKGRIRLECSVSDTGIGIPEEQKSRLFRPF-SQADSSTARSYGGSGLGLSICK 2075

Query: 763  SFI-NLHGGHVSISSSDEGVTTI 784
            + I ++ GG + + S+    TT+
Sbjct: 2076 AIIEDVLGGAIWLDSTPGVGTTV 2098


>gi|304412838|ref|ZP_07394438.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|304348801|gb|EFM13219.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
          Length = 964

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKA 565
           ++R  L  T +  ++  +E  ++P+     +L   F+ ++++   +E  L    E     
Sbjct: 279 NKRIELLATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELG 338

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +++K+ F+  +S+E+RSPL  I+G  +LL  SKL   N +Q  +      + + LLN +N
Sbjct: 339 NKVKSRFLATMSHEIRSPLNAILGGVELLLHSKL---NKEQRIHANITREAGSALLNTIN 395

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG M L  +    + L+ +V Q +  K ++  +++    D  +  + + DR
Sbjct: 396 DILDFSKIEAGQMVLESNEFEPDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDR 455

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIPEDMCKSVFN 740
           QRL Q+   ++ NA+ FS  G+  +     DN   +      V ++G  I E+    +F 
Sbjct: 456 QRLNQVIHNLVDNAIKFSVSGTITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFK 515

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
            F  V + H    +G GLGL+I    I + GG + + S  D+G
Sbjct: 516 EFSQVHDTHNTNYKGTGLGLAICRELITMMGGEIELESELDKG 558


>gi|295426128|ref|ZP_06818795.1| sensor histidine kinase [Lactobacillus amylolyticus DSM 11664]
 gi|295064164|gb|EFG55105.1| sensor histidine kinase [Lactobacillus amylolyticus DSM 11664]
          Length = 384

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+  + +VS+++R+PLT+IIG+  LLK+    +    Q +Y+      +  + +L N
Sbjct: 151 EQSKDELITNVSHDIRTPLTSIIGYLGLLKSG--NASQEDQQKYINIAFTKAEQMKSLAN 208

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+L+  T+ +   KLN  ++ +  +L +V+     +  +  I  ++ S  K  +  AD +
Sbjct: 209 DLLEYTTLKSNNTKLNLVSLPIYSMLEQVEAGFELEAEKKGITFEIASRPKDLTIKADPE 268

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF-- 742
           +L+++++ +++NA  + +  + + L A   N   +   V+NNG+ IP+   K +F RF  
Sbjct: 269 KLVRVYNNLINNAFKYGTGATKIKLIANLINKQTVELRVENNGAKIPKASLKKIFERFYR 328

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V  +   +  G GLGLSI +S ++LH G +    SD+  T+   R+P
Sbjct: 329 VETSRNTKTGGTGLGLSITKSVVDLHRGTIR-CVSDDNWTSFIIRLP 374


>gi|30248080|ref|NP_840150.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC
           19718]
 gi|30179965|emb|CAD83960.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC
           19718]
          Length = 1229

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 129/258 (50%), Gaps = 15/258 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ + V+  + L +       A++ K++F+  +S+E+R+P+  +IG  D+L  +   SL+
Sbjct: 540 DMREHVKIRQDLEQARRDAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLSQT---SLS 596

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S Q +  + I  S+ +LL ++ DILD + ++AG +++    I L  ++     ++     
Sbjct: 597 SYQKEMTDLIRESAFVLLEIIEDILDFSKIEAGRLEIEQRPISLEKVVERACGTLTHMAA 656

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFS---SKGSTVILKAA---RDN 716
              + + +  D  L   VA D  RL QI   +++NA+ FS   S+   VI+KA    R N
Sbjct: 657 SKEVELILFVDPALPKNVAGDALRLRQILINLINNAIKFSSGMSRPGCVIVKAVPADRAN 716

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           GD +   F V +NG  + +   + +F  F        RR  G GLGL+I    + L  G 
Sbjct: 717 GDVVTVLFQVIDNGIGMDDATRERLFTPFSQGDTSTTRRFGGTGLGLTICRRLVELMKGD 776

Query: 772 VSISSSDEGVTTINCRIP 789
           +++ S     +T   RIP
Sbjct: 777 ITVESQPGKGSTFKARIP 794


>gi|309791780|ref|ZP_07686268.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillochloris trichoides DG6]
 gi|308226186|gb|EFO79926.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillochloris trichoides DG6]
          Length = 396

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L+  N AL++ D +K+ F+  +S+ELR+PLT++IG+ +L     LG+L++ Q + +  
Sbjct: 154 RELSAANAALQELDTLKSQFLATLSHELRTPLTSLIGYIELFDRGMLGTLSTPQKEAMGV 213

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S TIL   +N++L    + +     +   I + DLL +       +  +  IR +V+
Sbjct: 214 MRRSCTILSQQLNNLLYFQELRS--RSFHLRPINMRDLLRQSLILFKERADQAGIRFEVV 271

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              ++   +AD   + Q+   ++ NA+ F+  G  V +    +    I  V++NG  IP 
Sbjct: 272 GS-EIAPILADTSGIEQLVRNLIDNAIKFTQAGGWVRVVFQDEPSRLIMRVEDNGIGIPS 330

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  + +F  F  V ++    + G GLGL+IV+  IN HGG +++ S
Sbjct: 331 EYHERIFLPFYRVDSSLASGQTGSGLGLAIVQHVINAHGGQITVRS 376


>gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
 gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
          Length = 1331

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 874

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +V++ ++ ERAL E  E    A+  K+ F+  +S+E+R+P+  I+G   LL   +   L
Sbjct: 351 ADVSERLQEERALIEAKEQAEAANMAKSRFLAVMSHEVRTPMNGILGMLGLLNDRR---L 407

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q +++     S+  +L L+NDILD + ++AG ++L  S      +L  V      + 
Sbjct: 408 DGQQQEWLATAQESAESMLTLLNDILDFSKIEAGHLELEQSAFSPEQILKGVHDLFLPRA 467

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD 718
               I +++     L ++V  D  RL Q+   ++SN + F+ +G     V  +A R++  
Sbjct: 468 TAKGITLELEQGANLPAWVQGDPGRLRQVLMNLVSNGIKFTHQGGVTMRVAQQAKREDSL 527

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            + F V+++G  IP      +F  F  +  ++  +  G GLGL+I    ++L GG + + 
Sbjct: 528 LLQFEVQDSGIGIPPQQLTQLFQPFNQLDPSYSRKYGGSGLGLAICRHLVDLMGGEIRLE 587

Query: 776 SSDEG 780
           S   G
Sbjct: 588 SPPSG 592


>gi|332687249|ref|YP_004457023.1| sensor histidine kinase [Melissococcus plutonius ATCC 35311]
 gi|332371258|dbj|BAK22214.1| sensor histidine kinase [Melissococcus plutonius ATCC 35311]
          Length = 296

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 132/241 (54%), Gaps = 10/241 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISA 615
           E  E  R+ ++ K+  + +VS+++R+PLT+IIG+  L++ S+        +  ++ Y+ A
Sbjct: 46  EAIEDERQIEKSKDELITNVSHDIRTPLTSIIGYLGLIEESQFHCQEDLLKYTHIAYVKA 105

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               LL  V+D+ +   V    + L+ ++  +  ++ ++      +  +N I I+V++  
Sbjct: 106 KQMKLL--VDDLFEYTKVHQTAVPLHTTSFDMVQMMEKLAVDFGLEAEKNGITIQVMT-- 161

Query: 676 KLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            L S +   D ++L+++F+ ++SNA+ +   G  +I+   +   + I  VKN+GS+IP +
Sbjct: 162 TLNSLIMEGDTEKLVRVFNNLISNALKYGKNGKHIIINLDKVGTEAIIVVKNDGSTIPPE 221

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F+RF  V  +   +  G GLGL+I +  I LHGG++   S++ G T+    +P K
Sbjct: 222 ALNQLFDRFYRVEESRSQETGGTGLGLAIAQGIITLHGGYIYAKSAN-GWTSFIIHLPLK 280

Query: 792 E 792
           +
Sbjct: 281 Q 281


>gi|315501120|ref|YP_004080007.1| gaf sensor hybrid histidine kinase [Micromonospora sp. L5]
 gi|315407739|gb|ADU05856.1| GAF sensor hybrid histidine kinase [Micromonospora sp. L5]
          Length = 1454

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 16/255 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A   L EK + L +A   K+ F+ ++S+ELR+PL +++    LL  +   +L++KQ ++ 
Sbjct: 1027 ARLGLEEKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLAENPERNLSAKQIEFA 1086

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  + + LL+L++DILDL+ ++AG M +  + I   ++   V+Q+ A +  E  +  +
Sbjct: 1087 RTIHGAGSDLLSLIDDILDLSKIEAGRMDVEPTEIQFAEIRGYVEQAFAPQAEEKGLDFQ 1146

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF--------- 719
            V +S     + V D QRL QI   +LSNA+ F+  G+ T+ +  A +N  F         
Sbjct: 1147 VRVSQDLPPALVTDAQRLQQILRNLLSNAVKFTDNGAVTLRIGPAAENAVFDVPALTNAQ 1206

Query: 720  ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F+V + G  I +D    +F  F        RR  G GLGLSI      L GG +++
Sbjct: 1207 RVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGTITV 1266

Query: 775  SSSDEGVTTINCRIP 789
            SS+    +T    +P
Sbjct: 1267 SSAPGQGSTFTLFVP 1281


>gi|144898063|emb|CAM74927.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1117

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 136/265 (51%), Gaps = 27/265 (10%)

Query: 531 IPLPN---------AQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +P+P          A+++  FV   D++R  E AL++  +   +A++ K++F+ ++S+E+
Sbjct: 330 MPIPTEGKDEIADMARSLGYFV---DAIRQREDALSQARDEADQANQAKSAFLANMSHEI 386

Query: 581 RSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           R+P+  IIG + L L+T     L+ +Q  Y+  I  +S  LL ++NDILD + ++AG ++
Sbjct: 387 RTPMNAIIGLSGLALRTG----LDPRQRDYLIKIQNASQTLLGIINDILDFSKIEAGRLE 442

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
                  + D+L++V   I  +  E  + I   + G L    + D  RL Q+ + + +NA
Sbjct: 443 FEQIEFSITDVLDDVANLITRRAEEKGLEIVFATTGDLPQKVIGDPLRLAQVITNLCTNA 502

Query: 699 MDFSSKGSTVI---LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + F+  G  V+   L++  D     +FSV++ G  + E     +F  F S A     R  
Sbjct: 503 IKFTHVGEVVVRVELQSISDGKACLLFSVRDTGIGLTEQQAARLFEPF-SQADASTTRQF 561

Query: 753 -GVGLGLSIVESFINLHGGHVSISS 776
            G GLGLSI    + L  G + + S
Sbjct: 562 GGTGLGLSICRRMVELMEGRIWVDS 586


>gi|27377398|ref|NP_768927.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27350542|dbj|BAC47552.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 833

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 7/255 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++D  R E  L +   A  +A   K+ FV ++S+ELR+PL  IIG++++L      +
Sbjct: 301 LADISDRKRMEGELHKAIWASEQATRAKSDFVANMSHELRTPLNAIIGYSEILFEDAQSA 360

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               +   +  I  +   LL L+++ILDL+ ++AG M L   T  L  +++ V  ++   
Sbjct: 361 GRESEMADLRKIQDAGKHLLGLIDNILDLSKIEAGKMTLYLETFELRPMIDSVAATVTPL 420

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GD 718
             +    +      ++G+  +D  ++ Q    +LSNA  F+  G T+ L A RD    G+
Sbjct: 421 AKKTGNALVANCADEIGTIHSDLTKVRQTLFNLLSNACKFTRNG-TITLTALRDTNAAGE 479

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
           +I F V++ G  +  D    VF  F        R   G GLGL+I +SF  L GG V+++
Sbjct: 480 WIEFQVRDTGIGMTPDQQAKVFEAFTQADDSTTRVYGGTGLGLAITKSFCRLMGGDVTLT 539

Query: 776 SSDEGVTTINCRIPS 790
           S     T    R+P+
Sbjct: 540 SEAGKGTAFVVRLPA 554


>gi|332308372|ref|YP_004436223.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175701|gb|AEE24955.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 661

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 130/234 (55%), Gaps = 12/234 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +  ER    K EA  ++   K+ F+ H+S+ELR+PLT+I+G+T+LL  SK+G   S QS+
Sbjct: 131 IEKERVDRLKAEAENRS---KDRFLAHLSHELRTPLTSILGYTELLMDSKVG--QSAQSE 185

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  +  +S  LL+L+N++LDL+ + A  ++LN S + L+ ++ +V   +     +  + 
Sbjct: 186 -LSIVLNNSKHLLSLLNNMLDLSKIAADKLELNLSEVNLDAMIADVYALMTIPATDKGLT 244

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI-FSVK 724
           + V S   L      D  R  Q+   ++SNA+ F+ KGS    +    R+  D++ F+V 
Sbjct: 245 LTVSSATPLPLKITTDATRFRQVLINLISNAIKFTEKGSVDVSLWSEKRNKTDYLYFTVA 304

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  IP++    +F  F  V++     + G GLGL+I    ++  GG VS++S
Sbjct: 305 DTGIGIPKNQIGCIFKPFEQVADVVSRNQGGSGLGLAICNELVSKMGGDVSLTS 358


>gi|288929066|ref|ZP_06422912.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330050|gb|EFC68635.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 898

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 15/241 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYI 613
           L EKN  +  A + K  F  +VS+ELR+PLT I      LL  ++L  +   Q   +E  
Sbjct: 371 LEEKNREIEAATQAKLMFFTNVSHELRTPLTLIETPVEQLLAENQLSKV---QRGLLEVA 427

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL L+N ILD   V+ G M L  S   L  L+  V            IR+    
Sbjct: 428 HRNVRTLLKLINQILDFRKVEGGKMTLQLSETDLAALIGNVVSEFVAAAEHKRIRLSC-- 485

Query: 674 DGKLGSFVA---DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGS 728
             +L   V    D  ++ ++ S ILSNA+ F+     + ++   D   G    SV N G 
Sbjct: 486 --RLPEHVTAKIDAGKVERVVSNILSNAVKFTPVAGEINVELVVDTPQGTATLSVTNTGK 543

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I E     +F RF    H     G G+GL++ ++F+++HGGH+ +SS  EG T     +
Sbjct: 544 GIAEGDLPHIFERFYQPQH--SEGGTGIGLALAKAFVDMHGGHIGVSSKAEGPTVFTVHL 601

Query: 789 P 789
           P
Sbjct: 602 P 602


>gi|317130981|ref|YP_004097263.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475929|gb|ADU32532.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 608

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 14/229 (6%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILD 629
           FV +VS+ELR+PLT++  + + L     G++N  +   +++      +  ++ LVND+L 
Sbjct: 380 FVANVSHELRTPLTSMKSYLEALAD---GAINDSEVAPRFIHVTQTETERMIRLVNDLLQ 436

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L+ +D+    +N   I L   ++++ +   +ATK    + + ++  +  +  F  DR +L
Sbjct: 437 LSKMDSKDYSMNVVEINLPQFMDQIIERFEMATKNESISFKRRLTVNTDIIVF-GDRDKL 495

Query: 688 LQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
            Q+   ILSNA+ +S +G T++  LK A+DN   I S+K+ G  IP++    VF+RF  V
Sbjct: 496 TQLLDNILSNAVKYSPEGGTILCSLKIAKDN--VIVSIKDEGVGIPKENIPYVFDRFYRV 553

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             A      G GLGL+I +  ++ HGG + +SS     TTI+  +P  E
Sbjct: 554 DKARSRNLGGTGLGLAIAKEIVHAHGGSIWVSSDWGRGTTISFSLPFDE 602


>gi|217969772|ref|YP_002355006.1| histidine kinase [Thauera sp. MZ1T]
 gi|217507099|gb|ACK54110.1| histidine kinase [Thauera sp. MZ1T]
          Length = 596

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 134/278 (48%), Gaps = 18/278 (6%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
           +++ G++ +L ++VL      L N +TM     +    +AE  L + +EAL++A      
Sbjct: 154 ETMSGSMRVLVETVL-VMYDKLAN-RTMAMTREINRRRQAEAELQKAHEALKRAKENAES 211

Query: 566 -DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
             E K+SF+  +S+E+R+PL  I+G + L+   +L    + Q + ++ I  +   LL+++
Sbjct: 212 VSEAKSSFLASMSHEIRTPLAAILGMSHLMHQEEL---PASQRERLDVIENAGRHLLSII 268

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N ILDL+ ++AG   L+ + + L  ++ E    +A +     + ++   D   G+F+ D 
Sbjct: 269 NGILDLSKIEAGKFTLDEAALDLRGVVEEAMAMLAHQAEAKGLSLRAEFDLPPGTFLGDA 328

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFN 740
            RL Q     L NA+ F+ +G   +  +A     D  D  F V++ G  I     + +F 
Sbjct: 329 TRLRQALVNYLINALKFTERGGITVRCSASAVDTDAVDVRFVVEDTGPGIAAAELRRLFK 388

Query: 741 RFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F        G+  G GLGL+I      L GG     S
Sbjct: 389 PFTQTEATSTGEHGGTGLGLAITARLAELMGGQAGAES 426


>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
 gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
          Length = 923

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVE 611
           R L    EA     + K+ F+  +S+E+R+P+  ++G T+LL    LG+ L   Q Q+VE
Sbjct: 254 RELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELL----LGTELEPTQRQFVE 309

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-- 669
            +  S   LL+++NDILD + ++AG ++L+     L +LL E  +  +       + +  
Sbjct: 310 AVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLELVA 369

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKN 725
            +  D KL     D  RL QI + +L NA+ F+  G     +++   RDNG      V +
Sbjct: 370 DLPPDEKL-IVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEPRDNGLKLALVVSD 428

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            G  IP D  + +F  F+       R+  G GLGL+I    +++ GG + + S+
Sbjct: 429 TGIGIPLDAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVEST 482


>gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
          Length = 1113

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 10/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 362 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 418

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 419 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 478

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 479 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 538

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 539 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 598

Query: 775 SSSD 778
            S +
Sbjct: 599 HSEE 602


>gi|152061169|dbj|BAF73628.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tabaci]
          Length = 905

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 268 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 323

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 324 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 383

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 384 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 441

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 442 SSQDVRALFQAFSQADNSPSRQPGGTGLGLVISKRLIEQMGGEIGVDST 490


>gi|332703496|ref|ZP_08423584.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553645|gb|EGJ50689.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 715

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 177/399 (44%), Gaps = 48/399 (12%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           LHVIVT            +LT  ++ E +Y  L       +D++   + +   DGR+ L 
Sbjct: 180 LHVIVT------------DLTAYLEKEVRYRRLHTFLWSFLDNIPCPLHITDLDGRLSLV 227

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQG 516
           NP + SL              R       R+ +E  G ++   F   +    +  K L+ 
Sbjct: 228 NPDWESLMG------------RRYVDVVGRHVSEIFGEEIARSFLEHMRQVAESGKPLRI 275

Query: 517 TLELLSDSVL---EYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEI 568
             +L    VL   +  + P+ N   ++  V     ++T+  +AE+ L +  +    AD  
Sbjct: 276 EDKLYLGGVLRCFDTILFPVLNESGLVEGVGGFSLDITERKKAEQELVQARQKAEVADRA 335

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  I+G  +LL  S+      ++ +++E   AS+  LL LVND+L
Sbjct: 336 KSQFLANMSHELRTPLNGIVGMIELLLISR---SEPEERKFLELARASAHDLLGLVNDLL 392

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           +L+T++    +       L + ++ V +  + +     +      D  L G F+ D  RL
Sbjct: 393 ELSTLERKRFEPISRPFGLAEAVDSVARFFSVRARLKGLDFTACVDPALSGQFLGDELRL 452

Query: 688 LQIFSKILSNAMDFSSKGSTV--ILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFN 740
            Q+   +L NA+ F+  GS    +  A +D  D       F V + G  IP D    VF 
Sbjct: 453 KQVLINLLDNAVKFTESGSVRLEVRLAEKDRQDGAALPVTFLVSDTGIGIPNDKLAEVFE 512

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F    +   +R  G GLGL+I +  ++  GG +   SS
Sbjct: 513 GFNLGENYLTKRYGGAGLGLAIAKHIVSKLGGRIEAESS 551


>gi|297196322|ref|ZP_06913720.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722900|gb|EDY66808.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 1150

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 22/246 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L  + + L +    K+ F+ ++S+ELR+PL +++    LL  +  G+L  KQ  Y
Sbjct: 743 QARQELEARAQQLSRTSMYKSEFLANMSHELRTPLNSLLILAQLLAQNLEGNLTEKQVDY 802

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I ++ + LL L+NDILDL+ V+AG M ++ +   L+ L+  V+ +      E  +  
Sbjct: 803 AEVIHSAGSDLLQLINDILDLSKVEAGKMPVHPAAFPLSGLMEHVEATFRPVATERELAF 862

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----------RDNG 717
           + +++     ++  D  RL Q+   +LSNA+ F+ +G  V L+ A           RD+G
Sbjct: 863 EAVTEPDAPQWLTTDESRLRQVLRNLLSNALKFTDQGR-VELRVAVAGEEEVPSSLRDSG 921

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             + F V + G  IP D  +S+F  F      ++ H G   G GLGLSI      L GG 
Sbjct: 922 PVVAFRVVDTGIGIPADRLESMFGAFQQGDGTTSRHYG---GTGLGLSISREVARLLGGT 978

Query: 772 VSISSS 777
           +   S+
Sbjct: 979 IEAQST 984


>gi|153833417|ref|ZP_01986084.1| putative sensor protein RcsC [Vibrio harveyi HY01]
 gi|148870305|gb|EDL69235.1| putative sensor protein RcsC [Vibrio harveyi HY01]
          Length = 776

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 129/243 (53%), Gaps = 12/243 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+A  E  +A +K    K++ + +VS+E+R+PL  IIG+  +L+  K    +   S  +E
Sbjct: 393 EKAAKEALDATKK----KSTLLSNVSHEIRTPLNAIIGYLHMLRVDKC---DGSCSHELE 445

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +S  +L++VND+LD   +D+   KL+   + +N +  +++++     ++  +++ +
Sbjct: 446 GIRTASNTILDIVNDLLDFERLDSVNYKLHPKHVPINKITRDLEKTFHPLANQKGLKLSI 505

Query: 672 ISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNN 726
           + +G  GS     D  R  Q  S I++NA+ F+  G   I  +    GD    +F+V++ 
Sbjct: 506 VKEGIGGSHQLFVDELRFQQALSNIITNAIKFTDVGKIEISISMDTIGDQRMVVFAVRDT 565

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I E+   ++FN F       ++ G GLGL+I ++ INL GG +++ S  +  +    
Sbjct: 566 GRGIREEDLDTIFNSFEQANQEDKQFGFGLGLAITKAIINLMGGVLAVESKIKQGSIFKI 625

Query: 787 RIP 789
            +P
Sbjct: 626 ALP 628


>gi|28868897|ref|NP_791516.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852136|gb|AAO55211.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 917

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H  ++ +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|32477914|ref|NP_870908.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448471|emb|CAD77986.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 953

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 125/261 (47%), Gaps = 30/261 (11%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++V D    E++L +       A+  +  F+ ++S+E+R+P+  I+G  D+LK       
Sbjct: 536 IDVDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDHLRDPD 595

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N    Q VE I  +   LLN++NDILDL+ +D+G M+L    +  + LL EV+  +  + 
Sbjct: 596 NI---QVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRA 652

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAA 713
            E ++ +K+  DG +   +  D  RL QI   ++ NA+ F+  G   IL        +AA
Sbjct: 653 SEKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDSGEVKILVGYDGPGKRAA 712

Query: 714 R-DNGD-------------FIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             D  D              IF + + G  I PED   S+F  FV       R   G GL
Sbjct: 713 EIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQA-SLFEPFVQADSTSTRSFGGTGL 771

Query: 757 GLSIVESFINLHGGHVSISSS 777
           GL+I     +  GG VS+ S+
Sbjct: 772 GLAICRRLAHALGGDVSVEST 792


>gi|186683692|ref|YP_001866888.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186466144|gb|ACC81945.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 684

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 16/257 (6%)

Query: 546 TDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            + VRA+  R  T + EA   A+ +K+ F+  +S+ELR+PLT+++G++ +L++ KL   +
Sbjct: 270 AEEVRAQVIREQTARQEA-EAANRMKDEFLAVLSHELRTPLTSMLGWSKILRSKKLD--D 326

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              S+ +E I  ++   + L+ DILD++ +  G ++LN S + L  ++    +++     
Sbjct: 327 KATSRALEAIERNAISQMQLIEDILDVSRIIRGQLRLNVSAVNLISVMEAALEAVRPLAE 386

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
              I++  + D  +GS   D  RL QI   +L+NA+ F+ KG  V +  +   G+     
Sbjct: 387 PKEIQLNTVLDTSVGSVYGDPARLQQIVWNLLTNAIKFTPKGGRVEVNLSIVYGEEQQTT 446

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                  V + G  I  +    VF RF        R   G+GLGL+IV   + LH G + 
Sbjct: 447 QKYAQIQVIDTGIGISSEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHKGTIF 506

Query: 774 ISSSDEGV-TTINCRIP 789
             S   G   T   R+P
Sbjct: 507 AQSPGSGQGATFTVRLP 523


>gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1093

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 130/261 (49%), Gaps = 11/261 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNI 587
           LP  Q +   +     +  ER  L  + +A R+A E    IK+ F+  +S+ELRSPL  I
Sbjct: 676 LPTVQAICRDITERKQIEQEREQLLIREQAAREAAESANRIKDEFLAVLSHELRSPLNPI 735

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  +LK  +L    ++++  +  I  ++ +   L+ D+LD++ +  G + LN +++ L
Sbjct: 736 LGWAQMLKNYELDQPTTQKALCI--IERNARLQAELIEDLLDVSRILRGKLNLNTTSVSL 793

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++    +++       +I ++   +  +G  + D  RL Q+   +LSNA+ F+  G  
Sbjct: 794 VVVIEAALETVRLAAQAKSIELRTQLETPVGRVLGDAARLQQVVWNLLSNAVKFTPSGGQ 853

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           V ++  + +G     VK+ G  I  +    +F+ F        R+  G+GLGL+I    +
Sbjct: 854 VEIELEQIHGGVEIRVKDTGKGITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIARHLV 913

Query: 766 NLHGGHVSISS--SDEGVTTI 784
            LHGG +   S   ++G T I
Sbjct: 914 ELHGGKIWAESLGENQGATFI 934


>gi|3320466|gb|AAC82662.1| RcsC [Proteus mirabilis]
          Length = 507

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 132/254 (51%), Gaps = 7/254 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   V+++  V+ ER+L     A  +A++ K+ F+  VS+ELR+PL  IIG  +LL++  
Sbjct: 11  ICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSL- 69

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             + N + ++ ++ +  SS++LL +++DILD + +++  +K++        +++ V  + 
Sbjct: 70  --TQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNY 127

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              + + ++ I    +  +   V  D  R+ Q+ S +L+N++ F++ G  + L   RD  
Sbjct: 128 LPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTGC-ITLHLYRDEY 186

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F + + G  I E M   +F  F  VS        G GLGL+I E  INL  G +S+ 
Sbjct: 187 YLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVV 246

Query: 776 SSDEGVTTINCRIP 789
           S +   +    RIP
Sbjct: 247 SQENVGSRFTVRIP 260


>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
 gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
          Length = 1235

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +    A + K++F+ H+S+E+R+P+  IIG + L+  ++L   N +Q  ++E + 
Sbjct: 468 LVEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTQL---NKRQRDFMEKVL 524

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS +LLN +ND+LD + ++A  + L+Y+   + D+L  V    A K     + + +  D
Sbjct: 525 SSSDVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQYKGVELLLDID 584

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729
            K+   ++ D  RL QI   + SNA+ F+ +G  +I    L+         FSV + G  
Sbjct: 585 QKVPFQWIGDPIRLGQILINLASNAVKFTEQGEVIIRVKLLEQHNQQSTLRFSVIDTGIG 644

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I ++    +F  F+       R+  G GLGL+I      L GG + + S
Sbjct: 645 IEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGGRIWVES 693


>gi|326804104|ref|YP_004321922.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651621|gb|AEA01804.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 614

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 173/360 (48%), Gaps = 26/360 (7%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D+L  GV +     RIK++N A  S++  ++N ++             +Y     G+ L
Sbjct: 257 MDYLVVGVLMIDKKHRIKVANKAAYSIFDLDDNVIN------------HKYEEVLTGYRL 304

Query: 500 FAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
              I T +   E  + +  L    + +L+ +I+ +P         NV+        L   
Sbjct: 305 LQMIETCYSTKENVNDEVYLYYPKELILDVNILYVPKK------ANVSGISEQVVVLAYD 358

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
              +R+ +++++ F+ + S+EL++P+T + GFT+ L    L   ++ + ++VE ++  + 
Sbjct: 359 ITEIRRLEKVRSDFIANASHELKTPVTALKGFTETLLDGALEDEDTAR-EFVEIMNREAN 417

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+NDILDLA ++   +     T+ LN ++ EV  S+     EN + +   +D + G
Sbjct: 418 RLGFLINDILDLAKIEQDQLGHRSETVQLNRVIAEVVHSLEIPASENRVEVHYDNDLEAG 477

Query: 679 -SFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDM 734
             F  +  RL QI + +++NA+ ++ ++G  V + +    D+   + ++++NG  IP++ 
Sbjct: 478 IRFTTEEMRLKQILTNLINNAIKYNKAEGGQVWISSTVTEDDKYVVVAIRDNGLGIPDED 537

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F RF  V         G GLGLSIV + +    G + + S     +T    +P  +
Sbjct: 538 IPRIFERFYRVDKTRSTASGGTGLGLSIVRNLVASMSGKIDVVSELNEGSTFTVYLPKND 597


>gi|303248516|ref|ZP_07334774.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490136|gb|EFL50056.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 676

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 22/241 (9%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +FV+V+  +RA     E  EA R    +K++F+ ++S+E+R+PL  I+G T +L+ +   
Sbjct: 272 SFVDVSSLIRAR---VEAEEASR----MKSAFLANMSHEIRTPLNAILGLTQILRKT--- 321

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L  +Q   V+ + ++   LL ++ D+LD + ++ G +++  + + +  LL E ++ +  
Sbjct: 322 ALTDEQRDCVDTMRSAGEGLLVILGDLLDFSRMEVGRLEIRPAPMDIERLLEETRRVMEP 381

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              E  + + +  D  L    V D  RL QI   +LSNA+ F+ +G  V L A+R     
Sbjct: 382 LAAERGLTLCLERDPDLPRVLVCDPMRLKQILLNLLSNAIKFTPQGR-VTLYASRAREPM 440

Query: 720 I--------FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
                    F+V++ G  IPE M + +F  FV +     G   G GLGLSI +  + L G
Sbjct: 441 AYEGPVAVQFAVRDTGPGIPEGMRERIFEPFVQSDETIAGNHGGTGLGLSISDRLVRLLG 500

Query: 770 G 770
           G
Sbjct: 501 G 501


>gi|298483936|ref|ZP_07002106.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298269845|gb|EFI11436.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 533

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 128/241 (53%), Gaps = 11/241 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL    
Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLL---- 338

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           + S + K+ Q YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ ++
Sbjct: 339 IESDDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRN 398

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
              K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  ++  +   ++
Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAES 457

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  F+V + G  I  D    VF+RFV  N+     +G GLGLSI  S I   GG + + 
Sbjct: 458 NEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIGVE 514

Query: 776 S 776
           S
Sbjct: 515 S 515


>gi|298376615|ref|ZP_06986570.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266493|gb|EFI08151.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 605

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 134/250 (53%), Gaps = 8/250 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ +    E +L E       AD++K+ ++  +S+E+R+PL  I GF++L+        +
Sbjct: 363 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 419

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y  + +++L++ +  S   ++ 
Sbjct: 420 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 478

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +++ +  +     F  D  RLLQ+ + +++NA+  + +GS  +    + +    F V
Sbjct: 479 PGGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYV 538

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I ++  K VF+RFV  N +     G+GLGL+I +  +   GG + ++S     +
Sbjct: 539 RDTGIGIDKEKLKDVFDRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 595

Query: 783 TINCRIPSKE 792
             +  +PS E
Sbjct: 596 EFSFILPSHE 605


>gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
          Length = 1342

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 10/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 591 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 647

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 648 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 707

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 708 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 767

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 768 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 827

Query: 775 SSSD 778
            S +
Sbjct: 828 HSEE 831


>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
 gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
          Length = 1035

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 21/273 (7%)

Query: 530 IIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           IIPL  +    +FV    +++  ++ +  L    +A  +A   K+ F+  +S+E+R+P+ 
Sbjct: 451 IIPLQESSATDSFVGTWEDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRTPMN 510

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG T LL  +    LN +Q ++V  I  S   LL ++NDILD + +++G ++L     
Sbjct: 511 AIIGLTGLLLDT---PLNPQQQEFVNTIRLSGDALLGVINDILDFSKIESGKLELESYPF 567

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L   + EV   +A++  E  + +   I  G   + + D  RL Q+   ++ NA+ F+ K
Sbjct: 568 NLRTCVEEVLDLLASRAAEREVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKFTQK 627

Query: 705 GSTVILKAARDNG-----------DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           G+  +   A+               ++F++++ G  I       +F  F  V  +   Q 
Sbjct: 628 GNVTLYVKAKPMPMSQYEFMPSYYSYLFAIQDTGIGISAAGMNRLFKPFSQVDASTTRQY 687

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G GLGL I +  +   GG + + S   G + +
Sbjct: 688 GGTGLGLVICQRLVERMGGQIWVESKKTGESLV 720


>gi|294054418|ref|YP_003548076.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613751|gb|ADE53906.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 780

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 11/225 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A  +A+  K++F+  +S+E+R+PL +IIGF+D+L+ ++L   + +Q   +E I +S  +
Sbjct: 393 DAAEEANMAKSAFLATMSHEIRTPLNSIIGFSDMLQETEL---DDEQCSDLEAIRSSGAL 449

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDILDL+ ++AG   LN  ++ L + + EV       + +  + ++V     L  
Sbjct: 450 LLELINDILDLSKIEAGKSNLNAVSLDLEETVQEVSSLFKHGLRKKGVELEVEFAEDLPQ 509

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPED 733
           FV  D+ RL Q+ + +LSNA+ F+SKG   +     D  +     +  +V + G  IPE 
Sbjct: 510 FVTTDKLRLQQLLNNLLSNAVKFTSKGIIHVRAWYEDRKEPEGPRYYVAVSDTGIGIPEH 569

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             + VF  F        R   G GLGL+I +   +L GG +S+ S
Sbjct: 570 KLEEVFQAFTQADSSTTREYGGTGLGLAICKRITHLMGGEISVVS 614


>gi|229016834|ref|ZP_04173762.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
 gi|229023039|ref|ZP_04179554.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228738262|gb|EEL88743.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228744395|gb|EEL94469.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
          Length = 591

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 135/250 (54%), Gaps = 8/250 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +  +V   R +TE+    R+ ++++  F+ +VS+ELR+P+  + G+++ +    +     
Sbjct: 345 IRGAVAVLRDMTEE----RRLEKMRQDFIANVSHELRTPMVMLQGYSEAI-LDDIVQTKE 399

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           + +++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +
Sbjct: 400 EINEFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKD 459

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +++ V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L    +N    F V+
Sbjct: 460 KEVQLTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTENSGLTFEVQ 519

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++G+ IPE+    +F+RF        RG++ G GLGL+I ++ +  H G +S+SS     
Sbjct: 520 DSGAGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEG 579

Query: 782 TTINCRIPSK 791
           TT +  +P++
Sbjct: 580 TTFSVYLPNR 589


>gi|238483285|ref|XP_002372881.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
 gi|220700931|gb|EED57269.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
          Length = 2341

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 37/263 (14%)

Query: 552  ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL +  EA +KA                  + K+ F+ ++S++LR+P+  +IG ++LL
Sbjct: 1858 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1917

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +KL   + +Q +YVE I   +  LL L+NDILD + ++AG MK++   + + + ++EV
Sbjct: 1918 KATKL---DKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1974

Query: 655  KQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708
             +++     +  +       KV  D  +   + D  RL QIF  +LSN+  F+ KGS TV
Sbjct: 1975 VRALRYTHRDRGLETIEDLEKVPPDLVV---LGDPVRLHQIFMNLLSNSYKFTPKGSVTV 2031

Query: 709  ILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVE 762
              +  R+    I    SV + G  IPE+    +F  F S A     R   G GLGLSI +
Sbjct: 2032 RARVTREGKGRIRLECSVSDTGIGIPEEQKSRLFRPF-SQADSSTARSYGGSGLGLSICK 2090

Query: 763  SFI-NLHGGHVSISSSDEGVTTI 784
            + I ++ GG + + S+    TT+
Sbjct: 2091 AIIEDVLGGAIWLDSTPGVGTTV 2113


>gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
 gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
          Length = 1331

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVSRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|331016785|gb|EGH96841.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 917

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL +I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNSILGFTHLLQKSE---LTPRQFDYLATIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H  ++ +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|319950785|ref|ZP_08024673.1| multi-sensor signal transduction histidine kinase [Dietzia cinnamea
           P4]
 gi|319435542|gb|EFV90774.1| multi-sensor signal transduction histidine kinase [Dietzia cinnamea
           P4]
          Length = 514

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 129/256 (50%), Gaps = 6/256 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+   T ++  D   A R   E+   L + D  K++FV  VS+ELR+PL +I+G+T++L 
Sbjct: 252 AEAFNTLLDTRDDYEAGR--EEQLSRLEELDRQKDAFVSTVSHELRTPLASIVGYTEMLC 309

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G L S Q + V  +  ++  L  L+ D+L L+ ++A  + + +  + L +++  V 
Sbjct: 310 DGDGGELTSAQHRLVGVVQRNADRLRGLIEDLLILSRIEAQNLDIAHERLSLGEVVGNVT 369

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +S+  +   +   + ++   +    + D   L +  + ++SNA+ F+  G +V +  A D
Sbjct: 370 ESL--QPAADRAGLALVERVEPAEVIGDALHLERAVTNLVSNAIKFTPGGGSVTVGVAVD 427

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 +V + G  IPE   + +  RF  ++   QR   G GLG+SIV++  + HGG + 
Sbjct: 428 EHVATVTVADTGIGIPEAEQEHLGTRFFRSSSAQQRSIPGTGLGVSIVQAIADAHGGGLD 487

Query: 774 ISSSDEGVTTINCRIP 789
             S +   TT    IP
Sbjct: 488 FDSVEGEGTTFRLTIP 503


>gi|117619875|ref|YP_855359.1| hybrid sensory histidine kinase BarA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561282|gb|ABK38230.1| sensor protein BarA [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 903

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 13/223 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  LLKTS    L   Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTS----LTPSQTDYMQTIEKSARNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG ++L +    L D LNE    +    H+  + + +  D ++  ++
Sbjct: 341 GIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYL 400

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIPEDMC 735
             D  RL Q+ + +  NA+ F+  G+       I  A+         +++ G  I E+  
Sbjct: 401 TGDPMRLQQVLTNLTGNAIKFTEHGNVDVRIEQIGSASGSKVRLNVLIRDTGIGISEEQQ 460

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F  F        RR  G GLGL I +  +   GG +   S
Sbjct: 461 RQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFES 503


>gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 1153

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 125/245 (51%), Gaps = 6/245 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQ 606
           +V A +   ++ EAL   D+ K +F  ++S+E R+PLT ++G   +LL+ + L     KQ
Sbjct: 322 NVHAYQEEQKRAEALAAIDQAKTAFFNNISHEFRTPLTLMLGPLEELLQDTALQESTYKQ 381

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +E    ++  LL LVN++LD + ++AG +K ++  + L  L  ++  S  + +    
Sbjct: 382 P--IEATHRNALRLLKLVNNLLDFSRIEAGRVKASFRPVDLVGLTVDLASSFRSLIERAG 439

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + + V  +       AD +   ++   +LSNA  ++ KG   +   A  +G  +  V + 
Sbjct: 440 LELSVDCEPMPAVVYADAEMWEKVVLNLLSNAFKYTLKGHIGVQLTAEADG-VVLRVSDT 498

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP      +F RF   A+ G R   G G+GLS+V   + LHGG ++++S +   +T 
Sbjct: 499 GVGIPAAELPHMFERFHRVANAGGRTYEGSGIGLSLVHELVRLHGGTITVTSREGEGSTF 558

Query: 785 NCRIP 789
             R+P
Sbjct: 559 TVRLP 563



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 28/251 (11%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L+++++    F    S++L+ PL  I  F DLLK     +L  +   Y++ +  ++  + 
Sbjct: 904  LQRSNDNLQQFAYVASHDLQEPLRKIQSFGDLLKNQYADNLG-EGIDYLKRMQTAANRMS 962

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             L+ D+L  + +     +    T+ L + L+ V   +   + E    +++     L + +
Sbjct: 963  TLIRDLLSFSRITT--RQEVTETVSLAETLSMVVLDLEVMIQETGAEMRI---HPLPTVL 1017

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGST---------------------VILKAARDNGDFI 720
             DR +L+Q+F  +LSNA+ F  K S                        ++  R    + 
Sbjct: 1018 GDRSQLIQLFQNLLSNALKFRRKSSAGVSVPPVVEVSAQLVNVSELPSTVRPTRSVAAYY 1077

Query: 721  -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
               V +NG    E     +F  F     + + +G G+GL+I E  +  HGG ++  S   
Sbjct: 1078 RIDVTDNGIGFNEKYLDRIFQVFQRLHGKSEFQGTGIGLAICEKVVANHGGVITAQSQPG 1137

Query: 780  GVTTINCRIPS 790
               T +  +P+
Sbjct: 1138 EGATFSVYLPA 1148


>gi|20260804|gb|AAK54092.2|AF362373_1 histidine kinase DhkL [Dictyostelium discoideum]
          Length = 1709

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 139/271 (51%), Gaps = 13/271 (4%)

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ--HVSYELRSP 583
             E SI P+ +    + + N T     ++ + E+++ L +   I+ S ++   +S+++R+P
Sbjct: 786  FEASISPVLDQFQQILYYNCTKRDVTQKRIDEESKTLEQNKIIEKSRLRLSMMSHDIRTP 845

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            ++NIIG  DLL  +   SL+  Q  Y+E I  SS  LL ++NDILD++ ++AG + ++Y 
Sbjct: 846  MSNIIGMADLLLDT---SLSQHQHHYLEIIKNSSNTLLTIINDILDISKIEAGKLDIDYE 902

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
            +   N  +++V +S+A ++    + +    D K+ +  +    RL QI + +L N++ F+
Sbjct: 903  SFDFNATVSQVVESMAQRVQSKGLELLSYVDPKIPNILIGPSSRLNQILTNLLGNSLKFT 962

Query: 703  SKGSTVILKAARDNGDFIFSVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             KG   I     D  D  + +K    + G  I ++    +F  F        R+  G GL
Sbjct: 963  DKGEISICCLLNDETDSEYEIKVDVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGL 1022

Query: 757  GLSIVESFINL-HGGHVSISSSDEGVTTINC 786
            GL+I +  ++L   G +S+ S     +T  C
Sbjct: 1023 GLAICKELVHLAFNGEISVESQYGHGSTFTC 1053


>gi|808104|gb|AAA82924.1| regulator of multiple functions [Pseudomonas tolaasii]
          Length = 909

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L+ +   Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRHVDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L + V D  RL QI + ++SNA+ F+ +G T++ +A       D+     SV++ G  +
Sbjct: 391 PL-AVVGDPLRLKQILTNLISNAIKFTREG-TIVARAMVEDEEEDSVQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SNQDVRALFQAFTEADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|307297683|ref|ZP_07577489.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916943|gb|EFN47325.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 416

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 14/239 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTIL 620
           ++ + ++  FV +VS+ELR+PLT+I G+ + L       L  K++ Y  +  I   S  +
Sbjct: 180 KEVEAMRRDFVANVSHELRTPLTSIHGYAETLAED---DLEDKETVYRFLSIIENESARM 236

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ND+LDL  +++G    +   + L +++N V + +     E N+ I V  D   G F
Sbjct: 237 TRLINDLLDLEKLESGEASFSKEDVELGEVVNYVMRIVEPLASEKNVSINVDVDE--GIF 294

Query: 681 V-ADRQRLLQIFSKILSNAMDFS---SKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMC 735
           V  D  RL+Q+   ++ NA+ ++     G   I L+A   N   +  V++ G  IPED  
Sbjct: 295 VEGDFDRLVQLLLNLVDNAVKYTFAKEHGPKEIWLRAYAQNNSAMIEVEDTGVGIPEDSL 354

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K +F RF  V  A   +  G GLGL+I    +  HGG +S+ S     T +  ++P K+
Sbjct: 355 KHIFERFYRVDKARSRKMGGTGLGLAITRFIVEKHGGTISLESEYGTGTILKVKLPLKK 413


>gi|218887779|ref|YP_002437100.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758733|gb|ACL09632.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 571

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 15/261 (5%)

Query: 529 SIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           ++ P+ NA   +  V     +VT++ R ER L    EA   AD+ K+ F+  +S+E+R+P
Sbjct: 137 TVFPVRNAAGQVAMVAEYVRDVTETRRMERELRVAKEAAEAADKAKSEFLASMSHEIRTP 196

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  ++G  DL   +    L+ +Q +Y+E    S+  LL L+NDILD + ++AG+++L+  
Sbjct: 197 MNGVLGMLDLALDT---PLDEEQREYLEAAQNSAESLLALINDILDFSKIEAGMVELDSQ 253

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L   L+ +      +  E  +    ++ +G     V D  RL Q+   +L NA+ F+
Sbjct: 254 VFRLRKRLSTLHTMFVHRAEEKGLGFAFLVPEGVPDGLVGDPMRLRQVLVNLLDNALKFT 313

Query: 703 SKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             G   +    ++A  ++    FSV ++G  I +   + +F RFV       RR  G GL
Sbjct: 314 EAGRVSLAVRTVQATPESMLLEFSVTDSGPGILDKHREHIFERFVQADGSLSRRHKGTGL 373

Query: 757 GLSIVESFINLHGGHVSISSS 777
           GL+I +    L GG + + S+
Sbjct: 374 GLAICKRLALLMGGDIRVDSA 394


>gi|182412925|ref|YP_001817991.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840139|gb|ACB74391.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 531

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 117/251 (46%), Gaps = 22/251 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG--SLNSKQSQYV 610
           +AL E     R+AD+ K+ F+  +S+ELR+PLT ++    LL T      +L+++  Q  
Sbjct: 144 QALREAEAKARRADQTKDQFLAALSHELRTPLTPVL----LLATEAAAQPALDARARQDF 199

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENN 666
           E I+ +  +   L++D+LDL  +  G MKL         VL D +  V+   A K  E  
Sbjct: 200 EMIARNVALEARLIDDLLDLTRISRGKMKLEKQPQDVLHVLRDAMENVRPDFAEKRLELT 259

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVK 724
             +  +S         D  RL Q+F  +L NA  F+  G  V ++   A D    I  + 
Sbjct: 260 TVLPALS----AVVSCDGARLQQVFWNVLKNAAKFTPVGGKVTIQVRFAPDGAQVITEIT 315

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR---GQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +NG  +       VF  FV   H    G  R  G+GLGL+I  S + LH G +   S   
Sbjct: 316 DNGMGMTAAELGRVFEAFVQGDHANAGGAHRFGGLGLGLAISRSLVVLHDGSIEAQSDGP 375

Query: 780 G-VTTINCRIP 789
           G  TTI  R+P
Sbjct: 376 GHGTTITIRLP 386


>gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
 gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
          Length = 991

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 10/222 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  +IG TDLL  S   +L+++Q ++ + IS+S   LL LVNDIL
Sbjct: 340 KSQFLANMSHEIRTPLNGVIGMTDLLLES---ALDTEQRKFAQTISSSGRNLLRLVNDIL 396

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + ++A  +++ Y    L D+L EV    A   HE N+ +  + D  +      D  RL
Sbjct: 397 DFSKIEANKLEIEYLDFDLLDVLEEVIALFAYSAHEKNVDLIFLPDHTIPFRLKGDAARL 456

Query: 688 LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            QI   ++SNA+ F+++G  V    L+   D    I F+V + G  I  +  ++VF  F 
Sbjct: 457 QQILVNLVSNALKFTAEGEVVFSVDLERESDATATIRFTVSDTGIGIDSERIEAVFAPFT 516

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
                  R+  G GLGLSI           + + SS E  +T
Sbjct: 517 QADGSMIRKYGGTGLGLSISNQLARKMNSEIHVQSSPENGST 558


>gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 1236

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 170/383 (44%), Gaps = 34/383 (8%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E KY ++        ++ +EG+    P GR   +NPA   +        +P   I  I  
Sbjct: 555 EAKYRSI-------FENAAEGICQTTPQGRYLSANPALAQIL----GYATPADLIEGITD 603

Query: 486 TCSRYYNESDGWDLFAA------IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             ++ Y + +    F A      +++ F+ +     G +  +S++     ++     Q +
Sbjct: 604 IKTQVYIKPNRRAEFIAEMQANSVVSGFESQVYRQDGNIIWISENA---RVVRDATGQII 660

Query: 540 L---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               T  ++T+   A  AL +  EA   A   K++F+ ++S+ELR+PL  IIG++++L  
Sbjct: 661 CYEGTVEDITERKAASVALKQAKEAAIAASRAKSTFLANMSHELRTPLNAIIGYSEILTE 720

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               S        +E I  +   LL L+NDILD++ ++AG M L      ++ L+  V  
Sbjct: 721 EAEDSGYRHIVPDLERICTAGRNLLTLINDILDISKIEAGRMDLYLEDFSISALIESVIS 780

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +    +  N+  ++V    ++    AD  ++ QI   +LSNA  F++ G  + LK +   
Sbjct: 781 TAQPLVDRNSNTLEVECSDQIDILYADITKVRQILLNLLSNAAKFTTAGQ-IKLKVSPQP 839

Query: 717 GDFI--------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            +F         F V + G  +  +    +F  F        RR  G GLGL+I + F  
Sbjct: 840 AEFPNTAPSLIQFQVSDTGIGMSPEQLDLLFQPFTQGDASTTRRYGGTGLGLTISQRFCQ 899

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           + GG ++I S  +  +T    +P
Sbjct: 900 MMGGTITIDSQLDCGSTFTVILP 922


>gi|186681986|ref|YP_001865182.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186464438|gb|ACC80239.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 595

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 20/258 (7%)

Query: 551 AERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           A   L E+ E  R+    A  +K+ F+ +VS+E+R+PL  +IGF  L+    +     +Q
Sbjct: 310 AHATLYEELEVARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLI-LEGMADDPEEQ 368

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +Q++      S  LLN++NDILD+A ++AG M+L Y+ + LN+L ++V+  +  +    N
Sbjct: 369 NQFLAEAHNLSIHLLNIINDILDIAKIEAGKMELTYAPVKLNELFSDVESFMRPQAEMRN 428

Query: 667 IRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAAR 714
           +  ++         +  ++ QRLLQ+   +L NA+ F+ +G   +          L+  +
Sbjct: 429 LSFRMQMPATSDEIIVQSNYQRLLQVMLNLLGNAIKFTHEGGVTVSADLVLKKSKLQDQQ 488

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             G     V + G  +  D    +F  F  V  +   Q  G GLGL+I +  +   GG V
Sbjct: 489 FPGLVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLVEAMGGEV 548

Query: 773 SISSSDEGV-TTINCRIP 789
              S  EG+ +T+   +P
Sbjct: 549 HFYSLGEGLGSTVTFTVP 566


>gi|225017546|ref|ZP_03706738.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum
           DSM 5476]
 gi|224949696|gb|EEG30905.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum
           DSM 5476]
          Length = 487

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 129/234 (55%), Gaps = 11/234 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + +  ++++KN F+  VS+ELR+PLT I G+++ + +  +G L + + + +  IS  +  
Sbjct: 237 DEISNSEKLKNEFISSVSHELRTPLTAIQGWSETIMSMGVGDLETTK-KGMRVISNETGR 295

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKVISDGKL 677
           L ++V ++LD + +  G  KLN   +   D+L E++++  I T+      +  +  D ++
Sbjct: 296 LSDMVEELLDFSRIQDGRFKLNKDRM---DILAELEEAVLIYTEHAHREGKQFIYHDIEM 352

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             F+  DR R+ Q+F  I+ NA+ +S  G TV +KA  D+ + I +V + G  I E    
Sbjct: 353 LPFIFGDRNRIRQVFINIIDNALKYSDAGDTVTVKAEADDANIIITVSDTGCGIAEKDLP 412

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            V  +F        RRG G+GL++    +++H G + I  S+EGV TT+   +P
Sbjct: 413 LVKEKFYK--ANNTRRGSGIGLAVAVEIVSMHDGALEI-DSEEGVGTTVTITLP 463


>gi|330828385|ref|YP_004391337.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328803521|gb|AEB48720.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 905

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  LLKTS    L   Q+ Y++ I  S+  LL
Sbjct: 285 QEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTS----LTPSQTDYMQTIEKSARNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG ++L +    L D LNE    +    H+  + + +  D  +  ++
Sbjct: 341 GIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLRVDADVPDYL 400

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736
             D  RL Q+ + +  NA+ F+ +G+  +      +G+        +++ G  I ++   
Sbjct: 401 TGDPMRLQQVLTNLTGNAIKFTEQGNVDVHIEQTGSGNHKVRLNVQIRDTGIGISQEQQH 460

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +   S
Sbjct: 461 QLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFES 502


>gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1062

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+    R+E  L +  E+  +A+  K  F+ ++S+E+R+P+  IIG T L   +  GS  
Sbjct: 369 NLHGRRRSEEELRQAKESAEEANRAKGEFLANMSHEIRTPMNAIIGMTQLALDA--GSPE 426

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+  ++   S S+  LL ++NDILD + +DAG +++    + LN+L++ +    A+   
Sbjct: 427 EKRD-FIVKASRSAQSLLGIINDILDFSKIDAGRLEIETVPVSLNELISGLADVFASAAQ 485

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI 720
           +  I +    D  L + +A D  RL QI   ++SNA+ F+  G  V+   K A       
Sbjct: 486 DKGIELLFDVDASLPAALAGDPLRLRQILQNLISNALKFTPAGEVVVRVEKVAELASGVA 545

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV++ G  I  +    +F  F        R+  G GLGL+I +  + L GG + + S
Sbjct: 546 CRFSVRDTGIGIAAEQLPRLFQSFFQTDSSVTRKYGGTGLGLAISKRLVELMGGRIGVDS 605


>gi|307152733|ref|YP_003888117.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306982961|gb|ADN14842.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1751

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 21/245 (8%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--------------TSKLGSLNSKQSQ 608
            R+ D +K  F+  VS+ELR+PLT+++GFT L++               +++     K  Q
Sbjct: 1495 REVDRMKTEFLATVSHELRTPLTSVLGFTSLIQEKLEEVIFPAISSDETRVKKARKKVGQ 1554

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             ++ I + +  L  L+ND+LD+A ++AG M+ N  +  + ++L     S AT    +  +
Sbjct: 1555 NIKIIISEAERLTALINDVLDIAKMEAGRMEWNIKSTSVVEILETA--SAATYPLFDKKK 1612

Query: 669  IKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            I +I D  L   +   D+ R++Q+   +LSNA+ F+ +GS V   A  ++   + S+ + 
Sbjct: 1613 IDLIKDFPLNLPNIWVDKNRMIQVVINLLSNAVKFTDEGS-VTCCAKLEDDQLVISITDT 1671

Query: 727  GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I E+    +F RF    N    +  G GLGL I +  +  HGG + + S+    +T 
Sbjct: 1672 GIGIAENEQSKIFERFQQGGNILTDKPTGTGLGLPICKQIVEYHGGKIWVISAPHQGSTF 1731

Query: 785  NCRIP 789
               +P
Sbjct: 1732 FFSLP 1736


>gi|261406259|ref|YP_003242500.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261282722|gb|ACX64693.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 484

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622
           +++++K+ F+  +S+ELR+PLT+I G+++ L +   G  + ++++  ++ IS  +  L+ 
Sbjct: 240 RSNQVKDDFISSISHELRTPLTSIKGWSETLDS---GGYDPEETKIGMQIISKETDRLIG 296

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + +    MKL    + L +LL E+  ++ TK  +  ++IK+ SD K      
Sbjct: 297 LVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESDEK-PIIYG 355

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+F  I+ NA+ FS +   + L  A +    I +V+++G  I ++  + V +RF
Sbjct: 356 DVNRLKQVFLNIVDNAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGISDEHLRRVKDRF 415

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              N   G   G GLGL+I +  + LHGG + + S     T +  ++P  E
Sbjct: 416 FQVNPLNG---GTGLGLAITQQLVELHGGTMEMESELGHGTAVIVKLPLPE 463


>gi|66816437|ref|XP_642228.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74856713|sp|Q54YH4|DHKB_DICDI RecName: Full=Hybrid signal transduction histidine kinase B
 gi|60470115|gb|EAL68095.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1969

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 192/410 (46%), Gaps = 61/410 (14%)

Query: 413  IWMFENLTVQVDL------ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            I MF  +   VDL      E++  +L ++  E +        V   DG I  +NPAF S+
Sbjct: 808  ILMFYTILSSVDLKEIERKESRIQSLFRISNEAL--------VVHKDGLITDANPAFESM 859

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-----QGTLEL- 520
            ++ +   L               Y  +S  W+   A+   F+     L      G +E  
Sbjct: 860  FQIKLQDL--------------LYPIQSGIWEFLPALEGMFEPGASKLFDNPDMGVIETT 905

Query: 521  -LSDSVLEYSIIPLPNAQTM----LTFVNVTDSVRAERALTEKNEALRKAD---EIKNSF 572
             +  S   + +    N  T     +  +++ D +   + L E + ALRKA+   E K  F
Sbjct: 906  GIDSSGRTFQVEVRTNKATYDGEPVDVISIID-ITGRKQLMEADYALRKAEAANEAKVIF 964

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            +  VS+ELR+P+  ++   D+L+ +   +L+S Q +++  I  S   LL+L+NDILD + 
Sbjct: 965  LTTVSHELRTPINGVLASADILERT---TLDSTQKEFLNCIKLSGNYLLDLINDILDYSK 1021

Query: 633  VDAGIMK-LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            ++AG M+ + Y   +L  L N ++  ++  ++E  + + +  D  +   V  D++R+ QI
Sbjct: 1022 IEAGKMEIIKYDFSILKMLDNSIR-IVSKNIYEKGLDLCIFIDPNVPVIVNGDQRRIKQI 1080

Query: 691  FSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VS 744
                LSN++ F++ G  +I +K   D+       F V+++G  I  +    +F  F  + 
Sbjct: 1081 LLNFLSNSIKFTNHGQIIIRVKLESDDSTHSLIKFDVEDSGIGIKTEHLNQLFASFSQID 1140

Query: 745  NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-----TINCRIP 789
            + +  + +G GLGLSI +    + GG V +  S+ GV      TI C IP
Sbjct: 1141 SGNSRKYQGTGLGLSISKRLCKMMGGDVKV-KSEFGVGSTFSFTIPCGIP 1189


>gi|153868269|ref|ZP_01998285.1| sensor histidine kinase/response regulator [Beggiatoa sp. SS]
 gi|152144410|gb|EDN71714.1| sensor histidine kinase/response regulator [Beggiatoa sp. SS]
          Length = 221

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  A+  K   L  A   K+ F+ ++S+ELR+PL +++    LL  +K G+L  KQ  Y 
Sbjct: 6   ARAAIEIKANELELARGYKSEFLANMSHELRTPLNSLLILAQLLGNNKSGNLTDKQVSYA 65

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I ++ + LL L+NDILDL+ V+AG M++N   + L+DL+  ++Q       E  +   
Sbjct: 66  QTIQSAGSDLLTLINDILDLSKVEAGKMEVNIEAVSLSDLMETLEQKFRPLTQEKGLAFH 125

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
           +     L + +  D QRL QI + +LSNA  F+++G   +  +     D+I  SV + G 
Sbjct: 126 IHQADNLPALLQTDAQRLKQILNNLLSNAFKFTTEGEIKL--SLNPKSDWIAISVIDTGI 183

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            IP+D  + +F  F       +RR +  G  ++  F+N
Sbjct: 184 GIPQDKQQQIFEAFQQVDGTTRRRHLRPGPRVI-YFLN 220


>gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 791

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 133/259 (51%), Gaps = 11/259 (4%)

Query: 542 FVNVTDSVRA--ERALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           F  +  ++R   ER    K+ A R      +A+  K++F+ ++S+ELR+PL  IIG++++
Sbjct: 254 FNTMAQTIRGQIERLEQAKDHAQRLQFVAEEANRAKSNFLANMSHELRTPLNAIIGYSEI 313

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+        +   + ++ I  S   LL L+NDILDLA +++G +++    I L  LL++
Sbjct: 314 LQEECEDLGQTAMIEDLDRIRLSGRHLLTLINDILDLAKIESGKVEILPEEISLPQLLHD 373

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712
           V+ ++   + +N  R+ + S   L + ++D  RL QI   +LSNA  F+  G  T+ ++ 
Sbjct: 374 VRSTVDPMIIKNENRLVIESAAGLLTMISDETRLRQILVNLLSNAAKFTEHGRITLRVQP 433

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           + + G   FSV +NG  +       +F  F        R+  G GLGL++      L GG
Sbjct: 434 SEEEGWIDFSVHDNGIGMSNAQLSRLFQPFTQADASTTRKYGGTGLGLALSRRLAQLLGG 493

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S     +T +  +P
Sbjct: 494 DIRVQSELGVGSTFSVHLP 512


>gi|296086775|emb|CBI32924.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 136/264 (51%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 164 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 223

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS++L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 224 ---TPEQRLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIK 280

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + +       L  F V D +RL+QI   ++ NA+ FS++G+  I       ++
Sbjct: 281 PIASVKKLFVSSSLAPDLPEFAVGDEKRLMQIMLNVVGNAVKFSNEGNISIFAFIAKSES 340

Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD+   DF              VK++G+ I P+D+ K +F +F        R   G GL
Sbjct: 341 LRDSRAPDFFPVHSDNHFYLRVQVKDSGAGIDPQDISK-LFTKFAQCQSLAARNSGGSGL 399

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL GGH+ I S   G
Sbjct: 400 GLAICKRFVNLMGGHIWIESEGLG 423


>gi|150008033|ref|YP_001302776.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|149936457|gb|ABR43154.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
          Length = 622

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 134/250 (53%), Gaps = 8/250 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ +    E +L E       AD++K+ ++  +S+E+R+PL  I GF++L+        +
Sbjct: 380 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 436

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y  + +++L++ +  S   ++ 
Sbjct: 437 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 495

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +++ +  +     F  D  RLLQ+ + +++NA+  + +GS  +    + +    F V
Sbjct: 496 PGGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYV 555

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I ++  K VF+RFV  N +     G+GLGL+I +  +   GG + ++S     +
Sbjct: 556 RDTGIGIDKEKLKDVFDRFVKINDY---MEGIGLGLAICKGLVVKMGGSIHVTSELGVGS 612

Query: 783 TINCRIPSKE 792
             +  +PS E
Sbjct: 613 EFSFILPSHE 622


>gi|83765603|dbj|BAE55746.1| unnamed protein product [Aspergillus oryzae]
          Length = 2341

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 37/263 (14%)

Query: 552  ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL +  EA +KA                  + K+ F+ ++S++LR+P+  +IG ++LL
Sbjct: 1858 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1917

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +KL   + +Q +YVE I   +  LL L+NDILD + ++AG MK++   + + + ++EV
Sbjct: 1918 KATKL---DKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1974

Query: 655  KQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708
             +++     +  +       KV  D  +   + D  RL QIF  +LSN+  F+ KGS TV
Sbjct: 1975 VRALRYTHRDRGLETIEDLEKVPPDLVV---LGDPVRLHQIFMNLLSNSYKFTPKGSVTV 2031

Query: 709  ILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVE 762
              +  R+    I    SV + G  IPE+    +F  F S A     R   G GLGLSI +
Sbjct: 2032 RARVTREGKGRIRLECSVSDTGIGIPEEQKSRLFRPF-SQADSSTARSYGGSGLGLSICK 2090

Query: 763  SFI-NLHGGHVSISSSDEGVTTI 784
            + I ++ GG + + S+    TT+
Sbjct: 2091 AIIEDVLGGAIWLDSTPGVGTTV 2113


>gi|218531747|ref|YP_002422563.1| Hpt sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218524050|gb|ACK84635.1| Hpt sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 909

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  ++  +A+  K+ F+  +S+E+R+P+  ++   +LL ++ L     +Q +Y + I+
Sbjct: 259 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL---PPRQQRYAQVIA 315

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD A V+AG +++    +   D+ + V    A +     + +    D
Sbjct: 316 RSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSAGLDLAAQID 375

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF--SVKNNGSSI 730
           G +  S + D  RL Q+    +SNA+ F++ G  ++ ++  R+    +   +V + G  I
Sbjct: 376 GDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEREASGPVLRIAVFDTGIGI 435

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+D    +F  F        RR  G GLGLSI E  I   GG V + S     +T   RI
Sbjct: 436 PQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIVAMGGRVGVESRLGEGSTFWARI 495

Query: 789 P 789
           P
Sbjct: 496 P 496


>gi|169830118|ref|YP_001700276.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
 gi|168994606|gb|ACA42146.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
          Length = 916

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 131/256 (51%), Gaps = 15/256 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A++ L E  E L      K+ F+ ++S+ELR+PL +I+  +++L  +    L  +++++
Sbjct: 486 KAKQELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENSQDHLTDEETEF 545

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I +S   LL L+NDILDL+ V+AG + + ++ + ++++  +++ + A    + NI  
Sbjct: 546 AKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKKNIDF 605

Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----------KAARDNGD 718
            +  +D  +  F  D +R  QI   +LSNA  F+  GS  +              +D  D
Sbjct: 606 HISKADHVVDVFYTDEKRFQQIIKNLLSNAFKFTEHGSVTLAINQLAQSQLTSNMQDISD 665

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                +V + G  IP+D  + +F  F        R+  G GLGLSI + F  L GG +++
Sbjct: 666 DWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITL 725

Query: 775 SSSDEGVTTINCRIPS 790
            S +   ++    IPS
Sbjct: 726 QSEEGQGSSFTLTIPS 741


>gi|153810969|ref|ZP_01963637.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174]
 gi|149832857|gb|EDM87940.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174]
          Length = 469

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L +  E +  F+ ++S++ RSPLT+I G+ + +    +      Q +Y++ IS  +  
Sbjct: 237 DKLNRNGEYQRQFISNISHDFRSPLTSIKGYVEAMIDGTIPV--EMQEKYLKIISYEAER 294

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L   +L L  +D     L+     +N ++     S        NI +++I  GK   
Sbjct: 295 LEKLTRGLLTLNELDIQKRMLHIQPFDINSVIKATAASFEGSCTSRNILLELILSGKELM 354

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +++ Q+   +LSNA+ FS   ST+ L+    NG    SVK++G  IP+   + ++
Sbjct: 355 AQADMEQIQQVLYNLLSNAIKFSPDNSTITLETTEKNGKIFVSVKDHGIGIPKASLQKIW 414

Query: 740 NRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            RF   +  RG+ ++G GLGL+IV+  ++ HG H+++ S+ EGV T
Sbjct: 415 ERFYKIDRSRGKDQKGTGLGLAIVKEILHAHGQHINVIST-EGVGT 459


>gi|153854045|ref|ZP_01995378.1| hypothetical protein DORLON_01369 [Dorea longicatena DSM 13814]
 gi|149753427|gb|EDM63358.1| hypothetical protein DORLON_01369 [Dorea longicatena DSM 13814]
          Length = 899

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 147/271 (54%), Gaps = 8/271 (2%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPL 584
           E  + P  N+  +        ++  E+   EK EA  L K ++++ + ++ +S++LR+PL
Sbjct: 627 EIPLDPFENSILLSILGECALALENEKNAREKQEAAILAKNEQLRANLLRAISHDLRTPL 686

Query: 585 TNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           T+I G  ++LL  S     ++K+  Y++ I   S  L+NLV ++L +  ++ G + L  +
Sbjct: 687 TSISGNASNLLSNSDSFDNDTKKQLYMD-IYDDSMWLINLVENLLAVTRIEEGRLNLRIT 745

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +++D++ E    I  K  E++I ++   +  L     D + ++Q+   I+ NA+ ++ 
Sbjct: 746 EDLMDDVITEALHHINRKSEEHHISVESKEEFLLAKM--DAKLIVQVIINIVDNAIKYTP 803

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           K S ++++  +     I S+ ++G+ I +++   +F+ F S A++    RR +GLGLS+ 
Sbjct: 804 KNSHIVIRTEKRGKQAIVSISDDGNGIADEIKPRIFDMFYSGANQIADSRRSLGLGLSLC 863

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +S IN HGG +++S +    T     +P+ E
Sbjct: 864 KSIINAHGGELTVSDNLPHGTVFTFTLPAGE 894


>gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56']
          Length = 961

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 121/252 (48%), Gaps = 15/252 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEAL-----------RKADEIKNSFVQHVSYELRSPLTNIIG 589
           +F+ +T+ V AER   E+ + L            +   +K+ FV  +S+ELRSP+  I+G
Sbjct: 521 SFMGITEDVTAERLAEEERQKLLESERAARDEAERVSRVKDDFVATLSHELRSPINAILG 580

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +  +L+           ++ +E I  ++ +  ++V+++LD++ + +G ++L+   + L  
Sbjct: 581 WARILRGR--APEPPTLARGLEVIERNARLQADMVSELLDMSRIVSGKLRLDVQPVDLPS 638

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++    ++I        I +    D +  S   D  R+ Q+   +LSNA+ F+  G  + 
Sbjct: 639 VIRSALEAIQLAAETKGIAVASSIDPEASSLRGDPARIHQVVWNLLSNAVKFTPPGGRID 698

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           +   R       SV + G  I       +F RF        R+  G+G+GLSIV+  + L
Sbjct: 699 VALRRAGAHAALSVTDTGMGIAPQFLPHLFERFRQADASSTRKHGGLGIGLSIVKHLVEL 758

Query: 768 HGGHVSISSSDE 779
           HGG V ++S  E
Sbjct: 759 HGGTVEVASQGE 770


>gi|317489065|ref|ZP_07947590.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|316911797|gb|EFV33381.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
          Length = 562

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 142/282 (50%), Gaps = 20/282 (7%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           ++I  F+D    L+G  E L   V E ++  L  A  +L         R    L + N  
Sbjct: 267 SLIAGFNDMAGELRGMYEHLESQVQERTV-DLREANALLE--------RQRDKLEQLNAD 317

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +  + K+  +  V++ELR+PLT+II F  + + +     N    +  E I  +S ILL
Sbjct: 318 LAQETQFKSDLLSMVNHELRTPLTSIITFAQISREA-CDPANEHDRRSWEEIEKNSRILL 376

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGS 679
           N++N++LD+A  DAG M+     + L D+   VK ++A   + +E +   KV SD  L +
Sbjct: 377 NMINNMLDIARSDAGGMRATCEPMDLGDVAASVKGTMAPLARKYEVSFSTKVASDVPLVN 436

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI-PEDMCK 736
              D ++  ++   + SNA+ F+  G ++ L+ A D    +   S+ ++G  I PED  +
Sbjct: 437 --GDYEKTTRMLENLASNAIKFTPDGGSIELRVAYDAEARVVTLSMVDDGIGIAPEDQAR 494

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F RFV       R+  G GLGL++V  + ++ G  VS+ S
Sbjct: 495 -IFERFVQVDSTSTRKYNGSGLGLALVREYGDMQGFAVSVES 535


>gi|302337894|ref|YP_003803100.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301635079|gb|ADK80506.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 727

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 136/264 (51%), Gaps = 20/264 (7%)

Query: 530 IIP-LPNAQTMLTFVNVTDSVRAE-RALTEKN----EALRKADEIKNSFVQHVSYELRSP 583
           +IP LP    +    N  D +R + + L E+N    + L +A+  K+ F+ +VS+E+R+P
Sbjct: 189 LIPELPGEHPLSELYNALDVMRHDLQQLDEQNRDAMQRLEEANRAKSDFLANVSHEIRTP 248

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIG  +LL+ +   +LN +Q  +++ +  SS  L++ VND+LDL+ ++ G M +   
Sbjct: 249 LGGIIGAAELLQNT---ALNDEQQHFLQILQGSSEALMSGVNDVLDLSKLEQGAMAIVPR 305

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFS 702
              L+ LLN +      +  +  + + +  +  +   ++ D  RL QI   +L NA+ F+
Sbjct: 306 PTNLSALLNGIATIFRPRCRKKGLELFLTCEADEKQEYLVDPIRLRQILMNLLHNALKFT 365

Query: 703 SKGSTVI----LKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752
             GS  +        +++G+ +    FSV++ G  IP++  +++F +F  + N       
Sbjct: 366 PTGSIRLDCRSKGIQKEDGELMYRHDFSVQDTGIGIPQEKIETIFEKFTQIHNTEVQNFG 425

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL I    +   GG + + S
Sbjct: 426 GSGLGLHIAAVLVAKLGGTLEVVS 449


>gi|296446361|ref|ZP_06888306.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296256134|gb|EFH03216.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 750

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 9/246 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           AE+   +K EA   A+  K+ F+ ++S+ELR+PL  IIGF+++++    G+L S K  +Y
Sbjct: 500 AEQYHLQKGEA-EAANLAKSQFLANMSHELRTPLNAIIGFSEMMQAQVFGALGSPKYVEY 558

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             +I      LL+++ DILD++ ++AG ++L  S I L+       +   ++       I
Sbjct: 559 CSHIHQGGRYLLDVLTDILDMSRLEAGRVRLEESEIDLSGAARATAER--SRRAAEAKGI 616

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++I D + G     D   +++  + ++SN++ F++ G  V L+A R     +  V++ G 
Sbjct: 617 ELIVDAREGLRCCGDHDAIVKAIAVLVSNSLKFTAAGGCVRLRARRSYRAVLIFVEDTGC 676

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I      ++   F   A       +G GLGL+I  S + LHGG + I S   GV TI  
Sbjct: 677 GIDARAVAALGRPFEQPATVMENGMKGSGLGLAIARSLMALHGGSLRIRSR-VGVGTIAM 735

Query: 787 -RIPSK 791
            RIP+K
Sbjct: 736 LRIPAK 741


>gi|288870015|ref|ZP_06112594.2| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288868794|gb|EFD01093.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 975

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 135/275 (49%), Gaps = 23/275 (8%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEK--NEAL---RKADEIKNSFVQHVSYELRSPLTN 586
           P  +    +  V   D +R E+A  E+   +AL   + A   K+ F+  +S+++R+P+  
Sbjct: 417 PFNDDVLTICLVKFLDELRQEQARQEQLLRDALASAQAASRAKSDFLSRMSHDIRTPMNA 476

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYV----EYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           IIG       S +G +    S+ V    + I  SS  LL+L+NDILD++ ++   M++ +
Sbjct: 477 IIGM------STIGQIKLHDSRTVKDCFQKIDTSSKYLLSLINDILDMSRIETDKMEIAH 530

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
                   + E+ Q I  +  E  I  ++     L S ++ D  R+ QI   +LSNA+ F
Sbjct: 531 DLFDFRAFVEEINQIIYPQTLEREIAYEMRHLEPLESHYIGDSLRMKQILMNLLSNALKF 590

Query: 702 SSKGSTV---ILKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           +  G +V   I +  R NG  +I F +++NG  + E+    +F  F   A    R   G 
Sbjct: 591 TQPGGSVSVDIAEEKRTNGYAYIKFVIEDNGIGMSEEFMDRLFQPFEQEAPGNARNNVGS 650

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSIV S + L GG +S++S  +  +     +P
Sbjct: 651 GLGLSIVYSLVQLMGGTISVTSHKQEGSRFTVTVP 685


>gi|253575383|ref|ZP_04852721.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845380|gb|EES73390.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 469

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++  + +  F  ++S+ELR+P+T + G+  +LK  +L     ++ +Y++ I   +  L 
Sbjct: 234 LQRYRDTRQEFFANISHELRTPITYLEGYAQVLK-KRLYETEEEKDKYLDIIHEEAMRLQ 292

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +LV+D+ DLA ++ G + L+   I L ++ +   Q I  K  E N+ ++   +  +    
Sbjct: 293 HLVDDLFDLAKMEEGKVSLSLEWIDLAEITDNAVQKIKLKAGEKNLSLQTKINSNIPLIY 352

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D  R  Q+   +L NA+ ++ KGS V+      N  FI+ +V++ G  IPED    +F+
Sbjct: 353 GDGLRTEQVLLNLLENAVRYTEKGSIVV--ELDQNRSFIYIAVEDTGMGIPEDEIPYIFD 410

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF  V  +   Q  G GLGL I +  + L GG + + S
Sbjct: 411 RFYRVEKSRSRQYGGTGLGLPIAKKLVELQGGELKVFS 448


>gi|227356090|ref|ZP_03840480.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
 gi|227163735|gb|EEI48647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
          Length = 919

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 132/255 (51%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+++  V+ ER+L     A  +A++ K+ F+  VS+ELR+PL  IIG  +LL++ 
Sbjct: 416 AICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSL 475

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              + N + ++ ++ +  SS++LL +++DILD + +++  +K++        +++ V  +
Sbjct: 476 ---TQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISN 532

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + + ++ I    +  +   V  D  R+ Q+ S +L+N++ F++ G  + L   RD 
Sbjct: 533 YLPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-CITLHLYRDE 591

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               F + + G  I E M   +F  F  VS        G GLGL+I E  INL  G +S+
Sbjct: 592 YYLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISV 651

Query: 775 SSSDEGVTTINCRIP 789
            S +   +    RIP
Sbjct: 652 VSQENVGSRFTVRIP 666


>gi|221640855|ref|YP_002527117.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221161636|gb|ACM02616.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 849

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 41/421 (9%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           W++ +   +       +      GQ L ++      G  + +  ++T Q+ L        
Sbjct: 153 WRQRMIRRWDEDPVEPEIVRRATGQWLRLVNRRARDGDMVSLLIDITEQMRLRA------ 206

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYY 491
                 ID + +G  +F    R+ L N  +R+++      L PG     I         +
Sbjct: 207 -----AIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQF 261

Query: 492 NESDG----WDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTF 542
            E+ G    W   A  + +F    + L G  E   D      V+E+     P+   +   
Sbjct: 262 PEAAGREEEW--LADRLAAF----RHLGGAAEQQLDDGRWLRVIEHET---PDGGRVGLG 312

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+  R + AL     A   A   K++F+ ++S+E+R+P+  I+G  DLL  +    L
Sbjct: 313 VDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET---VL 369

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q  + E I +S   LL ++NDILD + ++A  + L+     L   ++EV   +  K 
Sbjct: 370 TEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKA 429

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
               I + +  D  L + FV D  RL Q+ + ++ NA+ F++ G  +I    L+ A    
Sbjct: 430 RAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRH 489

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           D   +V++ G  I  +    VF  F        RR  G GLGL+I    I L  G V + 
Sbjct: 490 DLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVE 549

Query: 776 S 776
           S
Sbjct: 550 S 550


>gi|158334651|ref|YP_001515823.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304892|gb|ABW26509.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 504

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+E     + A E +  FV +VS+ELR+PLT + G+   ++  +  +L   Q + +E  +
Sbjct: 265 LSEAWHEQQHATERQREFVGNVSHELRTPLTIVRGYLQSIQ-RRGDNLTEMQREALEIST 323

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A + + + L+ D+L LA  D G M  +  T++LND+  EV  ++A K ++  I ++   +
Sbjct: 324 AEANLTIQLLQDLLCLARADDGYMPYHLETLILNDVAVEVV-NMADKFNQRQIDLEF--E 380

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD +RL Q+   ++ NA+ +S+    V +K  +     +  V + G  IP   
Sbjct: 381 SPLIPVFADAKRLQQVLVNLVENAIKYSATTEPVTVKLEQREDSALIHVCDRGDGIPLKQ 440

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F RF  +  A      GVGLGLS+V++F    GG VS+ S++   +T    +P
Sbjct: 441 QSRIFERFYRLDEARARCTGGVGLGLSLVKTFTEGMGGQVSVLSAEGEGSTFTVTLP 497


>gi|90021885|ref|YP_527712.1| sensor/response regulator hybrid [Saccharophagus degradans 2-40]
 gi|89951485|gb|ABD81500.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 942

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A  +K+ F+ + S+E+R+PL  I+GF++LL+ ++L   N++Q  Y+  I  S+  LL +
Sbjct: 267 QASRVKSEFLANTSHEIRTPLNGILGFSELLRKTEL---NNQQVDYLTTIEESAKGLLTI 323

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILD + ++ G + L Y  + +  L+ +  +      +E NIR+  I D  +  + + 
Sbjct: 324 INDILDFSRLEIGTLTLEYKPVKIRQLIEDTLKLQTPAANEKNIRMLTIIDHDVPENLLG 383

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKS 737
           D  RL Q+ S ++SNA+ F+  G  ++L  ++D          F V ++G  + +D  + 
Sbjct: 384 DPLRLKQVLSNLVSNAIKFTDVG-YILLGVSKDQSSENQFTLKFRVTDSGIGLSQDQQER 442

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F+ F  + ++      G GLGL+I +  ++   G + + S+
Sbjct: 443 LFDPFTQLDSSESRLHGGTGLGLAIAKGLVDRMNGTIGVEST 484


>gi|332991838|gb|AEF01893.1| aerobic respiration control sensor protein ArcB [Alteromonas sp.
           SN2]
          Length = 785

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +A     KA   K  F+  +S+ELR+PL  I+G + +L+ ++L   N +Q  +
Sbjct: 267 RDMTERKQAENAAAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL---NEEQFSW 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I AS+  L N+ NDI+DL  +D   ++L+  T+ L D   E+   I     +  + +
Sbjct: 324 VSTIYASAITLGNIFNDIIDLDKLDRDKVELSLKTVSLRDFTEELSSIIRLLAGDKQLEL 383

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--FI-FSVK 724
           K      L   V  D  RL QI   IL NA+ F+ KG   + ++A +   D  F+ F ++
Sbjct: 384 KTTIKEPLPRLVEVDGTRLRQILWNILFNAVKFTQKGHVSLSIEATKPENDVAFVTFVIE 443

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IPE+  + +F  +    H   +   G G+GL+I +  ++L  G++ ++S     T
Sbjct: 444 DTGVGIPEEEIEKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMKGNIKVTSVVGKGT 503

Query: 783 TINCRIP 789
                +P
Sbjct: 504 RFEIELP 510


>gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
 gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
          Length = 946

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 437 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 496

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 497 ---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISAN 553

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  ++    +  
Sbjct: 554 YLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIIL--HVQCA 611

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++  SV++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G ++
Sbjct: 612 GDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIA 671

Query: 774 ISSSDEGVTTINCRIP 789
           + +     +    RIP
Sbjct: 672 VETEPGMGSRFTIRIP 687


>gi|283850562|ref|ZP_06367850.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574133|gb|EFC22105.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1231

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 15/255 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A R +  K   L  A   K+ F+ ++S+ELR+PL +++     L+ +  G L+  + + 
Sbjct: 535 KARRDVERKAADLETASRYKSEFLANMSHELRTPLNSLLLLARNLRDNGSGRLDPDEVEA 594

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  +   LL L+NDILDL+ V+AG + L+  ++ L D+   +            I +
Sbjct: 595 AGIIYRNGNDLLMLINDILDLSKVEAGKLSLHLESVPLADVAGSIMADFGHVAEGKGISL 654

Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN--------G 717
              I +G   +   DR+RL QI   ++SNAM F+  G  V+   L  A D         G
Sbjct: 655 HHEIGEGLPQAIRTDRRRLEQILRNLVSNAMKFTETGGVVLRLHLADAADGRPSSRGAAG 714

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           D + FSV + G  I  D  +++F  F        RR  G GLGLSI      L GG V++
Sbjct: 715 DMVAFSVIDTGIGIAADKHQAIFEAFQQVDGTSSRRYGGTGLGLSITRELARLLGGRVTL 774

Query: 775 SSSDEGVTTINCRIP 789
           +S     +T    +P
Sbjct: 775 ASQPGRGSTFTFLVP 789


>gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
 gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
          Length = 1342

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 591 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 647

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 648 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 707

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 708 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 767

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 768 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 827

Query: 775 SSSDEG 780
             S+EG
Sbjct: 828 -HSEEG 832


>gi|83646938|ref|YP_435373.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634981|gb|ABC30948.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 874

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 12/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+    ++ D +KN F+  VS+ELR+PLT+I G   LL    +G    + S++++ 
Sbjct: 623 RDITER----KRVDRMKNEFISTVSHELRTPLTSITGALSLLLNGAVGQPTEEFSRFLQI 678

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM---HENNIRI 669
              +S  L  L+ND+LD+  + AG +K ++S   +  ++  V+QSI T      ++ +  
Sbjct: 679 AYKNSQRLALLINDLLDMEKITAGGVKYSFS---VEPVMPLVEQSIDTNRVYGQQHEVEY 735

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K+I          D  R  QI +  LSNA  FS +G TV +   R       SV + G  
Sbjct: 736 KIIHREDASLINVDPLRFQQILANFLSNAAKFSPQGCTVDISVQRRENYVRISVTDRGPG 795

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    +F +F    ++ R Q+ G GLGL I         G +   S      T    
Sbjct: 796 IPPEFYTRIFKKFSQADSSDRRQKGGTGLGLFISRELAKGMRGRIDFESEVGKGATFYVE 855

Query: 788 IP 789
           +P
Sbjct: 856 LP 857


>gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 714

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 6/216 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K D +K+  +  VS+ELR+PL++I+GF +LL+  +      K ++YVE +   +  L N
Sbjct: 480 QKMDHVKDELISTVSHELRTPLSSILGFMELLRYRQ--PTPEKTTRYVEIVHEEAKRLTN 537

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND LD+  ++ G     +    L  LL E  ++       + I    ++D       A
Sbjct: 538 LLNDFLDIQRMEGGKQDYAFKPFSLRQLLEETIETFGETAETHTIH--AVTDDDPILIFA 595

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  ++ Q+   +LSNA+ +S     + ++  +     I SV + G  IP      +F +F
Sbjct: 596 DEDKVKQVIINLLSNAIKYSPAADHIDVRLEKTADQAILSVTDYGIGIPPTAFDKLFTKF 655

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V N+   +  G GLGL+I +  I  HGG +S+ S
Sbjct: 656 YRVDNSAVRKIGGTGLGLAICKEIIESHGGAISVES 691


>gi|298247425|ref|ZP_06971230.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550084|gb|EFH83950.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 624

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 176/382 (46%), Gaps = 56/382 (14%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +H+++GV +   +G I   N A    R L + E+N      H + I A            
Sbjct: 250 EHIADGVMLMDVNGCILRENQAARHIRELLQDEQN------HRQEITA------------ 291

Query: 498 DLFAAIITSFDDERKSLQGTLELL----SDSVLEY------------SIIPL-PNAQTML 540
            L A  I S   ER+ L  T+  +    S+ V EY            SI+P+ P  +T +
Sbjct: 292 -LLAGPIQSATTERRDLNFTVTAVVNTSSNEVREYMVNVSPLHLPKASIVPMHPRNRTTM 350

Query: 541 TFVNVTDS----VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF--TDLL 594
              ++  S    V  +   T +  A  +A+++K+ F+   ++ELR+PL  + GF  T L+
Sbjct: 351 EEQSLMASGAVVVWHDVTETRRLMAYAEAEQLKDEFITIAAHELRTPLAVLKGFAQTLLV 410

Query: 595 KTS--KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +T+  K   L   Q + ++ I  +++ +++L +D+LD+A + AG + L++  + L  LL 
Sbjct: 411 QTARGKGAELAEWQVEALQNIDQATSRMVDLASDLLDVARLQAGSLLLHFEPVDLIALLK 470

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVAD--RQRLLQIFSKILSNAMDFSSKGSTVIL 710
            V   +      + + + + +D     FV D  +QR+ Q+ + I+ NA+ +S  G  + +
Sbjct: 471 RVVTRLQVTTECHTLTLHIFTD----HFVVDIDQQRIEQVLTNIIGNAIKYSPLGGVIQI 526

Query: 711 KA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINL 767
              A+     + SVK+ G  IPE     +F RF+   NA      G GLGL +    +  
Sbjct: 527 DVDAQQQNTVLVSVKDTGIGIPEQQQGQIFGRFMRADNALNEGIAGTGLGLYLCRELVER 586

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGGH    S +   +T     P
Sbjct: 587 HGGHTWFESMEGEGSTFYLSFP 608


>gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1090

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 130/267 (48%), Gaps = 37/267 (13%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  +AE AL +  EA   A+  K+ F+  +S+ELR+PL  I+GFT +++  +  +LN
Sbjct: 569 DITERQQAEEALKQAKEAADAANRAKSEFLASMSHELRTPLNAILGFTQVMRRDR--TLN 626

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  Q +  IS S   LL L+NDIL+++ ++AG    + ++  L  LL+ ++  +  K  
Sbjct: 627 PEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQ 686

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD 718
           E  +++      ++  ++  D  +L Q+   +L NA+ F+ +G  V L+   +     G 
Sbjct: 687 EKGLQLIFERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEEGG-VTLRVKSEVRSRKGG 745

Query: 719 F----------------------------IFSVKNNGSSIPEDMCKSVFNRF-VSNAHRG 749
           F                             F V+++G  I  +    +F  F  +   R 
Sbjct: 746 FRESATLRTIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQ 805

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776
            + G GLGL I   F+ L GG++S+SS
Sbjct: 806 AQEGTGLGLPISRKFVQLMGGNISVSS 832


>gi|239994514|ref|ZP_04715038.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii ATCC 27126]
          Length = 784

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 13/234 (5%)

Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +A     KA   K  F+  +S+ELR+PL  I+G + +L+ ++L   + +Q  +
Sbjct: 267 RDMTERKQAENAAAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL---SEEQFNW 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I AS+  L N+ NDI+DL  +D   ++L+  TI L D   E+   I     +  + +
Sbjct: 324 VSTIYASAITLGNIFNDIIDLDKLDRDKLELSLKTISLKDFTEELSSIIRLLAADKQLEL 383

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVK 724
           K   +  L   V  D  RL QI   IL NA+ F+ KG  ++ + + + +GD     F ++
Sbjct: 384 KTTINEPLPRLVEIDGTRLRQILWNILFNAVKFTQKGHVSLTVSSTKPDGDKAYVTFVIE 443

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  IPE     +F  +    H   +   G G+GL+I +  ++L  G + +SS
Sbjct: 444 DTGVGIPESEIDKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMKGEIHVSS 497


>gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
 gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
          Length = 1331

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|91786469|ref|YP_547421.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91695694|gb|ABE42523.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1127

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 10/263 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q  L    +    R + AL    E    A++ K  +V  +++ELR+PL +I+G++ +L
Sbjct: 641 NRQNQLLSREIEAHQRTDAALQTAKELAEAANQAKTRYVAGMTHELRTPLNSILGYSQIL 700

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S+  +L +   + V+ I  S   LL LV+ +LDLA ++AG ++L  + + L D L+ +
Sbjct: 701 LKSE--ALANTPREAVQTIQRSGEHLLALVDGLLDLARIEAGRLRLEPTPLPLPDFLDGL 758

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +  +    ++       G++ ++V AD +RL QI   +LSNA+ F+  GS  +    
Sbjct: 759 VNMVRPQAEAKDVDFIYTHSGRMPAWVQADAKRLRQIIINLLSNAVHFTDTGSVTLHVDC 818

Query: 714 RDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769
           R      F V + G  I P+D  + +F  F   A  G+RR   G GLGL+I      L G
Sbjct: 819 RRE-VIRFDVVDTGIGIAPQDQ-QRIFLPFERGAA-GRRRGEPGTGLGLTITGLLTALMG 875

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G +S+ S     +T + R+  +E
Sbjct: 876 GDLSLQSEQGKGSTFSVRLYLRE 898


>gi|30263182|ref|NP_845559.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47528547|ref|YP_019896.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186032|ref|YP_029284.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|165868690|ref|ZP_02213350.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167632195|ref|ZP_02390522.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167637220|ref|ZP_02395500.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170684831|ref|ZP_02876056.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170704948|ref|ZP_02895413.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177650266|ref|ZP_02933267.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190564692|ref|ZP_03017613.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227813953|ref|YP_002813962.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229601422|ref|YP_002867446.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254685789|ref|ZP_05149648.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254723196|ref|ZP_05184984.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254738259|ref|ZP_05195962.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254742573|ref|ZP_05200258.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254752574|ref|ZP_05204610.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254761090|ref|ZP_05213114.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30257816|gb|AAP27045.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47503695|gb|AAT32371.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179959|gb|AAT55335.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164715416|gb|EDR20933.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167514727|gb|EDR90093.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167532493|gb|EDR95129.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129803|gb|EDS98665.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170671091|gb|EDT21829.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172084218|gb|EDT69277.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190564009|gb|EDV17973.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227004608|gb|ACP14351.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229265830|gb|ACQ47467.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 458

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E NI I+   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNIAIEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|329921992|ref|ZP_08277799.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328942452|gb|EGG38715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 484

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLN 622
           +++++K+ F+  +S+ELR+PLT+I G+++ L +   G  + ++++  ++ IS  +  L+ 
Sbjct: 240 RSNQVKDDFISSISHELRTPLTSIKGWSETLDS---GGYDPEETKIGMQIISKETDRLIG 296

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++LD + +    MKL    + L +LL E+  ++ TK  +  ++IK+ SD K      
Sbjct: 297 LVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESDEK-PIIYG 355

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+F  I+ NA+ FS +   + L  A +    I +V+++G  I ++  + V +RF
Sbjct: 356 DVNRLKQVFLNIVDNAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGISDEHLRRVKDRF 415

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              N   G   G GLGL+I +  + LHGG + + S     T +  ++P  E
Sbjct: 416 FQVNPLNG---GTGLGLAITQQLVELHGGTMEMESELGHGTAVIVKLPLPE 463


>gi|332653702|ref|ZP_08419446.1| sensory box histidine kinase [Ruminococcaceae bacterium D16]
 gi|332516788|gb|EGJ46393.1| sensory box histidine kinase [Ruminococcaceae bacterium D16]
          Length = 589

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 155/345 (44%), Gaps = 59/345 (17%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLW-------KTEENRLSPGTHIRNIAATCSRYYNES 494
           H+++GV  F  +G +  SNPA   +         T E        +  +       Y E 
Sbjct: 262 HMTDGVVAFSRNGEVIHSNPAAEEMLGRTITAEATYEELFGDLLSLEQVLQAPD--YLEE 319

Query: 495 DGWD---LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           + W+       ++  FD +R+   G L +L D                            
Sbjct: 320 ERWEGERFLQLLLAPFDRDRQG--GVLVVLHD---------------------------- 349

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              +T++    RK  +++  FV +VS+ELR+PLTNI  + + L  S      + + +++ 
Sbjct: 350 ---VTQQ----RKTQDMQREFVANVSHELRTPLTNIRSYAETLSDSAGELPPATEKKFLG 402

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYS----TIVLNDLLNEVKQSIATKMHENNI 667
            I   S  + ++V D+L L+  D+G  +L+       + + DL N V   +  + H++ +
Sbjct: 403 VILNESDRMTHIVQDLLTLSRFDSGKDELHLVRFPFDVAVQDLYNAVY--MEAQRHDHKM 460

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++++  D  L + VADR+R+LQ+   I+SN++ ++  G  +++ A R+       V ++G
Sbjct: 461 KLRLEPD--LPAVVADRERVLQVMMNIVSNSIKYTPNGGHILVSAGREGDRVWMQVDDDG 518

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
             IP      +F RF  V  A   Q  G GLGLSI +  ++ H G
Sbjct: 519 IGIPPKDRPRIFERFYRVDKARSRQSGGTGLGLSIAKEIVDRHEG 563


>gi|262381390|ref|ZP_06074528.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296567|gb|EEY84497.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 563

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 132/250 (52%), Gaps = 8/250 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ +    E +L E       AD++K+ ++  +S+E+R+PL  I GF++L+        +
Sbjct: 321 NIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTD 377

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y  + +++L++ +  S   ++ 
Sbjct: 378 EERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRV- 436

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +++ +        F  D  RLLQ+ + +++NA+  + +GS  +    + +    F V
Sbjct: 437 PGGVKLVLEKGADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDNQLRFYV 496

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I +D  K VF RFV  N +     G+GLGL+I +  +   GG + ++S     +
Sbjct: 497 RDTGIGIDKDKLKDVFGRFVKINDY---MEGIGLGLAICKGLVVKMGGLIHVTSELGVGS 553

Query: 783 TINCRIPSKE 792
             +  +PS E
Sbjct: 554 EFSFILPSHE 563


>gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
 gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
          Length = 1271

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 122/248 (49%), Gaps = 26/248 (10%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            + TD    E  L ++ +   +A   K+ F+ ++S+E+R+PL  +IGF++LL      + +
Sbjct: 779  DATDRKVYENTLKDQKDKAEQAGRAKSEFMANISHEIRTPLNAVIGFSELLSAR---AQD 835

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            SK + Y+  I  S   LL L+NDILD++ ++A   +   +   +  LL E+ +    +  
Sbjct: 836  SKAASYINSIKTSGKALLTLINDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTE 895

Query: 664  ENNIRIKVISDGKLGSFVA---------DRQRLLQIFSKILSNAMDFSSKGS---TVILK 711
              +I        KLG F+A         D  RL Q+   ++ NA+ F+ +G    +V  +
Sbjct: 896  HTDI--------KLGYFIAADTPKTMMLDISRLRQVLLNLIGNAVKFTERGEVSISVRCE 947

Query: 712  AARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            A  D   D   SVK+ G  IP++  + +F  F   A     +  G GLGLSI    +++ 
Sbjct: 948  AVNDERVDLYISVKDTGIGIPKEEMEDIFQAFRQRAGHNINKYGGTGLGLSISSKLVDMM 1007

Query: 769  GGHVSISS 776
            GG + + S
Sbjct: 1008 GGEIRVES 1015


>gi|260642003|ref|ZP_05414261.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623855|gb|EEX46726.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 862

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 126/240 (52%), Gaps = 4/240 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   + D++K++F+ ++S+E+R+PL  I+GF+DLL  +  G    + +Q++
Sbjct: 622 AEQEMREARDKALQTDKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTTEEVAQFI 680

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 681 ATINKNCGLLLALINDILDLSRIESGTMEFIFAEHNLPLLLKTVHDSQRLNMPPGVELLL 740

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSS 729
            + +G       D  RL Q+ + +++NA  F+  GS T   +   + G     V++ G  
Sbjct: 741 RMPEGDKKYLQTDNVRLQQVVNNLINNAAKFTFSGSITFGYEEEEEPGYTRIFVEDTGVG 800

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I E+  + +F RF    +  Q  G GLGLSI ++ +    G +S++S     T    R+P
Sbjct: 801 ISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 858


>gi|206580985|ref|YP_002237365.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
 gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
          Length = 946

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 437 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 496

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 497 ---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISAN 553

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  ++    +  
Sbjct: 554 YLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIIL--HVQCA 611

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++  SV++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G ++
Sbjct: 612 GDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIA 671

Query: 774 ISSSDEGVTTINCRIP 789
           + +     +    RIP
Sbjct: 672 VETEPGMGSRFTIRIP 687


>gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1416

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 5/228 (2%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+ IK+ F+  +S+ELRSPL  I+G+  LL+T +      K++  +  I  ++ +   L+
Sbjct: 1039 ANRIKDEFLAVLSHELRSPLNPILGWARLLQTREFQPAEIKKA--IATIERNAKLQAQLI 1096

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
             D+LD++ +  G + L    + L  ++    +++       +I+I+ + D  LG  + D 
Sbjct: 1097 EDLLDVSRILQGKLNLKMFPVNLVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDS 1156

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
             RL Q+   +LSNA+ F+ +   + ++  R +     +V + G  I  +    VF  F  
Sbjct: 1157 DRLQQVIWNLLSNAVKFTPEEGKINIQLERIDSQAQITVSDTGKGISPEFLPHVFEYFRQ 1216

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIP 789
                  RR  G+GLGL+IV   I LHGG +   S  EG   I   R+P
Sbjct: 1217 ADGTTTRRFGGLGLGLAIVRHLIELHGGTIWAESLGEGQGAIFRVRLP 1264



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 5/237 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EAL + D  K  F  +VS+E R+PLT ++G  +    +    L + + + +E +  +
Sbjct: 340 KRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPLEETLANCATLLPAHEREQLEMVQRN 399

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL LVN +LD + ++AG ++ +Y    L     E+     + +    + + V     
Sbjct: 400 GLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSAVERAGMELSVNCPSL 459

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMC 735
                 DR+   +I   +LSNA  F+  G   + L+ A D+ +  F+VK+ G  IP +  
Sbjct: 460 PAPVYVDREMWEKIVLNLLSNAFKFTMTGKIAVSLQWANDHIE--FAVKDTGIGIPAEEI 517

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F RF  V  A      G G+GLS+V+  + +HGG V ++S     +     IP+
Sbjct: 518 PHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQMHGGTVKVTSVLGAGSCFTISIPT 574


>gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
 gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
          Length = 1331

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|327439016|dbj|BAK15381.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 458

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 124/238 (52%), Gaps = 7/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VE 611
           + L    + + K D++KN F+  +S+ELR+PLT I G+ ++L++ +   L  K+  + + 
Sbjct: 223 KTLNYMADEIVKTDQLKNDFISSISHELRTPLTGIKGWAEMLESPE--GLTEKEINFGLR 280

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I++ S  L+ LV D+L+ +  ++  ++L+ +      L+ EV   + +K +E NIR+K+
Sbjct: 281 MINSESDRLIKLVEDLLNFSRYESNRIELHPTKFAYATLIEEVTLQLQSKANEKNIRMKL 340

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            S     S  AD  ++ Q+    L N + FS   S +++K    NG  I  +++ G  I 
Sbjct: 341 NSTPV--SIYADEDKIRQVLLNTLENGIKFSPHNSEIVIKQYESNGKAICIIRDEGIGIK 398

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+  + + N F     +    G GLGL+I  + I  HGG + ++S     T +   +P
Sbjct: 399 EEQIQHIMNSFYKADVKS--VGAGLGLAISRTIILKHGGTIEVNSVYGKGTEVFIELP 454


>gi|311109196|ref|YP_003982049.1| sensory box protein 11 [Achromobacter xylosoxidans A8]
 gi|310763885|gb|ADP19334.1| sensory box protein 11 [Achromobacter xylosoxidans A8]
          Length = 1111

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 128/243 (52%), Gaps = 15/243 (6%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F++VT+  +  + L E   A  + +  K++F+  +S+E+R+PL  I+G  +LL  S+L 
Sbjct: 480 AFIDVTEKYQLAQRLREAKAAADRGNAAKSAFLAAMSHEIRTPLHAILGHLELLSRSRLA 539

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +   Q   +E + ASS +LL  ++D+LD + ++AG + L  +   L ++ +      A 
Sbjct: 540 PV---QRNRLETVRASSGLLLATISDVLDFSKIEAGELSLEQTEFDLLEVASRALSMFAP 596

Query: 661 KMHENNIRIKVISDGKLGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +     + +     G+LG+ +      D  RL Q+   +LSNA+ F+ +G  V+L+   D
Sbjct: 597 QAQAKGLALL----GELGAALRLPMRGDATRLGQVIHNLLSNAIKFTDQGQ-VVLRVRTD 651

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVS 773
                  V+++G  + E+  +SVF  F  ++A  G+R  G GLGL++    +   GG +S
Sbjct: 652 TTSIAIEVEDSGIGMTEEQTQSVFRAFSQADATIGRRYGGTGLGLTLCCRLVEAMGGSLS 711

Query: 774 ISS 776
           + S
Sbjct: 712 VRS 714


>gi|309790730|ref|ZP_07685279.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227221|gb|EFO80900.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 546

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 127/247 (51%), Gaps = 15/247 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L ++ EA  +A   K+SF+ +VS+ELR+PL  I+G++ +L             + ++
Sbjct: 291 QRDLVDRAEAANRA---KSSFIANVSHELRTPLNAILGYSQILSMDIKQLKRPDLEESID 347

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIR 668
            I+ +   LL+L+ND++DL+ ++ G M L+YS + L   +  +    Q++A   H +   
Sbjct: 348 QITTAGQHLLDLINDVIDLSRIEGGQMSLSYSYVDLASFMQHLINANQNLAALNHNS--- 404

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVK 724
           + ++    +G  + D  ++ +I   ++SNA  F+  G    +    +++  +   + +V+
Sbjct: 405 LVLVCPNDIGLVMIDAPKVRRILLNLISNACKFTDHGQITCIVELHRSSEADTMLVIAVR 464

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  D  + +FN+F+       RR  G+G+GL++      L GG +S+ S     +
Sbjct: 465 DTGIGIHPDQIEDLFNQFIQADSSSTRRYGGLGMGLTLSRHLCQLMGGQISVESRPGYGS 524

Query: 783 TINCRIP 789
           T    +P
Sbjct: 525 TFRVHVP 531


>gi|291549940|emb|CBL26202.1| Osmosensitive K+ channel histidine kinase [Ruminococcus torques
           L2-14]
          Length = 899

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 146/271 (53%), Gaps = 8/271 (2%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPL 584
           E  + P  N+  +        ++  E+   EK EA  L K ++++ + ++ +S++LR+PL
Sbjct: 627 EIPLDPFENSILLSILGECALALENEKNAREKQEAAILAKNEQLRANLLRAISHDLRTPL 686

Query: 585 TNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           T+I G  ++LL        ++K+  Y++ I   S  L+NLV ++L +  ++ G + L  +
Sbjct: 687 TSISGNASNLLSNGDFFDNDTKKQLYMD-IYDDSMWLINLVENLLAVTRIEEGRLNLRIT 745

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +++D++ E    I  K  E++I ++   +  L     D + ++Q+   I+ NA+ ++ 
Sbjct: 746 EDLMDDVITEALHHINRKSEEHHISVESKEEFLLAKM--DAKLIVQVIINIVDNAIKYTP 803

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           K S ++++  +     I S+ ++G+ I +++   +F+ F S A++    RR +GLGLS+ 
Sbjct: 804 KNSHIVIRTEKRGKQAIVSISDDGNGIADEIKPRIFDMFYSGANQIADSRRSLGLGLSLC 863

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +S IN HGG +++S +    T     +P+ E
Sbjct: 864 KSIINAHGGELTVSDNLPHGTVFTFTLPAGE 894


>gi|213971910|ref|ZP_03400010.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
 gi|301384480|ref|ZP_07232898.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060514|ref|ZP_07252055.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato K40]
 gi|302132002|ref|ZP_07257992.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923335|gb|EEB56930.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
          Length = 917

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H  ++ +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|73538799|ref|YP_299166.1| sensor histidine kinase [Ralstonia eutropha JMP134]
 gi|72122136|gb|AAZ64322.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Ralstonia eutropha JMP134]
          Length = 299

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 14/227 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + E LR+A E+K+ F+ ++S+E R+P+  I   T LL     G L  +Q + V ++  ++
Sbjct: 49  QAEQLRQATELKSRFLAYMSHEFRTPIVAIQSITRLLIDRVDGPLTPEQEKQVRFVRDTA 108

Query: 618 TILLNLVNDILDLATVDAGIMKLN---YSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                +VND+LDLA ++AG + ++   +  + L D L  + + + T     N  + +I +
Sbjct: 109 AEFAGMVNDLLDLARLEAGRVDVSPAWFDMVALFDALRGMFKPVLT-----NPEVSLIFE 163

Query: 675 GK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731
               +    +D +++ QI    +SNA+ F+  G  V + A R+ GD I FSV++ G  IP
Sbjct: 164 EPHDVSKLFSDDRKVSQILRNFISNALKFTPSGE-VRVSAKREPGDMIMFSVRDTGIGIP 222

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            +   +VF  FV      QR  RG GLGL++ +    L GG +   S
Sbjct: 223 AEAHGAVFGDFVQVDSPLQRRYRGSGLGLALSKRLAELLGGSIGFES 269


>gi|309792210|ref|ZP_07686682.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225751|gb|EFO79507.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 921

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 11/232 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +N+A   A   K++F+ ++S+E+R+PL  +IG   LL+ S+   L+ +Q  +V+ I
Sbjct: 417 ALRARNDAAEAATRAKSAFLANMSHEIRTPLNAVIGMAALLQESR---LDQEQRIFVDTI 473

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 LL +++DILD + +++G ++L  +   L+  L      +A   +  N+ +    
Sbjct: 474 RTGGEALLAVISDILDFSRIESGQLELELAAFDLHHYLKTTVDLVAHSAYTKNLAMTCHI 533

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFI---FSVKNNG 727
              +   V  D  RL QI   +L NA+ F+S+G   +     D  N D +   F V++ G
Sbjct: 534 APDVPQIVQGDAARLRQILLNLLGNAVKFTSQGEVALEVTLHDQPNPDGVEITFQVRDTG 593

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +  +  + VF  FV       RR  G GLGL+I +  ++L GG +S +SS
Sbjct: 594 IGMSAEQLERVFAPFVQADSSTARRYGGTGLGLAISQQLVHLMGGTISATSS 645


>gi|257792781|ref|YP_003183387.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|325831117|ref|ZP_08164441.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|257476678|gb|ACV56998.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|325487038|gb|EGC89484.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 562

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 142/282 (50%), Gaps = 20/282 (7%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           ++I  F+D    L+G  E L   V E ++  L  A  +L         R    L + N  
Sbjct: 267 SLIAGFNDMAGELRGMYEHLESQVQERTV-DLREANALLE--------RQRDKLEQLNAD 317

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +  + K+  +  V++ELR+PLT+II F  + + +     N    +  E I  +S ILL
Sbjct: 318 LAQETQFKSDLLSMVNHELRTPLTSIITFAQISREA-CDPANEHDRRSWEEIEKNSRILL 376

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGS 679
           N++N++LD+A  DAG M+     + L D+   VK ++A   + +E +   KV SD  L +
Sbjct: 377 NMINNMLDIARSDAGGMRATCEPMDLGDVAASVKGTMAPLARKYEVSFSTKVASDVPLVN 436

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI-PEDMCK 736
              D ++  ++   + SNA+ F+  G ++ L+ A D    +   S+ ++G  I PED  +
Sbjct: 437 --GDYEKTTRMLENLASNAIKFTPDGGSIELRVAYDAEARVVTLSMVDDGIGIAPEDQAR 494

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F RFV       R+  G GLGL++V  + ++ G  VS+ S
Sbjct: 495 -IFERFVQVDSTSTRKYNGSGLGLALVREYGDMQGFAVSVES 535


>gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 607

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 164/357 (45%), Gaps = 26/357 (7%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I ++++G+     +G I   NP    +   EE +L+P    RN      + Y+E    D 
Sbjct: 264 ITYMADGIIAATKEGEILHVNPKAMEMLNIEEGQLAP----RNFNEIF-KPYDEEFEMDY 318

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +      E ++ Q  L +    +LE S  P         F+N   ++     L +  
Sbjct: 319 LLEM-----SENQTGQRMLYVEDGVILEASYAP---------FINENGALGGIILLLQDV 364

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + +K + ++  FV +VS+EL++PLT I  +T+ L    L +     S +++ +   +  
Sbjct: 365 TSAQKLENMRKEFVANVSHELKTPLTTIKSYTETLLDGVLENTELATS-FLQVVDGEAER 423

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIKVISDGKL 677
           +  LV D+L L+ +D      N   + LN+++    +K  ++ K     I I  + D  +
Sbjct: 424 MARLVRDLLQLSNLDYKKSNWNKKEVNLNEIIENSILKIDVSAKNKAQEI-ITHLQDEPV 482

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             + AD+ R+ Q+   ILSN++ ++ +G  +I+    D G     +++ G  IP++    
Sbjct: 483 HIY-ADKDRIEQVILNILSNSIKYTPEGGRIIVDLIVDEGVVTLKIRDTGIGIPKEDIAR 541

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F RF  V  A   +  G GLGLSI +  I  H G + I S +   T ++ ++P  E
Sbjct: 542 IFERFYRVDKARSREMGGTGLGLSIAKQIIEAHEGTIEIFSEEGHGTEVHTKLPVTE 598


>gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus]
          Length = 2370

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 125/232 (53%), Gaps = 17/232 (7%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +A + K+ F+ +VS+ELR+PL  +IG ++LLK S L   N +QS Y + I   +  LL++
Sbjct: 1883 EAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPL---NGEQSGYADSIRVCADTLLSI 1939

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---F 680
            +ND+LD + ++AG M +    I LN+ + EV +++A    E    +K I   +L      
Sbjct: 1940 INDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERG--LKTIEQLELDPEMLV 1997

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735
            + D  RL QI   +LSN+  F+ +GS V ++A  D       D   SV + G  IP++  
Sbjct: 1998 MGDPVRLHQILMNLLSNSYKFTPRGS-VTVRAVVDQETSEWADVTCSVIDTGIGIPDEQK 2056

Query: 736  KSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
            + +F  F  + ++      G GLGLSI ++ I N+  G V + S     TT+
Sbjct: 2057 QKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTV 2108


>gi|300087390|ref|YP_003757912.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527123|gb|ADJ25591.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 479

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 12/238 (5%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL K+++ +   +  V++ELR+PLT I G  D +    L        Q +  I   S +L
Sbjct: 243 ALEKSEQSRKRLLADVAHELRTPLTVINGTVDAMMDGVL----PTDEQQLGTIKEESLLL 298

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+ DL+  +AG +KL+ S I L DL+    +         NIR++  + G L S 
Sbjct: 299 TRLIADLRDLSLAEAGQLKLDKSVIDLGDLVCRKLEQFRLLAETRNIRLECHNPGGLPSV 358

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFI-FSVKNNGSSI-PEDMC 735
             D  RL Q+ + +LSNA+  +  G  V   + +A+ D    +  +V + G  + PED+ 
Sbjct: 359 NGDWVRLEQVLANLLSNALRHTPAGGEVSVRLTEASLDGSPAVAVAVSDTGEGMTPEDL- 417

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           K +F+RF  V ++      G GLGL+IV+  +  H G VS+ S+    TT    +P++
Sbjct: 418 KHIFDRFYRVEDSRSRDEGGAGLGLAIVKQMVTAHSGRVSVESAPGRGTTFTVTLPAQ 475


>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
 gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
          Length = 1761

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +L+  N+T   +    L +  ++   A++ K+ F+ ++S+E+R+P+  IIG + L   ++
Sbjct: 1007 VLSMANITSLKQLSEELKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTE 1066

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            L   N KQ  YV  I  +S  LL ++NDILD + ++AG + +      L+ LL ++    
Sbjct: 1067 L---NRKQQNYVLKIDRASKSLLGIINDILDFSKIEAGKLDIESVPFQLDTLLEDLSDMF 1123

Query: 659  ATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
            + K  +  + +   ++         D  RL Q+   ++SNA+ F+ +G  ++    L+  
Sbjct: 1124 SVKATDKRLELLFAVAPNIPRQLQGDPLRLSQVLINLMSNAIKFTEQGEVLLSISQLERI 1183

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             D+    FSV++NG  + E+  + +F  F        R+  G GLGL+I +  + L GG 
Sbjct: 1184 EDDIVLRFSVRDNGIGLTEEQRERLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGE 1243

Query: 772  VSISS 776
            + + S
Sbjct: 1244 IGVES 1248


>gi|301163451|emb|CBW23002.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 812

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%)

Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           PN +  L  VN   +V+ E     RA  +K E   +++ +K++F+ ++S+E+R+PL  I+
Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLL T       ++Q ++   I  ++T+LL L +DI+DL+ +DAG  +     + L 
Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLY 665

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
                + Q +  K+ E  + +++  D  L + F AD   L Q+ +  +SNA+ F+ +G+ 
Sbjct: 666 QFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRGTI 724

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            +             V++ G  I  +  ++VF+RF+      Q  G GLGL + +S I  
Sbjct: 725 TVGYRIDTRQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782

Query: 768 HGGHVSISS 776
            GGH+ + S
Sbjct: 783 MGGHIGVIS 791


>gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
 gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
          Length = 946

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 437 AICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 496

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +
Sbjct: 497 ---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISAN 553

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  ++    +  
Sbjct: 554 YLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTGCIIL--HVQCA 611

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           GD++  SV++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G ++
Sbjct: 612 GDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIA 671

Query: 774 ISSSDEGVTTINCRIP 789
           + +     +    RIP
Sbjct: 672 VETEPGMGSRFTIRIP 687


>gi|255011870|ref|ZP_05283996.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 3_1_12]
          Length = 629

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 132/263 (50%), Gaps = 7/263 (2%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P    + +    ++ D +R  + L +      +AD +K+ F+ ++S+E+R+PL  I+G
Sbjct: 233 IAPFEGNKVLALIHDIGDRIRRSQELLDAKRRAEEADRMKSLFLANMSHEIRTPLNAIVG 292

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     ++ 
Sbjct: 293 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISG 349

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L +EV +    KM +  + + VI          DR R+ Q+    LSNA+  + +GS + 
Sbjct: 350 LADEVYKVHRLKM-KKGVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 407

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
               ++     F V + G  I ++    +F RF       Q  G GLGL I +S +   G
Sbjct: 408 FGLVKEEEWVKFYVADTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 465

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S  E  +T    +P+K+
Sbjct: 466 GRIEVESELEKGSTFTLYLPNKQ 488


>gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1090

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 130/267 (48%), Gaps = 37/267 (13%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  +AE AL +  EA   A+  K+ F+  +S+ELR+PL  I+GFT +++  +  +LN
Sbjct: 569 DITERQQAEEALKQAKEAADAANRAKSEFLASMSHELRTPLNAILGFTQVMRRDR--TLN 626

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  Q +  IS S   LL L+NDIL+++ ++AG    + ++  L  LL+ ++  +  K  
Sbjct: 627 PEHQQNLSIISRSGEHLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQ 686

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD 718
           E  +++      ++  ++  D  +L Q+   +L NA+ F+ +G  V L+   +     G 
Sbjct: 687 EKGLQLIFERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEEGG-VTLRVKSEVRSRKGG 745

Query: 719 F----------------------------IFSVKNNGSSIPEDMCKSVFNRF-VSNAHRG 749
           F                             F V+++G  I  +    +F  F  +   R 
Sbjct: 746 FRESATLRTIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQ 805

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776
            + G GLGL I   F+ L GG++S+SS
Sbjct: 806 AQEGTGLGLPISRKFVQLMGGNISVSS 832


>gi|240141036|ref|YP_002965516.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens AM1]
 gi|240011013|gb|ACS42239.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens AM1]
          Length = 803

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL+ +IG++++L         ++    +  I +S+  LL L+ND+L
Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVL 347

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG + L   T  +  L+ +V  +  + + +   R ++  +G LG+   D+ +L 
Sbjct: 348 DISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQSKLR 407

Query: 689 QIFSKILSNAMDFSSKGSTVI-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
           Q    ++ NA  FS  G  ++ ++  R+ G D++ FSV + G  + ++    +F RF   
Sbjct: 408 QSLINLIGNAAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQA 467

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                R+  G GLGL+I  +F+   GG + + S+     T   R+P
Sbjct: 468 DESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGAGATFTIRLP 513


>gi|209965184|ref|YP_002298099.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209958650|gb|ACI99286.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 420

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 29/257 (11%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
           AER L E+ E  R+ +  K+ F+ + ++ELR+PL  I+GF DLL     G L N   ++Y
Sbjct: 163 AERQLAEQLEHSREENRRKSEFLANATHELRTPLNAILGFADLLVAEAYGPLGNPHYAEY 222

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQ-------SI 658
              I  ++  LL LV   +DLA  ++G  ++    I     + D +  ++Q       S+
Sbjct: 223 AHDIHTAAEHLLALVEGTMDLAKAESGQDEIELREIDIGRTVQDSIRLLRQLAEIGGVSL 282

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDN 716
              + E  +R++           +D +++ QI   + SNA+ F+ KG   TV + A  D 
Sbjct: 283 TVSVPETPLRLR-----------SDPEKIRQIVLNLASNAIKFTPKGGCVTVDVSADSDG 331

Query: 717 GDFIFSVKNNGSSI-PEDMCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           G  I  +++ G  I P+D+  ++  F + V +  R   +G GLGL +   F+ + GG ++
Sbjct: 332 GACILVIRDTGIGIAPQDLATALRPFGQ-VRSPDRPHPKGTGLGLPLTRRFVEMLGGSMA 390

Query: 774 ISSSDEGVTTINCRIPS 790
           I S     T +  R+P+
Sbjct: 391 IDSRPGHGTVVTVRLPA 407


>gi|167769698|ref|ZP_02441751.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM
           17241]
 gi|167668059|gb|EDS12189.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM
           17241]
          Length = 469

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 12/235 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASST 618
           E L   D +KN F+  VS+ELR+PLT I G+ + L     G ++ +  ++ +  I++ + 
Sbjct: 238 EELSANDRMKNDFISSVSHELRTPLTAIKGWAETLADMG-GEVDPEMLAKGMRVITSETE 296

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT----KMHENNIRIKVISD 674
            L  +V ++LD + + +G MKL    +   D++ E+ +++        HE   R+     
Sbjct: 297 RLAGMVEELLDFSRIQSGRMKLVKDRM---DVIAELSEAVLMFEERARHEGK-RLIYNEP 352

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +  SF+ DR RL Q+F  I+ NA+ +S +G TV ++A+        SV + G  I E+ 
Sbjct: 353 DQFASFMGDRNRLRQVFVNIIDNALKYSDRGDTVTVRASVSESQVDISVADTGIGIREED 412

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  +F        RRG G+GL++ +  ++LHGG + I+S +   T +   +P
Sbjct: 413 LPKIKEKFFK--ANSTRRGSGIGLAVADEIVSLHGGTLDITSKENVGTRVTIHLP 465


>gi|153010009|ref|YP_001371224.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151561897|gb|ABS15395.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 614

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L N KQ +Y   I  S   LL LVN +
Sbjct: 329 KGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLANEKQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   ++       D        +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGNYSIDPQNFAFRDAAEMCTSVMLPQAEKKGVAFCHRVGAGIGELVADRRAI 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF--SVKNNGSSI-PEDMCK--SVFN 740
            QI   + SNA+ F+  G  V + A R   +G  +   SV + G  I PEDM +  + F 
Sbjct: 449 QQILLNLASNAVKFTQSGGCVTIDATRVMASGRAMLEISVSDTGIGIEPEDMQRIGTPFV 508

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           R  +N  R Q  G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 509 RADNNYTRAQ-EGSGLGLSVVKGLVELHQGSMQLKSCPGEGTIVTIRLP 556


>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
 gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
          Length = 762

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 126/247 (51%), Gaps = 9/247 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL E  +A   A+  K+ F+ ++S+E+R+P+  +IG  +L+  ++L   +  Q  Y E
Sbjct: 223 EHALQEACKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILDTEL---DEDQQMYAE 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS S + LL ++NDIL+ + ++AG ++L+ +   L   + +V   ++ +     + I +
Sbjct: 280 TISKSGSALLTIINDILNFSKIEAGKVELDNAPFNLQVAIEDVVTLLSPRATMKGVEITL 339

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVK--NNG 727
                L   F  D  R+ Q+ + I+ NA+ F+S G   I +  A+    +   ++  + G
Sbjct: 340 RYAPDLPEFFTGDVGRVRQVVTNIVGNAIKFTSTGYVAIDVSGAKGPKGYQLGIEVLDTG 399

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPE+    +F+ F  V +A      G GLGL+I    ++L GG V++ S     +   
Sbjct: 400 IGIPEERLDDIFSAFEQVDSAATRSFEGTGLGLAISSRLLSLMGGRVTVKSVAGKGSVFT 459

Query: 786 CRIPSKE 792
            R+P  E
Sbjct: 460 IRLPLTE 466


>gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
 gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
          Length = 1331

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
 gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
          Length = 1331

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|313149705|ref|ZP_07811898.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138472|gb|EFR55832.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 641

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 132/263 (50%), Gaps = 7/263 (2%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P    + +    ++ D +R  + L +      +AD +K+ F+ ++S+E+R+PL  I+G
Sbjct: 245 IAPFEGNKVLALIHDIGDRIRRSQELLDAKRRAEEADRMKSLFLANMSHEIRTPLNAIVG 304

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     ++ 
Sbjct: 305 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISG 361

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L +EV +    KM +  + + VI          DR R+ Q+    LSNA+  + +GS + 
Sbjct: 362 LADEVYKVHRLKM-KKGVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 419

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
               ++     F V + G  I ++    +F RF       Q  G GLGL I +S +   G
Sbjct: 420 FGLVKEEEWVKFYVADTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 477

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S  E  +T    +P+K+
Sbjct: 478 GRIEVESELEKGSTFTLYLPNKQ 500


>gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1626

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 128/241 (53%), Gaps = 10/241 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++T   + E+ L    +    A+  K++F+ ++S+E+R+P+  ++G   L++ +   +L
Sbjct: 874  IDITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYT---AL 930

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +Q  YV     ++  LL L+NDILD + +DAG +KL+     +  L+ ++   ++   
Sbjct: 931  SVQQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANH 990

Query: 663  HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
              +++ +    D  L ++ +AD+ RL QI   +  NA+ F+  G  ++ L+  R   + +
Sbjct: 991  GNSDVEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESV 1050

Query: 721  ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               FS+ ++G  I E+  + +F  F        RR  G GLGL+I +  + L GG + ++
Sbjct: 1051 TVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVT 1110

Query: 776  S 776
            S
Sbjct: 1111 S 1111


>gi|91974887|ref|YP_567546.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91681343|gb|ABE37645.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 650

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+  +   S+E+R+PL  IIG + LL  +   +L  +Q+ YV  +  S   LL+L++++L
Sbjct: 134 KSRLLAMASHEIRTPLNGIIGMSGLLLDT---TLTPEQATYVRAVKTSGDALLSLIDELL 190

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           D + +DAG ++L++    L  L+ ++ + +A +     I I    D +L    + D  RL
Sbjct: 191 DYSKIDAGKIELDHRPFALAALIEDIAELLAPRAQARAIEIAAYVDERLPAQVIGDAARL 250

Query: 688 LQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+   +  NA+ F SS G  +I +    +G+    +++ G  I  +    VF  F   A
Sbjct: 251 RQVLLNLAGNAIKFTSSGGVALIAEPGERDGEIDLLIRDTGIGIAPEAQARVFREF-EQA 309

Query: 747 HRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G  R   G GLGLSI E  ++  GG + + S     TT    IP
Sbjct: 310 DDGIARNYGGTGLGLSISERIVSGMGGRIVLHSRPGIGTTFTVSIP 355


>gi|66811194|ref|XP_639305.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74854804|sp|Q54RP6|DHKL_DICDI RecName: Full=Hybrid signal transduction histidine kinase L
 gi|60467894|gb|EAL65907.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1709

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 139/271 (51%), Gaps = 13/271 (4%)

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ--HVSYELRSP 583
             E SI P+ +    + + N T     ++ + E+++ L +   I+ S ++   +S+++R+P
Sbjct: 786  FEASISPVLDQFQQILYYNCTKRDVTQKRIDEESKTLEQNKIIEKSRLRLSMMSHDIRTP 845

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            ++NIIG  DLL  +   SL+  Q  Y+E I  SS  LL ++NDILD++ ++AG + ++Y 
Sbjct: 846  MSNIIGMADLLLDT---SLSQHQHHYLEIIKNSSNTLLTIINDILDISKIEAGKLDIDYE 902

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
            +   N  +++V +S+A ++    + +    D K+ +  +    RL QI + +L N++ F+
Sbjct: 903  SFDFNATVSQVVESMAQRVQSKGLELLSYVDPKIPNILIGPSSRLNQILTNLLGNSLKFT 962

Query: 703  SKGSTVILKAARDNGDFIFSVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             KG   I     D  D  + +K    + G  I ++    +F  F        R+  G GL
Sbjct: 963  DKGEISICCLLNDETDSEYEIKVDVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGL 1022

Query: 757  GLSIVESFINL-HGGHVSISSSDEGVTTINC 786
            GL+I +  ++L   G +S+ S     +T  C
Sbjct: 1023 GLAICKELVHLAFNGEISVESQYGHGSTFTC 1053


>gi|326796477|ref|YP_004314297.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326547241|gb|ADZ92461.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 854

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERA   +++A  KA  +K+ F+  +S+ELR+PL  IIG ++++    +   +    + +
Sbjct: 362 AERA---RDDA-EKASAVKSEFLAKMSHELRTPLNAIIGLSEMMHEDAVEFGDEDYIEPL 417

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  SS  LLNL+N+ILD++ ++AG M+L+ + +  + +L EV Q++        +  +
Sbjct: 418 ERVVRSSKHLLNLINEILDISKIEAGKMELSEAELDFDAVLEEVFQTVEPIAKGKPLSFE 477

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             S   +G  V D  R+ QIF  +LSNA+ F+  G  V LK    +      V + G  +
Sbjct: 478 YES-ASVGVIVGDALRIKQIFFNLLSNAVKFTESGK-VKLKVVEQSDQLQVDVIDTGLGM 535

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  +++F  FV       R+  G GLGL+I   F  +  G +++ S     +  + R+
Sbjct: 536 SIEQTETLFQDFVQVDSSVNRKFEGTGLGLAISRRFARMMNGDITVQSEVGKGSVFSVRL 595

Query: 789 PSK 791
           P K
Sbjct: 596 PVK 598


>gi|253565691|ref|ZP_04843146.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945970|gb|EES86377.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 812

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%)

Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           PN +  L  VN   +V+ E     RA  +K E   +++ +K++F+ ++S+E+R+PL  I+
Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLL T       ++Q ++   I  ++T+LL L +DI+DL+ +DAG  +     + L 
Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLY 665

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
                + Q +  K+ E  + +++  D  L + F AD   L Q+ +  +SNA+ F+ +G+ 
Sbjct: 666 QFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRGTI 724

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            +             V++ G  I  +  ++VF+RF+      Q  G GLGL + +S I  
Sbjct: 725 TVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782

Query: 768 HGGHVSISS 776
            GGH+ + S
Sbjct: 783 MGGHIGVIS 791


>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1493

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 31/256 (12%)

Query: 549 VRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           V++ RAL  KN+AL +A          K+ F+  +S+E+R+P+  +IG T LL   +L  
Sbjct: 705 VKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMEL-- 762

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +Q  +VE I  S   LL ++NDILD + +++G ++L      L + L E  + ++ +
Sbjct: 763 -TPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGR 821

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR----- 714
             E  + +  I D     + + D  RL Q+   ++SNA+ F+S+G  ++ +KA       
Sbjct: 822 ADEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKK 881

Query: 715 -----DNGDFI-------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
                D+ DF        F V++ G  IP D    +F  F  V  +   +  G GLGL+I
Sbjct: 882 DVKKSDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAI 941

Query: 761 VESFINLHGGHVSISS 776
            +    L  G + ++S
Sbjct: 942 SQRLSQLMNGKMWVAS 957


>gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
 gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
          Length = 732

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 110/212 (51%), Gaps = 7/212 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K +F+ ++S+E+R+P+  +IG  +LL+ +    LN +Q    + +  SS  LL+LVND+L
Sbjct: 191 KTAFLANMSHEIRTPMNGVIGMAELLEET---DLNEEQRMCTKTVVESSNALLSLVNDVL 247

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D +  DAG M +N +   L + L      +A    E +I I + I D +    + D+ RL
Sbjct: 248 DFSKADAGKMTVNKAPFDLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGRL 307

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+   ++ NA+ F+  G  +I        D + F V++ G  IP     ++F+ F    
Sbjct: 308 RQVLINLVGNAIKFTETGFVLIKLEVNTESDLMRFLVQDTGIGIPASKVDTIFDVFEQVN 367

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGL+I +  I L GG + ++S
Sbjct: 368 SETTRRYDGAGLGLAISKKLIELMGGTLGVTS 399


>gi|86133740|ref|ZP_01052322.1| two-component system sensor histidine kinase/response regulator
           [Polaribacter sp. MED152]
 gi|85820603|gb|EAQ41750.1| two-component system sensor histidine kinase/response regulator
           [Polaribacter sp. MED152]
          Length = 507

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 135/254 (53%), Gaps = 17/254 (6%)

Query: 552 ERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +R + EKN+ L +  EI       K+ F+  +S+E+R+PL  I+G+T+L+   +   +  
Sbjct: 115 KREIAEKNKELIRLREIADKANSEKSRFLAMMSHEVRNPLNVILGYTELINKEETSLM-- 172

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              +Y++YI+ S   L  +V+DILDL+ V+AG + L    + ++ ++ ++K +      +
Sbjct: 173 -AQEYLKYITISGRNLKVIVDDILDLSRVEAGKLVLASEPMSISSIIEQIKNNYQGSHKD 231

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719
            +I ++  +SD      + D  RL+QI + +++N++ F+ +G    S  +L +  D    
Sbjct: 232 LDIELEFNVSDNLPEEVLGDDVRLIQILTNLINNSIKFTPRGTVTTSVELLFSDTDKALI 291

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F VK+ G  +  +    +F+ +  N     R   GVGLGLSIV+  +++  G + + S 
Sbjct: 292 SFKVKDTGRGMTPEQADKIFDEYQQNRLSDNRMHNGVGLGLSIVKRLVDVMEGRIKVDSL 351

Query: 778 DEGVTTINCRIPSK 791
               TTI+  IP K
Sbjct: 352 KNYGTTISIDIPFK 365


>gi|170758751|ref|YP_001785673.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405740|gb|ACA54151.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 615

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 124/231 (53%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++   F+ ++S+EL++PL  I     LL   +    + KQ +Y++ I  +   L+ 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEEDCNDEKQDKYLKLIKQNCYRLMK 415

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD   +D+G +KLN     + +L+ E+  S+ +      I I   ++ +      
Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741
           D  ++ +I   +LSN++ F++ G  + +   +D+G+ ++  VK+ G  IP D  +S+F R
Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGNIFVN-VKDSGENVYIHVKDTGVGIPSDKLESIFER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  V    +  + G G+GL +V+SF+ +H G V+I S     T    ++P+
Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVTIKSELGKGTEFIIKLPA 585


>gi|27366394|ref|NP_761922.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362595|gb|AAO11449.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 718

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 7/239 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++    R +++L+E  +    A+  K+ F+ ++S+ELR+PL  ++G+T L+K  +   L
Sbjct: 240 VDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQ--RL 297

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +K  +Y+E I+ S   LL+L+ND+LD++ +DAG   +        ++  E+   +  K 
Sbjct: 298 TAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKA 357

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGD- 718
            +  + +    +  +  FV  D  +  Q+   +L NA+ F+ +G+    I   A  NG  
Sbjct: 358 MQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQH 417

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              F V ++G  I E+  + VF  F        + G GLGLSI + F+ L GG + + S
Sbjct: 418 KVTFEVSDSGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKS 476


>gi|51891870|ref|YP_074561.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855559|dbj|BAD39717.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 584

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 116/237 (48%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E +  L      +  F   +++E R+PLT+IIGF+ LL +     L   Q ++++ 
Sbjct: 339 RQLQEAHADLEALHRSQTEFYSAMTHEFRTPLTSIIGFSQLLLSPGGDPLTPGQREHLKD 398

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL LVND+LD + + AG M L  + + L + + E    +     +  I +   
Sbjct: 399 ILESAQRLLQLVNDLLDASRLQAGQMPLRIAAVDLGEAVQEALAVVRPLAQQREITVTCH 458

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L    AD  R+LQI   +LSNA+ F+  G  V L A   +     SV++NG  IP 
Sbjct: 459 IPADLPLVAADDLRVLQILLNLLSNAIKFTQVGGEVALTAEARSDLVQVSVRDNGPGIPP 518

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F  F   +   +  G GLGL++ +  + LHGG + + S     +T +  +P
Sbjct: 519 EDHEVIFQLFRRGSAHERTGGSGLGLALAKLLVELHGGRIWVESRPGCGSTFHFTLP 575


>gi|319411626|emb|CBQ73670.1| related to histidine kinase (C-terminal fragment) [Sporisorium
            reilianum]
          Length = 1516

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 24/253 (9%)

Query: 543  VNVTDSVRAERALTEK----------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            +++TD  RAE  L E             A ++A  IK+ F+ ++S+E+R+P+  +IG ++
Sbjct: 827  MDITDRRRAEHKLEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSE 886

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  +    L+ +Q  + E I  S+  LL ++NDILD   ++ G M L  +   LN ++ 
Sbjct: 887  LLCDTP---LSKEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIM 943

Query: 653  EVKQSIATKMHENNIRIKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
            + ++ +     +  +  +  ++ +L   G  V D  RL Q+ + +L+NA+ F++ G+   
Sbjct: 944  DTQKMLTFATQKKGLEFR--NECQLSFTGQIVGDAGRLRQVLTNLLTNAIKFAAAGAITL 1001

Query: 709  -ILKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             +++   D       F V++ G  I +   K +F  F        RR  G GLGLSI ++
Sbjct: 1002 RVIETYEDQKSLHVHFEVRDTGCGISQTTLKKLFQPFSQADPSFARRFGGTGLGLSICKN 1061

Query: 764  FINLHGGHVSISS 776
             ++L GG + + S
Sbjct: 1062 LVDLMGGTIGLES 1074


>gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 646

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           T V VT  V   R   ++ +  R    +ADE+K  F+  VS+ELR+PL  IIGF+D+L  
Sbjct: 319 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGG 378

Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               SL+ ++S +Y   I+ S   LL++VN +LD++ +  G        + +  L+    
Sbjct: 379 EGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCC 438

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +  K   + I +         + VAD +   Q+   ++SNA+ F+ +G  V +   R 
Sbjct: 439 DLMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 498

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  V ++G  I E     + + F  V   +     G GLGLS+V     LHGG VS
Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    T +   +P
Sbjct: 559 VESAPGKGTAVTVTLP 574


>gi|167583130|ref|ZP_02376004.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia thailandensis TXDOH]
          Length = 1108

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 130/252 (51%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T+  RAE+ L E       A + K +F   +S+E+R+PL++++G  +L+    LG
Sbjct: 468 AIADMTEHHRAEQVLREAKLTTEAAAKAKVNFFASMSHEIRTPLSSLVGNIELVA---LG 524

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q + V  +  S+  LL +VND+LD + +D G + L+     + +LL+ +  S A 
Sbjct: 525 PLAPEQRERVRAMQVSAEGLLQVVNDVLDFSKIDIGELSLSEEWRSMTELLSRLAASYAL 584

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 +++ +  D  + + +  D  R+ QI + +LSNA  F+  G  + L+A     + 
Sbjct: 585 LATRQGLKLYLNFDRTIPTRLHFDPVRVSQIINNLLSNAFKFTQSGK-ITLRARWTEPNL 643

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFV-SNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SV ++G  IP+ +   +F  F   +++R  Q RG GLGLSI      L  GH+++ S+
Sbjct: 644 EISVIDSGIGIPDALRDRLFQPFTQGDSNRLAQARGTGLGLSICARLCELMNGHIALDSA 703

Query: 778 DEGVTTINCRIP 789
               T I   +P
Sbjct: 704 VGVGTHITVTLP 715


>gi|83312977|ref|YP_423241.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947818|dbj|BAE52682.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1177

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K+ F+ ++S+ELR+PL +++     L  +  G+++  Q +    I  S T LL L
Sbjct: 513 QASRYKSEFLANMSHELRTPLNSVLILARDLADNDTGNMSDDQVESARVIHESGTHLLAL 572

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +ND+LDL+ V+AG M L+  TI + DL+  ++   A    +  +  +V  D  L  S  A
Sbjct: 573 INDVLDLSKVEAGKMTLDPVTIAIADLVQVIRGRFAPVATDKGLGFQVEVDPDLPRSLKA 632

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           DR ++ QI + ++SNA+ F+S+G  TV L    D      SV + G  I     + VF  
Sbjct: 633 DRGKIEQIANNLVSNAIKFTSEGGVTVRLSLTGDGHVLALSVADTGIGIAPQDRQRVFAA 692

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F   A  G  R   G GLGL+I      L GG +++ ++ +  +     +P
Sbjct: 693 F-EQADSGTSRQFGGTGLGLTISRKLARLMGGDITLDANGDKGSVFTLLLP 742


>gi|327538028|gb|EGF24718.1| two-component hybrid sensor and regulator [Rhodopirellula baltica
           WH47]
          Length = 953

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 123/261 (47%), Gaps = 30/261 (11%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++V D    E++L +       A+  +  F+ ++S+E+R+P+  I+G  D+LK       
Sbjct: 536 IDVDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDHLKDPD 595

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N    Q VE I  +   LLN++NDILDL+ +D+G M+L    +  + LL EV+  +  + 
Sbjct: 596 NI---QVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRA 652

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KA 712
            E ++ +K+  DG +   +  D  RL QI   ++ NA+ F+  G   IL          A
Sbjct: 653 SEKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDSGEVKILVGYDGPGKRPA 712

Query: 713 ARDNGD-------------FIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             D  D              IF + + G  I PED   S+F  FV       R   G GL
Sbjct: 713 EIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQA-SLFEPFVQADSTSTRSFGGTGL 771

Query: 757 GLSIVESFINLHGGHVSISSS 777
           GL+I     +  GG VS+ S+
Sbjct: 772 GLAICRRLAHALGGDVSVEST 792


>gi|291326604|ref|ZP_06125114.2| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
 gi|291313686|gb|EFE54139.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
          Length = 1032

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 123/240 (51%), Gaps = 5/240 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F ++T     E+ L +      +A+  K++F+  +S+E+R+PL  +IG  +LL  + 
Sbjct: 434 LCAFTDITIQAETEKQLDDAKRLAEEANRAKSTFLATMSHEIRTPLYGLIGTLELLANT- 492

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             SL+S+Q+ +++ IS +S +L+ L+ DILD++ ++A  ++++     L +L+ +  Q  
Sbjct: 493 --SLSSQQAHFIDRISTTSQLLMQLIGDILDISKIEANQIQIHNQPFDLLELVQQTVQLY 550

Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                +  + +  I D  +  + + D  RL QI   +LSNA+ F+ +G+  I     +  
Sbjct: 551 QGIAQQKGLLLFAIIDPNVQANRIGDSARLQQILGNLLSNAIKFTHRGTVTIELKRSNKN 610

Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +  V + G  I PE   K     + +++      G GLGL I    I L  G +S+ S
Sbjct: 611 NILLRVSDTGVGISPEQQIKLFEPFYQAHSEIHAYGGTGLGLFICSKLIKLMDGQISLQS 670


>gi|189192132|ref|XP_001932405.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187974011|gb|EDU41510.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 389

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 19/237 (8%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K EA R     K+ F+ +VS+ELR+PL  +IG ++LLK S    LN +Q+ Y + I   +
Sbjct: 30  KEEAARA----KSLFLANVSHELRTPLNGVIGMSELLKAS---PLNGEQTGYADSIRVCA 82

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+++ND+LD + ++AG M +    I LN+ + EV +++A    E    +K I   +L
Sbjct: 83  DTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERG--LKTIEQLEL 140

Query: 678 GS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSI 730
                 +AD  RL QI   +LSN+  F+ +GS  +       G    D   SV + G  I
Sbjct: 141 NPEMLVMADPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGI 200

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
           P++  + +F  F  + ++      G GLGLSI ++ I N+  G V + S     TT+
Sbjct: 201 PDEQKQKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTV 257


>gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1242

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 113/217 (52%), Gaps = 16/217 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  ++G T+LL+ ++L    SKQ ++V+ +  S   LL +++DIL
Sbjct: 563 KSDFLARMSHEIRTPMNGVLGMTELLQRTRL---TSKQRKFVDTVYRSGQTLLVIIDDIL 619

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682
           D + ++AG + L      L+ LL++V       + E N R K +      +D        
Sbjct: 620 DFSKIEAGKLTLERIDFNLHQLLDDV-----VALLEPNARRKALELVYRRADSVPQRMRG 674

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI + +L NA+ F+  G   +  +  D+G  +F++ ++G  IP D+   +F  F
Sbjct: 675 DPVRLRQILTNLLGNAIKFTEHGHVGLSASYSDDGRIVFTIADSGIGIPPDISAQLFRPF 734

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
                   R+  G GLGL I      + GG +++ S+
Sbjct: 735 QQADSSTARKYGGTGLGLVISRQLAEMMGGTLTLDSA 771


>gi|289624367|ref|ZP_06457321.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646634|ref|ZP_06477977.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868649|gb|EGH03358.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 998

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII---GFTDLLKTSKLGSLNSKQSQ 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II   G       S   S N    +
Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAISDTHSENRNIRR 579

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A     + +F V ++G 
Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRINIDAVASENEVLFKVSDDGI 698

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  + R+
Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFRL 757

Query: 789 PSKE 792
           P  E
Sbjct: 758 PMHE 761


>gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
 gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
          Length = 1331

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
 gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
          Length = 576

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K ++++  FV +VS+ELR+P+T+I GF++ L     G++N K++   ++  I   S  
Sbjct: 342 LKKLEQMRKDFVANVSHELRTPITSIKGFSETLLD---GAMNDKETLEMFLNIILRESDR 398

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+ D+LDL+ ++    +LN     + +LL EV   +  K  + +I + + +D  + +
Sbjct: 399 LQSLITDLLDLSKMEKQGFQLNVHETDMKELLIEVITILEKKPEKKDIELVLHADEAVLA 458

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            V D  R+ Q+F  ++ NA+ ++  G  V +   + +   +  V++NG  I E     +F
Sbjct: 459 EV-DSFRIKQVFINLIGNAITYTPAGGEVSVSLKQSDSVIVIEVRDNGIGIEESEFPRIF 517

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            RF  V  A      G GLGL+IV+  I  HGG + + S  +EG T
Sbjct: 518 ERFYRVDKARSRDSGGTGLGLAIVKHLIEAHGGTIGVESKVNEGTT 563


>gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
 gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
          Length = 1331

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|53713792|ref|YP_099784.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216657|dbj|BAD49250.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 812

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%)

Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           PN +  L  VN   +V+ E     RA  +K E   +++ +K++F+ ++S+E+R+PL  I+
Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLL T       ++Q ++   I  ++T+LL L +DI+DL+ +DAG  +     + L 
Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLY 665

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
                + Q +  K+ E  + +++  D  L + F AD   L Q+ +  +SNA+ F+ +G+ 
Sbjct: 666 QFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRGTI 724

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            +             V++ G  I  +  ++VF+RF+      Q  G GLGL + +S I  
Sbjct: 725 TVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782

Query: 768 HGGHVSISS 776
            GGH+ + S
Sbjct: 783 MGGHIGVIS 791


>gi|320162274|ref|YP_004175499.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319996128|dbj|BAJ64899.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 470

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 15/247 (6%)

Query: 553 RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +   N+ L + + +   +  F+  VS+ELR+PLT I G   L++  K G   S QS  
Sbjct: 216 RLIQAFNQTLSRLESLFTTQRRFIADVSHELRTPLTVIKGEVSLMRKMKCGDEESLQS-- 273

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +    L  LV ++L LA  ++G + L+   + ++ +L EV Q + T   E  + +
Sbjct: 274 ---IESEVDRLSRLVGNLLLLAQAESGRLPLDLKPVEMDTILLEVFQQMRTLAGE-KVHL 329

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++++  ++ S + DR RL Q+   I+ NA+ ++  G  V L   + +G    +V + G  
Sbjct: 330 EIVTLEQV-SLIGDRDRLKQVLLNIVGNAVQYTPAGGVVTLGLTQTDGYARITVSDTGPG 388

Query: 730 IPEDMCKSVFNRFVSNAH-----RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IPE+    +F RF          +GQ  G GLGLSI    + +HGG + ++S     TT 
Sbjct: 389 IPEEDLPYIFERFYRGEKSRTRSQGQASGFGLGLSIAYWIVQVHGGKIDVTSVVGKGTTF 448

Query: 785 NCRIPSK 791
              +P K
Sbjct: 449 IIHLPLK 455


>gi|307943374|ref|ZP_07658718.1| putative sensor histidine kinase transmembrane protein [Roseibium
           sp. TrichSKD4]
 gi|307773004|gb|EFO32221.1| putative sensor histidine kinase transmembrane protein [Roseibium
           sp. TrichSKD4]
          Length = 796

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 12/257 (4%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           DS +  +I   P  QT+L   +VTD    E  L     +   ++E K+ F+  VS+E+R+
Sbjct: 239 DSPVRDAISQEPLVQTVLR--DVTDRRIIEEELLAARHSAESSNEAKSRFLATVSHEIRT 296

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G   LL+ ++L     +Q  Y+E +  S   LL L++++LD + V+AG + +  
Sbjct: 297 PLNGILGMAALLRDTRL---TKEQIAYIEALETSGETLLFLIDEVLDFSKVEAGKLDIQT 353

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDF 701
           +   L+ L + V + +A K H  ++ I    D +L   V  D  R+ QI   +  N + F
Sbjct: 354 APTRLSSLADSVVELLAPKAHAKSLEIGTRIDPRLPETVTLDATRVRQILFNLAGNGVKF 413

Query: 702 SSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           +  G   I     +NG      +  V++ G    +   + +F  F    H   R+  G G
Sbjct: 414 TDTGGVSIEVDGVENGSDGSLLVIQVRDTGIGFNDAEAERLFEEFEQVDHGPARKFGGTG 473

Query: 756 LGLSIVESFINLHGGHV 772
           LGL+I +    L GG +
Sbjct: 474 LGLAIAQRLTQLMGGQI 490


>gi|197285590|ref|YP_002151462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis HI4320]
 gi|194683077|emb|CAR43602.1| two component system, [includes both sensor kinase and response
           regulator domains] (capsular synthesis regulator
           component C) [Proteus mirabilis HI4320]
          Length = 942

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 132/255 (51%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+++  V+ ER+L     A  +A++ K+ F+  VS+ELR+PL  IIG  +LL++ 
Sbjct: 439 AICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSL 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              + N + ++ ++ +  SS++LL +++DILD + +++  +K++        +++ V  +
Sbjct: 499 ---TQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISN 555

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + + ++ I    +  +   V  D  R+ Q+ S +L+N++ F++ G  + L   RD 
Sbjct: 556 YLPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-CITLHLYRDE 614

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               F + + G  I E M   +F  F  VS        G GLGL+I E  INL  G +S+
Sbjct: 615 YYLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISV 674

Query: 775 SSSDEGVTTINCRIP 789
            S +   +    RIP
Sbjct: 675 VSQENVGSRFTVRIP 689


>gi|192361523|ref|YP_001983038.1| GacS [Cellvibrio japonicus Ueda107]
 gi|190687688|gb|ACE85366.1| GacS [Cellvibrio japonicus Ueda107]
          Length = 974

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 130/234 (55%), Gaps = 14/234 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISAS 616
           + EAL +A  +K+ F+ + S+E+R+PL  I+GF +L LKT     LN KQ +Y+E I  S
Sbjct: 303 RKEAL-EASRVKSEFLANTSHEIRTPLNGILGFINLALKTE----LNEKQREYMETIRDS 357

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDG 675
           +  LL ++N ILD + +++G + L+Y+ + +   ++EV   +A   HE N++ I  I   
Sbjct: 358 AQNLLTVINGILDFSKIESGKLTLDYAPLPIRKTVDEVLHMLAPDAHEKNLQLITYIEPC 417

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIF--SVKNNGSSIP 731
              + + D  R  Q+ S +++NA+ +S  G+ +  I  A R         +V + G  + 
Sbjct: 418 IPRNLLGDALRFKQVLSNLVTNAIKYSDAGNIIVDISIAQRQETQITLKVAVTDQGIGLS 477

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT 782
           ++  +++F+ F  V ++   +  G GLGL+I +  +  +HG    +S+ ++G T
Sbjct: 478 QEEQENLFSAFSQVDSSSSREHDGTGLGLAICKGLVERMHGEIGVVSAPEQGST 531


>gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
 gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
          Length = 643

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 119/256 (46%), Gaps = 7/256 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           T V VT  V   R   ++ +  R    +ADE+K  F+  VS+ELR+PL  IIGF+D+L  
Sbjct: 319 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLSG 378

Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               SL+ ++S +Y   I+ S   LL++VN +LD++ +  G        + +  L+    
Sbjct: 379 EGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRSCC 438

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +  K   + I +         + VAD +   Q+   ++SNA+ F+ +G  V +   R 
Sbjct: 439 DLMRLKADASGIALVSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 498

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  V +NG  I E     + + F      +     G GLGLS+V     LHGG VS
Sbjct: 499 GAYLDVVVSDNGIGITEADLPRLGDPFFQAGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    T +   +P
Sbjct: 559 VESAPGKGTAVTVTLP 574


>gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
 gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
          Length = 1331

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|91975926|ref|YP_568585.1| histidine kinase A-like [Rhodopseudomonas palustris BisB5]
 gi|91682382|gb|ABE38684.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris BisB5]
          Length = 1201

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 175/368 (47%), Gaps = 33/368 (8%)

Query: 437  GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            G  +D  +EG+ +F  DGRI   N +  +L+  + + L      RNIA     +  ES+G
Sbjct: 840  GAILDTTAEGILMFDADGRISACNRSAEALFGYDGDDLV----QRNIA---ELFAPESNG 892

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSD-------SVLEYSIIPL--------PNAQTMLT 541
                 A++  FD  +    G+ E L D        V E  ++PL        P+      
Sbjct: 893  -----AVLDYFDSVKA---GSAESLLDHGLEALGRVREGGLLPLTMTIGRTQPDGPNFFA 944

Query: 542  -FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             F +++ + + E  L +  +   +A   K   +  +S+E+R+PL  IIGF +++   + G
Sbjct: 945  VFRDLSQARKIETELNQVRKLAERAAGAKADVLARLSHEIRTPLNAIIGFAEVMIEERFG 1004

Query: 601  SL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L N +  +Y++ I AS   ++ +V+D+LDL+ ++ G ++L++++  LN+++ +    + 
Sbjct: 1005 ALGNDRYGEYMKDIRASGERVIGIVSDLLDLSQIETGKLELSFTSQNLNEMVEQCVAVMQ 1064

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGD 718
             + +   I I+      L + VAD Q L QI   ++  ++  ++ G  VI+  A  D G+
Sbjct: 1065 PRANRERIIIRTSLAHLLPTVVADPQALRQIVMNLIGTSIHLANAGGQVIVSTALSDFGE 1124

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +  V++ G  + E    +    F + A   +    G+ LS+ ++ +  +     I S+ 
Sbjct: 1125 VVLRVRDTGQRLNESEIVAALQPFNTPAPSDRSETSGVSLSLTKALVEANRAKFHIKSAP 1184

Query: 779  EGVTTINC 786
            +  T I  
Sbjct: 1185 QSGTLIEV 1192


>gi|312172971|emb|CBX81226.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora ATCC BAA-2158]
          Length = 987

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    
Sbjct: 475 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 531

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +   
Sbjct: 532 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQREFSPREVIAHITANYLA 591

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              +  + +    D  +   +  D  RL Q+ S +L+NA+ F+  G  ++   A   GD+
Sbjct: 592 MAVKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 649

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           + F V+++G  IP      +F+ F       QR  +G GLGL+I E  +N+  G + + S
Sbjct: 650 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVES 709

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 710 EPGMGSQFIIRIP 722


>gi|310780117|ref|YP_003968449.1| histidine kinase [Ilyobacter polytropus DSM 2926]
 gi|309749440|gb|ADO84101.1| histidine kinase [Ilyobacter polytropus DSM 2926]
          Length = 630

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 6/235 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E    A+  KN F+  +S+E+R+PLT IIG++ +LK S+L     ++   +E I 
Sbjct: 151 LKSAKEHAEAANRSKNEFLAKISHEMRTPLTPIIGYSRMLKKSELSDYTKEK---LETIH 207

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LLN  N++LD + ++AG ++LN+    +     E+      K  E NI+ ++   
Sbjct: 208 NSGVKLLNFTNELLDFSKIEAGTVELNFEPFGIKKFFKEIYNEHCEKAEEKNIQFQIELP 267

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  +D+ +L ++   ++ NA+ ++ KGS +     RD+    F V ++G  I +  
Sbjct: 268 QNDIIIYSDKMKLYEVVKNLVHNAIKYTKKGSVLCTVEIRDSL-LCFDVYDSGIGISDKN 326

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F       Q  G GLGLSI +  I +  G + + S     TT N  IP
Sbjct: 327 INYIFESF--GQINKQSAGAGLGLSITKRLIEILKGDIKVESKLGIGTTFNVSIP 379


>gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
 gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
          Length = 646

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           T V VT  V   R   ++ +  R    +ADE+K  F+  VS+ELR+PL  IIGF+D+L  
Sbjct: 319 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGG 378

Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               SL+ ++S +Y   I+ S   LL++VN +LD++ +  G        + +  L+    
Sbjct: 379 EGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCC 438

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +  K   + I +         + VAD +   Q+   ++SNA+ F+ +G  V +   R 
Sbjct: 439 DLMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 498

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  V ++G  I E     + + F  V   +     G GLGLS+V     LHGG VS
Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    T +   +P
Sbjct: 559 VESAPGKGTAVTVTLP 574


>gi|169600681|ref|XP_001793763.1| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15]
 gi|160705494|gb|EAT89915.2| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15]
          Length = 2299

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 12/236 (5%)

Query: 554  ALTEKNEALRK-ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            A+  +N  L++ A + K+ F+ +VS+ELR+PL  +IG ++LLK S    LNS+Q+ Y + 
Sbjct: 1802 AIAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKAS---ILNSEQTGYADS 1858

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671
            I   +  LL+++ND+LD + ++AG M +    + L + + EV +++A    E  ++ ++ 
Sbjct: 1859 IRVCADTLLSIINDLLDYSKLEAGKMSVMEMPLSLTETITEVVRALAYTNAERGLKTVEQ 1918

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNG 727
            +        + D  RL QI   +LSN+  F+ KGS     VI +   +  D   SV + G
Sbjct: 1919 LELNPEMMVMGDPVRLHQILMNLLSNSYKFTPKGSVTVRAVIDQETDEYADVTISVIDTG 1978

Query: 728  SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEG 780
              IP +  K +F  F  + ++      G GLGLSI ++ I N+  G V + S D G
Sbjct: 1979 IGIPAEQKKKLFLPFSQIESSSSRSYGGTGLGLSICKALIENVMHGKVWLDSRDSG 2034


>gi|297585568|ref|YP_003701348.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297144025|gb|ADI00783.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 608

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 164/344 (47%), Gaps = 38/344 (11%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           H+++GV     +G+I L N     L  +  EE        + N+A     +   SD +++
Sbjct: 271 HMTDGVIATDREGQIILMNRRAEELTGYSQEEAIGYDLVGMLNLA----HFMKLSDLYNM 326

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
              I+  F+   + L          +LE  +S+I   N +       + D    ER   E
Sbjct: 327 DDPILLDFEHHDEEL----------ILEANFSVIEKENGRKNGLIAVLHDVTEQERIEQE 376

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISA 615
           + E           FV +VS+ELR+PLT++  + + L     G++N      Q+++  S 
Sbjct: 377 RRE-----------FVANVSHELRTPLTSMKSYLEALLD---GAVNDSDVAPQFLQVTSN 422

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
            +  ++ LVND+L L+ +DA    +  + + + ++++ V         + NI+ +  + D
Sbjct: 423 ETDRMIRLVNDLLQLSKMDARDDHMLMAEVNIVNMIHHVIDRFEMSNKQENIQFRRRLPD 482

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L S + DR +L+Q+   ++SNA+ +S +G  + +   ++    I SVK+ G  IP++ 
Sbjct: 483 VPL-SVMGDRDKLVQLLDNMVSNAVKYSPEGGVITITLKQEKERLIVSVKDEGVGIPKEN 541

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              VF+RF  V  A      G GLGL+I +  + +HGGH+ +SS
Sbjct: 542 LPHVFDRFYRVDKARSRSLGGTGLGLAIAKEIVEVHGGHIWVSS 585


>gi|66044540|ref|YP_234381.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255247|gb|AAY36343.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1209

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 14/258 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+  + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 690 WIDITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 748

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L +  SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L + V +  + +
Sbjct: 749 LGTMPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQ 808

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  + +++  S    G +  D  RL Q+   +L NA+ F+ +G+ V+ L    D+ + 
Sbjct: 809 AREKGVELRLEFSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVRLDVTSDSPES 868

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                 ++++G  I     + VF  F      + AH G   G GLGLSI    + L  G 
Sbjct: 869 TRVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYG---GSGLGLSITRQLVELMRGD 925

Query: 772 VSISSSDEGVTTINCRIP 789
           +S+ S     T +   +P
Sbjct: 926 ISLHSEPGKGTLVTIDLP 943


>gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1083

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 12/250 (4%)

Query: 536 AQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           A+ + +F+N  +    ER   L    EA   A+  K+ F+ ++S+E+R+PL  I+GF  +
Sbjct: 412 AEELCSFINNLEEKVKERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSI 471

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ +    L+S Q  Y+E I  SS  LL ++NDILD++ ++AG M++      +  ++  
Sbjct: 472 LEKT---DLDSTQQDYIETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIES 528

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
                  K  E  + + ++ +  + S  V D  ++ QI S ++SNA+ F+  G   I   
Sbjct: 529 TIFLYDAKAREKGLELNMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTHNGEVFIEVS 588

Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            +K         F +++ G  + E+    +F  F        R+  G GLGL+I +  + 
Sbjct: 589 VIKETNTEVQLYFEIRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAICKKIVE 648

Query: 767 LHGGHVSISS 776
           + GG +S+ S
Sbjct: 649 MMGGTISVKS 658


>gi|331700135|ref|YP_004336374.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954824|gb|AEA28521.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 1025

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 10/215 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  +IG T+LL  +   SL  +Q  Y   I+ S+  LL ++ND+L
Sbjct: 378 KSAFLANMSHEIRTPMNAVIGMTELLSAT---SLTEEQQDYTGVIAQSADGLLTVINDVL 434

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++AG ++L+       +++ +    +A +     + +   +DG   + V  D  RL
Sbjct: 435 DFSKIEAGKLELDRDAFDPREVIEDALGLLAPRAAAKGLELVAAADGVPPAAVFGDPGRL 494

Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI   ++ NA+ F+ +G  V+ L A R + D      +V + G  IP +    +F  F 
Sbjct: 495 RQILVNLVGNAVKFTERGEVVVTLSAVRADDDRWRLRIAVADTGIGIPAEQIPRLFRSFS 554

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  RR  G GLGL I      L GG V ++S
Sbjct: 555 QVDESATRRHGGTGLGLVISRRLAELMGGTVEVAS 589


>gi|307307214|ref|ZP_07586951.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|306910269|gb|EFN40701.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1139

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKA 565
           ++R  L  T +  ++  +E  ++P+     +L   F+ ++++   +E  L    E     
Sbjct: 454 NKRIELLATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELG 513

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +++K+ F+  +S+E+RSPL  I+G  +LL  SKL   N +Q  +      + + LLN +N
Sbjct: 514 NKVKSRFLATMSHEIRSPLNAILGGVELLLHSKL---NKEQRIHANITREAGSALLNTIN 570

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG M L  +    + L+ +V Q +  K ++  +++    D  +  + + DR
Sbjct: 571 DILDFSKIEAGQMVLESNEFEPDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDR 630

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIPEDMCKSVFN 740
           QRL Q+   ++ NA+ FS  G+  +     DN   +      V ++G  I E+    +F 
Sbjct: 631 QRLNQVIHNLVDNAIKFSVSGTITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFK 690

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
            F  V + H    +G GLGL+I    I + GG + + S  D+G
Sbjct: 691 EFSQVHDTHNTNYKGTGLGLAICRELITMMGGEIELESELDKG 733


>gi|288959296|ref|YP_003449637.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911604|dbj|BAI73093.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 919

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 16/247 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R E  L+        A  +K+ F+  +S+E+R+PL  +IGF DLL  ++   L 
Sbjct: 353 DVTERKRYEGELSAARAEAEAATRVKSEFLASMSHEIRTPLNGVIGFADLLLATE---LT 409

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q QYV     +   LL ++ DILD + ++AG ++L      L+ LL + +  ++    
Sbjct: 410 PEQRQYVALQREAGRGLLAIIGDILDYSKIEAGKLELEERAFDLHRLLRDCRDLMSNAAS 469

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  + +++   G +  FV  D  R+ QI   ++ NA+ F+ +GS ++             
Sbjct: 470 QKGLLLQLSLAGSVPRFVHGDEARIRQILLNLVGNAVKFTERGSVLVSVGLLTGPGEGGG 529

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                   FSV + G  IP     ++F RF        RR  G GLGL I +  + L  G
Sbjct: 530 EGAPVLLRFSVSDTGPGIPPADQANLFQRFSQGDRSTTRRYGGTGLGLIISKQLVELMRG 589

Query: 771 HVSISSS 777
           H+ + SS
Sbjct: 590 HIGVQSS 596


>gi|254480157|ref|ZP_05093405.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214039719|gb|EEB80378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 509

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 115/229 (50%), Gaps = 13/229 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYISASSTILLNLVNDIL 628
           F+ +VS+ELR+PL  IIG++++L           + Q+   ++ I  S   LL L+NDIL
Sbjct: 275 FLANVSHELRTPLNAIIGYSEMLHDELSDEREVDRPQFQQDLDKIIRSGRQLLTLINDIL 334

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ ++ G M L+  T    +LL +   SI  ++ E N +++      L +   D  +  
Sbjct: 335 DLSKIETGKMALHCETFQPGELLEQACDSITPQLRERNNQLEKPDFESLPTLYNDAAKFR 394

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFV--- 743
           QIF+ +LSNA  F++ G   +L    +   G    +V++ G  + ED    VF  FV   
Sbjct: 395 QIFTNLLSNACKFTNAGYITVLATEPEEHPGWVEIAVRDTGIGMNEDQQSQVFEAFVQAD 454

Query: 744 --SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             ++A+ G   G GLGL+I   +  L GG + + S     +T    +PS
Sbjct: 455 ASTSANYG---GTGLGLAICRDYCQLMGGTIRVESQPGNGSTFTVLLPS 500


>gi|119490613|ref|ZP_01623018.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106]
 gi|119453778|gb|EAW34935.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106]
          Length = 663

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 143/276 (51%), Gaps = 30/276 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD+  A+  L +  EA   A++ K+ F+  +S+ELR+PL  IIG++DLL+        
Sbjct: 372 DITDNKLAQIELQQAKEAAEAANQAKSEFLASMSHELRTPLNAIIGYSDLLREDAEDYGY 431

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     +E I +S   LL+L+ DILD++ +++G M L      +  L+NEV+  I   ++
Sbjct: 432 TDFVPDLEQIKSSGLHLLSLIQDILDISKLESGEMNLYLEHFDIATLINEVQAIIQPLVN 491

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNG- 717
           +N  + K+     +GS  ADR ++ Q    +LSNA  F+ +G TV LK  R      NG 
Sbjct: 492 QNQNQFKIDCVQPIGSMYADRTKVKQALLNLLSNAAKFTKEG-TVTLKVTRTLFPLQNGQ 550

Query: 718 --------------------DFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGV 754
                               D++ FSV++ G  +  +  + +F+ FV   N+   Q  G 
Sbjct: 551 THSDPKSINHSHHSEKRLSEDWVTFSVEDTGIGMTPEQVEKIFDPFVQADNSTTKQYGGT 610

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGLSI + F  +  G +++ S+ +  +T + ++P+
Sbjct: 611 GLGLSISQRFCEMMMGKITVESTIKVGSTFSIKLPA 646


>gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
 gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
          Length = 1126

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 147/336 (43%), Gaps = 37/336 (11%)

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           ++ P  R  W  E  R+S G   + + +T        D  D    +  SF   ++S++  
Sbjct: 372 ITAPLLRLTWAAE--RVSAGDLDQEMIST--------DRKDEIGRLAVSFARMQRSIREK 421

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHV 576
           ++L+ D                       + + A  A  + KN  L  AD++K+ F+   
Sbjct: 422 IQLIKDQ---------------------NEELEANLATIQLKNNELEAADKLKDEFLATT 460

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL  ++G  + L T   G +++     +E I  S   L +LVND+LD   +  G
Sbjct: 461 SHELRTPLHGMVGIAEALYTGANGPISASHRHQLEIIINSGQRLTSLVNDLLDYHKMRHG 520

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            + +N     L+   + V +     +   +IRI    D  L     D QRL Q+   ++ 
Sbjct: 521 NLDINKHVTDLSSATSLVLELSQHLLGNKSIRIINQVDKSLPVVFVDEQRLEQVLYNLIG 580

Query: 697 NAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRG 753
           NA+ ++S+G  VI  +  D   F+   V + G  IP D  + +F   +   H     R+G
Sbjct: 581 NAIKYTSEGKIVISASVVDQ--FLRVQVVDTGHGIPADELEHIFEPLIQAGHDSNRYRQG 638

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI    I L GG + +SS      T +  +P
Sbjct: 639 SGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 674


>gi|46201466|ref|ZP_00054984.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 372

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 127/250 (50%), Gaps = 7/250 (2%)

Query: 534 PNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           P A  +  F+ +  D   A+R L  KN  L ++ E +N  +   +++LR+PL  I GF +
Sbjct: 104 PTAVGLDDFIRLNNDLTNAQRDLASKNAELARSVEWRNLILGMAAHDLRNPLNTIGGFAE 163

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+     +L   +++ +++I  +S  +L ++ D LD + ++ G   L    + +  L  
Sbjct: 164 LLQERIGETLPVMEARALDHIRQASGYMLRIIEDFLDFSRIETGHFTLESEPVDILSLAI 223

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV + I +   E+ + ++V +   +    ADR RL Q+ S ++ NA+ F+  GS V +  
Sbjct: 224 EVAERITSFADEHAVSVQVKAPAPIPIVPADRNRLAQVLSNLIGNAVKFAPNGSIVTVSI 283

Query: 713 A-RDNGDFI-FSVKNNGSSIP---EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
              +  D +   V++ G  IP    D     F+R  + +  G+  G GLGL+I +S I+ 
Sbjct: 284 VFHEPSDTVSVRVQDQGPGIPALERDKLFRPFSRTSAQSVTGE-PGTGLGLAICKSVIDA 342

Query: 768 HGGHVSISSS 777
           HGG + +  +
Sbjct: 343 HGGKIGLDGT 352


>gi|320160794|ref|YP_004174018.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994647|dbj|BAJ63418.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 414

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 4/231 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA  K   ++  F+  +++ELR+PL  I G+T  L  S        Q ++++ I   +  
Sbjct: 171 EAQSKESRVQEDFISTITHELRTPLGFIKGYTTTLLRSDTEWDPQMQQEFLKIIDQETDR 230

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ ++LD A + +G +K+ +  + L+ L+    + +  +MH       + +D  L  
Sbjct: 231 LQELIENLLDSARLQSGTLKMIFQPVRLDSLVRSTIEHL--RMHHPTFTAHLETDTPLSP 288

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +R+ Q+   +  NA+ ++  GS V +K    +G+   +++++G  IP+     VF
Sbjct: 289 IEADPKRINQVLENLFHNAIKYAP-GSDVWVKIKEQDGEITLTIEDHGPGIPQRYLPFVF 347

Query: 740 NRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  N        G GLGL I +  I  H G++ ++S     TT   R+P
Sbjct: 348 ERFFRNPDASPNIHGTGLGLFICKKIIQAHHGNIQVNSIQGKGTTFIIRLP 398


>gi|299146759|ref|ZP_07039827.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517250|gb|EFI41131.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 869

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +  G  + + +Q++
Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTSEEIAQFI 687

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 688 GTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVL 747

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNG 727
            + +        D  RL Q+ + +++NA  F+S G   I     D+   G     V++ G
Sbjct: 748 RMPESDKIYLTTDNVRLQQVVNNLINNAAKFTSSG--FITFGYEDDEVPGYTRIFVEDTG 805

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I E+  + +F RF    +  Q  G GLGLSI ++ I    G +S++S     T    R
Sbjct: 806 VGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVR 863

Query: 788 IPS 790
           +P+
Sbjct: 864 LPN 866


>gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
 gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
          Length = 646

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           T V VT  V   R   ++ +  R    +ADE+K  F+  VS+ELR+PL  IIGF+D+L  
Sbjct: 319 TVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGG 378

Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               SL+ ++S +Y   I+ S   LL++VN +LD++ +  G        + +  L+    
Sbjct: 379 EGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCC 438

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +  K   + I +         + VAD +   Q+   ++SNA+ F+ +G  V +   R 
Sbjct: 439 DLMRLKADASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRG 498

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  V ++G  I E     + + F  V   +     G GLGLS+V     LHGG VS
Sbjct: 499 GAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVS 558

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    T +   +P
Sbjct: 559 VESAPGKGTAVTVTLP 574


>gi|114762251|ref|ZP_01441719.1| hypothetical protein 1100011001331_R2601_14970 [Pelagibaca
           bermudensis HTCC2601]
 gi|114545275|gb|EAU48278.1| hypothetical protein R2601_14970 [Roseovarius sp. HTCC2601]
          Length = 497

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 141/345 (40%), Gaps = 14/345 (4%)

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
           +W  + A  + W+N  +       G     A      L  +  +   ++ + L  + C  
Sbjct: 153 IWMTNSAHVVTWSNTFFDDLRAQAGAAPGSA---PFSLHPDPAQPLRVTRTRLGGDGCAP 209

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAID--VSKEITVNDQLTHTYEILHNLTVAIAIFD 323
            S  E       +  RV + +      ID  ++ E T    L     I  +L +A+A+FD
Sbjct: 210 ASWYE------VQSCRVSDGWLHYAQNIDPVIAAETTQRTFLQTLTRIFAHLPIALAVFD 263

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-- 381
           + R L   N + ++L ++   FL   P+     + LR    LPE  ++++W++ +  V  
Sbjct: 264 KERRLVLFNPALLDLTQLPADFLTGRPNLLSFFDMLRDRQVLPEPRDYRSWRDKLGEVIA 323

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
             SS+ + +TW LP+G T  +    +P GG  ++FE+++ +V L   +   ++     +D
Sbjct: 324 AASSDHYVETWSLPSGATYRMTGRPHPDGGIAFLFEDISAEVSLTRHFRQELETSQSVLD 383

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            L E +AVF   G++   N  +R +W ++         I+         +  S  W    
Sbjct: 384 SLEEAIAVFSRTGKLAFCNAPYREMWGSDPEESPADLGIKEATRHWQAAFRPSPIWGDLR 443

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +T  + +R      L       L     PLP   TM+ F  + 
Sbjct: 444 EFVT-LERDRAPWDAELHDHDGQPLRCLAEPLPGGATMVRFCQLP 487


>gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 699

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 16/274 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++ P+ +   ++  V V    R ER     L    E    A   K  F+  +S+E+R+PL
Sbjct: 171 TVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPL 230

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T ++G  DLL  ++L   +S+Q QYV    A+   LL+L+N ILDL+ ++AG +++    
Sbjct: 231 TAVLGMADLLDKTRL---DSQQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVE 287

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L+ L+ +  + +  +  +  +     S       V  D  R+ Q+   ++ NA+ F+ 
Sbjct: 288 FDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTE 347

Query: 704 KGSTVI----LKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           +G  ++    L AA       F  +V + G  IP    + +F  F        RR  G G
Sbjct: 348 EGRVMVELACLPAAPPYPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTG 407

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I    + + GG +S+ S + G +T    IP
Sbjct: 408 LGLAISRKLVTMMGGQISLVSREGGGSTFTMEIP 441


>gi|326776200|ref|ZP_08235465.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
 gi|326656533|gb|EGE41379.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1821

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1323 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1382

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1383 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1442

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1443 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEA 1502

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I       +F  F        R+  G GLGLSI      
Sbjct: 1503 GSLRDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1562

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1563 LLGGEIHAASEPGRGSTFTLYLP 1585


>gi|291571152|dbj|BAI93424.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 917

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 127/251 (50%), Gaps = 19/251 (7%)

Query: 546 TDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           T  +R E+   E  +A   A+   + K+ F+ H+S+ELR+PL  I+GFT L+        
Sbjct: 418 TLEIRVEQRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQISLEN 477

Query: 603 NSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           N   + + ++   I  S   LL L+ND+LD++ ++AG + LN +   L  LL+ +++  +
Sbjct: 478 NHNLNNFRDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLEEMFS 537

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +     +++  +    L  ++ +D Q+L Q+   ++ NA+ F+  GS  +     D  +
Sbjct: 538 IRAASEGLKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFTENGSVTLHSQVIDPPN 597

Query: 719 FI-----------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766
            I           F+V++ G  I       +F  F+ +   R  ++G GLGL I + F+ 
Sbjct: 598 QIDNPQPPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQQGTGLGLPISQQFVQ 657

Query: 767 LHGGHVSISSS 777
           L GG +S+SS+
Sbjct: 658 LMGGDISVSST 668


>gi|239944730|ref|ZP_04696667.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 15998]
 gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 11379]
          Length = 1809

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1313 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1372

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1373 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1432

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1433 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEA 1492

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I       +F  F        R+  G GLGLSI      
Sbjct: 1493 GSLRDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1552

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1553 LLGGEIHAASEPGRGSTFTLYLP 1575


>gi|225569244|ref|ZP_03778269.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM
           15053]
 gi|225162043|gb|EEG74662.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM
           15053]
          Length = 812

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 34/260 (13%)

Query: 542 FVNVTDSV---RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFT 591
           F+++TD     + ++ LTE+ +ALR A       ++ K  F+  +S+E+R+P+  I G T
Sbjct: 257 FIDITDITELRQMQKKLTEQADALRDALSVAEHANQAKADFLSRMSHEIRTPMNAITGMT 316

Query: 592 DLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               T    ++N +Q  +  +E I++SS  L+ L+ND+LD++ +DAG MK+ + T  L +
Sbjct: 317 ----TIAAANINDRQRVADCLEKIASSSKHLMTLINDVLDMSKIDAGKMKIAHETFDLQN 372

Query: 650 LLNEVKQSIATKMHENNIRIKV----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           +   +   I  +     ++  V    I+D  L     D  RL Q+   +LSNA+ F+ +G
Sbjct: 373 VTESITAIIYPQADAKGLKFSVPLVDITDTVL---TGDALRLNQVLINLLSNALKFTPEG 429

Query: 706 STVIL-------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             V L       KA R      F+V + G  + ++  K +F  F   +    R   G GL
Sbjct: 430 GAVRLEIRQLQKKAGRVR--LRFTVSDTGIGMSQEFMKHLFTPFEQESTATGRSAGGTGL 487

Query: 757 GLSIVESFINLHGGHVSISS 776
           G+ I ++ + L GG VS+ S
Sbjct: 488 GMPITKNLVTLMGGTVSVRS 507


>gi|126659478|ref|ZP_01730611.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
 gi|126619212|gb|EAZ89948.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
          Length = 2001

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 14/244 (5%)

Query: 550  RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            R E    E  EA +KA+   + K+ F+ ++S+ELR+PL  I+G+  +LK     +L S Q
Sbjct: 1527 RVEERTAELAEAKQKAETANQAKSEFLSNMSHELRTPLNGILGYAQILKRD--SNLTSFQ 1584

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Q ++ I  S   LL L+NDILDL+ ++A  M++    I     L+ V   I  +  + N
Sbjct: 1585 TQGLKIIHESGQHLLTLINDILDLSKIEARKMEIYPKGIHFPSFLDSVAGIIKMRAVDKN 1644

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIF 721
            I  K   D +L     AD +RL Q+   +L NA+ F+ +G        ++   +     F
Sbjct: 1645 ILFKSEFDSQLPLGIQADEKRLRQVLLNLLGNAIKFTDRGQVTFRVNAIQTEANQAQIRF 1704

Query: 722  SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-D 778
             + + G  I  +    +F  F  + +  R +  G GLGL+I +  + L G  + +SS+  
Sbjct: 1705 EIVDTGVGITPEQATKIFQPFEQIGDIER-RAEGTGLGLAITQQLVELMGSELKVSSTVG 1763

Query: 779  EGVT 782
            EG T
Sbjct: 1764 EGST 1767


>gi|94313180|ref|YP_586389.1| periplasmic sensor signal transduction histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93357032|gb|ABF11120.1| periplasmic sensor signal transduction histidine kinase; putative
           exported protein [Cupriavidus metallidurans CH34]
          Length = 681

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  +A   +   K+SF+  +S+E+R+PL  I+G  +L++ S L   +++Q + V   
Sbjct: 416 ALAQARDAAEASARTKSSFLAMMSHEIRTPLQGILGLLELVEYSPL---SAEQRRQVRLA 472

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671
           S +   L  +++D+LD A +DAG ++L  + + L  L   V   +A +     ++++  V
Sbjct: 473 SEAGQALRQILDDVLDYAKMDAGRLRLALAPLDLRGLFANVLSLLAPRAQAKGLQLQQWV 532

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727
             D  +   VAD  RL QI   ++ NA+ F+  GS  +L +           + SV + G
Sbjct: 533 QPDVPV-QLVADGARLRQILLNLVGNAIKFTECGSVDLLASVEPTSAGEDVLVVSVADTG 591

Query: 728 SSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             I PED+ + +F  FV       RR  G GLGL+I      L GG + + S+    T +
Sbjct: 592 IGIAPEDIAR-LFTPFVQGESGPARRFDGTGLGLAISRQLAQLMGGELMLDSTLGVGTQV 650

Query: 785 NCRIP 789
             R+P
Sbjct: 651 MLRVP 655


>gi|307824658|ref|ZP_07654882.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307734312|gb|EFO05165.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1278

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 8/249 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++++  + E+ +    +    A+  K+ F+ ++S+ELR+P+  I+GF  LL+      LN
Sbjct: 882  DISERKQYEQEIIAARDEAESANNAKSEFLSNMSHELRTPMNAILGFGQLLEIE--AGLN 939

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q+ YV+ I  +   LL L+N++LDLA +++G + L+   +   +L+ E    I     
Sbjct: 940  EDQADYVDEILKAGHHLLELINEVLDLARIESGNINLSLEPLSCAELIGECLTLIKPIAQ 999

Query: 664  ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               +R   I+D  +G +V  ADR RL Q+   +LSNA+ ++     V+++ A  +G    
Sbjct: 1000 ---VRGITINDAAIGDYVIRADRTRLKQVLINLLSNAIKYNRPQGEVLVQVAVQDGFVRL 1056

Query: 722  SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             V + G  IP    + +F  F           G G+GL+I    + + GG + + S +  
Sbjct: 1057 EVSDTGYGIPATRRQELFQPFSRLGVEDADIEGTGIGLTISRRLMKMMGGAIGMDSEEGR 1116

Query: 781  VTTINCRIP 789
              T    +P
Sbjct: 1117 GCTFWIELP 1125


>gi|283851408|ref|ZP_06368689.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573146|gb|EFC21125.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 967

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 15/249 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T+  R E AL +  +    A++ K+ F+ ++S+E+R+P+  I+G   L   ++L S
Sbjct: 573 FTDMTERRRGEEALLQAKQEAEAANQAKSEFLANMSHEIRTPMNGIMGMIHL---ARLKS 629

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +    QY++    S+  LL +VND+LDL+ ++AG ++L  +   L        + +   
Sbjct: 630 ADPTILQYLDLADKSALHLLGIVNDVLDLSKMEAGKIRLAAAPFALRREFESAVEPLLVA 689

Query: 662 MHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDN 716
             E  +  +  ++D      + D  RL Q+ + ++ NA+ F+ KG       +   A + 
Sbjct: 690 AGEKGLVFEHGVADDVPDHVIGDAGRLRQVLTNLVGNALKFTGKGRIEVRVALAAGAAEP 749

Query: 717 G--DFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGH 771
           G    +F+V++ G  IP      +F  F    S+AH     G GLGL+I +  + L GG 
Sbjct: 750 GTRRLLFTVRDTGIGIPAKRLSRIFESFEQAHSSAH-ALYGGTGLGLTISKRLVELMGGE 808

Query: 772 VSISSSDEG 780
           + I+ S EG
Sbjct: 809 I-IAESREG 816


>gi|271967362|ref|YP_003341558.1| multi-sensor signal transduction histidine kinase
           [Streptosporangium roseum DSM 43021]
 gi|270510537|gb|ACZ88815.1| multi-sensor signal transduction histidine kinase
           [Streptosporangium roseum DSM 43021]
          Length = 360

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 167/362 (46%), Gaps = 37/362 (10%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D L +G+ V   DG +   N A   L     ++ + G H+R++ +     + + DG D 
Sbjct: 19  VDDLPDGLVVTDRDGHVLAVNRAATRLTGVTRDQAA-GRHLRDVFS-----FRDHDGRDW 72

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA----- 554
           +  + T      +S Q  L L +           P  Q ML    +    R ER      
Sbjct: 73  WKWLDTYGGLPTRSRQPELPLRT-----------PGGQEMLVAARLVR--RPERGGEVVR 119

Query: 555 --LTEKNEALR-KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
             +T ++   R + +  +   V  V++ELRSPLT++ GFT  L        ++++   +E
Sbjct: 120 VVITLRDAGARARLERSRADLVSTVAHELRSPLTSVKGFTATLLAKWTRFTDNQKLVMLE 179

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRI 669
            ++A +  +  L+ ++LD++ +++G ++++   +   D+    ++ IA ++   E   R 
Sbjct: 180 TVNADADRVTRLITELLDVSRIESGRLEIHRQVV---DIPARARKIIAGRVAAGEPEDRF 236

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  DG+L     D+ ++ Q+ + ++ NA+       TV +    +      SV++ G  
Sbjct: 237 RLEVDGELPETWLDQDKIDQVLANLMENAVRHGR--GTVTIAIEPNEWGVTVSVRDQGEG 294

Query: 730 IPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           IP ++   VF +F   NA R  R G GLGL IV+  I  HGG +S+    EG       +
Sbjct: 295 IPPELATRVFRQFWRGNARR--RGGTGLGLFIVKGLIEAHGGTISVQRGPEGGAEFRFMV 352

Query: 789 PS 790
           P+
Sbjct: 353 PT 354


>gi|227537041|ref|ZP_03967090.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243133|gb|EEI93148.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 437

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 11/261 (4%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           IIP+   + ++ +V     +  ++ + +K          K+ F+   S+EL++PLT+I  
Sbjct: 185 IIPIREQEVIVKWVGTFTDIDDQKQIEKK----------KDEFLSIASHELKTPLTSIKA 234

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +  LL+ +     +S  S+Y+  +    + L +L+ D+LD++ +D G +K+N       +
Sbjct: 235 YIQLLERTLNAEHSSSTSKYLNTVQNQVSKLNSLIADLLDISKIDNGKLKMNKKLFNFEN 294

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           LL+ V  +I      +NIRI+   D      + D  R+ Q+    L+NA+ +S     VI
Sbjct: 295 LLSNVVDTIYHTHENSNIRIEREGDAIDQPVLGDEIRIEQVLINYLTNAIKYSPDSKRVI 354

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLH 768
           +K  ++N      V + G  IPE   K++FN+F        + +G+G+GL I    I  H
Sbjct: 355 IKTEQENTQIKVDVTDFGIGIPEHKQKNIFNKFYRVEESSLKFQGLGIGLYICSEIIRQH 414

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G   I S     +T    IP
Sbjct: 415 NGTFGIQSQTGQGSTFYFTIP 435


>gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1084

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 132/245 (53%), Gaps = 19/245 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASS 617
           E    A+  K++F+ ++S+++R+P+  IIGFT L     L +++   +   Y+    ASS
Sbjct: 565 EKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTL----ALSNIDDTDRVKDYLGKTLASS 620

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             LL+L+ND+LD++ +++G + L    + L+D+L+++K  ++ +++   + + + + D  
Sbjct: 621 NHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYAKQLELYMDVMDVT 680

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSI 730
                 D+ RL QI   +LSNA+ F+  G TV ++        R  G + F +K+NG  +
Sbjct: 681 DEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRGCGQYEFRIKDNGIGM 740

Query: 731 PEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            ++  + +F  F     S   R Q  G GLG++I ++ +++ GG + + ++    T    
Sbjct: 741 SQEFAQKIFEPFERERTSTVSRIQ--GTGLGMAITKNIVDMMGGTIEVQTAQGKGTEFTV 798

Query: 787 RIPSK 791
            +P +
Sbjct: 799 CVPMR 803


>gi|158337935|ref|YP_001519111.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308176|gb|ABW29793.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 684

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 27/251 (10%)

Query: 550 RAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTNIIGFT 591
           +AE+ LT+ NE L K                  A++ K+ F+ ++S+ELR+PL  I+G+ 
Sbjct: 173 QAEQELTQFNEVLEKRVEERTFELQAAKLEADRANQAKSEFLANMSHELRTPLNGILGYA 232

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L  SK  +L+++    V  I  S + LL+L+ND+LDLA ++AG ++L  +T  L  LL
Sbjct: 233 QILSRSK--TLSAEDKNGVGVILDSGSHLLSLINDVLDLAKIEAGKLELFPTTTSLPSLL 290

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--- 708
             V      K  +  ++            +AD + L Q+   ++ NA+ F+  G+     
Sbjct: 291 QRVVDICQIKATQKGLQFLYKPSQLPEGILADEKLLSQVLINLIGNAIKFTDAGTVTFQI 350

Query: 709 -ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
            + K +      +F V + G  I E+    +F  F  V + H+ Q  G GLGL+I +  +
Sbjct: 351 EVHKGSDGQVSLMFKVIDTGRGIAEEDIDKLFEAFEQVGDHHK-QSEGTGLGLAISQRIV 409

Query: 766 NLHGGHVSISS 776
            L GG + I+S
Sbjct: 410 QLMGGTIHINS 420


>gi|153869151|ref|ZP_01998829.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS]
 gi|152074304|gb|EDN71172.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS]
          Length = 1630

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 168/364 (46%), Gaps = 33/364 (9%)

Query: 426  ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF--------RSLWKTEENRLSPG 477
            E +Y  +V+ Q E I         F PD  +   N A+         ++  T+ ++L P 
Sbjct: 1226 EARYRGVVEDQTELI-------CRFLPDTTLTFVNHAYCRHLGIQREAIIGTKFSKLIPE 1278

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLP 534
               +++ A   +  N+ D   ++   I + +  +   Q +   ++D    +LE   +   
Sbjct: 1279 VARKDVLAHLQQLINQKDSMIVYEHPIETANGHKGWQQWSDRAITDDAGRILEIQAVGR- 1337

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     ++T+  +AE  L E  EA   A+  K++F+ ++S+ELR+PL  I+G+  ++
Sbjct: 1338 ---------DITERKQAEEKLQEAKEAAEAANRAKSAFLANMSHELRTPLNGILGYAQIM 1388

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                    N ++   +  I  S   LL L+NDILDL+ ++AG ++L  +    N  +  +
Sbjct: 1389 GRDSHLCENYREG--IGIIERSGNYLLTLINDILDLSKIEAGKIELYPTDFYFNQFIQAI 1446

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +    +  + +I         L   V AD +RL QI   +L NA+ F+ +G  ++LK  
Sbjct: 1447 TEIFQMRAEQKSISFNYQPLSSLPLAVHADEKRLRQILINLLGNAVKFTKQGG-IVLKVG 1505

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHV 772
             +     F V++ G  I  +   ++F+ F+   +   R  G GLGLSI +  +++ GG +
Sbjct: 1506 LEKEKIRFQVEDTGIGIATEDLDNIFSPFLQVGNPNYRAEGTGLGLSITQKLVDMMGGEL 1565

Query: 773  SISS 776
             + S
Sbjct: 1566 HVES 1569


>gi|150395255|ref|YP_001325722.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150026770|gb|ABR58887.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 739

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 163/367 (44%), Gaps = 54/367 (14%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS----RYYNESDG 496
           D + + V V  PDG++  +N AF  L    + R            TC+    R+  + D 
Sbjct: 118 DAMGDLVIVRDPDGKVMQANVAFHELCGCADAR----------GLTCAELGLRFEPKPDP 167

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-AL 555
           +  F  I TS         GT       + ++  + + +A   L   ++   V  +  A 
Sbjct: 168 YRYFVHICTS--------AGT------RLYDWHDVLVRDAHGRLMRHSIARDVTEDMLAA 213

Query: 556 TEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ EA ++A+E    K+  +  VS+E+R+PL+ I+G + LL  ++   L+ +Q  Y+  
Sbjct: 214 SQREEARQRAEEASRAKSRLLATVSHEIRTPLSGILGMSRLLAETR---LSDEQKNYLVG 270

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   L+ LV D++D +++ AG  +L  S   L   +  V + ++ + HE  I I   
Sbjct: 271 MQQSGHTLVQLVEDLIDFSSLAAGRFQLRPSQQDLRQTVENVVEMLSPRAHEKGIEI--- 327

Query: 673 SDGKLGSFVA---------DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
                G+ VA         D  RL Q+   ++ NA+ F+ KG  VI+    +NG     V
Sbjct: 328 -----GATVAIEIPERMLFDAARLRQVLFNVVGNAVKFTEKGG-VIVSVDIENGSLRIRV 381

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            ++G  +  D    VF  F       QR +G GLGL+I    +   GG ++ +S     +
Sbjct: 382 DDSGPGMSADALARVFEEFEQAGDEAQRAKGTGLGLAISRRIMEAFGGSLTATSVSGKGS 441

Query: 783 TINCRIP 789
               R P
Sbjct: 442 RFEIRFP 448


>gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 847

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 16/243 (6%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +  ++T   + E  L++  E   +A + K+ F+ ++S+E+R+PL+ ++G T+L   + + 
Sbjct: 446 SHTDMTRRKQIEAELSKAKEDAERASKAKSEFLANMSHEIRTPLSGMLGMTEL---AMMN 502

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +  ++++    S   LL ++ND+LDL+ ++AG   L      L +L +   +S+A 
Sbjct: 503 ELTPEVREHLQMARDSGKSLLAIINDVLDLSKIEAGRSNLEQKKFSLRELADSTIKSLAV 562

Query: 661 KMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 +RI   +      S + D  RL QI + ++ NA+ F+ +G TV +    D  D 
Sbjct: 563 SAKAKGLRIFHAVDTEAPDSLLGDPGRLRQILTNLIGNALKFTERG-TVTVSMTADAVDA 621

Query: 720 IFS-------VKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHG 769
                     VK+ G  IPE M + +F  F   V++AH     G GLGL+I +  + + G
Sbjct: 622 PAGKITLRTVVKDTGIGIPESMLEDIFKSFNQGVTSAH-ATYGGTGLGLTISKELVEMMG 680

Query: 770 GHV 772
           G +
Sbjct: 681 GRI 683


>gi|327539948|gb|EGF26547.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 856

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 127/249 (51%), Gaps = 9/249 (3%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P    + +  +VTD    ER+L +  +A  +A+  K+ F+ ++S+E+R+P+T+I+G+ DL
Sbjct: 426 PPLYVVASGFDVTDRYEFERSLKDATDAADQANRAKSQFLANMSHEIRTPMTSILGYADL 485

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +   +   ++     +V  I  +   LL L+NDILDL+ ++A  M++   ++ L  L+ +
Sbjct: 486 ISQKQ---IDEDTRSHVATIRRNGAFLLGLINDILDLSKIEADRMEVFDESVNLIHLIED 542

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V + +  +  E ++ I+V   GK+   + AD +RL QI   ++ NA+ F+  G   +   
Sbjct: 543 VLRIMQVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAGHVRVAVR 602

Query: 713 ARD---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           A          F V + G  I ++  K +F  F        R   G GLGL I +  + +
Sbjct: 603 AEQIDLRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAM 662

Query: 768 HGGHVSISS 776
            GG ++  S
Sbjct: 663 LGGEITARS 671


>gi|297838281|ref|XP_002887022.1| hypothetical protein ARALYDRAFT_475737 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332863|gb|EFH63281.1| hypothetical protein ARALYDRAFT_475737 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 738

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 432 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 491

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            + DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 492 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 550

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 551 SKRFVNLMEGNIWIESDGLG 570


>gi|292488814|ref|YP_003531701.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora CFBP1430]
 gi|291554248|emb|CBA21540.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora CFBP1430]
          Length = 987

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    
Sbjct: 475 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 531

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +   
Sbjct: 532 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLA 591

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              +  + +    D  +   +  D  RL Q+ S +L+NA+ F+  G  ++   A   GD+
Sbjct: 592 MAVKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 649

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           + F V+++G  IP      +F+ F       QR  +G GLGL+I E  +N+  G + + S
Sbjct: 650 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVES 709

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 710 EPGMGSQFIIRIP 722


>gi|32474842|ref|NP_867836.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32445382|emb|CAD75383.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 865

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 127/249 (51%), Gaps = 9/249 (3%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P    + +  +VTD    ER+L +  +A  +A+  K+ F+ ++S+E+R+P+T+I+G+ DL
Sbjct: 435 PPLYVVASGFDVTDRYEFERSLKDATDAAEQANRAKSQFLANMSHEIRTPMTSILGYADL 494

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +   +   ++     +V  I  +   LL L+NDILDL+ ++A  M++   ++ L  L+ +
Sbjct: 495 ISQKQ---IDEDTRSHVATIRRNGAFLLGLINDILDLSKIEADHMEVFDESVNLIHLIED 551

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V   +  +  E ++ I+V   GK+   + AD +RL QI   ++ NA+ F+  G   +   
Sbjct: 552 VLSIMQVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAGHVRVAVR 611

Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           A  +       F V + G  I ++  K +F  F        R   G GLGL I +  + +
Sbjct: 612 AEQSDRRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAM 671

Query: 768 HGGHVSISS 776
            GG ++  S
Sbjct: 672 LGGEITARS 680


>gi|317475821|ref|ZP_07935078.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907981|gb|EFV29678.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 629

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 13/250 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E  L +  E   ++D +K++F+ ++S+E+R+PL  IIGF+ LL   +    +
Sbjct: 379 DITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLLPYME----D 434

Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +K+ + Y+  I+ ++ +LLN++N++LDL+ ++AG M+L      L++L++E      + +
Sbjct: 435 AKEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNV 494

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  + +K            D  R+ QI S +LSNA+  +++G   +      +G  I S
Sbjct: 495 PE-GVTLKKRYPASPCLIEQDSMRIKQILSNLLSNALKNTTQGYVEVSYETEQSGVKI-S 552

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGV 781
           V + G  IP++    +F RF       Q  G GLGLSI +S I    G + ++S   EG 
Sbjct: 553 VTDTGRGIPQEKLGVIFERFEKADSYIQ--GAGLGLSICKSIIEQMNGTIEVASVLGEGS 610

Query: 782 T---TINCRI 788
           T   T  CRI
Sbjct: 611 TFTVTFPCRI 620


>gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1494

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 31/256 (12%)

Query: 549 VRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           V++ RAL  KN+AL +A          K+ F+  +S+E+R+P+  +IG T LL   +L  
Sbjct: 705 VKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMEL-- 762

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +Q  +VE I  S   LL ++NDILD + +++G ++L      L + L E  + ++ +
Sbjct: 763 -TPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGR 821

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR----- 714
             E  + +  I D     + + D  RL Q+   ++SNA+ F+S+G  ++ +KA       
Sbjct: 822 AAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKK 881

Query: 715 -----DNGDFI-------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
                D+ DF        F V++ G  IP D    +F  F  V  +   +  G GLGL+I
Sbjct: 882 DVKKFDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAI 941

Query: 761 VESFINLHGGHVSISS 776
            +    L  G + ++S
Sbjct: 942 SQRLSQLMNGKMWVAS 957


>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1038

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 26/241 (10%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K+EA   A++ K+ F+ ++S+E+R+P+  +IG T LL  + L    ++Q  +VE I +S 
Sbjct: 280 KHEA-EAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNTPL---EAQQQDFVETIRSSG 335

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGK 676
             LL L+NDILD + ++AG + L      +   + E    +A+K  E N+ +  +I+   
Sbjct: 336 DALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKNLELAYLINPPT 395

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARD--------NG 717
             + + D  RL Q+   +L+NA+ F+ +G  V+           L A  D          
Sbjct: 396 PTAILGDITRLRQVLVNLLNNALKFTGEGEVVVYVSSKPIESKDLDAESDLEVIAEATPY 455

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           +  F VK+ G  IP D  + +F  F        R+  G GLGL+I +    L GG + +S
Sbjct: 456 EIQFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVS 515

Query: 776 S 776
           S
Sbjct: 516 S 516


>gi|325523296|gb|EGD01650.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia sp. TJI49]
          Length = 778

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 167/344 (48%), Gaps = 23/344 (6%)

Query: 456 IKLSNPAFRSLW--KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           I ++NP  R++   +  EN+L PG  I     +     +++DG  +F    T    +R  
Sbjct: 86  IIVANPIARTVMGLRITENQL-PGELIGAFEKSLQGVQSDADGSRIFQFPFTLSRPKRPP 144

Query: 514 LQGTLELLSDSVLEYSIIPLP-NAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKN 570
           L           +E +  P   N Q +     +++T   +AE  L E       A + K 
Sbjct: 145 LH----------IEITYAPAKLNKQDVFFCAVIDMTSHHQAEILLREAKLTSDAAAKAKV 194

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F   +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  LL +VND+LD 
Sbjct: 195 AFFASMSHEIRTPLSSLVGNIELVAR---GPLAPEQQARVQAMQTSARGLLQIVNDVLDF 251

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689
           + +D G + L      + +LL ++ QS A    +  +    + D  + S  + D  R+ Q
Sbjct: 252 SKIDVGELSLMEEWCSVVELLEKLAQSHAPLAVQQGLMFYTVFDRDIPSRLLFDPIRVSQ 311

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHR 748
           I + +LSNA+ F+  G  ++L+A+   G  + SV ++G  IPE++ + +F  F   +++R
Sbjct: 312 IVNNLLSNALKFTPSGK-IVLRASWGGGVLVLSVTDSGIGIPEELKQRLFVPFSQGDSNR 370

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             Q RG GLGLSI      L  G + + S+    T I   +P K
Sbjct: 371 LAQARGTGLGLSICARLCELMKGRIRLDSAVGVGTRITVELPLK 414


>gi|262384058|ref|ZP_06077194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262294956|gb|EEY82888.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 768

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 132/241 (54%), Gaps = 12/241 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +K + + +++ +K++F+ ++S+E+R+PL  I+GF++LL  +   + + +  ++ E
Sbjct: 533 EQELRDKAK-VEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT---NPSEETKEFCE 588

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++ +LL LVNDILDL+ ++AG M   YS   ++ L   + Q+  +++ +       
Sbjct: 589 IIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLYCE 648

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I +     + +++ RL Q+ +  L+NA  F+ +GS  +    R++G + F VK+ G  I 
Sbjct: 649 IPEQDCVIY-SEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKGIE 706

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TINCR 787
                 VF RF       Q  G GLGLSI ++ + NLHG     S   +G T   TI C 
Sbjct: 707 RKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHGKIGVDSEEGKGSTFWFTIPCA 764

Query: 788 I 788
           +
Sbjct: 765 V 765


>gi|172036053|ref|YP_001802554.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697507|gb|ACB50488.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1084

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 17/246 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T KN A   A+  K+ F+ H+S+ELR+PL  I+GF+ LL   +  +L+ +Q +Y++ I+ 
Sbjct: 606 TAKNTA-ESANRAKSDFLAHMSHELRTPLNAILGFSQLLNNDE--NLDEEQKEYIDIINQ 662

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   LL L+  +LD+A ++AG + L+Y  + L+ L+  +      K    NI + V    
Sbjct: 663 SGEHLLTLIKSVLDMAKIEAGEINLDYQPLNLHQLVKNLSGMFKLKAQCKNIDLTVDIGN 722

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------DFIFSVKN 725
            + S +  D  +L Q+   +L+NA+ F+ +G  VIL   +               F +++
Sbjct: 723 DVPSLIMGDEGKLRQVLINLLNNAIKFTEEGK-VILSIKKSQQQQEKSSQIIPLRFEIED 781

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F  F      GQ+   G GLGL+I   F++L GG + +S   +G T 
Sbjct: 782 TGPGIDIEEAPRLFQPFFQTK-LGQKTQEGTGLGLTISYEFVHLMGGTLQVSCPIKGGTI 840

Query: 784 INCRIP 789
               +P
Sbjct: 841 FYFTLP 846


>gi|124007456|ref|ZP_01692162.1| sensory transduction histidine kinase [Microscilla marina ATCC
           23134]
 gi|123987112|gb|EAY26861.1| sensory transduction histidine kinase [Microscilla marina ATCC
           23134]
          Length = 1248

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 128/248 (51%), Gaps = 17/248 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL +     ++A   K+ F+ ++S+E+R+PL  ++GF DLL  +   +L++ Q QY++ 
Sbjct: 728 KALQKTTLEAQQASVAKSEFLANMSHEIRTPLNGVVGFVDLLLQT---NLDATQKQYLDI 784

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S S   LL ++NDILD + ++AG M+L    + L  + + ++  +  +  +  + + + 
Sbjct: 785 VSQSGNTLLEIINDILDFSKIEAGKMELLPVKVDLAQMCDGLRDLMIYQTKQKGLEMILS 844

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNN 726
             G L  +   D  RL Q+ + +LSNA+ F+SKG+     T++ K +       F VK+ 
Sbjct: 845 LAGDLPQYAWFDEMRLKQVLTNLLSNAVKFTSKGTIEFKVTMLQKESNQKALLRFLVKDT 904

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT- 783
           G  I  +  + +F  F+       +R  G GLGLSI    + L    + + S+    +T 
Sbjct: 905 GVGILPENQQKIFEAFLQEDTSTTKRFGGTGLGLSISNRLLALMDSRLCLESTHGKGSTF 964

Query: 784 -----INC 786
                +NC
Sbjct: 965 YFDIWVNC 972


>gi|91778586|ref|YP_553794.1| signal transduction histidine kinase (STHK) with CheB and CheR
            activity [Burkholderia xenovorans LB400]
 gi|91691246|gb|ABE34444.1| signal transduction histidine kinase (STHK) with CheB and CheR
            activity [Burkholderia xenovorans LB400]
          Length = 1303

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 12/238 (5%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +TD   +   L E+ E L +AD  KN F+  + +ELR+PL  +    DLL +    S+++
Sbjct: 914  LTDRSLSNTQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSAGDLLASE---SVDA 970

Query: 605  KQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIAT 660
            +Q  + V  I      +  LVN++LDL  + +G +KLN   + L  ++    EV + I  
Sbjct: 971  RQKVWAVGVIQRQGQAMTQLVNEMLDLTRIASGSIKLNRQAVTLETVVQSALEVCRPIVE 1030

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + H + + + +  +  L     D  RL Q+   I+ NA  ++  G  + L A R      
Sbjct: 1031 ERH-HTLSVALPEEPVL--MFVDPTRLSQVIENIVINAAKYTEPGGKIDLSATRTGRRLS 1087

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              V++NG+ I   M  ++F+ FV     H     G+G+GLS+V   + LHGG V   S
Sbjct: 1088 LRVRDNGAGIAPSMLNTLFDMFVQGPLPHGQLHNGLGVGLSVVRRLVELHGGTVEAVS 1145


>gi|37679341|ref|NP_933950.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198084|dbj|BAC93921.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 718

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 7/239 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++    R +++L+E  +    A+  K+ F+ ++S+ELR+PL  ++G+T L+K  +   L
Sbjct: 240 VDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQ--RL 297

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +K  +Y+E I+ S   LL+L+ND+LD++ +DAG   +        ++  E+   +  K 
Sbjct: 298 TAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKA 357

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGD- 718
            +  + +    +  +  FV  D  +  Q+   +L NA+ F+ +G+    I   A  NG  
Sbjct: 358 MQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQH 417

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              F V ++G  I E+  + VF  F        + G GLGLSI + F+ L GG + + S
Sbjct: 418 KVTFEVSDSGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKS 476


>gi|225574442|ref|ZP_03783052.1| hypothetical protein RUMHYD_02511 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038327|gb|EEG48573.1| hypothetical protein RUMHYD_02511 [Blautia hydrogenotrophica DSM
           10507]
          Length = 347

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 15/238 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +A + A++ KN  + ++++++R+PLT +IG+  LL+ +    +  + ++Y       + 
Sbjct: 115 KQAAKMAEDKKNDLIMYLAHDIRTPLTTVIGYLSLLEEAPDMPVEQR-TKYTGIALEKAE 173

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISD 674
            L  L+N++ ++  + A  + L    +    +L  L +E    I+ K   N++R+++   
Sbjct: 174 RLERLINELFEITRLHARTVALKKEKLDLYCLLVQLADEFYPIISAK--GNSLRLEI--K 229

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
            K+  F AD ++L+++FS IL NA+ +S    T IL  A   GDF+   ++N G  IP++
Sbjct: 230 EKMTVF-ADAEKLVRVFSNILKNAVSYSYP-DTEILITADVQGDFVNVDIQNQGDQIPQE 287

Query: 734 MCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F +F+    A      G GLGLSI E  I LHGG +++  S+E + T + R+P
Sbjct: 288 RLGDIFEKFIRLDKARLSDTGGTGLGLSIAEEIIRLHGGEITV-ESEEKMVTFHVRLP 344


>gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
          Length = 1331

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 580 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 637 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 697 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 756

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG +++
Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816

Query: 775 SSSDEG 780
             S+EG
Sbjct: 817 -HSEEG 821


>gi|119490633|ref|ZP_01623038.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
 gi|119453798|gb|EAW34955.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
          Length = 1016

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 139/281 (49%), Gaps = 20/281 (7%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           SF+  ++++QG         L +  I L  A  +   + +T    ++ AL +  +    A
Sbjct: 478 SFEVWKQTIQGC-------SLPWKKIELDAALELRNILMLTALQSSQLALEQVAQRAEIA 530

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+ ++S+E+R+P+  I+GF DLL+         +Q  Y+E I+AS   LL+L+N
Sbjct: 531 NQAKSEFLANMSHEIRTPMNAILGFCDLLQGL---VTEPRQRSYLELIAASGESLLDLIN 587

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADR 684
           DILDL+ ++AG  +L Y  + L  L+ EV++    +  E  +  I  I D        D 
Sbjct: 588 DILDLSKIEAGKFQLYYEPLNLRQLIAEVQKIFTHRAKEKGLSLISHIDDAVPQGIYFDG 647

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI------FSVKNNGSSIPEDMCKS 737
            RL QI   +L NA+ F+ +G   I ++A     + I       ++ + G  I ++    
Sbjct: 648 IRLRQILFNVLGNAIKFTERGFIQISIRAQVYTQENIKKVWLEIAITDTGIGIAKNQQDD 707

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  FV +  +  R+  G GLGL+I      L GG + + S
Sbjct: 708 IFEAFVQSEGQSTRKYGGTGLGLAITRRLTTLLGGTLVLQS 748


>gi|159898358|ref|YP_001544605.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891397|gb|ABX04477.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 569

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 10/244 (4%)

Query: 554 ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           ++ E   A R A++    K+ F+  +S+ELR+PL  II  T+ +     G LNS+Q  Y 
Sbjct: 191 SVQEAKSAQRLAEQANLRKSQFLATMSHELRTPLNAIINMTEFIDW--FGPLNSQQKSYQ 248

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  +   LL+L+NDILDL+ ++AG ++L +  +   D+  EV +++        ++I 
Sbjct: 249 DQVRGAGEHLLHLINDILDLSKIEAGRIELQFGQVDCGDIAQEVLETVRPLAESKGLQIA 308

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSS 729
                  G   AD + + QI   +LSNA+ F+  G   V L+ +    +   SV + G  
Sbjct: 309 YHHADGTGLAWADSKAIKQIVLNLLSNAIKFTETGQIRVALEFSATTVN--ISVHDTGIG 366

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + ++  F  + +A   +  G GLG+SI +  ++LHGG++++ S     T     
Sbjct: 367 IAREQQQFIWESFRQIQSADDREYEGTGLGMSITKQLVDLHGGNITVESELGQGTQFQVC 426

Query: 788 IPSK 791
           +P+K
Sbjct: 427 LPTK 430


>gi|259907954|ref|YP_002648310.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia pyrifoliae Ep1/96]
 gi|224963576|emb|CAX55066.1| Sensor kinase protein RcsC [Erwinia pyrifoliae Ep1/96]
 gi|283477834|emb|CAY73750.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia pyrifoliae DSM 12163]
          Length = 992

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    
Sbjct: 484 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 540

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +   
Sbjct: 541 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLA 600

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    D  +  +   D  RL Q+ S +L+NA+ F+  G  ++   A   GD+
Sbjct: 601 MVVKKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 658

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           + F V+++G  IP      +F+ F       QR  +G GLGL+I E  +N+  G + + S
Sbjct: 659 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVES 718

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 719 EPGMGSQFIVRIP 731


>gi|170077056|ref|YP_001733694.1| Signal transduction histidine kinase [Synechococcus sp. PCC 7002]
 gi|169884725|gb|ACA98438.1| Signal transduction histidine kinase [Synechococcus sp. PCC 7002]
          Length = 553

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 21/246 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L + ++A  +A  +KN F+ + ++ELR+PL  IIGF  L+    L  +   +++ +++
Sbjct: 284 QELEQLHQAATEAARLKNDFLANTTHELRTPLNGIIGFLTLV----LDEMADGRAEELDF 339

Query: 613 ISA---SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           I+A   S+  LLNL+NDILD+A +++G + L+   I L +LL+ +      ++   N+  
Sbjct: 340 IAAAHESALHLLNLINDILDIAKIESGKLDLDLQPISLGELLDNLNNFARPQLQTKNLTW 399

Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDNGDFI- 720
           +++        +   D QRL Q+   ++ NA+ F++ G        V      D+  F  
Sbjct: 400 EILVPESHDDIILYGDYQRLFQVLLNLVGNAIKFTNAGGITINVELVFKPVIHDDQQFPG 459

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               SV + G  +  DM   +F  F  V   H  +  G GLGL+I +  +   GG +S  
Sbjct: 460 MVKISVIDTGIGVALDMQSKLFQNFSQVRGGHTRKYGGTGLGLAISKKLVEACGGKISFY 519

Query: 776 SSDEGV 781
           S  EG+
Sbjct: 520 SMGEGL 525


>gi|119490557|ref|ZP_01622999.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453885|gb|EAW35041.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1056

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 151/275 (54%), Gaps = 28/275 (10%)

Query: 524 SVLEYSIIPLPNAQTMLTFVN-VTDSVRAERALTEKN---EALRK----ADEIKNSFVQH 575
           ++L   +I + + Q +L+  N +T+  + E  L  +N   E  RK    A++ K++F+ +
Sbjct: 542 ALLSADLIEINSEQYLLSSSNDITERKQVENQLQTQNIELEIARKNADAANQAKSTFLAN 601

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+PL  I+GF+ L+  + +    SK+   +E I+ S   LL+L+NDILDL+ ++ 
Sbjct: 602 MSHELRTPLNAILGFSQLMAQNPIFVSASKE---LEIINRSGEHLLSLINDILDLSKIEV 658

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFV-ADRQRLLQIFSK 693
           G + L         LL+ +++ +  KM  N   I++IS+  ++  ++  D  +L Q+   
Sbjct: 659 GKVVLEEKPFDFYILLDTLEEML--KMRANAKGIQLISERDQIPQYIKTDENKLRQVLIN 716

Query: 694 ILSNAMDFSSKGSTVILKAARDNGD-----------FIFSVKNNGSSIPEDMCKSVFNRF 742
           ++ NA+ F+++GS + L+    + D             F V++ G+ I  +    +F+ F
Sbjct: 717 LIGNAIKFTNQGS-ITLRVDSHSPDVNSLTPNSPVQLFFEVEDTGAGISTEEIDQLFDAF 775

Query: 743 V-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V ++A +  ++G GLGLSI   F+ L GG +S+ S
Sbjct: 776 VQTSAGKQSQQGTGLGLSISRKFVQLMGGKISVKS 810


>gi|114569187|ref|YP_755867.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339649|gb|ABI64929.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 535

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +   +A   K+ F+  +S+E+R+P+  ++G + LL T+    L   Q + V  I 
Sbjct: 283 LVEARQQATEASRAKSRFLATMSHEVRTPMNGVLGMSALLATT---DLEPSQREMVNLIE 339

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S   LL ++NDILDLA +++G  ++   T    +L+  V      K  E  + + + I 
Sbjct: 340 GSGQALLTILNDILDLANIESGRFEVEQDTFNPAELVRTVAGPYRMKAMEKGLNLHLEID 399

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSS 729
                  V D  R+ QI S +LSNA+ FS +G      ++ + A    D  F V + G  
Sbjct: 400 PVAEREVVGDPARVRQILSNLLSNAVKFSDRGEVRVRCLMTQTADRAHDVTFEVGDTGIG 459

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  D+   +F  F       QR+  G GLGL+I +    L GG +++ S+    +    +
Sbjct: 460 MDGDLMSRIFMPFSQGEAVMQRKNGGTGLGLAIAKKLAELMGGDITVESAPGAGSKFTVK 519

Query: 788 IPS 790
           +P+
Sbjct: 520 LPA 522


>gi|84622292|ref|YP_449664.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366232|dbj|BAE67390.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 631

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 14/239 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISA 615
           +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +    + Y  +  I++
Sbjct: 242 RNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGHTTYKGLSVIAS 296

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVIS 673
           S+     L++D+LDL+++  G ++L   ++ L + + E    Q +A +  +  +++ V  
Sbjct: 297 SARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILKLHVPP 356

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L   + D  RL Q+   +LSNA+ F+     + +   RD+G  + SV ++G  I  +
Sbjct: 357 TPCL--VLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAE 414

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
               +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T   R+P
Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473


>gi|229084116|ref|ZP_04216405.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44]
 gi|228699152|gb|EEL51848.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44]
          Length = 453

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 125/242 (51%), Gaps = 24/242 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR +++++  FV +VS+E +SPL++I GF+  L+T+ L    S+Q+ Y+E I + S  + 
Sbjct: 217 LRNSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNNLTK--SEQTHYLEIIESESRRMS 274

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---------KQSIATKMHENNIRIKVI 672
           +L   +L LA++D   + L   +  L   + ++         K+ +A +M   NI+I   
Sbjct: 275 SLCKQLLLLASLDKEDLTLRKRSFDLGKQIKDIIFMLEWEWRKKELAVEMDVPNIQI--- 331

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                     D   L Q++  + +N++ F+  G T+  +A     ++  S+ + G  IPE
Sbjct: 332 --------YGDENLLYQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPE 383

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  K +F+RF  V  A      G GLGLSIV+  I+LH G +++ S     TT +  +  
Sbjct: 384 NEIKKIFDRFHKVDTARNRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTTFSIYLQK 443

Query: 791 KE 792
           ++
Sbjct: 444 QQ 445


>gi|254415959|ref|ZP_05029715.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177134|gb|EDX72142.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 569

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 120/255 (47%), Gaps = 22/255 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    E   +   +K+ F+   S+ELR+PL  +IGF  L+    +     +Q ++++ 
Sbjct: 307 KELELAREQAEEVSRLKSEFLASTSHELRTPLNGMIGFLKLI-LEGMADDPEEQREFIQE 365

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN----IR 668
              S+  LLN++NDILD+A ++AG M+L +S + L  L N+V    A + H  N    + 
Sbjct: 366 AHNSALHLLNIINDILDIAKIEAGKMELEFSPVELEYLFNKVYDFTAQQAHHKNLSFTLE 425

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGD 718
           I  + DG +     + QRLLQ+   ++ NA+ F+ +G   I           +     G 
Sbjct: 426 IPAVYDGIV--MYGNYQRLLQVMLNLVGNAIKFTDEGGITISAEVIRKKVHFQGQEFPGH 483

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSIS 775
               V + G  +  D    +F  F S  H G  R   G GLGL+I +  +   GG V   
Sbjct: 484 VKVRVADTGIGVSLDKQDKLFQSF-SQVHGGLNRPYGGTGLGLAISQKLVETMGGVVHFF 542

Query: 776 SSDEGV-TTINCRIP 789
           S  E + +T+   +P
Sbjct: 543 SMGENLGSTVTFTVP 557


>gi|120603308|ref|YP_967708.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563537|gb|ABM29281.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 559

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 149/290 (51%), Gaps = 32/290 (11%)

Query: 513 SLQGTLELLSDSVLEY---SIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRK 564
            +Q ++EL +  +  +   ++ P+ NA   +  V     +VT + R ER L    EA   
Sbjct: 103 GVQKSIELYNPEIRAFRSITVFPVHNAAGEVVMVAEYVRDVTATRRMERELRVAKEAAEA 162

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD+ K+ F+  +S+E+R+P+  ++G  DL   ++   L+ +Q  Y+E    S+  LL L+
Sbjct: 163 ADKAKSEFLASMSHEIRTPMNGVLGMLDLALDTR---LDDEQRDYLEAAQNSAESLLALI 219

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RI-KVISDGKLGS 679
           NDILD + ++AG+++L+     L   L+ +      +  E  +    RI + + DG    
Sbjct: 220 NDILDFSKIEAGMVELDSQAFRLRKRLSTLHTMFVHRAEEKGLAFGFRIGEEVPDG---- 275

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD----NGDFI---FSVKNNGSS 729
            V D  RL Q+   +L NA+ F+ +G     V L AA+      G+ I   FSV ++G  
Sbjct: 276 LVGDPMRLRQVLVNLLDNAIKFTEQGRVYLDVQLDAAQGALPAEGEPILLRFSVTDSGPG 335

Query: 730 IPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
           I E   + +F RFV ++    +R RG GLGL+I +    L GG +++ S+
Sbjct: 336 ILESHREHIFERFVQADGSLSRRHRGTGLGLAICKRLATLMGGDITVESA 385


>gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 467

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 166/363 (45%), Gaps = 44/363 (12%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +  +S+GV      GR+ L NP    L++              I    SR  N       
Sbjct: 125 LSSMSDGVIAMDAWGRMILINPVVEELFR--------------ITMAASRGKN------- 163

Query: 500 FAAIITSFDDER---------KSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDS 548
              +I ++D E+         + +Q  +++L+    V +  +IPL N+      V     
Sbjct: 164 ILRVIRNYDLEKLLNQALETGRCMQKQIQILAPEPRVFQVHVIPLQNSGAERGGV----- 218

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V   R +TE+    +   E+++ FV +VS+ELR+PLT+I GF + L    L   ++ + +
Sbjct: 219 VALLRDITER----KILQEMRSEFVANVSHELRTPLTSIRGFAETLLDGALEEPDTAR-R 273

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++E I++ +  L  L++++L+L+ +++         + + +L+      +  +  E N+ 
Sbjct: 274 FLEIINSETERLSRLIDELLNLSRLESHKWVPKRQPVNMGELIKRAVAILQPRAVEKNLA 333

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           IK+     L     D   L Q+   ++ NA+ ++  G  V + AA    +    VK+NG 
Sbjct: 334 IKINLPEDLPVVQGDPDMLSQVLLNLIENAVVYTQAGGEVSISAAATQDEMKVDVKDNGI 393

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +    VF RF  V  A   ++ G GLGLSIV+  I+ H G V + S     +T + 
Sbjct: 394 GIPPESLSRVFERFYRVDKARSREQGGTGLGLSIVKHIIDAHRGSVQVESKVGIGSTFSF 453

Query: 787 RIP 789
            IP
Sbjct: 454 VIP 456


>gi|320104503|ref|YP_004180094.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751785|gb|ADV63545.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 867

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 130/262 (49%), Gaps = 17/262 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++TD  RA+  L +      +A++ K +F+ H  +E+R+PLT I+GFT++L   +LG  
Sbjct: 282 IDLTDLRRAQAELEQARRTAEQANQAKTAFLAHFGHEIRTPLTAILGFTEVLH-ERLGH- 339

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + + ++ +E I ++ + L  L+ND LDL+ +++G ++L  ++I   +L  EV      + 
Sbjct: 340 DPQSAEALEAIQSAGSHLKMLLNDFLDLSKIESGKLELAPTSIDPWELAVEVATINQGQA 399

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD-- 718
               IR+ V ++      V  D  RL Q+   ++ NA+ FS  G  T+ L  +  N    
Sbjct: 400 QAKGIRLGVEANASTPLLVHVDTTRLRQVLFNLVGNAIKFSQGGDVTISLIGSEPNASDS 459

Query: 719 -------FIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINL 767
                   ++ V++ G  +  D    +F  F     +N       G GLGL I +S + L
Sbjct: 460 DTDGRSTLVWQVRDQGPGMTADQVARLFEPFHQVGTANPRDTLSSGSGLGLVISKSLVEL 519

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG + + S     TT+   +P
Sbjct: 520 MGGTIQVVSHPGRGTTVQFELP 541


>gi|169335858|ref|ZP_02863051.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258596|gb|EDS72562.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM
           17244]
          Length = 968

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 137/242 (56%), Gaps = 16/242 (6%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LKTSKLGSLN 603
           ++ +R+E+ L +   A R A+E K+ F+  +S+++R+PL  IIG + +  LK  K  S+ 
Sbjct: 435 SERIRSEQLLKDALNAARTANEAKSDFLSRMSHDIRTPLNAIIGMSTIGKLKIEKPNSVL 494

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              S+    I +SS  LL+L+NDILD++ +++G + LN      +++++E+ + I  +  
Sbjct: 495 DCFSK----IDSSSKYLLSLINDILDMSKIESGKVTLNDERFDFSEMIHEINEIIYDQAV 550

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDF 719
           E  I  KV SD  +   ++ADR +L QIF  +LSN++ + SKG  +     +  R+ G  
Sbjct: 551 EKGIEYKVYSDINMDKYYIADRLKLNQIFMNLLSNSLKYFSKGDFIHFSFKEVKRERGVS 610

Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774
           +  F V+++G  + +     +F  F    + G  R   G GLGL+IV++ +++  G++ +
Sbjct: 611 LIEFIVEDSGCGMSKGFLDKLFLPF-EQENAGVARNNVGTGLGLTIVKNIVDIMEGNIEV 669

Query: 775 SS 776
            S
Sbjct: 670 IS 671


>gi|120603378|ref|YP_967778.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563607|gb|ABM29351.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 831

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 9/229 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           ++ +      A+ +K++F+ ++S+++R+PLT IIG  DLL+    G    ++S Y+  + 
Sbjct: 236 ISSRQAMAEAANRMKSAFLANMSHDMRTPLTGIIGMADLLEAP--GCPPERRSAYIAQLK 293

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +S  LL +VNDI D + +++G ++L      L + ++E          +  + +   I 
Sbjct: 294 GASANLLEIVNDITDYSCLESGRLRLTPRPFALRNAVDECLGLFRFTCEQKGLTLTADIP 353

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI--FSVKNNGSS 729
            G   +   D  RL Q    ++SNA+ F+ +G  + VI +  R   D +  F+V++ G  
Sbjct: 354 PGLPDALTGDDFRLRQALGNLVSNAVKFTRRGTITVVIREEERSTEDVMLRFTVQDTGVG 413

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP     ++F  FV    AH  +  G GLGL+I      + GG   + S
Sbjct: 414 IPRHEQDAIFESFVQGGAAHELRMGGTGLGLAITRDIAAMCGGTAGVHS 462


>gi|284054567|ref|ZP_06384777.1| two-component hybrid sensor and regulator histidine kinase
           [Arthrospira platensis str. Paraca]
          Length = 812

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 127/251 (50%), Gaps = 19/251 (7%)

Query: 546 TDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           T  +R E+   E  +A   A+   + K+ F+ H+S+ELR+PL  I+GFT L+        
Sbjct: 418 TLEIRVEQRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQISLEN 477

Query: 603 NSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           N   + + ++   I  S   LL L+ND+LD++ ++AG + LN +   L  LL+ +++  +
Sbjct: 478 NHNLNNFRDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLEEMFS 537

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +     +++  +    L  ++ +D Q+L Q+   ++ NA+ F+  GS  +     D  +
Sbjct: 538 IRAASEGLKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFTENGSVTLHSQVIDPPN 597

Query: 719 FI-----------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766
            I           F+V++ G  I       +F  F+ +   R  ++G GLGL I + F+ 
Sbjct: 598 QIDNPQPPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQQGTGLGLPISQQFVQ 657

Query: 767 LHGGHVSISSS 777
           L GG +S+SS+
Sbjct: 658 LMGGDISVSST 668


>gi|237746376|ref|ZP_04576856.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377727|gb|EEO27818.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 907

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 126/252 (50%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R  RAL E   A R A E K +F+  +S+++R+P+  I+G   L+  + L S   + 
Sbjct: 375 EQARQRRALEEAYHAARVASEAKTNFLSSMSHDIRTPMNAIMGMA-LIAQTNLAS-PERV 432

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +  ++ IS SS  LL+L+N+ILD++ +++G + L    + L +L+  V       + E  
Sbjct: 433 ADCLDKISVSSRHLLSLINEILDMSKIESGRIDLVAEEVSLPELIRNVMGMCQPLLREKG 492

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARDNGDF 719
           +   V  S  +  + V D  RL Q+   +LSNA+ ++ +G TV      +    +  G +
Sbjct: 493 LEFHVSASQVRHENIVIDGGRLQQVLMNLLSNAVKYTPEGGTVGFVVRELPTGIKKRGQY 552

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F V++NG  +P      +F  F    +    + +G GLG++I E+ + +  G +++ S 
Sbjct: 553 EFVVEDNGIGMPAAFLPHLFEPFSRAEDPRISRIQGTGLGMAIAENIVRMMNGTITVESE 612

Query: 778 DEGVTTINCRIP 789
            E  +     +P
Sbjct: 613 PEKGSRFTVSLP 624


>gi|217970259|ref|YP_002355493.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507586|gb|ACK54597.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 878

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 7/251 (2%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIG 589
           P   T    +N+    + ++  TE+ +  R    KA++ K  F+  +S+ELR+PL  I+G
Sbjct: 468 PFTSTCALLINLYRLFKEQQRFTEELQQARDQAEKANQAKTEFLSSMSHELRTPLNAILG 527

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  LL+  +   L+ +Q + VE I+ S   LL L+N++LDLA +++G ++++   ++ +D
Sbjct: 528 FAQLLQNGRQ-PLSERQLRQVEQIARSGRHLLQLINEVLDLARIESGRLQVSLEPMLAHD 586

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           ++ +  Q +     +  I + +         F  D  R+ QI   +L NA+ ++  G  V
Sbjct: 587 VIEDAAQIVLPLAEQQGIALALPPAQACALRFTGDYTRVKQILINLLGNAIKYNRPGGAV 646

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINL 767
            ++     G     V + G  IP      +F  F    A  G   G G+GL++    ++L
Sbjct: 647 EVRCEAVGGRCRIGVVDTGIGIPASRLGELFQPFNRLGAESGSIEGTGVGLALTRKLVDL 706

Query: 768 HGGHVSISSSD 778
             G + + S +
Sbjct: 707 MHGELGVHSRE 717


>gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
 gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
          Length = 1126

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 5/235 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           KN  L  AD++K+ F+   S+ELR+PL  ++G  + L T   G +++     +E I  S 
Sbjct: 442 KNNELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPISASHRHQLEIIINSG 501

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L +LVND+LD   +  G + +N     L+   + V +     +   +IRI    D  L
Sbjct: 502 QRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLGNKSIRIINQVDKSL 561

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
                D QRL Q+   ++ NA+ ++S+G  VI  +  D   F+   V + G  IP D  +
Sbjct: 562 PVVFVDEQRLEQVLYNLIGNAIKYTSEGKIVISASVVDQ--FLRVQVVDTGHGIPADELE 619

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F   +   H     R+G GLGLSI    I L GG + +SS      T +  +P
Sbjct: 620 HIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLP 674


>gi|182678998|ref|YP_001833144.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634881|gb|ACB95655.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 797

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 9/244 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ L +K EA   A+  K+ F+ ++S+ELR+PL  IIGF++L+     G L S   +Y+
Sbjct: 517 AEKYLEQKAEA-ETANRAKSEFLTNMSHELRTPLNAIIGFSELMGQEPYGPLGS--PRYL 573

Query: 611 EY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL +++D+LD++ ++AG ++L  +   ++ ++++    +     E  I
Sbjct: 574 DYCNDIRQSGQYLLGVISDVLDMSRLEAGRVRLEKTDFEIDTVVSKAIAGVKATAEEKEI 633

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +   +  +  S  ADR  + +I   +L NA+ F+     V ++     G     V++ G
Sbjct: 634 TLLAETTPQT-SVHADRGAIEKILLILLRNAIKFTPAQGRVTVRTRMIQGALNIYVEDTG 692

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +   F  +  +     +G GLGL+I  S ++LHGG + I S+    T + 
Sbjct: 693 MGIPPAPLARLGRPFEQLHGSMANGMKGSGLGLAIARSLVDLHGGSMRIRSTVGSGTIVL 752

Query: 786 CRIP 789
            RIP
Sbjct: 753 VRIP 756


>gi|78221238|ref|YP_382985.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78192493|gb|ABB30260.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 508

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 36/280 (12%)

Query: 529 SIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           S  PL NA   M+  V +   + A +AL ++ E           FV  +S++L++P+T I
Sbjct: 229 SAAPLANAAGEMIGSVEIIRDISALKALEQERE----------DFVSMLSHDLKTPITAI 278

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG  DL+K  +LG +N +QS Y++    S   ++++++ +LD+   +AG M        L
Sbjct: 279 IGSIDLVKEGRLGPVNPEQSMYLDAAVESCAEMVDMIDTLLDVHRFEAGRMVTTLVEEEL 338

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             LL             + + + +   G   +F+ DR++  ++   +LSNA+ F+++G  
Sbjct: 339 GPLLQRTVGRFEPVARHSGLELTLSLPGAPVTFLVDRKQFGRLLGNLLSNALKFTTEGGI 398

Query: 708 VIL----------------------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            +                       +  R+    + SV + G+ IP D   ++F+RFV  
Sbjct: 399 EVRAELPENAAAAAQGITPGAYPTERLPREGRYLLVSVSDTGAGIPADSLVTIFDRFVQA 458

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
            +R  G+  G GLGL+     ++ H G + + S  D G T
Sbjct: 459 RNRKMGKSSGTGLGLAFCRKVMDAHHGFIWAESEPDRGST 498


>gi|330966578|gb|EGH66838.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 917

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 1042

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 127/255 (49%), Gaps = 7/255 (2%)

Query: 526 LEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +E S+ P+     ++T    ++T S R +  L E  EA  KA   K+ F+  +S+ELR+P
Sbjct: 548 VEISVTPILGGPKLVTATVRDITASKRTQEELHEAKEAAEKASRAKSEFLASMSHELRTP 607

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +++G+  LL+  +   L+ +Q + +  I  S   L  L+ +ILD+A ++AG + +   
Sbjct: 608 LNSVLGYAQLLRCEE--ELSQRQRKALNVIQQSGEHLQRLIEEILDMAKIEAGTLDIVAE 665

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
            + L+ +L+ + +   ++     +         + + V AD +RL Q+   +L NA+ ++
Sbjct: 666 NVDLHRMLDGIVEITRSRAQSKGLAFTFAPGADVPAVVSADERRLCQVLMNLLDNAIKYT 725

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIV 761
             G  V+L+         F V++ G  I  +    +F+ F           G GLGL+I 
Sbjct: 726 RHGE-VVLRTMMHERAVCFVVEDTGLGIRPEHLSEIFDVFHQVRDPSMTVEGTGLGLAIS 784

Query: 762 ESFINLHGGHVSISS 776
           +  ++L GG + ++S
Sbjct: 785 KRLVHLMGGELQVAS 799


>gi|83648936|ref|YP_437371.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83636979|gb|ABC32946.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 890

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 133/250 (53%), Gaps = 16/250 (6%)

Query: 542 FVNVTDSVRA----ERALTEKNEAL--RKADEI----KNSFVQHVSYELRSPLTNIIGFT 591
            V V  +VR     E+A   K +AL  ++A E+    K+ F+ ++S+E+R+P+T I+G++
Sbjct: 343 LVQVGTAVRNAQLFEQARQAKEQALNAQRAAEVSEAAKSRFLANMSHEIRTPMTAILGYS 402

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           + L+ S L     +++Q+++ I  S   LL ++NDILDL+ ++A  +++ +  I L +L+
Sbjct: 403 ESLRESNLS--REERNQFIDIIVRSGRHLLTIINDILDLSKIEAEKIEIEHMQISLPNLI 460

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI- 709
            +++  I  + HE  + + +     L + F +D  RL QI   + +NA  F+ KGS    
Sbjct: 461 EDLRSHIGMRAHEKGLTLDITPKLPLPAHFESDPTRLKQILFNLGANATKFTHKGSIHFG 520

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           +   +D     F+V + G  +     K +F  FV       R+  G GLGL I     ++
Sbjct: 521 VSYEKDTNLLRFTVTDTGIGLGPGELKKIFEPFVQADSSTTRQYGGTGLGLYISRQLAHM 580

Query: 768 HGGHVSISSS 777
            GG +++ SS
Sbjct: 581 LGGELTVDSS 590


>gi|2439990|gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudomonas tolaasii]
          Length = 706

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L+ +   Y+  I  S+
Sbjct: 71  RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRHVDYLGTIEKSA 126

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 127 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 186

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSI 730
            L + V D  RL QI + ++SNA+ F+ +G T++ +A       D+     SV++ G  +
Sbjct: 187 PL-AVVGDPLRLKQILTNLISNAIKFTREG-TIVARAMVEDEEEDSVQLRISVQDTGIGL 244

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 245 SNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 293


>gi|330877094|gb|EGH11243.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 917

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|326386781|ref|ZP_08208402.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208834|gb|EGD59630.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 1135

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 8/239 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    EA   A+  K+ ++  VS+E+RSPL +I G+  L++       +   ++    
Sbjct: 671 RELHRAKEAAESANAAKSRYLLAVSHEIRSPLNSIYGYAQLMERGH----DIAPAEAARI 726

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  SS  L NLV  +LD++ V++G+++++  T+ L   L+++      +     I     
Sbjct: 727 IRRSSEHLTNLVEGLLDISHVESGVLRISNDTVRLQPFLDQIASMFVPQAQAKGIAFDYR 786

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             G + ++V  D++RL QI   +LSNA+ F+  GS     A R      F++ + G  I 
Sbjct: 787 CTGHIPTYVRTDQKRLRQILINLLSNAIKFTQAGSVRFTVAFRPE-LATFTIADTGIGIA 845

Query: 732 EDMCKSVFNRFVSNAH-RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  + +F  F   +H   QR RG+GLGL+I  + +++ GG + + S      T   R+
Sbjct: 846 AEDRERIFAPFERGSHPEAQRQRGIGLGLAITAALVHILGGDIQVESVPGKGATFTVRL 904


>gi|319654313|ref|ZP_08008401.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
 gi|317394013|gb|EFV74763.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
          Length = 931

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 120/255 (47%), Gaps = 16/255 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L EK + L  + + K+ F+ ++S+ELR+PL +I+  +++L       L  +Q ++ 
Sbjct: 502 AKEELEEKAKQLSLSSKYKSEFLANMSHELRTPLNSILLLSEMLAEDPDQMLTEEQKEFS 561

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S   LL L+NDILDL+ V+ G +++++  + + ++   + Q         N+   
Sbjct: 562 KVIHTSGQDLLTLINDILDLSKVEVGKLEISFEEVNMGEMSQRMNQHFTQVAKHKNLEFT 621

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------- 720
           V S  ++   F  D QRL QI   +LSNA  F+ +GS  +        DF          
Sbjct: 622 VSSSEEVPPVFHTDEQRLQQIVKNLLSNAFKFTEEGSVAVTFEKAAQSDFFGLPLSAYTD 681

Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                +V + G  IP +  + +F  F        R+  G GLGLSI + F  L GG   +
Sbjct: 682 DWLKITVLDTGIGIPAEKQQLIFEAFQQADGATMRKYGGTGLGLSISKEFAQLLGGICKV 741

Query: 775 SSSDEGVTTINCRIP 789
            S +   +     IP
Sbjct: 742 ESEEGKGSRFTLVIP 756


>gi|260462410|ref|ZP_05810618.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259031904|gb|EEW33172.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 602

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 3/224 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K  F+  VS+ELR+PL  IIGF+D+L     G+  + +Q +YV  +  S   LL +V  I
Sbjct: 345 KGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSI 404

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ +++G            + +   +  +  +    NI ++       G   ADR+ +
Sbjct: 405 LDVSRIESGAYATEPEPFRFMEAVEMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAV 464

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   ++SNA+ F+  G  V++ A R      F V++ G  I E+   ++   F+   +
Sbjct: 465 QQILINLVSNAVKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGIAEEDFANLGKPFMQIQN 524

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              RR  G GLGLS+V+  + LH G +SI S     TT+   +P
Sbjct: 525 DYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 568


>gi|254521023|ref|ZP_05133078.1| response regulator receiver domain protein [Stenotrophomonas sp.
           SKA14]
 gi|219718614|gb|EED37139.1| response regulator receiver domain protein [Stenotrophomonas sp.
           SKA14]
          Length = 1019

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 9/231 (3%)

Query: 555 LTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           L  + + +R ++E+      K+ F+ ++S+ELR+PL + +    LL  +K G+L  +Q +
Sbjct: 327 LVAQGQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTDEQVK 386

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I +S+  LL L+NDILDL+ ++AG ++L    +V++ ++  ++++      +  + 
Sbjct: 387 YARAILSSNNDLLALINDILDLSRIEAGHVELADEVVVVDSVVQRLRETFEPMARQKGLA 446

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +D    S  VAD QRL QI   +L+NA+ F+  G   +   A  +G   F V + G
Sbjct: 447 LQIEADALAPSQLVADSQRLQQILKNLLANALKFTEHGKVSLHVRAAGSGRIRFEVADTG 506

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I  +  + +F  F       +RR  G GLGLSI        GG + + S
Sbjct: 507 IGIAREQLQVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIHVDS 557


>gi|115372093|ref|ZP_01459404.1| TodK [Stigmatella aurantiaca DW4/3-1]
 gi|115370795|gb|EAU69719.1| TodK [Stigmatella aurantiaca DW4/3-1]
          Length = 668

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 9/235 (3%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + E  R+  E +   V  V ++LR+PL+ I     LL   KLG  +  +  +V  IS ++
Sbjct: 427 QEEEARQMAEFQEKLVAIVGHDLRNPLSAIQVSAALL-ARKLGEPSLLRKLHV--ISTAA 483

Query: 618 TILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               ++  D+LDL      G + +      L+ ++ EV +       E +IR+ +    +
Sbjct: 484 DRAGHITRDLLDLTQARLGGGIPVRPQPCELHAVIREVAEEHHAAHPERDIRLDLAGTAE 543

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
               V D +RL Q+ + +LSNA+++S  G+ V + + R   + +    N G  IPE+M  
Sbjct: 544 ---GVWDPERLAQVVANLLSNALNYSPPGTPVEISSQRHEEELVLRFHNQGPPIPEEMRS 600

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  F     R  G R G+GLGL I E  ++ HGGH+ + S++   TT    +P
Sbjct: 601 RLFAPFKRRPERSAGPRDGLGLGLYIAERIVSAHGGHIGVDSTELQGTTFFVHLP 655


>gi|312887983|ref|ZP_07747567.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311299464|gb|EFQ76549.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 733

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 120/222 (54%), Gaps = 10/222 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +A +IK +F+ ++S+E+R+PL +I+GFT+LL+       +   ++++E I  +   L+
Sbjct: 232 LTEALQIKENFLANMSHEIRTPLNSILGFTNLLQRR---DKDPDSAEFIESIQKAGENLM 288

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++NDILDL+ ++AG+M++  +   +  L++ ++     +++E  +++   ++     + 
Sbjct: 289 AIINDILDLSKIEAGMMRIVKAPFSVRGLIHSIETLFKERVNEKGLQLNCSVASNVPDTL 348

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI   ++ NA+ FS  G   +L     A   N      VK+ G  I  +   
Sbjct: 349 IGDATRLTQILVNLIGNALKFSDGGMIEVLVSRVWADGSNIQLGVKVKDTGIGISNEKLD 408

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F RF        R   G GLGLSIV++ I L GG++ + S
Sbjct: 409 KIFERFNQAEDSITRNYGGTGLGLSIVKTLIELQGGNIEVHS 450


>gi|189466762|ref|ZP_03015547.1| hypothetical protein BACINT_03138 [Bacteroides intestinalis DSM
           17393]
 gi|189435026|gb|EDV04011.1| hypothetical protein BACINT_03138 [Bacteroides intestinalis DSM
           17393]
          Length = 704

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 16/234 (6%)

Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L EKNE L        ++D +K+ F+Q++S+E+R+PL  I+GF+ +L T  +     +++
Sbjct: 457 LQEKNEELTVARDHAEESDRMKSFFIQNMSHEIRTPLNAIVGFSQVLSTPDMEVDEEEKA 516

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++   I  +S +L  L+ND+LDLA++++G   ++ +    N+L    + ++A+ +H N  
Sbjct: 517 EFSMLIQQNSELLTTLINDVLDLASLESGKYTMHLAPHRCNEL---CQIAMASVVHRNPK 573

Query: 668 RIK--VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSV 723
            +K    SD      FV D++RL Q+    L+NA   + +G   +  +  +N G   FSV
Sbjct: 574 EVKSYFTSDAPNDFLFVTDKERLQQVLINFLTNAEKHTVRGEIHLHCSLTENPGKITFSV 633

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + G  +P D    VF+RF       Q  G GLGL+I         G V +  S
Sbjct: 634 TDTGPGVPADQADYVFDRFSKLDEFKQ--GTGLGLNICSIIAGRLKGEVKLDKS 685


>gi|160943810|ref|ZP_02091041.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444984|gb|EDP21987.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
          Length = 648

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 126/223 (56%), Gaps = 15/223 (6%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLN 622
           A+  K  F+ ++S+++R+P+  IIGFT L  T     +++K+    Y++ IS SS  LL+
Sbjct: 135 ANRAKREFLFNMSHDIRTPMNAIIGFTSLAATH----VDNKEQVLDYLKKISTSSQHLLS 190

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFV 681
           L+ND+LD++ +++G +K+    + L DL+++++  I   +    + + + + D      +
Sbjct: 191 LINDVLDMSRIESGKVKIEEKAVHLPDLVHDIRSIIQPNISSKRLSLFIDTMDVVDEDII 250

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMC 735
            D  RL Q+   ILSNA+ F+  G  V ++      A +  G++ F +K+NG  I ++  
Sbjct: 251 TDPLRLNQVLLNILSNAIKFTPTGGMVSIRIAQKPGAPKGCGNYEFRIKDNGIGINKEFQ 310

Query: 736 KSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           K +F  F    ++     +G GLGLSI ++ ++L GG +++ S
Sbjct: 311 KHIFEEFTREESSTVSGIQGTGLGLSITKNIVDLMGGTITLES 353


>gi|144898313|emb|CAM75177.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 935

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 134/269 (49%), Gaps = 21/269 (7%)

Query: 538 TMLTF-VNVTDSVRAERALTEKN-EALRKA-------DEIKNSFVQHVSYELRSPLTNII 588
           ++LTF V V   + A  AL +   E LR+A       ++ K+ F+  +S+E+R+P+  II
Sbjct: 262 SVLTFAVMVAKQILAGSALLQAMVEDLRQAKTGADAANQAKSEFLATMSHEIRTPMNGII 321

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T LL  ++L      Q+ +   +  S+  LL ++NDILD + ++AG ++   ++  L 
Sbjct: 322 GMTSLLLDTRL---ERDQAHFANTVRVSAESLLTIINDILDFSKMEAGKLEFEETSFELV 378

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L+  V   +  ++ + N+ +   I     G F  D  RL Q+   +  NA+ F+++G  
Sbjct: 379 PLIEGVVDILGPRLRDKNLDLSCFIPPAAHGVFRGDAGRLRQVLLNLAGNAVKFTNQGG- 437

Query: 708 VILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
           V+L+   D+ D       F++ + G  IPE     +F  F        RR  G GLGL+I
Sbjct: 438 VVLEVMVDDSDPARALLRFTITDTGIGIPEAAKGKLFGTFTQAEASTARRFGGSGLGLAI 497

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + + GG +   SS+   +T   ++P
Sbjct: 498 CKRIVTMMGGDIGFDSSEGKGSTFWFQVP 526


>gi|182435566|ref|YP_001823285.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
 gi|178464082|dbj|BAG18602.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1840

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1342 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1401

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1402 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1461

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1462 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEA 1521

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I       +F  F        R+  G GLGLSI      
Sbjct: 1522 GSLRDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1581

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1582 LLGGEIHAASEPGRGSTFTLYLP 1604


>gi|119503084|ref|ZP_01625169.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
 gi|119461430|gb|EAW42520.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
          Length = 1448

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+  +S+E+R+PL  IIG  +LL  +       +QS++      S   LL+L+++IL
Sbjct: 842  KSEFLAVMSHEIRTPLHGIIGMNELLLKT---DTTPQQSRFARAALNSGKTLLHLISEIL 898

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
            DLA ++A  M +      L  +++EV            +++  I D  L GS+  D Q++
Sbjct: 899  DLAKIEADRMDIESVEFDLVSVIDEVCYLQGEPAQRKGLKLDFIPDAALAGSYRGDPQKI 958

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             QI + ++ NA+ F+  G   +      +GD    V + G  IP+D    VF +F     
Sbjct: 959  RQIITNLVGNAIKFTESGRITVALGVDASGDVRMVVDDTGDGIPDDARTRVFEKFTQADT 1018

Query: 748  RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
               R+  G GLGL+I  +F  + GG +SI +   G  T
Sbjct: 1019 STTRQYGGTGLGLTICRNFAEVMGGSLSIETPTPGTGT 1056


>gi|266620347|ref|ZP_06113282.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           hathewayi DSM 13479]
 gi|288868059|gb|EFD00358.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           hathewayi DSM 13479]
          Length = 446

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 9/230 (3%)

Query: 569 KNSFVQHVSYELRSPL-------TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +N F+   S+ELRSPL       T I    +     +      KQ+QY++ I A  + + 
Sbjct: 210 QNEFIAAASHELRSPLAVIESSVTAIAAAEESSAAPRSAECMEKQTQYLKNIRAECSRMA 269

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            LV D+L LA+ DAG   +   T+ ++ LL E  +        + IR+ + + +  L   
Sbjct: 270 ALVGDMLLLASTDAGSWSVKRETVDMDTLLIETYELYEPVCRSSGIRLFLDLPEETLPHI 329

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+ + +L NA+ ++ +   + + AA +  +   SV + G  IP +    +F+
Sbjct: 330 TGDSFRLKQLLTILLDNAVSYTPEDRGITISAAANGNELTISVADQGCGIPPEARAHIFD 389

Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF   ++ R  +R  GLGLSI +    LHGG +S+  ++ G  T   ++P
Sbjct: 390 RFYRGDSSRTDKRHFGLGLSIAKELAVLHGGRISVGETEGGGATFWIKLP 439


>gi|182680138|ref|YP_001834284.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182636021|gb|ACB96795.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 647

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F   +S+E+R+P+  I+G T+LL  +    L  +Q  YVE I  S + L +L + +L
Sbjct: 114 KTEFFAKISHEIRTPINGILGLTELLLAT---GLTPEQKNYVEAIRGSGSALASLTDALL 170

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D + ++AG M L      ++ L+  V + +A K     + I   I+     + V D  RL
Sbjct: 171 DFSKIEAGKMILAEEPFGISPLVEGVTELLAPKAQGKGLDIASSIALDVPETLVGDPLRL 230

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+   +  NA+ F+ +G  + +K  R++ D   F V + G  +P    +++F  F    
Sbjct: 231 RQVLLNLAGNAVKFTEQGG-IGVKVFRESADSLCFEVIDTGPGVPPTCRETIFQDFEQGT 289

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +G   G GLGL+I +  +   GG + ++S  EG    +  +P
Sbjct: 290 QKGCESGTGLGLAISKRLVERMGGSLHLASPLEGGALFSFSLP 332


>gi|170691707|ref|ZP_02882871.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
 gi|170142991|gb|EDT11155.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
          Length = 957

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 118/215 (54%), Gaps = 7/215 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622
           +++ ++NS +  +S++LR+PLT I+GF+ +L  S+  + ++++  + V+ I   +  +  
Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSREHAADARRDDELVDAIHEEALRMTG 735

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +V ++LD+A + AG ++LN    +L + +    ++    +  + +R+++ +D  L     
Sbjct: 736 IVTNLLDMARLQAGSLQLNRQWTLLEETVGAALRACKRVLSGHPVRVELAADLPLLQL-- 793

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FI-FSVKNNGSSIPEDMCKSV 738
           D   + ++FS +  NA  ++S G+ + + A R + D   F+  ++ +NG  +P  M   V
Sbjct: 794 DAVLMERLFSNLFENAAKYTSTGTPLTIGAQRFDADGKSFVRVTIDDNGPGLPAGMETRV 853

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           F +F        + G+GLGL+I  + +  HGG + 
Sbjct: 854 FEKFTRGEKESAKPGIGLGLAICRAIVEAHGGSIG 888


>gi|153806801|ref|ZP_01959469.1| hypothetical protein BACCAC_01075 [Bacteroides caccae ATCC 43185]
 gi|149131478|gb|EDM22684.1| hypothetical protein BACCAC_01075 [Bacteroides caccae ATCC 43185]
          Length = 623

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q  
Sbjct: 381 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQQS 438

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L N+V  S++     +N  
Sbjct: 439 YYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCNQVVASVSFSRRSDN-- 496

Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKN 725
            + + +    SF    D QR+ Q+   ++SNA  F+ +G  T+      +    +FSV +
Sbjct: 497 -QFLFNTSFESFRMETDVQRMQQVIINLMSNADKFTKQGKITLDFSVNEETQMAVFSVTD 555

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            G  IP++    VF RF       Q  G GLGLSI +  +    G + I     G
Sbjct: 556 TGCGIPKEKQALVFERFEKLNEYAQ--GTGLGLSICKLIVYKWKGEIWIDPDYTG 608


>gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ]
 gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ]
          Length = 735

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 122/224 (54%), Gaps = 11/224 (4%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K+ F+ ++S+E+R+P+  IIG   L   ++L   + +Q  Y+E +  +ST LL+++ND
Sbjct: 354 QAKSEFLANMSHEIRTPMNAIIGLAQLTLETRL---DPQQKSYLERLRNASTALLSIIND 410

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           ILD + ++A  +++ +  + L D+L +      T   E  +++ + I+D      + D  
Sbjct: 411 ILDFSKIEAHKIEIAHLELNLADILQDGVTLFQTAAKEKGLKLSLEIADDIPQHLIGDPL 470

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFS--VKNNGSSIPEDMCKSVFNR 741
           RL Q+ + ++SNA+ F+ +GS  +    A RD+   I    V + G  I ++  + +F  
Sbjct: 471 RLGQVLNNLISNAVKFTERGSVTVRAELADRDDQQVIIRILVSDTGIGIDKEQSERLFQP 530

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           F        RR  G GLGLSI  + + L GG +++SS  D+G T
Sbjct: 531 FTQADGSIVRRFGGTGLGLSIARNLVELMGGSITLSSCPDQGST 574


>gi|148549273|ref|YP_001269375.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148513331|gb|ABQ80191.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 917

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   +  +Q  Y+  I  S+
Sbjct: 276 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---MTPRQLDYLNTIEKSA 331

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   +  + +I    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIP 731
             S V D  RL QI + ++SNA+ F+ +G T++++A       D      SV++ G  + 
Sbjct: 392 PASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +++F  F    N+   Q  G GLGL I +  I   G  + + S+
Sbjct: 451 PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGDEIGVDST 498


>gi|291448188|ref|ZP_06587578.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
 gi|291351135|gb|EFE78039.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
          Length = 1819

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1323 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1382

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1383 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1442

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1443 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEA 1502

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I       +F  F        R+  G GLGLSI      
Sbjct: 1503 GSLRDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1562

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1563 LLGGEIHAASEPGRGSTFTLYLP 1585


>gi|254445328|ref|ZP_05058804.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259636|gb|EDY83944.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 979

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 13/235 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E  L    E    A++ K+ F+  +S+E+R+PL +++G++DLLK++    LN KQ   +
Sbjct: 448 SEADLILAKERAEAANQAKSEFLAVISHEIRTPLQSVLGYSDLLKST---PLNEKQRSCL 504

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +   ILL +V DILD + +     +L Y  + L  L+ E  ++I        ++  
Sbjct: 505 DTIQSEGKILLRIVQDILDFSNLRKANFELEYGPVRLRRLIEETFRTIKPMADRKGLKAS 564

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSV 723
           +    K+   V +D  RL Q+   +  N++ ++ +G  V+LKA  + G+        F +
Sbjct: 565 LEIAAKVPELVQSDGVRLRQVLLNLFGNSVKYTEEGE-VLLKAYFEKGNAGEELPLKFEI 623

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776
            + G  I E     +F  F+   H  +  R G GLGL+IV   + L GG + + S
Sbjct: 624 LDTGVGIKEADLGRLFEPFIQLEHSSKFPREGAGLGLAIVNRIVELMGGRIDVES 678


>gi|169335527|ref|ZP_02862720.1| hypothetical protein ANASTE_01941 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258265|gb|EDS72231.1| hypothetical protein ANASTE_01941 [Anaerofustis stercorihominis DSM
           17244]
          Length = 896

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 143/258 (55%), Gaps = 6/258 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNE-ALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +++ VN   ++     L EKNE AL +A  ++++ + ++ +S++LR+PLT+I G   +L 
Sbjct: 636 LISMVNECGAILENNYLEEKNEKALLEAKQEKLRANLLRSISHDLRTPLTSISGNASVLL 695

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                  N+K+ +  E +   S  L+NLV ++L +  ++ G M LN    +L++++ E  
Sbjct: 696 KDFDSLDNNKKHELYEDMYDDSMWLINLVENLLSVTRIEDGSMNLNIEPELLSEVIGEAL 755

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + I  K  E+NI+++  ++ +L     D + ++Q+   I+ NA+ ++ +GS + +K  + 
Sbjct: 756 KHINRKSVEHNIKVE--NNDELIMAKMDSRLIMQVIINIVDNAIKYTPEGSDITIKVNKK 813

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSI 774
           NG    S+ +NG  I ++  K++F  F +  +    RRG+GLGL + ++ +N HGG + +
Sbjct: 814 NGYVYTSIIDNGKGISDEGKKNLFKMFYTGGNIADSRRGLGLGLYLCKTIVNAHGGELMV 873

Query: 775 SSSDEGVTTINCRIPSKE 792
             +    T     + ++E
Sbjct: 874 KDNTPKGTIFTFSLKAQE 891


>gi|238024581|ref|YP_002908813.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
 gi|237879246|gb|ACR31578.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
          Length = 1416

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 123/236 (52%), Gaps = 9/236 (3%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            EALR AD  K+ F+  +++ELR+PL  I   +++L    L   + K S   + I    T 
Sbjct: 1048 EALRVADRQKDEFLAMLAHELRNPLAPIANASEVLLRIPLS--DPKLSFATDIIRRQITQ 1105

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            L  LV+D+LD++ +  G + L    + L  ++++  ++IA ++HE   R+ + + G+   
Sbjct: 1106 LSRLVDDLLDVSRITQGRIVLQRQPVELASVISQAVETIAPRLHERRHRLSIDTAGEPRH 1165

Query: 680  F--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736
                 D  RL+Q    IL+NA+ ++     + +   R  G+  +  V +NG+ I  ++  
Sbjct: 1166 LWVQGDMARLVQCVGNILANAVKYTDPEGAIRVW-TRSEGELAVIGVSDNGTGISAELLP 1224

Query: 737  SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
             VF+ FV +     R   G+G+GL+IV+  + +HGG +S  S   G  +T   R+P
Sbjct: 1225 HVFDLFVQSERTLDRALGGLGVGLAIVKRLVAMHGGTISAQSGGLGCGSTFEIRLP 1280



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 5/234 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +AL + D  K +F  +VS+E R+PLT ++G  + L  +    +  + SQ ++    + 
Sbjct: 324 RADALAEIDRAKTAFFTNVSHEFRTPLTLMLGPIEELLAAP-DPVRPEASQALQVAHRNG 382

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVN +LD + ++AG ++  +    L  L  ++  +  + M   N+   V  +   
Sbjct: 383 LRLLRLVNSLLDFSRLEAGRLQARFVQTDLAKLTTDLASNFRSLMERANLSFTVDCEPIS 442

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR+   +I   +LSNA  F+ +G   +    RD  + +  V + G  I       
Sbjct: 443 APVAIDREMWEKIVLNLLSNAFKFTMEGGVSVALRQRDRVELV--VSDTGIGIAAQELPR 500

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           VF RF  +  A      G G+GL++V+  + +HGG V ++S     TT    IP
Sbjct: 501 VFERFHRIEGARGRSFEGSGIGLALVDELVRMHGGKVEVASELGKGTTFTVAIP 554


>gi|215433475|gb|ACJ66703.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2151

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 20/245 (8%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A+ AL EK E L    + K+ F+ ++S+ELR+PL +++  +  L  +  G+L S+Q ++
Sbjct: 1435 QAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDNVDGNLTSRQVEF 1494

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I AS   LL L+NDILDL+ +++G M ++   +   DL   V ++      +  +  
Sbjct: 1495 AKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDRTFRQVADKKGLEF 1554

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---------------VILKAA 713
             + + D   G    D +RL Q+   +LSNA  F+  GS                 +L AA
Sbjct: 1555 HIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFTESGSVSLDIGLAKGGWSPDHAMLSAA 1614

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                   F+V + G  IP+D  + +F  F        R+  G GLGLSI      L GG 
Sbjct: 1615 --PAVVAFTVVDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREIARLLGGE 1672

Query: 772  VSISS 776
            + + S
Sbjct: 1673 IRLES 1677


>gi|298248741|ref|ZP_06972546.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551400|gb|EFH85266.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 821

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 125/245 (51%), Gaps = 25/245 (10%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K++F+   S+EL++PLT +      L+T+ L    +KQ      I AS+ 
Sbjct: 587 NSARKELEQRKDAFISMASHELKTPLTAL-----KLQTALLHRQLAKQG-----IPASAP 636

Query: 619 ILLN----------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            L N          LV+++LD++ + AG ++    T+ L+ LL E+ +++      + I 
Sbjct: 637 ALSNMEGQINKVTRLVDELLDVSKIQAGRLEYLQETVNLDALLREITETMQQTSPSHRIV 696

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++ I +    S + DR RL Q+F  ++SNA+ +S    TV +  +         V+++G 
Sbjct: 697 VRGIVET---SLIGDRDRLGQVFINLISNAIKYSPDAKTVEMDLSASEDAVTIQVRDHGL 753

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP + C  +F+RF  V++  +    G+G+GL IV   +  H G +++ S     +T   
Sbjct: 754 GIPREQCDKIFDRFYRVTDPKQKAIHGLGMGLYIVAEIVKRHRGTITVDSEVGKGSTFTV 813

Query: 787 RIPSK 791
            +P K
Sbjct: 814 TLPRK 818


>gi|259418142|ref|ZP_05742061.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259347048|gb|EEW58862.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 516

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 156/353 (44%), Gaps = 24/353 (6%)

Query: 204 FLVWHRDQAGDILWANISYKK-NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
           + VW +     + W N++Y + N +  G    +    S  LF   +   M S  A     
Sbjct: 159 YPVWLQSDDARVTWTNLAYDRLNQKIRG----RGNDTSAPLFPN-LDAPMSSGRA----- 208

Query: 263 CETVS-TLEHGNNKSYKIVRVLNSFGEAGI---AIDVSK----EITVNDQLTHTYEILHN 314
            E VS  L   + K +  V    +  EAG    A+DV+     EI   + +    +    
Sbjct: 209 -ERVSIELPETDKKLWYNVSTTET--EAGWLCHAMDVNAVVDAEIAQRNFVQTLAKTFAQ 265

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           L++ +AIFD+NR L   N   ++L  +  +FL++ P+     + LR    +PE  N+ +W
Sbjct: 266 LSIGLAIFDRNRQLVLFNPVLIDLTALPASFLSSRPNMMSFFDRLRDQRMMPEPKNYSSW 325

Query: 375 KENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
           +  +  + +++    +++TW LP+G    V    +P G   ++FE++T ++ L  ++ + 
Sbjct: 326 RHQMADLLEAAAEGRYQETWSLPSGSVYSVSGRPHPDGAIAFLFEDITAEITLTRQFRSE 385

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           +++    +DH+ +  AVFG DG +  SN A+ ++WKT+ +       I +   T      
Sbjct: 386 LELGQSILDHIDDAFAVFGTDGSMVYSNTAYHTMWKTDPDASFAKISITDACRTWQELSG 445

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            +  W      +     +R      +++ +   L   +  L N   M+ F  +
Sbjct: 446 PTPTWGEVRDFVAGGTSDRSDWWSRVDMRNGEQLLCRVQSLQNGSVMVRFQQI 498


>gi|160882267|ref|ZP_02063270.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483]
 gi|156112356|gb|EDO14101.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483]
          Length = 754

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 10/259 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +T    +N+ D    E  L E    L +  E+K SF+ ++S+E+R+PL +I+GF ++L  
Sbjct: 501 KTAGLLLNIQDIKDREEEL-EAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILAL 559

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G  + ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++    + +L++++  
Sbjct: 560 ED-GLSSVEREEYIGTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYM 618

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD 715
           +    +      +K + +  L     DR+RL+Q+ +  L+NA  F+  G   +      D
Sbjct: 619 THQVLIAPRLEFLKEVDNIPL-EINVDRERLIQVLTNFLNNASKFTEIGYIKLGYIYLPD 677

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            G     V++ G  IP +  + +F+RF       Q  G GLGLSI +  I   GG + + 
Sbjct: 678 EGHVRIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQVIIEKLGGRIDLK 735

Query: 776 S----SDEGVTTINCRIPS 790
           S           + CR+ S
Sbjct: 736 SEVGKGSRFTVILPCRVVS 754


>gi|292899966|ref|YP_003539335.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291199814|emb|CBJ46937.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
          Length = 956

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    
Sbjct: 444 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 500

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +   
Sbjct: 501 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLA 560

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              +  + +    D  +   +  D  RL Q+ S +L+NA+ F+  G  ++   A   GD+
Sbjct: 561 MAVKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 618

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           + F V+++G  IP      +F+ F       QR  +G GLGL+I E  +N+  G + + S
Sbjct: 619 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVES 678

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 679 EPGMGSQFIIRIP 691


>gi|295690559|ref|YP_003594252.1| histidine kinase [Caulobacter segnis ATCC 21756]
 gi|295432462|gb|ADG11634.1| histidine kinase [Caulobacter segnis ATCC 21756]
          Length = 264

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 108/215 (50%), Gaps = 3/215 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624
           D+ K SF++ VS+ELR+PL  +IGF+++L     G L + Q  +Y + +  S   LL LV
Sbjct: 36  DDRKRSFLRMVSHELRTPLNAVIGFSEILSHELYGPLGAPQYREYAQIVHESGVKLLKLV 95

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N I+++A ++  +  +  +   L++ L +V + +  ++    + I +I  G L   +AD 
Sbjct: 96  NQIVEIARLEGHVTDIKMTPESLDEALEDVIEGLRPEIARREVIIHIIGQGALPLVIADS 155

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           + L  + S +L NA+  S  G  V + A R   +   ++++ G  +       +   F  
Sbjct: 156 RGLRTMLSNLLQNAVTHSPAGGVVHVAAGRIGAEVEVTIRDQGPGVDSAELPRLLQPFEQ 215

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
                 R   GVGLGL IV+      GG + +SSS
Sbjct: 216 GGSPLTRANEGVGLGLPIVDLLSRAMGGRLKLSSS 250


>gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 1711

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S  AER    + EAL + D  K  F  +VS+E R+PLT I G    L+ S + + + +  
Sbjct: 330 SYEAER---RRAEALAELDRAKTDFFSNVSHEFRTPLTLIAGPVAELRASPVAASDPRVR 386

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +E I  ++  L  LVN +LD + + AG +   +  + L     E+     + +    +
Sbjct: 387 EELEVIERNAQRLGRLVNTLLDFSRIQAGRIDARFEPVDLAATTAELASVFRSAVARAGL 446

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
              V      G    DR    ++   +LSNA+ F+  G  + ++  +++G    SV + G
Sbjct: 447 EFTVDCAPLDGPVHIDRDMWEKVVLNLLSNALKFTFTGG-IAVRLRQEDGSARLSVTDTG 505

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           + IP D    +F RF  V++A      G G+GL++V   + LHGG + + S+ +  TT  
Sbjct: 506 TGIPADELPRLFERFHRVADARGRSGEGSGIGLAMVRELVGLHGGTIDVDSAPDTGTTFT 565

Query: 786 CRIP 789
             +P
Sbjct: 566 VTLP 569


>gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis
           C6786]
          Length = 925

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 129/261 (49%), Gaps = 10/261 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+ S 
Sbjct: 414 LCTLLDISLRKESELKLEEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSP 473

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +QS+ ++ + + S  LL+++NDILDL+ V++G M L      ++ LL ++  + 
Sbjct: 474 ---LSMRQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDIVDAY 530

Query: 659 ATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A       + +   + +G    +  D  R+ QI S ++ NA+ F+  G   I     K  
Sbjct: 531 APLAESKGLELFSSVGEGIANYYSGDPARIHQILSNLIGNAIKFTDSGHISIDVHRAKTG 590

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             N      V + G  I  D   ++F+ +        RR  G GLGL + +    + GG 
Sbjct: 591 PGNSAIEIWVSDTGIGIQPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLATIMGGS 650

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + I S  E  TT+   +P  E
Sbjct: 651 IEIDSLPEFGTTVTVVLPLHE 671


>gi|62289544|ref|YP_221337.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82699473|ref|YP_414047.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023801|ref|YP_001934569.1| sensor histidine kinase [Brucella abortus S19]
 gi|237815042|ref|ZP_04594040.1| sensor histidine kinase [Brucella abortus str. 2308 A]
 gi|254688862|ref|ZP_05152116.1| sensor histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|254696993|ref|ZP_05158821.1| sensor histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729894|ref|ZP_05188472.1| sensor histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|256257110|ref|ZP_05462646.1| sensor histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260545699|ref|ZP_05821440.1| sensor histidine kinase [Brucella abortus NCTC 8038]
 gi|297247957|ref|ZP_06931675.1| two-component system, PleD family, sensor histidine kinase DivJ
           [Brucella abortus bv. 5 str. B3196]
 gi|62195676|gb|AAX73976.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82615574|emb|CAJ10557.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Bacterial sensor protein,
           C-terminal:Histidine kinase [Brucella melitensis biovar
           Abortus 2308]
 gi|189019373|gb|ACD72095.1| sensor histidine kinase [Brucella abortus S19]
 gi|237789879|gb|EEP64089.1| sensor histidine kinase [Brucella abortus str. 2308 A]
 gi|260097106|gb|EEW80981.1| sensor histidine kinase [Brucella abortus NCTC 8038]
 gi|297175126|gb|EFH34473.1| two-component system, PleD family, sensor histidine kinase DivJ
           [Brucella abortus bv. 5 str. B3196]
          Length = 609

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  +  H G + + S     T +  R+P
Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 556


>gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 543

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  +A   A + K+ F+ ++S+ELR+PLT ++G T++L T +    + ++ Q +  
Sbjct: 156 RQLAE--QAAHAASQTKSEFLANMSHELRTPLTAVMGLTEVLNTEE---TDQEKRQLLAM 210

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      LLNL+NDILDL+ ++AG ++ N       ++  EV  S+       +I +   
Sbjct: 211 IRQGGDHLLNLINDILDLSKIEAGRIENNKIACQPGEIAAEVVDSLRVSAAAKSIELSWT 270

Query: 673 SDGKLGSFVADRQ-RLLQIFSKILSNAMDFSSKGS-TVILKA-ARDNGDFIFSVKNNGSS 729
            D  + + +A    RL QI   +  NA+ F+  GS TV L+    D+    FSV + G  
Sbjct: 271 MDDNMPTTIAAAPIRLRQILFNLAGNAVKFTDHGSVTVHLQIDPLDSQLLRFSVTDTGEG 330

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +  K +F  F        RR  G GLGLSI +      GG + + S     +T   R
Sbjct: 331 IPPEGLKLLFEPFSQLDGTAARRRDGAGLGLSISKRLAETMGGTIEVESQPGQGSTFALR 390

Query: 788 IP 789
           +P
Sbjct: 391 LP 392


>gi|319653245|ref|ZP_08007347.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2]
 gi|317395166|gb|EFV75902.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2]
          Length = 454

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 5/214 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E +N F+  +S+ELR+PLT I G+ D+++   L     +++QY+  I   +  L ++V +
Sbjct: 222 EERNEFLSSISHELRTPLTYIKGYADIVQKRNLSP--EERNQYLSIILEETNRLSDMVKN 279

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           + DLA +D     +   +I L D + +++   +    E  + + V     + +  AD  R
Sbjct: 280 LFDLAKIDKNTFDIKKRSIDLKDFMKKIETKFSPAFTEKGMLLSVNCRESI-TISADASR 338

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           L QI   +L NA+ +S+ G    +   R     I ++K+ G  I E+    +FNRF  V 
Sbjct: 339 LEQIIFNLLDNAIKYSTAGDKTTININRTKKHVIINIKDTGRGISEEELPFIFNRFFRVD 398

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +      G GLGL+IV+  ++ HGG +S+ S +
Sbjct: 399 KSRARALGGTGLGLAIVKELVHAHGGTISVCSRE 432


>gi|294054948|ref|YP_003548606.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614281|gb|ADE54436.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 638

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 13/226 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+E K+SF+  +S+E+R+PL  +IGF D+L  ++L   N++Q +Y++ +  SS  L+ L+
Sbjct: 230 ANEAKSSFLATMSHEIRTPLNGVIGFIDMLSQTEL---NAEQQEYIQSLQMSSETLMALI 286

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + +++G M+    +I L  LL E  Q    +  +  + +K+    ++   V  D
Sbjct: 287 NDILDFSKIESGRMEFETRSINLVRLLRETTQLFFGEAAKKGVELKLDFSEEVPRVVRGD 346

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFI---FSVKNNGSSIPEDMCKS 737
             R+ QI   +L NA+ F+  GS  +     +    G+     F + ++G  + ED    
Sbjct: 347 ETRIRQILINLLGNAVKFTDTGSIAVAVHCYEPWTTGEVCEIEFEITDSGIGMTEDQVSK 406

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEG 780
           +F+ F+       R+  G GLGL+I +      GG + + S+  EG
Sbjct: 407 LFHPFLQADSSTTRKFGGTGLGLAICKRLSEAMGGRIWATSTVGEG 452


>gi|241665866|ref|YP_002984225.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240867893|gb|ACS65553.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 631

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL          K+   +E I
Sbjct: 237 AESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRG--IEAI 294

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+   ++L++D+LD++ + +G + L    + L D+L   +++I     + NI I+   
Sbjct: 295 ERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKNITIET-E 353

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +     D  RL Q+F  +L+NA+ F+ +G  + L         + +V++ G  I   
Sbjct: 354 FLPVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPT 413

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVTTINCRIP 789
               +F+RF        RR  G+GLGL+I +  + LH G ++ +SS  D G TT+   +P
Sbjct: 414 FLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRG-TTMAVSLP 472


>gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 544

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 10/236 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+   +A   A+  K++F+ ++S+E+R+P+  IIG  DLL  +   SL  +Q +YV    
Sbjct: 148 LSLAQKAAEAANIAKSAFLANMSHEIRTPMNAIIGMADLLWET---SLTKEQREYVGIFR 204

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +   LLNL+NDILDL+ V+AG +KL      +  L+ +  + ++ + +   + +   I 
Sbjct: 205 TAGQNLLNLINDILDLSKVEAGHLKLEQQDFNIKKLVEKTVEFMSVQANIKFLSLSYQIK 264

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729
               G  V D+ RL QI   +L NA+ F+ KG  ++    L    +N    FSV + G  
Sbjct: 265 PDVPGFVVGDQNRLQQILVNLLGNAIKFTEKGEVILIIEKLSMQEENVFLKFSVSDTGIG 324

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           I ++  + +F  F         +  G GLGL+I +  +   GGH+ + S  E  +T
Sbjct: 325 IEKEKSEIIFESFTQADASTTSKFGGTGLGLTICKRLVEAMGGHIGVESEIEQGST 380


>gi|89097898|ref|ZP_01170785.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087400|gb|EAR66514.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 933

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 130/260 (50%), Gaps = 16/260 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  +A + + EK E L  + + K+ F+ ++S+ELR+PL +I+  +++L   +   +  +Q
Sbjct: 498 DLQQANKDIEEKAEQLLLSSKYKSEFLANMSHELRTPLNSILLLSEMLSEGQGEEIPEEQ 557

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +  + I +S   LL+L+NDILDL+ ++AG + + +  + L++L + ++ + +    + N
Sbjct: 558 KEVAKVIHSSGKDLLSLINDILDLSKIEAGKLDMLFEEMNLSELPSYLEYNFSHLAQKKN 617

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------- 715
           +   + I++   G    D+QR  QI   +LSN+  F+ KGS  I     D          
Sbjct: 618 LDFNISIAEDLPGIMYTDQQRFQQIIKNLLSNSFKFTEKGSVSIEVNLADPEKTKNLPLK 677

Query: 716 -NGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              DF   +K  + G  IPE     +F  F        R+  G GLGLSI   F  L GG
Sbjct: 678 SKTDFWTEIKVSDTGIGIPESKQSIIFEAFQQGDGASVRKYGGTGLGLSICREFAKLLGG 737

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + + S +   +T    IPS
Sbjct: 738 WIFVDSEEGKGSTFTLFIPS 757


>gi|315579767|gb|EFU91958.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0630]
          Length = 393

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 128/230 (55%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S     +  +  Y+ A    LL
Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             V+D+ +   V    + ++ +T  +  L+ ++      ++ + N++I+V ++       
Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEVKKINMQIQVKANPASLMME 274

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L+++F+ +LSNA+ +   G  ++++  +   + I +V+N+G +IP+     +F+R
Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGL+I +S + LHGG++  + SD+  T+    +P
Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383


>gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW]
 gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW]
          Length = 878

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA+ A  E   A R     K+ FV  +S+E+R+PL  ++GF DLL  +    L ++Q ++
Sbjct: 374 RADEARAESEAANRA----KSDFVAVMSHEVRTPLNALLGFADLLLQTP---LTAEQREW 426

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V     +   LL +V+D+LD + ++AG ++++     L  L       +     E  + +
Sbjct: 427 VTLQREAGEALLTVVSDVLDFSKLEAGRLEVDPHPFQLARLARSTSDLVRPTAEERGLAL 486

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +V  D +L   V  D +R+ Q+   +L+NA+ F+ +G   +      +G   F V + G 
Sbjct: 487 RVAVDPRLPEVVQGDAKRVRQVLLNLLNNAVKFTERGHVALAVFPVADGRVRFEVLDTGI 546

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            I  +  + +F  FV       RR  G GLGL+I    ++L GG + + S+
Sbjct: 547 GIAPEQQERLFQEFVQADRATARRYGGTGLGLAICRRLVDLMGGAIGVESA 597


>gi|463195|gb|AAA20829.1| pectate lyase [Pseudomonas viridiflava]
          Length = 896

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 254 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQYDYLGTIEKSA 309

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 310 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 369

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 370 PL-ALSGDPLRLRQILTNLVSNAIKFTRQG-TIVARAMLEDETEEHAQLRISVQDTGIGL 427

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 428 SSQDVRALFQAFSQADNSISRQPGGTGLGLVISKRLIEQMGGEIGVDST 476


>gi|77464934|ref|YP_354438.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389352|gb|ABA80537.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 849

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 41/421 (9%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           W++ +   +       +      GQ L ++      G  + +  ++T Q+ L        
Sbjct: 153 WRQRMIRRWDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQMRLRA------ 206

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYY 491
                 ID + +G  +F    R+ L N  +R+++      L PG     I         +
Sbjct: 207 -----AIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQF 261

Query: 492 NESDG----WDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTF 542
            E+ G    W   A  + +F    + L G  E   D      V+E+     P+   +   
Sbjct: 262 PEAAGREEEW--LADRLAAF----RHLGGAAEQQLDDGRWLRVIEHET---PDGGRVGLG 312

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+  R + AL     A   A   K++F+ ++S+E+R+P+  I+G  DLL  +    L
Sbjct: 313 VDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET---VL 369

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q  + E I +S   LL ++NDILD + ++A  + L+     L   ++EV   +  K 
Sbjct: 370 TEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKA 429

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
               I + +  D  L + FV D  RL Q+ + ++ NA+ F++ G  +I    L+ A    
Sbjct: 430 RAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRH 489

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           D   +V++ G  I  +    VF  F        RR  G GLGL+I    I L  G V + 
Sbjct: 490 DLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVE 549

Query: 776 S 776
           S
Sbjct: 550 S 550


>gi|323137189|ref|ZP_08072268.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397547|gb|EFY00070.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 814

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 134/275 (48%), Gaps = 9/275 (3%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           L S+  L  S+  L  ++  L       +  AE+   +K EA   A   K+ F+ ++S+E
Sbjct: 482 LESERRLTASVTDLTRSRQTLEMQAQQLATLAEQYHHQKAEA-EAAYLAKSEFLANMSHE 540

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAG 636
           LR+PL  IIGF+++++    GSL S   +YVEY   I      L  +++DILD++ ++AG
Sbjct: 541 LRTPLNAIIGFSEMMQAEPFGSLGS--PKYVEYCNNIRQGGAYLNEVLSDILDMSRLEAG 598

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           +++L    + + D       S  ++    NI+I   +D +L   + D   +++    +LS
Sbjct: 599 LVRLAEREVNVADATRRAIASWRSRADAKNIQIVAEADDRL-RCIGDESAIVKALGVLLS 657

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
           N++ F+  G  + L+A R        V++ G  I       +   F  +A       +G 
Sbjct: 658 NSIKFTDAGGFIRLRARRHGAAIAIFVEDTGRGIDPRAISRLGRPFEQSADLMENGMKGS 717

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I  + ++LHGG + I S     T    R+P
Sbjct: 718 GLGLAIARALVDLHGGALRIRSRLGLGTIAMMRLP 752


>gi|53715746|ref|YP_101738.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60683680|ref|YP_213824.1| two-component sensor histidine kinase [Bacteroides fragilis NCTC
           9343]
 gi|253566441|ref|ZP_04843894.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265767312|ref|ZP_06094978.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|52218611|dbj|BAD51204.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60495114|emb|CAH09933.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis NCTC 9343]
 gi|251944613|gb|EES85088.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263252617|gb|EEZ24129.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301165192|emb|CBW24762.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis 638R]
          Length = 522

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 128/247 (51%), Gaps = 9/247 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  + E+ L        +AD +K+SF+ ++S+E+R+PL  I+GF+ L+  +      
Sbjct: 281 DVTEIKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEA---DNE 337

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY + +  +ST+LLNL NDILDL+ ++AG ++L+Y  + L D+  ++ + +  K  
Sbjct: 338 CEKRQYADIVEHNSTVLLNLFNDILDLSALEAGSLELSYHPVRLKDICLQLYE-LHVKSV 396

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           +  +R+ +           D +R+ Q+   +++NA+ F+S G   I    +   D + F 
Sbjct: 397 KPEVRLVLDEVDSQLCIQGDWERISQVLVNLITNAIKFTSVGE--IHFGFQKKADMVQFY 454

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + + G  IP +   ++F RF       Q  G GLGL+I    +   GG + + S     T
Sbjct: 455 MSDTGKGIPAERVATIFQRFGKIDDFVQ--GTGLGLTICRMLVEKMGGRIWVRSKQGEGT 512

Query: 783 TINCRIP 789
                +P
Sbjct: 513 VFYFTLP 519


>gi|121488659|emb|CAI64505.1| ethylene receptor [Prunus domestica subsp. insititia]
          Length = 741

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 140/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L  +T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709
               + + ++ + + +D  + + V D +RL+QI   ++ NA+ FS +GS  I        
Sbjct: 432 PVASVKKLSVSLNLAADLPVQA-VGDEKRLMQIVLNVVGNAVKFSKEGSISITAFVAKSE 490

Query: 710 -LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
            L+  R         DN  ++   VK++GS I P+D+ K +F +F        R   G G
Sbjct: 491 SLRDFRSPEFYPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQSLATRNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGPG 574


>gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 1084

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
            V+ T +   E+ L    E    A   K+ F+ ++S+E+R+P+  IIG T L L+T    
Sbjct: 540 LVDDTQNKELEKQLVLAKEEAETASRAKSDFLANMSHEIRTPMNGIIGMTHLTLQTE--- 596

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L S+Q  Y+  IS S+  LL +VNDILD + ++AG +++ ++   L  +L EV      
Sbjct: 597 -LTSRQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADL 655

Query: 661 KMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
              E  +  +  IS         D  RL QI   ++ NA+ F+  G  ++ +   R  G 
Sbjct: 656 SAAEKGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAIKFTQSGHVLVSVTQERHEGS 715

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                FSV + G  +  +   ++F  F    +   RR  G GLGL+I +  +NL GG + 
Sbjct: 716 KTRLRFSVSDTGIGMTSEQIGNLFESFTQADNSTTRRYGGTGLGLAICKRLVNLMGGEIH 775

Query: 774 ISSS 777
           + S+
Sbjct: 776 VRST 779


>gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei
            87.22]
 gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces
            scabiei 87.22]
          Length = 1424

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 845  QARQELETRAQQLALASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 904

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M +    + L  LL  V+ +      + ++  
Sbjct: 905  AGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPERVPLRKLLEYVEATFRPMTTQKSLDF 964

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAA---------RDNG 717
             V  + G     + D  RL QI   +LSNA+ F+  G  V  I  AA         R   
Sbjct: 965  TVATAPGTPADLLTDDSRLRQILRNLLSNAVKFTEHGGVVLSIEPAADREVPTGVLRGGA 1024

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F VK+ G  IP+   +++F  F        R+  G GLGLSI     +L GG V++ 
Sbjct: 1025 VVAFRVKDTGIGIPQQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 1084

Query: 776  SSDEGVTTINCRIP 789
            S+    +T    +P
Sbjct: 1085 STPGQGSTFTLYLP 1098


>gi|170697003|ref|ZP_02888099.1| histidine kinase [Burkholderia ambifaria IOP40-10]
 gi|170138177|gb|EDT06409.1| histidine kinase [Burkholderia ambifaria IOP40-10]
          Length = 1026

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 127/245 (51%), Gaps = 10/245 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T +++T   +AE  L E  EA   A++ K++F+  +S+E+R+PL  IIG  +L++ ++
Sbjct: 492 LCTLLDITTRKQAEEKLREAREAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQ 551

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           + +   ++   +  I +SS  LL ++ND+LDL+  ++  M L      L  ++NEV    
Sbjct: 552 MAAPLRRR---LGTIMSSSDALLRVINDVLDLSKAESNQMALESIPFDLRRVVNEVAAIF 608

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714
                  ++ +   I+      +V D  RL Q+ S ++SNA+ F+ +G   I   L  A 
Sbjct: 609 RPLADAKSLVLTCRIAPDLANGYVGDATRLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAG 668

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             G  +  +V + G  IPED   ++F+ +V       RR  G GLGL +    + L GG 
Sbjct: 669 PAGRCVEIAVSDTGIGIPEDGLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGA 728

Query: 772 VSISS 776
           +++ S
Sbjct: 729 LNVDS 733


>gi|71734710|ref|YP_275861.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555263|gb|AAZ34474.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 917

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|320194695|gb|EFW69325.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           WV_060327]
          Length = 778

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IPED    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1461

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 924  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 981

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 982  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1041

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1042 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1101

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1102 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1141


>gi|240140253|ref|YP_002964731.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium
           extorquens AM1]
 gi|240010228|gb|ACS41454.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium
           extorquens AM1]
          Length = 914

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  ++  +A+  K+ F+  +S+E+R+P+  ++   +LL ++ L     +Q +Y + I+
Sbjct: 259 LIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL---PPRQQRYAKVIA 315

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD A V+AG +++    +   D+ + V    A +     + +    D
Sbjct: 316 RSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSAGLDLAAQID 375

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF--SVKNNGSSI 730
           G +  S + D  RL Q+    +SNA+ F++ G  ++ ++   ++   +   +V + G  I
Sbjct: 376 GDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEHESSGRVLRIAVSDTGIGI 435

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+D    +F  F        RR  G GLGLSI E  I   GG V + S     +T   RI
Sbjct: 436 PQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESRLGEGSTFWARI 495

Query: 789 P 789
           P
Sbjct: 496 P 496


>gi|153808637|ref|ZP_01961305.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
 gi|149128959|gb|EDM20176.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
          Length = 869

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 125/241 (51%), Gaps = 4/241 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I+GF+DLL  +       + +Q++
Sbjct: 629 AEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTS-NFTEEEVTQFI 687

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ +  +LL L+NDILDL+ +++G M+  ++   L  LL  V  S    M      + 
Sbjct: 688 ATINKNCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPAGVELVL 747

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSS 729
            +  G       D  RL Q+ + +++NA  F+  G  T   +   + G     V++ G  
Sbjct: 748 RMPAGDKKYLTTDNVRLQQVVNNLINNAAKFTGSGFITFGYEEDEEPGYTRIFVEDTGVG 807

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I E+  + +F RF    +  Q  G GLGLSI ++ +    G +S++S     T    R+P
Sbjct: 808 ISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 865

Query: 790 S 790
           +
Sbjct: 866 N 866


>gi|1401270|gb|AAB08575.1| RcaE [Fremyella diplosiphon Fd33]
          Length = 655

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 11/239 (4%)

Query: 563 RKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           RKA E +K+ F+  +S+ELR+PLT++     +L T +LG+L+++  Q +     S+  L+
Sbjct: 414 RKAIERMKDEFISIISHELRTPLTSLHSALKILATGRLGTLSTEGQQMLGIADDSTERLV 473

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVN++LDL  +++G + +        +L+  ++ + A +       + ++   +  S  
Sbjct: 474 RLVNNVLDLQRIESGKVIMECQACNAANLM--IQAAEAMQAMAQQQEVTLVKQPQDISVW 531

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMC 735
           AD   +LQ  + +LSNA+ FSS G TV L   ++        + +F V++ G  IP D  
Sbjct: 532 ADADYILQALTNLLSNAIKFSSPGGTVWLTVEQEKNSSNNPKEVVFRVRDEGQGIPADQL 591

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           + +F RF  V ++   ++ G GLGL+I    I  H G +   S+    +T    +P+ E
Sbjct: 592 ERIFERFQQVDSSDSRKKGGTGLGLTICRKIIEQHNGRIWAESTPGCGSTFAFTLPTLE 650


>gi|330941410|gb|EGH44230.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 917

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1476

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 939  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 996

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 997  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1057 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1116

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1156


>gi|240146890|ref|ZP_04745491.1| sensory box sensor histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
 gi|257200964|gb|EEU99248.1| sensory box sensor histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
 gi|291534543|emb|CBL07655.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Response regulator
           receiver domain [Roseburia intestinalis M50/1]
          Length = 421

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 132/271 (48%), Gaps = 25/271 (9%)

Query: 537 QTMLTFVNVT--------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           QTML  V +         D+VR  R   +++ A  +  E+K  F+  +S+E+++P+  I+
Sbjct: 3   QTMLIAVLIAALVGLFLFDTVRLRRMQVQRDAAKEEVAEVKTEFLSRISHEIKTPMNVIV 62

Query: 589 GFTDLLKTSKLGSLNSKQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           G T       LG   ++  + +E     I  +S  L+ L+ND++D++ ++ G   L+   
Sbjct: 63  GAT------ALGLEETEHPERMEECLNRIRGASEFLMGLLNDLVDMSKIENGKFHLHPKP 116

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
               + LNEV+  +        IR  +  +    + + D  R  QIF  +LSNA+ F+ +
Sbjct: 117 YSFTEFLNEVENMMEPMCERKWIRFHMPHEEININMMVDPVRFFQIFFNLLSNAVKFTPE 176

Query: 705 GSTV---ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQR-RGVGLG 757
           G  V   I   A  N  F   + V +NG  + E+  + +F  F   + ++G+   G GLG
Sbjct: 177 GGEVTFRICNYATHNNQFCADYVVSDNGMGMSEEFQQILFQPFTQESVNQGEPGNGAGLG 236

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+IV S ++L GG +++ S  +  T I   +
Sbjct: 237 LAIVRSIVDLMGGTITVKSEPQKGTEIKVHL 267


>gi|254410345|ref|ZP_05024124.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182551|gb|EDX77536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 526

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 126/252 (50%), Gaps = 21/252 (8%)

Query: 552 ERALTEKNEA-LRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           E A  +K EA +RKA        E+K+  V  +S+E R+PL  I+  T+LLK        
Sbjct: 270 EVAERQKAEAEIRKALTTEQELSELKSRVVAMISHEYRTPLAVILTSTELLKRYSTQLSQ 329

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND----LLNEVKQSIA 659
            KQ  Y++ I      +  LV ++L      AG ++ N   + + D    L++E +  + 
Sbjct: 330 EKQQTYLDRIQMGVKQMAQLVEEVLTFNKAQAGELQFNPEPLNMEDFCLQLVDEQRLMVG 389

Query: 660 TKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                   R  +  + +L S  A  D+Q L  I + +LSNA+ +S+KG+TV L   R++ 
Sbjct: 390 D-------RYTLTYNPQLSSGEAELDKQMLRHIVTNLLSNAIKYSAKGTTVSLSLRREDD 442

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I  V++ G  IPE     +F+ F   ++     G G+GLSIV++ ++LH G ++I+S 
Sbjct: 443 TLIIQVQDQGIGIPESEQPRLFSPFFRASNVSTIAGTGMGLSIVKNCVDLHQGQIAIASE 502

Query: 778 DEGVTTINCRIP 789
               TT+   +P
Sbjct: 503 VGKGTTVTVTLP 514


>gi|192361677|ref|YP_001982922.1| putative sensor/response hybrid [Cellvibrio japonicus Ueda107]
 gi|190687842|gb|ACE85520.1| probable sensor/response hybrid [Cellvibrio japonicus Ueda107]
          Length = 916

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 12/230 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R  T   EA   A + K+ F+  +S+E+R+PL  I+G T+LL  ++L     KQ ++   
Sbjct: 245 RQATASAEA---ASQAKSQFLAVMSHEIRTPLNGILGMTNLLLETEL---TPKQKRFARV 298

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S   LL ++NDILD + V+AG ++L      LN L+ ++ +  A   H   + +   
Sbjct: 299 ARRSGEDLLLIINDILDFSKVEAGKLELEIHPFQLNLLVEDLAERYAPIAHAKGLELLCN 358

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGS 728
           +     S   D  RL Q+ + +LSNA+ F+ +G   +   L    DN   + F V++ G 
Sbjct: 359 TPLPPLSAEGDAARLAQVLTNLLSNAIKFTERGEVTLEVKLLLREDNLLHLHFGVRDTGI 418

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I  +  + +FN F        RR  G GLGL+I +  + L GGH+++ S
Sbjct: 419 GIRVEQAERLFNAFTQADSSMTRRYGGTGLGLAISQCLVELMGGHIALES 468


>gi|78221571|ref|YP_383318.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78192826|gb|ABB30593.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 482

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 12/245 (4%)

Query: 549 VRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           VR E A+  TE+ E  R  DE+    +  VS+E+ +PLT +IGFT+ L  +++     +Q
Sbjct: 243 VRMEIAIDITERKEMERMKDEM----ISAVSHEMHTPLTAMIGFTEFLLENEVD--REQQ 296

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ I   +  L  L+N+ L L  + A ++K     + +  LL +          ++ 
Sbjct: 297 KNCLQTIHKETERLSELINNFLQLQRLKASMVKFRIMPVSVGLLLADAAALYTAASRKHT 356

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I ++   D  L     + ++L Q+   ++SNA+ +S  G TV L    D+   +F VK+N
Sbjct: 357 IVVECPPD--LPPVRGNEEQLYQVAGNLISNAIKYSPAGGTVTLGGRADDDMVVFWVKDN 414

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +  + VF RF  V N+ R +  G GLGL++V   +  HGG V + S+ +  +T 
Sbjct: 415 GVGISPEFQERVFERFFRVDNSDRRKVGGAGLGLTLVREIVAAHGGRVWVESTPDAGSTF 474

Query: 785 NCRIP 789
              +P
Sbjct: 475 FVSLP 479


>gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
 gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
          Length = 1053

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 12/251 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
           Q  +   +VT    AE+ L E       A E+K+ F+ ++S+E+R+P+  IIG + L LK
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEDAVEVKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T     L  KQ  YV  I +S+T+LL ++NDILD + ++AG + + +    L ++L+ V 
Sbjct: 326 TE----LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVS 381

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712
                K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G  S  +   
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQVG 441

Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            R  G    +F V + G  + E   +++F  F        R+  G GLGLSI    + L 
Sbjct: 442 ERQPGRIKLLFHVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 769 GGHVSISSSDE 779
            G +S++S  +
Sbjct: 502 EGEISVTSQPD 512


>gi|76803907|gb|ABA55850.1| para-aminobenzoate synthase [Vibrio sp. DAT722]
          Length = 567

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 12/243 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER +  +  A  +++     FV  +++ELR+PL  ++G  +LL  +    L ++Q QY+ 
Sbjct: 189 EREIASRKRA-EESERATKEFVAMINHELRTPLNGVLGSAELLGRT---DLETEQHQYLT 244

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S  +L  ++ND+LD + ++AG+M++        +L + +    A K  E  I   +
Sbjct: 245 NLMQSGELLRVIINDLLDFSKMNAGMMEIIRKDFAWPELESSLMGVFAAKAAEKRIHFSI 304

Query: 672 ISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
             D KLG       D +R+ QI   ++ NA+ F+  G  V+L+    +G   F V++ G 
Sbjct: 305 --DKKLGIPNYLNGDAERITQILVNLVGNAIKFTKLGG-VVLRVEWLDGHLCFDVEDTGI 361

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D   ++F+ FV      +R   G GLGL+I ++ + L  G +S  S ++  T    
Sbjct: 362 GIPLDAQATLFDPFVQVDRSSKRNFEGSGLGLAITKNLVELMDGEISFVSKEKQGTIFKV 421

Query: 787 RIP 789
            IP
Sbjct: 422 SIP 424


>gi|16126721|ref|NP_421285.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
 gi|221235503|ref|YP_002517940.1| sensory transduction histidine kinase pleC [Caulobacter crescentus
           NA1000]
 gi|13638405|sp|P37894|PLEC_CAUCR RecName: Full=Non-motile and phage-resistance protein
 gi|13424035|gb|AAK24453.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
 gi|220964676|gb|ACL96032.1| sensory transduction histidine kinase pleC [Caulobacter crescentus
           NA1000]
          Length = 842

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 183/394 (46%), Gaps = 57/394 (14%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT----------------HIR 481
           + I+ +SE   ++   GR+ + N  +RS++  E   L PG                 H  
Sbjct: 453 DAIESVSEAFVLWDRQGRLLMCNRNYRSVFSLEPKILKPGAARAEVNRFAALAIKQDHPA 512

Query: 482 NIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSV--------------- 525
              A   R     DG W   +        ER++ +G L + +  +               
Sbjct: 513 PDGAKGVREAEMMDGRWIQIS--------ERRTAEGGLVMTAADITAIKTQEEARRRNEE 564

Query: 526 -LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            L+ ++  L  +Q  L  +       A +  TEK +A   A++ K+ F+ ++S+ELR+PL
Sbjct: 565 QLQNAVAGLERSQEQLAEL-------ARKYETEKVKA-ESANKAKSEFLANMSHELRTPL 616

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             I GF++++     G L  ++ + Y + I +S   LL L+NDILD++ ++AG M L + 
Sbjct: 617 NAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFE 676

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           ++ L D+  +  + +  +     +++  I   +L    AD + + Q+   +LSNA+ F+ 
Sbjct: 677 SMHLEDVAEDAVRLVRNRAEAAGLKLD-IDFPQLPEIEADYRAVKQVLLNLLSNAIKFTP 735

Query: 704 KGSTVILKAA--RDN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           +  +V ++A   RD  GD I  SV + G  I ++    +   F  V +      +G GLG
Sbjct: 736 RAGSVTVRAEVRRDPFGDLIKVSVTDTGIGIAKEDLARLAKPFEQVESQFSKTTQGTGLG 795

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L++ +S I +H G + + S+    TT++  +P +
Sbjct: 796 LALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVR 829


>gi|330889404|gb|EGH22065.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 905

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 263 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 318

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 319 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 378

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 379 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 436

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 437 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 485


>gi|256842285|ref|ZP_05547789.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736169|gb|EEU49499.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 622

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 124/242 (51%), Gaps = 10/242 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L   +  Y+ 
Sbjct: 382 EEDLILAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSEL---RQNYIS 438

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I  ++ +LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E   + + 
Sbjct: 439 LIKMNNDLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLD 498

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
              D     F  DR RL QI   +L+NA+  + KG              I F V + G  
Sbjct: 499 ACPD---IIFNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTLEAEEKMIKFYVSDTGCG 555

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D   ++F RFV  +   Q  GVGL L+I +  +   GG++S+ S +   +T    +P
Sbjct: 556 IPKDELDNIFARFVQLSDFEQ--GVGLELAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613

Query: 790 SK 791
            K
Sbjct: 614 MK 615


>gi|209523453|ref|ZP_03272008.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209496195|gb|EDZ96495.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 655

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 42/352 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPA--------FRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           +D   EG+     DG+I   NPA         R L  ++  +++ G H R  + T    +
Sbjct: 307 LDSAGEGICGLNQDGKITFINPAGARMTGYDIRELIMSDLRQITKG-HCR--SQTPGEPH 363

Query: 492 NESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQ------TMLTFV 543
            +S      + I  + +D   R  + G       ++L    +  P  Q       ++TF 
Sbjct: 364 PDSLQP---SPIFATLEDGKVRHVIDGVFWRKDGTILPVEYVSTPMRQEGAIIGAVITFK 420

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     ER   EK         +K+ F+  VS+ELR+PLT+I G   LL +  L S  
Sbjct: 421 DIT-----ERQAMEK---------MKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSP 466

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K  + ++    +   L+ LVNDILDL  + +G + ++   + L DL+ +    +     
Sbjct: 467 EKSQRMLDIAMFNCDRLMRLVNDILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAE 526

Query: 664 ENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  + + VI  + K+   + DR R++Q+ + +LSN++ FS     +   A     D + S
Sbjct: 527 KAGVDLCVIPLEFKV---MVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENDVLIS 583

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           V++ G  IP D  +++F RF  V  +   Q  G GLGL+I  S +  HGG +
Sbjct: 584 VRDRGRGIPPDKIETIFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKI 635


>gi|153806245|ref|ZP_01958913.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
 gi|149130922|gb|EDM22128.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
          Length = 500

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++     + +++ +V 
Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIASTYNELSDEERADFVR 315

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS +S  L+ L++DILDL+ +++  +K  YS   L  ++ ++++  A K     I IK 
Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTYSCCSLKSMMKDIEKEQAVKQLP-EIEIKA 374

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGS 728
           +          D  RL Q+    ++NA  F+ KG         + +D   ++F V++ G 
Sbjct: 375 LLPDDDIYINTDATRLKQVICNFINNARKFTEKGYIHFGFTSHSEKDQLVYLF-VEDTGE 433

Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IP++  K +F+RF   N     ++G GLGLSI ++ +    G +S+ S
Sbjct: 434 GIPQECQKEIFDRFYKVNTF---KQGTGLGLSICKTIVEHLQGSISVES 479


>gi|153835385|ref|ZP_01988052.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
 gi|148868087|gb|EDL67256.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
          Length = 1128

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++NE L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ 
Sbjct: 444 KLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGAIPASQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +     +    IRI   
Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRIINQ 563

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L +  AD QRL Q+   ++ NA+ ++S+G  VI  A   +      V + G  IP 
Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVI-SATVVDDQVRVQVVDTGQGIPA 622

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681


>gi|310818759|ref|YP_003951117.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391831|gb|ADO69290.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 634

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 9/235 (3%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + E  R+  E +   V  V ++LR+PL+ I     LL   KLG  +  +  +V  IS ++
Sbjct: 393 QEEEARQMAEFQEKLVAIVGHDLRNPLSAIQVSAALL-ARKLGEPSLLRKLHV--ISTAA 449

Query: 618 TILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               ++  D+LDL      G + +      L+ ++ EV +       E +IR+ +    +
Sbjct: 450 DRAGHITRDLLDLTQARLGGGIPVRPQPCELHAVIREVAEEHHAAHPERDIRLDLAGTAE 509

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
               V D +RL Q+ + +LSNA+++S  G+ V + + R   + +    N G  IPE+M  
Sbjct: 510 ---GVWDPERLAQVVANLLSNALNYSPPGTPVEISSQRHEEELVLRFHNQGPPIPEEMRS 566

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  F     R  G R G+GLGL I E  ++ HGGH+ + S++   TT    +P
Sbjct: 567 RLFAPFKRRPERSAGPRDGLGLGLYIAERIVSAHGGHIGVDSTELQGTTFFVHLP 621


>gi|237798963|ref|ZP_04587424.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806199|ref|ZP_04592903.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021817|gb|EGI01874.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027312|gb|EGI07367.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 917

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 859

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 2/250 (0%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + ++T+  R E  L +  EA   A   K  F+  +S+ELR+PL+ I+G  + L +S+   
Sbjct: 165 YADITERKRMEIELQKAKEAADAAACAKGEFLTVMSHELRTPLSLILGPLESLLSSRDEP 224

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +    +E I  S   L  LV+D+LD   ++AG M++++  + + +L++++ +     
Sbjct: 225 LSPRVRADLELIQRSGRRLRRLVDDVLDHQKIEAGKMQIDWEAVDVGELVSDMVEEARPA 284

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                + + +  D +L    ADR++L +I   +L NA+ F+  G  V +     +G F  
Sbjct: 285 AARGGLDLSIRVDPELRRVPADRRKLEKIALNLLGNALKFTPPGGRVTVDLRALDGLFEL 344

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  IP D    +F RF  +  +   +  G G+GLS+ +    L GG V + S   
Sbjct: 345 SVEDTGPGIPADRRHLLFQRFQQIDASATRKHEGTGIGLSLAKELTELMGGAVGVESEPG 404

Query: 780 GVTTINCRIP 789
             +    R+P
Sbjct: 405 VGSRFFVRLP 414



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 9/132 (6%)

Query: 668 RIKVISDG---KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDF---I 720
           R+ + +DG    L   + +  +L      ++ NA+D S  GS V+++A  R  GD     
Sbjct: 725 RVHLETDGNSSALPEVLVNASQLESALLNVIGNALDASPHGSAVVVEARPRPRGDIHGVE 784

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             V ++G  I  +    +F  F +    GQ  G GLGLS+   FI  H G + I S+   
Sbjct: 785 IDVHDHGCGIRAEDLSRIFEPFFTTKPPGQ--GTGLGLSLTHRFIEEHQGSIRIESAPGE 842

Query: 781 VTTINCRIPSKE 792
            TT+   +P+++
Sbjct: 843 GTTVRMWLPARQ 854


>gi|163795290|ref|ZP_02189257.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159179276|gb|EDP63807.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 377

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 148/339 (43%), Gaps = 11/339 (3%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGW-DLFAA 502
            VA++  D R+   +P + +++  E+  L PG   R        +++  +S G+ DL A 
Sbjct: 23  AVAIYDRDDRVVAVSPYYETMFPEED--LKPGLTYREALTRFGLHHDRVQSLGYSDLEAY 80

Query: 503 IITSFDDERKSL-QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           I       R    Q   +L +   +E   +PLPN      + +++    AE  +    E+
Sbjct: 81  IDAEVQRHRTPYTQQVYQLKNGRWIEARKVPLPNGGIAGLWRDISAQREAELEMRRSKES 140

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTIL 620
              A   K  F+  +S+ELR+PL  +IGF +LL+ S  G++  +   +Y   I  S   L
Sbjct: 141 TELASRAKADFLALMSHELRTPLNAVIGFAELLERSG-GTMQPETLGEYAGLIRTSGEQL 199

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L ++NDILDL  +      L    I L  +     +          + +       L   
Sbjct: 200 LRMINDILDLTRLGGNEAALPMDLIRLESITATCLRITEPFARPRQVTLVDAVPTDLPPL 259

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVF 739
            A+   L ++   +LSNA+  S  GSTV L    R N      + ++G  + E+   +  
Sbjct: 260 RAEVASLRRMIIHLLSNAVKVSPAGSTVTLTVERRPNNALSVIIVDDGPGMSEEQIAAAV 319

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F  N     RR  G GLGL +V++ I LHGG + + S
Sbjct: 320 QPFSQNDEVRSRRLTGAGLGLPLVKTLIELHGGRLVLDS 358


>gi|119490652|ref|ZP_01623057.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119453817|gb|EAW34974.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1064

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 206/456 (45%), Gaps = 69/456 (15%)

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSNPR 409
           +DEL E   S N++  QL         F+  K SE+    +   LP G ++H I      
Sbjct: 416 SDELGELAHSFNQMAHQLQAS------FAELKDSESRLFQYLEALPVGVSVHDIT----- 464

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSN--PAFRSL 466
            G ++     + Q+       TL+  Q +    LS+   ++    G++  +N  PA R+L
Sbjct: 465 -GKLYYANQTSRQL---LNIQTLLDAQAK---ELSQAYQIYQAGTGKLYPTNALPAVRAL 517

Query: 467 ----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLEL 520
                  ++  +     I  I    +  YNE  G  ++A  I +F D  +RK  +   +L
Sbjct: 518 KGEIVYIDDLEIHYPNKILPIEVWATPIYNEQ-GQIIYA--IAAFQDITQRKQAE---QL 571

Query: 521 LSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           L+D    LE  +                   +  + L E  E    A+  K++F+ ++S+
Sbjct: 572 LADYNCTLEAQV------------------TQRTQELAEAKEKAEVANVAKSAFIANMSH 613

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  I+GF+ ++  S   +L ++  + V+ I+ S   LL L+N+ILD++ ++AG +
Sbjct: 614 ELRTPLNAILGFSQIMNRS--SNLPNEHQESVKIINRSGEYLLTLINNILDVSKIEAGKI 671

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
            LN     L  LL+E+++    K     +++    +  +  ++  D  +L ++   +LSN
Sbjct: 672 TLNSKNFYLVRLLDEIEELFKLKSINQGLQLYFEREDNIPQYIQTDELKLREVLINLLSN 731

Query: 698 AMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           AM F+  G   +    R   +         F V++ G  I  +    +F  F S    G+
Sbjct: 732 AMKFTQVGGIYLRVKTRSTPETEPSTQTLYFEVEDTGVGILSEELSQLFEAF-SQTQSGK 790

Query: 751 --RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             + G GLGL+I + F+ L GG +++ S   GV TI
Sbjct: 791 QAQEGTGLGLAISQKFVELMGGEINVKSQ-AGVGTI 825


>gi|330986722|gb|EGH84825.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 917

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|309792572|ref|ZP_07687034.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308225386|gb|EFO79152.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 720

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 129/252 (51%), Gaps = 7/252 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +T+ + +  A       L++A++ K++F+  +S+ELR+PL  I+GFT  L     G L 
Sbjct: 472 TLTNQIASAYARARLTRDLQRANQAKSAFLASMSHELRTPLNAILGFTGTLLMRLPGPLT 531

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q + +  I  S+  LL L+NDILDLA +++G ++L  +T++  ++L+EV   +     
Sbjct: 532 ESQERQLSTIKRSAQHLLALINDILDLARIESGRLELRLTTVLAQEVLHEVIAELRPLAE 591

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS 722
           +  ++ ++ +         D + L QI   +++NA+ F+  G   V L+   +    +F 
Sbjct: 592 QRGLQFQMDAPESPLPLTTDLRILRQILINLVNNAIKFTDVGEVHVSLRC--ETQALLFV 649

Query: 723 VKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           V++ G  I PED  + +F  F  +++     R G GLGL +        GG V++ S   
Sbjct: 650 VRDTGIGIKPEDQAR-LFADFGRINSVDVHTREGTGLGLRLAYRLAEALGGTVTLQSEYG 708

Query: 780 GVTTINCRIPSK 791
             +T   R+P +
Sbjct: 709 VGSTFTLRLPYR 720


>gi|260170293|ref|ZP_05756705.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1464

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 927  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 985  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144


>gi|255037080|ref|YP_003087701.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949836|gb|ACT94536.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 667

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 125/251 (49%), Gaps = 14/251 (5%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + + T +++T    AE+ L +  +   +A  IK+ F+  +S+E+R+P+  IIGFTDLL +
Sbjct: 255 EVLGTAIDITARKIAEKELIQAKKDAEEATRIKSDFLSTMSHEIRTPMNAIIGFTDLLLS 314

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S       ++ QY+  I  S+  LL ++NDILD + ++AG   L      L + L  + +
Sbjct: 315 S---GFTGQEQQYLNTIKYSADNLLVILNDILDFSKIEAGKFGLENFEFDLREKLGYLMK 371

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
           +   +  E +I+        +   V  D  RL QI   ++ NA+ F+ +G +V +     
Sbjct: 372 TFEIRAKEKSIQFTFQCSTDVPQIVMGDPYRLNQIMVNLIGNAIKFTEEGGSVEVSVHLD 431

Query: 714 RDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFIN 766
           +D+GD I     V ++G  I ED    +F+ F S AH         G GLGLSI      
Sbjct: 432 KDHGDSIDLKIDVSDSGIGISEDKLSVIFDSF-SQAHNNNAVRNFGGTGLGLSITRKITE 490

Query: 767 LHGGHVSISSS 777
           L  G +S  S+
Sbjct: 491 LMNGSISARST 501


>gi|156975687|ref|YP_001446594.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116]
 gi|156527281|gb|ABU72367.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116]
          Length = 1128

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++NE L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ 
Sbjct: 444 KLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGAIPASQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +     +    IRI   
Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRIINQ 563

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L +  AD QRL Q+   ++ NA+ ++S+G  VI  A   +      V + G  IP 
Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVI-SATVVDDQVRVQVVDTGQGIPA 622

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681


>gi|94264347|ref|ZP_01288139.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
 gi|93455241|gb|EAT05454.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
          Length = 552

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 148/309 (47%), Gaps = 26/309 (8%)

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           AT  ++Y+ S   D   A++ +  DE + L  +   ++D + +Y        QT      
Sbjct: 242 ATSMQHYSRSGHRD--DALVLATGDELQELSQSFADMADRLSDYHYSLEDRIQTA----- 294

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-----SKL 599
             D   + + L E N+ L  A+  K+ F+   S+ELR+PLT+I G  + + T     S  
Sbjct: 295 TRDLAASNQQLLEANQLLAAANRRKSDFIARASHELRTPLTSIKGGMEYIDTRLRHDSPA 354

Query: 600 GSLNSKQS-----QYVEYISASSTILLNLVNDILDLATVDAGIMK-LNYSTIVLNDLLNE 653
            ++N  +S     +++E I  ++  L+ +VN +LD+  ++ G M  LN+ST    DL   
Sbjct: 355 TAVNQPKSHDELLEFIELIRNNTDRLIRMVNIMLDIERIEMGTMATLNWSTC---DLALV 411

Query: 654 VKQSIATKMH-ENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++S+A   H      + +++ G K     AD  RL Q+ + +L+NA+ F+   S + + 
Sbjct: 412 IRESVAEMAHTAAGKEVPLLAHGPKPLPIRADEDRLRQVLTNLLANAIKFAPAQSEINIH 471

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              +    +  + + G  +     + +F +F      G R G GLGL+I  S I  HGG 
Sbjct: 472 FKAEGAHAVVEISDQGPGVAAAEEEKIFEKFYK---LGDREGSGLGLAICRSIIEAHGGT 528

Query: 772 VSISSSDEG 780
           + +  + EG
Sbjct: 529 IGVRPNPEG 537


>gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 975

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 125/238 (52%), Gaps = 6/238 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++T+    E  L +      +A   K SF+ ++S+E+R+P+ +IIGF+DLL  +    
Sbjct: 377 LVDITERKEYEEKLEQAKFKAEEAAHAKQSFMANMSHEIRTPMNSIIGFSDLLMDT---P 433

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q +++  ++ ++  LL L+N+ILD A ++ G + +      L  +++ +  +   +
Sbjct: 434 LDQEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFSLKPVIDSIISTFWLE 493

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + ++ +K+ I +    ++  D  RL Q+ + ++ NA+ F+ +GS  +      N    
Sbjct: 494 AKKKDLELKLHIKESVSSTYYGDPDRLRQVLTNLIGNAIKFTEEGSVTVTVGMTQNQHLF 553

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I +D  ++VF  F        RR  G GLG +I +  + L GG +++ S
Sbjct: 554 FEVQDTGIGIAKDRIQAVFQPFEQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVS 611


>gi|312211920|emb|CBX92004.1| hypothetical protein [Leptosphaeria maculans]
          Length = 934

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 132/253 (52%), Gaps = 24/253 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  K +A   A  +K+ F+ ++S+E+R+P++ IIG ++ L  S  G LN +Q ++   
Sbjct: 501 KQLIAKEKAALDASNLKSRFLANMSHEIRTPISGIIGLSEHL--SDCG-LNEEQLEFSNS 557

Query: 613 ISASSTILLNLVNDILDLATVDAGIM---KLNYSTI-VLNDLLNEVKQSIATKMHENNIR 668
           I  S+  LL LVND+LD + +++G M    + +S + +++D L      I  ++      
Sbjct: 558 IEESAKFLLTLVNDVLDFSKMESGHMDVESIPFSPLKIISDTL------IPLRLQAKERG 611

Query: 669 IKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIF 721
           + +  D KL     F+ D  RL QI + ++ N++ F+ +G   +   + D  D      F
Sbjct: 612 LALTFDCKLEPGAMFLGDPWRLRQILTNLIGNSLKFTQQGQIDLSVRSADLKDSTMVLHF 671

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778
           +V + G  I E++   +F  F S A     R   G GLGL+I +  + L GG +S++S+ 
Sbjct: 672 AVHDTGMGITEEVLDGLFTPF-SQADGSTARLYGGTGLGLAICKQLVELMGGQISLASTW 730

Query: 779 EGVTTINCRIPSK 791
              TT  C+IP K
Sbjct: 731 GQGTTATCKIPFK 743


>gi|311104253|ref|YP_003977106.1| His Kinase A phosphoacceptor domain-containing protein 4
           [Achromobacter xylosoxidans A8]
 gi|310758942|gb|ADP14391.1| His Kinase A phosphoacceptor domain protein 4 [Achromobacter
           xylosoxidans A8]
          Length = 964

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 14/234 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L    +A  +A++ K  F   +S+E+R+PL  I+G  +LL    L  + ++Q QY+ 
Sbjct: 470 ERTLRNAKQAADQANDAKTLFFATISHEIRTPLYGILGTLELLA---LTPMTTQQQQYLH 526

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  SS+ LL  +ND LDL+ ++AG   L  S     ++L  V  + A +     ++I  
Sbjct: 527 TMQQSSSTLLRTINDTLDLSRMEAGHEDLILSEFSPTEMLEGVVANYAARAQGKGLQIFA 586

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKN 725
           I+   + + V  D  RL QI + ++SN++ F+  G  V+L+A     A       F V +
Sbjct: 587 IAGTGMPAMVRGDPTRLQQILNNLVSNSVKFTEAGR-VVLRATTSAVAAGKATLRFQVAD 645

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            G  I  +    +F  +   AH GQ +   G GLGL+I    ++L GG +S+ S
Sbjct: 646 TGVGIRAESQTQLFEPYF-RAHSGQVQDAAGTGLGLAISRRLVDLMGGSLSLVS 698


>gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
 gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
          Length = 1476

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 939  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 996

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 997  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1057 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1116

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1156


>gi|237746502|ref|ZP_04576982.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377853|gb|EEO27944.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 718

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 12/236 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A R L +  E   +A+  +  F+  +S+E+R+PL  I+G  +L++         K  +Y
Sbjct: 325 QANRQLRQAVEQANQANAARRDFLARISHEIRTPLNGIVGMIELVRLEY--DAKEKCLEY 382

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +   + S+  LL L++D+LD++ +++G + L+     +  L  EV+    T   +  + I
Sbjct: 383 LRKATVSANYLLGLLSDVLDISRIESGKLTLHNDLADMRVLREEVEALAGTLAEKRQLTI 442

Query: 670 KVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFI-FS 722
           ++   G K   FV D  RL Q+   ++SNA+ ++  G  +++      A  D+   +   
Sbjct: 443 RIDDSGMKHRYFVTDYLRLKQVLVNLVSNAIKYTGDGGHIVVNFSEEAATEDSRSLVTLQ 502

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           V+++G  I  D  K +F  F      G++R  GVGLGLSIV   + L GGH+++ S
Sbjct: 503 VQDDGQGIAPDKLKEIFEPF-EQGGGGKKRENGVGLGLSIVTGTVTLMGGHINVES 557


>gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1157

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 12/224 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K+ F+  +S+E+R+PL  +IG+ DLL       L     +  + I  +   LL +
Sbjct: 666 RASAAKSEFLAAMSHEIRTPLNGVIGYADLLLDGT--DLGPAARRNADRIRTAGAALLTV 723

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           VND+LD + V+AG +++      +  L++     +        + + V     L  ++  
Sbjct: 724 VNDVLDFSKVEAGQIEIVPRPFAVEALIDNAVSIVRPSAERKGLALTVALGPGLPDWIEG 783

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGD--FIFSVKNNGSSIPEDMC 735
           D  RL QI   +L+NAM F++ G       V   AA   G     F+V++ G  IP D C
Sbjct: 784 DEDRLRQILLNLLNNAMKFTASGGIDLSVRVSPDAASATGGTRLRFAVRDTGIGIPTDKC 843

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +F RF  V  +   +  G GLGL+I +S + L GG + ++S+
Sbjct: 844 DRLFRRFSQVDGSISREYGGTGLGLAISKSLVTLMGGTIGVAST 887


>gi|94263458|ref|ZP_01287271.1| PAS [delta proteobacterium MLMS-1]
 gi|93456188|gb|EAT06327.1| PAS [delta proteobacterium MLMS-1]
          Length = 825

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 12/219 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  IIG ++LL  +   +L+ +  +Y   I  S   LL ++NDIL
Sbjct: 302 KSEFLANMSHEIRTPLNGIIGLSELLAAAP-ENLDPEHRRYAGLIHDSGQALLTIINDIL 360

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           D + ++AG ++L      L+D +    +         +I +K+    +L G  + D QRL
Sbjct: 361 DFSKIEAGHLELAEQQFNLHDAVTTTLELAKATAGAKDIPLKLEYSPELPGELLGDPQRL 420

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSVKNNGSSIPEDMCKSVF 739
            Q+   +LSNA+ F+  G  V+  AA D             F+VK+ G  I  +  + +F
Sbjct: 421 RQVLLNLLSNALKFTESGEIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLEQIF 480

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F     +    + G GLGL+IV   +   GG + + S
Sbjct: 481 EAFNQADTSSTRHQAGTGLGLAIVRRLVTAMGGTIKVES 519


>gi|281611|pir||B41863 two-component regulatory protein lemA - Pseudomonas syringae
          Length = 929

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 287 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 342

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 343 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 402

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 403 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 460

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 461 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 509


>gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 920

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 21/249 (8%)

Query: 544 NVTDSVRAERAL--------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-L 594
           ++T++V  E+ L        + K+EA ++A+  K+ F+ ++S+E+R+P+  IIG + L L
Sbjct: 128 DITNTVSREQMLRNQARELHSAKDEA-QQANRAKSDFLANMSHEIRTPMNAIIGMSHLAL 186

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           KT     LN+KQ  YV  I  S+ +LL ++NDILD + ++AG + +      L+D+L+ V
Sbjct: 187 KTD----LNAKQRDYVGKIHDSALLLLGIINDILDFSKIEAGKLSMESVAFYLDDVLSNV 242

Query: 655 KQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712
              ++ K+ E  + I    D G     V D  RL QI   +++NA+ F+ +G+ V+ + A
Sbjct: 243 ANLVSMKVEEKGLEISFQVDRGVPLHLVGDPLRLGQILINLVNNAVKFTEQGNIVVAITA 302

Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
             D    +   F V+++G  + +     +F  F        RR  G GLGLSI +  + +
Sbjct: 303 ELDCESHVVVQFQVRDSGIGMTKQQIDRLFQAFSQADSSTTRRYGGSGLGLSICKRLVGM 362

Query: 768 HGGHVSISS 776
             G + + S
Sbjct: 363 MDGDIWVES 371


>gi|320323404|gb|EFW79492.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. glycinea str. B076]
          Length = 917

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|237716456|ref|ZP_04546937.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1464

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 927  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 985  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144


>gi|187926379|ref|YP_001892724.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187728133|gb|ACD29297.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 678

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL          K+   +E I
Sbjct: 284 AESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRG--IEAI 341

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+   ++L++D+LD++ + +G + L    + L D+L   +++I     + NI I+   
Sbjct: 342 ERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKNITIET-E 400

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +     D  RL Q+F  +L+NA+ F+ +G  + L         + +V++ G  I   
Sbjct: 401 FLPVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPT 460

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVTTINCRIP 789
               +F+RF        RR  G+GLGL+I +  + LH G ++ +SS  D G TT+   +P
Sbjct: 461 FLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRG-TTMAVSLP 519


>gi|22095687|sp|Q9ZWL6|ETR1_PASED RecName: Full=Ethylene receptor; AltName: Full=PE-ETR1
 gi|4164159|dbj|BAA37136.1| ethylene receptor [Passiflora edulis]
          Length = 738

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 134/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  +I  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSKLEDGSLQLDSGTFNLHAVFREVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI------LKA 712
                  + + +     L  + V D +RL+QI   I+ NAM FS +GS  I      L++
Sbjct: 432 PIASVKKLLLLLNLAPDLPEYAVGDEKRLIQIILNIVGNAMKFSKEGSISITAIVAKLES 491

Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD    DF              VK++G  I P+D+ K +F +F      G R   G GL
Sbjct: 492 LRDARVPDFFPTPSENHFYLRVQVKDSGVGINPQDIPK-LFIKFAQTQTTGARNSSGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I   F+NL  GH+ + S   G
Sbjct: 551 GLAICRRFVNLMDGHIWLESEGLG 574


>gi|330949799|gb|EGH50059.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae Cit 7]
          Length = 917

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|315918654|ref|ZP_07914894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313692529|gb|EFS29364.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1476

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 939  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 996

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 997  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1057 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1116

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1156


>gi|257485912|ref|ZP_05639953.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013483|gb|EGH93539.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 917

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|227891875|ref|ZP_04009680.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
 gi|227866338|gb|EEJ73759.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
          Length = 383

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ ++ E  R  DE+    + +VS+++R+PLT+IIG+  L++  +  S      +Y   
Sbjct: 140 KAMEDEREIERSKDEL----ITNVSHDIRTPLTSIIGYLGLIEDKQYRS-EEDILKYTHT 194

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S  + +LV+D+ +   V      L   ++ LN +L ++  S   + ++  + I  I
Sbjct: 195 AYLKSKQMKSLVDDLFEYTKVRQTDAPLQVQSLELNAMLEQIGASFELEANKKGMEINTI 254

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIP 731
                    AD ++L ++F+ +++NA+ + S G  + L+  + D  +    + N+G  IP
Sbjct: 255 LPDSPVKIEADPEKLARVFNNLITNALKYGSDGKNIYLQLTKVDEKEIEIRISNDGEPIP 314

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E   + VF+RF  V ++   +  G GLGL+I +S I LH G++ +  S++ +T+   R+P
Sbjct: 315 EKSLRQVFDRFYRVESSRSKETGGTGLGLAIAQSIIELHHGYIYV-ESNKNLTSFIMRLP 373

Query: 790 SK 791
            K
Sbjct: 374 IK 375


>gi|254489912|ref|ZP_05103107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224464997|gb|EEF81251.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 690

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 13/242 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +V AE  L  +N   ++ D  K++F+  +S+E+RSPL  ++G T LLK +    L  +Q 
Sbjct: 301 TVYAE-VLLSRNRIAKQTDIAKDAFLASMSHEIRSPLNGVVGMTSLLKETH---LTEEQI 356

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN- 666
           + V+ I  S++ L  ++ DILD + + A  ++L+Y  + L +L          +  E + 
Sbjct: 357 KMVKAIDTSTSHLSAIIGDILDFSKISANKIELDYHAVKLVELFQSCIDITLPQAEEKSQ 416

Query: 667 -IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----F 721
            IR+ V    K   F AD  RL QI   +LSNA+ F+     + L  + D  D +     
Sbjct: 417 YIRLSVSQSLKTVFFKADSTRLKQIVINLLSNAVKFTGMQGNIELAISADTNDQMPVLKI 476

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-D 778
            V +NG  + +D    +F RF        R+  G GLGL+I  +   L GGH++++S  D
Sbjct: 477 MVSDNGIGMSDDQIARLFERFSQADVSTTRKYGGTGLGLAISRNLAELMGGHITVTSKVD 536

Query: 779 EG 780
           +G
Sbjct: 537 KG 538


>gi|217976388|ref|YP_002360535.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217501764|gb|ACK49173.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 795

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 130/246 (52%), Gaps = 13/246 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AER L +K EA   A++ K+ F+ ++S+ELR+PL  IIGF+++++    G L SK  +YV
Sbjct: 521 AERYLEQKAEA-ETANKAKSEFLANMSHELRTPLNAIIGFSEVMQQETFGPLGSK--KYV 577

Query: 611 EY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LL +++D+LD++ +++G ++L  S   L+  ++    ++     E   
Sbjct: 578 DYSNDIKQSGEYLLGVISDVLDMSRLESGRVRLQKSEFELDAAVSGALATVEQIAREKE- 636

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            I ++++   G    ADR    +I + +L NA+ F+ K   V ++A    G     +++ 
Sbjct: 637 -ITLVAEAMPGKRANADRAAFEKILAILLRNAVKFTPKDGRVSVRARFVQGALNVYIEDT 695

Query: 727 GSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I P    +    F +   +   G  +G GLGL+I  S ++LHGG + I S+    T 
Sbjct: 696 GIGIAPAAQARLGRPFEQMGGSLDNGM-KGSGLGLAIARSLVDLHGGSMRIRSTVGSGTI 754

Query: 784 INCRIP 789
           +   +P
Sbjct: 755 VLVHLP 760


>gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
 gi|156111849|gb|EDO13594.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
          Length = 1464

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 927  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 985  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144


>gi|94265547|ref|ZP_01289294.1| PAS [delta proteobacterium MLMS-1]
 gi|93453947|gb|EAT04297.1| PAS [delta proteobacterium MLMS-1]
          Length = 825

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 12/219 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  IIG ++LL  +   +L+ +  +Y   I  S   LL ++NDIL
Sbjct: 302 KSEFLANMSHEIRTPLNGIIGLSELLAAAP-ENLDPEHRRYAGLIHDSGQALLTIINDIL 360

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           D + ++AG ++L      L+D +    +         +I +K+    +L G  + D QRL
Sbjct: 361 DFSKIEAGHLELAERQFNLHDAVTTTLELAKATTGARDIPLKLEYSPELPGELLGDPQRL 420

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSVKNNGSSIPEDMCKSVF 739
            Q+   +LSNA+ F+  G  V+  AA D             F+VK+ G  I  +  + +F
Sbjct: 421 RQVLLNLLSNALKFTESGEIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLEQIF 480

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F     +    + G GLGL+IV   +   GG + + S
Sbjct: 481 EAFNQADTSSTRHQAGTGLGLAIVRRLVTAMGGTIEVES 519


>gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
 gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
          Length = 743

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 140/265 (52%), Gaps = 18/265 (6%)

Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYE 579
           +E +++P+   N +  +T V +   V A +A  E+  A R A E     K  F+  +S+E
Sbjct: 317 METNLVPVLDRNGKVEVT-VAIERDVTAAKAQAEELAAARVAAEEGARAKAEFLATMSHE 375

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++G  +LL  +KL   + +Q QYV+ I +SST LL ++NDIL+L+ +DA  M+
Sbjct: 376 IRTPMNGVVGMAELLSETKL---SIEQRQYVDTIRSSSTALLAIINDILELSRLDARKME 432

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
           L+         + +  + +  +     +R+ + +   +   V  D  RL Q+   +L NA
Sbjct: 433 LHPVNFDPVSCVRDTMRLLKPQAQAKGLRLSLETGADVPPLVYGDDGRLRQVLINLLGNA 492

Query: 699 MDFSSKGS-TVILKA-ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--- 752
           + F+ +G  T+ L++ A+D G  +   V++ G  I  +  + VF RF S A     R   
Sbjct: 493 IKFTERGGVTLRLRSEAQDPGYLLTLEVEDTGIGIAAEKIERVFERF-SQADADTTRLYG 551

Query: 753 GVGLGLSIVESFINLHGGHVSISSS 777
           G GLGL+I    + L GG +++ S+
Sbjct: 552 GTGLGLTISRELVALMGGRITVDST 576


>gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 591

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K ++++  FV +VS+EL++P+T+I GF++ L     G++  KQ+   ++  I   S  
Sbjct: 355 LKKLEQMRKDFVANVSHELKTPITSIKGFSETLLD---GAMEDKQALNDFLSIILKESDR 411

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+ D+LDL+ ++     L+   + L D+L +V   +  K  E  I  K   D K   
Sbjct: 412 LQSLIQDLLDLSKIEKQGFSLSIQQLDLTDVLEDVMAIMKGKAAEKEIVFKYQRDEKPVY 471

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  RL Q+F  I+SNA+ ++     + + AA+     +  +++ G  I       +F
Sbjct: 472 IEGDIHRLKQVFINIISNAISYTPNQGVIYISAAKTGSTVLTEIRDTGIGIEASEIPRIF 531

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGL+IV+  +  H G +S+ S     T+    +P
Sbjct: 532 ERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGSISVKSEVGKGTSFIIELP 583


>gi|302875217|ref|YP_003843850.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307688898|ref|ZP_07631344.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302578074|gb|ADL52086.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 554

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L K + +KN F   +S+ELR+PLT I     L        +     + +  I+ ++  LL
Sbjct: 293 LEKVNFMKNEFFNLISHELRTPLTLIYSSIQLANEIYKTEITENLDKTLTRINKNTGRLL 352

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVN+ILD++ ++AG M LN +   +     ++ +S+    H N   + V+ D       
Sbjct: 353 KLVNNILDISKLEAGYMVLNITNTEIVSNTEDIVESVI--YHSNMKNVNVVFDTYEEEVY 410

Query: 682 --ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D+++  +I   +LSNA+ FS+   ++ +        FI SVK+ G  IP++   ++F
Sbjct: 411 VHVDKEKYERIVLNLLSNAIKFSNDNKSIFVTMDFTENHFILSVKDQGVGIPKEKISTIF 470

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           NRF  V N+      G GLGLS+V+  ++L  G +S+  S+EGV TT   ++P
Sbjct: 471 NRFYQVDNSLTRNAEGTGLGLSLVQKLVDLMDGEISV-DSEEGVGTTFTVKLP 522


>gi|255604796|ref|XP_002538284.1| sensory transduction histidine kinase, putative [Ricinus communis]
 gi|223512911|gb|EEF24099.1| sensory transduction histidine kinase, putative [Ricinus communis]
          Length = 406

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 5/227 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+AL EK E+  +A   K  F+  +S+ELR+PL +I+GF  LL+ +   +L++ Q + + 
Sbjct: 5   EQALIEK-ESAERASLAKTQFLAQMSHELRTPLNSILGFARLLELNLRNTLSAPQLRQLR 63

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL+L+N+ILD++ +++G ++L    + L+ LL ++   +     E  I + +
Sbjct: 64  SIETSGRDLLHLINEILDISRIESGNIRLAIDDVPLHPLLEKIDHQMQPVATEAGIAMHI 123

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI 730
                L    AD QRL QI + +LSNA+ ++     V L A R +GD +   V++ G  +
Sbjct: 124 AMPTDL-IVRADPQRLQQILTNLLSNAVKYNRADGAVHLHAFR-HGDIVRIEVQDEGEGL 181

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                + +F  F    A R    G GLGL IV +      G + + S
Sbjct: 182 SAVQIRELFQPFNRLGAERSHVEGTGLGLVIVRALAEQMHGRLDVRS 228


>gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS]
 gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS]
          Length = 1262

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 127/241 (52%), Gaps = 12/241 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSK 605
           D  R+ R L    E    A++ K+ F+ ++S+E+R+P+  IIG T L LKT     L ++
Sbjct: 531 DLQRSTRKLLTAKEQAELANKAKSDFLANMSHEIRTPMNGIIGLTQLALKTD----LTAE 586

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  Y+ ++ +SS  LL +++DILD + ++AG++++      L+ +L+ +   +  ++ E 
Sbjct: 587 QQDYLTHLESSSQALLVIIDDILDFSKIEAGMLQMELVDFSLDKVLHHLFSVLGMRIEEK 646

Query: 666 NIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI 720
            + + +  D  +  + + D  RL Q+   +++NA+ F+ +G  +I    L          
Sbjct: 647 GLELLLDIDKSVPHYLIGDPLRLGQVLINLVTNAIKFTDQGEILIKIEMLNLTAKQITLC 706

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           FS+K++G  I  +    +F+ F        R+  G GLGL+I +  + + GG++ + S  
Sbjct: 707 FSIKDSGIGISPEAIAQLFDAFTQADTSTTRKFGGTGLGLAICKRLVEMMGGNIWVESQL 766

Query: 779 E 779
           E
Sbjct: 767 E 767


>gi|1346440|sp|P48027|GACS_PSESY RecName: Full=Sensor protein gacS
 gi|151329|gb|AAA25877.1| regulatory protein [Pseudomonas syringae]
          Length = 907

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 265 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 320

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 321 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 380

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 381 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 438

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 439 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 487


>gi|319784578|ref|YP_004144054.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170466|gb|ADV14004.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 577

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K  F+  VS+ELR+PL  IIGF+D+L     G+  + +Q +YV  +  S   LL +V  I
Sbjct: 320 KGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSI 379

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ +++G+           + ++  +  +  +    NI ++       G   AD++ +
Sbjct: 380 LDVSRIESGVYATEPEPFRFAEAVDMCQSMMQLQAQAKNIDLQAQIAPDAGDINADQRAV 439

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   ++SNA+ F+  G  V++ A R      F V++ G  I E+   ++   F+   +
Sbjct: 440 QQMLINLVSNAIKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGIAEEDFANLGKPFMQIQN 499

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              RR  G GLGLS+V+  + LH G +SI S     TT+   +P
Sbjct: 500 DYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 543


>gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 948

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 442 VLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 501

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +   
Sbjct: 502 ---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLP 558

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L   R  GD+
Sbjct: 559 LVVRKQLGLYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVCR-AGDY 616

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           +   V++ G  IP      +F+ F       QR  +G GLGL+I E  +++  G +S+ +
Sbjct: 617 LSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLVSMMDGDISVDT 676

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 677 EPGMGSQFTIRIP 689


>gi|265764068|ref|ZP_06092636.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256676|gb|EEZ28022.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 812

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 131/249 (52%), Gaps = 15/249 (6%)

Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           PN +  L  VN   +V+ E     RA  +K E   +++ +K++F+ ++S+E+R+PL  I+
Sbjct: 552 PNPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 608

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLL T       ++Q ++   I  ++T+LL L +DI+DL+ +DAG  +     + L 
Sbjct: 609 GFSDLLMTV---DDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLY 665

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
                + Q +  K+ E  + +++  D  L + F AD   L Q+ +  +SNA+ F+ +G+ 
Sbjct: 666 QFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHQGTI 724

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            +             V++ G  I  +  ++VF+RF+      Q  G GLGL + +S I  
Sbjct: 725 TVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEK 782

Query: 768 HGGHVSISS 776
            GGH+ + S
Sbjct: 783 MGGHIGVIS 791


>gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 870

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 121/233 (51%), Gaps = 15/233 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E +L +  +A  +A   K+ FV ++S+ELR+P+T ++G  DL   S      ++++ Y+E
Sbjct: 478 EESLRQAKQAAEEASRTKSRFVANMSHELRTPMTGVLGMLDLALQS---CDETERTDYIE 534

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S+  LL ++ND+LDLA V+AG   L+     L   + +    +  ++    + + +
Sbjct: 535 TAQRSARSLLRILNDVLDLAKVEAGKFSLDSKPFSLRTCIGQAVDVVMPEVRRKGLELAL 594

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSV 723
            I D      + D+ RL Q+ + ++ NA+ F+ +GS  I  A R  G       +F FSV
Sbjct: 595 QIEDHLPDHVLGDQVRLRQVLTNLIGNAVKFTERGSVRI--ALRAGGRSPQGPMEFRFSV 652

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           ++ G  IP+D    +F  F  + +++     G GLGL+I +  +   GG +++
Sbjct: 653 RDTGIGIPQDKRHLLFVSFSQLDDSNTRSYGGTGLGLAISKEIVERMGGSIAL 705


>gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
 gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
          Length = 1316

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 122/243 (50%), Gaps = 12/243 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
              TD  +A  AL E  +A   A+  K++F+ ++S+E+R+P+  I+G   L+K +    L
Sbjct: 681 ARTTDLEKANTALEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQTH---L 737

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++KQ+ Y++ +  S+  LLN++NDILD + +++G ++L  +   +   +  V + +  + 
Sbjct: 738 SAKQANYMDKVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAELLGLEA 797

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNG 717
            +  I +    D      FV D  RL Q+   ++ NA+ F+  G   + +          
Sbjct: 798 QQKGIVLNFDLDLNAPERFVGDAMRLRQVLINLVGNAIKFTEHGHIQVTQRLTQWVEAQA 857

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774
           + IF V++ G  I     + +F  F S A     R   G GLGL+I +  + + GG + +
Sbjct: 858 ECIFEVEDTGPGIAPGQQELLFQAF-SQADASTTREFGGTGLGLAISKRLVEMMGGEIGL 916

Query: 775 SSS 777
            S+
Sbjct: 917 QST 919


>gi|167563062|ref|ZP_02355978.1| response regulator/sensor histidine kinase [Burkholderia
           oklahomensis EO147]
          Length = 317

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR P+  ++   +LLK    G    +Q + +
Sbjct: 37  AHRDLKRLQAALRAS---RGSLAT-ASHELRGPVNGMLALVELLKE---GLRTPEQQRLL 89

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +RI+
Sbjct: 90  SLVQDSGQSLARVLNDILDHASIEAGQFAIERTRVDVRELVDSVTAMLAVHAHRKGLRIR 149

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 150 LHVDADVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGSVEIVATIAD 209

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  FV  A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 210 TGIGIAADELRRLFTPFV-RARRGARRTEPGTGLGLAIARRLARLLGGDVTLASEEGRGT 268

Query: 783 TINCRI 788
           T   RI
Sbjct: 269 TATARI 274


>gi|163747910|ref|ZP_02155243.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161378818|gb|EDQ03254.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 641

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ + +KN FV  VS+ELR+PL ++ G   LL          +  + +   S +S  L  
Sbjct: 378 KRLEALKNDFVATVSHELRTPLASVHGALRLLAGVIGEGAPEQVDKLLGMASRNSERLTQ 437

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRIKVISDGKLGSFV 681
           +VND+LD   + AG   +  + +   D ++ V+Q++   +   N   + V+ D      +
Sbjct: 438 VVNDLLDFQKLTAGHFSVEITQV---DAVDIVQQTVVDNEPFANKFSVSVLVDAPEHPVI 494

Query: 682 --ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD QRL Q+ + +LSNA  FS  G+TV +KA  D   F+ SV N G  I  +  K +F
Sbjct: 495 IHADAQRLKQVLTNLLSNAAKFSDCGTTVDVKAGIDEEAFLISVTNRGRGISPEFGKRLF 554

Query: 740 NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F   A      R G GLGL+I +  +   GG +  SS     TT   R+P
Sbjct: 555 EPFSQQAEHLTRDREGTGLGLAISKELVENMGGAIGYSSQINVQTTFWVRLP 606


>gi|108757005|ref|YP_628980.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108460885|gb|ABF86070.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 1967

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 18/244 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A+ AL EK E L    + K+ F+ ++S+ELR+PL +++  +  L  +  G+L S+Q ++
Sbjct: 1251 QAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDNVDGNLTSRQVEF 1310

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I AS   LL L+NDILDL+ +++G M ++   +   DL   V ++      +  +  
Sbjct: 1311 AKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDRTFRQVADKKGLEF 1370

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------- 719
             + + D   G    D +RL Q+   +LSNA  F+  GS V L      G +         
Sbjct: 1371 HIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFTESGS-VSLHIGLAKGGWSPDHAMLSS 1429

Query: 720  -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  F+V + G  IP+D  + +F  F        R+  G GLGLSI      L GG +
Sbjct: 1430 APSVVAFTVADTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREIARLLGGEI 1489

Query: 773  SISS 776
             + S
Sbjct: 1490 RLES 1493


>gi|41016070|dbj|BAD07401.1| histidine kinase [Cochliobolus heterostrophus]
          Length = 359

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 123/232 (53%), Gaps = 17/232 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A + K+ F+ +VS+ELR+PL  +IG ++LLK S    LN +QS Y + I   +  LL++
Sbjct: 15  EAAKAKSLFLANVSHELRTPLNGVIGMSELLKAS---PLNGEQSGYADSIRVCADTLLSI 71

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---F 680
           +ND+LD + ++AG M +    I LN+ + EV +++A    E    +K I   +L      
Sbjct: 72  INDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERG--LKTIEQLELDPEMLV 129

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735
           + D  RL QI   +LSN+  F+ +GS V ++A  D       D   SV + G  IP++  
Sbjct: 130 MGDPVRLHQILMNLLSNSYKFTPRGS-VTVRAVVDQETSEWADVTCSVIDTGIGIPDEQK 188

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
           + +F  F        R   G GLGLSI ++ I N+  G V + S     TT+
Sbjct: 189 QKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTV 240


>gi|329890494|ref|ZP_08268837.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
 gi|328845795|gb|EGF95359.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
          Length = 539

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 120/233 (51%), Gaps = 9/233 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  + E  E    A + K+ F+ ++S+ELR+PLT++IGF+ LL+ S+   L  ++  YVE
Sbjct: 143 EAEVLEAKETAEAAVQAKSEFLANMSHELRTPLTSVIGFSGLLQGSE--HLPPEERIYVE 200

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK- 670
            I+ +S  LL ++NDILD + ++A  ++++        L++     I ++     + ++ 
Sbjct: 201 RIATASEALLGVINDILDYSKLEADAIEMDPEPFDTRALVDGAAAIIESQCSLKGLILRV 260

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNN 726
           V++         D+ RL Q+    LSNA+ F+++G   +    R +   ++    +V + 
Sbjct: 261 VVAADTPARLTGDKGRLRQVMLNFLSNAVKFTARGEVTLTLDGRFDESGLWRMRAAVSDT 320

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           G  IP +    +F+RF        R   G GLGL+I    + L GG + + S+
Sbjct: 321 GIGIPPEKISELFHRFTQADASTTRVYGGTGLGLAISRRLVELMGGEIGVDST 373


>gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 950

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 413 QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 470

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 471 LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 530

Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
           D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 531 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 590

Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 591 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 630


>gi|289628366|ref|ZP_06461320.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 841

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|262404070|ref|ZP_06080625.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           sp. RC586]
 gi|262349102|gb|EEY98240.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           sp. RC586]
          Length = 630

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   Q  LT  N +T+    E+AL +  E   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 67  PINKRQYYLTLFNDITELKETEQALRQSTEQALQAVEARNHFLAVVSHELRTPIAAMLGL 126

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + +S   L L VNDILD + ++A +++L+ ++  L D
Sbjct: 127 MEILAS----RLKSSESQLLLTNAINSAERLKLHVNDILDFSKIEAKLLQLDIASYNLAD 182

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I ++VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 183 ELGPLLRGFEASAQLKQIELEVIWSPSALLLVKFDALRFNQIVTNLLSNAIKFTEQGR-V 241

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           ++K    +   I  +++ G  + +    S+F  FV       RR  G GLG+SIV + I 
Sbjct: 242 VVKVEVASNRLILVIEDTGCGMTQAQIDSIFVPFVQADSTITRRFGGTGLGMSIVANLIE 301

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G +++ S+    T +   +P
Sbjct: 302 LMQGQITVQSALNEGTQVTISLP 324


>gi|218246905|ref|YP_002372276.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|257059966|ref|YP_003137854.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|218167383|gb|ACK66120.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|256590132|gb|ACV01019.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 857

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 126/245 (51%), Gaps = 19/245 (7%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+   L+ A+E KN  +  + +E R+PLT I+GF DLL   +  +LN +Q + +  +  S
Sbjct: 384 ERTAELQAANESKNELLSQIGHEFRTPLTIILGFIDLLDRDR--TLNPQQQENLAIMRRS 441

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL+L  +IL+++ ++     LN +++ L+ L+N V + +  K    N+ +      +
Sbjct: 442 GEYLLSLFAEILEISRLETHKNALNLTSVNLHSLVNSVMEIVGIKAQGKNLPVVAYIAPE 501

Query: 677 LGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSVKNNG 727
           L  ++  D  ++ QI   +L NA+ F+ +G  + L+   ++ + I        F V++ G
Sbjct: 502 LPQYIKIDENKVRQILINLLDNAIKFTDEG-LISLRIISEDPEMISQSSPQITFEVQDTG 560

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS--DEGVTTI 784
           S I  ++   VF  FV    RG   +G GLGLSI +  + L  G +++ S   D+  T I
Sbjct: 561 SGISPEIQAKVFEPFV----RGSTGKGAGLGLSIAQKLVQLMEGEITLVSPVQDQKGTLI 616

Query: 785 NCRIP 789
              +P
Sbjct: 617 RFHLP 621


>gi|86138161|ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
 gi|85825188|gb|EAQ45388.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
          Length = 763

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 132/249 (53%), Gaps = 11/249 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL    E    A++ K+ F+ ++S+E+R+P+  +IG  +L+  +    L+  Q  Y E
Sbjct: 223 EAALERACEDADIANQAKSDFLANMSHEIRTPMNGVIGMAELIMET---DLDEDQQIYAE 279

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS S T LL ++NDIL+ + ++AG ++LN +   L   + +V   ++ + +   + I +
Sbjct: 280 TISKSGTALLTIINDILNFSKIEAGKVELNLAPFNLLTAIEDVVTLLSPRANAKGVEIIL 339

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVK--NNG 727
             D  L  F   D  R+ Q+ + I+ NA+ F+  G   V +   +++ ++  ++K  + G
Sbjct: 340 RYDPNLPEFFEGDVGRVRQVITNIIGNAVKFTDVGYVHVDVSGGKNSENYSLTIKVADTG 399

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG-VTT 783
             IP +  ++VF+ F  V +       G GLGL+I    + L GG V+++S + EG + T
Sbjct: 400 IGIPANRLEAVFSAFEQVDSGATRSFEGTGLGLAISARLLALMGGEVAVASKAGEGSIFT 459

Query: 784 INCRIPSKE 792
           +   +P  E
Sbjct: 460 VQLPLPRAE 468


>gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
            B-, and HSP90-like ATPase./Response regulator receiver
            domain./Two component regulator propeller./Bacterial
            regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
            domain. [Bacteroides xylanisolvens XB1A]
          Length = 1465

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 927  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 985  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144


>gi|262192282|ref|ZP_06050438.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae CT
           5369-93]
 gi|262031832|gb|EEY50414.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae CT
           5369-93]
          Length = 785

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|229524361|ref|ZP_04413766.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           bv. albensis VL426]
 gi|229337942|gb|EEO02959.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           bv. albensis VL426]
          Length = 785

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|88603878|ref|YP_504056.1| histidine kinase [Methanospirillum hungatei JF-1]
 gi|88189340|gb|ABD42337.1| histidine kinase [Methanospirillum hungatei JF-1]
          Length = 397

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 172/359 (47%), Gaps = 26/359 (7%)

Query: 438 ETIDHLSEGVAVF----GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +T+D++     VF     P G I+ +N   R+L   +      G HIR I  + S  +N+
Sbjct: 17  KTLDYILHKSQVFLLILSPSGEIRYANTYARTLLTQDPT----GVHIREILLSGS--WND 70

Query: 494 SDGWDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           S   D  +  +T      + DD  ++L  T+   +D+   Y I    +++ +        
Sbjct: 71  SLLADWTSGDVTPIMNIRTHDDLPRTLYITV-YPTDA--GYLIFGHSDSEELHRLSKEVL 127

Query: 548 SVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +  E     R L  +N  L + + +KN F+   +++LRSPL+ I+ +T+ L      +L
Sbjct: 128 GLNRELGILTRELQVRNRELAELNRMKNQFLGMAAHDLRSPLSLILNYTEFLMEDLQDNL 187

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +  ++++ I  S+  +  ++ D LD++ +++G + LN   I    L+ E+ +      
Sbjct: 188 SDEHREFLQTIITSALDMKQVIADFLDVSIIESGHLMLNPGPISFETLMQELLRKTGLSA 247

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +IRI   ++G++ +   D  ++ Q+ + ++ NA+++S     + +   R +   +F 
Sbjct: 248 ERRSIRITWKTEGEMPTLYVDVGKIGQVLANLVHNAIEYSPDQGEIEILGQRTDTGIVFM 307

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           V+++GS I ++    +F+ F   S   +   R +GLGL I    +  HGG + + S+ +
Sbjct: 308 VQDHGSGISKEKQDKLFSEFSGTSMKKKNGERSIGLGLIISRKIVEAHGGSMFVESTPD 366


>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 765

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 14/239 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L ++ EA  +A   K+ F+  +S+E+R+P+  +IG  ++L+ +   +L+  Q  Y+  
Sbjct: 240 RRLVQEAEAANRA---KSQFIATMSHEIRTPMNGVIGMVEMLRDT---TLDDSQRHYLGI 293

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671
           I  S   L+N++NDILD + ++AG M L +    L +LL +  Q  +    + NI  I  
Sbjct: 294 IERSGDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICS 353

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
           IS       + D  RL Q+   ++ NA  F+S+G   +     +  D       FSV+++
Sbjct: 354 ISPNTPKQLMGDPTRLKQVLVNLIGNAFKFTSEGHIYVEARQVNASDADLPMIHFSVEDS 413

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I  +  + +F+ F        R+  G GLGL+I +    + GG + + S ++  +T
Sbjct: 414 GIGIESNQQEKLFDAFCQADGSTTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKAGST 472


>gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1888

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 123/237 (51%), Gaps = 12/237 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R  +AL E       A+  K+ F+ ++S+ELR+PL  I+GFT ++   +  +L+++  Q 
Sbjct: 1392 RQSQALQEAVITADAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDR--ALSTEHQQN 1449

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +  I+ +   LLNL+NDIL+++ ++AG + LN ++  L  LL  +++ +  +     + +
Sbjct: 1450 LAIINRAGEHLLNLINDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGLEL 1509

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------- 720
                   L  ++ AD  +L Q+   +L NA+ F+  G  ++  A  + G+ I        
Sbjct: 1510 NFEYTSYLPQYIQADESKLRQVLLNLLGNAIKFTDTGRVMLRVAMENMGEKILPHPPHLF 1569

Query: 721  FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F V + G  I       +F  F  +   R  ++G GLGL+I   ++ L GG +S++S
Sbjct: 1570 FEVTDTGRGIAPQEINLLFEAFGQTETGRKSQQGTGLGLAISRKYVELMGGDISVTS 1626


>gi|330980175|gb|EGH78357.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 837

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 195 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 250

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 251 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 310

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 311 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 368

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 369 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 417


>gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 1476

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 939  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 996

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 997  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1057 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1116

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1117 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1156


>gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1385

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 121/244 (49%), Gaps = 4/244 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R+  A   + E L + D  K +F  ++S+E R+PLT I+G  + L+T +L   +++  
Sbjct: 333 SARSYEAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRT-QLAGADARVR 391

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +E I  +   L  LVN +LD + ++AG M+  Y  + L+ +  ++     + + +  +
Sbjct: 392 EELEIIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQVTADLASVFRSAVDKAGL 451

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             ++           DR    ++   +LSNA+ F+  GS  +   ARD    + +V + G
Sbjct: 452 DFRIDCPPLQEQVYVDRGMWEKVILNLLSNALKFTFDGSIGVTVRARDE-HAVITVTDTG 510

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +  +    +F RF  + NA      G G+GL++V+  + LHGG ++  S++   T   
Sbjct: 511 IGVSREEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGEGTRFT 570

Query: 786 CRIP 789
            R+P
Sbjct: 571 IRLP 574


>gi|114776750|ref|ZP_01451793.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
           ferrooxydans PV-1]
 gi|114552836|gb|EAU55267.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
           ferrooxydans PV-1]
          Length = 841

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A   A+  K+ F+ ++S+ELR+PL  IIG +DLL ++   SL+++Q ++   I  S+  
Sbjct: 189 DAAEAANRAKSQFMANMSHELRTPLNGIIGMSDLLYST---SLSNEQKRFTFVIKESAYH 245

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            L+L+  ILD+A ++AG ++L +    L+ LL+        +  E  IRI +  D ++  
Sbjct: 246 QLSLIERILDMAKLEAGKLELLHEPFDLHQLLHGTVALFEGQAKEKAIRIALRYDPEIPF 305

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDM 734
           + + D + + QI   I+ NA+ F+  GS  +   A +    N    F+V + G  + ED+
Sbjct: 306 ALIGDPKHIKQILLNIVGNAVKFTEHGSVTLKVEASEVTEKNVVLQFTVTDTGIGMSEDV 365

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F +F        RR  G GLG +I ++   L GG +S+ S     TT    +P
Sbjct: 366 QGRIFEQFTQADASITRRFGGTGLGTTIAKNLTELMGGSISLKSRAGAGTTFTINLP 422


>gi|42781026|ref|NP_978273.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
 gi|42736947|gb|AAS40881.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
          Length = 355

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 133/242 (54%), Gaps = 13/242 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 170

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+ S + +  L+ ++      ++ + ++  
Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 230

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 231 CIKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQVSKRDMNVEIEIKNFGQC 289

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           IP++    VF +F    +RG++       G G+GL+I  S   LH G +++ S++ E V 
Sbjct: 290 IPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVF 345

Query: 783 TI 784
           TI
Sbjct: 346 TI 347


>gi|78222916|ref|YP_384663.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
 gi|78194171|gb|ABB31938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
          Length = 1313

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 175/398 (43%), Gaps = 56/398 (14%)

Query: 414  WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP--------AFRS 465
            W    L   +  + + N  +++    ++H    + +   DGRI+  NP        AF  
Sbjct: 664  WNAVGLLRDITEQKRINASLRMLSAAVEHSPVSIIITDRDGRIEYVNPKSCQMTGYAFEE 723

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS------FDDERKSLQGTLE 519
            L       +   TH          +Y      +L+  I++       F + RK   G+L 
Sbjct: 724  LRGQNPRIMKGPTH-------PPEFYK-----NLWETILSGREWYGEFHNRRKD--GSLV 769

Query: 520  LLSDSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEK-----------NEALRKADE 567
             +       SI P+ + +  +T FV V + +  ++ L E+            +   +A+ 
Sbjct: 770  WVM-----ASISPIYDEKGEITHFVGVREEIEKQKKLQEELANIAQLEKVARDRAEQANR 824

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K+ F+  +S+E+R+PL  IIG +DLL  ++L   + +QS Y+  + ++   L  L+NDI
Sbjct: 825  AKSEFLAGMSHEIRTPLNAIIGMSDLLAETRL---DGEQSGYLSVVHSAGETLQGLINDI 881

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
            LDL+ ++AG+++L+     L D + ++    + K     +     +        + D  R
Sbjct: 882  LDLSKIEAGMLQLDSVPFSLRDCIRQLTDITSVKASSKGVTYSFSVKSAVPDWLMGDSLR 941

Query: 687  LLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI--FSVKNNGSSIPEDMCKSVFNR 741
            L Q+   ++ NA+ F+  G +V+L+     + + + +  FSV + G  I  +   ++F  
Sbjct: 942  LRQVLINLVGNAVKFTDSGGSVLLEVEPVQQSDAEVLIRFSVADTGIGIAPEKLDTIFES 1001

Query: 742  FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F        RR  G GLGL+I      + GG + + S+
Sbjct: 1002 FSQADSSTTRRYGGTGLGLAISRHLAGMMGGEIGVEST 1039


>gi|90423379|ref|YP_531749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90105393|gb|ABD87430.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 923

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 130/281 (46%), Gaps = 27/281 (9%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T + DE  ++ G LE L    L+        AQ +   +     V  ERA    NE  R 
Sbjct: 370 TGYPDEMGAMAGALEELRVGALK--------AQHLQRLLEKAQEVEIERA----NEVSRA 417

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
               K  F+  +S+E+R+PL  I+G   LL  S L   +++Q Q+++ ++ S ++LL ++
Sbjct: 418 ----KTDFLATMSHEIRTPLNGILGMAQLLDDSPL---SAQQRQWLDAVAQSGSLLLAIL 470

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDL+ ++AG M+L       ++LL  +  ++  +     +             + D 
Sbjct: 471 NDILDLSKIEAGRMELESIAFSPDELLRTIAAAMTPQAAGKGLAFLTEYPALPARLIGDP 530

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            ++ Q+   ++ NA+ F+  G  V+       +   D G   F V + G  I       V
Sbjct: 531 AKISQVLLNLVGNAVKFTHSGEVVLSVNWAPDEQRPDRGRMEFRVTDTGIGIARQAVPHV 590

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F+ F  +     RR  G GLGL+I +  I+  GG +++ S+
Sbjct: 591 FDPFSQSDSSITRRFGGSGLGLAICKRIIDAMGGKITVEST 631


>gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1166

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 128/246 (52%), Gaps = 13/246 (5%)

Query: 554 ALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AL E+ +AL+ A++    K+ F+ ++S+E+R+PL  II  + L+  +    L SKQS Y+
Sbjct: 418 ALEEREKALQCAEQANLAKSDFLANMSHEIRTPLNAIINLSYLILQT---PLTSKQSNYL 474

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-SIATKMHENNIRI 669
           E I ++   LL ++NDILD + ++AG + L++    L+D+++ V   +IA K  ++   +
Sbjct: 475 EKIESAGRTLLGVINDILDYSKIEAGHLVLDHVAFQLDDVISNVANIAIARKEDKDLDLL 534

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
             ++       + D  RL  +   + +NA+ F+  G  VI   A+   +      FSV++
Sbjct: 535 YHVTPSTPTQMMGDPMRLGAVLINLTNNAIKFTEHGEVVIRVDAKQQREQHYLLHFSVQD 594

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +  K +F  F        RR  G GLGL+I +  + L GG +S+ S     TT
Sbjct: 595 TGIGISAEQQKRLFQSFSQADSSISRRYGGTGLGLAISKKLVELMGGTLSLQSVVGQGTT 654

Query: 784 INCRIP 789
               IP
Sbjct: 655 FEFTIP 660


>gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
 gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
          Length = 776

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 131/252 (51%), Gaps = 12/252 (4%)

Query: 535 NAQTMLTFVNVTDS-VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             + +L   ++TD  V  E    E+ EA+R   + K+ F+ ++S+E+R+PL  I+G T+L
Sbjct: 96  GGEVLLGAFDITDQKVTEEHLRKEREEAIRSV-QSKSRFLANMSHEIRTPLHTILGMTEL 154

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ ++   L+ +Q  YV+ I  S   LL L+NDILD + ++AG + +      L +++ +
Sbjct: 155 LEDTR---LDEEQRDYVQQIRFSGEALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQ 211

Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VI 709
               ++ + H+ ++ + V I +        D  R+ QI   + +NA+ F+ KG     V 
Sbjct: 212 AVGMVSLQAHKKHLEVVVDIGEEVPRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQ 271

Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           L   R    ++ F+V++ G  IPE+    +F  F        RR  G GLGL+I +S + 
Sbjct: 272 LVQERKGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVE 331

Query: 767 LHGGHVSISSSD 778
           +  G + + S +
Sbjct: 332 MMKGEIGVRSKE 343


>gi|254512446|ref|ZP_05124513.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
 gi|221536157|gb|EEE39145.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
          Length = 748

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 125/242 (51%), Gaps = 11/242 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+T +VR E  L    E    A+  K++F+ ++S+E+R+P+  I+G T+LL  +    L
Sbjct: 201 LNITATVRHEAELNAARERAEAANRAKSAFLANMSHEIRTPMNGIVGMTELLTET---PL 257

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q  Y+  I  S   LL ++ND+LD + ++A  + L+     L   + EV   +   +
Sbjct: 258 NEEQRLYISTIRNSGEALLVIINDVLDYSKIEADKLTLHPEQFDLERCILEVAMLLQPSV 317

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDN 716
            +  + + V  D  L + FV D  R+ QI + ++ NA+ F+++G      T +  A+  +
Sbjct: 318 RDKGLTLLVDYDLFLPTLFVGDPGRIRQILTNLVGNAVKFTAQGHVLVRVTGVPDASAQS 377

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            D   ++++ G  I  D    +F  F  + +A   Q  G GLGL+I +  I + GG V +
Sbjct: 378 CDIHVAIEDTGIGIEADKIAHIFGEFNQIEDAQNRQFEGTGLGLAITKRLITMMGGTVWV 437

Query: 775 SS 776
            S
Sbjct: 438 ES 439


>gi|182682436|ref|YP_001830596.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa M23]
 gi|182632546|gb|ACB93322.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa M23]
          Length = 558

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++ERA   +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +  +   
Sbjct: 293 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 345

Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662
           Y  +  I++S+ +   L++D+LDL+++  G M+L    + L + + EV    +Q + +K 
Sbjct: 346 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 405

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               +R   +    LG    D  RL QIF  +LSNA+ F+     + ++   D   F  S
Sbjct: 406 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 461

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I  +    +F+RF        R   G+GLGL+IV+S + +HGG+V  +S   G
Sbjct: 462 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 521


>gi|121727517|ref|ZP_01680635.1| sensor histidine kinase FexB [Vibrio cholerae V52]
 gi|147673942|ref|YP_001217872.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           O395]
 gi|262168356|ref|ZP_06036053.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC27]
 gi|121630185|gb|EAX62587.1| sensor histidine kinase FexB [Vibrio cholerae V52]
 gi|146315825|gb|ABQ20364.1| sensor histidine kinase FexB [Vibrio cholerae O395]
 gi|227014264|gb|ACP10474.1| sensor histidine kinase FexB [Vibrio cholerae O395]
 gi|262023248|gb|EEY41952.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC27]
          Length = 785

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|302185510|ref|ZP_07262183.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae 642]
          Length = 917

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|301299825|ref|ZP_07206061.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852578|gb|EFK80226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 383

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ ++ E  R  DE+    + +VS+++R+PLT+IIG+  L++  +  S      +Y   
Sbjct: 140 KAMEDEREIERSKDEL----ITNVSHDIRTPLTSIIGYLGLIEDKQYRS-EEDILKYTHT 194

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S  + +LV+D+ +   V      L   ++ LN +L ++  S   + ++  + I  I
Sbjct: 195 AYLKSKQMKSLVDDLFEYTKVRQTDAPLQIQSLELNAMLEQIGASFELEANKKGMEINTI 254

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIP 731
                    AD ++L ++F+ +++NA+ + S G  + L+  + D  +    + N+G  IP
Sbjct: 255 LPNNPVKIEADPEKLARVFNNLITNALKYGSDGKNIYLQLTKVDEKEIEIRISNDGEPIP 314

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E   + VF+RF  V ++   +  G GLGL+I +S I LH G++ +  S++ +T+   R+P
Sbjct: 315 EKSLRQVFDRFYRVESSRSKETGGTGLGLAIAQSIIELHHGYIYV-ESNKNLTSFIMRLP 373

Query: 790 SK 791
            K
Sbjct: 374 IK 375


>gi|229514004|ref|ZP_04403466.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           TMA 21]
 gi|229349185|gb|EEO14142.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           TMA 21]
          Length = 785

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|82702620|ref|YP_412186.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410685|gb|ABB74794.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 696

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 5/231 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EA R A+ IK+ F+  +S+ELR+PL  I+G++ L+    +   N    + +E I  ++
Sbjct: 309 RSEAER-ANRIKDDFLATLSHELRTPLNAILGWSQLILQGTMK--NEDIQRGLETIERNA 365

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
                L+ D+L+++++ +  ++L+     L  +     +S+A       I I+   D   
Sbjct: 366 RAQNKLIEDLLEMSSIISNKIRLDMQEWDLGAIAEAAVESVAPAAEAKGICIRRTIDATA 425

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           G  + D  RL QI   +LSNA+ F+  G TV +   R        VK++G  I  +    
Sbjct: 426 GRVLGDNHRLQQIIWNLLSNAVKFTPDGGTVEVIVERAASQLRVIVKDSGVGIKPEFLAY 485

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           VF+RF        R   G+GLGL+IV+  + LHGG V   S  EG     C
Sbjct: 486 VFDRFRQADSSLTRNHGGLGLGLAIVKQLVGLHGGTVCAESKGEGQGASFC 536


>gi|39995255|ref|NP_951206.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982017|gb|AAR33479.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|298504260|gb|ADI82983.1| sensor histidine kinase, PAS and GAF domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 709

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 161/352 (45%), Gaps = 67/352 (19%)

Query: 492 NESDGWDLFAAI------------------ITSFDDERK----SLQGTLELLSDSVLEYS 529
           +ES GW  FAA+                  + SF DE      S+ G + ++ ++   ++
Sbjct: 312 DESAGWKGFAAVPLFAKNRVTGVMYLLNRQMRSFTDEELKLFFSIAGQMGIIIENARLFN 371

Query: 530 IIPLPNAQTMLTFVNVTDS----------VRAERALTEK-NEALRKADEIKNSFVQHVSY 578
            +   + + M +F  +  S          +R    L E+ N+ L + D +KN+F+  +S+
Sbjct: 372 ELKWKSDELMGSFRLLEKSSHELALSQHRLRTNLTLVERANQELERIDRMKNNFLGMISH 431

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E R+PLT++I  TD L++S   + +    Q ++ I      L  +VNDIL +A ++A   
Sbjct: 432 EFRTPLTSVISGTDFLRSSSSLAGDPDSRQVLDMIHEGGERLFEIVNDILKVARLEAKSA 491

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            +    + ++ + ++V   +   + E ++RI   +   L   + D++   +IFS++L N+
Sbjct: 492 TVARRALHISQVFSQVVTKLEPLLAERSLRIVFNNLEGLPHCIGDQECFEEIFSELLENS 551

Query: 699 MDFSSKGSTVILKA---------------ARDNGDFI----------FSVKNNGSSIPED 733
           + F+  G T+I+ A               AR N DF            +V++NG  +  D
Sbjct: 552 VKFTPDGGTIIISARVVDRRALAPKREILARFNADFPSQIGDRCYLEVAVRDNGIGVSHD 611

Query: 734 MCKSVFNRFV---------SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F++F          S   + Q +G GLGL+IV+  +  HGG V + S
Sbjct: 612 EQVKIFDKFYEIGDIRHHSSGKFKFQGKGTGLGLAIVKGMVEAHGGMVWVES 663


>gi|304320167|ref|YP_003853810.1| Signal transduction histidine kinase [Parvularcula bermudensis
           HTCC2503]
 gi|303299070|gb|ADM08669.1| Signal transduction histidine kinase [Parvularcula bermudensis
           HTCC2503]
          Length = 651

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 13/253 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + +T+    +VT   +    + E     R   E K  ++  +S+E+R+PL  I+G   LL
Sbjct: 85  DGETLYLGTDVTRDRKNYAVMRELARTARAVSEEKMRYLATMSHEMRTPLNGILGMNGLL 144

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S L   +  Q  Y E +  + T LL L+ND+LD + + AG + L         LL EV
Sbjct: 145 LDSPL---DVNQRAYAEAVQQAGTALLTLINDVLDYSKIQAGHLDLEEKPFSPGALLKEV 201

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILK 711
            + +A +  E  I I ++    +    V D  RL Q+   + +N + F+++G  S  IL 
Sbjct: 202 AEILAIRADEKGIDIALLLHPDIPEELVGDPARLRQVLVNLATNGVKFTTEGGVSLEILP 261

Query: 712 AARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
                 D       + F V++ G  I  D    +F  F   +      G GLGL+I    
Sbjct: 262 GTGSTDDDLIDHRRYSFRVRDTGKGIAADNLDRLFEEFDQGSDPSAEEGTGLGLTIARQL 321

Query: 765 INLHGGHVSISSS 777
           +N  GG++ ++S+
Sbjct: 322 VNAMGGNIDVTSA 334


>gi|330974369|gb|EGH74435.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 917

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1253

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 15/276 (5%)

Query: 529 SIIPLPNAQTMLT-FVNV----TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           S+ P+ +    +T +V V    T+    E AL E      +A   K+ F+ ++S+E+R+P
Sbjct: 531 SVTPIKDTHGHVTHYVTVEEDMTERKAMEDALREAKNVAEEASRAKSIFLANMSHEIRTP 590

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G T+L   ++   L++ Q +Y+     S+  LL ++ND+LD + V+AG ++L  +
Sbjct: 591 MNGILGMTELALQTE---LSTTQRRYLTIAHNSAKSLLVIINDVLDFSKVEAGEIRLEQT 647

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFS 702
           +    + +  V QSIA   +   I +    D +L  + V D  RL QI + +L NA+ F+
Sbjct: 648 SFDPVETVENVMQSIAYSAYSKGIELMNHIDHRLSHYLVGDPTRLQQILNNLLGNAVKFT 707

Query: 703 SKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
             G  ++    +   D      F V + G  IP +   S+F  F  V  + R +  G GL
Sbjct: 708 DTGHVLLDVEVQGESDSEAHLHFRVIDTGIGIPANKIDSIFESFSQVEASDRRKFGGTGL 767

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I    ++L  G + + S     +T +  IP ++
Sbjct: 768 GLAITRKLVHLMNGRIWVESHMGEGSTFHFVIPFRK 803


>gi|329847837|ref|ZP_08262865.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328842900|gb|EGF92469.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 656

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 5/241 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  RAE AL +  E    A+  K+ F+   S+ELR+P++ I+GF  LL+  +  +L 
Sbjct: 390 DMTERRRAEEALKDAREEAIAANLAKSEFLSRTSHELRTPMSAILGFGQLLELDE-NTLA 448

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   VE I  +   LL+L+ND+LD+++++AG  +L    + + D + EV+  +A  + 
Sbjct: 449 PHQRAAVEQIMMAGRHLLSLINDLLDISSIEAGGAELVIQDVDVADAIYEVQTLVAPIVA 508

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + + V+ D   G  V ADR+RL+QI    ++NA  +   G  V + A  ++      
Sbjct: 509 GAGLTL-VVRDMTSGLTVSADRRRLIQILLNFIANAAKYHRSGQFVFVSARMEDDHVRIE 567

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  I +     +F  F  +    R +  G GLGL++ +  +    G +   +  +G
Sbjct: 568 VEDDGDGIDKAAVSRLFTPFDRLGQPKRSKTEGTGLGLALSKRLVESMTGQIGYETPAKG 627

Query: 781 V 781
            
Sbjct: 628 A 628


>gi|298376648|ref|ZP_06986603.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266526|gb|EFI08184.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 423

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 132/251 (52%), Gaps = 20/251 (7%)

Query: 532 PLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P P A  +L  +  ++T+  + + AL +    +++AD++KN+F+ ++S+E+R+PL  I+G
Sbjct: 151 PDPGASPLLLVMLNDITEQRQDQLALMK----VQEADKMKNAFIANMSHEIRTPLNAIVG 206

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  L+  +   S   +Q +Y   I+ +  +LL  +NDILDL+ +++G +  N S + L D
Sbjct: 207 FAHLVTETTNAS---EQREYFSIINKNCDLLLKQINDILDLSKIESGRLNYNVSEVELRD 263

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGS 706
           +  E     + KM  +   + ++ +      V    D  R+ Q+   +LSNA+ F+SKG 
Sbjct: 264 ICQEAYVVQSLKMTSD---VALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKGF 320

Query: 707 TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             +     D   F+  SV + G  I E+  +SVF RFV      Q  G GLGL I +  +
Sbjct: 321 ISLFYEVEDM--FVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ--GAGLGLPICKMIV 376

Query: 766 NLHGGHVSISS 776
              GG + + S
Sbjct: 377 EQLGGEIGVRS 387


>gi|293368635|ref|ZP_06615242.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292636277|gb|EFF54762.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 701

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 16/236 (6%)

Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L EKNE L        +AD++K  F+Q++S+E+R+PL  I+GF+ LL    L   + +
Sbjct: 457 RQLQEKNEELTIARDRAEQADKMKTHFMQNMSHEIRTPLNAIVGFSQLLSNPDLPLEDEE 516

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + ++      +S +L  LVNDILDL+ +++G   +N ++   N++   +  ++  +  E 
Sbjct: 517 KLEFSSLAQHNSELLTTLVNDILDLSALESGKYTMNLTSCHCNEMCRLILSTVMDRKAEG 576

Query: 666 NIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
              +K+    ++        D QRL Q+    L+NA   + KG   +  +  +  D I F
Sbjct: 577 ---VKLYYTSEVADDFQITTDEQRLQQVLINFLTNAEKHTEKGEIHLHCSLTEYPDRITF 633

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           SV + G  IP D   SVF RF       Q  G GLGL+I  +      G V +  S
Sbjct: 634 SVSDTGPGIPADKMDSVFERFKKLDEFKQ--GSGLGLNICRTIAERLHGEVKVDKS 687


>gi|317128714|ref|YP_004094996.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473662|gb|ADU30265.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 483

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 119/248 (47%), Gaps = 14/248 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +++  ER   EK          +N F+ ++S+ELR+PLT + GF + L+   +    S+Q
Sbjct: 241 NTIENERGTLEKR---------RNDFIANISHELRTPLTAMKGFLEALQDGLVKDTESQQ 291

Query: 607 SQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             Y   I    T  LN LVND++DL  ++   + L+   + L +++ +V  ++   +   
Sbjct: 292 KYYA--IMYRETEYLNHLVNDLMDLIKLERQDISLDLYCVHLQEIIRKVALNLQPSIESR 349

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N  I + +   +   + D  RL QIF  I+ NA  F+  GS  I        +    + +
Sbjct: 350 NNDIIIDAPDNIPPVIGDSIRLEQIFKNIIHNANKFTENGSITIKLEEHCKDNVCVKISD 409

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP    K ++ RF  V    + + RG GLGL+IV+  + LH G +++ S     TT
Sbjct: 410 NGIGIPSYDVKRIWERFFKVDRVRQKKERGTGLGLAIVKELVQLHHGEITVESELGVGTT 469

Query: 784 INCRIPSK 791
                P++
Sbjct: 470 FTIFFPTQ 477


>gi|229521204|ref|ZP_04410624.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TM
           11079-80]
 gi|229341736|gb|EEO06738.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TM
           11079-80]
          Length = 785

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|242278589|ref|YP_002990718.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121483|gb|ACS79179.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 832

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 179/375 (47%), Gaps = 41/375 (10%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D+L++G+ V   +G+I ++NPA   L+   EN L  G  IR        ++ E +   L
Sbjct: 262 MDNLADGLLVVDINGKISVTNPALGELFGVTENELR-GKDIRT-------FFPE-EMTAL 312

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  +      E +     +EL      +    P+       T      +V   R +T + 
Sbjct: 313 FELVKGC---EHEVYSSEIELTGRKTGKAVATPIHKMDEGDTPNICLGAVILVRDITYEK 369

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-------NSKQSQYVEY 612
           E     D +K  F+  VS+ELR+P+T+I+GF  ++K     S+       + K  + +  
Sbjct: 370 EV----DNLKTDFISTVSHELRTPMTSILGFAKIIKKKLEKSVFPVCNAPDKKTERAINQ 425

Query: 613 ISASSTILLN-------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           +  +  I+++       L+ND+LD+A +++G +      I +++++    Q+        
Sbjct: 426 VKDNIGIIVSEGQRLTELINDVLDIAKMESGKIDWKNVPIDISEVIETSVQTTTPLWKPQ 485

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVK 724
           ++++ V  +  + +   DR R++Q+   ++SNA+ F++ GS  I   AR + D I  SV 
Sbjct: 486 DLQMVVDVEENIPTIHGDRDRVMQVLVNLISNAVKFTASGS--ITCTARSHADEIMVSVS 543

Query: 725 NNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
           + GS I PED  K +F RF    +   G+ +G GLGL I +  ++ H G + + S   EG
Sbjct: 544 DTGSGISPEDQ-KKIFQRFKQAGDTLTGKPKGTGLGLPICKQIVDHHKGRIWVDSKLGEG 602

Query: 781 VT---TINCRIPSKE 792
            +   T+   +P +E
Sbjct: 603 SSFHFTLAIGVPDEE 617


>gi|163747187|ref|ZP_02154542.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanibulbus indolifex HEL-45]
 gi|161379462|gb|EDQ03876.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanibulbus indolifex HEL-45]
          Length = 511

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 135/292 (46%), Gaps = 31/292 (10%)

Query: 526 LEYSIIPLPNAQT--MLTFVNVTDSVRAERALTEKNEALRKADEI-------KNSFVQHV 576
           +EY +I L  A T  M+T   +   V   R   E  E LR+A +        K+ F+  +
Sbjct: 210 VEYQLIALIIAGTAAMITLAALFSYVVENRTRNESIEELRRARDAAESASRAKSEFMSVL 269

Query: 577 SYELRSPLTNIIGFTDL---LKTSKLGSLNSKQSQ--------------YVEYISASSTI 619
           S+ELR+PLT +IG+      LK   L  L+ ++                Y + I  +   
Sbjct: 270 SHELRTPLTIVIGYAGFLSELKRHNLAKLSPEEKPASEHFTKMGDQAELYGQRIKFAGGQ 329

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++NDILD   ++   + L+ +      LL EV +      H+ +  + +  D    +
Sbjct: 330 LLTIINDILDYTNMELNDLALDKAAFDTRALLEEVVEEHNGAAHDKSATLHI--DTLPLN 387

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +ADR+R +Q+ S I+ NA+ F SK   + L+A      F F V++NG  I E+  + +F
Sbjct: 388 VIADRRRSVQVLSHIVGNALKF-SKARDIYLRARPHVDGFCFEVEDNGVGIAEEDFERIF 446

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F  + +A      G GLGL+I       HGG +S+ S+    TT    IP
Sbjct: 447 EAFTQIEDADDRAEGGTGLGLAICRKLARAHGGDISVKSTLGRGTTFTVFIP 498


>gi|66046927|ref|YP_236768.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257634|gb|AAY38730.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Pseudomonas syringae pv.
           syringae B728a]
          Length = 917

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|310641861|ref|YP_003946619.1| sensor histidine kinase vans [Paenibacillus polymyxa SC2]
 gi|309246811|gb|ADO56378.1| Sensor histidine kinase VanS [Paenibacillus polymyxa SC2]
          Length = 368

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 135/276 (48%), Gaps = 12/276 (4%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           ++  +D  L YSI P+ +A  + T     +++  +  L+ + E  R + + KN  +  VS
Sbjct: 96  MQKFADGNLSYSI-PVSSADELATLAKNMNTMADKLRLSLEEE--RASAKAKNDLITGVS 152

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           ++LR+PLT++IGF + ++T +      +   YV      S  L  L++++ +   V  G 
Sbjct: 153 HDLRTPLTSVIGFLEYIETDRYRD-EMELRYYVNIAYEKSLTLKKLIDELFEYTRVSGGS 211

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKIL 695
           + L    + L  LL ++ +     + + ++  R++++   ++   +AD   L++++  + 
Sbjct: 212 LPLELKPVDLGKLLTQLAEEFVPSLEQADMSYRVRIVEPVRI---LADTDELVRLYENLF 268

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRG 753
           SNA+ +   G    +   R+  + I    N G+ IP++    +F RF  V  +   +  G
Sbjct: 269 SNAIRYGKDGKRFDITIGREGDEAIVICTNYGAPIPQEDVPHLFERFYRVDKSRSKETGG 328

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I +S   LH G +S+ SS    T    R P
Sbjct: 329 TGLGLAITKSITELHNGRISVRSSRRQ-TDFETRFP 363


>gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1465

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 927  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLMEKNTNQMLQ 984

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 985  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1044

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+ S GS  I     D+G   +  V++NG  IP++    +F 
Sbjct: 1045 DKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQNKLTEIFE 1104

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  +NLH G +   S +
Sbjct: 1105 RFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPE 1144


>gi|269128961|ref|YP_003302331.1| multi-sensor signal transduction histidine kinase [Thermomonospora
           curvata DSM 43183]
 gi|268313919|gb|ACZ00294.1| multi-sensor signal transduction histidine kinase [Thermomonospora
           curvata DSM 43183]
          Length = 1383

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 13/262 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGF 590
           +T L  +    S    RALT + +  R+A+E+      K  F   +S+E R+PLT I+G 
Sbjct: 310 RTFLRLLGQETSALISRALTYRAQQ-RRAEELAELNRAKTVFFTDISHEFRTPLTLIVGP 368

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + L+ S+LG  +    + +E I  S+  +  LV+ +LD A ++AG M+  Y    L   
Sbjct: 369 LEELR-SRLGPADQWVRENLEIIRHSALRMTRLVDTLLDFARIEAGRMEARYQPTDLAVF 427

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVI 709
             ++       + +  +R++V           DR    +I   +LSNA+ F+ +GS TV 
Sbjct: 428 TADLAGVFRAAVDKAGLRLEVDCPPLPEPVYVDRGMWEKIVLNLLSNALKFTFEGSITVR 487

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           L+A  ++G  +  V + G  + E     VF RF  V  A      G G+GL++V   ++L
Sbjct: 488 LRA--EDGQAVLRVSDTGVGMSEQDLPRVFERFQRVKAAQTRSIEGSGIGLALVRELVHL 545

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG + + S+    TT   R+P
Sbjct: 546 HGGTIGVDSTLGKGTTFTIRLP 567


>gi|225852106|ref|YP_002732339.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis ATCC 23457]
 gi|256264384|ref|ZP_05466916.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640471|gb|ACO00385.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis ATCC 23457]
 gi|263094678|gb|EEZ18457.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408601|gb|ADZ65666.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis M28]
 gi|326538322|gb|ADZ86537.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis M5-90]
          Length = 609

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  +  H G + + S     T +  R+P
Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 556


>gi|242783978|ref|XP_002480294.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218720441|gb|EED19860.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 2394

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 140/279 (50%), Gaps = 40/279 (14%)

Query: 543  VNVTDSVRAE---RALTEKNEALRKAD-----------------EIKNSFVQHVSYELRS 582
            V+ T++   E   RAL +  EA +KA                    K+ F+ +VS++LR+
Sbjct: 1844 VSATNAAMVESQKRALAQAREAEQKAKIAEAEANHNVKLKEDAARAKSVFLANVSHDLRT 1903

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            P+  +IG ++LLK +KL   + +Q  YVE I   +  LL L+NDILD + ++AG MK++ 
Sbjct: 1904 PMNGVIGLSELLKGTKL---DKEQDNYVESIRVCADTLLTLINDILDFSKLEAGKMKIST 1960

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSN 697
              + L + + EV +++     +  +       KV  D  +   + D  RL QIF  +LSN
Sbjct: 1961 VPLSLKETIREVVRALRYTHRDRGLETIEDLDKVPEDLVV---MGDPVRLHQIFMNLLSN 2017

Query: 698  AMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
            +  F+ KG    S ++++  +       SV + G  IPE+    +F  F S A     R 
Sbjct: 2018 SYKFTPKGYVKVSAMVVREGKGRVRLECSVADTGIGIPEEHKSRLFRPF-SQADNSTARS 2076

Query: 753  --GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRI 788
              G GLGLSI ++ I ++ GG + + S+    TT+  ++
Sbjct: 2077 YGGSGLGLSICKAIIEDVLGGLIWLDSTPGVGTTVTFQL 2115


>gi|242278432|ref|YP_002990561.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242121326|gb|ACS79022.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 802

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 133/264 (50%), Gaps = 13/264 (4%)

Query: 535 NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           N +T+L  +  ++T  ++ E+ L+   E+  +A++ K+ F+ ++S+E+R+PL  ++G   
Sbjct: 394 NGKTLLISIIHDITKRLKNEKELSAAKESAIRANKTKDEFLANISHEIRTPLNGVMGMLQ 453

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           ++ ++K   LN +    +     SS  LL +++DILDL+ V+ G + L      LN LL 
Sbjct: 454 VMNSAK---LNQEHRNCISVALQSSRNLLRVLDDILDLSKVEMGTLDLFEDKFSLNKLLE 510

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           E       +  +  + +   I       +  D  R+ QI   ++ N++ F+  G   +  
Sbjct: 511 ESINLFKPQAEKKEVDLSYSIFPETESYYFGDEGRIRQILFNLIGNSIKFTDHGEIRVEA 570

Query: 712 AA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
            A     +D  +  F+V + G  IPED  + +F+ F  V  +   + +G GLGL+IV+  
Sbjct: 571 RAGPGTCQDKNNLHFTVSDTGIGIPEDYQERIFDSFTQVDGSLSRRYKGAGLGLAIVKRL 630

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I L  G + I SS    TTI+  I
Sbjct: 631 IELMEGSIKIESSLHHGTTISFTI 654


>gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 918

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 14/242 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q+  VE I++S
Sbjct: 396 QAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPL---DRGQAACVETIASS 452

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
              L++++NDILD A +++G ++L      L +LL++       +  E  +R+ +  D G
Sbjct: 453 GNALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAREKRLRLHLGLDRG 512

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSS 729
                  D  RL Q+ + +L NA+ F+++G   +       +A R+    ++SV ++G  
Sbjct: 513 VPRRLNGDPTRLRQVLTNLLGNALKFTAEGHVALRVQRRFDEAGRER--LLYSVSDSGIG 570

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I      ++F  F        RR  G GLGL+I    + + GG + +SS     T  +  
Sbjct: 571 ISAQAQATLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVD 630

Query: 788 IP 789
           +P
Sbjct: 631 LP 632


>gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1299

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            +E+K  F  ++S+ELR+PLT II   + L   +      KQ   ++ I  ++  LL+LVN
Sbjct: 793  EEMKYRFFTNISHELRTPLTLIIAPLEYLLKKEENPDTRKQ---LKTIDRNAHNLLSLVN 849

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
             +LD   ++     L   T  L D+L+ + +S      E NIR       +     AD  
Sbjct: 850  QLLDFRRIEMKGETLALETFNLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLVTADSP 909

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNR 741
            ++ ++ + +LSNA  F+ +G  V LKA  +  D     +  V+++G  IP +    +F R
Sbjct: 910  KIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPTEEQTHIFER 969

Query: 742  F-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F  +++H+G   G G+GL++ + ++ +H G +++SSS    +    RIP
Sbjct: 970  FHQASSHKGN-TGSGIGLNVAKEYVQMHHGKINVSSSPGKGSCFTVRIP 1017


>gi|312143399|ref|YP_003994845.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904050|gb|ADQ14491.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 613

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ D +K+ FV  VS+E R+PLT++     ++     G LN +Q + +E        L 
Sbjct: 376 LKEIDNMKSEFVSTVSHEFRTPLTSMNMGLSMVINEDTGELNEEQHELLEAAYEDVERLT 435

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LDL+ +++G +++ +  + +ND++ +       +  E +I +K     +     
Sbjct: 436 ELVNDLLDLSKIESGKIEMEFDKVDVNDIIEKTLNPFFKQAEEKDIELKFKQSEENVFAY 495

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           AD  ++  + S ++ NA+ ++ +G   +   +K  R     + SV +NG  IP++    +
Sbjct: 496 ADPSKISWVISNLIGNALRYAEQGKIEVDAEIKGRR----VLVSVADNGPGIPKEYQAKI 551

Query: 739 FNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F +FV   + + ++ G GLGL+I +  I  H G +   S +   +T +  IP
Sbjct: 552 FEKFVRTGNDQDEKSGTGLGLAIAKEIITAHNGRIWFDSEEGEGSTFSFYIP 603


>gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192]
 gi|306531662|gb|ADN01196.1| putative histidine kinase [Spirochaeta thermophila DSM 6192]
          Length = 900

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 21/258 (8%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R  R L E N  L KA+  K+ F+ +VS+E+R+PL  I+GF + LK    G  + ++
Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALK----GEQDPRE 438

Query: 607 SQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            + +++ + + +  L  L+++ILD+  ++ G + L+ S   L++++  V      ++ E 
Sbjct: 439 REGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYV-----CRVMEE 493

Query: 666 NIRIKVIS------DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           N R K +S      DG     V D  RL Q+   ++ NA+ F+ +G   +     + G+ 
Sbjct: 494 NARRKGLSFSFEIEDGVPVWVVGDPFRLQQVIMNLVGNAVKFTEEGGVRVRVGCVEEGEG 553

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                 V++ G  IPE+M + VF  FV       RR  G GLG++I    + L GG V +
Sbjct: 554 RWIEVEVRDTGIGIPEEMREKVFESFVQADTSTTRRYGGSGLGMTIARELVRLMGGDVWL 613

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     T +  RIP  E
Sbjct: 614 ESEVGKGTRVWFRIPCVE 631


>gi|302382311|ref|YP_003818134.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192939|gb|ADL00511.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 580

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 3/223 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+ ++S+ELR+PL  ++GF+D+++    G L+ K ++Y + I  + + LL+L+ D+L
Sbjct: 329 KTRFLANMSHELRTPLNAVLGFSDVMRQRLFGPLSPKYAEYADNIHEAGSHLLDLIGDVL 388

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687
           D++ ++A   +L+       ++++     +     +  + +  ++ D  L +  ADR+ L
Sbjct: 389 DVSKIEAERYELSREPFDAREVVSAAVALVRGTATDGGVTLASLLPDDPL-AVEADRRAL 447

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +LSNA+ F+  G +V L            V + G  I     K +   F     
Sbjct: 448 KQITLNLLSNAIKFTPSGGSVTLTLETIGPYLEMVVADTGVGIAARDLKRLGRPFEQAGE 507

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             QR +G GLGLS+V +   LHGG +SI S+    T +  R+P
Sbjct: 508 ADQRAKGTGLGLSLVRALAELHGGRMSIESTLGEGTAVTVRLP 550


>gi|91773227|ref|YP_565919.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91712242|gb|ABE52169.1| Multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 607

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 121/237 (51%), Gaps = 2/237 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E N  L   D +K+ F+ ++S+ELR+PL  I GF  L+   + G L+ +Q + ++ + 
Sbjct: 370 LAEANYQLESLDRMKDEFLANLSHELRTPLNVIKGFGGLMSEERFGKLDERQRKAMDAVM 429

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++TIL+ LV  +L + +V A ++K +++ I +   L      +A+ + +  + +K+   
Sbjct: 430 RNTTILIELVESLLYITSVQADMIKYSFAQINVESSLERAISLVASNIEKKRLMLKIDVK 489

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D+  L ++F  +L NA+ F+    TV +   R       ++K+ G  +  D 
Sbjct: 490 KDLPYIRGDKVYLEKVFVHLLGNAIKFTPASGTVSVFMDRTRDSLHIAIKDTGVGVASDQ 549

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F++F  +  +   +  GVG+GL I +  ++ H G + + S +   T I+  +P
Sbjct: 550 IPYMFHKFRQLDGSLTRKYGGVGIGLYICKHIVDAHKGKIWMESEEGTGTDIHIILP 606


>gi|30697334|ref|NP_176808.3| ETR1 (ETHYLENE RESPONSE 1); ethylene binding / protein histidine
           kinase/ two-component response regulator [Arabidopsis
           thaliana]
 gi|1352397|sp|P49333|ETR1_ARATH RecName: Full=Ethylene receptor 1; Short=AtETR1; AltName:
           Full=Protein ETHYLENE RESPONSE 1; AltName: Full=Protein
           ETR1
 gi|12324402|gb|AAG52169.1|AC020665_14 ethylene-response protein, ETR1; 36345-39013 [Arabidopsis thaliana]
 gi|902360|gb|AAA70047.1| ETR1 [Arabidopsis thaliana]
 gi|332196376|gb|AEE34497.1| ethylene receptor 1 [Arabidopsis thaliana]
          Length = 738

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 432 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 491

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
              DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 492 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 550

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 551 SKRFVNLMEGNIWIESDGLG 570


>gi|67525289|ref|XP_660706.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4]
 gi|40744497|gb|EAA63673.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4]
 gi|259485950|tpe|CBF83405.1| TPA: sensor histidine kinase/response regulator, putative
            (AFU_orthologue; AFUA_3G12550) [Aspergillus nidulans FGSC
            A4]
          Length = 2312

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 31/260 (11%)

Query: 552  ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RALT+  +A +KA                  + K+ F+ ++S++LR+P+  +IG ++LL
Sbjct: 1824 KRALTQARDAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1883

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +KL   + +Q +YVE I   +  LL L+NDILD + ++AG MK++   + + + ++EV
Sbjct: 1884 KGTKL---DREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEV 1940

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
             +++     +  +      D      V   D  RL QIF  +LSN+  F+ KGS TV  K
Sbjct: 1941 VRALRYTHRDRGLETIEDLDEVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVSAK 2000

Query: 712  AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
              R+    +    SV + G  IP++    +F  F S A     R   G GLGLSI ++ I
Sbjct: 2001 VTREGKGRVRLECSVSDTGIGIPDEQKPRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2059

Query: 766  -NLHGGHVSISSSDEGVTTI 784
             ++ GG + + S     TT+
Sbjct: 2060 EDVLGGAIWLDSVPGAGTTV 2079


>gi|326565978|gb|EGE16139.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           103P14B1]
 gi|326575373|gb|EGE25298.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           101P30B1]
          Length = 988

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+ ++S+ELR+PL +I GF +LL  ++ G L  +Q+ YV+ I  SS  LL LVND
Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685
           +LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D  
Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F  
Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFSQ 496

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 RR  G GLGL I +    L GG +
Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526


>gi|302186340|ref|ZP_07263013.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. syringae 642]
          Length = 1003

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +G     N    +
Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVGDTHFENRNIRR 584

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 644

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  + +FSV ++G 
Sbjct: 645 LNCTAAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQNEVLFSVSDDGI 703

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 704 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSVDSGSVFSFTL 762

Query: 789 P 789
           P
Sbjct: 763 P 763


>gi|254784795|ref|YP_003072223.1| two-component hybrid sensor and regulator [Teredinibacter turnerae
           T7901]
 gi|237684045|gb|ACR11309.1| putative two-component hybrid sensor and regulator [Teredinibacter
           turnerae T7901]
          Length = 975

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + + +L +++  K  F+  V++ELR+PL ++IGF+ +L  S+    +SK+ + VE I 
Sbjct: 315 LLKSHRSLEESNRFKTEFLASVTHELRTPLNSVIGFSRVLLKSRSNEQSSKEHRAVEAIF 374

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +ST LL ++NDILDL+ ++ G + L  S  +L+D++ EV + +     +  +  ++++ 
Sbjct: 375 RNSTHLLGVINDILDLSKIETGSITLEKSEFLLSDVIQEVFEMLEPLADKKQLTFQLLNY 434

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFI-FSVKNNGSSI 730
            +    V+D  +L Q+   + SNA+ ++ +GS VI     D+   G+ +  SV++ G  I
Sbjct: 435 ARNLRLVSDMAKLRQVLINLCSNAVKYTERGSVVICIERADHEELGEVVKISVRDTGIGI 494

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            E     +F  F     A      G GLGL I    + + GG +   S
Sbjct: 495 EESEKNKLFVEFSRTEAAINSGAEGTGLGLMISAKLVQVLGGAIDFDS 542


>gi|209527277|ref|ZP_03275787.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492265|gb|EDZ92610.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1051

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 124/247 (50%), Gaps = 20/247 (8%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A   A+  K+ F+ ++S+ELR+PL  I+GFT LL+  +  +L +K  +Y++ ++ S   
Sbjct: 558 DAANVANRAKSEFLANMSHELRTPLNAILGFTQLLQRDR--TLAAKHQEYIKIVNQSGQH 615

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+ND+L+++ ++AG +  N +   +   L  ++  +  K     + +    +  +  
Sbjct: 616 LLELINDVLEMSKIEAGRITCNPTEFDIKRCLPAIQVMLQLKAESKGLTLNFQVEESVPK 675

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------FIFSV 723
           FV  D  +L Q+   ++SNA+ F+  G  V L+ +    D                +F +
Sbjct: 676 FVRTDESKLRQVLVNLISNAIKFTQDGE-VSLRVSVGGVDEDLGLSDEDWVSNTYLLFEI 734

Query: 724 KNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I  +    +F  F  + A R  ++G GLGL I + F+NL GG + +SS     +
Sbjct: 735 IDTGCGIASEEINDLFQAFKQTKAGRESQQGTGLGLVISQRFVNLMGGEIKVSSKPGEGS 794

Query: 783 TINCRIP 789
             + +IP
Sbjct: 795 CFSFQIP 801


>gi|153870999|ref|ZP_02000277.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072537|gb|EDN69725.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 673

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 18/247 (7%)

Query: 545 VTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           + +  + E+AL+E  E    A +        K+ F+ ++S+ELR+PL  IIG++++L+  
Sbjct: 150 IVERQQIEKALSEAKEIAEHARQEAETANITKSQFLANMSHELRTPLNAIIGYSEILRED 209

Query: 598 KLGSLNSKQSQYV---EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              + + +Q  ++   + I  +   LL L+ND+LDL+ +++G M L    + L+ L+++V
Sbjct: 210 ---AEDLEQEDFIPDLKKIDTAGRHLLGLINDVLDLSKIESGKMDLLIEPVNLDMLIDKV 266

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712
             ++   + +    +K+     LG    D  +L QI   +LSNA  F+ +G     I   
Sbjct: 267 LGTVQPLIEKKANLLKIERPTVLGKIQTDMTKLCQILLNLLSNAAKFTEQGIIEFQIYHQ 326

Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
               GD  IF V +NG  + E   + +F+ F        RR  G GLGL+I + F  + G
Sbjct: 327 INTEGDKVIFCVTDNGIGMTEKQQEKLFHPFTQADSSTTRRYGGTGLGLTITKDFAEMMG 386

Query: 770 GHVSISS 776
           GH+ ++S
Sbjct: 387 GHIKVAS 393


>gi|39995118|ref|NP_951069.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39981880|gb|AAR33342.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 762

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 161/358 (44%), Gaps = 31/358 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLF 500
           ++EG+AV   DGR+ L NPA + L++   +R+   P   I N    C    +        
Sbjct: 425 MAEGIAVTDRDGRVILFNPAAQQLFEMVPHRVVGQPILDICNQGEFCRLVEH-------- 476

Query: 501 AAIITSFDDERKSLQGTL-ELLSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
              ITS  + R   Q T+ E+  D+    L+ ++ PL +      F  V  SVR   A  
Sbjct: 477 ---ITSMGENRD--QATVREVDLDARGKKLKVTLAPLVDGDGH--FAGVVMSVRDVTAEE 529

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E        D +K  F+  VS+EL++PLT+I G   L+     G     + + +     +
Sbjct: 530 E-------VDRMKTEFISTVSHELKTPLTSIKGSLQLIVDKSRG-FTDVEKELLGVCLRN 581

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L+ LVNDILD+A +++G M+   S     +L+    + +     E+ + +       
Sbjct: 582 TERLIRLVNDILDIAKIESGKMEFALSPHSPAELVEWSVRELEGFAREHGVTVVNEVSAD 641

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L +   D  RL Q+ + +++NA+ FS +G+ V + A + +     SVK+ G  I      
Sbjct: 642 LPAIYGDGDRLGQVLTNLIANAVKFSPRGAVVTISAEQSDNFVAVSVKDRGREIQWADRG 701

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F RF  + +  R Q  G GLGL+I +  +  H G +  S    G       +P  E
Sbjct: 702 KLFKRFQQIDSGDRRQHGGTGLGLAICKEIVERHHGRIFYSEGIGGGNVFTFTVPIHE 759


>gi|301059563|ref|ZP_07200475.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300446328|gb|EFK10181.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 1141

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 150/322 (46%), Gaps = 29/322 (9%)

Query: 468 KTEENR--LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           K  ENR    P T  R +    +  Y      +     IT  D E+++L+ T  LL +S 
Sbjct: 497 KGMENRDYTDPETS-RRMYRAFNETYRTGRPANFLGYRITRKDGEQRNLELTASLLKNSE 555

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E S              +VT   RAE AL  +      A+  K+ F+ ++S+E+R+PL 
Sbjct: 556 GEPSGF-------RGVIRDVTGRKRAE-ALHREKLTAEAANRAKSQFLANMSHEIRTPLN 607

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG T+L   + +  ++SK    ++ I   S  LL ++NDILD + ++A +++L   + 
Sbjct: 608 GIIGMTEL---AMMRDMDSKHRNILQTIQTESNSLLVIINDILDFSKIEAEMLQLEEISF 664

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               ++  V ++   +  +  + I V     I DG +G    D  RL QI   ++ NA+ 
Sbjct: 665 DPASVVENVVKAFVHRAEQKGLGITVSMERDIPDGVIG----DPGRLRQILINLVGNAVK 720

Query: 701 FSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           F+ KG   I  + A D    I   F+VK+ G  IP+D  K++F  F        R+  G 
Sbjct: 721 FTQKGEIGIEARVAEDLDKRIKLRFAVKDTGIGIPQDKKKTIFKSFTQADSSTTRKYGGT 780

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLG +I +    L GG + + S
Sbjct: 781 GLGTTISKHLAELMGGEIGVES 802


>gi|298504148|gb|ADI82871.1| sensor histidine kinase, HAMP and PAS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 762

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 161/358 (44%), Gaps = 31/358 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLF 500
           ++EG+AV   DGR+ L NPA + L++   +R+   P   I N    C    +        
Sbjct: 425 MAEGIAVTDRDGRVILFNPAAQQLFEMVPHRVVGQPILDICNQGEFCRLVEH-------- 476

Query: 501 AAIITSFDDERKSLQGTL-ELLSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
              ITS  + R   Q T+ E+  D+    L+ ++ PL +      F  V  SVR   A  
Sbjct: 477 ---ITSMGENRD--QATVREVDLDARGKKLKVTLAPLVDGDGH--FAGVVMSVRDVTAEE 529

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E        D +K  F+  VS+EL++PLT+I G   L+     G     + + +     +
Sbjct: 530 E-------VDRMKTEFISTVSHELKTPLTSIKGSLQLIVDKSRG-FTDVEKELLGVCLRN 581

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L+ LVNDILD+A +++G M+   S     +L+    + +     E+ + +       
Sbjct: 582 TERLIRLVNDILDIAKIESGKMEFALSPHSPAELVEWSVRELEGFAREHGVTVVNEVSAD 641

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L +   D  RL Q+ + +++NA+ FS +G+ V + A + +     SVK+ G  I      
Sbjct: 642 LPAIYGDGDRLGQVLTNLIANAVKFSPRGAVVTISAEQSDNFVAVSVKDRGREIQWADRG 701

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F RF  + +  R Q  G GLGL+I +  +  H G +  S    G       +P  E
Sbjct: 702 KLFKRFQQIDSGDRRQHGGTGLGLAICKEIVERHHGRIFYSEGIGGGNVFTFTVPIHE 759


>gi|283851563|ref|ZP_06368843.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573097|gb|EFC21077.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 535

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 13/217 (5%)

Query: 535 NAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             +T++ FV ++TD + +E+ L +  E   +A+  K+ F+ ++S+E+R+P+  ++G TDL
Sbjct: 107 RPKTLIAFVEDITDRIESEKRLRQAKEEAEQANRAKSEFLANMSHEIRTPMNGVMGMTDL 166

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  S    L+    +Y++ I  S T LL ++NDILDL+ +++G   L+     L D L  
Sbjct: 167 LLMS---GLSGPAREYLQLIKQSGTSLLQIINDILDLSKIESGKFVLDCQAFSLRDSLET 223

Query: 654 VKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   +     +  +  + VI+       + D+ RL Q+ + ++ NA+ F+ KG  V L  
Sbjct: 224 ILHPLRLGARDKGLDFRHVIAADAPDRLLGDKGRLGQVLTNLVGNAIKFTEKG-MVRLSV 282

Query: 713 ARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRF 742
             D          F+F V+++G  IP +    +F  F
Sbjct: 283 EPDPEAALPQTVRFLFRVQDDGIGIPAERLTDIFEPF 319


>gi|257094787|ref|YP_003168428.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047311|gb|ACV36499.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 709

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 17/264 (6%)

Query: 527 EYSIIPLPNAQT------MLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYE 579
           +Y+ I LP A T      + +F  + D+VR+ + +L +  EA   A+  K+ F+  + +E
Sbjct: 188 DYAAI-LPAAGTDEIGDLVRSFGEMRDAVRSYDISLNDAREAAEAANHAKSDFLSMMGHE 246

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  ++G   LL    L     ++  Y   I  S   LL L+NDILDL+ +++G ++
Sbjct: 247 LRTPLNGMLGMAQLLLMPNL--TERERQDYARIILTSGQSLLTLLNDILDLSKIESGKLR 304

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
           +  +    +DL+ E     +       + +        G  + +D QRL Q+ SK++ NA
Sbjct: 305 IESAEFDPDDLIRETLALFSASATNKQLVLAGQWRASCGQHYRSDPQRLRQMLSKLIGNA 364

Query: 699 MDFSSKGSTVI--LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + F++ G  V+  ++ ARD    +  FSV + G  IP +    +F  F        R+  
Sbjct: 365 IKFTAHGKIVVEGVEVARDADSAVLEFSVSDTGIGIPAEKLDLLFRPFSQADSSSTRKYG 424

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGLSIV S     GG   + S
Sbjct: 425 GSGLGLSIVRSLTERMGGDAGVDS 448


>gi|254693343|ref|ZP_05155171.1| sensor histidine kinase [Brucella abortus bv. 3 str. Tulya]
          Length = 609

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 11/230 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS--LNSKQSQYVEYISASSTILLNLVND 626
           K   +  VS+ELR+PL +IIGF+D+L T ++GS   + +Q +Y   I  S   LL LVN 
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDML-THEIGSKLASDRQREYAGLIHQSGHYLLELVNA 387

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ 
Sbjct: 388 VLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRA 447

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNR 741
           + QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   
Sbjct: 448 VQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTP 506

Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FV   N++   + G GLGLS+V+  +  H G + + S     T +  R+P
Sbjct: 507 FVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 556


>gi|260754346|ref|ZP_05866694.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 6 str. 870]
 gi|260757565|ref|ZP_05869913.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 4 str. 292]
 gi|260761390|ref|ZP_05873733.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883371|ref|ZP_05894985.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 9 str. C68]
 gi|260667883|gb|EEX54823.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 4 str. 292]
 gi|260671822|gb|EEX58643.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674454|gb|EEX61275.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 6 str. 870]
 gi|260872899|gb|EEX79968.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 9 str. C68]
          Length = 532

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAV 371

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  +  H G + + S     T +  R+P
Sbjct: 431 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 479


>gi|226357435|ref|YP_002787174.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226319425|gb|ACO47420.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 1416

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 127/257 (49%), Gaps = 8/257 (3%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             ++   +VT   +AE+ L   N  L++++     F    S++L+SPL  I  + +L++  
Sbjct: 1165 AVIAMQDVTARRQAEQELQRVNVELQRSNADLEHFAAVASHDLKSPLRTIRSYLELIERR 1224

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              G L+ +  +Y+ + + ++  +  L++D+L  A V     + N + +    ++ EV   
Sbjct: 1225 LTGQLDERSMRYMGFATEAAARMDTLIDDLLAYARVG---RQRNITRVEPQRVVQEVLGG 1281

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD 715
            +   + E   +I+V   G L    AD  +L Q+F  ++ NA+ F  +G    V++ A RD
Sbjct: 1282 LTASIQERGAQIRV---GDLMPVQADESQLRQVFQNLVGNALKFQPEGRVPEVMIDATRD 1338

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                +F V++NG  I E+  + VF  F     + +  G GLGL+IV   I  H G + ++
Sbjct: 1339 GRYVLFQVRDNGIGISEEYYERVFALFQQLHGKSEFPGSGLGLAIVRKIIEEHDGRIWLT 1398

Query: 776  SSDEGVTTINCRIPSKE 792
            S     TT +  +PS +
Sbjct: 1399 SVVGEGTTFHFTLPSSD 1415


>gi|71901893|ref|ZP_00683952.1| PAS [Xylella fastidiosa Ann-1]
 gi|71728347|gb|EAO30519.1| PAS [Xylella fastidiosa Ann-1]
          Length = 558

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++ERA   +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +  +   
Sbjct: 293 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 345

Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662
           Y  +  I++S+ +   L++D+LDL+++  G M+L    + L + + EV    +Q + +K 
Sbjct: 346 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 405

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               +R   +    LG    D  RL QIF  +LSNA+ F+     + ++   D   F  S
Sbjct: 406 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 461

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I  +    +F+RF        R   G+GLGL+IV+S + +HGG+V  +S   G
Sbjct: 462 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 521


>gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 590

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 31/353 (8%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           ++++GV     +G++   NP  R +   EE     G + +N +   ++  N     D+  
Sbjct: 256 NMADGVIALNDEGQVIHINPVARQMLSLEE-----GINGQNFSLELNKLLN----IDMKQ 306

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +   FD+       TL    D++L+    PL     ++  + V   +  +  L    EA
Sbjct: 307 LLNNDFDNSE-----TLIKTKDAILKSIYAPLRRENRIVGHIFVFQDITKQHRL----EA 357

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +RK       FV +VS+ELR+PLT I  + + L     G+L   +   Q+   I+  +  
Sbjct: 358 MRK------EFVANVSHELRTPLTTIKSYAETLLD---GALEEAEISRQFTSVINDEADR 408

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+L+L+ +D    K +   I +  +L  V   +   +      IK     +L  
Sbjct: 409 MTRLVSDLLELSRLDNKETKWDMKPIDIGTILKNVITKMDVNIKRKGQTIKANIPEELPE 468

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  ++ Q+F  ILSNA  ++ +G  + +           + K+ G  IP++    +F
Sbjct: 469 VFADNDKVEQVFQNILSNAYKYTPEGGKIYIDVEYAEKMVKVTFKDTGVGIPKEDLPRIF 528

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF  V      +  G GLGLSI    +  HGG +SISS     T++  +IP+
Sbjct: 529 ERFYRVDKTRSREMGGTGLGLSIAREIVQAHGGEISISSELGKGTSVIIQIPA 581


>gi|319794260|ref|YP_004155900.1| histidine kinase [Variovorax paradoxus EPS]
 gi|315596723|gb|ADU37789.1| histidine kinase [Variovorax paradoxus EPS]
          Length = 493

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +AD+ K  F+  +++ELR+P+  +     +L    L         Y + +      ++
Sbjct: 122 LSEADKRKTEFLATLAHELRNPMAPLSTALAILTRKPL--TPEAALPYYQLMGRQIDHMV 179

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            LVND+++++ +  G ++L    ++++ ++ +  +     M     R++V  +D  L + 
Sbjct: 180 RLVNDLMEVSRITRGKIELQLGELMVDQVIRDAVELSRPLMDAGRHRLEVHAADAPL-AV 238

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+FS +L+NA  ++ +G  + +   RD  + +  V++NG+ +P DM  S+F+
Sbjct: 239 EGDGVRLTQVFSNLLNNAAKYTPEGGRIDVFVERDGANAVVRVRDNGAGLPRDMLASIFD 298

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            F  VS   R  + G+G+GL++V+S + LHGG VS  S   G
Sbjct: 299 MFVQVSGTARAAQGGLGIGLTLVKSLVELHGGTVSAKSEGLG 340


>gi|311032628|ref|ZP_07710718.1| sensor histidine kinase [Bacillus sp. m3-13]
          Length = 462

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 10/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R++   +  L + D  +  F+ +VS+ELR+P++ + G+++ L+   +        ++ E 
Sbjct: 225 RSINTMSSNLDEVDRNRREFLGNVSHELRTPISYLKGYSEALEEGII-----PIEKFAET 279

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  +  LV+D+LDLA ++     +N   ++L +L+ EV      K+++ N+  +V 
Sbjct: 280 VKKETDRMERLVHDLLDLAQLEGDSYPMNKEPVILAELVKEVLDRFRLKLNDKNLIAEVQ 339

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D   G  V  D  RL Q+   +LSNA+ FS+   T+ +         I  +++ G  IP
Sbjct: 340 LDE--GVVVNGDYGRLDQVIDNLLSNAIKFSANNRTIRISVVEVKTMGILKIEDEGVGIP 397

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+    +F RF  V  A   +  G GLGLSIV+  IN H G + I S     T +   IP
Sbjct: 398 EEDVPYIFERFYRVEKARTRKSGGTGLGLSIVQQIINKHEGKIHIDSKRGKGTVVTVEIP 457


>gi|303326644|ref|ZP_07357086.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862632|gb|EFL85564.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 683

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 131/253 (51%), Gaps = 15/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD +R +    EK  A+  A + K+ F+ H+S+E+R+P+  IIG T L   S     +
Sbjct: 291 DVTDLLRTQH---EKQAAV-IASQAKSEFLAHMSHEIRTPMNGIIGLTHLALQS---DPS 343

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y+  I +S+T LL ++NDILDL+ ++A  M L      + ++L+ V  SI   + 
Sbjct: 344 PEHKDYLHKIRSSATSLLAIINDILDLSKIEANKMVLENVNYTMEEVLDFVYTSIRFPLD 403

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  +  I  ++D        D  RL Q+   +LSNA+ F+SKGS V L+  R+N D    
Sbjct: 404 QKGLEYICEVADDVPLKLWGDGLRLKQVLLNLLSNAVKFTSKGS-VRLRIRRENSDSQDL 462

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
             F V + G  I  +  + +F+ +  +NA   +R  G GLGLSI +    L  G++   S
Sbjct: 463 LHFMVTDTGMGISREYQQHLFDPYTQANASIARRFGGTGLGLSICKRIAGLMRGNLWCES 522

Query: 777 SDEGVTTINCRIP 789
                +T +  IP
Sbjct: 523 EPGNGSTFHLSIP 535


>gi|299145321|ref|ZP_07038389.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298515812|gb|EFI39693.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 674

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 122/233 (52%), Gaps = 5/233 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q  
Sbjct: 431 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQQS 488

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++      + +
Sbjct: 489 YYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSLDNQ 548

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727
               +  +    V D QR+ Q+   +LSNA  F+ +G  T+      +    IFSV + G
Sbjct: 549 FLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTDTG 608

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             IP++    VF RF       Q  G GLGLSI +  ++   G + I     G
Sbjct: 609 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWRGSIWIDPDYTG 659


>gi|288957536|ref|YP_003447877.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909844|dbj|BAI71333.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 423

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 9/221 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K++F+  +S+ELR+PL  ++GF+++L T   G L N +   YV  I  + T LL L++DI
Sbjct: 177 KSAFLAQMSHELRTPLNAVLGFSEMLLTEAFGPLGNPRYRSYVGDIRDAGTHLLALIDDI 236

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFVADRQ 685
           L+L+ +D G M +    + L+ L   V  ++     E  +  R +V  D  L     D Q
Sbjct: 237 LELSRLDGGGMPMAAEGVDLDMLSLRVVTALREAAAEGGVIMRREVAPDLPL--LQGDAQ 294

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            L Q+ + +LSNA+  +  G  V+L A    +G     V + G  IP      + + F  
Sbjct: 295 SLTQMLTNLLSNAVTHTRPGGEVVLTAHLMPDGGIGVMVADTGVGIPTADLPRILDPFDP 354

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
                 R   G GLGL IV+  + +HGG + ++S   GV T
Sbjct: 355 PDSTIARNSCGTGLGLPIVKRLVEMHGGRMELTSQ-PGVGT 394


>gi|326202326|ref|ZP_08192195.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987444|gb|EGD48271.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 615

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 57/334 (17%)

Query: 442 HLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           H  EG+     +G I    +  FRS  +TE+        I  + A C  YY        F
Sbjct: 312 HFLEGI----RNGEIFDFISDTFRSGSETEQ-------KIFAVKANCEDYY--------F 352

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             I+T+  D   +L G + +                     F NVT              
Sbjct: 353 NIIVTTVKDNNANLSGIIAV---------------------FQNVTH------------- 378

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L++ ++I+  F+  +S+E ++PLT+I+  TD+L    +G+LN  Q Q ++ I   S  L
Sbjct: 379 -LKELEKIRTDFIATISHEFKTPLTSIVMGTDILSDEGVGNLNDDQRQIIKAIREDSDRL 437

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LVND+L+L  +++G          ++D++    +       + +  +    D  +   
Sbjct: 438 TKLVNDLLELTRIESGKAIFKIKEYAIDDIIECAVKPFYQIAEQQDKTLYFKCDEDMPRV 497

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVF 739
           +AD +++  + + ++SNA+ +++ G  + + A+ D  + ++ +VK+ G  IPE+   ++F
Sbjct: 498 IADFEKITWVLNNLISNALKYTNAGDEISVIASVDKENTMYVTVKDTGLGIPEEYIDNIF 557

Query: 740 NRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHV 772
            +FV       + RG GLGL++V+  I  H G +
Sbjct: 558 EKFVQVKDADFEVRGTGLGLAVVKEIIEAHHGRI 591


>gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
 gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
          Length = 587

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 170/355 (47%), Gaps = 36/355 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV     +G + ++NP    F   W  E+ +       R+         NE     L
Sbjct: 263 MADGVITLNRNGEVLITNPPADRFLQAWYYEQGQ-------RDDLLPLPPQVNE-----L 310

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   +T  +++ ++++  L+  +  ++   + PL N +       +  +V   R +TE+ 
Sbjct: 311 FKKAVT--EEKEQAIEMALQGRNWVIV---MTPLYNGKV------IRGAVAVLRDMTEE- 358

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ D+++  F+ +VS+ELR+P+  + G+++ +    + + + ++ +  + I   S  
Sbjct: 359 ---RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-VDDIAATDEEKKELAKVIYDESLR 414

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           +  LVND+LDLA ++AG + L++  + L   +  +         E  + + V ++D  + 
Sbjct: 415 MGRLVNDLLDLARMEAGHLMLHHEQVPLKPYVERIIHKFQALAKEKGVHLLVEMNDELIV 474

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           SF  D  R+ Q+ + ++ NA+  + +G  V +    D      SV+++GS IPE+    V
Sbjct: 475 SF--DPDRVEQVLTNLIDNALRHTDEGGEVRVIVDADEEVVRISVQDSGSGIPEEDLPFV 532

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF     A    R G GLGL+I ++ +  H G +++ S     TT    +P K
Sbjct: 533 FERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTITVHSKLGEGTTFTFTLPLK 587


>gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1691

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 15/253 (5%)

Query: 551  AERALTEKNEALRK-----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            AE  L  +   LRK      +  K+ F+  +S+E+R+PL  I+G  +LL  S   +L+S+
Sbjct: 1292 AELELATREAELRKDEAEAGNRAKSEFLAIMSHEIRTPLNAILGTHELLSES---ALSSE 1348

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q + +E    +  +LLNLVN+ LDLA ++AG + L Y+   L  L+ E+ Q         
Sbjct: 1349 QQRLMEISRNAGELLLNLVNETLDLAKIEAGKLDLEYTIFDLPRLVEEITQIKRVAAEHK 1408

Query: 666  NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSV 723
             +R++     ++  FV  D  RL QI   +LSNA+ F++ G TV L+ +R   D   F V
Sbjct: 1409 GVRLESEMALEVPRFVMGDPDRLRQILVNLLSNAIKFTNSG-TVSLQMSRGVADRTFFKV 1467

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780
             + G  I     + +F+ F        R+  G GLGL+I +      GG + + S    G
Sbjct: 1468 SDTGVGIAAHSMEKIFHPFTQADTSTTRKFGGTGLGLTICKHLCEAMGGDIQVESQVGVG 1527

Query: 781  VT-TINCRIPSKE 792
             T ++N  +P  E
Sbjct: 1528 STFSVNLPLPRAE 1540



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 120/238 (50%), Gaps = 14/238 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  +  ++L E   A   A + K++F+ ++S+E+R+P+  ++GFTDL   +  G L+
Sbjct: 378 DITDKKQLLKSLEETLSAAESASKAKSAFIANMSHEIRTPMNAVLGFTDL---ALRGDLS 434

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K   Y+E    +S  L+ ++NDILD + +D G ++L+     L+ LL  +    + +  
Sbjct: 435 PKVRDYLEKTKNASHSLMGIINDILDFSKMDVGRLELDPVKFDLHFLLERLADLFSKQAA 494

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDN 716
           ++ + +  ++       +  D  RL QIF  ++ NA+ F+  G   +      L+  R  
Sbjct: 495 DHAVDLVFLAPLNFNQVLYGDAMRLEQIFINLIRNAVKFTKNGFITVRAQPELLEGHRVR 554

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                SV ++G  I  +    +F  FV       RR  G GLGLSIV+  ++L  G V
Sbjct: 555 --LTCSVSDSGIGIDPEQLPHLFAPFVQADSSTTRRFGGTGLGLSIVKRLVSLMDGSV 610


>gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 828

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 158/345 (45%), Gaps = 23/345 (6%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +SEGV     DGRI   N +   L    E  +  G HI  +      + +  DG  +  A
Sbjct: 158 MSEGVFEVTADGRITYVNSSALLLTGLPEKSVY-GVHIAEL------FPHRDDGGRMRVA 210

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQTMLTFVNVTDSVRAERALTEKNE 560
           +    +      + +  +L+   +  SI+PL +  +   +   ++T+  R E+AL E  E
Sbjct: 211 LDRLGEVPLTMGEDSPLVLNHRQVSVSILPLNDETSSAAVILTDITERKRVEQALIEAKE 270

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               A + K+ F+ ++S+E+R+P+  +IGFTD+L  +    L   Q  Y      S   L
Sbjct: 271 RAETASQTKSHFLANMSHEIRTPMNAVIGFTDMLLDT---DLTDDQRDYAMTAKKSGESL 327

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLN-DLLN-EVKQSIATKMHENNIRIKVISDGKLG 678
           L+L+NDILD + ++AG  +LN+  I  + +LL+ +V + I  ++    + I       + 
Sbjct: 328 LSLLNDILDFSKIEAG--ELNFEKIDFDPELLSYDVCEVIRPRVESKPVEILCHVGADVP 385

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPED 733
           SFV  D  R  Q+   ++SNA  F+  G    S  +     D   F  +V++    IPED
Sbjct: 386 SFVKGDPGRYRQVLVNLMSNATKFTESGEIELSLDVEAEEADRIKFHATVRDTAMGIPED 445

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F+ F        R+  G GLGL++         G V + S
Sbjct: 446 KLSLIFDPFQQADGSMTRKYGGTGLGLTVCRQLSRFMDGDVWVES 490


>gi|317051142|ref|YP_004112258.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
            indicum S5]
 gi|316946226|gb|ADU65702.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum
            S5]
          Length = 1150

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 111/217 (51%), Gaps = 5/217 (2%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+ +K+ F+ ++S+ELR+PL  IIG++++L+         +  Q +E +  +   LL ++
Sbjct: 917  ANRVKSQFMANMSHELRTPLNAIIGYSEMLQEEYRSDPQGQIYQDMERVQKAGRQLLQII 976

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            NDILD+A +++   +L   +  +     +V QS+   +H+N   + V  D  +G+  +DR
Sbjct: 977  NDILDMADLESQTAQLQAESFDICSEARQVAQSVQAAIHKNGNTLDVRCDENIGTMYSDR 1036

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNR 741
            Q++ Q+   +L+NA  F+  G   +  +A         +  V++ G  I   + + +F  
Sbjct: 1037 QKIRQVLIHLLNNAGRFTENGQVALTVSAEQRHSEPWVLLRVRDTGIGIDPSIHEQIFEP 1096

Query: 742  FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            F        R   G GLGLSI   F  + GG +++ S
Sbjct: 1097 FTLGDSSSTRLYGGSGLGLSISRRFCEMMGGAITLQS 1133


>gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS
           and HAMP domains [Synechococcus sp. PCC 7002]
          Length = 1280

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++TD V AE  L    E   +A+  K+ F+  +S+E+R+P+  +IG  +LL+ +   
Sbjct: 703 TITDITDKVEAEIQLKLAKEDAEQANRAKSEFLATMSHEIRTPMNAVIGMAELLRDT--- 759

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q ++++ I  S + LL ++NDILD + +++G  +L      L   L      ++T
Sbjct: 760 DLTAQQQEFIDIIRNSGSNLLAIINDILDFSKIESGKFELELQPFNLQTCLENCLDLMST 819

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
           +     I +  I D  +    + D  R  QI   +L NA+ F+++G   +    +  A  
Sbjct: 820 RAIAKPIYLSYILDPDVPHHLMGDVTRFQQIMLNLLGNAVKFTNRGDVSLWVQKVPTATG 879

Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           +GD +   F++ + G  IP      +F  F        RR  G GLGL I +  + L GG
Sbjct: 880 DGDQVCLRFAILDTGIGIPAQQMTRLFQPFSQGDASTSRRYGGTGLGLVISKRLVELMGG 939

Query: 771 HVSISS 776
            + + S
Sbjct: 940 KLWVES 945


>gi|91202023|emb|CAJ75083.1| hypothetical histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 545

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 131/257 (50%), Gaps = 20/257 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  E ++ L + D +K+ F+ ++S+ L++PLT I    +L+     G ++ +Q + +  
Sbjct: 280 RSFNEMSKKLEQLDTMKSDFISNISHNLKTPLTAIKEANELMLDKIAGQISFEQMKLLNI 339

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++  L+ ++ND+LD++ ++AG+M+ N+    + D+++E  + +     +  I I+  
Sbjct: 340 IKGNTLRLILMINDLLDISRIEAGLMRYNFQPAQIRDVISESIEDVRFLTEKKGIFIQYE 399

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------------ 720
            D  +   + DR ++ QI   +LSN++ F+  G  + +KA   +   +            
Sbjct: 400 DDSLVPHVLLDRGKIAQIMDNLLSNSIKFTPTGGVITIKAFVVDASMLSPIFAQQGKLNN 459

Query: 721 ------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                  S+ + G  IP++   S+F++F  V N      +G GLGL I +  +  HGG++
Sbjct: 460 IQSFLQISISDTGIGIPKEHQNSIFDKFQQVVNKRESGIKGTGLGLFIAKHIVEDHGGNI 519

Query: 773 SISSSDEGVTTINCRIP 789
            + S+    +T +  +P
Sbjct: 520 WLESNCGSGSTFHFTLP 536


>gi|71275082|ref|ZP_00651369.1| PAS [Xylella fastidiosa Dixon]
 gi|71163891|gb|EAO13606.1| PAS [Xylella fastidiosa Dixon]
          Length = 558

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++ERA   +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +  +   
Sbjct: 293 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 345

Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662
           Y  +  I++S+ +   L++D+LDL+++  G M+L    + L + + EV    +Q + +K 
Sbjct: 346 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 405

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               +R   +    LG    D  RL QIF  +LSNA+ F+     + ++   D   F  S
Sbjct: 406 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 461

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I  +    +F+RF        R   G+GLGL+IV+S + +HGG+V  +S   G
Sbjct: 462 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 521


>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1135

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T    AE+AL E  +A   A+  K+ F+ ++S+E+R+PL  IIG T+L+  +    L 
Sbjct: 404 DITPMKLAEQALREAKDAAEAANRAKSDFLANMSHEIRTPLNAIIGMTELVMDT---DLK 460

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  Y+  +  S   LL ++NDILD + ++AG + ++     L D L +  +S++ + H
Sbjct: 461 VAQRDYLRMVLESGESLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNRAH 520

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGD 718
              + +   +S         D  R+ Q+   +L NA+ F+ +G  V    +     +   
Sbjct: 521 RKKLELAFHVSPDVPDEVRGDAVRVRQVIINLLGNALKFTERGEVVLDVSVESRTAEQVT 580

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I +D  +S+F  F        RR  G GLGL+I    + L  G + + S
Sbjct: 581 LHFKVQDTGIGIAKDKFESIFEAFEQADSSTTRRYGGTGLGLAISARLVELMQGKIWVES 640


>gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
 gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
          Length = 1521

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 125/240 (52%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T    AE  L    E   +A++ K++F+ ++S+ELR+P+  I+G   LL+ +    L+
Sbjct: 745 DITQQREAENILKTARETAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLD 801

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ+ Y     A++  LL+L+NDILD + +++G M L      ++ +L ++   +++ + 
Sbjct: 802 RKQADYAVKSEAATRTLLHLLNDILDFSKIESGKMALECIPFDIHVMLRDLAVILSSNLK 861

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI- 720
              + +    D  L  FV  D  RL QI + +  NA+ F+  G  V+ +K    +   + 
Sbjct: 862 VKKVEVLFDIDPALPQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHVT 921

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I  +  +S+F+ F        RR  G GLGL I + F+ L GG +++ S
Sbjct: 922 LHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLALES 981


>gi|302851080|ref|XP_002957065.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f.
           nagariensis]
 gi|300257621|gb|EFJ41867.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f.
           nagariensis]
          Length = 2041

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 4/233 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + LR A   K+ F+  +S+ELR+PL  II  +D L     G +N K   +V+ I  SS  
Sbjct: 265 QELRDAVTRKDQFMSLMSHELRTPLNGIIQLSDALVRGAGGEMNPKGQHFVKTIKNSSNH 324

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN++NDILD+A +  G + + +    L   +  V   +A  +   ++ I+   D     
Sbjct: 325 LLNIINDILDVAALKEGKLTIKHELCSLAKAVEHVVDIVA-PLARKDVAIERSVDPHTPL 383

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            +AD  R++QI   +  NA+ F+ +G   + +  + D       V + G  IP +    +
Sbjct: 384 IIADFSRVIQILYNLAGNALKFTHRGRVCVRVSPSADGSSVTLQVADTGIGIPPERISGI 443

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  F        R+  G GLGL+IV+  +  H G + + S++   TT    +P
Sbjct: 444 WGAFEQVDMSVTRKYGGTGLGLNIVKQLVEAHEGKIEVQSAEGRGTTFTVTLP 496


>gi|289677061|ref|ZP_06497951.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae FF5]
          Length = 654

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|222474959|ref|YP_002563374.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Florida]
 gi|222419095|gb|ACM49118.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Florida]
          Length = 474

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 162/347 (46%), Gaps = 28/347 (8%)

Query: 465 SLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           SL + +   L+ G  +R + A     T      + DG  +F  +I ++    ++L+G   
Sbjct: 128 SLSEAQLAALANGDVLRGVVADGRIFTVFPIVLQDDGPKVFLQVIKNYGKLSQALRGVHG 187

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT----------EKNEALRKADEIK 569
           +L        +IP+  A      + V    R+ R L+          E+ E   +    K
Sbjct: 188 ML--------VIPVGVAILSCVCLVVLFYRRSARLLSSQYDANLELQEQKETAERESVSK 239

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDIL 628
           + F+ +VS+ELR+PL +IIGF++++++  LG + S++  +Y+  I  S   LL+L+NDIL
Sbjct: 240 SQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLINDIL 299

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D +  +A  + + +    L  +++     +  +  +  + +K     +    +AD +R+ 
Sbjct: 300 DFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADPKRMK 359

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP-EDMCK--SVFNRFVSN 745
           Q+   +LSN++ F+ +G  V L A       I  + + G  I  +D+ K  SVF +   +
Sbjct: 360 QVIINVLSNSVKFTPEGGLVKLCAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFGQ-ADS 418

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            H  +  G GLGL + +  + L  G  SI S     T +    P K+
Sbjct: 419 THSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 465


>gi|254255395|ref|ZP_04948711.1| Response regulator receiver [Burkholderia dolosa AUO158]
 gi|124901132|gb|EAY71882.1| Response regulator receiver [Burkholderia dolosa AUO158]
          Length = 739

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 157/353 (44%), Gaps = 44/353 (12%)

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGWDLFAAIITSFD 508
           GP+ RI L+N  F +L           T I  R +A+          G D   AI  + D
Sbjct: 237 GPEHRIVLANHRFSALCGR--------TDIVDRPLASVLP-------GGDT-PAIARALD 280

Query: 509 DERKSLQGTL------ELLSDSVLEYSII--PLPNAQ---TMLTFVNVTDSVRAERALTE 557
           D R S + T           D    Y +   P P A     +++ V VT+ V A   L  
Sbjct: 281 DARTSGRSTTIGEHRDRASGDGARVYRLHFNPQPQADGFGVIVSAVEVTEHVAAREKLVA 340

Query: 558 KN-------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            N       + LR+A+  K+ F+  + +ELR+PLT I    +L++              +
Sbjct: 341 ANAERDRLLDELREANHAKDQFLAVLGHELRNPLTPISLALELIRNRD----GHATPNEL 396

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I      ++ L++D+LD++ +  G ++L    + L D+++   +  +  + +   R+ 
Sbjct: 397 AIIQRQLDHMVRLIDDLLDVSRITRGKIELKKEVVRLADIVDRAVEVASPLLEQRRHRLH 456

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSS 729
           V +   L     D  RL Q+ + +L+NA  ++  G  + L+ AR D  D +  V++NG+ 
Sbjct: 457 VDAALDLHCH-GDPVRLSQVVANLLTNAAKYTPPGGEIALRVARGDTDDVLVEVRDNGAG 515

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           IP D   S+F  F  +         G+G+GL++V SF+ LHGG V   S   G
Sbjct: 516 IPRDRLDSIFEPFFRIDGGSSHMHGGLGIGLALVRSFVRLHGGTVRADSEGLG 568


>gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 847

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 18/243 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V A R L    +   +A   K++F+  +S+E+R+P+  +IG T LL+ + L   + +Q Q
Sbjct: 313 VVARRELAAARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLEATDL---DERQRQ 369

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E +S+++  L+ ++NDILD + V+AG + L      L  ++ EV + IA       + 
Sbjct: 370 YAEGVSSAANALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEVAELIAEPAQSKGLE 429

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD------ 718
           +      +L + +  D  RL Q+   + SNA+ F+++G  ++   L+A+  +G       
Sbjct: 430 LLAYCSPELPTCLRGDPSRLRQVLLNLASNAVKFTARGEVLVRASLEASLQDGPEAGAEA 489

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F V + G  + E   + +F  F        RR  G GLGL+I E  +   GG + 
Sbjct: 490 GVVVRFEVTDTGIGVEEADRERLFEPFSQADSSTTRRYGGTGLGLAISEHLVTAMGGQIG 549

Query: 774 ISS 776
           + S
Sbjct: 550 VDS 552


>gi|116625704|ref|YP_827860.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228866|gb|ABJ87575.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 1134

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 12/244 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AER    + EAL + D  K +F  +VS+ELR+PLT ++   + L   +  + + +Q   +
Sbjct: 342 AER---RRAEALAEIDRAKTTFFSNVSHELRTPLTLMLSPVEELLAQERTAADPEQRHLL 398

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  +   L  LVN +LD + ++AG ++  Y    L     E+  +  + M +  +  +
Sbjct: 399 ELVHRNGLRLQRLVNTLLDFSRIEAGRVRAVYEPTDLAHYTAELAANFRSAMEKAGLEFR 458

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI-FSVKNNG 727
           V   G+L + V  DR    +I   +LSNA+ F+  GS TV L+ A   G+F+   V++ G
Sbjct: 459 V-ECGELSAPVYVDRDMWEKIVLNLLSNALKFTFTGSVTVRLRTA---GEFVELVVQDTG 514

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      VF RF  VS A      G G+GL++V+  + LH G + + S     TT  
Sbjct: 515 IGIPSAELPRVFERFHRVSGAKGRTIEGTGIGLALVQELVKLHAGSIEVESELSRGTTFQ 574

Query: 786 CRIP 789
            ++P
Sbjct: 575 VKLP 578



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 5/248 (2%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+  + E  +   NE LR+A+     F    S++L+ PL  +  ++ LL       L+
Sbjct: 883  DITERKKQEELIRRSNEELRRANADLEQFAYSASHDLQEPLRQVAIYSQLLGRKYGSRLD 942

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV-LNDLLNEVKQSIATKM 662
             K S+Y+ Y    +  +  L++D+L  +              V  N  L  V++++AT +
Sbjct: 943  GKASEYLTYCIEGAQRMEMLISDLLAYSQATKTSNPSAEPEFVDANGALEAVRKNLATTI 1002

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF 721
             E      VI+   L     D   L+ +F  ++SNA+ +  K    V + A +D+G + F
Sbjct: 1003 EETR---AVITAAHLPVVHGDGVPLMHVFQNLISNALKYRGKERPDVRIWAEQDSGWWRF 1059

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +V++NG  IP+   + VF  F     R    G G+GL+I +  +  +GG + + S     
Sbjct: 1060 AVQDNGIGIPKPYQEQVFGIFKRLHDRKDYPGTGIGLAICQRVVERYGGKIWVESDGRQG 1119

Query: 782  TTINCRIP 789
            +T    +P
Sbjct: 1120 STFFFTLP 1127


>gi|330806709|ref|YP_004351171.1| alginate biosynthesis sensor protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374817|gb|AEA66167.1| Putative alginate biosynthesis sensor protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 596

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 154/340 (45%), Gaps = 23/340 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +D + +G+ +    G+++  NP  +     +E RL  G     +     R   + +   
Sbjct: 264 VLDSIDDGLLMIDRQGQLEHLNPVAQRQLGWDEERLGQG-----LGEALGRLELDEE--- 315

Query: 499 LFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556
               ++     ER     ++E+  +S VL YS+ P+ + Q  +L  V V   V  +RA  
Sbjct: 316 -LHLVLRGGSLERAPEDLSIEVDGESRVLTYSLTPVSHTQGHILGAVMVLHDVTEQRAF- 373

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                    + +++ FV   S+ELR+P+T +     LL+     S  S+++  +  ++  
Sbjct: 374 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFSEESREADLLNTVTEE 424

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L+ L+ND+L+ +    G+ KL  +   +++LL   +   A +     I + V   G 
Sbjct: 425 MQRLMQLINDLLNFSRYQNGLQKLTLAPCSIDELLEAARLRFAEQAQTKGIELLVAIQGP 484

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L    AD  +L ++   ++ NAM  +++   + L+A R     I SV++NG  I      
Sbjct: 485 LPRLHADAAQLDRVLDNLIDNAMRHTAENGQIRLQARRHGERVIISVEDNGEGIAYGQQG 544

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F  FV    +  + G GLGL++ +  + LHGG + + S
Sbjct: 545 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYS 582


>gi|289648121|ref|ZP_06479464.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866044|gb|EGH00753.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 917

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 275 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 330

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 391 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 448

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 449 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497


>gi|153828803|ref|ZP_01981470.1| sensor histidine kinase FexB [Vibrio cholerae 623-39]
 gi|148875679|gb|EDL73814.1| sensor histidine kinase FexB [Vibrio cholerae 623-39]
          Length = 785

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVKVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|54302218|ref|YP_132211.1| two-component sensor [Photobacterium profundum SS9]
 gi|46915639|emb|CAG22411.1| hypothetical two-component sensor [Photobacterium profundum SS9]
          Length = 680

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 11/222 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  IIG + LL+   +      Q +Y++ ++ SS  LL+L+NDIL
Sbjct: 77  KSEFLANMSHEIRTPMNGIIGLSSLLQEMDMPK---DQKEYIQMLNISSLSLLDLINDIL 133

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D + ++AG ++L ++++ L +L  EV+     K  E +I  +   D ++    + D  +L
Sbjct: 134 DFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGDATQL 193

Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+ + ++SNA+ F+  G     T +           F V ++G  +  D  ++VF++F 
Sbjct: 194 RQVLNNLVSNAIKFTHTGYVHLHTQLETDTDTETTIRFEVIDSGIGVSADKHEAVFDKFQ 253

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
                  R+  G GLGLSI    ++L GG + ISS  D+G T
Sbjct: 254 QADGSTTRKYGGTGLGLSICRQIVHLMGGEIKISSEVDKGST 295


>gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
 gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
          Length = 1186

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 135/283 (47%), Gaps = 31/283 (10%)

Query: 523  DSVLEY----SIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALR-------------- 563
            D VLE      II     Q +LT + ++T   R E  L + N+ L+              
Sbjct: 749  DEVLELLFSGEIIESQGQQFILTVMTDITVQKRVEEELVKTNQKLQESMDKANKMAVKAE 808

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            KA+E+K+ F+ ++S+E+R+PL  I+G+T+LL    L   N K+  Y++ I ++   LL+ 
Sbjct: 809  KANELKSQFLANMSHEIRTPLNIIMGYTELL-AKDLEEDNYKR--YIKSIRSAGDSLLDQ 865

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            VNDILD++ ++AGI+++NY  I L  LL  +    A K+    +  ++  D        D
Sbjct: 866  VNDILDMSKIEAGIIEINYEYIDLAALLENITAIFADKVKAKGLDFQLKMDNLPPLVKMD 925

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCK 736
              R  QI   +L NA+ F+  G   I    R       +N      V++ G  I  +  +
Sbjct: 926  EFRFRQIMINLLDNAVKFTKSGHIFIGVYCRPVSGKGNNNIKLRIIVQDTGIGIKAEKQE 985

Query: 737  SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +F  F        R   G GLGLSI    +++  G +S+ S+
Sbjct: 986  EIFKAFSQENAESTREFGGTGLGLSITRRLVDMMDGQISLQST 1028


>gi|256044286|ref|ZP_05447190.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113119|ref|ZP_05453996.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 3 str. Ether]
 gi|260563640|ref|ZP_05834126.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260153656|gb|EEW88748.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M]
          Length = 609

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 329 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 388

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 389 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAV 448

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 449 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 507

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  +  H G + + S     T +  R+P
Sbjct: 508 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 556


>gi|224368990|ref|YP_002603154.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
 gi|223691707|gb|ACN14990.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
          Length = 701

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 15/260 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V D  R  R L+   E L+++   K  F+  +S+E+R+PL++I+G+TD+L  +    L 
Sbjct: 155 KVLDLGRTNRELSVAMEGLKESSRAKGDFLARMSHEIRTPLSSIMGYTDILFDT---CLA 211

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ YV  I  S  +LL +VND+LD + V++G + L+        L  E  + + T++ 
Sbjct: 212 PEQTDYVTNIKKSCDVLLGIVNDVLDFSRVESGEIGLDPIEFDPEVLCFECLEMVRTQVD 271

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGD 718
            + + +   I D   G   AD  R  Q+   +L NA  F+  G    S  + +  +    
Sbjct: 272 TSRVELLCRICDCVPGCVRADPNRFRQVLLNLLGNAAKFTVNGVIELSLKVKEKTKTGIV 331

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ----RRGVGLGLSIVESFINLHGGHVSI 774
              SV++ GS IP      +F  F     RG+     RG+GLGLSI        GG++++
Sbjct: 332 LCASVRDTGSGIPTAALGVIFKPF-QQVVRGRIAKGLRGMGLGLSICRKIARRMGGNITV 390

Query: 775 SSSD-EG-VTTINCRIPSKE 792
            S + EG V T + R+   E
Sbjct: 391 ESREGEGSVFTFSSRVEPVE 410


>gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 774

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 128/247 (51%), Gaps = 18/247 (7%)

Query: 558 KNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           K+EA+     K    K+ F+  +S+E+R+P+  I+G  ++L  S L   + +Q ++VE +
Sbjct: 252 KSEAMAVEAAKGTRAKSQFLAAMSHEIRTPMNAILGMAEILADSHL---DDEQRRFVEIL 308

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             S   LL+L+N+ILDL+ ++AG +      + L+ ++ +  +  A   H   + +   I
Sbjct: 309 QESGESLLHLINEILDLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAHAGHGKGLELAYNI 368

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFI---FSVK 724
           +       + D  RL QIF  ++ NA+ F+ +G     ++++     DNG  +   F+VK
Sbjct: 369 NRDVPVQLMGDPSRLQQIFVNLIGNAIKFTERGFVVVETSLVQPDMADNGGSLKIHFAVK 428

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I +D   S+F+RF        R+  G GLGLSI +S     GG + + S     T
Sbjct: 429 DSGIGIEDDKLDSIFDRFTQADSSTTRKYGGTGLGLSICKSLCEAMGGKIWLESRKGFGT 488

Query: 783 TINCRIP 789
           T++  +P
Sbjct: 489 TVHMELP 495


>gi|94266984|ref|ZP_01290632.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
 gi|93452318|gb|EAT02952.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
          Length = 875

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 119/267 (44%), Gaps = 34/267 (12%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L +    K+ F+  +S+E+R+PL  IIGF++L     L   +    QY+E I 
Sbjct: 446 LLTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNL----ALEGGSQPPRQYLEMIK 501

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L+N ILDLA +++G ++L        + + +  +  A    +  +      D
Sbjct: 502 TAGDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSID 561

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD-------------- 718
             + G  V D  RL Q+   ++ NA+ F+ +G  V+ ++ A D+ D              
Sbjct: 562 PAVPGEVVGDPARLTQVLVNLVGNALKFTEEGEIVVSVRPAADDADRRPTVGAGRAEVAP 621

Query: 719 ----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                       F+V+++GS I  +    +F RF          G GLGL+I  S + L 
Sbjct: 622 PAASDATSGLLHFTVRDSGSGIAAEQQGRIFTRFAQGEGASPHGGHGLGLAIAASLVELM 681

Query: 769 GGHVSISS-SDEGVT---TINCRIPSK 791
           GG + + S   EG +   TI  R+P  
Sbjct: 682 GGEIWLESRPGEGSSFHFTIAYRLPPP 708


>gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 1397

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 12/243 (4%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            F N     R E AL +   A   A+  K+ F+ ++S+E+R+P+  +IG T LL  +   S
Sbjct: 846  FTNAELRYRHETALLDARLAAEAANRAKSEFLANMSHEIRTPMNGVIGMTRLLLNT---S 902

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L  +Q  + +   AS   LL ++NDILD + ++AG ++L   +  L  LL++    +A K
Sbjct: 903  LAEEQRSFAQTALASGESLLTVINDILDFSKIEAGKLELEEISFDLRLLLDDFAAIMAVK 962

Query: 662  MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
              +  +      + D  +  F+ D  R+ QI + +  NA+ F+ KG   +    L+   +
Sbjct: 963  AGDKGLEFICAALPDVPV-RFIGDPDRIRQILTNLAGNAVKFTHKGEVAVYVSLLRETDE 1021

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 FSVK+ G  IP +    +F  F        R+  G GLGL+I    + L  G + 
Sbjct: 1022 EVLVRFSVKDTGIGIPREKLDRLFRSFTQVDASMTRKYGGTGLGLAISRQLVELMSGEIG 1081

Query: 774  ISS 776
            ++S
Sbjct: 1082 VNS 1084


>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
 gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
          Length = 1513

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 33/265 (12%)

Query: 544  NVTDSVRAERALTEKNEALR--------------KADEIKNSFVQHVSYELRSPLTNIIG 589
            +++D V  E  L E N  L               +A+  K+ F+ ++S+E+R+P+  I+G
Sbjct: 823  DISDRVETEARLQEANRRLEEQTALARSMALQADQANRAKSDFLANMSHEIRTPMNGILG 882

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               LL  +    L  +Q  + E + AS+  LL L+NDILDL+ ++AG + L      L  
Sbjct: 883  MAALLLDT---DLTPEQRHFGEIVQASAENLLGLLNDILDLSKIEAGRLALEEVDFDLRS 939

Query: 650  LLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L ++V  ++A +     +  +  +      +   D  RL Q+ + +L NA+ F+ +G  V
Sbjct: 940  LFDDVGAALAAQAQAKGLEFLGSVEPDVPSALRGDPGRLRQVLTNLLGNAVKFTHRGE-V 998

Query: 709  ILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGL 758
            +++A R     +     FSV++ G  IP D    +F +F      +  H G   G GLGL
Sbjct: 999  VVRARRVSESPERVQVRFSVRDTGIGIPADKVDLLFQKFTQADASTTRHYG---GTGLGL 1055

Query: 759  SIVESFINLHGGHVSISSSDEGVTT 783
            +I ++ + L GG + + S  EGV +
Sbjct: 1056 AISKNLVELMGGEIGVHSR-EGVGS 1079


>gi|255974458|ref|ZP_05425044.1| sensor histidine kinase [Enterococcus faecalis T2]
 gi|255967330|gb|EET97952.1| sensor histidine kinase [Enterococcus faecalis T2]
          Length = 398

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S     +  +  Y+ A    LL
Sbjct: 162 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 221

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             V+D+ +   V    + ++ +T  +  L+ ++      +  + N++I+V ++       
Sbjct: 222 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 279

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L+++F+ +LSNA+ +   G  ++++  +   + I +V+N+G +IP+     +F+R
Sbjct: 280 GDTEKLIRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 339

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGL+I +S + LHGG++  + SD+  T+    +P
Sbjct: 340 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 388


>gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1424

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 128/254 (50%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 843  QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSHNLTPKQVEY 902

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M ++   + L  LL+ V+ +      + ++  
Sbjct: 903  AGIIHSAGSDLLQLINDILDLSKVEAGKMDISPERVALRRLLDYVEATFRPMTSQKSLEF 962

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDF 719
             +  + G     + D  RL Q+   +LSNA+ F+ +G   +         + AA   G  
Sbjct: 963  TMSTAPGVPVDLLTDDSRLRQVLRNLLSNAVKFTERGGVGLHIEPAVDQNIPAAVHRGGA 1022

Query: 720  I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            +  F VK+ G  IPE   +++F  F        R+  G GLGLSI     +L GG V++ 
Sbjct: 1023 VVAFHVKDTGIGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 1082

Query: 776  SSDEGVTTINCRIP 789
            S+    +T    +P
Sbjct: 1083 STPGQGSTFTLYLP 1096


>gi|90961188|ref|YP_535104.1| two component system histidine kinase [Lactobacillus salivarius
           UCC118]
 gi|90820382|gb|ABD99021.1| Two component system histidine kinase [Lactobacillus salivarius
           UCC118]
 gi|300214111|gb|ADJ78527.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 383

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ ++ E  R  DE+    + +VS+++R+PLT+IIG+  L++  +  S      +Y   
Sbjct: 140 KAMEDEREIERSKDEL----ITNVSHDIRTPLTSIIGYLGLIEDKQYRS-EEDILKYTHT 194

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S  + +LV+D+ +   V      L   ++ LN +L ++  S   + ++  + I  I
Sbjct: 195 AYLKSKQMKSLVDDLFEYTKVRQTDAPLQIQSLELNAMLEQIGASFELEANKKGMEINTI 254

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIP 731
                    AD ++L ++F+ +++NA+ + S G  + L+  + D  +    + N+G  IP
Sbjct: 255 LPDSPVKIEADPEKLARVFNNLITNALKYGSDGKNIYLQLTKVDEKEIEIRISNDGEPIP 314

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E   + VF+RF  V ++   +  G GLGL+I +S I LH G++ +  S++ +T+   R+P
Sbjct: 315 EKSLRQVFDRFYRVESSRSKETGGTGLGLAIAQSIIELHHGYIYV-ESNKNLTSFIMRLP 373

Query: 790 SK 791
            K
Sbjct: 374 IK 375


>gi|82471109|gb|ABB77560.1| ETR1 type ethylene receptor [Ziziphus jujuba]
          Length = 738

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 135/264 (51%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARNLLIEQNVALDLARREAETAIRARNDFLAVMNHETRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               ++Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ +  EV   I 
Sbjct: 375 ---TAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHSVFREVHNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI------LKA 712
                  + + +     L  + V D +RL+QI   ++ NA+ FS +GS  +      +++
Sbjct: 432 PVASVKKLMVMLNLAPDLPVYAVGDEERLMQILLNVVGNAVKFSKEGSISVAAFVAKVES 491

Query: 713 ARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD    DF              VK++GS I P+D+ K +F +F        R   G GL
Sbjct: 492 LRDFRAPDFFPMPSDCHFYLRVQVKDSGSGISPQDIPK-LFTKFTQTQPLATRNSGGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 551 GLAICKRFVNLMEGHIWIESEGLG 574


>gi|17987640|ref|NP_540274.1| histidine protein kinase DIVJ [Brucella melitensis bv. 1 str. 16M]
 gi|17983351|gb|AAL52538.1| histidine protein kinase divj [Brucella melitensis bv. 1 str. 16M]
          Length = 435

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 155 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 214

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 215 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAV 274

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 275 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 333

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  +  H G + + S     T +  R+P
Sbjct: 334 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 382


>gi|147825347|emb|CAN73257.1| hypothetical protein VITISV_002135 [Vitis vinifera]
          Length = 741

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 134/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS++L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 375 ---TPEQRLMVEAILKSSSLLATLINDVLDLSRLEDGSLQLENGTFNLHALFREVLYLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + +       L  F   D +RL+QI   ++ NA+ FS +G+  I       ++
Sbjct: 432 PIASVKKLFVSSSLAPDLPEFAFGDEKRLMQIMLNVVGNAVKFSKEGNISIFAFIAKSES 491

Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD+   DF              VK++G+ I P+D+ K +F +F        R   G GL
Sbjct: 492 LRDSRTPDFFPVHSDNHFYLRVQVKDSGAGIDPQDISK-LFTKFAQCQSLAARNSGGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL GGH+ I S   G
Sbjct: 551 GLAICKRFVNLMGGHIWIESEGLG 574


>gi|148979130|ref|ZP_01815338.1| Probable sensor/response regulator hybrid [Vibrionales bacterium
           SWAT-3]
 gi|145961996|gb|EDK27285.1| Probable sensor/response regulator hybrid [Vibrionales bacterium
           SWAT-3]
          Length = 572

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 12/261 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTD 592
           +Q +L    +  ++  + A+    E+ ++A+E + +   FV  +++ELR+PL  ++G  +
Sbjct: 169 SQLLLVTDLICSAITHQLAINRNIESRKRAEESERATRDFVAMINHELRTPLNGLLGSAE 228

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+  ++L   NS Q + V  +S S   L  ++ND+LD + ++AG+++L      L+DL N
Sbjct: 229 LISDTEL---NSSQREIVNNLSQSGEFLRTIINDLLDYSKINAGMLELIPKKFSLHDLRN 285

Query: 653 EVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            ++     +  E  +   I V SD     F  D +R+ Q+F  ++ NA+ F+ +G  V +
Sbjct: 286 TIESIFTNRAIEKQLDFNISVASDVP-SHFKGDLERITQLFVNLIGNAIKFTEEGH-VNV 343

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                +  F+FSV++ G  I E   K++F  F    +   R   G GLGL+I    + L 
Sbjct: 344 DIEWSDQHFVFSVEDTGVGIAESAYKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVGLM 403

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G + ++S     TT    +P
Sbjct: 404 DGDIGVTSIVGSGTTFTISVP 424


>gi|109898976|ref|YP_662231.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109701257|gb|ABG41177.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 662

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 125/243 (51%), Gaps = 10/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F ++T+ V +   L  +++ L  A E ++ F+ ++S+E+R+P+  ++G   +L  S   
Sbjct: 261 AFQDITEQVNSREQLEHRHKELSLALEARSLFLANMSHEIRTPINGVLGMLQILDAS--- 317

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL+++Q +++     S+T LL ++NDILD   +D+G + L    I LN +LN        
Sbjct: 318 SLDNEQRRFLGLAKDSATSLLGIINDILDFTKIDSGKLALETVPIDLNQVLNNCVDIFNP 377

Query: 661 KMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARD 715
              E +I+ +K + + +  S + D  RL QI + +LSNA+ F+ +G    +T +    + 
Sbjct: 378 HAKEKSIQLVKQLENTQGASIITDPTRLRQICANLLSNALKFTHQGQVNIATELTLLKKG 437

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                  VK++G  + ++    +F+ F        R+  G GLGLSI      L  G VS
Sbjct: 438 KATLTIFVKDSGVGMTQEQQALLFSPFSQADVSTTRKFGGTGLGLSITRKLCQLMSGDVS 497

Query: 774 ISS 776
           + S
Sbjct: 498 VKS 500


>gi|153952802|ref|YP_001393567.1| sensory transduction histidine kinase [Clostridium kluyveri DSM
           555]
 gi|219853467|ref|YP_002470589.1| hypothetical protein CKR_0124 [Clostridium kluyveri NBRC 12016]
 gi|146345683|gb|EDK32219.1| Predicted sensory transduction histidine kinase [Clostridium
           kluyveri DSM 555]
 gi|219567191|dbj|BAH05175.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 471

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           ++L + ++ +  F+ +VS+E+RSPLT+I GF   +    +   + KQ+ Y+    +    
Sbjct: 241 DSLEQVEKNRRHFISNVSHEIRSPLTSIKGFIGGMIDGIIP--HEKQNYYLSVTYSEIQR 298

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVND+LDL+ ++AG  KL    + +N+++        TK++E  +++ V+ +     
Sbjct: 299 LTRLVNDLLDLSAIEAGQFKLRIEELDINEIIRLCIIKFQTKINEKKLKVDVVMENDKLY 358

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             ADR R+ Q+ + ++ NA+ + + G  + +           SV N+G  IPE   K ++
Sbjct: 359 VAADRDRINQVVTNLIDNAVKYVNVGGNIKVSTKIKGEKAFISVYNDGEGIPESELKHIW 418

Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +RF  S+  R  +   GLGLSIV S +   G  + + + + G
Sbjct: 419 DRFYKSDKSRTSKVSTGLGLSIVRSILTQLGEDIWVENRESG 460


>gi|327536389|gb|AEA95223.1| sensor histidine kinase [Enterococcus faecalis OG1RF]
          Length = 393

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S     +  +  Y+ A    LL
Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             V+D+ +   V    + ++ +T  +  L+ ++      +  + N++I+V ++       
Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANSASLMME 274

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L+++F+ +LSNA+ +   G  ++++  +   + I +V+N+G +IP+     +F+R
Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGL+I +S + LHGG++  + SD+  T+    +P
Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383


>gi|269961959|ref|ZP_06176314.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi 1DA3]
 gi|269833282|gb|EEZ87386.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi 1DA3]
          Length = 1128

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++NE L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ 
Sbjct: 444 KLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGAIPASQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +     +    IRI   
Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRIINQ 563

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L +  AD QRL Q+   ++ NA+ ++S+G  VI  A   +      V + G  IP 
Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVI-SAMVVDDQVRVQVVDTGQGIPA 622

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681


>gi|262382344|ref|ZP_06075481.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295222|gb|EEY83153.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 637

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 126/222 (56%), Gaps = 8/222 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +   +AD +K++F+ ++++E+R+PL  I+GF+ +L   +     ++Q ++ + I 
Sbjct: 403 LKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEE--DRETRQ-EFADIIQ 459

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++ +L  L+ D+LDL+ +++  M L Y    +  L+ E+   I  +MHE  + +++   
Sbjct: 460 NNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELELYDC 518

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +L     DR RL QI + +L+NA+  + +GS +     R      F V+++G  IPED 
Sbjct: 519 EEL-VMETDRNRLTQILTNLLTNAIKHTQEGS-IRFGYKRSALSVEFFVQDSGEGIPEDK 576

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             ++F+RFV   +    +GVGLGL+I +  +   GG++ ++S
Sbjct: 577 IDTIFSRFVQLDNWS--KGVGLGLAICQGLVEQMGGNIRVTS 616


>gi|255020611|ref|ZP_05292674.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969996|gb|EET27495.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
           caldus ATCC 51756]
          Length = 494

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ + +++ F+  VS+EL++PL +     +L+ + +LG L+  Q + +E IS     L 
Sbjct: 258 LREEERLRHLFLSQVSHELKTPLASARSGAELMLSERLGKLSQAQREVLEIISRQVQELY 317

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             + ++LD+  + A  ++   + + L   L E+   +   +     ++++  D  L    
Sbjct: 318 LAIQEMLDMHALQAQSLEYAVTDLELATQLQELCGRMQPLLDRRQQKMEIAVDAGL-QVR 376

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +RLLQI S ++SNA  +S  G T+ + A  +       V+++G  IPE +   VF R
Sbjct: 377 ADPKRLLQILSNLVSNAHKYSVSGDTIRVAARAEGAGVRIQVRDHGPGIPEALLGRVFER 436

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F   +A     RG GLGL+I    +    G + + +  +G  +    +P+
Sbjct: 437 FFQVSASSNLPRGTGLGLAIARELVLAQHGEIRVRNHPQGGLSAEVWLPA 486


>gi|239908790|ref|YP_002955532.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798657|dbj|BAH77646.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 979

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 131/248 (52%), Gaps = 18/248 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK---TSKL-------GSL 602
           R LTE N  L + D +K++F+  VS++LR+PLT+I+GF+ +++   T +          L
Sbjct: 725 RELTEANARLTELDNLKSAFLNTVSHDLRTPLTSILGFSKIIQRDFTRRFLPLAEGDSVL 784

Query: 603 NSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
            +K S+ ++    I +    L  LV+D LDL+ ++ G       T  L  L+     S+ 
Sbjct: 785 RNKASKILDNLGVIVSEGERLTRLVSDFLDLSRIEDGRYVWKDKTTDLGVLIRGAVSSMK 844

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              + ++ ++I+V +D  L +   D  R+ Q+ + +LSNA+ F+S+G TV L A    G 
Sbjct: 845 GALLQKHGVQIRVDADSHLPALWVDPDRIAQVLTNLLSNAIKFTSEG-TVTLTARASTGS 903

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV + G  IP D    +F++F  V +      +G GLGL+I +  +  + G + + S
Sbjct: 904 IRVSVADTGMGIPPDELPMIFDKFYQVGDDTLVAEKGTGLGLAICKQIVEHYDGAIWVES 963

Query: 777 SDEGVTTI 784
           + +GV ++
Sbjct: 964 T-QGVGSV 970


>gi|225388703|ref|ZP_03758427.1| hypothetical protein CLOSTASPAR_02439 [Clostridium asparagiforme
           DSM 15981]
 gi|225045215|gb|EEG55461.1| hypothetical protein CLOSTASPAR_02439 [Clostridium asparagiforme
           DSM 15981]
          Length = 438

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 17/247 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L    E+ +K    +N F+   S+ELRSPL+ I         S + +   KQ Q++  
Sbjct: 200 RSLKPIEESRKK----QNEFIAAASHELRSPLSVIRS-----SLSAVTAAPEKQDQFLAN 250

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I      L  LV+D+L LA+ DA    +    +  + LL  V +       E N+R+ + 
Sbjct: 251 IDRECLRLSGLVSDLLLLASADAKTWTIRREDLDADTLLIGVYERFEPLAQERNVRLCLE 310

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKN 725
           + +  L     D QRL Q+ S +L NA+ ++  G  V L A R            F+V +
Sbjct: 311 LPEEALPHLTGDGQRLEQVLSILLDNALTYTPAGKQVTLSACRREARGHKKAGVTFAVSD 370

Query: 726 NGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  +P+   K VF+RF  ++  R  R+  GLGLS+ +  + LHGG + +  ++ G    
Sbjct: 371 QGCGVPDADKKHVFDRFYRADGSRTDRQHYGLGLSVAKELVQLHGGTIGLEDAEGGGARF 430

Query: 785 NCRIPSK 791
              +P K
Sbjct: 431 LVHLPVK 437


>gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 1319

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 18/258 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+  + E  L E  E      + K  F+ ++S+E+R+P+  I+G   L   ++L  
Sbjct: 581 LLDLTERKQFENELREAKELADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTEL-- 638

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  Q +Y+  I+ S+  LL ++NDILD + ++AG + +      L+++ + +   ++ K
Sbjct: 639 -DPSQKKYLTRINESAKNLLGIINDILDFSKIEAGKLTVESIDFSLDEVFDNLVNVVSYK 697

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716
            HE  +   +  D K+    V D  RL Q+   + SN++ F+ KG    S ++ +   + 
Sbjct: 698 AHEKGVEFLLDIDPKVPIGLVGDPLRLGQVLVNLCSNSVKFTEKGEIVVSALVEQLDENR 757

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
               FSVK+ G  I ++  + +F  F S A     R   G GLGLSI +  + L GG + 
Sbjct: 758 ATIRFSVKDTGIGIAKEKIQHLFRAF-SQADSSITRQFGGTGLGLSISKQLVELMGGELV 816

Query: 774 ISSSDEGVT-----TINC 786
           +SSS EG       TI+C
Sbjct: 817 VSSS-EGTGSVFSFTIDC 833


>gi|17227924|ref|NP_484472.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17129773|dbj|BAB72386.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 637

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 196/478 (41%), Gaps = 39/478 (8%)

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           +N+ F E+W++    + +         F     K PE  N   W  +  S  +S     D
Sbjct: 181 YNQKFAEMWKLPQQLILSKKC-PRCKAFFEGQMKDPETFNRLIWAVSSTSNIESY----D 235

Query: 391 TWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
              L +G+           G    G +W   ++T     E     L + +   +   S+ 
Sbjct: 236 VLELKDGRVFAHYSQPQWLGQKIIGRVWSIWDITESKQTEEALR-LNEARFRALAETSDA 294

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRL------------SPGTHIRNIAATCSRYYNES 494
                 D +    NPA   L       L              G  IRN A   +  Y E 
Sbjct: 295 STFLVQDTQFCYVNPAVEVLTGYTRTELLNGFDIRRLIKYRKGRQIRNSATATNFEYQE- 353

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                  +I+T    ER  L   + +L DS +++       +  M+T +++TD  +AE  
Sbjct: 354 ------ISILTKNGAER-WLSCAVTIL-DSTIDFQ----GKSVEMITAIDITDYKQAESE 401

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYI 613
           LT+  E  +   E++ SF+  V ++ R+PL NI+ F++ L    L +   +  Q  ++ +
Sbjct: 402 LTQALEQAKHLGELRASFLSMVCHQFRNPL-NIVSFSNSLLKRYLNAQTEETIQPLLDQV 460

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   L  +++D+L  A  +A  +K   S   + +  N+V   +      N   I  IS
Sbjct: 461 QLSIQQLNQMLDDMLLFAKTEAAKLKFEPSRFEIVEFCNDVISQMQMAHFPN--YINFIS 518

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +  +   D+  L  I   ++ NA+ +S  GS V L+   +N   IF VK++G  I   
Sbjct: 519 QTEYLTVWMDKNILDSILKNLIDNAIKYSPLGSMVELRLLGNNEKIIFQVKDDGIGISTL 578

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             K +F  F    +     G GLGLSIV++ ++LHGG V++ S     TT    +P K
Sbjct: 579 DQKRLFEPFYRGKNVDNIPGTGLGLSIVKTLVDLHGGQVAVESKVGVGTTFTVVLPHK 636


>gi|319786375|ref|YP_004145850.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464887|gb|ADV26619.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
          Length = 1187

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 7/236 (2%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K+ F+  + +E+R+P+T ++G ++LL  +   SL+S+Q  YVE I  + 
Sbjct: 810  KRELAEQASMAKSRFLATLGHEVRTPMTGVLGMSELLLDT---SLDSRQRSYVESIRRAG 866

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL LVND LDLA ++AG ++L+        L  EV   +A    +  +   +    ++
Sbjct: 867  DHLLRLVNDALDLARIEAGKLELDSQDFDPVALAEEVAGLMAPVAEQRGLAFHLRVAPEM 926

Query: 678  GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             + V  D  R+ QI   +L NA+ F+ +G  V+          +F V++ G  + E+   
Sbjct: 927  PAAVRGDPGRVRQILLNLLGNAVKFTDRGEVVLELGTVSPEGLVFVVRDTGPGLSEEQKA 986

Query: 737  SVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F RF  ++  R   R  G GLGL+I +      GG + + S+    T    ++P
Sbjct: 987  RLFRRFEQADGARTTSRYGGSGLGLAICQELAVAMGGRIEVDSTLGHGTAFRVQLP 1042


>gi|296107504|ref|YP_003619205.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295649406|gb|ADG25253.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 909

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IGFT++L  SKL  L   Q  YV+ I +S+  LL+++NDIL
Sbjct: 297 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 353

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + +DAG + L+   + +   ++EV    +   H+  I +  I+D  +   V  D  R+
Sbjct: 354 DFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 413

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740
            QI S +++NA+ F+  G  +I        D     +F++ + G  I PED  K  + FN
Sbjct: 414 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 473

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++  R +  G GLGL I +       G +S++S     +T + RI
Sbjct: 474 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 520


>gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
 gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
          Length = 1755

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E +L    +   +A+  K+ F+ ++S+E+R+P+  ++G   L++ ++L   +++Q  YV 
Sbjct: 1006 ENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQL---DTRQQDYVV 1062

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               +++  LL L+NDILD + +DAG ++L+     L D+L E+   ++   H   + +  
Sbjct: 1063 KAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVVLSGNQHHKTVELMF 1122

Query: 672  ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNN 726
              D  L   V  D+ R+LQI   +  NA+ F+  G  VI L A R +   +    SV + 
Sbjct: 1123 EVDPSLPLEVRGDKLRILQILINLGGNALKFTEAGQVVIHLSALRQDAASVTLQVSVTDT 1182

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  I  +    +FN F        RR  G GLGL I +  + L G  + + S
Sbjct: 1183 GIGITPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGSELRVDS 1234


>gi|122938377|gb|ABM69036.1| mutant Arabidopsis ethylene receptor [Cloning vector pBEO210]
          Length = 738

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 432 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 491

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
              DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 492 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 550

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 551 SKRFVNLMEGNIWIESDGLG 570


>gi|237716144|ref|ZP_04546625.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262407756|ref|ZP_06084304.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647233|ref|ZP_06724831.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809621|ref|ZP_06768313.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229443791|gb|EEO49582.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354564|gb|EEZ03656.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637413|gb|EFF55833.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294443164|gb|EFG11939.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 644

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 5/233 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q  
Sbjct: 399 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQQS 456

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     +  +
Sbjct: 457 YYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSENQ 516

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727
               +  +    V D QR+ Q+   +LSNA  F+  G  T+      +    +FSV + G
Sbjct: 517 FLFTTSFESFRMVTDVQRMQQVMINLLSNANKFTKCGKITLDFSVNEETQMAVFSVTDTG 576

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             IP++    VF RF       Q  G GLGLSI +  ++   G + I     G
Sbjct: 577 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 627


>gi|254412242|ref|ZP_05026017.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181208|gb|EDX76197.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 365

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 118/227 (51%), Gaps = 1/227 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ +++K  F+   S+E R+PLT I    DLL+     ++++K+ +++  I  S   ++ 
Sbjct: 138 KELNQLKTQFIAITSHEFRTPLTTISSSNDLLERYCRDTMDAKKEKHLRQIKLSVNQMIQ 197

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++D+L +   ++G ++L    I L    + + + I T    +  +I     G+      
Sbjct: 198 LLDDVLLIGRAESGKVELQLIPIDLVKFCHNLVEEIQTNAG-DKYQIIFTHQGEFTETCL 256

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   L  I S +L+NA+ +S +G  V      ++    F +K++G  IP +  K +F  F
Sbjct: 257 DINLLRPILSNLLANAVKYSPQGGVVTFHLFSNDTTITFQIKDSGIGIPPEAQKYLFESF 316

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++ G+ +G GLGLSIV+  +++HGG +S+ S     TT   ++P
Sbjct: 317 HRASNVGKIKGTGLGLSIVKRCVDIHGGEISVDSEVNVGTTFTVKLP 363


>gi|170731064|ref|YP_001776497.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
 gi|167965857|gb|ACA12867.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
          Length = 558

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++ERA   +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +  +   
Sbjct: 293 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 345

Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662
           Y  +  I++S+ +   L++D+LDL+++  G M+L    + L + + EV    +Q + +K 
Sbjct: 346 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 405

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               +R   +    LG    D  RL QIF  +LSNA+ F+     + ++   D   F  S
Sbjct: 406 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 461

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I  +    +F+RF        R   G+GLGL+IV+S + +HGG+V  +S   G
Sbjct: 462 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 521


>gi|310643960|ref|YP_003948718.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309248910|gb|ADO58477.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1238

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 16/257 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L ++   L    + K+ F+ ++S+ELR+PL +++  + LL  +K G+L  KQ +Y
Sbjct: 523 RARAQLEQQAMQLGITSKYKSEFLANMSHELRTPLNSLLILSQLLSENKEGNLKPKQVEY 582

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S   LL ++++ILDL+ VDAG M +N+ T+ L +L   V+Q+ A    +  +++
Sbjct: 583 AQTIYMSGADLLKMIDEILDLSKVDAGKMDINHETVHLEELELFVEQNFAPVAAKRELQL 642

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
              I +    + ++D  RL QI   +LSNA  F+++GS +  K +R NG+          
Sbjct: 643 HTEIEENLPDAIISDGYRLKQILRNLLSNAFKFTTEGS-IRFKVSRANGEQLPDMLDSRK 701

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                SV++ G  I  D    +F  F        R+  G GLGLSI      L GG +++
Sbjct: 702 SYLALSVRDTGIGIASDKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSKLLGGAITV 761

Query: 775 SSSDEGVTTINCRIPSK 791
            S     +     +P +
Sbjct: 762 ESEQGQGSCFTLYLPEQ 778


>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1823

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 149/330 (45%), Gaps = 49/330 (14%)

Query: 480  IRNIAATCSRYYNESDGWDLFAAIIT--SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            ++++ +  + Y  E +G      IIT    D  R+     +ELL D   +  I  L  A 
Sbjct: 956  LKSMLSVRTSYQGEPNG------IITLQQCDVTRQWTTDEIELLEDVAAQVGIT-LAQAH 1008

Query: 538  TMLTFVNVTDSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGF 590
             + T       V+ +  L E+NEAL   R+A E+    K+ F+  +S+E+R+P+  +IG 
Sbjct: 1009 LLET------EVKRQEQLAEQNEALEQARQAAEVANRAKSEFLATMSHEIRTPMNAVIGM 1062

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            T LL       L  +Q  +VE I  S   LL ++NDILD + +++G M L      L   
Sbjct: 1063 TGLLLDM---DLTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKMDLEQHPFELRTC 1119

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + E    +A K  E  + +  + D  + S V  D  RL QI   +L NA+ F+  G  V+
Sbjct: 1120 IEESLDLLAPKASEKGLELAYLIDSSVPSKVLGDVTRLRQILVNLLGNAVKFTEAGEIVV 1179

Query: 710  LKAARD----NGDFIF-----------------SVKNNGSSIPEDMCKSVFNRF--VSNA 746
               AR     +G+ ++                 +VK+ G  IP D    +F  F  V  +
Sbjct: 1180 SVTARKISERHGEELYKLPLSNYQVPVPYEIQIAVKDTGIGIPPDRMDRLFKAFSQVDAS 1239

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               Q  G GLGL+I +    + GG + + S
Sbjct: 1240 TTRQYGGTGLGLAISQRLSEMMGGKMWVVS 1269


>gi|91204590|emb|CAJ70818.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 546

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 19/254 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-------NSK 605
           R L + N+ L+  D+ K+ F+  VS+ELR+PLT IIGFT+++K  +L +        N+ 
Sbjct: 290 RELKDANQKLQDLDKAKSGFLSTVSHELRTPLTAIIGFTNIIK-KRLDTFIFPQIETNAI 348

Query: 606 QSQ-YVEYISASSTILL-------NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +SQ  ++ I  +  I+L       NL+ND+LDLA ++AG ++       + +++     +
Sbjct: 349 KSQKAIQQIKENINIILSEGERLTNLINDVLDLAKIEAGKIEWKRHQTSVTEVIMNATAA 408

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
               + +  + + V  +  +  F  D+ R +Q+   ++SNA+ F+ KG+        DN 
Sbjct: 409 TTALIEQKGLALNVDIEKNIPDFYGDKNRFIQVVINLISNAIKFTDKGAISCYAKQTDN- 467

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +V + G  I  +  + +F++F  V +    +  G GLGL I +  +  HGG +   
Sbjct: 468 KIQVTVMDTGVGIAPENLEKIFDKFKQVGDTLTNKPGGTGLGLPICKQIVEYHGGSIHAE 527

Query: 776 SSDEGVTTINCRIP 789
           S     T  +  IP
Sbjct: 528 SEPNKGTAFSFTIP 541


>gi|83942229|ref|ZP_00954690.1| conserved hypothetical membrane protein [Sulfitobacter sp. EE-36]
 gi|83846322|gb|EAP84198.1| conserved hypothetical membrane protein [Sulfitobacter sp. EE-36]
          Length = 608

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 532 PL-PNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPL 584
           PL PN   +   +T V++TD +   RAL    +AL +ADE    K+ F+  VS+ELR+PL
Sbjct: 310 PLDPNGAILGWSITLVDITDRIVITRAL---EDALLRADEANRAKDEFISVVSHELRTPL 366

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T++ G   L  + +LG ++++    +E    +   L  LV++IL    +D   + L+   
Sbjct: 367 TSLKGGLALALSGRLGEIDARIRSPLEIAQRNGMRLSRLVDNILLAQKIDVDALSLDALP 426

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L  LL E  +       E  I + +    +  +   D   L QI   ++SNA+ FS +
Sbjct: 427 VDLGALLKESLEENKMFAAEQKIDLVLPKGHQTATITGDAFALRQIIDNLVSNAIKFSEQ 486

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
           GSTV    +  NG    S+K++G  IPE M   VF RF  V N  +   +G GLGL I +
Sbjct: 487 GSTVEGSLSIRNGHVRLSIKDSGRGIPEGMEGQVFGRFEQVKNGGQYATQGSGLGLHISQ 546

Query: 763 SFINLHGGHVSISS-SDEGVT 782
                  G +   S   EG T
Sbjct: 547 QLARQMSGKLFYDSVVGEGTT 567


>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1311

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 11/230 (4%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +E+K  F  ++S+ELR+PLT II     LLK  +    N    + ++ I  ++  LL+LV
Sbjct: 805  EEMKYRFFTNISHELRTPLTLIIAPLESLLKKEE----NPDTRKQLKTIDRNAHNLLSLV 860

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            N +LD   ++     L   T  L D+L+ + +S      E NIR       +     AD 
Sbjct: 861  NQLLDFRRIEMKGETLALETFNLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLITADS 920

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFN 740
             ++ ++ + +LSNA  F+ +G  V LKA  +  D     +  V+++G  IP +  + +F 
Sbjct: 921  PKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPAEEQEHIFE 980

Query: 741  RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  +N+H+    G G+GL++ + ++ LH G + +SS     +    RIP
Sbjct: 981  RFYQANSHK-DNTGSGIGLNVAKEYVQLHNGKIEVSSVPGKGSCFTVRIP 1029


>gi|325926364|ref|ZP_08187693.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
 gi|325543243|gb|EGD14677.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
          Length = 1084

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N  + 
Sbjct: 682 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANMGRG 738

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I  S+     +++D+LD++ + +G ++L      +  L+  V + +        I
Sbjct: 739 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPTALARKI 796

Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +++ +  DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++
Sbjct: 797 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQD 855

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            G  I  D    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 856 TGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 912


>gi|289675169|ref|ZP_06496059.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 500

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 14/258 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+  + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 160 WIDITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 218

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L    SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L + V +  + +
Sbjct: 219 LGKIPSQGLQVAHRSATELIALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQ 278

Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  + +++   G+  G +  D  RL Q+   +L NA+ F+ +G+ V+ L    D+ + 
Sbjct: 279 AGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPES 338

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                 ++++G  I     + VF  F      + AH G   G GLGLSI    + L  G 
Sbjct: 339 TRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYG---GSGLGLSITRQLVELMKGD 395

Query: 772 VSISSSDEGVTTINCRIP 789
           +S+ S     T +   +P
Sbjct: 396 ISLHSEPGKGTLVTIDLP 413


>gi|119491241|ref|XP_001263209.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
 gi|119411369|gb|EAW21312.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
          Length = 2332

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 16/231 (6%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A   K+ F+ ++S++LR+P+  +IG ++LLK +   +LN +Q +YVE I   +  LL L+
Sbjct: 1883 AARAKSIFLANISHDLRTPMNGVIGLSELLKGT---NLNKEQDEYVESIRVCADTLLTLI 1939

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FV 681
            NDILD + ++AG MK++   + + + ++EV +++    H +   + +    K+      +
Sbjct: 1940 NDILDFSKLEAGKMKISTVPLNVKETISEVVRAL-RYTHRDRGLVTIEDLDKVPPDLVVL 1998

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKS 737
             D  RL QIF  +LSN+  F+ KGS TV  K +R+  + +    +V + G  IPE+    
Sbjct: 1999 GDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSR 2058

Query: 738  VFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
            +F  F S A     R   G GLGLSI ++ I ++ GG + + S+    TT+
Sbjct: 2059 LFKPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTV 2108


>gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1]
 gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1156

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 6/236 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E++L +      ++ + K+ F+ ++S+E+R+PL+ I+GF DLLK     ++ 
Sbjct: 767 DITQRKKDEKSLLKAKRKAEESAKSKSEFLANMSHEIRTPLSAILGFIDLLKKE---NIE 823

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K  +YV+ I  SS  LL ++ DILD + +++G ++++            +      K  
Sbjct: 824 KKAKEYVDIIDTSSKGLLKIIEDILDFSKIESGKLEIDKIDFSPKIEFETIIHLFLAKCA 883

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           E +I + +I D  L   +  D  R+ QI S +LSNA+ F+ +G  + +     NG    S
Sbjct: 884 EKDIALTLILDESLPETIHTDPLRIKQIISNLLSNAIKFTDQGKKITVTINYKNGFLNVS 943

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           VK+ G  I ++    +F  F        R   G GLGL+I    + + GG + + S
Sbjct: 944 VKDEGKGIAKEKLSHIFESFAQEDSSTTREYGGTGLGLTISYRLVKILGGELHVKS 999


>gi|170738618|ref|YP_001767273.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168192892|gb|ACA14839.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 764

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 7/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQY 609
           AER L +K +A   A+  K+ F+ ++S+ELR+PL  I+GF ++++    G L   K  +Y
Sbjct: 503 AERYLDQKAQA-ESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGHLGCEKYREY 561

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +S   LL++++DILD++ ++A  + L    + + ++L  V + +A       + +
Sbjct: 562 CRDIRSSGQYLLSVIDDILDMSRIEARRVTLAKQPLPVAEVLERVLKVVAEAARAKGLTL 621

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V  +      +AD + L QI   +L NA+ F+     V ++  R        V+++G  
Sbjct: 622 SVEMNAD-AVVLADARALHQILLNLLQNAVKFTPDAGRVAVRTRRALDAVHIYVEDSGIG 680

Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           IP  +   +   F +  SN  R   +G GLGL+I  S   LHGG + I S     T +  
Sbjct: 681 IPRTVLPKLGAPFEQVESNLSR-SFKGSGLGLAIARSLTELHGGRLRIRSEVGSGTIVLV 739

Query: 787 RIP 789
           R+P
Sbjct: 740 RLP 742


>gi|108762779|ref|YP_635549.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
 gi|108466659|gb|ABF91844.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
          Length = 551

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 12/249 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
             TD   A RA+    E LR A E K+ F+   ++ELR+PL    G+  L       +L 
Sbjct: 304 TATDIDDARRAV----ETLRAASEAKDMFLTMAAHELRTPLQAARGYAHLASVKAGDTLA 359

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +  I  S   +  LV ++LD+  +  G + L   ++ +  LL +V +       
Sbjct: 360 PGVDKALHGIHRSVNRMAKLVENLLDVGRIQRGELHLEPKSLDVGALLRDVAEHFEPLPE 419

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             +I +    D   G  V  DR+RL Q+F+ ++SNA+ +S +G  + L A  + G     
Sbjct: 420 GQHIEL----DAPEGLVVPGDRERLDQVFTNLVSNALRYSPEGGRIRLAAREEAGRVHVE 475

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGV 781
           V ++G  IP +  +++F RF   AH     G+GLGLSI    +  HGG + + S   +G+
Sbjct: 476 VVDHGLGIPGEKLENIFERF-GRAHGISYGGLGLGLSIARGIVERHGGRIWAESPGSQGM 534

Query: 782 -TTINCRIP 789
            +T +  +P
Sbjct: 535 GSTFHVVLP 543


>gi|116199499|ref|XP_001225561.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
 gi|88179184|gb|EAQ86652.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
          Length = 1901

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 15/227 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A + K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  LL
Sbjct: 1225 LKEAMDSKGRFLSNMSHEIRTPLIGISGMVTFLQDT---TLNEEQRDYTNTIQTSANSLL 1281

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKLNY       L+ +V + ++T      + +  + +  + ++V
Sbjct: 1282 MIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1341

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI---FSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F+S+G           + A    D I   FS+ + G    
Sbjct: 1342 KGDKVRIRQVLLNVIGNAIKFTSRGEVFSKCRVFNPEGAPPQTDEIMLEFSIIDTGRGFS 1401

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++    +F  F  +  +   Q  G GLGL I    + LHGG +  S+
Sbjct: 1402 QEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGRMEGSA 1448


>gi|332995263|gb|AEF05318.1| GAF sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 695

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 14/243 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+     ++L +K     +A + ++ F+ ++S+E+R+P+  + G  + L ++   SLN
Sbjct: 285 DITERFNTTQSLKQKTAIAEQALKARSEFLANMSHEIRTPIHGVQGMLETLCST---SLN 341

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ +Y      S+  LLN+VNDILD + +D+G M  +   +   +L+ +  Q    +  
Sbjct: 342 EKQKEYTHVAMRSAESLLNIVNDILDFSKIDSGHMTYDVEPVNFKELIEQ--QIPMFRRL 399

Query: 664 ENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +   I+ I++    S   F+AD  RL QI   +++NA+ F+ KGS  I       G   
Sbjct: 400 ADKKGIEFITETAAVSDTLFLADSLRLSQILMNLMNNAVKFTDKGSIKISTRCTKYGAGR 459

Query: 721 FSVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           F VK    + G  I ++  K +F+ F+      QRR  G GLGL+IV + +  + G+V +
Sbjct: 460 FRVKLIVTDTGIGISDEQQKVIFSPFLQAEESTQRRFGGTGLGLAIVNNIVEHYDGNVEV 519

Query: 775 SSS 777
           SS+
Sbjct: 520 SSA 522


>gi|295107993|emb|CBL21946.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 468

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L ++ E +  F+ ++S++ RSPLT+I G+ + +    +      Q +Y++ IS  +  
Sbjct: 236 DKLNRSGEYQRQFISNISHDFRSPLTSIKGYIEAMIDGTIPV--EMQEKYLKIISYETER 293

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L   +L L  +D     LN     +N ++     S        NI +++I  G+   
Sbjct: 294 LEKLTRGLLTLNELDIQKRMLNIQPFDINGVIKATAASFEGSCTSRNILLELILSGRELL 353

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +++ Q+   +LSNA+ FS   ST+ ++    NG    SVK++G  IP+     ++
Sbjct: 354 AQADMEQIQQVLYNLLSNAIKFSPDNSTITIETTEKNGKIFVSVKDHGIGIPKASIHKIW 413

Query: 740 NRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            RF   +  RG+ ++G GLGL+IV+  I  HG H+++ S+ EG+ T
Sbjct: 414 ERFYKIDRSRGKDQKGTGLGLAIVKEIIKAHGQHINVIST-EGIGT 458


>gi|117619924|ref|YP_857513.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561331|gb|ABK38279.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1089

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 121/251 (48%), Gaps = 6/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+    E AL    E   +A   K+ F+  +S+E+R+P+  I+G  +L   S+  +
Sbjct: 678 WIDITERKTMEEALRRAKEQADRASRAKSDFLATMSHEIRTPMNAILGMLEL--ASQDPA 735

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L     + +   S S+  LL+L+ D+LD++++++G + L      L  LL+ V ++ A  
Sbjct: 736 LAPYTGEQLRIASESANGLLDLIGDVLDISSIESGQLTLAPEPCELAPLLHSVARAFAGM 795

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718
             +  +  +V  D  L   + D  RL QI   +L NA+ F+ +G   +   L  +     
Sbjct: 796 AKQKGLSYRVELD-PLPRVLIDGPRLRQIVFNLLGNAIKFTERGEVSLQASLVGSAQQPQ 854

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
               ++++G  I  D    +FN F       Q  G GLGL+I      L GG +++SS  
Sbjct: 855 LHLLIRDSGVGIAPDKLPGLFNPFYRAHDPYQFAGTGLGLNIARMLCQLMGGKIAVSSEL 914

Query: 779 EGVTTINCRIP 789
              T +  R+P
Sbjct: 915 GAGTELRIRLP 925


>gi|301308440|ref|ZP_07214394.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300833910|gb|EFK64526.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 659

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 126/222 (56%), Gaps = 8/222 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +   +AD +K++F+ ++++E+R+PL  I+GF+ +L   +     ++Q ++ + I 
Sbjct: 425 LKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEE--DRETRQ-EFADIIQ 481

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++ +L  L+ D+LDL+ +++  M L Y    +  L+ E+   I  +MHE  + +++   
Sbjct: 482 NNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELELYDC 540

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +L     DR RL QI + +L+NA+  + +GS +     R      F V+++G  IPED 
Sbjct: 541 EEL-VMETDRNRLTQILTNLLTNAIKHTQEGS-IRFGYKRSALSVEFFVQDSGEGIPEDK 598

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             ++F+RFV   +    +GVGLGL+I +  +   GG++ ++S
Sbjct: 599 IDTIFSRFVQLDNWS--KGVGLGLAICQGLVEQMGGNIRVTS 638


>gi|298482826|ref|ZP_07001009.1| two-component system sensor protein [Bacteroides sp. D22]
 gi|298271026|gb|EFI12604.1| two-component system sensor protein [Bacteroides sp. D22]
          Length = 541

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 139/256 (54%), Gaps = 8/256 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F N+T+ ++  R L E  E   +++ +K++F+ ++S+E+R+PL  I+GF++++  + 
Sbjct: 288 LLRFENITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 346

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+  ++   +N+L+  + + +
Sbjct: 347 --EEEEEKQEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 404

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K    +++I             DR RL Q+     +NA+ F+SKGS  +     +  D
Sbjct: 405 QEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASD 464

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I F VK+ G  IP D    VF RFV  N+     +G GLGL+I    +   GG +   S
Sbjct: 465 EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGAES 521

Query: 777 SDEGVTTINCRIPSKE 792
            +   +    +IP  E
Sbjct: 522 KEGEGSCFWFKIPRTE 537


>gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 1375

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 20/250 (8%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R E+A+    EA    +E K++F+  +S+E+R+PL +I+G  DLLK +    L+ +Q +Y
Sbjct: 855  RLEQAILRTEEA----NEAKSAFLASMSHEIRTPLNSILGVADLLKNT---DLSDEQGEY 907

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENN 666
            V    +S  ILL ++NDILD + ++A  +KL    +   DLL E +   Q  AT     +
Sbjct: 908  VNIFESSGEILLTIINDILDFSKIEANHVKLENIPV---DLLQETESLMQLQATAASSRH 964

Query: 667  IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNG--DFIF 721
            + + +     +   V  D  R+ QI   IL+NA+ F+S G  S V+ ++   N   +  F
Sbjct: 965  VELVMRYKPDVPEIVLGDSTRIRQILLNILANAVKFTSSGEVSIVVSRSPESNSTDNITF 1024

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            ++ + G  I  +   S+F  F        R+  G GLGLSI      L GG ++ SS+  
Sbjct: 1025 TISDTGIGIAPEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMGGTITASSTPG 1084

Query: 780  GVTTINCRIP 789
              +T    +P
Sbjct: 1085 KGSTFMVTLP 1094


>gi|220934271|ref|YP_002513170.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995581|gb|ACL72183.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 915

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 8/231 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LT       +A++ K+  +  +S+ELR+PL+ I G+ +LL+  + G L+ +   ++E 
Sbjct: 272 RELTLARGKAEEANQRKSQLLASISHELRTPLSAIQGYAELLE--QYGDLDDRDLGWLEI 329

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS   L LVND+LD+A +++G + ++ S   L   L+EV       + +  + + +I
Sbjct: 330 INTSSKDTLKLVNDLLDVARLESGRITIHRSQFQLGKCLSEVIGICRRSLRDRQVDVTLI 389

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGS 728
            S     S  +D  R  Q+ + +LSNA+ F++ G   +  + R  G        V++ G 
Sbjct: 390 MSPETPASITSDHLRFKQVITNLLSNALKFTANGQVNVHASVRQEGRTRQLEICVRDFGP 449

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            I  D    +F  F  + H   RR  G GLGL+I      L GG + + S+
Sbjct: 450 GIEPDDLPHIFEPFFQSRHPEVRRHSGAGLGLNITRGITELLGGQILVDSA 500


>gi|30026150|gb|AAO44957.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026154|gb|AAO44959.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026156|gb|AAO44960.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026158|gb|AAO44961.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026160|gb|AAO44962.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026162|gb|AAO44963.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026164|gb|AAO44964.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026166|gb|AAO44965.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026168|gb|AAO44966.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026170|gb|AAO44967.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026172|gb|AAO44968.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026174|gb|AAO44969.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
 gi|30026176|gb|AAO44970.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
 gi|30026178|gb|AAO44971.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
 gi|30026184|gb|AAO44974.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
 gi|30026186|gb|AAO44975.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
 gi|30026192|gb|AAO44978.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
 gi|30026198|gb|AAO44981.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
 gi|30026200|gb|AAO44982.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
          Length = 532

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            + DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 329 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407


>gi|52143544|ref|YP_083285.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977013|gb|AAU18563.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 375

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 137/246 (55%), Gaps = 13/246 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL +   +
Sbjct: 128 TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 186

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L N V+++L+   ++   ++L+ S + +  L+ ++      ++ + 
Sbjct: 187 CEQYVSILKRKSYELKNQVDELLEYCQINYREIELHKSLVNMKALMEQIMIDFVPQLDDA 246

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+   +  D +L   + D   ++++F  ++SN++ +   G  +++  ++ + +   ++KN
Sbjct: 247 NMSFCIKGDKELHVEI-DVALMVRLFENVISNSIMYGKDGKEILILVSKRDMNVEIAIKN 305

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778
            G  IP++    VF +F    +RG++       G G+GL+I +S   LH G +++ S+D 
Sbjct: 306 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDIAVRSNDK 361

Query: 779 EGVTTI 784
           E V TI
Sbjct: 362 ETVFTI 367


>gi|23099273|ref|NP_692739.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22777502|dbj|BAC13774.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
          Length = 584

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 127/243 (52%), Gaps = 8/243 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+    R+ D+++  F+ +VS+ELR+P++ + G+++ +    + S   ++++  + 
Sbjct: 346 RDMTEE----RRLDKLRKDFIANVSHELRTPISMLQGYSEAI-VDDVASSKEEKNELAQI 400

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   S  +  LVN++LDLA ++AG ++L   ++ +   +  +         E  + +++ 
Sbjct: 401 IYEESLRMGRLVNELLDLARMEAGQIQLRLDSVAIQPFIERIVHKFQGISREEMVELELT 460

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +      D  R+ Q+ + ++ NA+  +S    V + A  +       VK++GS IPE
Sbjct: 461 VDIEHQIGEMDPDRIEQVLTNLIDNAIRHTSNNGFVKVLAVSNQDKLYVEVKDSGSGIPE 520

Query: 733 DMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F RF        + +++G GLGL+I ++ I+ H G + + S  +  TT +  IP
Sbjct: 521 EDLPFIFERFYKADKSRVKKEKQGTGLGLAIAKNIIDAHHGSIYVKSKLDAGTTFSFEIP 580

Query: 790 SKE 792
            K+
Sbjct: 581 IKQ 583


>gi|329997600|ref|ZP_08302870.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS
           92-3]
 gi|328538976|gb|EGF65028.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS
           92-3]
          Length = 779

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L S+Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++   D GD 
Sbjct: 381 VLEPSLPLPHKVITDGP---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 431

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IPE     +F  +  V ++H G+   G G+GL++        GG +S++
Sbjct: 432 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 491

Query: 776 SSD-EGVT-TINCRIPS 790
           S   +G T T+    P+
Sbjct: 492 SQPGKGATFTLTVHAPA 508


>gi|326563325|gb|EGE13592.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           46P47B1]
          Length = 988

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+ ++S+ELR+PL +I GF +LL  ++ G L  +Q+ YV+ I  SS  LL LVND
Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685
           +LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D  
Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F  
Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 RR  G GLGL I +    L GG +
Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526


>gi|88860810|ref|ZP_01135447.1| probable two-component sensor kinase transcription regulator
           protein [Pseudoalteromonas tunicata D2]
 gi|88817405|gb|EAR27223.1| probable two-component sensor kinase transcription regulator
           protein [Pseudoalteromonas tunicata D2]
          Length = 537

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 16/235 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL   N+ L + D  +  F+  +S+ELR+PLT I G +++L       L S+ +Q  +Y 
Sbjct: 296 ALERSNQKLAQVDHQRRQFLADISHELRTPLTIIRGESEVL-------LRSQSAQATDYK 348

Query: 614 SASSTIL------LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
                ++        L+ D++ +A   AG +KL+Y    L +LL+E++Q    K  +   
Sbjct: 349 EVLQRVVDEVQHTTALIEDLMLVARSSAGQLKLSYHQFDLKNLLSEMQQIYQRKARDQQK 408

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            I +++  +  +F+ AD +RL Q+   +L NA+ +S   +   ++        +  V + 
Sbjct: 409 TI-ILNLPQQDAFIDADERRLRQVMMILLENALAYSPSQTQTEIQLIIREELIVIKVVDQ 467

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           G  IPE+  + VF RF    +RGQ  G GLGL + ++ I+ HGGH+++  +  G+
Sbjct: 468 GMGIPENEQQQVFERFY-RGNRGQTPGSGLGLPVAKAIIDGHGGHITLQPNVSGL 521


>gi|332559833|ref|ZP_08414155.1| histidine kinase [Rhodobacter sphaeroides WS8N]
 gi|332277545|gb|EGJ22860.1| histidine kinase [Rhodobacter sphaeroides WS8N]
          Length = 849

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 41/421 (9%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           W++ +   +       +      GQ L ++      G  + +  ++T Q+ L        
Sbjct: 153 WQQRMIRRWDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQMRLRA------ 206

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYY 491
                 ID + +G  +F    R+ L N  +R+++      L PG     I         +
Sbjct: 207 -----AIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQF 261

Query: 492 NESDG----WDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTF 542
            E+ G    W   A  + +F    + L G  E   D      V+E+     P+   +   
Sbjct: 262 PEAAGREEEW--LADRLAAF----RHLGGAAEQQLDDGRWLRVIEHET---PDGGRVGLG 312

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+  R + AL     A   A   K++F+ ++S+E+R+P+  I+G  DLL  +    L
Sbjct: 313 VDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET---VL 369

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q  + E I +S   LL ++NDILD + ++A  + L+     L   ++EV   +  K 
Sbjct: 370 TEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKA 429

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
               I + +  D  L + FV D  RL Q+ + ++ NA+ F++ G  +I    L+ A    
Sbjct: 430 RAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRH 489

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           D   +V++ G  I  +    VF  F        RR  G GLGL+I    I L  G V + 
Sbjct: 490 DLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVE 549

Query: 776 S 776
           S
Sbjct: 550 S 550


>gi|303239891|ref|ZP_07326414.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592601|gb|EFL62326.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 587

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 126/234 (53%), Gaps = 10/234 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +RK ++++  FV +V++EL++P+T+I GF + LK+   G++N      ++++ I   +  
Sbjct: 359 IRKLEQLRTEFVSNVTHELKTPITSIRGFIETLKS---GAINKPDVSERFLDIIDIEAER 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+NDIL L+ ++  +   +  +  L  +++ V + +     E N+ +    D K+  
Sbjct: 416 LHELINDILSLSEIENKLSDTDLESFSLKSIIDGVFEVMENIAIEKNVLLNNTVDEKI-L 474

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             A+R R+ Q+   ++ NA+ ++    +V + A R  G  + SVK+ G  IP D    +F
Sbjct: 475 IKANRNRMKQLVLNLVDNAIKYNIPTGSVTVDAQRVGGKVVISVKDTGIGIPPDHIPRIF 534

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF     +G+ R   G GLGLSIV+  +NL+ G + +SS     T    ++P+
Sbjct: 535 ERFYR-VDKGRSRDMGGTGLGLSIVKHIVNLYNGDIKVSSEVGKGTEFIIQLPT 587


>gi|300869348|ref|ZP_07113938.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300332647|emb|CBN59136.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1504

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            EA  +A+ IK+ F+  +S+ELRSPL  I+G+T LL+T K   +  K ++ +  I  ++ +
Sbjct: 1129 EAAERANRIKDEFLAILSHELRSPLNPILGWTKLLQTRKFNEI--KTAEALATIERNAKL 1186

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
               L++D+LD+A +  G + ++ + + L  ++     ++ T     +I +  +    +G 
Sbjct: 1187 QCQLIDDLLDVAKILRGKLSIDTTPVNLVFVIESAIDTVRTAAVSKSILLHPVLP-NIGQ 1245

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
               D  RL QI   +LSNA+ F+  G  V ++  R        V + G  I       +F
Sbjct: 1246 VAGDSTRLQQIVWNLLSNAIKFTPNGGRVDIRIERVKDSAHIIVSDTGKGINPAFLPYIF 1305

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
              F        R+  G+GLGL+IV + +  HGG +S  S  EG+  T   R+P
Sbjct: 1306 ESFRQEDVSITRKYGGLGLGLAIVRNLVEAHGGTISADSPGEGLGATFTVRLP 1358


>gi|126651922|ref|ZP_01724114.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126591191|gb|EAZ85300.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 915

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 133/256 (51%), Gaps = 15/256 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A++ L E  E L      K+ F+ ++S+ELR+PL +I+  +++L  +    L  +++++
Sbjct: 486 KAKQELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENNQDHLTDEEAEF 545

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I +S   LL L+NDILDL+ V+AG + + ++ + ++++  +++ + A    + NI  
Sbjct: 546 AKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNVSEVPVQIEHTFAPVAMKKNIDF 605

Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARD--------NG 717
            +  +D  +  F  D +R  QI   +LSNA  F+  GS  +     A R         + 
Sbjct: 606 HISKADNVVDVFYTDEKRFQQIVKNLLSNAFKFTEHGSVTLAINQLAQRQLTSNMQDIST 665

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           D++  +V + G  IP+D  + +F  F        R+  G GLGLSI + F  L GG +++
Sbjct: 666 DWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFAKLLGGWITL 725

Query: 775 SSSDEGVTTINCRIPS 790
            S +   +     IPS
Sbjct: 726 QSEEGQGSIFTLTIPS 741


>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1410

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 29/244 (11%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EAL  A + K+ F+  +S+E+R+P+  +IG T LL  ++L    S Q  YVE I +SS
Sbjct: 665 RDEAL-AATKAKSEFLATMSHEIRTPMNAVIGMTGLLLDTRL---TSTQQDYVETIRSSS 720

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+NDILD + +++G ++L      L   + E    +ATK    NI +  + D   
Sbjct: 721 DALLSLINDILDFSKIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDPIT 780

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA-------ARDNGD---------- 718
            S  + D  RL QI   +LSNA+ F+  G  VI LKA       + +N D          
Sbjct: 781 PSKVIGDGARLRQILVNLLSNAVKFTETGEVVISLKAVSLEPIVSEENLDENSTETTTQP 840

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                 F+V++ G  IP      +F  F  V ++   Q  G GLGL I +    + GG +
Sbjct: 841 NRYQIQFAVRDTGIGIPPARMNRLFKSFSQVDSSTSRQYGGTGLGLVISKRLAEMMGGQM 900

Query: 773 SISS 776
            + S
Sbjct: 901 WVES 904


>gi|90578034|ref|ZP_01233845.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
 gi|90441120|gb|EAS66300.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
          Length = 1311

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 136/261 (52%), Gaps = 22/261 (8%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTS 597
            +++T +   + AL E NE    A E K+ F+  +S+E+R+P++ I+   +L+    KT+
Sbjct: 652 ILDITQTKEQQVALMEANEKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPHVKTT 711

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L  ++   SQ       S   LLN+VND+LD + ++AG + +N S   ++DL++E+ Q 
Sbjct: 712 ELRQIHHNLSQ-------SGRNLLNIVNDVLDFSKIEAGKLSINPSENNISDLIHELVQP 764

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKA 712
            +    +  I   +  D  +    + D  RL QI + +++NA+ F+ +G    +  +++ 
Sbjct: 765 HSIHAQQKEITFTLWLDPAIAHCLLFDEVRLTQILNNLINNAIKFTVQGNIHLAVDMIQE 824

Query: 713 ARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           +       FS+ + G  I PED+ + +F  FV       RR  G GLGLSI      L G
Sbjct: 825 SASQQRLTFSIIDTGIGIKPEDL-QRLFQPFVQVEQNSNRRFSGTGLGLSICHQLAQLMG 883

Query: 770 GHVSISSSDEGV-TTINCRIP 789
           G + ++ SD  + TT +  IP
Sbjct: 884 GEI-VAKSDINIGTTFSVTIP 903


>gi|52842130|ref|YP_095929.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629241|gb|AAU27982.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 910

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IGFT++L  SKL  L   Q  YV+ I +S+  LL+++NDIL
Sbjct: 298 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 354

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + +DAG + L+   + +   ++EV    +   H+  I +  I+D  +   V  D  R+
Sbjct: 355 DFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 414

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740
            QI S +++NA+ F+  G  +I        D     +F++ + G  I PED  K  + FN
Sbjct: 415 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++  R +  G GLGL I +       G +S++S     +T + RI
Sbjct: 475 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 521


>gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
 gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
          Length = 729

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 161/350 (46%), Gaps = 15/350 (4%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           ++I+ + +G A+F  DGR+ ++N A+  L       + PG     +   C+      D  
Sbjct: 83  QSIETIPDGFALFDEDGRLVMANRAY-LLPFDGLTAVGPGVSYMEMLQFCTEE-GIVDIG 140

Query: 498 DLFAAIITSFDDER--KSLQGT--LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           D+  A    +  ER      G   + L +   +       P+   +   +++T  VR++ 
Sbjct: 141 DMAPAAWREYMRERWQSDAPGPRIVRLWNGRAIRLLDQRAPSGDMVSLALDITAEVRSKE 200

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L         A   K++F+ ++S+E+R+P+  ++G  DLL+ +    L+  Q+ Y   I
Sbjct: 201 VLRRAKHRAEAASRAKSAFLANMSHEIRTPMNGVMGMADLLRET---DLDEDQALYATTI 257

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + V+A  + L      L   L+E+   +  K  +  + + +  
Sbjct: 258 RNSAEALLGIINDVLDYSKVEADRLSLQLDGFDLERCLHEIILLMQPKARDQGVDVWLDY 317

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSS 729
           D  L + +  D  R+ Q+ + ++ NA+ F+ +G     V+  +A    +   +V++ G  
Sbjct: 318 DLFLPTRLRGDGGRIRQVLTNLIGNAVKFTPEGHVLIRVVGVSAEGRAEIHVTVEDTGIG 377

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I  D    VF  F  V  A   +  G GLGL+I +  I L GG + + S+
Sbjct: 378 IAPDKIGHVFGEFNQVEEAQNRRFEGTGLGLAIAQKLIRLMGGEIWVESA 427


>gi|332525738|ref|ZP_08401885.1| periplasmic sensor hybrid histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332109295|gb|EGJ10218.1| periplasmic sensor hybrid histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 1206

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERAL-TEKNEALRK------ADEIKNSFVQHVSYELRSPLTNI 587
           N QT+     +    R + AL   + EA R       A+  K+ ++  +S+ELR+PL +I
Sbjct: 711 NRQTLALQREIESHARTDAALQAAREEADRARGHAEAANRAKSRYITTISHELRTPLNSI 770

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  LL+  +  ++   + Q V  I      LL+L+   LD+A +++G + L+   +  
Sbjct: 771 LGYAQLLEEDE--AMPPHRRQAVAVIRRGGDHLLSLIEGTLDIARIESGKLALDVRPMRF 828

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            D L E+ +    +     +  +   DG+L + V AD +RL QI   +L NA+ F+  G 
Sbjct: 829 ADGLAEIARMFELQAAGRGLAFRFAVDGRLPAVVRADEKRLRQILINLLGNAIKFTQAGQ 888

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRG-VGLGLSIVESF 764
            V L+ A       F +++ G  +  D    VF  F   +A  GQ  G  GLGL+I    
Sbjct: 889 -VTLRVAHQREMARFEIEDTGPGMTADELARVFEPFERGSAASGQSVGSTGLGLTIARML 947

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
             L GG ++++S     TT   R+
Sbjct: 948 CELMGGEMTVASEPGRGTTFRIRL 971


>gi|284052622|ref|ZP_06382832.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 574

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 10/223 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E   A   A + K+ F+  +S+E+R+P++ ++G  +LL  + L     +Q  Y   I 
Sbjct: 355 LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHL---TPQQKDYTPTIY 411

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  LL ++N+ILDL+ ++AG   L      L D L  V   ++ K  +  + + ++ +
Sbjct: 412 RRAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILLE 471

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
             +  ++  D  RL Q+   +++NA+ F+  G  +I    R    D  +  FS+++ G  
Sbjct: 472 PNIPRYLKGDGMRLQQVLINLVNNAIKFTQSGHIIIRLTPRLINQDQINIYFSIEDTGLG 531

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
           I +++   +F  F   S+A   Q  G GLGLSI +  +NL GG
Sbjct: 532 ISDELQPQLFQPFSPASSATNRQYSGTGLGLSICQHLVNLMGG 574


>gi|268609962|ref|ZP_06143689.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus flavefaciens FD-1]
          Length = 468

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 10/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+    + L  A+ +KN F+  VS+ELR+PLT I G+ + L     G+      + V  I
Sbjct: 230 AINHMADELSTAEAMKNEFISSVSHELRTPLTAIKGWAETLMLDG-GTSPDTMKKGVGVI 288

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672
              +  L  +V ++LD + +  G   L  +T+   D+L E+  ++     +     K I 
Sbjct: 289 VNETERLQQMVEELLDFSRMQNGHFTLQSATM---DILAELGDAVLIYSEKARKETKEII 345

Query: 673 -SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             + ++  FV  D+ R+ Q+F  ++ NA+ +SS G  + +KA     + + SV++ G  I
Sbjct: 346 YDEPEMLPFVFGDKNRIRQVFINVIDNAVKYSSAGDRITIKAYESGDNVVVSVRDTGVGI 405

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            +     V  +F    H   RRG G+GL++ +  I++HGG +SI S  EG+ TT+   +P
Sbjct: 406 KQSDLAKVKTKFYKANH--TRRGSGIGLAVADEIISMHGGTLSIDSEGEGLGTTVTITLP 463

Query: 790 SKE 792
           +K+
Sbjct: 464 AKK 466


>gi|29377732|ref|NP_816886.1| sensor histidine kinase [Enterococcus faecalis V583]
 gi|227555641|ref|ZP_03985688.1| sensor histidine kinase [Enterococcus faecalis HH22]
 gi|229547173|ref|ZP_04435898.1| sensor histidine kinase [Enterococcus faecalis TX1322]
 gi|229550743|ref|ZP_04439468.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|256618569|ref|ZP_05475415.1| sensor histidine kinase [Enterococcus faecalis ATCC 4200]
 gi|256957057|ref|ZP_05561228.1| sensor histidine kinase [Enterococcus faecalis DS5]
 gi|256963941|ref|ZP_05568112.1| sensor histidine kinase [Enterococcus faecalis HIP11704]
 gi|257078734|ref|ZP_05573095.1| sensor histidine kinase [Enterococcus faecalis JH1]
 gi|257081306|ref|ZP_05575667.1| sensor histidine kinase [Enterococcus faecalis E1Sol]
 gi|257083964|ref|ZP_05578325.1| sensor histidine kinase [Enterococcus faecalis Fly1]
 gi|257087794|ref|ZP_05582155.1| sensor histidine kinase [Enterococcus faecalis D6]
 gi|257088439|ref|ZP_05582800.1| sensor histidine kinase [Enterococcus faecalis CH188]
 gi|257417381|ref|ZP_05594375.1| sensor histidine kinase [Enterococcus faecalis AR01/DG]
 gi|257418882|ref|ZP_05595876.1| sensor histidine kinase [Enterococcus faecalis T11]
 gi|257421303|ref|ZP_05598293.1| two component system sensor histidine kinase [Enterococcus faecalis
           X98]
 gi|293384816|ref|ZP_06630661.1| sensor histidine kinase [Enterococcus faecalis R712]
 gi|293388238|ref|ZP_06632757.1| sensor histidine kinase [Enterococcus faecalis S613]
 gi|294781207|ref|ZP_06746554.1| sensor histidine kinase/response regulator [Enterococcus faecalis
           PC1.1]
 gi|300861520|ref|ZP_07107604.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|307268870|ref|ZP_07550235.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX4248]
 gi|307273945|ref|ZP_07555155.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0855]
 gi|307277354|ref|ZP_07558452.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX2134]
 gi|307283994|ref|ZP_07564164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0860]
 gi|307286510|ref|ZP_07566609.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0109]
 gi|307289983|ref|ZP_07569909.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0411]
 gi|312901343|ref|ZP_07760624.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0470]
 gi|312902990|ref|ZP_07762179.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0635]
 gi|312908858|ref|ZP_07767797.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis DAPTO 512]
 gi|312952976|ref|ZP_07771832.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0102]
 gi|312979499|ref|ZP_07791181.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis DAPTO 516]
 gi|29345200|gb|AAO82956.1| sensor histidine kinase [Enterococcus faecalis V583]
 gi|44934165|gb|AAS49402.1| sensor histidine kinase [Enterococcus faecalis]
 gi|227175218|gb|EEI56190.1| sensor histidine kinase [Enterococcus faecalis HH22]
 gi|229304176|gb|EEN70172.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|229307755|gb|EEN73742.1| sensor histidine kinase [Enterococcus faecalis TX1322]
 gi|256598096|gb|EEU17272.1| sensor histidine kinase [Enterococcus faecalis ATCC 4200]
 gi|256947553|gb|EEU64185.1| sensor histidine kinase [Enterococcus faecalis DS5]
 gi|256954437|gb|EEU71069.1| sensor histidine kinase [Enterococcus faecalis HIP11704]
 gi|256986764|gb|EEU74066.1| sensor histidine kinase [Enterococcus faecalis JH1]
 gi|256989336|gb|EEU76638.1| sensor histidine kinase [Enterococcus faecalis E1Sol]
 gi|256991994|gb|EEU79296.1| sensor histidine kinase [Enterococcus faecalis Fly1]
 gi|256995824|gb|EEU83126.1| sensor histidine kinase [Enterococcus faecalis D6]
 gi|256997251|gb|EEU83771.1| sensor histidine kinase [Enterococcus faecalis CH188]
 gi|257159209|gb|EEU89169.1| sensor histidine kinase [Enterococcus faecalis ARO1/DG]
 gi|257160710|gb|EEU90670.1| sensor histidine kinase [Enterococcus faecalis T11]
 gi|257163127|gb|EEU93087.1| two component system sensor histidine kinase [Enterococcus faecalis
           X98]
 gi|291077898|gb|EFE15262.1| sensor histidine kinase [Enterococcus faecalis R712]
 gi|291082385|gb|EFE19348.1| sensor histidine kinase [Enterococcus faecalis S613]
 gi|294451670|gb|EFG20125.1| sensor histidine kinase/response regulator [Enterococcus faecalis
           PC1.1]
 gi|295112308|emb|CBL30945.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase. [Enterococcus sp.
           7L76]
 gi|300848981|gb|EFK76734.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|306498977|gb|EFM68469.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0411]
 gi|306502383|gb|EFM71660.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0109]
 gi|306503365|gb|EFM72614.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0860]
 gi|306505988|gb|EFM75160.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX2134]
 gi|306509253|gb|EFM78313.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0855]
 gi|306514786|gb|EFM83336.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX4248]
 gi|310625296|gb|EFQ08579.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis DAPTO 512]
 gi|310629117|gb|EFQ12400.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0102]
 gi|310633658|gb|EFQ16941.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0635]
 gi|311287681|gb|EFQ66237.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis DAPTO 516]
 gi|311291576|gb|EFQ70132.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0470]
 gi|315026613|gb|EFT38545.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX2137]
 gi|315030107|gb|EFT42039.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX4000]
 gi|315033600|gb|EFT45532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0017]
 gi|315036265|gb|EFT48197.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0027]
 gi|315148282|gb|EFT92298.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX4244]
 gi|315151247|gb|EFT95263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0012]
 gi|315153732|gb|EFT97748.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0031]
 gi|315155042|gb|EFT99058.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0043]
 gi|315158669|gb|EFU02686.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0312]
 gi|315163392|gb|EFU07409.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0645]
 gi|315165669|gb|EFU09686.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX1302]
 gi|315168476|gb|EFU12493.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX1341]
 gi|315172093|gb|EFU16110.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX1342]
 gi|315576188|gb|EFU88379.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0309B]
 gi|315582999|gb|EFU95190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0309A]
 gi|323479198|gb|ADX78637.1| two-component system, sensor histidine kinase [Enterococcus
           faecalis 62]
          Length = 393

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S     +  +  Y+ A    LL
Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             V+D+ +   V    + ++ +T  +  L+ ++      +  + N++I+V ++       
Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 274

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L+++F+ +LSNA+ +   G  ++++  +   + I +V+N+G +IP+     +F+R
Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGL+I +S + LHGG++  + SD+  T+    +P
Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383


>gi|220907214|ref|YP_002482525.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863825|gb|ACL44164.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1419

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 8/242 (3%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AER    + E   +A+ +K+ F+  +S+ELRSPL  I+G+T LL++        K ++ +
Sbjct: 1037 AERQARAEAE---QANRVKDEFLAVLSHELRSPLNPILGWTKLLQSQPFSP--DKAAKAL 1091

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  +  +   L+ D+LD++ +  G M LN +++ L  ++    +++        I+++
Sbjct: 1092 ATIERNVKLQAQLIEDLLDVSRILQGKMVLNVTSVNLVSVIEAALETVRLSAETKAIQLE 1151

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             + + ++   + D  RL QI   +L+N + F+ +G  V ++  R +      V++ G  I
Sbjct: 1152 TLMEPEIDPILGDPARLQQIVWNLLTNGVKFTPQGGRVTVRLQRVDTFAQLQVQDTGKGI 1211

Query: 731  PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787
                   VF+ F        R+  G+GLGL+IV      HGG V+  S  EG+  T   R
Sbjct: 1212 NAAFLPHVFDYFRQEDGTTTRKFGGLGLGLAIVRHLTEQHGGTVAADSPGEGLGATFTIR 1271

Query: 788  IP 789
            +P
Sbjct: 1272 LP 1273


>gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 744

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 22/264 (8%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD   AE  L    E  ++A+  K+ F+  +S+E+R+P+  +IG T LL  +KL   +
Sbjct: 172 DVTDRKDAEEKLAIALEQAKEANRAKSLFLATMSHEIRTPMNGVIGMTKLLLDTKL---D 228

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  Y E + AS   LLN++NDILD + ++AG + L+ +     ++L  V + +A +  
Sbjct: 229 PAQRSYAEAVRASGEALLNIINDILDYSKIEAGKVTLDEAAFDPRNVLESVAELLAPRAF 288

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  + I   IS       + D  R+ QI   +  NA+ F+ +G  V L+  R+       
Sbjct: 289 DKGLEIVTEISPSVPRMLMGDEARIRQILLNLAGNAIKFTGRGG-VALRLLREETSPAGR 347

Query: 719 -----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
                       I  V++ G  + E   + +F+ F        RR  G GLGL+I +  +
Sbjct: 348 RIDGKREGRIGLILEVEDTGIGMDEQAREHIFDDFAQADQSHARRYEGTGLGLAITKRLV 407

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
               G + + S +   +     +P
Sbjct: 408 GAMEGRIEVESEEGRGSVFRAHLP 431


>gi|90408287|ref|ZP_01216452.1| putative sensor histidine kinase/response regulator [Psychromonas
           sp. CNPT3]
 gi|90310588|gb|EAS38708.1| putative sensor histidine kinase/response regulator [Psychromonas
           sp. CNPT3]
          Length = 919

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 13/229 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A ++K+ F+ ++S+ELR+PL  +IGF   LLKT     + S Q  Y+E I  S+  LL
Sbjct: 285 QQAAKVKSEFLANMSHELRTPLNGVIGFARQLLKTK----MTSSQVDYLETIERSAANLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSF 680
           +++NDILD + ++AG + L +    L D ++E    +A   HE  + + V+ D  +  S 
Sbjct: 341 HIINDILDFSKIEAGKLMLEHIPFDLRDCIDETMYLLAPSAHEKGLELSVLIDANVTQSV 400

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+ +G   V ++   D    I    S+ + G  I +    
Sbjct: 401 LGDAMRLQQILTNLIGNAIKFTQQGDIEVKIQQVADKKGLITLKISISDTGIGISKQQQA 460

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
            +F  F    ++   Q  G GLGL I +  I    G +   S  D+G T
Sbjct: 461 QLFCAFGQADSSITRQYGGTGLGLVITQKLIQKMQGEIHFYSVEDQGST 509


>gi|91773722|ref|YP_566414.1| PAS/PAC sensor hybrid histidine kinase [Methanococcoides burtonii
           DSM 6242]
 gi|91712737|gb|ABE52664.1| Response regulator domain-containing multisensor signal
           transduction histidine kinase [Methanococcoides burtonii
           DSM 6242]
          Length = 510

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 124/248 (50%), Gaps = 2/248 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N T+    E  L++ NE L  + ++K+ F+ ++++ELR+PL +I GF++LL   +LG+LN
Sbjct: 252 NTTERKNIEEELSKANEKLHSSHKMKDEFLANINHELRTPLISIKGFSELLYNERLGNLN 311

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q + +E +  +S  L +L+  +  ++ +    +K  +S + + ++L  +K+ +  ++ 
Sbjct: 312 ERQKRTMESVVRNSERLQHLIESLFYVSEMQNETIKYTFSFLNIKNILETLKKDMFPQID 371

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +       L     + + +  +   +L NA+ ++  G ++ L A+ +NGD    +
Sbjct: 372 HKGLEVNADIPDSLPPIHGNTKYIESVLMHLLDNAIKYTPSGKSISLIASEENGDIHIII 431

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  IP DM   +F+                  GL I +  I  H G + I+S     
Sbjct: 432 KDTGKGIPTDMLTHIFSEVPEEGDECDLCYSNQDYGLIICKKIIEAHRGSIWINSEVNHG 491

Query: 782 TTINCRIP 789
           T I+ ++P
Sbjct: 492 TEIHVKLP 499


>gi|265990697|ref|ZP_06103254.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994529|ref|ZP_06107086.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 3 str. Ether]
 gi|262765642|gb|EEZ11431.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 3 str. Ether]
 gi|263001481|gb|EEZ14056.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 1 str. Rev.1]
          Length = 532

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K   +  VS+ELR+PL +IIGF+D+L     G L S +Q +Y   I  S   LL LVN +
Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAV 311

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ +
Sbjct: 312 LDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAV 371

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNRF 742
            QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   F
Sbjct: 372 QQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTPF 430

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V   N++   + G GLGLS+V+  +  H G + + S     T +  R+P
Sbjct: 431 VRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 479


>gi|219851553|ref|YP_002465985.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
            palustris E1-9c]
 gi|219545812|gb|ACL16262.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
            palustris E1-9c]
          Length = 1267

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 154/341 (45%), Gaps = 15/341 (4%)

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            D R    NPAF       E   + G  +R++A     ++ E  G          F++E K
Sbjct: 938  DYRFLEINPAFERQTGLHE---AQGRLMRDLAPNHEEHWFEIYGTIALTGEPVRFENEAK 994

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +L    E     V  Y +    + +  + F ++T+  +AE  L    + L+ +++    F
Sbjct: 995  ALNRWYE-----VSAYRVGGPESRRVAILFNDITERKQAEEVLKTIADNLKASNQELEQF 1049

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
                S++L+ PL  +  F+ +L+    G L++   +++ YI   +  +  L+ND+L  + 
Sbjct: 1050 AYIASHDLKEPLRMVTCFSQILERQYKGQLDADADEFIGYIVDGALRMEALINDLLLYSR 1109

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            ++ G+  +    + +   + E   ++   + E N RI   + G + S   D  +++Q+F 
Sbjct: 1110 INQGMRPV--ERVDMKHAIEEAISNLIIPIRERNARI---TRGAMPSIQGDLSQMVQLFQ 1164

Query: 693  KILSNAMDF--SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
             ++ NAM +    +   + + A R    + FSVK+NG  I     + +F  F     + +
Sbjct: 1165 NLIGNAMKYCPEEREPEIWINAERTGKGWTFSVKDNGLGIDPAYHEQIFMIFRRLHTKAE 1224

Query: 751  RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              G G+GL++V+  +  HGG + + S +   +T    IP K
Sbjct: 1225 YPGTGIGLAVVKRIVERHGGRIWVESEEGSGSTFLFTIPEK 1265


>gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1258

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 18/264 (6%)

Query: 526 LEYSIIPLPN----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +EYS  P+        T++TF ++T+  RA+  L +  +    A + K  F+ ++S+E+R
Sbjct: 566 VEYSTTPVLKDGTVVGTVVTFRDITERKRADALLHQALDRAEAASQAKADFLANMSHEIR 625

Query: 582 SPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +P+  IIG + L LKT     LN +Q  YV  I  S   LL ++NDILD + ++AG + +
Sbjct: 626 TPMNAIIGMSHLALKTE----LNPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSV 681

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNA 698
             + + L+ +L+ V   I+ K     + +   V SD      V D  RL QI     +NA
Sbjct: 682 EKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVP-NDMVGDPLRLGQILINYANNA 740

Query: 699 MDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + F+  G  V+ ++ A D G+ +   F V++ G  +  +    +F  F        R+  
Sbjct: 741 VKFTETGEIVVAVRLAEDLGEAVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYG 800

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL+I      L  G V + S
Sbjct: 801 GTGLGLAISRKLAELMDGEVGVES 824


>gi|296112383|ref|YP_003626321.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           RH4]
 gi|295920077|gb|ADG60428.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           RH4]
          Length = 988

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+ ++S+ELR+PL +I GF +LL  ++ G L  +Q+ YV+ I  SS  LL LVND
Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685
           +LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D  
Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F  
Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 RR  G GLGL I +    L GG +
Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526


>gi|163756235|ref|ZP_02163350.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
 gi|161323847|gb|EDP95181.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
          Length = 782

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 14/256 (5%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNII 588
           P+     ML F  + D  +  R +    EA     K+ + K +F+ ++S+E+R+PL  I+
Sbjct: 371 PIYINNKMLFFCVIRDISKDIRNMIRIEEARVIAEKSAKAKTTFLSNMSHEIRTPLNVIL 430

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G ++L           K+ + +E I  S+  LL +VNDILD + ++AG  KLN   +  N
Sbjct: 431 GLSELFNRKDFTG-TEKEYENIEAIRFSTENLLMIVNDILDFSKIEAG--KLNVQKVDFN 487

Query: 649 --DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             +L++ + +    K  E  +   + I++      V D+ RL QI + ++ NA+ F+ KG
Sbjct: 488 FTELISNLNKGFRLKAEEKGLDFSINITNSIPKYIVGDQYRLSQILNNLIGNAIKFTKKG 547

Query: 706 ---STVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSI 760
                +  K   D      F+++++G  IP++   S+F  F    H  Q+ +G GLGLSI
Sbjct: 548 FINVNITAKVLEDKTLQLYFTIEDSGYGIPKENLNSIFESFYQTYHSEQKPKGTGLGLSI 607

Query: 761 VESFINLHGGHVSISS 776
            +  ++L GG++++ S
Sbjct: 608 TKELVSLLGGNLTVKS 623


>gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
 gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris
            marina MBIC11017]
          Length = 1660

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 133/285 (46%), Gaps = 27/285 (9%)

Query: 532  PLPNAQTML-TFVNVTDSVRAERALTEKNEALRK------------------ADEIKNSF 572
            P  N   +L T+ +++D  +AE+AL + NE L                    A+  K+ F
Sbjct: 1148 PFDNTVGILGTYEDISDRKQAEQALKQVNEELEHRVVLRTKELQAAKEAADAANRAKSDF 1207

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            + ++S+ELR+PL  I+G+  +LK      L     Q +  I  S   LL L++DILD+A 
Sbjct: 1208 LANMSHELRTPLNGILGYAQVLKRDH--HLLPCHQQALNTIHQSGEHLLTLIDDILDIAK 1265

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIF 691
            ++A  ++LN S I    LL  +      +  E NI+ +   +D       +D++ L QI 
Sbjct: 1266 IEARKLELNISDIHFPSLLESIVNLFQMRAQEKNIQFVYRPADSLPQGIQSDKKCLRQIL 1325

Query: 692  SKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
              +LSNA+ F+ +G    S  I +         F++ + G  I  D  + +F+ F     
Sbjct: 1326 LNLLSNAIKFTDQGQVTLSVEIEQHTSQQIKLKFTITDTGIGISPDQIEQIFHPFEQVGD 1385

Query: 748  RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +R  G GLGLSI    + L GG +   S +E  +T    IP K
Sbjct: 1386 LNRRAEGTGLGLSISRQLVELMGGTLQAESCEEKGSTFWFSIPYK 1430


>gi|30026152|gb|AAO44958.1| ethylene receptor [Arabidopsis lyrata subsp. lyrata]
          Length = 532

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            + DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 329 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407


>gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1193

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 10/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+  +AE ALTE   A   A E K +F+ ++S+E+R+P+  +IG   LL     G
Sbjct: 531 TLQDITERKQAEIALTEAKHAAEAAAEAKAAFLANMSHEIRTPMNAVIGLAHLLLK---G 587

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ KQ  Y+  I  S  +LL L+NDILD + ++AG M L  +   L+D+L+ V   +  
Sbjct: 588 DLSGKQRDYISRIHGSGQMLLGLINDILDFSKIEAGRMVLEETEFALDDVLDNVTSVLLH 647

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN-- 716
           +  E  + ++ + +  + +  + D  RL QI   +L NA+ F++ GS TV ++    N  
Sbjct: 648 RAQEKGLIMQYVVEPDVPTNLLGDPLRLAQILINLLGNALKFTASGSITVFVRRLPGNTA 707

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +    V++ G  + ++  + +F  F        R+  G GLGL+I +    L  G + 
Sbjct: 708 RAELEIDVQDTGVGMSQEQQQVLFQAFSQADSSITRKYGGTGLGLTICKRLAQLMRGDIW 767

Query: 774 ISS 776
           ++S
Sbjct: 768 VTS 770


>gi|71899102|ref|ZP_00681266.1| PAS [Xylella fastidiosa Ann-1]
 gi|71731096|gb|EAO33163.1| PAS [Xylella fastidiosa Ann-1]
          Length = 510

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++ERA   +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +  +   
Sbjct: 245 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 297

Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662
           Y  +  I++S+ +   L++D+LDL+++  G M+L    + L + + EV    +Q + +K 
Sbjct: 298 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 357

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               +R   +    LG    D  RL QIF  +LSNA+ F+     + ++   D   F  S
Sbjct: 358 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 413

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I  +    +F+RF        R   G+GLGL+IV+S + +HGG+V  +S   G
Sbjct: 414 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 473


>gi|326561891|gb|EGE12226.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           7169]
 gi|326563438|gb|EGE13703.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           12P80B1]
 gi|326568888|gb|EGE18957.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC1]
 gi|326569188|gb|EGE19249.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC7]
 gi|326578011|gb|EGE27875.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           O35E]
          Length = 988

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+ ++S+ELR+PL +I GF +LL  ++ G L  +Q+ YV+ I  SS  LL LVND
Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685
           +LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D  
Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F  
Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 RR  G GLGL I +    L GG +
Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526


>gi|54297835|ref|YP_124204.1| transmission sensor LetS [Legionella pneumophila str. Paris]
 gi|53751620|emb|CAH13039.1| Legionella transmission sensor LetS [Legionella pneumophila str.
           Paris]
          Length = 910

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IGFT++L  SKL  L   Q  YV+ I +S+  LL+++NDIL
Sbjct: 298 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 354

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + +DAG + L+   + +   ++EV    +   H+  I +  I+D  +   V  D  R+
Sbjct: 355 DFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 414

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740
            QI S +++NA+ F+  G  +I        D     +F++ + G  I PED  K  + FN
Sbjct: 415 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++  R +  G GLGL I +       G +S++S     +T + RI
Sbjct: 475 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 521


>gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1157

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R++++K   L    + K+ F+ ++S+ELR+PL +I+    +LK +K  +L   Q +Y 
Sbjct: 471 ARRSISQKMRELETTGKYKSEFLANMSHELRTPLNSILVLARILKDNKAQTLTEDQIKYS 530

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  +   LL L+NDILDL+ +++G +++    + ++++L +V+   A      NI   
Sbjct: 531 TVIFNAGNDLLTLINDILDLSKIESGKLEILNEKVKVSEILKDVESLFAEVAKNKNITFT 590

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNG 727
              +  +  ++  D  R  Q+   +LSNA  F+S+  +V + A  D    +   S+K++G
Sbjct: 591 TQQNNNVPEYILTDMVRSQQVIKNLLSNAFKFTSENGSVSVIANLDETGKNLALSIKDSG 650

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             IP D  K +F  F        R+  G GLGLSI     +L GG + + S
Sbjct: 651 IGIPYDKQKLIFEAFQQADGSTSRKYGGTGLGLSISRELTHLLGGAIKLKS 701


>gi|303248431|ref|ZP_07334690.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490142|gb|EFL50061.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1117

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 141/286 (49%), Gaps = 17/286 (5%)

Query: 518 LELL----SDSVLEYSIIPL-PNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKN 570
           LELL    S  V+ YS +P+    +T L    V++T+    ER+L    EA   A+  K 
Sbjct: 681 LELLHQNGSTVVVLYSAVPIQAYGETCLLSVLVDITERKAIERSLRRAKEAAEAANRAKT 740

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+E+R+P+  I+G    L  +    L  KQ+Q +  I  +   LL L+NDILDL
Sbjct: 741 EFLSTMSHEIRTPMNTILGMAQALSAA---DLPPKQTQAIRAIEIAGGSLLTLLNDILDL 797

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQ 689
           + +++G + +      +  L   +   +       +I +++ +++    S      R+ Q
Sbjct: 798 SQIESGGLIIEEKPCDIGKLAGRIVDMMRPDAAAKDIALRLDLAEDLPPSVSLSPDRIRQ 857

Query: 690 IFSKILSNAMDFSSKGSTVIL---KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
           +   +L NA+ F+ +GS V+    +A    GD++   V++ G  IP D    +F+RF   
Sbjct: 858 VLVNLLGNAVKFTHQGSIVLAVGREAGPTGGDWLRLDVRDTGIGIPVDKLPVIFDRFTQA 917

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                R   GVGLGL+I +  ++L GG + + ++    +T   R+P
Sbjct: 918 DATTSRLYGGVGLGLAISKKLVDLMGGSIRVETAVGQGSTFTVRLP 963


>gi|264678720|ref|YP_003278627.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           CNB-2]
 gi|262209233|gb|ACY33331.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           CNB-2]
          Length = 924

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 12/267 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L ++ +P  +   ++  + ++T     ER+L     A  + +E K  F   +S+E+R+P
Sbjct: 400 ILTFASMPYQSEDVVICGISDITVQKEVERSLRSAKLAADQVNEAKTMFFATLSHEIRTP 459

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G  +LL    L  LN +Q QY+  I  SS  LL  +ND LDL+ ++AG  +L  +
Sbjct: 460 LYGIVGTMELLA---LTGLNVQQQQYLNTIQQSSATLLRTINDTLDLSRIEAGRQELYIA 516

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFS 702
            +   +LL  V  + A + H   + I  + D G   S  AD  R+LQ+ + ++ NA+ F+
Sbjct: 517 EVSPAELLERVVANFAARAHGKGLLIYGLCDLGVPSSVRADSARILQVLNNLVGNAVKFT 576

Query: 703 SKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
             G   +  +A +         F V + G  I  +    +F  +       +    G GL
Sbjct: 577 EAGRVAVRVSAENLQPGRVRLRFQVADTGVGIRAEAQAQLFEPYFRADASAKEDISGSGL 636

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTT 783
           GL+I     +L GG +S+  S++G+ T
Sbjct: 637 GLAICRRLSDLMGGSLSV-VSEKGLGT 662


>gi|17549399|ref|NP_522739.1| composite two-component sensor histidine kinase and response
           regulator hybrid transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431652|emb|CAD18329.1| probable composite two-component transcriptional regulatory (sensor
           histidine kinase and response regulator hybrid)
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 676

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 128/257 (49%), Gaps = 13/257 (5%)

Query: 543 VNVTDSVRAE--RAL-----TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +++T+  +AE  RAL     +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL 
Sbjct: 266 IDITEHRQAEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA 325

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    ++   +E I  S+   ++L++D+LD++ + +G + L    + L D+L   +
Sbjct: 326 MRPYDEAMFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 383

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           ++I     +  I +       +     D  RL Q+F  +L+NA+ F+ +G  V +     
Sbjct: 384 ETIEPMARQKQITVDT-EYLPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAG 442

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
               + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH GH++
Sbjct: 443 ADGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHIT 502

Query: 774 ISSSDEGV-TTINCRIP 789
            +SS   + TT+   +P
Sbjct: 503 AASSGADLGTTMAVTLP 519


>gi|326571860|gb|EGE21865.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC8]
          Length = 988

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+ ++S+ELR+PL +I GF +LL  ++ G L  +Q+ YV+ I  SS  LL LVND
Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685
           +LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D  
Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F  
Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 RR  G GLGL I +    L GG +
Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526


>gi|295083878|emb|CBK65401.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 541

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 139/256 (54%), Gaps = 8/256 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F N+T+ ++  R L E  E   +++ +K++F+ ++S+E+R+PL  I+GF++++  + 
Sbjct: 288 LLRFENITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 346

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+  ++   +N+L+  + + +
Sbjct: 347 --EEEEEKQEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 404

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K    +++I             DR RL Q+     +NA+ F+SKGS  +     +  D
Sbjct: 405 QEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASD 464

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I F VK+ G  IP D    VF RFV  N+     +G GLGL+I    +   GG +   S
Sbjct: 465 EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGAES 521

Query: 777 SDEGVTTINCRIPSKE 792
            +   +    +IP  E
Sbjct: 522 KEGEGSCFWFKIPRTE 537


>gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 567

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 10/232 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+E+R+P+  I+GF DL   ++   LN++QS+Y+  + +++  L+ L+
Sbjct: 182 ANRAKSEFLANMSHEIRTPMNAILGFVDLTLATE---LNAEQSKYLGMVRSAAQSLMRLL 238

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
            D+LD++ +++G + +      L  +L      ++ K  +  ++++  I  G     V D
Sbjct: 239 EDVLDISKIESGQLVVEQQPFSLASVLRSAVDLLSVKASDKALQLRYQIPAGVPEVLVGD 298

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+   +LSNA+ F+  G  V    IL+         F V++ G  I  D  ++VF
Sbjct: 299 ANRLTQVLVNLLSNAVKFTDAGEVVLGLDILEQDHRQISLRFYVRDTGIGIAPDRLEAVF 358

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F        RR  G GLGL+IV   +   GG V + S     +T    +P
Sbjct: 359 EKFYQVDSSSTRRFGGSGLGLAIVRQLVENMGGRVWVESELGKGSTFYVTLP 410


>gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
 gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
          Length = 1367

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 124/241 (51%), Gaps = 12/241 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T     E+ +    E   K+ ++K  F+ ++S+E+R+P+  IIG  DL+  +    L 
Sbjct: 828  DITQKKLVEQEVIRAKEIAEKSLKVKERFLANMSHEIRTPMNGIIGMIDLMMDT---PLE 884

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +KQ +Y+  I  SS  LLN++NDILDL+ ++AG M L+   + +  ++ +V      +  
Sbjct: 885  NKQQEYMYTIKKSSETLLNILNDILDLSKLEAGKMALHPKPMDIRFMVEKVYTLFLQQAK 944

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
              N  +    D K+  F+ AD  RL+QI S ++SNA+ F+  G   I       G+    
Sbjct: 945  AKNNFLSYQVDPKIPYFLEADETRLIQIISNLMSNAIKFTEDGQVAIKFTLASKGELSVH 1004

Query: 719  FIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             +  V ++G  I PED  + +F+ F  + N+      G GLGL+I +    L  G + + 
Sbjct: 1005 LLVEVADSGLGISPEDQNR-LFSTFTQLDNSSSKSYSGTGLGLAISKELCRLMNGDIGVI 1063

Query: 776  S 776
            S
Sbjct: 1064 S 1064


>gi|66045621|ref|YP_235462.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. syringae B728a]
 gi|63256328|gb|AAY37424.1| Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. syringae B728a]
          Length = 1003

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    ++++  +G     N    +
Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQSWAVGDTHFENRNIRR 584

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 644

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  + +F V ++G 
Sbjct: 645 LNCTAAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQNEVLFRVSDDGI 703

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 704 GIPAEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 762

Query: 789 P 789
           P
Sbjct: 763 P 763


>gi|326576541|gb|EGE26449.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           CO72]
          Length = 988

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+ ++S+ELR+PL +I GF +LL  ++ G L  +Q+ YV+ I  SS  LL LVND
Sbjct: 319 QAKSAFLANISHELRTPLNSIDGFINLL--ARKGELTGEQNLYVQTIKKSSAHLLALVND 376

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQ 685
           +LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D  
Sbjct: 377 VLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDSL 436

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F  
Sbjct: 437 RVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFGQ 496

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 RR  G GLGL I +    L GG +
Sbjct: 497 GDLSVTRRYGGTGLGLVISKQLTQLMGGSI 526


>gi|304406984|ref|ZP_07388638.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304343971|gb|EFM09811.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 482

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 173/389 (44%), Gaps = 62/389 (15%)

Query: 430 NTLVKVQGETIDHLS-------EGVAVFGPDGRIKLSNPAFRSL--------WKTEENRL 474
           ++L+K      DHLS       + V  F  +G + +SNP    L        W+ EE +L
Sbjct: 119 DSLIKDLNHEKDHLSSILRSMSDAVVTFDAEGSVTMSNPPGEKLIEKWNRLDWEDEEAKL 178

Query: 475 S--PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +  PG  +R                DL++ +I    D    +      + + V    + P
Sbjct: 179 TGVPGP-LR----------------DLYSRVIIDGIDSSSKIN-----VRNGVWSVVMAP 216

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L + ++      V  +V   R +TE+     K ++++  FV +VS+E+R+PL+ + G+++
Sbjct: 217 LKSDES------VRGAVAVMRDVTEEF----KLEKLRRDFVANVSHEIRTPLSMLQGYSE 266

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            +          ++ + V+ I   S  +  LV D+LDLA ++AG  +L      +++L+ 
Sbjct: 267 AI-LDGFADSPEERDELVQVIHDESVRMGRLVKDLLDLARMEAGHTELKLMPCDIDNLVK 325

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V +   T   E +IR+   + +  L    AD  RL Q+ + +L NA+  +  G+ + + 
Sbjct: 326 RVHRKFLTFAKERDIRLVCELPEQHLFMESADEDRLEQVLTNLLDNALRHTPAGAVITVS 385

Query: 712 A-------ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSI 760
                    R    ++   +K+ G  IP +    +F RF     +  RG   G GLGL+I
Sbjct: 386 GKMRAEELGRSEPAYVELQIKDEGEGIPAEDLPYIFERFYKADKSRKRGSSSGTGLGLAI 445

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
           V++ +  H GH+ + S     TT    +P
Sbjct: 446 VKNIVESHEGHIHVDSLVGKGTTFTLLLP 474


>gi|17646115|gb|AAL40902.1|AF145973_1 ethylene receptor [Petunia x hybrida]
          Length = 738

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 313 ESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  EV   I 
Sbjct: 373 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVLNLIK 429

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
                  + + +     L  F + D +R++Q+   ++ NA+ FS +GS  +   A     
Sbjct: 430 PIASVKKLFVTLSLSSDLPEFAIGDEKRIMQVLLNVIGNAVKFSKEGSVSVSAVAAKSES 489

Query: 714 -RDNGDFIF-------------SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD     F              VK+ GS I P+D+ K +FN+F  N         G GL
Sbjct: 490 LRDPRAPEFFPVQSENHFYLRVQVKDTGSGISPQDIPK-LFNKFAQNQALATNNSGGSGL 548

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F NL  GH+ I S   G
Sbjct: 549 GLAICKRFANLMEGHIWIESEGLG 572


>gi|237713589|ref|ZP_04544070.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406312|ref|ZP_06082861.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646555|ref|ZP_06724191.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806620|ref|ZP_06765454.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229446311|gb|EEO52102.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355015|gb|EEZ04106.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638078|gb|EFF56460.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446156|gb|EFG14789.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 541

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 139/256 (54%), Gaps = 8/256 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L F N+T+ ++  R L E  E   +++ +K++F+ ++S+E+R+PL  I+GF++++  + 
Sbjct: 288 LLRFENITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT- 346

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ ++V+ IS+++ +LL L++DILDL+ ++AG M+  ++   +N+L+  + + +
Sbjct: 347 --EEEEEKQEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQM 404

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K    +++I             DR RL Q+     +NA+ F+SKGS  +     +  D
Sbjct: 405 QEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASD 464

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I F VK+ G  IP D    VF RFV  N+     +G GLGL+I    +   GG +   S
Sbjct: 465 EIYFYVKDTGIGIPADKIDKVFERFVKLNSF---IKGTGLGLAICRVIVERLGGVIGAES 521

Query: 777 SDEGVTTINCRIPSKE 792
            +   +    +IP  E
Sbjct: 522 KEGEGSCFWFKIPRTE 537


>gi|163792358|ref|ZP_02186335.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159182063|gb|EDP66572.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 528

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 5/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
           A   L+   +A   AD  K+ F+  +S+ELR+PL  IIGF++++     G + ++K   Y
Sbjct: 245 ASEELSRTRDAALTADRSKSMFLAAMSHELRTPLNAIIGFSEIMARQLYGPIGHAKYRDY 304

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +S   LL L++D+LDL+ V+AG + L    + + + +    + +  +  ++ I +
Sbjct: 305 ANDIRSSGDHLLALIDDVLDLSRVEAGKLVLRREPLDVVEQIESCCRLVQGRATDSGIDL 364

Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNG 727
           +   +     + + DR R  QI   +L+NA+ F+  G +V +    D  G  +  V + G
Sbjct: 365 RFAPAANPSATILGDRVRFRQILLNVLTNAVKFTDAGGSVQVDIGDDTAGTVVIRVADTG 424

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +D  + VF  F      G R   GVGLGL++  + +  H G ++I+S+    TT+ 
Sbjct: 425 IGMSDDDLERVFRPFEQAGVSGARAVEGVGLGLALSRALVREHDGTLNIASAPGRGTTVT 484

Query: 786 CRIPS 790
              P+
Sbjct: 485 LSFPT 489


>gi|221065883|ref|ZP_03541988.1| histidine kinase [Comamonas testosteroni KF-1]
 gi|220710906|gb|EED66274.1| histidine kinase [Comamonas testosteroni KF-1]
          Length = 936

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 137/278 (49%), Gaps = 14/278 (5%)

Query: 516 GTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           G LEL    V++ +  P+        + T  +VT   + E +L    +A   A++ K  F
Sbjct: 404 GDLELEDGRVVQRTFTPMTYCGGPAVLCTINDVTKLKQTELSLLNAMQAAEAANQAKTLF 463

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+PL  I+G  +LL    L     +Q QY++ +  SST+LL+ +ND LDL+ 
Sbjct: 464 LTTMSHEIRTPLYGILGTLELLS---LTGATEQQQQYLDTLRHSSTVLLSTLNDTLDLSR 520

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           ++AG M L    + L ++L+ V  +   +    N+R+   +       V  D  RL QI 
Sbjct: 521 IEAGYMTLERRPLALLEVLDNVVSTFCVRAERKNLRLYCTASVNTPLLVLGDVTRLRQIL 580

Query: 692 SKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNA 746
             ++SNA+ F+  G  V+        + +    F V + G  I  +    +F+  F +++
Sbjct: 581 DNLVSNAIKFTVSGHIVLRLRSTPVEKSHVQLEFEVADTGIGIAAEHLPQLFDPYFRTDS 640

Query: 747 HRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
              Q  +G GLGLSI      + GG ++ ++S+ G+ T
Sbjct: 641 DIDQLIQGTGLGLSICSRLSQMMGGELA-ATSELGIGT 677


>gi|307578718|gb|ADN62687.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 510

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++ERA   +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +  +   
Sbjct: 245 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 297

Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662
           Y  +  I++S+ +   L++D+LDL+++  G M+L    + L + + EV    +Q + +K 
Sbjct: 298 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 357

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               +R   +    LG    D  RL QIF  +LSNA+ F+     + ++   D   F  S
Sbjct: 358 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 413

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I  +    +F+RF        R   G+GLGL+IV+S + +HGG+V  +S   G
Sbjct: 414 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 473


>gi|220906024|ref|YP_002481335.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219862635|gb|ACL42974.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 816

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 142/312 (45%), Gaps = 20/312 (6%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDE-----RKSLQGTLELLSDSVLEYSII------ 531
           I  T +   N+     L+  + T          R S++  + L     ++YS++      
Sbjct: 484 IVPTSTDQENQPPASLLYQPLPTVLPSPQVEAIRASMRQAIALEQTCTVDYSLVVGDREV 543

Query: 532 -------PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                  P+     +    ++T+  RAE  L    E  ++ +E+K+ FV   S+E R+PL
Sbjct: 544 WYSACISPINGDSVIFVARDITEQHRAEEELARTLEKEKQLNELKSRFVSMTSHEFRTPL 603

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I+  T+LL++        +  +++E I  +   +  L+N +L L+  +AG ++ +  +
Sbjct: 604 TTILSSTELLQSHSHKWGEPRDLKHLERIHTAVERMTELLNGVLVLSKAEAGRLEFHPQS 663

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L     ++ + + +   E+ +   +   G       D + L  I   +LSNA+ +S +
Sbjct: 664 LNLEQFCRDLVEDLQSSAPEHQLLFSLT--GNCTQVEMDEKLLQHILPNLLSNAIKYSPR 721

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G +V  +    +    F +++ G  IP      +F  F    + G   G GLGL+IV+  
Sbjct: 722 GGSVRFEVTCTSTSVCFQIQDQGIGIPAADLPHLFESFHRAKNVGNISGTGLGLAIVKKS 781

Query: 765 INLHGGHVSISS 776
           ++LHGG +S++S
Sbjct: 782 VDLHGGTISVTS 793


>gi|148359459|ref|YP_001250666.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
 gi|148281232|gb|ABQ55320.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
          Length = 910

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IGFT++L  SKL  L   Q  YV+ I +S+  LL+++NDIL
Sbjct: 298 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 354

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + +DAG + L+   + +   ++EV    +   H+  I +  I+D  +   V  D  R+
Sbjct: 355 DFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 414

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740
            QI S +++NA+ F+  G  +I        D     +F++ + G  I PED  K  + FN
Sbjct: 415 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFTITDTGIGISPEDQTKLFTAFN 474

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++  R +  G GLGL I +       G +S++S     +T + RI
Sbjct: 475 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 521


>gi|58580321|ref|YP_199337.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578743|ref|YP_001915672.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58424915|gb|AAW73952.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188523195|gb|ACD61140.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 678

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 14/241 (5%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613
           + +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +    + Y  +  I
Sbjct: 287 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGHTTYKGLSVI 341

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKV 671
           ++S+     L++D+LDL+++  G ++L   ++ L + + E    Q +A +  +  + + V
Sbjct: 342 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILELHV 401

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                L   + D  RL Q+   +LSNA+ F+     + +   RD+G  + SV ++G  I 
Sbjct: 402 PPTPCL--VLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIA 459

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
            +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T   R+
Sbjct: 460 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 519

Query: 789 P 789
           P
Sbjct: 520 P 520


>gi|83643693|ref|YP_432128.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631736|gb|ABC27703.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 1263

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 9/242 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T V++T    A+  LT+  +A   A   K+ F+  +S+E+R+P+  ++G  +L+  SK  
Sbjct: 552 TAVDITAQRNAQLELTQAKDAAEAAARAKSDFLATMSHEIRTPMNGVLGMLNLVLQSK-- 609

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q + V+   +S+  LL+L+NDILD + VDAG ++L      L   L+E   ++A 
Sbjct: 610 -LDSEQLRKVKIAKSSAESLLSLINDILDFSKVDAGKLELELLDFDLRHHLDEFAGTMAL 668

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  E ++ + +       S V  D  RL QI + ++SNA+ F+++G  VI    +  GD 
Sbjct: 669 RAQEKDLELVLDQSAVEQSMVRGDPGRLRQILTNLVSNAIKFTAEGEIVIRCQLQPEGDH 728

Query: 720 IF---SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +    SV + G  IP D    +F+ F  V  +   Q  G GLGL+I +    L  G +++
Sbjct: 729 LLLTVSVSDTGIGIPADKIGGLFDPFTQVDASTTRQFGGTGLGLAICKRLSELMEGGITV 788

Query: 775 SS 776
            S
Sbjct: 789 HS 790


>gi|21232277|ref|NP_638194.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66767589|ref|YP_242351.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|21114041|gb|AAM42118.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66572921|gb|AAY48331.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
          Length = 1194

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+  + +E+R+P+T ++G ++LL  ++L   + KQ  Y E I  + 
Sbjct: 813  KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQL---DHKQRSYTESIRRAG 869

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            + LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G L
Sbjct: 870  SHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEVGLL 928

Query: 678  GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
            G   A  D  R+ QI   +LSNA+ F+ +G   + L          F V + G  I  D 
Sbjct: 929  GDITASGDPTRIRQILLNLLSNAIKFTERGVVGLKLSTLGSYQGLRFEVADTGPGINADQ 988

Query: 735  CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F RF   +  +   R  G GLGL+I +      GGH+ + S
Sbjct: 989  KARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1033


>gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
 gi|45047732|emb|CAF30859.1| Sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
          Length = 639

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 133/244 (54%), Gaps = 10/244 (4%)

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M T +N++D      AE      NE L++ D++K+  +  VS+ELR+PLT+I G+ +L+ 
Sbjct: 381 MATQINISDDKLKKHAEELKISYNE-LKELDKLKSELIAVVSHELRTPLTSIKGYVELVL 439

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +G++N  Q + ++    +   L  L+  +LDL+ ++ G +++    + L  ++ +V 
Sbjct: 440 DGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVI 499

Query: 656 QSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           + +     E NI++ K + D    +  AD+ R+ Q+ + ++ NA+ FS    ++++    
Sbjct: 500 EYLKPLATEKNIKLNKEVED---IAIEADKDRITQVLTNLIENAIKFSPANESILVSGVL 556

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           ++      V + G+ IP+   + +FNRF  V ++ + ++ G GLGL++ +S +  H G +
Sbjct: 557 EDEHIHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSI 616

Query: 773 SISS 776
            + S
Sbjct: 617 WVES 620


>gi|186685940|ref|YP_001869136.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468392|gb|ACC84193.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1575

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 36/260 (13%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +AE AL    E    A+  K++F+ ++S+ELR+PL  I+GF  L++     +LN +Q   
Sbjct: 1071 KAEEALRIAKETAETANRSKSAFLANMSHELRTPLNAILGFAQLMERDT--TLNKRQRDS 1128

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +  I+ S   LLNL+ND+L+++ ++AG + LN ++  L+ LL E++Q    +  +  + +
Sbjct: 1129 LATINRSGEHLLNLINDVLEMSKIEAGRIVLNPTSFDLHRLLQEMQQMFQVRAKDKKLSL 1188

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
                   L  ++  D  +L Q+   +L NA+ F++ G  V L+ +   G+          
Sbjct: 1189 SFELAPNLHQYILTDESKLRQVLINLLGNAIKFTNTGG-VTLRVSLGIGEQGSRGEVALS 1247

Query: 719  ---------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGL 756
                                   F +++ G  IP +   ++F  FV  A   Q   G GL
Sbjct: 1248 LSPLPLCPSAPLPLVPNSQSLISFKIEDTGLGIPTEELDNLFQPFVQTASARQVMEGTGL 1307

Query: 757  GLSIVESFINLHGGHVSISS 776
            GL+I   F+ L GG + + S
Sbjct: 1308 GLTISRQFVQLMGGDIRVHS 1327


>gi|218129844|ref|ZP_03458648.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
 gi|217987954|gb|EEC54279.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
          Length = 629

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 13/250 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E  L +  E   ++D +K++F+ ++S+E+R+PL  IIGF+ LL   +    +
Sbjct: 379 DITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLLPYME----D 434

Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +K+ + Y+  I+ ++ +LLN++N++LDL+ ++AG M+L      L++L++E      + +
Sbjct: 435 AKEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNV 494

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  + +K            D  R+ QI S +LSNA+  +++G   +      +G  I S
Sbjct: 495 PE-GVTLKKRYPASPFLIEQDSMRIKQILSNLLSNALKNTTQGYVEVSYETEQSGVKI-S 552

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGV 781
           V + G  IP++    +F RF       Q  G GLGLSI +S I    G + ++S   EG 
Sbjct: 553 VTDTGRGIPQEKLGVIFERFEKVDSYIQ--GAGLGLSICKSIIEQMNGTIEVASVLGEGS 610

Query: 782 T---TINCRI 788
           T   T  CRI
Sbjct: 611 TFTVTFPCRI 620


>gi|160888759|ref|ZP_02069762.1| hypothetical protein BACUNI_01177 [Bacteroides uniformis ATCC 8492]
 gi|156861658|gb|EDO55089.1| hypothetical protein BACUNI_01177 [Bacteroides uniformis ATCC 8492]
          Length = 649

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L     A+ K  ++K+SF+QH+++E+R+PL +I+GF+ LL   KL  +  +  +YVE 
Sbjct: 412 RKLEAARRAVEKMSQVKSSFIQHITHEIRTPLNSIVGFSTLLAQEKLDDVEKR--EYVEQ 469

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++T LL+L+ +IL++A +D+ + ++    I ++    E  +    ++ +  + ++ +
Sbjct: 470 VEGNNTYLLSLMENILNIADMDSRVWEMPREEIEVDACCKECIEGFRPEL-KPGVELEYV 528

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI 730
               + +F A RQ L  +   +L NA+ F+ +G  + +    D    +  F +++ G  I
Sbjct: 529 PASGIMAFYAARQWLKMVLVSLLDNAVKFTEEGH-IRVSCEEDKSRHVLRFVIEDTGIGI 587

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             D    +F RF         +G GLGL+I    + L GG + +  +  G        P 
Sbjct: 588 RPDESDRIFERFYKVDTFT--KGSGLGLAIANEIMELVGGRIYLDDTYCGGCRFIVEWPM 645

Query: 791 KE 792
           K+
Sbjct: 646 KD 647


>gi|324325943|gb|ADY21203.1| sensor histidine kinase, putative [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 355

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 132/242 (54%), Gaps = 13/242 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL +   +  QY
Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEECEQY 170

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+ S + +  L+ ++      ++ + N+  
Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSF 230

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 231 CIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKEIVIQVSKRDMNVEIEIKNFGQC 289

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           IP++    VF +F    +RG++       G G+GL+I  S    H G +++ S++ E V 
Sbjct: 290 IPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAEFHKGDITVRSNEKETVF 345

Query: 783 TI 784
           TI
Sbjct: 346 TI 347


>gi|312135254|ref|YP_004002592.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311775305|gb|ADQ04792.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 467

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 128/238 (53%), Gaps = 8/238 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +++ V +   +TEK E L   + ++ SF+ +VS+ELRSPLT+I GF + +    +   + 
Sbjct: 226 ISELVSSFNYMTEKLENL---ETMRKSFISNVSHELRSPLTSIRGFVEGILDKTIP--DE 280

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  ++ E       ++ E
Sbjct: 281 KRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSVIAEELIKFEKRIEE 340

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            NI I V  D +L    ADR  + ++   +L NA+ ++  G  + + +   NG    +++
Sbjct: 341 KNIDIDVQVDEEL-VVKADRDLISRVIHNLLDNAIKYNKVGGKIYIYSEVANGKAYITIQ 399

Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IPE + K ++ RF   +  R    GVGLGLSIV+  I LH  ++ +  S+EG+
Sbjct: 400 DTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHKQNIWV-ESEEGI 456


>gi|290968484|ref|ZP_06560023.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781480|gb|EFD94069.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 554

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 11/239 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +TE+ EA R   E    F  +VS+EL++PL  IIG+TDL+++    S      ++V YI 
Sbjct: 322 ITEQAEAERGRRE----FTANVSHELKTPLQGIIGYTDLMESGLAKS--EDIPRFVGYIK 375

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++ L+ L+ DI+ L+ +D G   +  + + L  L +EV +++       NI +     
Sbjct: 376 KEASRLVTLIEDIIRLSQLDEG-TDMPVAEVSLGHLADEVCKTLFDAAKSKNISLS--WS 432

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G  G+    ++ L +I   +  NA+ ++  G +V +  + D+ +    V + G  IP + 
Sbjct: 433 GADGNMYGVKRLLYEIVYNLCDNAITYNRSGGSVKITVSEDDKNVRLEVADTGIGIPAEH 492

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + VF RF  V  +H  Q  G GLGLSIV+  +  H G +++ S     T I    P K
Sbjct: 493 QERVFERFYRVDKSHSKQSGGTGLGLSIVKHAVAYHHGKIALESEPNKGTVITVAFPKK 551


>gi|30026190|gb|AAO44977.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
          Length = 532

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            + DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 329 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407


>gi|298249232|ref|ZP_06973036.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297547236|gb|EFH81103.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 391

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 136/266 (51%), Gaps = 19/266 (7%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q  L   +   + +AE  L E N  L++A+ IK+ F+   S+ELR+P+T I G   LL
Sbjct: 126 NYQQQLLHASQEAAQQAEE-LAESNARLQQANRIKDQFLSIASHELRTPVTRIHGSVQLL 184

Query: 595 KTSKLGSLNSKQSQYVEYISASSTI---------LLNLVNDILDLATVDAGIMKLNYSTI 645
           +      L  + +Q+ E++    T+           +L+ND+LD+ T+ +G + ++ +  
Sbjct: 185 QR----RLKRQSAQHPEWLPMYDTLDKVNSQIQQFTDLINDLLDINTLRSGKIPVHLAPC 240

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  L  +V +   ++  + +I +++ +D  +    AD +R  Q+ S +++NA+ +S   
Sbjct: 241 DLRCLCQQVIEEQQSQT-DRSIDLRLPADPVVVQ--ADDRRFSQVVSNLVTNALKYSPAN 297

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVES 763
           + + ++ ++  G+ I +V N    + ++  K++F  F     A      G GLGL+I + 
Sbjct: 298 TPIRVEISQRPGEAILAVYNESPVLSQEQQKTLFEPFYRSPEARSSATPGWGLGLAICKE 357

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +  HGG + + SS+E  TT    +P
Sbjct: 358 IVMRHGGRIWVESSEEKGTTFFVALP 383


>gi|302672251|ref|YP_003832211.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302396724|gb|ADL35629.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1031

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 138/268 (51%), Gaps = 15/268 (5%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +T +   + T  +R    L E   A   A++ K SF+ ++S++ R+P+  I GF  L+  
Sbjct: 493 RTAIALYDRTQEIRRNHQLQEALNAAETANKAKTSFLANMSHDFRTPMNAITGFNLLI-- 550

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K      K  +Y   IS +S  LL+++ND+LD++ +++G   L+   + +  LL E+  
Sbjct: 551 DKHAEEPDKVKEYTHKISLASQNLLSMLNDVLDMSKIESGKTTLDIKEVPIGLLLEEINS 610

Query: 657 SIATKM-HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILK 711
            I+ +  ++N   I  I D +   F+ D+QR+ +I   IL NA+ ++ +G     T+   
Sbjct: 611 VISFQAKNKNQEYIVKIEDMQHDIFMGDKQRINEILMNILGNAIKYTPEGGRIEFTINES 670

Query: 712 AARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFIN 766
            +   G  +  F++K+NG  +  +    +F+ F S   +G  +   G GLG++I +S + 
Sbjct: 671 PSSSEGFQNVTFTIKDNGIGMKPEYKDKIFDAF-SREEKGATKTIQGTGLGMAITKSLVE 729

Query: 767 LHGGHVSISSSDEGVTT--INCRIPSKE 792
           L GG + + S +   +T  +N R+ + E
Sbjct: 730 LMGGTIRVDSEEGKGSTFIVNLRLKAVE 757


>gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC
           12478]
          Length = 1405

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R+ +A  ++ E L + D  K +F  ++S+E R+PLT IIG    L+    G L+ +  
Sbjct: 346 SARSYQAQQQRAEELAELDRAKTTFFSNISHEFRTPLTLIIGPVAELRRRTPG-LDEQAR 404

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q +E +  +   L  LVN +LD + ++AG M+ +Y  + L  +  ++     + +    +
Sbjct: 405 QELEVVHRNGLRLAKLVNTLLDFSRIEAGRMRAHYEPVDLAAVTADLASVFRSAVERAGL 464

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              +++  +L   V  DR    ++   +LSNA+ F+ +GS  +     D+   + +V + 
Sbjct: 465 EF-IVNCVRLDEPVYVDRDMWEKVVLNLLSNALKFTFEGSIAVRVGGGDSA-AVVTVSDT 522

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +P      +F RF  V         G G+GL++V+  + L GG +++ SS  G TT 
Sbjct: 523 GVGVPAAEMPRLFERFHRVETVQARSNEGSGIGLALVKELVGLLGGSITVDSSQAGGTTF 582

Query: 785 NCRIP 789
             R+P
Sbjct: 583 TIRLP 587


>gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 788

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 135/273 (49%), Gaps = 21/273 (7%)

Query: 536 AQTMLTFVNVT-----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           A+++L    V      + ++AE AL     A   A++ K+ F+ ++S+E+R+PL  ++G 
Sbjct: 369 AESILQLAGVRAGGELERLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGM 428

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL T+   + N +Q +Y+     S+  L  L++DILD++ ++AG M +      + + 
Sbjct: 429 LQLLDTT---APNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNT 485

Query: 651 LNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            + +K+  A +     + ++   + D  L   + D  RL QI   ++ NA+ F+ KG   
Sbjct: 486 WDSIKELFALEARRKGLILEFGCVKDLPL-LLIGDEVRLRQILFNLVGNAVKFTEKGKIR 544

Query: 709 I-------LKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           I       L +++ +    + +V + G  IPE+  K +F  FV       RR  G GLGL
Sbjct: 545 IDASLLPLLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGL 604

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SIV   + L GG ++I S+    T     +P K
Sbjct: 605 SIVSRLVKLLGGEIAIDSTPGEGTAFYISLPFK 637


>gi|170750082|ref|YP_001756342.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656604|gb|ACB25659.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1124

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 18/254 (7%)

Query: 551 AERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           A R  T   EA R    +A   K+ F+  +S+E+R+PL  I+G+ DLL      ++ ++ 
Sbjct: 584 ALRTATRDAEAARTEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDGD--AIQNED 641

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I +S   LL +VNDILD + ++AG + L+  T  L  +++     +      + 
Sbjct: 642 RRRLELIQSSGAALLTVVNDILDFSKIEAGELTLDPVTFPLVSIVDGTVSIVRGSALRSG 701

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--------NG 717
           + I+   D  L +F V D  RL Q+   +L+NA+ F+ +GS  ++    D         G
Sbjct: 702 LAIEARIDPALPTFVVGDAGRLRQVLLNLLNNAVKFTPEGSVTVIVEREDAGGAPDGRPG 761

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           D + FSV + G  I       +F RF        RR  G GLGL+I    + L GG + +
Sbjct: 762 DTVRFSVVDTGIGIAPAQQDRLFKRFSQVDGSISRRFGGTGLGLAISRHLVTLMGGEIGV 821

Query: 775 SSSDEGVTTINCRI 788
            S +   +T   R+
Sbjct: 822 ESREGAGSTFWFRL 835


>gi|148359718|ref|YP_001250925.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
 gi|148281491|gb|ABQ55579.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
          Length = 676

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 148/276 (53%), Gaps = 23/276 (8%)

Query: 529 SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           S +P+ N + +++  V +T  V     LT+  EA   A++ K +F+ ++S+++R+PLT +
Sbjct: 243 SKVPITNLSGSIVGLVGITVDVTE---LTKAKEAAEAANQAKTAFIANMSHDIRTPLTGV 299

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG ++LL+ +     + +Q +    +  S   LLN++NDILD   V AG M      I  
Sbjct: 300 IGMSELLENT---VKDPEQKEEAHMLHDSGEELLNMLNDILD--DVHAGFMDKEDIRIET 354

Query: 648 NDLLNEVKQSIATKMHENNIRIK----VISDGK-LGSFV-ADRQRLLQIFSKILSNAMDF 701
            DL   ++  +  K+      +K    ++  GK +  ++ +DR+++ ++   +L NA+ F
Sbjct: 355 FDLYQCIEDLV--KLERPTTVMKHLELIVHIGKSVPRYIQSDRKKIHRVLLNLLGNAIKF 412

Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           + KG   I    L+ +  N    F V + G  IP  + + VF RF  +S +++G  +G G
Sbjct: 413 TPKGQITIQVACLEVSGKNIHLQFKVSDTGIGIPTSLQEKVFERFFRISPSYKGIYKGHG 472

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL I +S++NL GGH+++ S +   TT    IP +
Sbjct: 473 LGLHIAQSYVNLLGGHIALISEEGKGTTFYFDIPCQ 508


>gi|30026180|gb|AAO44972.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
 gi|30026182|gb|AAO44973.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
          Length = 532

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            + DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 329 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407


>gi|56416592|ref|YP_153666.1| histidine kinase sensor protein [Anaplasma marginale str. St.
           Maries]
 gi|255002934|ref|ZP_05277898.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Puerto Rico]
 gi|56387824|gb|AAV86411.1| histidine kinase sensor protein [Anaplasma marginale str. St.
           Maries]
          Length = 468

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 162/347 (46%), Gaps = 28/347 (8%)

Query: 465 SLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           SL + +   L+ G  +R + A     T      + DG  +F  +I ++    ++L+G   
Sbjct: 122 SLSEAQLAALANGDVLRGVVADGRIFTVFPIVLQDDGPKVFLQVIKNYGKLSQALRGVHG 181

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT----------EKNEALRKADEIK 569
           +L        +IP+  A      + V    R+ R L+          E+ E   +    K
Sbjct: 182 ML--------VIPVGVAILSCVCLVVLFYRRSARLLSSQYDANLELQEQKETAERESVSK 233

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDIL 628
           + F+ +VS+ELR+PL +IIGF++++++  LG + S++  +Y+  I  S   LL+L+NDIL
Sbjct: 234 SQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLINDIL 293

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D +  +A  + + +    L  +++     +  +  +  + +K     +    +AD +R+ 
Sbjct: 294 DFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADPKRMK 353

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP-EDMCK--SVFNRFVSN 745
           Q+   +LSN++ F+ +G  V L A       I  + + G  I  +D+ K  SVF +   +
Sbjct: 354 QVIINVLSNSVKFTPEGGLVKLCAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFGQ-ADS 412

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            H  +  G GLGL + +  + L  G  SI S     T +    P K+
Sbjct: 413 THSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 459


>gi|300773122|ref|ZP_07082991.1| response regulator/sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759293|gb|EFK56120.1| response regulator/sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 489

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 11/261 (4%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           IIP+   + ++ +V     +  ++ + +K          K+ F+   S+EL++PLT+I  
Sbjct: 237 IIPIREQEIVVKWVGTFTDIDDQKQIEKK----------KDEFLSIASHELKTPLTSIKA 286

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +  LL+ +     NS  S+Y+  +    + L +L+ D+LD++ +D G +K+N       +
Sbjct: 287 YIQLLERTLNAEQNSATSKYLSTVQNQVSKLNSLIADLLDISKIDNGKLKMNKKLFNFEN 346

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           LL+ V  +I      +NIRI+   D      + D  R+ Q+    L+NA+ +S     VI
Sbjct: 347 LLSNVVDTIYHTHENSNIRIEREGDVIDQPVLGDEIRIEQVLINYLTNAIKYSPDSKRVI 406

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLH 768
           ++  ++N      V + G  IPE   K++FN+F        + +G+G+GL I    I  H
Sbjct: 407 IRTEQENTQIKVDVTDFGIGIPEHKQKNIFNKFYRVEESSLKFQGLGIGLYICSEIIRQH 466

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G   I S     +T    IP
Sbjct: 467 NGTFGIQSQTGQGSTFYFTIP 487


>gi|237793656|ref|YP_002861208.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|229262135|gb|ACQ53168.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 615

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++   F+ ++S+EL++PL  I     LL   +      KQ +Y++ I  +   L+ 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMK 415

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD   +D+G +KLN     +  L+ E+  S+ +      I I   +D +      
Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTDVEEKIIAV 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741
           D  ++ +I   +LSN++ F++ G  + +K  +D G+ ++  VK+ G  IP D  +S+F R
Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGHIFVK-IKDCGENVYIHVKDTGVGIPSDKLESIFER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  V    +  + G G+GL +V+SF+ +H G V I S     T    ++P+
Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLPA 585


>gi|197337759|ref|YP_002158682.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197315011|gb|ACH64460.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 798

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 136/277 (49%), Gaps = 16/277 (5%)

Query: 527 EYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKN-----EALRKADEIKNSFVQHVSYEL 580
           +YSI    N +  LT F N  +++ A+R   EK      E    A++ K +F+ ++S+E+
Sbjct: 243 DYSIKLSENGKDELTVFSNEMNTLIAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEI 302

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIG + +L  +KL  +   Q  Y+  I  SS  LL L+NDILDL+ ++AG   +
Sbjct: 303 RTPLNGIIGMSGVLAETKLTPI---QLDYLNTIETSSQTLLVLINDILDLSKIEAGNFAI 359

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAM 699
                 + +++ +       K  E N+ + +     + +F+  D  R+ Q+   + SNAM
Sbjct: 360 YSQPSNVREVIFDTLSIDIAKATEKNLDLHIHISPDVPNFLTLDEHRIKQVLMNLTSNAM 419

Query: 700 DFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
            F+ KG    S        + G    +VK++G  I  +  +++ N F+       RR  G
Sbjct: 420 KFTHKGFISISVSFSNRVENEGYLTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGG 479

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGL+I    I L GG + I S  E  +  + RI +
Sbjct: 480 TGLGLTITNQLIELMGGALDIESEQEKGSRFSFRIKT 516


>gi|312881713|ref|ZP_07741490.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370603|gb|EFP98078.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 927

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 121/222 (54%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKTS    L + Q+ Y++ I  S+  LL
Sbjct: 284 QEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTS----LTASQTDYLQTIEKSADNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +++ DILD + ++AG + L        + L EV    AT  HE  + + +  D K+    
Sbjct: 340 SIIKDILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLKVDPKIPLGL 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ N++ F+  G+   +V L++ + D+ +  F V++ G  I E    
Sbjct: 400 VGDPLRIQQILTNLVGNSIKFTEYGNIDVSVELRSQKEDSVELQFMVRDTGIGISERQQS 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        R+  G GLGL I +  ++  GG +S++S
Sbjct: 460 QLFQAFSQADASISRKYGGTGLGLVITQKLVSQMGGEISLTS 501


>gi|254462752|ref|ZP_05076168.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
 gi|206679341|gb|EDZ43828.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
          Length = 745

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 132/256 (51%), Gaps = 22/256 (8%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+ V+ E + T+     R A   K  F+  +S+E+R+P+  ++G  ++L+ SKL    ++
Sbjct: 203 TNQVKMEASSTQA----RLASRAKTDFLAAMSHEIRTPMNGVVGMVEILENSKL---TTE 255

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-- 663
           QS+ VE I  SST LL+++ +ILD++ ++AG ++L        ++L+  ++S  T  H  
Sbjct: 256 QSRIVETIRDSSTALLSIIENILDMSRIEAGKLELKLQK---TEVLSVFEKSADTLRHFA 312

Query: 664 -ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFS------SKGSTVILKAARD 715
             +++ + +  D  L  +++ D  RL QI   +LSNA+ FS       KG  ++     D
Sbjct: 313 EAHHVTLLMNYDPDLPKYMSCDSGRLRQIILNLLSNAIKFSKRPPEDPKGQVILTVGFSD 372

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
             D    V ++G  I E+   S+F+ F  +A   R +  G GLGL+IV   I    G + 
Sbjct: 373 KDDLKVEVSDDGIGIGEEFLSSLFDPFEQSAEVRRHEFGGSGLGLAIVSQLIEKLNGSIG 432

Query: 774 ISSSDEGVTTINCRIP 789
           + S     TT    +P
Sbjct: 433 VQSQRGQGTTFTVHLP 448


>gi|254445580|ref|ZP_05059056.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198259888|gb|EDY84196.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1300

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 126/242 (52%), Gaps = 20/242 (8%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R L    E   ++D +K++F+ ++S+E+R+P+  I+G  +++    L     ++  Y E 
Sbjct: 894  RELEVSKEKAERSDRLKSAFLANMSHEIRTPMNAIVGLLEIVHKEDL--PEDERETYAEV 951

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRI 669
            I  SS  L+ L++DILDL+ +++G   L      ++++  E+    + +  K  + ++ +
Sbjct: 952  IRQSSRTLMTLIDDILDLSRIESGEATLQLQPCRVDEVCEELYSLFRYVTKKESDGDVVL 1011

Query: 670  KVISDGKLGSFVA----------DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K++ DG  GS +           D  RL QI + +LSNA+ F+ KG  +    + + G  
Sbjct: 1012 KLVRDGVEGSLLNEARDEFCLEFDPVRLKQILTNLLSNAIKFTEKGEILFGYDSENLGSE 1071

Query: 720  I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +   F V ++G  IP+D  + +F+RF  V +      RG GLGL+I +    +  G + +
Sbjct: 1072 VRIRFFVSDSGVGIPQDHLEKIFDRFHKVEDPDGRVHRGTGLGLTISKRLSEMMSGVIEV 1131

Query: 775  SS 776
            +S
Sbjct: 1132 NS 1133


>gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 600

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 7/232 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K + ++  FV +VS+ELR+PLT+I  + + L     G+L  ++   +++  I++ +  +
Sbjct: 369 QKLENMRKEFVANVSHELRTPLTSIKSYAETLLD---GALEDRELAGKFLSVINSEADRM 425

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+L L+ +D   MK +   I   DL+    + +  +  E N  ++  + G+    
Sbjct: 426 TRLVKDLLQLSRLDNNQMKWDMQKISFEDLVRNCVEKVKFESEEKNQTLECFTIGEELEI 485

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           VAD+ R+ Q+   IL+NA+ ++ +G  + +   R   +    V ++G  IP +    +F 
Sbjct: 486 VADKDRMEQVVLNILTNAIKYTPEGGKITVYIGRMYSEVYVKVVDSGIGIPREDLGRIFE 545

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF     A   +  G GLGL+I +  +  H G +S++S     T +  ++P+
Sbjct: 546 RFYRTDKARSREMGGTGLGLAIAKEIVEAHKGSISVASEPGKGTEVTVKLPA 597


>gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
 gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
          Length = 1338

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 128/246 (52%), Gaps = 11/246 (4%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             + +  +  + E L++ D+IK+ F  +VS+ELR+PLT IIG  + +    L S  S  +Q
Sbjct: 807  AQQKEEIASQAEKLKEMDQIKSHFFSNVSHELRTPLTLIIGPAEQI----LHSAESTTTQ 862

Query: 609  -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             + + I +++  LL L+N +LD + +++G + L   T   +  L  +  S     ++ NI
Sbjct: 863  SHSKSILSNAQRLLKLINQLLDFSKLESGKLILQLKTGKFHVFLKNIIYSFELLANQKNI 922

Query: 668  RIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
             +K++   +  +G F  D  +L ++F  +LSNA+ F+ +   V ++  +        V +
Sbjct: 923  GLKLLLHQEEIMGEF--DHDKLEKVFFNLLSNALKFTPENGLVTIEVKQKEEMVQIKVSD 980

Query: 726  NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  IP      +F+RF  V  +      G G+GLS+V+  + LHGG++  SS  +  TT
Sbjct: 981  TGIGIPPQSLPFIFDRFYQVDGSQTRTHEGTGIGLSLVKELLELHGGNIKASSEVDKGTT 1040

Query: 784  INCRIP 789
               ++P
Sbjct: 1041 FFIQLP 1046


>gi|94313548|ref|YP_586757.1| two-component regulatory system sensor kinase [Cupriavidus
           metallidurans CH34]
 gi|93357400|gb|ABF11488.1| Two-component regulatory system, sensor kinase protein [Cupriavidus
           metallidurans CH34]
          Length = 983

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 7/234 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            ++ RA+R L +   A   A   + +F   +S+E+R+PL +++G  +L+     G L   
Sbjct: 366 AEAARAQRLLHQARLASDAAASARVAFFASMSHEIRTPLASLLGNMELVAR---GPLPPD 422

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   V  +  S+  LL +VND+LD + +D G + +    I + DLL+ +  + A      
Sbjct: 423 QRTRVGAMQVSAEGLLQIVNDVLDFSRIDVGELSIEPQPIAVTDLLSRIAVAHAPLAAGR 482

Query: 666 NIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +R I V           D  RL QI + +L NA  F+  G  V+L+A   +G     V 
Sbjct: 483 GLRFITVYGRDIPARLDLDPVRLTQIVNNLLGNAFKFTQAGK-VVLRARWADGALEIIVA 541

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  IP++    +F  F  V++    Q RG GLGLSI        GG +S+ S
Sbjct: 542 DTGIGIPDEYKDRLFQPFSQVADNRLAQARGTGLGLSICSRLAERMGGRISLDS 595


>gi|317474841|ref|ZP_07934111.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316908979|gb|EFV30663.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 1179

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++  E+K  F  +VS+ELR+PLT I G    LKT    +L+ K  +YVE +  ++  +L 
Sbjct: 651 QRLSELKIRFFTNVSHELRTPLTLIQGPIQELKTE---ALSVKGKKYVELMEKNTLHMLK 707

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LVN ILD   +  G M+L+ S   L +LL   ++       E  I ++   + +      
Sbjct: 708 LVNQILDFRKIQNGKMRLHVSCFNLTELLAFFEKEFMIMAEEKAINLQFCPEVEELMVWG 767

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
           D++RL  +   +LSNA  F+S G ++ I+    ++G   F  V++ G  IP++    +F 
Sbjct: 768 DKERLGTVVRNLLSNAFKFTSSGGSIRIVSGLAEDGKHCFIRVEDTGVGIPQNKLTEIFG 827

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           RF    NA     +G G+GL++ +  + LH G +  ++  +G
Sbjct: 828 RFSQADNAKGAYYQGTGIGLALSKEIVELHHGEIFAANGKQG 869


>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1248

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 124/243 (51%), Gaps = 10/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     + A+ +  +A  ++  +K+ F+ ++S+E+R+P+  IIG T LL  ++  
Sbjct: 572 TVEDITARRETDDAIKKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDTE-- 629

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ KQ  + + IS+S+  LL ++NDILD + ++AG++        L  ++    + +A 
Sbjct: 630 -LSPKQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELLAA 688

Query: 661 KMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           +     I +  ++      +   D  RL Q+ + ++ NA+ F+ KG  V+    ++N + 
Sbjct: 689 RAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDKGEVVVRANCQENAET 748

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                FSV + G  I  +  + +F  FV       RR  G GLGL+I +  +   GG + 
Sbjct: 749 HTTIRFSVTDTGIGISSEAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGGEIG 808

Query: 774 ISS 776
           ++S
Sbjct: 809 VTS 811


>gi|15837455|ref|NP_298143.1| two-component system, sensor protein [Xylella fastidiosa 9a5c]
 gi|9105761|gb|AAF83663.1|AE003925_3 two-component system, sensor protein [Xylella fastidiosa 9a5c]
          Length = 499

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 126/236 (53%), Gaps = 11/236 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++ERA   +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  ++ +   
Sbjct: 234 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIDEQHPC 286

Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           Y  +  I++S+ +   L++D+LDL+++  G M+L    + L + + EV       +    
Sbjct: 287 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLKMEVLDLVEQIREVIGLYEPVVDSKG 346

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            R+ + +       + D  RL QIF  +LSNA+ F+     + ++   D   F  SV ++
Sbjct: 347 QRLLLRASEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDS 406

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           G  I  +    +F+RF        R   G+GLGL+IV+S + +HGG+V  +S   G
Sbjct: 407 GDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGIG 462


>gi|330973157|gb|EGH73223.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 801

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    ++++  +G     N    +
Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQSWAVGDTHFENRNIRR 584

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACGLLVMLTAEKNIE 644

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  + +F V ++G 
Sbjct: 645 LNCTAAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQNEVLFRVSDDGI 703

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 704 GIPAEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 762

Query: 789 P 789
           P
Sbjct: 763 P 763


>gi|311696699|gb|ADP99572.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 1166

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R + E K+ F+ ++S+E+R+PL  IIG+ + L    L     + S   E +  S   
Sbjct: 549 ELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLSEPEKRSS--AETVVRSGRH 606

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+LVNDILD + +DA  + ++  ++ L +LL+E++   A +  E  +   +I +  L  
Sbjct: 607 LLDLVNDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLDFSIICEYPLPE 666

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            V  D  RL QI   +  NA+ F+ KGS +++++  RD    +  V + G  +  +    
Sbjct: 667 QVRTDPTRLRQIIINLCGNALKFTDKGSISLVVRCDRDQELLVARVVDTGIGMKPEQLGR 726

Query: 738 VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F+ F   S A   Q  G GLGLSI      + GG + ++S+
Sbjct: 727 LFDPFAQGSAAISRQYGGTGLGLSISRRLAEMLGGSIRVNST 768


>gi|254421413|ref|ZP_05035131.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188902|gb|EDX83866.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 396

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 180/406 (44%), Gaps = 64/406 (15%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE-----------N 472
           +T+  TL +     ++ + EGV     +G +   NPA  ++  W  E+           +
Sbjct: 7   QTELVTLRRQYQLILNSVGEGVYGLDLEGNVTFVNPAAAAMIDWDIEDLIGQSMHRVLHH 66

Query: 473 RLSPGTHIRNIA---------ATCSRYYNE----SDGWDLFAAII-TSFDDERKSLQGTL 518
               GTH    +          +  R  NE     DG +     I T   DE+K + G +
Sbjct: 67  SYLDGTHYHRESCPIYAALHDGSTHRVTNEVFWRKDGTNFPVEYISTPMRDEQKQVIGAV 126

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVN--VTDSVRAERA-LTEKNEALRKADEIKNSFVQH 575
               D      I     A+T+L   N  + + VR+  A L   N  LR+   +K+ FV  
Sbjct: 127 VTFRD------ITQRKWAETVLQQTNEDLEEKVRSRAAELYTANAHLRELSALKSRFVSM 180

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-----YVEYISASSTILLNLVNDILDL 630
           V +E R+PL NI      L  S LG  + K +Q     Y+  I+ +   + ++++DIL L
Sbjct: 181 VCHEFRNPLNNIA-----LSVSSLGRYDEKLTQTQKQKYLLGIATNVERMTHMIDDILVL 235

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQRLL 688
             ++A  + L+   I L D  ++    +  ++  NN R++    G+  S VA  D+  L 
Sbjct: 236 GKLEAKRLSLSPRPIDLADFCHQ----LLLEIQPNNRRLEFT--GRFRSLVAEIDQTLLR 289

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAH 747
            I + ILSNA+ +SS GS V L   +     IF +K+ G  I PED    +F  F    H
Sbjct: 290 SILTNILSNAIRYSSAGSLVQLSLYQRKHQAIFQIKDQGLGILPEDY-PYLFEPF----H 344

Query: 748 RGQR----RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG+      G GLGLSIV+ F+ L  G + + S     TT   R+P
Sbjct: 345 RGRNVSNIPGTGLGLSIVKQFVALQQGDIKVESQPGIGTTFKIRLP 390


>gi|168699644|ref|ZP_02731921.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
            2246]
          Length = 1284

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 147/286 (51%), Gaps = 12/286 (4%)

Query: 511  RKSLQGTLELLSDS---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            RK+++G +     +   + +Y  +P+  A   +  V  T     +R   E+   LR  D 
Sbjct: 860  RKAVRGEVPFTGTNGRRIYDYIFVPVLGANGEVEAVAGTTRDVTDRQAMEQE--LRDVDR 917

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K+ F+  +++ELR+PL  I     +++ +  G+ ++ + +    +      ++ +V+D+
Sbjct: 918  RKDEFIALLAHELRNPLAPIRNELQVIRLA--GTDSAARDRARAIMDRQLAHMVRIVDDL 975

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD++ ++   M+L  + + L +++    ++   ++ E    ++V    +     AD  RL
Sbjct: 976  LDVSRINRNKMELRRARVPLAEVIASAVETARPQIDEAGHALEVELPPEPVFLNADLTRL 1035

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             Q+FS +L+N+  ++ +G  V + AA    + + +V++NG  +P     ++F+ F S  +
Sbjct: 1036 AQVFSNLLTNSAKYTPRGGRVRISAAVVGDELVAAVRDNGIGVPAAALTTIFDMF-SQVN 1094

Query: 748  RGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            R   R   G+G+GL++V+    +HGG V+ +S+ EG  TT   R+P
Sbjct: 1095 RTTERSTGGLGIGLALVKGLTEMHGGTVTAASAGEGTGTTFTVRLP 1140


>gi|114562225|ref|YP_749738.1| hybrid sensory histidine kinase BarA [Shewanella frigidimarina
           NCIMB 400]
 gi|114333518|gb|ABI70900.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 952

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 22/243 (9%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSL 602
           NV   +  +RAL        +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L
Sbjct: 304 NVELDIAKKRAL--------EASRIKSEFLANMSHELRTPLNGVIGFARQLLKTP----L 351

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++ Q  Y++ I  S++ LL ++NDILD + ++AG M L      L + L E    IA   
Sbjct: 352 HTSQLDYIKTIERSASNLLGIINDILDFSKLEAGKMILEKMPFALRETLTETLTIIAGSA 411

Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDN 716
            E  + + +  D  +   V+ D  R+ QI + ++ NA+ F+ KGS VILK        DN
Sbjct: 412 QEKGLELVIDIDANVPESVSGDAMRVSQIITNLVGNAIKFTDKGS-VILKIHLVGQDEDN 470

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                 V + G  I E   + +F  F        RR  G GLGL I +  IN  GG +  
Sbjct: 471 ITLRCEVIDTGIGIDESQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINQMGGQIGF 530

Query: 775 SSS 777
           +S+
Sbjct: 531 TSA 533


>gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681]
 gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681]
          Length = 609

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 153/346 (44%), Gaps = 39/346 (11%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           ++S+GV     +GR+ L N    ++    EN ++ G HI                     
Sbjct: 270 NMSDGVVATDDNGRVILVNRRASAMLGVNENEMT-GRHI--------------------- 307

Query: 502 AIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           A++   D E      T  L S S       + P    + ++  V  T   R E  +T   
Sbjct: 308 AVLLGIDPEE-----TEALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTI 362

Query: 560 EALRKADE------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L+   E       +  FV +VS+ELR+PLT I  + + L    +      + ++V  I
Sbjct: 363 AVLQDVTEQEEMETTRREFVANVSHELRTPLTTIRSYAEALDDGAMAEPQVAE-RFVGVI 421

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  ++ LV D+L L+ +D+    L      + ++L+EV    + +M + +IR  +  
Sbjct: 422 RNETERMIRLVTDLLHLSRLDSNEAPLRMQPTDVMEMLDEVADRFSFQMKQKHIRSGMFV 481

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPE 732
           +  +G  V DR ++ Q+   ++SNA+ ++  G ++ ++A R++ G    SV++ G  IP+
Sbjct: 482 EQGIGKVVIDRDQIEQVLDNLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPK 541

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                +F RF  V  A      G GLGLSI    +  HGG + + S
Sbjct: 542 KDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLES 587


>gi|302383368|ref|YP_003819191.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193996|gb|ADL01568.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 605

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 10/219 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K++F+  +S+ELR+P+  ++G   LL +++L    S Q +Y+  I  S   LL+L+
Sbjct: 216 ANQAKSNFLGVISHELRTPMNGVLGAAQLLGSTRL---ESTQREYLSIIRNSGDNLLHLL 272

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD+  ++AG M      I L DL   V    A +     ++     +G+  S V  D
Sbjct: 273 NDILDMTKIEAGKMTFEVIDIGLEDLHRRVTGPFAAQAEAKGLQFVSTFEGETPSVVRGD 332

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
             R+ Q+   +LSNA+ F+  G+   +  +R   D    F FSV ++G+ I     + +F
Sbjct: 333 PLRVCQVIQNLLSNAVKFTDTGTIHYVVRSRRISDKRVAFDFSVTDSGAGIAPADLERLF 392

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F        RR  G GLGL+I     N+ GG + + S
Sbjct: 393 QPFTQVDASSTRRFGGTGLGLTIARRMANIMGGDIQVES 431


>gi|49480108|ref|YP_037335.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331664|gb|AAT62310.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 458

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++  + +F
Sbjct: 346 IQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|150018205|ref|YP_001310459.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
            beijerinckii NCIMB 8052]
 gi|149904670|gb|ABR35503.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
            beijerinckii NCIMB 8052]
          Length = 1036

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 41/380 (10%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGW 497
            +D++ + V VF  DG I L N       K  + R+S   HI   N     ++ + + DG 
Sbjct: 638  LDNMQDSVYVFNKDGEIFLKN-------KMAQKRMS---HIGDYNHPNDTNKKFLDLDGS 687

Query: 498  DLFAAIITSFD-------------------DERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            ++ A  I                       ++  S+ GT     +    Y II   N++ 
Sbjct: 688  EIMAEDIPHCKIIRGEYVKEYFMKIKIGECEQYVSVSGTPVFDKEGNFAYGII---NSRD 744

Query: 539  MLTFVNVTDS-----VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +  F+    +     ++   A  EKN+ L KA E+K+ F+  +S+E R+PL  I      
Sbjct: 745  ITDFMENQKALEKIQIKLLEAEREKNDTLEKALEMKDEFLSLISHEFRTPLNVINSAIQA 804

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            +       L+ +  +Y+  I  +S   L LVN+ILD+   +AG +K+N S I +  +   
Sbjct: 805  IDYFCSEELSDRLKKYLRMIRLNSFRQLRLVNNILDITRANAGRIKVNKSNIDIIFMTKA 864

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +  S+ T   + +I I   S  K      D ++  +I   +LSNA+ F+ +G ++ +K  
Sbjct: 865  IVDSVYTYASQKSIDIIFSSSVKQKIVGIDDEKYERILLNLLSNAIKFTPEGKSISVKIL 924

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                     VK+ G  IP++    +F RF  V ++   Q  G G+GLS+V+ F+   GG 
Sbjct: 925  SRRDGICIEVKDKGIGIPQEKADIIFERFGQVDSSLSRQAEGTGIGLSLVKKFVEAIGGS 984

Query: 772  VSISSSDEGVTTINCRIPSK 791
            +S+ S     +  +  +PS+
Sbjct: 985  ISLKSKVGRGSAFSIFLPSE 1004


>gi|330936909|gb|EGH41034.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 975

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 131/258 (50%), Gaps = 14/258 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+  + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 668 WIDITERKQLEQQLQEAMHLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 726

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L    SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L +L + V +  + +
Sbjct: 727 LGKIPSQGLQVAHRSATELIALIGESLDLARIEAGGMQLSLAVTSLQELFDGVIELFSAQ 786

Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718
             E  + +++   G+  G +  D  RL Q+   +L NA+ F+ +G+ V+ L    D+ + 
Sbjct: 787 AGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPES 846

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                 ++++G  I     + VF  F      + AH G   G GLGLSI    + L  G 
Sbjct: 847 TRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYG---GSGLGLSITRQLVELMKGD 903

Query: 772 VSISSSDEGVTTINCRIP 789
           +S+ S     T +   +P
Sbjct: 904 ISLHSEPGKGTLVTIDLP 921


>gi|304407983|ref|ZP_07389633.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343002|gb|EFM08846.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
          Length = 1091

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 14/235 (5%)

Query: 562 LRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           L++AD+    K+ F+  VS+E+R+PL  IIG T L++ ++L      Q  Y   I +SS 
Sbjct: 433 LKQADQENRAKSRFLARVSHEIRTPLNGIIGMTQLMQHTEL---TDTQQDYAHKILSSSH 489

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL ++ DILDL+ ++AG + +      +++LL E+  ++        I + + S+  L 
Sbjct: 490 LLLGIITDILDLSKIEAGKLNMEQLEFQIDELLYELTSTVGVLKGIKQIEVILESEAGLP 549

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG--DFIFSVKNNGSSIPED 733
              + D  RL QI   + SNA+ F+  G  ++   +    NG     F+V++ G  + ED
Sbjct: 550 DKVIGDPLRLKQILMNLCSNAIKFTEHGHVLVRVERVIEMNGIVRLRFTVRDTGIGMTED 609

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
               ++  F     A   +  G GLGL IV+  + L GG + + SS  G+ +  C
Sbjct: 610 QIDMLYEPFWQAEYASASKLAGTGLGLPIVKELVQLLGGELQVESSP-GIGSCFC 663


>gi|296107761|ref|YP_003619462.1| hypothetical protein lpa_03125 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649663|gb|ADG25510.1| hypothetical protein lpa_03125 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 676

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 148/276 (53%), Gaps = 23/276 (8%)

Query: 529 SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           S +P+ N + +++  V +T  V     LT+  EA   A++ K +F+ ++S+++R+PLT +
Sbjct: 243 SKVPITNLSGSIVGLVGITVDVTE---LTKAKEAAEAANQAKTAFIANMSHDIRTPLTGV 299

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG ++LL+ +     + +Q +    +  S   LLN++NDILD   V AG M      I  
Sbjct: 300 IGMSELLENT---VKDPEQKEEAHMLHDSGEELLNMLNDILD--DVHAGFMDKEDIRIET 354

Query: 648 NDLLNEVKQSIATKMHENNIRIK----VISDGK-LGSFV-ADRQRLLQIFSKILSNAMDF 701
            DL   ++  +  K+      +K    ++  GK +  ++ +DR+++ ++   +L NA+ F
Sbjct: 355 FDLYQCIEDLV--KLERPTTVMKHLELIVHIGKSVPRYIQSDRKKIHRVLLNLLGNAIKF 412

Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           + KG   I    L+ +  N    F V + G  IP  + + VF RF  +S +++G  +G G
Sbjct: 413 TPKGQITIQVACLEVSGKNIHLQFKVSDTGIGIPTSLQEKVFERFFRISPSYKGIYKGHG 472

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL I +S++NL GGH+++ S +   TT    IP +
Sbjct: 473 LGLHIAQSYVNLLGGHIALISEEGKGTTFYFDIPCQ 508


>gi|226310516|ref|YP_002770410.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093464|dbj|BAH41906.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 478

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 125/257 (48%), Gaps = 15/257 (5%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           AQT+ T     + V  ER   E         +++N F+ +VS+ELR+PLT I GF + L+
Sbjct: 228 AQTINTMAQKLEKVEQERHHLE---------QVRNDFLANVSHELRTPLTAIQGFLEALQ 278

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +    ++Q  Y   +  + T+ +N LV+D++DL  ++   + L    + + D++N V
Sbjct: 279 DGLVEEEEARQKYYA--VMYTETMQVNRLVDDLMDLMKLENNEVNLVKFPVDVADVMNRV 336

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             S   +  E  + + V  + +L    AD+ R+ QI   ++ NA+ F+S G  + ++A+ 
Sbjct: 337 AFSFHQEAEEKGLHMGVEVEDELPRIYADKDRIAQILKNLVKNALKFTSAGE-IRMRASL 395

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           D       V + G  I  D    ++ RF  V        +G GLGL+IV+  + LH G  
Sbjct: 396 DGEYVQIQVIDTGMGIAADDLDRIWERFFKVDRGRSKNNKGTGLGLAIVKELVELHDGKC 455

Query: 773 SISSSDEGVTTINCRIP 789
            + SS    +T    +P
Sbjct: 456 RVESSPGKGSTFTIWLP 472


>gi|221633575|ref|YP_002522801.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
 gi|221157115|gb|ACM06242.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
          Length = 421

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 152/359 (42%), Gaps = 42/359 (11%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA---ATCSRYY--NESD 495
           DHLS+GV +  PDG++   N A R L         PG     +    A   R Y  NE  
Sbjct: 91  DHLSDGVVLVDPDGQVVSLNRAARELL--------PGGRSEALGRPYAEVLRDYELNELV 142

Query: 496 GWDLFAAIITS-----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
              L  A  T+         R+S+Q  +     SVL+ +  PL      L   ++T+   
Sbjct: 143 ARALAGAAPTTGRFVELGRPRRSIQAQV-----SVLQGADRPL----VTLVLRDITE--- 190

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
                      LR+ + I+  FV +VS++LR+PL  +    + L    L    +    ++
Sbjct: 191 -----------LRRTETIRRDFVANVSHDLRTPLAALQALVETLLDGALAD-PAVAEDFL 238

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+     +  LVN +L+L   ++G ++L      L +L     +    +     I + 
Sbjct: 239 RRIAVEVEHMTRLVNQLLELTKAESGQLQLARVPTDLAELARATLRRFEPRAASKGIALT 298

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V    +L     D +R+ Q+ + +L NA+ F+  G  + ++ A  +G+ I  V++ G  I
Sbjct: 299 VQVAPELPPVACDPERIGQVLANLLDNALKFTPAGGQITVEIAAASGEAIVRVRDTGPGI 358

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           P D    VF RF          G GLGL+IV+  + LHGG V   S   G   +   +P
Sbjct: 359 PADELDRVFERFFKGDRARSGGGSGLGLAIVKHLVQLHGGRVWAESPPGGGAIVGFALP 417


>gi|114763421|ref|ZP_01442828.1| two-component hybrid sensor and regulator [Pelagibaca bermudensis
           HTCC2601]
 gi|114543959|gb|EAU46970.1| two-component hybrid sensor and regulator [Roseovarius sp.
           HTCC2601]
          Length = 654

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 2/210 (0%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           + +FV+ V++ELR+PLT++ G   LL +     L  K  Q ++    +++ L+ LVNDIL
Sbjct: 413 RTAFVETVNHELRTPLTSLNGAMRLLSSRFGNELPPKARQLLDLAERNASRLMMLVNDIL 472

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            L  +D G + +  +T+  ND+  E   ++        + + +       S   D QR+ 
Sbjct: 473 TLQAMDQGRLNVTLATVRANDIPREAVTNMQGYADGFGVGLLLELQNTGASVQVDPQRMQ 532

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   ++SNA+ +S +G +V + +A    + +  V+++G  IP     ++F RF   AH 
Sbjct: 533 QVMDNLISNAVKYSPQGESVEISSALTETEVVIRVRDHGPGIPAAAQGAIFERFAKPAHG 592

Query: 749 G--QRRGVGLGLSIVESFINLHGGHVSISS 776
              Q  G GLGL+I    +   GG +S+ S
Sbjct: 593 PDTQASGTGLGLAISRELVERMGGTLSLES 622


>gi|86157556|ref|YP_464341.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774067|gb|ABC80904.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 748

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 117/237 (49%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +TE   A+R  DE+    +Q VS++LR+PL+ + +G   L +        ++  +    +
Sbjct: 503 VTELRRAVRNRDEV----LQVVSHDLRTPLSAVTLGAAALTRLRDGPDAAAQARRAAGRL 558

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +A+   +  L++D+LDL T++ G + +        DLL E    +        + + + +
Sbjct: 559 AAAGRRMNRLIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSA 618

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L +   DR R+LQ+   + SNA+  + +G+  +   A+ +G  +F +++ G  IP+ 
Sbjct: 619 APGLPAVACDRDRVLQVLGNVASNAVKATEEGAVCLAAEAQGDGAVVFRIRDTGPGIPDA 678

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               VF+RF       + RG GLGL+I    +  HGG +   S+    TT++  +P+
Sbjct: 679 DLPHVFDRF-QRGSAARWRGSGLGLAIARGLVEAHGGRIWAESAPGAGTTVSFTLPA 734


>gi|183220127|ref|YP_001838123.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910247|ref|YP_001961802.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774923|gb|ABZ93224.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778549|gb|ABZ96847.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 1164

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 10/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E  L    E    A   K++F+ ++S+E+R+PL  +IGF DLL  +   
Sbjct: 628 THTDITHRKILENDLIIAREKAENASIAKSNFLANMSHEIRTPLNGVIGFADLLMRT--- 684

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN  Q +Y+E +  S+  LL+L+NDILD + +++G M+L    + + DLL+++ + +  
Sbjct: 685 DLNQVQRKYMETVHLSALSLLDLINDILDFSKIESGKMELYKERVNIFDLLHQIAEIVKH 744

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RD 715
           K +E  + + + IS     +   D  RL QI   ++ NA+ F+ KG   I   A    ++
Sbjct: 745 KAYEKGLELILNISPKVPRNVFVDSLRLRQILLNLIGNALKFTLKGEIQIKLTATPVNQN 804

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +F+F V + G  I ++    +F  F        R+  G GLGLSI    + L    + 
Sbjct: 805 EFEFLFEVIDTGIGINKENQNKIFEVFAQADSSTTRQFGGTGLGLSISSKLLQLFDSKIE 864

Query: 774 ISS 776
           + S
Sbjct: 865 LES 867


>gi|162456089|ref|YP_001618456.1| hypothetical protein sce7807 [Sorangium cellulosum 'So ce 56']
 gi|161166671|emb|CAN97976.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1444

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 16/244 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            RA  +L EK   L +  + K+ F+ ++S+ELR+PL +++    +L  ++  +L  KQ +Y
Sbjct: 1031 RASASLEEKARELSRTSKYKSEFLANMSHELRTPLNSLLILARILADNEEHTLTPKQVEY 1090

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I+A+   LL L+N+ILDL+ ++AG + +    ++L++L   V++S      +  +  
Sbjct: 1091 AKTIAAAGQDLLQLINEILDLSKIEAGKIDVKTQRVLLSELAEYVERSFRQIAEQKELEF 1150

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF-------- 719
             V ++ G     + D QRL QI   +LSNA  F+S G   + ++ A     F        
Sbjct: 1151 WVRVATGVPAGIMTDLQRLQQILKNLLSNAFKFTSSGRISLEIEVASKGLTFKRETLIKA 1210

Query: 720  ----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F+V + G  IP +    +F+ F        R   G GLGL+I     +L GG +S
Sbjct: 1211 KTVLAFAVTDTGIGIPTEKQTLIFDAFQQADASTSRTYGGTGLGLTISRELASLLGGEIS 1270

Query: 774  ISSS 777
            ++S+
Sbjct: 1271 LNST 1274


>gi|261213592|ref|ZP_05927873.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 3 str. Tulya]
 gi|260915199|gb|EEX82060.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 3 str. Tulya]
          Length = 532

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 11/230 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS--LNSKQSQYVEYISASSTILLNLVND 626
           K   +  VS+ELR+PL +IIGF+D+L T ++GS   + +Q +Y   I  S   LL LVN 
Sbjct: 252 KGRLLATVSHELRTPLNSIIGFSDML-THEIGSKLASDRQREYAGLIHQSGHYLLELVNA 310

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD + ++ G   +   + V  D +      +  +  +  +         +G  VADR+ 
Sbjct: 311 VLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRA 370

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCKSVFNR 741
           + QI   + +NA+ F+  G  V + AAR   D      FSV + G  I PED+ + +   
Sbjct: 371 VQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDL-QRIGTP 429

Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FV   N++   + G GLGLS+V+  +  H G + + S     T +  R+P
Sbjct: 430 FVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLP 479


>gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1424

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 843  QARQELETRAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 902

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M +    + L  LL  V+ +      + ++  
Sbjct: 903  AGIIHSAGSDLLQLINDILDLSKVEAGKMDVAPERVPLRQLLEYVEATFRPMTTQKSLEF 962

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD---------NGD 718
             V  + G     + D  RL QI   +LSNA+ F+ +G   + ++ A D          G 
Sbjct: 963  TVATAPGTPADLLTDDSRLRQILRNLLSNAVKFTEQGGVELRIEPAADREVPSGVHRGGP 1022

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + F VK+ G  IP+   +++F  F        R+  G GLGLSI     +L GG V++ 
Sbjct: 1023 IVAFRVKDTGIGIPQQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 1082

Query: 776  SSDEGVTTINCRIP 789
            S+    +T    +P
Sbjct: 1083 STPGQGSTFTLYLP 1096


>gi|121997915|ref|YP_001002702.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121589320|gb|ABM61900.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 502

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 131/250 (52%), Gaps = 15/250 (6%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +++ D    E  L E   A  + D  K+ F+  +S+ELR+PL  I+GF  L+   +  
Sbjct: 100 ALLDIDDYKAREAELAEARVAAERTDRAKSEFLSAMSHELRTPLNAIVGFAQLIYADE-- 157

Query: 601 SLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            L+++ +++Y+ +I ++   L +LV DILDLA ++AG   L   T+ + DLL +  + + 
Sbjct: 158 ELDTRTRNEYLRHILSAGWHLRDLVGDILDLARIEAGRASLAPETVRIPDLLQDCLRLVR 217

Query: 660 TKMHENNIRIKV-ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-N 716
            +  E ++ +++   +  +G  V ADR RL Q+   +L+NA+ ++ +G +V+L   RD  
Sbjct: 218 DQAAEYSVSLRLEEPEHPVGVCVWADRLRLKQVVLNLLTNAIKYNREGGSVVLSYGRDAA 277

Query: 717 GDFIFSVKNNGSSIPEDMCKS----VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           G     V ++G  I +  C++     F+R       G   GVG+GL +      L GG +
Sbjct: 278 GQVWVDVVDSGLGI-DPQCRAGLFETFDRL--GRETGSIEGVGIGLPLALRLSRLMGGEL 334

Query: 773 SI--SSSDEG 780
            +  S  D+G
Sbjct: 335 QLVDSVPDQG 344


>gi|90409825|ref|ZP_01217842.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum 3TCK]
 gi|90329178|gb|EAS45435.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum 3TCK]
          Length = 940

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 126/240 (52%), Gaps = 17/240 (7%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D+ R  +AL EK EA   AD  K++F+ ++S+E+R+P+  ++G + LL  +    L  +Q
Sbjct: 384 DTQRLNQAL-EKAEA---ADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKT---DLTQEQ 436

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++  +  S   +++++NDILD + ++ G  KLN +   + DL+  ++ +  +   E  
Sbjct: 437 RHHLLTLLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKG 496

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------F 719
           +   +  +    S F AD+ R+ QI   +++NA+ F+ KG  V +   +D  D       
Sbjct: 497 LGFSIQCNFDYNSWFFADKSRIRQILFNVINNAIKFTDKGE-VSVSLNQDQCDDPRERRL 555

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I + ++ G  I ED  + +F+ F        RR  G GLGLSIV   +NL  G + + S+
Sbjct: 556 IITTQDTGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVSQLVNLMNGDIQLEST 615


>gi|327542128|gb|EGF28621.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 690

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L ++   L + DE KN F+  +++ELR+PLT I    DLL+     + +  Q   +  
Sbjct: 306 RELQKEKALLSEMDERKNRFLALLAHELRNPLTPIGNAVDLLR---FAAKDPNQVNEIST 362

Query: 613 ISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +  S    L+ L++D++D++ +  G + L   T+ ++D++    +++ +  +E    +  
Sbjct: 363 VLESQVHQLVRLIDDLMDVSRITRGRIDLQRETVSIHDIVANSCRAVESLCNEMGHELIR 422

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            +D K    V  D  RL Q+ + +L+NA  ++     + +   + +G    +VK+NG  I
Sbjct: 423 RTDPKQSLHVHGDYVRLTQVVTNLLNNACKYTPPSGRIEISCGQVDGQVEIAVKDNGVGI 482

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  K +F  F  V    +  R G+G+GL++V+  + LHGG VS+  SD+  T    RI
Sbjct: 483 PPEHRKGIFEMFTQVDETLKDSRGGLGIGLTLVKQLVELHGGKVSLVDSDDTSTGSEFRI 542


>gi|320160738|ref|YP_004173962.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319994591|dbj|BAJ63362.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 521

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 154/346 (44%), Gaps = 29/346 (8%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH---IR--NIAATCSRYYNES 494
           +D L++G+ +  PD  I+  NPA   +       +    H   IR        +    ES
Sbjct: 180 LDSLADGILILRPDHSIERCNPAISRMLNLPLENIRGRRHDEIIRWSKPPQGITLEQAES 239

Query: 495 DGWDL--FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           DGW L   A +    D  R  L         + L   I   P   +    VN+  +VR  
Sbjct: 240 DGWPLTPHAYLYVEGDLSRSGL---------APLPVGITYAPLISSENKLVNIIATVRD- 289

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             +T      R+A+E+K++F+  VS+EL++P+  I G+   L+              ++ 
Sbjct: 290 --ITR----FRQAEELKSTFISIVSHELKTPVALIKGYVSTLRREDASWDPEIIQDSLKV 343

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L  ++ ++LD + + AG + L  S + L +L   V Q + T+   + I +   
Sbjct: 344 IEEEADRLAVMIENLLDASRLQAGGLTLKKSDLSLPELARRVAQRMQTQTSSHRIVVDFP 403

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731
            D  +   +AD  RL Q+ + ++ NA+ ++  G   +   AR N   I  V + G  I P
Sbjct: 404 DDFPI--VLADEGRLQQVLTNLIGNAIKYAPGGEIRVHGEARGN-QIIVCVSDQGPGINP 460

Query: 732 EDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
           ED+   VF+RF  N    ++ +G GLGL +  + I  HGG + + S
Sbjct: 461 EDV-PHVFDRFYRNPEAAKKTKGAGLGLYLSRAIIEAHGGRIWVDS 505


>gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 878

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 16/243 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT   +A  +A + +  F+  +S+E+R+PL  +IG   LL+ S   SL  ++ Q  + + 
Sbjct: 456 LTVAKDAAVEAYQARQEFLATMSHEIRTPLNGLIGMATLLRDSL--SLPPEEKQMAKSVK 513

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +   ILL LVNDILDL+ ++A  M +      + D+ +E+ Q +A +  E+N+R++  ++
Sbjct: 514 SCGDILLRLVNDILDLSKLEANQMVVENIGFRVKDMAHEICQVLAAQAKEHNLRLQYEVA 573

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI----------FS 722
           D        D  R+LQ+   +  NA+ F+ +G   +I+    D+ + I          F 
Sbjct: 574 DNVPPVLFGDTGRILQVLMNLTGNAIKFTPEGVVKIIIDLIEDDAEKITFKSDEYNVCFR 633

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  +P +  + +F  FV       R+  G GLGL +    + L  G + + ++  G
Sbjct: 634 VQDTGIGVPPESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVKLMRGEIGVYNNQHG 693

Query: 781 VTT 783
            +T
Sbjct: 694 GST 696


>gi|228998513|ref|ZP_04158101.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17]
 gi|229005989|ref|ZP_04163679.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4]
 gi|228755257|gb|EEM04612.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4]
 gi|228761238|gb|EEM10196.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17]
          Length = 449

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 12/236 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR +++++  FV +VS+E +SPL++I GF+  L+T+ L    S+Q+ Y+E I + S  + 
Sbjct: 211 LRNSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDL--TKSEQTHYLEIIESESRRMS 268

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS---DGKLG 678
           +L   +L LA++D   + L   +    DL  ++K +I   M E   R K ++   D    
Sbjct: 269 SLCKQLLILASLDKEDLTLRKQSF---DLGKQIKDTIF--MLEWEWRTKELAVEMDVPNM 323

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D   L Q++  + +N++ F+  G T+  +A     ++  S+ + G  IPE+  K +
Sbjct: 324 QIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 383

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF  V  A      G GLGLSIV+  I+LH G +++ S     T  +  +P ++
Sbjct: 384 FDRFHKVDTARNRNVNGSGLGLSIVKKVIDLHSGAITVDSELGKGTIFSIYLPKQQ 439


>gi|229017878|ref|ZP_04174761.1| Sensor histidine kinase [Bacillus cereus AH1273]
 gi|228743469|gb|EEL93586.1| Sensor histidine kinase [Bacillus cereus AH1273]
          Length = 311

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 81  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 139

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + LN   I + +LL ++      ++ E NI  +     +    +A
Sbjct: 140 LMNDLFEYTRVQNKELSLNSVPIDIVELLGQLTVQFRIQLQEANIECRPSFPSQKLMVLA 199

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G+ + + A  DN      + N G +IP      VF RF
Sbjct: 200 DGDKLVRVFENLIINAITYGNDGNHIDITAYEDNNTIAIDITNYGQAIPSTDLPHVFERF 259

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 260 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 310


>gi|317499092|ref|ZP_07957371.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893612|gb|EFV15815.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 985

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 148/268 (55%), Gaps = 19/268 (7%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N + +L   + T   +  +AL++   A   A++ K++F+ ++S+++R+P+  IIGFT L 
Sbjct: 440 NKKYILVMSDRTADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTL- 498

Query: 595 KTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
               + ++++K+    Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+
Sbjct: 499 ---AVSNIDNKKMVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLH 555

Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           ++K  I+ ++H   + + + + D        D+ RL QI   +LSNA+ F+  G  + ++
Sbjct: 556 DLKTIISGQIHAKQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVR 615

Query: 712 ------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIV 761
                   R+   +   VK+NG  + ED  + +F+ F     S   R Q  G GLG++I 
Sbjct: 616 LKQYPGTQRERQLYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQ--GTGLGMAIT 673

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ +++ GG++ I +     T    R+P
Sbjct: 674 KNIVDMMGGNIEIQTEQGKGTEFIVRLP 701


>gi|255971508|ref|ZP_05422094.1| sensor histidine kinase [Enterococcus faecalis T1]
 gi|256761813|ref|ZP_05502393.1| sensor histidine kinase [Enterococcus faecalis T3]
 gi|256854940|ref|ZP_05560301.1| sensor histidine kinase [Enterococcus faecalis T8]
 gi|255962526|gb|EET95002.1| sensor histidine kinase [Enterococcus faecalis T1]
 gi|256683064|gb|EEU22759.1| sensor histidine kinase [Enterococcus faecalis T3]
 gi|256709453|gb|EEU24500.1| sensor histidine kinase [Enterococcus faecalis T8]
          Length = 398

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S     +  +  Y+ A    LL
Sbjct: 162 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 221

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             V+D+ +   V    + ++ +T  +  L+ ++      +  + N++I+V ++       
Sbjct: 222 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 279

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L+++F+ +LSNA+ +   G  ++++  +   + I +V+N+G +IP+     +F+R
Sbjct: 280 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 339

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGL+I +S + LHGG++  + SD+  T+    +P
Sbjct: 340 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 388


>gi|54295027|ref|YP_127442.1| hypothetical protein lpl2107 [Legionella pneumophila str. Lens]
 gi|53754859|emb|CAH16347.1| hypothetical protein lpl2107 [Legionella pneumophila str. Lens]
          Length = 676

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 148/276 (53%), Gaps = 23/276 (8%)

Query: 529 SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           S +P+ N + +++  V +T  V     LT+  EA   A++ K +F+ ++S+++R+PLT +
Sbjct: 243 SKVPITNLSGSIVGLVGITVDVTE---LTKAKEAAEAANQAKTAFIANMSHDIRTPLTGV 299

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG ++LL+ +     + +Q +    +  S   LLN++NDILD   V AG M      I  
Sbjct: 300 IGMSELLENT---VKDPEQKEEAHMLHDSGEELLNMLNDILD--DVHAGFMDKEDIRIET 354

Query: 648 NDLLNEVKQSIATKMHENNIRIK----VISDGK-LGSFV-ADRQRLLQIFSKILSNAMDF 701
            DL   ++  +  K+      +K    ++  GK +  ++ +DR+++ ++   +L NA+ F
Sbjct: 355 FDLYQCIEDLV--KLERPTTVMKHLELIVHIGKSVPRYIQSDRKKIHRVLLNLLGNAIKF 412

Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           + KG   I    L+ +  N    F V + G  IP  + + VF RF  +S +++G  +G G
Sbjct: 413 TPKGQITIQVACLEVSGKNIHLQFKVSDTGIGIPTSLQEKVFERFFRISPSYKGIYKGHG 472

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL I +S++NL GGH+++ S +   TT    IP +
Sbjct: 473 LGLHIAQSYVNLLGGHIALISEEGKGTTFYFDIPCQ 508


>gi|297537736|ref|YP_003673505.1| multi-sensor signal transduction histidine kinase [Methylotenera
           sp. 301]
 gi|297257083|gb|ADI28928.1| multi-sensor signal transduction histidine kinase [Methylotenera
           sp. 301]
          Length = 975

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     + +L +  E+   AD IK+ FV  +S+ELR+PL +IIGF  ++     G LN
Sbjct: 709 DITQKKVLQASLIKARESAESADRIKSMFVASMSHELRTPLNSIIGFLGVVLQGMSGDLN 768

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIAT 660
           +KQ   +     S+  LL+L++D++D++ ++AG ++++  +  L  + NEV      IA 
Sbjct: 769 TKQKDQLGRAYHSAKHLLSLISDVIDISKIEAGFLEIHTESFALKPMFNEVVNVIHHIAD 828

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             H  N++I    D  L +   DR+RL Q    ++SNA+ ++  GS V ++A   N + I
Sbjct: 829 GKHL-NLQIDCSEDIILET---DRKRLYQAILNVVSNAVKYTEAGS-VTVEAKIINEELI 883

Query: 721 FSVKNNGSSIPEDMCKSVFNRF-VSNAH-RGQRRGVGLGLSIVESFI-NLHGGHVSISSS 777
            + ++ G  I     + +F  F  + +H + +  G GLGL +    +  L GG + + S 
Sbjct: 884 ITTQDTGIGISPSGLEQLFKPFERAESHLKIKTLGTGLGLYLTRKILTQLLGGSIEVESQ 943

Query: 778 DEGVTTINCRIPSK 791
               +T   R+P K
Sbjct: 944 VGVGSTFTIRVPVK 957


>gi|258517266|ref|YP_003193488.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780971|gb|ACV64865.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 679

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 126/251 (50%), Gaps = 2/251 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++    E+++    E   KA   K+ F+ ++S+ELR+PL  ++GF+ +L+  K   L+
Sbjct: 422 DISERKEMEKSIIAAKEETEKASMAKSQFLSNMSHELRTPLNAVLGFSQILQMDKSAPLD 481

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + QS+ V+ I  +   LL L+N+ILDLA +++G + +    + +  ++ E    I     
Sbjct: 482 NSQSESVKEIVKAGNHLLMLINEILDLAKIESGKLNILIEPVKILPIIEETVAFIKPLAK 541

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           EN+I I +     +  +V AD  RL Q+   + SNA+ ++     V     + +    F+
Sbjct: 542 ENDIEIAINPRDCMEQYVLADSIRLRQVLLNLFSNAVKYNYNSGKVSFYCEKIDKFIRFN 601

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + ++G  IP     ++F+ F           G G+GL+  +  + L GG++++ S +   
Sbjct: 602 ILDSGLGIPSAQLPAIFDPFYRLPITANNVEGTGIGLAAAKQLVELMGGNINVKSQEGQG 661

Query: 782 TTINCRIPSKE 792
           +     IP  E
Sbjct: 662 SHFWFDIPCAE 672


>gi|228934496|ref|ZP_04097331.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825133|gb|EEM70930.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 448

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNQGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 964

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 131/252 (51%), Gaps = 12/252 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-L 594
           A  +L F  +T   + +  L    E   +A   K++F+ ++S+E+R+P+ ++IGF+ L L
Sbjct: 274 ALMVLGFAEITTLKKVQADLLLAKEQAEEATRAKSAFLANMSHEIRTPMNSVIGFSHLAL 333

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           KT+    L+ +QS Y+  I  S+  LL L+ DILD + ++AG + +      L+++L+ V
Sbjct: 334 KTN----LDKQQSDYLNKILFSARSLLGLIGDILDFSKIEAGKLTVESLPFTLDEMLDSV 389

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               A +  E  + +       L  + + D  RL Q+ + ++SNA+ F+++G   +L   
Sbjct: 390 AALNANRAEEKGLDLIFSHSSNLPQALIGDPLRLGQVLTNLVSNAVKFTTEGHVQVLVEP 449

Query: 714 RDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
               +      FSV ++G  +  +    +F  F  V  +H  +  G GLGL+I  + + +
Sbjct: 450 LHQQEQELLLKFSVIDSGMGMSSEQVSLLFTPFTQVDVSHTRRFGGTGLGLAICRNLVEM 509

Query: 768 HGGHVSISSSDE 779
            GG +S+ S ++
Sbjct: 510 MGGSISVRSQEQ 521


>gi|75812473|ref|YP_320092.1| response regulator receiver hybrid histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75705229|gb|ABA24903.1| response regulator receiver hybrid histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 519

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 7/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+A T  N     A+ +K+ F+  +S+ELR+PL  I+G+  +L      S  +K++  +E
Sbjct: 121 EQAETRANA--EAANRLKDEFLVTLSHELRTPLNAILGWAQILLKQTPNSSTTKRA--LE 176

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++     +V DILD++ +  G   L  + + L  ++N V  S+   +    I ++ 
Sbjct: 177 TIVRNAKTQARIVEDILDISGIITGKFSLQVAPVDLVAIINTVIASVNPAIATKAIHLEA 236

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                 G  + D  RL QIF  +L NA+ F+ +   ++L+  + N D + +VK+ G  I 
Sbjct: 237 KLAPLDGQVLGDETRLQQIFGNLLLNAVKFTPEHGYILLQVKQVNIDAVITVKDTGIGIN 296

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
            +    VF+RF        R  RG+GLGL+I      LHGG +  +S  EG   T   ++
Sbjct: 297 AEFLPFVFDRFSQADSSTTRSYRGLGLGLAIARQLTELHGGTIEATSLGEGYGATFTVKL 356

Query: 789 P 789
           P
Sbjct: 357 P 357


>gi|24215121|ref|NP_712602.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24196185|gb|AAN49620.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 731

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 8/239 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           + V  S R E  L  + E   KA++ K+ F+ ++S+ELR+PL +IIGF+ L++       
Sbjct: 318 LEVLVSQRTEE-LNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQ---FPEG 373

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++++Y++ I  S   LLN++NDILDL+ ++A  + LN S   L +L++   + I  + 
Sbjct: 374 MERENRYLDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEA 433

Query: 663 HENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
               + +      K  +F   AD +R+ Q+   +L NA+ F+     +++   +   +F 
Sbjct: 434 ITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQ 493

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +V+++G  IP +    +F  F  V    R    G GLGL IV+  +  H G + + S+
Sbjct: 494 LAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESA 552


>gi|301054746|ref|YP_003792957.1| histidine kinase [Bacillus anthracis CI]
 gi|300376915|gb|ADK05819.1| histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 346 IQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|302846523|ref|XP_002954798.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
 gi|300259981|gb|EFJ44204.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
          Length = 1238

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 19/245 (7%)

Query: 551 AERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           A R + E N     + L+   E K  F+  +S+ELR+PL  IIG +D L     G +N +
Sbjct: 309 AMRIVEEGNRIQVIQELKDLVEQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQ 368

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKM 662
             + +  I  S   LLNL+NDILD A++  G + + +  + L  ++++V    Q +A + 
Sbjct: 369 ALKTITTIKTSGARLLNLINDILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKR- 427

Query: 663 HENNIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                 +K+++D +  +   + D  R++Q+F  ++ N+  F+  G   I  + +D+ +  
Sbjct: 428 -----GVKLVNDLRENVPFVLGDTGRIIQVFHNLIGNSCKFTHNGFISIAASVKDD-EVE 481

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  IPED    +F  F        R+  G GLGL++V+  +  HGG +S+ S +
Sbjct: 482 VAVSDTGIGIPEDKFDQIFLAFEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSKE 541

Query: 779 EGVTT 783
              TT
Sbjct: 542 GQGTT 546


>gi|281206650|gb|EFA80836.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1688

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 137/267 (51%), Gaps = 19/267 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +VT     +R + EK EA  +A++ K++FV  VS+E+R+PL+ +IG +DLL  +   
Sbjct: 552 TLRDVTSRKDMQRLILEK-EAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLET--- 607

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q  YV+ I  SS  LL ++NDILD + +++  +K+      + +    V   ++ 
Sbjct: 608 VLNEEQRDYVQTIQKSSQALLTIINDILDYSKLESKQLKMETIPFSIIETGQAVIYMLSV 667

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------L 710
             +++   +  +        + D  R+ Q+   ++SNA+ F+S G  +           L
Sbjct: 668 ATNDDVDLLFRVPPNVPDVVIGDAMRVRQVLLNLVSNAIKFTSHGHVLCDISVVESLNPL 727

Query: 711 KAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI- 765
            ++R +       +V++ G  IP+ + +++F  F    +   R+  G GLGLSI +  I 
Sbjct: 728 HSSRSDNTIHLCITVEDTGIGIPQSLFEAIFEPFSQADNSTTRKYGGTGLGLSITKRLIE 787

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            + GG + +SS+    +T  C IP K+
Sbjct: 788 EVMGGTIHVSSTVGLGSTFKCTIPFKK 814


>gi|220916345|ref|YP_002491649.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954199|gb|ACL64583.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 601

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 116/235 (49%), Gaps = 10/235 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E   A+R  D++    +  VS++L++PL  I   + LL  S       +  ++ E I  S
Sbjct: 377 EAQRAIRARDDV----LAIVSHDLKNPLEAIYLSSALLLRS---GAAPRLRRHAETIQRS 429

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  +  L+ ++LDL+++DAG + +      L+ ++ E    ++    E  I +   + G 
Sbjct: 430 AARMDRLIRELLDLSSIDAGRLVVEPRPEPLDAVVEEALAGLSPLALERGIALGADTGGA 489

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 DR+R+LQ+ S ++ NA+ F+ +G  V ++A     +    V+++G  I     +
Sbjct: 490 REPVPCDRERILQVLSNLVGNALQFTPRGGHVTVRATLAPTEARVEVRDDGPGIAPAQLR 549

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            VF+R+  +   G RRG GLGLSI +  +  HGG + + S     +T    +P +
Sbjct: 550 RVFDRYWKS---GSRRGSGLGLSIAKGLVEAHGGRIEVESRLGAGSTFRFTLPRR 601


>gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1225

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 23/249 (9%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA   A+  K+ F+  +S+ELR+PL  I+GF  L+      S+  +  QY+E IS +   
Sbjct: 736 EAADAANLAKSEFLASMSHELRTPLNAILGFAQLMNYD--SSIKVEHHQYLEIISRAGEH 793

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLNL+NDIL+++ ++AG + L      L  LL  +++ +  K     + +    D  L  
Sbjct: 794 LLNLINDILEMSKIEAGRVTLTEDDFDLLHLLENLEKMLCLKAQSKGLLLTFELDETLPQ 853

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----------------FS 722
           +V  D ++L Q+   +L NA  F+  G  V L++ R N   +                F 
Sbjct: 854 WVRGDEKKLRQVLINLLGNATKFTESG-CVTLRSFRVNQAKVRETENSLIKNDALRIRFE 912

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I E+  K +F  F S    G +   G GLGLSI + F+ L GG +++ S    
Sbjct: 913 VADTGLGIAENELKRLFQAF-SQTTTGLKSGEGTGLGLSISQQFVQLMGGEITVKSQVNV 971

Query: 781 VTTINCRIP 789
            +T    IP
Sbjct: 972 GSTFAFEIP 980


>gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
 gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
          Length = 576

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 139/275 (50%), Gaps = 26/275 (9%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I +   + +   V V  +      L    E    A++ K+ F+  +S+E+R+PL
Sbjct: 176 LIERAVIDIETKEKLQRIVEVRTT-----QLARAREEAELANQSKSEFLAMMSHEIRTPL 230

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+L+ S   +L+ +Q   +  +  S+ +LL +++DILDL+ +++G  +LN   
Sbjct: 231 NSVLGMLDILRQS---TLSDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQW 287

Query: 645 IVLND----LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           I LND    ++++ KQ   TK    N   ++ SD +   +  D  RL QI   ++ NA+ 
Sbjct: 288 IHLNDTVTFVISQQKQVAITKNLSFNFDCQISSDKQ---YWIDSTRLSQILFNLIGNAIK 344

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GV 754
           F+  GS V +  A +N + + S+ + G  I       +F  F    H+G R       G 
Sbjct: 345 FTDSGS-VSVSVAEENDEVVVSISDTGIGISRAKQAHLFTAF----HQGDRSITRRFGGT 399

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I +  + +  G +S+ S +   +    RIP
Sbjct: 400 GLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434


>gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 935

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 130/243 (53%), Gaps = 7/243 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q + T +++T   + E  L    +A + A + K+ F+ ++S+E+R+P+T I+G+ +LL  
Sbjct: 523 QLVGTMLDITRQRKFEMDLKAARDAAQFASQSKSKFLANMSHEIRTPMTAILGYAELLGE 582

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L ++   +++ I  +   LL+++++ILDL+ ++A  +++N+    L  ++ +V+ 
Sbjct: 583 H---DLPAEACDFLKTIRRNGDYLLDIIDEILDLSKIEADKLEMNHELFDLMRVVEDVRS 639

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  +  E +++I+V  DGKL   + +D +RL QI   ++ NA+ F+ +G  V L     
Sbjct: 640 IMDVRASEKDLQIRVCYDGKLPRRIQSDPKRLKQILINLVGNAIKFTRQGH-VDLAVRYV 698

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           +G   F + ++G  + +D    +F  F        R   G GLGL+I      + GG + 
Sbjct: 699 DGHLQFDITDSGIGMSDDQKAKLFQPFSQGDSSVSRDFGGTGLGLAISRRLAKMLGGEIY 758

Query: 774 ISS 776
           + S
Sbjct: 759 VQS 761


>gi|298241884|ref|ZP_06965691.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554938|gb|EFH88802.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 854

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 27/244 (11%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+ELRSPLT +      L+T+ L    +KQ      I AS+ 
Sbjct: 620 NSARKELEQRKDDFISMASHELRSPLTAM-----KLQTTLLHRQLAKQG-----IPASAP 669

Query: 619 ILLN----------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            L +          LV ++LD++ + AG ++    T+ L+ LL E    IA  M + +  
Sbjct: 670 ALSSMETQINKVSRLVEELLDVSKIQAGRLEYRQETVDLDALLWE----IADTMQQTHPS 725

Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +++  G +  S +ADR RL Q+F+ +LSNA+ +S    TV +  +         V ++G
Sbjct: 726 YRILVHGAVRASLMADRDRLGQVFTNLLSNAVKYSPDAQTVEMDLSTSQETVTIRVHDHG 785

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +  + +F+RF       Q+   G+G+GL IV   +  HGG + + S+    +T  
Sbjct: 786 LGIPREQREKIFDRFYRATGPSQKAIPGLGMGLYIVAEIVKHHGGTIMVESTVGKGSTFT 845

Query: 786 CRIP 789
             IP
Sbjct: 846 VTIP 849


>gi|238026723|ref|YP_002910954.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
 gi|237875917|gb|ACR28250.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
          Length = 1248

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++AD  K+ F+  +++ELR+PL  +    +LL  +      + Q++    +   + IL 
Sbjct: 872  LQQADRQKDEFLAMLAHELRNPLAPVRHAIELLAAAP--DDAALQARVTPILMRQTDILG 929

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             LV D+L+++ +  G++ L   T+ L+ L  +   ++   + +    ++VI +  L  FV
Sbjct: 930  RLVEDLLEVSRITRGLITLRRETVSLDSLAAQAADAVRPFIEQRRHALEVIGEAGLPVFV 989

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
             D  RL+Q    +++NA  ++  G  V ++  R +   +  V +NG  IP+++   VFN 
Sbjct: 990  -DPSRLVQCVVNLMNNAAKYTEPGGRVRVETFRRDAWAVLRVADNGRGIPQELLPHVFNL 1048

Query: 742  FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            FV       RR  G+G+GLSIV   +++HGG V + S+  G
Sbjct: 1049 FVQGERTLDRREGGLGIGLSIVARLVDMHGGTVGVESAGAG 1089



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 4/222 (1%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EAL + D  K +F  ++S+E R+PLT ++G  +         +     + +     +
Sbjct: 312 KRAEALAEIDRGKTAFFSNISHEFRTPLTLLLGPLE--DACAHAGVPEPVREQLRIAHGN 369

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LL LVN +LD A ++AG ++  +    L  L  ++     + +    +  +V     
Sbjct: 370 SARLLRLVNALLDFAQIEAGRLRATFRPTDLAALTRDIASRFRSTVERGGLAFEVDCPAL 429

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            G    D     +I S +LSNA  F+  GS  +   A      +F V + G  I     +
Sbjct: 430 PGPVHVDADLWEKIVSNLLSNAFKFTLHGSIRVSLRAGAARTVVFEVADTGVGIAPADRE 489

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            +F RF     +G R   G G+GL++ +  +  HGG + ++S
Sbjct: 490 RLFERFYRVEGQGGRSMEGAGIGLALAKELVAAHGGTIEVAS 531


>gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           10329]
          Length = 576

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 139/275 (50%), Gaps = 26/275 (9%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I +   + +   V V  +      L    E    A++ K+ F+  +S+E+R+PL
Sbjct: 176 LIERAVIDIETKEKLQRIVEVRTT-----QLARAREEAELANQSKSEFLAMMSHEIRTPL 230

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+L+ S   +L+ +Q   +  +  S+ +LL +++DILDL+ +++G  +LN   
Sbjct: 231 NSVLGMLDILRQS---TLSDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQW 287

Query: 645 IVLND----LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           I LND    ++++ KQ   TK    N   ++ SD +   +  D  RL QI   ++ NA+ 
Sbjct: 288 IHLNDTVTFVISQQKQVAITKNLSFNFDCQISSDKQ---YWIDSTRLSQILFNLIGNAIK 344

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GV 754
           F+  GS V +  A +N + + S+ + G  I       +F  F    H+G R       G 
Sbjct: 345 FTDSGS-VSVSVAEENDEVVVSISDTGIGISRAKQAHLFTAF----HQGDRSITRRFGGT 399

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I +  + +  G +S+ S +   +    RIP
Sbjct: 400 GLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434


>gi|323493551|ref|ZP_08098673.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
 gi|323312374|gb|EGA65516.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
          Length = 878

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 7/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L    E    A + K+ F+ ++S+E+R+PL  IIG  ++L  S L   +S Q + + 
Sbjct: 371 ERNLVSAKENAEAASQAKSVFLANMSHEIRTPLNGIIGMAEILSDSHL---SSSQKEILS 427

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  LL L+NDILDL+ +++G + L+  T+ L +++ +    + +K  + ++ +KV
Sbjct: 428 DIDTSSHALLVLINDILDLSKIESGNLILSVHTVCLREMVFDTVNMLTSKALKQDVELKV 487

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             +D    +   D  R  Q+   +LSNA+ F+ +GS V ++   +    +  V ++G  I
Sbjct: 488 DFADNLPDNIEIDDFRFKQVLMNLLSNAVKFTQQGS-VSVELLIEGQQLVCHVADSGVGI 546

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F  F        RR  G GLGL+I    I +  G +S+SS+    +     +
Sbjct: 547 SPEKLTEIFKPFTQEDGSITRRFGGTGLGLAICNQLIEIMQGTISVSSTPGVGSRFTVSV 606

Query: 789 P 789
           P
Sbjct: 607 P 607


>gi|28199692|ref|NP_780006.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa Temecula1]
 gi|28057813|gb|AAO29655.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa Temecula1]
          Length = 499

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 129/240 (53%), Gaps = 19/240 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++ERA   +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +  +   
Sbjct: 234 LKSERA--ARNEAENMA-RLKDEFLSTLSHELRTPLTTILGWSELL----LQRIEEQHPC 286

Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKM 662
           Y  +  I++S+ +   L++D+LDL+++  G M+L    + L + + EV    +Q + +K 
Sbjct: 287 YKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKG 346

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               +R   +    LG    D  RL QIF  +LSNA+ F+     + ++   D   F  S
Sbjct: 347 QRLLLRAPEMPCLVLG----DATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVS 402

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I  +    +F+RF        R   G+GLGL+IV+S + +HGG+V  +S   G
Sbjct: 403 VTDSGDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLG 462


>gi|315143580|gb|EFT87596.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX2141]
 gi|315174226|gb|EFU18243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX1346]
          Length = 393

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S     +  +  Y+ A    LL
Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             V+D+ +   V    + ++ +T  +  L+ ++      +  + N++I+V ++       
Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 274

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L+++F+ +LSNA+ +   G  ++++  +   + I +V+N+G +IP+     +F+R
Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGL+I +S + LHGG++  + SD+  T+    +P
Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383


>gi|310827090|ref|YP_003959447.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612]
 gi|308738824|gb|ADO36484.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612]
          Length = 1426

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 132/261 (50%), Gaps = 14/261 (5%)

Query: 540  LTFVNVTDSVRAER---ALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            L   +VTD + +ER   A  EK  +L  KA++ K+ F+  +S+++R+P+  ++G T L  
Sbjct: 1011 LVRADVTDMLASERRTKAALEKALSLAEKANQAKSDFLSSMSHDIRTPMNAVMGMTTLAA 1070

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 S   +    ++ I  +S  LL+L+NDILD++ ++   + LN+S I ++DLL+++ 
Sbjct: 1071 AHLDDSARVRDC--LDKIVVASRHLLSLINDILDMSKIERSQITLNHSAIAVSDLLSQLN 1128

Query: 656  QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-- 712
              IA +  +N +     ++  +   F  D  R+ QI   +LSNA+ F+ +G  V L+   
Sbjct: 1129 AMIAPQAADNGLSYSARTENIRHPYFYGDLLRINQILINLLSNAIKFTPEGGRVELRVEE 1188

Query: 713  -----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
                 A D   + F V + G  + E     VF  F  + +  +  G GLGLSI +  ++L
Sbjct: 1189 IAPVKAPDAVRYRFIVSDTGVGMSEAFLIHVFEPFTRDRNVTRVEGTGLGLSITKGLVDL 1248

Query: 768  HGGHVSISSSDEGVTTINCRI 788
              G ++  S +   T     +
Sbjct: 1249 MEGEITAESQERAGTVFRVEL 1269


>gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 590

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 158/354 (44%), Gaps = 33/354 (9%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           ++++GV      G +   NPA R + + EE++L      ++ A      +          
Sbjct: 262 NMADGVIALNGRGEVIHINPAARRMLQLEEDQLG-----QDFAEKLREIFK--------- 307

Query: 502 AIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               + +D +K+ Q  LE+L    D  L+    PL     +  ++ +   +  ++ L   
Sbjct: 308 ---INPEDFQKTEQTQLEVLVKVRDGTLKAIFAPLVGDGRVTGYILLLQDITKQQRL--- 361

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                  +E++  FV +VS+ELR+PLT I  + + L    L   +S   Q++  I+  + 
Sbjct: 362 -------EEMRKEFVANVSHELRTPLTTIKSYAETLLDGALDD-SSVARQFLSVINDEAD 413

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  LVND+L+L+ +D      +   I ++ +L  V   +   + +  + ++      L 
Sbjct: 414 RMTRLVNDLLELSRLDNRETNWDKKPIRIDGVLTAVISKMMVSVRKKGLELECDLPEDLP 473

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD  ++ Q+F  ILSNA+ ++ +G  + +KA         S+++ G  IP++    +
Sbjct: 474 KVFADSDKMEQVFQNILSNAIKYTPEGGRIFVKAENLGSQVQVSIRDTGIGIPKEDLPRI 533

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F RF  V      Q  G GLGLSI    +  H G + + S     T +  ++P+
Sbjct: 534 FERFYRVDKTRSRQLGGTGLGLSIAREIVLAHEGEIKVESELGQGTEVIIKLPA 587


>gi|120402928|ref|YP_952757.1| multi-sensor signal transduction histidine kinase [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955746|gb|ABM12751.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 1385

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 118/243 (48%), Gaps = 5/243 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R+ RA   + E L + D +K +F  ++S+E R+PLT I+     L+ ++  S++    +
Sbjct: 330 ARSYRAQQRRAEELAELDRVKTTFFSNISHEFRTPLTLILDPVSELRRAE--SIDEPVRR 387

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ +  +   L  LVN +LD + ++AG  +  Y  + L  L  E+     + +    + 
Sbjct: 388 ELDVVWRNGLRLTKLVNTLLDFSRIEAGRTQARYQPVDLGALTAELASMFRSAVERAGLT 447

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
             +  D        DR    ++   +LSNA+ F+ +G+ V ++  RD    +  V + G+
Sbjct: 448 FDIDCDPLDEVVYVDRDMWEKVIFNLLSNALKFTFEGA-VSVRVRRDGHQAVVVVADTGT 506

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +P D    +F RF  + NA      G G+GL++V+  I LHGG +   S++   T    
Sbjct: 507 GVPADEMPRLFERFHRIENAKARSNEGSGIGLALVKELIGLHGGTIVADSAEGQGTAFTI 566

Query: 787 RIP 789
           R+P
Sbjct: 567 RMP 569


>gi|172058760|ref|YP_001815220.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171991281|gb|ACB62203.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 812

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 6/226 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D IKN  V  +S+ELR+PL++I GFT+L+    L     +Q +Y+  + + +  L  L+N
Sbjct: 584 DRIKNELVSTISHELRTPLSSIYGFTELMIQRDLPP--HRQKKYLAAVHSETERLSLLIN 641

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D LDL  ++A   +  +    L  ++ ++KQ  +     ++IRI   S+  +     D +
Sbjct: 642 DFLDLQRMEANRQEYTFEPFDLLAMMKDLKQLHSLSSSSHDIRI--FSEETVQIINGDSK 699

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           ++ Q+F  +++NA+ +S  G  + ++    N     ++ + G  IP      +F +F  V
Sbjct: 700 KIRQLFGNLVNNAIKYSPDGGPIEIRVTEHNNRVTVALTDYGIGIPSSAMSELFQKFYRV 759

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            N+   Q  G GLGLSI       H G + + S +   +T    +P
Sbjct: 760 DNSDTRQIGGTGLGLSICREIARAHDGEIHVESIEGQGSTFTVDLP 805


>gi|312891850|ref|ZP_07751356.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
 gi|311295684|gb|EFQ72847.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
          Length = 1449

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 11/246 (4%)

Query: 539  MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            M+ F  N+T  ++    L        +A+  K+ F+ ++S+E+R+PL  +IGFTDL+  +
Sbjct: 787  MMMFTQNITSMIKQREELKNAKLHAEQANIAKSEFLANMSHEIRTPLNGVIGFTDLVLKT 846

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            K   LN  Q QY+  ++ S+  LL+++NDILD + ++AG ++L+     L ++  +    
Sbjct: 847  K---LNETQQQYLSIVNQSANALLSIINDILDFSKIEAGKLELDAERCDLYEMSCQATDI 903

Query: 658  IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TVILKA 712
            I  ++    + + +     L  F+ AD  RL QI   +L NA  F+ +G       +L  
Sbjct: 904  ITYQVQTKGLEMLLNISPDLPRFIYADTVRLKQILVNLLGNASKFTDQGEIELKIEVLST 963

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              DN    F V++ G  I  +    +F  F        ++  G GLGL+I    + L G 
Sbjct: 964  TGDNTSMRFGVRDTGIGIKPEKQAKIFEAFSQEDGSTTKKYGGTGLGLTISNKLLGLMGS 1023

Query: 771  HVSISS 776
             + + S
Sbjct: 1024 KLQLES 1029


>gi|308187945|ref|YP_003932076.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
 gi|308058455|gb|ADO10627.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
          Length = 911

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 12/234 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  ++GFT  +LKT     L + Q  Y++ I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQ----LRTTQRDYMQTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +++ND+LD + ++AG + L      L   L+E    +A   HE  + + V+ D  +  + 
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHEKGLELTVVCDSSVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI   ++ NA+ F+ KG   +    R       +    V+++G  I E    
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVGQRVITQSRVELEIQVEDSGIGISEQQQT 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F  F        RR  G GLGL I +  +   GG ++ SS  +  +T   R+
Sbjct: 463 QLFQAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSTFMIRV 516


>gi|332141097|ref|YP_004426835.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551119|gb|AEA97837.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1236

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V   + L +  E  RKA  +K+SF+ ++S+E+R+PL  ++G   LLK      LN K  Q
Sbjct: 493 VSRTKELMKATEEARKASSVKSSFISNISHEMRTPLNGVVGSLSLLKRQ---PLNDKAEQ 549

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  +  S   L  L+ND+LDL+ ++AG + +N+       L+  + +  A K     + 
Sbjct: 550 LVSMMEISCNNLSVLINDVLDLSKIEAGKLDINHQLFEPLTLIESLAKVFAVKAATKGLE 609

Query: 669 IKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSV 723
           + V + G       +DR RL Q+ S +L+NA+ F+ KG   +  A  +N   +    FSV
Sbjct: 610 LIVDTTGLPRVEINSDRHRLNQVLSNLLNNAIKFTEKGHIQLNAALYENDAGLQQLHFSV 669

Query: 724 KNNGSSIPEDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776
            + G  I  +    +F  F  ++A    Q  G GLGLSI +    L GG ++  S
Sbjct: 670 SDTGVGIAPESQPKLFTAFTQADASVATQYGGTGLGLSICKQLTQLLGGDITFKS 724


>gi|162456999|ref|YP_001619366.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161167581|emb|CAN98886.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 947

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 137/270 (50%), Gaps = 32/270 (11%)

Query: 540 LTFVNVTDSVRA--ERA--LTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTD 592
           L+F ++T+  RA  ERA  L ++  A + A+++   K+ F+  VS+ELR+PL +I+G+  
Sbjct: 530 LSFHDITEQKRADAERAQLLDQEQRARQHAEQLNRLKDEFLATVSHELRTPLQSILGWAR 589

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+T ++ + + ++   +  I  ++     L+ D+LD +T+ AG ++L    +       
Sbjct: 590 ILRTGEVDAESLERG--LATIERNAKAQSQLIEDVLDASTILAGKLQLRTDPV------- 640

Query: 653 EVKQSIATKMHENNIRIKVISDG---------KLGSFVADRQRLLQIFSKILSNAMDFSS 703
           +V+Q +AT +  + +R   ++ G          +G F+ D +RL Q+   +L+NA+ F+ 
Sbjct: 641 DVRQVLATAL--DLVRPAALAKGVAVDTSVADDVGIFLGDAERLQQVVWNLLANAVKFTP 698

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSI 760
            G  V   A R        V++NG  IP+     +F RF   A  G  R   G+GLGL+I
Sbjct: 699 SGGQVRALARRVEATLEVEVEDNGEGIPKSFLPFLFERF-RQADGGMTRAHGGLGLGLAI 757

Query: 761 VESFINLHGGHVSISSSDEGV-TTINCRIP 789
           V       GG V   S  EG       R+P
Sbjct: 758 VRHLAEAQGGSVHAESDGEGKGARFRVRLP 787


>gi|124009854|ref|ZP_01694522.1| PAS [Microscilla marina ATCC 23134]
 gi|123984175|gb|EAY24536.1| PAS [Microscilla marina ATCC 23134]
          Length = 1808

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 17/247 (6%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            N+TDS   E  L +  +   KA + K  F+  +S+E+R+P+  +IG T LL         
Sbjct: 1274 NITDSKNFEEELIQAKQDAEKALQAKEQFLSTMSHEIRTPMNAVIGITHLLLEE---DHK 1330

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q + ++ +  S+  LL L+NDILD   ++AG +        L + +N +K +   +  
Sbjct: 1331 PEQLENLKTLKFSAENLLALINDILDYNKIEAGKISFERVDFNLREFINNIKHAFNYQAA 1390

Query: 664  ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------- 715
            E  I ++   +  + +  + D  RL QI + +L NA+ F+ KG  V+    ++       
Sbjct: 1391 EKGIELEFYVERDVPNLLIGDPVRLNQILTNLLGNAIKFTDKGFVVVKVQLQETLPDKQN 1450

Query: 716  ----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                    +FSVK++G  I  D   ++F RF        RR  G GLGLSI +  I   G
Sbjct: 1451 IPHQEVSLLFSVKDSGIGIAPDKQSTIFERFTQADSDTTRRFGGTGLGLSITKYLIEHQG 1510

Query: 770  GHVSISS 776
            G + + S
Sbjct: 1511 GEIGLHS 1517


>gi|300857012|ref|YP_003781996.1| putative two component sensor kinase [Clostridium ljungdahlii DSM
           13528]
 gi|300437127|gb|ADK16894.1| predicted two component sensor kinase [Clostridium ljungdahlii DSM
           13528]
          Length = 363

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 148/292 (50%), Gaps = 7/292 (2%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           +F   +    D  + +   L LL++  +E +I P+     + T    +D  +    L E 
Sbjct: 76  IFIKKMNKITDYIEEISRVLNLLAEGNMEVTI-PIRRKDELGTLA--SDVNKMAYDLNEL 132

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +  R+ +  KN+ + ++S++LR+PLT+I+GF +L+   K  + N K   Y       + 
Sbjct: 133 MKKERQWENQKNNLITNLSHDLRTPLTSILGFLELI--GKGTNNNEKLKHYCNISLEKAK 190

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L + ++ + + A ++   +KLN + I + +L+ +V         +NN+  ++IS  K  
Sbjct: 191 KLKSSIDQLFEFAKINNMDLKLNKTEIGIEELIEQVTMGFIPSFEDNNMEYRIISKSKGL 250

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD   L + F  I+SN++ ++S+G  + +   ++N + I    N G  I ++   ++
Sbjct: 251 KVNADPILLARAFENIISNSVKYASEGKYLDIIIDKENDNAIIKFVNYGEEIKQEDLANL 310

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FN+F        +R G GLGL+IV++ + LH G ++ISSS E  T    ++P
Sbjct: 311 FNKFYRVEKSCDKREGTGLGLAIVKTVMELHSGEINISSSKEK-TQFEFKLP 361


>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
 gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
          Length = 1343

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 14/256 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           FV+VT   R E  L    +   +A + K  F+ ++S+E+R+P+  I+G + L   + L  
Sbjct: 569 FVDVTKQKRLESDLIAAKDQATEASKAKGEFLANMSHEIRTPMNAILGMSHL---ALLTD 625

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN KQ  YV  I  +   LL ++NDILD + ++AG + + +     +++L+ +   I+ K
Sbjct: 626 LNDKQRNYVGNIEKAGKSLLGIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVK 685

Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  + +    D  L    V D  RL QI   +  N++ F+  G  +I  +   D  + 
Sbjct: 686 AKEKELELIFDIDPNLPDDLVGDPLRLGQIIINLTGNSVKFTESGEIIIRARKVTDVNEI 745

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           I   F +++ G  + E+    +F  F        R+  G GLGL+I +SF+ L GG + +
Sbjct: 746 IEIQFDIEDTGIGMNEEQLGRLFQSFSQADGSITRKYGGTGLGLTISKSFVELMGGRIWV 805

Query: 775 SSSD-EGVT---TINC 786
            S   +G T   TI C
Sbjct: 806 ESQPGKGSTFSFTIRC 821


>gi|188583920|ref|YP_001927365.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347418|gb|ACB82830.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 798

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL+ +IG++++L         ++    +  I +++  LL L+ND+L
Sbjct: 283 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESAARHLLGLINDVL 342

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG + L   +  +  L+ +V  +  + + +   R ++  +G LG+   D+ +L 
Sbjct: 343 DISKIEAGRLTLAAESFDVASLIEDVSAATQSLITKKRNRFRLDLEGDLGAMHQDQLKLR 402

Query: 689 QIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
           Q    ++ NA  FS  G  V  + +   ++G+++ F+V + G  + ++    +F RF   
Sbjct: 403 QSLINLIGNAAKFSEDGEIVLSVRRVREEDGEWLSFAVSDTGIGLTQEQIGRLFERFSQA 462

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                R+  G GLGL+I  +FI   GG + + S+     T   R+P+
Sbjct: 463 DESTTRQFGGTGLGLAITRAFIERMGGTIGVESTFGAGATFTIRLPA 509


>gi|111225753|ref|YP_716547.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
 gi|111153285|emb|CAJ65037.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
          Length = 1371

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 125/254 (49%), Gaps = 18/254 (7%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L EK E L  + + K  F+ ++S+ELR+PL +++    LL  +   +L+ KQ  + E I
Sbjct: 809  GLEEKAEQLALSSQYKTEFLANMSHELRTPLNSLLILAKLLADNPDRNLSRKQIDFAETI 868

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             ++ + LL L+NDILDL+ V+AG M ++ +++    L + V         E  +  +V +
Sbjct: 869  HSAGSELLGLINDILDLSKVEAGKMDVDATSVRTAALCDAVAGVFGPVADEKGLAFEVNL 928

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------------RDNGDF 719
            +      F+ D QRL Q+   +LSN++ F+  G TV L                R  G  
Sbjct: 929  AADVPAEFITDEQRLQQVLKNLLSNSVKFTDSG-TVRLDVTLARPDLPHLASHLRSAGTV 987

Query: 720  I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + F+V + G  I  +  + +F  F        RR  G GLGLSI +    L GG +++SS
Sbjct: 988  LSFAVSDTGIGIAAEKLRMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSS 1047

Query: 777  SDEGVTTINCRIPS 790
            +    +T    +P+
Sbjct: 1048 AVGHGSTFTLYLPA 1061


>gi|307610618|emb|CBX00206.1| Legionella transmission sensor LetS [Legionella pneumophila 130b]
          Length = 909

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IGFT++L  SKL  L   Q  YV+ I +S+  LL+++NDIL
Sbjct: 297 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINDIL 353

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + +DAG + L+   + +   ++EV    +   H+  I +  I+D  +   V  D  R+
Sbjct: 354 DFSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKKGIDLIPITDINVPKMVLGDPLRI 413

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740
            QI S +++NA+ F+  G  +I        D     +F++ + G  I PED  K  + FN
Sbjct: 414 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 473

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++  R +  G GLGL I +       G +S++S     +T + RI
Sbjct: 474 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 520


>gi|301310964|ref|ZP_07216893.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831027|gb|EFK61668.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 769

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 132/241 (54%), Gaps = 12/241 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +K + + +++ +K++F+ ++S+E+R+PL  I+GF++LL  +   + + +  ++ E
Sbjct: 534 EQELRDKAK-VEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQT---NPSEETKEFCE 589

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++ +LL LVNDILDL+ ++AG M   YS   ++ L   + Q+  +++ +  + +  
Sbjct: 590 IIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRV-KGGVTLYC 648

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +     +++ RL Q+ +  L+NA  F+ +GS  +    R++G + F VK+ G  I 
Sbjct: 649 EIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDGLY-FYVKDTGKGIE 707

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVT---TINCR 787
                 VF RF       Q  G GLGLSI ++ + NLHG     S   +G T   TI C 
Sbjct: 708 RKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIPCA 765

Query: 788 I 788
           +
Sbjct: 766 V 766


>gi|300866840|ref|ZP_07111517.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335150|emb|CBN56677.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1017

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 148/294 (50%), Gaps = 19/294 (6%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R S Q   E++ +    + +  L  A  M   + +     ++ AL +  E    A+  K+
Sbjct: 491 RNSFQLWKEIVQEKSYPWRVEELQTAAEMRNTLMLAMLEFSQAALEQAAERAAIANRAKS 550

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+P+  I+GFT ++  S+  ++  +  +++  IS S   LL L+ND+L++
Sbjct: 551 QFLAKMSHELRTPMNAILGFTQIMSRSQ--NIPPEFQEHLGIISRSGEHLLTLINDVLEM 608

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG + L  S   +   ++ +++  A K  E  + +++  +  +  +V  D+ +L Q
Sbjct: 609 SKIEAGQLVLTESCFDIVRFIHSIQEMFALKASEKGLMLRIEQEINVPPYVYGDQAKLRQ 668

Query: 690 IFSKILSNAMDFSSKGS-TVILKAARDNGDFIFS--VKNNGSSIP-----ED------MC 735
           I   +LSNA+ F+  GS T+ +K   +  D I S  V+  GS+I      ED      +C
Sbjct: 669 ILINLLSNAIKFTINGSITLRIKVIPEIDDAIDSSKVEALGSAIALYLEVEDTGCGIALC 728

Query: 736 --KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +SVF  F+        +G GLGLSI   F  L GG +++ SS    +   C+
Sbjct: 729 DLESVFEAFMQTERGRHAQGTGLGLSISRQFARLMGGDITVQSSLNQGSIFTCK 782


>gi|270158414|ref|ZP_06187071.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae D-4968]
 gi|289166747|ref|YP_003456885.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae NSW150]
 gi|269990439|gb|EEZ96693.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae D-4968]
 gi|288859920|emb|CBJ13906.1| putative sensory box histidine kinase/response regulator
           [Legionella longbeachae NSW150]
          Length = 813

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 127/242 (52%), Gaps = 15/242 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A+  K  F+ ++S+++R+PLT +IG +++L+ +    L+ +++     +  S   LL 
Sbjct: 263 KQAEIAKTEFIANMSHDIRTPLTGVIGLSEILEKNLTNPLHKEEAHL---LYESGNQLLT 319

Query: 623 LVNDIL-DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF- 680
           ++N+IL D+    A  M ++     L   ++++ +  A  +   N+      D  +  F 
Sbjct: 320 MINEILEDVRAGSANDMDIHEEAFELRQCIDDLIKLEAPTIATKNLTFTCTVDSHVPQFI 379

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCK 736
           V+DR+++  I   +L NA+ F+  G   +         F     FSV + G  IPE    
Sbjct: 380 VSDRKKIHHILLNLLGNAIKFTQAGGITLTVKPLSFTAFHTLLHFSVSDTGIGIPEMQKD 439

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT---TINCRIPS 790
            VF +F  V+ ++ G + G GLGL IV+S++ L GGH+++ S + EG T    +NCRI  
Sbjct: 440 KVFEQFFRVNPSYEGNQTGYGLGLHIVQSYVTLLGGHLTLESKEGEGTTLSFDLNCRIGC 499

Query: 791 KE 792
           KE
Sbjct: 500 KE 501


>gi|83815367|ref|YP_446672.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756761|gb|ABC44874.1| sensor histidine kinase with a PAS domain [Salinibacter ruber DSM
           13855]
          Length = 720

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 127/255 (49%), Gaps = 11/255 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-------DLLKTS 597
           V D +R E AL +  EA  +A  +K++ + ++S+E+R+PLT+IIGF+       DLL+ +
Sbjct: 451 VLDRLRREAALRDAKEAAEEASRLKSTMLANMSHEIRTPLTSIIGFSETIEEEADLLEAT 510

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +  S  S++   I  +   LL+ ++ +L+L+ ++AG M L    I L++L   +   
Sbjct: 511 PADANPSTLSRFAHLIGKNGRRLLDTLDGVLNLSRLEAGQMDLAAERIPLDELAKGLVDE 570

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +  E  +  +V    +      DR  +      ++SNA+ ++ +G  V +++ R   
Sbjct: 571 LHPQAEEAGVHCEVEKTPRPVVARVDRGGMQIALRNLISNAIKYTEEGGRVRVRSYRAED 630

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774
             +  V++ G  +  D  + VF  F   A  G  R   G GLGL++ +  I    G + +
Sbjct: 631 AAVVEVEDTGIGMDADTVEHVFEPF-RQASEGLNREYEGTGLGLAVTKQVIEKMNGDIEV 689

Query: 775 SSSDEGVTTINCRIP 789
            + ++  T +  R+P
Sbjct: 690 DTEEDAGTCVRLRLP 704


>gi|330901754|gb|EGH33173.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 343

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+
Sbjct: 19  RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSA 74

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +   V  D 
Sbjct: 75  DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 134

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSI 730
            L +   D  RL QI + ++SNA+ F+ +G T++ +A       ++     SV++ G  +
Sbjct: 135 PL-ALSGDPLRLRQILTNLVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGL 192

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 193 SSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 241


>gi|270293534|ref|ZP_06199736.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270275001|gb|EFA20861.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 649

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L     A+ K  ++K+SF+QH+++E+R+PL +I+GF+ LL   KL  +  +  +YVE 
Sbjct: 412 RKLEAARRAVEKMSQVKSSFIQHITHEIRTPLNSIVGFSTLLAQEKLDDVEKR--EYVEQ 469

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++T LL+L+ +IL++A +D+ + ++    I ++    E  +    ++ +  + ++ +
Sbjct: 470 VEGNNTYLLSLMENILNIADMDSRVWEMPREEIEVDACCKECIEGFRPEL-KPGVELEYV 528

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI 730
               + +F A RQ L  +   +L NA+ F+ +G  + +    D    +  F +++ G  I
Sbjct: 529 PASGIMAFYAARQWLKMVLVSLLDNAVKFTEEGH-IRVSCEEDKSRHVLRFVIEDTGIGI 587

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             D    +F RF         +G GLGL+I    + L GG + +  +  G        P 
Sbjct: 588 RPDESDRIFERFYKVDTFT--KGSGLGLAIANEIMELVGGRIYLDDTYCGGCRFIVEWPM 645

Query: 791 KE 792
           K+
Sbjct: 646 KD 647


>gi|262395232|ref|YP_003287086.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25]
 gi|262338826|gb|ACY52621.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25]
          Length = 784

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S    L  +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS---PLTEEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    DF   I  V++
Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEDDFATIIMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPED    +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 TGIGIPEDELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 500 STFTVSIHVP 509


>gi|262404692|ref|ZP_06081247.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC586]
 gi|262349724|gb|EEY98862.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC586]
          Length = 785

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAELEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A  +    D    V++
Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDEQYADITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPETELEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|262042771|ref|ZP_06015924.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039838|gb|EEW40956.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 755

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L S+Q +Y
Sbjct: 240 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 296

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++     +  +  +R 
Sbjct: 297 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 356

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++   D GD 
Sbjct: 357 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 407

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IPE     +F  +  V ++H G+   G G+GL++        GG +S++
Sbjct: 408 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 467

Query: 776 SSD-EGVT-TINCRIPS 790
           S   +G T T+    P+
Sbjct: 468 SQPGKGATFTLTVHAPA 484


>gi|303313435|ref|XP_003066729.1| Histidine Kinase A (phosphoacceptor) domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106391|gb|EER24584.1| Histidine Kinase A (phosphoacceptor) domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 762

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 19/238 (7%)

Query: 549 VRAERALTEKNEA-------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           V+  R LTE+  A         +  ++K+ F+ ++S+E+R+P+  ++G   LL ++   +
Sbjct: 362 VKVVRDLTERKAAETRLIAAYEETSKLKSDFLANMSHEIRTPMNGVLGALSLLNST---A 418

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+  Q +Y   I  S+++LL L+NDILD + + +G   L      +  ++N V Q+   +
Sbjct: 419 LSQNQREYATIIEESTSVLLRLINDILDYSKLSSGSFSLTTDVFSVESIVNSVIQNCPPR 478

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716
             E  I +K I D    S V  D  R  QI   ++ NA+ F+ KG     T   +  RD+
Sbjct: 479 NPE--IEVKSIIDPGFPSHVKGDPLRFRQILQNLVGNAVKFTDKGYIHVRTCFKEDERDD 536

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 V ++G  + ++   ++F  F  +A+   +R  G GLGLSI +S   L GG V
Sbjct: 537 YSVTVEVIDSGIGVADEAMNTLFAPFTRSANSATKRYQGTGLGLSICKSLAELMGGAV 594


>gi|218438110|ref|YP_002376439.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7424]
 gi|218170838|gb|ACK69571.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7424]
          Length = 577

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +   + +Q +++E 
Sbjct: 305 QELEQATHAAEEASRLKSEFLASTTHELRTPLNGIIGFLKLI-LDGMADDSEEQQEFLEE 363

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670
              S+  LLNL+NDILDLA ++AG M L    + L +LL  V    A +  +  +  +IK
Sbjct: 364 AHKSALHLLNLINDILDLAKIEAGKMVLELEPVDLEELLTAVNNFTAPQAEQKGLTFKIK 423

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGDFI 720
                   +   + QRLLQ+   ++ NA+ F+ +G  V+                 G   
Sbjct: 424 KPQTHTPITLYGNYQRLLQVMLNLVGNAIKFTHEGGIVVSAEIVKKKILCHEQEFPGIVK 483

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  +    +F +FV    +      G GLGL+I +  +   GG +   S  
Sbjct: 484 ISVADTGIGVSLEQQAKLFEKFVQIDGSRTKAYGGTGLGLAISQKLVQAMGGQIDFYSMG 543

Query: 779 EGV-TTINCRIPSKE 792
           EG+  T+    P +E
Sbjct: 544 EGLGATVTFTTPLQE 558


>gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1067

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 10/241 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +TD  + E  L E  E    A+  K+ F+  +S+E+R+P+  IIG T LL  ++L     
Sbjct: 385 ITDRKQVEDMLKEAVERAEAANRAKSEFLATMSHEIRTPMNGIIGMTGLLLDTQL---TR 441

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  +   +  S+  LL+++NDILD + ++AG ++  Y    +  L+  V   +A ++  
Sbjct: 442 EQMHFANTVRTSAEALLSIINDILDFSKMEAGRLEFEYGPFEIRPLIEGVVDILAPRVKG 501

Query: 665 NNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI-- 720
            N+ +  V+     G F  D  RL Q+   +  NA+ F+  GS  I ++A  +  D +  
Sbjct: 502 RNVELTYVVPPSARGVFYGDAGRLRQVLLNLAGNAIKFTEIGSVHIGIRAETEFDDMVRL 561

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I ++    +F  F        RR  G GLGL+I    +++ GG +   S+
Sbjct: 562 RIEVVDTGIGISDNAKSRLFTMFTQADSSTARRFGGTGLGLAISRRIVDMMGGEIGFDST 621

Query: 778 D 778
           +
Sbjct: 622 E 622


>gi|91772950|ref|YP_565642.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711965|gb|ABE51892.1| fixL-like, HATPase domain-containing PAS sensor signal transduction
           histidine kinase [Methanococcoides burtonii DSM 6242]
          Length = 396

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 141/271 (52%), Gaps = 5/271 (1%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           ++LE ++I   + +    FV + D   + +AE AL         A+  K+ F+ +VS+EL
Sbjct: 124 AILECNLILDGDNEPSYIFVALRDLTVTKKAEDALKRAMSIADAANCSKSEFLANVSHEL 183

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL +I+GF+++L   + G LN  Q +YV+ +S +   L  ++N+IL+++ ++AG  ++
Sbjct: 184 RTPLNSIVGFSEILLDGRCGGLNDVQRRYVQNVSNNGNHLSEIINEILEISKIEAGKAEV 243

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N     +   + EVK+S+   +   NI      + +L     D+ +   I   +L NA+ 
Sbjct: 244 NLEDFCILPSVMEVKESLMHSISLKNISFVCDVNPELHPIRLDKTKFKHILHHLLINAVK 303

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           F+S   +V + A+  +      + ++G  IP +    ++++F  V  + + +  G GLGL
Sbjct: 304 FTSDHGSVGIHASAISDMMHIVIFDDGIGIPREQLPHLYDKFYQVDGSTKRKYGGTGLGL 363

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ +  + L+ G + + S     T ++  +P
Sbjct: 364 ALTKKLVILNSGQMWVESEVNVGTKVHMMLP 394


>gi|99082681|ref|YP_614835.1| hypothetical protein TM1040_2841 [Ruegeria sp. TM1040]
 gi|99038961|gb|ABF65573.1| sensor histidine kinase protein [Ruegeria sp. TM1040]
          Length = 516

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 118/253 (46%), Gaps = 2/253 (0%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           V  EI   + +    +    L++ +AIFD+NR L   N   ++L  +  +FL++ P+   
Sbjct: 246 VDAEIAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALPASFLSSRPNMMS 305

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGT 412
             + LR    +PE  N+ +W+  +  + +++    +++TW LP+G    V    +P G  
Sbjct: 306 FFDRLRDQRMMPEPKNYSSWRHQMADLLEAAAEGRYQETWSLPSGSVYSVSGRPHPDGAI 365

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            ++FE++T ++ L  ++ + +++    +DH+ +  AVFG DG +  SN A+ ++WKT+ +
Sbjct: 366 AFLFEDITAEITLTRQFRSELELGQSILDHIDDAFAVFGADGSMVYSNTAYHTMWKTDPD 425

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                  I +   T       +  W      +     +R      +++ +   L   +  
Sbjct: 426 ASFAKITITDACRTWQELSGPTPTWGEVRDFVAGGTSDRSDWWSRVDMRNGEQLLCRVQS 485

Query: 533 LPNAQTMLTFVNV 545
           L N   M+ F  +
Sbjct: 486 LQNGSVMVRFQQI 498


>gi|328869028|gb|EGG17406.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1323

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 20/244 (8%)

Query: 551 AERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           A R L E + ALRKA+   E K +F+ +VS+E+R+P+  I+   D+L+ +   +L++ Q 
Sbjct: 394 ARRKLMEADTALRKAEAVNEAKINFLTNVSHEVRTPINGILASVDILEKT---NLDNTQG 450

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++  +  S+  LL+L+ DILD + +++G M+L      +  +L E    + +   E  +
Sbjct: 451 DFLVCVKDSANYLLDLITDILDFSKIESGKMQLQPVEFNMITMLEETMNIVYSTTKERGL 510

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARD 715
            + +  D  +    VAD  R+ QI    LSNA+ F+S G  VI              +  
Sbjct: 511 ELILFVDPAIPIIVVADHYRIKQILLNFLSNAIKFTSTGQVVIRVNFVSCTPSVANPSST 570

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                F V+++G  + ++  + +F  F+   + G R  +G GLGLSI +   N+ GG ++
Sbjct: 571 EFKISFEVEDSGIGLRQEQIEKLFTAFLQFDNHGSRNFQGTGLGLSISKKLCNMMGGEIT 630

Query: 774 ISSS 777
           + S+
Sbjct: 631 VKST 634


>gi|220909132|ref|YP_002484443.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
 gi|219865743|gb|ACL46082.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
          Length = 1255

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 3/218 (1%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +A+  K+ F+  VS+ELRSPL  I+G+  LL+T        ++   +E I  +    + L
Sbjct: 1025 QANRAKDEFIAVVSHELRSPLNAILGWAKLLQTRSFEPAMLRRG--LETIERNVETQVQL 1082

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            + D+LD++ +  G ++LN+  + L  L+ E   ++   +    + +      +      D
Sbjct: 1083 IEDLLDISRMVRGTLRLNFMPVNLVALVEETLLNLQPSITAKQLDLGYYPGSEEIRVAGD 1142

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
              RL QIF+ +L+NA+ F+  G  V ++           V + G  I  D    +F+RF 
Sbjct: 1143 LHRLQQIFANLLTNAIKFTPAGGQVEVRLVNCGAQVQIMVIDTGKGIAADFLPYIFDRFR 1202

Query: 743  VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              N  R  + G+GLGL+IV   + LH G +  +S+  G
Sbjct: 1203 QGNDAREPQEGLGLGLAIVRHLVELHKGTIQAASAGPG 1240


>gi|188990705|ref|YP_001902715.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris
            str. B100]
 gi|167732465|emb|CAP50659.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1292

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+  + +E+R+P+T ++G ++LL  ++L   + KQ  Y E I  + 
Sbjct: 911  KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQL---DHKQRSYTESIRRAG 967

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            + LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G L
Sbjct: 968  SHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEVGLL 1026

Query: 678  GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
            G   A  D  R+ QI   +LSNA+ F+ +G   + L          F V + G  I  D 
Sbjct: 1027 GDITASGDPTRIRQILLNLLSNAIKFTERGVVGLKLSTLGSYQGLRFEVADTGPGINADQ 1086

Query: 735  CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F RF   +  +   R  G GLGL+I +      GGH+ + S
Sbjct: 1087 KVRLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1131


>gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 449

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 161/352 (45%), Gaps = 34/352 (9%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV V   DGR+ L N    +L+     +L+     + +      Y  E            
Sbjct: 115 GVMVLDRDGRVILVNKGLENLF----GKLNFTGEPKPLLEVIRNYELE------------ 158

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEA 561
                 K L+  L  L +   E   + LPN++T+L  V        ++    A+ +    
Sbjct: 159 ------KFLKEALANLKEMTREIEFL-LPNSKTILIHVTPLKDEHDQKVGLVAVFDDITE 211

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTI 619
            RK +++++ F+ +VS+ELR+PLT+I GF   L+T   G+L  K     +++ +++ +  
Sbjct: 212 ERKLEKMRSEFIANVSHELRTPLTSIKGF---LETLLDGALEDKTIAKHFLQIMNSETER 268

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L++D+L L+ ++A  +      ++L +L+ ++K    +++ E  +   +     L  
Sbjct: 269 LTRLIDDLLSLSKIEAKKVDFAPKPLMLQELIQKMKLLFKSRLEEKELSFIISLPENLPL 328

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD   + Q+   ++ NA+ ++  G  + + AA         VK+ G  IPE+  K +F
Sbjct: 329 VLADGDMISQVLINLIDNAIKYTPAGGKIEVTAAVKGSWVEVVVKDTGIGIPEESQKRIF 388

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A   +  G GLGL+IV+  I LH G V + S     +     IP
Sbjct: 389 ERFYRVDKARSRELGGTGLGLAIVKHIIELHNGKVWVKSKVGEGSAFGFTIP 440


>gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
 gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
          Length = 650

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE      NE L++ D++K+  V  VS+ELR+PLT+I G+ +L+    +G++   Q + 
Sbjct: 410 QAEELEKSYNE-LKELDKLKSDIVAIVSHELRTPLTSIKGYVELVLDGTMGAITESQKKC 468

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E  + +   L  L++++LDL+ ++ G ++++   I L +L+  V  ++     E NI I
Sbjct: 469 LEIANKNIDRLKRLIDNMLDLSKIEHGELEMHMEEINLKELVENVVDTLKPLADEKNINI 528

Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
                 K+   +   D+ R+ Q+ + ++ NA+ FS     V ++A ++       + +NG
Sbjct: 529 IY----KINDIIMKGDKDRITQVLTNLIENAIKFSPVNGKVEIQALKEGNSVHIKIIDNG 584

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP+     +F+RF  V +  +  + G GLGL++ +S I  HGG + + S
Sbjct: 585 PGIPKKDLDRIFDRFYQVDSPEKRIKGGSGLGLAVCKSIIETHGGTIWVES 635


>gi|298530356|ref|ZP_07017758.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509730|gb|EFI33634.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 784

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 124/231 (53%), Gaps = 14/231 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +N A ++A + K++F+ ++S+E+R+P+  I+GF  +L+      L  +Q+ +++ I+ S 
Sbjct: 300 RNRA-QEASKAKSTFLANMSHEIRTPMNAILGFAQVLEQDP--DLTPRQAGHLKTITRSG 356

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+NDILD++ ++AG ++ +     L D+L ++    +++     ++  +  D  L
Sbjct: 357 NHLLRLINDILDMSKIEAGQVQSSPEDFGLVDMLEDMGLMFSSRAEAKGLQFILERDRHL 416

Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD-------FIFSVKNN 726
            G+  AD+  L QI   +L NA+ F+S G     V  + A+D G+           V+++
Sbjct: 417 PGNIRADQGMLRQIMVNLLGNAVKFTSSGGVACRVRTEPAQDTGEKDDSRLRLTIEVEDS 476

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           G  I E   + +F  F       +  G GLGL+I  SF  L GG + +SS+
Sbjct: 477 GPGIQEIDQQKLFEPFQQAEEGIKEGGTGLGLAISRSFARLMGGDIEVSST 527


>gi|167570252|ref|ZP_02363126.1| response regulator/sensor histidine kinase [Burkholderia
           oklahomensis C6786]
          Length = 656

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +LLK    G    +Q + +
Sbjct: 37  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELLKE---GLRTPEQQRLL 89

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +RI+
Sbjct: 90  SLVQDSGQSLARVLNDILDHASIEAGQFAIERTRVDVRELVDSVTAMLAVHAHRKGLRIR 149

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D  D     + ++ +
Sbjct: 150 LHVDADVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADVVDGSVEIVATIAD 209

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  FV  A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 210 TGIGIAADELRRLFTPFV-RARRGARRTEPGTGLGLAIARRLARLLGGDVTLASEEGRGT 268

Query: 783 TINCRI 788
           T   RI
Sbjct: 269 TATARI 274


>gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 483

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 16/274 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++ P+ +   ++  V V    R ER     L    E    A   K  F+  +S+E+R+PL
Sbjct: 171 TVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPL 230

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T ++G  DLL  ++L   +S Q QYV    A+   LL+L+N ILDL+ ++AG +++    
Sbjct: 231 TAVLGMADLLDKTRL---DSHQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVE 287

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L+ L+ +  + +  +  +  +     S       V  D  R+ Q+   ++ NA+ F+ 
Sbjct: 288 FDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTE 347

Query: 704 KGSTVI----LKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           +G  ++    L AA       F  +V + G  IP    + +F  F        RR  G G
Sbjct: 348 EGRVMVELACLPAAPPYPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTG 407

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I    + + GG +S+ S + G +T    IP
Sbjct: 408 LGLAISRKLVTMMGGQISLVSREGGGSTFTMEIP 441


>gi|192362033|ref|YP_001983813.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
 gi|190688198|gb|ACE85876.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
          Length = 1321

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 8/235 (3%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            ++ D++K  F+  VS+ELR+PLT I G   +L     G+L    ++ ++    ++  L++
Sbjct: 934  KRVDKMKAEFISTVSHELRTPLTAISGALGILTAGGAGTLPEAATRMLQIAHNNALRLIH 993

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENNIRIKVISDGKLGS 679
            LVND+LD+  + AG M+     I +  LL  V+QS+   A+   + ++   +  D     
Sbjct: 994  LVNDLLDMEKLVAGKMQFE---IHMQSLLPIVRQSLETNASYAAQFHVHYVLDPDSDDAM 1050

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
               D  RL Q+ +  LSNA  FS     V +   R  G    +V ++G  IPE     +F
Sbjct: 1051 VSVDSLRLEQVLANYLSNAAKFSPPNGQVWVNIRRRMGSVRVTVTDHGRGIPEAFRARIF 1110

Query: 740  NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            ++F    ++   Q+ G GLGL+I +  I   GG V   S++    +    +P ++
Sbjct: 1111 HKFSQADSSDSRQKGGTGLGLAICKELIERMGGKVGFDSAEGQGASFYFELPCED 1165


>gi|170764179|ref|ZP_02633654.2| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170661001|gb|EDT13684.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
          Length = 821

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487
           +++G T +++ + +     +G+I   N A   +    E  L    +        N+    
Sbjct: 434 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546
           S+Y+NE         I+T   D+ +S +G ++L S S    S I   N    L +V V  
Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538

Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603
             + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     LL TSK    N 
Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598

Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L  ++  S+   +
Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +    D       
Sbjct: 659 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADETWVDIR 718

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IP  M + +F RF+ N     R   G G+GLS+V+S + LH G V +  S+E 
Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778

Query: 781 VTTINCRIPS 790
            +  +  +P+
Sbjct: 779 GSEFSILLPN 788


>gi|144898726|emb|CAM75590.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 710

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 2/231 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  L +      +A++ K+ F+  +S+ELR+PL  +IGFT LL+T + G LN KQ+  
Sbjct: 316 RQQHDLEQAKLGADRANQAKSEFLSSMSHELRTPLNAVIGFTQLLRTERPGPLNEKQAGQ 375

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +++I      LL L+N++LDLA ++ G + L+   I    ++NE          E  + I
Sbjct: 376 LDHILRGGQHLLELINEVLDLARIETGKLSLSVEVIDPVVVMNECLAFGRAYARERGVEI 435

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGS 728
                G +     D  R  QI   ++SNA+ ++     V L A     G   FS+ + G 
Sbjct: 436 GEWQGGPVLPISVDYTRFKQILLNLISNAIKYNRADGRVTLTAQPWGTGMMRFSIADTGP 495

Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            I  D    +F  F    A      G G+GL+I +  +    G +   S +
Sbjct: 496 GIARDKQAHLFEPFNRLGAESRDVEGTGIGLTITKRLVQAMNGLIGFHSQE 546


>gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 993

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 15/280 (5%)

Query: 525 VLEYSI--IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +L +S+   P+     ++TF ++T     + AL +  +A   A+  K+ F+ ++S+E+R+
Sbjct: 268 MLTFSVNCTPIAGQGYLVTFEDITLIEENKVALAKARDAAENANAAKSDFLANMSHEIRT 327

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++GFTD+L+   L S   +   ++  I  S   LL L+NDILDL+ +++G ++   
Sbjct: 328 PLNAVLGFTDVLRRG-LVSNGDEAVDHLNMIHRSGAHLLELINDILDLSKIESGHLQTET 386

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
               L+D++ +V  ++  K  E N+ +KV     +   + +D  RL Q+ + ++ NA+ F
Sbjct: 387 IDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAIPRTIQSDPTRLRQVITNLVGNAIKF 446

Query: 702 SSKGSTVILKA-------ARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           +  GS  I+ +       A +  D I  V   + G  +  D    +F+ FV       R+
Sbjct: 447 TESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRK 506

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGLSI        GG +++ S     +T    +P+
Sbjct: 507 FGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFRVELPT 546


>gi|325920273|ref|ZP_08182220.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325549247|gb|EGD20154.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 1061

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL++KQ  Y E I  + 
Sbjct: 779 KQEIAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDNKQRSYTESIRRAG 835

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G L
Sbjct: 836 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQERGLRFS-LEVGLL 894

Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
           G   A  D  R+ QI   +LSNA+ F+ +G   + L          F V + G  I  + 
Sbjct: 895 GDITASGDVTRIRQILLNLLSNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 954

Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +F RF   +  R   R  G GLGL+I +      GGH+ + S
Sbjct: 955 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVIS 999


>gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 575

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 127/238 (53%), Gaps = 14/238 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K + +++ FV +VS+EL++PLT+I GF + LK    G+++ K    +++  I      
Sbjct: 339 LKKLERVRSDFVANVSHELKTPLTSIKGFVETLKD---GAIDDKDVAIKFLNIIEVEVER 395

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKL 677
           L+ L+ND+L L+ ++   M +    + + +++ E  + +  K  + NI+  IKV    ++
Sbjct: 396 LVRLINDLLYLSEIENAAMPILDEKVAVKEVVLESIELLKIKAEKKNIQFDIKVPEGLEM 455

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             +   R  L QIF  ++ NA+ ++ +   V +   + NG  +  VK+ G  IPE   + 
Sbjct: 456 NIY---RDWLKQIFINLIDNAIVYNKENGKVWVTLEKPNGMVVIKVKDTGIGIPEKEIER 512

Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F RF     +G+ R   G GLGLSIV+  + L+GG + + S +   +     IP K+
Sbjct: 513 IFERF-YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGSGSEFTVTIPIKK 569


>gi|152972133|ref|YP_001337279.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238896716|ref|YP_002921461.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150956982|gb|ABR79012.1| aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase, sensor for arcA [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238549043|dbj|BAH65394.1| aerobic respiration sensor-response protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 779

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L S+Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++   D GD 
Sbjct: 381 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 431

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IPE     +F  +  V ++H G+   G G+GL++        GG +S++
Sbjct: 432 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 491

Query: 776 SSD-EGVT-TINCRIPS 790
           S   +G T T+    P+
Sbjct: 492 SQPGKGATFTLTVHAPA 508


>gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1358

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 8/244 (3%)

Query: 540 LTFVNVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           L       +V++ RA  E   + EAL K D+ K +F  ++S+E R+PLT ++G  +    
Sbjct: 369 LVGAQAATAVQSARAFEEEKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQ 428

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L  +Q      +  +   LL LVN +LD + ++AG +K  Y    L+    ++  
Sbjct: 429 DTGEPLPPRQRDRQLMVHRNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLAS 488

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
           +  + M +  + ++V           DR+   ++   +LSNA  F+  G   V L+A  D
Sbjct: 489 AFRSLMEKAGLSLQVDCPWLAAPVYVDREMYEKVVLNLLSNAFKFTFVGGVRVSLRAEAD 548

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               + +V ++G+ IPE     VF RF  V  A      G G+GL++++  + LHGG +S
Sbjct: 549 RA--VLTVADSGTGIPEAELPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLS 606

Query: 774 ISSS 777
           + S+
Sbjct: 607 VESA 610



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            V+VT+ V A R      E L+ AD+ K+ F+  +++ELR+P+  I     +L+ S+    
Sbjct: 935  VDVTEQVLARRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALSMLERSE--GD 992

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +K +++ E        L+ LV+D+LD++ +  G M+L   T+   DL   V+ ++A   
Sbjct: 993  TAKLARHRETARRQMGNLVRLVDDLLDVSRITRGKMELRKETV---DLAVLVQNALAVTR 1049

Query: 663  HENNIRIKVISDGKL-GSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NG 717
                 R   +S   + G F   AD  RL Q+   +L+NA  ++  G  + +  +R+  NG
Sbjct: 1050 PLIEARGHTLSVALIPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSLSREGLNG 1109

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                +  VK+ G  IP DM   VF  FV  A    R   G+GLGL++V+  + +HGGH  
Sbjct: 1110 TRQAVLRVKDTGRGIPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTLVKRLVEMHGGHAE 1169

Query: 774  ISSSDEGV-TTINCRIP 789
              S   G  +    R+P
Sbjct: 1170 AFSQGPGQGSEFTVRLP 1186


>gi|20271014|gb|AAM18499.1|AF494374_1 ethylene receptor 1 [Arabidopsis lyrata subsp. lyrata]
          Length = 505

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 128 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            + DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 305 RDADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 363

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383


>gi|83720083|ref|YP_443190.1| sensor histidine kinase/response regulator [Burkholderia
           thailandensis E264]
 gi|167620368|ref|ZP_02388999.1| sensor histidine kinase/response regulator [Burkholderia
           thailandensis Bt4]
 gi|257139424|ref|ZP_05587686.1| sensor histidine kinase/response regulator [Burkholderia
           thailandensis E264]
 gi|83653908|gb|ABC37971.1| sensor histidine kinase/response regulator [Burkholderia
           thailandensis E264]
          Length = 651

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 32  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 84

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A + H   +R++
Sbjct: 85  SLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVQAHRKGLRVR 144

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D  D     + +V +
Sbjct: 145 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRATDAVDGSVEIVATVVD 204

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  FV  A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 205 TGIGIAADELRRLFTPFV-RAARGARRTESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 263

Query: 783 TINCRI 788
           T   RI
Sbjct: 264 TATARI 269


>gi|332140190|ref|YP_004425928.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550212|gb|AEA96930.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 962

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 165/361 (45%), Gaps = 45/361 (12%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE---NRLSPGTHIRNIAAT------CSR 489
           D + EGV     +G+ +  NPA   L  W  EE    R     H +    T      C  
Sbjct: 137 DSIGEGVYAVNAEGKTQFLNPAASRLLGWTLEELQDRRFHDTVHYQKGDGTLLKREQCPV 196

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVT 546
                DG        TS++D     +G L          SI+ +P   N       V V 
Sbjct: 197 NLTIRDGKSY-----TSYEDFFTDKRGRL-------FPISIVAVPLLNNEGKPDGHVGVF 244

Query: 547 DSVRAERALTEK-----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           + + +++A+  K     +EA + A++ K  F+  +S+E+R+P+  IIG T L L+T    
Sbjct: 245 NDISSQKAIEHKLQKAYDEA-QSANKAKTDFLATMSHEIRTPMNAIIGLTHLALETQD-- 301

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             N ++ QY+E +  SS  LL L+N ILD + V+A  + +      L   ++++ Q    
Sbjct: 302 --NDQRQQYLEKVQKSSNALLELMNSILDFSKVEANKIDILDEPFTLTKTIDKLAQVFQV 359

Query: 661 KMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           K  +   +++++ D +  + +    D +++ Q+   +LSNA+ F+  G  V+LK  +   
Sbjct: 360 KAQQK--QLQLLFDIRCSTKIRCSGDSEKIYQVLLNLLSNAIKFTETGH-VLLKIDKRGN 416

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           +  FSV + G  I +     +FN F        R+  G GLGL+I +  + L GG ++I 
Sbjct: 417 ELGFSVSDTGMGISDTGKTKLFNAFEQADASISRKFGGTGLGLAICKRLVELMGGELTIE 476

Query: 776 S 776
           S
Sbjct: 477 S 477


>gi|117925572|ref|YP_866189.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609328|gb|ABK44783.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 685

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 130/267 (48%), Gaps = 27/267 (10%)

Query: 534 PNAQTMLTFVNVTD---SVRAERALTEKNEALRK--------------ADEIKNSFVQHV 576
           P+ +     + + D   +V+ E+ L E+   L +              A++ K+ F+ ++
Sbjct: 115 PHGEKRFVLIQIQDISHTVQREQLLQEQTRVLMQREEELTASRLKADQANQAKSEFLANM 174

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  IIG  DLL  ++   LN  Q +YV+  + +   LL L+ND+LDL+ V+A 
Sbjct: 175 SHEIRTPMNAIIGMADLLLETE---LNKDQRRYVQIFARAGASLLELINDVLDLSKVEAD 231

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKIL 695
            ++L +    L  L+    +    +  E  +++      +   +V +D++RL QI   +L
Sbjct: 232 RLELEHRPFDLWALVEGAVEIFTLRTQEKGVKLDFELSARAPRYVISDQKRLRQILVNLL 291

Query: 696 SNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA+ F+  G   +    RD     G   F V+++G  + +   KS+F  FV       R
Sbjct: 292 GNAVKFTQSGQIQLWVDVRDCEDAGGWLYFRVQDSGIGMSKAQQKSIFEPFVQADASVTR 351

Query: 752 R--GVGLGLSIVESFINLHGGHVSISS 776
           +  G GLGL+I +  + L  G + + S
Sbjct: 352 QHGGTGLGLAICKKLVELLSGDIWLES 378


>gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
 gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
          Length = 1381

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 4/244 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R+ +A   + E L + D  K +F  ++S+E R+PLT I+G  D L+  +L   + +  
Sbjct: 328 SARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPLDELR-GRLQGADEQVR 386

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  +   L NLVN +LD + ++AG M+  Y  + L  +  ++     + +    +
Sbjct: 387 TELDVIRRNGLRLGNLVNSLLDFSRIEAGRMQARYEPVDLAAVTADLASVFRSAIERAGL 446

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +V           DR    ++   +LSNA+ F+  G T+ ++   D    +  + + G
Sbjct: 447 SFEVDCPPLPEPVHLDRGMWEKVVLNLLSNALKFTFDG-TIRVELRADGDAAVLRISDTG 505

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +P D    +F RF  + NA      G G+GL++V+  + LHGG +  SS+    TT  
Sbjct: 506 IGVPADEMPRLFERFHRIENARSRSDEGSGIGLALVQELVTLHGGDIDASSAVGRGTTFT 565

Query: 786 CRIP 789
            R+P
Sbjct: 566 IRLP 569


>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
          Length = 1252

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 127/243 (52%), Gaps = 16/243 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  ++ E  L +  E    A++ K+ F+ ++S+E+R+P+  ++G   L+  S   +L+
Sbjct: 496 DLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANS---TLD 552

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y+E   +++  LL L+NDILD + ++AG ++L+     L DLL ++    ++   
Sbjct: 553 QRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAE 612

Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
           +  + +   V +D      + D  R+ Q+   ++ NA+ F+ KG   IL + R       
Sbjct: 613 QKGLEVLYDVTADVP-EHLLGDSFRIKQVLINLVGNAIKFTDKGE--ILISIRSQSLPEG 669

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +  FS+K+ G  I  +   ++F+ F        RR  G GLGL+I +  +NL GG + 
Sbjct: 670 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 729

Query: 774 ISS 776
           + S
Sbjct: 730 VES 732


>gi|167768191|ref|ZP_02440244.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1]
 gi|167709715|gb|EDS20294.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1]
 gi|291560213|emb|CBL39013.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 982

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 148/268 (55%), Gaps = 19/268 (7%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N + +L   + T   +  +AL++   A   A++ K++F+ ++S+++R+P+  IIGFT L 
Sbjct: 437 NKKYILVMSDRTADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTL- 495

Query: 595 KTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
               + ++++K+    Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+
Sbjct: 496 ---AVSNIDNKKMVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLH 552

Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           ++K  I+ ++H   + + + + D        D+ RL QI   +LSNA+ F+  G  + ++
Sbjct: 553 DLKTIISGQIHAKQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVR 612

Query: 712 ------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIV 761
                   R+   +   VK+NG  + ED  + +F+ F     S   R Q  G GLG++I 
Sbjct: 613 LKQYPGTQRERQLYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQ--GTGLGMAIT 670

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ +++ GG++ I +     T    R+P
Sbjct: 671 KNIVDMMGGNIEIQTEQGKGTEFIVRLP 698


>gi|119485363|ref|ZP_01619691.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119457119|gb|EAW38245.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 402

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 117/230 (50%), Gaps = 2/230 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + +  +N  L +A  +K+ F+  +S+ELR+P+  I+GF+ LL       L  +Q   
Sbjct: 155 RQRKQIERQNRKLAEASRLKSQFLATMSHELRTPMNAIMGFSQLLLRQYPDPLVPQQLDM 214

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  ++  LL ++N++LD + ++AG  +L  +   L   +    Q + +   E  + +
Sbjct: 215 VQRIFNNAQHLLTMLNEVLDFSKIEAGHFQLEPTEFNLAQFVELTTQELRSLAVEKQLTL 274

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +V  + +    + D+  + Q+   ++SNA+ F+  G   I    + N   I +VK+ G  
Sbjct: 275 EVNINLEEPMIINDQNSIRQVLVNLISNAIKFTDSGGVWINVQEQANDQLIIAVKDTGVG 334

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I  D  + +F  F  ++  +  +  G GLGL+IV+S + L  G V++ S 
Sbjct: 335 IASDHLQEIFEAFRQINQTNTRKHYGTGLGLAIVDSLVKLMHGQVTVESQ 384


>gi|309778817|ref|ZP_07673590.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
 gi|308922525|gb|EFP68149.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
          Length = 683

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL          K+   +E I
Sbjct: 289 AESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRG--IEAI 346

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+   ++L++D+LD++ + +G + L    + L D+L   +++I     + NI I    
Sbjct: 347 ERSARTQVHLIDDLLDMSAILSGKVPLEVGPVDLADVLERARETIEPMARQKNITIDT-E 405

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +     D  RL Q+F  +L+NA+ F+ +G  + L         + +V++ G  I   
Sbjct: 406 FLPVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPSPEGVVATVRDTGIGIEPA 465

Query: 734 MCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGVTTINCR 787
               +F+RF    +SN  R    G+GLGL+I +  + LH G ++ +SS  D G TT+   
Sbjct: 466 FLPHIFDRFQQADLSNTRR--HGGLGLGLAIAKQLVELHHGRITAASSGADRG-TTMAVS 522

Query: 788 IP 789
           +P
Sbjct: 523 LP 524


>gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1838

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 1333 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADENLSPKQVEFA 1392

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1393 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1452

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1453 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGTDVPPAIREQLLEA 1512

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  +GD I FSV + G  I       +F  F        R+  G GLGLSI      
Sbjct: 1513 GSLREADGDLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1572

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1573 LLGGEIHAASEPGRGSTFTLYLP 1595


>gi|330901046|gb|EGH32465.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 1003

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   LG     N    +
Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRR 584

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+  ++ +  LL E    +     E NI 
Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLSLSVTSLLEEACSLLVMLTTEKNIE 644

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  + +F V ++G 
Sbjct: 645 LNCTAAQGL-VVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGI 703

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 704 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 762

Query: 789 P 789
           P
Sbjct: 763 P 763


>gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1311

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 8/244 (3%)

Query: 540 LTFVNVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           L       +V++ RA  E   + EAL K D+ K +F  ++S+E R+PLT ++G  +    
Sbjct: 322 LVGAQAATAVQSARAFEEEKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQ 381

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L  +Q      +  +   LL LVN +LD + ++AG +K  Y    L+    ++  
Sbjct: 382 DTGEPLPPRQRDRQLMVHRNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLAS 441

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
           +  + M +  + ++V           DR+   ++   +LSNA  F+  G   V L+A  D
Sbjct: 442 AFRSLMEKAGLSLQVDCPWLAAPVYVDREMYEKVVLNLLSNAFKFTFVGGVRVSLRAEAD 501

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               + +V ++G+ IPE     VF RF  V  A      G G+GL++++  + LHGG +S
Sbjct: 502 RA--VLTVADSGTGIPEAELPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLS 559

Query: 774 ISSS 777
           + S+
Sbjct: 560 VESA 563



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            V+VT+ V A R      E L+ AD+ K+ F+  +++ELR+P+  I     +L+ S+    
Sbjct: 888  VDVTEQVLARRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALSMLERSE--GD 945

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +K +++ E        L+ LV+D+LD++ +  G M+L   T+   DL   V+ ++A   
Sbjct: 946  TAKLARHRETARRQMGNLVRLVDDLLDVSRITRGKMELRKETV---DLAVLVQNALAVTR 1002

Query: 663  HENNIRIKVISDGKL-GSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NG 717
                 R   +S   + G F   AD  RL Q+   +L+NA  ++  G  + +  +R+  NG
Sbjct: 1003 PLIEARGHTLSVALIPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSLSREGLNG 1062

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                +  VK+ G  IP DM   VF  FV  A    R   G+GLGL++V+  + +HGGH  
Sbjct: 1063 TRQAVLRVKDTGRGIPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTLVKRLVEMHGGHAE 1122

Query: 774  ISSSDEGV-TTINCRIP 789
              S   G  +    R+P
Sbjct: 1123 AFSQGPGQGSEFTVRLP 1139


>gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
 gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
          Length = 545

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++++K+    ++  I   S  
Sbjct: 312 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMDNKKFCEHFLHIILKESER 368

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+LDL+ ++    +LN  T+ +  +L ++   +  K  E  I ++V +  K  S
Sbjct: 369 MQGLIEDLLDLSKIEQQGFRLNMGTVDMKGILEDIHMVLDNKAGEKEISLQV-NGLKRVS 427

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  +++NA+ ++  G  V ++   D  +    V + G  I ++    +F
Sbjct: 428 VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELLEDKYNAYIKVSDTGIGISKEEIPRIF 487

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     TT    +P
Sbjct: 488 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|218129056|ref|ZP_03457860.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697]
 gi|217988691|gb|EEC55010.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697]
          Length = 1458

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            ++  E+K  F  +VS+ELR+PLT I G    LKT    +L+ K  +YVE +  ++  +L 
Sbjct: 930  QRLSELKIRFFTNVSHELRTPLTLIQGPIQELKTE---ALSVKGKKYVELMEKNTLHMLK 986

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   L +LL   ++       E  I ++   + +      
Sbjct: 987  LVNQILDFRKIQNGKMRLHVSCFNLTELLAFFEKEFMIMAEEKAINLQFCPEVEELMVWG 1046

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D++RL  +   +LSNA  F+S G ++ I+    ++G   F  V++ G  IP++    +F 
Sbjct: 1047 DKERLGTVVRNLLSNAFKFTSSGGSIRIVSGLAEDGKHCFIRVEDTGVGIPQNKLTEIFG 1106

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            RF    NA     +G G+GL++ +  + LH G +  ++  +G
Sbjct: 1107 RFSQADNAKGAYYQGTGIGLALSKEIVELHHGEIFAANGKQG 1148


>gi|295083823|emb|CBK65346.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 547

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 127/241 (52%), Gaps = 11/241 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL    
Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLL---- 338

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           + S + K+ Q YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ ++
Sbjct: 339 IESDDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRN 398

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
              K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  ++  +   ++
Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAES 457

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  F+V + G  I  D    VF+RFV  N+     +G GLGLSI  S I   GG +   
Sbjct: 458 NEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF---SKGTGLGLSICRSIIKHLGGTIGAE 514

Query: 776 S 776
           S
Sbjct: 515 S 515


>gi|323525402|ref|YP_004227555.1| Osmosensitive K channel His kinase sensor [Burkholderia sp.
           CCGE1001]
 gi|323382404|gb|ADX54495.1| Osmosensitive K channel His kinase sensor [Burkholderia sp.
           CCGE1001]
          Length = 955

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 117/215 (54%), Gaps = 7/215 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLN 622
           +++ ++NS +  +S++LR+PLT I+GF+ +L  S+  S ++++  + VE I   +  +  
Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSREQSGDTRRDDELVEAIHEEALRMTG 735

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +V ++LD+A + AG ++LN    +L + +    ++    +  + +++ + +D  L     
Sbjct: 736 IVTNLLDMARLQAGSLQLNRQWTLLEETVGAALRACRRVLAGHPVQVDLAADLPLLHL-- 793

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FI-FSVKNNGSSIPEDMCKSV 738
           D   + ++FS +  NA  +++ G+ + + A R + D   F+  +V +NG  +P  M   V
Sbjct: 794 DAVLMERLFSNLFENAAKYTAPGTPITIGAQRFDADGKSFVRVTVDDNGPGLPAGMETRV 853

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           F +F        + G+GLGL+I  + +  HGG + 
Sbjct: 854 FEKFTRGEKESAKPGIGLGLAICRAIVEAHGGSIG 888


>gi|261211475|ref|ZP_05925763.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC341]
 gi|260839430|gb|EEX66056.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC341]
          Length = 782

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725
            +     L S V  D  RL Q+   ++SNAM F+  G  V+  +A     + D    V++
Sbjct: 381 DLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKDGGVVMTVSAECDEQHADITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTMRVP 509


>gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1153

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 17/246 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
            V+ T+    E A  EK  A+  A+E K+ FV ++S+E+R+P+  IIG + L L+T    
Sbjct: 362 LVDTTERKFREIAEREKQAAV-MANETKSLFVANMSHEIRTPMNAIIGLSSLALRTD--- 417

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L S+Q  Y+  I  S+  LL ++NDILDL+ ++AG + +      L D LN + + ++ 
Sbjct: 418 -LTSRQRDYLTKIEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSV 476

Query: 661 KMHENNIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
           K  E  + + +   GK      + D  RL Q+   +  NA+ F+ +G  +I ++  R+  
Sbjct: 477 KADEKGLDV-IFDIGKDVPTGLIGDPTRLNQVLLNLTDNAVKFTEQGQVIIKVRREREAA 535

Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           D       FSV + G  +       +F  F        R+  G GLGL+I +  ++L GG
Sbjct: 536 DVQGSTLRFSVIDTGIGMRAQQAPYLFQSFTQADASITRKHGGTGLGLTISKHIVDLMGG 595

Query: 771 HVSISS 776
            +S+SS
Sbjct: 596 EISVSS 601


>gi|156467289|gb|ABU68266.1| putative ethylene receptor [Prunus salicina]
          Length = 741

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L  +T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709
               + + ++ + + +D  + + V D +RL+QI   +  NA+ FS +GS  I        
Sbjct: 432 PVASVKKLSVSLNLAADLPVQA-VGDEKRLMQIVLNVAGNAVKFSKEGSISITAFVAKSE 490

Query: 710 ----------LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
                          DN  ++   VK++GS I P+D+ K +F +F        R   G G
Sbjct: 491 SLRDFRSPEFFPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQSLATRNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGPG 574


>gi|156741626|ref|YP_001431755.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232954|gb|ABU57737.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 906

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 22/236 (9%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++AD +K  F+  VS+ELR+PL  IIGF+ ++     G +   Q + ++ I+ +   LL+
Sbjct: 624 QEADRLKGQFLAAVSHELRTPLNAIIGFSTVMLDEIDGPITPLQREDLKIINRNGRFLLH 683

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++++LDLA ++AG + L  + + +  L+ EV +++   +H   I + ++   +L     
Sbjct: 684 LIDELLDLARIEAGKIDLELAPLDMRALIVEVTETVQGLLHNRQIALNLLLPERLPYACG 743

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN-------GDFI------------ 720
           D  R+ Q+   +LSNA+ F+ +GS  +     AA +N       G  I            
Sbjct: 744 DAARIRQVLLNLLSNAVKFTPQGSITVSARCVAAPENHPGATGSGAVIVRNGQRLHPYIA 803

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            SV++ G  I  +    +F  F       ++ G GLGL+I    I  HGG + + S
Sbjct: 804 VSVRDTGIGIAAEDLTRIFEAFNQVRSGNRQHGSGLGLAISRRLIEAHGGRIWVES 859


>gi|42524989|ref|NP_970369.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39577200|emb|CAE81023.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 377

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 134/254 (52%), Gaps = 15/254 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N+  + + V++T+    E  L    + L++ ++    FV  VS++L+SPL     F + +
Sbjct: 113 NSYAIASIVDITERKIIETRLKHAYDELQQKNQEMEQFVYTVSHDLKSPLVTSSSFIEFI 172

Query: 595 KTS-KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           K   K G++       ++ +  +   +  L+ND+L L+   AG M+LN S + +ND++NE
Sbjct: 173 KEDIKSGNMEDVHDS-IDRLEKAHKRMQELINDLLQLSR--AGRMELNLSDVSMNDIINE 229

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSKGSTVILK 711
           + ++ + ++ + NI +++ +D  L   + DR+RL Q+   +++NA+ +  SS    + + 
Sbjct: 230 ILENFSDRLKDRNIEVQLPTD--LPKVIGDRRRLYQVLENLVTNALKYGTSSPHPQIQIL 287

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
                 + +  VK+NG  I     + +F  F  + N+    + G G+GL+IV+  + LHG
Sbjct: 288 TKDAPTEMLVGVKDNGPGIAPAYHRKIFGLFQRLDNS----QEGTGVGLAIVQRIMQLHG 343

Query: 770 GHVSISSSD-EGVT 782
           G   + S + EG T
Sbjct: 344 GRTWVESRENEGAT 357


>gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22]
 gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22]
          Length = 1793

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ 
Sbjct: 1311 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAESNLTPKQVEFA 1370

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1371 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1430

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1431 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPVAIKEQLLEA 1490

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1491 GSLRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1550

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +   S     +T    +P
Sbjct: 1551 LLGGEIHAQSEPGRGSTFTLYLP 1573


>gi|170745073|ref|YP_001766530.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658674|gb|ACB27728.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 589

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 8/221 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+PL  I+GF DLL+     +L   Q + V+ +     +L  +VNDIL
Sbjct: 205 KSDFLATMSHEVRTPLNAIVGFGDLLRDDP--TLTPSQQRCVDQMRVGCEVLTTVVNDIL 262

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRL 687
           D A ++A  + L  +      L+ E    +A       + ++  SD G     + D+ RL
Sbjct: 263 DYARIEADGVALEAAPFSPRALVEETVALVAGTAERKGLDLRWDSDAGTDQPLIGDKTRL 322

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVS 744
            Q+   +++NA+ F+ +GS  +      + D +    +V++ G  IP D    +F RF  
Sbjct: 323 RQVLLNLVNNAVKFTQRGSVTVALTQTPSPDGVALRVAVRDTGIGIPVDAQARLFTRFAQ 382

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
                 RR  G GLGL+I +  I   GG + + S D   +T
Sbjct: 383 ADSSTTRRFGGTGLGLAIAKGLIETMGGTMGLDSRDGAGST 423


>gi|45657401|ref|YP_001487.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600640|gb|AAS70124.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 731

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 8/239 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           + V  S R E  L  + E   KA++ K+ F+ ++S+ELR+PL +IIGF+ L++       
Sbjct: 318 LEVLVSQRTEE-LNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQ---FPEG 373

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++++Y++ I  S   LLN++NDILDL+ ++A  + LN S   L +L++   + I  + 
Sbjct: 374 MERENRYLDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEA 433

Query: 663 HENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
               + +      K  +F   AD +R+ Q+   +L NA+ F+     +++   +   +F 
Sbjct: 434 ITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQ 493

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +V+++G  IP +    +F  F  V    R    G GLGL IV+  +  H G + + S+
Sbjct: 494 LAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESA 552


>gi|78047771|ref|YP_363946.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036201|emb|CAJ23892.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1137

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N  + 
Sbjct: 731 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRG 787

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I  S+     +++D+LD++ + +G ++L      +  L+  V + +        I
Sbjct: 788 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPTALARKI 845

Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +++ +  DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++
Sbjct: 846 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQD 904

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            G  I  D    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 905 TGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 961


>gi|320585939|gb|EFW98618.1| sensor histidine kinase response [Grosmannia clavigera kw1407]
          Length = 2110

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 115/218 (52%), Gaps = 12/218 (5%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A + K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S++ LL
Sbjct: 1416 LKEAMDSKTRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQNSASSLL 1472

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL++       L+ +V + ++T      + +  I +  +  +V
Sbjct: 1473 MIINDILDLSKVDAGMMKLSFEWFHTRSLIEDVNELVSTMAIGKGLELNYIVEADVPGWV 1532

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFI--FSVKNNGSSIPEDM 734
              DR R+ Q+   ++ NA+ F+++G       +++ + +    +  FSV + G    ++ 
Sbjct: 1533 KGDRVRMRQVLLNVIGNAIKFTARGEVFSCCRVVRPSPEPDRIVLEFSVTDTGQGFTKEE 1592

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
               +F  F  +  +   Q  G GLGL I    + LHGG
Sbjct: 1593 ADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1630


>gi|228915828|ref|ZP_04079404.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843809|gb|EEM88882.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 448

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I I+   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|218438439|ref|YP_002376768.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171167|gb|ACK69900.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 585

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++IK+ F+  +S+ELR+PLT I+G++ LLK   +   N K  + +E I  ++ +   LV+
Sbjct: 212 NQIKDEFLMMLSHELRTPLTAILGWSQLLKKGLITQKN-KVDKALETIERNAKLESKLVD 270

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD++ + A  + L    I L  ++     SI        I IK +          D+Q
Sbjct: 271 DLLDVSRILANKLILKKEPIDLEFIIKLTLDSILLTAQAKEITIKTLIQSPNLKVWGDKQ 330

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q+F  +LSNA+ F+ +G  + +   +DN      + + G  I  ++   VF RF   
Sbjct: 331 RLQQVFWHLLSNAIKFTGEGGVITITLTQDNERAKIIIHDTGQGIKPELLPFVFKRFWQA 390

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
               QR   G+G+GLSI    + LH G +   S  E
Sbjct: 391 DSSSQRIAGGLGIGLSIAHRLVELHNGQIQAESLGE 426


>gi|158335032|ref|YP_001516204.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158305273|gb|ABW26890.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1514

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 120/243 (49%), Gaps = 13/243 (5%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +  EA   A + K+ F+ H+S+ELR+PL  I+G+ ++++      L   Q++++  I  S
Sbjct: 851  QSKEAADAASQAKSDFLAHMSHELRTPLNAILGYVEIMQRDP--QLGETQTEHLGIIGRS 908

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL+L+ND+L+++ ++AG + L   +  L  LL+ ++  +  K     +++       
Sbjct: 909  GEHLLSLINDVLEMSRIEAGQLALTQVSFDLYRLLDSLQDMLEAKAKLQGLQLYFERSAT 968

Query: 677  LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG------DFIFSVKNNGS 728
            +  FV AD  +L Q+   +L N ++++ KG  ++ +     +G         F+V + G 
Sbjct: 969  VPQFVFADEGKLRQVLINLLGNGLNYTEKGQVLLQVDTPEQSGQPGRACQLTFAVMDTGP 1028

Query: 729  SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I       +F  F    + +R Q  G GLGL I   F+ L GG + + S+    +T   
Sbjct: 1029 GIKASDVDQLFEAFTQTDSGYRAQ-EGTGLGLPISRRFVQLMGGDIEVDSTVGQGSTFRF 1087

Query: 787  RIP 789
             IP
Sbjct: 1088 TIP 1090


>gi|108758870|ref|YP_628999.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|58803053|gb|AAW82652.1| RodK [Myxococcus xanthus DK 1622]
 gi|108462750|gb|ABF87935.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 981

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 3/225 (1%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ + S+E+R+PL  IIG+ DLL   +   L +   + +  +  ++  LL L+NDI
Sbjct: 350 LKSEFLANFSHEIRTPLNGIIGYCDLLMREEGQRLTAHGRRDLNVVKTNAKTLLALINDI 409

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ +++G +++    + + +L  E   ++   +   ++ +    D       +D  +L
Sbjct: 410 LDLSKIESGRVEVVTEQVDVQELAEECLATVKEYLKGKDVALTTNIDPSARMLRSDALKL 469

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            QI   +LSNA  F+  G  V L       + I +V++ G  IP D    +F +F  V  
Sbjct: 470 RQIMLNLLSNAAKFTDAGE-VALSLVPAGSEVIMTVEDTGVGIPSDELPFIFEKFRQVDG 528

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +   +  G GLGL+IV     + GG+V+++S+    TT   R+P+
Sbjct: 529 STTRKVGGTGLGLAIVRELSRVLGGNVTVTSTLGRGTTFTVRLPT 573


>gi|16126740|ref|NP_421304.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235523|ref|YP_002517960.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424056|gb|AAK24472.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220964696|gb|ACL96052.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 637

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 131/254 (51%), Gaps = 7/254 (2%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           YS++   +   ++T  ++T+  R E  + +  +    A   K+ F+ ++++ELR+PLT I
Sbjct: 225 YSLLGDGSGILLVTSRDITERKRLELDIAKALQMAEAASAAKSDFLANMTHELRTPLTAI 284

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF ++L+ S+  +LN   ++ V +I  +S  LL++VND+LD + ++AG ++L+ +    
Sbjct: 285 IGFAEVLRRSR--NLNKTAARQVGHILDASNTLLSVVNDVLDFSRLEAGGLELDPAPFDP 342

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS- 706
             + +     +A +     + ++V +   L     D  RL Q+    LSNA+ F+S G+ 
Sbjct: 343 AAMASSCAGLVAERAEAKGLAVEVRAPRGLKPMNLDGPRLSQVLLNFLSNAVKFTSHGAI 402

Query: 707 TVILKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           TV L+   D    +    V + G  I  +  +++F+RF        RR  G GLGL+I  
Sbjct: 403 TVALRQTIDGDQAVLRGEVTDTGIGIAPEHRENIFDRFSQADAAVSRRFGGTGLGLAISR 462

Query: 763 SFINLHGGHVSISS 776
             I    G + + S
Sbjct: 463 RIIERMDGRIGVDS 476


>gi|15602178|ref|NP_245250.1| hypothetical protein PM0313 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720549|gb|AAK02397.1| ArcB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 618

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 5/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V++ V AE+ L+   + + K    K   +  +S+ELR+PL  IIG + +L   KL     
Sbjct: 98  VSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKL---TE 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I  S+  L ++ +DI+DL  +DA  ++LN   + LN  LN++         +
Sbjct: 155 TQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQ 214

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +  ++++D  L + F+ D  RL QI   ++ NA+ F+ +G   +           FSV
Sbjct: 215 KKLAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSV 274

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  IP +    VF  +      G +  G G+GL+I ++   L GG +  +S     +
Sbjct: 275 SDTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGS 334

Query: 783 TINCRIPSKE 792
                +P KE
Sbjct: 335 CFTLMLPVKE 344


>gi|255533739|ref|YP_003094111.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346723|gb|ACU06049.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 797

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 9/244 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD  R ER + E  E   +  E K  F+  +S+E+R+PL  +IG T LL  +      + 
Sbjct: 407 TDKKRVEREMLEAKEQALQLSEAKEMFLSVMSHEIRTPLNAVIGMTHLLIEN---DPRAS 463

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q + +  +  S   LLN++NDILD   ++ G ++L      +  L  ++  S+     + 
Sbjct: 464 QIEDLNILKFSGENLLNIINDILDFTKMETGNLQLEALPFSMKALTTDIITSLYVGATKK 523

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIF 721
              ++++ D ++     D+ RL QI   +L NA+ F+ +G  +    +L+    N    F
Sbjct: 524 GNILELLYDDQIPHLSGDKTRLYQILMNLLGNAIKFTDQGKIILSVKLLEQDAVNASLYF 583

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            + + G  IPED    +F  F        R+  G GLGL+I +  + L+   + + S + 
Sbjct: 584 EISDTGIGIPEDKLSYIFETFTQAKTDISRKYGGTGLGLAITKKLLELYNSEIQVKSREG 643

Query: 780 GVTT 783
             TT
Sbjct: 644 AGTT 647


>gi|158339431|ref|YP_001520608.1| two-component hybrid sensory histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309672|gb|ABW31289.1| two-component hybrid sensory histidine kinase, putative
           [Acaryochloris marina MBIC11017]
          Length = 691

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 30/254 (11%)

Query: 550 RAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGS 601
           R ++ L  +N+AL        KA++ K+ F+ ++S+ELR+PL  ++G+T LL +  +L S
Sbjct: 194 RQQQELIAQNQALTIAKQQAVKANQAKSVFLGNMSHELRTPLNAVLGYTQLLAREPQLQS 253

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +    +E I+     LL L+ND+LDL+ +D+G + LN  T   ++LL  +K    TK
Sbjct: 254 FTKE----LETINRCGKHLLALINDVLDLSRIDSGQVVLNIDTFNFHELLKTLKDIWTTK 309

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--------STVILKA 712
                +  ++     L  +V  D  +L Q+   +LSNA+ F+ +G        +TV+ K 
Sbjct: 310 AQHKGLDYQLEWGSDLPHYVRTDEGKLRQVLMNLLSNAIKFTEQGHITFRIHQTTVVSKL 369

Query: 713 ARD-------NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVES 763
             +       +    F V+++G  I     +++F+ F+    A      G GLGL+I   
Sbjct: 370 NEELHLPLTPHYWLNFEVRDSGPGISVSELENIFHPFIQGEQARSVVDEGTGLGLAISHQ 429

Query: 764 FINLHGGHVSISSS 777
           F++L GG++S+SSS
Sbjct: 430 FVSLMGGNLSVSSS 443


>gi|317488286|ref|ZP_07946852.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325830707|ref|ZP_08164091.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|316912626|gb|EFV34169.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325487114|gb|EGC89557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 762

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 20/254 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAERA    +E  R+A   K+ F+  +S+E+R+P+  I+G T +   +       K    
Sbjct: 350 RAERA----SEEARRASLAKSEFLSRMSHEIRTPMNGIMGMTAIALENA--HDEEKARAC 403

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +S  L+ L+NDILD++ +++G + +   T      +  +     T+  E  IR 
Sbjct: 404 LEKIDVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQGIRY 463

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----------AARDNG 717
           K    G L S  V D  RL QI   ++ NA  F+ +  +V L+           AA D+ 
Sbjct: 464 KTEEVGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAHDDA 523

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
            ++ FSV + G  I  +  + +F+ F        RR G GLGL+I + F  + GG +S+S
Sbjct: 524 IWLRFSVTDTGCGIKPENRERIFSSFEQGDESSCRRGGTGLGLAITKRFTEMMGGRISLS 583

Query: 776 SSDEGVTTINCRIP 789
           S     +T    +P
Sbjct: 584 SEVGKGSTFTVDVP 597


>gi|221369237|ref|YP_002520333.1| Sensor protein [Rhodobacter sphaeroides KD131]
 gi|221162289|gb|ACM03260.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 699

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 123/238 (51%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + L  A+  K++F+  +S+ELR+PLT IIG+ +LL+TS+   L+ ++ Q V+ IS
Sbjct: 452 LATMGDKLDAANRAKSNFLSSMSHELRTPLTAIIGYAELLETSEGRKLDGERLQQVQAIS 511

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   ++ LV+ +L+L+ ++   ++L  S++ L  L+ E             + +++++ 
Sbjct: 512 TAGWNMVKLVDAVLELSRLEHRDLRLATSSMDLMPLIEEALSRARPDAERMRVTLRILAP 571

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
              L S V+D   L +I  ++LSNA+ ++     V +    +  D +  S+++ G  IP 
Sbjct: 572 KAPLPSVVSDPALLRRILDQLLSNAVKYNLPDGLVEISFGLEAPDTVDLSIRDTGPGIPT 631

Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D    +F  F    H  G   G G+GL+I +    + G  +S+ S+    T    RIP
Sbjct: 632 DRQAEIFQAFQRLGHENGAISGAGIGLTIAQRLAEVSGCRLSLESTPGEGTIFLLRIP 689


>gi|150249043|gb|ABR67685.1| ethylene receptor [Glycine max]
          Length = 722

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 138/269 (51%), Gaps = 38/269 (14%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  +I  + LL+ +  
Sbjct: 296 ESMRARDQLIEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQET-- 353

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
             L ++Q   VE I  SS +L  L+ND+LDL+ ++ G ++L  +T  L+ L  EV   I 
Sbjct: 354 -DLTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEAATFNLHSLFREVLNLIK 412

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709
               + + ++   V SD  + + + D +RL+Q    ++ NA+ FS +G   I        
Sbjct: 413 PVASVKKLSLTSHVASDLPMYA-IGDEKRLMQTILNVVGNAVKFSKEGCISITAFVAKPE 471

Query: 710 ----------LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
                     L    DN  ++   VK++GS I P+D+ K +F +F  N     R   G G
Sbjct: 472 SFRDARIPDFLPVPSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQNQSLTTRNPAGSG 530

Query: 756 LGLSIVESFINLHGGHVSISSS--DEGVT 782
           LGL+I   F+NL  GH+ + S   D+G T
Sbjct: 531 LGLAICRRFVNLMEGHIWVESEGIDKGCT 559


>gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1627

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 46/283 (16%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +T + +    L    E    A++ K+ F+ ++S+ELR+PL  I+GFT L+      +L+ 
Sbjct: 1105 LTKTQQQAEELQLAKETADAANKAKSEFLANMSHELRTPLNAILGFTQLMHNDP--ALSG 1162

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +  QY+  IS +   LLNL+NDIL+++ ++AG + LN +   L+ LLN +++ +  K   
Sbjct: 1163 EYQQYIHIISQAGEYLLNLINDILEMSKIEAGQLTLNENCFDLHCLLNSLEEMLQLKAKL 1222

Query: 665  NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG-------STVILKAARDN 716
              ++++   D  +  F+A D ++L Q+   +L+NA+ F+  G       S  +LK    +
Sbjct: 1223 KGLQLQFDCDLNVPQFIATDDKKLRQVLINLLNNAIKFTESGYVTLRVFSQPLLKHGSFS 1282

Query: 717  GD----------------------------------FIFSVKNNGSSIPEDMCKSVFNRF 742
            GD                                    F V++ G  I       +F  F
Sbjct: 1283 GDNQSELVKQLTPILPASESLSEAPTNHPNHLELIPIYFEVEDTGLGIAPHELDRLFEAF 1342

Query: 743  V-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
              + A      G GLGL I + F+ L GG + +SS   GV +I
Sbjct: 1343 SQTEAGFKSSEGTGLGLPISQRFVQLMGGEIKVSSQP-GVGSI 1384


>gi|312972515|ref|ZP_07786689.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|310334892|gb|EFQ01097.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|332754418|gb|EGJ84784.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2747-71]
          Length = 595

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 81  RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 137

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 138 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 197

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 198 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 256

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 257 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 316

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 317 TLTIHAPS 324


>gi|322436995|ref|YP_004219207.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
 gi|321164722|gb|ADW70427.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
          Length = 613

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 17/248 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++  A++ A E+K  F+  V++ELR+PL +I+  + L+ +   GSL+++Q + V +I 
Sbjct: 212 LEDRARAVQHASELKTRFLSGVTHELRTPLNSIVSLSRLMLSHSDGSLSTEQEKQVNFIL 271

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL---LNEVKQSIATKMHENNIRIKV 671
            S+  +  LVND+LDLA V+AG    N +   + DL   L  + + +AT     N  +K+
Sbjct: 272 RSAQNMTELVNDLLDLARVEAGKAISNLTYFTVADLYAGLRGMFRPLAT-----NPSVKL 326

Query: 672 ISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFI-FSVKNNG 727
           + D   +      D  +L QI    +SNA+ F+  G+  +    R+   D++ F+V + G
Sbjct: 327 LFDIPSEPLRLHTDEGKLAQILRNFISNALKFTEHGTVTVSARPREGSPDWVTFTVVDTG 386

Query: 728 SSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             I  +  + V   +     V  A  G+++G GLGL +  SF  L GG +  +S     +
Sbjct: 387 IGIAPEHHEIVMQEWGQVEHVQQAAHGKQKGSGLGLPLSRSFAELLGGRIHFTSEPGQGS 446

Query: 783 TINCRIPS 790
           T    +P+
Sbjct: 447 TFEVSLPA 454


>gi|153869800|ref|ZP_01999325.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073728|gb|EDN70669.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 652

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 144/285 (50%), Gaps = 9/285 (3%)

Query: 510 ERKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           ERK  + T ELLS + +L   II     +  LT   V +  + ++AL E  EA   A+  
Sbjct: 82  ERKVEERTTELLSANKLLTQEIIERKQIEIALT-QEVIERQKVQQALKEAKEAAEAANVA 140

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  IIG++++L          +    +  I  +   LL L+ND+L
Sbjct: 141 KSQFLANMSHELRTPLNAIIGYSEMLAEEAEDLEQEEFIPDLHKIKTAGNHLLGLINDVL 200

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQR 686
           DL+ ++AG M+L    I LN L++EV  +    + +  NN  IK     +LG    D  +
Sbjct: 201 DLSKIEAGKMELLIEPIDLNILMDEVISTTQPLIEKKANNFDIK--RSQQLGEIQTDITK 258

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   ++SNA  F+ KG T+ L    +     F V +NG  + E+    +F  F    
Sbjct: 259 LRQMLLNLISNAAKFTEKG-TISLNIQSEADLIKFCVTDNGIGMTEEQQAKLFQPFTQAD 317

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               RR  G GLGL+I + F  + GG +S+++     +T +  +P
Sbjct: 318 ASTTRRFGGTGLGLTITKQFAEMMGGSISVTTEFGKGSTFSISLP 362


>gi|219849075|ref|YP_002463508.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543334|gb|ACL25072.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 482

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 9/215 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGS---LNSKQSQYVEYISASSTILLNLV 624
           K++F+  +S+ELR+PL  IIGF T +++  ++     ++ +  Q +  I  S   LL L+
Sbjct: 245 KSNFMATMSHELRTPLNIIIGFSTAMIEHPEMYGDVKIDEQVLQDIAEIRRSGQHLLGLI 304

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDLA ++AG ++LN + + L  LL+E  ++    + +  I+++      L + +AD 
Sbjct: 305 NDILDLAKIEAGKLELNRTNLALPPLLDETIRTAQALIGDRPIQLRREYHDSLPTVLADE 364

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF- 742
            R+ Q+   ++SNA  F+  G   +   AR   D  +  V++ G  I     + +F +F 
Sbjct: 365 VRIRQVLLNLVSNACKFTHMGEIAV--GARAETDQVVLWVRDTGIGIAPADQERIFQQFE 422

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V NA      G GLGLSI    I LHGG + + S
Sbjct: 423 QVENADTRHHAGTGLGLSICRWLIELHGGRMWLES 457


>gi|254411811|ref|ZP_05025587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181533|gb|EDX76521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 562

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 7/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  + +  E  ++  E+K+ F+   S+E R PLT +   T+LL+         K+ ++  
Sbjct: 261 EAEMLQALEREKELTELKSRFISMTSHEFRVPLTAVYSSTELLEQYSHNWAEEKKLKHFN 320

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT---KMHENNIR 668
            I  S   +  L++D+L +   ++G ++ N   + LN L  ++ + I     K HE    
Sbjct: 321 RIKDSVNRMTTLLDDVLIVNKAESGKLEFNPQPLNLNQLCQDLVEDIELGIGKQHE---- 376

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I  I+ G+      D + L  I + +L+NA+ +S  GSTV         + IF +K+ G 
Sbjct: 377 ISWINSGRASKACMDEKLLRHILTNLLTNAVKYSPLGSTVQFNCHCREQEVIFEIKDQGI 436

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +  K +F  F    + G  +G GLGLSIV+  ++LHGG +++ S     TT    +
Sbjct: 437 GIPPEDQKRLFESFHRAKNVGNIQGTGLGLSIVKKSVDLHGGKLAVHSEVGVGTTFKVTL 496

Query: 789 P 789
           P
Sbjct: 497 P 497


>gi|21242622|ref|NP_642204.1| RpfC protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108086|gb|AAM36740.1| RpfC protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 725

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 21/250 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LT      R+A E K+ F+ ++S+E R+PL  + G T++L T++   ++S+Q + ++ 
Sbjct: 174 RQLTRATVEARRASEAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---MDSEQRECLKT 230

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----KQSIATKMHENNI 667
           I AS+  LL LV ++LD++ ++AG +++N S   L+D L  +      QS A  +   N 
Sbjct: 231 IQASTRSLLALVEEVLDISAIEAGKLRINTSDFALHDTLQAIGLILEPQSRAKAL---NY 287

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FS 722
           ++ V +D        D   L QI   ++ NA+ F+ +GS  +  AA      +     F 
Sbjct: 288 QVSVAADVP-ARLHGDAGHLRQILLNLVGNAVKFTDQGSVQLKVAATGTNGRVGVLLRFE 346

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDE 779
           V + G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG +    + E
Sbjct: 347 VIDTGIGVPVDMRPRLFEAF-EQADTGLARRFEGSGLGTTIAKGLVQSMGGAIGFEENPE 405

Query: 780 GVTTINCRIP 789
           G +     +P
Sbjct: 406 GGSQFWFELP 415


>gi|116668684|ref|YP_829617.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
           FB24]
 gi|116608793|gb|ABK01517.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
           FB24]
          Length = 566

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 123/236 (52%), Gaps = 9/236 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ D+ K  F+  V++ELR+PLT+I  + D+++    G +  + S+ ++ I  +S  L 
Sbjct: 328 LRQLDQAKTDFLATVNHELRTPLTSISAYLDMIQDGVGGPVPPEVSRMLDIIVRNSERLR 387

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            L+ D+L ++  D     L+   + L   L  V  ++       ++ I + + DG   + 
Sbjct: 388 RLIEDMLTVSRQDYDGANLHLGPVQLGHTLQIVTVALRPLAELGDVSISLELCDGD-PAI 446

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFI-FSVKNNGSSIPEDMC 735
           +AD  +L Q+F+ ++SNA+ F+ +G  +++    +A  D    +   V++ G  IPE+  
Sbjct: 447 IADEVQLEQVFTNLVSNAIKFTPRGGRIVVSCRFQAMTDGEPGVNVHVRDTGVGIPEEEI 506

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F RF   SNA      G GLGL+I    +  H G++++SS     TTI  ++P
Sbjct: 507 PHLFTRFFRASNATSTAVPGSGLGLAIAHDIVKSHRGYLAVSSELGAGTTITVQLP 562


>gi|301053449|ref|YP_003791660.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375618|gb|ADK04522.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 355

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 133/242 (54%), Gaps = 13/242 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL +   +  QY
Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEECEQY 170

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+ S + +  L+ ++      ++ + ++  
Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 230

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D  L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 231 CMKGDKGL-HVEMDVALMVRVFENVISNSIMYGKDGKEILIQMSKRDMNVEIEIKNWGQC 289

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           IP++    VF +F    +RG++       G G+GL+I +S   LH G +++ S+D E V 
Sbjct: 290 IPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDIAVRSNDKETVF 345

Query: 783 TI 784
           TI
Sbjct: 346 TI 347


>gi|229122768|ref|ZP_04251977.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201]
 gi|228660632|gb|EEL16263.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201]
          Length = 448

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I I+   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1210

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 141/281 (50%), Gaps = 32/281 (11%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++   ++T   +A+ +L +       A++ K+ F+ ++S+ELR+PL  I+GFT ++  S+
Sbjct: 689 VIALRDITKRKQADLSLQQAKADAEAANQAKSMFLANMSHELRTPLNIILGFTQVM--SR 746

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             ++  ++ + ++ I+ S   LL+L+ND+LDL+ ++AG + +  S   L  L+  +++  
Sbjct: 747 DPAITPEEQENLDIINKSGNHLLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQEMF 806

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TVILKA- 712
             K     +++ +     +  ++ AD  +L Q+   +LSNA+ F+  GS      +LKA 
Sbjct: 807 QHKARAKGLQLHLNIAADVPHYIQADSNKLRQVLINLLSNAIKFTQNGSINLRVALLKAE 866

Query: 713 ARDNG----DFI-------------------FSVKNNGSSIPEDMCKSVFNRFV-SNAHR 748
             D+G    D I                   F V + G  I      S+F+ F+ ++A +
Sbjct: 867 GNDHGSDAEDMITPPSSQTRHGTSLQASHLHFEVSDTGVGIAPTELGSIFDAFIQTHAGK 926

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               G GLGL+I   F+ L GG + +SS     +T +  IP
Sbjct: 927 VANEGTGLGLAISRKFVQLMGGDIQVSSQLNQGSTFSFEIP 967


>gi|188589804|ref|YP_001921022.1| sensory box histidine kinase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500085|gb|ACD53221.1| sensory box histidine kinase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 371

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 18/239 (7%)

Query: 554 ALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            + +KNE   L++ +E+++ F  ++S+ELR+PL  II    LL+       N  + ++++
Sbjct: 95  VVNQKNEMYKLKEEEEMRSQFFANISHELRTPLNIIISSFQLLRM-----YNYNEEEFLK 149

Query: 612 Y-------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           Y       IS + + +L L+N+I+D+   DAG  K+N+    +  L+  V  SIA     
Sbjct: 150 YYNKYENTISQNCSRMLRLINNIIDVTKFDAGCFKMNFVNCEIVSLVENVTLSIAEYEKA 209

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-- 722
               I   +D +      D + + +    +LSNA+ F+S    + +    +N D   S  
Sbjct: 210 RKRNIIFDTDCEFLEIKCDPENMERAILNLLSNAIKFTSDNGNIFVNIESENNDKYLSIT 269

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +K++G  IP+D  KS+F RFV    + R    G G+GLS+V+  +N H G + +  +++
Sbjct: 270 IKDDGIGIPKDFRKSIFERFVQVDKSFRRNVEGSGIGLSLVKYIVNSHDGEIYLKDNEK 328


>gi|149909590|ref|ZP_01898243.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
 gi|149807294|gb|EDM67247.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
          Length = 903

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 14/235 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ + +  E+  +A+  K+SF+ ++S+E+R+PL  +IG +++L  +K   L   Q  ++ 
Sbjct: 365 EKQIIQAKESAEQANVAKSSFLANMSHEIRTPLNGVIGMSNILSNTK---LTPSQQDHLA 421

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  LL L+NDILD + +++G + +      L +++ +    I       N+   V
Sbjct: 422 IIENSSQTLLILINDILDFSKIESGHLAITNHRCDLREVIYDTVAIITPSAAAKNLDFSV 481

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVK 724
            I+      F+ D  RL Q+   +LSNA+ F+  G      S+ +++ +R   +  FSV 
Sbjct: 482 NIAPELPNEFLLDEHRLRQVLMNLLSNAVKFTDSGQVSLTLSSKVIENSR--SELYFSVA 539

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           + G+ I ED  + +F  F        R+  G GLGL+I    + L GG + + S+
Sbjct: 540 DTGTGIEEDKQQKIFEPFTQEDGSITRQFGGTGLGLAISTQLVELMGGEIGVDST 594


>gi|110805009|ref|YP_688528.1| sensor protein torS [Shigella flexneri 5 str. 8401]
 gi|110614557|gb|ABF03224.1| sensor protein torS [Shigella flexneri 5 str. 8401]
          Length = 816

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   ++ I+ S   LL
Sbjct: 349 LEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLQAITDSGESLL 405

Query: 622 NLVNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLG 678
            ++NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    
Sbjct: 406 TILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPS 465

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           + + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +
Sbjct: 466 ALMGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEI 524

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 525 FQPFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 573


>gi|110596980|ref|ZP_01385270.1| PAS [Chlorobium ferrooxidans DSM 13031]
 gi|110341667|gb|EAT60127.1| PAS [Chlorobium ferrooxidans DSM 13031]
          Length = 999

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 26/255 (10%)

Query: 545 VTDSVRAERALTEKN----EALRKADEI----------KNSFVQHVSYELRSPLTNIIGF 590
           + D+ +A   L E N    E++R  +E+          K+ F+ ++S+E+R+P+  +IG 
Sbjct: 306 IEDANQARNELIETNRKLEESMRLTEEMARNAEAANAAKSQFLANMSHEIRTPMNGVIGM 365

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            DLL  ++L   ++ Q  YVE I+ S   LL ++NDILD + ++A +++L+     L DL
Sbjct: 366 ADLLLETRL---STDQRNYVEIINGSGRNLLKIINDILDFSKIEARMLELDAIDFDLFDL 422

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L E+   +  +  +  + + +I+   L  S   D  R+ QI   ++ NA+ F+ +G  V+
Sbjct: 423 LEEICGVLGLEARDKGLELLLITGFDLPFSLKGDPARIRQILVNLIGNALRFTPEGGEVV 482

Query: 710 LKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           LK         N    F+V++ G  I  D  + +F  F        R+  G GLGLSI  
Sbjct: 483 LKVMVQQQTDRNAVIRFNVRDTGIGISADKLQKIFEPFTQADGSNIRKFGGTGLGLSISN 542

Query: 763 SFI-NLHGGHVSISS 776
             +  + GG + + S
Sbjct: 543 DLVLKMGGGGIHVES 557


>gi|295691356|ref|YP_003595049.1| histidine kinase [Caulobacter segnis ATCC 21756]
 gi|295433259|gb|ADG12431.1| histidine kinase [Caulobacter segnis ATCC 21756]
          Length = 516

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 5/188 (2%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E R+PL  ++G   LL+ +KL    ++Q  YV  +  S   LL+LVND+L  A + A
Sbjct: 21  LSHEFRTPLNGVLGMARLLENTKL---TAEQRSYVTALRESGDHLLSLVNDVLHFARLGA 77

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             ++L+   + +  LL +V + ++ + HE  + I       L    AD  RL QI     
Sbjct: 78  ASIELSLGPVDVESLLRQVAELMSPRAHEKGVEIAWALTAPLPVIHADEGRLRQILLNFA 137

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRG 753
            NA+ F+  G  ++  +A +NG   FSV + G  +  +    +F  FV     H  Q  G
Sbjct: 138 GNAVKFTEAGGVLLSASAGENGRIRFSVADTGPGVAPEARARIFEAFVQTDITHSTQLGG 197

Query: 754 VGLGLSIV 761
            GLGL+IV
Sbjct: 198 AGLGLAIV 205


>gi|237719307|ref|ZP_04549788.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451167|gb|EEO56958.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 533

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 11/241 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL  S 
Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               + K+ Q YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ ++
Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRN 398

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
              K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  ++  +   ++
Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAES 457

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  F+V + G  I  D    VF+RFV  N+     +G GLGLSI  S I   GG +   
Sbjct: 458 NEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIGAE 514

Query: 776 S 776
           S
Sbjct: 515 S 515


>gi|256393336|ref|YP_003114900.1| histidine kinase [Catenulispora acidiphila DSM 44928]
 gi|256359562|gb|ACU73059.1| histidine kinase [Catenulispora acidiphila DSM 44928]
          Length = 592

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 14/241 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LTE+ E +   D  + + V  +++ELRSPLTNI G+   L+ ++ G L       +  + 
Sbjct: 361 LTERREQM---DAQRKAMVADIAHELRSPLTNIRGW---LEVTRDG-LVEPTPDLITSLH 413

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             + +L  +++D+ DLA+ DAG ++++   I   DLL +V  +   +  +  I ++V ++
Sbjct: 414 DEAVVLQRVIDDLQDLASADAGTLRVHPQPIAALDLLQQVALAHRAQAADLGITVEVHAE 473

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
             L  + AD +R+ Q+   ++SNA+  S+ G+ V L  AR   D +  S ++ G  I + 
Sbjct: 474 PGLDVY-ADPERIRQVLGNLVSNAVRHSASGAHVTLT-ARPTADGVELSAQDTGCGIAQA 531

Query: 734 MCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +F+RF   + + + RG    GLGL+I    +  HGG +++ S     TT+  R+P 
Sbjct: 532 DLPYIFDRFW-RSEKSRNRGTGGSGLGLAIARHLVLAHGGTITVESFVGVGTTMTVRLPP 590

Query: 791 K 791
            
Sbjct: 591 P 591


>gi|257059244|ref|YP_003137132.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589410|gb|ACV00297.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1611

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 130/243 (53%), Gaps = 10/243 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++T     E  L +  E    A+  K+ F+ ++S+ELR+PL  I+GFT LL   +  
Sbjct: 1130 THKDITQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLL--GRDT 1187

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            SL++   + ++ I+ S   LL L++DILDL+ ++ G + L  +   L+ LL  V++ ++ 
Sbjct: 1188 SLSAYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSP 1247

Query: 661  KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
            K     I++ +  D  L  ++  D ++L QI   +L+NA+ F+ +G TV L+      D 
Sbjct: 1248 KAESKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQG-TVTLRVNLSKIDQ 1306

Query: 719  ----FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  F V++ G  I  D   ++F  FV + A +   +G GLGL+I +  + L GG + 
Sbjct: 1307 KAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGKKINQGSGLGLAISQKLVQLMGGKIE 1366

Query: 774  ISS 776
            ++S
Sbjct: 1367 VNS 1369


>gi|323492426|ref|ZP_08097574.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546]
 gi|323313213|gb|EGA66329.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546]
          Length = 569

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 134/262 (51%), Gaps = 10/262 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTD 592
           +Q ML    +  ++  +  +T   EA  +A+E + S   FV  +++ELR+PL  ++G  +
Sbjct: 173 SQVMLVGELLCSAISRQMIVTRHQEARARAEESERSTKEFVAMINHELRTPLNGLLGSAE 232

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +   SLN +Q   +  ++ S  +L +++NDILD + ++AG+M+L  S     +L N
Sbjct: 233 LLADT---SLNEEQQTLLSNLAHSGDLLRHIINDILDFSKMNAGMMELIPSQFSWVELSN 289

Query: 653 EVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +      K  E  I   +    +L  +F+ D +R+ QI   ++ NA+ F+++G  V L 
Sbjct: 290 MIDGIFRPKAQEKGIEFTIEQTNQLPAAFIGDFERIGQIVVNLVGNAIKFTAQGE-VKLV 348

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
           A  D      S+ ++G  I  ++   +F  F+      +R   G GLGL+I ++ + L  
Sbjct: 349 AEWDVDCLKMSIIDSGVGISNELHDQLFTPFIQVDRSAKRNFEGTGLGLAICKNLVELML 408

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +S++S     +  N  IP K
Sbjct: 409 GEISLTSELGKGSCFNVTIPLK 430


>gi|270157584|ref|ZP_06186241.1| response regulator TutC [Legionella longbeachae D-4968]
 gi|289164037|ref|YP_003454175.1| sensor histidine kinase [Legionella longbeachae NSW150]
 gi|269989609|gb|EEZ95863.1| response regulator TutC [Legionella longbeachae D-4968]
 gi|288857210|emb|CBJ11031.1| putative sensor histidine kinase [Legionella longbeachae NSW150]
          Length = 806

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 6/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVE 611
           + L E N  L   D++K  F  ++S+ELR+PL  I+G  D LL+   L SL +K+   + 
Sbjct: 177 KQLQEVNSHLALLDQMKTQFFANISHELRTPLMLILGPIDSLLQDKPLSSLQTKK---LR 233

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++ +L   VND+LD+A  DA  +++NY  I    L+ +V       +     ++  
Sbjct: 234 LIKENALLLSKHVNDLLDIAKFDAAKLEINYYDIDFVQLIKKVLSLFEADIEAKEFQVSC 293

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                L   + D +++ ++   +LSN++ F+     + LK  +      FS+++NG  IP
Sbjct: 294 DFPKTLLIQI-DSEKIERVVLNLLSNSIKFNPIHGIINLKLHKKKNYAEFSIEDNGPGIP 352

Query: 732 EDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +++F RF           G GLGL+IV+ F+ LH G +++  S+ G      +IP 
Sbjct: 353 SKFKEAIFERFFQMEESLYHSAGTGLGLAIVKDFVELHKGTINVQKSELGGARFVIQIPL 412

Query: 791 K 791
           K
Sbjct: 413 K 413



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 96/218 (44%), Gaps = 10/218 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++ A++    FV   S++L+SPL  I      ++      L  +  +Y+ ++   +  + 
Sbjct: 574 VKNAEDELERFVYLASHDLKSPLPAIEHLVSWIEEDTENQLTPQSRKYLSFLRKRAYRMS 633

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           NL++ +L  A   AG++     TI  ++L+N V   + +    N+  I    D    S  
Sbjct: 634 NLLDGLLKYA--QAGVIHSKVETINFSELVNNVVHKVDSA---NDFDIHC--DRCNFSIK 686

Query: 682 ADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           A+R  L ++  +++ N++      KG  + +        + F V ++G  I       +F
Sbjct: 687 AERTPLQEVLYELIDNSVKHHHLHKGH-IKVGVIEKKACYEFFVADDGPGIESAYQDRIF 745

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F +   R      G+GLSI +  +  HG ++ + S+
Sbjct: 746 QLFQTLQPRDIFESCGVGLSIAKKIVETHGSNIWVESA 783


>gi|218134830|ref|ZP_03463634.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990215|gb|EEC56226.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
          Length = 473

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608
           R   +L   +  + + D+ +  F+ ++S++ RSPLT+I G+ + +     G++  +  Q 
Sbjct: 226 RLGASLNYMSSEINEMDKFQQKFISNISHDFRSPLTSIKGYLEAMSD---GTIPPELHQK 282

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+  +   +  L  L N++L L  +D   ++LNYS   +ND++    ++      E  I 
Sbjct: 283 YIGIVLFETERLTKLTNNLLTLNDLDPKSVRLNYSDFDINDVIRHTIETFEGVCTEKKIT 342

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            K+    +     AD +++ Q+   ++ NA+ FS   S + +     NG    SVK+NG 
Sbjct: 343 FKLTFSSRQLMVHADMEKIQQVVYNLVDNAVKFSHPDSFIAISTTTKNGRAFISVKDNGI 402

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            IP+D  K ++ RF  ++  RG+ ++G GLGL+IV   I  HG  + + S+ EGV T
Sbjct: 403 GIPKDDLKKIWERFYKTDNSRGRDKKGSGLGLAIVREIIQTHGERIDVIST-EGVGT 458


>gi|218438074|ref|YP_002376403.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170802|gb|ACK69535.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1068

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 127/255 (49%), Gaps = 18/255 (7%)

Query: 536 AQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +T+ T +  ++T+  +AE AL +  EA   A+  K+ F+  +S+ELR+PL  I+GFT +
Sbjct: 570 GKTIFTAIVRDITERKQAEEALKKAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQV 629

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +    L  +    ++ IS S   LL+L+NDIL+++ ++AG    N  +  L  LL+ 
Sbjct: 630 LGRNSY--LTEEDKTNLDIISRSGEHLLDLINDILEMSKIEAGRTTFNEGSFDLYQLLDS 687

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++  +  +     +++       +  F+  D  +L Q+   +L NA+ F+ +G   +   
Sbjct: 688 LENMLRLRAEAKGLQLIFDRVSDVPQFIQTDEGKLRQVLINLLGNAIKFTEQGGVTL--R 745

Query: 713 ARDNG----------DFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIV 761
            +  G            IF +++ G  I  +    +F  F  + + R   +G GLGL I 
Sbjct: 746 VKTGGMMPSSLSKKIKIIFEIEDTGLGIASEEIDKLFEAFGQTESGRNSHQGTGLGLPIS 805

Query: 762 ESFINLHGGHVSISS 776
           + F+ L GG + ++S
Sbjct: 806 QKFVELMGGKIGVNS 820


>gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1252

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 127/243 (52%), Gaps = 5/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  + +K E L  + + K+ F+ ++S+ELR+PL +++  +  L  +K  +L+  Q +  
Sbjct: 573 AKNDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDEDQVESA 632

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+N++LDL+ +++G M +N   +VL   + ++      +  +  + + 
Sbjct: 633 NIIYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQATKKKLDLD 692

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGS 728
           +I    L   +  D QRL QI   ++SNA+ F+ +G  + L+  R N D  +FSV ++G 
Sbjct: 693 LIYYEDLPEKIRTDPQRLDQILKNLISNALKFTERGR-IQLEVKRQNSDKILFSVIDSGI 751

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE+   ++F  F  V  +   +  G GLGLSI      L GG + + S     +T + 
Sbjct: 752 GIPEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSKVNKGSTFSL 811

Query: 787 RIP 789
            +P
Sbjct: 812 LLP 814


>gi|290511586|ref|ZP_06550955.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Klebsiella sp. 1_1_55]
 gi|289776579|gb|EFD84578.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Klebsiella sp. 1_1_55]
          Length = 784

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L S+Q +Y
Sbjct: 269 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 325

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++     +  +  +R 
Sbjct: 326 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 385

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++   D GD 
Sbjct: 386 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 436

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IPE     +F  +  V ++H G+   G G+GL++        GG +S++
Sbjct: 437 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 496

Query: 776 SSD-EGVT-TINCRIPS 790
           S   +G T T+    P+
Sbjct: 497 SQPGKGATFTLTVHAPA 513


>gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1231

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 127/243 (52%), Gaps = 5/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  + +K E L  + + K+ F+ ++S+ELR+PL +++  +  L  +K  +L+  Q +  
Sbjct: 552 AKNDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDEDQVESA 611

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+N++LDL+ +++G M +N   +VL   + ++      +  +  + + 
Sbjct: 612 NIIYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQATKKKLDLD 671

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGS 728
           +I    L   +  D QRL QI   ++SNA+ F+ +G  + L+  R N D  +FSV ++G 
Sbjct: 672 LIYYEDLPEKIRTDPQRLDQILKNLISNALKFTERGR-IQLEVKRQNSDKILFSVIDSGI 730

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE+   ++F  F  V  +   +  G GLGLSI      L GG + + S     +T + 
Sbjct: 731 GIPEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSKVNKGSTFSL 790

Query: 787 RIP 789
            +P
Sbjct: 791 LLP 793


>gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 637

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 136/276 (49%), Gaps = 20/276 (7%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           I  F+  R+   G L  +S   L YS  P+ +AQ  +  V+        R +TE+ E   
Sbjct: 366 IEHFETVRRRKDGQLIHMS---LSYS--PIRDAQGRVVAVSTIG-----RDITERKEM-- 413

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             +++K+  +  VS+E+R+PLT ++G+T+ +  +++ +   +Q +Y+      S  L  L
Sbjct: 414 --EQMKDEMISAVSHEMRTPLTAMLGYTEFMLDNEVPA--DQQREYLRITLHESEKLNEL 469

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + + LDL  + +    + +  + L  LL E           ++I +   SD  L     D
Sbjct: 470 IGNFLDLQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITLDCPSD--LPRICGD 527

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
            ++L Q+F+ ++SNA+ +S KG  V + A R+    + +V++ G  I     + +F RF 
Sbjct: 528 NKQLRQVFNNLVSNAVKYSPKGGAVRVAARREKDCVVITVRDEGIGISPQAVERIFERFY 587

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            V+N       G GLGL++V   +  HGG V + S+
Sbjct: 588 RVNNTACRVFGGTGLGLALVREIVTAHGGEVWVEST 623


>gi|320156917|ref|YP_004189296.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319932229|gb|ADV87093.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 716

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 122/239 (51%), Gaps = 7/239 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++    R +++L+E  +    A+  K+ F+ ++S+ELR+PL  ++G+T L+K  +   L
Sbjct: 238 VDIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQ--RL 295

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +K  +Y++ I+ S   LL+L+ND+LD++ +DAG   +        ++  E+   +  K 
Sbjct: 296 TAKHHEYLDIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKA 355

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGD- 718
            +  + +    +  +  FV  D  +  Q+   +L NA+ F+ +G+    I   A  NG  
Sbjct: 356 MQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQH 415

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              F V + G  I E+  + VF  F        + G GLGLSI + F+ L GG + + S
Sbjct: 416 KVTFEVSDTGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKS 474


>gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 919

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 11/234 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  LT        A + K+ F+ ++S+E+R+PL+ IIG T +  T    +   +  + 
Sbjct: 409 RREEDLTTARRQAEAASQAKSGFLANMSHEIRTPLSGIIGLTQMTLTQ---NPRPEIREN 465

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  SS  LL +VNDILD + ++AG M+       L D L+   +S      +  + +
Sbjct: 466 LELILDSSRSLLGIVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQKGLTL 525

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF---SVK 724
            V  D ++ + V  D  R++Q+   ++ NA+ F+ +G   V L  AR  GD +    SV+
Sbjct: 526 GVRIDPQVPAMVHGDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLAR-PGDPMLVSCSVR 584

Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
           + G  IPED    +F  F    + R +R  G GLGL+I    + + GG + + S
Sbjct: 585 DTGIGIPEDRLHELFQVFSQLESTRAKRYGGTGLGLAISRRLVEMMGGAIDVES 638


>gi|229092208|ref|ZP_04223389.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42]
 gi|228691199|gb|EEL44963.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42]
          Length = 448

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIN 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++  + +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|332991785|gb|AEF01840.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas sp. SN2]
          Length = 887

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 127/243 (52%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LTE      +A   K+ F+ ++S+E+R+P+  IIG  +L +   +  +    S Y++  +
Sbjct: 378 LTESKIKAERATASKSIFLANMSHEIRTPMNGIIGLIELAQQHPVPDI---VSGYLDKAA 434

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VIS 673
            SS IL++++NDILD + ++AG +K+   +  L+ L + +   IA K  E N+ ++ ++S
Sbjct: 435 YSSQILMSVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALKAKEKNLVVRFIVS 494

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI---FSVKNNGS 728
                  + D  R+ QI   I SNA+ F+ +G   I    +  D G+ +    +++++G 
Sbjct: 495 PSIPPQVIGDPLRIAQIIMNIGSNAVKFTEQGQICIRFDGSINDKGNLLSLTMNIEDSGI 554

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + E     +FN F        R+  G GLGL+IV+   +L GG +S +S +   +T   
Sbjct: 555 GMSERQLARIFNPFTQADDATNRKYGGTGLGLTIVKQLTDLMGGSLSATSVEGKGSTFTI 614

Query: 787 RIP 789
            +P
Sbjct: 615 SLP 617


>gi|312890874|ref|ZP_07750403.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311296657|gb|EFQ73797.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 510

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 117/220 (53%), Gaps = 10/220 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA   K+ F+  +S+E+R+P+  +IGFT LL      S   +Q +Y++ +  S+  LL L
Sbjct: 130 KAALTKSQFLSTMSHEIRTPMNAVIGFTHLLLQL---SPRPEQMEYLKLLKFSAENLLVL 186

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +NDILD + ++AG ++   +   + DL++ ++ ++  K +E NI++K++ D  L   V  
Sbjct: 187 INDILDFSKIEAGRVEFEEADFSIKDLVSNIRLALLQKANEKNIQLKLLMDHDLPDVVKG 246

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
           D  R+ QI + ++SNA+ F+ +G   I+ +     D      F V + G  I  +    +
Sbjct: 247 DPVRIGQILTNLISNAVKFTKEGKVTIVASLHKKYDDYTIVDFEVIDTGIGIAANKLDDI 306

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F+ F   A    R+  G GLGL+I +  + L    + + S
Sbjct: 307 FDSFTQAASDTTRKFGGTGLGLTITKRLLELMNSEIKVKS 346


>gi|257790999|ref|YP_003181605.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257474896|gb|ACV55216.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 762

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 20/254 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAERA    +E  R+A   K+ F+  +S+E+R+P+  I+G T +   +       K    
Sbjct: 350 RAERA----SEEARRASLAKSEFLSRMSHEIRTPMNGIMGMTAIALENA--HDEEKARAC 403

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +S  L+ L+NDILD++ +++G + +   T      +  +     T+  E  IR 
Sbjct: 404 LEKIDVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQGIRY 463

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----------AARDNG 717
           K    G L S  V D  RL QI   ++ NA  F+ +  +V L+           AA D+ 
Sbjct: 464 KTEEVGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAHDDA 523

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
            ++ FSV + G  I  +  + +F+ F        RR G GLGL+I + F  + GG +S+S
Sbjct: 524 IWLRFSVTDTGCGIKPENRERIFSSFEQGDESSCRRGGTGLGLAITKRFAEMMGGRISLS 583

Query: 776 SSDEGVTTINCRIP 789
           S     +T    +P
Sbjct: 584 SEVGKGSTFTVDVP 597


>gi|229138611|ref|ZP_04267195.1| hypothetical protein bcere0013_17270 [Bacillus cereus BDRD-ST26]
 gi|228644890|gb|EEL01138.1| hypothetical protein bcere0013_17270 [Bacillus cereus BDRD-ST26]
          Length = 276

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 135/245 (55%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 30  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 88

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+++L+   ++   ++L+ S + +  L+ ++      ++ + N+  
Sbjct: 89  VSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSF 148

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 149 CMKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQC 207

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S  +LH G +++ S+D+  T  
Sbjct: 208 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIADLHQGDITVRSNDKE-TVF 263

Query: 785 NCRIP 789
             ++P
Sbjct: 264 TVKLP 268


>gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
 gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
          Length = 948

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 128/253 (50%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 442 VLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 501

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +   
Sbjct: 502 ---KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYMP 558

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  V+       GD+
Sbjct: 559 LVVRKQLGLYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDTGCIVLHVCLV--GDY 616

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           +   V++ G  IP      +F+ F       QR  +G GLGL+I E  I++  G +S+ +
Sbjct: 617 LTIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDT 676

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 677 EPGMGSQFTIRIP 689


>gi|206577626|ref|YP_002236379.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae 342]
 gi|206566684|gb|ACI08460.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae 342]
          Length = 779

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L S+Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++   D GD 
Sbjct: 381 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 431

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IPE     +F  +  V ++H G+   G G+GL++        GG +S++
Sbjct: 432 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 491

Query: 776 SSD-EGVT-TINCRIPS 790
           S   +G T T+    P+
Sbjct: 492 SQPGKGATFTLTVHAPA 508


>gi|149376819|ref|ZP_01894576.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358940|gb|EDM47407.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 783

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 14/235 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+++A+R A+  KN F+ +VS+ELR PL +++G+ +LL  + L   +  Q +YV  +  +
Sbjct: 246 ERDQAVR-ANHAKNQFLANVSHELRIPLQSVLGYANLLSDTPL---DQDQREYVHTLLNA 301

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L  ++ND+LD+++++AG + L+     L D LN++   +  +  E  + +++  D  
Sbjct: 302 SEGLSAIINDLLDISSMEAGKLVLDDIPFDLRDTLNDLVHMLGARAREKGLALELRIDEN 361

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSI- 730
           L  +   D  RL QI   + SNA+ F+  G  +I   +   RDN      +V++ G  I 
Sbjct: 362 LPWALKGDPVRLRQILLNMTSNAIKFTDSGHVLISIEVLGRRDNNVRLRMAVEDTGVGIN 421

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           PED+   V+  +V    R QR+  G GLGL+I    + L  G + + S   EG T
Sbjct: 422 PEDI-PLVYEPYVQLGQRFQRQLPGAGLGLTICRQLVQLMDGSLDLESKPGEGST 475


>gi|1679757|gb|AAB19216.1| two-component histidine kinase CHK-1 [Glomerella cingulata]
 gi|1679760|gb|AAB19217.1| two-component histidine kinase CHK-1 [Colletotrichum
           gloeosporioides]
          Length = 745

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 15/223 (6%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++A E K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  LL
Sbjct: 104 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLL 160

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  I +  + ++V
Sbjct: 161 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWV 220

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDFI--FSVKNNGSSIP 731
             D+ R+ Q+   ++ NA+ F+++G            K+A  N + +  F+V + G    
Sbjct: 221 KGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRIFTNTKSALSNDEIMLEFAVIDTGRGFT 280

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           ++    +F  F  +  +   Q  G GLGL I    + LHGG +
Sbjct: 281 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKM 323


>gi|315127664|ref|YP_004069667.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas sp. SM9913]
 gi|315016178|gb|ADT69516.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas sp. SM9913]
          Length = 1256

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 134/263 (50%), Gaps = 16/263 (6%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           L  S+I   N+Q +   +++ D       LT+  +   +A   K+ F+ ++S+E+R+PL 
Sbjct: 621 LSMSLIWNENSQPLYYVIHIQDVTE----LTKAKDDAERATLAKSRFIANLSHEIRTPLN 676

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G  D+L    L     +Q+   +Y   ++  LL ++N +LD A V++    L  + +
Sbjct: 677 AVLGLLDMLAEHGLTQRQIQQTSQAKY---AANNLLQMLNSMLDFARVESKEATLQLAPL 733

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSK 704
            L DL++  +  I        I++K+  D ++  F V D  RL Q+   +L+NA+ F++K
Sbjct: 734 CLVDLIDTCESLILPLCQAKQIQLKIDIDSQISPFLVGDTIRLQQVLGNLLTNAVKFTNK 793

Query: 705 GSTVILKAARDNGDFI-----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
           GS  +    + +   I     F V + G  I +   + +F+ F        R  +GVGLG
Sbjct: 794 GSVTLKMTLQPSQSHIEQRICFQVIDTGVGIAQADQRRLFDAFTQGDESSTRLHQGVGLG 853

Query: 758 LSIVESFINLHGGHVSISSSDEG 780
           L+IV+  + L GG +++ SSD+G
Sbjct: 854 LAIVKHSVALMGGEIAL-SSDKG 875


>gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
          Length = 874

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 131/237 (55%), Gaps = 16/237 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYV 610
           +R L +   A + A+E K+ F+ ++S+++R+PL +IIG TD+LK+      ++KQ  + +
Sbjct: 567 KRNLQDALSAAKLANEAKSRFLSNMSHDIRTPLNSIIGMTDILKSH---PDDTKQVEEGL 623

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-I 669
           + IS S   LL L+NDILD++ +++G M L  S   +  +++E+ + +  +   + I  I
Sbjct: 624 DKISMSGRHLLELINDILDMSRIESGKMSLQESGFNIRAMMSELIELVRPQALGSGITFI 683

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721
             I   +  + + D  R+ QI+  ILSNA+ ++  G ++ +   R++GD        +IF
Sbjct: 684 SDIVSIEHDNVIGDELRIKQIYLNILSNAVKYTWAGGSITI-TLREDGDVKNGRRHSYIF 742

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +NG  +  +  K +F+ F    +   G   G GLG++I  + +NL GG + + S
Sbjct: 743 ICSDNGIGMSREFQKHIFDSFERAEDNAIGNVTGTGLGMAIARNLVNLMGGTIDVDS 799


>gi|196231100|ref|ZP_03129960.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224930|gb|EDY19440.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 786

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 141/273 (51%), Gaps = 15/273 (5%)

Query: 529 SIIPLPNAQTMLT----FVNVTDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSP 583
           +++P+ +A    T    F  +T ++RA R   ++  EALR AD  K+ F+  + +ELR+P
Sbjct: 375 TMVPVKSADEFGTLSTNFNEMTTAIRARRMERDRAEEALRHADRRKDEFLAMLGHELRNP 434

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L+ I     L   +  G  +S        I   +  L  LV+D+LD+A +  G ++L   
Sbjct: 435 LSAIANAVRLWNVA--GDDHSAVELAHGVIERQTDNLSRLVDDLLDVARITEGKIELRKR 492

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
            + +N+ ++ V +++   + +    ++++ +     +V AD  R+ QI S +L+NA+ ++
Sbjct: 493 PVDVNESIHRVVEALRPAIDQQRHELQLLLENDAKIWVDADPTRVEQIISNLLTNAIKYT 552

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            KG  + ++A R+  + + SV + G  I   M   +F+ F    H   R   G+G+GLS+
Sbjct: 553 RKGGEIRIEARREGHEAVISVNDTGIGIAPRMLPQIFDLFTQGDHSLDRPTGGLGIGLSL 612

Query: 761 VESFINLHGGHVSISSSDEGV---TTINCRIPS 790
               + LHGG  +I++  EGV   +T    +P+
Sbjct: 613 CRRLVELHGG--TITAFSEGVGRGSTFTVHLPT 643


>gi|254420242|ref|ZP_05033966.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196186419|gb|EDX81395.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 549

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+ ++S+ELR+PL  +IGF D+++    G L  + + Y + I  +   LL+L+ND+L
Sbjct: 307 KTRFLANMSHELRTPLNAVIGFADIMRQRLFGPLPDRYAGYADSIHQAGGHLLDLINDVL 366

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ ++A   +L   ++   D ++     +  +  +  + +  +      +  AD + L 
Sbjct: 367 DLSKIEAERYELALESLDARDPVSAAVALVRVQADDKGVDLAPVLPSIPLTVQADARALK 426

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAH 747
           Q+   +LSNA+ F+  G +V L            V + G  I PED+ + V   F     
Sbjct: 427 QMALNLLSNAVKFTPTGGSVTLTLDGVGPYLELVVSDTGVGIAPEDL-RRVGRPFEQAGG 485

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q+ +G GLGLS+V S   LHGG +SI S+    T +  R+P
Sbjct: 486 ADQKAQGTGLGLSLVRSLTELHGGRMSIDSTLGEGTAVMVRLP 528


>gi|163848714|ref|YP_001636758.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526657|ref|YP_002571128.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163670003|gb|ABY36369.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450536|gb|ACM54802.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 854

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVE 611
           R +  +NEALR+A+ +K++F+  VS++LRSPLT I     DLL+     S    ++  + 
Sbjct: 598 RQVASENEALRQANHLKSTFLAGVSHDLRSPLTAIRASVEDLLERQHHVSPGEHRA-LLS 656

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRI 669
            I+  +  L   V+ +LDL+ ++AG + L+   +  N L+    Q + T  H+     R+
Sbjct: 657 NIARETARLSRFVDQLLDLSRIEAGTLPLDREWVEFNALV----QDVVTSFHQQYPTCRV 712

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +V     L     D   + Q+   +L NA  +      + L+A   + D + SV + G  
Sbjct: 713 EVCVSPTLPLLYIDPSLITQVLWNLLENAQKYGPSEGPITLEAFCTHTDLVLSVGDRGPG 772

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +F+RF  +    R  R G GLGL+I    +  H G + +     G +     
Sbjct: 773 IPASERHRIFDRFYRLERDRRSHRSGSGLGLAICHGIVTAHQGSIWVDERPGGGSVFRIT 832

Query: 788 IP 789
           +P
Sbjct: 833 LP 834


>gi|212527504|ref|XP_002143909.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
 gi|210073307|gb|EEA27394.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
          Length = 2403

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 135/254 (53%), Gaps = 21/254 (8%)

Query: 550  RAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +A+ A  E N  ++    A   K+ F+ +VS++LR+P+  +IG ++LLK +KL   + +Q
Sbjct: 1864 KAKIAEAEANHNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLSELLKGTKL---DKEQ 1920

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              YVE I   +  LL L+NDILD + ++AG MK++   + L + ++EV +++     +  
Sbjct: 1921 DNYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLSLKETISEVVRALRYTHRDRG 1980

Query: 667  IRIKVISDGKLGS----FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGD 718
              ++ I D  +       + D  RL QIF  +LSN+  F+ KG    + ++++  +    
Sbjct: 1981 --LETIEDLDMVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPKGHVKVTAMVVREGKGRVR 2038

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSI 774
               SV + G  IPE+    +F  F S A     R   G GLGLSI ++ I ++ GG + +
Sbjct: 2039 LECSVSDTGIGIPEEHKSRLFRPF-SQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWL 2097

Query: 775  SSSDEGVTTINCRI 788
             S+    TT+  ++
Sbjct: 2098 DSTPGVGTTVTFQL 2111


>gi|158338239|ref|YP_001519416.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158308480|gb|ABW30097.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 2040

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 22/267 (8%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNII 588
            AQ  ++  N       E+ + ++ + LR        A++ K+ F+  +S+ELR+PL  I+
Sbjct: 1536 AQAAISIDNAQLYASVEKKVAQRTQQLRTAQLEAEHANQAKSDFLASMSHELRTPLNAIL 1595

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            GF+ L+  ++   L     + +  I+ S   LL+L+ND+L L+ ++AG   L   T    
Sbjct: 1596 GFSQLM--AQDARLPQHLGESLAIINRSGEHLLDLINDVLALSKIEAGKTTLQLDTFNFY 1653

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS- 706
            + L  +   +  +    N+         +   + AD ++L QI   +L NA+ F+ +G  
Sbjct: 1654 EFLQAIHGMLQLRAKSKNLDFHFEQSPDIPEVIQADERKLRQILINLLGNAIKFTEQGRV 1713

Query: 707  TVILKAARDNGDFI---------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGL 756
            T+ +  A    + +         F V++ G+ I +D   SVF  FV + +    R+G GL
Sbjct: 1714 TLRVTNAHSQSEGLTPPDISVLQFEVEDTGAGIAKDELDSVFEAFVQTQSGIKSRQGTGL 1773

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTT 783
            GL I +SF+ L GG + +  S+EG+ T
Sbjct: 1774 GLPISQSFVQLMGGQLQV-RSEEGIGT 1799


>gi|110798905|ref|YP_695966.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|110673552|gb|ABG82539.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
          Length = 787

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487
           +++G T +++ + +     +G+I   N A   +    E  L    +        N+    
Sbjct: 400 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 458

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546
           S+Y+NE         I+T   D+ +S +G ++L S S    S I   N    L +V V  
Sbjct: 459 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 504

Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603
             + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     LL TSK    N 
Sbjct: 505 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 564

Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L  ++  S+   +
Sbjct: 565 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 624

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +    D       
Sbjct: 625 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADETWVDIR 684

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IP  M + +F RF+ N     R   G G+GLS+V+S + LH G V +  S+E 
Sbjct: 685 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 744

Query: 781 VTTINCRIPS 790
            +  +  +P+
Sbjct: 745 GSEFSILLPN 754


>gi|238027848|ref|YP_002912079.1| Histidine kinase [Burkholderia glumae BGR1]
 gi|237877042|gb|ACR29375.1| Histidine kinase [Burkholderia glumae BGR1]
          Length = 500

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 4/232 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+ E LR+ D +K  F+  +S+ELR+PL++I   ++LL     G L  +Q + V  I 
Sbjct: 229 LDERAEELRRVDSLKTRFLSDMSHELRTPLSSIRALSNLLLNRLDGELTGEQERQVLLIR 288

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L ++VND+LDLA ++AG   +       + L+  V+ ++A  +    +++     
Sbjct: 289 KSAEDLTDIVNDLLDLAKIEAGRTDVLPVLFEPHTLVAAVRATLAPLLSSPAVQLIFDDM 348

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPED 733
             L + + D  ++ QI    +SNA+ F+ +G   V  +   D+    F V + G  I ++
Sbjct: 349 RGLPAMLTDEAKVTQILRNFVSNALKFTERGEIRVSARLQPDDEHITFFVTDTGIGIAQE 408

Query: 734 MCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             + +F  F    +H  QR +G GLGL +  +   L GGHV + S   EG T
Sbjct: 409 DQELIFEAFGQVRSHLQQRVKGTGLGLPLCRNLAALLGGHVGVESRLGEGST 460


>gi|119512709|ref|ZP_01631781.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
 gi|119462629|gb|EAW43594.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
          Length = 1287

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 29/282 (10%)

Query: 535  NAQTMLTFVNVTDSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            N + M+  V+   ++  ER+     L ++ E LR+A+ +K+ F+  +S+ELRSPL  I+G
Sbjct: 853  NQRGMMQAVSDQIAIAMERSSLIASLQQQTEQLREANRMKDEFLAILSHELRSPLNAILG 912

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +  LL++ KL  +   ++  +E I  ++ +   LV D+LD++ +  G + L+  T  L  
Sbjct: 913  WAQLLRSRKLSDIQIAKA--METIERNARMQTQLVEDLLDISRMIRGKLHLHVCTCNLVP 970

Query: 650  LLNEVKQSI--ATKMHENNIRIKVISDGKLGS------FVADRQRLLQIFSKILSNAMDF 701
            L+    +++  A +  E ++RI +I   ++           D +RL QI   +LSNA+ F
Sbjct: 971  LIESAVETVHLAAQAKEIDLRISLIPSPEMPQDHSRFLVSGDIERLQQIIWNLLSNAIKF 1030

Query: 702  SSKGSTVIL----------KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            +  G  + +          K AR    +    V + G  I  +    VF+RF        
Sbjct: 1031 TPTGGRIEIRLCQSVEDDEKLARTITSYAQIQVIDTGIGIKPEFLPYVFDRFRQADSSST 1090

Query: 751  RR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            R   G+GLGL+IV   + LHGG +S+ S  E    T   ++P
Sbjct: 1091 RSYGGLGLGLAIVRHLVELHGGIISVDSQGENEGATFTVKLP 1132


>gi|187730817|ref|YP_001881876.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
 gi|187427809|gb|ACD07083.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
          Length = 778

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|186686479|ref|YP_001869675.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468931|gb|ACC84732.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 761

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 121/230 (52%), Gaps = 5/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A+ IK+ F+  VS+ELR+PL +++G+  +++  KL    +  S+ +E I  ++ +   
Sbjct: 383 QEANRIKDEFLAIVSHELRTPLNSMLGWVQIIRHRKLD--EAITSKALETIERNAKLQSK 440

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++DILD++ +  G ++LN   + L  ++N   ++I       +I+++   D  +G  + 
Sbjct: 441 LIDDILDISRIVQGKIRLNLRKVDLVIVINTAIEAIYPTSEIKDIQVESNLDSSVGEIMG 500

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D +RL Q+   +LSNA+ F+  G  V +   + N +   SV + G  I  +    +F RF
Sbjct: 501 DAERLQQVVWNLLSNAVKFTPSGGRVEVCLKQVNSNAQISVSDTGKGISGEFLPYIFERF 560

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                   R   G+GLGL+IV   + +H G V   S  EG+  T    +P
Sbjct: 561 RQADSTTTRVDGGLGLGLAIVRHLVEIHSGTVYAVSEGEGLGATFTVLLP 610


>gi|192360040|ref|YP_001981948.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686205|gb|ACE83883.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 668

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 131/251 (52%), Gaps = 5/251 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  RAE  +    E   KA++ K++F+  +S+ELR+PL  I+G+T L +    G+L
Sbjct: 271 MDITEVKRAEERVLLAKEQAEKANQAKSAFLSSMSHELRTPLNAILGYTQLFEYD--GNL 328

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q   +  I  +   LL L+ND+LDLA +++G M ++   ++++ ++ E    +  + 
Sbjct: 329 SREQVTNIREIRKAGEHLLQLINDVLDLAKIESGKMMVSLEPVLVSRVIKECFTFVQPQA 388

Query: 663 HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
               IR+   ++D +    VAD  R  Q    +LSNA+ ++  G  V ++      D + 
Sbjct: 389 DALGIRLYATLADQEKTYVVADLVRFKQALLNLLSNAIKYNIVGGEVEVRLDVQPMDQLR 448

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            +V++ G  IP D    VF  F   +A      G G+GL I +  + +  G++  SS++ 
Sbjct: 449 ITVRDTGRGIPADRQHEVFQPFNRLSAENSNIEGSGVGLVITKQLVEMMHGNLDFSSAEA 508

Query: 780 GVTTINCRIPS 790
             T+    +P+
Sbjct: 509 IGTSFWIDLPT 519


>gi|85058486|ref|YP_454188.1| hybrid sensory histidine kinase BarA [Sodalis glossinidius str.
           'morsitans']
 gi|84779006|dbj|BAE73783.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
          Length = 925

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     L+  Q  Y++ I  S   LL
Sbjct: 288 QEAVRIKSKFLANMSHELRTPLNGVIGFTRQTLKTP----LSPTQRDYLQTIERSGNHLL 343

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +++ND+LD + ++AG + L      L  +L+EV   +A   HE  + + +    ++  +V
Sbjct: 344 SIINDVLDFSKLEAGKLMLETIPFALRAILDEVVILLAHTAHEKGLELILQVQREVPEYV 403

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCK 736
             D  RL Q+ + ++ NA+ F+ +G  +I  +     R+  +    +++ G  IPE    
Sbjct: 404 IGDPLRLQQVMTNLIGNAIKFTEQGHIIIRVSCQGHERERVEINVQIRDTGIGIPERQQS 463

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  F        RR  G GLGL I +  ++  GG ++  S     +T    IP
Sbjct: 464 QLFQAFRQADASIARRHGGTGLGLVITQKLVHEMGGEITFRSRTGRGSTFWFHIP 518


>gi|37678828|ref|NP_933437.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus
           YJ016]
 gi|37197569|dbj|BAC93408.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 780

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   L  +Q +Y
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR---LTDEQRKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +    +L   +  D  RL Q+   ++SNAM F+ +G  V+  ++    DF   I  V++
Sbjct: 381 DLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTVSSEVEEDFATIIIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++    IN+  G +++ SS+EG  
Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDITV-SSEEGFG 499

Query: 783 ---TINCRIP 789
              TI+  +P
Sbjct: 500 STFTISIHVP 509


>gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1387

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 16/256 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A +++ EK   L    + K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ +Y
Sbjct: 685 QARQSVEEKARQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSDNAEGNLSEKQVEY 744

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I ++   LL L+NDILDLA +++G M +    +   DL +++++      ++  +  
Sbjct: 745 GRTIHSAGADLLGLINDILDLAKIESGTMSVEIEQMHFGDLRSQMERIFRQVANDRGLEF 804

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA------------RD 715
            V     L  + + D +RL Q+   +LSNA  F++ GS T+ ++ A            R 
Sbjct: 805 AVECAANLPRAMLTDPKRLQQVLKNLLSNAFKFTALGSVTLRVEMATGGWDPASESLNRA 864

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           +G   FSV + G  I  D  + +F  F        R+  G GLGLSI      L GG + 
Sbjct: 865 SGVVAFSVIDTGIGIAPDKQRVIFEAFQQADGSTSRKYGGTGLGLSISREIARLLGGEIQ 924

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +T    +P
Sbjct: 925 LESEPGRGSTFTLFLP 940


>gi|186682272|ref|YP_001865468.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464724|gb|ACC80525.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 713

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 16/263 (6%)

Query: 531 IPLPNAQTMLT--FVNVTDSVRAERALTEKNEALR----------KADEIKNSFVQHVSY 578
           +PL + Q ++   F   TD    ++ L E+   L            A+ IK+ F+  +S+
Sbjct: 290 LPLKDEQGIVVKWFGTCTDIHEQKQILEERAHLLELEQIARAKAETANRIKDEFLAILSH 349

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  I+G++ LL++ +L     K SQ +  I  ++ + + L+ D+LD++ +  G +
Sbjct: 350 ELRTPLNAILGWSKLLQSRRLD--QEKTSQALATIEKNANLQVQLIEDLLDISRILQGKL 407

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+ + I L   +    +++        I +  + +  +G  + D  RL Q+   +LSNA
Sbjct: 408 TLDITKINLKSTILSALETMRLAAETKLIEVSTVFEPNVGQVMGDSTRLQQVVWNLLSNA 467

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           + F+ KG  + ++  + +G     V + G  I  +    VF+ F        R   G+GL
Sbjct: 468 LKFTPKGGKIEVRLEQADGYAQIIVSDTGKGISPEFLPFVFDYFRQADSTSTRNFGGLGL 527

Query: 757 GLSIVESFINLHGGHVSISSSDE 779
           GL+IV + + +HGG V   S  E
Sbjct: 528 GLAIVRNIVEIHGGIVKAKSEGE 550


>gi|330985224|gb|EGH83327.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 998

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +G  +S+     +
Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 579

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A     + +F V ++G 
Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 698

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 757

Query: 789 PSKE 792
           P  E
Sbjct: 758 PMHE 761


>gi|227518154|ref|ZP_03948203.1| sensor histidine kinase [Enterococcus faecalis TX0104]
 gi|227074397|gb|EEI12360.1| sensor histidine kinase [Enterococcus faecalis TX0104]
          Length = 393

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S     +  +  Y+ A    LL
Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             V+D+ +   V    + ++ +T  +  L+ ++      +  + N++I+V ++       
Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMVQLIEQLAADFELEAKKINMQIQVKANPASLMME 274

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L+++F+ +LSNA+ +   G  ++++  +   + I +V+N+G +IP+     +F+R
Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGL+I +S + LHGG++  + SD+  T+    +P
Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383


>gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
 gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
          Length = 1771

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +L+  N+T   +    L +  ++   A + K+ F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1017 AVLSMANITSLKQISNELKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQT 1076

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +L   + KQ  YV+ I  +S  LL ++NDILD + ++AG + +   +  L  +L ++   
Sbjct: 1077 EL---DKKQQNYVQKIDRASKSLLGIINDILDFSKIEAGKLDIESVSFQLETMLEDLSDM 1133

Query: 658  IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
             + K  +  + +   ++         D  RL Q+   +++NA+ F+ +G  ++    L+ 
Sbjct: 1134 FSVKAADKQLELLFAVAPNIPRQLEGDPLRLSQVLINLMNNAVKFTDQGEVLLSISQLER 1193

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              D     FSV++NG  + ED    +F  F        R+  G GLGL+I +  + L GG
Sbjct: 1194 VDDAITLRFSVRDNGIGLTEDQRNKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGG 1253

Query: 771  HVSISS 776
             + + S
Sbjct: 1254 EIGVES 1259


>gi|196031953|ref|ZP_03099367.1| sensor histidine kinase [Bacillus cereus W]
 gi|195994704|gb|EDX58658.1| sensor histidine kinase [Bacillus cereus W]
          Length = 458

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I I+   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|150402473|ref|YP_001329767.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033503|gb|ABR65616.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 639

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 137/256 (53%), Gaps = 8/256 (3%)

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M T +N++D      AE      NE L++ D +K+  +  VS+ELR+PLT+I G+ +L+ 
Sbjct: 381 MATQINISDEKLKKHAEELKASYNE-LKELDNLKSELIAIVSHELRTPLTSIKGYVELVL 439

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +G++N  Q + ++    +   L  L+  +LDL+ ++ G +++    + L  ++ +V 
Sbjct: 440 DGTMGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVI 499

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +     E NI++    + +  +  AD+ R+ Q+ + ++ NA+ FS    ++++    +
Sbjct: 500 EYLKPLATEKNIKLN--REVEEITIEADKDRITQVLTNLIENAIKFSPANESIMISGVLE 557

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +      V ++G+ IP+   + VFNRF  V ++ + ++ G GLGL++ +S +  H G + 
Sbjct: 558 DEHVHLKVTDHGAGIPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIW 617

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +T +  +P
Sbjct: 618 VESELGKGSTFHILLP 633


>gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
 gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
          Length = 534

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 113/216 (52%), Gaps = 4/216 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L+  D +K  F   +S+ELR+PLT I G+ +LLK   LG +N +Q   +  I AS   
Sbjct: 299 ERLKSLDRMKMEFFTLISHELRTPLTTIKGYAELLKDGTLGPVNDEQRDRLSRIDASVDR 358

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  +V  + DL+ V +         + LN+L+ EV + I        ++I +     L  
Sbjct: 359 LTGIVESLSDLSGVASRQYAGEKIPVSLNELIEEVVRGIDFLADLKKLKITLDVPLTLPM 418

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSV 738
             ADR R+ Q+   +L+NA+ ++  G  + + + RD  D  + +V++ G  IP++  +++
Sbjct: 419 ISADRSRIQQVLLNVLNNAIKYTPDGGQISI-SVRDECDHLLIAVRDTGIGIPKEDIENI 477

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
           F+ F  + ++   + +G GLGL+I    +  HGG +
Sbjct: 478 FSGFYHSGYKLSYEYKGAGLGLAISRKIVESHGGKI 513


>gi|21666555|gb|AAM73756.1|AF396830_1 ethylene receptor [Prunus persica]
          Length = 738

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 137/265 (51%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L  +T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------- 709
               + + ++ + + +D  + + V D +RL+QI   ++ NA+ FS +GS  I        
Sbjct: 432 PVASVKKLSVSLNLAADLPVQA-VGDEKRLMQIVLNVVGNAVKFSKEGSISITAFVAKSE 490

Query: 710 ----------LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
                       A  DN  ++   VK++ S I P+D+ K +F +F        R   G G
Sbjct: 491 SLRDFRAPEFFPAQSDNHFYLRVQVKDSRSGINPQDIPK-LFTKFAQTQSLATRNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGPG 574


>gi|53712464|ref|YP_098456.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215329|dbj|BAD47922.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 637

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 135/263 (51%), Gaps = 7/263 (2%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P    + +    ++ D +R  + L E  +   +AD +K+ F+ ++S+E+R+PL  I+G
Sbjct: 245 IAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 304

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     ++ 
Sbjct: 305 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSG 361

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L++EV +    KM +  +++ VI   +    + DR R+ Q+    LSNA+  + +GS + 
Sbjct: 362 LVDEVDKVHRLKM-KKGVKLNVIRPSEEIWILTDRNRVTQVLFNFLSNAIKNTIEGS-IT 419

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
               ++       V + G  I ++    +F RF       Q  G GLGL I +S +   G
Sbjct: 420 FGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 477

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S     +T    +P+++
Sbjct: 478 GRIEVESELGQGSTFILYLPNRQ 500


>gi|330906560|ref|XP_003295520.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1]
 gi|311333138|gb|EFQ96385.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1]
          Length = 1988

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 130/254 (51%), Gaps = 28/254 (11%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + L++  + K+ F+ ++S+E+R+PL  I G  + L  S    LN++Q ++V  I AS+  
Sbjct: 1261 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNAEQLEHVNIIKASTDS 1317

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-----SIATKMHENNIRIKVISD 674
            LLNL+NDILDL+ V+AG++KL+   + L  LL EV       +I   +  N +    + +
Sbjct: 1318 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYL----VEE 1373

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDFI-FSVK 724
            G       D+ R+ Q+   ++ NA+ F+ +G   I          +  ++N   + F V 
Sbjct: 1374 GVPAEVKGDKFRIRQVLLNVVGNAIKFTERGEIFIRCKVQPPDRSRPLKENETMVRFEVI 1433

Query: 725  NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGV 781
            + G    +   K +F RF  +  +   Q  G GLGL+I   F+ LHGG +   S+  +G 
Sbjct: 1434 DTGQGFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGS 1493

Query: 782  T---TINCRIPSKE 792
            T   TI   +P+ E
Sbjct: 1494 TFFFTIKFGLPTAE 1507


>gi|255004059|ref|ZP_05278860.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Virginia]
          Length = 442

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 161/342 (47%), Gaps = 18/342 (5%)

Query: 465 SLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           SL + +   L+ G  +R + A     T      + DG  +F  +I ++    ++L+G   
Sbjct: 96  SLSEAQLAALANGDVLRGVVADGRIFTVFPIVLQDDGPKVFLQVIKNYGKLSQALRGVHG 155

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVN-----VTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           +L   V+   +  L     ++ F       ++    A   L E+ E   +    K+ F+ 
Sbjct: 156 ML---VIPVGVAILSCVCLVVLFYRRSARLLSSQYDANLELQEQKETAERESVSKSQFLA 212

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATV 633
           +VS+ELR+PL +IIGF++++++  LG + S++  +Y+  I  S   LL+L+NDILD +  
Sbjct: 213 NVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYINDIHQSGVHLLSLINDILDFSKA 272

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +A  + + +    L  +++     +  +  +  + +K     +    +AD +R+ Q+   
Sbjct: 273 EANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKEMPEEPIVMLADPKRMKQVIIN 332

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP-EDMCK--SVFNRFVSNAHRGQ 750
           +LSN++ F+ +G  V L A       I  + + G  I  +D+ K  SVF +   + H  +
Sbjct: 333 VLSNSVKFTPEGGLVKLCAEIRGEQLIVEISDTGIGIAQQDLYKVMSVFGQ-ADSTHSRK 391

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL + +  + L  G  SI S     T +    P K+
Sbjct: 392 YEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFPHKQ 433


>gi|194434503|ref|ZP_03066763.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|194417282|gb|EDX33391.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|320181485|gb|EFW56403.1| Aerobic respiration control sensor protein arcB [Shigella boydii
           ATCC 9905]
 gi|332086332|gb|EGI91484.1| aerobic respiration control sensor protein arcB [Shigella boydii
           5216-82]
 gi|332086398|gb|EGI91545.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 155-74]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|27364012|ref|NP_759540.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus
           CMCP6]
 gi|27360129|gb|AAO09067.1| Aerobic respiration control sensor protein arcB [Vibrio vulnificus
           CMCP6]
          Length = 780

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   L  +Q +Y
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR---LTDEQRKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +    +L   +  D  RL Q+   ++SNAM F+ +G  V+  ++    DF   I  V++
Sbjct: 381 DLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTVSSEVEEDFATIIIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++    IN+  G +++ SS+EG  
Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDITV-SSEEGFG 499

Query: 783 ---TINCRIP 789
              TI+  +P
Sbjct: 500 STFTISIHVP 509


>gi|56695057|ref|YP_165404.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56676794|gb|AAV93460.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 739

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 11/244 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+T +VR E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +LL  +   +L
Sbjct: 190 LNITSTVRYEAELRAAREKAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDT---AL 246

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  Y   I  S   LL ++ND+LD + ++A  M L+     L   ++EV   +   +
Sbjct: 247 DEEQQLYASTIKNSGEALLVIINDVLDYSKIEAEKMMLHPEPFDLERCIHEVAMLMQPIV 306

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDN 716
            +  + + V  D  L + FV D  R+ Q+ + +L NA+ F++KG      T +   A   
Sbjct: 307 RDKGLTLLVDYDLFLPTLFVGDPGRVRQVLTNLLGNAVKFTTKGHILIRVTGVPDPATGR 366

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                ++++ G  IP +    +F  F  V N    Q  G GLGL+I +  I + GG V +
Sbjct: 367 CAIHVAIEDTGIGIPREKLAHIFGEFNQVENERNRQFDGTGLGLAISQRLIQMMGGTVWV 426

Query: 775 SSSD 778
            S +
Sbjct: 427 ESEE 430


>gi|332705093|ref|ZP_08425175.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332356043|gb|EGJ35501.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 428

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 132/260 (50%), Gaps = 24/260 (9%)

Query: 547 DSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           D  +A + L E    LRKA       + +K+  +  +S+E R+PLT+I+  ++LL+    
Sbjct: 152 DLQQANQQLRELEAQLRKALAQEQEFNHLKSRMIIAISHEYRTPLTSILSSSELLEAYCH 211

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST----IVLNDLLNEVK 655
               SKQSQ+ + I A+   + +L+ +++ L   +   ++   +     + + DL+++++
Sbjct: 212 RWDKSKQSQHFQRIRAAVQRITDLMGNVMFLNKAEFEQLEFQPTPLDLGVFVRDLVDDMQ 271

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           Q    K H     + +  D   G  + D + LLQI + ++ NA+ +S  G  V++K    
Sbjct: 272 QHYGDKHH-----LILNIDQDCGRPLFDSKLLLQILTHLIDNAIKYSPNGGKVLIKFTCQ 326

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHGGH 771
           N   IF V ++G  IP     ++FN F    HRG       G GLGL+IV+  +++HGG 
Sbjct: 327 NNQVIFEVSDDGIGIPRKEQHNLFNAF----HRGSNVENISGTGLGLAIVKKCVDIHGGT 382

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +S++S     TT    +P +
Sbjct: 383 ISLNSDVSVGTTFTVMLPRR 402


>gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 993

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 15/280 (5%)

Query: 525 VLEYSI--IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +L +S+   P+     ++TF ++T     + AL +  +A   A+  K+ F+ ++S+E+R+
Sbjct: 268 MLTFSVNCTPIAGQGYLVTFEDITLIEENKVALAKARDAAENANAAKSDFLANMSHEIRT 327

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++GFTD+L+   L S   +   ++  I  S   LL L+NDILDL+ +++G ++   
Sbjct: 328 PLNAVLGFTDVLRRG-LVSNGDEAVDHLNMIHRSGAHLLELINDILDLSKIESGHLQTET 386

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
               L+D++ +V  ++  K  E N+ +KV     +   + +D  RL Q+ + ++ NA+ F
Sbjct: 387 IDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAIPRTIQSDPTRLRQVVTNLVGNAIKF 446

Query: 702 SSKGSTVILKA-------ARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           +  GS  I+ +       A +  D I  V   + G  +  D    +F+ FV       R+
Sbjct: 447 TESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRK 506

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGLSI        GG +++ S     +T    +P+
Sbjct: 507 FGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFRVELPT 546


>gi|288940116|ref|YP_003442356.1| histidine kinase [Allochromatium vinosum DSM 180]
 gi|288895488|gb|ADC61324.1| histidine kinase [Allochromatium vinosum DSM 180]
          Length = 451

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+   E    A+  K++F+ ++S+ELR+PL  I G   L++ S    ++ KQ+ +++ + 
Sbjct: 199 LSLAKEQAEAANRAKSAFLANMSHELRTPLNAITGMAYLVRAS---GVSVKQAGWLDTLD 255

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S  LL +++ IL+L+ ++AG M+L+   I L+ L+  V  +I  +    ++ I +  D
Sbjct: 256 GASRHLLEIISAILELSKIEAGGMELDTVPIRLDTLVASVVDTILPQARAKHLHIGLELD 315

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSI 730
                 + D  RL Q      +NA+ F++ GS T+  K      +F+   F V++ G  +
Sbjct: 316 PVSTPLMGDPARLRQALLNYAANAVKFTATGSVTLRTKVIEQTPEFVMMRFEVEDTGVGL 375

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           P D+   +F  F    +   RR  G GLGL++     +L GG V +SS+  EG T
Sbjct: 376 PADVIDRLFENFEQADNSATRRFGGTGLGLAMTRRLAHLMGGTVGVSSTPGEGST 430


>gi|196038119|ref|ZP_03105429.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196031389|gb|EDX69986.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 458

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIN 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++  + +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|83647357|ref|YP_435792.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635400|gb|ABC31367.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 935

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 2/228 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D +KN F+  VS+ELR+PLT I G   LL + +LG L  +  Q +    ++   LL 
Sbjct: 679 KRLDILKNEFISTVSHELRTPLTAINGSLALLDSGRLGLLPDQAKQMLHIAYSNCERLLR 738

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+LD+  +++G ++ ++    L DL+ E   +      + ++ +   +        A
Sbjct: 739 LINDLLDIQKIESGGLEFSFERADLRDLIEEALNANRQLAEKASVTLVFATPESPALVKA 798

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR RL Q+   ++SNA+ FS     V L        +  +V++ G  +P +    +F +F
Sbjct: 799 DRDRLRQVLDNLISNAIKFSPADEAVTLTLNAHAHYWEVAVQDQGPGVPPEFRNKIFQKF 858

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                   R   G GLGLSI    +  H G +   S      T   R+
Sbjct: 859 AQADSSDTRLKGGTGLGLSISREIVQRHHGQIGYHSEANCGATFYFRL 906


>gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
 gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
          Length = 559

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 11/228 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K  F+  +S+E+R+P+  +IG  DLL  S+L     +Q +Y   I  S+  L+N++
Sbjct: 165 AAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL---QDEQREYATIIRNSADALVNII 221

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + +++G M+L      L   + EV    + +  + N+ +    + ++ S V  D
Sbjct: 222 NDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYFIEDQIPSMVFGD 281

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+   ++SNA+ F+++G   ++    KA  +     F+VK+ G  I       +F
Sbjct: 282 MGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIGISSKKLDRLF 341

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
             F        RR  G GLGL+I +S + + GG + + S + EG T +
Sbjct: 342 KPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFV 389


>gi|323979073|gb|EGB74151.1| hsp90-like protein [Escherichia coli TW10509]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|320661959|gb|EFX29367.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|298487112|ref|ZP_07005162.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158355|gb|EFH99425.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 1003

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +G  +S+     +
Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 584

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 644

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A     + +F V ++G 
Sbjct: 645 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRINIDAVASENEVLFKVSDDGI 703

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 704 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 762

Query: 789 PSKE 792
           P  E
Sbjct: 763 PMHE 766


>gi|288933363|ref|YP_003437422.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288888092|gb|ADC56410.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 779

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 31/257 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L S+Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++   D GD 
Sbjct: 381 VLEPSLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGGGVNVRVRYDEGDI 431

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IPE     +F  +  V ++H G+   G G+GL++        GG +S++
Sbjct: 432 LHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDISVT 491

Query: 776 SSD-EGVT-TINCRIPS 790
           S   +G T T+    P+
Sbjct: 492 SQPGKGATFTLTVHAPA 508


>gi|82778524|ref|YP_404873.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae Sd197]
 gi|309785538|ref|ZP_07680169.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
 gi|81242672|gb|ABB63382.1| aerobic respiration sensor-response protein [Shigella dysenteriae
           Sd197]
 gi|308926658|gb|EFP72134.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568209|ref|ZP_04845620.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251842282|gb|EES70362.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1472

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 939  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELKERE--ELSPKGLQYVDLMEKNTNQMLQ 996

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN I        +     A
Sbjct: 997  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLPDEPIMVWA 1056

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D+ +L  +   ++SNA  F+ S GS  +     D+G   +  V++NG  IP++    +F 
Sbjct: 1057 DKDKLSIVIRNVISNAFKFTPSGGSIYVTTGLTDDGKSCYVRVEDNGVGIPQNKLSEIFE 1116

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA+    +G G+GL++ +  +NLH G +   S +
Sbjct: 1117 RFSQGENANNPHYQGTGIGLALSKEIVNLHHGIIRAESPE 1156


>gi|332704569|ref|ZP_08424657.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554718|gb|EGJ51762.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
          Length = 549

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 128/245 (52%), Gaps = 16/245 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           AE+AL +       A + K+ F+  +S+E+R+P+  +IG  +L L+ S+      +  +Y
Sbjct: 162 AEQALRQAKAEAEAASQAKSEFLAKMSHEIRTPINGVIGMAELALRASR----EPRILEY 217

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S T LL ++NDIL+L+ ++AG ++L      L   L +   ++A  +   ++R+
Sbjct: 218 LGLIKTSGTQLLRIINDILNLSKIEAGKVELEARPFDLRGDLEDTLATLAPSVQAKSLRL 277

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD------FIF 721
               DG + +  V D  RL Q+ + ++ NA+ ++ KG  T+ ++ A +  D       +F
Sbjct: 278 VHTVDGDIPAHLVGDSARLRQVITNLVGNAVKYTHKGLITLSVRLADEAADQSGGMRLLF 337

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V+++G  IP+D    +F  F  V++       G GLGL+I   ++ L  G +  + S+ 
Sbjct: 338 QVRDSGIGIPQDKLADIFESFTQVNSPEMINSAGTGLGLAISRHYVELMDGRI-WAESEP 396

Query: 780 GVTTI 784
           G  +I
Sbjct: 397 GTGSI 401


>gi|288942307|ref|YP_003444547.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897679|gb|ADC63515.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1436

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 119/227 (52%), Gaps = 13/227 (5%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ---YVEYISASSTILLNLVN 625
            K+ F+ ++S+E+R+PL  ++GF      +++G+  +  ++   +   I  S  +LL ++N
Sbjct: 844  KSEFLANMSHEIRTPLNAVLGF------AQIGARETDPNRARTFFRRILDSGQLLLGIIN 897

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADR 684
            DILD + ++AG + ++ + + L  ++      + T+  +  +R  +  D  L  +F+ D 
Sbjct: 898  DILDFSKIEAGKLDIHDAEVDLRAVIERSVDLLTTRAKDKGLRFSLEEDPNLPATFMGDD 957

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
             RL Q+ + +LSNA+ F+ +G+ V     R+ G  +FSV++ G  + ED   ++F  F  
Sbjct: 958  LRLSQVLANLLSNAVKFTDQGA-VTFGIRREEGWIVFSVEDTGIGMHEDYLANLFQPFEQ 1016

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  RR  G GLGL+I +  + L GG +   S     T    R+P
Sbjct: 1017 ADGSITRRYGGSGLGLAISKRLVELMGGEIRAWSRFGEGTRFETRLP 1063


>gi|237721170|ref|ZP_04551651.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229450005|gb|EEO55796.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 644

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 5/233 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q  
Sbjct: 399 LKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQQS 456

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     +  +
Sbjct: 457 YYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSENQ 516

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNG 727
               +  +    V D QR+ Q+   +LSNA  F+  G  T+      +    +FSV + G
Sbjct: 517 FLFTTSFESFRMVTDVQRMQQVMINLLSNANKFTKCGKITLDFSVNGETQMAVFSVTDTG 576

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             IP++    VF RF       Q  G GLGLSI +  ++   G + I     G
Sbjct: 577 CGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTG 627


>gi|237713651|ref|ZP_04544132.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406251|ref|ZP_06082800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643736|ref|ZP_06721535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810105|ref|ZP_06768776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446373|gb|EEO52164.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354954|gb|EEZ04045.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640920|gb|EFF59139.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442709|gb|EFG11505.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 533

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 11/241 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL  S 
Sbjct: 283 VITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLVESD 342

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               + K+ Q YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ ++
Sbjct: 343 ----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRN 398

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
              K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  ++  +   ++
Sbjct: 399 YDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAES 457

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  F+V + G  I  D    VF+RFV  N+     +G GLGLSI  S I   GG +   
Sbjct: 458 NEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF---SKGTGLGLSICRSIIEHLGGTIGAE 514

Query: 776 S 776
           S
Sbjct: 515 S 515


>gi|227072259|gb|ACL81480.3| ethylene receptor [Dimocarpus longan]
          Length = 740

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+    EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLELVTFNLHAAFREVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + I +     L  + V D +RLLQ    ++ NA+ FS +GS  I       ++
Sbjct: 432 PIASVKKLMITLNLAPDLPEYAVGDEKRLLQTLLNVVGNAVKFSKEGSVSITAFVAKSES 491

Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD+   DF              VK++G+ I P+D+ K +F +F  N     R   G GL
Sbjct: 492 LRDSRAPDFFAMPSENHFYLRVQVKDSGTGINPQDIPK-LFTKFAQNQTLATRNSGGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 551 GLAICKRFVNLMEGHIWIESEGLG 574


>gi|220908096|ref|YP_002483407.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864707|gb|ACL45046.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1099

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 193/435 (44%), Gaps = 41/435 (9%)

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQ 436
           FS+ K        W   N   + +    +P G   TI + E+++ +   E +  +    +
Sbjct: 442 FSLEKRLRQKSGQWRWAN---VTISAVQHPDGFPCTIGVIEDISERKQAEAQRQSADSFR 498

Query: 437 GETIDHLSEGVAVFG-----PDGRIKLSNPAFRSL--WKTEE-NRLS------PGTHIRN 482
              ID  +EG+ +       P  R  + N    SL  +  EE NRL       P + IR 
Sbjct: 499 RALIDRAAEGICMCHGIEEFPYVRFTVWNQRMVSLTGYTMEEINRLGWYQTLYPDSEIRE 558

Query: 483 IAATCSRYYNESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQT 538
             A   R      G DL A    IT  D E++ +           +  S+IP    +   
Sbjct: 559 --AAIERMSRMRQGEDLMAEEWTITRADGEQRVV----------CISTSLIPGVEGDYHA 606

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    ++T     E A+ +  EA   A++ K++F+ H+S+ELR+PL  I+GF  L++   
Sbjct: 607 LAVMQDITQRKHTELAMQQAKEAAEAANQAKSAFLAHMSHELRTPLNAILGFAQLMERDT 666

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L  L + Q + +  I+ S   LL L+ND+L+++ ++AG + L+ +   L+ LL  +++  
Sbjct: 667 L--LTTAQKESLSIINRSGEHLLGLINDVLEMSKIEAGRIVLHKAQFDLHRLLQTLQEMF 724

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +     + + + +S       ++D  +L Q+   +LSNA+ F+  G   +     D+ 
Sbjct: 725 RVRATAKGLVLTMNLSPSLPQLIISDEGKLRQVLINLLSNAVKFTDVGHITLTANYADDP 784

Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D    F V++ G  I       +F  FV +      + G GLGL+I   F+ L GG + +
Sbjct: 785 DPRLWFQVEDTGRGIAAAEQHHLFEPFVQTTTGANAQEGTGLGLTISHQFVQLLGGELRV 844

Query: 775 SSSDEGVTTINCRIP 789
            S     +T +  +P
Sbjct: 845 ESEVNRGSTFSFDLP 859


>gi|159901279|ref|YP_001547526.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894318|gb|ABX07398.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 810

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 129/248 (52%), Gaps = 7/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +T+S R   AL  +++ L+++++++    Q V ++L++PLT II + DLL+     +L 
Sbjct: 565 GITNS-RLYSALQTEHQQLQRSEQLREQMNQMVVHDLKNPLTVIINYLDLLRRQ---ALP 620

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q + VE    SS  L+ LV+D+LD A +  G M +N   + +  LL+ V   + +   
Sbjct: 621 ESQRELVEGARRSSRTLVGLVSDLLDTARLQEGHMSINREHVPIAPLLHNVANELRSWAE 680

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +    I + +D +L + + D   + ++ S +LSNA+  +   + + L A + +    F V
Sbjct: 681 QEAKIISIQADPELYATI-DGDLMRRVLSNLLSNAIKHTPIQTEIKLIAYQADSQITFQV 739

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +NG  IPE +  S+F+RF  ++  +  ++R  GLGL   +  +  H G + + S+    
Sbjct: 740 ADNGPGIPEALQASLFDRFTILNEQNHTRQRSTGLGLYFCKLAVEAHEGEIGVVSNSTTG 799

Query: 782 TTINCRIP 789
           T     +P
Sbjct: 800 TIFTITMP 807


>gi|30026188|gb|AAO44976.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
 gi|30026194|gb|AAO44979.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
 gi|30026196|gb|AAO44980.1| ethylene receptor [Arabidopsis lyrata subsp. petraea]
          Length = 532

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 152 ESMRARNLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 211

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 212 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 268

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 269 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 328

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
              DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 329 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLAI 387

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 388 SKRFVNLMEGNIWIESDGLG 407


>gi|21242798|ref|NP_642380.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108282|gb|AAM36916.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1127

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N  + 
Sbjct: 729 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRG 785

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I  S+     +++D+LD++ + +G ++L      +  L+  V + +        I
Sbjct: 786 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPAALTRKI 843

Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +++ +  DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++
Sbjct: 844 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVTMDVEDERLRLCVQD 902

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            G  I  D    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 903 TGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 959


>gi|330504152|ref|YP_004381021.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328918438|gb|AEB59269.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 916

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K+ F+  +S+E+R+PL  ++G   LL+ + +   +  Q  YV+ IS+S + L+ ++ND
Sbjct: 406 QAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPM---DRSQRFYVDTISSSGSSLMAVIND 462

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           ILD A +++G + L      L D+++E       +  +  +R+ V + +G       D  
Sbjct: 463 ILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRLRLYVSLENGVPRRIQGDPT 522

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNR 741
           RL Q+   +LSNA+ F+++G   +  + R +       +F+V ++G  I E     +F  
Sbjct: 523 RLKQVLMNLLSNALKFTAEGHVAVSVSRRSDSHGKPHLVFAVSDSGIGISEQALAQLFES 582

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        RR  G GLGL+I +  + + GG + + S+    T     IP
Sbjct: 583 FAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTLGQGTRFAFDIP 632


>gi|238791234|ref|ZP_04634873.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
 gi|238729367|gb|EEQ20882.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
          Length = 911

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 13/229 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 277 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 332

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + +++      
Sbjct: 333 CIINDVLDFSKLEAEKLILEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQL 392

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736
           V D  RL QI + +L NA+ F+ +G+  IL A +   D     +  + + G  I E    
Sbjct: 393 VGDAMRLQQIVTNLLGNAIKFTEQGNIDILLAVQAKTDQQVTLVVEIHDTGIGISESQQA 452

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
            +F  F        RR  G GLGL I E  +   GG +S  S  D G T
Sbjct: 453 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVDRGST 501


>gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 645

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 130/254 (51%), Gaps = 11/254 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   +A++AL    +    A++ KN F+ ++S+E+R+PL  I G   +L ++    LN
Sbjct: 247 DITLQKQAQQALLNAKKDAEAANQSKNEFLANMSHEIRTPLNGIEGMMQMLLST---PLN 303

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+Q +++E    +S  +  L++DILDL+ ++AG   ++  T  L D+ + +   +  K  
Sbjct: 304 SEQQKFIEMGHQASRRMTELLSDILDLSRLEAGREDVSKRTFNLKDVCDSLWDLLGIKSR 363

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNG 717
           E  I +   +S     + + D   + QI   ++ NA+ F+  G        + ++ +D  
Sbjct: 364 EKGIPLTFNLSPSLPDTLMGDSTMVRQILFNLVGNALKFTEHGQVTLDIHPLPQSHQDQL 423

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             +F+V + G  IP+D    +F  F  V+ +   +  G GLGL++      L GG +S+ 
Sbjct: 424 QVLFTVSDTGPGIPDDKQDRIFKPFDMVNGSLTRKHEGKGLGLTVTHRLAKLMGGTISVD 483

Query: 776 SSDEGVTTINCRIP 789
           S++   T+I   +P
Sbjct: 484 SAEGQGTSIYVTLP 497


>gi|224539076|ref|ZP_03679615.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519321|gb|EEF88426.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 125/241 (51%), Gaps = 9/241 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E  L +  +   +A+ +K +F+ ++S+E+R+PL  I+GF+ +L  ++     +++ ++
Sbjct: 183 KLESDLRKAKDKAEEANRLKTAFLANMSHEIRTPLNAIVGFSSILADTED---IAEKKEF 239

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIR 668
              I+ ++ +LL +V+DILD++ ++AG + L+ +   L+DL+ E       K     +IR
Sbjct: 240 CNLINHNNALLLKIVDDILDISKIEAGYIDLHPTWFCLSDLIMESATEYRMKAAGRLDIR 299

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I     G +     D +R+ QI +  LSNA+  + +G   I     + G  I  V + G 
Sbjct: 300 IHKPGQGYMAEL--DTKRVKQILNNFLSNALKHTQEGYIDITYGVTEQGIEI-KVTDTGC 356

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP+D    +F RF       Q  GVGLGL I +S     GG + ++S     TT+   +
Sbjct: 357 GIPQDKLPVIFERFEKVDSFTQ--GVGLGLPICKSIAECMGGSIGLTSEAGVGTTVWVTL 414

Query: 789 P 789
           P
Sbjct: 415 P 415


>gi|170741231|ref|YP_001769886.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195505|gb|ACA17452.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 873

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 13/224 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+E+R+PLT ++G+ DLL       L ++Q++ V  I  +   L  +V+D+L
Sbjct: 493 KTDFLATMSHEIRTPLTAVLGYADLLMARS--DLEAEQARLVGRIVTAGEALRTIVDDVL 550

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D + ++AG + L      L DL+ E    +  +     + I V I  G     V D  RL
Sbjct: 551 DFSRIEAGRVDLAPRPFSLADLIEEALALVRPEADRKGLPIAVAIEPGLPPRLVGDVDRL 610

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFNR 741
            QI   +L+NA+ F+  GS + L  ARD          + SV++ G  IP D    +F R
Sbjct: 611 RQILLNLLNNAVKFTPAGS-IGLAVARDPTGPAEGRGLLISVRDTGIGIPADKHARLFER 669

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           F  V  + + Q  G GLGL+I    +    G + + S + EG T
Sbjct: 670 FSQVDGSIQRQYGGTGLGLAISRRLVEAMHGRIGVESREGEGST 713


>gi|332752371|gb|EGJ82761.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           4343-70]
 gi|333000305|gb|EGK19888.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-218]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|312891906|ref|ZP_07751410.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311295639|gb|EFQ72804.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1082

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  +A  AL    E   K+   K+ F+  +S+E+R+P+  +IG T+LL         
Sbjct: 688 DITDIKKAREALIIAKENAEKSSRFKSEFLSIMSHEIRTPMNAVIGTTNLLLQDNPAP-- 745

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y+  +  SS  LL L+NDILD   ++AG ++L  +   +N L   + QS   K  
Sbjct: 746 -RQLEYLNTLRFSSNNLLELINDILDYNKIEAGKLELYKTPFNINKLAQNILQSFKNKAE 804

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNG 717
            N+  +++  D ++  + + D+ RL Q+ + +LSNA+ F+  G TV LK        D  
Sbjct: 805 ANSSYLELKLDDRIPANLIGDQLRLGQVLNNLLSNAVKFTRDG-TVFLKLELEQLRYDKV 863

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F +++ G  I  +    +F+ F    N+ +    G GLGL+I +  I LH   + + 
Sbjct: 864 TIKFIIEDTGIGISPENIDKIFDPFTQEYNSTQSDYGGTGLGLAITKRLIELHNSTIKLV 923

Query: 776 SS 777
           S+
Sbjct: 924 SN 925


>gi|293372871|ref|ZP_06619245.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292632160|gb|EFF50764.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 250

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 131/257 (50%), Gaps = 32/257 (12%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + + A R L EK E       +K SF+ ++S+E+R+PL +I+GF ++L     G  + ++
Sbjct: 13  EELEAARLLAEKAE-------LKQSFLANMSHEIRTPLNSIVGFANILALED-GLSSVER 64

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS----IATKM 662
            +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++    + +L++++  +    IA ++
Sbjct: 65  EEYIGAINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIAPRL 124

Query: 663 ----HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
                 +NI +++           DR+RL+Q+ +  L+NA  F+  G   +      D G
Sbjct: 125 EFLKEVDNIPLEI---------NVDRERLIQVLTNFLNNASKFTETGYIKLGYIYLPDEG 175

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS- 776
                V++ G  IP +  + +F+RF       Q  G GLGLSI +  I   GG + + S 
Sbjct: 176 HVRIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQVIIEKLGGRIELKSE 233

Query: 777 ---SDEGVTTINCRIPS 790
                     + CR+ S
Sbjct: 234 VGKGSRFTVILPCRVVS 250


>gi|182412731|ref|YP_001817797.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839945|gb|ACB74197.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 876

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 126/284 (44%), Gaps = 36/284 (12%)

Query: 526 LEYSIIPLPN-AQTMLTFVNV----TDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L  +I P+ N A  + +FV V    T+  + E  L E  E     D  K  F+  +S+E+
Sbjct: 311 LRAAITPVKNRAGEIRSFVGVFEDMTEIRQTEALLREAKERAEAGDRAKGQFLATMSHEV 370

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF  LL  ++   L  +Q +YVE I  SS  L+ L  DILD A +++G +KL
Sbjct: 371 RTPLNGIVGFASLLLETE---LTPEQLEYVETIRTSSETLIQLTGDILDYARIESGRLKL 427

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
                   + +       AT      +  +  I D    + VAD  RL Q+   +++NA+
Sbjct: 428 EPQPCDPRECVENALDLAATLALPKGVELLHWIDDTVPAAIVADVGRLRQVIVNLVNNAV 487

Query: 700 DFSSKGSTVI------------------LKAARDNGD-------FIFSVKNNGSSIPEDM 734
            F+  G   +                  L +AR+  D         FSV++ G  I    
Sbjct: 488 KFTPTGEVAVDVRVVASSPAPETADAEALPSARETADAGEASCTLEFSVRDTGIGIAPAH 547

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +F  F        RR  G GLGL+I ++ + L  GH++ +S
Sbjct: 548 HPKIFRPFSQVDDSTTRRYGGTGLGLAICKNLVGLMNGHITFTS 591


>gi|167839922|ref|ZP_02466606.1| two-component hybrid sensor and regulator, putative [Burkholderia
           thailandensis MSMB43]
          Length = 1084

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 15/255 (5%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNII 588
           L  A++ LT  N+ D  RA  +L E+       L++A+  K+ F+ ++S+ELR+PL  I+
Sbjct: 581 LRRARSELTNANL-DLQRAHDSLEERVRQRTRELQEANRAKSIFLANMSHELRTPLNAIL 639

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+    +     +   +Q +    I  S   LL L+ DILDLA ++AG + L      L+
Sbjct: 640 GYAQWFRRDA--AAGERQVRAASIIKQSGEHLLMLITDILDLAKIEAGKLDLCPGPAGLD 697

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG-- 705
            +L+ V   I  K  E  +   + +   L   V  D +RL Q+   +L NA+ F+S+G  
Sbjct: 698 GVLSSVMDIIRVKSEEKGLACVLDAASDLPPSVWIDDKRLRQVLLNLLGNAVKFTSRGRV 757

Query: 706 --STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
                +L+ A +     F V++ G  I  D   S+F+ F   A   Q R  G GLGLSI 
Sbjct: 758 ELRVSLLQPADELARVRFEVRDTGVGIAHDRLTSIFDPF-EQAGEAQSRAGGTGLGLSIS 816

Query: 762 ESFINLHGGHVSISS 776
              + L GG + + S
Sbjct: 817 RQLVRLMGGEIEVES 831


>gi|158334365|ref|YP_001515537.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158304606|gb|ABW26223.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 3073

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            A+ E  E    A+E K+ F+ ++S+ELR+PL  I+G+  +L+ S+  SL++K+ + V+ I
Sbjct: 2595 AMAESKEKADAANEAKSLFLANMSHELRTPLNGILGYAQILRRSE--SLSNKELEGVDTI 2652

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                + LLNL+NDILD++ ++A  ++L      L  LL  V +    K  +  I+     
Sbjct: 2653 YQCGSHLLNLINDILDISKIEALKLELTPKAANLPYLLQTVVEMCKVKADQKGIQFNYQP 2712

Query: 674  DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGS 728
              +L   V  D +RL Q+   +L NA+ F+  GS   +      +       F V + G 
Sbjct: 2713 SSQLPQQVEVDDKRLQQVLLNLLGNAVKFTDHGSVTFIVDVSPLSEQQVSISFRVIDTGV 2772

Query: 729  SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             I E     +F  F  V + H+ Q  G GLGL+I +  + L G  + ++S  +
Sbjct: 2773 GIAEQDLVKLFQSFKQVGDQHK-QAEGTGLGLAISQRIVRLMGSEIHVTSQPQ 2824


>gi|153812069|ref|ZP_01964737.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174]
 gi|149831724|gb|EDM86810.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174]
          Length = 986

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 147/264 (55%), Gaps = 19/264 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   + T   +  +AL+E   A   A++ K++F+ ++S+++R+P+  IIGFT L     
Sbjct: 444 ILVMSDRTSDWKMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTL----A 499

Query: 599 LGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + +++ K+    Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+++L+++K 
Sbjct: 500 VSNIDDKKRVQDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKT 559

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            I+ ++H   + + + + D        D+ RL Q+   +LSNA+ F+  G TV ++  + 
Sbjct: 560 IISGQIHAKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQC 619

Query: 716 NGD------FIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFI 765
           +G       +   VK+NG  + ++  + +F+ F     S   R Q  G GLG++I ++ +
Sbjct: 620 HGTQKGSELYEIRVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQ--GTGLGMAITKNIV 677

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
           ++ GG + + +  +  T    R+P
Sbjct: 678 DMMGGTIEVQTEQDKGTEFIVRLP 701


>gi|15803750|ref|NP_289784.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 EDL933]
 gi|15833343|ref|NP_312116.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751616|ref|ZP_02776638.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754192|ref|ZP_02779199.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763747|ref|ZP_02788754.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769066|ref|ZP_02794073.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777265|ref|ZP_02802272.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781354|ref|ZP_02806361.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786096|ref|ZP_02811103.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|168800924|ref|ZP_02825931.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208808181|ref|ZP_03250518.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813912|ref|ZP_03255241.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820710|ref|ZP_03261030.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397926|ref|YP_002272680.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327107|ref|ZP_03443190.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795159|ref|YP_003079996.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14359]
 gi|261228221|ref|ZP_05942502.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255077|ref|ZP_05947610.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK966]
 gi|17366312|sp|P58363|ARCB_ECO57 RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|12517831|gb|AAG58344.1|AE005549_1 aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase, sensor for arcA [Escherichia coli
           O157:H7 str. EDL933]
 gi|13363562|dbj|BAB37512.1| aerobic respiration sensor-response protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767463|gb|EDU31307.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014362|gb|EDU52484.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|189001033|gb|EDU70019.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358652|gb|EDU77071.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361737|gb|EDU80156.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366120|gb|EDU84536.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373850|gb|EDU92266.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|189376853|gb|EDU95269.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208727982|gb|EDZ77583.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735189|gb|EDZ83876.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740833|gb|EDZ88515.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159326|gb|ACI36759.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|209757940|gb|ACI77282.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757942|gb|ACI77283.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757946|gb|ACI77285.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|217319474|gb|EEC27899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594559|gb|ACT73920.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. TW14359]
 gi|320189563|gb|EFW64222.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. EC1212]
 gi|326337911|gb|EGD61745.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1125]
 gi|326347480|gb|EGD71205.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1044]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|323936096|gb|EGB32390.1| hsp90-like protein [Escherichia coli E1520]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|320157394|ref|YP_004189773.1| aerobic respiration control sensor protein arcB [Vibrio vulnificus
           MO6-24/O]
 gi|319932706|gb|ADV87570.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus
           MO6-24/O]
          Length = 780

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   L  +Q +Y
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR---LTDEQRKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +    +L   +  D  RL Q+   ++SNAM F+ +G  V+  ++    DF   I  V++
Sbjct: 381 DLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTVSSEVEEDFATIIIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++    IN+  G +++ SS+EG  
Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDITV-SSEEGFG 499

Query: 783 ---TINCRIP 789
              TI+  +P
Sbjct: 500 STFTISIHVP 509


>gi|237706038|ref|ZP_04536519.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
 gi|226899078|gb|EEH85337.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|115375443|ref|ZP_01462704.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367570|gb|EAU66544.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 965

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 3/251 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF     +VRA     ++  AL + D  K +F  +VS+E R+PLT ++G  +   +S   
Sbjct: 296 TFTTAVSNVRAYEQEQQRAAALAEIDRAKTAFFSNVSHEFRTPLTLMLGPLEDSLSSHSE 355

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q +  + I  ++  LL LVN +LD + ++AG +K  Y    L  L  +V  +  +
Sbjct: 356 PLTPSQRERQQLIHRNALRLLKLVNTLLDFSRLEAGRVKATYRATNLPKLTADVASAFRS 415

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            M +  +  +V     L     D     +I   ++SNA  F+  G  V +K  +  G   
Sbjct: 416 AMEKAGLNYRVTVPDSLEPVYVDHDMWEKIVLNLISNAFKFTFHGE-VEVKLTQLEGRVR 474

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V++ G+ +PE     +F RF  V         G G+GL+++   + +HGG + + S +
Sbjct: 475 LTVRDTGTGVPEAELPRLFERFHRVETTQGRTFEGTGIGLALIMELVKMHGGILGVQSVE 534

Query: 779 EGVTTINCRIP 789
              +  +  +P
Sbjct: 535 NRGSAFHVELP 545



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 133/282 (47%), Gaps = 11/282 (3%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R   +  +E L     +Y + P  +A+ +L    + ++VR  R  +E+    R+  E++ 
Sbjct: 689 RAGEEARIEGLQAGANDYLVKPF-SARELL--ARIENAVRLARERSERERLARERGELEQ 745

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             +  VS++LR+P++ I+  T  L   ++G+L  + ++ V  I AS+   + ++ D+LD 
Sbjct: 746 QLIGIVSHDLRNPISAILMSTSFL--FRMGTLEERAAKVVTRIQASAERAMRMIRDLLDF 803

Query: 631 ATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
                 G +++      L  +     + +     E  +  + +   + G +  D  RL Q
Sbjct: 804 TQARLGGGLRIERRPAELQHIAWLAVEEVKLAHPERKVLFEAVGV-QTGEW--DDDRLFQ 860

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + + +++NA+ +S   ++V ++      +    V N G  I +++   +F       H G
Sbjct: 861 LLTNLITNAVKYSPSSTSVTVRLTGTQTEAQIDVHNEGEPISQELQARLFMPMQQGGHGG 920

Query: 750 QRRG--VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            R G  +GLGL IV   +  HGG +++ S+ E  TT   R+P
Sbjct: 921 DRAGRSIGLGLYIVSQIVRAHGGAINLLSTPEVGTTFTVRLP 962


>gi|91212635|ref|YP_542621.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|117625502|ref|YP_858825.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215488526|ref|YP_002330957.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218560280|ref|YP_002393193.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           S88]
 gi|306816448|ref|ZP_07450580.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|312968451|ref|ZP_07782660.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|331649010|ref|ZP_08350098.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
 gi|91074209|gb|ABE09090.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|115514626|gb|ABJ02701.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215266598|emb|CAS11037.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O127:H6 str. E2348/69]
 gi|218367049|emb|CAR04820.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli S88]
 gi|281180252|dbj|BAI56582.1| aerobic respiration sensor-response protein [Escherichia coli SE15]
 gi|294492786|gb|ADE91542.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IHE3034]
 gi|305850013|gb|EFM50472.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|307625191|gb|ADN69495.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UM146]
 gi|312286669|gb|EFR14580.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|315288991|gb|EFU48389.1| PAS domain S-box [Escherichia coli MS 110-3]
 gi|323957642|gb|EGB53356.1| hsp90-like protein [Escherichia coli H263]
 gi|324008722|gb|EGB77941.1| PAS domain S-box [Escherichia coli MS 57-2]
 gi|330909262|gb|EGH37776.1| aerobic respiration control sensor protein arcB [Escherichia coli
           AA86]
 gi|331042757|gb|EGI14899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 951

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 11/228 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A+++K  F+ ++S+E+R+PL  IIGF  LL  S   +L  KQ  Y+  I +SS +LL 
Sbjct: 277 QQANQVKTEFLANMSHEIRTPLNGIIGFARLLARS---NLTKKQEDYISTIMSSSQVLLT 333

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           ++ND+LD   ++AG + L+  +  L + + EV   +       N+ +  +    +    V
Sbjct: 334 IINDVLDFCKIEAGKLMLDNRSTNLRESIEEVLTMLDPASSAKNLEVVSLFFADVPEQLV 393

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFI---FSVKNNGSSIPEDMCKS 737
            D  RL Q+ + ++SNA+ F+++GS VI     +  G+ +    SV + G  + +   K+
Sbjct: 394 FDPLRLKQVLTNLISNAIKFTNEGSVVIRTMIEQQQGNKVTVRVSVTDTGIGLSKTQQKA 453

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           +F  F        R   G GLGL I +  +   GG + + S  DEG T
Sbjct: 454 LFQAFAQADSSTAREFGGTGLGLVISKRLVEQMGGDIGLESKKDEGST 501


>gi|323951271|gb|EGB47146.1| hsp90-like protein [Escherichia coli H252]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|323691648|ref|ZP_08105910.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323504282|gb|EGB20082.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 374

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 123/240 (51%), Gaps = 6/240 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VN+   +   R L +K    R+A+  KN  + +V+++LR+PLT+IIG+ +LL + K+   
Sbjct: 117 VNLNKMMEDIRRLMDKE---REAERTKNELITNVAHDLRTPLTSIIGYLELL-SGKVQIP 172

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q +Y++   A S  L  L+ D+     ++ G M ++   + +  LL+++ +      
Sbjct: 173 QEMQKKYIDIAYAKSKRLEKLIEDLFGFTKMNYGKMTMHVGKVDVVKLLSQLLEEFYPSF 232

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N+  ++ S+       AD   L ++F  +++NA+ + + G  V++K          S
Sbjct: 233 VDKNLSYELQSNVPGKVITADGNLLARLFDNLINNAIKYGADGKRVLVKIQVTEPTVTVS 292

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V N G  IP D    VFN+F  V  +      G GLGL+I ++ +++HGG + ++S   G
Sbjct: 293 VTNYGYVIPADELPLVFNKFYRVEQSRSTNTGGTGLGLAISKNIVDMHGGSIQVTSDLNG 352


>gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 576

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 155/335 (46%), Gaps = 25/335 (7%)

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +G+ V     R+ L NPA   L   +  + S G  + +I             + L  A+ 
Sbjct: 248 DGIIVVDAQRRVMLINPAACKLVGADSEK-SAGKKLISIIRN----------YQLDEAVK 296

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            +  +     +  + L  + +L+  I P+ +         ++ SV   R +TE    L+ 
Sbjct: 297 KTLKEGSPYFKEIVLLPREQILKVHITPIKDRAG-----RISGSVIVMRDITE----LKH 347

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +++++ F+ +VS+ELR+PLT+I GF + L           + +++  I A +  L  L+
Sbjct: 348 LEKLRSEFLANVSHELRTPLTSIKGFVETLLEGAYKDPGLAK-RFLSIIDAEAGRLYRLI 406

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N+++DL+ ++   +KL    +   +L+NEV      ++ E  ++        L    AD 
Sbjct: 407 NNLMDLSKIETNQLKLRIEDVSAAELINEVIIIFENRLKEKGLKFSTDIPKDLPKVKADP 466

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF- 742
             L Q+F  +L NA+ ++  G  V ++ A   GD + F V + G  IPE+    VF RF 
Sbjct: 467 DWLRQVFINLLDNAIKYTQSGGRVWIE-AEPKGDVVEFRVCDTGIGIPEEDLPRVFERFY 525

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V  A   +  G GLGL+IV+  +   GG + + S
Sbjct: 526 RVDKARSPEMGGSGLGLAIVKHIVRAFGGDIRVES 560


>gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1831

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 14/233 (6%)

Query: 561  ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            A++ ADE    K+ F+ ++S+E+R+P+  IIG + L++ +    LN KQS YV  I  S+
Sbjct: 999  AVKTADEATRAKSDFLANMSHEIRTPMNAIIGMSYLIQQT---DLNRKQSDYVTKIQNSA 1055

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL ++NDILD + ++A  ++L  +   LND  + + Q IA K  +  + + +  +  L
Sbjct: 1056 ESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLVQIIAHKTQQKGLELLIDIEPNL 1115

Query: 678  G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPE 732
                + D  RL QI   + +NAM F+ +G  +I   A +  +      F+VK+ G  +  
Sbjct: 1116 PVDLIGDPLRLGQILINLANNAMKFTDEGEIIIKARAVEQHEQQVTIEFAVKDTGIGMTP 1175

Query: 733  DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            +    +F  F        R+  G GLGL+I ++   L  G + + SS  EG T
Sbjct: 1176 EQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELMAGKIWVESSYGEGST 1228


>gi|254442776|ref|ZP_05056252.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257084|gb|EDY81392.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1251

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 132/248 (53%), Gaps = 16/248 (6%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R L +      ++D++K+SF+ ++S+E+R+P+  IIGF++LL   +  +   ++ +Y   
Sbjct: 858  RELEKAKLQAEESDQLKSSFLANMSHEIRTPMNAIIGFSNLL--CQRDNDPDEEEEYSNI 915

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-----I 667
            I ++ T L +L++DILDL+ ++AG +++      LN L+ E+      ++ + +     +
Sbjct: 916  IQSNCTSLSHLIDDILDLSIIEAGQLQVKQEDFDLNSLMRELDNVFRAQLKQESREHLAL 975

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSV 723
            R++     +    + DR RL QI + ++SNA+ F+S G       I  AA   G   F V
Sbjct: 976  RVEEHLGERSSYILCDRDRLRQILTNLISNALKFTSTGYVSARYTIDPAA---GKIRFEV 1032

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++ G  I      S++ +F  + +  +   RG GLGL+I ++ + L GG +++ S+    
Sbjct: 1033 EDTGIGIEAKHLDSIWVQFRKIEDHTKQLFRGTGLGLAITKTLVQLLGGSITVQSTPNEG 1092

Query: 782  TTINCRIP 789
            +     IP
Sbjct: 1093 SCFKFEIP 1100


>gi|167746744|ref|ZP_02418871.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662]
 gi|167653704|gb|EDR97833.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662]
          Length = 811

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 21/262 (8%)

Query: 544 NVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +VT+    +R LTE+  AL+       +A++ K  F+  +S+E+R+P+  IIG T    T
Sbjct: 263 DVTELREIQRKLTEQAAALKDALTVAEQANKAKTEFLSRMSHEIRTPMNAIIGMT----T 318

Query: 597 SKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                ++ +Q  S  +E I  SS  L+ L+NDILD++ +  G MK+ +    L  ++  V
Sbjct: 319 IAAAYIDDRQRVSDCLEKIGYSSKHLMTLINDILDMSKISEGKMKIAHEPFQLETVVESV 378

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--K 711
              +  +  +  +   V ++D    S V D  RL QI   +LSNA+ F+ +G ++ +  +
Sbjct: 379 SSIVYPQASDKGLVFTVPLADLTDTSLVGDSLRLNQILLNLLSNALKFTPEGGSIRMEIR 438

Query: 712 AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRR-GVGLGLSIVESFIN 766
             + N D +   F+V + G  + ++   ++F+ F   +A   Q+  G GLG+SI ++ + 
Sbjct: 439 QIKKNSDTVCLRFTVSDTGIGMADEFISNLFHPFEQEDASTSQKYGGTGLGMSITKNLVT 498

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L GG +S+ S     TT    +
Sbjct: 499 LMGGTISVKSKPGKGTTFTVEL 520


>gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 788

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 123/243 (50%), Gaps = 10/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            + ++T    AE A+    E   +A + K+ F+ ++S+E+R+P+  IIG + L   +KL 
Sbjct: 29  AYQDITAVKAAEDAIRAAKEIAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTKL- 87

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + KQ  Y+E +  S   LL ++NDILD + ++AG M +      L D+++ +   +  
Sbjct: 88  --DKKQRNYIEKVHRSGENLLGIINDILDFSKIEAGKMTMESIDFRLEDVMDNLANLVGL 145

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
           K  +  + +   ++     + + D  RL QI   + +NA+ F+ KG  ++    ++ + D
Sbjct: 146 KAEDRGLELLFNVAPDIPSALIGDPLRLGQILINLGNNAVKFTEKGEIIVGAELVERSED 205

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +  F V+++G  +  + C  +F  F        R+  G GLGL+I ++ + L  G + 
Sbjct: 206 QAELHFWVRDSGIGMTPEQCGKMFKSFSQADTSTTRKYGGTGLGLAISKTLVELMDGRIW 265

Query: 774 ISS 776
           + S
Sbjct: 266 VES 268


>gi|294498311|ref|YP_003562011.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348248|gb|ADE68577.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 917

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 131/256 (51%), Gaps = 16/256 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L EK   L    + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +Y 
Sbjct: 487 AKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEMLEENAAKTLSEDEEEYA 546

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V++G + +  + + +++L ++++++ +    +  +++K
Sbjct: 547 RIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPDQIERNFSHVAEQKKVQLK 606

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGD-- 718
           +     + + +  D +R  QI   +LSNA  F+  GS  +         L  A    D  
Sbjct: 607 INKAQDVPNIIHTDEKRFQQIVKNLLSNAFKFTESGSVTVSIQRVADHRLTTAMRTVDTD 666

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                +V + G  IP++  + +F  F        R+  G GLGLSI   F  L GG +S+
Sbjct: 667 CWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTGLGLSICSEFAKLLGGWISL 726

Query: 775 SSSDEGVTTINCRIPS 790
           SS     +T    +PS
Sbjct: 727 SSEVGKGSTFTLYLPS 742


>gi|24114498|ref|NP_709008.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 301]
 gi|30064547|ref|NP_838718.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 2457T]
 gi|49176326|ref|YP_026207.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|82545553|ref|YP_409500.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           Sb227]
 gi|89109973|ref|AP_003753.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. W3110]
 gi|110807075|ref|YP_690595.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           5 str. 8401]
 gi|157159325|ref|YP_001464688.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|170018540|ref|YP_001723494.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ATCC 8739]
 gi|170082744|ref|YP_001732064.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170683438|ref|YP_001745482.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188492706|ref|ZP_02999976.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|191168636|ref|ZP_03030418.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|193065369|ref|ZP_03046440.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|193070312|ref|ZP_03051255.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194429137|ref|ZP_03061667.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194439214|ref|ZP_03071295.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209920685|ref|YP_002294769.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SE11]
 gi|218555780|ref|YP_002388693.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI1]
 gi|218696915|ref|YP_002404582.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           55989]
 gi|218701979|ref|YP_002409608.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI39]
 gi|218706830|ref|YP_002414349.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMN026]
 gi|238902312|ref|YP_002928108.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|253771956|ref|YP_003034787.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038375|ref|ZP_04872433.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|256018871|ref|ZP_05432736.1| aerobic respiration control sensor protein ArcB [Shigella sp. D9]
 gi|260857337|ref|YP_003231228.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|260869961|ref|YP_003236363.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|291284584|ref|YP_003501402.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406819|ref|ZP_06650745.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|293412581|ref|ZP_06655304.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293416639|ref|ZP_06659278.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|293449543|ref|ZP_06663964.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|298382560|ref|ZP_06992157.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|300817535|ref|ZP_07097751.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300897978|ref|ZP_07116354.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300904402|ref|ZP_07122250.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300926045|ref|ZP_07141867.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300929906|ref|ZP_07145348.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300938126|ref|ZP_07152900.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300948865|ref|ZP_07162930.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|301025888|ref|ZP_07189375.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|301326357|ref|ZP_07219721.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301644924|ref|ZP_07244893.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|307139896|ref|ZP_07499252.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|307313085|ref|ZP_07592711.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309793789|ref|ZP_07688215.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|331643908|ref|ZP_08345039.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331654814|ref|ZP_08355814.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331670037|ref|ZP_08370882.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331679289|ref|ZP_08379961.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331684857|ref|ZP_08385449.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332279959|ref|ZP_08392372.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|83287862|sp|P0AEC3|ARCB_ECOLI RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|83287863|sp|P0AEC4|ARCB_SHIFL RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|40951|emb|CAA37397.1| arcB [Escherichia coli]
 gi|24053684|gb|AAN44715.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 301]
 gi|30042806|gb|AAP18529.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 2457T]
 gi|48994928|gb|AAT48172.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|81246964|gb|ABB67672.1| aerobic respiration sensor-response protein [Shigella boydii Sb227]
 gi|85676004|dbj|BAE77254.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K12 substr. W3110]
 gi|110616623|gb|ABF05290.1| aerobic respiration sensor-response protein [Shigella flexneri 5
           str. 8401]
 gi|157081355|gb|ABV21063.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|169753468|gb|ACA76167.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890579|gb|ACB04286.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170521156|gb|ACB19334.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188487905|gb|EDU63008.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|190901330|gb|EDV61097.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|192927010|gb|EDV81633.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|192956371|gb|EDV86831.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194412862|gb|EDX29154.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194421910|gb|EDX37916.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209757938|gb|ACI77281.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757944|gb|ACI77284.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209913944|dbj|BAG79018.1| aerobic respiration sensor-response protein [Escherichia coli SE11]
 gi|218353647|emb|CAU99866.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli 55989]
 gi|218362548|emb|CAR00172.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI1]
 gi|218371965|emb|CAR19821.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI39]
 gi|218433927|emb|CAR14844.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli UMN026]
 gi|222034927|emb|CAP77670.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LF82]
 gi|226839999|gb|EEH72020.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|238861439|gb|ACR63437.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|242378753|emb|CAQ33543.1| ArcB sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323000|gb|ACT27602.1| multi-sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253979209|gb|ACT44879.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BL21(DE3)]
 gi|257755986|dbj|BAI27488.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|257766317|dbj|BAI37812.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|260447763|gb|ACX38185.1| multi-sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|281602592|gb|ADA75576.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           2002017]
 gi|290764457|gb|ADD58418.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322633|gb|EFE62062.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|291426825|gb|EFE99857.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|291431995|gb|EFF04978.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|291469352|gb|EFF11843.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298277700|gb|EFI19216.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|299879910|gb|EFI88121.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|300358326|gb|EFJ74196.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300403676|gb|EFJ87214.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300417903|gb|EFK01214.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300451670|gb|EFK15290.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|300456889|gb|EFK20382.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300462192|gb|EFK25685.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300529833|gb|EFK50895.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300846921|gb|EFK74681.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301076775|gb|EFK91581.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|306906996|gb|EFN37504.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|308122746|gb|EFO60008.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|309703636|emb|CBJ02976.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli ETEC
           H10407]
 gi|312947767|gb|ADR28594.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313648546|gb|EFS12988.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2a str. 2457T]
 gi|315062516|gb|ADT76843.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli W]
 gi|315137796|dbj|BAJ44955.1| aerobic respiration control sensor protein arcB [Escherichia coli
           DH1]
 gi|315257138|gb|EFU37106.1| PAS domain S-box [Escherichia coli MS 85-1]
 gi|315617017|gb|EFU97627.1| aerobic respiration control sensor protein arcB [Escherichia coli
           3431]
 gi|320186696|gb|EFW61420.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           CDC 796-83]
 gi|320202124|gb|EFW76699.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           EC4100B]
 gi|320640281|gb|EFX09853.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645578|gb|EFX14587.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650888|gb|EFX19345.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656269|gb|EFX24181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320666794|gb|EFX33773.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154425|gb|EFZ40626.1| aerobic respiration control sensor protein arcB [Escherichia coli
           EPECa14]
 gi|323162902|gb|EFZ48737.1| aerobic respiration control sensor protein arcB [Escherichia coli
           E128010]
 gi|323173530|gb|EFZ59159.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LT-68]
 gi|323178614|gb|EFZ64190.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1180]
 gi|323183164|gb|EFZ68562.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1357]
 gi|323376896|gb|ADX49164.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11]
 gi|323941690|gb|EGB37869.1| hsp90-like protein [Escherichia coli E482]
 gi|323946936|gb|EGB42952.1| hsp90-like protein [Escherichia coli H120]
 gi|323961135|gb|EGB56749.1| hsp90-like protein [Escherichia coli H489]
 gi|323966390|gb|EGB61824.1| hsp90-like protein [Escherichia coli M863]
 gi|323970227|gb|EGB65498.1| hsp90-like protein [Escherichia coli TA007]
 gi|324119575|gb|EGC13457.1| hsp90-like protein [Escherichia coli E1167]
 gi|331037379|gb|EGI09603.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331048196|gb|EGI20273.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331062950|gb|EGI34864.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331073354|gb|EGI44677.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331078472|gb|EGI49678.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332090932|gb|EGI96023.1| aerobic respiration control sensor protein arcB [Shigella boydii
           3594-74]
 gi|332102311|gb|EGJ05657.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|332345167|gb|AEE58501.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMNK88]
 gi|332752897|gb|EGJ83282.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-671]
 gi|332765209|gb|EGJ95436.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2930-71]
 gi|332999289|gb|EGK18875.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-272]
 gi|333014521|gb|EGK33868.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-304]
 gi|333014660|gb|EGK34006.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-227]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|26249796|ref|NP_755836.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           CFT073]
 gi|110643451|ref|YP_671181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|191174415|ref|ZP_03035918.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227887931|ref|ZP_04005736.1| histidine kinase [Escherichia coli 83972]
 gi|300979941|ref|ZP_07174793.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300990940|ref|ZP_07179392.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|301047943|ref|ZP_07194988.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|26110224|gb|AAN82410.1|AE016767_170 Aerobic respiration control sensor protein arcB [Escherichia coli
           CFT073]
 gi|110345043|gb|ABG71280.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|190905305|gb|EDV64941.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227835327|gb|EEJ45793.1| histidine kinase [Escherichia coli 83972]
 gi|300300175|gb|EFJ56560.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|300307876|gb|EFJ62396.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300407016|gb|EFJ90554.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|307555303|gb|ADN48078.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ABU 83972]
 gi|315294870|gb|EFU54209.1| PAS domain S-box [Escherichia coli MS 153-1]
 gi|323189169|gb|EFZ74453.1| aerobic respiration control sensor protein arcB [Escherichia coli
           RN587/1]
 gi|324012146|gb|EGB81365.1| PAS domain S-box [Escherichia coli MS 60-1]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|327251301|gb|EGE62990.1| aerobic respiration control sensor protein arcB [Escherichia coli
           STEC_7v]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|300955799|ref|ZP_07168141.1| PAS domain S-box [Escherichia coli MS 175-1]
 gi|300317345|gb|EFJ67129.1| PAS domain S-box [Escherichia coli MS 175-1]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 TLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|261253472|ref|ZP_05946045.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891]
 gi|260936863|gb|EEX92852.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891]
          Length = 1037

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 130/240 (54%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++   +AE AL    E   +A   K+ F+  +S+E+R+P+  IIG  DLL  + L +  
Sbjct: 489 DISQQKQAENALIAAKEEAEQAARSKSEFLAVMSHEIRTPMNGIIGMLDLLLENNLNTSQ 548

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S Q+ Y+ + SA S  LL L+NDILD + +DA  ++L      L  +L +  + +A  + 
Sbjct: 549 SHQA-YLAHTSALS--LLGLLNDILDFSKIDADKLELERQHFNLRHMLGDFAEQMAASLT 605

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF- 721
             N+ I + +   +    +AD  R+ QIFS ++SNA+ F+ +G  VI     +N +  + 
Sbjct: 606 NPNVEIILDMVQVEHSMILADSTRIRQIFSNLVSNALKFTEQGEVVITVRLEENDENTWQ 665

Query: 722 ---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              S+K++G  IP+D   S+F++F        RR  G GLGL+IV+       G V++SS
Sbjct: 666 LNASIKDSGIGIPQDRLNSLFDKFSQVDASTTRRYGGTGLGLAIVKRLCQAMKGSVTVSS 725


>gi|254163152|ref|YP_003046260.1| aerobic respiration control sensor protein ArcB [Escherichia coli B
           str. REL606]
 gi|253975053|gb|ACT40724.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli B str. REL606]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|170749613|ref|YP_001755873.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
 gi|170656135|gb|ACB25190.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
          Length = 1936

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 12/237 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ ++ 
Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I+A+ T LL+L+NDILDL+ +++G + L    + L DL+  + ++      E ++   
Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDLVENLNRTFRQLAEERHLAFV 1349

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721
            + +  G   +   D +RL Q+   +LSNA  F+ KGS V L+     G            
Sbjct: 1350 IDVEPGLPRAVRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLRIGSAEGSPLRAGSQWLAL 1408

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            SV + G  I ED  + +F  F        R+  G GLGL+I      L GG + + S
Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465


>gi|16329802|ref|NP_440530.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652287|dbj|BAA17210.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 974

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 114/503 (22%), Positives = 221/503 (43%), Gaps = 53/503 (10%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQ------FHNRSFVELWEIDLAFLATNPSNDE 354
           +++ +   +E L +L     ++ Q+ YLQ      + N   + + +++ A   T+   D 
Sbjct: 475 IHESVAQMWEPLKDLQNNFPLW-QDTYLQENEGGRYRNHESLAVGDVETAGF-TDCHLDN 532

Query: 355 LLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           L  F +R+   +P  +  + W   +   Y++       W       LH I  +N  G  +
Sbjct: 533 LRRFEIRAFLTVPVFVGEQLW--GLLGAYQNGAPRH--WQAREIHLLHQI--ANQLGVAV 586

Query: 414 WMFENLT-VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +  + L   Q   +T  NTL  +    +D+L++G+ V    GRI   NPA  +++  E  
Sbjct: 587 YQAQLLARFQEQSKTMENTLADLTA-IVDNLADGLLVIDLFGRITRYNPALLAMFDLEGL 645

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L        + A    Y+ E+    L   +     +E+K +   +EL      +  I  
Sbjct: 646 EL--------LGAGVDAYFPET----LNQLLAKPEREEQKLVTADVELSQGRQGQALITS 693

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + + +    +     +V   R +T +    R+ + +K  F+  VS+ELR+PLT+I+GF  
Sbjct: 694 ITSHENGCEYPQCLGAVIMIRDVTHE----REVERMKTDFLATVSHELRTPLTSILGFAT 749

Query: 593 L--------------LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +              L    LG    +  + +  I + +  L  L+ND+LD+A ++AG  
Sbjct: 750 VIQDKLNRVIIPELDLAQPHLGKATERVMRNLAIIESEAQRLTVLINDVLDIAKMEAGQE 809

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                   +  ++     +I  +  + NI ++   +  L  F+ D  R+LQ+   +LSNA
Sbjct: 810 SWQEQPCAIGPIIERAIATITPQAQKKNISLQGDLEPGLPDFIGDENRILQVVLNLLSNA 869

Query: 699 MDFSSKGSTVILKAARDNGDFIF-SVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGV 754
           + F+ KG  +I   +  + ++++  + ++G  I P D  K    F +   +    + +G 
Sbjct: 870 VKFTPKG--LITARSHFHQNYLWVEIIDHGPGIHPADQEKIFEPFQQGGGDVLTDKPQGT 927

Query: 755 GLGLSIVESFINLHGGHVSISSS 777
           GLGL I +  +  HGG + ++SS
Sbjct: 928 GLGLPICKKIVEHHGGTIGVNSS 950


>gi|331664824|ref|ZP_08365729.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
 gi|331058072|gb|EGI30054.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTTEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter
            succinogenes subsp. succinogenes S85]
          Length = 1260

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 125/232 (53%), Gaps = 14/232 (6%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
            + +D  K +F+ ++S+++R+P+  I+GFTDL     +  ++ K     Y+  +  SS  L
Sbjct: 881  QSSDRAKTTFLSNMSHDIRTPMNAIVGFTDL----AMAHIDEKDQVLDYLHKLGQSSNHL 936

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            L+L+ND+LD++ +++G M L+     L +++N +K  +   ++  N+   V  D      
Sbjct: 937  LSLINDVLDMSRIESGKMVLSEKNEDLVEIVNALKDIVQADVNAKNLVFDVEMDISESGI 996

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDM 734
            V D+ RL Q+   +LSNA+ ++  G ++ +  +       D+  + F +++NG  +  D 
Sbjct: 997  VCDKLRLNQVLLNVLSNAIKYTQAGGSIHMHISEKESMKPDSSMYEFRIRDNGMGMNPDF 1056

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             K+++  F   +++     +G GLG+SI ++ + + GG + I S +   T +
Sbjct: 1057 LKTIYEPFTRANSSTVSGIQGTGLGMSITKNIVEMMGGRIEIFSEENKGTEV 1108


>gi|149922270|ref|ZP_01910707.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149816903|gb|EDM76389.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 590

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 4/216 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + + +KN FV  VS+ELR+PLT+I G   LL+    G L+ +    V    +++  L+ L
Sbjct: 240 RIERLKNEFVSIVSHELRTPLTSIRGSLGLLEGGVAGELDIRIKGLVRIALSNTERLIRL 299

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VNDILDL  ++ G ++L    +    L  +    I+    E+ + + V           D
Sbjct: 300 VNDILDLDKIETGKLELRSEVLDPIRLTEDAIAEISGYATESGVSL-VREFESACDVRGD 358

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           R RLLQ+   +LSNA+ FS  G TV ++      G   FSV + G  I ED    +F +F
Sbjct: 359 RDRLLQVLINLLSNAIKFSKPGDTVTVEIEEISPGTVRFSVCDEGPGIAEDQMPKLFRKF 418

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                   R   G GLGL+I ++ I+ HGG + + S
Sbjct: 419 SQLDESATRSAGGSGLGLAISKAIIDAHGGGIGVES 454


>gi|329957581|ref|ZP_08298056.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328522458|gb|EGF49567.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 808

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 16/238 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E  L +  E    AD +K++F+ ++S+E+R+PL  I+GF+ LL   +     
Sbjct: 567 DITELKETESKLIDAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSSLLVQEE---NP 623

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  +  ++ +LL L++DILDL+ ++AG        + +N L  ++ + +  K  
Sbjct: 624 EEREQYMAIVEENNELLLQLISDILDLSKMEAGTFDFVERELDVNLLCEDMVRVMKLKAK 683

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                ++V+ D  L   V  +DR RL Q+ +  ++NA+ F++ GS  +     D G   F
Sbjct: 684 PG---VEVVFDRHLPECVIASDRNRLNQVIANFINNAIKFTAIGSIRLGYDRIDAGHLRF 740

Query: 722 SVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V + G  I ++    +F+RFV   S  H     G GLGLSI +S +   GG + + S
Sbjct: 741 YVADTGIGIMQEKQAEIFDRFVKLNSFVH-----GTGLGLSISKSIVEQLGGTIGVES 793


>gi|300173927|ref|YP_003773093.1| histidine protein kinase sensor protein [Leuconostoc gasicomitatum
           LMG 18811]
 gi|299888306|emb|CBL92274.1| Histidine protein kinase, sensor protein [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 361

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+  + ++S++LR+PLT IIG+  L++ +     ++++++Y+      S  +  LV D+ 
Sbjct: 136 KDEMITNISHDLRTPLTAIIGYLGLVEMNADTLSSAEKAKYIHTAYDRSNQMKVLVEDLF 195

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
             +   A    LN ST+ L DL  ++  S   +  E +I +  I++ ++    AD  +L 
Sbjct: 196 AFSQTQAHDAVLNISTLSLGDLFAQLIASYEIEAQEKHIELTQITNPEIIMLEADSDKLA 255

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           ++   +++NAM +  + + + L A     D    V N+G  IP      +F RF  V ++
Sbjct: 256 RVLMNLITNAMKYGKRETFIKLTAQVKKTDVEIRVINDGVKIPNKDIVDIFGRFYRVESS 315

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +  G GLGL+IV+  I  H G VS SS DE +T+    IP K+
Sbjct: 316 RNSKTGGTGLGLAIVKGIIEQHQGSVSASSDDE-LTSFIVTIPLKQ 360


>gi|295134774|ref|YP_003585450.1| histidine kinase [Zunongwangia profunda SM-A87]
 gi|294982789|gb|ADF53254.1| histidine kinase [Zunongwangia profunda SM-A87]
          Length = 743

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQSQ 608
           + E+   +++E LR    +K+ F  +VS+EL++PL+ II     +LKT      NS    
Sbjct: 243 QKEKLKAKQSEELRT---LKDQFFTNVSHELKTPLSLIITPLASILKTE-----NSSNRS 294

Query: 609 YVEYISASSTILLNLVNDILDLATVDA-GIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +  I  S+  LL LVN +LD+  ++  G + +N     LN LLN V Q          I
Sbjct: 295 KLTKIHQSAIELLQLVNQLLDVRKIETTGKLSVNSDCCQLNQLLNNVTQPFDELAQHKGI 354

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           R K  IS  +   F+ D ++  +I S +LSNA  F+ +   V      D       V +N
Sbjct: 355 RFKREISKEETLIFI-DNEKFKKIVSNLLSNAFKFTPQEGKVSFIGELDGEILKIQVTDN 413

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +F R+  +   G+  G G+GL +V+S++ L GG V+++S+    +T   
Sbjct: 414 GKGIAKEEVPKIFERYYRSNPEGENTGTGIGLHLVKSYLELLGGTVNVTSAPAKGSTFTV 473

Query: 787 RIP 789
           RIP
Sbjct: 474 RIP 476


>gi|74313747|ref|YP_312166.1| aerobic respiration control sensor protein ArcB [Shigella sonnei
           Ss046]
 gi|73857224|gb|AAZ89931.1| histidine protein kinase/phosphatase [Shigella sonnei Ss046]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|332998333|gb|EGK17932.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           VA-6]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|324018338|gb|EGB87557.1| PAS domain S-box [Escherichia coli MS 117-3]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|300918972|ref|ZP_07135527.1| PAS domain S-box [Escherichia coli MS 115-1]
 gi|300413914|gb|EFJ97224.1| PAS domain S-box [Escherichia coli MS 115-1]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|269215795|ref|ZP_06159649.1| putative sensor histidine kinase [Slackia exigua ATCC 700122]
 gi|269130745|gb|EEZ61821.1| putative sensor histidine kinase [Slackia exigua ATCC 700122]
          Length = 650

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN F   VS+ELR+PLT+++ +   LK S+   +  +    V  I  S+ +LLNLVN+IL
Sbjct: 412 KNEFFAIVSHELRTPLTSVMAYARRLKNSE--GICERDLDSVIQIETSANVLLNLVNNIL 469

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            L+  +AG   L    I   +LL  V++++       NI +   +D  +   +AD +++ 
Sbjct: 470 TLSKAEAGKNTLELGPIDFVELLKFVEKTLRPLAANKNIELVSHADANVPIAMADWEKMR 529

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI-PEDMCKSVFNRFVSN 745
           ++   +  NA+ ++ +G +V + A  D    + +  V +NG  I P+D   S+F  +   
Sbjct: 530 RVIDNLADNAIKYTHEGGSVDVHAWLDENENEIVIDVVDNGIGIDPKDQ-DSIFEAY-EQ 587

Query: 746 AHR----GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           A R       RG GLGL++V+  + LH G VS+ S+ +  +T   RIP+
Sbjct: 588 ARRMPVSHHIRGTGLGLAVVKELVRLHEGSVSVQSTPKQGSTFTVRIPT 636


>gi|256024215|ref|ZP_05438080.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           4_1_40B]
          Length = 778

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|154251517|ref|YP_001412341.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155467|gb|ABS62684.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 509

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 6/229 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+ELR+PL  IIGF++++ +   G        +Y   I+ S   LL L+ND+
Sbjct: 271 KSHFLANMSHELRTPLNAIIGFSEVMASEIFGKHGVPTYKEYANDINRSGQHLLGLINDV 330

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQR 686
           LDL+ ++AG  ++    + +  L  + ++ +  +     + I +  +DG L     D + 
Sbjct: 331 LDLSRIEAGRFQITEEEVDIAHLAEDCRRILEIRAQAQRVSITEDFADG-LPIVYGDARA 389

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           L Q +  +L+NA+ FS   S V + A  + +G+  F V +NG  I E     V + F   
Sbjct: 390 LRQTWINLLTNAIKFSPPDSEVKMFARMEASGEMRFGVHDNGPGIAESEIDKVLHAFTQG 449

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           A    +  +G GLGLSIV+  + +HGG   + S     T   C +P + 
Sbjct: 450 ASGLAQPGKGSGLGLSIVKGLLAVHGGRFELKSQLGAGTQAECTLPPQR 498


>gi|2353767|gb|AAB94870.1| DMSO/TMAO-sensor kinase [Rhodobacter sphaeroides]
          Length = 815

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 134/245 (54%), Gaps = 18/245 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++TF +VT++ RA     E+ EAL +A   K  F+  +S+E+R+P+ +I G T+LLK S+
Sbjct: 292 VVTFHDVTEARRAR----EQAEALARA---KTDFLATMSHEIRTPIHSIGGVTELLKQSE 344

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L    S+   YV+ I  S+ +L ++V+D+LD A +++G+++L      ++ +L++V + +
Sbjct: 345 LA---SRDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401

Query: 659 ATKMHEN-NIRIKVISDGKLGSFVADRQ-RLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
              +     +RI VI    L +     Q  L QI   + SNA+ F+ +G TV++ A R  
Sbjct: 402 QPLVRRKPQLRI-VIERTDLPAGPGKMQASLRQILINLTSNAVKFTPEG-TVVIGAERLA 459

Query: 717 GD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           G   F F+V + G  I  +  + +F  ++ +     RR  G GLGL+I        GG +
Sbjct: 460 GGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRL 519

Query: 773 SISSS 777
            + S+
Sbjct: 520 DVRST 524


>gi|28209959|ref|NP_780903.1| sensory transduction histidine kinase [Clostridium tetani E88]
 gi|28202394|gb|AAO34840.1| sensory transduction histidine kinase [Clostridium tetani E88]
          Length = 468

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 4/243 (1%)

Query: 541 TFVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            FVN  D +     +     E+L K +E + SF+ +VS+E+RSP+T+I GF   +    +
Sbjct: 219 VFVNSEDEIGDLANSFNAMAESLEKIEENRRSFISNVSHEIRSPITSIKGFISGILDGVI 278

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            S   KQ+ Y+      +  L  LVND+LDL+ ++AG +KL    + +N+++        
Sbjct: 279 PS--EKQNYYLALAYDETQRLTRLVNDLLDLSAIEAGQLKLRIEEVNINEIIRLTVIKFK 336

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             +   N+ + +         V D+ RL Q+   ++ NA+ ++ +   V ++        
Sbjct: 337 PLIDRKNLDVDICLQEDDLYVVGDKDRLFQVMINLIDNAIKYTVENGKVEVRTKLKGNKV 396

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             S+ N+G  IPE+  K+V++RF   +  R  +   GLGLSIV S +   G  + + + D
Sbjct: 397 YVSIYNSGKHIPEEDIKNVWSRFYKVDKSRTSKVSTGLGLSIVRSILTQLGEDIWVKNVD 456

Query: 779 EGV 781
            GV
Sbjct: 457 AGV 459


>gi|298249868|ref|ZP_06973672.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547872|gb|EFH81739.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 852

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 5/238 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+   N A ++ ++ K+ F+   S+EL++PLT +   T L +         + +  +  +
Sbjct: 613 AIVLDNSARKELEQRKDDFISMASHELKTPLTALKMQTQLARKRLERQSPHEAATVLSKV 672

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I ++ + 
Sbjct: 673 ERPVKQLERLIGELLDVSKIQAGRLEYQQETVDLDTLLHEVADTMQHAHPSHRILVRGVV 732

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                S +ADR RL Q+F+ +LSNA+ +S    TV +  +         V ++G  IP +
Sbjct: 733 QA---SLLADRDRLGQVFTNLLSNAIKYSPGAETVEMDLSASEDAVTIRVHDHGLGIPRE 789

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F+RF   A   Q+   G+G+GL IV   I  HGG +++ S     +T    +P
Sbjct: 790 QRDKIFDRFYRVAGPKQKAIPGLGMGLYIVAEIIKGHGGTITVDSKVGKGSTFTVTLP 847


>gi|322417554|ref|YP_004196777.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320123941|gb|ADW11501.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 510

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 122/255 (47%), Gaps = 25/255 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ ++ K  FV  +S++L+SP+T ++G  DL++ +KLG +   Q +Y+     S   ++
Sbjct: 250 LKELEQEKEDFVSMLSHDLKSPITAVVGSIDLVREAKLGPVTGDQREYLNAAIESCEEMV 309

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +++ +L +   +AG MKL +       L+N       T      IR+      +L +  
Sbjct: 310 EMIDTLLGIHKFEAGKMKLYFKDEDPAALVNRSVTKFQTMARRGGIRLFTTLPSELPAIS 369

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------------ARDN---------GDF 719
           ADR    +I   +LSNA+ F+ +G  + + A               +N         G+F
Sbjct: 370 ADRSSFNRIMGNLLSNAVKFTPEGGEIEVSADLVQEPSAVTGAVPEENYAPQQLPREGEF 429

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +   V+++G  IP++   S+F+RFV   N  +G+ RG GLGL+     ++ H G +   S
Sbjct: 430 VRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGLGLAFCRKAVDAHNGFIWAES 489

Query: 777 SDEGVTTINCRIPSK 791
                +     +P++
Sbjct: 490 EPGAGSVFTLLLPAQ 504


>gi|154500841|ref|ZP_02038879.1| hypothetical protein BACCAP_04526 [Bacteroides capillosus ATCC
           29799]
 gi|150270341|gb|EDM97667.1| hypothetical protein BACCAP_04526 [Bacteroides capillosus ATCC
           29799]
          Length = 881

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 127/223 (56%), Gaps = 8/223 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615
           E    L K ++++ + ++ +S++LR+PLT+I G  ++LL    L    +K+  Y + I  
Sbjct: 641 EAAAVLAKNEQLRANLLRSISHDLRTPLTSISGNASNLLSNGALFDTKTKEQMYTD-IYD 699

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L+NLV ++L ++ ++ G M L+ ST ++++++ E  + I  K  E  + ++   D 
Sbjct: 700 DAMWLINLVENLLSVSRLEEGKMNLHMSTELVDEVVAEALRHINRKSVEYRLNVQNSEDY 759

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDM 734
            L     D + ++Q+   I+ NA+ ++  GS + +   R  G FI+ S+ +NG  IP+  
Sbjct: 760 VLAQI--DAKLIIQVLINIVDNAIKYTPPGSQIDIGWKR-QGRFIYISIGDNGPGIPDQA 816

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
              +F+ F S ++R    RR +GLGL++ +S +N HGG ++++
Sbjct: 817 KPHIFDMFYSASNRIADSRRSMGLGLALCKSIVNAHGGEITVA 859


>gi|330950735|gb|EGH50995.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 387

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 129/258 (50%), Gaps = 14/258 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+  + E+ L E      +A+E K+ F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 84  WIDITERKQLEQQLQEAMHLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEQAL-R 142

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L    SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L + V +  + +
Sbjct: 143 LGRIPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLEGLFDGVIELFSAQ 202

Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718
             E  + +++   G+  G +  D  RL Q+   +L NA+ F+ +G+ V+ L    D+ + 
Sbjct: 203 AREKGVELRLEFSGQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVTLDVTSDSPES 262

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                 ++++G  I     + VF  F      + AH G   G GLGLSI    + L  G 
Sbjct: 263 TRLRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYG---GSGLGLSITRQLVELMKGD 319

Query: 772 VSISSSDEGVTTINCRIP 789
           +S+ S     T +   +P
Sbjct: 320 ISLQSEPGKGTLVTIDLP 337


>gi|299065362|emb|CBJ36531.1| Sensor protein [Ralstonia solanacearum CMR15]
          Length = 995

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 18/253 (7%)

Query: 549 VRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V AERA    L    +A   A   K+ F+  +S+E+R+P+  ++G  +LL  ++L     
Sbjct: 353 VTAERAQADALVSARQAAESALRAKDRFLATMSHEIRTPMNGVLGLVELLLQTRL---ER 409

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q + V     SS  LL++++DILD A ++AG + +  +   L  LL+     +A++ HE
Sbjct: 410 EQQRMVTLAQESSRALLHVLDDILDYAKIEAGRLSIAPAPTDLRALLDSTVGLLASRAHE 469

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719
            ++ ++V  D  + + V+ D  RL Q+ S +LSNA+ F+  G    S   ++AA D    
Sbjct: 470 RSLAVRVDVDAAVPATVSVDGIRLRQVLSNLLSNAIKFTEHGSVRLSAACMEAAADTAHL 529

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           I  V + G  I  +   ++F  FV       HR    G GLGL+I      L GG + + 
Sbjct: 530 IIQVADTGIGIAPEAQATLFTPFVQADSTVTHR--HGGTGLGLAISRQLAQLMGGSLDMD 587

Query: 776 SSDEGVTTINCRI 788
           S+    TT+  R+
Sbjct: 588 STPNVGTTLTLRL 600


>gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1829

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 124/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ 
Sbjct: 1343 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADSNLTPKQVEFA 1402

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1403 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1462

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA--------------- 713
            V +S     +   D QRLLQ+   +LSNA+ F+  G+  ++++ A               
Sbjct: 1463 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPVAIREQLLEA 1522

Query: 714  -----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  D G   FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1523 GSLRDADAGLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1582

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1583 LLGGEIHAASEPGRGSTFTLYLP 1605


>gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703]
 gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 918

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     L   Q  Y++ I  S+  LL
Sbjct: 282 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LTPTQQDYLQTIERSANNLL 337

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L++ L+EV   +A   HE  + + + I       F
Sbjct: 338 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVVMLLAHTAHEKGLELTLNIQHDVPEQF 397

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+  I    R            +K+ G  I E    
Sbjct: 398 IGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQEQHQVLLEIQIKDTGIGIAEIQQA 457

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +F  F        RR  G GLGL I +  +   GG +S  S     TT  C
Sbjct: 458 QLFQAFRQADTSISRRHGGTGLGLVITQKLVREMGGDISFHSKLNQGTTFWC 509


>gi|229196124|ref|ZP_04322875.1| hypothetical protein bcere0001_16850 [Bacillus cereus m1293]
 gi|228587358|gb|EEK45425.1| hypothetical protein bcere0001_16850 [Bacillus cereus m1293]
          Length = 273

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 136/246 (55%), Gaps = 13/246 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL +   +
Sbjct: 26  TNVNRMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 84

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L N V+++L+   ++   ++L+ S + +  L+ ++      ++ + 
Sbjct: 85  CEQYVSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 144

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           ++   +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN
Sbjct: 145 DMSFCMKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKN 203

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778
            G  IP++    VF +F    +RG++       G G+GL+I +S   LH G +++ S+D 
Sbjct: 204 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIAKSIAELHKGDIAVRSNDK 259

Query: 779 EGVTTI 784
           E V TI
Sbjct: 260 ETVFTI 265


>gi|295660700|ref|XP_002790906.1| two-component sensor protein histidine protein kinase
            [Paracoccidioides brasiliensis Pb01]
 gi|226281158|gb|EEH36724.1| two-component sensor protein histidine protein kinase
            [Paracoccidioides brasiliensis Pb01]
          Length = 2331

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 130/259 (50%), Gaps = 32/259 (12%)

Query: 552  ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL    EA RK                 A + K+ F+ +VS++LR+P+  +IG T+LL
Sbjct: 1788 KRALAHAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELL 1847

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   +L+ +Q+ YVE I   +  LL L+NDILD + ++AG MK+    + L D + E 
Sbjct: 1848 KKT---NLDREQNGYVESIRVCADTLLTLINDILDFSKLEAGKMKVAAIPLNLRDTIMEA 1904

Query: 655  KQSIA-TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             +++  T  H     I+ + +      V  D  RL QIF  +LSN+  F+ +GS  +   
Sbjct: 1905 VRALCFTHRHRGLQTIEDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGSVTVKAN 1964

Query: 713  ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
            A D  D        V + G  IP +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 1965 ASDEEDGRIRITCKVVDTGIGIPGEQLVRLFRPF-SQADSSSARSFGGSGLGLSICKAII 2023

Query: 766  -NLHGGHVSISSSDEGVTT 783
             ++ GG + +  S+EGV T
Sbjct: 2024 EDVLGGKIWL-QSEEGVGT 2041


>gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
 gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
          Length = 580

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           ++ ++++  FV +VS+EL++P+T+I GF++ L     G+++ K++  +++  I   S  L
Sbjct: 351 KQLEQMRKDFVANVSHELKTPITSIKGFSETLLD---GAIDDKEALTEFLSIILKESVRL 407

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+LDL+ ++    KLN       ++L E++  +  K  E  I++ V    +    
Sbjct: 408 ETLIQDLLDLSKIEQQQFKLNIQEANATEILQEIQVLLNQKATEKGIQLHVRVPKEPVYV 467

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +AD  RL QIF  +++NA+ ++ +G +V + A    G + F V + G  + +     +F 
Sbjct: 468 MADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDVADTGIGMKKSEIPRIFE 527

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF  +         G GLGL+IV+  +  H G +S+ S     TT    + S
Sbjct: 528 RFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSLKS 579


>gi|83950797|ref|ZP_00959530.1| hypothetical protein ISM_06845 [Roseovarius nubinhibens ISM]
 gi|83838696|gb|EAP77992.1| hypothetical protein ISM_06845 [Roseovarius nubinhibens ISM]
          Length = 499

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 25/276 (9%)

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
           + +W  D  G ILW N +     E    +     GE R    +++  R            
Sbjct: 164 YPLWRLDLTGRILWRNAACDSRFEALSDMPLPGPGERRN---DQVSLR------------ 208

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN----DQLTHTYEILHNLTVAI 319
              + L  G +  ++I  +    G A  AI+ ++  T      D +    +   +LTV +
Sbjct: 209 ---NPLNMGED-CFEIHTIAQPDGFARYAIETTRVRTAEAARVDFIQTLTKTFAHLTVGL 264

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           A+FDQ R L   N +  +L  +   F+AT PS +   + LR  + +PE  ++  W+  I 
Sbjct: 265 AVFDQRRQLVLFNPALTDLTRLPPEFMATRPSLNAFFDRLRDGHVMPEPRDYTDWRRQID 324

Query: 380 SVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
            +  S+E   +++TW LP+  T  V    +P G   + FE+++  V    ++ + +  + 
Sbjct: 325 DMLSSAEDGLYQETWSLPSNVTYKVTGRPHPDGAVAFFFEDISADVQQSRRHQSEMSTRD 384

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             I+ L + V +  PD RI L N AFR L     +R
Sbjct: 385 AMIEALDQAVMIVCPDDRISLCNSAFRQLVGIAPDR 420


>gi|126460803|ref|YP_001041917.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102467|gb|ABN75145.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
          Length = 849

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 41/421 (9%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           W++ +   +       +      GQ L ++      G  + +  ++T Q+ L        
Sbjct: 153 WQQRMIRRWDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQMRLRA------ 206

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYY 491
                 ID + +G  +F    R+ L N  +R+++      L PG     I         +
Sbjct: 207 -----AIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQF 261

Query: 492 NESDG----WDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTF 542
            E+ G    W   A  + +F    + L G  E   D      V+E+     P+   +   
Sbjct: 262 PEALGREEEW--LADRLAAF----RHLGGAAEQQLDDGRWLRVIEHET---PDGGRVGLG 312

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+  R + AL     A   A   K++F+ ++S+E+R+P+  I+G  DLL  +    L
Sbjct: 313 VDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET---VL 369

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q  + E I +S   LL ++NDILD + ++A  + L+     L   ++EV   +  K 
Sbjct: 370 TEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKA 429

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
               I + +  D  L + FV D  RL Q+ + ++ NA+ F++ G  +I    L+ A    
Sbjct: 430 RAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRH 489

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           D   +V++ G  I  +    VF  F        RR  G GLGL+I    I L  G V + 
Sbjct: 490 DLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVE 549

Query: 776 S 776
           S
Sbjct: 550 S 550


>gi|317154358|ref|YP_004122406.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944609|gb|ADU63660.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 599

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 12/243 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+   AE AL    E    A+  K  F+ ++S+E+R+PL  I+G   LL+      L
Sbjct: 198 IDLTEQRAAEEALESAKEVAESANIAKTQFLANMSHEIRTPLNGILGMLRLLRDH---DL 254

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q++YV     S   LL ++ND+L L+ ++A  + +    + L  L + V +    ++
Sbjct: 255 PPEQAEYVTTAETSGRNLLAILNDVLSLSQIEANAVHVCQEGLNLPLLADAVLRVFKAQI 314

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----G 717
             + + +    D  +     AD+ +L QI   ++ NA+ F+  GS  I   A D+    G
Sbjct: 315 DNSGVELGFTIDPTIPHDLCADQGKLRQILFNLVGNALKFTRNGSVRIDITAADDRRHPG 374

Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           D   IF+V++ G  I +D   SVF  F        R+  G GLGL IV   ++L GG V 
Sbjct: 375 DIILIFAVEDTGIGIAQDQLVSVFAPFTQADGSYARKYGGAGLGLPIVSRLVSLLGGSVC 434

Query: 774 ISS 776
           I S
Sbjct: 435 IDS 437


>gi|298481842|ref|ZP_07000032.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272064|gb|EFI13635.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 785

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 142/270 (52%), Gaps = 17/270 (6%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +L  +  ++T+    E+ L +      ++D +K++F+ ++S+E+R+PL  
Sbjct: 383 ALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ LL  ++      ++  Y   I+ +S ILL L+NDILDL+ ++AG   L Y    
Sbjct: 443 IVGFSQLLPAAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497

Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           +N  L EV ++I   +H+  ++  + ++ D +  +     D+ R++Q+ +  L+NA  F+
Sbjct: 498 MN--LGEVCRTIYA-VHKERVKEGVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFT 554

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             G  + L   R + +    VK+ G  I  +    +F RFV      Q  G GLGLSI +
Sbjct: 555 YAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICQ 611

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             I   GG + ++S     +T    IP +E
Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|303326366|ref|ZP_07356809.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302864282|gb|EFL87213.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 885

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 134/261 (51%), Gaps = 10/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + ++   + TD++  ++ L++  EA R A+  K++F+ H+S+E+R+P+  IIG T  +  
Sbjct: 342 RQIMVLTDQTDTLMYQQTLSDALEAARGANAAKSNFLSHMSHEIRTPMNAIIGMTT-IAL 400

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S+L     +    +  I+ SS  LL L+ND+LD++ ++ G + + +    L   L  +  
Sbjct: 401 SRLDD-RGRLEDCLGKIAQSSRHLLGLINDVLDMSKIERGRLSIAHEPFNLRLSLQGIVN 459

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
            I  ++ E     +V +S+        D  RL QI   ILSNA+ F+ KG ++ L   + 
Sbjct: 460 LIQPQIQEQGQNFEVSLSEVDEEELNGDGMRLNQILINILSNAVKFTPKGGSIRLDIRQL 519

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
               +N  F F +++ G  + E+    ++  F   + A   Q  G GLG++I ++ ++L 
Sbjct: 520 HKNHNNVRFRFIIRDTGIGMSEEFISRLYMPFEQATAATASQFGGTGLGMAITKNLVSLL 579

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +S+ S +   T     +P
Sbjct: 580 GGMISVKSKEGKGTEFTVELP 600


>gi|171059183|ref|YP_001791532.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776628|gb|ACB34767.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 957

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +    A+  K++F+ ++S+E+R+P+  IIG T LL+ +      ++Q   +  ++
Sbjct: 274 LAQARDHAEAANRAKSTFLANMSHEIRTPMNAIIGLTQLLRRTHRDPAGAEQ---LAKVA 330

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL ++ND+LDL+ +++G ++L    I L++LL+     ++++ HE  + + + +D
Sbjct: 331 DAADHLLQIINDVLDLSKIESGKVELESIDIDLDELLSRTLSLVSSRAHEKGLELVLDTD 390

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI---FSVKNNGSS 729
               +   D  RL Q    +L+NA+ F+  GS VIL+  +  D  D +   FSV++ G  
Sbjct: 391 HLPRTLRGDPTRLSQALLNLLTNAIKFTDHGS-VILRGQKLQDGADGVHVRFSVQDTGIG 449

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +  D  +++F  F        RR  G GLGL+I      L GG     S
Sbjct: 450 VEADQVEALFLAFEQGDSSTTRRHGGTGLGLAITRHLAQLMGGESGADS 498


>gi|189425738|ref|YP_001952915.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421997|gb|ACD96395.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 827

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 11/233 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT    A   A++ K+ F+ ++S+E+R+P+  +IG   LL+ ++L     +Q  Y+  I 
Sbjct: 432 LTTARNAADAANQNKSEFLANMSHEIRNPMNGVIGMLQLLRFTEL---TDEQKDYLSAIE 488

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++NDILDL+ ++AG ++L  S   L   +N+V     ++  E  ++++   D
Sbjct: 489 TSADDLLAIINDILDLSKIEAGKIELEISRFSLRRCINDVLLMQTSRAFEKGVQVEARLD 548

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729
            +L   V  D+ R+ Q+   +L NA+ F+ +G+  I    L+   DN     +V + G  
Sbjct: 549 EQLPLEVYGDQLRVKQVLLNLLGNAVKFTEEGTISIEARLLQKQDDNSIVQITVSDTGIG 608

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           +  ++   VF+ F+       RR  G GLGL+I      L GG +S ++S+EG
Sbjct: 609 MSPEVLGKVFDPFIQADVCTTRRFGGTGLGLTICRQLAELMGGRIS-ATSEEG 660


>gi|310796709|gb|EFQ32170.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 2508

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 129/250 (51%), Gaps = 22/250 (8%)

Query: 550  RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +A+ A  E    ++ A+E    K+ F+ +VS+ELR+PL  +IG ++LLK S+   L+  Q
Sbjct: 1931 KAKHAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLKDSE---LDKDQ 1987

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHE 664
             +  + I  S+ +LL ++NDILD + ++A  MKL        +++ EV +++  + +   
Sbjct: 1988 QEMADNIKVSAELLLTVINDILDFSRMEADKMKLYVIAFNPEEMVREVVRAVSYSNRQKT 2047

Query: 665  NNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DN 716
                +K+I D  L S +   D  RL Q+   ++SN++ F+  GS  I   AR      D 
Sbjct: 2048 KQKNVKIIQDINLPSMLIFGDPIRLHQVLGNLISNSLKFTEDGSITI--GARVESETNDK 2105

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVS 773
               +F V++ G  IP+     +F  F        R+  G GLGLSI +S I  +  G + 
Sbjct: 2106 ATLLFRVQDTGIGIPQQQLVKLFQPFSQADTSTARKYGGSGLGLSICKSLIETMMKGKIQ 2165

Query: 774  ISSSDEGVTT 783
            + S  EGV T
Sbjct: 2166 LDSQ-EGVGT 2174


>gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1964

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A R+L EK E L      K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 1234 QARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNVENNLTPKQVEY 1293

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I +S + LL L+NDILDLA +++G M +    + L ++ +++ ++     H+  +  
Sbjct: 1294 AATIHSSGSDLLGLINDILDLAKIESGTMSVEIEQMQLAEVRHQLDRAFRQIAHDKGLDF 1353

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717
            ++  D +L   +  D +RL Q+   +LSNA  F++KG   +       G           
Sbjct: 1354 EINFDPRLPKAIYTDSKRLQQVLKNLLSNAFKFTAKGQVSLEVEPAYQGWSQDHEILNQA 1413

Query: 718  DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            + +  FSV + G  I  +  + +F  F        R+  G GLGLSI      L GG ++
Sbjct: 1414 ELVISFSVSDTGIGIAPEKQRLIFEAFQQADGTTSRQYGGTGLGLSISREIARLLGGEIT 1473

Query: 774  ISS 776
            + S
Sbjct: 1474 VIS 1476


>gi|217959392|ref|YP_002337940.1| sensor protein VanS [Bacillus cereus AH187]
 gi|217064047|gb|ACJ78297.1| sensor protein VanS [Bacillus cereus AH187]
          Length = 291

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 135/245 (55%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 45  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 103

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+++L+   ++   ++L+ S + +  L+ ++      ++ + N+  
Sbjct: 104 VSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSF 163

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 164 CMKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQC 222

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S  +LH G +++ S+D+  T  
Sbjct: 223 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIADLHQGDITVRSNDKE-TVF 278

Query: 785 NCRIP 789
             ++P
Sbjct: 279 TVKLP 283


>gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
 gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
          Length = 1311

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 10/224 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  +IG + L   S+L         Y+E I+ SS ILL +++DILD +
Sbjct: 571 FLANMSHEIRTPMNGVIGLSGLALKSEL---PEHARDYLEKINRSSLILLRIIDDILDFS 627

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
            ++AG M +  +   L+D+L +V   IA +  +  + +   S+  L  + V D  RL QI
Sbjct: 628 KIEAGQMSIEATEFDLDDVLQDVATLIADRQEQKPVEVVFSSEPDLPRTLVGDPHRLGQI 687

Query: 691 FSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              ++ NA+ F+  G  V+  +A     D      SV + G  + ++    +F  F    
Sbjct: 688 LLNLIGNALKFTEAGEIVVRISATERLEDQLRLQVSVADTGIGMTDEQMARLFKAFSQAD 747

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               RR  G GLGL+I +  + L GG +S+ S+    +T +  I
Sbjct: 748 GSTTRRFGGTGLGLAICKQLVELMGGTISVESTPGAGSTFSFTI 791


>gi|119486508|ref|ZP_01620566.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119456410|gb|EAW37541.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1837

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 143/300 (47%), Gaps = 27/300 (9%)

Query: 512  KSLQGTLELLSDS----VLEYSIIPLPNA-----QTMLTFVNVTDSVRAE---------- 552
            + ++G LE + DS     +    +PL N        +  F++VT+  +AE          
Sbjct: 1393 EEVEGELEFVFDSGEVRYIYGKAVPLRNELGKVRGVIGAFLDVTERKQAEAEREQLLARE 1452

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R+  E+ EA   A+ IK+ F+  +S+ELRSPL  I+G+ +LL+  K+      Q+  +  
Sbjct: 1453 RSAREEAEA---ANRIKDEFLAVLSHELRSPLNPILGWANLLQRQKVDDQVFHQA--LTT 1507

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I  +  + + L++D+LD++ +  G +KLN S++ L  ++    +++       +I I+  
Sbjct: 1508 IERNVKLQVQLIDDLLDVSRILRGKLKLNRSSVDLVVVILSAIETVRLAAEAKSIEIRTH 1567

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             D ++G  + D  RL QI   +LSN + FS  G  V +       +    V++ G  I  
Sbjct: 1568 LDTQVGKVLGDAGRLQQIVWNLLSNGVKFSETGGQVDIYLESVGNEAQIRVQDRGKGINP 1627

Query: 733  DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                 VF+ F        R+  G+GLGL+IV     +HGG V   S   G   T   ++P
Sbjct: 1628 KFLPYVFDYFRQEDGTTTRKFGGLGLGLAIVHYITEMHGGTVQAESPGVGKGATFTVKLP 1687


>gi|147677932|ref|YP_001212147.1| hypothetical protein PTH_1597 [Pelotomaculum thermopropionicum SI]
 gi|146274029|dbj|BAF59778.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 621

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 21/252 (8%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD---------- 592
           + +T+  + E AL + NE L + DE+K  F+  VS+ELR+PLT+++GF            
Sbjct: 115 MEITERKKVEEALRQSNEKLTELDELKTDFLSTVSHELRTPLTSVLGFAKITQKRLEEHI 174

Query: 593 ---LLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
              ++ T +      KQ +  +E I +    L  L+ND+LD+A ++AG ++     + + 
Sbjct: 175 FPLIISTDRRIEKTVKQVKDNLEIIVSEGERLTELINDVLDIAKLEAGKIEWKMEKLSMA 234

Query: 649 DLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           D++     + +    +  +   K I +G L     DR RL+Q+   ++SNA+ F+++GS 
Sbjct: 235 DVIERATAASSYLFEQKGLAFFKEIEEG-LPDLTGDRDRLIQVIINLISNAVKFTNEGSV 293

Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
                AR  GD I  SV + G  I  +  + +F +F         + +G GLGL+I +  
Sbjct: 294 TC--RARMIGDEITVSVIDTGIGIAREDHERIFEKFKQAGETLTDKPKGTGLGLAICKQI 351

Query: 765 INLHGGHVSISS 776
           +  HGG + + S
Sbjct: 352 VEHHGGRIWVES 363


>gi|90412925|ref|ZP_01220924.1| PAS domain [Photobacterium profundum 3TCK]
 gi|90326104|gb|EAS42538.1| PAS domain [Photobacterium profundum 3TCK]
          Length = 625

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 10/231 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  +  AL KA  IK  F+ ++S+E+R+P+  ++GF   L++  LG    +Q   V Y
Sbjct: 236 KKLEARTLALNKALTIKGDFMANMSHEIRTPMNGVLGFIQCLESQPLGEEAKRQ---VGY 292

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++N+ILD + +++G + LNY+ I + +L+     SI  +    +I ++  
Sbjct: 293 IKESAQSLLSIINEILDYSKLESGNVTLNYTPIAITELIKFSLMSIIYEAERKSIVLENN 352

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNNG 727
            D KL S ++ D  R+ QI + +L N++ F+  G    +V L     NG  I F VK+ G
Sbjct: 353 IDQKLASYYLGDECRIKQILTNLLGNSVKFTEHGKVTLSVTLINKTKNGTCIRFKVKDTG 412

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I  D    +F+ +        R+  G GLGLSI  S   L G  + + S
Sbjct: 413 IGIDLDKQIIIFDSYTQADGSISRKYGGTGLGLSISNSLCKLMGSKLEVKS 463


>gi|15642366|ref|NP_231999.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121588205|ref|ZP_01677949.1| sensor histidine kinase FexB [Vibrio cholerae 2740-80]
 gi|153819138|ref|ZP_01971805.1| sensor histidine kinase FexB [Vibrio cholerae NCTC 8457]
 gi|153822770|ref|ZP_01975437.1| sensor histidine kinase FexB [Vibrio cholerae B33]
 gi|227082493|ref|YP_002811044.1| sensor histidine kinase FexB [Vibrio cholerae M66-2]
 gi|229507565|ref|ZP_04397070.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae BX
           330286]
 gi|229512239|ref|ZP_04401718.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           B33]
 gi|229519375|ref|ZP_04408818.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC9]
 gi|229607071|ref|YP_002877719.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           MJ-1236]
 gi|254849491|ref|ZP_05238841.1| sensor histidine kinase FexB [Vibrio cholerae MO10]
 gi|255746952|ref|ZP_05420897.1| aerobic respiration control sensor protein ArcB [Vibrio cholera
           CIRS 101]
 gi|262161504|ref|ZP_06030614.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           INDRE 91/1]
 gi|9656939|gb|AAF95512.1| sensor histidine kinase FexB [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547547|gb|EAX57650.1| sensor histidine kinase FexB [Vibrio cholerae 2740-80]
 gi|126510328|gb|EAZ72922.1| sensor histidine kinase FexB [Vibrio cholerae NCTC 8457]
 gi|126519715|gb|EAZ76938.1| sensor histidine kinase FexB [Vibrio cholerae B33]
 gi|227010381|gb|ACP06593.1| sensor histidine kinase FexB [Vibrio cholerae M66-2]
 gi|229344064|gb|EEO09039.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC9]
 gi|229352204|gb|EEO17145.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           B33]
 gi|229355070|gb|EEO19991.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae BX
           330286]
 gi|229369726|gb|ACQ60149.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           MJ-1236]
 gi|254845196|gb|EET23610.1| sensor histidine kinase FexB [Vibrio cholerae MO10]
 gi|255735354|gb|EET90754.1| aerobic respiration control sensor protein ArcB [Vibrio cholera
           CIRS 101]
 gi|262028815|gb|EEY47469.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           INDRE 91/1]
          Length = 785

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|320174576|gb|EFW49712.1| Aerobic respiration control sensor protein arcB [Shigella
           dysenteriae CDC 74-1112]
          Length = 778

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1620

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 11/220 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +A + K+ F+ ++S+E+R+P+  I+G + L L+T     L  KQ +Y+E +  S+  LL 
Sbjct: 735 EATKAKSDFLANMSHEIRTPMNAIMGLSHLALQTE----LTDKQRKYIEKVYRSAENLLG 790

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           ++NDILD + ++AG + + +    L D+   +   +  K  E  + +     G + + V 
Sbjct: 791 ILNDILDFSKIEAGKLDMEHVAFHLEDVFENMASMVGLKAEEAGLELLFDLPGNMPTLVG 850

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL QI   + +NA+ F+ +G  V    +++         FSVK+ G  + E+  K +
Sbjct: 851 DPLRLGQILINLGNNAVKFTPRGEVVVSARVIEETGTGAKLHFSVKDTGIGLSEEQRKKL 910

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F  F        R+  G GLGL+I +    L GG + + S
Sbjct: 911 FQHFSQADASTTRKYGGAGLGLAICKKLTELMGGDIWLES 950


>gi|188589604|ref|YP_001921680.1| two-component sensor histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499885|gb|ACD53021.1| two-component sensor histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 502

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 153/308 (49%), Gaps = 27/308 (8%)

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           P T++  +A       N+    D   +     +DE  +L  TL  LS +        L N
Sbjct: 204 PLTNLNTVA-------NKMSNMDFTVSCDVDREDEIGNLARTLNFLSKN--------LQN 248

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A        +TD  +  + L E  E  RK + ++  FV +VS+EL++P+  I G+ + LK
Sbjct: 249 A--------LTDLKQKNQKLEEDIEKERKLENMRKEFVDNVSHELKTPIGIIEGYAEGLK 300

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +   ++    Y+E I + S  +  LV ++L+L+ +++G +K    +  +N L++++ 
Sbjct: 301 DGIVSGDDA--LAYLETIISESQKMNTLVKNMLELSKLESGTIKPKLESFNINRLISKIL 358

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           ++   K  EN++++   S        AD  ++ Q+ + I++NA+ ++   + + +    +
Sbjct: 359 KNNHLKFEENDLKVNFNSSNPYSYVYADTFQMDQVITNIITNAIKYTPPHNLIDVSVNEE 418

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           N  F  S+KN G +IPE     +F++F  V  + +  +   GLGLSIV++ + LH    +
Sbjct: 419 NDKFKISIKNMGINIPESEINKLFDKFYRVDKSRQRTKDSTGLGLSIVKNILKLHNSEFN 478

Query: 774 ISSSDEGV 781
           + + D GV
Sbjct: 479 LKNIDNGV 486


>gi|116493099|ref|YP_804834.1| Signal transduction histidine kinase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103249|gb|ABJ68392.1| Signal transduction histidine kinase [Pediococcus pentosaceus ATCC
           25745]
          Length = 482

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 128/243 (52%), Gaps = 10/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L E N+ +++ +E + +F+   ++E+R+PLT I G  + L+   +   + ++S  V  +
Sbjct: 241 SLKESNDEIKRQEERRRAFMADAAHEMRTPLTTINGILEGLEYDAIPEDSKEES--VHLM 298

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-ENNIRIKVI 672
              +  L+ LVND LD   +    + LN   I L      + + +A K   EN++ I  +
Sbjct: 299 QRETKRLIRLVNDNLDYERLRTNKISLNRHQINLKQATQRISKQLAKKAKLENDVIIIDM 358

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIP 731
           +D  +    AD  RL+QI   I+ N + F+  G  T+  + A+D  D    + +NG  + 
Sbjct: 359 ADDVM--VYADTDRLIQILFNIIQNGIQFTQNGKITIRAQNAKDGTDI--QISDNGIGMT 414

Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+  K+++ R+  ++A R Q +G  GLG++IV   + +HGG +++ S+ E  TT     P
Sbjct: 415 EEQIKNIWERYYKADASRIQTKGESGLGMAIVHELMQVHGGQITVESTPEKGTTFKLHFP 474

Query: 790 SKE 792
            ++
Sbjct: 475 EQQ 477


>gi|283851415|ref|ZP_06368696.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573153|gb|EFC21132.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 773

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 12/227 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    EA   A+  K+ F+ ++S+E+R+P+  I+G T+L   + L  +  +  +Y+  + 
Sbjct: 378 LRSAKEAAEAANRAKSQFLANMSHEIRTPMNGILGMTEL---TLLMDMPPQAGEYLRLVL 434

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+++NDILDL+ +++G   L+     L++ L     ++A    E  + +    D
Sbjct: 435 QSGHALLDIINDILDLSKIESGHAVLDNKPFRLHECLGSTFNALAITAREKGLSLYHCID 494

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNG 727
             +    V D+ RL Q+   I+ NA+ F+ KG   +        A   +   +F V ++G
Sbjct: 495 SHVPEHIVGDQGRLRQVLINIVGNAIKFTPKGGVRVTVGRDGQPAPPGSARLLFQVADDG 554

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
             IP+D    VF+ F         R  G GLGLSI +S + + GG +
Sbjct: 555 IGIPKDGLGEVFHAFSQIGLSSHTRFGGTGLGLSISKSLVAMMGGRI 601


>gi|218532474|ref|YP_002423290.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218524777|gb|ACK85362.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 803

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL+ +IG++++L         ++    +  I +S+  LL L+ND+L
Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVL 347

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG + L   T  +  L+ +V  +  + + +   R ++  +G LG+   D+ +L 
Sbjct: 348 DISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLR 407

Query: 689 QIFSKILSNAMDFSSKGSTVI-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
           Q    ++ NA  FS  G  ++ ++  R+ G D++ FSV + G  + ++    +F RF   
Sbjct: 408 QSLINLIGNAAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQA 467

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                R+  G GLGL+I  +F+   GG + + S+     T   R+P
Sbjct: 468 DESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513


>gi|189191800|ref|XP_001932239.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187973845|gb|EDU41344.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 2314

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 20/250 (8%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + L++  + K+ F+ ++S+E+R+PL  I G  + L  S    LN++Q ++V  I AS+  
Sbjct: 1613 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNAEQLEHVNIIKASTDS 1669

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLG 678
            LLNL+NDILDL+ V+AG++KL+   + L  LL EV         +  + +  ++ +G   
Sbjct: 1670 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPA 1729

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDFI-FSVKNNGS 728
                D+ R+ Q+   ++ NA+ F+ +G   I             ++N   + F V + G 
Sbjct: 1730 EVKGDKFRIRQVLLNVVGNAIKFTERGEIFIRCKVQPPDRSPPLKENETMVRFEVIDTGQ 1789

Query: 729  SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT--- 782
               +   K +F RF  +  +   Q  G GLGL+I   F+ LHGG +   S+  +G T   
Sbjct: 1790 GFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFF 1849

Query: 783  TINCRIPSKE 792
            TI   +P+ E
Sbjct: 1850 TIKFGLPTAE 1859


>gi|182626605|ref|ZP_02954351.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|177908085|gb|EDT70658.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 821

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487
           +++G T +++ + +     +G+I   N A   +    E  L    +        N+    
Sbjct: 434 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546
           S+Y+NE         I+T   D+ +S +G ++L S S    S I   N    L +V V  
Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538

Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603
             + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     LL TSK    N 
Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598

Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L  ++  S+   +
Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +    D       
Sbjct: 659 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADETWVDIR 718

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IP  M + +F RF+ N     R   G G+GLS+V+S + LH G V +  S+E 
Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778

Query: 781 VTTINCRIPS 790
            +  +  +P+
Sbjct: 779 GSEFSILLPN 788


>gi|307261423|ref|ZP_07543096.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868880|gb|EFN00684.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 586

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +  K+  +  +S+ELR+PL  IIG + +L     G L  +Q +Y++ I+ S+ 
Sbjct: 75  NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 131

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++ +DI+DL  +D+  ++L    I  + L++++         +N I+  +     L 
Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           +F+  D  RL QI   ++SNA+ F+  G  + L   R DN  F FS+K+ G  IP+   +
Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 251

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VF  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 293


>gi|308069542|ref|YP_003871147.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858821|gb|ADM70609.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 480

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 35/345 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSL---WKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +S+ V  F   G+I L+NP  +SL   WK  E                   + E D  + 
Sbjct: 138 MSDAVITFDRSGQIILTNPPAQSLLDIWKKLE-------------------WQERD-LEE 177

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F A   S  +   SL  T+    + V +Y  +   +    +  +   +++R   A+    
Sbjct: 178 FGA---SVPEPLLSLFHTVMDRGEDVGDYIHVKKGSWSVQMAPLYTDNAIRGAVAVLRDI 234

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K +++++ FV +VS+E+R+PL+ + G+++ L     GS   +  + V+ I   S  
Sbjct: 235 TEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAGS-PEESEELVQVIHDESLR 293

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLG 678
           +  LV D+LDLA ++AG   ++   + +N+L+  V +    +  E  + +     G +L 
Sbjct: 294 MGRLVKDLLDLARMEAGHTDMHRQEVDVNELIERVHRKFTVRSKEQGLTLDYHEQGQRLL 353

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
              AD  RL Q+ + +L NA   +  G  V + A R  G+        +K+ G  I  + 
Sbjct: 354 LPEADEDRLEQVLTNLLDNAFRHTPGGKKVTIAADRILGERHELIRIRIKDEGVGIASED 413

Query: 735 CKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +F+RF        RG+ +G GLGL+IV++ +  HGG VS +S
Sbjct: 414 LPYIFDRFYKADKARVRGEDKGTGLGLAIVKNIVEAHGGSVSAAS 458


>gi|218291333|ref|ZP_03495293.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238779|gb|EED05993.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 429

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 25/244 (10%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY------- 612
           + +R+A + +  FV   S+ELR+PL  I         S LG +     Q VE        
Sbjct: 177 QPIRRAFQRQLEFVADASHELRTPLAVI--------QSNLGIVMEHTDQTVEENLEWLNN 228

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  L  LV D+L LA  D+  M +    + LN+LL+ +     T      I + V 
Sbjct: 229 AHGEARRLAKLVQDLLTLARSDSERMPVERRPVALNELLDRIHDLYETIAEMRGIELSVR 288

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           ++  L   + DR RL Q+   ++ NA+ F+  G  V + A R+    I SV++ G  I +
Sbjct: 289 AEEPL-VVLGDRDRLHQLLVILIDNAIKFTDAGGKVEIAATRNRNQAILSVRDTGIGIAK 347

Query: 733 DMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV---TTIN 785
           +  + VF+RF     + +  G+ +G GLGLSI +  +  HGG +SI+S  EG+   TT+ 
Sbjct: 348 EHLERVFDRFYTVDTARSRHGEAKGTGLGLSIAKWIVEAHGGRISIAS--EGIGKGTTVR 405

Query: 786 CRIP 789
             +P
Sbjct: 406 VELP 409


>gi|154147903|ref|YP_001406226.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
 gi|153803912|gb|ABS50919.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
          Length = 1385

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 128/235 (54%), Gaps = 18/235 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +T + EA   A++ K+ F+ ++S+E+R+PL  +IGFT+LL+ ++   L+ +Q  YV+ I 
Sbjct: 391 VTYQKEAAEDANKAKSIFLANMSHEIRTPLNGVIGFTELLRNTE---LDEEQQDYVDTIE 447

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN---DLLNEVKQSIATKMHENNIRIKV 671
            SS  LL ++N+ILD++ +++   K+    I+ N   D  + V+  +A K  E NI I +
Sbjct: 448 QSSENLLTIINNILDVSKIESN--KVELEDILFNPIQDFESAVEIYVA-KATEKNIDILL 504

Query: 672 ISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724
             D  L      D  ++ ++   ++SNA+ F+ +G  + ++  R   D        FSV+
Sbjct: 505 YIDPTLIHHLYGDITKIKEVLINLMSNAVKFTPEGGMIAVEIVRVKSDNPNEATVNFSVE 564

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           + G  I ED   +VFN F        R+  G GLGL+I   ++ + GG + + S+
Sbjct: 565 DTGVGIAEDKLVNVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLEVKST 619


>gi|310821132|ref|YP_003953490.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394204|gb|ADO71663.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 972

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 3/251 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF     +VRA     ++  AL + D  K +F  +VS+E R+PLT ++G  +   +S   
Sbjct: 303 TFTTAVSNVRAYEQEQQRAAALAEIDRAKTAFFSNVSHEFRTPLTLMLGPLEDSLSSHSE 362

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q +  + I  ++  LL LVN +LD + ++AG +K  Y    L  L  +V  +  +
Sbjct: 363 PLTPSQRERQQLIHRNALRLLKLVNTLLDFSRLEAGRVKATYRATNLPKLTADVASAFRS 422

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            M +  +  +V     L     D     +I   ++SNA  F+  G  V +K  +  G   
Sbjct: 423 AMEKAGLNYRVTVPDSLEPVYVDHDMWEKIVLNLISNAFKFTFHGE-VEVKLTQLEGRVR 481

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V++ G+ +PE     +F RF  V         G G+GL+++   + +HGG + + S +
Sbjct: 482 LTVRDTGTGVPEAELPRLFERFHRVETTQGRTFEGTGIGLALIMELVKMHGGILGVQSVE 541

Query: 779 EGVTTINCRIP 789
              +  +  +P
Sbjct: 542 NRGSAFHVELP 552



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 133/282 (47%), Gaps = 11/282 (3%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R   +  +E L     +Y + P  +A+ +L    + ++VR  R  +E+    R+  E++ 
Sbjct: 696 RAGEEARIEGLQAGANDYLVKPF-SARELL--ARIENAVRLARERSERERLARERGELEQ 752

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             +  VS++LR+P++ I+  T  L   ++G+L  + ++ V  I AS+   + ++ D+LD 
Sbjct: 753 QLIGIVSHDLRNPISAILMSTSFL--FRMGTLEERAAKVVTRIQASAERAMRMIRDLLDF 810

Query: 631 ATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
                 G +++      L  +     + +     E  +  + +   + G +  D  RL Q
Sbjct: 811 TQARLGGGLRIERRPAELQHIAWLAVEEVKLAHPERKVLFEAVGV-QTGEW--DDDRLFQ 867

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + + +++NA+ +S   ++V ++      +    V N G  I +++   +F       H G
Sbjct: 868 LLTNLITNAVKYSPSSTSVTVRLTGTQTEAQIDVHNEGEPISQELQARLFMPMQQGGHGG 927

Query: 750 QRRG--VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            R G  +GLGL IV   +  HGG +++ S+ E  TT   R+P
Sbjct: 928 DRAGRSIGLGLYIVSQIVRAHGGAINLLSTPEVGTTFTVRLP 969


>gi|307247923|ref|ZP_07529957.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250179|ref|ZP_07532137.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306855573|gb|EFM87742.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857778|gb|EFM89876.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 586

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +  K+  +  +S+ELR+PL  IIG + +L     G L  +Q +Y++ I+ S+ 
Sbjct: 75  NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 131

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++ +DI+DL  +D+  ++L    I  + L++++         +N I+  +     L 
Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           +F+  D  RL QI   ++SNA+ F+  G  + L   R DN  F FS+K+ G  IP+   +
Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 251

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VF  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 293


>gi|293369521|ref|ZP_06616100.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635406|gb|EFF53919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 1197

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 128/258 (49%), Gaps = 10/258 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592
           +L FV      RA+  +  + E +   K +EI   K  F  ++S+ELR+PL+ I+    +
Sbjct: 634 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 693

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  S L     +Q   ++Y+  +   LL++VN +LD    +AG+M ++ + + +  LL 
Sbjct: 694 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGVMPIHVAQVNVEGLLQ 751

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +          +  I   + SD +   F ADR  +  I   +LSNA  F+  G +++L  
Sbjct: 752 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSILLSL 811

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             +   + F+V+++G  +  +    +F RF      GQR+G G+GLS+V+  +  H G +
Sbjct: 812 WTEGDTYGFTVRDSGIGMSPEQLTRIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 869

Query: 773 SISSSDEGVTTINCRIPS 790
           +++S     T     +P+
Sbjct: 870 TVASEPAQYTEFKVTLPA 887


>gi|220911752|ref|YP_002487061.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219858630|gb|ACL38972.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 551

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 25/257 (9%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A +++ F +VTD V A  A              K+ FV  VS+E R+PLT+I+G+ ++L 
Sbjct: 316 AGSVIAFSDVTDLVNALAA--------------KDDFVSSVSHEFRTPLTSILGYVEILL 361

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +       Q + +E I  +S  LL LV+D+L       G + ++  T+ + +L+    
Sbjct: 362 ADEP---EESQEEMLEIIRRNSERLLTLVSDLL---ASRNGQLIVSPHTVDVAELVRTSV 415

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S   K   + + +   +  +L + V D  R+ Q+   ++SNA+ +S  G  V++  ARD
Sbjct: 416 SSALPKATASGVVLAAETPDQLEAHV-DGARISQVLDNLVSNAIKYSPDGGNVLVSLARD 474

Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +G     V + G  + PED    VF +F   SN  R    GVGLGL I ++ +  HGG +
Sbjct: 475 DGHLECRVTDTGMGMTPED-ASEVFAKFFRTSNVRRTAIPGVGLGLPISKAIVEAHGGTI 533

Query: 773 SISSSDEGVTTINCRIP 789
           S+ S+    TT   R+P
Sbjct: 534 SVDSTLGQGTTFTFRVP 550


>gi|254457575|ref|ZP_05071003.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207086367|gb|EDZ63651.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 736

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQS 607
           +R +    EK +A   A +IK+ F+ ++S+E+R+P+  I+G T L L+T     LN KQ 
Sbjct: 269 IRTKELEIEKKKA-EDATKIKSEFLANMSHEIRTPMNGILGMTHLALETD----LNDKQR 323

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y++ I  S+  LL ++NDILD + ++AG + +  +   +++++  V   +  K  E N+
Sbjct: 324 NYIQKIDNSAKSLLGVINDILDFSKIEAGKLSIEKADFNMSEVIENVIHVVELKADEKNL 383

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++ V  D  +   F  D  RL QI   +L NA+ F+  G   I         F F V + 
Sbjct: 384 KLTVNYDKNISKYFYGDSLRLRQILINLLGNAVKFTDSGEVSISLKKISKDRFRFEVSDT 443

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           G  + ++    +F  F        R+  G GLGLSI +  + L GG + + S +
Sbjct: 444 GIGLSQEKQSKLFKSFSQADGSITRKYGGTGLGLSISKQLVELLGGKIWVESKE 497


>gi|24214922|ref|NP_712403.1| two component system sensor histidine kinase\response regulator
           [Leptospira interrogans serovar Lai str. 56601]
 gi|45657575|ref|YP_001661.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|24195953|gb|AAN49421.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira interrogans serovar Lai str. 56601]
 gi|45600814|gb|AAS70298.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 832

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 7/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + ER + E  + L   D++K+ F  +VS+ELR+PLT I+G T  L   +   + S Q  +
Sbjct: 190 QREREIQEVYQRLFNMDQLKSQFFANVSHELRTPLTLILGPTRALLKDQ--GITSTQRTF 247

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +S  LL  VND+LDL+ +D+G M L YS   L++++  +     +   E NI  
Sbjct: 248 LETIERNSYTLLKHVNDLLDLSKLDSGKMTLKYSNANLSEVIRYIASHFDSITKERNIDF 307

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            ++          D  ++ +I   ++SNA  F      ++ +   +       + +NG  
Sbjct: 308 VLMIPENF-PIQMDVSKVERIILNLISNAFKFVPDSGKILCELKTEGTMASIYIADNGPG 366

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           IP  +   +F +F      G  R   G GLGL+IV+ F++LH G + +  S  G      
Sbjct: 367 IPIHLRDQIFEKF-RQIEEGDSRSFGGTGLGLAIVKEFVDLHLGSIGVFDSFLGGALFKV 425

Query: 787 RIP 789
           +IP
Sbjct: 426 QIP 428



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L  A+    SF   VS++LR+P+  I GF  ++       ++ +  + ++ +  +   
Sbjct: 598 ETLENANADMESFSYSVSHDLRAPILVIEGFLQIILEDFSEKMDPEALRSLKIVHKNVVY 657

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L+ D+L    V    + L    I ++ ++ +V  ++     + N   +V    +L +
Sbjct: 658 MNHLIQDLLSFHKVSK--IDLPIRLIEMDKMVQDVIATVLQNYPKKNYLFQV---DELPN 712

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSIPEDMCKS 737
            +A+   L Q++  ++SNA+ +SS   T  +K   +  D    + +++NG    +     
Sbjct: 713 ALANGAALKQVWMNLISNAVKYSSTRETPFIKIGFEEMDGFNNYFIEDNGVGFNKAYSNK 772

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +F  F     + +  G G+GL+IV   +  HGG V
Sbjct: 773 LFKVFQRLHTQEEFEGTGVGLAIVSKIVQRHGGQV 807


>gi|41016068|dbj|BAD07400.1| histidine kinase [Cochliobolus heterostrophus]
          Length = 682

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 16/231 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L++  + K+ F+ ++S+E+R+PL  I G  + L  S    LN++Q ++V  I AS+  
Sbjct: 76  QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNTEQLEHVNIIKASTDS 132

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLG 678
           LLNL+NDILDL+ V+AG++KL+   + L  LL EV         +  + +  ++ +G   
Sbjct: 133 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVDEGVPA 192

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDFI-FSVKNNGS 728
               D+ R+ Q+   ++ NA+ F+  G   I          +  ++N   I F V + G 
Sbjct: 193 EVKGDKFRIRQVLLNVVGNAIKFTEHGEIFIRCKLQPSDRSRPLKENETMIRFEVVDTGQ 252

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +   K +F RF  +  +   Q  G GLGL+I   F+ LHGG +   S+
Sbjct: 253 GFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSA 303


>gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 1111

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ 
Sbjct: 427 KLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVIPASQKYQLDI 486

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +     +    IRI   
Sbjct: 487 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQ 546

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L +  AD QRL Q+   ++ NA+ ++S+G  VI     D+   +  V + G  IP 
Sbjct: 547 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRV-QVVDTGQGIPA 605

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 606 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 664


>gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
          Length = 1183

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 8/213 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  IIG + L   ++L   N KQ  Y+E I   +  LLN++NDIL
Sbjct: 487 KSEFLANMSHEIRTPMNGIIGMSHLALQTRL---NDKQKNYIEKIDICAKNLLNILNDIL 543

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + ++AG + L      L + +  +   I   ++E N+ + V     +G +F  D  RL
Sbjct: 544 DFSKIEAGKLNLEKVEFNLFETIENIVNIIDFSVYEKNLELVVSYGTDVGKNFYGDNLRL 603

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI + +LSNA+ F++ G   +     D   + F +K+ G  + E+    +F  F S A 
Sbjct: 604 AQILTNLLSNAIKFTNDGQIGVYITKIDINRYQFEIKDTGIGLTEEQQTKLFQSF-SQAD 662

Query: 748 RGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
            G  R   G GLGL+I +  I L  G + + S 
Sbjct: 663 GGTTRKYGGTGLGLTISKQLIELMNGKIWVESQ 695


>gi|194366813|ref|YP_002029423.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
 gi|194349617|gb|ACF52740.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
          Length = 1175

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 12/239 (5%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+ ++ +E+R+P+T ++G ++LL  S L   + +Q  Y + I  + 
Sbjct: 799  KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPL---DPQQRGYTQSIRHAG 855

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL+LVND LDLA +++G ++L      L+ LL ++   +     +  +R  + +    
Sbjct: 856  EHLLHLVNDALDLARIESGRLELQSKPFALSRLLQDLAALMGPLAAQKGLRFTLDNQLPP 915

Query: 678  G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPED 733
            G     D  R+ QI   +LSNA+ F+S+G+  +   AR +G+     F V++ G  I ++
Sbjct: 916  GLQATGDAMRVRQILLNLLSNAVKFTSRGTITL--HARSDGELRALHFEVRDTGPGISQE 973

Query: 734  MCKSVFNRF-VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F RF  ++  R   Q  G GLGL+I         G + + S     T     +P
Sbjct: 974  QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLP 1032


>gi|254563550|ref|YP_003070645.1| hybrid histidine kinase [Methylobacterium extorquens DM4]
 gi|254270828|emb|CAX26833.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens DM4]
          Length = 803

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL+ +IG++++L         ++    +  I +S+  LL L+ND+L
Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVL 347

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG + L   T  +  L+ +V  +  + + +   R ++  +G LG+   D+ +L 
Sbjct: 348 DISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLR 407

Query: 689 QIFSKILSNAMDFSSKGSTVI-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
           Q    ++ NA  FS  G  ++ ++  R+ G D++ FSV + G  + ++    +F RF   
Sbjct: 408 QSLINLIGNAAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQA 467

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                R+  G GLGL+I  +F+   GG + + S+     T   R+P
Sbjct: 468 DESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513


>gi|114569266|ref|YP_755946.1| histidine kinase [Maricaulis maris MCS10]
 gi|114339728|gb|ABI65008.1| histidine kinase [Maricaulis maris MCS10]
          Length = 553

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 17/239 (7%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S  AE+    + EAL  A + K+ F+  +S+E+R+PL  ++G T LL+ +   +L+++Q+
Sbjct: 141 SALAEQLGRARLEAL-AASKAKSDFLATMSHEIRTPLNGVLGVTQLLQAT---TLDAEQA 196

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V  I  S  ILL L+NDILDL+ ++AG M+L  +    + L+ + +   + +  E  I
Sbjct: 197 EFVRVIDDSGKILLRLLNDILDLSKIEAGKMELEVTPFRPSTLVRDAQTLWSAQAREKGI 256

Query: 668 RIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
              + +D  +   +  D  R+ Q+   ++SN + F+  GS  +    L   R        
Sbjct: 257 AFSIEADCDEDAQYEGDPVRIKQLLFNLISNGIKFTQSGSVAVRMQFLPLGRRRNVMRVE 316

Query: 723 VKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V + G  IP+   + +F+ F      +N   G   G GLGL+I      L GG V ++S
Sbjct: 317 VVDTGCGIPDTALRELFSAFKQADVATNRLHG---GTGLGLAICRRLAELMGGSVDVTS 372


>gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus 10329]
          Length = 1128

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ 
Sbjct: 444 KLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVIPASQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +     +    IRI   
Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQ 563

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L +  AD QRL Q+   ++ NA+ ++S+G  VI     D+   +  V + G  IP 
Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRV-QVVDTGQGIPA 622

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681


>gi|255530497|ref|YP_003090869.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343481|gb|ACU02807.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 528

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 136/279 (48%), Gaps = 24/279 (8%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-------KADE------ 567
           LS   ++Y   PL    T     +    +R +R + +KN+ L        KA E      
Sbjct: 97  LSTGAVDYLYKPLDPYVTAAKVDSFIQFIRNQREVKKKNKELEAYQKELIKAKELAETGK 156

Query: 568 -IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            IK++F+ ++S+E+R+P+  IIG   LLK ++L     +Q + V  +  SS  LL ++ND
Sbjct: 157 RIKDNFLANMSHEIRTPINGIIGIAQLLKKTEL---TDEQREMVNLLEISSNSLLGVIND 213

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           +LDL+ +++G  K+N +   +  +   V   +     E  + +K+  D +L   + AD  
Sbjct: 214 VLDLSKIESGKFKINRTATDIIKICESVVDLLRIPSIEKKLDLKLALDSELPKMILADSL 273

Query: 686 RLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           RL QI   ++ NA+ F+ +GS      IL    +N    FSV + G  I ++    +F  
Sbjct: 274 RLNQILMNLIGNAIKFTHQGSVTLKVEILNRKGNNLQLRFSVADTGIGIAKENIDKIFET 333

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F     +   +  G GLGLSIV++   L GG + + S +
Sbjct: 334 FEQADEQTTIKFGGTGLGLSIVKNLAKLKGGTLEVISEE 372


>gi|197121582|ref|YP_002133533.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196171431|gb|ACG72404.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 601

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 116/235 (49%), Gaps = 10/235 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E   A+R  D++    +  VS++L++PL  I   + LL  S       +  ++ E I  S
Sbjct: 377 EAQRAIRARDDV----LAIVSHDLKNPLEAIYLSSALLLRS---GAAPRLRRHAETIQRS 429

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  +  L+ ++LDL++++AG + +      L+ ++ E    ++    E  I +   + G 
Sbjct: 430 AARMDRLIRELLDLSSIEAGRLVVEPRPEPLDAVVEEALAGLSPLALERGIALGADTGGA 489

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 DR+R+LQ+ S ++ NA+ F+ +G  V ++A     +    V+++G  I     +
Sbjct: 490 REPVPCDRERILQVLSNLVGNALQFTPRGGHVTVRATLAPAEARVEVRDDGPGIAPAQLR 549

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            VF+R+  +   G RRG GLGLSI +  +  HGG + + S     +T    +P +
Sbjct: 550 RVFDRYWKS---GSRRGSGLGLSIAKGLVEAHGGRIEVESRLGAGSTFRFTLPRR 601


>gi|226947567|ref|YP_002802658.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226842367|gb|ACO85033.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 615

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 122/231 (52%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++   F+ ++S+EL++PL  I     LL   +      KQ +Y++ I  +   L+ 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMK 415

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD   +D+G +KLN     + +L+ E+  S+ +      I I   ++ +      
Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741
           D  ++ +I   +LSN++ F++ G  + +   +D G+ ++  VK+ G  IP D  +S+F R
Sbjct: 476 DTDKIERIILNLLSNSIKFTNAGGNIFVN-VKDCGENVYVHVKDTGVGIPSDKLESIFER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  V    +  + G G+GL +V+SF+ +H G V+I S     T    ++P+
Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTIKSELGQGTEFIIKLPA 585


>gi|153825882|ref|ZP_01978549.1| sensor histidine kinase FexB [Vibrio cholerae MZO-2]
 gi|149740380|gb|EDM54511.1| sensor histidine kinase FexB [Vibrio cholerae MZO-2]
          Length = 785

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|228921981|ref|ZP_04085292.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837589|gb|EEM82919.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 448

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++  + +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447


>gi|158334668|ref|YP_001515840.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304909|gb|ABW26526.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 546

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 553 RALTE--KNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           R +TE  K EA+++A        E+K  F    S+E R+PL+ I+    +L +S+  SL+
Sbjct: 286 RDITERQKMEAMQRALEQEQELSELKLRFFSMASHEFRTPLSVILMAAQILGSSESQSLD 345

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +KQ + +E I  S+  L  ++ DILD+A ++A   + N   + +  + + +  +  T  H
Sbjct: 346 NKQQRNIERIHTSAQYLKKMLADILDIARLEAQKREFNPRPVCVKTMCDRILDTQQTS-H 404

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
               RI+    G       D      I + +L+NA+ +S+    V +K  ++       +
Sbjct: 405 GGIPRIRCAYTGLSAEIALDPDLFQSILNNLLANALKYSAPEQLVQVKLTQELDQIELMI 464

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  IP+     +F  F    + G+  G GLGL+IV+  ++LHGGH+S  S   G TT
Sbjct: 465 IDQGIGIPKASQSQLFEAFHRGDNVGEIEGSGLGLAIVKKCVDLHGGHLSFVSEASG-TT 523

Query: 784 INCRIP 789
              R+P
Sbjct: 524 FTVRLP 529


>gi|152994992|ref|YP_001339827.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150835916|gb|ABR69892.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 1154

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +RAL    E   +A+E K+ ++  +S+ELR+PL +IIG+  LL  S+  +  S     ++
Sbjct: 672 DRALQNAKEQAERANEAKSRYLTGISHELRTPLQSIIGYAQLL--SEKANTPSGHQNGLD 729

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   L +L+  +LD++ ++AG   L  +T+ L  L++++    A +  +  I+++ 
Sbjct: 730 IIHRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPKLIDQLNSMFAMQARDKGIQLQS 789

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                L    V D +RL QI   +LSNA+ ++ KGS V+ +    N    F +++ G  I
Sbjct: 790 KILAPLPQHVVTDEKRLRQILINLLSNAVKYTPKGS-VLFEVNYRNQVAEFVIRDTGVGI 848

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            E   K +F+ F  V +   G   G GLGL+IV+    + GG +   S
Sbjct: 849 KEGHLKRIFDPFERVRDVSTGNLPGTGLGLTIVKLLTEIMGGDIQAHS 896


>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
          Length = 1268

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 127/243 (52%), Gaps = 16/243 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  ++ E  L +  E    A++ K+ F+ ++S+E+R+P+  ++G   L+  S   +L+
Sbjct: 512 DLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANS---TLD 568

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y+E   +++  LL L+NDILD + ++AG ++L+     L DLL ++    ++   
Sbjct: 569 QRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAE 628

Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
           +  + +   V +D      + D  R+ Q+   ++ NA+ F+ KG   IL + R       
Sbjct: 629 QKGLEVLYDVTADVP-EHLLGDSFRIKQVLINLVGNAIKFTDKGE--ILISIRSQSLPEG 685

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +  FS+K+ G  I  +   ++F+ F        RR  G GLGL+I +  +NL GG + 
Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745

Query: 774 ISS 776
           + S
Sbjct: 746 VES 748


>gi|22095656|sp|O81122|ETR1_MALDO RecName: Full=Ethylene receptor
 gi|3411051|gb|AAC31123.1| ethylene receptor [Malus x domestica]
          Length = 741

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
               ++Q   VE I  SS +L  L+ND+LDL+ ++ G ++L  +T  L+ +  EV   I 
Sbjct: 375 ---TAEQRLMVETILRSSNLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNMIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
               +   ++ + + +D  + + + D +RL+Q    ++ NA+ FS +GS  I       +
Sbjct: 432 PVASIKRLSVTLNIAADLPMYA-IGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSE 490

Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + RD    DF              VK++GS I P+D+ K +F +F        R   G G
Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQALATRNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574


>gi|307252561|ref|ZP_07534456.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859966|gb|EFM91984.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 586

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +  K+  +  +S+ELR+PL  IIG + +L     G L  +Q +Y++ I+ S+ 
Sbjct: 75  NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 131

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++ +DI+DL  +D+  ++L    I  + L++++         +N I+  +     L 
Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           +F+  D  RL QI   ++SNA+ F+  G  + L   R DN  F FS+K+ G  IP+   +
Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 251

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VF  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 293


>gi|83858886|ref|ZP_00952408.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853709|gb|EAP91561.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 570

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+ ++S+E+R+PL  ++G T +L  SKL   + +Q + VE I  S   LL+ +N
Sbjct: 181 NQAKSQFLANMSHEIRTPLNGVLGMTAVLALSKL---DERQRKAVEVIRMSGDHLLSTLN 237

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF---VA 682
           DILDLA +DAG M +     VL D+  +++   A +  +  +   +  +  + +    V 
Sbjct: 238 DILDLAKIDAGQMDVETVEFVLGDVAEQIEALYAPQAEKAGLSFSLRYEQGVSAHSLRVG 297

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFN 740
           D  RL QI   ++SNA+ F+ KG  V L  A+D    + I  V++ G  +  D  + VF 
Sbjct: 298 DPTRLSQIVHNLVSNALKFTRKGG-VRLSFAQDEDTEELILRVRDTGCGMTVDQLERVFM 356

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F        R   G GLGLSIV+  + +  G + + S  +  T     +P
Sbjct: 357 PFTQADASTSREYGGTGLGLSIVKRLLEVMKGRIDVESEPDVGTLFTVYLP 407


>gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1111

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ 
Sbjct: 427 KLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVIPASQKYQLDI 486

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +     +    IRI   
Sbjct: 487 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQ 546

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L +  AD QRL Q+   ++ NA+ ++S+G  VI     D+   +  V + G  IP 
Sbjct: 547 VPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRV-QVVDTGQGIPA 605

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 606 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 664


>gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
 gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
          Length = 1468

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 13/250 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L ++ + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y
Sbjct: 898  QARQELEDRAKQLALASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPARNLTAKQVEY 957

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ T LL L+NDILDL+ ++AG M ++  ++ L  LL+ V+ +      E  +R 
Sbjct: 958  ANVIHSAGTDLLQLINDILDLSKIEAGKMNISLESLPLRQLLDYVEATFRPLTTEKGLRF 1017

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAAR-------DNGDF 719
             V ++    G  + D QRL Q+   +LSNA+ F+  GS    I +A R            
Sbjct: 1018 DVTVASDVPGELLMDEQRLRQVLRNLLSNAVKFTETGSVQLRIERAGRMELLGVPGQETL 1077

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISS 776
             F V + G  I E+    +F+ F        R+  G GLGLSI      L  G + ++S+
Sbjct: 1078 AFHVVDTGIGIAEENLSQIFDAFQQADGTTSRKYGGTGLGLSISREIAALFNGEIRAVSA 1137

Query: 777  SDEGVTTINC 786
              EG T   C
Sbjct: 1138 LGEGSTFSLC 1147


>gi|254488875|ref|ZP_05102080.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
 gi|214045744|gb|EEB86382.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
          Length = 723

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 141/292 (48%), Gaps = 24/292 (8%)

Query: 519 ELLSDSVLEYSIIPLPNAQ------------TMLTF-VNVTDSVRAERALTEKNEALRKA 565
           E L D+  E ++I L N Q             M++  +++T +V  ER L E +     A
Sbjct: 153 ERLQDTAPEPTVIHLWNGQHIKLIDQRSPSGDMVSLGLDITATVEYERQLQEAHSIAESA 212

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K++F+ ++S+E+R+P+  ++G  D+L+ +    L   Q  YV+ I  S   LL ++N
Sbjct: 213 NRAKSAFLANMSHEIRTPMNGVVGMADVLRDT---DLTEDQRLYVDTIKNSGEALLVIIN 269

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           D+LD + ++A  + L+     L   + EV   +     E  + + +  D  +  + V D 
Sbjct: 270 DVLDYSKIEAKKLDLHPEPFDLERAIQEVIMLLQPLAREKGLEMALDYDLFMPTTLVGDP 329

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFI--FSVKNNGSSIPEDMCKSVF 739
            R+ Q+ + +L NA+ F+S G  ++       ++ G      ++++ G  I  DM   +F
Sbjct: 330 GRIRQVLTNLLGNAVKFTSDGHVLVRVTGVPDKETGKVQVNIAIEDTGIGIAPDMVDHIF 389

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F  V N    +  G GLGL+I +  I +  G + ++S ++  +    ++P
Sbjct: 390 GEFNQVENERNRKFDGTGLGLAISQRLIQMMEGDIWVTSEEQAGSCFGFKLP 441


>gi|298500269|ref|ZP_07010074.1| sensor histidine kinase FexB [Vibrio cholerae MAK 757]
 gi|297540962|gb|EFH77016.1| sensor histidine kinase FexB [Vibrio cholerae MAK 757]
          Length = 785

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|320354604|ref|YP_004195943.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320123106|gb|ADW18652.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1626

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 120/239 (50%), Gaps = 9/239 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++TD   A  AL    E    A   K+ F+ ++S+E+R+P+  I+GF  L+K      L 
Sbjct: 867  DITDEREASAALHAAKERAEAATRAKSEFLANMSHEIRTPMNAILGFAHLIKRD---PLT 923

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q   +E +SA++  LLN++NDILD++ ++A  M+L      L  +++ +   +A  + 
Sbjct: 924  PSQLAQLEKLSAATHHLLNIINDILDISKIEANKMELGVEDFDLARIIDRIAALVADSVL 983

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI 720
              ++ + V  D        D  RL QI   ++SNA+ F+ +G+   TV +  AR++   +
Sbjct: 984  AKHLELFVDLDHVPSMLRGDGSRLGQILLNVVSNAIKFTEQGAVDITVRVVDAREDRPVL 1043

Query: 721  -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F +++ G  +  +  +  F  F        RR  G GLGL+I    + L GG + + S
Sbjct: 1044 RFEIRDTGIGMSAEQVERAFLPFEQADSSMTRRFGGTGLGLTISRQLVELMGGRMGVES 1102


>gi|298245291|ref|ZP_06969097.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297552772|gb|EFH86637.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 852

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 9/237 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQSQYVEYISAS 616
           N A ++ ++ K+ F+   S+ELR+PLT +     L++    K G LN   +  +  +   
Sbjct: 618 NSARKELEQRKDGFISMASHELRNPLTALKMQAQLVRKRLEKQG-LNGAAAA-LSGVEGP 675

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+    
Sbjct: 676 VKQLERLIGELLDVSKIQAGRLEYRQETVDLDALLHEVADTMQQIHTTHTI---VVRGAA 732

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             S V D+ RL Q+F  +LSNA+ +S    TV +  +         V+++G  IP +   
Sbjct: 733 PCSLVGDKDRLGQVFINLLSNAIKYSPAAETVEIDLSTSRETVTVRVRDHGFGIPREQRD 792

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            VF RF   A   Q+   G+G+GL IVE  +  HGG +++ S     +T    +P K
Sbjct: 793 KVFERFYRAAGPKQKAIPGLGMGLYIVEEIVKRHGGTITVDSEVGKGSTFTVTLPRK 849


>gi|238757450|ref|ZP_04618635.1| Multi-sensor hybrid histidine kinase [Yersinia aldovae ATCC 35236]
 gi|238704212|gb|EEP96744.1| Multi-sensor hybrid histidine kinase [Yersinia aldovae ATCC 35236]
          Length = 923

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 11/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  +   +A++ K+  +  +S+E+R+PL   +G  +LL+ +    L+ +Q Q  E  
Sbjct: 362 ALAKSKQVAEQANQRKSEHLTTISHEIRTPLNGALGAVELLQNT---PLSPEQMQLAETA 418

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671
              S  LL ++N++LD + +++G M L+     L  LL++   +I + +    I +   V
Sbjct: 419 RQCSFSLLAIINNLLDFSRIESGQMTLSQEKTALLPLLDQAMLTIHSLVLNKPIALSTYV 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI- 730
            SD  L     D QRL QI   +L NA+ F+ +GS + L   R      FSV++ G  I 
Sbjct: 479 SSDVPL-ELELDSQRLKQILINLLGNAVKFTQQGS-ISLHVCRKGQKLCFSVEDTGCGID 536

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           P++  + +F  FV N+   Q  G GLGL+I ++   + GGH+ ++S  +  +  +  +P 
Sbjct: 537 PQNQLR-IFQPFVQNSDYAQ--GTGLGLTIADNLAGMMGGHLVLTSQTDRGSRFSLILPL 593

Query: 791 KE 792
            E
Sbjct: 594 SE 595


>gi|219852259|ref|YP_002466691.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219546518|gb|ACL16968.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 478

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 137/273 (50%), Gaps = 24/273 (8%)

Query: 531 IPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +P+ N +      ++   ++++  +AE +L E    L++++E    F    S++L+ PL 
Sbjct: 214 VPMLNPEGECDSVLVVATDISERKKAEESLKEYAGRLQRSNEDLQRFAYIASHDLQEPLR 273

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I+ ++ +L     G L++   +++EYI      +  L+ D+L  + ++A   +   + I
Sbjct: 274 SIVSYSQMLDRRYRGKLDADADEFLEYIVEGGLRMQMLIQDVLAFSRINASEPQFTETNI 333

Query: 646 --VLNDL---LNEVKQSI-ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             VL D+   LN++ QS  AT  HE            L   +ADR +++Q+F+ ++SNA+
Sbjct: 334 EAVLVDVEEGLNQMIQSSGATITHE-----------PLPMVMADRMQMVQLFTNLISNAV 382

Query: 700 DFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
            F   G   ++  +A R    + FSV +NG  I  D  + +F  F     R +  G G+G
Sbjct: 383 KFHRPGVVPMIHVRAGRIGQFWEFSVADNGIGIESDYFERIFVIFQRLHTRQEYEGTGIG 442

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I    ++ HGG + ++S+    TT    +P+
Sbjct: 443 LTIARKILDRHGGQIRVTSTVGRGTTFYFTLPA 475


>gi|91790296|ref|YP_551248.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91699521|gb|ABE46350.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 839

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 4/231 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ D +K+ FV  VS+ELR+PLT+I G   L+     G L  K    V     +   L+
Sbjct: 465 LKRIDRMKSEFVSTVSHELRTPLTSIRGSLGLVWGGVTGELPEKAKALVGIAKNNCERLI 524

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILD   +++G M+     + L+ LL +V  +      ++ +++ V+  G+    V
Sbjct: 525 RLINDILDSEKIESGKMRFEMQPVELDPLLEQVLAANEGFAAQHQVKL-VLRTGRRPVLV 583

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+ + +LSNA+ FS    TV +      G     + + G  IPE+  + +F 
Sbjct: 584 NVDSDRLTQVVTNLLSNAIKFSPAEGTVQVLLRSGAGRVRVEISDKGPGIPEEFRQHIFQ 643

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F     +   QR G GLGLSI ++ +    G +  ++     TT    +P
Sbjct: 644 KFSQADASDTRQRGGTGLGLSISKAMLERMEGSIGFTTEQNVGTTFFFELP 694


>gi|303251394|ref|ZP_07337571.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649748|gb|EFL79927.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 616

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +  K+  +  +S+ELR+PL  IIG + +L     G L  +Q +Y++ I+ S+ 
Sbjct: 105 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 161

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++ +DI+DL  +D+  ++L    I  + L++++         +N I+  +     L 
Sbjct: 162 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 221

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           +F+  D  RL QI   ++SNA+ F+  G  + L   R DN  F FS+K+ G  IP+   +
Sbjct: 222 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 281

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VF  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 282 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 323


>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
          Length = 1268

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 127/243 (52%), Gaps = 16/243 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  ++ E  L +  E    A++ K+ F+ ++S+E+R+P+  ++G   L+  S   +L+
Sbjct: 512 DLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANS---TLD 568

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y+E   +++  LL L+NDILD + ++AG ++L+     L DLL ++    ++   
Sbjct: 569 QRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAE 628

Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
           +  + +   V +D      + D  R+ Q+   ++ NA+ F+ KG   IL + R       
Sbjct: 629 QKGLEVLYDVTADVP-EHLLGDSFRIKQVLINLVGNAIKFTDKGE--ILISIRSQSLPEG 685

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +  FS+K+ G  I  +   ++F+ F        RR  G GLGL+I +  +NL GG + 
Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745

Query: 774 ISS 776
           + S
Sbjct: 746 VES 748


>gi|218887627|ref|YP_002436948.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758581|gb|ACL09480.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 874

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 179/394 (45%), Gaps = 47/394 (11%)

Query: 416 FENLTVQV--DLETKYNTLVKVQGETID----HLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            EN+ ++   DLE    T  +   E ID     +SEG+ V  PD R+ L+NPA   +   
Sbjct: 506 LENMVLERTRDLEQALGT-AESHREKIDLILRSVSEGLLVTDPDHRVVLTNPAAEDILGL 564

Query: 470 EENRLSPGTHIRNIAATC-------SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                +PG  +    A          R  +  D  D        F   R +  G +   +
Sbjct: 565 A----APGDLVAEAVADLIEDAPLRKRLVHCLD--DTMGGAPCQFGFSRPTEAGGVHHYT 618

Query: 523 DSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            S  E       +A    T  V V   V +ER L          D +KN F+   ++ELR
Sbjct: 619 ASTSEVR-----DAGGGRTGVVTVLHDVTSEREL----------DRMKNEFLTTAAHELR 663

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKL 640
           +PLT I+GF++LL T     L  +Q QY+ YI+  + ++  +V D+LD++ ++ G    L
Sbjct: 664 TPLTTILGFSELLVTGGDIPL-VEQRQYLGYINEQAALVSGIVADLLDISRIEMGQGFSL 722

Query: 641 NYSTIVLNDLLNEVKQSIATKM---HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
                   DL+  +++ +A  +     ++ R+ ++ +  + + V D  ++ Q+   +LSN
Sbjct: 723 KRRPC---DLVALIRRKVAAHIVGTRRHSFRL-LLPETPVPAVV-DADKVAQVLDNVLSN 777

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGL 756
           A+ +S  G  V ++          SV++NG  +  +    +F +F   +A      G GL
Sbjct: 778 AVKYSPGGGVVEVRLRPGQDAHEVSVRDNGMGMSPEQLSRMFEKFYRGDASNTGIPGTGL 837

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           G+SIV+  I  HGG V++ S+ +  TT+   +P+
Sbjct: 838 GMSIVKHLIEAHGGEVAVESAKDVGTTVRFTLPT 871


>gi|165976354|ref|YP_001651947.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|303252978|ref|ZP_07339133.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|165876455|gb|ABY69503.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|302648169|gb|EFL78370.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
          Length = 616

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +  K+  +  +S+ELR+PL  IIG + +L     G L  +Q +Y++ I+ S+ 
Sbjct: 105 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQREYLKTINISAV 161

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++ +DI+DL  +D+  ++L    I  + L++++         +N I+  +     L 
Sbjct: 162 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 221

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           +F+  D  RL QI   ++SNA+ F+  G  + L   R DN  F FS+K+ G  IP+   +
Sbjct: 222 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 281

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VF  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 282 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 323


>gi|152983809|ref|YP_001351594.1| alginate biosynthesis sensor protein KinB [Pseudomonas aeruginosa
           PA7]
 gi|150958967|gb|ABR80992.1| alginate biosynthesis sensor protein KinB [Pseudomonas aeruginosa
           PA7]
          Length = 595

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 162/352 (46%), Gaps = 47/352 (13%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            +D + +G+ +F   GRI+ +NP A R L+ + +     G  I  I              
Sbjct: 263 VLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPH---GKRIDEILGDEG--------- 310

Query: 498 DLFAAIITSFDDERKSLQGTL--ELLSD---------SVLEYSIIPL--PNAQTMLTFVN 544
            L  A+        K+LQG +  E + D          +L +S+ P+  P   ++   + 
Sbjct: 311 -LREAV-------EKALQGEVQDEAMPDLEVDVAGESRLLAWSLYPVTHPGGHSVGAVLV 362

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V D       +TE+    R  + +++ FV   S+ELR+P+T +     LL+        S
Sbjct: 363 VRD-------VTEQ----RAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAES 411

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +++  ++ +    + L+ L+ND+L+ +    G+ KL  +T  L DLL + +Q    K   
Sbjct: 412 READLIQTVDEEMSRLVLLINDLLNFSRYQTGMQKLELTTCNLVDLLTQAQQRFVPKGEA 471

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + +++    +L     DR ++ ++   +L NA+  SS+   + L+A R     + +V+
Sbjct: 472 RRVSLELELGEELPHLQLDRLQIERVIDNLLENALRHSSESGQIHLQARRQGDRVLIAVE 531

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +NG  IP      +F  FV    +  + G GLGL++ +  I LHGG +++ S
Sbjct: 532 DNGEGIPFSQQGRIFEPFVQVGRK--KGGAGLGLALCKEIIQLHGGRIAVRS 581


>gi|332655192|ref|ZP_08420933.1| sensor histidine kinase KdpD [Ruminococcaceae bacterium D16]
 gi|332516052|gb|EGJ45661.1| sensor histidine kinase KdpD [Ruminococcaceae bacterium D16]
          Length = 879

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 146/270 (54%), Gaps = 13/270 (4%)

Query: 532 PLPNAQTMLTFVNVTDSVRA---ERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTN 586
           PL + +T + F  + +   A   ++ L EK  A  L K ++++ + ++ +S++LR+PLT+
Sbjct: 609 PLDSFETSILFSVLGECALALENQKNLEEKEAAAVLAKNEQLRANLLRSISHDLRTPLTS 668

Query: 587 IIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           I G   +LL    L    +K+  Y + I   +  L+NLV ++L ++ ++ G M L+ ST 
Sbjct: 669 ISGNANNLLSNGNLFDTKTKEQMYTD-IYDDAMWLINLVENLLSVSRLEEGRMNLHVSTE 727

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           ++++++ E  + I  K  E ++ ++   +  L     D + ++Q+   I+ NA+ ++  G
Sbjct: 728 LMDEIVAEALRHINRKSVEYHLNVQSSEEYLL--VQVDAKLIIQVIINIVDNAIKYTPPG 785

Query: 706 STVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
           + + +   R  G+ ++ SV +NG  IP+     +F+ F  VSN     RR +GLGL++ +
Sbjct: 786 TEIDI-GWRKQGNLVYVSVSDNGPGIPDQAKPHIFDMFYSVSNQIADSRRSMGLGLALCK 844

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           S IN HGG ++++      +     +P+ E
Sbjct: 845 SIINAHGGEITVTDQLPHGSIFTFSVPAGE 874


>gi|307256989|ref|ZP_07538765.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864473|gb|EFM96380.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 586

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +  K+  +  +S+ELR+PL  IIG + +L     G L  +Q +Y++ I+ S+ 
Sbjct: 75  NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTDQQREYLKTINISAV 131

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++ +DI+DL  +D+  ++L    I  + L++++         +N I+  +     L 
Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           +F+  D  RL QI   ++SNA+ F+  G  + L   R DN  F FS+K+ G  IP+   +
Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQR 251

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VF  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHS 293


>gi|189423636|ref|YP_001950813.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419895|gb|ACD94293.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 947

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 127/249 (51%), Gaps = 11/249 (4%)

Query: 537 QTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           Q +L  V ++++  ++ + L +  +A  +A   KN F+ ++S+E+R+PL  I+G + LL+
Sbjct: 538 QRLLAVVRDISERKQSMQELQQARDAALQATTAKNEFLANMSHEVRTPLNGIMGLSQLLR 597

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T+   SL  +Q+ Y++ + +S+  LL L+NDILD++ ++AG + +  +      LL EV 
Sbjct: 598 TT---SLTEEQAGYMDMLDSSARNLLVLINDILDISRIEAGSLTIRQTAFSPAKLLREVA 654

Query: 656 QSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----L 710
                   E  I + ++   +L  + + D  RL Q+   ++ NA+ F+S G   +    L
Sbjct: 655 GMYEKAAAEKGIGLDILPCDELPAALIGDPLRLRQVLINLVGNAIKFTSHGGVTLRVDCL 714

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
           + +       F V ++G  +  +  + +F+ F        R   G GLGL+I      L 
Sbjct: 715 EESATGIRLGFEVSDSGIGMSAETLQKIFHPFTQADASTSRVHGGSGLGLAICRRLSELM 774

Query: 769 GGHVSISSS 777
           GG +   SS
Sbjct: 775 GGSIRAESS 783


>gi|114321577|ref|YP_743260.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227971|gb|ABI57770.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 629

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 122/235 (51%), Gaps = 12/235 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  ++  +A+  K+ F+ ++S+ELR+PL  I+GF  L   +   + +  Q + + ++ 
Sbjct: 277 LEQARQSAEEANRAKSVFLANMSHELRTPLNAILGFARLAGQAPQATPD--QREQLGFVE 334

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +   LL+L+ND+LD+A +++G   L    + L   L +  +++  +     + + + ++
Sbjct: 335 RNGEHLLSLINDVLDMAKIESGRQTLEEGVVDLPRTLEDAVEALRHRAEGKGLTLTLEVA 394

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNN 726
           +      ++D ++L QI   ++SNA+ ++  G  V+L A R + +        + +V + 
Sbjct: 395 EDLPRHILSDGRKLRQILINLVSNAVKYTDAGR-VVLSARRQSAEPSGGHDGLLLAVADT 453

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEG 780
           G  IP +    VF  FV +   G   G GLGL I   F+ L GG + + S+S EG
Sbjct: 454 GRGIPVEDQDRVFEPFVQSGRVGTTEGTGLGLPITREFVELMGGEIGLESTSGEG 508


>gi|330878979|gb|EGH13128.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 908

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +G  +S+     +
Sbjct: 459 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 514

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 515 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 574

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A     + +F V ++G 
Sbjct: 575 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 633

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 634 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 692

Query: 789 PSKE 792
           P  E
Sbjct: 693 PMHE 696


>gi|307701336|ref|ZP_07638357.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Mobiluncus mulieris FB024-16]
 gi|307613497|gb|EFN92745.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Mobiluncus mulieris FB024-16]
          Length = 272

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 113/214 (52%), Gaps = 5/214 (2%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +++E+RSPLT +IG ++LL+    G L+ +Q + V  I  ++ +L ++  D L  A +DA
Sbjct: 51  LAHEIRSPLTVLIGNSELLQDKTFGELSERQQEMVSRIETNAHLLQDMAEDFLTAARIDA 110

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
            + +L   T  +  L  +V   +++  H N   + V   G+     ADR+ + Q  S ++
Sbjct: 111 ELFELKLQTFDIVGLTRQVAADLSSARHAN---VTVTRRGRPIWVQADRRLIQQALSNLI 167

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           +NA++ +   + + ++  R++   +  + ++GS + E   K +F  FV+   R  + G G
Sbjct: 168 NNAINHAGIDAPITIRPYRNDEGCVIEISDSGSGMSESERKRIFEPFVTGNTR--QPGAG 225

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LG+ I +  I LH G + + S  +  TTI   +P
Sbjct: 226 LGMMITQKIITLHQGRILVDSITQHGTTIFVVLP 259


>gi|114770341|ref|ZP_01447879.1| Na+/solute symporter [alpha proteobacterium HTCC2255]
 gi|114549178|gb|EAU52061.1| Na+/solute symporter [alpha proteobacterium HTCC2255]
          Length = 886

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 5/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L + N  L +    K+ F+ HVS+ELR+P+T+I  F+++L++++   L+  Q +Y
Sbjct: 646 RAASELMDANSKLTELGTQKDEFLSHVSHELRTPMTSIRSFSEILQSNE--KLDKDQLKY 703

Query: 610 VE-YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               I+  S  L  L+++ILDL+ +++G +KLN S + LN++L    QS    +  +N  
Sbjct: 704 FSTIINDESKRLTRLLDEILDLSFLESGQVKLNISNLRLNEILQTALQSTQQSIANSNAL 763

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNG 727
           ++   +        D  RL Q+F  +++NA+ ++ K   T+ +   +DN     S ++NG
Sbjct: 764 LEFDVNFTNTKIQTDPDRLSQVFINLITNAVKYNDKSQPTLKISCQKDNDFLCVSFQDNG 823

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IPE     +F +F   ++     GVGLGL+I +  +   GG +    S  G      +
Sbjct: 824 PGIPEAKHTIIFEKFTRLSNTENSSGVGLGLAISQEIMKNLGGSLICLESKIG-ANFQVK 882

Query: 788 IP 789
           IP
Sbjct: 883 IP 884


>gi|262403756|ref|ZP_06080314.1| sensor protein TorS [Vibrio sp. RC586]
 gi|262350260|gb|EEY99395.1| sensor protein TorS [Vibrio sp. RC586]
          Length = 967

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 120/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   SL S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQET---SLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +ND+LD + ++AG ++++ +   L  L+ E  + + ++  E  I+++   +DG    +  
Sbjct: 522 LNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGIKLRYQFADGVTQFWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I       G  I F V+++G  I ++   S+F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVCIQICQDPAGQGIRFEVQDSGIGIAQEEQASLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + +SS
Sbjct: 642 F-TQAEAGRRKQGGTGLGLAISRKLVQAMGGEMRLSS 677


>gi|254525181|ref|ZP_05137236.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
 gi|219722772|gb|EED41297.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
          Length = 661

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 551 AERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           A   L +   A R A E    +K+ F+  +S+ELR+PLT I+G+++LL    L  +++  
Sbjct: 254 AREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELL----LQRVDNTS 309

Query: 607 SQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKM 662
             Y  +  I+ S+     L++D+LDL+++  G ++L    + LN LL E    Q +  + 
Sbjct: 310 PLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLNLLLGEAIGAQELVAEG 369

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              ++ +++     L   + D  RL Q+   +LSNA+ F+     + L+   D   ++ +
Sbjct: 370 KALDVHLQLPEQPSL--VLGDATRLQQVLWNLLSNAIKFTPAEGRIDLQLQADGNHWVIT 427

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +    +F+RF        RR  G+GLGL+IV+  + LHGG V+ +S   G
Sbjct: 428 VHDTGDGIAPEFLHHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTAASEGHG 487

Query: 781 -VTTINCRIP 789
              T   R+P
Sbjct: 488 HGATFTVRLP 497


>gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 559

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 11/228 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K  F+  +S+E+R+P+  +IG  DLL  S+L     +Q +Y   I  S+  L+N++
Sbjct: 165 AAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL---QDEQREYATIIRNSADALVNII 221

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + +++G M+L      L   + EV    + +  + N+ +    + ++ S V  D
Sbjct: 222 NDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYYIEDQIPSMVFGD 281

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+   ++SNA+ F+++G   ++    KA  +     F+VK+ G  I       +F
Sbjct: 282 MGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIGISSKKLDRLF 341

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
             F        RR  G GLGL+I +S + + GG + + S + EG T +
Sbjct: 342 KPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFV 389


>gi|163853614|ref|YP_001641657.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665219|gb|ABY32586.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 792

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL+ +IG++++L         ++    +  I +S+  LL L+ND+L
Sbjct: 277 KSQFLANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVL 336

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG + L   T  +  L+ +V  +  + + +   R ++  +G LG+   D+ +L 
Sbjct: 337 DISKIEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLR 396

Query: 689 QIFSKILSNAMDFSSKGSTVI-LKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
           Q    ++ NA  FS  G  ++ ++  R+ G D++ FSV + G  + ++    +F RF   
Sbjct: 397 QSLINLIGNAAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQA 456

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                R+  G GLGL+I  +F+   GG + + S+     T   R+P
Sbjct: 457 DESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 502


>gi|118593594|ref|ZP_01550971.1| PAS domain protein [Stappia aggregata IAM 12614]
 gi|118433812|gb|EAV40472.1| PAS domain protein [Stappia aggregata IAM 12614]
          Length = 1563

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 101/182 (55%), Gaps = 2/182 (1%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
            AE  LT+       A   K+ F+  +S+E+R+PL  IIGF++++   + G + N +   Y
Sbjct: 1316 AEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGPIGNDRYKDY 1375

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++ I  S + +++L+ND+LDL+ ++AG + L +S +  ND++NE    +  + +   + I
Sbjct: 1376 LKDIRTSGSHIMSLINDLLDLSKIEAGKLDLKFSAVSTNDVINECVALMQPQANRERVII 1435

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728
            +      +   VAD + L QI   +LSNA+ ++  G  VIL  A   NG+    V++ G+
Sbjct: 1436 RASLPESVPDVVADPRSLRQIVLNLLSNAIKYNKSGGQVILSTALESNGEVALRVRDTGT 1495

Query: 729  SI 730
             +
Sbjct: 1496 GM 1497


>gi|110803461|ref|YP_698636.1| sensory box histidine kinase [Clostridium perfringens SM101]
 gi|110683962|gb|ABG87332.1| sensory box histidine kinase [Clostridium perfringens SM101]
          Length = 787

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487
           +++G T +++ + +     +G+I   N A   +    E  L    +        N+    
Sbjct: 400 RLRGVT-ENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 458

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546
           S+Y+NE         I+T   D+ +S +G ++L S S    S I   N    L +V V  
Sbjct: 459 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 504

Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603
             + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     LL TSK    N 
Sbjct: 505 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 564

Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L  ++  S+   +
Sbjct: 565 VNLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 624

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +    D       
Sbjct: 625 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSILIDETWVDIR 684

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IP  M + +F RF+ N     R   G G+GLS+V+S + LH G V +  S+E 
Sbjct: 685 VKDTGIGIPSHMKEFIFGRFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 744

Query: 781 VTTINCRIPS 790
            +  +  +P+
Sbjct: 745 GSEFSILLPN 754


>gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 1051

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 19/251 (7%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT     +VT   RAE  +     A   A   K+ F+ H+S+ELR+PL  I+G  +L   
Sbjct: 640 QTHCIMHDVTARRRAEEEIRRAQSAAEAASRAKSMFLAHMSHELRTPLNGILGMVEL--- 696

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + +   + KQ +Y+E    S   LL+++NDILDLA ++AG  +L      L +++    +
Sbjct: 697 AHMACADEKQCKYLELAKQSGHTLLDIINDILDLAKIEAGKAELKNEPFSLREVMESTIE 756

Query: 657 SIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714
            +A       + +    D ++   +A D+ RL Q+ + ++ NA+ F+ +GS +V L  +R
Sbjct: 757 PLAMLGRRKGLEVTWRMDPRIPDRLAGDQGRLRQVLANLVGNALKFTERGSVSVDLGLSR 816

Query: 715 DNGD----------FIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIV 761
              +           IFS+ + G  IP+D    +F  F   +++AH  +  G GLGL I 
Sbjct: 817 GGFETRPYCPAGMRLIFSIADTGIGIPQDKLPHLFESFTQALTSAHV-KFGGTGLGLCIS 875

Query: 762 ESFINLHGGHV 772
           +  + +  G +
Sbjct: 876 KRLVEMMQGTI 886


>gi|297539506|ref|YP_003675275.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297258853|gb|ADI30698.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 681

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A  +A+  K+ F+ ++S+ELR+PL  I+GF  LL+        + Q++ ++ I  +   L
Sbjct: 296 AAEQANLAKSDFLSNMSHELRTPLNAILGFAQLLEGGTPAPTET-QTKRLKEILKAGWYL 354

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +++N+ILDLA +++G   +    ++L +LL E +        E+ I++      ++ S 
Sbjct: 355 TDMINEILDLAKIESGQTPMLLEPVLLTNLLFECQSMFEPNALESGIKLLFSMVNRMWSV 414

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVF 739
            AD+ +L Q+ S +LSNA+ ++S+  TV +K +    G    SVK+NG+ +  +    +F
Sbjct: 415 RADQTKLKQVVSNLLSNAIKYNSEQGTVEVKCSESALGRIRISVKDNGAGLSAEKLAQLF 474

Query: 740 NRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F       G + G G+GL++ +  I + GG + + S+
Sbjct: 475 QPFNRLGQEVGVKEGTGIGLAVSKKLIEMMGGTIGVESA 513


>gi|240138280|ref|YP_002962752.1| hypothetical protein MexAM1_META1p1623 [Methylobacterium extorquens
            AM1]
 gi|240008249|gb|ACS39475.1| hypothetical protein MexAM1_META1p1623 [Methylobacterium extorquens
            AM1]
          Length = 1937

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 12/237 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ ++ 
Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I+A+ T LL+L+NDILDL+ +++G + L    + L D+   + ++      E ++   
Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFV 1349

Query: 671  VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721
            +  D  L  S   D +RL Q+   +LSNA  F+ KGS V LK     G            
Sbjct: 1350 IEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQWIAM 1408

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            SV + G  I ED  + +F  F        R+  G GLGL+I      L GG + + S
Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465


>gi|222095532|ref|YP_002529592.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221239590|gb|ACM12300.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 366

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 135/245 (55%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 120 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 178

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+++L+   ++   ++L+ S + +  L+ ++      ++ + N+  
Sbjct: 179 VSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSF 238

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 239 CMKGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQC 297

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S  +LH G +++ S+D+  T  
Sbjct: 298 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIADLHQGDITVRSNDKE-TVF 353

Query: 785 NCRIP 789
             ++P
Sbjct: 354 TVKLP 358


>gi|168022997|ref|XP_001764025.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162684764|gb|EDQ71164.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 725

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 43/281 (15%)

Query: 549 VRAERALTEKNE-----ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +R E A+ E  E     A+R ADE    KN F+  +S+E+R+PL  + G   +L T+   
Sbjct: 128 MREEMAVREATEKELRRAIRLADEAMEAKNRFLAVMSHEIRTPLNGVFGMAQVLATT--- 184

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q + V  +  S+ +LL +++DILDL+ V+AG MKL    +   D++  V ++   
Sbjct: 185 PLDPEQRELVSAMVFSADVLLAIISDILDLSKVEAGTMKLEERELNPRDIVKHVVRTAIA 244

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR---- 714
              +  I I+  I+D        D  R+ Q+ + ++ NA+ F+ KG   V L  A+    
Sbjct: 245 ASKDRGITIQADIADDVPSMVYGDPLRIKQVITNLVFNAVKFTRKGHVKVRLHIAKFPID 304

Query: 715 --------DNGD------------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752
                   D  D              F +++ G  IP++   ++F +F  V ++   +  
Sbjct: 305 ERETDVNLDVSDTKTSDQVSRDFWLKFEIEDTGIGIPKEALPTLFEKFTLVHSSTTRKYG 364

Query: 753 GVGLGLSIVESFINLHGGHVS-ISSSDEGVT---TINCRIP 789
           G GLGL+I +  + L  GH+S IS   +G T   TI C+ P
Sbjct: 365 GTGLGLAICKQLVELMDGHISVISKVGKGSTFTFTIRCKRP 405


>gi|30026138|gb|AAO47026.1| ethylene receptor [Arabidopsis thaliana]
 gi|30026140|gb|AAO47027.1| ethylene receptor [Arabidopsis thaliana]
 gi|30026148|gb|AAO47031.1| ethylene receptor [Arabidopsis thaliana]
          Length = 505

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
              DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383


>gi|254226158|ref|ZP_04919754.1| sensor histidine kinase FexB [Vibrio cholerae V51]
 gi|125621326|gb|EAZ49664.1| sensor histidine kinase FexB [Vibrio cholerae V51]
          Length = 785

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|238786285|ref|ZP_04630227.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
 gi|238712808|gb|EEQ04878.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
          Length = 911

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 13/233 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASS 617
           N+  ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+
Sbjct: 273 NKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSA 328

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + I++  
Sbjct: 329 NNLLCIINDVLDFSKLEAEKLILEHIPFSLRSTLDEVIILLAHTAHEKGLELTLHINNDV 388

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPE 732
               V D  RL QI + +L NA+ F+ +G+  IL  A+         +  +++ G  I E
Sbjct: 389 PEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVTAQVLTAQRVTLVVEIQDTGIGISE 448

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
                +F  F        RR  G GLGL I E  +   GG +S +S  D G T
Sbjct: 449 SQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGST 501


>gi|229528639|ref|ZP_04418029.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           12129(1)]
 gi|229332413|gb|EEN97899.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           12129(1)]
 gi|327484870|gb|AEA79277.1| Aerobic respiration control sensor protein arcB [Vibrio cholerae
           LMA3894-4]
          Length = 785

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|159045886|ref|YP_001534680.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
 gi|157913646|gb|ABV95079.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
          Length = 781

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 11/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T + + E+ L     A  +    K  F+  +S+E+R+PL  IIG +D++ +   G L+
Sbjct: 364 DITQAKQREQELAAAKTAAEEGARAKAQFLAMISHEIRTPLNGIIGMSDVMLS---GPLD 420

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    ++ I AS   LL ++NDILDL+ ++AG M+++     L   L      +    +
Sbjct: 421 PEHRGNLQTILASGEGLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVRPLAN 480

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----D 718
           E  + + V +S    G  + D  R+ Q+F  ++ NA+ F+  G+ V L+AA D G     
Sbjct: 481 EKGLSLSVDVSGLPEGRILGDPGRVRQVFLNLMGNAIKFTRAGA-VSLRAAVDTGAAPPR 539

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V++ G  IP D    +F+ F        R   G GLGL+I        GG ++++S
Sbjct: 540 VTLAVQDTGIGIPADRLDQIFDAFAQADSATTRDFGGTGLGLAISRQLTQQMGGDITVTS 599


>gi|30026142|gb|AAO47028.1| ethylene receptor [Arabidopsis thaliana]
          Length = 505

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
              DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383


>gi|30026136|gb|AAO47025.1| ethylene receptor [Arabidopsis thaliana]
          Length = 505

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
              DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383


>gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1450

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 123/244 (50%), Gaps = 13/244 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           F ++T     E  L    E   +A + K++F+ ++S+E+R+P+  IIG   L L+T    
Sbjct: 677 FEDITARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRTPMNAIIGMAHLALQTP--- 733

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+++Q  Y+E +  S+  LL ++NDILD + ++AG + +      L D+++ +   +  
Sbjct: 734 -LDARQRDYIEKVHRSAEALLGILNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGL 792

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG 717
           K  +  + +      ++  + + D  RL QI + + +NA+ F+  G  +++  +   +  
Sbjct: 793 KAEDKGLELMFDLPPEVPTALIGDALRLGQILTNLGNNAVKFTEPGGEILIGVRVEAEGA 852

Query: 718 DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D++   F V++ G  +  + C  +F  F        RR  G GLGL+I +    L GG +
Sbjct: 853 DWVCLGFEVRDTGIGMTPEQCGRLFESFSQADMSTTRRYGGTGLGLAICKYLTELMGGEI 912

Query: 773 SISS 776
            + S
Sbjct: 913 GVES 916


>gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
 gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
          Length = 876

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 5/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA   +     +A + K  F  ++S+ELR+PLT I    + +      +LN++Q   ++ 
Sbjct: 356 RATLMRRRIEEEAIKAKLQFFTNISHELRTPLTLIADPVNYIIHDD--NLNTQQRSMLQI 413

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +  +L  LV++ILD   V +G M+L  S   L + + +     +    + +I I + 
Sbjct: 414 VQRNVLVLTQLVSEILDFRKVQSGKMELRLSDFNLTENMKQWITLFSASAQKKHITISLD 473

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   +    AD  ++ +I   +LSNA+ ++++G  + LKA + +   I SV +NG  I  
Sbjct: 474 APDTI-MLRADHDKIERICYNLLSNALKYTAEGGKISLKAIKKDERVIISVTDNGCGIAS 532

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           D    +FNRF    + G  RG G+GL+IV++F  LH G VS +S     +T    IP K+
Sbjct: 533 DELPYIFNRFYQAKNAG--RGTGIGLAIVKAFTELHHGEVSATSKLGKGSTFTINIPVKQ 590


>gi|228966149|ref|ZP_04127211.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793518|gb|EEM41059.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 353

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 125 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 182

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 183 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 240

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 241 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 300

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 301 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELP 352


>gi|313123385|ref|YP_004033644.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279948|gb|ADQ60667.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 502

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L   NE ++  +E ++ F+Q V++E+R+PLT I G  + +K   +   +  +S  ++ 
Sbjct: 246 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 303

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  L+ LVN+ LD   + +G +++  S      ++N+V+Q +     +N  +I + 
Sbjct: 304 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNARTIMNDVQQQLTQNAAKNGDKIILD 363

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L  + AD+ R  Q+   +  NA+ F++ G T+ L+  R      FSV++ G  + +
Sbjct: 364 APEDLPVY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRLQHGATFSVQDTGIGMTQ 421

Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
           +  K +F RF     + A  G     GLGLSIV S +  HGG +  IS   EG T
Sbjct: 422 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIKVISKPHEGST 476


>gi|254445929|ref|ZP_05059405.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198260237|gb|EDY84545.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1263

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 9/251 (3%)

Query: 531  IPLPNAQTMLTFVNVTDSVRAERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNII 588
            I L N +     V + D V  ER    ++  LR  ++D++K+SF+ ++S+E+R+P+  I+
Sbjct: 858  IALQNKELQRGRVELEDRVH-ERTKELEHAKLRAEESDQLKSSFLMNMSHEIRTPMNAIL 916

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            GF++LLK   +      +++++E I ++   LL L++DILD++ + +G +KL      ++
Sbjct: 917  GFSELLKDKDID--EKDRNEFIEIIGSNGRSLLVLIDDILDISLIQSGRVKLRNEVFYID 974

Query: 649  DLLNEVKQSIATKMHE-NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            ++LNE+K     K     ++ ++ +   K     AD  R  Q+ + +L NA+ F+ KGS 
Sbjct: 975  EVLNELKDFYRLKTTSLVSVELEDVELFKGLKLNADSVRFRQVLNNLLGNALKFTEKGSI 1034

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
                  R NG+ +F V + G  I +   K VF+ F  + N       G G+GLSI    I
Sbjct: 1035 RFGCKPR-NGEALFHVVDTGLGIDKIEQKRVFDAFYKIENDSSKLFPGTGIGLSICRKLI 1093

Query: 766  NLHGGHVSISS 776
            +  GG + + S
Sbjct: 1094 SGMGGDIWVES 1104


>gi|70730557|ref|YP_260298.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344856|gb|AAY92462.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 945

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F +++   + E AL E       A+E K  F+  +S+E+R+PL  ++G  +LL  ++L 
Sbjct: 434 AFSDISARKQIEAALEEAKRLADTANEAKTLFLATMSHEIRTPLYGVLGTLELLSRTQL- 492

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +++Q  Y++ I  SS  LL L+ D+LD++ ++AG + L  S     DL++E+ Q  A 
Sbjct: 493 --DNQQKDYLQAIEGSSGTLLQLICDVLDVSKIEAGQLALELSEFSSLDLVHEIIQGYAA 550

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDN- 716
                 ++     D +L    + D  R+ QI S +L+NA+ F+  G  V  +   +RD  
Sbjct: 551 AAQAKGLQFYACVDPQLPEILLGDVTRIRQILSNLLNNAVKFTDTGRIVLRVRTESRDGE 610

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             + ++ V + G  I +D    +F  F  +  +     G GLGL I +    L  G++ +
Sbjct: 611 RSNILWQVSDTGRGIAQDDQTLIFEPFYQTEGNTNVIAGTGLGLPICQRLTQLMNGNIRM 670

Query: 775 SS 776
            S
Sbjct: 671 VS 672


>gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 478

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 24/232 (10%)

Query: 559 NEALRK---ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           NE +RK       +  F+ +VS++L++PLT I GF          ++    +Q  E +  
Sbjct: 228 NEMMRKVQAGQRAQRDFIANVSHDLKTPLTAIQGFAQ--------AILDGTAQSPETLRN 279

Query: 616 SSTILLN-------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++T++ N       LV D+L LA  DAG   L +  +   DLL E  +  +    +  + 
Sbjct: 280 AATVIYNEASRMYRLVLDLLTLARFDAGTADLVFEKVDPQDLLRETVRRFSPLAQKAGVI 339

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++ + D  L    AD +RL+Q  + ++ NA+ ++  G T++L+   + G  +  V++ G 
Sbjct: 340 LR-LEDASLPVLFADGERLMQALANLMDNALKYTPAGGTIVLRGKVEEGHLLLEVQDTGK 398

Query: 729 SI-PEDMCKSVFNRFV-SNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776
            I PE+  + +F RF   N  R Q   +  GLGL IV   +  HGG V + S
Sbjct: 399 GISPEEQTR-IFERFYRGNPSRSQDGEQSSGLGLPIVREILRAHGGEVRLYS 449


>gi|315125188|ref|YP_004067191.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013701|gb|ADT67039.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 1117

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 9/235 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +  E  L +  EA  +A   K+ F+  +S+E+R+P+  ++G  +++K ++L   + +Q  
Sbjct: 585 IETEAQLVKAKEAAEQAVIAKSEFLASMSHEIRTPMNGVLGMLNIVKATQL---DQQQKH 641

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++   +S+  LL ++NDILD + ++AG + +      L  LL EV +S A K  +NN  
Sbjct: 642 HIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPRLLGEVVESFALKAEQNNTT 701

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---SVK 724
           + + +     S F++D  RL QI S ++ NA+ F+  G  ++        D      ++ 
Sbjct: 702 LILDATHITSSEFISDPNRLRQILSNLIGNAVKFTQNGEILVTAKITHTLDATVLECAIA 761

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           ++G  I  +    +F+ F        R+  G GLGL+IV+    L  G V++SS+
Sbjct: 762 DSGIGISAEKQPHLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMSGEVNVSST 816


>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 684

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 23/240 (9%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+PL  +IG T +L+ +K   L++ Q   VE I  S   LL  +ND+L
Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTK---LDAHQQDLVETIRQSGETLLITINDVL 214

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D A +++G ++L +    L D L       A K  +  + +    D ++ S  V D  RL
Sbjct: 215 DFAKIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTRL 274

Query: 688 LQIFSKILSNAMDFSSKGSTVI--------LKAARDNGD--------FIFSVKNNGSSIP 731
            QI   +LSNA+ F+  G   +        +  +  N D         +FSVK+ G  IP
Sbjct: 275 RQILINLLSNAIKFTDVGEVSVSVKVEHCYVTNSTQNQDSHTSPTVCILFSVKDTGIGIP 334

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRI 788
           +D    +F RF  + ++   Q  G GLGL I +    + GG + + S+  EG T   C +
Sbjct: 335 KDRFNRLFQRFSQLDSSTTRQYGGTGLGLIISKQLSEMMGGEIWVDSTLGEGSTFSFCVV 394


>gi|254285971|ref|ZP_04960932.1| sensor histidine kinase FexB [Vibrio cholerae AM-19226]
 gi|150423881|gb|EDN15821.1| sensor histidine kinase FexB [Vibrio cholerae AM-19226]
          Length = 785

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|153803102|ref|ZP_01957688.1| sensor histidine kinase FexB [Vibrio cholerae MZO-3]
 gi|124121353|gb|EAY40096.1| sensor histidine kinase FexB [Vibrio cholerae MZO-3]
          Length = 785

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|194366814|ref|YP_002029424.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
 gi|194349618|gb|ACF52741.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
          Length = 1181

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 10/238 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K +   +A + K+ F+  + +E+R+P+T ++G ++LL  + L   +  Q  Y   I  + 
Sbjct: 803  KQQLAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPL---DPVQRSYAGSIQQAG 859

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--G 675
            + LL LVND LDLA ++AG ++L+     L  LL++V+  +     +  +  +   D  G
Sbjct: 860  SHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQALMQPMARQRQLAFQRGDDPPG 919

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDM 734
             + S   D  R+ QI   +L NA+ F+ +G   +     DNG    F V ++G  I  + 
Sbjct: 920  PI-SVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLDDNGAGLCFEVHDSGPGINAEQ 978

Query: 735  CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F+RF  +   R   R  G GLGL+I +      GG + + S          R+P
Sbjct: 979  QERLFHRFEQAEGPRTASRYGGSGLGLAICQELAVAMGGRIEVDSQPGKGARFQVRLP 1036


>gi|310768138|gb|ADP13088.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia sp. Ejp617]
          Length = 992

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 131/253 (51%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    
Sbjct: 484 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK--- 540

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +   
Sbjct: 541 ALPAGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLA 600

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    D  +  +   D  RL Q+ S +L+NA+ F+  G  ++   A   GD+
Sbjct: 601 MVVKKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGGIIL--QAYVKGDY 658

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + F V+++G  IP      +F+ F  V +  +   +G GLGL+I E  +N+  G + + S
Sbjct: 659 LAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQLHFQGTGLGLAICEKLMNMMDGDIEVES 718

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 719 EPGMGSQFIVRIP 731


>gi|307611018|emb|CBX00652.1| hypothetical protein LPW_23611 [Legionella pneumophila 130b]
          Length = 676

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 147/276 (53%), Gaps = 23/276 (8%)

Query: 529 SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           S +P+ N +  ++  V +T  V     LT+  EA   A++ K +F+ ++S+++R+PLT +
Sbjct: 243 SKVPITNLSGNIVGLVGITVDVTE---LTKAKEAAEAANQAKTAFIANMSHDIRTPLTGV 299

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG ++LL+ +     + +Q +    +  S   LLN++NDILD   V AG M      I  
Sbjct: 300 IGMSELLENT---VKDPEQKEEAHMLHDSGEELLNMLNDILD--DVHAGFMDKEDIRIET 354

Query: 648 NDLLNEVKQSIATKMHENNIRIK----VISDGK-LGSFV-ADRQRLLQIFSKILSNAMDF 701
            DL   ++  +  K+      +K    ++  GK +  ++ +DR+++ ++   +L NA+ F
Sbjct: 355 FDLYQCIEDLV--KLERPTTVMKHLELIVHIGKSVPRYIQSDRKKIHRVLLNLLGNAIKF 412

Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           + KG   I    L+ +  N    F V + G  IP  + + VF RF  +S +++G  +G G
Sbjct: 413 TPKGQITIQVACLEVSGKNIHLQFKVSDTGIGIPTSLQEKVFERFFRISPSYKGIYKGHG 472

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL I +S++NL GGH+++ S +   TT    IP +
Sbjct: 473 LGLHIAQSYVNLLGGHIALISEEGKGTTFYFDIPCQ 508


>gi|308069058|ref|YP_003870663.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858337|gb|ADM70125.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 853

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A  +K + + +A+  K+ F+ H+S+E+R+PL  IIG + LL  ++L ++   Q  Y+  
Sbjct: 205 KASEQKRKEMDEANRAKSIFLAHMSHEIRTPLNGIIGLSKLLNKTELTAV---QRDYLHK 261

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + ASS  L ++++++LD + ++AG ++L         LL  +  ++ T + +  I +  I
Sbjct: 262 LLASSRTLSSMLSNVLDFSKMEAGSLELEKVEFEPEKLLRHLADTVGTLLEDKEIEVVFI 321

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727
           +D  L  SF  D  R+ Q+ S +L+NA+ F+ +G  ++    L          F V++ G
Sbjct: 322 TDPALPKSFKGDPLRMEQVLSNLLTNAIKFTDQGHVLLQVKMLSQQEGRVGVSFMVEDTG 381

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I E     +F  F+  +    RR  G GLGL+I +      GG V + S
Sbjct: 382 IGISETCMDKLFVPFIQASTSTSRRYGGSGLGLAISKHLAEAMGGKVEVKS 432


>gi|237801381|ref|ZP_04589842.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806664|ref|ZP_04593368.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024240|gb|EGI04297.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027778|gb|EGI07833.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 1117

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 10/212 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  +IG + LL  +   +LN +Q Q +  +  +   LL ++NDILD+A
Sbjct: 642 FLANMSHEIRTPMNAVIGISHLLHNT---ALNDQQRQLLTKLQIAGRSLLGIINDILDIA 698

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690
            ++AG M+L  +      L +E+ +  + +  E  +R  V     L G  + D  R+ QI
Sbjct: 699 KIEAGEMRLENNPFSPRLLFDELSELFSPQAQEKGLRFSVSVVTPLPGLLIGDALRVNQI 758

Query: 691 FSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              ++ NA+ F++ G   V +    D  D      SV++ G  IP D+   +F+ F    
Sbjct: 759 LMNLVGNALKFTTVGGVDVTVSCESDTADTCWLRLSVQDTGCGIPADVLGQLFSPFTQAD 818

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGLS+V       GG V + S
Sbjct: 819 ASTTRRFGGTGLGLSVVRGLSEQMGGRVGVES 850


>gi|241664592|ref|YP_002982952.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240866619|gb|ACS64280.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 1436

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 14/251 (5%)

Query: 549  VRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            V  ER   +  EA + A E     K+ F+  +S+E+R+P+  ++G  +LL+ +KL     
Sbjct: 809  VTTEREQADALEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL---EG 865

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +Q Q V  +  S   LL++++DILD A ++AG + ++ +   L  + +     +A++ HE
Sbjct: 866  EQKQMVSLVQDSGRALLHILDDILDYAKIEAGRLDISPTATDLRAVFDGTVGLLASRAHE 925

Query: 665  NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDF 719
             ++ + V ++     S   D  RL QI   +LSNA+ F+  GS  +      AA D    
Sbjct: 926  KSLTVHVDVAADVPASVSVDSIRLRQILFNLLSNAIKFTDTGSVRLSAQCTYAADDTAHL 985

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
               V + G  I  ++  ++F  FV       RR  G GLGL+I      L GG + + S+
Sbjct: 986  AICVSDTGIGISAEVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGKLVMESA 1045

Query: 778  DEGVTTINCRI 788
                T +   +
Sbjct: 1046 QGQGTAVTLEL 1056


>gi|149276155|ref|ZP_01882299.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232675|gb|EDM38050.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 633

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 15/239 (6%)

Query: 551 AERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           AE+A  E  +A R+A+     K+ F+  +S+E+R+P+  ++G T LLK +    L+++Q+
Sbjct: 229 AEKARREAEKAKREAEHAAGAKSIFLATMSHEIRTPMNGVMGMTSLLKNT---PLSAEQA 285

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            YV  I+ SS  LL+++ND+LD + +++G M L   T  L   + +V    A K   + +
Sbjct: 286 DYVNVINTSSEALLSVINDVLDYSKIESGHMDLQERTFELKKCILDVIDLFAEKSLMSGV 345

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFS 722
            ++   D  L  + + D  RL Q+   +L+NA+ F++ G       +L+   +     F 
Sbjct: 346 ALRYELDPALPKYIITDDLRLRQVLINLLNNALKFTTVGHVFLKVGLLRTVENRITIGFE 405

Query: 723 VKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           V + G  IP++    +F  F    S +HR +  G GLGL I E  ++L  G + + S +
Sbjct: 406 VHDTGIGIPKNKISHLFKAFSQLDSTSHR-KFGGSGLGLIISEKLVSLMNGSIEVKSKE 463


>gi|319936817|ref|ZP_08011229.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319808085|gb|EFW04657.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 894

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 142/250 (56%), Gaps = 8/250 (3%)

Query: 548 SVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           ++  E+ + EK++A  + K ++++ + ++ +S++LR+PLT+I G   +L +S   +L+ K
Sbjct: 643 ALEKEQVIREKSKADLIAKNEQLRANLLRSISHDLRTPLTSISGSAGILLSSS-DTLDEK 701

Query: 606 -QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            + Q    I   S  L+NLV ++L +  ++ G M+LN +T ++ ++++E  Q I+ +  E
Sbjct: 702 NKKQLYTDIYDDSLWLINLVENLLSVTRIEDGTMQLNMTTELIEEVVHEALQHISRQGRE 761

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           ++I+++   D +      D + ++Q+   ++ NA+ ++ KGS +++   +   +    V+
Sbjct: 762 HHIQVQ--QDNEFILVKMDTRLMIQVIINLIDNAIKYTPKGSHILIHVFKQKQEVCIDVQ 819

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I ++M   +F+ F +   +    RR +GLGL++ +S +N H G +S+  +     
Sbjct: 820 DDGPGITDEMKPHIFDMFYTGNMKVADSRRSLGLGLALCKSIVNAHHGTMSVLDNQPKGA 879

Query: 783 TINCRIPSKE 792
            +   +P +E
Sbjct: 880 ILRVILPVEE 889


>gi|166030485|ref|ZP_02233314.1| hypothetical protein DORFOR_00146 [Dorea formicigenerans ATCC
           27755]
 gi|166029737|gb|EDR48494.1| hypothetical protein DORFOR_00146 [Dorea formicigenerans ATCC
           27755]
          Length = 899

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 145/271 (53%), Gaps = 8/271 (2%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPL 584
           E  + P  N+  +        ++  E+   EK EA  L K ++++ + ++ +S++LR+PL
Sbjct: 627 EIPLDPFENSILLSILGECALALENEKNAREKQEAAILAKNEQLRANLLRAISHDLRTPL 686

Query: 585 TNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           T+I G  ++LL        ++K+  Y++ I   S  L+NLV ++L +  ++ G + L   
Sbjct: 687 TSISGNASNLLSNGDSFDNDTKKQLYMD-IYDDSMWLINLVENLLAVTRIEEGRLNLRIM 745

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +++D++ E    I  K  E++I ++   +  L     D + ++Q+   I+ NA+ ++ 
Sbjct: 746 EDLMDDVITEALHHINRKSEEHHISVESKEEFLLAKM--DAKLIVQVIINIVDNAIKYTP 803

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           K S ++++  +     I S+ ++G+ I +++   +F+ F S A++    RR +GLGLS+ 
Sbjct: 804 KNSHIVIRTEKRGKQAIVSISDDGNGIADEIKPRIFDMFYSGANQIADSRRSLGLGLSLC 863

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +S IN HGG +++S +    T     +P+ E
Sbjct: 864 KSIINAHGGELTVSDNLPHGTVFTFTLPAGE 894


>gi|148378339|ref|YP_001252880.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
 gi|148287823|emb|CAL81889.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 615

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 2/230 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++   F+ ++S+EL++PL  I     LL   +      KQ +Y++ I  +   L+ 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLDFYEKDVDYEKQDKYLKLIKQNCYRLMK 415

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD   +D+G ++LN     +  L+ E+  S+ +      I I   ++ +      
Sbjct: 416 LINNLLDTTKLDSGYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTEMEERVIAV 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  ++ +I   +LSNA+ F++ G  + +       +    +K+ G  IP D  +S+F RF
Sbjct: 476 DTDKIERIILNLLSNAIKFTNPGGNIFVNIKDSEENVYVHIKDTGVGIPSDKLESIFERF 535

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +    +  + G G+GL +V+SF+ +H G V+I+S     T    ++P+
Sbjct: 536 FQIDKTLKKNKEGTGIGLHLVKSFVEMHNGKVTINSELGKGTEFIIKLPA 585


>gi|295703661|ref|YP_003596736.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294801320|gb|ADF38386.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 917

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 16/256 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L EK   L    + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +Y 
Sbjct: 487 AKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEMLEENAAKTLSEDEEEYA 546

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V++G + +  + + +++L ++++++ +    +  +++K
Sbjct: 547 RIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPDQIERNFSHVAEQKKVQLK 606

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGD-- 718
           +     +   +  D +R  QI   +LSNA  F+  GS  +         L  A    D  
Sbjct: 607 INKAQDVPDIIHTDEKRFQQIVKNLLSNAFKFTESGSVTVSIQRVADHRLTTAMRTIDTD 666

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                +V + G  IP++  + +F  F        R+  G GLGLSI   F  L GG +S+
Sbjct: 667 CWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTGLGLSICSEFAKLLGGWISL 726

Query: 775 SSSDEGVTTINCRIPS 790
           SS     +T    +PS
Sbjct: 727 SSEVGKGSTFTLYLPS 742


>gi|290476633|ref|YP_003469538.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004]
 gi|289175971|emb|CBJ82774.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004]
          Length = 791

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 19/238 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYI 613
           LT   +  ++A +IK  F+ ++S+ELR+PL  +IGFT  +LKT     + S+Q++Y+  I
Sbjct: 286 LTLAKKRAQEAVKIKTEFLANMSHELRTPLNGVIGFTRQMLKTP----ITSQQAEYLYVI 341

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++NDILD + +++  + L+    +L D +NEV + +     E N+ ++   
Sbjct: 342 ERSANNLLKIINDILDFSRLESNKLVLDQVPFLLRDTVNEVIELLTPVASEKNLPLQHRI 401

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGS 728
           D KL +  + D  RL QI + ++ NA+ F+ KGS ++    R     +    F++ + G 
Sbjct: 402 DDKLPNLMIGDPIRLQQILTNLIGNAIKFTDKGSVILEVRLRQQQHHLVQIDFTITDTGI 461

Query: 729 SIPEDMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEG 780
            I  +    +F  F         H G   G GLGLSI +  +N   G +  IS   +G
Sbjct: 462 GIKPEYRPILFQAFNQADASITRHYG---GTGLGLSITKRLVNEMKGEIDFISEPAKG 516


>gi|268318211|ref|YP_003291930.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262335745|gb|ACY49542.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 352

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 125/242 (51%), Gaps = 3/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R L ++ E L++ +  +  F+ +VS+EL++P+ +I GFT+ L  +  G   ++++ +
Sbjct: 105 RTGRTLEKEIEELKRMENYRREFLGNVSHELKTPIFSIRGFTETLLEADPGDEATRRA-F 163

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  ++  L NLV D+ +++ ++ G ++L      L  L+ EV +S+        + +
Sbjct: 164 LEKILRNADRLANLVRDLTEISRLETGELQLQPVPFELPALVREVLESMEPLAATRQVSL 223

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +      L   + DR+RL Q+   ++ NA+ +++ G  V ++    +G    +V +NG  
Sbjct: 224 RCCVPENLPHVLGDRERLRQVLINLVDNAIKYNNPGGFVEVRLQEQDGSVRVAVVDNGIG 283

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I       +  RF  V  +   ++ G GLGL+IV+  +N H   + I S+    +T   R
Sbjct: 284 IAPQHIPRLTERFYRVDRSRSREQGGTGLGLAIVKHILNAHQTRLEIESTPGKGSTFAFR 343

Query: 788 IP 789
           +P
Sbjct: 344 LP 345


>gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
 gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
          Length = 580

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           ++ ++++  FV +VS+EL++P+T+I GF++ L     G+++ K++  +++  I   S  L
Sbjct: 351 KQLEQMRKDFVANVSHELKTPITSIKGFSETLLD---GAIDDKEALTEFLSIILKESVRL 407

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+LDL+ ++    KLN       +++ E++  +  K  E  I++ V    +    
Sbjct: 408 ETLIQDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKATEKGIQLHVRVPKEPVYV 467

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +AD  RL QIF  +++NA+ ++ +G +V + A    G + F V + G  + +     +F 
Sbjct: 468 MADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDVADTGIGMKKSEIPRIFE 527

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF        R   G GLGL+IV+  +  H G +S+ S     TT    + S
Sbjct: 528 RFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSLKS 579


>gi|206974651|ref|ZP_03235567.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|206747294|gb|EDZ58685.1| sensor histidine kinase [Bacillus cereus H3081.97]
          Length = 458

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|166713559|ref|ZP_02244766.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 20/244 (8%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYI 613
           + +NEA   A  +K+ F+  +S+ELR+PLT I+G+++LL    L  +      Y  +  I
Sbjct: 257 SARNEAESMA-RLKDEFLATLSHELRTPLTTILGWSELL----LQRVEEGHPTYKGLSVI 311

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-----QSIATKMHENNIR 668
           ++S+     L++D+LDL+++  G ++L   ++   DL+ +V+     Q +A +  +  + 
Sbjct: 312 ASSARAQKRLISDMLDLSSMLLGKVQLEVESL---DLVEQVREALNTQELAAEGKDQILE 368

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V     L   + D  RL Q+   +LSNA+ F+     + +   RD+G  + SV ++G 
Sbjct: 369 LHVPPTPCL--VLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGD 426

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
            I  +    +F RF         Q  G+GLGL+IV+  + +HGG V  +S   G   T  
Sbjct: 427 GIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFT 486

Query: 786 CRIP 789
            R+P
Sbjct: 487 VRLP 490


>gi|163803362|ref|ZP_02197238.1| sensor histidine kinase FexB [Vibrio sp. AND4]
 gi|159172824|gb|EDP57666.1| sensor histidine kinase FexB [Vibrio sp. AND4]
          Length = 788

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+   L  +Q +Y
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTQEQRKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPTPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    DF   I  V++
Sbjct: 381 DLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADLEDDFATIIMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IP++    +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 500 STFTVSIHVP 509


>gi|37676593|ref|NP_936989.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37201136|dbj|BAC96959.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 1381

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 25/254 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  + EK + L  A + K+ F+ ++S+ELR+PL +I+  + L   +K G+L +KQ + 
Sbjct: 661 QAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQIES 720

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHEN 665
            + I++S + LL+L+N+ILDL+ V+AG + L+   + L     DLL  + Q IA    + 
Sbjct: 721 AKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLR-LYQDIA---DDK 776

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV------------ILKA 712
            +  +VI    L  +   D QRL QI   +L+NA  F+ +G+              +L  
Sbjct: 777 GLDFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDK 836

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            R+     FSVK++G  I ++   ++F  F        R+  G GLGLSI +   +L GG
Sbjct: 837 PRE-ALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGG 895

Query: 771 HVSISSSDEGVTTI 784
            + +  S+EG  +I
Sbjct: 896 RIHL-KSEEGKGSI 908


>gi|150025735|ref|YP_001296561.1| two-component system sensor histidine kinase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772276|emb|CAL43754.1| Probable two-component system sensor histidine kinase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 576

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 117/217 (53%), Gaps = 5/217 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P+++I     LL+  + G LN +Q   VE I   S  LL
Sbjct: 346 FKELDFAKTNFIATISHELKTPISSIKFSLQLLEKEQTGILNEEQKYLVESIQDDSQRLL 405

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +  ++L+L+ V+ G ++LN       D++    +++  +  +  I + V +D KL +  
Sbjct: 406 KITGELLELSQVETGNIQLNIEKSNPYDIVYYATEAVKIQAEQKQIELVVEADEKLPNIK 465

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD+++   +    L+NA+ +SS+ S +I+K  ++N   IF V + G  I       VF++
Sbjct: 466 ADKEKTAWVLINFLTNAIKYSSENSKIIVKLKQENNHIIFQVIDTGKGIDNRYKSKVFDK 525

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  +  +H   + G GLGL+I + FI    G +S+ S
Sbjct: 526 YFQIPGSH---KLGTGLGLAISKEFIEAQNGTISVES 559


>gi|297580999|ref|ZP_06942924.1| sensor histidine kinase FexB [Vibrio cholerae RC385]
 gi|297534825|gb|EFH73661.1| sensor histidine kinase FexB [Vibrio cholerae RC385]
          Length = 785

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+S+Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSSEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              ++  R+P
Sbjct: 500 STFSVTIRVP 509


>gi|330895938|gb|EGH28222.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 993

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 130/258 (50%), Gaps = 14/258 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+  + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 690 WIDITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQAL-R 748

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L    SQ ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L + V +  + +
Sbjct: 749 LGKIPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQ 808

Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718
             E  + +++   G+  G +  D  RL Q+   +L NA+ F+ +G+ V+ L    D+ + 
Sbjct: 809 AGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPES 868

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                 ++++G  I     + VF  F      + AH G   G GLGLSI    + L  G 
Sbjct: 869 TRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYG---GSGLGLSITRQLVELMKGD 925

Query: 772 VSISSSDEGVTTINCRIP 789
           +S+ S     T +   +P
Sbjct: 926 ISLHSEPGKGTLVTIDLP 943


>gi|238910122|ref|ZP_04653959.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 778

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|228928290|ref|ZP_04091331.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228831337|gb|EEM76933.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 448

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMNV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|254302065|ref|ZP_04969423.1| sensor histidine kinase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322257|gb|EDK87507.1| sensor histidine kinase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 623

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 6/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L+   E    A++ KN F+  +S+E+R+PLT IIG++ +L   ++   +SK+   +E 
Sbjct: 144 RELSISKEIAESANKAKNEFLAKISHEMRTPLTPIIGYSRIL-AKEINDPSSKEK--LEI 200

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LLN  N++LD + +++G + LNY T  +  L  ++           NI  K+ 
Sbjct: 201 IHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRTLFQDIYHEHIDLAKSKNINFKID 260

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                 S  +D+ ++ +I   I+ NA+ ++ KG  V+     +N    F+V ++G  I E
Sbjct: 261 YLHANVSIYSDKIKIYEIAKNIIHNALKYTEKG-FVLCDVFVENNTLFFNVYDSGIGISE 319

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  K++F  FV      ++ G GLGLSI +  + +  G + + S     +T   +IP
Sbjct: 320 ENIKNIFESFVQIG--SEQSGAGLGLSITKKLLEVLNGKIEVESKVGIGSTFKIQIP 374


>gi|189423633|ref|YP_001950810.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419892|gb|ACD94290.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 743

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT   +A   A+  K+ F+ ++S+ELR+P+  +IG   LL+ ++L   N++Q++Y+  I 
Sbjct: 352 LTAARDAAESANRTKSEFLANMSHELRTPMNGVIGTAQLLRMTEL---NAEQAEYLASIE 408

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L+ L+NDILDL+ ++AG ++L      L +++  V  S++ +     +++ V  D
Sbjct: 409 HSADSLMALLNDILDLSRIEAGRLELENRPFGLQEVIGNVVDSLSAQARLKWLQLSVEFD 468

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
             L   V  D  R  QI   +  NA+ F+ +G+ V++ AA  + D         V++ G 
Sbjct: 469 RNLPQLVLGDSLRFRQILLNLTGNAIKFTDQGA-VLVTAALSSADEDSVTLHLCVQDTGI 527

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +  + +F  F        R+  G GLGL+I      L GG +   S     TT + 
Sbjct: 528 GITAEAMQRIFAPFTQADSSNTRKYGGSGLGLTISRHLTGLMGGRLWAESEPGIGTTFHL 587

Query: 787 RIP 789
            +P
Sbjct: 588 ELP 590


>gi|30026134|gb|AAO47024.1| ethylene receptor [Arabidopsis thaliana]
 gi|30026144|gb|AAO47029.1| ethylene receptor [Arabidopsis thaliana]
          Length = 505

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
              DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383


>gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
 gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4]
          Length = 1268

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 127/243 (52%), Gaps = 16/243 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  ++ E  L +  E    A++ K+ F+ ++S+E+R+P+  ++G   L+  S   +L+
Sbjct: 512 DLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANS---TLD 568

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y+E   +++  LL L+NDILD + ++AG ++L+     L DL+ ++    ++   
Sbjct: 569 QRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLVFSSSAE 628

Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
           +  + +   V +D      + D  R+ Q+   ++ NA+ F+ KG   IL + R       
Sbjct: 629 QKGLEVLYDVTADVP-EHLLGDSFRIKQVLINLVGNAIKFTDKGE--ILISIRSQSLPEG 685

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +  FS+K+ G  I  +   ++F+ F        RR  G GLGL+I +  +NL GG + 
Sbjct: 686 EINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIG 745

Query: 774 ISS 776
           + S
Sbjct: 746 VES 748


>gi|115358543|ref|YP_775681.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115283831|gb|ABI89347.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 664

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 9/244 (3%)

Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R L    +A  +ADE   +K+  +  VS+ELR+PL  I G+ ++L++   G       Q 
Sbjct: 267 RMLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRS---GEGQGFAHQA 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L  +V D+LD +++  G ++L  + + L  ++ E  + I      N + +
Sbjct: 324 IDAIDRSARSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQEAVREIGDTAQANGLEL 383

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                       AD +RL Q+ S +LSNA+ F+  G  + +           SV + G  
Sbjct: 384 STECAMPSCVIAADAERLRQLLSNLLSNAIKFTPPGGRIKVSLNPAGARVRLSVADTGQG 443

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
           I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V+ +S   G  TT+  
Sbjct: 444 ISAERLPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTV 503

Query: 787 RIPS 790
            +P+
Sbjct: 504 MLPA 507


>gi|224282830|ref|ZP_03646152.1| sensor protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 368

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   E  E L+ AD+++   V +VS+ELR+P++ +    + +    +          +E 
Sbjct: 115 RTFNEMAEELQHADQMRRDVVANVSHELRTPVSALQAMVENMADGVV----EPTPANLEG 170

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN     L+D L+E  +   IA   H ++I + 
Sbjct: 171 ILGQTHRLSDLIAFLLDLSRMEAGAASLNIERFCLHDFLDETIEPLEIADAGHAHDIMLH 230

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728
           V SD  +     D+ RL Q+F+ I++NA+  S+ G++V+++A    D G  + +V N GS
Sbjct: 231 VDSDIWME---GDQDRLRQLFTNIIANALKHSADGTSVLIEARENADTGTIVTNVVNFGS 287

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            IP +    +F RFV   +    +  G G+GLSI      LHGG V +     G
Sbjct: 288 QIPVEERSDIFRRFVKGRSGPGTESGGTGIGLSIARWAAQLHGGTVRVVDDPRG 341


>gi|326332294|ref|ZP_08198574.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium
            Broad-1]
 gi|325950000|gb|EGD42060.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium
            Broad-1]
          Length = 1786

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 15/241 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A R L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+LN++Q +Y 
Sbjct: 1229 ARRGLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLILARLLSDNVDGNLNARQVEYS 1288

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  + T LL L+NDILDL+ V+AG M ++ + + +  ++  V+ +      E ++   
Sbjct: 1289 RTIHGAGTDLLQLINDILDLSKVEAGKMDVHVTDVDVTSVVEYVEATFRPLTAEKDLDFI 1348

Query: 671  VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------------KAARDNG 717
            V  D  +   + +D+ RL Q+   +LSNA+ F+  G   +L               + + 
Sbjct: 1349 VSVDPDVPRLLRSDQHRLQQVLRNLLSNAVKFTDSGGVRLLIRNASGERFSTRSLQQADA 1408

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               FSV + G  IP +  K +F  F        R+  G GLGLSI     +L GG + + 
Sbjct: 1409 VLAFSVIDTGIGIPPEKLKVIFEAFQQADGTISRKFGGTGLGLSISREVAHLIGGEIQVK 1468

Query: 776  S 776
            S
Sbjct: 1469 S 1469


>gi|320324525|gb|EFW80602.1| ATPase-like histidine kinase [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 973

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +G  +S+     +
Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 579

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A     + +F V ++G 
Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 698

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 757

Query: 789 PSKE 792
           P  E
Sbjct: 758 PMHE 761


>gi|298242541|ref|ZP_06966348.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555595|gb|EFH89459.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 593

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 123/251 (49%), Gaps = 23/251 (9%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------------TSKLGSLNSKQS 607
           ++++ + +K+ FV  VS+ELR+PLT I G+T  L                +L  L + + 
Sbjct: 333 SMKQVERLKDEFVSVVSHELRTPLTAIKGYTQHLVRRVERRLRKLRGTPPQLNPLPTPEP 392

Query: 608 ------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 + +  I + +  L  LVND+LDL+ +  G ++L Y    L DLLNE   +I   
Sbjct: 393 PESYDLRSLNIIQSQTEHLERLVNDLLDLSQLQWGQLQLQYEEFYLTDLLNEYVHTIQNS 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             ++ + + + +  +    +ADR+R+ Q+   IL NA+ +S  G  V ++  R  G+F+ 
Sbjct: 453 AEQHTLYLDIQT--RDTRIIADRKRIGQVIGNILDNAIKYSPNGGKVTVRLQRQQGEFLV 510

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           S+ + G  +  +    +F RF  V N    Q  G+GLGL +    I  HGG +  +++  
Sbjct: 511 SIIDEGIGVSLEHYDHIFERFYRVHNTSTQQYSGIGLGLFVTREIITRHGGRIWFTNNQH 570

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 571 IGTTFYFTLPP 581


>gi|268324757|emb|CBH38345.1| conserved hypothetical protein, histidine kinase family and
           response regulator receiver family [uncultured archaeon]
          Length = 406

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 129/262 (49%), Gaps = 19/262 (7%)

Query: 546 TDSVRAERALTEKNEALRKADE----------IKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            D  R  + L  KN  L+KA E          +K+ F+   S+ELR+PLT +     ++ 
Sbjct: 134 ADRERVLKELESKNVELQKAMEHMADLEEITRMKSEFLSITSHELRTPLTPMKAQLQMIL 193

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +G LN  Q + +E +  + T L  L++DILDL+ ++AG +KL +  + +N ++ E  
Sbjct: 194 EGYVGELNDNQKKSLEVVLRNITKLGKLIDDILDLSRIEAGRIKLAFKPVNINSIVKEAI 253

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA- 713
            +  +     +I I   ++D  L   V D +R+ Q+   +L+NA+ FS K   VI++   
Sbjct: 254 ITQESSATSKDIEISTKLAD--LPDIVGDPERIGQVIGNLLNNAIKFSKKSGKVIIETKC 311

Query: 714 ---RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
                  + +FS+ + G  I +   K +F  F  +  +   ++ G GLGL+IV   I+ H
Sbjct: 312 LDIEGKENVLFSITDYGIGISKADHKKLFKPFSQIDTSLGREQAGTGLGLAIVRGIIHAH 371

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
            G V I S     TT    IP+
Sbjct: 372 RGKVWIDSESGNGTTFYFTIPT 393


>gi|260892898|ref|YP_003238995.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
 gi|260865039|gb|ACX52145.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
          Length = 418

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 4/207 (1%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT I GF + L+   L    + Q ++++ I++ +  L++LV D+L L+
Sbjct: 197 FVANVSHELRTPLTAIKGFVEALEDGALEDRETAQ-EFLQIIASETERLIHLVEDLLKLS 255

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++     L    + LN+L++ +      +  E  +  +V     L   + D + L Q+F
Sbjct: 256 RLENRQTFLRRQEVNLNELIHNIALVWRRRAEEKGLAFEVDLPPGLPLVLGDPELLTQVF 315

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749
             ++ NA+ ++  G  V ++    +G     V++ G  IP+D    VF RF  V  A   
Sbjct: 316 VNLIDNALKYTPVGR-VRIRGEYQSGWVRIEVEDTGIGIPQDCLPRVFERFFRVDRARSR 374

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776
              G GLGLSIV+  + LHGG V + S
Sbjct: 375 ASGGTGLGLSIVKHIVELHGGKVGVES 401


>gi|52142294|ref|YP_084535.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51975763|gb|AAU17313.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 458

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6]
 gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1306

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 10/216 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  +IG T LL  + L   N++Q  +VE I  S   LL ++NDIL
Sbjct: 660 KSDFLATMSHEIRTPMNAVIGMTGLLLDTPL---NAEQRDFVETIRNSGDALLTIINDIL 716

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687
           D + +++G  +L      L D L      ++ +  E  I +  +I+     +   D  R+
Sbjct: 717 DFSKIESGKFELEQQPFDLRDCLEAALDLVSARAAEKQIDLAYMIARNVPQAIEGDVTRV 776

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSSIPEDMCKSVFNRF- 742
            QI   +L+NA+ F+  G  V++   R   D +F    +V++ G  IP D    +F  F 
Sbjct: 777 RQILVNLLANAVKFTPAGEVVVMIEGRRIRDQLFEVHIAVRDTGIGIPADRLNRLFKAFS 836

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            V  +   Q  G GLGL+I +    L GG + + S+
Sbjct: 837 QVDASTTRQYGGTGLGLAISQRLCALMGGRMWVEST 872


>gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 823

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 9/217 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNL 623
           A+  K+ F+  +S+E+R+P+  ++G T+LL    LG+ L  +QS+YVE +  S   LL++
Sbjct: 180 ANRAKSDFLAQMSHEIRTPMYGVLGMTELL----LGTDLTKEQSRYVETVRRSGEALLSI 235

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +N+ILD + ++AG M+L      L  L ++     A       + + + +  G    F+ 
Sbjct: 236 INNILDFSKIEAGRMELETIPFDLRQLASDAAAIFAEDAARKGLELSLELERGLPRMFLG 295

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  RL Q+   +L NA+ F+ KG   + LK A +      SV++ G  I  +    +FN+
Sbjct: 296 DPGRLRQVMVNLLGNAVKFTLKGGVRLTLKLAEEPALVRISVEDTGIGIAPEARLRIFNQ 355

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F        R+  G GLGL+I      L GG + + S
Sbjct: 356 FAQGDESMTRKYGGTGLGLAIARQLTELMGGVLDVES 392


>gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1339

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 759  QARQELEARAQQLSLASTYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTPKQVEY 818

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M +N   + L  LL+ V  +      + ++  
Sbjct: 819  AGIIHSAGSDLLQLINDILDLSKVEAGKMDINPERVHLPQLLDYVDATFRPMTTQKSLDF 878

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----------STVILKAARDNGD 718
             V  +       + D  RL QI   +LSNA+ F+ +G           + I    R  G 
Sbjct: 879  TVTTAPDAPADLLTDDSRLRQILRNLLSNAVKFTERGGVELRIEPAAGSEIPAGLRRRGA 938

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + F V++ G  IPE   +SVF  F        R+  G GLGLSI      L GG V+  
Sbjct: 939  IVAFRVRDTGIGIPEQQLESVFGAFQQADGTTSRKYGGTGLGLSISREIAQLLGGAVTAE 998

Query: 776  SSDEGVTTINCRIP 789
            S+    +T    +P
Sbjct: 999  STPGQGSTFTLYLP 1012


>gi|188533372|ref|YP_001907169.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia tasmaniensis Et1/99]
 gi|188028414|emb|CAO96275.1| Sensor kinase protein (Capsular synthesis regulator component C)
           [Erwinia tasmaniensis Et1/99]
          Length = 951

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 131/252 (51%), Gaps = 9/252 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  V+ E++L E  +   +A E K+ F+  VS+ELR+PL  IIG  DLLKT    +
Sbjct: 445 LVDVSARVKMEQSLHEIAKEAEQASESKSMFLATVSHELRTPLYGIIGNLDLLKTK---A 501

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +    
Sbjct: 502 LPAGAESLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAM 561

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    +  GD++
Sbjct: 562 VVKKRLTLWCFINSDVPVLMEGDPMRLQQVISNLLNNAIKFTHTGGIILQVYVK--GDYL 619

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V+++G  I       +F+ FV      QR  +G GLGL+I E  +N+  G + + S 
Sbjct: 620 TFCVRDSGVGISAKELTRLFDPFVQVGSGVQRNFQGTGLGLAICEKLMNMMDGDIEVDSE 679

Query: 778 DEGVTTINCRIP 789
            +  +    RIP
Sbjct: 680 PDMGSQFVVRIP 691


>gi|182412958|ref|YP_001818024.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177840172|gb|ACB74424.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1896

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 18/261 (6%)

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            T+  +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L +K
Sbjct: 1206 TEVEQARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLAENATGNLTTK 1265

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q  +   I +S T LLNL+ DILDL+ +++G + +    I  + L + ++++        
Sbjct: 1266 QIDFARNIHSSGTDLLNLITDILDLSKIESGTVTVEAEEISFSSLRDAIERNFRHIAEAK 1325

Query: 666  NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKA------- 712
            N+ ++V     L  +   D +RL QI   +LSNA  F+++G   +     L         
Sbjct: 1326 NVPLEVDFASTLPRAITTDPKRLQQILKNLLSNAFKFTAQGKVAVRVFPALSGWVQGHPV 1385

Query: 713  -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768
             +R      F++++ G  I  +  K +F  F   A  G  R   G GLGLSI      L 
Sbjct: 1386 LSRATHVIAFAIQDTGIGIAPEKQKLIFEAF-QQADAGTSRKYGGTGLGLSISRELATLL 1444

Query: 769  GGHVSISSSDEGVTTINCRIP 789
            GG + ++S+    +T    +P
Sbjct: 1445 GGEIRLNSTPREGSTFTLYLP 1465


>gi|159897123|ref|YP_001543370.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890162|gb|ABX03242.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 880

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 131/261 (50%), Gaps = 35/261 (13%)

Query: 541 TFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +F N+ D V A+R   L E  +  + AD +K+ F+  +S+ELR+PL  IIGF+ +L    
Sbjct: 603 SFQNLEDLV-AQRTGELREALDRAQAADRLKSQFLASISHELRTPLNAIIGFSTVLLDEL 661

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY-STIVLNDLLNEVKQS 657
              L  +Q + +E I+ +   LL+L+NDILD+A ++AG   L+  +T VL      V QS
Sbjct: 662 SPLLVEEQREDLETINKNGRYLLDLINDILDMARIEAGKFALHREATAVL-----PVVQS 716

Query: 658 IATKMHENN-----IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
               MH  N     +RI +  D  L     D  RL QI   ++SNA+ F+ +G  V+ +A
Sbjct: 717 AVDIMHGLNSKPVTMRIDIAPD--LPRMDVDPTRLRQIVINLISNAVKFTDRGQIVV-RA 773

Query: 713 ARD--------------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
            R                GD+I  SV++ G  +  +    +F  F    H G R   G G
Sbjct: 774 IRRVVQEATPIGSHYLLPGDWIVISVQDTGIGMDAEALGKLFQEF-QQVHAGARGILGSG 832

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGLSI    ++LH G + + S
Sbjct: 833 LGLSITRRLVDLHDGDLWVDS 853


>gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1932

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 128/256 (50%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A R+L EK E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y
Sbjct: 1234 QARRSLEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTDNVDSNLTAKQVEY 1293

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I ++   LL L+NDILDLA +++G M ++ + I L++L  ++++          +  
Sbjct: 1294 SQTIYSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIERGFGQIAQNKGLTF 1353

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--------- 718
             V    +L + V  D +RL Q+   +LSNA  F+ +G   + ++ A+   +         
Sbjct: 1354 AVELAPELPTTVNTDIKRLQQVLKNLLSNAFKFTERGEVRLRIEVAKPGWNPNQQPLNPA 1413

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F+V + G  I  D  K +F  F        R+  G GLGLSI     +L GG + 
Sbjct: 1414 QNVIAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGLSISREIAHLLGGEIK 1473

Query: 774  ISSSDEGVTTINCRIP 789
            ++S     +T    +P
Sbjct: 1474 LTSHPGQGSTFTFYLP 1489


>gi|323467274|gb|ADX70961.1| Sensor protein [Lactobacillus helveticus H10]
 gi|323467317|gb|ADX71004.1| Sensor protein [Lactobacillus helveticus H10]
          Length = 382

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 8/230 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++ K+  + +VS+++R+PLT+IIG+  LLK+         Q +YV+     +  + +
Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKSGVASP--EDQQKYVDIAYTKAEQMKS 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ +  T+ +   KLN +++ +  +L +V      +  +  I IK+ +  K  +  A
Sbjct: 206 LANDLFEYTTLKS--TKLNLTSLHIYSMLEQVAAGFELEAEKKGIEIKIEARPKDLTIRA 263

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++++ ++SNA  +    + + L A   N   +   V+NNG  IP+   K +F+R
Sbjct: 264 DAEKLVRVYNNLISNAFKYGIGATQIKLVANLVNKREVELRVENNGEPIPKKSLKKIFDR 323

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGLSI +  ++LH G +    SD+  T+   R+P
Sbjct: 324 FYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIR-CESDKNWTSFIIRLP 372


>gi|322381789|ref|ZP_08055743.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154177|gb|EFX46499.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 596

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 13/254 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V  +V   R +TE++    + D+++  FV +VS+ELR+PL+ + G+++ L     G+ +
Sbjct: 340 QVVGAVAVLRDVTEEH----RMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAGTPD 395

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +  + I   S  +  LV D+LDLA ++AG M + +  + +N L   +++  +    
Sbjct: 396 ERK-ELAQVIHDESLRMGRLVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAK 454

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGD 718
           E  IR I  + +G       D  RL Q+ + +L NA   +    +V L+A          
Sbjct: 455 EREIRLICELPEGNHLVIEGDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEA 514

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  V++ G  IP +    VF RF        RG   G GLGL+IV++ I+ H G V + 
Sbjct: 515 VLIEVEDEGQGIPAEDVPYVFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQ 574

Query: 776 SSDEGVTTINCRIP 789
           S     TT +  +P
Sbjct: 575 SILGKGTTFSIFLP 588


>gi|317479496|ref|ZP_07938627.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904316|gb|EFV26139.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 649

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L     A+ K  ++K+SF+QH+++E+R+PL +I+GF+ LL   KL  +  +  +YVE 
Sbjct: 412 RKLEAARRAVEKMSQVKSSFIQHITHEIRTPLNSIVGFSTLLAQEKLDDVEKR--EYVEQ 469

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++T LL+L+ +IL++A +D+ + ++    I ++    E  +    ++ +  + ++ +
Sbjct: 470 VEGNNTYLLSLMENILNIADMDSRVWEMPREEIEVDACCKECIEGFRPEL-KLGVELEYV 528

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSI 730
               + +F A RQ L  +   +L NA+ F+ +G  + +    D    +  F +++ G  I
Sbjct: 529 PASGIMAFYAARQWLKMVLVSLLDNAVKFTEEGH-IRVSCEEDKSRHVLRFVIEDTGIGI 587

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             D    +F RF         +G GLGL+I    + L GG + +  +  G        P 
Sbjct: 588 RPDESDRIFERFYKVDTFT--KGSGLGLAIANEIMELVGGRIYLDDTYCGGCRFIVEWPM 645

Query: 791 KE 792
           K+
Sbjct: 646 KD 647


>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 916

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 11/226 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+   A + K+ F+  +S+E+R+P+  I+G T+LL  ++   LN  Q ++ E + +S   
Sbjct: 260 ESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQ---LNRDQQRFAETVQSSGRH 316

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKL 677
           LL ++NDILD + +++  M+L      L  L+ +     A    +  + +  + I   + 
Sbjct: 317 LLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPNRA 376

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPED 733
                D  RL QIF+ ++SNA+ F+S+G  VI     +AA    +    V++ G  IP +
Sbjct: 377 FMVRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEAAGSRVNLRICVEDTGIGIPPE 436

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             K +F +F     +   Q  G GLGL+I +  + L GG + I S+
Sbjct: 437 YHKKIFQQFSQADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDST 482


>gi|161506109|ref|YP_001573221.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160867456|gb|ABX24079.1| hypothetical protein SARI_04296 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 788

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 274 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 330

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++     +  +  +R 
Sbjct: 331 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 390

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 391 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 440

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 441 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 500

Query: 776 S 776
           S
Sbjct: 501 S 501


>gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
 gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
          Length = 1390

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 7/245 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQ 606
           S R+  A   + E L + D  K +F  ++S+E R+PLT I+G   ++L+TS+L   + + 
Sbjct: 331 SARSYGAQQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSEL---DVRV 387

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E    +   L  LVN +LD + + AG M+  +  + L  +  E+     + +    
Sbjct: 388 REELELAHRNGLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAG 447

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +   V           DR    ++   +LSNA+ F+ +G+ V ++   D+G  + +V + 
Sbjct: 448 LEFTVDCPPLAEPVFVDRDMWEKVVLNLLSNALKFTREGA-VTVRVTADDGVAVVTVADT 506

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE     +F RF  V         G G+GL++V+  I LHGG +   S +   TT 
Sbjct: 507 GVGIPEAEMPRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGRGTTF 566

Query: 785 NCRIP 789
             ++P
Sbjct: 567 TIQMP 571


>gi|144273|gb|AAA23052.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
          Length = 842

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 182/394 (46%), Gaps = 57/394 (14%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT----------------HIR 481
           + I+ +SE   ++   GR+ + N  +RS++  E   L PG                 H  
Sbjct: 453 DAIESVSEAFVLWDRQGRLLMCNRNYRSVFSLEPKILKPGAARAEVNRFAALAIKQDHPA 512

Query: 482 NIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSV--------------- 525
              A   R     DG W   +        ER++ +G L + +  +               
Sbjct: 513 PDGAKGVREAEMMDGRWIQIS--------ERRTAEGGLVMTAADITAIKTQEEARRRNEE 564

Query: 526 -LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            L+ ++  L  +Q  L  +       A +  TEK +A   A++ K+ F+ ++S+ELR+PL
Sbjct: 565 QLQNAVAGLERSQEQLAEL-------ARKYETEKVKA-ESANKAKSEFLANMSHELRTPL 616

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             I GF++++     G L  ++ + Y + I +S   LL L+NDILD++ ++AG M L + 
Sbjct: 617 NAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFE 676

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           ++ L D+  +  + +  +     +++  I   +L    AD + + Q+   +LSNA+ F+ 
Sbjct: 677 SMHLEDVAEDAVRLVRNRAEAAGLKLD-IDFPQLPEIEADYRAVKQVLLNLLSNAIKFTP 735

Query: 704 KGSTVILKAA--RDN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           +  +V ++    RD  GD I  SV + G  I ++    +   F  V +      +G GLG
Sbjct: 736 RAGSVTVRVEVRRDPFGDLIKVSVTDTGIGIAKEDLARLAKPFEQVESQFSKTTQGTGLG 795

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L++ +S I +H G + + S+    TT++  +P +
Sbjct: 796 LALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVR 829


>gi|83955464|ref|ZP_00964095.1| hypothetical protein NAS141_19474 [Sulfitobacter sp. NAS-14.1]
 gi|83840108|gb|EAP79283.1| hypothetical protein NAS141_19474 [Sulfitobacter sp. NAS-14.1]
          Length = 608

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 532 PL-PNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPL 584
           PL PN   +   +T V++TD +   RAL    +AL +ADE    K+ F+  VS+ELR+PL
Sbjct: 310 PLDPNGAILGWSITLVDITDRIVITRAL---EDALLRADEANRAKDEFISVVSHELRTPL 366

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T++ G   L  + +LG ++++    +E    +   L  LV++IL    +D   + L+   
Sbjct: 367 TSLKGGLALALSGRLGEIDARIRSPLEIAQRNGMRLSRLVDNILLAQKIDVDALSLDALP 426

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L  LL E  +       E  I + +    +  +   D   L QI   ++SNA+ FS +
Sbjct: 427 VDLGALLKESLEENKMFAAEQKIDLVLPKGDQTATITGDAFALRQIIDNLVSNAIKFSEQ 486

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
           GSTV    +  NG    S+K++G  IP+ M   VF RF  V N  +   +G GLGL I +
Sbjct: 487 GSTVEGSLSIRNGHVRLSIKDSGRGIPDGMEGQVFGRFEQVKNGGQYATQGSGLGLHISQ 546

Query: 763 SFINLHGGHVSISS-SDEGVT 782
                  G +   S   EG T
Sbjct: 547 QLARQMSGKLFYDSVVGEGTT 567


>gi|298241186|ref|ZP_06964993.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297554240|gb|EFH88104.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1221

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 5/235 (2%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N A ++ ++ K+ F+   S+ELR+PL  +   T L++       + + +  +  +     
Sbjct: 987  NSARKELEQRKDDFISMASHELRNPLAALKMQTQLVRKRLEKQSHHEAATALFRMEGPVK 1046

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      
Sbjct: 1047 QLERLIGELLDVSKIQAGKLEYRQETVDLDALLHEVADTMQQLSTTHAI---VVRGAAPS 1103

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            S V D+ RL Q+F+ ++SNA+ +S     V +         I  V ++G  IP++ C  +
Sbjct: 1104 SLVGDKDRLGQVFTNLISNAIKYSPGAEMVEMDLDASPETAIIRVHDHGLGIPQEQCDKI 1163

Query: 739  FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F RF       Q+   G+G+GL IV   +  HGG +++ S     +T    +P K
Sbjct: 1164 FERFYRATGPKQKAIPGLGMGLYIVAEIVKRHGGAITVDSEVGKGSTFTVTLPCK 1218


>gi|289673699|ref|ZP_06494589.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 622

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   LG     N    +
Sbjct: 148 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRR 203

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 204 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 263

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  + +F V ++G 
Sbjct: 264 LNCTAAQGL-VVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGI 322

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS D G
Sbjct: 323 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSG 374


>gi|282862260|ref|ZP_06271322.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282562599|gb|EFB68139.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1815

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 1324 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAESNLSPKQVEFA 1383

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1384 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1443

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1444 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPNSIREHLLEA 1503

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I       +F  F        R+  G GLGLSI      
Sbjct: 1504 GSLHDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1563

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1564 LLGGEIHAASEPGRGSTFTLYLP 1586


>gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260622611|gb|EEX45482.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1476

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 939  QKVSEMKIKFFTNISHELRTPLTLIKGPIQELKERE--KLSPKGLQYVDLMEKNTNQMLQ 996

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S I  N+++   ++       EN +        +     A
Sbjct: 997  LVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEVSFTFQLPDESIMVWA 1056

Query: 683  DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
            D+++L  +   I+SNA  F+ S GS  +     D+G   F  V++NG  IP+     +F 
Sbjct: 1057 DKEKLSIVIRNIISNAFKFTHSGGSIYVTTGLTDDGKRCFVRVEDNGEGIPQSKLTEIFE 1116

Query: 741  RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            RF    N      +G G+GL++ +  +NLH G +  + S EG
Sbjct: 1117 RFSQGENTKNPYYQGTGIGLALSKEIVNLHHGSI-YAESPEG 1157


>gi|190571186|ref|YP_001975544.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357458|emb|CAQ54892.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 475

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASST 618
           EAL + +  K  F   V++ELR+PL  IIGF  L+K   LGS++ SK  +YV+ I  + T
Sbjct: 231 EALEQENANKIKFFASVTHELRTPLNAIIGFAKLIKNETLGSVDHSKYKEYVDDIYNAGT 290

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677
            LL L+ND+LD +  ++  + +      LN +++   + ++ K+ E  I +K  ISD +L
Sbjct: 291 HLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLKMLSPKLKETGISLKKEISDKQL 350

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMC 735
              +AD +R+ Q+   +LSNA+ F+ +G  +  I+K   +         +NG  I +   
Sbjct: 351 -LVIADPKRMKQVIINLLSNAIKFTPQGGLIRMIIKENIEKNLLTIEFHDNGIGIMQQDI 409

Query: 736 KSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             V + F   A  G R  G G+GL + +  + L GG  +I S  +  TTI
Sbjct: 410 YKVMSVF-GQADSGYRNEGTGIGLPLSKKLVELMGGTFNIQSEAKLGTTI 458


>gi|325684937|gb|EGD27081.1| sensor histidine kinase [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 402

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 128/232 (55%), Gaps = 12/232 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYV 610
           RA+ E+    +  ++ K+  + +VS+++R+PLT+IIG+  LLK    G++ S++   +Y+
Sbjct: 155 RAINEE----KAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKN---GAVTSQEDMLKYI 207

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                 +  + +L ND+ +  T+ +   KLN + I +  ++ +V      +  +  I   
Sbjct: 208 NIAYDKAEQMRSLANDLFEYTTLKSTKTKLNVTPINIKGMMEQVAAGFELEAEKKGIAFS 267

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
           V +        AD ++L+++++ ++SNA+ +++  S + L A   N + +   V+NNG  
Sbjct: 268 VKARPDDLIVNADVEKLVRVYNNLISNALKYAAGASRINLVANLINHEQVELRVENNGEP 327

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           IP+D  K +F+RF  V ++   +  G GLGLSIV+  + LHGG +   S+ +
Sbjct: 328 IPKDKLKKIFDRFYRVESSRNTKTGGTGLGLSIVQGAVELHGGTIRCESNKD 379


>gi|320328898|gb|EFW84897.1| ATPase-like histidine kinase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 973

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 9/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +G  +S+     +
Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 579

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A     + +F V ++G 
Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 698

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTL 757

Query: 789 PSKE 792
           P  E
Sbjct: 758 PMHE 761


>gi|297621362|ref|YP_003709499.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
 gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
          Length = 1005

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 11/236 (4%)

Query: 561  ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            A +KA+E    K++F+ ++S+E+R+PL  +IG T LL  +    L+  Q +Y   I  S 
Sbjct: 770  ARKKAEEANIAKSTFLANMSHEIRTPLNGVIGMTSLLLNT---PLDKSQEKYANRIDLSG 826

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             +LL ++NDILD + ++AG + L      L +++ EV + +  K  E  + +++  +   
Sbjct: 827  KVLLEIINDILDFSKIEAGELNLEKIPCNLEEIVEEVGELMQPKAEEKGLNLEISYAHDT 886

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735
                + D  R+ Q+   + SNA+ F+ +GS V +K +     FI   V + G  IP++  
Sbjct: 887  PKHLIGDPTRIRQVIMNLTSNAIKFTQEGS-VAIKVSNPKKAFIRVEVTDTGIGIPQEKK 945

Query: 736  KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F +F        R+  G GLGL+I +  I +  G +   S +   +T    IP
Sbjct: 946  MHIFEKFSQADVSTTRKFGGTGLGLAICKQLIEIMEGKIGCESIENKGSTFWFEIP 1001


>gi|255035539|ref|YP_003086160.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948295|gb|ACT92995.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1344

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 557  EKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            EK EALR  + DE+K+ F  ++++E R+PLT II  + L K    G+++    Q +  I 
Sbjct: 833  EKREALRLKEMDELKDRFFSNITHEFRTPLTLII--SPLQKLLSEGAVSGPIRQTLRGIE 890

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +S  LL LVN+ LD + ++ G M++N S   L   ++   +S      E  I +   S 
Sbjct: 891  KNSRQLLGLVNEFLDFSKLNDGQMQVNRSAGELAPFVSAHVRSFEAAASEKQITLSFASG 950

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPED 733
               G ++ D+++  +I   +L NA+ F+ +   + +   + +GD  +  V +NG  I  D
Sbjct: 951  DVEGFYLFDQEKWSKIVINLLGNALKFTPEKGAISVGLRQASGDCIVLEVWDNGPGIATD 1010

Query: 734  MCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F RF     +A R Q  G G+GL++V+  + + GGH+ + S           +P
Sbjct: 1011 QQERIFERFYQVDGSAIRSQ-GGTGIGLALVKEMVGVMGGHIQVDSEPGKYARFCVELP 1068


>gi|153930827|ref|YP_001382755.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153937672|ref|YP_001386306.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|170754453|ref|YP_001780006.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152926871|gb|ABS32371.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152933586|gb|ABS39085.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|169119665|gb|ACA43501.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 464

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D++KN F+  VS+ELR+PLT+I G+   L ++++     K    ++ I   S  L  +
Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G MKLN   I + ++++ V++ +    + N I  K     KL +   D
Sbjct: 297 VEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R R+ Q+   +L NA  F+ +G  V L    +       VK+ G  I ++    V  +F 
Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G+ +  G+GLSI +  I LH G + I S +   TTI+ ++P
Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|153216224|ref|ZP_01950328.1| sensor histidine kinase FexB [Vibrio cholerae 1587]
 gi|124114411|gb|EAY33231.1| sensor histidine kinase FexB [Vibrio cholerae 1587]
          Length = 604

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT---PLSGEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 LQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +     L S V  D  RL Q+   +LSNAM F+ +G  V+  +A     + +    V++
Sbjct: 381 DLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQHAEITIEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE   + +F  +    S        G G+GL++    I L GG +S+ +S+EG  
Sbjct: 441 TGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDISV-NSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 16/251 (6%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TM+T +        E+ L +  +A  ++  IK  F   VS+ELR+PL  +IG  +LL  +
Sbjct: 247 TMMTVLEAR-----EQELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNT 301

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L      Q +YV+    S   LL+L+ +ILD + +++G  KL+     L + L++V   
Sbjct: 302 EL---TPNQREYVQVACGSGETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGL 358

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
           +A +    ++ I  +    +  F+  D  R+ QI   ++ NA+ F+ +G   I    L+ 
Sbjct: 359 LAAQAQRKDLEIGYVVAENVPLFMRGDATRIRQILINLMGNAVKFTEQGEVSIEVRLLEK 418

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                   F V++ G  IP +    VF  F        R+  G GLGL+I    ++L GG
Sbjct: 419 KAKKLVLHFEVRDTGIGIPLEFLARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGG 478

Query: 771 HVSISSS-DEG 780
            + + ++ D+G
Sbjct: 479 DLGVENNLDKG 489


>gi|299145534|ref|ZP_07038602.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
 gi|298516025|gb|EFI39906.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
          Length = 500

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++       +++ +V 
Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHENNIRIK 670
            IS +S  L+ L++DILDL+ +++  +K  YS   L  ++ ++ K+ +   + E  I IK
Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPE--IEIK 373

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNG 727
            I          D  RL Q+    ++NA  F+ +G      ++    D+   +F V++ G
Sbjct: 374 AILPDDDIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLF-VEDTG 432

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP++  K +F+RF   N     ++G GLGLSI ++ +    G +S+ S
Sbjct: 433 EGIPQECQKEIFDRFYKVNTF---KQGTGLGLSICKTIVEHLQGSISVVS 479


>gi|296184967|ref|ZP_06853378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296050749|gb|EFG90172.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 473

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 141/273 (51%), Gaps = 10/273 (3%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL---RKADEIKNSFVQHVSYELRSPL 584
           Y I  L   + ++ + +++ S+  ++ ++EK + +   R+ ++++  F  ++S+EL++PL
Sbjct: 163 YYIYRLSAEEIVVVYDDISKSIEQQKTISEKEQIIYKTRELEKLRTEFFANISHELKTPL 222

Query: 585 TNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASST---ILLNLVNDILDLATVDAGIMKL 640
             I+G   L K       N   + + +  I+        LL L+N+++D   +D+  ++L
Sbjct: 223 NIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLLRLINNLIDSTEIDSKFIEL 282

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N     + +L+ E+ QS+A K   NNI I   +D +      D  ++ +I   +LSN++ 
Sbjct: 283 NMVNCNIVNLVEEITQSVA-KYINNNISITFDTDLEEKIIACDLDKVGRIILNLLSNSVK 341

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           F+  G ++ +    D      +VK+ G  IP++   ++F+RF  V  +   +  G G+GL
Sbjct: 342 FTEPGGSIFVNIIDDKDYITITVKDTGIGIPQNKLNTIFDRFRQVDKSFTRKNEGSGIGL 401

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SIV+S + +H G + + S     T    ++P+K
Sbjct: 402 SIVKSLVEMHKGSIFVESKYGIGTKFTIKLPAK 434


>gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 872

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 122/236 (51%), Gaps = 8/236 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +A   A+  K+ F+  +S+ELR+PL  I+GF+ L+    +  L+  Q + +  I+ S  
Sbjct: 405 RDAAEAANRAKSVFLSSMSHELRTPLNAILGFSALMSRDTM--LSHIQRENLNIINRSGE 462

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+L+ND+L++A ++AG +++ +    L  L+ +V   +A +  E  +++ V       
Sbjct: 463 HLLSLINDVLEMAKIEAGRVQVLHEAFDLGALVRDVSDMMAVRAQEKGLQLLVDQSSDFP 522

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSI-PED 733
            ++  D  RL Q+   ++ NA+ F+  G   +    + N      +  V+++G  I PED
Sbjct: 523 RYIMGDEARLRQVLINLVGNAVKFTQHGGITMRFGIKPNLLPERLLIEVEDSGIGIKPED 582

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F+ FV       ++G GLGL+I   F+ L GG +++ S+       +  +P
Sbjct: 583 QQR-IFDAFVQIGDLSAQKGTGLGLTITRQFVQLMGGVITLESTPGVGAVFSVELP 637


>gi|213018588|ref|ZP_03334396.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995539|gb|EEB56179.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 444

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASST 618
           EAL + +  K  F   V++ELR+PL  IIGF  L+K   LGS++ SK  +YV+ I  + T
Sbjct: 200 EALEQENANKIKFFASVTHELRTPLNAIIGFAKLIKNETLGSVDHSKYKEYVDDIYNAGT 259

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677
            LL L+ND+LD +  ++  + +      LN +++   + ++ K+ E  I +K  ISD +L
Sbjct: 260 HLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLKMLSPKLKETGISLKKEISDKQL 319

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMC 735
              +AD +R+ Q+   +LSNA+ F+ +G  +  I+K   +         +NG  I +   
Sbjct: 320 -LVIADPKRMKQVIINLLSNAIKFTPQGGLIRMIIKENIEKNLLTIEFHDNGIGIMQQDI 378

Query: 736 KSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             V + F   A  G R  G G+GL + +  + L GG  +I S  +  TTI
Sbjct: 379 YKVMSVF-GQADSGYRNEGTGIGLPLSKKLVELMGGTFNIQSEAKLGTTI 427


>gi|30026146|gb|AAO47030.1| ethylene receptor [Arabidopsis thaliana]
          Length = 505

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 132/260 (50%), Gaps = 30/260 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 128 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 187

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 188 ---TPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 244

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAAR 714
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS     ++ K+  
Sbjct: 245 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDT 304

Query: 715 DNGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
              DF              VK++G+ I P+D+ K +F +F        R   G GLGL+I
Sbjct: 305 RAADFFVVPTGSHFYLRVKVKDSGAGINPQDIPK-IFTKFAQTQSLATRSSGGSGLGLAI 363

Query: 761 VESFINLHGGHVSISSSDEG 780
            + F+NL  G++ I S   G
Sbjct: 364 SKRFVNLMEGNIWIESDGLG 383


>gi|332974890|gb|EGK11803.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 463

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 9/236 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +L + + ++  FV +VS+E++SPL +I GF+  L+T  L     ++ QY+  I   S  L
Sbjct: 232 SLERLEAMRQEFVSNVSHEIQSPLASIQGFSQTLRTESLP--EEEREQYLSIIENESRRL 289

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +L   +L LA++D     L+ +   +   + EV + +     +  + IK  +D      
Sbjct: 290 SSLSKQLLMLASLDKEETALDQTEFDVAAQIREVLRMLEWNWRDKELAIK--TDLPPTRI 347

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVF 739
            AD + L Q+++ +L+NA+ F+  G T+ +     + G     V++ G  IP +    +F
Sbjct: 348 RADAKLLHQVWTNLLNNAIKFTEPGGTITVTIDDFEEGGIEVKVRDTGVGIPGEDLPHIF 407

Query: 740 NRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF     S + +G+  G GLGLS+V+  ++LHGG +S+ S     T I   +P K
Sbjct: 408 ERFYKADKSRSRKGKESGSGLGLSVVKKVVDLHGGTISVESEPGAGTGIRVWLPGK 463


>gi|238797166|ref|ZP_04640668.1| Signal transduction histidine-protein kinase barA [Yersinia
           mollaretii ATCC 43969]
 gi|238719013|gb|EEQ10827.1| Signal transduction histidine-protein kinase barA [Yersinia
           mollaretii ATCC 43969]
          Length = 915

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 13/233 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASS 617
           N+  ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+
Sbjct: 273 NKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSA 328

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + I++  
Sbjct: 329 NNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHINNDV 388

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPE 732
               V D  RL QI + +L NA+ F+ +G+  IL A +         +  + + G  I E
Sbjct: 389 PEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVQALTAQRVTLVVEIHDTGIGISE 448

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
                +F  F        RR  G GLGL I E  +   GG +S +S  D G T
Sbjct: 449 SQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGST 501


>gi|168211770|ref|ZP_02637395.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170764305|ref|ZP_02640759.2| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170710282|gb|EDT22464.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170713459|gb|EDT25641.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 821

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 175/370 (47%), Gaps = 28/370 (7%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------RNIAATC 487
           +++G T +++ + +     +G+I   N A   +    E  L    +        N+    
Sbjct: 434 RLRGVT-ENIKDLIFTIDFEGKISYVNKAVIDVLGYSEEELIGKNYYDLLLVESNLNIID 492

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT- 546
           S+Y+NE         I+T   D+ +S +G ++L S S    S I   N    L +V V  
Sbjct: 493 SKYFNED-------KILTI--DKVRSKKGLVQLESIS----SRIK-DNKNNTLGWVRVAR 538

Query: 547 --DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN- 603
             + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     LL TSK    N 
Sbjct: 539 NIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANF 598

Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L  ++  S+   +
Sbjct: 599 ANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYV 658

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +    D       
Sbjct: 659 ESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADETWVDIR 718

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IP  M + +F RF+ N     R   G G+GLS+V+S + LH G V +  S+E 
Sbjct: 719 VKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNES 778

Query: 781 VTTINCRIPS 790
            +  +  +P+
Sbjct: 779 GSEFSILLPN 788


>gi|163851098|ref|YP_001639141.1| histidine kinase [Methylobacterium extorquens PA1]
 gi|163662703|gb|ABY30070.1| Histidine kinase [Methylobacterium extorquens PA1]
          Length = 1937

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 12/237 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ ++ 
Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I+A+ T LL+L+NDILDL+ +++G + L    + L D+   + ++      E ++   
Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFV 1349

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721
            + +  G   S   D +RL Q+   +LSNA  F+ KGS V LK     G            
Sbjct: 1350 IEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQWIAM 1408

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            SV + G  I ED  + +F  F        R+  G GLGL+I      L GG + + S
Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465


>gi|160880259|ref|YP_001559227.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160428925|gb|ABX42488.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 464

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +L K + I+      VS+ELR+PLT I    + +          +     E I+     +
Sbjct: 238 SLEKQEGIRKQLTSDVSHELRTPLTTIGTHIEAMIEGVWEPTTERLKSCYEEINR----I 293

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            NLV D+  LA V+   +KLN +++ + ++++ +K +  T+++  ++ + VI  G   + 
Sbjct: 294 TNLVKDLEQLAKVENDNLKLNITSVNILEVIDTIKDNFETEIYNKSLDVSVI--GTASTI 351

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D++R+ Q+   +LSNA+ ++     +++       + +  +K+NG  IPE+    +F 
Sbjct: 352 LVDKERISQVIINLLSNAIKYTPDFGKIVISLEDYETNLVIQMKDNGIGIPEEELPFIFE 411

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF        RR  G G+GL+IV+S ++ HGG V +SS  E  T     +P K
Sbjct: 412 RFYRADKSRNRRTGGAGIGLAIVKSVVHSHGGKVEVSSKLETGTVFRVILPRK 464


>gi|307824660|ref|ZP_07654884.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307734314|gb|EFO05167.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 929

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 6/246 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  L  K EA R A+  K+ F+  +S+ELR+P+  I+GF  LL+T +   +   Q+  
Sbjct: 545 RTELLLKAKEEADR-ANNAKSEFLSRMSHELRTPMNAIMGFAQLLETDRETPITLDQADN 603

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  +   LL L+N++LDLA ++ G ++L+   + +  L+ E    +        I +
Sbjct: 604 VREIRHAGQHLLELINEVLDLARIETGRIELSLEPVEVPLLIGECMALLQPLTLGRRIEL 663

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGS 728
           K+  DG  G+  ADR RL QI   +LSNA+ ++  +G+  I       G    +V ++G 
Sbjct: 664 KLDIDGT-GTVQADRLRLRQILLNLLSNAIKYNRDRGNVHITCQPVAAGRIRIAVCDSGR 722

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D    +F  F  + +A+ G   G G+GL++ +  +   GG + + S     +T   
Sbjct: 723 GIAVDAMTRLFKPFERIESAYDGI-EGTGIGLALSKRLVEAMGGTIGVESVVGAGSTFWV 781

Query: 787 RIPSKE 792
            +P+ E
Sbjct: 782 ELPAAE 787


>gi|91780564|ref|YP_555771.1| multi sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
 gi|91693224|gb|ABE36421.1| Multi sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
          Length = 1344

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 13/243 (5%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +TD   +   L E+ E L +AD  KN F+  + +ELR+PL  +    DLL +    +++ 
Sbjct: 955  LTDRSLSNAQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSSGDLLASE---TIDP 1011

Query: 605  KQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIAT 660
            +Q  + V  I      +  LVN++LDL  + +G ++L    + L  ++    EV Q I  
Sbjct: 1012 RQKSWAVGVIQRQGRSMTQLVNEMLDLTRITSGSIELRRQAVTLKAVIQSAVEVCQPIID 1071

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + H + + + +  +  L     D  RL Q+   I+ NA  ++  G  + L A R      
Sbjct: 1072 ERH-HTLSVSLPDEPVL--MYVDPTRLSQVVENIVINAARYTEPGGHISLTATRTGRRLS 1128

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQ-RRGVGLGLSIVESFINLHGGHV-SISSS 777
              VK+NG  IP  M  ++F+ FV      GQ   G+G+GLS+V   + LHGG V +IS  
Sbjct: 1129 LRVKDNGRGIPASMLSTLFDMFVQGPVPYGQLHNGLGVGLSVVRRLVELHGGSVRAISDG 1188

Query: 778  DEG 780
              G
Sbjct: 1189 RTG 1191


>gi|325958802|ref|YP_004290268.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330234|gb|ADZ09296.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 605

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 9/254 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F++VT   +AE  +    + L +++     F    S++L+ PL  I  FT LL+    G
Sbjct: 356 AFMDVTKRKKAEMQMASLLKELERSNRELEQFAYVTSHDLKEPLRMISSFTKLLEQKFKG 415

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+     Y+ YI   +  +  L++D+L  + +   +    Y  + L +++NE   ++  
Sbjct: 416 QLDEDADNYINYIVDGTKRMQRLLDDLLAYSRISNEV---KYEPLKLTEIVNESIHNLKV 472

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-F 719
            + EN   I V     L   VA+R +++Q+F  +++NA+ F SK   VI  +  ++G+ +
Sbjct: 473 AIDENQAEITV---DPLPEVVANRTQMIQLFQNLIANAIKFQSKKKPVIHVSCEESGNKY 529

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-D 778
            FSV++NG  I       VF  F       +  G G+GLSI +  +  H G V + S  D
Sbjct: 530 YFSVQDNGIGIDSKNLDRVFKMFQRLHTADEYDGTGIGLSITKKIVQQHSGAVWVESKLD 589

Query: 779 EGVTTINCRIPSKE 792
           EG +T    IP  E
Sbjct: 590 EG-STFYFSIPIDE 602


>gi|293371966|ref|ZP_06618367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292633084|gb|EFF51664.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 500

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++       +++ +V 
Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHENNIRIK 670
            IS +S  L+ L++DILDL+ +++  +K  YS   L  ++ ++ K+ +   + E  I IK
Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPE--IEIK 373

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNG 727
            I          D  RL Q+    ++NA  F+ +G      ++    D+   +F V++ G
Sbjct: 374 AILPDDDIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLF-VEDTG 432

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP++  K +F+RF   N     ++G GLGLSI ++ +    G +S+ S
Sbjct: 433 EGIPQECQKEIFDRFYKVNTF---KQGTGLGLSICKTIVEHLQGSISVVS 479


>gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1624

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 11/250 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T V++TD  RAER L    E   +   +K++F+ ++S+E+R+P+  IIG + L   S   
Sbjct: 847  TLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKS--- 903

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             L  +Q+ YV  I  +   LL ++NDILD + ++AG + +     +L+ +L  +   +  
Sbjct: 904  GLTPRQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGY 963

Query: 661  KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
            K     + + + ++       V D  RL QI     +NA+ F+ +G   V ++    +G 
Sbjct: 964  KAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVRVVERHGR 1023

Query: 719  FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +   F V++ G  +  +    +F  F        RR  G GLGL+I ++   L GG V 
Sbjct: 1024 RVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVG 1083

Query: 774  ISSS-DEGVT 782
              S+  EG T
Sbjct: 1084 AESAVGEGST 1093


>gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator
           receiver domain [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337316|gb|AAO75121.1| rteA, two-component system histidine kinase, with response
           regulator receiver domain [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 807

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 16/207 (7%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVD 634
           ++++LR+PLT I G+ +LL     G ++ K+  +Y  +I  SS  ++ LVN +++   +D
Sbjct: 335 IAHDLRAPLTAIKGYAELLP----GEVDEKRKDEYAVHIVRSSDYMIGLVNSLIEFYLLD 390

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-----DGKLGSFVADRQRLLQ 689
           AG  K+N +      L +E+      K+H  ++R + ++     +G       DR R++Q
Sbjct: 391 AGKGKMNVTVFRPLSLFDEI-----VKLHTPSVRKEGLTLCTDFEGLDTVVEGDRPRIMQ 445

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           I + +LSNA+ F+ KG  + L+AA   G+  FSV++ G  + ED  K +F  F    +  
Sbjct: 446 IANNLLSNAIKFTRKGK-ISLQAAYGQGELRFSVQDTGPGMTEDEQKRIFRAFERLDNAR 504

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776
              G GLGL+IV     L GG +++ S
Sbjct: 505 YLPGFGLGLAIVSRLTELLGGRITVES 531


>gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain [Bradyrhizobium sp. BTAi1]
          Length = 1299

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQY 609
           AER    + EAL + D  K +F  ++S+E R+PLT ++    D+L  +  G L ++Q   
Sbjct: 344 AER---RRAEALAEIDRAKTTFFSNISHEFRTPLTLMLSPLEDMLARADAG-LGAEQLAM 399

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +   LL LVN +LD + ++AG M  ++  + L  L +E+  +  +      +R+
Sbjct: 400 LNLIHRNGIRLLKLVNTLLDFSRIEAGRMTASFEPVDLAALTSELVSNFRSATDRAGLRL 459

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728
            + +         DR    +I   +LSNA  F+  G  +V +  A D     F+V + G+
Sbjct: 460 AIEAAPLPQPVYVDRDLWEKIVLNLLSNAFKFTFDGGISVTIGIAADMRHAEFAVHDTGT 519

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D    +F RF  V+ A      G G+GL++V+  + LHGG ++  S     +    
Sbjct: 520 GIPPDELPHLFERFRRVAGARGRSYEGSGIGLALVQELVKLHGGEITADSELGRGSVFTV 579

Query: 787 RIP 789
           R+P
Sbjct: 580 RLP 582



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 34/237 (14%)

Query: 555  LTEKN---EALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            LTE+    EA R+A +++        V+++  + LT I    DLL+  +L     +  +Y
Sbjct: 911  LTERRQAEEAFRQAQKMEAIGQLTGGVAHDFNNLLTVIRSSADLLRRRQLPP--ERMRRY 968

Query: 610  VEYISASSTILLNLVNDILDLA---TVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMH 663
            V+ IS ++     L   +L  A    ++  +         + ++L  V      IA  + 
Sbjct: 969  VDAISDTADRAAKLTGQLLAFARRTPMERQVFDAARHLEQIAEMLQTVLGAPAVIALDLR 1028

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNG----- 717
               + + V           D  +       +++NA D       + ++  R D+G     
Sbjct: 1029 ARPLPVDV-----------DINQFDTALVNLVANARDAMDGRGVLTIRGERVDHGGPTAP 1077

Query: 718  -DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              F+  +V + G  IP +    +F  F +   +G  RG GLGLS V  F++  GG V
Sbjct: 1078 EQFVSIAVSDTGCGIPPEQLDRIFEPFFTT--KGVGRGTGLGLSQVYGFVHQSGGRV 1132


>gi|157162694|ref|YP_001460012.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
 gi|157068374|gb|ABV07629.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
          Length = 778

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG + ++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIKVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 597

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 127/248 (51%), Gaps = 7/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V  +V   R +TE+    R  D+++  F+ +VS+ELR+P++ + G+++ +    + S  
Sbjct: 348 HVRGAVAVLRDMTEE----RLHDKLRKDFIANVSHELRTPISMLQGYSEAI-IDGIASSE 402

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++++  + I   S  +  LVN++LDLA ++AG ++LN  TI   D    V +       
Sbjct: 403 EEKTELAQIIYDESLRMGRLVNELLDLARMEAGHIQLNVETISFTDFTKRVLRKFQGIAK 462

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E+ I++    +  +    AD  R+ Q+ + ++ NA+  + +G  V L+    +     ++
Sbjct: 463 EHGIKLSGDIEENIQYVYADEDRIEQVLTNLIDNAIRHTPEGGEVTLQMEVLDQGVKVNI 522

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I E+    VF RF     A    R G GLGL+IV++ +  H G VS+ S     
Sbjct: 523 QDTGIGISEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVHSKLNEG 582

Query: 782 TTINCRIP 789
           TT +  +P
Sbjct: 583 TTFSFFLP 590


>gi|254696347|ref|ZP_05158175.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 256

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 94/194 (48%)

Query: 27  FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86
           F    G +   ++    LIR R+ +A + NE  S  +++     +  +LL   +   +VW
Sbjct: 63  FSIFLGGMGAALLSAGWLIRDRSKIANENNELRSKFADLNLIAQRNEALLNMKDQRIVVW 122

Query: 87  DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146
           DG +   +++GQL      PQ     L+F  WL+      L +A   LR++ ++FDL  E
Sbjct: 123 DGHNVRADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVE 182

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
           T N   + + GR SG  A     SL G+ +E A    + ++L++ I + + L D ++   
Sbjct: 183 TVNGSLLDVHGRTSGGFAVACFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPA 242

Query: 207 WHRDQAGDILWANI 220
           W RD  G I W N+
Sbjct: 243 WLRDGNGRIEWVNL 256


>gi|238062161|ref|ZP_04606870.1| GAF sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149]
 gi|237883972|gb|EEP72800.1| GAF sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149]
          Length = 1455

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 16/255 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A   L +K + L +A   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ 
Sbjct: 1027 ARLGLEDKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLAENSEQNLTPKQIEFA 1086

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  S + LL L++DILDL+ ++AG M +  + +   ++   V+Q+ A +  E  +  +
Sbjct: 1087 RTIHGSGSDLLRLIDDILDLSKIEAGRMDVEPTEVQFAEIRGYVEQAFAPQAEEKGLDFQ 1146

Query: 671  VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF--------- 719
            V+   +L  + V D QRL QI   +LSNA+ F+  G+ T+ +  A +N  F         
Sbjct: 1147 VLLAKELPPALVTDAQRLQQILRNLLSNAVKFTDSGAVTLRIAPAPENVVFDVPALINAR 1206

Query: 720  ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F+V + G  I +D    +F  F        RR  G GLGLSI      L GG +++
Sbjct: 1207 QVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGSITV 1266

Query: 775  SSSDEGVTTINCRIP 789
            SS+    +T    +P
Sbjct: 1267 SSAPGEGSTFTLYVP 1281


>gi|209809121|ref|YP_002264659.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010683|emb|CAQ81070.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 891

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 132/249 (53%), Gaps = 16/249 (6%)

Query: 547 DSVRAERALTE-----KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +++ +ERA+ E       E   +A+  K++F+ ++S+E+R+PL  IIG + +L  +KL  
Sbjct: 356 NALISERAMNEDKIVGAKEEAEQANLAKSTFLANMSHEIRTPLNGIIGMSGILSETKLTP 415

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +   Q  Y+  I  SS  LL L+NDILD++ +++G + L+  +  L +++ +    I +K
Sbjct: 416 I---QHDYLNTIETSSQTLLILINDILDISKIESGNLSLHPHSTDLREIIFDTVSIIISK 472

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
            +E ++ + + I      S + D  RL QI   + SNA+ F+ KG   +     K   + 
Sbjct: 473 ANEKHLNLIINIPPDLPSSLLLDDHRLRQILMNLASNAVKFTPKGHVQLDVEFTKKENNT 532

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            +   SV ++G  I ++   S+F  FV       R+  G GLGL+I +  ++L  G  ++
Sbjct: 533 VELTISVSDSGVGIEQNKLNSIFEPFVQEDSSITRQFGGTGLGLAISKQLVDLMDGEFTV 592

Query: 775 SSSD-EGVT 782
            S+  EG T
Sbjct: 593 KSTKGEGST 601


>gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
 gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
          Length = 1129

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ AD++K+ F+   S+ELR+PL  +IG  + L +   G + + Q   ++ 
Sbjct: 444 KLIQKQNQELQLADKLKDEFLATTSHELRTPLHGMIGIAETLVSGANGGIPASQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +  +  +    IRI   
Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIEKSAVSLASATRLVLELSSHLLGNKTIRIINQ 563

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L +  AD QRL Q+   ++ NA+  +S+G  VI     D       V + G  IP 
Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKHTSEGKIVISANIIDE-QVRVQVVDTGQGIPA 622

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 623 EYLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGTLYVSSQPMVGTTFSFTLP 681


>gi|148378356|ref|YP_001252897.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|148287840|emb|CAL81906.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 464

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D++KN F+  VS+ELR+PLT+I G+   L ++++     K    ++ I   S  L  +
Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G MKLN   I + ++++ V++ +    + N I  K     KL +   D
Sbjct: 297 VEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R R+ Q+   +L NA  F+ +G  V L    +       VK+ G  I ++    V  +F 
Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G+ +  G+GLSI +  I LH G + I S +   TTI+ ++P
Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|117618906|ref|YP_855570.1| response regulator/sensor histidine kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560313|gb|ABK37261.1| response regulator/sensor histidine kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 1142

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+E+R+P+  IIG  + L+ +   SL+ +Q Q V  I+  +  LL L+ ++L
Sbjct: 562 KADFLATMSHEIRTPMNGIIGMAEQLRFT---SLDPEQRQMVGIINQGAEGLLQLIGNVL 618

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D + +DAG M L  ++ +L +L++ V    ++++    +++ +  D ++G+ F  D  RL
Sbjct: 619 DYSKLDAGKMALAPTSFLLRELIDSVLTMTSSELQRKGLQLYLRVDDEVGARFYGDVLRL 678

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNR 741
            Q+   + SNA+ F+ +G   I  + R  G+       +  V++ G  + ED+   VFN 
Sbjct: 679 KQVLFNLASNAIKFTERG--FIELSIRVEGETDEEQWLLLGVQDTGIGMSEDVQARVFNA 736

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F     A      G GLGLSI ++   L GG + + S+    T I   IP
Sbjct: 737 FEQADGATTRSYGGTGLGLSISQTLATLMGGRLRLESAPGLGTHIGLSIP 786


>gi|312144338|ref|YP_003995784.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904989|gb|ADQ15430.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 592

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 163/340 (47%), Gaps = 32/340 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + +GV     +GR+ L NPA + ++  +E  +     I       S  +N      L  +
Sbjct: 263 MVDGVIATDSEGRVSLINPAAQKIFNIDEQAIKGKNLI-------SSLFNHRLDMYLQRS 315

Query: 503 IITSFDDERKSLQGTL--ELLSDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEK 558
           +     DE++S+   +  +     +++ + IPL   N       + +TD       +TE 
Sbjct: 316 L-----DEKESISREIIYQNPDKKIIQTTFIPLLGDNKDINGGVIVLTD-------ITE- 362

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
              LRK + ++N FV +VS+ELR+PLT+I+G+ D L  S +    +K+ ++++ I   + 
Sbjct: 363 ---LRKLETVRNDFVANVSHELRTPLTSILGYLDTLLESDIEDQKTKE-KFLKIIKEETN 418

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ D+L+L+ +++   +L Y    L     +V   +       +I I +  +  L 
Sbjct: 419 RLSLLITDLLNLSKIESQSFEL-YPGDFLK-TFQKVYHLLEKNAQLKDININLEIEDDLP 476

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                R+++ Q+   ++ NA+ +SS G T+ +   + +    F +++NG  IP D  + +
Sbjct: 477 QVYMVREQVEQVLINLIDNAIKYSSSGGTINISVQKKSDKLYFEIQDNGIGIPVDEQERI 536

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F RF  V  A   +  G G+GLSIV + I  HG  + + S
Sbjct: 537 FERFYRVDKARSRELGGTGIGLSIVRNIIKQHGSEIKVES 576


>gi|229103766|ref|ZP_04234446.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28]
 gi|228679642|gb|EEL33839.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28]
          Length = 448

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G TV           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELP 447


>gi|119503200|ref|ZP_01625284.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2080]
 gi|119460846|gb|EAW41937.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2080]
          Length = 664

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 10/227 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EA   AD  K SF+ ++S+E+R+P+  ++G   L+K ++   L+ +Q  Y + I  S+
Sbjct: 245 RDEAQHVAD-TKTSFLANMSHEIRTPMNGVVGMISLIKETE---LSKRQRVYFDTIEKSA 300

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGK 676
             LL +++DILD   +++G +++  +   L+DLL  +      +     ++ +++S DG 
Sbjct: 301 AGLLVVIDDILDFTKLESGHLRIRTAPFSLSDLLATLNTIFEMQAANKGLKFQLVSADGL 360

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNNGSSIPED 733
               + D  RL Q+   ++ NA+ F+ +GS  +L    A      I F V + G  IPE+
Sbjct: 361 PDRVIGDPARLRQLLLNLIGNAVKFTDEGSVELLVTPIAESEASLIRFEVVDTGIGIPEE 420

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
               +F  F        R   G GLGL++      L GG VS SS++
Sbjct: 421 KQPGIFKEFYQVDITSTRAYGGTGLGLALCRELAQLMGGSVSFSSTE 467


>gi|323482860|ref|ZP_08088261.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323403785|gb|EGA96082.1| sensor protein [Clostridium symbiosum WAL-14163]
          Length = 374

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 6/240 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VN+   +   R L +K    R+A+  KN  + +V+++LR+PLT+IIG+ +LL + K+   
Sbjct: 117 VNLNKMMEDIRRLMDKE---REAERTKNELITNVAHDLRTPLTSIIGYLELL-SGKVQIP 172

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q +Y++   A S  L  L+ D+     ++ G M ++   + +  LL+++ +      
Sbjct: 173 QEMQKKYIDIAYAKSKRLEKLIEDLFGFTKMNYGKMTMHVGKVDVVKLLSQLLEEFYPSF 232

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N+  ++ S+       AD   L ++F  +++NA+ + + G  V++K          S
Sbjct: 233 VDKNLSYELQSNVPGKVITADGNLLARLFDNLINNAIKYGADGKRVLVKIQVTEPTVTVS 292

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V N G  IP D    +FN+F  V  +      G GLGL+I ++ +++HGG + ++S   G
Sbjct: 293 VTNYGYVIPADELPLIFNKFYRVEQSRSTNTGGTGLGLAISKNIVDMHGGSIQVTSDLNG 352


>gi|331659497|ref|ZP_08360439.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
 gi|315297924|gb|EFU57194.1| PAS domain S-box [Escherichia coli MS 16-3]
 gi|331054079|gb|EGI26108.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
          Length = 778

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQLVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10]
 gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10]
          Length = 1104

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 5/236 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  E LRKAD +KN F+   S+ELR+PL  +IG  + LK    G         ++ I AS
Sbjct: 423 EALENLRKADALKNEFLAVTSHELRTPLYGMIGIAESLKEGAAGEPPEDMKDQLDTIVAS 482

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L +L+NDILD + +  G ++L+   + +  L + V       +    + +++     
Sbjct: 483 GNRLAHLINDILDFSKLKHGSLRLDVKAVDVKHLASFVTAVTGPLIAGKPVLMQIDMPDD 542

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735
           L    AD  R+ Q+   ++ NA+ F+ KG   +  +A+  G F+   V + G  IP+   
Sbjct: 543 LPRVKADPNRIQQVLYNLVGNAIKFTEKGRITL--SAKAAGKFVTVRVSDTGIGIPKQER 600

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++F+ FV        R  G G+GL+I +  + LH   + + +  E   +    +P
Sbjct: 601 DAIFDPFVQVDQLSDHRPDGTGIGLTITKQLLELHDSRLEVDTDTEEGASFFFALP 656



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 122/247 (49%), Gaps = 14/247 (5%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            ALT  N++L  A++ +   + ++++EL +P+  I  +   +++ + G +      Y + +
Sbjct: 843  ALTRANKSLVAAEDARKQLLSNIAHELGTPVALIHSY---MQSVRAGLIAMDDPYYHQQV 899

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 IL  L++D+ DLA  +     L   T  ++D L +V ++   ++ +++ R +   
Sbjct: 900  EKKIQILNRLISDLFDLARFEQDHKILQRETFSVSDWLTKVDETCRFEVTQHHRRYEGPE 959

Query: 674  DGKLGSFV------ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVK 724
             G    +        D +R+ Q+ S ++ N++ F+++    I   A    +    +  + 
Sbjct: 960  IGAFEPYKREWYCHVDVERMDQVLSNLIVNSVKFTTEDDGTIRITAEWDLNERKLVIGIH 1019

Query: 725  NNGSSIPEDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            +NG+ IP++    +F+RF  +  H G + +G GLGL+IV+  I  HGG V ++S     T
Sbjct: 1020 DNGAGIPKEAVPFMFDRFYRAGDHSGFKPKGSGLGLAIVKQIIESHGGEVDVTSEQGKGT 1079

Query: 783  TINCRIP 789
            +    +P
Sbjct: 1080 SFFITVP 1086


>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1407

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 13/236 (5%)

Query: 551  AERALTEKNEALRK--ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            A++++ E+   L    A++ K+ F+  +S+E+R+PL  +IG T LL+ +    L+ +Q +
Sbjct: 874  AQQSVLEQQARLEAETANKAKSVFLATMSHEIRTPLNGVIGMTALLEDT---PLSEEQRE 930

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            Y   I +    LL ++NDILD + +++G M+L    I L   L EV    A K  +  + 
Sbjct: 931  YAHTIRSCGESLLGVINDILDFSKIESGKMELEQQPIELRSCLEEVLDMFAGKAGQTGLD 990

Query: 669  IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG--DFIFS 722
            +    D  +    + D  RL QI   ++ NA+ F+ +G  ++   L A R +   +  F+
Sbjct: 991  LIYQIDPLVPPQILGDSLRLRQILINLVGNAVKFTHQGEVMVGVQLVAVRPDQAVELAFT 1050

Query: 723  VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V++ G  IP      +F  F  V ++H  Q  G GLGL I +  I L GG + + S
Sbjct: 1051 VRDTGIGIPGSKIGQLFKAFSQVDSSHSRQYGGTGLGLIISQRLIELMGGVIRVES 1106


>gi|126740969|ref|ZP_01756652.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. SK209-2-6]
 gi|126717895|gb|EBA14614.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. SK209-2-6]
          Length = 753

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 10/212 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  ++G   LL+ ++L   +  Q  Y + I +S+  LL L+NDILDL+
Sbjct: 380 FLANMSHEIRTPMNGVMGMAQLLEETEL---DEDQRLYTDTILSSARTLLALINDILDLS 436

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +DAG ++LN +      L  +  + +  +     + +       L + +  D  R+ QI
Sbjct: 437 KLDAGKIELNPTDFDPGLLFEDTLRLMRVQAEAKELELTYEPQADLPTRLRGDDNRIKQI 496

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              ++ NA+ F+ +G  +I  A+ +  D      FSVK+ G  I ED    +F RF    
Sbjct: 497 LINLIGNAVKFTDEGKVMIALASEELPDGRAMIRFSVKDTGVGIAEDKLSGIFERFTQAD 556

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGLSI    +NL  G +S++S
Sbjct: 557 AAINRRYGGSGLGLSISRHLVNLMEGEISVAS 588


>gi|163848601|ref|YP_001636645.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526536|ref|YP_002571007.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669890|gb|ABY36256.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450415|gb|ACM54681.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 952

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L    +    A+  K++F+ +VS+ELR+PL  ++GF  L+  S+  +L 
Sbjct: 464 DITARKQTEIELRLARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLM--SRDDNLT 521

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q +Y+  I+ +S  LL+L+N++LDLA +++G      + + +  LL +++     +  
Sbjct: 522 ATQHEYLAIINRNSEHLLHLINEVLDLAKIESGRYTYTPNPLDVRRLLADLQALFGPQAE 581

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +++ V  + ++    V+D  ++  I   +L NA+ F+  GS V L+A  D     F 
Sbjct: 582 AKQLQLIVTCEEQVPPMIVSDEAKIRHILINLLGNAIKFTHGGS-VRLRADTDKQQMYFI 640

Query: 723 VKNNGSSIPEDMCKSVFNRFVSN---AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           V++ G  I       +F  F      A+     GVGLGLSI   F  L GG +S+ S+ E
Sbjct: 641 VEDTGVGISPLEQPYLFRPFFQGKQTANASSDTGVGLGLSISYEFARLIGGDLSVYSAGE 700

Query: 780 G-----VTTINCRIP 789
           G       T+  R P
Sbjct: 701 GQGARFTLTLPLRTP 715


>gi|323967240|gb|EGB62664.1| TMAO reductase sytem sensor TorS [Escherichia coli M863]
          Length = 914

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++ +  IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKDRPIRLATAIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLLEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|320158700|ref|YP_004191078.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319934012|gb|ADV88875.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 1370

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 25/254 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  + EK + L  A + K+ F+ ++S+ELR+PL +I+  + L   +K G+L +KQ + 
Sbjct: 650 QAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQIES 709

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHEN 665
            + I++S + LL+L+N+ILDL+ V+AG + L+   + L     DLL  + Q IA    + 
Sbjct: 710 AKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLR-LYQDIA---DDK 765

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV------------ILKA 712
            +  +VI    L  +   D QRL QI   +L+NA  F+ +G+              +L  
Sbjct: 766 GLDFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDK 825

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            R+     FSVK++G  I ++   ++F  F        R+  G GLGLSI +   +L GG
Sbjct: 826 PRE-ALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGG 884

Query: 771 HVSISSSDEGVTTI 784
            + +  S+EG  +I
Sbjct: 885 RIHL-KSEEGKGSI 897


>gi|228945525|ref|ZP_04107875.1| hypothetical protein bthur0007_16850 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814043|gb|EEM60314.1| hypothetical protein bthur0007_16850 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 326

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 135/246 (54%), Gaps = 13/246 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL +   +
Sbjct: 79  TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 137

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L N V+++L+   ++   ++L+ S + +  L+ ++      ++ + 
Sbjct: 138 CEQYVSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 197

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+   +  D +L   + D   ++++F  ++SN++ +   G  +++  ++ + +    VKN
Sbjct: 198 NMSFCIKGDKELHVEI-DVALMVRLFENVISNSIMYGKDGKEILILVSKRDMNVEIEVKN 256

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778
            G  IP++    VF +F    +RG++       G G+GL+I  S   LH G +++ S++ 
Sbjct: 257 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEK 312

Query: 779 EGVTTI 784
           E + TI
Sbjct: 313 ETIFTI 318


>gi|114776707|ref|ZP_01451750.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus
           ferrooxydans PV-1]
 gi|114552793|gb|EAU55224.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus
           ferrooxydans PV-1]
          Length = 701

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 118/236 (50%), Gaps = 3/236 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD    +  L +      KA   K+ F+  +S+ELRSPL  I+GF  L+++      +
Sbjct: 285 DVTDRKHLDVELEDAKSVAEKASLAKSDFLSSMSHELRSPLNAILGFGQLMESESPPPTD 344

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S++    + + A    LL L+N+ILDL+ V++G + L+   ++L++++ E +  +  +  
Sbjct: 345 SQKESIAQILQAGWH-LLTLINEILDLSKVESGKVPLSREPVLLSEVMLECQSMVEPQAQ 403

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFS 722
           E  IR+            ADR R+ QI   +L+NA+ + S+KG   +       G    S
Sbjct: 404 ERGIRMTFPQSDTPYFIHADRTRVKQIMINLLTNAIKYNSAKGEIEVEYTESAPGRLRIS 463

Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +K++G+ +  +  + +F  F       G   G G+GL + +  + L GG +   SS
Sbjct: 464 IKDSGAGLTPEQLEQLFEPFNRLGQENGSEEGTGVGLVVSKRLVELMGGTIGAESS 519


>gi|293372698|ref|ZP_06619080.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632507|gb|EFF51103.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 810

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 114/194 (58%), Gaps = 8/194 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + V D    E+ + E  EA  +A   D++K++F+ ++S+E+R+PL  I+GF++L+  +  
Sbjct: 560 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG- 618

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +++ Y++ I++++ +LL L+NDILDL+ ++AG ++L Y    L++    +  S+ 
Sbjct: 619 ---EEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMK 675

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++   +I +  I+         DR R+ QI +  ++NA+ ++SKGS  +  A +D G +
Sbjct: 676 QRLKNPDIVLTEINPYHCCRVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGGVY 735

Query: 720 IFSVKNNGSSIPED 733
            F VK+ G  I +D
Sbjct: 736 -FYVKDTGIGIADD 748


>gi|229139865|ref|ZP_04268430.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26]
 gi|228643530|gb|EEK99796.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26]
          Length = 448

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
 gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
          Length = 827

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 9/231 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+ IK+ F+  VS+ELR+PL  I+GF +LL + ++  L   Q +++  I  +   L N
Sbjct: 593 KDAERIKSEFIAAVSHELRTPLAAIMGFAELLTSGEI-PLEEGQ-EFLRIIYDNGRRLKN 650

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFV 681
           +V+++LD + ++AG  ++    + L + L  V  S       + +   + I    L    
Sbjct: 651 MVDNLLDSSRLEAGRFEVYKRPVQLEETLRGVADSFTGVAQLSQVEFHREIP--PLPPVE 708

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  R+ Q+   +LSNA  F+ KG  V L+A  +       V++ G  IPE     +F R
Sbjct: 709 ADPDRIGQVMGNLLSNAFKFTPKGGRVTLRAMLEGDSLKIEVEDTGPGIPESERSRLFQR 768

Query: 742 F---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    S   RG   G GLGL I ++ +  HGG + + S     TT +  +P
Sbjct: 769 YGRTQSAVSRGV-SGTGLGLYISKAIVEAHGGRIWVESEVGKGTTFSLTLP 818


>gi|167465146|ref|ZP_02330235.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 602

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 13/254 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V  +V   R +TE++    + D+++  FV +VS+ELR+PL+ + G+++ L     G+ +
Sbjct: 346 QVVGAVAVLRDVTEEH----RMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAGTPD 401

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +  + I   S  +  LV D+LDLA ++AG M + +  + +N L   +++  +    
Sbjct: 402 ERK-ELAQVIHDESLRMGRLVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAK 460

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGD 718
           E  IR I  + +G       D  RL Q+ + +L NA   +    +V L+A          
Sbjct: 461 EREIRLICELPEGNHLVIEGDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEA 520

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  V++ G  IP +    VF RF        RG   G GLGL+IV++ I+ H G V + 
Sbjct: 521 VLIEVEDEGQGIPAEDVPYVFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQ 580

Query: 776 SSDEGVTTINCRIP 789
           S     TT +  +P
Sbjct: 581 SILGKGTTFSIFLP 594


>gi|156740252|ref|YP_001430381.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156231580|gb|ABU56363.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 475

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 10/240 (4%)

Query: 559 NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYIS 614
             ALR A E    +  F+   S+ELR+PLT I    ++ L+ +   S  + Q + +  I 
Sbjct: 232 GRALRPAQEAWERQQRFIASASHELRAPLTLIRASAEVALRDTP--SDTADQYELLGDIL 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A S  +  LV+D+L L  +D+G +KL    + L DLL+ V + +A    +  I I++ + 
Sbjct: 290 AESDHMRRLVDDLLTLTRLDSGQLKLVIEPVNLADLLSRVHRQVARLGEQRGITIELTTV 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G  G   AD +RL Q+    L NA+  +  G T+ L AA        +V + GS I  + 
Sbjct: 350 G--GVVQADAERLQQVLLIALDNALRHTPSGGTITLAAAPTGRMVQITVTDTGSGIAPEH 407

Query: 735 CKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F RF  ++  RG+  G  GLGLSI +  +    G ++++S+    TT++  +P  E
Sbjct: 408 LPHIFERFYRADPARGRENGNAGLGLSIAKGLVEAMHGRITVTSALGAGTTVSVALPQGE 467


>gi|86607381|ref|YP_476144.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
 gi|86555923|gb|ABD00881.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
          Length = 835

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R  +A  ++   L + + +K+ F+  VS+ELR+P+TN+     LLK ++      K+ 
Sbjct: 583 QARLYQASVQQISELERLNRLKDDFLSTVSHELRTPITNMKMAIQLLKMART---PQKRE 639

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QY++ +         L+ND+LDL  ++ G   L+   + L   L  V Q    +   N  
Sbjct: 640 QYLQILEQECEREAELINDLLDLQRLEQGSKPLHLEEVSLAAWLPTVLQPFVQRAEANQQ 699

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
           +++   D K+G  V D+  L ++  ++++NA  ++     + + A R + + +   V N 
Sbjct: 700 QLQWQIDPKVGKVVTDQAALTRVVQELVNNACKYTPPQHRITVTARRLSPEQVQIRVVNE 759

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP    + +F +F  + +    +R G GLGL++V+ ++   GG VSI S  +G T  
Sbjct: 760 GVEIPRSEWERIFEKFYRIPSGDPWKRGGTGLGLALVKQWMQRLGGCVSIESG-QGKTCF 818

Query: 785 NCRIPS 790
              +P 
Sbjct: 819 TLVLPQ 824


>gi|75812816|ref|YP_320433.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75705572|gb|ABA25244.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 720

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+   AE  L +  E  + A+ +K+ F+  +S+ELRSPL  I+G++ LL   KL  
Sbjct: 327 LIDITNHKLAEAELRQSREEAQAANRVKDEFLAVLSHELRSPLNPILGWSSLLLKRKLS- 385

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             +K  + +  I  ++ +   L+ D+LD++ +  G + LN S + L   +    +++   
Sbjct: 386 -EAKIEEGLATIHRNAQLQSELIEDLLDVSRILRGKLNLNCSPVDLTATIMGAMETVQLA 444

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               +I ++   +  +G    D  RL Q+   +LSNA+ F+  G  V +   +       
Sbjct: 445 AQAKSITLQAALEPNIGQVRGDATRLQQVIWNLLSNAVKFTPPGGQVNIHLEQLGNVVQI 504

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-- 777
           +V + G  I  D    +F+ F        R+  G+GLGL+I    + LH G +   S   
Sbjct: 505 TVSDTGKGIAPDFLAYIFDYFRQEDGSITRKFGGLGLGLAIARHLVELHSGTIEAQSPGV 564

Query: 778 DEGVTTINCRIP 789
           D+G T I  R+P
Sbjct: 565 DQGATFI-IRLP 575


>gi|27366816|ref|NP_762343.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27358383|gb|AAO07333.1|AE016809_95 Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 1370

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 25/254 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  + EK + L  A + K+ F+ ++S+ELR+PL +I+  + L   +K G+L +KQ + 
Sbjct: 650 QAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQIES 709

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHEN 665
            + I++S + LL+L+N+ILDL+ V+AG + L+   + L     DLL  + Q IA    + 
Sbjct: 710 AKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLR-LYQDIA---DDK 765

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV------------ILKA 712
            +  +VI    L  +   D QRL QI   +L+NA  F+ +G+              +L  
Sbjct: 766 GLDFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDK 825

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            R+     FSVK++G  I ++   ++F  F        R+  G GLGLSI +   +L GG
Sbjct: 826 PRE-ALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGG 884

Query: 771 HVSISSSDEGVTTI 784
            + +  S+EG  +I
Sbjct: 885 RIHL-KSEEGKGSI 897


>gi|323691897|ref|ZP_08106150.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323504049|gb|EGB19858.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 916

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 10/216 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+E+R+P+  IIG +  +    +G+ + + ++ +  I  SS  LL+L+NDIL
Sbjct: 401 KTDFLSRMSHEIRTPMNAIIGMS-AIAAQAVGN-DEQVAECISKIGISSRFLLSLINDIL 458

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D++ +++G M L    I   D LN +     ++     +  + I+D  L   +  D  +L
Sbjct: 459 DMSRIESGKMLLKNEKIPTEDFLNGLNAICYSQAASKGVDYECIADPTLDDVYTGDAMKL 518

Query: 688 LQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            Q+   ILSNA+ F+ +G     S ++ +  R+     F+V +NG  I ED  + +F  F
Sbjct: 519 QQVLLNILSNAIKFTGEGGKVTFSAMVRRKVRNMAGLRFTVNDNGIGIGEDFLRHMFEPF 578

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              S        G GLGL+I +S +++ GG +++ S
Sbjct: 579 AQESMGTTALYGGTGLGLAISKSIVDMMGGTITVRS 614


>gi|289641928|ref|ZP_06474083.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
           glomerata]
 gi|289508228|gb|EFD29172.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
           glomerata]
          Length = 1215

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 13/234 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E+   L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ K+ +Y   I 
Sbjct: 764 IEERARQLALSSRYKSEFLANMSHELRTPLNSLLILARLLAQNPANNLSPKEVEYANVIH 823

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           ++ + LL L+NDILDL+ V+AG + ++     L+ LL++V+      + E  +R  V ++
Sbjct: 824 SAGSDLLQLINDILDLSKVEAGKIDIHLERFALSALLDDVQGIFCPIIEEKGLRFTVEVA 883

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNGDFIFSVK 724
                + V+D+QRLLQ+   +LSNA+ F+  G         S  +L   R      F+V 
Sbjct: 884 PDVPDALVSDQQRLLQVLRNLLSNAVKFTQLGGVELRIRVVSDRVLDDERRPA-VAFAVI 942

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  I E+    +F  F        RR  G GLGLSI      L GG +   S
Sbjct: 943 DTGIGIAEENLDRLFGAFQQGDGSTSRRFGGTGLGLSIAREVAALLGGVIRAQS 996


>gi|302923768|ref|XP_003053746.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734687|gb|EEU48033.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1371

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 123/218 (56%), Gaps = 12/218 (5%)

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +K+ F+ ++S+E+R+P+T ++G  +LL    L   + +Q +YVE I +S+T LL ++NDI
Sbjct: 797  LKSQFLANMSHEIRTPITGVLGMAELLAGMHL---DEEQQEYVENIQSSATSLLTVINDI 853

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV--ADR 684
            LD + V++G + +      L+ ++ EV + +   +   N+  +  I D      V   D 
Sbjct: 854  LDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSEIGDSIENDLVVIGDP 913

Query: 685  QRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             R+ QI + +L+N++ F+++G    S V  K   ++ +  F+V+++G  I +++ K +F 
Sbjct: 914  GRVRQILTNLLTNSIKFTNQGYVRFSVVAEKETAESIEVRFTVEDSGIGIQDEVRKKLFQ 973

Query: 741  RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F        RR  G GLGL+I ++ ++L  G +S+ S
Sbjct: 974  PFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLES 1011


>gi|254560791|ref|YP_003067886.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4]
 gi|254268069|emb|CAX23941.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4]
          Length = 1937

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 12/237 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ ++ 
Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I+A+ T LL+L+NDILDL+ +++G + L    + L D+   + ++      E ++   
Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFV 1349

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721
            + +  G   S   D +RL Q+   +LSNA  F+ KGS V LK     G            
Sbjct: 1350 IEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQWIAM 1408

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            SV + G  I ED  + +F  F        R+  G GLGL+I      L GG + + S
Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465


>gi|160878669|ref|YP_001557637.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           phytofermentans ISDg]
 gi|160427335|gb|ABX40898.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           phytofermentans ISDg]
          Length = 490

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 14/230 (6%)

Query: 557 EKN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYI 613
           EKN  E L++A  +KN F+ ++++ELR+P+  + G  D+L    LG+ L   Q + V  I
Sbjct: 128 EKNVKEELKEATGVKNEFLANITHELRTPVNGMKGLADVL----LGTELTQNQRENVNII 183

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
                 + N++N ILD + + AG M+L    I +++ L         K++E  ++++V I
Sbjct: 184 RRCCDNMTNIINGILDFSKITAGKMQLENKVIDISNFLKNTLSYHIPKLNEKGLKLQVNI 243

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGS 728
            D      + D  RL QI S ++SNA+ F+S G  VI         D  +  F V ++G 
Sbjct: 244 GDNVPKKILGDELRLEQILSNLISNAIKFTSVGQLVIEVINTDQKEDEVELFFMVIDSGI 303

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I ++    +F  F        RR  G GLGL+I +S + L GG + +SS
Sbjct: 304 GISKEDMDKLFQSFSQVDGSITRRYGGTGLGLAISKSLVELMGGTIHVSS 353


>gi|153939122|ref|YP_001389721.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152935018|gb|ABS40516.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295317809|gb|ADF98186.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 464

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D++KN F+  VS+ELR+PLT+I G+   L ++++     K    ++ I   S  L  +
Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G MKLN   I + ++++ V++ +    + N I  K     KL +   D
Sbjct: 297 VEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R R+ Q+   +L NA  F+ +G  V L    +       VK+ G  I ++    V  +F 
Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G+ +  G+GLSI +  I LH G + I S +   TTI+ ++P
Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|119484858|ref|ZP_01619340.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457676|gb|EAW38800.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 650

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 19/268 (7%)

Query: 529 SIIPLPNAQ-----TMLTFVNVTDSVR--AER-ALTEKNEALRKADE----IKNSFVQHV 576
           S+ PL NA+      ++T V++T   R  AER  L ++ ++ R   E    IK+ F+  +
Sbjct: 228 SLAPLHNAEGNVCGVVMTAVDITTRKRIEAERFNLLQREQSARAEAEAANRIKDEFLAVL 287

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I+G+  L++  KL     +Q+  +E I  +++I   L+ D+LD++ +  G
Sbjct: 288 SHELRTPLNSILGWITLIQRGKLNQTTLEQA--LEVIERNASIQTQLIEDLLDISRISRG 345

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            + LN +++ L +L+     ++       +I I++I D ++     D  RL Q+F  + S
Sbjct: 346 QLNLNINSVNLVELIQTTVDTVRPAAEAKSIAIELILDHRINIISGDGNRLQQVFWNLFS 405

Query: 697 NAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRR 752
           NA+ F+ K  +V +K  +    +    V ++G  I  +    VF  F    ++  R Q  
Sbjct: 406 NAIKFTPKEGSVTIKLNKVEDSYAQIKVIDSGIGIEPNFLPYVFEYFRQADASTTRSQ-G 464

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEG 780
           G+GLGL+I    + LHGG + + S  +G
Sbjct: 465 GLGLGLAISRHLVELHGGTIDVESEGKG 492


>gi|91793039|ref|YP_562690.1| CHASE [Shewanella denitrificans OS217]
 gi|91715041|gb|ABE54967.1| CHASE [Shewanella denitrificans OS217]
          Length = 1659

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 20/243 (8%)

Query: 553  RALTEKNE---ALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            R +TE+ E    LR+A E        K++F+ ++S+E+R+P+  I+G   L++ +    +
Sbjct: 874  RDITEQRELEHTLRRAKEEADATSAAKSAFLANMSHEIRTPMNAILGMLQLVQHT---DM 930

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              +Q  YV     ++  LL L+NDILD + +DAG + ++     L +++ E+   +A  M
Sbjct: 931  TPQQQDYVSKTEVAAQSLLGLLNDILDFSKIDAGKLNVDLHPCSLEEIMRELAVLLAANM 990

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
               +I +    D  +   V AD+QRL Q+   +  NA+ F+++G  ++    LK +    
Sbjct: 991  RRKHIEVLFDLDPSIPELVLADKQRLQQVLLNLAGNAIKFTAQGHVILQVFNLKLSSHKV 1050

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                SV + G  I       +F  F+       RR  G GLGL+I +  + L G  + + 
Sbjct: 1051 RLRISVADTGIGINVSQLDKIFQGFMQAESSTSRRFGGTGLGLAITKRLVELMGAELEVE 1110

Query: 776  SSD 778
            S +
Sbjct: 1111 SQE 1113


>gi|82702619|ref|YP_412185.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410684|gb|ABB74793.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 835

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 135/255 (52%), Gaps = 17/255 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T++V AE AL E       AD  K+ F+  +++ELR+PL  I     L+     G+ 
Sbjct: 457 IDITEAVAAETALLE-------ADRRKDEFLATLAHELRNPLAPIASALTLIAGPD-GA- 507

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            ++  + +  I+     ++ LV+D+L+++ + +G ++L      L  +L    ++   ++
Sbjct: 508 -AEIPRLLPVINRQVNYMVRLVDDLLEISRITSGKVELRQKPTDLAIVLRNAAEASMEQI 566

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            E  + + + I+D  L  +  D  RL QIF+ +L+NA+ ++ +G  + L A +++   + 
Sbjct: 567 REKELELSISITDTPLIVY-GDTVRLEQIFANLLNNAVRYTGRGGKIWLTARQEDHKAVV 625

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSS-- 777
           SVK+NG  I   M   +F+ F      G   + G+G+GL++V+  + +HGG V  SS   
Sbjct: 626 SVKDNGIGILPGMLPRLFDMFAQERRSGMGTQEGLGIGLNLVDRLVQMHGGSVEASSEGK 685

Query: 778 DEGVTTINCRIPSKE 792
           D+G +    R+P  E
Sbjct: 686 DKG-SEFTVRLPLSE 699


>gi|298481962|ref|ZP_07000151.1| RteA, two-component system histidine kinase, with response
           regulator receiver domain protein [Bacteroides sp. D22]
 gi|295087318|emb|CBK68841.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Response regulator
           receiver domain. [Bacteroides xylanisolvens XB1A]
 gi|298271826|gb|EFI13398.1| RteA, two-component system histidine kinase, with response
           regulator receiver domain protein [Bacteroides sp. D22]
          Length = 819

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 16/207 (7%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVD 634
           ++++LR+PLT I G+ +LL     G ++ K+  +Y  +I  SS  ++ LVN +++   +D
Sbjct: 347 IAHDLRAPLTAIKGYAELLP----GEVDEKRKDEYAVHIVRSSDYMIGLVNSLIEFYLLD 402

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-----DGKLGSFVADRQRLLQ 689
           AG  K+N +      L +E+      K+H  ++R + ++     +G       DR R++Q
Sbjct: 403 AGKGKMNVTVFRPLSLFDEI-----VKLHTPSVRKEGLTLCTDFEGLDTVVEGDRPRIMQ 457

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           I + +LSNA+ F+ KG  + L+AA   G+  FSV++ G  + ED  K +F  F    +  
Sbjct: 458 IANNLLSNAIKFTRKGK-ISLQAAYGQGELRFSVQDTGPGMTEDEQKRIFRAFERLDNAR 516

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776
              G GLGL+IV     L GG +++ S
Sbjct: 517 YLPGFGLGLAIVSRLTELLGGRITVES 543


>gi|294338507|emb|CAZ86835.1| Sensor protein kdpD [Thiomonas sp. 3As]
          Length = 914

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 120/234 (51%), Gaps = 8/234 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS----KLGSLNSKQSQYVEYISASSTI 619
           +A+ ++NS +  +S++LR+PLT ++G  ++L T       G   +  SQ +  +  S   
Sbjct: 665 QAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLVAHPPGDAATLHSQALSLLQQSRR- 723

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLG 678
           L  +V+D+LD+A + +G + L      + +L+    +++ A  + ++ ++I + +D  L 
Sbjct: 724 LARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQIDLPADFPL- 782

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD   L ++   +L NA+ F+  G+ + ++A     +   +V + G  +P    ++V
Sbjct: 783 -VRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPAGRERAV 841

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F  F          GVGLGL+I  + +  HGG V+ +++ EG    N R+P  E
Sbjct: 842 FETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLPLHE 895


>gi|172036100|ref|YP_001802601.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697554|gb|ACB50535.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 850

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 127/239 (53%), Gaps = 14/239 (5%)

Query: 551 AERA-LTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           AER  L E+ +A R    +A+ IK+ F+  +S+ELRSPL  I+G++ LL+T +   + +K
Sbjct: 462 AERQQLLEREQAAREDAEQANRIKDEFLAILSHELRSPLNPILGWSTLLQTKQFDPITTK 521

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           +   +  I  ++ +   L++D+LD+A +  G +KL  +T+ L  ++    + + T     
Sbjct: 522 KG--LSTIERNAKLQTQLIDDLLDIARILRGKLKLEETTVNLVTVVEGAMEVVRTTAEAK 579

Query: 666 NI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +I  + +VI+   +     D  RL Q+   +LSNA+ F+ +G  V ++   +      +V
Sbjct: 580 SIALQFEVIT---VCQVRGDEGRLEQVVWNLLSNAIKFTPEGGQVGVRLEVNGEQACLTV 636

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           K+ G  I  D    +F  F        R+  G+GLGL+IV+  ++ H G ++  SS EG
Sbjct: 637 KDTGKGISSDFLPYLFQSFRQEDVSVTRQYGGLGLGLAIVKYIVDAHNGSITADSSGEG 695


>gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 988

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 11/236 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + R    L  + EAL +A   K+ F+  +S+E+R+P+  IIG T L    +     +  +
Sbjct: 602 AARNAELLKSQQEAL-EATRAKSEFLATMSHEIRTPMNGIIGLTYLALQREC---PAAIA 657

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  I  ++  LL ++NDILD + V++G M        L+++L+   Q     + E  +
Sbjct: 658 DYLAKIDVTAKTLLRIINDILDFSKVESGKMDFEEIPFTLSEVLDNTLQMFTHAVREKGL 717

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FS 722
            ++  + +G   S V D  RL QI   ++ NAM F+ +GS T+ ++    +   +   F+
Sbjct: 718 SLRFDVGEGVPQSLVGDPTRLGQILLNLVGNAMKFTHEGSVTLFVRCVETDQQTVTLGFA 777

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IP D   S+F  F+       RR  G GLGL+I    +   GG + + S
Sbjct: 778 VRDTGIGIPADKLPSLFQPFIQADMSVSRRYGGTGLGLAIARVLVQHMGGTIHVRS 833


>gi|294672860|ref|YP_003573476.1| sensory box histidine kinase [Prevotella ruminicola 23]
 gi|294473702|gb|ADE83091.1| sensory box histidine kinase [Prevotella ruminicola 23]
          Length = 660

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 133/255 (52%), Gaps = 13/255 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NVTD +  +  L E+ E   +A   K++F+  +S+E+R+PL  I+GF+D+L T    S  
Sbjct: 409 NVTDLIYKQEQLKEETERANQAGMRKSTFLASMSHEIRTPLNAIVGFSDVLATM---STP 465

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++   ++ IS +  +LL LVNDIL L+++++G + +  +        N V  S+A ++ 
Sbjct: 466 EEREGIIQVISNNCDMLLRLVNDILALSSLESGDIIVKPTRTDFAKCFNSVATSLAQRI- 524

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718
             N +I+ + +    +++   D  R  QI +  ++NA+ ++ +G   I    +  +D   
Sbjct: 525 -KNPKIEFLVESPYPTYITTIDGGRTQQIVTNFVTNAIKYTQQGHIKIGYEQQMRQDKEG 583

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
                ++ G+ IP++    VF+RFV      Q  G GLGLSI +   +  GG + ++S  
Sbjct: 584 LYIYCEDTGAGIPKEHQGKVFDRFVKLNDFVQ--GTGLGLSICKLIADNSGGEIGVTSEG 641

Query: 779 EGV-TTINCRIPSKE 792
           +   +T    IP K+
Sbjct: 642 KDCGSTFWVWIPCKQ 656


>gi|237727119|ref|ZP_04557600.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1467

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G    V +  + D+      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  I+LH G +   S +
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPE 1151


>gi|126738532|ref|ZP_01754237.1| hypothetical protein RSK20926_08707 [Roseobacter sp. SK209-2-6]
 gi|126720331|gb|EBA17037.1| hypothetical protein RSK20926_08707 [Roseobacter sp. SK209-2-6]
          Length = 515

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 167/381 (43%), Gaps = 18/381 (4%)

Query: 171 LDGIYS-ELAETTL--KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +DGI   +L  +TL  + K L   ++  +       + VW + + G + W+N++Y    +
Sbjct: 123 IDGITRVQLRRSTLEEQNKSLDQELTTLRAAVHQAPYPVWLQSEEGLVTWSNLAYD---D 179

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
               +  +    S  +F     +  +SS   E+    ++   E      Y I       G
Sbjct: 180 LSNKLRGRNADFSVPMFSN--LQEPMSSGKPERI---SIPLPESDKRLWYNISTTETEAG 234

Query: 288 EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               A+DV+     EI   + +    +    L++ +AIFD+NR L   N   ++L  +  
Sbjct: 235 WLCHAVDVNAVVDAEIAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALPA 294

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLH 401
           +FL++ P+     + LR    +PE  N+ +W+  I  + +++    +++TW LP+G    
Sbjct: 295 SFLSSRPTLLTFFDRLRDQRMMPEPKNYSSWRHQIEDLLEAAAEGRYQETWSLPSGSVYS 354

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           V    +P G   ++FE++T +V L  ++ + ++V    +D + E +AVF  +G +  SN 
Sbjct: 355 VSGRPHPDGAIAFLFEDITAEVTLTRQFRSELEVGQSILDQMDEAIAVFTNEGTMSFSNT 414

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            +  LWK + +       I + A       N +  W      +   ++ R      ++L 
Sbjct: 415 TYHELWKMDPDTSFAKVSIMDAARVWQDTCNATSVWGEIRDFVAG-NEVRTPWWAHVQLR 473

Query: 522 SDSVLEYSIIPLPNAQTMLTF 542
             + L   +  L N  T+++F
Sbjct: 474 DGTALVCKVSALQNGATLVSF 494


>gi|119476572|ref|XP_001259199.1| two-component sensor protein histidine protein kinase (dhkk, dhkj)
            [Neosartorya fischeri NRRL 181]
 gi|119407353|gb|EAW17302.1| two-component sensor protein histidine protein kinase (dhkk, dhkj)
            [Neosartorya fischeri NRRL 181]
          Length = 2285

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 14/227 (6%)

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +SF+ ++S+ELR+PL  +IG ++LL  S +      Q +  E I  S+ +LL ++NDILD
Sbjct: 1886 SSFLANISHELRTPLNGVIGNSELLLNSPV---PEAQLEMAESIRMSANLLLAVINDILD 1942

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--KMHENNIRIKVISDGKLGS---FVADR 684
             + V+A  M+L+     +  ++ EV +SI T  K    +  + ++ D +L        D 
Sbjct: 1943 FSKVEANKMQLHVVPFDVERMVMEVVRSIPTDSKNGPRSSNVHIVHDIQLQETRHVCGDP 2002

Query: 685  QRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFN 740
             RL QI   +L N++ F+ KG+ T+  +A  +  D +   F V + G  IP  +   +F 
Sbjct: 2003 VRLRQILGNLLGNSLKFTEKGTITIGARAENETEDSVRLSFWVADTGIGIPSALIPRLFR 2062

Query: 741  RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             F        RR  G GLGLSI +  + L GG + + S++   TT++
Sbjct: 2063 PFTQADASTARRFGGTGLGLSICKLLVELMGGTIDLKSTEHVGTTVS 2109


>gi|319787299|ref|YP_004146774.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465811|gb|ADV27543.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 736

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LT   E  ++A E K+ F+ ++S+E R+PL  + G T+LL T+    L+S+Q + +  
Sbjct: 175 RQLTRATEEAQRASEAKSRFLANMSHEFRTPLNGLAGMTELLSTTP---LDSEQRECLRT 231

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I AS+  L+ LV D+LD++ ++AG +KL+       + ++ +   +  +  +  +   V+
Sbjct: 232 IQASTRSLMGLVEDVLDISAIEAGKVKLSPENFSPREAVDSIGLILQPQARQKQLEYLVV 291

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI---FSVKN 725
            +  + S V  D   L Q+   ++ NA+ F+  G     V L  A D G  +   F+V +
Sbjct: 292 VEDAVPSLVHGDAVHLRQVLLNLVGNAVKFTDAGRVRVDVSLAGASD-GQVVRLRFAVSD 350

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
            G  IPE M + +F  F   A  G  R   G GLG +I    +   GG + 
Sbjct: 351 TGIGIPESMRERLFEAF-EQADAGLARRYGGTGLGTTIARGLVEAMGGRIG 400


>gi|218529950|ref|YP_002420766.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum
            CM4]
 gi|218522253|gb|ACK82838.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum
            CM4]
          Length = 1937

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 12/237 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ ++ 
Sbjct: 1230 AKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQREFA 1289

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I+A+ T LL+L+NDILDL+ +++G + L    + L D+   + ++      E ++   
Sbjct: 1290 KTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERHLAFV 1349

Query: 671  VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIF 721
            +  D  L  S   D +RL Q+   +LSNA  F+ KGS V LK     G            
Sbjct: 1350 IEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQWIAM 1408

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            SV + G  I ED  + +F  F        R+  G GLGL+I      L GG + + S
Sbjct: 1409 SVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVES 1465


>gi|295106963|emb|CBL04506.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 748

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 15/236 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAERA  E     ++A   K  F+  +S+E+R+P+  I+G T +   S +G  + K    
Sbjct: 342 RAERAFAEA----QQASLAKTEFLSRMSHEIRTPMNGIMGMTAIALES-IGD-DGKVRTC 395

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E ++ SS  LL+L+NDILD++ +++G +++      L+  +  +     T+  E N+  
Sbjct: 396 LEKVTLSSEHLLSLINDILDMSKIESGKVEIKNEPFDLSTFIGSLAAVFRTQASERNVAF 455

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD----FIFS 722
             + +G++ G  V D  RL Q+   ++ NA  F+ +G +V L+  R  D  D      F+
Sbjct: 456 DTVVEGEVPGHVVGDPLRLNQVVYNLMGNAFKFTPEGGSVTLRIERLADAEDGCVWLRFA 515

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           V + G  I  +    +F  F        R+  G GLGL+I + F+ L GG + ++S
Sbjct: 516 VDDTGCGIEPEHLDKIFASFEQGDASVARKHGGTGLGLAITKRFVELMGGRIRVAS 571


>gi|229090891|ref|ZP_04222119.1| hypothetical protein bcere0021_17120 [Bacillus cereus Rock3-42]
 gi|228692500|gb|EEL46231.1| hypothetical protein bcere0021_17120 [Bacillus cereus Rock3-42]
          Length = 288

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 132/239 (55%), Gaps = 13/239 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QYV  
Sbjct: 48  KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQYVSI 106

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   S  L N V+D+L+   ++   ++L+ S + +  L+ ++      ++ + ++   + 
Sbjct: 107 LKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCIK 166

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  IP+
Sbjct: 167 GDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKNFGQCIPD 225

Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
           +    VF +F    +RG++       G G+GL+I  S   LH G +++ S++ E V TI
Sbjct: 226 ENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVFTI 280


>gi|160896955|ref|YP_001562537.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160362539|gb|ABX34152.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1303

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 124/255 (48%), Gaps = 23/255 (9%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T    AE+AL +  EA   A+  K+ F+  +S+E+R+P+  +IG T L++ +   +
Sbjct: 499 MLDITREREAEQALQQAKEAAEAAERAKSDFLAIMSHEIRTPMNTVIGMTRLVQQT---A 555

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L S+Q  Y+E +  S++ LL ++NDILD + ++AG++ L      L+D+L  V  S A +
Sbjct: 556 LTSRQRGYLEKVERSASALLAVINDILDFSKIEAGMLVLEEVDFALDDVLETVTASTALR 615

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------- 709
             E  + +    D +L   +  D  RL Q+ + ++ NA+ F+  G  VI           
Sbjct: 616 AEEKGLEVVYALDPQLPPRLRGDPMRLGQVLTNLVGNAVKFTEHGEVVISLHLAPPPVDA 675

Query: 710 ------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
                    A        SV++ G  +     + +F  F     +  RR  G GLGL+I 
Sbjct: 676 PADADADTTAAPLHHLCVSVRDTGIGLDASRAERLFQPFTQADIQTTRRHGGTGLGLAIC 735

Query: 762 ESFINLHGGHVSISS 776
              + L GG + + S
Sbjct: 736 HRLVQLMGGEIGVRS 750


>gi|85711698|ref|ZP_01042755.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145]
 gi|85694558|gb|EAQ32499.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145]
          Length = 655

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 130/252 (51%), Gaps = 23/252 (9%)

Query: 555 LTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +TE+ +A    R+A   KN F+ ++S+E+R+PL  I+G   +L+ +   +L++ Q Q + 
Sbjct: 265 VTEQKQAEINARRAASAKNVFLANMSHEVRTPLHGILGLVSVLENT---ALDTHQHQLLM 321

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S   LL ++ND+LDL   + G +KLN   + L  +L  ++      + E  ++  +
Sbjct: 322 TVKESGDHLLQMLNDLLDLTRSEEGQLKLNKDVLELARILQHIESMYRAPIEEKGVKFII 381

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGDFI 720
                L   + +DR RL+QI + +L+NA+ F+ +G+ ++              +  G+ +
Sbjct: 382 HHSQVLPERIFSDRARLIQILTNLLNNAVKFTEQGTIMLSIDWSVDPATTTQTQAQGELL 441

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSS 777
             V++ G+ I +   + ++  F    H+G   ++ G GLGL+IV + + L  G + + S 
Sbjct: 442 IKVRDTGAGIRD--TQRIWQLF-EQEHQGLSKKQSGSGLGLAIVRNLVQLLDGEIEVDSE 498

Query: 778 DEGVTTINCRIP 789
               T  + R+P
Sbjct: 499 PNRGTCFSLRLP 510


>gi|319900473|ref|YP_004160201.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319415504|gb|ADV42615.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 701

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 18/235 (7%)

Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L +KNE L       + A+ +K+ F+Q++S+E+R+PL +I+GF+ L+   ++     +Q 
Sbjct: 460 LRKKNEELAVARDEAQSANRMKSMFIQNMSHEIRTPLNSIVGFSQLIANPEMELEPEEQQ 519

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--N 665
           +Y E I ++S +L  LVND+L LA +++G      +    NDL    +QS+AT  H    
Sbjct: 520 EYSELIVSNSELLTTLVNDLLSLAELESGKYVTKMAPQRCNDL---CRQSLATVTHRKPQ 576

Query: 666 NIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSV 723
           ++R+   SD         D QR+ Q+   +L+NA   +  G   +    +   G   FSV
Sbjct: 577 DVRLYYTSDVPDDYEITTDGQRVRQVLINLLTNAEKHTEHGEIHLHCSLSETPGSATFSV 636

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + G+ IP +  + +F RF   NA     +G GLGLSI     +  G  V + +S
Sbjct: 637 TDTGTGIPAEQAEHIFERFEKLNAF---DQGFGLGLSICRLIADYLGAVVKLDTS 688


>gi|317056280|ref|YP_004104747.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315448549|gb|ADU22113.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 808

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 124/257 (48%), Gaps = 11/257 (4%)

Query: 519 ELLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           EL  ++  E  I PL   ++      N++D+V      ++  E   K++ +K   V +VS
Sbjct: 535 ELNRNTPFEVEISPLSELSRPSDMLKNISDTV------SDAVEEQIKSERMKIELVANVS 588

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           ++L++PLT+II + DLLK ++L   + +   YV+ +   S  L ++V D+  LA   +GI
Sbjct: 589 HDLKTPLTSIISYIDLLKKTEL---DDEAMGYVQILDKKSQKLKSIVADVFSLAKATSGI 645

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             +N   +    L N+       K++E+   +K+         + D  +L ++   I+ N
Sbjct: 646 -DVNMEELDFVRLFNQCLADADDKINESGKVVKLSVTADTAPVMGDGNKLYRVLQNIIDN 704

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A+ +S  GS + ++  R   D + SVKN  S   E     +  RFV         G GLG
Sbjct: 705 ALKYSMDGSRIFMELKRTEDDVVLSVKNTSSYPIEFTADEITERFVRGDKSRTDGGSGLG 764

Query: 758 LSIVESFINLHGGHVSI 774
           LSI +SF    GGH  I
Sbjct: 765 LSIAKSFTEACGGHFDI 781


>gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1467

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G    V +  + D+      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            RF    NA     +G G+GL++ +  I+LH G +  + S EG
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEI-YAESPEG 1152


>gi|222096717|ref|YP_002530774.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221240775|gb|ACM13485.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 458

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|229179502|ref|ZP_04306855.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W]
 gi|228604003|gb|EEK61471.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W]
          Length = 448

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447


>gi|225405399|ref|ZP_03760588.1| hypothetical protein CLOSTASPAR_04619 [Clostridium asparagiforme
           DSM 15981]
 gi|225043101|gb|EEG53347.1| hypothetical protein CLOSTASPAR_04619 [Clostridium asparagiforme
           DSM 15981]
          Length = 533

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E+  A  +  +++   ++ +S++LR+PLT+I G   +L          ++ Q  + I 
Sbjct: 291 IREEEAANARTQQLRADLLRSISHDLRTPLTSISGNAGILMNDTGHLAEERKKQVCQDIY 350

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L+NLV ++L +  ++ G M+LN    +L +++ E  + I+ K  E+ + +    D
Sbjct: 351 DDSMWLINLVENLLSITRMEGGTMQLNMEGELLEEVIGEAMRHISRKASEHTLSVTQEGD 410

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D + ++Q+   ++ NA+ ++  GS + ++A R     +  + ++G  IP+  
Sbjct: 411 FLLARM--DSRLIIQVIINLVDNAIKYTPPGSHIQVRAFRRGDLAVVEIADDGPGIPDSA 468

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            + VF+ F   SN     +RG+GLGL++  S +  HGG +++S
Sbjct: 469 KERVFDMFYTASNKPVDSKRGMGLGLALCRSIVTAHGGQITVS 511


>gi|254522090|ref|ZP_05134145.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219719681|gb|EED38206.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1168

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 12/239 (5%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+ ++ +E+R+P+T ++G ++LL  S L   + +Q  Y + I  + 
Sbjct: 792  KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPL---DPQQRGYTQSIRHAG 848

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL+LVND LDLA +++G ++L      L+ LL ++   +     +  +R  + +    
Sbjct: 849  EHLLHLVNDALDLARIESGRLELQQKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLPP 908

Query: 678  G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPED 733
            G     D  R+ QI   +LSNA+ F+S+G+  +   AR +G+     F V++ G  I ++
Sbjct: 909  GLQATGDAMRVRQILLNLLSNAVKFTSRGTITL--HARSDGELRALHFEVRDTGPGISQE 966

Query: 734  MCKSVFNRF-VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F RF  ++  R   Q  G GLGL+I         G + + S     T     +P
Sbjct: 967  QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLP 1025


>gi|254423212|ref|ZP_05036930.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190701|gb|EDX85665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 852

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 14/235 (5%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL------NSKQSQYVEYIS 614
           A   A++ K+ F+ ++S+ELR+PL  I+GFT L+++    +       +S  + Y+  IS
Sbjct: 355 AANTANKAKSEFLANMSHELRTPLNAILGFTQLMQSDHANTTYFQKERSSDYNNYLGIIS 414

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+ND+L ++ ++AG + L+ +   L  LL  +++ ++ +     I + V  D
Sbjct: 415 RSGGHLLTLINDVLSMSKIEAGRLTLDPTCFDLRYLLRTLEEMLSMRAEAKAITLSVQVD 474

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSS 729
             +  FV  D  +L Q+   ++ NA+ F+  GS V L  + +N   +    FS+ + G  
Sbjct: 475 QAVPQFVKTDEAKLRQVLVNLVGNAIKFTPTGS-VTLSVSCENIPSLYRLNFSIVDTGVG 533

Query: 730 IPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           I  +    +F+ F   +  R   +G GLGL+I + F+ + GG +++ S  D+G T
Sbjct: 534 ISAEDLSCLFDPFFQASRTRTAHQGTGLGLAISQRFVQMMGGEINVESIVDQGST 588


>gi|172036328|ref|YP_001802829.1| sensory transduction histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697782|gb|ACB50763.1| probable sensory transduction histidine kinase [Cyanothece sp. ATCC
            51142]
          Length = 1317

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 17/243 (6%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-------SKLGSLNSKQSQYVEYISA 615
            R+ + +K +F+  VS+ELR+PLT+I+GF+ L++         ++   + K  + VE I  
Sbjct: 1071 REMERMKRNFLSMVSHELRTPLTSIVGFSSLIRDKLHAVVFPQIQEKDKKVDKAVERIKQ 1130

Query: 616  SSTI-------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I       L  LVND LD+  +++G + L+   +  + +L     S A    ++++ 
Sbjct: 1131 NLDIVVFEAERLTKLVNDFLDMTKIESGKITLSLFPVKPSTVLTWAIASTAPLFEDSSVE 1190

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +      +L + + D  RL+Q+F  ++SN   F+  GS V      D+ + + S+ + G 
Sbjct: 1191 LIEDFPEELPTILGDEDRLIQVFVNLISNGFKFTETGS-VTCHGEVDHDNLLISITDTGI 1249

Query: 729  SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I E+    VF  F  V N    + +G GLGLSI +  I  HGG +  +S  +  +T   
Sbjct: 1250 GIAENDYSKVFEPFQQVGNILTNKPKGTGLGLSISKQIIEQHGGKIWFTSERQKGSTFFV 1309

Query: 787  RIP 789
             +P
Sbjct: 1310 SLP 1312


>gi|149280480|ref|ZP_01886599.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
 gi|149228792|gb|EDM34192.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
          Length = 584

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 120/217 (55%), Gaps = 3/217 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ DE K +F+  VS+EL++P+++I     LL   ++GS+N++Q + V++I      LL 
Sbjct: 354 KELDEAKTNFIATVSHELKTPISSIKMSLKLLDDERVGSMNTEQKELVQHIKEDCGRLLK 413

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           + +++LDL+ V+ G ++LN+       +      ++  +  + +I +++IS   L     
Sbjct: 414 ITSELLDLSQVETGNLQLNFVKSDPRKIAIYAMDAVRFQAEQKSIELELISRNDLPKVNV 473

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++   +    LSNA+ +SS  S V+++   ++GD I FSV++ G  I     K +F+R
Sbjct: 474 DTEKTAWVLVNFLSNALRYSSAKSKVVIQIV-ESGDHIEFSVRDFGKGIDMQYQKRLFDR 532

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
           +      G  + G GLGL+I + FI   GG + + S+
Sbjct: 533 YFQVPTDGNNKSGSGLGLAISKDFIEAEGGKIWVESA 569


>gi|94313181|ref|YP_586390.1| PAS/PAC sensor, hybrid histidine kinase [Cupriavidus metallidurans
            CH34]
 gi|93357033|gb|ABF11121.1| PAS/PAC sensor, hybrid histidine kinase [Cupriavidus metallidurans
            CH34]
          Length = 1418

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 130/256 (50%), Gaps = 12/256 (4%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +V++T+      AL +  +A   A   K+SF+  +S+E+R+P+  I+G  +LL+ +    
Sbjct: 771  YVDLTEERERANALAQAKDAAEAASRAKDSFLAMMSHEIRTPMNGILGLIELLQRTP--- 827

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L ++Q + V     S   L  +++DILD A ++AG + +  + + L +L + V  S+  +
Sbjct: 828  LTAEQQRMVALAGESGQALGRILDDILDYAKLEAGRLAILRAPVDLRELFDGVLGSLLPQ 887

Query: 662  MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
              +  +R+K     ++ + V AD  RL QI   +L NA+ F+  GS V+L+A  + G   
Sbjct: 888  AFQKGLRLKQRVSAEVAAIVQADGIRLRQILFNLLGNAIKFTDHGS-VMLRATMEPGATG 946

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                +  V++ G  I       +F  F+ +     RR  G GLGL+IV +   L  G ++
Sbjct: 947  LPMLVVVVEDTGIGIARTDLARLFAPFMQSERSTARRFGGTGLGLTIVRTLAELMDGEIT 1006

Query: 774  ISSSDEGVTTINCRIP 789
            + S     TT   R+P
Sbjct: 1007 LKSEAGVGTTAVLRVP 1022


>gi|163939391|ref|YP_001644275.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|229132383|ref|ZP_04261237.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
 gi|229166419|ref|ZP_04294175.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|163861588|gb|ABY42647.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|228616993|gb|EEK74062.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|228651089|gb|EEL07070.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
          Length = 591

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 176/355 (49%), Gaps = 35/355 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV     +G + + NP    F  +W+ E+        +  I    S         +L
Sbjct: 264 MADGVVTLNQEGEVVVINPPAEHFLQVWQEEK-------EVELIKKLPSELV------EL 310

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++ S  ++++ ++  L+  +  VL   + PL N QT      +  +V   R +TE+ 
Sbjct: 311 FHLVVES--EQQQVVEINLQKGNYVVL---MTPLYN-QT-----KIRGAVAVLRDMTEE- 358

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ ++++  F+ +VS+ELR+P+  + G+++ +    +     + +++V+ I   S  
Sbjct: 359 ---RRLEKMRQDFIANVSHELRTPMVMLQGYSEAI-LDDIVQTKEEINEFVQIIYDESVR 414

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +++ V     +  
Sbjct: 415 LGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQSPIEQ 474

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  D  R+ Q+ + ++ NA+  ++ G  V L     N    F V+++G+ IPE+    +F
Sbjct: 475 YPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDIPFLF 534

Query: 740 NRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +RF        RG++ G GLGL+I ++ +  H G + +SS     TT +  +P++
Sbjct: 535 DRFYKADKARTRGKKIGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTTFSVYLPNR 589


>gi|94502132|ref|ZP_01308633.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65]
 gi|94425734|gb|EAT10741.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65]
          Length = 892

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 130/227 (57%), Gaps = 11/227 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL  A + K+ F+ ++S+E+R+PL  I+GFT LL  ++L   N +Q +Y++ I +SS
Sbjct: 265 RREAL-DASQTKSDFLANMSHEIRTPLNGILGFTRLLSGTRL---NKRQLEYLQTIESSS 320

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGK 676
           T LL+++NDILD + ++AG + L+ + + ++D++++V   +A + H+ +I +  ++    
Sbjct: 321 TSLLSIINDILDFSKIEAGKLVLDQAPVNVSDIIDDVITMLAPEAHKKHIELAALVYQDV 380

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSIPE 732
               + D  RL QI + +++NA+ F+  GS +  ++   ++  D    FSV++ G  + +
Sbjct: 381 PQEIMGDSLRLKQILTNLINNAIKFTHTGSVIVRVMLEEQEGSDVTLKFSVQDTGIGMTD 440

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           D  K++F  F        RR  G GLGL I    +    G +   S+
Sbjct: 441 DQQKNLFKAFSQGDESTSRRYGGTGLGLVISRYLVEHMQGELGFDST 487


>gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
 gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
          Length = 822

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 123/249 (49%), Gaps = 12/249 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+A  E+  AL  A   K+ F+ ++S+E+R+PL  I+GF  LL+T+    LN +Q +++ 
Sbjct: 303 EKADKERRSALDTA-RAKDLFLANMSHEIRTPLNGIVGFIQLLETT---PLNEEQREFIR 358

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  SS  LLN+VNDILD + ++AG ++L        D      ++ A K     I   V
Sbjct: 359 VVQESSQNLLNIVNDILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALHKGIDFAV 418

Query: 672 ISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI--FSVKN 725
             D  L G  + D  R+ Q+   +++NA+ F+ +G  V +   K     G+    F V +
Sbjct: 419 YVDPALPGRILGDPTRISQVLVNLVNNAIKFTERGGEVSVFCQKMGELEGNVFVKFVVSD 478

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  D  + +F+ F        R+  G GLGLSI    +   GG +++ S     ++
Sbjct: 479 TGIGIALDQQEKIFDLFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLAVESEPGKGSS 538

Query: 784 INCRIPSKE 792
               +P K+
Sbjct: 539 FFFTLPLKK 547


>gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453]
 gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453]
          Length = 559

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 122/238 (51%), Gaps = 11/238 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA   A + K  F+  +S+E+R+P+  +IG  DLL  S+L     +Q +Y   I 
Sbjct: 155 LVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL---QEEQREYATIIR 211

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L+N++NDILD + +++G M+L      L   + EV    + +  + N+++    +
Sbjct: 212 NSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLQLSYYIE 271

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729
            ++ S V  D  RL Q+   ++SNA+ F+++G   ++    +   D     F+VK+ G  
Sbjct: 272 ERIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLTQVEEDRLTLEFTVKDTGIG 331

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
           I  +    +F  F        R+  G GLGL+I  S + + GG +++ S + +G T +
Sbjct: 332 ISSEKIDRLFKPFSQLDSSMTRKYGGTGLGLAICRSLVQMMGGDITVESKENKGATFV 389


>gi|297518051|ref|ZP_06936437.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           OP50]
          Length = 724

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|229162131|ref|ZP_04290102.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803]
 gi|228621338|gb|EEK78193.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803]
          Length = 448

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSE--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           + S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELP 447


>gi|319653852|ref|ZP_08007946.1| hypothetical protein HMPREF1013_04565 [Bacillus sp. 2_A_57_CT2]
 gi|317394388|gb|EFV75132.1| hypothetical protein HMPREF1013_04565 [Bacillus sp. 2_A_57_CT2]
          Length = 372

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           ++E A+ E    +++ +++KN  V  V+++LRSPLT+IIG+ DL+   +  +   +   Y
Sbjct: 131 KSEEAIKE----VKRTEQLKNELVTSVAHDLRSPLTSIIGYLDLINNDRYSN-EVELRHY 185

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I A ++ L  L+NDI +   +    +KL+   I + ++LN++      ++    +  
Sbjct: 186 VQIIHAKTSSLYALINDIFEYTYMQNQQIKLHKEAINIEEMLNQIAVQTKVQLEAAGMEF 245

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
           ++ S         D  +L ++F  ++ NA+ + S G   +  A  D  D I   + N G 
Sbjct: 246 RLFSSVDDPVVEGDGVKLARVFENLIQNAIRYGSDGRY-LDAALHDRKDMIEIEIANYGQ 304

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           +IP      +F+RF  V  +      G GLGL+I +S ++LH G++ + S+  G T    
Sbjct: 305 AIPRIDLPHIFDRFYRVEKSRSQYTGGSGLGLAISKSIVDLHSGYIDVESA-PGKTAFTI 363

Query: 787 RIPSK 791
           ++  K
Sbjct: 364 KLFKK 368


>gi|302382337|ref|YP_003818160.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192965|gb|ADL00537.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 915

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 6/211 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PLT++IGF+ LL++S+  +L + + +Y + I+ SS  LL+++NDIL
Sbjct: 543 KSEFLANMSHELRTPLTSVIGFSGLLQSSE--ALPAAERRYADRIATSSEALLSVINDIL 600

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           D + ++A  + L+        +       + T+     + + + +   L G+ + D  RL
Sbjct: 601 DYSKLEADAVGLDPVAFDPTAMARATASIVETQCEAKGLSLVITTADDLPGAIMGDEGRL 660

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+    LSNA+ F++ G  + L     +G    +V ++G  +  D   ++F RF     
Sbjct: 661 RQVTLNFLSNAVKFTNTGE-IRLDVGSVDGRMRVAVTDSGIGVAADKIDALFERFTQADA 719

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              R   G GLGL+I    I + GG +  +S
Sbjct: 720 STTRVYGGTGLGLAICRRLIEMMGGEIGATS 750


>gi|239906948|ref|YP_002953689.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239796814|dbj|BAH75803.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1419

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            ++  V++T+    E  L    E   +    K+ F+ ++S+E+R+P+  I+G  DLL  + 
Sbjct: 1013 LMLIVDITERKALESELLAARERAEQGSRAKSDFLANMSHEIRTPMNAIMGMADLLADTP 1072

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               L  +Q +YV+    S  IL+ ++NDILDL+ ++AG + L      L + L +     
Sbjct: 1073 ---LTPRQKRYVDIFQHSGQILMRVINDILDLSKLEAGKLTLEPEPFDLPEALFQTCAVF 1129

Query: 659  ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              +  E  + +    D  L   V  D  RL QI + +L+NA  F+ +G   +  +A   G
Sbjct: 1130 TPQAEEKGLPLFCDLDPGLPRRVYGDPIRLTQIVANLLANACKFTHEGEIRLSASATLLG 1189

Query: 718  DFIF----SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
               F    + ++ G  I P+D+ +   N F    +  QRRG GLGL+I +    L  G +
Sbjct: 1190 PSAFLLRLTCRDTGVGIAPDDIARVCDNFFQVGGN--QRRGTGLGLAISKRLTELMQGEL 1247

Query: 773  SISS 776
            SI S
Sbjct: 1248 SIQS 1251


>gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
 gi|212662488|gb|EEB23062.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
          Length = 1444

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 911  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 968

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 969  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1028

Query: 683  DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G    V +  + D+      V+++G  IP+     +F 
Sbjct: 1029 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEIFE 1088

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            RF    NA     +G G+GL++ +  I+LH G +  + S EG
Sbjct: 1089 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEI-YAESPEG 1129


>gi|218904373|ref|YP_002452207.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218538730|gb|ACK91128.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 458

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I I+   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|330944138|gb|EGH46261.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 909

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   LG     N    +
Sbjct: 498 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRR 553

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 554 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 613

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  + +F V ++G 
Sbjct: 614 LNCTAAQGL-VVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGI 672

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 673 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 731

Query: 789 P 789
           P
Sbjct: 732 P 732


>gi|315186738|gb|EFU20496.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 1078

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 142/299 (47%), Gaps = 16/299 (5%)

Query: 503 IITSFDDERKSLQG--TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKN 559
           I  +F+ ER  ++      LL +  LE S  P    + +     VT  + + + AL    
Sbjct: 498 IQRAFEGERVVVEDRFVFGLLGERDLEVSYNPYREGERITHVAVVTRDITSYKDALRHLE 557

Query: 560 EALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +A R+A+E    K++F+  +S+E+R+PL  I G +DLL  S+   ++ +  + +  I  S
Sbjct: 558 DARRQAEEANRAKSAFLASMSHEIRTPLNAITGMSDLLLLSR---VSPEVEEGLAIIKDS 614

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +  LL L+NDILDL+ ++AG ++L    +   DL+    +    +     +  ++ +S+G
Sbjct: 615 AGTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELHLSEG 674

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIP 731
                  D  R+ QI   +LSNA+ F+ +G   +        D  +     V++ G  IP
Sbjct: 675 LPSEVNGDPVRIRQILINLLSNALKFTEEGGVTLSVTGHRMYDRDWEVELVVEDTGIGIP 734

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  + +F  F        RR  G GLGLSI      + GG V +SS     +T  CR+
Sbjct: 735 PEKLERIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTVVVSSEVGRGSTFVCRL 793


>gi|302344057|ref|YP_003808586.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301640670|gb|ADK85992.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 488

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +R  RAL    E +R  +++K+ F+  +S+EL++PL ++ GF  LL     G+ + ++SQ
Sbjct: 244 LRKTRALEMALEEIRSVEKLKDEFLTTLSHELKTPLVSLKGFLQLLLR---GAASPEESQ 300

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++E    +   L   +N++LDLA +         + + L  LL    +++     E+N+
Sbjct: 301 AHLEVCWRNLLKLEQQINNLLDLARLSQSKEHFRLAPVDLVKLLGTECENLRPTAEESNV 360

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            + V      G+ V  + ++L+Q+   ++ NA+ ++ KG  V L   R +G    +V+++
Sbjct: 361 SLSVDETPLEGAVVLGNAEKLIQLLDNLIVNAIKYNKKGGQVHLSVERGDGRVTLAVRDS 420

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I  +   S+FN+F      G  R  G+G+GL++V+  + LHGG +++ S
Sbjct: 421 GVGIAREHMASIFNKFYRADITGTGRLEGLGIGLALVQEIVKLHGGDIAVQS 472


>gi|302035922|ref|YP_003796244.1| hypothetical protein NIDE0543 [Candidatus Nitrospira defluvii]
 gi|300603986|emb|CBK40318.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 771

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 13/252 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPLTNI 587
           NA+       +TD +  ER + E+       NE L++ D+ ++ FV   S+ELR+P+T+I
Sbjct: 501 NARAYTELATLTDHL--ERRVQERTHELQTVNERLQEHDQRRSKFVSVASHELRTPMTSI 558

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + +     G L+ +Q  Y++ +  +   L  ++N +LD + +D G +++    + +
Sbjct: 559 KGFVENMLDGLTGQLSERQEHYLQRVKHNVDRLTRIINQLLDWSRLDVGRIEIKPEPLHI 618

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           ++ + +V +S  T   E +I + V+   +  +  ADR +L QI   ++ NA+ F+     
Sbjct: 619 DEFVRDVVESFQTLAAEKSIVLDVLPCEQPITVRADRDKLEQILWNLVGNAIKFTPPSGH 678

Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
           V +  +  +  +   +V + G  I  D    VFN F  V +A     +G  LGL I +S 
Sbjct: 679 VSVSCSICDARYAQITVADTGCGIAPDELPHVFNEFSKVESAMPSS-QGAQLGLFITKSL 737

Query: 765 INLHGGHVSISS 776
           + LHGG + + S
Sbjct: 738 VALHGGQMCVDS 749


>gi|299143500|ref|ZP_07036580.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517985|gb|EFI41724.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 593

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 168/383 (43%), Gaps = 38/383 (9%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKL 458
            V V SN   G +  MF  LT +++       L K +  TI ++++EGV      G +  
Sbjct: 227 RVEVKSNDEIGNLGSMFNYLTEELNTTINQMNLEKSKLNTIFNYMAEGVIAVSRSGYLIH 286

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +NP  R +   +EN L     +  +      Y + S                  SL+G  
Sbjct: 287 ANPIAREILDLDENYLKTKQDLTKLNIFGINYSDNS------------------SLEGES 328

Query: 519 EL-LSDSVLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           EL + D   +    P    + T L  + V   +  E  L          D ++  FV +V
Sbjct: 329 ELEIKDKFFKIKYAPYKKGRLTNLGLIVVLQDITKEHTL----------DVMRKEFVANV 378

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++P+T I  +++ L  SK+     K   +V+ I+  +T +  LV+D+L L+ +D  
Sbjct: 379 SHELKTPITTIRSYSETLLDSKMEPDEVKH--FVKIINRENTRMGRLVSDLLQLSNIDYK 436

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
                Y  I   D+L++  + ++  + E N  I +     + +  ADR  L QI   I+S
Sbjct: 437 TSNYVYEEIDTYDILSQTLEGLSVMIKEKNHNISLEIPMDIRNIYADRHALDQILMNIIS 496

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---G 753
           NA+ ++ +G  + + A  +  +    V++NG  IPE     +F RF     +G+ R   G
Sbjct: 497 NAIKYTDEGGKIKISATSNYFNVNIIVEDNGIGIPESDLPRIFERFY-RVEKGRSRAMGG 555

Query: 754 VGLGLSIVESFINLHGGHVSISS 776
            GLGLSI        GG + I S
Sbjct: 556 TGLGLSIARELTLSMGGDIKIDS 578


>gi|302556930|ref|ZP_07309272.1| sensor histidine kinase/response regulator [Streptomyces
           griseoflavus Tu4000]
 gi|302474548|gb|EFL37641.1| sensor histidine kinase/response regulator [Streptomyces
           griseoflavus Tu4000]
          Length = 1334

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 126/241 (52%), Gaps = 14/241 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ +Y
Sbjct: 751 QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLSPKQVEY 810

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ +      + ++  
Sbjct: 811 AQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVELRRLIEYVEATFRPMTMQKSLDF 870

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN---------GD 718
            V  + G     + D  RL Q+   +LSNA+ F+ +G   + ++ A D+         G 
Sbjct: 871 TVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGEVRLRIEPAPDDEVPSGVLRGGP 930

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            + F V++ G  IPE   +++F  F        R+  G GLGLSI     +L GG V++ 
Sbjct: 931 VVAFRVQDTGVGIPEQHLEAIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVD 990

Query: 776 S 776
           S
Sbjct: 991 S 991


>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus
           degradans 2-40]
 gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 1109

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 15/231 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KNEA   +   K+ F+  +S+E+R+P+  ++G   L+  S   SL  +Q + +    
Sbjct: 406 LAAKNEA-ESSSRAKSEFLACMSHEIRTPMNGVLGMLGLVLNS---SLTPEQERKLLLAQ 461

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL+++NDILD + V+AG ++L +     + LL++V QS      E  I + V+ D
Sbjct: 462 SSGQSLLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSAQEKGIEL-VLDD 520

Query: 675 GKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NG--DFIFSVKNNG 727
             LG  V   D  RL QI + +LSNA+ F+S+G  +I++A  D   NG      SV + G
Sbjct: 521 IGLGGKVLRGDPSRLRQIINNLLSNALKFTSQGE-IIVRAKLDSEINGLNQLRCSVTDTG 579

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             IP D    +F+ F        RR  G GLGLSI +    + GG + + S
Sbjct: 580 IGIPSDKISGLFDSFTQVDSSTTRRYGGTGLGLSICKMLTRIMGGDIFVVS 630


>gi|85859338|ref|YP_461540.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB]
 gi|85722429|gb|ABC77372.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB]
          Length = 583

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 164/348 (47%), Gaps = 42/348 (12%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + EGV +     RI+  N A  ++ +       P T IR    T    +  +D       
Sbjct: 250 MVEGVVILDSRNRIESCNQAIEAILE------RPETEIRE--KTLLEAFLNAD----LQN 297

Query: 503 IITSFDDERKSLQGTLEL--LSDSVLEYSIIP---LPNA--QTMLTFVNVTDSVRAERAL 555
            +  F  ERK +   + L      V++ SI     LP+   +TML F +VT         
Sbjct: 298 ALDRFRMERKPVLQEIRLGRKDPRVVDVSISAIKDLPDGVEKTMLVFHDVT--------- 348

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYI 613
                 L+K ++I+  FV +V++E+++PLT IIGF   L+T   G+L+ +++  ++++ I
Sbjct: 349 -----RLKKLEQIRTDFVANVTHEIKTPLTAIIGF---LQTLLDGALDDRETARKFLQTI 400

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + ++  L  LV+D+L L++++     L+   + ++ L+  +   +       NI + V  
Sbjct: 401 ATNAERLSRLVDDLLTLSSIELNETSLHLEPLSVDVLIRSILPMVNADAKAKNILLNVDL 460

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF-IFSVKNNGSSIP 731
                + +ADR R  QI   +L NA+ F+  G  V +  +  + G+F I  V + G  IP
Sbjct: 461 PEAFLNILADRDRAAQILMNVLHNAVKFTPAGGIVTVSGSEEEKGNFVIIQVVDTGIGIP 520

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                 +  RF  V  A   +  G GLGLSIV+  +  HGG + I S+
Sbjct: 521 PREIPRLGERFYRVDKARSRELGGTGLGLSIVKHLMAAHGGKMRIEST 568


>gi|309790612|ref|ZP_07685166.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227340|gb|EFO81014.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 973

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 112/219 (51%), Gaps = 5/219 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL---KTSKLGSLNSKQSQYVEYISASSTI 619
           R+ + +K+ FV +VS+ELR+PLT+I G   L+   K S    L  +    +    +++  
Sbjct: 488 REVERMKSEFVSNVSHELRTPLTSIQGTLQLVLGPKRSGSEGLPQRARDLLNVSLSNTER 547

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ L+NDILD+A ++ G ++L   T+ + DL       +    +   + I +     L S
Sbjct: 548 LIRLINDILDVAKIEQGRIELRRETLSVEDLCRAAVAEMHAFANHRGMSIDMDLQPGLPS 607

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +ADR R  QI   +LSNA+ FS    +V+L A  D     FSV++ G  I  +  + +F
Sbjct: 608 VLADRDRSTQILINLLSNAIKFSVGSQSVLLSARTDGSMVYFSVRDWGRGIDLENQERIF 667

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +FV       R   G GLGLSI ++ +   GG + + S
Sbjct: 668 QKFVQIDSSATRDVGGTGLGLSISKALVEEQGGRIWLES 706


>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 945

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 13/281 (4%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIK 569
            S +G LE + D V   + +    AQ + +F +  +    ER   L +  EA   A+  K
Sbjct: 219 PSCKGDLEQVVDLVETTTTLLTTQAQRLQSFTDSLEQAVRERTTELHQAKEAAEAANRAK 278

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+P+  ++G T+LL ++   +L  KQ    E +  S T L++++N+ILD
Sbjct: 279 SQFLANMSHEIRTPMNGVLGMTELLLST---ALTQKQRSLTETLHRSGTGLMDIINEILD 335

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
            + ++AG +KL      L   + +     A      ++ +       +  + + D  RL 
Sbjct: 336 FSKIEAGKLKLERIEFGLRQTVEDAVDLFAETAGRKHLELTCFVPPDIPDTVIGDPVRLR 395

Query: 689 QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QI   ++ NA+ F+  G   +    +     N    F +++ G  IPE     +F  F  
Sbjct: 396 QILLNLVGNAIKFTQSGDVAVTLELVTPTTTNLTLKFRIRDTGVGIPEATQARLFQAFSQ 455

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
             +   R+  G GLGL+IV+    L GG V + S S +G T
Sbjct: 456 ADNSTTRKFGGTGLGLAIVKQLALLMGGDVGVDSVSGQGST 496


>gi|239624738|ref|ZP_04667769.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521124|gb|EEQ60990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 806

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 128/237 (54%), Gaps = 13/237 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQ 608
           +A++ L E  +    A+  KN F+  +S+++R+P+  IIG T L   ++L +   K+   
Sbjct: 395 QAKQLLEEALQKAENANHAKNDFLSKMSHDIRTPMNAIIGMTQL---ARLHTGEEKRLKD 451

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+E I+ +ST LL+L+N++LD++ +++G +KL  +   LN LL +V + +   + +    
Sbjct: 452 YLEKIANASTHLLSLINEVLDVSKIESGTVKLEENEFNLNHLLEDVVEMVRISLDQKCQS 511

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIF 721
           + V I +G     + D +RL QI   IL NA  ++ +   + +      K  +  G + F
Sbjct: 512 LSVHIEEGLHPQVLGDERRLKQILVNILDNASKYTPEDGRISIRLNELNKMTQTMGTYCF 571

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +++ G  +  +  + +F  F    ++   +  G GLG++IV++ +++ GG + I S
Sbjct: 572 IIEDTGIGMKPEYIEHIFEPFSRADDSRTSKTVGTGLGMTIVKNLVSMMGGDIQIES 628


>gi|229917934|ref|YP_002886580.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469363|gb|ACQ71135.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 613

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 20/237 (8%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K+  V  VS+ELR+PL++I GFT+L+ +  L    S++  Y++ I   +  L  LVN
Sbjct: 383 DRMKSELVSTVSHELRTPLSSIYGFTELMLSRDLK--ESRRELYLKTIHDEAKRLSYLVN 440

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-----TKMHENNIRIKVISDGKLGSF 680
           D LDL  +++G     +  +   DL   V  S+A     T  HE  I      D     F
Sbjct: 441 DFLDLQKMESGKQAFEWEPV---DLYQLVTDSVAFYQETTDRHELFIDADTEQD-----F 492

Query: 681 V--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +  AD + + Q+   +LSNA+ +S  G  +++   R + + +  V+++G  IP      +
Sbjct: 493 IIDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERVDEEVVMKVRDHGMGIPSASLPHL 552

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792
           F +F  V N+ R +  G GLGL+I +     H G + + S     +T  C +P SKE
Sbjct: 553 FGKFYRVDNSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTFICELPTSKE 609


>gi|218246976|ref|YP_002372347.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218167454|gb|ACK66191.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 845

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 27/257 (10%)

Query: 552 ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ++AL E+N  L++A       +  K+ F+ ++S+E+R+PL  IIGF+DLL+T      + 
Sbjct: 339 QKALAEQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTL---VRDY 395

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K   Y+  I +S   LL L+NDILDL+ ++A  ++L    + L  L+ E+KQ  + +  +
Sbjct: 396 KSRSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQ 455

Query: 665 NNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720
            NI +   V SD  L     D  RL QI   ++ NA+ F+ KG   I      N D++  
Sbjct: 456 KNIELITDVSSDIPL-LIEFDEIRLRQILFNLVGNALKFTQKGYIKI----TVNCDYLDL 510

Query: 721 ------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                   V++ G  IP D    +F  F     +  R   G GLGL+I +    + GG +
Sbjct: 511 NKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTI 570

Query: 773 SISSSDEGVTTINCRIP 789
           S+ S  E  +T     P
Sbjct: 571 SLHSESEKGSTFLMIFP 587


>gi|217960662|ref|YP_002339226.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|217064570|gb|ACJ78820.1| sensor histidine kinase [Bacillus cereus AH187]
          Length = 458

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|301022112|ref|ZP_07186038.1| PAS domain S-box [Escherichia coli MS 69-1]
 gi|300397708|gb|EFJ81246.1| PAS domain S-box [Escherichia coli MS 69-1]
          Length = 778

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G    G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGNPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|253576699|ref|ZP_04854026.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843909|gb|EES71930.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 482

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 129/234 (55%), Gaps = 10/234 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASST 618
           E + ++++IK+ F+  +S+ELR+PLT I G+++ L +   G  + ++++  +  I+  + 
Sbjct: 236 EEIVRSNQIKDDFISSISHELRTPLTGIKGWSETLTS---GGFDPEETKIGIGIIAKETD 292

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L+ LV +ILD + + +  MKL    + L +LL E   ++  K  + +I++K + D   G
Sbjct: 293 RLIGLVEEILDFSKLQSNEMKLVIGEVNLKELLQETMLNVWAKAEQKHIQLK-LEDKTDG 351

Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735
           + +   D  RL Q+F  ++ NA+ FS + S + L   R + + +   V ++G  I E+  
Sbjct: 352 TAIVSGDGNRLKQVFLNVVDNAIKFSHEQSWIHLVIDRLDAERVKVDVIDSGIGISEEYL 411

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           K V +RF    H+G   G GLGL+I +  + LH G + I S     TT++  +P
Sbjct: 412 KKVKDRFFQVNHQGG--GTGLGLAISQQLVELHHGEMEIQSELGVGTTVSVILP 463


>gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1559

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 11/265 (4%)

Query: 534 PNAQTMLTFV--NVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           P+ Q+  + +   V  +V    A  E   + E+L   D  K  F  +VS+E R+PLT I+
Sbjct: 321 PDYQSFFSLIASQVATAVANALAFAEQRRRAESLAALDRAKIDFFSNVSHEFRTPLTLIL 380

Query: 589 G-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           G   +LL      +L +   + ++ +  +S  LL LVN +LD + ++AG +  ++  + L
Sbjct: 381 GPLEELLSEPARSALPADAREQLKVVHRNSLRLLKLVNMLLDFSRLEAGRIDAHFEPVDL 440

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS- 706
            +   ++     + + +  +R++V         + DR+   +I   +LSNA  F+  G  
Sbjct: 441 PEFTADLVAVFRSAIEKAGLRLQVDCPPAPFPALVDREMWEKIVFNLLSNAFKFTRHGEI 500

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
            V L        F   V++ G  IP +    VF RF  + +AH     G G+GLS+V+  
Sbjct: 501 EVSLHCL--GPTFELRVRDTGLGIPPESQSEVFKRFHRLKHAHSRTHEGTGIGLSLVQEL 558

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           + LHGG VS++S     T ++  IP
Sbjct: 559 VRLHGGTVSLTSEVNVGTIVSVTIP 583



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 29/247 (11%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            V  ERA   ++EA+  A   K+ F+  +S+ELR+PL+ ++    LL +          S 
Sbjct: 1163 VELERA---RDEAV-AASRAKDDFLAALSHELRTPLSPVL----LLASDAAADPQLPPSV 1214

Query: 609  YVEY--ISASSTILLNLVNDILDLATVDAGIMKLNY----STIVLNDLLNEVKQSIATKM 662
              ++  I  S  +   L++D+LDL  +    + L+     + + L D L  V+     K 
Sbjct: 1215 RADFETIRKSVELEARLIDDLLDLTRIVRDKISLDLREVDAPVALRDALINVRAEFEAK- 1273

Query: 663  HENNIRIKVISD-GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GD 718
                 RI ++ D      FV AD  RL Q+   +L NA+ F+  G  V + +  D+    
Sbjct: 1274 -----RIGLVLDLSPEPQFVRADPVRLQQVIWNVLKNAVKFTPAGGRVTITSRIDHERRR 1328

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-----QRRGVGLGLSIVESFINLHGGHVS 773
             + +V + G  +     +  F  F    H G     +  G+GLGL+I    + LHGG ++
Sbjct: 1329 LVLAVADTGIGMTAGEIERAFEAFAQGDHAGSGGSHRFGGLGLGLAISRRVVELHGGSIT 1388

Query: 774  ISSSDEG 780
              S   G
Sbjct: 1389 AQSPGRG 1395


>gi|115375522|ref|ZP_01462781.1| SdeK [Stigmatella aurantiaca DW4/3-1]
 gi|310818117|ref|YP_003950475.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367477|gb|EAU66453.1| SdeK [Stigmatella aurantiaca DW4/3-1]
 gi|309391189|gb|ADO68648.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 392

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 19/256 (7%)

Query: 540 LTFVNVTDS------VRA--ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           L   NVTD+      VR   ERAL  + E + +    +  F+  + ++LR+PL+ ++   
Sbjct: 115 LWLKNVTDARCKDSKVREALERALA-REERMAEEAAFRERFIGVLGHDLRNPLSAVM--V 171

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDL 650
            +    + GSL+S Q +  + I AS+  +  +++DILDL     +G + L    + L+ +
Sbjct: 172 SVRALCRYGSLSSTQQELGQRIEASAGRMSKMISDILDLTRARQSGGIPLFLMPMQLSTM 231

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +V   ++    +  I      D +    V D +RL Q+ S ++SNA++   +   VI+
Sbjct: 232 CQQVVGELSAASPDRCILYDAQGDSE---GVWDAERLAQVLSNLVSNALEHGGEEVPVIV 288

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH----RGQRRGVGLGLSIVESFIN 766
           ++          V N G  IP D   ++F  F   +     + +RRG+GLGL IV+  + 
Sbjct: 289 RSYSQGDMQALEVHNPGPPIPADRLATLFEPFQQGSPLAEGKRKRRGLGLGLYIVKELVQ 348

Query: 767 LHGGHVSISSSDEGVT 782
            HGG VS+ S+ EG T
Sbjct: 349 AHGGQVSVHSAGEGTT 364


>gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
 gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
          Length = 850

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 116/215 (53%), Gaps = 10/215 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  IIG + LL+      +   Q +Y+  ++ SS  LL+L+NDIL
Sbjct: 247 KSEFLANMSHEIRTPMNGIIGLSSLLQEM---DMPKDQKEYINMLNISSLSLLDLINDIL 303

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D + ++AG ++L ++++ L +L  EV+     K  E +I  +   D ++    + D  +L
Sbjct: 304 DFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGDATQL 363

Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+ + ++SNA+ F+  G     T +           F V ++G  +  DM  +VF++F 
Sbjct: 364 RQVLNNLVSNAIKFTHTGYVHLHTQLETETDTETTIRFEVIDSGIGVSVDMHDAVFDKFQ 423

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  R+  G GLGLSI    ++L GG + I+S
Sbjct: 424 QADGSTTRKYGGTGLGLSICRQIVHLMGGEIKINS 458


>gi|300853884|ref|YP_003778868.1| putative sensor histidine kinase [Clostridium ljungdahlii DSM
           13528]
 gi|300433999|gb|ADK13766.1| predicted sensor histidine kinase [Clostridium ljungdahlii DSM
           13528]
          Length = 456

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 3/236 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    + + K +++KN FV  VS+ELR+PLT+I G+   ++T         Q+  +E I
Sbjct: 220 ALNFMADEILKNEKLKNEFVASVSHELRTPLTSIKGWASTMRTGDFSDKEELQTG-LEII 278

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L  +V ++LD +   +G + L    + + + +  +K+  + +    NI   V  
Sbjct: 279 ENESDRLTKMVEELLDFSKFISGKITLKKDYVDIKNTIEYIKKQFSLRAWRQNINFSVKV 338

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +   + D  R+ Q+ + +L NA  F+ +G  V LKA   + + I  V + G  IPED
Sbjct: 339 QDNMPLVLLDENRIKQVLNNLLDNAFKFTQEGGKVTLKAFVKDENLIMIVDDTGIGIPED 398

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               V  +F     +  +   G+GLSI +  ++LHGG + I+S     T I   IP
Sbjct: 399 ELPKVTEKFFKG--KSDKCSNGIGLSICKEIVSLHGGKIEITSELVKGTEITLTIP 452


>gi|253563504|ref|ZP_04840961.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947280|gb|EES87562.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 635

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 134/263 (50%), Gaps = 7/263 (2%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P    + +    ++ D +R  + L E  +   +AD +K+ F+ ++S+E+R+PL  I+G
Sbjct: 243 IAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 302

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     ++ 
Sbjct: 303 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSG 359

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L++EV +    KM +  +++ VI   +      DR R+ Q+    LSNA+  + +GS + 
Sbjct: 360 LVDEVDKVHRLKM-KKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 417

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
               ++       V + G  I ++    +F RF       Q  G GLGL I +S +   G
Sbjct: 418 FGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 475

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S     +T    +P+++
Sbjct: 476 GRIEVESELGQGSTFILYLPNRQ 498


>gi|220929310|ref|YP_002506219.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999638|gb|ACL76239.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 508

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 123/219 (56%), Gaps = 4/219 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L++ +E++  F+ +VS+ELR+P+T+I GF + +    +     KQ  Y+  +   +  
Sbjct: 271 EDLQRLEELRRGFIANVSHELRTPMTSIRGFIEGILDGTIPP--EKQRGYLTIVRDETNR 328

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVND+LDLA +++G + L+     +N+L+      + T +   N++I+   D     
Sbjct: 329 LNRLVNDLLDLARMESGELTLSMKPFDINELIRICVIKLETLITSKNLQIEANFDVDSMM 388

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD+  + ++   +L NA+ FS++   +I++ A++      SVK+NG  I  D  K ++
Sbjct: 389 VLADKDSIERVIINLLHNAVKFSNENGKIIVETAKNKEKVFISVKDNGIGIDSDDKKRIW 448

Query: 740 NRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
           +RF  S+  RG+ + G GLGL+IV++ +  H   + + S
Sbjct: 449 DRFYKSDKSRGKDKTGTGLGLAIVKNILTEHKQDILLES 487


>gi|325291777|ref|YP_004277641.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
 gi|325059630|gb|ADY63321.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
          Length = 743

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 126/254 (49%), Gaps = 11/254 (4%)

Query: 536 AQTMLTFVNVTDSVRAER-ALTEK-NEALR--KADEIKNSFVQHVSYELRSPLTNIIGFT 591
           A + L   ++   V  ER AL E+ N  LR  KAD  K   +  VS+E+R PL+ ++G  
Sbjct: 200 ASSRLLISSIARDVTEERLALGERENARLRAEKADAEKARLLATVSHEIRLPLSGMLGMN 259

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  +KL   N +Q  Y++ +  S   L+ LV D+LD +T++AG  KLN     L  L+
Sbjct: 260 HLLSQTKL---NEEQRNYLDGMKQSGQSLVQLVEDLLDYSTMEAGRFKLNPRAENLRRLI 316

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             + + +A + HE  I I       +  ++  D  RL Q+   +L NA+ F+  G  V++
Sbjct: 317 ESIVEMLAHRAHEKGIEITSFVTPDVPDYLDFDPARLRQVLFNLLGNAVKFTQVGG-VVI 375

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
           +A    G+   +V++ G  + +     +F  F       Q+  G GLGL+I    +   G
Sbjct: 376 RARMVEGELHITVEDTGPGMSQAEQARIFGEFEQAGPMSQQSGGTGLGLAISARIVREFG 435

Query: 770 GHVSI-SSSDEGVT 782
           G +++ S   EG T
Sbjct: 436 GSLTVFSRKGEGST 449


>gi|265762626|ref|ZP_06091194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255234|gb|EEZ26580.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301162192|emb|CBW21737.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 638R]
          Length = 637

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 134/263 (50%), Gaps = 7/263 (2%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P    + +    ++ D +R  + L E  +   +AD +K+ F+ ++S+E+R+PL  I+G
Sbjct: 245 IAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 304

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     ++ 
Sbjct: 305 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSG 361

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L++EV +    KM +  +++ VI   +      DR R+ Q+    LSNA+  + +GS + 
Sbjct: 362 LVDEVDKVHRLKM-KKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 419

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
               ++       V + G  I ++    +F RF       Q  G GLGL I +S +   G
Sbjct: 420 FGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 477

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S     +T    +P+++
Sbjct: 478 GRIEVESELGQGSTFILYLPNRQ 500


>gi|224535278|ref|ZP_03675817.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523086|gb|EEF92191.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 755

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 10/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N T   +  + L E  +    +D +K++F+ ++S+E+R+PL  I+GF++LL  S      
Sbjct: 371 NNTKWEKMAQELKEMKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELLVDS---DDP 427

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y   I +++ +LL L+NDILDL+ +++GI+        L  L NE+   + +K+ 
Sbjct: 428 DEKKEYWHIIESNNDLLLRLINDILDLSKIESGIIDRKRERFNLTQLCNELYVMMRSKIP 487

Query: 664 ENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             N  ++++ D          D  RL Q++   L+NA+ ++  G   +  +   +G   F
Sbjct: 488 --NADVELVQDNPCPECWIFLDSNRLKQVWMNFLTNAVKYTRSGYIRMGYSVEKDG-IRF 544

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G+ IP+++   VF RF       Q  G GLGL+I  + +   GG +  +S     
Sbjct: 545 YVEDTGTGIPKELQDRVFGRFQKLNEFVQ--GTGLGLAISRAIVEAAGGEIGFTSEQGIG 602

Query: 782 TTINCRIPSK 791
           +T    +P +
Sbjct: 603 STFWAWVPCE 612


>gi|209526146|ref|ZP_03274677.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493402|gb|EDZ93726.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 335

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 123/237 (51%), Gaps = 16/237 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ + S+ELR+PL  +IGF  L+    +     ++ +++E    ++  LLNL+ND+
Sbjct: 95  LKSEFLANTSHELRTPLNGMIGFLQLV-LDGMADDPEEEREFIEQAHQAAIHLLNLINDV 153

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685
           LD+A ++AG M +  + + +++++ E++  I  ++ + N++  +  +      +   + Q
Sbjct: 154 LDIAKIEAGKMDIELALVKVDEVIGEIEHFIRPQVEQKNLKFTIQPEAVNSQIIVYGNYQ 213

Query: 686 RLLQIFSKILSNAMDFSSKG----------STVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           R+LQ+    L NA+ F+ KG            V+++  +  G   F V + G  +P +  
Sbjct: 214 RILQVILNFLENAIKFTHKGGINISIGIIRKNVMIQNQKFPGFVEFRVVDTGIGVPIEKQ 273

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
             +F+ F  V + +  Q  G GLGL I +  +   GG V   S  EG+ +T+   IP
Sbjct: 274 DRLFHAFSQVDSGYTKQYGGTGLGLVISQKLVQAMGGKVKFYSLGEGLGSTVTFTIP 330


>gi|254829515|ref|ZP_05234202.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|258601930|gb|EEW15255.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165]
          Length = 459

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L     ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D    ++  D + L Q++S +L+NA+ F+ +G  + ++   D  +    V+++G  I +
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISK 398

Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            DM K +F+RF  +N  R +  G  GLGLSI +  I LH G V++ SS E  TT   ++P
Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457


>gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
 gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
          Length = 980

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 16/245 (6%)

Query: 541 TFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +F ++   +RA  +AL ++N  L++ D++KN F+ + S+ELR+PL  IIG  D L     
Sbjct: 427 SFNSMAKQLRASFKALEDQNAELQRLDKLKNEFLANTSHELRTPLNGIIGIADSLLDGAT 486

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----K 655
           G L       +  I  S   L NLVN+ILD + +    + L   ++ + +++  V    K
Sbjct: 487 GPLPEPTRTNLVMIVVSGRRLANLVNNILDFSKLRHKSIDLQLKSVGMREIVEVVFTLSK 546

Query: 656 QSIATK--MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             I  K     NNI +       L    AD  RL QI   ++SNA+ F+  G   I    
Sbjct: 547 PLIGKKDLTFINNISV------DLPPVYADENRLQQILHNLVSNAIKFTDSGRIEISAEI 600

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
           ++N   + SVK+ G  I ED  + +F  F        R   G GLGL++ +  + LHGG 
Sbjct: 601 KENL-LVTSVKDTGIGISEDKFERIFESFEQADGSTARVYGGTGLGLAVTKKLVELHGGT 659

Query: 772 VSISS 776
           + ++S
Sbjct: 660 IHVAS 664


>gi|187923279|ref|YP_001894921.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           phytofirmans PsJN]
 gi|187714473|gb|ACD15697.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           phytofirmans PsJN]
          Length = 548

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 13/244 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E+ + E +E L  A    + FV  VS+ELRSPL+ I+ +TDLL+ +   +  S  ++  
Sbjct: 312 SEKRMREHSERLAMA---MDHFVTTVSHELRSPLSAIMSWTDLLQRA---ADPSHLARAT 365

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             IS ++  L ++V+D+LD   +  G + +N   + L  L   + + +  +MH     ++
Sbjct: 366 SVISRNARQLSHMVDDLLDSGAIVTGKLSVNLQPVDLGALAGIIAEDM--RMHAEAKGLR 423

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +I+D    + V AD  R+ Q+   ++SNA+ FS +G TV L    D      +V++ G  
Sbjct: 424 LIADDLASATVLADEGRMKQVVWNLVSNAVKFSPQG-TVELSVRADAECVEVAVRDTGLG 482

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
           +  +  + +F RF      G  R  G+GLGL +V++ ++LHGG V+  S   G   T   
Sbjct: 483 LDRESMERIFERFQQFGADGSGRVAGLGLGLWLVKNLVDLHGGTVTAESPGPGQGATFRV 542

Query: 787 RIPS 790
           R+P+
Sbjct: 543 RLPA 546


>gi|327253391|gb|EGE65029.1| TMAO reductase sytem sensor TorS [Escherichia coli STEC_7v]
          Length = 904

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++ +  IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKDRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLLEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|320105884|ref|YP_004181474.1| histidine kinase [Terriglobus saanensis SP1PR4]
 gi|319924405|gb|ADV81480.1| histidine kinase [Terriglobus saanensis SP1PR4]
          Length = 565

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 3/210 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D++KN F+  VS+ELR+PLT+I G   LL    LG+ + K    +     ++  L+ L+N
Sbjct: 59  DDVKNEFISTVSHELRTPLTSIRGALGLLSAGLLGNNDPKAQNLLRIALTNTDRLIRLIN 118

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DILDL  + +G   L  S   L+ +L      +     E ++ I++ +   L S + AD 
Sbjct: 119 DILDLERIQSGRSPLRTSACSLSTILERSVDDLMPLATEAHVHIELSAPADLSSGIQADP 178

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
            R+ Q+ + +LSNA+ FS  GS++ +K        +  V + G  IPE     +F+RF  
Sbjct: 179 DRIGQVVTNLLSNAIKFSDPGSSIRIKTEIHATTILLRVIDAGRGIPEGKLDLIFDRFQQ 238

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           V  +   Q+ G GLGL+I    +  HGG +
Sbjct: 239 VEPSDSRQKGGTGLGLTISRGIVQQHGGRI 268


>gi|251779712|ref|ZP_04822632.1| sensory box histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084027|gb|EES49917.1| sensory box histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 547

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 18/239 (7%)

Query: 554 ALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            + +KNE   L++ +E+++ F  ++S+ELR+PL  II    LL+       N  + ++++
Sbjct: 271 VVNQKNEMYKLKEEEEMRSQFFANISHELRTPLNIIISSFQLLRMY-----NYNEEEFLK 325

Query: 612 Y-------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           Y       IS + + +L L+N+I+D+   DAG  K+N+    +  L+  V  SIA     
Sbjct: 326 YYNKYENTISQNCSRMLRLINNIIDVTKFDAGCFKMNFVNCEIVSLVENVTLSIAEYEKA 385

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-- 722
               I   +D +      D + + +    +LSNA+ F+S    + +    +N D   S  
Sbjct: 386 RTRNIIFDTDCEFLEIKCDPENMERAILNLLSNAIKFTSDNGNIFVNIESENNDKYLSIT 445

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +K++G  IP+D  KS+F RFV    + R    G G+GLS+V+  +N H G + +  +++
Sbjct: 446 IKDDGIGIPKDFRKSIFERFVQVDKSFRRNVEGSGIGLSLVKYIVNSHAGEIYLKDTEK 504


>gi|228907601|ref|ZP_04071458.1| hypothetical protein bthur0013_17680 [Bacillus thuringiensis IBL
           200]
 gi|228852093|gb|EEM96890.1| hypothetical protein bthur0013_17680 [Bacillus thuringiensis IBL
           200]
          Length = 288

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 128/238 (53%), Gaps = 5/238 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL +   +  QY
Sbjct: 45  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEECEQY 103

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+ S + +   + ++       + + ++  
Sbjct: 104 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPLLDDADMSF 163

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 164 CINGDKEL-HVEMDVALMVRLFENVISNSIMYGKDGKKILIQVSKRDMNVEIEIKNFGQC 222

Query: 730 IPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
           IP++    VF +F     +H     G G+GL+I  S   LH G +++ S+D E V TI
Sbjct: 223 IPDENLPYVFEKFYRGEKSHSSHMGGKGMGLAIARSIAELHKGDIAVRSNDKETVFTI 280


>gi|77458389|ref|YP_347894.1| multi-sensor Signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
 gi|17980436|gb|AAL50631.1|AF418994_1 bacteriophytochrome [Pseudomonas fluorescens]
 gi|77382392|gb|ABA73905.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 745

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 10/231 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQ-SQY 609
           R +  + EA+R  DE+    V  VS++LR+P+T I     +++   S  G   S++ S  
Sbjct: 509 RQVRREQEAVRARDEL----VAVVSHDLRNPMTVISMLCGMMQKAFSSDGPHTSRRISTA 564

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++  +  L+ D+LD + +DAG   +    + +  +  E +  +A    + +I I
Sbjct: 565 IDTMQQAAGRMNTLLEDLLDTSKIDAGRYTIAPQKLDVAQMFEEAQSLLAPLALDKDISI 624

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D  L S  AD +RL Q+ S ++ NA+ F+ +  TV + A     D +F+V+++G  
Sbjct: 625 SFEADPDL-SIHADPERLFQVLSNLVGNAIKFTPRLGTVDVYAKSVGDDIVFTVRDSGEG 683

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           IP+D    VF+R+ +    G   G GLGL I +  +  HGG + ++ S+ G
Sbjct: 684 IPKDHLPHVFDRYWT-VKEGNPTGTGLGLYITQGIVEAHGGQI-VAESEPG 732


>gi|300694671|ref|YP_003750644.1| capsular synthesis two-component sensor kinase and response
           regulator transcription regulator protein (rcsc)
           [Ralstonia solanacearum PSI07]
 gi|299076708|emb|CBJ36047.1| putative capsular synthesis two-component sensor kinase and
           response regulator transcription regulator protein
           (rcsC) [Ralstonia solanacearum PSI07]
          Length = 1098

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 14/251 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           ++  +   V++ +    E  L E  +   +A+  K+ F+  V +E+R+PL   IG  +LL
Sbjct: 481 SSAVLFGLVDMNERKANEILLVEAKQTADEANRAKSMFLAIVGHEIRTPLHGAIGHLELL 540

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S   SL+ +Q ++V+  S S   LL LVND+LD   ++A  ++++   +  N++L   
Sbjct: 541 ARS---SLSLEQREWVDMTSRSFDALLTLVNDLLDSTKIEANALQISPVPMCPNEVLERC 597

Query: 655 KQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709
            +S    + +  +    I+D         D QRL QI   +LSNA  F+ +G+  I    
Sbjct: 598 ARSFGAAIVQGGVAFHCITDPDLDLVVDGDDQRLTQILQNLLSNAAKFTERGTITISSRC 657

Query: 710 LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           LK  R++G     F V + G  IP  M  ++FN          RR  G GLGL +  +  
Sbjct: 658 LK--REDGKVWARFEVADTGIGIPAAMQSTIFNPLAQADDSISRRFGGTGLGLFLCRNLA 715

Query: 766 NLHGGHVSISS 776
           +L GG +S+ S
Sbjct: 716 HLMGGRISVRS 726


>gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1287

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 27/254 (10%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L +  E    A + K+ F+ ++S+E+R+P+  IIG + L   S    L+ +Q  Y+ 
Sbjct: 617 ERDLLQAKEQAEAATQAKSEFLANMSHEIRTPMNAIIGISHLALRS---GLDRRQHSYLT 673

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-- 669
            I  ++  LL ++NDILD + ++A  ++L +    L D+L+ +      +  E  +++  
Sbjct: 674 RIDGAARSLLGIINDILDFSKIEANKLELEHVPFNLKDVLSRLSSIFDFQAEEKQLKLTF 733

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------------LKA 712
           ++  D  L S   D  RL Q+ + ++SNA+ F+S G  V+                 L A
Sbjct: 734 QLDPDTPL-SLKGDSMRLSQVLTNLISNAIKFTSHGEIVVSVSPGTSNTAHEAIPECLPA 792

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
              N    +FSV+++G  + +D    +F+ F        RR  G GLGLSI +  + + G
Sbjct: 793 KGYNQVCLMFSVRDSGQGMDQDQASRLFDAFFQADSSITRRFGGTGLGLSISKQLVEMMG 852

Query: 770 GHVSISSSD-EGVT 782
           G + + S   EG T
Sbjct: 853 GSIQVQSQPGEGST 866


>gi|77919621|ref|YP_357436.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77545704|gb|ABA89266.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 613

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ +E+K+  +  VS+E+R+PLT I+GFTD L  S       +Q  Y+  I   S  L  
Sbjct: 387 QRIEELKDDMLSSVSHEMRTPLTAIMGFTDYLLKSN--DRPERQKDYLSIIQQQSERLKE 444

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV + L+L  + AG        + +  LL+ V    ++    + IRI+   D  L     
Sbjct: 445 LVENHLNLQRLRAGHGVGAIHPVEVLPLLHGVSNMFSSARGRDRIRIQCPED--LPPVRG 502

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L +    +LSNA+ +SS+   ++L A R +   +  VK+ G  IP +   ++F+RF
Sbjct: 503 DENQLYRALYNLLSNAIKYSSEDQEILLGARRADDAAVLFVKDQGVGIPNEHQATIFDRF 562

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V     G  RG GLGLS+V+  I  H G + + S     +    ++P
Sbjct: 563 FRVPAGDHGM-RGSGLGLSLVQEIIKAHNGRIWLDSVPGQGSCFYLKLP 610


>gi|313139989|ref|ZP_07802182.1| sensor protein [Bifidobacterium bifidum NCIMB 41171]
 gi|313132499|gb|EFR50116.1| sensor protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 355

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   E  E L+ AD+++   V +VS+ELR+P++ +    + +    +          +E 
Sbjct: 102 RTFNEMAEELQHADQMRRDVVANVSHELRTPVSALQAMVENMADGVV----EPTPANLEG 157

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN     L+D L+E  +   IA   H ++I + 
Sbjct: 158 ILGQTHRLSDLIAFLLDLSRMEAGAASLNIERFCLHDFLDETIEPLEIADAGHAHDIMLH 217

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728
           V SD  +     D+ RL Q+F+ I++NA+  S+ G++V+++A    D G  + +V N GS
Sbjct: 218 VDSDIWME---GDQDRLRQLFTNIIANALKHSADGTSVLIEARENADTGTIVTNVVNFGS 274

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            IP +    +F RFV   +    +  G G+GLSI      LHGG V +     G
Sbjct: 275 QIPVEERSDIFRRFVKGRSGPGTESGGTGIGLSIARWAAQLHGGTVRVVDDPRG 328


>gi|308048557|ref|YP_003912123.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
 gi|307630747|gb|ADN75049.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
          Length = 899

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 13/227 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGFT  LLKT     L+  Q  Y+  I  S
Sbjct: 277 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFTRQLLKTP----LHDNQKDYLRTIERS 331

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           ++ LL+++NDILD + ++AG M L+     L D L+E    ++   ++  + + V  D +
Sbjct: 332 ASNLLSIINDILDFSKLEAGKMVLDNVPFALRDSLDETLTLLSGSAYDKGLEMVVEIDER 391

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF---SVKNNGSSIP 731
           +  S   D  R+ Q+ + ++ NA+ F+ KGS  + L  A ++ + +     V + G  I 
Sbjct: 392 VPDSLCGDVMRIQQVITNLMGNAIKFTDKGSVRLSLDLADESAERVLLRAEVSDTGIGIA 451

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           E+    +F  F        RR  G GLGL I +  +N   G +  +S
Sbjct: 452 EEQQPMLFQAFGQADSSVSRRFGGTGLGLVITKRLVNQMEGQIGFTS 498


>gi|300812473|ref|ZP_07092899.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496534|gb|EFK31630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 521

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L   NE ++  +E ++ F+Q V++E+R+PLT I G  + +K   +   +  +S  ++ 
Sbjct: 265 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 322

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  L+ LVN+ LD   + +G +++  S      ++N+V+Q +     +N  +I + 
Sbjct: 323 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNARTIMNDVQQQLTQNAAKNGNKIILD 382

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L  + AD+ R  Q+   +  NA+ F++ G T+ L+  R      FSV++ G  + +
Sbjct: 383 APEDLPVY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRFQHGATFSVQDTGIGMTQ 440

Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
           +  K +F RF     + A  G     GLGLSIV S +  HGG +  IS   EG T
Sbjct: 441 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIKVISKPHEGST 495


>gi|78062490|ref|YP_372398.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77970375|gb|ABB11754.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 672

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K+  +  VS+ELR+PL  I G+ ++L+      L     Q V+ I  S+  L ++V 
Sbjct: 292 NRLKDELLATVSHELRTPLNVIYGWVEVLRNVDGQGL---AQQAVDAIDRSARSLSHMVA 348

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD +++  G ++L    + L  ++ +  + +      + + +            ADR+
Sbjct: 349 DLLDASSLATGRLRLERVPVDLVRVVRDTTRELDATAQASGLELSTHYAMPTCVIPADRE 408

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           R+ Q+ S +LSNA+ F+  G  +++  AR       SV + G  I  +    +F  F   
Sbjct: 409 RVRQVLSNLLSNAIKFTPPGGRIVVSLARAGERVRLSVADTGQGIAPEYLPHLFETFSRP 468

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPS 790
             A    +RG+GLGLSIV +   LHGG V  +S+  G  TT+   +P+
Sbjct: 469 ERAFASPKRGLGLGLSIVRNIAQLHGGDVVATSAGPGRGTTVTVTLPA 516


>gi|288942367|ref|YP_003444607.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897739|gb|ADC63575.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 721

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 9/260 (3%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           PN    L +  VT  +R E+A     +ALR+AD  K+ F+  + +ELR+P+  I    ++
Sbjct: 323 PNTGRPLHYATVTRDIRTEKA---AEQALREADRRKDEFLAVLGHELRNPMAPIRHAVEI 379

Query: 594 LKTSKLGSLNSKQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+   LG     + ++ +E +   +  +  L++D+LD++ +  G ++L    + + +L+ 
Sbjct: 380 LRA--LGVDGDPRIRWAIEVLDRQTAHMGRLLDDLLDVSRIVQGRIELEPVELRVRELVQ 437

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +    +   M E+  R            + D  RL QI   IL NA +++  G  + + +
Sbjct: 438 QAADGVRALMEEHRHRFVCRLPAPGWRVLGDPVRLSQILLNILVNAANYTPPGGEIRIDS 497

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             +    +  V++NG  +  +   S+F  F    H G     G+GLGL+I     +LHGG
Sbjct: 498 RIEGDSVLIQVRDNGQGMTAEQLDSLFGLFTRGPHAGDADSGGLGLGLAIARRLADLHGG 557

Query: 771 HVSISSSDEGVTTINC-RIP 789
            +   S   G  T  C R+P
Sbjct: 558 CLEARSEGLGRGTELCLRLP 577


>gi|296822116|ref|XP_002850232.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
 gi|238837786|gb|EEQ27448.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
          Length = 2349

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 21/250 (8%)

Query: 550  RAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +A+ A  E N  ++    A + K+ F+ ++S++LR+P+T +IG ++LLK +KL   + KQ
Sbjct: 1832 KAKVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQ 1888

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              YVE I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     E  
Sbjct: 1889 DVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG 1948

Query: 667  IR----IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720
            +     +  I    L   + D  RL QIF  +LSN+  F+ KGS TV      D  + I 
Sbjct: 1949 LETVEDLDSIDPNLL--VMGDPVRLHQIFMNLLSNSYKFTPKGSVTVQAIVEEDTPEQIR 2006

Query: 721  --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSI 774
                V + G  I E+    +F  F S A     R   G GLGLSI ++ I ++ GG + +
Sbjct: 2007 VTCKVADTGIGISEEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWL 2065

Query: 775  SSSDEGVTTI 784
             S +   TT+
Sbjct: 2066 QSKEGEGTTV 2075


>gi|254420261|ref|ZP_05033985.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196186438|gb|EDX81414.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 848

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 10/228 (4%)

Query: 561 ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           A R+A+E    K+ F+ ++S+E+R+PL  ++   D L  S+ G L  ++ + VE I +S+
Sbjct: 456 ARRRAEEASRSKSEFLANMSHEIRTPLNGVVAMADAL--SRAG-LEPREREMVEVIRSSA 512

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L++DILD + ++AG + L  S   L D +         +  E  + ++V  +  +
Sbjct: 513 VTLERLLSDILDTSKIEAGQIVLERSVFDLGDTVRGAAALYRPRADEKGVALRVEVEPTI 572

Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            G+   D  R+ Q+ S ++SNA+ F+  GS V+   A D     F+V + G         
Sbjct: 573 EGAVEGDVVRVRQVLSNLISNALKFTETGSVVVTAVAVDEDRVRFTVSDTGCGFDAGQKG 632

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGV 781
            +FNRF        RR  G GLGL+I    + L GG +      DEG 
Sbjct: 633 RIFNRFQQADGSITRRFGGTGLGLAISRDLVALMGGVLDCDGRPDEGA 680


>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1820

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 14/234 (5%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            AL +   A   A+  K+ F+  +S+E+R+P+  +IG T LL  ++L    S+Q  +VE +
Sbjct: 1128 ALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTEL---TSQQRDFVETV 1184

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S   LL+++NDILD + +++G ++L      +   + +V   +A K  + +I +  + 
Sbjct: 1185 LTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLI 1244

Query: 674  DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARDNGDFIFSVK 724
              ++   +A D  RL QI + +L+NA+ F+ +G  V+         +  ++  + IF++K
Sbjct: 1245 HPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKTKNCCEIIFTIK 1304

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + G  I  +    +F  FV       R+  G GLGL I +    + GG++ + S
Sbjct: 1305 DTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVES 1358


>gi|71280971|ref|YP_268556.1| sensor protein TorS [Colwellia psychrerythraea 34H]
 gi|71146711|gb|AAZ27184.1| sensor protein TorS [Colwellia psychrerythraea 34H]
          Length = 1000

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 12/238 (5%)

Query: 561 ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           A ++ADE    K+ F+  +S+E+R+P+  +IG  +LL  +KL    S+Q +Y + I  S 
Sbjct: 459 AKQQADEANRAKSVFLASMSHEIRTPMNGMIGTLELLTDTKL---TSEQQKYAQTILYSG 515

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+++NDILD + ++AG + L+Y  I L  L  +V   +  +    ++++     G +
Sbjct: 516 ESLLDILNDILDYSKIEAGHIALSYRAIDLGKLGEDVVHLMRARAQNKSLQLHFEKKGNI 575

Query: 678 GSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIP 731
            ++ VAD  +L QI   +++NA+ F+ +GS V+     D     + +  FSV + G  I 
Sbjct: 576 ENWRVADLGKLRQILINLINNAIKFTQRGSIVLSIGVNDESSSGDSEVTFSVTDTGCGIA 635

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +D    VF  F    +     G GLGL+I +  ++   G +S+ S +   +     IP
Sbjct: 636 KDKQADVFQAFTQVDNLQSAVGTGLGLAICQRLVSAMQGTLSLESEENRGSCFAFTIP 693


>gi|60680665|ref|YP_210809.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
 gi|60492099|emb|CAH06862.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
          Length = 637

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 134/263 (50%), Gaps = 7/263 (2%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P    + +    ++ D +R  + L E  +   +AD +K+ F+ ++S+E+R+PL  I+G
Sbjct: 245 IAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVG 304

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     ++ 
Sbjct: 305 FSEII---ALTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSG 361

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L++EV +    KM +  +++ VI   +      DR R+ Q+    LSNA+  + +GS + 
Sbjct: 362 LVDEVDKVHRLKM-KKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-IT 419

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
               ++       V + G  I ++    +F RF       Q  G GLGL I +S +   G
Sbjct: 420 FGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVERLG 477

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S     +T    +P+++
Sbjct: 478 GRIEVESELGQGSTFILYLPNRQ 500


>gi|284035554|ref|YP_003385484.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283814847|gb|ADB36685.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1309

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 13/222 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +A + K+ F+ ++S+E+R+PL  +IGFTDL LKT+    L   Q QY+  ++ S+  LL 
Sbjct: 665 QASQAKSEFLANMSHEIRTPLNGVIGFTDLVLKTT----LTPTQHQYLTIVNQSANALLT 720

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
            +NDILD + ++AG ++L    + + +L ++  + I  +     + + +     +  F+ 
Sbjct: 721 TINDILDFSKIEAGKLELTIEKVDIYELTSQAAEIITYQAQTKGLEVLLNVAPDVPRFIY 780

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            D  RL Q+   +L NA+ F+ +G      T    +    G   F+V++ G  I  DM +
Sbjct: 781 TDSVRLKQVLVNLLGNAVKFTQQGEIELKVTATSVSEPGEGAIRFAVRDTGMGIRADMQQ 840

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F+ F        ++  G GLGL+I    + L G  + + S
Sbjct: 841 KIFHAFSQEDPSTTKKFGGTGLGLTIANKLLGLMGSQLELIS 882


>gi|159464805|ref|XP_001690632.1| hypothetical protein CHLREDRAFT_114537 [Chlamydomonas reinhardtii]
 gi|158280132|gb|EDP05891.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 218

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 5/212 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K+ F+  +S+ELR+PL  IIG +D +     G L  K  + +  +  S   LL L+ND
Sbjct: 6   ERKDEFLSAMSHELRTPLNGIIGLSDSMIAGACGPLPEKAVKTISTVKLSGKRLLQLIND 65

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD A +  G++ + +  + +  L+++V   ++  +    +R+ + + G +   V D  R
Sbjct: 66  ILDAAKMKQGMLVIKHEKVDIKRLVSDV-LDLSLPLVRKGVRL-INNVGNVPKIVGDNGR 123

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++QI   ++ NA  F+  G TV + A    G    +V + G  IP D    +F  F    
Sbjct: 124 IVQILYNLVGNATKFTRAG-TVSVSAGVVEGKVYITVSDTGVGIPPDKIDKIFEAFEQVD 182

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGL +V+  +  H G +S+ S
Sbjct: 183 MSTTRRFGGTGLGLHLVKELVKAHSGRISVQS 214


>gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1358

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 9/236 (3%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +A   A+  K  F+ ++S+ELR+PL  I+GF++LL+    G ++  Q   ++ I+ S   
Sbjct: 882  DAAEAANRAKTIFLANMSHELRTPLNAILGFSNLLRE---GDVSEWQRNDLDIINRSGEH 938

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LL+LV+++LD+A ++AG   L  +   L  ++ +V   +  +     + +       L  
Sbjct: 939  LLSLVDEVLDVAKIEAGRGVLEIAPYDLAGMVRDVMDMMGARAQMKGLALLHADSSGLPR 998

Query: 680  FV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA--RDNGDF--IFSVKNNGSSIPED 733
            +V AD  RL Q+   ++ NA+ F+  GS T+ L A    D+G F   F V++ G  +  +
Sbjct: 999  YVRADGPRLRQVLINLVGNAIKFTPSGSVTLRLDAGCVDDDGRFSLTFYVEDTGCGVAPE 1058

Query: 734  MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F  FV       ++G GLGL+I    + + GG VS+ S+    +     +P
Sbjct: 1059 DHERIFEPFVQVGPAATKKGSGLGLAITRQLVEMMGGTVSVESTPGKGSRFRVEVP 1114


>gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 969

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 128/252 (50%), Gaps = 7/252 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E  L    E    A+  K+ F+  +S+E+R+P+  +IG  ++L  +K   L+
Sbjct: 574 DITEQKEVETTLRLAREQAESANRAKSDFLAAMSHEIRTPMNAVIGMGEVLLETK---LD 630

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+E +  +   LL+L+N ILDL+ +++G M+L      L+ ++ E  Q    +  
Sbjct: 631 QEQRHYIETLQHAGEALLDLINAILDLSKIESGRMELVEQDFDLHKMVVETCQLFQVQCR 690

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721
           +  I + +  +    +++  D+ R+ QI   ++ NA+ F+ +GS TV +++       +F
Sbjct: 691 KQGIELNLNWEESNPTYIHGDQARIRQILFNLIGNAVKFTDEGSVTVEIRSIEQEKTLLF 750

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            + ++G  IP D  +++F +F        RR  G GLGL+I    +    G + + S + 
Sbjct: 751 KITDSGIGIPADKQETIFQKFSQADSSLSRRHGGSGLGLTICRHLVEHMKGRIWVDSEEG 810

Query: 780 GVTTINCRIPSK 791
             +  +  +P +
Sbjct: 811 QGSCFSFTLPCR 822


>gi|322804610|emb|CBZ02162.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 615

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 2/230 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++   F+ ++S+EL++PL  I     LL   +      KQ +Y++ I  +   L+ 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLDFYEKDVDYEKQDKYLKLIKQNCYRLMK 415

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD   +D+G ++LN     +  L+ E+  S+ +      I I   ++ +      
Sbjct: 416 LINNLLDTTKLDSGYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTEMEERVIAV 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  ++ +I   +LSNA+ F++ G  + +       +    +K+ G  IP D  +S+F RF
Sbjct: 476 DTDKIERIILNLLSNAIKFTNPGGNIFVNIKDSEENVYVHIKDTGVGIPSDKLESIFERF 535

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +    +  + G G+GL +V+SF+ +H G V+I+S     T    ++P+
Sbjct: 536 FQIDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTINSELGKGTEFIIKLPA 585


>gi|228901738|ref|ZP_04065910.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL
           4222]
 gi|228857870|gb|EEN02358.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL
           4222]
          Length = 448

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELP 447


>gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 949

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 122/228 (53%), Gaps = 12/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   +A  +K+ F+ ++S+E+R+P+  I+G   L++     SL+ K  +YVE + AS+
Sbjct: 304 KTEQALEASRMKSEFLANMSHEIRTPMNGILGVIRLMQNQ---SLDGKMRRYVETVDASA 360

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L++++ND+LD + ++AG     + +  L  ++ EV + +A++ HE  + +    + ++
Sbjct: 361 NTLMSIINDVLDFSKLEAGKYVAQHVSFDLRLVIQEVAELMASQAHEKGLELVYRVERRV 420

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIP 731
            +  V D  R  Q+ + ++ NA+ F+ +G  V++ A+    D        +V + G  I 
Sbjct: 421 PTGVVGDPDRFRQVLTNLVGNAIKFTDRGE-VLIDASTSQQDKATALIKLAVVDTGPGIA 479

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            D  K +F  F  V  +   +  G GLGL+I +  + + GG V + S+
Sbjct: 480 PDDQKKLFAAFSQVDGSLVRKHGGTGLGLAISKRLVEVMGGEVGLDST 527


>gi|167647488|ref|YP_001685151.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167349918|gb|ABZ72653.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 835

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 114/224 (50%), Gaps = 7/224 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  + E+   L +A++ K+ F+ ++S+ELR+PL  +I   D L      S   ++ +   
Sbjct: 444 EERVAERTAELERANQAKSVFLANMSHELRTPLNGVIAIGDRLAEE---SDPERRRELAA 500

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK- 670
            +++S  +L  ++ DILD++ ++AG  +LN +   L  L+  V +         ++    
Sbjct: 501 LVTSSGRLLEQVLGDILDVSKIEAGQFRLNPTPFDLAQLVGGVAELHRAAAEAKSLHFHW 560

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I  G  GS++ D  R+ QI + +L+NA+ F+  G  V+L   R +G   F+V + G   
Sbjct: 561 SIEPGVAGSYLGDSGRISQILNNLLANAVKFTVMGE-VVLSVERADGGLAFTVTDTGVGF 619

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            + + + +F RFV       R+  G GLGLSI  +   + GG +
Sbjct: 620 DDTVRERLFKRFVQADQSITRQFGGTGLGLSICAALAEMMGGRI 663


>gi|222054940|ref|YP_002537302.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221564229|gb|ACM20201.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 1215

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 10/249 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L  K + L +    K+ F+ ++S+ELR+PL +++  + LL  +K G+L+ KQ  + 
Sbjct: 522 ASRELQRKADELERISAYKSEFLANMSHELRTPLNSLMILSHLLMDNKEGNLSEKQVGFA 581

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             ++ +   LLNL+NDILDL+ V+AG ++ ++  + + DLL  ++        +  +  +
Sbjct: 582 RTMNDAGNDLLNLINDILDLSKVEAGRLEFHFEELKVIDLLEPLETMFRPLAEQKGLAFQ 641

Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV------ 723
           + +   +   ++ D QR  QI   +LSNA  F+  G   +L      G+ I  V      
Sbjct: 642 IKTGAGVPECISTDMQRTQQILKNLLSNAFKFTHNGGVEVLAGIPAPGENILPVPALAIA 701

Query: 724 -KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            +++G  I  +  + VFN F        R+  G GLGLSI         G ++++S +  
Sbjct: 702 IRDSGIGISAEKQEIVFNAFQQGDGSTSRKFGGTGLGLSISRQLARGMQGDITLASREGE 761

Query: 781 VTTINCRIP 789
            +     +P
Sbjct: 762 GSVFTVYLP 770


>gi|32477451|ref|NP_870445.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
 gi|32448002|emb|CAD77522.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
          Length = 718

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L ++   L + DE KN F+  +++ELR+PLT I    DLL+     + +  Q   +  
Sbjct: 334 RELQKEKALLSEMDERKNRFLALLAHELRNPLTPIGNAVDLLR---FAAKDPNQVNEIST 390

Query: 613 ISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +  S    L+ L++D++D++ +  G + L   T+ ++D++    +++ +  +E    +  
Sbjct: 391 VLESQVHQLVRLIDDLMDVSRITRGRIDLQRETVSIHDIVANSCRAVESLCNEMGHELIR 450

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            +D +    V  D  RL Q+ + +L+NA  ++     + +   + +G    +VK+NG  I
Sbjct: 451 RTDPEQSLHVHGDYVRLTQVVTNLLNNACKYTPPSGRIEISCGQVDGQVEIAVKDNGVGI 510

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  K +F  F  V    +  R G+G+GL++V+  + LHGG VS+  SD+  T    RI
Sbjct: 511 PPEHRKGIFEMFTQVDETLKDSRGGLGIGLTLVKQLVELHGGRVSLVDSDDTSTGSEFRI 570


>gi|325921207|ref|ZP_08183071.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548314|gb|EGD19304.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 477

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   +    K  F+  + +E+R+P+T ++G ++LL  +   SL++KQ  Y E I  + 
Sbjct: 194 KQELAEQGSLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDNKQRSYTESIRRAG 250

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G L
Sbjct: 251 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQERGLRFS-LEVGLL 309

Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
           G   A  D  R+ QI   +LSNA+ F+ +G   + L          F V + G  I  + 
Sbjct: 310 GDITASGDVTRIRQILLNLLSNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 369

Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +F RF   +  R   R  G GLGL+I +      GGHV + S
Sbjct: 370 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELALAMGGHVEVIS 414


>gi|310287285|ref|YP_003938543.1| Sensory transduction protein kinase [Bifidobacterium bifidum S17]
 gi|309251221|gb|ADO52969.1| Sensory transduction protein kinase [Bifidobacterium bifidum S17]
          Length = 369

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   E  E L+ AD+++   V +VS+ELR+P++ +    + +    +          +E 
Sbjct: 116 RTFNEMAEELQHADQMRRDVVANVSHELRTPVSALQAMVENMADGVV----EPTPANLEG 171

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN     L+D L+E  +   IA   H ++I + 
Sbjct: 172 ILGQTHRLSDLIAFLLDLSRMEAGAASLNIERFCLHDFLDETIEPLEIADAGHAHDIMLH 231

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728
           V SD  +     D+ RL Q+F+ I++NA+  S+ G++V+++A    D G  + +V N GS
Sbjct: 232 VDSDIWME---GDQDRLRQLFTNIIANALKHSADGTSVLIEARENADTGTIVTNVVNFGS 288

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            IP +    +F RFV   +    +  G G+GLSI      LHGG V +     G
Sbjct: 289 QIPVEERSDIFRRFVKGRSGPGTESGGTGIGLSIARWAAQLHGGTVRVVDDPRG 342


>gi|307730084|ref|YP_003907308.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307584619|gb|ADN58017.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 525

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 134/257 (52%), Gaps = 20/257 (7%)

Query: 550 RAERALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSK 605
           RAE AL  K+    ALR AD  K+ F+  +++ELR PL  +    ++L + +++ + +  
Sbjct: 136 RAENALQAKDAAERALRVADRRKDEFLATLAHELRDPLGAMRTAVEMLMRDTQVAAAHKP 195

Query: 606 QSQYVEYISASSTIL-------LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                  I  +  IL         L +D+LD++ +  G +++  + + L  +L++V  S 
Sbjct: 196 GGSERPGIGNALDILERQLGKAARLTDDLLDISRIAQGKIEIRRAPVHLQAILDDVVVSA 255

Query: 659 ATKMHENN----IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++  ++    + + +I +  +    AD  R+ QI   +L+NA+ ++  G  V L AAR
Sbjct: 256 RARLPSHDPTHTLEVDLIPEPVI--VDADAVRIAQIVQNLLNNALRYTPSGGWVRLTAAR 313

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           ++G  +  V +NG  I  D    VF  F  + A RGQ  G+G+GL++V +   LHGG V+
Sbjct: 314 EDGHAVIRVSDNGIGIAPDDLTRVFAMFGQAPAARGQG-GLGIGLALVRALAELHGGTVT 372

Query: 774 ISSSDEGV-TTINCRIP 789
            SS+  G+ +T   R+P
Sbjct: 373 ASSAGHGLGSTFEVRLP 389


>gi|238758178|ref|ZP_04619357.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
           ATCC 35236]
 gi|238703508|gb|EEP96046.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
           ATCC 35236]
          Length = 937

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 13/229 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 303 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 358

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + +++      
Sbjct: 359 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVVILLAHTAHEKGLELTLHVNNDVPEQV 418

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           V D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G  I E    
Sbjct: 419 VGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 478

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            +F  F        RR  G GLGL I E  +   GG +S  S  D G T
Sbjct: 479 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGST 527


>gi|283797817|ref|ZP_06346970.1| histidine kinase [Clostridium sp. M62/1]
 gi|291074502|gb|EFE11866.1| histidine kinase [Clostridium sp. M62/1]
 gi|295091968|emb|CBK78075.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase. [Clostridium cf.
           saccharolyticum K10]
          Length = 468

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +  +I+  F  + S+EL++P+T+I G+ +LL T    +   ++  ++  I   +  + 
Sbjct: 235 LEQEKQIRQEFFSNASHELKTPITSIRGYVELLDTPMADNAEMRKD-FLSRIKKEAVRMT 293

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++DIL ++ +++G  +     I   ++  E   S+     E  I+++  +D  L    
Sbjct: 294 RLIDDILMISRLESGGAQAELKDIRTLEIAREAASSVEGMAKERRIQVETDADDFL--IC 351

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +++ ++F+ +LSNA+ ++  G  V L   ++  D +  V +NG  IP++    +F R
Sbjct: 352 ADARQMEELFTNLLSNAVKYNLDGGRVWLSLKKERKDMVLIVSDNGVGIPKESLGRIFER 411

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGV--TTINCRIP 789
           F  V      ++ G GLGLSIV+  +N + G V  +SS +EG   T+   R+P
Sbjct: 412 FYRVDKGRSRKQGGTGLGLSIVKHIVNFYHGTVKVVSSQEEGKRGTSFIVRLP 464


>gi|223413878|gb|ACM89298.1| ethylene receptor [Eriobotrya japonica]
          Length = 601

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 175 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 234

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L  +T  L+ +  EV   I 
Sbjct: 235 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNMIK 291

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
               + + ++ + + +D  L + + D +RL+Q    ++ NA+ FS +GS  I       +
Sbjct: 292 PVASIKKLSVTLNIAADLPLYA-IGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSE 350

Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + RD    DF              VK++GS I P+D+ K +F +F        R   G G
Sbjct: 351 SLRDFRAPDFFPVQSENHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQTLATRNSGGSG 409

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 410 LGLAICKRFVNLMEGHIWIESEGLG 434


>gi|187934523|ref|YP_001886057.1| sensory box histidine kinase [Clostridium botulinum B str. Eklund
           17B]
 gi|187722676|gb|ACD23897.1| sensory box histidine kinase [Clostridium botulinum B str. Eklund
           17B]
          Length = 547

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 18/239 (7%)

Query: 554 ALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            + +KNE   L++ +E+++ F  ++S+ELR+PL  II    LL+       N  + ++++
Sbjct: 271 VVNQKNEMYKLKEEEEMRSQFFANISHELRTPLNIIISSFQLLRMY-----NYNEEEFLK 325

Query: 612 Y-------ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           Y       IS + + +L L+N+I+D+   DAG  K+N+    +  L+  +  SIA     
Sbjct: 326 YYNKYENTISQNCSRMLRLINNIIDVTKFDAGCFKMNFVNCEIISLVENITLSIAEYEKA 385

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-- 722
               I   +D +      D + + +    +LSNA+ F+S    + +     N D   S  
Sbjct: 386 RKRNIIFDTDCEFLEIKCDPENMERAILNLLSNAIKFTSDNGNIFVSIESQNNDECLSIT 445

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +K++G  IP+D  KSVF RFV    + R    G G+GLS+V+  +N H G +++  ++E
Sbjct: 446 IKDDGIGIPKDFRKSVFERFVQVDKSFRRNVEGSGIGLSLVKYIVNSHNGEINLKDNEE 504


>gi|85059258|ref|YP_454960.1| putative two-component sensor kinase [Sodalis glossinidius str.
           'morsitans']
 gi|84779778|dbj|BAE74555.1| putative two-component sensor kinase [Sodalis glossinidius str.
           'morsitans']
          Length = 927

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 134/256 (52%), Gaps = 11/256 (4%)

Query: 538 TMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           T+ T  +  ++V AER  AL E  +   +A++ K+S +  +S+ELR+PL+  +G  +LL+
Sbjct: 366 TLRTQYDNLENVVAERTRALNEAKQQAERANKRKSSHLTTISHELRTPLSGSLGALELLQ 425

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   +L  KQ Q  +        LL+++N++LD + +++G + L+     L  +L++  
Sbjct: 426 MT---TLTDKQFQLADTARQCVFSLLSIINNLLDFSRIESGQLSLHIEETPLLPILDQAM 482

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +I        + ++     ++  ++  D  RL QI   +L NA+ F+  G  + L   R
Sbjct: 483 HTIQGPGQSKGLTLRTFVGKQVPLYLDIDGMRLRQILVNLLGNALKFTQSGG-IFLSVKR 541

Query: 715 DNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +   IF+V ++G  I PED  K VF  F  +   G  +G GLGL+I  +   L GG ++
Sbjct: 542 RDQQLIFAVNDSGQGIAPEDQEK-VFAPFFQS--EGTMQGTGLGLAIAANLAKLMGGSLT 598

Query: 774 ISSSDEGVTTINCRIP 789
           +SS+    T ++  +P
Sbjct: 599 LSSTPGLGTCMSFIMP 614


>gi|330979424|gb|EGH78085.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 1003

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   LG     N    +
Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRR 584

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIE 644

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  + +F V ++G 
Sbjct: 645 LNCTAAQGL-VVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGI 703

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +    +F R+ S    G  RG GLGL I +  +  HGG +   SS +  +  +  +
Sbjct: 704 GIPVEHLPFIFQRYWS-VKEGNPRGNGLGLYICQGIVTAHGGRLWADSSLDSGSVFSFTL 762

Query: 789 P 789
           P
Sbjct: 763 P 763


>gi|227879193|ref|ZP_03997065.1| sensor histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256849419|ref|ZP_05554851.1| two-component sensor [Lactobacillus crispatus MV-1A-US]
 gi|262046086|ref|ZP_06019049.1| two-component system sensor kinase [Lactobacillus crispatus
           MV-3A-US]
 gi|312976907|ref|ZP_07788656.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
 gi|227861196|gb|EEJ68843.1| sensor histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256713535|gb|EEU28524.1| two-component sensor [Lactobacillus crispatus MV-1A-US]
 gi|260573416|gb|EEX29973.1| two-component system sensor kinase [Lactobacillus crispatus
           MV-3A-US]
 gi|310896235|gb|EFQ45300.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
          Length = 384

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++ K+  + +VS+++R+PLT+IIG+  LLK       + K+   + Y  A    +  
Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKAGVTSPEDQKKYVNIAYTKAEQ--MKA 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ +  T+ +   KLN + + +  +L +V      +  +N I I++ +  K  +  A
Sbjct: 206 LANDLFEYTTLKSTNTKLNLNDLHIYSMLEQVAAGFELEAEKNGIEIEIEARPKNLTIKA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++++ ++SNA  + +  + + L A   N   +   V+NNG+ IP+     +F R
Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKREVELRVENNGAPIPKKSLNKIFER 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGLSI +  ++LH G +    S+E  T+   R+P
Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIR-CESNEKWTSFIIRLP 374


>gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1253

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 7/256 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLK 595
           Q   T+     +V A     ++ EAL   D  K  F  +VS+E R+PLT ++G   +LL+
Sbjct: 330 QLTATYNTAISNVYAYEQEQKRAEALAAIDRSKTLFFSNVSHEFRTPLTLMLGPLEELLQ 389

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              L      Q   VE    ++  LL LVN++LD + V+AG ++  Y  + L ++  ++ 
Sbjct: 390 QHGLDGHTRVQ---VEATHRNALRLLKLVNNLLDYSRVEAGRVQAVYQRLDLQEMTIDLA 446

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S  + + +  + + V       S+ ADRQ   +I   +LSNA  ++ +GS  +    ++
Sbjct: 447 SSFRSIIEKAGMELNVHCSPLSASYYADRQMWEKIVLNLLSNAFKYTLQGSISVTLEEQE 506

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           N   +  VK+ G  IP+     +F RF  + N       G G+GLS+V   ++LH G ++
Sbjct: 507 NMA-VLKVKDTGVGIPQKELPHMFERFHRIENTAGRTHEGTGIGLSLVHELVHLHAGTIT 565

Query: 774 ISSSDEGVTTINCRIP 789
           + S +   +T    IP
Sbjct: 566 VESIEGTGSTFTVCIP 581



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 112/235 (47%), Gaps = 19/235 (8%)

Query: 564  KADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ------YVEYISAS 616
            K DEI KN F+  VS+EL++PLT+++GFT      +LG  N++++Q        E  +  
Sbjct: 1022 KEDEIRKNDFIGMVSHELKTPLTSLVGFT------QLGLRNAQKNQDSLNFSIYEKTNRQ 1075

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               + +L+N  L+++ +++G + L+ +   L++L+ E+           + ++  +    
Sbjct: 1076 LIKMSSLINGFLNVSQLESGKIHLHLTDFRLDELIREMIADAGLAASGYDFQVDCVEL-- 1133

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 ADR ++  + + +LSNA+ + +    + +  +  +G    SV + G  I E    
Sbjct: 1134 --IINADRNKIGTVLTNLLSNAIKYGANSRVISIACSCTDGYARVSVTDQGIGIKEADIS 1191

Query: 737  SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+R+  + N       G G+GL +    I  H G +   S     TT+   +P
Sbjct: 1192 KLFDRYYRIENNQTQHISGFGIGLYLSAEIIGRHHGKIWAESEPGKGTTLFVELP 1246


>gi|126656663|ref|ZP_01727877.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126621883|gb|EAZ92591.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 820

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 13/234 (5%)

Query: 555 LTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           L E+ +A RK    A+ IK+ F+  +S+ELRSPL  I+G++ LL+T K  S  +++   +
Sbjct: 440 LLEREQAARKEAEQANRIKDEFLAMLSHELRSPLNPILGWSTLLQTKKFDSATTQKG--L 497

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIR 668
             I  ++ +   L++D+LD+A +  G +KL  +T+ L  ++ E  + +  A +     +R
Sbjct: 498 STIERNAKLQTQLIDDLLDIARILRGKLKLKETTVNLVTVIEEGIEVVRRAAEAKSIALR 557

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
             +I   ++     D  RL Q+   +LSNA+ F+ +G  VI++    +     +V + G 
Sbjct: 558 FNLIDSCQVR---GDEGRLEQVLWNLLSNAVKFTPEGGQVIVQLEVLHDQACITVVDTGK 614

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            I  +    +F  F        R   G+GLGL+IV+  ++ HGG ++  S+ EG
Sbjct: 615 GIKPEFLPDLFQTFCQEDISITRNYGGLGLGLAIVKYLVDAHGGSITAESAGEG 668


>gi|56415257|ref|YP_152332.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197364187|ref|YP_002143824.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56129514|gb|AAV79020.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095664|emb|CAR61232.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 778

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 1101

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 134/261 (51%), Gaps = 15/261 (5%)

Query: 530 IIPLPNAQTMLT-FVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I P+ N Q  LT +V +   +  ++A    L E   A  +A+  K+ F+  +S+E+R+P+
Sbjct: 526 ISPVFNEQQQLTAYVGIQQDITEQKAANQLLIEAKAAAEQANIAKSEFLAAMSHEIRTPM 585

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++G  +L+  S   SLN KQ   V     S+  LLN++NDILD + VDAG ++L    
Sbjct: 586 NGVLGMLNLILDS---SLNEKQHHQVSIALNSANSLLNIINDILDFSKVDAGKLELEELE 642

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             L ++L++  ++IA   H  NI + + I   +    + D  RL QI + +++NA+ F+ 
Sbjct: 643 FNLCNMLDDFIETIAIHAHSKNIPLMLDIEHLEYAFVIGDAGRLKQILTNLVNNALKFTH 702

Query: 704 KGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           KG   VI K    N +   F   V ++G  I       +F  F  V ++   +  G GLG
Sbjct: 703 KGEVQVIAKLTPINNNQMRFNCQVIDSGIGISAAQQAKLFKSFSQVDSSTTRKYGGTGLG 762

Query: 758 LSIVESFINLHGGHVSISSSD 778
           L+IV+   +L  G + + S +
Sbjct: 763 LAIVKKLCHLMEGDIQVQSKE 783


>gi|145606116|ref|XP_001406723.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15]
 gi|145013842|gb|EDJ98483.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15]
          Length = 1994

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 15/223 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +L  +Q  Y   I  S+  L+
Sbjct: 1312 LKEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQET---TLTEEQRDYTNTIHTSANSLI 1368

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+  V + ++T      + +  I + ++ ++V
Sbjct: 1369 MIINDILDLSKVDAGMMKLKYEWFHTTSLIEAVNELVSTMAIAKGLELNYIVEPEVPAWV 1428

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFI---FSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F+S+G      S   +K      D I   FS+ + G    
Sbjct: 1429 KGDKVRIRQVLLNVIGNAIKFTSEGEVFSRCSVATVKENEIGEDEIMLEFSIIDTGRGFT 1488

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +D  + +F  F  +  +   Q  G GLGL I    + LHGG +
Sbjct: 1489 KDESELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGQM 1531


>gi|16804620|ref|NP_466105.1| hypothetical protein lmo2582 [Listeria monocytogenes EGD-e]
 gi|16412070|emb|CAD00660.1| lmo2582 [Listeria monocytogenes EGD-e]
          Length = 459

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L     ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D    ++  D + L Q++S +L+NA+ F+ +G  + ++   D  +    V+++G  I +
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISK 398

Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            DM K +F+RF  +N  R +  G  GLGLSI +  I LH G V++ SS E  TT   ++P
Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457


>gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
 gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
          Length = 868

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 131/264 (49%), Gaps = 17/264 (6%)

Query: 526 LEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +E+S +PL + Q  +     ++ +++        + +  E+  +A+  K  F+ ++S+E+
Sbjct: 160 IEHSSVPLYDDQKNVIGIIGSYYDISSIKSVAEQMEQAKESAEQANVAKGEFLANMSHEI 219

Query: 581 RSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           R+P+  I+G  +L LKT     L+ KQ +Y++ I +SS  LL ++NDILD + +DAG + 
Sbjct: 220 RTPINAIVGMANLCLKTQ----LSEKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLS 275

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
           +      L D+L  +    A K ++ ++   +     + +    D  RL Q+   ++SNA
Sbjct: 276 IERIPFDLQDVLTSLADMFAYKAYDKDLEFIINLPANIPTRLFGDPLRLNQVLVNLVSNA 335

Query: 699 MDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + F+  G    +  +L    D      SV + G  + E+   ++F  F        R+  
Sbjct: 336 IKFTEDGEINVAVTLLDKNTDKVWLRISVTDTGIGMDEEQRANLFKAFTQADSSTTRKYG 395

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL+I    I L GG + ++S
Sbjct: 396 GTGLGLAISRRLIQLMGGDIGVTS 419


>gi|83950384|ref|ZP_00959117.1| PAS [Roseovarius nubinhibens ISM]
 gi|83838283|gb|EAP77579.1| PAS [Roseovarius nubinhibens ISM]
          Length = 1083

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 32/256 (12%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFT----------------------DLLKTSKLGSL 602
            A+  K  F+  +S+ELR+PLT I+G+                       DL  T  +  L
Sbjct: 817  ANVAKTDFLNVMSHELRTPLTVILGYNSFLAKPELLTSVKELREAASAGDLTATGAIEHL 876

Query: 603  NSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             + Q +  +Y   +  S   LL L+N++LDLA +DAG +K++   + L  ++  V    +
Sbjct: 877  EAVQREVGKYAGKMEDSGKHLLKLINEMLDLAKIDAGKLKIDPVDLELERVVRSVLDQFS 936

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
               HE ++ + V + G+L  F AD  RL QI   ++ NA+ F+ KG  + ++A     D 
Sbjct: 937  NAAHEKSVDL-VGAIGELSVF-ADEMRLRQILINLVGNALKFTDKGQ-IRIEAEVKGADV 993

Query: 720  IFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V+++G  IP      +F++F    S+A R  + G GLGL+I    + L GG +S++S
Sbjct: 994  AIHVRDSGCGIPAKEQALIFDQFNQIDSSASRA-KGGTGLGLTISRRLVELQGGRISVTS 1052

Query: 777  SDEGVTTINCRIPSKE 792
             +   +     +P +E
Sbjct: 1053 EEGKGSVFTFTLPMEE 1068


>gi|311064133|ref|YP_003970858.1| sensory transduction protein kinase [Bifidobacterium bifidum
           PRL2010]
 gi|310866452|gb|ADP35821.1| Sensory transduction protein kinase [Bifidobacterium bifidum
           PRL2010]
          Length = 368

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   E  E L+ AD+++   V +VS+ELR+P++ +    + +    +          +E 
Sbjct: 115 RTFNEMAEELQHADQMRRDVVANVSHELRTPVSALQAMVENMADGVV----EPTPANLEG 170

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN     L+D L+E  +   IA   H ++I + 
Sbjct: 171 ILGQTHRLSDLIAFLLDLSRMEAGAASLNIERFCLHDFLDETIEPLEIADAGHAHDIMLH 230

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGS 728
           V SD  +     D+ RL Q+F+ I++NA+  S+ G++V+++A    D G  + +V N GS
Sbjct: 231 VDSDIWME---GDQDRLRQLFTNIIANALKHSADGTSVLIEARENADTGTIVTNVVNFGS 287

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            IP +    +F RFV   +    +  G G+GLSI      LHGG V +     G
Sbjct: 288 QIPVEERSDIFRRFVKGRSGPGTESGGTGIGLSIARWAAQLHGGTVRVVDDPRG 341


>gi|266621452|ref|ZP_06114387.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479]
 gi|288866893|gb|EFC99191.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479]
          Length = 496

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 139/251 (55%), Gaps = 10/251 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADE--IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +T  +  ER   EK E   + ++  +K++ ++ +S++LR+PLT I G ++ L     GSL
Sbjct: 243 ITLVLERERLNEEKEETKIQIEKERLKSTLLRSISHDLRTPLTGIAGSSNFLY-DNYGSL 301

Query: 603 NSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           + + ++  +  I   +  L ++V ++L++  +  G + +     V++DL++     ++ +
Sbjct: 302 DEETAKSMLNDICTDAEWLNSMVENLLNMTRIQEGRLDIQKKKEVVDDLISGAVTLVSKR 361

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
           + ++  R+K ++   +     D +   Q+   ++ NA+  S   +T+ + +AR  G+FI 
Sbjct: 362 LGDH--RLKTVTPHDIVLLPVDARLFTQVLVNLIDNAIRHSGNDTTITV-SARVMGNFIT 418

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V +NGS IPE+    +F+ F + A+    ++RGVGLGL+I ++ +  HGGH+   +++
Sbjct: 419 FKVSDNGSGIPEERLDKIFDNFFTTAYENGDKQRGVGLGLTICKAIVEAHGGHIKAVNNE 478

Query: 779 EGVTTINCRIP 789
            G TT    +P
Sbjct: 479 GGGTTFQVDMP 489


>gi|187935686|ref|YP_001886721.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723839|gb|ACD25060.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 502

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 153/308 (49%), Gaps = 27/308 (8%)

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           P T++  +A       N+    D   +     +DE  +L  TL  LS +        L N
Sbjct: 204 PLTNLNTVA-------NKMSNMDFTVSCDVDREDEIGNLARTLNFLSKN--------LQN 248

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A        +TD  +  + L E  E  RK + ++  FV +VS+EL++P+  I G+ + LK
Sbjct: 249 A--------LTDLKQKNQKLEEDIEKERKLENMRKEFVDNVSHELKTPIGIIEGYAEGLK 300

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +   ++    Y+E I + S  +  LV ++L+L+ +++G +K    +  +N L++++ 
Sbjct: 301 DGIVSGDDA--LAYLETIISESQKMNALVKNMLELSKLESGTIKPKLESFNINRLISKIL 358

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           ++   K  EN+++I   S        AD  ++ Q+ + I++NA+ ++   + + +    +
Sbjct: 359 KNNHLKFEENDLKINFNSSNPYSYVYADIFQMDQVITNIITNAIKYTPSHNLIDVSINEE 418

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           N  F  S+KN G +IPE     +F++F  +  + +  +   GLGLSIV++ + LH    +
Sbjct: 419 NDKFKISIKNMGVNIPESEINKIFDKFYRIDKSRQRTKDSTGLGLSIVKNILKLHNSEFN 478

Query: 774 ISSSDEGV 781
           + + D GV
Sbjct: 479 LKNIDNGV 486


>gi|189347557|ref|YP_001944086.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341704|gb|ACD91107.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 990

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 134/252 (53%), Gaps = 15/252 (5%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   Q + T + + +SVR      E  ++ R+A+E K+ F+ ++S+E+R+P+  +IG +D
Sbjct: 305 LARNQLIETNMKLGESVRK---TEEMAKSAREANEAKSRFLANMSHEIRTPMNGVIGMSD 361

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  +   SL+ +Q +YVE I +S   LL ++NDILD + ++A  ++L++    L DLL 
Sbjct: 362 ILLDT---SLDIEQRKYVETIISSGKNLLKIINDILDFSKIEANRLELDHIDFNLIDLLE 418

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +V   +  + +E  + +   +   L      D  RL QI   ++SNA+ F+ +G  V+L 
Sbjct: 419 DVGTLLGFEAYEKELELVFRTGPTLPLRLKGDPARLRQILVNLVSNAIKFTHEGE-VVLD 477

Query: 712 AA--RDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           A   R+  + +   F+V + G  I E+   S+F  FV       R+  G GLGLSI    
Sbjct: 478 AVLERETSEQVVIGFTVSDTGIGIEEERKGSIFEPFVQADGTTIRKYGGTGLGLSISSHL 537

Query: 765 INLHGGHVSISS 776
               G  +++ S
Sbjct: 538 AEKMGSGITVQS 549


>gi|237800772|ref|ZP_04589233.1| bacteriophytochrome [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023630|gb|EGI03687.1| bacteriophytochrome [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 621

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQ 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +G     N    +
Sbjct: 147 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTTIENRNIRR 202

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 203 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACGLLVMLTTEKNIE 262

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   S   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  +  + +F V ++G 
Sbjct: 263 LNCTSAHGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVAEGNEVLFKVSDDGI 321

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP++    +F R+ S    G  RG GLGL I +  +  HGG +   SS +  +  +  +
Sbjct: 322 GIPKEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIVTAHGGRLWADSSLDSGSIFSFTL 380

Query: 789 P 789
           P
Sbjct: 381 P 381


>gi|168238030|ref|ZP_02663088.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734174|ref|YP_002116278.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|204931174|ref|ZP_03221968.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194709676|gb|ACF88897.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197289156|gb|EDY28525.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204319941|gb|EDZ05147.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322615332|gb|EFY12253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618309|gb|EFY15200.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322622886|gb|EFY19730.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626792|gb|EFY23589.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631361|gb|EFY28121.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635372|gb|EFY32086.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322647057|gb|EFY43558.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651580|gb|EFY47953.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655052|gb|EFY51363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657655|gb|EFY53923.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664151|gb|EFY60349.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667434|gb|EFY63596.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322674682|gb|EFY70774.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675685|gb|EFY71758.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682321|gb|EFY78344.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684924|gb|EFY80922.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195871|gb|EFZ81042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198988|gb|EFZ84085.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204312|gb|EFZ89321.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207659|gb|EFZ92606.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323211288|gb|EFZ96132.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214770|gb|EFZ99519.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221250|gb|EGA05676.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323224008|gb|EGA08301.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230342|gb|EGA14461.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233318|gb|EGA17412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239355|gb|EGA23405.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242394|gb|EGA26420.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246904|gb|EGA30870.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254163|gb|EGA37983.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255280|gb|EGA39057.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262743|gb|EGA46299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264053|gb|EGA47561.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269439|gb|EGA52894.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 778

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 2654

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 123/245 (50%), Gaps = 12/245 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGS 601
            +++T S  A  A+ +  E    A++ K+ F+ ++S+E+R+P+  IIG + L L+T     
Sbjct: 1815 MDITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTD---- 1870

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            LN +Q  Y+  +  S+  LL ++NDILD + ++AG + + +    L D+L+ +   +  K
Sbjct: 1871 LNGRQRNYITKVKRSAEALLGIINDILDFSKIEAGKLTMEFIDFRLEDVLDNLSNLVGLK 1930

Query: 662  MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
              E  + +   +  G   +   D  RL Q+   + +NA+ F++ G  V+    L+   + 
Sbjct: 1931 AEEKGLELHFSLPPGLHTALKGDPLRLGQVLINLGNNAVKFTAHGDVVVKVQQLERTTER 1990

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                FSVK++G  +  +    +F  F        R+  G GLGL+I +  + +  G + +
Sbjct: 1991 IKLYFSVKDSGIGMTPEQKGLLFKSFSQADASTTRKFGGTGLGLAISKRLVEMMEGEIDV 2050

Query: 775  SSSDE 779
             S  E
Sbjct: 2051 DSVPE 2055


>gi|28869841|ref|NP_792460.1| bacteriophytochrome [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853086|gb|AAO56155.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 993

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +   N +     +
Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRR 579

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 639

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   S   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  D +F V ++G 
Sbjct: 640 LNCTSAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGI 698

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP      +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 699 GIPAQHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 757

Query: 789 P 789
           P
Sbjct: 758 P 758


>gi|148243694|ref|YP_001219934.1| signal transduction histidine kinase with CheB and CheR activity
            [Acidiphilium cryptum JF-5]
 gi|146400257|gb|ABQ28792.1| MCP methyltransferase, CheR-type [Acidiphilium cryptum JF-5]
          Length = 1445

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            ++TF +VT+   A  AL    +   +A   K+ F+  VS++LR PL  I    +LL  + 
Sbjct: 838  VVTFADVTEQKLAASALEAARQQAEQATLAKSRFLAAVSHDLRQPLQTIALLQELLTETT 897

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             G         ++ I  +++++  ++N +LD+  ++AG +K+  ST  ++++L ++    
Sbjct: 898  SGK---AALGLIQQIKQTTSVMAGMLNTLLDINQIEAGTVKVTVSTFAVDEILRDLHDEF 954

Query: 659  ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +  E N++++V+    +    +DR  L Q+   +LSNA+ ++  G  ++L   R +G 
Sbjct: 955  HFQAEERNVQLRVVDSTVV--IASDRALLKQMLRNLLSNAIKYTQSGR-ILLGCRRRHGG 1011

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                V + G  IPE    ++F+    + N  R + RG+GLGL+IV     L G  + + S
Sbjct: 1012 LSIEVWDTGVGIPEPEWTAIFDEHYQIDNPARERGRGLGLGLAIVRRVGELLGHPIELRS 1071


>gi|322643371|gb|EFY39935.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
          Length = 802

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|300867145|ref|ZP_07111810.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300334846|emb|CBN56976.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 886

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 11/250 (4%)

Query: 536 AQTMLTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            Q   +F  +   V+   A LT   EA   A++ K+ F+ ++S+ELR+PL  I+G+  +L
Sbjct: 392 GQLRTSFTELETRVKERTAELTIAKEAADNANQAKSDFLANMSHELRTPLNGILGYAQIL 451

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +K  +L  K+   V  I    + LL L+ND+LDL+ ++A  ++L    I L   L  V
Sbjct: 452 GRAK--TLPEKERHGVSIIHQCGSHLLTLINDVLDLSKIEARKLELTPKAIHLPSFLQGV 509

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712
            +    +  +  I      D  L +  + D +RL Q+   +L NA+ F+ KGS T+ ++ 
Sbjct: 510 VEICRVRSDQKGIEFIYQPDINLPTGIITDEKRLRQVLLNLLGNAIKFTDKGSITLKVEV 569

Query: 713 ARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFIN 766
              N         F V + G  I  D    +F  F     R  Q  G GLGL+I +  + 
Sbjct: 570 IASNATMPLPQLKFQVLDTGVGIASDQVNKLFQEFEQVGDRKRQAEGTGLGLAISQKIVE 629

Query: 767 LHGGHVSISS 776
           L GG + + S
Sbjct: 630 LMGGKIEVES 639


>gi|256844017|ref|ZP_05549504.1| two-component system sensor [Lactobacillus crispatus 125-2-CHN]
 gi|293380701|ref|ZP_06626750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Lactobacillus crispatus 214-1]
 gi|295693700|ref|YP_003602310.1| sensor protein [Lactobacillus crispatus ST1]
 gi|256613922|gb|EEU19124.1| two-component system sensor [Lactobacillus crispatus 125-2-CHN]
 gi|290922741|gb|EFD99694.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Lactobacillus crispatus 214-1]
 gi|295031806|emb|CBL51285.1| Sensor protein [Lactobacillus crispatus ST1]
          Length = 384

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  ++ K+  + +VS+++R+PLT+IIG+  LLK       + K+   + Y  A    +  
Sbjct: 148 RAIEQSKDELITNVSHDIRTPLTSIIGYLGLLKAGVTSPEDQKKYVNIAYTKAEQ--MKA 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L ND+ +  T+ +   KLN + + +  +L +V      +  +N I I++ +  K  +  A
Sbjct: 206 LANDLFEYTTLKSTNTKLNLNDLHIYSMLEQVAAGFELEAEKNGIEIEIEARPKNLTIKA 265

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D ++L+++++ ++SNA  + +  + + L A   N   +   V+NNG+ IP+     +F R
Sbjct: 266 DAEKLVRVYNNLISNAFKYGTGATKIKLVANLVNKREVELRVENNGAPIPKKSLNKIFER 325

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGLSI +  ++LH G +    S+E  T+   R+P
Sbjct: 326 FYRVETSRNTKTGGTGLGLSITKGVVDLHHGTIR-CESNEKWTSFIIRLP 374


>gi|224585125|ref|YP_002638924.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469653|gb|ACN47483.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 788

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 127/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +   +L ++Q +Y
Sbjct: 274 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---NLTAEQEKY 330

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 331 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 390

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 391 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 440

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 441 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 500

Query: 776 S 776
           S
Sbjct: 501 S 501


>gi|222149462|ref|YP_002550419.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium vitis S4]
 gi|221736445|gb|ACM37408.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium vitis S4]
          Length = 1282

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 116/537 (21%), Positives = 231/537 (43%), Gaps = 72/537 (13%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHN---RSFVELWEIDLAFLATN--------PSNDELLEFL 359
           IL  + V + I D ++ L F N   R+ V  W  D A   T+         +N   LE  
Sbjct: 434 ILRTMPVGVIILDADQSLSFSNLMARNMV-CWPEDQAMTGTSFADYLRHAHANGWPLETG 492

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGGTIWMFE 417
             A+  P+ ++ ++ +   +S+   + T      +      H+++T++P   G  +  F 
Sbjct: 493 DDASLNPDSIDPES-RIAAYSLELRTLTAARQTEVTLSDRRHIVITASPLDDGQIMLTFS 551

Query: 418 NLTVQV-------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           + T Q        +   +   + K+  E   H+++G+ V   D RI   N     +    
Sbjct: 552 DYTEQRLREREIDEARARLQDVGKLLEEATQHMAQGLCVIQTD-RILYRNDKLAEILNVS 610

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-- 528
            + +  G   R +   C+   +       F    T+F D  +S + + +  +  V++   
Sbjct: 611 PHLVRTGADWRQLFDYCAERGD-------FGDNPTAFLDRMRS-RMSADTSASVVVQRRD 662

Query: 529 ----SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
               SI  + +A+    FV  + +++ + E  LT        AD+ K+ F+ ++S+E+R+
Sbjct: 663 GAWRSIEAIVSAEDRWLFVISDASEAKQREAELTTLAAQAEAADKAKSRFLANMSHEIRT 722

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P++ ++G T+LL +S   +L+++Q  +V+ I  S   LL ++NDI+D + +D G + L  
Sbjct: 723 PMSGVLGMTELLLSS---NLDARQKTFVDVIVKSGRSLLTIINDIIDFSKIDDGSLSLRS 779

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDF 701
           +       + +V   +A +  E ++ I V   G+L   +A D  R  QI + +L  A+  
Sbjct: 780 APFDPLAAVEDVVTLMAGRAAEKDVDILVRGQGRLTHMLAGDAGRFRQILTNLLGEAIRA 839

Query: 702 SSKGSTVILKAARD-----------NGD----------------FIFSVKNNGSSIPEDM 734
           + +G  ++    R            +GD                 +  +++ G  +  + 
Sbjct: 840 TDRGHVLVDLGLRQEEPDLDVTLQSHGDPISETNAEVSDRARAWLVLRIEDTGHGMTPEQ 899

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           C   F +F  +++     R G GLG SI    ++L GG + + S+     T+   +P
Sbjct: 900 CLMAFTKFSQMNDGALHHRDGAGLGFSIAGGLVDLFGGTIGVESAPGRGATVTVNLP 956


>gi|220909068|ref|YP_002484379.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865679|gb|ACL46018.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 998

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 122/237 (51%), Gaps = 12/237 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV-- 610
           +AL    +A   A++ K++F+ ++S+ELR+PL  +IG++D+L        + ++S Y+  
Sbjct: 488 QALDLARDAAEAANKAKSTFLANMSHELRTPLNAVIGYSDMLME------DLEESDYLPD 541

Query: 611 -EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I+++   LL L+N +LDL+ ++AG M+L      +N+L+  V   +   M +N+ R 
Sbjct: 542 LQKINSAGKHLLELINAVLDLSKIEAGKMELYLEEFNINELVQGVAALVKPLMDKNHNRF 601

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +     LG   AD  ++ Q    +LSNA  F+  G+  +     D     F + + G  
Sbjct: 602 ALQIPDTLGKMTADATKVRQSLLNLLSNASKFTKAGTVTLNVWIDDTQRVFFQISDTGIG 661

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +  +    +F  F    +   R   G GLGL+I   F  + GG +++ +S+ GV ++
Sbjct: 662 MSPEQLDKLFQEFTQADNSTTRNYGGTGLGLAISRRFCRMMGGDITV-TSEPGVGSV 717


>gi|153932079|ref|YP_001382738.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|153934988|ref|YP_001386289.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|152928123|gb|ABS33623.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152930902|gb|ABS36401.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 615

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 121/231 (52%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++   F+ ++S+EL++PL  I     LL   +      KQ +Y++ I  +   L+ 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMK 415

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD   +D+G +KLN     + +L+ E+  S+ +      I I   ++ +      
Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741
           D  ++ +I   +LSN++ F++ G  + +   +D G+ ++  VK+ G  IP D  +S+F R
Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGNIFVN-VKDCGENVYVHVKDTGVGIPSDKLESIFER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  V    +  + G G+GL +V+SF+ +H G V I S     T    ++P+
Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVHIKSELGQGTEFIIKLPA 585


>gi|149189985|ref|ZP_01868263.1| putative histidine kinase [Vibrio shilonii AK1]
 gi|148836151|gb|EDL53110.1| putative histidine kinase [Vibrio shilonii AK1]
          Length = 508

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 115/196 (58%), Gaps = 8/196 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +  E  ++A++ K++F+ ++S+E+R+PL  I+G T++L  SKL ++   Q  Y+ 
Sbjct: 301 EKQLIDAREHEKQANQAKSTFLANMSHEIRTPLNGILGMTEILGDSKLSAI---QKDYLT 357

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ASS  LL L+NDILDL+ +++G +++   T  + + + +    IA K  +  I I +
Sbjct: 358 TINASSQTLLMLINDILDLSKIESGHLEICPHTTAIKETIFDTAALIAPKAQQKQIDILI 417

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNN 726
             D ++  +V AD Q++ Q    + SNA+ F+  GS   ++ L+A  ++   I FS+++ 
Sbjct: 418 DIDPEIPDYVKADEQKVRQTLMNLASNAIKFTETGSIAFSLKLRAQTEDSVTIGFSIQDT 477

Query: 727 GSSIPEDMCKSVFNRF 742
           G  I E   K +F  F
Sbjct: 478 GIGIDEKKQKHIFEEF 493


>gi|30021337|ref|NP_832968.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29896891|gb|AAP10169.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 458

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 346 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 457


>gi|77360565|ref|YP_340140.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875476|emb|CAI86697.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1019

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 139/270 (51%), Gaps = 30/270 (11%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTN 586
           I  L N Q  L  VN T  ++  +   E   A+ +A    + K+ FV ++S+E+R+P+  
Sbjct: 473 ISSLKNIQAELEGVNTTLELKVSQRTRELERAIDEALAASQAKSDFVANISHEIRTPMNG 532

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL-NYS-- 643
           ++G  ++LK      L+ +Q  Y++  ++S+  L+NL+NDILD + ++AG + + N+S  
Sbjct: 533 VLGMLEMLKED---GLSEQQHHYLKLANSSANSLMNLINDILDFSKIEAGKLDIDNHSFD 589

Query: 644 -TIVLNDLLNEV-----KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
              V +D++N +     ++ +   +H +NI  +++        V D  RL QI   +++N
Sbjct: 590 VVTVCSDMINSLALQGQRKGLEVFLHTHNIVDRMV--------VGDSHRLKQILINLVNN 641

Query: 698 AMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           A  F+ KG   +   ++   D      F+VK+ G  I  +    +F  F        R  
Sbjct: 642 AFKFTHKGEVSLTIGSKYITDTKLQMSFAVKDTGIGIAAENIDKLFEVFTQEDSSTTRHF 701

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            G GLGLSI +    L GG++S+ +S++GV
Sbjct: 702 GGTGLGLSICKKLAQLMGGNISL-TSEKGV 730


>gi|56475528|ref|YP_157117.1| fusion Na-dependent permease/histidine kinase domain-containing
           protein [Aromatoleum aromaticum EbN1]
 gi|56311571|emb|CAI06216.1| Fusion protein of probable Na-dependent permease domain and
           histidine kinase domain of putative two-component sensor
           [Aromatoleum aromaticum EbN1]
          Length = 918

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 5/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +S  AE  L   NE L++ D +K+ F+  VS+ELR+PLT+I  F+++L      +L  + 
Sbjct: 664 ESATAE--LRAANERLKELDRLKDDFMSSVSHELRTPLTSIRAFSEMLLDDPDIALPDRM 721

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I + +  L  LVN +LDLA +++G  + + S I +  L+ +   + A    +  
Sbjct: 722 -RFLGIIVSETERLTRLVNQVLDLAKIESGHAEWHNSDIDMRALVEQAVDTTAQLFRDRG 780

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKN 725
             ++++   +     AD  RL+Q+   +LSNA  F  +G+  I  A + + G     V +
Sbjct: 781 ATVELVLPDEAPHLKADHDRLVQVMLNLLSNAAKFVPQGAGRIRVALKSEAGQVRVEVSD 840

Query: 726 NGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           NG  IP ++   +F +F      R + +G GLGL I    +   GG + + S     T  
Sbjct: 841 NGPGIPPELHGVIFEKFRQGGDERSRPQGTGLGLPISRQIVEHFGGRLWVESPPGHGTVF 900

Query: 785 NCRIP 789
              +P
Sbjct: 901 TFVLP 905


>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
            wolfei subsp. wolfei str. Goettingen]
 gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
            wolfei str. Goettingen]
          Length = 1442

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 12/233 (5%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E+ L +  E    A+  K+ F+ ++S+E+R+P+  I+GF +LL  ++   L+++Q  YV+
Sbjct: 802  EQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLGETE---LSTEQQDYVQ 858

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK- 670
                +S ILL L+NDILD + ++AG + +      +  ++ +     A K  E  + +  
Sbjct: 859  EAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVSLQAPKAREKGLEMHT 918

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
            +I        V D  RL QI + +LSNA+ F+  G  ++    +  + D  +  F V ++
Sbjct: 919  LIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHTGEILVIVETINESSDKAEIAFEVSDS 978

Query: 727  GSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  I PEDM K +F  F        R+  G GLGL+I    + L  G + + S
Sbjct: 979  GIGIAPEDMEK-LFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKS 1030


>gi|312890877|ref|ZP_07750406.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311296660|gb|EFQ73800.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 818

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 133/266 (50%), Gaps = 18/266 (6%)

Query: 532 PLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           PL + Q  LT      +++T   R E  L E  +   ++   K  F+ ++S+E+R+P+  
Sbjct: 278 PLYDDQKKLTGSIGIHLDITGQKRLESDLIEAKKIAEESSRAKEIFLANMSHEIRTPINA 337

Query: 587 IIGFTDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           I+G + LL KT++    NS+Q  Y E I  S+  L+ ++NDILDL  ++AG +++     
Sbjct: 338 ILGLSRLLTKTTQ----NSQQRTYTEAIIKSAENLIVIINDILDLTKIEAGQIQIENIEF 393

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
            L DL+ +++  +  K  E  +     +   +    + D  R+ Q+   ++ NA+ F+ K
Sbjct: 394 NLADLIKQLEGVLRYKTEEKGLEFDATTSVHVPPVLMGDPYRINQVLLNLVGNAIKFTEK 453

Query: 705 GSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           G   +    +   +D  +  F+VK+ G  +  +  K +F  F        R+  G GLGL
Sbjct: 454 GGIEVWCKLVDQQKDVNEIQFTVKDTGVGMEPEYLKHIFTNFSQEDASITRKHGGTGLGL 513

Query: 759 SIVESFINLHGGHVSISSSDEGVTTI 784
           SI    + L GG + + S+ +G+ T+
Sbjct: 514 SISRQLVELMGGKIHVEST-KGLGTV 538


>gi|315500524|ref|YP_004089326.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315418536|gb|ADU15175.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 644

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 7/242 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R+E AL    E    A+  K+ F+   S+ELR+P++ I+GF  LL+  +  +L+
Sbjct: 388 DMTERRRSEEALRMAREDAIAANLAKSEFLSRTSHELRTPMSAILGFGQLLELDE-ETLS 446

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     V+ I  +   LL+L+ND+LD+++++AG   ++   + L+D++ EV    A  + 
Sbjct: 447 TPHRAAVQQIMKAGRHLLSLINDLLDISSIEAGATDMSIEAVDLDDVVQEVHALAAPIVA 506

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
              +  ++  D      +A  DR+RL+Q+   +++NA  ++  G+ V L   R   D   
Sbjct: 507 TGGLSFQL--DAAEPGLIAQADRRRLIQVLLNLIANAAKYNRTGTCVRLAYGRKGDDIRI 564

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V+++G  I       +F  F     + + R  G GLGL++ +  +    G +   +  +
Sbjct: 565 EVEDDGEGIDPSAASRLFTPFDRLGQQSKTRVEGTGLGLALSKRLVESMSGEIGYEAPAQ 624

Query: 780 GV 781
           G 
Sbjct: 625 GA 626


>gi|165925853|ref|ZP_02221685.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|229896495|ref|ZP_04511663.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Pestoides A]
 gi|165922465|gb|EDR39642.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|229700569|gb|EEO88600.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Pestoides A]
          Length = 924

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|146337386|ref|YP_001202434.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146190192|emb|CAL74184.1| Putative Sensor histidine kinase with PAS and Response regulator
           receiver domains [Bradyrhizobium sp. ORS278]
          Length = 754

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD    ERAL +  +    A+  K+ F+   S+E+R+PL  I+G   LL  + L    
Sbjct: 209 DVTDRTETERALADARDQANAANRAKSRFLAMASHEIRTPLNGILGMGGLLLETPL---T 265

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ Y + + AS   L++L+N++LD + ++AG + L      L  L+ E+ + +A +  
Sbjct: 266 PEQTTYAKAVRASGEALMSLINELLDYSKIEAGKLALEAQPFSLAALIEEITELLAPRAQ 325

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721
              + I    D +L ++V  D  RL Q+   +  NA+ F++KG   VI +      +  F
Sbjct: 326 AKQLEIAAYMDERLPTWVTGDAARLRQVLLNLAGNAIKFTAKGGVAVIAEPGIWPNEISF 385

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  I  +  + +F  F        R   G GLGL+I +  +   GG +S+ S   
Sbjct: 386 QVRDTGIGIAAEAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRISLQSEPG 445

Query: 780 GVTTINCRIP 789
              T    +P
Sbjct: 446 AGATFEVCVP 455


>gi|62181836|ref|YP_218253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129469|gb|AAX67172.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716325|gb|EFZ07896.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 778

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 127/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +   +L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---NLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Anabaena variabilis ATCC 29413]
          Length = 1399

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 5/233 (2%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            EA   A+  K+ F+  +S+ELR+PL  I+G+  LL T +L +     +Q +E I  S+  
Sbjct: 1006 EAAETANRAKDEFLSILSHELRNPLNTILGWASLLSTHQLEA--DTVNQGLEAIERSAQA 1063

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
              +L++D+LD++ + +G ++++   I L  ++      +       NI I+   D    +
Sbjct: 1064 QAHLISDLLDVSRISSGRLRMDAQPIELIPIIEAAIAVVRLAAEAKNIHIETQLDPTQKT 1123

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             V D  RL Q+   +LSNA+ F+     + +     +      + + G  I  D    +F
Sbjct: 1124 IVGDPIRLQQVIWNLLSNAIKFTPVRGRIDITLEYTDFHAQIQISDTGQGISPDFLPFIF 1183

Query: 740  NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
             RF     +      G+GLGLSIV   + LHGG V+  S  EG+  T   R+P
Sbjct: 1184 ERFRQADGSRTRSNTGLGLGLSIVRHLVELHGGTVAAQSPGEGLGATFTIRLP 1236


>gi|291515872|emb|CBK65082.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 623

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 9/242 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   +++++K++F+ ++S+E+R+PL  I+GF++LL      S +  + +Y +
Sbjct: 390 EEELREAKKRAEESNKLKSAFLANMSHEIRTPLNAIVGFSELLADE---SRHETRREYTD 446

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++T+LL +++D+LDLA +++G   +  +     DL  EV  S+  +     + ++V
Sbjct: 447 IILRNNTLLLQIISDVLDLARIESGRTDIERTQFDARDLCREVADSLRLQ-RRPGVELRV 505

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI- 730
                       R+ L Q+ +    NA+ F+ KGS V +   R  G   F V++ G  I 
Sbjct: 506 EEGLPEFPVTEYRKGLAQVLNNFTRNALKFTEKGS-VTIGFRRIPGHIRFYVRDTGIGIA 564

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           PED  + +F RFV      Q  G GLGLSI +S     GG V + S     +     IP+
Sbjct: 565 PEDR-ERIFERFVKLDTFTQ--GTGLGLSICKSIAEQLGGSVGVDSVAGEGSCFRIDIPA 621

Query: 791 KE 792
            E
Sbjct: 622 GE 623


>gi|326443818|ref|ZP_08218552.1| putative two-component system sensor kinase [Streptomyces
            clavuligerus ATCC 27064]
          Length = 1763

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 1296 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNPETNLSPKQVEFA 1355

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1356 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1415

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  GS   VI  +  D            
Sbjct: 1416 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSGADVPQSIREQLLEV 1475

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  +G  I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1476 GSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1535

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1536 LLGGEIHAASEPGRGSTFTLYLP 1558


>gi|168177696|ref|ZP_02612360.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671026|gb|EDT83000.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 464

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D++KN F+  VS+ELR+PLT+I G+   L ++++     K    ++ I   S  L  +
Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G MKLN   I + ++++ V++ +    + N I  K     KL +   D
Sbjct: 297 VEELLDFSKFVSGKMKLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R R+ Q+   +L NA  F+ +G  V L    +       VK+ G  I ++    V  +F 
Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G+ +  G+GLSI +  I LH G + I S +   TTI+ ++P
Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|197122092|ref|YP_002134043.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196171941|gb|ACG72914.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 844

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +ALR AD  K  F+  +S+ELR+PL  I     LL  +  G   +++++ V  I   +
Sbjct: 459 REQALRDADRRKTDFLAVLSHELRNPLAPIRNAVYLLHHAPPGGPQAERARAV--IERQA 516

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  LV+D+LDL+ V+ G + L  + +   +++      +     E    + +  D + 
Sbjct: 517 DHLAKLVDDLLDLSRVNFGKIALQRTVLDAREVVRRTCDDLRPLFDERGPALHLDLDDQP 576

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               AD  RL QI   +L+NA  F+  G  V +    + G  +  V++ G  I   + ++
Sbjct: 577 VWVDADPTRLAQIAGNLLTNAAKFTPPGGRVAVTVRAEGGSCVLRVRDTGVGIDPGLLEA 636

Query: 738 VFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +F  F + A R +   R G+G+GLS+V S + +HGG V   S   G
Sbjct: 637 IFEPF-AQAERTRWTARGGMGIGLSLVRSLVGMHGGTVVARSEGAG 681


>gi|16125314|ref|NP_419878.1| sensor histidine kinase [Caulobacter crescentus CB15]
 gi|221234052|ref|YP_002516488.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|13422360|gb|AAK23046.1| sensor histidine kinase [Caulobacter crescentus CB15]
 gi|220963224|gb|ACL94580.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 263

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 3/215 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624
           +E K SF++ VS+ELR+PL  +IGF+++L     G L S Q  +Y   +  S   LL LV
Sbjct: 35  EERKRSFLRMVSHELRTPLNAVIGFSEILSQELYGPLGSPQYREYATIVHDSGLKLLKLV 94

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N I++LA ++     +  +   L++ + +V  S+  ++   ++ + V+  G L S  AD 
Sbjct: 95  NQIVELARLEGQASDIEMTPESLDEAIEDVVDSLRAEIARRDVIVHVVGAGALPSVQADS 154

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           + L  + + +L NA+  S  G  + + AAR +G+   ++++ G  +       +   F  
Sbjct: 155 RGLRTMLTNLLQNAVTHSPAGGVIHVTAARVDGEIEIAIRDQGPGVESAELPRLLQPFEQ 214

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
                 R   G GLGL IV+      GG + +SSS
Sbjct: 215 GGCALTRTHEGAGLGLPIVDLLSRAMGGQLKLSSS 249


>gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 585

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++++  F+ +VS+EL++P+T+I GF++ L     G++ +++    ++  I   S  
Sbjct: 354 LKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GAMKNQKFCEHFLHIILKESER 410

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L+ D+LDL+ ++    KLN   + + DLL ++K  +  K  +  I +++ +   + S
Sbjct: 411 MQDLIEDLLDLSKIEQQGFKLNMGNVDIKDLLEDIKMVLDKKAQDKEIVLQMDAMQHV-S 469

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL QIF  ++ NA+ ++  G TV +    D  +    V + G  I ++    +F
Sbjct: 470 VIGDSSRLKQIFINLVHNAIIYTPVGGTVSVSLFEDEQNAYVQVADTGIGISKEEIPRIF 529

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGLSIV+  +  H G +++ S     T     +P
Sbjct: 530 ERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGMITVESKVGEGTMFTVALP 581


>gi|302133086|ref|ZP_07259076.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 998

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +   N +     +
Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRR 579

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 639

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   S   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  D +F V ++G 
Sbjct: 640 LNCTSAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGI 698

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP      +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 699 GIPAQHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 757

Query: 789 P 789
           P
Sbjct: 758 P 758


>gi|300022887|ref|YP_003755498.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299524708|gb|ADJ23177.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1897

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RA+ EK   L      K+ F+ ++S+ELR+PL +I+     L  +   +L+ +Q ++
Sbjct: 1211 QARRAVEEKAAELALTSRYKSEFLANMSHELRTPLNSILILGQQLSDNPDRNLSERQVEF 1270

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  + T LLNL++DILDL+ +++G + +N   +  N +L  + +    +    ++  
Sbjct: 1271 ARTIHGAGTDLLNLISDILDLSKIESGTVSVNAEDVSFNAVLEAIARPFRHEAERRDLAF 1330

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGD------- 718
            ++  D  LG +   D +RL Q+   +LSNA  F+ +G    +V   A +   D       
Sbjct: 1331 EMSFDADLGRTLFTDSKRLQQVLKNLLSNAFKFTREGYVRLSVKPAATKWGPDHPTLAEA 1390

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F V ++G  IP D  K +F  F        R+  G GLGL+I     +L GG + 
Sbjct: 1391 QTVVAFEVDDSGIGIPLDKQKIIFEAFQQADASTSRKYGGTGLGLAISRELAHLLGGEIQ 1450

Query: 774  ISSSDEGVTTINCRIP 789
            + S     +T    IP
Sbjct: 1451 LRSEPGRGSTFTLYIP 1466


>gi|205354229|ref|YP_002228030.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858576|ref|YP_002245227.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|205274010|emb|CAR39016.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206710379|emb|CAR34737.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326629351|gb|EGE35694.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 778

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|170701268|ref|ZP_02892235.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
 gi|170133827|gb|EDT02188.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
          Length = 1276

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 16/217 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  ++G T+LL+ ++L    SKQ ++V+ +  S   LL +++DIL
Sbjct: 563 KSDFLARMSHEIRTPMNGVLGMTELLQRTRL---TSKQRKFVDTVYRSGQTLLVIIDDIL 619

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682
           D + ++AG + L      L+ LL++V       + E N R K +      +D        
Sbjct: 620 DFSKIEAGKLTLERIDFNLHQLLDDV-----VALMEPNARRKELELVYQRADSVPQRMRG 674

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI + +L NA+ F+  G   +  A  D+G  +F + ++G  I  D+   +F  F
Sbjct: 675 DPVRLRQILTNLLGNAIKFTEHGHVGLSAAYSDDGRIVFKIADSGIGIAPDVAAQLFRPF 734

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
                   R+  G GLGL I      + GG +++ S+
Sbjct: 735 QQADSSTARKYGGTGLGLVISRQLAEMMGGTLTLDST 771


>gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 403

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 129/243 (53%), Gaps = 5/243 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  +A  +A+ +K+ F+ ++S+ELR+P+  IIG+++LLK        +     ++ I
Sbjct: 156 ALQKAKQAAEEANSVKSQFMANISHELRTPMNAIIGYSELLKEEAEDLQITGLVDDIDNI 215

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL+++ND+LD + ++ G M L+     +  L+N++K  +   +      +++  
Sbjct: 216 EKAGRHLLDIINDVLDFSKIETGKMTLSLENFEILILINDIKMIVQPLVKNQLNHLEIDC 275

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI-FSVKNNGSSI 730
              +G+  AD  ++ +I   +LSNA  F+  G+   ++ K + +N  +I F V + G  I
Sbjct: 276 ADNIGAMYADLSKVRRILLNLLSNASKFTENGTIKLIVSKESEENTQWIKFKVNDTGIGI 335

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  + +F+ F        R+  G+G+GL++ + F+++  G + + S     +T   R+
Sbjct: 336 TDEQQQQIFHTFTQADGSSTRKYGGIGMGLTVTKRFVDIMQGTIHVESQLGQGSTFTVRL 395

Query: 789 PSK 791
           P K
Sbjct: 396 PIK 398


>gi|56965767|ref|YP_177501.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56912013|dbj|BAD66540.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 472

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 10/238 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +  E  ++L + D  +N+F+ +V++ELR+PL+ +IG+ + ++   +     ++++ +  I
Sbjct: 228 SFNELAKSLEQVDRERNAFLANVAHELRTPLSYMIGYAEGIQEGVI-----ERNKGMAVI 282

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L  LVND+LDLA ++    +L+   +   +L  E   + A +  + +I++++  
Sbjct: 283 EKEAKRLDRLVNDLLDLAQLEGSDYRLDKEALPFAELAREAVAAFAWQAEQKHIQLELEL 342

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D    S + AD  R+ Q+ + +L+NA+ +S   +TV ++    NG     V++ G+ IPE
Sbjct: 343 DED--SIIDADWDRMQQVLTNLLANAIAYSPPFTTVTVRITSSNGWAEMVVEDEGAGIPE 400

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               SV  RF  V      Q  G GLGL+IV+  +  HGG   + S +   T    RI
Sbjct: 401 ADLSSVQKRFYRVKKGRSRQNGGTGLGLAIVQEIVAKHGGDFQLVSQEGKGTKAIIRI 458


>gi|323138654|ref|ZP_08073721.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322396142|gb|EFX98676.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 780

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 123/237 (51%), Gaps = 9/237 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASS 617
            EALR+AD+ K+ F+  +++ELR+PL  +     +L+    G L+ +Q  +        +
Sbjct: 406 EEALREADQRKDEFLATLAHELRNPLAPLRNAIRVLRRDA-GRLSEEQRGELFAMFDRQT 464

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ LV+D+L+++ +  G + L    + L  +L    ++    +      +++ +  + 
Sbjct: 465 EHLVRLVDDLLEVSRITRGKIDLRKERVDLATILRNAIETSRPAIERGGHELRIDAGAER 524

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               AD  RL Q+FS +L+NA  ++  G ++ L   R   + + SV+++G  IP +M   
Sbjct: 525 LILDADPVRLAQVFSNLLNNAAKYTEHGGSIALTVERRGDEAVVSVRDSGVGIPPEMAPR 584

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV---TTINCRIP 789
           VF+ F  V       + G+G+GL++V + + +HGG  S+ +  EG+   TT   R+P
Sbjct: 585 VFDIFTQVDRTLGRSQGGLGIGLALVRNLLEMHGG--SVEAHSEGLGRGTTFVVRLP 639


>gi|229097706|ref|ZP_04228661.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29]
 gi|228685651|gb|EEL39574.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29]
          Length = 448

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G TV           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGMEKEGMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELP 447


>gi|16762090|ref|NP_457707.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143579|ref|NP_806921.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213053137|ref|ZP_03346015.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213857504|ref|ZP_03384475.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289826616|ref|ZP_06545638.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25301091|pir||AG0906 aerobic respiration control sensor protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504393|emb|CAD07845.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139214|gb|AAO70781.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 778

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|325684431|gb|EGD26597.1| sensor histidine kinase [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 521

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L   NE ++  +E ++ F+Q V++E+R+PLT I G  + +K   +   +  +S  ++ 
Sbjct: 265 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 322

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  L+ LVN+ LD   + +G +++  S      ++N+V+Q +     +N  +I + 
Sbjct: 323 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNARTIMNDVQQQLTQNAAKNGDKIILD 382

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L  + AD+ R  Q+   +  NA+ F++ G T+ L+  R      FSV++ G  + +
Sbjct: 383 APEDLPIY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRFQHGATFSVQDTGIGMTQ 440

Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
           +  K +F RF     + A  G     GLGLSIV S +  HGG +  IS   EG T
Sbjct: 441 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIKVISKPHEGST 495


>gi|303247235|ref|ZP_07333509.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491394|gb|EFL51282.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1136

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 163/389 (41%), Gaps = 62/389 (15%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL----------------- 466
           D E KY TL+         + +G  V G D RI  SNPAFR +                 
Sbjct: 483 DSEAKYRTLLA-------SMRDGFVVIGKDNRIMESNPAFREMLGYSREELNGLTTLDIT 535

Query: 467 ---WKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              W+  EE  L      +  +    + Y   DG    AA+          LQ       
Sbjct: 536 PERWQAPEEAVLRTAVDTQGFSGIFEKEYRRKDGSVFPAAL---------RLQRYPSRGD 586

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D+   ++I+            +VT+    E  L    EA   A+  K+ F+  +S+++R+
Sbjct: 587 DARRYFAIV-----------RDVTEDKAIEADLRAAKEAAETANRAKSDFLAKMSHDIRT 635

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  +IG T+L   +    L+ +Q   +E    S+  LL L+NDILD++ ++A  ++L  
Sbjct: 636 PLNAVIGMTELTLDT---PLSHQQRDALETARESAASLLALINDILDISRIEARKLELAS 692

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
               L   L  + +S+  +  +  +R+ +    +   FV  D  RL QI   ++ N + F
Sbjct: 693 DVFDLRRTLAGITRSMRAQAKDKGLRLALAIAPRTPRFVTGDPVRLRQILLNLVGNGIKF 752

Query: 702 SSKGSTVIL------KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + +GS  ++      +A  D    I F+V + G  I  +  + +F+ F        R+  
Sbjct: 753 TDQGSVSLIVGPDTGQAKPDGATAIAFTVSDTGIGIESERLEGIFDMFAQADASITRQYG 812

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           G GLGL+I      L GG + ++ S  G 
Sbjct: 813 GTGLGLAICRELARLMGGCI-VAESRPGA 840


>gi|229110656|ref|ZP_04240220.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15]
 gi|228672724|gb|EEL28004.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15]
          Length = 448

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 447


>gi|316931702|ref|YP_004106684.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315599416|gb|ADU41951.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 640

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 7/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A   ++  +   S+E+R+PL  IIG + LL  +   SL ++Q+ Y   +  S   LL L
Sbjct: 122 PASRARSRLLAMASHEIRTPLNGIIGMSQLLLDT---SLTAEQTTYARAVKTSGEALLAL 178

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVA 682
            +++LD A V+AG ++L+    VL +L+ +V + +A +     + I    D +L  S + 
Sbjct: 179 TDELLDNARVEAGKIELDRCPFVLGNLIEDVVELLAPRAQARGLEIAADIDERLPASLIG 238

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  RL Q+   +  NA+ F+  G   +     D   +F   V++ G  I  D    +F  
Sbjct: 239 DAARLRQVLLNLCGNAIKFTEAGGVTLTAEPGDQAAEFRLIVRDTGIGIAPDAQARIFRE 298

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        R   G GLGLSI +  +   GG +++ S+    TT    +P
Sbjct: 299 FEQADADIARHFGGTGLGLSISDRIVAAMGGRIALDSTPGQGTTFTVTLP 348


>gi|254884267|ref|ZP_05256977.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1467

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G    V +  + D+      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            RF    NA     +G G+GL++ +  I+LH G +  + S EG
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEI-YAESPEG 1152


>gi|255036012|ref|YP_003086633.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254948768|gb|ACT93468.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1084

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 149/306 (48%), Gaps = 35/306 (11%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           I+   A   R++  SDG   + + ITS   DE  +L G L+++ D               
Sbjct: 661 IQEGRAENERWHLRSDGSRFYGSGITSPLLDEAGNLIGLLKVMRD--------------- 705

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            LT    TD            EAL+ AD+ K+ F+  +++ELR+PL  +     LLK ++
Sbjct: 706 -LTMQKQTD------------EALKIADKRKDEFLAMLAHELRNPLATVRNGISLLKVTR 752

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               +++ S  V+ +   +T L+ +++D+LD++ V  G ++L    + +  L+N   +SI
Sbjct: 753 QN--DAQMSDVVDMMDRQATHLVRMIDDLLDVSRVTQGKIQLQLERLDMAALINSAVKSI 810

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            ++ +E   ++  +  G     V  D  RL Q+ + +L+N++ ++     V +     +G
Sbjct: 811 RSQ-YEARRKVLDVQTGFAKLIVEGDATRLSQVVTNLLTNSLRYTGDEGHVWVTLTSQDG 869

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           + +  V++NG  +  +   SVF  FV   N+    + G+G+GL+IV   + +HGG V   
Sbjct: 870 EAVIRVRDNGIGLTPEQQTSVFELFVQGDNSLARTQGGLGIGLTIVRQLVGMHGGRVEAK 929

Query: 776 SSDEGV 781
           S   G+
Sbjct: 930 SPGIGM 935


>gi|47096765|ref|ZP_00234348.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|224503625|ref|ZP_03671932.1| hypothetical protein LmonFR_14163 [Listeria monocytogenes FSL
           R2-561]
 gi|254900964|ref|ZP_05260888.1| hypothetical protein LmonJ_14156 [Listeria monocytogenes J0161]
 gi|254913822|ref|ZP_05263834.1| sensor histidine kinase [Listeria monocytogenes J2818]
 gi|254938211|ref|ZP_05269908.1| sensor histidine kinase [Listeria monocytogenes F6900]
 gi|47014851|gb|EAL05801.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|258610823|gb|EEW23431.1| sensor histidine kinase [Listeria monocytogenes F6900]
 gi|293591839|gb|EFG00174.1| sensor histidine kinase [Listeria monocytogenes J2818]
          Length = 459

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L     ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D    ++  D + L Q++S +L+NA+ F+ +G  + ++   D  +    V+++G  I +
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISK 398

Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            DM K +F+RF  +N  R +  G  GLGLSI +  I LH G V++ SS E  TT   ++P
Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457


>gi|229128512|ref|ZP_04257490.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4]
 gi|228654705|gb|EEL10565.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4]
          Length = 448

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 447


>gi|75762154|ref|ZP_00742053.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218898302|ref|YP_002446713.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|74490357|gb|EAO53674.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542070|gb|ACK94464.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 458

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELP 457


>gi|302060794|ref|ZP_07252335.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato K40]
          Length = 1003

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +   N +     +
Sbjct: 529 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRR 584

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 585 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 644

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   S   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  D +F V ++G 
Sbjct: 645 LNCTSAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGI 703

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP      +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 704 GIPAQHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 762

Query: 789 P 789
           P
Sbjct: 763 P 763


>gi|71064923|ref|YP_263650.1| putative signal transduction histidine kinase sensor [Psychrobacter
           arcticus 273-4]
 gi|71037908|gb|AAZ18216.1| putative signal transduction histidine kinase sensor [Psychrobacter
           arcticus 273-4]
          Length = 1135

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 112/211 (53%), Gaps = 7/211 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+ ++S+ELR+PL +I GF +LL  ++ G LN +Q  YV+ I  SS  LL LVND
Sbjct: 305 QAKSAFLANISHELRTPLNSIDGFINLL--ARHGELNPEQDLYVQTIRKSSAHLLALVND 362

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           +LD + ++AG + L+     L D + +V   ++    E  +R+ V+    +   V  D  
Sbjct: 363 VLDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEKGLRMAVLFYNDVPMRVNGDAL 422

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFV 743
           RL Q+ + I+ NA+ F+  G  V+  +  D  D   + SV+++G  I     K +F  F 
Sbjct: 423 RLKQVLTNIVGNAIKFTDSGDVVVRVSLDDYQDNYLMISVQDSGKGISLSDQKMLFQSFS 482

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  R+  G GLGL I +    L GG +
Sbjct: 483 QGDPSITRQYGGTGLGLVISKQLTRLMGGDI 513


>gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 913

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 128/246 (52%), Gaps = 6/246 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N T   +  + L E  E    +D +K++F+ ++S+E+R+PL  I+GF++L+ +       
Sbjct: 528 NNTKWEKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSC---DDP 584

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y+  I +++ +LL L+NDILDL+ +++GI++       L+ + NE+   +  K+ 
Sbjct: 585 EEKEEYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKIT 644

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +++ + G       DR RL Q++   L+NA+  +  G  + +  + + G   F V
Sbjct: 645 NPEVELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG-YIKMGYSIEKGGIRFYV 703

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +++G  IP ++   VF RF       Q  G GLGL+I  + I    G V  SS     +T
Sbjct: 704 EDSGVGIPLEVQDRVFGRFQKLNEFAQ--GTGLGLAISRAIIEGADGKVGFSSVPGVGST 761

Query: 784 INCRIP 789
               IP
Sbjct: 762 FWAWIP 767


>gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074733|gb|ADJ64132.1| sensor histidine kinase/response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1145

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + +  L    EA   A+  K+ FV  +S+ELR+PL +I+G+  +L  
Sbjct: 656 QTNLLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHV 715

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               ++   +   +  I  S   LL+L++ +LD+A ++AG M+L    + L   L ++  
Sbjct: 716 D--ATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVG 773

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714
             A +  +  +  +    G+L   V AD++RL QI   +L NA+ F+  G  T+ L+ AR
Sbjct: 774 MFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAR 833

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +     F V + G  I +D  + +F  F  ++    R   G GLGL+I    +++ GG +
Sbjct: 834 EIA--YFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGEL 891

Query: 773 SISS 776
           S+ S
Sbjct: 892 SVQS 895


>gi|213969967|ref|ZP_03398100.1| bacteriophytochrome [Pseudomonas syringae pv. tomato T1]
 gi|301382239|ref|ZP_07230657.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato
           Max13]
 gi|213925292|gb|EEB58854.1| bacteriophytochrome [Pseudomonas syringae pv. tomato T1]
          Length = 998

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +   N +     +
Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRR 579

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIE 639

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   S   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A  D  D +F V ++G 
Sbjct: 640 LNCTSAQGL-VIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGI 698

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP      +F R+ S    G  RG GLGL I +  I  HGG +   SS +  +  +  +
Sbjct: 699 GIPAQHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTL 757

Query: 789 P 789
           P
Sbjct: 758 P 758


>gi|115351649|ref|YP_773488.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115281637|gb|ABI87154.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 705

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 16/217 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  ++G T+LL+ ++L    SKQ ++V+ +  S   LL +++DIL
Sbjct: 27  KSDFLARMSHEIRTPMNGVLGMTELLQRTRL---TSKQRKFVDTVYRSGQTLLVIIDDIL 83

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682
           D + ++AG + L      L+ LL++V       + E N + K +      +D        
Sbjct: 84  DFSKIEAGKLTLERIDFNLHQLLDDV-----VALMEPNAQRKELELVYQRADSVPQRMRG 138

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI + +L NA+ F+  G   +  A  D+G  +F + ++G  I  D+   +F  F
Sbjct: 139 DPVRLRQILTNLLGNAIKFTEHGHVALSAAYSDDGRIVFKIADSGIGIAPDVAAQLFRPF 198

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
                   R+  G GLGL I      + GG +++ S+
Sbjct: 199 QQADSSTARKYGGTGLGLVISRQLAEMMGGTLALDST 235


>gi|254295443|ref|YP_003061466.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254043974|gb|ACT60769.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 505

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 118/208 (56%), Gaps = 6/208 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F   VS+E+R+PL  I+G   LLK ++L  +   Q +YVE I  S + LL+L+N++LD +
Sbjct: 27  FTASVSHEIRTPLNGILGMVSLLKETELSLV---QKEYVEAIGKSGSRLLDLLNNVLDYS 83

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQI 690
            ++AG + L+ +    ++L+ +V + +A + H  N+ I    S G   SF+ D  R+ QI
Sbjct: 84  RLEAGDIPLDIAAFDPSELIQDVVELLAPRAHAANLDIAAAPSPGMPASFLGDAGRIRQI 143

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
              +  NA+ F+  G  ++      +G+ +F+V++ G+ IP+   + +F+ +  VS +  
Sbjct: 144 LFNLAGNAIKFTQAGGILVTARLATSGELVFAVRDTGAGIPKKDQEKIFSAYGQVSASDA 203

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776
           G+  GVGLGL+I +       G + ISS
Sbjct: 204 GKDSGVGLGLAIAQRLALAMKGRLHISS 231


>gi|291287080|ref|YP_003503896.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884240|gb|ADD67940.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1322

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 127/234 (54%), Gaps = 16/234 (6%)

Query: 555 LTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +TE  +A  KA+E    K+ F+ ++S+E+R+PL  ++GF +LLK +    L+S+Q++Y+ 
Sbjct: 697 ITELKQARAKAEESNRAKSMFLANMSHEIRTPLNGLMGFLELLKHT---PLDSEQAEYLS 753

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN-DLLNEVKQSIATKMHENNIRIK 670
            I  S+  LL ++NDILDL+ +++G+M +  S + L   +L+ VK   A K     +R+ 
Sbjct: 754 TIKFSADTLLKILNDILDLSKIESGMMDIESSEMNLGFQILSTVKAFYA-KASAKGVRLY 812

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVK 724
              D ++  S + D  R+ Q+ S +L+NA+ F+  G  + +     N        + +V+
Sbjct: 813 SYIDPQVPSSLLGDALRISQVVSNLLNNAVKFTHAGGVIKVNVELKNETKKTATVLIAVE 872

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  IP+   KSVF  F        R+  G GLGL+I  + + L    + + S
Sbjct: 873 DTGVGIPDGKIKSVFEPFAQVDSSVTRKYGGTGLGLTISRNLLKLMKSDIELKS 926


>gi|259415385|ref|ZP_05739306.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348615|gb|EEW60377.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 756

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 9/240 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT +   ER L E   A  +   IK  F+  +S+E R+P+  +IG T +L+ +    L+
Sbjct: 354 DVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMTQMLQAT---DLS 410

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  Y + I +SS  LL+L+ND+LDL+ ++A  + L      L+  + +  + ++++  
Sbjct: 411 EDQRLYADTILSSSRALLSLINDVLDLSRMNAAGVSLFNVDFDLHACVRDTARLLSSQAE 470

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720
           E  + + V  D  +  +V  D +RL QI   ++ NA+ F++ GS  I  +A  +GD I  
Sbjct: 471 EKQLALGVEIDPDVPVWVTGDDRRLRQILVNLVGNAVKFTTSGSVTIRLSAALSGDEIAL 530

Query: 721 -FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +V++ G  IP D    +F RF    NA   +  G GLGLSI        GG + ++S+
Sbjct: 531 SIAVEDTGIGIPADKLDCIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDIHVTST 590


>gi|228959448|ref|ZP_04121137.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228800224|gb|EEM47152.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 448

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVQVELP 447


>gi|229116715|ref|ZP_04246099.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3]
 gi|228666547|gb|EEL22005.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3]
          Length = 448

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G TV           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGMEKEGMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 447


>gi|229916169|ref|YP_002884815.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229467598|gb|ACQ69370.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 569

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D+++  FV ++S+ELR+PL  + G+++ +    +   +    ++   I   S  L  L
Sbjct: 338 RLDKMRTDFVANISHELRTPLVTLQGYSEAI-IDGITESDEATKEFASIIYDESLRLARL 396

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VND+LDLA +++G   +++++  + D L  V +       E  IR++  +  +L    AD
Sbjct: 397 VNDLLDLARIESGKETMHFTSFDIGDFLPRVMRKFNQMASEKEIRLQTDAPHRL--IEAD 454

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+F+ ++ NA+  +  G  + ++A  +       + + G  IP++    VF RF 
Sbjct: 455 GDRLEQVFTNLIGNAIAHTDSGE-IRIEATEETDGLRIQLTDTGHGIPKEDLPFVFERFY 513

Query: 744 -SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++  R  G + G G+GL+IV++ ++ H G VS+SS+    TT    +P
Sbjct: 514 KADKARTSGSKTGTGIGLAIVKNVVDAHHGKVSVSSTLGVGTTFEIYLP 562


>gi|186462503|gb|ACC78614.1| ethylene receptor [Nicotiana tabacum]
          Length = 738

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 132/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 313 ESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  EV   + 
Sbjct: 373 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHVLFREVLNLVK 429

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
                  + + +     L  F + D +RL QI   ++ NA+ FS +GS  I   A     
Sbjct: 430 PIASVKKLFVTLSLSSDLPEFAIGDEKRLTQILLNVVGNAVKFSKEGSVSISAVAAKSES 489

Query: 714 -------------RDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
                         +N  ++   VK+ GS I P+D+ K +F +F  N     +   G GL
Sbjct: 490 LSDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDIPK-LFCKFAQNQALATKSSGGTGL 548

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 549 GLAISKRFVNLMEGHIWIESEGLG 572


>gi|153868974|ref|ZP_01998688.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
 gi|152074468|gb|EDN71320.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
          Length = 324

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 151/332 (45%), Gaps = 32/332 (9%)

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +W      L P   + + A T S+       W     +   + DE  +L  T   ++  +
Sbjct: 4   IWLVASQLLKPIIKLTHAAKTLSK-----GEWQQHVTV--KYQDEVGTLANTFNQMAKQI 56

Query: 526 -LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            + +SI+   N           +S +A     E N+A       K+ FV ++++ELR+PL
Sbjct: 57  RISFSILETKNE----------ESQKARVQAEEANKA-------KSIFVANMTHELRTPL 99

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG++++L+     +        +E I+++   LL L+ND+LD + V+AG M L    
Sbjct: 100 NAIIGYSEMLQEEAEDTGQKDLVPDLEKIASAGKHLLALINDVLDFSKVEAGKMGLYLEE 159

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             +N +L +V  +I   + +NN  + V     LG   +D  ++ Q    +LSNA  F+  
Sbjct: 160 FEINTMLQDVIGTIKQVIEKNNNHLIVNYPKNLGIMQSDVTKVRQCLFNLLSNANKFTET 219

Query: 705 GSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           G T+ L+A R      D+I   V + G  +  D  + VF  F        R+  G GLGL
Sbjct: 220 G-TITLQANRYSQKGEDWISLKVSDTGIGMTADQIEKVFLAFTQADASTTRKYGGTGLGL 278

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            I + F  + GG V++ S     +T +  +P+
Sbjct: 279 VITKQFCQMMGGEVNVESQFGKGSTFSINLPA 310


>gi|148975382|ref|ZP_01812306.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
 gi|145965306|gb|EDK30556.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
          Length = 796

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 123/233 (52%), Gaps = 12/233 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  E    A+  K+ F+ ++S+E+R+P+  IIG + LL       +  +Q +YV  
Sbjct: 227 QELIKAKETAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM---DMPKEQKEYVNM 283

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++ SS  LL+L+NDILD + ++AG ++L    + +  +  +V+ +   K  +  +R ++ 
Sbjct: 284 LNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLRFQLE 343

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR-----DNGDFIFSVKN 725
            D K+ + V  D  +L Q+ + ++ NA+ F+ +G  T+ L+  +           F V +
Sbjct: 344 IDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTERGHVTLSLRLEKVIEPEQKLRVRFEVAD 403

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           +G  I ED  KSVF++F        R   G GLGL+I +  + L G  + ++S
Sbjct: 404 SGIGIAEDKQKSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTS 456


>gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1208

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 16/246 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++TD  R E+ L    +    A + K+ F+ ++S+E+R+P+  IIG T+L   ++   L
Sbjct: 532 IDITDRKRVEQELESARQLAEAASQAKSDFLANMSHEIRTPMNGIIGMTELALDTR---L 588

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND--LLNEVKQSIAT 660
           +  Q  Y+  + +S+  LL +VNDILD + ++AG  KL    I  N    + E  +SI+T
Sbjct: 589 DPTQRDYLNIVLSSAESLLVIVNDILDFSKIEAG--KLAIEEIDFNPAVAVTEALKSIST 646

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--- 716
           +     +R        L + VA D  R+ Q+ + +  NA+ F+  G   +   A  +   
Sbjct: 647 RAERKKLRFAYELSPDLPAVVAGDSGRIRQVLTNLCDNALKFTKAGEIAVRVRAEPSAAG 706

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           GD +   F V + G  I  +    +F  F        RR  G GLGL+I    + L GG 
Sbjct: 707 GDALIAHFEVSDTGIGIDPEQQAQIFEAFTQADTSTTRRFGGTGLGLTISARLVGLMGGR 766

Query: 772 VSISSS 777
           + + S+
Sbjct: 767 IWVDST 772


>gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
 gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
          Length = 692

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 7/240 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T K EA  KA++ K+ F+  +S+E+R+PL +I+G  D+  +S L   + +Q  ++  + +
Sbjct: 316 TAKTEA-EKANKAKSQFLAMMSHEIRTPLNSILGLVDVFHSSLL---SEEQLDWLNQMES 371

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS +LL +++D+LD++ ++AG   LN   I L   LN     + T+  +  I + V +  
Sbjct: 372 SSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAKDKGITLTVTASQ 431

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +  +V AD  RL Q+   ++ NA+ F++ G   +      N     SV + G  I    
Sbjct: 432 NVPKYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSISISVSDTGIGIASTT 491

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + +F  FV       R+  G GLGL+I++  + L  G +++ S     +T    +P KE
Sbjct: 492 LEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLNIGSTFKITLPLKE 551


>gi|325263352|ref|ZP_08130087.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031745|gb|EGB93025.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 1004

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 10/231 (4%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K+SF+  +S+E+R+PL  IIG+ +L K  K      K   Y+     ++  LL+++ND
Sbjct: 627 ETKSSFLSRMSHEMRTPLNAIIGYLELGK--KNADDTEKLWDYMAKSDIAAHQLLSIIND 684

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           +LD+A++++G + L      L + +NE+++   ++     +  +V+ D     ++  D  
Sbjct: 685 VLDMASIESGKLHLEKVQFELTEEINEIREMFESQAWHKKLDFQVLMDSSEKIYIMGDPL 744

Query: 686 RLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGD--FIFSVKNNGSSIPEDMCKSVFN 740
           RL QI   +LSNA+ F+  G  V L   K A   G   + F V + G  + E+   S+F+
Sbjct: 745 RLNQILINLLSNAVKFTPAGGKVTLSVKKTALQEGHVYYCFEVTDTGIGMSEEYLDSLFD 804

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV       R+  G GLG+SI ++ + +  G +S+ S+    T     +P
Sbjct: 805 PFVQQDASIARKYGGSGLGMSITKNLVTMKQGTISVKSTPGEGTVFTVNLP 855


>gi|323698578|ref|ZP_08110490.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458510|gb|EGB14375.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1118

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 14/251 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQ 608
           R  R L     A  +A+  K+ F+  +S+E+R+P+  IIG T L LKT     L +KQ+ 
Sbjct: 351 RNGRELETARRAAEEANRAKSDFLARMSHEIRTPMNAIIGLTHLALKTQ----LTAKQAD 406

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+  +S S+  LL ++NDILD + ++AG + ++ +  +L+D+LN +   +     +  I 
Sbjct: 407 YLAKVSLSANSLLGIINDILDFSKIEAGRLTVDEADFLLDDVLNNIINMLGLSAEQKGIE 466

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFI--FS 722
             ++    + + V  D  RL Q+   + +NA+ F+ KG  VIL+A    +D    +  FS
Sbjct: 467 FLLLVRSTVPNRVRGDALRLGQVLLNLTNNAIKFTEKGE-VILQADLLEQDGTTAVIRFS 525

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  +    +F  F     +   Q  G GLGLSI +  + + GG +++ S    
Sbjct: 526 VRDTGIGIGPEHLDQLFQPFSQADGSITRQFGGTGLGLSISKRLVKMMGGDMAVVSEPGK 585

Query: 781 VTTINCRIPSK 791
            +  +  +P K
Sbjct: 586 GSEFSFTLPLK 596


>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 951

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    EA + A   K+ F+ ++S+E+R+P+  ++G  +LL  ++L   + +Q ++V  + 
Sbjct: 268 LQRAMEAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRL---DEQQRRFVSSVR 324

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+++NDILD + ++AG ++L  +   L D + +V + +A   H   + I  + +
Sbjct: 325 RSGEALLSIINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHRKGLEIAALVE 384

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAA-RDNGDFIFSVKNNGSS 729
             +    + D+ R+ Q+   ++ NA+ F+ +G  +I   LK   ++    +  V + G  
Sbjct: 385 NDVPPVLLGDQVRVHQVLMNLVGNAVKFTDQGEVIISGMLKEEHKEEVTVLIRVSDTGIG 444

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I +++   +F+ F    +   R+  G GLGL+I    + L GG + + S
Sbjct: 445 ISDEVKGRIFDGFSQADNSTTRKYGGTGLGLTIARQLVELMGGEIGVES 493


>gi|225388888|ref|ZP_03758612.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme
           DSM 15981]
 gi|225045061|gb|EEG55307.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme
           DSM 15981]
          Length = 525

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 126/233 (54%), Gaps = 11/233 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL +  +A R A++ K +F+  +S+++R+P+  I+G   ++  + LG+   K +  +  
Sbjct: 1   RALEDAYQAARVANDAKTNFLSSMSHDIRTPMNAIMGMA-VIAQANLGN-PEKLTDCLSK 58

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS SS  LL L+N++LD++ +++G + L+   + L DL+ EV        ++ + ++ + 
Sbjct: 59  ISTSSRHLLGLINEVLDMSRIESGKIDLSSEMVSLPDLVEEVIGICRPLSNQKHHQLFIS 118

Query: 673 SDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKN 725
           +D  +    V D  RL Q+   +LSNA+ ++  G T+ L+           G + F V +
Sbjct: 119 ADHVRHEKVVTDMNRLQQVLMNLLSNAVKYTPDGGTISLRLRELPSIVPGRGQYEFIVSD 178

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           NG  +PED    +F  F    ++   + +G GLG++I E+ +++  G + + S
Sbjct: 179 NGIGMPEDFVPHIFEPFTRAEDSRISKIQGTGLGMTITENIVSMMNGTIEVKS 231


>gi|170702755|ref|ZP_02893612.1| histidine kinase [Burkholderia ambifaria IOP40-10]
 gi|170132326|gb|EDT00797.1| histidine kinase [Burkholderia ambifaria IOP40-10]
          Length = 371

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 5/204 (2%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PL  I G+ ++L+ ++  +L   + Q ++ I  S+  L  +V DILD +++  
Sbjct: 5   VSHELRTPLNVIYGWIEVLRNTRDDAL---EQQAIDAIDRSARSLTRMVGDILDASSLAT 61

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++++   + +  L ++   +  T      I ++            D +RL Q+ + ++
Sbjct: 62  GKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLV 121

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRG 753
           SNA+ F+  G  V +  +RD+   +  V + G  IP      VF+ F     +    RRG
Sbjct: 122 SNALKFTPGGGAVTVTLSRDDAHAVLIVADTGQGIPPVFIPHVFDMFRRADGSPASPRRG 181

Query: 754 VGLGLSIVESFINLHGGHVSISSS 777
           +GLGLSIV     LHGG V + S+
Sbjct: 182 LGLGLSIVRHIAELHGGQVQVESA 205


>gi|45440163|ref|NP_991702.1| hybrid sensory histidine kinase BarA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|162421785|ref|YP_001605547.1| hybrid sensory histidine kinase BarA [Yersinia pestis Angola]
 gi|45435019|gb|AAS60579.1| two-component regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162354600|gb|ABX88548.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           Angola]
          Length = 921

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|326801633|ref|YP_004319452.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
 gi|326552397|gb|ADZ80782.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
          Length = 575

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 1/217 (0%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             R+ D  K +F+  VS+EL++P+++I    +LL     GSLN++Q Q V  I+  S  L
Sbjct: 347 PFRELDLAKTNFIATVSHELKTPISSIKMSLELLNNKLTGSLNNEQQQLVAGIAEDSNRL 406

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L +  ++L+++ V+ G ++LN       ++L+    ++ T      I   +  +  L + 
Sbjct: 407 LRITGELLNMSQVETGNIQLNLRQSKPEEILHYALSAVQTAADHKMIHFDLQVEDPLPNV 466

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D ++   + +  LSNA+ +S +  T+I+    +     FSVK+NG  I E   + +F 
Sbjct: 467 KVDPEKTAWVLTNFLSNAIRYSPEQGTIIISIRLEAKVLRFSVKDNGRGIDERYTQRIFE 526

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           R+        R G GLGL+I + FI   GG + + S+
Sbjct: 527 RYFQ-IPGSNRSGSGLGLAISKEFIEAQGGEIGVESA 562


>gi|229839016|ref|ZP_04459175.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229695382|gb|EEO85429.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262363147|gb|ACY59868.1| two-component regulatory protein [Yersinia pestis D106004]
          Length = 927

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1010

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 122/237 (51%), Gaps = 7/237 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EAL + D  K +F  ++S+E R+PLT ++G  + L + + G L  +Q   V     +
Sbjct: 338 KRAEALLEIDRAKTAFFSNISHEFRTPLTLMLGPLEELLSQQDGVLTKQQEANVTATHRN 397

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDG 675
           +  LL LVN +LD + ++A  ++  Y  + L+D+  ++  +    +    +   V   D 
Sbjct: 398 AMRLLRLVNTLLDFSRIEADKVRAQYFPVNLSDVTTDIASTFRAAVEHAGLEFNVTCKDL 457

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDM 734
            + ++V DR    ++   +LSNA  ++ +GS +VIL+ +  +   I  V++ G  IP   
Sbjct: 458 SMAAYV-DRDMWEKVILNLLSNAFKYTLQGSISVILEESDQHA--ILLVRDTGVGIPVSE 514

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++F RF  V  +      G G+GLS+V   + LH G +S+ S +   +T   +IP
Sbjct: 515 LPNMFERFHRVKQSKGRSFEGTGIGLSLVRELVQLHNGDISVESEEGKGSTFAVKIP 571



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 27/241 (11%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--KLGSLNSKQSQYVEYISAS 616
            +E LRK  E++  F    S++L+ PL  I  F++LL+ S  K   +N+    Y + I +S
Sbjct: 773  SELLRKNSELEQ-FAYIASHDLQEPLRKIRTFSELLQKSLQKGNPVNN----YFDKIQSS 827

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            +  +  L+ D+LD + +     K  +  I LN +L +VK      + +    IK      
Sbjct: 828  AERMTQLIKDVLDYSRLSNTEEK--FVPIDLNTILQQVKGDFDLLIEQKQATIK---SNT 882

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------RDNGDFIFS 722
            L        +L Q+F+ ++ N++ F      + + A+               D       
Sbjct: 883  LPVVKGIPLQLQQLFTNLIGNSLKFCENQPLISIFASPLPAPEIPFYPGLQEDISYVKLE 942

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGV 781
              +NG    +   + +F  F     R    G G+GL++ +  +  H G +  +   +EG 
Sbjct: 943  FSDNGIGFEQQFAERIFAIFQRLNERKVYAGTGIGLALCKKIVENHHGIIRANGKLNEGA 1002

Query: 782  T 782
            T
Sbjct: 1003 T 1003


>gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
 gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
          Length = 793

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 9/231 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AER   EK  A   A E K+ F+  +S+E+R+P+  ++G  ++L  ++   L  +Q+   
Sbjct: 254 AERLQQEKARA-EAATETKSRFLATMSHEIRTPINGVLGMAEVLNETR---LTPEQTSCT 309

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I ASS  LL +VNDILD + ++AG  ++      L D++ +V   ++       + I 
Sbjct: 310 STILASSEALLRIVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSATAKGVEIC 369

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNG 727
           + I +     F+ D  R+ QI   ++ NA+ F+ +G  S  +   AR N      V++ G
Sbjct: 370 IDIPEHTPPEFIGDSGRVRQILMNLVGNAVKFTLEGHISITLNYDARHNIPLCIDVRDTG 429

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             IPED    +F+ F        RR  G GLGL+I        GG + + S
Sbjct: 430 VGIPEDSIGQIFHAFEQVESTTARRFEGTGLGLAISSRLTQAMGGRIDVVS 480


>gi|167423462|ref|ZP_02315215.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167057632|gb|EDR67378.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
          Length = 936

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|166214085|ref|ZP_02240120.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166204716|gb|EDR49196.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. B42003004]
          Length = 939

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|22124721|ref|NP_668144.1| hybrid sensory histidine kinase BarA [Yersinia pestis KIM 10]
 gi|108810875|ref|YP_646642.1| hybrid sensory histidine kinase BarA [Yersinia pestis Nepal516]
 gi|229901084|ref|ZP_04516207.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Nepal516]
 gi|270489264|ref|ZP_06206338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|21957537|gb|AAM84395.1|AE013683_8 sensor-regulator, activates OmpR by phophorylation [Yersinia pestis
           KIM 10]
 gi|108774523|gb|ABG17042.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Nepal516]
 gi|229681809|gb|EEO77902.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Nepal516]
 gi|270337768|gb|EFA48545.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
          Length = 933

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|53729018|ref|ZP_00134277.2| COG0642: Signal transduction histidine kinase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208411|ref|YP_001053636.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae L20]
 gi|190150262|ref|YP_001968787.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|126097203|gb|ABN74031.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915393|gb|ACE61645.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 616

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +  K+  +  +S+ELR+PL  IIG + +L     G L  +Q +Y++ I+ S+ 
Sbjct: 105 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTDQQREYLKTINISAV 161

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++ +DI+DL  +D+  ++L    I  + L++++         +N I+  +     L 
Sbjct: 162 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 221

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           +F+  D  RL QI   ++SNA+ F+  G  + L   R DN  F FS+++ G  IP+   +
Sbjct: 222 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQR 281

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VF  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 282 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLRS 323


>gi|145600234|ref|YP_001164310.1| hybrid sensory histidine kinase BarA [Yersinia pestis Pestoides F]
 gi|153997576|ref|ZP_02022676.1| two-component regulatory protein [Yersinia pestis CA88-4125]
 gi|165936705|ref|ZP_02225272.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010041|ref|ZP_02230939.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|167420808|ref|ZP_02312561.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167469899|ref|ZP_02334603.1| hybrid sensory histidine kinase BarA [Yersinia pestis FV-1]
 gi|218930398|ref|YP_002348273.1| hybrid sensory histidine kinase BarA [Yersinia pestis CO92]
 gi|229899582|ref|ZP_04514723.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. India
           195]
 gi|294505087|ref|YP_003569149.1| two-component regulatory protein [Yersinia pestis Z176003]
 gi|115349009|emb|CAL21970.1| two-component regulatory protein [Yersinia pestis CO92]
 gi|145211930|gb|ABP41337.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Pestoides F]
 gi|149289213|gb|EDM39293.1| two-component regulatory protein [Yersinia pestis CA88-4125]
 gi|165915354|gb|EDR33964.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165990948|gb|EDR43249.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166961614|gb|EDR57635.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|229687074|gb|EEO79149.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. India
           195]
 gi|262367077|gb|ACY63634.1| two-component regulatory protein [Yersinia pestis D182038]
 gi|294355546|gb|ADE65887.1| two-component regulatory protein [Yersinia pestis Z176003]
 gi|320016581|gb|ADW00153.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 930

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|256393258|ref|YP_003114822.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
 gi|256359484|gb|ACU72981.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
          Length = 1588

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 15/248 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 946  QARQELETRAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNSNRNLTPKQVEY 1005

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L++DILDL+ V+AG M ++   + L  LL+ V+ +      +  +  
Sbjct: 1006 AGVIHSAGSDLLQLIDDILDLSKVEAGKMNVDPERVSLQRLLDYVEATFHPLTTQKGLEF 1065

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAA--------RDNGD 718
             V  + G  G  + D  RL Q+   +LSNA+ F+  G     I  AA        RD+G 
Sbjct: 1066 SVRTASGMPGQMLTDDSRLRQVLRNLLSNAVKFTETGGVELSIEPAAPEELPLGVRDSGP 1125

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + F VK+ G  IPE   +++F  F        R+  G GLGLSI      L GG ++  
Sbjct: 1126 ALAFRVKDTGIGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSISREIAQLLGGAITAQ 1185

Query: 776  SS-DEGVT 782
            S+  EG T
Sbjct: 1186 SALGEGST 1193


>gi|218691500|ref|YP_002399712.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ED1a]
 gi|218429064|emb|CAR09871.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli ED1a]
          Length = 778

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG + ++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIMVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|162451335|ref|YP_001613702.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161161917|emb|CAN93222.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 517

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VTD  R +    E  E LR++D  K+ F+  +++ELR PL  I     +++   LG  + 
Sbjct: 127 VTDITRRK----ELEEMLRESDRRKDDFLAMLAHELRGPLAPIRNAVAIMRV--LGLEDP 180

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K     + I    + +  LV+D+LD++ +  G + L   T+ L DL+ E  ++    +  
Sbjct: 181 KFVYARDIIERQVSHMARLVDDLLDVSRISRGKIALQRETLELADLVQEAVEATRPVIQT 240

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSV 723
               + V    +     ADR R++Q+   +L+NA  F+  G  + ++ +R + G+ +  V
Sbjct: 241 PGHTLSVTLPAEQLRIEADRVRIVQVIVNLLTNAAKFTPPGGRIGIEVSRSEAGEAVIRV 300

Query: 724 KNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            + G  I E M   VF  FV   S+  R Q  G+G+GL + +  ++LHGG + + S+  G
Sbjct: 301 TDTGVGIEEAMQPRVFEAFVQETSDLARSQG-GLGVGLWLAKQLVDLHGGRIDVESAGRG 359


>gi|307245847|ref|ZP_07527932.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254820|ref|ZP_07536646.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259262|ref|ZP_07540991.1| hypothetical protein appser11_10590 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263601|ref|ZP_07545215.1| hypothetical protein appser13_10180 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306853207|gb|EFM85427.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862191|gb|EFM94159.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866629|gb|EFM98488.1| hypothetical protein appser11_10590 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871064|gb|EFN02794.1| hypothetical protein appser13_10180 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 586

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +  K+  +  +S+ELR+PL  IIG + +L     G L  +Q +Y++ I+ S+ 
Sbjct: 75  NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTDQQREYLKTINISAV 131

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++ +DI+DL  +D+  ++L    I  + L++++         +N I+  +     L 
Sbjct: 132 SLGHIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLP 191

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           +F+  D  RL QI   ++SNA+ F+  G  + L   R DN  F FS+++ G  IP+   +
Sbjct: 192 NFIYVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQR 251

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VF  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 252 KVFAMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLRS 293


>gi|296156227|ref|ZP_06839066.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. Ch1-1]
 gi|295893733|gb|EFG73512.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. Ch1-1]
          Length = 1344

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 12/238 (5%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +TD   +   L E+ E L +AD  KN F+  + +ELR+PL  +    DLL +    +++ 
Sbjct: 955  LTDRSLSNTQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSAGDLLASE---TVDV 1011

Query: 605  KQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIAT 660
            +Q  + V  I      +  LVN++LDL  + +G +KLN   + L  ++    EV + I  
Sbjct: 1012 RQKAWAVGVIQRQGRAMTQLVNEMLDLTRITSGSIKLNRQAVTLETVVQSALEVCRPIVE 1071

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + H + + + +  +  L     D  RL Q+   I+ NA  ++  G  + L A ++     
Sbjct: 1072 ERH-HTLSVALPEEPVL--MYVDPTRLSQVIENIVINAAKYTEPGGKIDLTATKNGRRLS 1128

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
              VK+NG+ I   M  ++F+ FV      GQ   G+G+GLS+V   + LHGG V   S
Sbjct: 1129 LRVKDNGAGIAPSMLNTLFDMFVQGPLPYGQLHNGLGVGLSVVRRLVELHGGSVEAVS 1186


>gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1705

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 11/253 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T ++++D   AE  L    E   +A + K+SF+ ++S+E+R+P+  IIG + L   ++L 
Sbjct: 943  TVIDISDRKAAEVELLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSHLALQTEL- 1001

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +++Q  Y+E +  S+  LL ++NDILD + ++AG + + +    L D+++ +   +  
Sbjct: 1002 --DARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDNLANLVGL 1059

Query: 661  KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG 717
            K  E  + +      ++  + V D  RL QI   + +NA+ F+  G  +++  +      
Sbjct: 1060 KAEEKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISVRVMDQGA 1119

Query: 718  DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            D++   FSV + G  +  +    +F  F        R+  G GLGL+I      L GG +
Sbjct: 1120 DWVRLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLTELMGGEI 1179

Query: 773  SISSSDEGVTTIN 785
             + S+    +T  
Sbjct: 1180 RVESAPGAGSTFG 1192


>gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG6]
 gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1149

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 15/245 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT +  A+ AL E  EA   A   ++ F+ ++S+E+R+P+  +IG T LL  +    LN
Sbjct: 489 DVTAAHAAQAALIEAKEAAEHATRARSEFLANMSHEIRTPMNGVIGMTGLLLDTP---LN 545

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y E I +S   LL ++NDILDL+ +++G M+L      + + +      +A    
Sbjct: 546 ERQREYAETIRSSGESLLTIINDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAF 605

Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------- 714
              + +  +I+       ++D  RL QI   +L NA+ F+  G  V L+ +R        
Sbjct: 606 AKGLDLAYLIAADVPMMLISDVTRLRQILVNLLGNAVKFTEHGE-VTLQVSRYPDFDLEA 664

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           D    +  V++ G  IP D    +F  F  V  +      G GLGL I +    + GG +
Sbjct: 665 DQVHLVIEVRDTGIGIPPDKLDRLFRAFSQVDASTTRTYGGTGLGLVICKRLSEMLGGGI 724

Query: 773 SISSS 777
           S+ S+
Sbjct: 725 SVESA 729


>gi|282165286|ref|YP_003357671.1| putative histidine kinase [Methanocella paludicola SANAE]
 gi|282157600|dbj|BAI62688.1| putative histidine kinase [Methanocella paludicola SANAE]
          Length = 589

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 2/251 (0%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            NV D+ R  + L E  E L+  D  K  F   +S+ELR+PL  I G+T+LL    LG +
Sbjct: 327 ANVIDAARIHKELEESYEKLKDLDRTKMEFFTLISHELRNPLAIIKGYTELLYDGTLGPI 386

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N KQ   +  +  +   L ++V  + +++++++    ++   + L D+++E+ +++    
Sbjct: 387 NDKQKDKLARVRENVDKLADMVGKMSEISSLESRKYTVDRVPVSLGDMVSEIAETMGFLF 446

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               I + V     L     DR+++ Q+   +L+NA+ ++ +G  V + A     D + S
Sbjct: 447 QNKRITLNVDIPENLPLVEVDRKKMEQVLLNLLNNALKYTPEGGHVTVTAEDRPADILVS 506

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP+     +F+ F  + ++   + +G GLGL+I    I  HGG +   S    
Sbjct: 507 VWDTGIGIPQKDLDKIFSGFYHSGYKLSYEYKGPGLGLAISRKIIEGHGGRIWAKSEVGK 566

Query: 781 VTTINCRIPSK 791
            +T    IP +
Sbjct: 567 GSTFYFTIPKR 577


>gi|239627024|ref|ZP_04670055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517170|gb|EEQ57036.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 843

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 130/251 (51%), Gaps = 15/251 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-- 607
           R   AL E  +  R A+  K +F+  +S+++R+P+  I+G T + +     +L S +   
Sbjct: 311 RQRNALEEAYQVARVANAAKTNFLSSMSHDIRTPMNAIMGMTTIAQ----ANLESPEKIR 366

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +E I  SS  LL+L+N++LD++ +++G + L  + + L D++ EV       ++E + 
Sbjct: 367 DCLEKIKTSSRHLLSLINEVLDMSKIESGKVSLALAQMNLPDMIQEVMDMCRPLVNEKHQ 426

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFI 720
             ++ I   +  + +AD  RL Q+   +LSNA+ ++ +G T+ L+         D   + 
Sbjct: 427 LFRISIGRVRHENVIADGDRLRQVLMNLLSNAIKYTQEGGTITLRINERSSLTPDKRQYE 486

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F   +NG  I +D    +F+ F    ++   + +G GLG++I E+ + +  G + + S +
Sbjct: 487 FICTDNGIGISKDYLPHIFDAFTRAEDSRVSKIQGTGLGMAITENIVRMMNGIIDVKSEE 546

Query: 779 EGVTTINCRIP 789
              +T+   +P
Sbjct: 547 GAGSTVTVSVP 557


>gi|71907402|ref|YP_284989.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847023|gb|AAZ46519.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1169

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 170/387 (43%), Gaps = 28/387 (7%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T     E +   L  +    I+ + EG +V+    R+   N  +R L+        PG
Sbjct: 560 DITAHKQAEEQRQYLESILHSAIEAIGEGFSVYNAADRLTWCNEQYRRLYTISAPAFVPG 619

Query: 478 THIRNIAATCSRY------YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSI 530
                I     RY      Y E+   +  A +       R+S    ++ L+D   L+   
Sbjct: 620 NSFEEII----RYGIEHGQYPEAQA-NPEAWVQRRLLAHRQSESNFIQKLADGRWLDVRE 674

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               +   +   V++T+ + A++A    N A       K+ F+  +S+E+R+P+ +I+G 
Sbjct: 675 RKTADGSIVGFRVDITELMHAKQAAEAANRA-------KSEFLATMSHEIRTPMNSILGM 727

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             +L    +    S+   Y   I  S   LL ++ND+LDLA V++G ++L+ +  +   L
Sbjct: 728 AQILCGPDVSDPRSR--DYGRVILESGKTLLTILNDVLDLAKVESGRVELDPTPWLPQQL 785

Query: 651 LNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
             ++            + I    DG +   ++AD  RL Q+ S ++SNA+ F++ GS  I
Sbjct: 786 AQDILALFRGVAQGKGLIISAEWDGPRTQEYLADGYRLKQMLSNLVSNALKFTAIGSVDI 845

Query: 710 LKAARDN-GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             +  D   DF    FSV + G  I  +  + +F  F        RR  G GLGLSIV  
Sbjct: 846 RISEIDRTNDFATLEFSVTDTGIGISSEKQQGLFQPFTQADGSTTRRYGGSGLGLSIVRH 905

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
              L GG   + S ++  + +  RIP+
Sbjct: 906 LAELMGGEAGLESEEKKGSRLWFRIPA 932


>gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 910

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 128/246 (52%), Gaps = 6/246 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N T   +  + L E  E    +D +K++F+ ++S+E+R+PL  I+GF++L+ +       
Sbjct: 525 NNTKWEKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSC---DDP 581

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y+  I +++ +LL L+NDILDL+ +++GI++       L+ + NE+   +  K+ 
Sbjct: 582 EEKEEYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKIT 641

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +++ + G       DR RL Q++   L+NA+  +  G  + +  + + G   F V
Sbjct: 642 NPEVELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG-YIKMGYSIEKGGIRFYV 700

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +++G  IP ++   VF RF       Q  G GLGL+I  + I    G V  SS     +T
Sbjct: 701 EDSGVGIPLEVQDRVFGRFQKLNEFAQ--GTGLGLAISRAIIEGADGKVGFSSVPGVGST 758

Query: 784 INCRIP 789
               IP
Sbjct: 759 FWAWIP 764


>gi|108808871|ref|YP_652787.1| hybrid sensory histidine kinase BarA [Yersinia pestis Antiqua]
 gi|167398949|ref|ZP_02304473.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|108780784|gb|ABG14842.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Antiqua]
 gi|167051453|gb|EDR62861.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
          Length = 927

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
          Length = 2062

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E    A   K+ F+ ++S+E+R+P+  IIG TDL   ++L    ++Q +Y+  + +S+  
Sbjct: 1338 ETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL---TAEQREYLSMVQSSAGS 1394

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
            LL ++NDILD + ++AG ++L+ +   L   L +  ++++ + H+  I +   I+     
Sbjct: 1395 LLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPD 1454

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI--FSVKNNGSSIPED 733
            S + D  RL QI + ++ NA+ F+S+G     V ++ +   G+ +  FSV + G  IP+D
Sbjct: 1455 SLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFSVIDTGIGIPKD 1514

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
                +F  F        RR  G GLGL+I    + L  G +S +S S +G T
Sbjct: 1515 KLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGST 1566


>gi|606149|gb|AAA58012.1| protein kinase [Escherichia coli str. K-12 substr. MG1655]
          Length = 776

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 131/247 (53%), Gaps = 14/247 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT-T 783
             IP+D    +F  +  V ++H G +   G+GL++        GG ++++S   +G T T
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSH-GGKPATGIGLAVSRRLAKNMGGDITVTSEQGKGSTFT 498

Query: 784 INCRIPS 790
           +    PS
Sbjct: 499 LTIHAPS 505


>gi|331652019|ref|ZP_08353038.1| TMAO reductase sytem sensor TorS [Escherichia coli M718]
 gi|331050297|gb|EGI22355.1| TMAO reductase sytem sensor TorS [Escherichia coli M718]
          Length = 914

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRTLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ KG  ++L++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDKGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|330507649|ref|YP_004384077.1| signal transduction histidine-protein kinase [Methanosaeta concilii
           GP-6]
 gi|328928457|gb|AEB68259.1| signal transduction histidine-protein kinase [Methanosaeta concilii
           GP-6]
          Length = 656

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 133/257 (51%), Gaps = 15/257 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R++  L +  E    A + K+ F+ ++S+E+R+PL  +IG T          L 
Sbjct: 255 DVTERKRSDEMLWKAKEEAEAAAKAKSEFLANMSHEIRTPLNAVIGLT---GLLLDTDLT 311

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+E +  SS  LL+++NDILD + +D G+M+L +S   L   +      + T++ 
Sbjct: 312 PEQRNYLEIVRNSSDSLLSVINDILDFSKIDGGMMELEHSPFDLRRCIESTMDLMVTRVA 371

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDNGDF 719
           E  + +KV+ D +L +  V D  RL Q+ + +LSNA+ F+ KG    +V   A  +  + 
Sbjct: 372 EKGLVLKVVLDDQLPTMLVGDASRLRQVLANLLSNAVKFTDKGFVEVSVRGNAIPEGFEL 431

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F V + G  +P+D    +F  F        RR  G GLGL+I +  + + GG +  + S
Sbjct: 432 RFDVLDTGIGMPQDKLDRLFMPFSQIDSSITRRYGGTGLGLAISKRLVGMMGGRI-WAKS 490

Query: 778 DEGVT-----TINCRIP 789
           + GV      TI  ++P
Sbjct: 491 NPGVGSTFTFTIKVKLP 507


>gi|325917462|ref|ZP_08179671.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
 gi|325536336|gb|EGD08123.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1253

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 12/238 (5%)

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            S++AE A   + E    A  +K+ F+  +S+ELR+PL  I+G++ L+++      N    
Sbjct: 852  SLQAETAARGQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSQNFAPENLANG 908

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
              +  I  S+     +++D+LD++ + +G ++L      +  L     + +        I
Sbjct: 909  LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPAALAREI 966

Query: 668  RIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +++  D   GS   F  D  RL Q+ + +LSNA+ F++ G  V +    ++G     V+
Sbjct: 967  ALEL--DAPAGSELWFFGDAGRLQQVLTNLLSNALKFTASGGNVRVGLDVEDGRLRLCVQ 1024

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            ++G  I  +    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 1025 DSGIGIAPEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 1082


>gi|254391838|ref|ZP_05007033.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294815467|ref|ZP_06774110.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|197705520|gb|EDY51332.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294328066|gb|EFG09709.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 1804

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 1337 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNPETNLSPKQVEFA 1396

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1397 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1456

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  GS   VI  +  D            
Sbjct: 1457 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSGADVPQSIREQLLEV 1516

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  +G  I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1517 GSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1576

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1577 LLGGEIHAASEPGRGSTFTLYLP 1599


>gi|196033335|ref|ZP_03100747.1| sensory box histidine kinase [Bacillus cereus W]
 gi|218903030|ref|YP_002450864.1| sensory box histidine kinase [Bacillus cereus AH820]
 gi|228926974|ref|ZP_04090040.1| hypothetical protein bthur0010_16900 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229121461|ref|ZP_04250688.1| hypothetical protein bcere0016_17650 [Bacillus cereus 95/8201]
 gi|195993769|gb|EDX57725.1| sensory box histidine kinase [Bacillus cereus W]
 gi|218536683|gb|ACK89081.1| sensory box histidine kinase [Bacillus cereus AH820]
 gi|228661925|gb|EEL17538.1| hypothetical protein bcere0016_17650 [Bacillus cereus 95/8201]
 gi|228832709|gb|EEM78280.1| hypothetical protein bthur0010_16900 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 288

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 135/246 (54%), Gaps = 13/246 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL +   +
Sbjct: 41  TNVNRMAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHANGEE 99

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L N V+++L+   ++   ++L+ S + +  L+ ++      ++ + 
Sbjct: 100 CEQYVSILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDA 159

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+   +  D +L   + D   ++++F  ++SN++ +   G  +++  ++ + +    VKN
Sbjct: 160 NMSFCIKGDKELHVEI-DVALMVRLFENVISNSIMYGKDGKEILILVSKRDMNVEIEVKN 218

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778
            G  IP++    VF +F    +RG++       G G+GL+I  S   LH G +++ S++ 
Sbjct: 219 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEK 274

Query: 779 EGVTTI 784
           E + TI
Sbjct: 275 ETIFTI 280


>gi|159900448|ref|YP_001546695.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893487|gb|ABX06567.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 422

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A E + +F+ + S+ELR+PLT +   +++ L+ S   +  ++Q + +E I A +  + 
Sbjct: 197 QQAWERQQAFIANASHELRAPLTLMRASSEIALRES---TDPAEQQELLEDILAETYHMA 253

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+L L+ +DA    L   TI L +L  +V +      H+  + ++V      G   
Sbjct: 254 RLVEDLLLLSRLDAAKTHLQRETIDLAELCQDVAKDAGRLAHDAGVEVRVAH--AEGQIK 311

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR RL Q+   +L NA+  + +G +V++ A R    +  SV + G  I     K +F R
Sbjct: 312 VDRTRLRQVLLILLDNAIAHTPRGGSVVIHAERKQTSYQISVIDTGKGIEPKHLKHIFER 371

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V +A     RG GLGLSI ++ I  H G +   S+    TT+   +P
Sbjct: 372 FYRVDSARIAGGRGNGLGLSIAQALIQAHNGTIEAQSNVGTGTTMLINLP 421


>gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 910

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +T K+EA R A++ K++FV ++S+E+R+PL  ++G   LL+ +   SL+  Q  YV  I 
Sbjct: 523 ITAKDEAER-ANQAKSTFVANMSHEIRTPLNGVLGLAQLLEKT---SLSVDQRSYVRRIL 578

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL  VNDILD A ++AG +++  S   L+ LL  V  S+  +   +      ++ 
Sbjct: 579 DSGQQLLTTVNDILDFAKMEAGRLEIEESGFSLHALLQPVIDSVFVEEESSPKFCLDVAP 638

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSI 730
           G   + + DR R+ Q+   +L NA+ F+ +G     V+     + G  + FS+ + G  I
Sbjct: 639 GIPENLIGDRFRIGQVLINLLGNALKFTKEGHVSLHVVSMGLGEKGVILKFSIIDTGVGI 698

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             D+ K +F  F        R   G GLGL+I +  +   GG + + SS
Sbjct: 699 ALDVQKQLFVPFTQADSSVTRNYGGTGLGLTICKKLVVAMGGDIGLESS 747


>gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 801

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 133/257 (51%), Gaps = 13/257 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +VT+  R E  L    +    A++ K+ F+ ++S+E+R+P+  I+G+ D+L    LG
Sbjct: 366 TVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVL----LG 421

Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            L    ++  V  I  +   LL+L+NDILDL+ ++AG + ++  ++ L  L+ +++  + 
Sbjct: 422 HLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQ 481

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714
            +  E N+  +V  +G++  S   D  RL Q+   ++ NA+ F+ +GS  +    +K A 
Sbjct: 482 VRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRFMKGA- 540

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D     FS+ + G  I ++    +F  F        R+  G GLGL+I +  I +  G +
Sbjct: 541 DPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEM 600

Query: 773 SISSSDEGVTTINCRIP 789
           S+ S     +T   R+P
Sbjct: 601 SLESELGEGSTFFVRLP 617


>gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1075

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 7/242 (2%)

Query: 540 LTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           LT V ++T   R E AL E+ E    A+  K++F+  +S+E+R+P+  I+G  +LL+ S 
Sbjct: 669 LTLVQDITARKRMELALQEQKEQAEAANRAKSTFLAVMSHEIRTPMNAILGMAELLRES- 727

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S+Q   VE ++ S   LL+L+NDILDL+ ++A  + L +    L  L+ +V    
Sbjct: 728 --DLTSRQHWCVETLNRSGESLLSLINDILDLSKIEAERLTLEHVVFDLVQLVGDVCSLF 785

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +     + +K      L  + V D  RL QI   ++ NA+ F+ +G   +      +G
Sbjct: 786 GYEAQSKGLALKHHIAPTLPRYVVGDPIRLRQIMMNLVGNAVKFTKQGHVSVELNPLADG 845

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F +++ G  +  +  +++F  F        R   G GLGL+I    + L GG + + 
Sbjct: 846 RLSFVIRDTGIGVSVEQQRNIFKPFTQADSSITREHGGTGLGLTICMRLVALMGGEMQLE 905

Query: 776 SS 777
           S+
Sbjct: 906 ST 907


>gi|254518211|ref|ZP_05130267.1| two-component sensor kinase [Clostridium sp. 7_2_43FAA]
 gi|226911960|gb|EEH97161.1| two-component sensor kinase [Clostridium sp. 7_2_43FAA]
          Length = 373

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 12/235 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           RKA + KN  + +VS++LR+PLT+I+G+ +++ + K    +    +Y   I+   +  LN
Sbjct: 139 RKAQKTKNDLITNVSHDLRTPLTSIMGYLEIIDSDKY--YDEVTLRYYANIAYEKSKSLN 196

Query: 623 -LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            L+ND+ +L  +    +KL+ + I L +LL +V      +   +N+  +V  SD KL   
Sbjct: 197 LLINDLFELTKMQNNTIKLDKNDINLVELLGQVVAYFEVQFKNSNMESRVNFSDDKL-IV 255

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            AD  +L++ F  +LSNA+ +   G  V  + KA  +N   +  + N G SIP      +
Sbjct: 256 NADGGKLVRAFENLLSNAIKYGEDGHYVDIVTKAEEENA--VVQIINYGQSIPSVDLPYI 313

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+RF  +  +      G GLGLSI ++ I LH G++S + SD+  T    R+P K
Sbjct: 314 FDRFYRIEKSRNSNIGGSGLGLSITKNIIELHNGNIS-AYSDDYKTIFEVRLPIK 367


>gi|220920192|ref|YP_002495493.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
 gi|219944798|gb|ACL55190.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
          Length = 1009

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 10/226 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K  F+  +S+E+R+PL+++IG+T+LL       L   Q      I ++ + LL +V
Sbjct: 518 ASQAKTDFLASMSHEIRTPLSSVIGYTELLLDDP--DLTEGQRLQASRIRSAGSALLTVV 575

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
           +DILD + ++AG + L+     L+ L+      +        + I+V  D  L  + V D
Sbjct: 576 DDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGLEIRVDIDPALPQTLVGD 635

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
           + RL QI    L+NA+ F+ +G  V+  A   + D       SV + G  I  +    +F
Sbjct: 636 QNRLRQILLNFLNNALKFTRRGRVVLAVATAGSTDRGWPIRVSVTDTGIGIAPEQQARLF 695

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
            RF  V  + R +  G GLGL+I +  I L GG +  +S+  EG T
Sbjct: 696 KRFTQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVVSAPGEGST 741


>gi|189466273|ref|ZP_03015058.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM
           17393]
 gi|189434537|gb|EDV03522.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM
           17393]
          Length = 644

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E AL E  +   ++  +K++F+ ++S+E+R+PL  I+GF+D+L +   G+   +Q  YV
Sbjct: 402 SESALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GTSVDEQQGYV 459

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRI 669
           + I  +S +LL L+NDILD++ ++A  +        +  L  +V  S++  +  EN    
Sbjct: 460 DIIKTNSDLLLRLINDILDVSRLEADRVTFTIEKCDVVPLCQQVLASVSQARKSENEFIF 519

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNG 727
           +   D +      D QRL Q+   +LSNA  F+  G  + LK   D+   +  FSV + G
Sbjct: 520 EC--DRESVDLRTDTQRLQQVIINLLSNADKFTRNGK-ITLKLEVDDEKRVATFSVSDTG 576

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + IP +  K VF RF       Q  G GLGLSI +  +   GG + + S
Sbjct: 577 TGIPLEKQKQVFERFEKLNEYVQ--GTGLGLSICKLTVEKWGGEIWVDS 623


>gi|14572558|gb|AAK64658.1| ethylene receptor [Malus x domestica]
          Length = 570

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 144 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 203

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
               ++Q   VE I  SS +L  L+ND+LDL+ ++ G ++L  +T  L+ +  EV   I 
Sbjct: 204 ---TAEQRLMVETILRSSNLLATLINDVLDLSRLEDGSLQLEIATFNLHSVFREVHNMIK 260

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
               +   ++ + + +D  + + + D +RL+Q    ++ NA+ FS +GS  I       +
Sbjct: 261 PVASIKRLSVTLNIAADLPMYA-IGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSE 319

Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + RD    DF              VK++GS I P+D+ K +F +F        R   G G
Sbjct: 320 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQALATRNSGGSG 378

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 379 LGLAICKRFVNLMEGHIWIESEGLG 403


>gi|83944051|ref|ZP_00956508.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36]
 gi|83845298|gb|EAP83178.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36]
          Length = 798

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 20/263 (7%)

Query: 546 TDSVRAERALTEKNEALR------------KADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           +D+V  ERA  +   ALR            K +++K+ FV  VS+ELR+PLT+I G   L
Sbjct: 532 SDAVVVERA--KNGRALRMLGIQIDITESNKLEQMKHDFVATVSHELRTPLTSIKGALGL 589

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+       ++   + V+  +A+   L+ LVNDILD+  ++AG M +      L D++  
Sbjct: 590 LEAQTQDDPDAGAVRLVQIATANCDRLVALVNDILDMEKINAGSMTVVPKPEKLGDIVTL 649

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + +     E  + I V +       + D+ R++Q+ + +LSNA  F+   + V +  A
Sbjct: 650 AAEQVEPYASEWKVEIDVDTPDPDHHVLTDKNRIMQVLTNLLSNACKFAYPETAVTVTTA 709

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                   SV N G+ I E+  + +F  F     ++  QR G GLGL+I    +   GG 
Sbjct: 710 PVGDMTKISVTNLGNGISEEFRERIFQPFSQAEASNTRQRGGTGLGLNISRHLVEAMGGE 769

Query: 772 VSISS--SDEGVTTINCRIPSKE 792
           +   S   +E V    C  PS E
Sbjct: 770 IGFDSVPGEETVFWFTC--PSTE 790


>gi|332306526|ref|YP_004434377.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173855|gb|AEE23109.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1040

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 120/223 (53%), Gaps = 12/223 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+KA  +K++F+ ++S+E+R+PL  IIG  +L+K   L      Q +Y+E    S   L 
Sbjct: 507 LQKASRVKSAFISNISHEMRTPLNGIIGTLNLVKRDPL---TDNQQRYIEMTEVSVNTLS 563

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG--S 679
            LVND+LDL+ ++AG + L++ +    +L+  +  S+A K  E  +   VI   +L   S
Sbjct: 564 TLVNDVLDLSKIEAGKLDLDFKSFNPINLIESLCGSMAVKAQEKGLEF-VIDVSRLDCVS 622

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF--SVKNNGSSIPEDMC 735
            V+D  R  QI + +++NA+ F+ KG   +    +  D+G  +   +++++G+ I ++  
Sbjct: 623 MVSDPHRFSQIMTNLVNNAIKFTEKGYIKVSAYTQQTDSGSVVLHCAIEDSGTGIAKENQ 682

Query: 736 KSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +F+ F    ++   +  G GLGLSI    + L  G V   S
Sbjct: 683 HKLFSAFSQEDSSIASKHGGTGLGLSICRQLVTLLNGDVRFES 725


>gi|261212467|ref|ZP_05926752.1| sensor protein TorS [Vibrio sp. RC341]
 gi|260838398|gb|EEX65054.1| sensor protein TorS [Vibrio sp. RC341]
          Length = 969

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 120/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K++F+  +S+E+R+P+  ++G   LL+ +   SL S Q  YV+ I+ S   LL +
Sbjct: 465 QANRAKSAFLATMSHEIRTPMNGVLGTARLLQET---SLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++ S   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHQSHFDLYRLVRETHELMQSRALEKGITLSYQIDENVSQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++    +G   F+V+++G  I E    S+F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGQVCIRVRFDTQSGGLCFAVEDSGIGIAEQDQVSLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + +SS
Sbjct: 642 F-TQAEAGRRKQGGTGLGLAISRKLVEAMGGELQLSS 677


>gi|238757840|ref|ZP_04619022.1| hypothetical protein yaldo0001_20250 [Yersinia aldovae ATCC 35236]
 gi|238703825|gb|EEP96360.1| hypothetical protein yaldo0001_20250 [Yersinia aldovae ATCC 35236]
          Length = 909

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 7/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LT   +   +A++ K+S +  +S+ELR+PL+ ++G  +LL+ +    ++ KQS+    
Sbjct: 373 RELTLAKQQAEQANKRKSSHLTTISHELRTPLSGVLGALELLQMTP---MSDKQSRLANT 429

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            S  +  LL ++N++LD + +++G + L+     L  LL++   +I        + +K  
Sbjct: 430 ASQCTLSLLGIINNLLDFSRIESGQLSLHVEETPLLPLLDQAMHTIQGLGQTKGLALKTF 489

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
              K+   +  D  RL QI   +L NA+ F+  G  + L   R N   IF+V ++G  I 
Sbjct: 490 VGHKVPLHLEVDGMRLRQILVNLLGNALKFTENGG-ICLTVKRCNDRLIFAVSDSGHGIS 548

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               K+VF  F  +  +G  +G GLGL+I  +   + GG + + SS    T I+  +P
Sbjct: 549 LADQKAVFEPFFQS--QGHIQGTGLGLTIASNLAKMMGGWLELHSSSGLGTCISFLLP 604


>gi|225851032|ref|YP_002731266.1| histidine kinase [Persephonella marina EX-H1]
 gi|225645773|gb|ACO03959.1| histidine kinase [Persephonella marina EX-H1]
          Length = 666

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 557 EKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           E+ E L KA      K++F+ ++S+ELR+PL +IIGF   L+ ++    N K ++ +E  
Sbjct: 432 ERLELLHKAQSASRAKSAFISNMSHELRTPLNSIIGFAQYLQMAETDEENIKAARSIE-- 489

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL+++NDILD A ++AG +K+N  +  +  L++E+   +   + E  +++ ++ 
Sbjct: 490 -LAGRHLLDMINDILDFAKIEAGAVKVNKRSFPVKKLIDEISAMVQPLIQEKGLKL-ILP 547

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +        D + L Q+   +LSNA+ F+ +G  + +   +DNG   FSV + G  I  +
Sbjct: 548 ENTDTVINTDYRLLKQVLLNLLSNAVKFTEEG-YIKIDVRKDNGKIYFSVIDTGIGISRE 606

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
               +F  F  + N  + + +G GLGL+I + +I L GG +   S  EG
Sbjct: 607 NIDKLFKDFTQLENPLQKKYKGTGLGLAISKKYIELLGGEIYAYSEGEG 655


>gi|218246196|ref|YP_002371567.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166674|gb|ACK65411.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1578

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 130/243 (53%), Gaps = 10/243 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  +++     E  L +  E    A+  K+ F+ ++S+ELR+PL  I+GFT LL   +  
Sbjct: 1097 THKDISQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLL--GRDT 1154

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            SL++   + ++ I+ S   LL L++DILDL+ ++ G + L  +   L+ LL  V++ ++ 
Sbjct: 1155 SLSAYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSP 1214

Query: 661  KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
            K     I++ +  D  L  ++  D ++L QI   +L+NA+ F+ +G TV L+      D 
Sbjct: 1215 KAESKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQG-TVTLRVNLSKIDQ 1273

Query: 719  ----FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  F V++ G  I  D   ++F  FV + A +   +G GLGL+I +  + L GG + 
Sbjct: 1274 KAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGKKINQGSGLGLAISQKLVQLMGGKIE 1333

Query: 774  ISS 776
            ++S
Sbjct: 1334 VNS 1336


>gi|212634200|ref|YP_002310725.1| hybrid sensory histidine kinase BarA [Shewanella piezotolerans WP3]
 gi|212555684|gb|ACJ28138.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A:Hpt [Shewanella piezotolerans WP3]
          Length = 935

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 13/240 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L+S Q  Y+  I  S
Sbjct: 293 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYIRTIERS 347

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +T LL+++NDILD + ++AG M L      L +++ E    +++   E  I + +  D +
Sbjct: 348 ATNLLSIINDILDFSKLEAGKMVLENMPFSLREVIEETVTMLSSSAREKEIDLVIDVDPR 407

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNGSSIP 731
           +   V  D  R  Q+ + ++ NA+ F+  GS  +     +  D    V+    + G  I 
Sbjct: 408 IPEDVTGDAMRFSQVITNLVGNAVKFTDSGSVQLKMQLEEIADGSVHVRTEIIDTGIGID 467

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D   S+F  F        RR  G GLGL I +  +N  GG +  +S  +  +T    +P
Sbjct: 468 ADKLASLFQAFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCNSEPQQGSTFWFSLP 527


>gi|226225128|ref|YP_002759235.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254854408|ref|ZP_05243756.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|255519926|ref|ZP_05387163.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J1-175]
 gi|300766081|ref|ZP_07076049.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|225877590|emb|CAS06304.1| Putative two-component sensor histidine kinase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607808|gb|EEW20416.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300513227|gb|EFK40306.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017]
          Length = 459

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L+K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L++   ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731
            D    ++  D + L Q++S +L+NA+ F+ +G  + +            V+++G  I  
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGK 398

Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           EDM K +F+RF  +N  R +  G  GLGLSI +  I LH G +++ SS E  TT   ++P
Sbjct: 399 EDMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLP 457


>gi|157373280|ref|YP_001471880.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157315654|gb|ABV34752.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1064

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 14/217 (6%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  IIG  DLL TS   SLN  Q      I  SS  LLN++NDILD +
Sbjct: 422 FLATMSHEIRTPMNGIIGMIDLLLTS---SLNRDQRSMTNTIRDSSFSLLNIINDILDFS 478

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            ++AG ++L      +++LL  V  +I     E  + +++ +D  +   +  D  R+ Q+
Sbjct: 479 KIEAGKLELESLNFSISELLESVIDTITPNADEKRVTLELYTDPNIPHHIQGDPVRIRQV 538

Query: 691 FSKILSNAMDFS----SKGSTVI-LKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRF 742
              ++ NA+ FS    S+G   I LK    +   +F    +++NG  I     + +F  F
Sbjct: 539 LFNLVGNAVKFSAVQDSRGEVRITLKKKELSNQLVFLTIEIQDNGIGIEAKQLERLFQPF 598

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
                   R+  G GLGL+I ++ +NL GG + +SS+
Sbjct: 599 TQAESSTTRQFGGTGLGLAICQNLVNLMGGKIDVSST 635


>gi|124009958|ref|ZP_01694623.1| MmoS [Microscilla marina ATCC 23134]
 gi|123984042|gb|EAY24420.1| MmoS [Microscilla marina ATCC 23134]
          Length = 670

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 160/344 (46%), Gaps = 28/344 (8%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           + +   +G I  +N AF  + K EE+ L    H    +   S Y+  S   D++  +   
Sbjct: 317 ITITDRNGYITHANEAFCRVSKYEEHELLGQKH----SLVNSGYHPRSFFKDMWGTVRKG 372

Query: 507 F----DDERKSLQGTLELLSDSVLEYSIIPL--------PNAQTMLTFVNVTDSVRAERA 554
                +   ++  GT   +     + +I+P         P     + F ++T+   AE+ 
Sbjct: 373 MLWRGEIHNRAKDGTFYWV-----DVTIVPFLYKDEGHDPYKYLFIRF-DITERKNAEKQ 426

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +   +A+ +K++F+ ++S+E+R+PL  I+G   L++   + S N     Y   I 
Sbjct: 427 LIVAKDKAEEANRLKSNFLANMSHEIRTPLNGILGVVQLIE---IESDNETMLHYAHLIG 483

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LLN +N ILDL+ ++A   ++++  + + +L++ + QS+    +  NI + +  +
Sbjct: 484 QSGQRLLNTINGILDLSRIEANRAEVSWEQVNIIELVSALVQSLEVLANSRNIYLNIEFN 543

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                 + D   L Q+ + +L NA+ F+ +G  V L+   +N      V + G  I E  
Sbjct: 544 LAQKQVLIDPYLLEQVLNNLLGNAIKFTERGG-VTLRLNDENNCLTIEVIDTGIGIEEHF 602

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            K +F  F   +   +RR  G GLGL+I +  + L GG + + S
Sbjct: 603 LKEIFEPFKQESTGMERRFQGSGLGLAIAKKIVELMGGDIKVHS 646


>gi|83943103|ref|ZP_00955563.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domain proteins)
           [Sulfitobacter sp. EE-36]
 gi|83846111|gb|EAP83988.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domain proteins)
           [Sulfitobacter sp. EE-36]
          Length = 515

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 132/279 (47%), Gaps = 31/279 (11%)

Query: 527 EYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI-------KNSFVQHVS 577
           EY ++ L      T +T   +       R   E  E LRKA +        K+ F+  +S
Sbjct: 211 EYKLLALVIAGTATTITLGGLFTYFIENRTRMESIEELRKARDAAEGASRAKSEFMSVLS 270

Query: 578 YELRSPLTNIIGFTDLLK----------------TSKLGSLNSKQSQ-YVEYISASSTIL 620
           +ELR+PLT +IG+   L                 T K  ++   Q++ Y + +  +   L
Sbjct: 271 HELRTPLTIVIGYAGFLTKLKTTTTAKLSPGEPITEKHYNIIGDQAELYGQRVKFAGNHL 330

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L ++NDILD  +++   +KL  +T     LL +V+          ++ +  I DG L   
Sbjct: 331 LTIINDILDYTSIELNDIKLAKTTFPTRALLAQVEDQFQGMAQGKDVTLH-IPDGSL-DV 388

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            ADR R LQI   ++ NA+ FS KG  + L+A  D G F F V++NG  + +   +S+F 
Sbjct: 389 NADRGRCLQILINLVGNALKFS-KGKDIFLRAEVDGGGFRFEVEDNGVGMEQKDLESIFQ 447

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F  + +A      G GLGL+I +     HGG +S++S+
Sbjct: 448 AFTQIESADNRSEGGTGLGLAICKKLALAHGGDISVAST 486


>gi|299831225|gb|ADJ55753.1| hypothetical protein [Clostridium sporogenes]
          Length = 616

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 153/293 (52%), Gaps = 21/293 (7%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVTDSVRAERAL--TEKNEAL-- 562
           + E+K++Q T      + + Y+ +P     T+L+ + ++T  ++ E+     +KN  L  
Sbjct: 305 NKEKKTIQNT-----STYVIYNGMP-----TVLSILHDITSKIQVEKLEQDVKKNIELLN 354

Query: 563 --RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             R+ +++   F+ ++S+EL++PL  I     LL   +      K+ +Y++ I  +   L
Sbjct: 355 ESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKEDKYLKLIKQNCYRL 414

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + L+N++LD   +D+G +KLN     +  L+ E+  S+ +      I I   ++ +    
Sbjct: 415 MKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKEINIIFDTNVEEKII 474

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVF 739
             D  ++ +I   +LSN++ F++ G  + +   +D+ ++++  VK+ G  IP D  +S+F
Sbjct: 475 AVDPDKIERIILNLLSNSIKFTNPGGNIFVN-VKDSEEYVYIHVKDTGVGIPSDKLESIF 533

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF  +    +  + G G+GL +V+SF+ +H G V+I+S     T    ++P+
Sbjct: 534 ERFFQIDKTLKKNKEGTGIGLHLVKSFVEMHKGEVTINSELGKGTEFIIKLPA 586


>gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1478

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 204/445 (45%), Gaps = 38/445 (8%)

Query: 353 DELLE-FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-G 410
           D+ LE F +  N L       + +      Y+++   K    +P   T  V+  S+ R  
Sbjct: 315 DQPLERFFKEDNFLAHLQANDSQQSGFLGRYETTFFTKTGTSVPVSVTASVMKNSSDRIQ 374

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G + + ++++ +     + +  ++ Q    + + +GV V    G I   NPA   ++  E
Sbjct: 375 GIVCLVQDISAR----KRADEALRRQALMFETIYDGVIVTDLKGHILDWNPAAERIFGYE 430

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLE 527
           +  +        +  TC   Y   +   L   ++ S   E +  +    +  D    V E
Sbjct: 431 KTEV--------LGQTCGMVYQPDEATALTQQMLDSLLHEGRWTREIEFIRKDGNKGVCE 482

Query: 528 YSIIPL------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             ++PL      P A   +   +VT+    E  L E  EA  +A   K  F+ ++S+E+R
Sbjct: 483 TVVVPLRDDLGRPIAAIGVNR-DVTERKEYENKLVEAREAAVEAARAKAQFLANMSHEIR 541

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  ++G ++LL T+    LN +Q  +V+ +  S   LL ++NDILD + ++AG M+L+
Sbjct: 542 TPMNGVLGMSELLLTT---DLNPRQLDFVKTLQVSGEHLLGVINDILDFSKLEAGEMRLD 598

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
              + +N  L +V    + +    ++ + ++ D  +    + D  RL QI + ++SN++ 
Sbjct: 599 VDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQICTNLVSNSIK 658

Query: 701 FSSKGSTVILKAA------RDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQR 751
           F+  G  VI  +       +D     F+V++ G  I PED  K +F  F  V ++   + 
Sbjct: 659 FTESGEVVIRVSVHQELEEQDKLQLRFAVRDTGIGINPEDKSK-LFQAFSQVDSSTTRKY 717

Query: 752 RGVGLGLSIVESFINLHGGHVSISS 776
            G GLGL+I +  + + GG + + S
Sbjct: 718 GGTGLGLAICKQLVEMMGGEIGVES 742


>gi|54260390|dbj|BAD61001.1| ethylene receptor [Pyrus pyrifolia]
          Length = 741

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 139/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ +  
Sbjct: 315 ESMRARDLLMEQNIALDLASREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
             L  +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+ +T  L+ +  EV   I 
Sbjct: 373 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSIFREVHDLIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
               + + ++ + + +D  + + + D +RL+QI   ++ NA+ FS +GS  I       +
Sbjct: 432 PVASVRKLSVALNIAADLPVCA-IGDEKRLMQIILNVVGNAVKFSKEGSISITAYVAKSE 490

Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + RD    DF              VK++GS I P+D+  ++F +F        +   G G
Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDI-PNLFTKFTQTQTLASQNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574


>gi|33592925|ref|NP_880569.1| virulence sensor protein [Bordetella pertussis Tohama I]
 gi|34978356|sp|P16575|BVGS_BORPE RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33572573|emb|CAE42160.1| virulence sensor protein [Bordetella pertussis Tohama I]
          Length = 1238

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  IIG  +L        
Sbjct: 693 WIDITERAELLRKLHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQ 752

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +QS  V Y SA S  LL L+ DILD+A ++AG   L      L  L     +     
Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGL 810

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  V+   AR +GD  
Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAA 870

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              FSV + G  I E   + +F  F     +A  G   G GLGLSI    + L GG + +
Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930

Query: 775 SSSDEGVTTINC 786
            S+    TT++ 
Sbjct: 931 RSAPGVGTTVSV 942


>gi|172060667|ref|YP_001808319.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171993184|gb|ACB64103.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1240

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 16/217 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  ++G T+LL+ ++L    SKQ ++V+ +  S   LL +++DIL
Sbjct: 563 KSDFLARMSHEIRTPMNGVLGMTELLQRTRL---TSKQRKFVDTVYRSGQTLLVIIDDIL 619

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI------SDGKLGSFVA 682
           D + ++AG + L      L+ LL++V       + E N R K +      +D        
Sbjct: 620 DFSKIEAGKLTLERIDFNLHQLLDDV-----VALMEPNARRKELELVYQRADSVPQRMRG 674

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI + +L NA+ F+  G   +     D+G  +F + ++G  I  D+   +F  F
Sbjct: 675 DPVRLRQILTNLLGNAIKFTEHGHVALSAEYSDDGRIVFKIADSGIGIAPDVAAQLFRPF 734

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
                   R+  G GLGL+I      + GG +++ S+
Sbjct: 735 QQADSSTARKYGGTGLGLAISRQLAEMMGGTLALDST 771


>gi|115372021|ref|ZP_01459333.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1]
 gi|115370986|gb|EAU69909.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1]
          Length = 336

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 17/281 (6%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           ++T  DDER ++Q   +   D +++  +  PL     +       +  R E  L ++ EA
Sbjct: 45  VLTGTDDERLAVQAVHQGAQDYLVKGQVTGPL----LVRALRYAIERKRVEEGL-KREEA 99

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            R+    +  F+  + ++LR+PL  I G   LL   + G L   Q + V  IS S+  + 
Sbjct: 100 QRQTAVFREQFLAILGHDLRNPLQAISGNAGLLL--RYGGLAEPQRKAVNRISISADRMA 157

Query: 622 NLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            ++ND+LD       G   +  + + L+D+L +V + +     + N  + +  +G  G +
Sbjct: 158 RMINDVLDFTRARLGGGYPVMRARVNLHDVLRQVVEELEVAHAQRNFELSLSGNG-WGEW 216

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
            AD   + Q  S ++ NA+ +S + + V +   RD G+ I   V N G+ IPE+    VF
Sbjct: 217 DADS--IAQAASNLVGNAVQYSPEDTPVAV-VVRDEGEGIRVEVHNQGTPIPEERLPHVF 273

Query: 740 NRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + FV     AH   R G+GLGL I    +  HGG + ++S+
Sbjct: 274 DPFVRGAEGAHNKARTGLGLGLYITHEIVRAHGGTLRVTST 314


>gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 784

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 133/257 (51%), Gaps = 13/257 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +VT+  R E  L    +    A++ K+ F+ ++S+E+R+P+  I+G+ D+L    LG
Sbjct: 349 TVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVL----LG 404

Query: 601 SLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            L    ++  V  I  +   LL+L+NDILDL+ ++AG + ++  ++ L  L+ +++  + 
Sbjct: 405 HLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQ 464

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714
            +  E N+  +V  +G++  S   D  RL Q+   ++ NA+ F+ +GS  +    +K A 
Sbjct: 465 VRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRFMKGA- 523

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D     FS+ + G  I ++    +F  F        R+  G GLGL+I +  I +  G +
Sbjct: 524 DPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEM 583

Query: 773 SISSSDEGVTTINCRIP 789
           S+ S     +T   R+P
Sbjct: 584 SLESELGEGSTFFVRLP 600


>gi|325681395|ref|ZP_08160921.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Ruminococcus albus 8]
 gi|324106885|gb|EGC01175.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Ruminococcus albus 8]
          Length = 508

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 14/235 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L   +++KN F+  VS+ELR+PLT I G+T+ + T        K+   V  I++ +  
Sbjct: 246 EELSNTEQMKNEFISSVSHELRTPLTAIKGWTETVATMYGDVETFKKGMRV--INSETER 303

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS----DG 675
           L  +V ++LD + +    + L   TI   D+L E+ +++   +++   R+  I+    + 
Sbjct: 304 LSQMVEELLDFSRIQDNRLLLQMDTI---DILAELGETVL--IYQERARVLGITLNYFEP 358

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +  FV  D+ RL Q+F  ++ NA+ +S KG TV ++A  + GD   SV + G  I ++ 
Sbjct: 359 DMLPFVYGDKNRLRQVFINVVDNAIKYSDKGDTVSVEAYEEEGDICISVSDTGIGISKED 418

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  +F    H   RRG G+GL++ +  I  HGG ++I S     TT+   +P
Sbjct: 419 LPRIKQKFFKANH--TRRGSGIGLAVADEIIARHGGTLTIDSEQGVGTTVMITLP 471


>gi|284923232|emb|CBG36326.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli 042]
          Length = 778

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L  +Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTVEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|168184825|ref|ZP_02619489.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|182672089|gb|EDT84050.1| sensory box histidine kinase [Clostridium botulinum Bf]
          Length = 615

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 121/231 (52%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++   F+ ++S+EL++PL  I     LL   +      KQ +Y++ I  +   L+ 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMK 415

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD   +D+G +KLN     +  L+ E+  S+ +      I I   ++ +      
Sbjct: 416 LINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTNVEEKIIAV 475

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNR 741
           D  ++ +I   +LSN++ F++ G  + +K  +D G+ ++  VK+ G  IP D  +S+F R
Sbjct: 476 DTDKIERIILNLLSNSIKFTNPGGHIFVK-IKDCGENVYIHVKDTGVGIPSDKLESIFER 534

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  V    +  + G G+GL +V+SF+ +H G V I S     T    ++P+
Sbjct: 535 FFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLPA 585


>gi|144040|gb|AAA22970.1| BvgS protein [Bordetella pertussis]
          Length = 1238

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  IIG  +L        
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQ 752

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +QS  V Y SA S  LL L+ DILD+A ++AG   L      L  L     +     
Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGL 810

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  V+   AR +GD  
Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAA 870

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              FSV + G  I E   + +F  F     +A  G   G GLGLSI    + L GG + +
Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930

Query: 775 SSSDEGVTTINC 786
            S+    TT++ 
Sbjct: 931 RSAPGVGTTVSV 942


>gi|330826615|ref|YP_004389918.1| integral membrane sensor signal transduction histidine kinase
           [Alicycliphilus denitrificans K601]
 gi|329311987|gb|AEB86402.1| integral membrane sensor signal transduction histidine kinase
           [Alicycliphilus denitrificans K601]
          Length = 585

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 17/234 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----Q 608
           R L       + A   K+ F+  +S+ELR+PLT+I GF +L++      L  +QS    Q
Sbjct: 331 RRLARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPLVREQSALIRQ 390

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENN 666
             E+++A       L+ +ILDLA V+AG M  +   + L  L++EV +   ++  +    
Sbjct: 391 GAEHLNA-------LLTEILDLAKVEAGSMPTHPEPVALPVLVHEVAELFRVSAVVKSLQ 443

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725
           +  +++ + +    V DR RL QI + +LSNA+ F+++G   + ++   D    +F V +
Sbjct: 444 LEARLLPEAE-QPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTD 502

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G  I  ++ + +F +F     R   Q  G GLGLS+  +   L GG +++ SS
Sbjct: 503 TGPGIAPELHEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSS 556


>gi|257487947|ref|ZP_05641988.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331008635|gb|EGH88691.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 998

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 10/233 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---Q 608
           ER +  + EA+R  DE+    V  VS++LR+P++ II    +++   +G  +S+     +
Sbjct: 524 ERQVQREQEAVRLRDEL----VAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRR 579

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++T + +L+ D+LD A ++AG  +L+   + +  LL E    +     E NI 
Sbjct: 580 ALGTIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIE 639

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +   L    AD +R+ Q+ S ++ NA+ F+ KG  + + A     + +F V ++G 
Sbjct: 640 LNCTAAQGL-VINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGI 698

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEG 780
            IP +    +F R+ S    G  RG GLGL I +  I  HGG + + SS D G
Sbjct: 699 GIPAEHLPYIFQRYWS-VKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSG 750


>gi|255527026|ref|ZP_05393917.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296186976|ref|ZP_06855376.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255509282|gb|EET85631.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296048414|gb|EFG87848.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 518

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  K E+ R A++ K+  + +VS++LR+PLT+I G+  L K  K  S  ++  +Y+  
Sbjct: 275 KELNRKIESERNAEKTKSDLITNVSHDLRTPLTSIKGYIGLAKDGKYKS-EAELQEYLNI 333

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KV 671
               S  L  L+N++ +   +    + LN   I  N LL ++ + +     ENN+ I K 
Sbjct: 334 AYNKSEKLEVLINNLFEYTKLTNKGISLNKQNISFNGLLEQLIEELYVICEENNVVIEKS 393

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I D K+ ++V D  +++++F  +L N++ +S K   + +   +++   + +VKN   ++ 
Sbjct: 394 IPDEKICAYV-DGDKMVRVFENLLMNSIRYSPKPGEINVDLYKEDKFVVVAVKNKCENVD 452

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           E+  K +F+RF  V  +      G GLGL+I +S + LHGG +
Sbjct: 453 EEELKKIFDRFYRVDKSRAQATGGSGLGLAIAKSIVELHGGKI 495


>gi|255532397|ref|YP_003092769.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255345381|gb|ACU04707.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 586

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 114/217 (52%), Gaps = 1/217 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ DE K +F+  VS+EL++P+++I     L+   ++G +N +Q + V++I      LL
Sbjct: 353 FKELDEAKTNFIATVSHELKTPISSIKMSLKLMDDERVGVMNPEQKELVQHIREDCGRLL 412

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            + +++LDLA V+ G ++LN+       +      ++  +  + +I +++IS  KL    
Sbjct: 413 KITSELLDLAQVETGNLQLNFVKSDPRKIAIYAMDAVRFQAEQKSIELELISKNKLPQIN 472

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++   +    LSNA+ +S+  S VI++    N    FSV++ G  I E   K +F +
Sbjct: 473 VDIEKTAWVLVNFLSNALRYSAVKSKVIVQVIEKNDTIEFSVRDFGKGIEEQYQKRLFEK 532

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
           +      G  + G GLGL+I + FI    G + + S+
Sbjct: 533 YFQVPTDGNNKSGSGLGLAISKDFIEAESGKIWVESA 569


>gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1129

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 136/254 (53%), Gaps = 12/254 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           +VT  ++    L +  E   +A+  K++F+ ++S+E+R+P+  ++G T+L L+T+     
Sbjct: 465 DVTALIQNAVELRKAKEEAERANRAKSAFLANMSHEIRTPMNAVLGMTELALETT----Y 520

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q +Y+E I  +S  L++++NDILD++ +++G M+++     L ++  +    +A + 
Sbjct: 521 DEDQREYLETIHEASCSLMDIINDILDISKIESGHMEIDSHPFDLGEVAWKSASYLAKEA 580

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           H   + + V  D +L  S++ D  R+ QI   +LSNA+ F+ +G  ++   A +    + 
Sbjct: 581 HGKGLELNVDIDEELAESYIGDSVRIRQIMVNLLSNAVKFTDEGEILMSVKAMEKTAKMD 640

Query: 722 SV----KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           SV    ++ G  + E     +F+ F+       +R  G GLGLSI +  + + GG + + 
Sbjct: 641 SVEIRIEDTGIGLSEKEIARIFSPFIQADVSTTKRYGGTGLGLSICKKLVEIMGGKLEVQ 700

Query: 776 SSDEGVTTINCRIP 789
           S+    +  +  IP
Sbjct: 701 SAPGKGSVFSFTIP 714


>gi|220916157|ref|YP_002491461.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954011|gb|ACL64395.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 413

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 5/233 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L + D ++  F+ H ++ELRSP+  I+   +LL+ +      +     +  ++ S+  L 
Sbjct: 176 LEEVDRLRARFLAHATHELRSPVNAIVALAELLRMACARRSLADVEAKIPVLARSAAELR 235

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             VN++LDL+ ++AG M+++ +   L  L++EV  ++  ++   +  ++V +D   G  +
Sbjct: 236 GTVNELLDLSKLEAGRMEVSIAPADLGALVSEVAATV--RLLVGDAPVEVRADAAPGLLL 293

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  ++ +I   + +NA  F+  GS  +  A    G  + +V + G  I E     +F 
Sbjct: 294 ETDGPKVRRILLNLGANAAKFTRAGSVRLAGAPDGRGGVLLTVADTGCGIDEADLPRLFV 353

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F  + +A    R G GLGL+I  S   L GG VS+ S     TT   R+P++
Sbjct: 354 PFSQLEDAATRTREGTGLGLAITRSLATLLGGTVSVESRRGAGTTFTVRLPAR 406


>gi|119962003|ref|YP_946601.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
 gi|119948862|gb|ABM07773.1| putative signal transduction histidine kinase [Arthrobacter
           aurescens TC1]
          Length = 498

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 17/238 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA ++++     FV   S+ELR+PLT I G+T+LL+ ++  + + ++S  +  + + S  
Sbjct: 265 EARQESETKVRQFVADASHELRTPLTAIRGYTELLRMTENFTEDGRKS--LARVQSQSER 322

Query: 620 LLNLVNDILDLATVDAG----IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +  LV D+L LA +D G    +  ++ + +V+  + +E        M  ++I    + D 
Sbjct: 323 MTTLVEDLLLLARLDEGQPVKVEDVDLTQLVIETVSDE------KVMAPDHIWQLQLPDE 376

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDM 734
            + +   D  +L Q+ + +LSNA   +  G+TV+       +G  + SV +NG  IPED 
Sbjct: 377 PI-TVRGDATQLHQVLANLLSNARKHTDPGTTVVTGVMLSADGSAVVSVTDNGPGIPEDF 435

Query: 735 CKSVFNRFV-SNAHRGQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F+RF  ++A R    G  GLGLSIVES ++ HGG V ++S   G T    R+P+
Sbjct: 436 QGRIFSRFARADAARSGSEGTSGLGLSIVESIVSAHGGSVEVTSR-PGRTEFALRLPT 492


>gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1095

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 18/239 (7%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQS 607
           ER   E N A  +A+E    K+ F+ ++S+E+R+P+  IIG + L L+T     LN+KQ 
Sbjct: 313 ERKNVELNAARLEAEEATRAKSEFLANMSHEIRTPMNAIIGLSYLCLQTD----LNNKQH 368

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  + +S+  LL ++NDILDL+ V+AG +++ +    L D+ + +   I  K  E  +
Sbjct: 369 DYLTKVHSSAQSLLGIINDILDLSKVEAGKLEIEHIPFALQDVTDHLTSIIHVKAQEKQL 428

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDF 719
              V +   +  F V D  RL QI   +  NA+ F+S+G  ++        +        
Sbjct: 429 HFHVETAIDIPPFLVGDPLRLGQILINLCGNAIKFTSQGQVMLQIVLAEQTEQTEQTARI 488

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F++K+ G+ +  +    +F  F        R+  G GLGL I +  +   GG +S+ S
Sbjct: 489 HFAIKDTGTGMTPEQISRLFQAFSQADSSTTRQFGGTGLGLVISKQLVETMGGEISVES 547


>gi|77459260|ref|YP_348767.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77383263|gb|ABA74776.1| sensor protein RcsC putative two-component system, sensor kinase
           [Pseudomonas fluorescens Pf0-1]
          Length = 936

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 13/262 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F +++   + E AL    ++   A+E K  F+  +S+E+R+PL  ++G  +LL  ++
Sbjct: 424 LCAFSDISARRQIEAALERARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQ 483

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L   +++Q  Y+  I  SS  LL L+ D+LD++ ++AG + L  S   +  L  EV Q  
Sbjct: 484 L---DTQQKSYLRAIEGSSATLLQLICDVLDVSKIEAGQLALELSDFSIVALAQEVVQGY 540

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
           A       +++    D +L  S + D  R+ QI + +LSNA+ F+  G  V+ +      
Sbjct: 541 AAAAQSKGLQLYACFDPQLPDSLIGDISRVRQILNNLLSNAVKFTDSGRVVLRVNVLSRE 600

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770
           G+ +   + V + G  I  D    +F  F     RG      G GLGL I     NL  G
Sbjct: 601 GERVCVQWQVSDTGRGIAHDDQAFIFEPFYQT--RGNSHVIAGTGLGLPICLRLTNLMNG 658

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            + + S     ++ +  +P ++
Sbjct: 659 TLRMVSEPGLGSSFSLTLPLEQ 680


>gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus LGP32]
 gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio splendidus LGP32]
          Length = 1129

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 123/241 (51%), Gaps = 7/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++NE L+ A+++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ 
Sbjct: 444 KTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPIPANQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670
           I  S   L  LV+D+LD   +  G + +N S + L+   + V +     +    IRI  +
Sbjct: 504 IINSGQRLATLVDDLLDYHKMRYGSLDINKSAVDLSAATSLVLELSHHLLGNKPIRIINQ 563

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V SD  LG   +D QRL Q+   ++ NA+ ++S+G  VI  +  D+ +    V + G  I
Sbjct: 564 VPSD--LGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDD-NIRVQVVDTGQGI 620

Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +
Sbjct: 621 PAEYLEHIFEPLIQAGQDSSNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTL 680

Query: 789 P 789
           P
Sbjct: 681 P 681


>gi|46908753|ref|YP_015142.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094035|ref|ZP_00231765.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|46882025|gb|AAT05319.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017585|gb|EAL08388.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|328465185|gb|EGF36453.1| sensor histidine kinase [Listeria monocytogenes 1816]
          Length = 459

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L+K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L++   ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731
            D    ++  D + L Q++S +L+NA+ F+ +G  + +            V+++G  I  
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGK 398

Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           EDM K +F+RF  +N  R +  G  GLGLSI +  I LH G +++ SS E  TT   ++P
Sbjct: 399 EDMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLP 457


>gi|332382337|gb|AEE67184.1| virulence sensor protein [Bordetella pertussis CS]
          Length = 1238

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  IIG  +L        
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQ 752

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +QS  V Y SA S  LL L+ DILD+A ++AG   L      L  L     +     
Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGL 810

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  V+   AR +GD  
Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAA 870

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              FSV + G  I E   + +F  F     +A  G   G GLGLSI    + L GG + +
Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930

Query: 775 SSSDEGVTTINC 786
            S+    TT++ 
Sbjct: 931 RSAPGVGTTVSV 942


>gi|327188568|gb|EGE55778.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CNPAF512]
          Length = 759

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591
           A   L   +V   V  ER L +  E  R+  E     K+  +  VS+E+R+PL+ I+G T
Sbjct: 206 ADGRLLLHSVARDVTEERLLAQGREQARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMT 265

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  ++L     +Q  Y+  I  S   L  LV D+LD +T++ G  +L+  +  L  LL
Sbjct: 266 HLLAETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFELHPRSESLRKLL 322

Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V + +A + HE  I I   +S     +   D  RL Q+   ++ NA+ F+  G  V +
Sbjct: 323 ESVVEMLAHRAHEKGIEIGATVSSDVPQNMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 381

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
           + + D G+ + +V ++G  +  +    VF  F        +  G GLGL+I    +   G
Sbjct: 382 RVSLDAGNLLITVADSGPGMTAEEQARVFGEFEQGGTVADKSAGTGLGLAISARIMREFG 441

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G ++++S     +    R P
Sbjct: 442 GALTVASEKGLGSEFTIRFP 461


>gi|310824674|ref|YP_003957032.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397746|gb|ADO75205.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 378

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 17/281 (6%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           ++T  DDER ++Q   +   D +++  +  PL     +       +  R E  L ++ EA
Sbjct: 87  VLTGTDDERLAVQAVHQGAQDYLVKGQVTGPL----LVRALRYAIERKRVEEGL-KREEA 141

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            R+    +  F+  + ++LR+PL  I G   LL   + G L   Q + V  IS S+  + 
Sbjct: 142 QRQTAVFREQFLAILGHDLRNPLQAISGNAGLLL--RYGGLAEPQRKAVNRISISADRMA 199

Query: 622 NLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            ++ND+LD       G   +  + + L+D+L +V + +     + N  + +  +G  G +
Sbjct: 200 RMINDVLDFTRARLGGGYPVMRARVNLHDVLRQVVEELEVAHAQRNFELSLSGNG-WGEW 258

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
            AD   + Q  S ++ NA+ +S + + V +   RD G+ I   V N G+ IPE+    VF
Sbjct: 259 DADS--IAQAASNLVGNAVQYSPEDTPVAV-VVRDEGEGIRVEVHNQGTPIPEERLPHVF 315

Query: 740 NRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + FV     AH   R G+GLGL I    +  HGG + ++S+
Sbjct: 316 DPFVRGAEGAHNKARTGLGLGLYITHEIVRAHGGTLRVTST 356


>gi|256960921|ref|ZP_05565092.1| sensor histidine kinase [Enterococcus faecalis Merz96]
 gi|256951417|gb|EEU68049.1| sensor histidine kinase [Enterococcus faecalis Merz96]
          Length = 393

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 126/230 (54%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ ++ K+  + +VS+++R+PLT+ IG+  L++  +  S     +  +  Y+ A    LL
Sbjct: 157 RRIEKSKDELITNVSHDIRTPLTSTIGYLGLIEDRQFHSQEDLLKYTHTAYVKAKQMKLL 216

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             V+D+ +   V    + ++ +T  +  L+ ++      +  + N++I+V ++       
Sbjct: 217 --VDDLFEYTKVRQPSVPIHTTTFDMAQLIEQLAADFELEAKKINMQIQVKANPASLMME 274

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L+++F+ +LSNA+ +   G  ++++  +   + I +V+N+G +IP+     +F+R
Sbjct: 275 GDTEKLVRVFNNLLSNALKYGKGGHHIVMEVDKVGTEAIIAVRNDGPAIPKHSLDQLFDR 334

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGL+I +S + LHGG++  + SD+  T+    +P
Sbjct: 335 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYI-YAKSDQKWTSFIIHLP 383


>gi|167836942|ref|ZP_02463825.1| response regulator/sensor histidine kinase [Burkholderia
           thailandensis MSMB43]
          Length = 340

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L+K    G L  +Q + +
Sbjct: 55  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVKE---GLLAPEQQRLL 107

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +RI+
Sbjct: 108 SLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRIR 167

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  +  + + D  RL QI   ++ N + ++  GS  +   A D+ D     + +V +
Sbjct: 168 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTEHGSVSVRVRAADDVDGSVEIVATVVD 227

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D    +F  FV  A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 228 TGIGIAADELTRLFTPFV-RAARGARRTESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 286

Query: 783 TINCRI 788
           T   RI
Sbjct: 287 TATARI 292


>gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R E A  +  E  R+A      K+ F+ ++S+E+R+P+  +IG   LL +     L ++Q
Sbjct: 144 RLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSE---DLTAEQ 200

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV+ I  S   LL L+N ILD + ++AG ++L+Y      +L+ EV   +  +    N
Sbjct: 201 LSYVKVIKTSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQN 260

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF-- 719
           + +   IS G       D  RL Q+   ++ NA+ F+  G   I      A     +F  
Sbjct: 261 LALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEFSC 320

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F+VK++G  IP +    +F RF        R+  G GLGL+I    + L GG V + S
Sbjct: 321 YFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVES 379


>gi|86143811|ref|ZP_01062187.1| two-component system sensor histidine kinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829854|gb|EAQ48316.1| two-component system sensor histidine kinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 804

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 132/258 (51%), Gaps = 15/258 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F + + S +  R L E N   +   + +   +  +++++RSPL  ++GFTDLLK + 
Sbjct: 284 IMIFKDASRSQQYSRELEESNATAQSLLKSREQLMATITHDMRSPLNTVLGFTDLLKKT- 342

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL-----NYSTIVLNDLLNE 653
             ++++KQ +Y++ +  S   +L LVND+LD A ++AG + +     N   ++ + ++  
Sbjct: 343 --AVDAKQMRYLDTVQKSGDYILKLVNDLLDFAKLEAGKISVEKVPFNPKKLIEDVIVVS 400

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + Q + T +  +      I D     F++D  R+ QI + +++NA  F+ +GS + +   
Sbjct: 401 LPQPLKTGVEVHT----EIPDELDTIFLSDPFRIKQILANLITNAYKFTEEGS-ITVALH 455

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           +D  +  F + + G  IP++  + +F  F       QR+  G GLGLSI +    L  G 
Sbjct: 456 KDGKNLRFKIIDTGCGIPKEKQQLIFKEFSQAEETTQRKYGGFGLGLSISQKLTELLEGK 515

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     +T    +P
Sbjct: 516 LQLKSIPGKGSTFTLIVP 533


>gi|307546290|ref|YP_003898769.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
 gi|307218314|emb|CBV43584.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
          Length = 725

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 6/228 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K+ F+  VS+E+R+PL  +IG ++LL    L         Y + I  S+  LL L+
Sbjct: 226 ASQAKSEFLATVSHEIRTPLNGVIGMSELLSEHHL---PDGARHYADTIHDSAQRLLELI 282

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           NDILD + ++AG + L   ++ L++L+N      A       I +    D  L +  V+D
Sbjct: 283 NDILDFSKIEAGRLDLETRSLSLSELVNGALSLFAPHAEAKGIHLVAWIDPALPTHIVSD 342

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QI   +LSNA+ F+ +G   +     D+G+    V + G  I E     +F  F 
Sbjct: 343 PGRLRQILLNLLSNAIKFTERGEVRVSAFVADDGELGIDVVDTGCGIDEQRQAQLFEPFR 402

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  RR  G GLGL+I +  +    G + + S     +    R+P
Sbjct: 403 QGDPSTARRFGGTGLGLAICKRLVEALRGRIGMESQPHLGSRCWVRLP 450


>gi|166030476|ref|ZP_02233305.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC
           27755]
 gi|166029728|gb|EDR48485.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC
           27755]
          Length = 470

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR  ++ +  FV +VS++ RSPLT+I G+ + +    +      Q +Y+  I   +  L 
Sbjct: 239 LRDMEDYQKKFVANVSHDFRSPLTSIKGYVEAIADGTIPP--EMQGKYLNIILFETERLT 296

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L  D+L L   D   + L+     L++++  V  S   +  +  I I+++   K    V
Sbjct: 297 DLTKDLLTLNEFDTKNLLLDKVPFDLHEMIKNVAASFEGRCTQKKISIELVFARKHLKVV 356

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
           AD++++ Q+   +L NA+ FS + S + ++   + GD I+ SVK+ G  IP +    ++ 
Sbjct: 357 ADKRKIQQVLYNLLDNAIKFSDQDSIITIETT-ERGDKIYTSVKDYGIGIPRNALNKIWE 415

Query: 741 RFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           RF  S+  RG+ ++G GLGL+IV+  I  HG ++++ S+ EGV T
Sbjct: 416 RFYKSDLSRGKDKKGTGLGLAIVKEAIQAHGENINVVST-EGVGT 459


>gi|118478526|ref|YP_895677.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196042701|ref|ZP_03109940.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225865179|ref|YP_002750557.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|229185457|ref|ZP_04312639.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1]
 gi|118417751|gb|ABK86170.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196026185|gb|EDX64853.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225790052|gb|ACO30269.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|228598045|gb|EEK55683.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1]
          Length = 458

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS++G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELEFSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|313683144|ref|YP_004060882.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313156004|gb|ADR34682.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 1421

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 130/250 (52%), Gaps = 11/250 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+   AERA+    E   +A+  K+ F+ ++S+E+R+P+  I+G + ++  S + 
Sbjct: 682 TLQDITERKAAERAMLIAKEQAEEANISKSRFLANMSHEIRTPMNAILGLSQVMLDSDMA 741

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               K+  ++  I +SS +LL ++NDILD + ++A  ++L +    L ++L ++K     
Sbjct: 742 ---PKEKDFLLKIHSSSKMLLGIINDILDYSKIEANKLELEHKNFNLENVLAQLKVLFTQ 798

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716
              E+ + +       +    V D  RL Q+ + +LSNA+ F+  G+  +   LK   +N
Sbjct: 799 SAAEHGLELYFHKKSDVPEIIVGDELRLDQVLTNLLSNALKFTHHGTVTLAIELKERHEN 858

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              I FS+ + G  I ++    +F  F        R+  G GLGL+I +  +N  GG +S
Sbjct: 859 RAIIGFSLTDTGIGISDEDISKLFQPFNQADSSMTRKYGGTGLGLAISKRLVNAMGGELS 918

Query: 774 ISS-SDEGVT 782
           +SS   EG T
Sbjct: 919 LSSVKGEGST 928


>gi|255535150|ref|YP_003095521.1| Sensor histidine kinase [Flavobacteriaceae bacterium 3519-10]
 gi|255341346|gb|ACU07459.1| Sensor histidine kinase [Flavobacteriaceae bacterium 3519-10]
          Length = 885

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 35/288 (12%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------- 565
           ++L D V +   I LP    +L      D++   + LTE +  LRK              
Sbjct: 597 KILIDGVTKEDKITLPEVLRILE--ESKDNISMNKQLTEHSHQLRKMSEKLQDANETLLI 654

Query: 566 -DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            D  K+ F+  V++ELR+P+T I   ++LL   +      K+  ++E I + S  L  ++
Sbjct: 655 KDRQKDDFLDSVAHELRTPITAIRATSELLMDDEDMPTEIKK-DFLENIISESDRLAEII 713

Query: 625 NDILDLATVDAGIMKLN--YSTIV------LNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           NDIL L  ++AG   LN  +  IV      L  LL   +Q      H ++  + ++ +  
Sbjct: 714 NDILYLDKLEAGTTPLNLEHGNIVNSYHKALKPLLQLFEQK-----HLHHSEVNLLQEE- 767

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             +FV D  +++Q+F  IL NA+ F+     + +K    +G    S+ N G +IP++  +
Sbjct: 768 --TFVYDEMKMIQVFQNILGNALKFAGDQGMIQVKFQEKDGRLKVSIFNTGKTIPDEDLE 825

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            +F +F  + H+  R+  G GLGL+I +  +N HGG ++  + + GVT
Sbjct: 826 FIFEKFYQSKHQNLRKPVGSGLGLAICKRILNAHGGDIAAVNKEIGVT 873


>gi|220925321|ref|YP_002500623.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219949928|gb|ACL60320.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 782

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 7/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           AER L +K +A   A+  K+ F+ ++S+ELR+PL  I+GF ++++    G L S K  +Y
Sbjct: 508 AERYLDQKAQA-ESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGQLGSEKYREY 566

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +S   LL++++DILD++ ++A  + L    + + + L    + IA       + +
Sbjct: 567 CRDIRSSGHYLLSVIDDILDMSRIEARRVTLVKQPVPVAEALERALKLIAEPARAKGLTL 626

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V         +AD + L QI   +L NA+ F+ +   V ++  R        V+++G  
Sbjct: 627 SVEMSAD-AVVLADERALHQILVNLLQNAVKFTPEAGRVAVRTRRALDAVHIFVEDSGIG 685

Query: 730 IPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           IP+ +   +   F +  SN  R   +G GLGL+I  S   LHGG + I S     T +  
Sbjct: 686 IPKAVLPKLGAPFEQVESNFSRSF-KGSGLGLAISRSLTELHGGRLRIRSEVGCGTIVLV 744

Query: 787 RIP 789
           R+P
Sbjct: 745 RLP 747


>gi|325289012|ref|YP_004265193.1| integral membrane sensor hybrid histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964413|gb|ADY55192.1| integral membrane sensor hybrid histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 646

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 19/244 (7%)

Query: 551 AERALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           AE+AL           E L+KAD  KN F+  +S+ELR+PL +++    L    KL + +
Sbjct: 251 AEKALQHSEQRALALVEDLKKADYQKNRFLSSLSHELRNPLASMMMSLSLF---KLAAPD 307

Query: 604 SKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           S Q +Q +E     +  L  LV+D+L++  +    +KLN   + LN L+    ++     
Sbjct: 308 SPQAAQAMEIFERQTIQLSRLVDDLLEVTRITQNKIKLNTGLVELNSLVQRTVKNYKQMF 367

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI 720
            E  + ++V    +    +AD  RL+QI   +L NA+ F++ G    VI+    D    I
Sbjct: 368 TEKGLSLEVEDYVQPVYVLADSARLIQIIENLLYNALKFTNTGGEVRVIVSKDEDKSAAI 427

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             VK+NG  I +++ + +F  FV      AH     G+GLGL+IV+  + LHGG V   S
Sbjct: 428 IQVKDNGMGIKQELLEDLFLPFVQADLTLAHSSG--GIGLGLAIVKGMVELHGGKVFAKS 485

Query: 777 SDEG 780
              G
Sbjct: 486 DGLG 489


>gi|323359409|ref|YP_004225805.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
 gi|323275780|dbj|BAJ75925.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
          Length = 510

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 124/259 (47%), Gaps = 25/259 (9%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLN-S 604
           D V A  +  ++NE      E+   FV   S+ELR+PL +I GF++L L+  +    + S
Sbjct: 253 DRVDASLSARQRNE------ELMRRFVADASHELRTPLASIRGFSELSLRAMRQAHDDES 306

Query: 605 KQ---------SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           +Q          Q +E I A S  +  LV D+L LA +D G  +L Y T+ L  L  E  
Sbjct: 307 RQRTAMAVETTEQSLERIQAQSIRMTTLVEDLLLLARLDEG-QELVYGTVDLTRLAVEAV 365

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                   ++  +I V  D        D  RL Q+ + +L+NA   +  GS V +   R+
Sbjct: 366 GDARPAGPDHVWKIDV--DDHPVELAGDAARLHQVVANLLANARTHTPAGSEVCVSVRRE 423

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
             D +  V ++G  +   +   +F RF + A R + R   G GLGLSI  + +  H G +
Sbjct: 424 GDDAVLRVHDDGPGVDPAVAAQLFERF-ARADRSRDRKTGGTGLGLSIARAIVEAHRGSI 482

Query: 773 SISSSDEGVTTINCRIPSK 791
           S+ S+  G TT   R+P+K
Sbjct: 483 SVRST-PGDTTFEVRLPAK 500


>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 921

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 19/240 (7%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + R E  L  K EA   A + K+ F+  +S+E+R+P+  ++G T+LL  S    LN +Q 
Sbjct: 253 ATRTEELLRAK-EAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDS---GLNHEQR 308

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + E +  S   LL ++NDILD + +++G ++L      L DLL +     A    +   
Sbjct: 309 HFAEAVENSGRHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKK-- 366

Query: 668 RIKVISDGKLGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           R+++I+D  L   V      D  RL QI   + +NA+ F+ +G  V+    L    D   
Sbjct: 367 RLELIAD--LPPEVRRCVRGDPFRLRQIVGNLANNAIKFTERGEVVVRARLLGEGTDGYR 424

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV++ G  IP    + +F +F  +  +   Q  G GLGL+I    + L GG + + S
Sbjct: 425 LRISVEDTGIGIPPHAQQKIFEQFSQLDGSTTRQFGGTGLGLAICRRLVGLMGGEIGVDS 484


>gi|187777063|ref|ZP_02993536.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC
           15579]
 gi|187773991|gb|EDU37793.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC
           15579]
          Length = 619

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 125/236 (52%), Gaps = 10/236 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-----KQSQYVEYISASS 617
           R+ +++   F+ ++S+EL++PL  I     LL   +   +N      KQ +Y++ I  + 
Sbjct: 356 REYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYE-KDINKDINYEKQDKYLKLIKQNC 414

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ L+N++LD   +D+G +KLN     +  L+ E+  S+ +      I I   ++ + 
Sbjct: 415 YRLMKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTNVEE 474

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCK 736
                D  ++ +I   +LSN++ F++ G  + +    D+GD+++  VK+ G  IP D  +
Sbjct: 475 KIIAVDPDKIERIILNLLSNSIKFTNLGGNIFVNII-DSGDYVYIHVKDTGVGIPSDKLE 533

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           S+F RF  V    +  + G G+GL +V+SF+ +H G V+I+S     T    ++P+
Sbjct: 534 SIFQRFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGDVTIASELGKGTEFIIKLPA 589


>gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
 gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
          Length = 1128

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           +D  D    +  SF+  R+S++  +EL+     E         Q ++T            
Sbjct: 404 ADRKDEIGRLALSFERMRRSIKEKIELIKSQNQELE-------QNLVT------------ 444

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            + ++NE L+ A+++K+ F+   S+ELR+PL  +IG  + + +   G + +     ++ I
Sbjct: 445 -IKKQNEELQLANKLKDEFLATTSHELRTPLHGMIGIAEAMISGANGPIGANHKYQLDII 503

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   L  LV+D+LD   +  G + +  S I L      V +     + E  IRI    
Sbjct: 504 VNSGQRLAGLVDDLLDYHKMRYGNLDIERSAISLTGATQLVLELSHHLLGEKKIRIINQV 563

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L    AD QRL Q+   ++ NA+ ++++G  V+   A D+      V + G  IP  
Sbjct: 564 LEPLPYVSADPQRLEQVLYNLVGNAIKYTNEGKIVLSATAMDD-HIRVQVVDTGQGIPAQ 622

Query: 734 MCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F   V   H     R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 623 QLEHIFEPLVQAGHDSGHYRQGAGLGLSISRQLIELMGGSLYVSSQPHVGTTFSFTLP 680


>gi|172063287|ref|YP_001810938.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171995804|gb|ACB66722.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 663

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R L    +A  +ADE   +K+  +  VS+ELR+PL  I G+ ++L++   G       Q 
Sbjct: 267 RMLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRS---GEGQGFAHQA 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L  +V D+LD +++  G ++L  + + L  ++ E  + I      N + +
Sbjct: 324 IDAIDRSARSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQESVREIGETAEANGLDL 383

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                       AD +RL Q+ S +LSNA+ F+ +G  + +           SV + G  
Sbjct: 384 STECAMPSCVIAADAERLRQLLSNLLSNAIKFTPRGGRIKVSLNPAGARVRLSVADTGQG 443

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
           I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V+ +S   G  TT+  
Sbjct: 444 ISAERLPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTV 503

Query: 787 RIPS 790
            +P+
Sbjct: 504 MLPA 507


>gi|312890095|ref|ZP_07749639.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297627|gb|EFQ74752.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 936

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 14/251 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+A  E  E   KA++ K+ F+  +S+E+R+P+  ++G   LL+ +   +LN++Q +Y
Sbjct: 403 QQEQAAREDAE---KANQAKSVFLATMSHEIRTPMNGVLGMASLLEET---TLNNEQREY 456

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR- 668
           V  I  S   LL++++D+LD + +++G + L+     L   + EV    + K+    +  
Sbjct: 457 VSTIKNSGETLLSVISDVLDFSKIESGKLDLDPHQFNLRQCIEEVMDIFSGKVARIGLDL 516

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNG-DFIFSV 723
           +  I        +AD  RL Q+   ++ NA+ F+SKG       +L    D+  +  F V
Sbjct: 517 VYQIGYEVPAHIIADSLRLKQVLINLVGNAIKFTSKGEVFLGVSLLSRTDDHSLELAFEV 576

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  IP D    +F  F        RR  G GLGL+I E  ++L  G +++ S  +  
Sbjct: 577 KDTGIGIPRDKLPRLFKAFSQIDSSTTRRYGGSGLGLAICERLVHLMEGQITVESQLDLG 636

Query: 782 TTINCRIPSKE 792
           TT    I ++E
Sbjct: 637 TTFRFSIKAEE 647


>gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 935

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 14/246 (5%)

Query: 555 LTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L   NE LRK       A ++K+ F+ ++S+E+R+P+  I+GF +LL   +    N ++ 
Sbjct: 315 LKNSNEMLRKVSKEAQQASKMKSEFLANMSHEMRTPMNAILGFAELLMNDE---TNLEKM 371

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y++ I  S   LL+L+ND+LDL+ ++A    L  S      L+ E+ ++     +   +
Sbjct: 372 KYLKTIYRSGEHLLSLINDVLDLSKIEAARFDLIISPYSPAKLVKEITETYLPMAYSKGL 431

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
                   ++  +V  D  R+ Q+ + ++SN + F+ KG   +L    D    I++V++ 
Sbjct: 432 HFANSITERVPEYVDGDEFRVRQVLTNLVSNGLKFTDKGYVSVL-LDYDGHHLIYTVQDT 490

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           GS +  +    +F  F+       R+  G GLGL+I +  + L GG +   S     + +
Sbjct: 491 GSGVSREEIDKIFEPFIQADGTMSRKFGGTGLGLTITKKIVELMGGSIRFESKVGEGSKV 550

Query: 785 NCRIPS 790
             RIPS
Sbjct: 551 TVRIPS 556


>gi|258563454|ref|XP_002582472.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704]
 gi|237907979|gb|EEP82380.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704]
          Length = 2359

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 133/259 (51%), Gaps = 32/259 (12%)

Query: 552  ERALTEKNEALRKADEI-----------------KNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL +  EA +KA E                  K+ F+ ++S++LR+P+T +IG ++LL
Sbjct: 1852 KRALAQAREAEQKAKEAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELL 1911

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   SL+ +Q  YVE I   +  LL L+NDILD + ++AG MK+    + L   + EV
Sbjct: 1912 KQT---SLDRQQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVTTVPLNLRQTIAEV 1968

Query: 655  KQSIATKMHENNIR-IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
             +++     +  +  I+   D      V  D  RL QIF  +LSN+  F+ KGS TV  K
Sbjct: 1969 VRALRYTHRDRGLETIEDFDDIDPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAK 2028

Query: 712  AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
             A ++ + I    +V + G  I  D    +F  F S A     R   G GLGLSI ++ I
Sbjct: 2029 VAEESENTIRVTCTVADTGIGISNDHMARLFRPF-SQADSSTARSYGGSGLGLSICKAII 2087

Query: 766  -NLHGGHVSISSSDEGVTT 783
             ++ GG + +  SD GV T
Sbjct: 2088 EDVLGGKIWL-HSDVGVGT 2105


>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
 gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
 gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2062

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E    A   K+ F+ ++S+E+R+P+  IIG TDL   ++L    ++Q +Y+  + +S+  
Sbjct: 1338 ETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL---TAEQREYLSMVQSSAGS 1394

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
            LL ++NDILD + ++AG ++L+ +   L   L +  ++++ + H+  I +   I+     
Sbjct: 1395 LLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPD 1454

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI--FSVKNNGSSIPED 733
            S + D  RL QI + ++ NA+ F+S+G     V ++ +   G+ +  FSV + G  IP+D
Sbjct: 1455 SLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFSVIDTGIGIPKD 1514

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
                +F  F        RR  G GLGL+I    + L  G +S +S S +G T
Sbjct: 1515 KLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGST 1566


>gi|308049363|ref|YP_003912929.1| integral membrane sensor hybrid histidine kinase [Ferrimonas
           balearica DSM 9799]
 gi|307631553|gb|ADN75855.1| integral membrane sensor hybrid histidine kinase [Ferrimonas
           balearica DSM 9799]
          Length = 788

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 131/262 (50%), Gaps = 26/262 (9%)

Query: 539 MLTFVNVTDSVRAERALTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           M+   N+ DS+R +R   +KN+AL      A++ K+ F+ ++S+E+R+PL  I GF  LL
Sbjct: 281 MMDNENLIDSLREQR---DKNQALTARANHANQAKSLFLANMSHEIRTPLNGISGFVSLL 337

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K ++   L+ +Q +YV + + +   L  ++ DILD + +++G M L  + I +  LL++V
Sbjct: 338 KRTR---LSQEQREYVNHCANTVNNLTGIIGDILDFSKIESGEMVLENAVIDVLPLLHDV 394

Query: 655 KQSIATK--MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              +  +   H N+IR  + +  +  +   D  RL Q+   +LSNA+ F+  G   +  A
Sbjct: 395 YSMVQNQNLAHHNDIRFDIGAMPQ--TLYGDEVRLKQVLVNLLSNAIKFTQYGQIRLTMA 452

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG------QRRGVGLGLSIVESFIN 766
             D      +V + G      MC S          +       +  G GLG+ I+E   N
Sbjct: 453 VPDGHTLEITVSDTGIG----MCPSKLEHIRKPFEQADLSITKEFGGTGLGIPIIERIAN 508

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
             GG + I S++   TT  CR+
Sbjct: 509 HMGGSLEIESAEGQGTT--CRV 528


>gi|268679228|ref|YP_003303659.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617259|gb|ACZ11624.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 1068

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 128/238 (53%), Gaps = 14/238 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E    EK  A  +A   K+ F+ ++S+E+R+PL  IIGFT+LLK S    L+ ++ ++V+
Sbjct: 372 ENIAKEKKNA-EEASAAKSIFLANMSHEIRTPLNGIIGFTELLKNS---DLDEEKREFVD 427

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  LL ++N+ILDL+ V++  ++++ S     D      +    K  E NI++ +
Sbjct: 428 VIEKSSENLLAIINNILDLSKVESNKIEIDESLFSPIDEFENAVEVYGPKAAEKNIQLSL 487

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVK 724
             D  L +++  D  ++ ++   ++SNA+ F+     + ++  R      D    +FSV+
Sbjct: 488 YMDPSLHNYLKGDSVKIKEVLINLMSNAVKFTPNNGQITVEIKRLENAPLDKAKVLFSVR 547

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           ++G  I ++  + +F+ F        R+  G GLGL+I   +I L GG + +  S+EG
Sbjct: 548 DSGIGINKEKIEGIFDAFNQADSTITRKFGGTGLGLTISSKYIALMGGKLDV-ESEEG 604


>gi|220909136|ref|YP_002484447.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
 gi|219865747|gb|ACL46086.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
          Length = 587

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 126/243 (51%), Gaps = 23/243 (9%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K+ F+  VS+ELR+PL  I+G++ LL   KL S  ++Q+  ++ I  ++ +   L+ 
Sbjct: 166 NRMKDEFIAVVSHELRTPLNAILGWSQLLIGGKLSSERTQQA--IQTIERNARMQAQLIG 223

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DIL++  +  G + L+  ++ LNDLL  + +S+        +R++   D  L  +V AD 
Sbjct: 224 DILEMTKLTQGKLHLSLQSLNLNDLLASLVESMQPLAEPKGLRLQSQLD-PLPRWVNADP 282

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILK------AARDN-------GDFI-FSVKNNGSSI 730
            RL QIF  +L+NA+ F+  G  + +K      AA  +         F+  S+ + G  I
Sbjct: 283 VRLRQIFWNLLTNAIKFTPAGGEIWVKLETGGTAALSSLTTDSIPASFVKISITDTGIGI 342

Query: 731 PEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
             +    VF+RF     +A R Q  G+GLGL+IV   + LH G + + S   G  TT   
Sbjct: 343 SPEFLPHVFDRFRQADGSATRAQ-GGLGLGLAIVRQLVELHQGRIEVFSQGRGQGTTFTL 401

Query: 787 RIP 789
            +P
Sbjct: 402 HLP 404


>gi|323487406|ref|ZP_08092703.1| hypothetical protein HMPREF9474_04454 [Clostridium symbiosum
           WAL-14163]
 gi|323399263|gb|EGA91664.1| hypothetical protein HMPREF9474_04454 [Clostridium symbiosum
           WAL-14163]
          Length = 450

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS---- 607
           RAL    + +RK    +N FV   S+ELRSPL  I      L++   G   N  Q+    
Sbjct: 198 RALQPARDGIRK----QNEFVAAASHELRSPLAVIRSSLSALESELPGETGNQNQTVTLR 253

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q ++        +  LV D+L LA+ DAG  +L+Y+    + LL E  ++      E NI
Sbjct: 254 QLIKNSDRECRRMARLVGDMLLLASSDAGNWELHYTQTEPDTLLIEAYEAFLPLCREKNI 313

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------- 718
            + + +        +ADRQRL Q+ + +L NA+ ++  G  V LK  +  G         
Sbjct: 314 NLILELPKEPFPPLLADRQRLEQVITILLDNAISYTPAGKEVRLKMYKKEGSRRISAGYF 373

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +  V + G  +P++M + +F+RF   +A R  ++  GLGLSI +    +HGG +++  
Sbjct: 374 RTVIEVADTGKGVPDEMKQRIFDRFYRGDASRKDKKHFGLGLSIAKELTEMHGGTLAVHD 433

Query: 777 SDEG 780
           +  G
Sbjct: 434 NPGG 437


>gi|313124625|ref|YP_004034884.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312281188|gb|ADQ61907.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 402

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 122/219 (55%), Gaps = 8/219 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNL 623
           ++ K+  + +VS+++R+PLT+IIG+  LLK    G++ S++   +Y+      +  + +L
Sbjct: 164 EQSKDELITNVSHDIRTPLTSIIGYLGLLKN---GAVTSQEDMLKYINIAYDKAEQMKSL 220

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            ND+ +  T+ +   KLN + I +  ++ +V      +  +  I   V +        AD
Sbjct: 221 ANDLFEYTTLKSTKTKLNVTPINIKGMMEQVAAGFELEAEKKGIAFSVKARPDDLIVNAD 280

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
            ++L+++++ ++SNA+ +++  S + L A   N + +   V+NNG  IP+D  K +F+RF
Sbjct: 281 VEKLVRVYNNLISNALKYAAGASRINLVANLINHEQVELRVENNGEPIPKDKLKKIFDRF 340

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             V ++   +  G GLGLSIV+  + LHGG +   S+ +
Sbjct: 341 YRVESSRNTKTGGTGLGLSIVQGAVELHGGTIRCESNKD 379


>gi|300857303|ref|YP_003782287.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300437418|gb|ADK17185.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 471

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 3/211 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           ++L K ++ +  F+ +VS+E+RSP+T+I GF   +    + +   KQ+ Y+    +    
Sbjct: 241 DSLEKVEKHRREFISNVSHEIRSPITSIKGFIGGMIDGVIPA--EKQNYYLSVTYSEIQR 298

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVND+LDL+ ++AG  KL    + +N+++        TK++   +++ V+ +     
Sbjct: 299 LTRLVNDLLDLSAIEAGEFKLRIEEVDINEIIRLCVIKFETKINNKKLKVDVLLEDNKLY 358

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD+ R+ Q+ + ++ NA+ +S  G  + +         + SV N+GS IPE   K ++
Sbjct: 359 VAADKDRITQVVTNLVDNAIKYSDIGGNIKVSTKVKGEKAVVSVYNDGSGIPESDLKHIW 418

Query: 740 NRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
           +RF   +  R  +   GLGLSIV S +   G
Sbjct: 419 DRFYKVDKSRTSKVSTGLGLSIVRSILTQLG 449


>gi|319764394|ref|YP_004128331.1| ATP-binding region atpase domain protein [Alicycliphilus
           denitrificans BC]
 gi|317118955|gb|ADV01444.1| ATP-binding region ATPase domain protein [Alicycliphilus
           denitrificans BC]
          Length = 585

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 17/234 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----Q 608
           R L       + A   K+ F+  +S+ELR+PLT+I GF +L++      L  +QS    Q
Sbjct: 331 RRLARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPLVREQSALIRQ 390

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENN 666
             E+++A       L+ +ILDLA V+AG M  +   + L  L++EV +   ++  +    
Sbjct: 391 GAEHLNA-------LLTEILDLAKVEAGSMPTHPEPVALPVLVHEVTELFRVSAVVKSLQ 443

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725
           +  +++ + +    V DR RL QI + +LSNA+ F+++G   + ++   D    +F V +
Sbjct: 444 LEARLLPEAE-QPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTD 502

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            G  I  ++ + +F +F     R   Q  G GLGLS+  +   L GG +++ SS
Sbjct: 503 TGPGIAPELQEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSS 556


>gi|254826317|ref|ZP_05231318.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|293595558|gb|EFG03319.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194]
          Length = 459

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L+K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L++   ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731
            D    ++  D + L Q++S +L+NA+ F+ +G  + +            V+++G  I  
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGK 398

Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           EDM K +F+RF  +N  R +  G  GLGLSI +  I LH G +++ SS E  TT   ++P
Sbjct: 399 EDMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLP 457


>gi|124006365|ref|ZP_01691199.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134]
 gi|123988022|gb|EAY27693.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134]
          Length = 2102

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 118/249 (47%), Gaps = 10/249 (4%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +T+ T  N+ +  R E  L     A   A + K+ F+  +S++LR+PL  I+G+  +LK 
Sbjct: 1606 RTIGTMTNIDERKRYEEDLQSAKAAAEAASQAKSVFLASMSHDLRTPLNGILGYAQILKK 1665

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             K  ++   Q   ++ I  S   LL L+NDIL L+ +++G ++L  +     D +  V  
Sbjct: 1666 EK--NITPPQRDGLQIIERSGEQLLLLINDILHLSKIESGKLELENNDFNFADFVKNVVS 1723

Query: 657  SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                     NI  +  S  +L  FV  D +R+ QI   +LSNA+ F+ +G          
Sbjct: 1724 ITRVWAENKNIDYRFESPAQLPYFVNGDEKRIRQILFNLLSNAIKFTDEGGVTFRITHTP 1783

Query: 716  ------NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768
                  N  F+F V++ G+ IP+D    +F  F      R Q  G GLGL+I    + L 
Sbjct: 1784 HPTKVLNHIFVFEVEDTGTGIPKDTIAKIFEPFHQVRGSRHQAEGTGLGLAICNRLVKLM 1843

Query: 769  GGHVSISSS 777
             G + + S+
Sbjct: 1844 DGSIQVEST 1852


>gi|33341112|gb|AAQ15122.1|AF350321_1 putative ethylene receptor ETR1 [Lactuca sativa]
          Length = 737

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 130/263 (49%), Gaps = 32/263 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ +  
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+ +T  L+ L  EV   I 
Sbjct: 373 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLELDTTTFNLHALFKEVLNLIR 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  + V D +RL+QI   I+ NA+ FS +GS  I         
Sbjct: 432 PVASVKRLFVTLSLSSDLPEYAVGDEKRLMQIILNIIGNAVKFSKEGSISISAIMAKPDS 491

Query: 710 LKAAR---------DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           L+  R         DN  F+   VK+ G  I +     +F +F  +     R   G GLG
Sbjct: 492 LRDPRAPDFFPLLSDNNFFLRVQVKDTGMGISQQDMPKLFTKFAESQSPATRNPGGSGLG 551

Query: 758 LSIVESFINLHGGHVSISSSDEG 780
           L+I + F+NL  G++ I S   G
Sbjct: 552 LAICKRFVNLMEGNIWIESEGLG 574


>gi|298493109|ref|YP_003723286.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298235027|gb|ADI66163.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1002

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 142/290 (48%), Gaps = 14/290 (4%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RKS +   + +    L + I  +  AQ M   + +     ++ AL +  E    A+  K+
Sbjct: 476 RKSFELWKQTVKHKSLPWQIFEIEVAQEMRNSLMLAALEFSQVALQQAAEQAEIANRAKS 535

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+PL  I+GFT +L  ++  SL+ +  + ++ IS S   LL+L+ND+L++
Sbjct: 536 QFLAKMSHELRTPLNAILGFTQIL--TRNSSLSQEDQENLDIISRSGEHLLSLINDVLEM 593

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG   LN +   L  L+  +++  A K  +  I +      ++  +V  D  +L Q
Sbjct: 594 SKIEAGKPTLNETYFDLYRLIYSIQEMFALKAADKGINLITEFGVEVNKYVFGDEGKLKQ 653

Query: 690 IFSKILSNAMDFSSKGSTVI--------LKAARDNGDFI--FSVKNNGSSIPEDMCKSVF 739
           I   ++ NA+ F+  G   I           A  NG  +    V++ G+ I  +  + +F
Sbjct: 654 ILINLIGNAIKFTVVGHVAIRVSCPPNYAPLAVTNGKVLIELEVEDTGAGIALEDQELIF 713

Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F+ S   R   +G GLGL+I   F  L GG +++ S     TT  CR+
Sbjct: 714 EAFLQSKGGRQFMQGTGLGLAISRQFARLMGGDITVKSILGEGTTFTCRV 763


>gi|222084676|ref|YP_002543205.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221722124|gb|ACM25280.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 767

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 16/249 (6%)

Query: 553 RALTEKNEALR-------KAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           R +TE+ +A R       KA+     K+  +  VS+E+R+PL+ I+G   LL  +    L
Sbjct: 229 RDVTEERQAARLREDARLKAEYNSAAKSRLLATVSHEIRTPLSGILGMNHLLAQT---PL 285

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q+ Y+  I  S   L+ LV D+LD +T++    +L     +L  LL  V + +A + 
Sbjct: 286 TLEQANYLTGIRQSGNALVQLVEDLLDFSTIEVNRFQLRPRAEMLRPLLEGVVEMLAHRA 345

Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           HE  I I       +   +  D  RL Q+   ++ NA+ F+  G  V+++A  D G+ + 
Sbjct: 346 HEKGIEIAATVAADVPETMEFDPARLRQVLFNVIGNAVKFTQTGG-VLIRAGLDGGNLLI 404

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           SV+++G  + E+    +F  F    +   +  G GLGL+I    +   GG +S++S    
Sbjct: 405 SVRDSGPGMTEEEQARIFGEFEQAGNVLDKSAGTGLGLAISARILREFGGALSVASERGN 464

Query: 781 VTTINCRIP 789
            +    R P
Sbjct: 465 GSEFTIRFP 473


>gi|146280448|ref|YP_001170601.1| two-component sensor [Pseudomonas stutzeri A1501]
 gi|145568653|gb|ABP77759.1| two-component sensor [Pseudomonas stutzeri A1501]
          Length = 968

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 4/234 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++K  F+  VS+ELR+PLT I G   +L     G L+ +    +     +S  L+ 
Sbjct: 456 RRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQLSDEARPLLTIAHKNSERLVR 515

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILD+  ++AG +  N     +  L+ +    I     +  + ++ +   +L S  A
Sbjct: 516 LINDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPELASSEA 575

Query: 683 --DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  R  Q+ + +LSNA+  S  G  V +   R        V++ G  IPE     +F 
Sbjct: 576 TLDPDRFAQVMANLLSNAIKHSPAGGRVTVDLRRSGERLEIGVQDRGPGIPEAFRSRIFE 635

Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF    ++   QR G GLGL+I  S +    G +      +  T    ++P +E
Sbjct: 636 RFAQADSSDARQRGGTGLGLAITRSLVQQMNGKIGFDCQPDQGTRFWLQLPLEE 689


>gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 764

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 11/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T +V  E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +LL  +   SL
Sbjct: 190 LDITSTVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDT---SL 246

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  Y   I  S   LL ++ND+LD + ++A  M L+     L   ++E+   +    
Sbjct: 247 SEEQKLYANTIKNSGEALLVIINDVLDYSKIEADKMVLHEEPFDLERAIHEIVMLLQPTA 306

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            +  + + V  D  L + FV DR R+ Q+ + +  NA+ F+++G   +      N D   
Sbjct: 307 RDKGLTMLVDYDLFLPTRFVGDRGRIRQVMTNLAGNAVKFTNEGHVTLRVTGISNPDEGT 366

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 +++ G  IP D    VF  F  V +    +  G GLGL+I +  I L  G + +
Sbjct: 367 CSVHCLIEDTGIGIPADKVDHVFGEFNQVEDERNRKFEGTGLGLAISKKLIELMDGEIWV 426

Query: 775 SSSDEGVTTINCRIP 789
            S +   +    RIP
Sbjct: 427 ESDEGEGSCFGFRIP 441


>gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  IIG   L   S+      +   Y+E I+ S+  LL L+NDIL
Sbjct: 414 KSEFLANMSHEIRTPMNAIIGLGQLALKSQPPP-PPRLHDYLEKITGSAATLLTLINDIL 472

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRL 687
           D + ++AG + ++     L+++LN++   +A +  E  + +    D G     V D  RL
Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRL 532

Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFV 743
            Q+   + SNA+ F+ +G  T+  + A    D +    +V++ G  +  +  + +F  F 
Sbjct: 533 GQVLINLTSNAIKFTQQGEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFT 592

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
                  R+  G GLGLSI    + L GG + + S+    +T +
Sbjct: 593 QADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFS 636


>gi|21109342|gb|AAM37873.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1225

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 12/226 (5%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616
            K E   +A   K  F+  + +E+R+P+T ++G ++LL KT++    +  Q  Y E I  +
Sbjct: 844  KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DPTQRSYTESIRRA 899

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL LVND LDLA +++G ++L++    +  L+ EV+  +A    E  +R   +  G 
Sbjct: 900  GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 958

Query: 677  LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733
            LG   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  +
Sbjct: 959  LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 1018

Query: 734  MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                +F RF   N  +   R  G GLGL+I +      GGH+ + S
Sbjct: 1019 QKARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1064


>gi|302386529|ref|YP_003822351.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302197157|gb|ADL04728.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 467

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 125/228 (54%), Gaps = 5/228 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +I+  F  + S+EL++P+T++ G+ +LL++  +     K   ++  I   +  + +L+ND
Sbjct: 240 QIRQEFFSNASHELKTPITSVQGYAELLESGIIQDEEQKMD-FIRRIKKEAVNMNHLIND 298

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           IL ++ ++A   ++  + + L+ LL+++ +S+      + + I V  D K     A+ Q+
Sbjct: 299 ILMISRLEAKEAEVLKNDVRLSILLDDIVESLKPLAASHEVMIHV--DCKPLCIYANGQQ 356

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           + ++F  ++SNA+ ++  G  V +    +N + I  VK+NG  IP++    +F RF  V 
Sbjct: 357 MKELFGNLISNAIKYNKPGGQVWVTVTEENRNVIIRVKDNGMGIPKESLGRIFERFYRVD 416

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                ++ G GLGLSIV+  +N + G +++ S  +  T    +IP +E
Sbjct: 417 KGRSKKQGGTGLGLSIVKHIVNFYHGTITVRSELDVGTEFVVKIPIQE 464


>gi|294645464|ref|ZP_06723165.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292639165|gb|EFF57482.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 911

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592
           +L FV      RA+  +  + E +   K +EI   K  F  ++S+ELR+PL+ I+    +
Sbjct: 348 LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 407

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  S L     +Q   ++Y+  +   LL++VN +LD    +AG M ++ + + + +LL 
Sbjct: 408 LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 465

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +          +  I   + SD +   F ADR  +  I   +LSNA  F+  G ++ L  
Sbjct: 466 DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 525

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             +   + F+V+++G  +  +    +F RF      GQR+G G+GLS+V+  +  H G +
Sbjct: 526 WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 583

Query: 773 SISSSDEGVTTINCRIPS 790
           +++S     T     +P+
Sbjct: 584 TVASEPAQYTEFKVTLPA 601


>gi|218507628|ref|ZP_03505506.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli Brasil 5]
          Length = 404

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 10/247 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591
           A   L   +V   V  ER L +  E  R+  E     K+  +  VS+E+R+PL+ I+G T
Sbjct: 162 ADGRLLLHSVARDVTEERLLAQGREQARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMT 221

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  ++L     +Q  Y+  I  S   L  LV D+LD +T++ G  +L+  +  L  LL
Sbjct: 222 HLLAETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFELHPRSESLRKLL 278

Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V + +A + HE  I I   +S     +   D  RL Q+   ++ NA+ F+  G  V +
Sbjct: 279 ESVVEMLAHRAHEKGIEIGATVSSDVPQNMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 337

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
           + + D G+ + +V ++G  +  +    VF  F        +  G GLGL+I    +   G
Sbjct: 338 RVSLDAGNLLITVADSGPGMTAEEQARVFGEFEQGGTVADKSAGTGLGLAISARIMREFG 397

Query: 770 GHVSISS 776
           G ++++S
Sbjct: 398 GALTVAS 404


>gi|170698659|ref|ZP_02889726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170136438|gb|EDT04699.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 663

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 9/244 (3%)

Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R L    +A  +ADE   +K+  +  VS+ELR+PL  I G+ ++L++   G       Q 
Sbjct: 267 RTLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRS---GEGQGFAHQA 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L  +V D+LD +++  G M+L  + + L  ++ E  + +      N + +
Sbjct: 324 IDAIDRSARSLSRMVGDLLDASSLATGRMRLERTPVDLVRIVQEAVRELGETAEANGLEL 383

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                       AD  RL Q+ + +LSNA+ F+  G  + +           SV + G  
Sbjct: 384 STECAMPSCVIAADADRLRQLLANLLSNAVKFTPPGGRIKVSLNPAGARVRLSVADTGQG 443

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
           I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V+ +S   G  TT+  
Sbjct: 444 ISAERLPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTV 503

Query: 787 RIPS 790
            +P+
Sbjct: 504 MLPA 507


>gi|171320663|ref|ZP_02909680.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171094093|gb|EDT39184.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 662

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 9/244 (3%)

Query: 553 RALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R L    +A  +ADE   +K+  +  VS+ELR+PL  I G+  +L++   G       Q 
Sbjct: 266 RTLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVGVLRS---GEGQGFAHQA 322

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L  +V D+LD +++  G ++L  + + L  ++ E  + +      N + +
Sbjct: 323 IDAIDRSARSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQEAVRELGETPEANGLEL 382

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                       AD +RL Q+ S +LSNA+ F+  G  V +           SV + G  
Sbjct: 383 STECAMPSCVIAADAERLRQLLSNLLSNAIKFTPPGGRVKVSLNPAGARVRLSVADTGQG 442

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
           I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V+ +S   G  TT+  
Sbjct: 443 ISAERLPHLFDTFSRPEGAAALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTV 502

Query: 787 RIPS 790
            +P+
Sbjct: 503 MLPA 506


>gi|146281817|ref|YP_001171970.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri
           A1501]
 gi|145570022|gb|ABP79128.1| probable sensor/response regulator hybrid protein [Pseudomonas
           stutzeri A1501]
          Length = 914

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 18/246 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERA +E        +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q  Y+
Sbjct: 399 AERAASE--------NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL---DRSQQFYL 447

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + IS+S   L+ ++NDILD A + +G + L      L  L++E  +    +  E  + + 
Sbjct: 448 DTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLH 507

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           V +  G       D  RL QI   +LSNA+ F+  G  V+  + R   D     +F V +
Sbjct: 508 VGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVVLEVSCRRTQDGEPRLVFCVSD 567

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  + +++   +F  F        RR  G GLGL+I +  + +  GH+ + S+    + 
Sbjct: 568 SGIGMRQEVLAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSTPGRGSR 627

Query: 784 INCRIP 789
               IP
Sbjct: 628 FCFEIP 633


>gi|84496579|ref|ZP_00995433.1| two-component sensor protein [Janibacter sp. HTCC2649]
 gi|84383347|gb|EAP99228.1| two-component sensor protein [Janibacter sp. HTCC2649]
          Length = 272

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 10/233 (4%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           ALR+AD++       +S+E+R+PL  I G  DLL     G L + Q+++V+ IS S+  +
Sbjct: 44  ALRRADQVSV-----LSHEVRTPLALIKGSADLLAEETPGPLTTTQAKFVDTISGSAEHV 98

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + L  D+L  A ++AG+ +++   + L   L  V + +    H   I +   + G     
Sbjct: 99  IALAEDLLAHARIEAGLFEVHLRQVELRAYLRTVVRELRQVHHHRAIALD--APGPPTRV 156

Query: 681 VADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             D Q + Q+ S ++ NA+    S  + V+++    +G+ I ++ + G  + E     +F
Sbjct: 157 YLDPQLIHQLVSNLVGNALRHDDSPANAVVVRGLTADGNVIIAISDQGRGMSEAERSRLF 216

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF S+A  G+  G GLGL I      LHGG + + +  +  TT+    P+ E
Sbjct: 217 ARFSSSAPVGE--GTGLGLYISSHIAELHGGRILVDTIAQHGTTMLVTFPAGE 267


>gi|182413985|ref|YP_001819051.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
            PB90-1]
 gi|177841199|gb|ACB75451.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
            PB90-1]
          Length = 1204

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 14/228 (6%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+P+  +IG ++LL  + LG    +Q +Y + I  S+  LL ++NDILD++
Sbjct: 824  FLANMSHEIRTPMNGVIGMSNLLVDTPLG---PEQQEYAQAIRHSAEALLAIINDILDVS 880

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
             ++AG ++L  +   L+ L+ +    +        +R+K  +S     + + D  R+ Q+
Sbjct: 881  KLEAGKLQLVPTEFRLDQLVEDAVSLLRPSATAKGLRLKAELSPELPPTLLGDANRVRQV 940

Query: 691  FSKILSNAMDFSSKGSTVILKA------ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF 742
               ++ NA+ F+  G   +  A      A D+G       V + G  +P +  + +F  F
Sbjct: 941  LLNLIGNAVKFTEHGGVFVRVAPEPGATAHDSGPVSVRIEVADTGIGVPPEAAERLFQPF 1000

Query: 743  VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                    RR  G GLGL+I    + L GG + + S + G +   C I
Sbjct: 1001 TQADESMTRRYGGTGLGLAISRQLVELMGGQIGVRSPETGGSVFWCVI 1048


>gi|157374424|ref|YP_001473024.1| hybrid sensory histidine kinase BarA [Shewanella sediminis HAW-EB3]
 gi|157316798|gb|ABV35896.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 937

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 14/234 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L+S Q  Y+  I  S
Sbjct: 292 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYINTIEKS 346

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L ++L++    ++    E +I + V I   
Sbjct: 347 ATTLLGIINDILDFSKLEAGKMVLENMPFALREMLDDTITLLSNSAREKDIELVVDIESD 406

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF---SVKNNGSSIP 731
                  D  R+ QI + ++ NA+ F+ +GS  + L+    N + +     V + G  I 
Sbjct: 407 VPEDLSGDAMRISQIMTNLVGNAIKFTDQGSVHLKLQLTESNNEQVHLRCEVTDTGIGID 466

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
           +   + +F  F        RR  G GLGL I +  +N  GG +  IS  D+G T
Sbjct: 467 DSQKEVLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCISKLDKGST 520


>gi|89076676|ref|ZP_01162968.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34]
 gi|89047657|gb|EAR53262.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34]
          Length = 701

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 128/240 (53%), Gaps = 9/240 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T   R    L E  +    A++ K+ F+  +S+E+R+PL  ++G   L+++  L 
Sbjct: 302 TAKDITSRKRRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLG---LMESLSLS 358

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN+KQ+ ++  +  S+ +LL ++NDILDL+ +++G  +L  S I + + +  V   +A 
Sbjct: 359 GLNNKQNLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAP 418

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +  +NN++ +  I D        D+ R+ Q+   ++ NA+ F+S GS  V+ +   DN +
Sbjct: 419 QATKNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGSVRVVARKVDDNIE 478

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V + G  I +D   ++FN F        RR  G GLGL+I +  I    G +S+ S
Sbjct: 479 --IAVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMDGTISLES 536


>gi|229591552|ref|YP_002873671.1| two-component system sensor kinase [Pseudomonas fluorescens SBW25]
 gi|229363418|emb|CAY50597.1| two-component system sensor kinase [Pseudomonas fluorescens SBW25]
          Length = 461

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 20/239 (8%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEY 612
           E+NE +R+       F+  VS+ELR+PL+ + G      D ++T   GS+ S Q +    
Sbjct: 234 ERNEQMRR------EFMADVSHELRTPLSVLRGELEAIEDGVRTLDQGSMKSLQGEV--- 284

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
                ++L  LV+D+ DL+  D G +    S   L  LL         +M+  ++RI++ 
Sbjct: 285 -----SMLSKLVDDLYDLSLADVGALTYRKSACALEPLLRASVSMFEERMNARHLRIELD 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                   +AD  RL Q+FS +L NA+ ++     V ++A  D  D    + ++G  +  
Sbjct: 340 LPAPPVELLADAGRLQQLFSNLLENAVRYTDPNGLVRIRAVLDRADVCIDILDSGPGVST 399

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F RF        R   G GLGL+I  S    HGG +S + S  G   ++ R+P
Sbjct: 400 EQLPRLFERFYRGESSRNRASGGAGLGLAICHSIALAHGGSLSAAHSPLGGLWLSLRLP 458


>gi|228908985|ref|ZP_04072815.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL
           200]
 gi|228953539|ref|ZP_04115582.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229080447|ref|ZP_04212968.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2]
 gi|228702749|gb|EEL55214.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2]
 gi|228806123|gb|EEM52699.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228850707|gb|EEM95531.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL
           200]
          Length = 448

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++  + D  + 
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDITIK 337

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +
Sbjct: 338 ---GDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRI 394

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 395 FDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447


>gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
            autotrophicum HRM2]
 gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
            autotrophicum HRM2]
          Length = 1316

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 28/250 (11%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+  K  F+ ++S+E+R+P+  IIG T LL  ++L     +Q +Y   + AS   LL ++
Sbjct: 784  ANLAKGEFLANMSHEIRTPMNGIIGMTGLLMDTQL---TDEQRRYARIVQASGESLLRII 840

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVA 682
            N+ILD + ++AG + L      L D  + +   +A + HE  I     +  D  LG    
Sbjct: 841  NEILDFSKIEAGKLDLETIDFNLQDFCDYLTPPLAMQAHEQGIEFICTLDPDVPLG-LRG 899

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
            D  RL QI + +  NA+ F+S G   I        D      FSVK+ G  I  +    +
Sbjct: 900  DSGRLGQILTNLAGNAVKFTSTGKVSIKVKVEHETDKDVILYFSVKDTGIGIQREKLGMI 959

Query: 739  FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS----------------SDEG 780
            FN+F        R   G GLGL+I +    + GG + + S                 D+G
Sbjct: 960  FNKFTQADESTTREFGGTGLGLAISKQLTEMMGGRMGVESIQGEGSNFWFTVHMEKQDQG 1019

Query: 781  VTTINCRIPS 790
                NC  P 
Sbjct: 1020 KGKENCPSPG 1029


>gi|90407447|ref|ZP_01215631.1| sensor histidine kinase FexB [Psychromonas sp. CNPT3]
 gi|90311478|gb|EAS39579.1| sensor histidine kinase FexB [Psychromonas sp. CNPT3]
          Length = 751

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 11/245 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L   +   LN++Q ++
Sbjct: 238 RDITERKIHQESLEKASRDKTTFIATISHELRTPLNGIVGLSRMLLDEQ---LNAEQHKH 294

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+DL  +D   + L    I + D + +++     +  +  + +
Sbjct: 295 LKTIHMSAITLGNIFNDIVDLDKLDRRRLNLVCDQIDMFDFVGDLESLAFIQTEQKGLVL 354

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVK 724
               +G L  ++ AD  RL Q+   ++SNA+ F+  G  T+   A R N       F V+
Sbjct: 355 NFEQEGMLPDYIEADDTRLRQVLWNLISNAVKFTKTGHITIRCFAKRQNAQHATLCFEVE 414

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           ++G  IP      +F+ +          G G+GL++ +  ++  GG +S+ S+    +T 
Sbjct: 415 DSGIGIPAQQLDKIFSMYYQVQGDQHATGTGIGLAVSQQIVDAMGGKLSVKSTFGKGSTF 474

Query: 785 NCRIP 789
              +P
Sbjct: 475 TLSLP 479


>gi|186685045|ref|YP_001868241.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467497|gb|ACC83298.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 449

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 128/257 (49%), Gaps = 16/257 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++++S R +  L    EA+R+A        E+K+  +   S+E R+PLT I    +LL+ 
Sbjct: 191 DISESKRLQAKLQWAEEAMRQALAKEREFSELKSRLLTTASHEFRNPLTTIHSSAELLEH 250

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLN 652
            +    + +Q  ++  I  S   +  L+ND+L L   + G ++ N + + L     DLL 
Sbjct: 251 YRHLWSDERQQIHLRRIQTSVMHITQLLNDLLVLNQDETGKLEFNPTPLNLVEFCRDLLE 310

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E++QS  ++       I   S+ +  S   D + L QI + + SN + +S  GSTV    
Sbjct: 311 ELEQSDRSQH-----AIVFSSECQCPSANLDAKLLRQILTNLFSNCLKYSPIGSTVKFSV 365

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              N   IF  +++G  IP    + +F  F   ++ G   G+GLG+SIV+  ++LHGG +
Sbjct: 366 TTANERAIFQTQDSGIGIPPADIEHIFEPFHRASNTGNIPGMGLGMSIVKQGVDLHGGEI 425

Query: 773 SISSSDEGVTTINCRIP 789
            + S+ +  TT    +P
Sbjct: 426 IVESAIDAGTTFTVILP 442


>gi|317052639|ref|YP_004113755.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947723|gb|ADU67199.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 970

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 8/219 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ + +K+ FV  VS+ELR+PLT+I G   L+    +G L S+  Q V+    +S  L  
Sbjct: 481 KRVELMKSQFVSTVSHELRTPLTSINGSLGLIAGGAVGELPSQARQLVDIAYKNSQRLGY 540

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK---MHENNIRIKVISDGKLGS 679
           L+ND+LD+  + AG M+ +   ++L +L+  V+Q++        + N+   ++       
Sbjct: 541 LINDLLDMEKIAAGKMRFD---MILQELMPIVEQAMEANEAYGRQFNVTFALVERDDSML 597

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D QRL+Q+ S +LSNA  FS+    V +     N      V++ G  I  ++   +F
Sbjct: 598 VRVDAQRLMQVLSNLLSNAAKFSASAERVEIAVMAQNNQVRVEVRDQGPGISPELQARLF 657

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F    ++   Q+ G GLGL+I +  +   GG + + S
Sbjct: 658 TKFTQADSSDTRQKGGTGLGLAIAKELVERMGGTIGVHS 696


>gi|118443927|ref|YP_878728.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134383|gb|ABK61427.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 1666

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 131/244 (53%), Gaps = 12/244 (4%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYIS 614
            NE++ K +E++  F  ++S+ELR+PL  I         LL+   L +   K  +Y+  + 
Sbjct: 1398 NESI-KYEEMRTEFFANISHELRTPLNVIFSGYQMLNVLLENEDLEN-KEKVDKYMGTVK 1455

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +   L+ L+N+++D+  +D+G  KLN   + + +++  +  S+A  +    I +   + 
Sbjct: 1456 QNCYRLVRLINNLIDITKIDSGFFKLNMINVNIVNIVETITLSVAQYIESKGINLIFDTF 1515

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +  +   D  ++ +I   +LSNA+ F++KG  + +    ++ + + SVK++G  IP++ 
Sbjct: 1516 IEEKTMACDVDKIERIILNLLSNAVKFTNKGGNIFVTMKEEDNNIVISVKDDGIGIPKEK 1575

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS----DEGVTTINCRI 788
               +F+RF  V  +    R G G+GL++V+S + LH G++++ S      E +  + C++
Sbjct: 1576 QSIIFDRFIQVDKSLSRNREGSGIGLALVKSIVELHDGNITLKSKLGRGSEFIIKLPCKV 1635

Query: 789  PSKE 792
              K+
Sbjct: 1636 LEKQ 1639


>gi|77748688|ref|NP_643337.2| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1194

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 12/226 (5%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616
            K E   +A   K  F+  + +E+R+P+T ++G ++LL KT++    +  Q  Y E I  +
Sbjct: 813  KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DPTQRSYTESIRRA 868

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL LVND LDLA +++G ++L++    +  L+ EV+  +A    E  +R   +  G 
Sbjct: 869  GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 927

Query: 677  LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733
            LG   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  +
Sbjct: 928  LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 987

Query: 734  MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                +F RF   N  +   R  G GLGL+I +      GGH+ + S
Sbjct: 988  QKARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1033


>gi|194432448|ref|ZP_03064735.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012]
 gi|194419335|gb|EDX35417.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012]
 gi|332095919|gb|EGJ00926.1| TMAO reductase sytem sensor TorS [Shigella dysenteriae 155-74]
          Length = 904

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++  + IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGHPIRLATAIADDVPSAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|327478665|gb|AEA81975.1| two-component sensor [Pseudomonas stutzeri DSM 4166]
          Length = 958

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 4/234 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +++K  F+  VS+ELR+PLT I G   +L     G L+ +    +     +S  L+ 
Sbjct: 446 RRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQLSDEARPLLTIAHKNSERLVR 505

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILD+  ++AG +  N     +  L+ +    I     +  + ++ +   +L S  A
Sbjct: 506 LINDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPELASSEA 565

Query: 683 --DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  R  Q+ + +LSNA+  S  G  V +   R        V++ G  IPE     +F 
Sbjct: 566 TLDPDRFAQVMANLLSNAIKHSPAGGRVTVDLRRSGERLEIGVQDRGPGIPEAFRSRIFE 625

Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF    ++   QR G GLGL+I  S +    G +      +  T    ++P +E
Sbjct: 626 RFAQADSSDARQRGGTGLGLAITRSLVQQMNGKIGFDCQPDQGTRFWLQLPLEE 679


>gi|301301239|ref|ZP_07207394.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851115|gb|EFK78844.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 487

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 128/243 (52%), Gaps = 7/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E NE +++ +E +  F    ++E+R+PLT I G  + L    +   + ++S  +E 
Sbjct: 249 QSLRESNEEIKRQEERRRQFFADAAHEMRTPLTTINGLLEGLAYDAIPEESKEKS--IEL 306

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L+ LVN+ LD   + +G ++L+ +   +  +LN + + +  K  +   + +V 
Sbjct: 307 MRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQLRNKAEQVGDKFEVY 366

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  KL  + AD  RL+QI   I  NA+ F+  G  + + A + N + I  + +NG  + E
Sbjct: 367 TPDKLMVY-ADYDRLVQIIFNITQNAIQFTENG-VISISAEKGNEETIIRISDNGIGMNE 424

Query: 733 DMCKSVFNRF--VSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  ++++ R+     + +  + G  GLGLSIV   + LH G V++ S +   TT   R P
Sbjct: 425 EQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTVESKEGKGTTFTLRFP 484

Query: 790 SKE 792
           +K+
Sbjct: 485 NKK 487


>gi|298251062|ref|ZP_06974866.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297549066|gb|EFH82933.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1095

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 15/237 (6%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N A ++ ++ K++F+   S+ELR+PLT +      ++TS L     KQ      +S+  T
Sbjct: 867  NSARQELEQRKDAFISMASHELRNPLTAL-----KMQTSLLHRQLVKQGLQAPALSSMQT 921

Query: 619  IL---LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             +     LV D+LD++ + AG ++     + L+ LL E    IA  M   +    ++  G
Sbjct: 922  QINKITRLVEDLLDVSKIQAGRLEYQQEIVDLDALLRE----IADTMLHTHPSHTILLHG 977

Query: 676  KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +G S + DR RL Q+F+ +LSNA+ +S    TV ++ +         V+++G  IP + 
Sbjct: 978  TVGTSLMGDRDRLGQVFTNLLSNAIKYSPGAETVEMELSASEEAVTILVRDHGLGIPREQ 1037

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F+RF  V++  +    G+G+GL IV   +  HGG + + S     +T    +P
Sbjct: 1038 RDKIFDRFYRVTDPKQKAIPGLGMGLYIVAEIVKHHGGTIMVESEMGKGSTFQVTLP 1094


>gi|225570046|ref|ZP_03779071.1| hypothetical protein CLOHYLEM_06142 [Clostridium hylemonae DSM
           15053]
 gi|225161516|gb|EEG74135.1| hypothetical protein CLOHYLEM_06142 [Clostridium hylemonae DSM
           15053]
          Length = 509

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 114/215 (53%), Gaps = 3/215 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +++ +K   + +VS++L++PLT++IG+ DLLK  +L   + +   YV+ ++     
Sbjct: 282 EKQMQSERMKIDLITNVSHDLKTPLTSMIGYIDLLKKERL---SDEARDYVDVLALKQEQ 338

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L N++ DI DL+   +G + L    + +  LL +    +   + ++ + I+   DG   +
Sbjct: 339 LKNMIQDIFDLSKSTSGEVNLELEELDMKKLLEQTLGDMEDAVAKSGMVIREKVDGADLN 398

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            V D ++L ++   I+SNA+ +S KG+ + ++A R++     SVKN  S   +   + + 
Sbjct: 399 IVGDGKKLYRVLQNIISNALKYSLKGTRIYIEAGREDSQIYVSVKNTASYEMDFSPEEIM 458

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            RF          G GLGL+I ESF    GG +++
Sbjct: 459 ERFSRGDKSRNTEGHGLGLAIAESFTKNMGGTMTV 493


>gi|77919545|ref|YP_357360.1| two component hybrid histidine kinase/sensor response regulator
           [Pelobacter carbinolicus DSM 2380]
 gi|77545628|gb|ABA89190.1| two component hybrid histidine kinase/sensor response regulator
           [Pelobacter carbinolicus DSM 2380]
          Length = 833

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 12/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +A   A+  K+ F+ ++S+E+R+P+  +IG  +LL  +    L+  Q +    I 
Sbjct: 286 LAQARQAAETANHAKSRFLANMSHEIRTPMIGVIGVAELLSGTP---LSDHQRELAHMIH 342

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVIS 673
           +S   LL ++NDILD + ++AG + +      L D++ E    IA    +  +  I  I 
Sbjct: 343 SSGESLLKVLNDILDFSKIEAGRLVVERVPFNLVDVVEEPLSLIAKNAQDKKVELICRIQ 402

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSS 729
            G   S + D  RL QI   +L NA+ F+S+G   +    RD    +      V++ G  
Sbjct: 403 PGTPVSLLGDPARLRQIVFNLLGNAVKFTSEGEISVRIGCRDENCASASIFLEVRDTGIG 462

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           I  +  +++F+ F S A     R   G GLGL+IV   ++L  GH+ + S     +   C
Sbjct: 463 IDREAQQAIFDAF-SQADSSTTRHYGGTGLGLAIVRQLLDLMRGHIHLESELGQGSVFTC 521

Query: 787 RI 788
            I
Sbjct: 522 TI 523


>gi|58616936|ref|YP_196135.1| putative sensor protein [Ehrlichia ruminantium str. Gardel]
 gi|58416548|emb|CAI27661.1| Putative sensor protein [Ehrlichia ruminantium str. Gardel]
          Length = 477

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 128/245 (52%), Gaps = 9/245 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613
           L E  E   + +  K+ F+ +VS+ELR+PL +IIGF++++K+  LG + NS   +Y+  I
Sbjct: 228 LKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPIENSDYKEYINDI 287

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
            +S   LL+L+NDILD +  +A  + + +    L  +++     +  +  +  + + KV+
Sbjct: 288 HSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPRAEQAKVHLEKVL 347

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSI 730
              K+   VAD +R+ Q+   +LSN+M F+ +  TV  +++   ++   I  + + G  I
Sbjct: 348 PSDKV-VMVADPKRIKQVIINLLSNSMKFTPENGTVKLVVRYNLEDKLIIIEITDTGIGI 406

Query: 731 P-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +D+ K  SVF + V + H  +  G GLGL + +  + L  G   I S     T I   
Sbjct: 407 AQQDLYKVMSVFGQ-VDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSEPNSGTVITLT 465

Query: 788 IPSKE 792
            P  E
Sbjct: 466 FPYTE 470


>gi|206969170|ref|ZP_03230125.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206736211|gb|EDZ53369.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 458

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 457


>gi|117925659|ref|YP_866276.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609415|gb|ABK44870.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 899

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 16/231 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T +++AL     +K+ F+  +S+E+ +P+  ++G  +LL      +L+ +Q +YVE    
Sbjct: 267 TARDQALESV-RLKSEFLATMSHEISTPMNGVVGMLELLDEK---TLSPQQQEYVEIAKH 322

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL--LNEVKQSIATKMHENNIRIKVIS 673
           S+  LL ++NDILD + V+AG + L   +I    L  + EV   +A +  +  + +   +
Sbjct: 323 SAEALLAIINDILDFSKVEAGHLVLE--SIPFQPLMEMEEVVALLAPRAQDKGVALVTEA 380

Query: 674 DGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI-FSVKNNG 727
             ++  G  V D  R  Q+ + ++ NA+ F+ +G  V+    +A +     + FSVK+ G
Sbjct: 381 QWQVLPGQVVGDPLRFRQVLTNLIGNAIKFTQQGEVVVALGWQAGQGTAGVLHFSVKDTG 440

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I  D  K +F  F        RR  G GLGL+I    I L GG + + S
Sbjct: 441 VGIDADTQKKLFQVFTQADGSTTRRFGGSGLGLAISRQLIELQGGQIGVES 491


>gi|239995910|ref|ZP_04716434.1| histidine kinase response regulator hybrid protein [Alteromonas
           macleodii ATCC 27126]
          Length = 542

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 123/249 (49%), Gaps = 4/249 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSL 602
           ++ SV A   L  KN  L +  + K+ F+ +VS+E+R+PL  I  F+ LL+    KL +L
Sbjct: 150 LSKSVVAHLELKRKNRELERTSQFKSDFLSYVSHEIRTPLNAINTFSQLLEGEAQKL-NL 208

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            S  +  + ++S S   LL +VN +LD+  ++AG M++    +   D    +      + 
Sbjct: 209 PSSFTTPLSHVSQSGERLLEIVNSVLDIKQIEAGKMRVMPRAVNTKDFFTHLFSLTKIRA 268

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            ++ I     I D    S   D  +  Q+   +LSNA+ F++ G +V  +    NG  IF
Sbjct: 269 EDSGIVFSTSIDDAVPDSLFFDDTKFGQVALNLLSNAIKFTNHGKSVKAQVKYKNGKVIF 328

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +V + G  + +D  K +F  F    +  Q  G GLGL+I +  + L  G + +SS     
Sbjct: 329 NVIDQGIGMSDDDQKRLFTPFERMENARQISGTGLGLNISKRLVELMDGSIKVSSKLNHG 388

Query: 782 TTINCRIPS 790
           T I+  +P+
Sbjct: 389 TRISVTLPA 397


>gi|229070714|ref|ZP_04203944.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185]
 gi|228712384|gb|EEL64329.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185]
          Length = 448

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++  + D  + 
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDITIK 337

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +
Sbjct: 338 ---GDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRI 394

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 395 FDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447


>gi|229075210|ref|ZP_04208204.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18]
 gi|228707987|gb|EEL60166.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18]
          Length = 448

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDITVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELP 447


>gi|303258394|ref|ZP_07344397.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47]
 gi|302858840|gb|EFL81928.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47]
          Length = 863

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 158/336 (47%), Gaps = 33/336 (9%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDS-VLEYS 529
             P     N     +R+Y+E   W      + +  ++R   K+    +EL   S   + S
Sbjct: 252 FDPDAITNNKEELLNRFYDEDRNW------LRNILNDRTIIKTATRNIELKGSSQTFQLS 305

Query: 530 IIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           + P+       T+++  + T+ +  +R L +     + A + K+ F+ H+S+E+R+P+  
Sbjct: 306 VYPVRQGLIDWTVVSLFDETEQIAYQRNLADALTTAKNASQAKSDFLSHMSHEIRTPMNA 365

Query: 587 IIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           IIG T    T  L  ++ KQ     ++    +S  LL L+NDILD++ +++  + L+Y  
Sbjct: 366 IIGMT----TIALSRISDKQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYEK 421

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             L + ++ +   I  +  E  +  ++++ D      V D+ R+ Q+F  +++NA+ F+ 
Sbjct: 422 FDLQETVHSIYNLIEPQAKEKGVSFEIVTNDVNQECLVGDQLRVNQVFINVIANAVKFTP 481

Query: 704 KGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-----HRGQRRG 753
           +G  V +K      + ++      + +NG  + +D    VF  F         H G   G
Sbjct: 482 RGGKVTMKLSEKQTSPEHIHLRCIISDNGIGMKKDFLSRVFLPFEQETAEIAQHFG---G 538

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I  + +NL GG++ + S +   +T    +P
Sbjct: 539 TGLGLAITHNLVNLMGGNIDVQSEEGKGSTFTIDLP 574


>gi|294672858|ref|YP_003573474.1| sensory box histidine kinase [Prevotella ruminicola 23]
 gi|294473160|gb|ADE82549.1| sensory box histidine kinase [Prevotella ruminicola 23]
          Length = 914

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 134/251 (53%), Gaps = 12/251 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+   + A++ L ++ +   ++ ++K +F+ ++++E+R+PL  I+GF+DLL   +    +
Sbjct: 673 NINTLMEAQQKLKDETQRAEESGKMKAAFLANMTHEIRTPLNAIVGFSDLLPVVE---EH 729

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S++ +++  I  +  +L+ L+NDIL+ + V    + +    +    + +++ Q++A ++ 
Sbjct: 730 SERMEFIRIIRNNCDMLMRLINDILEASNVGQA-LAIQPEQVDFAKVFDDICQTLAQRVD 788

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           E  +    I D    +F A  D+ R+ Q+ +   +NA+ ++ +G   +    +D G + F
Sbjct: 789 EAGVLF--IKDNPYETFPATLDKGRIQQVLTNFTTNAIKYTHEGHIKVGYREQDGGIY-F 845

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG- 780
             ++ G+ IP+D   +VF RFV      Q  G GLGLSI ++      G + + S  EG 
Sbjct: 846 YCEDTGAGIPKDKQAAVFERFVKLNDFVQ--GTGLGLSICKAIAERCEGKIGVESEGEGH 903

Query: 781 VTTINCRIPSK 791
            +T    IP K
Sbjct: 904 GSTFWMWIPRK 914


>gi|124007263|ref|ZP_01691971.1| PAS [Microscilla marina ATCC 23134]
 gi|123987293|gb|EAY27022.1| PAS [Microscilla marina ATCC 23134]
          Length = 1386

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 11/213 (5%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+PL  +IGF DLL  +   SLN  Q +Y++ +  S+  LL+++ DILD +
Sbjct: 886  FLANMSHEIRTPLNGVIGFVDLLLET---SLNESQKEYLKTVHQSAHTLLDIITDILDFS 942

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
             ++AG M+++ +   L  L+N+V   +   +++  + + +     L  F+ AD  R  QI
Sbjct: 943  KIEAGKMEISITQTDLMHLINQVVSVVKYTVYQKKLELLLDLSDDLPQFIYADDVRFKQI 1002

Query: 691  FSKILSNAMDFSSKGSTV----ILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             + ++SNA+ F+  G  V    +LK   DN   F FSVK+ G  I  +    V   F   
Sbjct: 1003 LTNLMSNAVKFTEAGEVVLKVELLKQLPDNEAIFRFSVKDTGVGIAPEKQSKVLEAFSQE 1062

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                 R+  G GLGL+I    + L    + + S
Sbjct: 1063 DASTTRKFGGTGLGLTITNKLLKLMESRLKLKS 1095


>gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1622

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 10/243 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T V++TD  RAER L    E   +   +K++F+ ++S+E+R+P+  IIG + L   S   
Sbjct: 845  TLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKS--- 901

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             L  +Q+ YV  I  +   LL ++NDILD + ++AG + +     +L+ +L  +   +  
Sbjct: 902  GLTPRQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGY 961

Query: 661  KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
            K     + + + ++       V D  RL QI     +NA+ F+ +G   V ++    +G 
Sbjct: 962  KAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVRVVERHGR 1021

Query: 719  FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +   F V++ G  +  +    +F  F        RR  G GLGL+I ++   L GG V 
Sbjct: 1022 RVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVG 1081

Query: 774  ISS 776
              S
Sbjct: 1082 AES 1084


>gi|89902313|ref|YP_524784.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89347050|gb|ABD71253.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 1007

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 552 ERALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +RAL +KN       +A  KA+  K+ F+  +S+ELRSPL  I+GF  L++ S +    +
Sbjct: 599 DRALRDKNVELESARQAADKANLAKSEFLSSMSHELRSPLNAILGFAQLME-SGVPPPTA 657

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q   ++ I      LL L+N+ILDLA +++G + L+   I L D+L + +  I  +  +
Sbjct: 658 TQKASIDQILHGGWYLLELINEILDLALIESGKLSLSMEPIALPDVLLDCQAMIEPQAQK 717

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723
           ++IRI            ADR R+ Q+   ++SNA+ ++  G TV +   +     +  SV
Sbjct: 718 SDIRISFPQFNAPCFVNADRTRVKQVIVNLMSNAIKYNRVGGTVEVTCKKVAAQRLRISV 777

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISS 776
           +++G  +  +    +F  F       G   G G+GL + +  + L GG +   S
Sbjct: 778 RDSGEGLSAEKVTQLFQPFNRLGQEVGSEEGTGIGLVVSKRLVELMGGEIGAQS 831


>gi|302391635|ref|YP_003827455.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203712|gb|ADL12390.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 592

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 160/345 (46%), Gaps = 34/345 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES------DG 496
           + +GV     DG+I L NPA   +++ +E + + G +   +  T S   +++      +G
Sbjct: 261 MGDGVIAVDEDGKIILLNPAAEEIFQLKEEK-TLGKY--TMEVTRSHKLDDAIMASLKNG 317

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            D+   I T +  ER             ++   + P+ N +T         +V   R +T
Sbjct: 318 EDITEEIETIYPVER-------------MIRVHVTPIKNDKT-----TERGAVAVLRDVT 359

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E    LR+ ++I+  FV +VS+ELR+PLT+I G+ + L   +      ++ ++++ I   
Sbjct: 360 E----LRRLEQIRTEFVSNVSHELRTPLTSIKGYVETLLDERDCEPGVRE-RFLQVIKDE 414

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L  L+ D+L+L+ +++     +   + LN ++  V  ++  K     I +KV     
Sbjct: 415 TDRLERLITDLLNLSQLESASDSFDQELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVD 474

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +      R +L +++  ++ N + ++S+G  V +K   D       + + G  IPE+   
Sbjct: 475 ITGIKGSRGQLERLYINLVDNGIKYTSEGGQVKIKVYEDEDRVWSEIIDTGMGIPEEDLP 534

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            +F RF  V      +  G GLGLSIV+  +  H G + + S  E
Sbjct: 535 RIFERFYRVDKTRSRKLGGTGLGLSIVKHILERHNGGIEVESKVE 579


>gi|109900024|ref|YP_663279.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109702305|gb|ABG42225.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 903

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 11/230 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E      +A   K+ F+ ++S+E+R+P+  IIG  D++  S    L   Q Q++  + 
Sbjct: 379 LVESKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKS---DLTPTQRQHLNKVV 435

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS IL++L+NDILD + V+AG + +      LN +   +  +I+ +  E N+ ++ I D
Sbjct: 436 YSSQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQEKNLNVRFICD 495

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIF---SVKNNGS 728
             +  + + D  R+ Q+   + SNA+ F+  GS    I      N D +     VK+ G 
Sbjct: 496 PNIPPTLIGDPLRISQVLLNLTSNAVKFTRNGSITISITHDVIPNSDKVLLKARVKDTGI 555

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + ++    VF  F        R   G GLGL+IV+  ++L GG+V+  S
Sbjct: 556 GMSKEQLGKVFESFTQADGTTSRDFGGTGLGLTIVKQLVHLMGGNVTAQS 605


>gi|196231875|ref|ZP_03130731.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196223997|gb|EDY18511.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1088

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 12/267 (4%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV----RAERALTEKNEALRKADE 567
           K  +G L +L+   +        +A  + +  NV  +     RAE ++ +  E    A  
Sbjct: 650 KGSEGPLGVLAAFTMAARAFAQDDAHFLQSVANVLTAAIQRERAEESIRQAREQAELASR 709

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K  F+  +S+ELR+PL  I+GFT L++T  LG      ++ VE++S +   LL+L+N++
Sbjct: 710 AKTEFLSRMSHELRTPLNAILGFTQLMETETLG---PSLAESVEHVSRAGKHLLSLINEV 766

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI---KVISDGKLGSFVADR 684
           LD++ +DAG   L+   I ++  L+E  +SI      + I +      ++      +ADR
Sbjct: 767 LDISRIDAGRFALSPEPIEVHGFLSEAIESIQPLATRHVIPVTLEPATAEMPPLQVLADR 826

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QR+ Q+   ILSNA+ ++     V +    D      ++ + G  I  +    +F  F  
Sbjct: 827 QRVHQVMYNILSNAVKYNRINGRVTVSYRVDGPRIRITIADTGRGIEPEKLSRLFLPFER 886

Query: 745 -NAHRGQRRGVGLGLSIVESFIN-LHG 769
             A      G G+GL++    +N LHG
Sbjct: 887 LGAESTDIEGSGIGLALSRGIVNALHG 913


>gi|298387970|ref|ZP_06997518.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_14]
 gi|298259236|gb|EFI02112.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_14]
          Length = 482

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 120/216 (55%), Gaps = 4/216 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D  K +F+  +S+EL++P+  I+    LL+  ++G LN +Q Q  + I  +S  LL+
Sbjct: 255 KELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKSIKENSERLLS 314

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           +  ++L++  V+AG ++L        +L+    ++   +  + NI+I+V   + K+G   
Sbjct: 315 ITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKLF 374

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
            D +++  + + +LSNA+ +S +   V++  AR  GD I   V++ G  I     KS+F+
Sbjct: 375 VDSEKIAWVLTNLLSNAIRYSKENGRVVI-GARQEGDMIDLYVQDFGKGIDPRYHKSIFD 433

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468


>gi|153869707|ref|ZP_01999246.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
           PS]
 gi|152073825|gb|EDN70752.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
           PS]
          Length = 1183

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  K + L +A++ K+ F+ ++S+ELR+PL +++    +L  +K G+L  KQ +Y + I
Sbjct: 439 ALETKAKELEQANQYKSEFLANMSHELRTPLNSLLILGQILADNKAGNLTDKQVEYAKTI 498

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            ++   LL+L+NDILDL+ V+AG M+L +  ++L +LL+ +K        E ++   + +
Sbjct: 499 HSAGMDLLSLINDILDLSKVEAGKMELRFEAVLLTELLDTLKHKFRHVAEEKSLTFHITL 558

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +D    +   D QRL QI + +LSNA  F+S+G   +
Sbjct: 559 ADELPLTLYTDTQRLQQILNNLLSNAFKFTSEGEVTL 595



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F V + G  IPE+  K++F+ F        RR  G GLGLSI      L GG + + S +
Sbjct: 665 FRVTDTGIGIPEEKQKAIFDAFQQADGTTSRRFGGTGLGLSISRQLAQLLGGELQLESQE 724

Query: 779 EGVTTINCRIPSK 791
              +T    +P K
Sbjct: 725 NQGSTFILLLPEK 737


>gi|123441097|ref|YP_001005086.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088058|emb|CAL10846.1| two-component regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 944

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + ++       
Sbjct: 342 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G  I E    
Sbjct: 402 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT-------TINC 786
            +F  F        RR  G GLGL I E  +   GG +S  S  D G T        +N 
Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRFHLTLDLNE 521

Query: 787 RIPSK 791
            IPS+
Sbjct: 522 AIPSR 526


>gi|26107413|gb|AAN79596.1|AE016758_200 Sensor protein torS [Escherichia coli CFT073]
          Length = 576

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 105 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 161

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 162 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 221

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 222 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 280

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 281 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 327


>gi|326794409|ref|YP_004312229.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326545173|gb|ADZ90393.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 939

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 130/228 (57%), Gaps = 13/228 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+   +++ +K+ F+ ++S+E+R+PL  I+G+  +L+  +L   + +Q  Y++ I+ S+T
Sbjct: 282 NKEATESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQL---DKQQRLYMDTIAQSTT 338

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKL 677
            LL +++DILD + ++AG + L+ + I + D+++EV Q +++    N  + + +I +  L
Sbjct: 339 NLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNASKELDLIPEFDL 398

Query: 678 GS---FVADRQRLLQIFSKILSNAMDFSSKGS---TV-ILKAARDNGDFIFSVKNNGSSI 730
                 + D  R+ Q+ + ++ NA+ F+ +GS   TV IL+ +  +    F + + G  I
Sbjct: 399 DVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKLSFQIIDTGVGI 458

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           PE+   ++F  F        R+  G GLGL I +  +   GG+V +SS
Sbjct: 459 PENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSS 506


>gi|303246661|ref|ZP_07332939.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302492001|gb|EFL51879.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 484

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 11/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  +    L++ + ++  F+  VS+E+R+PLT+I    +L++   LG +N +Q ++++  
Sbjct: 240 AFNDMTRRLKEEERMRTDFIDMVSHEIRTPLTSIRESVNLMRERVLGEVNERQKRFLDIA 299

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S     +  ++  +L ++++ + I+ L+ ST    +L  E+ +  A      +IR+    
Sbjct: 300 SDELQRISVMLTSLLKVSSMASQIVDLSPSTFNPEELAREILEKAAPAAEAKHIRLTPRV 359

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIP 731
              + S V DR+ L Q    ++ NA+ FS    TV+  L+ A      +FS+ + G  IP
Sbjct: 360 GRDIVSVVGDRELLGQALYNLIGNAVKFSPAERTVLVGLEMADGGRKLLFSITDEGPGIP 419

Query: 732 EDMCKSVFNRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           E+    VF+++    +RG R      G+GLGLSI  + +  HGG + +SS      T   
Sbjct: 420 EEEQPHVFSKY----YRGARTKRTTDGIGLGLSIARTIVEAHGGDIWLSSLPGKGCTFYF 475

Query: 787 RIP 789
            IP
Sbjct: 476 TIP 478


>gi|226947584|ref|YP_002802675.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841756|gb|ACO84422.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 464

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D++KN F+  VS+ELR+PLT+I G+   L ++++     K    ++ I   S  L  +
Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G MKLN   I + ++++ V++ +    + N I  K     KL +   D
Sbjct: 297 VEELLDFSKFVSGKMKLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R R+ Q+   +L NA  F+ +G  V L    +       VK+ G  I ++    V  +F 
Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEEYITIVVKDTGVGINKEDLPRVKEKFY 416

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G+ +  G+GLSI +  I LH G + I S +   TTI+ ++P
Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|17228724|ref|NP_485272.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17130576|dbj|BAB73186.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 1749

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 126/251 (50%), Gaps = 2/251 (0%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++TD  + E  L    E  ++  E+K+ FV   S+E R+PL+ I+  ++LL+  +   
Sbjct: 1492 LIDITDRKQLEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSELLEHYRHKW 1551

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               KQ  ++  I  +   +  ++NDIL +   +AG ++     + +      + + I  +
Sbjct: 1552 TEEKQLTHLHRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPRPLDVVAYCQNLVEEI--Q 1609

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            ++ NN ++  IS+ +  S   D + L  I   ++SNA+ +S   S V +K    +   +F
Sbjct: 1610 LNLNNQQVNFISEHQSMSCCMDEKLLGHILINLISNAIKYSPANSNVQVKFYCRDRCAVF 1669

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             V++ G  IP +    +F  F    + G   G GLGL+IV+  +++H G +S+SS+ E  
Sbjct: 1670 EVQDWGIGIPAEDITHLFESFYRAKNVGNILGTGLGLAIVKKCVDIHQGEISVSSNPEVG 1729

Query: 782  TTINCRIPSKE 792
            T     IP K+
Sbjct: 1730 TLFTVNIPLKQ 1740


>gi|319654044|ref|ZP_08008136.1| hypothetical protein HMPREF1013_04755 [Bacillus sp. 2_A_57_CT2]
 gi|317394237|gb|EFV74983.1| hypothetical protein HMPREF1013_04755 [Bacillus sp. 2_A_57_CT2]
          Length = 456

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PLT I G+ D++ +  L      + +Y+  I   +  L +L+ D+ DLA
Sbjct: 237 FLASISHELRTPLTYIKGYADIVHSRNLSI--EDRDKYLNIIREEANRLSDLIKDLFDLA 294

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +D     +    + L D + ++KQ       E  + +KV     L   +AD  RL QI 
Sbjct: 295 KMDKNSFIIQKRYLDLTDFMLKIKQKFTPAFKEKEMELKVSCPEDL-FIMADPSRLEQII 353

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749
             +L NA+ +S  G+  +L  +R   D    +K+NG  IPE+    + NRF  V  +   
Sbjct: 354 FNLLDNAIKYSPSGAKTLLTVSRKKKDIYIKIKDNGKGIPEEDLPYILNRFYRVDKSRTR 413

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSD 778
              G GLGLSIV+  +  HGG +S+ S +
Sbjct: 414 SLGGTGLGLSIVKELVLAHGGKISVKSKE 442


>gi|24112406|ref|NP_706916.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 301]
 gi|24051280|gb|AAN42623.1| similar to histidine protein kinase/phosphatase, aerobic
           respiration sensor-response protein, sensor for arcA
           [Shigella flexneri 2a str. 301]
 gi|313650753|gb|EFS15154.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2a str. 2457T]
 gi|332759936|gb|EGJ90237.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2747-71]
 gi|332762781|gb|EGJ93044.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-671]
 gi|332767790|gb|EGJ97981.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2930-71]
 gi|333019955|gb|EGK39226.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-304]
          Length = 809

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   ++ I+ S   LL +
Sbjct: 344 KASQAKSAFLTAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLQAITDSGESLLTI 400

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 401 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 460

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 461 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 519

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 520 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 566


>gi|55981472|ref|YP_144769.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55772885|dbj|BAD71326.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 468

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 134/264 (50%), Gaps = 24/264 (9%)

Query: 532 PLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           PLP  +T        D V A  +AL      L++A E +  F+Q  S+ELR+P+T I+G 
Sbjct: 216 PLPEPET-------RDEVAALVKALNGMLTRLQEAFEAQTRFLQDASHELRTPITAILGH 268

Query: 591 TD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL+ +    L   Q + +E +   +  +  LV+D+LDL+   +G  ++    + + D
Sbjct: 269 VGYLLRRT---PLTEAQRESLEVVKREAERMGKLVSDLLDLS--QSGAWRIRPVPVRVLD 323

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           LL EV++  A K  +  I ++   D  +   + D  RL Q+ + ++SNA+     G+  +
Sbjct: 324 LLEEVREEFA-KSFDGEILVEAPEDLYV---LGDPDRLHQVMANLVSNAL---KAGARHV 376

Query: 710 LKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
              A D GD  +  V+++G  IPE+    +F RF  V  A   +R G GLGL+IV++ + 
Sbjct: 377 WLRAFDLGDKAVVRVEDDGEGIPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVKAILE 436

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
            HGG V + S     T  +  +P+
Sbjct: 437 AHGGEVWVESQVGKGTAFSFSLPA 460


>gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1333

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 5/232 (2%)

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            A   A+  K+ F+  +S+ELR+PL +++G+ +LL+T +L  +   Q   +E I  S+   
Sbjct: 941  AAEAANHAKDEFLSILSHELRNPLNSMLGWANLLRTHQLEEVTVNQG--LEAIERSAQAQ 998

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             +L++D+LD++ + +G ++++   + L  ++      +       NI+I+   D      
Sbjct: 999  NHLISDLLDVSRISSGRLRMDAQEVELIPVIEAAIAVVRLAAEAKNIQIETKLDPTHTPM 1058

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            + D  RL Q+   +LSNA+ F+     + +            VK+ G+ I  D    VF 
Sbjct: 1059 LGDPIRLQQVIWNLLSNAIKFTPTKGRIDVTLEYTYFQAQIQVKDTGAGIKADFLPYVFE 1118

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            RF           +G+GLGLSIV   + LHGG V + S  EG  +T   ++P
Sbjct: 1119 RFRQADGTRTRSNQGLGLGLSIVRHLVELHGGTVEVESQGEGQGSTFTIKLP 1170


>gi|254788089|ref|YP_003075518.1| integral membrane sensor hybrid histidine kinase [Teredinibacter
           turnerae T7901]
 gi|237686348|gb|ACR13612.1| integral membrane sensor hybrid histidine kinase [Teredinibacter
           turnerae T7901]
          Length = 1140

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 6/244 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T     +R L +  E    A+  K+ ++  +S+ELRSPL +I+G+  LL+  +  S N 
Sbjct: 651 ITAHEETDRKLQQAKEKAEAANSAKSRYLTGISHELRSPLNSILGYAQLLEHDEEISENK 710

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +    V  I  S   L +L+  +LD++ +++G + ++   + ++ LL+++      +  E
Sbjct: 711 RYQLSV--IRNSGEHLSDLIEGLLDISKIESGRLDIHRDQVRISALLDQLVYMFRLQAEE 768

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +R +      L  +V  D +RL QI   +LSNA+ F+ +G        R      FS+
Sbjct: 769 KGLRFEYQCHSVLAEYVTTDEKRLRQILINLLSNAVKFTERGGVSFSVRYRSQVAE-FSI 827

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  IPED  + +F  F  V      Q  G GLGL+I    +++ GG + + ++ EG 
Sbjct: 828 KDTGVGIPEDELERIFRPFERVRTPGSPQVSGTGLGLTITRLLVDIMGGDLEVVNNPEGG 887

Query: 782 TTIN 785
            T  
Sbjct: 888 CTFT 891


>gi|229046907|ref|ZP_04192539.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676]
 gi|228724452|gb|EEL75777.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676]
          Length = 448

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S     TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTVRVELP 447


>gi|190575485|ref|YP_001973330.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
 gi|190013407|emb|CAQ47041.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
          Length = 1168

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 12/239 (5%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+ ++ +E+R+P+T ++G ++LL  S    L+ +Q  Y + I  + 
Sbjct: 792  KQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASP---LDPQQRGYTQSIRHAG 848

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL+L+ND LDLA +++G ++L      L+ LL ++   +     +  +R  + +    
Sbjct: 849  EHLLHLINDALDLARIESGRLELQSKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLPP 908

Query: 678  G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPED 733
            G     D  R+ QI   +LSNA+ F+S+G+  +   AR +G+     F V++ G  I ++
Sbjct: 909  GLQATGDAMRVRQILLNLLSNAVKFTSRGTITL--HARSDGELRALHFEVRDTGPGISQE 966

Query: 734  MCKSVFNRF-VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F RF  ++  R   Q  G GLGL+I         G + + S     T     +P
Sbjct: 967  QQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLP 1025


>gi|162455108|ref|YP_001617475.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161165690|emb|CAN96995.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 714

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +   +K+ F+  +S+ELR+PLT I+G++ LL+    G  +    + +  I  ++    
Sbjct: 323 LERTGRLKDEFLALLSHELRTPLTAILGWSQLLRLR--GPSDEILGRALGTIERNARAQS 380

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV+D+LD++ +  G + L+   + L ++L  + +S         IR+++  +      +
Sbjct: 381 KLVDDLLDMSRIIGGRLSLDVEVVDLTEMLETLLESAEPAAKAKGIRLELSVESAGEQVM 440

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL QI   ++SNAM F+ +G  V +   R+      +V + G  I  +    VF +
Sbjct: 441 GDPNRLQQIVWNLVSNAMKFTRQGGQVKVSLRREGTYARLAVSDTGIGIAPEFLPYVFEQ 500

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVT 782
           F        R   G+GLGLSIV+  + LHGG V  SS+  D+G +
Sbjct: 501 FRQADASTTREYGGLGLGLSIVQHLVELHGGTVEASSAGKDQGAS 545


>gi|159898664|ref|YP_001544911.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891703|gb|ABX04783.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 755

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +++K+ F+ ++S+ELR+PL  II FT  L   + G  + +Q +  E +  ++  LL L+N
Sbjct: 254 NQLKSRFLANMSHELRTPLNAIINFTAFL--DRYGEFSERQRELQERVLYNADHLLGLIN 311

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL+ ++AG M+L Y    L  ++  V  + +    +  + +++    +L + V D+ 
Sbjct: 312 DILDLSKIEAGRMELMYEKTQLEPIITGVMATASGLTRDKGLELELDMPEELPTMVIDKV 371

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED-MCKSVFNRFV 743
           R+ Q+   +LSNA+ F+ +G   +  +  D      SV+++G  I PE         + V
Sbjct: 372 RIRQVLLNLLSNAVKFTEQGQINVTISQPDPETVQISVQDSGIGIAPEHQQQIFEEFQQV 431

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            N    Q +G GLGL I +  + +HGG++ + S+    +T    +P
Sbjct: 432 QNEVTHQYQGTGLGLPISKLLVEMHGGNMWLESTPGKGSTFFFSLP 477


>gi|330814970|ref|YP_004358675.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327367363|gb|AEA58719.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1125

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 123/265 (46%), Gaps = 27/265 (10%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            FV++T S   +  L     A  +A+  K++F+  +S+E+R+PL  I+G  +LL  S   
Sbjct: 491 AFVDMTASQALQHQLRHAKLAADQANAAKSAFLAAMSHEIRTPLNAILGNLELLGHS--- 547

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +LN  Q   ++ I ASS  LL ++ D+LD + ++AG M+L +    L D +       A 
Sbjct: 548 ALNPLQRDRLDTIRASSNGLLAIIQDVLDFSKIEAGEMRLEHMHFRLVDTITRSLAMFAP 607

Query: 661 KMHENNIRIKVISDGKLGSFVA--------DRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
             H   I +       +G F A        D  RL Q+ + +LSNA+ F+ +G   +   
Sbjct: 608 AAHLKRIAL-------VGQFRAAIDQPMRGDPGRLAQVVNNLLSNAIKFTGQGRVTLSLD 660

Query: 710 ---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
              L  AR  G  +  V + G  I      ++FN F+       RR  G GLGL++ +  
Sbjct: 661 VERLPCAR-GGMLVIEVADTGIGIEAAHLSTLFNAFMQADSSISRRFGGTGLGLALCQRL 719

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +   GG + + S     +    R+P
Sbjct: 720 VTQMGGTIDVQSEPGQGSRFTVRMP 744


>gi|255036287|ref|YP_003086908.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949043|gb|ACT93743.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 785

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 14/243 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++ +  +AE+ L +  E    A   K+ F+  +S+E+R+P+  +IGFT LL        
Sbjct: 389 MDIDEQKKAEQELIKAKEQAEMAAVAKSQFLSTMSHEIRTPMNAVIGFTHLLLQQ---DP 445

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN--DLLNEVKQSIAT 660
             +Q +Y+  +  S+  LL L+NDILD + ++AG  K+ +  +  N   LL  ++  +  
Sbjct: 446 KPEQMEYLNILKFSAENLLVLINDILDFSKIEAG--KIEFEEVDFNVLALLENIRSGVLQ 503

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K +E  I +K+ +S+      V D  RL QI + ++SNA+ F+  G   I  A     D 
Sbjct: 504 KANEKGIMLKLKVSNDVNIMVVGDPTRLGQILTNLVSNAVKFTESGKVTISAAVSARADK 563

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F V++ G  IP +  +++F+ F        R+  G GLGL+I +  + L   ++ 
Sbjct: 564 HVTIDFRVEDTGIGIPPEKLENIFDSFTQATSDTTRKYGGSGLGLTITKRLLELQKSNIH 623

Query: 774 ISS 776
           + S
Sbjct: 624 VDS 626


>gi|190890063|ref|YP_001976605.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190695342|gb|ACE89427.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 759

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591
           A   L   +V   V  ER L +  E  R+  E     K+  +  VS+E+R+PL+ I+G T
Sbjct: 206 ADGRLLLHSVARDVTEERLLAQGREQARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMT 265

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  ++L     +Q  Y+  I  S   L  LV D+LD +T++ G  +L+  +  L  LL
Sbjct: 266 HLLAETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFELHPRSESLRKLL 322

Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V + +A + HE  I I   +S     +   D  RL Q+   ++ NA+ F+  G  V +
Sbjct: 323 ESVVEMLAHRAHEKGIEIGATVSSDVPQNMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 381

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
           + + D G+ + +V ++G  +  +    VF  F        +  G GLGL+I    +   G
Sbjct: 382 RVSLDAGNLLITVADSGPGMTAEEQARVFGEFEQGGTVADKSAGTGLGLAISARIMREFG 441

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G ++++S     +    R P
Sbjct: 442 GALTVASEKGLGSEFTIRFP 461


>gi|183220974|ref|YP_001838970.1| putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911069|ref|YP_001962624.1| two component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775745|gb|ABZ94046.1| Two component response regulator, part [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779396|gb|ABZ97694.1| Putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 540

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 8/251 (3%)

Query: 542 FVNVTDSVRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + +  +S+  ER L  +   E L +A + K  F+ HVS+ELR+PL +IIGF+ L+   +L
Sbjct: 291 YKSTLESLILERTLDLSRTKEELERAYKAKTEFLAHVSHELRTPLNSIIGFSKLI---QL 347

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              +    +Y++YI +  T LL ++N+IL L  +++G + L  S     ++  +  + I 
Sbjct: 348 PENDITGKEYLQYIYSGGTRLLKMINEILSLMKIESGQLNLQISEFKPEEIARQSLELIQ 407

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +     + I+     +  +  +D  ++ QI   +LSNA+ +    S V        G  
Sbjct: 408 PQADAKGMEIRFFPPIQSKNIRSDAGKIQQILLNLLSNAIKYGDH-SYVEFHCEWIEGRV 466

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-D 778
            FSV++ G  I E+    +F+ F      G+  G GLGLSI +      GG++ ++S   
Sbjct: 467 TFSVRDFGPGITEEDQSRIFHSFTRLNDDGKIEGSGLGLSISQGLAEKLGGNIELTSLWG 526

Query: 779 EGVTTINCRIP 789
           EG T I  +IP
Sbjct: 527 EGSTFI-LKIP 536


>gi|317492549|ref|ZP_07950976.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919299|gb|EFV40631.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 952

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 128/252 (50%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    
Sbjct: 444 VMVDVSARVKIEESLQELANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 500

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  +  + +  +S SS +LL +++DILD + +++  +K+   T     ++  +  +   
Sbjct: 501 SLPEETQRLLAAMSNSSGLLLKIISDILDFSKIESEQLKIEPGTFEPRKVIPHIIGNYLP 560

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    + +    + ++   VA D  R+ Q+ S +LSNA+ F+  G  +IL+    +   
Sbjct: 561 LVVRKRLVMYCFIEPEVPDSVAGDIMRIQQVLSNLLSNAIKFTDTG-CIILQVRVQDFYL 619

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F +++ G  IP      +F+ F       QR  +G GLGL+I E  ++L  G +++ S 
Sbjct: 620 EFRIRDTGLGIPFRDVMKLFDPFFQVGTGVQRHFQGTGLGLAICEKLVSLMDGDIAVESE 679

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 680 PGMGSIFTVRIP 691


>gi|298244532|ref|ZP_06968338.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297552013|gb|EFH85878.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 856

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 11/238 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+ELRSPLT +   T LL+  +  ++   Q+      S  + 
Sbjct: 620 NSARKELEQRKDDFISMASHELRSPLTALKMHTSLLR--RQLAMQGFQTSAPALSSMETQ 677

Query: 619 I--LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           I  +  LV ++LD++ + AG ++    T+ L+ LL E    IA  M + +    ++  G 
Sbjct: 678 INKVTRLVEELLDVSKIQAGRLEYRQETVDLDALLRE----IADTMQQTHPSHSILVRGA 733

Query: 677 L-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +  + +ADR RL Q+F+ ++SNA+ +S    TV +            V+++G  IP +  
Sbjct: 734 VQANLMADRDRLGQVFTNLISNAIKYSPGAETVEMDLEASPETVTIRVRDHGLGIPREQR 793

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +F RF  V+   +    G+G+GL IV   +  HGG +++ S+    +     +P K
Sbjct: 794 DKIFERFYRVTGPKQKAIPGLGMGLYIVAEIVKRHGGTITVESAVGKGSIFTVTLPKK 851


>gi|229145815|ref|ZP_04274195.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24]
 gi|228637646|gb|EEK94096.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24]
          Length = 448

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNNGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S     TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTVRVELP 447


>gi|120435810|ref|YP_861496.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
 gi|117577960|emb|CAL66429.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
          Length = 400

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 13/213 (6%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F   VS++L+SPL NII  ++LLK    G  N    QY+EY+  SS  L N ++ IL   
Sbjct: 184 FASLVSHDLKSPLANIISLSELLKDENEGKFNEDTEQYIEYLVESSYSLRNYIDGILGFY 243

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQ 689
             D  +++ +Y+ + L  LL  +     T +++  ++I I    D  L +   ++  L Q
Sbjct: 244 RSDH-VLEKDYTNVDLRKLLKGI-----TDLYQVSDDIEIAYPDDVMLHN--VNKAALTQ 295

Query: 690 IFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NA 746
           +F  ++SN++ ++ K    V +  +++   + F VK+NG  IPE+  K +F+ F +   A
Sbjct: 296 VFMNLISNSLKYNDKDLRKVDIGFSKNEEYYFFEVKDNGKGIPEEKFKDIFDLFTTLETA 355

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            R    G G+GL+ V+  I   GG +SI S  E
Sbjct: 356 DREGNHGSGIGLATVKKLIESMGGTISIESEPE 388


>gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 453

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 29/349 (8%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++ +++GV       R+ L NPA + ++  +EN       I+ I     R Y E D  DL
Sbjct: 119 LNSMADGVIALDKYRRVILLNPAVKDVFGLKENEGLGMDLIKVI-----RNY-ELD--DL 170

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN--VTDSVRAERALTE 557
           F+    +  +++  +   L++L+     + +   P     L  +N  +   V   R +TE
Sbjct: 171 FS---QALHNQKTIVSNELQILTPEPRFFRVHVSP-----LKGINGEIIGVVGLLRDITE 222

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISA 615
           +    RK + ++  FV +VS+ELR+PLT+I GF   L+T   G++   ++   ++E ++A
Sbjct: 223 R----RKLERMRTEFVANVSHELRTPLTSINGF---LETLLDGAIEDPKTARHFLEIMNA 275

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L NL++D+L L+ ++     LN   + L D++N   Q    +  E  I++  +   
Sbjct: 276 ETKRLANLIDDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIKLFTVLPD 335

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           KL     D   L Q+   ++ NA+ ++     V +    +       V + G  IP++  
Sbjct: 336 KLPQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVGVNLNREKVRVYVADTGIGIPQEDL 395

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             +F RF  V  A      G GLGL+I +  + +HGG + + S   G T
Sbjct: 396 PRIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPGGST 444


>gi|164428217|ref|XP_956617.2| hypothetical protein NCU01833 [Neurospora crassa OR74A]
 gi|157072058|gb|EAA27381.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1951

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 15/221 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1257 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1313

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKLNY       L+ +V + ++T      + +  + +  + ++V
Sbjct: 1314 MIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1373

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI--------FSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F+++G      K    N   +        FS+ + G    
Sbjct: 1374 KGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKVVVPNHGHLYENEIMLEFSIIDTGRGFT 1433

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
            E+  + +F  F  +  +   Q  G GLGL I    + LHGG
Sbjct: 1434 EEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1474


>gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  IIG   L   S+      +   Y+E I+ S+  LL L+NDIL
Sbjct: 414 KSEFLANMSHEIRTPMNAIIGLGQLALKSQPPP-PPRLYDYLEKITGSAATLLTLINDIL 472

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRL 687
           D + ++AG + ++     L+++LN++   +A +  E  + +    D G     V D  RL
Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRL 532

Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFV 743
            Q+   + SNA+ F+ +G  T+  + A    D +    +V++ G  +  +  + +F  F 
Sbjct: 533 GQVLINLTSNAIKFTQQGEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFT 592

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
                  R+  G GLGLSI    + L GG + + S+    +T +
Sbjct: 593 QADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFS 636


>gi|322804626|emb|CBZ02178.1| osmosensitive K+ channel histidine kinase KdpD [Clostridium
           botulinum H04402 065]
          Length = 464

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 4/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D++KN F+  VS+ELR+PLT+I G+   L ++++     K    ++ I   S  L  +
Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G MKLN   I + ++++ V++ +    + N I  K     KL +   D
Sbjct: 297 VEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R R+ Q+   +L NA  F+ +G  V L            VK+ G  I ++    V  +F 
Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELSTKYKEEYITIVVKDTGVGISKEDLPRVKEKFY 416

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G+ +  G+GLSI +  I LH G + I S +   TTI+ ++P
Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1131

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 122/256 (47%), Gaps = 17/256 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A ++L  K   L    + K++F+ ++S+ELR+PL +++    LL  +K  +L +KQ +Y 
Sbjct: 437 ARQSLALKARELEVTSQYKSAFLANMSHELRTPLNSVLILAKLLADNKPDNLTAKQIEYA 496

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-I 669
             I  S   LL L+NDILDLA ++AG + +   ++ +  ++ ++ Q       E  ++ I
Sbjct: 497 TIIHRSGNDLLTLINDILDLAKIEAGHITVLRESVPVKSIVRDLTQLFTVVAEEKKVQLI 556

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------------RD 715
             + +      + DR R+ QI   +LSNA  F+ +   + L  +              ++
Sbjct: 557 TKLHESVPAEILTDRLRIEQILKNLLSNAFKFTPRDGRITLSLSVETSFPKITRQELRKE 616

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +V + G  IP D  + +F  F  V  +   +  G GLGLSI    I   GG ++
Sbjct: 617 KSLLAIAVSDTGIGIPADKQQLIFEAFQQVDGSTSRKYGGTGLGLSISRELIKRLGGEIT 676

Query: 774 ISSSDEGVTTINCRIP 789
           + S +   +T    +P
Sbjct: 677 LHSEEGKGSTFTLWLP 692


>gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
 gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
          Length = 1125

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +KNE L++AD +K+ F+   S+ELR+PL  ++G  + +     G L  +Q   +  I 
Sbjct: 442 IKQKNEELQQADRMKDDFLATTSHELRTPLHGMVGIAESMLAGAEGPLPERQKHQLRMII 501

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLV+D+LD   +  G ++++   +   + +  V +  +  +    +RI     
Sbjct: 502 NSGERLSNLVDDLLDYHKMRYGDVEISPQAVDTANAVRLVIELSSRLLGGKPVRIINQVP 561

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD QRL Q+   ++ NA+ ++ +G  +I+ A    G     V + G  IP D 
Sbjct: 562 IDLPLVRADGQRLEQVLYNLIGNAIKYTDEGK-IIISATVLQGQLRIQVVDTGQGIPSDQ 620

Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F        ++   R+G GLGLSI    I++ GG + +SS     TT +  +P
Sbjct: 621 LEYIFEPLTQARESNTQYRQGAGLGLSISRQLIDIMGGQLYVSSQPMVGTTFSFTLP 677


>gi|239787729|emb|CAX84244.1| Sensor protein [uncultured bacterium]
          Length = 817

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 12/247 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +  +A   A   K+ F+ ++S+E R+ L  I+GF  LL  +  G   ++Q + +  
Sbjct: 325 RELLQTKQAAEAASHAKSVFLANMSHEWRTTLHTILGFARLLLRN--GVTATEQQESLHI 382

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+LVND+L+++ +++G M LN   + L  LL ++   +  +  E ++   V 
Sbjct: 383 IEKSGQHLLDLVNDVLEISRIESGTMTLNQECVDLPGLLADMGNMMRLRATERSLSFVVT 442

Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST---VILKAA---RDNGD--FIFSV 723
               +  +V  D  +  Q+   +L NA+ F+ +G     V L+ A   + +G    I  V
Sbjct: 443 LSEDIPRWVCMDGGKWRQVLLNLLGNAIKFTRQGGVTMRVALQPAPMEQPDGKPMLICEV 502

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I E   + +F  F+   H  G   G GLGL+I   ++ L GG +  +S     +
Sbjct: 503 EDTGEGIAEQDMQRIFEPFIQVGHSAGSMEGTGLGLAISRHYLRLMGGELEATSQRGAGS 562

Query: 783 TINCRIP 789
              CR+P
Sbjct: 563 LFRCRVP 569


>gi|163795854|ref|ZP_02189818.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159178887|gb|EDP63423.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 476

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 125/234 (53%), Gaps = 11/234 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---ISASSTIL 620
           +A+  K++F+ ++S+ELR+PL  IIGF+++L+T   G +   Q +Y+EY   I+ +   L
Sbjct: 241 EANRAKSAFLANMSHELRTPLNAIIGFSEVLQTETFGPIG--QKRYIEYATDINMAGYHL 298

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L++++++LDL+ ++AG + LN STI    ++      +      + + I+      +   
Sbjct: 299 LHVIDEVLDLSKIEAGKVDLNLSTIDPTGVIAAALDMLGPDSERHGVEIQRALTATIPVM 358

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPED---MC 735
             D  +L QI   ++SN++ ++  G +V +    D        ++ + G  + +D   + 
Sbjct: 359 ETDEGKLRQIVLNLVSNSLKYTKPGGSVTVSTEVDTDLSATQITISDTGVGMSKDELALA 418

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + F R + +A    R G GLGL + +SF++L GG   I S     TT++ ++P
Sbjct: 419 MTPFGR-IDSAMSYTRGGTGLGLPLTKSFVDLLGGSFQIDSVPGVGTTVSIQLP 471


>gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 1107

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 7/243 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++T+    E  L        +A   K SF+ ++S+E+R+P+  IIGF+DLL  +    
Sbjct: 511 LVDITERKEYEAKLEHAKLQAEEAANAKQSFMANMSHEIRTPMNAIIGFSDLLMDT---P 567

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q +++  ++ ++  LL L+N+ILD A ++ G + +      L  +++ +  +   +
Sbjct: 568 LSKEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFNLKPVIDSIISTFWLE 627

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + N+ + + I+     ++  D  RL QI + ++ NA+ F+ +G+  +  +   N    
Sbjct: 628 AKKKNLNLTLNINKSVSTAYYGDPDRLRQILTNLIGNAIKFTEQGAVTVTVSTTQNNHLF 687

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL-HGGHVSISSS 777
           F V++ G  I +D  K+VF  FV       RR  G GLG +I +  + L HG    +S  
Sbjct: 688 FEVQDTGIGIAKDRIKAVFQPFVQADGTTTRRFGGTGLGTTISKQLVELMHGSIDLVSEV 747

Query: 778 DEG 780
           D+G
Sbjct: 748 DKG 750


>gi|113477573|ref|YP_723634.1| periplasmic sensor hybrid histidine kinase [Trichodesmium
           erythraeum IMS101]
 gi|110168621|gb|ABG53161.1| periplasmic sensor hybrid histidine kinase [Trichodesmium
           erythraeum IMS101]
          Length = 750

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 123/252 (48%), Gaps = 21/252 (8%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V + +S  +   L +K +    A++ K+ F+ ++S+ELR+PL  I+G+T++L  S+  + 
Sbjct: 244 VKLANSYYSLDFLEQKRQVADAANKAKSEFLANMSHELRTPLNGILGYTEILSRSE--AW 301

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             K+ + ++ I    + LL L+NDILD++ ++A  ++L    I L   L  + + I  + 
Sbjct: 302 GEKEKKGIDIIHQCGSHLLTLINDILDISKIEARKLELQPQAIHLPSFLQGIGEIICIRT 361

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------------ 709
            +  +    + D  L    V D +RL Q+   +L NA  F+ KG                
Sbjct: 362 EKKGVDFVYLPDANLPEGIVTDPKRLRQVLINLLGNAAKFTEKGQVTFKVRIIDSMAEQK 421

Query: 710 ---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
               +  +DN    F +K+ G  I  D  + +F  F      G+R   G GLGL+I ++ 
Sbjct: 422 KDKAQIPQDNVRLSFQIKDTGIGISPDSLEKIFQPF-EQVGEGKRHSEGTGLGLTITDNI 480

Query: 765 INLHGGHVSISS 776
           ++L G ++ + S
Sbjct: 481 LSLMGSNIQVKS 492


>gi|298247450|ref|ZP_06971255.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550109|gb|EFH83975.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 648

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 163/367 (44%), Gaps = 21/367 (5%)

Query: 440 IDHLSEGV-AVFGPDGRIKLSNPAFRSLWKTEENRLSP-----GTHIRNIAATCSRYYNE 493
           +D LS GV  V G D R+  +N +   +W T+   L P      TH   I     + Y  
Sbjct: 289 LDSLSCGVFLVTGADARLLFANRSAHQVWGTQWPFLQPLIEFLRTHDITILNAQGQPYA- 347

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            D    F A      +    LQ  +       L   I   P    +   + +  S RA  
Sbjct: 348 PDEMATFRAFKKG--EHVHGLQSIVSRHDGKRLPILIYAEPF--ELPANMGLPASERAVL 403

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQY 609
            + +   A+++A+ +K+ FV+ V++EL++PL  +  + DLL    K   + +L   Q + 
Sbjct: 404 LMYQDITAIKEAEYLKDEFVEIVAHELQNPLNTLASYADLLQRDIKAENIPALTPHQQKA 463

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I+ S++ L +L  D+LD+  + AG + LN  ++ +  L+ +V   +      + I  
Sbjct: 464 IAAITESTSSLSSLTEDLLDVTRLQAGRLVLNLQSVNIVPLIQQVIARLQATTSRHQIEF 523

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNG 727
           +  S+  L     D  RL QI   I+ NA+ +S +G  +++  K   +    +  V++ G
Sbjct: 524 QASSETMLAH--VDPARLEQIMHNIIDNAIKYSPEGGPILMAFKEEPEQQRILGKVQDQG 581

Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP+     +F RF+   NA   Q  G+GLGL +    I L GG +S  S +   +T  
Sbjct: 582 IGIPKQQHGRIFGRFMRADNARARQIPGIGLGLYLCHELIELMGGSISFDSEEGQGSTFY 641

Query: 786 CRIPSKE 792
              P  E
Sbjct: 642 VTFPVGE 648


>gi|255524740|ref|ZP_05391691.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255511513|gb|EET87802.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 330

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 141/273 (51%), Gaps = 10/273 (3%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL---RKADEIKNSFVQHVSYELRSPL 584
           Y I  L   + ++ + +++ S+  ++ ++EK + +   R+ ++++  F  ++S+EL++PL
Sbjct: 20  YYIYRLSAEEIVVVYDDISKSIEQQKTISEKEQIIYKTRELEKLRTEFFANISHELKTPL 79

Query: 585 TNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASST---ILLNLVNDILDLATVDAGIMKL 640
             I+G   L K       N   + + +  I+        LL L+N+++D   +D+  ++L
Sbjct: 80  NIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLLRLINNLIDSTEIDSKFIEL 139

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N     + +L+ E+ QS+A K   NNI I   +D +      D  ++ +I   +LSN++ 
Sbjct: 140 NMVNCNIVNLVEEITQSVA-KYINNNISITFDTDLEEKIIACDLDKVGRIILNLLSNSVK 198

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           F+  G ++ +    D      +VK+ G  IP++   ++F+RF  V  +   +  G G+GL
Sbjct: 199 FTEPGGSIFVNIIDDKDYITITVKDTGIGIPQNKLNTIFDRFRQVDKSFTRKNEGSGIGL 258

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SIV+S + +H G + + S     T    ++P+K
Sbjct: 259 SIVKSLVEMHKGSIFVESKYGIGTKFTIKLPAK 291


>gi|255585092|ref|XP_002533252.1| ethylene receptor, putative [Ricinus communis]
 gi|223526932|gb|EEF29137.1| ethylene receptor, putative [Ricinus communis]
          Length = 739

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 134/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDHARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G  +L+  TI L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSFQLDMGTINLHAVFREVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + I +     L  + + D +RL+Q    ++ NA+ FS +G+ +I         
Sbjct: 432 PIASVKKLPITLTLSPDLPEYAIGDEKRLMQTILNVVGNAVKFSKEGNILITASVAKLES 491

Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           LK  R         DN  ++   VK+ G  + P+D+ K +F +F  +     R   G GL
Sbjct: 492 LKDLRLPDFFPVTSDNHFYLRVQVKDEGLGVNPQDIPK-LFTKFAQSQSLATRNSGGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 551 GLAICKRFVNLMEGHIWIESEGLG 574


>gi|254446460|ref|ZP_05059936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260768|gb|EDY85076.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 998

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +A   A   KN F+  +S+E+R+P+  IIG + LL       ++ +QS +V  I 
Sbjct: 474 LEEAKQAAESASRTKNVFLASMSHEIRTPMNAIIGLSSLLAEM---DMSKEQSNFVGTIR 530

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS+  LL+L+NDILD   ++A  ++L      L +++ E+   ++ +  E  +      D
Sbjct: 531 ASAESLLSLINDILDYTKIEANELELEEVPFDLREIMEELTGMVSLQADEKGLGFSCYLD 590

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSS 729
               G  + D  R+ QI   + +NA+ F+  G   I  A  +  D      FSVK+ G  
Sbjct: 591 TATEGMVLGDPGRVRQILLNLATNAIKFTISGRVDISGACIEETDTHYVLGFSVKDTGIG 650

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPE    S+F+ F  V +    +  G GLGL+I +      GG + ++S
Sbjct: 651 IPETAFGSLFDSFRQVDSTTTRKYGGTGLGLAICKRLCEKMGGEIQVTS 699


>gi|291561249|emb|CBL40048.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 468

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +++E + K+ +++  F  +VS+EL++PLT I G+ +L++    G       ++   I 
Sbjct: 209 IRQQHEDILKSSQVRQEFTANVSHELKTPLTAISGYAELIEHGMSGE---NTERFASEIH 265

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL L+NDI+ L+ +D G   + Y  + L  L  E    +     + N+ I+V   
Sbjct: 266 KNAARLLTLINDIIQLSQLDGGKKDVEYRDLDLFPLARECVDMLQMNAQKQNVTIRV--Q 323

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G      AD+Q + ++   +  NA+ ++ K  TV +    +NG    SVK+ G  I  + 
Sbjct: 324 GGEAPVFADKQLMEELIYNLCDNAIRYNKKDGTVTVTTGIENGHTFLSVKDTGIGISAEH 383

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + VF RF  V  +      G GLGL+IV+  +  HG  +++ S
Sbjct: 384 QERVFERFYRVDKSRSKATGGTGLGLAIVKHIVAQHGAKLTLES 427


>gi|284037395|ref|YP_003387325.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283816688|gb|ADB38526.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 784

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L  AQ  L    +T +++  RA   K EA   A+  K+ F+ ++S+ELR+PL  I+G+T 
Sbjct: 281 LLQAQEQLEATVLTRTLQLARA---KEEA-ELANRAKSEFLANMSHELRTPLNGILGYTQ 336

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L K  +  +L+  Q + V+ I   +  LL L+ND+LDLA ++A  + +  +   L  L  
Sbjct: 337 LFKRDE--ALSPNQLKGVDIIHNCAENLLVLINDVLDLAKIEAQKLDVQTAPFHLTALFQ 394

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           ++   I  +  +  +R        L ++V  D ++L Q+   +L NA+ F+  G  V L+
Sbjct: 395 DLIHLIGVRAEQKGLRFLADLAPDLPAWVMGDERKLRQVLLNLLGNAVKFTETGG-VTLR 453

Query: 712 AARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFI 765
             R +         F V++ G  I  D    +F  F      GQ   G GLGLSI +  +
Sbjct: 454 VERASTKAQPYRLRFVVEDTGIGIASDHLAGIFKPFQQVRETGQFIEGTGLGLSITDQLV 513

Query: 766 NLHGGHVSISSS-DEG 780
            L GG + +SS+ DEG
Sbjct: 514 QLLGGDLRVSSAIDEG 529


>gi|238897326|ref|YP_002923003.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA, regulates multidrug resistance [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465081|gb|ACQ66855.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA, regulates multidrug resistance [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 1209

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 12/247 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L+   E   +A+  K++F+  +S+E+R+P++ IIG  +L+ TSK   ++  +  YV Y
Sbjct: 695 KILSITRERAEQANRAKSTFLATMSHEIRTPISAIIGLLELVVTSKEHVVSDDEPIYVAY 754

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
            SA S  LL L+ DILD+A +++G ++LN + +  ++L+  V +       + N+R+   
Sbjct: 755 QSAQS--LLGLIGDILDMAKIESGKLELNPAWVSFHELILPVVKVFDGLARQKNLRLSCE 812

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---------FS 722
           I  G       D  R  Q+ S +LSNA+ F+  GS  +L       + +           
Sbjct: 813 IKTGHPDEVYIDPMRFRQVLSNLLSNAIKFTEIGSVDVLVKCISKKEPLETHQIQRLEVK 872

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           VK+ G  I +   K VF  +  +    ++ G GLGLSI    + +  G + ++S     T
Sbjct: 873 VKDTGVGISQADQKLVFQPYSQSDFGKKQSGTGLGLSICLQLMQMMNGSIKLNSELHQGT 932

Query: 783 TINCRIP 789
            +   +P
Sbjct: 933 CVELSVP 939


>gi|149187870|ref|ZP_01866166.1| sensory transduction protein kinase [Vibrio shilonii AK1]
 gi|148838266|gb|EDL55207.1| sensory transduction protein kinase [Vibrio shilonii AK1]
          Length = 916

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 11/231 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L  K EA R A+  K+SF+ ++S+E+R+PL  IIG + +L  S L  +   Q  Y+  
Sbjct: 383 RMLAAKEEAER-ANVAKSSFLANMSHEIRTPLNGIIGMSGILSESNLDPI---QRDYLNT 438

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I  SS  LL L+NDILD++ +++G + ++  +  L ++  +    + +K  E ++++++ 
Sbjct: 439 IDTSSQTLLILINDILDISKIESGNLLISLHSSNLREIAYDTIAIVMSKAKEKDLQLQIR 498

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNG 727
            S       + D  RL QI   ++SNA+ F++KG       + +         F++ + G
Sbjct: 499 FSPQMPHMLIIDDHRLRQILMNLMSNAVKFTNKGHVRMEINVTEIDEQRCSIYFAIVDTG 558

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I +D   S+F  F        R+  G GLGL+I    + L GG++ I S
Sbjct: 559 IGIDKDKQDSIFKPFTQEDSSVTRQYGGTGLGLAISSQLVELMGGNIEIDS 609


>gi|93005211|ref|YP_579648.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
 gi|92392889|gb|ABE74164.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
          Length = 1169

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 7/211 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+ ++S+ELR+PL +I GF +LL  ++ G LN +Q  YV+ I  SS  LL LVND
Sbjct: 308 QAKSAFLANISHELRTPLNSIDGFINLL--ARHGELNPEQDLYVQTIRKSSAHLLALVND 365

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           +LD + ++AG + L+     L D + +V   ++    E  +R+ V+    +   +  D  
Sbjct: 366 VLDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEKGLRMAVLFYNDVPMRINGDAL 425

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFV 743
           RL Q+ + I+ NA+ F+  G  V+  +  D  D   + SV+++G  I     K +F  F 
Sbjct: 426 RLKQVLTNIVGNAIKFTDSGDVVVRVSLDDYQDNYLMISVQDSGKGISLSDQKMLFQSFS 485

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  R+  G GLGL I +    L GG +
Sbjct: 486 QGDPSITRQYGGTGLGLVISKQLTRLMGGDI 516


>gi|298293988|ref|YP_003695927.1| histidine kinase [Starkeya novella DSM 506]
 gi|296930499|gb|ADH91308.1| histidine kinase [Starkeya novella DSM 506]
          Length = 432

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 130/277 (46%), Gaps = 26/277 (9%)

Query: 523 DSVLEYSIIPL---------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           D  L   I+P+         P    +L FV++T                R+ ++++  F+
Sbjct: 160 DRWLRADIVPIRPGPARDGAPTEAVLLGFVDLTPQ--------------RRVEQMRVDFI 205

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            + S+ELR+PL ++ GF + L+       N+++ ++++ +   +  +  L++D+L L+ +
Sbjct: 206 ANASHELRTPLASLSGFIETLQGPARNDANARE-RFLKIMGEQARRMSRLIDDLLSLSRI 264

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +        + I L  +++ V+ ++     E  + I         +   DR  L+++F  
Sbjct: 265 ELNAHLRPEAEIDLVSVISHVRDALGPLGRERGVEIAFEHPQPPVNVRGDRDELIRVFEN 324

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           ++ NA+ +   G  V +  AR+ GD + SV++ G  I  +    +  RF  V  AH  ++
Sbjct: 325 LVENALKYGGAGGRVEIAIAREGGDAVVSVRDYGPGIAPEHVPRLTERFYRVDTAHSREQ 384

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+IV+  +  H G + I S     +T + R+
Sbjct: 385 GGTGLGLAIVKHIVARHRGKLGIESVPGEGSTFSVRL 421


>gi|167768187|ref|ZP_02440240.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1]
 gi|167709711|gb|EDS20290.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1]
          Length = 762

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 139/272 (51%), Gaps = 13/272 (4%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++G + +L  S  E   I   N  T L  +N T+  +A+RA  +  E    A + K+ F+
Sbjct: 317 IKGIVTVLRKSQSEAIEIEREN-NTRLETIN-TELTQAKRAAEQAFEVANNASQSKSDFL 374

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  I+G T L++         K  +YV+ I  S+  LL ++ND+LD++ +
Sbjct: 375 ASMSHDIRTPMNAIMGITSLIRHD--AGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKI 432

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           +AG    +YS   + + + E++     +  E +  + +  +  +  +V +D   L+QIFS
Sbjct: 433 EAGKTVFSYSDFSILEFMQEIQTMFCPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFS 492

Query: 693 KILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--S 744
            +LSNA+ ++ KG  +          +     + F+V +NG  + ED    +F+ F    
Sbjct: 493 NLLSNAVKYTQKGGKIQFLVEECETKSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREE 552

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++   + +G GLG++I ++ I   GG + + S
Sbjct: 553 SSLTNKIQGTGLGMAITKNLIEAMGGTIDVDS 584


>gi|94271091|ref|ZP_01291888.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450562|gb|EAT01700.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 421

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 34/253 (13%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+PL  IIGF++L     L   +    QY+E I  +   LL L+N IL
Sbjct: 6   KSRFLSAMSHEIRTPLQTIIGFSNL----ALEGGSQPPRQYLEMIKTAGDTLLELINGIL 61

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           DLA +++G ++L        + + +  +  A    +  +      D  + G  V D  RL
Sbjct: 62  DLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSIDPAVPGEVVGDPARL 121

Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGD------------------------FIFS 722
            Q+   ++ NA+ F+ +G  V+ ++ A D+ D                          F+
Sbjct: 122 TQVLVNLVGNALKFTEEGEIVVSVRPAADDADRRPTVGAGRAEVAPPAASDATSGLLHFT 181

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGV 781
           V+++GS I  +    +FNRF          G GLGL+I  S + L GG + + S   EG 
Sbjct: 182 VRDSGSGIAAEQQGRIFNRFAQGEGISTHGGHGLGLAIAASLVELMGGEIWLESRPGEGS 241

Query: 782 T---TINCRIPSK 791
           +   TI  R+P  
Sbjct: 242 SFHFTIAYRLPPP 254


>gi|82702320|ref|YP_411886.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410385|gb|ABB74494.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 697

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +NEA R A  +K+ F+  +S+ELR+PL  I+G++ L+ +  L   +  +   +E I  ++
Sbjct: 306 RNEAER-ASRLKDEFLATLSHELRTPLNAILGWSQLILSGNLKKEDIHRG--LETIERNA 362

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +   L+ D+LD++++ +G ++L+     + +L+    +S+        + +K     K 
Sbjct: 363 RVQNKLIEDLLDMSSIISGKVRLDMRRQDIANLVETAVESVKPTAQAKGVILKKTLGKKF 422

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            S + D  RL QI   +LSN++ F+ KG  + +   + N      + ++GS I       
Sbjct: 423 DSIIGDSNRLQQILWNLLSNSIKFTPKGGKIEVTVEQRNLFLEIRISDSGSGITSAFMPY 482

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           VF+RF        R+  G+GLGL+IV+  + LHGG V   S  EG
Sbjct: 483 VFDRFRQGDASLTRQYGGLGLGLAIVKQLVELHGGTVRAESPGEG 527


>gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1]
 gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 1616

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
            F +V+    AE ALT   E    A  +K+ F+ ++S+E+R+P+  IIG + L LKT    
Sbjct: 859  FQDVSAEKLAEAALTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTE--- 915

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             L  +Q  YV+ I ++   LL ++NDILD + ++AG + + ++   L+ +L+ +   +  
Sbjct: 916  -LTPRQHDYVKKIQSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTE 974

Query: 661  KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
            K    ++ +   I      + V D  RL QI     +NA+ F+  G   I+   ++  + 
Sbjct: 975  KTRAKSLELVFDIPSEVPRTLVGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSET 1034

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F+V++ G  I  +    +F  F        R+  G GLGL+I +    L GG V 
Sbjct: 1035 EVLLYFAVRDTGIGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVG 1094

Query: 774  ISS 776
            + S
Sbjct: 1095 VES 1097


>gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase /
           response regulator hybrid [Rhodopirellula baltica SH 1]
 gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine
           kinase / response regulator hybrid [Rhodopirellula
           baltica SH 1]
          Length = 871

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 35/262 (13%)

Query: 544 NVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           ++TD  R+E AL   +EA+R AD     K+ F+ ++S+E+R+P+  +IG  DLL  +KL 
Sbjct: 277 DITDLKRSEAAL---HEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL- 332

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +  Q  YV+ I  SS  LL L+NDILD + ++A  ++L      L   +    +S + 
Sbjct: 333 --DPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSF 390

Query: 661 KMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-------- 711
           K  E  + + + IS       + D  R+ Q+ + ++ NA+ F+  G   +          
Sbjct: 391 KASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREER 450

Query: 712 AARD------------NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           A RD              D +    SV ++G  IP     +V N F        RR  G 
Sbjct: 451 ADRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGT 510

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLGLSI    + L GG + + S
Sbjct: 511 GLGLSISRQLVELMGGELHLQS 532


>gi|121605766|ref|YP_983095.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
 gi|120594735|gb|ABM38174.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
          Length = 1261

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 130/260 (50%), Gaps = 16/260 (6%)

Query: 529  SIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +I+PL N+   +T     F ++T+  R E+   E+ +AL +  + K+ F+  +S+ELR+P
Sbjct: 842  NIVPLRNSWGEITGAINCFYDITERSRLEQKTQEQAQALAELHQRKDEFLAMLSHELRNP 901

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  +     LL+  K     + Q Q +  I   +  L +LV+D+++++ + +G ++L   
Sbjct: 902  LAPLASAVQLLQRQK---NEAPQQQALSIIERQTGQLKHLVDDLMEISRITSGSVRLRQE 958

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             + L D++    ++    M +    + V    +     AD  RL Q+   +L+NA  ++ 
Sbjct: 959  RVSLGDVVERALETTRPLMLQRRHELAVSLPPEPLWLHADATRLEQVLVNLLTNAAKYTD 1018

Query: 704  KGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
            KG  + L A ++     G  +  V++ G  I  ++   +F+ F + A R   R   G+G+
Sbjct: 1019 KGGRIWLSAGQEEAAGTGAAVVRVRDTGIGIAPELLPRIFDLF-TQAERSIDRSQGGLGI 1077

Query: 757  GLSIVESFINLHGGHVSISS 776
            GL +V   + LHGG V + S
Sbjct: 1078 GLCLVRRLLELHGGTVDVRS 1097


>gi|283851135|ref|ZP_06368419.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573531|gb|EFC21507.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 886

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 111/243 (45%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    EA   A   K+ F+ ++S+ELR+PL  I G   LL  +    L  +Q +YV+   
Sbjct: 488 LRAAKEAAETASRAKSEFLANMSHELRTPLNGIQGMAQLLDGT---DLTVEQKEYVDAAL 544

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVIS 673
           AS   L  L+ DILDL+ V++G + L      L DL+  V  +      E  +  I  ++
Sbjct: 545 ASCRRLTRLLGDILDLSRVESGKLGLVSEPFRLADLIASVSAAFEPACREAGVAWITDVA 604

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARD---NGDFIFSVKNNGS 728
                +   D  R+ QI   +  NA+ F+  GS    +   +RD    G  +F+V + G 
Sbjct: 605 RDVPETLWGDEGRMRQILCNLAGNAVKFTRAGSVRLEVRAGSRDAAGRGSVLFTVADTGV 664

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+  + VF  F        RR  G GLGL+IV   + L GG V + S     T   C
Sbjct: 665 GIAEEDLERVFEAFHQVERSFSRRFQGAGLGLAIVRRLVGLMGGVVVLESEVGRGTECVC 724

Query: 787 RIP 789
            +P
Sbjct: 725 ALP 727


>gi|22086084|gb|AAM90591.1|AF398464_1 protein kinase PpoS [Marinomonas mediterranea MMB-1]
          Length = 939

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 130/228 (57%), Gaps = 13/228 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+   +++ +K+ F+ ++S+E+R+PL  I+G+  +L+  +L   + +Q  Y++ I+ S+T
Sbjct: 282 NKEATESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQL---DKQQRLYMDTIAQSTT 338

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKL 677
            LL +++DILD + ++AG + L+ + I + D+++EV Q +++    N  + + +I +  L
Sbjct: 339 NLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNASKELDLIPEFDL 398

Query: 678 GS---FVADRQRLLQIFSKILSNAMDFSSKGS---TV-ILKAARDNGDFIFSVKNNGSSI 730
                 + D  R+ Q+ + ++ NA+ F+ +GS   TV IL+ +  +    F + + G  I
Sbjct: 399 DVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKLSFQIIDTGVGI 458

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           PE+   ++F  F        R+  G GLGL I +  +   GG+V +SS
Sbjct: 459 PENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSS 506


>gi|302385605|ref|YP_003821427.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302196233|gb|ADL03804.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 377

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 126/239 (52%), Gaps = 5/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L+++    ++A++ K+  + ++++++R+PLT++IG+  LL  +    L  K ++YV  
Sbjct: 139 KTLSDRAYRAQEAEQRKSDLIMYLAHDIRTPLTSVIGYLSLLDEAPDMPLEQK-AKYVHI 197

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  L NLVN+  ++   ++  +KL    + L  +L ++       +      I V 
Sbjct: 198 TLEKAYRLENLVNEFFEITRYNSQQIKLEKQIVDLYYMLVQIADEFYPVLTPKANTIAVH 257

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  L ++  D  +L ++F+ IL NA+ +S   + + + A   N   + + +N G++IPE
Sbjct: 258 ADENLTAY-GDPTQLARVFNNILKNAVAYSDPHTEISISAGERNHQVVITFRNQGTTIPE 316

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   S+F +F  +  A      G GLGL+I +  I +H G + ++ S  G+T++   +P
Sbjct: 317 EELSSIFEKFYRLDKARASNTGGAGLGLAIAKEIITMHQGTI-MADSKGGITSLTVTLP 374


>gi|300855156|ref|YP_003780140.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300435271|gb|ADK15038.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 592

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 122/239 (51%), Gaps = 12/239 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASS 617
           ++K D +K  F  ++S+ELR+P+  I     +    LK     +  S + +Y++ +  + 
Sbjct: 326 IKKYDRMKTDFFANISHELRTPINLIFSAIQVYKLKLKECICENSCSDRYKYIKIMEQNC 385

Query: 618 TILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             LL LVN+++D+  +D+G   I ++NY+ +    L+ +   SIA  +    + I   +D
Sbjct: 386 YRLLRLVNNLIDITKIDSGYFNIDEVNYNIV---SLVEDTTLSIADYIKSKGLSIVFDTD 442

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D + + +I   +LSNA+ F+ +G  +++     N      VK+ G  IP++ 
Sbjct: 443 VEEKIIACDPEEIERILLNLLSNAIKFTPRGGNIMVNVEDGNKSISIKVKDTGKGIPKEK 502

Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             S+F RFV    +   +  G G+GLS+V++ + LHGG +S+ S +   +     IP K
Sbjct: 503 LNSIFERFVQVDKSLARENEGSGIGLSLVKALVELHGGTISVKSKEGYGSEFIIHIPCK 561


>gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 572

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 11/243 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L  K+EA  +A+  K+ F+  +S+ELR+P+  +IGF  LL  +++   + +Q+ +
Sbjct: 181 RTAAFLKAKDEA-EQANMAKSEFLAMMSHELRTPMNGVIGFASLLLETQM---DDEQTDF 236

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  S   LL+++NDILD + ++AG  +L   +  L + L EV         E  +++
Sbjct: 237 VETIRNSGDSLLSIINDILDFSKIEAGREELELVSFNLQNTLQEVISITTPIASEKELKL 296

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVK 724
            +     L  +V  D  +L Q+   ++SNA+ F+  G   I      N D       +V 
Sbjct: 297 DLEYSDALPEYVIGDPGKLRQVVLNLVSNAIKFTPDGGVTITATPNSNSDTHSMVRIAVS 356

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I +++ K +F+ F    ++ R +  G GLGL I +    + GG ++I SS    +
Sbjct: 357 DTGIGISKEVQKRLFHPFTQADSSTRRKHGGTGLGLVISKRLSEMMGGDITIDSSPGEGS 416

Query: 783 TIN 785
           T N
Sbjct: 417 TFN 419


>gi|189465235|ref|ZP_03014020.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
 gi|189437509|gb|EDV06494.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
          Length = 390

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 126/255 (49%), Gaps = 10/255 (3%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + PL +   +    +VT  V A R L        ++D +K++F+ ++S+E+R+PL  I+G
Sbjct: 136 VCPLGDKYLLCMCRDVTSRVNALRELAAARVKAEESDRLKSAFLSNMSHEIRTPLNAIVG 195

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+ L+     G    K+  Y   I  +S +LL L NDILDL+ +++G ++     + L  
Sbjct: 196 FSRLVIDP--GHEGDKED-YCNIIEKNSELLLCLFNDILDLSEMESGTLEFVREKVNLYH 252

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
              E   S   K+++  I I    D +L   + DR R++Q+   +LSNA  F+  G    
Sbjct: 253 ACLEEYDSHRLKVNKGVILILDDVDEEL-CVMGDRMRIMQVLMNLLSNAAKFTPTGEIHF 311

Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
               R  G+ + F VK+ G  IP +    +F RF    +  Q  G GLGL++    +   
Sbjct: 312 GYQLR--GNIVQFYVKDTGIGIPANRVAKIFERFGKINNFAQ--GTGLGLTVSRMLVERM 367

Query: 769 GGHVSISSSDEGVTT 783
           GG + + S  EG+ T
Sbjct: 368 GGRIWVRSG-EGIGT 381


>gi|170751185|ref|YP_001757445.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657707|gb|ACB26762.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 910

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 11/218 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+E+R+PL  +IGF  LL  S  G L+    +Y E  + +   L  +V+DIL
Sbjct: 407 KTEFLSAMSHEIRTPLNAVIGFAGLLAES--GRLDGDLRRYAELAATAGANLRTVVDDIL 464

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D ++V+AG + L+   + L  L++     +        + +    D  +    V D  RL
Sbjct: 465 DFSSVEAGAINLDPEPVALRPLVDACLGIVEAPARAKGLDLVAQIDAAVPDRLVCDPGRL 524

Query: 688 LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            QI   +L+NA+ F+ +G   +    + A   GD I FSV + G  I  D  + +F RF 
Sbjct: 525 RQILLNLLNNAVKFTPRGRVTVDLFHEEAGPRGDTIRFSVTDTGIGIAPDRQERLFQRF- 583

Query: 744 SNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778
           S A    RR   G GLGL+I    + L GG + + S++
Sbjct: 584 SQADSSIRRAYGGTGLGLAISRRLVELMGGTMGLVSAE 621


>gi|220908338|ref|YP_002483649.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864949|gb|ACL45288.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 800

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 9/230 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+RA  E   A R     K++F+ H+S+ELR+PL  ++GF  LL+   L  L+ +Q + +
Sbjct: 317 AQRARQEAEMANRA----KSAFLAHMSHELRTPLNVMLGFVQLLERDTL--LSDRQRESL 370

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+ S   LL L+ND+L+L+ ++AG ++L+ +   L   L  +++    ++    + + 
Sbjct: 371 QTINRSGEHLLGLINDVLELSRIEAGRVELHPTAFDLYRFLYTLQEMFQIRVQNKQLSLT 430

Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728
           +     L  + VAD  +L Q+   +L NA+ F+ +G  TV +          F V + G 
Sbjct: 431 LELAKDLPPYVVADEGKLRQVLINLLGNALKFTDRGGITVRVGYELIRERLAFVVVDTGR 490

Query: 729 SIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +     + +F  FV        + G GLGL+I   F+ L GG + ISS+
Sbjct: 491 GMATAELEQLFEPFVQGCTGLNPQEGTGLGLTISREFVRLMGGEIQISSA 540


>gi|218441451|ref|YP_002379780.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218174179|gb|ACK72912.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1060

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 26/233 (11%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            R+ +++K  F+  VS+ELR+PLT I G   LL      +   K  + +   +  +  L+ 
Sbjct: 809  RQIEQMKKDFISVVSHELRTPLTAIHGSLGLLAAGVYDNKPEKGKKMIHIAATQTDRLVR 868

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
            LVNDILDL  +++G ++L   +     L+ +  + +  K  EN + + VI    L  FV 
Sbjct: 869  LVNDILDLGRLESGNLQLVMKSCQTATLMQQAVEVMRPKAEENQVTLSVIP---LDVFVW 925

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------------------FIF 721
            AD   ++Q  + +LSNA+ FS   ST+++KA   + D                     +F
Sbjct: 926  ADFDAIIQTLTNLLSNAIKFSPPNSTIVVKAELMSIDDNIKVWQKKTPSLALLPSPYVLF 985

Query: 722  SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             V++ G  IP D    +F +F  +  +   ++ G GLGL+I  + I  H G +
Sbjct: 986  QVQDQGRGIPVDKLSLIFEKFQQIDTSDSREKGGTGLGLAICRTIIEQHKGQI 1038


>gi|149174846|ref|ZP_01853470.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846183|gb|EDL60522.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 788

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 133/235 (56%), Gaps = 10/235 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA  IK+SF+ ++S+E+R+P+T I+GF +++K     + + + S++++ I  +   LL L
Sbjct: 390 KASHIKSSFLANMSHEIRTPMTAILGFAEIMKQR---NDDPEMSRHIDTIRKNGEYLLEL 446

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +NDILD++ ++A  +++      L +LL++VK  +  +  +  + + V  DG +  ++ +
Sbjct: 447 INDILDVSKIEADKLEVEAIHCSLIELLDDVKTLMEIRAIDRGLDLSVKIDGSIPRWIQS 506

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI--FSVKNNGSSIPEDMCKSV 738
           D  RL QI   +LSNA+ F+ +G    ++  ++ D  + +  F V ++G  + ++    +
Sbjct: 507 DPVRLRQILINLLSNAIKFTRQGHVQLIVTASSIDTNEPVIQFDVIDSGIGMTDEQISRL 566

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  F+       R+  G GLGL+I +   ++ GG +S++S     TT +  + +K
Sbjct: 567 FQPFMQADSSTTRQYGGTGLGLTICKRLTHILGGEISVNSEYGNGTTFSVTVKTK 621


>gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
 gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
          Length = 1052

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           +VT     E  L +      +A E+K+ F+ ++S+E+R+P+  IIG + L LKT     L
Sbjct: 278 DVTSRKAVEDELNQARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTE----L 333

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ  Y+  I  S+++LL ++NDILD + ++AG + +      L+D+L+ V      K 
Sbjct: 334 TPKQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIETIEFHLDDVLHNVSMVTGQKA 393

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            E  + +    D  +   +  D  RL QI   +++NA+ F+ +G   +      + D   
Sbjct: 394 FEKGLELIFQIDRDVPKVLYGDPLRLGQIIINLVNNAVKFTEQGEITVHVTRTPHSDQKV 453

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              FSV++ G  +  +    +F+ F        RR  G GLGLSI    + L GG + + 
Sbjct: 454 ELKFSVQDTGIGMSPEQSDKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGSIQVE 513

Query: 776 S 776
           S
Sbjct: 514 S 514


>gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 547

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 139/255 (54%), Gaps = 16/255 (6%)

Query: 547 DSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +S  AER   L   N+ L +  + K  F+ ++S+ELR+PLT I+ FT+ L T  +G LN+
Sbjct: 289 ESKVAERTAELAAANKELAEISQYKTEFLANMSHELRTPLTAILAFTEELLTKSMGQLNA 348

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +Y++ I  S   LLNL+ND+LDL+ +++G M LN + + + + +  V++ +     +
Sbjct: 349 EQEEYLKDIRDSGRQLLNLINDLLDLSKIESGKMALNLTEVNVGEAVRGVEKLLRPLAQQ 408

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIF 721
            NI ++    G     +AD +++ Q+   +L NA+ F+  G  +   +    R +   + 
Sbjct: 409 KNIDMQSAITGT-NVIIADEEKVRQVIRNLLGNAIKFTPAGGRIELYVRDTDRPDEGVLL 467

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSIS 775
           +VK++G  IP      +F+ F    ++G R       G GLGL++V+  + +H G +++ 
Sbjct: 468 TVKDSGPGIPAKDRARIFDSF----YQGHRGRNKEYGGTGLGLALVKRIVEMHLGEITLE 523

Query: 776 SSDEGVTTINCRIPS 790
           S++   +     +P+
Sbjct: 524 STEGQGSAFTVYLPA 538


>gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1438

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 125/254 (49%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L E+ + L  A   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 852  QARQELEERAQQLSLASTYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTVKQVEY 911

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M LN     L  LL+ V+ +      + ++  
Sbjct: 912  AGIIHSAGSDLLQLINDILDLSKVEAGKMDLNPERFTLRQLLDYVEATFRPMTTQKSLTF 971

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAA---------RDNG 717
             +  + G     + D  RL Q+   ++SNA+ F+ +GS    I  AA         R  G
Sbjct: 972  TISTAPGVPVDLLTDDSRLRQVLRNLISNAVKFTERGSVELRIEPAADHELPDSVHRGGG 1031

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F VK+ G  I E   +++F  F        R+  G GLGLSI     +L GG ++  
Sbjct: 1032 VVAFRVKDTGIGIAEQQLETIFGAFQQADGTTSRKYGGTGLGLSISREIAHLLGGALTAR 1091

Query: 776  SSDEGVTTINCRIP 789
            S+    +T    +P
Sbjct: 1092 STPGRGSTFTLYLP 1105


>gi|218438944|ref|YP_002377273.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218171672|gb|ACK70405.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 633

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 28/227 (12%)

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI------LLNLV 624
           +F+  +S+ELR+PL  I+G + LL        +++++ Y+++I     I      LL L+
Sbjct: 391 AFLASMSHELRTPLNGILGLSQLLLE------DAQEAGYLDFIEDLQQINQSGLHLLGLI 444

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            DILD++ ++AG M L   T  ++ L+ EV  +I   + +N   +++     LG  VADR
Sbjct: 445 EDILDISKIEAGKMILYPETFDVSLLITEVVNTIQPLIKKNGNSLQIKFSNPLGPMVADR 504

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNNGSSIP 731
           +R+ QI   +LSNA  F+ +G  ++L   R   +              +FSV + G  + 
Sbjct: 505 KRVKQILINLLSNAAKFTEQGK-ILLTVNRQVFNETPQPSINSPSTWLVFSVIDTGIGMT 563

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++    +F  FV       ++  G GLGLSI + F  + GG++++ S
Sbjct: 564 QEQISKIFQPFVQADSSTTKKYGGTGLGLSICQRFCEMMGGYITVES 610


>gi|213025313|ref|ZP_03339760.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 517

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 133/259 (51%), Gaps = 15/259 (5%)

Query: 546 TDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            D +RA+ R L++  EA  KA  I++ F+ ++S+E+R+P+  ++G  +LL  ++LG    
Sbjct: 174 ADLLRAQARELSKAREAAEKAAAIRSEFLANMSHEIRTPMNGVVGMAELLGHTELG---E 230

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +YV+ I  S   LL L+N+ILDL+ ++AG M L+        +L +    +  K  E
Sbjct: 231 EQREYVDTIRNSGEALLGLINNILDLSKLEAGKMILDAIEFDPRSVLEDTVDLLGAKADE 290

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDF 719
             I +   ++ ++ S  + D  RL Q+   ++ NA+ F++ G+      ++  +      
Sbjct: 291 KLIELTGFAESQVPSKLIGDPSRLRQVLLNLVGNALKFTANGTVRLRVTLMNTSSSEAVL 350

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            FSV++ G  I E+  K +F  F        R+  G GLGLSI +      GG + + S 
Sbjct: 351 RFSVRDTGVGIDEEQQKRLFKPFSQAEGAVARKYGGTGLGLSISQQIARAMGGQILLESE 410

Query: 778 -DEGVT---TINCRIPSKE 792
            D+G      +  ++P K+
Sbjct: 411 RDKGSEFSFALRFKLPEKD 429


>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 866

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 163/345 (47%), Gaps = 27/345 (7%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR-YYNESDGWDLFAAII 504
           G+ V   +G I+L NPA   ++      L+P     N+       Y++E D + L   + 
Sbjct: 212 GIVVIDSNGIIELFNPAAEEMF----GYLAPEVIGYNVNRLMPEPYHSEHDQY-LNNYLT 266

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT------MLTFV----NVTDSVRAERA 554
           TS   +RK +    E+++    + S  P+  A +       L FV    ++T+   AE A
Sbjct: 267 TS---QRKIIGIGREVVAKRK-DGSFFPIELAVSEMYEGNALKFVGRIIDITERKAAEFA 322

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E   +++ +K+ F+  +S+ELR+PLT ++G   LL          + +     I 
Sbjct: 323 LIKAKEQAEESNRLKSEFLNVISHELRTPLTIMLGNLPLLTDPNDLPDAEEIADIATDIE 382

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S   LL L+ND+LDL+ ++AG M +    + +  L  +V  SI    HE N+ I+  I 
Sbjct: 383 DSGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAALTQDVITSIQVMAHEKNLTIETEID 442

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D ++    AD  RL QI   +L NA+ F+  G  + +K         F V++ G  I E 
Sbjct: 443 DIEV---FADPIRLKQILLNLLGNAIKFTENG-FIKVKIKPMAHQVCFFVEDCGCGIDEK 498

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F+ F  +     RR  G GLGL+I +  + LH G +S+ S
Sbjct: 499 DVPFIFDAFRQSDSSAARRADGTGLGLAITKKLVELHNGKISVQS 543


>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1245

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 14/236 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
           L    ++ + AD+ K+ F+ ++S+E+R+P+  +IG   L LKT     ++ KQ  Y+   
Sbjct: 577 LEAARDSAQAADQAKSEFLANMSHEIRTPMNAVIGMIHLTLKTE----MSPKQRDYLRKA 632

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             ++  LL +++DILD + V+AG ++L     +L+++L+ V   +  K HE  +   + I
Sbjct: 633 GFAADSLLGIIDDILDFSKVEAGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGLEFLLKI 692

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFI--FSVKNNG 727
           +       + D  RL QI   + +NA+ F+ +G   +       R+N   +  FSV++NG
Sbjct: 693 APEVPAQLIGDPLRLGQILINLCNNAVKFTGQGEIFVFIEQLDCRENNRVMLRFSVRDNG 752

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEG 780
             +  +    +F  F        RR  G GLGL+I +  + L GG +   S  D+G
Sbjct: 753 IGMTPEQLDKLFTPFTQADASSTRRFGGTGLGLAISKQLVLLMGGEIGAESIPDKG 808


>gi|39656317|gb|AAR29881.1| putative histidine kinase HHK2p [Cochliobolus heterostrophus]
          Length = 2013

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 24/235 (10%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + L++  + K+ F+ ++S+E+R+PL  I G  + L  S    LN++Q ++V  I AS+  
Sbjct: 1283 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNTEQLEHVNIIKASTDS 1339

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-----SIATKMHENNIRIKVISD 674
            LLNL+NDILDL+ V+AG++KL+   + L  LL EV       +I   +  N +    + +
Sbjct: 1340 LLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYL----VDE 1395

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDFI-FSVK 724
            G       D+ R+ Q+   ++ NA+ F+  G   I          +  ++N   I F V 
Sbjct: 1396 GVPAEVKGDKFRIRQVLLNVVGNAIKFTEHGEIFIRCKLQPSDRSRPLKENETMIRFEVV 1455

Query: 725  NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + G    +   K +F RF  +  +   Q  G GLGL+I   F+ LHGG +   S+
Sbjct: 1456 DTGQGFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSA 1510


>gi|53725083|ref|YP_102612.1| sensor histidine kinase/response regulator [Burkholderia mallei
           ATCC 23344]
 gi|121601132|ref|YP_992734.1| sensor histidine kinase/response regulator [Burkholderia mallei
           SAVP1]
 gi|126450386|ref|YP_001080251.1| sensor histidine kinase/response regulator [Burkholderia mallei
           NCTC 10247]
 gi|254199546|ref|ZP_04905912.1| sensor histidine kinase/response regulator [Burkholderia mallei
           FMH]
 gi|52428506|gb|AAU49099.1| sensor histidine kinase/response regulator [Burkholderia mallei
           ATCC 23344]
 gi|121229942|gb|ABM52460.1| sensor histidine kinase/response regulator [Burkholderia mallei
           SAVP1]
 gi|126243256|gb|ABO06349.1| sensor histidine kinase/response regulator [Burkholderia mallei
           NCTC 10247]
 gi|147749142|gb|EDK56216.1| sensor histidine kinase/response regulator [Burkholderia mallei
           FMH]
          Length = 654

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 32  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 84

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 85  GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 144

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 145 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 204

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 205 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 263

Query: 783 TINCRI 788
           T   RI
Sbjct: 264 TATARI 269


>gi|78356740|ref|YP_388189.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219145|gb|ABB38494.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 907

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 131/263 (49%), Gaps = 12/263 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLK 595
           Q  L    + + ++AE AL E  E   +AD+ K  F+ ++S+E R+P+  IIG ++ +LK
Sbjct: 348 QNALLNAEIEERIKAEHALREAKELAEEADKAKGEFLANISHEFRTPMNAIIGMSEVILK 407

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T     L++ Q  ++  ++ ++  LL+L+N ILD +  ++G   L  S  +L+    +V 
Sbjct: 408 T----ELSAPQRNHLTVLNKAAHSLLDLLNTILDFSRYESGKATLALSPFMLHAPFTQVH 463

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----L 710
           +   +      + +++ ++     +   D  ++ QI   ++SNA+ F+  G+  I     
Sbjct: 464 EMFLSAAAAKGLPLQLELAPDMPRAVEGDEGKIRQILVNLVSNALKFTDTGNITITCKAF 523

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
            A     D  FSV + G  I ++   ++F+ F     ++     G GLGLSI +   ++ 
Sbjct: 524 PAPSGRADICFSVSDTGIGIEKEKHSAIFDSFTQADGSYTRTYGGTGLGLSICKLLADMM 583

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +++ S+    +T    +P K
Sbjct: 584 GGSITVRSAPRQGSTFTVCLPLK 606


>gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1]
 gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1]
          Length = 1044

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 117/239 (48%), Gaps = 5/239 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V++TD  RA+  + +  +      E K+ F+  VS+E+R+P+  ++G  DLL+ +   
Sbjct: 516 VMVDITDVYRAKEEVQKARDLAVSTAENKSRFLAIVSHEIRTPMNGLLGMLDLLRENN-- 573

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q   ++    S   LL+LV+D++D   ++AG M+ +Y    +++LLN     +A 
Sbjct: 574 GLNDEQKDTLQVAWQSGRNLLSLVDDVMDFNRIEAGEMQFHYERTNIHELLNAALTMVAA 633

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             ++  + + ++ +  L   V  D  ++ +I + +LSNA+ F+  GS ++          
Sbjct: 634 DAYKRGLDVGLVLESNLPELVVCDAVKVRRILANLLSNAVKFTQHGSVLLWAEMLPGNRL 693

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              VK+ G  I     + +F  FV       RR  G GLGL + +  +    G + + S
Sbjct: 694 YVEVKDTGVGIGAQEQQQLFQAFVLGDSSSTRRHGGSGLGLVLAQRILEAMNGRIGVKS 752


>gi|153954881|ref|YP_001395646.1| sensory transduction histidine kinase [Clostridium kluyveri DSM
           555]
 gi|146347739|gb|EDK34275.1| Predicted sensory transduction histidine kinase [Clostridium
           kluyveri DSM 555]
          Length = 663

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 129/246 (52%), Gaps = 13/246 (5%)

Query: 555 LTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYV 610
           L+ + EA +   + + ++++ ++ VS++LRSPL  I G  + +L+       N+K+   +
Sbjct: 415 LSSQQEASKVQIERERLRSNLLRSVSHDLRSPLAGIKGSVSTILENGAFIDENTKKDLLI 474

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIR 668
             I   +  L+ LV ++L +   D G + +  +  ++ ++++E  Q  S   K H    R
Sbjct: 475 G-IYNDTEWLIRLVENLLSMTRFDEGNVNIAKNMELVEEVVSEAVQRSSKCFKYH----R 529

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +KV    K+     D   + Q+   +  NA+ FS K S V +K   ++ D IF V +NG+
Sbjct: 530 VKVNIPEKIIMVSMDGSLIEQVLINLFDNAVKFSPKHSLVEIKVYEESEDVIFEVADNGN 589

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE +   +F+RF +N  +    RRGVGLGL+I +S + LHGG ++  +  EG      
Sbjct: 590 GIPEKILPYIFDRFFTNGSKVSDSRRGVGLGLAICKSIVELHGGKITAYNKKEGGAVFKF 649

Query: 787 RIPSKE 792
            IP ++
Sbjct: 650 NIPKEK 655


>gi|126730029|ref|ZP_01745841.1| sensory box sensor histidine kinase/response regulator [Sagittula
           stellata E-37]
 gi|126709409|gb|EBA08463.1| sensory box sensor histidine kinase/response regulator [Sagittula
           stellata E-37]
          Length = 653

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 9/216 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+PL  +IG +DLL  + L   ++K ++YV  I  +ST LL ++ND+LD +
Sbjct: 245 FLATMSHEIRTPLNAVIGMSDLLAANDL---DAKSAEYVRTIRGASTSLLQVINDVLDFS 301

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
            +DA  M         ++ +    + +     E  + I +  DG L     AD  RL QI
Sbjct: 302 RLDADQMSFESLPFAPSESIAAAARLLTPLASEKGLPIVLADDGSLPLRASADEGRLRQI 361

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
              ++ NA+ F++ G   +   A   GD    +  V + G  +P +  +++F  F     
Sbjct: 362 LVNLIGNAIKFTAAGEIRVTARAEPEGDGWRLVVLVSDTGIGVPPNRAEAIFEVFQQADA 421

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
              RR  G GLGL I  +     GG + +  +  GV
Sbjct: 422 ATTRRYGGTGLGLPISRALAQRLGGDLRLVPAQRGV 457


>gi|300723733|ref|YP_003713040.1| hybrid sensory histidine kinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297630257|emb|CBJ90908.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus nematophila
           ATCC 19061]
          Length = 930

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 134/251 (53%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            ++V+  V+ E++L E   A  +A++ K+ F+  VS+ELR+PL  IIG  +L+++  L  
Sbjct: 422 LIDVSTRVKMEKSLQEMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELIQSHLLP- 480

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              + ++ +  ++ SS++LL +++DILD + +++  +K+        ++++ V  +    
Sbjct: 481 --PESTRLLATMNNSSSLLLKIISDILDFSKIESKQLKIEPKDFSCKEVISHVISNYLPL 538

Query: 662 MHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    +  + + +  D  RL QI S +L+NA+ F++ G  V+++    +G   
Sbjct: 539 IAKKALGLYCYIEPNVPNIIRNDPVRLQQIISNLLNNAIKFTASG-CVVIEIVSKHGYLY 597

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           FS+K+ G  I + +   +F  F  +S       +G GLGL+I E  INL  G +   S  
Sbjct: 598 FSIKDTGLGIEDKLQFQLFEPFFQISANKESSPQGTGLGLAICEKLINLMDGDIEFISQK 657

Query: 779 EGVTTINCRIP 789
              +  + RIP
Sbjct: 658 YVGSIFSIRIP 668


>gi|166712853|ref|ZP_02244060.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzicola BLS256]
          Length = 1182

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+  Q  Y E I  + 
Sbjct: 801  KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYTESIRRAG 857

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL LVND LDLA +++G ++L+     +  L+ EVK  +A    E  +R   +  G L
Sbjct: 858  AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVKALMAPLAQERGLRFS-LEIGLL 916

Query: 678  GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
            G   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  + 
Sbjct: 917  GDITASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 976

Query: 735  CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F RF   +  R   R  G GLGL+I +      GGH+ + S
Sbjct: 977  KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1021


>gi|94264477|ref|ZP_01288265.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
 gi|93455108|gb|EAT05332.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
          Length = 876

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 35/268 (13%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L +    K+ F+  +S+E+R+PL  IIGF++L     L   +    QY+E I 
Sbjct: 446 LLTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNL----ALEGGSQPPRQYLEMIK 501

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L+N ILDLA +++G ++L        + + +  +  A    +  +      D
Sbjct: 502 TAGDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSID 561

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD-------------- 718
             + G  V D  RL Q+   ++ NA+ F+ +G   + ++ A D+ D              
Sbjct: 562 PAVPGEVVGDPARLTQVLVNLVGNALKFTEEGEIAVSVRPAADDADRRPTVGAGRAEVAP 621

Query: 719 ----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV-GLGLSIVESFINL 767
                       F+V+++GS I  +    +FNRF          G  GLGL+I  S + L
Sbjct: 622 PAASDATSGLLHFTVRDSGSGIAAEQQGRIFNRFAQGEGAASPHGGHGLGLAIAASLVEL 681

Query: 768 HGGHVSISS-SDEGVT---TINCRIPSK 791
            GG + + S   EG +   TI  R+P  
Sbjct: 682 MGGEIWLESRPGEGSSFHFTIAYRLPPP 709


>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1817

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 14/234 (5%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            AL +   A   A+  K+ F+  +S+E+R+P+  +IG T LL  ++L    S+Q  +VE +
Sbjct: 1125 ALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTEL---TSQQRDFVETV 1181

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S   LL+++NDILD + +++G ++L      +   + +V   +A K  + +I +  + 
Sbjct: 1182 LTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLI 1241

Query: 674  DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARDNGDFIFSVK 724
              ++   +A D  RL QI + +L+NA+ F+ +G  V+         +  ++  + IF++K
Sbjct: 1242 HPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKNKNCCEIIFTIK 1301

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + G  I  +    +F  FV       R+  G GLGL I +    + GG++ + S
Sbjct: 1302 DTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVES 1355


>gi|291560209|emb|CBL39009.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 751

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 125/240 (52%), Gaps = 11/240 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  +A+RA  +  E    A + K+ F+  +S+++R+P+  I+G T L++         K
Sbjct: 347 TELTQAKRAAEQAFEVANNASQSKSDFLASMSHDIRTPMNAIMGITSLIRHD--AGNKDK 404

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +YV+ I  S+  LL ++ND+LD++ ++AG    +YS   + + + E++     +  E 
Sbjct: 405 VIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQTMFCPQTEEK 464

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGD 718
           +  + +  +  +  +V +D   L+QIFS +LSNA+ ++ KG  +          +     
Sbjct: 465 HQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEECETKSSAYAK 524

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + F+V +NG  + ED    +F+ F    ++   + +G GLG++I ++ I   GG + + S
Sbjct: 525 YHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIEAMGGTIDVDS 584


>gi|289620411|emb|CBI53269.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 2114

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 21/224 (9%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1420 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1476

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKLNY       L+ +V + ++T      + +  + +  + ++V
Sbjct: 1477 MIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1536

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFI-------FSVKNNGS 728
              D+ R+ Q+   ++ NA+ F+++G       V++    D+G          FS+ + G 
Sbjct: 1537 KGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKVVVP---DDGPLHENEIMLEFSIIDTGR 1593

Query: 729  SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
               ++  + +F  F  +  +   Q  G GLGL I    + LHGG
Sbjct: 1594 GFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1637


>gi|262195026|ref|YP_003266235.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078373|gb|ACY14342.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 965

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 134/243 (55%), Gaps = 12/243 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  ++ERAL+  ++    A   K  F+ ++S+E+R+PL+ IIG T LL+T++   L+
Sbjct: 446 DITDWKQSERALSLAHQQAEAARLAKTEFLANISHEVRTPLSGIIGMTSLLRTTE---LD 502

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q+ YV  + AS + LLNL+ND+LD++ ++AG + L+     L   +            
Sbjct: 503 AEQADYVATVEASGSTLLNLINDLLDISRLEAGRIALDEQMFELMPCVTHTVNLARPMAR 562

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNG 717
           E  + + + I++G     + D  RL Q+ S +++NA+ F+ +G  V++K +      D  
Sbjct: 563 EKGLALDLDIAEGVPAFVLGDELRLSQVLSNLVTNALKFTEQGR-VLVKVSPCGYEDDRI 621

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F+V + G  IPED  + +F RF        RR  G GLGL+I +  +N  GG + + 
Sbjct: 622 RLRFAVHDTGIGIPEDKREVLFERFTQVDTSTTRRYGGAGLGLAISQHLVNAMGGRIELQ 681

Query: 776 SSD 778
           S +
Sbjct: 682 SRE 684


>gi|304317396|ref|YP_003852541.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778898|gb|ADL69457.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 607

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 129/258 (50%), Gaps = 21/258 (8%)

Query: 522 SDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           S+   + +I P+ N ++     +L F N+T+               ++ D++K+ F+  +
Sbjct: 344 SNKYYDVTISPIENYKSEISDILLVFHNITE--------------FKELDQVKDDFISII 389

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E ++PLT+I+  T ++   K+G++N KQ   +  I      L  LVN++++L  +++G
Sbjct: 390 SHEFKTPLTSIMMGTSIILEEKIGTINEKQKSTLLAIEEEGEKLTELVNELIELTKIESG 449

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
               N+    +  ++    + +     +  + +    D  L    AD +++  + + +++
Sbjct: 450 KEVYNFKCCSMFGIVENTIKPLYNIASDKGVNLSHSVDEDLPCVYADPEKISWVLNNLIT 509

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           NA+ ++  G  + + A+ DN     SVK+ G  IP++    +F++F    N    + +G 
Sbjct: 510 NALKYTDAGDDISISASIDNNMMQISVKDTGVGIPKEYKDKIFDKFFHTKNGDDFEIKGT 569

Query: 755 GLGLSIVESFINLHGGHV 772
           GLGL++V+  +  HGG V
Sbjct: 570 GLGLAVVKEIVEAHGGKV 587


>gi|228946855|ref|ZP_04109157.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812842|gb|EEM59161.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 448

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I I+   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDIARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|18252319|gb|AAL66191.1|AF386509_1 putative ethylene receptor [Pyrus communis]
          Length = 741

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ +  
Sbjct: 315 ESMRARDLLMEQNIALDLASREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
             L  +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+ +T  L+ +  EV   I 
Sbjct: 373 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSIFREVHNMIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
               +   ++ + + +D  + + + D +RL+QI   ++ NA+ FS +GS  I       +
Sbjct: 432 PVASIKRLSVALNIAADLPVYA-IGDEKRLMQIILNVVGNAVKFSKEGSISITAYVAKSE 490

Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + RD    DF              VK++GS I P+D+  ++F +F        +   G G
Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDI-PNLFTKFTQTQTLASQNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574


>gi|42782325|ref|NP_979572.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42738250|gb|AAS42180.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 458

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSM--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++  + D  + 
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDIVIK 347

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +
Sbjct: 348 ---GDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRI 404

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 405 FDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|260063627|ref|YP_003196707.1| hybrid sensory kinase [Robiginitalea biformata HTCC2501]
 gi|88783072|gb|EAR14245.1| hybrid sensory kinase [Robiginitalea biformata HTCC2501]
          Length = 734

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 10/232 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    +A  +A E K +F+  VS+ELR+PL  + G T LL      + + +Q ++++ 
Sbjct: 344 RELHAARDAAVQAMEAKTNFLSTVSHELRTPLYAVTGLTHLLLEE---NPSKEQQEHLKA 400

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LLN +NDIL +  +DA  +++      L  +L EV  S+     E+   + + 
Sbjct: 401 LKFSGDYLLNFINDILQINKIDADKLEMLEIEFNLKKILTEVMNSLQQTAKESKTEMILD 460

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNG 727
            D ++ S  ++D  +L Q+F  ++ NA+ F+  G  ++L    +   D     F V++ G
Sbjct: 461 FDPEIPSHLMSDPVKLSQVFMNLMGNALKFTKNGEVLVLARLVRKEDDRARVYFEVRDTG 520

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             I E+  K++F+ F   + +  R   G GLGL+IV+S + L G  + + S+
Sbjct: 521 IGISEEKQKTIFDSFEQGSIQINREYGGTGLGLTIVKSLLGLFGSTIQLEST 572


>gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 1054

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 13/226 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E + +A++ K+ F+ ++S+E+R+PL  I+GFT LLK +    L+  Q +++  I  SS  
Sbjct: 371 ETIVEANKAKDLFLANMSHEIRTPLNGIVGFTQLLKNT---PLSPDQQEFISVIENSSDN 427

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LL++VNDILDL+ ++A  ++L        +   +  +S   K  E NI   +  D  +  
Sbjct: 428 LLSIVNDILDLSKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIPK 487

Query: 679 SFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGD----FIFSVKNNGSSIPED 733
           + V D  ++ Q+   ++SNA+ F+ S G   +L    +  D      F+V++ G  I E+
Sbjct: 488 TLVGDPTKISQVIVNLVSNAIKFTNSNGDVEVLIEKTNETDKDATIYFAVRDTGIGITEE 547

Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
               +F  F S A  G  R   G GLGL+I    +   GG + I S
Sbjct: 548 QKAKIFGAF-SQADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIES 592


>gi|317027783|ref|XP_001399984.2| sensor histidine kinase/response regulator [Aspergillus niger CBS
            513.88]
          Length = 2354

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 31/260 (11%)

Query: 552  ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL +  EA +KA                  + K+ F+ ++S++LR+P+  +IG ++LL
Sbjct: 1872 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1931

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +KL   + +Q +YVE I   +  LL L+NDILD + ++AG MK++   + + + ++EV
Sbjct: 1932 KGTKL---DREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEV 1988

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
             +++     +  +      D      V   D  RL QIF  +LSN+  F+ KGS TV  K
Sbjct: 1989 VRALRYTHRDRGLETIEDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAK 2048

Query: 712  AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
             +R+    +    SV + G  I E+    +F  F S A     R   G GLGLSI ++ I
Sbjct: 2049 VSREGKGRVRLECSVSDTGIGISEEQKSRLFRPF-SQADNSTARSYGGSGLGLSICKAII 2107

Query: 766  -NLHGGHVSISSSDEGVTTI 784
             ++ GG + + S+    TT+
Sbjct: 2108 EDVLGGAIWLDSTSGVGTTV 2127


>gi|160888865|ref|ZP_02069868.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
 gi|156861764|gb|EDO55195.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
          Length = 623

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 15/252 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   +AD +K++F+ ++S+E+R+PL  IIGF+ LL   +     
Sbjct: 379 DITQLKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLLHYVE---NE 435

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  I+ ++ +LL L+ND+LDL+ ++AG ++L+       +L+ E     +   +
Sbjct: 436 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEE-----SITEY 490

Query: 664 ENNIR--IKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           E N+   +K+ +      G    D  R+ QI +  +SNA+  + +G   +      +G  
Sbjct: 491 ERNVPAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGHIEVYYETDTDGIR 550

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           I SV + G  IP D    +F RF       Q  G GLGLSI +S +    G +++ S+  
Sbjct: 551 I-SVSDTGCGIPPDKLGMIFERFEKVDSFAQ--GAGLGLSICKSIVEKMNGVITVDSTMG 607

Query: 780 GVTTINCRIPSK 791
             +T    +P +
Sbjct: 608 VGSTFTVELPCR 619


>gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
          Length = 1328

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 12/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+  + E  L E  +        K  F+ ++S+E+R+P+  I+G   L   ++L  
Sbjct: 580 LLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL-- 637

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  Q +Y+  I+ S+  LL ++NDILD + ++AG + +      L+++   +   I+ K
Sbjct: 638 -DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDN 716
             E  I   +  D ++    V D  RL Q+   +  NA+ F+ KG  ++       + D+
Sbjct: 697 AQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSVMPESQSSDD 756

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
               FSVK+ G  I ++    +FN F S A     R   G GLGLSI +  + L GG +S
Sbjct: 757 VTLRFSVKDTGIGIDKEKIADLFNAF-SQADTSITREFGGTGLGLSISKQLVELMGGQLS 815

Query: 774 ISSS 777
           +SS+
Sbjct: 816 VSSA 819


>gi|324113624|gb|EGC07599.1| TMAO reductase sytem sensor TorS [Escherichia fergusonii B253]
          Length = 902

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IILRSRTDGEQWLLEVEDSGCGIDPAKLTEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|258592063|emb|CBE68368.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 316

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 24/257 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +    EA R+    K++F+ ++S+ELR+PL++IIGFT+LL++   G+LN KQ+ +V  
Sbjct: 62  RGIERAEEATRQ----KSAFLANISHELRTPLSSIIGFTELLQSGAFGTLNEKQAHFVGN 117

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  SS  LL L+ND+LDL+ ++AG + +     VL +++     ++  +  + +  I+V 
Sbjct: 118 ILLSSRHLLTLLNDLLDLSKIEAGKLIIEPEPFVLQEVIETTVGTLRPQADQKHQNIEVT 177

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------------ARDNG 717
            +  +    AD  R  QI   +LSNA+ FS KG  +++ +                R +G
Sbjct: 178 VEDGISLINADPTRFKQILYNLLSNAIKFSHKGGRILVTSRVVPSVLLTTEHTGPERTSG 237

Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             I   +V + G  I  +    +F RF  +        +G GLGL++ +  + LHGG + 
Sbjct: 238 KKIVEITVADTGIGISAEDLSKLFQRFTQLQAPTVKHYQGTGLGLALTKYLVELHGGSIH 297

Query: 774 ISSSDEGV-TTINCRIP 789
             S  EG   T   R+P
Sbjct: 298 AHSDGEGRGATFAVRLP 314


>gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 685

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 15/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           ++TD +R      EK  A+  A + K  F+ H+S+E+R+PL  IIG T L L++   G L
Sbjct: 290 DITDILRTRH---EKQSAV-IASQAKTEFLAHMSHEIRTPLNGIIGLTHLALQSGPDGEL 345

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                +Y+  I +SST LL ++ND+LDL+ ++A  M+L     ++ ++L+ V  S+   M
Sbjct: 346 K----EYLLKIRSSSTNLLAIINDVLDLSKIEANKMELENVNFMVEEVLDFVHTSVRFAM 401

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDF 719
            +  +  +  + D        D  RL Q+   ++SNA+ F+++G     I +   D+GD+
Sbjct: 402 EQKGLEYQCHLDDDVPLKLWGDSLRLKQVLLNLMSNAVKFTARGKVGLRIHRQQDDDGDW 461

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + F V + G  I  +  + +F+ +        RR  G GLGLSI +    L  G +   S
Sbjct: 462 LHFEVSDTGMGISHEYQQHLFDPYTQANSSISRRFGGTGLGLSICKRIAELMQGSLWCES 521

Query: 777 SDEGVTTINCRIP 789
                +  + RIP
Sbjct: 522 RLGEGSRFHLRIP 534


>gi|254412023|ref|ZP_05025798.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180989|gb|EDX75978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 426

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 125/245 (51%), Gaps = 18/245 (7%)

Query: 557 EKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           ++ EALR+         E+K+ F+  VS+E R+PLT I+  +++L+         +++ +
Sbjct: 180 QQAEALRQELAEQHELSELKSRFLSTVSHEFRTPLTTILSSSEMLERYSDRLSPERKAVH 239

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-----E 664
            + IS S   +  L+ DIL  +  DA   KL ++  V+N  L+E  Q++   +H     +
Sbjct: 240 FQKISQSVDYMTQLLEDILIYSKADAE--KLEFNPTVVN--LSEFCQTLVEDLHLEAANK 295

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             I++K   D   G+F  D + L QI S +L+NA+ +S KG  V  +  R+    I  ++
Sbjct: 296 ERIQLKCNDDDICGNF--DPKLLRQILSNLLTNALKYSPKGDPVDFELNREENQAILLIR 353

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP +    +F  F    + G   G GLGL+IV+  ++LH G +S+ S  +  T  
Sbjct: 354 DRGIGIPANDQVHLFEPFHRAQNTGTINGTGLGLAIVKKAVDLHQGMISVQSEIDVGTIF 413

Query: 785 NCRIP 789
              +P
Sbjct: 414 TVNLP 418


>gi|149190795|ref|ZP_01869060.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1]
 gi|148835357|gb|EDL52329.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1]
          Length = 568

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    ++     F+  +++ELR+PL  ++G  +LL  +    L   Q +    +S
Sbjct: 186 LVKSKERAEASERSTREFLAMINHELRTPLNGLLGSVELLADT---DLKGAQQELHSNLS 242

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S  +L +++ND+LD + +DAG+++L  ST    +L + +      K  E  I   + +D
Sbjct: 243 QSGQLLRSIINDLLDFSKIDAGMLELIESTFKWTNLQSTLCSIFEHKAAEKQIGFTICAD 302

Query: 675 G-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           G    +F  D +R+ QIF  ++ NA+ F+ +GS  +   +++ G   FSV + G  I + 
Sbjct: 303 GFSNKNFKGDLERITQIFVNLIGNAIKFTDEGSVKVTLTSQEGG-IGFSVTDTGIGISQT 361

Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             K +F  F+  A R   R   G GLGL+I +  + L GG +S++S     TT    +P
Sbjct: 362 AQKKLFQPFI-QADRSSSRNYEGTGLGLAICKRLVELMGGSISLTSELGQGTTFYGFLP 419


>gi|302768056|ref|XP_002967448.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii]
 gi|300165439|gb|EFJ32047.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii]
          Length = 628

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD+ K+ F+ ++S+E+R+PL  II  T+L   ++    +++Q +Y+E +  S+  LL ++
Sbjct: 9   ADKAKSEFLANMSHEIRTPLNGIINCTELCLDTQT---STEQQEYLELVRFSAKHLLRII 65

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            DILD + ++AG +++      L D L      +A + H+ N+ +   +D  +    V D
Sbjct: 66  TDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARAHKKNLELAWSADADVPDQIVGD 125

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+F  ++ N + F+  G  V+L       ++  + +FSV + G  IP++    +F
Sbjct: 126 PGRLFQVFVNLIGNGIKFTEDGEVVVLAKLQNKTKETVELLFSVNDTGVGIPKNKQSLLF 185

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             F  V ++      G GLGL I        GG + + S  +G T
Sbjct: 186 QAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGRMWVESEGQGST 230


>gi|220923690|ref|YP_002498992.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219948297|gb|ACL58689.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 737

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 10/217 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+E+R+PL  IIG+TD+L       L  +Q + +E I  +   LL +VNDIL
Sbjct: 247 KTDFLASMSHEIRTPLNGIIGYTDVLLDQ---DLKPEQRRLLERIQFAGAALLTVVNDIL 303

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           D + ++AG + L      L  L++     IA       + + V  D  +  + + D  RL
Sbjct: 304 DFSKIEAGQVALEPRPFSLVALVSNTVSIIAEAAQRKGLALTVDVDPHMPAAVIGDEDRL 363

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+   +L+NA+ F+ +GS  +     D+        FSV + G  IP+D  + +F+RF 
Sbjct: 364 RQVLLNLLNNALKFTHEGSITLQVRCEDSLSDCQWICFSVTDTGIGIPKDQHEHLFHRFY 423

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
              H   R   G GLGL+I +  I+L GG + + S +
Sbjct: 424 QVQHSSTREIGGTGLGLAISKRLISLMGGEIGLESEE 460


>gi|88798399|ref|ZP_01113984.1| Signal transduction histidine kinase [Reinekea sp. MED297]
 gi|88778839|gb|EAR10029.1| Signal transduction histidine kinase [Reinekea sp. MED297]
          Length = 589

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A + K+ F+  +S+ELR+PL  IIG   L++         + S ++  ++ SS  LL 
Sbjct: 218 QQASKAKSEFLATMSHELRTPLNGIIGSVQLMQHEA-----EQPSPWLNSLAVSSEALLT 272

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--- 679
            +ND+LD +++++G + +  +   L  ++ +++     +  +  + ++V+      S   
Sbjct: 273 QINDVLDFSSIESGQISIEPAPCDLIQMIRDIEAVFYPQSVDAELLLRVLLPDTWSSHCW 332

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD  ++ QI   +LSNA  F+  G  V+    +++G F + V + G  IP D  +++F
Sbjct: 333 VMADGHKIRQILLNLLSNAFKFTEHGQIVLAVQKQEDGQFQWRVSDTGIGIPADKLEAIF 392

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F       QR+  G GLGL+I      L GG ++++S     T     +P
Sbjct: 393 QSFQQAESDTQRQYGGSGLGLAISRRLAELMGGSLTVTSKPGQGTDFTLTLP 444


>gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula
           baltica WH47]
          Length = 843

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 35/262 (13%)

Query: 544 NVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           ++TD  R+E AL   +EA+R AD     K+ F+ ++S+E+R+P+  +IG  DLL  +KL 
Sbjct: 249 DITDLKRSEAAL---HEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL- 304

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +  Q  YV+ I  SS  LL L+NDILD + ++A  ++L      L   +    +S + 
Sbjct: 305 --DPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSF 362

Query: 661 KMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-------- 711
           K  E  + + + IS       + D  R+ Q+ + ++ NA+ F+  G   +          
Sbjct: 363 KASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREER 422

Query: 712 AARD------------NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           A RD              D +    SV ++G  IP     +V N F        RR  G 
Sbjct: 423 ADRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGT 482

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLGLSI    + L GG + + S
Sbjct: 483 GLGLSISRQLVELMGGELHLQS 504


>gi|254180087|ref|ZP_04886686.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
 gi|184210627|gb|EDU07670.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
          Length = 693

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 1000

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 127/254 (50%), Gaps = 21/254 (8%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E  L +  EA   A++ K  F+ ++S+E+R+P+  ++G  ++L  +   
Sbjct: 417 TLQDITHRKLMEEQLLKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLET--- 473

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  +Q +Y++   AS+  LL++++D+LD + ++   ++L   +  L  L++ +   ++ 
Sbjct: 474 SLTDEQREYLQLAHASAESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSG 533

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAAR 714
           K     +++    +  L S F+ D  RL Q+   IL NA+ F+ KG       V + + R
Sbjct: 534 KAGSKGLKLAFHIEKDLPSTFIGDPVRLKQVLFNILGNAIKFTKKGEIALSVEVYMPSER 593

Query: 715 DNG----DF------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           ++G    DF      +F VK+ G  IP +    +F+ F+       R   G GLGL+I  
Sbjct: 594 NSGLSNSDFPEEVALLFKVKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAISS 653

Query: 763 SFINLHGGHVSISS 776
             + L  G + + S
Sbjct: 654 QLVELMEGRIWVES 667


>gi|119717079|ref|YP_924044.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119537740|gb|ABL82357.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 712

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISASSTIL 620
           L +A ++K+ FV  VS+ELR+PLT+++G  +LL +   L    + Q + V+  +A    L
Sbjct: 480 LMRAIQVKDEFVASVSHELRTPLTSVLGHLELLGERDDLTDEVAAQLRVVQRNAARLQAL 539

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L+ +  I  +A    G ++LN   + L  +++E  +++     ++++ I+V + G L   
Sbjct: 540 LSDLLLIGQIAD---GTLELNSGPVDLRTVVDEAVEAVRAVADQSDVSIRVEAPGTL-PA 595

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           VAD QRL Q+   +LSNA+ +   G +V ++  R +      V + G  I +   + VF 
Sbjct: 596 VADGQRLRQVLDNLLSNAIKYGRAGCSVTVELRRADDGVELLVADTGMGIADHDREHVFG 655

Query: 741 RFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF     A R    G GLGLSIV S +  HGG V++ S     +T    +P 
Sbjct: 656 RFFRGGEAVRQHLPGTGLGLSIVASIVAAHGGTVTVESELGRGSTFRVALPG 707


>gi|229917679|ref|YP_002886325.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469108|gb|ACQ70880.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 133/245 (54%), Gaps = 26/245 (10%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TML F +VT                 + D +K   V  VS+ELR+PLT+IIGFT+LL+  
Sbjct: 406 TMLVFRDVTHET--------------EVDRLKTELVSTVSHELRTPLTSIIGFTELLRFR 451

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           KL +  S+  +Y+  I   +  L +L++++LD+  +++G    +     L+ +L   +Q+
Sbjct: 452 KLSAERSE--KYLGMIHQETLRLEDLISNLLDVQRMESGQQTYHNEPERLSAIL---EQA 506

Query: 658 IATKMHENNIRIKVIS-DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           IA  +H+ + +   I+ D     +V  DR RL Q+F  +L NA+ +S +G  + ++ A +
Sbjct: 507 IA--VHQGSSQHHHITFDCTEDVYVYGDRTRLNQLFMNLLHNAVKYSPRGGEINVRVACE 564

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             D+I  S++++G  IP+     +F++F  V N+   +  G GLGL+I +     HGG +
Sbjct: 565 RPDWIDISIEDHGIGIPQTALPKLFDKFYRVDNSASRKIGGTGLGLAICKEIAEGHGGTI 624

Query: 773 SISSS 777
             +S+
Sbjct: 625 HATSN 629


>gi|324327182|gb|ADY22442.1| histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 458

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D     
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIV 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++  + +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMERIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 457


>gi|307331825|ref|ZP_07610925.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306882522|gb|EFN13608.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1484

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 18/248 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R+   L EK   L  A + K+ F+ ++S+ELR+PL +++    LL  +  G L+ ++ Q+
Sbjct: 927  RSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNPEGRLSGQEVQF 986

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  S + LL L+NDILDL+ ++AG M +    + L  +L+ V  +      +  +  
Sbjct: 987  AATIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLVKILDYVNATFRPLAVDRRLSF 1046

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
            ++ + +       +D QRL QI   +LSNA+ F+S G  V L+  R  G           
Sbjct: 1047 EIAVGEDVPREMFSDEQRLQQILRNLLSNALKFTSSGG-VTLRVERTPGAEFEEEALRSA 1105

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 F+V + G  IP +    +F  F  +     R+  G GLGLSI      + GG + 
Sbjct: 1106 DAVIAFAVTDTGIGIPPEKLPVIFEAFQQSDGTTSRKYGGTGLGLSISREIAGMLGGRI- 1164

Query: 774  ISSSDEGV 781
            ++ S+ GV
Sbjct: 1165 VAESELGV 1172


>gi|304312238|ref|YP_003811836.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
 gi|301797971|emb|CBL46193.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
          Length = 939

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 127/247 (51%), Gaps = 19/247 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +A   KN   +     +N F+  +S+E+R+P+  I+G T+LL+ + L  +   Q+ Y
Sbjct: 406 RQAQASHLKNAIAQAEIRARNEFLTQLSHEIRTPMNGILGMTELLEETPLSPI---QNDY 462

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I+AS + LL +++DILD + ++ G M L+ S   L  +LN+  +    +  E +I++
Sbjct: 463 VKTITASGSSLLGILDDILDYSRIETGKMALDISIFELATVLNDCLEVFQPRAQEKSIQL 522

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVK 724
             ++       V  D  R+ Q+ + ++SNA+ F+ +G  V+L  + D    +    F V+
Sbjct: 523 NRLTSNDTPVHVKGDPIRIRQVLAHLISNAIRFTEQGE-VLLTVSYDLDKTSPHIRFEVR 581

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRG--VGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP+   + + +        GQ+ G   GLGL+I    + + GG ++ +S     +
Sbjct: 582 DTGVGIPKQRLRQLLD--------GQQSGDKSGLGLTIASQLVRMMGGRLNATSEPGKGS 633

Query: 783 TINCRIP 789
           T    IP
Sbjct: 634 TFWFSIP 640


>gi|218288606|ref|ZP_03492883.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241263|gb|EED08438.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 463

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 11/244 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQY 609
           A RAL      +R++ E +  FV H S+ELR+PL  + +    + +      L+   S+ 
Sbjct: 205 ASRAL----RPIRRSFEEQRRFVAHASHELRTPLAVMRLQIDRMFRHPAETILD--MSEV 258

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  ++  ++ L  LVND+L LA  D G   L   ++ L  +  E     A    E ++ +
Sbjct: 259 IASLARETSRLQRLVNDLLTLAKADEGETVLRLRSVDLATIAREAALRFAPLAEEKSVEL 318

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +V         VAD  RLL++ S ++ NA+ F+  G  V ++A       I +V++ G  
Sbjct: 319 RV--SAAETPIVADPDRLLELLSILVDNAIAFTPSGGWVEMEARLSGSTAILAVRDTGRG 376

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGV-TTINCR 787
           IP +    VF+RF         RG GLGLSI +    +HGG + I S    G  T +  R
Sbjct: 377 IPREHLPRVFDRFYQVDPSRSTRGAGLGLSIAKWIAEVHGGQIRILSPGSHGAGTEVEVR 436

Query: 788 IPSK 791
           +P +
Sbjct: 437 LPRR 440


>gi|189466804|ref|ZP_03015589.1| hypothetical protein BACINT_03180 [Bacteroides intestinalis DSM
           17393]
 gi|189435068|gb|EDV04053.1| hypothetical protein BACINT_03180 [Bacteroides intestinalis DSM
           17393]
          Length = 877

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++ +  L + +  L +A   K  F  +VS++ R+PLT I    + L   K  SL  +  Q
Sbjct: 350 IQQKEQLEQLSRELEEATHAKLVFFTNVSHDFRTPLTLIADPVNQLLADK--SLGERPHQ 407

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHEN 665
            +E +  +  ILL LVN ILD   V+ G M+L+       DLL+  +    S    + + 
Sbjct: 408 LLELMKKNVNILLRLVNQILDFRKVENGRMELHLEPF---DLLSSFRGWNDSFRMALLKK 464

Query: 666 NIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +I    +V  D      +AD +++ +I+  +LSNA+ ++ +   +I++   +  +F FSV
Sbjct: 465 HISFFFEVTPDMDF-RMMADSEKMERIYFNLLSNAVKYTPENGKIIVRLEAEATNFRFSV 523

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            N+GS I      ++F RF      G + G G+GL++V +F+ +HGG ++  S ++G T
Sbjct: 524 FNSGSHISPKEVDAIFERFYQID--GHQAGTGIGLALVRAFVEMHGGQITAHSDEKGAT 580


>gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1340

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 15/264 (5%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           PN    L  ++VT+  + E  L +  EA  +  + K  F+ ++S+E+R+P+  IIG + L
Sbjct: 567 PNGVVGL-LLDVTERKQMEVELRKAKEAADEVSKAKGDFLANMSHEIRTPMNAIIGMSHL 625

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
              +    LN KQ  YV  I  ++  LL ++NDILD + ++AG +        L+++L+ 
Sbjct: 626 ALNA---DLNPKQRGYVSKIDMAAKSLLGIINDILDFSKMEAGKLVTEDVDFRLDEVLDN 682

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
           +   IA K  E  +      D  +  + V D  R+ Q+   +  NA+ F+  G  V+   
Sbjct: 683 LTNIIAVKAEEKGLEFLFDIDPHIPLALVGDPLRIGQVLINLCGNAIKFTDSGEVVVGVK 742

Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            L  + D  +  F+V+++G  + ++    +F  F        R+  G GLGL+I +  + 
Sbjct: 743 LLNKSEDGLNLQFNVRDSGIGLSQEQQDKLFKSFSQADASITRKYGGTGLGLTISKRLVE 802

Query: 767 LHGGHVSISSSD-EGVT---TINC 786
           + GG + ++S + +G T   T+NC
Sbjct: 803 IMGGKIWVTSDEGQGSTFSFTLNC 826


>gi|16127201|ref|NP_421765.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221236002|ref|YP_002518439.1| GAF/PAS-family sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|13424601|gb|AAK24933.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220965175|gb|ACL96531.1| GAF/PAS-family sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 713

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 11/282 (3%)

Query: 516 GTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           G L  LS +S+  +  I  P   T+ +F++VT+    E  L +  E   +A  +K+ FV 
Sbjct: 287 GALRWLSVNSLPIFDKIGEPPNLTVTSFIDVTELRERETELRDALELAERASRVKSQFVA 346

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+E+R+PL  +I     L+ S   +L  +Q + VE I  S T L ++++ +LDLA ++
Sbjct: 347 NVSHEIRTPLNGVIALASALRQS---ALTDRQREMVEIIVESGTTLESILSALLDLAKIE 403

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693
           A  M+L   +  L DL+         K     +   V      G+ +  D Q++ QI   
Sbjct: 404 AERMELEIVSFGLEDLVRSSTDLFKIKADNKGLGFDVSVIAPPGARYRGDAQKIRQILWN 463

Query: 694 ILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +L+NA+ F+  G    S  +  A       +  V++ G  +  +M   +F  F+      
Sbjct: 464 LLANAIKFTDAGEIAVSVTVEGADPAAQTLLIEVRDTGVGLSPEMEHVLFEPFIQGDASA 523

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RR  G GLGL+I  +   + GG +   +  E  +     +P
Sbjct: 524 TRRFGGTGLGLTICRALARMMGGDIEALARAERGSVFRVHVP 565


>gi|146297007|ref|YP_001180778.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410583|gb|ABP67587.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 467

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L   + ++ SF+ +VS+ELRSPLT+I GF + +    +   + K+  Y+  +      
Sbjct: 238 EKLENLEMMRKSFISNVSHELRSPLTSIRGFIEGILDRTIP--DEKRDFYLNLVREEVIK 295

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L NL+N +L+L+ ++ G + LN ST  +  ++ E       ++ E  I + +  +  L  
Sbjct: 296 LNNLINQLLELSRLEWGKINLNLSTFKIYSVIAEELIKFEKRIEEKKIEVFLEVNENL-M 354

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             ADR  + ++   +L NA+ ++  G  + + +  +NG    ++++ G  IPE + K ++
Sbjct: 355 VKADRDLISRVVHNLLDNAIKYNKVGGKIYIYSEVENGKAYITIQDTGIGIPEKLQKLIW 414

Query: 740 NRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            RF   +  R   +GVGLGLSIV+  I LH  ++ +  S+EGV T
Sbjct: 415 ERFYKVDESRSLEKGVGLGLSIVKEIIKLHKQNIWV-ESEEGVGT 458


>gi|320178565|gb|EFW53530.1| Sensor protein torS [Shigella boydii ATCC 9905]
          Length = 904

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|317479397|ref|ZP_07938531.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904471|gb|EFV26291.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 623

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 15/252 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   +AD +K++F+ ++S+E+R+PL  IIGF+ LL   +     
Sbjct: 379 DITQLKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLLHYVE---NE 435

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  I+ ++ +LL L+ND+LDL+ ++AG ++L+       +L+ E     +   +
Sbjct: 436 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEE-----SITEY 490

Query: 664 ENNIR--IKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           E N+   +K+ +      G    D  R+ QI +  +SNA+  + +G   +      +G  
Sbjct: 491 ERNVPAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGHIEVYYETDTDGIR 550

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           I SV + G  IP D    +F RF       Q  G GLGLSI +S +    G +++ S+  
Sbjct: 551 I-SVSDTGCGIPPDKLGMIFERFEKVDSFAQ--GAGLGLSICKSIVEKMNGVITVDSTMG 607

Query: 780 GVTTINCRIPSK 791
             +T    +P +
Sbjct: 608 VGSTFTVELPCR 619


>gi|300812269|ref|ZP_07092705.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496689|gb|EFK31775.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 399

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 122/219 (55%), Gaps = 8/219 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNL 623
           ++ K+  + +VS+++R+PLT+IIG+  LLK    G++ S++   +Y+      +  + +L
Sbjct: 164 EQSKDELITNVSHDIRTPLTSIIGYLGLLKN---GAVTSQEDMLKYINIAYDKAEQMKSL 220

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            ND+ +  T+ +   KLN + I +  ++ +V      +  +  I   V +        AD
Sbjct: 221 ANDLFEYTTLKSTKTKLNVTPINIKGMMEQVAAGFELEAEKKGIAFSVKARPDDLIVNAD 280

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
            ++L+++++ ++SNA+ +++  S + L A   N + +   V+NNG  IP+D  K +F+RF
Sbjct: 281 VEKLVRVYNNLISNALKYAAGASRINLVANLINHEQVELRVENNGEPIPKDKLKKIFDRF 340

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             V ++   +  G GLGLSIV+  + LHGG +   S+ +
Sbjct: 341 YRVESSRNTKTGGTGLGLSIVQGGVELHGGTIRCESNKD 379


>gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1444

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 911  QKLSELKIKFFTNISHELRTPLTLIQGPIQELREKE--KLSQKGMQYVDLMEKNTKQMLQ 968

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 969  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1028

Query: 683  DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G    V +  + D+      V+++G  IP+     +F 
Sbjct: 1029 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEIFE 1088

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  I+LH G +   S +
Sbjct: 1089 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPE 1128


>gi|288573468|ref|ZP_06391825.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569209|gb|EFC90766.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 694

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 136/265 (51%), Gaps = 21/265 (7%)

Query: 544 NVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++ D +R + +  +++EA L +A++ K+ F+ +VS+E+R+PL  I+G   +++    G  
Sbjct: 180 DLNDELRGKVSRLQESEAQLAEANQAKDRFLANVSHEIRTPLNAILGTAAIVR----GKS 235

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            ++  + +E I      LL L+NDILDL+ + AG + L+ +   L +LL  ++ S  ++ 
Sbjct: 236 PAEMDRALEVIKDEGHALLALINDILDLSKMGAGFLDLDEAPFDLFELLEALEGSYRSEA 295

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720
               +   +     +  ++  D  RL Q+ S +L NA+ F+S G  ++ +K+ R +GD +
Sbjct: 296 KRKGLDFSLDLSKDIPRWITGDPIRLRQVLSNLLGNAVKFTSSGRVSLTVKSLRSDGDKL 355

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              FSV + G  IP ++   +F  F        R+  G GLGL+I    +   GG +S+ 
Sbjct: 356 TLSFSVFDTGIGIPREVVPRLFKPFSQADGSTSRKYGGTGLGLAISRRIVRAMGGDISV- 414

Query: 776 SSDEG--------VTTINCRIPSKE 792
            S+ G        V  I C  P  E
Sbjct: 415 ESERGRGSTFSLDVEVIPCDPPVPE 439


>gi|17549841|ref|NP_523181.1| capsular synthesis two-component sensor kinase and response
           regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17432097|emb|CAD18773.1| probable capsular synthesis regulatory (two-component sensor kinase
           and response regulator hybrid) transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 1098

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 10/245 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L  V++ +    E  L E  +   +A+  K+ F+  V +E+R+PL   +G  +LL  S 
Sbjct: 485 LLGLVDMNERKANEILLMEAKQTADEANRAKSMFLAIVGHEIRTPLHGAMGHLELLARS- 543

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+ +Q ++V+  S S   LL LVND+LD   ++A  ++++   +  N++L    +S 
Sbjct: 544 --ALSLEQREWVDMTSRSFDALLTLVNDLLDSTKLEANALQISPVPMCPNEVLERCARSF 601

Query: 659 ATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RD 715
              + +  +    I+D         D QRL QI   +LSNA  F+ +G+  I      R+
Sbjct: 602 GAAIVQGGVAFHCITDPDLDLVVDGDDQRLTQILQNLLSNAAKFTERGTITIASRCLKRE 661

Query: 716 NGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           +G     F V + G  IP  M  ++FN          RR  G GLGL +  +  +L GG 
Sbjct: 662 DGKVWARFEVADTGIGIPAAMQSTIFNPLAQADDSISRRFGGTGLGLFLCRNLAHLMGGR 721

Query: 772 VSISS 776
           +S+ S
Sbjct: 722 ISVRS 726


>gi|17228224|ref|NP_484772.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130074|dbj|BAB72686.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1645

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 32/238 (13%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+ELR+PL  I+GFT ++   K  +L+    Q +  I+ +   LL+L+ND+L
Sbjct: 1153 KSEFLANMSHELRTPLNAILGFTQIMSHDK--TLSKDNQQNLTIINRAGEHLLDLINDVL 1210

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            +++ ++AG   LN ++  L  LL+ +++ +  +     + +K      +   + AD  +L
Sbjct: 1211 EMSKIEAGRTTLNINSFDLIHLLDNLQEMMQGRATAKGLHLKFEYAPNIAQHIQADESKL 1270

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDF---------------------------I 720
             Q+   IL NA+ F+  GS +IL+     GD+                           I
Sbjct: 1271 RQVLLNILGNAIKFTETGS-IILRVKMGTGDWGLGTEEDTKTHLSIPNTQSPITNPQSLI 1329

Query: 721  FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F +++ G  I +D    +F  F  + A R  ++G GLGL+I   ++ L GG +S+SS+
Sbjct: 1330 FEIQDTGIGICDDEVCVLFEAFGQTEAGRKSQQGTGLGLAISRKYVQLMGGDISVSSA 1387


>gi|88861266|ref|ZP_01135898.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
 gi|88816747|gb|EAR26570.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
          Length = 896

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 131/240 (54%), Gaps = 14/240 (5%)

Query: 545 VTDSV--RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGS 601
           ++D V  + E+   EK ++  KA++IK+ F+ ++S+E+R+P+  I G   L L+ + +  
Sbjct: 507 ISDQVYKQTEKLRLEKQKS-DKANKIKSEFLANMSHEIRTPINGIKGLHYLVLQQTDM-- 563

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              K  +Y+     +  +LL ++NDILD + ++AG ++L YS +    L ++++  + T+
Sbjct: 564 --RKVKEYIHQAENAVDVLLKVLNDILDFSKIEAGKLQLEYSEVYFTALFSQLETLVRTE 621

Query: 662 MHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD 718
           ++  +I + +I   K+   S   D+ RL Q+   +L+NA+ F+     + L   + DN  
Sbjct: 622 LNNKDITL-LIHYPKISPLSMFTDKIRLKQVLLNLLNNAIKFTEPDGKIELTMVQLDNKQ 680

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSVK+NG  I +   K +F+ F    +   R+  G GLGLSI +  + L GG +   S
Sbjct: 681 LRFSVKDNGIGIADLAQKQLFDAFTQADNSTSRKYGGTGLGLSICKHLVELMGGKIGFVS 740


>gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
 gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
          Length = 1382

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 4/244 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R+ +A   + E L + D  K +F  ++S+E R+PLT I+G  D L+  +L   + +  
Sbjct: 329 SARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPLDELR-GRLQGADEQVR 387

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  +   L  LVN +LD + ++AG M+  Y  + L  +  ++     + +    +
Sbjct: 388 TELDVIRRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLAAVTADLASVFRSAIERAGL 447

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +V           DR    ++   +LSNA+ F+  G T+ ++   D    +  + + G
Sbjct: 448 SFEVDCPPLPEPVHLDRGMWEKVVLNLLSNALKFTFDG-TIRVELRADGDAAVLRISDTG 506

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +P D    +F RF  + NA      G G+GL++V+  + LHGG +  SS+    TT  
Sbjct: 507 IGVPADEMPRLFERFHRIENARSRSDEGSGIGLALVQELVTLHGGDIDASSAVGRGTTFT 566

Query: 786 CRIP 789
            R+P
Sbjct: 567 IRLP 570


>gi|298248600|ref|ZP_06972405.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297551259|gb|EFH85125.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1036

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 121/235 (51%), Gaps = 7/235 (2%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N A ++ ++ K+ F+   S+ELR+PL  +   T L++       + K +  +  +     
Sbjct: 802  NSARKELEQRKDDFINMASHELRNPLAALKMQTQLVRKRLEKQSHHKAATALSKVEGPIK 861

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L  L+ ++LD++ + AG ++     + L+ LL EV +++  +++ ++   +++ DG + 
Sbjct: 862  QLERLIAELLDVSRIQAGKLEYQQEPVDLDALLQEVTETLP-QIYPSH---RILVDGAVH 917

Query: 679  -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             S + DR RL Q+F+ +L NA+ +S    TV +  +  +      V+++G  IP +    
Sbjct: 918  TSLIGDRDRLGQVFANLLCNAIKYSPGAETVEMDLSASDDMVTIRVRDHGLGIPREQRDK 977

Query: 738  VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F RF   A   Q+   G+G+GL IV   +  HGG +++ S     +T    +P+
Sbjct: 978  IFERFYRVAGPRQKAIPGLGMGLYIVSEIVKHHGGSITVDSEVGKGSTFTVTLPT 1032


>gi|229197363|ref|ZP_04324090.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293]
 gi|228585987|gb|EEK44078.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293]
          Length = 448

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 447


>gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 1166

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 128/254 (50%), Gaps = 14/254 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L ++   L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y
Sbjct: 579 QARQELEDRAHQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTAKQVEY 638

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I ++ + LL L+NDILDL+ V+AG M +N   + L  LL+ V  +      + ++  
Sbjct: 639 AGIIHSAGSDLLQLINDILDLSKVEAGKMDINPERVALAQLLDYVDATFRPLTTQKSLDF 698

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDF 719
            +  + G     + D  RL Q+   ++SNA+ F+ +GS  +         L A+   G  
Sbjct: 699 TIHTAPGVPVDLLTDDSRLRQVLRNLISNAVKFTERGSVRVRIEPATDGELPASVHRGGA 758

Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           +  F V++ G  IPE   +++F  F        R+  G GLGLSI     +L GG ++  
Sbjct: 759 VVAFRVEDTGIGIPEQQLEAIFGAFQQADGTTSRKYGGTGLGLSISREIAHLLGGALTAR 818

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    +P
Sbjct: 819 STPGRGSTFTLYLP 832


>gi|257060052|ref|YP_003137940.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590218|gb|ACV01105.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 845

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 27/257 (10%)

Query: 552 ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ++AL ++N  L++A       +  K+ F+ ++S+E+R+PL  IIGF+DLL+T      + 
Sbjct: 339 QKALAQQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTL---VRDY 395

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K   Y+  I +S   LL L+NDILDL+ ++A  ++L    + L  L+ E+KQ  + +  +
Sbjct: 396 KSRSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQ 455

Query: 665 NNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720
            NI +   V SD  L     D  RL QI   ++ NA+ F+ KG   I      N D++  
Sbjct: 456 KNIELITDVSSDIPL-LIEFDEIRLRQILFNLVGNALKFTQKGYIKI----TVNCDYLDL 510

Query: 721 ------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                   V++ G  IP D    +F  F     +  R   G GLGL+I +    + GG +
Sbjct: 511 NKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTI 570

Query: 773 SISSSDEGVTTINCRIP 789
           S+ S  E  +T     P
Sbjct: 571 SLHSESEKGSTFLMIFP 587


>gi|159897671|ref|YP_001543918.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890710|gb|ABX03790.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 631

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 154/347 (44%), Gaps = 24/347 (6%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH---IRNIAATCSRYYNESDGWDLFAA 502
           G+    PDGR+  +NPA          RL+   H   + +  A  +  Y E   ++    
Sbjct: 273 GIFRITPDGRVLRANPAL--------VRLAGFAHEHELVDYVADLTTMYVEPQRFEYLRE 324

Query: 503 IIT---SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNVTDSVRAERAL 555
           ++    S+D+    +          + E S +      +ML    T   +T   + E AL
Sbjct: 325 LLQTNGSYDEIESEVYRPATGERIWISETSRLVYAEDGSMLYAEGTIQEITARKQVEEAL 384

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEY 612
               +A   A+  K++F+ ++S+ELR+PL  IIG+++LL         +   Q+   +  
Sbjct: 385 RHARDAAEAANHAKSTFLANMSHELRTPLNAIIGYSELLMDDTDFDDPTMVEQFRHDIAQ 444

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ +   LLNLVND+LDLA V+AG  ++   T  LN L+ ++  +I     +N   +   
Sbjct: 445 INDAGHQLLNLVNDVLDLAKVEAGKYQVAAETFDLNSLVRDLIATINPMAQKNANSLYFE 504

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731
            +  L     DR  L QI   +LSNA  F+  GS  I  +       +   V++ G  + 
Sbjct: 505 PNKHLPLIHTDRSMLRQILLNLLSNAAKFTKAGSINISVSFDPASQHVQCRVRDTGIGMN 564

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++  + +F  F        RR  G GLGL++   FI L  G + + S
Sbjct: 565 DEQMQRLFEPFTQGDASTTRRYGGTGLGLALCRHFIELLNGSIQVES 611


>gi|22095655|sp|O49230|ETR1_BRAOL RecName: Full=Ethylene receptor 1
 gi|2896029|gb|AAC39497.1| ethylene receptor [Brassica oleracea]
          Length = 735

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 132/261 (50%), Gaps = 31/261 (11%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDIARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE +  SS++L  L+ND+LDL+ ++ G ++L   T  L+ L  EV   I 
Sbjct: 375 ---TPEQRLMVETVLKSSSLLATLMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDN 716
                  + I +     L  F V D +RL+QI   I+ NA+ FS +GS  +  L    DN
Sbjct: 432 PIAVVKKLPITLNLAPDLPEFVVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDN 491

Query: 717 ---GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
               DF              VK+ G+ I P+D+ K +F +F        R   G GLGL+
Sbjct: 492 RAPPDFFVVPTGSHFYLRVKVKDLGAGINPQDIPK-LFTKFAQTQSLATRSSGGSGLGLA 550

Query: 760 IVESFINLHGGHVSISSSDEG 780
           I + F+NL  G++ I S   G
Sbjct: 551 ISKRFVNLMEGNIWIESEGVG 571


>gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
 gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
          Length = 1320

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 12/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+  + E  L E  +        K  F+ ++S+E+R+P+  I+G   L   ++L  
Sbjct: 572 LLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL-- 629

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  Q +Y+  I+ S+  LL ++NDILD + ++AG + +      L+++   +   I+ K
Sbjct: 630 -DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFK 688

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716
             E  I   +  D ++    V D  RL Q+   +  NA+ F+ KG    S +    + D+
Sbjct: 689 AQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSVMPESQSSDD 748

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
               FSVK+ G  I ++    +FN F S A     R   G GLGLSI +  + L GG +S
Sbjct: 749 VTLRFSVKDTGIGIDKEKIADLFNAF-SQADTSITREFGGTGLGLSISKQLVELMGGQLS 807

Query: 774 ISSS 777
           +SS+
Sbjct: 808 VSSA 811


>gi|91782579|ref|YP_557785.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia xenovorans LB400]
 gi|91686533|gb|ABE29733.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia xenovorans LB400]
          Length = 944

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 112/214 (52%), Gaps = 9/214 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT I+GF+ +L  S     N+   + VE I   +  +  +
Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSPDAQPNA---ELVEAIHEEALRMTGI 732

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + AG ++LN    +L + +    ++    +  + +++K+ +D  L     D
Sbjct: 733 VTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLANHPVQVKLPADLPLLHL--D 790

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVF 739
              + ++FS +  NA  +++  + + + A R   D   F+  +V +NG  +P  M   VF
Sbjct: 791 AVLMERLFSNLFENAAKYTAPATPLTIGAQRLDTDGKSFVRVTVDDNGPGLPAGMEARVF 850

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +F        + G+GLGL+I  + +  HGG + 
Sbjct: 851 EKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIG 884


>gi|303248204|ref|ZP_07334468.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490468|gb|EFL50377.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 820

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 113/226 (50%), Gaps = 17/226 (7%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--------------TSKLGSLNSKQSQ 608
           ++ D +K  F+  VS+ELR+PLT+++GF  +++              T K      +  +
Sbjct: 355 KEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFTDLVAPALTEATPKTWRGAQQIRE 414

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I A    L  LV+D+LD+A +++G  + N + + L +      +++A       I 
Sbjct: 415 NLDIIVAEGQRLTELVDDVLDIAKMESGRCEWNMAPVSLAETAGHAVRAVAGLAARKGIS 474

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++      L   + DR RL+Q+F  +L NA+ F+  G+ ++++ + D  +   +V+++GS
Sbjct: 475 LENKLPANLPRILGDRDRLIQVFVNLLGNAVKFTEHGA-IVVEGSVDGSEIRVAVRDSGS 533

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            I     + +F +F    +    + +G GLGL I    I  HGG +
Sbjct: 534 GIAPADLERIFEKFKQAGDTLTEKPKGTGLGLPICRQIIERHGGRI 579


>gi|239906733|ref|YP_002953474.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796599|dbj|BAH75588.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 572

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 114/235 (48%), Gaps = 16/235 (6%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKT------------SKLGSLNSKQSQ-YVEYISAS 616
           + F+  VS+E+R+PLT+++GF  L+K             +    L ++Q Q  ++ I A 
Sbjct: 337 SDFLSMVSHEIRTPLTSVLGFAVLIKKRLARLLPASAVDTPKKRLQAEQIQDNLDIIVAE 396

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L +L+ND+LDLA ++AG M      +   +++  V  + A  +   NI +    +G+
Sbjct: 397 GERLKHLINDVLDLAKLEAGKMAFKSEPVDPAEVVRHVMNASAGLLQNTNIVLDTRIEGR 456

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L     DR RL+Q+   ++SNA+ F+ +G       A+ N   +  V + G  IPE    
Sbjct: 457 LPLVRGDRDRLIQVLVNLVSNAIKFTDQGYVACRARAQGN-TIVIEVSDTGIGIPESEQG 515

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            VF +F  +      + +G GLGL+I +  +  HGG +   S     +T    +P
Sbjct: 516 KVFEKFNQIGGTLTNKPKGTGLGLTICKHIVESHGGRIFCVSRPGAGSTFTFTLP 570


>gi|219855335|ref|YP_002472457.1| hypothetical protein CKR_1992 [Clostridium kluyveri NBRC 12016]
 gi|219569059|dbj|BAH07043.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 669

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 122/232 (52%), Gaps = 10/232 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           + ++++ ++ VS++LRSPL  I G  + +L+       N+K+   +  I   +  L+ LV
Sbjct: 435 ERLRSNLLRSVSHDLRSPLAGIKGSVSTILENGAFIDENTKKDLLIG-IYNDTEWLIRLV 493

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVA 682
            ++L +   D G + +  +  ++ ++++E  Q  S   K H    R+KV    K+     
Sbjct: 494 ENLLSMTRFDEGNVNIAKNMELVEEVVSEAVQRSSKCFKYH----RVKVNIPEKIIMVSM 549

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   + Q+   +  NA+ FS K S V +K   ++ D IF V +NG+ IPE +   +F+RF
Sbjct: 550 DGSLIEQVLINLFDNAVKFSPKHSLVEIKVYEESEDVIFEVADNGNGIPEKILPYIFDRF 609

Query: 743 VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +N  +    RRGVGLGL+I +S + LHGG ++  +  EG       IP ++
Sbjct: 610 FTNGSKVSDSRRGVGLGLAICKSIVELHGGKITAYNKKEGGAVFKFNIPKEK 661


>gi|193215590|ref|YP_001996789.1| histidine kinase [Chloroherpeton thalassium ATCC 35110]
 gi|193089067|gb|ACF14342.1| histidine kinase [Chloroherpeton thalassium ATCC 35110]
          Length = 1054

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 21/256 (8%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            VR + AL   NE LRK   +K  F+   +++L++PL +I+GF  L+K       N+K ++
Sbjct: 801  VRQKTALETSNEELRKLSNLKTEFLSIAAHDLKNPLQSILGFAQLVKE------NAKNAE 854

Query: 609  YV----EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             V    + I  SS  +  L+ D+L+ + +++G ++LN S + L  L + V  S+  + ++
Sbjct: 855  MVAQMGDAIYQSSKRMFLLIKDLLETSKIESGKLELNQSPVDLASLASIVADSLQFQAYQ 914

Query: 665  NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD--- 718
                I+V  + K    +AD  R+ ++   ++SNA+ +S   +T   V+ K   +NGD   
Sbjct: 915  KEQTIQVQME-KSCDVLADGDRISEVLENLISNAVKYSPNKTTITIVVRKTRSENGDGQE 973

Query: 719  -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
                +VK+ G  +  +  + +F RF   + R  G     GLGLSIV++ +  HGG V   
Sbjct: 974  LVQLAVKDEGLGLSAEDKQKIFGRFQKLSARPTGGESSTGLGLSIVKTLVEAHGGRVWAE 1033

Query: 776  SSDEGV-TTINCRIPS 790
            S  +   TT    +P+
Sbjct: 1034 SDGKNKGTTFFVELPA 1049


>gi|163738019|ref|ZP_02145435.1| hypothetical protein RGBS107_06394 [Phaeobacter gallaeciensis
           BS107]
 gi|163742585|ref|ZP_02149971.1| hypothetical protein RG210_06849 [Phaeobacter gallaeciensis 2.10]
 gi|161384170|gb|EDQ08553.1| hypothetical protein RG210_06849 [Phaeobacter gallaeciensis 2.10]
 gi|161388635|gb|EDQ12988.1| hypothetical protein RGBS107_06394 [Phaeobacter gallaeciensis
           BS107]
          Length = 516

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 154/349 (44%), Gaps = 23/349 (6%)

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
           + VW +   G + W+N++Y         + QK  G +   F E +   +    A  K   
Sbjct: 159 YPVWLQSDDGAVTWSNLAYDD-------LSQKIRGRNVD-FSEPLFTDLDDPMASGKPER 210

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAI 319
            ++   E      Y I       G    A+DV+     EI   + +    +    L++ +
Sbjct: 211 ISIPLPESKKKLWYNISTTETEAGWLCHAVDVNAVVDAEIAQRNFVQTLAKTFAQLSIGL 270

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD+NR L   N   ++L  +   FL++ P+     + LR    +PE  N+ +W+  + 
Sbjct: 271 AIFDRNRQLVLFNPVLIDLTALPANFLSSRPNLLTFFDRLRDQRMMPEPKNYSSWRHQMA 330

Query: 380 SVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
            + +++    +++TW LP+G    V    +P G   ++FE++T ++ L  ++ + +++  
Sbjct: 331 DLLEAAAEGRYQETWSLPSGSVYSVSGRPHPDGAIAFLFEDITAEITLTRQFRSELEMGQ 390

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---- 493
             +D + E +AVF  DG +  SN A+  LW+ + +    G+  +      SR + +    
Sbjct: 391 SIMDQMDEAIAVFANDGTMTFSNAAYHDLWQMDPD----GSFAKITIMDSSRVWQDMCAA 446

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +  W      +    + R +    ++L S + L   +  + N  TM++F
Sbjct: 447 TPAWGEIRDFVAG-SENRTAWWANVQLRSGTPLVCKVSAIQNGATMVSF 494


>gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
 gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
          Length = 1202

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 123/232 (53%), Gaps = 16/232 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E N   + A + K+ F+ ++S+E+R+P+  IIG + L   +KL   ++KQ  Y+  ++
Sbjct: 475 LEESNIQTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETKL---DNKQRHYISKVN 531

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKVI 672
           +S+  LL ++NDILD + ++AG +++      L+ +L EV   I  + K  + ++ I V 
Sbjct: 532 SSAQALLGIINDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQKKLSLIIDVA 591

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKNN 726
           SD      + D  R+ Q+ + + SNA+ F+  G      ST +++         F+VK+ 
Sbjct: 592 SDVP-DQLIGDPLRIKQVLTNLTSNAVKFTETGEVRVKVSTAMMR--ERECKINFAVKDT 648

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  +  +   S+F  F        R+  G GLGLSI ++ + L GG VS+ S
Sbjct: 649 GIGMTREQIDSLFQSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVSVES 700


>gi|18252351|gb|AAL66207.1|AF386525_1 putative ethylene receptor [Pyrus communis]
          Length = 741

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ +  
Sbjct: 315 ESMRARDLLMEQNIALDLASREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
             L  +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+ +T  L+ +  EV   I 
Sbjct: 373 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSIFREVHNMIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
               +   ++ + + +D  + + + D +RL+QI   ++ NA+ FS +GS  I       +
Sbjct: 432 PVASIKRLSVALNIAADLPVYA-IGDEKRLMQIILNVVGNAVKFSKEGSISITAYVAKSE 490

Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + RD    DF              VK++GS I P+D+  ++F +F        +   G G
Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDI-PNLFTKFTQTQTLASQNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574


>gi|46199441|ref|YP_005108.1| two-component system histidine kinase [Thermus thermophilus HB27]
 gi|46197067|gb|AAS81481.1| two-component system histidine kinase [Thermus thermophilus HB27]
          Length = 468

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 134/264 (50%), Gaps = 24/264 (9%)

Query: 532 PLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           PLP  +T        D V A  +AL      L++A E +  F+Q  S+ELR+P+T I+G 
Sbjct: 216 PLPEPET-------RDEVAALVKALNGMLTRLQEAFEAQTRFLQDASHELRTPITAILGH 268

Query: 591 TD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL+ +    L   Q + +E +   +  +  LV+D+LDL+   +G  ++    + + D
Sbjct: 269 VGYLLRRT---PLTEAQRESLEVVKREAERMGKLVSDLLDLS--QSGTWRIRPVPVRVLD 323

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           LL EV++  A K  +  I ++   D  +   + D  RL Q+ + ++SNA+     G+  +
Sbjct: 324 LLEEVREEFA-KSFDGAILVEAPEDLYV---LGDPDRLHQVMANLVSNAL---KAGARHV 376

Query: 710 LKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
              A D GD  +  V+++G  IPE+    +F RF  V  A   +R G GLGL+IV++ + 
Sbjct: 377 WLRAFDLGDKAVVRVEDDGEGIPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVKAILE 436

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
            HGG V + S     T  +  +P+
Sbjct: 437 AHGGEVWVESQVGKGTAFSFSLPA 460


>gi|134292639|ref|YP_001116375.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135796|gb|ABO56910.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1129

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 8/256 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  +VT     E  L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+  ++
Sbjct: 495 LCTLTDVTARKLTEDKLKEARTAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMARAQ 554

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L     ++ Q V    +SS  LL+ +ND+LDL+  ++  M L      L  +L+EV    
Sbjct: 555 LPLAERRRLQTV---MSSSDALLHTINDVLDLSKAESNQMALEAVPFDLRAVLHEVAAIF 611

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARD 715
                  ++R++ +    LG  +V D  R+ QI S ++SNA+ F+  G   +  L AA  
Sbjct: 612 RALADAKHLRLECVIAAGLGDGYVGDPARVRQIVSNLVSNAIKFTEHGRVTVEALPAAVP 671

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                  V++ G  I  D   ++F+ +V       RR  G GLGL +      L GG V+
Sbjct: 672 GRGVEIVVRDTGIGIEPDSMPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMGGDVT 731

Query: 774 ISSSDEGVTTINCRIP 789
           + S           +P
Sbjct: 732 VESRPGAGAVFTASLP 747


>gi|332711100|ref|ZP_08431034.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332350082|gb|EGJ29688.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 369

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 141/305 (46%), Gaps = 29/305 (9%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VNVTDSVRAE 552
           W++    +T++ D             D  LE + I  P    +  F    + VT  +   
Sbjct: 75  WNIPVVYLTAYSD-------------DITLERAKITQPFGYLLKPFEEEELRVTIEIALS 121

Query: 553 R--ALTEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           R  A T+  +AL   ++  E K+SFV  VS+E R+PL+ ++  T+LL+      +  K  
Sbjct: 122 RFQAETKIRQALVIEQELREQKSSFVSIVSHECRTPLSKVLLATELLERYSKDLVKDKHR 181

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH---E 664
           +Y E I  S   +  L+++IL +   +    KLN+    +N  L E+   +  +M    E
Sbjct: 182 KYFEQIKGSIQDMRQLLDEILFIEKAEGN--KLNFHPTPIN--LVELCSDLIEQMQLATE 237

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + RI + S G +     D Q L  IF+ +LSN + +S +G TV  +   +    IF +K
Sbjct: 238 GSHRIILTSQGNIPDAYMDTQLLRYIFNNLLSNGIKYSPEGGTVEFQLTVEGNWAIFKIK 297

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           ++G  IPE     +F  F   ++ G   G GLGLSIV+  +  H G + + S     T  
Sbjct: 298 DSGIGIPEQELSQLFEPFQRASNVGDIPGTGLGLSIVKKSVEQHRGQILVDSQVGVGTVF 357

Query: 785 NCRIP 789
             R+P
Sbjct: 358 TVRLP 362


>gi|296160597|ref|ZP_06843412.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. Ch1-1]
 gi|295889123|gb|EFG68926.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. Ch1-1]
          Length = 944

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 113/213 (53%), Gaps = 9/213 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT I+GF+ +L  S     N+   + VE I   +  +  +
Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSPDAQPNA---ELVEAIHEEALRMTGI 732

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + AG ++LN    +L + +    ++    +  + +++K+ +D  L     D
Sbjct: 733 VTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLANHPVQVKLPADLPLLHL--D 790

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FI-FSVKNNGSSIPEDMCKSVF 739
              + ++FS +  NA  +++  + + + A R + D   F+  +V +NG  +P  M   VF
Sbjct: 791 AVLMERLFSNLFENAAKYTAPATPLTIGAQRLDADGKSFVRVTVDDNGPGLPAGMEARVF 850

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +F        + G+GLGL+I  + +  HGG +
Sbjct: 851 EKFTRGEKESAKPGIGLGLAICRAIVEAHGGTI 883


>gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1235

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 166/358 (46%), Gaps = 32/358 (8%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE---------NRLSPGTHIRNIAATC 487
            +D + +G+  +  D +  + NPA+ S+  +K+ E         + + P   IR      
Sbjct: 588 AMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALVSTLDDLIHPDDRIR------ 641

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            + Y E    D   A    F    KS Q    L    V+EY++   P  + + T  ++T 
Sbjct: 642 VQEYREQYLGDPIGAFDVEFRMRGKSGQYHWLLSRGRVVEYTVDNQPK-RMVGTHKDITR 700

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++   L +KQ 
Sbjct: 701 HKSNEVALLEAKQDAESANLSKSEFLANMSHEIRTPMNAIIG---MLQLAQRTELTAKQE 757

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y++    S+  LL ++NDILD + ++AG ++L      L+ +L+      A K  +  +
Sbjct: 758 DYLDKAGFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHALDLNALKSQQKGV 817

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720
            + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+        
Sbjct: 818 ELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGEIEL--GCEDVGERDHRITLK 875

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++   S+F+ F        R+  G GLGLSI +  +++ GG + + S
Sbjct: 876 FWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGQMQVQS 933


>gi|29347830|ref|NP_811333.1| two-component system histidine kinase, FrrD [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572216|ref|ZP_04849620.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
 gi|29339732|gb|AAO77527.1| two-component system histidine kinase, FrrD [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838396|gb|EES66483.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
          Length = 482

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 119/216 (55%), Gaps = 4/216 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D  K +F+  +S+EL++P+  I+    LL+  ++G LN +Q Q  + I  +S  LL+
Sbjct: 255 KELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKSIKENSERLLS 314

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           +  ++L++  V+AG ++L        +L+    ++   +  + NI+I+V   + K+G   
Sbjct: 315 ITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKLF 374

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
            D +++  + + +LSNA+ +S +   V++  AR  GD I   V++ G  I     KS+F+
Sbjct: 375 VDSEKIAWVLTNLLSNAIRYSKENGRVVI-GARQEGDMIDLYVQDFGKGIDPRYHKSIFD 433

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI   F+  HGG +++ S
Sbjct: 434 RYF-RVPGTKVQGSGLGLSISRDFVEAHGGTLTVES 468


>gi|310796718|gb|EFQ32179.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1990

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 19/247 (7%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K+ F+ ++S+E+R+PL  I G    L+ +    LN +Q  Y   I  S+  LL
Sbjct: 1322 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---VLNEEQRDYTNTIQTSANSLL 1378

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  I +  + ++V
Sbjct: 1379 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWV 1438

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGD----FIFSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F+++G       V    A  N D      F++ + G    
Sbjct: 1439 KGDKVRIRQVLLNVIGNAIKFTTEGEVFSRCRVYKDGASSNLDNEIVLEFAIIDTGRGFT 1498

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT---TIN 785
            ++    +F  F  +  +   Q  G GLGL I    + LHGG +  S+   +G T   T  
Sbjct: 1499 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGSAVPGKGSTFTFTAK 1558

Query: 786  CRIPSKE 792
              +P+KE
Sbjct: 1559 FALPTKE 1565


>gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 683

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 13/235 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +AL +       A  +K+ F+ ++S+E+R+P+  IIG T+L+  + L   +++Q +Y+
Sbjct: 101 ANKALEQARAQSEIAARLKSEFLANMSHEIRTPMNGIIGMTELVLDTHL---STEQREYL 157

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669
           + + +S+  LL L+NDILD + ++AG + L      L ++L+   + +  +    ++ + 
Sbjct: 158 DLVKSSAESLLGLLNDILDCSKIEAGKLNLEAIPFSLGEILHATLRPLTLQAGRKDLTLT 217

Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSV 723
            +++ D  L + V D  RL QI   ++SNA+ F+ +G   +   A    D        SV
Sbjct: 218 WEILPD-VLDTLVGDPTRLRQIVVNLVSNAIKFTERGGIAVRAQAIVEADLRQCVLYCSV 276

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + G  IP +    +F+ F  V  +   Q  G GLGL+I    + + GG + + S
Sbjct: 277 TDTGIGIPPEKRHVIFDPFIQVDGSTTRQYGGTGLGLTITAHLVTMMGGRIWVES 331


>gi|261368232|ref|ZP_05981115.1| sensor histidine kinase KdpD [Subdoligranulum variabile DSM 15176]
 gi|282569741|gb|EFB75276.1| sensor histidine kinase KdpD [Subdoligranulum variabile DSM 15176]
          Length = 367

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 138/259 (53%), Gaps = 8/259 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLK 595
           +++ + VT +++  R + EK  A  L K ++++   ++ +S++LR+PLT+I G   +LL 
Sbjct: 107 IVSIITVTLAIQNIRNIEEKERAALLAKNEQLRADLLRAISHDLRTPLTSISGNAANLLA 166

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +     ++Q  +++ I   S  L+NLV ++L +  ++ G M L  ST ++ +++ E  
Sbjct: 167 NDEKLDGEARQQIFLD-IYDDSIWLINLVENLLSITRIEDGRMNLRLSTELVGEVIEEAL 225

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +    K  E+ IR+ +  +  L     D + ++Q+   ++ NA+ ++  GST+ + A   
Sbjct: 226 RHTHRKSCEHTIRVDLPDELLLARM--DARLIVQVLINLVDNAIKYTPAGSTITVAARAQ 283

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
           +G  + SV ++G  I   +   VF  F +  H+    RR +GLGL++ ++ ++ HGG ++
Sbjct: 284 DGFAVLSVLDDGPGIAPHIRPHVFEMFYTGEHKVADSRRSLGLGLALCKAIVDAHGGTIT 343

Query: 774 ISSSDEGVTTINCRIPSKE 792
           ++ +          +P  E
Sbjct: 344 LTDNPPHGCNFTFTVPRGE 362


>gi|116251585|ref|YP_767423.1| two component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256233|emb|CAK07314.1| putative two component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 564

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 183/429 (42%), Gaps = 35/429 (8%)

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           + L +G  + +    +  GG I  +E+++  + +E       +     + ++  G+ +F 
Sbjct: 130 FALSDGGMVSLTCAPSRDGGWILSYEDISTLIRVEDSLTEQHRRFDAALSNMPHGLCMFD 189

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDE 510
               + L N ++  ++   +    PGT + +I A  SR  N  +D    F  +  +    
Sbjct: 190 STKNLILCNASYARMYNLPDLLTQPGTPLVDILAYRSREGNGPADTTTYFDVVFEATVRG 249

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL-------- 562
             + Q  + L    V++ +  P+ N   + T  +VT +VR    L   ++ L        
Sbjct: 250 APASQNIV-LADGRVIKITHNPMQNGGYVATHEDVTKTVRLAEDLRRHHDQLEATVKSRT 308

Query: 563 -----------------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                            R  +E++  FV   S+E R+PL  I      L   K G++  +
Sbjct: 309 AEVERQARELERMLAQERNINELQRQFVAMASHEFRTPLAIIDAAAQRL-LRKRGAVEPE 367

Query: 606 -QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKM 662
             S  V+ I AS T +++L+  IL    +D G + +NY    L  L+     +QS   K 
Sbjct: 368 FLSDKVDQIRASVTRIVDLMESILSAGRLDTGKIDINYDACALRSLIKTCCERQSTIAKS 427

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           H   + I    DG   S  AD + L Q+F+ +LSNA+ ++   S V + A  + G+   S
Sbjct: 428 HSFVLDI----DGLPESIDADPRTLAQVFTNLLSNAVKYAPGTSEVRVTAWAETGNVKVS 483

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + ++G  I  +    +F R+          G G+GL++V+  I LH G + + S+    +
Sbjct: 484 ISDDGVGIDAEDVPRLFQRYFRARTSTGIAGTGIGLNLVKQIIELHNGSIEVRSARGCGS 543

Query: 783 TINCRIPSK 791
           T    +P K
Sbjct: 544 TFTVTLPIK 552


>gi|312968949|ref|ZP_07783156.1| TMAO reductase sytem sensor TorS [Escherichia coli 2362-75]
 gi|312286351|gb|EFR14264.1| TMAO reductase sytem sensor TorS [Escherichia coli 2362-75]
          Length = 900

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA++ K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KANQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|312875871|ref|ZP_07735861.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797352|gb|EFR13691.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 467

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN         +++ + +   +TEK E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    ADR  + ++   +L NA+ ++  G  + +
Sbjct: 327 IAEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF   +  R    GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGV 781
            ++ +  S+EGV
Sbjct: 446 QNIWV-ESEEGV 456


>gi|237811925|ref|YP_002896376.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
 gi|237503975|gb|ACQ96293.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
          Length = 693

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|255692100|ref|ZP_05415775.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622252|gb|EEX45123.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 624

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 128/247 (51%), Gaps = 9/247 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL  ++     
Sbjct: 378 DITELKKTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSALLAATE---DM 434

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++  Y   IS ++ +LL L+ND+LDL+ +++G ++L+ S   L +LL+E       ++ 
Sbjct: 435 AEKELYNSLISHNNELLLELINDVLDLSKLESGYLELHPSWFNLAELLDESVAEYTRQLA 494

Query: 664 EN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               +R   +  G L     DR R+ QI +  LSNA+  ++ G   +     D+      
Sbjct: 495 AGVELRTHYLDQGFLVEL--DRLRIKQILNNFLSNALKNTTSGYVEVFYEI-DSSYVRIG 551

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G  IP++M + +F RF       Q  G GLGL I +S ++   G +   S     T
Sbjct: 552 VRDTGRGIPQNMLEKIFERFEKVDSFTQ--GAGLGLPICKSIVDKMNGRIWADSQLGIGT 609

Query: 783 TINCRIP 789
           T    +P
Sbjct: 610 TFMVELP 616


>gi|220916860|ref|YP_002492164.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954714|gb|ACL65098.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 844

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 6/227 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ +ALR AD  K  F+  +S+ELR+PL  I     LL  +  G   +++++ V  I   
Sbjct: 458 QREQALRDADRRKTDFLAVLSHELRNPLAPIRNAVYLLHHAPPGGPQAERARAV--IERQ 515

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L  LV+D+LDL+ V+ G + L  + +   +++      +     E    + +  D +
Sbjct: 516 ADHLAKLVDDLLDLSRVNFGKIALQRTVLDAREVVRRTCDDLRPLFDERGPALHLDLDDQ 575

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                AD  RL QI   +L+NA+ F+  G  V +    + G  +  V++ G  I   + +
Sbjct: 576 PVWVDADPTRLGQIAGNLLTNAVKFTPPGGRVGVTVRAEGGACVLRVRDTGVGIDPGLLE 635

Query: 737 SVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           ++F  F + A R +   R G+G+GLS+V S + +HGG V   S   G
Sbjct: 636 AIFEPF-AQAERTRWTARGGMGIGLSLVRSLVGMHGGTVVARSEGAG 681


>gi|77456275|ref|YP_345780.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens
           Pf0-1]
 gi|77380278|gb|ABA71791.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 596

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 122/253 (48%), Gaps = 13/253 (5%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + Q  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 342 LLTYSLTPVSHTQGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 391

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     L +        S++S  ++ ++     L+ L+ND+L+ +   +G+ KL  +
Sbjct: 392 VTGMHMAFGLFRERAKFPEESRESDLLDTVNEEMQRLMQLINDLLNFSRYQSGLQKLTLA 451

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + +LL   +   A    +  + + V + G L    AD+ +L ++   ++ NA+  ++
Sbjct: 452 PCSIEELLERARLRFADSAAQKGVALNVEAQGSLPRLQADQAQLDRVLDNLIDNALRHTA 511

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 512 RDGLIRLQARRHGERVIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 569

Query: 764 FINLHGGHVSISS 776
            + LHGG + + S
Sbjct: 570 IVQLHGGRMGVYS 582


>gi|193066318|ref|ZP_03047368.1| TMAO reductase system sensor TorS [Escherichia coli E22]
 gi|194428476|ref|ZP_03061016.1| TMAO reductase system sensor TorS [Escherichia coli B171]
 gi|192926025|gb|EDV80669.1| TMAO reductase system sensor TorS [Escherichia coli E22]
 gi|194413528|gb|EDX29810.1| TMAO reductase system sensor TorS [Escherichia coli B171]
          Length = 904

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|302342987|ref|YP_003807516.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639600|gb|ADK84922.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 610

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 156/348 (44%), Gaps = 34/348 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I  + +G+ VF  + R+   NPA R+L    E  L  G+     A +C+    +     +
Sbjct: 272 ISSIEDGLVVFDTNLRVASINPAARALL---EMPLGQGS-----APSCADILPDERLCQI 323

Query: 500 FAAII-----TSFDDERKSL-----QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             A +      +  DER+ +     + T E L      +S+  +      L+ V +    
Sbjct: 324 IRAAVENGARPALPDERRVIAIRKGETTKECL------FSVTAIRGGDRRLSGVVL---- 373

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                L      L++ + +K+ FV   S+ELR+PLT++     LL    +  L  +  + 
Sbjct: 374 -----LLRDVTRLKEVERLKSEFVMAASHELRTPLTSLGMSVGLLLEHAVAGLAERDREL 428

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++        +  LV+D+LDL+ ++AG ++L + ++ +  L +  K     ++  N + +
Sbjct: 429 LQAAHEEIQRMKALVDDLLDLSKIEAGRIELEFESVSVATLFDHAKAVFKNQLEMNGVSL 488

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               D       AD  ++  + + ++SNA+ +  KG  + L A+        SV+++G  
Sbjct: 489 TAELDAAAPPVRADANKITWVLTNLISNALRYVGKGGHIALAASVIGPCAHLSVRDDGPG 548

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           IP +    +F +FV    R +  G GLGL+I +  +  HGG + + S+
Sbjct: 549 IPPEFQSKIFQKFVQVQGR-EAGGTGLGLAICKEIVRAHGGAIWVESA 595


>gi|237720759|ref|ZP_04551240.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
 gi|229449594|gb|EEO55385.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
          Length = 254

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++       +++ +V 
Sbjct: 10  ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 69

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHENNIRIK 670
            IS +S  L+ L++DILDL+ +++  +K  YS   L  ++ ++ K+ +   + E  I IK
Sbjct: 70  LISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPE--IEIK 127

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNG 727
            +          D  RL Q+    ++NA  F+ +G      ++    D+   +F V++ G
Sbjct: 128 AVLPDDDIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLF-VEDTG 186

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP++  K +F+RF   N     ++G GLGLSI ++ +    G +S+ S
Sbjct: 187 EGIPQECQKEIFDRFYKVNTF---KQGTGLGLSICKTIVEHLQGSISVVS 233


>gi|226193421|ref|ZP_03789028.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225934561|gb|EEH30541.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 693

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|215486110|ref|YP_002328541.1| hybrid sensory histidine kinase TorS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264182|emb|CAS08526.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli O127:H6 str. E2348/69]
          Length = 910

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA++ K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KANQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAKIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|153005213|ref|YP_001379538.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028786|gb|ABS26554.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 418

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 552 ERALT---EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E ALT     N  L + DE+K++F+ ++++EL +PLT + G+  +L + KLG ++ +Q +
Sbjct: 146 EAALTGARRANARLLELDELKSAFMHNLAHELSTPLTPLAGYLRILSSEKLGPMSPQQKR 205

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V+ +  S T L  +V+++ D A++ AG   +    +  + L +EV       + +  + 
Sbjct: 206 IVDSMIHSVTRLARVVDNLSDFASLQAGESPIMEGAVNPDQLADEVVAEQRPMIRDARLH 265

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V   G     +AD ++L Q  + I+SNA+ FS  G  V+++  R  G   ++V + G 
Sbjct: 266 VVVAHAGGE-PVIADPRKLRQAIANIVSNAVKFSPHGGEVLVEVTRQPGKLRYTVYDQGP 324

Query: 729 SIPEDMCKSVFNRFVSNAHRG----QRRGVGLGLSIVESFINLHGGHVSISSS 777
            I     + +F        RG    +  G GLGL +       HGG V + S 
Sbjct: 325 GIRSLEQERIFEPLHHARARGTDEARLPGSGLGLPVARRIAEAHGGRVWVESP 377


>gi|71907262|ref|YP_284849.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71846883|gb|AAZ46379.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 903

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E NE LR+ D +K+ F+  V++ELR+PLT+I   +++L       L  +  +++  I 
Sbjct: 661 LREANERLRELDRMKDDFISTVTHELRTPLTSIRALSEMLHEDPRLELVERM-RFLGIIV 719

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
             +  L  L+N ILD+A +++G  +     + L ++  E   S+     +  + ++  I 
Sbjct: 720 GEAERLTRLINQILDMAKLESGRAEWTTGEVDLGEIARETMDSVGQLFRDKGVLLEGDIP 779

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           DG  G  V ADR RL Q+   +LSNA+ F   +   V +K   D       V++NG  + 
Sbjct: 780 DG--GPIVLADRDRLTQVLINLLSNAVKFVPGELGCVQVKIGVDGNMVRVEVRDNGPGLT 837

Query: 732 EDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTI-NCR 787
            + C+ +F +F    N   G+ +G GLGL I    I   GG + + S   EG   I    
Sbjct: 838 AEECEVIFEKFRQGGNTLTGKPKGTGLGLPISRQIIEYFGGKLWVESHPGEGANFIFTVP 897

Query: 788 IPSKE 792
           +P+ E
Sbjct: 898 LPASE 902


>gi|320160300|ref|YP_004173524.1| two-component hybrid sensor and regulator [Anaerolinea thermophila
           UNI-1]
 gi|319994153|dbj|BAJ62924.1| two-component hybrid sensor and regulator [Anaerolinea thermophila
           UNI-1]
          Length = 1087

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTD--LLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +A+++K   + +V +E+R+PL  I+G+    L +  + G  +++  + ++ IS S   LL
Sbjct: 475 RANQLKTRLLANVGHEMRTPLNVILGYAQSALNRHKRSGHHDTELERDLQIISQSGEHLL 534

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSF 680
            ++ND+LDL+  + G + + +  +    ++ E  ++ A    +N  IR +V    +L   
Sbjct: 535 RMINDLLDLSRAEIGALNMYFEWMDPRPIILEAFETFARSEEQNPFIRWRVEIPERLPII 594

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  RL QI   +LSNA  F+ +G  ++L A  +      SV + G  I  +  + +F 
Sbjct: 595 QADSARLKQILLNLLSNARKFTHEGE-IVLSAHVEPPFLRLSVADTGEGISLEQQERLFE 653

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F  +A  G+RR  G+GLGLSI    I LHGG +++ S     +T    +P
Sbjct: 654 PF--SASMGKRRPSGIGLGLSITRHLIALHGGTLTLESQPGKGSTFYIYLP 702


>gi|302764822|ref|XP_002965832.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii]
 gi|300166646|gb|EFJ33252.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii]
          Length = 229

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 16/211 (7%)

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+P+  IIG  D+L      +L  +Q   V  I   +T LL++VN++LD++ V+AG
Sbjct: 5   SHELRTPMAGIIGMLDILSCD---TLTPEQETSVGQIRRCATGLLSMVNNVLDISKVEAG 61

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKIL 695
            M L+ +   L   L  +    A + +  ++ + + +SD    +   D  R+ QIFS +L
Sbjct: 62  KMDLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIPQALKGDACRIRQIFSNLL 121

Query: 696 SNAMDFSSKGSTVI-------LKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSN 745
           SN+M F+  G  VI        + + D   F   IF V + G  IP  M ++VF+ FV  
Sbjct: 122 SNSMKFTENGHIVIRGWADEKPEISSDGPSFINLIFEVDDTGCGIPSHMHETVFDSFVQA 181

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                R   G GLGL IV S +   GG V +
Sbjct: 182 DASSTRIHGGSGLGLYIVRSLVQKMGGEVQV 212


>gi|302802654|ref|XP_002983081.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii]
 gi|300149234|gb|EFJ15890.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii]
          Length = 229

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 16/211 (7%)

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+P+  IIG  D+L      +L  +Q   V  I   +T LL++VN++LD++ V+AG
Sbjct: 5   SHELRTPMAGIIGMLDILSCD---TLTPEQETSVGQIRRCATGLLSMVNNVLDISKVEAG 61

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKIL 695
            M L+ +   L   L  +    A + +  ++ + + +SD    +   D  R+ QIFS +L
Sbjct: 62  KMDLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIPQALKGDACRIRQIFSNLL 121

Query: 696 SNAMDFSSKGSTVI-------LKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSN 745
           SN+M F+  G  VI        + + D   F   IF V + G  IP  M ++VF+ FV  
Sbjct: 122 SNSMKFTENGHIVIRGWADEKPEISSDGPSFINVIFEVDDTGCGIPSHMHETVFDSFVQA 181

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                R   G GLGL IV S +   GG V +
Sbjct: 182 DASSTRIHGGSGLGLYIVRSLVQKMGGEVQV 212


>gi|288940785|ref|YP_003443025.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896157|gb|ADC61993.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1053

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + E    A   K++F+ ++S+E+R+P+  I+G T LL+        + Q++ +  I 
Sbjct: 433 LAHRAELAESATRAKSAFLANMSHEIRTPMNAILGLTHLLRRD---GATATQNERLGKIE 489

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +++  LL ++NDILDL+ +++G ++L  +   L  LL++V+  +A       + + + S 
Sbjct: 490 SATRHLLAILNDILDLSRIESGRLQLEDADFALESLLDQVRSLVADAAQSKGLTLSIEST 549

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI-FSVKNNGSSI 730
           G       D  RL QI     SNA+ F+ +GS V+     A  D+G  + F V + G  I
Sbjct: 550 GLPRWLHGDVTRLRQILLNYASNAVKFTERGSVVLRARPVAEDDSGVLVRFEVADTGIGI 609

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +   S+F  F        RR  G GLGL+I      L GG     S+
Sbjct: 610 APEQLASLFRAFSQADSSTTRRYGGTGLGLAINMQLAQLMGGETGAEST 658


>gi|226315262|ref|YP_002775158.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226098212|dbj|BAH46654.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 369

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 129/250 (51%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            V DS+ A  ++  +  E  R+ ++ K+  + +VS++LR+PLT+IIG+  L++ +K    
Sbjct: 117 QVVDSIHALVKSALDAMEEERRLEQSKDELITNVSHDLRTPLTSIIGYLGLIEQNK--HK 174

Query: 603 NSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           + ++ ++  +I+      +N LVND+ +   V      L  +   L +L+ +V       
Sbjct: 175 DEEKFKHYAHIAYEKAKQMNVLVNDLFEYTKVRNRGAYLKRTQFDLVELVEQVSVGFRLV 234

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +E  +R+ V +  +      D  +L+++   ++SNA+ +   G+ +I++          
Sbjct: 235 ANEAGLRLIVDTPDQKIEMAGDTDKLVRVLENLISNAVKYGHDGTEIIIRVFCQGEGVAI 294

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV NNG+ IP +   S+F RF  V  +   +  G GLGL+I +S I+LH G +S  S+ E
Sbjct: 295 SVANNGAPIPAEYVPSLFERFFRVEGSRSKETGGSGLGLAIAKSIIDLHQGSISAESTSE 354

Query: 780 GVTTINCRIP 789
             TT    +P
Sbjct: 355 W-TTFTVWLP 363


>gi|168184843|ref|ZP_02619507.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237793673|ref|YP_002861225.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182672106|gb|EDT84067.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229263106|gb|ACQ54139.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 464

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D++KN F+  VS+ELR+PLT+I G+   L ++++     K    ++ I   S  L  +
Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G MKLN   I + ++++ V++ +    + N I  K     KL +   D
Sbjct: 297 VEELLDFSKFVSGKMKLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R R+ Q+   +L NA  F+ +G  V L    +       VK+ G  I ++    V  +F 
Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELNTKCEEEYITIVVKDTGVGINKEDLPRVKEKFY 416

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G+ +  G+GLSI +  I LH G + I S +   TTI+ ++P
Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISVKLP 460


>gi|187920903|ref|YP_001889935.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
 gi|187719341|gb|ACD20564.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
          Length = 721

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 11/244 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AER      EA   A+  K  F+ ++S+ELR+PL  I+G+  +L+     +L+ +Q +  
Sbjct: 248 AEREARNLAEA---ANRAKGEFLANMSHELRTPLNGILGYAQILERD--AALSERQRERA 302

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669
             I  S   LL L+ D LD A ++AG +++    + L   ++ ++  I  K  +  +   
Sbjct: 303 SSIRHSGEHLLTLIEDTLDFARIEAGKLRVEIGDVPLAGFVDVIRDIIDVKAEQKRLDFI 362

Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            ++  D  +G   AD +RL Q+   +L+NA+ F+  G   +  +  ++    F V++ G 
Sbjct: 363 CEITGDAPVG-VRADERRLRQVMLNLLANAVKFTDSGCVTLHISRSESNRVRFEVRDTGI 421

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D   ++F  F       +RR  G GLGL+I   F+   GG + + S     +T   
Sbjct: 422 GIGHDQLNTIFEPF-EQLGAAERRAGGAGLGLAISREFVRAMGGEIEVESRIGQGSTFRF 480

Query: 787 RIPS 790
            +P+
Sbjct: 481 ELPA 484


>gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1021

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 12/246 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T +++T   R E+ L        +A  +K+ F+ ++S+E+R+P+ ++IG  DLL TS+L 
Sbjct: 518 TSLDITQRQRLEQELQRARAEAIEASRVKSQFLANLSHEIRTPIASVIGLIDLLSTSELS 577

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +++  +  ++A    L ++VND+LDL+ ++AG M L +S      ++      +A 
Sbjct: 578 EAEREETTSLLRLAAEH--LSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAI 635

Query: 661 KMHENNIRIKV----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--- 713
           +     I + +     S+    S   D  RL QI   ++SNA+ FS +G  V ++     
Sbjct: 636 QARARGIELVMEPLDQSEPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRI 695

Query: 714 -RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             D+   +  V + G  I  D  + +F  +       QRR  G GLGL+I        GG
Sbjct: 696 EEDSRWLVIDVVDQGIGIAPDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGG 755

Query: 771 HVSISS 776
            + + S
Sbjct: 756 ELHVRS 761


>gi|157376076|ref|YP_001474676.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3]
 gi|157318450|gb|ABV37548.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3]
          Length = 1169

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 125/261 (47%), Gaps = 13/261 (4%)

Query: 526 LEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  +IP+   + +L   FV +++  +  E  L +  +      + K+ F+  +S+E+RS
Sbjct: 453 VEMKMIPVQLGEEILLTAFVHDISKRIEYETQLKQAKDQAESGSKAKSRFLATMSHEIRS 512

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++G  +L+  SKL   N +Q  Y      + T LL+ +NDILD + ++AG M L  
Sbjct: 513 PLNAVLGSVELMLDSKL---NKEQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMMLES 569

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
            +     ++ +V + +A   HE  I +    +  +   V  D QRL Q+   ++ NA+ F
Sbjct: 570 VSFSPAKIVAQVLRILAPNAHEKGINLACFINRNVPELVKGDPQRLRQVIHNLVDNAIKF 629

Query: 702 SSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           SS G       I  +  +      +V + G  +     K +F  F  V + H    +G G
Sbjct: 630 SSGGCVSVEMWIPDSHHEEVQLYCAVTDEGIGVSMAAQKKLFKEFSQVHDQHNTNYKGSG 689

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I    I + GG + +SS
Sbjct: 690 LGLAICAELIEMMGGKIELSS 710


>gi|71735914|ref|YP_273056.1| response regulator/sensor histidine kinase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556467|gb|AAZ35678.1| response regulator/sensor histidine kinase [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 762

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 128/255 (50%), Gaps = 10/255 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +V+VT++      L++  +A  +A   K+ F+  +S+E+R+P+  I+G  +LL +    S
Sbjct: 154 WVDVTEAREKSLKLSQAKDAAEEAAHAKSQFLATMSHEIRTPMNGILGLLELLHSK---S 210

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           ++  Q Q +  I  S+  L+ ++ND+LDL+ ++   ++L+     L  L++ V   +A +
Sbjct: 211 MSPDQQQIMLMIDESAKSLMTVLNDVLDLSKIEFNQLELHRQPTDLRALISSVVGIMAHQ 270

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
            H   +R+++     L S V  D  RL Q+   +LSNA+ F++ G+  I  A   + D  
Sbjct: 271 AHAKGLRVRITISPALASSVEVDDMRLRQVLLNLLSNAIKFTAVGTVSIKVAVTRSSDTT 330

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                SV + G  + +   + +F  F        R   G GLGL I +  I L GG +++
Sbjct: 331 QHLAISVIDTGLGMSDSQRERIFEPFTQGDASITRSYGGSGLGLVISQHLIRLMGGELAL 390

Query: 775 SSSDEGVTTINCRIP 789
            + +   T +   +P
Sbjct: 391 ETEEHVGTNVTVVLP 405


>gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1245

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 12/242 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           ++T    AER +    E   +A + K+ F+ ++S+E+R+P+  IIG + L L+T     L
Sbjct: 407 DITTRRAAEREILRAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLALQTE----L 462

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + KQ  Y+  I  ++  LL ++NDILD + ++AG + +     +L+D L  +   IA K 
Sbjct: 463 SRKQQDYINKIHNAANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLTNLIAVKA 522

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
            E  + + +  D  +    + D  RL QI   +++NA+ F+  G  V+ +K    N   +
Sbjct: 523 REKGLELLIAMDPAVPDGLIGDDLRLGQILVNLVNNAVKFTDTGEIVVRVKQVEANDREV 582

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              FS+ ++G  + E     +FN F        R+  G GLGL+I +    +  G + + 
Sbjct: 583 MLQFSISDSGIGMTEAQVAKLFNSFSQADASTTRKYGGTGLGLTISKKLTEMMHGKIWVE 642

Query: 776 SS 777
           S+
Sbjct: 643 ST 644


>gi|312127495|ref|YP_003992369.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777514|gb|ADQ07000.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 467

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN         +++ + +   +TEK E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    ADR  + ++   +L NA+ ++  G  + +
Sbjct: 327 IAEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF   +  R    GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGV 781
            ++ +  S+EGV
Sbjct: 446 QNIWV-ESEEGV 456


>gi|295688289|ref|YP_003591982.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430192|gb|ADG09364.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 565

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++FV  +S+ELR+P+  ++G    L T++L   + +Q++YV+ I  S   L+ ++NDIL
Sbjct: 200 KSAFVAMMSHELRTPMNGVLGLAHALSTTRL---DVRQAEYVDMIIQSGDGLMTILNDIL 256

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRL 687
           DL+ ++AG ++L  +   +  L  +++   +       + + +  D    ++ + D  R+
Sbjct: 257 DLSKIEAGKLELEIAPFDIRALAGQIRLLWSETARGKGVELALEVDPATPAWLLGDAARV 316

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   ++SNA+ F+  G  VI   A   G+ + SV + G  +  +    +F  F     
Sbjct: 317 RQILMNLVSNALKFTLAGRVVI-GVAPAEGEIVLSVTDTGVGLTAEQRARLFAPFAQGDR 375

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              RR  G GLGL+I      L GG + + S     +T   R
Sbjct: 376 STARRFGGTGLGLAICRHLAELMGGAIGVESEPGVGSTFTVR 417


>gi|323528813|ref|YP_004230965.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385815|gb|ADX57905.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 882

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 5/232 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           ALR+ D  K+ F+  +++ELR+PL  +     LL+  +  ++NS   + V  +S     +
Sbjct: 500 ALRETDRRKDEFLAMLAHELRNPLAPMRNAIALLRRERESAMNS--CELVGMLSRQVDHM 557

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV+D+L+++ +  G + L    ++L   +    +++++        + V         
Sbjct: 558 AQLVDDLLEVSRITHGRIVLRREPVLLGTAIYGALETVSSMAASRGQHLTVKLPPAPVWL 617

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  RL QIF  +L+NA  ++  G +V + A  D      ++++NGS I  D+   +F+
Sbjct: 618 HADPLRLSQIFVNVLNNACKYTDPGGSVCVTALADERFAAVTIEDNGSGISPDLLPHIFD 677

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            F        R   G+G+GLS+V+  + LHGG + I+S   G   T++ R+P
Sbjct: 678 LFAQGERTLDRAHGGLGIGLSLVKKLVELHGGTIDIASPGPGRGATVSIRLP 729


>gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
 gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
          Length = 1045

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 126/253 (49%), Gaps = 13/253 (5%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
           Q  +   +VT     E+ L E      +A EIK+ F+ ++S+E+R+P+  IIG + L LK
Sbjct: 266 QAAMFLRDVTVRKAVEQELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALK 325

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T     L++KQ  YV  I +S+T+LL ++NDILD + ++AG + +      L+++L+ V 
Sbjct: 326 TE----LSAKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIERIEFSLDEVLHNVS 381

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712
                K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G  S  +   
Sbjct: 382 MVTGQKAFDKGLELLFSLPREIPRKLIGDPLRIGQVVINLVNNAVKFTEQGEISVNVQVG 441

Query: 713 ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            R  G     F V + G  + E   + +F  F        R+  G GLGLSI    + L 
Sbjct: 442 ERQTGRIQLQFHVMDTGIGMTEKQTRHLFQAFTQADGSTTRKYGGTGLGLSISRRLVELM 501

Query: 769 GGHVS-ISSSDEG 780
            G +S IS  +EG
Sbjct: 502 EGEISVISQPEEG 514


>gi|197334363|ref|YP_002156093.1| sensor protein LuxQ [Vibrio fischeri MJ11]
 gi|197315853|gb|ACH65300.1| sensor protein LuxQ [Vibrio fischeri MJ11]
          Length = 692

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T K EA  KA++ K+ F+  +S+E+R+PL +I+G  D+   S L   + +Q  ++  + +
Sbjct: 316 TAKTEA-EKANKAKSQFLAMMSHEIRTPLNSILGLVDIFHGSLL---SEEQLDWLNQMES 371

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS +LL +++D+LD++ ++AG   LN   I L   LN     + T+  +  I + V +  
Sbjct: 372 SSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAKDKGITLTVTASQ 431

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +  +V AD  RL Q+   ++ NA+ F++ G   +      N     SV + G  I    
Sbjct: 432 NVPKYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSISISVSDTGIGIASTT 491

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + +F  FV       R+  G GLGL+I++  + L  G +++ S     +T    +P KE
Sbjct: 492 LEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLNVGSTFKITLPLKE 551


>gi|160894156|ref|ZP_02074934.1| hypothetical protein CLOL250_01710 [Clostridium sp. L2-50]
 gi|156864189|gb|EDO57620.1| hypothetical protein CLOL250_01710 [Clostridium sp. L2-50]
          Length = 897

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 129/240 (53%), Gaps = 6/240 (2%)

Query: 557 EKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           EK EA  L + ++++ + ++ +S++LR+PLT I G  D L  +     ++ + Q    I 
Sbjct: 655 EKEEAAVLAQNEQLRANLLRAISHDLRTPLTAISGSADNLLANYKKMDDALREQTFTDIY 714

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L+NLV ++L +  ++ G + L  S  +++++++E  + I  K  E+ IR+    D
Sbjct: 715 DDSMWLINLVENLLAVTRIEGGQVNLTRSIELMDEVVSEALKHINRKSKEHTIRVTSGKD 774

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L   + D + ++Q+   ++ NA+ ++  GS + +   +       SV +NG  IP++ 
Sbjct: 775 FILA--LIDAKLIVQVIINLVDNAIKYTPVGSVIEIHTDQKEQWVTVSVSDNGPGIPDEQ 832

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F+ F S A++    RR +GLGLS+ +S +  HGG +S+S +    T     +P++E
Sbjct: 833 KPRIFDMFYSGANKVVDSRRSLGLGLSLCKSIVTAHGGTISVSDNQPNGTAFKFTLPAEE 892


>gi|59714199|ref|YP_206974.1| two component sensory histidine kinase [Vibrio fischeri ES114]
 gi|59482447|gb|AAW88086.1| two component sensory histidine kinase [Vibrio fischeri ES114]
          Length = 864

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 10/246 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L  + E    A++ K +F+ ++S+E+R+PL  IIG + +L  +KL  +   Q  Y+ 
Sbjct: 340 EKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKLTPI---QLDYLN 396

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  LL L+NDILDL+ ++AG   +      + +++ +       K  E N+ + +
Sbjct: 397 TIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSIDIAKATEKNLDLHI 456

Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNN 726
                + +F+  D  R+ QI   + SNAM F+ KG    S        + G    +VK++
Sbjct: 457 HISPDVPNFLTLDEHRVKQILMNLTSNAMKFTHKGFISISVNFSHRVENEGYLTIAVKDS 516

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +  +++ N F+       RR  G GLGL+I    I L GG + I S  E  +  
Sbjct: 517 GIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGGTLDIESEQEKGSRF 576

Query: 785 NCRIPS 790
           + RI +
Sbjct: 577 SFRIKT 582


>gi|330859215|emb|CBX69566.1| signal transduction histidine-protein kinase barA [Yersinia
           enterocolitica W22703]
          Length = 976

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + ++       
Sbjct: 342 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G  I E    
Sbjct: 402 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT--------INC 786
            +F  F        RR  G GLGL I E  +   GG +S  S  E  +T        +N 
Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHLTLDLNE 521

Query: 787 RIPSK 791
            IPS+
Sbjct: 522 AIPSR 526


>gi|260843241|ref|YP_003221019.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O103:H2 str. 12009]
 gi|257758388|dbj|BAI29885.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O103:H2 str. 12009]
          Length = 914

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|229156832|ref|ZP_04284919.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342]
 gi|228626752|gb|EEK83492.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342]
          Length = 448

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  + +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWRDKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|149182950|ref|ZP_01861407.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148849342|gb|EDL63535.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 466

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 566 DEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +E++NS   F+Q+VS+ELR+PL+ + G+T+ +    + +   ++ +Y+  I   +  L  
Sbjct: 233 EEVENSRREFLQNVSHELRTPLSYMRGYTEAM-LEGMTTSGEEREKYLRIIHNETARLTR 291

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LVND+LDLA ++     +    I    L+ +V +       + +I + +  D ++     
Sbjct: 292 LVNDLLDLAQLEGESYPMRKEPIPFAQLVMDVTERFKFHAEQKHIHLGLQLDEEV-IIEG 350

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+ S +L NA+ ++ +   V+++  +++   + +VK+ G  IPE+  +++ +RF
Sbjct: 351 DADRLEQVISNLLDNAIRYTPEAGEVMMELKQNDHLAVLTVKDTGCGIPEEDLENIMDRF 410

Query: 743 VSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
               H+ + R   G GLGL+IV+  +  HGG + + S     T+I+ 
Sbjct: 411 Y-RVHKPRTRNEGGFGLGLAIVKQIVWKHGGTIDVQSQPGKGTSISL 456


>gi|28881238|emb|CAD70476.1| related to two-component histidine kinase chk-1 [Neurospora crassa]
          Length = 2177

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 15/221 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1483 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1539

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKLNY       L+ +V + ++T      + +  + +  + ++V
Sbjct: 1540 MIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1599

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI--------FSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F+++G      K    N   +        FS+ + G    
Sbjct: 1600 KGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKVVVPNHGHLYENEIMLEFSIIDTGRGFT 1659

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
            E+  + +F  F  +  +   Q  G GLGL I    + LHGG
Sbjct: 1660 EEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1700


>gi|239905559|ref|YP_002952298.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
 gi|239795423|dbj|BAH74412.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 2025

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 136/254 (53%), Gaps = 11/254 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +VT   +AE A+ E   A   A+  K+ F+ ++S+E+R+PL  ++G   LL ++   +L+
Sbjct: 1623 DVTLRKQAETAMLEAKNAAEAANRAKSEFLANMSHEIRTPLNGLLGMLQLLHST---TLD 1679

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++Q +Y +    +   L  L++DILDL+ ++AG + +  +   L +++  ++++ A    
Sbjct: 1680 AEQEEYAQMAIRAGNRLTRLLSDILDLSRIEAGRLPIVAAPFRLANVVQALRETFAPFCK 1739

Query: 664  ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNG 717
            E  +++   ++  L  + V D  R+ QI   ++ NA+ FS+ G  ++  +     A  + 
Sbjct: 1740 EKRLQLVFETEAALPEWLVGDELRIRQILFNLVGNALKFSTNGDVLVTMSRLPGVAAKHA 1799

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              +F+V +NG  IP+D   SV   F+    ++   ++G GLGL+I +  ++L  G +++ 
Sbjct: 1800 RILFTVADNGIGIPDDKLDSVCEPFIQAEGSYTRSQQGAGLGLTITKRLVDLMHGTMALE 1859

Query: 776  SSDEGVTTINCRIP 789
            S     TT    +P
Sbjct: 1860 SEAGVGTTAYVTLP 1873


>gi|224540583|ref|ZP_03681122.1| hypothetical protein BACCELL_05497 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517833|gb|EEF86938.1| hypothetical protein BACCELL_05497 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 877

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 13/239 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++ +  L + +  L +A   K  F  +VS++ R+PLT I    + L   K  SL     Q
Sbjct: 350 IQQKEQLEQLSRELEEATHAKLVFFTNVSHDFRTPLTLIADPINQLLADK--SLGEHPHQ 407

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHEN 665
            +E +  ++ ILL LVN ILD   V+ G M+L+       DLL+  +    S    + + 
Sbjct: 408 LLELMKKNANILLRLVNQILDFRKVENGRMELHLEPF---DLLSSFRGWNDSFRMALLKK 464

Query: 666 NIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +I    +V  D      +AD +++ +I+  +LSNA+ ++ +   +++K   +  ++ FSV
Sbjct: 465 HISFSFEVTPDTDF-RMMADSEKMERIYFNLLSNAVKYTPENGKIVVKLEAETTNYRFSV 523

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            N+GS I      ++F RF      G + G G+GL++V +F+ +HGG ++  S+++G T
Sbjct: 524 FNSGSHISPKEVDAIFERFYQ--IDGHQAGTGIGLALVRAFVEMHGGQITAHSNEKGAT 580


>gi|300694191|ref|YP_003750164.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
 gi|299076228|emb|CBJ35542.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
          Length = 675

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 131/266 (49%), Gaps = 10/266 (3%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           II L NA   +T     ++ RA+   A +   E   +A  +K+ F+  VS+ELR+PL  +
Sbjct: 257 IIGLTNAVIDITERRQAEARRAQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAV 316

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  LL          ++   +E I  S+   ++L++D+LD++ + +G + L    + L
Sbjct: 317 LGWAQLLAMRPYDEATFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDL 374

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            D+L   +++I     +  I + +     +     D  RL Q+F  +L+NA+ F+ +G  
Sbjct: 375 ADVLERARETIEPMARQKQIAVDMECQ-PVPLLQGDAGRLKQVFWNLLANAVKFTPEGGH 433

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           + +         + +V++ G  I       +F+RF        RR  G+GLGL+I +  +
Sbjct: 434 IRVSVHASAEGLVATVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLV 493

Query: 766 NLHGGHVSISSS--DEGVTTINCRIP 789
            LH G ++ +SS  D G TT+   +P
Sbjct: 494 ELHHGRITAASSGTDLG-TTMAVTLP 518


>gi|160889978|ref|ZP_02070981.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270294654|ref|ZP_06200856.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481371|ref|ZP_07940439.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860366|gb|EDO53797.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270276121|gb|EFA21981.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902467|gb|EFV24353.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 497

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 123/226 (54%), Gaps = 14/226 (6%)

Query: 559 NEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           NEAL+KA   DE+K+ F+ ++S+E+R+PL  I+GF+ LL          +  ++   I  
Sbjct: 262 NEALQKAQRSDELKSVFLANMSHEIRTPLNAIVGFSTLLACGDADLSRQEIMEFTSLIEK 321

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVIS 673
           +S +L+ L++DILDL+ +++  M+ ++  + LN +L  +    A KM   N+R  ++++ 
Sbjct: 322 NSQLLMVLISDILDLSKIESNTMEFHFEKVSLNGILESIYS--AQKM---NLRKGVELLL 376

Query: 674 D--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           D   +      D  RL Q+ + +++NA+ F+++G   I    +D       V++ G+ + 
Sbjct: 377 DLPDRAAVIYTDPTRLGQVVNNLINNAVKFTAEGRITIGYRLKDFATLEVFVEDTGTGMS 436

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           E++   +F RF       Q  G GLGL+I  + +    G + ++S+
Sbjct: 437 EEVLAHIFERFYKGDAFVQ--GTGLGLAICRTIVERFHGKIEVAST 480


>gi|86747539|ref|YP_484035.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris HaA2]
 gi|86570567|gb|ABD05124.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 649

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+  +   S+E+R+PL  IIG + LL  +   +L  +Q+ Y   +  S   L  L++++L
Sbjct: 133 KSRLLAMASHEIRTPLNGIIGMSGLLLDT---ALTPEQATYARAVKTSGDALATLIDELL 189

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D + ++AG  +L+     L  L+ ++ + +A +     + I    D ++ S  + D  RL
Sbjct: 190 DYSRIEAGRFELDSRPFALTALIEDIVELLAPRAQAGALEIAADIDDRVPSRVIGDAARL 249

Query: 688 LQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+   +  NA+ F+S G  V I++    +G+  F+V++ G  I  +    +F  F   A
Sbjct: 250 RQVLLNLAGNAIKFTSVGGVVLIVQPGERDGEISFAVRDTGIGIAREAQTRIFGEF-EQA 308

Query: 747 HRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G  R   G GLGLSI +  +   GG +++ S     +T    IP
Sbjct: 309 DDGIARSFGGTGLGLSISQRIVERMGGRIALDSQPGRGSTFTASIP 354


>gi|114565156|ref|YP_752670.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114336449|gb|ABI73831.1| Hpt sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
           400]
          Length = 782

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 10/233 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E  +KA + K+ F+  +S+E+R+PL  I+GF+DLL + K   LN + S  V+ I+
Sbjct: 262 LQQTLEIAKKASQAKSEFLAVMSHEIRTPLNGIVGFSDLLTSFK---LNKEVSNTVQMIN 318

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VIS 673
            S+  LL L+N++LD +  DA  M L+  T  L DL+     S      +  +  + VIS
Sbjct: 319 ESAQTLLVLLNEVLDFSKADANKMDLDIKTFNLPDLVTSTCHSHKVSAGKKGLDFEVVIS 378

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--FIFSVKNNGSSI 730
                +++ D  R+ QI +  +SNA+ F+ +G+ ++ +    +  D    F+VK+ G  I
Sbjct: 379 PLSHENYLGDAVRVRQIINNFVSNAIKFTRQGAISIAVSEHMEASDTYITFTVKDTGIGI 438

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780
                +S+F  F+       R   G GLGL+I +  + L  G   + S+ DEG
Sbjct: 439 AASKLESIFTPFMQADSTITREFGGTGLGLAICQQLVVLMNGRYGVESTLDEG 491


>gi|298250724|ref|ZP_06974528.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297548728|gb|EFH82595.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 757

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 180/403 (44%), Gaps = 53/403 (13%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETID----HLSEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +V DL  K +   + +  T+D     ++EG+ +  PDG I  +N  F 
Sbjct: 349 GQVIAAFSAMEDEVHDLFRKSDATSQARLYTLDAIMHSMNEGLLLEAPDGHIIYANQRFT 408

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
                  N L P              ++E    D   ++I   D  ++++          
Sbjct: 409 QFVGLSPNDLLPPI------------FDEHKAQDALLSLIEDPDVYQQAVYAAETRSGPD 456

Query: 525 VLEYSI----------IPLPNAQTMLTFVNVTDSVRAE-------RALTEKNEALRKADE 567
           V+E+ +          IP+  A  +  F  V D   A        + +T  NEA    + 
Sbjct: 457 VIEFYVRGYHNPIGQYIPVRRAVRLRVF-QVRDQADALIGRGKVFQDVTRTNEA----EL 511

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK + +  VS+ELR+PLT+I G+   L  + +   ++ Q  ++  I   +  +  LV  +
Sbjct: 512 IKKNLLAIVSHELRTPLTSIKGYATSLLETDVEMESAIQEDFLRGIVIETDRMAELVTSL 571

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ ++AG +KL+     L+ L   +K ++  +  E  +RI++     L     D +R+
Sbjct: 572 LDMSQIEAGTLKLSSGLYPLDVL---IKHALPEQERE-KVRIRLPVKPSL--IDVDGKRI 625

Query: 688 LQIFSKILSNAMDFSSKGS--TVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNR 741
             +   +L NA  ++   +   ++++  +++G+       SV +NG+ IP D+ + +F R
Sbjct: 626 EMVLRNLLQNARRYAGADALIEIVVRYEQEDGEVKGGLYLSVIDNGAGIPADLTERIFER 685

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           F  V +  R    GVGLGL+I   FI  HGG +   +  +G T
Sbjct: 686 FYQVDSGRRRSSSGVGLGLAICRGFIEAHGGRIWAENRADGAT 728


>gi|298481290|ref|ZP_06999483.1| two-component system histidine kinase [Bacteroides sp. D22]
 gi|298272494|gb|EFI14062.1| two-component system histidine kinase [Bacteroides sp. D22]
          Length = 513

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 230/507 (45%), Gaps = 53/507 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           KE+    Q  +  E+L+ L   + IFD N   +Q + ++F EL          +PS +++
Sbjct: 13  KEMEDYKQTLYNDELLNILPDGVIIFDTNGEVIQLNQQAFAEL--------HVHPSVNDM 64

Query: 356 LEFLRSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG- 411
           L F    N+L + LN K   E+I S + +     ++T+ LP    +   V  T  P  G 
Sbjct: 65  LPF--PTNRLFKLLNKK---EDILSTILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGE 119

Query: 412 ------------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI--K 457
                        ++ F N+TV++  E   NT ++       +     + F  D R    
Sbjct: 120 FATIRDRTNLNKILFFFRNITVELTQEYILNTALQRTRIYPWYYDISRSEFTLDDRYFEH 179

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----ERKS 513
           L  PA       E N L+   ++  I     +    +D + +  +  T+FD       + 
Sbjct: 180 LGIPA------GENNTLTMEEYVNMIHPDDRQPM--ADAFVVQLSGNTTFDKTVPFRLRR 231

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             GT E         + I     + +   +++ +    E  L E  +   ++D +K +F+
Sbjct: 232 GDGTWEWFEGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFL 291

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++DILDL+ +
Sbjct: 292 ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDILDLSKI 351

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++  +K  +S   LN L+ ++++  A K   + I IK +   +      D  RL Q+   
Sbjct: 352 ESNTIKFTFSNCSLNSLMMDIEKEQAMKPI-SEIEIKSLLPDEDVYINTDITRLKQVICN 410

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDF----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            ++NA  F+ KG  +      DN +     IF V++ GS IP++    +F+RF       
Sbjct: 411 FINNARKFTQKGY-IHFGYTLDNRNADSVQIF-VEDTGSGIPQECLNEIFDRFYKVDTFK 468

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS 776
           Q  G GLGLSI ++ +    G +S+ S
Sbjct: 469 Q--GTGLGLSICKTIVEHLQGDISVKS 493


>gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1287

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 131/260 (50%), Gaps = 23/260 (8%)

Query: 529 SIIPLPNAQTMLT-FV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           SI P+ +    +T FV    ++T+S R    L    E     +  K+ F+ ++S+E+R+P
Sbjct: 620 SISPIRDDHGRITHFVAVKEDITESRRIADELRRAKEEAEAGNRSKSEFLANMSHEIRTP 679

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIGF  L   ++   L ++Q  Y+  ++ ++T LL ++N+ILD + ++AG ++  ++
Sbjct: 680 LNAIIGFNTLALETQ---LTAQQHDYLSRVNFAATSLLRIINEILDFSKIEAGKLEFEHA 736

Query: 644 TI----VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNA 698
                 VL +++N  +Q  A K     + +++  SD      V D  RL Q+   ++ NA
Sbjct: 737 VFNPREVLQNIINLFQQQAAHK----GLSLELHCSDNLPAELVGDSVRLGQVLVNLVGNA 792

Query: 699 MDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + F+ +G+  +  +  + G       FSV++ G  +  D    +F  F        R+  
Sbjct: 793 VKFTEQGAVSLYASPTEYGCENVTLEFSVRDTGIGLAPDKLTKLFQPFTQADGSITRKFG 852

Query: 753 GVGLGLSIVESFINLHGGHV 772
           G GLGLSI +  + L GGH+
Sbjct: 853 GTGLGLSISKRIVELTGGHI 872


>gi|109900048|ref|YP_663303.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           atlantica T6c]
 gi|109702329|gb|ABG42249.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 781

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 13/247 (5%)

Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +A   + KA + K  F+  +S+ELR+PL  I+G + +L+ +K   L+ +Q  +
Sbjct: 267 RDITERKQAENIVAKASKDKTKFIATISHELRTPLNGIVGLSRMLRDTK---LDKEQFAW 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I AS   L N+ NDI+D+  +    ++L+  T+ + D   E+   I     +  +  
Sbjct: 324 VSTIYASGITLGNIFNDIIDIDRMGRDKLELSLKTVSIKDFTEELSSIIKLLAADKGLAF 383

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVK 724
                  L  FV  D  RL QI   +L NA+ F+ KG   +   A+ +GD I    F V 
Sbjct: 384 DTEIREPLPDFVEVDGTRLRQILWNLLFNAVKFTQKGKVSLSVEAQTSGDGISHVTFRVG 443

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP+     +F  +  V+        G G+GL+I +  ++L  G + +SS     T
Sbjct: 444 DTGVGIPQTELDKIFAMYYQVNLPEHQSATGTGIGLAICQQMVSLMNGEIKVSSEIGKGT 503

Query: 783 TINCRIP 789
             +  +P
Sbjct: 504 CFSVELP 510


>gi|134291304|ref|YP_001115073.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134493|gb|ABO58818.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 745

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 16/266 (6%)

Query: 526 LEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVS 577
           L ++  PL +    +++ V VT+ V A   L   N         LR A++ K+ F+  + 
Sbjct: 316 LHFNPQPLADGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLG 375

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT I    +L++              +  I      ++ L++D+LD++ +  G 
Sbjct: 376 HELRNPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGK 431

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + L    + L D+++   +  +  + +   R+ V +D +      D  RL Q+ + +L+N
Sbjct: 432 ITLKKEAVRLADIVDRAVEVASPLLEQRRHRLHVDTDPEARCH-GDPVRLSQVVANLLTN 490

Query: 698 AMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           A  ++  G  + + A R  +G  +  V +NG+ IP D  +S+F  F  +   ++    G+
Sbjct: 491 AAKYTLPGGDIAVHAQRGADGSTLIEVHDNGAGIPPDRLQSIFEPFYRIDGDNKQAHGGL 550

Query: 755 GLGLSIVESFINLHGGHVSISSSDEG 780
           G+GL++V S +NLHGG V   S+  G
Sbjct: 551 GIGLALVRSLVNLHGGTVRADSAGPG 576


>gi|149201429|ref|ZP_01878404.1| hypothetical protein RTM1035_17427 [Roseovarius sp. TM1035]
 gi|149145762|gb|EDM33788.1| hypothetical protein RTM1035_17427 [Roseovarius sp. TM1035]
          Length = 510

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/447 (21%), Positives = 182/447 (40%), Gaps = 43/447 (9%)

Query: 109 DTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI 168
           D+D   F  W+ F  +  L +  E +R  GQS  L AE  +  ++ +  +     A LR 
Sbjct: 78  DSDWSRFRLWMGFR-FGDLPQDQEDMRL-GQSLCLQAE--DGASLTLTRQEHSLRAVLRD 133

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +     +  A    +   L+  ++      +     VW  + AG ++W N S +     
Sbjct: 134 TAPADAITRHAAAQERYDLLARALAA-----EHAPMPVWIMNAAGTVIWHNDSARAVPPA 188

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
                      S    + +I   +  +S +  +        +H     Y +     + G 
Sbjct: 189 H---------VSPLTAQPDIPPELGETSCVRLDLAGDTGQPDH----IYDLHVTRTALGY 235

Query: 289 AGIAIDVSKEI---TVNDQLTHTY-EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
              A D+++ I   T+  +   T  +   +LT  + +FD+ + L   N +  +L  +   
Sbjct: 236 IHHAQDITRLIRAETLQREFVQTLSKTFADLTTGLVVFDRAKTLAIFNPALTDLTGLPAE 295

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHV 402
           FL+  PS     + LR    +PE  N+ +W+  I  + KS+    + + W LP+GQT  V
Sbjct: 296 FLSARPSLFGFFDALRDRMVMPEPKNYASWRSQITDMVKSATGGLYHEVWTLPSGQTYRV 355

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               +P G   ++FE+++++V    ++   + ++   ID L EG+AV   DGR+   N A
Sbjct: 356 TGRPHPDGAVAFLFEDISLEVSTTRRHRLQMDLRQSVIDCLQEGIAVLAQDGRLLFCNTA 415

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW----DLFAA---IITSFDDERKSLQ 515
           F  +   + +       + ++ A C+  Y +   W    D  A+   + T  D    S Q
Sbjct: 416 FGEMLGIDPDSSFADMGLHDVIAACAARYPDPGLWPEVEDRIASRRLVATLHDRAISSGQ 475

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTF 542
              +L         ++PL   Q+ML  
Sbjct: 476 AGADL--------RVVPLGRGQSMLCL 494


>gi|254205864|ref|ZP_04912216.1| sensor histidine kinase/response regulator [Burkholderia mallei
           JHU]
 gi|147753307|gb|EDK60372.1| sensor histidine kinase/response regulator [Burkholderia mallei
           JHU]
          Length = 642

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 20  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 72

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 73  GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 132

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 133 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 192

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 193 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 251

Query: 783 TINCRI 788
           T   RI
Sbjct: 252 TATARI 257


>gi|89893099|ref|YP_516586.1| hypothetical protein DSY0353 [Desulfitobacterium hafniense Y51]
 gi|89332547|dbj|BAE82142.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 585

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 6/235 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N  L++  + K  F+  VS+ELR+PLT II F ++L   K    +S + Q +  I 
Sbjct: 338 LEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFE-DSSEEQILCEIK 396

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S +LL+++N+ILDLA ++ G   L+  T+ L D++N V+  I      N+I +    +
Sbjct: 397 ENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIHLTARVE 456

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPE 732
             +     D +++ +I   +  NA+ F+  G  V ++A  A D      +V+++G  I +
Sbjct: 457 RGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIGISK 516

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           +    +F +F  V ++   Q  G GLGL++ +    LHGG +S+ S  ++G T I
Sbjct: 517 ENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKGSTFI 571


>gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C]
 gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C]
          Length = 1828

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 1333 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADENLSPKQVEFA 1392

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1393 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1452

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1453 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDNGAVELVIRPAGADVPTAIREQLLEA 1512

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                  + D I FSV + G  I       +F  F        R+  G GLGLSI      
Sbjct: 1513 GSLRDADADLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1572

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1573 LLGGEIHAASEPGRGSTFTLYLP 1595


>gi|162449530|ref|YP_001611897.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160112|emb|CAN91417.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 713

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 5/217 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A+ +K+ F+  +S+ELRSPL  I+G+T LL++        + S  +E I  +      
Sbjct: 313 REANRLKDEFLATLSHELRSPLNAILGWTHLLRSEPFD--EQRVSHGLEVIERNVAAQTK 370

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ D+LD++ V  G + ++ + + L  ++     +I        + I V  D  +     
Sbjct: 371 LIEDLLDVSRVTTGKLSISAAPMALAPVVETAIDAIRPAAEAKGLTIDVSLDPDI-EVNG 429

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+ S + SNA+ F+  G  +++   R       +V++ G  I  D    VF RF
Sbjct: 430 DADRLQQVVSNLTSNALKFTRPGDHILVSLRRAGATAELTVRDTGEGIAPDFLPLVFERF 489

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               +  R    G+G+GLS+V   + +HGG V   S 
Sbjct: 490 RQADSTSRRTHAGLGIGLSLVRQLVEIHGGSVVADSP 526


>gi|332160479|ref|YP_004297056.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664709|gb|ADZ41353.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 956

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + ++       
Sbjct: 342 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G  I E    
Sbjct: 402 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT--------INC 786
            +F  F        RR  G GLGL I E  +   GG +S  S  E  +T        +N 
Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHLTLDLNE 521

Query: 787 RIPSK 791
            IPS+
Sbjct: 522 AIPSR 526


>gi|312222389|emb|CBY02329.1| similar to autoinducer 2 sensor kinase/phosphatase luxQ
            [Leptosphaeria maculans]
          Length = 2006

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 22/251 (8%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + L++  + K+ F+ ++S+E+R+PL  I G  + L  S    LNS+Q ++V  I AS+  
Sbjct: 1276 QTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDS---VLNSEQLEHVNIIKASTDS 1332

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LLNL+NDILDL+ V+AG++KL+   + +  LL EV         +  + +  + +  + +
Sbjct: 1333 LLNLINDILDLSKVEAGMIKLSMEWLHVPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPT 1392

Query: 680  FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----------FIFSVKNNG 727
             V  D+ R+ Q+   ++ NA+ F+++G  + ++      D             F V + G
Sbjct: 1393 MVKGDKFRIRQVLLNVVGNAIKFTNRGE-IFVRCKMQPPDRSGLLKEHETMIRFEVVDTG 1451

Query: 728  SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT-- 782
                E   K +F RF  +  +   Q  G GLGL+I   F+ LHGG +   S    G T  
Sbjct: 1452 QGFTEAEAKHLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDAQSVPGRGSTFF 1511

Query: 783  -TINCRIPSKE 792
             TI   +P+ E
Sbjct: 1512 FTIKFGLPTPE 1522


>gi|299147684|ref|ZP_07040747.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
 gi|298513867|gb|EFI37753.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
          Length = 482

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 118/216 (54%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P+  I+    LL+  ++G+LN +Q Q  + I  +S  LL
Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG ++         +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 314 SITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   VI+ A +D       V++ G  I     KS+F+
Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENRIELYVQDFGKGIDPRYHKSIFD 433

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468


>gi|89893853|ref|YP_517340.1| hypothetical protein DSY1107 [Desulfitobacterium hafniense Y51]
 gi|219668229|ref|YP_002458664.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|89333301|dbj|BAE82896.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538489|gb|ACL20228.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 464

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 3/230 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E + K +++KN F+  VS+ELR+PLT+I+G+   L++ K        +  +  I+  S  
Sbjct: 231 EEITKKEKLKNDFISSVSHELRTPLTSIMGWAITLQSEKFQQ-KEMLNDGLGIIAKESER 289

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  +V ++LD +   +G +KL+Y  + + +L+  +++ +  +     I+  V     L  
Sbjct: 290 LTRMVEELLDFSKFVSGRIKLSYEEVNMAELMEHIRKQLTPRATRETIQFTVDYPENLPD 349

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL Q+   IL NA++F++   +V  +A     D+ F++ +NG  I       V 
Sbjct: 350 LLTDPNRLKQVLINILDNALNFTAAEGSVRFQAEVGEKDYTFTISDNGCGIAAGELPMVK 409

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F        R G+  GLSI E  I L  G + I S     TT+   +P
Sbjct: 410 EKFYKGKSSRSRNGI--GLSICEEIITLMKGRLEIHSEVNVGTTVVITLP 457


>gi|224535356|ref|ZP_03675895.1| hypothetical protein BACCELL_00218 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523019|gb|EEF92124.1| hypothetical protein BACCELL_00218 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 764

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 127/257 (49%), Gaps = 17/257 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +VT S R  R L E N   R A+E+   +   +  ++++ ++PL +I+G+ DLL  S+L 
Sbjct: 245 DVTRSNRYRRQLEEAN---RFAEELLASREKLMLAITHDFKAPLGSIMGYADLL--SRL- 298

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +++ +Q  Y++ +  SS  LL LV D+LD   +D    ++N  T     LL E+  S   
Sbjct: 299 TVDGRQRFYLDNMKTSSEHLLKLVTDLLDFHRLDLNKAEINRVTFHPARLLEEIYVSFEP 358

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 + +K   D +L G+F++D  RL QI + +LSNA+ F+S+G   +  +    GD 
Sbjct: 359 LTSAKGLSLKCEIDPELKGAFISDPLRLRQIVNNLLSNAVKFTSEGGITLTASFVPKGDS 418

Query: 720 IF-------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +F       SV + G  +     + +F  F          G GLGLSIV   + L  G +
Sbjct: 419 VFPGNHLKLSVIDTGKGMDPGDRERIFQEFTRLPGAQGEEGFGLGLSIVRMLVQLLEGRI 478

Query: 773 SISSSDEGVTTINCRIP 789
            + S     +T   R+P
Sbjct: 479 EVDSVLGKGSTFTLRVP 495


>gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1572

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 12/242 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGS 601
            +N+ +S   +R L    E    A+  K  F+ ++S+E+ +P+  IIG T L LKT     
Sbjct: 815  LNINESKALQRELASAIEIADDANRAKGEFLANMSHEIHTPMNAIIGMTHLALKTE---- 870

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L  +Q  Y+E    S+  LL ++NDILD + ++AG + +      L D+L ++   +  K
Sbjct: 871  LTKQQHSYIEKSHRSAQSLLGIINDILDFSKIEAGKLDIETIQFRLEDVLEDIINFVGIK 930

Query: 662  MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716
            + E  + +    D  + + +  D  RL QI + + +NA+ F+  GS +    I K   D 
Sbjct: 931  VAEKELELLFDIDPTIPAILQGDPLRLAQILTNLANNAVKFTEHGSVIIGVSIEKLTDDE 990

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                FSV + G  +  +  + +F  F        R+  G GLGL+I ++  +L GG + +
Sbjct: 991  VTLKFSVTDTGIGMTAEQQQGLFKAFSQADASTTRKYGGTGLGLAICKNLADLMGGEIGV 1050

Query: 775  SS 776
            SS
Sbjct: 1051 SS 1052


>gi|254198287|ref|ZP_04904709.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
 gi|169655028|gb|EDS87721.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
          Length = 693

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1467

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELREKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G    V +  + D+      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  I+LH G +   S +
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPE 1151


>gi|302185533|ref|ZP_07262206.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 1187

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 130/258 (50%), Gaps = 14/258 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+  + E+ L        +A+E K++F+  +S+E+R+P+  IIG  +L +   L  
Sbjct: 668 WIDITERKQLEQQLQNAVRMAAQANEAKSAFLASMSHEIRTPMGAIIGLLELEREHTL-R 726

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                S  ++    S+T L+ L+ + LDLA ++AG ++L+ +   L+DL + V +  + +
Sbjct: 727 RGETPSHGLQVAHRSATELVALIGESLDLARIEAGSLQLSLAITPLHDLFDGVIELFSAQ 786

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716
             E ++ +++  S    G +  D  RL Q+   +L NA+ F+ +G+ V    +   +  +
Sbjct: 787 AREKSVELRMEFSAQARGDYWLDPMRLRQVLHNVLGNALKFTRQGAVVVKVDVTSESSGS 846

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                S++++G  I  +  + VF  F      + AH G   G GLGLSI    + L  G 
Sbjct: 847 TRVRISIQDSGEGIEPERQQHVFQPFTQASDDTAAHYG---GSGLGLSITRQLVELMKGD 903

Query: 772 VSISSSDEGVTTINCRIP 789
           +S+ S     T +   +P
Sbjct: 904 ISLHSEPGQGTLVTVDLP 921


>gi|242280815|ref|YP_002992944.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123709|gb|ACS81405.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 568

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 122/232 (52%), Gaps = 8/232 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+      A ++K  F+ ++S+E+R+P+ +I+G  +LLK +   +++ +Q +++    
Sbjct: 331 LQEEKAKAETASKVKTEFLANMSHEIRTPMHSILGMVELLKET---NVDEEQREFLNIAG 387

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +   LL ++ND+L+++ ++AG +++     +L +++  V    A       +++   I 
Sbjct: 388 TAGESLLEIINDVLEISKIEAGHLQIERHEFLLREMVERVVSVFALDAARKGLKLVCHID 447

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +      V D  R+ Q+ + ++SNA+ F+S+G T+++    +    IF+VK+ G  I  D
Sbjct: 448 ENVPDKVVGDATRIRQVLNNLISNAVKFTSEG-TIVVSIYWEAEKLIFAVKDEGIGIAAD 506

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
               +F  F        R+  G GLGL I    +++ GG + + SS  EG T
Sbjct: 507 KINYIFESFTQADSSTSRKYGGTGLGLPISRKLVSMMGGEIFVCSSVGEGTT 558


>gi|254423801|ref|ZP_05037519.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196191290|gb|EDX86254.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 427

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 127/251 (50%), Gaps = 11/251 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R ++ +  +N  L++   +K+ F+  +S+ELR+PL  IIGF+ +L   K G +N  Q   
Sbjct: 159 RKQQQIYRQNLQLQEVSRLKSEFLATMSHELRTPLNAIIGFSQILLGGKKGDINETQRDM 218

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  + ++   LL L++DIL+L+ ++AG ++L    + L  L+ E  + + + +    + +
Sbjct: 219 LGRVLSNGRHLLELISDILELSKIEAGRLELEPCKMDLVKLVEETVEELQSLITPKQLDL 278

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD-----NG---DFI 720
           KV           D  R+ Q+   +LSNA+ F+  GS TV +K+        NG   + +
Sbjct: 279 KVDITLNDPIITNDPTRVRQVLINLLSNAIKFTQHGSITVSIKSLTTKHSCMNGGSEEIL 338

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  I +     +F  F  +  R  R   G GLGL+I  S + +  G +++ S  
Sbjct: 339 LSVSDTGCGISDVDQPYIFEAFHQSDQRTNRHHAGTGLGLAITYSLVKMMCGDITVESQV 398

Query: 779 EGVTTINCRIP 789
           +  +T   RIP
Sbjct: 399 DKGSTFRVRIP 409


>gi|170288964|ref|YP_001739202.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
 gi|170176467|gb|ACB09519.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
          Length = 412

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 123/237 (51%), Gaps = 13/237 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           RK DE++  F+  VS+ELR+PLT+I G+ + L       L +K+   ++++ I   S  +
Sbjct: 180 RKLDEMRREFIATVSHELRTPLTSIHGYAETLLED---DLENKELVKRFLKIIEEESARM 236

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ND+LDL  ++   +      + L +++  V + I     EN + + V  +  +   
Sbjct: 237 TRLINDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVVVK- 295

Query: 681 VADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736
             +++RL+Q+   ++ NA+ ++S   KG   +   A D  D+ +  VK+ G  IP++   
Sbjct: 296 -GNKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVKDTGPGIPKESQS 354

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F +F  V  A   +  G GLGL+IV++ ++ HGG + + S     T +   +P +
Sbjct: 355 RIFEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPKR 411


>gi|253998768|ref|YP_003050831.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. SIP3-4]
 gi|253985447|gb|ACT50304.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. SIP3-4]
          Length = 906

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 110/207 (53%), Gaps = 4/207 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT+++G  D L+ +    + S +   +E +   +  +  L
Sbjct: 670 ESERLRNSLLSAISHDLRTPLTSLLGIADQLRQAP--DMPSDRHAQLETLYDQAFRMQQL 727

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + AG ++LN    VL ++L    +++     ++ I + +  +  L  F  D
Sbjct: 728 VVNLLDMARLQAGSVQLNSQWQVLEEVLGSALRAMQPVSQQHRIEVTLPPELPLLQF--D 785

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
              L ++F  +L NA  +S   +T+ + A +  G+   +V + G  +P  M   +F +F 
Sbjct: 786 AVLLERVFCNLLDNACKYSPPNTTIRISAQQHPGEVWVTVADEGWGLPAGMETQIFQKFT 845

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGG 770
                  + GVGLGLSI ++ I  HGG
Sbjct: 846 RGKVESPQPGVGLGLSICKAIIQAHGG 872


>gi|237716428|ref|ZP_04546909.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262408028|ref|ZP_06084576.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|294645444|ref|ZP_06723147.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809529|ref|ZP_06768226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444075|gb|EEO49866.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262354836|gb|EEZ03928.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|292639213|gb|EFF57528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294443269|gb|EFG12039.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 499

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++       +++ +V 
Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS +S  L+ L++DILDL+ +++  +K  +S   LN L+ ++++  A K   + I IK 
Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPI-SEIEIKS 374

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----IFSVKNNG 727
           +   +      D  RL Q+    ++NA  F+ KG  +      DN +     IF V++ G
Sbjct: 375 LLPDEDVYINTDITRLKQVICNFINNARKFTQKGY-IHFGYTLDNRNADSVQIF-VEDTG 432

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           S IP++    +F+RF       Q  G GLGLSI ++ +    G +S+ S
Sbjct: 433 SGIPQECLNEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDISVKS 479


>gi|227812276|ref|YP_002812286.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|298499508|ref|ZP_07009314.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
 gi|227011418|gb|ACP07629.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|227015228|gb|ACP11437.1| sensor protein TorS [Vibrio cholerae O395]
 gi|297541489|gb|EFH77540.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
          Length = 1020

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 122/217 (56%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L S Q  YV+ I+ S   LL +
Sbjct: 501 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 557

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L++E  + + ++  E  I +    D  +  +   
Sbjct: 558 LNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQG 617

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 618 DEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 677

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 678 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 713


>gi|37524900|ref|NP_928244.1| sensor protein BarA [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784326|emb|CAE13203.1| Sensor protein BarA [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 775

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 20/237 (8%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQY 609
            E A+ +K    + A  IK  F+ ++S+ELR+PL  +IGFT   LKT     L  +Q++Y
Sbjct: 276 VELAIAKKRA--QDAARIKTEFLANMSHELRTPLNGVIGFTRQTLKTP----LTIQQTEY 329

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S+  LLN++NDILD + ++A  + L     +L D ++EV   +       NI++
Sbjct: 330 LYIIERSANHLLNIINDILDFSRLEADKLVLENVPFLLQDTIDEVMVLLTLSAKSKNIQL 389

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724
               D ++ +  V D  RL QIF+ I+ NA+ F+ +GS  I    L+      +   +V 
Sbjct: 390 THHVDPQIPNLVVGDPTRLQQIFTNIIGNAIKFTDQGSVEIKINLLQQKHHKINLEITVS 449

Query: 725 NNGSSIPEDMCKSVFNRF-VSNA----HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  I  +    +F  F  +NA    H G   G GLGL I    I   GG++S +S
Sbjct: 450 DTGIGISPEQQPHLFQAFHQANASISRHYG---GTGLGLVITRKLIQEMGGNISFTS 503


>gi|46201637|ref|ZP_00054637.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 968

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 13/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +ALT   E+   A+  K++F+  +S+E+R+P+  +IG  +LL  ++   L+S Q   V  
Sbjct: 440 QALTIAKESAEAANVAKSAFLAAMSHEIRTPMNGVIGMIELLDHTE---LDSDQRDLVST 496

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S   LL +++D+LD + ++AG ++L    + L+ +++ V Q+I+      ++ I   
Sbjct: 497 TRDSGLALLRILDDVLDFSKIEAGRLELEQEPVRLDRMVDSVVQTISPAAAAKSLSISTF 556

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVK--N 725
            D  L   V AD  RL QI   +  NA+ F+++G  V +   R    + G  + S++  +
Sbjct: 557 VDPGLPPLVLADPVRLRQILFNLAGNAVKFTAQG-LVAIHVGRCGTDEQGRVMVSIRVVD 615

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I + +   +F  F        RR  G GLGLSI    ++L  G     S     ++
Sbjct: 616 TGIGIEDALRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPNVGSS 675

Query: 784 INCRIP 789
             CR+P
Sbjct: 676 FWCRLP 681


>gi|313200853|ref|YP_004039511.1| osmosensitive k channel his kinase sensor [Methylovorus sp. MP688]
 gi|312440169|gb|ADQ84275.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. MP688]
          Length = 906

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 110/207 (53%), Gaps = 4/207 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT+++G  D L+ +    + S +   +E +   +  +  L
Sbjct: 670 ESERLRNSLLSAISHDLRTPLTSLLGIADQLRQAP--DMPSDRHAQLETMYDQAFRMQQL 727

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + AG ++LN    VL ++L    +++     ++ I + +  +  L  F  D
Sbjct: 728 VVNLLDMARLQAGSVQLNSQWQVLEEVLGSALRAMQPVSQQHRIEVTLPPELPLLQF--D 785

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
              L ++F  +L NA  +S   +T+ + A +  G+   +V + G  +P  M   +F +F 
Sbjct: 786 AVLLERVFCNLLDNACKYSPPNTTIRISAQQHPGEVWVTVADEGWGLPAGMETQIFQKFT 845

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGG 770
                  + GVGLGLSI ++ I  HGG
Sbjct: 846 RGKVESPQPGVGLGLSICKAIIQAHGG 872


>gi|295688681|ref|YP_003592374.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430584|gb|ADG09756.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 843

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 185/395 (46%), Gaps = 57/395 (14%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-------------A 484
           + I+ +SE   ++   GR+ + N  +R+++  +   L PG     I             A
Sbjct: 454 DAIESVSEAFVLWDRHGRLLMCNRNYRNVFSLDPKLLKPGAARAEINRRAALAIKQDHSA 513

Query: 485 ATCSRYYNESD-----------------GWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              ++   E++                 G  + AA IT+  ++ ++ +     L+   L+
Sbjct: 514 PDAAKGVREAELMDGRWIQISERRTAEGGLVMTAADITAIKNQDEARR-----LNQEQLQ 568

Query: 528 YSIIPLPNAQTMLTFVNV---TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            ++  L  +Q  L  +     T+ VRAE            A+  K+ F+ ++S+ELR+PL
Sbjct: 569 NAVAGLERSQEQLAELARKYETEKVRAE-----------GANRAKSEFLANMSHELRTPL 617

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             I GF++++     G L  ++ + Y + I +S   LL L+NDILD++ ++AG M L + 
Sbjct: 618 NAINGFSEIMMNEMFGPLGDERYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFE 677

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + + D+  +  + +  +     + ++ I    L    AD + + Q+   +LSNA+ F+ 
Sbjct: 678 PMHVEDVAEDAVRLVRNRAEAAGLNLR-IDFPPLPEIEADYRAIKQVLLNLLSNAIKFTP 736

Query: 704 KGSTVILKAA--RDN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           +  +V L A   RD  GD +  SV + G  I ++    +   F  V +      +G GLG
Sbjct: 737 RAGSVTLTAEVRRDAFGDMVRVSVADTGIGIAKEDLARLARPFEQVESQFSKTTQGTGLG 796

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L++ +S I++H G + ++S+    TT++  +P ++
Sbjct: 797 LALTKSLISMHDGALEMTSTPGEGTTVSFALPIRQ 831


>gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
 gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
          Length = 935

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+ELR+PL +I GF  LL   + G+L+++QS Y++ I  SS  LL L+
Sbjct: 285 ANQAKSVFLANISHELRTPLNSIDGFIHLLL--RQGNLSNEQSLYLQTIRKSSAHLLALI 342

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +DG     + D
Sbjct: 343 NDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIDMAFYYADGVPKHIIGD 402

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
             R  QI + ++SNA+ F+  G  ++      +G       FSV+++G  +     K +F
Sbjct: 403 ALRFKQILTNLISNAIKFTPDGEIIVRARMEHDGMDQCVLHFSVQDSGIGLSGTDRKKLF 462

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 ESFSQGDTSVTRQFGGTGLGLAISKQLVSLMHGQIGFEDNQERAPT 508


>gi|288942569|ref|YP_003444809.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897941|gb|ADC63777.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 706

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 12/255 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  R E  L    E    A   K +F+  +S+ELR+P+  I+G T LL  S    LN
Sbjct: 438 DITDRKRHEAELLAAKERAESAARAKTTFLSTMSHELRTPMHGILGMTQLLLESD---LN 494

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q + ++ +  S+  LL ++ DILD   +DA  ++L         ++ +V    A +  
Sbjct: 495 ERQRRQLDTVKRSADTLLAILADILDYTRMDAEELQLQPGPCDPLRIIRDVMTVYAPQAE 554

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDN 716
           +  +   + S      FV  D +RL QI  K+ +NA+ F+ +G   +         A  +
Sbjct: 555 KKGLGFVLDSSRPAPGFVIVDARRLQQILDKLTANAVKFTHEGEIRLATWLDTETPAGGS 614

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           G     V + G  IP+ + +S+F  FV    +H  +  G GLGL+I        GG +S+
Sbjct: 615 GRLAICVTDTGIGIPDALHESIFEPFVQADGSHTRRYGGTGLGLAIARRLAEALGGTLSV 674

Query: 775 SSSDEGVTTINCRIP 789
            S  +  +     IP
Sbjct: 675 ESEPDQGSRFTLSIP 689


>gi|171689512|ref|XP_001909696.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944718|emb|CAP70829.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2091

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 15/221 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A + K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  LL
Sbjct: 1405 LKEAMDSKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLL 1461

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKLN+       L+ +V + ++T      + +  + +  + ++V
Sbjct: 1462 MIINDILDLSKVDAGMMKLNFEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWV 1521

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGD----FIFSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F+S+G       VI+    + G       FSV + G    
Sbjct: 1522 KGDKVRIRQVLLNVIGNAIKFTSQGEVFSRCKVIVPEGVELGKAEIMLEFSVIDTGRGFT 1581

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
            E   + +F  F  +  +   Q  G GLGL I      LHGG
Sbjct: 1582 EQEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGG 1622


>gi|166712335|ref|ZP_02243542.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1131

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 12/238 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A  +K+ F+  +S+ELR+PL  I+G++ L+++      +  + 
Sbjct: 729 SLQAETAARAQAE---HASRVKDEFLATLSHELRTPLNAILGWSQLMQSEMTEPTHLGRG 785

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664
             +  I  S+     +++D+LD++ + +G ++L      +  L+    E+ Q  A    E
Sbjct: 786 LVI--IERSARAQTQIIDDLLDMSVILSGKIRLQAERFDIAGLVRSTLELMQPTALA-RE 842

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + +    DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V+
Sbjct: 843 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDIEDERLRLCVQ 901

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I  D    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 902 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGILDASSAGEG 959


>gi|134056912|emb|CAK44259.1| unnamed protein product [Aspergillus niger]
          Length = 2262

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 31/260 (11%)

Query: 552  ERALTEKNEALRKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL +  EA +KA                  + K+ F+ ++S++LR+P+  +IG ++LL
Sbjct: 1780 KRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELL 1839

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +KL   + +Q +YVE I   +  LL L+NDILD + ++AG MK++   + + + ++EV
Sbjct: 1840 KGTKL---DREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEV 1896

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
             +++     +  +      D      V   D  RL QIF  +LSN+  F+ KGS TV  K
Sbjct: 1897 VRALRYTHRDRGLETIEDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAK 1956

Query: 712  AARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
             +R+    +    SV + G  I E+    +F  F S A     R   G GLGLSI ++ I
Sbjct: 1957 VSREGKGRVRLECSVSDTGIGISEEQKSRLFRPF-SQADNSTARSYGGSGLGLSICKAII 2015

Query: 766  -NLHGGHVSISSSDEGVTTI 784
             ++ GG + + S+    TT+
Sbjct: 2016 EDVLGGAIWLDSTSGVGTTV 2035


>gi|115377149|ref|ZP_01464363.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822860|ref|YP_003955218.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365858|gb|EAU64879.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395932|gb|ADO73391.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ + ++  FV +VS+ELR+P+T I G+ + L+T  L    +   + VE I   S  L 
Sbjct: 216 LRRLENVRKDFVANVSHELRTPITAIRGYAETLQTGALQD-PTVAPKMVEIIHRQSERLS 274

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+L+L+ +++  MKL ++ + L    +    ++  K    NIR+++     L +  
Sbjct: 275 ELVEDLLELSRLESREMKLRFADVSLAVAASRAADTVKPKAEGKNIRLELHVPSDLRAR- 333

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D + + Q+   +L NA+ ++  G  V ++  ++NG  +  VK+ G  I       +F R
Sbjct: 334 GDERAVEQVLLNLLDNAVKYTPAGGRVDVRGTQENGRCVVRVKDTGVGIEPKHLSRIFER 393

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           F     +G+ R   G GLGLSIV+  +    G V + S
Sbjct: 394 FY-RVDKGRSRDMGGTGLGLSIVKHLLGAMEGEVKVES 430


>gi|58581946|ref|YP_200962.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426540|gb|AAW75577.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1150

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 12/238 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A  +K+ F+  +S+ELR+PL  I+G++ L+++      +  + 
Sbjct: 748 SLQAETAARAQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTHLGRG 804

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664
             +  I  S+     +++D+LD++ + +G ++L      +  L+    E+ Q  A    E
Sbjct: 805 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALA-RE 861

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + +    DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V+
Sbjct: 862 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPVGGTVRVAMDIEDERLRLCVQ 920

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I  D    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 921 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 978


>gi|104774696|ref|YP_619676.1| two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116514823|ref|YP_813729.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103423777|emb|CAI98783.1| Two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116094138|gb|ABJ59291.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126517|gb|ADY85847.1| Two-component sensor histidine kinase homolog [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 402

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 122/219 (55%), Gaps = 8/219 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNL 623
           ++ K+  + +VS+++R+PLT+IIG+  LLK    G++ S++   +Y+      +  + +L
Sbjct: 164 EQSKDELITNVSHDIRTPLTSIIGYLGLLKN---GAVTSQEDMLKYINIAYDKAEQMKSL 220

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            ND+ +  T+ +   KLN + I +  ++ +V      +  +  I   V +        AD
Sbjct: 221 ANDLFEYTTLKSTKTKLNVTPINIKGMMEQVAAGFELEAEKKGIAFSVKARPDDLIVNAD 280

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
            ++L+++++ ++SNA+ +++  S + L A   N + +   V+NNG  IP+D  K +F+RF
Sbjct: 281 VEKLVRVYNNLISNALKYAAGASRINLVANLINHEQVELRVENNGEPIPKDKLKKIFDRF 340

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             V ++   +  G GLGLSIV+  + LHGG +   S+ +
Sbjct: 341 YRVESSRNTKTGGTGLGLSIVQGGVELHGGTIRCESNKD 379


>gi|220911578|ref|YP_002486887.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219858456|gb|ACL38798.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 497

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 18/243 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA +K++     FV   S+ELR+PLT I G+T+L++ ++  + + ++S  +  + + S  
Sbjct: 259 EARQKSETKVRQFVADASHELRTPLTAIRGYTELMRMTEDFTPDGQKS--LARVQSQSER 316

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+L LA +D G   L  + + L  L+ E           +  R+ + ++  L  
Sbjct: 317 MTALVEDLLLLARLDEG-QPLKLAEVDLTQLVVESVSDEKVMAPSHTWRLDLPAEPVL-- 373

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSV 738
              D  +L Q+   +LSNA   +  G+TV+       +G  + +V ++G  IP D    V
Sbjct: 374 VNGDGAQLRQVLMNLLSNARKHTPAGTTVVAGVGTAPDGAAVVTVTDDGGGIPADFVDHV 433

Query: 739 FNRF----VSNAHRGQRRGV-------GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F+RF     +   RG + G        GLGLSIV+S +  HGG V+++S   G+T    R
Sbjct: 434 FSRFARADAARKGRGDQAGAAVAEGTSGLGLSIVQSIVEAHGGRVTVTSR-PGMTEFALR 492

Query: 788 IPS 790
           +PS
Sbjct: 493 LPS 495


>gi|88813407|ref|ZP_01128644.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
 gi|88789373|gb|EAR20503.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
          Length = 831

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 124/256 (48%), Gaps = 5/256 (1%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M    + T+  R E  L +    L +A+  K+ F+  + +ELR+PL  I    +L+K + 
Sbjct: 425 MKVMRDQTEQKRLEDELRKTAADLSEANRRKSEFLATLGHELRNPLAPIRMGLELMKMA- 483

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                +K  +    +      ++ L++D+LD++ +  G ++L    + + +++    +  
Sbjct: 484 -ADSPAKMEEIRGMMERQVLQMVRLIDDLLDVSRITRGKLQLRICRVAVANVVQNAVEMA 542

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              + E + ++ V    +     AD  RL Q+FS +L+N+  ++ +G  + L A R   D
Sbjct: 543 RPFIDEADHQLTVAVPPQPIHLDADPNRLAQVFSNLLNNSAKYTPEGGHIWLSAERQGSD 602

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + ++++NG  IP DM  S+F  F  V         G+G+GL++V+  + +HGG +   S
Sbjct: 603 VVVTIRDNGIGIPADMQTSIFEMFTQVDRPLEQGYTGLGIGLTLVKQLVEMHGGRIDARS 662

Query: 777 SDEGV-TTINCRIPSK 791
              G  +    R+P K
Sbjct: 663 EGSGRGSAFEVRLPLK 678


>gi|298251742|ref|ZP_06975545.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297546334|gb|EFH80202.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 489

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A     ++L ++++++ + V  V++ELR+PL NI G+ +LL+   L       +   E  
Sbjct: 228 AFNAMADSLSRSEQLRRNLVSDVAHELRNPLMNIRGYLELLQDQVLEPTPETLASLYE-- 285

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +++L  LV D+ D++  +AG + L    I L D+ ++  Q +   + E  + + V  
Sbjct: 286 --ETSLLNRLVADLQDVSLAEAGQLHLTRQPIELADIASQAVQIVQPHLAEKQLTLHVSI 343

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L    AD++R+ QI   +LSNA+  +     + L A         SV++ G  I  +
Sbjct: 344 PSDLPHIEADQERVAQILRNLLSNAIRHTPSQGEICLAAGLSEAGVHISVRDTGVGIAPE 403

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F RF        R   G GLGL+IV+  +  HGG VS+ S
Sbjct: 404 HLPYLFERFYRADFSRARATGGTGLGLAIVKQVVQAHGGQVSVES 448


>gi|294673424|ref|YP_003574040.1| sensor histidine kinase/response regulator [Prevotella ruminicola
           23]
 gi|294473696|gb|ADE83085.1| sensor histidine kinase/response regulator [Prevotella ruminicola
           23]
          Length = 409

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK +   KA ++K+ F+ ++S+E+R+PL  I GF+ +L  +        + ++ E I ++
Sbjct: 31  EKAQKAEKASKMKSLFLANMSHEIRTPLNAIEGFSRVLVET---DSQDDRMKFFEIIESN 87

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L++LVN+ILDL+ V+AG + +  S+  LN L + +K     +  E  +++       
Sbjct: 88  NNRLMSLVNEILDLSRVEAGEITMKKSSTDLNQLCDSIKNLFKFRCPE-TVKLSWKKPNM 146

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PEDM 734
             +F  D  R+ Q+FS ++SNA+  +S GS        D G  I F V++ G+ I PED+
Sbjct: 147 AVTFNTDANRITQVFSNLISNALKHTSAGSITYGYRMLDEGSNIEFFVQDTGTGIAPEDL 206

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + +FN +VS        G GLGL++ +  +   GG + + S
Sbjct: 207 -QHIFNTYVSRDAETNNNGYGLGLALCKIIVEKLGGKIYVES 247


>gi|189912995|ref|YP_001964884.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|189913322|ref|YP_001964551.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167777671|gb|ABZ95971.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781390|gb|ABZ99687.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 664

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  EA  KA++ K+ F   +++ELR+PL  +IGF+ +L   K  +L      +V  
Sbjct: 318 KRLQKAVEAAIKANQSKSVFFSKITHELRTPLHAVIGFSQIL--GKDPNLPEHLKGFVNS 375

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +   LL ++NDILDL+ ++AG M  +     L  L + +    + +  E +I  ++I
Sbjct: 376 LYENGVHLLGMINDILDLSKIEAGKMTESREKFSLVQLWDTLFSMFSYRFAEKHILFELI 435

Query: 673 SDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFI-FSVKN 725
               + +  F AD Q++ QI   +L NA+ F+++G       I +    N D + F VK+
Sbjct: 436 HPETIKNQYFEADLQKIRQILVNLLGNALKFTNQGFVNMEVKIKQGLEPNIDLVSFIVKD 495

Query: 726 NGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP+D   S+F  F         + G GLGLSI    ++  GG + + S     +T 
Sbjct: 496 TGIGIPKDQLHSIFEAFQQTEQGSSYQEGTGLGLSISHQLVDFLGGTIQVDSDTNQGSTF 555

Query: 785 NCRIP 789
              +P
Sbjct: 556 IFELP 560


>gi|161986555|ref|YP_309969.2| hybrid sensory histidine kinase TorS [Shigella sonnei Ss046]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|323947218|gb|EGB43226.1| TMAO reductase sytem sensor TorS [Escherichia coli H120]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|262383486|ref|ZP_06076622.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294384|gb|EEY82316.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 638

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 129/248 (52%), Gaps = 19/248 (7%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +A++AL  + E+L +A       D +K+ F+ ++S+E+R+PL  IIGF+ L+  ++L   
Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ QY   I+ ++ +LL LVNDILDLA +++G +  +  +  L DL+  + +   + +
Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721
            E  I  K           +D++RL Q    IL NA+ F+S G   I  + + D  D   
Sbjct: 513 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYSADAQDVRL 571

Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I PED  +++F RF       Q  G GLGLSI ++ +    G + + S    
Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLQSEKNK 628

Query: 781 VTTINCRI 788
                CRI
Sbjct: 629 ----GCRI 632


>gi|90020053|ref|YP_525880.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89949653|gb|ABD79668.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 498

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 124/237 (52%), Gaps = 10/237 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASST 618
           EA   +++ K+ F+ ++S+ELR+PL +IIGF+  +LKT +  +L+ +Q   +  IS S  
Sbjct: 263 EAAEASNQAKSDFLANMSHELRTPLNSIIGFSKRILKTQE--NLDERQVHSLGVISRSGE 320

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+ND+LDL  +DAG M+++     L  +     +      H   +R+ + +   L 
Sbjct: 321 HLLQLINDVLDLTKIDAGRMEISPRPTDLTQVCRYAIEDQQEAAHSKGLRLTLHAPETLV 380

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
             V D  R+ Q+   ++SNA+ +S +G  V+  A R   D I   V+++G  I  +  K 
Sbjct: 381 GEV-DELRIRQVMLNLVSNAVKYSEQGEIVV--ALRYVDDAIEICVEDSGIGIKAEDQKR 437

Query: 738 VFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RF     + +    RG GLGL IV  F+ LH G + + S     +     +PSK
Sbjct: 438 LFKRFEQFDMQSRMQIGRGSGLGLYIVNEFVRLHKGWLKVESEYGRGSRFYVYLPSK 494


>gi|229514161|ref|ZP_04403622.1| sensor protein TorS [Vibrio cholerae TMA 21]
 gi|229348141|gb|EEO13099.1| sensor protein TorS [Vibrio cholerae TMA 21]
          Length = 984

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +   I D     +  
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|229191305|ref|ZP_04318291.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876]
 gi|228592110|gb|EEK49943.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876]
          Length = 448

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  + 
Sbjct: 222 IKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSE--EERNHYLQIIEGESKRMS 279

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +L   +L LA++D     L      L   + +V   +  K  E +I ++  + D  +   
Sbjct: 280 SLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDITIK-- 337

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F+
Sbjct: 338 -GDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIFD 396

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 397 RFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELP 447


>gi|326441348|ref|ZP_08216082.1| putative two-component system sensor kinase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 694

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 6/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           + + V  V++ELR+PL+NI G+   L+ ++ G +    + +V+ +   +  L ++++D+ 
Sbjct: 456 RRAMVSDVAHELRTPLSNIRGW---LEGAQDG-VAEPDAAFVDSLLEEAVQLQHIIDDLR 511

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA  DAG ++L    +   +LL +V  +   +  E    ++V     +    AD  RL 
Sbjct: 512 DLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSADPVRLR 571

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q    +LSNA+  + +G +V L+AA         V + G  I  +    VF+RF      
Sbjct: 572 QAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRFWRAEKS 631

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776
             RR  G GLGL+IV      HGG V++ S
Sbjct: 632 RSRRTGGSGLGLAIVRKLTEAHGGAVTVES 661


>gi|120603325|ref|YP_967725.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563554|gb|ABM29298.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 667

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 133/261 (50%), Gaps = 26/261 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA R + E  +A   A   K SF+  +S+E+R+ L  I+G T+L+  +    L+ +Q + 
Sbjct: 123 RAVREIDEARQAAEHASLAKTSFLAGMSHEIRNTLNGIVGMTELVLDTP---LSGEQRES 179

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  + ASS  LL L++D+LD + ++A  ++L      L+ LL +V Q+  ++    NI +
Sbjct: 180 LNTVLASSETLLTLLHDVLDFSRLEARQLRLVERPFSLDRLLKQVVQASRSEAERKNISL 239

Query: 670 --KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDN 716
             +V  D        D  RL Q+ + ++ NA+ F+ KGS +I           L++   +
Sbjct: 240 DFRVTPDVP-DRLTGDATRLTQVLANLVGNAVKFTHKGSVIIEVSAIPQDQTLLESLFPD 298

Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           G       +FS+++ G  I ++  +++F  F   A    +R  G GLGL+I  + + + G
Sbjct: 299 GPPSSLTLLFSIRDTGIGIADEHLRTIFEAFSQGAEETVQRYGGTGLGLAICRNLVEIMG 358

Query: 770 GHV-SISSSDEGVT-TINCRI 788
           G + + SS  +G +    CR+
Sbjct: 359 GSIWARSSEGQGSSFHFTCRL 379


>gi|302670412|ref|YP_003830372.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302394885|gb|ADL33790.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1269

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 133/262 (50%), Gaps = 20/262 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTS 597
            +T +  T++ R E          R A+E K++F+ ++S+E+R+P+  ++G  + +L+  
Sbjct: 632 FITILRATETARME------ERRARAANEAKSNFLANMSHEIRTPINAVLGMNEVILREC 685

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K    + K  +Y + I  +   LL+L+NDILD + ++AG M++  +    + +LN+V   
Sbjct: 686 K----DEKILEYAQNIEGAGRTLLSLINDILDFSKIEAGSMEITEAEYDFSSVLNDVYNM 741

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--R 714
           +  K  +  + +K   D  L  +   D  RL QI   +L+NA+ ++ +G  V L+A   R
Sbjct: 742 VHIKAEQKILDLKFDIDEDLPDTMYGDEMRLRQIIVNVLNNAVKYTEEGG-VTLEATGIR 800

Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
           D GD I     + + G  I ++   ++F++F        R   G GLGL+I  S + L G
Sbjct: 801 DYGDTITLKIKITDTGKGIKKEELPTLFDKFKRLDAEKNRTIEGSGLGLAITHSLLELMG 860

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + + S     +T    +P K
Sbjct: 861 GSIMVDSVYGKGSTFTIVLPQK 882


>gi|298376092|ref|ZP_06986048.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267129|gb|EFI08786.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 638

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 128/248 (51%), Gaps = 19/248 (7%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +A++AL  + E+L +A       D +K+ F+ ++S+E+R+PL  IIGF+ L+  ++L   
Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ QY   I+ ++ +LL LVNDILDLA +++G +  +  +  L DL+  + +   + +
Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721
            E  I  K           +D++RL Q    IL NA+ F+S G   I  +   D  D   
Sbjct: 513 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYPADAQDVRL 571

Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I PED  +++F RF       Q  G GLGLSI ++ +    G + + S    
Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLKSEKNK 628

Query: 781 VTTINCRI 788
                CRI
Sbjct: 629 ----GCRI 632


>gi|293433288|ref|ZP_06661716.1| TMAO reductase system sensor TorS [Escherichia coli B088]
 gi|291324107|gb|EFE63529.1| TMAO reductase system sensor TorS [Escherichia coli B088]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|281204163|gb|EFA78359.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1047

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 20/243 (8%)

Query: 551 AERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           A++ L E + ALRKA+   E K +F+  VS+E+R+P+  I+   ++++ +    LN  Q 
Sbjct: 153 AKKKLIEADLALRKAEAINEAKINFLTTVSHEVRTPINGILASVEIIENT---VLNDTQR 209

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++  I  S   LL+L+ DILD + ++AG M+L      +  +L E    + T   E ++
Sbjct: 210 DFLSCIKDSGCYLLDLITDILDFSKIEAGKMELQKVEFNMITMLEEAMNIVYTTAQERDL 269

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD----- 718
            I +  +  +   V  D  R+ Q+    LSNA+ F+ KG  ++   L  +  N D     
Sbjct: 270 EILLTVEESVPIVVIGDPYRVKQVLLNFLSNAIKFTPKGHVIVRVKLDKSNPNQDSSSLV 329

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F V+++G  I E+   S+F  F+      QR+  G GLGLSI +    L GG ++
Sbjct: 330 DYTVCFEVEDSGIGIKEEQMDSLFTAFLQLDGTSQRKNQGTGLGLSISKRLCQLMGGEIT 389

Query: 774 ISS 776
           + S
Sbjct: 390 VRS 392


>gi|260854697|ref|YP_003228588.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O26:H11 str. 11368]
 gi|257753346|dbj|BAI24848.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O26:H11 str. 11368]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|237746076|ref|ZP_04576556.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229377427|gb|EEO27518.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 790

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 128/251 (50%), Gaps = 16/251 (6%)

Query: 540 LTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +VT+    ++ L E+   LR       +A+++K+ F+  +S+++R+P+  I G   
Sbjct: 241 LDITDVTELRDLQKKLEERTAMLRNALEMAERANQVKSDFLARMSHDIRTPMNAITGLIS 300

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           + +      +  ++   +  +  SS  LL+L+NDILD++ +++G M+L          ++
Sbjct: 301 IARDCVNDPVKIREC--LNKLEFSSGSLLSLINDILDMSKIESGRMELKKREFSFVAFID 358

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           ++  ++  +  +  I   V I++     +  D  +L QI S +LSNA+ F+  G  V L+
Sbjct: 359 DIVSAVYAQAQKKRIGFHVEIAENVRELYSGDALKLKQIVSNLLSNAIKFTDSGGRVELQ 418

Query: 712 AA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFI 765
                  +   + +F+V +NG  +  D+ + VF  F  +  HR  R G GLGL+IV S++
Sbjct: 419 VEEGQRIKRTCELVFTVSDNGIGMEPDVIERVFLPFEQDVRHRENRGGSGLGLAIVHSYV 478

Query: 766 NLHGGHVSISS 776
            L  G V + S
Sbjct: 479 QLMNGRVDVES 489


>gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
 gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
          Length = 867

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 176/363 (48%), Gaps = 40/363 (11%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENR------LSPGTHIRNIAATCS 488
            +  +H  + + +  P G+I   NPAF +L  +   E R      L  G + +N+     
Sbjct: 242 AQVAEHARDAIIITDPVGKITWVNPAFETLTEYSLAEARDKTLSELLQGPNTQNV----- 296

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FV---- 543
           +    SD       + T   +  KS Q           E  + P+ N    +  F+    
Sbjct: 297 QLQKFSDSIQNHQPVRTEVLNYTKSNQPYWG-------ERDLSPVMNEHGQVQRFIVVER 349

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++ +  E+ L+++ +   +A + K+ F+ ++S+E+R+P+  I+GF+++L  S+     
Sbjct: 350 DISERIEIEKKLSDEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEILLESE---KR 406

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q   +  +  S+  L+ L+NDILD + V+AG + L      L +L   V+ S A   +
Sbjct: 407 NEQRSLLHLLHKSAGNLITLINDILDYSKVEAGKLTLIEEPFDLREL---VESSTALCAY 463

Query: 664 ENNIR-IKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDN 716
           + N + +K++ D  L      + DR R+ QI   ++ NA+ F+ +G  +I    K     
Sbjct: 464 QANKKDLKLLVDMPLDIHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITEKRTPQG 523

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             + F V + G  IPE+    + ++F  V N+   +  G GLGL+I +  + ++GG +S+
Sbjct: 524 NVYCFDVIDTGIGIPEERLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQMYGGDLSV 583

Query: 775 SSS 777
           +S+
Sbjct: 584 TST 586


>gi|104773777|ref|YP_618757.1| two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513783|ref|YP_812689.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103422858|emb|CAI97518.1| Two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116093098|gb|ABJ58251.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 521

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L   NE ++  +E ++ F+Q V++E+R+PLT I G  + +K   +   +  +S  ++ 
Sbjct: 265 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 322

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  L+ LVN+ LD   + +G +++  S      ++N+V+Q +     +N  +I + 
Sbjct: 323 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNAWTIMNDVQQQLTQNAAKNGDKIILD 382

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L  + AD+ R  Q+   +  NA+ F++ G T+ L+  R      FSV++ G  + +
Sbjct: 383 APEDLPVY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRFQHGATFSVQDTGIGMTQ 440

Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
           +  K +F RF     + A  G     GLGLSIV S +  HGG +  IS   EG T
Sbjct: 441 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIKVISKPHEGST 495


>gi|117924952|ref|YP_865569.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608708|gb|ABK44163.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 837

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 16/270 (5%)

Query: 533 LPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           L NA   L F     ++++   AE+AL     +   A + K+ F+  +S+E+R+P+T I+
Sbjct: 254 LTNAGEKLGFRTSIRDISERREAEQALEAAKRSAETASKAKSRFLSTMSHEIRTPMTAIL 313

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L+  + L  +   Q ++V  I  S   LL L++DIL ++  +            ++
Sbjct: 314 GVAELMSGTHLDRV---QREHVSIIRRSGDALLELIDDILVISQNEGAQEGEKQVVFDVD 370

Query: 649 DLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            LL  V    + +  E  I+ +  ++       + D  RL Q+   ++ NA+ FS KG  
Sbjct: 371 HLLESVMDMASYRATEKGIKLLSHVAALVPVRVMGDPVRLRQVLINLVGNAIKFSEKGEV 430

Query: 708 VI-LKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
           VI ++    NG    D+ FSV +NG  IP +  +++F+ F        RR  G GLGL+I
Sbjct: 431 VIQVRPGPRNGPERSDYRFSVSDNGIGIPMEKREAIFDAFSQVDETESRRFGGTGLGLTI 490

Query: 761 VESFINLHGGHVSISSSDEGV-TTINCRIP 789
               +NL GG + +  S+ GV +T    IP
Sbjct: 491 CRRLVNLMGGQLELLFSEPGVGSTFAFDIP 520


>gi|288941589|ref|YP_003443829.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896961|gb|ADC62797.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 755

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + ERA  E   A   A   K+ F+ H+S+ELR+PL  +IG T +L+ +   +L 
Sbjct: 136 DITERKQTERAQVEAKLAAEAATAAKSDFLAHMSHELRTPLNAVIGLTQVLEQA---NLP 192

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   V+ I  +   +L + NDILDLA ++A  + +      L+ LL  ++        
Sbjct: 193 LEQRSLVQRIRLAGQAMLQISNDILDLAKIEANQLAIASRPCTLSGLLQRLESLQGEAAR 252

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGD 718
              + +++     L G  + D  RL QI + ++SNA+ F+ +G+    T  L  +  +  
Sbjct: 253 AKGVTLEIAPAPALSGQVLTDPLRLEQILANLVSNAIKFTDRGTVRVWTETLSVSESSAR 312

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I     + +F  F+       RR  G GLGLSI +  + L GG + + S
Sbjct: 313 LRFVVRDTGIGIAPSALEQLFTPFIQADSSITRRFGGTGLGLSISKRLVELMGGTIGVES 372

Query: 777 SD 778
            +
Sbjct: 373 CE 374


>gi|220905438|ref|YP_002480750.1| Hpt sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869737|gb|ACL50072.1| Hpt sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 1007

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 15/228 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASST 618
           E  ++A  +++ F++ +S+E+R+PL  IIG + L L+T     LN  Q  Y+  I+ S +
Sbjct: 311 ELAQRASHVQDDFLRRISHEIRTPLNAIIGMSYLSLQTD----LNGVQRDYLAQINKSGS 366

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL++VN ILD ++   G ++       + DL++ ++QS+A    E  +R+  + D  + 
Sbjct: 367 VLLDMVNRILDFSSASEGSIRTERKVFAVADLMDLLRQSVAGLALEKRLRLNFVLDPSIP 426

Query: 679 SFVA-DRQRLLQIFSKILSNAMDFSSKGST--VILKAA-----RDNGDFIFSVKNNGSSI 730
           + VA D + L ++   +L NA+ +++ GS    IL +      +     +F V + G  +
Sbjct: 427 AVVAGDERHLEEVLRILLDNAVKYTASGSVDFRILPSGEPPMRKGAIRLLFVVSDTGPGL 486

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            E+  K +F  F        R   G+GLGL++    ++L GG + + S
Sbjct: 487 GEEQWKKLFEPFTLGDESMTRSFSGLGLGLALARQLVSLMGGELKVGS 534


>gi|317489211|ref|ZP_07947728.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325832247|ref|ZP_08165246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|316911612|gb|EFV33204.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325486083|gb|EGC88537.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 554

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 120/223 (53%), Gaps = 11/223 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R ++E K+ F+ ++S+++R+P+  I+G T + + S  G  + K +  ++ I+ASS  LL 
Sbjct: 171 RSSNEAKSQFLANMSHDIRTPINAIVGMTKIARES--GEASEKIAGCLDAITASSRHLLE 228

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           L+ND+LD++ +++G M+L      ++D++  V+  I  +    +  +++  S  K  +F 
Sbjct: 229 LINDVLDMSRIESGQMELQERRFDIDDVVGGVEAIIRPQAQAKSQELRIDCSKMKHKAFS 288

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMC 735
            D  R+ QI   + SNA+ ++ +G T+ L      K         F++ +NG  +  +  
Sbjct: 289 GDELRISQILLNLASNAVKYTQEGGTIALVVQELAKTRPSYASVAFTITDNGMGMSPEFV 348

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F+ F  +      R  G GLG+SI ++ I+  GG V + S
Sbjct: 349 ERIFDPFERSEEVSIARIQGTGLGMSITKALIDAMGGIVEVDS 391


>gi|237726273|ref|ZP_04556754.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D4]
 gi|229434799|gb|EEO44876.1| two-component system response regulator sensor kinase [Bacteroides
           dorei 5_1_36/D4]
          Length = 748

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 8/254 (3%)

Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             YS++       ++T   VN+ +    E  L    +   +A E+K SF+ ++S+E+R+P
Sbjct: 485 FRYSVLQHYEQNPIITGLLVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTP 543

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+GF++LL T K  S   K+ ++   I  ++ +LL LVND+L+L+ +++G M  +  
Sbjct: 544 LNAIVGFSNLLTTEKNISEEEKK-EFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCE 602

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
               +     V Q+    +      IK   D  +   + DR RL Q+ +  L NA  F+S
Sbjct: 603 DCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHI-DRMRLTQVITNFLGNAKKFTS 661

Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           +G   +     ++  +  F V++ G+ IP++  + +F RF       Q  GVGLGL+I +
Sbjct: 662 QGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAISK 719

Query: 763 SFINLHGGHVSISS 776
             +    GH+ + S
Sbjct: 720 VIVEKMNGHIDVQS 733


>gi|124385026|ref|YP_001026472.1| sensor histidine kinase/response regulator [Burkholderia mallei
           NCTC 10229]
 gi|238562264|ref|ZP_04609990.1| sensor histidine kinase/response regulator [Burkholderia mallei GB8
           horse 4]
 gi|251767545|ref|ZP_04820150.1| sensor histidine kinase/response regulator [Burkholderia mallei
           PRL-20]
 gi|254177707|ref|ZP_04884362.1| sensor histidine kinase/response regulator [Burkholderia mallei
           ATCC 10399]
 gi|254358734|ref|ZP_04975007.1| sensor histidine kinase/response regulator [Burkholderia mallei
           2002721280]
 gi|124293046|gb|ABN02315.1| sensor histidine kinase/response regulator [Burkholderia mallei
           NCTC 10229]
 gi|148027861|gb|EDK85882.1| sensor histidine kinase/response regulator [Burkholderia mallei
           2002721280]
 gi|160698746|gb|EDP88716.1| sensor histidine kinase/response regulator [Burkholderia mallei
           ATCC 10399]
 gi|238523016|gb|EEP86457.1| sensor histidine kinase/response regulator [Burkholderia mallei GB8
           horse 4]
 gi|243062373|gb|EES44559.1| sensor histidine kinase/response regulator [Burkholderia mallei
           PRL-20]
          Length = 639

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 17  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 69

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 70  GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 129

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 130 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 189

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 190 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 248

Query: 783 TINCRI 788
           T   RI
Sbjct: 249 TATARI 254


>gi|15601465|ref|NP_233096.1| sensor protein TorS [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|254849869|ref|ZP_05239219.1| sensor protein TorS [Vibrio cholerae MO10]
 gi|9658128|gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254845574|gb|EET23988.1| sensor protein TorS [Vibrio cholerae MO10]
          Length = 1020

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 122/217 (56%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L S Q  YV+ I+ S   LL +
Sbjct: 501 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 557

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L++E  + + ++  E  I +    D  +  +   
Sbjct: 558 LNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQG 617

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 618 DEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 677

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 678 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 713


>gi|317478861|ref|ZP_07938012.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905037|gb|EFV26840.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 758

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 130/251 (51%), Gaps = 8/251 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ +    E+ L E  E   +A E+K SF+ ++S+E+R+PL  I+GF+D+L      S N
Sbjct: 514 NIQELKDHEQELIESRELAEQA-ELKQSFLNNMSHEIRTPLNAIVGFSDMLANEPEFS-N 571

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ ++V+ I+ ++ +LL LV D+L+L+ +++G +   +    ++ LL++V Q+ +  + 
Sbjct: 572 EERQEFVDIINTNTKLLLKLVGDVLELSRIESGNLSFTFQRESVHRLLDDVYQTHSLLIR 631

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIF 721
                +K      +   V D  RL Q+ +  L+NA  F +KG ++ L     +G  +   
Sbjct: 632 PPLQFLKDFPPEDVQVNV-DPMRLTQVLTNFLNNANKF-TKGGSIRLGYCCPSGMSEVHL 689

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G  IP    K +F RF   +   Q  GVGLGLSI    +   GG + + S +   
Sbjct: 690 YVEDTGIGIPHSEQKMIFERFYKRSEFSQ--GVGLGLSICVLIVEKMGGRIELRSEEGRG 747

Query: 782 TTINCRIPSKE 792
           +     +P  E
Sbjct: 748 SRFTVVLPCIE 758


>gi|254467263|ref|ZP_05080674.1| virulence sensor protein BvgS [Rhodobacterales bacterium Y4I]
 gi|206688171|gb|EDZ48653.1| virulence sensor protein BvgS [Rhodobacterales bacterium Y4I]
          Length = 804

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 189/409 (46%), Gaps = 25/409 (6%)

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            KD    P    LH++    P    + M E++T +   +       +   + ++ L++G 
Sbjct: 259 RKDGSCYPVSIKLHLLEADRPL--YVAMVEDITEKRADQEAARLANERLSDAVEALADGF 316

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC--SRYYNESDGWDLFAAIIT 505
            +F  D R+ L+N  +  ++      + PG   R I  +   S+ Y   D  D  A I +
Sbjct: 317 VLFDKDERLVLANSTYSEMFPEGAEIVRPGVSYREIVTSLANSKVYGRPD-IDTAAFIES 375

Query: 506 SFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             +  R      L  +SD  VL+       +   +   V+VT+   A       N A   
Sbjct: 376 RMEVFRAGDASQLLRISDGRVLKAYDRRTADGGYVCLRVDVTELEEARAKAEAANAA--- 432

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
               K++F+ ++S+E+R+P+  I+G  DL+  +    L  +Q   ++ ++ASS  LL ++
Sbjct: 433 ----KSAFLANMSHEIRTPMNGILGMLDLIADTP---LTPEQQDMLQTVTASSETLLAIL 485

Query: 625 NDILDLATVDAGIMKLN---YSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ND+LDLA ++AG  +L+   +S   +   + ++ Q++A+      I  +V +  G     
Sbjct: 486 NDVLDLARIEAGREELDNAPFSPARVCRKVADLHQAVAS---HKGIAFEVDLGPGTEDPR 542

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ QI   +  NA+ F+  G  V L A    G  + SV + G+ + ED    VF+
Sbjct: 543 LGDARRIEQILHNLCGNALKFTEAGK-VRLSAWTGPGGLMLSVSDTGTGLTEDDQVRVFS 601

Query: 741 RF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  +        G GLGL+IV+  +   GG +S++S+    T I  ++
Sbjct: 602 KFEQAGPAASALGGTGLGLTIVKELVERMGGSLSVASAPSEGTEIQLQL 650


>gi|186894112|ref|YP_001871224.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           PB1/+]
 gi|186697138|gb|ACC87767.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
          Length = 924

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|148270267|ref|YP_001244727.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
 gi|147735811|gb|ABQ47151.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
          Length = 412

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 122/237 (51%), Gaps = 13/237 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           RK DE++  F+  VS+ELR+PLT+I G+ + L       L  K+   ++++ I   S  +
Sbjct: 180 RKLDEMRREFIATVSHELRTPLTSIHGYAETLLED---DLEDKELVKRFLKIIEEESARM 236

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ND+LDL  ++   +      + L +++  V + I     EN + + V  +  +   
Sbjct: 237 TRLINDLLDLEKMEESEVNFEMKDVDLCEVIEYVYKIIQPIAEENEVDLVVECEDVVVR- 295

Query: 681 VADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736
             +++RL+Q+   ++ NA+ ++S   KG   +   A D  D+ +  V++ G  IP++   
Sbjct: 296 -GNKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVLEVEDTGPGIPKEAQS 354

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F +F  V  A   +  G GLGL+IV++ ++ HGG + + S     T +   +P +
Sbjct: 355 RIFEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGRIEVESEINQGTVMRVFLPKR 411


>gi|18252341|gb|AAL66202.1|AF386520_1 putative ethylene receptor [Pyrus communis]
          Length = 741

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 138/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
                +Q   VE I  SS +L  LVND+LDL+ ++ G ++L  +T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILRSSNLLATLVNDVLDLSRLEDGSLQLEIATFNLHSVFREVHNLIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
               + + ++ + + +D  + + + D +RL+Q    ++ NA+ FS +GS  I       +
Sbjct: 432 PVASVKKLSVTLNIAADLPMYA-IGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSE 490

Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + RD    DF              VK++GS I P+D+ K +F +F        R   G G
Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQTLATRNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + ++NL  GH+ I S   G
Sbjct: 550 LGLAICKRYVNLMEGHIWIESEGLG 574


>gi|307822681|ref|ZP_07652912.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307736285|gb|EFO07131.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 872

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 121/237 (51%), Gaps = 11/237 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E LR  D  K+ F+  +++ELR+PL  I     LLK  +  + + K +     I    T 
Sbjct: 503 ETLRLMDRRKDEFLAMLAHELRNPLAPIRNAVRLLKMQE--ATDPKLTLSCNIIDRQVTH 560

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L++D+LD+A +  G ++L      L D++N   ++ +  + E+  +  +IS      
Sbjct: 561 MTRLLDDLLDMARIMQGKIRLKIEHFELTDIVNNAIET-SRPLLESRKQELIISQTMTPQ 619

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           ++  D  RL Q+ S +L+NA  ++ +G  ++L   R   D +  +K+ G  I  D+   +
Sbjct: 620 WLEGDHVRLAQVLSNLLNNAAKYTGEGGKIMLSVMRKGSDAVIEIKDTGIGISPDILPQI 679

Query: 739 FNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV---TTINCRIPS 790
           F+ F    H     + G+G+GL++V   + +HGG V+ +S  EG+   +T   R+P+
Sbjct: 680 FDLFTQADHTLAHSQGGLGIGLTLVRQLVEIHGGTVTAAS--EGIGQGSTFTVRLPA 734


>gi|265751821|ref|ZP_06087614.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_33FAA]
 gi|263236613|gb|EEZ22083.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_33FAA]
          Length = 748

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 8/254 (3%)

Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             YS++       ++T   VN+ +    E  L    +   +A E+K SF+ ++S+E+R+P
Sbjct: 485 FRYSVLQHYEQNPIITGLLVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTP 543

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+GF++LL T K  S   K+ ++   I  ++ +LL LVND+L+L+ +++G M  +  
Sbjct: 544 LNAIVGFSNLLTTEKNISEEEKK-EFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCE 602

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
               +     V Q+    +      IK   D  +   + DR RL Q+ +  L NA  F+S
Sbjct: 603 DCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHI-DRMRLTQVITNFLGNAKKFTS 661

Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           +G   +     ++  +  F V++ G+ IP++  + +F RF       Q  GVGLGL+I +
Sbjct: 662 QGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAISK 719

Query: 763 SFINLHGGHVSISS 776
             +    GH+ + S
Sbjct: 720 VIVEKMNGHIDVQS 733


>gi|187730064|ref|YP_001880809.1| hybrid sensory histidine kinase TorS [Shigella boydii CDC 3083-94]
 gi|187427056|gb|ACD06330.1| sensor histidine kinase/response regulator TorS [Shigella boydii
           CDC 3083-94]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|162449526|ref|YP_001611893.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161160108|emb|CAN91413.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1693

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 40/283 (14%)

Query: 517  TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             LELLSD +     I L NA                R   E   A+R    +++ F+   
Sbjct: 1428 VLELLSDQI----AIALENA----------------RLYREAQHAVR----VRDEFLSVA 1463

Query: 577  SYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            S+ELR+P+T++ +G   LL+     S + + ++ ++ +      L+ L++D+LD++ +  
Sbjct: 1464 SHELRTPVTSLRLGLQALLRRGDHAS-DERLARALQRMDRQVQRLVRLIDDVLDVSQLHT 1522

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKI 694
            G ++L+   + L +++++V + +  ++  +   + V ++  + GS+  DR RL Q+ S +
Sbjct: 1523 GRLELHVEPVDLAEVVDDVLERLTERIAHSGSSVSVRAEPSVVGSW--DRSRLEQVVSNL 1580

Query: 695  LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQR 751
            L NA+ F + G  + +  AR +G     V++ G  IP      VF+RF   VS+ H G  
Sbjct: 1581 LDNALKFGA-GKPIEVSVARKDGTAELVVQDQGIGIPAGRLPHVFDRFERAVSSRHFG-- 1637

Query: 752  RGVGLGLSIVESFINLHGGHVS-ISSSDEGV---TTINCRIPS 790
             G+GLGL +V+S +   GG V  +S  DEG      + C  P+
Sbjct: 1638 -GLGLGLHVVKSIVEALGGAVRVVSRPDEGARFTVELPCERPA 1679


>gi|160935826|ref|ZP_02083201.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441570|gb|EDP19280.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC
           BAA-613]
          Length = 928

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 128/240 (53%), Gaps = 11/240 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  +AL +  +A + A++ K +F+  +S+++R+P+  IIG   ++  + L S    
Sbjct: 395 TEQARQRQALEDACQAAQIANDAKTNFLSSMSHDIRTPMNAIIGMA-VIAQANLQSPEKI 453

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   +  I+ SS  LLNL+N++LD++ +++G + L    + L +L+ +V         E 
Sbjct: 454 QD-CLNKINVSSRHLLNLINEVLDMSRIESGKIDLISENVSLPELIEDVMDVFRPLAAEK 512

Query: 666 NIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGD 718
           ++ +++ +D  +    V D+ RL Q+   +LSNA+ ++ +G +V L+       A+  G 
Sbjct: 513 HLELQINADHVRHEKVVTDQNRLQQVLVNLLSNAIKYTPEGGSVGLRVREIPAFAKGKGQ 572

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + F V +NG  +  D    +F  F     +   Q +G GLG++I ++ +++  G + + S
Sbjct: 573 YEFIVTDNGIGMSGDFIPHIFEPFSRTEESKTNQIQGTGLGMAITQNIVSMMNGTIEVKS 632


>gi|157961008|ref|YP_001501042.1| hybrid sensory histidine kinase BarA [Shewanella pealeana ATCC
           700345]
 gi|157846008|gb|ABV86507.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 929

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 13/229 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L+S Q  Y+  I  S+T LL
Sbjct: 295 QEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYIRTIERSATNLL 350

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +++NDILD + ++AG M L      L + + E    +++   E  + + +  D ++   V
Sbjct: 351 SIINDILDFSKLEAGKMVLENIPFSLRETIEETVTMLSSSAREKELALVIDVDARIPEDV 410

Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCK 736
           + D  R  QI + ++ NA+ F+ KGS  +   L+  +D    I   + + G  + E    
Sbjct: 411 SGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEEVKDGKVHIRCEIIDTGIGVDEQQQS 470

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
           S+F  F        RR  G GLGL I +  +N  GG +   S  ++G T
Sbjct: 471 SLFQAFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCYSEPNQGST 519


>gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
           6803]
 gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
           6803]
          Length = 1209

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +   +AL    +A   A+  K+ F+  +S+E+R+P+  +IG T LL  + L   N++Q Q
Sbjct: 488 IEQNKALMTATKAAEDANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTHL---NTQQQQ 544

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I +S   LL+L+NDILD + +++G  KL      +   + E    +A +     + 
Sbjct: 545 FTETIRSSGEALLSLINDILDFSKIESGQFKLEIHPFEIQQCVEECLDLVAPQAFAKKLD 604

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIF 721
           +    + ++  + + D  R+ Q+   IL+NA+ F++ GS  +  +A      ++     F
Sbjct: 605 LVYQIEPQVPMAILGDLTRVRQVLVNILANAVKFTTSGSIQVRVSATVANQQQNKYTIQF 664

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           S+K+ G  I  D   ++F  F  V+ +   +  G GLGL+I +    + GG + + S  E
Sbjct: 665 SIKDTGIGISPDQQSALFKSFSQVNTSIARKYGGTGLGLAICKRLTEMMGGQIWVESYGE 724


>gi|325125439|gb|ADY84769.1| Histidine kinase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 521

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L   NE ++  +E ++ F+Q V++E+R+PLT I G  + +K   +   +  +S  ++ 
Sbjct: 265 RSLKASNEEVKAQEERRDQFMQDVAHEMRTPLTTINGLLEGMKYDAIPEESIPES--IDL 322

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  L+ LVN+ LD   + +G +++  S      ++N+V+Q +     +N  +I + 
Sbjct: 323 MSRETKRLIRLVNENLDYEKIRSGKIQMMKSQFNAWTIMNDVQQQLTQNAAKNGDKIILD 382

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L  + AD+ R  Q+   +  NA+ F++ G T+ L+  R      FSV++ G  + +
Sbjct: 383 APEDLPVY-ADQDRFKQMLVNLTQNAIQFTNNG-TITLRGRRFQHGATFSVQDTGIGMTQ 440

Query: 733 DMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
           +  K +F RF     + A  G     GLGLSIV S +  HGG +  IS   EG T
Sbjct: 441 EQSKYIFERFYKADPARARYGGTGESGLGLSIVLSLVRQHGGEIRVISKPHEGST 495


>gi|325090376|gb|EGC43686.1| histidine kinase [Ajellomyces capsulatus H88]
          Length = 2345

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 32/259 (12%)

Query: 552  ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL+   EA RK                 A + K+ F+ +VS++LR+P+  +IG ++LL
Sbjct: 1800 KRALSLAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELL 1859

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   +L+ +Q  YVE I   +  LL L+NDILD + ++AG MK++   + L + + EV
Sbjct: 1860 KKT---NLDREQDGYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEV 1916

Query: 655  KQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             +++     +  ++     DG   +   + D  RL QIF  +LSN+  F+ KGS  +   
Sbjct: 1917 VRALRYTHRDRGLQTIEDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAK 1976

Query: 713  ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
            A D  D        V + G  I  +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 1977 AADEDDGRIRITCKVADTGIGISGEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2035

Query: 766  -NLHGGHVSISSSDEGVTT 783
             ++ GG + +  S+EGV T
Sbjct: 2036 EDVLGGKIWL-QSEEGVGT 2053


>gi|212691439|ref|ZP_03299567.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
 gi|212666049|gb|EEB26621.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
          Length = 757

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 8/254 (3%)

Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             YS++       ++T   VN+ +    E  L    +   +A E+K SF+ ++S+E+R+P
Sbjct: 494 FRYSVLQHYEQNPIITGLLVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTP 552

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+GF++LL T K  S   K+ ++   I  ++ +LL LVND+L+L+ +++G M  +  
Sbjct: 553 LNAIVGFSNLLTTEKNISEEEKK-EFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCE 611

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
               +     V Q+    +      IK   D  +   + DR RL Q+ +  L NA  F+S
Sbjct: 612 DCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHI-DRMRLTQVITNFLGNAKKFTS 670

Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           +G   +     ++  +  F V++ G+ IP++  + +F RF       Q  GVGLGL+I +
Sbjct: 671 QGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAISK 728

Query: 763 SFINLHGGHVSISS 776
             +    GH+ + S
Sbjct: 729 VIVEKMNGHIDVQS 742


>gi|78356984|ref|YP_388433.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219389|gb|ABB38738.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 395

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 19/252 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL    E   +A+  K  F+ +VS+ELR+PL  ++G   LL ++   S++ +Q   +  
Sbjct: 143 RALERAKEKAEEANRAKTVFLANVSHELRTPLNGVLGMAQLLSST---SMSGEQRYLLAS 199

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KV 671
           +  S+  L +LV+DIL+ ++++AG+++ +    VL + L  + +       + NI     
Sbjct: 200 LKQSAGRLGSLVSDILEHSSLEAGMLRPSQDNFVLKEALAPLIRHFGAVADKKNILFTHT 259

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------RDNGDFI-- 720
           + DG   +   DR  L+QI   +L NA +++S G TV L  A          DN   +  
Sbjct: 260 VQDGVPRTLAGDRGALIQILHNLLDNACNYTSVG-TVDLHVALWTCENICTADNRKAVWL 318

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F V++ GS IPE     +F  F    H   +R  G GLGL++        GG +S  S 
Sbjct: 319 RFDVRDTGSGIPEAKGGDIFAPFSIAEHFLTKRLGGAGLGLAVARQLAERDGGEISFVSK 378

Query: 778 DEGVTTINCRIP 789
           +   +T +  +P
Sbjct: 379 EGVGSTFSVVLP 390


>gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1]
 gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1]
          Length = 1689

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 10/215 (4%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+  K+ F+ ++S+E+R+P+  IIG + L   + L     K+  Y+  +  ++  LLN++
Sbjct: 952  ANRAKSDFLANMSHEIRTPMNAIIGMSYLALQTDLAE---KRKDYIAKVHQAAGSLLNII 1008

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVAD 683
            NDILD + ++A  + + +    L+++L ++   I  K+ EN++R I  I+      F+ D
Sbjct: 1009 NDILDFSKIEANKLTVEHIEFDLDEVLTQLNNVIGFKVEENSMRLIYDIATDCPRYFIGD 1068

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVF 739
             QRL QI     +NA+ FS KGS ++L       +      F V ++G  IP D    +F
Sbjct: 1069 PQRLGQILLNYCNNAVKFSPKGSDILLSCQAELDKQGATLTFCVADDGIGIPLDKQARLF 1128

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            + F        R+  G GLGL+I +    L  G V
Sbjct: 1129 HSFEQGDTSTSRKYGGTGLGLAICKRLSELMQGEV 1163


>gi|28901084|ref|NP_800739.1| hypothetical protein VPA1229 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809597|dbj|BAC62572.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 882

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 133/252 (52%), Gaps = 22/252 (8%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+ 
Sbjct: 359 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 415

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661
            Q + V+ I  SS  LL L+NDILDL+ +++G ++L   ++V  D+   V QS+    +K
Sbjct: 416 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 472

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713
                + + +  D  + + V  D  R+ QI + ++SNA+ F+ +G  ++       L+  
Sbjct: 473 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYILVDVSYEEALEQG 532

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           R  G   F +K++G  I  D   ++F  F        R+  G GLGL+I    +++ GG 
Sbjct: 533 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 590

Query: 772 VSISSSDEGVTT 783
           + +++S +GV T
Sbjct: 591 L-VATSTKGVGT 601


>gi|23014940|ref|ZP_00054733.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum
           MS-1]
          Length = 1179

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 13/248 (5%)

Query: 554 ALTE-KNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           AL E + EA R+A EI      K+ F+ ++S+ELR+PL +++     L  ++ G+L+  Q
Sbjct: 498 ALEEARTEADRRAIEIEQASRYKSEFLANMSHELRTPLNSVLILARDLADNETGTLSDDQ 557

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +    I  S   LL L+ND+LDL+ V+AG M L+  TI   DL   ++        +  
Sbjct: 558 VESARIIHESGAHLLALINDVLDLSKVEAGKMSLDPVTIATADLAQVIRGRFGPVAADKG 617

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVK 724
           +   V S   L  +  ADR ++ QI + ++SNA+ F+ +G   +  A   +G  +  SV 
Sbjct: 618 LEFTVESAPDLPRTMKADRGKIEQIANNLVSNAIKFTPEGGVAVRLALDHDGQALALSVA 677

Query: 725 NNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  I PED  +  + F +  S+  R Q  G GLGL+I      L GG +++ S+ +  
Sbjct: 678 DTGIGILPEDRQRVFAAFEQADSSTSR-QFGGTGLGLTISRRLARLMGGDITLESNGDRG 736

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 737 SVFTLLMP 744


>gi|330828735|ref|YP_004391687.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328803871|gb|AEB49070.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 1082

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 10/216 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+E+R+P+ +IIG  + L  ++L      Q Q VE I+  +  L  L++++L
Sbjct: 498 KGEFLATMSHEIRTPMNSIIGMAEQLTFTEL---TQDQRQMVEVINRGAQGLHALIDNVL 554

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687
           D A ++AG M+L  +  ++ +LL+ V     +++H   +RI +  D  + + V+ D  RL
Sbjct: 555 DFAKLEAGKMQLEQAPFLVRELLDSVLIMTVSEVHRKGLRIYLWVDAGVAARVSGDALRL 614

Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI    +SNA+ F+ +G    S  +L          F V+++G  +  +    +FN F 
Sbjct: 615 RQILFNFVSNAIKFTERGFIEISVQLLVQGEGQQQLRFGVRDSGIGMSTEALGRIFNAFE 674

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
                  R   G GLGLSI ++   L GG + + S+
Sbjct: 675 QAESSTTRSYGGTGLGLSICQTLATLMGGEIRLESA 710


>gi|325921960|ref|ZP_08183768.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325547559|gb|EGD18605.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 913

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 9/221 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A  +K+ F+  +S+ELR+PL  I+G++ L+++      N  +   +  I  S+     ++
Sbjct: 526 ASRVKDEFLATLSHELRTPLNAILGWSRLMQSDIFEPANLGKGMVI--IERSARAQTQII 583

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +D+LD++ + +G ++L      +  L     E+ Q  A    E ++ +   + G+L  F 
Sbjct: 584 DDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPAAFA-REISLELDAPTQGELW-FF 641

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+ + +LSNA+ F++ G TV +    ++      V+++G  I  D    VF+R
Sbjct: 642 GDAGRLQQVLTNLLSNALKFTAPGGTVRVALDIEDERLRLCVQDSGMGIAADFLPHVFDR 701

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           F        RR  G+GLGLSI    ++LHGG +  SS  EG
Sbjct: 702 FRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSEGEG 742


>gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
 gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
          Length = 1078

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 16/299 (5%)

Query: 503 IITSFDDERKSLQG--TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKN 559
           I  +F+ ER  ++      LL +  LE S  P      +     VT  + + + AL    
Sbjct: 498 IRRAFEGERVVVEDRFVFGLLGERDLEVSYNPYREGDRITHVAVVTRDITSYKDALRRLE 557

Query: 560 EALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +A R+A+E    K++F+  +S+E+R+PL  I G +DLL  S+   ++ +  + +  I  S
Sbjct: 558 DARRQAEEASRAKSAFLASMSHEIRTPLNAITGMSDLLLLSR---VSPEVEEGLAIIKDS 614

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +  LL L+NDILDL+ ++AG ++L    +   DL+    +    +     +  ++ +S+G
Sbjct: 615 AGTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELRLSEG 674

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIP 731
                  D  R+ QI   +LSNA+ F+ +G   +        D  +     V++ G  IP
Sbjct: 675 LPPVVNGDPVRIRQILINLLSNALKFTEEGGVTLSVTGHRMYDRDWEVELVVEDTGIGIP 734

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  + +F  F        RR  G GLGLSI      + GG + +SS     +T  CRI
Sbjct: 735 PEKLERIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTIVVSSEVGRGSTFVCRI 793


>gi|299529743|ref|ZP_07043178.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           S44]
 gi|298722261|gb|EFI63183.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           S44]
          Length = 943

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 12/267 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L ++ +P  +   ++  + ++T     ER+L     A  + +E K  F   +S+E+R+P
Sbjct: 419 ILTFASMPYQSEDVVICGISDITVQKEVERSLRSAKLAADQVNEAKTMFFATLSHEIRTP 478

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G  +LL    L  LN +Q QY+  I  SS  LL  +ND LDL+ ++AG  +L  +
Sbjct: 479 LYGIVGTMELLA---LTGLNVQQQQYLNTIQQSSATLLRTINDTLDLSRIEAGRQELYIA 535

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFS 702
            +   +LL  V  + A +     + I  + D G   S  AD  R+LQ+ + ++ NA+ F+
Sbjct: 536 EVSPAELLERVVANFAARAQGKGLLIYGLCDVGVPSSVRADSARILQVLNNLVGNAVKFT 595

Query: 703 SKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
             G   +  +A +         F V + G  I  +    +F  +       +    G GL
Sbjct: 596 EAGRVAVRVSAENLQPGRIRLKFQVADTGVGIRAEAQAQLFEPYFRADASAKEDISGSGL 655

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTT 783
           GL+I     +L GG +S+  S++G+ T
Sbjct: 656 GLAICRRLSDLMGGSLSV-VSEKGLGT 681


>gi|218553582|ref|YP_002386495.1| hybrid sensory histidine kinase TorS [Escherichia coli IAI1]
 gi|218360350|emb|CAQ97900.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli IAI1]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|188576475|ref|YP_001913404.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520927|gb|ACD58872.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1131

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 12/238 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A  +K+ F+  +S+ELR+PL  I+G++ L+++      +  + 
Sbjct: 729 SLQAETAARAQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTHLGRG 785

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664
             +  I  S+     +++D+LD++ + +G ++L      +  L+    E+ Q  A    E
Sbjct: 786 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALA-RE 842

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + +    DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V+
Sbjct: 843 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPVGGTVRVAMDIEDERLRLCVQ 901

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I  D    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 902 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 959


>gi|220916365|ref|YP_002491669.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954219|gb|ACL64603.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 840

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 6/232 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +TE   A+R  DE+    +Q VS++LR+PL+ + +G   L +        ++  +    +
Sbjct: 596 VTELRRAVRNRDEV----LQVVSHDLRTPLSAVTLGAAALTRLPDGPEAAAQARRAAARL 651

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +A+   +  L++D+LDL T++ G + +        DLL E    +        + + + +
Sbjct: 652 AAAGRRMNRLIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSA 711

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     DR R+LQ+   + SNA+  + +G+  +   A+ +G  IF V++ G  IP+ 
Sbjct: 712 APGLPPVACDRDRVLQVLGNVASNAVKATEEGAVCLAAEAQADGAVIFRVRDTGPGIPDA 771

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
               VF+RF       + RG GLGL+I    +  HGG +   S+    TT++
Sbjct: 772 DLPHVFDRF-QRGSAARWRGSGLGLAIARGLVEAHGGRIWAESAPGAGTTVS 822


>gi|157158585|ref|YP_001462226.1| hybrid sensory histidine kinase TorS [Escherichia coli E24377A]
 gi|332279822|ref|ZP_08392235.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9]
 gi|157080615|gb|ABV20323.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           E24377A]
 gi|332102174|gb|EGJ05520.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 946

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 15/231 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +A+ IK+ F+  +S+ELRSPL  I+G+T LL+T KL     +++  V  I  +  +
Sbjct: 568 EKAERANRIKDEFLSILSHELRSPLNPILGWTQLLQTKKLEEQQVEEALAV--IERNVKL 625

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
              L++D+LD+A +  G + LN + + L+  +    + +       NI +KV +S+    
Sbjct: 626 QTQLIDDLLDMAKILRGKITLNMTPVDLSSTIKAAIEVVRMAAERKNISLKVNLSNN--C 683

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D+ R+ QI   +LSNA+ F+ +G  V++   + N     +V + G  I  +    +
Sbjct: 684 YIKGDQGRIQQIIWNLLSNAIKFTPEGGKVMINLEQVNQQVQITVTDTGKGIDPEFLPHI 743

Query: 739 FNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVSISS--SDEGVT 782
           F  F         H G   G+GLGLSIV+  ++ HGG +   S   D+G T
Sbjct: 744 FESFRQEDVSITRHYG---GLGLGLSIVKYLVDAHGGTIVADSLGEDKGAT 791


>gi|126440086|ref|YP_001058658.1| Signal transduction histidine kinase [Burkholderia pseudomallei
           668]
 gi|126219579|gb|ABN83085.1| signal transduction histidine kinase [Burkholderia pseudomallei
           668]
          Length = 644

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 17  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 69

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 70  GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 129

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 130 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 189

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 190 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 248

Query: 783 TINCRI 788
           T   RI
Sbjct: 249 TATARI 254


>gi|15893615|ref|NP_346964.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023168|gb|AAK78304.1|AE007547_1 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
          Length = 654

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 165/356 (46%), Gaps = 21/356 (5%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            ++ L +GV +   D ++   N A R ++   +++   G  I  I   C           
Sbjct: 279 VLEKLKDGVIIKNED-KVVFMNEAQRKMFGLTKDKTVEGIDINKIVHRCC---------- 327

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                  + ++E+K +    + L   V  + I       T+    +V+D +  +++  E+
Sbjct: 328 -----CKAQNNEKKIITAGGKELYLEVEAFGITINGERLTLDIVKDVSDEILVKKS-KEE 381

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISAS 616
            E ++K D++K  F  ++++ELR+P+  I     ++  +  K        ++Y++ +  +
Sbjct: 382 IEKVKKTDKLKGEFFTNITHELRTPINVIYSALQVMEMRIDKNNFDRRNLNKYMKVLKQN 441

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL ++++++D+  +D G +K   S   +  L+  +  SI   +HE  + +   +D +
Sbjct: 442 CYRLLRIISNLIDITKIDTGFLKPCVSNREIIGLIENITMSIVPYLHEKGMELVFDTDVE 501

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D   + +I   +LSNA+ F  +   V++         +  VK+NG  IP++  K
Sbjct: 502 EKYVQCDPDMVERIMLNLLSNAVKFRKEKGLVLVTIHDKGSRIVLKVKDNGIGIPKEKQK 561

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F RF  ++  H    +G G+GLS+V+S + ++GG +S+ S +   TT     P+
Sbjct: 562 MIFKRFKQINPLHVTPHQGSGIGLSLVKSIVEMNGGKISVESEENVGTTFIIEFPA 617


>gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 1079

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 131/243 (53%), Gaps = 15/243 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASS 617
           E    A+  K++F+ ++S+++R+P+  IIGFT L     L +++   +   Y+    ASS
Sbjct: 560 EKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTL----ALSNIDDTDRVKDYLGKTLASS 615

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGK 676
             LL+L+ND+LD++ +++G + L    + L+D+L+++K  ++ +++   + + + + D  
Sbjct: 616 NHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYAKQLELYMDAMDVT 675

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSI 730
                 D+ RL QI   +LSNA+ F+  G TV ++        R  G + F +K+NG  +
Sbjct: 676 DEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRGCGQYEFRIKDNGIGM 735

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  + +F  F     +     +G GLG++I ++ +++ GG + + ++    T     +
Sbjct: 736 SQEFAQKIFEPFERERTSTVSGIQGTGLGMAITKNIVDMMGGTIEVQTAQGKGTEFTVCV 795

Query: 789 PSK 791
           P +
Sbjct: 796 PMR 798


>gi|254787521|ref|YP_003074950.1| histidine kinase [Teredinibacter turnerae T7901]
 gi|237685843|gb|ACR13107.1| histidine kinase [Teredinibacter turnerae T7901]
          Length = 663

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 11/233 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K  F+  +S+ELR+PLT I+G+TDLL T    S +    +Y++ +S +   LL L+
Sbjct: 145 ASRAKTEFLTRLSHELRTPLTAILGYTDLLSTR---SKDEADQEYLQIVSHNGKHLLALL 201

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           ND+LDL+ ++AG +++  S   +    +++      K  +  +  +V   G+L   F  D
Sbjct: 202 NDVLDLSKIEAGKLEIEKSFFEIQPFFSDIYLLFNMKAKDKGLDFEVRLTGELRPVFYGD 261

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             RL QI   ++ NA+ F+S+GS +     I++   +       V + G  I  +    +
Sbjct: 262 ATRLRQIVLNLIGNAIKFTSQGSVIVEVSSIVENVGEEQQLRICVHDTGPGISSEQLDDI 321

Query: 739 FNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F   A + +    G GLGL+I    ++  GG +++ S+    +   C +P
Sbjct: 322 FLPFNQAASKSEASENGTGLGLTISRELVSRMGGQLTVESTLGVGSCFCCTLP 374


>gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 755

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 12/252 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +R + EK+ A   A   K+ F+  +S+E+R+P+  +IG T LL  ++   L  +Q +Y
Sbjct: 217 RGDRIIQEKHAAAAAAARAKDDFLAMMSHEIRTPMNGVIGMTGLLLDTE---LTPQQQEY 273

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  S   LL L+NDILD + ++AG + L      +   + +  + +A+++    I +
Sbjct: 274 TETIRKSGDSLLTLINDILDYSKIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIEL 333

Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFS 722
             V+      + + D  RL QI   +L NA+ F+  G  V+  +A          +  F+
Sbjct: 334 AGVVEPDVPQAILGDVTRLRQILVNLLGNAIKFTQSGEVVVNVSAEPFAADTPLYELSFA 393

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IP +    +F  F        R+  G GLGL I +    L GG + + S +  
Sbjct: 394 VRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGLGLVICKRLSELMGGRIWVESEEGQ 453

Query: 781 VTTINCRIPSKE 792
            +T    I ++E
Sbjct: 454 GSTFAFTIQAEE 465


>gi|332707689|ref|ZP_08427717.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332353598|gb|EGJ33110.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 656

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 64/307 (20%)

Query: 539 MLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--K 595
           +LT V ++T++  A+  L +  EA  +A+  K++F+  +S+ELR+PL  I+G + LL   
Sbjct: 342 VLTIVRDITENKLAQIELQQAKEAAEEANHAKSAFMASMSHELRTPLNGILGLSQLLWED 401

Query: 596 TSKLGSLNSKQSQYVEYISA------SSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +LG        Y E++S       S T LL L++D+LD++ ++AG M L   +  +  
Sbjct: 402 AEELG--------YDEFVSDLKEIWNSGTHLLTLISDVLDISKIEAGKMNLYLESFDVTT 453

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ E++      M + N  +K+ S   LG+ VADR +L Q+   +LSNA  F+  G T+ 
Sbjct: 454 LIVELESLAKPLMQKKNNSLKISSADSLGTMVADRTKLKQVLLNLLSNAAKFTETG-TIT 512

Query: 710 LKAARD-----NGD---------------------------------------FIFSVKN 725
               R+     NG                                         IFSV +
Sbjct: 513 FSIKREGSNHSNGKNELILELSQPYSRSSSASYTTIDIPTSSNTLANLESDHWLIFSVAD 572

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  +  +    VF  F    N+   +  G GLGLSI + F  + G  +++ S     +T
Sbjct: 573 TGIGMTPEQLNKVFQPFTQADNSTTKKYGGTGLGLSISQRFCQMMGCQITVESQIGVGST 632

Query: 784 INCRIPS 790
            + R P+
Sbjct: 633 FSIRCPA 639


>gi|302551344|ref|ZP_07303686.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302468962|gb|EFL32055.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1359

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 13/253 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R+   L EK   L  + + K+ F+ ++S+ELR+PL +++    LL  +  G L+ ++ Q+
Sbjct: 919  RSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQF 978

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +      +  +  
Sbjct: 979  ATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPLTLDRGLAF 1038

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDF 719
            +V + +       +D QRL QI   +LSNA+ F++ G   +          +  RD  D 
Sbjct: 1039 EVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTATGKVELRVDRVRDTEHRFVRDADDV 1098

Query: 720  I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I FSV + G  I  +    +F  F        R+  G GLGLSI      L GG +   S
Sbjct: 1099 IAFSVSDTGIGIAPEKLPVIFEAFAQADGTTNRKYGGTGLGLSISREIAGLLGGRIVAES 1158

Query: 777  SDEGVTTINCRIP 789
                 +T    +P
Sbjct: 1159 EPGKGSTFTLHVP 1171


>gi|296111123|ref|YP_003621504.1| two-component sensor histidine kinase [Leuconostoc kimchii IMSNU
           11154]
 gi|295832654|gb|ADG40535.1| two-component sensor histidine kinase [Leuconostoc kimchii IMSNU
           11154]
          Length = 361

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 138/274 (50%), Gaps = 10/274 (3%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           SD ++++     P  Q +   +NV++ + +  R + E+    R+++  K+  + ++S++L
Sbjct: 94  SDGIIDWRADYAPKTQAL---INVSNQIAKNTRQIREEE---RQSERSKDEMITNISHDL 147

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT IIG+  L++ +      +++++Y+      S  +  LV D+   +   A    L
Sbjct: 148 RTPLTAIIGYLGLVEMNADVLSPAERAKYIHTAYDKSNQMKVLVEDLFAFSQTQAHDAVL 207

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N +T+ L DL  ++  S   +  E  I +  I++ +     AD  +L ++   +++NAM 
Sbjct: 208 NMTTLSLGDLFAQLLASYEIEAQEKKIELTQITNPETIMLEADSDKLARVLMNLITNAMK 267

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           +    + V L A   +      V N+G+ IP      +F RF  V ++   +  G GLGL
Sbjct: 268 YGEGATFVKLTAQVKDKTVEIRVVNDGAKIPSKDIVDIFGRFYRVESSRNSKTGGTGLGL 327

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +IV+  I  H G V  ++SD+ +T+    +P K+
Sbjct: 328 AIVKGIIEQHQGSV-FATSDDDLTSFIVTMPLKQ 360


>gi|295084125|emb|CBK65648.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 513

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++       +++ +V 
Sbjct: 270 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 329

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS +S  L+ L++DILDL+ +++  +K  +S   LN L+ ++++  A K   + I IK 
Sbjct: 330 LISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPI-SEIEIKS 388

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----IFSVKNNG 727
           +   +      D  RL Q+    ++NA  F+ KG  +      DN +     IF V++ G
Sbjct: 389 LLPDEDVYINTDITRLKQVICNFINNARKFTQKGY-IHFGHTLDNRNADSVQIF-VEDTG 446

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           S IP++    +F+RF       Q  G GLGLSI ++ +    G +S+ S
Sbjct: 447 SGIPQECLNEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDISVKS 493


>gi|218694528|ref|YP_002402195.1| hybrid sensory histidine kinase TorS [Escherichia coli 55989]
 gi|218351260|emb|CAU96964.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli 55989]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--TLNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPSAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|206971505|ref|ZP_03232455.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206733490|gb|EDZ50662.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 385

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQETNIECRPSFPSQKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 274 DGEKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384


>gi|150390836|ref|YP_001320885.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950698|gb|ABR49226.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 586

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTIL 620
           +RK + +K+ F  +VS+ELR+PLT I GF + L++ +  SL+ K  +  +  I   +  L
Sbjct: 356 IRKLEALKSEFAANVSHELRTPLTLISGFVETLQSWE--SLDEKDRKMALNIIELETERL 413

Query: 621 LNLVNDILDLATVDAGIMKL-NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
             L+NDIL L+ ++  I +L  Y  + +  L+NEV+  ++    + NI++K   +  + +
Sbjct: 414 KRLINDILRLSEIE-NIQRLAKYEVLDIEGLINEVQYMMSGIAAKKNIQLKTHIEKNVHT 472

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              +     Q+   ++ NA+ ++  G  + + A  +  +    V +NG  IP++ C+ +F
Sbjct: 473 LFGNSDWFKQMLVNLIENAIKYTPTGGQIKVSAKNEQNEISIMVMDNGIGIPKEDCERIF 532

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF  V  A      G GLGL+IV+  +   GG + +SS     +    R+PSK
Sbjct: 533 ERFYRVDKARSRDVGGTGLGLTIVKHIVTEFGGTIEVSSKLNQGSHFKVRLPSK 586


>gi|194467517|ref|ZP_03073504.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri 100-23]
 gi|194454553|gb|EDX43450.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri 100-23]
          Length = 381

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 139/263 (52%), Gaps = 15/263 (5%)

Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N Q ++T VN + DS  A R++ ++    RK ++ K+  + +VS++LR+PLT+IIG+  L
Sbjct: 121 NQQHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGL 174

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +  S      +Y       +  +  LV+D+ +   V      +N   I LN L+ +
Sbjct: 175 IEDKQYRS-EEDILKYTHTAYEKAKQMKTLVDDLFEYTKVQQHGAPVNIMKIDLNQLIEQ 233

Query: 654 VKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  S   +     I I   VI +  +    AD ++L ++F+ ++SNA  + +  S + + 
Sbjct: 234 LTASFELEAQHRGIEITSSVIPNPLM--IEADPEKLGRVFNNLVSNAFKYGNGASYIRID 291

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHG 769
           A ++N   +  V N+G+ IPE     +F RF  + A R +   G GLGL+IV+S ++LH 
Sbjct: 292 ARQENDMVVVKVANDGTPIPEKALDHLFERFYRAEASRSRATGGTGLGLAIVKSIVDLHH 351

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G+V + +S+E  T     +P K+
Sbjct: 352 GNVKV-TSNEDETAFIVTLPLKQ 373


>gi|85705883|ref|ZP_01036979.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
 gi|85669471|gb|EAQ24336.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
          Length = 646

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 172/388 (44%), Gaps = 46/388 (11%)

Query: 417 ENLTVQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           EN  V+ DL   Y  +   +     +I+ + +G A F  D R+  +N A+ +++   E  
Sbjct: 59  ENQRVKSDLNDAYQKVEIAERRLWHSIETIQDGFAFFDADSRMIAANNAYLAVFDGLEA- 117

Query: 474 LSPGTH------------IRNIAATCSRYYNES--DGWDLFAA---IITSFDDERKSLQG 516
           + PG              + NI A     + E   D W  FA    +I  ++        
Sbjct: 118 VKPGVSYIEILQFITEEGVVNIGALKPHEWREKMLDRWQSFAPEPEVIRLWNGH------ 171

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            ++L+        ++ L         +N+TD++R E+ LTE       A+  K+SF+ ++
Sbjct: 172 YIKLIDQRGHGGDMVSLA--------LNITDTIRHEKELTEARRRAEAANRAKSSFLANM 223

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  ++G  +LL  +    L  +Q  +   I  S   LL ++ND+LD + ++A 
Sbjct: 224 SHEIRTPMNGVVGMAELLMET---DLTEEQRLFASTIKTSGEALLVIINDVLDYSKIEAE 280

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            + L+     L   ++E+   +     +  + + V  D  L + FV D  R+ QI + +L
Sbjct: 281 KLVLHAEPFDLERCIHELVTLMQVNARDKGLELLVDYDLFLPTRFVGDPGRIRQIMTNLL 340

Query: 696 SNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
            NA+ F+  G      T +   A        +V++ G  IP D    +F  F  V +   
Sbjct: 341 GNAVKFTESGHVLVRVTGVHPDAEGRASVHVTVEDTGIGIPPDKIDHIFGEFNQVDDERN 400

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  G GLGL+I +  I L GG + + S
Sbjct: 401 RKFEGTGLGLAISQKLIRLMGGKIWVDS 428


>gi|331676785|ref|ZP_08377481.1| TMAO reductase sytem sensor TorS [Escherichia coli H591]
 gi|331075474|gb|EGI46772.1| TMAO reductase sytem sensor TorS [Escherichia coli H591]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|295690287|ref|YP_003593980.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432190|gb|ADG11362.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 672

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 12/225 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             A  +A  +K  F+ ++S+ELR+PLT ++GF  L++      L+++   YV+ ++++  
Sbjct: 293 QAAAEEAAHVKADFLANMSHELRTPLTAVLGFAQLVERQP--ELSAETRAYVQRVTSAGK 350

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L   +NDILD + ++AG + +    + + +L  E     A +  E  + +++     L 
Sbjct: 351 ALRATINDILDFSKLEAGQVDIKPQPMSVAELTREAVDMFAAQAREKGVLLRLADLSDLP 410

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDM 734
             + AD  RL Q+   ++ NA+ F+  G   +   L A  D+   +F V + G  +  D 
Sbjct: 411 LLIEADPDRLRQVLLNLIGNAVKFTEVGEIAVQARLDARADH--IVFEVSDTGPGMSADQ 468

Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            K +F RF S    G  R   G GLGL+I +  +   GG + + S
Sbjct: 469 SKRLFQRF-SQVDAGAARKHGGTGLGLAICKGLVEAMGGSIGVDS 512


>gi|254161106|ref|YP_003044214.1| hybrid sensory histidine kinase TorS [Escherichia coli B str.
           REL606]
 gi|242376807|emb|CAQ31520.1| TorS monomer, subunit of TorS sensory histidine kinase [Escherichia
           coli BL21(DE3)]
 gi|253973007|gb|ACT38678.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli B str. REL606]
 gi|253977221|gb|ACT42891.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli BL21(DE3)]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|218688881|ref|YP_002397093.1| hybrid sensory histidine kinase TorS [Escherichia coli ED1a]
 gi|218426445|emb|CAR07271.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli ED1a]
          Length = 910

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1326

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 163/364 (44%), Gaps = 51/364 (14%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + EG+A     G I   NPA   +   ++  +  G H+ +     + +Y  SDG      
Sbjct: 455 VDEGIAGMDAKGYITFINPAGADMLGYDQAGIV-GAHLHS-----TIHYAHSDGSPY--- 505

Query: 503 IITSFDD---ERKSLQGTLELLSDSVL----------EYSIIPL----PNAQTMLTFVNV 545
              S DD    R ++ G    + D VL          EY+  P+        T++ F ++
Sbjct: 506 ---SRDDCPMYRTAITGEACAVDDEVLWRKDGGAFPAEYAATPVLKDGRAVGTVVAFRDI 562

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNS 604
           T+  + E  L    EA   A   K+ F+ ++S+E+R+P+  IIG + L LKT    +L+ 
Sbjct: 563 TERKKNEAELRRAREAAEDATRTKSDFLANMSHEIRTPMNAIIGMSHLALKT----NLSP 618

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI------VLNDLLNEVKQSI 658
           +Q  Y+  I  SS  LL ++NDILD + ++AG  KLN  +I      VL  L N + +  
Sbjct: 619 QQRDYLNKIQISSHHLLGVINDILDFSKIEAG--KLNVESIDFSLEKVLETLANLIGEKA 676

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           + K  E    I  IS     + + D  RL QI +   SNA+ F+  G  VI    ++  D
Sbjct: 677 SAKGLE---LIFDISPDVPHNLIGDPLRLGQILTNYASNAVKFTEHGEIVIGAKVQERTD 733

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 F+V++ G  +  +    +F  F        R+  G GLGL+I +    L  G V
Sbjct: 734 DEVLLYFAVRDTGLGLTAEQKARLFQSFQQADTSTTRKHGGTGLGLAISKQLSALMHGEV 793

Query: 773 SISS 776
            + S
Sbjct: 794 GVES 797


>gi|86356048|ref|YP_467940.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86280150|gb|ABC89213.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 760

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 10/256 (3%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           L   +V   V  ER + +  E+ R+  E     K+  +  VS+E+R+PL+ I+G T LL 
Sbjct: 211 LLLQSVARDVTEERLIAQSRESARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMTHLLA 270

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++L     +Q  Y+  I  S   L  LV D+LD +T++ G  +L+  +  L  LL  V 
Sbjct: 271 ETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFELHPRSESLRKLLESVV 327

Query: 656 QSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           + +A + HE  I I   +S     +   D  RL Q+   ++ NA+ F+  G  V ++ + 
Sbjct: 328 EMLAHRAHEKGIEIGATVSSDVPENMSFDAARLRQVLFNVIGNAVKFTQAGG-VFIRVSL 386

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVS 773
           + G+ + +V + G  +  +    VF  F    +   +  G GLGL+I    +    G ++
Sbjct: 387 NAGNLLITVTDTGPGMTAEEQARVFGEFEQGGNVADKSGGTGLGLAISARIMREFAGALT 446

Query: 774 ISSSDEGVTTINCRIP 789
           ++S     +T   R P
Sbjct: 447 VTSQKGKGSTFTIRFP 462


>gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 596

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 162/366 (44%), Gaps = 37/366 (10%)

Query: 434 KVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           K Q E I  H+++G+       RI   NPA + +++ +E           + A   R   
Sbjct: 250 KSQAEAILTHMADGLMALNRARRIIRLNPAAQRMFQIQE-----------LQALGRRPGE 298

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-----NAQTMLTFVNVTD 547
            ++G  L  A+  ++D  R S       L D VL+  I PL      +  T++ F ++T+
Sbjct: 299 LAEGSGLEEALEEAWD--RNSALTRQIRLKDRVLQAYITPLTGEGRHSGGTVVVFHDITE 356

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                         L + + ++  FV +VS+EL++PLT +  + + L          +  
Sbjct: 357 --------------LERLESMRREFVANVSHELKTPLTTVKSYVETLLDGAADDPEVR-D 401

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +++  +   +  +  LV D+L L  +D G ++ N     + +L+ E    +  +     +
Sbjct: 402 RFLRVVDGETERMARLVRDLLRLTQMDEGTLRWNVRPQDVGELVAETVGRLRVQADRKRL 461

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
            +    D +    + D  ++ Q+   +L+NA++F+  G  + +  A +  D +  ++ + 
Sbjct: 462 TVLCEVDPETPPALCDYDKIQQVVINLLANAIEFTPNGGQIRVSVAPEGADAVRVTIADT 521

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP      +F RF  V  A      G GLGLSI +  + L GG ++I+S  +  TT+
Sbjct: 522 GIGIPAQDLPRIFERFYRVDKARSRSMGGTGLGLSIAKQIVELSGGAIAIASEVDRGTTV 581

Query: 785 NCRIPS 790
              +P+
Sbjct: 582 TFTLPA 587


>gi|326798534|ref|YP_004316353.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
           sp. 21]
 gi|326549298|gb|ADZ77683.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
           sp. 21]
          Length = 1349

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 21/244 (8%)

Query: 553 RALTEKNEAL--------RKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +AL EKN+ +        +KA+++      K+ F+ ++S+ELR+PL +I+  + LL  + 
Sbjct: 643 QALEEKNQMILERNLEIQKKAEDLALSTKYKSEFLANMSHELRTPLNSILLLSRLLSENN 702

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G+L   Q +Y + I  S   LL L+++ILDL+ ++AG M L+Y  + L +++N+++   
Sbjct: 703 EGNLLEDQIEYAKVIQTSGNGLLTLIDEILDLSKIEAGKMTLSYEDVSLAEMINDLQNLF 762

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARD 715
                +  + +K   D    S +  D  RL QI   ++SNA+ F++KGS    +      
Sbjct: 763 GPMAVDKGLELKFDCDKTTFSKIQTDNLRLQQILRNLISNALKFTAKGSVTLSVYPNKEK 822

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
            G   F+V++ G  IP++  + VF  F   A    RR   G GLGLSI +    L GG +
Sbjct: 823 EGYLNFAVRDTGIGIPKEKHQLVFEAF-QQADGSTRRKFGGTGLGLSISKELAKLLGGSL 881

Query: 773 SISS 776
            I+S
Sbjct: 882 YINS 885


>gi|170761746|ref|YP_001785690.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408735|gb|ACA57146.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 464

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D++KN F+  VS+ELR+PLT+I G+   L ++++     K    ++ I   S  L  +
Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWAITLNSNEVDKEILKDG--LKIIEDESERLSGM 296

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G M+LN   I + ++++ V++ +    + N I  K     KL +   D
Sbjct: 297 VEELLDFSKFVSGKMRLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R R+ Q+   +L NA  F+ +G  V L    +       VK+ G  I ++    V  +F 
Sbjct: 357 RNRIKQVLINLLDNAFKFTPEGGLVELSTKYEEEYITIVVKDTGVGISKEDLPRVKEKFY 416

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G+ +  G+GLSI +  I LH G + I S +   TTI+ ++P
Sbjct: 417 K-GNSGKSKN-GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLP 460


>gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 477

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 162/363 (44%), Gaps = 25/363 (6%)

Query: 434 KVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           K + ETI + + EGV  F   GRI L N A   + + +  R      +R      +  + 
Sbjct: 135 KTKFETILESMIEGVVGFDHMGRILLMNSAAEQMLRVQSER------VRGKLLLEAFRHR 188

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRA 551
           E +G  L    + +   ++K +Q  L           ++P+  + + +L    V D V  
Sbjct: 189 ELEG--LLTQALNTGKAQKKQMQ--LWPNKPQTFRVQVVPVWTDQRRLLGAAMVIDDV-- 242

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
               TE    +R+ ++++  FV +VS+ELR+PLT+I GF + L    L      + +++ 
Sbjct: 243 ----TE----VRRLEQMRTEFVANVSHELRTPLTSIKGFVETLLDGALDDTKVAR-RFLS 293

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+  +  L  L+ D+L L+ +++ + ++      L   +  V+  +     +  I ++V
Sbjct: 294 IINEETQRLQRLIEDLLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEPIAADKRIALQV 353

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +  L         L Q+   +  NA+ ++ +G  V ++A R     I  V++ G  IP
Sbjct: 354 DVETNLPLLPLSPDNLKQVLVNLTENAIKYTPEGGQVSVRATRGCDSVILEVQDTGIGIP 413

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+    +F RF  V  A   +  G GLGL+IV+  I   GG V++ S     +T     P
Sbjct: 414 EESLPRIFERFYRVDKARSRELGGTGLGLAIVKHIIERSGGRVTVQSKVGVGSTFTVTFP 473

Query: 790 SKE 792
             E
Sbjct: 474 VAE 476


>gi|161984909|ref|YP_408631.2| hybrid sensory histidine kinase TorS [Shigella boydii Sb227]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|161486256|ref|NP_753053.2| hybrid sensory histidine kinase TorS [Escherichia coli CFT073]
 gi|306812567|ref|ZP_07446760.1| hybrid sensory histidine kinase TorS [Escherichia coli NC101]
 gi|222032709|emb|CAP75448.1| Sensor protein torS [Escherichia coli LF82]
 gi|305853330|gb|EFM53769.1| hybrid sensory histidine kinase TorS [Escherichia coli NC101]
 gi|307552818|gb|ADN45593.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           ABU 83972]
 gi|312945500|gb|ADR26327.1| hybrid sensory histidine kinase TorS [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 910

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|197122464|ref|YP_002134415.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196172313|gb|ACG73286.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 618

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 15/262 (5%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII-GF 590
           P+ +    + F + T  +R E       + LR+A   +   +  VS++LR+PL  I+ G 
Sbjct: 362 PVTDGGVAVFFRDATRRMRDE-------QRLRQAQAFEQQLIGIVSHDLRNPLNAILLGA 414

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLND 649
           + LL    L   N      +  I +++     L+ D+LDL      G + +      L  
Sbjct: 415 SSLLAREDLSDRNVAS---IARIRSAAERAARLIRDLLDLTRARLGGGIPVQPRPADLRQ 471

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +  +V   +     +  I ++   D   G +  D  R+ Q+   +++NA+ + ++G+ V 
Sbjct: 472 VAQQVVDELEPSYPDRPISVEAAGDTH-GQW--DPDRIAQVIGNLVTNALKYGARGTPVA 528

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           ++ A ++G+   SV N G+ IP +  +++F      A     R VGLGL IVE   + HG
Sbjct: 529 VRIAAEDGEVRLSVHNQGTPIPAETVRTIFEAGGRAAPDPTGRSVGLGLFIVERIADAHG 588

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G V + SS+E  TT    +P K
Sbjct: 589 GRVEVHSSEEDGTTFTVWLPRK 610


>gi|148657974|ref|YP_001278179.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148570084|gb|ABQ92229.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 1022

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 123/254 (48%), Gaps = 9/254 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T   + E AL +  E   +A+  K+ F+ ++S+ELR+PLT IIG+ DL+  S      
Sbjct: 479 NITVRKQTEEALRQAKEWAEEANRTKSRFLANMSHELRTPLTTIIGYADLITISVHSGEF 538

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            + +  +  +  +   LL ++ND+LDL+ ++AG M+++     +  L  EV  S+     
Sbjct: 539 DQVASDIARVRDAGKHLLAIINDLLDLSKIEAGRMEIHSERFSVRALAEEVIASMRVFAQ 598

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
           + N  + +  D  +    +D  R+ QI   ++ NA  F+  G+ V L  AR   D     
Sbjct: 599 KRNNDLTLNIDPTVEMMHSDDVRVRQILYNLVHNACKFTEDGA-VTLDIARTVSDHDHAA 657

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             +F++ + G  +  D    +F  F        R+  G GLGL++     +L GG ++++
Sbjct: 658 LLVFTISDTGIGMTADQIAGLFREFTQADSSTTRKYGGTGLGLALCRRLTHLLGGKITVT 717

Query: 776 SSDEGVTTINCRIP 789
           S     TT    +P
Sbjct: 718 SQPGVGTTFVVTLP 731


>gi|88606773|ref|YP_505514.1| sensor histidine kinase [Anaplasma phagocytophilum HZ]
 gi|88597836|gb|ABD43306.1| Sensor histidine kinase PleC [Anaplasma phagocytophilum HZ]
          Length = 470

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 5/246 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
           A   L EK E   K    K+ F+ +VS+ELR+PL +IIGF+++++   LG L N++  +Y
Sbjct: 217 ANLELQEKKENAEKESVSKSQFLANVSHELRTPLNSIIGFSEIVQRESLGPLGNAQYKEY 276

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ +   LL+L+NDILD +  +A  + +      L  +++     +  K  E  + +
Sbjct: 277 IKEINHAGVHLLSLINDILDFSKAEANKLSVELVKCDLRKIVDSCFNMMLPKAQEAKVEL 336

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K          + D +R+ Q+   IL+N+M F+ +   V L   +   + +  + +NG  
Sbjct: 337 KRDMPESQIVLMVDARRMKQVILNILTNSMKFTPEKGFVRLSVEKKQEEVVIEICDNGIG 396

Query: 730 IP-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           I  +D+ K  SVF +   + H  +  G GLGL + +  + L  G  SI       T +  
Sbjct: 397 IAQQDLYKVMSVFGQ-ADSTHSRKYEGTGLGLPLSKKLVELMNGTFSIKGEANLGTVVTL 455

Query: 787 RIPSKE 792
             P  E
Sbjct: 456 SFPCVE 461


>gi|83646964|ref|YP_435399.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635007|gb|ABC30974.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 792

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 137/253 (54%), Gaps = 16/253 (6%)

Query: 552 ERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           ER + EK+         +A++ K+ F+ ++S+ELR+PL  IIG++++L+   +   + ++
Sbjct: 257 ERKVVEKDLIATRNRAEEANKAKSRFLANMSHELRTPLNAIIGYSEMLQEV-VAEDDYER 315

Query: 607 SQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            + ++ I    ++   LL+L+NDILD++ ++AG M+++     + DL++EV  ++     
Sbjct: 316 EEILDDIGKVRSAGKHLLSLINDILDISKIEAGKMQISIEAFSMEDLVDEVAGALRLLAD 375

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GD--F 719
           E   ++ V   G +G   +D  ++ QI   +LSNA+ F+  G  V L   R++  G+   
Sbjct: 376 ERRNKLVVRGAGDVGVVHSDLVKVRQILFNLLSNAVKFTEDG-VVELICERESVAGEDWM 434

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +  V++ G  I +   K +F  F        RR  G GLGL+I  S+  + GG +++SS 
Sbjct: 435 LCKVRDTGIGISDRAIKELFRPFSQADPSTTRRYGGTGLGLAISRSYATMLGGEITVSSK 494

Query: 778 DEGVTTINCRIPS 790
           +   +    R+P+
Sbjct: 495 EGEGSEFCIRLPT 507


>gi|89107844|ref|AP_001624.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. W3110]
 gi|90111200|ref|NP_415513.2| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. MG1655]
 gi|157160513|ref|YP_001457831.1| hybrid sensory histidine kinase TorS [Escherichia coli HS]
 gi|170080652|ref|YP_001729972.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. DH10B]
 gi|188493988|ref|ZP_03001258.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           53638]
 gi|238900253|ref|YP_002926049.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli BW2952]
 gi|331641526|ref|ZP_08342661.1| TMAO reductase sytem sensor TorS [Escherichia coli H736]
 gi|17380324|sp|P39453|TORS_ECOLI RecName: Full=Sensor protein torS
 gi|85674812|dbj|BAA36135.2| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K12 substr. W3110]
 gi|87081816|gb|AAC74078.2| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. MG1655]
 gi|157066193|gb|ABV05448.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           HS]
 gi|169888487|gb|ACB02194.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli str. K-12 substr. DH10B]
 gi|188489187|gb|EDU64290.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           53638]
 gi|238861441|gb|ACR63439.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli BW2952]
 gi|309701271|emb|CBJ00571.1| Two-component sensor kinase and response regulator [Escherichia
           coli ETEC H10407]
 gi|323938097|gb|EGB34359.1| TMAO reductase sytem sensor TorS [Escherichia coli E1520]
 gi|323942907|gb|EGB39072.1| TMAO reductase sytem sensor TorS [Escherichia coli E482]
 gi|323962878|gb|EGB58453.1| TMAO reductase sytem sensor TorS [Escherichia coli H489]
 gi|323973132|gb|EGB68324.1| TMAO reductase sytem sensor TorS [Escherichia coli TA007]
 gi|331038324|gb|EGI10544.1| TMAO reductase sytem sensor TorS [Escherichia coli H736]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|219666355|ref|YP_002456790.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219536615|gb|ACL18354.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 582

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 6/235 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N  L++  + K  F+  VS+ELR+PLT II F ++L   K    +S + Q +  I 
Sbjct: 335 LEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFE-DSSEEQILCEIK 393

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S +LL+++N+ILDLA ++ G   L+  T+ L D++N V+  I      N+I +    +
Sbjct: 394 ENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIHLTARVE 453

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPE 732
             +     D +++ +I   +  NA+ F+  G  V ++A  A D      +V+++G  I +
Sbjct: 454 RGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIGISK 513

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           +    +F +F  V ++   Q  G GLGL++ +    LHGG +S+ S  ++G T I
Sbjct: 514 ENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKGSTFI 568


>gi|332707075|ref|ZP_08427133.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354100|gb|EGJ33582.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 907

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 11/244 (4%)

Query: 541 TFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +F  +   V A  A + E  +    A++ K+ F+ ++S+ELR+PL  I+G+  +LK    
Sbjct: 420 SFETLEQRVEARTAEIAEAKDKAEVANQAKSEFLSNMSHELRTPLNGILGYAQILKREH- 478

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L+ +Q+  +E I  S   LL L+NDILDL+ ++A  M+L    I   + L+ V   I 
Sbjct: 479 -NLSFRQTDGLEIIHKSGIHLLTLINDILDLSKIEARKMELYPDDIHFANFLDSVVGVIK 537

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD 715
            +  E +I  K  ++  L    +AD +RL Q+   +L NA+ F+ +G   +   +K  + 
Sbjct: 538 MRALEKDILFKYQTESNLPIGIIADEKRLRQVLLNLLGNAIKFTEQGQVTLGVRVKEYQV 597

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           N   I F + + G  +       +F  F       QRR  G GLGL+I +  + L GG +
Sbjct: 598 NTSTICFDIIDTGVGMNPQQLHKIFLPF-EQVGDTQRRSEGTGLGLAITKQLVELMGGEL 656

Query: 773 SISS 776
            ++S
Sbjct: 657 KVTS 660


>gi|291523435|emb|CBK81728.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 731

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 123/240 (51%), Gaps = 19/240 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+   TE  +    A++ K  F+ ++S+++R+P+  IIG T L++        +K  +Y
Sbjct: 307 KAKNVATEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHD--AGNKAKVIEY 364

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  SS  LL ++ND+LD++ ++AG     YS   + DL+ E+     ++++E    +
Sbjct: 365 ADKIDISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELNTIFHSQIYEKQQTL 424

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFS 722
            +I +     +V  D+  L+QIFS +LSNA+ ++ +G  +          +     + F 
Sbjct: 425 TIIKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYAKYRFL 484

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSISS 776
           V +NG  +  D   ++F+ F     R +R      +G GLG++I ++ +   GG + + S
Sbjct: 485 VSDNGMGMSADFKDTIFDAFT----RAERSLTNKIQGTGLGMAITKNLVEAMGGTIDVDS 540


>gi|256841371|ref|ZP_05546878.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737214|gb|EEU50541.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 638

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 129/248 (52%), Gaps = 19/248 (7%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +A++AL  + E+L +A       D +K+ F+ ++S+E+R+PL  IIGF+ L+  ++L   
Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ QY   I+ ++ +LL LVNDILDLA +++G +  +  +  L DL+  + +   + +
Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721
            E  I  K           +D++RL Q    IL NA+ F+S G   I  + + D  D   
Sbjct: 513 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYSADAQDVRL 571

Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I PED  +++F RF       Q  G GLGLSI ++ +    G + + S    
Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLQSEKNK 628

Query: 781 VTTINCRI 788
                CRI
Sbjct: 629 ----GCRI 632


>gi|251781094|ref|ZP_04824014.1| two-component sensor histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243085409|gb|EES51299.1| two-component sensor histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 459

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 151/308 (49%), Gaps = 27/308 (8%)

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           P T++  +A       N+    D   +     +DE  +L  TL  LS +        L N
Sbjct: 161 PLTNLNTVA-------NKMSNMDFTVSCDVDREDEIGNLARTLNFLSKN--------LQN 205

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A        +TD  +  + L E  E  RK + ++  FV +VS+EL++P+  I G+ + LK
Sbjct: 206 A--------LTDLKQKNQKLEEDIEKERKLENMRKEFVDNVSHELKTPIGIIEGYAEGLK 257

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +         Y+E I + S  +  LV ++L+L+ +++G +K    +  +N L++++ 
Sbjct: 258 DGIVSG--DDALAYLETIISESQKMNILVKNMLELSKLESGTIKPKLESFNINRLISKIL 315

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           ++   K  EN++++   S        AD  ++ Q+ + I++NA+ ++   + + +    +
Sbjct: 316 KNNHLKFEENHLKVNFNSSNPYSYVYADTFQMDQVITNIITNAIKYTPSHNLIDVSVNEE 375

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           N  F  S+KN G +IPE     +F++F  V  + +  +   GLGLSIV++ + LH    +
Sbjct: 376 NDKFKISIKNMGINIPESEINKLFDKFYRVDKSRQRTKDSTGLGLSIVKNILKLHNSEFN 435

Query: 774 ISSSDEGV 781
           + + D GV
Sbjct: 436 LKNIDNGV 443


>gi|207722544|ref|YP_002252980.1| sensor histidine kinase transmembrane (partial sequence n terminus)
           protein [Ralstonia solanacearum MolK2]
 gi|206587726|emb|CAQ18308.1| probable sensor histidine kinase transmembrane (partial sequence n
           terminus) protein [Ralstonia solanacearum MolK2]
          Length = 869

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N+  +L  V++ +    E  L E  +   +A+  K+ F+  V +E+R+PL   +G+ +LL
Sbjct: 466 NSAVLLGLVDMNERKANEILLMEAKQTADEANRAKSMFLAIVGHEIRTPLHGAMGYLELL 525

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S   SL+ +Q ++V+  S S   LL LVND+LD   ++A  ++++   +  N++L   
Sbjct: 526 ARS---SLSLEQREWVDLTSRSFDALLTLVNDLLDSTKLEANALQISPVPMCPNEVLERC 582

Query: 655 KQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +S    + +  +    I+D         D QRL QI   +LSNA  F+ +G+  I    
Sbjct: 583 ARSFGAAIVQGGVAFHCITDPDLDLVVDGDDQRLTQILQNLLSNAAKFTERGTITIASRC 642

Query: 714 --RDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
             R++G     F V + G  IP  M  ++FN          RR  G GLGL +  +  +L
Sbjct: 643 LKREDGKVWARFEVADTGIGIPAAMQSTIFNPLAQADDSISRRFGGTGLGLFLCRNLAHL 702

Query: 768 HGG 770
            GG
Sbjct: 703 MGG 705


>gi|168701006|ref|ZP_02733283.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 741

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E+   L++ D  K+ F+  +++ELR+PL  +     +L+ ++     +K+++  E + 
Sbjct: 364 VAERAARLKEQDRRKDEFLALLAHELRNPLAPLRNGLQVLRLTEGRGDAAKRAR--EMME 421

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              T  + L++D+LD++ +    + L  + + L +++    ++    + E      V   
Sbjct: 422 RQLTHTVRLIDDLLDVSRISRNKLNLRRTRVSLAEVVESAAETARPLIEEARHEFTVELP 481

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD  RL Q+FS +L+N+  ++  G  + L+A R +G  + +V++NG  IP D 
Sbjct: 482 PEPVFLDADLTRLAQVFSNLLTNSAKYTPPGGRIALRAERRDGALVVTVRDNGLGIPPDY 541

Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
              +F+ F S A R   R   G+G+GL++V+  + +HGG+V+ +S
Sbjct: 542 LPRIFDMF-SQADRVVERASGGLGIGLALVKGLVEMHGGNVAAAS 585


>gi|39997670|ref|NP_953621.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984562|gb|AAR35948.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298506611|gb|ADI85334.1| sensor histidine kinase response regulator, Hpt domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 850

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 17/247 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVE 611
           R L    E    A   K+ F+ ++S+E+R+PL  I+G TDLL     G LN ++Q QY+ 
Sbjct: 198 RDLAAAREQAESASRAKSDFLANMSHEIRTPLNGIMGMTDLLLG---GGLNQTQQHQYLG 254

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  L+ ++ DILD + ++AG ++L+     L   + +  +S++ +  E    +++
Sbjct: 255 AIKGSADCLMGVIGDILDFSKIEAGKVELDPVPFSLRTFVGQAVRSLSARAAEKG--VEL 312

Query: 672 ISDGK---LGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI---FSVK 724
           + D +   +   + D  +L Q+   ++ NA+ FS  G   V ++ A   G+ +   FSV 
Sbjct: 313 VCDPREDVIDPLIGDCGKLRQVLVNLVGNAIKFSDGGEVVVAVETAAVEGNEVLLRFSVS 372

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGV 781
           + G  I  +    +FN F        +R  G GLGL+I    + L GG + + S+  EG 
Sbjct: 373 DQGCGIAPEALDRIFNVFEQADSSTTKRFGGTGLGLAISRRIVQLMGGDIRVESAPGEGS 432

Query: 782 T-TINCR 787
           T    CR
Sbjct: 433 TFYFTCR 439


>gi|51595100|ref|YP_069291.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           IP 32953]
 gi|51588382|emb|CAH19990.1| bifunctional multimodular BarA: sensory histidine kinase in two
           component regulatory system, activates OmpR [Yersinia
           pseudotuberculosis IP 32953]
          Length = 942

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|323379162|gb|ADX51430.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|225560357|gb|EEH08639.1| histidine kinase [Ajellomyces capsulatus G186AR]
          Length = 2322

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 32/259 (12%)

Query: 552  ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL+   EA RK                 A + K+ F+ +VS++LR+P+  +IG ++LL
Sbjct: 1774 KRALSLAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELL 1833

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   +L+ +Q  YVE I   +  LL L+NDILD + ++AG MK++   + L + + EV
Sbjct: 1834 KKT---NLDREQDGYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEV 1890

Query: 655  KQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             +++     +  ++     DG   +   + D  RL QIF  +LSN+  F+ KGS  +   
Sbjct: 1891 VRALRYTHRDRGLQTIEDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAK 1950

Query: 713  ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
            A D  D        V + G  I  +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 1951 AADEDDGRIRITCKVADTGIGISGEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2009

Query: 766  -NLHGGHVSISSSDEGVTT 783
             ++ GG + +  S+EGV T
Sbjct: 2010 EDVLGGKIWL-QSEEGVGT 2027


>gi|221233560|ref|YP_002515996.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|220962732|gb|ACL94088.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 735

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 16/304 (5%)

Query: 499 LFAAIITSFDDERKSLQGTLELLS----------DSVLEYSIIPLPNAQTMLTFVNVTDS 548
             A    S  D+R SL   L  LS             LE     +P A T  TF ++TD 
Sbjct: 292 FIAGAFESRGDKRPSLDTELRFLSVDGDYRWMEGKGWLERDADGVPVALTS-TFRDMTDR 350

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              E +L         A   K++F+ ++++ELR+PLT++IGF + ++     +L+     
Sbjct: 351 HSLEESLIAARVRAEAAVRAKSAFLANMTHELRTPLTSVIGFAEQIQAEP--ALSPTVRH 408

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             + ISA    LL+ +NDILD + +++G + +  +   +N L+ E    ++ +     + 
Sbjct: 409 ASDRISAGGRALLSTINDILDFSKLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLS 468

Query: 669 IKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +       LG   A D Q + Q+   ++ NA+ F+ +G   +     D+G    +V + G
Sbjct: 469 LSYDGSAVLGLCAALDSQHVRQVLLNLIGNAIKFTEQGGVTVTAQRNDDGMLEIAVADTG 528

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ED  + +F RF        RR  G GLGL+I        GG + +SS+    +T  
Sbjct: 529 IGIAEDHLERLFGRFSQVDDTIARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFT 588

Query: 786 CRIP 789
             +P
Sbjct: 589 LTLP 592


>gi|110641175|ref|YP_668905.1| hybrid sensory histidine kinase TorS [Escherichia coli 536]
 gi|110342767|gb|ABG69004.1| sensor protein TorS [Escherichia coli 536]
          Length = 910

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|84623857|ref|YP_451229.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84367797|dbj|BAE68955.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1131

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 12/238 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A  +K+ F+  +S+ELR+PL  I+G++ L+++      +  + 
Sbjct: 729 SLQAETAARAQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTHLGRG 785

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664
             +  I  S+     +++D+LD++ + +G ++L      +  L+    E+ Q  A    E
Sbjct: 786 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALA-RE 842

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + +    DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V+
Sbjct: 843 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPVGGTVRVAMDIEDERLRLCVQ 901

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I  D    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 902 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 959


>gi|332519303|ref|ZP_08395770.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045151|gb|EGI81344.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
          Length = 1477

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 141/265 (53%), Gaps = 28/265 (10%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T     E  +    +A   A+  KN F+ ++S+E+R+P+  ++GF++LLK   L    
Sbjct: 1086 DITKQKLIEEEIINAKKAAESANLHKNYFLANMSHEIRTPMNGVLGFSELLKKDSLSK-- 1143

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK----QSIA 659
            + + +Y+E I ++S  LLNL++DI+D+A +++  +K+NY+   +  L+  ++    Q   
Sbjct: 1144 TDRLKYLEIIDSNSKQLLNLIDDIIDIAKIESNELKINYTECNVPKLIQNLQITYNQLKI 1203

Query: 660  TKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAA 713
             K+ +N      I +  K    + D QRL Q+ S +L+N++ FS KG+     TVI    
Sbjct: 1204 VKLKKNITFTTYIPENYKDLQIITDEQRLQQVISNLLNNSLKFSEKGNISFGFTVI---- 1259

Query: 714  RDNGDFI-FSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINL 767
               G F+ F VK+ G  I ++    +F RF      SNA  G   G GLGLSI +  + L
Sbjct: 1260 ---GKFLKFFVKDQGIGINKNKQLEIFERFKQLNYKSNAKYG---GTGLGLSISKGIVTL 1313

Query: 768  HGGHVSISSSDEGVTTINCRIPSKE 792
             GG ++++S +   +     IP KE
Sbjct: 1314 LGGDITVTSQENKGSMFEFTIPLKE 1338


>gi|324117144|gb|EGC11052.1| TMAO reductase sytem sensor TorS [Escherichia coli E1167]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|312143225|ref|YP_003994671.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311903876|gb|ADQ14317.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 525

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 129/254 (50%), Gaps = 7/254 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----TSKL 599
           ++T+ +RAE  + ++NE L  + +++  F  ++S+EL++PL  I     LL+     S+ 
Sbjct: 242 DITERLRAEEKIKKQNEELEYS-KLRTQFFANISHELKTPLNLIFSSLQLLEFYLYNSQT 300

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                K + Y++ I  +   LL LVN+++D+  ++     L+     +  L+ E+  +++
Sbjct: 301 YKDKDKINNYLKSIKNNGFRLLRLVNNLIDITRIEVDAFSLHRGNFDIVKLIREIVNTVS 360

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             + E     K I D        D   + ++   ++SNA+ FS++G  +IL   + +   
Sbjct: 361 DYLEEKERDFKFICDLDSAVIACDPFNIERVILNLISNAVKFSARGDQIILTLQKVDEAI 420

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SVK+ G  I ++    +F++F  V  + + +R G G+GLS+V+S I +HGG + + S 
Sbjct: 421 SLSVKDTGIGIEKENQAIIFDKFRQVDQSFKKKREGSGIGLSLVKSIIEMHGGKIELESD 480

Query: 778 DEGVTTINCRIPSK 791
               +     +P K
Sbjct: 481 YGYYSNFKVFLPFK 494


>gi|295090460|emb|CBK76567.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 373

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 127/249 (51%), Gaps = 7/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VN+   V   R L EK    R+A+  KN  + +V+++LR+PLT+IIG+ +LL + K    
Sbjct: 116 VNLNRMVEDIRRLMEKE---REAERTKNELITNVAHDLRTPLTSIIGYLELL-SGKTELP 171

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q +Y++   A +  L  L+ D+     ++ G + ++   + +  LL ++ +      
Sbjct: 172 PEIQKKYIDIAYAKAKRLEKLIEDLFGFTKMNYGKLSMHVGKVDIVKLLGQLLEEFYPNF 231

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N+  ++ S+       AD   L ++F  +++NA+ + + G  V+++    +     S
Sbjct: 232 VDRNLSYELHSNVPAKMIDADGNLLARLFDNLINNAIKYGADGKRVLVQIHAGDEVVSVS 291

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V N G  IP D    +FN+F  V  +      G GLGL+I +S +++HGG + + S  +G
Sbjct: 292 VTNYGYVIPADELPLIFNKFYRVEQSRSTHTGGTGLGLAIAKSVVDMHGGTIQVKSDLDG 351

Query: 781 -VTTINCRI 788
            V T+  ++
Sbjct: 352 TVFTVKLKV 360


>gi|260364062|ref|ZP_05776785.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260879934|ref|ZP_05892289.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260894610|ref|ZP_05903106.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308086459|gb|EFO36154.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308091851|gb|EFO41546.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308114097|gb|EFO51637.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 878

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 133/252 (52%), Gaps = 22/252 (8%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+ 
Sbjct: 355 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 411

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661
            Q + V+ I  SS  LL L+NDILDL+ +++G ++L   ++V  D+   V QS+    +K
Sbjct: 412 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 468

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713
                + + +  D  + + V  D  R+ QI + ++SNA+ F+ +G  ++       L+  
Sbjct: 469 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYILVDVSYEEALEQG 528

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           R  G   F +K++G  I  D   ++F  F        R+  G GLGL+I    +++ GG 
Sbjct: 529 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 586

Query: 772 VSISSSDEGVTT 783
           + +++S +GV T
Sbjct: 587 L-VATSTKGVGT 597


>gi|253996821|ref|YP_003048885.1| Osmosensitive K channel His kinase sensor [Methylotenera mobilis
           JLW8]
 gi|253983500|gb|ACT48358.1| Osmosensitive K channel His kinase sensor [Methylotenera mobilis
           JLW8]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 134/264 (50%), Gaps = 10/264 (3%)

Query: 515 QGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEAL--RKADEI 568
           +G L +L D+ L      I LP  + +L   +   ++  ER   +    EAL   +++ +
Sbjct: 624 RGVLVILPDTNLSKGNRTIFLPEQRQLLDTFSSQIAIAIERVHYVEVAQEALISMESERL 683

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +NS +  +S++L +PLT II     LK      +N K+ +YV  ++  S  + NLV ++L
Sbjct: 684 RNSVLSAISHDLNTPLTTIIAAAGWLKQET--EINDKRYEYVSMLNEQSIRMKNLVVNLL 741

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+A + +G +KLN    +L +++    ++++  + ++ I I +  D  L  F  D   + 
Sbjct: 742 DMARLQSGKVKLNKQWQLLEEVVGTSLRTMSEVVSKHTIVIDMPHDLPLIEF--DAVLID 799

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           ++   +L NA  +S  G+ + + A     D   SV + GS +PE++   +F +F      
Sbjct: 800 RVLCNLLDNASKYSPAGNRIFISARTQQNDVWISVADEGSGLPENLENQLFEKFTRGEKE 859

Query: 749 GQRRGVGLGLSIVESFINLHGGHV 772
             + GVGLGLSI ++ I  H G +
Sbjct: 860 SSKAGVGLGLSICKAIIEAHDGKI 883


>gi|239617944|ref|YP_002941266.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506775|gb|ACR80262.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 417

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  + ++  FV +VS+ELR+PLT+I G+ + L    L    + + +++  I   S  +  
Sbjct: 181 RNLELMRREFVSNVSHELRTPLTSIHGYAETLLEYDLSDEETVR-KFLRIIEGESARMTR 239

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+ND+LDL  ++AG ++L    + L+++   V + ++    E  + + +  D + G FV 
Sbjct: 240 LINDLLDLEKLEAGDIQLVLEDVELSEVGEYVIKIVSPLAEE--LGVSIYEDMERGVFVE 297

Query: 682 ADRQRLLQIFSKILSNAMDFSS----KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL+Q+   ++ NA+ ++S        V ++    N   +  V++ G  IPE+  K 
Sbjct: 298 GDFDRLVQLTLNLVDNAVKYTSVKEHGPKEVWIRVYTANNYAVLEVEDTGIGIPEEARKH 357

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F RF  V  A   +  G GLGL+IV+     HGG VS+ S     TT   R+P K+
Sbjct: 358 IFERFYRVDKARSRKMGGTGLGLAIVKLIAEKHGGTVSLDSEFGNGTTFKVRLPLKK 414


>gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 974

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 11/230 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL ++N AL++ D++K+ F+ + S+ELR+PL  IIG T+ L     GSL+  Q   +  
Sbjct: 301 QALEQQNAALQRLDQLKDEFLANTSHELRTPLNGIIGITESLIDGAAGSLSPVQIANLAM 360

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHENNIR 668
           + +S   L +L+NDILD A +    ++L+  ++    +   V    +  I  K  E N  
Sbjct: 361 VVSSGKRLNSLINDILDFAKLKNHDIELHRKSVDFRQITEVVLTLSRPLIQGKSLELNNE 420

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I     G  G    D  RL QI   ++ NA+ F+  GS  +    + N   + +V + G 
Sbjct: 421 IPADFPGIDG----DENRLQQIMYNLVGNAIKFTESGSITVSATQQQNMAEV-TVADTGI 475

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I  D  + +F  F  ++ +     RG GLGLSI +  I LHGG + + S
Sbjct: 476 GISPDKFEDIFKSFEQLNASVSYPSRGTGLGLSITKQLIELHGGRIRVES 525


>gi|163814661|ref|ZP_02206050.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759]
 gi|158450296|gb|EDP27291.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759]
          Length = 1297

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 118/221 (53%), Gaps = 17/221 (7%)

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            + K+ F+  +S+E+R+P+  IIG T++    +      K+ + ++ I ++S  LL ++ND
Sbjct: 921  QAKSDFLARMSHEIRTPMNGIIGMTEV--ALRPDQTEDKRIECLKKIDSASGYLLGILND 978

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RIKVISDGKLGSFVA 682
            +LD++ +++G MKL      + D++  +   +  KM+E +I     I ++ D   G    
Sbjct: 979  VLDMSKIESGKMKLVIDKCSIPDMMKNIDSIMDAKMNEKDITFVQNITLLHDWYYG---- 1034

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL QI   +LSNA+ +S+ G  V L          + D  F+VK+NG  IPE   + 
Sbjct: 1035 DELRLNQILVNLLSNAVKYSNLGGHVDLTVKELPVDEKHSDIYFAVKDNGIGIPESKQQL 1094

Query: 738  VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F RF    ++   +++G GLGL+I    +++    + ++S
Sbjct: 1095 IFQRFEQADDSANARKQGTGLGLAISSRLVHMMDSDIKVAS 1135


>gi|157148781|ref|YP_001456100.1| aerobic respiration control sensor protein ArcB [Citrobacter koseri
           ATCC BAA-895]
 gi|157085986|gb|ABV15664.1| hypothetical protein CKO_04614 [Citrobacter koseri ATCC BAA-895]
          Length = 778

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 30/242 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L S+Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTSEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++   D GD 
Sbjct: 381 VLDPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDV 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFDVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 SS 777
           S 
Sbjct: 491 SQ 492


>gi|22095653|sp|O48929|ETR1_TOBAC RecName: Full=Ethylene receptor; AltName: Full=NT-ETR1
 gi|2655061|gb|AAB97160.1| ethylene receptor ETR1 homolog [Nicotiana tabacum]
          Length = 738

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 132/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 313 ESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  +V   I 
Sbjct: 373 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHVLFRKVLNLIK 429

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
                 N   ++        F + D +RL+QI   ++ NA+ FS +GS  I   A     
Sbjct: 430 PIASVKNCLSRLTCLQICPEFAIGDEKRLMQILLNVVGNAVKFSKEGSVSISAVAAKSES 489

Query: 714 -------------RDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
                         +N  ++   VK+ GS I P+D+ K +F +F  N     +   G GL
Sbjct: 490 LSDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDIPK-LFCKFAQNQALATKSSGGTGL 548

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 549 GLAISKRFVNLMEGHIWIESEGLG 572


>gi|324009916|gb|EGB79135.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 57-2]
          Length = 900

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|168231939|ref|ZP_02656997.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472641|ref|ZP_03078625.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194459005|gb|EDX47844.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205333733|gb|EDZ20497.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 778

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 125/241 (51%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L  +Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTVEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|315296277|gb|EFU55583.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 16-3]
          Length = 900

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|297161562|gb|ADI11274.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1400

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 17/243 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R+   L EK   L  A + K+ F+ ++S+ELR+PL +++    LL  +  G L+ ++ Q+
Sbjct: 912  RSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNPDGRLSEQEEQF 971

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  S + LL L+NDILDL+ ++AG M +    + +  LL+ V  +      +  +  
Sbjct: 972  ATTIHRSGSDLLQLINDILDLSKIEAGRMDVRAKKLPVVKLLDYVNATFRPLAVDRGLSF 1031

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
            ++ + +       +D QRL QI   +LSNA+ F+S G  V L   R  G+          
Sbjct: 1032 EITVGEDVPREMFSDEQRLQQILRNLLSNALKFTSSGG-VKLHVERAPGEKFSEETLRSA 1090

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 FSV + G  IP +    +F  F  +     R+  G GLGLSI      + GG + 
Sbjct: 1091 DAVVAFSVTDTGIGIPPEKLSVIFEAFQQSDGTTSRKYGGTGLGLSISREIAGMLGGRIV 1150

Query: 774  ISS 776
              S
Sbjct: 1151 AES 1153


>gi|228940322|ref|ZP_04102893.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973238|ref|ZP_04133827.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979801|ref|ZP_04140123.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407]
 gi|228779955|gb|EEM28200.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407]
 gi|228786434|gb|EEM34424.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819448|gb|EEM65502.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 448

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+         + I S+ +NG  + ++    +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESNVIISISDNGIGMEQEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G V + S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTVRVELP 447


>gi|226358131|ref|YP_002787870.1| histidine kinase, hybrid [Deinococcus deserti VCD115]
 gi|226319774|gb|ACO47768.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115]
          Length = 1644

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 125/250 (50%), Gaps = 17/250 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A  AL EK   L    + K+ F+ ++S+ELR+PL +++     L+ +  G+L  +Q  Y 
Sbjct: 929  ARHALEEKAAQLALTSKYKSEFLANMSHELRTPLNSLLLLAHQLRDNPDGNLTDQQQAYA 988

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I A+   LL+L+NDILDL+ +++G +  + + + L  + + V  + A    +  + ++
Sbjct: 989  KTIYAAGNDLLSLINDILDLSKIESGTVSADLTEVPLRSVRDAVDTTFAHVASDKGVSLQ 1048

Query: 671  VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA------------RDN 716
            +     L  + + D +RLLQI   +LSNA  F+ KGS T+ ++ A            R  
Sbjct: 1049 LNFSADLPPTLLTDEKRLLQILKNLLSNAFKFTEKGSVTLQVEPALSGWSTEHSTLRRAP 1108

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F V + G  I  D  + +F  F        R+  G GLGL+I      + GG +++
Sbjct: 1109 SVVAFRVSDTGIGIAADKQRVIFEAFQQADGTTSRKYGGTGLGLAISRELARILGGEITL 1168

Query: 775  SSSDEGVTTI 784
             S+  GV ++
Sbjct: 1169 QST-PGVGSV 1177


>gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 146/290 (50%), Gaps = 43/290 (14%)

Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKAD---EIKNSFV 573
           ++ S+ P+  PN        N+   V  ER +T+K E       A  KAD   + K++F+
Sbjct: 363 IDVSVTPIFKPNG-------NIMHYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFL 415

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PL  I+G   +++++     + +Q + ++ +  S   LL+L+NDILD + +
Sbjct: 416 ATMSHELRTPLNGILGMAQIIESN---IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKI 472

Query: 634 DAGIMKLNYSTIVLNDLLNEVK---QSIATK-----MHENNIRIKVISDGKLGSFVADRQ 685
           +   ++LN+++   ND+++ +    QSI        + +NNI  K I       F+ D+ 
Sbjct: 473 EQNKLELNHASFYFNDVIDPIANTYQSICEDKGLQFIIDNNINEKTI-------FIGDKP 525

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           R+ QI   ++SNA+ F+ KGS  +       A+        V++ G  I +   K +F  
Sbjct: 526 RIRQIIFNLISNAVKFTHKGSITLNFSHTLTAKGEQAVQIKVQDTGIGIRKKRLKHIFEP 585

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+       R+  G GLGL+IV+   +   G++S++SS+   T     +P
Sbjct: 586 FIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635


>gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 800

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 166/359 (46%), Gaps = 44/359 (12%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFA 501
           SEG+A   P G ++  NPAF      +      GT ++++       RY +E        
Sbjct: 155 SEGLAAISPQGILEFLNPAFAQAHSHDSVAELVGTPLKSLFNPDELRRYESE-------- 206

Query: 502 AIITSFD------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--- 552
            I+ S +          +   ++EL  D  L +S      AQ+    ++  + V+ E   
Sbjct: 207 -ILPSMEFTGNWSGPFANRDISIELRPDGGLLFSS---KEAQSAPQALDTYEEVKQETEQ 262

Query: 553 ------RALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                 +A+ + N+A  +A+   + K+SF+  +S+E+R+P+  +IG T +L  ++   ++
Sbjct: 263 LYQQLDQAIAKANQAALEAELANQAKSSFLASMSHEIRTPMNAVIGLTGVLLETQ---ID 319

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  Y++ I AS   LL L+NDILD + +++  M+L    I     + E  + +A K  
Sbjct: 320 DDQRDYLQTIRASGDSLLVLINDILDFSKIESDKMELEERPIDPRCCVEEALELLAEKAS 379

Query: 664 ENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NG 717
              + +  +   D   G  + D  RL QI   ++ NA+ F+ KG   +L   R+    N 
Sbjct: 380 SKGLELCYEASEDIPFG-ILGDATRLRQILVNLIGNAIKFTEKGQIEVLLKTRETDQRNC 438

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              F+VK++G  IP D    +F  F  V ++   +  G GLGL+I +    L GG + +
Sbjct: 439 VIEFTVKDSGIGIPADKQSRLFKSFSQVDSSTTRKYGGTGLGLAISKKLTELMGGEMRV 497


>gi|254421818|ref|ZP_05035536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196189307|gb|EDX84271.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 614

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 26/250 (10%)

Query: 553 RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   E  EA R+A+E    K+ F+ + S+ELR+PL  +IGF  L+    L  +   + + 
Sbjct: 349 RKHQELEEAKRQAEEASRRKSDFLANTSHELRTPLNGMIGFLRLV----LDDMADDEEEQ 404

Query: 610 VEYISAS--STI-LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +E+I  S  S I LLNL+ND+LD+A ++A  M+L  S + L +L+ E+ +S  T +    
Sbjct: 405 LEFIQESHNSAIHLLNLINDVLDIAKIEANKMELELSAVSLKELMEEIDKSQRTHIENRG 464

Query: 667 IRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--- 721
           +   ++    L      ++ QRL Q+   ++SNA  F+ +G+ + + A  +   F F   
Sbjct: 465 LEFNIVLPATLDEIKLYSNYQRLKQVLLNLVSNASKFTHEGN-ITITAEINPQSFEFDKK 523

Query: 722 --------SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                   SV + G  +  +    +F  F  V +A   Q  G GLGL+I +  +   GG 
Sbjct: 524 TWPGLVKISVADTGIGVSLEKQDRLFQTFSQVDSARTRQYEGTGLGLAISQRLVEAMGGK 583

Query: 772 VSISSSDEGV 781
           V   S  EG+
Sbjct: 584 VKFISMGEGL 593


>gi|153809580|ref|ZP_01962248.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
 gi|149127783|gb|EDM19007.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
          Length = 917

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +D +K++F+ ++S+E+R+PL  I+GF+ L+          ++++Y+E I +++ +LL L+
Sbjct: 546 SDRLKSAFLANMSHEIRTPLNAIVGFSGLMVNC---DDPEEKAEYMEIIESNNDLLLRLI 602

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDL+ +++GI++       L  +  E+   I  K+    +   + + G       DR
Sbjct: 603 NDILDLSKIESGILERKREKFNLAKVSGELYTMIQPKITNPEVEFILGNSGPDCWIFLDR 662

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q++   L+NA+  +  G  + +  + +NG     V+++G  IP ++   VF RF  
Sbjct: 663 NRLKQVWMNFLTNAVKCTHSGH-IKMGYSLENGGIKVYVEDSGVGIPYEVQNRVFGRFQK 721

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                Q  G GLGL+I  + I   GG +  +S+    +T    IP
Sbjct: 722 LNEFAQ--GTGLGLAISRAIIEGAGGEIGFTSTPGVGSTFWAWIP 764


>gi|126656724|ref|ZP_01727938.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126621944|gb|EAZ92652.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 1302

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E   +A+ IK+ F+  +S+ELRSPL  I+G++ LL+  KL    + ++ +   I  ++ +
Sbjct: 927  EVAERANRIKDEFLAVLSHELRSPLNPILGWSQLLQVRKLDEAQTAEALHT--IERNAKL 984

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
               L++D+LD+A +  G + L  +++ L   +    +++       +I ++      +G 
Sbjct: 985  QTQLIDDLLDVAKILQGKLSLTMTSVNLAKTIEAAIETVKQTAKSKSIALES-QLPNIGQ 1043

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
               D  RL QI   +LSN + F+  G  V +   R        VK+ G  I  D    +F
Sbjct: 1044 VSGDEARLQQIVWNLLSNGIKFTPSGGQVKIHLKRVGSYAEILVKDTGKGISPDFLPHIF 1103

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
              F        R+  G+GLGL+IV   +  HGG +   S  EG+  T   ++P
Sbjct: 1104 ESFRQEDASITRKFGGLGLGLAIVSQLVEAHGGTIRAESPGEGLGATFTVQLP 1156


>gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
           4166]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 18/246 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERA +E        +E K+ F+  +S+E+R+PL  ++G   LL+ + L   +  Q  Y+
Sbjct: 399 AERAASE--------NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL---DRSQQFYL 447

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + IS+S   L+ ++NDILD A + +G + L      L  L++E  +    +  E  + + 
Sbjct: 448 DTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLH 507

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           V +  G       D  RL QI   +LSNA+ F+  G  ++  ++R   D     +F V +
Sbjct: 508 VGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEVSSRQTQDGSRRLVFCVSD 567

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  + +++   +F  F        RR  G GLGL+I +  + +  GH+ + S+    + 
Sbjct: 568 SGIGMRQEVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSR 627

Query: 784 INCRIP 789
               IP
Sbjct: 628 FCFEIP 633


>gi|229173899|ref|ZP_04301437.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3]
 gi|228609537|gb|EEK66821.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3]
          Length = 448

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y+  I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLRIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S + +N++ FS+ G T+           + S+ +NG  +  +    +F
Sbjct: 336 IQGDENLLHQVWSNVFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGMEREEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELP 447


>gi|163639425|gb|ABY28263.1| ethylene receptor ERS1b [Actinidia deliciosa]
          Length = 629

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 36/269 (13%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  + LL  ++L
Sbjct: 315 ESMRARDQLLEQNVALDFARQEAEMAIRARNDFLAVMNHEMRTPMHAIISLSALLLETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   +E I  SS +L  L+ND+LDL+ ++ G ++L      L+++  +V   I 
Sbjct: 375 ---TPEQRVMIETILKSSNLLATLINDVLDLSRLEDGSLELENGVFNLHEIFRQVVDLIR 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + + +I    L  + V D +RL+Q    I  NA+ F+ +G   I+      ++
Sbjct: 432 PIASVKKLSMTLILGPDLPVYAVGDEKRLIQTILNIAGNAVKFTKEGFVSIVASIAKPES 491

Query: 713 ARD---------NGDFIF----SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD         +GD  F     VK+ G  I PED+  S F +F  +     R   G GL
Sbjct: 492 LRDWRPPEFYPVSGDAHFFLRVQVKDTGCGINPEDIPLS-FTKFAQSRSGSSRNNGGAGL 550

Query: 757 GLSIVESFINLHGGHVSISS--SDEGVTT 783
           GL+I   FINL GGH+ I S   D+G+T 
Sbjct: 551 GLAICNRFINLMGGHIWIESEGPDKGITV 579


>gi|255009439|ref|ZP_05281565.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147205|ref|ZP_07809398.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313135972|gb|EFR53332.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 633

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 135/252 (53%), Gaps = 21/252 (8%)

Query: 534 PNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           P+ +  L  VN   +V+ E     RA  +K E   +++ +K++F+ ++S+E+R+PL  I+
Sbjct: 373 PDPRLELVEVNYDITVQKETEAELRAARDKAE---ESNRLKSAFLANISHEIRTPLNAIV 429

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLL T       ++Q ++ + I  ++ +LL L +DI+DL+ +DAG  +     + L 
Sbjct: 430 GFSDLLMTV---DDPAEQEEFRQTIQKNNVLLLQLFSDIIDLSKIDAGSFEYMPKPVYLY 486

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
                + Q +  ++ E  + +++  D  L + F AD   L Q+ +  +SNA+ F+ +G+ 
Sbjct: 487 QFCAMMLQKMKDRVPE-GVELRIDEDSPLDAWFNADSGYLNQVITNFVSNAIKFTHRGTI 545

Query: 708 VI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            I   + AAR    F   V++ G  I  +   +VF+RF+      Q  G GLGL + +S 
Sbjct: 546 TIGYQIDAARQLEMF---VEDTGIGISAENQTAVFDRFMKVDSFVQ--GTGLGLPLCKSI 600

Query: 765 INLHGGHVSISS 776
           I   GG + ++S
Sbjct: 601 IEKMGGRIGVTS 612


>gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2]
 gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2]
          Length = 648

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 129/246 (52%), Gaps = 10/246 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +++  ++V+++V  E+AL ++    ++A+  K++F+ ++S+E+R+PL  +IG  +L+   
Sbjct: 113 SIIQVIDVSNAVAREKALEKQVLERQRAEAAKSAFLANMSHEIRTPLNGVIGMLELVADE 172

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+ K  Q+++  S S+  LL ++NDILD + ++AG + ++     L     ++  S
Sbjct: 173 ---PLSDKLQQFLQIASNSAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDIIAS 229

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
                ++  I +   S     + V AD+QR+ QI   +LSNA+ F+ +G  V+     K 
Sbjct: 230 FIPAANKKAISLIFDSSHLETTLVRADKQRVRQILVNLLSNAIKFTEQGEVVVEVYLQKI 289

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                  +  V + G  I   +   +F  F  +     RR  G GLGL+I +   +L GG
Sbjct: 290 DSQTAQLVCKVLDTGIGIEAHVIAKLFEPFQQSDSSISRRFGGTGLGLAIAKQLCHLMGG 349

Query: 771 HVSISS 776
            +++SS
Sbjct: 350 ELTLSS 355


>gi|323185298|gb|EFZ70662.1| TMAO reductase sytem sensor TorS [Escherichia coli 1357]
          Length = 904

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|320200221|gb|EFW74809.1| Sensor protein torS [Escherichia coli EC4100B]
          Length = 904

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|311894939|dbj|BAJ27347.1| putative two-component system sensor kinase [Kitasatospora setae
           KM-6054]
          Length = 362

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 23/247 (9%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASS 617
            EA R+ +      +  V++ELRSPLT++ GFT  L  +K    N  Q +  +E + A +
Sbjct: 117 TEARRRTERSHAELIATVAHELRSPLTSVKGFTATL-LAKWERFNDGQKRVMLETVYADA 175

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDG 675
             ++ L+ ++LD++ +DAG +++    +   DL   V++ +A K+       R  +  DG
Sbjct: 176 DRVVRLIAELLDISRIDAGRLEIRRQRV---DLAAAVRRHVAGKVAAGIPAERFDIRVDG 232

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------------NGDFIFSV 723
                  D  +L Q+ + +L NA+       T+ +  A++             G  + +V
Sbjct: 233 PPAEQWGDPDKLDQVLANLLENAVRHGEGTVTIEVGPAKELVEVPGTPPRVVEGTAV-TV 291

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G+ IPE+    VF RF   + RG   G GLGL IV+  +  HGG + IS +D G   
Sbjct: 292 SDQGAGIPEEAMPRVFTRFWRGSRRG---GTGLGLYIVKGIVEAHGGVIRISRADGGGAR 348

Query: 784 INCRIPS 790
               +P 
Sbjct: 349 FRFVLPG 355


>gi|257866230|ref|ZP_05645883.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257873256|ref|ZP_05652909.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257875865|ref|ZP_05655518.1| histidine kinase [Enterococcus casseliflavus EC20]
 gi|257800188|gb|EEV29216.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257807420|gb|EEV36242.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257810031|gb|EEV38851.1| histidine kinase [Enterococcus casseliflavus EC20]
          Length = 402

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 115/219 (52%), Gaps = 3/219 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S   +  +Y       +  + +
Sbjct: 163 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDRQYHS-EEELLKYTHTAYVKAKQMKS 221

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+ +   V    + +N     +  L+ ++      +     I+I+  +  +      
Sbjct: 222 LVDDLFEYTKVRQPSVPINVMEFDMAQLVEQLAADFELEASRKGIKIETYTRPEHIEMDG 281

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L+++F+ +LSNA+ +      + ++  +   + I +VKNNG  IP+    S+F+RF
Sbjct: 282 DTEKLVRVFNNLLSNALKYGKGADKIRMEVEKVGTEAILTVKNNGQMIPKQALDSLFDRF 341

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             V  +   +  G GLGL+I +S + LHGG++   S+ E
Sbjct: 342 YRVEESRSQETGGTGLGLAIAQSIVALHGGYIYAKSTPE 380


>gi|240278708|gb|EER42214.1| sensor histidine kinase/response regulator [Ajellomyces capsulatus
            H143]
          Length = 2390

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 32/259 (12%)

Query: 552  ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL+   EA RK                 A + K+ F+ +VS++LR+P+  +IG ++LL
Sbjct: 1845 KRALSLAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELL 1904

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   +L+ +Q  YVE I   +  LL L+NDILD + ++AG MK++   + L + + EV
Sbjct: 1905 KKT---NLDREQDGYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEV 1961

Query: 655  KQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             +++     +  ++     DG   +   + D  RL QIF  +LSN+  F+ KGS  +   
Sbjct: 1962 VRALRYTHRDRGLQTIEDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAK 2021

Query: 713  ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
            A D  D        V + G  I  +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 2022 AADEDDGRIRITCKVADTGIGISGEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2080

Query: 766  -NLHGGHVSISSSDEGVTT 783
             ++ GG + +  S+EGV T
Sbjct: 2081 EDVLGGKIWL-QSEEGVGT 2098


>gi|159127382|gb|EDP52497.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus A1163]
          Length = 2333

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 16/231 (6%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A   K+ F+ ++S++LR+P+  +IG ++LLK +    L+ +Q +YVE I   +  LL L+
Sbjct: 1884 AARAKSIFLANISHDLRTPMNGVIGLSELLKGT---ILSKEQDEYVESIRVCADTLLTLI 1940

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FV 681
            NDILD + ++AG MK++   + + + ++EV +++    H +   + +    K+      +
Sbjct: 1941 NDILDFSKLEAGKMKISTVPLNVKETISEVVRAL-RYTHRDRGLVTIEDLDKVPPDLVVL 1999

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKS 737
             D  RL QIF  +LSN+  F+ KGS TV  K +R+  + +    +V + G  IPE+    
Sbjct: 2000 GDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSR 2059

Query: 738  VFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
            +F  F S A     R   G GLGLSI ++ I ++ GG + + S+    TT+
Sbjct: 2060 LFKPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTV 2109


>gi|146302301|ref|YP_001196892.1| integral membrane sensor hybrid histidine kinase [Flavobacterium
           johnsoniae UW101]
 gi|146156719|gb|ABQ07573.1| integral membrane sensor hybrid histidine kinase [Flavobacterium
           johnsoniae UW101]
          Length = 729

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 11/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYI 613
           L E  E   +A  +K  F+  +S+ELR+PL  ++G T+ LL+  K  S    QSQ++  +
Sbjct: 344 LLEAKEIAEEASLLKTQFISTISHELRTPLYGVVGITNMLLEEHKELS----QSQHLSAL 399

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+LVNDIL +  ++   + L   T  ++D +  +K S++    +NN +I V  
Sbjct: 400 KFSARYLLSLVNDILQINKIEENKVVLESLTFNISDEITMIKNSLSFLSQKNNNKINVEI 459

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGS 728
           D  +  + + D+ RL QI   ++SNA+ F+  G   +I+K  +  G      F +++NG 
Sbjct: 460 DDYIPEYLIGDKLRLGQILMNLVSNALKFTKNGEVDIIVKLHKIEGKLYYLDFLIRDNGV 519

Query: 729 SIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I       +F +FV    + +  +G GLGLSIV+  + L G  +++ S     T  +  
Sbjct: 520 GIAAVDQNKIFEKFVQVGRKDEDYQGTGLGLSIVKRLLGLFGSTITLESDLGAGTAFSFV 579

Query: 788 IP 789
           IP
Sbjct: 580 IP 581


>gi|325496973|gb|EGC94832.1| hybrid sensory histidine kinase TorS [Escherichia fergusonii
           ECD227]
          Length = 912

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        L+    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLMESTLQLMSGRVKGRPIRLATAIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IILRSRTDGEQWLLEVEDSGCGIDPAKLTEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|317499096|ref|ZP_07957375.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893616|gb|EFV15819.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 762

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 139/272 (51%), Gaps = 13/272 (4%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++G + +L  S  E   I   N  T L  +N T+  +A+RA  +  E    A + K+ F+
Sbjct: 317 IKGIVTVLRKSQSEAIEIEREN-NTRLETIN-TELTQAKRAAEQAFEVSNNASQSKSDFL 374

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  I+G T L++         K  +YV+ I  S+  LL ++ND+LD++ +
Sbjct: 375 ASMSHDIRTPMNAIMGITSLIRHD--AGNKDKVIEYVDKIDVSAQHLLGIINDVLDMSKI 432

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           +AG    +YS   + + + E++     +  E +  + +  +  +  +V +D   L+QIFS
Sbjct: 433 EAGKTVFSYSDFSILEFMQEIQTMFCPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFS 492

Query: 693 KILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--S 744
            +LSNA+ ++ KG  +          +     + F+V +NG  + ED    +F+ F    
Sbjct: 493 NLLSNAVKYTQKGGKIQFLVEECETKSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREE 552

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++   + +G GLG++I ++ I   GG + + S
Sbjct: 553 SSLTNKIQGTGLGMAITKNLIEAMGGTIDVDS 584


>gi|260867202|ref|YP_003233604.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O111:H- str. 11128]
 gi|257763558|dbj|BAI35053.1| hybrid sensory histidine kinase TolS in two-component regulatory
           system with TorR [Escherichia coli O111:H- str. 11128]
          Length = 914

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|254786633|ref|YP_003074062.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237684702|gb|ACR11966.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 691

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T ++VT+   AE  + +  E   +A+  K+ F+  +S+ELR+PL +I+GF  L    K  
Sbjct: 280 TNMDVTEIKLAEERVLKAKEVAEEANRAKSDFLSSMSHELRTPLNSILGFAQLCDADK-- 337

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  +Q   +  I  +   LL LV D+LDLA +++  M  +   +    LL E   S+ +
Sbjct: 338 SLLPEQRANIAEIRRAGEHLLQLVGDVLDLAKIESRRMGFSLEPVTPARLLAEAVSSLQS 397

Query: 661 K--MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           +  M   ++ ++   D      VAD  RL Q+F  +LSNA+ ++  G +V +  AR    
Sbjct: 398 QAEMRGISVTLEPACDESDVDVVADAVRLKQVFLNLLSNAIKYNVDGGSVHVGCARLEEA 457

Query: 719 FI-FSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           F+  +VK++G  I E + K +   FNR  + A   +  G G+GL I +  +   GG +  
Sbjct: 458 FLRVTVKDSGRGIAEHLQKQMYQPFNRLGNEASSIE--GSGVGLVITKQLVEQMGGLIGF 515

Query: 775 SSSD 778
           SS +
Sbjct: 516 SSKE 519


>gi|192360747|ref|YP_001981263.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686912|gb|ACE84590.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 758

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 12/224 (5%)

Query: 561 ALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISAS 616
           A RKA+   + K+ F+  +S+ELR+PL  IIG+T+L ++  KL S + +  + +E +  +
Sbjct: 391 AKRKAEDASQAKSEFLSLMSHELRTPLQAIIGYTELVIEELKLDS-DDRHVKDLERVIHN 449

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDG 675
              LL L+N +LD+A +++G M L+ + + L+ L++E + ++A  + ++ I+ ++ + DG
Sbjct: 450 GERLLRLINGVLDMAKIESGSMDLDLTEVRLSSLVDEARGTVAPLLEKSEIQVVQEVDDG 509

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +     AD ++LL I   +L NA  F+ KG  V +KA         SV + G  +  +  
Sbjct: 510 E-SLPKADPEKLLHILINLLGNASKFAPKG-VVSIKAYHRAEKIYISVADTGIGMSPEQQ 567

Query: 736 KSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           + +F+ F   A  G  R   G GLGLSI      L GG + + S
Sbjct: 568 QHIFDPF-RQADSGTTRKYQGSGLGLSITRQLCELMGGSIRVES 610


>gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R E A  +  E  R+A      K+ F+ ++S+E+R+P+  +IG   LL +     L ++Q
Sbjct: 144 RLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSE---DLTAEQ 200

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV+ I  S   LL L+N ILD + ++AG ++L+Y      +L+ EV   +  +    N
Sbjct: 201 LSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQN 260

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF-- 719
           + +   IS G       D  RL Q+   ++ NA+ F+  G   I      A     +F  
Sbjct: 261 LALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEFSC 320

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F+VK++G  IP +    +F RF        R+  G GLGL+I    + L GG V + S
Sbjct: 321 YFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVES 379


>gi|153947037|ref|YP_001402279.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           IP 31758]
 gi|152958532|gb|ABS45993.1| signal transduction histidine-protein kinase BarA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 930

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|330465155|ref|YP_004402898.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
            maris AB-18-032]
 gi|328808126|gb|AEB42298.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
            maris AB-18-032]
          Length = 1457

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 16/255 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A   L EK + L +A   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ 
Sbjct: 1028 ARLGLEEKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLAENSERNLTPKQIEFA 1087

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  S + LL L++DILDL+ ++AG M +  + +   ++ + V+Q+ A +  E  +  +
Sbjct: 1088 RTIHGSGSDLLRLIDDILDLSKIEAGRMDVEPTEVRFEEIRSYVEQAFAPQAEEKGLDFQ 1147

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF--------- 719
            V ++     + V D QRL QI   +LSNA+ F+  G+ T+ +  A ++  F         
Sbjct: 1148 VRVAKDLPPAVVTDAQRLQQILRNLLSNAVKFTDNGAVTLRISRAPEHAVFDVPALINAR 1207

Query: 720  ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F+V + G  I +D    +F  F        RR  G GLGLSI      L GG +++
Sbjct: 1208 QVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTGLGLSISRDLARLIGGTITV 1267

Query: 775  SSSDEGVTTINCRIP 789
            SS+    +T    +P
Sbjct: 1268 SSAPNQGSTFTLYLP 1282


>gi|310795325|gb|EFQ30786.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1390

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 128/219 (58%), Gaps = 12/219 (5%)

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +K+ F+ ++S+E+R+P+T +IG  +LL+  +L   +++Q++YVE I  S+  LL ++NDI
Sbjct: 790  LKSQFLANMSHEIRTPITGVIGMAELLRDMEL---DAEQTEYVENIQRSANALLTVINDI 846

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADR 684
            LD + V++G + +      L+ ++ +V++ ++      N+  +    G++ +    + D 
Sbjct: 847  LDFSKVESGRLDIEEVQFSLSVIVTDVRKMLSFAAERKNLDFRSDISGEVENDLVVIGDP 906

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFN 740
             R+ QI + +L+N++ F+++G     ++  ++  D I   F V+++G  I E++ K +F 
Sbjct: 907  GRVRQIITNLLTNSIKFTNQGYVKFSVQKEKETSDSIVVKFIVEDSGIGIEEEVRKKLFQ 966

Query: 741  RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             F        R+  G GLGL+I ++ + L  G++++ S+
Sbjct: 967  PFSQGDASTARKFGGTGLGLTICKNLLELMNGNMTLEST 1005


>gi|300929237|ref|ZP_07144716.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1]
 gi|300462803|gb|EFK26296.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1]
          Length = 904

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|297520345|ref|ZP_06938731.1| hybrid sensory histidine kinase TorS [Escherichia coli OP50]
          Length = 619

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 386 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 442

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 443 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 502

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 503 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 561

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 562 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 608


>gi|295798149|emb|CAX68999.1| sensory transduction histidine kinase [uncultured bacterium]
          Length = 823

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 128/262 (48%), Gaps = 17/262 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++V++  + E  + ++++   +A++ K  F+ H+S+E+ SPL  I+GF++LL  +    L
Sbjct: 558 LDVSERKKIEERMEQEHKWAEEANKAKAKFLAHMSHEIVSPLNAIVGFSELLMKT---PL 614

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N  Q +Y+  I  +  +LL+++NDILD + +DA  +        L  L+      +  K 
Sbjct: 615 NDTQKEYLSIIRETEQLLLSIINDILDFSKIDAKQLTFEEIEFNLESLIENSLLVVKGKA 674

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720
            EN      I +     +  D  RL Q+   +LSNA+ F+++GS  I  +      F+  
Sbjct: 675 KENVSLAFKIDETIPKVYKGDPTRLKQVILNLLSNALKFTTQGSIEI--SVNTEKHFLED 732

Query: 721 --------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                    SVK+ G  IP +  K +F+ F+       R   G GLGLSI  + +   GG
Sbjct: 733 EQVFRVLQVSVKDTGIGIPLEKQKIIFDPFIQADGSVTRTYGGTGLGLSIARALVERMGG 792

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            + ++SS    +T    +  KE
Sbjct: 793 KIWVTSSPGKGSTFAFTVQLKE 814


>gi|119473025|ref|ZP_01614847.1| Signal transduction histidine kinase [Alteromonadales bacterium
           TW-7]
 gi|119444603|gb|EAW25915.1| Signal transduction histidine kinase [Alteromonadales bacterium
           TW-7]
          Length = 806

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 133/252 (52%), Gaps = 9/252 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+ V A R L +   A   A + K+ F+ ++S+E+R+P+  I+G   LLK +   SL 
Sbjct: 417 DVTEKVDAIRKLFDAKLAAENAAQSKSDFLANMSHEIRTPMNAILGGLQLLKNT---SLP 473

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    ++  S S   LL ++NDILD + +++  ++L  ++  L+++L+ +   + + + 
Sbjct: 474 EELRAVLKNASYSGQSLLTIINDILDYSKIESNQLQLEKASFSLSEVLDSITYDLDSLVS 533

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI 720
           E  I   V  D     + V D  R+ QI   + SNA+ F+ KGS  I  +++  +  + I
Sbjct: 534 EKRIGFTVNKDESYYEYWVGDLVRVKQILLNLSSNAVKFTDKGSVKINASSKIYEGKEAI 593

Query: 721 F-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +  V ++G  + +++ + +F RF        R+  G GLG+SI  S + + GG + I S 
Sbjct: 594 YLEVVDSGIGMSKEVTEHIFERFTQADSSTTRKYGGTGLGMSITISLVKMMGGEIDIQSK 653

Query: 778 DEGVTTINCRIP 789
               TT+  ++P
Sbjct: 654 QGLGTTVTIKLP 665


>gi|70999294|ref|XP_754366.1| sensor histidine kinase/response regulator [Aspergillus fumigatus
            Af293]
 gi|66852003|gb|EAL92328.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus Af293]
          Length = 2333

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 16/231 (6%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A   K+ F+ ++S++LR+P+  +IG ++LLK +    L+ +Q +YVE I   +  LL L+
Sbjct: 1884 AARAKSIFLANISHDLRTPMNGVIGLSELLKGT---ILSKEQDEYVESIRVCADTLLTLI 1940

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FV 681
            NDILD + ++AG MK++   + + + ++EV +++    H +   + +    K+      +
Sbjct: 1941 NDILDFSKLEAGKMKISTVPLNVKETISEVVRAL-RYTHRDRGLVTIEDLDKVPPDLVVL 1999

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKS 737
             D  RL QIF  +LSN+  F+ KGS TV  K +R+  + +    +V + G  IPE+    
Sbjct: 2000 GDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVSDTGIGIPEEQKSR 2059

Query: 738  VFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
            +F  F S A     R   G GLGLSI ++ I ++ GG + + S+    TT+
Sbjct: 2060 LFKPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTV 2109


>gi|284167284|ref|YP_003405562.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284016939|gb|ADB62889.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 883

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 15/253 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ML   +VT+    ER L E N+ L +       F    S++L+ PL  +  +  LL+   
Sbjct: 637 MLVIRDVTERREYERMLEESNDRLEQ-------FAYAASHDLQEPLRMVSSYLQLLERRY 689

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+    +++E+    +  +  +++ +L  + V+       + T+ L+D+L EV   +
Sbjct: 690 DDDLDEDGQEFLEFAVDGADRMREMIDGLLKYSRVET--RGDPFETVSLDDVLTEVCDDL 747

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
              + E+N  I       L     D  +L Q+F  +L NA+++S      I + A RD  
Sbjct: 748 QVMIQESNAEITTED---LPRVEGDHGQLRQVFQNLLDNAIEYSGDDPPRIYIDAERDGD 804

Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ SV++NG  I PED  + VF  F     RG+  G G+GL++VE  I  HGG V + S
Sbjct: 805 QWLVSVEDNGVGIDPEDTDR-VFEVFQRLHARGEHAGTGIGLALVERIIERHGGDVWVES 863

Query: 777 SDEGVTTINCRIP 789
                +T +  +P
Sbjct: 864 DPGQGSTFSFTLP 876


>gi|218441882|ref|YP_002380211.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174610|gb|ACK73343.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 955

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 9/260 (3%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERA-LTEKNEALRK----ADEIKNSFVQHVSYELRS 582
           +++  LP  Q +   +     +  ER  L  + +A R+    A+ IK+ F+  +S+ELRS
Sbjct: 535 FTLNGLPTVQAICRDITERKQIEQERENLLIQEQAAREVAESANRIKDEFLAVLSHELRS 594

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G+  LL T  L     +++  +  I  ++ +   L+ D+LD++ +  G + L  
Sbjct: 595 PLNPILGWAKLLNTHTLEPATHQKA--LSIIERNAQLQAELIEDLLDVSRILRGKLTLKI 652

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            ++ L  +++   ++I       NI+I+   D  +G  + D  RL QI   +LSNA+ F+
Sbjct: 653 VSVNLGFIIDSAIETIRLAAQAKNIQIQTKLDPNIGEVLGDPARLQQIVWNLLSNAVKFT 712

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             G  V ++           V + G  I  D    +F+ F        R   G+GLGL+I
Sbjct: 713 PTGGKVEIELNSLGNWAKIRVTDTGKGITSDFLPHIFDYFRQADSTTTRIFGGLGLGLAI 772

Query: 761 VESFINLHGGHVSISSSDEG 780
               + LHGG +   S  EG
Sbjct: 773 ARHLVELHGGTIKAESLGEG 792


>gi|39354|emb|CAA41252.1| bvgS product, put. sensor protein [Bordetella bronchiseptica]
          Length = 1238

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  IIG  +L        
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQ 752

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +QS  V Y SA S  LL L+ DILD+A ++AG   L      L  L     +     
Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGL 810

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  V+   AR +G+  
Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAA 870

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              FSV + G  I E   + +F  F     +A  G   G GLGLSI    + L GG + +
Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930

Query: 775 SSSDEGVTTINC 786
            S+    TT++ 
Sbjct: 931 RSAPGVGTTVSV 942


>gi|117925519|ref|YP_866136.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609275|gb|ABK44730.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1049

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+  +S+E+R+P+ +I+G TDLL      +L+++Q   ++ I+ +   L+ ++NDIL
Sbjct: 548 KSAFLAVMSHEIRTPMNSILGMTDLLMEH---ALDAEQRHALQAIARAGDALMIIINDIL 604

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           DL+ ++A  ++L      L++L+  +   +  +  E  +++ ++ + +L  +   D+ RL
Sbjct: 605 DLSKIEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLSPYRWCDQVRL 664

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
            QI   ++ NA+ F+ +GS + +K ++  G+ I FSV ++G  I     +++F  F    
Sbjct: 665 RQILVNLIGNAIKFTHQGS-IEVKLSKGPGNRIRFSVSDSGIGIDLQQQEAIFESFNQGD 723

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               RR  G GLGLSI +  + L GG + + S     +T    IP
Sbjct: 724 SSVTRRYGGTGLGLSISQRLVKLMGGVLKVYSRPGKGSTFFFTIP 768


>gi|194438003|ref|ZP_03070096.1| TMAO reductase system sensor TorS [Escherichia coli 101-1]
 gi|256023304|ref|ZP_05437169.1| hybrid sensory histidine kinase TorS [Escherichia sp. 4_1_40B]
 gi|301022622|ref|ZP_07186493.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1]
 gi|301646370|ref|ZP_07246255.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1]
 gi|307137626|ref|ZP_07496982.1| hybrid sensory histidine kinase TorS [Escherichia coli H736]
 gi|312971125|ref|ZP_07785304.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70]
 gi|194422939|gb|EDX38933.1| TMAO reductase system sensor TorS [Escherichia coli 101-1]
 gi|299881194|gb|EFI89405.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1]
 gi|301075406|gb|EFK90212.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1]
 gi|310336886|gb|EFQ02053.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70]
 gi|315135644|dbj|BAJ42803.1| hybrid sensory histidine kinase TorS [Escherichia coli DH1]
 gi|315619081|gb|EFU99662.1| TMAO reductase sytem sensor TorS [Escherichia coli 3431]
 gi|332342435|gb|AEE55769.1| TMAO reductase sytem sensor protein TorS [Escherichia coli UMNK88]
          Length = 904

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|323165485|gb|EFZ51272.1| TMAO reductase sytem sensor TorS [Shigella sonnei 53G]
          Length = 904

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|318607055|emb|CBY28553.1| bara sensory histidine kinase (= VarS = GacS) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 847

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + ++       
Sbjct: 342 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G  I E    
Sbjct: 402 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQA 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT--------INC 786
            +F  F        RR  G GLGL I E  +   GG +S  S  E  +T        +N 
Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRFHLTLDLNE 521

Query: 787 RIPSK 791
            IPS+
Sbjct: 522 AIPSR 526


>gi|300902839|ref|ZP_07120787.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1]
 gi|301302388|ref|ZP_07208519.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1]
 gi|300405106|gb|EFJ88644.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1]
 gi|300842227|gb|EFK69987.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1]
 gi|315258041|gb|EFU38009.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 85-1]
          Length = 904

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|270159374|ref|ZP_06188030.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae D-4968]
 gi|289165811|ref|YP_003455949.1| sensory histidine-kinase / response regulator [Legionella
           longbeachae NSW150]
 gi|269987713|gb|EEZ93968.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae D-4968]
 gi|288858984|emb|CBJ12910.1| putative sensory histidine-kinase / response regulator [Legionella
           longbeachae NSW150]
          Length = 762

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 136/256 (53%), Gaps = 10/256 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+  + E  L    E    A+  K  F++++ +++R+PLT I+GF+D++K     + 
Sbjct: 210 VDITERKKIEAELNIAKEKAETANRAKTEFLENMRHDIRTPLTGIVGFSDIIKEE---AQ 266

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +  +Y + + ASS  LL+ ++++L+   V +G +        L +LL  +      K 
Sbjct: 267 NPRIKEYADNLVASSHALLDFMDEVLEAIHVSSGEIPRVKKKFELQNLLQHLIDLNKAKA 326

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI 720
              ++ + +  D  +  + + D  R+ +I  ++L+N+++F+  G   +  + A+  G  +
Sbjct: 327 FSKHLELSLDFDKNIPKYLIGDNIRIHRIILELLTNSLNFTDSGFVKLTAQLAKQEGREV 386

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  IP+D  + +F +F  ++ +++G  +G GLGL++++ F++   G + + 
Sbjct: 387 ILKFIVEDTGIGIPQDKQQEIFLQFKKLTPSYKGIYKGAGLGLAVLKQFVDELDGEIYVK 446

Query: 776 SSDEGVTTINCRIPSK 791
           S+    T   C IP K
Sbjct: 447 STVSKGTIFTCIIPLK 462


>gi|253574564|ref|ZP_04851905.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846269|gb|EES74276.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 485

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 17/254 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L ++ E L +A   K+ F+  +S+ELR+PL +II   +++  S   S   + S+Y
Sbjct: 221 KAKIGLEDRAEQLAEASSHKSEFLATMSHELRTPLNSIINLAEMIAESDEAS--EEISEY 278

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND----LLNEVKQSIATKMHEN 665
              I  S   LL ++NDILDL+ V+AG +++    +VL +    +  + +Q  A K    
Sbjct: 279 GRIIHKSGEELLQIINDILDLSKVEAGRLEITNEEVVLAEIPVWMQLQFEQIAAQKKIAF 338

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD-----F 719
             R++   +    S ++D QR+ QI   +LSNA  F+ +G   + ++ A   G       
Sbjct: 339 TTRLE---ESLPDSIISDPQRIAQILRNLLSNAFKFTHEGHVELDIRRAPAKGTAEGEWL 395

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +F+V + G  + ED  ++VF  F        RR  G GLGLSI  +   L GG++ + S 
Sbjct: 396 VFTVSDTGIGVAEDKQRAVFEAFQQADGSISRRYGGTGLGLSISSNLARLLGGYLRMESK 455

Query: 778 DEGVTTINCRIPSK 791
           +   +T +  +P K
Sbjct: 456 EGQGSTFSFYLPLK 469


>gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 959

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 17/267 (6%)

Query: 541 TFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            F ++T   +AE       + L EKN+AL++ DE+K+ F+ + S+ELR+PL  +IG ++ 
Sbjct: 556 VFEDITQRRQAEIERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSES 615

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +     G L   Q Q +  I+ S   L  LVNDILD + +    ++L    + L +++  
Sbjct: 616 MLDGVAGPLTELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELQLQPLGLREIVEV 675

Query: 654 VKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           V   + +K    N  I++I++      +  AD  RL QI   ++ NA+ F+  G+  I  
Sbjct: 676 V--VVLSKPLIGNKDIELINEIPDDFPAVNADENRLQQILYNLIGNAIKFTDSGTVKITA 733

Query: 712 AARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           +  D    N   + ++ + G  I  +    +F  F        R+  G GLGL+I +  +
Sbjct: 734 SVLDTDANNSMAVINISDTGIGILPEKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLV 793

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            LH G + + S     +T +  +P  E
Sbjct: 794 ELHQGKIWLDSVVGSGSTFSFTLPISE 820


>gi|254389790|ref|ZP_05005014.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197703501|gb|EDY49313.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 478

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 6/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           + + V  V++ELR+PL+NI G+   L+ ++ G +    + +V+ +   +  L ++++D+ 
Sbjct: 240 RRAMVSDVAHELRTPLSNIRGW---LEGAQDG-VAEPDAAFVDSLLEEAVQLQHIIDDLR 295

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA  DAG ++L    +   +LL +V  +   +  E    ++V     +    AD  RL 
Sbjct: 296 DLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSADPVRLR 355

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q    +LSNA+  + +G +V L+AA         V + G  I  +    VF+RF      
Sbjct: 356 QAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRFWRAEKS 415

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776
             RR  G GLGL+IV      HGG V++ S
Sbjct: 416 RSRRTGGSGLGLAIVRKLTEAHGGAVTVES 445


>gi|1122856|emb|CAA63920.1| TorS [Escherichia coli K-12]
          Length = 904

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|46579095|ref|YP_009903.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46448508|gb|AAS95162.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232939|gb|ADP85793.1| histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 667

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 133/261 (50%), Gaps = 26/261 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA R + E  +A   A   K SF+  +S+E+R+ L  I+G T+L+  +    L+ +Q + 
Sbjct: 123 RAVREIDEARQAAEHASLAKTSFLAGMSHEIRNTLNGIVGMTELVLDTP---LSGEQRES 179

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  + ASS  LL L++D+LD + ++A  ++L      L+ LL +V Q+  ++    NI +
Sbjct: 180 LNTVLASSETLLTLLHDVLDFSRLEARQLRLVERPFSLDRLLKQVVQASRSEAERKNISL 239

Query: 670 --KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDN 716
             +V  D        D  RL Q+ + ++ NA+ F+ KGS +I           L++   +
Sbjct: 240 DFRVTPDVP-DRLTGDATRLTQVLANLVGNAVKFTHKGSVIIEVSAIPQDQTLLESLFPD 298

Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           G       +FS+++ G  I ++  +++F  F   A    +R  G GLGL+I  + + + G
Sbjct: 299 GPPSSLTLLFSIRDTGIGIADEHLRTIFEAFSQGAEETVQRYGGTGLGLAICRNLVEIMG 358

Query: 770 GHV-SISSSDEGVT-TINCRI 788
           G + + SS  +G +    CR+
Sbjct: 359 GSIWARSSEGQGSSFHFTCRL 379


>gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
 gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
          Length = 377

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 137/278 (49%), Gaps = 21/278 (7%)

Query: 528 YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKN-------EALRKADEIKNSFVQH 575
           Y I PL  A     + ++   ++T+  R E  L +           L++ D IK+ FV  
Sbjct: 95  YRIHPLKEAGGYVSKAVIFIEDITEMTRLEEELRDSYIKLENAYAELKELDSIKSEFVSM 154

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PLT I  + ++ +   LG L   Q + ++ I + +  ++ LVND+LD+  + +
Sbjct: 155 VSHELRTPLTVINSYIEMFEDGMLGDLTDVQKEKLQLIRSQTDTMIQLVNDMLDILRIGS 214

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
             ++L      + +L+  V  S++    + E+ I  +      L     D ++++Q+ S 
Sbjct: 215 RRLRLKKELSSMEELIRSVIASLSRLAALKEHTITFRCERANTL--IECDPKKIMQVLSN 272

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRR 752
           +L+NA+ ++     + +    D  + + S+++NG  I E+    +F + FV +  +    
Sbjct: 273 LLTNAIKYTPDRGQIEVVLGGDAENVLVSIRDNGIGIREEDKDRIFEKFFVMSNEKSADI 332

Query: 753 GVGLGLSIVESFINLHGGHVSISSS-DEGVT---TINC 786
           G+GLGLSI +  +  HGG +   S   EG T   T+ C
Sbjct: 333 GMGLGLSITKDIVEAHGGRIWFESRFGEGSTFYFTLPC 370


>gi|332639011|ref|ZP_08417874.1| Signal transduction histidine kinase [Weissella cibaria KACC 11862]
          Length = 373

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 124/244 (50%), Gaps = 10/244 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQY 609
           A+ A+ E+ E  R  DE+    + +VS++LR+PLT+I+G+  L+   +   L  K   +Y
Sbjct: 126 AQAAMAEEREIERSKDEM----ITNVSHDLRTPLTSILGYLGLIINDEDEKLARKDLVKY 181

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
                + +  + +LV D+ D   V     KL ++ + L  +L ++  +   +    ++ +
Sbjct: 182 ANTAFSKAGQMKSLVEDLFDYTQVHQVDFKLRWAPLDLAAMLQQLAVNYELEAKNKHVVV 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK--NNG 727
             +++      V D  RL ++F  +++NA+ +    + V L A  +  +    V+  NNG
Sbjct: 242 SAVTNPDTIEMVGDPDRLARVFMNLINNALKYGDGATFVRLTAKTNKSENYVEVRVQNNG 301

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP D  K +F+RF  V ++   +  G GLGL+IV   +  HGG V + S D+ +T+  
Sbjct: 302 EKIPADSIKRLFDRFYRVESSRNTKTGGTGLGLAIVNGVVEAHGGTVRVESDDD-LTSFI 360

Query: 786 CRIP 789
            ++P
Sbjct: 361 VQLP 364


>gi|326940960|gb|AEA16856.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 458

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+         + I S+ +NG  + ++    +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESNVIISISDNGIGMEQEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G V + S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTVRVELP 457


>gi|330843130|ref|XP_003293515.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum]
 gi|325076143|gb|EGC29955.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum]
          Length = 1374

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 138/268 (51%), Gaps = 15/268 (5%)

Query: 521 LSDSVLEY--SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF--VQHV 576
           L+++V+ +  SI P+ +    + + + T     ++ + E+++ L +   I+ S   +  +
Sbjct: 592 LNNTVIYFDTSISPVLDQFQQILYYHCTKRDVTQKKIDEESKTLEQNKIIEKSRLRISMM 651

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+++R+P++NIIG  DLL  + L +    Q  Y+  I  SS  LLN++NDILD++ ++AG
Sbjct: 652 SHDIRTPMSNIIGMADLLYDTPLSN---HQLHYLNIIKNSSNTLLNIINDILDMSKIEAG 708

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695
            +++ Y     N  ++EV +S+A ++    + +    D K+  + V    RL QI + +L
Sbjct: 709 KLEIEYERFDFNSTVSEVVESMAQRVQAKGLELLSYIDPKIPQTLVGPSSRLNQILTNLL 768

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            N++ F+ KG   I     D  D  +     VK+ G  I ++    +F  F        R
Sbjct: 769 GNSLKFTDKGEISIFCLLTDETDSEYVIRVEVKDTGIGIKKEALPLLFKAFTQAEGTITR 828

Query: 752 R--GVGLGLSIVESFINL-HGGHVSISS 776
           +  G GLGL+I +  + L   G +S+ S
Sbjct: 829 QYGGSGLGLAICKELVQLAFNGSISVES 856


>gi|309795016|ref|ZP_07689436.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7]
 gi|308121320|gb|EFO58582.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7]
          Length = 904

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|304312091|ref|YP_003811689.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
 gi|301797824|emb|CBL46046.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
          Length = 840

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 31/257 (12%)

Query: 552 ERALTEKNEALRKADE----------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +R   E + AL KA++           K++F+  +S+E+R+P+  +IG ++LL  ++L  
Sbjct: 415 QRTQFEAHAALEKAEQETRIARHNMRAKSNFLAMMSHEIRTPMNGVIGISELLSHTQL-- 472

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +S Q +YV  I  S   LL LVNDILD + ++A  + L      L ++L E    +  K
Sbjct: 473 -DSAQQRYVSTIRNSGEALLRLVNDILDFSKLEARKLTLEDIPFHLPEMLQECVDILTPK 531

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----- 715
           +  + + +++    KL   V  D  RL QI   +  NA+ F+ KG   I  + +D     
Sbjct: 532 IQGSAVDLRLQISNKLPKMVNGDPTRLRQIILNLGGNALKFTRKGHVTIAVSFQDENFQP 591

Query: 716 ---NGDFI--FSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFIN 766
              N D +  F+V + G  + E+  + +F  F    +S A   Q  G GLGL I +    
Sbjct: 592 HQSNDDLLLRFTVSDTGIGLTEEQIQRLFQPFQQAEISTAR--QFGGTGLGLVICKDLAE 649

Query: 767 LHGGHVSISS-SDEGVT 782
           L GG + + S S EG T
Sbjct: 650 LMGGSIGVHSISGEGAT 666


>gi|298248593|ref|ZP_06972398.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551252|gb|EFH85118.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 983

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 5/235 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+EL++PLT +   T L++       + + +  +  +     
Sbjct: 749 NSAPKELEQRKDDFISMASHELKTPLTTLKMQTQLVRKRLERQAHHEAATALSKVEGPVK 808

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  LV ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      
Sbjct: 809 QLERLVGELLDVSKIQAGRLEYIRETVNLDALLHEVADTMQQISTTHTI---VVRGATSC 865

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           + V D+ RL QIF+ +LSNA+ +S    TV +            V+++G  IP +    +
Sbjct: 866 TLVGDKDRLGQIFTNLLSNAIKYSPGAETVEMDLEASEDAVTIRVQDHGLGIPREQRDKI 925

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF   A   QR   G+G+GL IV   +  HGG +++ S+    +T    +P +
Sbjct: 926 FERFYRVAGPRQRAIPGLGMGLYIVAEIVMGHGGTITVDSAVGKGSTFMVTLPKR 980


>gi|296283542|ref|ZP_06861540.1| multi-sensor hybrid histidine kinase [Citromicrobium bathyomarinum
            JL354]
          Length = 1446

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 12/223 (5%)

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            ++S+E+R+P+  ++GFT+LL     G L+ +Q +  + I+ S   ++ ++NDILD++ +D
Sbjct: 945  NMSHEIRTPMNGVVGFTELLLA---GELSPEQRENAQLIADSGRAMMQILNDILDVSKID 1001

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
            AG M +    I L   L    + +     +  ++ +++ D  + S V AD  RL QI + 
Sbjct: 1002 AGQMTIVREPIDLRHKLQSCMRLLEPTARQKGLKFELLIDEDVPSRVMADPLRLRQILTN 1061

Query: 694  ILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            ++ NA+ F++KG       I +   D      +V+++G  IP D   ++F  F S A   
Sbjct: 1062 LVGNAIKFTAKGIVNCRVSIERGPEDQETLCIAVEDSGIGIPADRLDAIFREF-SQADES 1120

Query: 750  QRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              R   G GLGL+I      +  G + +SS     +    R+P
Sbjct: 1121 TARIYGGTGLGLTISNELAKMMDGELLVSSELGHGSVFTLRLP 1163


>gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 604

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 10/231 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K D  +  FV +VS+ELR+PLT +  + + L     G+   ++   +++E     +  ++
Sbjct: 372 KIDRDRREFVANVSHELRTPLTTMRSYLEALAD---GAWRDEEIAPRFIEVTQNETERMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+L L+ +D+   KL  + +      ++V         EN   ++   D K+  ++
Sbjct: 429 RLVNDLLQLSKLDSKDYKLKKTRVHFIPYFHKVIDRFELTKKENVSFVRDFPDEKIIVYM 488

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
            D  ++ Q+F  I+SNA+ +S +G T+  +  +  GD+I  SVK+ G  IP+     +F 
Sbjct: 489 -DEDKITQVFDNIISNALKYSPQGGTITFRVKK-KGDYIEVSVKDEGVGIPKSDLSKIFE 546

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A   +  G GLGL+I +  +  HGG +   S +   TTI   +P
Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVVAHGGRIWAESQERKGTTIYFTLP 597


>gi|170765897|ref|ZP_02900708.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
 gi|170125043|gb|EDS93974.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
          Length = 778

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G+ + F V+++G
Sbjct: 381 VLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGEMLHFDVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|170020606|ref|YP_001725560.1| hybrid sensory histidine kinase TorS [Escherichia coli ATCC 8739]
 gi|169755534|gb|ACA78233.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
          Length = 904

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|187919994|ref|YP_001889025.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187718432|gb|ACD19655.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 776

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 129/266 (48%), Gaps = 9/266 (3%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           S  V E  I PL NA+  +        ++T    AE+ LT  N  L KAD  K+ F+  +
Sbjct: 363 SRGVCETVIKPLANARGDIYGAVSINRDITGRRHAEQQLTRLNLELSKADRRKDEFLATL 422

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           ++ELR+PL  +    ++L+  +    + + S   +        + +LV+D+L+++ +  G
Sbjct: 423 AHELRNPLAPMRNVLEILRLKEFA--DPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQG 480

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L    + L   +    ++    +  ++  + V    +    VAD  RL Q+   +L+
Sbjct: 481 KLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLVADPTRLSQMILNLLN 540

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           NA  ++  G T+ L A RD  + +  V+++G  IP +   SVF  F  ++ A    + G+
Sbjct: 541 NAAKYTPPGGTISLAAERDGDEAVIVVRDSGIGIPAEHLNSVFEMFSQLAPALDRSQGGL 600

Query: 755 GLGLSIVESFINLHGGHVSISSSDEG 780
           G+GL++V     LHGG V+  S   G
Sbjct: 601 GIGLALVRGLAELHGGTVAAFSDGPG 626


>gi|312116060|ref|YP_004013656.1| ATP-binding region ATPase domain protein [Rhodomicrobium vannielii
            ATCC 17100]
 gi|311221189|gb|ADP72557.1| ATP-binding region ATPase domain protein [Rhodomicrobium vannielii
            ATCC 17100]
          Length = 1168

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 162/377 (42%), Gaps = 39/377 (10%)

Query: 439  TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             +DH+ +G+AVF  + ++   N  FR +    +     G  +  I     RY  +    +
Sbjct: 655  ALDHVRQGIAVFDKNMQLICWNRQFREILILPQQFGRVGAPLDEIL----RYMAQRVHQN 710

Query: 499  LFAA--IITSFDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFVNVTDSVRA 551
              AA  ++T   D     Q T+E   +  +E  ++      +P    ++T+ ++T+   A
Sbjct: 711  PTAAEELVT---DRIAKYQLTMESFHERSIEGRVLQVRTNAMPQGGIVVTYTDITERETA 767

Query: 552  ERALTEKNEALR---------------KADEI---KNSFVQHVSYELRSPLTNI-IGFTD 592
              AL   NE L                KADE    K  F+   S+++  PL    +    
Sbjct: 768  AEALARANETLERRVEARTQELAIAKAKADEANLSKTRFLAAASHDVLQPLNAARLYAAS 827

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L++ S    L     +    I AS   +  ++N +LD++ +D+G MK  ++   + DLL 
Sbjct: 828  LIERSPPAELG----RLARNIDASLDGVEEILNALLDISRLDSGAMKPEFTVFPIKDLLE 883

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +++           I  K++  G L    +DR+ L +I   ++SNA+ ++ +    +L  
Sbjct: 884  QIRIDFEPIAKARGISFKILDSGAL--VRSDRKLLRRILQNLISNALKYNREKGRAVLGC 941

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             R   D +  V ++G  IPE     +F  F    H     G+GLGLSIVE    + G  +
Sbjct: 942  RRHGRDLVIEVHDSGPGIPEHQRDLIFKEFQRLDHHIHAPGLGLGLSIVERMCRVLGHEL 1001

Query: 773  SISSSDEGVTTINCRIP 789
            ++ S  E  +T    +P
Sbjct: 1002 ALRSKLEHGSTFTVNVP 1018


>gi|328885443|emb|CCA58682.1| Two-component hybrid sensor and regulator [Streptomyces venezuelae
            ATCC 10712]
          Length = 1785

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 24/263 (9%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ 
Sbjct: 1299 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAETNLTPKQVEFA 1358

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1359 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1418

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD------------ 715
            V +S     +   D QRLLQ+   +LSNA+ F+  G+   VI  A  D            
Sbjct: 1419 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPQSIREQLLEA 1478

Query: 716  ------NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                    D I FSV + G  I     + +F  F        R+  G GLGLSI      
Sbjct: 1479 GSLRDPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAR 1538

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG +  +S     +T    +P
Sbjct: 1539 LLGGEIFAASEPGRGSTFTLYLP 1561


>gi|296534470|ref|ZP_06896898.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
 gi|296265204|gb|EFH11401.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
          Length = 467

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+E K+ F+  +S+ELR+PL  ++G   LL   +   +     + +  I  +   LL L
Sbjct: 231 QANEAKSRFLARMSHELRTPLNGVLGLAQLLAARQ--DVPPAVREQLAMIEGAGRHLLAL 288

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           VND+LDLA V+AG + L  + + L  LL E    +  +     + + + +   L   V  
Sbjct: 289 VNDVLDLAQVEAGRLGLQCAPLALQPLLQEALALVRPEAERKRLALALEAAPGLPPAVHG 348

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV--- 738
           D +R+ QI   +L NA+ F+  G  V L A+   G  +   V +NG  IP      +   
Sbjct: 349 DARRIRQILLNLLGNAVKFTPAGGRVTLAASPLPGQGLRLEVVDNGPGIPPGQAARLFRD 408

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           F R    A R    G GLGL+I         G + + +  +G
Sbjct: 409 FQRLEGGAER--EEGSGLGLAICAGLALAMQGRIGVEAGPDG 448


>gi|262383276|ref|ZP_06076412.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294174|gb|EEY82106.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 666

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 134/229 (58%), Gaps = 5/229 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V+  + L    E  +++D++K++F+ ++S+E+R+PL  I+GF++L+ T  +    +++  
Sbjct: 420 VKQNKELEVALEKAKESDQMKSAFLANMSHEIRTPLNAIVGFSNLMNTD-IELSKAEREN 478

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I+ +S +LLNL+NDILDL+ +++G M  ++    LN+L++ + Q+    M E N+ 
Sbjct: 479 FTELINTNSDLLLNLINDILDLSRIESGRMSFSFQQYSLNELISTIYQTFQVLMPE-NVE 537

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           +++    K  S   D+ RL Q+ +  LSNA+ F+ KG  +I    R+ G  +   V++ G
Sbjct: 538 LRMQIPEKSISIPTDKFRLTQVITNFLSNAIKFTQKGYILIGYEYREEGRHVHIFVEDTG 597

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP++   +VFNRF         +G GLGLSI +       G++++ S
Sbjct: 598 IGIPKEKQDAVFNRFTKLDEFA--KGTGLGLSICKVIAERFDGYIAVES 644


>gi|257458984|ref|ZP_05624103.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
 gi|257443369|gb|EEV18493.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
          Length = 1517

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 18/229 (7%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A   A++ K+ F+ ++S+E+R+PL  IIGFT+LLK +    L+ ++  YV+ I  SS  L
Sbjct: 400 AAEDANKAKSIFLANMSHEIRTPLNGIIGFTELLKNT---DLDEEKRDYVDTIEKSSENL 456

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLN---DLLNEVKQSIATKMHENNIRIKVISDGKL 677
           L ++N+ILD++ +++   K+    I+ N   D  + V+  +A K  E NI I +  D  L
Sbjct: 457 LTIINNILDVSKIESN--KVELEDILFNPIQDFESAVEIYVA-KAAEKNIDILLYIDPTL 513

Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFI--FSVKNNGSSI 730
                 D  ++ ++   ++SNA+ F+ +  T++++  R+     G+ I  FSV++ G  I
Sbjct: 514 VHHLYGDITKIKEVLINLMSNAVKFTPEHGTIVVEILREPSKAPGEAIVTFSVEDTGIGI 573

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            ED   +VFN F        R+  G GLGL+I   ++ + GG + + S+
Sbjct: 574 SEDKLANVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLQVKST 622


>gi|160933151|ref|ZP_02080540.1| hypothetical protein CLOLEP_01994 [Clostridium leptum DSM 753]
 gi|156868225|gb|EDO61597.1| hypothetical protein CLOLEP_01994 [Clostridium leptum DSM 753]
          Length = 898

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 135/269 (50%), Gaps = 7/269 (2%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR---KADEI 568
           + LQG + ++      Y +  +     M++ +N    +   R   E+ +A+    + + +
Sbjct: 609 RGLQGVMGVVGIPSKYYPVPEVFEKNLMVSILNECGLILERRRFREEKQAIELETQQERL 668

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +++ ++ +S++LR+PLT+I G   +L    +     K+ +    I   S  L+NL  ++L
Sbjct: 669 RSNLLRAISHDLRTPLTSISGNAGVLMEKSIVLDEEKKQELYRSIYDDSMWLVNLTENLL 728

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            +  ++ G M L     +++D+  E    +  +  +++I +++  D  L     D + ++
Sbjct: 729 SITRIENGTMHLQMGAELMDDVFQEALAHVDRQAKDHHISVELPDDLLLAKM--DVRLIV 786

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   I++NA+ ++  GS +IL+A +       S+ ++G  I ++    +F+ F   S  
Sbjct: 787 QVIINIVNNAIKYTPAGSHIILRAEKQGAKVAVSISDDGPGISDEAKIHLFDMFYTASQG 846

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               RRG+GLGL++  S +  HGG ++++
Sbjct: 847 KPDNRRGLGLGLNLCRSIVTAHGGEITVT 875


>gi|197336014|ref|YP_002155471.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11]
 gi|121308572|dbj|BAF43671.1| bioluminescence regulatory protein [Vibrio fischeri]
 gi|197317504|gb|ACH66951.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11]
          Length = 744

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 129/249 (51%), Gaps = 16/249 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           DS +A+RA         K  ++K+ F+  +S+E+R+PL  I+G + LLK+S   +LN +Q
Sbjct: 354 DSYKAQRAA-------EKLAQVKSDFLARMSHEIRTPLNGILGISSLLKSS---NLNREQ 403

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  +      LL ++NDILD + ++   +K+N +   L+D+L  +           N
Sbjct: 404 QKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINSAPFKLSDVLENINAIYFPICKNKN 463

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--FS 722
           +   + +      F+ +D+ RL QI   +LSNA+ F+ KG   + L   + N D+   FS
Sbjct: 464 VFFSIENHVNPDVFINSDQVRLTQILFNLLSNAVKFTEKGKVKLTLSLNKHNSDYYLQFS 523

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +    +F  F  +     R+  G GLGL+IV+  ++L  G ++I+S+   
Sbjct: 524 VDDTGVGICAEEQARMFEPFEQSGFSESRKFGGSGLGLAIVKQLLDLLKGKITINSTIGV 583

Query: 781 VTTINCRIP 789
            +T +  IP
Sbjct: 584 GSTFSVLIP 592


>gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
 gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC
           12472]
          Length = 738

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 12/231 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
           + E  +   +A   K+ F+ ++S+E+R+P+  IIG + L L+T     L+ +Q  Y+  I
Sbjct: 1   MREAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTD----LDDQQRNYIGKI 56

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             + T LL ++NDILD + V+AG ++L      L+D+L+ V   +A K  +  + +   +
Sbjct: 57  HNAGTSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFET 116

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGS 728
            G +    V D  RL Q+ + +  NA+ F+  G  ++I+      GD +   F V + G 
Sbjct: 117 AGDVPQGLVGDALRLGQVLTNLAGNAIKFTETGQVSIIIGQVERIGDKVQLKFCVHDTGI 176

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            + E+    +F  F        RR  G GLGL+I +  + L GG + + S+
Sbjct: 177 GMSEEQQSRLFQAFSQADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESA 227


>gi|311695306|gb|ADP98179.1| sensory box sensor histidine kinase/response regulator [marine
           bacterium HP15]
          Length = 783

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 14/235 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E++EA+R A+  KN F+ +VS+ELR PL +++G+ +LL  +    L+ +Q +YV  + ++
Sbjct: 246 ERDEAVR-ANHAKNQFLANVSHELRIPLQSVLGYANLLTDT---PLDQEQREYVLTLLSA 301

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L  ++ND+LD+++++AG + L      L + LN++   + ++  E  + +++  D  
Sbjct: 302 SESLSAIINDLLDISSMEAGKLVLEDIPFDLRETLNDLVHMLGSRAREKGLALELRIDEN 361

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI- 730
           L  +   D  R+ QI   + SNA+ F+  G  +I    L    D      +V++ G  I 
Sbjct: 362 LPWALKGDPVRIRQILLNLTSNAIKFTDSGHVLISIEVLGRRDDKARLRIAVEDTGVGIN 421

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           PED+   V+  +V    + QR+  G GLGL+I    + L  G + + S   EG T
Sbjct: 422 PEDV-PLVYEPYVQLGQQFQRQLPGAGLGLTICRQLVGLMDGSMDLESRPGEGST 475


>gi|299069582|emb|CBJ40854.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CMR15]
          Length = 676

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 127/257 (49%), Gaps = 13/257 (5%)

Query: 543 VNVTDSVRAE--RAL-----TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +++T+  +AE  RAL     +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL 
Sbjct: 266 IDITEHRQAEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA 325

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    ++   +E I  S+   ++L++D+LD++ + +G + L    + L D+L   +
Sbjct: 326 MRPYDEAMFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 383

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           ++I     +  I +       +     D  RL Q+F  +L+NA+ F+ +G  V +     
Sbjct: 384 ETIEPMARQKQITVDT-EYLPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAG 442

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
               + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH G ++
Sbjct: 443 ADGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRIT 502

Query: 774 ISSSDEGV-TTINCRIP 789
            +SS   + TT+   +P
Sbjct: 503 AASSGADLGTTMAVTLP 519


>gi|296134571|ref|YP_003641813.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia
           K12]
 gi|295794693|gb|ADG29483.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia
           K12]
          Length = 914

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS----KLGSLNSKQSQYVEYISASSTI 619
           +A+ ++NS +  +S++LR+PLT ++G  ++L T       G   +   Q +  +  S   
Sbjct: 665 QAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLAAHPPGDAATLHGQALSLLQQSRR- 723

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLG 678
           L  +V+D+LD+A + +G + L      + +L+    +++ A  + ++ ++I + +D  L 
Sbjct: 724 LARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQIDLPADFPL- 782

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD   L ++   +L NA+ F+  G+ + ++A     +   +V + G  +P    ++V
Sbjct: 783 -VRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPAGRERAV 841

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F  F          GVGLGL+I  + +  HGG V+ +++ EG    N R+P  E
Sbjct: 842 FETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLPLHE 895


>gi|226324990|ref|ZP_03800508.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758]
 gi|225206338|gb|EEG88692.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758]
          Length = 592

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 12/250 (4%)

Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R  +AL  + E+ RKA    E+KN+F+ ++S+++R+P+  IIGF+D++          K 
Sbjct: 197 RLSKALELEKESTRKAKVAGEVKNAFLANMSHDIRTPMNAIIGFSDIIAEHPDDEEIVKN 256

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +  +  I AS  ILL ++ND+LDL+ +++G  ++      L  +   +K  +   + +  
Sbjct: 257 A--ISKIQASGEILLKIINDVLDLSKIESGKAEIVEMVTDLKQMEENLKMMLEYSIQKGM 314

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIF 721
           I  KV    +      D  +L Q+   +L+NA+ F+  G T+         A    ++ F
Sbjct: 315 IDFKVEDQIENPLVWCDATKLQQVLVNVLNNAVKFTQAGGTITFSCVQRMIAPGFAEYKF 374

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           ++K+ G  + E+  K  F  F     +   +  G GLGL+IV+  ++L  G V I S+  
Sbjct: 375 TIKDTGIGMTEEFQKHAFEAFERERTSTESKTEGTGLGLAIVKKLVDLMHGDVIIQSNSG 434

Query: 780 GVTTINCRIP 789
             T I   +P
Sbjct: 435 QGTKIQISLP 444


>gi|254446215|ref|ZP_05059691.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260523|gb|EDY84831.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 542

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 149/299 (49%), Gaps = 27/299 (9%)

Query: 503 IITSFDDE---RKSLQ-GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           I++  +DE   R+++Q G  E LS + L  +I+             ++ S+   R + E 
Sbjct: 102 ILSGLEDEVIAREAMQHGVQEFLSKNGLSSTILER----------TISHSIERYRLMAEL 151

Query: 559 NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           ++A +KA+   + K+ F+  +S+E R+P+  I+G  +LL     G    ++++ +  +  
Sbjct: 152 SKAKQKAEAASQAKSDFLAVMSHEFRTPMNGILGGINLLGNVCNGP---QETELLSMMKQ 208

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
            +   L L+ D+LD++ ++AG M+L Y      DL++ V  +++    E  +++ V I  
Sbjct: 209 CAESQLTLIGDVLDISKIEAGGMELAYEGFSPRDLISSVLSAVSFSAREKGVKLAVDIDR 268

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G     V+D +RL Q+   ++ NA+ F+S+G   I     D     F V + G  I    
Sbjct: 269 GLPRELVSDARRLRQVLMNLVGNAVKFTSEGEVRIHARKFDGCLVEFRVTDTGIGISPKY 328

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS----SDEGVTTINCR 787
             S+F+ F  V +++  + +G GLGL+I +  + + GG + + S      +   TI CR
Sbjct: 329 IDSIFDTFTQVDSSYSRRYQGTGLGLAICKRLVKMLGGTIRVESKVGRGSDFRFTIACR 387


>gi|146299730|ref|YP_001194321.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
           johnsoniae UW101]
 gi|146154148|gb|ABQ05002.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
           johnsoniae UW101]
          Length = 555

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 115/216 (53%), Gaps = 1/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  VS+EL++P+ +I     LL+  K G +N  Q Q VE I   S  LL
Sbjct: 328 FKELDFAKTNFIATVSHELKTPIASIKLSLQLLENGKTGDMNDDQKQLVESIKDDSQRLL 387

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +  ++L+L+ ++ G ++LN      ++++    +++  +  +  I++ V ++  L +  
Sbjct: 388 KITGELLNLSQLETGNIQLNIGKSNPHEIVKYAVEAVKVQADQKQIQLIVDANENLKNVK 447

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD ++   +    LSNA+ +SS+ ST+++K   +N   +F V + G  I       VF++
Sbjct: 448 ADAEKTGWVLINYLSNAIRYSSEKSTILIKLKEENDQMVFQVIDTGKGIDTRYKDKVFDK 507

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +       Q+ G GLGL+I + FI    G+V + S+
Sbjct: 508 YFQ-VPGSQKSGTGLGLAISKEFIEAQNGNVGVESN 542


>gi|116621166|ref|YP_823322.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224328|gb|ABJ83037.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 519

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 5/227 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  + E+ EAL +++E    F    S++L+ PL  +  +  LL     G L     Q++ 
Sbjct: 283 EERVVERTEALMRSNEELQQFAYVASHDLQEPLRTVSIYAQLLAKRYQGQLAGDADQFIR 342

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +I   S  +  L++D+LD + VDA      ++ +  ++ LN+   ++ + + EN     V
Sbjct: 343 FIVEGSERMEKLIHDLLDFSRVDARGTDY-FTRMSCDEALNDAIGNLYSLIDEN---AAV 398

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSI 730
           I+ G L S   D  +L ++F  +L N++ + S+ +  I ++A   NG+++FSV++NG  I
Sbjct: 399 ITRGPLPSLTGDPVQLTRLFQNLLVNSIRYRSEAAPRIQVEAQEQNGEWLFSVQDNGIGI 458

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                + +F  F     R +  G G+GL+I    ++ H G + + S+
Sbjct: 459 EPQYAEKIFGIFRCLQPRDKSSGSGMGLAICRKIVSRHEGRIWVESA 505


>gi|323157492|gb|EFZ43602.1| TMAO reductase sytem sensor TorS [Escherichia coli EPECa14]
          Length = 904

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|300949629|ref|ZP_07163615.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1]
 gi|300957870|ref|ZP_07170046.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1]
 gi|300315441|gb|EFJ65225.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1]
 gi|300450960|gb|EFK14580.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1]
          Length = 904

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDSRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16]
 gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16]
          Length = 870

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 531 IPLPNAQTMLTFVN-VTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           IP+        F + + D++  ++A    L E  E    A++ K+ F+ ++S+E+R+PL 
Sbjct: 337 IPIDGNDEFTRFAHELNDTIARQKAYQTKLVEAKEHAEAANQAKSVFLANMSHEIRTPLN 396

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG T++L  S+   LN  Q + +  I ASS  LL L+NDILDL+ +++G + L+  T 
Sbjct: 397 GIIGMTEILSDSQ---LNGSQKEILNDIDASSHALLVLINDILDLSKIESGNLVLSPHTA 453

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L +++ +    +  +  +  + ++V  +D        D  R+ QI   +LSNA+ FS+ 
Sbjct: 454 NLREIIFDTMNMVNAQALKQEVTLEVEFADDVPVYAEMDEFRVKQILMNLLSNAIKFSAN 513

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           GS ++  +          V + G  I  D    +F  F        RR  G GLGL+I  
Sbjct: 514 GSVLVRHSVDTQHRLNIEVLDTGVGIAADKLSDIFKPFTQEDGTITRRFGGTGLGLAICR 573

Query: 763 SFINLHGGHVSISSS 777
             + L  G + + S+
Sbjct: 574 QLVELMRGELVVESN 588


>gi|257059363|ref|YP_003137251.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589529|gb|ACV00416.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 925

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 18/236 (7%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K + +++ ++ KN F+  + +E+R+PL  + G T LL  +    LN +Q ++V  I +S 
Sbjct: 251 KQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDT---PLNPQQEEFVNIIRSSG 307

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGK 676
             LL ++N+ILD + ++A  ++L      L   + EV +    +  +  + +  +I    
Sbjct: 308 ENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQLELAYLIEPNT 367

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------------NGDFIFSVK 724
             + V D  RL QI S +L NA+ F+ KG  V+  +A+             N +  F+VK
Sbjct: 368 PSAIVGDSTRLRQILSNLLGNAVKFTEKGEVVVYVSAQPLPNSDRTDKTLANYELRFAVK 427

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           + G  I    C  +F  F        R+  G GLGL I +    L GG + + S++
Sbjct: 428 DTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKMWVHSTE 483


>gi|300982788|ref|ZP_07176298.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 200-1]
 gi|300307053|gb|EFJ61573.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 200-1]
 gi|324013383|gb|EGB82602.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 60-1]
          Length = 900

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|256018746|ref|ZP_05432611.1| hybrid sensory histidine kinase TorS [Shigella sp. D9]
          Length = 904

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|121585528|ref|ZP_01675324.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121725847|ref|ZP_01679147.1| sensor protein TorS [Vibrio cholerae V52]
 gi|147672464|ref|YP_001215487.1| sensor protein TorS [Vibrio cholerae O395]
 gi|153818582|ref|ZP_01971249.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|262168553|ref|ZP_06036249.1| sensor protein TorS [Vibrio cholerae RC27]
 gi|121550145|gb|EAX60159.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121631612|gb|EAX63980.1| sensor protein TorS [Vibrio cholerae V52]
 gi|126510865|gb|EAZ73459.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|146314847|gb|ABQ19387.1| sensor protein TorS [Vibrio cholerae O395]
 gi|262023082|gb|EEY41787.1| sensor protein TorS [Vibrio cholerae RC27]
          Length = 984

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 122/217 (56%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L++E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|328947720|ref|YP_004365057.1| histidine kinase [Treponema succinifaciens DSM 2489]
 gi|328448044|gb|AEB13760.1| histidine kinase [Treponema succinifaciens DSM 2489]
          Length = 705

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 166/351 (47%), Gaps = 49/351 (13%)

Query: 472 NRLSPGTHIRNIAATCSRYYNES-------DGWDLFAAIITSFDDERK------SLQGTL 518
           N +S    I  I    S +YNES       D  D +A++ + ++D+R       S +  L
Sbjct: 195 NVMSGIIRIVRINDRISSFYNESLEGLPYDDVLDFYASV-SVYEDDRDMIKRAFSRENIL 253

Query: 519 ELLSD----------------SVLEYSIIPLPN----AQTMLTFVNVTDSVRAE----RA 554
           + LS                 S ++ +++ + N       ++ F+NV      E    +A
Sbjct: 254 KQLSKRESYYVNFRSYINNKISYMKLTVVRIGNIRETGNVLMGFMNVDTETEHEMKQRKA 313

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E       A   K+ F+ ++S+++R+P+  IIG+T L +   +G+    +S     I 
Sbjct: 314 LQEALSMAELASHAKSRFLSNMSHDIRTPMNAIIGYTSLAE-KHIGNPELIKSDLAR-IK 371

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S+ LL L+ND+LD++ +++G +K+ +++  + D+L EV   I  ++    +   V+  
Sbjct: 372 TNSSYLLCLINDVLDMSRIESGKIKIKFTSNTIEDILAEVDSVIQPQLQSKKLNYSVLRH 431

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNG--DFIFSVKNNG 727
           G L   V  D+ RL QI   IL N++ ++ +  ++   AA      +G   + F +K+NG
Sbjct: 432 GNLSRKVFCDKLRLKQILINILGNSVKYTGENGSIKFTAAETPSVSDGYSSYQFRIKDNG 491

Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             + E+  K VFN F    N      +G GLGLSI ++ +    G + + S
Sbjct: 492 IGMSEEFQKKVFNPFERDENIENFHVQGTGLGLSISKNLVEKMDGSIFLKS 542


>gi|331657054|ref|ZP_08358016.1| TMAO reductase sytem sensor TorS [Escherichia coli TA206]
 gi|331055302|gb|EGI27311.1| TMAO reductase sytem sensor TorS [Escherichia coli TA206]
          Length = 715

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 244 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 300

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 301 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 360

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 361 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 419

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 420 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 466


>gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 968

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 139/250 (55%), Gaps = 19/250 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYV 610
           +AL+E   A   A++ K++F+ ++S+++R+P+  IIGFT L     + +++ K+    Y+
Sbjct: 441 QALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTL----AVSNIDDKERVRDYL 496

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+++K  I+ ++H   + + 
Sbjct: 497 GKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDILHDLKTIISGQIHAKQLELY 556

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSV 723
           + + D        D+ RL Q+   +LSNA+ F+  G TV ++  +  G       +   V
Sbjct: 557 MDAMDITNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQRPGTQKGSELYEIRV 616

Query: 724 KNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           K+NG  + ++  + +F  F     S   R Q  G GLG++I ++ +++ GG + + +   
Sbjct: 617 KDNGIGMSQEFVQKIFAPFERERTSTVSRTQ--GTGLGMAITKNIVDMMGGTIEVQTEQG 674

Query: 780 GVTTINCRIP 789
             T    R+P
Sbjct: 675 KGTEFIVRLP 684


>gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1467

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G    V +  + ++      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDEDKHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            RF    NA     +G G+GL++ +  I+LH G +   S +
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPE 1151


>gi|227884054|ref|ZP_04001859.1| hybrid sensory histidine kinase TorS [Escherichia coli 83972]
 gi|300978247|ref|ZP_07174195.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 45-1]
 gi|301047751|ref|ZP_07194807.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 185-1]
 gi|227838806|gb|EEJ49272.1| hybrid sensory histidine kinase TorS [Escherichia coli 83972]
 gi|300300360|gb|EFJ56745.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 185-1]
 gi|300409712|gb|EFJ93250.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 45-1]
 gi|315291163|gb|EFU50526.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 153-1]
          Length = 900

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|16124840|ref|NP_419404.1| sensory box histidine kinase [Caulobacter crescentus CB15]
 gi|13421786|gb|AAK22572.1| sensory box histidine kinase [Caulobacter crescentus CB15]
          Length = 716

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 16/304 (5%)

Query: 499 LFAAIITSFDDERKSLQGTLELLS----------DSVLEYSIIPLPNAQTMLTFVNVTDS 548
             A    S  D+R SL   L  LS             LE     +P A T  TF ++TD 
Sbjct: 273 FIAGAFESRGDKRPSLDTELRFLSVDGDYRWMEGKGWLERDADGVPVALTS-TFRDMTDR 331

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              E +L         A   K++F+ ++++ELR+PLT++IGF + ++     +L+     
Sbjct: 332 HSLEESLIAARVRAEAAVRAKSAFLANMTHELRTPLTSVIGFAEQIQAEP--ALSPTVRH 389

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             + ISA    LL+ +NDILD + +++G + +  +   +N L+ E    ++ +     + 
Sbjct: 390 ASDRISAGGRALLSTINDILDFSKLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLS 449

Query: 669 IKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +       LG   A D Q + Q+   ++ NA+ F+ +G   +     D+G    +V + G
Sbjct: 450 LSYDGSAVLGLCAALDSQHVRQVLLNLIGNAIKFTEQGGVTVTAQRNDDGMLEIAVADTG 509

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ED  + +F RF        RR  G GLGL+I        GG + +SS+    +T  
Sbjct: 510 IGIAEDHLERLFGRFSQVDDTIARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFT 569

Query: 786 CRIP 789
             +P
Sbjct: 570 LTLP 573


>gi|281418070|ref|ZP_06249090.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|281409472|gb|EFB39730.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316939890|gb|ADU73924.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 589

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 128/239 (53%), Gaps = 22/239 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTI 619
           +RK ++I+  FV +V++EL++P+T+I GF + LK    G++N+     +++E I   +  
Sbjct: 359 VRKLEQIRTEFVSNVTHELKTPITSIRGFIETLKN---GAMNNPVVAERFLEIIDIEAER 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMH---ENNIRIKVIS 673
           L  L+NDIL L+ ++  +   N     L  ++++   V Q+IA +      NN+R +V+ 
Sbjct: 416 LHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL- 474

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                   A+  R+ Q+   ++ N + ++ +  +V +   R++G  + SVK+ G  IP  
Sbjct: 475 ------MKANINRMKQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSA 528

Query: 734 MCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RF     +G+ RG+   GLGLSIV+  +NL+ G + ++S     T    +IP
Sbjct: 529 HIPRIFERFYR-VDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586


>gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1234

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 28/337 (8%)

Query: 458 LSNPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           + NPA+ S+   + N   P   + I  +     R   E       A  + +FD E + L 
Sbjct: 607 ICNPAYYSMLGYKVNEF-PALVSTIDELIHPDDRIRVEEYREQYLANPVGAFDIEFRMLG 665

Query: 516 ---GTLELLSDS-VLEYSIIPLPNAQT--ML-TFVNVTDSVRAERALTEKNEALRKADEI 568
              G   LLS   V+EY+    PN Q   ML T  ++T   R E A+ E  +    A+  
Sbjct: 666 KSGGYHWLLSRGRVVEYT----PNNQPKRMLGTHKDITRHKRNEVAMLEAKQDAEMANLY 721

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  IIG   +L+ ++  SL  +Q  Y+E    S+  LL ++NDIL
Sbjct: 722 KSEFLANMSHEIRTPMNAIIG---MLQLAQRTSLTPQQKDYLEKAGFSAHSLLRIINDIL 778

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++AG ++L      L+ +L+      A K  E  + + + +    G  +  D  RL
Sbjct: 779 DFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRL 838

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNR 741
            Q+   +LSNA+ F+  G   +     D G+        F +++ G  I ++   ++F+ 
Sbjct: 839 GQVLINLLSNAVKFTQSGEIEL--GCEDVGERDHRITLKFWIRDTGIGISKEQQATLFDA 896

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F        R+  G GLGLSI +  ++L GG + + S
Sbjct: 897 FAQADGSTTRKYGGTGLGLSISKHLVSLMGGTMQVES 933


>gi|46202643|ref|ZP_00052865.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 848

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 1/190 (0%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + + +RAER L    E    A+  K  F+ +VS+ELR+PL  +IGF++++ +   G L S
Sbjct: 569 IAEHIRAERELVAAKEQADLANRAKTEFLANVSHELRTPLNAVIGFSEVMASEMFGPLGS 628

Query: 605 -KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            + + YV  I  S   LL ++NDILD+A ++AG M+ +   +   +++    + + ++  
Sbjct: 629 ARYAGYVNDILTSGRHLLAVINDILDIAKIEAGQMEFDMEPVEPAEVVAAAIRIVESRAD 688

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +       +    ADR+RLLQI   +LSN++ F+ +G  V +   +   D  F+V
Sbjct: 689 SGGLFLGTHIAEDVPILRADRRRLLQILVNLLSNSVKFTPEGGRVEVTVEKIGVDVGFTV 748

Query: 724 KNNGSSIPED 733
            + G  + ED
Sbjct: 749 ADTGIGMSED 758


>gi|323190649|gb|EFZ75919.1| TMAO reductase sytem sensor TorS [Escherichia coli RN587/1]
          Length = 900

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|320196519|gb|EFW71142.1| Sensor protein torS [Escherichia coli WV_060327]
          Length = 900

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|307311622|ref|ZP_07591262.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|306908177|gb|EFN38676.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|315060277|gb|ADT74604.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli W]
          Length = 899

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 424 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 480

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 481 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 540

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 541 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 599

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 600 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 646


>gi|258626849|ref|ZP_05721656.1| sensor histidine kinase [Vibrio mimicus VM603]
 gi|258580896|gb|EEW05838.1| sensor histidine kinase [Vibrio mimicus VM603]
          Length = 733

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 129/256 (50%), Gaps = 19/256 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 332 TFNQKTVYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 384

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS   L  ++  +K   ++
Sbjct: 385 --TAKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSS 442

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              E  ++ ++   I D +   +  D+ RL QI   +LSNA+ F+ +G   +  +  + G
Sbjct: 443 LCFEKGLQFQLHSEIIDTRW--YYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIG 500

Query: 718 DFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D  F    V+++G  IP+D    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 501 DEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTV 560

Query: 773 SISSSDEGVTTINCRI 788
           S+ S     T    R+
Sbjct: 561 SVQSEVGQGTCFEVRV 576


>gi|283797301|ref|ZP_06346454.1| sensor histidine kinase [Clostridium sp. M62/1]
 gi|291074971|gb|EFE12335.1| sensor histidine kinase [Clostridium sp. M62/1]
          Length = 373

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 127/249 (51%), Gaps = 7/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VN+   V   R L EK    R+A+  KN  + +V+++LR+PLT+IIG+ +LL + K    
Sbjct: 116 VNLNRMVEDIRRLMEKE---REAERTKNELITNVAHDLRTPLTSIIGYLELL-SGKTELP 171

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q +Y++   A +  L  L+ D+     ++ G + ++   + +  LL ++ +      
Sbjct: 172 PEIQKKYIDIAYAKAKRLEKLIEDLFGFTKMNYGKLSMHVGKVDIVKLLGQLLEEFYPNF 231

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N+  ++ S+       AD   L ++F  +++NA+ + + G  V+++    +     S
Sbjct: 232 VDRNLSYELHSNVPAKVIDADGNLLARLFDNLINNAIKYGADGKRVLVQIHAGDEVVSVS 291

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V N G  IP D    +FN+F  V  +      G GLGL+I +S +++HGG + + S  +G
Sbjct: 292 VTNYGYVIPADELPLIFNKFYRVEQSRSTHTGGTGLGLAIAKSVVDMHGGTIQVKSDLDG 351

Query: 781 -VTTINCRI 788
            V T+  ++
Sbjct: 352 TVFTVKLKV 360


>gi|225027608|ref|ZP_03716800.1| hypothetical protein EUBHAL_01865 [Eubacterium hallii DSM 3353]
 gi|224955064|gb|EEG36273.1| hypothetical protein EUBHAL_01865 [Eubacterium hallii DSM 3353]
          Length = 690

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 13/241 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  E  + A E K  F+ ++S+++R+P+  I+GF+ LL+ +       K  +Y+ 
Sbjct: 293 EAELKKSAEQAKNASEAKTRFLFNMSHDIRTPMNAIVGFSGLLEKNLQNE--KKAKEYLG 350

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +SS +LL ++N IL++A +++G   L      ++ L + V       + + N++   
Sbjct: 351 KIQSSSNLLLMIINQILEMARIESGTAVLQLKAEDMDALFHRVNTVFEEDIRKKNLQYYA 410

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGD---FIFSVKN 725
             D +    V D+ +L +I   I+SNA+ ++ +G ++   I +AA +N     +IFS ++
Sbjct: 411 DLDIRHHYVVCDQTKLQEIMLNIISNAIKYTPEGHSIYVEIHEAASENPSKIHYIFSCED 470

Query: 726 NGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  + E+    V+  F S  H     + +G GLGLSI++S I L  G + + S  +G+ 
Sbjct: 471 TGIGMSEEYLPHVYEEF-SREHTTTENKVQGTGLGLSIIKSMIELMDGSIQVESR-QGIG 528

Query: 783 T 783
           T
Sbjct: 529 T 529


>gi|209918246|ref|YP_002292330.1| hybrid sensory histidine kinase TorS [Escherichia coli SE11]
 gi|209911505|dbj|BAG76579.1| two-component sensor kinase [Escherichia coli SE11]
 gi|324019115|gb|EGB88334.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 117-3]
          Length = 904

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|169335485|ref|ZP_02862678.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM
            17244]
 gi|169258223|gb|EDS72189.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM
            17244]
          Length = 1313

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 120/222 (54%), Gaps = 15/222 (6%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+  +S+E+R+P+  IIG T++    +   L +   +Y+E IS SS  LL+++
Sbjct: 936  ASKAKSDFLSRMSHEIRTPMNAIIGMTNI--AMEENGLKNSTKEYLEKISTSSEYLLSII 993

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            NDILD++ +++G MKL+ S   L +L++EV+  I  +  +  +   V ++        D 
Sbjct: 994  NDILDMSRIESGKMKLSPSNFSLTNLIDEVETLIRPQAEDKELNFNVKANVNDDVLYGDY 1053

Query: 685  QRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
             R+ QI   +L NA+ F+ SKG+ ++     D  D      F VK++G  I  +  + VF
Sbjct: 1054 MRINQILINLLGNAIKFTQSKGNILLCVREEDYNDKQSKVTFIVKDDGIGISSENKERVF 1113

Query: 740  NRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + F      ++ H G   G GLGL+I  + + L G ++ + S
Sbjct: 1114 HAFEQAEDDTSIHYG---GTGLGLAICNNLVKLMGSNIELES 1152


>gi|154276398|ref|XP_001539044.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1]
 gi|150414117|gb|EDN09482.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1]
          Length = 2319

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 32/259 (12%)

Query: 552  ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL+   EA RK                 A + K+ F+ +VS++LR+P+  +IG ++LL
Sbjct: 1774 KRALSLAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELL 1833

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   +L+ +Q  YVE I   +  LL L+NDILD + ++AG MK++   + L + + EV
Sbjct: 1834 KKT---NLDREQDGYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEV 1890

Query: 655  KQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             +++     +  ++     DG       + D  RL QIF  +LSN+  F+ KGS  +   
Sbjct: 1891 VRALRYTHRDRGLQTIEDLDGVDPKLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAK 1950

Query: 713  ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
            A D  D        V + G  I  +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 1951 AADEDDGRIRITCKVADTGIGISGEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAII 2009

Query: 766  -NLHGGHVSISSSDEGVTT 783
             ++ GG + +  S+EGV T
Sbjct: 2010 EDVLGGKIWL-QSEEGVGT 2027


>gi|332976591|gb|EGK13432.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 407

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 16/238 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +RAL      +R++ E +  FV   S+ELR+PLT I   T+LL      ++  K S  +
Sbjct: 169 GKRALV----PIRQSWEAQQQFVADASHELRTPLTVIQTRTELLLQHPHQTVQEK-SDDI 223

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I   +  +  LVND+L LA  D+  ++LN  T  +++LL EV            I ++
Sbjct: 224 SAIYRETRRVRRLVNDLLTLARSDSNQLELNRQTFDVSELLKEVADHFTELTELEGITLQ 283

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              +  L     DR+R+ Q+   +L NA+ F+S G T+     +        VK+ G+ I
Sbjct: 284 TGIESNLLCN-GDRERIHQLLVILLDNAVKFTSSGGTIHFTCRKKGPQLFIEVKDTGTGI 342

Query: 731 PEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
                  +F+RF    +RG R       G GLGLSI +  ++ HGG++S+ S+ EG T
Sbjct: 343 SGKDLPRIFDRF----YRGDRARGRTDGGTGLGLSIAKWIVDKHGGNISVKSNSEGTT 396


>gi|329850148|ref|ZP_08264994.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842059|gb|EGF91629.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 1140

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + R    +  ++EA+  A   K+ F+  +S+E+R+P+  ++   +LL      SL +K  
Sbjct: 237 AARTADYVAARDEAV-AATAAKSDFLATMSHEIRTPMNGVMVMAELLAAE---SLPAKAR 292

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++ + I+ S   LL ++NDILD + ++AG +++  + + + DL +++      K  E  +
Sbjct: 293 RHAQTIAKSGRSLLAVINDILDFSKIEAGKLEVETTEVDILDLCDDIITLFQAKAREKGL 352

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            + V +       V AD  RL Q+ S ++SNA+ F+ +G   +         +  SV++ 
Sbjct: 353 ELAVSAHPDAPRIVPADPVRLGQVLSNLISNALKFTDQGLVAVAIEPGPGRSWKLSVRDT 412

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I  D    +F  F        RR  G GLGL+I    +   GG VS++S
Sbjct: 413 GIGIAADKLPKIFAAFSQEDQTTTRRFGGTGLGLTIARRLVEAMGGEVSVTS 464


>gi|294812875|ref|ZP_06771518.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|294325474|gb|EFG07117.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 738

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 6/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           + + V  V++ELR+PL+NI G+   L+ ++ G +    + +V+ +   +  L ++++D+ 
Sbjct: 500 RRAMVSDVAHELRTPLSNIRGW---LEGAQDG-VAEPDAAFVDSLLEEAVQLQHIIDDLR 555

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA  DAG ++L    +   +LL +V  +   +  E    ++V     +    AD  RL 
Sbjct: 556 DLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSADPVRLR 615

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q    +LSNA+  + +G +V L+AA         V + G  I  +    VF+RF      
Sbjct: 616 QAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRFWRAEKS 675

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776
             RR  G GLGL+IV      HGG V++ S
Sbjct: 676 RSRRTGGSGLGLAIVRKLTEAHGGAVTVES 705


>gi|293369955|ref|ZP_06616522.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634873|gb|EFF53395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 479

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 118/216 (54%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P+  I+    LL+  ++G+LN +Q Q  + I  +S  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG ++         +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 311 SITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   VI+ A +D       V++ G  I     KS+F+
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGIDPRYHKSIFD 430

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 431 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 465


>gi|229528414|ref|ZP_04417805.1| sensor protein TorS [Vibrio cholerae 12129(1)]
 gi|229334776|gb|EEO00262.1| sensor protein TorS [Vibrio cholerae 12129(1)]
          Length = 984

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
 gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
          Length = 1378

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 4/244 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R+ +A   + E L + D  K +F  ++S+E R+PLT I+G  + L+  +L   +    
Sbjct: 323 SARSYQAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELR-DRLTDADPGLR 381

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +E +  +   L  LVN +LD + ++AG M+ +Y  + L  +  E+     + + +  +
Sbjct: 382 EELEVVHRNGLRLGKLVNTLLDFSRIEAGRMQAHYEPVDLARVTGELASVFRSAVDKAGL 441

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +V           DR    ++   +LSNA+ F+  GS + +    + G  + +V + G
Sbjct: 442 DFRVHCSPLPEPVFVDRSMWEKVVLNLLSNALKFTFDGS-IRVAVGVEEGAAVVTVDDTG 500

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +       +F RF  + NA      G G+GL++V+  + LHGG +S +S++   T   
Sbjct: 501 IGVAAKEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGEISATSAEGEGTRFT 560

Query: 786 CRIP 789
            R+P
Sbjct: 561 IRLP 564


>gi|162451033|ref|YP_001613400.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161161615|emb|CAN92920.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 794

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 4/231 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++ +  +  ++  ++++LR P+  I   + LL  +      +   + ++ I++S   L
Sbjct: 555 AFKEMERQRQEWIGVIAHDLRQPIQVIATASQLLGRAAGERPVADCRKQLDRITSSIERL 614

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             +++D+LD + +DA  + L+ S + L   L E+ +  A     + +R++V  +G + + 
Sbjct: 615 RRMIDDLLDASRIDARQLTLDRSPVNLRAQLGEILEKSAEVTAGHALRLEV--NGDVPAV 672

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +AD  RL QI + +LSNA  +      +++      G    +V N G  IPE     +F 
Sbjct: 673 LADPGRLEQIVTNLLSNAAKYGRPDGDIVVAVDAGPGSAHVAVTNWGGGIPEASLPYLFK 732

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF    +A     RGVGLGL I ++ +  HGG +S+ SS  G TT    +P
Sbjct: 733 RFSRAPDAVPRSVRGVGLGLYITKALVEAHGGSISVESSPSGATTFRFSLP 783


>gi|120556578|ref|YP_960929.1| multi-sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326427|gb|ABM20742.1| multi-sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 638

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 7/232 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A+ +K+ F+  VS+ELR+PLT+I G   LL T+ +G L+ K  Q ++    +S  L  
Sbjct: 409 KEAERLKSEFISTVSHELRTPLTSISGALSLLTTNAVGELSGKAQQLLKIAQRNSDQLGF 468

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+LD+  + AG M  N     +++ + E  ++I     E NI +    +    +  A
Sbjct: 469 LINDLLDIEKLIAGKMDFNVIEFPVSEAITESLENIQNYATEKNITLNA-QELSTTTVKA 527

Query: 683 DRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D+QRL Q  + ILSNA+ FS   G   I       G  I+ V++ G  I  +  + +F +
Sbjct: 528 DKQRLAQALNNILSNAIKFSPVNGQIRIWTKLHGQGLRIY-VQDEGPGIAPEFRERMFQK 586

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F S A    RR   G GLGL+I +  +    G V  +S      T    +P+
Sbjct: 587 F-SQADSSDRRSKGGTGLGLAITKELMARMEGDVDFTSEAGQGATFWLEVPA 637


>gi|323496760|ref|ZP_08101805.1| histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323318185|gb|EGA71151.1| histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 1098

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 14/245 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T    A+     ++E    A E K+ F+ ++S+E+R+P+  ++G   LL  ++L   
Sbjct: 411 IDITKEKNAQENFRHESETALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSETEL--- 467

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N++Q   V  I  S+  LL+++NDILD + ++AG M L    + L  L+      +  + 
Sbjct: 468 NTEQKNMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQA 527

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS-----KGSTVILKAARDN 716
               I + +  D  L   + +D  RL Q+   I+ NA+ F+      KG   +     D+
Sbjct: 528 SNKGIELYLTYDANLPKVIMSDSVRLSQVLLNIIGNAVKFTDSNDDVKGKVWVSATLNDH 587

Query: 717 --GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
               +I   V++NG  + E+  K +FN F        R   G GLGLSI  S + L GG+
Sbjct: 588 EIAPYIEIIVEDNGIGMTEEQMKRLFNAFTQADTSTTRLYGGTGLGLSITNSLLELMGGN 647

Query: 772 VSISS 776
           + + S
Sbjct: 648 IKVDS 652


>gi|323174897|gb|EFZ60512.1| TMAO reductase sytem sensor TorS [Escherichia coli LT-68]
          Length = 904

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1033

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 195/427 (45%), Gaps = 53/427 (12%)

Query: 380 SVYKSSETHKDT-WHLPNGQTLHVIVTSNP--------RGGTIWMFENLTVQVDLE-TKY 429
           SV +     K+T  +  +GQ L V++   P         G +I+   +   Q + E TK 
Sbjct: 331 SVLEGENVEKETVRYCRDGQPLDVLIKGGPVYVAGEIVGGYSIYSDISGRKQAERELTKQ 390

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCS 488
           N L++     I+ + + +A+  PD  IK  N A +++L K+ E                 
Sbjct: 391 NQLLE---GIINGIPDILAIQYPDHSIKRYNQAGYQALNKSPEQ-------------VAG 434

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSII------PLPNAQTMLT 541
           R   E  G D    +  +    R++L  GTL+ +   V E  +       P+ N Q  + 
Sbjct: 435 RKCFELIGRDRECEVCAT----REALNTGTLQQVEKYVPELDVYMDCRSNPIFNEQGEIL 490

Query: 542 FV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++     ++T   + E  L    E    A + K+ F+ ++S+E+R+P+  I+G  +++ +
Sbjct: 491 YIIEQLRDITQRKKDEIELIVAKEQAEAASKAKSEFLANMSHEIRTPMAGIMGALEMV-S 549

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++     S++   +   SA S  L  ++NDILDL+ V+AG +++ +       L   V  
Sbjct: 550 ARTDDEESRRLMKMTLESARS--LQQIINDILDLSKVEAGKLEIEHQEFDPQSLFKRVMD 607

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LK 711
             + +  E NI +++  + G       D+ RL Q+   ++SNA+ F+S+G  ++    ++
Sbjct: 608 LYSIQAGEKNIELQLDTAPGIPRRLCGDQYRLEQVLRNLVSNAVKFTSQGRVILRVRPVQ 667

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
           AA       F V++ G  I ED    +F+ F    + +  + +G GLGL+I    + + G
Sbjct: 668 AASGKARLNFEVEDTGVGIKEDFLPRLFDSFTQADSTYGKKHQGTGLGLAISNRLVQMMG 727

Query: 770 GHVSISS 776
           G +   S
Sbjct: 728 GDIQAQS 734


>gi|168186495|ref|ZP_02621130.1| sensory transduction histidine kinase [Clostridium botulinum C str.
            Eklund]
 gi|169295498|gb|EDS77631.1| sensory transduction histidine kinase [Clostridium botulinum C str.
            Eklund]
          Length = 1668

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 133/243 (54%), Gaps = 10/243 (4%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQS--QYVEYISA 615
            NE++ K +E++  F  ++S+ELR+PL  I  G+  L       +L++K+   +Y++ +  
Sbjct: 1400 NESI-KYEEMRTEFFANISHELRTPLNVIFSGYQMLNLLLGNENLDNKEKVDKYMDTMKQ 1458

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +   L+ L+N+++D+  +D+G  +LN   + +  ++  +  S+A  +    I +   +  
Sbjct: 1459 NCYRLVRLINNLIDITKIDSGFFELNMINVNIVSIVETITLSVAQYIESKGINLIFDTFV 1518

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +      D  ++ +I   +LSNA+ F++KG  + +    ++ + I SVK++G  IP++  
Sbjct: 1519 EEKVMACDVDKIERIILNLLSNAVKFTNKGGNIFVTMYEEDDNIIISVKDDGIGIPQEKQ 1578

Query: 736  KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS----DEGVTTINCRIP 789
              +F+RF  V  +    R G G+GL++V+S + LHGG++S+ S      E +  + C + 
Sbjct: 1579 AIIFDRFIQVDKSLSRNREGSGIGLALVKSIVELHGGNISLKSKLREGSEFIIKLPCNVL 1638

Query: 790  SKE 792
             K+
Sbjct: 1639 EKQ 1641


>gi|148543357|ref|YP_001270727.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri DSM 20016]
 gi|184152767|ref|YP_001841108.1| two-component system histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|227364431|ref|ZP_03848521.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri MM2-3]
 gi|325683630|ref|ZP_08163146.1| sensor histidine kinase [Lactobacillus reuteri MM4-1A]
 gi|148530391|gb|ABQ82390.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri DSM 20016]
 gi|183224111|dbj|BAG24628.1| two-component system histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|227070524|gb|EEI08857.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri MM2-3]
 gi|324977980|gb|EGC14931.1| sensor histidine kinase [Lactobacillus reuteri MM4-1A]
          Length = 381

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 139/263 (52%), Gaps = 15/263 (5%)

Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N Q ++T VN + DS  A R++ ++    RK ++ K+  + +VS++LR+PLT+IIG+  L
Sbjct: 121 NQQHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGL 174

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +  S      +Y       +  +  LV+D+ +   V      +N   I LN L+ +
Sbjct: 175 IEDKQYRS-EEDILKYTHTAYEKAKQMKTLVDDLFEYTKVQQHGAPVNIMKIDLNQLIEQ 233

Query: 654 VKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  S   +     I I   VI +  +    AD ++L ++F+ ++SNA  + +  S + + 
Sbjct: 234 LTASFELEAQHRGIEITSSVIPNPLM--IEADPEKLGRVFNNLVSNAFKYGNGASYIRIN 291

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHG 769
           A ++N   +  V N+G+ IPE     +F RF  + A R +   G GLGL+IV+S ++LH 
Sbjct: 292 ARQENDMVVVKVANDGTPIPEKALDHLFERFYRAEASRSRATGGTGLGLAIVKSIVDLHH 351

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G V ++S+++    I   +P K+
Sbjct: 352 GSVKVTSTEDETAFI-VTLPLKQ 373


>gi|293394393|ref|ZP_06638692.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM
           4582]
 gi|291423082|gb|EFE96312.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM
           4582]
          Length = 1209

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 169/354 (47%), Gaps = 32/354 (9%)

Query: 454 GRIKLSNPAFRSLWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           G + +SNPA+R+ +  E         ++  SP   +   AA   R  ++ +        +
Sbjct: 596 GELVMSNPAWRNFFHGEARETGLCGPQHVASPLHQVWQTAA--ERLLDQHNPHHSHTDTV 653

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQT---MLTFVNVTDSVRAERALTEKNE 560
             FD ER+           +V+ Y++     +A     +  ++++T+     +AL +  E
Sbjct: 654 DIFDGERQR----------TVVHYAVTYARSDAHVDGLICAWMDITEHQALAKALHDARE 703

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              +A+  K++F+  +S+E+R+P++ IIG  +L   +   + + +    V + SA S  L
Sbjct: 704 NAEQANRAKSTFLATMSHEIRTPVSAIIGLLELAVKTSDQARDREDPVRVAWESARS--L 761

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
           + ++ DILD+A +++G ++L+   +   +LL  V +       +  +R++     +L   
Sbjct: 762 MGVIGDILDMARIESGRLELSPEWLRTTELLPPVVRVFEGLARQKGLRLRSSLPTQLPYE 821

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN-GDFIFSVKNNGSSIPEDMC 735
              D  R+ Q+ S ++SNA+ F+ +G   I   L A  D       SV+++G  I E   
Sbjct: 822 IFVDPLRIRQVISNLVSNAVKFTEQGGIDIDLDLAALPDGRAQLNISVQDSGRGISEAEQ 881

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +F+ +V   +     G GLGL+I    +N+ GG +++SS     T ++  IP
Sbjct: 882 QDIFDPWVQAKNGSVTGGSGLGLAICAQLVNMMGGEIAMSSRPAQGTRVSFSIP 935


>gi|254787007|ref|YP_003074436.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
 gi|237685955|gb|ACR13219.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
          Length = 668

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 5/237 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+    + A+ +   A  +A++ K+ F+  +S+ELR+PL  I+G+  L       +L
Sbjct: 268 MDITELKNTQLAVVQAKVAAEQANQAKSEFLSSMSHELRTPLNAILGYVQLFDYDT--NL 325

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   ++ +  + T LL+L+N++LDLA ++AG M L+   +    LL+E  + ++   
Sbjct: 326 TPDQCDNLQEVKKAGTHLLHLINEVLDLAKIEAGRMTLSMEPVYPQRLLDEAVRLVSPLA 385

Query: 663 HENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFI 720
            E  I I+  +   +  +  AD  RL Q    ++SNA+ +++K GS  I   A   G   
Sbjct: 386 QEQGITIERDALQHQQSAIFADNTRLKQALLNLISNAVKYNTKDGSVNISLTAVGEGRLR 445

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V + G  IP+ +   VF  F   +A  G   G G+GL I +  + + GG +   S
Sbjct: 446 IMVTDTGRGIPDALQAQVFEPFNRLHAELGAVEGSGVGLVITKRLVEMMGGTLGFHS 502


>gi|153820784|ref|ZP_01973451.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229510010|ref|ZP_04399490.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229516429|ref|ZP_04405876.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229605664|ref|YP_002876368.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255746528|ref|ZP_05420475.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262158884|ref|ZP_06029997.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
 gi|126521827|gb|EAZ79050.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229346310|gb|EEO11281.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229352455|gb|EEO17395.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229372150|gb|ACQ62572.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255736282|gb|EET91680.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262029457|gb|EEY48108.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
          Length = 984

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 122/217 (56%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L++E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 2198

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 16/243 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A  +L +K E L  + + K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y
Sbjct: 1510 QARMSLEDKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNIDNNLTTKQVEY 1569

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I ++ T LL L+NDILDLA +++G M ++ + + L +L  +++++         +  
Sbjct: 1570 SQTIYSAGTDLLALINDILDLAKIESGTMSIDMTQMPLVELGEQIERTFRQVAQSKGLAF 1629

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFI----- 720
             +     L + +  D +RL Q+   +LSNA  F+ +G   +  A    G   D +     
Sbjct: 1630 TIEFTPDLPTTIYTDIKRLQQVLKNLLSNAFKFTEQGEVRLQIAVAKQGWSNDQVTLNRA 1689

Query: 721  -----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 FSV + G  I  D  K +F  F        RR  G GLGLSI      L GG + 
Sbjct: 1690 QNVIAFSVSDTGIGIAPDKQKVIFEAFQQADGSTSRRYGGTGLGLSISREIARLFGGEIK 1749

Query: 774  ISS 776
            ++S
Sbjct: 1750 LTS 1752


>gi|167761783|ref|ZP_02433910.1| hypothetical protein BACSTE_00123 [Bacteroides stercoris ATCC
           43183]
 gi|167700289|gb|EDS16868.1| hypothetical protein BACSTE_00123 [Bacteroides stercoris ATCC
           43183]
          Length = 644

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 24/243 (9%)

Query: 550 RAERAL-TEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           R E AL T+K E LR     A   K+ F+ ++S+E+R+PL  + GF+ LL    L   N 
Sbjct: 390 RQEIALSTQKLEHLRTNAENATSAKSIFLSNMSHEIRTPLNALSGFSSLLTEENLD--NE 447

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYSTIVLN--DLLNEVKQS 657
            + Q  E I  +S +LL L+ND++DL++++ G     I K N   I  N  D ++++KQ+
Sbjct: 448 TRRQCNEVILQNSELLLKLINDVIDLSSLEFGKIQFCINKYNVVNICRNVIDTVSKIKQT 507

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A         I  I++ +      D  RL Q+   +L NA  F+S+GS ++    +   
Sbjct: 508 QAA--------ICFITELESMDIETDDARLQQVLINLLINATKFTSQGSIILELRKQSEQ 559

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + +FSV + G  IP++   ++F RF       Q  G GLGLSI +  I   GG + I S 
Sbjct: 560 ELLFSVTDTGCGIPKEKQAAIFRRFEKLNENAQ--GSGLGLSICQLIIEHIGGKIWIDSD 617

Query: 778 DEG 780
             G
Sbjct: 618 YTG 620


>gi|73855027|gb|AAZ87734.1| sensor protein torS [Shigella sonnei Ss046]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 453

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTIL 620
           RK + ++  FV +VS+ELR+PLT+I GF + L     G++        ++E ISA    L
Sbjct: 224 RKLERMRTEFVANVSHELRTPLTSINGFVETLLD---GAIEEPIIARNFLEIISAEGKRL 280

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            N+++D+L L+ ++    KLN   + L +++         +  E NI+I      KL   
Sbjct: 281 ANIIDDLLKLSRLEDRRTKLNKQPVDLAEVIGNTITMFEGRALEKNIQITTEISPKLPLV 340

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D+  L Q+   ++ NA+ ++  G TV +    +  +   +V + G  IP +    VF 
Sbjct: 341 PGDQGFLSQVMINLVDNAIKYTLTGGTVHISVKFNEHEVTVTVSDTGIGIPIESIPRVFE 400

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF  V  A   +  G GLGLSI +  +  HGG + + S   G +  +  +P KE
Sbjct: 401 RFYRVDKARSREMGGTGLGLSICKHIMEAHGGKIRVESDSSG-SQFSFSLPLKE 453


>gi|323175873|gb|EFZ61467.1| TMAO reductase sytem sensor TorS [Escherichia coli 1180]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|309790274|ref|ZP_07684842.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227662|gb|EFO81322.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 908

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K++F+ ++S+ELR+PL  IIG++++L+     S ++     ++ I  +   LL L+
Sbjct: 529 ASRAKSAFLANMSHELRTPLNAIIGYSEMLQDDLSESDHTALVPDIQKIHHAGRHLLGLI 588

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILD++ ++AG M+L+     L  L+  V  ++      N+ R+ +     LG   AD 
Sbjct: 589 NDILDISKIEAGKMELHPEQFSLVSLVENVINTVDPLAASNHNRLVLECAADLGMMAADL 648

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKS 737
            +L QI   +LSNA  F+  G  V L+  R        +G  +F + + G  + E+    
Sbjct: 649 AKLRQILVNLLSNACKFTQHGQ-VTLRVQRLRSETDPQSGTVVFEIADTGIGMSEEQIAR 707

Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           +F  F S A     R   G GLGL+I   F  + GG + + S
Sbjct: 708 IFQPF-SQADTSMTRKYGGSGLGLAISHHFCQMMGGTIRVQS 748


>gi|300819426|ref|ZP_07099623.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1]
 gi|331667386|ref|ZP_08368250.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271]
 gi|300528022|gb|EFK49084.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1]
 gi|331064971|gb|EGI36866.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|299148168|ref|ZP_07041230.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
 gi|298512929|gb|EFI36816.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
          Length = 1365

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592
            +L FV      RA+  +  + E +   K +EI   K  F  ++S+ELR+PL+ I+    +
Sbjct: 802  LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 861

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  S L     +Q   ++Y+  +   LL++VN +LD    +AG M ++ + + + +LL 
Sbjct: 862  LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVNVEELLQ 919

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +          +  I   + SD +   F ADR  +  I   +LSNA  F+  G ++ L  
Sbjct: 920  DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 979

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +   + F+V+++G  +  +    +F RF      GQR+G G+GLS+V+  +  H G +
Sbjct: 980  WTEGDTYGFTVRDSGIGMSPEQLTRIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1037

Query: 773  SISSSDEGVTTINCRIPS 790
            +++S     T     +P+
Sbjct: 1038 TVASEPAQYTEFKVTLPA 1055


>gi|120435203|ref|YP_860889.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
 gi|117577353|emb|CAL65822.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
          Length = 1202

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 13/221 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PL  IIGFTDLL  S+L    + Q +Y++ I  S+  L++++ND+LD +
Sbjct: 691 FLANMSHEIRTPLNGIIGFTDLLMRSEL---ENSQQKYMQTIYNSAISLMDIINDVLDFS 747

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            ++AG ++L+     L +L ++    +  + H+  + + +    KL  +V AD  RL QI
Sbjct: 748 KIEAGKLELSEERTDLIELCDQTIDIVKHQAHKKGLEVLLNISPKLRRYVYADAVRLRQI 807

Query: 691 FSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            + +L N++ F+ +G      S+  +        FIFS+++ G  I     K +F+ F  
Sbjct: 808 LTNLLGNSVKFTHEGEIELNISSKTISGNEHELLFIFSIRDTGIGIAPQNLKKIFSAFDQ 867

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
                 R+  G GLGL+I    +NL    + ++S  +EG T
Sbjct: 868 EDASTTRKYGGSGLGLTISNKLLNLMDSKLELTSVLNEGST 908


>gi|254227634|ref|ZP_04921065.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395682|ref|YP_003287535.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio sp. Ex25]
 gi|151939676|gb|EDN58503.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339276|gb|ACY53070.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio sp. Ex25]
          Length = 873

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 167/352 (47%), Gaps = 24/352 (6%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRL--SPGTHIRNIAATCSRYYNE 493
            E  +H  + + +  PDG I   NPAF  L + T E  +  SPG  ++           +
Sbjct: 242 AEVAEHARDTIIITHPDGTIAWVNPAFEQLTEYTLEEVIGKSPGELLQGPD-------TD 294

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFV----NVTDS 548
            +   L +  +      R  +    +      +E  + P+ +    +L F+    ++TD 
Sbjct: 295 PNTVALLSKSVRKHSPIRVEILNYTKSKHPYWVELELSPVFDEDGGLLRFIAVERDITDR 354

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS- 607
            R ER L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L    L + N ++  
Sbjct: 355 RRMERRLSSALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEIL----LENENRREPR 410

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  +  S+  L+ ++NDILD + V+AG + L         L+       A +  + N+
Sbjct: 411 ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDFRSLVESCTALCAYQADKKNL 470

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++ V     + +  V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FSV + 
Sbjct: 471 KLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESEHGFDFSVSDT 529

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S
Sbjct: 530 GIGIPEDRLAHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHS 581


>gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1092

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    E+ R+A  +K+ F+ ++S+E+R+P+  ++G T+LL  S    L  +Q      +
Sbjct: 580 ALALALESARQATRLKSQFLANMSHEIRTPMNGVLGMTELLVQS---GLTEEQRSLALSV 636

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + S   LL ++NDILD + +++G ++L  +       +  V + +A   H  N+ +    
Sbjct: 637 TQSGEHLLAIINDILDFSKIESGKLELEATPFDPTATIEAVIELMAPTAHIKNLELTYWI 696

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSS 729
             ++ + V  D  RL Q+   +L NA+ F+++G   I     AA D      SV + G  
Sbjct: 697 AAEMPARVRGDAARLRQVLLNLLGNALKFTAEGEIAIQATFDAAADR--LRVSVADTGIG 754

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           IPE     +F  F    +   RR  G GLGL+I +S + L  G + I S
Sbjct: 755 IPEAAIPHLFAAFTQADNSTTRRFGGTGLGLTIAKSIVELMDGEIGIES 803


>gi|186682409|ref|YP_001865605.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186464861|gb|ACC80662.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1080

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 114/227 (50%), Gaps = 5/227 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K+ F+  +S+ELR+PL  I+G+  LL++  + S   K  Q +  I  ++   + LV 
Sbjct: 712 NRMKDEFLAVLSHELRTPLNPILGWAKLLQSPLVSS--DKLQQGLSAIERNAKQQVQLVE 769

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD++ +  G + L++  I L++ +    +++        I+++V+ D  +G    D  
Sbjct: 770 DLLDISRIIRGKLTLSFGAIDLSEPIAAALETVRLAAEAKAIQLEVLLDPSVGQVRGDAD 829

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q+   +LSNA+ F+S G  V ++    +      V + G  I  +    VF  F   
Sbjct: 830 RLQQVVWNLLSNAIKFNSTGGWVTVQLTSVDRHAQIQVSDTGKGIQPEFLPHVFELFQQQ 889

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                R   G+GLGL+I    +  HGG ++  S+ EG+  T   ++P
Sbjct: 890 DSSSTRSFGGLGLGLAIARQVVEAHGGTITAVSAGEGLGATFTVQLP 936


>gi|313606642|gb|EFR83405.1| heme sensor protein HssS [Listeria monocytogenes FSL F2-208]
          Length = 459

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620
           L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  +S  +T L
Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTGKEQAEYLTVLSEETTRL 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +L   +L LA++D          + L +   ++ Q       E  + I +  D    ++
Sbjct: 289 SSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINL--DLAEVNY 346

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D + L Q++S +L+NA+ F+  G  + +    +  +    V+++G  I +     +F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPPGGNIQIHLYEEGTNVFVEVRDSGVGISKSDMAKIFE 406

Query: 741 RFV-SNAHRGQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  +N  R +  G  GLGLSI +  I LH G +++ SS E  TT   ++P
Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLP 457


>gi|308126034|ref|ZP_05778782.2| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|308114726|gb|EFO52266.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 780

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+   L  +Q ++
Sbjct: 261 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 317

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 318 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 377

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    DF   I  V++
Sbjct: 378 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 437

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 438 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 496

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 497 STFTVSIHVP 506


>gi|295087809|emb|CBK69332.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 785

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 141/270 (52%), Gaps = 17/270 (6%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +   +  ++T+    E+ L +      ++D +K++F+ ++S+E+R+PL  
Sbjct: 383 ALVPMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ LL  ++      ++  Y   I+ +S ILL L+NDILDL+ ++AG   L Y    
Sbjct: 443 IVGFSQLLPAAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497

Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           +N  L EV ++I   +H+  ++  + ++ D +  +     D+ R++Q+ +  L+NA  F+
Sbjct: 498 MN--LGEVCRTIYA-VHKERVKEGVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFT 554

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             G  + L   R + +    VK+ G  I  +    +F RFV      Q  G GLGLSI +
Sbjct: 555 YAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICQ 611

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             I   GG + ++S     +T    IP +E
Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|294054668|ref|YP_003548326.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614001|gb|ADE54156.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1009

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 20/245 (8%)

Query: 555 LTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + E  EAL+ A +        K  F+  +S+E+R+P+  IIG+TDLL+ + L  L ++Q+
Sbjct: 603 IQENQEALQIARDRADAASVAKGEFLAMMSHEIRTPMNAIIGYTDLLRQTNLDELQAEQA 662

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
                I  S   LL L+N+ILD + +++  ++L  S + +  ++ E  + I  +  E  +
Sbjct: 663 SI---IKRSGKALLELINNILDYSKIESRTLELETSNVDVEQVVCEALEYILPQSKEKAL 719

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD---FI 720
           +I   IS+    ++  D  RL QI     +NA+ F+  GS  I   LK +  + D     
Sbjct: 720 KIDFEISETVNAAYWGDPHRLRQILMNFANNAVKFTDTGSIRIDVDLKHSESSPDTHALY 779

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS- 777
           F V + G  IPED    +F  F  V ++   Q  G GLGL I +  I    G V +SS  
Sbjct: 780 FRVTDTGCGIPEDKFDRLFKPFSQVDSSTTRQFGGTGLGLVISKRLIERMDGRVWVSSQV 839

Query: 778 DEGVT 782
            EG T
Sbjct: 840 GEGTT 844


>gi|325679572|ref|ZP_08159148.1| histidine kinase A domain protein [Ruminococcus albus 8]
 gi|324108729|gb|EGC02969.1| histidine kinase A domain protein [Ruminococcus albus 8]
          Length = 849

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 111/220 (50%), Gaps = 9/220 (4%)

Query: 559 NEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           NEA+    K++ +K   V +VS++L++PLT+II + DLLK S    L+ + S YV+ +  
Sbjct: 609 NEAVEERIKSERMKIELVANVSHDLKTPLTSIISYIDLLKKS---DLDDEASAYVQILDK 665

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  L ++V D+  LA   +GI  ++   +    L N+       K+ ++   +KV    
Sbjct: 666 KSQKLKSIVADVFSLAKATSGI-DVSMEELDFVMLFNQSLADADDKIKQSGKTVKVTVSE 724

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                V D  +L ++F  I+ NA+ +S  GS + L+  R   + +F+ KN  SS P D  
Sbjct: 725 DSAPIVGDGAKLYRVFQNIIDNALKYSMDGSRIFLEIGRVGKNIVFTAKNT-SSYPIDFT 783

Query: 736 -KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            + +  RFV         G GLGLSI +SF    GG   I
Sbjct: 784 PEEITERFVRGDSSRTDGGSGLGLSIAKSFTEACGGRFDI 823


>gi|283788151|ref|YP_003368016.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Citrobacter rodentium
           ICC168]
 gi|282951605|emb|CBG91305.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Citrobacter rodentium
           ICC168]
          Length = 778

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    V D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 VLEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS-SDEGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S +++G T 
Sbjct: 440 IGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKSMGGDITVASQTNKGSTF 499

Query: 783 TINCRIPS 790
           T+    P+
Sbjct: 500 TLTVHAPA 507


>gi|33601971|ref|NP_889531.1| virulence sensor protein [Bordetella bronchiseptica RB50]
 gi|34978360|sp|P26762|BVGS_BORBR RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33576409|emb|CAE33487.1| virulence sensor protein [Bordetella bronchiseptica RB50]
          Length = 1238

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  IIG  +L        
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQ 752

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +QS  V Y SA S  LL L+ DILD+A ++AG   L      L  L     +     
Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGL 810

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  V+   AR +G+  
Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAA 870

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              FSV + G  I E   + +F  F     +A  G   G GLGLSI    + L GG + +
Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930

Query: 775 SSSDEGVTTINC 786
            S+    TT++ 
Sbjct: 931 RSAPGVGTTVSV 942


>gi|270294242|ref|ZP_06200444.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275709|gb|EFA21569.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 508

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E   +A+ +K++F+ ++S+E+R+PL  I+GF+ +L +  +   ++K+  Y+  I 
Sbjct: 271 LLAAKEKAEEANRLKSAFLANMSHEIRTPLNAIVGFSSIL-SDYIQDEDTKE--YIHIIE 327

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++ +LL L+NDILDL+ ++AGI++     + +N  L+E+ Q++A     + + I+++  
Sbjct: 328 ENTQLLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDEM-QTMAKLKLPSEVSIRLLPG 386

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                     +R+ Q+ +  LSNA+  + +G   I           F V++ G  IP + 
Sbjct: 387 ADYCIIHTVPKRVRQVLNNYLSNALKHTEEGFIDIGYHLPQEDRIRFFVRDTGCGIPPEK 446

Query: 735 CKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            K VF RFV  N+    ++G GLGLSI         G V +SS
Sbjct: 447 QKDVFERFVKLNSF---KQGTGLGLSICTMIAEKMNGKVGVSS 486


>gi|253773977|ref|YP_003036808.1| hybrid sensory histidine kinase TorS [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253325021|gb|ACT29623.1| Hpt sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
          Length = 899

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 424 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 480

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 481 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 540

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 541 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 599

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 600 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 646


>gi|149914194|ref|ZP_01902725.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149811713|gb|EDM71546.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 482

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 3/223 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A EIK+ F+  +S+ELR+PLT+I    DL+ +  +  +       +E    +S  L  
Sbjct: 222 KRAYEIKSQFLSTMSHELRTPLTSIKFSLDLMNSGCVAQVPDDLKPILEIAVKNSNRLAE 281

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+ LDL  +++G M   + ++ ++ +++E   +I  + +   I ++            
Sbjct: 282 LINETLDLQKIESGEMIFRFQSLDISRVVSESVDAIMAQANAEQIEVRKEFPEDEVFING 341

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  R+ Q+   +LSNA+ FS  G  + ++  ++N     SV++ G+ IPE+    VF RF
Sbjct: 342 DEARIQQVLGNLLSNALKFSEAGGVITVRVEQNNDRVRVSVQDTGTGIPENCEAQVFGRF 401

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             V ++ R +  G GLG++I +  I  H G +   S   EG T
Sbjct: 402 SQVDSSDRRKVGGTGLGMNISKRIIERHNGTIHYKSRLGEGTT 444


>gi|153824523|ref|ZP_01977190.1| sensor protein TorS [Vibrio cholerae MZO-2]
 gi|149742077|gb|EDM56106.1| sensor protein TorS [Vibrio cholerae MZO-2]
          Length = 984

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +   I D     +  
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLALDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|81246095|gb|ABB66803.1| sensor protein torS [Shigella boydii Sb227]
 gi|320187205|gb|EFW61906.1| Sensor protein torS [Shigella flexneri CDC 796-83]
 gi|332093573|gb|EGI98631.1| TMAO reductase sytem sensor TorS [Shigella boydii 3594-74]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|193070789|ref|ZP_03051723.1| TMAO reductase system sensor TorS [Escherichia coli E110019]
 gi|192955900|gb|EDV86369.1| TMAO reductase system sensor TorS [Escherichia coli E110019]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|229151412|ref|ZP_04279615.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550]
 gi|228631955|gb|EEK88581.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550]
          Length = 448

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+   T+           I S+ +NG  + ++  + +F
Sbjct: 336 IKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELEYSVIISISDNGIGMEKEEMERIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 715

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 6/237 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T + EA   A+ IK+ F+  +S+ELR+PL  I+G++ LL+  KL    ++  Q +  I  
Sbjct: 324 TARAEA-ETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKLDP--TRTFQALATIER 380

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++T+ + L+ D+LD++ +  G + +N + + L  ++    +++        I++      
Sbjct: 381 NATLQVQLIEDLLDISRILQGKLVINITKVNLVTVILAALETMRLAAESKLIQVLTNFPP 440

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +G  + D  RL Q+   +LSNA+ F+  G  + +   +  G     V + G  I  +  
Sbjct: 441 NIGQVMGDSARLQQVVWNLLSNAVKFTPNGGKIEVTLDKMEGYAQIVVSDTGKGIQPEFL 500

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIP 789
             VF+ F        RR  G+GLGL+IV   + +HGG V+  S  +E   +   R+P
Sbjct: 501 PYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQSLGEEQGASFTVRLP 557


>gi|283851817|ref|ZP_06369094.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572733|gb|EFC20716.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 484

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 121/235 (51%), Gaps = 11/235 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ + ++  F+  VS+E+R+PLT+I    +L++   LG +N +Q ++++  S     + 
Sbjct: 248 LKEEERMRTDFIDMVSHEIRTPLTSIRESVNLMRERVLGEVNERQKRFLDIASDELQRIS 307

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++  +L ++++ + I+ L+ +T    +LL E  +         ++R+       + S +
Sbjct: 308 TMLTSLLKVSSMASQIVDLSPTTFNPEELLRETLEKAGPAAEAKDLRLTPRVGRDIVSVM 367

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            DR+ L Q    ++ NA+ FS    +V+  L+ A      +FS+ + G  IPE+    VF
Sbjct: 368 GDRELLGQALYNLIGNAVKFSPVERSVLVGLEMADGGQKLLFSITDEGPGIPEEEQSHVF 427

Query: 740 NRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +++    +RG R      G+GLGLSI  + +  HGG++ +SS      T    IP
Sbjct: 428 SKY----YRGARTKRTTDGIGLGLSIARTIVEAHGGNIWLSSLPGKGCTFYFTIP 478


>gi|191166564|ref|ZP_03028393.1| TMAO reductase system sensor TorS [Escherichia coli B7A]
 gi|190903369|gb|EDV63089.1| TMAO reductase system sensor TorS [Escherichia coli B7A]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|301309331|ref|ZP_07215273.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300832420|gb|EFK63048.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 666

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 134/229 (58%), Gaps = 5/229 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V+  + L    E  +++D++K++F+ ++S+E+R+PL  I+GF++L+ T    S   +++ 
Sbjct: 420 VKQNKELEVALEKAKESDQMKSAFLANMSHEIRTPLNAIVGFSNLMNTDIELSKEEREN- 478

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I+ +S +LLNL+NDILDL+ +++G M  ++    LN+L++ + Q+    M E N+ 
Sbjct: 479 FTELINTNSDLLLNLINDILDLSRIESGRMSFSFQQYSLNELISTIYQTFQVLMPE-NVE 537

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           +++    K  S   D+ RL Q+ +  LSNA+ F+ KG  +I    R+ G  +   V++ G
Sbjct: 538 LRMQIPEKSISIPTDKFRLTQVITNFLSNAIKFTQKGYILIGYEYREEGRHVHIFVEDTG 597

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP++   +VFNRF         +G GLGLSI +       G++++ S
Sbjct: 598 IGIPKEKQDAVFNRFTKLDEFA--KGTGLGLSICKVIAERFDGYIAVES 644


>gi|300823946|ref|ZP_07104069.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7]
 gi|300523578|gb|EFK44647.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|296503742|ref|YP_003665442.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296324794|gb|ADH07722.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 458

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +    +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDAIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 346 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELP 457


>gi|294666715|ref|ZP_06731951.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603540|gb|EFF46955.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 726

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 124/247 (50%), Gaps = 15/247 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I AS+  LL+LV ++LD++ ++AG ++++     L DL+  V   +  +     +     
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLRDLIGSVNMILQPQAKTRGLDYGTE 289

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
               +   +  D   L Q+   +L NA+ F+  G  V+L+ AR +G+        F V++
Sbjct: 290 VATDVPDLLKGDTGHLRQVLLNLLGNAVKFTEHGH-VLLRVARLSGNGADTVRLRFDVED 348

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG +  + +  G +
Sbjct: 349 SGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGAIGFAPNPSGGS 407

Query: 783 TINCRIP 789
                +P
Sbjct: 408 VFWFELP 414


>gi|326202278|ref|ZP_08192147.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987396|gb|EGD48223.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 700

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 128/247 (51%), Gaps = 12/247 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL----NSKQS 607
           ER L E  E     +++   F  ++S+EL++PL  I+G   +L       L        +
Sbjct: 429 ERVLNETIEY----NKLLTEFFSNISHELKTPLNVILGAIQILNLPHDFELPQPFEENLN 484

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   +  +   LL LVN+++DL+  D+G +KLN S   +  ++ E+  S+A  +    +
Sbjct: 485 KYHRVMKQNCYRLLRLVNNLIDLSKFDSGFLKLNLSNQNIVSVVEEITLSVADYVESRGL 544

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
            I   +D +      D  ++ +I   +LSN++ F+ K  ++++  + D G+ +  SV++ 
Sbjct: 545 SITFDTDCEEKIIAVDADKIERIILNLLSNSIKFTDKDGSILISIS-DKGEMVSISVRDT 603

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP+D  +++F RF  V       R G G+GLS+V++ + +HGG + ISS +   + +
Sbjct: 604 GIGIPKDKLETIFERFGQVDKTLTRNREGSGIGLSLVKTLVEMHGGVIKISSMEGKGSEV 663

Query: 785 NCRIPSK 791
              +P K
Sbjct: 664 YIELPVK 670


>gi|83309372|ref|YP_419636.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944213|dbj|BAE49077.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 537

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 8/241 (3%)

Query: 554 ALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           AL E  EAL R+ D I+ +F   V++E+++PLT++      ++T+       K+++ +  
Sbjct: 299 ALKEMTEALWRRMDAIE-AFAADVAHEIKNPLTSL---RSAVETAARIEDPDKRARLMSI 354

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           +      L  L++DI D + +DA + +     + L  +L+ + +       +  +R +V 
Sbjct: 355 VLDDVGRLDRLISDISDASHIDAEMSRAETGPVALAAMLDTLAEIYRGTCEDRGLRFEVE 414

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +G   +      RL+Q+   +++NA  FS  G  + L A RD G     V++ G  IP
Sbjct: 415 RPEGDALTVQGIESRLVQVLRNLIANAASFSPDGGLIRLAAHRDGGRIALVVEDQGPGIP 474

Query: 732 EDMCKSVFNRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +   ++F RF S    G++ G   GLGLSI    +  HGG +   + DEG       IP
Sbjct: 475 ANKLDAIFERFYSERPEGEKFGTHSGLGLSISRQIVEAHGGAIRAENRDEGGARFTVDIP 534

Query: 790 S 790
           +
Sbjct: 535 A 535


>gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1090

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 119/235 (50%), Gaps = 9/235 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + E+ L +  E    A + K+ F+ ++S+E+R+P+  +IGFT LL  +   +++
Sbjct: 689 DLTERKKVEQDLRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFTSLLLNT---NID 745

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S Q  Y+E I +S   LL +++DILD + ++ G+M+L    I L + L      +A    
Sbjct: 746 SVQRDYIETIHSSGDSLLKVISDILDFSKIEGGMMELEKERIDLIECLETSLNLVAEDAS 805

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDF 719
              + +    + ++  + + D  RL QI   +L NA+ F+ KG   +  +A    D  + 
Sbjct: 806 RKGLSVSYEVEPQVPRYLMGDMTRLRQILVNLLGNAVKFTDKGFVRLDVSALPVEDGHEI 865

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            F V ++G  I +D    +F  F        R+  G GLGL+I +    L GG +
Sbjct: 866 QFRVTDSGIGISQDRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHLAELMGGGI 920


>gi|323486665|ref|ZP_08091986.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum
           WAL-14163]
 gi|323400046|gb|EGA92423.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum
           WAL-14163]
          Length = 1207

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 126/253 (49%), Gaps = 14/253 (5%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNE----ALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +  +T  +VTD  R E+   E+      A  +A+  K+ F+  +S+E+R+P+  IIG T
Sbjct: 641 GRVCITRTDVTDVARREQRQKEELASALIAAEQANAAKSDFLSRMSHEIRTPMNAIIGMT 700

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             +    LG+ + + +  +  I  SS  LL+L+NDILD++ +++G M L    I   + L
Sbjct: 701 -AIAAQALGN-DEQVADCISKIGISSRFLLSLINDILDMSRIESGKMLLKNDKIPTEEFL 758

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           N +     ++    ++  + I D  L   ++ D  +L Q+   IL NA+ F+ +G  V  
Sbjct: 759 NGINSICYSQAAVKDVEYECIVDPVLDDYYIGDAMKLQQVLINILGNAIKFTREGGKVTF 818

Query: 711 KAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVES 763
            AA     +++    F + + G  + ED    +F+ F   S        G GLGL+I +S
Sbjct: 819 SAAVKRKMKNDAVIRFVINDTGIGMDEDYLPHIFDPFSQESTGTTSLYGGTGLGLAISKS 878

Query: 764 FINLHGGHVSISS 776
            ++L  G +++ S
Sbjct: 879 IVDLMDGKITVRS 891


>gi|317154224|ref|YP_004122272.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944475|gb|ADU63526.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 881

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 184/421 (43%), Gaps = 60/421 (14%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           DLE +         + ID +SEG  ++    R+ ++N   + +    E    PG  +  I
Sbjct: 269 DLEGRAAMASDRLVDAIDSISEGFLLYDNKERLIIANRRAKEVAGCGEGFFKPGLTVEQI 328

Query: 484 AATCSRYYNESDGWDLFAAIITSFD---DERKSLQGTL-----ELLSD-SVLEYSIIPLP 534
               SR   ES    LF + +   D   +ER     T+     ELLSD S ++       
Sbjct: 329 ----SRLGAESG---LFVSALGREDAWVEERLKCHRTISPPVEELLSDGSWVQVKTYRSG 381

Query: 535 NAQTMLTFVNVTDSVR-AE-----------------RALTEKNEALRKA-------DEIK 569
             +T++ F +VT+  R AE                 + L EK   LR+A       DE+K
Sbjct: 382 RGETVVVFTDVTERKRKAEVLATMNSDLEDLVRERTKVLVEKAMELRQANRRLMELDELK 441

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLK------------TSKLGSLNSKQSQYVEYISASS 617
           ++F+  VS+ELR+PLT+++GF+ +++            T++   L  +    ++ I +  
Sbjct: 442 SAFLSSVSHELRTPLTSLLGFSKIIRRDFTRTFMHLADTAQAQRLGERIQSNLDIIGSEG 501

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-ENNIRIKVISDGK 676
             L  L+ND+LDL+ +++G     ++ I L   +N    + +  +  +  +R+ +     
Sbjct: 502 ERLTRLINDVLDLSRIESGQEDWRFTEIDLAGCVNRAVSAASGLLSPKPQVRLTIRRMDP 561

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    AD+ R+ Q+   +LSNA+ F+  G   +     D G     V++ G  I     +
Sbjct: 562 VPLVHADQDRIHQVLMNLLSNAVKFTDFGEVAVDLYLDDQGMARIRVEDTGRGIKARYLE 621

Query: 737 SVFNRFVSNAHRG-----QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F++F    HRG     +  G GLGL+I    +  + G +   S     T +N  +P  
Sbjct: 622 QIFDKF-HQVHRGDTLTEKPAGTGLGLAISRQIVEHYHGRIWAESKLGRGTVMNVALPPA 680

Query: 792 E 792
           +
Sbjct: 681 D 681


>gi|300920962|ref|ZP_07137352.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1]
 gi|300412082|gb|EFJ95392.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|300118415|ref|ZP_07056161.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298724200|gb|EFI64896.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 263

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           ++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  +
Sbjct: 36  SIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKRM 93

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    + 
Sbjct: 94  SSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDITI 151

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D   L Q++S I +N++ FS+   T+           I S+ +NG  + ++    +F+
Sbjct: 152 KGDENLLHQVWSNIFTNSIKFSNDDGTIEFFVEELESSVIISISDNGIGMEKEEMDRIFD 211

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 212 RFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 262


>gi|261250696|ref|ZP_05943270.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260937569|gb|EEX93557.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 709

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 16/249 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S+R E A  +  E+ R     K  F+ ++S+E+R+PL  +IG    L   +    + KQ+
Sbjct: 222 SIRLEEAKQQAEESARA----KARFLANMSHEMRTPLNAVIG----LSQKEYYQASDKQT 273

Query: 608 Q-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + ++  I++S   LL L+N +LDL+ ++ G + L      L+DL+N  K +I  +M +  
Sbjct: 274 KDFISMINSSGQHLLKLINSVLDLSKIEQGKVVLEKEQFYLSDLINSCK-NIFVEMSKPE 332

Query: 667 IRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFS 722
           + +   SD  K     ADR +LLQ+ + +  NA+ F+S G   I       GD    + +
Sbjct: 333 VDVFFRSDLEKDFKLFADRTKLLQVVNNLSYNAVKFTSHGHVDICSDVTHVGDQCYLVMT 392

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G  + ++    VFN F        R+  G GLGLSI +S ++L  G +S+ S  E 
Sbjct: 393 ITDTGIGMNQEQIVKVFNEFTQADESITRQYGGTGLGLSICQSLVDLMNGTISVESELEK 452

Query: 781 VTTINCRIP 789
            T     +P
Sbjct: 453 GTCFTVSMP 461


>gi|260449861|gb|ACX40283.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
          Length = 899

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 424 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 480

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 481 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 540

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 541 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 599

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 600 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 646


>gi|253689753|ref|YP_003018943.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756331|gb|ACT14407.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 931

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     LN+ Q+ Y+  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L++ L++V   +A   HE  + + + I +     F
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNALDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + +L NA+ F+ +G+  I    R            +++ G  I E    
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504


>gi|39729|emb|CAA37124.1| bvgS product, put. sensor protein [Bordetella parapertussis]
          Length = 1238

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  IIG  +L        
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQ 752

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +QS  V Y SA S  LL L+ DILD+A ++AG   L      L  L     +     
Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGL 810

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  V+   AR +G+  
Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAA 870

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              FSV + G  I E   + +F  F     +A  G   G GLGLSI    + L GG + +
Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930

Query: 775 SSSDEGVTTINC 786
            S+    TT++ 
Sbjct: 931 RSAPGVGTTVSV 942


>gi|312890606|ref|ZP_07750141.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311296905|gb|EFQ74039.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1472

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L ++ +  ++  E+K +F  ++S+ELR+PLT I+   + L + +   L+ +  +Y+E I 
Sbjct: 935  LRQRIQVEQELTELKLNFFTNISHELRTPLTLIMSPVEALLSKE--DLSERGRRYIEIIK 992

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +   V+ +LDL  V  G  +LN S + L  L+++V         E NIR  ++ D
Sbjct: 993  RNTERMERFVSQLLDLRKVQTGNAQLNISRVSLVSLIDKVAGYFTEAFREKNIRFSIVPD 1052

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFI-FSVKNNGSSIPE 732
              +    AD +++  +F  IL+NA+ +S +   + +    ++NG     ++++ G  + E
Sbjct: 1053 NLVLEICADPEKMETVFYNILANALKYSPQDGVIEISVNFKENGSVCAIAIRDEGPGVDE 1112

Query: 733  DMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                 +F  +        GQ +G G+GLS+   F+ LHGG +   +S
Sbjct: 1113 TQLTDIFRLYYEGQIGGAGQLKGTGIGLSVSSEFVRLHGGKIYAENS 1159


>gi|307824966|ref|ZP_07655188.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307734013|gb|EFO04868.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1759

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 9/218 (4%)

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            + F+  +S+ELR+PL  I+G+  +L     G  N +QS  +  I  S   LLNL+NDILD
Sbjct: 1291 SEFMARMSHELRTPLNGILGYAQILLGESRG--NERQSAMLNVIQQSGEYLLNLINDILD 1348

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRL 687
             A ++AG  +L+ S I L   L  +   I  K  +  +     + +D   G   AD  RL
Sbjct: 1349 FAKIEAGKQELSLSDIQLPSFLRNLASIITIKAEQKALVFVCDIAADVPAG-IRADETRL 1407

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             Q+   +LSNA+ +S +G   +     + G   F V+++G  I      ++F  F   A 
Sbjct: 1408 RQVLLNLLSNAIKYSERGQISLKVTVLEPGRLRFEVQDSGLGIDTGQLDTIFQAF-EQAG 1466

Query: 748  RGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
              Q R  G GLGL I    + +    + ++S  DEG T
Sbjct: 1467 DWQHRTGGTGLGLPISRELVRMMDSDIHVTSRVDEGST 1504


>gi|301327172|ref|ZP_07220438.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1]
 gi|300846205|gb|EFK73965.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|316935933|ref|YP_004110915.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315603647|gb|ADU46182.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 873

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 19/247 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  RAE+A  E        +  K+SF+  +S+E+R+P+  ++G  + L  +KL   +
Sbjct: 355 DVTERWRAEQAEAE--------NRAKSSFLAMMSHEIRTPMNGVLGLANSLLETKL---D 403

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q Q V  I  S   LL ++NDILDL+ ++AG ++   +      L+  V+  I  ++ 
Sbjct: 404 AEQQQAVTTIRDSGDDLLRILNDILDLSKLEAGRLEFEQADFSPATLVESVRAIIEPEIR 463

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720
              I +K+  D +L  S   D  R+ Q+   + SNA+ F+ +GS  ++L   + N     
Sbjct: 464 GKGIELKIDIDPRLPPSLSGDAARIRQVLLNLASNAVKFTERGSIAIVLTCVKRNDSHAT 523

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             + V + G  I  D   S+F  F        RR  G GLGL+I    +   GG ++++S
Sbjct: 524 VEWQVTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTS 583

Query: 777 SD-EGVT 782
            + EG T
Sbjct: 584 REGEGST 590


>gi|256378110|ref|YP_003101770.1| histidine kinase [Actinosynnema mirum DSM 43827]
 gi|255922413|gb|ACU37924.1| histidine kinase [Actinosynnema mirum DSM 43827]
          Length = 594

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 15/235 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E LRKA       V   ++ELR+PL+NI G+   L+ ++ G +  +  + +  +   +  
Sbjct: 368 EGLRKA------AVSDTAHELRTPLSNIRGW---LEAAEDG-VTDRDPELIALLLKEALA 417

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L ++V+D+ DLA  DAG ++L  S   L  +L+ ++ +  T      I +   +   L +
Sbjct: 418 LQHIVDDLQDLAVADAGGLRLTVSPQPLTTVLDRLRAAHETTATRAGITLTTSAPDTL-T 476

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738
             AD  RL Q+   +++NA+     G  V + A RD  + + +V + G+ I PED+   V
Sbjct: 477 AEADPVRLRQVLDNLVANAVRHVPPGGRVEVTAERDGDEAVITVTDTGTGITPEDL-PHV 535

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+RF        RR  G GLGL+IV   +  HGG VS +S     +    R+P+ 
Sbjct: 536 FDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVSATSEPGAGSIFTVRLPAP 590


>gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
          Length = 949

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 14/264 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T V++T    AE  L +  E    A+  K+ F+ ++S E+R+P+  I GF +LL+   
Sbjct: 297 ICTAVDITKQRSAEAQLYKAKEEAEAANIAKSKFLANMSREIRTPMNGIFGFLELLE--- 353

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L +L+S+Q +++    ++S +LL+++NDILDL+ ++A  + +   +  L D + +    +
Sbjct: 354 LTNLSSEQKEFIREAKSASEVLLHIINDILDLSKIEARKLIMENISFNLRDAIEDTVSLL 413

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
           A K  E  + + V I +      + D  RL QI + ++ NA+ F+ KG   I    L+  
Sbjct: 414 APKAAEKGLELYVRIKEDVPEEVIGDPSRLRQILNNLIYNAVKFTEKGYVSISMDYLEKD 473

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            +     F V++ G  I  +    VF  F        R+  G GLGL I    I + GG 
Sbjct: 474 HEIALVNFEVEDTGIGIATEDIPKVFEAFNQADASTTRKYGGTGLGLPISYELIKMMGGD 533

Query: 772 VSISSS-DEGVT---TINCRIPSK 791
           + + S   EG T    +N +I  +
Sbjct: 534 IRVESKLGEGSTFKFNVNLKIAKR 557


>gi|229059565|ref|ZP_04196946.1| hypothetical protein bcere0026_16770 [Bacillus cereus AH603]
 gi|228719769|gb|EEL71364.1| hypothetical protein bcere0026_16770 [Bacillus cereus AH603]
          Length = 334

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 150/292 (51%), Gaps = 16/292 (5%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           FA +  +       +  +L+ +S+  LE  I+   N +      NV    R  ++L E  
Sbjct: 44  FAFMTKTMMKRLSEINKSLKEISNGNLEIHILISKNDEIGELAANVN---RMAKSLKESI 100

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  ++L S   +  QYV  +   S  
Sbjct: 101 ENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNQLHSNREECEQYVSILKRKSYE 159

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L N V+D+L+   ++   ++L+ S + +   + ++      ++ + ++   +  D K+  
Sbjct: 160 LKNQVDDLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPQLDDADMSFCIKGD-KVLH 218

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  IP +    VF
Sbjct: 219 VEMDVAVMVRLFENVISNSIMYGKDGKELLIQVSKRDMNVEIEIKNFGQCIPNENLPYVF 278

Query: 740 NRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
            +F    +RG++       G G+GL+I  S   LH G +++ S+D E V TI
Sbjct: 279 EKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNDKETVFTI 326


>gi|227820615|ref|YP_002824585.1| sensor protein [Sinorhizobium fredii NGR234]
 gi|227339614|gb|ACP23832.1| sensor protein [Sinorhizobium fredii NGR234]
          Length = 755

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 6/251 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  +A R   E      +A + K+  +  V++E+R+PL+ I+G + LL  ++   L+
Sbjct: 217 DVTEEAQAVRRGEEARLRAEEASQAKSRLLATVTHEIRTPLSGILGMSHLLAQTQ---LS 273

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q  Y+  +  S   L+ LV D++D +++ AG  +L+ S   L  ++  V + ++ + H
Sbjct: 274 AEQRNYLADMQQSGHALVQLVEDLIDFSSLSAGRFQLHPSEQELRLVIENVVEMLSHRAH 333

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           E  I I V  D  +   F  D  RL Q+   ++ NA+ F+  G  V++ A    G     
Sbjct: 334 EKGIEIGVAIDASVPPRFGFDAARLRQVLFNVIGNAVKFTEAGG-VLVTADYGEGHVRIR 392

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V ++G  +  D    VF  F       QR +G GLGL+I    +   GG +  SS     
Sbjct: 393 VDDSGPGMSADELARVFEEFEQAGDHAQRSKGTGLGLAISRRIMEAFGGSLIASSVTGEG 452

Query: 782 TTINCRIPSKE 792
           +    R P  E
Sbjct: 453 SRFEIRFPVDE 463


>gi|150388839|ref|YP_001318888.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149948701|gb|ABR47229.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 583

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 13/251 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTS 597
           F+N+T+       L EK       ++++  F  ++S+ELR+PL  I+G   L    + + 
Sbjct: 300 FINITERKIIRNELNEK----MHFEKLRTDFFSNISHELRTPLNVILGSLQLQGLYIASE 355

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  + S+  + +  +S  LL LVN+I+D+  +D+G   +N     +N L+ E+  S
Sbjct: 356 NTSKYKKEYSKANKRMKQNSYRLLRLVNNIIDITKIDSGFYDINLENYDINMLIREIVLS 415

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +   +    ++I+  ++        D +++ +I   +LSNA+ F+  G  +++       
Sbjct: 416 VEDYIENAGLQIEFKANTNQAIIACDPEKIERIMLNLLSNAIKFTEAGGKIVVTVKMVQN 475

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               SV++ G  IP++   SVF RF    S +HR +  G G+GLS+V   I  H G V++
Sbjct: 476 RIFMSVRDTGIGIPQEKINSVFERFKQVGSYSHR-KNEGSGIGLSLVRLLIEAHKGKVTV 534

Query: 775 SSS-DEGVTTI 784
            S  +EG   I
Sbjct: 535 RSKLNEGTEFI 545


>gi|300925320|ref|ZP_07141210.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1]
 gi|300418542|gb|EFK01853.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1]
          Length = 904

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEG-YIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|294643491|ref|ZP_06721301.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292641170|gb|EFF59378.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 479

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P+  I+    LL+  ++G+LN +Q Q  + I  +S  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG ++L        +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 311 SITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   V++ A +D       V++ G  I     KS+F+
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGIDPRYHKSIFD 430

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 431 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 465


>gi|238761632|ref|ZP_04622607.1| Signal transduction histidine-protein kinase barA [Yersinia
           kristensenii ATCC 33638]
 gi|238700146|gb|EEP92888.1| Signal transduction histidine-protein kinase barA [Yersinia
           kristensenii ATCC 33638]
          Length = 891

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 13/229 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 257 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 312

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + +++      
Sbjct: 313 CIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQV 372

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+  IL A +         +  + + G  I E    
Sbjct: 373 IGDAMRLQQIVTNLLGNAIKFTEQGNIDILVATQAKTPQQVTLVVEIHDTGIGISESQQA 432

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            +F  F        RR  G GLGL I E  +   GG +S  S  D G T
Sbjct: 433 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGST 481


>gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 603

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 161/334 (48%), Gaps = 23/334 (6%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           GR  L +P F +L       L   T  +      +R +++SD   +      S++++   
Sbjct: 265 GRYLLVSPTFENLVGKRSVELVGKTDAQIFGVEDARRFSDSDNQLIQEQQPRSYEEKLTF 324

Query: 514 LQGTLEL-LSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADE 567
             G+ +  LS+        PL +    L  +     ++T+  R ++ L    EA      
Sbjct: 325 HDGSQKYYLSEK------FPLRDEDGHLIAIAGVSTDITELHRYQQELERAKEAAEAGTR 378

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+ ++S+E+R+P+ +I+G ++LL  ++L   +  Q Q+V  ++ +S+ LLNL+NDI
Sbjct: 379 AKSEFLANMSHEIRTPMNSIMGMSELLLDTEL---SPDQRQFVTILTRASSSLLNLINDI 435

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LDL+ +++G+M +      + + +    + +  +  E  + +K+  D ++    + D  R
Sbjct: 436 LDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAVEKKLDLKLEIDPQVPEKILGDATR 495

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRFVS 744
             Q+   ++ N + F++ G   V LK    NG  ++  VK+ G  +  +  + +F RF  
Sbjct: 496 FQQVLINLIGNGLKFTTHGEVRVQLKV---NGHQLWVGVKDTGIGMAPEQMQGLFTRFSQ 552

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                 RR  G GLGLSI +  +   GG + ++S
Sbjct: 553 GDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTS 586


>gi|304399231|ref|ZP_07381098.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304353285|gb|EFM17665.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 909

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  ++GFT  +LKT     L + Q  Y++ I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQ----LRTTQRDYMQTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +++ND+LD + ++AG + L      L   L+E    +A   H+  + + V+ D  +  + 
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI   ++ NA+ F+ KG   +    R       +    V+++G  I E    
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVGQRVITQSRVELEIQVEDSGIGISEQQQT 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEG 780
            +F  F        RR  G GLGL I +  +   GG ++ SS  D+G
Sbjct: 463 QMFQAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQG 509


>gi|298247995|ref|ZP_06971800.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550654|gb|EFH84520.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 853

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 119/237 (50%), Gaps = 9/237 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISAS 616
           N A ++ ++ K+ F+   S+ELR+PLT +   T LL  + +K G   S  +  +  +   
Sbjct: 620 NSARKELEQRKDDFISMASHELRNPLTALKLHTTLLHRQLAKQGLQGSAPA--LSSMETQ 677

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              +  LV ++LD++ + AG ++  + T+ L+ LL E+  ++      + I   ++    
Sbjct: 678 INKVTRLVEELLDVSKIQAGRLEYVWETVDLDALLREITDTVQQTHPSHRI---LVRGAV 734

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             S +ADR RL Q+F+ +LSNA+ +S     V +  +         V+++G  IP +   
Sbjct: 735 QTSLMADRDRLGQVFTNLLSNAVKYSPSAEAVEMDLSTSAETVTIRVQDHGLGIPREKRD 794

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F+RF   A   Q+   G+G+GL IV   +  +GG +++ S     +T    +P K
Sbjct: 795 KIFDRFYRVADPRQKAIPGLGMGLYIVAEIVKHYGGTITVESEPGKGSTFQVMLPRK 851


>gi|307154213|ref|YP_003889597.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306984441|gb|ADN16322.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 681

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 125/257 (48%), Gaps = 10/257 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + M    ++T+  R E+ +    E  ++ +E+K  FV   S+E R+PL  I+   +L++ 
Sbjct: 403 EVMAIVRDITERKRVEQDIRHALEKEKQLNELKTRFVTMTSHEFRTPLAIILSSAELIEH 462

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLN 652
                   K+  +++ I  +   +  L+ND+L L   +AG ++   + I L      L+ 
Sbjct: 463 YAHKLDEKKKMTHLQRIQTAVKHMTGLLNDVLVLGKAEAGKIEFMPTPISLAQFCRQLVE 522

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV+ + +T        I   +  +  +   D+Q L  I + +L+NA+ +S + S V    
Sbjct: 523 EVQLTTSTHT------IVFCAHNQCPNGCLDQQLLRHILTNLLTNAIKYSPESSLVQFDL 576

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             ++   IF +++ G  IP +    +FN F   ++ G   G GLGLSIV+  ++LHGG +
Sbjct: 577 ICESQKVIFRIQDQGIGIPANEQPELFNSFFRASNVGSISGTGLGLSIVKKAVDLHGGQI 636

Query: 773 SISSSDEGVTTINCRIP 789
            + S     TT   ++P
Sbjct: 637 EVESRLGEGTTFTVKLP 653


>gi|108758513|ref|YP_628610.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108462393|gb|ABF87578.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 698

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 126/259 (48%), Gaps = 11/259 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLL 594
           A  +L  V VTDSV A    +E  + ++   + +   +  VS++LR+PL  I +  + +L
Sbjct: 425 AAVILFAVEVTDSVLARHKESELAQQMKARADFERQLIGIVSHDLRNPLGAISLAVSMML 484

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNE 653
           +    G L+ +Q++  + I +S+     ++ D+LD      G  + +    + L++++  
Sbjct: 485 QR---GLLDERQARQAQRIRSSADRATRMIRDLLDFTRARQGTGLPVYPQPMDLHEVVRT 541

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           V   +     + ++  +   DG +G++  D  RL Q+   ++ NA+ +S  G+ V + + 
Sbjct: 542 VLDEVHAGWPDRHLETERTGDG-VGTW--DPDRLAQLIGNLVGNALQYSPPGTPVRVTSR 598

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGG 770
            D+   +  V N G +IP +    +F        R +   RR +GLGL IV S +  HGG
Sbjct: 599 GDDDGVVLEVHNLGPAIPLERQPRIFEPLERATVRPEDQGRRSIGLGLYIVRSIVLAHGG 658

Query: 771 HVSISSSDEGVTTINCRIP 789
            V   S +E  TT   R+P
Sbjct: 659 TVEARSQEETGTTFTVRLP 677


>gi|83647950|ref|YP_436385.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635993|gb|ABC31960.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 758

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 128/239 (53%), Gaps = 11/239 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R+  E+++A+ KA++ K+ F+ ++S+ELR+P+ NI+G+T LL  +    ++ +Q +Y+ 
Sbjct: 220 QRSQVERSQAV-KANQSKSVFIANISHELRTPMNNILGYTGLLLDTP---VSQEQREYLL 275

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  SS  LL L ND+LDL+ ++AG  +++ +   L  LL      ++T      + ++ 
Sbjct: 276 AVQQSSESLLTLFNDMLDLSKLEAGTTQVDLAPTELRALLQAAVARVSTVSEAKGLNVET 335

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             D  L + V  DR  LL++   +LS A+  + KG  V+    +    D     F+V+++
Sbjct: 336 FVDAGLPTRVLTDRNILLRVLESLLSVAITVTVKGQVVLHVHPVAFDEDRVRIRFTVEDS 395

Query: 727 GSSI-PEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
              I P ++   + N F +   +G    G GL L++ + F+ L GG   I S +   TT
Sbjct: 396 SPGISPNEIDTLLSNTFEAPVSQGLNEVGTGLRLALCKQFVELMGGSFGIESEEGKGTT 454


>gi|325921523|ref|ZP_08183376.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            gardneri ATCC 19865]
 gi|325547993|gb|EGD18994.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            gardneri ATCC 19865]
          Length = 1193

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 17/239 (7%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A + K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 794  MRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 850

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I ++   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 851  GYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLIRQVAELVRPTAEQKQL 910

Query: 668  RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSV 723
              +  + D    +   D  R+ QI   +L NA+ F+ +GS  +  +    G        V
Sbjct: 911  VFECELEDALPPALHGDASRVQQILLNLLFNAVKFTERGSVSLRVSVLPQGHKQGIRMEV 970

Query: 724  KNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V++SS
Sbjct: 971  RDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGEVTVSS 1026


>gi|153211921|ref|ZP_01947768.1| sensor protein TorS [Vibrio cholerae 1587]
 gi|124116997|gb|EAY35817.1| sensor protein TorS [Vibrio cholerae 1587]
          Length = 984

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|167647655|ref|YP_001685318.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167350085|gb|ABZ72820.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 602

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 14/232 (6%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ +K  F++ +S+E+R+PL  ++G    ++     +L+++Q   +  I  S   LL+++
Sbjct: 219 ANRVKTEFLETMSHEIRTPLNGVLGMAQAMERD---TLSARQRTRLAMIQDSGATLLDVI 275

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           N +LD++ ++AG M++  +   L+ L + ++Q      H+  +   + ++    G    D
Sbjct: 276 NAVLDISRIEAGKMEIVRAPFRLDALTDTLRQLYGGLAHDKGLDFSLEVATETAGWRDGD 335

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFN 740
             RL Q+ S ++SNA+ F+  G   +    R +GD      +V + G  +PE     +F 
Sbjct: 336 VARLRQVLSNLISNAIKFTDAGGVTV----RIDGDVRGVNCTVSDTGVGVPEGRRAQIFE 391

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVTTINCRIP 789
           +FV       RR  G GLGL+I    + L GG +  I +S+ G      +IP
Sbjct: 392 KFVQVDSSSTRRTGGSGLGLAICRELVTLMGGRIDFIDTSEAGGACFTFQIP 443


>gi|256831176|ref|YP_003159904.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256580352|gb|ACU91488.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 878

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 122/501 (24%), Positives = 215/501 (42%), Gaps = 83/501 (16%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL  L V IAI  Q+R ++  N +   L +I+  +            F R        + 
Sbjct: 270 ILEALPVGIAILGQDRIIRRVNLAATNLLDIEPGWF-----------FER-------HVP 311

Query: 371 WKTWKENIFSVYKSSET-----HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV-- 423
           W  + EN+ S     +      H+       G+TL VI +S P    I   E L ++V  
Sbjct: 312 WDMFYENVQSDDPERQPRIEFEHEVRMRALEGRTLDVIKSSIP---VILQGETLILEVFM 368

Query: 424 DLETKYNTLVKVQGET------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           D+  +     ++  E       +  ++EGVA+    G +   N +   +   + + L  G
Sbjct: 369 DVTQRKQAERELLQEKSRLESLLSGINEGVALTDERGGVLEVNESLCRILGAKAHDLL-G 427

Query: 478 THIRNIAATCSRYYNESDGWDLFAAII--TSFDDERKSLQGT---------LELLSDSVL 526
             +                WDLF   I  T      ++LQ           LE   D  L
Sbjct: 428 RKV----------------WDLFPDGILGTQLAQGLRALQENPRTRLREIQLESFRDMAL 471

Query: 527 EYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              + P+   +     +++ + VT  V A R    + EA   A + K+ F+ ++S+E+R+
Sbjct: 472 VVRMQPVLGEEAFGGMIVSVIEVTAIVDARR----RAEA---ASQAKSMFLANMSHEIRT 524

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+ +I+G  +LL  ++L   +++Q+  V+ I   +  LL ++NDILD + ++AG++++  
Sbjct: 525 PMNSILGHGELLARTRL---DTEQADCVQGIRVCAESLLVIINDILDFSKIEAGMLRIAP 581

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + L  LL  V+  ++ +  +  + +++++ G       D  RL QI   ++ NA+ F+
Sbjct: 582 EDVDLGGLLARVRTMLSEQAQKKGLDLQLVTAGLPQVVSTDAGRLTQILVNLVGNAIKFT 641

Query: 703 SKGST--VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             G     +   A   G     FSV++ G  I  D  K +F  F        R   G GL
Sbjct: 642 EHGGVELSVRGEAHAGGKAALCFSVRDTGIGISADRQKGIFVSFEQADGSLTREYGGTGL 701

Query: 757 GLSIVESFINLHGGH-VSISS 776
           GL+I  S + L GG  +S+ S
Sbjct: 702 GLTIANSLVRLLGGSGISVKS 722


>gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 931

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     LN+ Q+ Y+  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L++ L++V   +A   HE  + + + I +     F
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + +L NA+ F+ +G+  I    R            +++ G  I E    
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVQLEVQIRDTGIGIAELQQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504


>gi|255283851|ref|ZP_05348406.1| sensor protein [Bryantella formatexigens DSM 14469]
 gi|255265572|gb|EET58777.1| sensor protein [Bryantella formatexigens DSM 14469]
          Length = 416

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+   S+ELRSPLT ++      +T+       +Q ++ + I +    +  L+ D+L LA
Sbjct: 197 FIASASHELRSPLTVMLSALSAARTAS----PDEQPRFFDSIESEGQRMARLIEDMLLLA 252

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
           + D     +      L+ LL E  +       E  + +++ + +  L     D++R+ Q 
Sbjct: 253 SSDNKTWSIRPGMTELDTLLLETYEKYEPTAREKKLHLQIHLPEDALAPCFCDKERIGQT 312

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRG 749
            S ++ NA  ++  G TV L A   +  F  SV +NG  IP+D  + +F+RF  ++  R 
Sbjct: 313 LSILIDNAFSYTPPGGTVCLSAGTADKYFTISVADNGPGIPDDQKEKIFDRFYRADDARS 372

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            R   GLGL I +  + LH G ++++ + EG       +P
Sbjct: 373 NRGHFGLGLCIAKEIVLLHKGTLTVTDAPEGGAVFTILLP 412


>gi|71907078|ref|YP_284665.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846699|gb|AAZ46195.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 1131

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 7/256 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    R + AL +      +A++ K+ ++  +S+ELR+PL +I+G+  +L
Sbjct: 646 NRQTQLLIQEIESHQRTDAALQQAKVVAEQANQAKSRYITAISHELRTPLNSILGYAQIL 705

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   +   + Q V  I  S   LL+++   LD+A ++ G + L+   +   +L+ ++
Sbjct: 706 AADE--DIPPNRLQAVSVIRKSGDHLLSVIEGTLDIARIEGGKLTLDVKAMDFPELMQQI 763

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712
                 +     +       G+L + V AD +RL QI   ++ NA+ F+ +G     ++ 
Sbjct: 764 VGMFELQARNKGLSFDYQPVGELPAVVRADEKRLRQILINVIGNAVKFTVRGGVSFKVEC 823

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            RD    IF +++ G  IP    + +F  F +     Q  G G+GL+I     +L GG +
Sbjct: 824 RRDMA--IFEIRDTGPGIPAADLERIFEPF-TRGSTVQAGGSGVGLTIARMLTDLMGGEM 880

Query: 773 SISSSDEGVTTINCRI 788
            +SS+    T    R+
Sbjct: 881 QVSSTAGEGTLFRIRL 896


>gi|124265292|ref|YP_001019296.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258067|gb|ABM93061.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 938

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K+ F+  VS+ELR+PL  I+GFT L+   +   L + Q+Q +  +  +   LLNL
Sbjct: 561 RASRAKSEFLSRVSHELRTPLNGILGFTQLMALDEDHPLAAPQAQRLASVQRAGNRLLNL 620

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+L+++ +++  + +    + L+  L+     + +     +I I+      L  +V+ 
Sbjct: 621 INDVLEISRIESAEVAVRTLAVDLDAALHASLSLVQSLARGRSITIEPTPPSGL--WVSG 678

Query: 684 RQRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            +R L Q+   +LSNA+ +S + S V+L   R +G    +V++ G  +  +    +F  F
Sbjct: 679 DERALEQVLVNLLSNAIKYSGEQSPVVLNLQRSDGTVKIAVRDRGVGLTAEQQARLFQPF 738

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               A R +  G GLGL I        GG + + S     +T   ++P  E
Sbjct: 739 DRLGAERRRIEGSGLGLVIARQLAEAMGGRIDVVSVPGAGSTFTLQLPEAE 789


>gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 732

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 26/311 (8%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           G+ L   I  + D    S + T+ LL    L  S++ L  A  ++  +       AE+AL
Sbjct: 281 GYPLAVNITITEDLYLSSWRSTVRLLGGIGL-VSLLALCGAFILMAIILKRREQDAEQAL 339

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T K EA  +A+  K+SF+  +S+E+R+P+  I+G  +L+  + L   ++ Q  Y   +  
Sbjct: 340 TLKREA-EEANTAKSSFLAMMSHEIRTPMNGILGMAELMLDTPL---DASQRTYAGNVYN 395

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-------IR 668
            +  L+ ++N+ILD + V++G M+++ +T     L+ EV       +H N        IR
Sbjct: 396 GAHHLMRIINEILDFSKVESGYMEIDLTTFDPTRLIGEV-----IGLHRNGATAKQLQIR 450

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI-----FS 722
            ++     L    AD  R+ Q+   +++NA+ F+  G+ TV   A  D  D       FS
Sbjct: 451 TEIAPAAAL-LVSADASRIRQVLGNLINNAIKFTPAGAITVRFVALPDPADATQVQLEFS 509

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I  +  + +F  FV   +   R+  G GLGL+I +  + L  G +   S    
Sbjct: 510 VADSGIGISAEAQQRLFEPFVQADNTISRKYGGTGLGLAICKRLVELMRGDIRCESDIGA 569

Query: 781 VTTINCRIPSK 791
            T  + RIP++
Sbjct: 570 GTRFSFRIPAR 580


>gi|188577308|ref|YP_001914237.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188521760|gb|ACD59705.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 921

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+  Q  Y E I  + 
Sbjct: 540 KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYTESIRRAG 596

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G L
Sbjct: 597 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGLL 655

Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
           G   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  + 
Sbjct: 656 GDITASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 715

Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +F RF   +  R   R  G GLGL+I +      GGH+ + S
Sbjct: 716 KARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVIS 760


>gi|24251268|gb|AAN46188.1| unknown protein [Synechococcus elongatus PCC 7942]
          Length = 977

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 6/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613
           L +  E    A++ K++F+ ++S+ELR+PL  IIG+++++       +  ++       I
Sbjct: 464 LEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKI 523

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + +   LL L+N ILDL+ ++AG M+L   +  L +L+N VK  I   + +N  ++ V  
Sbjct: 524 NNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDC 583

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPE 732
              +G   AD  +L Q    +LSNA  F+ +G+     A    GD  +F V ++G  +  
Sbjct: 584 PADIGLMTADVTKLRQTLLNLLSNASKFTHQGTDS--AAGCCQGDQVVFKVVDSGIGMSP 641

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F  F        R+  G GLGLSI   FI + GG +++ S     +T    +P 
Sbjct: 642 EQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 701

Query: 791 K 791
           +
Sbjct: 702 Q 702


>gi|78048721|ref|YP_364896.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037151|emb|CAJ24896.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1194

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 12/226 (5%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616
            K E   +A   K  F+  + +E+R+P+T ++G ++LL KT++    ++ Q  Y E I  +
Sbjct: 813  KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DATQRSYTESIRRA 868

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL LVND LDLA +++G ++L++    +  L+ EV+  +A    E  +R   +  G 
Sbjct: 869  GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 927

Query: 677  LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733
            LG   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  +
Sbjct: 928  LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 987

Query: 734  MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                +F RF   +  +   R  G GLGL+I +      GGH+ + S
Sbjct: 988  QKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1033


>gi|28897261|ref|NP_796866.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260876228|ref|ZP_05888583.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AN-5034]
 gi|28805470|dbj|BAC58750.1| sensor histidine kinase FexB [Vibrio parahaemolyticus RIMD 2210633]
 gi|308092976|gb|EFO42671.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AN-5034]
          Length = 783

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+   L  +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    DF   I  V++
Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 500 STFTVSIHVP 509


>gi|302340463|ref|YP_003805669.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637648|gb|ADK83075.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 700

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 168/375 (44%), Gaps = 41/375 (10%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN---IAATCSRYYNE 493
           G  +  + +GV +    G I+ +N           NR+     IR    I     R +  
Sbjct: 237 GYIMSKMLDGVLLVDAAGTIRDAN-----------NRILEMLRIRRRALIGQRLIRLFPT 285

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTML--------TFV 543
           +D +D     +T FD ++     TLE  +L    LE   IP+  A ++L          V
Sbjct: 286 TDSFD----PMTEFDIDKLDSTATLEREVLCGFSLE-DAIPVLAAFSLLLDSAGEVGGAV 340

Query: 544 NVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            V   +R  R L T K EA  KAD  K  F+ H+S+++++PL +IIG+  LL +     L
Sbjct: 341 VVVHDLRFRRELETAKLEA-EKADRAKARFLAHMSHDIKTPLNSIIGYAQLLVSDD--EL 397

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +S+  +    I  S   LL L++DILD   ++AG M +        +LL E+        
Sbjct: 398 SSRNRRLSISICESGNHLLELLSDILDATQMEAGRMVIERKGFSFRNLLREIAIGYRLTA 457

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
             + +  +V     L  F + D++R+LQI + ILSNA+ ++  G  V  +    + +   
Sbjct: 458 KRHGLDFRVYLGPNLPMFLLGDKKRILQILNNILSNAVKYTPVGGRVECEVGTSSDETSA 517

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSI 774
                  V + G  I E++ KS+F  F   A + G+  G GLGL+I      + GG +  
Sbjct: 518 ARVLRIIVSDTGPGISEELQKSIFEPFARGAEYAGRVEGQGLGLTISRELTRMMGGILEY 577

Query: 775 SSSDEGVTTINCRIP 789
             ++ G ++    IP
Sbjct: 578 RDAEIGGSSFIFTIP 592


>gi|167846088|ref|ZP_02471596.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei B7210]
          Length = 349

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  +  + + D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|167719960|ref|ZP_02403196.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei DM98]
          Length = 327

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  +  + + D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T + RI
Sbjct: 303 TASARI 308


>gi|26986877|ref|NP_742302.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida KT2440]
 gi|24981479|gb|AAN65766.1|AE016202_9 sensory box histidine kinase [Pseudomonas putida KT2440]
          Length = 593

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + Q  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 339 LLTYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 388

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+        ++++  +E I      L  L+ND+L+ +   +G+ KL  +
Sbjct: 389 VTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 448

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              ++DLL+  +   A +     I +    D  L    AD  +L ++   +L NA+  ++
Sbjct: 449 PCAIDDLLDHAQSRFAEQAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTA 508

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
            G  + L A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 509 NGGRIRLHARRHAERVIISVEDNGEGISYGQQARIFEPFVQVGRK--KGGAGLGLALCKE 566

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 567 IVQLHGGRMGVFSRPGQGTQFYMALP 592


>gi|33597571|ref|NP_885214.1| virulence sensor protein [Bordetella parapertussis 12822]
 gi|37538294|sp|P40330|BVGS_BORPA RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33573999|emb|CAE38319.1| virulence sensor protein [Bordetella parapertussis]
          Length = 1238

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 9/252 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  IIG  +L        
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQ 752

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +QS  V Y SA S  LL L+ DILD+A ++AG   L      L  L     +     
Sbjct: 753 EPDRQSIQVAYDSARS--LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGL 810

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  V+   AR +G+  
Sbjct: 811 ARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAA 870

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              FSV + G  I E   + +F  F     +A  G   G GLGLSI    + L GG + +
Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930

Query: 775 SSSDEGVTTINC 786
            S+    TT++ 
Sbjct: 931 RSAPGVGTTVSV 942


>gi|323704299|ref|ZP_08115878.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536365|gb|EGB26137.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 546

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 119/217 (54%), Gaps = 10/217 (4%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E +  FV ++S+EL+SPLT I+GF  +LK  K           + YI + +  L  LV D
Sbjct: 333 EKQKKFVSNISHELKSPLTAILGFIQILKEEK-----EYNQVILNYIESETIKLKELVLD 387

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           IL+++ + +  +KL   TI L+ LL ++ ++I  K  + NI I   I DG   S +AD  
Sbjct: 388 ILEVSKLQSYELKLQKKTINLSWLLLKICENINLKALKFNISINTNIQDG--ISLIADED 445

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           ++ Q    +L NA+ +S+  + + +   ++ N +    VK+NG  IPE+  + +F+RF  
Sbjct: 446 KISQAIVNLLDNAIKYSNPHNQIDVSLYKNFNREISIKVKDNGIGIPENEIRHIFDRFYR 505

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
             +     G GLGL+IV+  I  HGG + ++S  D+G
Sbjct: 506 AKNALSIGGNGLGLTIVKEIIEKHGGRIEVASKIDKG 542


>gi|312622322|ref|YP_004023935.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202789|gb|ADQ46116.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 467

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN         +++ + +   +TEK E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKKDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    ADR  + ++   +L NA+ ++  G  + +
Sbjct: 327 IVEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF   +  R    GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPERLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGV 781
            ++ +  S+EGV
Sbjct: 446 QNIWV-ESEEGV 456


>gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 415

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 147/343 (42%), Gaps = 44/343 (12%)

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-------Q 537
           ATC+       G      I+T  DD     +   +       ++ + PL NA       +
Sbjct: 70  ATCAALRRLPGGEHTPILIMTGLDD----FESITKAYDAGATDFIVKPL-NAMLLTHRIR 124

Query: 538 TMLTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLK 595
            M+    V   +R  +A LT+  +A  +   +K+ F+  +S+E+R+P+  ++G TD LL 
Sbjct: 125 YMVRADQVLQELRESQATLTQARDAAIEGARLKSEFLATMSHEIRTPMNGVLGMTDWLLD 184

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T     L ++Q    + I +S   LL ++NDILD + +++G + L      L+  L+ V 
Sbjct: 185 T----PLTAEQLDCAQTIRSSGDALLVIINDILDFSKIESGKLSLELLDFDLSTFLDRVM 240

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---- 710
                +     + +   I++   GS   D  RL QI S +L+NA+ FS  GS  +L    
Sbjct: 241 ALFGERAQRKGLLLTSRIAEDVPGSLCGDPARLQQILSNLLANAIKFSEHGSVSVLVELD 300

Query: 711 -KAARDNGDFI------------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            + A    +F                   FSV +NG  I       +F  FV       R
Sbjct: 301 QRPAEQGLEFPATRYGEPSAQQEQVTHIRFSVSDNGIGIEPSAFSKLFQPFVQADGSTTR 360

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  G GLGL+I +  + L GGH+   S     +     +P ++
Sbjct: 361 KYGGTGLGLAICKQLVELMGGHIGAESEPGSGSIFRFTVPLQQ 403


>gi|160890194|ref|ZP_02071197.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|317481456|ref|ZP_07940522.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860582|gb|EDO54013.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|316902366|gb|EFV24254.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 508

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E   +A+ +K++F+ ++S+E+R+PL  I+GF+ +L +  +   ++K+  Y+  I 
Sbjct: 271 LLAAKEKAEEANRLKSAFLANMSHEIRTPLNAIVGFSSIL-SDYIQDEDTKE--YIHIIE 327

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++ +LL L+NDILDL+ ++AGI++     + +N  L+E+ Q++A     + + I+++  
Sbjct: 328 ENTQLLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDEM-QTMAKLKLPSEVSIRLLPG 386

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                     +R+ Q+ +  LSNA+  + +G   I           F V++ G  IP + 
Sbjct: 387 ADYCIIHTVPKRVRQVLNNYLSNALKHTEEGFIDIGYHLPQEDRIRFFVRDTGCGIPPEK 446

Query: 735 CKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            K VF RFV  N+    ++G GLGLSI         G V +SS
Sbjct: 447 QKDVFERFVKLNSF---KQGTGLGLSICTMIAEKMNGKVGVSS 486


>gi|304310584|ref|YP_003810182.1| Sensor kinase GacS [gamma proteobacterium HdN1]
 gi|301796317|emb|CBL44525.1| Sensor kinase GacS [gamma proteobacterium HdN1]
          Length = 994

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 11/226 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EA+ +A  IK+ F+ ++S+E+R+PL  +IGFT LL  S + +    Q  Y+E I  SS
Sbjct: 302 RKEAV-EASRIKSEFLANISHEIRTPLNAVIGFTTLLLKSDIKTF---QYDYLETILKSS 357

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-RIKVISDGK 676
             LL ++ND+LD + ++AG + L  +     +L+ +V   +A   +E ++ +I +     
Sbjct: 358 EGLLAIINDVLDFSKIEAGKLSLESTPFNFQNLVEDVLTMLAPMAYEKHLEQISLYYSDV 417

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPE 732
               + D  RL QI + +++NA+ F+S+G  V+     D+ + +     SV + G  + +
Sbjct: 418 PQQIIGDPLRLKQILTNLVNNAIKFTSQGEVVVRVMLEDSRNHLCVIKVSVTDTGIGLTK 477

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +   ++F+ F    +   RR  G GLGL I +  +    G + I S
Sbjct: 478 EQQSALFHAFQQADNSAARRHSGTGLGLVISKHLVEQMRGQIGIES 523


>gi|300694174|ref|YP_003750147.1| sensory histidine kinase in two-component regulatory system with
           baer [Ralstonia solanacearum PSI07]
 gi|299076211|emb|CBJ35524.1| sensory histidine kinase in two-component regulatory system with
           BaeR [Ralstonia solanacearum PSI07]
          Length = 520

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 17/240 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYISA 615
           E L    +++      +S+ELR+PL  + G      D ++     SL S Q++       
Sbjct: 277 ETLEANQKMRRQLTADISHELRTPLAVLRGELEALEDGVRALTPASLTSLQAEV------ 330

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---I 672
             + L  L++D+ +L+  D G +  +  +I L D +    Q   +++ E +I +++    
Sbjct: 331 --STLSKLIDDLYELSLADVGALAFHMQSIDLADTVCSAAQGFTSRLMEKSIALQLDLPT 388

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +  +   D QRL Q+   +L N + ++  G T+ ++  RD   +   V+++   +PE
Sbjct: 389 GPSRDATIQGDAQRLRQLMQNLLENTLRYTDAGGTLRIRVHRDGAWWCLDVQDSAPGVPE 448

Query: 733 DMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            M   VF+R F ++  R + + G GLGLS+ ++ +  HGG +    S  G   I  R+P+
Sbjct: 449 AMLPRVFDRLFRADPSRSRAQGGAGLGLSLCQTIVQTHGGTIEARPSPLGGLWIAIRLPA 508


>gi|254421982|ref|ZP_05035700.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196189471|gb|EDX84435.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 901

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 153/322 (47%), Gaps = 50/322 (15%)

Query: 507 FDDERKSLQGTLELLSDSVLE--YSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEAL 562
           F +  K+++  + LL    L   Y  +   NA    +  F ++T+  +  R L    +A 
Sbjct: 400 FTNGTKTIEDEVPLLDGRTLRRIYGPVQQDNATFAYLYMFEDITERKQVIRELAHATKAA 459

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A++ K+ F+ ++S+ELRSPL +I+GFT +L+ S   + N +Q++ ++ I  S   LL 
Sbjct: 460 EAANQAKSEFLANMSHELRSPLNSILGFTHILRES---NPNLEQAENLDIIYRSGEHLLA 516

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           L+ND+LD++ +++G ++LN +   L  LL+E++Q  ++ +    +R  +    KL  + V
Sbjct: 517 LINDVLDISKIESGRVELNNTQFDLYCLLDELQQMFSSAIDRKGLRFLMRRSPKLPRTVV 576

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------------------- 718
           +D  +L QI   +LSNA+ F++ G T+ L     N D                       
Sbjct: 577 SDHLKLRQILINLLSNALKFTAVG-TITLSVHSQNQDGQNQHSQNQYGQNQLNHACESLE 635

Query: 719 ----------------FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIV 761
                             FS+ + G  I       +F  FV + +      G GLGL+I 
Sbjct: 636 KQDNPQTTTTKPPSTLLTFSISDTGPGIAAADQAHLFEAFVQTQSGLDSPEGTGLGLAIS 695

Query: 762 ESFINLHGGHVSISSS-DEGVT 782
             +I L GG++++ S   EG T
Sbjct: 696 HEYIQLLGGNLTVDSQLGEGAT 717


>gi|169334382|ref|ZP_02861575.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259099|gb|EDS73065.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1210

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 130/252 (51%), Gaps = 17/252 (6%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   ++TD ++ E  +  +N AL KA       +E K+ F+  +S+++R+P+  I+G T 
Sbjct: 665 LIIRDITDQIKQEELIEAQNRALEKALKKANAANEAKSLFLSSMSHDIRTPMNGIVGMTT 724

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           + K S       K    ++ I  SS  LL+L+NDILD++ +++G + L    + ++DL +
Sbjct: 725 VAKESIKNEDRIKDC--LDKIDVSSKHLLSLINDILDMSRIESGNLILKEENVNISDLFH 782

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---- 708
           +    I ++  E N  I+   D +  + + D  RL Q+F  ILSNA+ F+     +    
Sbjct: 783 DTLTIILSQAKEKNQNIRFDIDVEHENIIVDSLRLQQVFINILSNAIKFTEYNGNIDINI 842

Query: 709 --ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
             + +  +   D+ F   ++G  I ++   ++F  F   +    G+ +G GLG++I +  
Sbjct: 843 YELPQTKQGYADYKFEFIDDGIGISKEFIDNIFEPFERENKEMSGKIQGTGLGMTITKRI 902

Query: 765 INLHGGHVSISS 776
           +++ GG + + S
Sbjct: 903 LDMMGGKILVRS 914


>gi|228952886|ref|ZP_04114954.1| Sensor histidine kinase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806796|gb|EEM53347.1| Sensor histidine kinase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 385

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 274 DGEKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384


>gi|153833582|ref|ZP_01986249.1| MmoS [Vibrio harveyi HY01]
 gi|148870109|gb|EDL69056.1| MmoS [Vibrio harveyi HY01]
          Length = 641

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 10/219 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+P+  IIG   LL  +KL   + +Q  +V  I++SS  L+ ++
Sbjct: 240 ANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTKL---DEQQKDFVSIINSSSNSLMVII 296

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           +DILD + ++AG ++L  +T  L DLL+EV +    K  +  +++    D +L   V  D
Sbjct: 297 DDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPLEVKGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL--KAAR--DNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+ S +LSNA+ F+ +G   ++  + +R  D     F V ++G  I ++  ++VF
Sbjct: 357 MGRLKQVLSNLLSNAVKFTERGHVKLMVSQVSREADVAGVHFRVVDSGIGIAKENQQTVF 416

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F        R+  G GLGL+I  S + + GG + ++S
Sbjct: 417 EKFQQADGSTTRKYGGTGLGLAICSSLVEVMGGEIRLTS 455


>gi|13641117|gb|AAK31604.1| RtpA-like protein [Pseudomonas synxantha]
          Length = 848

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 12/227 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L+ +Q  Y+  I  S+
Sbjct: 174 RKEAL-EASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRQLDYLGTIEKSA 229

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDG 675
             L  ++N+I D + ++AG + L+     L DLL +     A   H   + +   V  D 
Sbjct: 230 DNLXGIINEIXDFSKIEAGKLVLDSVPFNLRDLLQDTLTIFAPAAHAKQLELVSLVYRDT 289

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPE 732
            L + V D  RL QI + ++SNA+ F+ +G++       +  D +    SV++ G  +  
Sbjct: 290 PL-ALVGDPLRLKQILTNLISNAIKFTREGTSSPGDGRDEQEDSVQLRISVQDTGIGLSN 348

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +++F  F    N+   Q  G GLGL I +  I   GG + + S+
Sbjct: 349 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 395


>gi|73538366|ref|YP_298733.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 1152

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 5/251 (1%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +  ++ RA     ++ E L + D  K +F  +VS+E R+PLT ++G  + L   +   
Sbjct: 327 IASAINNARAYEEEKQRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLGPVEDLLMRRSDE 386

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++   + +  +  +   LL LVN +LD + ++AG M+  Y    L     E+     + 
Sbjct: 387 LSAAAKEDLAVVGRNGLRLLRLVNSLLDFSRIEAGRMQATYEPTDLARFTEELASLFRSA 446

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
                + + V  D        DR    +I   +LSNA  F+  G   + L+   D  +  
Sbjct: 447 CERAGLTLTVDCDTLPEPAFVDRAMWEKIVLNLLSNAFKFTQAGRIAVSLRTIGDKAE-- 504

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G+ IP D    +F RF  V   H     G G+GL++    I LHGG +   S+ 
Sbjct: 505 LRVADTGTGIPADELPRIFERFHRVQGTHGRTHEGAGIGLALTLELIKLHGGTIRADSTP 564

Query: 779 EGVTTINCRIP 789
              TT    IP
Sbjct: 565 GAGTTFIVEIP 575



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 10/224 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  + +ALR+AD  K+ F+  +++ELR PL  I     +L  S+  +  ++ +Q  + I
Sbjct: 769 ALRHRGKALREADRRKDEFLNILAHELRGPLATISNTAHILGQSRTDTELARDAQ--KRI 826

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVI 672
                 L+ LV+D+LD   +  G ++L+   +   DL   ++ +I T +     +  +V 
Sbjct: 827 ERQLRHLVRLVDDLLDTNRITQGKLQLHIERV---DLQAAIRDAIETCRPLAEELEREVT 883

Query: 673 SDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            D    S    AD  RL Q+   +LSNA  ++  G  V L       + +  VK++G  I
Sbjct: 884 LDVPAESIWLDADPVRLAQVIGNLLSNAYKYTEHGGHVWLSVEPRGDEVLLRVKDDGVGI 943

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           P     S+F+ F  V ++    R G+G+GL++V+  +++HGG V
Sbjct: 944 PAAALPSIFDLFMQVRSSLNRARGGLGIGLALVKRLVDMHGGQV 987


>gi|73749265|ref|YP_308504.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|289433228|ref|YP_003463101.1| histidine kinase [Dehalococcoides sp. GT]
 gi|73660981|emb|CAI83588.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|288946948|gb|ADC74645.1| histidine kinase [Dehalococcoides sp. GT]
          Length = 581

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 122/231 (52%), Gaps = 8/231 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL K  + +  F   + +ELR+PLT II  +D L +    ++++K    V  I+  ++ L
Sbjct: 355 ALEKEAQKRIYFTWALVHELRTPLTPIILASDALHSV---AVDNKLKSLVNNINNGASEL 411

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--KMHENNIRIKVISDGKLG 678
              ++++LDLA  + GI+K  + +   N ++ E+ +      ++HE    +K+  +  L 
Sbjct: 412 NTRISELLDLARGEVGILKFVHESFDFNAVIREISEFFMPEIRLHEQKFSVKL--ESGLP 469

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               DR R+ Q+ S +L NA+ +S  GS + ++ A    +F+F++ ++G  IPED  +++
Sbjct: 470 EVSGDRGRIKQVVSNLLENAIKYSGNGSEINIQTALAGQEFLFTISDSGPGIPEDKLENI 529

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ +    +     G+GLGL++ +  I  H G + +SS      + +  +P
Sbjct: 530 FDPYRC-GNELHPSGLGLGLALSKMIIEKHSGKIWVSSVKNSGCSFSFTLP 579


>gi|84496374|ref|ZP_00995228.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649]
 gi|84383142|gb|EAP99023.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649]
          Length = 678

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 2/230 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L   D  K+ FV  VS+ELR+PLT+I G+ ++L    LG L+  Q + +  I  ++  L 
Sbjct: 444 LEALDRQKDEFVGTVSHELRTPLTSIAGYLEMLADGDLGELSPAQLKAMAVIERNTFRLR 503

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+L L  ++   +  ++  + L  L+ +V Q +  +  +N + + V    +     
Sbjct: 504 GLIEDVLVLNRIETRGLDPSFVPVDLAQLVRDVVQDLQPQARDNEVTLDVSDLPQTCVVE 563

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  +L +  + ++ NA+ FS  G  V++    +        +++G  IP    + +F+R
Sbjct: 564 GDALQLGRALTNVVGNAVKFSKSGGLVVVSVVVELDAVRIRCRDSGIGIPAADMEQMFSR 623

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F   SNA  G   G GLGL+IV++ I  H G + + S +   TT++  +P
Sbjct: 624 FFRASNATSGAIPGTGLGLAIVKAIIEAHHGELELHSVEGEGTTVSLTLP 673


>gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii NCTC
           11218]
          Length = 807

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +       A+  K+ F+ ++S+E+R+P+ +I+G + LL TS   +L+ +Q  ++  I
Sbjct: 457 ALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTS---NLSEEQRNHLITI 513

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+L+NDILD++ +DAG + +      L  L+ +V      K  ++ +++ +  
Sbjct: 514 DKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDL 573

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSS 729
           D  L   + D  R+ QI    +SNA+ F+ +G   I        + +F    SV++NG  
Sbjct: 574 DKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIG 633

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +  D    VF  F        R+  G GLGL+I +   +L GG V + S
Sbjct: 634 LSADDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVES 682


>gi|312793632|ref|YP_004026555.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180772|gb|ADQ40942.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 467

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN         +++ + +   +TEK E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFIFNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    ADR  + ++   +L NA+ ++  G  + +
Sbjct: 327 IAEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF   +  R    GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGV 781
            ++ +  S+EGV
Sbjct: 446 QNIWV-ESEEGV 456


>gi|257094403|ref|YP_003168044.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046927|gb|ACV36115.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 884

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 14/234 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  I+G  ++L+ + L   N++Q++Y+  IS++   L  L+ DIL
Sbjct: 363 KSQFLSNMSHEIRTPLNGILGMAEVLERTPL---NNEQARYLRAISSAGQALHGLLGDIL 419

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSFVADRQR 686
           DLA ++AG + L      L  LL ++ ++          ++    +   +L     D  R
Sbjct: 420 DLAKIEAGKIVLEDIDFDLESLLVQLAETFRELASASGKSLTADFVGVARL-CLRGDPTR 478

Query: 687 LLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFN 740
           L Q+ S +L+NA+ F+ +G     V+  A+R     +   FSV++ G  I  +    +F 
Sbjct: 479 LRQLLSNLLTNAVKFTERGGITLNVVRLASRPEDARVWLRFSVRDTGIGIAPEAAARLFQ 538

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            FV       RR  G GLGL I +  + L GG +S+ S+    +T    +P  E
Sbjct: 539 PFVQADQSTTRRFGGSGLGLVICKQLVELMGGSISVDSTVNQGSTFTAELPFAE 592


>gi|302529717|ref|ZP_07282059.1| predicted protein [Streptomyces sp. AA4]
 gi|302438612|gb|EFL10428.1| predicted protein [Streptomyces sp. AA4]
          Length = 581

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 12/245 (4%)

Query: 553 RALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  T  NE  R  +E++N+    V  V++ELR+PL+ I G+   L+ ++ G ++      
Sbjct: 343 RLATAFNEMARAREELENARKAMVSDVAHELRTPLSTIRGW---LEAAQDG-ISQLDDDL 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   +  L ++V+D+ DLA  DAG ++++   +  N LL  +  + A +     + +
Sbjct: 399 VASLLEEAVHLQHIVDDLQDLALADAGALRVHPEPVDANTLLTHLAAAHAPRAEAAGVSL 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V    +  +  AD  RL Q    ++SNA+  +  G +V + A+R + +  F V + G+ 
Sbjct: 459 SV-PPMENPAITADPVRLRQALDNLVSNAIRHTPPGGSVTVTASRRDNEASFEVADTGTG 517

Query: 730 I-PEDMCKSVFNRF-VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           I PED+ + VF+RF  ++  R +   G GLGL+IV      HGG V+ +S+    TT   
Sbjct: 518 IAPEDLPR-VFDRFWRADPSRSRVSGGSGLGLAIVRKLAEAHGGAVTAASTPGKGTTFTL 576

Query: 787 RIPSK 791
           R P++
Sbjct: 577 RFPAQ 581


>gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 865

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 5/244 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A+ +    ++T+  R    L E   A   A + K +F+ ++S+ELR+PL  I+G+  +L
Sbjct: 379 DAKIVCMLEDITERKRLIAELIEAKGAAESATKAKTAFLANMSHELRTPLNAILGYAQML 438

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 +L  +Q   +  +  S   L  L+ D+LD++ +++  M+L  S   L   L+ +
Sbjct: 439 GDDD--NLTEQQRDALTTMRTSGEHLATLLEDLLDISKIESDRMELAPSEFELTRFLDGL 496

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     +       G L   V AD +RL Q+   +L NA+ F+ +GS V  +A 
Sbjct: 497 VAPFRMRAESKELHFGYEISGDLPGMVRADERRLRQVLINLLGNAIKFTERGS-VTFRAN 555

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHV 772
             +G   F V++ G  IP D  + +F  F       Q+  G GLGL+I +  + L  G +
Sbjct: 556 MHDGKVRFQVEDTGRGIPGDAMEDIFAPFRQAGQPEQQVEGTGLGLAISKRLVELMDGSI 615

Query: 773 SISS 776
            + S
Sbjct: 616 GVES 619


>gi|171056745|ref|YP_001789094.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170774190|gb|ACB32329.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 215

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 99/199 (49%), Gaps = 6/199 (3%)

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G LN +Q +Y+  I AS   LL L+NDILDL  ++AG M+L  +   L  LL      I
Sbjct: 2   FGELNQRQLEYLHDIHASGHHLLQLINDILDLTKIEAGRMELELAPCDLAQLLESAIGLI 61

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNG 717
             +     +R+       LG + AD ++L Q    +LSNA+ F+ +G  V L+A R D G
Sbjct: 62  RERATRQGLRLHCEIAPGLGGWTADARKLKQAVLNLLSNAVKFTPEGGRVTLRARRADEG 121

Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           D      +V + G  I       VF  F   S ++  +  G GLGLS+V  F+ LHGG V
Sbjct: 122 DAHVAEIAVIDTGVGIAPGDQALVFEEFRQASGSYLRKSEGTGLGLSLVRRFVELHGGTV 181

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S     ++   R+P +
Sbjct: 182 RVDSVLGRGSSFVIRLPER 200


>gi|220917252|ref|YP_002492556.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955106|gb|ACL65490.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 595

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 15/262 (5%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII-GF 590
           P+ +    + F + T  +R E       + LR+A   +   +  VS++LR+PL  I+ G 
Sbjct: 339 PVTDGGVAVFFRDATRRMRDE-------QRLRQAQAFEQQLIGIVSHDLRNPLNAILLGA 391

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLND 649
           + LL    L   N      +  I +++     L+ D+LDL      G + +      L  
Sbjct: 392 SSLLAREDLSDRNVAS---IARIRSAAERAARLIRDLLDLTRARLGGGIPVQPRPADLRQ 448

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +  +V   +     +  I ++   D   G +  D  R+ Q+   +++NA+ + ++G+ V 
Sbjct: 449 VAQQVVDELEPSYPDRPISVEASGDTH-GQW--DPDRIAQVIGNLVTNALKYGARGTPVA 505

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           ++ A ++G+   SV N G+ IP +  +++F      A     R VGLGL IVE   + HG
Sbjct: 506 VRIAAEDGEVRLSVHNQGTPIPAETVRTIFEAGGRAAPDPTGRSVGLGLFIVERIADAHG 565

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G V + SS+E  TT    +P K
Sbjct: 566 GRVEVHSSEEDGTTFTVWLPRK 587


>gi|167645940|ref|YP_001683603.1| histidine kinase [Caulobacter sp. K31]
 gi|167348370|gb|ABZ71105.1| histidine kinase [Caulobacter sp. K31]
          Length = 534

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 9/242 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M+   +V+D V   ++  E   A   A   K++++  +S+E+R+PL  ++G   ++  ++
Sbjct: 135 MVVMADVSDEVELIKSEAEARAAAEAASLAKSAYLAFMSHEIRTPLNGLLGMVQVMAANE 194

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L   N  Q + +  +  S   LL+++NDILDL+ ++AG +        L +LL  V + +
Sbjct: 195 L---NDGQQRRLGIVERSGRNLLSVLNDILDLSKIEAGKLVRESHVFQLRELLMAVTEPL 251

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                 N++ +++ +  G  G +  D  ++ Q+ + +LSNA+ F+S G  V+  A R   
Sbjct: 252 VEAAGLNSVSVEMEMEHGLEGCWEGDSAKIRQVLTNLLSNALKFTSDGKVVL--ACRSAP 309

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           D + F V++ G+ I  D   S+F  F        RR  G GLGL+I    ++  GG +++
Sbjct: 310 DGVAFEVRDTGAGISTDRLDSIFENFTQAEASTARRFGGTGLGLTICRDLVDFMGGTLTV 369

Query: 775 SS 776
           SS
Sbjct: 370 SS 371


>gi|153812168|ref|ZP_01964836.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174]
 gi|149831823|gb|EDM86909.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174]
          Length = 747

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 123/236 (52%), Gaps = 11/236 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+    E  +    A++ K  F+ ++S+++R+P+  IIG T L++        +K  +Y
Sbjct: 334 KAKNVAKEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHD--AGNKAKVIEY 391

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I +SS  LL ++ND+LD++ ++AG     YS   + DL+ E+     T+++E    +
Sbjct: 392 ADKIDSSSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELDTIFHTQIYEKQQTL 451

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFS 722
            +I +     +V  D+  L+QIFS +LSNA+ ++ +G  +          +     + F 
Sbjct: 452 TIIKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGKIQFFVEECETKSSVYAKYRFL 511

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V +NG  +  D   ++F+ F    ++   + +G GLG++I ++ +   GG + + S
Sbjct: 512 VSDNGMGMSADFKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVES 567


>gi|153840375|ref|ZP_01993042.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AQ3810]
 gi|149745962|gb|EDM57092.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AQ3810]
          Length = 683

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+   L  +Q ++
Sbjct: 164 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 220

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 221 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 280

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    DF   I  V++
Sbjct: 281 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 340

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 341 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 399

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 400 STFTVSIHVP 409


>gi|330821098|ref|YP_004349960.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327373093|gb|AEA64448.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1246

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 16/256 (6%)

Query: 531  IPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            I LP+ +  L   F +V+  V+A        + ++ AD  K+ F+  +++ELR+PL  + 
Sbjct: 839  IGLPDGRHGLVCYFRDVSAQVQA-------RQRMQHADRQKDEFLAMLAHELRNPLAPVR 891

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASST-ILLNLVNDILDLATVDAGIMKLNYSTIVL 647
               +LL  S     +++    V  I    T IL  LV D+L+++ +  G++ L    + L
Sbjct: 892  HCVELLAASPD---DARVPGRVTPILMRQTGILGRLVEDLLEVSRITRGLVTLRREPVRL 948

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            + ++ +  ++           + V  D  L + + D  RL+Q    +L+NA  ++  G  
Sbjct: 949  DSIVEQAVEAARPLFEARGHALTVHGDPAL-TVLGDPTRLVQCVLNLLNNAAKYTEPGGA 1007

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            + +++ R     +  V +NG  IP ++   VFN FV       RR  G+G+GLSIV   +
Sbjct: 1008 IRIESVRREARAVIGVTDNGRGIPAELLPHVFNLFVQGERTPDRREGGLGIGLSIVAELV 1067

Query: 766  NLHGGHVSISSSDEGV 781
              HGG V+  S+  G+
Sbjct: 1068 ARHGGSVAADSAGPGL 1083



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 23/243 (9%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA-- 615
           + EAL + D  K +F  ++S+E R         T L              Q  E + A  
Sbjct: 317 RAEALIELDRGKTAFFSNISHEFR---------TPLTLLLGPLEEACANPQVPEGVRAQL 367

Query: 616 -----SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                +S  LL LVN +LD A ++AG ++ ++    L  L  ++     + +    +R+ 
Sbjct: 368 GIAHGNSRRLLRLVNALLDFAQIEAGRLRASFRPTDLAALTRDIASPFRSMIERAGLRLA 427

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V+ +  LG  V  D +   ++ S +LSNA  F+ +G+ + ++  R+    +  V + G  
Sbjct: 428 VVCEA-LGEPVHVDAELWEKVLSNLLSNAFKFTLQGA-IEVRLRREGRHAVCEVADTGIG 485

Query: 730 IPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           +  D    +F RF     NA R    G G+GL++    + LHGG +  +S     TT   
Sbjct: 486 VAADALPRLFERFYRVAGNAGRSM-EGTGIGLALARELVGLHGGTIEAASEVGRGTTFTI 544

Query: 787 RIP 789
           R+P
Sbjct: 545 RLP 547


>gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 933

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     LN+ Q+ Y+  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L++ L++V   +A   HE  + + + I +     F
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + +L NA+ F+ +G+  I    R     +      +++ G  I E    
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHHVQLEVQIRDTGIGIAELQQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504


>gi|237715073|ref|ZP_04545554.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408978|ref|ZP_06085523.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229444906|gb|EEO50697.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353189|gb|EEZ02284.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 785

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 141/270 (52%), Gaps = 17/270 (6%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +   +  ++T+    E+ L +      ++D +K++F+ ++S+E+R+PL  
Sbjct: 383 ALVPMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ LL  ++      ++  Y   I+ +S ILL L+NDILDL+ ++AG   L Y    
Sbjct: 443 IVGFSQLLPAAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497

Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           +N  L EV ++I   +H+  ++  + ++ D +  +     D+ R++Q+ +  L+NA  F+
Sbjct: 498 MN--LGEVCRTIYA-VHKERVKEGVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFT 554

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             G  + L   R + +    VK+ G  I  +    +F RFV      Q  G GLGLSI +
Sbjct: 555 YAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICQ 611

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             I   GG + ++S     +T    IP +E
Sbjct: 612 MIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|237749393|ref|ZP_04579873.1| osmosensitive K+ channel signal transduction histidine kinase
           [Oxalobacter formigenes OXCC13]
 gi|229380755|gb|EEO30846.1| osmosensitive K+ channel signal transduction histidine kinase
           [Oxalobacter formigenes OXCC13]
          Length = 895

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 126/237 (53%), Gaps = 7/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ--YVEY 612
           + +K     ++++++NS +  +S++LR+PL  ++G  D LK   L S ++K S+   ++ 
Sbjct: 651 VAQKTVVQMESEKLRNSLLSAISHDLRTPLAALVGLADTLK---LTSPDAKASEKEIIDS 707

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  + +LVN++LD+A +++G ++LN     L +++     S ++ + E  I +++ 
Sbjct: 708 IHHSAMRMNDLVNNLLDMARLESGTVQLNRQWQPLEEVIGSALSSCSSLLKERPINVQL- 766

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  L     D   + ++ + IL NA  ++   S++ +   R +G+ I ++ ++G  +P 
Sbjct: 767 -DDSLPLVNIDAVLIERVLANILENASKYTPAHSSIEINGFRQDGNIIITIDDHGPGLPP 825

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               ++F +F   +      GVGLGL+I ++ +  HGG +   S   G      R+P
Sbjct: 826 GRENTIFEKFERGSKENATPGVGLGLAISKAVMKAHGGSIEGESRYNGGARFTLRLP 882


>gi|226227766|ref|YP_002761872.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca
           T-27]
 gi|226090957|dbj|BAH39402.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca
           T-27]
          Length = 479

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 21/275 (7%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + D  L  +  PLP+   +L   ++T               +R+ + ++  FV +VS+EL
Sbjct: 212 VDDRTLSLTARPLPDGGAVLALYDLTP--------------VRRLEAVRRDFVANVSHEL 257

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT I GF + L+  +L      ++Q+++ + AS   +  +V+D+LDL+ +++G    
Sbjct: 258 RTPLTVIGGFVETLQDEQLPP--ELRTQFLQMVDASVRRMQRIVDDLLDLSRIESGGWLP 315

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699
           N   + +  L  E+   +        + + V I+ G    + AD     QI + +  NA+
Sbjct: 316 NPIELDVAVLAAEIIAPLERPAAAKGVALHVEIAPGAERVY-ADPTAARQILTNLAENAL 374

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
             +  GS  +L +  + G +I  V++ G  I  +    +F RF     A   +  G GLG
Sbjct: 375 RHTPTGSVTLLASPAEGGVWI-GVRDTGVGIGAEHLPRIFERFYRADPARSREAGGTGLG 433

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LSIV      HGG V   S+    TTI   +P  E
Sbjct: 434 LSIVRHLTEAHGGRVRADSTLHVGTTIQAWLPKAE 468


>gi|254500165|ref|ZP_05112316.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11]
 gi|222436236|gb|EEE42915.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11]
          Length = 1417

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 99/182 (54%), Gaps = 2/182 (1%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
            AE  LT+       A   K+ F+  +S+E+R+PL  IIGF++++   + G + N +   Y
Sbjct: 1170 AEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGPIGNDRYKDY 1229

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++ I  S + +++L+ND+LDL+ ++AG   L +S +  ND++NE    +  + +   + I
Sbjct: 1230 LKDIRTSGSHIMSLINDLLDLSKIEAGKQDLKFSAVSANDIINECVALMQPQANRERVII 1289

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728
            +      + + VAD + L QI   +LSN + ++  G  VIL      NG+    V++ GS
Sbjct: 1290 RASLPDAVPNIVADPRSLRQIVLNLLSNGIKYNKSGGQVILSTTLEPNGEVSIRVRDTGS 1349

Query: 729  SI 730
             +
Sbjct: 1350 GM 1351


>gi|197337907|ref|YP_002157653.1| sensor protein LuxQ [Vibrio fischeri MJ11]
 gi|197315159|gb|ACH64608.1| sensor protein LuxQ [Vibrio fischeri MJ11]
          Length = 575

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 120/241 (49%), Gaps = 8/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ L EK  A   ++     FV  +++ELR+PL  ++G  +L++ +++      Q++ +E
Sbjct: 197 DKTLKEKRRA-ENSERATRDFVAMINHELRTPLNGLLGSAELMEDTQI---TDYQNKLLE 252

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S  +L  ++ND+LD + + AG+++L  +      L+  ++Q    +M E  +R  +
Sbjct: 253 TIHQSGQMLRIIINDLLDFSKMSAGMLELKVANFKPCILVKTIEQIFTPQMAEKCLRFDI 312

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I+D    S + D  R+ QI   ++ NA  F+  G  + LK        +  V + G  I
Sbjct: 313 HIADNLPQSLMGDIDRVQQILVNLVGNAFKFTKSGH-ISLKVGWQENALVLIVSDTGCGI 371

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+D  K +F  F  V N+ + Q  G GLGLSI +  ++   G +S  S     +    ++
Sbjct: 372 PQDKQKLLFEPFTQVDNSSQRQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEFQVKL 431

Query: 789 P 789
           P
Sbjct: 432 P 432


>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1727

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 37/262 (14%)

Query: 549  VRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++ + L +KN+AL   R A EI    K+ F+  +S+E+R+P+  +IG T LL      +
Sbjct: 960  VKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDM---N 1016

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            LN +Q  +VE I  S   LL ++NDILD + +++G ++L +    L   + E    ++ +
Sbjct: 1017 LNPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEHQPFKLRTCIEESLDLLSAR 1076

Query: 662  MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNG 717
              E  + +  I D       V D  RL Q+   +LSNA+ F+++G  ++   +   +D+ 
Sbjct: 1077 ASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFTNQGEVIVSVTSSLIQDSA 1136

Query: 718  DFI---------------------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
              +                     F+VK+ G  IP D    +F  F  V  +   Q  G 
Sbjct: 1137 QSLISSEEKNESQPSISPPIYEVQFAVKDTGIGIPPDRMHRLFKAFSQVDASTTRQYGGT 1196

Query: 755  GLGLSIVESFINLHGGHVSISS 776
            GLGL+I +    + GG + + S
Sbjct: 1197 GLGLAISQRLSEMMGGKMWVVS 1218


>gi|148654588|ref|YP_001274793.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566698|gb|ABQ88843.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 695

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 121/222 (54%), Gaps = 16/222 (7%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+AD +K+ F+  +S+ELR+PLT+I+G+T+LL   +     +++ ++V+ +   +  L  
Sbjct: 453 READRLKSEFLSIISHELRTPLTSIMGYTELLLAREFSP--AERREFVQTVYNEANHLYQ 510

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +V D+L +  ++AG ++LN   + L  +++++   +  ++   +  +  I    L    A
Sbjct: 511 IVEDLLGVTRLEAGNVRLNQWAVSLRQIVSDLTAQLNNQISGKHTMLIDIPP-HLPPVYA 569

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS--------TVILKAARDNGDFI-FSVKNNGSSI-PE 732
           DR ++ Q+   +++NA+ +S  G          V L      G F+  +V + G  I PE
Sbjct: 570 DRDKVRQVLVNLITNAVKYSPNGGEIRLTISDNVELPPDHPRGKFVRVAVSDQGIGIAPE 629

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           D+ + ++ RF  V N +  +  G GLGLSI ++ + LHGG +
Sbjct: 630 DLPR-IWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRI 670


>gi|148657294|ref|YP_001277499.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569404|gb|ABQ91549.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 572

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 11/240 (4%)

Query: 560 EALRKADEIKNSFV-QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           +A+R+  E   + + Q V ++L++PLT +IGF +LL T   G LN  Q   +E    +  
Sbjct: 336 DAMRQQSERNVTLLAQMVIHDLKNPLTALIGFLELLST---GELNDPQRALIESALRTGR 392

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  LV+D+LDLA  + G ++L  S + L DL  E    ++  +   +  + +     L 
Sbjct: 393 NLAGLVDDLLDLARYNEGRLRLRLSDVSLPDLCAECAIELSGWLAYESKTLILDVPQTLP 452

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGD-FIFSVKNNGSSIPED 733
           +  AD + L ++   +LSNA+  +  G+T++L+A R    D G+  +  V + G  IP D
Sbjct: 453 TIRADSRLLRRVLLNLLSNALKHTPYGTTIMLRAWREPHPDGGEQTVIEVADTGPGIPPD 512

Query: 734 MCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +F  FV    +   ++   GLGL+  +  ++ HGG + +SS      T   R+P +
Sbjct: 513 QIERIFEPFVGAGESRPARQSSTGLGLAFCKMAVDAHGGTIEVSSFPGDGATFRIRLPDR 572


>gi|46579036|ref|YP_009844.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46448449|gb|AAS95103.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232883|gb|ADP85737.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 832

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 116/230 (50%), Gaps = 9/230 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           ++ +      A+ +K++F+ ++S+++R+PLT IIG  DLL+    G    ++S Y+  + 
Sbjct: 236 ISSRQAVAEAANRMKSAFLANMSHDMRTPLTGIIGMADLLEAP--GCPPERRSAYIAQLK 293

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +S  LL +VNDI D + +++G ++L      L + ++E          +  + +   I 
Sbjct: 294 GASANLLEIVNDITDYSCLESGRLRLLPRHFALRNAVDECLGLFRFTCEQKGLTLTADIP 353

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSS 729
            G   S   D  RL Q    ++SNA+ F+ +G+ TV ++    + + +   F+V++ G  
Sbjct: 354 PGLPDSLTGDDFRLRQALGNLVSNAVKFTRRGTITVAVREEERSAEDVMLRFTVQDTGVG 413

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           IP     ++F  FV    AH  +  G GLGL+I      + GG   + S+
Sbjct: 414 IPLHEQDAIFESFVQGGAAHELRMGGTGLGLAITRDIAAMCGGTAGVHST 463


>gi|225390054|ref|ZP_03759778.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
           DSM 15981]
 gi|225043882|gb|EEG54128.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
           DSM 15981]
          Length = 1138

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 136/269 (50%), Gaps = 21/269 (7%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LT  ++T+SV++ R L E      +A   K++F+  +S+++R+PL  +IG T+L   +  
Sbjct: 480 LTLEDITESVQSRRRLEEALLNEERAGAAKSTFLASMSHDIRTPLNAVIGLTNLALCTPN 539

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            S   K  + ++ I+ SS +LL L+ND+LD++ +++G M+L  +   L + L  V   I 
Sbjct: 540 DS--KKVMECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLAGVVTVIQ 597

Query: 660 TKMHENNIRIKV----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
           ++         V    I+   L     D  RL Q+ + +L NA+ F+ KG  + L+ +  
Sbjct: 598 SQTSVRGQHFDVNAWNITHELL---CGDTVRLSQVLTNVLGNAVKFTPKGGEIYLEISEI 654

Query: 715 -----DNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINL 767
                 +  F+F + + G  +  +    +F  F    NA+    +G GLG++I +  ++L
Sbjct: 655 PSPDPASARFVFRISDTGVGMSREYLSHIFEMFTREQNAYSQGVQGTGLGMAITKRIVDL 714

Query: 768 HGGHVSISSSDEGVTT----INCRIPSKE 792
            GG + + S     TT    I+ R+ S++
Sbjct: 715 MGGSIRVESEPGKGTTFTVEISVRLSSRQ 743


>gi|303241000|ref|ZP_07327510.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302591425|gb|EFL61163.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 382

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           K+ F  ++S+EL++PLT I+G   L+  K S +     K S+++  I  +   LL L+N+
Sbjct: 120 KSEFFYNMSHELKTPLTVILGAIQLIEQKNSVIEVDRRKSSKHITTIKQNCYRLLRLINN 179

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LDL+ +++G +K N     +  L+ E+  S+     + ++ I+  +  +      D  +
Sbjct: 180 MLDLSRIESGYIKSNMINCNIVYLVEEISLSVIPYAEQKSLTIEFDTTSEEIISAVDIDK 239

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           + +I   +LSNA+ F++ G  + +  +  N     SVK+ G  IP+DM  +VF R+  V 
Sbjct: 240 IERIILNLLSNAIKFTNPGGKISITVSAKNDKVHISVKDTGIGIPKDMLHNVFERYQQVD 299

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++      G GLGLSIV+SF+ LH G++ + S     +  +  +P K
Sbjct: 300 SSLTKGIEGSGLGLSIVKSFVELHDGNIKVKSEPNVGSEFHIDLPIK 346


>gi|170078867|ref|YP_001735505.1| hybrid sensory kinase [Synechococcus sp. PCC 7002]
 gi|169886536|gb|ACB00250.1| hybrid sensory kinase [Synechococcus sp. PCC 7002]
          Length = 631

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 14/249 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V    +++ +  L +  +A   A + K+ F+ ++S+E+R+PL  +IG   LL T     
Sbjct: 343 LVKYNQALKRQLNLIQAKQAAEMAAQEKSEFLANMSHEIRTPLNGVIGVAQLLLTM---D 399

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L   Q++ V  I  S   LLN++NDILD   +++G ++L        +LL  V   +  +
Sbjct: 400 LKDDQAELVAIIEDSGKTLLNIINDILDFLRIESGSLRLEARCFSFQELLKSVFTLLKVQ 459

Query: 662 MHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--------TVILKA 712
             + +I ++  ++D      + D  RL QI   +L NA+ F++ GS        TV   +
Sbjct: 460 ADQKDIDLQYCVADSIPNILMGDDLRLRQILFNLLGNALKFTATGSVQLVITSHTVPSLS 519

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                +  F + + G  I       +F  F+       RR  G GLGL+I +  +NL GG
Sbjct: 520 DPPTEELSFQILDTGIGIQVAQLNQLFQPFIQADASISRRYGGSGLGLAIAKRLVNLMGG 579

Query: 771 HVSISSSDE 779
            + + S+ E
Sbjct: 580 KIWVESNGE 588


>gi|168704424|ref|ZP_02736701.1| multi-sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 538

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 157/364 (43%), Gaps = 37/364 (10%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLW---KTEENRLSP--------GTHIRNIAATC 487
           TID   + V V  P GR  L+NPA R+L+    T +    P        G  + + A   
Sbjct: 193 TIDSFPDPVLVVDPAGRADLANPAARALFGVGPTAQGDPGPVWSPPEPLGGPVAD-ALQL 251

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R Y + D +D   +     +D  ++    +  + D          P+  T+   V + D
Sbjct: 252 QRAY-QPDQFDQTVSFRLGGED--RTYLPHVRPIRD----------PDGDTLGAAVVLHD 298

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R            R  D+ K+  V  VS+EL++PLT++     +L    +G L +KQ+
Sbjct: 299 VTR-----------FRLLDQFKSDLVATVSHELKTPLTSVRLAVHILLEETVGPLTTKQT 347

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +     S+  LL L+  +L LA +     +  +      +LL     +   +  + +I
Sbjct: 348 ELLIDARDSAERLLALIEQLLALARLQKPHDEGTFHPADPAELLRTAADAARARADDKHI 407

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNN 726
            + V ++  + + V D  R  Q    +L+NA+ ++  G TV L A    +G  + SV + 
Sbjct: 408 TLAVNTNAVVPAVVVDSDRFGQALGNLLNNAITYTPPGGTVALAAGMTTDGAVVLSVADT 467

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  IP +    VF+RF     + +  G GLGL+IV+  +  H G V+  S     TT   
Sbjct: 468 GVGIPAEHLAHVFDRFFRIPGQSEEGGTGLGLAIVKEVVVAHRGTVTCESEPGKGTTFRI 527

Query: 787 RIPS 790
            +P+
Sbjct: 528 ILPA 531


>gi|126659206|ref|ZP_01730344.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619511|gb|EAZ90242.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 701

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 156/335 (46%), Gaps = 40/335 (11%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAI--------ITSFDDERKSLQGTLELLSDSVLE--Y 528
           H   +A    +Y  E++ +D  A +        I+ F DE  S + T  L  + V++  Y
Sbjct: 206 HQSELAKEVLKYPPENNLYDPPAKVLFEQKSLLISEFTDEMIS-KATKNLEHEKVIQKTY 264

Query: 529 SI----IPLPNAQTMLTFVNVTDSVRAERALTEKNEAL------RKADEIKNSFVQH--- 575
            +    +PL   Q  L  +    +  + R LT ++ A+      R A  + N+++ H   
Sbjct: 265 PLSLMAVPLVARQNTLGVITFVTTGYSNRRLTTEDLAIAEEIGRRAAQAVDNAWLYHQAQ 324

Query: 576 ------------VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
                       +S+ELR+PL  IIG+ +LL    L    +KQ+  VE I  ++ +  +L
Sbjct: 325 IANRAKDDFLAMLSHELRTPLNPIIGWCELLNRGNLSPEQTKQA--VEIIDRNAKLQSHL 382

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + D+LD++ +  G + L   ++ L  ++    +++     ++++ I+   D  +     D
Sbjct: 383 IEDLLDVSRILQGKLHLQKCSLDLKTIILSAIETVQLMAKKSSVTIETKLDTDVHPISGD 442

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+   +LSNA+ FS   STV +  +  +G  +  +K+ G  I  +    +F+RF 
Sbjct: 443 ITRLHQVVWNLLSNAIKFSPSHSTVTVSLSAVDGMALIEIKDQGKGIEPEFLPYIFDRFS 502

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +     R   G+GLGL+IV + + +H G +   S
Sbjct: 503 QSESSKNRDYGGLGLGLTIVRNLVEMHDGKIKADS 537


>gi|254249290|ref|ZP_04942610.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
 gi|124875791|gb|EAY65781.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
          Length = 1044

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 11/249 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T     ER L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+    L  
Sbjct: 531 FSDITSQKNIERKLDEALRAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGREPLAD 590

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              ++ Q VE    +S++LLNL++DILDL+ ++AG M +      L + + +        
Sbjct: 591 TQRERLQTVE---GASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPL 647

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
                ++  VI D  L S +V D  R+ QI + ++ NA+ F+ +G   +    RD+ D  
Sbjct: 648 ATAKGLQYDVIVDDALASRYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDADPA 707

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +  V + G  + +    ++F  F        RR  G GLGL++ +    +  G + +
Sbjct: 708 SPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDV 767

Query: 775 -SSSDEGVT 782
            S+  EG T
Sbjct: 768 KSAPGEGST 776


>gi|75907850|ref|YP_322146.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
 gi|75701575|gb|ABA21251.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
          Length = 1026

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 9/222 (4%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            ++IKN F+  VS+ELR+PLT I GF  LL T    + + K    ++    +S  L+ LVN
Sbjct: 797  EQIKNEFISIVSHELRTPLTAIQGFLGLLNTGIYDNKSQKAKWMIQQALTNSDRLVRLVN 856

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            DILDL  + +G ++L        DL+    + + +    + I I +          A   
Sbjct: 857  DILDLERLSSGRVQLVKEVCHAADLMQRAVEGVQSIALASAITISLTP--TTACVWASPD 914

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--- 742
             ++Q    +LSNA+ FS   S + L A   +   +F V++ G  IP +  +++F RF   
Sbjct: 915  LIIQTLINLLSNAIKFSPHNSVITLSAQPQSDWVLFKVQDQGRGIPANKLETIFERFQQV 974

Query: 743  -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             +S+A    + G GLGL+I +S I  H G +   S+  EG T
Sbjct: 975  DISDAR--AKGGTGLGLAICQSIIQQHDGSIWAESTLGEGST 1014


>gi|22095685|sp|Q9XH57|ETR2_PELHO RecName: Full=Ethylene receptor 2; AltName: Full=PhETR2
 gi|5006606|gb|AAD37577.1|AF141929_1 ethylene receptor homolog [Pelargonium x hortorum]
          Length = 741

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 134/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDMARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE +  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ LL EV   I 
Sbjct: 375 ---TPEQRLMVETVLKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALLREVHNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + I +     L  + V D +RL+QI   ++ NA+ FS +G+  I       ++
Sbjct: 432 PIASVKKLCISLNVATDLPEYAVGDEKRLVQIILNVVGNAVKFSKEGNISITAFVAKSES 491

Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD    DF              VK++G  I P+D+ + +F +F        +   G GL
Sbjct: 492 LRDPRAPDFFPICGENQFYLRVQVKDSGLGINPQDIPR-LFTKFAQTQPVATKNSGGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 551 GLAICKRFVNLMEGHIWIDSEGPG 574


>gi|22095686|sp|Q9XH58|ETR1_PELHO RecName: Full=Ethylene receptor 1; AltName: Full=PhETR1
 gi|5006604|gb|AAD37576.1|AF141928_1 ethylene receptor homolog [Pelargonium x hortorum]
          Length = 740

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 34/260 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ +  
Sbjct: 315 ESMRARDLLMEQNVALDMARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L S+Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+ +T  L+ +  +V   I 
Sbjct: 373 -DLTSEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHAVFRQVFNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + I +     L  +V  D +RL+QI   ++ NA+ FS +G   +       ++
Sbjct: 432 PIASVKKLFITLNVSPDLPEYVIGDEKRLVQIMLNVVGNAVKFSKEGIISVTAFVAKSES 491

Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD    DF              VK++GS I P+DM K +F +F  +     +   G GL
Sbjct: 492 VRDPRAPDFFPVSSDNQFYMRVQVKDSGSGINPQDMPK-LFTKFAQSQPVATKNSGGSGL 550

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL+I + F+NL  GH+ I S
Sbjct: 551 GLAISKRFVNLMDGHIWIDS 570


>gi|167824555|ref|ZP_02456026.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 9]
          Length = 351

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  +  + + D  RL QI   ++ N + ++ +GS  +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|149280709|ref|ZP_01886819.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149228533|gb|EDM33942.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 536

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 11/242 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ L +  E   +   IK +F+ ++S+E+R+P+  IIG   LLK +   +L+  Q + + 
Sbjct: 143 QKELIKAKEQAEQGKRIKENFLANMSHEIRTPINGIIGLASLLKKT---TLSPDQEEMIR 199

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  SS  LL ++NDILDL+ +++G  K+N +   +     +V   +  +  E  + +  
Sbjct: 200 LLEISSDSLLGVINDILDLSKIESGKFKINRAETDVIKTCTDVTNLLRIRAMEKKLDLIT 259

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNN 726
             D  L + + AD  RL QI   ++ NA+ F++ GS T+ ++A    G+ I   FSV + 
Sbjct: 260 DYDPALPNLIMADSLRLNQILMNLIGNAIKFTASGSVTLKVEALDKKGNNIQVRFSVIDT 319

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I +D    +F  F     +   +  G GLGLSIV++   L GG + +  S+EG  + 
Sbjct: 320 GIGIAKDKIDKIFETFEQADEQTTIKFGGTGLGLSIVKNLAELKGGILEV-FSEEGHGST 378

Query: 785 NC 786
            C
Sbjct: 379 FC 380


>gi|149177489|ref|ZP_01856092.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
 gi|148843639|gb|EDL57999.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
          Length = 844

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 11/233 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILL 621
           ++A   K+ FV ++S+E+R+P+T ++G+ DLL     GS N  +  +++  I  + + LL
Sbjct: 463 QQASAAKSEFVANMSHEIRTPMTAVLGYADLLA----GSENDPEKLKHLRMIQKNGSFLL 518

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +++NDILDL+ ++AG M+        N+L+ +V   +  +  E  +   V     + S +
Sbjct: 519 DIINDILDLSKIEAGKMECVTEYFAANELIADVYSMMHIRAAEKKLDFSVEYATTIPSQI 578

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKS 737
            +D +RL QI   ++ NA+ F+S+GS  ++ +   +G+     F V + G  I +     
Sbjct: 579 ESDPKRLRQILVNLIGNAVKFTSEGSIRLVISYDASGEPPAIQFEVIDTGIGITDAQLSQ 638

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F        R   G GLGL+I      + GG + + S     TT  C+I
Sbjct: 639 LFQEFSQGDTSVTRAFGGTGLGLAISARLARMLGGSIEVHSKSGSGTTFTCQI 691


>gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
 gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
          Length = 875

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 33/337 (9%)

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD--DE 510
           D  I  +NP +  ++K EE  L   T ++        Y N+ D   L   I    +  DE
Sbjct: 40  DRHITFANPRYMEMFKVEEKDLQTLTPLQ-------VYQNKEDFESLSVRINAQENIVDE 92

Query: 511 ---RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               K+L G L  +  S   + +  L  +  +  F ++T + +A++ L E       A +
Sbjct: 93  VLAMKTLTGELLQVMGSF--HHMKYLDQSMVVAWFYDITAAHQAKQ-LAED------AAK 143

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +K+ F+ ++S+E+R+P+  IIG + L LKT     L+ +Q  YV+ I  +   LL ++ND
Sbjct: 144 MKSEFLANMSHEIRTPMNGIIGMSHLALKTD----LDPRQRDYVKKIQQAGKHLLGIIND 199

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
           ILD + ++AG + +   T  ++++++ +   I  K  E N+ +       L    + D  
Sbjct: 200 ILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCSEKNLELIFHFPQDLPHKLIGDPL 259

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           RL QI     +NA+ F+ KG  +I   +    D G FI F+V + G  + ++    +F  
Sbjct: 260 RLSQILINYGNNAIKFTEKGEVIISAEILERDDEGIFIKFNVSDTGIGLTKEQKSKLFQS 319

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F        R+  G GLGL+I +    L GG V + S
Sbjct: 320 FQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGVES 356


>gi|260171984|ref|ZP_05758396.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|315920296|ref|ZP_07916536.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|313694171|gb|EFS31006.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
          Length = 1365

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592
            +L FV      RA+  +  + E +   K +EI   K  F  ++S+ELR+PL+ I+    +
Sbjct: 802  LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 861

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  S L     +Q   ++Y+  +   LL++VN +LD    +AG M ++ + + + +LL 
Sbjct: 862  LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVNVEELLQ 919

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +          +  I   + SD +   F ADR  +  I   +LSNA  F+  G ++ L  
Sbjct: 920  DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 979

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +   + F+V+++G  +  +    +F RF      GQR+G G+GLS+V+  +  H G +
Sbjct: 980  WTEGDTYGFTVRDSGIGMSPEQLTRIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1037

Query: 773  SISSSDEGVTTINCRIPS 790
            +++S     T     +P+
Sbjct: 1038 TVASEPAQYTEFKVTLPA 1055


>gi|227543825|ref|ZP_03973874.1| sensor histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300908893|ref|ZP_07126356.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
 gi|227186202|gb|EEI66273.1| sensor histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300894300|gb|EFK87658.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
          Length = 381

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 138/263 (52%), Gaps = 15/263 (5%)

Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N Q ++T VN + DS  A R++ ++    RK ++ K+  + +VS++LR+PLT+IIG+  L
Sbjct: 121 NQQHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGL 174

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +  S      +Y       +  +  LV+D+ +   V      +N   I LN L+ +
Sbjct: 175 IEDKQYRS-EEDILKYTHTAYEKAKQMKTLVDDLFEYTKVQQHGAPVNIMKIDLNQLIEQ 233

Query: 654 VKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  S   +     I I   VI +  +    AD ++L ++F+ ++SNA  + +  S + + 
Sbjct: 234 LTASFELEAQHRGIEITSSVIPNPLM--IEADPEKLGRVFNNLVSNAFKYGNGASYIRID 291

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHG 769
           A ++N   +  V N+G+ IPE     +F RF  + A R +   G GLGL+IV+S ++LH 
Sbjct: 292 ARQENDMVVVKVANDGTPIPEKALDHLFERFYRAEASRSRATGGTGLGLAIVKSIVDLHH 351

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G V + +S+E  T     +P K+
Sbjct: 352 GSVKV-TSNEDETAFIVTLPLKQ 373


>gi|255693955|ref|ZP_05417630.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620229|gb|EEX43100.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 482

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 118/215 (54%), Gaps = 2/215 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D  K +F+  +S+EL++P+  I+    LL+  ++G+LN +Q Q  + I  +S  LL+
Sbjct: 255 KELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLLS 314

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           +  ++L++  V+AG ++         +L+    ++   +  + NI+I+V   + K+G   
Sbjct: 315 ITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKLF 374

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +++  + + +LSNA+ +S +   VI+ A +D       V++ G  I     KS+F+R
Sbjct: 375 VDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGIDPRYHKSIFDR 434

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +       + +G GLGLSI + F+  HGG +++ S
Sbjct: 435 YF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468


>gi|254932175|ref|ZP_05265534.1| sensor histidine kinase [Listeria monocytogenes HPB2262]
 gi|293583732|gb|EFF95764.1| sensor histidine kinase [Listeria monocytogenes HPB2262]
 gi|332313012|gb|EGJ26107.1| Sensor histidine kinase [Listeria monocytogenes str. Scott A]
          Length = 459

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 8/239 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           + T+    L+K++  +  FV +VS+EL+SPLT++ GF  LL +  L     +Q++Y+  +
Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGSVTL--TEKEQAEYLTVL 281

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S  +T L +L   +L LA++D          + L++   ++ Q       E  + I +  
Sbjct: 282 SEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL-- 339

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
           D    ++  D + L Q++S +L+NA+ F+ +G  + +            V+++G  I  E
Sbjct: 340 DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGKE 399

Query: 733 DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           DM K +F+RF  +N  R +  G  GLGLSI +  I LH G +++ SS E  TT   ++P
Sbjct: 400 DMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLP 457


>gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 1368

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 118/244 (48%), Gaps = 4/244 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R+  A   + E L + D  K +F  ++S+E R+PLT I+G  + L+T +L   ++   
Sbjct: 315 SARSYEAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPVEELRT-QLAGADAHIR 373

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + ++ +  +   L  LVN +LD + ++AG M+  Y    L+ +  ++     + + +  +
Sbjct: 374 EELDVVHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPTDLSLVTADLASVFRSAIDKAGL 433

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
              +           DR    ++   +LSNA+ F+  GS  +   A D    + +V + G
Sbjct: 434 GFHIDCAPLPEPVYTDRGMWEKVILNLLSNALKFTFDGSIRVTVHAEDT-HAVVTVADTG 492

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +P      +F RF  + NA      G G+GL++V+  + LHGG ++  S++ G T   
Sbjct: 493 IGVPAAEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGGGTRFT 552

Query: 786 CRIP 789
            R+P
Sbjct: 553 VRLP 556


>gi|91793273|ref|YP_562924.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91715275|gb|ABE55201.1| PAS/PAC sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 935

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 128/240 (53%), Gaps = 9/240 (3%)

Query: 545 VTDSVRAERALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +T +++ + A  E ++A+  KA+  K+ F+  +S+ELR+PL  I+GF  LL+  +  +L 
Sbjct: 517 LTATLQDKNAELESSKAIAEKANRAKSEFLSSMSHELRTPLNAILGFAQLLEKGQ-PTLT 575

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   ++ I  +   LL+L+N+ILDLA +++G + L+  +++L D++NE K  +  +  
Sbjct: 576 HTQEVRIQQIIKAGWYLLSLINEILDLAVIESGRLSLSRESVLLIDVINESKAMVEPQAL 635

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGD 718
           +  IR+  +         AD  RL Q+   +L+NA+ ++ +  T+      +KA     D
Sbjct: 636 KREIRLNFLPFSHALHANADHTRLKQVLINLLTNAIKYNRQHGTITVECTEVKAIDKLQD 695

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I  ++K+NG  + E     +F  F       G + G G+GL + +  + L GG + + S
Sbjct: 696 RIRITIKDNGYGLSEANISQLFQPFNRLGQESGSQEGTGIGLVVTKQLVELMGGTIGVKS 755


>gi|84386181|ref|ZP_00989210.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
 gi|84378951|gb|EAP95805.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
          Length = 809

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 116/221 (52%), Gaps = 12/221 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+E+R+P+  IIG + LL       +  +Q +YV+ ++ SS  LL+L+
Sbjct: 239 ANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM---DMPKEQKEYVDMLNTSSLTLLDLI 295

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + ++AG ++L    + +  +  +V+ +   K  +  +R ++  D K+ + V  D
Sbjct: 296 NDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLRFQLAIDPKIPTMVIGD 355

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             +L Q+ + ++ NA+ F+  G   +      +          F V ++G  I ED  +S
Sbjct: 356 GTQLRQVLNNLVGNAIKFTEHGHVTLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQS 415

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           VF++F        R   G GLGL+I +  + L G  + ++S
Sbjct: 416 VFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTS 456


>gi|325567670|ref|ZP_08144337.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
 gi|325159103|gb|EGC71249.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
          Length = 402

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 115/219 (52%), Gaps = 3/219 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S   +  +Y       +  + +
Sbjct: 163 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDRQYHS-EEELLKYTHTAYVKAKQMKS 221

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+ +   V    + +N     +  L+ ++      +     I+I+  +  +      
Sbjct: 222 LVDDLFEYTKVRQPSVPINVMEFDMAQLVEQLAADFELEASRKGIKIETYTRPEHIEMDG 281

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L+++F+ +LSNA+ +      + ++  +   + I +VKNNG  IP+    S+F+RF
Sbjct: 282 DTEKLVRVFNNLLSNALKYGKGADKIRMEVEKVGTEAILTVKNNGQMIPKQALDSLFDRF 341

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             V  +   +  G GLGL+I +S + LHGG++   S+ E
Sbjct: 342 YRVEESRSQETGGTGLGLAIAQSIVALHGGYIYAKSTPE 380


>gi|308126506|ref|ZP_05910586.2| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308108483|gb|EFO46023.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 780

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S    L  +Q ++
Sbjct: 261 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS---PLTEEQRKH 317

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 318 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 377

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    DF   I  V++
Sbjct: 378 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 437

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 438 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 496

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 497 STFTVSIHVP 506


>gi|302871748|ref|YP_003840384.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574607|gb|ADL42398.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 467

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN         +++ + +   +TEK E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + +N S   +  +
Sbjct: 269 VEGILDRTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINVNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    ADR  + ++   +L NA+ ++  G  + +
Sbjct: 327 IAEELIKFEKRIEEKEIDVSLQVDEEL-VVKADRDLISRVIHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF   +  R    GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGV 781
            ++ +  S+EGV
Sbjct: 446 QNIWV-ESEEGV 456


>gi|239993130|ref|ZP_04713654.1| PAS sensor signal transduction histidine kinase [Alteromonas
           macleodii ATCC 27126]
          Length = 943

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 128/242 (52%), Gaps = 10/242 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D+ R   A+    +AL++AD  K+ F+  +++ELR+PL  I    ++L++       +++
Sbjct: 555 DTTRERNAI----DALQEADRRKDEFLATLAHELRNPLAPIRNALEILQSDDYS--QNQK 608

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+    +    T ++ LV+D++D++ +  G ++++   + L ++L+   ++I   + E  
Sbjct: 609 SEAFGRVERQVTQMIRLVDDLMDVSRITRGKIRIHRKPVNLCEILDTAIETIQPLIDEKQ 668

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             + V    +      D  RL QIFS I++NA  ++  G  + +  +  +G    +VK+N
Sbjct: 669 HTLLVEKVAEPVWVNGDLIRLSQIFSNIINNAAKYTPPGGNIEVCISTCDGKVTIAVKDN 728

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS--DEGVT 782
           G  IP    KSVF+ F  V  A    + G+G+GL++V+    LH G V++ S   D+G T
Sbjct: 729 GEGIPAGKLKSVFDMFTQVDGALERSQGGLGIGLTLVKKLTELHDGTVNVQSDGVDKGTT 788

Query: 783 TI 784
            I
Sbjct: 789 FI 790


>gi|237717986|ref|ZP_04548467.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
 gi|229452627|gb|EEO58418.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
          Length = 482

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 118/216 (54%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P+  I+    LL+  ++G+LN +Q Q  + I  +S  LL
Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG ++         +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 314 SITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   VI+ A +D       V++ G  I     KS+F+
Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGIDPRYHKSIFD 433

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468


>gi|150017918|ref|YP_001310172.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904383|gb|ABR35216.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1024

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 131/539 (24%), Positives = 240/539 (44%), Gaps = 87/539 (16%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL-WEIDLA------FLATN--PS 351
           + +Q      I+ N++  +   D+   +   N S  +  + IDLA      FL      S
Sbjct: 369 IEEQKNKLEAIIRNMSEGLFTIDKEGNINILNSSAKDFFYNIDLANKISENFLKVKFYDS 428

Query: 352 NDELLEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-- 408
           ND +++        PE L +++  K    + Y+ +   K       G   H  V+ +P  
Sbjct: 429 NDNIIK--------PENLPSYRVLKGEKINEYRMTLKRK-------GLEYHFNVSGSPLY 473

Query: 409 -RGGTIWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAF 463
              G I      T  V  +   NT++K+Q +     I+++S+ + +   +G+I L N   
Sbjct: 474 DEDGDIVKALLCTRNVTEQVNSNTIIKMQKKQLEAVIENISDAIYIADKEGKIILMNAEG 533

Query: 464 RSLWK-------------TEENRLSPGT--HIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           R L               T++   + G   H+ N++  C+      +       II   D
Sbjct: 534 RGLLSDYYAVKNADDFNITKQAFDTSGNEIHVENLSLKCAL---RGEKIKNRTIIIKRSD 590

Query: 509 DERKSLQGTLELLSDSVLEYS---IIPLPNAQTMLTFVNVTDSVRAERALTEKN---EAL 562
            E      T+ + S  + + S   I+ L        + ++TD    E+ + EK    E L
Sbjct: 591 KEL-----TIRVNSTPIYDTSGNLIMALA------CYHDITDLAEKEKIIVEKYRQLEVL 639

Query: 563 RK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           ++    A++IK+ F+ ++S+E+R+P+  I G   LL+ +    ++ +QS+Y+  +  S  
Sbjct: 640 KEEAEIANKIKSLFLDNMSHEIRTPMNGIFGTIQLLEKT---PMSEEQSKYITLLKNSGN 696

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++N+ILD++ ++AGI KLN     L  + +++  ++    +   + I+   D    
Sbjct: 697 KLLTIINNILDISKIEAGIHKLNDGKFALKKITDDIYTNLLESGNSKGLEIRYYFDPN-A 755

Query: 679 SFVA--DRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI---FSVKNNGSSIP 731
            F+A  D  +L QI   ++SNA+ F+ KG  S  + K + DN D++   F++ + G  I 
Sbjct: 756 EFIAIGDELKLKQILDNLISNAVKFTEKGYISFRVTKVSSDN-DYVKIKFTIADTGIGID 814

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT-TINC 786
           E     +F  F        ++  G GLGLSI +    +  G++S  S+  EG T T  C
Sbjct: 815 ERFKSKIFGIFSQGDISVNKKYTGTGLGLSISKQLAMMMNGNISFESTLGEGSTFTFTC 873


>gi|298483120|ref|ZP_07001300.1| two-component sensor histidine kinase [Bacteroides sp. D22]
 gi|298270637|gb|EFI12218.1| two-component sensor histidine kinase [Bacteroides sp. D22]
          Length = 482

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P+  I+    LL+  ++G+LN +Q Q  + I  +S  LL
Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG ++L        +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 314 SITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   V++ A +D       V++ G  I     KS+F+
Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGIDPRYHKSIFD 433

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468


>gi|291523440|emb|CBK81733.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 986

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 140/262 (53%), Gaps = 15/262 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   + T   +  +AL+E   A   A+  K+ F+ ++S+++R+P+  IIGFT  L  S 
Sbjct: 444 ILVMSDRTSDWKMNQALSEAVHAAETANRAKSIFLSNMSHDIRTPMNAIIGFT-TLAVSN 502

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +     +   Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+++K  I
Sbjct: 503 IDD-RKRVRDYLGKILSSSNHLLSLINDILDMSRIESGKLHLEETEVSLSDVLHDLKTII 561

Query: 659 ATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           + ++H   + + + + D        D+ RL Q+   +LSNA+ F+  G TV ++  +  G
Sbjct: 562 SGQIHAKQLELYMDAMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQCPG 621

Query: 718 D------FIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINL 767
                  +   VK+NG  + ++  + +F+ F     S   R Q  G GLG++I ++ +N+
Sbjct: 622 TVKGSELYEIRVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQ--GTGLGMAITKNIVNM 679

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG + + +     T    R+P
Sbjct: 680 MGGTIEVQTEQGKGTEFIVRLP 701


>gi|293395210|ref|ZP_06639496.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582]
 gi|291422387|gb|EFE95630.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582]
          Length = 930

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 133/256 (51%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 418 AICVLVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK 477

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L     + V  ++ SS +LL +++DILD + +++  +K+        +++  +  +
Sbjct: 478 ---ALPEGVDRLVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGN 534

Query: 658 IATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + +  + +    +  +   ++ D  RL Q+ S +L+NA+ F+  G  ++   AR  
Sbjct: 535 YLPLVVKKRLGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTGCIILQVTAR-- 592

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           G ++ FSV++ G  IPE     +F+ F       QR  +G GLGL+I E  IN+  G ++
Sbjct: 593 GSYLEFSVRDTGVGIPEKEISRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINMMDGDIA 652

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +  + RIP
Sbjct: 653 VESEPGLGSMFSIRIP 668


>gi|262408173|ref|ZP_06084720.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|294806731|ref|ZP_06765558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|262353725|gb|EEZ02818.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|294446013|gb|EFG14653.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1365

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592
            +L FV      RA+  +  + E +   K +EI   K  F  ++S+ELR+PL+ I+    +
Sbjct: 802  LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 861

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  S L     +Q   ++Y+  +   LL++VN +LD    +AG M ++ + + + +LL 
Sbjct: 862  LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 919

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +          +  I   + SD +   F ADR  +  I   +LSNA  F+  G ++ L  
Sbjct: 920  DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 979

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +   + F+V+++G  +  +    +F RF      GQR+G G+GLS+V+  +  H G +
Sbjct: 980  WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1037

Query: 773  SISSSDEGVTTINCRIPS 790
            +++S     T     +P+
Sbjct: 1038 TVASEPAQYTEFKVTLPA 1055


>gi|209695978|ref|YP_002263908.1| aerobic respiration control sensor protein ArcB [Aliivibrio
           salmonicida LFI1238]
 gi|208009931|emb|CAQ80244.1| response regulator, aerobic respiration control sensor protein ArcB
           [Aliivibrio salmonicida LFI1238]
          Length = 788

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 12/225 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL KA   K +F+  +S+ELR+PL  I+G + +L  ++   L+ +Q  Y+  I+ S+  
Sbjct: 274 EALEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR---LDDEQHNYMRTINVSAIT 330

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L N+ NDI+D+   D   ++L    +     + E++        +  +R  +     L +
Sbjct: 331 LGNIFNDIIDMDKFDRRRLELLPKPLDFISFVTEMENISGLMAEQKGLRFDLERLTSLPA 390

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKNNGSSIPEDMC 735
            +  D  RL Q+   ++ NA  F+ +G  V+  +A    DN D  F V+++G  IPE   
Sbjct: 391 HICVDSTRLRQVLWNLIGNATKFTKEGGVVMSVSADIHGDNADITFEVEDSGIGIPESEL 450

Query: 736 KSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISS 776
           ++VF  +     +G+      G G+GL++ +  INL GG ++++S
Sbjct: 451 ENVFTMYY-QVKQGKDNLHAVGTGIGLAVSKELINLMGGDITVTS 494


>gi|59712729|ref|YP_205505.1| aerobic respiration control sensor protein ArcB [Vibrio fischeri
           ES114]
 gi|59480830|gb|AAW86617.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Vibrio fischeri ES114]
          Length = 788

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 127/244 (52%), Gaps = 16/244 (6%)

Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ E   AL+KA   K +F+  +S+ELR+PL  I+G + +L  S+   L+ +Q  Y
Sbjct: 264 RNITERKEYEDALQKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSR---LDDEQHNY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I+ S+  L N+ NDI+D+   D   ++L    +     + E++        +  +R 
Sbjct: 321 MRTINVSAITLGNIFNDIIDMDKFDRRKLELFPKPLDFISFVTEMENISGLMAEQKGLRF 380

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725
            +     L   ++ D  RL Q+   ++ NA  F+ +G  V+  +A   +D+ +  F +++
Sbjct: 381 DLERLTDLPPHISVDSTRLRQVLWNLVGNATKFTKEGGVVMSVSADIHQDSAEITFEIED 440

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSS-DEG 780
            G  IPE+  ++VF  +     +G+      G G+GL++ +  INL GG ++++S  D G
Sbjct: 441 TGIGIPEEELENVFAMYY-QVKQGKDNLHAVGTGIGLAVSKELINLMGGDITVTSEVDFG 499

Query: 781 VTTI 784
            T I
Sbjct: 500 STFI 503


>gi|86147779|ref|ZP_01066086.1| probable composite two component regulatory (sensor histidine kinase
            and response regulator hybrid) transcription regulator
            [Vibrio sp. MED222]
 gi|85834417|gb|EAQ52568.1| probable composite two component regulatory (sensor histidine kinase
            and response regulator hybrid) transcription regulator
            [Vibrio sp. MED222]
          Length = 1430

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 134/260 (51%), Gaps = 14/260 (5%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
               ++T+  + +  LT+  ++   A E K+ F+ ++S+E+R+PL  I+   +L +  ++G
Sbjct: 773  VLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVG 832

Query: 601  SLNSKQSQYVEY-ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 + Q +   +S S+  LL++VNDILD + ++AG + L+Y    L+ L   V Q  A
Sbjct: 833  ----YEVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQA 888

Query: 660  TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAAR 714
             + H   ++ K   D +L   V  D  R+ Q+ + +LSNA+ F+  G    +  +L    
Sbjct: 889  RQAHAKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFTEYGTVGLAAKLLDLDG 948

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
            +     F V ++G  I E+  +++F  FV  A  G  R   G GLGL+I +  I   GG 
Sbjct: 949  EQQQICFEVFDSGIGISEEHIRNLFQPFV-QADEGTTRKYGGSGLGLTISKQLIEQMGGS 1007

Query: 772  VSISSSDEGVTTINCRIPSK 791
            ++++S     +T +  +P K
Sbjct: 1008 LNVTSKINIGSTFSITLPLK 1027


>gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 774

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 126/248 (50%), Gaps = 18/248 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V++  R   AL    +    A + K+SF+  +S+E+R+P+  ++G  +LL+++   +L 
Sbjct: 213 DVSEQHRVNAALKAAQQEAEVASKSKSSFLAMMSHEIRTPMNALLGMAELLEST---ALT 269

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V  I +S   LL ++NDILD + V++G + L    + L + + +V    + +  
Sbjct: 270 VQQKEFVSIIRSSGKTLLTIINDILDFSKVESGNLVLEEGYLDLYECIEDVLILFSNQAD 329

Query: 664 ENNIRI-KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------L 710
           E ++ +  ++    + + F  D  R+ QI S ++SN++ F+ KG   I           L
Sbjct: 330 EKSLMLSSLVEPATMPTVFTGDPVRMRQILSNLISNSIKFTKKGEISIHVTISPIEAEAL 389

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
              R      F+VK+ G  IP+     +F  F  V ++   +  G GLGLSI +  + L 
Sbjct: 390 SEKRSYYQLQFAVKDTGIGIPKHKLDKLFKPFSQVDSSVTRKHGGTGLGLSICKRLVELM 449

Query: 769 GGHVSISS 776
           GG + + S
Sbjct: 450 GGQMWVES 457


>gi|171060781|ref|YP_001793130.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778226|gb|ACB36365.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 801

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V++S +A RAL         A+  K+ F+ ++S+E+R+PL  +IG T LL  +    ++
Sbjct: 129 DVSESRQARRALERAKAEAEAAERAKSLFLANMSHEIRTPLNAVIGMTTLLMDTP---MS 185

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  +   I AS   LL ++NDILD +  D G +++      L   + +    +A +  
Sbjct: 186 DEQLDFARTIRASGETLLGVINDILDFSKADVGKLEIEQQRFDLRRCVEDALDLVAPRAL 245

Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGD-- 718
           E  + +  +I DG   + V D  R+ QI + +LSNA+ F+ +G  +++      D GD  
Sbjct: 246 EKRLNLAYLIEDGTPENLVGDVTRIRQILANLLSNAVKFTHQGEVLVIIDSEPVDAGDGP 305

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F+V+++G  I  +    +F  F        R+  G GLGL+I +    L GG VS
Sbjct: 306 LHRIHFAVQDSGIGIAAEHLPRLFQSFTQVDASTTRKYGGTGLGLAISKRLAELMGGTVS 365

Query: 774 ISS 776
           + S
Sbjct: 366 VQS 368


>gi|160935404|ref|ZP_02082786.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441762|gb|EDP19462.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC
           BAA-613]
          Length = 948

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 117/226 (51%), Gaps = 11/226 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+ EA  +A   K  F+  +S+E+R+P+  I+G +DL  TS +  +  +  + +  I +S
Sbjct: 558 ERAEAANRA---KGEFLSRMSHEIRTPMNAIVGLSDL--TSMMDDVPEQVRENLGKIRSS 612

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LL L++DILD++ +++G M ++     +N  + E++  +  +     +   V  D +
Sbjct: 613 SQYLLRLISDILDMSRIESGKMTVSNEAFSMNRAVEELEDMLTAEATRRGLEFTVEKDVE 672

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIP 731
             + + D  RL Q+ + ++SNA  F+  G ++I++  R         + F V +NG  I 
Sbjct: 673 NRTLMGDVIRLQQVLTNLVSNAFKFTPAGGSIIMRVTRTKSTNQQVIYKFQVIDNGVGIS 732

Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  K VF  F     +  + +G GLGL+I  + + L GG + + S
Sbjct: 733 VENQKRVFGAFEQVGPNYSKSQGTGLGLTISRTIVGLMGGELKLKS 778


>gi|83954602|ref|ZP_00963313.1| sensory transduction histidine kinase [Sulfitobacter sp. NAS-14.1]
 gi|83840886|gb|EAP80057.1| sensory transduction histidine kinase [Sulfitobacter sp. NAS-14.1]
          Length = 798

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 20/263 (7%)

Query: 546 TDSVRAERALTEKNEALR------------KADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           +D+V  ERA  +   ALR            K +++K+ FV  VS+ELR+PLT+I G   L
Sbjct: 532 SDAVVVERA--KNGRALRMLGIQIDITESNKLEQMKHDFVATVSHELRTPLTSIKGALGL 589

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+       ++   + V+  +A+   L+ LVNDILD+  ++AG M +      L D++  
Sbjct: 590 LEAQTQDDPDAGAVRLVQIATANCDRLVALVNDILDMEKINAGSMTVVPKPEKLGDIVTL 649

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + +     E  + I V +       + D+ R++Q+ + +LSNA  F+   + V +  A
Sbjct: 650 AAEQVEPYASEWKVEIDVDTPDPDHHVLTDKNRIMQVLTNLLSNACKFAYPETAVTVTTA 709

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                   SV N G+ I ++  + +F  F     ++  QR G GLGL+I    +   GG 
Sbjct: 710 PVGDMTKISVTNLGNGISKEFRERIFQPFSQAEASNTRQRGGTGLGLNISRHLVEAMGGE 769

Query: 772 VSISS--SDEGVTTINCRIPSKE 792
           +   S   +E V    C  PS E
Sbjct: 770 IGFDSVPGEETVFWFTC--PSTE 790


>gi|323976628|gb|EGB71716.1| TMAO reductase sytem sensor TorS [Escherichia coli TW10509]
          Length = 904

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR +  I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLVTEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPSKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|253580374|ref|ZP_04857640.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848467|gb|EES76431.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 985

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 143/264 (54%), Gaps = 19/264 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   + T   +  +AL+E   A   A++ K++F+ ++S+++R+P+  IIGFT L     
Sbjct: 444 ILVLSDRTSDRKMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTL----A 499

Query: 599 LGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + +++ K+    Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+++L+++K 
Sbjct: 500 VSNIDDKERVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKT 559

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            I+ ++H   + + + + D        D+ RL Q+   +LSNA+ F+  G TV ++    
Sbjct: 560 IISGQIHAKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRLREY 619

Query: 716 NGD------FIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFI 765
            G       +   VK+NG  + +   + +F+ F     S   R Q  G GLG++I ++ +
Sbjct: 620 PGTQRGCELYEIRVKDNGIGMSQKFVQKIFSPFERERTSTVSRTQ--GTGLGMAITKNIV 677

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
           ++ GG + + +     T    R+P
Sbjct: 678 DMMGGTIEVQTEQGKGTEFIIRLP 701


>gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 1205

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 128/275 (46%), Gaps = 15/275 (5%)

Query: 529 SIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           S+  L NA+  LT       ++T+  R E  L    E    A+  K  F+  +S+E+R+P
Sbjct: 514 SVTGLTNAEGALTGFLGIAADITERRRFENELRMAKEQAESANRAKGEFLATMSHEIRTP 573

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  IIG + LL  +K   L S Q   V+ I  S   L++++ DILD + ++A  + L   
Sbjct: 574 MNGIIGMSGLLLETK---LESSQRDMVDAIRTSGEALMDIIEDILDFSKIEARRLDLVEE 630

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
           T  L+ +++ V   +  K+    + + VI D  +  S   D  RL QI   ++ NA  F+
Sbjct: 631 TFSLDAVIDGVVDLLNHKIQSKGLTMGVILDPDVPLSMRGDAGRLRQILFNLMGNASKFT 690

Query: 703 SKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            +G   + +  AR  G      F+V + G  +     + +F  F        RR  G GL
Sbjct: 691 DEGEVNLFISVARGPGGNNMLEFTVADTGIGMTPQQIERLFQPFSQVDSSSTRRFGGTGL 750

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL I +  + + GG + + S+    +    R+P++
Sbjct: 751 GLVISKRLVEMMGGAIHVESTPGKGSRFFFRLPAR 785


>gi|153800850|ref|ZP_01955436.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
 gi|124123560|gb|EAY42303.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
          Length = 649

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 121/218 (55%), Gaps = 8/218 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L + Q  YV+ I+ S   LL +
Sbjct: 130 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 186

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 187 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 246

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 247 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 306

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F + A  G+R+  G GLGL+I    +   GG + ++S 
Sbjct: 307 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQ 343


>gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 1114

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 5/227 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + +KN+ L+ AD++K+ F+   S+ELR+PL  ++G  + L     G L   Q + +E 
Sbjct: 427 KIIQQKNDELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPLQDPQRRQLEM 486

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   L NLV+D+LD   +  G + ++   I L+  +  V +  +  +    +RI   
Sbjct: 487 LINSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQ 546

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L    AD QRL Q+   ++ NA+ ++S+G  +I+ A          V + G  IP 
Sbjct: 547 IPADLPLVDADEQRLEQVLYNLVGNAIKYTSEGK-IIISATVLEQQLRVQVVDTGQGIPS 605

Query: 733 DMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISS 776
           +  + +F   +  A+ G    R+G GLGLSI    I L GG + +SS
Sbjct: 606 EQLEHIFEPLI-QANSGSANYRQGAGLGLSISRQLIELMGGRLYVSS 651


>gi|312891334|ref|ZP_07750852.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311296195|gb|EFQ73346.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 471

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 67/365 (18%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSL-------------W---------KTEENRLSPGTHIR 481
           SEG+     DG+I  S+P+ +++             W         K  E      +H  
Sbjct: 140 SEGIVTMNVDGKIIYSSPSVQNIIGYTDEEFIHLPTWQLLHEDEASKVREQFFRFASHPN 199

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                  R  +++  W    + +T+  DER                      P    +  
Sbjct: 200 KTLTIIHRMKHKNGNWIWIESKMTNLLDER----------------------PINAVIAN 237

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F  VT     ER L EK         +K  F+   S+EL++PLT++  +T +L+     S
Sbjct: 238 FTEVT-----ERVLNEK---------LKEDFIGIASHELKTPLTSLKAYTQVLQHRFKNS 283

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--A 659
            +      +  I    T ++ ++ ++LD+ T+    + L+   I LN L+ E+  +I   
Sbjct: 284 EDETSLNIINKIEHQVTRVVQMITNLLDVTTLQEKKLNLHIRDIDLNLLVTEIADAIQQT 343

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           TK+H    RI ++    L +  ADR+RL Q+ S ++SNA+ +S     V +    +N   
Sbjct: 344 TKVH----RI-ILQLAPLPTIPADRERLAQVISNMISNAIKYSPNADAVQVSTRIENDRV 398

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           IFSV ++G  I       VF RF  ++  +   +G+GLGL I    +  HGG +  +S +
Sbjct: 399 IFSVLDHGIGISPSELNQVFERFFRADGAKKSFQGLGLGLFICAQILEQHGGEIGATSKE 458

Query: 779 -EGVT 782
            EG T
Sbjct: 459 GEGST 463


>gi|237712780|ref|ZP_04543261.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262409729|ref|ZP_06086267.1| phosphate regulon sensor kinase PhoR [Bacteroides sp. 2_1_22]
 gi|294808001|ref|ZP_06766778.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229447192|gb|EEO52983.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262352382|gb|EEZ01484.1| phosphate regulon sensor kinase PhoR [Bacteroides sp. 2_1_22]
 gi|294444814|gb|EFG13504.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295084583|emb|CBK66106.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 482

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P+  I+    LL+  ++G+LN +Q Q  + I  +S  LL
Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG ++L        +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 314 SITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   V++ A +D       V++ G  I     KS+F+
Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGIDPRYHKSIFD 433

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468


>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1786

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +++ V++T+       L    E    A + K  F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +L   + KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++   
Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128

Query: 658  IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
             + K     I +       +  + + D  RL Q+   +++NA+ F+ +G  +    +++ 
Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              D+    FSV+++G  + E     +F  F        R+  G GLGL+I +  + L GG
Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248

Query: 771  HVSISS 776
             + + S
Sbjct: 1249 KIGVES 1254


>gi|78186193|ref|YP_374236.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78166095|gb|ABB23193.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 967

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 14/224 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+ ++S+E+R+P+  +IG  DLL  +    L+ +Q +YV+ I +S   LL ++NDIL
Sbjct: 316 KGQFLANMSHEIRTPMNGVIGMADLLLET---DLDQEQQKYVQTIISSGRNLLKIINDIL 372

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQR 686
           D + ++AG ++L +    L +LL E+   +  +     +   + +  DG       D QR
Sbjct: 373 DFSKIEAGRLELEHEEFELAELLEELGCMLGPEAQAAGLELTLSIAPDGPT-RLKGDPQR 431

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FSVKNNGSSIPEDMCKSVFNR 741
           L Q+   +L NA+ F+ +G  VIL++       +     FSV+++G  IP+D   S+F  
Sbjct: 432 LRQVLVNLLGNAVKFTHEGGEVILESTVQKETELYAVVRFSVRDSGIGIPQDRIDSIFEP 491

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           F        RR  G GLGLSI    +   GG +++ S+ DEG T
Sbjct: 492 FSQVDGSSVRRYGGTGLGLSISNHLVGRMGGRINVQSTLDEGST 535


>gi|325289943|ref|YP_004266124.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965344|gb|ADY56123.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 464

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 3/229 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K +++KN F+  VS+ELR+PLT+I+G+   L+  +    +  +   +  I+  S  L ++
Sbjct: 235 KKEQLKNDFISSVSHELRTPLTSIMGWAITLQNEQFQQKDMLKDG-LNIIAKESERLTHM 293

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G +KL+   I +  L+  + + +  +    NI   +     L   V+D
Sbjct: 294 VEELLDFSKFVSGRIKLHNEPIHIVHLMEHIHKQLTPRAVRENINFSLCCPEDLPCLVSD 353

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+F  IL NA +F+  G +++LKA   + +  F++ ++G  I  +    V  +F 
Sbjct: 354 INRLKQLFINILDNAFNFTPAGGSIMLKAENFDKEIRFTISDSGCGISTEELPMVKEKFY 413

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               +  R   G+GLSI E  + L  G + I+S  +  TT+   +P  E
Sbjct: 414 KG--KSSRSKNGIGLSICEEIVVLMKGQLEINSELDQGTTVRITLPQGE 460


>gi|294634414|ref|ZP_06712950.1| TMAO reductase sytem sensor TorS [Edwardsiella tarda ATCC 23685]
 gi|291092124|gb|EFE24685.1| TMAO reductase sytem sensor TorS [Edwardsiella tarda ATCC 23685]
          Length = 932

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 118/224 (52%), Gaps = 11/224 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +   A  KAD  K++F+  +S+E+R+PL  I+G   LL       L+ +   YV+ I+ S
Sbjct: 433 QARAAAEKADNAKSAFLAAMSHEIRTPLHGILGTAQLLAGQP---LSPRCRDYVQAINDS 489

Query: 617 STILLNLVNDILDLATVDAG--IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              LL ++ND+LD + ++AG   + LN        LL+ V +    ++ +  +R++    
Sbjct: 490 GESLLAVLNDVLDYSAIEAGSHSVALNDEPFAPRQLLDSVLRLAEGRLQQRPLRLEHDYA 549

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L +++  D +R+ QI   +L+NA+ F+ +G  ++L++  D   +  +V+++G  I   
Sbjct: 550 AALPAWLQGDPRRIRQIVMNLLNNALRFTERG-VIVLQSGCDQTQWWIAVQDSGCGIDPA 608

Query: 734 MCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              ++F  FV  +A RG   G GLGL+I         G +++SS
Sbjct: 609 QQAAIFQPFVQLSARRG---GTGLGLAICRGLAQAMAGSLTVSS 649


>gi|256005028|ref|ZP_05429999.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|255990996|gb|EEU01107.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
          Length = 424

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 22/241 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTI 619
           +RK ++I+  FV +V++EL++P+T+I GF + LK    G++N+     +++E I   +  
Sbjct: 194 VRKLEQIRTEFVSNVTHELKTPITSIRGFIETLKN---GAMNNPVVAERFLEIIDIEAER 250

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMH---ENNIRIKVIS 673
           L  L+NDIL L+ ++  +   N     L  ++++   V Q+IA +      NN+R +V+ 
Sbjct: 251 LHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL- 309

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                   A+  R+ Q+   ++ N + ++ +  +V +   R++G  + SVK+ G  IP  
Sbjct: 310 ------MKANINRMKQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSA 363

Query: 734 MCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +F RF     +G+ RG+   GLGLSIV+  +NL+ G + ++S     T    +IP 
Sbjct: 364 HIPRIFERFYR-VDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIPC 422

Query: 791 K 791
           +
Sbjct: 423 Q 423


>gi|254294725|ref|YP_003060748.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254043256|gb|ACT60051.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 859

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 126/249 (50%), Gaps = 18/249 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA     +  RK  E+K+ F+ ++S+E+R+P++ ++G T  L+ +    L  +Q++ V  
Sbjct: 472 RAAIASRDKARKLSEVKSRFLANMSHEVRTPMSGVLGLTSALEQT---PLTKEQNELVVL 528

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   ++N+++DILD A +D   + +       N+LL+          HE    +++I
Sbjct: 529 IAQSGAYMVNILDDILDFAQIDRDNITIRIDAFSPNELLSSTYAFFQKNTHEAG--LELI 586

Query: 673 SDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FS 722
            D K  +    + D +R+ QI   ++SNA+ F+  G  + L+A     D +       F 
Sbjct: 587 LDSKFQNELVTLGDEKRIRQILFNLISNAIKFTPNGQ-ITLRAWCTQSDQVDTQCELHFE 645

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  + E   +++F+ F       +RR  G+GLGLSI +  ++  GG +S++S    
Sbjct: 646 VSDTGIGMDEKQMENIFDPFAQVDMTKRRRYGGLGLGLSICKQLLDAMGGAISVTSIPGS 705

Query: 781 VTTINCRIP 789
            T  +  +P
Sbjct: 706 GTNFSFYVP 714


>gi|291287635|ref|YP_003504451.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884795|gb|ADD68495.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 1067

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 119/224 (53%), Gaps = 11/224 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+E K+ F+  +S+E+R+P+  ++G + L+  ++L     KQ  Y+  I +S+ +LL +V
Sbjct: 417 ANEAKSEFLASMSHEIRTPMNAVLGLSYLMMQTEL---TGKQYDYISKIRSSANLLLEIV 473

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VAD 683
           ND+LD + ++AG ++L    + L D +  +   I   + + N+ +++  D  +  + V D
Sbjct: 474 NDVLDFSKIEAGKLELETDVMNLKDNIKRIAGIIEVTVSKKNVSVQLEIDENIPDYLVGD 533

Query: 684 RQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             R+ Q+ + + +NA  F+ +G    S  +L   ++      +V + G  IP D    +F
Sbjct: 534 SLRITQVLNNLATNAAKFTEQGHIEISAFLLTKNKNYAKIRITVSDTGIGIPTDKIPILF 593

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EG 780
           + F     + Q++  G GLGLSI +  +N     +++ S + EG
Sbjct: 594 DSFTQVKRKNQKKQSGSGLGLSISKKILNAMESDITVESKEGEG 637


>gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1177

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 123/250 (49%), Gaps = 7/250 (2%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T  +R E+ L +  E    A+  K+ F+  +S+E+R+P+  +IG  ++L  +    LN
Sbjct: 767  DITQRLRVEQELQQAKEDAEAANRSKSEFLAAMSHEIRTPMNVVIGMGEILLET---PLN 823

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++Q++Y+  +  +   LL L+++ILDL+ ++AG M L      L+ ++  +      +  
Sbjct: 824  AEQTRYINSMQHAGDALLELIDNILDLSKIEAGRMTLEERAFRLDTMVISITDFFRLQAL 883

Query: 664  ENNIR--IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +N+   +++  + +    + D  R+ Q+   +L NA+ F+ +G   +  +   N     
Sbjct: 884  NHNLSLVVEIAPELEQQYVLGDAGRVRQVLYNLLGNALKFTEEGGVSLHLSLDANQHIHT 943

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
             V + G  I     + +F+ F        RR  G GLGL+I   F  L GG + + S + 
Sbjct: 944  RVSDTGIGIAPQQLERIFDNFTQEDSSVTRRFGGTGLGLAICRRFTELMGGRIWVESIEG 1003

Query: 780  GVTTINCRIP 789
              +T +  +P
Sbjct: 1004 QGSTFHMTLP 1013


>gi|296185127|ref|ZP_06853537.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296049961|gb|EFG89385.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 487

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 552 ERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--- 605
           E  L E N+ L +A   ++++  F  ++S+EL++PLT I+    LL       LN K   
Sbjct: 204 EIKLKESNKMLGEALEYNKLRTEFFSNISHELKTPLTIILSALQLLNEKNSTHLNEKINE 263

Query: 606 --QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             + +Y++ I  +S  LL LVN+I+DL  +D+    +    + + +++     S+A  + 
Sbjct: 264 NTEKKYIDIIKQNSYRLLRLVNNIIDLTKIDSDFFDIQLKNLNVVEVVENTVLSVAEYIK 323

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N I+I   +D +      D  +  +I   ++SNA+ F+     + +         I SV
Sbjct: 324 SNGIKITFDTDVEEKIMAIDIDQFERIILNLISNAIKFAKPEGNIWVSLYDKQDHLIISV 383

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           K++G  IP+D    +F RF  +  +   +  G G+GL+IV+S +  HGG ++++S+
Sbjct: 384 KDDGKGIPKDKLPIIFERFYQIDKSLSRECEGSGVGLAIVKSLVEKHGGKITVNST 439


>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
 gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
          Length = 1547

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 138/266 (51%), Gaps = 16/266 (6%)

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSV----RAERALTEKNEALRKADEIKNSFVQHV 576
             +D ++E+ + PL N  T+  FV+    +    +AE+AL    EA  +A   K+ F+  +
Sbjct: 819  FNDDIIEW-LKPLMN--TVGQFVHGARGIHARQKAEKALVAAKEAAEQAAHAKSDFLAMM 875

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+E+R+PL  ++G   LL  ++L   + +Q + +   S SS  LLN++NDILD + VDAG
Sbjct: 876  SHEIRTPLNGVMGMLSLLNRTQL---SDEQRRKLTIASHSSNTLLNIINDILDFSKVDAG 932

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKIL 695
             ++L      L   L E  +S+A +  E ++ + +  +D        D  R+ Q+ + ++
Sbjct: 933  KIELESIEFNLIAQLEEFSESMAMRAQEKHVELILDTTDINTPMVCGDPGRIRQVLANLV 992

Query: 696  SNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQ 750
             NA+ F+++G  ++   L   +D+  F  SV + G  I  D    +FN F  V  +   +
Sbjct: 993  GNAIKFTAEGEVLVRCALVPQKDDLIFQVSVVDTGIGIENDKLDELFNPFTQVDASTTRE 1052

Query: 751  RRGVGLGLSIVESFINLHGGHVSISS 776
              G GLGL+I +    L GG ++  S
Sbjct: 1053 YGGTGLGLAICKKLCVLMGGDIAAHS 1078


>gi|237714341|ref|ZP_04544822.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229445505|gb|EEO51296.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1343

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 10/258 (3%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592
            +L FV      RA+  +  + E +   K +EI   K  F  ++S+ELR+PL+ I+    +
Sbjct: 780  LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 839

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  S L     +Q   ++Y+  +   LL++VN +LD    +AG M ++ + + + +LL 
Sbjct: 840  LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 897

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +          +  I   + SD +   F ADR  +  I   +LSNA  F+  G ++ L  
Sbjct: 898  DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 957

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +   + F+V+++G  +  +    +F RF      GQR+G G+GLS+V+  +  H G +
Sbjct: 958  WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1015

Query: 773  SISSSDEGVTTINCRIPS 790
            +++S     T     +P+
Sbjct: 1016 TVASEPAQYTEFKVTLPA 1033


>gi|225387688|ref|ZP_03757452.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
           DSM 15981]
 gi|225046210|gb|EEG56456.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
           DSM 15981]
          Length = 810

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 137/276 (49%), Gaps = 24/276 (8%)

Query: 539 MLTFVNVTDSVR---AERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNII 588
           ++ F+++TD       +R L  + EAL+       +A+  K+ F+  +S+E+R+P+  II
Sbjct: 255 LVIFIDITDVTELREMQRKLIAQTEALKDALSVAEQANRAKSDFLSRMSHEIRTPMNAII 314

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T +   +       +    +E I  SS  L+ L+ND+LD++ +DAG M++++    L 
Sbjct: 315 GMTTI--AAAYIEDRKRVEDCLEKIGYSSKHLMTLINDVLDMSKIDAGKMQISHEPFNLE 372

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            ++  +   I  +  +  +   V + D      + D  RL QI   +LSNA+ F+ KG T
Sbjct: 373 TIVESITSIIYPQAEDKGLIFNVPLVDLINTVLIGDGLRLNQILLNLLSNAVKFTPKGGT 432

Query: 708 VILKAA---RDNGD--FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRG-VGLGLSI 760
           V L+     R  G     F+V + G  + +D    +F+ F     + GQ  G  GLG+ I
Sbjct: 433 VRLRIRQMWRRAGRVRLSFAVSDTGIGMSQDFLSHIFDPFEQERVNAGQTYGGTGLGMPI 492

Query: 761 VESFINLHGGHVSI-SSSDEGVT---TINCRIPSKE 792
            ++   L GG +S+ S  D+G T    ++  +P +E
Sbjct: 493 TKNLATLMGGTISVKSKPDQGTTFTVELDFDLPEQE 528


>gi|161367622|ref|NP_286929.2| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7
           EDL933]
 gi|162139802|ref|NP_309175.2| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           Sakai]
 gi|195935251|ref|ZP_03080633.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           EC4024]
 gi|254792250|ref|YP_003077087.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           TW14359]
 gi|291281991|ref|YP_003498809.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str.
           CB9615]
 gi|17368203|sp|P58356|TORS_ECO57 RecName: Full=Sensor protein torS
 gi|254591650|gb|ACT71011.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli O157:H7 str. TW14359]
 gi|290761864|gb|ADD55825.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str.
           CB9615]
          Length = 914

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F+  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|87309428|ref|ZP_01091563.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87287736|gb|EAQ79635.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 499

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 130/235 (55%), Gaps = 14/235 (5%)

Query: 564 KADEIKNS-FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           KA + +N+ FV  VS+E+++PL  I  + +LL     G    +Q+  ++++ I++ +  L
Sbjct: 263 KAIQRRNAEFVSAVSHEMKTPLAGIKAYVELLAD---GEAEDEQTRDEFLQVINSQADRL 319

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGS 679
             L++++L+LA ++AG++ +N     LN+LL E  + +     + NI  I  +S   LG 
Sbjct: 320 QRLIDNLLNLARIEAGVVNVNKKPRSLNELLEEAFRIVHPTAEQKNITLISDLSPMYLGV 379

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738
            V DR  ++Q    +LSNA+ ++     V L++   + + +F V++ G  + PED C  V
Sbjct: 380 LV-DRDMIMQAAINLLSNALKYTPDNGKVTLRSRLQDREVVFEVEDTGVGLSPED-CDRV 437

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIPS 790
           F +F     + Q+   G GLGL + +  + ++HGG ++++S     +T   R+P+
Sbjct: 438 FEKFY-RVKKDQKMASGTGLGLPLAKHIVEDVHGGELNVTSESGVGSTFRIRLPT 491


>gi|301023116|ref|ZP_07186923.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1]
 gi|300397237|gb|EFJ80775.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1]
          Length = 904

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture
            clone pWThLOV]
          Length = 1204

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 12/243 (4%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T+ ++T    AE+AL +K +A   A   K  F+  +S+E+R+PL  +IGF+ LLK S   
Sbjct: 801  TYSDITRLKEAEKALRDK-QAAELASRSKTEFLSRMSHEMRTPLNAMIGFSQLLKLSATN 859

Query: 601  SLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            +  S      Y +++  +   LL L+ND+LDL  V+ G + +N  TI L   + +  + +
Sbjct: 860  AQPSASQVRHYADHMLQAGQHLLALINDVLDLQRVETGQLTINIETISLRRTIEQALELL 919

Query: 659  ATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            A   H + +      D ++   V   AD QRL Q+   I+SNA+ ++     V L     
Sbjct: 920  APLAHASAVSF----DNRIDEDVLVRADAQRLRQVLINIISNAIKYNRPDGVVRLTLGDR 975

Query: 716  NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVS 773
             GD I   +++ G  +  D    +F  F           G GLGL I +  I+   G + 
Sbjct: 976  QGDAIDVLIEDTGEGLRPDQLARLFQPFERLGRETSPIEGTGLGLIIAKRLIDEMKGSIE 1035

Query: 774  ISS 776
            +SS
Sbjct: 1036 VSS 1038


>gi|167582210|ref|ZP_02375084.1| sensor histidine kinase/response regulator [Burkholderia
           thailandensis TXDOH]
          Length = 651

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 32  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 84

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A + H   +R++
Sbjct: 85  SLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSGMLAVQAHRKGLRVR 144

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +GS  +   A    D     + +V +
Sbjct: 145 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGSVSVRVRATGAVDGSVEIVATVVD 204

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  FV  A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 205 TGIGIAADELRRLFTPFV-RAARGARRTESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 263

Query: 783 TINCRI 788
           T   RI
Sbjct: 264 TATARI 269


>gi|298248980|ref|ZP_06972784.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546984|gb|EFH80851.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 981

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 5/235 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+ELR+PL  +   T L++       + + +  +  +  S  
Sbjct: 747 NSARKELEQRKDDFISMASHELRNPLAAVKMQTQLVQKRLERQSHHEAATALSRVEGSVK 806

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ ++LD++ + AG ++     + L+ LL+EV  ++      + I   V+      
Sbjct: 807 QLERLIGELLDVSKIQAGRLEYQQEMVDLDALLHEVADTMQQIHTTHTI---VVRGTAPC 863

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S V D+ RL Q+F+ ++SNA+ +S    TV +  +         V+++G  IP +    +
Sbjct: 864 SLVGDKDRLGQVFTNLISNAIKYSPGAETVEMDLSTSAETVTIRVRDHGLGIPREQRDKI 923

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+RF       QR   G+G+GL IV   +  HGG +++ S     +T    +P +
Sbjct: 924 FDRFYRVTDPKQRAIPGLGMGLYIVAEIVKSHGGTITVESQVGTGSTFTVTLPKR 978


>gi|296533733|ref|ZP_06896283.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
 gi|296265955|gb|EFH12030.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
          Length = 726

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 106/485 (21%), Positives = 200/485 (41%), Gaps = 44/485 (9%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L  L   + ++  ++ L+  N ++  L    +   A+ P  + L E  R A      + 
Sbjct: 239 VLAALPHGVCVYGADQRLRMANAAYDRL----MPEAASRP-GEHLREICRRA------MA 287

Query: 371 WKTWKENIFSVYK-----SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
                E + ++Y+     +   HK   H  +G  +  +    P GG I +  ++T     
Sbjct: 288 GFADDEALEAIYRRQLDFARPAHKRVRH--DGTAISGLTAPLPDGGHISVVSDITALHQA 345

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI---RN 482
           E        +    +D + +GV +F    R+ ++N     +       ++PGT +   R 
Sbjct: 346 EEAARQRAALLQAMVDSMRQGVCLFDRQHRVVVANALAARMIGLAPEEMAPGTPLQTLRR 405

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-------LSDSVLEYSIIPLPN 535
           +      +   +D    +  I         SL+  L+L        +  V+E S  P P+
Sbjct: 406 LQYERGEFGQGADAEGYYEEI---------SLEPGLKLDHFLRTRPNGQVIEMSTDPTPD 456

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +  + +VT+  RA   L        +A+  KN F+  +S+ELR+PL  +IGF++ L 
Sbjct: 457 GGHVRVYTDVTEERRARAELERARAVAEEANAAKNRFLATMSHELRTPLNAVIGFSEALA 516

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G      +++   I  +   LL L+++IL++A   AG +++    + L  +L    
Sbjct: 517 ADPSG---PDTAEFATAIHDAGRHLLALIDEILEVAKAGAGTVRVETRALYLPSVLEGAA 573

Query: 656 QSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-A 713
           + +        I + +      L    A+ +RL Q+   +LSNA+ F+  G  V L+A A
Sbjct: 574 RLMRQSAEAAGITLTLAPPPADLPRARAEERRLRQVLLNLLSNAVKFTPAGGEVALEAEA 633

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
              G     V+++G  I     +  F  FV    +H  +  G GLGL +  +     G  
Sbjct: 634 LPGGAVEIRVRDSGIGIEPGQLERAFEPFVQLETSHARRYGGSGLGLYLARALAQSMGAT 693

Query: 772 VSISS 776
           +++ S
Sbjct: 694 LALES 698


>gi|317151758|ref|YP_004119806.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942009|gb|ADU61060.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 432

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 18/238 (7%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---------------SKLGS 601
           E+   L +A++ K  F+  VS+ELR+PLT+IIGF  +++                 KL  
Sbjct: 176 ERTRELARANKAKTEFLSIVSHELRTPLTSIIGFAKIIRKKLAERVFPAVDRDRDPKLCK 235

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +  + ++ I A    L  L+ND+LDLA ++A  ++     +   + L     S +  
Sbjct: 236 EMDRIGKNIDIIEAEGERLTALINDVLDLAKLEANKVEYRMEPLAPAEFLRPAMDSSSAL 295

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
              + +         L   + DR RL+Q+   + SNA  F+ +GS V  +A         
Sbjct: 296 FQASEVLFLNEVGPDLPQVMGDRHRLIQVMVNLFSNAAKFTRQGS-VTCRAELVGAHLRV 354

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           SV + G+ IP++   S+F++F+        R  G GLGL I    I  H GH+ + S+
Sbjct: 355 SVVDTGAGIPQEQQTSIFDKFIQGQESLTDRPTGTGLGLPICRQIIKDHQGHLWVESA 412


>gi|154303265|ref|XP_001552040.1| hypothetical protein BC1G_09381 [Botryotinia fuckeliana B05.10]
 gi|150854944|gb|EDN30136.1| hypothetical protein BC1G_09381 [Botryotinia fuckeliana B05.10]
          Length = 2129

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 15/223 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I +S++ LL
Sbjct: 1408 LKEAMESKGKFLSNMSHEIRTPLIGISGMVSFLQDT---TLNDEQLDYTNTIQSSASSLL 1464

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            N++NDILDL+ VDAG+MKL+Y       L+ EV + ++T      + +  I D  +   V
Sbjct: 1465 NIINDILDLSKVDAGMMKLSYEWFHTRSLVEEVNEMVSTMAITKRLELNYIVDVDVPEMV 1524

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------FIFSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F++ G          + D           +S+ + G    
Sbjct: 1525 KGDKFRIRQVLLNVIGNAIKFTTVGEVFTRCRVYTDADSPPLVNEIMLEYSIVDTGRGFT 1584

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            ++    +F  F  +  +   Q  G GLGL I    + LH G +
Sbjct: 1585 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVQLHNGKM 1627


>gi|167647393|ref|YP_001685056.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
 gi|167349823|gb|ABZ72558.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
          Length = 844

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 182/389 (46%), Gaps = 51/389 (13%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT---HIRNIAATC------- 487
           + I+ +SE   ++   GR+ + N  +R+++  E   L PG     +   AA         
Sbjct: 455 DAIESVSEAFVLWDRQGRLLMCNRNYRNVFNLEPKLLKPGAPRNEVNRFAALAIKHDQPA 514

Query: 488 --------------------SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                               S       G  + AA IT+  ++ ++ +     L++  L+
Sbjct: 515 PDGAKGVREAELNDGRWIQISERRTAEGGLVMTAADITAIKNQEEARR-----LNEEQLQ 569

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +++  L  +Q  L  +       A +   EK +A   A++ K+ F+ ++S+ELR+PL  I
Sbjct: 570 HAVAGLERSQEQLAEL-------ARKYEMEKVKA-EGANKAKSEFLANMSHELRTPLNAI 621

Query: 588 IGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            GF++++     G L  ++ + Y   I  S   LL L+NDILD++ ++AG M L +  + 
Sbjct: 622 NGFSEIMMNEMFGPLGDQRYKGYSLDIHNSGQHLLALINDILDMSKIEAGKMNLKFEPLS 681

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L D+  +  + +  +     ++++ I    L    AD + + Q+   +LSNA+ F+ +  
Sbjct: 682 LEDVTEDAVRLVRNRAEAAGLKLE-IDFPPLPEVEADYRAVKQVLLNLLSNAIKFTPRAG 740

Query: 707 TVILKAA--RDN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
            ++++A   RD  G+ +  SV + G  I  +    +   F  V + H    +G GLGL++
Sbjct: 741 RIVVRAEVRRDPLGERVRVSVTDTGIGIAAEDLARLARPFEQVESQHAKTTQGTGLGLAL 800

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +S + +H G + ++S+    TT++  +P
Sbjct: 801 TKSLVEMHDGALEMTSTPGEGTTVSFILP 829


>gi|86157319|ref|YP_464104.1| osmosensitive K+ channel signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773830|gb|ABC80667.1| osmosensitive K+ channel signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 902

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 11/236 (4%)

Query: 558 KNEALR-KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  ALR + +E+++  +  VS++LR+PL  I G + LL  + +    + + + V  +   
Sbjct: 655 RRSALRARTEELRSGLLSAVSHDLRTPLAAITGASTLLLDAAVAD-PAVRRELVATVVEE 713

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L  LV+D+LD+  +D+G+++     + L +++      +   +    + I +  D  
Sbjct: 714 AERLERLVSDLLDMTRLDSGVVEPRREWVPLVEVVGAAMNRVERALGNRPVAIALRDDLP 773

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L S   D   + Q+   +L NA  ++  G+ + + A R+ G  +  V + G  IP    +
Sbjct: 774 LLSI--DPILIEQLLVNLLENATKYTPPGTEISVAAVREGGTLVIEVADRGPGIPAGEEE 831

Query: 737 SVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF    HR  R   RGVGLGL I  +    HGG ++ +S   G +     +P
Sbjct: 832 RIFERF----HRAARPGVRGVGLGLPIARAIAQAHGGRLTAASRPGGGSVFRLTLP 883


>gi|294672859|ref|YP_003573475.1| sensory box histidine kinase [Prevotella ruminicola 23]
 gi|294473745|gb|ADE83134.1| sensory box histidine kinase [Prevotella ruminicola 23]
          Length = 925

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 136/270 (50%), Gaps = 12/270 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN--EALR--KADEIKNSFVQHVSYELR 581
           L+++ +P      ++ +  +   +   +A+ EK   E++R  + + +KN+F+ ++S+E+R
Sbjct: 657 LQFNFVPTYKDGQIVEYFGLIRDISDIKAVEEKLALESVRAQEVETVKNAFLHNMSHEIR 716

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  ++GF++L    ++      ++ ++  I  SS  LL L+NDIL L+ +DAG++ ++
Sbjct: 717 TPLNTVVGFSELF---EMDHSPEDEAVFINEIKESSASLLKLINDILFLSRLDAGMITIS 773

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              I L  +      S+     +  +     +  K      D      I +KIL+NA+  
Sbjct: 774 PQPIDLASIFEGRCSSVWDNHRQPGVEYIAQNPFKRLIVEIDEPNASMILNKILTNAIQH 833

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           ++ GS V+ +        I SV++ G  I ++  + +F+RFV+    G   G GLGLSI 
Sbjct: 834 TTSGS-VLARYEFIADRLIVSVEDTGCGIKQEDIEHIFDRFVT----GANNGAGLGLSIC 888

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +   GG + + S++   T +   IP K
Sbjct: 889 HELVEYMGGQIELKSTEGKGTMVWFSIPCK 918


>gi|242278944|ref|YP_002991073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121838|gb|ACS79534.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 659

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  E    A ++K+ F+ ++S+E+R+P+  I+G   LLKT+    L+++Q +YV+Y 
Sbjct: 285 ALLKSKEQAEAASKVKSEFLANMSHEIRTPINGIMGMLQLLKTT---DLDAEQLEYVDYA 341

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             SS+ L +L+ DILDL  V+AG ++L  +   + + ++ ++Q    +  E  + +   I
Sbjct: 342 LKSSSRLSSLLIDILDLTMVEAGQLELQIAPFEIAETIDSIRQLFGQEAREKGLVLNFDI 401

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSS 729
           S     +   D  RL Q+   ++ NA+ F+  G     V L   R     +F V++ G  
Sbjct: 402 SPEVPETVDGDALRLQQVLVNLVGNALKFTEHGRVDVEVFLNDKRAKS-LLFKVRDTGIG 460

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I +D+   +F  F+    +++   +G GLGLSI +  + + GG + +SS
Sbjct: 461 IADDIQDKLFEPFIQGDGSYKRSFQGAGLGLSICKRVLKVMGGEIYVSS 509


>gi|76810007|ref|YP_333196.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
 gi|76579460|gb|ABA48935.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
          Length = 654

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 32  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 84

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 85  GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 144

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +G   +   A D+ D     + ++ +
Sbjct: 145 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 204

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 205 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 263

Query: 783 TINCRI 788
           T   RI
Sbjct: 264 TATARI 269


>gi|330448533|ref|ZP_08312181.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492724|dbj|GAA06678.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1305

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T +   + AL E N     A E K+ F+  +S+E+R+P++ I+   +L++     + 
Sbjct: 648 IDITQAKEQQVALMEANAKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPH---AQ 704

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  Q    +S S   LLN+VND+LD + ++AG + +N S  VL+DL++ + Q  +   
Sbjct: 705 KPELRQIHHNLSQSGLNLLNIVNDVLDFSKIEAGKLNINPSRHVLSDLIHALVQPHSIHA 764

Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717
           ++  +   +  D  +  +++ D  RL Q+ + +L+NA+ F++ G    +  ++K      
Sbjct: 765 NQKEVSFTLWLDPAVAHYLSFDDFRLTQVLNNLLNNAIKFTTMGNIHLAVDVVKETNTEQ 824

Query: 718 DFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              F++ + G  I PED+ + +F  FV       RR  G GLGLSI    + L  G +  
Sbjct: 825 TLAFTIHDTGIGIKPEDLSQ-LFQPFVQVEQSSNRRFSGTGLGLSICYQLVQLMDGDIHA 883

Query: 775 SSSDEGVTTINCRIP 789
           +S     T+    +P
Sbjct: 884 TSEVGKGTSFTVIVP 898


>gi|197335684|ref|YP_002156922.1| aerobic respiration control sensor protein ArcB [Vibrio fischeri
           MJ11]
 gi|197317174|gb|ACH66621.1| aerobic respiration control sensor protein ArcB [Vibrio fischeri
           MJ11]
          Length = 788

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 130/251 (51%), Gaps = 19/251 (7%)

Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ E   AL+KA   K +F+  +S+ELR+PL  I+G + +L  S+   L+ +Q  Y
Sbjct: 264 RNITERKEYEDALQKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSR---LDDEQHNY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I+ S+  L N+ NDI+D+   D   ++L    +     + E++        +  +R 
Sbjct: 321 MRTINVSAITLGNIFNDIIDMDKFDRRKLELFPKPLDFISFVTEMENISGLMAEQKGLRF 380

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725
            +     L   ++ D  RL Q+   ++ NA  F+ +G  V+  +A   +D+ +  F +++
Sbjct: 381 DLERLTDLPPHISVDSTRLRQVLWNLVGNATKFTKEGGVVMSVSADIHQDSAEITFEIED 440

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSS-DEG 780
            G  IPE+  ++VF  +     +G+      G G+GL++ +  INL GG ++++S  D G
Sbjct: 441 TGIGIPEEELENVFAMYY-QVKQGKDNLHAVGTGIGLAVSKELINLMGGDITVTSEVDFG 499

Query: 781 VT---TINCRI 788
            T   TIN  +
Sbjct: 500 STFMVTINVPL 510


>gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 848

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 174/370 (47%), Gaps = 39/370 (10%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL-WKTEENRLSPGTHI--- 480
           ++ +Y TL       +D  S+ + V   D RI+  NP   SL  +  E+ L  G  +   
Sbjct: 233 VQQEYKTL-------MDSASDLILVHDRDLRIRYVNPVVESLAGQPPEHYLGQGIEVIIP 285

Query: 481 -RNIAATCSRYYNE--SDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPN 535
            R +A   + +  +    G D  ++I    D  R  + +Q  L  + D+      + L  
Sbjct: 286 EREVAGVFNSHLRQVLQSGKD--SSISFQLDSVRHKRHMQARLTPVQDAAGSMGSV-LAV 342

Query: 536 AQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            + +  F  + D +R A+R   E N A       K+ F+ ++S+E+R+PL  ++G  + L
Sbjct: 343 VRDITRFKRLEDRLRQAKREAEESNRA-------KSEFLANMSHEIRTPLNAVLGLAERL 395

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 +   ++ +YV  I  S+  LL +++DILDL+ ++AG + ++     L  LL +V
Sbjct: 396 S---FITEPRERDEYVRMIKHSAHALLAIIDDILDLSKIEAGKLDVHEQEFELAALLEKV 452

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--- 710
                 +  E  + + V + +      +AD  +  Q+ + ++SNA+ F+ +GS  I    
Sbjct: 453 VSPYRYQAQEKGLELAVSVGNAVPAWMLADPDKFSQVLTNLVSNAIKFTEEGSVEISVTN 512

Query: 711 --KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
             + +RD G  +  V + G  IP DM   +FN F  + +++     G GLGL+I +  + 
Sbjct: 513 DNRDSRDMG-LLVCVHDTGLGIPWDMQARLFNSFSQLDSSYSKSFGGTGLGLAISKRLVE 571

Query: 767 LHGGHVSISS 776
           + GG + + S
Sbjct: 572 MLGGRIWVES 581


>gi|325925186|ref|ZP_08186599.1| Signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|325544440|gb|EGD15810.1| Signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 719

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 127/248 (51%), Gaps = 17/248 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 166 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 222

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +   I+
Sbjct: 223 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNMILQPQAKTRGLDYAIE 282

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724
           V +D        D   L Q+   +L NA+ F+  G  V+L+ AR +G+        F V+
Sbjct: 283 VATDVP-DLLKGDTGHLRQVLLNLLGNAVKFTEHGH-VLLRVARVSGNGADTMRLRFDVE 340

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG +  + +  G 
Sbjct: 341 DSGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGAIGFAPNPSGG 399

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 400 SVFWFELP 407


>gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gi|300075855|gb|ADJ65254.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 939

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 8/227 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT+++G  D+L  +    L+         IS  S  ++ L
Sbjct: 703 ESERLRNSLLSAISHDLRTPLTSLVGSADVLAAN--ARLDDDARAMARTISEQSQKMVGL 760

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N++LD+A + AG++ LN     L +L     + +A  +    +  ++  +  L     D
Sbjct: 761 MNNLLDMARLQAGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRIAPELPL--LRVD 818

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNGSSIPEDMCKSVF 739
              L ++ + ++ NA+ +S  G+ + + A  ++GD    VK    + G   P  M +  F
Sbjct: 819 AVLLERVLANLVENAIKYSPPGTPIGISAHVEHGDGAPQVKVCVMDQGRGFPPTMTQHAF 878

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +F    +     GVGLGL+I  + I  H G + I+  + G     C
Sbjct: 879 EKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVC 925


>gi|302381628|ref|YP_003817451.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192256|gb|ADK99827.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
          Length = 524

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 20/226 (8%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F++ +S+E+R+PL  +IG   LL  ++L   +  Q  Y E    S+  LL LVND+LD
Sbjct: 24  DPFLRLMSHEMRTPLNGVIGMLGLLTRTRL---DGAQRAYAEAARDSAEHLLGLVNDLLD 80

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRL 687
            A ++AG ++ + + +    L+  V + ++ + H+  + I   V +D      +AD  RL
Sbjct: 81  YARLEAGKLEFDLAPVDPEGLVRGVAELLSPRAHDKGLEIVWSVAADAP--DILADEGRL 138

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF 742
            Q+   +  NA+ F+ +G  V +   R  G        F V + G  IP +    +F  F
Sbjct: 139 RQVLFNLAGNAVKFTDQGG-VRISVERAGGSDTRPTLAFVVDDTGPGIPAEARARIFEEF 197

Query: 743 ----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTT 783
                S+A R    G GLGL++V+      GG V++    D G  T
Sbjct: 198 GHVDASDATR--HGGAGLGLAVVQKLARAMGGAVTVEDRPDAGPDT 241


>gi|189424182|ref|YP_001951359.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189420441|gb|ACD94839.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 770

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER   LT   E    A+  K+ F+  +S+ELR+PL  I+G+  +L+     +L+  Q Q
Sbjct: 290 AERTAELTIAKEQAESANRAKSDFLSSMSHELRTPLNAILGYAQILRLHN--NLSDIQRQ 347

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ +  S   LL L+NDILD+  ++A  M +  +   L  L+ +V      +  E  ++
Sbjct: 348 QLDIMRNSGEHLLTLINDILDVGKIEANKMDVEDAVFDLPALIAQVFNLTKLQAEEKELQ 407

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--SVKN 725
                +  L ++V  D ++L QI   +LSNA+ ++ +GS  +  +    GD +F   V +
Sbjct: 408 FHYEPETPLPAYVHGDERKLRQILLNLLSNAVKYTRRGSVTMRVSYGRAGDGLFRCEVAD 467

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP D    +F  F  ++N  +G R G GLGL+I +  + L  G + + S     +T
Sbjct: 468 TGIGIPADKLGVIFEPFTQLTNDRQG-REGTGLGLNITKRLLTLIQGTMGVESIPGKGST 526

Query: 784 INCRIP 789
               +P
Sbjct: 527 FWLEVP 532


>gi|254830992|ref|ZP_05235647.1| hypothetical protein Lmon1_06518 [Listeria monocytogenes 10403S]
          Length = 459

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELEKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L     ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLSKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D    ++  D + L Q++S +L+NA+ F+ +G  + ++   D  +    V+++G  I +
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDMTNVFVEVQDSGVGISK 398

Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            DM K +F+RF  +N  R +  G  GLGLSI +  I LH G V++ SS E  TT   ++P
Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457


>gi|119387834|ref|YP_918868.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119378409|gb|ABL73172.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 901

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
           L   NE L+  D++K+ F+  V++ELR+PLT+I   T+L L T  +     ++ +++  I
Sbjct: 656 LRAANEKLKSLDQLKDDFMSSVTHELRTPLTSIRALTELMLDTPDIQP--QEREEFLNII 713

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + S  L  LVN +LDLA +++G+ + + + + +  L+    +S A    E    +    
Sbjct: 714 LSESERLSRLVNQVLDLAKIESGMAEWHNTDVDMKALIVAALRSTAELFRERGAEVLADL 773

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSI-P 731
             ++   +AD  RL Q+   +LSNA  F  +G   +  A R  GD  + +V++NG  + P
Sbjct: 774 PEQVPMVLADPDRLTQVLVNLLSNAAKFVPEGRGRVEVALRHRGDELVVTVRDNGPGVAP 833

Query: 732 EDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
           ED   +VF++F      G R  G GLGL I    +   GG + + S
Sbjct: 834 EDQA-AVFDKFRQGGEAGNRPPGTGLGLPISRQIVVNLGGRMWLDS 878


>gi|228956707|ref|ZP_04118494.1| hypothetical protein bthur0005_2470 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802972|gb|EEM49803.1| hypothetical protein bthur0005_2470 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 314

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 119/229 (51%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  E       ++ ++NI+++V+        +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEKLDFSEVTREALIEFLPELSKHNIKLQVLIPESTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   L++I   ++ NA+ +   G T+ ++    + ++   + + G  IP+   +++F R 
Sbjct: 199 DHLSLMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDLQNIFERM 258

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +      G GLGLSI ++ +  +GGH+ + S+    TT    IP
Sbjct: 259 YRSEQSRNSSYGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIP 307


>gi|229058211|ref|ZP_04196599.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
 gi|228720075|gb|EEL71659.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
          Length = 591

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 176/356 (49%), Gaps = 37/356 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWD 498
           +++GV     +G + + NP    F  +W+ E E  LS                  S+  +
Sbjct: 264 MADGVITLNQEGEVVVINPPAEHFLQVWQEEKEVELSKKL--------------PSELVE 309

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           LF  ++ S  ++++ ++  L+  +  VL   + PL N QT      +  +V   R +TE+
Sbjct: 310 LFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYN-QT-----KIRGAVAVLRDMTEE 358

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
               R+ ++++  F+ +VS+ELR+P+  + G+++ +    +     + +++V+ I   S 
Sbjct: 359 ----RRLEKMRQDFIANVSHELRTPMVMLQGYSEAI-LDDIVQTKEEINEFVQIIYDESV 413

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +++ V     + 
Sbjct: 414 RLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQSPIE 473

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            +  D  R+ Q+ + ++ NA+  ++ G  V L     N    F V+++G+ IPE+    +
Sbjct: 474 QYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDIPFL 533

Query: 739 FNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+RF        RG++ G GLGL+I ++ +  H G + +SS     T  +  +P++
Sbjct: 534 FDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTIFSVYLPNR 589


>gi|183179349|ref|ZP_02957560.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|183012760|gb|EDT88060.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
          Length = 740

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   L   +    
Sbjct: 503 LLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---P 559

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+ V   ++ K
Sbjct: 560 LDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLK 619

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V+  + ++ N   
Sbjct: 620 AQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ 679

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
           +   F+VK+ G  I +D    +F+ F    N+   Q  G GLGLSI +  + L GG
Sbjct: 680 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGG 735


>gi|91226808|ref|ZP_01261461.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01]
 gi|269965795|ref|ZP_06179891.1| Aerobic respiration control sensor protein ArcB [Vibrio
           alginolyticus 40B]
 gi|91188939|gb|EAS75223.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01]
 gi|269829593|gb|EEZ83831.1| Aerobic respiration control sensor protein ArcB [Vibrio
           alginolyticus 40B]
          Length = 784

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S    L  +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS---PLTEEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    DF   I  V++
Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEDDFATIIMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IP++    +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 500 STFTVSIHVP 509


>gi|90962135|ref|YP_536051.1| two component system histidine kinase [Lactobacillus salivarius
           UCC118]
 gi|90821329|gb|ABD99968.1| Two component system histidine kinase [Lactobacillus salivarius
           UCC118]
          Length = 492

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 7/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E NE +++ +E +  F    ++E+R+PLT I G  + L    +   + ++S  +E 
Sbjct: 249 QSLRESNEEIKRQEERRRQFFADAAHEMRTPLTTINGLLEGLAYDAIPEESKEKS--IEL 306

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L+ LVN+ LD   + +G ++L+ +   +  +LN + + +  K  +   + ++ 
Sbjct: 307 MRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQLRNKAEQVGDKFELY 366

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  KL  + AD  RL+QI   I  NA+ F+  G  + + A + N + I  + +NG  + E
Sbjct: 367 TPDKLMVY-ADYDRLVQIIFNITQNAIQFTENG-VISISAEKGNEETIIRISDNGIGMNE 424

Query: 733 DMCKSVFNRF--VSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  ++++ R+     + +  + G  GLGLSIV   + LH G V++ S +   TT   R P
Sbjct: 425 EQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTVESKEGKGTTFTLRFP 484

Query: 790 SK 791
           +K
Sbjct: 485 NK 486


>gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 549

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 36/323 (11%)

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM------ 539
           TC +  N     D+    +T+F D    ++G    LS   ++Y   P    + +      
Sbjct: 69  TCKKLKNNPISKDIPIIFMTAFADINHKIKG----LSLGAVDYIPKPFEQEEVLARVRLH 124

Query: 540 LTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTS 597
           L    +T ++  + A L E  E    A++ K+ F+ ++S+ELR+PL  I+G+  +L + +
Sbjct: 125 LKLYFLTKTLAEQNAYLQEAKEKAEVANQAKSEFLANMSHELRTPLNGILGYAQILQRDA 184

Query: 598 KLGS------LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L +      L +KQ + ++ I  S + LL L+NDILDL+ ++AG M L  +   L   L
Sbjct: 185 ALAASKGERNLTAKQLEGLKIIQKSGSHLLTLINDILDLSKIEAGKMALYPTEFNLLTFL 244

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI- 709
            EV   I  +  E NI ++   +  L + V AD +RL Q+   +L NA+ F+ +G+    
Sbjct: 245 EEVVGIIRMRASEKNIVLRFEQNTNLPTGVKADEKRLRQVLINLLDNAVKFTDQGNVTFN 304

Query: 710 -----------LKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RG 753
                      L   +D+        F V + G  I     +++F  F        R  G
Sbjct: 305 VGVIEDQNPTSLDQGKDSQIQHRTIRFEVIDTGIGISPQQLETIFQPFEQTGDSKYRAAG 364

Query: 754 VGLGLSIVESFINLHGGHVSISS 776
            GLGL+I    +   G  +++ S
Sbjct: 365 TGLGLAISRQLVEFMGSQLNVKS 387


>gi|156978233|ref|YP_001449139.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156529827|gb|ABU74912.1| hypothetical protein VIBHAR_07038 [Vibrio harveyi ATCC BAA-1116]
          Length = 641

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 121/219 (55%), Gaps = 10/219 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+P+  IIG   LL  +KL   + +Q  +V  I++SS  L+ ++
Sbjct: 240 ANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTKL---DEQQKDFVSIINSSSNSLMVII 296

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           +DILD + ++AG ++L  +T  L DLL+EV +    K  +  +++    D +L   V  D
Sbjct: 297 DDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPLEVKGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+ S +LSNA+ F+ +G   ++ +      D     F V ++G  I ++  ++VF
Sbjct: 357 MGRLKQVLSNLLSNAVKFTERGHVKLMVSLVSRKTDIASVHFRVVDSGIGIAKENQQTVF 416

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F        R+  G GLGL+I  S + + GG + ++S
Sbjct: 417 EKFQQADGSTTRKYGGTGLGLAICNSLVEVMGGEIRLTS 455


>gi|110833833|ref|YP_692692.1| phosphotransferase-histidine kinase family protein [Alcanivorax
           borkumensis SK2]
 gi|110646944|emb|CAL16420.1| phosphotransferase-histidinkinase, family protein [Alcanivorax
           borkumensis SK2]
          Length = 867

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 10/222 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R   + K+ F+  +S+E+R+PL  +IG  +LL+ +     + +Q +Y+  I ++   L  
Sbjct: 364 RAESQAKSLFLARMSHEIRTPLNGVIGLAELLRETD---PSPRQQEYISLIDSAGRTLTA 420

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
           L+ND+LD A ++AG ++L      L  LL E  Q       +N   + +  D +  S  V
Sbjct: 421 LINDVLDFAKIEAGKLELVEEHFDLPVLLAECVQMFNLPASDNGTLVILDVDPQTPSDVV 480

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKS 737
            D  RL QI   ++ NA+ F+  G  V+ L   R  G+   + FSV + G  + +     
Sbjct: 481 GDAIRLRQILINLVGNAVKFTRNGRVVLSLVCRRQYGEAPLYTFSVADTGIGLSQVEQAQ 540

Query: 738 VFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
           +F RF  ++A+  QR  G GLGLSI    + L GG + + S+
Sbjct: 541 LFQRFTQASANTAQRYGGTGLGLSISRELVELMGGEIHVHSA 582


>gi|94263975|ref|ZP_01287777.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455647|gb|EAT05829.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1048

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 126/243 (51%), Gaps = 12/243 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           F +++    AE+AL    +A   A+  K+ F+ ++S+E+R+P+  +IG + + L+T    
Sbjct: 409 FRDISSQKEAEKALVTARQAAEAANRTKSDFLANMSHEIRTPMNAVIGLSHICLQT---- 464

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  KQ  Y+E +  S+  LL ++NDILDL+ +++G +++      L ++L+ +   +  
Sbjct: 465 ELTPKQRDYLEKVHNSAHSLLGILNDILDLSKIESGRLEVEEIPFNLEEVLDRLHTLVDA 524

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           ++    ++ K+    ++  +   D  RL Q+ + ++ NA+ F+ +G   +  A     + 
Sbjct: 525 RIAAKPLQFKLDLPPEVPVNLRGDPLRLGQVLTNLVGNAVKFTEEGEIAVTVAVVAEAEQ 584

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F+V++NG  + ++ C  +F  F        R+  G GLGLSI    + L GG + 
Sbjct: 585 EITLSFTVRDNGIGMTQEQCARLFQPFSQADTSTTRKYGGTGLGLSISRQLVELMGGEIR 644

Query: 774 ISS 776
           + S
Sbjct: 645 VES 647


>gi|146297038|ref|YP_001180809.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410614|gb|ABP67618.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 123/221 (55%), Gaps = 10/221 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           ++K ++I++ FV +VS+EL++PLT+I GF + LK    G++  K+   +++  I      
Sbjct: 339 IKKLEKIRSDFVANVSHELKTPLTSIKGFVETLKD---GAIEDKEIAGKFLNIIEVEVER 395

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ L+ND+L L+ ++   +++    + + ++L E  + +  K    NI++++  D KL  
Sbjct: 396 LVRLINDLLYLSEIENAKIQVTEDDVNVKEVLEECIELLRFKAESKNIKMQLRLDDKLKM 455

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +  +  L QIF  ++ NA+ ++ +   VI++  R +      VK+ G  IP++  + +F
Sbjct: 456 KI-HKDWLKQIFINLIDNAIVYNRENGEVIIEVERLDEKIAIRVKDTGIGIPQNEIERIF 514

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
            RF     +G+ R   G GLGLSIV+  + L+ G + + S 
Sbjct: 515 ERF-YRVDKGRSRKLGGTGLGLSIVKHIVELYNGKIYVQSE 554


>gi|323493897|ref|ZP_08099014.1| sensor protein TorS [Vibrio brasiliensis LMG 20546]
 gi|323311838|gb|EGA64985.1| sensor protein TorS [Vibrio brasiliensis LMG 20546]
          Length = 966

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 122/228 (53%), Gaps = 11/228 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA  E  +A R     K++F+  +S+E+R+P+  ++G   LLK +    L+ +Q  YV+ 
Sbjct: 458 RARQEAEQASRA----KSAFLATMSHEIRTPMNGVLGTARLLKDT---GLDRQQGHYVDV 510

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S T LL ++ND+LD + ++AG +++      L  ++++ KQ +  +  E +++++  
Sbjct: 511 INRSGTGLLAILNDVLDYSKIEAGHLEIRPVDFNLYAMVDDTKQLLNGRAQEKSLQLEYF 570

Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSS 729
            +  +  F   D  R+ Q+ + ++ NA+ F+ KG+  I  A      G  +F V + G  
Sbjct: 571 IESDVDKFWFGDMTRIGQVLNNLVGNAIKFTDKGNVDIYVAHDPDQQGHVLFEVSDTGVG 630

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I E   +++F+ F  ++     + G GLGL+I +  +   GG + + S
Sbjct: 631 ISEQEQQTLFDAFTQASGGLSSKGGTGLGLAISKRLVEAMGGEIHLES 678


>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
          Length = 1266

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 139/288 (48%), Gaps = 26/288 (9%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           ++YSI P+ +       +     ++T+  R E+ L +  E    A   K+ F+ ++S+E+
Sbjct: 472 IDYSIKPVEDESGNAIMLIAEGRDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEI 531

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  II  ++LL       ++ K   Y+  I+ S+  LL ++NDILD++ ++AG + L
Sbjct: 532 RTPMNGIIAASELLSNE---DISDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDL 588

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
                 + D+++++      +  +  I + V  D ++  +   D  RL QI   ++SNA+
Sbjct: 589 EIRDFKIEDVIDKLVNMFFHRTSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAV 648

Query: 700 DFSSKGSTVILKA------ARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            F+ KG  +I+        + ++G+    F +K+ G  I  +  + +F  F S A     
Sbjct: 649 KFTKKGGIIIVGVKELENRSAESGEVKLRFFIKDTGIGIAHENIEKIFEPF-SQADASTT 707

Query: 752 R---GVGLGLSIVESFINLHGGHVSISSSDE-----GVTTINCRIPSK 791
           R   G GLGL I +  + + GG + + S  E       T I  R P K
Sbjct: 708 RNYGGTGLGLCICKQLVEMMGGEIRVESEPEKGSTFSFTAIFHRQPKK 755


>gi|218709148|ref|YP_002416769.1| sensory box histidine kinase/response regulator [Vibrio splendidus
            LGP32]
 gi|218322167|emb|CAV18281.1| sensory box histidine kinase/response regulator [Vibrio splendidus
            LGP32]
          Length = 1430

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 134/260 (51%), Gaps = 14/260 (5%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
               ++T+  + +  LT+  ++   A E K+ F+ ++S+E+R+PL  I+   +L +  ++G
Sbjct: 773  VLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVG 832

Query: 601  SLNSKQSQYVEY-ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 + Q +   +S S+  LL++VNDILD + ++AG + L+Y    L+ L   V Q  A
Sbjct: 833  Y----EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQA 888

Query: 660  TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAAR 714
             + H   ++ K   D +L   V  D  R+ Q+ + +LSNA+ F+  G    +  +L    
Sbjct: 889  RQAHAKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFTEYGTVGLAAKLLDLDG 948

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
            +     F V ++G  I E+  +++F  FV  A  G  R   G GLGL+I +  I   GG 
Sbjct: 949  EQQQICFEVFDSGIGISEEHIRNLFQPFV-QADEGTTRKYGGSGLGLTISKQLIEQMGGS 1007

Query: 772  VSISSSDEGVTTINCRIPSK 791
            ++++S     +T +  +P K
Sbjct: 1008 LNVTSKINIGSTFSITLPLK 1027


>gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 155/355 (43%), Gaps = 30/355 (8%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D +   V  F P    + +N A+   W    + +  G H R +        NE       
Sbjct: 554 DAVPALVGYFDPQLYCRFANAAYLEWWGLRPDEVV-GLHARELIGDEMFRRNEP------ 606

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT------MLTFVNVTDSVRAERA 554
            ++  +   E   LQ  L     S+ E  I  +P+ Q       ++   ++T+   AE+ 
Sbjct: 607 -SMRAALRGESPRLQRALPHTDGSLRETLIAYVPDRQDGQVRGFIVVVSDITEIKVAEQQ 665

Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +   N  L         A   K++F+ ++S+E+R+P+  IIG T L+      SL   Q 
Sbjct: 666 MAALNAQLAARAIEAEGATRAKSAFLANMSHEIRTPMNAIIGLTHLMARDTRDSL---QR 722

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  I +++  LL ++ND+LDL+ +DAG + L  +   L+++L+   + +    +E  +
Sbjct: 723 ERLGKIDSAAKHLLQIINDVLDLSKIDAGKLVLEDTEFNLDEVLSRAFELVGESANEKGL 782

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSV 723
            + + +D        D  RL Q    +L+NA+ F+  G       +L   R      F V
Sbjct: 783 ELVLDTDRLPSHLRGDPTRLSQALINLLANAVKFTHAGWVRLRGELLAEDRQRVQVRFEV 842

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++ G  I  +   S+FN F        RR  G GLGL++ +  + L GG + + S
Sbjct: 843 QDTGEGIEPERFGSLFNAFEQADASTTRRHGGTGLGLALTQHLVTLMGGEMGVRS 897


>gi|260170318|ref|ZP_05756730.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|315918681|ref|ZP_07914921.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|313692556|gb|EFS29391.1| two-component system histidine kinase [Bacteroides sp. D2]
          Length = 499

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++       +++ +V 
Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS +S  L+ L++DILDL+ +++  +K  +S   LN L+ ++++  A K   + I IK 
Sbjct: 316 LISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPI-SGIEIKS 374

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGS 728
           +   +      D  RL Q+    ++NA  F+ KG       L     N   IF V++ GS
Sbjct: 375 LLPDEDVYINTDITRLKQVICNFINNARKFTQKGYIYFGYTLDNRNANSVQIF-VEDTGS 433

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IP++    +F+RF       Q  G GLGLSI ++ +    G + + S
Sbjct: 434 GIPQECLNEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDIFVES 479


>gi|254457460|ref|ZP_05070888.1| sensor histidine kinase/response regulator [Campylobacterales
           bacterium GD 1]
 gi|207086252|gb|EDZ63536.1| sensor histidine kinase/response regulator [Campylobacterales
           bacterium GD 1]
          Length = 645

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 124/224 (55%), Gaps = 12/224 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++ + +K+ F+ ++ +E R+P+  I+GF +LL+ +   +L+  QS+Y++ I+ SS  L+
Sbjct: 151 IKEVENLKSKFLSNIGHEFRTPMNGILGFIELLQQT---NLDKNQSEYLQMINRSSKSLM 207

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           + +  +LDL+ +  G +KLN S   ++  + ++  +      +  + +    D KL S +
Sbjct: 208 SNIETLLDLSQMQGGRLKLNPSLFSISQEMEKIAYNYGVVGRDKGVSVFSFIDPKLPSEI 267

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGD--FIFSVKNNGSSIPEDM 734
            AD +++ Q+ + ++ NA+ F+ +G  ++++      + NGD    FSVK+NG  I  + 
Sbjct: 268 NADFRKIKQVMNSLIQNAIKFTPRGGRIVVEVKLLKKQINGDCSVSFSVKDNGKGIANEQ 327

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              +   F++ +   +R GVGL LS     ++L G  + I S +
Sbjct: 328 IAMITEPFIAGSQADERLGVGLSLS--HGLVSLLGSELKIQSEE 369


>gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 777

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 6/259 (2%)

Query: 537 QTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           Q  L+F  +   +R A++ L +   A   A E K  F+ ++S+ELR+PL  IIG++++ +
Sbjct: 249 QIALSFNQMLKRLRLAQQELEQARTAAEAASEAKAQFLANMSHELRTPLNAIIGYSEMTQ 308

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                       Q +E I+ +   LL++VNDILD++ ++AG M L      +  LL++V 
Sbjct: 309 EDIAAGNTQSVQQDLEKINKAGLHLLSIVNDILDISKIEAGKMDLFLEDFDITQLLHDVV 368

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +   M +   + +++    +G   AD+ ++ QI   +LSNA  F+ +G   +    ++
Sbjct: 369 AIMTPLMEKQGNQFQLVLSPDIGMMHADQTKVRQILINLLSNATKFTHQGEITV--EVQN 426

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +G+ I  SV + G  +  +    +F  F        R+  G GLGLSI + F ++ GG +
Sbjct: 427 HGEHIVVSVHDTGIGMDPEQVDRLFKAFTQADASTTRKYGGTGLGLSISQHFCHMMGGSI 486

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S+    +    ++P K
Sbjct: 487 RVESTPGKGSHFTVQLPRK 505


>gi|239623827|ref|ZP_04666858.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521858|gb|EEQ61724.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1233

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 134/251 (53%), Gaps = 20/251 (7%)

Query: 540  LTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            L   +VTD +  ER    AL E     R+A + K+ F+  +S+++R+P+  I+G T L K
Sbjct: 817  LVRADVTDMLAEERRRKKALEEALAVAREASQAKSDFLSTMSHDIRTPMNAIMGMTVLAK 876

Query: 596  TSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                  L+ ++  +  ++ IS SS+ LL+L+NDILD+  ++   + LN+  I ++ LL +
Sbjct: 877  AH----LDERERVADCLQKISVSSSHLLSLINDILDMNKIEQSKISLNHMKISMSGLLEK 932

Query: 654  VKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +   +  +   + +R  + S G + G +  D  R+ QI   +LSNA+ F+ +G +V   A
Sbjct: 933  LSDIMEPQAKASGLRFTIQSRGIEHGYYYGDSLRINQILINLLSNAVKFTPEGGSVEFLA 992

Query: 713  A-----RDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
                  R  G   + F+V++ G  + E+    +F  F  N  R +  G GLGLSI +  +
Sbjct: 993  EEITPIRPQGYARYRFTVRDTGIGMGEEFLSHIFEPFTRNTARVE--GTGLGLSITKGLV 1050

Query: 766  NLHGGHVSISS 776
            +L GG++ + S
Sbjct: 1051 DLMGGYIGVES 1061


>gi|71907997|ref|YP_285584.1| PAS [Dechloromonas aromatica RCB]
 gi|71847618|gb|AAZ47114.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 901

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+PL  ++G   +    +  S  SK  +    I+ S  +LL ++NDIL
Sbjct: 532 KSEFLAKMSHEIRTPLHGVLGMAHI--GGRNTSEGSKAHEAFAKITHSGNLLLGIINDIL 589

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D + ++AG++K+  + I L  +L E  + +  + +   + +++ +++       +D  RL
Sbjct: 590 DFSKMEAGMLKIESTDIDLPAILAESMELMQERANAKKLSLQLRVAENLPAHCQSDSLRL 649

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +LSNA+ F+  GS V L A+ D    IF V + G  I  +    +FN F    +
Sbjct: 650 RQILLNLLSNAVKFTVSGS-VTLDASFDGHQLIFKVSDTGIGITHEQSSKIFNPFEQGDN 708

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              RR  G GLGL+I    + L  G + + S+ +  +    R+P
Sbjct: 709 STTRRFGGTGLGLAITSHLVKLMEGTIHLESTPDNGSRFEIRLP 752


>gi|125973908|ref|YP_001037818.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|125714133|gb|ABN52625.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
          Length = 589

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 127/239 (53%), Gaps = 22/239 (9%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTI 619
           +RK ++I+  FV +V++EL++P+T I GF + LK    G++N+     +++E I   +  
Sbjct: 359 VRKLEQIRTEFVSNVTHELKTPITPIRGFIETLKN---GAMNNPVVAERFLEIIDIEAER 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---VKQSIATKMH---ENNIRIKVIS 673
           L  L+NDIL L+ ++  +   N     L  ++++   V Q+IA +      NN+R +V+ 
Sbjct: 416 LHELINDILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVLM 475

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                   A+  R+ Q+   ++ N + ++ +  +V +   R++G  + SVK+ G  IP  
Sbjct: 476 K-------ANINRMKQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSA 528

Query: 734 MCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RF     +G+ RG+   GLGLSIV+  +NL+ G + ++S     T    +IP
Sbjct: 529 HIPRIFERFYR-VDKGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586


>gi|260174381|ref|ZP_05760793.1| two-component system histidine kinase, FrrD [Bacteroides sp. D2]
 gi|315922648|ref|ZP_07918888.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696523|gb|EFS33358.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 482

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 118/216 (54%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P+  I+    LL+  ++G+LN +Q Q  + I  +S  LL
Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLL 313

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG ++         +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 314 SITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   VI+ A +D       V++ G  I     KS+F+
Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENWIELYVQDFGKGIDPRYHKSIFD 433

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468


>gi|226354971|ref|YP_002784711.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226316961|gb|ACO44957.1| putative histidine kinase, classic; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 528

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 14/234 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTI 619
           L ++ E +  F    S+ELR+P+T I G    L  +TS  G    +Q++ ++ I + S  
Sbjct: 290 LEQSFESQRRFTSDASHELRTPVTAISGHASYLLRRTSPTG----QQAESLKIIQSESER 345

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L NL+  +L LA  D+G + LN + I     L E+ + +A         + V   G+   
Sbjct: 346 LTNLIASLLQLARSDSGALVLNKAPIFSTLFLGEISRELAPLAQAQQTTLDV--SGQDIP 403

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKS 737
           F  D  RL Q+   ++ NA+   ++  TV L++A ++G       V+++G  IPED  + 
Sbjct: 404 FEGDPDRLKQVIINLVGNALKAGAR--TVTLRSALEDGGTQVHLRVQDDGPGIPEDQLER 461

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  + ++    + G GLGLSI +  ++ HGG + + S+    TT +  +P
Sbjct: 462 LFDRFYRLEDSRSRDQGGAGLGLSIAKGIVDAHGGRIWLESTLGQGTTAHVLLP 515


>gi|225681940|gb|EEH20224.1| ethylene receptor [Paracoccidioides brasiliensis Pb03]
          Length = 2254

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 32/259 (12%)

Query: 552  ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL    EA RK                 A + K+ F+ +VS++LR+P+  +IG T+LL
Sbjct: 1709 KRALAHAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELL 1768

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND-LLNE 653
            K +   SL+ +Q+ YV+ I   +  LL L+NDILD + ++AG MK+    + L D +L  
Sbjct: 1769 KKT---SLDREQNGYVDSIRVCADTLLTLINDILDFSKLEAGKMKVTAIPLNLRDTILEA 1825

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--L 710
            V+    T  H     I+ + +      V  D  RL QIF  +LSN+  F+ +GS  +   
Sbjct: 1826 VRALCYTHRHRGLQTIEDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGSVTVNAK 1885

Query: 711  KAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
             +  ++G    + K  + G  IP +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 1886 SSVEEDGRIRITCKVVDTGIGIPGEQLVRLFRPF-SQADSSSARSFGGSGLGLSICKAII 1944

Query: 766  -NLHGGHVSISSSDEGVTT 783
             ++ GG + +  S+EGV T
Sbjct: 1945 EDVLGGKIWL-QSEEGVGT 1962


>gi|156053730|ref|XP_001592791.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980]
 gi|154703493|gb|EDO03232.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2208

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 20/240 (8%)

Query: 554  ALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            A + K EAL       +A + K+ F+ +VS+ELR+PL  +IG ++LL+ S    L   Q+
Sbjct: 1657 ANSAKAEALHNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS---DLRKDQA 1713

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHEN 665
            +  + I  S+ +LL ++NDILD + ++A  MKL       ++++ EV +S+  + +   +
Sbjct: 1714 EMADSIRVSADLLLTVINDILDFSKMEADKMKLFIVAFNADEMIREVVRSVSYSNRDKRS 1773

Query: 666  NIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKA---ARDNGDF 719
            +  +++I D  L  ++   D  RL Q+   ++ N++ F+  GS TV  K     +D    
Sbjct: 1774 SRNVEIIQDINLPQYLIYGDPVRLHQVLGNLIGNSLKFTENGSITVGAKTDWETKDTVKL 1833

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSISS 776
             F VK+ G  IP      +F  F    +   RR  G GLGLSI +S I ++ GG + + S
Sbjct: 1834 TFWVKDTGIGIPRQQLLKLFKPFSQADNSTARRYGGSGLGLSICKSLIQSMMGGQIELES 1893


>gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 718

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 126/239 (52%), Gaps = 16/239 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+AD +K+ F+  VS+ELR+PLT+I+G+T+LL          +Q ++V+ +   +  L  
Sbjct: 476 READRLKSEFLSIVSHELRTPLTSIMGYTELLLARDFTP--GEQREFVKTVYNEANHLYQ 533

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +V D+L +  ++AG ++L+   + L  +++++   ++ ++   +  +  I    L    A
Sbjct: 534 IVEDLLGVTRLEAGNVRLDRWAVSLRQIISDLTAHLSNQISGKHTMLIDIPP-YLPPVYA 592

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------RDNGDFIF-SVKNNGSSI-PE 732
           DR ++ Q+   +++NA+ +S  G  + L              G F+  ++ + G  I PE
Sbjct: 593 DRDKVRQVLVNLITNAVKYSPNGGEIRLTVTEHADLPPDHPKGQFVLVAISDQGIGIAPE 652

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D+ + ++ RF  V N +  +  G GLGLSI ++ + LHGG +   S     +T +  +P
Sbjct: 653 DLPR-IWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNRGSTFSFTLP 710


>gi|294665140|ref|ZP_06730442.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605101|gb|EFF48450.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 1214

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 12/226 (5%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616
            K E   +A   K  F+  + +E+R+P+T ++G ++LL KT++    +  Q  Y E I  +
Sbjct: 833  KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DPTQRSYTESIRRA 888

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL LVND LDLA +++G ++L++    +  L+ EV+  +A    E  +R   +  G 
Sbjct: 889  GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 947

Query: 677  LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733
            LG   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  +
Sbjct: 948  LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 1007

Query: 734  MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                +F RF   +  +   R  G GLGL+I +      GGH+ + S
Sbjct: 1008 QKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 1053


>gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591]
 gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591]
          Length = 922

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    L + Q  Y++ I  S+  LLN
Sbjct: 285 QEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTQLTTTQKDYLQTIERSANNLLN 341

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++ND+LD + ++AG + L      L++ L+EV   +A   HE  + + + I       FV
Sbjct: 342 IINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFV 401

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIF--SVKNNGSSIPEDMCKS 737
            D  RL QI + +L NA+ F+ +G+  I   K  ++N   +    +K+ G  I E     
Sbjct: 402 GDPLRLQQIVTNLLGNAIKFTEQGNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQ 461

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F     +   Q  G GLGL I +  +   GG +S  S     TT  C +
Sbjct: 462 LFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCTV 514


>gi|260642788|ref|ZP_05417328.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620539|gb|EEX43410.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 669

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 137/267 (51%), Gaps = 17/267 (6%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+ + + +L  +  + T+    E+ L +      ++D +K++F+ ++S+E+R+PL  
Sbjct: 382 ALVPMEDREPLLIGISWDTTNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 441

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ LL T+       +Q  Y + I+ +S ILL L+NDILDL+ ++AG   L Y    
Sbjct: 442 IVGFSQLLPTA---DTPEEQKLYSDIINQNSDILLQLINDILDLSKIEAGT--LEYVKRP 496

Query: 647 LNDLLNEVKQSIATKMHENNIRIKV---ISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
           +N  L EV ++I   +H+  I+  V     +G+       D  R++QI +  ++NA  F+
Sbjct: 497 IN--LGEVCRTIYA-VHKERIKGGVDFIFDNGEEDLQMEGDPNRIMQIITNFITNATKFT 553

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             G  +     R+  +    VK+ G  I ++    +F RFV      Q  G GLGLSI  
Sbjct: 554 HAGE-IRFGFEREGENVRVYVKDTGIGIEKEKVGHIFERFVKLNSFVQ--GTGLGLSICR 610

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             I   GG + ++S     +T    IP
Sbjct: 611 MIIEKIGGEIGVTSEFGKGSTFYFIIP 637


>gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 972

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 145/293 (49%), Gaps = 18/293 (6%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKAD 566
           ++R  + G  +L  D +L     P  + +T+   +++    R  AE AL +  E    A+
Sbjct: 537 EDRNPISGRWQLNHDRLL-----PWFDGKTVRVQISLDIGQRKQAEEALRQSKEEAESAN 591

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K+ F+ ++S+E+R+PL  I+G   LLKT+     N +Q +Y+     S+  L  L++D
Sbjct: 592 KAKSVFLANMSHEIRTPLNGILGMLQLLKTT---DPNDEQKEYLLGAIRSTNRLTRLLSD 648

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
           ILD++ ++AG M++  +   +  + + + +    +     + ++   +  L    + D  
Sbjct: 649 ILDVSRIEAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRWNDNLPLRLIGDEV 708

Query: 686 RLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI   ++ NA+ F+ KG     + ++ +A+  +   + +V + G  I E+  K +F 
Sbjct: 709 RLRQILFNLVGNAIKFTEKGTIRIDACLLPRASDSSVRVLVTVGDTGIGISEEHLKDIFE 768

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            FV       RR  G GLGLSIV   + L  G +SI S+    +T    +P K
Sbjct: 769 PFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGSTFYLSLPFK 821


>gi|114562197|ref|YP_749710.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333490|gb|ABI70872.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 869

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 131/246 (53%), Gaps = 16/246 (6%)

Query: 544 NVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +VT+  R  + L EKN  L        KA+  K+ F+  +S+ELR+PL  I+GF  L+++
Sbjct: 454 DVTERNRLNQKLLEKNIELENAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLMES 513

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S        Q + +  I  +   LL L+N+ILDLA +++G + ++   + L++++ E   
Sbjct: 514 STPAP-PPAQKRSIAQILKAGWYLLELINEILDLALIESGKLPMSLEAVSLSEVMQECVL 572

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +   ++I++ V +      F+  DR RL Q+   +LSNA+ ++ KG +VIL+ ++ 
Sbjct: 573 MSEPQAQLHDIKV-VFTRSTTKDFLNVDRTRLKQVIINLLSNAIKYNRKGGSVILEHSQS 631

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           + D + FSV++ G  +  +    +   FNR    A+   + G G+GL + +  +   GG 
Sbjct: 632 SDDMMRFSVRDTGEGLSAEQLGQLFQPFNRLGQEAN--NQEGTGIGLVVSKRLVESMGGV 689

Query: 772 VSISSS 777
           + + S+
Sbjct: 690 IGVQST 695


>gi|163847651|ref|YP_001635695.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525510|ref|YP_002569981.1| response regulator receiver sensor signal transduction histidine
           kinase [Chloroflexus sp. Y-400-fl]
 gi|163668940|gb|ABY35306.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449389|gb|ACM53655.1| response regulator receiver sensor signal transduction histidine
           kinase [Chloroflexus sp. Y-400-fl]
          Length = 396

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 145/322 (45%), Gaps = 22/322 (6%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           SPG+  R + A C  Y ++        A I  F      ++G  E L + V+E  ++   
Sbjct: 89  SPGSRERALVAGCDGYLSKPIDARALPAQIAEF------IEGRRERLPE-VMETELLRSY 141

Query: 535 NAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N +       + + + A  R LT  N  L+  D +K+ F+  +S+ELR+PLT+++G+ +L
Sbjct: 142 NQK-------LVERLEARVRELTLANAQLQDLDRMKDQFLATLSHELRTPLTSLLGYLEL 194

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                LG L  +Q + V  +  SS +L   +N++L    V +    LN+  +   D+L  
Sbjct: 195 FDRGMLGPLTPQQEEAVRVMRRSSEVLARQLNNLLYFQEVRS--RSLNFVQLQPLDILRP 252

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  +   +  +  ++ +V+   ++     DR     +   +L NA  ++  G  V     
Sbjct: 253 LIAAARERAAQAQLQFEVLLS-EMQPIEVDRSAFEHLVRNLLDNAFQYTEPGGRVRFIVR 311

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGG 770
            +    I  V++ G  IP    + +F  F    H   RG   G GLGL+IV   +  HGG
Sbjct: 312 DEPTRLIIRVEDTGIGIPAGEQEKIFLPFYQVDHSLARGH-PGSGLGLAIVRHIVEAHGG 370

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            +++ S+    +     IP ++
Sbjct: 371 QIALRSAPGEGSAFTIAIPRRQ 392


>gi|291551123|emb|CBL27385.1| Signal transduction histidine kinase [Ruminococcus torques L2-14]
          Length = 696

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 122/243 (50%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E  ++A E K  F+ ++S+++R+P+  IIGF+DLL   K      K  +Y+  I 
Sbjct: 296 LKKSAEQAKEASEAKTRFLFNMSHDIRTPMNAIIGFSDLL--GKNLKNEEKAREYLGKIK 353

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L+ +++ +L+ A +++G   L      L+++   V     + +    I+  + ++
Sbjct: 354 SSGNFLMTIIDQVLEKARIESGTAVLKMQAENLSEMFYSVNTVFESDIQSKEIQYSIDTN 413

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGD--FIFSVKNNGSS 729
            +    V D+ +L +I+  I+SNA+ ++  G  +   I + A D+    ++F  ++ G  
Sbjct: 414 IQHKYAVCDKTKLQEIYLNIVSNAIKYTPNGQAIHVNITETASDDKKAWYVFICEDTGIG 473

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           + ++    +F+ F S  H        G GLGLSIV+SF+ L GG + + S     T    
Sbjct: 474 MKQEYLPHIFDEF-SREHTATENKVVGTGLGLSIVKSFVELMGGKIYVESEQGKGTKFTV 532

Query: 787 RIP 789
            IP
Sbjct: 533 EIP 535


>gi|261854763|ref|YP_003262046.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
 gi|261835232|gb|ACX94999.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
          Length = 858

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 7/244 (2%)

Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           E+AL    EA ++A+   + K+ FV ++S+ELR+PL  IIG++++L        N++ + 
Sbjct: 318 EQALKIAGEARKEAEDANQTKSQFVANMSHELRTPLNAIIGYSEILLEESEDDGNTQYAP 377

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E I  S   LL LVNDILD++ ++AG M+L   +  +   +  V  +    + +N   
Sbjct: 378 DLERILNSGKHLLALVNDILDISRIEAGKMELYLESFPICREIQTVIDTARPVIDKNQNS 437

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNG 727
           +    D  LG    D  +  QI   ++SNA  F+  G T+ L   R++ D F  +V + G
Sbjct: 438 LVFECDDSLGHMRGDLTKFRQILLNLISNAAKFTQVG-TLTLSVRREDTDHFTIAVADTG 496

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + E+    +F  F        R+  G GLGLSI   F  + GG ++ +S+    +   
Sbjct: 497 IGMNEEQLGRLFQVFSQADASTTRKYGGSGLGLSISRHFARMMGGDITATSTPGSGSVFT 556

Query: 786 CRIP 789
             +P
Sbjct: 557 VSLP 560


>gi|163749758|ref|ZP_02157004.1| two-component hybrid sensor and regulator [Shewanella benthica
           KT99]
 gi|161330571|gb|EDQ01529.1| two-component hybrid sensor and regulator [Shewanella benthica
           KT99]
          Length = 1176

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 13/261 (4%)

Query: 526 LEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  +IP+     +L   F+ +V++ ++ E  L +  E      + K+ F+  +S+E+RS
Sbjct: 462 VEMKMIPVQLGDEILLTAFLHDVSERMQYETELKQAKEQAELGSKAKSRFLATMSHEIRS 521

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++G  +L+  SKL   N  Q  Y      + T LL+ +NDILD + ++AG M L  
Sbjct: 522 PLNAVLGGVELMLDSKL---NKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLKN 578

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
            +     ++ +V Q +A K +E  + +    +  + + V  D QRL Q+   ++ NA+ F
Sbjct: 579 MSFSPAKMVAQVMQILAPKANEKGVNLATFINRNVPALVKGDAQRLRQVLHNLVDNAIKF 638

Query: 702 SSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           SS G       I            +V + G  I     K +F  F  V + H     G G
Sbjct: 639 SSGGCISVEMWIPDGHHQEVQLHCAVTDEGIGISLSAQKKLFQEFSQVHDQHNTNYTGTG 698

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I    I + GG + +SS
Sbjct: 699 LGLAICSELITMMGGEIELSS 719


>gi|254225188|ref|ZP_04918801.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
 gi|125622287|gb|EAZ50608.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
          Length = 1020

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L + Q  YV+ I+ S   LL +
Sbjct: 501 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 557

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 558 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 617

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 618 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 677

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 678 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 713


>gi|170736601|ref|YP_001777861.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169818789|gb|ACA93371.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1002

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 11/249 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T     ER L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+    L  
Sbjct: 489 FSDITSQKNIERKLDEALRAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGREPLAD 548

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              ++ Q VE    +S++LLNL++DILDL+ ++AG M +      L + + +        
Sbjct: 549 TQRERLQTVE---GASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPL 605

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
                ++  VI D  L S +V D  R+ QI + ++ NA+ F+ +G   +    RD+ D  
Sbjct: 606 ATAKGLQYDVIVDDALASRYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDADPA 665

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +  V + G  + +    ++F  F        RR  G GLGL++ +    +  G + +
Sbjct: 666 SPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDV 725

Query: 775 -SSSDEGVT 782
            S+  EG T
Sbjct: 726 KSAPGEGST 734


>gi|332885680|gb|EGK05926.1| hypothetical protein HMPREF9456_02190 [Dysgonomonas mossii DSM
           22836]
          Length = 916

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 25/255 (9%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + E+ LT       + D++K++F+ ++S+E+R+PL  I+GF+ ++  +      
Sbjct: 536 DITELKQIEKELTTAKLKAEQLDKLKSAFLSNMSHEIRTPLNAILGFSRIIAET---DDQ 592

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K++ Y  ++ ++S  LL LVN+ILD + +++GI++          L  E+ ++ A++ H
Sbjct: 593 EKRNYYFNFVESNSGRLLGLVNEILDFSKIESGIVEFEPEDFDFGMLCLEIYETYASQCH 652

Query: 664 E------NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                  NNI       G      +DR R+ Q+ S ++ NA  F+ KG         DN 
Sbjct: 653 PETELIYNNI-------GAELWIRSDRNRIHQVLSNLIINAQKFTKKGYIKYGFEVIDNN 705

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             ++ V ++G  I ED    +F RF+   SNA      G GLGL+I  S +   GG +S+
Sbjct: 706 VKVY-VNDSGIGIVEDQLDKIFERFMQVDSNA-----IGTGLGLAICRSIVERLGGEISV 759

Query: 775 SSSDEGVTTINCRIP 789
           +S  +  +     +P
Sbjct: 760 TSELQKGSCFTFTLP 774


>gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1784

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +++ V++T+       L    E    A + K  F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +L   + KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++   
Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128

Query: 658  IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
             + K     I +       +  + + D  RL Q+   +++NA+ F+ +G  +    +++ 
Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              D+    FSV+++G  + E     +F  F        R+  G GLGL+I +  + L GG
Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248

Query: 771  HVSISS 776
             + + S
Sbjct: 1249 KIGVES 1254


>gi|301059368|ref|ZP_07200295.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300446597|gb|EFK10435.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 571

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K SFV +VS+EL++PLT+I  + +LL   ++   + K++ Y++ I + S  L  LVN++L
Sbjct: 348 KTSFVSNVSHELKTPLTSIRMYAELLFEGRIKDPDKKKT-YLQVIVSESQRLTRLVNNVL 406

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D + ++ G    +   I LN+ L EV  S   ++ E  + I     G+     ADR  + 
Sbjct: 407 DFSRLEQGRKTYHPQKIDLNEFLMEVVDSHRLRIKEAGMTIDTHFLGEKIFVNADRDAIE 466

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+F  ++ N++ ++  G  V++   ++  D    +++ G  +PE     +F +F  V + 
Sbjct: 467 QVFINLIDNSIKYAGPGIEVVVSVNKNGKDCEIRIEDRGPGVPEADRHKIFEKFHRVDDT 526

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +++G GLGLSI        GG++   S D G +    R+P
Sbjct: 527 LTSKQQGSGLGLSIARKISRDLGGNLVYESRDGGGSCFIVRLP 569


>gi|300868141|ref|ZP_07112775.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333876|emb|CBN57955.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1055

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 19/256 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF ++TD   AE  L E   A   A++ K+ F+ ++S+ELR+PL  I+G+  +L+     
Sbjct: 551 TFQDITDRKNAEVTLQEAKLAADAANQAKSEFLANMSHELRTPLNGILGYAQILQRD--S 608

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  KQ   +  I    + LL L+NDILDL+ ++A  M+L  S+      L  V +    
Sbjct: 609 SLTPKQLAEINIIYKCGSHLLTLINDILDLSKIEARKMELYPSSFYFLGFLQVVSEICRI 668

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---- 715
           K  +  I      D  L   V AD +RL Q+   +L NA+ F+  G+     A  D    
Sbjct: 669 KAEQKGISFICNFDAALPYVVEADEKRLRQVLVNLLGNAVKFTDAGAVTFKVAVVDLISV 728

Query: 716 --------NGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
                   N + I F +++ G  +  +  + +F  F  V +  R    G GLGL+I    
Sbjct: 729 ESTTSTLTNINTIRFQIEDTGVGMTSEQMQKIFQPFEQVGDTRR-MVEGTGLGLAISLKI 787

Query: 765 INLHGGHVSISSSDEG 780
           I + G  + ++S  + 
Sbjct: 788 IEMMGSSIKVASKSQA 803


>gi|332528410|ref|ZP_08404402.1| sensor histidine kinase/response regulator [Hylemonella gracilis
           ATCC 19624]
 gi|332042089|gb|EGI78423.1| sensor histidine kinase/response regulator [Hylemonella gracilis
           ATCC 19624]
          Length = 1127

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 128/260 (49%), Gaps = 8/260 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R + AL    EA   A + K  +V  +++ELR+PL +I+G+  +L  
Sbjct: 641 QTQLLQKEIDAHQRTDEALQSAKEAAESASQAKTRYVAGMTHELRTPLNSILGYAQILLR 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +L     + V  I  S   +  L++ +LDLA ++AG ++L+ + +   + L+E+ +
Sbjct: 701 GN--ALKGGAREAVTTIQQSGQHMHALIDGLLDLARIEAGRLRLDPAPLPFQEFLSELAR 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  +     +  ++ + G++ ++V AD +RL QI   +L+NA+ F+ +G  V     R 
Sbjct: 759 MVQPQAEGKGLAFRLETLGRVPAWVRADAKRLRQILINLLANAVRFTDRGRIVFRVDCRH 818

Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                F +++ G  I P+D  + +F  F   S   R    G GLGL+I      L GG +
Sbjct: 819 E-VLRFDIEDTGIGIAPQDQ-ERIFMPFERGSAGRRSSEAGTGLGLAITHLLTELMGGEL 876

Query: 773 SISSSDEGVTTINCRIPSKE 792
            + S     +T + R+  +E
Sbjct: 877 ILQSEVGHGSTFSVRLYLRE 896


>gi|322514684|ref|ZP_08067712.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976]
 gi|322119382|gb|EFX91491.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976]
          Length = 616

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 122/236 (51%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +  K+  +  +S+ELR+PL  IIG + +L     G L  +Q +Y++ I+ S+ 
Sbjct: 105 NATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTQQQREYLKTINISAV 161

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++ +DI+DL  +D+  ++L    +  + L++++         +  I+  +     L 
Sbjct: 162 SLGHIFSDIIDLEKIDSRRIELFNKEVEFSQLISDISNFANLMADQRKIKFHISYSDNLP 221

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
           +F+  D  RL Q+   ++SNA+ F+  G  + L   R D+  F FS+++ G  IP++  +
Sbjct: 222 NFILVDNARLSQVLWNLVSNAVKFTPAGGDIYLDVQRVDDDHFSFSLRDTGIGIPKNEQR 281

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            VF  F    N+   + +G G+GL+I +    L GG +++ S +   +T    I +
Sbjct: 282 KVFAMFYQAENSQEKKAQGSGIGLAISKRIAKLMGGDLTLESEEGKGSTFTLTIQA 337


>gi|319892475|ref|YP_004149350.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162171|gb|ADV05714.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464422|gb|ADX76575.1| signal transduction histidine kinase SsrB [Staphylococcus
           pseudintermedius ED99]
          Length = 585

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 120/232 (51%), Gaps = 10/232 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA---SSTILLN 622
           +++K  F+  VS+ELR+P++ + G+T+    S +  + ++  +  E+++     S  L  
Sbjct: 351 EQVKKDFIASVSHELRTPISLLQGYTE----SIVDGVVTEPEEINEFLTVVLDESKRLSR 406

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-V 681
           LVN++L++A +DA  + +      + DL+ ++      +  E N+ +    DG++ S   
Sbjct: 407 LVNELLNVAKMDAEGLNVTQELQPMQDLVRKMAMKYRQQAQELNLTLDFQMDGEMASLWY 466

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  R+ Q+ + ++ NA  ++  G T+ +KA  D+   I ++++ G  I     + +F R
Sbjct: 467 YDFDRMEQVLTNLVDNASRYTQPGDTISIKATADHDHQILTIEDTGVGIAPQHLEKLFER 526

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  V +A +   +G GLGL I    +N HGGH+ + S  +  T     +P K
Sbjct: 527 FYKVDSARKRGSQGTGLGLFITRMIVNAHGGHIRVESELDKGTKFIISLPKK 578


>gi|294625322|ref|ZP_06703959.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600391|gb|EFF44491.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1134

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 12/238 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N  + 
Sbjct: 736 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRG 792

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664
             +  I  S+     +++D+LD++ + +G ++L      +  L+    E+ Q  A    +
Sbjct: 793 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALT-RK 849

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + +    DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V+
Sbjct: 850 IALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQ 908

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I  +    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 909 DTGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 966


>gi|270293636|ref|ZP_06199838.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275103|gb|EFA20963.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 300

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 15/252 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E  L +  E   +AD +K++F+ ++S+E+R+PL  IIGF+ LL   +     
Sbjct: 56  DITQLKQTEAMLIQAKEKAEEADWLKSAFLANMSHEIRTPLNAIIGFSSLLHYVE---NE 112

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ QY+  I+ ++ +LL L+ND+LDL+ ++AG ++L+       +L+ E     +   +
Sbjct: 113 QEREQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEE-----SITEY 167

Query: 664 ENNIR--IKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           E N+   +K+ +      G    D  R+ QI +  +SNA+  + +G   +      +G  
Sbjct: 168 ERNVPAGVKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGYIEVYYETDTDGIR 227

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           I SV + G  IP D    +F RF       Q  G GLGLSI +S +    G +++ S+  
Sbjct: 228 I-SVSDTGCGIPPDKLGMIFERFEKVDSFAQ--GAGLGLSICKSIVEKMNGVITVDSTMG 284

Query: 780 GVTTINCRIPSK 791
             +T    +P +
Sbjct: 285 VGSTFTVELPCR 296


>gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1055

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 11/216 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  I+    L+  S    L  +Q+       A+S  L  L++DIL
Sbjct: 671 KSEFLANMSHEIRTPINGIVTILQLMVAS---GLTEEQADQARMALAASRRLTRLLSDIL 727

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D++ V+AG M +  +   L   + EV++ +        +   V I D      + D  R 
Sbjct: 728 DISRVEAGKMAIVQAPFHLRRAMMEVRELLLPAGDPPGVTCTVSIDDAVPEIVIGDVTRF 787

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRF 742
            QI + +L NA+ F++ G+  +   A+ +        +FSV ++G  IP+D   S+F  F
Sbjct: 788 QQILTNLLGNALKFTASGTVSVTAVAQPDASAGHPQVLFSVADSGVGIPKDKLDSLFAPF 847

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V   +R   +G GLGL+I +  + L GG + I S
Sbjct: 848 TQVDQGYRRDYQGAGLGLAICKRLVGLMGGSIGIES 883


>gi|328472027|gb|EGF42904.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus 10329]
          Length = 783

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S    L  +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS---PLTEEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    DF   I  V++
Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 500 STFTVSIHVP 509


>gi|302409538|ref|XP_003002603.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
 gi|261358636|gb|EEY21064.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
          Length = 1373

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 129/235 (54%), Gaps = 16/235 (6%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + +K+ F+ ++S+E+R+P+T +IG  +LL+  K   L+S+Q +YVE I  S+  LL ++N
Sbjct: 790  NRLKSQFLANMSHEIRTPITGVIGMAELLQDMK---LDSEQREYVENIQRSANALLTVIN 846

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-----KVISDGKLGSF 680
            DILD + V++G + +      L+ +L +V + ++      ++       + I++  +   
Sbjct: 847  DILDFSKVESGRLDIEEVQFSLSVVLKDVSKMLSFAAERKDLAFLSDVSREITNDMV--V 904

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCK 736
            + D  R+ QI + +L+N++ F+++G     +K  ++  D +   F++++ G  I E++ K
Sbjct: 905  IGDPGRVRQIVTNLLTNSIKFTNQGHVKFSVKKEKETHDSVIIRFTIEDTGIGIEEEVRK 964

Query: 737  SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F  F        RR  G GLGL+I ++ + L  G +++ S     TT    IP
Sbjct: 965  KLFQPFSQGDASTARRFGGTGLGLTICKNLLELMRGKITLESDLGNGTTATFWIP 1019


>gi|332524176|ref|ZP_08400403.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107512|gb|EGJ08736.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 650

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  IIG T LL      + + +Q   +  +  ++  LL +V+DIL
Sbjct: 275 KSAFLANMSHEIRTPMNAIIGLTHLLARD---ATDDQQRSRLAKVDGAARHLLQVVSDIL 331

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ ++AG + L      L+++L      + TK  E  + + V +       + D  RL 
Sbjct: 332 DLSKIEAGKLSLEREEFRLDEVLERSLSMVRTKAAEKGLELDVDTTPLPERLIGDPTRLA 391

Query: 689 QIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+   +L+NA+ F+ +G   +   +  RD    +  F V+++G  I  D    +F  F  
Sbjct: 392 QVLINLLANAVRFTDRGGVRLHGRELWRDEHRLLARFEVQDSGPGIAPDQLGRLFEAFDQ 451

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             +   RR  G GLGL++   F  L GG   + S   EG T
Sbjct: 452 GDNSATRRHGGTGLGLALTRRFATLMGGEAGVDSRLGEGST 492


>gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 628

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 128/243 (52%), Gaps = 15/243 (6%)

Query: 544 NVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++++  + +R L + +N+AL  A++ K+ F+ ++S+E+R+P+  I+G   LLK +   SL
Sbjct: 237 DISEQKKYQRELEDSRNKAL-AAEKAKSLFLANMSHEIRTPMNGILGMASLLKDT---SL 292

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N  Q + +  I++    LL ++NDIL  + +++G + +   +  L   + +V   IA   
Sbjct: 293 NPLQEEMLSIINSCGDSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVEDVTSLIANIA 352

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDF 719
            E  I I    D  +  F+ +D  RL QI + +LSNA+ FS     V L  K    NG+ 
Sbjct: 353 SEKGITIHSKIDNSIPQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDIKLTGCNGNI 412

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           +   FSVK+NG  + E+    +F  F + A  G  R   G GLGLSI      L GG + 
Sbjct: 413 VKVLFSVKDNGIGMSEEEQSRLFQEF-TQADEGVTRKFGGTGLGLSISSKLAKLLGGKIK 471

Query: 774 ISS 776
           + S
Sbjct: 472 VES 474


>gi|289669047|ref|ZP_06490122.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 942

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 10/237 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A  +K+ F+  +S+ELR+PL  I+G++ L+++    S N  + 
Sbjct: 540 SLQAETAARGQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSDVAESANLGRG 596

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I  S+     +++D+LD++ + +G ++L      +  L+    + +        I
Sbjct: 597 LVI--IERSARAQKQIIDDLLDMSAIMSGKIRLQAEHFDIAGLVRSTLELMQPTALARGI 654

Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +++ +  DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++
Sbjct: 655 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPTGGTVRVAMDIEDERLRLCVQD 713

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            G  I  +    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 714 TGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 770


>gi|227891158|ref|ZP_04008963.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
 gi|227867032|gb|EEJ74453.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
          Length = 492

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 7/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E NE +++ +E +  F    ++E+R+PLT I G  + L    +   + ++S  +E 
Sbjct: 249 QSLRESNEEIKRQEERRRQFFADAAHEMRTPLTTINGLLEGLAYDAIPEESKEKS--IEL 306

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L+ LVN+ LD   + +G ++L+ +   +  +LN + + +  K  +   + ++ 
Sbjct: 307 MRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQLRNKAEQVGDKFELY 366

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  KL  + AD  RL+QI   I  NA+ F+  G  + + A + N + I  + +NG  + E
Sbjct: 367 TPDKLMVY-ADYDRLVQIIFNITQNAIQFTENG-VISISAEKGNEETIIRISDNGIGMNE 424

Query: 733 DMCKSVFNRF--VSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  ++++ R+     + +  + G  GLGLSIV   + LH G V++ S +   TT   R P
Sbjct: 425 EQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTVESKEGKGTTFTLRFP 484

Query: 790 SK 791
           +K
Sbjct: 485 NK 486


>gi|225351866|ref|ZP_03742889.1| hypothetical protein BIFPSEUDO_03468 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157113|gb|EEG70452.1| hypothetical protein BIFPSEUDO_03468 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 344

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 15/235 (6%)

Query: 554 ALT--EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ALT  E  E L+ AD+++   V +VS+ELR+P++       +++    G ++   S  +E
Sbjct: 101 ALTFNEMAEELQHADQMRRDMVANVSHELRTPVS---ALQAMVENMADGVIDPTPSN-LE 156

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRI 669
            I   +  L +L+  +LDL+ ++AG   L        D L+E  +   IA   H ++I +
Sbjct: 157 SILNQTHRLSDLIAFLLDLSRMEAGAASLQIEMFNFADFLDETVEPLEIADAGHAHDIEM 216

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNG 727
            V  D ++     D+ RL Q+F+ I++NA+  S+  +TV+++A   +D G  + +V N G
Sbjct: 217 HVPDDIEMA---GDQDRLRQLFTNIIANALKHSADNTTVLIEAHENKDFGTIVTNVVNFG 273

Query: 728 SSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           S IP++    +F RFV        +  G GLGLSI      LHGG V +     G
Sbjct: 274 SQIPQEARSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGSVRVVDDPRG 328


>gi|167755722|ref|ZP_02427849.1| hypothetical protein CLORAM_01237 [Clostridium ramosum DSM 1402]
 gi|167704661|gb|EDS19240.1| hypothetical protein CLORAM_01237 [Clostridium ramosum DSM 1402]
          Length = 639

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 135/247 (54%), Gaps = 14/247 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQ 608
           + E A+  KNE LR       + ++ +S++LR+PLT+I G   +L  +  GSL+ +K+ Q
Sbjct: 398 KEEAAIEAKNERLRA------NLLRSISHDLRTPLTSISGNASVLINNS-GSLDENKKMQ 450

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             E I   S  L+NLV ++L +  ++ G M L+  T ++ +++NE    I+ K  E+ I 
Sbjct: 451 LYEVIYDDSLWLINLVENLLSVTRIEDGKMNLHLETELIEEVINEALNHISHKKDEHRIE 510

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           +K   +  L     D   ++Q+   I+ NA+ ++ KGS + ++  + + DF+   + ++G
Sbjct: 511 VKANDEFILAKI--DAGLIIQVIINIVDNAIKYTPKGSMISIETFK-HKDFVEIQIADDG 567

Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           + I +   + +F  F +  H     RRG+GLGL++ ++ I  HGG++++  +    T  +
Sbjct: 568 AGISDKDKEKLFEMFYTVKHEVIDGRRGLGLGLALCKAIIVAHGGNIAVKDNIPHGTIFS 627

Query: 786 CRIPSKE 792
             +P KE
Sbjct: 628 FTLPIKE 634


>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1792

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +++ V++T+       L    E    A + K  F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +L   + KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++   
Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128

Query: 658  IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
             + K     I +       +  + + D  RL Q+   +++NA+ F+ +G  +    +++ 
Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              D+    FSV+++G  + E     +F  F        R+  G GLGL+I +  + L GG
Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248

Query: 771  HVSISS 776
             + + S
Sbjct: 1249 KIGVES 1254


>gi|75675205|ref|YP_317626.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420075|gb|ABA04274.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           winogradskyi Nb-255]
          Length = 1005

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 7/249 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F +++ S + E  L++      +A   K   +  +S+E+R+PL +IIGF +++   K G
Sbjct: 746 AFRDLSQSKKTETELSQARRQAERAANAKADVLARISHEIRTPLNSIIGFAEVMIDEKFG 805

Query: 601 SLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           SL +++  YVEY   I AS   +++ ++D+LDL+ ++ G + L +    LND++ +    
Sbjct: 806 SLGNER--YVEYMKDIRASGERIISFIDDLLDLSRIETGKLDLAFVNQNLNDIVEQCVAV 863

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDN 716
           +  + +   I I+      L + VAD Q L QI   ++ N++  ++ G  VI+  A  D 
Sbjct: 864 MQPQANRERIIIRTSLAHTLPAIVADAQALRQITLNLIGNSIHLANAGGQVIVSTAVNDF 923

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
           GD    V+++G S+ ED   +    F +     Q  +  G+ LS+ ++ +  +     I 
Sbjct: 924 GDVALRVRDSGHSLSEDELAAATEPFRTPPPSDQASKSAGVSLSLTKALVEANRAQFHIK 983

Query: 776 SSDEGVTTI 784
           +     T I
Sbjct: 984 TGPHSGTLI 992


>gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
 gi|300075808|gb|ADJ65207.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
          Length = 765

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 14/238 (5%)

Query: 550 RAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           R E AL  T   E    A+E K+ F+  VS+E+R+P+  I+G ++LL  S    L+SKQ 
Sbjct: 327 REEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMES---GLSSKQR 383

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y + I  ++  L+ ++NDILD + +++G + L         L+ E+       +   ++
Sbjct: 384 DYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDV 443

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720
           +  +  D     S V D  RL Q+   +LSNA+ F+  G   +  +AR +          
Sbjct: 444 QFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLF 503

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F++ + G  I  +  + +F  F        RR  G GLGL+I ++ + L GG ++  S
Sbjct: 504 FAITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQS 561


>gi|260777959|ref|ZP_05886852.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605972|gb|EEX32257.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 619

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 9/227 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  I+G  +LLK +K    N  Q  YV+ +  SS  LL+++NDIL
Sbjct: 213 KSEFLANMSHEIRTPMNGIVGVAELLKETKP---NEVQRNYVDILLTSSHTLLDIINDIL 269

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++AG  +L+ +   L  L+ +     + +  +  +      D  +   + AD  RL
Sbjct: 270 DFSKIEAGHFELDPTKFDLKSLIQQQANEYSIRAKQQELFFDCNIDPAVPQEIEADSVRL 329

Query: 688 LQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
            Q+ + ++ NA+ F+ +G     + L          F VK+ G  I +D   S+F++F  
Sbjct: 330 KQVINNLIGNALKFTHRGYVELNIKLLENETGNQLQFEVKDTGIGIAKDKLDSIFDKFQQ 389

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +   Q  G GLGL+I +  + L GG + ++S  +  ++    IP
Sbjct: 390 ADGSTARQYGGTGLGLAISQKIVELMGGKLQVTSEVDLGSSFYFSIP 436


>gi|300022943|ref|YP_003755554.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524764|gb|ADJ23233.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 881

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  ++E L   D +K+ F  +VS+ELR+PLT I+   + LK S + SL +  ++ +E I 
Sbjct: 193 LAAQHEELSALDRLKSQFFANVSHELRTPLTLILAPVEKLK-SDVASLGAPAAELLEVIE 251

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL LVNDIL L  ++ G   L    I +   L+    S+        I + +   
Sbjct: 252 NNALRLLRLVNDILGLIRLEEGRASLVKKQIDMAHFLSHTTASMKHLAAMKGIELTLSEP 311

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  AD   L +I   +++NA+ F+     + + AA +       + + G  IP + 
Sbjct: 312 QGDLRIDADPDALEKIIGNVIANAIKFTPPEGRIDVAAAHEGDMVTVRIADTGIGIPPEQ 371

Query: 735 CKSVFNRFVSNAHRGQRRGVG--LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF        RR  G  LGL++V   I  HGG V++SS     TT   R P
Sbjct: 372 LPHIFDRFYQVDGSATRRHQGLGLGLALVRELITRHGGDVAVSSDSGRGTTFVLRFP 428



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +   SV++NG+ I   +   +F+ F S    G+  G+GLGL++    I  HGG +S+ SS
Sbjct: 796 ELFVSVRDNGTGIDPKIQSQIFDPFFSTKDVGE--GMGLGLAVSHRIIANHGGSLSVKSS 853


>gi|254506571|ref|ZP_05118712.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16]
 gi|219550444|gb|EED27428.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16]
          Length = 957

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 118/217 (54%), Gaps = 7/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LLK      LNS+QS+YV+ I+ S + LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLKDE---GLNSQQSRYVDVINRSGSTLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG +++      L  ++ +V+Q ++ +  E  + +  + +  + +F   
Sbjct: 522 LNDVLDYSKIEAGHLEIRTKDFNLKAMVEDVEQLLSGRAAEKQLELSALIESDVTTFWKG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           D  R+ Q+ + ++ NA+ F+  G   I  A      G  +F V ++G  I     K++F+
Sbjct: 582 DVTRISQVLNNLVGNAIKFTDSGHVDIYVANDPERAGHVLFEVSDSGIGISPKEQKNLFD 641

Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F  ++     + G GLGL+I +  +   GG + + S
Sbjct: 642 AFTQASGGLSSKGGTGLGLAISKKIVEAMGGELQVDS 678


>gi|196045140|ref|ZP_03112373.1| sensory box histidine kinase [Bacillus cereus 03BB108]
 gi|229184110|ref|ZP_04311321.1| hypothetical protein bcere0004_16760 [Bacillus cereus BGSC 6E1]
 gi|196024142|gb|EDX62816.1| sensory box histidine kinase [Bacillus cereus 03BB108]
 gi|228599399|gb|EEK57008.1| hypothetical protein bcere0004_16760 [Bacillus cereus BGSC 6E1]
          Length = 288

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 131/242 (54%), Gaps = 13/242 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  S+  +   +  QY
Sbjct: 45  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GSQFHTNREECEQY 103

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+ S + +  L+ ++      ++ + ++  
Sbjct: 104 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 163

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 164 CIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQC 222

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           IP +    VF +F    +RG++       G G+GL+I  S   LH G +++ S++ E V 
Sbjct: 223 IPNENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVF 278

Query: 783 TI 784
           TI
Sbjct: 279 TI 280


>gi|114571557|ref|YP_758237.1| histidine kinase [Maricaulis maris MCS10]
 gi|114342019|gb|ABI67299.1| histidine kinase [Maricaulis maris MCS10]
          Length = 657

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 17/243 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++V   V + RA  E  EA ++A   K+ F   V++ELR+PL   +G + LL+ +   +L
Sbjct: 149 ISVGRDVTSRRAAHEDLEASQRA---KSLFFAAVTHELRTPLAGALGVSRLLEGT---AL 202

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q+ YV  I+AS+   L +V+DILDL+ ++AG ++L   T+ + +L+ E  +  A + 
Sbjct: 203 KPDQADYVRSIAASADHALAMVDDILDLSRLEAGRLELRPETVDIAELVRETVELAAPRA 262

Query: 663 HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARD 715
            E  + I V+ + G       D  RL QI   ++ NA+ F++ G   I          RD
Sbjct: 263 QEKALEIGVVHAFGAPTRVTGDAARLKQILYNLIGNAVKFTAAGGVRIDITNAPDSEGRD 322

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
                 SV + G  I E   +S+F  F   A    G   G GLGL++V    +     + 
Sbjct: 323 R--LALSVSDTGPGISEADQESLFEHFERGAAERDGAESGAGLGLAMVRRLADAMNSAMG 380

Query: 774 ISS 776
           + S
Sbjct: 381 VES 383


>gi|71909298|ref|YP_286885.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71848919|gb|AAZ48415.1| signal transduction histidine kinase [Dechloromonas aromatica RCB]
          Length = 620

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 12/244 (4%)

Query: 548 SVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           S+R  +A L +  E    A+  K+ F+ ++S+ELR+P+T IIG + L+  ++   L+ +Q
Sbjct: 224 SLRESKAKLRQAKEEAESANAAKSQFLANMSHELRTPMTGIIGMSFLMMRTE---LDEQQ 280

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             + + I  S+  LL ++NDILDL+ ++A  ++L ++      ++ EV   I+      N
Sbjct: 281 RDFADTIQRSANALLIIINDILDLSAIEAEKLRLAHANYSARKVIGEVLALISPSADAKN 340

Query: 667 IR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIF 721
           I  I  I+D      V D  RL Q+   +L NA+ F+ +GS  +  A +   D      F
Sbjct: 341 ISLISQIADDLPEILVGDAIRLRQVLLNLLGNAIKFTEQGSVTLEVAHQPTDDGRQRLNF 400

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSD 778
            V++ G  +   +  ++F  F        RR  G GLGLSI    I L  G +S  S  D
Sbjct: 401 VVRDTGIGMTPGVVNALFTPFFQADLSNTRRFGGTGLGLSISRRLIELMHGEISAESEPD 460

Query: 779 EGVT 782
            G T
Sbjct: 461 VGST 464


>gi|54301740|ref|YP_131733.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum SS9]
 gi|46915160|emb|CAG21933.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum SS9]
          Length = 971

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D+ R  +AL EK EA   AD  K++F+ ++S+E+R+P+  ++G + LL  +    L  +Q
Sbjct: 388 DTQRLNQAL-EKAEA---ADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKT---DLTQEQ 440

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++  +  S   +++++NDILD + ++ G  KLN +   + DL+  ++ +  +   E  
Sbjct: 441 RHHLLTLLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKG 500

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG---DFI 720
           +   +       S F AD+ R+ QI   +++NA+ F+ KG   +   +   DN      I
Sbjct: 501 LDFSIQCHFDSNSWFFADKSRIRQILFNVINNAIKFTDKGEVRVSLNQGQCDNPKERKLI 560

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            + ++ G  I ED  + +F+ F        RR  G GLGLSIV    NL  G + + S+
Sbjct: 561 ITAQDTGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVRQLANLMNGDIQLESA 619


>gi|259417433|ref|ZP_05741352.1| histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259346339|gb|EEW58153.1| histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 753

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T +V  E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +LL  +   SL
Sbjct: 196 LDITATVHYEEELRTARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLNDT---SL 252

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q  Y   I  S   LL ++ND+LD + ++A  + L+     L   ++EV   +    
Sbjct: 253 TEEQRLYANTIKNSGEALLVIINDVLDYSKIEAEKLVLHPEPFDLEACMHEVVMLLQANA 312

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
            +  + + V  D  +  SF+ D  R+ QI + ++ NA+ F+++G        +    DN 
Sbjct: 313 RDKGLTLLVDYDLFMPTSFIGDPGRIRQILTNLIGNAVKFTNQGHVTARVTGVPHPEDNT 372

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  S++++G  IPE+  + +F  F  V +    Q  G GLGL+I E  I +  G + +
Sbjct: 373 VMLHISIEDSGIGIPEEKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKMMDGEIWV 432

Query: 775 SSSDEGVTTINCRIP 789
            S     +    R+P
Sbjct: 433 ESEFGKGSCFGFRLP 447


>gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040]
 gi|99038894|gb|ABF65506.1| histidine kinase [Ruegeria sp. TM1040]
          Length = 761

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 126/255 (49%), Gaps = 11/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T +V  E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +LL  +   +L
Sbjct: 190 LDITATVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDT---TL 246

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q  Y   I  S   LL ++ND+LD + ++A  + L+     L   ++EV   +    
Sbjct: 247 TEEQRLYANTIKNSGEALLVIINDVLDYSKIEADKLALHPEAFDLEACMHEVVMLLQANA 306

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
            +  + + V  D  + + F+ D  R+ QI + ++ NA+ F+++G        +    DN 
Sbjct: 307 RDKGLTLLVDYDLFMPTNFIGDPGRIRQILTNLIGNAIKFTNEGHVTARVTGVPHPEDNT 366

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             +  S++++G  IP+D  + +F  F  V +    Q  G GLGL+I E  I L  G + +
Sbjct: 367 VMLHISIEDSGIGIPDDKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLIKLMDGEIWV 426

Query: 775 SSSDEGVTTINCRIP 789
            S     +    R+P
Sbjct: 427 ESQLGKGSCFGFRLP 441


>gi|23012953|ref|ZP_00052923.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 666

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 9/245 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  L E  ++  +A   K+ F+  + +E+R+PL  ++G   LL  +    L+ +Q  + 
Sbjct: 132 GEEVLREARDSAEQAARAKSVFLAMMGHEIRTPLNGVLGMARLLLET---DLDPRQKSFT 188

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E + +S  +LL LVNDILD + +DA  M L      + D + EV+  + +++ E ++ + 
Sbjct: 189 ETLVSSGELLLGLVNDILDFSRLDAEGMTLAVEPFDVLDTVEEVRLVLTSRVAEKDLTLT 248

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNN 726
                G       DR RL QI   ++ NA+ F+  G   I     A + G  + F +K+ 
Sbjct: 249 TRFGTGVRRVVAGDRLRLRQILFNLVGNAIKFTDHGGIEISVEPLAVERGQVLRFLIKDT 308

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  ++   +F  F        RR  G GLGL+I +   +L GG +   S     TT 
Sbjct: 309 GIGIGPEIGARLFTEFWQGDSGAARRFDGAGLGLAICKRLTDLMGGEIGYDSLPGQGTTF 368

Query: 785 NCRIP 789
              +P
Sbjct: 369 RVDLP 373


>gi|289665858|ref|ZP_06487439.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 946

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 10/237 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A  +K+ F+  +S+ELR+PL  I+G++ L+++    S N  + 
Sbjct: 544 SLQAETAARGQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQSDVAESANLGRG 600

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I  S+     +++D+LD++ + +G ++L      +  L+    + +        I
Sbjct: 601 LVI--IERSARAQKQIIDDLLDMSAIMSGKIRLQAEHFDIAGLVRSTLELMQPTALARGI 658

Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +++ +  DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++
Sbjct: 659 ALELDAPCDGELW-FFGDAGRLQQVLTNLLSNALKFTPTGGTVRVAMDIEDERLRLCVQD 717

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            G  I  +    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 718 TGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 774


>gi|270290039|ref|ZP_06196265.1| signal transduction histidine kinase [Pediococcus acidilactici 7_4]
 gi|304385703|ref|ZP_07368047.1| sensor histidine kinase [Pediococcus acidilactici DSM 20284]
 gi|270281576|gb|EFA27408.1| signal transduction histidine kinase [Pediococcus acidilactici 7_4]
 gi|304328207|gb|EFL95429.1| sensor histidine kinase [Pediococcus acidilactici DSM 20284]
          Length = 382

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 125/251 (49%), Gaps = 14/251 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V  S+  ERAL +           K+  + +VS++LR+PLT+IIG+  L++  +  S +
Sbjct: 133 SVISSMEEERALKQS----------KDDLITNVSHDLRTPLTSIIGYLRLIEDHQYQSTD 182

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               +Y       S  + +LV D+ +   V     KLNY+ I ++ +L ++  S   +  
Sbjct: 183 DIL-KYTHTAYLKSVQMKSLVEDLFEYTKVSQSNPKLNYNKIHVDSMLQQLAASFELEAK 241

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +    I      +    + D +++ ++F+ +++NA+ + + G  + L A + N   IF V
Sbjct: 242 QKGFVITSTCVPEDLEMMGDAEKIGRVFNNLITNALKYGAGGKHIYLNAHQINDTVIFEV 301

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            N+G  +P      +F+RF  V  +      G GLGL+I +S + +H G +   S+D+  
Sbjct: 302 ANDGQKVPAQALGKLFDRFYRVEESRSKATGGTGLGLAIAQSIVEMHNGTIEAHSNDKRT 361

Query: 782 TTINCRIPSKE 792
           + I  ++P K+
Sbjct: 362 SFI-IQLPLKQ 371


>gi|269794138|ref|YP_003313593.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269096323|gb|ACZ20759.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 569

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 132/262 (50%), Gaps = 21/262 (8%)

Query: 542 FVNVTDSVRAER-ALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--- 595
            V + DS   +R AL   ++   L +A E K+ FV  VS+ELR+PLT+I+G+ +L+    
Sbjct: 309 IVRIVDSGGVDRGALVASHDVTELMEAIETKDRFVGTVSHELRTPLTSIMGYLELIAEDD 368

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           ++    L+ +  +YV     ++  LL+LV+D+L  A +D+G ++L      L+ L+ +  
Sbjct: 369 STGDNPLSEETREYVGIARRNAEQLLSLVSDLLTTAQIDSGALRLTTDVTTLSSLVADAV 428

Query: 656 QSIATKMHENNIRI------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++   +  E  I +       V+ D        DR+R+ Q+   +LSNA+ ++  G TV 
Sbjct: 429 EAARPRFVEAGITLTSTVVPTVVQD-------VDRRRMAQVIENLLSNALKYTPAGGTVT 481

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           +  +   G  + +V + G  +       +F +F    +A   + +G GLGL I  + +  
Sbjct: 482 VTTSTVLGSSVMTVSDTGIGMSRADLGKMFTKFFRAESARTARIQGFGLGLVICRAIVEA 541

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG + I S+    T ++  +P
Sbjct: 542 HGGKLRIDSTLGRGTKVSAVLP 563


>gi|209774098|gb|ACI85361.1| sensor protein torS [Escherichia coli]
 gi|320642985|gb|EFX12186.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H- str.
           493-89]
 gi|320648443|gb|EFX17098.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H- str.
           H 2687]
          Length = 904

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F+  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|254458661|ref|ZP_05072085.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
 gi|207084427|gb|EDZ61715.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
          Length = 1088

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 18/281 (6%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+   E  SD   E ++I L  A       ++ + + A+    E  E+ ++A E K+ F+
Sbjct: 352 LKRVAEDTSDEDDETAVINLQTADGTAQAYDLLEKIIAQT--REDKESAQEASEAKSMFL 409

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GFT+LLK + LG    +Q ++VE I  SS  LL ++N+ILDL+ +
Sbjct: 410 ANMSHEIRTPLNGIVGFTELLKDTGLG---EEQHEFVEIIEKSSENLLEIINNILDLSKI 466

Query: 634 DAGIMKLNYSTIVLN--DLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690
           ++   KL    IV N  D      +  A +  E +I +    D  L      D  ++ +I
Sbjct: 467 ESN--KLEIEDIVFNPIDEFESAVEVYAVRASEKHIDLGCFIDPTLEHPLKGDPTKIKEI 524

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVS 744
              +LSNA+ F+S   ++ +   R   D        F V+++G  +  +    +F  F  
Sbjct: 525 IINLLSNAVKFTSSAGSINVDIRRVECDQDGKTRVRFEVQDSGIGVTSEQKSRIFEAFSQ 584

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
                 R+  G GLGL+I   F+ L GG + + S     TT
Sbjct: 585 ADTSITRKYGGTGLGLTISSRFVELMGGELDLHSETGSGTT 625


>gi|71905874|ref|YP_283461.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71845495|gb|AAZ44991.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 738

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 11/224 (4%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A   A+  K+SF+  +S+E+R+P+  I+G   LL  S  GS   ++ +YV  I  S   L
Sbjct: 343 AAEAANLAKSSFLATMSHEIRTPMNGILGMAQLLLMS--GSAEDERHEYVRTILNSGQTL 400

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGS 679
           L+L+NDILD++ V+AG ++L  +      ++ EV      +     + I     G  +  
Sbjct: 401 LSLLNDILDISKVEAGKLELKPAVFAPQGVIEEVVGLFFAQAEAKGLSITAQWHGPAVQR 460

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNG--DFIFSVKNNGSSI-PED- 733
           + AD+ RL QI + +LSNA+ F+ +G+  I   +  R++G     F+V ++G  I PE  
Sbjct: 461 YRADQIRLRQILTNLLSNAVKFTKEGAIRIEAREIEREDGWARLEFAVIDSGIGIAPEKR 520

Query: 734 -MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +    F++  S+A R Q  G GLGLSIV S   L GG   + S
Sbjct: 521 ALLFKPFSQLDSSATR-QYGGTGLGLSIVRSLAELMGGEAGVES 563


>gi|84393815|ref|ZP_00992561.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
 gi|84375555|gb|EAP92456.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
          Length = 1129

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++NE L+ A+++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ 
Sbjct: 444 KTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPIPANQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670
           I  S   L  LV+D+LD   +  G + +  S + L+   + V +     +    IRI  +
Sbjct: 504 IINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRIINQ 563

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V SD  LG   +D QRL Q+   ++ NA+ ++S+G  VI  +  D+ +    V + G  I
Sbjct: 564 VPSD--LGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDD-NIRVQVVDTGQGI 620

Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +
Sbjct: 621 PAEYLEHIFEPLIQAGQDASNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTL 680

Query: 789 P 789
           P
Sbjct: 681 P 681


>gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500]
          Length = 1016

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 120/235 (51%), Gaps = 17/235 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +A   K EA  KA++ K+ F+ ++S+E+R+PL +IIG  +LLK      L + Q + +
Sbjct: 173 ANQAFLAKEEA-EKANKAKSDFISNMSHEMRTPLNHIIGSLELLKEFP---LTTDQKELL 228

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                SS  LL +VN+ILDL+ V+ G   LN S   L   L +   +IA   H+  + + 
Sbjct: 229 NISQQSSESLLFMVNNILDLSKVEQGKTVLNLSIFNLVSFLEDSIGAIAPNAHQKGLMVG 288

Query: 671 VISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKN 725
           + S     S   + D   L QI   +LSNA+ F+SKG   I   +    +N  +   ++ 
Sbjct: 289 LYSTPCSSSIPVIGDVNLLRQILVNLLSNAIKFTSKGEVFIKVSVSPNLNNTSYSTQIEV 348

Query: 726 NGSSI---PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774
             S I   P+D  K +F RF S    G  R   G GLGLSI +  + L GGH+ I
Sbjct: 349 TDSGIGIKPKDFDK-LFQRF-SQLDTGVNRAYDGSGLGLSICKQLVELMGGHIGI 401


>gi|217978617|ref|YP_002362764.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
 gi|217503993|gb|ACK51402.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
          Length = 1792

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 116/244 (47%), Gaps = 18/244 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +   +L+ +Q + 
Sbjct: 1107 QARRALEEKAGELALTSKYKSEFLANMSHELRTPLNSILILGQQLSDNVEHNLSDRQVEC 1166

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I A+ + LLNL++DILDL+ +++G + ++   I    LL  + +    +     +  
Sbjct: 1167 ARTIHAAGSDLLNLISDILDLSKIESGTVSIDAEEISFAHLLQMIARPFRHEAESRGLSF 1226

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------------LKAARD 715
             V  ++G  G  V D +RL QI   +LSNA  F++ G   +             L  AR 
Sbjct: 1227 DVEATEGLSGHIVTDVKRLQQILKNLLSNAFKFTAAGGVSLKVAPAASGWSADNLSLARA 1286

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
             G   F V + G  I  +  K +F  F   A  G  R   G GLGL+I      L GG +
Sbjct: 1287 KGVVAFKVADTGIGISAEKQKIIFEAF-QQADAGTSRKYGGTGLGLAISRDLAQLLGGEI 1345

Query: 773  SISS 776
             + S
Sbjct: 1346 QLRS 1349


>gi|16124282|ref|NP_418846.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221232965|ref|YP_002515401.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13421116|gb|AAK22014.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220962137|gb|ACL93493.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 900

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 128/247 (51%), Gaps = 9/247 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++ +  +AE AL E   A + A+E K  F+ ++S+E+R+P+  ++G   +LK  +L  
Sbjct: 501 ILDIDEKKKAELALIEAERAAQAANEAKAQFLANMSHEIRTPMNGVLGVMHVLK-RELPP 559

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +S  +  +    A+  +L  L++D++D++ ++AG + LN+  +   DL+  V + +AT+
Sbjct: 560 GDS--ASLLNEALAAGQMLSTLLDDVIDISRIEAGRLDLNHEPVDPRDLVRGVARLLATQ 617

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDF 719
                +R+++     LG    D  R+ Q    ++ NA+ F+ KGS  +    R  D G +
Sbjct: 618 AAHKGLRLELDLPDDLGWIETDPTRVRQALFNLIGNAVKFTLKGSVTVRAQRRITDAGPY 677

Query: 720 -IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F + + G  +P +  K +F RF        RR  G GLGL+I      + GG VS  S
Sbjct: 678 LVFDIIDTGVGVPLEAQKRLFERFQQADAGTTRRFGGSGLGLAITRKLARMLGGEVSFRS 737

Query: 777 -SDEGVT 782
              EG T
Sbjct: 738 VPGEGST 744


>gi|302340321|ref|YP_003805527.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637506|gb|ADK82933.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 862

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 131/251 (52%), Gaps = 14/251 (5%)

Query: 550 RAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           R+ER L   KNEA   A+  K  F+ ++S+E+R+P+  I+GFT++L+  +    + ++ +
Sbjct: 357 RSERELRRAKNEA-ESANRTKTIFLANMSHEIRTPMNAILGFTEILEAEE---RDPRRRK 412

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+E I++S T LL ++ND+LDL+ V+A  + L      +  L+ E++   A    + ++ 
Sbjct: 413 YIEAINSSGTTLLAIINDLLDLSKVEADKIVLKPEPTDITSLMEELRYIYAPLAEKKHLI 472

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNG--DFIF 721
           + V I+     + + DR RL QI   ++ NA+ F++ G   I+    K + ++   D   
Sbjct: 473 LDVEIATATPEALLIDRTRLRQILVNLVGNAIKFTTVGGVRIVINTWKQSEESTSVDLRI 532

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V ++G  I     + +F  F        R+  G GLGL+I      L GG +S++SS  
Sbjct: 533 DVADSGPGIAVSDQERIFGIFEQGEVAWDRKYGGTGLGLAISRRLSTLMGGTISLTSSPG 592

Query: 780 GVTTINCRIPS 790
                +  +P+
Sbjct: 593 EGAIFSIELPN 603


>gi|300869219|ref|ZP_07113813.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332764|emb|CBN59011.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 607

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 118/238 (49%), Gaps = 16/238 (6%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           ++K+ F+ + S+ELR+PL  ++GF  L+    +     ++ Q+++    S+  LLNL+ND
Sbjct: 349 QLKSQFLANTSHELRTPLNGMLGFLKLV-MDGMADDPEEEHQFIQEAYRSALHLLNLIND 407

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADR 684
           +LD+A ++AG M+L  + I +N+LL EV+     ++ +  +  K+         +   + 
Sbjct: 408 VLDIAKIEAGKMELELTPIKINELLQEVENFTQAQLQQKQLNFKIQKPATQDEIIVYGNY 467

Query: 685 QRLLQIFSKILSNAMDFSSKGS----------TVILKAARDNGDFIFSVKNNGSSIPEDM 734
           QRLLQ+   ++ NA+ F+ +G            ++++     G     V + G  +  D 
Sbjct: 468 QRLLQVMLNLVGNAIKFTHEGGISISMELIKKKIVIQNRELPGLVKIRVADTGIGVSLDK 527

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
              +F  F  V      Q  G GLGL+I +  +    G V+  S  EG+ +T+   IP
Sbjct: 528 QDKLFQSFFQVDGDRTRQYGGTGLGLAISQKLVEAMRGTVNFYSMGEGLGSTVTFTIP 585


>gi|284989871|ref|YP_003408425.1| PAS/PAC sensor signal transduction histidine kinase
           [Geodermatophilus obscurus DSM 43160]
 gi|284063116|gb|ADB74054.1| PAS/PAC sensor signal transduction histidine kinase
           [Geodermatophilus obscurus DSM 43160]
          Length = 408

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 23/254 (9%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T+  EA R  + +K+ FV  +S+ELR+PLT+I+G+ +L+      SL  +  +Y+  +  
Sbjct: 159 TDMTEA-RATERMKDQFVSLISHELRTPLTSILGYLELVLDDP--SLGDEPRRYLGTVER 215

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
           ++  LL LV D+L  A VDAG   L   ++ L  ++   ++++        + + V + D
Sbjct: 216 NAQRLLRLVGDLLFTAQVDAGRFSLQPESVDLAAVVRAAEETVRVTAAATGVEVVVDVPD 275

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI----------- 720
           G L     D  RL Q    ++SNA+ F+  G  V L    A R  G  +           
Sbjct: 276 GGL-VVPGDAVRLGQACDNLVSNAVKFTPAGGRVTLALRPAWRTAGGAVVATPGDDAVRV 334

Query: 721 --FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +V + G  IP      +F RF   S A R    GVGLGL+I  +    H G + ++S
Sbjct: 335 ARLAVSDTGIGIPAGEQGQLFARFFRASTARRHAVPGVGLGLAITRAIAAAHDGSLEVAS 394

Query: 777 SDEGVTTINCRIPS 790
            +   TT    +P 
Sbjct: 395 VEGRGTTFTLTLPG 408


>gi|226289104|gb|EEH44616.1| two-component sensor protein histidine protein kinase
            [Paracoccidioides brasiliensis Pb18]
          Length = 2333

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 32/259 (12%)

Query: 552  ERALTEKNEALRK-----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +RAL    EA RK                 A + K+ F+ +VS++LR+P+  +IG T+LL
Sbjct: 1788 KRALAHAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELL 1847

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND-LLNE 653
            K +   SL+ +Q+ YV+ I   +  LL L+NDILD + ++AG MK+    + L D +L  
Sbjct: 1848 KKT---SLDREQNGYVDSIRVCADTLLTLINDILDFSKLEAGKMKVTAIPLNLRDTILEA 1904

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--L 710
            V+    T  H     I+ + +      V  D  RL QIF  +LSN+  F+ +GS  +   
Sbjct: 1905 VRALCYTHRHRGLQTIEDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGSVTVNAK 1964

Query: 711  KAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
             +  ++G    + K  + G  IP +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 1965 SSVEEDGRIRITCKVVDTGIGIPGEQLVRLFRPF-SQADSSSARSFGGSGLGLSICKAII 2023

Query: 766  -NLHGGHVSISSSDEGVTT 783
             ++ GG + +  S+EGV T
Sbjct: 2024 EDVLGGKIWL-QSEEGVGT 2041


>gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1436

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 12/243 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
            V+++D  R    L        +A ++K+ F+ ++S+E+R+P+  IIG + L LKT    
Sbjct: 677 LVDISDQKRVAEELRLAKAKAEEATQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQ--- 733

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  KQ  Y+  +  + T LL ++NDILD + ++AG + L      L++++  V    A 
Sbjct: 734 -LTPKQRDYIGKVHNAGTSLLAVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQ 792

Query: 661 KMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARD 715
           K HE  +  +  ++ G     + D  RL QI +  ++NA+ F+ +G    +  +++   +
Sbjct: 793 KAHEKGLEFLAHVTPGIPEFLLGDPLRLGQILTNFVNNAVKFTERGEIRLNIELIERTGE 852

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                FSV++ G  +  +    +F  F        R+  G GLGL+I    + L GG + 
Sbjct: 853 KLQLKFSVRDTGIGMTTEQAAKLFQPFTQADMSTTRKHGGTGLGLTICRRLVELMGGRIW 912

Query: 774 ISS 776
           + S
Sbjct: 913 LES 915


>gi|332882289|ref|ZP_08449917.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679673|gb|EGJ52642.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1362

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 10/250 (4%)

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            +  + V +  +A+R L EK+  + + +E +  F  ++S+E+R+P+T I+  + L+K  K 
Sbjct: 793  VVLLQVKEHFKAKRIL-EKHRQVEELNEARIQFFMNISHEIRTPMTLIL--SPLMKLMKS 849

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                + Q  Y   I  +S  +L L+N ++D   ++ G  +L Y  + +   +N + +   
Sbjct: 850  DKDETHQRSY-SLIYQNSQRILRLINQLMDARKIEKGQFRLKYHKVEMVGFVNNLYELFE 908

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
            T  H   I    + D +      D Q   ++   +LSNA  F+  G  V ++    +G  
Sbjct: 909  TTAHNRGITFTFVHDMERMDVCVDPQNFDKVVMNLLSNAFKFTPDGGVVTIELKDVSGDI 968

Query: 718  ----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                DF  SV ++G  IP+     VF RF S    G   G G+GL++ +  + LH G + 
Sbjct: 969  PGERDFRLSVTDSGVGIPDQEKSRVFERFYSGKWGGDYVGTGIGLNLTKLLVELHEGRIW 1028

Query: 774  ISSSDEGVTT 783
              ++ EG  T
Sbjct: 1029 AENNPEGQGT 1038


>gi|295676004|ref|YP_003604528.1| Osmosensitive K channel His kinase sensor [Burkholderia sp.
           CCGE1002]
 gi|295435847|gb|ADG15017.1| Osmosensitive K channel His kinase sensor [Burkholderia sp.
           CCGE1002]
          Length = 951

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 115/221 (52%), Gaps = 13/221 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-------SLNSKQSQYVEYISAS 616
           +++ ++NS +  +S++LR+PLT I+GF+ +L   + G       S   +  + VE I   
Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQGRGGQGPTDPQSAAHRNDELVEAIHEE 735

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  +  +V ++LD+A + AG ++LN    +L + +    ++    + ++ +++ + +D  
Sbjct: 736 ALRMTGIVTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACRRVLADHPVQVTLPADLP 795

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF---SVKNNGSSIPE 732
           L     D   + ++FS +  NA  +++ G+ + + A + D G   F   ++ +NG+ +P 
Sbjct: 796 LLHL--DAVLMERLFSNLFENAAKYTASGTPLAIGAQQIDAGGVPFVRVTIDDNGAGLPA 853

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            M   VF +F        + G+GLGL+I  + +  HGG + 
Sbjct: 854 GMEARVFEKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIG 894


>gi|256829874|ref|YP_003158602.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579050|gb|ACU90186.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 678

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 9/227 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  I+G   LL  + L   +++Q ++V     SS  L  L+ DIL
Sbjct: 312 KSEFLANMSHEVRTPLNGIVGMLQLLSHTYL---DAEQKEFVFTAIRSSKRLTQLLTDIL 368

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           +++ ++AG + +        DL + V+           + +    D  + S  V D  RL
Sbjct: 369 EISRIEAGKLDVVAQEFHFVDLRDSVRDLFVIPAKAKGLELSFEIDEAIPSHVVGDEGRL 428

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRF-- 742
            QI   ++ NA  F+ +GS  +     D G  +   F+V++ G  IP +  + +FN F  
Sbjct: 429 RQILFNLVGNATKFTPRGSVQVTARRLDQGGQMHVEFTVQDTGVGIPRERQEDIFNAFTQ 488

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V  +   Q  GVGLGL+IV   +++  G +++ S     TT+  R+P
Sbjct: 489 VDGSAVRQHGGVGLGLAIVRRLVDMMDGTITVQSEPGHGTTMTVRVP 535


>gi|83310510|ref|YP_420774.1| sensor kinase silS [Magnetospirillum magneticum AMB-1]
 gi|82945351|dbj|BAE50215.1| Probable sensor kinase silS [Magnetospirillum magneticum AMB-1]
          Length = 502

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 120/250 (48%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            + +  RAE  L +    L + +     F    +++L+ P+  ++ F+ LL+      L 
Sbjct: 247 EIQERTRAESDLQQVIAELSRTNAELERFAYVAAHDLQEPVRGLVSFSQLLERKYAVDLE 306

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y+ +I A +  + NLV D+L+ +   AG   L  +T+   +L+  V QS+  ++ 
Sbjct: 307 GEGKDYLRFIIAEAQRMSNLVRDLLEYSR--AGGAGLTVATVDCAELVESVVQSLRPRIE 364

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIF 721
           +   R+++   G L S  ADR +L Q+F  +L NA+ + ++ +   V + A RD   + F
Sbjct: 365 QKGARLEI---GPLPSLSADRGQLYQVFHNLLGNALKYGAENAVPEVRISAERDGAAWRF 421

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +V +NG  I       VF  F          G G+GL+I +  +  HGG + ++S+    
Sbjct: 422 AVADNGIGIDAQYHDYVFEVFRRLHTTAAYSGTGIGLAICKRIVESHGGRMCLTSTPGQG 481

Query: 782 TTINCRIPSK 791
           +T    IP +
Sbjct: 482 STFFFTIPDQ 491


>gi|53719636|ref|YP_108622.1| putative two component regulatory system sensor kinase
           [Burkholderia pseudomallei K96243]
 gi|126452082|ref|YP_001065910.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|134282766|ref|ZP_01769469.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
 gi|242314513|ref|ZP_04813529.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
 gi|254188507|ref|ZP_04895018.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254259210|ref|ZP_04950264.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
 gi|254297923|ref|ZP_04965376.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
 gi|52210050|emb|CAH36024.1| putative two component regulatory system, sensor kinase
           [Burkholderia pseudomallei K96243]
 gi|126225724|gb|ABN89264.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|134245852|gb|EBA45943.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
 gi|157807017|gb|EDO84187.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
 gi|157936186|gb|EDO91856.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|242137752|gb|EES24154.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
 gi|254217899|gb|EET07283.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
          Length = 693

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +G   +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|187775852|ref|ZP_02798687.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024557|ref|ZP_02997155.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4113]
 gi|189010261|ref|ZP_02806017.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401974|ref|ZP_02779320.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403035|ref|ZP_02792497.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404265|ref|ZP_02788237.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4501]
 gi|189405993|ref|ZP_02825630.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC508]
 gi|208808659|ref|ZP_03250996.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816058|ref|ZP_03257237.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822610|ref|ZP_03262929.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396858|ref|YP_002269719.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4115]
 gi|217326169|ref|ZP_03442253.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. TW14588]
 gi|12514260|gb|AAG55540.1|AE005293_4 sensor protein torS (regulator TorR) [Escherichia coli O157:H7 str.
           EDL933]
 gi|13360608|dbj|BAB34571.1| sensor protein torS [Escherichia coli O157:H7 str. Sakai]
 gi|187770408|gb|EDU34252.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018115|gb|EDU56237.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001171|gb|EDU70157.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358204|gb|EDU76623.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363312|gb|EDU81731.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366555|gb|EDU84971.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC4501]
 gi|189377093|gb|EDU95509.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC508]
 gi|208728460|gb|EDZ78061.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732706|gb|EDZ81394.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738095|gb|EDZ85778.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158258|gb|ACI35691.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. EC4115]
 gi|209774100|gb|ACI85362.1| sensor protein torS [Escherichia coli]
 gi|209774102|gb|ACI85363.1| sensor protein torS [Escherichia coli]
 gi|209774106|gb|ACI85365.1| sensor protein torS [Escherichia coli]
 gi|217322390|gb|EEC30814.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           O157:H7 str. TW14588]
 gi|320192509|gb|EFW67151.1| Sensor protein torS [Escherichia coli O157:H7 str. EC1212]
 gi|320637860|gb|EFX07652.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           G5101]
 gi|320653760|gb|EFX21834.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|326338564|gb|EGD62391.1| Sensor protein torS [Escherichia coli O157:H7 str. 1125]
 gi|326347794|gb|EGD71510.1| Sensor protein torS [Escherichia coli O157:H7 str. 1044]
          Length = 904

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F+  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|327539007|gb|EGF25641.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 860

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 19/237 (8%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IKN F+ ++S+E+R+P+  I+G  +L+  S   SL+ +Q  Y+  I  S+  LL ++NDI
Sbjct: 320 IKNQFLANMSHEIRTPMHGILGTAELMTRS---SLDEQQRHYMYMIQTSAKGLLTVLNDI 376

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADRQR 686
           LD + VD+G M L      L DLL++   ++   K  E +++ +    G     V D  R
Sbjct: 377 LDFSKVDSGQMTLESVPFELKDLLSQTMHAVVNLKNEEVDLQFQP-PVGVPEIIVGDPTR 435

Query: 687 LLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFI-FSVKNNGSSIPEDM 734
           L Q+   ++ NA+ F+ +G   +           L  +   G  I F++ + G  + +  
Sbjct: 436 LRQVLINLVGNALKFTEQGRVTVTVENETRDATTLDTSDSKGSRIAFTITDTGIGMTQQQ 495

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F        RR  G GLGLSI    + L GG + +SS     ++    IP
Sbjct: 496 QAKIFEAFTQGDSSTTRRFGGTGLGLSISSQLVELMGGRLQVSSVPNEGSSFRFDIP 552


>gi|323693831|ref|ZP_08108023.1| hypothetical protein HMPREF9475_02886 [Clostridium symbiosum
           WAL-14673]
 gi|323502134|gb|EGB18004.1| hypothetical protein HMPREF9475_02886 [Clostridium symbiosum
           WAL-14673]
          Length = 450

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS---- 607
           RAL    + +RK    +N FV   S+ELRSPL  I      L++   G   N  Q+    
Sbjct: 198 RALQPARDGIRK----QNEFVAAASHELRSPLAVIRSSLSALESELPGETGNQNQTVTLR 253

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q ++        +  LV D+L LA+ DAG  +L+Y+    + LL E  ++      E NI
Sbjct: 254 QLIKNSDRECRRMARLVGDMLLLASSDAGNWELHYTQTEPDTLLIEAYEAFLPLCREKNI 313

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------- 718
            + + +        +ADRQRL Q+ + +L NA+ ++  G  V LK  +  G         
Sbjct: 314 NLILELPKEPFPPLLADRQRLEQVITILLDNAISYTPAGKEVRLKMYKKEGSRRISAGYF 373

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +  V + G  +P+++ + +F+RF   +A R  ++  GLGLSI +    +HGG +++  
Sbjct: 374 RTVIEVADTGKGVPDEIKQRIFDRFYRGDASRKDKKHFGLGLSIAKELTEMHGGTLAVHD 433

Query: 777 SDEG 780
           +  G
Sbjct: 434 NPGG 437


>gi|302805691|ref|XP_002984596.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii]
 gi|300147578|gb|EFJ14241.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii]
          Length = 468

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 15/237 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E   A  +A   K+ F+ ++S+E+R+P+  IIG   L   +   +L  +Q +++
Sbjct: 16  ANKELQESQAAAEEASRAKSEFLANMSHEIRTPIHAIIGMASLALDT---NLTEEQREHL 72

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + ++ S+  LL++VN ILDLA ++AG ++L +    + DLL+   + +     + ++ + 
Sbjct: 73  DTVAQSADSLLHIVNTILDLAKIEAGRLELEHVPFNVCDLLSSTMKMLQVSARQKDLDMS 132

Query: 671 -VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFS 722
             +S       + D  RL Q    ++ NA+ F+ +GS  +   + D           +FS
Sbjct: 133 WEVSAEVPQQLIGDAGRLQQCILNLVGNAIKFTQRGSVFLNHVSNDPQRREEEAVCVLFS 192

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           VK+ G  I ++  K VF  F S A     R   G GLGLSIVE  + + GG + + S
Sbjct: 193 VKDTGIGISQEKQKEVFKAF-SQADTSITRLYGGTGLGLSIVERLVAMMGGRIWLES 248


>gi|218246315|ref|YP_002371686.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166793|gb|ACK65530.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 950

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 18/236 (7%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K + +++ ++ KN F+  + +E+R+PL  + G T LL  +    LN +Q ++V  I +S 
Sbjct: 276 KQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDT---PLNPQQEEFVNIIRSSG 332

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGK 676
             LL ++N+ILD + ++A  ++L      L   + EV +    +  +  + +  +I    
Sbjct: 333 ENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQLELAYLIEPNT 392

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------------NGDFIFSVK 724
             + V D  RL QI + +L NA+ F+ KG  V+  +A+             N +  F+VK
Sbjct: 393 PSAIVGDSTRLRQILANLLGNAVKFTEKGEVVVYVSAQPLPNSDRTDKTLANYELRFAVK 452

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           + G  I    C  +F  F        R+  G GLGL I +    L GG + + S++
Sbjct: 453 DTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKMWVHSTE 508


>gi|82702621|ref|YP_412187.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410686|gb|ABB74795.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 606

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 9/238 (3%)

Query: 553 RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQ 608
           R L ++ E  + A+ +   K+ F   +S+ELR+PL  I+G++ L+     G++NS+   +
Sbjct: 208 RFLAKEREMRKDAERVNHSKDEFFAMLSHELRNPLNAILGWSQLILQ---GTMNSESVRK 264

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E I  ++ I   L+ D+ +++ + AG + L    I L+ L   V  S         +R
Sbjct: 265 GIETIERNAKIQNKLIEDLFEMSRITAGKVTLELLRIDLSSLTEAVVDSAVPVAEAKKVR 324

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++ I D ++G  +AD  R  Q+   +LSNA+ F+     V +   R        VK++G 
Sbjct: 325 LRKIIDSEVGFVLADENRFQQVLWNLLSNAIKFTPAEGEVEIHVRRAGSRAEVKVKDSGI 384

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVG--LGLSIVESFINLHGGHVSISSSDEGVTTI 784
            I  +    VF+RF        R+ +G  LGL+IV+  + LH G V   S+ EG  ++
Sbjct: 385 GIKREFLPHVFDRFRQADSPASRQQIGLGLGLAIVKELVLLHRGTVIAESNGEGKGSV 442


>gi|150016429|ref|YP_001308683.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902894|gb|ABR33727.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 613

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 130/265 (49%), Gaps = 12/265 (4%)

Query: 539 MLTFVNVTDSVRAE---RALTEKNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           M   ++VT+  R E   +++ E+ + L   ++ D I+  F  ++S+ELR+P++ I     
Sbjct: 317 MKVAIDVTEKKRMEELQKSVEEERKKLYEIKEYDRIRTEFFSNISHELRTPISVIFSALQ 376

Query: 593 L----LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           +    LK     + +  + +Y + +  +   +L L+N+I+D+  +D+G   +N   I + 
Sbjct: 377 IHELRLKDCIFENRSIDKYKYTKIMKQNCYRILRLINNIIDITKIDSGYFNINEHNIDII 436

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+  +  S+A  +    + +   ++ +      D +++ +I   ILSNA+ F+S G  +
Sbjct: 437 ALIENITLSVADYIENKGLSLIFDTNVEEKIMSCDPEKIERIILNILSNAVKFTSSGGKI 496

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
            +            +K+ G  IP+D   S+F RF  V  +      G G+GLS+V+S + 
Sbjct: 497 TVSIEDCYDKICIKIKDTGRGIPQDKLNSIFERFIQVDKSLARDHEGSGIGLSLVKSLVE 556

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           LHGG +S+ S     T     IP K
Sbjct: 557 LHGGVISVKSKINYGTEFVIYIPCK 581


>gi|312889647|ref|ZP_07749196.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297869|gb|EFQ74989.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 656

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 11/225 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+   S+EL++PLT++ GF  +L +T   G   S   + ++ ++     L  LVND+
Sbjct: 437 KDEFIALASHELKTPLTSMSGFLQILERTVPDGIAKSFAEKALKQLAK----LNELVNDL 492

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLGSFVADRQR 686
            D++ + AG ++LN+    L+DLL+E+  +   T  H N   +K+ +DG+L     D+ R
Sbjct: 493 FDISKIQAGKLQLNFEPFDLSDLLDEITDTFEQTHPHYN---LKMAADGEL-LVSGDKMR 548

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+ + +L NA+ ++     V + A R   +   SVK+ G  I  +  + +F++F    
Sbjct: 549 LEQVLTNLLGNAVKYAPDAREVSMIAIRTGNEVRISVKDQGPGILPENQQHIFSQFYRVK 608

Query: 747 HRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + ++  G+GLGL I +  I+ HGG + + S+     T    +P+
Sbjct: 609 EQERKTSGLGLGLYISKDIIDRHGGRIWVESTPGHGATFTFSLPA 653


>gi|209774104|gb|ACI85364.1| sensor protein torS [Escherichia coli]
          Length = 904

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F+  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|254442741|ref|ZP_05056217.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257049|gb|EDY81357.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1289

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 138/264 (52%), Gaps = 29/264 (10%)

Query: 552  ERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            ER + ++ E L  A       D++K++F+ ++S+E+R+P+  IIGF  +L    +  +  
Sbjct: 881  ERTVNQRTEELEIAKSKAEHSDKLKSAFLANMSHEIRTPMNAIIGFLHILDNKDISDVER 940

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIAT 660
            +Q  ++  I  SS  L+ L++DILDL+ ++AG  +++     + +L +E+    ++S+ +
Sbjct: 941  EQFNHI--IRQSSKSLMALIDDILDLSAIEAGEAEISPQPCNVGELCDELGALFRESL-S 997

Query: 661  KMHENNIRIKVISD-------GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +  +NN+  ++  D       G     + D  RL QI   ++SN++ F+ +G   +  + 
Sbjct: 998  QDKKNNVDFRLTGDVPDHFLVGGATLVLIDPLRLKQILWNLISNSIKFTDEGEIHLGYSV 1057

Query: 714  RDNGDFI------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
              + + +      F V++ G  IP++  + +FNRF  +  A +   RG GLGL+I ++  
Sbjct: 1058 SQDKEMLEKASIEFIVQDTGIGIPKEEHQQIFNRFHKLDKAGKKLYRGTGLGLAITQTLT 1117

Query: 766  NLHGGHVSISSSDEGVTTINCRIP 789
             L  G +++ S+    TT     P
Sbjct: 1118 QLMEGRITVDSTPGLGTTFKVTFP 1141


>gi|162450211|ref|YP_001612578.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160793|emb|CAN92098.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 939

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 28/247 (11%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E   A   A++ K+ F+ ++S+ELR+PL  I+G+  +L+ S+   L+ +  + ++ I 
Sbjct: 434 LKEAKVAADAANKAKSDFLANMSHELRTPLNGILGYAQILRRSR--GLSEQDLRGIDVIH 491

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+ND+LDLA ++A  M+ + +   L   L    +    +  E  I +    D
Sbjct: 492 RSGAHLLTLINDVLDLAKIEAQAMEAHANDFHLPSFLRSTAEICRIRAEEKGIALVYTPD 551

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----------------------STVILK 711
            +L +  VAD +RL Q+   +L NA+ F+ KG                      S     
Sbjct: 552 PELPTDVVADERRLRQVLINLLGNAVKFTEKGRVSFTIKRLGDGPRPPYGSAPDSAANQS 611

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           A R      F +++ G+ I  D    +F  F   A  G+RR  G GLGL+I +  + L G
Sbjct: 612 APRRTHRVRFEIEDTGTGISPDQLDQIFLPF-KQASDGKRRVDGTGLGLAISQRIMKLLG 670

Query: 770 GHVSISS 776
             + + S
Sbjct: 671 SSIEVRS 677


>gi|149277545|ref|ZP_01883686.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149231778|gb|EDM37156.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 656

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 13/230 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K SF+  +S+E+R+PL ++IGF++ L  SKL   +  Q + ++ I+ SS ILL++VN +L
Sbjct: 285 KTSFLAGMSHEIRTPLNSVIGFSEQLGQSKL---DDTQREQLDAITNSSKILLDIVNQVL 341

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRL 687
           D +  + G M    +  +  D+L EV  +++ +     I I K        S   D  RL
Sbjct: 342 DFSKFETGKMVFERAPFIPQDILEEVFSTLSIQAVNKGISIAKSFDISPELSVKGDALRL 401

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            Q+   +L NA+ F+ +G  V +KA      +D    I  VK+ G  I ++    +F  F
Sbjct: 402 KQVLINLLGNAIKFTKEGE-VTIKATVSSDKKDQIRLIVWVKDTGVGISKENVNMIFGEF 460

Query: 743 --VSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V++A +   ++G GLGL+I +  I   GG++ ++S +   +     +P
Sbjct: 461 SQVASAQKDASQKGTGLGLAISKKIIEQQGGYIRVTSEEGKGSVFKFSLP 510


>gi|73539664|ref|YP_300031.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72123001|gb|AAZ65187.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 948

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 127/255 (49%), Gaps = 12/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VTD  R   AL E  +A       K  F+  +S+E+R+P+  I+G  +LL+ +   +L
Sbjct: 363 IDVTDVHRQAEALHEAKDAAEADLRAKEGFLAMMSHEIRTPMNGILGLVELLRNT---AL 419

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + +     S   L  +++DILD A ++AG + +  + + L +LL+ V   +  + 
Sbjct: 420 TPAQHRMLTLAHESGHALAQILDDILDYARIEAGRLAIVPAPVDLRELLDSVSSLLLPQA 479

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            +  ++++V +S     +  AD  R+ QI   +L NA+ F+ +GS V L A+ +  D   
Sbjct: 480 QQKGLQLRVHVSADVPATVRADGIRMRQILFNLLGNAIKFTDRGS-VTLHASAETSDGET 538

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +  V++ G  I       +F  F+       RR  G GLGL+I  S   + GG + +
Sbjct: 539 AALLLEVQDTGIGIASADMPRLFTPFMQGERSVTRRMGGTGLGLAISRSLAAMMGGSLVL 598

Query: 775 SSSDEGVTTINCRIP 789
           +S +   TT + R+P
Sbjct: 599 TSEEGTGTTASLRVP 613


>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1784

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +++ V++T+       L    E    A + K  F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +L   + KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++   
Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128

Query: 658  IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
             + K     I +       +  + + D  RL Q+   +++NA+ F+ +G  +    +++ 
Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              D+    FSV+++G  + E     +F  F        R+  G GLGL+I +  + L GG
Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248

Query: 771  HVSISS 776
             + + S
Sbjct: 1249 KIGVES 1254


>gi|110638476|ref|YP_678685.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110281157|gb|ABG59343.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 1158

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 17/238 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL +I+  + LL  +K  SL+ K+ ++ + I  S + LL L+N+IL
Sbjct: 473 KSEFLANMSHELRTPLNSILILSQLLADNKNKSLSEKEVEFAQNICNSGSDLLELINEIL 532

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQR 686
           DL+ V++G + L    + L+ + + +         +  I+ KV    KL   +   DRQR
Sbjct: 533 DLSKVESGKLDLEIEDVSLSKICSSIHAMFDEVAKKKLIQFKVNCSEKLLQTTVHTDRQR 592

Query: 687 LLQIFSKILSNAMDFSSKGSTVILK--AARDNGDF-----------IFSVKNNGSSIPED 733
           L QI   +LSNA  F+S    V  K  AA ++  F             SV + G  IP++
Sbjct: 593 LEQIIRNLLSNAFKFTSAKGAVTFKIEAASESTVFRNKNLNAHNCLALSVTDTGIGIPQN 652

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F  F  V  + + +  G GLGLSI        GG + + S ++  +T    IP
Sbjct: 653 KQQIIFEAFQQVDGSTKRKYGGTGLGLSISRELSTALGGEIHVFSEEDKGSTFTLFIP 710


>gi|260913806|ref|ZP_05920281.1| aerobic respiration control sensor protein ArcB [Pasteurella
           dagmatis ATCC 43325]
 gi|260632119|gb|EEX50295.1| aerobic respiration control sensor protein ArcB [Pasteurella
           dagmatis ATCC 43325]
          Length = 617

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V++ V AE+ L+   + + K    K   +  +S+ELR+PL  IIG + +L  S+   L  
Sbjct: 98  VSERVLAEKKLSIALDNIEKTSRDKTQLMATISHELRTPLNGIIGLSRILLDSE---LTD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ  Y++ I  S+  L ++ +DI+DL  +DA  ++L+   + L  LL ++         +
Sbjct: 155 KQRDYLKTIHISAISLGHIFSDIIDLEKIDARRIELSPKEVELQHLLADISNFGTLMAAD 214

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +  ++I    L  ++  D  R+ QI   ++ NA+ F+SKGS V L  + +  +  F V
Sbjct: 215 KKLCFQLIESSPLPQWLMLDYARVSQILWNLIGNAVKFTSKGS-VQLNVSTNENNIYFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  IP++    VF  +      GQ+  G G+GL++ ++   L GG +++ S      
Sbjct: 274 SDTGVGIPQEELHRVFEMYYQVKSSGQKPLGSGIGLAVSKTIAQLMGGDLTVESELGKGA 333

Query: 783 TINCRIPSKE 792
           +    +P KE
Sbjct: 334 SFTLTLPLKE 343


>gi|160884987|ref|ZP_02065990.1| hypothetical protein BACOVA_02983 [Bacteroides ovatus ATCC 8483]
 gi|156109337|gb|EDO11082.1| hypothetical protein BACOVA_02983 [Bacteroides ovatus ATCC 8483]
          Length = 482

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P+  I+   +LL+  ++G+LN +Q Q    I  +S  LL
Sbjct: 254 FKELDSAKTTFISTISHELKTPIAAIMMSLNLLEDKRVGALNDEQEQLSRSIKENSERLL 313

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG ++L        +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 314 SITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKL 373

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   VI+ A +D       V++ G  I     +S+F+
Sbjct: 374 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGARQDGNIIELYVQDFGKGIDPRYHQSIFD 433

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 434 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 468


>gi|91714551|gb|ABE54477.1| Hpt sensor hybrid histidine kinase [Shewanella denitrificans OS217]
          Length = 972

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 12/225 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A +IK+ F+ ++S+ELR+PL  +IGF   L+KT     L++ Q  Y++ I  S+T LL
Sbjct: 337 QEASQIKSEFLANMSHELRTPLNGVIGFARQLIKTP----LHASQLDYIKTIDRSATNLL 392

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG M+L      L + + E    IA       + + +  D  +   V
Sbjct: 393 GIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVIDIDENVPEHV 452

Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  R+ QI + ++ NA+ F+  GS    VIL A  D+       V + G  I +   +
Sbjct: 453 SGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTGIGIDDSQQE 512

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            +F  F        RR  G GLGL I +  IN  GG +  +SS E
Sbjct: 513 YLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSE 557


>gi|319952621|ref|YP_004163888.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM
           14237]
 gi|319421281|gb|ADV48390.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM
           14237]
          Length = 822

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 127/240 (52%), Gaps = 13/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           +E+L K+ E     +  VS++LR+PL  I G+++L++ +   SL  KQ  Y++ + +++T
Sbjct: 314 SESLLKSRE---QLISTVSHDLRTPLNTITGYSELMENT---SLTGKQIGYLKNVKSAAT 367

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL- 677
            + NLVND+LD + ++AG +K+     +L DL+ E  Q++        I ++++ D KL 
Sbjct: 368 YVDNLVNDLLDFSKLEAGKLKIENIPFLLPDLIQETAQNLEEFYKNKPIELQIVIDKKLH 427

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK----NNGSSIPED 733
            + + D  R+ QI + ++SNA  F+  G   ++       + ++  +    ++G  I ++
Sbjct: 428 KTLIGDPFRIRQILTNLISNAYKFTQDGFIKVVATVTIENNAVYKTRIQVIDSGIGIEKE 487

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +F  F       +++  G GLGL+I +    L  G +++ S  +  +T    IP K
Sbjct: 488 KQEHIFKEFAQADDSTEKKYGGYGLGLTISKKLTELLQGTINLKSDKDQGSTFTFTIPLK 547


>gi|256376438|ref|YP_003100098.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255920741|gb|ACU36252.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 549

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 5/249 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F +VT    A   L E N  L +A  +K  FV  VS+ELR+PLT ++ F +++  +  G 
Sbjct: 299 FRDVTADTAARVELEESNRVLAEAAAVKGRFVATVSHELRTPLTAVLAFAEMMPGA--GP 356

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN++   ++E I  ++  L+ LV+D+L L+ +++  + L+ + + +  LL E +   A  
Sbjct: 357 LNAEHLAHLEVIRRNTARLVRLVDDLLLLSRLESHRLPLSLAEVDVAGLLAEAEHDHANP 416

Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                I + V   DG       D  RL Q+   ++ NA+ F+  G  V +++  D   ++
Sbjct: 417 AESAGIELVVEPVDGP--KVRGDAVRLSQVLDNVIGNALKFTPAGGRVRVRSQVDPTGWL 474

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +V + G  IP      +F+ F    +     G GLGLSI    + LHGG++ + +++  
Sbjct: 475 ITVSDTGIGIPAADLPDLFDVFRRAGNSTGVPGSGLGLSICRQIMALHGGNIRVRAAEGR 534

Query: 781 VTTINCRIP 789
            TT+   +P
Sbjct: 535 GTTVELTLP 543


>gi|83745642|ref|ZP_00942700.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
 gi|83727719|gb|EAP74839.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
          Length = 668

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 129/265 (48%), Gaps = 8/265 (3%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           II L NA   +T    T++ R +   A +   E   +A  +K+ F+  VS+ELR+PL  +
Sbjct: 250 IIGLTNAAIDITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAV 309

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  LL          ++   +E I  S+   ++L++D+LD++ + +G + L    + L
Sbjct: 310 LGWAQLLAMRPYDEAMFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDL 367

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            D+L   +++I     +  I I       +     D  RL Q+F  +L+NA+ F+ +G  
Sbjct: 368 ADVLERARETIEPMARQKQIAIDT-EYPPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGH 426

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           + +         + +V++ G  I       VF+RF        RR  G+GLGL+I +  +
Sbjct: 427 IRVCVQASPEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLV 486

Query: 766 NLHGGHVSISSSDEGV-TTINCRIP 789
            LH G ++ +S+   + TT+   +P
Sbjct: 487 ELHHGRITAASNGANLGTTMAVTLP 511


>gi|320664373|gb|EFX31524.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 904

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F+  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|320659602|gb|EFX27165.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 904

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F+  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|171914541|ref|ZP_02930011.1| PAS/PAC Sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 385

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ + IK+ F+  +++ELR+PL  I+ +T++L TS   S  ++ +Q +  I  S+     
Sbjct: 117 KRQNSIKDHFLAVLAHELRTPLQAIMAWTEVLATSS--SAPAELAQGLAVIRESAKGQSR 174

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ D+LD++ + +G ++L    + L  ++      +        + ++      LG   A
Sbjct: 175 LIEDLLDVSRMVSGNIRLEVQPVDLAAIIQLSVDMLKPLACSREVLVQTSLSRSLGMAHA 234

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QIF  +L+NA+ F+  G  + L        F F + +NG  I       VF+RF
Sbjct: 235 DPIRLHQIFGNLLTNAIKFTPPGGHIHLHLDGTPSHFTFKIADNGQGINAAFLPYVFDRF 294

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           +       RR  G+GLGLSIV+  + LHGG +  +S   G
Sbjct: 295 LRGDTGTTRRHDGLGLGLSIVKHLVELHGGSIQAASDGLG 334


>gi|167628755|ref|YP_001679254.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167591495|gb|ABZ83243.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
          Length = 940

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 120/235 (51%), Gaps = 23/235 (9%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    E    A   K+ F+  +S+E+R+P+  ++G  +LL+ +    L+ +Q +YV  +
Sbjct: 414 ALARAKEEADLASRAKSDFLATMSHEIRTPMNGMLGMLELLEAT---PLDEEQREYVSVV 470

Query: 614 SASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATK-----MHEN 665
              S +LL+L+ND+LDL+ ++ G + L   ++ T  +   L  + + +A +     + E 
Sbjct: 471 RDCSNLLLSLINDVLDLSRIEKGAVSLEEKDFETKSMKRYLVSLIEPMAARKGLDFVSEF 530

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +  +  +  G       D  RL Q+   +L+NA+ F++KG  + L+A     +  F V++
Sbjct: 531 SPSVPPVLRG-------DPVRLRQVLLNLLNNAVKFTAKG-CITLRAYVTGNEITFEVED 582

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSS 777
            G  I E++  S+F  F +  H G      G GLGLSI    + L GG +S  ++
Sbjct: 583 TGPGILEEIRGSIFKPF-TRGHSGTDSMHGGAGLGLSICRRLVELMGGGISFETT 636


>gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
 gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
          Length = 872

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +  E    A++ K+ F+ ++S+E+R+PL  IIG T++L  S    L++ Q   + 
Sbjct: 364 EQDLVKAKEHAEAANQAKSIFLANMSHEIRTPLNGIIGMTEILADSH---LSAAQKDILN 420

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            + ASS  LL L+NDILDL+ +++G + L+     + +++ +    + +   +  + + V
Sbjct: 421 DVDASSHALLVLINDILDLSKIESGNLALSPHMASVREIIFDTVNMVNSHALKQEVTLHV 480

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             +D        D  R+ Q+   ++SNA+ FS +G+ ++  +  ++      V + G  I
Sbjct: 481 EFADHVPNHLELDEFRVKQVLMNLMSNAIKFSPQGNVIMRVSVVEHHGLSIEVADTGVGI 540

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            ED    +F  F        RR  G GLGL+I    ++L  G +S+ S
Sbjct: 541 AEDKLAEIFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVES 588


>gi|323139164|ref|ZP_08074220.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395547|gb|EFX98092.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 787

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 129/248 (52%), Gaps = 18/248 (7%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YV 610
           ER  TE  +AL  AD  K+ F+  +++ELR+PL  I     +L+   L   + + S+  V
Sbjct: 399 ERKKTE--QALIAADRRKDEFLATLAHELRNPLAPIHDAAHVLRRMSLTGPDGENSRALV 456

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-----EN 665
           E I      L+ LV+++L+++ +  G ++L    I   DL   ++Q++ T         +
Sbjct: 457 EIIDRQVGHLIRLVDELLEVSRITRGKIELMIERI---DLAAVIRQAVETSRPVIDRGGH 513

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +R++ + D  L    AD  R+ Q+F+ +L+NA  ++  G  ++++A R   + + +V +
Sbjct: 514 ALRVE-LPDAPL-PLDADPVRMTQVFTNLLNNAAKYTEPGGEIVVRADRRGREAVITVTD 571

Query: 726 NGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV- 781
           +G  IP +M   VF+ F        R Q  G+G+GL++V S + L GG V   S+  G  
Sbjct: 572 SGLGIPPEMLPRVFDLFTQVDRTLGRAQ-GGLGIGLALVRSLLKLQGGSVEAESAGLGRG 630

Query: 782 TTINCRIP 789
           TT   R+P
Sbjct: 631 TTFTIRLP 638


>gi|172038850|ref|YP_001805351.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700304|gb|ACB53285.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 854

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 25/257 (9%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ + ++   L KA+E KN  +  +++ELR PL N++GF DLL +    SL  K+   ++
Sbjct: 369 EQIVEQRTNELEKANEEKNQILDKINHELRIPLNNVLGFLDLLGSEH--SLTEKKDNSLQ 426

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +S  LL L N IL+ + V +G + +  + + L +L+  V +    +     + +  
Sbjct: 427 IIQENSQYLLRLFNQILEFSKVTSGEILIQCNIVNLENLVTTVLKQFEQQAEVKKLTLSY 486

Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--------- 721
             D ++  ++  D  +L++I S +L NA+ FS++G  + ++   DN  ++          
Sbjct: 487 SIDSEVFPYLKIDESKLIKILSNLLDNAIKFSNQG-IITIRVFCDNQAWLLDNEIDDYTD 545

Query: 722 ---------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                     ++++G+ IP ++ + VF+ F  +      +GVGLGLSI    ++L GG +
Sbjct: 546 DNFQKNLWIEIEDHGNGIPIEIQEKVFDPFFRSK---DNKGVGLGLSITHKLVDLMGGKI 602

Query: 773 SISSSDEGVTTINCRIP 789
            + S     T +    P
Sbjct: 603 YLKSQLGQGTIVQFHFP 619


>gi|169825762|ref|YP_001695920.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
 gi|168990250|gb|ACA37790.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
          Length = 466

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 5/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+  +++ELR+P+T I G+TD+L    L +    + +Y+  I   +  L  L+ D+ 
Sbjct: 234 REEFLSSIAHELRTPITFIKGYTDILYKRDLSA--QDRQKYLAIIREETNRLSRLIKDLF 291

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +D     +    + L      +K  ++    E +I  +V  +  L +  AD  RL 
Sbjct: 292 DLAKMDENSFIIEKQNLDLQAFFTGIKGKLSPAFQEKDIHFEVCCENGL-TLWADEARLE 350

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           QI   +L+NA+ +  +G T  +   + NG     +++ G  IP      +F RF  V  +
Sbjct: 351 QIIINLLNNALTYCGQGDTTTVNVKKVNGVLTIIIRDTGRGIPNKDLPFIFERFYRVEKS 410

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 G GLGL+IV+  +  HGG V++ S
Sbjct: 411 RSRALGGSGLGLAIVKELVQAHGGEVTVKS 440


>gi|162210777|ref|YP_562200.2| hybrid sensory histidine kinase BarA [Shewanella denitrificans
           OS217]
          Length = 950

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 12/225 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A +IK+ F+ ++S+ELR+PL  +IGF   L+KT     L++ Q  Y++ I  S+T LL
Sbjct: 315 QEASQIKSEFLANMSHELRTPLNGVIGFARQLIKTP----LHASQLDYIKTIDRSATNLL 370

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG M+L      L + + E    IA       + + +  D  +   V
Sbjct: 371 GIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVIDIDENVPEHV 430

Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  R+ QI + ++ NA+ F+  GS    VIL A  D+       V + G  I +   +
Sbjct: 431 SGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTGIGIDDSQQE 490

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            +F  F        RR  G GLGL I +  IN  GG +  +SS E
Sbjct: 491 YLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSE 535


>gi|237734688|ref|ZP_04565169.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382016|gb|EEO32107.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 639

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 135/247 (54%), Gaps = 14/247 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQ 608
           + E A+  KNE LR       + ++ +S++LR+PLT+I G   +L  +  GSL+ +K+ Q
Sbjct: 398 KEEAAIEAKNERLRA------NLLRSISHDLRTPLTSISGNASVLINNS-GSLDENKKMQ 450

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             E I   S  L+NLV ++L +  ++ G M L+  T ++ +++NE    I+ K  E+ I 
Sbjct: 451 LYEVIYDDSLWLINLVENLLSVTRIEDGKMNLHLETELIEEVINEALNHISHKKDEHRIE 510

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           +K   +  L     D   ++Q+   I+ NA+ ++ KGS + ++  + + DF+   + ++G
Sbjct: 511 VKANDEFILAKI--DAGLIIQVIINIVDNAIKYTPKGSMISIETFK-HKDFVEIQIADDG 567

Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           + I +   + +F  F +  H     RRG+GLGL++ ++ I  HGG++++  +    T  +
Sbjct: 568 AGISDKDKEKLFEMFYTVKHEVIDGRRGLGLGLALCKAIIVAHGGNIAVKDNIPHGTIFS 627

Query: 786 CRIPSKE 792
             +P KE
Sbjct: 628 FTLPIKE 634


>gi|144899476|emb|CAM76340.1| sensory box histidine kinase/response regulator [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 866

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 191/414 (46%), Gaps = 36/414 (8%)

Query: 395 PNGQTLHVIVTSNPRGG-TIWMFENLTVQVDL-------ETKYNTLVKVQGETIDHLSEG 446
           P+G+ LH+ VTS  R G  + + +N+T +  +       E +  T+++     +      
Sbjct: 198 PDGRVLHMAVTSAIRSGQVVGVTQNITERKRMVEAVEANERRLRTIIETTPLPL------ 251

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENR---LSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           V     + ++  +N +FR+L+   ++    +S GT  ++          E+ G D    +
Sbjct: 252 VITRAKEAKVLYANSSFRALFDIPDDYDGVISSGTFYQH--PEDRERLIETLGRD---GV 306

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-LTEKNEAL 562
           + +F+   ++  G     S   +  +++ L    ++   VN   +V+   A L    +A 
Sbjct: 307 VRNFEALGRTWSGRNFWAS---VTAAVLELDGEPSLFVAVNDITAVKKHEAELYAAKDAA 363

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A   K+ F+  +S+E+R+P+  II    LL  +    L ++Q  ++E +++S   L+ 
Sbjct: 364 EAAARTKSEFLAMMSHEIRTPMNGIIVMARLLLDT---DLTAEQRDWLEIVTSSGDTLMT 420

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++NDILD + +++G + +      L  L+  V + +  +  E  + I V    G  G   
Sbjct: 421 VLNDILDFSKLESGKLDIEELPFDLPALIGGVVELMRARAEEKGLSISVHYGAGVPGVIR 480

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKS 737
           AD  RL Q+   ++ NA+ F+  G   + L+  R +GD +   F+V++ G  IP +    
Sbjct: 481 ADPTRLRQVLLNLVGNAIKFTEMGGVHLELRVERRDGDDLILRFAVRDTGIGIPAEALTR 540

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F        RR  G GLGL I +  +NL GG + + S +   TT    +P
Sbjct: 541 LFAAFSQVDSSINRRFGGTGLGLVICQRLVNLMGGSIEVDSVEGYGTTFTFTLP 594


>gi|311031012|ref|ZP_07709102.1| two-component sensor histidine kinase [Bacillus sp. m3-13]
          Length = 745

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 116/213 (54%), Gaps = 2/213 (0%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K++ +K   + +VS++LR+PLT+II +T+LLK ++L +    +S Y+E I   S  L  L
Sbjct: 520 KSERLKTELITNVSHDLRTPLTSIITYTELLKKNELTT--EDRSAYLEIIDRKSQRLKGL 577

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + D+ +++ + +G ++L    + LN LL +      + + E+N++ +V +  K    + D
Sbjct: 578 IEDLFEVSKMASGNIELVKERVDLNQLLQQALAEYDSSLKESNLQFRVANTDKPLYAMVD 637

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q++ ++F  ++ N + +S + S V ++  + N     + KN       D  + ++ RF 
Sbjct: 638 GQKMWRVFDNLIGNIVKYSLENSRVYIQVQQFNDKAKITFKNVSKYELNDQSEELYERFK 697

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                    G GLGL+I +S I+LH G++ I +
Sbjct: 698 RGDTSRNTEGSGLGLAIAKSIIDLHEGNLDIET 730


>gi|317132921|ref|YP_004092235.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470900|gb|ADU27504.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 476

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 13/233 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  AD IKN F+  VS+ELR+PLT I G+ + ++    G  ++   + +  I+  +  L 
Sbjct: 248 LGTADRIKNDFISSVSHELRTPLTAIKGWAETIQGCAPGDTDTIH-KGMRVITDETGRLS 306

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENNIRIKVISDGKLG 678
            +V D+LD + + +G  ++    I   D+L E+ +++   + + H   +         L 
Sbjct: 307 AMVEDLLDFSRMQSGRFRMAIDKI---DILAEMGEAVLMFSDRAHREGLTFIYNEPASLP 363

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP-EDMCK 736
             + DR RL Q+F  IL NA  +S  G  V + A  D G+ +   V + G  IP  D+ +
Sbjct: 364 PMMGDRNRLRQVFVNILDNAFKYSDAGGVVKVDAI-DCGNHVRIIVSDTGCGIPARDLSR 422

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                F  NA    RRG G+GL++ +  + LHGG + I+S +   T +   +P
Sbjct: 423 VKQKFFKGNA---TRRGSGIGLAVADEIVCLHGGTLEIASEEGKGTAVTITLP 472


>gi|290954713|ref|YP_003485895.1| sensor kinase [Streptomyces scabiei 87.22]
 gi|260644239|emb|CBG67318.1| putative sensor kinase [Streptomyces scabiei 87.22]
          Length = 232

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 7/210 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           + + V  +++ELR+PLTNI G+ ++ +      L     + +  +   + +L ++++D+ 
Sbjct: 5   RKAMVSDIAHELRTPLTNIRGWLEVTRDG----LVEPDLELIASLHDEALLLQHIIDDLQ 60

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA  DAG + L+   +  +D++ +   +   +   ++IR+   +D  L    AD  R+ 
Sbjct: 61  DLAAADAGTLALHREPVRADDVVAQTVSAHRARAESSDIRLCTHTDPGL-VLDADPVRMR 119

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   + SNA+  +  G TV L A +D    +  V++ GS I  D    VF RF      
Sbjct: 120 QVLGNLTSNALRHTPAGGTVTLTARQDGDLAVLIVEDTGSGIAADDLPHVFERFWRAEKS 179

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776
             RR  G GLGLSIV  F+  H G V++ S
Sbjct: 180 RSRRTGGSGLGLSIVRQFVEAHEGTVTVDS 209


>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1782

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +++ V++T+       L    E    A + K  F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +L   + KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++   
Sbjct: 1072 EL---DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDM 1128

Query: 658  IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG----STVILKA 712
             + K     I +       +  + + D  RL Q+   +++NA+ F+ +G    S  +++ 
Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              D+    FSV+++G  + E     +F  F        R+  G GLGL+I +  + L GG
Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248

Query: 771  HVSISS 776
             + + S
Sbjct: 1249 KIGVES 1254


>gi|269926605|ref|YP_003323228.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790265|gb|ACZ42406.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 590

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 128/240 (53%), Gaps = 10/240 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R +TE     R+ ++ +  ++  +S++LR+PL+ +IG + +LKT        ++ + V
Sbjct: 345 AFRDMTE----FRRLEQAREEYLSLISHDLRTPLSVVIGHSQILKTLLREKGLEREERNV 400

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I      L  +V ++LD A+++AG +KL    + L   L +  + +    + + + + 
Sbjct: 401 DAIIGGGRQLTRMVENLLDRASLEAGAVKLKLQRVDLESWLPDAIERVTVPANRSRVHL- 459

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           VI  G   +   D  R+ ++   +++NA+ +S+  + VI++A   + + I SVK+ G  I
Sbjct: 460 VIERG--CTLDVDVDRIERVLGNLVTNALKYSAPETDVIVRAKVSSNNLIISVKDQGPGI 517

Query: 731 -PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            PED+ K +F ++    +RG+  G+GLGL I    +  HGGH+ + S     +T +  +P
Sbjct: 518 KPEDVPK-LFQKYY-RTNRGRNEGLGLGLYISRLIVEAHGGHIWVESEPSKGSTFSFSLP 575


>gi|223983037|ref|ZP_03633241.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM
           12042]
 gi|223964987|gb|EEF69295.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM
           12042]
          Length = 748

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 14/218 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASSTILLNLVND 626
           K  F+  +S+E+R+P+  I+G + +   S    LN   +  + +E I  SS  LL L+ND
Sbjct: 355 KTDFLSRMSHEIRTPMNAILGMSAIAAQS----LNDPDRVGECIEKIQLSSRFLLGLIND 410

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685
           ILD++ +++G + LN   +V   L+  V    A +     +R + + D  L + +  D  
Sbjct: 411 ILDMSRIESGKLLLNNGPLVTRRLIEGVSTLCAGQAAAKGVRYRCVVDPSLQTEYTGDSM 470

Query: 686 RLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +L Q+   ILSNA+ F+  G  V+L     +A ++N    F +++ G  I  +    +F 
Sbjct: 471 KLQQVLVNILSNAVKFTDSGGEVVLHASQVQAKKENAVVRFVIRDTGVGISPEFLPHLFE 530

Query: 741 RFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F   S        G GLGL+I +S ++L  G +S+ S
Sbjct: 531 PFSQESTGTTAAYGGSGLGLAISKSVVDLMDGRISVRS 568


>gi|190891398|ref|YP_001977940.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696677|gb|ACE90762.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 527

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 110/518 (21%), Positives = 212/518 (40%), Gaps = 51/518 (9%)

Query: 305 LTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           + H++E IL NL   + + D    +   N   +E+  +    L      DEL        
Sbjct: 13  MPHSFESILENLPQGVVLLDSANMVTAFNSRALEVLGLPEGALRKGMDIDEL-------- 64

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
             P   + +       S   + +     + LP+G+ + +    +  G  I  +E+++  +
Sbjct: 65  --PGTSDCRVAA---CSRSPTGKPQASQFALPDGRMISLTCAPSREGSWILSYEDISTLI 119

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +E             + ++  G+ +F    ++ L N ++  ++   +     GT + NI
Sbjct: 120 RVEDSLAEQHHRFDAALSNMPHGLCMFDSTRKLILCNDSYARMYNLPDRLTQAGTPLANI 179

Query: 484 AATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            A  +   N  +D    F  +  +      + Q  + L    +++ +  P+ N   + T 
Sbjct: 180 LAYRAEQGNGPADTATYFDVVFEATALGAPASQ-NIALTDGRIVKITHNPMQNGGYVATH 238

Query: 543 VNVTDSVRAERALTEKNEAL-------------------------RKADEIKNSFVQHVS 577
            +VT +VR    L   ++ L                         R  +E++  FV   S
Sbjct: 239 EDVTKTVRLAEELRRHHDQLEVTVRNRTAEVERQAREVERMLTQERNINELQRQFVAMAS 298

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAG 636
           +E R+PL  I      L   K G++  +  S   E I AS + +++L+  IL    +D G
Sbjct: 299 HEFRTPLAIIDAAAQRL-LRKGGAVEPEFLSDKAEQIRASVSRIVDLMESILSAGRLDTG 357

Query: 637 IMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
            + ++Y    L  L+     +QS  +K H   I I    DG L  F+ AD + L Q+F+ 
Sbjct: 358 TIDISYGACALRSLIRSCCERQSTISKTHSFVIDI----DG-LPEFIDADPRTLAQVFTN 412

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +LSNA+ ++   S + + A  + G+   S+ ++G  I  +    +F R+          G
Sbjct: 413 LLSNAVKYAPGTSEIRIAAWEETGNVRVSISDDGVGIDAEDVPLLFQRYFRARTSTGIAG 472

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G+GL++V+  + LH G + + S+    +T    +P K
Sbjct: 473 TGIGLNLVKQIVELHQGSIEVQSARGCGSTFTVTLPIK 510


>gi|153837192|ref|ZP_01989859.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149749609|gb|EDM60355.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 882

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 22/252 (8%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+ 
Sbjct: 359 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 415

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661
            Q + V+ I  SS  LL L+NDILDL+ +++G ++L   ++V  D+   V QS+    +K
Sbjct: 416 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 472

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713
                + + +  D  + + V  D  R+ QI + ++SNA+ F+ +G   +       L+  
Sbjct: 473 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYISVDVSYEEALEQG 532

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           R  G   F +K++G  I  D   ++F  F        R+  G GLGL+I    +++ GG 
Sbjct: 533 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 590

Query: 772 VSISSSDEGVTT 783
           + +++S +GV T
Sbjct: 591 L-VATSTKGVGT 601


>gi|194364225|ref|YP_002026835.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347029|gb|ACF50152.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 662

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 551 AERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           A   L +   A R A E    +K+ F+  +S+ELR+PLT I+G+++LL    L  +++  
Sbjct: 255 AREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELL----LQRVDNTS 310

Query: 607 SQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKM 662
             Y  +  I+ S+     L++D+LDL+++  G ++L    + L  +L E    Q +  + 
Sbjct: 311 PLYKGLGVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLCGVLGEAIGAQELVAEG 370

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              ++ +++     L   + D  RL Q+F  +LSNA+ F+     + +    D   ++ +
Sbjct: 371 KALDVHLQLPDRPSL--VLGDATRLQQVFWNLLSNAIKFTPAEGRIDVALQADGNHWVIT 428

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  +    +F+RF        RR  G+GLGL+IV+  + LHGG V+ +S   G
Sbjct: 429 VRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTAASEGHG 488

Query: 781 -VTTINCRIP 789
              T   R+P
Sbjct: 489 HGATFTVRLP 498


>gi|73538868|ref|YP_299235.1| PAS [Ralstonia eutropha JMP134]
 gi|72122205|gb|AAZ64391.1| PAS [Ralstonia eutropha JMP134]
          Length = 855

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 10/256 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +VT S  A+  +    +    A   K++F+  +S+E+R+P+  +IG  ++L  +   
Sbjct: 202 TARDVTQSRIAQLEIERARQEAEAASRAKSAFLAMISHEIRTPMNGVIGMIEVLTRT--- 258

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L++ Q + V  +  S+  LLN+++DILD + ++A  M++    + +   +  +  S+  
Sbjct: 259 TLSADQREMVATVRESAAALLNIIDDILDFSKIEADKMRIECVPLSIEHTVETLCASLVL 318

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDN 716
               NN+ + + I  G     + D  RL Q+   ++ NA+ FS     G  V L+ A   
Sbjct: 319 LAERNNVALYLDIDPGLPAQVLGDDLRLRQVLYNLVGNAIKFSGGALPGGRVYLRIAPAG 378

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           GD + F +++NG  +P D   ++F  FV        +  G GLGL+I      L GG ++
Sbjct: 379 GDVVRFEIEDNGIGMPPDAMATLFQPFVQAETTTTRRFGGTGLGLAICRRLTELMGGSIA 438

Query: 774 ISSSDEGVTTINCRIP 789
            +S      T    +P
Sbjct: 439 AASQPGAGATFTVCLP 454


>gi|308126279|ref|ZP_05908879.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308107066|gb|EFO44606.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 882

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 22/252 (8%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+ 
Sbjct: 359 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 415

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661
            Q + V+ I  SS  LL L+NDILDL+ +++G ++L   ++V  D+   V QS+    +K
Sbjct: 416 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 472

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713
                + + +  D  + + V  D  R+ QI + ++SNA+ F+ +G   +       L+  
Sbjct: 473 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYISVDVSYEEALEQG 532

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           R  G   F +K++G  I  D   ++F  F        R+  G GLGL+I    +++ GG 
Sbjct: 533 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 590

Query: 772 VSISSSDEGVTT 783
           + +++S +GV T
Sbjct: 591 L-VATSTKGVGT 601


>gi|294625970|ref|ZP_06704581.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292599708|gb|EFF43834.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 969

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 12/226 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616
           K E   +A   K  F+  + +E+R+P+T ++G ++LL KT++    +  Q  Y E I  +
Sbjct: 588 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQ----DPTQRSYTESIRRA 643

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL LVND LDLA +++G ++L++    +  L+ EV+  +A    E  +R   +  G 
Sbjct: 644 GAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 702

Query: 677 LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733
           LG   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  +
Sbjct: 703 LGDITASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINAE 762

Query: 734 MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F RF   +  +   R  G GLGL+I +      GGH+ + S
Sbjct: 763 QKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVIS 808


>gi|160872289|ref|ZP_02062421.1| sensory box histidine kinase/response regulator [Rickettsiella
           grylli]
 gi|159121088|gb|EDP46426.1| sensory box histidine kinase/response regulator [Rickettsiella
           grylli]
          Length = 369

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 127/256 (49%), Gaps = 20/256 (7%)

Query: 531 IPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           IPL  PN Q ++  + ++  + A +          +A+  K  F+ +++++LR+PL  II
Sbjct: 101 IPLYEPNTQKVIGIIGISLDITASK----------QAELAKQQFMMNMAHDLRTPLAGII 150

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   +    K       Q QY  +I  +   LL L+N ++D+  ++     LN+  I L+
Sbjct: 151 GIASIQANEK--KCLDDQQQYGRWIMEAGNQLLELLNAVMDVMALEEREDALNHDRIELS 208

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+ E+   +   +    +  +   D KL    +D  +L +I   ++SNA+ F+ KG+  
Sbjct: 209 HLMKELTDLMQPSIVAKGLHSEWQFDPKLPVITSDYMKLKRILLNLISNAIKFTEKGTVG 268

Query: 709 I---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
           +   L    DN   I   +K+ G  IP D  + +F++F     ++RG   G G+GL +V+
Sbjct: 269 VAIHLLGMNDNHARIEIQIKDTGIGIPSDQHEKIFDQFYRAHPSYRGVYSGYGVGLYLVK 328

Query: 763 SFINLHGGHVSISSSD 778
             ++L GG +++SS +
Sbjct: 329 KAVDLLGGKITVSSEE 344


>gi|163846960|ref|YP_001635004.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524780|ref|YP_002569251.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668249|gb|ABY34615.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448659|gb|ACM52925.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 751

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 6/217 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  K +F+  +S+ELR+PLT I G  DLL     G L  +Q  +VE I   +  + NL++
Sbjct: 505 DRAKTNFIGTISHELRTPLTVIRGNADLLARGLAGPLEDEQKSFVEAIRLQANNMTNLIS 564

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +++ +A +D+G +K     I +   + +       ++    +R++V    KL   +AD  
Sbjct: 565 NVITIANLDSGSLKSTLEPIEVQRPIEDAIWQTQGQIKAKGLRLEVEIPKKLPKVLADFD 624

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--- 742
            +  I  ++L NA  ++S G T+ ++           V + G  IP ++ + +F RF   
Sbjct: 625 HVRTIMLQLLDNARRYTSAG-TITVRVMPQPDTLRIEVSDTGRGIPPNLHQQIFERFFRG 683

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              S       RG+GLGL+I +  I   GG + + S+
Sbjct: 684 DGTSEGINSSERGIGLGLAICKQLIERLGGTIGVESA 720


>gi|317063078|ref|ZP_07927563.1| PAS/PAC sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688754|gb|EFS25589.1| PAS/PAC sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 451

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 33/349 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI-----RNIAATCSRYYNES 494
           ++ +S+G+ V   + +I L N A   L   EE+ L   + +     R I  + +   N +
Sbjct: 108 VESISDGIIVTDKENKILLINNAAEKLLNVEESELLDKSFLTAIPNRKIYDSITEVKNNN 167

Query: 495 DGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           D       I ++F     SL   +E  +   V   SII   N + +     + D  +   
Sbjct: 168 D-------IKSTFKQLEISLNSNVEKNIYCRVFINSIIG-KNKENLGIVTLLQDITK--- 216

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                   L++ D++K+ FV  VS+E R+PLT++    +LL    +G++N  Q + ++ I
Sbjct: 217 --------LKEIDQMKSDFVSTVSHEFRTPLTSMGMAVELLGDGSVGTINETQKELLKVI 268

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-- 671
              +  L  L+ D+LDL+ +++G   + +    +  ++     S+       N++I++  
Sbjct: 269 KEDNERLNFLIRDLLDLSRLESGKTHMKFEECSIKKIVETAVNSLKNFSENRNVKIEIRN 328

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVKNNGSS 729
           I D  L    AD  ++L + + +L+NA+ + S  +   +I++A +   + + SVK+NG  
Sbjct: 329 IKDSFL--VFADLNKILLVLTNLLTNAIKYKSEEREGNIIVEAFKKGKNIVVSVKDNGKG 386

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPE+  + +FN+F  V  ++ G+  G GLGLSI +  I  HGG + + S
Sbjct: 387 IPEEYKEKIFNKFIQVKISNDGKIEGTGLGLSICKEIIKAHGGEIWVDS 435


>gi|260897182|ref|ZP_05905678.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus Peru-466]
 gi|308087996|gb|EFO37691.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus Peru-466]
          Length = 718

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+   L  +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    DF   I  V++
Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDFATIIMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 TGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 500 STFTVSIHVP 509


>gi|225863841|ref|YP_002749219.1| sensory box histidine kinase [Bacillus cereus 03BB102]
 gi|225787888|gb|ACO28105.1| sensory box histidine kinase [Bacillus cereus 03BB102]
          Length = 355

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 131/242 (54%), Gaps = 13/242 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  S+  +   +  QY
Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GSQFHTNREECEQY 170

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+ S + +  L+ ++      ++ + ++  
Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 230

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 231 CIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQC 289

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           IP +    VF +F    +RG++       G G+GL+I  S   LH G +++ S++ E V 
Sbjct: 290 IPNENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVF 345

Query: 783 TI 784
           TI
Sbjct: 346 TI 347


>gi|325105302|ref|YP_004274956.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324974150|gb|ADY53134.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 491

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 117/220 (53%), Gaps = 5/220 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  ++ ++ K+ F+   S+EL++PLT+I  +  LL+ S     NS    Y+  + +    
Sbjct: 257 EDQKQIEKKKDEFLSIASHELKTPLTSIKAYVQLLERSLKAEDNSPVGTYIHRVQSQLDK 316

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-- 677
           L NL+ D+LD++ ++ G +KLN     L+ L++ V  +I  K    N++++++ +G+   
Sbjct: 317 LQNLITDLLDISKIENGKLKLNKRPFCLSSLIDNVVNTI--KHTYGNVQLEILQEGERLD 374

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              +AD  R+ Q+    L+NA+ ++     +I+K  +       SV + G+ I E+  KS
Sbjct: 375 REIIADENRVEQVLINYLTNALKYAPDSDKIIIKTEKMREFVKVSVTDFGTGISENNQKS 434

Query: 738 VFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
           +F++F        + +G+G+GL I    I  H G V I+S
Sbjct: 435 IFDKFYRVEETSVKFQGLGIGLYICSEIIRQHNGDVGINS 474


>gi|160938477|ref|ZP_02085832.1| hypothetical protein CLOBOL_03375 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438850|gb|EDP16607.1| hypothetical protein CLOBOL_03375 [Clostridium bolteae ATCC
           BAA-613]
          Length = 517

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +++++ ++ +S++LR+PLT+I G   +L +         +S+    I   S  L+NLV +
Sbjct: 287 QLRSNLLRSISHDLRTPLTSISGNAGVLMSDGENLSAEHRSRIYRDIYDDSMWLINLVEN 346

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +L +  ++   + L+  T +L ++++E  + I  +   + IR+  + D  L     D + 
Sbjct: 347 LLSITRMEGQGVHLHMETELLEEVIDEAMRHINRRHEHHTIRVNQVGDYILADM--DARL 404

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+ + ++ NA+ ++ +GST+++ + ++    +  V +NG  IP++  + +F  F +  
Sbjct: 405 IIQVITNLVDNAVKYTPEGSTIMVNSRQEGASAVIDVSDNGPGIPDESKEKIFEMFYTTG 464

Query: 747 HRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           H+    +RG+GLGL +  + ++ H G + +  +    +     +P+KE
Sbjct: 465 HKSADGKRGMGLGLPLCRAILSAHKGTIEVLDNKPAGSIFRLTLPAKE 512


>gi|154495975|ref|ZP_02034671.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC
           29799]
 gi|150274858|gb|EDN01914.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC
           29799]
          Length = 580

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 123/232 (53%), Gaps = 9/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++A+ I++ F  +VS+EL++PLT+I GFTD+L +  + S   ++ +++  I      L+
Sbjct: 348 LKRAEGIRSEFTANVSHELKTPLTSIKGFTDMLSSGMVKSEEDRK-RFLTMIGVEVDRLI 406

Query: 622 NLVNDILDLATVDA-GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            L+NDIL ++ +++  I +   ++ VL     E +  +     E  + + V     + + 
Sbjct: 407 ELINDILRISELESVAIDQCEEASDVLT-AARETQTLLEPAAKEAGVTLNVTGQNAMAAI 465

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
                RL ++   ++ N + ++ KG +V +  + D+      V + G  IPED  K VF 
Sbjct: 466 PV--SRLKELLLNLMENGVKYNVKGGSVNVNVSADSAWVTTVVSDTGIGIPEDARKRVFE 523

Query: 741 RFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF     +G+ R   G GLGL+IV+  I L+GG V++ S+    +T   ++P
Sbjct: 524 RFF-RVDKGRARKNGGTGLGLAIVKHIIQLYGGTVTLESTLGQGSTFTVKLP 574


>gi|148655456|ref|YP_001275661.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
 gi|148567566|gb|ABQ89711.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
          Length = 391

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 143/312 (45%), Gaps = 34/312 (10%)

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-----SI 530
           PGT  R + A C       DG+     I+   D           +L D + E+      +
Sbjct: 90  PGTRERALTAGC-------DGF-----ILKPIDPR---------MLPDQIAEFLGGKREL 128

Query: 531 IPLPNAQTMLTFVNVTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +P     TML   N     R E   R L+ +N  L++ D +K++F+  +S+ELR+PLT I
Sbjct: 129 LPKGMEMTMLREYNARLVERLEQQVRELSARNAELQELDRLKSTFLATLSHELRTPLTAI 188

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+ +L +    G L   Q Q +  I+ ++ IL  ++N++L L  V +   ++    +V+
Sbjct: 189 LGYLELFERRAFGLLTDVQGQAIGVIARNARILSRILNNLLYLQEVRSN--EIRRVPVVI 246

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +D++ E+   +    H  ++ +   S      ++ D   + Q    ++ NA+ F+     
Sbjct: 247 HDVVREIIAEMQPLAHAAHLELTS-SIQPTAVYMGDPIGIGQALRALIDNAVKFTPAPGR 305

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
           + +    +    +  V++ G  IP +  + +F  F  + +       GVGLGL+I    I
Sbjct: 306 ISVTVIDEPSRVLVRVEDTGIGIPAEAHEKIFLPFYQIDDTLARPYAGVGLGLAIARHVI 365

Query: 766 NLHGGHVSISSS 777
             HGG +S+ S+
Sbjct: 366 EAHGGQISVRSA 377


>gi|59713255|ref|YP_206030.1| hybrid two component sensor histidine kinase [Vibrio fischeri
           ES114]
 gi|59481503|gb|AAW87142.1| hybrid two component sensor histidine kinase [Vibrio fischeri
           ES114]
          Length = 575

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 8/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ L EK  A   ++     FV  +++ELR+PL  ++G  +L++ +++      Q + +E
Sbjct: 197 DKTLKEKKRA-ESSERATRDFVAMINHELRTPLNGLLGSAELMEDTEI---TDYQKKLLE 252

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S  +L  ++ND+LD + + AG+++L  +      L+  ++Q    +M E  +R  +
Sbjct: 253 TIHQSGQMLRIIINDLLDFSKMSAGMLELKMANFKPCILVKTIEQIFTPQMAEKCLRFDI 312

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I+D    + + D  R+ QI   ++ NA  F+  G  + LK        +  V + G  I
Sbjct: 313 HIADNLPQTLMGDIDRVQQILVNLIGNAFKFTKSGH-ISLKVGWQKNALVLIVSDTGCGI 371

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+D  K +F  F  V N+ + Q  G GLGLSI +  ++   G +S  S     +    ++
Sbjct: 372 PQDKQKLLFEPFTQVDNSSQRQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEFQVKL 431

Query: 789 P 789
           P
Sbjct: 432 P 432


>gi|117924315|ref|YP_864932.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117608071|gb|ABK43526.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 295

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 13/248 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E N+ L  ++E+K+ F+ H+  E+ +PL+ I+G    + T ++      +S     
Sbjct: 30  RKLEEVNKKLASSEELKSHFIAHMKNEINNPLSTILGMAQAMSTGRIQDPEQLKSLSATI 89

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              +  +   L N I   A V+AG   +   T  LND++ +V ++    +    I++ + 
Sbjct: 90  FHDAYDLDFQLRN-IFAAAEVEAGDTLVETVTTDLNDVIRDVLENFDHLLRAKQIQLTLP 148

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSI 730
            S  +   FV D  +   I S +LSNA++F+  G  ++L    ++ D  + ++ N+G++I
Sbjct: 149 ESLSQPRPFVTDTTKFRLILSNLLSNAIEFNQPGGEIVLTLGSEDQDAPLLTLYNSGATI 208

Query: 731 PEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           PE     +FNRF       +  HRG     GLGLSI ++ ++L GG +++ +  +G   +
Sbjct: 209 PEASLHDIFNRFTQLDTGTTKVHRGH----GLGLSICKALLDLLGGEITVKNQAQGGVEV 264

Query: 785 NCRIPSKE 792
           +  I S E
Sbjct: 265 SIWISSLE 272


>gi|319900474|ref|YP_004160202.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319415505|gb|ADV42616.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 725

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 20/238 (8%)

Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L +KN  L       + A+ +K+ F+Q++S+E+R+PL +I+GF+ L+    +     +
Sbjct: 472 RQLEKKNLELSVARDQAQSANRMKSIFIQNMSHEIRTPLNSIVGFSQLIANPDMELEPEE 531

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHE 664
           Q +Y E I ++S +L  LVND+L LA +++G     Y T +++   NE+  QS+AT +H 
Sbjct: 532 QQEYSELIVSNSELLTTLVNDLLGLAELESG----KYVTKLVSQRCNELCSQSVATTIHR 587

Query: 665 NNIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI 720
               +K+     +      + D QR+ Q+    L+NA   + +G   +  +  +  G   
Sbjct: 588 KPESVKLYYTSDVPDDYEILTDGQRVRQVLINFLTNAEKHTERGEIHLHCSLTEMPGCVT 647

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           FSV + G+ IP +  + +F RF   NA     +G GLGLSI     +  G  V + +S
Sbjct: 648 FSVTDTGTGIPAEQAEHIFGRFEKLNAF---DQGFGLGLSICRLIADYLGAVVKLDTS 702


>gi|146309327|ref|YP_001189792.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577528|gb|ABP87060.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 965

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++ + +K+ FV  VS+ELR+PLT I G   L+    LG +     Q +    A+S  L 
Sbjct: 480 VKRIERLKSEFVSTVSHELRTPLTAIAGSLGLINGGALGVVPEGMRQMLSIAQANSQRLS 539

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+ND+LD+  ++AG M+ +     L   L E   S      +  ++++++ D       
Sbjct: 540 HLINDLLDMDKLEAGKMQFDLQPCELAGQLEEALASNQAYAAQRQVQLRLL-DCPPVRVR 598

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+ +  +SNA+ +S     V+L+A R +      V + GS I       +F +
Sbjct: 599 VDNMRLQQVLANFISNAVKYSPPAGEVLLRAERRDTRVRVEVSDQGSGIAAAFRDRIFAK 658

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           F S A     R   G GLGL+I +  I   GG +   S
Sbjct: 659 F-SQADASDSREKGGTGLGLAISKELIERMGGQIGFDS 695


>gi|325288661|ref|YP_004264842.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964062|gb|ADY54841.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 410

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 127/241 (52%), Gaps = 17/241 (7%)

Query: 559 NEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           N ALR   KA E +  FV   S+ELR+PLT I+    +L + +  ++  KQ ++VE   A
Sbjct: 175 NLALRPVEKAWEQQKRFVADASHELRTPLTVILANIGILLSHRKDTIE-KQYKWVENTQA 233

Query: 616 SSTILLNLVNDILDLATVDA-----GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            ++ +  LV+D+L LA +DA        +LN+S IV + LL    + IA   +E  I + 
Sbjct: 234 EASRMKKLVDDLLFLAKLDAVQKPVQQTELNFSDIVWSSLLP--FEPIA---YEQGIEVS 288

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              D  + S   D  +L Q+ + +L NA  ++ +   V L    D    + SV N G  I
Sbjct: 289 SEIDPDI-SLNGDAGQLKQLVAILLDNACKYAGQNGKVTLTLKNDKDQALLSVNNTGEPI 347

Query: 731 PEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  + VF RF  +++ R +++ G GLGLSI ++ +  HGG +S  S+ +  TT   RI
Sbjct: 348 PIEHLEHVFKRFYRADSSRIRKQGGYGLGLSIAQTIVESHGGGISAESNGQDGTTFIVRI 407

Query: 789 P 789
           P
Sbjct: 408 P 408


>gi|323436007|ref|ZP_01049656.2| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
 gi|321496322|gb|EAQ39628.2| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
          Length = 550

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R ++ +  +N+ L +    KN F   V+++LRSPL+++I F D+LK  +  S   + +  
Sbjct: 309 RKDKMIAAQNKRLSEVVATKNKFFSIVAHDLRSPLSSVINFLDVLKQEEFKS--KQTAAI 366

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENN 666
           ++ +  SS   ++L++++L  + ++ G +K  Y  I L D+L   K  I   +  + +  
Sbjct: 367 IDSLEDSSRNSISLLDNLLKWSKLETGQIK--YEPIPL-DILAITKDQIKVYSDNLKQKG 423

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +++ S  K G+   D+  +  +   +LSNA+ FS+    ++++ ++   DFIF++++N
Sbjct: 424 INVRLESSFK-GTVEGDKNMIATVIRNLLSNAIKFSNDNDIIVIEFSKTAQDFIFTIEDN 482

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  + +   K +F+   +   +G R  +G GLGL +   FI  H G +SI S +   T +
Sbjct: 483 GIGMTDAFRKKIFSLTETTVQKGTRNEKGSGLGLILSNEFIKTHNGDLSIESQEGKGTIV 542

Query: 785 NCRIPSK 791
              +P K
Sbjct: 543 TFTLPLK 549


>gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
 gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
          Length = 918

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNTTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL   R   +        +++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTENGNIDILVEKRSISNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|228986322|ref|ZP_04146459.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773349|gb|EEM21778.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 448

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +    +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDAIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           I S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 447


>gi|217423415|ref|ZP_03454916.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
 gi|217393273|gb|EEC33294.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
          Length = 693

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +G   +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|207739510|ref|YP_002257903.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
 gi|206592889|emb|CAQ59795.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
          Length = 675

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 129/265 (48%), Gaps = 8/265 (3%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           II L NA   +T    T++ R +   A +   E   +A  +K+ F+  VS+ELR+PL  +
Sbjct: 257 IIGLTNAAIDITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAV 316

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  LL          ++   +E I  S+   ++L++D+LD++ + +G + L    + L
Sbjct: 317 LGWAQLLAMRPYDEAMFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDL 374

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            D+L   +++I     +  I I       +     D  RL Q+F  +L+NA+ F+ +G  
Sbjct: 375 ADVLERARETIEPMARQKQIAIDT-EYPPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGH 433

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           + +         + +V++ G  I       VF+RF        RR  G+GLGL+I +  +
Sbjct: 434 IRVCVQASPEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLV 493

Query: 766 NLHGGHVSISSSDEGV-TTINCRIP 789
            LH G ++ +S+   + TT+   +P
Sbjct: 494 ELHHGRITAASNGANLGTTMAVTLP 518


>gi|168004942|ref|XP_001755170.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162693763|gb|EDQ80114.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 336

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 14/222 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +A   K+ F+ ++S+E+R+P+  IIG   L L+T     L  +Q +++E ++ S+  LL+
Sbjct: 2   EASRAKSEFLANMSHEIRTPIHGIIGMASLALETD----LTDEQREHLETVAQSADCLLH 57

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
           +VN ILDLA ++AG ++L      + D +    + +  K ++  +R+    D  + +  +
Sbjct: 58  IVNAILDLAKIEAGRVELERVQFSVFDTVASTIKMLQVKANQKQLRVSWEVDPDIPAHLI 117

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPEDMCKS 737
            D  RL Q    ++ NA+ F+ +GS       K  RDN    +FSV++ G  I ++  K 
Sbjct: 118 GDAGRLQQCLINLVGNAIKFTQEGSLASQTETKVDRDNKVTLLFSVQDTGIGISKEKQKE 177

Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           VF  F S A     R   G GLGLSIVE  + + GG + + S
Sbjct: 178 VFKAF-SQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWLES 218


>gi|119504270|ref|ZP_01626350.1| Sensory transduction histidine kinase [marine gamma proteobacterium
           HTCC2080]
 gi|119459778|gb|EAW40873.1| Sensory transduction histidine kinase [marine gamma proteobacterium
           HTCC2080]
          Length = 819

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  ++G  +LL  +KL   +++Q + ++ IS S   LL ++NDILD +
Sbjct: 167 FLANMSHEIRTPMNGVVGMIELLNLTKL---DAEQHEMLQTISDSGQSLLTIINDILDFS 223

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
             +AG +++      L   L    Q++A    +N+++I V  + G     + D  R  QI
Sbjct: 224 KFEAGKLEIEEIETTLVTFLESTAQTLAPSALKNDVQIIVHAAAGTPDQLMLDPVRTGQI 283

Query: 691 FSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
              + SNA+ FS  G  V++KA R      D      SV + G  I  +  K++F  F  
Sbjct: 284 LINLASNAIKFSD-GGEVLVKAERIDPTHEDKTSLRLSVVDQGIGISAEAQKNLFQDFSQ 342

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 R+  G GLGL+I +    + GG + + S     +T  C IP
Sbjct: 343 ADSSTTRKYGGTGLGLAISKRLTEMMGGTIGVKSCPGEGSTFYCEIP 389


>gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
 gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
          Length = 1969

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 20/249 (8%)

Query: 541  TFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            TFV++ D V AER    AL    E+  +A++ K+SF+ ++S+E+R+P+  IIG   LLK 
Sbjct: 1198 TFVSMFDDVTAEREAAEALRLAKESAEEANQAKSSFLANMSHEIRTPMNAIIGLAHLLKR 1257

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                    +Q   +E +S ++  LL ++NDILD + ++AG M L      L ++++ V+ 
Sbjct: 1258 DA----TPQQVGQLEKVSDAAQHLLRIINDILDFSKIEAGKMILEPMDFELENVIDTVRS 1313

Query: 657  SIATKMHENNIR-IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++ K  +  +  I  I+D  L  ++  D  RL QI     +NA+ F++ GS + L A +
Sbjct: 1314 LLSEKAVDKGLEFITNIAD--LPQYLHGDGLRLGQILLNFAANAVKFTTNGS-ISLHAEQ 1370

Query: 715  --DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
              +  D I   F+V + G  + E   + +F  F        R+  G GLGL+I     +L
Sbjct: 1371 LGEESDTIWIRFTVSDTGVGMTEAQQRHLFEAFEQGDRSTTRQFGGTGLGLAISRKLTDL 1430

Query: 768  HGGHVSISS 776
             GG + + S
Sbjct: 1431 MGGEIGVKS 1439


>gi|308050142|ref|YP_003913708.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
 gi|307632332|gb|ADN76634.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
          Length = 928

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K +F+  +S+E+R+P+  I+G  +L+  +    L  +Q  Y++ I  S   LL+++ND+L
Sbjct: 448 KTTFLATMSHEIRTPMNGILGTAELMADA---DLTPQQRHYLDVIHRSGEALLDVLNDVL 504

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + ++AG + +    +V+  L+  V  ++A++  +  + +++   G L  +++ D  +L
Sbjct: 505 DYSKIEAGHLSVVEEPVVVEALVQSVLDTLASRAAQKGLSLRMAVRGTLAPAYLGDHAKL 564

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   ++ NA+ F+++G   +  +A D G    +V++ G  I  +  +SVF  F  +  
Sbjct: 565 RQVLLNLVGNAIKFTAQGEVRVALSA-DGGTLRLAVEDTGMGIELERQRSVFEPFQQSRS 623

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             Q  G GLGL I        GG +S++S+    +     +P  E
Sbjct: 624 GEQWGGTGLGLPISRRLCEAMGGDLSLASTPGHGSVFTLTLPWPE 668


>gi|146313279|ref|YP_001178353.1| aerobic respiration control sensor protein ArcB [Enterobacter sp.
           638]
 gi|145320155|gb|ABP62302.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter sp. 638]
          Length = 777

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L S+Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENLSGLQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    V D  RL QI   ++SNA+ F+ +G  V+++   D GD + F V+++G
Sbjct: 381 VLEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQGE-VVVRIRFDQGDMLHFEVQDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V +++ G+   G G+GL++        GG +++SS   +G T 
Sbjct: 440 IGIPQDEHDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKSMGGDITVSSQQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    P+
Sbjct: 500 TLTVHAPA 507


>gi|89094752|ref|ZP_01167687.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92]
 gi|89081006|gb|EAR60243.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92]
          Length = 881

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 126/249 (50%), Gaps = 17/249 (6%)

Query: 555 LTEKNEALRKADEIKNS-------FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L ++N+AL KA +  NS       F+  +S+ELR+PLT++ GF  LL  ++   L + Q 
Sbjct: 263 LEKQNQALDKARKRANSANLAKDEFLARMSHELRTPLTSVSGFARLLDQTE---LKTDQK 319

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I+ +S +LL++++DILD + +++  ++L        + + +V +      H+  +
Sbjct: 320 EYTRIINLTSGLLLSIIDDILDYSKLESNAIELEEIPFDFENCILDVLEMQTAAAHDKGL 379

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
            +  + + +   F V D  RL QI + ++SN++ F+S+G   I     K +         
Sbjct: 380 ELVPVIESETPKFLVGDPVRLRQILTNLISNSVKFTSQGHVCIHVVPTKISPVESKLKII 439

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G+ IP+D   ++F  F        R+  G GLGL I +    L  G +S+ S +  
Sbjct: 440 VEDTGTGIPQDSIDNLFQAFSQADTSITRKYGGSGLGLVIAKRLTELMSGEISLESKEGK 499

Query: 781 VTTINCRIP 789
            T I   IP
Sbjct: 500 GTQITLNIP 508


>gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 669

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  E   KA++ K+ F+ ++S+E+R+P+  IIG  DLLK ++L   N+ Q +Y++ 
Sbjct: 283 QELEKAKEEADKANKAKSEFLANISHEIRTPMNGIIGIIDLLKVTEL---NNNQKEYLDM 339

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S SS +LL ++N ILD++ +++G  +L      +   L+ + + ++    + N+ +   
Sbjct: 340 LSNSSRLLLGILNTILDISKIESGKFELILKPFNMKKTLDRITKELSIACSKKNLEVFYY 399

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727
            D  +    + D  RL Q+   I++NA+ F+  G  +     L    +     FSVK+ G
Sbjct: 400 IDPYINFDLIGDEIRLNQVLINIINNAIKFTEMGQIMFKVRKLNTTNNKLTLEFSVKDTG 459

Query: 728 SSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHV 772
             I E+    +F +F+     +  +  G GLGL+I +    L  G +
Sbjct: 460 IGIKEEFKNDIFKKFIQQDMTYTKKYDGTGLGLAISKDIAKLMNGDI 506


>gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1135

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 7/229 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  KN AL++ D++KN F+ + S+EL++PL  IIG  + L     G L+   S  +  
Sbjct: 418 QKLETKNAALQEMDQLKNEFLANTSHELKTPLNGIIGIAESLIDGATGELSQPTSSNLSL 477

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   L  LVND+LD + +    + L    + + ++   V   + ++    N ++++I
Sbjct: 478 IVSSGKRLTQLVNDLLDFSALKHKQINLRIKPVGMREITEVVL--LLSRPLVGNKKLQLI 535

Query: 673 SD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +     +    AD  RL QI   ++ NA+ F+ +G T+ + A   N     +V + G  I
Sbjct: 536 NQVSSSIPPVDADENRLQQILYNLVGNAIKFTERG-TIKVSAEVVNYYLKITVSDTGIGI 594

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           P D    +F  F        R+  GVGLGL++ +  + LHGG + + S+
Sbjct: 595 PPDKLDRIFEAFEQGDGSINRKYGGVGLGLAVTKKLVQLHGGDIDVEST 643


>gi|329935640|ref|ZP_08285447.1| two component system sensor kinase [Streptomyces griseoaurantiacus
           M045]
 gi|329304901|gb|EGG48772.1| two component system sensor kinase [Streptomyces griseoaurantiacus
           M045]
          Length = 580

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 14/245 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---SKLGSLNSKQ 606
           R   AL +K   +   +E    FV  +S+ELR+PLT I   T++L+    ++ GS++   
Sbjct: 312 RTAEALEKKVADMSSREEASRRFVADMSHELRTPLTAITAVTEVLEEELDAETGSVDPMI 371

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  + + +  L +LV +++++   DAG  +L    +   DL +++   I  +   + 
Sbjct: 372 EPAVRLVVSETRRLNDLVENLMEVTRFDAGTARLVLDHV---DLADQITACIDARAWLDA 428

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    D + G     D +RL  I + ++ NA+     GS V +    D  D +  V++
Sbjct: 429 VEL----DAERGLMANLDPRRLDVILANLIGNALKHG--GSPVRVAVRTDGEDLLIQVRD 482

Query: 726 NGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +G  IPE++   VF+RF  ++A R +  G GLGLSI     ++HGG ++ ++S EG    
Sbjct: 483 HGPGIPEEVLPHVFDRFYKASASRPRSEGSGLGLSIAMENAHIHGGGITAANSPEGGAVF 542

Query: 785 NCRIP 789
             R+P
Sbjct: 543 TLRLP 547


>gi|78355304|ref|YP_386753.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78217709|gb|ABB37058.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 847

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 114/221 (51%), Gaps = 11/221 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  ++G   +L        + K  +       S   LL ++NDILD +T+DA
Sbjct: 468 MSHEIRTPLNGVLGMLQILGNE---ITDPKPLRLTRTALDSGRKLLAIINDILDFSTIDA 524

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G   L+++ + + + +N V  + + ++ +  + +  + D  +    V D  R+ QI   +
Sbjct: 525 GAAPLDHAPLRIRETVNSVLANFSEEVRQKGLTLTAVVDRAVPDVLVGDESRIRQILFNL 584

Query: 695 LSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           + NA+ F+ +GS      ++   A +    + +V++ G  +  +M   +F+ F  V   +
Sbjct: 585 VGNAVKFTREGSVRVDVLLLTAPADEEARLLVTVEDTGIGMEAEMLPRIFDPFFQVDGTY 644

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           R + +G GLGL IV S +++  G++S+ S+    TTI C +
Sbjct: 645 RRRYQGTGLGLGIVRSLVSMMNGNISVESTPGVGTTICCSL 685


>gi|83950180|ref|ZP_00958913.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
 gi|83838079|gb|EAP77375.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
          Length = 472

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  ++E  ++A   K+ F+  VS+ELR+PLT+I G  DL+    LG +  K    +    
Sbjct: 214 LQTEHEKTKEASAAKSEFLATVSHELRTPLTSIKGSLDLIAARALGEIPPKMEPILTIAQ 273

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK---MHENNIRIKV 671
            +ST L  L+ND+LDL  ++AG  +++Y    LN     ++QSIAT        ++  ++
Sbjct: 274 RNSTRLNALINDLLDLQKMEAG--RMDYFMEELNA-AEFLEQSIATNEPFAQRFDVTFEL 330

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      D  RL Q+ S ILSNA  FS  GSTV +++         SV + G  +P
Sbjct: 331 EPTPANLFITCDASRLDQVLSNILSNAAKFSETGSTVSIRSDVVGAMLRVSVIDRGVGLP 390

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E++ + VF+ F       +R+  G GLG++I +  +  H G +    ++   TT    +P
Sbjct: 391 ENVKQKVFDEFSQLDSSDKRKVGGTGLGMNISKRIMEAHDGRIDYVKNEGPGTTFFIELP 450


>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1175

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 123/274 (44%), Gaps = 38/274 (13%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+ V+A + L +  E   +A   K+ F+ ++S+E+R+P+  +IG T LL  +    L+
Sbjct: 376 DVTELVKARQDLIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDT---DLD 432

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+Q  Y   + +S+  LL ++NDILD + ++AG + +      L  +L +    +A K  
Sbjct: 433 SEQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAE 492

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------------ 710
           E  + +    D  + S V  D  RL QI   ++ NA+ F+  G   I             
Sbjct: 493 EKGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVSKSEVVDQRSE 552

Query: 711 -------------KAARDN-GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
                           +D  GD       F +++ G  IP+D   S+F  F        R
Sbjct: 553 VSDQPANRLSHEQTGIKDQYGDSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVDASTTR 612

Query: 752 R--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           +  G GLGL+I      + GG   + S  D+G T
Sbjct: 613 KFGGTGLGLAISRQLAEMMGGTAGLESVEDQGST 646


>gi|253573668|ref|ZP_04851011.1| sensor histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847196|gb|EES75201.1| sensor histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 363

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 126/260 (48%), Gaps = 7/260 (2%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+ N   +      TD  R    L    E  R+A++ KN  + +VS++LR+PLT+I G+
Sbjct: 104 IPVQNVGQLGQLA--TDINRMIDRLVTSIEDERRAEQTKNELITNVSHDLRTPLTSITGY 161

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L++  +      +   YV      S  L  L+ D+ +   +    MKL +  I L ++
Sbjct: 162 LGLIEEDRYRD-EVELRYYVSMAYEESLRLKQLLQDLFEYTRMQNKEMKLEFRRINLAEM 220

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L+++      ++ EN +  ++   G L    AD  +L +++  +++NA+ +   G  + +
Sbjct: 221 LHQMAAHFGWQLQENGMECRLYLHGPL-YVQADGDKLRRVYENLMTNAIRYGHDGKYLDI 279

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
           +  ++  + I  V N G  IP      +F+RF  V  +   Q  G G+GL+I +  ++LH
Sbjct: 280 RGWQEGDEIITEVVNYGDPIPTVDLPHLFDRFYRVEKSRASQTGGSGIGLAIAKHIVDLH 339

Query: 769 GGHVSISSSDEGVTTINCRI 788
            G +S + S+E  T    R+
Sbjct: 340 HGTIS-ADSNEYRTAFTVRL 358


>gi|94312913|ref|YP_586122.1| signal transduction histidine protein kinase [Cupriavidus
           metallidurans CH34]
 gi|93356765|gb|ABF10853.1| signal transduction histidine protein kinase [Cupriavidus
           metallidurans CH34]
          Length = 1156

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 15/262 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           F  + D V A++ L +K  + ++A E     +++F   +S+E+R+PL  ++G  +LL  S
Sbjct: 506 FCAIQD-VTAQQQLEQKLRSAQQATEAMMRARSNFFAAMSHEIRTPLNALLGNLELLGRS 564

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L +  ++ +  + +SS  L  +VNDILD + +DAG MKL  +     D L  +  S
Sbjct: 565 --AGLEAHATR-LRALQSSSEGLRRIVNDILDFSKIDAGEMKLVSAPFNPLDELESLSLS 621

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKA 712
            A  + +  IR        L + +  DR RL QI + +L NA  F++ G    S  I + 
Sbjct: 622 YAPMVTDRPIRFYAHLSPTLSTLLRGDRMRLAQIVNNLLGNAFKFTASGKISLSAEISRD 681

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGG 770
           A+     +  V++ G  + + +   VF  FV    +   Q  G GLGLSI      L GG
Sbjct: 682 AQGLATLVCRVRDTGDGMSQALASRVFQPFVQGETSTTAQYSGTGLGLSICARLSELMGG 741

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
           H+S+ S +   +     IP  E
Sbjct: 742 HISVESVEGVGSAFTVVIPFAE 763


>gi|328470983|gb|EGF41894.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329]
          Length = 878

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 22/252 (8%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+ 
Sbjct: 355 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSP 411

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661
            Q + V+ I  SS  LL L+NDILDL+ +++G ++L   ++V  D+   V QS+    +K
Sbjct: 412 HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLEL---SLVEADIREVVYQSVILFQSK 468

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAA 713
                + + +  D  + + V  D  R+ QI + ++SNA+ F+ +G   +       L+  
Sbjct: 469 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYISVDVSYEEALEQG 528

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           R  G   F +K++G  I  D   ++F  F        R+  G GLGL+I    +++ GG 
Sbjct: 529 R--GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGK 586

Query: 772 VSISSSDEGVTT 783
           + +++S +GV T
Sbjct: 587 L-VATSTKGVGT 597


>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
 gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
          Length = 717

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 108/214 (50%), Gaps = 16/214 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  IIGFTD+L  +    L+ +Q ++ + I  S++ LL+L+NDIL
Sbjct: 198 KSEFLAAMSHEIRTPMNGIIGFTDMLLDT---GLDEEQQEFAQTIKRSASALLSLINDIL 254

Query: 629 DLATVDAGIMKLNY----STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           D + V+AG + L        I   D+ + V+  +A++  E   R   I D    + + D 
Sbjct: 255 DFSKVEAGKLDLECIPFDPEITAQDVCDLVRPKVASRPIEVLCR---IDDTLPANVMGDP 311

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----VKNNGSSIPEDMCKSVFN 740
            R  Q+   ++ N+  F+ KG   +  A  D  +   +    +++ G  IPE+  +S+F 
Sbjct: 312 GRYRQVLVNLMGNSAKFTKKGELELAIAVDDETEETITLHARIRDTGIGIPEEKLESIFE 371

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            F        R   G GLGLSI      L  GHV
Sbjct: 372 AFRQADGSTTREYGGTGLGLSICRKIAALMHGHV 405


>gi|300214818|gb|ADJ79234.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 307

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 7/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E NE +++ +E +  F    ++E+R+PLT I G  + L    +   + ++S  +E 
Sbjct: 64  QSLRESNEEIKRQEERRRQFFADAAHEMRTPLTTINGLLEGLAYDAIPEESKEKS--IEL 121

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L+ LVN+ LD   + +G ++L+ +   +  +LN + + +  K  +   + ++ 
Sbjct: 122 MRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQLRNKAEQVGDKFELY 181

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  KL  + AD  RL+QI   I  NA+ F+  G  + + A + N + I  + +NG  + E
Sbjct: 182 TPDKLMVY-ADYDRLVQIIFNITQNAIQFTENG-VISISAEKGNEETIIRISDNGIGMNE 239

Query: 733 DMCKSVFNRF--VSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  ++++ R+     + +  + G  GLGLSIV   + LH G V++ S +   TT   R P
Sbjct: 240 EQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTVESKEGKGTTFTLRFP 299

Query: 790 SK 791
           +K
Sbjct: 300 NK 301


>gi|302878541|ref|YP_003847105.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581330|gb|ADL55341.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1115

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 133/262 (50%), Gaps = 12/262 (4%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D  +  S  P+   +      ++T+  +  + L    E    A+  K+ F+ ++S+E+R+
Sbjct: 572 DVSVAVSYAPIAGGRLFCFVKDITERKQQAKLLEAAREKAESANRAKSDFLANMSHEIRT 631

Query: 583 PLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           P+  +IGF++L     L   N   Q  +++ I  SS  LL ++NDILD + +++  M L 
Sbjct: 632 PMNAVIGFSEL----ALDDPNPVSQRAHLQQIIESSRSLLGILNDILDFSKIESRQMTLE 687

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMD 700
              + L++LL +V++    +  E  + + V  +  + + +  D  RL QI + +L NA+ 
Sbjct: 688 MEVLNLDELLGQVRRMFVMQAKERTLDLVVAREAGVPNILTGDPLRLRQILTNLLGNAIK 747

Query: 701 FSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           F+++G+  + ++A + N + +   F VK++G  +      S+F  FV   +   RR  G 
Sbjct: 748 FTNQGAVSLNVRAIQTNSENVTLDFCVKDSGIGMSAAQLASLFQPFVQADNSITRRFGGT 807

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLGL+I  +   L  G + + S
Sbjct: 808 GLGLTISRNLARLMDGDIRVDS 829


>gi|255280824|ref|ZP_05345379.1| sensor histidine kinase KdpD [Bryantella formatexigens DSM 14469]
 gi|255268761|gb|EET61966.1| sensor histidine kinase KdpD [Bryantella formatexigens DSM 14469]
          Length = 895

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 553 RALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQY 609
           R   EK EA  + K ++++ + ++ +S++LR+PLT+I G  ++LL   +     +++  +
Sbjct: 649 RNAREKEEAAIIAKNEQLRANLLRTISHDLRTPLTSISGNASNLLSNYRKLDDGARERIF 708

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I   S  L+NLV ++L +  ++ G ++L+ S  ++++++ E  +  + K   + IR+
Sbjct: 709 TD-IYEDSMWLINLVENLLAVTRLEDGQVRLHQSVELMDEVVAEALRHTSRKSKSHTIRV 767

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +  L     D + ++Q+   +  NA+ ++ +GS + +   + +G  + SV +NG  
Sbjct: 768 SSAQELILAKI--DARLVVQVLINLTDNAIKYTQEGSCIEIHTEQKDGWVVVSVSDNGPG 825

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    VF+ F S A++    RR +GLGLS+  S +N HGG +++S +    T     
Sbjct: 826 IPDEQKMHVFDMFYSGANKLADSRRSLGLGLSLCRSIVNAHGGTITVSDNHPEGTVFTFT 885

Query: 788 IPSKE 792
           +P+ E
Sbjct: 886 LPAGE 890


>gi|167646752|ref|YP_001684415.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167349182|gb|ABZ71917.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 592

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 13/230 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K +F+  +S+E+R+PL  ++G   +++   L  L   Q + +E +  S   L  ++ND+L
Sbjct: 207 KTTFLATMSHEIRTPLNGVLGMLQVMQADGLSDL---QRERLEIVRKSGEGLTAILNDVL 263

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQR 686
           DL+ ++AG +++      L  LL     +++    E  +   + V S+ + G +  D  R
Sbjct: 264 DLSKIEAGRLEIQTVAFDLPGLLVGCHHAVSVLAAEKGLSCTLTVASEAR-GLYHGDPLR 322

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVS 744
           L Q+   +LSNA+ F++ G+  I  +AR NGD +  +V + G  + PED+ + +F +F  
Sbjct: 323 LRQVIGNLLSNAVKFTNSGT--IDLSARLNGDALEIAVSDTGVGVAPEDLGR-LFGKFSQ 379

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 RR  G GLGL+I      L GG +S++S+    +T   R+P+  
Sbjct: 380 LDASSTRRHGGTGLGLAICRDLCGLMGGGISVTSTVGQGSTFTVRLPAAR 429


>gi|239625972|ref|ZP_04669003.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239520202|gb|EEQ60068.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 363

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           VR   +     + L   + +++ F+ + S+E ++P+ ++ GF  LLK   L      + +
Sbjct: 111 VRLSESFNSMAQELENTELLRSDFINNFSHEFKTPIVSLRGFAKLLKNPDLS--QEDRDE 168

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHEN 665
           Y++ I   ST L  L +++L+L+ ++   M +  S +   DL  EV+QSI    +K  + 
Sbjct: 169 YLDIIIHESTRLSQLASNVLNLSKIEN--MSI-LSDMERFDLTEEVRQSILLLESKWQKK 225

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
              +++I D    S+   R  L Q++  ++ NA+ FS     + +K  + +G+ IF + +
Sbjct: 226 --ELELIIDMDEVSYHGSRNLLNQVWINLIDNAVKFSPDRGKIKIKLHQQDGNTIFQIID 283

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           NG  + +DM   +F+RF          G G+GL++V+  + LH GH+++ S +   TT  
Sbjct: 284 NGCGMSQDMRLHIFDRFYQGDPSHTTEGNGIGLTVVDKIVRLHKGHITVGSEEGIGTTFT 343

Query: 786 CRIP 789
             +P
Sbjct: 344 VTLP 347


>gi|16125173|ref|NP_419737.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221233906|ref|YP_002516342.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|13422191|gb|AAK22905.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220963078|gb|ACL94434.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 586

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 10/235 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E+ E   +A   K++F+   S+ELR+P+  ++G    L+ S   +L+  Q + +  
Sbjct: 193 RGLREEREKALEAARAKSTFIAVTSHELRTPMNGLLGMAHALQRS---TLDPVQREQIAL 249

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   L+ L+ND+LDL+ V+ G ++L    + L DL+ EV  +        N+ + V 
Sbjct: 250 MIKSGDSLMQLLNDVLDLSRVETGKVELAPIDMSLQDLVGEVVDAWRDAAVFKNLSLSVD 309

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD--FIFSVKNNG 727
               L   V AD  R+ Q+ + ++SNA+ F+  G   +  AAR  + GD     +V + G
Sbjct: 310 YAPDLPPGVHADPLRIRQVVTNLVSNAIKFTVDGGVRLEVAARPANGGDQRVSITVADTG 369

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
             +P D  + VF+ F        R   G GLGLSI  +     GG + +  S  G
Sbjct: 370 PGVPADAMERVFDSFTQADQTISREHGGAGLGLSIARALARQMGGDLVLVPSGRG 424


>gi|310826953|ref|YP_003959310.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612]
 gi|308738687|gb|ADO36347.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612]
          Length = 933

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 128/251 (50%), Gaps = 19/251 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYV 610
           + L    EA + A+E K+SF+  +S+++R+P+  IIG + +  +     +N+ Q     +
Sbjct: 535 KVLLAAYEAAKTANEAKSSFLAQMSHDIRTPMNAIIGMSSIAASQ----INNPQKVKDCL 590

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I+ SS  LL L+N+ILD++ ++ G + L      L++++ ++   + T+  E N  + 
Sbjct: 591 EKINLSSKHLLALINEILDMSKIEKGKIALAEEPFCLSEVIEDISAMVRTEAAEKNHELT 650

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSV 723
           V I D +    + D  R+ Q+   ++SNA+ ++  G  ++L            G F+F+V
Sbjct: 651 VIIKDIEHNILIGDAGRIRQVLLNLISNAIKYTLNGGEILLTVQEVSGKISGYGSFVFTV 710

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS---- 777
           ++NG  + ED    +F  F    +    + +G GLG+SI +  +    G++ + S     
Sbjct: 711 EDNGIGMDEDFLDYIFVPFSRAEDPQVQKIQGTGLGMSISQKIVAAMQGNIQVESEKGKG 770

Query: 778 DEGVTTINCRI 788
              V T+N +I
Sbjct: 771 SRFVVTLNLKI 781


>gi|300867481|ref|ZP_07112132.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334475|emb|CBN57300.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1174

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 130/244 (53%), Gaps = 22/244 (9%)

Query: 551 AERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           AER L E  +ALRKA       +  K+ F+  +S+ELR+PL  I+GF+ ++   +  SL 
Sbjct: 675 AERKLAE--QALRKAVIAADAANLAKSEFLSSMSHELRTPLNAILGFSQVM--VRDSSLK 730

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++  Q+++ I+ +   LL+L+NDIL+++ ++AG  +LN ++  L  LL  +++    K  
Sbjct: 731 NEHQQHLQIINRAGEHLLSLINDILEMSKIEAGKSQLNEASFNLIRLLGTLEEIFRLKAE 790

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---- 717
              +++      ++  FV  D  +L Q+   ++ NA+ F+  GS T+ +K   +N     
Sbjct: 791 SKKLQLIFDLSKEVPQFVKGDEGKLRQVLINLVGNAIKFTETGSVTLRVKLKSENEISSL 850

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I  +    +F  F      GQ+  +G GLGL I   F+ + GG +S
Sbjct: 851 ALPLQFEIEDTGPGIAAEEMNKLFAPF-EQTKTGQKSQQGTGLGLPISRKFVQMMGGDIS 909

Query: 774 ISSS 777
           ++S+
Sbjct: 910 VTST 913


>gi|253579599|ref|ZP_04856868.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849100|gb|EES77061.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 470

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 5/233 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L   ++ L K  E +  F+ +VS++ RSPLT+I G+ + +    +      Q +Y++ 
Sbjct: 231 KTLNYMSDELNKNGEYQRKFIANVSHDFRSPLTSIKGYVNAILDGTIPY--EMQERYLKI 288

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+  S  L  L   +L L  +D     ++     +ND +     +         IR++++
Sbjct: 289 IAFESERLEKLTRSLLTLNELDMKKRMMHIQRFDINDTIKNTAATFEGICTSRQIRLELL 348

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             G      AD +++ Q+   +L NA+ FS+  S+V ++    +G    SVK+ G+ IP+
Sbjct: 349 LSGHELYVRADMEQIQQVLYNLLDNAIKFSNDNSSVQIETTVKSGKVFVSVKDYGTGIPK 408

Query: 733 DMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +    +++RF   +A RG+ R+G GLGLSIV+  IN H  ++ + S+ EGV T
Sbjct: 409 ESLGKIWDRFYKIDASRGKDRKGTGLGLSIVKEIINAHNQNIDVIST-EGVGT 460


>gi|15644402|ref|NP_229454.1| sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|4982228|gb|AAD36721.1|AE001807_12 sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|1575578|gb|AAC44437.1| histidine protein kinase [Thermotoga maritima]
          Length = 412

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           RK DE++  F+  VS+ELR+PLT+I G+ + L    L +      ++++ I   S  +  
Sbjct: 180 RKLDEMRREFIATVSHELRTPLTSIHGYAETLLEDDLEN-KELVKRFLKIIEEESARMTR 238

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+LDL  ++          + L +++  V + I     EN + + V  +  +     
Sbjct: 239 LINDLLDLEKIEESEANFEMKDVDLCEVIEYVYRIIQPIAEENEVDLIVECEDVVVR--G 296

Query: 683 DRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKSV 738
           +++RL+Q+   ++ NA+ ++S   KG   +   A D  D+ +  V++ G  IP++    +
Sbjct: 297 NKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGIPKEAQSRI 356

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F +F  V  A   +  G GLGL+IV++ ++ HGG + + S     T +   +P +
Sbjct: 357 FEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTLMRVLLPKR 411


>gi|329955377|ref|ZP_08296285.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525780|gb|EGF52804.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 624

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 163/353 (46%), Gaps = 45/353 (12%)

Query: 443 LSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           LSE + V+    PD R  +      +L K  EN+ +    I      CS        W  
Sbjct: 306 LSEIIGVYNHIHPDDRHDMLRFLDNAL-KGTENKFNKEIRILRQDGNCS--------WTH 356

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              I+  +  E    Q  +EL+    + Y I  L + + ML                   
Sbjct: 357 VNLIVKVYAPE----QNCIELI---CINYDITRLKDTEAMLILAK--------------- 394

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   ++D +K++F+ ++S+E+R+PL  IIGF+ LL   +      ++ +Y+  I+ ++ +
Sbjct: 395 EKAEESDRLKSAFLANMSHEIRTPLNAIIGFSGLLPYIEDAE---ERDRYIALINHNNEL 451

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN++ND+LDL+ ++AG ++L+   + L+DL++E        + E  + +K         
Sbjct: 452 LLNIINDVLDLSKIEAGHIELSPVWLNLSDLIDESCTECQRNVPEG-VTLKTRYPAIPRL 510

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R+ Q+ S ++SNA+  +++G  V +       +   SV + G  IP++    +F
Sbjct: 511 IEQDPMRIKQVLSNLVSNALKNTTQG-YVEISYETGQSEARISVSDTGCGIPQEKLGVIF 569

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT---TINCRI 788
            RF       Q  G GLGLSI +S +    G +  IS+  EG T   T  C++
Sbjct: 570 ERFEKTDSFVQ--GAGLGLSICKSIVEHMNGRIEVISAVGEGSTFTVTFPCQV 620


>gi|326424323|ref|NP_762902.2| CheY-like receiver [Vibrio vulnificus CMCP6]
 gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 1328

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 12/244 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+  + E  L +  +        K  F+ ++S+E+R+P+  I+G   L   ++L  
Sbjct: 580 LLDLTERKQMESELRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL-- 637

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  Q +Y+  I+ S+  LL ++NDILD + ++AG + +      L+++   +   I+ K
Sbjct: 638 -DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFK 696

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDN 716
             E  I   +  D ++    V D  RL Q+   +  NA+ F+ KG  ++       + D+
Sbjct: 697 AQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSVMPESQSSDD 756

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
               FSVK+ G  I ++    +FN F S A     R   G GLGLSI +  + L GG +S
Sbjct: 757 VTLRFSVKDTGIGIDKEKIADLFNAF-SQADTSITREFGGTGLGLSISKQLVELMGGQLS 815

Query: 774 ISSS 777
           +SS+
Sbjct: 816 VSSA 819


>gi|288941101|ref|YP_003443341.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896473|gb|ADC62309.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 970

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 121/238 (50%), Gaps = 19/238 (7%)

Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER   L    E    A++ K+ F+  +S+E+R+P+  ++GF +LL   +L   +++   
Sbjct: 358 AERTAELMAAREQAEAANQAKSVFLATMSHEIRTPMNAVLGFCNLLYRRRL---DAESHD 414

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  S  +LLNL+ DILD + ++A  +++  S   L  +L ++   + T+     + 
Sbjct: 415 LVRKIQVSGALLLNLIEDILDFSRIEANRLEIAASPFDLRRVLEDLAAIMETEAGRKGLE 474

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAARDNGDFI 720
           +++    ++   + D +RL Q+  K+L+NA+ F+ +G   I        ++  R      
Sbjct: 475 LEIAPLPEVNDLIGDERRLKQVLLKLLANAVKFTEQGRVEIRVDLESEDMREVR----LR 530

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           FSV+++G  I      ++F+ F        RR  G GLGL+I +  ++  GG + ++S
Sbjct: 531 FSVRDSGIGIAPAQQAAIFSAFNQADGSISRRFGGTGLGLAISQQLVHAMGGRLQVTS 588


>gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
 gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
          Length = 916

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 125/228 (54%), Gaps = 14/228 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+   +++ +K  F+ ++S+E+R+PL  I+G+T LL+  KL   +++Q  Y+  I  S+ 
Sbjct: 279 NKETSESNRLKTQFLANMSHEVRTPLNAILGYTQLLQKDKL---DNQQRLYINTIEQSTN 335

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIR-IKVISDG 675
            LL ++ DILD + ++AG + L  S + + +L+++V Q ++  +  H+  +  I  +++ 
Sbjct: 336 NLLAIIGDILDFSKIEAGKLNLEQSEVNIRELIDDVYQILSANLLTHKKPVDLIPEVANE 395

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDNGD--FIFSVKNNGSSI 730
                + D  R+ QI + ++ NA+ F+  G   + V L+  R NG    +  V + G  I
Sbjct: 396 VPEWLIGDAIRIRQILTNLIGNAIKFTHDGFVRTKVTLEQQR-NGQPRLLVQVIDTGIGI 454

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           PE+   S+F  F  V+ +   Q  G GLGL I +  +   GG + ++S
Sbjct: 455 PENKLNSLFKAFSQVNTSTTRQFGGTGLGLVITKKLVEQMGGEIEVNS 502


>gi|124268043|ref|YP_001022047.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260818|gb|ABM95812.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 1001

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 123/242 (50%), Gaps = 22/242 (9%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K+ F+  +S+E+R+P+  ++G T+LL  +   +L+S+Q ++ + +  S   LL ++
Sbjct: 335 ASQAKSQFMATMSHEIRTPMNGVLGMTELLLGT---ALDSRQRRFAQAVYRSGESLLEII 391

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + ++AG ++L  +      L+ +V + +A +  E  + +    +  L   +  D
Sbjct: 392 NDILDFSKIEAGKLELAPADFTPRALVEDVLELLAPRAQERGLELSFREEPGLPPALHGD 451

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDFI---FSVKNNGSSIP 731
             RL Q+ + +++NA+ F+  G  V+          + A   GD +     V++ G  IP
Sbjct: 452 ALRLRQVLTNLVANAIKFTEHGEVVVEMRRVEPTAAETALATGDRLWVELCVRDTGIGIP 511

Query: 732 EDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC-R 787
            +    +F  F S A  G  R   G GLGL+I    + L  G +++ S   GV +  C R
Sbjct: 512 PEALSRLFIAF-SQASSGMARRYGGTGLGLAISRQLVELMSGSITVRSQ-PGVGSRFCVR 569

Query: 788 IP 789
           +P
Sbjct: 570 LP 571


>gi|332702934|ref|ZP_08423022.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553083|gb|EGJ50127.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 938

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  E   +A   K+ F+ H+S+E+R+PL  ++G T+L +++   +L  +   ++ 
Sbjct: 543 EHELRQAKEIAEEASRAKSEFLAHMSHEIRTPLNGMLGMTELAESA---TLEERTRHFLH 599

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S   LL L+NDILDL+ ++AG +++      L   +  + +S++    +  + ++ 
Sbjct: 600 LARESGNHLLGLINDILDLSRIEAGELRIERYGFDLRVEVRLLAESMSVLAEQKGLLLEC 659

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGD--FIFSV 723
             D  + +  + D  RL QI   ++ NA+ F+ +G  ++L       A   GD   +FSV
Sbjct: 660 RLDELIPNDLLGDAGRLRQILVNLVGNALKFTRQGGVLLLVEMEETRAVGQGDIRLLFSV 719

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I +   +++F  F    +  ++ G GLGLSI    + + GG + + S     +T
Sbjct: 720 SDTGIGIDKATFRTIFENFTRLDNSAEQVGTGLGLSICRRLVEMMGGRIWLESEVGVGST 779

Query: 784 INCRIP 789
            +  +P
Sbjct: 780 FHVSLP 785


>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 950

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 186/436 (42%), Gaps = 66/436 (15%)

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           +S+   DT H    +  H+ ++  P   T+    +++ +V+LE   + L +V  E+   +
Sbjct: 103 ASDDESDTGHSTVIEWQHLRISGIPSVATLMTLRDVSREVELEKDRDRLAEVAEESPYPI 162

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL---- 499
            E        G +  +NPA                    +A    R+     G+DL    
Sbjct: 163 VE----IDRHGNLVYANPA--------------------MADVLGRF-----GYDLAGKP 193

Query: 500 ------FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRAE 552
                   A++ +   E ++L     +  ++   +++ P+P    +  F +++++     
Sbjct: 194 EILPDNLPALVATCLLEGRTLTSQDVVRGEACYSWTLCPVPGHGLVRAFAIDLSEVHATH 253

Query: 553 RALTEKNEALRKADEI--------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           RAL E  + LR+++                K+SF+  +++ELR+P+  +IG   LL  + 
Sbjct: 254 RALNETADRLRESNRQLDQALQQAQTAARAKSSFLAMITHELRTPMNGVIGMASLLLETP 313

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q  +   I       L+L+ND+L+ + ++AG ++L +    L   + +V    
Sbjct: 314 ---LTEEQRSFTNTIQQCGEAQLSLINDVLECSKIEAGKLELEHLDFYLRTTVEDVLSQF 370

Query: 659 ATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARD 715
           A +     + I  ++      +   D  RL Q+ +  + NA+ F+ +G  V L+A   RD
Sbjct: 371 AERAQRKGLEITGLVHAAVPNALRGDPGRLRQVLTNFVGNAIKFTERGE-VTLQAFLERD 429

Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           +   +   F V ++G  I ED+   +F  F        R+  G GLGL+I +  + L GG
Sbjct: 430 SPSEVIIKFEVTDSGIGISEDVQSRLFQAFTQADSSTTRKYGGTGLGLAISKQLVELMGG 489

Query: 771 HVSISSSDEGVTTINC 786
            V + S     TT  C
Sbjct: 490 QVGLRSQPGQGTTFWC 505


>gi|294634067|ref|ZP_06712622.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292829881|gb|EFF88235.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 1168

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 876  QARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEY 935

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M +    + L+ L+  V+ +      +  +  
Sbjct: 936  AGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPERVPLSRLIEYVEATFRPMTTQKGLEF 995

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----------VILKAARDNG 717
             V  + G       D  RL QI   +LSNA+ F+ +G             V     R   
Sbjct: 996  AVETATGAPADLFTDDSRLRQILRNLLSNAVKFTEQGRVELSIEPAADEEVPAGVVRGGA 1055

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F VK+ G  IP+   +S+F  F        R+  G GLGLSI     +L GG V + 
Sbjct: 1056 VVAFRVKDTGIGIPQQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVVVD 1115

Query: 776  SSDEGVTTINCRIP 789
            S+    +T    +P
Sbjct: 1116 SAPGRGSTFTLFLP 1129


>gi|269103004|ref|ZP_06155701.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162902|gb|EEZ41398.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 615

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 6/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E      +A+ IK  F+  +S+E+R+P+  I+G  ++L       L+ K  ++ E
Sbjct: 225 ELLLQEAQHESEEANRIKTEFIATMSHEIRTPMNVILGSLEVLNEE---DLSPKSKRFAE 281

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              +++ +LLN +ND+LD A +++G + L+        L+  ++     +  +  ++  V
Sbjct: 282 ISQSAAHLLLNQLNDVLDFARLESGKVALSQGEFSPYKLVRSIEDIFRNQAEQKGVKFHV 341

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I        V+D  ++ QI + I+ NA+ F+S GS  I     +    IF++ + G  I
Sbjct: 342 DIGFSPELFMVSDEGKISQILTNIVGNALKFTSSGSITIRARWHETEQLIFTISDTGIGI 401

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +D   S+   FV +     RR  G G+GL+I  + + L  G + I S     T    R+
Sbjct: 402 DKDKIASILQPFVQSDASFSRRYGGAGMGLAITSALVELLCGQLEIDSQVAKGTQFTVRL 461

Query: 789 P 789
           P
Sbjct: 462 P 462


>gi|160901448|ref|YP_001567030.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160367032|gb|ABX38645.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1044

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +++F+ ++S+E+R+P+  IIGFT+ L+ +   +L   Q++Y++ +  ++  +L L+NDIL
Sbjct: 655 RSTFLANMSHEIRTPMNAIIGFTEALRET---ALQPTQARYLDTVHYAARSMLRLLNDIL 711

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           D A +D G ++L      + +L  ++  S+        + +++  D     +   D  R+
Sbjct: 712 DTAKLDKGAVELEIEDFSVRELCQQILASLRITADRKGLDLRLDYDPHTPAALRGDGMRV 771

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +L NA+ F+ +G  V+L+   + G     V + G  I  +    +F+ F     
Sbjct: 772 QQILVNLLGNAVKFTERGH-VLLRVRYEQGVLQLDVHDTGIGIAPEKIHRIFDPFAQADA 830

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              RR  G GLG +I      L GG + + S+    T    R+P
Sbjct: 831 STTRRFGGTGLGTTISRQLAELMGGSIQLHSTVGVGTVFEVRLP 874


>gi|32476376|ref|NP_869370.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32446921|emb|CAD78827.1| sensory transduction histidine kinase-possibly sensor/response
           regulator hybrid [Rhodopirellula baltica SH 1]
          Length = 860

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 19/237 (8%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IKN F+ ++S+E+R+P+  I+G  +L+  S   SL+ +Q  Y+  I  S+  LL ++NDI
Sbjct: 320 IKNQFLANMSHEIRTPMHGILGTAELMTRS---SLDEQQRHYMYMIQTSAKGLLTVLNDI 376

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADRQR 686
           LD + VD+G M L      L DLL++   ++   K  E +++ +    G     V D  R
Sbjct: 377 LDFSKVDSGQMTLESVPFELKDLLSQTMHAVVNLKNEEVDLQFQP-PVGVPEIIVGDPTR 435

Query: 687 LLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFI-FSVKNNGSSIPEDM 734
           L Q+   ++ NA+ F+ +G   +           L  +   G  I F++ + G  + +  
Sbjct: 436 LRQVLINLVGNALKFTEQGRVTVTVENETRDATTLDTSDSKGSRIAFTITDTGIGMTQQQ 495

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F        RR  G GLGLSI    + L GG + +SS     ++    IP
Sbjct: 496 QAKIFEAFTQGDSSTTRRFGGTGLGLSISSQLVELMGGRLQVSSVPNEGSSFRFDIP 552


>gi|255548630|ref|XP_002515371.1| sensor histidine kinase, putative [Ricinus communis]
 gi|223545315|gb|EEF46820.1| sensor histidine kinase, putative [Ricinus communis]
          Length = 930

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 52/287 (18%)

Query: 543 VNVTDSVRAERALTEKNE--ALRKADEIKNSFVQHV--------------SYELRSPLTN 586
           ++VTD VR    + +  E  A++KA E + +   H+              S+E+RSPL+ 
Sbjct: 327 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSG 386

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++   ++L T+   +L+ +Q Q +  + +S  ++L L+NDILDL+ V++G+MKL  +   
Sbjct: 387 VVSMAEILSTT---NLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFR 443

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +++  V Q+ A  + +  I    ++D      + D  R+ QI + ++SNA+ F+ +G 
Sbjct: 444 PREVVKHVLQTAAASLKKFLILEGCVADDVPIEVIGDVLRIRQILTNLISNAIKFTHEGK 503

Query: 707 TVI----------------------LKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNR 741
             I                       + A+     ++    V + G  IPE+   ++F +
Sbjct: 504 VGINLYVVADPCFGKADGNHQKSSAKEEAQSQETLVWLRCDVYDTGIGIPENALPTLFKK 563

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           +  VS  H  +  G GLGL+I +  + L GG +++SS       +NC
Sbjct: 564 YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSR------VNC 604


>gi|171061038|ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778483|gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 589

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 17/232 (7%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE-- 611
           AL       + A+  K  F+  +S+ELR+PLT+I GF +L++         +Q ++ +  
Sbjct: 350 ALIASEARAQSANHAKTEFLAAISHELRTPLTSIRGFAELMEK------RIEQPKFKDQA 403

Query: 612 -YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  ++  L  L+  ILD A ++AG M++  + + +  L+       A    E  + ++
Sbjct: 404 GMIRRAAEHLNALLTQILDFAKIEAGAMRVGATPVAIRPLVRGTADFFAVSAAEKGLELR 463

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V I+D    + + D  RL Q+ + +LSNAM F++ G  V ++  RD       V + G  
Sbjct: 464 VQIADDVPETLLTDELRLKQVLNNLLSNAMKFTA-GGHVAIEVERDATQLRLHVVDTGPG 522

Query: 730 IPEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           IP +  + +F RF       AH  Q  G GLGL++  S   L GG + ++S+
Sbjct: 523 IPAEQHELIFERFRQADSQVAH--QHGGTGLGLALSRSLAELMGGTLGVTST 572


>gi|170727177|ref|YP_001761203.1| histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812524|gb|ACA87108.1| histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 576

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 125/244 (51%), Gaps = 8/244 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  ++ L +K  A +     K+ FV  +++ELR+PL  ++G T+L+  ++L      Q +
Sbjct: 197 VLLDKTLAQKTRAEQSERSTKD-FVAMINHELRTPLNGLLGNTELMIETRLSDY---QEK 252

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ +  S  +L  ++ND+LD++ ++AG+++LN       +L N ++ + A +  E  + 
Sbjct: 253 LIKNMVQSGELLKVIINDLLDISKINAGMLELNEVAFSTLELTNAIQNTFAPQAAEKGLA 312

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
                D K   +   D  R+ QIF  ++ NA+ F+ KG  + +K       F F + + G
Sbjct: 313 FDFEIDPKTPENLSGDPDRIKQIFVNLIGNAIKFTDKGK-ISIKIDWHESSFRFVISDTG 371

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP++   ++F+ F    +R  R   G GLGL+I +  +N   G +++ S  +  ++  
Sbjct: 372 CGIPKEHLANLFDPFTQVNNRSNRLYEGTGLGLTICKLLVNEMLGQIALESQPDKGSSFT 431

Query: 786 CRIP 789
             +P
Sbjct: 432 VTLP 435


>gi|269960268|ref|ZP_06174643.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi
           1DA3]
 gi|269835075|gb|EEZ89159.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi
           1DA3]
          Length = 786

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+   L  +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTDEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    D    I  V++
Sbjct: 381 DLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEEDYATIIMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IP++    +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 500 STFTVSIHVP 509


>gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 144/290 (49%), Gaps = 43/290 (14%)

Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKAD---EIKNSFV 573
           ++ S+ P+  PN        N+   V  ER +T+K E       A  KAD   + K++F+
Sbjct: 363 IDVSVTPIFKPNG-------NIMHYVVVERDITKKKELENKLIKAADKADVSNKAKSTFL 415

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PL  I+G   +++++     + +Q + ++ +  S   LL+L+NDILD + +
Sbjct: 416 ATMSHELRTPLNGILGMAQIIESN---IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKI 472

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMH--------ENNIRIKVISDGKLGSFVADRQ 685
           +   ++LN+++   ND+++ +  +  +           +NNI  K I       F+ D+ 
Sbjct: 473 EQNKLELNHASFYFNDVIDPIANTYLSICEDKGLQFIIDNNINEKTI-------FIGDKP 525

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           R+ QI   ++SNA+ F+ KGS  +       A+        V++ G  I +   K +F  
Sbjct: 526 RIRQIIFNLISNAVKFTHKGSITLNFSHTLTAKGEQAIQIKVQDTGIGIRKKRLKHIFEP 585

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+       R+  G GLGL+IV+   +   G++S++SS+   T     +P
Sbjct: 586 FIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635


>gi|187923308|ref|YP_001894950.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia phytofirmans PsJN]
 gi|187714502|gb|ACD15726.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia phytofirmans PsJN]
          Length = 944

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 112/214 (52%), Gaps = 9/214 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT I+GF+ +L  +     N    + VE I   +  +  +
Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQAPDAQPNG---ELVEAIHEEALRMTGI 732

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + AG ++LN    +L + +    ++    +  + +R+K+ +D  L     D
Sbjct: 733 VTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLTNHPVRVKLPADLPLLHL--D 790

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FI-FSVKNNGSSIPEDMCKSVF 739
              + ++FS +  NA  +++  + + + A R + D   F+  +V ++G  +P  M   VF
Sbjct: 791 AVLMERLFSNLFENAAKYTAPATPLTIGAQRLDADGKSFVRVTVDDSGPGLPAGMEARVF 850

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +F        + G+GLGL+I  + +  HGG + 
Sbjct: 851 EKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIG 884


>gi|150390625|ref|YP_001320674.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950487|gb|ABR49015.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 588

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 3/225 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E    +RK +++++ FV +VS+EL++PLT+I GF + LK+  +    +K  ++++ I
Sbjct: 348 ALMEDVSEIRKLEKMRSEFVANVSHELKTPLTSISGFIETLKSGAIEDEETKM-RFLDII 406

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L  L+NDIL L+ ++     L    I  N+ L +V + +       +IR+    
Sbjct: 407 DIETERLARLINDILTLSEIENNHSHLAGQGIKTNEALKDVIEMMTPIAQNKSIRLGSQV 466

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +  L   + ++    Q+F  ++ NA+ ++S+G  V + A +     +FSVK+ G  IP+ 
Sbjct: 467 ELNLPILIGNQDWFKQMFINLIDNALKYTSEGGRVQISAYKKYNHVVFSVKDCGVGIPKK 526

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF  V  A   +  G GLGL+IV+  +    G + ++S
Sbjct: 527 DIPRLFERFYRVDKARTRKVGGTGLGLAIVKHIVLSLNGRIKVNS 571


>gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 523

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 9/222 (4%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTI 619
           A +  +E +N+F+  +S+ELR+P++ I GF + +     G    +Q  + ++ IS  +  
Sbjct: 285 AQKMEEERQNTFISVISHELRTPVSIIKGFAETMLRPD-GQFTVEQYREALQVISEEADR 343

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLG 678
           L   + D+LD++ + AG ++L  S + L+ L+++V +  A ++ E     I+V  D  L 
Sbjct: 344 LARQIQDLLDVSRIAAGGLRLERSDVALHLLVSDVVRRFAAQVGERIEFEIRVPDD--LP 401

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKS 737
              AD +R+ Q+ + ++ NA+ +S  G  VI   AR  GD  I  V + G  IP +    
Sbjct: 402 PVYADYERMRQVLTNLIENAVKYSPNGG-VIRIGARAEGDMAIVYVSDQGIGIPPEEQDL 460

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F RF  V    R  + G GLGL I  + +  HGG + + S 
Sbjct: 461 IFERFYRVDTRLRRDQPGSGLGLFITRAIVEAHGGRIWVESQ 502


>gi|325917266|ref|ZP_08179488.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536520|gb|EGD08294.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 459

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 12/222 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISAS 616
           K E   +A   K  F+  + +E+R+P+T ++G ++LL KTS+    ++ Q  Y E I  +
Sbjct: 243 KQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSQ----DATQRSYTESIRRA 298

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G 
Sbjct: 299 GAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGL 357

Query: 677 LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733
           LG   A  D  R+ QI   +LSNA+ F+ +G   + L          F V + G  I  D
Sbjct: 358 LGDITASGDPTRIRQILLNLLSNAIKFTERGVVGLKLTTLGTYQGLRFEVADTGPGINAD 417

Query: 734 MCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
               +F RF   +  +   R  G GLGL+I +      GGH+
Sbjct: 418 QKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELALAMGGHI 459


>gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
 gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
          Length = 807

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 9/229 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +       A+  K+ F+ ++S+E+R+P+ +I+G + LL TS   +L+  Q  ++  I
Sbjct: 457 ALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTS---NLSDDQRNHLITI 513

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+L+NDILD++ +DAG + +      L  L+ +V      K  ++ +++ +  
Sbjct: 514 DKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDL 573

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSS 729
           D  L   + D  R+ QI    +SNA+ F+ +G   I        + +F    SV++NG  
Sbjct: 574 DKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIG 633

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +  D    VF  F        R+  G GLGL+I +   +L GG V + S
Sbjct: 634 LSTDDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVES 682


>gi|188581323|ref|YP_001924768.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
 gi|179344821|gb|ACB80233.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
          Length = 613

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 143/292 (48%), Gaps = 16/292 (5%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSF 572
           L G L +  D+V+ Y  +   N       V  T + +RA R L  +   LR+A+ +K   
Sbjct: 319 LAGRLSVAFDNVILYERLQRANVTLEQRVVERTAELIRANRRLDMQRSDLRRANSLKTEI 378

Query: 573 VQHVSYELRSPLTNIIGFTDLL-------KTSKLGSLNSKQSQ--YVEYISASSTILLNL 623
           +  ++++L++PL+ I+G +++L       + +  GS +++ +    V++I  S+T L+++
Sbjct: 379 LGTIAHDLKNPLSVILGRSEMLTDLIGLDQGAAPGSDDARAAMRTQVDHIRTSATRLIDM 438

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++ ++  A  DA  + L    + L  L  EV ++          R+     G L     D
Sbjct: 439 IDSLMADAMNDALDITLRREPVDLAGLAREVCEANRPLAESKGQRLITDLAGPL-QLCGD 497

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF 742
            +RL +    ++SNA+ +S  G T+ ++   + GD++ +V + G  + PED  + +F R+
Sbjct: 498 AERLREALDNLVSNAIKYSYPGGTITVRVRAEAGDYVCAVADQGPGLSPEDAGR-LFGRY 556

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPSK 791
             +S    G     GLGLSIV+    LHGG    SS   G   + + R P +
Sbjct: 557 QRLSAKPTGGEGSTGLGLSIVKRIAELHGGRAEASSDGPGQGAVFSMRFPKE 608


>gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 645

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P++ ++G T+LL  ++L     +Q +Y+  I AS+  LL+++NDIL
Sbjct: 264 KSQFLSNMSHEIRTPMSGVLGMTELLGFTEL---TPEQHEYLNDIKASADNLLSIINDIL 320

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           DL+ ++AG ++L  +   L   +         ++ E +++I+     ++   V  D+ R+
Sbjct: 321 DLSKIEAGKIELEAANFSLQQCIRTTTAMQMPRILEKHLQIETKISPEIPEVVNGDQLRV 380

Query: 688 LQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            QI   +LSNA+ F++ G   I   L  +R+    +  SV + G  I  +    +F+ F 
Sbjct: 381 KQILLNLLSNAVKFTAHGQISIQASLLESRNEHLLVQISVSDTGVGIAAEALDRIFDPFT 440

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  R+  G GLGL+I      L GG + + S +   +  + R+P K
Sbjct: 441 QADASTSRKFGGTGLGLAICRQLAELMGGGIRVESEEGKGSRFHLRLPFK 490


>gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1788

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L    E+   A+  K+SF+ ++S+E+R+P+  I+G   L +     ++  K   Y+ +I 
Sbjct: 924  LAHAKESADLANRAKSSFLANMSHEIRTPINAIVGMCHLAQRM---TVEPKLRDYLGHIQ 980

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  LL ++NDILD++ ++AG +        L++L++ V +    K  + N+ + +  +
Sbjct: 981  VAADTLLGIINDILDVSKIEAGKLHFEDIPFKLDELISRVMRLQGLKAQDKNVELVIDLE 1040

Query: 675  GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSS 729
             ++  + V D  R+ QI + +++NA+ F+ +G  V+   L+   D      F V+++G  
Sbjct: 1041 PQVPQTVVGDPLRISQILTNLVNNAVKFTEQGEVVLSVKLQGVFDGRVTLYFEVRDSGIG 1100

Query: 730  IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + +   + +F  F        RR  G GLGLSI ++ + + GGH+ + S
Sbjct: 1101 MEDAQLQRLFTPFQQGDDSMTRRYGGTGLGLSICQNLVKMMGGHLQVES 1149


>gi|167994521|ref|ZP_02575612.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327619|gb|EDZ14383.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248493|emb|CBG26330.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995527|gb|ACY90412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301159877|emb|CBW19396.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131688|gb|ADX19118.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990186|gb|AEF09169.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 778

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|197265807|ref|ZP_03165881.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197244062|gb|EDY26682.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 778

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|161616338|ref|YP_001590303.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168243164|ref|ZP_02668096.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262659|ref|ZP_02684632.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|194451313|ref|YP_002047357.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|200387522|ref|ZP_03214134.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|161365702|gb|ABX69470.1| hypothetical protein SPAB_04147 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409617|gb|ACF69836.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|199604620|gb|EDZ03165.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205337795|gb|EDZ24559.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348428|gb|EDZ35059.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 778

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|58293963|gb|AAW69924.1| ethylene receptor [Malus x domestica]
          Length = 741

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 139/265 (52%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+ +T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIATFNLHSIFREVHNLIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
               + + ++ + + +D  + + + D +RL+QI   ++ NA+ FS +GS  I       +
Sbjct: 432 PVASVKKLSVALNIATDLPVYA-IGDEKRLMQIILNVVGNAVKFSKEGSISITAYVAKSE 490

Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + RD    DF              VK++G  I P+D+  ++F +F        +   G G
Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGLGINPQDI-PNLFTKFAQTQTSASQNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
           LGL+I + F+NL  GH+ I S   G
Sbjct: 550 LGLAICKRFVNLMEGHIWIESEGLG 574


>gi|30020625|ref|NP_832256.1| sensor protein vanS [Bacillus cereus ATCC 14579]
 gi|29896177|gb|AAP09457.1| Sensor protein vanS [Bacillus cereus ATCC 14579]
 gi|326940267|gb|AEA16163.1| sensor protein vanS [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 385

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     +    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384


>gi|317130193|ref|YP_004096475.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475141|gb|ADU31744.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 468

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 4/228 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L   D+++  FV +VS++LRSPLT+I GF   L    +     + S+Y   +   +  
Sbjct: 235 EELGSIDQMRKDFVANVSHDLRSPLTSIRGFLGALIDGTIPK--EEHSKYFSIMKNETER 292

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+NLV D+L +A ++A  + +  +T  L + L  +   +   + +  + +++  +  +  
Sbjct: 293 LMNLVEDLLHMARLEANQIDIKPNTYNLTEQLRLIIAKMEPSLSKRRVELELHCEEDVFV 352

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           + AD  R+ Q+F  +L NA+ FS + S + +   +++     S+ + G  I E+  K ++
Sbjct: 353 Y-ADENRMDQVFINLLQNALQFSHEDSKIEVNIEKESDVAKVSITDYGPGINEEDLKYIW 411

Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            RF   +  R ++ G G+GLSIV+  I+LHG  + + S  +  TT  C
Sbjct: 412 ERFYKKDKARSKKTGAGIGLSIVKHIIDLHGTTIDVKSDVKEGTTFIC 459


>gi|308070734|ref|YP_003872339.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305860013|gb|ADM71801.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 556

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 11/219 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  +IG  DLL  ++L    S Q +Y + I  S+  L+ ++NDILD  
Sbjct: 172 FLAMMSHEIRTPMNGVIGMIDLLMETEL---QSDQQEYADIIRRSADALVAVINDILDFT 228

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +++G M++      L   + EV      +++  N+ +    D ++   +  D  RL Q+
Sbjct: 229 KLESGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQMPPVLYGDMGRLRQV 288

Query: 691 FSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
              ++SNA+ F+ +G   +  + +   DNG  + FSVK+ G  I     + +F  F    
Sbjct: 289 LINLVSNAVKFTDQGGVYVFASVKEQSDNGLTVEFSVKDTGIGIDSAKVERLFQPFSQLD 348

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSIS-SSDEGVT 782
               R+  G GLGL+I ++ +N+ GG + +  S ++GVT
Sbjct: 349 SSMTRKYGGTGLGLAICKTLVNMMGGDIRVDMSGEQGVT 387


>gi|261250888|ref|ZP_05943462.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891]
 gi|260937761|gb|EEX93749.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891]
          Length = 1053

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 15/232 (6%)

Query: 557 EKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEY 612
           E N+A  KA+E   +K+ F+ ++S+E+R+P+  IIG + L LKT     L  KQ  Y+  
Sbjct: 286 ELNKARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTD----LTPKQHDYILK 341

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+++LL ++NDILD + ++AG + + +    L+D+L+ V      K  E  + +   
Sbjct: 342 IHNSASLLLGIINDILDFSKIEAGKLSIEHIEFHLDDVLHNVSMVTGQKAFEKGLELIFQ 401

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727
            D  +   +  D  RL QI   +++NA+ F+ +G   +       + +  +  F+V++ G
Sbjct: 402 IDRNVPKVLFGDPLRLGQIIINLVNNAVKFTDQGEITVHVTKKPYSEEKIELNFTVQDTG 461

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +  +  + +F+ F        RR  G GLGLSI    + L GG + + S+
Sbjct: 462 IGMSPEQSEKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGDIHVESA 513


>gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
 gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
          Length = 891

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 257 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPPQTDYLQTIQRSANNLL 312

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + ++       
Sbjct: 313 CIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHVNQDVPEQV 372

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+  IL A +    +    +  + + G  I E    
Sbjct: 373 IGDAMRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTAEQVTLVVEIHDTGIGISESQQT 432

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +   GG +S  S
Sbjct: 433 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYS 474


>gi|307154954|ref|YP_003890338.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985182|gb|ADN17063.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 373

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 9/238 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERA+    +  ++  E+K+ F   V++E R+P+T I+G   LL+         ++ +Y+
Sbjct: 125 AERAIRVALQKEKELSELKSRFWSMVAHEFRTPMTTILGSAQLLEELHHQISEERRREYL 184

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHENN 666
             I  S   +  L+ND+L +  V+ G +K   + + L     DL++E++ +        N
Sbjct: 185 FLIQQSVRSMEQLLNDVLSIGRVEGGSLKFQPAILNLEQFCRDLIDEMQFNAGP-----N 239

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            +I     G       D++ L  I   +L+NA+ +S +G  + L    D+ +    V++N
Sbjct: 240 YQIIFQQHGDCEHTYLDKKLLRHILVNLLTNAIKYSPEGGHIYLNIFCDHTEIKLQVQDN 299

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE+    +F  F    + G   G GLGL++V+  ++LHGG + ++S     TTI
Sbjct: 300 GIGIPEENQHHLFEPFQRAGNVGSIPGTGLGLTMVKKCLDLHGGEIVVNSQVGVGTTI 357


>gi|168463446|ref|ZP_02697363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195633140|gb|EDX51554.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 778

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|218781238|ref|YP_002432556.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218762622|gb|ACL05088.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 622

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 9/245 (3%)

Query: 552 ERALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER  T +  A   L+++++    F    S++L+ PL  +  +T LL     G L+ K  +
Sbjct: 372 EREATRRRAAMADLKRSNKELEQFAYVASHDLQEPLRMVASYTQLLAQRYEGQLDEKAQK 431

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+ Y    +T + +LVND+L L+ V  G     +     N+++ +V + +   + E    
Sbjct: 432 YISYAVEGATRMQHLVNDLLQLSRV--GTRGAPFEPTDCNEVVQQVLKGLKRTIAETKAG 489

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNG 727
           + VI D  L    AD  +L Q+F  +L NA+ F  +    V + A + N  ++F V++NG
Sbjct: 490 V-VIDD--LPVVQADAIQLGQVFQNLLGNAVKFRGEAPPQVRITAEKQNEAWVFQVRDNG 546

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I     + +F  F     RG+  G G+GL+I +  +  HGG + I S +    +    
Sbjct: 547 IGIDPKFHERIFTIFQRLHERGKYNGTGIGLAIAKKIVERHGGRIWIESQEGKGASFFFS 606

Query: 788 IPSKE 792
           IP ++
Sbjct: 607 IPERD 611


>gi|84623384|ref|YP_450756.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
 gi|84367324|dbj|BAE68482.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
          Length = 1216

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+  Q  Y E I  + 
Sbjct: 835  KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYTESIRRAG 891

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G L
Sbjct: 892  AHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGLL 950

Query: 678  GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
            G   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  + 
Sbjct: 951  GDITASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 1010

Query: 735  CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F RF   +  R   R  G GLGL+I +      GGH+ + S
Sbjct: 1011 KARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVIS 1055


>gi|37680448|ref|NP_935057.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37199196|dbj|BAC95028.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 805

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 114/215 (53%), Gaps = 11/215 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     LN +Q ++++ +  S   ++ L+N+I
Sbjct: 353 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNEEQRKHLKTLYDSGDHMMTLLNEI 408

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G M+ + +    + ++  V     T   E  ++ KV S    G  + AD+ R
Sbjct: 409 LDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVYSTVPTGRWYCADKAR 468

Query: 687 LLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
           L Q+   +L+NA+ F+++G   +   +  R+  +++   VK+ G  IPE   K +F  F 
Sbjct: 469 LRQVLFNLLNNAVKFTARGLVEVYFEEHTREQANYLSIKVKDTGIGIPESAQKRIFRPFE 528

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  RR  G GLGL+IV+      GG V++SS
Sbjct: 529 QAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSS 563


>gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
 gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
          Length = 1297

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 11/248 (4%)

Query: 541  TFVNVTDSVR--AER-ALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            T +N+T+  R  AER  L  + +A R    +A+ IK+ F+  +S+ELRSPL  I+G+  L
Sbjct: 893  TVLNITEQKRIEAEREQLLVREQAARAEADRANRIKDEFLAVLSHELRSPLNPILGWIRL 952

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+  KL     +Q++ ++ I  ++ +   L+ D+LD++ +  G + L  + I L  +++ 
Sbjct: 953  LQNGKLDL--PRQTEALKTIERNAKLQSQLIEDLLDISRIMQGKLTLTAAPISLTFVISA 1010

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +++       NI+I +     +     D  RL Q+   +L+NA+ F+ +G  VI++  
Sbjct: 1011 AIETVRLAAEAKNIQILLDLSTTVSYVSGDANRLQQVVWNLLTNAVKFTPRGGQVIVELK 1070

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            + +      V + G  I       VF  F        R+  G+GLGL+IV   + +HGG 
Sbjct: 1071 QLDQLAQIRVSDTGKGIDPQFLPYVFEYFRQADSTTTRKFGGLGLGLAIVRQIVEMHGGT 1130

Query: 772  VSISSSDE 779
            V   S  E
Sbjct: 1131 VKAESLGE 1138


>gi|307296809|ref|ZP_07576627.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877722|gb|EFN08948.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 766

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 38/352 (10%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           T +  + G+A   P GR  L N  F  +   E   L  G   R I        +      
Sbjct: 175 TFEQAAVGLAHCSPQGRFLLVNDRFCEIAGYEREELI-GLDYRQITHPADYEIDARLAGR 233

Query: 499 LFAAIITSFDDERKSLQG---------TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           L    I  F  E++ ++          T+ L+ D+  E              FV V + +
Sbjct: 234 LLLGEINDFAYEKRYVRKDGGLVWINLTVSLVRDASGEPDF-----------FVCVVEDI 282

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQ 608
            A R+    + A       K  F+ ++S+E+R+P+  I+GF DLL    LG+ L   Q +
Sbjct: 283 GARRSAEMASAA-------KTGFLANMSHEIRTPMNGILGFADLL----LGAGLPPDQHR 331

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V+ I+ S   ++ L+NDILDL+ V+AG M++      L   L+     +     +  I 
Sbjct: 332 QVKMIADSGRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVRVGAEQKGID 391

Query: 669 -IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNN 726
            I+ I+D    +   D  RL Q+   +L NA+ F+S+G  V L+   D  D  +  V+++
Sbjct: 392 LIRDIADDLPRTVTGDGLRLRQVVLNLLGNAVKFTSEGH-VALRVHLDGADRLVIVVEDS 450

Query: 727 GSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
           G  I  +   ++F +FV ++A    R  G GLGLSI    + L  G +++ S
Sbjct: 451 GPGIAPERQAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTLDS 502


>gi|258511936|ref|YP_003185370.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478662|gb|ACV58981.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 463

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 9/241 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A RAL      +R++ E +  FV H S+ELR+PL  +    D +     G      S+ +
Sbjct: 205 ASRAL----RPIRRSFEEQRRFVAHASHELRTPLAVMRLQIDRMFRHP-GETILDMSEVI 259

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             ++  ++ L  LVND+L LA  D G   L    + L  +  E     A    E  ++++
Sbjct: 260 ASLARETSRLQRLVNDLLTLAKADEGEAVLRLRPVDLATIAREAALRFAPLAEEKGVQLR 319

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V         VAD  RLL++ S ++ NA+ F+  G  V + A       + +V++ G  I
Sbjct: 320 V--SAAETPIVADPDRLLELLSILVDNAIAFTPAGGWVEIDAHASGSAAVLAVRDTGRGI 377

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGV-TTINCRI 788
           P +    VF+RF         RG GLGLSI +     HGG + I S    G  T +  R+
Sbjct: 378 PPEHLPRVFDRFYQADPSRTTRGAGLGLSIAKWIAEAHGGQIRIFSPGSHGTGTEVEVRL 437

Query: 789 P 789
           P
Sbjct: 438 P 438


>gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 582

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 16/241 (6%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASST 618
           A+R+ + I++ FV +VS+EL++P+  + GF + L     G+L  K+    +++ I   S 
Sbjct: 343 AVRRLERIRSEFVANVSHELKTPVAAVKGFAETLMA---GALEDKEMARSFLQIIYDESD 399

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ DIL+L+ +++  + L +S + +  ++    Q +  +  + +I ++   + +L 
Sbjct: 400 RLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENEL- 458

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGD---FIFSVKNNGSSI 730
              AD  RL QI   +LSN + ++ +G  V      + +  DN D       + + G  I
Sbjct: 459 YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGIGI 518

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     +F RF  V  A      G GLGLSIV+    LH G +S+ S     TT N  +
Sbjct: 519 PEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNIEL 578

Query: 789 P 789
           P
Sbjct: 579 P 579


>gi|90418499|ref|ZP_01226411.1| putative two-component signal transduction histidine kinase
            [Aurantimonas manganoxydans SI85-9A1]
 gi|90338171|gb|EAS51822.1| putative two-component signal transduction histidine kinase
            [Aurantimonas manganoxydans SI85-9A1]
          Length = 1302

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 5/217 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            ++ D +KN FV  VS+ELR+PLT+I G   L++      +    ++ +    A+   L+ 
Sbjct: 921  KEMDRLKNEFVATVSHELRTPLTSIRGSLGLIQGVMAKDVPPAATRLLTIAVANCERLVA 980

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            L+NDILDL  + AG+M      +  N  +++  ++         + +   + GK  +++ 
Sbjct: 981  LINDILDLEKITAGMMAFETVLVDPNAAVSQAIEANQPYFARFGVSVAFNATGKGEAWIP 1040

Query: 683  -DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
             D  R  Q+ + +LSNA  FS +G  + +     +G    SV ++G+ IP +    +F+R
Sbjct: 1041 VDPARFQQVLANLLSNAAKFSPQGGIIDVAIEPIDGAIRISVTDHGTGIPAEFQSRIFDR 1100

Query: 742  FV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            F    S+A R ++ G GLGL I    I   GG +  +
Sbjct: 1101 FTQADSSATR-EKGGTGLGLHITRQIIETMGGTIDFA 1136


>gi|11499078|ref|NP_070312.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
 gi|2649082|gb|AAB89763.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
          Length = 908

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +++TD   AE  L +  E LRKA+E   ++V  +S++LR+PL N+ G+   L      
Sbjct: 661 AMIDITDRKMAEEKLKQTLEELRKANEELEAYVHAISHDLRAPLRNLQGYVSALVEDYGE 720

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQS 657
            L      Y+  + A +  +  L+ND+L+ A V    A + +++ + IV  D+L+ +K  
Sbjct: 721 KLEEDARFYLSRLKALTEKMDGLINDLLEYARVSKAKAEVRRVDLNLIV-EDVLDYLKDE 779

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARD- 715
           I  K         VI   KL +   DR+ L  +   ++SNA+ F  +G    +K  A D 
Sbjct: 780 IRGKS-------AVIEIEKLPAVKGDRKLLFTVMLNLISNAIKFVEEGVRPEVKVWAEDV 832

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           NG     VK+NG  IPE+  + +FN F          G G+GL+IV+  + + GG   + 
Sbjct: 833 NGKVRVYVKDNGIGIPEEYHEKIFNIFERLHGEEVYPGTGVGLAIVKKAMEVMGGRYGVR 892

Query: 776 SS 777
           S 
Sbjct: 893 SK 894


>gi|57238945|ref|YP_180081.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
 gi|58578878|ref|YP_197090.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
 gi|57161024|emb|CAH57930.1| putative histidine kinase sensor component of a two-component
           regulatory system [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417504|emb|CAI26708.1| Putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
          Length = 477

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 128/245 (52%), Gaps = 9/245 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613
           L E  E   + +  K+ F+ +VS+ELR+PL +IIGF++++K+  LG + NS   +Y+  I
Sbjct: 228 LKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPIENSDYKEYINDI 287

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
            +S   LL+L+NDILD +  +A  + + +    L  +++     +  +  +  + + KV+
Sbjct: 288 HSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPRAEQAKVHLEKVL 347

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSI 730
              K+   VAD +R+ Q+   +LSN++ F+ +  TV  +++   ++   I  + + G  I
Sbjct: 348 PSDKV-VMVADPKRIKQVIINLLSNSIKFTPENGTVKLVVRYNLEDKLIIIEITDTGIGI 406

Query: 731 P-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +D+ K  SVF + V + H  +  G GLGL + +  + L  G   I S     T I   
Sbjct: 407 AQQDLYKVMSVFGQ-VDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSEPNSGTVITLT 465

Query: 788 IPSKE 792
            P  E
Sbjct: 466 FPYTE 470


>gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
 gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
          Length = 1296

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 109/216 (50%), Gaps = 9/216 (4%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+  + +ELR+PL  IIG+T +L+  K+G    K  Q +E I  ++ +   L++D+L
Sbjct: 1065 KDEFLAILGHELRTPLNPIIGWTQMLRRGKVGP--DKHDQALEIIERNARLQTQLIDDLL 1122

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQR 686
            D++ +  G +++    I L  ++    +++     +  +++  ++ +   L    AD  R
Sbjct: 1123 DVSRIMRGSLRIAPQPITLAAIVVCALEAVRGLAEQKQVQLFEQLRTTAPLS---ADPTR 1179

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            L Q+   +L+NA+ F+  G  V ++     G    ++ + G  IP +    +F RF    
Sbjct: 1180 LQQVVWNLLTNAVKFTPAGGQVQVRLESGGGMARLTISDTGVGIPAEFLPHLFERFRQAD 1239

Query: 747  HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
             +  R  +G+GLGL IV   +  HGG V   S  EG
Sbjct: 1240 TKSTREQKGLGLGLFIVRHIVEAHGGTVQAESEGEG 1275



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 7/245 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQS 607
            RA  A   + EAL + D  K  F  +VS+E R+PL+ ++G   D+L    + +   +Q 
Sbjct: 353 ARAYEAECRRAEALAEIDRAKTVFFSNVSHEFRTPLSLLLGPLEDVLAGDGISAPTREQL 412

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
              +    +   LL LVN +LD + ++AG ++ N+    L  L  ++     + + +  +
Sbjct: 413 TLAQR---NGRRLLKLVNTLLDFSRIEAGRIQANFLPTDLASLTAQLVSVFRSAVEKAGL 469

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R+ +       +   DR    +I   +LSNA  F+ +G  + ++  +  G+    +++ G
Sbjct: 470 RLVIDCPPLAEAVYVDRDMWEKIVLNLLSNAFKFTLRGQ-IAVRLRQQTGEVCLELEDTG 528

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I       +F+RF  V+        G G+GL++V   + +HGG VS+ S     +T  
Sbjct: 529 VGIAAHELPRIFDRFHRVAGVAGRSHEGSGIGLALVAELVEIHGGKVSVQSVSGRGSTFT 588

Query: 786 CRIPS 790
            R+P+
Sbjct: 589 VRLPT 593


>gi|16330678|ref|NP_441406.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653170|dbj|BAA18086.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 633

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 18/245 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE  LT+  EA   A+  K  F+  +S+ELR+PL  IIGF+ LL      SL +     
Sbjct: 144 QAETTLTQAKEAADAANRAKTEFLASISHELRTPLNAIIGFSQLLHRDP--SL-APHRPT 200

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S   LL L+NDIL+++ ++AG   LN   I  + LL+ ++     +  E  + +
Sbjct: 201 LDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLL 260

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR-DNGD----- 718
           KV    ++  ++  D  +L Q+   +L+NA+ F+++G   +    L A + D G      
Sbjct: 261 KVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIW 320

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V + G  I       +F  F +    G +  +G GLGL I + F+ L GG + + S
Sbjct: 321 LHFLVSDTGPGIAAHEMDELFVPF-AQTETGLKSCQGNGLGLPISQKFVQLMGGQIQVRS 379

Query: 777 S-DEG 780
             D+G
Sbjct: 380 KVDQG 384


>gi|117926280|ref|YP_866897.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610036|gb|ABK45491.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 968

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 7/244 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL    E    A + K+ F+  +S+E+R+P+  I+G T+LL+         +Q +++ 
Sbjct: 579 ELALRVAKERAEAASQAKSEFLAMMSHEIRTPMNAILGITELLQEQ---PSKKEQLEFLT 635

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + +   LL L+NDIL+L+ ++AG  +L  +   L +LL  V   +        + + +
Sbjct: 636 VQAKAGQALLTLINDILELSRLEAGREQLQTAPFDLYELLRSVSTLLEPSAKHKGLSVHL 695

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I++G   +++ D +RL Q+   ++ N + F+++GS  I      NG     VK++G+ I
Sbjct: 696 EIAEGLSPNWIGDERRLRQVLINLVGNGIKFTNRGSIWISAQPMANG-LEIRVKDSGAGI 754

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  +F RF  V +    +  G GLGL+I +  ++L GG + + S  +  +     +
Sbjct: 755 NPRHHDKIFERFHQVDSTATRKHGGTGLGLAITKKLMDLMGGEIRMESQPDQGSCFTLAL 814

Query: 789 PSKE 792
           P  E
Sbjct: 815 PLSE 818


>gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 595

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 123/233 (52%), Gaps = 10/233 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           ++K ++++  FV +VS+EL++PLT+I GF D LK    G++N  +   ++++ I   +  
Sbjct: 367 IKKLEQMRTEFVSNVSHELKTPLTSIRGFIDTLKD---GAVNDPEVAGKFLDIIDIEAER 423

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L  L+N+IL L+ +++     N   + L  +++EV   +     E  + +   I++    
Sbjct: 424 LSRLINEILQLSEIESMKQDRNIEDVFLKPVIDEVFSILQQSAEERKVGLHADIAESV-- 481

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S  A++ ++ Q+   ++ NA+ ++ +  +V +KA +  G  + SV++ G  I ++    +
Sbjct: 482 SIQANKDKIKQLLINLIDNAIKYNIENGSVTVKAEQAGGKVLISVRDTGIGIEKEYLDRI 541

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF  V      +  G GLGLSIV+  +NL+ G + + S     T     IP
Sbjct: 542 FERFYRVDRGRSSELGGTGLGLSIVKHIVNLYQGRIDVDSDPGKGTEFKIEIP 594


>gi|294678584|ref|YP_003579199.1| cache sensor protein [Rhodobacter capsulatus SB 1003]
 gi|294477404|gb|ADE86792.1| cache sensor protein [Rhodobacter capsulatus SB 1003]
          Length = 699

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 3/241 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + +  A+  K +F+  +S+ELR+PL  IIG+ DLL+ S+   L   +   +  I+
Sbjct: 458 LVRMGDKIDAANRAKAAFLSAMSHELRTPLNAIIGYADLLEGSEGERLEGARLDQLRAIT 517

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           A+   L+ LV+ +LDL+ ++   + L +  + L  LL E   S   +  ++ I + +   
Sbjct: 518 AAGWDLVRLVDVVLDLSRIEGQDLALAHEPLALRPLLEEALDSQRAEAGKHGITLDLDFP 577

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
           +G L     D + L +I  ++LSNA+ ++  G  V L+ A +   F+   + + G  I  
Sbjct: 578 EGPLPPLRGDAKILRRILDELLSNAVKYNLPGGRVTLQVAPETAGFLPLRIIDTGVGIGA 637

Query: 733 DMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +   SVF  F    H      G G+GL+I + F ++ G  +   S      T   R+P +
Sbjct: 638 EHRDSVFKAFHRLGHENSTISGAGIGLAIAKRFADVSGCQLDFDSVAGAGCTFTLRLPCR 697

Query: 792 E 792
            
Sbjct: 698 P 698


>gi|262395842|ref|YP_003287695.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
 gi|262339436|gb|ACY53230.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
          Length = 828

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 134/250 (53%), Gaps = 18/250 (7%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+S
Sbjct: 305 VEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSS 361

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TK 661
            Q + V+ I +SS  LL L+NDILDL+ +++G ++L   ++V  D+   V QS+    +K
Sbjct: 362 HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLEL---SLVEADIREVVYQSMVLFQSK 418

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARD 715
                + + + +++      + D  R+ Q+ + ++SNA+ F+  G   +       + ++
Sbjct: 419 ATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGHIRVDVSYDELSEKE 478

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G  +F V++ G  I +D   ++F  F        R+  G GLGL+I    +++ GG + 
Sbjct: 479 CGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQL- 537

Query: 774 ISSSDEGVTT 783
           I++S +GV T
Sbjct: 538 IATSTKGVGT 547


>gi|229079728|ref|ZP_04212261.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228703568|gb|EEL56021.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
          Length = 363

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 133 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 191

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 192 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFHIQFQEANIECRPSFPSQKLMVLA 251

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 252 DGEKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 311

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 312 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 362


>gi|217963311|ref|YP_002348989.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|217332581|gb|ACK38375.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|307572110|emb|CAR85289.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 459

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620
           L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  +S  +T L
Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTVLSEETTRL 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +L   +L LA++D          + L     ++ Q       E  + I +  D    ++
Sbjct: 289 SSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL--DLADVNY 346

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D + L Q++S +L+NA+ F+ +G  + +    +  +    V+++G  I +     +F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQIHLYEEGTNVFVEVQDSGVGISKSDMAKIFE 406

Query: 741 RFV-SNAHRGQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  +N  R +  G  GLGLSI +  I LH G +++ SS E  TT   ++P
Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLP 457


>gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 1514

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 25/275 (9%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S DD+    QG LEL++  V                   +   V A  A  ++ EAL + 
Sbjct: 309 SLDDD---YQGFLELVAGQV-----------------ATIIADVGAYEAAKQRAEALAEI 348

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  K  F  +VS+E R+PLT ++   + L       L+  Q   +E    +S  LL LVN
Sbjct: 349 DRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLSPTQRDRLEIAQRNSLRLLKLVN 408

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
            +LD + ++AG  +  Y    +  L  E+  S  + M    + + +++   LG S   D+
Sbjct: 409 TLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTL-IVNCPPLGESVYVDQ 467

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           +   +I   +LSNA  ++  GS  +     D+     SV + G  IPE     +F RF  
Sbjct: 468 EMWEKIVLNLLSNAFKYTLAGSITVKVQGFDD-HIELSVIDTGIGIPEADLPHLFERFHR 526

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           V  A      G G+GLS+V+  + LHGG + ++SS
Sbjct: 527 VKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSS 561


>gi|149377367|ref|ZP_01895112.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358379|gb|EDM46856.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 1173

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R + E K+ F+ ++S+E+R+PL  IIG+ + L    L       S   E +  S   
Sbjct: 556 ELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLTEREKHTS--AETVVRSGRH 613

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+NDILD + +DA  + ++  ++ L +LL+E++   A +  E  +   +I +  L  
Sbjct: 614 LLDLINDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLAFHIICEYPLPE 673

Query: 680 FVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            ++ D  R  QI   +  NA+ F+ KGS  + ++  R     +  V + G  +  +    
Sbjct: 674 KISTDPTRFRQIIINLCGNALKFTEKGSISLNVRCDRQRQALVARVVDTGIGMKPEQLGR 733

Query: 738 VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F+ F   S A   Q  G GLGLSI      L GG++S++S+
Sbjct: 734 LFDPFAQGSAAIARQYGGTGLGLSISRRLAELLGGNISVTST 775


>gi|118477337|ref|YP_894488.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118416562|gb|ABK84981.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 375

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 131/242 (54%), Gaps = 13/242 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  S+  +   +  QY
Sbjct: 132 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GSQFHTNREECEQY 190

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+ S + +  L+ ++      ++ + ++  
Sbjct: 191 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSF 250

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 251 CIKGDKEL-HVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQC 309

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           IP +    VF +F    +RG++       G G+GL+I  S   LH G +++ S++ E V 
Sbjct: 310 IPNENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVF 365

Query: 783 TI 784
           TI
Sbjct: 366 TI 367


>gi|145357869|ref|NP_196633.2| AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase
           [Arabidopsis thaliana]
 gi|122227002|sp|Q3S4A7|AHK5_ARATH RecName: Full=Histidine kinase 5; AltName: Full=Arabidopsis
           histidine kinase 5; Short=AtHK5; AltName: Full=Protein
           AUTHENTIC HIS-KINASE 5; AltName: Full=Protein
           CYTOKININ-INDEPENDENT 2
 gi|74058448|gb|AAZ98829.1| cytokinin independent 2 [Arabidopsis thaliana]
 gi|332004205|gb|AED91588.1| histidine kinase 5 [Arabidopsis thaliana]
          Length = 922

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 46/292 (15%)

Query: 543 VNVTDSV--RAERALTEKNEALRKADEIKNSFVQHV--------------SYELRSPLTN 586
           + VTD V  R + A   ++ A+RKA E + +   H+              S+E+RSPL+ 
Sbjct: 325 MEVTDQVVKREKMAKLREDNAVRKAMESELNKTIHITEETMRAKQMLATMSHEIRSPLSG 384

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G  ++L T+KL   + +Q Q +  + +S  ++L L+NDILDL+ V++G+M+L  +   
Sbjct: 385 VVGMAEILSTTKL---DKEQRQLLNVMISSGDLVLQLINDILDLSKVESGVMRLEATKFR 441

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +++  V Q+ A  + ++      I+D      V D  R+ QI + ++SNA+ F+ +G+
Sbjct: 442 PREVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGDVLRIRQILTNLISNAIKFTHEGN 501

Query: 707 T-----VILKAA--RDNGD------------------FIFSVKNNGSSIPEDMCKSVFNR 741
                 VI + +  RDN                        V + G  IPE+    +F +
Sbjct: 502 VGIKLQVISEPSFVRDNALNADTEEHEQNGLTETSVWICCDVWDTGIGIPENALPCLFKK 561

Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++  S  H  +  G GLGL+I +  + L GG ++++S     +T    +P K
Sbjct: 562 YMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVSEGSTFTFILPYK 613


>gi|116694330|ref|YP_728541.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113528829|emb|CAJ95176.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a PAS sensor domain [Ralstonia eutropha
           H16]
          Length = 503

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 122/255 (47%), Gaps = 18/255 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++ D  RA+ A    N A       K+ F+  +S+ELRSPL  I+GF  L+  S   
Sbjct: 105 TCTDIEDQKRAQAAAEGANRA-------KSDFLSSMSHELRSPLNAILGFAQLM-ASDSP 156

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                Q   ++ I  +   LL L+N++LDLA ++AG   L+   + L + L E    +  
Sbjct: 157 PPPPAQQASIDQILKAGWHLLELINEVLDLAKIEAGQASLSPEPVSLAEALRECHAMVEQ 216

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  +  +R++  S      FV ADR RL QI   +LSNA+ ++    TV  + +   GD 
Sbjct: 217 QALKRGVRMRFPSF-NFPCFVRADRTRLKQILLNLLSNAIKYNRDQGTV--EVSVTAGDR 273

Query: 720 I-FSVKNNGSSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           I  SV++ G+ +  +    +   FNR    A  G   G G+GL + +  + L GG +   
Sbjct: 274 IRISVRDTGAGLAREQLAQLFRPFNRLGQEA--GPEEGTGIGLVVAKRLVELMGGSIGAE 331

Query: 776 SSDEGVTTINCRIPS 790
           S+ E  +     +P+
Sbjct: 332 SAVEAGSVFWVELPA 346


>gi|70730559|ref|YP_260300.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344858|gb|AAY92464.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1059

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 8/241 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF +VT  V   RAL     +   A+  K  F+  +S+E+R+PL  ++G  +LL  ++L 
Sbjct: 442 TFNDVTRHVEDARALDRARRSADAANAAKTLFLATMSHEIRTPLYGVLGTLELLGLTRL- 500

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +S+QS Y++ I  SS+ L  L++D+LD++ ++AG M ++       D+L +V  + A 
Sbjct: 501 --DSRQSDYLQTIQRSSSTLFQLISDVLDVSRIEAGQMSIDPLEFCPLDMLEDVLHAHAA 558

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716
                 +      D  L    + D  R+ QI + +LSNA+ F+  G  V+   L   RD 
Sbjct: 559 SAQRRGLLFYACIDPNLPDLLLGDAARISQILNNLLSNAIKFTESGRVVLRVRLLELRDQ 618

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              I + V + G  I       +F  F          G GLGL+I E    + GG + ++
Sbjct: 619 QARIEWQVTDTGIGISAQQQPQLFVPFFQVRDASNEAGAGLGLAICERLCQMMGGQMQVT 678

Query: 776 S 776
           S
Sbjct: 679 S 679


>gi|295108360|emb|CBL22313.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 714

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 121/236 (51%), Gaps = 11/236 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+   TE  +    A++ K  F+ ++S+++R+P+  IIG T L++        +K  +Y
Sbjct: 307 KAKNVATEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHD--AGNKAKVIEY 364

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  SS  LL ++ND+LD++ ++AG     YS   + D + E+     T+++E     
Sbjct: 365 ADKIDISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDFIQELDTIFHTQIYEKQQTF 424

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFS 722
            +I +     +V  D+  L+QIFS +LSNA+ ++ +G  +          +     + F 
Sbjct: 425 TIIKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYAKYRFL 484

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V +NG  +  D   ++F+ F    ++   + +G GLG++I ++ +   GG + + S
Sbjct: 485 VSDNGMGMSADFKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVES 540


>gi|225026715|ref|ZP_03715907.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353]
 gi|224955976|gb|EEG37185.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353]
          Length = 983

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 147/268 (54%), Gaps = 19/268 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   + T   +  +AL+E   A   A++ K++F+ ++S+++R+P+  IIGFT  L  S 
Sbjct: 441 ILVMSDRTSDWKMNQALSEAVHAAETANQAKSTFLSNMSHDIRTPMNAIIGFT-TLAVSN 499

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           + +    Q  Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+++K  I
Sbjct: 500 IDNQERVQD-YLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTII 558

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
           + ++H   + + + + D        D+ RL Q+   +LSNA+ F+  G TV +      K
Sbjct: 559 SGQIHAKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRLKQYPK 618

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINL 767
           A + +  +   VK+ G  + ++  + +F+ F     S   R Q  G GLG++I ++ +++
Sbjct: 619 AVKGSKLYEIRVKDTGIGMSQEFVQKIFSPFERERTSTVSRTQ--GTGLGMAITKNIVDM 676

Query: 768 HGGHVSISSSD-EGVTTINC---RIPSK 791
            GG + + +   +G   I C   RI S+
Sbjct: 677 MGGTIEVQTEQGKGTEFIVCLPLRIQSE 704


>gi|320155892|ref|YP_004188271.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319931204|gb|ADV86068.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 768

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 114/215 (53%), Gaps = 11/215 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     LN +Q ++++ +  S   ++ L+N+I
Sbjct: 316 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNEEQRKHLKTLYDSGDHMMTLLNEI 371

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G M+ + +    + ++  V     T   E  ++ KV S    G  + AD+ R
Sbjct: 372 LDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVYSTVPTGRWYCADKAR 431

Query: 687 LLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
           L Q+   +L+NA+ F+++G   +   +  R+  +++   VK+ G  IPE   K +F  F 
Sbjct: 432 LRQVLFNLLNNAVKFTARGLVEVYFEEHTREKANYLSIKVKDTGIGIPESAQKRIFRPFE 491

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  RR  G GLGL+IV+      GG V++SS
Sbjct: 492 QAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSS 526


>gi|298480193|ref|ZP_06998391.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
 gi|298273474|gb|EFI15037.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
          Length = 1365

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 126/258 (48%), Gaps = 10/258 (3%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592
            +L FV      RA+  +  + E +   K +EI   K  F  ++S+ELR+PL+ I+    +
Sbjct: 802  LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 861

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  S L     +Q   ++Y+  +   LL++VN +LD    +AG M ++ + + + +LL 
Sbjct: 862  LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 919

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +          +  I   + SD +   F ADR  +  I   +LSNA  F+  G ++ L  
Sbjct: 920  DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 979

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +   + F+V+++G  +  +    +F RF      GQR+G G+GLS+V+  +  H G +
Sbjct: 980  WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1037

Query: 773  SISSSDEGVTTINCRIPS 790
             ++S     T     +P+
Sbjct: 1038 MVASEPAQYTEFKVTLPA 1055


>gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 977

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 124/244 (50%), Gaps = 10/244 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+    E  L++  +A  ++  +K+ F+ ++S+E+R+P+  +IG T+LL  +   
Sbjct: 316 TVEDITERKYVEAQLSKACDAALESARLKSRFLANMSHEIRTPMNGVIGMTNLLLDT--- 372

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SLN++Q  + E I AS+  LL ++NDILD + ++AG M        L+D++    + +A 
Sbjct: 373 SLNNEQRDFAETIRASAEGLLTVINDILDFSKIEAGKMTFEDLDFNLHDVVESTLELLAK 432

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
           + H   I +    +  + + +  D  R+ Q+ + ++SNA+ F+  G   I  +  D+   
Sbjct: 433 QAHTKGIELAGFIEPNVPTRLRGDAGRIRQVLTNLVSNAIKFTQTGEVTIRTSCLDDQGS 492

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                  V + G  I  +  K++F  F        RR  G GLGL+I +  +    G + 
Sbjct: 493 QCQLRLQVSDTGVGISPEAQKNLFEAFNQADASTTRRFGGTGLGLAICKQLVEKMHGCIG 552

Query: 774 ISSS 777
           + S+
Sbjct: 553 LEST 556


>gi|187935122|ref|YP_001885586.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723275|gb|ACD24496.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 364

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 147/292 (50%), Gaps = 7/292 (2%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           +F   + +  D  + +  TL L++   ++ +I P+     + T    +D  +    L E 
Sbjct: 76  MFIKKMNNITDYIEEISKTLNLVATGTMDVTI-PIRRKDELGTLA--SDVNKMAYNLNEL 132

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +  RK +  KN+ + ++S++LR+PLT+I+GF +L++  K  + + K + Y       + 
Sbjct: 133 MKKERKWENQKNNLITNLSHDLRTPLTSILGFLELIE--KDTNNDEKLNHYCNISLEKAK 190

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L N ++ + +   ++   +KLN + I +  L+ +V         +NN+  ++ S  K  
Sbjct: 191 NLKNSIDQLFEFTKINNVDLKLNKTEISIEALIEQVTMGFIPAFEDNNMEFRIKSKNKGL 250

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD   L ++F  I+ N++ ++S+G  + +   ++N   I    N G  I +   +++
Sbjct: 251 KINADPILLARVFENIVINSIKYASEGKYLDIIIEKENDKVIVKFVNYGEEIKQKDIENM 310

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FNRF        ++ G GLGL+IV++ I LH G ++++SS E  T    +IP
Sbjct: 311 FNRFYRVEKSCNKKEGTGLGLAIVKTVIELHLGEINVASSKEE-TQFKIKIP 361


>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
 gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
          Length = 993

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 11/232 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA T  +EA   A++ K+ F+ ++S+E+R+P+  +IG ++LL  S   +L+ +Q ++ E 
Sbjct: 322 RANTMASEA-DAANKAKSEFLANMSHEIRTPMNGVIGMSELLLRS---TLDKEQKKFAET 377

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+AS   LL+L+NDILD + ++A  +++      L DLL+E+    + K  +  +    +
Sbjct: 378 INASGKNLLHLLNDILDFSKIEADKLEIEEIDFNLLDLLDEIINMFSYKAGKKGLNFTFL 437

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNG 727
            D  +   +  D  R+ QI   ++SNA+ F+ +G  ++ ++   D GD     F+V + G
Sbjct: 438 PDEDIPLLLRGDPGRIKQILVNLISNAIKFTDEGEILVNVELEEDFGDNARIRFTVSDTG 497

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             I E    ++F  FV       R+  G GLGLSI        GG + + S+
Sbjct: 498 IGIDESRMDAIFEPFVQADGSTIRKYGGTGLGLSISNKLARNMGGRIQVRST 549


>gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1202

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 19/234 (8%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
            L+ + EA  +A+  K+ F+ ++S+E+R+P+  +IG T+L L T +      K  +Y++ +
Sbjct: 813  LSARIEA-EQANRAKSEFLANMSHEIRTPMNGVIGLTELALMTVE----EPKAREYLQMV 867

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
              S   LL+++NDILDL+ ++AG + L      L + L    + +        +++ + +
Sbjct: 868  KKSGLTLLDIINDILDLSKIEAGKVMLEKKPFSLRESLEATLKPLDVVAQGKGLKVSLQV 927

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKN 725
            +     + + DR RL Q+ + ++ NA+ FS KG  V +    D+G+         F V +
Sbjct: 928  APDVPDALMGDRGRLRQVLTNLVGNAVKFSHKG-WVRVSVGLDDGNVSSEQATISFEVAD 986

Query: 726  NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             G  IP D   ++F+ F    S+AH  +  G GLGLSI +  + L GG +   S
Sbjct: 987  EGIGIPADKLSTIFDSFAQVDSSAHV-KYGGTGLGLSISKHLVELMGGTIQARS 1039


>gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 606

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 16/241 (6%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASST 618
           A+R+ + I++ FV +VS+EL++P+  + GF + L     G+L  K+    +++ I   S 
Sbjct: 367 AVRRLERIRSEFVANVSHELKTPVAAVKGFAETLMA---GALEDKEMARSFLQIIYDESD 423

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ DIL+L+ +++  + L +S + +  ++    Q +  +  + +I ++   + +L 
Sbjct: 424 RLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENEL- 482

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGD---FIFSVKNNGSSI 730
              AD  RL QI   +LSN + ++ +G  V      + +  DN D       + + G  I
Sbjct: 483 YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGIGI 542

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     +F RF  V  A      G GLGLSIV+    LH G +S+ S     TT N  +
Sbjct: 543 PEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNIEL 602

Query: 789 P 789
           P
Sbjct: 603 P 603


>gi|317130677|ref|YP_004096959.1| integral membrane sensor hybrid histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475625|gb|ADU32228.1| integral membrane sensor hybrid histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 1015

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 8/264 (3%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            ++P     T+  F+    TD+ R    L+EK   L + D+ K+ F+   S+E R+PL  
Sbjct: 386 PVLPFLYLLTLSLFIAKRFTDTYRKNEELSEK---LVQTDKFKDEFLAKTSHEFRTPLHG 442

Query: 587 IIG-FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           II     + +      L  +Q + + ++ + +  L +LVNDILDLA V    + +N   +
Sbjct: 443 IIAILQSMTQKEDKAPLTLQQQEKINFVISKAKHLSSLVNDILDLAKVKRRELNVNIENV 502

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +    + V +  +   H++ ++I+ +    +   +AD +RL QI   ++ NA+ ++  G
Sbjct: 503 DVYANAHIVTEVFSYITHKD-VQIENLIPRDIPFVLADEKRLRQILYNLVDNAIKYTDAG 561

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
              I  A  +NG    S+K+ G  IP +   ++F  +    H     GVGLGLSI    +
Sbjct: 562 KIQIY-ATEENGTITISIKDTGIGIPANKIDTIFYDYEQIGHADSGIGVGLGLSITRELV 620

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            L  G +S+ S     +T +  +P
Sbjct: 621 QLQQGEISVVSKLGVGSTFSFTLP 644


>gi|228914505|ref|ZP_04078114.1| hypothetical protein bthur0012_17350 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844824|gb|EEM89866.1| hypothetical protein bthur0012_17350 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 288

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 128/239 (53%), Gaps = 13/239 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QYV  
Sbjct: 48  KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQYVSI 106

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   S  L N V+D+L+   ++   ++L  S + +   + ++      ++ + ++   + 
Sbjct: 107 LKRKSYELKNQVDDLLEYCQINYREIELQKSVVNMKAFIEQIMIDFVPQLDDADMSFCIK 166

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  IP 
Sbjct: 167 GDKGL-HVEMDVALMVRLFENVISNSIMYGKDGKQILIQISKRDMNVEIEIKNFGQCIPN 225

Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
           +    VF +F    +RG++       G G+GL+I  S   LH G +++ S+D E V TI
Sbjct: 226 ENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDIAVRSNDKETVFTI 280


>gi|258510064|ref|YP_003183498.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476790|gb|ACV57109.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 370

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  E L + ++++  FV +VS+E+++PLT+I+GF   LK+  L     ++  Y++ I 
Sbjct: 134 VREMAEGLERIEQMRQEFVANVSHEMQTPLTSILGFVKALKSDGLS--EGERRHYLDIIE 191

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A S  L  L +++L L ++++G   +  +   L+  L EV  +      E  + + +  +
Sbjct: 192 AESERLSRLADNLLKLTSLESGHHPVTLTRFRLDRQLREVAIACEPLWTEKGLFLDMQVE 251

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733
                   D   L Q++  +LSNA+ F+  G  + ++  ++      SV + G  I PED
Sbjct: 252 PV--ELEGDEDLLGQVWMNLLSNAIKFTEPGGRIQVRLEKEETGVCVSVADTGIGIRPED 309

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + + VF RF        + G GLGL+I +  + +H G +S+ S     +T    +P
Sbjct: 310 VSR-VFTRFFKADRSRGKPGNGLGLAIAKRIVEMHRGDISVESEPGRGSTFKVHLP 364


>gi|215433481|gb|ACJ66706.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 566

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           DS R  + L      L+  ++ +   + +VS++L++PLT I  +  +L   KLG L   Q
Sbjct: 177 DSARRNKDLQTAIAGLKSLEQNREELLGNVSHDLKNPLTTIKSYLAMLGREKLGPLTDAQ 236

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+    +S  +L +VND+L ++ + +G M+LN     L  +  EV +++        
Sbjct: 237 RRAVQICDRNSDRMLRMVNDLLLMSRLQSGKMQLNQRPFGLKAVAEEVVRTLGALAEHCK 296

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +R+ +    ++  FV  DR+R+ +    ++ N +  S    TV ++ + ++G  + +VK+
Sbjct: 297 VRVMIPPCPEV--FVRGDRERIAEAIHNLVENGIHHSEADDTVEVRVSAEDGLAMLTVKD 354

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
           +G  +  +  + VF+ F   A  G  R  G GLGL +V   + LHGG + S S   EG T
Sbjct: 355 SGPGMSSEALEHVFDAFY-RATPGMPRPPGAGLGLPLVGKIVALHGGRMESASVLGEGST 413


>gi|254227799|ref|ZP_04921230.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|151939841|gb|EDN58668.1| conserved hypothetical protein [Vibrio sp. Ex25]
          Length = 790

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 134/250 (53%), Gaps = 18/250 (7%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+S
Sbjct: 267 VEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSS 323

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TK 661
            Q + V+ I +SS  LL L+NDILDL+ +++G ++L   ++V  D+   V QS+    +K
Sbjct: 324 HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLEL---SLVEADIREVVYQSMVLFQSK 380

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARD 715
                + + + +++      + D  R+ Q+ + ++SNA+ F+  G   +       + ++
Sbjct: 381 ATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGHIRVDVSYDELSEKE 440

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G  +F V++ G  I +D   ++F  F        R+  G GLGL+I    +++ GG + 
Sbjct: 441 CGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQL- 499

Query: 774 ISSSDEGVTT 783
           I++S +GV T
Sbjct: 500 IATSTKGVGT 509


>gi|153955726|ref|YP_001396491.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219856095|ref|YP_002473217.1| hypothetical protein CKR_2752 [Clostridium kluyveri NBRC 12016]
 gi|146348584|gb|EDK35120.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569819|dbj|BAH07803.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 321

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLL---KTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           F+  +S+EL++PL  I     +L   K+ +     +K+ +Y++ +  +   L+ L+N++L
Sbjct: 60  FISDISHELKTPLNVIFAAIQVLAACKSCEDQKCINKRDEYLKIMKENCYRLMKLINNLL 119

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ +D+G ++LN     +  ++ ++  S+   +    I +   ++ +      D  ++ 
Sbjct: 120 DISKLDSGFIRLNCHNENVVSIVEDIALSLVPYVESKGIELIFDTNVEEKIMAVDSDKME 179

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAH 747
           +I   +LSNA+ F+     + +    D+ +    VK+ G  IPED  K +F RF  + + 
Sbjct: 180 RIILNLLSNAVKFTPPEGKIYVNVQCDDENVYIVVKDTGIGIPEDKLKVIFERFGQAGST 239

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +G G+GL + +SF+ LHGG +S+ SS  G +    R+P K
Sbjct: 240 VEENQGSGIGLYLAKSFVCLHGGEISVKSSRGGGSEFTVRLPVK 283


>gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1130

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ AD++K+ F+   S+ELR+PL  +IG  + L     G +   Q + +E + 
Sbjct: 445 IKQQNDDLQTADKLKDEFLATTSHELRTPLHGMIGIAESLLAGANGPMQGAQRRQLEMLI 504

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLV+D+LD   +  G + ++   + L   +  V +     +    +RI     
Sbjct: 505 NSGQRLTNLVDDLLDYHKMRYGDLDIDKHAVDLASAVRLVLELSGHLLGTKPVRIINQIP 564

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD QRL Q+   ++ NA+ ++S+G  V+     +N   I  V + G  IP + 
Sbjct: 565 ADLPLVQADEQRLEQVLYNLVGNAIKYTSEGKIVLSATVLENQVRI-QVVDTGQGIPAEQ 623

Query: 735 CKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            + +F   V  +  H   R+G GLGL+I    + L GG + +SS     TT +
Sbjct: 624 LEHIFEPLVQANTNHANYRQGAGLGLTISRQLLELMGGRLYVSSQPMVGTTFS 676


>gi|163739314|ref|ZP_02146725.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
 gi|161387384|gb|EDQ11742.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
          Length = 764

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 128/244 (52%), Gaps = 11/244 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T +V+ E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +LL  +   +L
Sbjct: 190 LDITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDT---NL 246

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  Y   I  S   LL ++ND+LD + ++A  ++L+     L   ++EV   +    
Sbjct: 247 SDEQQLYANTIKNSGEALLVIINDVLDYSKIEAQKLELHPEPFDLERSVHEVLMLLQPTA 306

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
            +  + + +  D  L  SFV D  R+ Q+ + ++ NA+ F+S+G   + +    + GD I
Sbjct: 307 RDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTSEGHVALQITGISNAGDKI 366

Query: 721 FS----VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            S    +++ G  IPE+  + +F  F  V +    Q  G GLGL+I +  I L GG + +
Sbjct: 367 CSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAISKRLIELMGGEIWV 426

Query: 775 SSSD 778
            S +
Sbjct: 427 ESQE 430


>gi|297580266|ref|ZP_06942193.1| sensor protein tors [Vibrio cholerae RC385]
 gi|297535912|gb|EFH74746.1| sensor protein tors [Vibrio cholerae RC385]
          Length = 1020

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 120/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L S Q  YV+ I+ S   LL +
Sbjct: 501 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTSTQQHYVQVINRSGRSLLAI 557

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++ +   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 558 LNDVLDYSKIEAGHLEIDQAHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 617

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 618 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLALDGQGIRFAVEDSGIGIAEEEQATLFDA 677

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 678 F-TQADAGRRKLGGTGLGLAISRKLVKAMGGELQLAS 713


>gi|186683715|ref|YP_001866911.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466167|gb|ACC81968.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1504

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + IK+ F+  +S+ELRSPL  I+G+T +L++ K     +K +Q +  I  +  +   L++
Sbjct: 1127 NRIKDEFLAILSHELRSPLNPILGWTKMLQSRKFN--ETKTAQALASIERNVKLQTQLID 1184

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            D+LD+A +  G + L+ + + L  ++     ++ T     +I++  +    +G    D  
Sbjct: 1185 DLLDIAKILRGKLSLDVTPVNLLFVIESAIDTVNTAAIAKSIQLHPVLP-NIGQVSGDSN 1243

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            RL QI   +LSNA+ F+ KG  V ++  R +      V + G  I  +    +F  F   
Sbjct: 1244 RLQQIVWNLLSNAIKFTPKGGRVEIRLERVDEQAHIIVSDTGKGINPEFLPHIFESFRQE 1303

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                 R+  G+GLGL+IV   +  HGG ++  S  EG+  T   ++P
Sbjct: 1304 DVSITRKYGGLGLGLAIVRQLVEAHGGTITADSPGEGLGATFTVQLP 1350


>gi|326470773|gb|EGD94782.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818]
          Length = 2374

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 21/250 (8%)

Query: 550  RAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +A+ A  E N  ++    A + K+ F+ ++S++LR+P+T +IG ++LLK +KL   + KQ
Sbjct: 1864 KAKVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQ 1920

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              YVE I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     E  
Sbjct: 1921 DVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG 1980

Query: 667  IR----IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
            +     +  I    L   + D  RL QIF  +LSN+  F+  GS  +     ++      
Sbjct: 1981 LETVEDLDSIDPDLL--VMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIR 2038

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSI 774
                V + G  I E+    +F  F S A     R   G GLGLSI ++ I ++ GG + +
Sbjct: 2039 VTCKVADTGIGISEEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWL 2097

Query: 775  SSSDEGVTTI 784
             S +   TT+
Sbjct: 2098 QSKEGEGTTV 2107


>gi|262165943|ref|ZP_06033680.1| sensor histidine kinase [Vibrio mimicus VM223]
 gi|262025659|gb|EEY44327.1| sensor histidine kinase [Vibrio mimicus VM223]
          Length = 733

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 128/256 (50%), Gaps = 19/256 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 332 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 384

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS   L  ++  +K   ++
Sbjct: 385 --TVKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSS 442

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              E  ++ ++   I D +   +  D+ RL QI   +LSNA+ F+ +G   +  +  + G
Sbjct: 443 LCFEKGLQFQLHSEIIDTRW--YYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIG 500

Query: 718 DFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D  F    V+++G  IP+D    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 501 DEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGAV 560

Query: 773 SISSSDEGVTTINCRI 788
           S+ S     T    R+
Sbjct: 561 SVQSEVGQGTCFEVRV 576


>gi|163793735|ref|ZP_02187709.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180846|gb|EDP65363.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 1233

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  ++G   L+  S+L    ++Q   +     S+  LL ++NDILD +
Sbjct: 582 FLAMMSHEIRTPMNGVLGMIGLVLRSEL---TAEQRSMITLAKQSADNLLMILNDILDFS 638

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
            +++G + L      L D+++ V + ++ +     + I    D ++  + + D  RL QI
Sbjct: 639 KLESGRLDLEEVEFDLADVISSVAELLSPQAEAKGLDIISFIDTRMTLARLGDPGRLRQI 698

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              ++ NA+ F+  GS VI     D  +  F V + G  IP D    +F  F        
Sbjct: 699 LINLVGNAVKFTGSGSIVIRLEPADGDEVRFDVIDTGIGIPADTLPLLFQEFTQADSSVS 758

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RR  G GLGL+I E    L GG +S++S++   +T +  IP
Sbjct: 759 RRFGGTGLGLAICERLTRLLGGTISVTSTEGTGSTFSVIIP 799


>gi|16766623|ref|NP_462238.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16421886|gb|AAL22197.1| sensory histidine kinase in two-component regulatory system with
           ArcA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|312914355|dbj|BAJ38329.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
          Length = 778

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|295136279|ref|YP_003586955.1| two-component system sensor histidine kinase/response regulator
           hybrid [Zunongwangia profunda SM-A87]
 gi|294984294|gb|ADF54759.1| two-component system sensor histidine kinase/response regulator
           hybrid [Zunongwangia profunda SM-A87]
          Length = 815

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 136/256 (53%), Gaps = 15/256 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + D  R+++   E  EA   A+ +   +   +  ++++LRSPL  +IG+++L+  ++LG+
Sbjct: 290 IRDVRRSQQYRIELEEAKNFAETLLKRREQLMAAITHDLRSPLNTVIGYSELMNKTQLGN 349

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQSIAT 660
              KQ  Y+  I+ SS  +L+LVND+LDL+ ++AG M +         L+++ V+ +I  
Sbjct: 350 ---KQRHYLSQINKSSDFILHLVNDLLDLSKLEAGKMLVENLPFNPKKLISDTVQNNIPA 406

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716
            ++++   I  IS+   G + +D  R+ QI + +++NA  F+ KG+ +    I    +D 
Sbjct: 407 NLNKDLEVIIDISEEADGQYSSDPFRIKQIIANLVTNACKFTEKGNIIVSAEIETKTKDI 466

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
              I  VK+ G  I ++  + +F  F S  + G  +   G GLGL+I +S  +L  G +S
Sbjct: 467 QYLIIKVKDTGIGISKEKQEVIFEEF-SQENSGIEKKYGGTGLGLTITKSLTSLLKGEIS 525

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +     IP
Sbjct: 526 LQSEQGKGSEFTITIP 541


>gi|229526782|ref|ZP_04416186.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
 gi|229336940|gb|EEO01958.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
          Length = 984

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L + Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 735

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 153 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 208

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 209 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 268

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 269 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 328

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 329 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 370


>gi|160914842|ref|ZP_02077056.1| hypothetical protein EUBDOL_00850 [Eubacterium dolichum DSM 3991]
 gi|158433382|gb|EDP11671.1| hypothetical protein EUBDOL_00850 [Eubacterium dolichum DSM 3991]
          Length = 525

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 125/231 (54%), Gaps = 18/231 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + +  L  KNE LR AD +++     +S++LR+PLT+I G  D+L + +       + Q 
Sbjct: 279 KKQSELRAKNEQLR-ADLLRS-----ISHDLRTPLTSISGNADMLVSKEQELAQKDRLQL 332

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I   S  L+NLV ++L +  ++ G ++L     ++ D+L E  + ++ K  E+++ +
Sbjct: 333 YEDIYDDSLWLINLVENLLSITRMEEGAIRLKLEPQMIEDILYEALKHVSRKKKEHHLHV 392

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  +    A    ++Q+   ++ NA+ ++ +GS + L A +        V ++G+ 
Sbjct: 393 QIDDDLLMADMEA--HLIIQVIINLVDNAIKYTPQGSNITLHAYQKEDMVTIEVYDDGAG 450

Query: 730 IPEDMCKSVFNRFVSNAHRG------QRRGVGLGLSIVESFINLHGGHVSI 774
           IP+D  + +F++F    +RG       +R +GLGL++ +S ++ HGG + +
Sbjct: 451 IPDDKKEHIFDKF----YRGNTKIVDSKRSLGLGLALCKSIVHSHGGEIHV 497


>gi|157960737|ref|YP_001500771.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157845737|gb|ABV86236.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1333

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 12/251 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N     T V++T   + +  L E       A E K+ F+  +S+E+R+P++ I+   +L+
Sbjct: 652 NRHWTFTLVDITLLKQKQAELDEARLIAESATEAKSRFLAMMSHEIRTPISGILSLLELM 711

Query: 595 KTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
               +  +N+ + S   + ++ S   LLN+VND+LD + ++AG + L+ +   L+  + E
Sbjct: 712 ----VPHINTHEISGIHKNLTHSGNNLLNIVNDVLDFSKIEAGKLGLSPAVCQLSSFICE 767

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS---TVI 709
           + Q     +    I+ K+  D KL  S   D  RL Q+ + +L+NA  F+++G    +V 
Sbjct: 768 LAQPHIVHVERKGIKFKLWLDPKLAYSLTLDHLRLKQVLNNLLNNASKFTTEGEIWLSVD 827

Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           L ++ D    I F+V + G  I E     +F  F       +RR  G GLGLSI E  + 
Sbjct: 828 LISSTDTEQTIGFAVTDTGIGISEKDITKLFIPFEQVDLSSERRFSGTGLGLSICEQLVK 887

Query: 767 LHGGHVSISSS 777
           L GG +S++S+
Sbjct: 888 LMGGEISVTST 898


>gi|255014410|ref|ZP_05286536.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 602

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 129/248 (52%), Gaps = 19/248 (7%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +A++AL  + E+L +A       D +K+ F+ ++S+E+R+PL  IIGF+ L+  ++L   
Sbjct: 359 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 416

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ QY   I+ ++ +LL LVNDILDLA +++G +  +  +  L DL+  + +   + +
Sbjct: 417 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 476

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF 721
            E  I  K           +D++RL Q    IL NA+ F+S G   I  + + +  D   
Sbjct: 477 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYSAEAQDVRL 535

Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I PED  +++F RF       Q  G GLGLSI ++ +    G + + S    
Sbjct: 536 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLKSEKNK 592

Query: 781 VTTINCRI 788
                CRI
Sbjct: 593 ----GCRI 596


>gi|239908540|ref|YP_002955282.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798407|dbj|BAH77396.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 663

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 131/277 (47%), Gaps = 46/277 (16%)

Query: 541 TFVNVTDSVRAER-----------ALTEK--------------NEALRKADEIKNSFVQH 575
           T V+VT  VRAER           A+ E+              NE L++ D +K+ F+  
Sbjct: 356 TVVDVTARVRAERRLEILNRHLREAVKERTGRLAVKAAELEAANERLQELDRLKSGFLAT 415

Query: 576 VSYELRSPLTNIIGFTDLLKT------SKLGSLNSKQSQYVEYISASSTILLN------- 622
           VS++LR+PLT+I+GF  L+        +     + + ++  E I+A+  I+ N       
Sbjct: 416 VSHDLRTPLTSIMGFAKLISRDFNKFFAPFAPGHERLTRQAERITANLGIIENEGERLTR 475

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVISDGKLGSFV 681
           L+ND LDL+ +++G  +   + + ++  L+    +++     +  +R  +  +G L    
Sbjct: 476 LINDFLDLSKIESGRAQWRDTEVDVSAALSRAANAVSADFAAKPEVRFTMALEGGLPPLY 535

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+   +L NA  F+ +G  V L AA  +G     V + G  IP +  + +F++
Sbjct: 536 IDPDRLTQVLVNLLGNAAKFTDQGE-VKLAAAASDGLLRVVVTDTGHGIPRESLEKIFDK 594

Query: 742 F------VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           F       +    G+R+G GLGL+I    +  + G V
Sbjct: 595 FHQAQIGDTMEEHGRRQGTGLGLAICRQIVEHYKGRV 631


>gi|157374787|ref|YP_001473387.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157317161|gb|ABV36259.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1374

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 131/247 (53%), Gaps = 21/247 (8%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  + EK + L  A + K+ F+ ++S+ELR+PL +I+  + LL ++K G+LN KQ +  
Sbjct: 647 AQNVVEEKAKELASASKYKSEFLANMSHELRTPLNSILILSQLLASNKAGNLNDKQIESA 706

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL---LNEVKQSIATKMHENNI 667
           + I++S + LL+L+N++LDL+ V+AG ++L    +   ++   +N + Q IA    +  +
Sbjct: 707 KAINSSGSDLLSLINEVLDLSKVEAGKVELQIEDVSFQEIEQDINRLYQDIAV---DKGL 763

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAAR----D 715
              +     L + +  D  RL QI   +L+NA  F+ +G+  +         AAR     
Sbjct: 764 YFDIALAADLPNEIKTDSLRLQQILRNLLTNAFKFTHEGAVTLSITQPTNEVAARMQQPK 823

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F+VK++G  I ++    +F  F        R+  G GLGLSI +   +L GG + 
Sbjct: 824 QSLVAFTVKDDGIGIKKEKQLGIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGGTI- 882

Query: 774 ISSSDEG 780
           +  SDEG
Sbjct: 883 LLKSDEG 889


>gi|91778793|ref|YP_554001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691453|gb|ABE34651.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 776

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 9/266 (3%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           S  V E  + PL NA+  +        ++T+  RAE+ LT  N  L KAD  K+ F+  +
Sbjct: 363 SRGVCETVVKPLANARGDIYGAVSINRDITERRRAEQQLTRLNLELSKADRRKDEFLATL 422

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           ++ELR+PL  +    ++L+  +        S+ V         + +LV+D+L+++ +  G
Sbjct: 423 AHELRNPLAPMRNVLEILRLKEFADPQLSWSRDV--FDRQLQHMTHLVDDLLEVSRITQG 480

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L    + L   +    ++    +  ++  + V    +    +AD  RL Q+   +L+
Sbjct: 481 KLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLN 540

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           NA  ++  G ++ L A R+  + +  V+++G  IP +   SVF  F  ++ A    + G+
Sbjct: 541 NAAKYTPPGGSISLAAEREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGL 600

Query: 755 GLGLSIVESFINLHGGHVSISSSDEG 780
           G+GL++V     LHGG V+  S   G
Sbjct: 601 GIGLALVRGLAELHGGTVAAFSEGPG 626


>gi|54294799|ref|YP_127214.1| transmission sensor LetS [Legionella pneumophila str. Lens]
 gi|53754631|emb|CAH16115.1| Legionella transmission sensor LetS [Legionella pneumophila str.
           Lens]
          Length = 910

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 12/228 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IGFT++L  SKL  L   Q  YV+ I +S+  LL+++N IL
Sbjct: 298 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKSSAQDLLSIINAIL 354

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + +DAG + L+   + +   ++EV    +   H+  I +  I+D  +   V  D  R+
Sbjct: 355 DFSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKKVIDLIPITDINVPKMVLGDPLRI 414

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740
            QI S +++NA+ F+  G  +I        D     +F++ + G  I PED  K  + FN
Sbjct: 415 KQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTLLFAITDTGIGISPEDQTKLFTAFN 474

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++  R +  G GLGL I +       G +S++S     +T + RI
Sbjct: 475 QADTSITR-RYGGSGLGLVICKKLCEEMHGRISLTSEINKGSTFSARI 521


>gi|303246750|ref|ZP_07333027.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491767|gb|EFL51647.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 939

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 143/301 (47%), Gaps = 22/301 (7%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT----MLTFVNVTDSVRAERA 554
           +AA++   D ER  L+ T+  L D   LE    P+   ++    + ++V+VT+ +R  R 
Sbjct: 367 YAALMG--DGER--LETTVLALRDGRFLERRSGPIRQGRSTIGRVFSYVDVTEEIR-RRD 421

Query: 555 LTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            TE+ + +  +A + K +F+  +S+E+R+PL  +IG T+ L     G    +Q  +   I
Sbjct: 422 RTEQQKTMAEEASKAKGAFLAVMSHEIRTPLNVVIGLTEELLA---GEATGEQRDHFRII 478

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL +VND+LD + ++AG + L      + +L+  V    A +     +      
Sbjct: 479 QQSAAHLLGVVNDVLDFSKIEAGKLVLERIDFNVRELVAGVADVFAREARVKGLDFSTRV 538

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
           D  + +F+  D  RL Q+   +L NA+ F+  GS  +  A   +G          V + G
Sbjct: 539 DDAVPAFLRGDPGRLRQVLLNLLGNAVKFTESGSVSLDVAPAASGPPDRVGIAIRVADTG 598

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  + +F  F   A    RR  G GLGL+I +  +   GG +S+ ++  G +   
Sbjct: 599 IGIAPDRREGIFEDFQQGAGAIARRFGGTGLGLAISKGIVTRMGGTISVEANPGGGSVFT 658

Query: 786 C 786
           C
Sbjct: 659 C 659


>gi|281412573|ref|YP_003346652.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
 gi|281373676|gb|ADA67238.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
          Length = 412

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 123/237 (51%), Gaps = 13/237 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           RK DE++  F+  VS+ELR+PLT+I G+ + L       L +K+   ++++ I   S  +
Sbjct: 180 RKLDEMRREFIATVSHELRTPLTSIHGYAETLLED---DLENKELVKRFLKIIEEESARM 236

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ND+LDL  ++   +      + L +++  V + I     EN + + V  +  +   
Sbjct: 237 TRLINDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVVVK- 295

Query: 681 VADRQRLLQIFSKILSNAMDFSS---KGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCK 736
             +++RL+Q+   ++ NA+ ++S   KG   +   A D  D+ +  V++ G  IP++   
Sbjct: 296 -GNKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGIPKESQS 354

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F +F  V  A   +  G GLGL+IV++ ++ HGG + + S     T +   +P +
Sbjct: 355 RIFEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPKR 411


>gi|255526304|ref|ZP_05393220.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium carboxidivorans P7]
 gi|296185226|ref|ZP_06853636.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255510017|gb|EET86341.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium carboxidivorans P7]
 gi|296050060|gb|EFG89484.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 1116

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 16/269 (5%)

Query: 521 LSDSVLEYSIIPLPNAQTM--LTFVNVTDSVRAER------ALTEKNEALRKADEIKNSF 572
           ++D + EYS+I   +   +  L F+     V +++       + E  E L+  D++K+ F
Sbjct: 380 INDILYEYSVIDTGSYAPIGILIFIFAQSYVASDKFSMAFSKIEEMTERLKSVDKMKDDF 439

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
               S+EL++PL  I+G +  L       L + + + +  I  S+  L NLVNDILD + 
Sbjct: 440 FAATSHELKAPLDGIVGLSKSLIDCNSNQLGNDERETLILIKNSARRLSNLVNDILDFSK 499

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           + +  + L    + +  L+N V +S  + M   ++ I    +  +     D  R+ QI  
Sbjct: 500 IKSNDINLIMKPVDIRQLINMVTKSFKSFMSNKSVEILNKVEESVPYVYGDENRIQQILY 559

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749
            ++ NA+ F+++G   I  +A + GD+IF ++++ G  I E     +F  +  N   G  
Sbjct: 560 NLIGNAVKFTNEGQIEI--SAAEKGDYIFITIEDTGIGIDESDIYKIFQPY--NQVEGIN 615

Query: 750 -QRRGVGLGLSIVESFINLHGGHVSISSS 777
            Q  G GLGL + +  + LHGG + + S+
Sbjct: 616 KQYHGSGLGLYVTKKLVQLHGGELEVKST 644



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASSTILL 621
            K D++K  F  ++S+ELR+PL  I     L+++     L +     +Y+  +S ++  LL
Sbjct: 851  KNDKLKTEFFTNMSHELRTPLNVIWSTIQLIQSINANKLAAGYDMDKYLNIMSQNTLRLL 910

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             L+N+++D   ++ G + L  +   +   + E+  S A+ +    I +   ++ +     
Sbjct: 911  RLINNLIDTTKIEGGYLSLKLANGNIISTIEEITLSAASHVQSQGIELIFDTEVEEKYMA 970

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
             D  ++ +I   +LSNA+ F+ +G ++ +           SVK+ G  IPED   S+F+R
Sbjct: 971  FDGDKIERIMLNLLSNAIKFTEEGGSIFVNIYDLQDKVKISVKDTGIGIPEDKLDSIFDR 1030

Query: 742  F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F  V  +   +  G G+GL++V+S + +  G + + S+
Sbjct: 1031 FTQVDTSLSKKLEGSGIGLALVKSLVEMQKGRIYVKST 1068


>gi|253988310|ref|YP_003039666.1| signal transduction histidine-protein kinase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779760|emb|CAQ82921.1| signal transduction histidine-protein kinase [Photorhabdus
           asymbiotica]
          Length = 776

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK  F+ ++S+ELR+PL  +IGFT   LKTS    L  +Q++Y+  I  S+  LL
Sbjct: 286 QEAARIKTEFLANMSHELRTPLNGVIGFTRQTLKTS----LTIQQTEYLHIIERSANHLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N++NDILD + ++A  + L     +L + ++EV   +       NI++    D ++ + V
Sbjct: 342 NIINDILDFSRLEADKLILENIPFLLQETIDEVIVLLTPSAKNKNIQLTHSIDPQIPNLV 401

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCK 736
             D  RL QI + ++ NA+ F+ +GS  I    ++      +   +V + G  I  +   
Sbjct: 402 IGDPMRLQQILTNLIGNAIKFTEQGSVKIDINLVQQQHHKINLAMTVSDTGIGISPEQQP 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  I   GG++S +S
Sbjct: 462 HLFQAFHQADASISRRYGGTGLGLVITQKLIREMGGNISFTS 503


>gi|237719085|ref|ZP_04549566.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451464|gb|EEO57255.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1360

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 126/258 (48%), Gaps = 10/258 (3%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIG-FTD 592
            +L FV      RA+  +  + E +   K +EI   K  F  ++S+ELR+PL+ I+    +
Sbjct: 797  LLVFVIYFFIARAKMKMQVRIEQIERNKIEEISQEKVRFYMNMSHELRTPLSLILAPLEE 856

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  S L     +Q   ++Y+  +   LL++VN +LD    +AG M ++ + + + +LL 
Sbjct: 857  LLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQ 914

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +          +  I   + SD +   F ADR  +  I   +LSNA  F+  G ++ L  
Sbjct: 915  DAFALFKENAQKRAISFHIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLSL 974

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +   + F+V+++G  +  +    +F RF      GQR+G G+GLS+V+  +  H G +
Sbjct: 975  WTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQV--DGQRKGTGIGLSLVKMLVEKHHGTI 1032

Query: 773  SISSSDEGVTTINCRIPS 790
             ++S     T     +P+
Sbjct: 1033 MVASEPAQYTEFKVTLPA 1050


>gi|254415827|ref|ZP_05029584.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177254|gb|EDX72261.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1218

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 9/237 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+  +AE+ + +     ++ +E+K+ F+   S+E R+PLT I+  T+LLK        
Sbjct: 973  DITEYKQAEQEIRQALAREQELNELKSRFISMTSHEFRTPLTTILSSTELLKYYSSKFTE 1032

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIA 659
             K+  + E I ++   +  ++NDIL L   +AG +  N + +        L+ E +Q I 
Sbjct: 1033 EKKQIHFERIQSNVHHITQMLNDILLLGKAEAGKLDFNPAQMDVRQFCQQLVEEFQQGIG 1092

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
               H +++       G+L     D + L  I   +LSNA+ +S     V L+    + + 
Sbjct: 1093 ---HRHSLCFT--HQGQLTPVSLDEKLLRHILGNLLSNALKYSPIDRPVCLELTCRHNEL 1147

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IF +K+ G  I E   + +F  F    + G   G GLGLSIV+  ++ HGG +++ S
Sbjct: 1148 IFRIKDQGIGISETDQQRLFESFHRGTNVGNISGTGLGLSIVKKAVDRHGGTINLES 1204


>gi|218235769|ref|YP_002367954.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218163726|gb|ACK63718.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 458

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMS--EEERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+   T+           I S+ +NG  + ++  + +F
Sbjct: 346 IKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELEYSVIISISDNGIGMEKEEMERIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 457


>gi|167031168|ref|YP_001666399.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
 gi|166857656|gb|ABY96063.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
          Length = 588

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + Q  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 334 LLTYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 383

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+       +++++  +E I      L  L+ND+L+ +   +G+ KL  +
Sbjct: 384 VTGMHMAFGLLRERVKFPPDARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 443

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              L++LL   +   A +  +  I +    +  L    AD  +L ++   +L NA+  ++
Sbjct: 444 PCALDELLERAQLRFAEQAQQKQIELLKELEAPLPRIQADVAQLDRVLDNLLHNAIRHTA 503

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
            G  + L A R     I S+++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 504 NGGRIRLHARRHAERVIISIEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 561

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 562 IVQLHGGRMGVFSRPGQGTQFYMALP 587


>gi|332701913|ref|ZP_08422001.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552062|gb|EGJ49106.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 524

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 3/241 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A     + LR  +++++ F+  +S+E+R+PLT+I    +L+K   LG +N KQ +++E 
Sbjct: 283 QAFNRMTDQLRHEEQMRSDFISMLSHEIRTPLTSIREAVNLVKGGVLGDINEKQRKFLEI 342

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
                  L +L+  ++++++++A  M L+        L  E  + +        I I V 
Sbjct: 343 SGKEVNRLSSLLTRLMNVSSLEARDMVLDLQPADPGALTAETSERMQPTAEAKGIVILVD 402

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSI 730
           S  +L    AD + + Q+   ++ NA+ FS   S V+  LK+       IF V + G  I
Sbjct: 403 SPDRLPQVKADTENVRQVLLNLIGNALKFSPARSVVMVRLKSDEPGQRVIFCVTDQGPGI 462

Query: 731 PEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           P +    VF ++  +   R    G GLGLSI +  ++ HGG + + SS    ++    +P
Sbjct: 463 PVEEQPFVFRKYYRAKGVRNSVDGAGLGLSISKRIVDAHGGDMWLESSPGQGSSFCFSLP 522

Query: 790 S 790
           S
Sbjct: 523 S 523


>gi|332534398|ref|ZP_08410238.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036132|gb|EGI72607.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 939

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 137/259 (52%), Gaps = 21/259 (8%)

Query: 550 RAERALTEK-----------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           RA++ LTE+            + LR+A+++K+ F+ ++S+E+R+PLT I+G TD L  ++
Sbjct: 444 RAKQQLTEQVTQRTAELQAIAQELREANDVKSQFLANISHEIRTPLTAILGQTDAL-INE 502

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L    S + + +  I   S  L +L+ND+LDL+ ++A  ++LN S   + +L+N+V    
Sbjct: 503 LYEPESLKDE-LRVIQRHSDHLKSLINDVLDLSKIEANRLELNISCFDIVELVNDVHAMF 561

Query: 659 ATKMHENNIRIKVISDGKLGS-FVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            T+    N+R+  I D ++G+ F    D  R+ QI   + +NA+ F+  G  +I     +
Sbjct: 562 ITQAKAKNLRL--ILDNQVGNEFYTKLDLIRVKQILINLCANAIKFTHAGQIIIALNKSE 619

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G  +  VK+ G  +     K +F  F    +   RR  G GLGLS+ +    + GG++S
Sbjct: 620 QG-LVIIVKDTGIGMSSKQLKLIFECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYIS 678

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S  +  +  +  +P  E
Sbjct: 679 VQSEYKKGSQFSFFLPCAE 697


>gi|300864100|ref|ZP_07108999.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337916|emb|CBN54145.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1865

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 117/219 (53%), Gaps = 15/219 (6%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDI 627
            K+ F+ ++S+E+R+P+  I+GF+DLL+    GS++  Q + Y+  I+AS   LL L+NDI
Sbjct: 1383 KSEFLANMSHEIRTPMNAILGFSDLLQ----GSISDPQPRAYLNSIAASGRTLLALINDI 1438

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
            LDL+ ++AG ++L Y  + +  L+ E+++ +  K  + ++ + V I +    + + D  R
Sbjct: 1439 LDLSKIEAGKLQLQYEPVDVRSLVREIQEILDPKALKKSLSLLVEIDENVPTAILFDPIR 1498

Query: 687  LLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            L QI    + NA+ F+  G   I       L  + +      ++ + G  I  +   S+F
Sbjct: 1499 LRQILFNTVGNALKFTEAGFVKISVRAQLDLSPSSNRVQIEITIADTGIGICLEQQHSIF 1558

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              F  +  +  R+  G GLGL+I +    + GG V + S
Sbjct: 1559 EAFKQSEGQSTRKYGGTGLGLAITKRLTEMLGGTVRLES 1597


>gi|228950120|ref|ZP_04112304.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809543|gb|EEM55980.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 896

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N++  V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVKFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|229097095|ref|ZP_04228061.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|228686324|gb|EEL40236.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
          Length = 312

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 118/239 (49%), Gaps = 3/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +  R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I 
Sbjct: 74  LKESIDEERQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIY 132

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              T L  L+ND+ +   V    + L  + I + +LL ++      ++ E NI+ +    
Sbjct: 133 GKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANIQCRPSFP 192

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +    +AD ++L+++F  ++ NA+ + ++G  + L A   N      + N G  IP   
Sbjct: 193 SQKLMVLADGEKLVRVFENLIINAIAYGNEGGYIDLTAYESNNMITIDITNYGQPIPSTD 252

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F RF  V  +      G GLGL+I +S + LH G + + S D+  T     +P K
Sbjct: 253 LPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 311


>gi|227529759|ref|ZP_03959808.1| sensor histidine kinase [Lactobacillus vaginalis ATCC 49540]
 gi|227350243|gb|EEJ40534.1| sensor histidine kinase [Lactobacillus vaginalis ATCC 49540]
          Length = 380

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 537 QTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           Q ++T VN + DS  A R++ ++    RK ++ K+  + +VS++LR+PLT+IIG+  L++
Sbjct: 123 QHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGLIE 176

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +  S      +Y       +  + NLV D+ +   V      +N   I LN LL ++ 
Sbjct: 177 DKQYRS-EEDILKYTHIAYEKAKQMKNLVEDLFEYTKVQQHGSPVNIMKIDLNQLLEQLT 235

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S   +     I I    +       AD ++L ++FS +++NA+ + +  S + + A + 
Sbjct: 236 ASFELEAQHKGIEITSSVEPNPLMIEADPEKLGRVFSNLVANALKYGNGASYIKVAAHQK 295

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
               +  V N+G+ IP    + +F RF        R   G GLGL+IV+S ++LH G+V 
Sbjct: 296 QDQVVVKVSNDGTPIPAKSIEHLFERFYRAEGSRSRATGGTGLGLAIVKSIVDLHHGNVQ 355

Query: 774 ISSSD 778
           ++S D
Sbjct: 356 VTSDD 360


>gi|94501557|ref|ZP_01308075.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94426375|gb|EAT11365.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 737

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F +V    RA   L +   A  +A+  K+ F+  +S+ELR+P+  ++G   L++ S    
Sbjct: 340 FQDVDQRKRAISELEQARHAAEEANRAKSVFLASMSHELRTPMNGVLGMLQLMEGSVKQE 399

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +N ++ Q     S S+  LL +++DILD + ++AG + L+ +   +++LL+ +++    +
Sbjct: 400 VNKRRLQIA---SNSAKNLLTILDDILDFSRIEAGKLVLDSTEFSMSELLSSLQELFNIE 456

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + +    I + +  +   +  D  R+ Q+   ++ NA  F+  G  ++   + +N D   
Sbjct: 457 VEKKRSTIHIENLLQHDMYWGDEGRIRQMLINLIGNANKFTQNGQIIVRAQSGENRDLKL 516

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  IP D    +F  F        R+  G GLGL+I +    L  G +S+ S   
Sbjct: 517 SVQDTGIGIPSDRLGQIFESFTQADSSTTRQYGGSGLGLTICKRLSELMNGTISVISEQG 576

Query: 780 GVTTINCRIPSKE 792
             +     +P +E
Sbjct: 577 KGSEFTLHLPLRE 589


>gi|75764345|ref|ZP_00743870.1| Sensor protein vanS [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74488168|gb|EAO51859.1| Sensor protein vanS [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 389

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 159 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 217

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     +    +A
Sbjct: 218 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 277

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 278 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 337

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 338 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 388


>gi|323498994|ref|ZP_08103976.1| sensor protein TorS [Vibrio sinaloensis DSM 21326]
 gi|323315930|gb|EGA68959.1| sensor protein TorS [Vibrio sinaloensis DSM 21326]
          Length = 959

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 130/253 (51%), Gaps = 30/253 (11%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+      LN +Q+ YV+ I+ S + LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDE---GLNKQQAYYVDVINRSGSTLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG +++      L  ++ +V+Q +  +  E ++++  + + +LG +   
Sbjct: 522 LNDVLDYSKIEAGHLEIRPVDFDLRAMVEDVEQLLHGRATEKHLQLSCLVESELGRYWRG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           D  R+ Q+ + ++ NA+ F+  G   I  A      G  +F V ++G  I     +++F+
Sbjct: 582 DMTRISQVLNNLVGNAIKFTDHGHVDIYVAEDPEQPGRVLFEVSDSGIGISPSEQQNLFD 641

Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS---------------------D 778
            F  ++     + G GLGL+I +  +   GG +S+ SS                     +
Sbjct: 642 AFTQASGGLSSKGGTGLGLAISKKIVEAMGGELSLESSAGQGSRFWFSIPLAQGNEVEVN 701

Query: 779 EGVTTINCRIPSK 791
           E V  INCR+ +K
Sbjct: 702 EAV--INCRLKAK 712


>gi|227114812|ref|ZP_03828468.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 931

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     LN+ Q+ Y+  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L+  L++V   +A   HE  + + + I +     F
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + +L NA+ F+ +G+  I    R            +++ G  I E    
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQESHQVQLEVQIRDTGIGIAELQQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504


>gi|218897512|ref|YP_002445923.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218542283|gb|ACK94677.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 385

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     +    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384


>gi|163793384|ref|ZP_02187359.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181186|gb|EDP65701.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 458

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605
           D+VRA+  L  ++         K   + ++S+ LR+P+  +IGF+DL+    LG L + K
Sbjct: 202 DNVRADLGLAARH---------KWQTLAYLSHHLRTPMNAVIGFSDLMARESLGKLGHPK 252

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y E I  S    L  +N ILD+A ++ G M L+ S   L  L+ E     ++     
Sbjct: 253 YREYAEGIQFSGVEALRAINAILDVAEIETGTMTLSLSDENLCVLVAECVAEQSSNATSR 312

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVK 724
            + ++        S   D +RL QI   ++SNA+ F+  KGS  +  +A D   +   V 
Sbjct: 313 KVVLRCTLPDMPASVRGDPKRLRQILDGLISNAIRFTPKKGSVTVSVSAEDEEWWTVQVS 372

Query: 725 NNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  +  D  K  F  FV   N    +  G+G+ L++      LHGG   + S     T
Sbjct: 373 DTGIGMSADKVKEAFIPFVRLDNPLTQEFSGIGVSLTLARRLTTLHGGEFDLDSGTGRGT 432

Query: 783 TINCRIP 789
           T+  R+P
Sbjct: 433 TVVVRLP 439


>gi|84496734|ref|ZP_00995588.1| putative two-component sensor [Janibacter sp. HTCC2649]
 gi|84383502|gb|EAP99383.1| putative two-component sensor [Janibacter sp. HTCC2649]
          Length = 351

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 12/237 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA R+A+    + +  +++ELRSPLT + GFT  L         +++   +E I + +  
Sbjct: 120 EARRRAEHDHAALISTIAHELRSPLTGVKGFTSTLLRRWDQFTEAQRITMLEAIDSDADR 179

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQSIATKMHENNIRIKVISDGKLG 678
           L  L+ D+LD++ +D G ++++   +    +L   V++++A     +   + V S  +  
Sbjct: 180 LTRLITDLLDVSRIDTGKLRIHEIPVDSKAMLTRHVERAVAAGHDADGFTVDVESGAE-- 237

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
              AD  RL Q+ S ++ NA+    + S V+L A+    D     + SV ++G  IP + 
Sbjct: 238 EIYADSDRLDQVLSNLVENAI--RHRQSKVVLSASPHTADGERGVVISVSDDGPGIPPEQ 295

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++VF RF    H     G GLGL IV+  +  HGG   I  +  G   +   +PS+
Sbjct: 296 RRAVFGRFW---HGPSGTGTGLGLYIVKGVVEAHGGWSQIDDARGGGAVVRVFLPSE 349


>gi|120556576|ref|YP_960927.1| integral membrane sensor signal transduction histidine kinase
           [Marinobacter aquaeolei VT8]
 gi|120326425|gb|ABM20740.1| integral membrane sensor signal transduction histidine kinase
           [Marinobacter aquaeolei VT8]
          Length = 595

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 6/221 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+ EAL   D++K+ FV  VS+ELR+PLT+I G   LL     G L  K  + V+   
Sbjct: 350 LMEEREAL---DQMKDQFVATVSHELRTPLTSINGSLKLLDREAAGELPEKARKMVQVAL 406

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   L  L++D+LD     AG M L   TI +++ L +  +   +      + +  +  
Sbjct: 407 RNGEQLQLLISDLLDFNKAIAGKMMLQIGTIQVSEALEQAIEGNRSMATHYGVSLCAVPA 466

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
            +     AD QRL QI    +SNA+ FS  G+ V L A   N + I F + ++G  + E 
Sbjct: 467 AEPLVVRADPQRLRQILDNFISNAIKFSPTGAAVQLSARAVNQNTIRFIISDHGPGVDEQ 526

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
               +F RF   + + +  + G GLGL+I     +L  G V
Sbjct: 527 FIPHLFERFAQANPSSKQAQSGTGLGLAICRELAHLMHGQV 567


>gi|317152240|ref|YP_004120288.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942491|gb|ADU61542.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 507

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 116/239 (48%), Gaps = 19/239 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +A   A + K+ F+  VS+E+R+P+  ++G T+ +  + L   +++Q  YVE   
Sbjct: 222 LEVARKAAEAASQAKSDFLAAVSHEIRTPMNAVLGMTEAVLHTPL---DARQRDYVETAR 278

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S+  LL+++NDILD + ++AG ++L      L  +++   +++  +  +  + +   + 
Sbjct: 279 ESALHLLDVLNDILDFSRIEAGRLRLVSEDFDLPAVVHSAMKTVGLEAGQKGVALDFEMM 338

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FI 720
           +G       D  RL Q+   +L N + F+ +G+  +     D G                
Sbjct: 339 EGAPRFLRGDPGRLRQVLINLLGNGVKFTEQGAVRVTVGPWDGGQGGESPPDPERPVGVR 398

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           FSV ++G  IP +  +++F  F        RR  G GLGL+I    + L GG +++ S+
Sbjct: 399 FSVSDSGPGIPPEFGQAIFEAFRQGDGTTSRRYGGSGLGLAICRDLVRLMGGEITVRST 457


>gi|317154222|ref|YP_004122270.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944473|gb|ADU63524.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 843

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 16/222 (7%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQY---------VEY 612
           D++K  F+  VS+ELR+P+T+++GF  ++    +   L SL                V  
Sbjct: 370 DQLKTDFISTVSHELRTPMTSVLGFAKIIGRKIRAGVLPSLGGDADASRIAAQVLDNVGI 429

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L  ++ND+LD+A ++AG +      + + D++ +  ++         I + + 
Sbjct: 430 IVTEAERLTEMINDVLDIAKMEAGQVVWRDKAVFMGDVMRQAIEATRGLWSAKGIEVVLD 489

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +  L     D  RL+Q+   ++SNA+ FSS+G  V  +A  D    + SV ++G  IPE
Sbjct: 490 VEEGLPPLRGDHSRLVQVMVNLISNAVKFSSRGP-VTCRAHLDRNAVLVSVADHGPGIPE 548

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                +F++F  V +    +  G GLGL I    +  HGG +
Sbjct: 549 KFIHEIFDKFKQVGDTLTEKPSGTGLGLPICRQIVEHHGGRI 590


>gi|153003412|ref|YP_001377737.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152026985|gb|ABS24753.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 816

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 130/244 (53%), Gaps = 15/244 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +N  LR+AD  K+ F+  +++ELR+PL  +     LL+    G+    + + +    
Sbjct: 442 LQGRNAELREADRRKDQFLAMLAHELRNPLAPVTNAVRLLQ--DYGADAHVRERALAAAE 499

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI----ATKMHENNIRIK 670
                +  LV+D+L+++ V +G + L   T+ L  ++ E  QS+    A++ H   + + 
Sbjct: 500 RQVRHMARLVDDLLEVSRVRSGKVCLRKETVELARVVREAVQSVDELVASRGHALALEL- 558

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              D  L     D  RL Q+   +L+NA+ ++  G  + ++  R+  + + +V+++G  I
Sbjct: 559 --PDAPL-LVEGDAVRLTQVVENLLTNAVKYTDPGGHLRVELRREGREAVLAVRDDGIGI 615

Query: 731 PEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
             ++  ++F  FV  A +G    R G+G+GLS+V++ +++HGG V ++S+  G  +T   
Sbjct: 616 APELQDTIFELFV-QAEQGVDRSRGGLGIGLSLVKTLVDMHGGAVGVTSAGPGQGSTFTV 674

Query: 787 RIPS 790
           R+P+
Sbjct: 675 RLPA 678


>gi|170726313|ref|YP_001760339.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811660|gb|ACA86244.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1680

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 30/308 (9%)

Query: 506  SFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERA-LTEKNEAL 562
            S  ++ + L+ + E L D    L+ S   L   QT L      D + + RA LT K + L
Sbjct: 926  SLVEQTQRLKASEEELKDQSEALKVSNKELEEKQTFLK--RQRDEIESARADLTVKADEL 983

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              A + K+ F+ ++S+ELR+PL +++     L  +K  +LN  + +  + I      LL 
Sbjct: 984  ALASKYKSEFLANMSHELRTPLNSLLLLAKGLADNKSKNLNETEVEDAQVIFDGGNNLLC 1043

Query: 623  LVNDILDLATVDAG-----IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            L+NDI+DL+ V+AG     I ++N ST+  N  L +V   IA K  E    IKV  D KL
Sbjct: 1044 LINDIMDLSKVEAGKLSIHIEEVNISTLCRN--LRQVFNPIA-KNRELEFDIKV--DEKL 1098

Query: 678  GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARD----------NGDFIFSVK 724
             + V +D  R+ QI   +LSNA+ F+  GS  +    +A D          N    F+V 
Sbjct: 1099 PATVSSDGHRIEQILRNLLSNALKFTEAGSVTLFIGYSAADTVFSHSCLDPNTALSFAVV 1158

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  IP++  +++F  F        R+  G GLGL+I      L GG + + S     +
Sbjct: 1159 DTGIGIPQNKIQAIFEAFQQQDGSTSRKYGGTGLGLTIARELTRLLGGEIQLESEPNQGS 1218

Query: 783  TINCRIPS 790
            T    +P+
Sbjct: 1219 TFTLFLPN 1226


>gi|47564388|ref|ZP_00235433.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47558540|gb|EAL16863.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 458

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 16/237 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L+T K+     +++ Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSV--EERNHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-----VISD 674
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++     +I  
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDIIIQ 347

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G       D   L Q++S I +N++ FS+ G T+           + S+ +NG  + ++ 
Sbjct: 348 G-------DENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVMISISDNGIGMEKEE 400

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 401 MDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVQVELP 457


>gi|283850923|ref|ZP_06368208.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573569|gb|EFC21544.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 575

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 171/379 (45%), Gaps = 49/379 (12%)

Query: 447 VAVFGP--------DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           +A FGP        DGR+  +NP  RSL     + L  G  + +IAA  +R      G  
Sbjct: 58  LAAFGPVCLLVCDRDGRVLEANPRTRSLLGLAAD-LPAGLVLGDIAAPRTR------GGS 110

Query: 499 LFAAIITSFDDERKSLQG--------TLELLSDSV------LEYSIIPLPNAQTMLTFVN 544
           L        D +     G        +LE L   V       +  + PL  A+     V 
Sbjct: 111 LLPDPAHPSDPDAPDAPGPDVPADGASLEWLFRGVDGDWFPADVRMSPLAGAEAGRYLVL 170

Query: 545 VTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             D   A     AL    EA  +AD  K+ F+ ++S+E+R+PL  ++G   LL+++   +
Sbjct: 171 FEDDGEAREMVTALVAAKEAAERADLAKSEFLANMSHEVRTPLNGVLGMLQLLEST---A 227

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSI 658
           L+ +Q+ Y     A+   LL ++N ILD +     D G   + YS +    +L  + ++ 
Sbjct: 228 LDPEQADYAATALAAGRGLLGIINGILDFSRATRGDIGPRPVTYSPLT---VLRGIIEAF 284

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAAR 714
           + +     I + + +   + + V  D  R+ Q+ S ++SNA+ F+ +G+   T I+ A +
Sbjct: 285 SDQARAAGIGLSLAAGEDVAAAVRGDATRVRQVVSCLVSNAVKFTERGAVAVTAIVPAGK 344

Query: 715 DN-GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
           +  G ++  +V + G  I  +    +F  F  V  +   +R G GLGL++V+    L GG
Sbjct: 345 EGEGRWLRIAVSDTGIGIAPEHAARIFEPFTQVDGSFTRRRSGTGLGLALVKRLTALMGG 404

Query: 771 HVSISSSDEGVTTINCRIP 789
            V + S     TT+ C +P
Sbjct: 405 SVRLESRLGRGTTVTCDLP 423


>gi|254784846|ref|YP_003072274.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237684144|gb|ACR11408.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 573

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 16/255 (6%)

Query: 536 AQTMLTFVNVTDSV------RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           A  + TF N+T  V      R    L EKN AL KA   K++F+ ++S+ELR+PL  +IG
Sbjct: 158 AWLVFTFGNITLGVINSAMIRLRTRLREKNVALEKALNAKSTFLANMSHELRTPLNGVIG 217

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL+ +    LN++Q +    IS SS  LL ++N+ILD + ++AG + L  +    + 
Sbjct: 218 MVSLLEET---PLNAEQRKISGIISTSSKNLLEVINNILDFSKIEAGKVALTQAPFDPHK 274

Query: 650 LLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--- 705
           ++NE+ +       +  +  ++ I+       + D   L Q+   ++SNA+ F+  G   
Sbjct: 275 IVNEIYKISTANARDKKLDFRLNIARNLPKRLIGDAFYLKQVLLNLISNAIKFTQMGYVE 334

Query: 706 -STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
            +  ++K   D     F + ++G  I +     VF +F    N+   Q  G GLGLSI  
Sbjct: 335 FAIEVIKLEADRTFLRFRISDSGVGIDKKQQAVVFEKFAQEDNSTTRQFGGTGLGLSISS 394

Query: 763 SFINLHGGHVSISSS 777
             +   G  +++SS+
Sbjct: 395 QIVASMGSQINLSSA 409


>gi|254463944|ref|ZP_05077355.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
 gi|206684852|gb|EDZ45334.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
          Length = 755

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 21/272 (7%)

Query: 526 LEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYEL 580
           LE + +P+ +A   + ++V +   + A +   ++ E  R A E     K  F+  +S+E+
Sbjct: 332 LETNQVPMLDACGRVDSYVAIERDITAAKLHEQELEKARIAAEEGARAKADFLATMSHEI 391

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  +IG   LL+ S    LN +Q  Y   I +S+  LL L+ND+LD++ +DA  + L
Sbjct: 392 RTPMNGVIGMAQLLRDS---GLNEEQELYAGAILSSADTLLALINDVLDVSKMDAEGVSL 448

Query: 641 NYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           + +         D +  +K     K  +  + IK     +L     D +R+ QI   +  
Sbjct: 449 SCTDFDPRACFEDTMRLLKAQAEAKGLDLLLDIKACVPARLHG---DDRRIRQILLNLAG 505

Query: 697 NAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           NA+ F+ +G   +   A   G     +FSV + G  IP +M   VF RF        RR 
Sbjct: 506 NAIKFTERGQVQVTLDAEPAGQGTGLVFSVADTGIGIPREMLSKVFERFSQADAAISRRF 565

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G GLGL+I        GG +S+ +SD G+ +
Sbjct: 566 GGTGLGLAISRRLAEAMGGSISV-ASDLGIGS 596


>gi|188026160|ref|ZP_02961099.2| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827]
 gi|188021856|gb|EDU59896.1| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827]
          Length = 922

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 132/255 (51%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   ++++  V+ E++L +  +A  +A+  K+ F+  VS+ELR+PL  IIG  +LL+  
Sbjct: 415 AICVLIDISIRVQMEKSLQDVADAAEQANHAKSMFLATVSHELRTPLYGIIGNIELLQRL 474

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+ K ++ V  +  SS++LL +++DILD + +++  + + Y      D+   V  +
Sbjct: 475 E---LSDKANRLVTTMDNSSSLLLQIISDILDFSKIESNQLNIEYKLFNCRDVFAFVLAN 531

Query: 658 IATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               + +  I +   I        ++D  RL Q+ S I++N++ F+  G  V     RD 
Sbjct: 532 YLPLVAKKQIALYSFIEPNVPDLLLSDAVRLQQVISNIINNSIKFTDSG-FVFFYVWRDE 590

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 +K++G  +P+ +   +F+ F  V + +    +G GLGL+I E  INL  G + +
Sbjct: 591 NYLKIEIKDSGIGMPQAVVLQLFDPFFQVHDQNNLGHKGTGLGLAICEKLINLMDGDIEV 650

Query: 775 SSSDEGVTTINCRIP 789
           +S     ++   RIP
Sbjct: 651 NSQIGLGSSFIIRIP 665


>gi|167747901|ref|ZP_02420028.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662]
 gi|167652632|gb|EDR96761.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662]
          Length = 814

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 122/228 (53%), Gaps = 11/228 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           ++ KN+  R+  E+K++F+ ++S+E+R+P+  + G ++LL       L++KQ +YV  I+
Sbjct: 315 ISSKNQ--RRIAEMKSAFLANMSHEIRTPMNAVTGVSELLLRE---DLSAKQREYVNTIA 369

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL+++NDILD + +++G   L      L  L+ ++      K+    +   +  D
Sbjct: 370 HSSNSLLSVINDILDFSKIESGKFTLIEEEYSLRSLITDITALTVLKIGAKPVCFYIDLD 429

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDF--IFSVKNNGSSI 730
            KL +F+  D  R+ QI   +L NA+ F+ +G   +  + R +NGDF  + +V++ G  I
Sbjct: 430 EKLPAFLYGDMTRVKQIMVNLLGNAVKFTEQGHICLRLSGRIENGDFWLVMTVEDTGIGI 489

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +     +F+ F  V   H     G GLGL+I  +   +  G + + S
Sbjct: 490 RKQDMDRLFHSFEQVDTHHSHSTGGTGLGLAISRNLAEMMEGSIDVES 537


>gi|192292979|ref|YP_001993584.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris TIE-1]
 gi|192286728|gb|ACF03109.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris TIE-1]
          Length = 1191

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            F +++   R E  L++      +A   K   +  +S+E+R+PL  IIGF +++   + G 
Sbjct: 938  FRDLSQLQRTETELSQAKRLAERATGAKADVLARLSHEIRAPLNAIIGFAEVMIEERFGP 997

Query: 602  L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L N +   Y++ I AS   ++ +V+D+LDL+ ++ G + L +++I LN+L+ +    +  
Sbjct: 998  LGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASINLNELVEQSVAVMQP 1057

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719
            + +   I I+      L + VAD Q L QI   ++S ++  ++    VI+  A  D G+ 
Sbjct: 1058 RANRERIIIRTSLAHSLPTVVADAQALRQIIMNLISTSIHLANAAGQVIVSTALSDAGEV 1117

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL--SIVES 763
            +  V++ GS + +D   +    F + + R +  GV L L  ++VE+
Sbjct: 1118 VLRVRDTGSRLNDDELAAALQPFRTPSDRTEAAGVSLSLTKALVEA 1163


>gi|156973250|ref|YP_001444157.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi
           ATCC BAA-1116]
 gi|156524844|gb|ABU69930.1| hypothetical protein VIBHAR_00931 [Vibrio harveyi ATCC BAA-1116]
          Length = 786

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+   L  +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    D+   I  V++
Sbjct: 381 DLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEDDYATIIMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IP++    +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 500 STFTVSIHVP 509


>gi|118445102|ref|YP_879165.1| two-component sensor histidine kinase [Clostridium novyi NT]
 gi|118135558|gb|ABK62602.1| two-component sensor histidine kinase, putative [Clostridium novyi
           NT]
          Length = 463

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 14/233 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYISAS 616
           + + K +++K  F+  +S+ELR+PLT+I G+T  L    L   N+K S++   ++ I   
Sbjct: 233 QEILKNEKLKTEFIASISHELRTPLTSIKGWTVALN---LCDPNNK-SEFEDGLKIIEEE 288

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L NLV ++LD + + +G + L    + +++LL  +++ +  +  ++NI + +    +
Sbjct: 289 TDRLSNLVEELLDFSKLSSGKITLKKDYVDIHELLRYLQKQLQPRASKDNINLSLECKNE 348

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           + +  AD  RL Q F  IL NA+ F+S    V +  + +    I S+K+NG  IP D   
Sbjct: 349 IPNIYADINRLKQSFMNILDNALKFTSSDGEVKITLSSNKDSVIISIKDNGCGIPLDDLP 408

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTINC 786
            V  +F    ++GQ  +   G+GLSI    I+LH G++ I S  ++G   I C
Sbjct: 409 RVTEKF----YKGQNSKSKNGIGLSICNEIISLHNGNLQILSEENKGTEVIVC 457


>gi|159901169|ref|YP_001547416.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894208|gb|ABX07288.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 893

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 155/347 (44%), Gaps = 33/347 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +  +++GV V  PDG++ L N    ++    E  L  G        T       S G +L
Sbjct: 547 LQSIADGVIVLDPDGKVILVNHTATAMLGASEADLL-GKSFAEFQLTPL-----SGGAEL 600

Query: 500 FA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           FA    T+F           E  S  +L  +  P+         V V   V  ERA+   
Sbjct: 601 FATPTATTF----------YETTSQRILTMNAAPVEREGLQSGEVLVLHDVTEERAM--- 647

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                  D  K  F+  +S+ELR+PLT+I G+ DLL    +G L  +Q+Q++  I     
Sbjct: 648 -------DRAKTDFIATISHELRTPLTSICGYADLLLRGFVGPLTDEQTQFMSTIRQQGQ 700

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            ++ ++ +++ +A+++AG M+       L++LL  + Q++     +  +++ +     + 
Sbjct: 701 SMVEVLQNVIVIASIEAGNMEPQIEQHSLDELLPPIAQALQKGFDQKQLKLIIDLPENMP 760

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             V DR     + +++L NA  ++  G TV ++A         +V + G  I     + +
Sbjct: 761 YIVVDRDHFKIMLTQLLENARRYTQTG-TVTVQAKAVEQRIQIAVIDTGPGIASQDFERL 819

Query: 739 FNRFVSNAHR----GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           F RF     +     + RG+GLGL+I +  +  + G + +  S++GV
Sbjct: 820 FERFQRGGEQSGLTSKERGIGLGLAITKQLVEQNNGKIWV-ESEQGV 865


>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1353

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 115/225 (51%), Gaps = 9/225 (4%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+  K+ F+  +S+E+R+P+  ++GFT+LL  +    LN +Q  +++ +  +   LL ++
Sbjct: 820  ANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDT---PLNEQQRDFLQTLHQAGEALLTII 876

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
            NDILD + +++G + L      + + + +V   +A+K  E  + +      +  + +  D
Sbjct: 877  NDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTPETPAQIKGD 936

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
              RL QI   ++ N + F+ +G   +      R+  DF+ F V++ G  IP D    +F 
Sbjct: 937  VTRLRQILVNLVGNGIKFTHEGQVAVHVGVLKREGKDFLQFQVQDTGIGIPRDRLDRLFK 996

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             F  V  +   +  G GLGL I +    L GG +S+ S++   TT
Sbjct: 997  PFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVESTEGQGTT 1041


>gi|332702803|ref|ZP_08422891.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552952|gb|EGJ49996.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 784

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 158/344 (45%), Gaps = 29/344 (8%)

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           P GR   +NPA  S+        SP   IR +    S+ Y   +  D   AI+    +ER
Sbjct: 281 PQGRFLEANPATASILGYS----SPEESIREVKDIGSQVYVNPEQRD---AIMRMLLEER 333

Query: 512 KSLQGT---LELLSDSVLEYSIIPLP------NAQTMLTFV-NVTDSVRAERALTEKNEA 561
           +    T   +   S S+L   I   P        + +  FV ++T+ VR ER L     A
Sbjct: 334 RQHVTTEIQVRHKSGSILTLRINMHPVWDENGRPRYLEGFVEDMTERVRMERELRAAKSA 393

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K+ F+  +S+E+R+P+  I+G  ++    +    +   +Q +  +  S+  LL
Sbjct: 394 AEAANLAKSEFLATMSHEIRTPMNGILGMVEVAMRQE---PSPAVTQSLRLVRQSARALL 450

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSF 680
           +++ DILD + ++AG M+      +L +LL      +A    +  +R+ K I+     + 
Sbjct: 451 DIIGDILDFSRIEAGKMERKEQRFLLRELLRPTLDLLAQTAVDKGLRLSKHIARDVPEAL 510

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNG--DFIFSVKNNGSSIPED 733
           + D   L Q+   +L NA+ F+ +G   +       +A+D+G     F+V ++G  IPED
Sbjct: 511 LGDAASLRQVLVNLLGNAIKFTHEGEVALDVDLAEPSAKDSGYVRLRFTVSDSGIGIPED 570

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +++F  F          G GLGLSI    + L GG + + S+
Sbjct: 571 KLQTIFEPF-GQLDGASYAGTGLGLSISAKLVALLGGRLEVRST 613


>gi|332308096|ref|YP_004435947.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175425|gb|AEE24679.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 781

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 117/247 (47%), Gaps = 13/247 (5%)

Query: 553 RALTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +A   + KA + K  F+  +S+ELR+PL  I+G + +L+ +K   L+ +Q  +
Sbjct: 267 RDITERKQAENIVAKASKDKTKFIATISHELRTPLNGIVGLSRMLRDTK---LDKEQFAW 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I AS   L N+ NDI+D+  +    ++L+  T+ + D   E+   I     +  +  
Sbjct: 324 VSTIYASGITLGNIFNDIIDIDRMGRDKLELSLKTVSIKDFTEELSSIIKLLAADKGLAF 383

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVK 724
                  L  FV  D  RL QI   +L NA+ F+ KG   +   A   GD I    F V 
Sbjct: 384 DTDIKEPLPDFVEVDGTRLRQILWNLLFNAVKFTQKGKVSLSVEAHTAGDGISHVKFCVG 443

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP+     +F  +  V+        G G+GL+I +  ++L  G + +SS     T
Sbjct: 444 DTGVGIPQTELDKIFAMYYQVNLPEHQSATGTGIGLAICQQMVSLMNGDIKVSSEIGKGT 503

Query: 783 TINCRIP 789
                +P
Sbjct: 504 CFTVELP 510


>gi|311278386|ref|YP_003940617.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747581|gb|ADO47333.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 1061

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 129/244 (52%), Gaps = 9/244 (3%)

Query: 550 RAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           R++R L  E+N+A ++A+E K +F+ H+S+E+R+P++ I+GF +LL+ S       +   
Sbjct: 568 RSQRLLEVERNKA-QQANEEKRAFLSHMSHEIRTPVSAIMGFLELLQLSP-AHFTPEDKA 625

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++  + +S  LL L+ +ILDL  +++G++++    +  + L+ E     +    +  I 
Sbjct: 626 SIDQAAQASRSLLKLIGEILDLEKIESGLLEVVPQWVYPDTLVMEKMSLFSALAAQKGIE 685

Query: 669 IKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           ++   D +L S      D Q L Q+ + ++ NA+ F+S+G  V++ + +     + SV +
Sbjct: 686 LRY--DSRLDSKETMRLDPQLLGQVLTNLIGNAVKFTSQGH-VLVSSMKLRDTLVLSVSD 742

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           +G  I  +  K +F  F       Q  G GLGL+I  + +    G + + S+    TT+ 
Sbjct: 743 SGPGISAEEQKRLFTAFSQGTVGEQHSGSGLGLAISRALVTQMAGTIVLQSAINQGTTVT 802

Query: 786 CRIP 789
             +P
Sbjct: 803 LNLP 806


>gi|229144520|ref|ZP_04272923.1| hypothetical protein bcere0012_16800 [Bacillus cereus BDRD-ST24]
 gi|228638933|gb|EEK95360.1| hypothetical protein bcere0012_16800 [Bacillus cereus BDRD-ST24]
          Length = 276

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 131/245 (53%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 30  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 88

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+   + +  L+ ++      ++ + N+  
Sbjct: 89  VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 148

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + SD  L   V D   ++++F  ++ N++ +   G  + ++ +    +    +KN G  
Sbjct: 149 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 207

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S  +LH G +++ S+D+  T  
Sbjct: 208 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIADLHQGDITVRSNDKE-TVF 263

Query: 785 NCRIP 789
             ++P
Sbjct: 264 TVKLP 268


>gi|218231270|ref|YP_002367235.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|296503089|ref|YP_003664789.1| sensor protein VanS [Bacillus thuringiensis BMB171]
 gi|218159227|gb|ACK59219.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|296324141|gb|ADH07069.1| sensor protein vanS [Bacillus thuringiensis BMB171]
          Length = 385

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 384


>gi|91772433|ref|YP_565125.1| histidine kinase [Methanococcoides burtonii DSM 6242]
 gi|91711448|gb|ABE51375.1| Histidine kinase domain protein [Methanococcoides burtonii DSM
           6242]
          Length = 235

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL ++IGF+ +L   K G+ +  Q +Y+  I  +   LL + N+IL
Sbjct: 11  KSEFIMNMSHEVRTPLNSVIGFSSVL-LDKPGNRDESQVRYLHNILFNGKHLLEIFNEIL 69

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            ++ +++G M       +++++++E++ S+     E  I +  I D +     AD  +  
Sbjct: 70  AISKIESGAMVFQPKKFLISNVISEIETSMMPFALEKGIILTHIIDVENAIMNADEFKFK 129

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSN 745
            I   ++ NA+ F+  G  V ++  +      F VK+ G  I P +  K +F +F  V +
Sbjct: 130 HILYNLVHNAIKFTPDGRHVTIETKKCGKSMCFFVKDTGIGILPTNQIK-LFEQFYQVDS 188

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   +  G+GLGL+IV+ F+ +HGG V I S  E  +T    IP
Sbjct: 189 STTRKYGGIGLGLNIVKKFVEIHGGKVWIESEVEKGSTFGFSIP 232


>gi|88608550|ref|YP_505906.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama]
 gi|88600719|gb|ABD46187.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama]
          Length = 447

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 126/242 (52%), Gaps = 10/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E++ +    K+ F+ +VS+EL++PL  IIGF+DL++T+++  L ++  +Y   I 
Sbjct: 208 LKKAKESIEEISSQKSQFLANVSHELKTPLNAIIGFSDLIRTAEV--LGTEHREYANDIY 265

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LLNL+NDILD +  +   +++  +   L  L     +   TK  E  I     S+
Sbjct: 266 YSGNHLLNLINDILDFSKSELNNLEIKPTLFDLVRLTETCIRMTTTKRKEIKIVKSFFSN 325

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE-D 733
             L    +D +R+ Q+   ILSN++ F+++   + +   R   +    + +NG  IPE D
Sbjct: 326 KIL--IKSDHKRVKQVILNILSNSIKFTNEDGLIRISIIRLPSEIEIEISDNGVGIPEKD 383

Query: 734 MCK--SVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + K  SVF +  SN    ++  G G+GL + +  + L GG   I S +   T +  R+P 
Sbjct: 384 IAKALSVFGQ--SNTELSRKYDGAGIGLPLSKKLVELMGGVFEIESKEGSGTVVKIRLPY 441

Query: 791 KE 792
           +E
Sbjct: 442 RE 443


>gi|99081348|ref|YP_613502.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
 gi|99037628|gb|ABF64240.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
          Length = 896

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 125/237 (52%), Gaps = 14/237 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQ 608
           R    L E N+ L +  E K++F+  VS+ELR+P+T++  F+++L+     SLN ++Q +
Sbjct: 651 RTALQLRETNQKLTRLSEQKDAFLSQVSHELRTPMTSVRAFSEILRDEP--SLNPAEQHK 708

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I   +  L  L+ND+LDL+ +++G + LN S   L D+L+    S A    E  +R
Sbjct: 709 YASIIHDEALRLTRLLNDLLDLSVLESGSVSLNVSRRPLGDVLDHALSS-ALAGAEGPLR 767

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSV 723
           +    + +      D  RL Q+F  +++NA  + +  +      V + A R + +FI   
Sbjct: 768 VVRDRNSEAVEIETDVDRLAQVFINLIANAQKYCTAAAPELRINVRVFANRVDVEFI--- 824

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +NG+ IP D  + +F +F S     +  G GLGL+I +  +   GG + + ++ +G
Sbjct: 825 -DNGAGIPADFREMIFEKF-SRVTPERAGGAGLGLAICKEIMRKLGGDIHLLATQKG 879


>gi|172056681|ref|YP_001813141.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989202|gb|ACB60124.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 464

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E+L + DE +  F+ +VS+ELR+PL+ I G+T++++   L      + QY + I
Sbjct: 220 TLNKMAESLGEVDEQRKEFLANVSHELRTPLSYIRGYTEMMQDKALDE--KTRDQYYQII 277

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L  LVND+LDLA ++     +    +V + +L +V   +        + I  I+
Sbjct: 278 ERETERLQRLVNDLLDLAQLERDSYPMTKQPLVFSQVLEDVVYRMEPIAKAKGVSI--IT 335

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D      V  D  RL Q+   +L NA+ ++     + L    D    I S+++ G  IP 
Sbjct: 336 DFDPSQIVLGDNDRLEQVIGNLLDNALRYTPASKHIYLSTKTDGEQTICSIRDEGEGIPP 395

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +  RF  V  +   +  G GLGL+I +  I+ H G +S  S     TT+   +P
Sbjct: 396 EHLERLTKRFYRVDKSRTRKDGGTGLGLAITKHIIDRHDGTISFESVLGQGTTVLITLP 454


>gi|149198960|ref|ZP_01876001.1| sensory transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
 gi|149137955|gb|EDM26367.1| sensory transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
          Length = 493

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 10/255 (3%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           LE     L N  T+L    +  +  AERA     E   KA+  K+ F+ ++S+ELR+PL 
Sbjct: 133 LELKNEELANHGTLLEEKVIRRTRDAERA----REDAEKANVAKSQFLSNMSHELRTPLN 188

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G+T +L+ +    L  K    ++ I      LL ++NDILD++ ++AG + L Y  +
Sbjct: 189 GVLGYTQVLQNA--SDLQDKYKGSLKGIMNCGEHLLTVINDILDISKIEAGKLDLVYDEV 246

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            +  ++++ +  +  K  E  + +    D ++  S  +D  +L QI   ++ NA+ +++ 
Sbjct: 247 DVLKVVSDTEDILRYKALEKGLSLNHSLDPEIPQSIKSDPTKLRQILVNLVGNAVKYTAS 306

Query: 705 GSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           G  V LK  + +GD I FS+ + G  IP+D    VF  F  +    Q  G GLGL+I   
Sbjct: 307 GG-VELKLKK-SGDMIKFSIIDTGIGIPKDKQSHVFEAFRQDEGGRQEGGTGLGLAICVK 364

Query: 764 FINLHGGHVSISSSD 778
            +   GG + + S +
Sbjct: 365 LVEAFGGEIGLESEE 379


>gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt
           domain-containing protein [Geobacter bemidjiensis Bem]
 gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator lipoprotein, HAMP and
           Hpt domain-containing protein [Geobacter bemidjiensis
           Bem]
          Length = 818

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 14/235 (5%)

Query: 553 RALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L E  E +R+A E        K+ F+  +S+E+R+P+  ++G T+LL  + L   + +
Sbjct: 163 RQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTYL---SKE 219

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q+++VE +  S   LL ++N+ILD + ++AG M+L      L+ L  +     A      
Sbjct: 220 QARFVESVRCSGEALLGIINNILDFSKIEAGRMELEMIPFDLHQLTADAVAMFADDAARK 279

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSV 723
            I +   I  G    F  D  RL Q+   +L NA+ F+ +G+ T+ +   R       +V
Sbjct: 280 GIALSCRIEPGLPVMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLVRRPALVRVTV 339

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++ G  I  +  + +F+ F        RR  G GLGL+I +    L GG + +SS
Sbjct: 340 EDTGIGISREAQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGGMELSS 394


>gi|108760619|ref|YP_635056.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108464499|gb|ABF89684.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 574

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 133/266 (50%), Gaps = 20/266 (7%)

Query: 538 TMLTFVNVTDSVRA----ERALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           T+L F      VRA    E A TE+       R A ++++ F+   ++ELR+PLTN+   
Sbjct: 307 TLLLFFITRSQVRARTSAEAANTEQQRLTGEARDAVQVRDDFLSIAAHELRTPLTNLKLQ 366

Query: 591 TDLLKTSKLG--SLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             LL        +L+  K +Q V      ++ L  LV+ +LD++ +  G M+LN   + L
Sbjct: 367 LQLLYRQLRREEALDVEKLAQRVLSCERQTSRLATLVDSLLDVSRLARGRMELNLEPVDL 426

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++L+ E  +   T+     +++ V S   + G +  DR RL Q+ + +LSNA+ +   G+
Sbjct: 427 DELVREAVRRFETEARTAGVQVTVDSPAPVTGQW--DRMRLEQVLTNLLSNALKYG-HGA 483

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVES 763
            V ++   D    +  V++ G  +P +  + +F RF   VS+ H G   G+GLGL I   
Sbjct: 484 PVDVRVRSDETQAMVEVEDRGIGLPPEDAQRIFGRFERAVSSRHYG---GLGLGLFITRQ 540

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +   GGH+S++S+     T    +P
Sbjct: 541 LVEALGGHISVASTPGQGATFTVALP 566


>gi|52222390|gb|AAU34074.1| ethylene receptor [Solanum lycopersicum]
          Length = 736

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  ++  + LL+ S+L
Sbjct: 313 ESMRARDLLIEQNVALDLARREAETAVRARNDFLGVMNHEMRTPMHAVVALSSLLQESEL 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  EV   I 
Sbjct: 373 ---IPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHALFREVLNLIK 429

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                  + + + +S       + D +RL+QI   ++ NA+ FS +GS  +      +  
Sbjct: 430 PVAAVKKLFVTLSLSSDFPEVAIGDEKRLMQILLNVVGNAVKFSEEGSVSVSAVNAKSES 489

Query: 719 FI-------------------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            I                     VK+ GS I P+D  K +F +F  N     +   G GL
Sbjct: 490 LIDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDFPK-LFCKFAQNQEPATKNSAGTGL 548

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 549 GLAICKRFVNLMEGHIWIESEGVG 572


>gi|302548928|ref|ZP_07301270.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302466546|gb|EFL29639.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1440

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 18/243 (7%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L EK   L  A + K+ F+ ++S+ELR+PL +++    LL  +  G L  ++ Q+   I 
Sbjct: 939  LEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNPDGHLTDQEVQFATTIH 998

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S + LL L++DILDL+ ++AG M +   T+ L  LL+ V  +      +  +  ++  +
Sbjct: 999  RSGSDLLQLISDILDLSKIEAGRMDVRPKTLPLIKLLDYVHATFRPLTIDRGLGFEIAVE 1058

Query: 675  GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----------DNGDFI-- 720
              +     +D QRL Q+   +LSNA+ F+  GS V L+  R            N D +  
Sbjct: 1059 KDVPAELYSDEQRLQQVLRNLLSNAVKFTHDGS-VELRVNRVAGMQFAEETLRNADHVIA 1117

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            FSV++ G  I  +    +F  F  +     R+  G GLGLSI      + GG + ++ S+
Sbjct: 1118 FSVRDTGIGIAPEKLPMIFEAFQQSEGTTNRKYGGTGLGLSISREIAGMLGGKI-VAESE 1176

Query: 779  EGV 781
             GV
Sbjct: 1177 PGV 1179


>gi|238920517|ref|YP_002934032.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Edwardsiella ictaluri 93-146]
 gi|238870086|gb|ACR69797.1| sensor kinase protein RcsC [Edwardsiella ictaluri 93-146]
          Length = 984

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 131/255 (51%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 470 AICAMVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK 529

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L  +  + +  +S SS +LL ++NDILD + +++  +K+     V  +++  +  +
Sbjct: 530 ---TLPEEVQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGN 586

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    + ++  +   D  R+ Q+ S +LSNA+ F+  G  +IL+A  ++
Sbjct: 587 YLPLVVRKRLTLYCFIEPEVPEALSGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVND 645

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
               F V++ G  IP      +F+ F       QR   G GLGL+I E  ++L  G +++
Sbjct: 646 FYLEFRVRDTGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAV 705

Query: 775 SSSDEGVTTINCRIP 789
            SS    +    R+P
Sbjct: 706 ESSPGLGSIFTIRLP 720


>gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus
            degradans 2-40]
 gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
            2-40]
          Length = 1653

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 128/260 (49%), Gaps = 17/260 (6%)

Query: 530  IIPLPNAQTMLTFVNVTDSVR----AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            + PL N  T+   +  T ++R    A++AL +   A   A   K+ F+  +S+E+R+PL 
Sbjct: 965  LAPLIN--TVGQMIENTRAIRERDNAQQALVKAKNAAELAARTKSEFLAMMSHEIRTPLN 1022

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             ++G  +L+K ++L     KQ   ++   +S+  LLNL+NDILD + VDAG + L     
Sbjct: 1023 GVLGMLNLVKRTQL---EDKQRYQIDIAKSSAESLLNLINDILDFSKVDAGKLDLEVVDF 1079

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSS 703
             +  LL ++  ++A +  E    + +I   KL       D  RL QI   ++ NA+ F+ 
Sbjct: 1080 NIITLLEDIAHAMAGRALERGNEL-IIDTTKLEFTYLSGDPSRLRQILVNLIGNAIKFTQ 1138

Query: 704  KGSTVILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
             G   +  +   N    +   SV + G  I E+    +F+ F        R+  G GLGL
Sbjct: 1139 NGEVTVTASLTKNTSGFNLNISVADTGIGIAEEKIPLLFSAFTQVDASTTRKYGGTGLGL 1198

Query: 759  SIVESFINLHGGHVSISSSD 778
            +I +    L GG ++I+S +
Sbjct: 1199 AICKKLCALMGGDINITSQE 1218


>gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1261

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 12/243 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
             ++T    AE  +    E   +A  IK  F+ ++S+E+R+P+  +IG T L LKT    
Sbjct: 500 LADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTD--- 556

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q +Y+  I  S   LL ++NDILD + ++AG + +      L+ +L+ V   I+ 
Sbjct: 557 -LTPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISE 615

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716
           K     + +    D  L   F+ D  RL QI     +NA+ F+ +G   I   L+  RD 
Sbjct: 616 KATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQ 675

Query: 717 GDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              ++ +VK+ G  I  +   ++FN F        R   G GLGL+I +    L GG V 
Sbjct: 676 DVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVG 735

Query: 774 ISS 776
           + S
Sbjct: 736 VES 738


>gi|158334818|ref|YP_001515990.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF [Acaryochloris marina MBIC11017]
 gi|158305059|gb|ABW26676.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF [Acaryochloris marina MBIC11017]
          Length = 1633

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 3/233 (1%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            + +A R+ +E+K+ F+   S+E R+PLT I+G T+L+K    G   +KQ  Y++ I  + 
Sbjct: 1392 REQAEREINELKSRFISMTSHEFRTPLTAILGTTELIKHYGQGWDTNKQHTYLDRIQKNV 1451

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              +  L++D+L L+  D   ++ N   I L    + + +        +  +I+       
Sbjct: 1452 KHMTGLLDDVLVLSKADVNKVEFNPKLINLEVFCSSLVEEFQLNTKRDQ-QIEFEFFWNQ 1510

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                +D + L QI S +LSNA+ +S + ++V  +   +  +  F +K+ G  IPE   + 
Sbjct: 1511 HEVYSDEKILRQILSNLLSNAIKYSPESTSVRFQVNVNEEEATFFIKDQGIGIPEADQQH 1570

Query: 738  VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIP 789
            +F  F    + GQ +G GLGL+IV+  + LH G +   S +D+G T I  ++P
Sbjct: 1571 LFESFHRATNVGQIQGTGLGLAIVKKSVELHRGTIDFESIADQGTTFI-VKLP 1622


>gi|89901133|ref|YP_523604.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89345870|gb|ABD70073.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 602

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 7/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+  K+ F+  +S+ELRSPL  ++GF  L++T        +Q+  +E I      LL L
Sbjct: 223 KANLAKSEFLSGMSHELRSPLNAVLGFAQLIETGTPAPTPGQQAS-LEQILRGGWYLLTL 281

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N+ILDL+ V++G + L+   ++L++  ++ +  I  +  +  IR+   S        AD
Sbjct: 282 INEILDLSLVESGKLSLSMEPVLLSEKFSDCRAMIDPQAQKAGIRVSFASFDSPCFVEAD 341

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSV---F 739
           R RL Q+   +LSNA+ ++  G +V +  +    G    SV + G  + ++    +   F
Sbjct: 342 RTRLKQVIVNLLSNAIKYNRAGGSVEVTCSTPAAGRIRISVIDTGPGLSDNKLAQLFQPF 401

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           NR    A  G + G G+GL + +  + + GG + + S
Sbjct: 402 NRLGQEA--GTQEGTGIGLVVCKRLVEMMGGEIGVHS 436


>gi|89096702|ref|ZP_01169594.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89088717|gb|EAR67826.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 458

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 119/237 (50%), Gaps = 5/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++ T     L+  DE + SF+ +VS++ +SPL NI G+ +LLK   L    +++ QY+E 
Sbjct: 225 QSFTTMQRQLQHNDEARKSFISNVSHDFQSPLMNIQGYAELLK---LDVNETERVQYLEI 281

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+  S  L +L   +L + ++D     +  S +  +  + +  +     + E  I +   
Sbjct: 282 INDESKRLSHLTKQLLIMTSLDQNAYPMKVSEVRADKQIKQAIRRYQWLIEEKEIEVSY- 340

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            + +   F  D + +  ++  +++NA+ +SS G ++ +   +   D + + K+ G+ + E
Sbjct: 341 -NLEHCVFKYDAELMTNVWDNLMTNAIKYSSPGDSMWIGLEKRETDLVITFKDTGAGMSE 399

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F+RF       ++ G GLGLSIV+  I+LH G +S++S     T     +P
Sbjct: 400 KEMDQIFDRFYRVDSARKKGGTGLGLSIVKQIIDLHDGKISVASKPGEGTVFTITLP 456


>gi|271969947|ref|YP_003344143.1| histidine kinase [Streptosporangium roseum DSM 43021]
 gi|270513122|gb|ACZ91400.1| Histidine kinase [Streptosporangium roseum DSM 43021]
          Length = 593

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 15/236 (6%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISA 615
           E+ EA RKA       V  VS+ELR+PL+N+ G+ +  +   +  L+++  +  VE I  
Sbjct: 363 ERMEAQRKA------MVSDVSHELRTPLSNLRGWMEAAQDG-VAELDAELIASLVEEI-- 413

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
              +L ++V+D+ +LA  DAG ++L+   + + DLL++V  +   +     + +   + G
Sbjct: 414 --MLLQHIVDDLQELALADAGKLRLHPEPVNVADLLDQVATAHRGRADSAGLTLTADTAG 471

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
             G  +AD  RL Q    ++SNA+ ++  G  + L+    +G  +  V + G  I  +  
Sbjct: 472 DPG-LLADPVRLRQAVGNLVSNAVHYTPPGGRIALRGRLADGHVLIEVADTGVGIAPEHL 530

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             VF+RF        RR  G GLGL+IV +    H G VS++S+         R+P
Sbjct: 531 PRVFDRFWREEKSRNRRTGGSGLGLAIVRNLAEAHHGTVSVASTPGEGAVFTLRLP 586


>gi|217969790|ref|YP_002355024.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T]
 gi|217507117|gb|ACK54128.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T]
          Length = 767

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 18/239 (7%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL     A   AD +K++F+  +S+ELR+PL +IIGFT +L     G LN +QS+ +  +
Sbjct: 506 ALLAAKHAAESADRLKSAFLATMSHELRTPLNSIIGFTGILLQRLAGPLNDEQSRQLGMV 565

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL L+ND+LD++ ++AG +++ +    +   +++V  +I   + E   R+ +  
Sbjct: 566 QDSARHLLALINDVLDISKIEAGELRIAHEAFDIAASIDKVA-AIVRPLAERK-RLCLQV 623

Query: 674 DGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVIL----KAARDNGD-------F 719
           +   G  V   D +R+ QI   +L+NA+ F+  G  TV L    + A D G         
Sbjct: 624 ERMTGPLVMTGDMRRVEQIALNLLTNAIKFTEHGRVTVTLELESQHAADAGPERAGRPAV 683

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              V + G  I  +  + +F  F  + +    Q  G GLGL+I +  + L GG +++ S
Sbjct: 684 RLCVADTGMGIRHEDLELLFQPFRQIDSTLSRQHEGTGLGLTICKRLVALMGGEITVDS 742


>gi|218235425|ref|YP_002366588.1| sensor protein VanS [Bacillus cereus B4264]
 gi|218163382|gb|ACK63374.1| sensor protein VanS [Bacillus cereus B4264]
          Length = 291

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 140/274 (51%), Gaps = 14/274 (5%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +SD   E  I  L N +      NV    R  ++L E  E  +K+ E+KN  + ++S++L
Sbjct: 19  ISDGNFEIHIPILKNDEIGELAANVN---RMAKSLKESIENEKKSQEMKNEMISNISHDL 75

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+T++IG+ DLL  +KL S   +  QYV  +   S  L N V+D+L+   ++   ++L
Sbjct: 76  RTPVTSLIGYADLL-GNKLHSNGEECEQYVSILKRKSYELKNQVDDLLEYCQINYREIEL 134

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +   + +  L+ ++      ++ + N+   + SD  L   V D   ++++F  ++ N++ 
Sbjct: 135 HKDEVDMKALIEQIMIDFVPQLDDANMSFYIKSDEVLHVEV-DVTLIVRLFENVIGNSIM 193

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVG 755
           +   G  ++++      +    +KN G  IP++    +F +F       ++H G   G G
Sbjct: 194 YGRDGKGIVIEIFNKTMNVEVEIKNFGQCIPKEDLPYIFEKFYRSEKSRSSHTG---GKG 250

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +GL+I +S   LH G +++ S+D+  T    ++P
Sbjct: 251 IGLAISKSIAELHQGDITVRSNDKE-TVFTVKLP 283


>gi|297162453|gb|ADI12165.1| Signal transduction histidine kinase-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 1154

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 10/236 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISAS 616
           + EAL + D  K +F  +VS+E R+PLT ++G     L          ++ + +E    S
Sbjct: 333 RAEALAELDRAKTTFFSNVSHEFRTPLTLLLGPVQQALSVED----RPERRRQLELAERS 388

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL LVN +LD++  +AG ++ ++  + L+ +  E+     +      + ++V     
Sbjct: 389 ALRLLKLVNTLLDVSRAEAGRLRGHFEPVDLSRVTAELAAVFRSAFDLAGLSLRVECPPL 448

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            G    DR+   +I   +LSNA+ F+ + G TV L AA D      +V + G+ +P +  
Sbjct: 449 PGPVHVDREMWEKIVLNLLSNALKFTFAGGVTVRLAAAGDRAR--LTVADTGTGVPPEEL 506

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A      G G+GL++V+  + LH G VS+SS     +T    +P
Sbjct: 507 PYLFDRFHQVRGARSRSHEGSGIGLALVKDLVELHAGTVSVSSRPGEGSTFTVEVP 562


>gi|284920828|emb|CBG33891.1| Two-component sensor kinase and response regulator [Escherichia
           coli 042]
          Length = 904

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPTKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGVLSATSTPEVGSCFCLRLP 651


>gi|260428938|ref|ZP_05782915.1| PAS domain containing protein [Citreicella sp. SE45]
 gi|260419561|gb|EEX12814.1| PAS domain containing protein [Citreicella sp. SE45]
          Length = 463

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 27/348 (7%)

Query: 206 VWHRDQAGDILWANISYKKNTETEGI--------VFQKAIGESRKLFKEEIKKRMISSSA 257
           +W  D    ++W+N  +       G+             IGE   + +  I  R  +S A
Sbjct: 113 IWQTDADRRVVWSNAGFADLCAQAGLPDHSVPPFAILPDIGEEYHVTRSSIGSRAENSQA 172

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
               + E          +SY++      + ++  A+ +  EI   + L     I  +L +
Sbjct: 173 ----WFEV---------QSYRLPDGWLHYAQSIDAV-IHAEIAQRNFLQTLTRIFAHLPI 218

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           A+A+FD++R L   N + V+L  +   FL+  P+     + LR    +PE  ++  W++ 
Sbjct: 219 ALAVFDRDRRLVLFNPALVDLTGLAADFLSARPNLLSFFDMLREKRMMPEPKDYGGWRDT 278

Query: 378 IFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
           +  V  ++ T  + +TW+L +G T  V    +P GG  ++FE++T ++ L  ++   ++V
Sbjct: 279 LRDVIAAASTDHYIETWNLASGLTYRVTGRPHPDGGVAFLFEDITAEISLTRRFRQEIEV 338

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +D L + VAVF   G +   N A+R +W  + +     T I + +       + S 
Sbjct: 339 TQAVLDSLDDAVAVFSQLGVLSFCNAAYRDMWGGDPDGSLADTDIADASRLWQAGCDPSP 398

Query: 496 GW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            W DL   ++T  D  R      L       L     PL    TM+ F
Sbjct: 399 IWPDLRDFVLTLRD--RAGWDAELTRQDGQTLTLRAEPLVGGSTMVRF 444


>gi|255020489|ref|ZP_05292554.1| Putative sensor-like histidine kinase YfhK [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970099|gb|EET27596.1| Putative sensor-like histidine kinase YfhK [Acidithiobacillus
           caldus ATCC 51756]
          Length = 499

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F++ +S+EL++PLT I    +LL+      L+ +Q + V  +  +S  L  L+ D+L
Sbjct: 251 KIHFLRQLSHELKTPLTAIREGAELLQEDLGHELDPEQREIVHIVRDNSLRLQRLIEDLL 310

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQR 686
             +  +  +       + L+ LL E+ QS    +   N+R+    D +L   +    R R
Sbjct: 311 RFSIAEGPVAAGMQQDVRLDALLEELTQSYKPVLRSKNLRL----DMELAPLLVAGHRDR 366

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L  I   +LSNA+ FS +G+T+ L+    +GD +  V + G  +  +  + +F+     +
Sbjct: 367 LRTICDNLLSNAVKFSPQGTTIRLRLQPVDGDAVLDVMDAGPGVTPEEREKIFDILYRGS 426

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             GQ +  G GLGL+I   ++  +GG + I  SD       CR+P
Sbjct: 427 ASGQGKVEGSGLGLAIAREYVTSYGGSLEIVDSDGPGAHFRCRLP 471


>gi|254458747|ref|ZP_05072171.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207084513|gb|EDZ61801.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 685

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 132/246 (53%), Gaps = 11/246 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+ +K+ F+ ++S+E+R+P+  IIGFTDLL+ S   + N     YV+ + 
Sbjct: 217 LKQAKEEADSANNMKSEFLANMSHEIRTPMNAIIGFTDLLEKSVKDTTN---QNYVKSVQ 273

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            SS ILL ++NDILDL+ V+AG +++ +    +  + +E+K     K     +++KV I 
Sbjct: 274 DSSKILLAIINDILDLSKVEAGKLEIQHIATDIRTIGDEIKNVFYHKAKSKALKLKVNIE 333

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI---FSVKNNGS 728
           +    S + D  R  Q+   ++SNA+ F+ +G  +  I  +   + + I     V+++G 
Sbjct: 334 ESVPSSLMLDEVRTRQVLLNLISNAIKFTPEGFVNLNIFSSLNQDTNLINLTIEVEDSGI 393

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + +     +F  F  + ++  +   G GLGL+I +  + L GG +S+ SS +  +T   
Sbjct: 394 GMDKSEQDKMFEAFAQHTNQSNKEYGGTGLGLAITKKLVTLMGGDISVKSSKDNGSTFRI 453

Query: 787 RIPSKE 792
            +P+ E
Sbjct: 454 ILPNIE 459


>gi|160942539|ref|ZP_02089788.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446172|gb|EDP23174.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii
           M21/2]
          Length = 843

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 122/239 (51%), Gaps = 9/239 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD  +   A+    E   KA + K  F+ ++S+++R+P+  IIG T L+K         K
Sbjct: 438 TDEHQTTLAVEAALEVAEKASKAKTDFLSNMSHDIRTPMNAIIGITTLMKNEL--HQPEK 495

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            ++++  + +S  +LL ++NDILD++ +++G   LN   I L   +++++  I  +  + 
Sbjct: 496 LAEHLAKLESSGQLLLGIINDILDMSRIESGKTTLNVEKINLPRQISQLESVIRQQAGQR 555

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFI 720
                V +  +  + + D  RL Q+   ILSNA+ ++  G  + L+            + 
Sbjct: 556 RQTFTVETHVQHENVLGDPNRLKQVLMNILSNAVKYTPNGGHIRLEIDELTHTEHYTKYR 615

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F V++NG  + E+  K++F  F      G  +  G GLG++I +S ++L GG + + S+
Sbjct: 616 FVVQDNGIGMSEEFQKTLFEPFTREEKSGTNKVQGTGLGMAITKSIVDLMGGTIHVEST 674


>gi|153809952|ref|ZP_01962620.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174]
 gi|149834130|gb|EDM89210.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174]
          Length = 904

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 25/252 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE- 611
            AL E  +A   A+  K +F+ H+S+++R+P+  I+GFTD+       ++  K  + VE 
Sbjct: 514 EALKEAQDA-NAANIAKTTFLNHMSHDIRTPMNAIVGFTDI-------AMKRKPDKEVED 565

Query: 612 ---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIV--LNDLLNEVKQSIATKMHENN 666
               I  SS  L+ L+ND+LD++ +++G  KL Y  ++  L D+ + V       M   +
Sbjct: 566 CLKKIRQSSEYLMTLINDVLDISRIESG--KLEYKPVLVDLRDMTDTVLSIARGYMENRD 623

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFI- 720
           +   V  +     +V AD  R+ ++   I+SNA+ F+  G T+   A     +D    I 
Sbjct: 624 LNFSVSREELKNPYVMADELRIREVLLNIISNAVKFTKDGGTISFVAENCPGKDEHHLIV 683

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + + + G  + E+    +F+ F   +N  R   +G GLG++I + +++L GG + +SS 
Sbjct: 684 RYHISDTGIGMSEEFQTRIFDEFSQENNGARTSYKGTGLGMAIAKQYVDLMGGKIEVSSR 743

Query: 778 DEGVTTINCRIP 789
               +     IP
Sbjct: 744 QGVGSAFTVEIP 755


>gi|78355591|ref|YP_387040.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217996|gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 981

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 14/222 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +A + K  FV  +S+ELR+P+  IIG  ++ LKT     L  KQ +Y+  I +S+  LL 
Sbjct: 264 QASKAKGDFVASMSHELRTPMNAIIGMIEIALKTE----LTVKQREYLTIIRSSARSLLG 319

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
           +VNDILD++ ++A  M+L +      ++L EV      ++    + + +  +  + +  V
Sbjct: 320 VVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDLFRERVGMKGVELVLDIEADVPAVLV 379

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL Q+   +++NA  F+ +G   I  A    ++D     FSV++ G  I E+    
Sbjct: 380 GDPLRLKQVLVNLVTNAFKFTKQGEVRIRVAVGSRSQDVVQLEFSVRDTGLGIGEEARNR 439

Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           +F+ F S A     R   G GLGLSI    + L GG ++++S
Sbjct: 440 LFDTF-SQAEGSTARLFGGSGLGLSIARELVRLMGGTITVAS 480


>gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1013

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 124/259 (47%), Gaps = 15/259 (5%)

Query: 531 IPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            PL +   ML  V     ++TD  RAE AL    +   +A  +K+ F+  +S+E+R+P+ 
Sbjct: 442 FPLLDRDRMLYAVGGVATDITDRKRAEEALALARDQAMEAARLKSEFLATMSHEIRTPMN 501

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG T+LL  S   +L  +Q +  E +  S   LL ++NDILD + ++AG + L     
Sbjct: 502 GVIGMTNLLLES---ALTPEQRECAEVVRNSGDHLLMIINDILDFSKIEAGRLTLETIDF 558

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704
               ++++    IA +  +  + +  + D  + S V  D  RL Q+   +L NA+ F+ +
Sbjct: 559 DFRGMIDDTLDLIAEQARQKGLDLVGLIDASVPSAVRGDPGRLRQVLINLLGNAIKFTDR 618

Query: 705 GSTVI-LKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           G  V+ +  A+D    +     V + G  I  +    +F  F        RR  G GLGL
Sbjct: 619 GEVVLRMTVAQDAQSHVVLRGDVTDTGIGISPEGRNKLFQTFSQVDASTTRRYGGTGLGL 678

Query: 759 SIVESFINLHGGHVSISSS 777
           +I +    L  G + + S+
Sbjct: 679 AICKRLTELMQGEIGMESA 697


>gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 830

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL     A   A+E K+ F+  +S+ELR+P+  ++G   LL    +G L  + S+YVE I
Sbjct: 294 ALETARHAADAANEAKSRFLATMSHELRTPMNGVLGMAGLLL--DMG-LAPEPSEYVETI 350

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            +S   LL ++NDILD + ++AG+ +L      L   + E    +A    +  + + + I
Sbjct: 351 RSSGDALLAIINDILDFSKLEAGMFELELQPFSLRSCVEEAFDLVAVSAAKKRLELALRI 410

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKN 725
           ++    +   D  RL Q+   +LSNA+ F+  G  VI  A     D          SV++
Sbjct: 411 AEDVPWTVRGDITRLRQVIVNLLSNAIKFTDVGEVVIAIACAPKIDCQRAGVRLHLSVRD 470

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  IP ++ KS+F  F        R+  G GLGL+I    + L  G + + S
Sbjct: 471 TGVGIPAELHKSLFRSFSQLDASISRKYGGTGLGLAICARLVALMDGRIWVES 523


>gi|158338978|ref|YP_001520155.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
 gi|158309219|gb|ABW30836.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
          Length = 811

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 120/247 (48%), Gaps = 6/247 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++  +AE+ L   N  L ++++    F    S++L+ PL  I  FTDLL     G L+
Sbjct: 569 DISERKQAEQELQRINSELIRSNQELGHFAYVASHDLQEPLRKIGSFTDLLADRYQGQLD 628

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               +Y+ YI+  +  +  L++D+L+ + V  G  +L      L+ +L +VK  +   + 
Sbjct: 629 ETADRYIRYITDGAMRMQGLIDDLLNYSRV--GRAELKVQPTALSSILEKVKSDLEKVIE 686

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFS 722
           +  + I + S   L +   D   + Q+F  ++SNA+ +  +    + ++A +D   +  S
Sbjct: 687 KRQVEIIIDS---LPTVAVDPVLMGQVFQNLISNAIKYCQADRPRIYIRATQDQKFWTIS 743

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++NG  I       +F  F    HR +  G G+GL+I +  +  HGG + + S +    
Sbjct: 744 VQDNGIGINPQFTDRIFVIFQRLHHREEYSGTGIGLAICKKLVERHGGQIWVDSEEGKGA 803

Query: 783 TINCRIP 789
             +  +P
Sbjct: 804 NFSFTLP 810


>gi|153834480|ref|ZP_01987147.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi
           HY01]
 gi|148869116|gb|EDL68152.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi
           HY01]
          Length = 786

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+   L  +Q ++
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ---LTEEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L   +  D  RL Q+   ++SNAM F+ +G  V+  +A    D+   I  V++
Sbjct: 381 DLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEDDYATIIMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IP++    +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-ASEEGFG 499

Query: 783 ---TINCRIP 789
              T++  +P
Sbjct: 500 STFTVSIHVP 509


>gi|88658417|ref|YP_507680.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599874|gb|ABD45343.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas]
          Length = 470

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
           A   L E  E   + +  K+ F+ +VS+ELR+PL +IIGF++++K   +G++ N    +Y
Sbjct: 217 ANLKLKEAKEVAEQENVSKSQFLANVSHELRTPLNSIIGFSEMMKAESMGAIENVHYKEY 276

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +   LL+L+NDILD +  +A  + + +    L  +++     I  +  E  +R+
Sbjct: 277 INDIHNAGVHLLSLINDILDFSKAEADKLVVEFVKFDLGKVISSCFNMILPRAEEAKVRL 336

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNG 727
           + +        VAD +R+ Q+   +LSN++ F+ +   V L    D  N   +  V +NG
Sbjct: 337 EQVLPSNQIIMVADPKRMKQVIINLLSNSIKFTPENGCVKLVVEYDLENSMIVIEVIDNG 396

Query: 728 SSIP-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             I  +D+ K  SVF + V + H  +  G GLGL + +  + L  G   I S     T +
Sbjct: 397 IGIAQQDLYKVMSVFGQ-VDSRHARKYEGTGLGLPLSKKLVELMDGVFKIKSEPNLGTIV 455

Query: 785 NCRIP 789
               P
Sbjct: 456 TLMFP 460


>gi|326478067|gb|EGE02077.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97]
          Length = 2408

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 21/250 (8%)

Query: 550  RAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +A+ A  E N  ++    A + K+ F+ ++S++LR+P+T +IG ++LLK +KL   + KQ
Sbjct: 1864 KAKVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQ 1920

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              YVE I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     E  
Sbjct: 1921 DVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG 1980

Query: 667  IR----IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
            +     +  I    L   + D  RL QIF  +LSN+  F+  GS  +     ++      
Sbjct: 1981 LETVEDLDSIDPDLL--VMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIR 2038

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSI 774
                V + G  I E+    +F  F S A     R   G GLGLSI ++ I ++ GG + +
Sbjct: 2039 VTCKVADTGIGISEEQLVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWL 2097

Query: 775  SSSDEGVTTI 784
             S +   TT+
Sbjct: 2098 QSKEGEGTTV 2107


>gi|163746891|ref|ZP_02154248.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161380005|gb|EDQ04417.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 502

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 15/236 (6%)

Query: 553 RALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L   NE L+ A       D+ K+ F+  VS+ELR+PLT+I G  ++LK+ K+  L+  
Sbjct: 243 RRLKHNNEQLKHAQIRAMASDKSKSEFISTVSHELRTPLTSIKGSLEMLKSGKIIDLSGA 302

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHE 664
             + V   + ++ IL  LVND+LD   +D G +++   T   +D++  VK  I T K ++
Sbjct: 303 AERLVGMAAKNANILNLLVNDLLDFERIDTGNLEV---TKRPSDIVGIVKDEIETMKSYD 359

Query: 665 NNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               ++    G  G  VA  D  R+ QI   +LSNA+ FS KG  +++   ++       
Sbjct: 360 TEQEVEYFYSGVEGPLVAHVDPDRIAQIVRNLLSNAVKFSPKGGKIVVSVRKEAQSVRVD 419

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V ++G  I +  C  +F++F  V +++  + RG GLGL+I +  +  HGG + ++S
Sbjct: 420 VADSGCGISKVDCVRIFDKFTQVDSSNTRKHRGTGLGLAISKGIVEAHGGDIGVTS 475


>gi|153873243|ref|ZP_02001890.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152070291|gb|EDN68110.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 716

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 50/266 (18%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+PL +++    LL ++K G+L  KQ++Y + I ++ + LL L+N+ILDL+ ++A
Sbjct: 1   MSHELRTPLNSLLILAQLLASNKEGNLTDKQTEYAQTIHSAGSDLLTLINEILDLSKIEA 60

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694
           G +++    + L DL   V Q       E  +   +     L   +  D QRL QI + +
Sbjct: 61  GKIEVQVEKVSLADLQEAVDQKFRHVAEEKKLAFPISMADDLSPVINTDGQRLKQILNNL 120

Query: 695 LSNAMDFSSKGSTVI-----------LKAARDNG-----------DFI------------ 720
           LSNA  F+S+G   +           L A    G            FI            
Sbjct: 121 LSNAFKFTSQGEVRLEIQPTGPHPSPLPAGEGTGPHPSPLRENLSPFILENSQGHPPLPL 180

Query: 721 -------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
                        FSV + G  IP++  + +F  F        RR  G GLGLSI     
Sbjct: 181 GEGRGEGHQKTIAFSVTDTGVGIPKNKQQVIFEAFQQADGTTSRRFGGTGLGLSISRQLA 240

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L GG + + S +   +T    +P K
Sbjct: 241 RLLGGELHLQSEEGKGSTFTLYLPEK 266


>gi|153808319|ref|ZP_01960987.1| hypothetical protein BACCAC_02612 [Bacteroides caccae ATCC 43185]
 gi|149129222|gb|EDM20438.1| hypothetical protein BACCAC_02612 [Bacteroides caccae ATCC 43185]
          Length = 482

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 118/215 (54%), Gaps = 2/215 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D  K +F+  +S+EL++P+  I+    LL+  ++G+LN +Q Q  + I  +S  LL 
Sbjct: 255 KELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLLG 314

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           +  ++L++  V+AG ++L        +L+    ++   +  + NI+I+V   + K+G   
Sbjct: 315 ITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIGKLF 374

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +++  + + +LSNA+ +S +   V++ A +++      V++ G  I     KS+F+R
Sbjct: 375 VDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKQEDNIIELYVQDFGKGIDPRYHKSIFDR 434

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +       + +G GLGLSI   F+  HGG +++ S
Sbjct: 435 YF-RVPGTKVQGSGLGLSISRDFVEAHGGTLTVES 468


>gi|320162521|ref|YP_004175746.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319996375|dbj|BAJ65146.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1314

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 161/381 (42%), Gaps = 58/381 (15%)

Query: 415  MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL-------- 466
            M E  T Q+  E +    V      +D   EG+ V  P G     NPAF S+        
Sbjct: 954  MVEERTAQLRAEKERTQAV------LDAAGEGIFVLDPQGAFLYCNPAFESITGYSLVEL 1007

Query: 467  -----WK-TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                 W+  +EN  +     +N     +R+  E  GW    A                  
Sbjct: 1008 QVGSPWRWLDENEGNLFKTYQNREILSTRWEKEIHGWRRNGAPF---------------- 1051

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
              D++L  ++ P+ +        NV   V   + +T     L++ D +K+ FV +VS+EL
Sbjct: 1052 --DAIL--TLTPVHDEDG-----NVIKHVGTLQDITR----LKELDRLKSQFVSNVSHEL 1098

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+PLT+I  + + L T+       + ++Y+  +   +  L  +V D+L ++ +D G  ++
Sbjct: 1099 RTPLTSIKLYAEQLPTAS----AERSARYLAALQRETARLEAMVEDLLTISRLDLGKTRI 1154

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              S + L   + ++ +      H   + +    D  L     D + ++QI + +L+NA++
Sbjct: 1155 QISALPLAPFVQQIVEDRRMLAHSRGLTLHFQQDKHLPPVAGDERFVMQIVTNLLTNAIN 1214

Query: 701  FSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVG 755
            ++  G  + +    D    G    ++++ G  IP +    +F RF   S   + Q  G G
Sbjct: 1215 YTPAGRNIFISVRHDPQEAGFLRLTIEDEGVGIPPEEMPHLFERFFRGSAGRKLQVPGTG 1274

Query: 756  LGLSIVESFINLHGGHVSISS 776
            LGL+IV+  +    G + I S
Sbjct: 1275 LGLAIVKEMVERLNGKIHIES 1295


>gi|298244388|ref|ZP_06968194.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297551869|gb|EFH85734.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1349

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 5/233 (2%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N A ++ ++ K+ F+   S+ELR+PL  +   T L++         + +  +  +     
Sbjct: 1115 NSARKELEQRKDDFISMASHELRNPLAALKMQTQLVQKRLERQSLHEAATALSRVEGPVK 1174

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      +   I  +      
Sbjct: 1175 QLERLIGELLDVSKIQAGKLEYVRETVDLDALLHEVADTM---QQLSTTHIIAVRGAVPH 1231

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            S V D+ RL Q+F  ++SNA+ +S    TV +         I  V ++G  IP + C  +
Sbjct: 1232 SLVGDKDRLGQVFINLISNAIKYSPGAETVEMDLDASPEAAIIGVHDHGLGIPREQCDKI 1291

Query: 739  FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F RF   A   Q+   G+G+GL IV   +  HGG +++ S+    +T    +P
Sbjct: 1292 FERFYRAAGPKQKAIPGLGMGLYIVAEIVKRHGGTITVDSTVGEGSTFTVTLP 1344


>gi|260846023|ref|YP_003223801.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
 gi|257761170|dbj|BAI32667.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
          Length = 778

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 131/248 (52%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +  
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLCF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
             IP+D    +F  +  V ++H G+   G G+GL++        GG ++++S   +G T 
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTF 499

Query: 783 TINCRIPS 790
           T+    PS
Sbjct: 500 TLTIHAPS 507


>gi|229127230|ref|ZP_04256227.1| hypothetical protein bcere0015_16840 [Bacillus cereus BDRD-Cer4]
 gi|228656346|gb|EEL12187.1| hypothetical protein bcere0015_16840 [Bacillus cereus BDRD-Cer4]
          Length = 329

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 130/245 (53%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 83  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 141

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+   + +  L+ ++      ++ + N+  
Sbjct: 142 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 201

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + SD  L   V D   ++++F  ++ N++ +   G  + ++ +    +    +KN G  
Sbjct: 202 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 260

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S   LH G +++ S+D+  T  
Sbjct: 261 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGMGLAISKSIAQLHQGDITVRSNDKE-TVF 316

Query: 785 NCRIP 789
             ++P
Sbjct: 317 TVKLP 321


>gi|153854057|ref|ZP_01995390.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814]
 gi|149753439|gb|EDM63370.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814]
          Length = 470

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 124/233 (53%), Gaps = 7/233 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L   +  LR  ++ +  FV +VS++ RSPLT+I G+ + +    +        +Y++ I
Sbjct: 231 SLNYMSSQLRDMEDYQKKFVANVSHDFRSPLTSIKGYVEAMTDGTIPP--ELHEKYLKII 288

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L +L  D+L L   D   + LN     +++++  V  S      +  I I+++ 
Sbjct: 289 LFETERLTDLTQDLLTLNEFDTNHLLLNREVFDIHEMIKHVAASFEGVCTQKKISIELVF 348

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPE 732
             K  +  AD++++ Q+   +L NA+ FS   S V ++   D G+ ++ SVK+NG  IP 
Sbjct: 349 ATKHLNVNADKRKIQQVLYNLLDNAIKFSDPNSIVTIETT-DRGEKVYTSVKDNGMGIPR 407

Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
                ++ RF  S+  RG+ ++G GLGL+IV+  I  HG ++++ S+ EGV T
Sbjct: 408 SALGKIWERFYKSDLSRGKDKKGTGLGLAIVKEAIQAHGENITVVST-EGVGT 459


>gi|126651422|ref|ZP_01723626.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126591675|gb|EAZ85771.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 466

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 5/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+  +++ELR+P+T I G+TD+L    L S+  +Q +Y+  I   +  L  L+ D+ 
Sbjct: 234 RKEFLSSIAHELRTPITFIKGYTDILYKRDL-SVQDRQ-KYLAIILEETNRLSRLIKDLF 291

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +D     +    + L      +K  ++    E +I   V  +  L +  AD  RL 
Sbjct: 292 DLAKMDENSFVIEKQNLDLQAFFTGIKGKLSPAFQEKDIHFDVCCEKGL-TLWADEARLE 350

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           QI   +L+NA+ +  +G T  +   + NG     +++ G  IP      +F RF  V  +
Sbjct: 351 QIIINLLNNALTYCGQGDTTTVDVKKVNGVLTIIIRDTGRGIPNKDLPFIFERFYRVEKS 410

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 G GLGL+IV+  +  HGG V++ S
Sbjct: 411 RSRALGGTGLGLAIVKELVQAHGGEVTVKS 440


>gi|22095654|sp|O49187|ETR2_SOLLC RecName: Full=Ethylene receptor 2; Short=LeETR2
 gi|2852993|gb|AAC02214.1| ethylene receptor homolog [Solanum lycopersicum]
          Length = 736

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  ++  + LL+ S+L
Sbjct: 313 ESMRARDLLIEQNVALDLARREAETAVRARNDFLGVMNHEMRTPMHAVVALSSLLQESEL 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  EV   I 
Sbjct: 373 ---IPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHALFREVLNLIK 429

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                  + + + +S       + D +RL+QI   ++ NA+ FS +GS  +      +  
Sbjct: 430 PVAAVKKLFVTLSLSSDFPEVAIGDEKRLMQILLNVVGNAVKFSKEGSVSVSAVNAKSES 489

Query: 719 FI-------------------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            I                     VK+ GS I P+D  K +F +F  N     +   G GL
Sbjct: 490 LIDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDFPK-LFCKFAQNQEPATKNSAGTGL 548

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 549 GLAICKRFVNLMEGHIWIESEGVG 572


>gi|332710709|ref|ZP_08430650.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332350486|gb|EGJ30085.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 480

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 22/275 (8%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-----ERALTEKNEALRKA 565
           ++SLQ  L+L+S      S   L + Q  L   N    VR      +  L   NEAL   
Sbjct: 203 KRSLQ-PLQLMSQLTESISADDLGDVQIQLD--NAPTEVRELAQTFDEMLVRLNEAL--- 256

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLV 624
            E +  FV +VS+ELR+PLT + G+     T + G+ L+  Q + +E  S+ +   + ++
Sbjct: 257 -ENQRQFVSNVSHELRTPLTLVSGYVQ--STLRRGANLSPPQREALEIASSEADRTVQML 313

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
            D+LDLA  D+G +  N  + VL++L+ EV + +A +  +  I+++ I   K G +V  D
Sbjct: 314 QDLLDLARADSGHIHFNLESFVLDELVEEVAE-MARQYTKRVIKVECI---KPGIWVKGD 369

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
             RL Q+   ++ NA+ +SS    V +K  + +G     V + G  IP      +F+RF 
Sbjct: 370 INRLKQVLLNLIDNAVKYSSVDKPVTVKLTQVDGRGRIEVCDRGIGIPLKQQARIFDRFY 429

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V         G GLGLSIV++ +   GG V + S
Sbjct: 430 RVDETRTRSTGGAGLGLSIVKTLVEGMGGSVKVRS 464


>gi|162450584|ref|YP_001612951.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161161166|emb|CAN92471.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 414

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 20/239 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGS----LNSKQSQY 609
           L  KN  L + +E KN FV   +++LR+PL  I+G++D +L + + G     L     + 
Sbjct: 155 LAAKNAELVRLNEEKNRFVGMAAHDLRNPLGVILGYSDFMLMSHRRGEPSSLLKEGGVEI 214

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM---HENN 666
           V  I +SS  +L+L+ND+LD++ ++ G + L+  +    D++  V+ ++A  M    + N
Sbjct: 215 VNMIRSSSKFMLSLINDLLDVSMIELGKLNLDRKS---TDIVQLVESNVALNMVLAGQKN 271

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDNGDF 719
           +++ V SD  +     D  +L Q+ + ++SNA+ +S  G+T+ ++        A    + 
Sbjct: 272 MKLVVESDEGVPRVEVDAHKLEQVLNNLISNAIHYSPPGTTIRVRVHGGRGEDAGGGAEV 331

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I SVK+ G  I  +    +F  F        G  R  GLGL+I +  +  HGG + + S
Sbjct: 332 ILSVKDEGPGIAAEDLGKLFRPFGRARTVSTGGERSTGLGLAIAQRVVEGHGGRIWVES 390


>gi|157148541|ref|YP_001455860.1| hypothetical protein CKO_04368 [Citrobacter koseri ATCC BAA-895]
 gi|157085746|gb|ABV15424.1| hypothetical protein CKO_04368 [Citrobacter koseri ATCC BAA-895]
          Length = 1060

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 122/243 (50%), Gaps = 7/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R++R L  +    ++A+E K  F+ H+S+E+R+P++ I+GF +LL+ S     + +    
Sbjct: 567 RSQRLLEAERNKAQQANEEKREFLSHMSHEIRTPVSAIMGFLELLQLSP-ARFSPEDKAS 625

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+  + +S  LL L+ +ILDL  +++G++      + ++ L+ E     +    +  I +
Sbjct: 626 VDQAAQASRSLLKLIGEILDLEKIESGLLDTVPQWVNVDALIKEKMTLFSALAAQKGIDL 685

Query: 670 KVISDGKLGSFVA---DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +   D +L    A   D Q L Q+ + ++ NA+ F+ +G  V + A + N     SV ++
Sbjct: 686 RY--DSRLDPQEAMHLDPQLLGQVLTNLIGNAVKFTQQGH-VRISATKSNAMLALSVSDS 742

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I  +    +F  F         RG GLGL+I  + +   GG +++ S     TT+  
Sbjct: 743 GPGISTEEQNRLFTAFSQGKAGKHHRGSGLGLAISRALMTQMGGTIALQSEINRGTTLTL 802

Query: 787 RIP 789
            +P
Sbjct: 803 NLP 805


>gi|149915177|ref|ZP_01903705.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
 gi|149810898|gb|EDM70737.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
          Length = 851

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 171/366 (46%), Gaps = 52/366 (14%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL------SPGTHIRNIAA 485
           +V+  G  I+  +   ++FGPD      +  +  L++ EE+R        P   +R    
Sbjct: 239 VVRPDGTIIETNTAARSMFGPDNTETGKSNIYGVLYRQEEDRTLTAISDEPLGDVRE--- 295

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFV 543
                  E+D   L A          +   G+L    LS +V   S+      +  + F+
Sbjct: 296 ------GEADSTPLVA----------RRQDGSLAAVELSANVAARSV-----DEVWVCFI 334

Query: 544 -NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D + AE  +    +     ++ K  F+  +S+E+R+PL  I+G  DL+ ++    L
Sbjct: 335 RDISDRLAAEAEVQAARDKALSNEKAKAHFLGRISHEMRTPLHGILGTLDLMDSTP---L 391

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIAT 660
           + +Q++Y + + +S  +LLN +ND LD+    A  + L  +   +  L+ ++   Q    
Sbjct: 392 SPEQTRYSDIMKSSGQVLLNQINDALDITRSSAEPLPLVETVFDVEQLIEDIATSQGAVA 451

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DN 716
           + H N I + V  +  +G+ + DR R+ Q+   ++SNA+ F+  G  + ++AAR      
Sbjct: 452 EAHGNTIDLHV-QNAPVGAVLGDRDRVQQVLLNLVSNAIKFTRNGR-ISIEAARVGLHGK 509

Query: 717 GDFIFSVK--NNGSSIPEDMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGG 770
            D IF ++  + G  I ED  + +F+ FV    S+  R +  G GLGL I  + +   GG
Sbjct: 510 HDNIFEIQVSDTGIGIAEDDVERIFDDFVRVISSDGERTE--GTGLGLGIARNLVLQMGG 567

Query: 771 HVSISS 776
            + + S
Sbjct: 568 DIGVES 573


>gi|1272246|gb|AAB39386.1| ethylene receptor [Solanum lycopersicum]
          Length = 706

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  ++  + LL+ S+L
Sbjct: 283 ESMRARDLLIEQNVALDLARREAETAVRARNDFLGVMNHEMRTPMHAVVALSSLLQESEL 342

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  EV   I 
Sbjct: 343 ---IPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVGTFNLHALFREVLNLIK 399

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                  + + + +S       + D +RL+QI   ++ NA+ FS +GS  +      +  
Sbjct: 400 PVAAVKKLFVTLSLSSDFPEVAIGDEKRLMQILLNVVGNAVKFSEEGSVSVSAVNAKSES 459

Query: 719 FI-------------------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            I                     VK+ GS I P+D  K +F +F  N     +   G GL
Sbjct: 460 LIDPRAPEFFPVQSENHFYLRVQVKDTGSGINPQDFPK-LFCKFAQNQEPATKNSAGTGL 518

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 519 GLAICKRFVNLMEGHIWIESEGVG 542


>gi|237746159|ref|ZP_04576639.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229377510|gb|EEO27601.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 1090

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 133/277 (48%), Gaps = 23/277 (8%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEK--NEAL---RKADEIKNSFVQHVSYELRSPLTN 586
           P  +    +  + V D  R E+ L E+    AL   + A++ K+ F   +S+++R+P+  
Sbjct: 534 PYSDEVLCILLLKVLDDQRTEKMLQEQVLRNALASAKAANQAKSDFFSRMSHDIRTPMNA 593

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNY 642
           IIG       S +G L   + + V      I  SS  LL+L+NDILD++ +++G M L  
Sbjct: 594 IIGM------SAIGQLKMNEPERVRECFSKIDVSSRYLLSLINDILDMSKIESGKMILTN 647

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDF 701
           +    + L++++   I  +  EN +  ++   G L  F + D  R+ QI   +LSNA+ F
Sbjct: 648 ARFDFSGLISQINTIIYPQALENRLSCRIHHVGVLERFYIGDALRINQILMNLLSNALKF 707

Query: 702 SSKGSTVIL---KAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           +  G  + L   ++ R NG  ++ F + + G  +  +  K ++  F        R   G 
Sbjct: 708 TPAGGKIDLDIGESRRANGFAYVQFRISDTGIGMSPEFMKRLYVPFEQETTDIARNKIGS 767

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGLSIV S + L GG + + S     T     +P K
Sbjct: 768 GLGLSIVHSMVQLMGGTIEVQSEKNRGTVFTVTLPLK 804


>gi|229090039|ref|ZP_04221290.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42]
 gi|228693269|gb|EEL46979.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42]
          Length = 709

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 295 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 354

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V  S
Sbjct: 355 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVENS 414

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 415 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKDWITI 474

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 475 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 534

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 535 EGSTFTVYIPN 545


>gi|157374126|ref|YP_001472726.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157316500|gb|ABV35598.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 938

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 127/253 (50%), Gaps = 26/253 (10%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           VRAERA           ++ K+ F+  +S+ELR+P+  +IG  DLL  SK    N +   
Sbjct: 396 VRAERA-----------NQAKSEFLSMMSHELRTPMNAVIGSLDLLTLSKQ---NPESMS 441

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E  + S+T L+ ++NDILD+  +++G M+L      + ++++ V Q      H+  + 
Sbjct: 442 LIETATTSATNLIYILNDILDINKIESGKMQLEQRDFSITEVIDNVVQVFLPLAHKKRLN 501

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS-----SKGSTVILKAARDNGDFI-- 720
           + +  D ++   +  D  ++ QI   +L NA+ F+       G   ++    ++ D I  
Sbjct: 502 LHIYEDPQIPKLLEGDAVKVRQILFNLLGNAIKFTHTVEGKPGEIRLITNISEHNDIIYK 561

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FS+ +NG  I ++  K +F  F+       R+  G GLGL+I  +  ++ GG + ++S
Sbjct: 562 ISFSIIDNGIGIDKETQKKLFTPFMQAQRSTTRKYGGTGLGLAISGNLTSMMGGEIKLNS 621

Query: 777 SDEGVTTINCRIP 789
           + E  +T    +P
Sbjct: 622 TPEQGSTFTVVLP 634


>gi|148977367|ref|ZP_01813967.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3]
 gi|145963319|gb|EDK28584.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3]
          Length = 1424

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 134/258 (51%), Gaps = 14/258 (5%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
               ++T+  + +  LT+  ++   A E K+ F+ ++S+E+R+PL  I+   +L +  ++G
Sbjct: 775  VLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVG 834

Query: 601  SLNSKQSQYVEY-ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 + Q +   +S S+  LL++VNDILD + ++AG + L+Y    L+ L   V Q  A
Sbjct: 835  ----HEVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQA 890

Query: 660  TKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARD 715
             + H   ++ K   D +L  S + D  RL Q+ + +LSNA+ F+  G+   T  L +  D
Sbjct: 891  RQAHAKGLQFKFWLDPELKDSVLMDDIRLGQVLNNLLSNAIKFTEHGTVGLTTKLVSQND 950

Query: 716  NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
                + F V ++G  I E+  +++F  FV  A  G  R   G GLGL+I +  I   GG 
Sbjct: 951  GQQQVCFEVFDSGIGISEEHIRNLFRPFV-QADEGTTRKYGGSGLGLTISKQLIEQMGGT 1009

Query: 772  VSISSSDEGVTTINCRIP 789
            +++ S     +T    +P
Sbjct: 1010 LNVISKVNLGSTFTISVP 1027


>gi|50122492|ref|YP_051659.1| hybrid sensory histidine kinase BarA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613018|emb|CAG76469.1| two-component sensor kinase and response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 933

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     LN+ Q+ Y+  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L+  L++V   +A   HE  + + + I +     F
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + +L NA+ F+ +G+  I    R            +++ G  I E    
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 504


>gi|332306753|ref|YP_004434604.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174082|gb|AEE23336.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 661

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 4/240 (1%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            ++++D   AE  L+  N+ L  AD  K+ F+  + +ELR+PL  I    ++++  +   
Sbjct: 262 IMDISDRKAAEEQLSALNQQLSIADRRKDEFLATLGHELRNPLAPICNVLEIMRAKETDD 321

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                S+  + I    + L +LV+D+L+ + +  G + L    I ++D +    +S+   
Sbjct: 322 TFMHWSR--DMIERHVSQLTHLVDDLLEASRISQGRLSLRTEPINIDDAVQNAVESVQDL 379

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           M  +   + V          AD  R+ QI   +L+NA  ++ KG  ++L   +   + I 
Sbjct: 380 MKSSEHNLTVNKPQHPIIIDADATRITQIIVNLLTNAGKYTPKGGDILLNVFKQENEAIV 439

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  IP +   +VFN F  ++ A    + G+G+GLS+V   + LHGG++   S  E
Sbjct: 440 SVKDTGIGIPAEQLTNVFNMFSQLTPALDRAQGGLGIGLSLVHGLVKLHGGNIVALSDGE 499


>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
 gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
          Length = 2059

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 10/224 (4%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E    A   K+ F+ ++S+E+R+P+  IIG TDL   ++L    ++Q +Y+  + +S+  
Sbjct: 1347 ETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL---TAEQREYLTMVQSSAGS 1403

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
            LL ++NDILD + ++AG ++L+ S   L   L +  +++A + H+  + +   I+     
Sbjct: 1404 LLTIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKTLAWRAHQKGLELVCDIASDIPD 1463

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD-NGDFI--FSVKNNGSSIPEDM 734
            S V D  RL QI + ++ NA+ F+S+G   +++K  +  +G+ +  FSV ++G  IP++ 
Sbjct: 1464 SLVGDPGRLRQIVTNLVGNAIKFTSEGEVDLVVKIDKYIDGEVLLRFSVIDSGIGIPKEK 1523

Query: 735  CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F  F        RR  G GLGL+I    + L  G + + S
Sbjct: 1524 LHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLRVVS 1567


>gi|298251422|ref|ZP_06975225.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546014|gb|EFH79882.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 485

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 17/241 (7%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+ELRSPLT +      L+T  +     K SQ+ E  +A S 
Sbjct: 251 NSARKELEQRKDDFINMASHELRSPLTVV-----KLQTQLVHKRLEKHSQH-EAATALSR 304

Query: 619 I------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L  L+ ++LD++ + AG +K     + L+ LL E+  ++      + I ++  
Sbjct: 305 VEMPIKQLERLIAELLDVSQIQAGRLKYIRERVDLDKLLREIADTMQRMSPSHTIAVR-- 362

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                 S + DR RL Q+F+ +LSNA+ +S   +TV ++ +         V+++G  IP 
Sbjct: 363 -GAVQTSVIGDRDRLRQVFTNLLSNAIKYSPDATTVEVELSSSEEAVAIRVQDHGLGIPR 421

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  K +F RF   A        G+G+GL IV   I  HGG +++ S     +T    +P 
Sbjct: 422 EQHKKIFERFYRAAGLSHETIPGLGMGLYIVAEIIKGHGGTITVESDIGKGSTFTVTLPR 481

Query: 791 K 791
           +
Sbjct: 482 R 482


>gi|209694498|ref|YP_002262426.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio
           salmonicida LFI1238]
 gi|208008449|emb|CAQ78615.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio
           salmonicida LFI1238]
          Length = 745

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 9/247 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           + A+    +   A  K   +K+ F+  +S+E+R+PL  I+G + LLK ++L     KQ  
Sbjct: 353 IEAKEESHKAQAAAEKLTLVKSDFLARMSHEIRTPLNGILGISGLLKQAQLPLEQKKQ-- 410

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I      LL ++NDILD + ++   + +N+   VL+D+L+ +         E NI 
Sbjct: 411 -IQIIHQGGEHLLAVLNDILDFSQIEQDKLNINFEEFVLDDVLDTINAIYTPLCMEKNIT 469

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI--FSVK 724
             + ++      +  D+ RL QI   +LSN + F+  G  T+ L     NG     F V+
Sbjct: 470 FNLNNNIDNNVILYTDKVRLTQILFNLLSNGVKFTEIGQVTLSLNLESKNGQIFLCFDVE 529

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  +   SVF+ F+     G R+  G GLGL+IV+  ++L  G +++ SS    T
Sbjct: 530 DTGVGIDIENQASVFDPFIQVESTGTRKFGGSGLGLAIVKQLLHLLNGSITVVSSPGLGT 589

Query: 783 TINCRIP 789
           +   R+P
Sbjct: 590 SFTIRLP 596


>gi|167738963|ref|ZP_02411737.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 14]
          Length = 341

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  + + V  D  RL QI   ++ N + ++ +G   +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|163792987|ref|ZP_02186963.1| sensor/response regulator hybrid [alpha proteobacterium BAL199]
 gi|159181633|gb|EDP66145.1| sensor/response regulator hybrid [alpha proteobacterium BAL199]
          Length = 528

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 5/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613
           L E    L  A+  K+ F+ ++S+ELR+PL  IIGF+D++     G L +++   Y + I
Sbjct: 269 LQESKSELESANRFKSEFLANMSHELRTPLNAIIGFSDIMVNQLFGKLGDARYEDYAKDI 328

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L+ ++ DILD   ++ G ++L  +T+ ++ LL +  + I+  +H   I+++  +
Sbjct: 329 HYSANHLIEIIGDILDTTRIEFGKLELQEATVSVDGLLEDALRIISPSIHAQRIKLEQQA 388

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               G     D  R+ QI   +LSNA+ F+  G  + +     +G  I ++ + G  I E
Sbjct: 389 LPLPGPKLRCDPIRVRQILINLLSNAVKFTDPGGAISIGVKIRDGIEI-TITDTGIGIDE 447

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              + V   F    H   R+  G GLGLS+ ++ +  H G +++SS     T +    P+
Sbjct: 448 ADLERVVTPFAQVEHAFARKYQGTGLGLSLSKTLMECHQGKLTLSSRLGEGTAVTIYFPA 507


>gi|15894190|ref|NP_347539.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023801|gb|AAK78879.1|AE007605_12 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325508318|gb|ADZ19954.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 683

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 123/235 (52%), Gaps = 11/235 (4%)

Query: 553 RALTEK--NEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           R +TEK  NEA RK        D+++  F  ++S+ELR+PL  +     L++ +      
Sbjct: 406 RDMTEKKKNEANRKKLEQTLYYDKVRKEFFSNLSHELRTPLNILASAMQLVRLNMDNDNK 465

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               +Y++ ++ +   L  ++++++D+  +DAG + ++  T+ +  ++ ++  S+   + 
Sbjct: 466 DGFEKYLKIMNQNIYRLTKIIDNLIDITKIDAGYLSVDLHTVEIVSVIEDITMSVIEFVK 525

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              I I   +D +      D  ++ ++   +LSNA+ F+ KG  + +     N      V
Sbjct: 526 SKGIDIVFDTDVEEKFMPVDSDKIERVMLNLLSNAVKFTPKGGKITVNVYDKNDSIQIRV 585

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           K+ G  IP+DM +++F RF  V+     ++ G G+GLSIV+S I +HGG + + S
Sbjct: 586 KDTGIGIPKDMKETIFQRFIQVNKTLIREKEGSGIGLSIVKSLIEMHGGQIRVES 640


>gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 693

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 7/237 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T   +    L E  +    A+  K+ F+  +S+E+R+PL  ++G  D L  S    L 
Sbjct: 304 NITARKKRLFDLQEARKQAESANSAKSQFLAMMSHEIRTPLNAVLGLMDTLADS---GLR 360

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V+ +  S+ +LL ++NDILDL+ +++G  +L    + + D +N V   ++ +  
Sbjct: 361 QEQMEWVKQMDQSAQLLLTIINDILDLSKIESGNFELTNGEMSITDCINLVVNQLSEQAR 420

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             NI ++   D  + S +  D+ R+ QI   ++ NA+ F+S GS  +L A R   +   S
Sbjct: 421 NKNILLQAEIDQTVPSVICGDKNRIAQIMFNLIGNAIKFTSTGSVRVL-ARRVEDNIEIS 479

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           V + G  I +    ++F+ F        R+  G GLGL+I +  I+   G + + SS
Sbjct: 480 VIDTGIGIAKQAQNNLFHPFHQADSSITRKYGGTGLGLAISKHLISKMNGKIELDSS 536


>gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 1238

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  ++G T+LL+ ++L    +KQ  +V+ +  S   LL +++DIL
Sbjct: 562 KSEFLARMSHEIRTPMNGVLGMTELLQRTRL---TAKQRSFVDTVYRSGQTLLTIIDDIL 618

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++AG + L      L  LL++V   +        + ++      +  +V  D  RL
Sbjct: 619 DFSKIEAGKLMLERIEFNLYQLLDDVVSLLEPTAARKGLALRFRRQDPVPEWVRGDPVRL 678

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI + ++ NA+ F+ +G   +  A  D+G  +F++ ++G  I  D+   +F  F     
Sbjct: 679 RQILTNLVGNAIKFTERGQVELAVAYSDHGLVVFTIADSGIGIAPDVSAQLFKPFQQADS 738

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSD--EGVTTINCRI 788
              R+  G GLGL I      + GG +++ S+     V T+  R+
Sbjct: 739 STARKYGGTGLGLVISRQLAEMMGGTLTVESAPGRGSVFTVTARL 783


>gi|160943149|ref|ZP_02090386.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445618|gb|EDP22621.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii
           M21/2]
          Length = 752

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 128/235 (54%), Gaps = 9/235 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA+ A  E  ++  +A + K  F+ ++S+++R+P+  IIG T L+K         K +++
Sbjct: 352 RAQDAAAEALQSAERASKAKTDFLSNMSHDIRTPMNAIIGITALMKNELHEP--EKLAEH 409

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  + +S  +LL ++N+ILD++ +++G   L+   + L   ++++   I  +  + +   
Sbjct: 410 LGKLESSGQLLLGIINNILDMSRIESGKTTLHVEKMNLPQQISQLDSIIRQQAGQRSQSF 469

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDN--GDFIFSVK 724
            V ++ +  + +AD  RL Q+   ILSNA+ ++  G  + L+     R+     + F V+
Sbjct: 470 TVSTNLQHENVLADPNRLNQVLMNILSNAVKYTPTGGHIRLEVEELPRNEHYARYRFVVQ 529

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           ++G  +  D  K++F+ F      G  +  G GLG++I +S I+L GG +S+ S+
Sbjct: 530 DDGIGMSADYQKTLFDPFTREERSGTNKVQGTGLGMAITKSVIDLMGGSISVESA 584


>gi|297807105|ref|XP_002871436.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317273|gb|EFH47695.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 923

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 141/284 (49%), Gaps = 47/284 (16%)

Query: 543 VNVTDSV--RAERALTEKNEALRKADEIKNSFVQHV--------------SYELRSPLTN 586
           + VT+ V  R + A   ++ A+RKA E + +   H+              S+E+RSPL+ 
Sbjct: 326 MEVTEQVDKREKMAKLREDNAVRKAMESELNKTIHITEETMRAKQMLATMSHEIRSPLSG 385

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G  ++L T++L   + +Q Q +  + +S  ++L L+NDILDL+ V++G+MKL  +   
Sbjct: 386 VVGMAEILSTTRL---DKEQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFR 442

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +++  V Q+ A  + ++      I+D      V D  R+ QI + ++SNA+ F+ +G+
Sbjct: 443 PREVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGDVLRIRQILTNLISNAIKFTHEGN 502

Query: 707 TVI-------LKAARDN---GD---------------FIFSVKNNGSSIPEDMCKSVFNR 741
             I          ARDN    D                   V + G  IPE+    +F +
Sbjct: 503 VGIKLQVISEPSFARDNTLTADTEEQEQNGLTETSVWICCDVWDTGIGIPENAIPCLFKK 562

Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           ++  S  H  +  G GLGL+I +  + L GG ++++S  +EG T
Sbjct: 563 YMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVNEGST 606


>gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 918

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|239626587|ref|ZP_04669618.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516733|gb|EEQ56599.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 497

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 121/230 (52%), Gaps = 5/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           + K  +I+  F  + S+EL++P+T+I G+ +LL+ S L    S +  +   I   +  + 
Sbjct: 265 IEKEKQIRQEFFSNASHELKTPITSIQGYAELLE-SGLIQDESMKMDFARRIKKEAVNMT 323

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL ++ ++A   ++  + + ++ LL E+  S+  +   + + +   +D +     
Sbjct: 324 GLINDILMISKLEAKDAEVVVTDVRISVLLEEIMDSLKPQAASSQVFLH--ADCQPLCIR 381

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           A+ Q++ ++ + +LSNA+ ++  G  V +      G+ +  V++NG  IPE+    +F R
Sbjct: 382 ANVQQMKELLTNLLSNAVKYNHPGGQVWINIREQGGNMVIRVRDNGMGIPEESLDRIFER 441

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V      ++ G GLGLSIV+  +N + G + ++S  E  T     IP
Sbjct: 442 FYRVDKGRSRKQGGTGLGLSIVKHIVNFYQGTIHVTSKLEQGTEFVVTIP 491


>gi|169829555|ref|YP_001699713.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
 gi|168994043|gb|ACA41583.1| Alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
          Length = 498

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L + ++I+  FV +VS+ELR+P+T+I GF++ L     G+   ++    ++E I   S  
Sbjct: 269 LVRLEQIRKDFVANVSHELRTPITSIKGFSETLLD---GAYKDEKMLISFLEIIYKESNR 325

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ D+L+L+ ++     +N   + L D+L    +  A ++ E N+  +V  DG +  
Sbjct: 326 LQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDGDV-Q 384

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R++QI + +++NA+ +S + +TV ++   +    I  +++ G  I +     VF
Sbjct: 385 VMGDANRIIQIVTNLITNAITYSPENTTVSIRLKENETYGIIEIEDQGIGIEKHEIARVF 444

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGL+IV+  +  H G + + S     TT+   IP
Sbjct: 445 ERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEVGVGTTMIVMIP 496


>gi|117923957|ref|YP_864574.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607713|gb|ABK43168.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1064

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 129/258 (50%), Gaps = 12/258 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +++T+  + E+ L    +     +  K+ F+  +S+E+R+PL  I+G  DLL  +   
Sbjct: 532 VLLDMTERKQYEQRLESARQQADAGNRAKSEFLAVMSHEIRTPLNAIMGMGDLLGET--- 588

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+  Q  Y+     +   L+ L+ DILDL+ ++ G ++L  +   +  L+ EV + + +
Sbjct: 589 ALSPVQRHYLSISQHAGETLVELIEDILDLSRIEVGELELEPAPFEVEALVEEVCEVVTS 648

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARD- 715
             H+  + + +  D  L    + D++RL QI   +L NA+ F+  G  ++     AAR  
Sbjct: 649 SAHDKGLILLMRIDPLLPPVLIGDKKRLRQILFNLLFNAVKFTKHGEVMLDIRHDAARSA 708

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G  +  V++ G  + E+M + VF  F        R+  G GLGL+I +  ++  GG + 
Sbjct: 709 AGAVLLQVRDTGVGMAEEMIERVFEPFTQGDSTITRQYGGSGLGLTICKRLVSKMGGDIQ 768

Query: 774 ISSS-DEGVT-TINCRIP 789
           + S+   G T T+   +P
Sbjct: 769 LESALGRGTTATVQLVLP 786


>gi|297180418|gb|ADI16634.1| signal transduction histidine kinase [uncultured delta
           proteobacterium HF0010_01J10]
          Length = 692

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E +EA +KAD     F   VS+ELRSP+T I    + L+         +Q+ Y + I A 
Sbjct: 455 ELDEARQKAD-----FAAIVSHELRSPITQIRLKGEALQLDLTVDDQDRQAHY-DAIVAQ 508

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L  LV+++LD A+++ G       ++ L  LL    +++A +       ++V     
Sbjct: 509 AERLSRLVDNVLDFASIERGSKTYAIKSVALKPLLTLTARTMADEARAAGAPLRVNVPDH 568

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L   + DR  + Q+   ++SNA+ + + G  + L+A         +V +NG  IP++   
Sbjct: 569 LPRVMCDRDAITQVVLNLISNAIKYGASGGVITLEAQLAPKGVRVAVADNGQGIPKESQD 628

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
            +F  +  V++    ++RG G+GL+IV   +  HGG++ ++SS  EG T
Sbjct: 629 RIFEHYYRVASTSVRKKRGTGIGLTIVRYIVEAHGGNIGVTSSPGEGAT 677


>gi|296156019|ref|ZP_06838858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295893525|gb|EFG73304.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 776

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 9/266 (3%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           S  V E  + PL NA+  +        ++T+  RAE+ LT  N  L KAD  K+ F+  +
Sbjct: 363 SRGVCETVVKPLANARGDVYGAVSINRDITERRRAEQQLTRLNLELSKADRRKDEFLATL 422

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           ++ELR+PL  +    ++L+  +        S+ V         + +LV+D+L+++ +  G
Sbjct: 423 AHELRNPLAPMRNVLEILRLKEFADPQLSWSRDV--FDRQLQHMTHLVDDLLEVSRITQG 480

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L    + L   +    ++    +  ++  + V    +    +AD  RL Q+   +L+
Sbjct: 481 KLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLN 540

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           NA  ++  G ++ L A R+  + +  V+++G  IP +   SVF  F  ++ A    + G+
Sbjct: 541 NAAKYTPPGGSISLAAEREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGL 600

Query: 755 GLGLSIVESFINLHGGHVSISSSDEG 780
           G+GL++V     LHGG V+  S   G
Sbjct: 601 GIGLALVRGLAELHGGTVAAFSEGPG 626


>gi|295688134|ref|YP_003591827.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430037|gb|ADG09209.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 633

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ +K+ F+ ++S+E+R+PL  ++   +++    +  L   Q + +  I  S  +LL ++
Sbjct: 246 ANVLKSHFLANMSHEIRTPLNGVLAMAEVMD---MDDLKPAQRERLAVIRESGGLLLAVL 302

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LDL+ ++AG +++      +  L   +++S A +  E  +  +V ++    G +  D
Sbjct: 303 NDVLDLSKIEAGRLEIQDRPFDIAQLAQSIRESYAPQAREKGLAFEVAVAPEAHGLWRGD 362

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
             RL QI   ++SNA+ F+ +G+  +   +A D       V + G  I  ++   +F++F
Sbjct: 363 VDRLRQILGNLISNALKFTLEGAVAVRFASAEDGSGLRIDVADTGIGIAPEILPRLFDKF 422

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT-TINCRIPSKE 792
           V       RR  G GLGL+I      L GG + + S +  G T T+   +P +E
Sbjct: 423 VQADSSTTRRFGGSGLGLAICRELAALMGGSIKVQSREGRGSTFTVLVALPREE 476


>gi|260494920|ref|ZP_05815049.1| sensor histidine kinase [Fusobacterium sp. 3_1_33]
 gi|260197363|gb|EEW94881.1| sensor histidine kinase [Fusobacterium sp. 3_1_33]
          Length = 623

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 123/241 (51%), Gaps = 6/241 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V   + L+   E    A++ KN F+  +S+E+R+PLT IIG++ +L   ++  ++SK+  
Sbjct: 140 VERTKELSISKEVAESANKAKNEFLAKISHEMRTPLTPIIGYSRIL-LKEINDVSSKEK- 197

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E I  S   LLN  N++LD + +++G + LNY T  +  L  ++           NI 
Sbjct: 198 -LEIIHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRKLFQDIYHEHIDLAKMKNIN 256

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            K+       S  +D+ ++ +I   I+ NA+ ++ KG  V+     +     F+V ++G 
Sbjct: 257 FKIDYLHANVSIYSDKIKIYEIAKNIIHNAIKYTEKG-FVLCDIFVEKNTLFFNVYDSGI 315

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + E+  K++F  FV   +  ++ G GLGLSI +  + +  G + + S     +T   +I
Sbjct: 316 GMSEENIKNIFESFVQIGN--EQSGAGLGLSITKKLLEVLNGKIEVESKVGMGSTFKIQI 373

Query: 789 P 789
           P
Sbjct: 374 P 374


>gi|169334063|ref|ZP_02861256.1| hypothetical protein ANASTE_00456 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258780|gb|EDS72746.1| hypothetical protein ANASTE_00456 [Anaerofustis stercorihominis DSM
           17244]
          Length = 915

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 129/250 (51%), Gaps = 15/250 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +   E+ EA  KA   K+ F+  +S+E+R+P+  IIG T++   ++   L     + +  
Sbjct: 532 KVKVEEAEASSKA---KSEFLSLMSHEIRTPINAIIGLTNINMMNE--DLPEPLKKNLSK 586

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S+  LL+LVNDILD++ +    M +N     L  ++N++ +   +K  E  I++   
Sbjct: 587 IDSSAQFLLSLVNDILDMSKIQNYKMVINSECFDLTKVINDIDELFISKKEEKCIKLTYD 646

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARD--NGDFIFSVKNNG 727
            D +   F+ D  R+ QI S I+SNA  F+ +   +IL   +  +D  + D  FS+K+NG
Sbjct: 647 IDLQNKYFMGDSVRIKQIISNIVSNAFKFTEEDGEIILTIREIVKDSNSSDVFFSIKDNG 706

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG---VT 782
             I ED    +F  F   + +     G GLGL I    + L GG + + S++ EG     
Sbjct: 707 IGIKEDKLSKIFEAFEQVSINYNNETGTGLGLFICNHLVKLMGGDLKVKSTEGEGSDFYF 766

Query: 783 TINCRIPSKE 792
           T+N  I S++
Sbjct: 767 TLNLPIASEK 776


>gi|281358214|ref|ZP_06244697.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281315304|gb|EFA99334.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 1131

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 131/255 (51%), Gaps = 12/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++   V  ER L+   E  R A + K++F+  +S+E+R+PL  +IG +DLL++ ++   
Sbjct: 737 IDIFRQVEVERKLSRALEQARLAAQAKSTFLATMSHEIRTPLNAVIGLSDLLRSPRIS-- 794

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++++  + E I+ S   LL L+ND+LDL+ ++A  M+L    + L  LL+EV Q  A   
Sbjct: 795 DAQRVAFSEAINTSGKALLQLINDVLDLSKIEAMKMELRPGPVSLTQLLSEVHQIFAQSA 854

Query: 663 HENNI-RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDN 716
            +  +    V  + +    + D  R+ Q+   ++ NA+ F+++G  V L+ A       +
Sbjct: 855 ADKGLEFEFVPPEPEPPKLLLDEVRVRQVLLNLIGNAVKFTTRG-FVKLECALGFNRTPD 913

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            + + +V ++G  I  +    +F  F   V+   R    G GLGL+I +  I    G + 
Sbjct: 914 CEVLITVADSGVGIDPEFMAHLFEPFRQAVNADSRSFEGGSGLGLAISKRLIEQMNGTLD 973

Query: 774 ISSSDEGVTTINCRI 788
           + SS    TT   R+
Sbjct: 974 VESSLGVGTTFTVRL 988


>gi|186683317|ref|YP_001866513.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465769|gb|ACC81570.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 701

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 116/236 (49%), Gaps = 17/236 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  VS+ELR+P+T IIG+  +L+T  L    +K +  +E I  ++ + + L+ D+L
Sbjct: 292 KDEFLAIVSHELRTPMTAIIGWAGMLQTGVLD--EAKATLALEIIERNANLQMQLIEDLL 349

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ +  G + L+   + L +++    + + +  +  +I+++ I D  +     D  RL 
Sbjct: 350 DISRIVRGELSLSIDLVDLVEVITAAIEVVQSLANAKDIQLETILDTSIEKIWGDSDRLQ 409

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPEDMCK 736
           Q+   +L+NA+ F+  G  V ++ +++ G                 V + G  I  D   
Sbjct: 410 QVVLNLLTNAIKFTPNGGRVEVRLSKEMGSREEFSQPAIPNYLQIEVTDTGKGISPDFLP 469

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            VF RF    + H    +G+GLGL+I    + LHGG +   S   G   T   ++P
Sbjct: 470 HVFERFWQADSTHTRSNKGLGLGLAIALHLVELHGGTIDAQSQGIGQGATFTVKLP 525


>gi|329851151|ref|ZP_08265908.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328839997|gb|EGF89569.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 680

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 6/249 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  R E  L           + K+ F+ ++S+E+R+PLT I+G+ +LLK   +G L 
Sbjct: 281 DITDQSRYEETLRTAKRDAEAHQQAKSDFLSNMSHEIRTPLTTILGYANLLK--GVGDLP 338

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                Y+  I+ +   LL+L+ D+LD + ++AG + L+     L  L  +V         
Sbjct: 339 KDARHYIGRINKAGEALLSLITDVLDFSKLEAGQVTLDPQPTDLRQLAGDVVDQFMAMTD 398

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             NI I    D     ++  D  R+ Q+   ++ NA  F+  G   +  A  D G     
Sbjct: 399 TRNITIGFDYDDASPVWLEIDDVRIRQVLYNLIGNACKFTHDGYVAVTLAVSD-GQLRVK 457

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK++G  +  +    +F RF  V N+   +  G GLGLSI    + L  G + + S    
Sbjct: 458 VKDSGPGLTPEQRSRLFTRFNQVDNSINRKYGGSGLGLSICHEIVKLMQGRIGVESEAGQ 517

Query: 781 VTTINCRIP 789
            +T    IP
Sbjct: 518 GSTFWFEIP 526


>gi|303246261|ref|ZP_07332541.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio fructosovorans JJ]
 gi|302492324|gb|EFL52196.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio fructosovorans JJ]
          Length = 396

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 23/257 (8%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + R    L  K EA   A+  K +F+ ++S+ELR+PL  I G  +LL  S    L+++Q 
Sbjct: 137 AARTAELLRAKEEA-EAANRAKTAFLANMSHELRTPLNGIHGMIELLAES---GLDAQQR 192

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++ +Y+  S+  LL L+  +++L+ +DAG M L  +   L++ L  +  + + K     +
Sbjct: 193 EFADYLRGSANRLLALLTSLMELSRLDAGGMVLAPAPYDLSETLEALTAAFSRKAAAKGL 252

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------ 720
             +      +    V DR  L+Q    +L NA+ F+ +G  V+     D    +      
Sbjct: 253 SFRADMATDMPRLVVGDRAALVQALVNLLENAVKFTPRGGVVLAAGPMDPPADVRAFPEE 312

Query: 721 ---------FSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHG 769
                    F V + G  I +D   ++F  FV   +    +  G GLGL I +    LHG
Sbjct: 313 RTPWRRWLRFCVHDTGVGIAQDKLANIFRSFVIAEDFLSKEFGGAGLGLCIAKELAALHG 372

Query: 770 GHVSISSSDEGVTTINC 786
           G V++ S+  GV +  C
Sbjct: 373 GRVTVESA-PGVGSRFC 388


>gi|316935647|ref|YP_004110629.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris DX-1]
 gi|315603361|gb|ADU45896.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris DX-1]
          Length = 1195

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 124/247 (50%), Gaps = 2/247 (0%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            F +++   R E  L++      +A   K   +  +S+E+R+PL  IIGF +++   + G 
Sbjct: 940  FRDLSQVQRTETELSQARRLAERAAGAKADVLARLSHEIRAPLNAIIGFAEVMIEERFGP 999

Query: 602  L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L N +   Y++ I AS   ++ +V+D+LDL+ ++ G + L ++++ LN+L+ +    +  
Sbjct: 1000 LGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASVNLNELVEQSVAVMQP 1059

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719
            + +   I I+      L + VAD Q L QI   ++  ++  ++ G  VI+  A  D G+ 
Sbjct: 1060 RANRERIIIRTSLAHLLPAVVADAQALRQIIMNLIGTSIHLANAGGQVIVSTALSDVGEV 1119

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            +  +++ GS + +D   +    F + A   +    G+ LS+ ++ +  +     I S+ +
Sbjct: 1120 MLRIRDTGSRLNDDELAAALQPFRTPAPSDRTEAAGVSLSLTKALVEANRATFHIKSAPQ 1179

Query: 780  GVTTINC 786
              T I  
Sbjct: 1180 SGTLIEV 1186


>gi|262382343|ref|ZP_06075480.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295221|gb|EEY83152.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 569

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +R ERA     E   +AD +K++F+ ++++E+R+PL  I+GF+ +L   +       + 
Sbjct: 332 GLRLERA----KEKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEE---DRETRL 384

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++   I +++ +L  L+ D+LDL+ +++  M L Y  + +  L+ E+   I  +M  + I
Sbjct: 385 EFSNIIQSNNELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRM-PSGI 443

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            ++ ++D +     AD+ RL QI + +L+N++  + KG  +     R      F V+++G
Sbjct: 444 ELR-LNDCEALVMEADKNRLTQILTNLLTNSIKHTEKG-FIRFGYKRTAASVEFFVEDSG 501

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP D   S+F+RFV        +GVGLGL+I    +   GG + ++S
Sbjct: 502 EGIPRDKIDSIFSRFVQ--LDSWSKGVGLGLAICRGLVEQMGGKIWVTS 548


>gi|257063842|ref|YP_003143514.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791495|gb|ACV22165.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
          Length = 556

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 130/249 (52%), Gaps = 10/249 (4%)

Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QS 607
           AE+A  L E N  L + D  K+ F   +S+ELR+P T I  + D+L+    G L+ + + 
Sbjct: 305 AEQAAKLEEMNRRLTENDLYKSHFFTMMSHELRTPTTVIRAYIDMLEEE--GDLDDEARR 362

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             V+ I  ++  L  LV+ IL+ A ++AG +KL  + +   D++ EV++++     + +I
Sbjct: 363 NAVKAIRTNAQSLSKLVDSILESARMEAGAVKLEKTVVDAADIMVEVEKTLTPLAQDKSI 422

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKN 725
            ++V S G    F+AD  +LL I   + SNA+ ++  G  V + A+ D   G+  F V +
Sbjct: 423 DLQV-SYGNTPLFMADANKLLHILENLGSNAIKYTGFGGEVSVSASLDEEAGEMRFVVSD 481

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  I E   + VF +F        +   G GLGL++ + +  LHGG + + S+    + 
Sbjct: 482 NGIGISEADKQVVFEKFKQAGSSVSKPVSGSGLGLALAKEYAELHGGSILLESALGQGSE 541

Query: 784 INCRIPSKE 792
               IP +E
Sbjct: 542 FTVCIPFEE 550


>gi|298528942|ref|ZP_07016345.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510378|gb|EFI34281.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 468

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 123/236 (52%), Gaps = 10/236 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ L E  +A   A + K+ F+ ++S+E+R+PL  I G   L++ +   SL+ +Q + 
Sbjct: 217 KVEQELIESRDAAEAATKAKSGFLANMSHEIRTPLNGIFGMLQLMEDT---SLDEEQQEL 273

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++   AS   +L +++DIL+ A +D    +L      L  ++ +  QS+     +  + I
Sbjct: 274 LQTAKASGRGILTILSDILEFAGLDQVEPRLENRPFDLRSVVQQTIQSLEASARQKGLGI 333

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVK 724
           K+ I+    G    D+ R+ QI   +LSNA+ F+  G       +L++  D+    F++ 
Sbjct: 334 KLSIAADLPGEVCGDQARVRQILFNMLSNAVKFTQDGEIHLDVSLLRSYEDSILAGFALS 393

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           ++G  I +D+   VF  F    +   RR  G+GLGLSI  + + L GG +++ + +
Sbjct: 394 DSGPGISDDLIFQVFQPFSQADNSFTRRHGGLGLGLSIARNLVKLMGGTIALDTEE 449


>gi|254282460|ref|ZP_04957428.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium
           NOR51-B]
 gi|219678663|gb|EED35012.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium
           NOR51-B]
          Length = 1316

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 134/257 (52%), Gaps = 19/257 (7%)

Query: 543 VNVTDSVRAERALTEKNE--------ALRKADEI---KNSFVQHVSYELRSPLTNIIGFT 591
           VN+  +   ER LT++ +        A R+A+E    K+ F+  +S+E+R+PL  +IG  
Sbjct: 659 VNLAQAEARERELTQRVQERTLDLELATREAEEANRAKSEFLAVMSHEIRTPLHGMIGMN 718

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL  +    +  +Q ++ +    S   LL+L+N+ILDLA ++A  M++  +   L +L+
Sbjct: 719 ELLIKT---DITPQQRRFTKAALNSGKTLLHLINEILDLAKIEADRMEVEETDFDLIELI 775

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +EV         +  + I  + +  + + +  D Q++ QI + +L NA+ F+ +G  + +
Sbjct: 776 DEVCYLQGEPAQKKGLAIYHLPEAGIANRYRGDSQKIRQIVTNLLGNAIKFTDRGH-ITV 834

Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           +  R   D I  +V++ G  I E++   +F +F        R+  G GLGL+I  +F  L
Sbjct: 835 RVQRTIDDTISIAVQDTGIGIHEEVRDRIFEKFTQADASTTRKYGGTGLGLTICRNFATL 894

Query: 768 HGGHVSISSSDEGVTTI 784
            GG + I  S +G  T+
Sbjct: 895 LGGKLDILESGDGTGTL 911


>gi|160938729|ref|ZP_02086081.1| hypothetical protein CLOBOL_03624 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438428|gb|EDP16187.1| hypothetical protein CLOBOL_03624 [Clostridium bolteae ATCC
           BAA-613]
          Length = 446

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 120/242 (49%), Gaps = 16/242 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L ++ + +N F+   S+ELR+PL  I       +T+       ++ +++  I    + 
Sbjct: 201 KPLAESQKQQNEFIAAASHELRAPLAVIRSSICAARTAP-----DQREKFMANIDRECSR 255

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           +  LV D+L LA+ D G   L  S++ ++ LL  + +       +  + +K+ + +  L 
Sbjct: 256 MSCLVGDMLLLASADTGQWSLRTSSLDMDTLLISIYERFEPLYQDKGVCLKLDLPEASLP 315

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------RDNGDFIFSVKNNGSS 729
               D  RL QIF+ +L NA+ ++ KG +V + A+         R       +V + GS 
Sbjct: 316 RIYGDENRLEQIFAVLLDNALRYTPKGRSVTVAASVQTDKHLLSRSRSIVCLTVSDQGSG 375

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + ++  K +FNRF   ++ R  ++  GLGLSI +  + LH G +S+S S +G      R+
Sbjct: 376 MDDETKKHIFNRFYRGDSARSHKQNYGLGLSIAKELVQLHKGTISVSDSPDGGACFLVRL 435

Query: 789 PS 790
           P+
Sbjct: 436 PA 437


>gi|225437449|ref|XP_002272649.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743925|emb|CBI36895.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 154/312 (49%), Gaps = 43/312 (13%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +I   D  RK  +  LEL+ + V +   + L +A  +       +S+RA   L E+N AL
Sbjct: 278 LILPSDSGRKWREHELELV-EVVADQVAVALSHAAIL------EESMRARDQLMEQNVAL 330

Query: 563 ----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               R+A+     +N F+  +++E+R+P+  II  +  L  ++L     +Q   +E +  
Sbjct: 331 DLARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSFLLETEL---TPEQRAMIETVLK 387

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS +L  L+ND+LDL+ ++ G ++L+  T  L+ +L EV   I        + + +I   
Sbjct: 388 SSNLLATLINDVLDLSRLEDGSLELDIGTFNLHAVLREVVNLIKPISSIKKLSMTLILAP 447

Query: 676 KLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RD-----------NG 717
            L    V D +RL+Q    +  NA+ F+ +G   ++ +       RD           +G
Sbjct: 448 DLPECAVGDEKRLMQTLLNVTGNAVKFTKEGYVSVIASVAKPETLRDWRTPEFYPVPSDG 507

Query: 718 DFIFSV--KNNGSSI-PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
            F   V  K++G  I P+D+   +F +F  + +   R   GVGLGL+I + F++L GGH+
Sbjct: 508 HFYLRVQIKDSGCGITPQDI-PLLFTKFAQSRNGSNRTNSGVGLGLAICKRFVSLMGGHI 566

Query: 773 SISS--SDEGVT 782
            I S   D+G T
Sbjct: 567 WIESEGPDKGCT 578


>gi|160893754|ref|ZP_02074538.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50]
 gi|156864739|gb|EDO58170.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50]
          Length = 501

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R + E  + L +++E + SF+ ++S++ RSPLT+I G+ + +    +     K  +Y++ 
Sbjct: 231 RYMEEMADELSRSNEYRRSFISNISHDFRSPLTSIKGYIEAMIDGTIPP--DKHEKYLQI 288

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + + +  L  L   +L+L   D+  ++L+ S   +  ++     +   +  +  I +  I
Sbjct: 289 VLSETMRLTKLTQGLLELNNFDSFDLQLDKSNFDIKSIILPTINTFEGRCQDKGIYLHAI 348

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                    ADR R+ Q+   ++ NA+ F+ +G  + ++    +     SVK+ G  IP 
Sbjct: 349 FHTDNTIVYADRTRIQQVIYNLVDNAIKFTPEGRQITVQVTEKSDKVYVSVKDEGVGIPP 408

Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
           +  K VF+RF  ++  RG+ + G GLGL+I +  I  HG +++++S
Sbjct: 409 ESIKKVFDRFYKTDPSRGKDKTGTGLGLAITKEIIKAHGENITLTS 454


>gi|126657552|ref|ZP_01728708.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110]
 gi|126621256|gb|EAZ91969.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110]
          Length = 1497

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 138/269 (51%), Gaps = 23/269 (8%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKA----------DEIKNSFVQHVSYELRSPLTNIIGF 590
            T +++T+  R E+ L  +N+AL +A          ++ K+ F+ ++S+E+R+P+ +I+  
Sbjct: 1084 TVMDITERKRIEQELVRRNQALEEAIAVAQVADSANQAKSEFLANMSHEIRTPINSIMLV 1143

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
              LL+ +KL   +++Q + ++ ++ +S  LLN++NDIL L+ +++  ++L +    LN++
Sbjct: 1144 GQLLEGTKL---DTQQKKLLQTLTNNSNHLLNIINDILSLSKLESRSLELEHRPFHLNEM 1200

Query: 651  LNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708
              E+  +   +     I +   I+       + D  RL Q+F  ++SNA+ F+S G  TV
Sbjct: 1201 FQELSNTFTPQAQSKEIGLTFTIASDVPDVLMGDDFRLQQVFRNLISNAIKFTSSGQVTV 1260

Query: 709  ILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSI 760
                 RD+       +  F+V++ G  I     + +F  FV   N+   Q  G GLGL+I
Sbjct: 1261 NASCDRDSVSEKSQVNLYFTVQDTGIGIDPAKQEDLFQPFVQADNSTTRQFGGTGLGLTI 1320

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIP 789
                I    G + + S     +T   +IP
Sbjct: 1321 CRRIIQTMNGEIGLDSIVGEGSTFWLKIP 1349


>gi|160872826|ref|ZP_02062958.1| sensory box sensor histidine kinase/response regulator
           [Rickettsiella grylli]
 gi|160872926|ref|ZP_02063057.1| sensory box sensor histidine kinase/response regulator
           [Rickettsiella grylli]
 gi|159120313|gb|EDP45652.1| sensory box sensor histidine kinase/response regulator
           [Rickettsiella grylli]
 gi|159121625|gb|EDP46963.1| sensory box sensor histidine kinase/response regulator
           [Rickettsiella grylli]
          Length = 396

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 131/257 (50%), Gaps = 10/257 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+VT   + E  L +  + +  A++ K  F++++ +++R+PL+ IIG  +LL+ SK   L
Sbjct: 127 VDVTKEKQQEEVLKKAKKQVEVANQAKTEFLENMRHDIRTPLSGIIGCAELLQ-SKTNDL 185

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
               S+Y   +  SS  LL+  N++L+   V  G +        L   L E+     +  
Sbjct: 186 TI--SEYANDLVKSSHALLDFHNNVLEGIQVATGEIPFVKKKFDLRQPLEEIINLNKSLA 243

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718
            E  + ++   D ++  +V  D  R+ +I  ++LSNA+ F+ KG   +   LK       
Sbjct: 244 AEKQLILQFHYDERIPQYVMGDPVRVQRILLELLSNALTFTKKGQVTVNIALKKKESREV 303

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  SV + G  IP+D  + +F RF  ++ +++G  +G+GLGL+ V+ F++   G + + 
Sbjct: 304 IVELSVSDTGMGIPKDKQEEIFIRFKRLTPSYKGIYKGLGLGLTTVKQFVDDLDGEIYVE 363

Query: 776 SSDEGVTTINCRIPSKE 792
           S  +   T  C IP +E
Sbjct: 364 SELDHGATFTCFIPFQE 380


>gi|239993376|ref|ZP_04713900.1| Signal transduction histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 641

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 130/241 (53%), Gaps = 15/241 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A+  K  F+  +S+E+R+PL  I G   LL  ++L   + KQ QY   + +S++IL  
Sbjct: 253 QQANRAKTDFLAVMSHEIRTPLNGIQGLATLLLDTQL---SDKQHQYASDLKSSASILAT 309

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           ++ND+LDL+ +++G+ +++ +   L+ +LN++   + T    N+ R+   S       V 
Sbjct: 310 VINDVLDLSKIESGMSEVDVTEFDLDAMLNDLITLLGTNASANSTRLVYKSKNMESVAVT 369

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD------FIFSVKNNGSSIPEDM 734
           +D  +L QI   ++SNA+ F+ KG+ T+  K  + + D       + +VK+ G  I  D 
Sbjct: 370 SDITKLRQIIINLVSNAIKFTHKGTVTISAKLKQPSQDTVSENHLVIAVKDTGIGIEPDR 429

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT-TINCRIPS 790
            + +F++F  +     R+  G GLGL+I +    + GG +  +S   EG   T+  ++ S
Sbjct: 430 LEHIFDKFTQSDSSITRKYGGTGLGLAIAKQLAQILGGDIKVVSKVGEGSCFTVTAKVQS 489

Query: 791 K 791
           +
Sbjct: 490 R 490


>gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 940

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 128/248 (51%), Gaps = 15/248 (6%)

Query: 553 RALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R++ E+  A ++AD   + K+ F+ ++S+E+R+P+  I+G   LL++++L   + +Q +Y
Sbjct: 466 RSVHEQKVATQQADVANKAKSEFLANMSHEIRTPINGIMGILQLLQSTEL---SPEQQEY 522

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
                 S++ L  L++DILDL+ ++AG M++    + L  L + V +       E +I +
Sbjct: 523 TNMGIVSASRLTRLLSDILDLSRIEAGQMEIRKEQVDLKKLCDSVDELFMVTSREKDISL 582

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSV 723
           +   D  L    + D  RL QI   ++ NA+ F+ +G   +      +  RD    + +V
Sbjct: 583 EFTQDPCLPQVLLGDEARLQQIVFNLVGNALKFTQEGRISVNWHLQQRRGRD-ARVLLTV 641

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  + +D    +F  F    NA   + +G GLGLSIV+  + L  G +++ S+    
Sbjct: 642 SDTGIGMTDDTLDELFKPFAQAENAFTRRYQGAGLGLSIVKRLVELMHGTLAVDSTPGQG 701

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 702 STFFVSLP 709


>gi|198283276|ref|YP_002219597.1| integral membrane sensor signal transduction histidine kinase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665237|ref|YP_002425863.1| phosphate regulon sensor protein PhoR [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247797|gb|ACH83390.1| integral membrane sensor signal transduction histidine kinase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517450|gb|ACK78036.1| phosphate regulon sensor protein PhoR [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 442

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 134/281 (47%), Gaps = 19/281 (6%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            SLQ      +  +LE    PL +A  ++ F +VT               +R+ ++++  
Sbjct: 164 PSLQLPAPADAQQILEGMRYPLADAGALVIFRDVTR--------------IRQLEQVRQD 209

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELRSPLT + GF + +  S + + +   SQ +  +   +  + +LV D+L LA
Sbjct: 210 FVANVSHELRSPLTVVRGFLENMLDSPIAADDEVSSQ-LRLMEQQTLRMQSLVEDLLSLA 268

Query: 632 TVDAGIMKLNY-STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
            ++A      +  T+++  +++    ++A  + +  ++I    DG LG F A+   L  I
Sbjct: 269 RMEAAEANPEHCETLMIAAMIHNTLDTLAPAIVQKRLQIDTALDGDLGIF-AETIDLTSI 327

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +L NA+ ++    TV ++  R +GD    V++ G  I  +  + +  RF        
Sbjct: 328 IRNLLENAIKYTPADRTVSVRWERRSGDLRLVVQDTGDGIAAEHLQRITERFYRVDKGRS 387

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RR  G GLGL+IV   +  + G++ ++S     TT     P
Sbjct: 388 RRMGGTGLGLAIVRHAVERYQGYLEVASEVGKGTTFTAHFP 428


>gi|167769066|ref|ZP_02441119.1| hypothetical protein ANACOL_00389 [Anaerotruncus colihominis DSM
           17241]
 gi|167668706|gb|EDS12836.1| hypothetical protein ANACOL_00389 [Anaerotruncus colihominis DSM
           17241]
          Length = 877

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 131/240 (54%), Gaps = 8/240 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615
           E    L K ++++ + ++ +S++LR+PLT I G  ++LL   KL    +K+  Y + I  
Sbjct: 637 EAAAVLAKNEQLRANLLRSISHDLRTPLTAISGNASNLLSNGKLFDAQTKEQMYTD-IYD 695

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L+NLV ++L ++ ++ G M L+ ST ++++++ E  + I  K  + ++ ++   + 
Sbjct: 696 DAMWLINLVENLLSVSRLEEGRMNLHMSTELMDEVIAEALRHINRKSADYHLIVREPDEY 755

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDM 734
            L     D + ++Q+   I+ NA+ ++  GS + ++  +  GDF+  S+ +NG  I  + 
Sbjct: 756 ILVQI--DVRLIVQVLINIIDNAIKYTPVGSDIRIEW-KKQGDFVLVSIADNGPGISAEA 812

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F  F S + +    RR +GLGL++ +S +N HGG +S++      T     IPS E
Sbjct: 813 KPHIFEMFYSASAKIADSRRSMGLGLALCKSIVNAHGGEISVADQIPHGTIFTFSIPSGE 872


>gi|124003297|ref|ZP_01688147.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123991395|gb|EAY30826.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 360

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 4/220 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+  ++ +S++LRSPL +I+G T LL+       N   S+Y++ I  S     NL+ D+L
Sbjct: 136 KDEMLRMLSHDLRSPLQSILGLTQLLEMETHSLDNQDLSKYIQLIKESCNFANNLMADLL 195

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D  +++ G  +LN S   L+ LL E       +  + NI + +I D    S    D  ++
Sbjct: 196 DTHSLEEGKGELNLSETKLSKLLTESCHMFEQQAIKKNISLNLIIDAAHDSEMTLDATKI 255

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           +Q  + +LSNA+ F+S+   V +     +      VK++G  IP D    +F++F     
Sbjct: 256 IQAVNNLLSNAIKFTSRHGQVTVTLNDASNYATICVKDSGIGIPADKIPFLFDKFTKARR 315

Query: 748 RGQ--RRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
            G    +  GLG+SI +  I+ H G +S+ S  +EG + I
Sbjct: 316 AGTSGEKTTGLGMSITKHIIDQHKGEISVESKVNEGTSFI 355


>gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1111

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +N  L++  +IK+ F+ + S+ELR+PL  IIG  D L     G L +K ++ +  I+
Sbjct: 430 LENQNIELKRLSQIKDEFLANTSHELRTPLHGIIGLADSLIDGATGKLPTKTTENLTMIA 489

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL LVNDILD + +    ++L   ++ L ++L+ V     + + + NI++     
Sbjct: 490 NSGRRLLTLVNDILDFSKLKHNTIELQLKSLGLWEVLDMVLVLSQSLVGQKNIKLINSVP 549

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSI 730
             L    AD  RL QI   ++ NA+ F+  G+  I    +     N     ++ + G  I
Sbjct: 550 DDLPGVEADENRLQQILYNLIGNAIKFTESGTVEITACEKIIDESNHYIAVTISDTGIGI 609

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            ED  + +F  F        R+  G GLGL++ +  + LH G + + S
Sbjct: 610 SEDKLEQIFASFEQGDGSTARQYSGTGLGLAVTKQLVELHCGTIEVRS 657


>gi|21307600|gb|AAK59397.1| KfaA [Myxococcus xanthus]
          Length = 518

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           DS R  + L      L+  ++ +   + +VS++L++PLT I  +  ++   KLG L   Q
Sbjct: 129 DSARRNKDLQTAIAGLKSLEQNREELLGNVSHDLKNPLTTIKSYLAMMGREKLGPLTDAQ 188

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+    +S  +L +VND+L ++ + +G M+LN     L  +  EV +S+        
Sbjct: 189 RRAVQICDRNSDRMLRMVNDLLLMSRLQSGKMQLNQRPFGLKAVAEEVVRSLGALAEHCK 248

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +R+ +    ++  FV  DR+R+ +    ++ N +  S    TV ++ + ++G  + +VK+
Sbjct: 249 VRVVIPPCPEV--FVRGDRERIAEAIHNLVENGIHHSEADDTVEVRVSAEDGLAMLTVKD 306

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
           +G  +  +  + VF+ F   A  G  R  G GLGL +V   + LHGG + S S   EG T
Sbjct: 307 SGPGMSSEALEHVFDAFY-RATPGMPRPPGAGLGLPLVGKIVALHGGRMESASVLGEGST 365


>gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB]
 gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1439

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 10/241 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T    AER           A   K  F+ ++S+E+R+P+  IIG T L   ++L   
Sbjct: 688 VDITALKEAEREADRARATAESAAAAKADFLANMSHEIRTPMNAIIGMTHLALQTEL--- 744

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           NS+Q  Y+  +  ++  LL ++NDILDL+ ++AG+M   ++   L+  L  +    + K 
Sbjct: 745 NSRQKNYLTKVDNAAKGLLGIINDILDLSKIEAGMMHFEHAPFSLDASLERLSDMCSLKA 804

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG- 717
            E  + +   I+       + D  RL Q+   ++ NA+ F+  G    TV L A R+N  
Sbjct: 805 RERGLELLYDIAPEVPDQLIGDSLRLGQVLLNLVGNAIKFTEAGEITVTVKLLANRENEV 864

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           D  F V + G  +  +    +F+ F        R+  G GLGLSI +  + L GG + +S
Sbjct: 865 DLGFEVIDTGIGMNVEQQSQLFSAFTQADTSTTRKYGGTGLGLSICKRIVELQGGSIGVS 924

Query: 776 S 776
           S
Sbjct: 925 S 925


>gi|331646251|ref|ZP_08347354.1| TMAO reductase sytem sensor TorS [Escherichia coli M605]
 gi|331045003|gb|EGI17130.1| TMAO reductase sytem sensor TorS [Escherichia coli M605]
          Length = 910

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D      
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTVL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRIDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRVP 661


>gi|218439784|ref|YP_002378113.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172512|gb|ACK71245.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1478

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 5/230 (2%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            ER    + EA R  + IK+ F+  +S+ELRSPL  I+G+  LL++      N  Q++ +E
Sbjct: 1090 EREKLAREEAER-VNRIKDEFLAVLSHELRSPLNPILGWAQLLRSGSFDKAN--QNKALE 1146

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I  ++ +   L+ D+LD++ +  G + LN + + L   +    +++       +I IK 
Sbjct: 1147 IIERNAKLQAQLIEDLLDVSRILRGKLSLNVTQLNLFFPIQGAIETVRLSAQAKSIEIKT 1206

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                 +     D  R+ QI   +LSNA+ F+ +G  + +   + N     +VK++G  I 
Sbjct: 1207 NLATDVVQISGDAGRIQQIVWNLLSNAIKFTPEGGQIEIGLEQVNHQAQITVKDSGKGID 1266

Query: 732  EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
                  VF  F        R+  G+GLGL+IV   + +HGG VS  S+ E
Sbjct: 1267 PQFLPHVFEHFRQADSTTTRKFGGLGLGLAIVRHLVEMHGGTVSAYSAGE 1316


>gi|154253591|ref|YP_001414415.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157541|gb|ABS64758.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 468

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 12/245 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY- 612
           A T    ++ + ++ K  F+ ++S+ELR+PL  I+GF++ ++    G L     +YVEY 
Sbjct: 217 AKTRLYASMERENKAKTEFLANMSHELRTPLNAILGFSEAMQMELFGPLG--HPRYVEYM 274

Query: 613 --ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  + T LL+LVNDILDL+ ++   M L    I  + + +     +  +     +++ 
Sbjct: 275 HDIHHAGTHLLSLVNDILDLSRIELEGMSLTPQRIDFSGVCHNCLAIVRGRAERGGVQLI 334

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGS 728
                       D +RL Q+   +LSNA+ F+  G TV L  + A D G  I  +++ G 
Sbjct: 335 FECAPPFPEVETDERRLKQVLINLLSNAVKFTPAGGTVSLDVRPAPDGGG-IIRIRDTGI 393

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            + E   +     F   A  G  R   G GLGL++V   + L GG ++I S     T + 
Sbjct: 394 GMSETEVEQALRPF-WQADAGLDRSFEGAGLGLALVSELLQLMGGSITIESERGAGTLVT 452

Query: 786 CRIPS 790
             +P 
Sbjct: 453 VGLPP 457


>gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
 gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
          Length = 553

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+E K+ F+ H+S+E+R+PL  I+G TD+L  ++   LN  Q ++++ I  S   LL ++
Sbjct: 185 ANEAKSQFLAHMSHEIRTPLNGILGLTDILAQTQ---LNENQLEFIKTIRHSGEALLAII 241

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + ++AG ++L      L  L ++++    +++ +  ++  +  D  +  F+  D
Sbjct: 242 NDILDFSKIEAGKLELESIDFSLPTLCDDLEGLFISQVQDKGLQFDINLDPNIPEFLNGD 301

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNR 741
             R+ Q+   ++SN++ F+ +G   +          +  F V ++G  I E+    +F  
Sbjct: 302 PLRIKQVLLNLISNSLKFTHEGYVKLDIRQSQATPLVLEFKVSDSGIGISEEKQDQLFKP 361

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           F        R+  G GLGL I +  + L GG++ + S  D+G T I
Sbjct: 362 FTQVDSSTTRKYGGTGLGLQISQRLVQLMGGNIRLHSQVDKGSTFI 407


>gi|307591954|ref|YP_003899545.1| response regulator receiver sensor signal transduction histidine
            kinase [Cyanothece sp. PCC 7822]
 gi|306985599|gb|ADN17479.1| response regulator receiver sensor signal transduction histidine
            kinase [Cyanothece sp. PCC 7822]
          Length = 1035

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 131/285 (45%), Gaps = 17/285 (5%)

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            R   + T+E L     +Y I P     T      V   ++  R   E++     A+  KN
Sbjct: 746  RAGKEATIEGLEAGADDYLIKPF---STYELIARVQTQLQMSRLRQEQS-----ANRFKN 797

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+Q V++EL++PL  I+ +  LL++        K +Q +  I  ++TI   LV D+LD+
Sbjct: 798  EFLQTVTHELQAPLAAILSWARLLQSQSFD--GKKTAQALASIERNATIEAKLVKDLLDV 855

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLL 688
            +++ +G ++L    + L  L  +V  ++        I +  ++   GK      D +RL 
Sbjct: 856  SSILSGKLRLQLQPVDLVPLTQDVITTLRQTAQAKQILLIERLPDPGKQVILTGDPERLK 915

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            QI S +LSNA+ F+     V ++      +    V + G  I  +    VF RF S A  
Sbjct: 916  QIMSHLLSNAIKFTPNKGKVYIELDDLAFEARLRVTDTGIGISSNFLVHVFERF-SQAEV 974

Query: 749  GQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
              R    GVG+GL+I    + LH G + ++S  EG   T   R+P
Sbjct: 975  PSRHSPGGVGIGLAIARYLVELHQGTIEVASGGEGRGATFTVRLP 1019



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 113/260 (43%), Gaps = 28/260 (10%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EAL + D  K +F  +VS+E R+PLT ++G  +   +     L   Q + ++ I  +
Sbjct: 341 KRAEALVELDRAKTAFFSNVSHEFRTPLTLMLGPAEDALSDASNPLAPLQYERIKIIHRN 400

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL LVN +LD + +++  ++  Y    L     E+     + + +  +R+ V     
Sbjct: 401 GLRLLKLVNTLLDFSRIESERVQAVYEPTDLATFTAELASVFRSCIEKAALRLVVDCPLL 460

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFIF---- 721
                 DR+   +I   +LSNA  F+  G   +           LK  R+N  F+F    
Sbjct: 461 AEPVYVDREMWEKIVLNLLSNAFKFTFSGEIKVSLRLVASEQEKLKDKREN--FVFTPSS 518

Query: 722 ---------SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
                    SV++ G  IP      +F RF  V  A      G G+GLS+V   I LH G
Sbjct: 519 LPIFPYIELSVQDTGIGIPRAEIPHLFERFHRVKGAKGRTYEGSGIGLSLVLQLIKLHSG 578

Query: 771 HVSISSSDEGVTTINCRIPS 790
            V +SS+    +     IPS
Sbjct: 579 IVGVSSTLGEGSCFKVFIPS 598


>gi|262275440|ref|ZP_06053250.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262220685|gb|EEY72000.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1306

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 126/245 (51%), Gaps = 18/245 (7%)

Query: 557 EKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           E NEALR+A E        K++F+  +S+E+R+P+  IIG +++L  ++L     +Q +Y
Sbjct: 627 EVNEALRRAKEDAEQANDAKSNFLAMMSHEIRTPINGIIGMSEVLSHTELAF---EQRRY 683

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I+ S+  LL+++ND+LDL+ ++AG M + + T  +++L+  V   +A ++ ++N+  
Sbjct: 684 NDTITTSANALLDIINDVLDLSKIEAGKMTVRHETFCIHELVENVTNIVAPRV-KSNVTF 742

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAAR--DNGDFIFSVK 724
              +D  L     +D  +L QI   +  NA  F+  G     I + +R  +  +    V 
Sbjct: 743 TTYTDPLLPHQITSDFSKLRQILVNLAGNAAKFTDSGYVDVSITQVSRIENRCEIALKVT 802

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I +      F  F  + N+ + + +G GLGL I   F  L  G +   SS    +
Sbjct: 803 DTGIGIEKAQLDKAFENFSQIDNSSKRRYQGTGLGLPICRKFTELLNGDIKAESSIGQGS 862

Query: 783 TINCR 787
           T + R
Sbjct: 863 TFSAR 867


>gi|222094734|ref|YP_002528794.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221238792|gb|ACM11502.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 896

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +   + +             D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKDWISI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|242824735|ref|XP_002488317.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218713238|gb|EED12663.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2232

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 14/236 (5%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +A   K++F+ ++S++LR+P+  IIG ++LL+ +   +L+  Q +Y+E I   +  LL L
Sbjct: 1825 EAANAKSTFLANISHDLRTPMNGIIGLSELLRET---NLSKDQGEYMESIRICADTLLAL 1881

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-- 681
            +NDILD + ++ G MKL+  ++ L D ++EV Q++     +N +      D      V  
Sbjct: 1882 INDILDFSKLEVGKMKLSIVSMNLKDTISEVVQALFHANRDNKLETVENLDQIPPDLVVL 1941

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             D  RL QI   +LSN+  F+  GS  I     +A +       SV + G  I ++    
Sbjct: 1942 GDPVRLHQIIMNLLSNSYKFTPNGSVSISGKVTRAGKRRIRLECSVSDTGIGISDEQKSR 2001

Query: 738  VFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIP 789
            +F  F S A     R   G GLGLSI ++ I ++ GG +S+ S+    TT+   IP
Sbjct: 2002 LFKPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGTISLESTLGVGTTVTFHIP 2056


>gi|17228134|ref|NP_484682.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17129984|dbj|BAB72596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 820

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 11/237 (4%)

Query: 549 VRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           ++  +AL +   E+   A+  K+ F+ ++S+ELR+PL  I+G+  +L  SK+  L  K+ 
Sbjct: 343 LKQSKALADAAKESADSANNAKSEFLANMSHELRTPLNGILGYAQILGRSKV--LPDKER 400

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q V  I    + LL L+NDILDL+ ++A  ++L      L   +  V +    ++ +  I
Sbjct: 401 QGVNIIHQCGSHLLTLINDILDLSKIEARKLELASQAFHLPSFMQGVVEICHIRVQQKGI 460

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI 720
                 D  L + + AD +RL Q+   +L NA+ F+ +GS  +      L+ +       
Sbjct: 461 EFHYEPDADLPAGISADEKRLRQVLINLLGNAIKFTDRGSVALRVQRTGLEESDPRTKLR 520

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
           FS+ + G  I       +F  F     + ++  G GLGL+I +  + L GG + + S
Sbjct: 521 FSIVDTGVGIASADINKLFQTFEQVGEQKRKVEGTGLGLAISQQLVQLMGGQIQVKS 577


>gi|229188542|ref|ZP_04315582.1| hypothetical protein bcere0002_2380 [Bacillus cereus ATCC 10876]
 gi|228594936|gb|EEK52715.1| hypothetical protein bcere0002_2380 [Bacillus cereus ATCC 10876]
          Length = 314

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++++        +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPESTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   +++I   ++ NA+ +   G T+ ++    + ++   + + G  IP+   +++F R 
Sbjct: 199 DHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIPKHDLQNIFERM 258

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    TT    IP
Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIP 307


>gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|158335539|ref|YP_001516711.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158305780|gb|ABW27397.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 711

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 124/241 (51%), Gaps = 8/241 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K   L + + +K+ F+  VS+ELR+P++NI     +L       L  +Q +Y++ + 
Sbjct: 465 LQQKMRELERLNSLKDDFLSTVSHELRTPMSNIKMAIHMLSQF---PLEPRQRRYIKILD 521

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A  +    L+ND+LDL  ++AG  ++    I +   L    +   +++ +  + ++V  D
Sbjct: 522 AECSRETELINDLLDLQRLEAGGNQIKSEPIKIQVWLPRALEPFQSRIKDRELNLRVNCD 581

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPE 732
             + +F +DR  L +I +++L+NA  ++ +   V   L+        +     N + IPE
Sbjct: 582 QSIPTFHSDRVSLDRILAELLNNACKYTPQSGEVSLTLQYLEFPKPMLRLQVTNEAEIPE 641

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F++F  V NA   ++ G GLGL++V+  I    G +S+SS  +G TT   ++P 
Sbjct: 642 QELPRIFDKFYRVPNADPWKQGGTGLGLALVQKLIEQLEGEISVSSR-QGTTTFIVKLPY 700

Query: 791 K 791
           K
Sbjct: 701 K 701


>gi|126657236|ref|ZP_01728402.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126621507|gb|EAZ92218.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 856

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 124/254 (48%), Gaps = 22/254 (8%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  + ++ + L KA+E KN  +  +++ELR PL NI+G  D+L  +   SL  K+    +
Sbjct: 369 ENIVKQRTKELEKANEEKNQILDKINHELRVPLNNILGSLDVLTQN--SSLTKKEQNSFK 426

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +S  LL L N IL+   + +  + + Y+ + L +L+  V +    +     +++K 
Sbjct: 427 MIHENSQYLLKLFNQILEFYKLTSEEISIQYNVVNLKNLVISVLKQYDQQAKAKQVKLKY 486

Query: 672 ISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--------- 721
             D ++  ++  D  +L +I   +L NA+ FS KG  + ++   DN  ++          
Sbjct: 487 YIDSEVSQYIKLDENKLTKILINLLDNAVKFSYKG-VITIRLFCDNQAWLLDNDIDYNSF 545

Query: 722 ------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                  ++++G+ IP ++ K VF  F       + +GVGLGLSI    I+L GG + + 
Sbjct: 546 KKNLWIEIEDHGNGIPIEIQKKVFKPFF---RWKENKGVGLGLSITRKLISLMGGKIYLK 602

Query: 776 SSDEGVTTINCRIP 789
           S     T +   IP
Sbjct: 603 SQLGRGTILQFHIP 616


>gi|119511775|ref|ZP_01630877.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
 gi|119463548|gb|EAW44483.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
          Length = 587

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 20/267 (7%)

Query: 542 FVNVTDSVRAERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           F +   +  A   L ++ EA R+    A  +K+ F+ +VS+E+R+PL  +IGF  L+   
Sbjct: 308 FADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLI-LE 366

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +     +Q Q+       S  LLN++NDILD+A ++AG M+L  S + LN+L  +V+  
Sbjct: 367 GMADDPEEQHQFTSEAHHLSIHLLNIINDILDIAKIEAGKMELVCSPVKLNELFEDVENF 426

Query: 658 IATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------ 709
           +  +    N+  R+ ++          + QRLLQ+   + +NA+ F+ +G   +      
Sbjct: 427 LRPQAESRNLSFRMHMLPTSDEIIVQGNYQRLLQVMLNLANNAIKFTQEGGITVSADLVL 486

Query: 710 ----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
                +  +  G     V + G  +  D    +F  F  V  +   Q  G GLGL+I + 
Sbjct: 487 KQVEFQKQQFPGMVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQYGGTGLGLAISQK 546

Query: 764 FINLHGGHVSISSSDEGV-TTINCRIP 789
            I   GG V   S  EG+ +T+   +P
Sbjct: 547 LIEAMGGEVHFYSLGEGLGSTVTFTVP 573


>gi|13472804|ref|NP_104371.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
 gi|14023551|dbj|BAB50157.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
          Length = 760

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   RAE +L    E    A + K+ F+  VS+E+R+P+  I+G   LL  +   SL+
Sbjct: 228 DITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLLADT---SLS 284

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YV  IS S++ LL L+ D+LD + ++AG        + + ++ + + + +A +  
Sbjct: 285 PEQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADNIIELLAARAF 344

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI 720
             +I +    +  +   + AD  R+ Q+   ++ NA+ F+  G  +  I +A  +  D I
Sbjct: 345 AKDIGLGCHVEPDVPQLITADPGRVRQVLLNLIGNAIKFTDGGGVLVSIARARSETSDRI 404

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F++ + G  + E+  + +F  F        R   G GLGL+I +  +   GG +S+SS
Sbjct: 405 CFTITDTGPGLREEDMERIFEEFEQADGTSTRAHGGAGLGLAISKRLVAAMGGTISVSS 463


>gi|295401271|ref|ZP_06811243.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111907|ref|YP_003990223.1| signal transduction histidine kinase NtrB [Geobacillus sp. Y4.1MC1]
 gi|294976678|gb|EFG52284.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217008|gb|ADP75612.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. Y4.1MC1]
          Length = 744

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 128/549 (23%), Positives = 228/549 (41%), Gaps = 86/549 (15%)

Query: 272 GNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQN 325
           G  K +++    N +    +AI  DV++   +  +L  + E    I      AI I+D  
Sbjct: 234 GTVKMFELTTTSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQAHEAILIWDDR 293

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL-RSANKLPEQLNWKTWKENIFSVYKS 384
            Y+   NR+    +E+ L  L        LL+FL R   K+          + +F+ ++ 
Sbjct: 294 GYILNANRAASRTFELPLNLLVRK----NLLDFLDRDDEKV----------QRVFAQFRK 339

Query: 385 SETHKD--TWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +   +D  T+H+PNG+   +  T       G  + +F N+T +  +E +     +     
Sbjct: 340 TGEIRDELTFHMPNGEDKQLEFTMKQGAIDGYHLTIFRNVTERRKMEKELRESEQKFRSI 399

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGT---------HIRNIAATCS 488
            DH   G+ ++G D RI   NP     ++  + +L   P T         H   +   C 
Sbjct: 400 FDHAMNGILLWGEDYRILDVNPIACEFFQAAKEQLLHRPITAFIPEKARKHFDKLIQQCD 459

Query: 489 R---YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
           R    Y E D    F++             G  + + +  L+  IIP      M+   ++
Sbjct: 460 RCGEAYAEMD----FSS-------------GEKQKIVEFALKKEIIP---GVGMIMLRDI 499

Query: 546 TDSVRAERALTEKNEALRKAD--EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           T+  R E  L      LRK+D   +       +++E+R+P+T + GF  LL+    GS+ 
Sbjct: 500 TE--RKELELQ-----LRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQ----GSIK 548

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              S Y   I +    + +++ + L LA   A   + N    ++ D ++ +  S    MH
Sbjct: 549 EDYSMYFNVIMSELKRIESIITEFLVLAKPQAIQYQQNDVCKIMQDTIDLI--SAQAMMH 606

Query: 664 ENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFI 720
                +++++D  L       +  +L Q+F  IL NA++   KG  V ++  R D+    
Sbjct: 607 ----NVQIVADFALPIPCIYCEPNQLKQVFINILKNAIEVMPKGGEVTVRIGRLDDSHIR 662

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            S+ + G  IP+D  K +   F +     + RG GLGL +    I  H G + + S    
Sbjct: 663 ISITDQGCGIPQDKIKKLGEPFYTT----KERGTGLGLMVSYKIIEEHQGKIDVESEVGV 718

Query: 781 VTTINCRIP 789
            TT +  +P
Sbjct: 719 GTTFHITLP 727


>gi|16126905|ref|NP_421469.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235688|ref|YP_002518125.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13424253|gb|AAK24637.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220964861|gb|ACL96217.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 690

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 11/229 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN F+ ++S+E+R+PL  +I     L  +    L SKQ++ V  I  S   L  LV+DIL
Sbjct: 321 KNDFLANMSHEIRTPLNGVIALAAALDETP---LTSKQAEMVAMIRRSGETLERLVSDIL 377

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D++ ++AG M L      L  L++ +      +  E  + +++  S    G F+ D  R+
Sbjct: 378 DVSKIEAGQMTLQPQAFDLGALVDGLLDVTRLRAKEKGVAVRLERSPTAAGGFLGDSVRI 437

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF 742
            Q+ S + SNA+ F+ +G  ++     + G+         V++ G     +  + +F RF
Sbjct: 438 GQVLSNLFSNAVKFTDQGEVIVRVDVEEAGNGQAARLFVEVEDTGVGFDAEKAEMIFQRF 497

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   RR  G GLGLSI ++ + + GG ++  SS    +     +P
Sbjct: 498 NQADSTITRRFGGSGLGLSISKTLVEMMGGEITAQSSPGAGSLFRVTLP 546


>gi|56478892|ref|YP_160481.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56314935|emb|CAI09580.1| putative sensory transduction histidine kinase of highly complex
            domain structure [Aromatoleum aromaticum EbN1]
          Length = 1519

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            ALT   E   +A   K++F+  +S+E+R+P+  ++G  ++L  +   SL+  Q+  V  I
Sbjct: 851  ALTRAREDAEQASRAKSAFLAAMSHEIRTPMNGVMGLIEVLART---SLSEHQADLVATI 907

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              SS+ LL +++DILD + ++AG +KL+   + + DL+  +  S+       ++ + V  
Sbjct: 908  CGSSSTLLRIIDDILDFSKIEAGRLKLDVRPVSIGDLVESLAGSLLPLAARLDVDLSVFV 967

Query: 674  DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKN 725
              ++   V AD  RL Q+   ++ NA+ FS+    V  + A               S+ +
Sbjct: 968  SPEVPERVEADEVRLRQVLYNLVGNAVKFSAGRQNVRGRVAVRVAVADVVPLQLAVSIVD 1027

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            NG  I  +  + +FN F        RR  G GLGL+I    ++L  G + + S     +T
Sbjct: 1028 NGIGIDPEKVEELFNPFTQAEASTTRRFGGTGLGLAICRRLVDLMEGGIKVRSEPGQGST 1087

Query: 784  INCRIP 789
                IP
Sbjct: 1088 FTVTIP 1093


>gi|330802602|ref|XP_003289304.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum]
 gi|325080602|gb|EGC34150.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum]
          Length = 1824

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 137/263 (52%), Gaps = 19/263 (7%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++T     +R + EK EA  +A++ K++FV  VS+E+R+PL+ +IG +DLL  +   
Sbjct: 1113 TLRDMTSRKDMQRLIFEK-EAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLET--- 1168

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +L+ +Q  YV+ I  SS  LL ++NDILD + +++  +K+      + +    V   ++ 
Sbjct: 1169 NLSEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLSV 1228

Query: 661  KMH-ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKA 712
              + E +I ++V  +     F  D  R+ Q+   +LSNA+ F+S+G  +        +  
Sbjct: 1229 AANDEVDILLRVPPNVPKIVF-GDAMRIRQVLLNLLSNAIKFTSRGHILTDISVDESVPT 1287

Query: 713  ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-N 766
            +    D I    ++++ G  IP+ +  S+F  F    +   R+  G GLGLSI +  I  
Sbjct: 1288 SNSEEDIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSITKRLIEE 1347

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            + GG + +SS     +T  C IP
Sbjct: 1348 VMGGTIQVSSIVNQGSTFKCIIP 1370


>gi|303327059|ref|ZP_07357501.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302863047|gb|EFL85979.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 981

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 132/240 (55%), Gaps = 11/240 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + +E+  +A++ K+ F+  +S+++R+P+  IIG T++ + +   +  +K    +  
Sbjct: 455 QALKDASESANQANKSKSEFLSSMSHDIRTPMNGIIGMTEIARVNIQDT--AKVQDCLHK 512

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I+ SS +LL+L+N++LD++ +++G + LN     + +L+  +  ++   + E N  + V 
Sbjct: 513 ITMSSNLLLDLINEVLDMSKIESGRLALNEREFNIAELVETLFTAVQPLLKEKNHTLNVH 572

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD----FIFSVKN 725
           I+D     F+ D  RL QIF  ++SNA+ ++ +G  +    +   DN      F F +++
Sbjct: 573 INDVVHEDFIGDPLRLQQIFINLMSNAIKYTPEGGNIDFSISEFHDNSPAYSKFQFILRD 632

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  +  +  + +F  F     A +    G GLG++I  + +++ GG ++++S     TT
Sbjct: 633 NGMGMTPEFLERLFLPFERADEARQKNIAGTGLGMAITRNIVHMLGGDITVASEPGKGTT 692


>gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
 gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
          Length = 934

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 12/229 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q  Y+  I  S+  LL
Sbjct: 281 QEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTP----LSATQIDYLHTIERSANNLL 336

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +++ND+LD + ++AG + L +   +L + ++EV   +A   H+  + + + + +      
Sbjct: 337 SIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHV 396

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL Q+ + +L NA+ F+ KG+  I    R       +    V + G  I E    
Sbjct: 397 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIEQRSLNTQAVELEVQVHDTGIGISERQQS 456

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            +F  F        RR  G GLGL I +  IN  GG ++  S     +T
Sbjct: 457 QLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGST 505


>gi|237807392|ref|YP_002891832.1| aerobic respiration control sensor protein ArcB [Tolumonas auensis
           DSM 9187]
 gi|237499653|gb|ACQ92246.1| multi-sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 782

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 17/235 (7%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE     + L KA + K +F+  +S+ELR+PL  ++G + +L  +    LN  Q QY
Sbjct: 264 RDITEHKRYQDELEKASQDKTTFISTISHELRTPLNGVVGLSHILLDT---PLNDLQRQY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIR 668
           +  I  S+  L N+ NDI+DL  ++   +K+  S I L  LL+++ Q+++T M E   + 
Sbjct: 321 LNTIHLSAVTLGNIFNDIIDLDKIERRRLKIANSKIDLRLLLSDL-QTLSTLMVEAKGLY 379

Query: 669 IKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSV 723
           +    DG +  + VAD  RL QI   +LSNA+ F+++G       +  +A +     F +
Sbjct: 380 LHFDIDGDVPHWIVADGTRLRQILWNVLSNAVKFTAEGGITFGVQVSPSAENKVHLRFDI 439

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++ G  IPE   +++F  +      G RR  G G+GL+I +  ++   G + + S
Sbjct: 440 EDTGIGIPEHEQENIFAMYYQVP--GTRRAVGTGIGLAITKQLVDAMDGMIHVDS 492


>gi|168819602|ref|ZP_02831602.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205343409|gb|EDZ30173.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320087774|emb|CBY97538.1| sensor histidine kinase FexB [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 778

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|119944259|ref|YP_941939.1| multi-sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119862863|gb|ABM02340.1| multi-sensor histidine kinase with CHASE and PAS/PAC sensory
           domains [Psychromonas ingrahamii 37]
          Length = 1255

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 124/253 (49%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  RA++AL        KA+  K+ F+  +S+E+R+P+  +IG  D+L+ S   SL 
Sbjct: 598 DITEQKRAKQALISAKTEAEKANLAKSQFLAAMSHEIRTPMNGVIGMVDVLQQS---SLK 654

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V+ I  S+  LL+++ DILD + ++AG + + Y+ + + +++ +    +A    
Sbjct: 655 GFQVDMVDTIRDSAFSLLSIIEDILDFSKIEAGKLDIEYAPMAVAEVVEKACFMLAHLAE 714

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSS----KGSTVILKAARDNGD 718
           +  + + + +D  +    + D  RL QI   + +NA+ FSS     G   +     D   
Sbjct: 715 KKKVELTLFTDPAIPDITLGDANRLRQIVVNLTNNAIKFSSGSDRPGRVSVQALMTDPTM 774

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V +NG  + E     +F  F        RR  G GLG++I  + + L GG +++ S
Sbjct: 775 LEIRVIDNGIGMNESALSKLFMPFYQADVTTTRRFGGTGLGITIARNLVQLMGGEITVQS 834

Query: 777 SDEGVTTINCRIP 789
           +    +  +  +P
Sbjct: 835 TLNKGSIFSVHLP 847


>gi|297243685|ref|ZP_06927616.1| signal transduction histidine kinase [Gardnerella vaginalis AMD]
 gi|296888436|gb|EFH27177.1| signal transduction histidine kinase [Gardnerella vaginalis AMD]
          Length = 391

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  E  E L  AD+++   + +VS+ELR+P++       +L+    G ++   S  +E I
Sbjct: 149 AFNEMAEELEHADQMRRELIANVSHELRTPVS---ALQAMLENLADGVVDPTPSN-MEAI 204

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV 671
              +  L +L+  +LDL+ V+AG   LN ++    D ++E+ +   IA   H +NI +++
Sbjct: 205 LNQTHRLADLITFLLDLSRVEAGAESLNITSFNFTDFIDEIIEPLEIADSGHNHNIEVQI 264

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
             + +L     D+ RL Q+F+ I+SNA+  S  G+ V++ A    +    I +V N G  
Sbjct: 265 NDEIEL---TGDQARLSQLFTNIISNALKHSDDGTRVLISAHINHNQNSVICNVVNFGEQ 321

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           IP++    +F RFV    R   +  G GLGLSI      LH G V +     G
Sbjct: 322 IPQEDRADIFRRFVKGNQRIGTESGGTGLGLSIARWAAQLHHGTVKVVDDKRG 374


>gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC
           BAA-895]
 gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNTTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNG--DFIFSVKNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N        +++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEIQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 929

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     LN+ Q+ Y+  I  S+  LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGLIGFTRQTLKTP----LNTTQTDYLLTIERSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L++ L++V   +A   HE  + + + I +     F
Sbjct: 342 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF---SVKNNGSSIPEDMCK 736
           V D  R+ QI + +L NA+ F+ +G+  I ++  R     +     +++ G  I E    
Sbjct: 402 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVLLEVQIRDTGIGIAELQQS 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 462 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 503


>gi|75906870|ref|YP_321166.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
 gi|75700595|gb|ABA20271.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
          Length = 1741

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 125/251 (49%), Gaps = 2/251 (0%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++TD  + E  L    E  ++  E+K+ FV   S+E R+PL+ I+  ++LL+  +   
Sbjct: 1492 LIDITDRKQLEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSELLEHYRHKW 1551

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               KQ  ++  I  +   +  ++NDIL +   +AG ++     + +      + + I  +
Sbjct: 1552 TEEKQLTHLHRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPKPLDVVAYCRNLVEEI--Q 1609

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            ++ NN ++  IS+ +  S   D + L  I   ++SNA+ +S   S V +K    +   +F
Sbjct: 1610 LNLNNKQVDFISEYQSMSCCMDEKLLGHILINLISNAIKYSPVNSNVQVKFYCRDQCAVF 1669

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             V + G  IP +    +F  F    + G   G GLGL+IV+  +++H G +S+SS+ E  
Sbjct: 1670 EVHDWGIGIPAEDITHLFESFYRAKNVGNILGTGLGLAIVKKCVDVHEGEISVSSNSEIG 1729

Query: 782  TTINCRIPSKE 792
            T     IP K+
Sbjct: 1730 TLFTVNIPLKQ 1740


>gi|290473792|ref|YP_003466666.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus bovienii
           SS-2004]
 gi|289173099|emb|CBJ79872.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus bovienii
           SS-2004]
          Length = 921

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 137/251 (54%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+++  V+ E++L E   A  +A++ K+ F+  VS+ELR+PL  IIG  +LL++    +
Sbjct: 420 LVDISTRVKMEQSLQEMASAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSH---T 476

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L S+ ++ +  ++ +S++LL +++DILD + +++  +K++       +++  V  +    
Sbjct: 477 LPSESARLLSAMNNASSLLLKIISDILDFSKIESKQLKIDSKKFSCKEIVLHVISNYLPL 536

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    +  +   +  D  RL QI S +L+NA+ F+  GS VI  + + +  +I
Sbjct: 537 IVKKELGLYCYIEPDIPDIINNDPVRLQQIISNLLNNAIKFTETGSVVITISIKHSYLYI 596

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSD 778
            S+K+ G  I + +   +F  F   NA++    +G GLGL+I E  INL  G +   S  
Sbjct: 597 -SIKDTGVGIEDKLQTQLFEPFFQINANKQTFSQGTGLGLAICEKLINLMDGDIEFISQQ 655

Query: 779 EGVTTINCRIP 789
              +  + R+P
Sbjct: 656 YIGSIFSIRLP 666


>gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
          Length = 919

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 12/229 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT  ++KT     L++ Q  Y+  I  S+  LL
Sbjct: 282 QEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKTP----LSATQIDYLHTIERSANNLL 337

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L +   +L + ++EV   +A   H+  + + + + +      
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHV 397

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           + D  RL Q+ + +L NA+ F+ KG+  I    R       +    V + G  I E    
Sbjct: 398 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTAQAVELEVQVHDTGIGISERQQS 457

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            +F  F        RR  G GLGL I +  IN  GG ++  S     +T
Sbjct: 458 QLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGST 506


>gi|251780024|ref|ZP_04822944.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243084339|gb|EES50229.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 664

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 136/258 (52%), Gaps = 16/258 (6%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT- 596
           TF+     +     L  +N+ L  A   + +K  F  ++S+E ++PL  I+    L+++ 
Sbjct: 371 TFIMTGKDITNYNKLALENKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESY 430

Query: 597 -SKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
             K   +  KQS  +YV  +  +S  LL LVN+++D+  +D G  K+N     + +++ E
Sbjct: 431 IKKFDDMLEKQSMGKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEE 490

Query: 654 VKQSIA--TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  S+A  TK  E NI     +D +      D +++ +I   ++SNA+ ++ K   + + 
Sbjct: 491 IVLSVAEYTKNKERNIIFD--TDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVN 548

Query: 712 AARD--NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
            + +  + + I SVK+NG  IP++  + +F RF  V N+      G G+GLS+V+S + +
Sbjct: 549 ISTNLHDNEVIISVKDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEM 608

Query: 768 HGGHVSISS-SDEGVTTI 784
           H G + I+S SDEG   I
Sbjct: 609 HEGKIWINSESDEGTEII 626


>gi|297564622|ref|YP_003683594.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296849071|gb|ADH62086.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 365

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 7/219 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL K ++ +   +  V++ELR+PL  + G+ + L     G L  +Q+ +   I+     
Sbjct: 131 EALEKVEQSRVELIGSVAHELRTPLAGLQGYAEALAD---GVLPPEQAAH--RIAHEVRA 185

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+  ++ V+AG +++    +   + L +  +       E  + +++    +L  
Sbjct: 186 MRRLVEDLSLVSRVEAGAVEIRPQPLDPAEALRQAAERFELVFAEQGVALRLDVPPRLPP 245

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +RL Q+ S +L+NA+  +  G  V+L+A        FSV++ G  IP +    VF
Sbjct: 246 VWADLERLQQVLSNLLANALRHTPSGGEVVLQAGLVPSGVCFSVRDTGPGIPPEHQARVF 305

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  V +A   Q  G G+GL+I +  +   GG + + S
Sbjct: 306 ERFYRVDSARSRQDGGSGVGLTIAKGLVEAMGGTMGLRS 344


>gi|225677104|ref|ZP_03788106.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590863|gb|EEH12088.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 472

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 5/234 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613
           L +  EAL + +  K  F   V++ELR+PL  IIGF +L+K   LGS+ NS+  +Y + I
Sbjct: 223 LQQIKEALEQENANKLKFFASVTHELRTPLNAIIGFAELIKNETLGSMDNSQYKEYADDI 282

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             + T LL L+ND+LD +  ++  + +      LN +++     +  K+ E  I +K   
Sbjct: 283 YNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIVDSCINMLLPKLRETEINLKKEI 342

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIP 731
             K    +AD +R+ Q+   +LSN++ F+ KG  +  ++K   +         +NG  I 
Sbjct: 343 PNKQLLVIADPKRMKQVIINLLSNSIKFTPKGGLIRMVVKENIEKNLLTIEFHDNGIGIM 402

Query: 732 EDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +     V + F   A  G R  G G+GL + +  + L GG   I S  +  TTI
Sbjct: 403 QQDIYKVMSVF-GQADSGYRNEGTGIGLPLSKKLVELMGGTFDIKSEAKLGTTI 455


>gi|254507496|ref|ZP_05119630.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219549566|gb|EED26557.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 787

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   L  +Q  +
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---LTEEQRHH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  S +   + + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELYPSALNFENFVAEIESISALMATQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L S +  D  RL Q+   ++SNAM F+ +G  V+  +A     F      V++
Sbjct: 381 DLERLSSLPSEIEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAEMEDAFATITMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +G  IPE   + +F  +    S        G G+GL++ +  IN+  G +++ +S+EG  
Sbjct: 441 SGIGIPEAELEKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-TSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|222529444|ref|YP_002573326.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456291|gb|ACM60553.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
          Length = 467

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN         +++ + +   +TEK E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPNNSDD----EISELISSFNYMTEKLENL---EMMRKSFISNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKKDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    AD+  + ++   +L NA+ ++  G  + +
Sbjct: 327 IVEELIKFEKRIEEKEIDVTLQVDEEL-VVKADKDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF   +  R    GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPERLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGV 781
            ++ +  S+EGV
Sbjct: 446 QNIWV-ESEEGV 456


>gi|188590708|ref|YP_001921035.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500989|gb|ACD54125.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 664

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 136/258 (52%), Gaps = 16/258 (6%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT- 596
           TF+     +     L  +N+ L  A   + +K  F  ++S+E ++PL  I+    L+++ 
Sbjct: 371 TFIMTGKDITNYNELALENKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESY 430

Query: 597 -SKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
             K   +  KQS  +YV  +  +S  LL LVN+++D+  +D G  K+N     + +++ E
Sbjct: 431 IKKFDDMLEKQSMGKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEE 490

Query: 654 VKQSIA--TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  S+A  TK  E NI     +D +      D +++ +I   ++SNA+ ++ K   + + 
Sbjct: 491 IVLSVAEYTKNKERNIIFD--TDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVN 548

Query: 712 AARD--NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
            + +  + + I SVK+NG  IP++  + +F RF  V N+      G G+GLS+V+S + +
Sbjct: 549 ISTNLHDNEVIISVKDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEM 608

Query: 768 HGGHVSISS-SDEGVTTI 784
           H G + I+S SDEG   I
Sbjct: 609 HEGKIWINSESDEGTEII 626


>gi|160935145|ref|ZP_02082528.1| hypothetical protein CLOBOL_00040 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441876|gb|EDP19573.1| hypothetical protein CLOBOL_00040 [Clostridium bolteae ATCC
           BAA-613]
          Length = 493

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624
           + +K++ ++ +S++LR+PLT I G    L    LG ++       ++ I + S  L  +V
Sbjct: 263 ERLKSTLLRSISHDLRTPLTGITGSAGFL-LDNLGIMDEATIKSMLKDICSDSEWLSTMV 321

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ++L+L  +  G + +N    V++DL+    + ++ ++  + ++++   D  L S   D 
Sbjct: 322 ENLLNLTRIQEGRLDINKKKEVVDDLVASAVRLVSNRVGNHTLKMETPEDILLVS--VDG 379

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +  +Q+   +L NA   S  G+TV L+  +D     F V +NG  IP D    +F+ F +
Sbjct: 380 RLFIQVLVNLLDNAFRHSGTGTTVTLRVKQDGNCLKFVVSDNGIGIPNDKIDKIFDNFFT 439

Query: 745 NAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            A+    ++RGVGLGL+I ++ +   GG +   +S +G       +P ++
Sbjct: 440 TAYENGDKQRGVGLGLTICKAMVEAQGGTIRAFNSPQGGAVFEVAMPMED 489


>gi|160941698|ref|ZP_02089025.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613]
 gi|158435195|gb|EDP12962.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613]
          Length = 1301

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 12/219 (5%)

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            + K  F+  +S+E+R+PL  I+G T + +   +     +  + ++ +  S+  L++L+ND
Sbjct: 927  QAKTDFLSRMSHEIRTPLNAIVGMTSIARN--VADDRDRVLECLDKLETSNQYLISLIND 984

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
            ILD++ +++G M+LN   + + D +  ++  +  +  +  +R  V +    G + V DR 
Sbjct: 985  ILDMSRIESGKMELNVQPMDMEDFVRSLEGMMRPQAEQKGLRFIVENRCCQGLALVTDRL 1044

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFN 740
            RL Q+   I+ NA+ F+ +G  VI     + G        FSVK+ G  I  +   S+FN
Sbjct: 1045 RLEQVLINIIGNAVKFTGEGGDVIFSITPEEGSSGGQRLTFSVKDTGIGIASEAMDSIFN 1104

Query: 741  RFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISS 776
             F   A +    +  G GLGL+I    + + GG + + S
Sbjct: 1105 AF-EQAEKNTSVKYGGTGLGLAISSRLVQMMGGTLGVRS 1142


>gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|325958983|ref|YP_004290449.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330415|gb|ADZ09477.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 769

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  + F +++  VR E  L E    L+  +     F    S++L+ PL  I  F  LL+ 
Sbjct: 519 QFAVIFNDISQRVRIENELKETLRQLKLTNSELKQFAYIASHDLKEPLRVITSFLQLLQR 578

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+    +++ +    +  L  L++D+L+ + ++       ++ +   D+L  V+ 
Sbjct: 579 RYKDQLDEDADEFINFAVDGAIHLHELIDDLLEYSKINT--RSDEFTCVDFEDVLKIVET 636

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++   + ENN+    I+ GKL    AD+ +++Q+F  +++N++ + S  S  I  +A +N
Sbjct: 637 NLDILIKENNV---FITSGKLPKIRADKTQMIQLFQNLINNSIKYRSVKSPEIHISATNN 693

Query: 717 GD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           GD +IFSV++NG  IP    K +F  F       +  G G+GL+I +  +  HGG + + 
Sbjct: 694 GDKWIFSVEDNGIGIPSKYSKQIFKIFKRLHDSYEYNGTGIGLAISKRIVEKHGGTIWVD 753

Query: 776 SSDEGVTTINCRIPS 790
           +     T  N  I S
Sbjct: 754 TERINGTKFNFTIRS 768


>gi|302877626|ref|YP_003846190.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580415|gb|ADL54426.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 834

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 127/253 (50%), Gaps = 12/253 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  ++++AL    E      + K+ F+ ++S+E+R+P+  +IG ++L     L S +
Sbjct: 429 DITELKQSQQALQRAKEVAESLAQSKSEFLANMSHEIRTPMNAVIGLSEL----ALDSTD 484

Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             + Q +++ I+ SS  L+ ++NDILDL+ ++A  + +      L +LL+ +++      
Sbjct: 485 PAEKQSHLQQINDSSRSLMGILNDILDLSKIEAHQLSVEKIQFNLTELLDSIQRIFTLSA 544

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
              +I   V+ D  +    + D  RL QI + +L NA  F+ KG   +    ++   D+ 
Sbjct: 545 AGCDIEFNVVRDADIHQLLLGDPLRLRQILTNLLGNAFKFTQKGRVTLNVSKIENTTDST 604

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              FSVK+NG  + +    ++F  F        RR  G GLGL+I  +   L GG + + 
Sbjct: 605 TLRFSVKDNGIGMSDGQVSTLFQPFSQADSSISRRFGGTGLGLTISRNLAQLMGGDIKVE 664

Query: 776 SSDEGVTTINCRI 788
           S     +T +  +
Sbjct: 665 SQAGAGSTFSVEL 677


>gi|229506132|ref|ZP_04395641.1| sensor protein TorS [Vibrio cholerae BX 330286]
 gi|229356483|gb|EEO21401.1| sensor protein TorS [Vibrio cholerae BX 330286]
          Length = 984

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L + Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|229178879|ref|ZP_04306239.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|229190641|ref|ZP_04317637.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228592774|gb|EEK50597.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228604644|gb|EEK62105.1| Sensor histidine kinase [Bacillus cereus 172560W]
          Length = 312

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 201 DGEKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311


>gi|162448476|ref|YP_001610843.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Sorangium cellulosum
           'So ce 56']
 gi|161159058|emb|CAN90363.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Sorangium cellulosum
           'So ce 56']
          Length = 1143

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 10/236 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISAS 616
           + EAL + D  K +F  +VS+E R+PLT ++G   D L +++     S     +E    +
Sbjct: 344 RAEALAELDRAKTTFFSNVSHEFRTPLTLMLGPLEDALASAE----RSLSGADLETAHRN 399

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL LVN +LD + ++AG ++ +Y    L+ L  ++  +  + M    +  +V     
Sbjct: 400 AVRLLKLVNALLDFSRIEAGRIQASYEPTDLSALTADLASAFRSAMERAGLAFEVDCPAL 459

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMC 735
                 D     +I   +LSNA+ F+ +G+  I L+A  D  D   +V++ G+ IPE   
Sbjct: 460 PEPIYVDHDMWEKIVLNLLSNALKFTFEGTVSISLRAHGDRAD--LTVRDTGTGIPEREL 517

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F RF  V  A      G G+GL++V   + LHGG + ++S     T+    +P
Sbjct: 518 SHLFKRFHRVQGARSRTHEGSGIGLALVHELVRLHGGTIHVTSELSVGTSFTVSLP 573



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 113/236 (47%), Gaps = 15/236 (6%)

Query: 539  MLTFVNVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            M+    +TD V A R + + ++       AL K ++  + F    S++L++PL  I   +
Sbjct: 885  MVVAFEITDQVLARRRIEQLSQHREELIAALAKTNQELDQFAYVASHDLKAPLRGIANLS 944

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            + ++ S  G L+ +  +++  +      L  L++ IL  +   AG ++ +  ++    LL
Sbjct: 945  EWIEESLAGKLDGETQEHIHLLRGRVRRLEALIDGILHYSR--AGRLRGDVVSVDTGHLL 1002

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             EV + ++        R+ +     + +  A+R  + Q+F  ++SNA+  + +    +  
Sbjct: 1003 AEVVELLSPP---EGARVDIAP--GMPTIAAERVPMQQVFQNLISNALKHARRSDARVEV 1057

Query: 712  AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
               D G ++ F+V +NG  I  +  + +++ F +   R +  G G+GLS+V+  + 
Sbjct: 1058 TCEDAGAYVEFAVSDNGPGIAPEYHERIWDLFHTLESRDKVEGTGIGLSVVKKIVQ 1113


>gi|123475358|ref|XP_001320857.1| ATPase [Trichomonas vaginalis G3]
 gi|121903671|gb|EAY08634.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 1077

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 147/301 (48%), Gaps = 19/301 (6%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--MLTFVNVTDSVRAERAL 555
           ++F+A  T   D +K       ++ ++V  +SI  + +  T  +L  +++T +  AE  L
Sbjct: 536 NVFSAFKTCIAD-KKPFSIDAPVMMNTVRWFSIRGIRSGPTSILLLMIDITATKNAEEHL 594

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             +      A   K  F+ ++S+E+R+PL  + G  +LL ++ +     K S  +E +S 
Sbjct: 595 RIEKARFVDAATAKTRFLANMSHEIRNPLNGMSGLLELLMSTDVV---QKYSDNMEILSD 651

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKV 671
           S   LL L+NDILDLA ++   M  +++      VL D LN+  +  A    +N I    
Sbjct: 652 SFQSLLELLNDILDLAKIEQNQMHPSFTDFDPLQVLADSLNKQMKQAA----KNGILFNP 707

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           I D KL + V  D     ++ S ++SNA+ F+ KGS  I  ++ DN   I  + + G  I
Sbjct: 708 IIDPKLATVVHGDPHIFARVASNLVSNAVKFTKKGSITISVSSDDNLKLI--IADTGIGI 765

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             D  + +F  F+   +   R   G+G+GL++V   + L  GH+++ S     TT     
Sbjct: 766 SHDFQQKIFGIFLQGDNSITRSYGGIGVGLALVNKMLQLINGHITLKSDTGRGTTFTITF 825

Query: 789 P 789
           P
Sbjct: 826 P 826


>gi|121608695|ref|YP_996502.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter
           eiseniae EF01-2]
 gi|121553335|gb|ABM57484.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter
           eiseniae EF01-2]
          Length = 1195

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 13/255 (5%)

Query: 537 QTMLTFVNVTDSVR--AERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFT 591
           Q + T   V +  R  AE+A      A R AD+    K+ ++  +S+ELR+PL +I+G+ 
Sbjct: 688 QALQTARQVAEQARLAAEQARQVAEAAQRAADQANQAKSRYISAISHELRTPLNSILGYA 747

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L+       L  ++ Q V  I      LL+L+   LD+A +++G + L  + +   D L
Sbjct: 748 QLMSEDP--GLPPQRQQAVHVIRRGGEHLLSLIEGTLDIARIESGKLTLEVAPMRFADGL 805

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVI 709
            E+      +     +  +    G L   V AD +RL QI   +L NA+ F+++G  T+ 
Sbjct: 806 REMASLFELQAAAKGLAFRFEPQGALPEVVRADEKRLRQILINLLGNAIKFTTQGQVTLR 865

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           ++ AR+       V++ G  +     + +F  F + A      G GLGL+I +    L G
Sbjct: 866 VRHAREMAR--IEVQDTGPGLTASAIERIFEPF-TRAGAADTPGAGLGLTIAKMLTALMG 922

Query: 770 GHVSISSSDEGVTTI 784
           G +++ SS  GV ++
Sbjct: 923 GELTV-SSQPGVGSV 936


>gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 909

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 10/233 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K++F+ ++S+E+R+P+  IIG  DLL     GSLN+ Q   +  + +S+  LL L
Sbjct: 267 QANRAKSAFLANMSHEIRTPMNGIIGVADLLAA---GSLNAHQQNQLTTLRSSADTLLYL 323

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +NDILD + ++AG ++L      + + + +V    +    + ++ +    +  L  + V 
Sbjct: 324 LNDILDFSRIEAGGLQLEKLPFSIRETIEQVISVFSPTARKRHLDLWFDIEPSLPDYIVG 383

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD-NGD--FIFSVKNNGSSIPEDMCKSV 738
           DR RL Q+ + +L+NA+ F+  GS  I  ++ +D NG    +  + + G  I       +
Sbjct: 384 DRYRLGQVITNLLNNALKFTESGSVRISCRSQQDKNGQNRLLIEITDTGIGIIAQALADI 443

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ F    +   RR  G GLGL+IV   + L  G ++  S+    +T +  +P
Sbjct: 444 FSPFRQADNSMSRRFGGSGLGLAIVHDLVALMEGEITAKSTPGRGSTFSIDLP 496


>gi|88797996|ref|ZP_01113583.1| two component sensor kinase [Reinekea sp. MED297]
 gi|88779193|gb|EAR10381.1| two component sensor kinase [Reinekea sp. MED297]
          Length = 1120

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 11/237 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            VTD+     AL    E    A+  K+ ++  +S+ELR+PL +I+G+T LL      + +
Sbjct: 654 QVTDA-----ALQTAKELAENANAAKSRYLSGISHELRTPLQSILGYTQLLNDQPDTTPS 708

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+    +  I  S   L +L+  +LD++ ++AG + L+ +++   +L+ ++      +  
Sbjct: 709 SRTR--LNAIHRSGQYLADLIEGLLDVSKIEAGKLDLHLTSVAFPELVQQIADMFRMQAK 766

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              I  +    G L ++V  D +RL QI   +LSNA+ ++  G   +    R      F+
Sbjct: 767 AKGIEFRTDIQGTLPAWVKTDEKRLRQILINLLSNAVKYTDDGYVRLTLRYRSQVAE-FT 825

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           V++ G  I ED  + VF+ F  V N    +  G GLGL+IV+  + + GG + +SSS
Sbjct: 826 VEDTGHGIAEDQHQRVFSPFERVENEASSRIPGTGLGLTIVKLLVEIMGGDIQLSSS 882


>gi|308125497|ref|ZP_07663416.1| hybrid signal transduction histidine kinase J [Vibrio
           parahaemolyticus K5030]
 gi|308112027|gb|EFO49567.1| hybrid signal transduction histidine kinase J [Vibrio
           parahaemolyticus K5030]
          Length = 381

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 114/208 (54%), Gaps = 11/208 (5%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+ N  G   LL  +KL   + +Q ++VE I  SS  L+ +++DILD + V+A
Sbjct: 1   MSHEIRTPM-NAYGVASLLSDTKL---DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVEA 56

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694
           G ++L   T     LL++V      K  + N+++    D KL + V  D  RL Q+ + +
Sbjct: 57  GKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNL 116

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           LSNA+ F+ +G   +L +  +  + I    F V ++G  I ++  ++VF RF        
Sbjct: 117 LSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTT 176

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISS 776
           R+  G GLGL+I    +++ GG + ++S
Sbjct: 177 RKYGGTGLGLAICAQLVHIMGGDIKLTS 204


>gi|298245656|ref|ZP_06969462.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297553137|gb|EFH87002.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 737

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + N  L   + +K++ V  VS+E R+ LT+I GF+++L+ ++L    S+  +Y   I 
Sbjct: 502 LQKSNVRLELTNRMKSNLVSIVSHEFRTSLTDIQGFSEILQRNELNL--SEVREYATDIR 559

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L++L+ND+LDL  ++   ++L+ + + LN L+NE    +  +  ++  R+++   
Sbjct: 560 EDAQRLVSLINDMLDLDRLEMDHIQLHLNWLDLNALINEAVARMRRRTQKHTFRLQLAR- 618

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     DR++L+ +   +L NA+ +S  G  + + +  ++     SV + G  IP + 
Sbjct: 619 -ALPILWGDREKLMIVLINLLDNAIKYSPDGGAITVVSELEDLCVHISVSDQGVGIPPEE 677

Query: 735 CKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
            + VF R+       +   G GLGLSIV   I LHGG V + S+
Sbjct: 678 LEHVFERYKRLPFGPETVEGRGLGLSIVREIILLHGGKVWVESA 721


>gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|167552022|ref|ZP_02345775.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442848|ref|YP_002042586.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197250849|ref|YP_002148253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194401511|gb|ACF61733.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197214552|gb|ACH51949.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205323203|gb|EDZ11042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 778

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|163794214|ref|ZP_02188186.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199]
 gi|159180382|gb|EDP64903.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199]
          Length = 517

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 16/238 (6%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---ISASSTILL 621
           A+  K  F++ +S+ELR+PL  IIGF DL++T  LG +  +  +Y+E+   I  S   LL
Sbjct: 264 ANTSKTQFLRSMSHELRTPLNAIIGFADLMRTGILGPM--EHPRYLEFTHDIHDSGRHLL 321

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +++D+LD+A ++ G   L    + L+ L+++  +++     E  + + + +        
Sbjct: 322 KIIDDLLDIARIEVGQETLREEAVDLDALVSDCHRTVGPMAIERGLSLHIDATAPGLVLR 381

Query: 682 ADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDN----GDFIFSVKNNGSSIPED- 733
            DR ++ Q+   +LSNA+  + +G   S+ + ++  D     GD    V + G  +  + 
Sbjct: 382 IDRTKIKQVLLNLLSNAIKNTPRGGRVSSAVERSPTDGAGSTGDVELRVTDTGRGMTAEQ 441

Query: 734 --MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             M  + F R   +    Q +G GLGL +    + LHGG +++ S     T +  R+P
Sbjct: 442 IPMALTAFTRLDDDPMLPQ-KGTGLGLPLSRMMVELHGGALTLESEIGRGTQVTVRLP 498


>gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 914

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 10/213 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  I+GF+ L    +L     K   Y+E I  S+  LL ++NDILD +
Sbjct: 290 FLANMSHEIRTPMNAIVGFSRLALQDEL---PPKPRDYLEKIDQSAHSLLKIINDILDFS 346

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQI 690
            ++AG + +      L+++L+ V Q +A +  E  + +   +      + + D  RL Q+
Sbjct: 347 KIEAGKLTMEEVPFDLSEVLDNVGQMMAMRTEEKGLELLFALGPEVPPNLIGDPLRLSQV 406

Query: 691 FSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              + +NA+ F+ +G  V+     +   D  +  F++K++G  + E+    +F  F    
Sbjct: 407 LINLTNNAVKFTEQGEIVLQVSCPEPTADPVELQFAIKDSGIGMNEEQIARIFQPFTQAD 466

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
               R   G GLGLSIV   +   GG V +SS+
Sbjct: 467 DSTTRSYGGTGLGLSIVRRLVESMGGEVEVSST 499


>gi|300788745|ref|YP_003769036.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|15011030|gb|AAK77358.1|AF331073_2 histidine kinase [Amycolatopsis mediterranei U32]
 gi|7340668|emb|CAB83037.1| putative histidine kinase [Amycolatopsis mediterranei]
 gi|299798259|gb|ADJ48634.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 472

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 17/236 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E L   D  +  FV  V+++LR+PL ++I   D L  ++     + +++    + 
Sbjct: 247 LGESIEELHAKDRQQRRFVADVAHDLRTPLASMIATVDTLDHAE----PATRTRAAAILG 302

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  LV D+L++A  DAG   L  + + L DL       +A       +   V + 
Sbjct: 303 TQARRLAKLVEDLLEIARFDAGKADLRVAPVDLADL-------VADAAEVTGVEAAVTAS 355

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G + + VAD +R+  + + +LSNA    +   TV L    D  D +  V + G  +PED+
Sbjct: 356 GDV-TVVADPRRVHTVVANLLSNAAPHGAMPVTVTLDGTGD--DVVVRVADAGPGVPEDL 412

Query: 735 CKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF    H R    G GLGL+I    +  HGG  S++  ++G      R+P
Sbjct: 413 LPVLFDRFTRGDHARQATEGSGLGLAIARENVLAHGG--SLAVHNDGGAVFTVRLP 466


>gi|318061733|ref|ZP_07980454.1| two-component system sensor kinase [Streptomyces sp. SA3_actG]
          Length = 391

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 142/308 (46%), Gaps = 30/308 (9%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R++  +D +   A I T   ++   L G  E+L  +  +Y + P P    +   V++ D+
Sbjct: 99  RWWRLTDPYGGLA-IRTRQPEKNLLLPGGREILVSA--QY-VRPRPRGPLVRLVVSLRDT 154

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
               R  TE++ A           +  V++ELRSPLT++ GFT  L  +K    N  Q +
Sbjct: 155 --GARRRTERSHA---------ELIATVAHELRSPLTSVKGFTATL-LAKWERFNDDQKR 202

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENN 666
             +E + A +  +  L+ ++LD++ +DAG M+L    + +       V+  IA     + 
Sbjct: 203 LMLETVDADAHRVTRLITELLDISRIDAGRMELRRQPVDIAGAAARHVQAHIAAGRPCDR 262

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIF 721
             + V     L +  AD  ++ Q+ S +L NA+     G TV +  A   G       + 
Sbjct: 263 FVVTVRR--PLPALWADPDKVDQVLSNLLENAVRHG--GGTVTIDIAPTAGGEGPEGTVI 318

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +V + G  IPE+    VF RF   + RG   G GLGL IV+  + +HGG +++  +  G 
Sbjct: 319 TVSDEGQGIPEESMNRVFTRFWRGSKRG---GTGLGLYIVKGIVEVHGGWITVGRAPRGG 375

Query: 782 TTINCRIP 789
                 +P
Sbjct: 376 ARFRFMLP 383


>gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|299534473|ref|ZP_07047806.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298730101|gb|EFI70643.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 438

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 5/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+  +++ELR+PLT I G+TD+L    L      + +Y+  I   +  L  L+ D+ 
Sbjct: 208 RKEFLSSIAHELRTPLTFIKGYTDILAKRDLTE--QDRQKYLAIIIEETNRLSRLIKDLF 265

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +D     +    + L      +++ ++    +  I + V  D  L +  AD  RL 
Sbjct: 266 DLAKMDENSFVIEKHYLHLEPFFTSIEEKLSPAFQDKGIYLVVRCDSGL-TLYADEARLE 324

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           QI   +L+NA+ + + G    +   +D+G    +V++ G  IP+     +F+RF  V  +
Sbjct: 325 QILINLLNNALIYCAPGDMTTVTVKKDSGTLSITVEDTGKGIPKKDLPYIFDRFYRVEKS 384

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 G GLGL+IV+  +  HGG + + S
Sbjct: 385 RSRALGGSGLGLAIVKELVQAHGGEIKVRS 414


>gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 10/234 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L +  EA       K++F+ + S+E+R+P+  IIG  +LL  ++   L+ KQ ++
Sbjct: 356 RMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLLLGTR---LSDKQLEF 412

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +  S+  L+ ++NDILD + +DAG   L      L  +LN   + +     +  + +
Sbjct: 413 VRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQKGVEL 472

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVK 724
            ++    +  F+  D  RL Q+ + ++ NA+ F+ +G   +     +  D   +I FSVK
Sbjct: 473 ILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDFLSESDGVAYIRFSVK 532

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  +     + +F  F        RR  G GLGL+I    I L GG +S+ S
Sbjct: 533 DTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVES 586


>gi|228926141|ref|ZP_04089217.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228833506|gb|EEM79067.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 896

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|167894658|ref|ZP_02482060.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 7894]
 gi|167911299|ref|ZP_02498390.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 112]
          Length = 351

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  +  + + D  RL QI   ++ N + ++ +G   +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|126348165|emb|CAJ89886.1| putative two-component system sensor kinase [Streptomyces
           ambofaciens ATCC 23877]
          Length = 503

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 9/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +     F   VS+ELR+PL  +   TD+L     G L+   +  V  IS  +T L 
Sbjct: 258 LRRMEAGARRFAADVSHELRTPLAAMSAVTDVLDEDAAG-LDDDTAMAVRLISEETTKLA 316

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV+D+++++  DAG   L+   I   DL   +++++A++   + +   +   G L   V
Sbjct: 317 GLVDDLMEISRFDAGAAALHLDEI---DLAESLRRTLASRGWLDTVETDLPEPGTLRGRV 373

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSV 738
            D +RL  + + +++NA+   +    + L+     R     + +V + G+ IP+D+   V
Sbjct: 374 -DPRRLDVVVANLVANALRHGAPPVRLSLRQEDDPRAGRRAVVTVADGGAGIPDDVLPHV 432

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  S++ R +  G GLGL+I    + LHGG V  ++   G       +P
Sbjct: 433 FDRFYKSDSARTRSEGSGLGLAITTENVALHGGTVRAANHPRGGAVFTVVLP 484


>gi|118476618|ref|YP_893769.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196044360|ref|ZP_03111596.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225862944|ref|YP_002748322.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|229183305|ref|ZP_04310534.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
 gi|118415843|gb|ABK84262.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196024999|gb|EDX63670.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225788896|gb|ACO29113.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|228600175|gb|EEK57766.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
          Length = 896

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMATSMQQNFLHIAAQKNVEFTVENS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|94314629|ref|YP_587838.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus
           metallidurans CH34]
 gi|93358481|gb|ABF12569.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus
           metallidurans CH34]
          Length = 1040

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 10/254 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+  +    L    +    A+  K++F+  +S+E+R+P+  I+G  +L    K   
Sbjct: 619 WIDMTERQQMVTELASAKDRAEAANRAKSAFLASISHEIRTPMNAILGMLELTLQDK--R 676

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L       VE    S+  L+ L++DILD + ++AG   L      L  L+ +V       
Sbjct: 677 LPDDDRLQVETAQESAKSLIGLIDDILDASKMEAGKFVLTPQPAPLRQLIGDVTSLFGLA 736

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDN 716
                ++++ I D  +    + D  R  Q+ + ++SNA+ F+ +GS VI   A     D 
Sbjct: 737 ASRKGVQLEAIVDDAVAPCHMVDPLRFKQVLNNLVSNAVRFTDRGSVVIRLGATNLTPDC 796

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               FSV + G+ IPED  K +F  F  + +  R    G GLGLSI +  +    G + I
Sbjct: 797 QSLTFSVSDTGTGIPEDGLKKLFQPFTQIGDTKRSA-GGTGLGLSICQRLVTKMHGTIGI 855

Query: 775 SSSDEGVTTINCRI 788
           +S     TT+   I
Sbjct: 856 TSEVGKGTTVTATI 869


>gi|296453866|ref|YP_003661009.1| integral membrane sensor signal transduction histidine kinase
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183297|gb|ADH00179.1| integral membrane sensor signal transduction histidine kinase
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 344

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 13/234 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  E    L  AD+++   + +VS+ELR+P++ +    + +       +       +E 
Sbjct: 103 RSFNEMAGELEHADKMRRDMIANVSHELRTPVSALQAMVENMADG----VTEPTPANLES 158

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN       D L+E  +   IA   H ++IR+ 
Sbjct: 159 ILTQTQRLSDLIAFLLDLSRMEAGAASLNIEKFNFADFLDETIEPLEIADGGHAHDIRVT 218

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGS 728
           V +D    S   D+ RL Q+F+ I++NA+  S+ G+TV++ A  D+  G  + +V N GS
Sbjct: 219 VPADI---SMEGDQDRLRQLFTNIIANALKHSADGTTVLVDAHEDDSQGTIVTNVVNFGS 275

Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            I       +F RFV        +  G GLGLSI      LHGG V +     G
Sbjct: 276 QIAPSDRSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVKVVDDTRG 329


>gi|294495905|ref|YP_003542398.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666904|gb|ADE36753.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 554

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 119/233 (51%), Gaps = 4/233 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L+  D++K+ F+ ++++EL++PL +I GF+DLL   +LG LN  Q +    +  ++  
Sbjct: 321 EDLKHLDKLKSEFLANLTHELKTPLISIKGFSDLLDKGRLGELNEDQKKANLAVVRNADR 380

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L++ +L ++    G  +  +  + + +++ +    +       ++ I +    K   
Sbjct: 381 LKRLIDSLLYMSMEKEGKYQYQFEELDVGEIITDAMDKMKVHTEGKDVDIGIDIQNKSYL 440

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
              DR RL  +F  IL NA  F +KGS  I    ++  ++I   +K+NG  IP++    +
Sbjct: 441 TCGDRDRLTNVFLNILDNASKF-TKGSGRIKITLKEEEEYIRIKIKDNGIGIPKEKIPRI 499

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ F        R   GVG+GL I +  I++H G +   S +   TT++ ++P
Sbjct: 500 FDMFYQIDGSTTRIYNGVGMGLYICKKVIDIHNGSIWARSMEGLGTTVHVKLP 552


>gi|295690578|ref|YP_003594271.1| response regulator receiver sensor signal transduction histidine
           kinase [Caulobacter segnis ATCC 21756]
 gi|295432481|gb|ADG11653.1| response regulator receiver sensor signal transduction histidine
           kinase [Caulobacter segnis ATCC 21756]
          Length = 379

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 127/248 (51%), Gaps = 36/248 (14%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----TSKLGSLNSKQSQYVEYISA 615
           +ALR+AD  K++F+  +++ELR+P+  + G   LLK      +   + ++  + +++++ 
Sbjct: 147 QALRRADRHKDNFLAVLAHELRNPVAALGGGLHLLKKDIPPERAHDIRTRMERMLDHLT- 205

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----------KQSIATKMHE 664
                 +LV+D+LD++ V  G + L  + I L ++L                S  T++ E
Sbjct: 206 ------HLVDDLLDVSRVSQGKIVLKKARIELGEVLQSAIDASQHNLEAAGHSFVTELPE 259

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             I +    DG       D  RL QI S +L+NA  ++  G TV LKA    G    +V 
Sbjct: 260 QPIWL----DG-------DHTRLAQIVSNLLNNAAKYTPSGGTVSLKAEASGGWATITVS 308

Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV- 781
           + G  +P DM   +F  F     H G+ + G+G+GL++V+  ++LHGG ++++S+ E   
Sbjct: 309 DTGVGVPADMQSRIFEIFAQVEDHLGKAQGGLGIGLALVKQLVSLHGGVITVTSAGENRG 368

Query: 782 TTINCRIP 789
           +    R+P
Sbjct: 369 SAFTVRLP 376


>gi|257468826|ref|ZP_05632920.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 620

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 33/349 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI-----RNIAATCSRYYNES 494
           ++ +S+G+ V   + +I L N A   L   EE+ L   + +     R I  + +   N +
Sbjct: 277 VESISDGIIVTDKENKILLINNAAEKLLNVEESELLDKSFLTAIPNRKIYDSITEVKNNN 336

Query: 495 DGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           D       I ++F     SL   +E  +   V   SII   N + +     + D  +   
Sbjct: 337 D-------IKSTFKQLEISLNSNVEKNIYCRVFINSIIG-KNKENLGIVTLLQDITK--- 385

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                   L++ D++K+ FV  VS+E R+PLT++    +LL    +G++N  Q + ++ I
Sbjct: 386 --------LKEIDQMKSDFVSTVSHEFRTPLTSMGMAVELLGDGSVGTINETQKELLKVI 437

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-- 671
              +  L  L+ D+LDL+ +++G   + +    +  ++     S+       N++I++  
Sbjct: 438 KEDNERLNFLIRDLLDLSRLESGKTHMKFEECSIKKIVETAVNSLKNFSENRNVKIEIRN 497

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVKNNGSS 729
           I D  L    AD  ++L + + +L+NA+ + S  +   +I++A +   + + SVK+NG  
Sbjct: 498 IKDSFL--VFADLNKILLVLTNLLTNAIKYKSEEREGNIIVEAFKKGKNIVVSVKDNGKG 555

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPE+  + +FN+F  V  ++ G+  G GLGLSI +  I  HGG + + S
Sbjct: 556 IPEEYKEKIFNKFIQVKISNDGKIEGTGLGLSICKEIIKAHGGEIWVDS 604


>gi|212711105|ref|ZP_03319233.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM
           30120]
 gi|212686273|gb|EEB45801.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM
           30120]
          Length = 781

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    EAL  A   K +F+  +S+ELR+PL  I+G + +L  +KL     +QS Y
Sbjct: 264 RDITERKRYQEALENASREKTTFISTISHELRTPLNGIVGLSRILLDTKL---TKEQSSY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ ND++++  ++   ++L+   ++L + +N+++      +    ++ 
Sbjct: 321 LKTIHVSAVTLGNIFNDVIEMDKIERRKVQLDNQPVMLPEFVNDLENLSGLLVQPKGLKF 380

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            + ++ G   + + D  RL QI   ++ NA+ F+ KG   +      +   IF VK++G 
Sbjct: 381 VMDVAHGLPKTILTDGTRLRQILWNLIGNAVKFTQKGEVKLSIWREADNKLIFQVKDSGI 440

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            IP+D    +F  +  V ++  G+   G G+GLS+        GG + + S
Sbjct: 441 GIPKDELDKIFAMYYQVRDSAGGRPATGTGIGLSVSRRLAQSMGGDIRVES 491


>gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207747|gb|EFZ92693.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|29346404|ref|NP_809907.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338300|gb|AAO76101.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 499

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++       +++ +V 
Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS +S  L+ L++D+LDL+ +++  +K  ++   L  L+ +V++    K   + I I+ 
Sbjct: 316 LISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKEQTMKPI-SEIEIRA 374

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNG 727
           +   +      D  RL Q+ S  ++NA  F+ KG  +    A D+ D     +F V++ G
Sbjct: 375 LLPNEDVYINTDATRLKQVISNFINNARKFTEKGY-IHFGYAVDSVDASSVHVF-VEDTG 432

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           S IP++  K +F+RF       Q  G GLGLSI ++ +    G +S+ S
Sbjct: 433 SGIPKECQKEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDISVES 479


>gi|302662555|ref|XP_003022930.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
 gi|291186903|gb|EFE42312.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
          Length = 2406

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 22/234 (9%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+ ++S++LR+P+T +IG ++LLK +KL   + KQ  YVE I   +  LL L+
Sbjct: 1882 AAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQDVYVESIRVCADTLLTLI 1938

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF---- 680
            NDILD + ++AG MK++   I L   + EV +++     E    +  I D  L S     
Sbjct: 1939 NDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG--LNTIED--LDSIDPDL 1994

Query: 681  --VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
              + D  RL QIF  +LSN+  F+  GS  +     ++          V + G  I E+ 
Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2054

Query: 735  CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
               +F  F S A     R   G GLGLSI ++ I ++ GG + + S +   TT+
Sbjct: 2055 LVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTV 2107


>gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1]
 gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 535

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 8/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A E K+ F+ ++S+E+R+PL  I GF  LL+ ++    +  + +Y++ +  SS  LL +
Sbjct: 161 EATEQKSRFLANMSHEIRTPLNAITGFIKLLEENEK---DETKLKYLKIVENSSESLLQI 217

Query: 624 VNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           +NDILD++ +++G +M   Y+     DL+  + +   T+  E NI  ++  +  +   + 
Sbjct: 218 INDILDISKIESGNLMIEPYNFNPYEDLIM-IAELFQTRAAEKNIIFQIRYNNNMPKILF 276

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  R+ QIF+ +LSNA+ F+ +GS V       NG     VK+ G  I E   K++F  
Sbjct: 277 GDALRIKQIFTNLLSNAIKFTPEGSVVKCIIWYKNGQLNIRVKDYGIGISEKKQKAIFEP 336

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+       R   G GLGLSI      + GG +++ S  E  +     IP
Sbjct: 337 FMQADSSTVRNYGGTGLGLSISLELTRMLGGTLTLKSEKEKGSIFTLSIP 386


>gi|91772717|ref|YP_565409.1| external sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711732|gb|ABE51659.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 592

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 129/245 (52%), Gaps = 6/245 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+   L   N+ L++ D +KN FV  VS+EL++PLT +   ++ L+ S+       + + 
Sbjct: 339 RSNDYLQNANKKLKELDRLKNDFVSMVSHELKTPLTAMKTSSEFLRESECS--REIKEEM 396

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +      +V+D+LD++ +++G MK     + + +++     ++     + +I+I
Sbjct: 397 LDLIIRNIDRQARMVDDLLDISRIESGKMKFTPEDVNIKEIIEISLHNVTKHAKDKSIKI 456

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
            V     + +   D+ +L++IF  +L+NA+ F+ +   V +    D+ D++  S+K+NG 
Sbjct: 457 MVNCPDDVPAISTDKDKLIRIFVNLLTNAIKFTPEEGEVTV-IVEDHEDYLQTSIKDNGI 515

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F++F        R+  G GLGL+I++  I+  GG + + S     +T   
Sbjct: 516 GILEEKRDKIFDKFYQVDSTATRKAGGTGLGLAIIKGIIDGQGGKIYLESETGKGSTFTF 575

Query: 787 RIPSK 791
           R+P +
Sbjct: 576 RLPKE 580


>gi|330910759|gb|EGH39269.1| sensor protein torS [Escherichia coli AA86]
          Length = 900

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D      
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTVL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRIDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRVP 651


>gi|304385328|ref|ZP_07367673.1| sensor histidine kinase [Pediococcus acidilactici DSM 20284]
 gi|304328535|gb|EFL95756.1| sensor histidine kinase [Pediococcus acidilactici DSM 20284]
          Length = 480

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E N+ +++ +E + +F+   ++E+R+PLT I G  + L+   +   + ++S  +  
Sbjct: 240 KSLKESNDEIKRQEERRRAFMADAAHEMRTPLTTINGLLEGLEYDAIPEDSKEES--IRL 297

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L+ LVND LD   +    +KL+   + L   +  V + +  K  + N ++ V 
Sbjct: 298 MQRETKRLIRLVNDNLDYERIRTNKIKLDCQMVNLKQAVLRVVEQLGKKAEKENDQLIVE 357

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +  +  + AD  RL+QI   I+ N + F+  G   +      +G  I  + +NG  + E
Sbjct: 358 MNSDVVVY-ADPDRLIQILFNIVQNGIQFTQNGQITVRAQNASDGTNI-QISDNGIGMTE 415

Query: 733 DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D  K+++ R+  ++A R Q +G  GLG++IV   + +HGG + +SS+    TT     P
Sbjct: 416 DQIKNIWERYYKADASRIQTKGESGLGMAIVHELVQIHGGKIEVSSAPGRGTTFKLHFP 474


>gi|302504154|ref|XP_003014036.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
 gi|291177603|gb|EFE33396.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
          Length = 2418

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 22/234 (9%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+ ++S++LR+P+T +IG ++LLK +KL   + KQ  YVE I   +  LL L+
Sbjct: 1890 AAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQDVYVESIRVCADTLLTLI 1946

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF---- 680
            NDILD + ++AG MK++   I L   + EV +++     E    +  I D  L S     
Sbjct: 1947 NDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKG--LNTIED--LDSIDPDL 2002

Query: 681  --VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
              + D  RL QIF  +LSN+  F+  GS  +     ++          V + G  I E+ 
Sbjct: 2003 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2062

Query: 735  CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
               +F  F S A     R   G GLGLSI ++ I ++ GG + + S +   TT+
Sbjct: 2063 LVRLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTV 2115


>gi|223937764|ref|ZP_03629665.1| GAF sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223893557|gb|EEF60017.1| GAF sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 2077

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 129/262 (49%), Gaps = 20/262 (7%)

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            T+  +A +AL EK + L    + K+ F+ ++S+ELR+PL +++   D L  +  G+L  K
Sbjct: 1636 TEVEQARQALEEKAKQLALTSKYKSEFLANMSHELRTPLNSLLILADQLAHNVEGNLTPK 1695

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q ++ + I AS   LL+L+NDILDL+ +++G + L+   +   +L + V+++        
Sbjct: 1696 QIEFSKTIHASGNDLLSLINDILDLSKIESGTVTLDIIEMRFIELQDYVRRTFNHVAESK 1755

Query: 666  NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--------------- 709
            ++   V  D +L    + D QRL Q+   +LSNA  F+ +G   +               
Sbjct: 1756 SLEFDVELDSELPRHMLTDSQRLEQVIRNLLSNAFKFTERGGVTLSIALVTEGWSPDRET 1815

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            L  AR      FSV + G  IP +  + +F  F        R+  G GLGL+I      L
Sbjct: 1816 LNQARSV--IAFSVSDTGIGIPPEKQQIIFEAFQQADGSTSRKYGGTGLGLAISREIARL 1873

Query: 768  HGGHVSISSSDEGVTTINCRIP 789
             GG + ++S+    +T    +P
Sbjct: 1874 LGGEIRLASAIGQGSTFTLYLP 1895


>gi|254446415|ref|ZP_05059891.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260723|gb|EDY85031.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 780

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 11/230 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E    A E K+ F+  +S+ELR+P+  IIG + +L   +   L+  +++ +E I 
Sbjct: 261 LVEARERAETALETKSDFLATMSHELRTPMNAIIGMSSVL---QFEDLDESRARQIEVIR 317

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL+L+NDILD + ++A  ++L  +   L   + E     A     N +   V  D
Sbjct: 318 KSSVNLLDLINDILDFSKIEANRLELENNAFDLVACIEEAMDITAAAKRNNRLVYCVNFD 377

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI-FSVKNNGS 728
             L S +  D  R+ QI   +L+NA  F+ KG+  +    L A R   + I  SV++ G 
Sbjct: 378 PTLPSHIKGDVTRVRQILVNLLNNAFKFTKKGTVTMDVFHLPADRRGSERIQISVRDTGI 437

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            IPE+  KS+F  F        R   G GLGL+I        GG + + S
Sbjct: 438 GIPEESLKSIFESFTQANGSTSREFGGTGLGLTISYRLALAMGGDIKVES 487


>gi|144897547|emb|CAM74411.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 530

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+ELR+PL  IIGF +L ++    +   +   ++  I  S+  LL +++DIL
Sbjct: 303 KSTFLANMSHELRTPLNAIIGFAELAESQMGEAEKQRLGSFICDIGESAHHLLRVISDIL 362

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+A V+AG + L+ S I + +++    +  A  +      +       L     D + + 
Sbjct: 363 DVARVEAGKINLHESLIFIPEVIQSAVRLTAPSVTAKQQTVLTSCPDDLPRLKGDERLIK 422

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   +++NA  F+     + ++A   +G    S+ +NG  I  D    V   F  V N 
Sbjct: 423 QVLLNLVANASKFTQNNGQITIRAELVDGCVRLSIADNGCGIAPDDIAKVLQPFGQVENL 482

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
              ++ G GLGL +   F+ LHGG + + S  ++G T I    P +
Sbjct: 483 LAPKQEGTGLGLPLAREFMELHGGSLDVQSQLNQGTTVILTFPPDR 528


>gi|108761495|ref|YP_631489.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
 gi|108465375|gb|ABF90560.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
          Length = 530

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           DS R  + L      L+  ++ +   + +VS++L++PLT I  +  ++   KLG L   Q
Sbjct: 141 DSARRNKDLQTAIAGLKSLEQNREELLGNVSHDLKNPLTTIKSYLAMMGREKLGPLTDAQ 200

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+    +S  +L +VND+L ++ + +G M+LN     L  +  EV +S+        
Sbjct: 201 RRAVQICDRNSDRMLRMVNDLLLMSRLQSGKMQLNQRPFGLKAVAEEVVRSLGALAEHCK 260

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +R+ +    ++  FV  DR+R+ +    ++ N +  S    TV ++ + ++G  + +VK+
Sbjct: 261 VRVVIPPCPEV--FVRGDRERIAEAIHNLVENGIHHSEADDTVEVRVSAEDGLAMLTVKD 318

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
           +G  +  +  + VF+ F   A  G  R  G GLGL +V   + LHGG + S S   EG T
Sbjct: 319 SGPGMSSEALEHVFDAFY-RATPGMPRPPGAGLGLPLVGKIVALHGGRMESASVLGEGST 377


>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
 gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
          Length = 1322

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 10/227 (4%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+E+R+PL  +IG  DLLK +   SL+ +Q +YV    +S+  LL L+NDILD
Sbjct: 611 SQFLAKMSHEIRTPLNGVIGMLDLLKAT---SLDDRQKRYVTICRSSADTLLGLINDILD 667

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLL 688
           L+ ++AG M+L      L+ L+ ++ +    +     + +   I+         D +RL 
Sbjct: 668 LSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGDPERLR 727

Query: 689 QIFSKILSNAMDFSSKGSTVIL--KAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QI   ++ NA+ F+S G  +I    A    G+      VK+ G  I     + +F  F  
Sbjct: 728 QILVNLVGNALKFTSVGYVLIKVSMAQSPTGEHRLQIHVKDTGIGISPAQQQKLFQPFTQ 787

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 RR  G GLGLSI     +L  G + I S+    TT    +P
Sbjct: 788 ADVTTSRRFGGTGLGLSICRQLADLMQGSIQIESAVGVGTTFTVDLP 834


>gi|254994023|ref|ZP_05276213.1| sensor histidine kinase [Listeria monocytogenes FSL J2-064]
          Length = 459

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L+K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L++   ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731
            D    +   D + L Q++S +L+NA+ F+ +G  + +            V+++G  I  
Sbjct: 340 -DLADVNNTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGK 398

Query: 732 EDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           EDM K +F+RF  +N  R +  G  GLGLSI +  I LH G +++ SS E  TT   ++P
Sbjct: 399 EDMAK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLP 457


>gi|138893858|ref|YP_001124311.1| sensory transduction histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250568|ref|ZP_03149258.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134265371|gb|ABO65566.1| Sensory transduction histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209917|gb|EDY04686.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 443

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 6/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  +   E ++ L++A+E++   +  V++ELR+PLT + G  D  +  +       + + 
Sbjct: 205 KVAQTFNEMSKQLQQAEEVRRRLMADVAHELRTPLTILRGKLDWFQQQR----RPIEPEK 260

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +      L  LV D+  L+  +AG + L      +  LL ++ + +A    E NIRI
Sbjct: 261 LLPLQDELIRLTRLVEDLHQLSLAEAGKLPLERKPTDMESLLQQLIERVAPSAEEKNIRI 320

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +       +   D  R+ Q+F  +L NA+ ++ +G TV +    +      +V + G  
Sbjct: 321 HLTCSTNYTTISVDPHRITQVFLNLLVNAIRYTPEGGTVNVVIDEEPSMLQIAVTDTGIG 380

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +    +F+RF     A    R G GLGL+I   F++ HGG + + S+    TT   +
Sbjct: 381 IAPEHLPFLFHRFYRTDEARTRNRGGTGLGLAIANEFVSAHGGTIDVHSTPGQGTTFLVK 440

Query: 788 IP 789
           +P
Sbjct: 441 LP 442


>gi|171909890|ref|ZP_02925360.1| two-component hybrid sensor and regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 836

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 124/254 (48%), Gaps = 17/254 (6%)

Query: 550 RAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R ++ +++   A R+A+     K  F+ ++S+E+R+P+  IIG T LL  S    L+++Q
Sbjct: 289 RKQKVISDSLAAKRQAESGMAAKADFLANMSHEIRTPMNGIIGTTSLLLDS---PLDNEQ 345

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  I  S   LL+L+NDILD + +++  M L    + L  L +E     A K  E  
Sbjct: 346 MELVRMIRTSGESLLHLINDILDFSKLESARMVLERLPVSLERLFHETMGIFAFKAAEKG 405

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFI 720
           + +   +S+        D QRL Q+   +++NA+ F+ +G  +     I++   D  ++ 
Sbjct: 406 VELNYHVSENIPRHITGDFQRLKQVLVNLVANAVKFTERGEILVVAQPIVRKLPDGSEYT 465

Query: 721 F---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               SV++ G  I +D    +F  F        R+  G GLGL+I      L GG +S++
Sbjct: 466 LLQVSVRDTGIGIAKDKLPLLFQAFTQADTSTTRKYGGTGLGLAICRKLCRLMGGEISVT 525

Query: 776 SSDEGVTTINCRIP 789
           S   G +     +P
Sbjct: 526 SELGGGSNFFFEVP 539


>gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 10/234 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L +  EA       K++F+ + S+E+R+P+  IIG  +LL  ++   L+ KQ ++
Sbjct: 356 RMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLLLGTR---LSDKQLEF 412

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +  S+  L+ ++NDILD + +DAG   L      L  +LN   + +     +  + +
Sbjct: 413 VRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQKGVEL 472

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVK 724
            ++    +  F+  D  RL Q+ + ++ NA+ F+ +G   +     +  D   +I FSVK
Sbjct: 473 ILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDFLSESDGVAYIRFSVK 532

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  +     + +F  F        RR  G GLGL+I    I L GG +S+ S
Sbjct: 533 DTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVES 586


>gi|229095613|ref|ZP_04226594.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
 gi|228687745|gb|EEL41642.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
          Length = 883

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D         I 
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWIII 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|254423157|ref|ZP_05036875.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196190646|gb|EDX85610.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1125

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLNLVND 626
           IK+ F+  VS+ELRSPL  I+G++ LLK    G+L+ K+++  +  I  ++ + + L+ D
Sbjct: 757 IKDEFLAVVSHELRSPLNPILGWSQLLKR---GTLDEKRTKLALASIERNAQLQVQLIGD 813

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ +    + L+ + + L  ++    +++     E +I I+        + V D  R
Sbjct: 814 LLDISRILRNKLILDKAPVDLESIIFAALETVKQATAEKSIHIETTITP--CTVVGDAVR 871

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   +LSNA+ F+ +  ++ +    D  + +  V + G  I  D    VF  F    
Sbjct: 872 LQQVVWNLLSNAVKFTPRDGSITVTVTADVSEVVIEVSDTGKGIAADFLPFVFEHFRQEN 931

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +   R+  G+GLGL+IV   ++LH G V++ S  E   TT +  +P
Sbjct: 932 YSTTRKFGGLGLGLAIVRQIVDLHDGTVAVRSPGENQGTTFSVCLP 977


>gi|254831077|ref|ZP_05235732.1| two-component sensor histidine kinase [Listeria monocytogenes
           10403S]
          Length = 591

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 10/236 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + ++D++ +  ++I     E NI++ +I +  + S
Sbjct: 416 LHRLIMDILALSRIEQNPVPENVELVEVDDVIEQSARTIFEMATEKNIQV-IIPEKTIPS 474

Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      
Sbjct: 475 VTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDR 534

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VF RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 535 VFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|318077901|ref|ZP_07985233.1| two-component sensor [Streptomyces sp. SA3_actF]
          Length = 366

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 142/308 (46%), Gaps = 30/308 (9%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R++  +D +   A I T   ++   L G  E+L  +  +Y + P P    +   V++ D+
Sbjct: 74  RWWRLTDPYGGLA-IRTRQPEKNLLLPGGREILVSA--QY-VRPRPRGPLVRLVVSLRDT 129

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
               R  TE++ A           +  V++ELRSPLT++ GFT  L  +K    N  Q +
Sbjct: 130 --GARRRTERSHA---------ELIATVAHELRSPLTSVKGFTATL-LAKWERFNDDQKR 177

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENN 666
             +E + A +  +  L+ ++LD++ +DAG M+L    + +       V+  IA     + 
Sbjct: 178 LMLETVDADAHRVTRLITELLDISRIDAGRMELRRQPVDIAGAAARHVQAHIAAGRPCDR 237

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIF 721
             + V     L +  AD  ++ Q+ S +L NA+     G TV +  A   G       + 
Sbjct: 238 FVVTVRR--PLPALWADPDKVDQVLSNLLENAVRHG--GGTVTIDIAPTAGGEGPEGTVI 293

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +V + G  IPE+    VF RF   + RG   G GLGL IV+  + +HGG +++  +  G 
Sbjct: 294 TVSDEGQGIPEESMNRVFTRFWRGSKRG---GTGLGLYIVKGIVEVHGGWITVGRAPRGG 350

Query: 782 TTINCRIP 789
                 +P
Sbjct: 351 ARFRFMLP 358


>gi|301309590|ref|ZP_07215532.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300832679|gb|EFK63307.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 638

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 19/248 (7%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +A++AL  + E+L +A       D +K+ F+ ++S+E+R+PL  IIGF+ L+  ++L   
Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ QY   I+ ++ +LL LVNDILDLA +++G +  +  +  L DL+  + +   + +
Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIF 721
            E  I  K           +D++RL Q    IL NA+ F+S G   I      N  D   
Sbjct: 513 PE-GIEFKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYSTNAQDVRL 571

Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I PED  +++F RF       Q  G GLGLSI ++ +    G + + S    
Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLQSEKNK 628

Query: 781 VTTINCRI 788
                CRI
Sbjct: 629 ----GCRI 632


>gi|307726955|ref|YP_003910168.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307587480|gb|ADN60877.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 882

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 5/232 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           ALR+ D  K+ F+  +++ELR+PL  +     LL+  K   +  K  + V  +S     +
Sbjct: 500 ALRETDRRKDEFLAMLAHELRNPLAPMRNAIALLRREKEAGM--KSCELVGMLSRQVDHM 557

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV+D+L+++ +  G + L    ++L   +    +++++     +  + V         
Sbjct: 558 AQLVDDLLEVSRITHGRIVLRREPVLLGTAVYGALETVSSMAASRSQHLTVTLPPAPVWL 617

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  RL QI   +L+NA  ++  G +V + A  D      ++++NGS I  D+   +F+
Sbjct: 618 HADPLRLSQILVNVLNNACKYTDPGGSVCVTALADERFATVTIEDNGSGISSDLLPHIFD 677

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            F        R   G+G+GLS+V+  + LHGG + I+S   G   T++ R+P
Sbjct: 678 LFAQGERTLDRAHGGLGIGLSLVKKLVELHGGGIDIASPGPGRGATVSIRLP 729


>gi|71909695|ref|YP_287282.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849316|gb|AAZ48812.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 631

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K SF+  +S+E+R+P+  I+G T+L   +    L  +Q +Y+ ++ +S   L+ ++
Sbjct: 255 AARAKTSFLATMSHEIRTPMNGILGMTELTLAT---DLTEEQREYLTWVKSSGDNLMRVL 311

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           NDILD + ++AG + L +  + L+ LL+ V    ++      +R+   +D +L    + D
Sbjct: 312 NDILDFSKINAGELNLEHIPLDLSSLLDSVVALYSSVAANKGLRLYWAADTELPEHLLGD 371

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI---FSVKNNGSSIPEDMCKS 737
             R+ Q+ + +LSNA+ F+  G   I    +   +N       F+V + G  IP     +
Sbjct: 372 PVRIQQVLNNLLSNALKFTEHGEVAIRVHCEKTLENSKVWRVHFTVADTGIGIPASKLGN 431

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +F+ F        R+  G GLGLSIVE  + L  G + + S+
Sbjct: 432 IFDPFAQAEEWTTRKYGGTGLGLSIVERLVRLMHGEIRVESA 473


>gi|218886242|ref|YP_002435563.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757196|gb|ACL08095.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1055

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 7/246 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA  +L    +A   A+  K+ F+ ++S+ELR+PL  ++G   LL       L+ ++  Y
Sbjct: 629 RAMVSLRRAKDAAEAANRSKDEFLANMSHELRTPLNGVLGMLQLLDGP---DLSDERRGY 685

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +     S   LL +++D+LD++ + AG   L         +L +V + +        + +
Sbjct: 686 LRTAVESGHALLRIIDDLLDISALGAGGSGLRDEPFDPAAVLRQVAEMVDPAARRRGLAL 745

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +I+D        D  RL Q+   +++N + F+ +G   IL         +F+V++ G  
Sbjct: 746 GLIADALPLRVRGDAARLRQVLYNLVANGVKFTHQGGVDILACPVGGDRLLFTVRDTGIG 805

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
           IPE+    V   F        RR  G GLGL IV   +   GG +++  S+EGV T+++ 
Sbjct: 806 IPEEKLPVVCEPFAQVDGSSTRRYQGAGLGLGIVRRQVARMGGTMTM-ESEEGVGTSVHV 864

Query: 787 RIPSKE 792
            +P  E
Sbjct: 865 CLPLPE 870


>gi|320449472|ref|YP_004201568.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
 gi|320149641|gb|ADW21019.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
          Length = 373

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 7/219 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL + ++ +   +  V++ELR+PL+ +  + + L    +     +  +  E I      
Sbjct: 138 EALERVEQSRVELIGTVAHELRTPLSALQAYAEALADGVM-----EPEKAAERIQQEVRA 192

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+  ++ V++G ++L+   +   +LL +  +          + ++V +   L  
Sbjct: 193 MSRLVRDLSLVSQVESGAVELHPGPLDPKELLEQAAERFRPAFQAKGVALEVAAPSFLPR 252

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +R LQ+ + +LSNA+  + +G  V L A R     +FSV++ G  IPE+    +F
Sbjct: 253 VWADAERTLQVLANLLSNALRHTPEGGRVRLGAERTGQAVVFSVEDTGPGIPEEHLPRIF 312

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  +  +   Q  G G+GL+I +S +   GG + + S
Sbjct: 313 ERFYRIDPSRSRQDGGTGVGLTIAKSLVEAMGGRIWVES 351


>gi|301308442|ref|ZP_07214396.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833912|gb|EFK64528.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 287

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 126/229 (55%), Gaps = 12/229 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +R ERA  EK E   +AD +K++F+ ++++E+R+PL  I+GF+ +L   +       + 
Sbjct: 50  GLRLERA-KEKAE---EADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEE---DRETRL 102

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++   I +++ +L  L+ D+LDL+ +++  M L Y  + +  L+ E+   I  +M  + I
Sbjct: 103 EFSNIIQSNNELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRM-PSGI 161

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            ++ ++D +     AD+ RL QI + +L+N++  + KG  +     R      F V+++G
Sbjct: 162 ELR-LNDCEALVMEADKNRLTQILTNLLTNSIKHTEKG-FIRFGYKRTAASVEFFVEDSG 219

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP D   S+F+RFV        +GVGLGL+I    +   GG + ++S
Sbjct: 220 EGIPRDKIDSIFSRFVQ--LDSWSKGVGLGLAICRGLVEQMGGKIWVTS 266


>gi|163639423|gb|ABY28262.1| ethylene receptor ERS1a [Actinidia deliciosa]
          Length = 466

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 137/272 (50%), Gaps = 42/272 (15%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  + LL  ++L
Sbjct: 152 ESMRARDQLMEQNVALDLARQEAEMAIRARNDFLAVMNHEMRTPMHAIISLSALLLETEL 211

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   +E I  SS +L  L+ND+LDL+ ++ G ++L      L++L  +V   I 
Sbjct: 212 ---TPEQRVMIETILKSSNLLATLINDVLDLSRLEDGSLELENGVFNLHELFRQVVDLIR 268

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + + +I    L  + V D +RL+Q    I  NA+ F+ KG   I+      ++
Sbjct: 269 PIASVKKLSMTLILGPDLPVYAVGDEKRLIQTILNIAGNAVKFTKKGFVSIVASIAKPES 328

Query: 713 ARD---------NGDFIF----SVKNNGSSI-PEDMCKSVFNRFV-----SNAHRGQRRG 753
            RD         +GD  F     VK+ G  I PED+  S F +F      S+ + G   G
Sbjct: 329 LRDWRPPEFYPVSGDSHFFLRVQVKDTGCGINPEDIPLS-FTKFAQSKSGSSLNNG---G 384

Query: 754 VGLGLSIVESFINLHGGHVSISS--SDEGVTT 783
            GLGL++   FINL GGH+ I S  SD+G T 
Sbjct: 385 AGLGLAVCNRFINLMGGHIWIESEGSDKGTTV 416


>gi|28210825|ref|NP_781769.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
 gi|28203263|gb|AAO35706.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
          Length = 571

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 9/241 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ +    ++K + I++ FV +V++EL++PLT+I GF + LK  +       + +++  I
Sbjct: 333 AVVQDVTEIKKLENIRSQFVANVTHELKTPLTSIRGFAETLKYVE---DRETKDKFLNII 389

Query: 614 SASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S  L  L+NDIL L+ ++ +  MKL    I +N++L ++   +     + NI + ++
Sbjct: 390 NDESDRLTRLINDILALSHIENSNSMKL--ENISINEMLEDIVYLMENSAKDKNIELFIV 447

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D K+     DR R  Q+   ++ N + ++ +G  V + A +++ + I  V++ G  I +
Sbjct: 448 GD-KMQPIKGDRDRFKQMMINLVDNGIKYTEEGGKVYIGAKKEDNNCIVWVEDTGVGISK 506

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF  V  A    + G GLGL+IV+  +   GG ++I S +   +    RIP 
Sbjct: 507 EHVERLFERFYRVDKARSRSQGGTGLGLAIVKHIVLGFGGTINIESEEGKGSKFIIRIPI 566

Query: 791 K 791
           K
Sbjct: 567 K 567


>gi|300864267|ref|ZP_07109147.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300337732|emb|CBN54293.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 677

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 14/251 (5%)

Query: 541 TFVNVTDSVRAE----RALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           T +++TD  +AE    R + E   ++EA R A+ +K+ F+  +S+ELR+PL  I+G++ L
Sbjct: 261 TIIDITDRKQAEEERGRLIGEQVARHEAER-ANRMKDEFLAILSHELRTPLNAILGWSKL 319

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+  K       ++  +E I  ++     L+ DILD++ +  G + LN   I L  ++  
Sbjct: 320 LRAKKFDQATIDKA--LETIERNAKSQAQLIEDILDVSRILRGKLNLNLHPIPLGYVIEV 377

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++       +I I+ +    +G  + D  RL Q+   +LSNA+ F+ +G  V ++  
Sbjct: 378 AIDALRPLAETKSIAIEFVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEGGKVEVRLE 437

Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              GD+    + + G  I  +    VF+RF        R   G+GLGL+IV   + LHGG
Sbjct: 438 L-VGDYAEIQIIDTGIGISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRHLVELHGG 496

Query: 771 HVSISSSDEGV 781
            V   ++  G+
Sbjct: 497 TVGAENNSSGI 507


>gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 1514

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 27/276 (9%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S DD+    QG LEL++  V                   +   V A  A  ++ EAL + 
Sbjct: 309 SLDDD---YQGFLELVAGQV-----------------ATIIADVGAYEAAKQRAEALAEI 348

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  K  F  +VS+E R+PLT ++   + L       L+  Q   +E    +S  LL LVN
Sbjct: 349 DRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLSPTQRDRLEIAQRNSLRLLKLVN 408

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
            +LD + ++AG  +  Y    +  L  E+  S  + M    + + +++   LG S   D+
Sbjct: 409 TLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTL-IVNCPPLGESVYVDQ 467

Query: 685 QRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           +   +I   +LSNA  ++  GS TV ++   D+ +   SV + G  IPE     +F RF 
Sbjct: 468 EMWEKIVLNLLSNAFKYTLTGSITVNVQGFDDHIE--LSVIDTGIGIPEADLPHLFERFH 525

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            V  A      G G+GLS+V+  + LHGG + ++SS
Sbjct: 526 RVKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSS 561


>gi|218902190|ref|YP_002450024.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
 gi|218536450|gb|ACK88848.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
          Length = 896

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N++  V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVKFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD--------FIF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKDWMTI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|166031682|ref|ZP_02234511.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC
           27755]
 gi|166028659|gb|EDR47416.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC
           27755]
          Length = 946

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 129/240 (53%), Gaps = 15/240 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A+  +  F++++S+++R+PL  IIGF  L   S+ G+    Q  Y+  IS S   LL 
Sbjct: 564 RQANRARGVFLRNMSHDIRTPLNAIIGFAKLAMKSE-GNFEQIQD-YLSKISVSGNHLLA 621

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           +VND+L+++ +++G  KL      + ++++EV+  I  +  E   +  ++   K+  +  
Sbjct: 622 IVNDVLEVSRIESGQTKLEELPCNIKNIVDEVEVIIQGQAQEKT-QTFIVDTSKVKDYYI 680

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSI-PED 733
             DR R+ ++   +L NA+ F+ KG  + L+      A     ++   VK+NG  + PE 
Sbjct: 681 YCDRLRVKEVLVNLLGNAVKFTPKGGKIELRIIQNEPAPEGYANYEVHVKDNGCGMSPEF 740

Query: 734 MCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           M K    F R  ++   G  +G GLGLSI + F++L GG + ++S ++  T +  RI  +
Sbjct: 741 MGKMFLPFERERTSTVSG-IQGTGLGLSIAKQFVDLMGGTIEVTSKEKEGTEVIVRISPR 799


>gi|308271627|emb|CBX28235.1| hypothetical protein N47_G35590 [uncultured Desulfobacterium sp.]
          Length = 487

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 138/296 (46%), Gaps = 13/296 (4%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L  A I+ F+ +R  +   + LL +   E +    P   T+ +   + +   A   + ++
Sbjct: 199 LMVAFISFFNTKR--INRPILLLKEKTTEVAKGRYPEPLTIHSPPEIGELATAFNNMCDR 256

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
              L++ D++K  F+ H+S++LR+PLT I   + +L          +Q +    I     
Sbjct: 257 ---LKELDDLKIDFISHISHKLRTPLTAIQEASGMLLEGIFAGKPERQQELYSIIKDECK 313

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH---ENNIRIKVISDG 675
            L+  VN ILDL+ ++A +M  ++    + D++  ++++I    H   +  I + +    
Sbjct: 314 RLIVEVNRILDLSRMEAKMMDYHFD---VTDIMPIIRKNILKLSHLAQKRGIELNMCPVN 370

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            L     D++R+LQ+  ++L NA+ F+  KG   I     + G    SV + G  IPE  
Sbjct: 371 SLPPINIDQERILQVVEELLGNALKFTPEKGKINISAILNEKGMIEISVTDTGYGIPEME 430

Query: 735 CKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF +F      R   RG GLGLSI +  I +HGG +   S     +T +  +P
Sbjct: 431 LGRVFEKFKRIEGGRAAERGTGLGLSIAKHIITVHGGQIWAESKPGKGSTFSFTLP 486


>gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 778

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 133/260 (51%), Gaps = 11/260 (4%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + F + T+    E  L +  +A + A++ K+ F+ ++S+E+R+PL  ++G   LL+T+  
Sbjct: 370 VEFRDDTERKLVEAELIKARDAAQAANQAKSEFLANMSHEIRTPLNGVMGLMQLLQTT-- 427

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+ +Q + V     SS  L  L+ D+LD++ ++AG M +      L +L + V +  A
Sbjct: 428 -LLDDEQREIVSMAIRSSDRLARLLTDLLDISKIEAGKMDVVEEDFSLRELCDSVTELFA 486

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARD 715
               + N+ ++ + D  L    +    RL QI   ++ N++ F+ +G   +     A   
Sbjct: 487 VNADKKNVSLEYVIDPDLPPILIGGVARLRQILFNLVGNSLKFTDQGRVRLEMAPIAPAK 546

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           NG+   +FSV + G  IPED  + +F  F  V  ++  + +G GLGL+IV   + L  GH
Sbjct: 547 NGELRLLFSVYDTGIGIPEDKLRDLFKPFAQVEGSYTRKYQGAGLGLAIVRRLVELMRGH 606

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S     T ++  +P K
Sbjct: 607 IYMESVLGKGTAVHVVLPFK 626


>gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 855

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|71280347|ref|YP_271164.1| sensory box sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71146087|gb|AAZ26560.1| sensory box sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 1137

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 135/250 (54%), Gaps = 18/250 (7%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+  F +VT     + AL +  +    A+ +K  F+ ++S+E+R+P+  + G  DLL  +
Sbjct: 549 TISIFHDVTSQQATQSALVKARDQAEYANRVKIQFLANMSHEVRTPINAMQGMMDLLAHT 608

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQ 656
              SL+++Q  Y+    ++S+ LL+LV+++LDL+ ++AG M ++   + L  ++N+ +K 
Sbjct: 609 ---SLDTRQLHYLVNAQSASSTLLHLVDELLDLSKIEAGKMIVSQDAVNLPIIINKALKL 665

Query: 657 SIATKMHENNIRIKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGS---TVIL 710
           +I    H+   R+K+I D       + ++D  RL+Q+ + + +NA+ F+ +G    T+ +
Sbjct: 666 NITNVDHQ---RVKIIVDMSADVPSNVISDEMRLVQVLANLFNNAIKFTEQGQIKLTIDV 722

Query: 711 KAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFIN 766
            +  D      F + + G  I  +    +FN F S A     R   G GLGLSI +  I 
Sbjct: 723 LSIDDTVAKLRFRMSDTGIGIASNNQSHLFNAF-SQADESMTRKYGGSGLGLSICQQIIK 781

Query: 767 LHGGHVSISS 776
           L GG + ++S
Sbjct: 782 LLGGKIKLTS 791


>gi|163639427|gb|ABY28264.1| ethylene receptor ETR1 [Actinidia deliciosa]
          Length = 744

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 134/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+    EV   + 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDVRTFNLHATFREVLNLVK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + I +     L  + V D +RL+QI   ++ NA+ FS +GS  I         
Sbjct: 432 PIASVKQLFISINLAPDLPEYAVGDEKRLMQIMLNVVGNAVKFSKEGSISITAFVAKPES 491

Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+  R         DN  ++   VK+ GS I P+D+ K VF +F  +     R   G GL
Sbjct: 492 LRDPRAPEFFPVPCDNHFYMRVQVKDFGSGINPQDIPK-VFTKFAQSQSLVSRNSGGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  G++ I S   G
Sbjct: 551 GLAICKRFVNLMEGNIWIESEGLG 574


>gi|146342589|ref|YP_001207637.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146195395|emb|CAL79420.1| putative sensor histidine kinase with multiple PAS/PAC and a
           response regulator receiver domain [Bradyrhizobium sp.
           ORS278]
          Length = 1231

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISAS 616
           + E L + D  K +F  +VS+E R+PLT ++G   D+L   ++  L++     +E    +
Sbjct: 347 RAETLAEIDRAKTAFFANVSHEFRTPLTLMLGPLEDVLSQPQV--LSAADHDRLEIAQRN 404

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL LVN +LD++ ++AG M+  Y    L     EV     + +    +++ V     
Sbjct: 405 ALRLLKLVNTLLDVSRIEAGRMQAAYVPTDLPSFTAEVASVFRSAIETAGLKLIVDCPPL 464

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 DR+   +I   +LSNA  F+  G  + +K    +  F  ++++ G+ IP+    
Sbjct: 465 QEPAHVDREMWEKIVLNLLSNAFKFTFSGE-IEVKLREVDSHFELTIRDTGTGIPQHELP 523

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF  V+ A      G G+GL++V+    LHGG V ++S+    +T   R+P
Sbjct: 524 KLFERFHRVAGASGRTHEGSGIGLALVQELAKLHGGSVGVTSTLGQGSTFAVRVP 578


>gi|110638386|ref|YP_678595.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110281067|gb|ABG59253.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 577

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 114/217 (52%), Gaps = 7/217 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D  K +F+  VS+E ++P+++I     LL+  ++G LN +Q   +E I   +  LL 
Sbjct: 347 KELDFAKTNFIATVSHEFKTPISSIKMSLQLLENKQIGMLNEEQQNLLESIKEDANRLLK 406

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLND---LLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  ++L++  V++G ++L   +I+ ND   +L     +  T+  + NI +K+ +   +  
Sbjct: 407 ITGELLNMTQVESGNIQL---SILPNDPKEILFYAINATKTQAEQKNISLKITAPDNIPH 463

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD ++   +   +LSNA+ +S   ST+ L  A  +     SVK+ G  I       +F
Sbjct: 464 VLADNEKTAWVLINLLSNAIRYSYDNSTIQLAIASRDNKVTISVKDTGQGIASQYKDKIF 523

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           NR+       ++ G GLGL+I + FI   GG +S+ S
Sbjct: 524 NRYFR-VPGTKKEGTGLGLAISKEFIEAQGGSISVDS 559


>gi|298530364|ref|ZP_07017766.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509738|gb|EFI33642.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 919

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 134/270 (49%), Gaps = 16/270 (5%)

Query: 535 NAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N + ++  V ++T+  +  + L  +  A  +A+  K+ F+ ++S+E+R+P+  ++GF  +
Sbjct: 567 NQEHIMALVQDITERKQVHQELIARRSA-EEANRAKSRFLANMSHEIRTPMNAVLGFARM 625

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+     +L +KQ+     I  S   LL L+N ILD++ ++AG   L+     L  L+++
Sbjct: 626 LENDP--ALPAKQAAQAGTIVRSGDHLLQLLNSILDMSRIEAGQSGLHPEDFHLPGLIDK 683

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +         +  + + +  D  L   + AD+ +LLQI + +LSNA+ F+S G   +  +
Sbjct: 684 LMTMFELSAQDKGLELVLEKDPHLPPDLHADQGKLLQILTNLLSNAIKFTSTGEVKLTIS 743

Query: 713 ARDNGD-----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           ++  G             +F V+++G  I       +F  F    ++    G GLGL+I 
Sbjct: 744 SKPPGPADTACEEQDLGLVFQVQDSGPGITAQDQAQLFEPFFQTQNKMHPGGTGLGLTIS 803

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +  L GG++++SS +   +     IP K
Sbjct: 804 REYAVLMGGNLTVSSQEGRGSCFRLEIPVK 833


>gi|290892746|ref|ZP_06555738.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557806|gb|EFD91328.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 459

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620
           L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  +S  +T L
Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTVLSEETTRL 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +L   +L LA++D          + L     ++ Q       E  + I +  D    ++
Sbjct: 289 SSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL--DLADVNY 346

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D + L Q++S +L+NA+ F+ +G  + +    +  +    V+++G  I +     +F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQIHLYDEGTNVFVEVQDSGVGISKSDMAKIFE 406

Query: 741 RFV-SNAHRGQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  +N  R +  G  GLGLSI +  I LH G +++ SS E  TT   ++P
Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLP 457


>gi|229818839|ref|YP_002880365.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia
           cavernae DSM 12333]
 gi|229564752|gb|ACQ78603.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia
           cavernae DSM 12333]
          Length = 579

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 18/244 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +T ++EA R  DE    F+  VS+ELR+PL++I+G+ +LL+    G+L+ +   YV+ I 
Sbjct: 331 VTARHEAERLQDE----FIGLVSHELRTPLSSILGYVELLQLG--GALSGEDETYVDVID 384

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL +V+D+L    + AG        + +  ++ E+   I        +++ V  D
Sbjct: 385 RNARRLLRMVDDLLTSVQLTAGTFTFLPEQVDVVGVVRELVTDIEPTARRAEVQVVVAGD 444

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDNGDFIFSVKNNG 727
             +    +D  RL Q+   +L NA+ FS++G+TV +K         R     +  V + G
Sbjct: 445 DAV-PLRSDPGRLGQVVGNVLGNAVKFSARGATVTVKVTGLLGADGRRRARIV--VTDTG 501

Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           S I  D    +  RF   S+A R + RGVG+GLS+V++ ++ HGG ++I S     T + 
Sbjct: 502 SGIAPDDLARITERFYRSSDARRRRVRGVGIGLSVVQAIVDAHGGTITIRSQPGEGTVVE 561

Query: 786 CRIP 789
             +P
Sbjct: 562 IDLP 565


>gi|183221820|ref|YP_001839816.1| putative two-component regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911892|ref|YP_001963447.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776568|gb|ABZ94869.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780242|gb|ABZ98540.1| Putative two-component regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 723

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 10/258 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+VT S+  ER L    +   +A++ K+ F+ ++S+ELR+PL  +IG +  L      
Sbjct: 328 VLVDVTQSIVYERELLLAKKKAEEANKAKSDFLSNMSHELRTPLNAVIGISLWLLEE--- 384

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +  ++Q + ++ +  SS  LL+L+NDILD   ++  ++++      L D L  +  S   
Sbjct: 385 NPKTEQLENLKNLKFSSESLLSLINDILDFNKIEERLVEIERIDFNLKDFLKSITTSFTM 444

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RD 715
           +  E  +         +  F+ +D  RLLQI + +LSNA+ F+  GS  +  +A     +
Sbjct: 445 RAKEKLLIFNEDIKDTVPEFIHSDPTRLLQILNNLLSNALKFTQVGSITLYVSAIPMDSE 504

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           +    F V + G  I  +  +SVF +F        R+  G GLGL+I ++ + L GGH+ 
Sbjct: 505 SVLLTFEVTDTGIGIEPNKFQSVFEKFTQANQDTTRKFGGSGLGLAISKALVELLGGHLV 564

Query: 774 ISSSDEGVTTINCRIPSK 791
           ++S     +  +  +P K
Sbjct: 565 LTSEVGKGSKFSFSLPCK 582


>gi|150018233|ref|YP_001310487.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149904698|gb|ABR35531.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 403

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 2/235 (0%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L +  E+K+ F+  +S+E R+PL  I      +       L+ K  +Y+  I  ++ 
Sbjct: 137 NLELERTLEMKDEFLSLISHEFRTPLNVISSAIQAMNYICSDELSDKAKKYLRMIRQNTF 196

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L LVN++LD+  V+AG +K+N   + +  L   + +SI T +   +I +  +S  +  
Sbjct: 197 RQLRLVNNLLDITRVNAGRIKINKKNVDIVFLTKSIIESIYTYVALKSIDVTFVSLIEKK 256

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D ++  +I   +LSNA  F+ +G  +I+  +  +      VK+ G  IPED    +
Sbjct: 257 IIGIDDEKYERILLNLLSNATKFTPEGKPIIVTLSSIDDKICVEVKDKGIGIPEDKANII 316

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF  V ++   Q  G G+GLS+V+ FI   GG +S+ S     +T    +PS+
Sbjct: 317 FERFGQVDSSLSRQAEGAGIGLSLVKKFIEALGGSISVKSELGKGSTFTILLPSE 371


>gi|312879107|ref|ZP_07738907.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782398|gb|EFQ22796.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 540

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 167/365 (45%), Gaps = 28/365 (7%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSL-WKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +H    + +    GRI+  NP F+ L   T E+ L     +         +Y E   W  
Sbjct: 21  EHNPSAIVITDAAGRIEYVNPRFQELTGYTAEDVLGKTPRVLQSGLHDRGFYEEL--WGT 78

Query: 500 FA---AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERAL 555
            A        F + RK    T EL  +S    +I P+ + + ++  +V V + V   + L
Sbjct: 79  LARGEVWKGEFCNRRK----TGELYWESA---AIAPVRDRKGVVANYVAVKEDVTESKVL 131

Query: 556 TEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E+     E    A+E K+ F+  +S+E+R+P+  I+G  +LL+ +    L+ +Q +Y+ 
Sbjct: 132 REELLRAKEDAETANEAKSVFLASMSHEIRTPMNGILGMLELLRQT---DLDPQQEEYLR 188

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S+  L++ +N +L+ + + A   +L      L   +  + +  A +  E  +   +
Sbjct: 189 IVRESAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELFALRAREKGLETVL 248

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI--FSVKNN 726
             D ++   V  D  RL QI + +L NA+ F+ KG  +  I +   ++G     F V + 
Sbjct: 249 DLDPQVPPRVRGDPLRLRQILTNLLDNALKFTEKGWIALSIRRFPPEDGGLWLEFGVVDT 308

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +    +F  F        RR  G GLGL+IV   ++L GG +S+ S +   ++ 
Sbjct: 309 GIGIPREKRHRIFQGFGQLDRSTTRRYGGSGLGLAIVRQMVSLWGGFLSLESEEGKGSSF 368

Query: 785 NCRIP 789
           + R+P
Sbjct: 369 HVRLP 373


>gi|300718124|ref|YP_003742927.1| Signal transduction histidine-protein kinase [Erwinia billingiae
           Eb661]
 gi|299063960|emb|CAX61080.1| Signal transduction histidine-protein kinase [Erwinia billingiae
           Eb661]
          Length = 908

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 20/226 (8%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     LN  Q  Y+  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LNITQRDYLHTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGK 676
           +++ND+LD + ++AG + L      L D L+EV   +A   HE  + + +     + D  
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRDTLDEVVVLLAQSAHEKGLELTLSIQPEVPDNT 402

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPE 732
           +G    D  RL QI   +L NA+ F+ +G+  I   L++   N  +    + + G  I E
Sbjct: 403 IG----DPLRLQQIIINLLGNAIKFTERGNIDIRIELRSLSTNRVNLEVQIHDTGIGISE 458

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                +F  F        RR  G GLGL I +  +N  GG +S+ S
Sbjct: 459 KQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISLHS 504


>gi|238920900|ref|YP_002934415.1| hybrid sensory histidine kinase BarA [Edwardsiella ictaluri 93-146]
 gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA [Edwardsiella
           ictaluri 93-146]
          Length = 918

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT  ++KT     L++ Q  Y+  I  S+  LL
Sbjct: 282 QEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKTP----LSATQIDYLHTIERSANNLL 337

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L +   +L + ++EV   +A   H+  + + + + +      
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVHNDVPEHV 397

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           + D  RL Q+ + +L NA+ F+ KG+  I    R       +    V + G  I E    
Sbjct: 398 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTSQAVELEIQVHDTGIGISERQQS 457

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  IN  GG ++  S
Sbjct: 458 QLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHS 499


>gi|237734956|ref|ZP_04565437.1| two-component system sensor protein kdpD [Mollicutes bacterium D7]
 gi|229381732|gb|EEO31823.1| two-component system sensor protein kdpD [Coprobacillus sp. D7]
          Length = 486

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 127/241 (52%), Gaps = 8/241 (3%)

Query: 557 EKNEALRKAD--EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613
           EK EA  + +  ++K++ ++ +S++LR+PLT+I G  + L  + L ++ S  S   ++ I
Sbjct: 245 EKEEARLQVEREKLKSTLLRSISHDLRTPLTSIAGGANFL-VNNLDTVESDTSLNIIQDI 303

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S  +  L  +V ++L++  +  G  K+N    V++D+++    +I  +   + + +K   
Sbjct: 304 SKEAMRLNGMVENLLNMTRIQEGNFKINKKLEVVDDIISTAVSAITNRKENHELVVKETK 363

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  L  F  D Q ++Q+   +L NA   +   S V+LKA   N + IF V +NG  I   
Sbjct: 364 DIIL--FPCDAQLIVQVLVNLLDNAFKHTPDASKVMLKAFVRNNNIIFQVIDNGKGIEIK 421

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F+ F + +  +   +RG+GLGL+I ++ +  H G +   ++D G  T    +P +
Sbjct: 422 QLNHIFDDFFTTSLDNGDHKRGIGLGLAICKAIVEAHKGEIKAFNNDLGGATFELSLPLE 481

Query: 792 E 792
           E
Sbjct: 482 E 482


>gi|110598538|ref|ZP_01386807.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339842|gb|EAT58348.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 596

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           LR  + ++  FV  VS+ELR+PLT+I G+T+ L     G+++  +  S +++ I   S  
Sbjct: 357 LRNLERVRRDFVSSVSHELRTPLTSIKGYTETLLE---GAMHEPEHASAFLKIILQESEQ 413

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVND+LDL+ +++G ++ ++S + L  ++ +    +   + +  +R+ V     +  
Sbjct: 414 LTALVNDVLDLSRIESGRIEYHFSAVDLRTVIAKSVDQLRLALEKKAVRLDVSIADDMPQ 473

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
             AD   L  +   +L NA+ +       I  +A  NGDF+   V++NG  I +     +
Sbjct: 474 LHADSGYLEIVVRNLLDNAIKYVDAEHGKIRISAFRNGDFVQLDVEDNGIGISKQDLGRI 533

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F RF  V  A   +  G GLGL+IV+  +  H GHV + S
Sbjct: 534 FERFYRVDKARSRELGGTGLGLAIVKHIVLAHKGHVEVRS 573


>gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 599

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 8/245 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQ 608
           +A +AL E  EA   A + K++F+  +S+ELR+PLT I+G+++ L+   L   L+S  S 
Sbjct: 342 QAAQALQEAKEAAEAASQAKSAFLSMMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSD 401

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENN 666
               I+A    LL L+NDILD A ++A  + ++   + ++ L+NEV  ++    K  +N 
Sbjct: 402 LDRIITAGRH-LLTLINDILDYARLEANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNT 460

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I + V  D  L   +AD  RL Q+   ++ NA  F+ +G   +        +    V + 
Sbjct: 461 ITVTVEPD--LPPVLADPVRLRQVLLNLVGNACKFTGQGEIRVHCYRSTTAEIQIDVSDT 518

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D  + +F  FV   +   RR  G GLGL+I +    + GG + ++S     +T 
Sbjct: 519 GIGIAADQLQHLFKPFVQVDNGPTRRYGGTGLGLAICQRLCQVMGGAILVTSEPGRGSTF 578

Query: 785 NCRIP 789
           + R+P
Sbjct: 579 SVRLP 583


>gi|210613372|ref|ZP_03289692.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787]
 gi|210151214|gb|EEA82222.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787]
          Length = 470

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+  D+ +  F+ +VS++ RSPLT+I G+ + +    +      Q +Y + I   +  L 
Sbjct: 239 LKDMDDYQKKFIANVSHDFRSPLTSIKGYLEAMADGTIPV--EMQDKYFKIILFETERLT 296

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L  D+L L   D   M L+ ++  +++++     +         I IK++   K+ +  
Sbjct: 297 DLTQDLLTLNQFDTKNMLLDKTSFDIHEVIKNTAATFEGTCTGKRISIKLLFATKVLNVS 356

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD++++ Q+   +L NA+ FS   S +I++    N     SVK++G  IP+     ++ R
Sbjct: 357 ADKRKIQQVLYNLLDNAIKFSPNDSEIIIETTEHNEKVFVSVKDHGIGIPKKSLNKIWER 416

Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT-----INCRIP 789
           F  ++  RG+ ++G GLGLSIV+  I  H  ++++ S+ EGV T     +  R+P
Sbjct: 417 FYKTDLSRGKDKKGTGLGLSIVKEIIQAHKQNINVVST-EGVGTEFTFSLQKRMP 470


>gi|206972722|ref|ZP_03233659.1| putative sensor histidine kinase [Bacillus cereus AH1134]
 gi|206732355|gb|EDZ49540.1| putative sensor histidine kinase [Bacillus cereus AH1134]
          Length = 337

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 103 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKVLYMKSNNLKH 161

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++++        +A
Sbjct: 162 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPESTCPIIA 221

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   +++I   ++ NA+ +   G T+ ++    + ++   + + G  IP+   +++F R 
Sbjct: 222 DHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIPQHDLQNIFERM 281

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    TT    +P
Sbjct: 282 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSVP 330


>gi|30019943|ref|NP_831574.1| sensor protein vanS [Bacillus cereus ATCC 14579]
 gi|29895488|gb|AAP08775.1| Sensor protein vanS [Bacillus cereus ATCC 14579]
          Length = 358

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 130/245 (53%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 112 RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 170

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+   + +  L+ ++      ++ + N+  
Sbjct: 171 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 230

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + SD  L   V D   ++++F  ++ N++ +   G  + ++ +    +    +KN G  
Sbjct: 231 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 289

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S   LH G +++ S+D+  T  
Sbjct: 290 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGMGLAISKSIAQLHQGDITVRSNDKE-TVF 345

Query: 785 NCRIP 789
             ++P
Sbjct: 346 TVKLP 350


>gi|323497639|ref|ZP_08102656.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM
           21326]
 gi|323317388|gb|EGA70382.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM
           21326]
          Length = 566

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 126/241 (52%), Gaps = 10/241 (4%)

Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +T   +A  +A+E + S   FV  +++ELR+PL  ++G  +LL  +   SL+ +QS  + 
Sbjct: 188 VTSNQKARARAEESERSTKEFVAMINHELRTPLNGLLGSAELLADT---SLDGEQSVLLN 244

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S  +L +++NDILD + + AG+M+L  +     D+ + +      + +E  I   +
Sbjct: 245 NLIHSGGLLRHIINDILDFSKMSAGMMELIPTRFDWRDIRDMLTGVFEPRANEKGIGFNL 304

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           I    +  +F+ DR+R+ Q+   ++ NA+ F+ +GS V ++     G   F V++ G  I
Sbjct: 305 IELNPMPEAFIGDRERISQVLVNLVGNAIKFTHQGS-VSIETDWQEGQVSFRVRDTGIGI 363

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++    +F+ FV      +R   G GLGL+I +  + +  G +++ SS    +    +I
Sbjct: 364 DQESMAQLFDPFVQADRTAKRNYEGTGLGLAICKRLVEMMKGELTVVSSKGVGSEFRVKI 423

Query: 789 P 789
           P
Sbjct: 424 P 424


>gi|229115400|ref|ZP_04244807.1| hypothetical protein bcere0017_16940 [Bacillus cereus Rock1-3]
 gi|228668014|gb|EEL23449.1| hypothetical protein bcere0017_16940 [Bacillus cereus Rock1-3]
          Length = 246

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 130/243 (53%), Gaps = 13/243 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QYV  
Sbjct: 3   KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSHGEECGQYVSI 61

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   S  L N V D+L+   ++   ++L+ + + +  L+ +V      ++ + N+   + 
Sbjct: 62  LKRKSYELKNQVEDLLEYCQINYREIELHKNVVDMKALIEQVMIDFLPQLDDANMSFYIK 121

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S+ +L   V D   ++++F  I+SN++ +   G  + ++ ++   +    +KN G  IP 
Sbjct: 122 SNEELYVKV-DVALIVRLFENIISNSIMYGKDGKEISIQISQRERNVEVEIKNFGQCIPT 180

Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                VF +F    +RG++       G G+GL+I  S   LH G +++ S+D+  T    
Sbjct: 181 KSLPYVFEKF----YRGEKSRSSHTGGKGMGLAISRSIAQLHKGDITVCSNDKE-TIFTV 235

Query: 787 RIP 789
           ++P
Sbjct: 236 KLP 238


>gi|167903068|ref|ZP_02490273.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei NCTC 13177]
          Length = 345

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  +  + + D  RL QI   ++ N + ++ +G   +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|149181690|ref|ZP_01860183.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148850668|gb|EDL64825.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 590

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 159/360 (44%), Gaps = 47/360 (13%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV  F  DG I ++NP    F   W  E+     G     I  T           +L
Sbjct: 264 MADGVITFNRDGTILITNPPAERFLQQWYYEQE----GNEQEAIPTTLK---------EL 310

Query: 500 FAAIITSFDDE--RKSLQGTLELLSDSVLEYSII--PLPNAQTMLTFVNVTDSVRAERAL 555
              +I   +++    SLQG           Y +I  PL N +       V  +V   R +
Sbjct: 311 LEQVILLENEQTGEVSLQGR---------SYVVIVSPLYNEEY------VRGAVAVVRDM 355

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           TE+    R+ D+++  F+ +VS+ELR+P+  + G+++ +    +     ++ +  + I  
Sbjct: 356 TEE----RRLDKLRKDFIANVSHELRTPIAMLQGYSEAI-IDDIAESEEEKKEIAKIIYD 410

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  LVND+LDLA ++AG + L      ++  L  V         E NI +  I   
Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHITLKKEKSDISTFLERVTNKFQGIAKEKNIGLNFIGH- 469

Query: 676 KLG----SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           K G        D  R+ Q+ + ++ NA+  + +  +V +         +  V ++GS IP
Sbjct: 470 KTGLNSQQIYIDPDRIEQVLTNLIDNALRHTPETGSVSVNYKPTKSGILVEVSDSGSGIP 529

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+    VF RF     A    + G GLGL+I ++ I+ H G +S+ S  +  TT +  +P
Sbjct: 530 EEDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIIDSHNGQISVHSKVDQGTTFSFFLP 589


>gi|262199366|ref|YP_003270575.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
            14365]
 gi|262082713|gb|ACY18682.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
            14365]
          Length = 1885

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 12/226 (5%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K EA R A+  K+ F+  +++ELR+P+  IIG  +LL  ++    + +Q +Y+     ++
Sbjct: 1484 KEEAER-ANRAKSDFLASINHELRTPMNGIIGMIELLFDTE---PSDEQREYLGMARTAA 1539

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
              L+ ++ D LD++ ++AG ++L      L+D +  +   +  +       +   ++   
Sbjct: 1540 DQLMRIIRDTLDVSRIEAGKLELEPIEFELDDCMATLASMLPAQTQSEGPALSFDVAPEV 1599

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI--FSVKNNGSSI- 730
                  DR RLLQ+   +  NA+ F+     V L    A+R  G  +  F+V+++G  I 
Sbjct: 1600 PRKLRGDRDRLLQVLINLFGNAIRFTPAEGLVALHVDLASRSAGAVVLRFAVRDSGEGIA 1659

Query: 731  PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            PED  +++F  F        + GVGLGL+IV S + L GG +S+ S
Sbjct: 1660 PEDQ-EAIFQPFTQARSANSKGGVGLGLAIVSSLVELMGGDISVES 1704


>gi|253578619|ref|ZP_04855891.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850937|gb|EES78895.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 686

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 12/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E  + A+E K  F+ ++S+++R+P+  IIGF+ LL+ +       K  +Y+  I 
Sbjct: 296 LEKAAELAKSANEAKTRFLFNMSHDIRTPMNAIIGFSGLLEKNLQNE--EKAKEYLGKIC 353

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S  +L+ ++N IL++A +++G   L      +N L + V       + + N++  V  D
Sbjct: 354 SSGNLLMTIINQILEIARIESGTTALQLKAEDINTLFHTVNTVFEEDVRKKNLQYSVDLD 413

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGD-----FIFSVKNNGS 728
                 + DR +L +I   I+SNA+ ++S G  V +K   +D+ D      IF+ ++ G 
Sbjct: 414 VYHTFILCDRVKLQEIMLNIISNAIKYTSDGHGVHVKIYEKDSEDPRKARLIFTCEDTGI 473

Query: 729 SIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            + E+    +F  F S  H     +  G GLGL IV+S I L GG + + S+    T   
Sbjct: 474 GMSEEYLPHIFEEF-SREHTTTENKVAGTGLGLPIVKSMIELMGGSIRVESTQGAGTKFT 532

Query: 786 CRI 788
             I
Sbjct: 533 VDI 535


>gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 589

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+    RK D++++ F+ +VS+ELR+P+  + G+++ +    + +   ++ ++ + 
Sbjct: 353 RDMTEE----RKLDKLRDDFIANVSHELRTPVAMLQGYSEAI-IDDIAASEEEKKEFAKI 407

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I   +  +  LVN++LDLA ++AG        +  N  +  V         E  I +   
Sbjct: 408 IYDETLRIGRLVNELLDLARMEAGHFSFRMEPVSFNSFIERVTHKFNGIAKEKGIDLVCE 467

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            SD  L +   D  R+ Q+ + ++ NA+  +S    V +K     G     V++NGS IP
Sbjct: 468 TSDSDL-TLEIDADRIEQVLTNLIDNALRHTSSNGYVKVKEEEAPGGVYVHVEDNGSGIP 526

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    VF RF     A    + G GLGL+I ++ +  HGG + + S     TT +  +P
Sbjct: 527 DEDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEGHGGRIFVKSKLGEGTTFSFFLP 586

Query: 790 SK 791
            K
Sbjct: 587 KK 588


>gi|212639804|ref|YP_002316324.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561284|gb|ACJ34339.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 469

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 19/246 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A  +   AL K DE K  F+ +VS+ELR+PL+ + G+++ L    +    ++Q +YV  
Sbjct: 229 KAFNQMAHALAKEDERKKEFLANVSHELRTPLSYVKGYSEALLDGVIKE-EAQQKKYVRL 287

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---- 668
           I   ++ +  LV D+LDLA ++ G   L  +   +  L+ E  +     + E NIR    
Sbjct: 288 IHREASRMQRLVRDLLDLAQLE-GTYPLVRTPFSIAQLVEETIEKYEPMLQEKNIRLLLD 346

Query: 669 --IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
               +I DG       D  R+ Q+   +L NA+ ++    T+ L+A          + ++
Sbjct: 347 LDHDLIVDG-------DPDRIEQVLQNVLDNALRYTPSFGTISLRAVNKQPMCELIIADS 399

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  + ++  + +  RF   A R + R   G GLG++IV+  I LHGG +   S     TT
Sbjct: 400 GCGMSKEDIERLGERFF-RADRSRSREHGGTGLGIAIVKQIIKLHGGSIRFESEQGKGTT 458

Query: 784 INCRIP 789
           +   +P
Sbjct: 459 VYMELP 464


>gi|52144326|ref|YP_082503.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977795|gb|AAU19345.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 896

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD--------FIF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKDWMTI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|321225247|gb|EFX50306.1| Aerobic respiration control sensor protein arcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
          Length = 608

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|297159981|gb|ADI09693.1| Histidine kinase [Streptomyces bingchenggensis BCW-1]
          Length = 557

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 7/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+     E+L+ ++E +   V  V++ELR+PL N+ G+ + L+   +      + + +  
Sbjct: 314 RSFNRMAESLQASEERQRRLVGDVAHELRTPLANLRGYLEALRDGVV----DPEPELLAS 369

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +     +   +V+D+ DLA  +AG +  +   I L +LL   +     +     + + V 
Sbjct: 370 LHEEVLLQQRIVDDLQDLALAEAGALTYHREDIDLGELLETCRTVHRAQAERAGVALTVE 429

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + G    +  AD  RL Q    ++SNA+  +  G TV L  AR     +  V + G  IP
Sbjct: 430 TPGGEPLYAHADADRLRQAVGNLVSNAVRATGPGGTVRLSLARRGAGAVVQVGDTGHGIP 489

Query: 732 EDMCKSVFNRF-VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    VF+RF  ++A RG+   G GLGLSI    +  H G + + S+    TT    +P
Sbjct: 490 AEHLPHVFDRFWRADAARGRATGGSGLGLSIARQIVTDHQGTIGVESAVGAGTTFTIELP 549

Query: 790 S 790
           +
Sbjct: 550 T 550


>gi|119946606|ref|YP_944286.1| fused histidine kinase sensor/response regulator [Psychromonas
           ingrahamii 37]
 gi|119865210|gb|ABM04687.1| fused histidine kinase sensor and response regulator containing
           ATPase domain [Psychromonas ingrahamii 37]
          Length = 1121

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 6/238 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    E    A+E K+ ++  +S+ELR+PL  ++G+  LL  S+  +L  KQ + +  +
Sbjct: 656 ALQVAKEVAEAANEAKSRYLAGLSHELRTPLNVLLGYAQLL--SRDPALPFKQREIIGIV 713

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   L +L+  +L+++ ++AG + L      L  +L ++      +  +  ++   ++
Sbjct: 714 KRNGEHLADLIEGLLEISKIEAGRVNLQRDEFNLKAILQQLVDMFQMQASKKRLKFYYLA 773

Query: 674 DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              L  +VA D+QRL QI   ++SNA+ ++ +GS V  K    +    FSV + G  I +
Sbjct: 774 SPNLPDYVATDKQRLRQILINLISNAIKYTEQGS-VTFKVTYRSEVAHFSVIDTGPGISK 832

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              + +F  F  + N H     G GLGL+I  S   L GG +S++SS    +T N R+
Sbjct: 833 SNQELIFKPFEQIRNDHTKAISGTGLGLTISRSLAELMGGEISLTSSIGQGSTFNFRL 890


>gi|332526424|ref|ZP_08402545.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332110555|gb|EGJ10878.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 679

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 162/364 (44%), Gaps = 28/364 (7%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESD 495
           ETID   E   ++ PD R+ + N  +R+L+      L  G    +I  A      Y  + 
Sbjct: 296 ETID---EAFVLYDPDDRLVICNDKYRALFARPGMELLTGVRYEDILRAGVRGGQYPAAQ 352

Query: 496 G----WDLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQTMLTFVNVTDSVR 550
           G    W     +       R      ++ L D  VL      +P+   +   V++TD VR
Sbjct: 353 GREEEW-----VAQRLQVHRSGAGPFVQRLDDGRVLRVVDRVMPDGHVVGFRVDITDLVR 407

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A        EA  +AD  K+ F+  +S+ELR+PL +I+GF+DL +    G  + +     
Sbjct: 408 A-------TEAAEQADRSKSEFIGTISHELRTPLQSILGFSDLGRHFAAG--HPQFEPMF 458

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I    T +L LVN +LD++ +D  +  L      L +L   V + +  +     + I 
Sbjct: 459 RDIHDGGTRMLRLVNGLLDISKIDGTLGSLVRRPADLGELALAVVRELRPQAGARRVEIV 518

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGS 728
           +       +   D  R+ Q+   +L+NA+ F+ +GS++ + AA D G       + + G 
Sbjct: 519 LPEAAAALTAEVDAFRMQQVLRNVLANAIRFAPEGSSIEI-AATDLGAAGRRLEILDRGP 577

Query: 729 SIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPE   +++F  FV ++  +    G GLGL+I    +  HGG ++ ++ D G       
Sbjct: 578 GIPEAEIEAIFKPFVQSSRTKSGAGGTGLGLAICRRIMGAHGGRITAANRDGGGARFTIE 637

Query: 788 IPSK 791
           +P+ 
Sbjct: 638 LPAP 641


>gi|229522276|ref|ZP_04411692.1| sensor protein TorS [Vibrio cholerae TM 11079-80]
 gi|229340261|gb|EEO05267.1| sensor protein TorS [Vibrio cholerae TM 11079-80]
          Length = 984

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L + Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|253698664|ref|YP_003019853.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251773514|gb|ACT16095.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 755

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 117/228 (51%), Gaps = 3/228 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K  F+  VS+EL++PLT+I G   LL T +   L   + Q +     ++  L+ L
Sbjct: 520 QVDRMKTEFISTVSHELKTPLTSIKGSLQLLLT-RSKWLTDTERQLLTVCFRNTQRLIRL 578

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +++ILD++ +++G M  N+ ++ + +L     + I +     +I I       L     D
Sbjct: 579 ISEILDISGIESGGMIFNFKSLCIGELAVYAVEEIKSYAMGRDITIVNTVGEHLPMVFGD 638

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
             RL+Q+ + +LSNA+ FS +G  V++ A ++    + SV + G  I       +F +F 
Sbjct: 639 SDRLIQVMTNLLSNAVKFSPEGKVVMVTAEQEGNYVVVSVADRGRVIQWSDRDKLFKKFQ 698

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +  RG+  G GLGL+I +  +  H G +  +++ E   T +  +P
Sbjct: 699 QIESTERGKIGGTGLGLAICKEIVERHHGRIFYTAAKEYGNTFSFTVP 746


>gi|170692987|ref|ZP_02884148.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           graminis C4D1M]
 gi|170141985|gb|EDT10152.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           graminis C4D1M]
          Length = 720

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 8/212 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+ ++S+ELR+PL  I+G+  +L+     SL+    + V  I  S   LL L+ D L
Sbjct: 263 KGEFLANMSHELRTPLNAILGYAQILRRD--ASLSEHHREGVGVIQRSGEHLLALIGDAL 320

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQR 686
           D A V+AG +++  + + L   L+ +++ I  K+ + ++    +V  D    +  AD +R
Sbjct: 321 DFARVEAGRLRIEMNDVPLAGTLDAIREIIEVKIAQKHVEFIWRVAPDVP-DAVRADERR 379

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           L Q+   +L NA +++ +GS  +L      G   F V++ G  +  D  +++F  F  + 
Sbjct: 380 LRQVLLNLLVNAFNYTDQGSVSLLIEMSAAGKVCFEVRDTGIGMDADQLQTIFEPFEQIM 439

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  RG   G GLGL+I +  +   G  + + S
Sbjct: 440 HTERGA-SGTGLGLTISQQLLRAMGSEIHVQS 470


>gi|87309249|ref|ZP_01091385.1| PAS protein [Blastopirellula marina DSM 3645]
 gi|87287888|gb|EAQ79786.1| PAS protein [Blastopirellula marina DSM 3645]
          Length = 1309

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 146/315 (46%), Gaps = 37/315 (11%)

Query: 484  AATCSRYYNESDGWDLFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            +A+  R+    DG   +AA + T   DE   L G ++++ D                   
Sbjct: 880  SASDDRWMLRKDGTRFWAAGVTTGLLDENNKLLGFMKVMRDQ------------------ 921

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
               T+  R E  L +    L ++D  K  F+  + +ELR+PL  I    +++K  K    
Sbjct: 922  ---TERKRLEDELRQVAADLSESDRRKTEFLATLGHELRNPLAPIRTGLEMMKMVK---- 974

Query: 603  NSKQSQYVEYISAS----STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 + +E +  +    +  ++ L++D+LD++ + +G ++L    I LN+++    ++ 
Sbjct: 975  --NDPELIENVRGTMERQTQQMVRLIDDLLDVSRITSGKIELRTCQITLNEVIRSAVEAT 1032

Query: 659  ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               + E    ++V          AD  RL Q+FS +L+N+  ++  G  + L A  +NG 
Sbjct: 1033 QPFIDEAGHTLQVTLPETPIVLDADPNRLAQVFSNLLNNSSKYTPDGGHIWLAAQCENGK 1092

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             I ++K++G  IP D    +F  F  +         G+G+GL++V+  + LHGG + + S
Sbjct: 1093 AIVTIKDDGLGIPLDQQSQIFEMFAQIDRPLEMGYTGLGIGLTLVKQLVELHGGTIDVQS 1152

Query: 777  --SDEGVTTINCRIP 789
              +D+G +    R+P
Sbjct: 1153 EGADQG-SEFFVRLP 1166


>gi|238787449|ref|ZP_04631247.1| Multi-sensor hybrid histidine kinase [Yersinia frederiksenii ATCC
           33641]
 gi|238724236|gb|EEQ15878.1| Multi-sensor hybrid histidine kinase [Yersinia frederiksenii ATCC
           33641]
          Length = 888

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  +A  +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L S Q++  E  
Sbjct: 335 ALAKSKQAAEQANHRKSEHLTTISHEIRTPLNGALGAIELLQNT---PLTSAQNRLAETA 391

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  LL ++N++LD + +++G ++L      +  LL++   +I +++    I +    
Sbjct: 392 RQCSHSLLAIINNLLDFSRIESGQLELAQERTAILPLLDQAMLTIHSQVLSKAITLSTYV 451

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             ++    V D QRL QI   +L NA+ F+ +G  + L   R++    F+V++ G  I  
Sbjct: 452 SAEVPLQLVLDGQRLKQILINLLGNAVKFTQQGH-IRLNVEREDSQLCFTVEDTGCGIDL 510

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              + +F  F   +  GQ  G GLGL+I ++   + GG +++ S
Sbjct: 511 QHQQQIFRPFAQTSDYGQ--GTGLGLTIADNLARMMGGQITLYS 552


>gi|315180030|gb|ADT86944.1| para-aminobenzoate synthase [Vibrio furnissii NCTC 11218]
          Length = 568

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 12/242 (4%)

Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  ++E+ ++A+E + +   FV  +++ELR+PL  ++G  +LL  +   SL+ +Q  Y+ 
Sbjct: 188 MKRQDESCKRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDT---SLDPEQLSYLT 244

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S  +L  ++ND+LD + ++AG+M+L  +     DL + +    + K  E  I   V
Sbjct: 245 NLQHSGDMLRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKAREKKIEFVV 304

Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSS 729
            + G+  ++ + D +R+ QI   ++ NA+ F+ +G+  +  AAR  +   +  + + G  
Sbjct: 305 NTRGEFPTYWIGDVERINQILVNLVGNAIKFTHRGAVTV--AARWVDERLLLRISDTGIG 362

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     ++F+ F  V  +   Q  G GLGL+I ++ + L  G +  SS +   T     
Sbjct: 363 IPLAAHDTLFDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGEGTEFFVS 422

Query: 788 IP 789
           IP
Sbjct: 423 IP 424


>gi|300248807|gb|ADJ95232.1| ExpS [Erwinia chrysanthemi]
          Length = 922

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    L + Q  Y++ I  S+  LLN
Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTQLTTTQKDYLQTIERSANNLLN 340

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++ND+LD + ++AG + L      L++ L+EV   +A   HE  + + + I       FV
Sbjct: 341 IINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFV 400

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIF--SVKNNGSSIPEDMCKS 737
            D  RL QI + +L NA+ F+ +G+  I   K  ++N   +    +K+ G  I E     
Sbjct: 401 GDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQENLRVLLEIQIKDTGIGIAEAQQTQ 460

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F     +   Q  G GLGL I +  +   GG +S  S     TT  C +
Sbjct: 461 LFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCTV 513


>gi|271501843|ref|YP_003334869.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
 gi|270345398|gb|ACZ78163.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
          Length = 922

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    L + Q  Y++ I  S+  LLN
Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTQLTTTQKDYLQTIERSANNLLN 340

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++ND+LD + ++AG + L      L++ L+EV   +A   HE  + + + I       FV
Sbjct: 341 IINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFV 400

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIF--SVKNNGSSIPEDMCKS 737
            D  RL QI + +L NA+ F+ +G+  I   K  ++N   +    +K+ G  I E     
Sbjct: 401 GDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQ 460

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F     +   Q  G GLGL I +  +   GG +S  S     TT  C +
Sbjct: 461 LFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCTV 513


>gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 988

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 18/281 (6%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           E  ++ GT E+L   +         + Q  + F++++   + E  L     A   +++ K
Sbjct: 550 EDVNISGTYEILCFRIF--------SNQIAVMFMDISSRKQEEFELENAKRAAESSNKAK 601

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+PL  I+G   LL+++     + +QS+Y++   +S   L  L++DILD
Sbjct: 602 SEFLANMSHEIRTPLNGIMGMLQLLEST---DTDHEQSEYIDIALSSCRNLTRLISDILD 658

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           L+ ++ G + L      ++ L  EV  +  T++    I +    +  +   V  D  RL 
Sbjct: 659 LSRIEHGNITLENHGFNISHLTEEVINTFITELSSKEIELSTSIEKNIPEIVYGDSGRLR 718

Query: 689 QIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           QI   I  N++ F+S G   I   +   R        V + G  IPED    +F  F   
Sbjct: 719 QIIFNIFGNSIKFTSSGRIFINIDSLIQRQTIYLFIEVSDTGIGIPEDKLDEIFVPFTQA 778

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783
                R+  GVGLGLSIV+  +   GG +++ S+ D+G TT
Sbjct: 779 DGSLTRKYGGVGLGLSIVKKLLIAMGGTITVESNIDKGTTT 819


>gi|224536870|ref|ZP_03677409.1| hypothetical protein BACCELL_01746 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521536|gb|EEF90641.1| hypothetical protein BACCELL_01746 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 664

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 129/247 (52%), Gaps = 23/247 (9%)

Query: 553 RALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L +  E LRKA E+       K  F+Q++S+E+R+PL +I+GF+ +L    +  L+ K
Sbjct: 425 RTLIKAEEELRKAKEVAEQSNWLKTMFIQNMSHEIRTPLNSIVGFSGVL----VDMLDEK 480

Query: 606 Q--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +   QYV  I ++S +LL LV DILD++ +D+ + ++ ++ + +N      + SI     
Sbjct: 481 EDIGQYVALIESNSKLLLKLVGDILDISILDSEV-EIKHNAVDVNAC---CQASIDAAGA 536

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720
             +  +++I +      +  ++   ++Q+   +L NA  F+ +GS T+  +  ++    I
Sbjct: 537 SFDPGVRLIFEPACDELIINSNYSYIVQVLDNLLGNASKFTHEGSVTLAYEVKKEENQLI 596

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779
           F+V + G  IP +  + VF RFV   +  Q  G GLGLSI        GG++ I     +
Sbjct: 597 FTVTDTGIGIPVEEQERVFERFVKLDNFSQ--GAGLGLSICRIVAERLGGYLRIDKGYTQ 654

Query: 780 GVTTINC 786
           G   I C
Sbjct: 655 GTRVIFC 661


>gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 15/239 (6%)

Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R E A  +  E  R+A      K+ F+ ++S+E+R+P+  +IG   LL +     L ++Q
Sbjct: 144 RLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSE---DLTAEQ 200

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV+ I  S   LL L+N ILD + ++AG ++L+Y      +L+ EV   +  +    N
Sbjct: 201 LSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQN 260

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----- 720
           + +       L + V  D  RL Q+   ++ NA+ F+  G   I  +             
Sbjct: 261 LALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDFSC 320

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F+VK++G  IP +    +F RF        R+  G GLGL+I    + L GG V + S
Sbjct: 321 HFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVES 379


>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
 gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
          Length = 1763

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +++  N+T        L    E    A++ K+ F+ ++S+E+R+P+  IIG + L   ++
Sbjct: 1007 VMSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTE 1066

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            L   + KQ  YVE I  +S  LL ++NDILD + ++AG + +      L+ +L ++    
Sbjct: 1067 L---DRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMF 1123

Query: 659  ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARD 715
            + K  +  + +   ++ G       D  RL Q+   +++NA+ F+ +G  +  I + ARD
Sbjct: 1124 SVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARD 1183

Query: 716  NG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                   F+V+++G  +  +    +F  F        R+  G GLGL+I +  + L GG 
Sbjct: 1184 EDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGE 1243

Query: 772  VSISS 776
            + + S
Sbjct: 1244 IGVDS 1248


>gi|269928580|ref|YP_003320901.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787937|gb|ACZ40079.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 645

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 16/238 (6%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A++ A+++K+ F+  VS+ELR+P+T I G   LL  +        + + +  I+  S  L
Sbjct: 411 AIKDAEQLKDDFLSLVSHELRTPMTTIQGGALLLLQNGADLDEETRHEILTDIANESRRL 470

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGS 679
             LV +++ LA + AG   ++   + L  LL     ++  +  E+   + V  D   LG 
Sbjct: 471 AGLVENMVQLANIRAGRFGMDSEPVHLRTLLQRAIDAMQEQDPEHPFVLDVERDLLALG- 529

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSV 738
              D  RL Q+   +L NA+ ++   + + ++AAR DNG  I SV+++G  I E+    V
Sbjct: 530 ---DPGRLDQVVRNLLHNAIKYAPARTPIEVRAARGDNGTVIVSVRDHGPGIDEEDLPFV 586

Query: 739 FNRFVSNAHRGQR------RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F RF     RG++       G+GLGL + +  I  HGG + I    +G T I+  +P+
Sbjct: 587 FERF----QRGKQAVLRHTAGMGLGLYLSKHLIEAHGGQIWIERPPDGGTRIHFSVPA 640


>gi|254285731|ref|ZP_04960694.1| sensor protein TorS [Vibrio cholerae AM-19226]
 gi|150424228|gb|EDN16166.1| sensor protein TorS [Vibrio cholerae AM-19226]
          Length = 984

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L + Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|83310972|ref|YP_421236.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945813|dbj|BAE50677.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1036

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 13/247 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  R ++ L    EA   A++ K+ F+  +S+ELR+PL  I+GF  LL+TS+   L  
Sbjct: 637 LTNLERHQQELRLAKEAADSANQAKSDFLSSMSHELRTPLNAILGFAQLLETSRSSPLTD 696

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ    + I      LL L+N++LDLA ++AG + L+   +    L +EV     T+ + 
Sbjct: 697 KQRGQAQCIIKGGQHLLQLINEVLDLARIEAGNLALSLEEVEARPLFDEVMD--LTRAYA 754

Query: 665 NNIRIKVISDGKLGSFVA----DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              R+ ++     G+  +    D  R  Q+   + SNA+ + + G TV L       D +
Sbjct: 755 GG-RVAMVDASVPGATASHLRVDYTRFKQVLLNLTSNAVKYGASGGTVTLTMEPGAADSV 813

Query: 721 -FSVKNNGSSI-PED--MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            F V + G  I PE   +    FNR  + A   +  G G+GL+I +  +   GG +   +
Sbjct: 814 RFVVTDRGPGIAPEKQALLFRPFNRLGAEAT--EIEGTGIGLTISKQLVEAMGGRIGFET 871

Query: 777 SDEGVTT 783
           +    TT
Sbjct: 872 ATGRGTT 878


>gi|294495496|ref|YP_003541989.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666495|gb|ADE36344.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 575

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 129/229 (56%), Gaps = 14/229 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N+ L+K + +KN F+  VS+EL++PLT I   ++ L+          Q + ++ I 
Sbjct: 337 LENSNQRLQKLNRVKNEFLSMVSHELKTPLTAIRTSSEFLREEDYD--RETQEEMLDLII 394

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ---SIATKMHENNIRIKV 671
            +      +V+D+LD++ +++G M      + L ++++ V Q    +ATK H   I  ++
Sbjct: 395 RNIDRQSRMVDDLLDISRIESGRMVFKEEKVDLKEIIDNVIQMMEPMATK-HGIAIEREL 453

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFI-FSVKNNGSS 729
            +D ++    AD+ +LL++F  +L+NA+ F++ +G ++ +K   + GDF+  SV + G  
Sbjct: 454 DNDPRVK---ADKDKLLRVFVNLLNNAIKFTADRGESIKIK-TEETGDFVEISVIDKGIG 509

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IPE+  + +F +F  V +  R +  G GLGL+I++  I  HGG + + S
Sbjct: 510 IPENEQEKIFEKFYQVDSTSRRKVGGSGLGLAIIKGIIEGHGGSIRVKS 558


>gi|293414270|ref|ZP_06656919.1| TMAO reductase system sensor TorS [Escherichia coli B185]
 gi|291434328|gb|EFF07301.1| TMAO reductase system sensor TorS [Escherichia coli B185]
          Length = 914

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F+  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTLEVGSCFCLRLP 661


>gi|269958992|ref|YP_003328781.1| sensor histidine kinase [Anaplasma centrale str. Israel]
 gi|269848823|gb|ACZ49467.1| sensor histidine kinase [Anaplasma centrale str. Israel]
          Length = 469

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 9/244 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+ E   +    K+ F+ +VS+ELR+PL +IIGF++++++  LG + S+  +Y EYIS
Sbjct: 220 LQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSE--EYKEYIS 277

Query: 615 ---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S   LL+L+NDILD +  +A  + + +    L+ +++     +  +  +  + +K 
Sbjct: 278 DIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLSKIVDSSFTMVLPRAKDAKVELKK 337

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +    +AD +R+ Q+   ILSN++ F+ +G  V L         +  + + G  I 
Sbjct: 338 EMPEEPVVMLADPKRMKQVIINILSNSVKFTPEGGLVKLCTEIRGEQLVVEISDTGIGIA 397

Query: 732 -EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +D+ K  SVF +   + H  +  G GLGL + +  + L  G  SI S     T +    
Sbjct: 398 QQDLYKVMSVFGQ-ADSKHSRKYEGTGLGLPLSKKLVELMHGTFSIKSEPNLGTIVTLTF 456

Query: 789 PSKE 792
           P K+
Sbjct: 457 PHKQ 460


>gi|302518070|ref|ZP_07270412.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. SPB78]
 gi|302426965|gb|EFK98780.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. SPB78]
          Length = 391

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 142/308 (46%), Gaps = 30/308 (9%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R++  +D +   A I T   ++   L G  E+L  +  +Y + P P    +   V++ D+
Sbjct: 99  RWWRLTDPYGGLA-IRTRQPEKNLLLPGGREILVSA--QY-VRPRPRGPLVRLVVSLRDT 154

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
               R  TE++ A           +  V++ELRSPLT++ GFT  L  +K    N  Q +
Sbjct: 155 --GARRRTERSHA---------ELIATVAHELRSPLTSVKGFTATL-LAKWERFNDDQKR 202

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENN 666
             +E + A +  +  L+ ++LD++ +DAG M+L    + +       V+  IA     + 
Sbjct: 203 LMLETVDADAHRVTRLITELLDISRIDAGRMELRRQPVDIAGAAARHVQAHIAAGRSCDR 262

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIF 721
             + V     L +  AD  ++ Q+ S +L NA+     G TV +  A   G       + 
Sbjct: 263 FVVTVRR--PLPALWADPDKVDQVLSNLLENAVRHG--GGTVTIDIAPTAGGEGPEGTVI 318

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +V + G  IPE+    VF RF   + RG   G GLGL IV+  + +HGG +++  +  G 
Sbjct: 319 TVSDEGQGIPEESMNRVFTRFWRGSKRG---GTGLGLYIVKGIVEVHGGWITVGRAPRGG 375

Query: 782 TTINCRIP 789
                 +P
Sbjct: 376 ARFRFMLP 383


>gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99]
 gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia
           tasmaniensis Et1/99]
          Length = 909

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 15/232 (6%)

Query: 556 TEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVE 611
            E + A R+A E   IK+ F+ ++S+ELR+PL  +IGFT   LKT+    LNS Q  Y+ 
Sbjct: 277 VELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTA----LNSTQRDYLH 332

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +
Sbjct: 333 TIERSANNLLGIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTL 392

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NN 726
            I      + + D  R+ QI   +L NA+ F+  G+  I   K A  N      V+  + 
Sbjct: 393 NIQSDVPDNIIGDPMRMQQIIVNLLGNAIKFTESGNIDIRVEKRASSNNRMELEVQIHDT 452

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I +     +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 453 GIGISDKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHS 504


>gi|170076780|ref|YP_001733418.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169884449|gb|ACA98162.1| two-component hybrid sensor and regulator; PAS domain S-box protein
           [Synechococcus sp. PCC 7002]
          Length = 1076

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 9/247 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++ D  +AE AL +  EA   A   K+ F+  +S+E+R+P+  IIG  +LL  S+  
Sbjct: 524 THSDIGDRKQAELALIDAKEAAEAAAHAKSMFLATMSHEIRTPMNGIIGMLNLLLYSE-- 581

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q ++     +S+  LL L+NDILD + ++AG ++L      L+       + +A 
Sbjct: 582 GLTTEQQEHAHIALSSAESLLMLLNDILDFSKMEAGKLQLETVDFDLHQFFENFAKLMAF 641

Query: 661 KMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716
              E  + +     G + GS   D  RL QI + ++SNA+ F+++G  +I    +   D 
Sbjct: 642 AAQEKGLNLIFDLRGLRHGSIQGDPGRLRQILTNLVSNAIKFTNQGEVMIRCQTERVGDR 701

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS- 773
            DF  SV + G  I  +    +F  F        RR  G GLGL+I +    + GG +  
Sbjct: 702 LDFTCSVTDTGIGIAAEKLNDLFEPFTQLEAGTTRRYGGTGLGLAITQRLCQVMGGTIEV 761

Query: 774 ISSSDEG 780
           IS+  EG
Sbjct: 762 ISTPGEG 768


>gi|196037659|ref|ZP_03104970.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
 gi|196031901|gb|EDX70497.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
          Length = 896

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N++  V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVKFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|160936268|ref|ZP_02083641.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441078|gb|EDP18802.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1122

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 134/256 (52%), Gaps = 17/256 (6%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +T  ++T+  ++ R L E  E+  +A+  K++F+  +S+++R+PL  +IG T+L   S  
Sbjct: 464 VTLEDITEREQSRRRLEEALESEARANAAKSTFLASMSHDIRTPLNAVIGLTNLALYSPE 523

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----K 655
            S   K ++ ++ I+ SS +LL L+ND+LD++ +++G M+L  +   L + L+ V    +
Sbjct: 524 DS--KKVTECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLSGVVTVTQ 581

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---- 711
                +    ++ +  I+   L     D  RL Q+ + +L NA+ F+ K   + L     
Sbjct: 582 SQTGVRSQHFDVNVWNITHELL---CGDTVRLGQVLTNVLGNAVKFTPKDGEIYLDITEV 638

Query: 712 AARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINL 767
            ++D     F+F V + G  +  +    +F  F    N+++   +G GLG++I +  ++L
Sbjct: 639 PSQDPSFASFVFRVSDTGVGMSREYMGRIFEMFSRDQNSYKQGIQGTGLGMAITKRIVDL 698

Query: 768 HGGHVSISSSDEGVTT 783
            GG + + S  E  TT
Sbjct: 699 MGGTIRVESEPEKGTT 714


>gi|153829186|ref|ZP_01981853.1| sensor protein TorS [Vibrio cholerae 623-39]
 gi|148875299|gb|EDL73434.1| sensor protein TorS [Vibrio cholerae 623-39]
          Length = 984

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 121/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L + Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + ++S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLAS 677


>gi|88858788|ref|ZP_01133429.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
 gi|88819014|gb|EAR28828.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
          Length = 1483

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 130/260 (50%), Gaps = 17/260 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG--S 601
           N+T+ ++ E  L         A +IK  F+ ++S+ELR+PL  I G   +L+ SKL    
Sbjct: 720 NITERLKEEAELKLALHQADAASKIKTDFIANMSHELRTPLNAINGLLQILELSKLTQEQ 779

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++  S   E I  + TI     NDI+DL +V+ G + L      L++LLN +   + T 
Sbjct: 780 LSTLDSAKAEVIGLNQTI-----NDIMDLTSVERGELILEEQDFNLDELLNTIGTQLNTL 834

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716
             +  I I   +++    +   D  +L QI   I SNA+ FS KG  V    +  + R++
Sbjct: 835 ADDKPIEIHFSLTEDLPLAMHGDANKLKQILWNIASNAVKFSLKGEVVLSFSVTISNRNS 894

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                ++ + G  + +D  + +F+ F  V N++  Q  G+G+GL+I    + L GG + +
Sbjct: 895 FWLNIAISDTGIGVNQDKLEQIFDLFTQVDNSNTRQYGGLGIGLTIASQLVKLMGGSIKV 954

Query: 775 SSSDEGVTTINCRI---PSK 791
            S  +  +T +C +   P+K
Sbjct: 955 CSQLDAGSTFSCSVLMQPAK 974


>gi|67922645|ref|ZP_00516150.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
 gi|67855493|gb|EAM50747.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
          Length = 731

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 18/254 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+  +EK  AL + +  K+ F+  + +E+R+PL  + G T LL  ++L   + +Q ++V
Sbjct: 63  AEQKASEK--ALEELNLAKSEFLSMMGHEIRTPLNAVTGMTGLLLDTEL---SDQQKEFV 117

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL ++N+ILD + ++A  ++L  +   L   + EV +   ++  +  + + 
Sbjct: 118 NIIRNSGENLLTMINNILDFSKIEANKLELEEAPFELGLCIEEVLRLFVSQASQKKLELA 177

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----------RDNGDF 719
            + +    S  V D  RL QI + ++ NA+ F+ +G  VI  ++            N + 
Sbjct: 178 YLLEPNTPSGIVGDSTRLKQILANLIGNAVKFTPEGEVVIYVSSTVIEGGEGEVNPNYEL 237

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F+VK+ G  IP++ C  +F  F  V  +   Q  G GLGL I +    L GG + + S 
Sbjct: 238 RFAVKDTGIGIPKERCHRLFQPFSQVDASTTRQYGGTGLGLVISKRLSELMGGKMWVHSE 297

Query: 778 DEGVTTINCRIPSK 791
           +   +T N  + +K
Sbjct: 298 EGKGSTFNFTLRAK 311


>gi|327485718|gb|AEA80124.1| Sensor protein torS [Vibrio cholerae LMA3894-4]
          Length = 984

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 120/217 (55%), Gaps = 8/217 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   +L + Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQDT---TLTATQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG ++++++   L  L+ E  + + ++  E  I +    D  +  +   
Sbjct: 522 LNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVTQYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I ++ A D     F+V+++G  I E+   ++F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQATLFDA 641

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+  G GLGL+I    +   GG + + S
Sbjct: 642 F-TQADAGRRKLGGTGLGLAISRKLVQAMGGELQLDS 677


>gi|325262786|ref|ZP_08129522.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
 gi|324031880|gb|EGB93159.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
          Length = 723

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 144/294 (48%), Gaps = 27/294 (9%)

Query: 516 GTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER--------ALTEKNEALRKAD 566
           GT+++L+   + YS +   N+   + +F +V   V  ER        AL E  +  R A+
Sbjct: 250 GTVKILT---MTYSYVSAENSWDGIESFYSVGIDVTKEREEQERQSKALEEAYQTARVAN 306

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624
             K +F+  +S+++R+P+  I+G T + K +    L+SK+     ++ I  SS  LLNL+
Sbjct: 307 SAKTNFLSSMSHDIRTPMNAIMGMTTIAKAN----LDSKEKVCSCLDKIDTSSQHLLNLI 362

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVAD 683
           N++LD++ +++G + L    + L++LL  V +     + + +   +  I+  +    +AD
Sbjct: 363 NEVLDMSKIESGKIDLTLEEVNLHELLKSVSEICRPLISQKHQEFRSSIAQVRHKEVIAD 422

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKS 737
            +RL Q+   +LSNA+ ++ +G  + L+             + FS  + G  I ED    
Sbjct: 423 GERLKQVMLNLLSNAIKYTPEGGRISLRINELYSPNPKKSQYEFSCIDTGIGISEDFRPY 482

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           VF  F    +    + +G GLG++I E+ + +  G + + S     +     IP
Sbjct: 483 VFEPFWRAEDPRISKSQGTGLGMAITENIVRMMNGTIRVESKTGAGSKFTASIP 536


>gi|154492920|ref|ZP_02032546.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC
           43184]
 gi|154087225|gb|EDN86270.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC
           43184]
          Length = 827

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 6/220 (2%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+++R+PL++IIG+ +LL   +    + +Q  Y+E ++ S+  +L+LVN +LD   +++
Sbjct: 346 ISHDIRAPLSSIIGYIELLLRRRP---DERQRYYLENMTGSANHILSLVNGLLDFHRLES 402

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQRLLQIFSK 693
           G M++      +  L NE+  S         +   + +  +G    +  D  RL QI S 
Sbjct: 403 GQMEIQNVPFSVRTLFNEIYGSFRPIAEAKGLAFVLNMKEEGMDRIYSGDPIRLRQIVSN 462

Query: 694 ILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           +LSNA+ F+ +G  V I+K +  N     +V ++G  IPE+  + +F  F   +   +  
Sbjct: 463 LLSNAVKFTHEGRIVLIVKLSILNSQLTITVSDSGVGIPEEEQEKIFGEFARLSGTEKEE 522

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G GLGLSI    I L GG +S+ S     +     +P +E
Sbjct: 523 GFGLGLSITRKLIELMGGTLSLKSVPGKGSDFTIVLPLRE 562


>gi|310642599|ref|YP_003947357.1| sensory histidine protein kinase [Paenibacillus polymyxa SC2]
 gi|309247549|gb|ADO57116.1| Sensory histidine protein kinase [Paenibacillus polymyxa SC2]
          Length = 484

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 154/345 (44%), Gaps = 35/345 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSL---WKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +S+ V  F   G+I L+NP  +SL   WK  E +   G  +    A+            L
Sbjct: 138 MSDAVFTFDRSGQIILTNPPAQSLLDIWKKLEWQ---GRDLEEFGASVPEPL-----LPL 189

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++   +D               V +Y  +   +    +  +   +++R   A+    
Sbjct: 190 FHTVMDRGED---------------VGDYIHVKKGSWSVQMAPLYTDNAIRGAVAVLRDI 234

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K +++++ FV +VS+E+R+PL+ + G+++ L     GS   +  + V+ I   S  
Sbjct: 235 TEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAGS-PEESEELVQVIHDESLR 293

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLG 678
           +  LV D+LDLA ++AG   +    + +N+L+  V +    +  E  + +     D  L 
Sbjct: 294 MGRLVKDLLDLARMEAGHTDMYRQEVDVNELIERVHRKFTVRSKERGLILDYYEPDQHLL 353

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
              AD  RL Q+ + +L NA   +  G  V + A +  G+        +K+ G  I  + 
Sbjct: 354 LPEADEDRLEQVLTNLLDNAFRHTPSGKKVTIAADQIRGERNELIRIRIKDEGVGIASED 413

Query: 735 CKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +F+RF        RG+ +G GLGL+IV + +  HGG VS +S
Sbjct: 414 LPYIFDRFYKADKARVRGEDKGTGLGLAIVRNIVEAHGGSVSAAS 458


>gi|302342500|ref|YP_003807029.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639113|gb|ADK84435.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 591

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 131/269 (48%), Gaps = 17/269 (6%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           LE  ++ LP++      V V         LTE+    ++ +E++  FV +VS+ELR+PLT
Sbjct: 336 LEAQVVRLPDSAPQAGAVAVFHD------LTER----KRLEEVRRDFVANVSHELRTPLT 385

Query: 586 NIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            I G ++ L     G+L ++     +VE I+ +++ L  L  D+LDLA +++G  +L   
Sbjct: 386 AIRGSSETLLG---GALENQHYAKHFVEMIARNASRLERLTQDLLDLAAMESGREELVKE 442

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            I    L + V  ++     E  + ++     +    +A R+ L Q    +L NA+ ++ 
Sbjct: 443 AIDGASLADSVLATVGELAEERGVELERELPKESLRIMASRRHLEQAVLNLLDNAIKYTE 502

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIV 761
            G  V L      G    SVK++G+ I  +    +F RF  ++  R  Q  G GLGL+IV
Sbjct: 503 SGGKVTLALTEAEGQTRISVKDSGAGIAPEHLGRIFERFYRADKDRSRQMGGTGLGLAIV 562

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +     HGG V + S+    +T    +P+
Sbjct: 563 KHIAQKHGGRVEVESTPGQGSTFTLVLPA 591


>gi|238785764|ref|ZP_04629737.1| Multi-sensor hybrid histidine kinase [Yersinia bercovieri ATCC
           43970]
 gi|238713347|gb|EEQ05386.1| Multi-sensor hybrid histidine kinase [Yersinia bercovieri ATCC
           43970]
          Length = 928

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  +A  +A+  K   +  +S+E+R+PL   +G  +LL+ +   +L ++Q Q  E  
Sbjct: 383 ALAKSKQAAEQANRRKRMHLTTISHEIRTPLNGALGAVELLQNT---TLTTEQYQLAETA 439

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671
              S  LL ++N++LD + +++G M L+     L  LL++   ++ +++   ++ +   V
Sbjct: 440 RQCSQSLLAIINNLLDFSRIESGQMTLSQEKTALLPLLDQAMLAVHSQVLSQSVILSTYV 499

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            SD  L S   D QRL QI   +L NA+ F+ +G  + L   R +    F+V++ G  I 
Sbjct: 500 SSDVPL-SLELDSQRLKQILINLLGNAIKFTQQGH-ISLNIERQDKHLCFTVEDTGCGID 557

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +++F+ FV       R G GLGL+I ++   + GG +++ S
Sbjct: 558 IQHQQAIFSPFVQTC--DHRHGTGLGLTIADNLARMMGGEITLFS 600


>gi|282600301|ref|ZP_05973770.2| sensor kinase protein RcsC [Providencia rustigianii DSM 4541]
 gi|282565779|gb|EFB71314.1| sensor kinase protein RcsC [Providencia rustigianii DSM 4541]
          Length = 927

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 135/252 (53%), Gaps = 8/252 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++++  V+ E++L +  +A  +A++ K+ F+  VS+ELR+PL  IIG  +LL+     
Sbjct: 425 VLIDISIRVQMEKSLQDVADAAEQANQAKSMFLATVSHELRTPLYGIIGNIELLQRY--- 481

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ K  + V  +  SS++LL +++DILD + +++  +K+   +    D+   V  +   
Sbjct: 482 DLSDKAVRLVSTMDNSSSLLLQIISDILDFSKIESEQLKIENKSFNCRDVFAFVLANYVP 541

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              + +I +    +  +   + +D  RL Q+ S I++N++ F+  G  V+L   +D+   
Sbjct: 542 LASKKHISLYSYVEPNIPDLMLSDAVRLQQVISNIVNNSIKFTDSG-FVMLHVWKDSNYL 600

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +K++G  +   +   +F+ F  V + + G  +G GLGL+I E  INL  G ++++S 
Sbjct: 601 KIEIKDSGIGMTPAVVMQLFDPFFQVYDQNNGH-KGTGLGLAICEKLINLMDGDIAVNSQ 659

Query: 778 DEGVTTINCRIP 789
               +T   RIP
Sbjct: 660 AGLGSTFTIRIP 671


>gi|166712854|ref|ZP_02244061.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 916

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+  Q  Y E I  + 
Sbjct: 540 KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYTESIRRAG 596

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVND LDLA +++G ++L+     +  LL E++  +A    +  +R   +  G L
Sbjct: 597 AHLLRLVNDALDLARIESGRLELDLQPFSVRQLLAELEALMAPLAQDRGLRFS-LEIGLL 655

Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
           G   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  + 
Sbjct: 656 GDITASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 715

Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +F RF   +  R   R  G GLGL+I +      GGH+ + S
Sbjct: 716 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVIS 760


>gi|149189035|ref|ZP_01867324.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           shilonii AK1]
 gi|148837221|gb|EDL54169.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           shilonii AK1]
          Length = 779

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 140/269 (52%), Gaps = 20/269 (7%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           +PN++ MLT V+   S   +R+  EK   L  +A + +  F+  +S+ELR+P+ ++IG  
Sbjct: 181 IPNSEKMLTVVDDVTSEYQQRSALEKAHWLAEQAVQSRERFLATMSHELRTPIASMIGLL 240

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL      + N      ++ + +S+  L  LVNDILD + +D+  + L    +   DLL
Sbjct: 241 ELLSYE---NRNIADDYKLKSLMSSAKNLQLLVNDILDYSKLDSQGISLVEEFVSYTDLL 297

Query: 652 NEVKQSIATKMHENNIRIKVI------SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            ++      ++HE + R + +         ++   + D  RL QI + +LSNA+ F+ +G
Sbjct: 298 GDL-----VRLHEASARERGLVFETQWDSSEIEFILTDALRLSQIVNNVLSNAVKFTEQG 352

Query: 706 S-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
              V ++A + N   I  V + G  I  D  +S+F+ F       +R+  G GLGL+IV+
Sbjct: 353 KIKVTVRATKQNISII--VDDTGIGISPDKLESIFDPFRQADDSIERKYGGTGLGLAIVK 410

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
               L  G++SI+S++   T++   +P K
Sbjct: 411 KLTTLMSGYISINSTEGEGTSVMISLPLK 439


>gi|152988149|ref|YP_001351034.1| putative two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150963307|gb|ABR85332.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 750

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 18/223 (8%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD  K+ F+  +S+E+R+PL  I+G  +LL+ + LG    +  Q +  ++ +   LL ++
Sbjct: 255 ADRAKSRFLATMSHEIRTPLNGILGMAELLREASLG---ERDRQRLRALATAGEGLLAIL 311

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGS 679
           N++L  A ++            L  LL +V   +  +  EN  R+ +     + DG  G+
Sbjct: 312 NEVLHFARLEEAPDAPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGA 371

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGD--FIFSVKNNGSSIPEDMC 735
                Q L Q+ + +L NA+ F+  G   +   + AR+ G      SV ++G  IPE+M 
Sbjct: 372 ----EQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARNAGGERLRLSVADDGIGIPEEMH 427

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F RF        RR  G GLGL+I +  +   GG + + S
Sbjct: 428 ERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVES 470


>gi|229012457|ref|ZP_04169632.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048]
 gi|228748816|gb|EEL98666.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048]
          Length = 448

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ D+++  FV +VS+E +SPL++I GF+  L++  +     ++ +Y++ I   S  
Sbjct: 220 KSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSE--EERKRYLKIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    S
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIS 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           + S+ +NG  + ++    +F
Sbjct: 336 IEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEQEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHQGNVSVYSTKGEGTTVRVELP 447


>gi|171912397|ref|ZP_02927867.1| two-component hybrid histidine kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 956

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 117/248 (47%), Gaps = 15/248 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS------- 607
           L +KN  L + D +K  F  ++++ELR+PLT +I    L +  +L    S QS       
Sbjct: 216 LEQKNLQLVEMDRLKTDFFSNITHELRTPLTLMIA--PLQRLQRLYPAGSPQSGNGGAPS 273

Query: 608 ----QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                 +  I  ++  LL L+ND+LDLA+ + G M++++    L      + QS+    H
Sbjct: 274 SMLHDELTGIYQNALRLLKLINDLLDLASANVGRMRISHQRFSLRLFTGRLLQSVTNMAH 333

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + ++ +       L    +D+++L +I   +L NA+ F+ KG +V L     N   +F V
Sbjct: 334 QGDVAVHQQMPEHLEMVDSDQEKLEKILLNLLFNAVKFTPKGGSVTLITNTVNDFLVFEV 393

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I +     +F+RF        RR  G GLGL++V+      GG V   S     
Sbjct: 394 IDTGIGISQQNLPFIFDRFWQADSSVTRRHPGTGLGLALVKELATRMGGRVEAESIQGAG 453

Query: 782 TTINCRIP 789
           TT+   IP
Sbjct: 454 TTMRVLIP 461



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           L+++M   S    + + A+ +       +++NG  IP      +F+ F +    G+  G 
Sbjct: 839 LASSMTPDSAPPQIWISASSEGTATDILIRDNGPGIPATNLSRIFDPFFTTKPAGE--GT 896

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLS+    I  HGG++S  ++  G T    R+P
Sbjct: 897 GLGLSVCYRIITAHGGNISADAAPGGGTVFTIRMP 931


>gi|167919319|ref|ZP_02506410.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei BCC215]
          Length = 354

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  +  + + D  RL QI   ++ N + ++ +G   +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|167816182|ref|ZP_02447862.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 91]
          Length = 342

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L     ALR +   + S     S+ELR+P+  ++   +L++    G L  +Q + +
Sbjct: 71  AHRDLKRLQAALRAS---RGSLAT-ASHELRAPVNGMLALVELVRQ---GLLAPEQQRLL 123

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S   L  ++NDILD A+++AG   +  + + + +L++ V   +A   H   +R++
Sbjct: 124 GLVQDSGQSLARVLNDILDHASIEAGQFAIEKTRVDVRELVDSVSAMLAVHAHRKGLRLR 183

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           +  D  +  + + D  RL QI   ++ N + ++ +G   +   A D+ D     + ++ +
Sbjct: 184 LHVDANVPAAVLTDGNRLRQILVNLIGNGIKYTERGGVSVRVRAADDVDGMVELVATIVD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  I  D  + +F  F + A RG RR   G GLGL+I      L GG V+++S +   T
Sbjct: 244 TGIGIAADELRRLFTPF-ARATRGARRMESGTGLGLAIARKLARLLGGDVTLTSDEGRGT 302

Query: 783 TINCRI 788
           T   RI
Sbjct: 303 TATARI 308


>gi|150389093|ref|YP_001319142.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149948955|gb|ABR47483.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 471

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 15/255 (5%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLT 585
           +Y  I    AQ M+ + N       ER + EK   A  + D+IKN F  ++S+EL++P+ 
Sbjct: 179 DYVHIEKDYAQKMILYFN-------EREVAEKELVATLELDKIKNEFFGNISHELKTPVN 231

Query: 586 NIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I G   LL   +K G  N    +Y++ +  +   L+ LVN+++D   +D+G   LN   
Sbjct: 232 VIFGTVQLLDVQAKEG--NVCNDKYLKIMKQNCYRLIRLVNNLVDTTKLDSGFYDLNLQN 289

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + + +++  +  S+A  +    + ++  +D +      D +++ +I   +LSNA+ F+  
Sbjct: 290 VNVVNVVESITLSVAQYVEGKGLTLEFDTDVEEKVLACDSEKIERIMLNLLSNAVKFTDI 349

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           G  +I+         I SVK+ G  I P+D+ K +F RF  V  +      G G+GLS+V
Sbjct: 350 GGKIIVNMTDKGSHIIISVKDTGIGISPKDL-KVIFQRFKQVDKSLTRNSEGSGIGLSLV 408

Query: 762 ESFINLHGGHVSISS 776
           +S + +HGG V   S
Sbjct: 409 KSLVEMHGGRVYTES 423


>gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 992

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 18/228 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  + AD+ K+ F+  +S+E+R+PL  +IG + LL  ++L     KQ  Y+  I +S+  
Sbjct: 250 ELAKAADKAKSEFLARMSHEIRTPLNAVIGMSHLLLKTRL---TPKQEDYLAKIRSSADT 306

Query: 620 LLNLVNDILDLATVDAG---IMKLNYS-TIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           LL ++NDILD + ++AG   I ++ +    VL D++N +    A K  E    + V  D 
Sbjct: 307 LLRVINDILDFSKIEAGGLTIERIPFDLETVLGDVVNIMSLGAAEKQLE--FLLSVEDDV 364

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSI 730
             G  V D  RL Q+   ++ NA+ F+  G  V+L+  R      N    F+V++ G  +
Sbjct: 365 PFG-LVGDPLRLGQVLLNLVGNAVKFTESGE-VLLEVRRQPSTSQNARLRFAVRDTGVGL 422

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             +  + +F  F        RR  G GLGLSI +  + L GG + + S
Sbjct: 423 TAEQQEGLFRPFSQADESISRRYGGTGLGLSISQRLVALMGGDLEVRS 470


>gi|86144789|ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222]
 gi|85837688|gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222]
          Length = 808

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 117/221 (52%), Gaps = 12/221 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+E+R+P+  IIG + LL       +  +Q +YV+ ++ SS  LL+L+
Sbjct: 239 ANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM---DMPKEQKEYVDMLNTSSLTLLDLI 295

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + ++AG ++L    + +  +  +V+ +   K  +  ++ ++  D K+ + V  D
Sbjct: 296 NDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIPTMVIGD 355

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             +L Q+ + ++ NA+ F+  G  ++      +          F V ++G  I ED  +S
Sbjct: 356 GTQLRQVLNNLVGNAIKFTEHGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQS 415

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           VF++F        R   G GLGL+I +  + L G  + ++S
Sbjct: 416 VFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTS 456


>gi|189468438|ref|ZP_03017223.1| hypothetical protein BACINT_04835 [Bacteroides intestinalis DSM
           17393]
 gi|189436702|gb|EDV05687.1| hypothetical protein BACINT_04835 [Bacteroides intestinalis DSM
           17393]
          Length = 792

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 126/257 (49%), Gaps = 17/257 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +VT S R  R L E N   R A+E+   +   +  ++++ ++PL +I+G+ DLL  S+L 
Sbjct: 245 DVTRSNRYRRQLEEAN---RFAEELLASREKLMLAITHDFKAPLGSIMGYADLL--SRL- 298

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +++ +Q  Y++ +  SS  LL LV D+LD   +D    ++N  T     LL E+  S   
Sbjct: 299 TVDGRQRFYLDNMKTSSEHLLKLVTDLLDFHRLDLHKAEINRVTFHPARLLEEIYVSFEP 358

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 + +K   D +L G+F++D  RL QI + +LSNA+ F+S+G   +  +    GD 
Sbjct: 359 LTSAKGLSLKCEIDPELKGTFISDPLRLRQIVNNLLSNAVKFTSEGGITLTASFVPKGDP 418

Query: 720 IF-------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            F       SV + G  +     + +F  F          G GLGLSIV   + L  G +
Sbjct: 419 AFSGNHLKLSVIDTGKGMEPGDRERIFQEFTRLPGAQGEEGFGLGLSIVRMLVQLLEGRI 478

Query: 773 SISSSDEGVTTINCRIP 789
            + S     +T   R+P
Sbjct: 479 EVDSVLGKGSTFTLRVP 495


>gi|167764826|ref|ZP_02436947.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183]
 gi|167697495|gb|EDS14074.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183]
          Length = 1329

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 22/248 (8%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +R ER   EK E +    ++K  F  ++S+ELR+PLT II     L +S  G    ++  
Sbjct: 797  IRMERLDREKKEEI---SQMKIRFYVNISHELRTPLTLIISPLQELLSSVTGHWEREK-- 851

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKL-----NYSTIVLNDLLNEVKQSIATKMH 663
             + YI  ++  LL+LVN ++D    + GI +L     N    VLN  LN   +S+A K  
Sbjct: 852  -LLYIQRNARRLLHLVNQLMDYRRAELGIFELRPSYANAYKRVLNSFLN--YESLAKK-- 906

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +I     S+ +    + D   L  I + +LSNA  ++ +G  + +K  R++ + +  V
Sbjct: 907  -KDIDYNFYSELQDEDVLFDGTYLDLIINNLLSNAFKYTEEGERIYVKLYREDKNVVLQV 965

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G  IP+D  + +F RF  V N H G     G+GLS+V+  + LH G +++ S     
Sbjct: 966  ADTGVGIPKDKQRKIFERFYQVENVHEGS----GIGLSLVQRLVELHHGQITLVSEVGKG 1021

Query: 782  TTINCRIP 789
            +T +  IP
Sbjct: 1022 STFSIYIP 1029


>gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter
           bemidjiensis Bem]
 gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache,
           HAMP, PAS, PAC, PAS and HPT domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 1229

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++TF ++++  RAE  L    EA   A   K+ F+ ++S+E+R+P+   +G   LL+ ++
Sbjct: 602 VVTFFDISERKRAEAELIRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLQHTE 661

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+  Q  Y+E    +S +LL ++NDILD + V+AG M L  +   +  +L++++   
Sbjct: 662 ---LSETQKSYLEKAQTASGVLLGVINDILDFSKVEAGRMVLETTPFRMAAVLSDLQTVA 718

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARD 715
              + E  I         +      D  RL Q+   + SNA+ F+ KG   +  A  A++
Sbjct: 719 QATLREKPIEFVTRCGADIPEQLFGDPLRLGQVLLNLASNAIKFTEKGKVEVEVALLAQE 778

Query: 716 NGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            G+    FSV + G  +  +  +SVF  F        R+  G GLGL+I    + L GG 
Sbjct: 779 QGEVTLRFSVADTGIGMTTEQQESVFTPFTQADSSTTRKYGGTGLGLAISRELVQLMGGR 838

Query: 772 VSISS 776
           + + S
Sbjct: 839 MWVVS 843


>gi|42780166|ref|NP_977413.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
 gi|42736084|gb|AAS40021.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
          Length = 896

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +   + +             D+I  
Sbjct: 602 DTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWISI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 918

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTE----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 930

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 119/239 (49%), Gaps = 10/239 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V D  R ER L    +    A   K+ F+ ++S+E+R+PL+ IIG T +  +    +  
Sbjct: 415 HVKDRAR-ERDLERARKQAEAASRAKSGFLANMSHEIRTPLSGIIGLTQMTLSQ---TPR 470

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  +++E I  SS  LL +VNDILD + ++AG M+ +     L ++L+   +       
Sbjct: 471 PEVREHLELILDSSRSLLAIVNDILDFSKIEAGKMEFSPVDFDLREILDRTMKPFHFSSR 530

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF- 721
           +  +R+ +    +L   +  D  R++Q+   ++ NA+ F+ KG   +       GD +  
Sbjct: 531 QKGLRLSLRIAQELPDILHGDPDRIMQVVRNLVGNALKFTDKGEVAVEFRLLRPGDPMLV 590

Query: 722 --SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
             SV++ G  IPE+    +F  F    + R +R  G GLGL+I    + + GG + + S
Sbjct: 591 ECSVRDTGIGIPEERLPELFQVFSQLESSRTKRYGGTGLGLAISRRLVEMMGGTIGVRS 649


>gi|297199601|ref|ZP_06916998.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297147445|gb|EDY57506.2| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1376

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R+   L EK   L  + + K+ F+ ++S+ELR+PL +++    LL  +  G L+ ++ Q+
Sbjct: 923  RSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQF 982

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +      +  +  
Sbjct: 983  ATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTLDRGLAF 1042

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDF 719
            +V + +       +D QRL QI   +LSNA+ F++ G   +          +  RD+ D 
Sbjct: 1043 EVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTASGRVELRVNRIKDPDHRYVRDSDDV 1102

Query: 720  I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + F+V + G  I  +    +F  F        R+  G GLGLSI      L GG +   S
Sbjct: 1103 VAFAVSDTGIGIAREKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIVAES 1162

Query: 777  SDEGVTTINCRIP 789
                 +T    +P
Sbjct: 1163 EPGRGSTFTLYVP 1175


>gi|302418052|ref|XP_003006857.1| peroxide stress-activated histidine kinase mak1 [Verticillium
            albo-atrum VaMs.102]
 gi|261354459|gb|EEY16887.1| peroxide stress-activated histidine kinase mak1 [Verticillium
            albo-atrum VaMs.102]
          Length = 1773

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 19/223 (8%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K+ F+ ++S+E+R+PL  I G    L+ S    LN +Q  Y   I  S+  LL
Sbjct: 1109 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDS---VLNEEQRDYTNTIQTSANSLL 1165

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  + +  + +++
Sbjct: 1166 MIINDILDLSKVDAGMMKLKYEWFHTRALIEDVNELVSTMAIAKRLELNYVVEQNVPTWI 1225

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKG-----------STVILKAARDNGDFIFSVKNNGSS 729
              D+ R+ Q+   ++ NA+ F+S+G            T +L    +     F++ + G  
Sbjct: 1226 KGDKVRIRQVLLNVIGNAIKFTSEGEVFSRCRVYTSETAMLTP--NEIMLEFAIIDTGRG 1283

Query: 730  IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
              E+  + +F  F  +  +   Q  G GLGL I    + LHGG
Sbjct: 1284 FTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1326


>gi|170700649|ref|ZP_02891646.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170134421|gb|EDT02752.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 730

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 18/262 (6%)

Query: 532 PLPNAQTM---LTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
           P P A+ +   ++ V VT+ V A   L   N         LR A++ K+ F+  + +ELR
Sbjct: 304 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 363

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++              +  I      ++ L++D+LD++ +  G + L 
Sbjct: 364 NPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 419

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             ++ L D+++   +  +  + +   R+ V +D        D  RL Q+ + +L+NA  +
Sbjct: 420 KESLRLADIVDRAVEVASPLLEQRRHRLHVDADPDARCH-GDPVRLSQVVANLLTNAAKY 478

Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           +  G  + ++A    +G  I  V +NG+ IP D   S+F  F  +    +    G+G+GL
Sbjct: 479 TMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 538

Query: 759 SIVESFINLHGGHVSISSSDEG 780
           ++V S +NLHGG V   S+  G
Sbjct: 539 ALVRSLVNLHGGTVRADSAGPG 560


>gi|115361278|ref|YP_778415.1| histidine kinase [Burkholderia ambifaria AMMD]
 gi|115286606|gb|ABI92081.1| histidine kinase [Burkholderia ambifaria AMMD]
          Length = 742

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 18/262 (6%)

Query: 532 PLPNAQTM---LTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
           P P A+ +   ++ V VT+ V A   L   N         LR A++ K+ F+  + +ELR
Sbjct: 316 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 375

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++              +  I      ++ L++D+LD++ +  G + L 
Sbjct: 376 NPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 431

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             ++ L D+++   +  +  + +   R+ V +D        D  RL Q+ + +L+NA  +
Sbjct: 432 KESLRLADIVDRAVEVASPLLEQRRHRLHVDADPDARCH-GDPVRLSQVVANLLTNAAKY 490

Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           +  G  + ++A    +G  I  V +NG+ IP D   S+F  F  +    +    G+G+GL
Sbjct: 491 TMPGGDITVRATHGVDGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 550

Query: 759 SIVESFINLHGGHVSISSSDEG 780
           ++V S +NLHGG V   S+  G
Sbjct: 551 ALVRSLVNLHGGTVRADSAGPG 572


>gi|320158481|ref|YP_004190859.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
 gi|319933793|gb|ADV88656.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
          Length = 1199

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 128/255 (50%), Gaps = 11/255 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F +++D  + E AL E N A  +A E +N F+  VS+ELR+P+  ++G  ++L + +L  
Sbjct: 640 FSDISDLKQTELALRESNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEIL-SHRLS- 697

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            NS+  Q ++    S+  L   VNDILD + ++A  ++L+     + + L  V +S    
Sbjct: 698 -NSESQQLLDNAICSAERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPVLRSFEAS 756

Query: 662 MHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                ++  V    +  +++    D  R+ QI S +LSNA+ F+  G   +  A  +N  
Sbjct: 757 AQLKGLQFDV--HWQPTAYIDAQYDALRVNQIVSNLLSNAVKFTEVGQIKVAIACDENA- 813

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               + + G  + E     VF  FV       RR  G GLG+SIV+S ++L GG ++  S
Sbjct: 814 LSIEIVDTGCGMTEAQLDCVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMGGTIAFYS 873

Query: 777 SDEGVTTINCRIPSK 791
             E  T ++  IP K
Sbjct: 874 ELEQGTKVSVWIPVK 888


>gi|332829445|gb|EGK02094.1| hypothetical protein HMPREF9455_01728 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 576

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 145/293 (49%), Gaps = 3/293 (1%)

Query: 498 DLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           DL   +I    D   K  +G L++ SD    Y    + + +   T  N+T+ +     L 
Sbjct: 282 DLIRTLIVELIDPLAKRDEGPLKIFSDDKQSYFEKEIIHIEINKTGENITELI-GYVILL 340

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +     ++ D  K +F+  +S+EL++P+++I   T LL+ ++ G LN +Q Q V+ I   
Sbjct: 341 KNITIFKELDSAKTNFIATISHELKTPISSIKMSTQLLEHNETGILNDEQKQLVDGIKED 400

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           ST LL +  ++L+++ V+ G ++LN  +     ++     ++  +     I+++V  +  
Sbjct: 401 STRLLQITGELLNMSQVETGNIQLNIQSTDPGLIVRYAIDTVKLQAEHKRIKLQVDMEPD 460

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +   VAD ++   +    L+NA+ +S + S + +   R+N   +FSVK+ G  I     K
Sbjct: 461 IPLIVADAEKTAWVLINFLTNAIRYSMEDSDIEVSLRRENKGALFSVKDFGKGIDSRYKK 520

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F R+        + G GLGL+I + FI   GG + ++S+    +T    IP
Sbjct: 521 KIFERYFQ-IPGSLKSGSGLGLAISKEFIETQGGTIGVNSNPGMGSTFFFIIP 572


>gi|324325033|gb|ADY20293.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 896

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|331682500|ref|ZP_08383119.1| TMAO reductase sytem sensor TorS [Escherichia coli H299]
 gi|331080131|gb|EGI51310.1| TMAO reductase sytem sensor TorS [Escherichia coli H299]
          Length = 904

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 119/219 (54%), Gaps = 9/219 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA++ K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KANQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            FV  +  G+R G GLGL+I        GG +S +S+ E
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPE 641


>gi|303248386|ref|ZP_07334646.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490184|gb|EFL50102.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 651

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 128/256 (50%), Gaps = 10/256 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +VT   + E  L E  +    A+  K  F+ ++S+E+R+PL  I+G    L+ +   
Sbjct: 234 TIQDVTAQKQIEADLIESRQRAELANSAKTEFLANMSHEIRTPLNGILGMLQALEDT--- 290

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + +++Q +++     +S  L  L+NDILDL+ ++AG +++      L++L+  +++  + 
Sbjct: 291 APSAEQQRFIGAAIRASRRLAQLLNDILDLSRIEAGKIRITPGPFKLSELVASIEELFSY 350

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
              +  + +   ++ G     + D  R+ QI   ++ NA+ F+++GS  +    ++    
Sbjct: 351 SARKKGLSLSFSVASGIPNDLLGDAVRIRQILFNLIGNAIKFTNQGSVSLTIEPIRVEEQ 410

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
               +F+V + G  IPE +   +   F           +GVGLGLSIV+    L  G V+
Sbjct: 411 RIRLLFTVADTGIGIPETLMAHICEPFTQARPDTLPPTQGVGLGLSIVKKLTRLMNGEVT 470

Query: 774 ISSSDEGVTTINCRIP 789
           + S +   TT++  +P
Sbjct: 471 LESREGHGTTVSLSLP 486


>gi|262274843|ref|ZP_06052654.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262221406|gb|EEY72720.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 808

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 3/232 (1%)

Query: 563 RKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           RK DE +KN FV  VS+ELR+PLT+I G   ++     G L  K  + +     +   L 
Sbjct: 442 RKKDEAMKNEFVATVSHELRTPLTSIRGALGIILGKFSGELPDKTQKMLTLALRNCERLT 501

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILD+  +++G M  +++   L  ++    +        + I +   SD +     
Sbjct: 502 LLINDILDIEKLESGAMLYHFNRCNLYSIIARSIEDNTGYAKHHQITVTFESDTETAYIN 561

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  R+ Q+ + +LSNA+ +S  G  V +    +   F   + ++G+ IP +  + +F R
Sbjct: 562 ADSTRMQQVMANLLSNAIKYSKSGGEVNVTLENNGSSFRVEITDHGAGIPPEFHEHLFTR 621

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F        RR  G GLGL+I +S I  H G +   S  +   T    +P++
Sbjct: 622 FSQADSSDTRRVGGTGLGLAIAKSIIEAHKGQLHFFSVPKQGATFFFTVPNE 673


>gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 611

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 14/241 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYIS 614
           EK EA R+       FV +VS+ELR+PLT I  +T+ L+    G++   +   ++V  I 
Sbjct: 374 EKLEASRR------EFVANVSHELRTPLTTIKSYTEALED---GAMEDPELGPRFVSVIQ 424

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + +  ++ LV D+L L+  D+   +L      + ++L +V    + +M E  I+  +   
Sbjct: 425 SQTERMIRLVTDLLHLSRFDSHEAELRKQPTNVMEMLEDVVDRFSFQMQEKEIKPTLFIA 484

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPED 733
             + +   DR ++ Q+   ++SNAM ++ +G  + L+A   ++     SV++ G  IP+ 
Sbjct: 485 NDVDTAWIDRDQIDQVLDNLISNAMKYTPEGGAIALEARLTEDRQLAISVQDTGIGIPKK 544

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F RF  V  A      G GLGLSI    +  HGG +S+ S     T +   +P++
Sbjct: 545 DLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTISLQSELGKGTKVTFTLPAE 604

Query: 792 E 792
           +
Sbjct: 605 K 605


>gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC
           35469]
 gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia fergusonii ATCC 35469]
 gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
           ECD227]
          Length = 918

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +   G +  + 
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKGDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+ +G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTERGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|162448801|ref|YP_001611168.1| hypothetical protein sce0531 [Sorangium cellulosum 'So ce 56']
 gi|161159383|emb|CAN90688.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1152

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 9/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTIL 620
           ++ A+ +K+ F+  VS+ELR+PL  I+G+  +++    GSL+   +++ +  +  ++   
Sbjct: 766 VQDANRLKDEFLGTVSHELRTPLNAILGWARMMQA---GSLDRVAETRALSAVERNAEHQ 822

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + L++++LD + V  G +K+    + L   +    +SI        + I+   D + G F
Sbjct: 823 VTLIDELLDASQVVTGTLKIERLAVELTLPVQTAVESILPSAAGKGVAIETRLDPE-GVF 881

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           V  D  RL Q+   +LSNA+ F+  G  V ++ ++D       V ++G  I  D    VF
Sbjct: 882 VEGDPARLQQVVWHLLSNAVKFARPGGLVQVQLSQDERFAEIKVIDDGEGISADSLPHVF 941

Query: 740 NRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            RF    + G RR    GLGLSIV   + LHGG V ++S+  G  TT   ++P
Sbjct: 942 ERFRQEDNSGARRHGGLGLGLSIVRHIVGLHGGMVRVTSAGPGRGTTCTVQLP 994


>gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
 gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
          Length = 1370

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 790  QARQELETRAQELSLASRYKSEFLANMSHELRTPLNSLLILAQLLAQNPSHNLTPKQVEY 849

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M ++   + L  LL+ V+ +      + ++  
Sbjct: 850  AGIIHSAGSDLLQLINDILDLSKVEAGKMDISPERVPLRRLLDYVEATFRPMTSQKSLEF 909

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----------VILKAARDNG 717
             V  + G     + D  RL Q+   +LSNA+ F+ +G             V +   R+  
Sbjct: 910  AVSTAPGVPVDLLTDDSRLRQVLRNLLSNAVKFTERGRVELLIEPAQAHDVPVSVHREGA 969

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F VK+ G  I     +++F  F        R+  G GLGLSI     +L GG V++ 
Sbjct: 970  VVAFHVKDTGIGIAAHQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVE 1029

Query: 776  SSDEGVTTINCRIP 789
            S+    +T    +P
Sbjct: 1030 STPGQGSTFTLYLP 1043


>gi|330792802|ref|XP_003284476.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum]
 gi|325085619|gb|EGC39023.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum]
          Length = 1555

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 127/243 (52%), Gaps = 12/243 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           V++ D+  A + L   ++ LR+A+EI ++   F+  VS+E+R+P++ I+    +L  S  
Sbjct: 645 VSIIDTT-ARKKLIIADQQLRRAEEINDAKIRFLTTVSHEVRTPISGILSSVGILDES-- 701

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             ++S Q +Y+ +I  S+  LL+L+ DILD + ++AG M+L      L  +L +    + 
Sbjct: 702 -LVDSNQREYLGFIKDSADYLLDLITDILDFSKIEAGKMELERVEFNLLKMLEDSINIVY 760

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714
              H+  I +    +  +  F + D  R+ Q+    LSNA+ F+SKG  ++    ++   
Sbjct: 761 RNAHDRGINVIHFVEPDVPIFLIGDSHRIKQVLLNYLSNAIKFTSKGQVMVKVSLVEKTN 820

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +    +FSV+++G  I ++  + +F  F       Q  G GLGLSI +    + GG V  
Sbjct: 821 EGIKVMFSVEDSGVGIKDEFQEQLFQPFHQVGSLRQYLGTGLGLSISKRLTAMMGGEVGF 880

Query: 775 SSS 777
            S+
Sbjct: 881 RST 883


>gi|300868943|ref|ZP_07113548.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333066|emb|CBN58740.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1739

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 124/269 (46%), Gaps = 35/269 (13%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            AL +   A   A+  K+ F+  +S+ELR+PL  I+GFT ++  S+  +LN +Q + +  I
Sbjct: 1231 ALQQAAIAADTANRAKSEFLAAMSHELRTPLNAILGFTQVM--SRDPTLNQQQQENLGII 1288

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + +   LLNL+NDIL+++ ++AG  +LN S   L  LL  +++ +  K     + +    
Sbjct: 1289 NRAGEHLLNLINDILEMSKIEAGQAELNLSNFDLIGLLFSLEEMLRLKAESKGLHLIFDI 1348

Query: 674  DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGD----------- 718
               +  +V AD  +L QI   IL NA+ F+ KGS  +    K    N             
Sbjct: 1349 APDVPQYVQADEGKLRQILINILGNAVKFTEKGSVTLRVRNKEIATNASISDRLELTDRV 1408

Query: 719  -----------------FIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSI 760
                               F VK+ G  I  +    +F  F  +   R  ++G GLGL I
Sbjct: 1409 ESINYPSSLLPITSSLCLQFEVKDTGPGISPEEINQLFEAFTQTETGRKSQQGSGLGLPI 1468

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIP 789
             + F+ L GG +++ S  +  T     IP
Sbjct: 1469 SQKFVQLMGGDIAVRSILKWGTAFTFDIP 1497


>gi|299537380|ref|ZP_07050678.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298727172|gb|EFI67749.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 462

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 124/235 (52%), Gaps = 5/235 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA+++ DE + +F+  VS+ELR+P++ + G+++ ++   +     ++ + ++ I   +  
Sbjct: 230 EAIQQEDEAQKTFLATVSHELRTPISYVKGYSEAMQNGIITE--GQKEETIQLIVREANR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L N++L LA  +    +++   I L + L EV++ +  + ++ NI + +  D  L  
Sbjct: 288 MERLTNELLQLARTENEQTEIDLYPIPLGETLREVQKILTHQANKKNITLYLDVDDAL-I 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  +L QIF  I+ NA+++S + S V + AA   G    ++++ G  IP +    V 
Sbjct: 347 IEADEVKLKQIFINIIENAINYSHENSKVEIVAAEKAGSAQITIRDYGIGIPAEDLTHVT 406

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  V+ A      G GLGLSIVE  +    G + I S  E  T++  R+P  E
Sbjct: 407 ERFYRVNKARSRADGGSGLGLSIVEQLLKQLQGTLEIESVVEKGTSVKIRLPLME 461


>gi|296272592|ref|YP_003655223.1| integral membrane sensor hybrid histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096766|gb|ADG92716.1| integral membrane sensor hybrid histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 765

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 9/237 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N    + +E  +    E    A++ K+ F+  +S+ELR+PL  I+GF+++LK S    +N
Sbjct: 295 NTKKLIESEHQIKLAMEEANSANKAKSIFLARMSHELRTPLNAILGFSNILKKS----MN 350

Query: 604 SKQSQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           + Q +   +  I  S   LLN++N+IL+L+ ++AG +++      L +L+ ++    A +
Sbjct: 351 ATQEEKNNLNIIKRSGEHLLNIINEILELSKIEAGKIEIIPKVFNLKELIEDINSIFAFR 410

Query: 662 MHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             E  +  K+I D  L   V  D  RL QI   +LSN++ F+++G  + L     +    
Sbjct: 411 CKEKGLEFKIILDDNLPEVVKMDELRLRQILINLLSNSLKFTNEGE-ISLYLYEKSQKLF 469

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776
           F +K+ G  I     K VF  F    H    + G GLGLSI +  + L  G +   S
Sbjct: 470 FEIKDTGIGIESKDLKRVFKPFEQIKHDDYNKNGTGLGLSITKELVTLMNGSIYAKS 526


>gi|150008612|ref|YP_001303355.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937036|gb|ABR43733.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 638

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 19/248 (7%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +A++AL  + E+L +A       D +K+ F+ ++S+E+R+PL  IIGF+ L+  ++L   
Sbjct: 395 QAQKALLHEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLI--AELDLT 452

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ QY   I+ ++ +LL LVNDILDLA +++G +  +  +  L DL+  + +   + +
Sbjct: 453 AEEKEQYANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLVKTLYKQHLSDV 512

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIF 721
            E  I  K            D++RL Q    IL NA+ F+S G   I      N  D   
Sbjct: 513 PE-GIEFKEKCPDTPICLYTDKERLYQALENILKNAIKFTSAGFIEIGYEYSTNAQDVRL 571

Query: 722 SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I PED  +++F RF       Q  G GLGLSI ++ +    G + + S    
Sbjct: 572 YVQDTGIGISPEDQ-EAIFERFKKLDDFVQ--GTGLGLSICQAIVKQLNGRILLKSEKNK 628

Query: 781 VTTINCRI 788
                CRI
Sbjct: 629 ----GCRI 632


>gi|126650115|ref|ZP_01722348.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126593287|gb|EAZ87249.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 591

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 133/265 (50%), Gaps = 14/265 (5%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           ++I PL + +      N+  +V   R +TE++    + +++++ F+ +VS+ELR+P+  +
Sbjct: 336 FTISPLYSGE------NIRGAVAVIRDMTEQH----RLEKLRSDFIANVSHELRTPIAML 385

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G+++ L          ++++  + I   S  +  LV D+LDLA +++G M L    + +
Sbjct: 386 QGYSEALMDDDFIQDLEERNEITKIIYDESKRMGRLVTDLLDLARMESGHMTLYKDELPI 445

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
           N     + Q  A    E +IR+   S+    + +  D  R+ Q+ + ++ NA+  + +GS
Sbjct: 446 NSTFERITQKFAQVAKEKHIRLLFDSEFNDDAMINIDEDRIEQVLTNLVDNALRHTEEGS 505

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
            V +K  ++      SV++ G  IP+D    VF RF     A    + G GLGL+I  + 
Sbjct: 506 -VTVKVEQEPTFAKISVQDTGHGIPQDDLPYVFERFYKADKARTRSKGGTGLGLAIARNI 564

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I  H G++ + S  +  TT    +P
Sbjct: 565 IKAHSGNIMVDSVLKEGTTFTFYLP 589


>gi|329939380|ref|ZP_08288716.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329301609|gb|EGG45503.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 595

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 13/239 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+ E L   +  + S V  V++ELRSPLTNI  +   L+ ++ G +     Q ++ + 
Sbjct: 364 LAERRELL---EAQRTSMVNDVAHELRSPLTNIRSW---LEAAQDG-IAPTDRQLLDLLF 416

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L ++++D+ DLA  D G + L+Y  + + D+L++V     ++     + +++  D
Sbjct: 417 DEAGALQHIIDDLRDLAAADTGELALHYEMVRVADILDQVVAGQRSRAEHAGVALEIHVD 476

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PE 732
                  AD  RL Q+   ++ NA+  +  G  + L   R  GD +   V++ GS I PE
Sbjct: 477 EDKHEVCADPLRLRQVIGNLVGNAVRHTPSGGRISL-TCRHLGDEVRIEVRDTGSGIAPE 535

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D+   +F+RF        RR  G GLGLSI       HGG +++ S+    TT    +P
Sbjct: 536 DL-PHIFDRFWRAEKSRNRRTGGSGLGLSIARKLTEAHGGTITVRSTLAEGTTFTVAVP 593


>gi|319900476|ref|YP_004160204.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319415507|gb|ADV42618.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 725

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 16/239 (6%)

Query: 553 RALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L +KN+ L       + A+ +K+ F+Q++S+E+R+PL +I+GF+ L+    +     +
Sbjct: 478 RQLQKKNQELAVARDEAQSANRMKSLFIQNMSHEIRTPLNSIVGFSQLIANPDMELEPEE 537

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE- 664
           Q +Y E I ++S +L  LVND+L L+ + +G      ++    DL  E   SIAT  H  
Sbjct: 538 QQEYSELIVSNSELLTTLVNDLLGLSELQSGKYVTKIASHSCADLCRE---SIATVTHRK 594

Query: 665 -NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIF 721
             ++++    D     + + D QR+ Q+    L+NA   + +G   +  +  +  G   F
Sbjct: 595 PQDVKLYYTCDTPPDYTILTDGQRVRQVLINFLTNAEKHTERGEIHLHCSLTEVPGSVTF 654

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           SV + G  IP +  + +F RF       Q  G GLGLSI     +  G  V + +S +G
Sbjct: 655 SVADTGCGIPPEQAEHIFGRFEKLDDFSQ--GFGLGLSICRLIADYMGAAVKLDTSYKG 711


>gi|70733602|ref|YP_257242.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens
           Pf-5]
 gi|68347901|gb|AAY95507.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens
           Pf-5]
          Length = 594

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 158/353 (44%), Gaps = 23/353 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +D + +G+ +    GR++  NP  +     ++ RL  G     + +   R   E D  +
Sbjct: 262 VLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDQERLGQG-----LGSALQR--PELD--E 312

Query: 499 LFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556
               ++   + ER      +E+  +S +L YS+ P+ + Q  +L  V V   V  +RA  
Sbjct: 313 QLQLVLRGGNLERAPDDLDIEVDGESRLLTYSLTPVSHTQGHILGAVMVLHDVTEQRAF- 371

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                    + +++ FV   S+ELR+P+T +     LL+        S+++  +  ++  
Sbjct: 372 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFPEESRETDLLNTVNEE 422

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L+ L+ND+L+ +    G+ KL  +   L +LL + +   + +  +  I + +     
Sbjct: 423 MQRLMQLINDLLNFSRYQNGLQKLTLAPCPLEELLVQAQGRFSEQAQQQGIDLLLEIQAP 482

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L    ADR +L ++   ++ NA+  ++    + L+A R     I SV++NG  I      
Sbjct: 483 LPRLHADRAQLERVLDNLIDNALRHTASEGQIRLQARRHGERVIVSVEDNGEGIAYGQQG 542

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  FV    +  + G GLGL++ +  + LHGG + + S     T     +P
Sbjct: 543 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYLALP 593


>gi|307265090|ref|ZP_07546650.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390846|ref|ZP_08212398.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306919888|gb|EFN50102.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993105|gb|EGD51545.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 470

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L + ++++  FV +VS+ELRSPLT+I G+ D +    +     K   Y++ +   +  + 
Sbjct: 241 LEQLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPK--EKACDYLKIVQKETRRMS 298

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ND L++  +++G   LN +   +N+L+         ++ E ++ +KV  +      +
Sbjct: 299 RLINDFLEMTKLESGQFPLNKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVI 358

Query: 682 ADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVF 739
           AD+ ++ Q+ + ++ NA+ FS  KG   I    +D+  FI ++K+NG  I PED  + ++
Sbjct: 359 ADKDKIEQVLTNLIDNAIKFSKEKGIIHIFTEIKDDKAFI-TIKDNGIGISPEDQ-EHIW 416

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +RF        + G GLGL IV+  IN H   + + S     T     +P K+
Sbjct: 417 DRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESELGKGTAFTFTLPMKK 469


>gi|237743472|ref|ZP_04573953.1| sensory transduction protein kinase [Fusobacterium sp. 7_1]
 gi|229433251|gb|EEO43463.1| sensory transduction protein kinase [Fusobacterium sp. 7_1]
          Length = 623

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 123/241 (51%), Gaps = 6/241 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V   + L+   E    A++ KN F+  +S+E+R+PLT IIG++ +L   ++  ++SK+  
Sbjct: 140 VERTKELSISKEVAESANKAKNEFLAKISHEMRTPLTPIIGYSRIL-LKEINDVSSKEK- 197

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E I  S   LLN  N++LD + +++G + LNY T  +  L  ++           NI 
Sbjct: 198 -LEIIHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRKLFQDIYHEHIDLAKMKNIN 256

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            K+       S  +D+ ++ +I   I+ NA+ ++ KG  V+     +     F+V ++G 
Sbjct: 257 FKIDYLHANVSIYSDKIKIYEIAKNIIHNAIKYTEKG-FVLCDIFVEKNTLFFNVYDSGI 315

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + E+  K++F  FV   +  ++ G GLGLSI +  + +  G + + S     +T   +I
Sbjct: 316 GMSEENIKNIFESFVQIGN--EQSGAGLGLSITKKLLEVLNGKIEVESKVGIGSTFKIQI 373

Query: 789 P 789
           P
Sbjct: 374 P 374


>gi|255936613|ref|XP_002559333.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583953|emb|CAP91977.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2272

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 14/230 (6%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A   K+ F+ ++S++LR+P+  +IG ++LLK + L   + +Q +YVE I   +  LL L+
Sbjct: 1829 AARAKSIFLANISHDLRTPMNGVIGLSELLKGTYL---DKEQDEYVESIRVCADTLLTLI 1885

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--A 682
            NDILD + ++AG MK++   + L   ++EV +++     +  +      D      V   
Sbjct: 1886 NDILDFSKLEAGKMKISTVPLNLKQTISEVIRALRYTHRDRGLETIENLDKVPPELVVLG 1945

Query: 683  DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSV 738
            D  RL QIF  +LSN+  F+  GS TV  + AR+    +    SV + G  IP++    +
Sbjct: 1946 DPVRLHQIFMNLLSNSYKFTPAGSVTVKARVAREGTGRVRLECSVSDTGIGIPDEQKARL 2005

Query: 739  FNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
            F  F S A     R   G GLGLSI ++ I ++ GG + + S     TT+
Sbjct: 2006 FRPF-SQADASTERSYGGSGLGLSICKAIIEDVLGGAIWLESKPGVGTTV 2054


>gi|168703335|ref|ZP_02735612.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
            2246]
          Length = 1244

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 114/231 (49%), Gaps = 14/231 (6%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            ++  +L +AD  K++F+  +++ELR+PL  I     LL +  L     +++  +  ++  
Sbjct: 860  QREASLLRADVQKDAFLATLAHELRNPLAPIADVAHLLGSGGLDDGRLREAGAL--LAGQ 917

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              +L  LV+D+ DL+ V  G ++L    + L D++    ++ A  +     R+ +    +
Sbjct: 918  VRLLTRLVDDLTDLSRVRRGAVELRCEPVALADVIRTAVETSAPHIRAAGHRLSLERRSE 977

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                  D  RL Q+ S +L+NA  ++  G  V L   RD  + +  V+++G+ I   +  
Sbjct: 978  PVIVRGDAVRLAQVVSNLLTNAAKYTPPGGNVWLALDRDGTEAVVRVRDDGAGIDPALLP 1037

Query: 737  SVFNRFVSNAHRGQRR-------GVGLGLSIVESFINLHGGHVSISSSDEG 780
             VF+ FV      +RR       G+G+GL++ +  + LHGG +   S+  G
Sbjct: 1038 RVFDMFVQ-----ERRLQEQAPGGLGVGLTLAQQIVELHGGAIDARSAGPG 1083


>gi|163750003|ref|ZP_02157247.1| sensor histidine kinase/response regulator [Shewanella benthica
           KT99]
 gi|161330277|gb|EDQ01258.1| sensor histidine kinase/response regulator [Shewanella benthica
           KT99]
          Length = 937

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L+S Q  YV  I  S
Sbjct: 292 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYVNTIEKS 346

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +T LL  +NDILD + ++AG M L      L + L++    ++    + +I + V  D  
Sbjct: 347 ATNLLGSINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSARDKDIELVVDIDPS 406

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIP 731
           +      D  R  QI + ++ NA+ F+  GS      +++A  D       V + G  I 
Sbjct: 407 IPEDLSGDAMRFSQIITNLVGNAIKFTESGSVHLKLQLIEATDDKVKLRCEVIDTGIGID 466

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ED  + +F  F        RR  G GLGL I +  +N  GG +   S
Sbjct: 467 EDQQELLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCHS 513


>gi|148553325|ref|YP_001260907.1| integral membrane sensor signal transduction histidine kinase
           [Sphingomonas wittichii RW1]
 gi|148498515|gb|ABQ66769.1| integral membrane sensor signal transduction histidine kinase
           [Sphingomonas wittichii RW1]
          Length = 529

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL++ + A+R+  +   +F   V++EL++PL ++    D L   K  +L   Q Q ++ 
Sbjct: 287 RALSDMSMAIRQRIDATEAFAADVTHELKNPLASLRSAVDSLGIVKEPAL---QKQLIDV 343

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      L  L+ DI + + VDA + +  + ++ L  ++  +  +   +    ++R+   
Sbjct: 344 IRDDVGRLDRLITDIAEASRVDAELARARFESVDLGTMIEGLLTTREERGRNGDVRVAFA 403

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
              +  + V  D  RL ++   ++ NA+ FS     V + A RD  D +  V++ G  +P
Sbjct: 404 RPHRGTAVVFGDGSRLTRVIENLVENAVSFSPAAGLVQVAATRDGDDVVIRVEDEGPGVP 463

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
            D  +++FNRF S+   G+   R  GLGL+I ++ +  H G +  +  D
Sbjct: 464 PDAREAIFNRFHSDRPEGEEFGRHSGLGLAIAKAIVEGHNGSIVATDRD 512


>gi|170726058|ref|YP_001760084.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811405|gb|ACA85989.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1168

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 13/261 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTD-SVRAERALTEKN--EALRKADEIKNSFVQHVSYELRS 582
           +E  +IP+     +     + D S R E  L  KN  E      + K+ F+  +S+E+RS
Sbjct: 458 IELKMIPVQLGDDIFLTAFIHDISKRMEYELQLKNAKEEAESGSKAKSRFLATMSHEIRS 517

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++G  +LL  S L   N +Q  Y +    + T LL+ +NDILD + ++AG M L  
Sbjct: 518 PLNAVLGSVELLLDSML---NKEQRLYAQTAREAGTALLSTINDILDFSKIEAGQMALET 574

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
            +     L+++V Q +A K  E  + +    +  +   V  D QRL Q+   ++ NA+ F
Sbjct: 575 ESFSPAKLVSQVMQILAPKAAEKGVNLATFINRNVPEIVKGDAQRLRQVLHNLVDNAIKF 634

Query: 702 SSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           S  G       I  +         +V + G  +     + +F  F  V + H    +G G
Sbjct: 635 SDSGCISVEMWIPDSHHQEVQLYCTVTDEGIGVSLSAQEKLFQEFSQVHDQHNTSYKGTG 694

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I    I + GG + +SS
Sbjct: 695 LGLAICSELITMMGGKIELSS 715


>gi|116052651|ref|YP_792966.1| putative kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|237651846|gb|AAM15534.2|AF482691_3 putative sensor kinase [Pseudomonas aeruginosa]
 gi|115587872|gb|ABJ13887.1| putative kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1084

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 14/246 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F ++T    AE AL+    A   A + K  F+  +S+E+R+PL    G    L+   
Sbjct: 463 LCVFNDITVHCEAETALSNAKRAADAASQAKTLFLARMSHEIRTPL---YGVLGTLELLD 519

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L +LN +Q  Y+  I +SS  L+ L++D+LD++ ++AG M L  +     DL+ EV  + 
Sbjct: 520 LTTLNERQRAYLRTIQSSSATLMQLISDVLDVSKIEAGQMALTLAAFNPLDLVREVLGNF 579

Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---AR 714
           A      +++     D ++    + D  R+ Q+ + +++NA+ F+  G  V+L+    +R
Sbjct: 580 AASAMAKDLQFYACIDTEVPAQLIGDVTRIRQVLNNLVNNALKFTDIGR-VVLRVKLLSR 638

Query: 715 DNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
           ++G  +  + V + G  I  +  + +F  F  VS AH     G GLGLSI      + GG
Sbjct: 639 NDGRALLQWQVADTGIGIAHEQQERLFEAFYQVSGAHHAG--GTGLGLSICWHLAEMMGG 696

Query: 771 HVSISS 776
           H+ + S
Sbjct: 697 HLRMVS 702


>gi|77745269|gb|ABB02535.1| signal transduction histidine kinase [Lactobacillus reuteri]
          Length = 381

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 138/263 (52%), Gaps = 15/263 (5%)

Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N Q ++T VN + DS  A R++ ++    RK ++ K+  + +VS++LR+PLT+IIG+  L
Sbjct: 121 NQQHVITSVNALVDS--AVRSMDDE----RKIEKSKDELITNVSHDLRTPLTSIIGYLGL 174

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +  S      +Y       +  +  LV+D+ +   V      +N   I LN L+ +
Sbjct: 175 IEDKQYRS-EEDILKYTHTAYEKAKQMKTLVDDLFEYTKVQQHGAPVNIMKIDLNQLIEQ 233

Query: 654 VKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  S   +     I I   VI +  +    AD ++L ++F+ ++SNA  + +  S + + 
Sbjct: 234 LTASFELEAQHRGIEITSSVIPNPLM--IEADPEKLGRVFNNLVSNAFKYGNGASYIRID 291

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHG 769
           A ++N   +  V N+G+ IPE     +F R + + A R +   G GLGL+IV+S ++LH 
Sbjct: 292 ARQENDMVVVKVANDGTPIPEKALDHLFERXYRAEASRSRATGGTGLGLAIVKSIVDLHH 351

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G V + +S+E  T     +P K+
Sbjct: 352 GSVKV-TSNEDETAFIVTLPLKQ 373


>gi|238756595|ref|ZP_04617893.1| Aerobic respiration control sensor protein arcB [Yersinia ruckeri
           ATCC 29473]
 gi|238705193|gb|EEP97612.1| Aerobic respiration control sensor protein arcB [Yersinia ruckeri
           ATCC 29473]
          Length = 779

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 128/249 (51%), Gaps = 16/249 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  +    LN +Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLNDEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      +    ++ 
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLLVQPKGLKF 380

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNG 727
            +   G+L    + D  RL QI   ++ NA+ F+ +G  V+ +  R+N D  IF V+++G
Sbjct: 381 LMEPQGRLPEKIITDGTRLRQILWNLIGNAVKFTQQGQIVV-RIYRENTDRLIFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT-- 782
             IPED    +F  +     R   R   G G+GL++ +      GG + + S+ +GV   
Sbjct: 440 MGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDIMVKST-QGVGSC 498

Query: 783 -TINCRIPS 790
            T++ + P+
Sbjct: 499 FTLSIKAPA 507


>gi|323341543|ref|ZP_08081781.1| sensor histidine kinase [Lactobacillus ruminis ATCC 25644]
 gi|323091027|gb|EFZ33661.1| sensor histidine kinase [Lactobacillus ruminis ATCC 25644]
          Length = 392

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 122/235 (51%), Gaps = 5/235 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ +  K+  + +VS+++R+PLT+IIG+  L++ ++ GS   +  +Y       S  
Sbjct: 143 EEERRIERSKDELITNVSHDIRTPLTSIIGYLGLIEDNQYGS-EEELKKYTHTAFLKSKQ 201

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +LV+D+ +   V    + L+   I L  +L ++  S   + ++  + ++V    +   
Sbjct: 202 MKSLVDDLFEYTKVRQPDLPLSIVKIDLGAMLEQIGASYELEGNKKGMEVEVSVPDEPVF 261

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSV 738
             AD ++L ++F+ ++SNA  +   G  V L   +  + + +  ++N+G  IPED    +
Sbjct: 262 MEADGEKLARVFNNLISNAFKYGRDGKHVYLSVKQLSSKEVVVKIENDGEPIPEDAVPQL 321

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+RF        R   G GLGL+IV+S +  H G++ +  S+  +T+     P++
Sbjct: 322 FDRFYRAESSRSRETGGSGLGLAIVQSIVERHNGYIYV-ESNAALTSFVMHFPTE 375


>gi|171320502|ref|ZP_02909531.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171094265|gb|EDT39343.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 734

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 125/262 (47%), Gaps = 18/262 (6%)

Query: 532 PLPNAQ---TMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
           P P A+    +++ V VT+ V A   L   N         LR A++ K+ F+  + +ELR
Sbjct: 304 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 363

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++              +  I      ++ L++D+LD++ +  G + L 
Sbjct: 364 NPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 419

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L D+++   +  +  + +   R+ V +D        D  RL Q+ + +L+NA  +
Sbjct: 420 KEALRLADIVDRAVEVASPLLEQRRHRLHVDADPDACCH-GDPVRLSQVVANLLTNAAKY 478

Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           +  G  + ++A    +G  I  V +NG+ IP D   S+F  F  +    +    G+G+GL
Sbjct: 479 TMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 538

Query: 759 SIVESFINLHGGHVSISSSDEG 780
           ++V S +NLHGG V   S+  G
Sbjct: 539 ALVRSLVNLHGGTVRADSAGPG 560


>gi|37520287|ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211280|dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 856

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 12/218 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN F+  +S+E+R+P+  +IG  D+L     G L  +Q   +E I AS   LL ++NDIL
Sbjct: 484 KNEFLATMSHEIRTPMNGVIGLADVLLAD--GGLTHRQRDSIETIRASGETLLTIINDIL 541

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D +  ++G ++L      L+ LL      +  +  + ++++     G++  + V D  RL
Sbjct: 542 DFSKAESGCIELETKRFDLHALLAGCVDLLRPEATQKHLQLCCTLHGQVPQAVVGDAARL 601

Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFN 740
            QI   ++ NA+ F++ G+ +V + AAR         +  F+V++ G  IP +    +F 
Sbjct: 602 RQILVNLIGNAVKFTTSGAVSVNVTAARPAAEPPQKWELHFAVRDTGIGIPAERMDRLFK 661

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F        RR  G GLGL+I +    L  G + + S
Sbjct: 662 PFSQVDASTTRRYGGTGLGLAICKRLAELMDGRIWVES 699


>gi|332712494|ref|ZP_08432420.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332348789|gb|EGJ28403.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1356

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 19/231 (8%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--------------KLGSLNSKQSQ 608
            ++ D +K  F+  VS+ELR+PLT+++GF  L++                K+     + S+
Sbjct: 882  KEVDRMKTDFISTVSHELRTPLTSVMGFAKLIQKKLEKTLFPLIPTNDHKIQRTLKQVSE 941

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             V  I +    L  L+ND+LDLA ++AG ++     + + D+L     +      +N++ 
Sbjct: 942  NVNIIISEGERLKALINDVLDLAKLEAGRVEWKMQPLSVVDVLERAIIATTALFEQNDVE 1001

Query: 669  -IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             IK I +G L   + DR RL+Q+   ++SNA  F+ KG  V  K  R   +   S+ ++G
Sbjct: 1002 LIKSIDEG-LPQIIGDRDRLIQVVINLISNAAKFTDKG-FVYCKVRRTGSEITVSIIDSG 1059

Query: 728  SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              I E     +F +F    N    + +G GLGL I +  +  H G + + S
Sbjct: 1060 IGISEAEQTLIFEKFKQAGNTLTEKPQGTGLGLPICKEIVEHHQGQIWVES 1110


>gi|262171204|ref|ZP_06038882.1| sensor histidine kinase [Vibrio mimicus MB-451]
 gi|261892280|gb|EEY38266.1| sensor histidine kinase [Vibrio mimicus MB-451]
          Length = 701

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 15/254 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 300 TFNQKTVYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 352

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS   L  ++  +K   ++
Sbjct: 353 --TAKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSS 410

Query: 661 KMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              E  ++ ++ SD      +  D+ RL QI   +LSNA+ F+ +G   +  +  +  D 
Sbjct: 411 LCFEKGLQFQLHSDIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIDDE 470

Query: 720 IF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            F    V+++G  IP+D    +F  F        RR  G GLGL+IV+    L  G VS+
Sbjct: 471 YFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSV 530

Query: 775 SSSDEGVTTINCRI 788
            S     T    R+
Sbjct: 531 QSEVGQGTCFEVRV 544


>gi|237729582|ref|ZP_04560063.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp.
           30_2]
 gi|226908188|gb|EEH94106.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp.
           30_2]
          Length = 1080

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 8/238 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EKN+A+ +A + K+ F+  +S+ELR+P+++I+GF +LL +S+L     K++  +    A+
Sbjct: 586 EKNKAI-EATKAKSRFLASMSHELRTPVSSIVGFVELLSSSELSPAQRKEA--IALTGAT 642

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL L+  ILD+  +++G  ++      L+ L+     S      +  I +  +S   
Sbjct: 643 AQSLLGLIGKILDVDKIESGKYQVVPQWTDLSQLIELQCHSFDALARQKGITLACVSQLP 702

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIP 731
               V  D+Q L QI + ++ NA+ F+ +GS      ++    ++G    ++ + G  I 
Sbjct: 703 ANERVFVDQQALRQILTNLVGNALKFTEQGSIHVTARLMPEGENHGTLTIAISDTGCGIS 762

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+    +F R+       Q+ G GLGL I +  + L GG + + S     TT    +P
Sbjct: 763 EEEQAGLFQRYAQGRCGRQQTGSGLGLFICKELVTLMGGTLELMSVPLQGTTFTITLP 820


>gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 15/239 (6%)

Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R E A  +  E  R+A      K+ F+ ++S+E+R+P+  +IG   LL +     L ++Q
Sbjct: 144 RLEEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSE---DLTAEQ 200

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV+ I  S   LL L+N ILD + ++AG ++L+Y      +L+ EV   +  +    N
Sbjct: 201 LSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQN 260

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----- 720
           + +       L + V  D  RL Q+   ++ NA+ F+  G   I  +             
Sbjct: 261 LALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDFSC 320

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F+VK++G  IP +    +F RF        R+  G GLGL+I    + L GG V + S
Sbjct: 321 HFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVES 379


>gi|32481651|gb|AAP84165.1| RcsC [Pseudomonas aeruginosa PA14]
          Length = 1084

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 14/246 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F ++T    AE AL+    A   A + K  F+  +S+E+R+PL    G    L+   
Sbjct: 463 LCVFNDITVHCEAETALSNAKRAADAASQAKTLFLARMSHEIRTPL---YGVLGTLELLD 519

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L +LN +Q  Y+  I +SS  L+ L++D+LD++ ++AG M L  +     DL+ EV  + 
Sbjct: 520 LTTLNERQRAYLRTIQSSSATLMQLISDVLDVSKIEAGQMALTLAAFNPLDLVREVLGNF 579

Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---AR 714
           A      +++     D ++    + D  R+ Q+ + +++NA+ F+  G  V+L+    +R
Sbjct: 580 AASAMAKDLQFYACIDTEVPAQLIGDVTRIRQVLNNLVNNALKFTDIGR-VVLRVKLLSR 638

Query: 715 DNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
           ++G  +  + V + G  I  +  + +F  F  VS AH     G GLGLSI      + GG
Sbjct: 639 NDGRALLQWQVADTGIGIAHEQQERLFEAFYQVSGAHHAG--GTGLGLSICWHLAEMMGG 696

Query: 771 HVSISS 776
           H+ + S
Sbjct: 697 HLRMVS 702


>gi|120553043|ref|YP_957394.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120322892|gb|ABM17207.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 1182

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 6/219 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R + + K+ F+ ++S+E+R+PL  IIG+ + L    L     + S   E +  S   LL 
Sbjct: 560 RNSAQAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLNETEKRSS--AETVVRSGRHLLE 617

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           LVNDILD + +DA  + ++   + L +LL+E++   A +  E  +   +I D  L   + 
Sbjct: 618 LVNDILDHSKIDANKLDVDVVPVNLPELLDEIRAFFAPRAREKGLDFSIICDYPLPEKIR 677

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D  R  QI   +  NA+ F+  GS ++I++  R        V + G  +  +    +F+
Sbjct: 678 TDPTRYRQIIINLCGNALKFTENGSISLIIRCDRGAEKLYARVVDTGIGMKPEQLDRLFD 737

Query: 741 RFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F   S A   Q  G GLGLSI      L GG + +SS+
Sbjct: 738 PFAQGSTAISRQYGGTGLGLSISRRLAELLGGDIRVSST 776


>gi|322696596|gb|EFY88386.1| putative histidine kinase HHK2p [Metarhizium acridum CQMa 102]
          Length = 2074

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 16/224 (7%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1405 LKEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1461

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  + +  + ++V
Sbjct: 1462 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLVEADVPAWV 1521

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----------FSVKNNGSSI 730
              D+ R+ Q+   ++ NA+ F+++G            D +          F++ + G   
Sbjct: 1522 KGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRVYTEEDPVVCNENEIMLQFAITDTGRGF 1581

Query: 731  PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             ++  + +F  F  +  +   Q  G GLGL I    + LHGG +
Sbjct: 1582 TKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKM 1625


>gi|313496503|gb|ADR57869.1| KinB [Pseudomonas putida BIRD-1]
          Length = 588

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + Q  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 334 LLTYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 383

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+        ++++  +E I      L  L+ND+L+ +   +G+ KL  +
Sbjct: 384 VTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 443

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              ++DLL   +   A +     I +    D  L    AD  +L ++   +L NA+  ++
Sbjct: 444 PCAIDDLLEHAQLRFAEQAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTA 503

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
            G  + L A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 504 NGGRIRLHARRHAERVIISVEDNGEGISYGQQARIFEPFVQVGRK--KGGAGLGLALCKE 561

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 562 IVQLHGGRMGVFSRPGQGTQFYMALP 587


>gi|270291050|ref|ZP_06197273.1| signal transduction histidine kinase [Pediococcus acidilactici 7_4]
 gi|270280446|gb|EFA26281.1| signal transduction histidine kinase [Pediococcus acidilactici 7_4]
          Length = 480

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E N+ +++ +E + +F+   ++E+R+PLT I G  + L+   +   + ++S  +  
Sbjct: 240 KSLKESNDEIKRQEERRRAFMADAAHEMRTPLTTINGLLEGLEYDAIPEDSKEES--IRL 297

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L+ LVND LD   +    +KL+   + L   +  V + +  K  + N ++ V 
Sbjct: 298 MQRETKRLIRLVNDNLDYERIRTNKIKLDCQMVNLKQAVLRVVEQLGKKAEKENDQLIVE 357

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +  +  + AD  RL+QI   I+ N + F+  G   +      +G  I  + +NG  + E
Sbjct: 358 MNSDVVVY-ADPDRLIQILFNIVQNGIQFTQNGQITVRAQNASDGTNI-QISDNGIGMTE 415

Query: 733 DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D  K+++ R+  ++A R Q +G  GLG++IV   + +HGG + +SS+    TT     P
Sbjct: 416 DQIKNIWERYYKADASRIQTKGESGLGMAIVHELVQIHGGKIEVSSAPGRGTTFKLHFP 474


>gi|167582935|ref|ZP_02375809.1| multi-sensor hybrid histidine kinase [Burkholderia thailandensis
           TXDOH]
          Length = 986

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 13/248 (5%)

Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            AQ +L  VN +T    AE++L E   A  +A+  K+ F+  +S+E+R+PL  +IG  +L
Sbjct: 469 GAQALLATVNDITARKLAEQSLDEARRAADQANRSKSVFLATMSHEIRTPLNALIGNLEL 528

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +K    G L   Q + +E ++++S+ LL+++ND+LDL+ V+AG ++++        LL +
Sbjct: 529 MKR---GPLADAQRRRLEIVASTSSALLHILNDVLDLSKVEAGQLRIDAVPFDCAVLLRD 585

Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V  +         + +   I+       + D  R+ QI + +L NA+ F+  GS  +  A
Sbjct: 586 VTATFQPLATAKGLHLGCDIAPDMAPLRIGDPIRIRQIVANLLGNAIKFTDTGSVTLFAA 645

Query: 713 ARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
               GD +  ++  + G  I      ++F  +        R+  G GLGL++    +N  
Sbjct: 646 ----GDDVIELRVVDTGIGISPQAVATIFELYKQADDSIHRKYGGTGLGLALCRRLVNAM 701

Query: 769 GGHVSISS 776
           GG ++  S
Sbjct: 702 GGEIAARS 709


>gi|297583784|ref|YP_003699564.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297142241|gb|ADH98998.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 472

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 131/254 (51%), Gaps = 13/254 (5%)

Query: 543 VNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKL 599
           V  TD + +   A  +   +L +AD+ K  F+ +VS+ELR+PL+ + G++++L  K  K 
Sbjct: 218 VKTTDEIGQLADAFNQMTYSLDEADKKKQEFLGNVSHELRTPLSYLKGYSEVLLEKHRKG 277

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L+ K   ++E I A    +  L++D+LDLA ++     ++   + L  L+ +V + + 
Sbjct: 278 EALDEK---HIEKIQAEGNRMEKLIHDLLDLARLEGDTYPMDKMPMPLAQLVEDVCERMN 334

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               ++++ + +  D   G  +  D  RL Q+ S ++ NA+ +  +G  + +   + +G 
Sbjct: 335 LIAEKDDVTVNLELD--YGIIIEGDESRLEQVISNLIENAIRYGKQGKQIDVSLEQADGK 392

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  V++ G+ +P +    +  RF  V      Q  G GLGL+IV   +  H G +S  S
Sbjct: 393 AVLRVRDYGAGMPPETLTRLTERFYRVDRTRSKQLGGTGLGLTIVNEIVKKHDGQLSFES 452

Query: 777 SD-EGVTTINCRIP 789
            + EG T I  +IP
Sbjct: 453 VEGEGATAI-VQIP 465


>gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
          Length = 1771

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 133/248 (53%), Gaps = 14/248 (5%)

Query: 538  TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
             +++ V++T+  + ++  L  K EA   A + K  F+ ++S+E+R+P+  IIG + L L+
Sbjct: 1009 AVVSMVDMTELKLLSDELLIAKEEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            T+    L+ KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++ 
Sbjct: 1068 TA----LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLS 1123

Query: 656  QSIATK-MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----IL 710
               + K +H+    +  ++         D  RL Q+   +++NA+ F+ +G  +    ++
Sbjct: 1124 DMFSEKVVHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLV 1183

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            +   D+    FSV+++G  + ++    +F  F        R+  G GLGL+I +  + L 
Sbjct: 1184 EQQNDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELM 1243

Query: 769  GGHVSISS 776
            GG++ + S
Sbjct: 1244 GGNIGVES 1251


>gi|315446672|ref|YP_004079551.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1]
 gi|315264975|gb|ADU01717.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1]
          Length = 1171

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 129/261 (49%), Gaps = 27/261 (10%)

Query: 554 ALTEKNEALR--------KADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +L EKNE L+        KA+E+      K+ F+ ++S+ELR+PL +I+    LL  S  
Sbjct: 451 SLEEKNEELQHLSASLEAKAEELAVSSRYKSEFLANMSHELRTPLNSILILAGLLTESD- 509

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN+KQ ++ E I  S   LLNL++++LDLA V++G + ++   I + +L+  ++++  
Sbjct: 510 EPLNAKQHEFAETIQQSGKDLLNLIDEVLDLAKVESGSLYVDNEPITIAELVTFLERTFR 569

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------VILK 711
               +  I   V + D   G   +D  R+ QI   +++NA+ F+  GS        V   
Sbjct: 570 PIAGDKGIEFLVSVDDSAPGQITSDYTRVKQIAKNLVANAIKFTDTGSVSVKFSGCVDTD 629

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLH 768
            +  +G    +V + G  I E     +F  F   A RG   Q  G GLGL+I        
Sbjct: 630 GSPGDGYLSMAVVDTGIGIDEKDHHLIFESF-QQAGRGSAKQYGGTGLGLAISRELARHL 688

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +++ S+    +T  C +P
Sbjct: 689 GGDIALRSALGEGSTFTCYLP 709


>gi|315054893|ref|XP_003176821.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
 gi|311338667|gb|EFQ97869.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
          Length = 2384

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+ ++S++LR+P+T +IG ++LLK +KL   ++KQ  YVE I   +  LL L+
Sbjct: 1882 AAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DAKQDVYVESIRVCADTLLTLI 1938

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVA 682
            NDILD + ++AG MK++   I L   + EV +++     +  +     ++S       + 
Sbjct: 1939 NDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRDKGLTTVEDLVSIDPNLLVMG 1998

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
            D  RL QIF  +LSN+  F+  GS  +     ++          V + G  I E+    +
Sbjct: 1999 DPVRLHQIFMNLLSNSYKFTPAGSVTVRAIIEEDTPEKIRMTCKVADTGIGISEEQLVRL 2058

Query: 739  FNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
            F  F S A     R   G GLGLSI ++ I ++ GG + + S +   TT+
Sbjct: 2059 FRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTV 2107


>gi|239907263|ref|YP_002954004.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797129|dbj|BAH76118.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 869

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 130/276 (47%), Gaps = 14/276 (5%)

Query: 527 EYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           ++   P P +  ++ F     +V+   R E  L         A + K+ F+ ++S+E+R+
Sbjct: 446 QFRAAPRPGSGRVVLFDGFYFDVSALKRIEGDLRRAMVVAETASQSKSEFLANISHEIRT 505

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++G   LL+T+ LG    +++ YV         L  ++ DILD + ++AG M +  
Sbjct: 506 PLNGVLGMLQLLETAPLG---REEAGYVTTALKCGRGLTRVLGDILDFSLLEAGAMVIKS 562

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           + + + D+  +V  +++ +     I    V++       + D  RL QI   ++ NA+ F
Sbjct: 563 TPVDVRDVTADVLGALSIECRARGIDAGLVVAPDVPARVLTDGARLRQILFNLVGNAIKF 622

Query: 702 SSKGST---VILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           +  GS    + L + R      +F+V + G  +PE+    VF  F        RR  G G
Sbjct: 623 TQAGSVRLDIALASQRGQAAVLLFTVADTGIGMPEEKLDDVFEPFTQADGSLTRRFGGTG 682

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL IV+  + L GG +++ S     T I+  +P K
Sbjct: 683 LGLGIVKRLLTLLGGFLAVESRVGVGTRIDFSLPCK 718


>gi|172065526|ref|YP_001816238.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997768|gb|ACB68685.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 730

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 18/262 (6%)

Query: 532 PLPNAQTM---LTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
           P P A+ +   ++ V VT+ V A   L   N         LR A++ K+ F+  + +ELR
Sbjct: 304 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 363

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++              +  I      ++ L++D+LD++ +  G + L 
Sbjct: 364 NPLTPISLALELIRNRD----GQATPNEIAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 419

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             ++ L D+++   +  +  + +   R+ V +D        D  RL Q+ + +L+NA  +
Sbjct: 420 KESLRLADIVDRAVEVASPLLEQRRHRLHVDADPDARCH-GDPVRLSQVVANLLTNAAKY 478

Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           +  G  + ++A    +G  I  V +NG+ IP D   S+F  F  +    +    G+G+GL
Sbjct: 479 TMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 538

Query: 759 SIVESFINLHGGHVSISSSDEG 780
           ++V S +NLHGG V   S+  G
Sbjct: 539 ALVRSLVNLHGGTVRADSAGPG 560


>gi|319900140|ref|YP_004159868.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319415171|gb|ADV42282.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 370

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 14/242 (5%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNS------FVQHVSYELRSPLTNIIGFTDL 593
            T + +  S R +R    K +   +  E+K +      F+ ++S+E+R+PL  + GF+D+
Sbjct: 117 FTAIYLLASRRVKRLKQRKEKVTLQIQELKRTTANKALFLSNMSHEIRTPLNALAGFSDI 176

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L T  + + + K  Q+ + I  +S +L+ L++D++DL+T+D   MK N        L   
Sbjct: 177 LCTMDMDADSCK--QFNDIIQLNSQLLIKLIDDVVDLSTLDLNNMKFNLEKTDAVALCRG 234

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           V +SI  ++ + +  I   ++ +      D QRL Q+   I+ NA  F  +GS  +    
Sbjct: 235 VVESIQ-QIKQTDAEISFKTELEYLPLNTDSQRLQQVLINIIVNATKFCKQGSITLALEL 293

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           R+   + F+V + G  IP +    VF RF   N H     G GLGLSI E  I   GG++
Sbjct: 294 REEKAY-FTVTDTGCGIPLEQQSKVFGRFEKLNEHAD---GTGLGLSICEIIIKYLGGNI 349

Query: 773 SI 774
            I
Sbjct: 350 GI 351


>gi|288957454|ref|YP_003447795.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909762|dbj|BAI71251.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 545

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNL 623
            D  K++F+  +S+ELR+PL  +IGF+ LL+     +    Q    V+ I  +   LL +
Sbjct: 302 GDRAKSTFIAVMSHELRTPLNAVIGFSQLLELQAGDAAGDGQLLSCVDAIGQAGRRLLAI 361

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++DILD+A V++G + L+   + L  L+      +  +     + + V  DG L     D
Sbjct: 362 IDDILDMARVESGGLSLSEGVVDLFALVERCVADLRFQATRQGVTVSVALDGDLPPLRGD 421

Query: 684 RQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV--F 739
            +RL Q    +LSNA+ FS  G    +  A  ++G    SV++ G  + PED+ +++  F
Sbjct: 422 WRRLGQALGNLLSNAIKFSHPGAEVALAAAIAEDGWVELSVRDQGVGMRPEDIDRALAPF 481

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +  A      GVGLGL +    +  HGG + + S+     T   R+P 
Sbjct: 482 AQ-IDQAATHHHEGVGLGLPLARRLVEAHGGVLRLDSAPGLGCTATLRLPP 531


>gi|17228803|ref|NP_485351.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17130655|dbj|BAB73265.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 585

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 22/285 (7%)

Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRK----ADEIKNSFVQHVSYE 579
           L +   PL NA+  L     +   +  A   L ++ EA R+    A  +K+ F+ +VS+E
Sbjct: 283 LRHECYPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHE 342

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  +IGF  L+       +  K +Q++      S  LLN++NDILD+A ++AG M+
Sbjct: 343 IRTPLNGMIGFLKLILEGMADDVEEK-NQFLSEAHQLSLHLLNIINDILDIAKIEAGKME 401

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           L  + I L +L ++V   +  +    N+  R+++           + QRLLQ+   I+ N
Sbjct: 402 LVCAPIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVGN 461

Query: 698 AMDFSSKG-----STVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
           A+ F+ +G     + V+LK  +       G     + + G  +  D    +F  F  V  
Sbjct: 462 AIKFTHEGGITVTADVVLKKGKLQEQNFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVDG 521

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +   Q  G GLGL+I +  +   GG V   S  EG+ +T+   +P
Sbjct: 522 SRTRQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVP 566


>gi|332308060|ref|YP_004435911.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175389|gb|AEE24643.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 903

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 16/229 (6%)

Query: 560 EALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EA  KA++    K+ F+ ++S+E+R+P+  IIG  D++  S+L    S Q Q++  +  S
Sbjct: 381 EAKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKSEL---TSTQRQHLNKVVYS 437

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S IL++L+NDILD + V+AG + +      LN +   +  +I+ +  E N+ ++ I D  
Sbjct: 438 SQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQEKNLNVRFICDPN 497

Query: 677 LGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIF---SVKNNGSS 729
           +    + D  R+ Q+   + SNA+ F+  GS V +    D   N + +     V++ G  
Sbjct: 498 IPPILIGDPLRISQVLLNLSSNAVKFTRNGS-VTISVTYDIIPNSNKLLLRARVQDTGIG 556

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + ++    VF  F        R   G GLGL+IV+  + L GG V+  S
Sbjct: 557 MSKEQLDKVFESFTQADGSTSRDFGGTGLGLTIVKQLVKLMGGKVTAES 605


>gi|308070736|ref|YP_003872341.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305860015|gb|ADM71803.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 1239

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 16/238 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL +++  + LL  +K G+L  KQ +Y + I  S   LL ++++IL
Sbjct: 542 KSEFLANMSHELRTPLNSLLILSQLLSENKEGNLKPKQVEYAQTIYMSGADLLKMIDEIL 601

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           DL+ VDAG M +N+  + L +L   V+Q+ A    +  +++   I +    + ++D  RL
Sbjct: 602 DLSKVDAGKMDINHEAVHLKELELFVEQNFAPVAAQRELQLHTEIEENLPDAIISDGYRL 661

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPEDMC 735
            QI   +LSNA  F+++GS +    +R NG+               SV++ G  I  D  
Sbjct: 662 KQILRNLLSNAFKFTTEGS-ITFNVSRANGEQLPGLLNPRRSYLALSVRDTGIGIASDKT 720

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +F  F        R+  G GLGLSI      L GG +++ S     +     +P +
Sbjct: 721 DLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGGIITVESEQGQGSCFTLYLPEQ 778


>gi|220905787|ref|YP_002481098.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219862398|gb|ACL42737.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 861

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+  +  +S+EL++PLT I+G   +L+   LGSL  +Q QYV+ I  S   L+ LVND+
Sbjct: 356 LKDELLADISHELKTPLTAILGLASVLQGQGLGSLTPRQFQYVQLIHRSGRQLMALVNDV 415

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIK-----VISDGKLGS 679
           +DL  ++ G ++LN   + L  L     ++ Q +  +  E   + +      I  G   +
Sbjct: 416 VDLIQLETGQVELNSEVVELRPLAQKAYQLAQQLQGQTSEPRPQRQEDFQLTIDPGLETA 475

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            VAD  +L ++   +L NA+  +  GS + L+ +R       +V + G  I       +F
Sbjct: 476 VVADPLQLRRMLVHLLRNALQSTPVGSKLGLRVSRWARWVALTVWDQGKGIALQHQPLIF 535

Query: 740 N--RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEG 780
              R   ++   Q +G GLGL +      LHGG +S IS +  G
Sbjct: 536 QHLRRTESSSTQQLQGNGLGLMLTRKLARLHGGELSFISQAGRG 579


>gi|75909242|ref|YP_323538.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702967|gb|ABA22643.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 585

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 22/285 (7%)

Query: 526 LEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRK----ADEIKNSFVQHVSYE 579
           L +   PL NA+  L     +   +  A   L ++ EA R+    A  +K+ F+ +VS+E
Sbjct: 283 LRHECYPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHE 342

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  +IGF  L+       +  K +Q++      S  LLN++NDILD+A ++AG M+
Sbjct: 343 IRTPLNGMIGFLKLILEGMADDVEEK-NQFLSEAHQLSLHLLNIINDILDIAKIEAGKME 401

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           L  + I L +L ++V   +  +    N+  R+++           + QRLLQ+   I+ N
Sbjct: 402 LVCAPIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVGN 461

Query: 698 AMDFSSKG-----STVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
           A+ F+ +G     + V+LK  +       G     + + G  +  D    +F  F  V  
Sbjct: 462 AIKFTHEGGITVSADVVLKKGKLQEQHFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVDG 521

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +   Q  G GLGL+I +  +   GG V   S  EG+ +T+   +P
Sbjct: 522 SRTRQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVP 566


>gi|299143989|ref|ZP_07037069.1| alkaline phosphatase synthesis sensor protein PhoR [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518474|gb|EFI42213.1| alkaline phosphatase synthesis sensor protein PhoR [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 472

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE- 611
           + L    + + K ++IKN F+  VS+ELR+PLT+I G+  +LK++K       + Q +E 
Sbjct: 228 KTLNTMAQEIVKKEQIKNDFISSVSHELRTPLTSIKGWAVVLKSAK-----EDERQLIED 282

Query: 612 ---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               I   S  L  +V ++LD +   +G ++L      + D  N+V + +  +   N + 
Sbjct: 283 GLNIIENESDRLAKMVEELLDFSRFISGRIQLEKDAFNIADTCNDVAKQMKPRAELNKVD 342

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             + IS+ K    V D  R+ Q+   ++ NA+ F+S+   V LK+  ++  F+  V +NG
Sbjct: 343 FIIDISEDK-AIIVGDENRIRQLLINLIDNAIKFTSENGWVKLKSYVEDEKFVILVSDNG 401

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I +     V  +F    H     G+GL +S  +    LHGG V I S ++  TT+   
Sbjct: 402 MGISKKDLAHVKEKFYKGKHSKSHSGIGLSVS--DEIAKLHGGKVEIFSEEKIGTTVKVT 459

Query: 788 IP 789
           IP
Sbjct: 460 IP 461


>gi|49480178|ref|YP_035256.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331734|gb|AAT62380.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 896

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|145221593|ref|YP_001132271.1| multi-sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK]
 gi|145214079|gb|ABP43483.1| multi-sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK]
          Length = 1161

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 129/261 (49%), Gaps = 27/261 (10%)

Query: 554 ALTEKNEALR--------KADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +L EKNE L+        KA+E+      K+ F+ ++S+ELR+PL +I+    LL  S  
Sbjct: 451 SLEEKNEELQHLSASLEAKAEELAVSSRYKSEFLANMSHELRTPLNSILILAGLLTESD- 509

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN+KQ ++ E I  S   LLNL++++LDLA V++G + ++   I + +L+  ++++  
Sbjct: 510 EPLNAKQHEFAETIQQSGKDLLNLIDEVLDLAKVESGSLYVDNEPITIAELVTFLERTFR 569

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------VILK 711
               +  I   V + D   G   +D  R+ QI   +++NA+ F+  GS        V   
Sbjct: 570 PIAGDKGIEFLVSVDDSAPGQITSDYTRVKQIAKNLVANAIKFTDTGSVSVKFSGCVDTD 629

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLH 768
            +  +G    +V + G  I E     +F  F   A RG   Q  G GLGL+I        
Sbjct: 630 GSPGDGYLSMAVVDTGIGIDEKDHHLIFESF-QQAGRGSAKQYGGTGLGLAISRELARHL 688

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +++ S+    +T  C +P
Sbjct: 689 GGDIALRSALGEGSTFTCYLP 709


>gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS
           [Shewanella putrefaciens 200]
          Length = 1234

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRQKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  +Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 751 SLTPQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D  + +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|298527820|ref|ZP_07015224.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511472|gb|EFI35374.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 375

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 121/241 (50%), Gaps = 2/241 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +KN  L K +E+KN F+   +++LR+PL  I   ++ L      SL+ +  Q++E 
Sbjct: 130 RELQKKNIELTKLNELKNHFLGMAAHDLRNPLGAIRNLSEFLLEEARDSLSDEYIQFLEL 189

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  SS  +L+L++ +LD+A ++AG ++L++ +  L  L+  V         +  I+I++ 
Sbjct: 190 IHTSSNFMLSLLDQLLDIARIEAGKLELDFQSTDLISLIKSVVDINKILAEKKKIQIRLE 249

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               +     D  ++ Q+   +LSNA+ FS +G+ + +           +V + G  IPE
Sbjct: 250 HFETIPYVELDSMKIEQVMHNLLSNAIKFSPEGNLIKVHVFLSGEHVTVAVTDKGPGIPE 309

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + ++  F   + +     +  GLGL+IV   I  H G + + S  +  TT    +P 
Sbjct: 310 EDIQKLYQPFTKTSVKTPEGEKSTGLGLAIVHKIILGHMGKIWVESKVDQGTTFFFSLPV 369

Query: 791 K 791
           K
Sbjct: 370 K 370


>gi|218704409|ref|YP_002411928.1| hybrid sensory histidine kinase TorS [Escherichia coli UMN026]
 gi|218431506|emb|CAR12384.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli UMN026]
          Length = 950

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 479 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 535

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    I +   I+D    + 
Sbjct: 536 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATEIADDVPTAL 595

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 596 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPTKLAEIFQ 654

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 655 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 701


>gi|149187193|ref|ZP_01865491.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148838729|gb|EDL55668.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 934

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 180/390 (46%), Gaps = 46/390 (11%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSL---WKT 469
           W+ +++  +++ E   N   + Q    ++H S+ + +   DG     N AF  L     T
Sbjct: 257 WLQQHVEAKLNKELLDNEKERSQLAMVVEHASDAIVITNRDGLTTWVNSAFEKLSGYQLT 316

Query: 470 EENRLSPGTHIRNIAAT---CSRYYNE-SDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           E     PG  ++ I  +     R  +E S G  + + ++    D R              
Sbjct: 317 ETIGKKPGDLLQGIDTSKEEIKRISDELSQGHTVQSELLNYHKDGRPYW----------- 365

Query: 526 LEYSIIPLPNAQTML-TFVNV----TDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           ++  I P+ N    +  F+ V    +D  + E+ L +  +    ++  K++F+  +S+EL
Sbjct: 366 IDIVITPIRNIHNQIEQFIAVERDSSDRKQLEQNLQQAVQVADASNRAKSTFLATMSHEL 425

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA---SSTILLNLVNDILDLATVDAGI 637
           R+PL  I+G   +L++S        Q+Q+ E +S    S   LL+L+NDILD++ ++ G 
Sbjct: 426 RTPLNGILGMAQILESS------VTQAQHKEQLSVLLESGNHLLSLLNDILDISKIEEGK 479

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKI 694
           ++L      +++L + +  + +   +E  I+ K+   +  GK  SF  D+ R+ Q+   +
Sbjct: 480 LELEDIDFAIDELCSPIISTYSAICNEKGIQFKLNNQLPSGK--SFRGDKSRIRQLIFNL 537

Query: 695 LSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           L NA+ F+ +GS  ++        ++        V + G  IP D   ++F+ F      
Sbjct: 538 LGNAVKFTERGSVELVFSNSQSSMSKSKEQLNIDVIDTGVGIPNDRLATIFDPFTQAEAS 597

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776
             R+  G GLGL+IV+   NL GG   +SS
Sbjct: 598 TTRQFGGTGLGLAIVKKLSNLMGGDAYVSS 627


>gi|116326605|ref|YP_796526.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|3687664|gb|AAC62214.1| LcoS [Lactococcus lactis]
 gi|76574959|gb|ABA47428.1| histidine kinase sensor protein [Lactococcus lactis]
 gi|116108973|gb|ABJ74095.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 464

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 12/239 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK + +++    +N F+  V++ELR+PLT I G+ D+   S   SL  K +QY+  I 
Sbjct: 232 LAEKLDFMKRE---RNEFLSSVAHELRTPLTFIKGYADIANRST-TSLEDK-TQYLRIIR 286

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L  L+ D+++LA ++    K+    +++ +L+NEV   ++    E   RI  +  
Sbjct: 287 EESRHLTQLMEDLMNLAQLEENGFKVEKHQVLIQELINEVVSKVSGVFSEK--RINFLIS 344

Query: 675 GKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           G+ G+F A  D  R+ Q+   +L NA  +S+  S + L    +  +F   + + G  IPE
Sbjct: 345 GE-GNFYANIDFMRIEQVLVNLLMNAYKYSADESDIKLAFIPEKENFKIVISDKGEGIPE 403

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F RF  V  +      GVGLGL+IV+  +  H G + + S     TT    +P
Sbjct: 404 QDLPYIFERFYRVDKSRTRTTGGVGLGLAIVQDIVKKHNGKIIVESIQNQGTTFIIELP 462


>gi|294506227|ref|YP_003570285.1| two-component system sensor protein [Salinibacter ruber M8]
 gi|294342555|emb|CBH23333.1| two-component system sensor protein [Salinibacter ruber M8]
          Length = 1111

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 13/260 (5%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            V D +  E  L    E   + + +K++F+ ++S+E+R+PLT+IIGF +++       L  
Sbjct: 848  VLDRIEYEGELVSAKEEAERLNRMKSAFLANMSHEIRTPLTSIIGFAEVIGDEATSLLEH 907

Query: 605  KQS---------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              S         Q+ + I  S   LL  ++ +L+L+ ++AG M+L+ S + L D + E  
Sbjct: 908  SDSPPDAVTALDQFADLIEESGHRLLETLDTVLNLSRLEAGEMELDCSPLDLADEVAEAT 967

Query: 656  QSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                 +     I ++   ++G L + V D   L      ++SNA+ ++ +G TV ++A R
Sbjct: 968  DLFEPQALTEGIDLQGETAEGPLWARV-DEGGLRIALQNLISNALKYTEEGGTVRVRAGR 1026

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
               D    V++ G  +  D    +F  F   +    R   G GLGL++ +  I   GG +
Sbjct: 1027 RGDDVALEVEDTGVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLAVTKQAIEQMGGTI 1086

Query: 773  SISSSDEGVTTINCRIPSKE 792
            ++ ++    +    R+P+ +
Sbjct: 1087 AVETAKGDGSCFTVRVPAAD 1106


>gi|229177538|ref|ZP_04304916.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
 gi|228605900|gb|EEK63343.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
          Length = 896

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTIKDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-------ILKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS         I   + D    + D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIEISNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 AGSTFTVYIPN 732


>gi|126658537|ref|ZP_01729684.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
 gi|126620124|gb|EAZ90846.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
          Length = 3557

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 9/230 (3%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L +  E   +A++ K++F+ ++S+ELR+PL  I+G+  +L+ S    L+S     ++ I 
Sbjct: 3089 LQQAKELAEEANQAKSAFLANMSHELRTPLNGIMGYAQILQRSP--QLSSDHKSNIQVIY 3146

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
               + LL L+ DILD++ ++AG M+L      LN  L  V +    K  + ++       
Sbjct: 3147 QCGSHLLTLIEDILDISKIEAGRMELYCQEFPLNSFLQGVVEICRIKAEQKSLTFTYERP 3206

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR--DNGDFIFSVKNNGS 728
              L + +  D++RL Q+   +L NA+ F+S GS    V   ++R   NG   F +++ G 
Sbjct: 3207 SSLPTVINTDQKRLRQVLLNLLGNAIKFTSLGSIKFRVSFTSSRTNHNGFLQFEIEDTGV 3266

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
             I  +    +F  F       Q+  G GLGL+I +  + + G  +++ S+
Sbjct: 3267 GISAEQLDRIFLPFEQVGSLSQKAEGTGLGLAISQKLLQMMGTQLTVEST 3316


>gi|153002909|ref|YP_001377234.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152026482|gb|ABS24250.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 10/217 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV-D 634
           V ++LR+PL+ I     LL      SL   +++ +  I ASS  +  ++ D+LD   V D
Sbjct: 226 VGHDLRTPLSAIEAGATLLSRR---SLAPAEARTLARILASSRRMARMIGDLLDFTRVRD 282

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSK 693
           AG + L      L ++   V + +  +   + + + +  DG L G++  D  RL Q    
Sbjct: 283 AGGIPLAPRATDLREVCRPVVEEVRLRHGADAVALSL--DGHLDGNW--DPDRLQQAIGN 338

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR 752
           ++SNA+     G+ V L+A  D+      V+N+G  IP +  +++F  F   +A +    
Sbjct: 339 LVSNALQHQPTGAPVRLRAIGDHDAVCVEVENDGPPIPAEAARAIFEPFRRGDARQAGAD 398

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G+GLGL IV + +  HGG+V ++S  +  TT   R+P
Sbjct: 399 GLGLGLFIVRTIVEAHGGNVEVASGPDRPTTFTVRLP 435


>gi|326423961|ref|NP_761037.2| sensor histidine kinase [Vibrio vulnificus CMCP6]
 gi|319999339|gb|AAO10564.2| Sensor histidine kinase [Vibrio vulnificus CMCP6]
          Length = 805

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 114/215 (53%), Gaps = 11/215 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     LN +Q ++++ +  S   ++ L+N+I
Sbjct: 353 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNEEQRKHLKTLYDSGDHMMTLLNEI 408

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G M+ + +    + ++  V     T   E  ++ KV +    G  + AD+ R
Sbjct: 409 LDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVYTTVPTGRWYCADKAR 468

Query: 687 LLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
           L Q+   +L+NA+ F+++G   +   +  R+  +++   VK+ G  IPE   K +F  F 
Sbjct: 469 LRQVLFNLLNNAVKFTARGLVEVYFEEHTREQANYLSIKVKDTGIGIPESAQKRIFRPFE 528

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  RR  G GLGL+IV+      GG V++SS
Sbjct: 529 QAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSS 563


>gi|283852288|ref|ZP_06369560.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283572370|gb|EFC20358.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 735

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 21/264 (7%)

Query: 536 AQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           A  +L F+ V   +   +    AL +  E   +A   K+ F+ ++S+E+R+P+  I+G  
Sbjct: 454 AGNLLYFIGVIQDISQRKELTAALCQAKETAERASRAKSDFMANMSHEIRTPMNGIMGMI 513

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L   ++L S +   +QY++    S+  LL +VND+LDLA ++AG ++L      L   +
Sbjct: 514 HL---ARLKSPDPALAQYLDLADLSARHLLGIVNDVLDLAKMEAGKVRLLREPFALRREI 570

Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
               + +     E  + + + ++     +   D  RL Q+ + ++ NA+ F+  G   I 
Sbjct: 571 RAAIEPMQAAAGEKGLALALAVAPDVPDAVTGDAGRLRQVLANVVGNAVKFTGTGHVDIR 630

Query: 711 KAARDN--GD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLS 759
               D+  GD        F+V++ G  IP D    +F  F   AH        G GLGL 
Sbjct: 631 VELDDDAAGDEAVVRRLRFTVRDTGIGIPADRLDDIFESF-EQAHTSAHVLYGGAGLGLP 689

Query: 760 IVESFINLHGGHVSISSSD-EGVT 782
           I    +   GG + ++S + EG T
Sbjct: 690 ISRRLVEFMGGTIDVASREGEGST 713


>gi|269839128|ref|YP_003323820.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790858|gb|ACZ42998.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 539

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 114/226 (50%), Gaps = 7/226 (3%)

Query: 552 ERALTEKN----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           ERA   +     EA+++ADE+K S +  VS++LR+PL  I    D L    +     ++ 
Sbjct: 289 ERAALRRRAMEMEAIKRADELKTSLINAVSHDLRTPLATISAAADSLLRQDVEWSEEERR 348

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +V  I+  S  L  LV+++LD++ ++ G ++ + S   L  L+ E    + +    + +
Sbjct: 349 GFVRDIAEESRRLGRLVDNLLDMSRLEGGSLRPHKSWCDLGALVEETIDRLGSLTAHHQL 408

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            ++V  D  L   + D   + Q+ S +L NA+ ++ +G+T+ ++  R   +   ++ + G
Sbjct: 409 HLEVEED--LPPVLLDYVEIGQVVSNLLENAIKYAPQGTTIDIQVRRQGDEVRVAIADRG 466

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
             IP      +F++F          +G+GLGLS+ +  I  HGG +
Sbjct: 467 PGIPPQDLSRIFDKFYRVQGSSPAPQGMGLGLSVAKGLIEAHGGRI 512


>gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1240

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 12/230 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
           L E ++    A + K++F+ H+S+E+R+P+  IIG + L LKTS    L+ +Q  ++E +
Sbjct: 471 LVESHKRAEIASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTS----LDKRQRDFMEKV 526

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +SS +LLN +ND+LD + ++A  + L+     L D+L  V    A K     + + +  
Sbjct: 527 LSSSDVLLNTINDVLDYSKIEANKLTLDEFQFDLRDVLRRVTNISAYKAQSKGVELLLDV 586

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGS 728
           D K+   ++ D  RL QI   + SNA+ F+ KG  VI +K     G      FS+ + G 
Sbjct: 587 DEKVPFHWIGDPTRLGQILINLASNAVKFTEKGEVVIRVKLLEQQGQLSTLRFSIIDTGI 646

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I       +F+ F        R+  G GLGL+I      L  G + + S
Sbjct: 647 GIDHHRLNQLFSPFTQIDSSITRKYGGTGLGLAICRQLTELMNGRIWVDS 696


>gi|113866854|ref|YP_725343.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113525630|emb|CAJ91975.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a PAS sensor domain [Ralstonia eutropha
           H16]
          Length = 569

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 3/232 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +   +   A+  K+ F+  +S+ELR+PL  I+GF  L+ +       S+Q+  ++ I
Sbjct: 177 ALKQAQASAESANHAKSEFLSSMSHELRNPLNAILGFAQLMASEAPPPTASQQAS-IDQI 235

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL L+N++LDLA ++AG   L+   + + D L+E +  +  +  + ++R++  +
Sbjct: 236 LKAGWHLLELINEVLDLARIEAGQASLSPEPVSVIDTLHECQAMLEQQALKRSVRMRFPA 295

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                   ADR RL QI   +LSNA+ ++    +V ++          SV++ G  +  +
Sbjct: 296 VEPPCFVRADRTRLKQILLNLLSNAIKYNRDQGSVDVQVTTTGHRVGVSVRDTGVGLTPE 355

Query: 734 MCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
               +F  F    H  G   G G+GL + +    L GG +S  S+  GV ++
Sbjct: 356 RLAQLFQPFNRLGHEAGPVEGTGIGLVVAKRLAELMGGTISAKST-PGVGSV 406


>gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
 gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens
            CN-32]
          Length = 1771

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 133/248 (53%), Gaps = 14/248 (5%)

Query: 538  TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
             +++ V++T+  + ++  L  K EA   A + K  F+ ++S+E+R+P+  IIG + L L+
Sbjct: 1009 AVVSMVDMTELKLLSDELLIAKEEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            T+    L+ KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++ 
Sbjct: 1068 TA----LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLS 1123

Query: 656  QSIATK-MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----IL 710
               + K +H+    +  ++         D  RL Q+   +++NA+ F+ +G  +    ++
Sbjct: 1124 DMFSEKVVHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLV 1183

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            +   D+    FSV+++G  + ++    +F  F        R+  G GLGL+I +  + L 
Sbjct: 1184 EQQNDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELM 1243

Query: 769  GGHVSISS 776
            GG++ + S
Sbjct: 1244 GGNIGVES 1251


>gi|270294109|ref|ZP_06200311.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275576|gb|EFA21436.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 758

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 8/251 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ +    E+ L E  E   +A E+K SF+ ++S+E+R+PL  I+GF+D+L      S  
Sbjct: 514 NIQELKDHEQELIESRELAEQA-ELKQSFLNNMSHEIRTPLNAIVGFSDMLANEPEFSDE 572

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V+ I+ ++ +LL LV D+L+L+ +++G +   +    +  LL++V Q+ +  + 
Sbjct: 573 ERQ-EFVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQ 631

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIF 721
                +K      +   V D  RL Q+ +  L+NA  F+ +GS + L     +G  +   
Sbjct: 632 PPLQFLKDFPPEDVQVNV-DPMRLTQVLTNFLNNANKFTKEGS-IQLGYCCPSGMSEVHL 689

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G  IP    K +F RF   +   Q  GVGLGLSI    +   GG + + S +   
Sbjct: 690 YVEDTGIGIPHSEQKMIFERFYKRSEFSQ--GVGLGLSICVLIVEKMGGRIELQSEEGRG 747

Query: 782 TTINCRIPSKE 792
           +     +P  E
Sbjct: 748 SRFTVVLPCIE 758


>gi|153870040|ref|ZP_01999522.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073493|gb|EDN70477.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1048

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 125/270 (46%), Gaps = 26/270 (9%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R ++A+  K + L  A + K+ F+ ++S+ELR+PL +I+    +L+ +K  +L  +
Sbjct: 598 TEMERTKKAIENKAQELELASKYKSEFLANMSHELRTPLNSILILAQMLEENKAANLTEQ 657

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +Y + I  + + LL L+N+ILDL+ V+AG + ++   IVL D++  VKQ         
Sbjct: 658 QVEYAQTIFNAGSDLLLLINEILDLSKVEAGKIDVHLENIVLADMVMMVKQKFNHVAETK 717

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----------------- 707
            +   V I +    +   D  RL QI + +LSNA  F+++G                   
Sbjct: 718 GVLFLVTIEEDLPKAMKTDGHRLQQIINNLLSNAFKFTNEGEVKLTIQRPTERIPLLLTG 777

Query: 708 -VILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             + K  +      +     SV + G  IP+D    +F  F        R   G GLGLS
Sbjct: 778 ISLFKEGKQEFLEPDKSIAISVSDTGVGIPKDKQLMIFEAFQQADGTTSRSYGGTGLGLS 837

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I      L  G + + S +   +T    +P
Sbjct: 838 ISRQLARLLCGDIQLQSEEGKGSTFTFYVP 867


>gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 1205

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  + +K + L  + + K+ F+ ++S+ELR+PL +++  +  L  +K  +L+  Q +  
Sbjct: 531 AKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKRKNLSEDQVESA 590

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+ND+LDL+ +++G M +N   +VL     E+  +   +  E  + + 
Sbjct: 591 NIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTFKLQATEKKLDLD 650

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +I D  L   +  D  RL QI   ++SNA+ F+ +G   +    ++    +FSV ++G  
Sbjct: 651 LIFDDDLPEVIRTDSHRLNQILKNLISNALKFTERGKVQVEIKKQNKDKILFSVIDSGIG 710

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+   ++F  F        R+  G GLGLSI      L GG + + S     +T +  
Sbjct: 711 IPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFLKSKVNQGSTFSLS 770

Query: 788 IP 789
           +P
Sbjct: 771 LP 772


>gi|258592021|emb|CBE68326.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 528

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 32/271 (11%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  +   +A   K+ F+ ++S+ELR+PL +IIGF  LL+   + SL  K+ Q + +
Sbjct: 253 RQLLEAKQQAEEASRHKSLFLSNMSHELRTPLNSIIGFASLLQDPIVSSLPEKELQLMRH 312

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS S   LL L+ND+LD++ V+AG + L      L + +     +   +  +    + + 
Sbjct: 313 ISTSGEHLLALINDLLDISKVEAGKLILQPQAFPLGEAIEAAVYTFRPQAAQKQQDLGLS 372

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----------KAARDNGDFI- 720
            D  +    AD  R  QI   +LSNA+ F+  G  + +           KA  ++ D + 
Sbjct: 373 MDHDMPIIKADPIRFKQILYNLLSNAVKFTPVGGRIKVAARIAPGVGHQKAGSNDVDPLH 432

Query: 721 -------------FSVKNNGSSIP-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESF 764
                         +V + G  I  ED+ K   +F +      + Q +G GLGL++ +  
Sbjct: 433 PIPCTQYPGECVEIAVSDTGIGIRCEDLSKLFQLFTQLEPTLTK-QFQGTGLGLALTKQL 491

Query: 765 INLHGGHVSISSSDEG---VTTINCRIPSKE 792
           + LHGG +  +S   G     T+   +PS E
Sbjct: 492 VELHGGTIGAASEGPGRGSTFTVRLPLPSPE 522


>gi|257792818|ref|YP_003183424.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257476715|gb|ACV57035.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 554

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 120/223 (53%), Gaps = 11/223 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R ++E K+ F+ ++S+++R+P+  I+G T + + S  G  + K +  ++ I+ASS  LL 
Sbjct: 171 RSSNEAKSQFLANMSHDIRTPINAIVGMTKIARES--GEASEKIAGCLDAITASSRHLLE 228

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           L+ND+LD++ +++G M+L      ++D++  V+  I  +    +  +++  S  K  +F 
Sbjct: 229 LINDVLDMSRIESGQMELQERRFDIDDVVGGVEAIIRPQAQAKSQELRIDRSKMKHKAFS 288

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMC 735
            D  R+ QI   + SNA+ ++ +G ++ L      K         F++ +NG  +  +  
Sbjct: 289 GDELRISQILLNLASNAVKYTQEGGSIALVVQELAKTRPSYASVAFTITDNGMGMSPEFV 348

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F+ F  +      R  G GLG+SI ++ I+  GG V + S
Sbjct: 349 ERIFDPFERSEEVSIARIQGTGLGMSITKALIDAMGGIVEVDS 391


>gi|254458067|ref|ZP_05071494.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD
            1]
 gi|207085460|gb|EDZ62745.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD
            1]
          Length = 1168

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 156/297 (52%), Gaps = 20/297 (6%)

Query: 499  LFAA-----IITSFDDERKSLQGTLELLSDSVLEYSI-------IPLPNAQTMLTFVNVT 546
            LFAA     I    +D +++ +  L++ S+ + E ++            A++M   +   
Sbjct: 712  LFAATQNMQIKVLLEDSKRAYE-ELQVQSEELQESNVQMEEQQQQLTLQAKSMK--IKND 768

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            + ++A+  L ++ + L KA + K+ F+ ++S+ELR+PL +II  + LL  +K  +L+   
Sbjct: 769  ELLQAKEDLDKRADDLEKASKYKSEFLANMSHELRTPLNSIILLSKLLTQNKKETLSDSD 828

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
                  I  +   LL L+NDILDL+ +++G M+LN S    +++  E++   +    E N
Sbjct: 829  VSKTSVIHKAGNDLLLLINDILDLSKIESGNMELNESEFDTSEIREEIEGLFSEVAKEKN 888

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            +  +V  D    SF+ D+ +LLQI   +LSNA  F+  G  V L   + N D +F V + 
Sbjct: 889  LNFEV-RDSFNRSFIVDKTKLLQIIKNLLSNAFKFTKSGE-VSLSVFKKNRDIVFEVSDT 946

Query: 727  GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            G  IPE     +F  F  V  +   +  G GLGLSI ++FINL GG + + S  EG+
Sbjct: 947  GIGIPEAKLALIFEAFKQVDGSISREYGGTGLGLSISKTFINLMGGRIEVDSK-EGI 1002


>gi|167569847|ref|ZP_02362721.1| sensor histidine kinase/response regulator [Burkholderia
           oklahomensis C6786]
          Length = 1082

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + DLL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIADLLDRLALSHAPLATQQGLKFYIVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWHAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVALP 713


>gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 915

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 135/277 (48%), Gaps = 16/277 (5%)

Query: 525 VLEYSIIPLPNAQTMLTF-VNVTDSVRAERALT----EKNEALRKADEIKNSFVQHVSYE 579
           + + SI+P+  A   ++  + V  ++ AER +T       EA  + +  + +F+  +S+E
Sbjct: 369 IFDTSIMPIERASGQISGGLIVGRNITAERQITADLLRAKEAAERTERAQAAFLSAISHE 428

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  +I   +LL T    +L   Q   +E I      LL LVN++LDL+ ++AG ++
Sbjct: 429 MRTPLNAVIASAELLLTD---TLTPSQRSLIETIRIGGEALLALVNNVLDLSKIEAGRVE 485

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNA 698
           +      +  +++ V      +  +  + I+ + D  L +  V+D  RL Q+   ++SNA
Sbjct: 486 IAAEPTDVRAIVHAVLNLFKREADQKGLLIEAVIDPHLPALIVSDPARLRQMLMNLVSNA 545

Query: 699 MDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752
           + F+ +G  +I    +  A D+     +V++ G+ I       +F  F  V N    Q  
Sbjct: 546 IRFTDRGGVLITASVIGMATDHPQVEIAVRDTGTGISAQQRSHLFQPFNHVDNDQTRQ-S 604

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+I     +L GG ++++      +T    +P
Sbjct: 605 GAGLGLAISAQLAHLMGGELTVAGQPGQGSTFTVTLP 641


>gi|47565594|ref|ZP_00236635.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47557584|gb|EAL15911.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 366

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 129/245 (52%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K  E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 120 RMAKSLKESIENEKKTQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 178

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+   + +  L+ ++      ++ + N+  
Sbjct: 179 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 238

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + SD  L   V D   ++++F  ++ N++ +   G  + ++ +    +    +KN G  
Sbjct: 239 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 297

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S   LH G +++ S+D+  T  
Sbjct: 298 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGMGLAISKSIAQLHQGDITVRSNDKE-TVF 353

Query: 785 NCRIP 789
             ++P
Sbjct: 354 TVKLP 358


>gi|242280556|ref|YP_002992685.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123450|gb|ACS81146.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 1038

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 135/276 (48%), Gaps = 14/276 (5%)

Query: 525 VLEYSIIPLPN---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +L  +I+P       + ++   ++++  R E+ L    E  ++A+E K  F+ ++++E R
Sbjct: 618 ILNLTIVPGCEDSWERVLVAVEDISELKRIEKELRSSREEAQEANEAKGRFLANMTHEFR 677

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  + G   LL+ S+L    S+Q + +  I +S   LL +VNDILD + +D+  M+LN
Sbjct: 678 TPMNAVKGMVQLLQRSEL---TSEQQENLRLIKSSVDSLLVIVNDILDYSKLDSVHMELN 734

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              I     L E+   +        +++ + ++        D  RL Q+   +L N + F
Sbjct: 735 EENIDFPAFLREMGDVVDIGAMNKPLQVILEAENVPDCVRVDSLRLRQVLVNLLGNGVKF 794

Query: 702 SSKGS-TVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
           + KG+ T+  +     G+      +F V + G  +P+D  +S+F  FV       R+  G
Sbjct: 795 TDKGNVTLRCRPEGPEGEGGKLRLLFEVSDTGIGLPKDGAESLFESFVQADPSITRKYGG 854

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I    +   GG +S  ++++G    +  +P
Sbjct: 855 TGLGLAICYKLVKHLGGELSARNNEQGGALFSFVLP 890


>gi|39937477|ref|NP_949753.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|192293263|ref|YP_001993868.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|39651336|emb|CAE29858.1| sensor histidine kinase with PAS/PAC and response regulator
           receiver domains [Rhodopseudomonas palustris CGA009]
 gi|192287012|gb|ACF03393.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 873

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 19/247 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  RAE+A  E        +  K+SF+  +S+E+R+P+  ++G  + L  +KL   +
Sbjct: 355 DVTERWRAEQAEAE--------NRAKSSFLAMMSHEIRTPMNGVLGLANSLLETKL---D 403

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q Q V  I  S   LL ++NDILDL+ ++AG ++   +      L+  V+  I  ++ 
Sbjct: 404 PEQQQAVTTIRDSGDDLLRILNDILDLSKLEAGRLEFEQADFSPTTLVESVRAIIEPEVR 463

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI- 720
              I +KV  D +L  S   D  R+ Q+   + +NA+ F+ +GS  ++L   + N     
Sbjct: 464 GKGIELKVDIDPRLPPSLNGDAARIRQVLLNLAANAVKFTEQGSIAIVLTCVKRNDSHAT 523

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             + V + G  I  D   S+F  F        RR  G GLGL+I    +   GG ++++S
Sbjct: 524 VEWQVTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTS 583

Query: 777 SD-EGVT 782
            + EG T
Sbjct: 584 REGEGST 590


>gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1202

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+P+ ++IG   LL  +   +L+ +Q  YV+ I +S   LL+++NDILD +
Sbjct: 826  FLAYMSHEIRTPMNSVIGLAGLLLET---NLSPEQRDYVQTIHSSGDALLSIINDILDFS 882

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
             ++ G MKL      L   ++     +A K  E  + +    D  +  + V D  RL QI
Sbjct: 883  KINEGKMKLELEPFSLRKCIDRSINMVAAKAAEKGLEMGFYLDDLVPQTVVGDSVRLQQI 942

Query: 691  FSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
               +L NA+ F+ +G   + +K   + G   FSV + G  I +   K +F+ F       
Sbjct: 943  LVNLLGNAVKFTERGMVSLEVKMGDEPGMLHFSVTDTGIGISKSDMKKLFHSFSQVDAST 1002

Query: 750  QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             R+  G GLGL+I    +   GG + + S     +T + +I  +E
Sbjct: 1003 SRKYGGTGLGLAISRMLVEQMGGRIWVESEMGSGSTFHFQIKVEE 1047


>gi|325921205|ref|ZP_08183069.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548312|gb|EGD19302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 894

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 22/231 (9%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ +   +A   K++F+ ++ +E+R+P+T ++G ++LL  + L   N+KQ  +V+ I  +
Sbjct: 505 QRQQLAEQASVAKSNFLANLGHEVRTPMTGVLGMSELLLATPL---NAKQRSHVDAIRKA 561

Query: 617 STILLNLVNDILDLATVDAGIMKLNYS-------TIVLNDLLNEVKQSIATKMH-ENNIR 668
              LL LVND LDLA ++AG ++L          T  L D ++ + ++   + H  N + 
Sbjct: 562 GAHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELADFMHPISEARGLRFHYRNQLP 621

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +++        + D  R+ QI   +L NA+ FS +G  V L A++      F V+++G 
Sbjct: 622 AQLV-------VLGDATRVRQILINLLGNAIKFSERGE-VSLTASQHGEVLRFKVRDSGP 673

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
            I  +  K +F RF     AH   R  G GLGL+I +       G + + S
Sbjct: 674 GIGPEQQKRLFQRFEQADGAHTSARYGGSGLGLAICQELTVAMKGTIRVRS 724


>gi|283852157|ref|ZP_06369430.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572383|gb|EFC20370.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 598

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 121/238 (50%), Gaps = 17/238 (7%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLL--------------KTSKLGSLNSKQSQYVEYI 613
           +K++F+  VS+EL++PLT+++GF  ++              K + + +  ++  + +  +
Sbjct: 357 VKSNFLSLVSHELKTPLTSMVGFAQVMIRRLERGVLADYVAKNADVAAECARFHENLAIM 416

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 L  L+ ++L+LA +++G   L    + ++DL++   +     M +  +      
Sbjct: 417 LEEGRRLAKLIENVLELAALESGAAALTMGPVAVSDLVDRAVEPFLEPMAQKGLLFLRDI 476

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +  L     DR+R++ +   + SNA+ F+  G  ++ +A  ++G  + SV++ G  IP +
Sbjct: 477 ESDLPPLRCDRERIVYVLRHLFSNAVKFTEAGQ-IVCRARSEDGMAVISVEDTGRGIPRE 535

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           M ++VF +F  + +   G+  G+G+GL+   + +  HGG + I+      + ++  +P
Sbjct: 536 MREAVFEKFLQLGDNLTGKMPGLGIGLAASRAVVEFHGGRIRIAGEPGRGSEVSFTVP 593


>gi|297569292|ref|YP_003690636.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925207|gb|ADH86017.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 550

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 150/324 (46%), Gaps = 23/324 (7%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T ++ +A   +RY       D   A++    DE ++L  +   ++  + +Y      N +
Sbjct: 240 TPMQTLATAMTRYSRSGHADD---AVVLQTGDELEALSHSFASMAGKLSDYH----HNLE 292

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +  +   D  ++ R L E N  L   +  K+ F+   S+ELR+PLT++ G  + L T+
Sbjct: 293 DKIQ-IATRDLEQSNRQLLEANRLLAATNLRKSDFIARASHELRTPLTSVKGGMEYL-TA 350

Query: 598 KLGSLNSKQSQ---------YVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVL 647
           KL SL+    Q         +++ I  ++  L+ +VN +LD+  ++ G +  LN     L
Sbjct: 351 KLASLDRDTGQACNRDELLDFLKLIRNNTDRLIRMVNTMLDIEHIEMGTVSSLNIRDFDL 410

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++ E ++ +A      +I +  I   +     AD  R+ Q+ + +L+NA+ FS   S 
Sbjct: 411 ALIIWESREELALTAAGKDIEL-TIQGPQTMMVRADEDRIRQVLTNLLANAVKFSPTNSA 469

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           V L   +D    +  V + G+ I     + +F +F      G + G GLGL+I  S I  
Sbjct: 470 VQLCFRQDQEVTLVEVLDRGAGIEPGQEEKIFEKFY---RLGDKEGSGLGLAICRSIIEA 526

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           HGGH+   +   G      ++PS+
Sbjct: 527 HGGHIGAENRPGGGARFYFQLPSR 550


>gi|229116058|ref|ZP_04245451.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228667393|gb|EEL22842.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
          Length = 312

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 3/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +  R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I 
Sbjct: 74  LKESIDEERQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIY 132

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              T L  L+ND+ +   V    + L  + I + +LL ++      ++ E NI+ +    
Sbjct: 133 GKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANIQCRPSFP 192

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +    +AD  +L+++F  ++ NA+ + ++G  + L A   N      + N G  IP   
Sbjct: 193 SQKLMVLADGDKLVRVFENLIINAIAYGNEGGYIDLTAYESNNMITIDITNYGQPIPSTD 252

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F RF  V  +      G GLGL+I +S + LH G + + S D+  T     +P K
Sbjct: 253 LPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 311


>gi|167562661|ref|ZP_02355577.1| sensor histidine kinase/response regulator [Burkholderia
           oklahomensis EO147]
          Length = 1082

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + DLL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIADLLDRLALSHAPLATQQGLKFYIVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWHAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVALP 713


>gi|162453383|ref|YP_001615750.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
 gi|161163965|emb|CAN95270.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
          Length = 1676

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A +AL EK   L    + K+ F+ ++S+ELR+PL +++  +D L  +   +L ++Q +Y
Sbjct: 974  QARQALEEKARQLALTSKYKSEFMANMSHELRTPLNSLLILSDQLSRNNDQNLTARQVEY 1033

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I AS T LL L+NDILDL  +++G + ++   I   DL + V+++         +  
Sbjct: 1034 AKTIHASGTDLLGLINDILDLTKIESGTVVVDVGEISFTDLSDYVRRTFRHVAEAKKLDF 1093

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR----------DNG 717
            ++     L  S   D +RL Q+   +LSNA  F+ +G  V+ +  AR             
Sbjct: 1094 ELSFSSTLPTSMFTDAKRLQQVIKNLLSNAFKFTERGKVVLEVTVARGGWSRENEVLSRA 1153

Query: 718  DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            D +   SV + G  I  D  + VF  F        R+  G GLGL+I      + GG ++
Sbjct: 1154 DVVIALSVHDTGIGIAPDKQQIVFEAFQQADGSTSRKYGGTGLGLAISREIAGMLGGDLT 1213

Query: 774  ISSSDEGVTTINCRIP 789
            + S+    +T    +P
Sbjct: 1214 LISAPGRGSTFTLYLP 1229


>gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
 gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
          Length = 578

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 26/223 (11%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  ++G  +LL  S+L   + KQ  YV+ +  S   LL ++NDIL
Sbjct: 197 KSQFLANMSHEIRTPMNGVLGMAELLLHSEL---DEKQKSYVKILHQSGESLLGIINDIL 253

Query: 629 DLATVDAGIMKLNYSTIVLN-------DLLNEV--KQSIATKMHENNIRIKVISDGKLGS 679
           +++ ++AG +++      L+       +L  EV  ++ +A ++         I +     
Sbjct: 254 NISKIEAGRLEIERIPFDLHETARGAVELYREVGRRKGVAVELQ--------IEEDVPRC 305

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMC 735
            V D  RL Q+   +++N + F+ KGS    V L     NG ++ F VK+ G  IP D  
Sbjct: 306 VVGDPSRLRQVLINVVNNGLKFTDKGSVQVRVTLVEQYQNGQYVAFEVKDTGIGIPADCI 365

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             +F  F        R+  G GLGL+I +  + L GG + + S
Sbjct: 366 GDIFGLFAQVDGSTTRKYGGTGLGLAIAKQLVELMGGAIGVES 408


>gi|126700251|ref|YP_001089148.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|254976230|ref|ZP_05272702.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255093617|ref|ZP_05323095.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255101805|ref|ZP_05330782.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255315365|ref|ZP_05356948.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255518030|ref|ZP_05385706.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255651146|ref|ZP_05398048.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260684212|ref|YP_003215497.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260687871|ref|YP_003219005.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|115251688|emb|CAJ69523.1| Two-component sensor histidine kinase [Clostridium difficile]
 gi|260210375|emb|CBA64751.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260213888|emb|CBE05916.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 429

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 36/343 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +S G+     +G I L N   + + K+E N+L  G +I  +         E +       
Sbjct: 95  ISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK-------EEEILKQILQ 147

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEK 558
            I S D+E  ++        D V +  + P  L N   ++  + VN+ D       +T+K
Sbjct: 148 FIGSKDNETANITTK----DDIVYKIKVDPVYLQNTNNVIIGSIVNIED-------ITKK 196

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++ ++++E I + S 
Sbjct: 197 ----VKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR-NRFLEIIESESD 251

Query: 619 ILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            L  L++DIL L+ V   D  +M+     +V+ D+  EV +       E NI +    D 
Sbjct: 252 RLKRLIDDILLLSFVENKDTLLME----NVVVYDVFKEVYEITQHSASEKNIEVLYKCDD 307

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +NG  IP++  
Sbjct: 308 KSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGIPKEDV 367

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +F RF  V  A      G GLGL+I +  +    G + + S
Sbjct: 368 ERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKS 410


>gi|332143228|ref|YP_004428966.1| Signal transduction histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553250|gb|AEA99968.1| Signal transduction histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 641

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 15/225 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A+  K  F+  +S+E+R+PL  I G   LL  +    L  KQ QY   + +S++IL  
Sbjct: 253 QQANRAKTDFLAVMSHEIRTPLNGIQGLATLLLDT---PLTEKQHQYASDLKSSASILAT 309

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           ++ND+LDL+ +++G+ +++ +   L+++L ++   + T    NN R+ V +   + S   
Sbjct: 310 VINDVLDLSKIESGMSEIDVTEFALDNMLRDLITLLGTNASANNTRL-VYTSKNMDSVAV 368

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------NGDFIFSVKNNGSSIPED 733
            +D  +L QI   ++SNA+ F+ KG+  I    +            + +VK+ G  I  D
Sbjct: 369 TSDITKLRQIIINLVSNAIKFTHKGTVSISAKLKKPSTEEVCENRLVVAVKDTGIGIEPD 428

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             + +F++F  +     R   G GLGL+I      L GG + + S
Sbjct: 429 RLEHIFDKFTQSDSSITREYGGTGLGLAIARQLAQLLGGDIKVVS 473


>gi|150392115|ref|YP_001322164.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951977|gb|ABR50505.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 784

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 130/256 (50%), Gaps = 16/256 (6%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIG 589
            +T ++F +   ++   R +TE+ EA +      K D++K  F  ++++ELR+PL  I G
Sbjct: 483 VETKVSFNDQESTMMIIRDITEQKEAKKLLEETIKYDKLKTEFFVNIAHELRTPLNVIFG 542

Query: 590 FTDLLKTS-KLGSLNSKQS-----QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
              LL+   K   +  K++     + ++ +  +   LL LVN+I+D+  +++G  +L   
Sbjct: 543 ALQLLELDFKQDEIEKKEALLGVDKRIKSMKQNCYRLLRLVNNIIDITKIESGYYQLELQ 602

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + + +++  +  S++  M    I ++  +  +      D  ++ +I   +L+NA+ F+ 
Sbjct: 603 NVDIVNVVENITMSVSEYMEIRGINLQFDTQVESKLIACDPDKMERIMLNLLANAIKFTE 662

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSI 760
            G  + +       + + S+++ G  IPED    +F RF S   R   R   G G+GLS+
Sbjct: 663 SGGQIKVNMYEKEENMMISIQDTGIGIPEDRINVIFERF-SQVDRSLTRSHEGSGIGLSL 721

Query: 761 VESFINLHGGHVSISS 776
           V+S + L GG +++ S
Sbjct: 722 VKSLVELQGGQITVKS 737


>gi|298246997|ref|ZP_06970802.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297549656|gb|EFH83522.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 390

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 21/272 (7%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEK--------NEALRKADEIKNSFVQHVSYELRSPL 584
           LP A   L    +T   ++   L +K        N+ L +A+++K+ F+   ++ELR+PL
Sbjct: 115 LPFALAGLLIAVITGQHQSAHRLVQKRADELSIMNQELERANQLKDYFMIRAAHELRTPL 174

Query: 585 TNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           T I+G T L   +  K GS  +   +  E + A +  L   V D+L+L+ + +G + L  
Sbjct: 175 TTILGETQLALRRLHKAGSTTTDCQRSFEKVEARAMYLRAFVEDLLELSRLRSGEIPLRP 234

Query: 643 STIVLNDLLNEV---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           ++     L  EV   +Q+++ +  E        S+  L    AD +RL Q    ++ NA+
Sbjct: 235 TSCDFEKLCREVVEDQQALSGRQIEYQ-----FSEQPL-ILQADCERLSQAIINLVENAV 288

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
            +S + + + ++ + D    +F V N G  +  +  + +F  F   S A    R G G+G
Sbjct: 289 HYSLEHTVIRVRVSADQTSVLFQVHNEGPELSHEQQERIFEPFYRTSFAENAFRTGRGIG 348

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L++ +  +  H GH+ + S +   TT   RIP
Sbjct: 349 LTMSQEIVEKHHGHIWVESVEGKGTTFFVRIP 380


>gi|293404288|ref|ZP_06648282.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412]
 gi|300896367|ref|ZP_07114909.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1]
 gi|331662402|ref|ZP_08363325.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143]
 gi|291428874|gb|EFF01899.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412]
 gi|300359778|gb|EFJ75648.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1]
 gi|331060824|gb|EGI32788.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143]
          Length = 900

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    I +   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPTKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|317154644|ref|YP_004122692.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944895|gb|ADU63946.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 664

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 128/244 (52%), Gaps = 24/244 (9%)

Query: 555 LTEKNEALRKA-DEIKNS-------------FVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           L  KN++L  A DE++N+             F+  +S+E+R+P+  ++G  ++L  ++L 
Sbjct: 255 LEHKNDSLNTALDELRNATLVAERANLAKSRFLSSMSHEIRTPMNAVLGMAEILGETEL- 313

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                Q++YV+ I A+   LL +++DI+DL+ ++ G ++L+ +   L++ +++    I  
Sbjct: 314 --TPDQTRYVQIIRAAGESLLAILSDIIDLSRIETGSLRLDETRFTLSETVDKAFAIIEP 371

Query: 661 KMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN 716
           +  + ++  +  ++         D + L Q+   +L NA+ F+  G+   +V     RD 
Sbjct: 372 RAGQKSLELVCTLAPDVPNRLTGDPKLLTQVLVHLLGNAVKFTEGGTVRLSVSRAPGRDG 431

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           G  + FSV + G  IP D   ++F+ F   +N+   +  G GLGL+I +  +++ GG + 
Sbjct: 432 GVAVQFSVSDTGPGIPADRLGAIFDSFTQANNSTTREHGGAGLGLTISKRIVHMMGGRIW 491

Query: 774 ISSS 777
             SS
Sbjct: 492 AESS 495


>gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 940

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 14/232 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+SF+  +S+E+R+P+  IIG  +LL  ++L    S+Q  Y + +  S+ +LL ++NDIL
Sbjct: 547 KSSFLAMMSHEIRTPMNGIIGMNELLLGTRL---TSEQLDYAQAVQESAELLLTVINDIL 603

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D + V+AG M+L         +++ V + +  K  E  + I   I+D     F  D  RL
Sbjct: 604 DYSKVEAGKMELESIDFDPVPVVDGVARLLQGKAREKGLTISTFIADEARFLFQGDPGRL 663

Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFV 743
            Q+   ++SNA+ F+ +G+  I +    D G  +   F V + G  I  ++   +F  F 
Sbjct: 664 RQVLLNLVSNAVKFTERGTIDIRVFPVSDTGSQVTIRFEVIDTGIGIAPEIRDCLFQPFS 723

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT---TINCRIP 789
                  R+  G GLGL+I  + + L GG + + S   EG T   T+  R P
Sbjct: 724 QGNTSMTRKYGGTGLGLAISRNLVELMGGKIGVQSKPGEGSTFWFTLPVRKP 775


>gi|163742074|ref|ZP_02149463.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161384795|gb|EDQ09175.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 764

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 125/244 (51%), Gaps = 11/244 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T +V+ E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +LL  +   +L
Sbjct: 190 LDITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDT---NL 246

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  Y   I  S   LL ++ND+LD + ++A  ++L+     L   ++EV   +    
Sbjct: 247 SDEQQLYANTIKNSGEALLVIINDVLDYSKIEAQKLELHPEPFDLERSVHEVLMLLQPTA 306

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            +  + + +  D  L  SFV D  R+ Q+ + ++ NA+ F+S+G   +      N D   
Sbjct: 307 RDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTSEGHVALQITGISNADDKI 366

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                ++++ G  IPE+  + +F  F  V +    Q  G GLGL+I +  I L GG + +
Sbjct: 367 CSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAISKRLIELMGGEIWV 426

Query: 775 SSSD 778
            S +
Sbjct: 427 ESQE 430


>gi|160889853|ref|ZP_02070856.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
 gi|156860845|gb|EDO54276.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
          Length = 759

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 8/251 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ +    E+ L E  E   +A E+K SF+ ++S+E+R+PL  I+GF+D+L      S  
Sbjct: 515 NIQELKDHEQELIESRELAEQA-ELKQSFLNNMSHEIRTPLNAIVGFSDMLANEPEFSDE 573

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V+ I+ ++ +LL LV D+L+L+ +++G +   +    +  LL++V Q+ +  + 
Sbjct: 574 ERQ-EFVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQ 632

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIF 721
                +K      +   V D  RL Q+ +  L+NA  F+ +GS + L     +G  +   
Sbjct: 633 PPLQFLKDFPPEDVQVNV-DPMRLTQVLTNFLNNANKFTKEGS-IQLGYCCPSGMSEVHL 690

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G  IP    K +F RF   +   Q  GVGLGLSI    +   GG + + S +   
Sbjct: 691 YVEDTGIGIPHSEQKMIFERFYKRSEFSQ--GVGLGLSICVLIVEKMGGRIELRSEEGRG 748

Query: 782 TTINCRIPSKE 792
           +     +P  E
Sbjct: 749 SRFTVVLPCIE 759


>gi|159040033|ref|YP_001539286.1| GAF sensor hybrid histidine kinase [Salinispora arenicola CNS-205]
 gi|157918868|gb|ABW00296.1| GAF sensor hybrid histidine kinase [Salinispora arenicola CNS-205]
          Length = 1179

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 126/255 (49%), Gaps = 16/255 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A   L E  + L +A   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 750  ARLGLEETAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLVENPEQNLSPKQIEFA 809

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I ++ T LL+L++DILDL+ ++AG M +  + I   ++ + V+Q+   +  E  +  +
Sbjct: 810  RTIHSAGTDLLSLIDDILDLSKIEAGRMDVEPTGIRFTEIRSYVEQAFVPQAQEKGLDFE 869

Query: 671  V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----------STVILKAARDNGD 718
            V +S       V D QRL QI   ++SNA+ F+  G           STV    A  N  
Sbjct: 870  VRVSPDLPEKIVTDAQRLQQILRNLISNAVKFTDAGVVRLAIAPAPESTVFDVPALTNAR 929

Query: 719  FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
             +  F+V + G  I +D    +F  F        RR  G GLGLSI      L GG + +
Sbjct: 930  QVIAFTVADTGIGISDDKLSIIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGAIGV 989

Query: 775  SSSDEGVTTINCRIP 789
            SS+    +T    +P
Sbjct: 990  SSAPGQGSTFTLFVP 1004


>gi|329956927|ref|ZP_08297495.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328523684|gb|EGF50776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 868

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 12/235 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  A   K  F  +VS++ R+PLT I    D L   +  S++ +  Q +E +  +  ILL
Sbjct: 356 LEAATHAKLVFFTNVSHDFRTPLTLIADPVDQLLADR--SISEQSHQLLELMKKNVHILL 413

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRIKV-ISDGKL 677
            LVN ILD   V+ G M+L+       DLLN  +    S    + + +I      + G  
Sbjct: 414 RLVNQILDFRKVENGRMELHLEPF---DLLNSFEGWNDSFRVALLKKHIAFSFEPAPGVD 470

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              +AD +++ +I+  +LSNA+ ++ +   ++++   ++  F  SV N+GS I     ++
Sbjct: 471 YRMLADAEKMERIYFNLLSNAVKYTQENGKIVVRLEAEDRHFRLSVFNSGSYISTTDVEA 530

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F RF      G + G G+GL++V +F+ +HGG++   S+++G TT    +P ++
Sbjct: 531 IFERFYQVG--GHQAGTGIGLALVRAFVEMHGGNIMAHSNEKG-TTFTVTLPKRD 582


>gi|313902446|ref|ZP_07835848.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467244|gb|EFR62756.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 521

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR++  ++ + +  +S+ELR+P+T I G  + L+   + +  + + Q  + I A +  L 
Sbjct: 245 LRRSQALRRAMLATISHELRTPVTVIRGLGEALRDGLVEAGPAARRQAGQ-IVAEAERLG 303

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            L++D+  LA ++ G + L          L E   ++   + E   R +V +  G  G++
Sbjct: 304 RLIDDLFQLAQIETGQLDLRLERFAAGPWLEERATALEALVRERGARWQVRVDPGLAGAW 363

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738
           + AD  RL Q+   ++ NA   +     V L A    G     V +NG  I P D+ + +
Sbjct: 364 LEADPHRLAQVLGNLVDNAARHAGPEGQVRLDAVLVPGGIRIEVADNGPGIDPADLPR-I 422

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F  F       + RG GLGLSIV + +  HGG V + S+
Sbjct: 423 FEPFYRGREAARSRGAGLGLSIVRALVEAHGGRVGVESA 461


>gi|218677263|ref|YP_002396082.1| putative two-component sensor [Vibrio splendidus LGP32]
 gi|218325531|emb|CAV27738.1| putative two-component sensor [Vibrio splendidus LGP32]
          Length = 808

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 117/221 (52%), Gaps = 12/221 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+E+R+P+  IIG + LL       +  +Q +YV+ ++ SS  LL+L+
Sbjct: 239 ANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM---DMPKEQKEYVDMLNTSSLTLLDLI 295

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + ++AG ++L    + +  +  +V+ +   K  +  ++ ++  D K+ + V  D
Sbjct: 296 NDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIPTMVIGD 355

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             +L Q+ + ++ NA+ F+  G  ++      +          F V ++G  I ED  +S
Sbjct: 356 GTQLRQVLNNLVGNAIKFTEHGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQS 415

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           VF++F        R   G GLGL+I +  + L G  + ++S
Sbjct: 416 VFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTS 456


>gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
 gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
          Length = 827

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 130/262 (49%), Gaps = 15/262 (5%)

Query: 526 LEYSIIPLPNAQTMLT-FV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           ++  IIPL N Q ++  F+    ++T+  R E  L  +    R+A+E K++F+  +S+E+
Sbjct: 413 IDIDIIPLRNEQGVVERFIAIERDITEVKRLESDLETEALKARRANEAKSAFLATMSHEI 472

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  ++G   +L        + +Q + +     S   LL+++NDILDLA V++  + L
Sbjct: 473 RTPLNGLLGMLQILNDD---IRDLEQRKVLRLALNSGEHLLSILNDILDLAKVESDALAL 529

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSN 697
           +     + D++  V+ +      E  I   V    SD     +  D  R+ Q+   ++ N
Sbjct: 530 DIHPFKMADIITPVEVTYQGLCSEKGIVFNVDNHCSDD--CYYCGDSVRIRQVLLNLVGN 587

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A+ F+  G   +   A ++    F V+++G  IP+D   S+FN F        R+  G G
Sbjct: 588 ALKFTKTGHINVCIKALESPFVEFCVEDSGIGIPQDRMDSIFNEFEQAEVSTTRQYGGTG 647

Query: 756 LGLSIVESFINLHGGHVSISSS 777
           LGL+I +  + L  G +S+ S 
Sbjct: 648 LGLAICQKLVTLMNGQISVESG 669


>gi|147676581|ref|YP_001210796.1| hypothetical protein PTH_0246 [Pelotomaculum thermopropionicum SI]
 gi|146272678|dbj|BAF58427.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 487

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 3/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K  AL + D+ +  FV +VS+ELR+PL+ ++G+T+ L    L   ++ + +Y+  I 
Sbjct: 249 LQDKVAALERLDQTRREFVANVSHELRTPLSIMLGYTEAL-IDGLAHSDTDRQKYLNNIH 307

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  LV ++LDL+ ++AG +        +  +   V         +  + ++    
Sbjct: 308 EEILRLRRLVTELLDLSRMEAGQVNAEMHETDVAAVAGRVFDKFQAVAAKKGVELRNSLP 367

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L   +A+  RL Q+F  +L NA+  +  G  V + A     +   S+ + G  IP + 
Sbjct: 368 SVLHPVLANPDRLEQVFINLLDNAIRVTPAGGVVEMTAYELKNELRVSISDEGHGIPPEE 427

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              V+ RF  V  +      G GLGL+IV+  +  HGG V I+S  E  +T +  IP K
Sbjct: 428 QPLVWERFYKVDKSRTRTGEGTGLGLAIVKKIVEAHGGSVEIASMPEKGSTFSFTIPKK 486


>gi|309792184|ref|ZP_07686656.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225725|gb|EFO79481.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 887

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 1/249 (0%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+  +A+ AL    +   +  E+K+ FV   S+E R+PL  I+  T+ L   +  
Sbjct: 631 TLYDMTERKQADDALRLAWQKEHELSELKSRFVSMASHEFRTPLAAILATTETLTIYRDR 690

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              ++    ++ I      +  ++ D+L LA + AG M+       L+ L  E+ +   T
Sbjct: 691 MNEAQIDARLDKIRQQVMHMKEIMEDVLQLARIQAGRMEFRPLIEDLDALCREIVEEYET 750

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           ++ +   RI      +      D + + QI S ++SNA+ +S+  S+V +   R+    I
Sbjct: 751 QVRQPG-RIAYSCPQRPVLAEIDPRLMRQIISNLISNALKYSAPQSSVCITLQREVQRVI 809

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +V + G  IP +  K +F+ F    + G   G GLGLSI    I+LH G + I+S  + 
Sbjct: 810 LTVTDQGIGIPPNDLKRLFDPFHRATNVGTIAGTGLGLSIAHQAIDLHHGTIHIASEVDQ 869

Query: 781 VTTINCRIP 789
            TT+   IP
Sbjct: 870 GTTMTVTIP 878


>gi|293392823|ref|ZP_06637141.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
           4582]
 gi|291424682|gb|EFE97893.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
           4582]
          Length = 909

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 27/250 (10%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     L++ Q+ Y++ I  S+  LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTD----LSATQTDYLQTIERSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L +    L + L+EV   +A   HE  + + + + +      
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCK 736
           + D  RL Q+ + +L NA+ F+  G+  I    R+      +    + + G  I E    
Sbjct: 402 IGDSLRLQQVITNLLGNAVKFTETGNIDIRVELRNRFERQVELEVQIHDTGIGISERQQS 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS---------------DE 779
            +F  F        RR  G GLGL I +  +   GG +   S                +E
Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITLDLNE 521

Query: 780 GVTTINCRIP 789
           G+ T+  R+P
Sbjct: 522 GMLTLPSRLP 531


>gi|260773473|ref|ZP_05882389.1| aerobic respiration control sensor protein ArcB [Vibrio
           metschnikovii CIP 69.14]
 gi|260612612|gb|EEX37815.1| aerobic respiration control sensor protein ArcB [Vibrio
           metschnikovii CIP 69.14]
          Length = 783

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 126/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   L  +Q ++
Sbjct: 264 RDITERKRHQESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---LTDEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L ++ NDI+D+   D   ++L  + +   + + E++   A    +  +R 
Sbjct: 321 MQTIQVSAITLGHIFNDIIDMDKFDRRKLELLPAPLNFVEFVAELESLSALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKN 725
            +    +L +++  D  RL Q+   ++SNAM F+ +G  V+  +A  N    D    +++
Sbjct: 381 DLERLTELPTWIEVDATRLRQVLWNLMSNAMKFTKEGGVVMSVSADINPGSADITMEIED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  IPE     +F  +    S        G G+GL++    INL  G + + SS+EG  
Sbjct: 441 TGIGIPEHELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINLMAGDIEV-SSEEGFG 499

Query: 783 ---TINCRIP 789
              T+  R+P
Sbjct: 500 STFTVTIRVP 509


>gi|269957270|ref|YP_003327059.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305951|gb|ACZ31501.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894]
          Length = 347

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 16/244 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  +  E L  +D  +   + +VS+ELR+P+  +    +    + +  +       +E  
Sbjct: 100 AFNQMAEDLESSDRTRRDLIANVSHELRTPVAALQAQLE----NMVDGVTEPTPATLELS 155

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            A +  L  LV  +LDL+ V+AG   L  S + + DLL E  QS++      N+R  V +
Sbjct: 156 LAQTERLTRLVTYLLDLSRVEAGASALTISELAVGDLLEECAQSLSMVEAVKNLRYVVDV 215

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-P 731
           +   L    AD +RL QI   +L NA+  S  G  + L A  +  D +  V ++G  I P
Sbjct: 216 TPSDL-VLEADAERLRQIVVNLLQNAIRHSPPGGEIRLDAYPEGDDVVIEVADDGPGIAP 274

Query: 732 EDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787
           ED  + VF RF     RG+     G G+GL+IV   ++LHGG V++  S  G   T+   
Sbjct: 275 EDRDR-VFERFA----RGKVTASGGTGIGLAIVRWAVDLHGGQVAVVDSPGGAGATMRLV 329

Query: 788 IPSK 791
           +P++
Sbjct: 330 LPAR 333


>gi|239624689|ref|ZP_04667720.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239521075|gb|EEQ60941.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 378

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVEYISASSTILL 621
           R+++  KN  + +V+++LR+PLT+IIG+ +LL   +K+ +    Q +Y+E     +  L 
Sbjct: 138 RESERTKNELITNVAHDLRTPLTSIIGYLELLAGNTKIPA--DMQHKYIEIAYGKARRLE 195

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+     ++ G + ++ + + +  LL ++ +       E N+   + S+       
Sbjct: 196 KLIEDLFGFTKLNYGKISMHVAQVDVVKLLGQLLEEAYPNFVEKNLSYDLQSNIPAKIIT 255

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD   L ++F  ++ NA+ + + G  V++K   D+     SV N G  IP D    +FN+
Sbjct: 256 ADGNLLARLFDNLIGNAIKYGADGKRVLVKIHGDDDVVTVSVTNYGYVIPPDELPLIFNK 315

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788
           F  V  +      G GLGL+I +  +++HGG + ++S   G V T+  ++
Sbjct: 316 FYRVEQSRSSSTGGTGLGLAIAKEIVDMHGGTIQVASDLNGTVFTVKLQV 365


>gi|197120858|ref|YP_002132809.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196170707|gb|ACG71680.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 307

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +  +++  FV  VS+ELR+PLT+I  F + L+  +L     +Q + +E ++  +  L  L
Sbjct: 74  RVAKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQD-PQRQREALEIVAEETARLSGL 132

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N +LD A +++G      S   L  +L+    +   ++  + ++++     +L S +AD
Sbjct: 133 INRLLDWARMESGRRVYELSRQPLGPVLDAALAAFEPQLLHHPVQLERDLPPRLPSVMAD 192

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           R  L++    +L+NA  ++     + L A         +V +NG  IP+   K VF++F 
Sbjct: 193 RSALVEAVLNLLNNAFKYTGPDKRIRLSAVASGPTVTIAVTDNGPGIPQRDQKHVFDKFY 252

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             S+  R    G GLGL++V+  +  HGG VS+ S      T    +P
Sbjct: 253 RASDPLRRTVEGTGLGLAMVKHIVVGHGGKVSVESEPGCGATFRIALP 300


>gi|134096880|ref|YP_001102541.1| two component system histidine kinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909503|emb|CAL99615.1| two component system histidine kinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 504

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E LR  D  +  FV  V+++LR+P  +++   D L+     S    +S+ V  +S
Sbjct: 265 LGDSIEELRVKDRQQQRFVADVAHDLRTPTASLVAAADSLEHPDPES----RSRAVALVS 320

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  LV+D+L+++  D+G  +L    + L +L   V+++I     + ++R+   +D
Sbjct: 321 TQARRLARLVDDLLEISRFDSGAAELRPEGVDLREL---VREAIELVTCDADVRLDATAD 377

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L   V D +RL  I   +L+NA+   ++  TV +    D G  +  V ++G  +PE++
Sbjct: 378 TTL---VGDPRRLHTIVCNLLANAVHHGAEPVTVAIDGT-DPGQVVLRVADSGPGVPEEL 433

Query: 735 CKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            + +F+RFV  +  R    G GLG++I +    +HGG +++ +    V T+ 
Sbjct: 434 TRILFDRFVRGDRARSATDGSGLGMAIAQQNALVHGGRITVHNDGGAVFTLT 485


>gi|115376098|ref|ZP_01463343.1| KfaA [Stigmatella aurantiaca DW4/3-1]
 gi|115366913|gb|EAU65903.1| KfaA [Stigmatella aurantiaca DW4/3-1]
          Length = 625

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 4/232 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           DS R  + L      L+  ++ +   + +VS++L++PLT I  +  L+   KLG L   Q
Sbjct: 216 DSARRNKDLQTAIAGLKSLEQNREELLGNVSHDLKNPLTTIKAYLTLVGREKLGPLTDGQ 275

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+    +S  +L +VND+L ++ + +G M+L      +  +  EV +++A     + 
Sbjct: 276 RRAVQICERNSDRMLRMVNDLLLMSRLQSGKMQLTQRAFGIKAVAEEVLRALAALAEHSQ 335

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +R+ V    ++  FV  DR+R+ +    ++ N +    +G TV ++ + D    + SVK+
Sbjct: 336 VRLHVPPCPEV--FVRGDRERISEAIHNLVENGIHQCEEGGTVEVRVSIDEQLALLSVKD 393

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVG-LGLSIVESFINLHGGHVSISS 776
           +G  + ++  + +F+ F        R   G LGL +V   + LHGG V  SS
Sbjct: 394 SGPGLSQEDLEHIFDPFYRTTPGTPRPSGGRLGLPLVAKILALHGGRVDASS 445


>gi|88859894|ref|ZP_01134533.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88817888|gb|EAR27704.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 903

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 132/244 (54%), Gaps = 12/244 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVE 611
           + L +    LR A+E K+ F+ ++S+E+R+P+T+IIG+ D +    LG +  +  ++ V+
Sbjct: 411 QMLEQMTHELRDANEAKSRFLANMSHEIRTPMTSIIGYADGI---ILGDIEPRNHAKAVQ 467

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +   +L ++NDILD++ ++A  +++ +    L   +  V+  +  ++ +  +  KV
Sbjct: 468 VIAQNGNHVLGIINDILDMSKIEANKLEVEWIETDLFATIANVESILGKQIRDKGLEFKV 527

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           + +  L +  + D  RL QI   + +NAM F+  G+  ++ + +D    I  V+++G  +
Sbjct: 528 LYEFPLPNKIIIDPTRLRQILLNLTNNAMKFTDYGAITLIVSFKDE-KLIIRVRDSGIGM 586

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS----SDEGVTTI 784
            ++  + +F  F        R+  G GLGL+I ++  +  GG +S+ S      E + T+
Sbjct: 587 TKEQTQKLFEAFSQADTSTTRKYGGTGLGLNISKNLAHKLGGDISVKSEIGKGSEFIVTL 646

Query: 785 NCRI 788
            CR+
Sbjct: 647 TCRL 650


>gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1236

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D  + +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 456

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 164/339 (48%), Gaps = 34/339 (10%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV  F  + RI L N A R +   +   L  G HI  I      Y       DLF  +  
Sbjct: 124 GVIAFDNNERILLINDAARKILNIKGKDLI-GKHILEIVRNSKLY-------DLFEDVKK 175

Query: 506 SFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           + +   KSL+  L + +  +  Y S I  P +   L FV + D +      TE    +R+
Sbjct: 176 NKNSPSKSLE--LNVFNKHLKVYTSPILHPISHQNLGFVLIIDDI------TE----MRR 223

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            ++I+N FV +VS+ELR+PLT+I GF + L+   + +  ++  ++++ I   S  L  L+
Sbjct: 224 LEKIRNEFVANVSHELRTPLTSIRGFIETLRNGAIENPEARD-KFLDIIDFESERLTRLI 282

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFV- 681
           NDIL L+ ++   +K  Y T    +L NE++    I  KM  N   I +I D      V 
Sbjct: 283 NDILTLSEIEN--VKEGYPT-EETELDNEIEDILYIMDKMARNK-NITLIKDLNCPGLVI 338

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVF 739
             ++ R  Q+   ++ N + ++ +G  V + + R+ GD  I  VK+NG  I ++    +F
Sbjct: 339 NTNKDRFHQMMINLIDNGIKYTPEGGFVKV-STREEGDKIIIEVKDNGIGISKENIPRLF 397

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  V  +   +  G GLGL+IV+  +    G +S+ S
Sbjct: 398 ERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVES 436


>gi|189464941|ref|ZP_03013726.1| hypothetical protein BACINT_01285 [Bacteroides intestinalis DSM
           17393]
 gi|189437215|gb|EDV06200.1| hypothetical protein BACINT_01285 [Bacteroides intestinalis DSM
           17393]
          Length = 664

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 23/247 (9%)

Query: 553 RALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L E  E LRKA E+       K  F+Q++S+E+R+PL +I+GF+ +L    +  L+ K
Sbjct: 425 RILIEAKEELRKAKEVAEQSNWLKTMFIQNMSHEIRTPLNSIVGFSGVL----VDMLDDK 480

Query: 606 Q--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +   QYV  I ++S +LL LV DILD++ +D+ + ++ ++ + +N        +  T   
Sbjct: 481 EDIGQYVALIESNSKLLLKLVGDILDISILDSEV-EIKHNAVDVNACCQASIDAAGTLFS 539

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720
            +    K+I        +  ++   ++Q+   +LSNA  F+ +GS T+  +  ++    I
Sbjct: 540 PDT---KLIFKPACDELIINSNYNYIVQVLDNLLSNASKFTHEGSVTLAYEVKKETNQLI 596

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779
           F+V + G  IP D  + VF RFV   +  Q  G GLGLSI        GG + I     +
Sbjct: 597 FTVTDTGIGIPIDEQEHVFERFVKLDNFSQ--GAGLGLSICRIVAERLGGFLIIDREYTQ 654

Query: 780 GVTTINC 786
           G   I C
Sbjct: 655 GTRFIFC 661


>gi|153870405|ref|ZP_01999814.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS]
 gi|152073130|gb|EDN70187.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS]
          Length = 620

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 39/285 (13%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---E 567
           RKS+Q  L++  D                   +  T+  +AE A  E   A  KA+   +
Sbjct: 113 RKSIQSQLKIAKD-------------------IAETEKKQAEIARKEAEVAQEKAEIANQ 153

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+ELR+PL  I+G+  +L+  K  SLN++Q   +  +  S   LL L+NDI
Sbjct: 154 AKSEFLASMSHELRTPLNGILGYAQILRRDK--SLNNQQQYAIHTMQKSGEHLLTLINDI 211

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           LDL+ ++A  M+L+      +  L E+   I  +     +  +   +  L   V  D  R
Sbjct: 212 LDLSKIEAQKMELHQQDFHFSHFLTEIVDMIQVRAMPKTLEFQHDFEANLPIAVNGDETR 271

Query: 687 LLQIFSKILSNAMDFSSKGST---VILKAARDN----------GDFIFSVKNNGSSIPED 733
           L QI   +L NA+ F+ +G     VIL   ++            +  F +++ G  I  +
Sbjct: 272 LRQILVNLLGNAVKFTERGKVTFKVILIGEKEKKIENRESSPLPNIRFQIEDTGPGIAPE 331

Query: 734 MCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             K++F  F      R    G GLGL + + F+ +    + ++S+
Sbjct: 332 FLKTIFEPFQQVGTERYITEGTGLGLPLSQKFVEMMDSSLQVTST 376


>gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
          Length = 1770

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 133/248 (53%), Gaps = 14/248 (5%)

Query: 538  TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
             +++ V++T+  + ++  L  K EA   A + K  F+ ++S+E+R+P+  IIG + L L+
Sbjct: 1009 AVVSMVDMTELKLLSDELLIAKEEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            T+    L+ KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++ 
Sbjct: 1068 TA----LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLS 1123

Query: 656  QSIATK-MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----IL 710
               + K +H+    +  ++         D  RL Q+   +++NA+ F+ +G  +    ++
Sbjct: 1124 DMFSEKVVHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLV 1183

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            +   D+    FSV+++G  + ++    +F  F        R+  G GLGL+I +  + L 
Sbjct: 1184 EQQNDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELM 1243

Query: 769  GGHVSISS 776
            GG++ + S
Sbjct: 1244 GGNIGVES 1251


>gi|91210085|ref|YP_540071.1| hybrid sensory histidine kinase TorS [Escherichia coli UTI89]
 gi|117623191|ref|YP_852104.1| hybrid sensory histidine kinase TorS [Escherichia coli APEC O1]
 gi|218557884|ref|YP_002390797.1| hybrid sensory histidine kinase TorS [Escherichia coli S88]
 gi|237707026|ref|ZP_04537507.1| sensor protein TorS [Escherichia sp. 3_2_53FAA]
 gi|91071659|gb|ABE06540.1| sensor protein TorS [Escherichia coli UTI89]
 gi|115512315|gb|ABJ00390.1| sensor protein TorS [Escherichia coli APEC O1]
 gi|218364653|emb|CAR02339.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli S88]
 gi|226898236|gb|EEH84495.1| sensor protein TorS [Escherichia sp. 3_2_53FAA]
 gi|307627594|gb|ADN71898.1| hybrid sensory histidine kinase TorS [Escherichia coli UM146]
 gi|323953312|gb|EGB49178.1| TMAO reductase sytem sensor TorS [Escherichia coli H252]
 gi|323958286|gb|EGB53995.1| TMAO reductase sytem sensor TorS [Escherichia coli H263]
          Length = 910

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  + +  R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 615 PFVQVSSK--RGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661


>gi|46581465|ref|YP_012273.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450887|gb|AAS97533.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311235117|gb|ADP87971.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1080

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 14/226 (6%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +++E+R+P+T IIG  D+   S  G L  +  +++E + +SS  LL+++N +LD +
Sbjct: 269 FLAAITHEVRTPMTGIIGLLDI---SLRGQLEPRLREHLEIVRSSSHALLDVINGVLDFS 325

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQI 690
            ++AG +++      L + + +V       + E ++ + +     L   VA D  RL Q+
Sbjct: 326 RIEAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASDLPCKVAGDPTRLRQV 385

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              I+ NA  F+ +G  V+  +    GD      F+V++ G  IP +  K +F  F    
Sbjct: 386 LVNIVGNAFKFTEQGEIVVRISHERQGDGSVLLRFAVRDTGVGIPAEARKRLFEMFSQAD 445

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT----TINC 786
               RR  G GLGL+I    + L GG + + S+    T    T++C
Sbjct: 446 ASVARRFGGSGLGLAIARELVRLMGGSIEVDSTPGRGTVFRFTVHC 491


>gi|108803625|ref|YP_643562.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764868|gb|ABG03750.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 584

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 5/229 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  +  K++FV   S+ELR+PLT I     LL+ ++   L+  +++ +E      + +  
Sbjct: 347 RALERAKSAFVSDFSHELRTPLTTIQSAVGLLQRARE-RLDPLENRALELAEGELSRIRA 405

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +V +++ LA +D+    L  +   L+ +L +  +++  K     I I +   G       
Sbjct: 406 MVEELMTLAQMDSWQYSLQLAPAGLDRILRDAVEAVEPKALRFGIEINLYEAGV--HLTC 463

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D Q+L Q+F  +L NA+ +S +GS V +  A      +  VK+ G  IPE     +F RF
Sbjct: 464 DAQKLYQVFLNLLDNAVKYSEEGSRVDVTVAESGEQAVVRVKDTGVGIPEKDLPHLFERF 523

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V         G GLGL+I +  + +HGG +S+ S     +T   R+P
Sbjct: 524 YRVEKDRSRSTGGSGLGLAICKQIVEMHGGSISVESRLGEGSTFTVRLP 572


>gi|327308180|ref|XP_003238781.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
 gi|326459037|gb|EGD84490.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
          Length = 2415

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 18/232 (7%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+ ++S++LR+P+T +IG ++LLK +KL   + KQ  YVE I   +  LL L+
Sbjct: 1882 AAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL---DPKQDVYVESIRVCADTLLTLI 1938

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RIKVISDGKLGSF 680
            NDILD + ++AG MK++   I L   + EV +++     E  +     +  I    L   
Sbjct: 1939 NDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLDTVEDLDSIDPDLL--V 1996

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCK 736
            + D  RL QIF  +LSN+  F+  GS  +     ++          V + G  I E+   
Sbjct: 1997 MGDPVRLHQIFMNLLSNSYKFTPVGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQLD 2056

Query: 737  SVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTTI 784
             +F  F S A     R   G GLGLSI ++ I ++ GG + + S +   TT+
Sbjct: 2057 RLFRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTV 2107


>gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1070

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 124/252 (49%), Gaps = 5/252 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T   RAE AL E       + ++K+ F+ ++S+ELR+PL  I+G++++L+       
Sbjct: 542 LDITLRKRAEEALQEARRQAEDSSQLKSMFLANMSHELRTPLNAILGYSEMLQEDAAVMG 601

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +    +  I ++   LL L+ND+LD++ ++AG M +    + +  L+ +V  +I   +
Sbjct: 602 AQEMVGDLAKIHSAGEHLLRLINDVLDISKIEAGKMDVYLEEVNIARLVRDVADTITPLV 661

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF 719
            +N     +     LG+   D  ++ QI   +L+NA  F+  GS  +    +  R+    
Sbjct: 662 RKNKNHFHLECGQNLGAMHTDLTKVRQILFNLLNNAAKFTQNGSITLRVQCQEDREIPTI 721

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F V + G  I +    S+F  F        R+  G GLGL+I +S+ +L GG ++  S 
Sbjct: 722 SFQVIDTGIGIEQQRLSSLFQSFTQADVSISRKYGGTGLGLAISQSYSHLLGGGITAHSK 781

Query: 778 DEGVTTINCRIP 789
               +T    +P
Sbjct: 782 PGAGSTFCLTLP 793


>gi|225419699|ref|ZP_03762002.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
           DSM 15981]
 gi|225041663|gb|EEG51909.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
           DSM 15981]
          Length = 926

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 13/230 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + EA       K+ F+  +S+E+R+P+  IIG TDL  T K   +  +  + ++ I 
Sbjct: 543 LQSRLEAAEAKSTAKSVFLSQMSHEIRTPMNAIIGLTDL--TCKERDVPPEIEKKLKKIR 600

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS  LL L+NDILD++ ++ G M++      L+ +L E++  ++T+  +  +  +V   
Sbjct: 601 SSSQYLLALINDILDMSRIENGKMEIEQKDFSLSLVLQELQSMMSTQAEQKGLEFQVDFY 660

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSI 730
                   D  RL Q+   +LSNA+ F+  G  V L+    +  +  ++ FSV++ G  I
Sbjct: 661 VSHDWLAGDPVRLRQVLINLLSNAVKFTPAGGKVTLRVNEQSCGEEMEYRFSVQDTGVGI 720

Query: 731 PEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P +  + +F+ F     S +H     G GLGL I  +   L GG + + S
Sbjct: 721 PYEDQERIFSSFEQLRPSISHSA---GTGLGLPISRNIARLMGGDLEVKS 767


>gi|170025666|ref|YP_001722171.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           YPIII]
 gi|169752200|gb|ACA69718.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
          Length = 942

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 286 QEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + I++      
Sbjct: 342 CIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHINNDVPDQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+    V++KA A      +  + + G  I E    
Sbjct: 402 LGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGIGISESQQA 461

Query: 737 SVFNRF-VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            +F  F  ++A    R  G GLGL I E  +   GG++S  S
Sbjct: 462 QLFQAFRQADASTSLRHGGTGLGLVITERLVKEMGGNISFQS 503


>gi|167588844|ref|ZP_02381232.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 496

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 7/213 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+ELRSPL  I+GF  L+  S L      Q   ++ I  +   LL L+ND+L
Sbjct: 117 KSDFLSSMSHELRSPLNAILGFAQLM-ASDLPPPTPSQQASIDQILRAGWHLLELINDVL 175

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +++G + ++   + L D L E +  I  +  +  IR+            ADR R  
Sbjct: 176 DLAKIESGQVAISPEPVSLRDALRECESMIEPQARQRGIRVSFPEVESHCHVRADRTRFR 235

Query: 689 QIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSV---FNRFVS 744
           QI   +LSNA+ ++     V +    R  G    SV++ G  + ++    +   FNR   
Sbjct: 236 QILLNLLSNAIKYNRPSGAVDVDCDLRAPGRIRVSVRDTGLGLSQEQLGQLFQPFNRLGQ 295

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +A  G   G G+GL + +    L GG +   S+
Sbjct: 296 DA--GAEEGTGIGLVVAKRLTELMGGAIGADST 326


>gi|134291091|ref|YP_001114860.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134280|gb|ABO58605.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 989

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 9/249 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTE----KNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + QT    V + D +   +AL E      +A   A   K+ F+ ++S+ELR+PL  I+G+
Sbjct: 503 SGQTAHVIVIIQD-ISERKALEETVRVAKDAAEAASRAKDQFLANISHELRTPLNGILGY 561

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             +L+  +   L+++Q   V  I  S   LL L+NDILD A + AG ++L    + L   
Sbjct: 562 AQILQ--RDARLDTRQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGF 619

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L  + + +A +  +  + +  ++   L + V  D +RL Q+   +L+NA+ F+  G   +
Sbjct: 620 LETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVQFTDHGEVTL 679

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLH 768
             +    G   F V++ G  +  D  +++F  F  +  H  +  G GLGL+I    + + 
Sbjct: 680 SVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQAGDHTRRGGGAGLGLAISRQLVRMM 739

Query: 769 GGHVSISSS 777
           GG + ++SS
Sbjct: 740 GGEIEVTSS 748


>gi|301062848|ref|ZP_07203441.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300443048|gb|EFK07220.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 444

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 125/251 (49%), Gaps = 15/251 (5%)

Query: 549 VRAERALTEK-----NEALRKADEIKNSF---VQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           VR ER   ++     NE L K D +  +    + +V+++LR+P+T + G  +      L 
Sbjct: 193 VRKERGEMDELVGLFNEMLDKNDSLIQAMHNSLDNVAHDLRTPMTRLRGVAEF----ALQ 248

Query: 601 SLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              ++++  + +      S  +L ++N ++D+A  + G+M+L  + + L+ ++ +V    
Sbjct: 249 DATNREACREALGDCMEESERVLTMLNTLMDVAEAETGVMRLQKTALSLSHVIEDVVDLY 308

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                E N  + +  D K     ADR RL Q+ + +L NA+ +  KG TV +++  +  +
Sbjct: 309 EIVAEEQNTNVHLNLD-KTIMIQADRTRLQQVLANLLDNALKYGGKGGTVSVESMAEGAE 367

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + SV + G  I E+    ++ R     +   RRG+GLGLS V++ +  HGG V + S  
Sbjct: 368 AVISVSDKGMGIAENEISRIWERLYRGDYSRSRRGLGLGLSFVKAIVEAHGGSVQVKSRL 427

Query: 779 EGVTTINCRIP 789
              +T   ++P
Sbjct: 428 REGSTFIVKLP 438


>gi|257094177|ref|YP_003167818.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046701|gb|ACV35889.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 789

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 115/221 (52%), Gaps = 7/221 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PL  I+GF  LL      +L+++Q+  V+ I  +   LL  VN++LDLA
Sbjct: 545 FLSRMSHELRTPLNAILGFGQLLAMPGDAALSAEQADNVQEILRAGRHLLGQVNEVLDLA 604

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
            V++G ++L    + L  ++ +    +        I I   I D  L    AD +RL Q+
Sbjct: 605 RVESGRIELKLEAVPLAPIVADCVALVRPLAEARGISIDADIDDAPL---RADAKRLQQV 661

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
              +LSNA+ F+ +  T+ +   R  G    +V ++G  I  +  + +F  F  +++A+ 
Sbjct: 662 LLNLLSNAIKFNREQGTIRIAGTRHGGRLRLAVSDSGRGIDSEHLQRLFQPFERLASAYD 721

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G   G G+GL++ +  +   GG + ++S  +  +T +  +P
Sbjct: 722 GI-EGTGVGLALTQRLVEAMGGIIQVASQLDVGSTFSLDLP 761


>gi|149926094|ref|ZP_01914357.1| Signal transduction histidine kinase [Limnobacter sp. MED105]
 gi|149825382|gb|EDM84593.1| Signal transduction histidine kinase [Limnobacter sp. MED105]
          Length = 1023

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 117/236 (49%), Gaps = 20/236 (8%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYV 610
           E A+  K E    A+  K+ F+  +S+E+R+PL  I+GF  LL+     G L  +     
Sbjct: 641 ETAIAAKAEKDSNAE--KSRFLATMSHEIRTPLNGIMGFARLLEMDLPAGELKEQAG--- 695

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            Y+  SS  L  ++NDILD + +++G++KL  S  ++  LL    +          ++ +
Sbjct: 696 -YLVQSSETLSAILNDILDFSKLESGMVKLVDSPFLMEQLLKGSTELPRLTCESKGVKFE 754

Query: 671 VISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSV 723
           +  + KLG    F  D  RL QI   +LSNA+ F+S G    TV       N D I F V
Sbjct: 755 L--NNKLGEHQIFSGDMGRLRQILQNLLSNAIKFTSHGKVSLTVSNTQISPNEDLITFEV 812

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            + G  IP++    +F  F S  H  +     G GLGLSIV+S IN  GG + + S
Sbjct: 813 SDTGLGIPKEKQSLLFKPF-SQVHTDRENRFGGTGLGLSIVKSLINAMGGEIQLES 867


>gi|120601365|ref|YP_965765.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561594|gb|ABM27338.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1080

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 14/226 (6%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +++E+R+P+T IIG  D+   S  G L  +  +++E + +SS  LL+++N +LD +
Sbjct: 269 FLAAITHEVRTPMTGIIGLLDI---SLRGQLEPRLREHLEIVRSSSHALLDVINGVLDFS 325

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQI 690
            ++AG +++      L + + +V       + E ++ + +     L   VA D  RL Q+
Sbjct: 326 RIEAGKLRIERIPFALRESVEDVLDLFRAHLAERDVALVLDMASDLPCKVAGDPTRLRQV 385

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              I+ NA  F+ +G  V+  +    GD      F+V++ G  IP +  K +F  F    
Sbjct: 386 LVNIVGNAFKFTEQGEIVVRISHERQGDGSVLLRFAVRDTGVGIPAEARKRLFEMFSQAD 445

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT----TINC 786
               RR  G GLGL+I    + L GG + + S+    T    T++C
Sbjct: 446 ASVARRFGGSGLGLAIARELVRLMGGSIEVDSTPGRGTVFRFTVHC 491


>gi|45657908|ref|YP_001994.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45601149|gb|AAS70631.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 974

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  + +K + L  + + K+ F+ ++S+ELR+PL +++  +  L  +K  +L+  Q +  
Sbjct: 531 AKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKRKNLSEDQVESA 590

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+ND+LDL+ +++G M +N   +VL     E+  +   +  E  + + 
Sbjct: 591 NIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTFKLQATEKKLDLD 650

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +I D  L   +  D  RL QI   ++SNA+ F+ +G   +    ++    +FSV ++G  
Sbjct: 651 LIFDDDLPEVIRTDSHRLNQILKNLISNALKFTERGKVQVEIKKQNKDKILFSVIDSGIG 710

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+   ++F  F        R+  G GLGLSI      L GG + + S     +T +  
Sbjct: 711 IPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFLKSKVNQGSTFSLS 770

Query: 788 IP 789
           +P
Sbjct: 771 LP 772


>gi|298252237|ref|ZP_06976040.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546829|gb|EFH80697.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 968

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 16/232 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTD----LLKTSKLGS-LNSKQSQYVEYIS 614
           E +R+++++K+ F+   ++E R+PLT I+  +     LL+  +L   L  K  + +  I 
Sbjct: 715 ELMRQSNDLKDEFLDITAHEFRTPLTIIVAHSQMMARLLRKHQLEPVLQDKLHESIATID 774

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIKVI 672
                L N+VN  L++  ++ G + LN   + +  ++     + ++ + MH    +++  
Sbjct: 775 QQGHQLTNIVNTFLEVTRLNRGQIVLNTEELDVQRIVERTVAEHAMTSPMHTITCQVQTG 834

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGD-FI-FSVKNNG 727
           +   L   + D  RL Q+F+ +L NA+ +S  G ++ +   +    +GD F+   +++ G
Sbjct: 835 AHPYL--ILGDSARLSQVFANLLQNAIKYSPFGGSITVTLQQTPNASGDPFVEIRIQDQG 892

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             IP D    +F RF    N    + RGVGLGL +V  F++LHGGH+ + SS
Sbjct: 893 IGIPLDAQARLFERFYRAPNIEGNKTRGVGLGLYVVAQFLSLHGGHICVESS 944


>gi|269139680|ref|YP_003296381.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|267985341|gb|ACY85170.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|304559549|gb|ADM42213.1| Two-component sensor protein RcsC [Edwardsiella tarda FL6-60]
          Length = 956

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 130/255 (50%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 442 AICAMVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK 501

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L  +  + +  +S SS +LL ++NDILD + +++  +K+     V  +++  +  +
Sbjct: 502 ---TLPEEVQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGN 558

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  +  +   D  R+ Q+ S +LSNA+ F+  G  +IL+A  ++
Sbjct: 559 YLPLVVRKRLTLYCFIEPDVPEALSGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVND 617

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
               F V++ G  IP      +F+ F       QR   G GLGL+I E  ++L  G +++
Sbjct: 618 FYLEFRVRDTGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAV 677

Query: 775 SSSDEGVTTINCRIP 789
            SS    +    R+P
Sbjct: 678 ESSPGLGSIFTIRLP 692


>gi|253576380|ref|ZP_04853710.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844273|gb|EES72291.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 479

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 10/215 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++++  FV +VS+E+R+PL+ + G+++ L    + S   + ++  + I   S  +  LV 
Sbjct: 243 EKMRRDFVANVSHEIRTPLSMMQGYSEAL-LDGMASSPEESAELAQVIYDESLRMGRLVR 301

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684
           D+LDLA ++AG   +    I   +L   V +    +  +N + + + + DG+L    AD 
Sbjct: 302 DLLDLARMEAGHTDMVMRKIDFRELAERVDRKFQVRAKDNGVELVLELEDGEL-QLQADE 360

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFN 740
            RL Q+ + +L NA   + +G  V +KA  + G+       +V + G  IP +  + +F+
Sbjct: 361 DRLEQVLTNLLDNAFRHTPEGGKVTVKAHMETGEMGKQLHVAVSDTGVGIPSEDLRYIFD 420

Query: 741 RFVSNAH---RGQRRGVGLGLSIVESFINLHGGHV 772
           RF        RG+  G GLGLSIV++ I  H G +
Sbjct: 421 RFYKADKARVRGENGGTGLGLSIVKNIIAAHHGSI 455


>gi|86605618|ref|YP_474381.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
 gi|86554160|gb|ABC99118.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
          Length = 573

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 17/254 (6%)

Query: 551 AERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           A + L +KN+ L +A       +++K+ F+ + S+ELR+PL  IIGF  L+    +    
Sbjct: 289 ANQTLRQKNKELEQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIRLV-LDGMAESR 347

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  +++    S+  LL L+ND+LD+A ++AG M+L +    L  L  +V+     +  
Sbjct: 348 EEELDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLQFEPCDLRALFKDVEAKTGLQAK 407

Query: 664 ENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGD 718
           +  +++   +           D QRLLQ+   ++ NA+ F+ KGS V ++A     D G 
Sbjct: 408 QKGLQLSFHLPPTPDRIWLYGDYQRLLQVMLNLVGNAIKFTPKGS-VTVRADLLPGDPGM 466

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V + G  +  +  + +F  F  V  +   Q  G GLGL+I +  +   GG ++  S
Sbjct: 467 ARIRVIDTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYS 526

Query: 777 SDEGV-TTINCRIP 789
             EG+ +T+   +P
Sbjct: 527 LGEGLGSTVTFTVP 540


>gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1236

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D  + +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|311031670|ref|ZP_07709760.1| multi-sensor hybrid histidine kinase [Bacillus sp. m3-13]
 gi|311032342|ref|ZP_07710432.1| multi-sensor hybrid histidine kinase [Bacillus sp. m3-13]
          Length = 549

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 132/251 (52%), Gaps = 6/251 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++ ++ R  R + EKNE  R++ + K +F+  +S+ELR+PL +IIG++ +L++ +   L
Sbjct: 300 LHLKENERKLRLIIEKNEVERES-KTKTNFLAMISHELRTPLNSIIGYSQVLESDQKDPL 358

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAG--IMKLNYSTIVLNDLLNEVKQSIAT 660
             KQ   +  I +SS  LL L+N+IL+L  +D     +K N   I + D + +   +++ 
Sbjct: 359 TDKQKSRLAKILSSSRHLLQLINNILELIRIDTNPETIKTNVKPIRIKDAVWDSLHAVSN 418

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I + +  D +  +   D  R  Q+   +L+NA+ ++ +  TV L    D     
Sbjct: 419 NAKEKGISLYIEKDVEDITIEIDPIRFQQVLVNLLNNAIKYNKENGTVTLYWRVDGRYLA 478

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             VK+ G  IP+    ++F  F  V++A  G   G G+GL++V+  +    G V +SS +
Sbjct: 479 IFVKDTGIGIPQSHHDNIFEPFYRVNHAIPGV-EGTGIGLTLVKQNVLEMKGTVGVSSIE 537

Query: 779 EGVTTINCRIP 789
              +T   ++P
Sbjct: 538 GTGSTFWVKVP 548


>gi|300697800|ref|YP_003748461.1| sensory histidine kinase in two-component regulatory system with
           BaeR [Ralstonia solanacearum CFBP2957]
 gi|299074524|emb|CBJ54075.1| sensory histidine kinase in two-component regulatory system with
           BaeR [Ralstonia solanacearum CFBP2957]
          Length = 533

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 17/240 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYISA 615
           E L    +++      +S+ELR+PL  + G      D ++     SL S Q++       
Sbjct: 290 ETLEANQKMRRQLTADISHELRTPLAVLRGELEALEDGVRALTPASLTSLQAEV------ 343

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---I 672
               L  L++D+ +L+  D G +  +   I L D +    Q   +++ E  I +++    
Sbjct: 344 --GTLSKLIDDLYELSLADVGALAFHMEAIDLTDTVCSAAQGFTSRLMEKRIALQLDLPT 401

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +  +   D QRL Q+   +L N + ++  G T+ ++  RD   +   V+++   +PE
Sbjct: 402 GPSRDAAIQGDPQRLRQLMQNLLENTLRYTDAGGTLRIRVHRDGAWWCLDVQDSAPGVPE 461

Query: 733 DMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            M   VF+R F ++  R + + G GLGLS+ ++ +  HGG +    S  G   +  R+P+
Sbjct: 462 AMLPRVFDRLFRADPSRSRAQGGAGLGLSLCQTIVQAHGGTIEARPSPLGGLWLAIRLPA 521


>gi|291566313|dbj|BAI88585.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 655

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 34/348 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPA--------FRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           +D   EG+     DG+I   NPA         R L  ++  +++ G H R  + T    +
Sbjct: 307 LDSAGEGICGLNRDGKITFINPAGARMTGYDIRELIMSDLRQITKG-HCR--SQTPGEPH 363

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQT-MLTFVNVTD 547
            +S      + I  + +D      G +  ++D V    + +I+P+    T M     +  
Sbjct: 364 PDSLQP---SPIFATLED------GKVRYVTDGVFWRKDGTILPVEYVSTPMRQEGAIIG 414

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +V   + +TE+ +A+ K   +K+ F+  VS+ELR+PLT+I G   LL +  L S   K  
Sbjct: 415 AVITFKDITER-QAMEK---MKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPQKSE 470

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + ++    +   L+ LVNDILDL  + +G + +    + + DL+ +    +     +  +
Sbjct: 471 RMLDIAMFNCDRLMRLVNDILDLERMHSGQLPMEKHWVNVADLMIQAADEMLPVAEKAGV 530

Query: 668 RIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            + V+  + K+   + DR R++Q+ + +LSN++ FS     +   A       + SV++ 
Sbjct: 531 DLCVVPLEFKV---MVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENHVLISVRDR 587

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           G  IP D  +++F RF  V  +   Q  G GLGL+I  S +  HGG +
Sbjct: 588 GRGIPPDKIETIFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKI 635


>gi|239906623|ref|YP_002953364.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796489|dbj|BAH75478.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 484

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 11/235 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ + ++  F+  VS+E+R+PLT+I    +L++   LG +N +Q ++++  S     + 
Sbjct: 248 LKEEERMRADFIDMVSHEIRTPLTSIRESVNLMRERVLGDVNERQKRFLDIASDELQRIS 307

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++  +L ++++ + I+ L   T    +LL E  +         +I +       + S V
Sbjct: 308 AMLTSLLKVSSMASQIVDLAPVTFNPEELLRETLEKAGPGAEAKDIALTPRVAKDIVSVV 367

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            DR+ L Q    ++ NA+ FS  G TV   L+ A      + S+ + G  IPE+    VF
Sbjct: 368 GDRELLGQALYNLVGNAVKFSPAGRTVRVGLELADGGQKVLASISDEGPGIPEEEQAYVF 427

Query: 740 NRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           N++    +RG R      G+GLGLSI ++ +  HGG++ +SS      T    IP
Sbjct: 428 NKY----YRGARTKRSTDGIGLGLSIAKTIVEAHGGNIWLSSLPGKGCTFYFTIP 478


>gi|229103156|ref|ZP_04233842.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
 gi|228680261|gb|EEL34452.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
          Length = 312

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 3/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +  R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I 
Sbjct: 74  LKESIDEERQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIY 132

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              T L  L+ND+ +   V    + L  + I + +LL ++      ++ E NI+ +    
Sbjct: 133 GKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANIQCRPSFP 192

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +    +AD  +L+++F  ++ NA+ + ++G  + L A   N      + N G  IP   
Sbjct: 193 SQKLMVLADGDKLVRVFENLIINAIAYGNEGGYIDLTAYESNNMITIDITNYGQPIPSTD 252

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F RF  V  +      G GLGL+I +S + LH G + + S D+  T     +P K
Sbjct: 253 LPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 311


>gi|148979053|ref|ZP_01815298.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
 gi|145962026|gb|EDK27314.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
          Length = 1129

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ A+++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ 
Sbjct: 444 KTIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPIPANQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670
           I  S   L  LV+D+LD   +  G + +  S + L+   + V +     +    IRI  +
Sbjct: 504 IINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRIINQ 563

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V SD  LG   +D QRL Q+   ++ NA+ ++S+G  VI  +  D+ +    V + G  I
Sbjct: 564 VPSD--LGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDD-NIRVQVVDTGQGI 620

Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +
Sbjct: 621 PAEYLEHIFEPLIQAGQDASNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTL 680

Query: 789 P 789
           P
Sbjct: 681 P 681


>gi|294491224|gb|ADE89980.1| sensor histidine kinase/response regulator TorS [Escherichia coli
           IHE3034]
 gi|315287606|gb|EFU47012.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 110-3]
          Length = 900

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  + +  R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVSSK--RGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|187776723|ref|ZP_02993196.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC
           15579]
 gi|187775382|gb|EDU39184.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC
           15579]
          Length = 906

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 128/243 (52%), Gaps = 7/243 (2%)

Query: 554 ALTEKNEALR-KADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVE 611
           A T+KN  L  +++ ++++ ++ +S++LRSPL  I G  + +++   L S N K+ + ++
Sbjct: 663 AETQKNSKLEIESERLRSNLLRSISHDLRSPLAGIKGSVSTIIENGNLIS-NDKKEELLQ 721

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +   +  L+ LV ++L +   + G M++  +  ++ +++ E  Q  + +  +  I++K+
Sbjct: 722 GVYDDTEWLIRLVENLLSMTRFEEGNMEIKKNMELVEEVIYEAVQRTSKRFKDRKIKVKI 781

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +  +     D   + Q+   +L N++ F+ K S + ++A        F V +NG+ I 
Sbjct: 782 PENVIMAPM--DGSLIKQVLINLLDNSLKFTPKDSLIEVRAYEKEEKVFFEVIDNGNGIS 839

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E++   +F+RF +N  +    RRGVGLGL+I +S +  H G +   +   G       IP
Sbjct: 840 EEILPHIFDRFFTNGSKISDSRRGVGLGLAICKSIVEAHNGMIDAYNKKAGGAVFRFYIP 899

Query: 790 SKE 792
            +E
Sbjct: 900 KEE 902


>gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 998

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 10/233 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  + +F+  VS+E+R+P+  +IG + LL+ +   +L+++Q ++   I  S+  L+ +
Sbjct: 350 QANAARGAFLSTVSHEIRTPMNAVIGMSGLLRET---ALDAQQEEFTVAIEDSANALMVI 406

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA- 682
           +++ILD + +DAG + +  +   L  L+     ++A K  +  +R+    +  L   V+ 
Sbjct: 407 IDEILDFSRIDAGKLTIEATDCHLLSLVEGSADALAVKARQQGLRLLCFVEPDLPVTVSV 466

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARDNGDFI---FSVKNNGSSIPEDMCKSV 738
           D  RL Q+   ++ NA+ F+  G   IL +      D     F V + G  I   +   +
Sbjct: 467 DAGRLRQVLLNLIGNAVKFTPAGEVRILVRQVNRQHDLCTVRFEVADTGIGITAPVIALL 526

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FN FV       R+  G GLGLSI +  + L GGH+ + S     +T    +P
Sbjct: 527 FNPFVQADGSVTRKYGGTGLGLSICKRLVELMGGHIGVDSKPGAGSTFWFELP 579


>gi|315640402|ref|ZP_07895514.1| sensor histidine kinase [Enterococcus italicus DSM 15952]
 gi|315483840|gb|EFU74324.1| sensor histidine kinase [Enterococcus italicus DSM 15952]
          Length = 392

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILL 621
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S     +  +  YI A    + 
Sbjct: 152 RRIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDRQYRSEEDLLKYTHTAYIKAKQ--MK 209

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +LV+D+ +   V      L+  +  +  L+ ++      + ++  I I+ +++ +     
Sbjct: 210 SLVDDLFEYTKVRQPSNPLHVISFDMVQLIEQLAADFELEANKKGIAIQTVANPEQMMMD 269

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L+++FS +L+NA  +     T+I+   +   + + +VKNNG  IP+     +F+R
Sbjct: 270 GDTEKLVRVFSNLLTNAFKYGKNADTIIMSVEKVGTEAVITVKNNGKMIPKRSLDLLFDR 329

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           F  V  +   +  G GLGL+I +S + LHGG++  +S+ +
Sbjct: 330 FYRVEESRSQETGGTGLGLAIAQSIVALHGGYIYATSNPQ 369


>gi|300855685|ref|YP_003780669.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300435800|gb|ADK15567.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 508

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 135/278 (48%), Gaps = 25/278 (8%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           +DE  +L  TL  LS            N    LT VN      A   L +  E  R  D+
Sbjct: 243 EDEIGNLASTLNFLS-----------YNLDKALTSVNA-----ANEKLEKDIEKERNIDK 286

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +  F+  VS+EL++P+  I G+ + LK        S++ QY++ I   S  + NLV+D+
Sbjct: 287 ARKEFIAAVSHELKTPINLIGGYAEGLKDGIFQE--SERDQYIDIIIDESNKMANLVSDM 344

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQ 685
           L+L+ +++G MKL+     ++DL+  V +     + +  I I   +I+  K+    AD  
Sbjct: 345 LNLSHLESGTMKLSKEEFFIDDLIECVIRRFYKVIKDKGITINCNIITKTKI---CADWD 401

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           ++ Q+ +   +NA+  + +G  +      ++   I SV+N G  IPE+    ++  F   
Sbjct: 402 KMEQVITNFTTNAIKNTYEGGIITFAIEEESDKTIVSVENTGKGIPEEELGKIWGNFYKL 461

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
                R+  G G+GL+IV++ + LHG    + ++D G+
Sbjct: 462 DKSRNRKLGGTGIGLAIVKNILILHGYKYGVKNTDNGI 499


>gi|256829959|ref|YP_003158687.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579135|gb|ACU90271.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 705

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 120/244 (49%), Gaps = 13/244 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T   + E  L     A   A++ K++F+ ++S+E+R+PL  ++G   LL+T+     
Sbjct: 307 LDITPRKQMEVELVAAKNAAESANKAKSAFLANMSHEIRTPLNGLLGMMQLLETT---DT 363

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  Y+E    S   L  L++DILDL+ ++AG M L+     L++  + V  S     
Sbjct: 364 SDEQQMYIEMAIRSGGRLTRLLSDILDLSRIEAGRMPLSEEPFNLSETFSAVTDSFGPVS 423

Query: 663 HENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARD 715
            +    +RI V  D     F  D  R+ Q+   ++ NAM F+ +G      + +L    D
Sbjct: 424 IQKRLPVRIDVAPDVPKEVF-GDEVRVRQVLFNLVGNAMKFTDQGEVRIEVSTLLPLPPD 482

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               +F V + G+ + +   K++ N F   S     + +G GLGLSI +  +   GG ++
Sbjct: 483 TVRVLFCVTDTGAGMSDTTLKTLGNPFTQASEGFTREHQGAGLGLSICKRLVAAMGGTLT 542

Query: 774 ISSS 777
             S+
Sbjct: 543 FEST 546


>gi|2541938|gb|AAB81244.1| putative ethylene receptor [Dianthus caryophyllus]
 gi|2541968|gb|AAB82657.1| putative ethylene receptor [Dianthus caryophyllus]
          Length = 630

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 152/313 (48%), Gaps = 46/313 (14%)

Query: 500 FAA--IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           FAA  +I+  D  RK     LEL+   V +   + L +A T      V +SVRA+  L E
Sbjct: 272 FAAMVLISPSDAVRKFRDHDLELVK-VVADEVAVALSHAAT------VEESVRAQNQLME 324

Query: 558 KNEAL---RKADEI-----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQ 608
            N AL   R+  E+     +N F+  +++E+R+P+  II  + +L    LG+ L  +Q  
Sbjct: 325 HNVALDLARREAEMAIICARNEFLSVMNHEMRTPIHAIIALSSIL----LGTELTPEQRV 380

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E I  SS +L  L+ND+LDL+ ++ G ++L+     L+ +  EV   I        + 
Sbjct: 381 MLEIILKSSNLLSTLINDVLDLSRLEDGSLELDTVVFNLHGVFKEVLHLIKPIASVKKLS 440

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAAR------------ 714
           + ++   ++    V D +RLLQ    ++ NA+ F+ +G  +V    AR            
Sbjct: 441 LTLVLAPEMPVCAVGDEKRLLQTILNVVGNAVKFTKEGYVSVSASVARPESLTNWRGPEV 500

Query: 715 ----DNGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
                +G F     VK++G  I P+DM   +FN+F          G+GLGL+I + F+NL
Sbjct: 501 HPVLSDGYFYLKVQVKDSGCGINPQDM-PIIFNKF--TQFNQNTAGIGLGLAICKRFVNL 557

Query: 768 HGGHVSISSSDEG 780
            GG + I S   G
Sbjct: 558 MGGQIWIESDGHG 570


>gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1236

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D  + +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 577

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K ++++  FV +VS+EL++PLT+I GF + L       +   + Q++  I   S  + 
Sbjct: 347 IKKLEQMRKDFVANVSHELKTPLTSIKGFAETL-LDGAQDVPEIREQFLNIIHDESERMQ 405

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+L+L+ ++    +L  + + +  LL+E    +  K  E  + I + ++ ++  F+
Sbjct: 406 TLVEDLLELSRLEQDNYQLETTIVDVTSLLHETATLLQRKATEKQMTIHLETEEEV--FI 463

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  RL Q+   +++NA++++  G  V +         +  +K++G  I     + +F 
Sbjct: 464 RADLNRLKQVVVNLVANALNYTPNGGNVWISLEDGEEAVMLRIKDDGIGIHPKEMQRIFE 523

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF  V  A      G GLGL+IV+  I+LH G + + S +   TT   R+P K
Sbjct: 524 RFYRVDKARSRNSGGTGLGLAIVKHIIDLHHGTIDVESEENQGTTFTIRLPKK 576


>gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 974

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 22/254 (8%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKL 599
           T  +VT     ER L    EA      +K+ F+ ++S+E+R+PL  I+G T+L L+T   
Sbjct: 424 TVQDVTRQKLLERELVRAKEAAEAGSRVKSEFLANMSHEIRTPLNGILGMTELTLRT--- 480

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q +Y+  + AS+  L  LV DILD + ++AG ++L      L ++L    + + 
Sbjct: 481 -GLTREQREYLSMVKASADALATLVGDILDFSRIEAGKLELERKDFRLREILQAALKPME 539

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDN 716
            +     + + +  D  +   +  D  RL Q+   ++SNA+ F+  G   I  L  A  +
Sbjct: 540 MQAEAKGLHLTLRIDPAVPEHLHGDAGRLRQVLLNLVSNAIKFTPSGGIDIDVLPTATSH 599

Query: 717 G----------DFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVES 763
                      + +FSV + G  I   + + VF+ F    S+  R Q  G GLGL+I   
Sbjct: 600 TPSGQEPDHKFELLFSVADTGIGIDTQLQERVFDIFTQGDSSLSR-QYEGTGLGLAISRQ 658

Query: 764 FINLHGGHVSISSS 777
            + L GG + + S+
Sbjct: 659 LVELMGGAIWVESA 672


>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1320

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 13/230 (5%)

Query: 557 EKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           E + AL +A+   + K+ F+ ++S+E+R+P+  +IG T LL  +    L+ +Q +  E +
Sbjct: 649 ELDRALAQAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLDT---DLDPEQRRLAEIV 705

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL L+NDILD + ++AG ++L +    L  L+ EV + +A   HE ++ +    
Sbjct: 706 RDSGENLLALINDILDFSKIEAGKLELEHLEFDLRLLIEEVLEMMAFNAHEKDLELTYRI 765

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGS 728
             ++ + V  D + L Q+   ++ NA+ F+ +G     + L+ A      I F V ++G 
Sbjct: 766 APQVPTAVRGDPRYLRQVIVNLMGNAIKFTERGEVGLQLALERAEAGRALIRFEVHDSGI 825

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            IPED    +F  F        RR  G GLGL I +    L  G + + S
Sbjct: 826 GIPEDQLGKLFTAFNQVDSSTTRRFGGTGLGLVIAKQLAQLMNGDIGLES 875


>gi|186685420|ref|YP_001868616.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467872|gb|ACC83673.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1235

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 121/218 (55%), Gaps = 11/218 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  I+GFT ++  S+  SL+S+  + +  I+ +   LLNL+NDIL
Sbjct: 682 KSEFLANMSHELRTPLNAILGFTQVM--SQDYSLSSEHQENLAIINRAGEHLLNLINDIL 739

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           +++ ++AG + LN S+  L  LLN +++ +  +    ++++       +  ++  D  +L
Sbjct: 740 EMSKIEAGRITLNRSSFDLIHLLNNLEEMLYLRAASKSLQLVFEYAHDIPQYIETDENKL 799

Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFN 740
            Q+   +L NA+ F+  G  T+ L+  ++      N    F V++ G  I       +F 
Sbjct: 800 FQVLLNLLGNAIKFTDIGGVTLRLRWEQEEENLSYNPRLFFEVQDTGCGITPQEIGLLFE 859

Query: 741 RF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F  +   R  ++G GLGL+I   ++ L GG +++SS+
Sbjct: 860 AFEQTEIGRKSQQGTGLGLAISRKYVQLMGGDITVSST 897


>gi|182415386|ref|YP_001820452.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842600|gb|ACB76852.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 735

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 11/254 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + +++R +  L E+      A++ K+ F+  +S+ELR+PLT ++    +L+      L  
Sbjct: 330 IAEALRWQNELAERARETEAANQAKDHFLAMLSHELRTPLTPVLAAAGVLEHDD--RLPQ 387

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              + +  I  +  I   LV+D+LDL  ++ G ++     + +  LL+E    +A  +  
Sbjct: 388 DVREDLRMIRRNIGIQSRLVDDLLDLTKLERGKLEFEPQVLDIAALLHETALIVAPDLDA 447

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFI 720
            + +I++      G  V  D  RL Q+F  +L NA  FS   + + L+  R  G     I
Sbjct: 448 KDQQIEMDLFAAEGQRVEGDGPRLQQVFWNLLKNANKFSPAKTRIALRTRRAEGAPARLI 507

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISS 776
             V + G  I       +F  F   A  G+RR    G+GLGLSI  + ++LHGG ++++S
Sbjct: 508 VDVVDKGMGIDPTHLDRIFRPFEQVATNGKRRSGESGLGLGLSIARAIVDLHGGKIAVAS 567

Query: 777 SDEGV-TTINCRIP 789
              G   T +  +P
Sbjct: 568 EGLGCGATFSVELP 581


>gi|78222974|ref|YP_384721.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78194229|gb|ABB31996.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 462

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 12/236 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L     +   A   K   +  VS+E+RS +  + G  +LL+ +    L+ KQ++Y+ 
Sbjct: 72  ERDLKRAKVSAEAACHSKEDLLALVSHEIRSQIQMLTGAVELLRET---PLDKKQTEYLN 128

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + +   LL+LVND+LD + +DAG + L+       +LL    Q IA +     + ++ 
Sbjct: 129 AFNHAGEFLLSLVNDLLDNSRLDAGRIHLDQIEFPFRELLERTAQLIAWQAGRKGLELEY 188

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVK 724
            +S       V D +RL Q+   +  NA+ F+ +G  +I         A      IF+++
Sbjct: 189 HLSPDIPAQLVGDPKRLQQVILNLAGNAIKFTEQGKIIITVEPEASSLASQEMQLIFTIQ 248

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           + G  IP D  + +F R+   +    R   G GLGL+I +  + L GG + ++S +
Sbjct: 249 DTGIGIPGDKLEEIFERYAQASPATFRTYGGTGLGLNIAKRLVGLMGGTIRVTSKE 304


>gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella
           oneidensis MR-1]
 gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella
           oneidensis MR-1]
          Length = 1188

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 646 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 702

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 703 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 762

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 763 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 820

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D  + +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 821 DHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 880

Query: 772 VSISS 776
           + + S
Sbjct: 881 MQVQS 885


>gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437]
          Length = 595

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 7/234 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K D  +  FV +VS+ELR+PLT I  + + L     G++   +  S+++      +  + 
Sbjct: 358 KLDRQRKEFVANVSHELRTPLTTIKSYLEALDEG--GAMEEPELASRFMRVTRQEAERMT 415

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+L L+ +DA  ++   + + L  +L +     A +  +  I  ++  +  L    
Sbjct: 416 RLIHDLLQLSRLDAEKVRFRKAPLPLESVLVDAADRFAFQCRQKEIDFQLSLEEDLPRVY 475

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
           ADR ++ Q+   +LSNA+ ++ +G  + L A + +  ++  +V + G  IP+   + +F 
Sbjct: 476 ADRDQIDQVLDNLLSNAVKYTPEGKKISLTARKCSDGYVEVAVADRGIGIPKKDLERIFE 535

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF  V  A      G GLGLSI    +  HGG + + S+    TT+   +P  E
Sbjct: 536 RFYRVDKARSRSLGGTGLGLSIAREIVRAHGGSIQLESNYGKGTTVRFTLPPCE 589


>gi|322806796|emb|CBZ04365.1| phosphate regulon sensor protein PhoR (SphS) [Clostridium botulinum
           H04402 065]
          Length = 522

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF++ LK          + ++++ I+  +  L 
Sbjct: 293 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 349

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL L+ ++    +L    I LN+L+ +V   +     + NIRI ++ + K+   +
Sbjct: 350 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLI 408

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            ++ +  Q+   ++ NA+ ++     V +   +D G+ +F V++ G  I E+    +F R
Sbjct: 409 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFER 468

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +    G + + S  +  T    +IP
Sbjct: 469 FYRVDKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSQPKKGTKFIVKIP 518


>gi|307825601|ref|ZP_07655819.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
 gi|307733487|gb|EFO04346.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
          Length = 1640

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 118/220 (53%), Gaps = 12/220 (5%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A ++K++F+ ++S+E+R+P+  I+G T L+    L  L +KQ  Y+  I++S+  LL ++
Sbjct: 858  AVQVKSAFLANMSHEIRTPMNAIMGMTHLVL---LTDLTAKQRNYLYKINSSAKWLLGIL 914

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            NDILD + ++AG +KL Y+   L  ++  +    ++ ++   + ++   D  +  + + D
Sbjct: 915  NDILDFSKLEAGKLKLEYTEFRLETVMQYLDDVTSSLLNSKQLALRFEVDPDVPTTLIGD 974

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
              RL Q+   +LSNA+ F+ KGS V L+      D       FSV + G  + E+    +
Sbjct: 975  PLRLGQVLLNLLSNAIKFTEKGS-VTLQVQLQASDAKEACLCFSVIDTGIGLNEEQQSHL 1033

Query: 739  FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F  F        R+  G GLGLSI +  +   GG ++I S
Sbjct: 1034 FAAFNQADDSTTRKYGGTGLGLSISKELVEAMGGTINIES 1073


>gi|302544743|ref|ZP_07297085.1| LOW QUALITY PROTEIN: signal transduction histidine-protein kinase
           afsQ2 [Streptomyces hygroscopicus ATCC 53653]
 gi|302462361|gb|EFL25454.1| LOW QUALITY PROTEIN: signal transduction histidine-protein kinase
           afsQ2 [Streptomyces himastatinicus ATCC 53653]
          Length = 339

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 14/243 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L ++   L   +     FV  +S+ELR+PLT I   T++L+  +  +L+   +  
Sbjct: 69  RAAERLQKRVAELSAREASSRRFVADMSHELRTPLTAITAVTEVLE-EEADALDPMIAPA 127

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ + + +  L +LV +++++   DAG  +L    +   D+ ++V   I  +   + + +
Sbjct: 128 VQLVVSETRRLNDLVENLMEVTRFDAGTARLVLDDV---DVADQVTACIDARAWLDAVEL 184

Query: 670 KVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
               D   G  VA  D +RL  I + ++ NA+     GS V +    +  D +  V+++G
Sbjct: 185 ----DAARG-IVARLDPRRLDVILANLIGNALKHG--GSPVRVSVLPEGEDLLIKVRDHG 237

Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             IPED+   VF+RF  ++A R +  G GLGLSI     ++HGG +S ++S EG      
Sbjct: 238 PGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAMENAHIHGGDISAANSPEGGAVFTL 297

Query: 787 RIP 789
           R+P
Sbjct: 298 RLP 300


>gi|298385742|ref|ZP_06995300.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
 gi|298261883|gb|EFI04749.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
          Length = 499

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++       +++ +V 
Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-MHENNIRIK 670
            IS +S  L+ L++D+LDL+ +++  +K  ++   L  L+ ++++  A K + E  IR  
Sbjct: 316 LISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLQSLMMDIEKEQAMKPISEIEIRAS 375

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI-FSVKNNGS 728
             ++    +   D  RL Q+    ++NA  F+ KG      A    N D +   V++ GS
Sbjct: 376 FPNEDVYIN--TDATRLKQVVCNFINNARKFTEKGYIHFGYAVDPVNADSVNIFVEDTGS 433

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IP++  K +F+RF       Q  G GLGLSI ++ +    G +S+ S
Sbjct: 434 GIPQECQKEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDISVES 479


>gi|251794821|ref|YP_003009552.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247542447|gb|ACS99465.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 460

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 122/231 (52%), Gaps = 7/231 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +L + + ++  FV +VS+E++SPLT+I GF + L++  L      +++YV  I   S+ L
Sbjct: 228 SLSQLETMRRDFVSNVSHEIQSPLTSIGGFAEALRSEDL--TEGDRNRYVGIIKQESSRL 285

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L  ++L LA++D+        T  L+  L +V  S         + ++++ +  +   
Sbjct: 286 SRLSENLLKLASLDSEHHPYKPVTYRLDRQLRDVVLSCEPTWLAKRLTVELLMEETV--I 343

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  +L Q++  +L+N++ F+ +   +  + +  NG  +  + + GS IPE+    VF 
Sbjct: 344 KADEDQLSQVWINLLTNSIKFTPEEGKISFQLSEKNGYAVVRISDTGSGIPEEERDRVFE 403

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  +  +      G GLGLSIV+  I++HGG + I  +++G   +  R+P
Sbjct: 404 RFYKIDPSRDRSEGGSGLGLSIVKKIIDIHGGTIEIEDAEQGAVFV-VRLP 453


>gi|88801182|ref|ZP_01116725.1| GGDEF family protein [Reinekea sp. MED297]
 gi|88776085|gb|EAR07317.1| GGDEF family protein [Reinekea sp. MED297]
          Length = 773

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 13/246 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           + AE ALT  + A+R     K  F+ +VS+ELR+PL  I G  DLL  S   S +    +
Sbjct: 388 IAAEEALTIADNAVRA----KERFLANVSHELRTPLNAIQGSVDLLSHS---SQDESLKE 440

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I  SS+ LL L+NDILDLA ++A ++ ++     L+  + ++  SI +    NN +
Sbjct: 441 PIDMIQHSSSFLLFLINDILDLAKLNADMLTIDEQPFNLHGSIQQIC-SIYSNSLANNAQ 499

Query: 669 IK---VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +    IS       V D +RL Q+ + +LSNA  F+ KG        +D    + SV++
Sbjct: 500 TRFELTISPDVPTWIVGDEKRLEQVIANLLSNAFKFTEKGKVTCRLTLKDTHTLMISVQD 559

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  D   ++F  F        R+  G GLGL I    I   GG +   S     +T
Sbjct: 560 TGIGIKPDNLDAMFAAFTQADSSISRKYGGTGLGLRISSKIIEQMGGEIWAESETGQGST 619

Query: 784 INCRIP 789
               +P
Sbjct: 620 FTFTLP 625


>gi|148545406|ref|YP_001265508.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida F1]
 gi|148509464|gb|ABQ76324.1| Alginate biosynthesis sensor protein KinB [Pseudomonas putida F1]
          Length = 593

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + Q  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 339 LLTYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 388

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+        ++++  +E I      L  L+ND+L+ +   +G+ KL  +
Sbjct: 389 VTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 448

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              ++DLL   +   A       I +    D  L    AD  +L ++   +L NA+  ++
Sbjct: 449 PCAIDDLLEHAQLRFAEHAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTA 508

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
            G  + L A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 509 NGGRIRLHARRHAERVIISVEDNGEGISYGQQARIFEPFVQVGRK--KGGAGLGLALCKE 566

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 567 IVQLHGGRMGVFSRPGQGTQFYMALP 592


>gi|239994497|ref|ZP_04715021.1| putative sensor protein [Alteromonas macleodii ATCC 27126]
          Length = 1023

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V   + L E  +  RKA  +K+SF+ ++S+E+R+PL  ++G   LLK      LN K  Q
Sbjct: 494 VSRTKELVEATQEARKASSVKSSFISNISHEMRTPLNGVVGSLSLLKCQP---LNEKAEQ 550

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  +  S   L  L+ND+LDL+ ++AG + +N        L+  + +  A K     ++
Sbjct: 551 LVSMMEISCNNLSVLINDVLDLSKIEAGKLDINNQYFDPLALIESIAKVFAVKAASKGLQ 610

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFS 722
           + V + G     + +D  R+ QI S +L+NA+ F+ +G  + L+A+  + D       FS
Sbjct: 611 LLVDTTGLPPVEINSDPHRINQILSNLLNNAIKFTEEGH-IKLQASLSDVDAGTQQLHFS 669

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V + G  I ++    +F  F     +   Q  G GLGLSI +    L GG ++ +S
Sbjct: 670 VCDTGVGIAQENQPKLFTAFTQADASVATQYGGTGLGLSICKQLSQLMGGDITFNS 725


>gi|255307672|ref|ZP_05351843.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
 gi|306520996|ref|ZP_07407343.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 441

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 36/343 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +S G+     +G I L N   + + K+E N+L  G +I  +         E +       
Sbjct: 95  ISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK-------EEEILKQILQ 147

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEK 558
            I S D+E  ++        D V +  + P  L N   ++  + VN+ D       +T+K
Sbjct: 148 FIGSKDNETANITTK----DDIVYKIKVDPVYLQNTNNVIIGSIVNIED-------ITKK 196

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++ ++++E I + S 
Sbjct: 197 ----VKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR-NRFLEIIESESD 251

Query: 619 ILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            L  L++DIL L+ V   D  +M+     +V+ D+  EV +       E NI +    D 
Sbjct: 252 RLKRLIDDILLLSFVENKDTLLME----NVVVYDVFKEVYEITQHSASEKNIEVLYKCDD 307

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +NG  IP++  
Sbjct: 308 KSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGIPKEDV 367

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +F RF  V  A      G GLGL+I +  +    G + + S
Sbjct: 368 ERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKS 410


>gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1492

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 10/228 (4%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+E+R+P+  I+G + LL+ +    LN +Q   +E +  +   LL L+ND+L
Sbjct: 1115 KSEFLANMSHEIRTPMNLILGTSQLLERT---GLNERQQNLLEVLQRNGQTLLTLINDVL 1171

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            DL+ ++A  + ++     L  LL     + A    E  + I +  D  L + V  D  RL
Sbjct: 1172 DLSKLEAQELHIDCKPFDLGTLLKTTFANFAPSAEEKGLSITLEVDSTLPTLVIGDSFRL 1231

Query: 688  LQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             QI   +L NA+ F++KGS  +    ++ A++     FSV + G  I  D  +++F  F+
Sbjct: 1232 QQILHNLLGNAVKFTAKGSIQLRSQRIQRAKNKVTVRFSVTDTGVGIHPDAQENLFEPFI 1291

Query: 744  S--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               N+   Q  G GLGL+I    + L  G + + S     +T    +P
Sbjct: 1292 QADNSSTRQYGGTGLGLTICRRIVELMRGEIGVESQPNQGSTFWFVVP 1339


>gi|254409964|ref|ZP_05023744.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183000|gb|EDX77984.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1946

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 30/251 (11%)

Query: 553  RALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            + L E+N A+ KA +I       K+ F+  +S+E+R+P+  +IG T LL  ++L   + +
Sbjct: 1233 QQLAEQNVAMEKAKQIAEAANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTQL---SHE 1289

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q+++ E I  S   LL ++NDILD + +++G ++L      L   + E    +  K  E 
Sbjct: 1290 QAEFAETIRNSGEALLTIINDILDFSKIESGKLELEEQPFNLRTCIEESLDLLTPKAAEK 1349

Query: 666  NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR--------- 714
             I +  + D    + +  D  RL QI   +LSNA+ F+ +G  TV + + R         
Sbjct: 1350 AIELAYLFDPHTPNTIRGDITRLRQILVNLLSNALKFTHQGEVTVSVSSKRVSPQSLEQL 1409

Query: 715  -------DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
                      + +F+VK+ G  IP D    +F  F  V ++      G GLGL I +   
Sbjct: 1410 SHRTNKEQQYEILFAVKDTGIGIPPDRLDRLFKAFSQVDSSTSRHYGGTGLGLVISKRLS 1469

Query: 766  NLHGGHVSISS 776
             + GG + + S
Sbjct: 1470 EMMGGRIWVES 1480


>gi|121997909|ref|YP_001002696.1| GAF sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
 gi|121589314|gb|ABM61894.1| GAF sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
          Length = 437

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 122/251 (48%), Gaps = 14/251 (5%)

Query: 547 DSVRAERA----------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +  RAER+          L +  E   + +  K+ F+  +S+ELR+PL  ++GF  +L+ 
Sbjct: 170 ERARAERSAIELRRINLELQQAREEAERGNRAKSQFLSSMSHELRTPLNAVLGFAQILEQ 229

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+ +Q+ YV+ I      LL+L++DILDL+ V+AG ++L    +    L+++  +
Sbjct: 230 DPREPLSERQAGYVDQILGGGRHLLSLIDDILDLSRVEAGRVELKPEWVAPGLLVDQCAE 289

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +     +  + + V +++    S   D +R+ Q+   + SNA+ ++     V ++    
Sbjct: 290 LLGPMATDAGVHLSVYVAEAVPASIWVDPRRIRQVLFNLASNAVKYNRPDGRVEVEVEAP 349

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             D I F V++ G  I E+  + VF  F        +  G G+GL +    +   GG + 
Sbjct: 350 APDRIRFRVRDTGIGIREERQREVFYPFNRLGLESSEVEGTGIGLVVTRRLVEQMGGEIG 409

Query: 774 ISSSDEGVTTI 784
            SS+  GV ++
Sbjct: 410 FSSAP-GVGSV 419


>gi|298246973|ref|ZP_06970778.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549632|gb|EFH83498.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 796

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 5/235 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+ELR PLT +   T LL+           +  +  +     
Sbjct: 563 NSARKELEQRKDDFISMASHELRGPLTALKLQTTLLRRQLAKQGTQASAPALSSMETQIN 622

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  LV ++LD++ + AG ++    T+ L+ LL E+ +++      + + ++    G  G
Sbjct: 623 KVTRLVEELLDVSKIQAGRLEYVQETVDLDALLREITETLQQSSPSHTLVVR--GTGGTG 680

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             + DR RL Q+F+ ++SNA+ +S    TV +  +         V ++G  IP +    +
Sbjct: 681 -LIGDRDRLGQVFTNLISNAIKYSPNAETVEMDLSASEDAVTVCVCDHGLGIPREQRDKI 739

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF  VS  ++    G+G+GL IV   +  HGG +++ S     +T    +P K
Sbjct: 740 FERFYRVSGPNQKAIPGLGMGLYIVAEIVRHHGGSITVESEVGKGSTFQVTLPMK 794


>gi|298290965|ref|YP_003692904.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296927476|gb|ADH88285.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 833

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 120/254 (47%), Gaps = 30/254 (11%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L+   +   +A + K+ F+  VS+ELR+PLT I+G T LL+T+   SL S Q + +E 
Sbjct: 180 RKLSAATKVAEEASQAKSLFLASVSHELRTPLTAIVGMTGLLRTT---SLASDQREMIET 236

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IK 670
           +  ++  L +L++ +LDL+ ++AG M +      L  LL + ++ +  +  E  +   I 
Sbjct: 237 VEVATRSLRSLIDGLLDLSRIEAGRMPVPNEPFDLVALLLDARRLVEGQARERGLSFDIH 296

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNN 726
           V     LG  V  RQ L +    ++ NA+ F+ +G   +   A    D     +  V + 
Sbjct: 297 VTPRTPLG-LVGSRQHLHEALVNLVGNAVKFTQQGGVTLAVDAEPAEDGRLSLVIEVSDT 355

Query: 727 GSSI-PEDMCK----------SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           G  I P D  +          S+ NRF          G GLGL+I    + L GG +S+ 
Sbjct: 356 GIGIAPGDQERIFEDFTQADASILNRF---------GGTGLGLAITRRLVALMGGTISVD 406

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    +P
Sbjct: 407 SAPGKGSTFRFHVP 420


>gi|257059969|ref|YP_003137857.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
 gi|256590135|gb|ACV01022.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
          Length = 576

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 16/252 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +   + +Q +++E 
Sbjct: 317 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLRLV-LDGMADDSQEQQEFLEE 375

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILD+A ++AG M L   ++ L +L   +      +     +     
Sbjct: 376 AHKSALHLLNLINDILDIAKIEAGKMDLEVGSVELAELFEAIDNFTLPQAQRKRLNYSSK 435

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKG----STVILKAA---RDN---GDFI 720
               L   V   + QRLLQ+   ++SNA+ F+  G    +  I+K     RD    G   
Sbjct: 436 YPPTLTPIVLYGNYQRLLQVMLNLVSNAIKFTHDGGIDITAEIVKKKLYWRDREFPGMIK 495

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  +  +    +F +FV    +H     G GLGL+I +  +   GG V   S  
Sbjct: 496 VRVSDTGIGVALEKQAKLFEKFVQVDGSHSKAYGGTGLGLAISQKLVEAMGGQVEFYSMG 555

Query: 779 EGV-TTINCRIP 789
           EG+ +T+   +P
Sbjct: 556 EGLGSTVTFTVP 567


>gi|153005312|ref|YP_001379637.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028885|gb|ABS26653.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 459

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ FV  VS+ELR+PL  ++G+  LL+  KL +  +  S+ +E I  S+     +V+D+L
Sbjct: 86  KDEFVATVSHELRTPLNAVLGWARLLRLGKLDA--AAASRGIETIERSAQAQAQIVDDLL 143

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D + +  G ++L+   + L  ++    +++       +I +  +   + G    D  RL 
Sbjct: 144 DFSRIVRGQLRLDVRPVELVPVVEAALEAVRPAAAARSISVAAVLVPRAGPVAGDPGRLQ 203

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   +LSNA+ F+  G  V ++ AR+  +    V++ G+ I ED    +F RF      
Sbjct: 204 QVVWNLLSNAIKFTPPGGRVEVRLAREGDEVTIRVRDTGAGIAEDFLPHLFERFRQADSS 263

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
             R   G+GLGL++V   +  HGG VS +S   G       R+P
Sbjct: 264 STRVHGGLGLGLALVRHLVEAHGGAVSATSDGPGRGAAFTVRLP 307


>gi|154250164|ref|YP_001410989.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154154100|gb|ABS61332.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 422

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 160/354 (45%), Gaps = 39/354 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++++++ + +   DG I  +N A R + +       PG   R +      Y+      ++
Sbjct: 80  LNNITDPIIIVRGDGVITFANIAGRDITR-------PGIEGRKVYDVVENYFL----LEM 128

Query: 500 FAAIITSFDDERKSLQ-GTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSVRAERAL 555
           F   +     E   +Q G + + ++    Y    ++P+   Q    ++ V      E+ L
Sbjct: 129 FEKAL-----ETGEIQSGDVVMQTNGETRYYDAKVVPIKFDQESERYIIVLHDTTKEKQL 183

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+++  F+ +VS+ELR+PLT+I G+ + L    L +      +++  I +
Sbjct: 184 ----------DKLRREFISNVSHELRTPLTSIHGYAEALLDDDLSN-KELVRKFLGVIES 232

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  L+ND+LDL  +++G  K N+S + +  ++  V   +     +  + +    + 
Sbjct: 233 ESARMTRLINDLLDLEKLESGDAKFNFSDVNMCKVIERVVTILEPLAEDYGVELYTKCEC 292

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIP 731
           K  +   D  RL+Q+   ++ NA+ ++S   T    V +K        +F V++ G  IP
Sbjct: 293 K-STVYGDFDRLVQLVLNLVDNAVKYTSIKETGEKKVFVKCYGKEDKLVFEVQDTGPGIP 351

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           ED  K +F RF  V  A   +  G GLGLSIV+   + H   +S  S   EG T
Sbjct: 352 EDAQKRLFERFYRVDKARSRKVGGTGLGLSIVKMIADKHNATISFESKVGEGTT 405


>gi|323698979|ref|ZP_08110891.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio sp.
           ND132]
 gi|323458911|gb|EGB14776.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 672

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 117/220 (53%), Gaps = 10/220 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A   A+  K+SF+  +S+E+R+P+  I+G  D+L  ++L   +  Q++YV+    +   
Sbjct: 280 QAAEVANAAKSSFLASMSHEIRTPMNAILGMADILWETEL---SEDQARYVDVFRTAGEN 336

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL +++DILDL+ ++AG + L  +   L ++L+     I TK  +  + +  ++  ++ +
Sbjct: 337 LLEILDDILDLSKIEAGHLTLEKTWFPLTEILDRTCGVIQTKASKKGLGLSCVAAPEVPA 396

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSIPEDM 734
            +  D  RL Q+   +L NA+ F+  GS    +  A+RD+   +  FS+ + G  +  D 
Sbjct: 397 RINGDPTRLRQVLFNLLGNAIKFTDAGSVAMNVDIASRDDEGVVLHFSITDTGVGVSGDK 456

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
             ++F  F        R+  G GLGL+I +  + + GG +
Sbjct: 457 LGAIFEAFTQADSSTTRQFGGTGLGLAISKELVQMMGGRI 496


>gi|289663371|ref|ZP_06484952.1| RpfC [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 722

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 17/231 (7%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ALT      R A+E K+ F+ ++S+E R+PL  + G  +LL  +KL   +++QS+Y++ I
Sbjct: 175 ALTRALNDARHANEAKSKFLANMSHEFRTPLNGLSGTAELLAVTKL---DAEQSEYLKTI 231

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKV 671
            AS+  L +LV ++LD++ ++AG ++L  +  +L  LL+ V   +  +     I  +++V
Sbjct: 232 QASALNLRSLVEEVLDISAIEAGKVRLIRTHFLLASLLDSVALILRPQATNKGIGYQVEV 291

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFI---FSVKN 725
            +D    + V D   L Q+   ++ NA+ F+ +GS V LK +R     GD I   F V++
Sbjct: 292 AADVP-ANLVGDAGHLSQVLLNLIGNAVKFTDEGS-VDLKVSRVASLPGDRICVRFEVRD 349

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
            G  +P  M   VF+ F      G  R   G GLG +I +  +   GG + 
Sbjct: 350 TGIGVPVAMQSRVFDAF-QQGDMGLNRHYEGTGLGTTIAKGLVESMGGRIG 399


>gi|239787730|emb|CAX84245.1| Sensor protein [uncultured bacterium]
          Length = 992

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 119/253 (47%), Gaps = 16/253 (6%)

Query: 537 QTMLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           Q  L F +V   +   R E  L    E    ++  K  F+  +S+E+R+P+  ++G  DL
Sbjct: 412 QLQLIFQDVEKFIERRRWEEKLQLAKEEAEASNRAKTDFLAAMSHEIRTPMNGVLGMADL 471

Query: 594 -LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L+T     L  +Q  YVE I  S   LL ++NDILD++ + AG + L      L +++ 
Sbjct: 472 VLRTP----LTDQQRHYVETIHRSGRTLLRIINDILDISKIHAGHLALELLQFDLAEVVQ 527

Query: 653 EVKQSIATKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---- 706
           +V    A ++    +   I+   +G     + D  RL QI   +L NA+ F+ +GS    
Sbjct: 528 DVIDMFAERVKTKGLTFAIEFPEEGMPVHLLGDPYRLSQILFNLLGNAIKFTERGSIGLF 587

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
             +L+    +    F V + G  I  D C+ +F  F        R+  G GLGL+I +  
Sbjct: 588 VEVLEERAWDVLLRFKVTDTGIGISPDYCQRLFQAFTQEDLSITRKFGGTGLGLAITQKL 647

Query: 765 INLHGGHVSISSS 777
           + +  G +++ S+
Sbjct: 648 VGMMAGELTVEST 660


>gi|225159367|ref|ZP_03725663.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224802028|gb|EEG20304.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 678

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 122/243 (50%), Gaps = 10/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           + V++T+  R E+ L    +    A  +K+ F+ ++S+E+R+P+  IIG + LL  ++  
Sbjct: 21  SVVDITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGIIGMSGLLLDTR-- 78

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++ E +  S+  LL ++NDILD + +++G + ++     L  ++ +    +  
Sbjct: 79  -LSPEQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFDLRTVVEDTLALLGE 137

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNG 717
           +  +  I +      G   +   D  R+ QI + ++ NA+ F+ +G  S  + +    N 
Sbjct: 138 RAIDKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTERGEVSVTVTRIQETNT 197

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              F  SV++ G  + +D+   +F  FV       R+  G GLGL+I    I + GG + 
Sbjct: 198 TLHFRISVRDTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLAISRQLIEMMGGRIG 257

Query: 774 ISS 776
            ++
Sbjct: 258 FTT 260


>gi|332992814|gb|AEF02869.1| putative two-component member protein [Alteromonas sp. SN2]
          Length = 1109

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 126/226 (55%), Gaps = 17/226 (7%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  IIGF+DL+   K   ++ +Q  ++  ++ S+  LL+L+NDILD A
Sbjct: 538 FLANMSHEIRTPMNAIIGFSDLMLAEK---MSPEQHGHLTTVNRSARSLLHLLNDILDSA 594

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR-----QR 686
            +D G + L+Y   ++ + ++ V  +   +     I ++V    ++GS V +      +R
Sbjct: 595 KLDKGKLDLDYRDFIIREEVDTVISTFWLEAKSKRISLEV----QVGSEVREAYNGVPER 650

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + Q+ + ++ NA+ F+  GS V+L+ + D+    F VK++G  +  +    VF+ F    
Sbjct: 651 IRQVLNNLIGNAVKFTGDGS-VVLEVSSDSSFVYFKVKDSGIGMNSEQVNRVFDAFAQAD 709

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
               R+  G GLG +I +  + L GG++  + S+ GV +T   R+P
Sbjct: 710 ASMSRKYGGTGLGTTISKQLVELMGGNIC-AQSELGVGSTFTFRLP 754


>gi|261200755|ref|XP_002626778.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239593850|gb|EEQ76431.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239607275|gb|EEQ84262.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ER-3]
          Length = 2346

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 15/229 (6%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+ +VS++LR+P+  +IG ++LLK +   SL+ +Q  YVE I   +  LL L+
Sbjct: 1835 AAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---SLDREQDGYVESIRVCADTLLTLI 1891

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF--VA 682
            NDILD + ++AG MK++   + L + + EV +++     +  ++     DG   +   + 
Sbjct: 1892 NDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPNLLVMG 1951

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
            D  RL QIF  +LSN+  F+ KGS  +     D  +        V + G  I  +    +
Sbjct: 1952 DPVRLHQIFMNLLSNSYKFTPKGSVTVKAKVTDEDEGRIRITCKVADTGIGISGEQLVRL 2011

Query: 739  FNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTT 783
            F  F S A     R   G GLGLSI ++ I ++ GG + +  S+EGV T
Sbjct: 2012 FRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWL-QSEEGVGT 2058


>gi|254475552|ref|ZP_05088938.1| conserved hypothetical protein [Ruegeria sp. R11]
 gi|214029795|gb|EEB70630.1| conserved hypothetical protein [Ruegeria sp. R11]
          Length = 519

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 149/345 (43%), Gaps = 15/345 (4%)

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
           + VW +   G + W+N++Y         + QK  G +   F E +   +    A  K   
Sbjct: 162 YPVWLQSDDGAVTWSNLAYDD-------LSQKIRGRNVD-FSEPLFTDLDDPMASGKPER 213

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAI 319
            ++   +      Y I       G    A+DV+     EI   + +    +    L++ +
Sbjct: 214 ISIPLPDSKKKLWYNISTTETESGWLCHAVDVNAVVDAEIAQRNFVQTLAKTFAQLSIGL 273

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD+NR L   N   ++L  +   FL++ P+     + LR    +PE  N+ +W+  + 
Sbjct: 274 AIFDRNRQLVLFNPVLIDLTALPANFLSSRPNMMTFFDRLRDQRMMPEPKNYSSWRHQMA 333

Query: 380 SVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
            + +++    +++TW LP+G    V    +P G   ++FE++T ++ L  ++ + +++  
Sbjct: 334 DLLEAASEGRYQETWSLPSGSVYSVSGRPHPDGAIAFLFEDITAEITLTRQFRSELEMGQ 393

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             +D + + +AVF  DG +  SN A+  LW+ + +       I + +         +  W
Sbjct: 394 SIMDQMDDAIAVFANDGSMTFSNAAYHELWQMDPDASFAKVTIMDSSRVWQNMCAATPAW 453

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                 +    D R      ++L + + L   +  + N  TM++F
Sbjct: 454 GEIRDFVAG-GDGRTPWWANVQLRNGTPLVCKVSAIQNGATMVSF 497


>gi|254445827|ref|ZP_05059303.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260135|gb|EDY84443.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 567

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 121/246 (49%), Gaps = 20/246 (8%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  +   + K+ F+ ++S+E+R+P+  +IGF DLL  +KL   + +Q +Y+E I+ S  +
Sbjct: 165 EYAKAESDAKSDFLANMSHEIRTPMNAVIGFCDLLSNTKL---DEEQEEYLEAINHSGQL 221

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV----ISDG 675
           L+ L+  +LD + +++G + L    +  + +L EV+  +  ++ E +I   V    +SD 
Sbjct: 222 LIKLIGQVLDYSKIESGHLHLESEELSFDQILLEVQAMMGVRLKETDIEFVVEKENLSDE 281

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVK--NNGSSI 730
            L   V D  R+ Q+   +L NA  F+  GS V+   + D+   G     V+  + G  I
Sbjct: 282 LL---VGDTTRVKQVLINLLGNAFKFTRDGSIVLKARSFDSHHLGHLCLQVRVEDTGIGI 338

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG---VTTIN 785
             D  +S+F  F     R  R   G GLGL+I +       G V + S+  G   V    
Sbjct: 339 RADRLRSLFCPFAQAHMRIAREFGGSGLGLAICKRLCEAMHGDVWVESTKPGKGSVFVFE 398

Query: 786 CRIPSK 791
             +P K
Sbjct: 399 IHLPKK 404


>gi|323139543|ref|ZP_08074589.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395222|gb|EFX97777.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 523

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 170/379 (44%), Gaps = 50/379 (13%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSL---------------WKTEENRLSPGTHIRN 482
           + +DHL   V     +GR+   N A + L               WK      S   H   
Sbjct: 27  QIMDHLPTAVYAVDTEGRLIYFNEAAKELSGREPEIGVDRWCVSWKLYRTDGSILPHDEC 86

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
             A   R + +  G +   AI+   D  R  ++  +ELL D++   ++I   N       
Sbjct: 87  PVAVTLREHRKISGVE---AIVERPDGSRVWIEPHIELLFDAL--GNVIGAVN-----VL 136

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI--------IGFTDLL 594
           +++T+  R+E  L +       AD  K+ F+  +++ELR+PL  I        +     L
Sbjct: 137 IDITERKRSENLLLD-------ADRRKDDFLALLAHELRNPLAPIHNAINVLMLEIATPL 189

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K  +  +L S   + V++       L+ LV+D+LD++ +  G + L    I L D  +  
Sbjct: 190 KVERGMALLSMADRQVKH-------LIRLVDDLLDVSRITKGKIVLEKIKINLADAFHHA 242

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +    ++      ++V    +      D  R+ Q+F+ +L+NA  F+ +   + L+A R
Sbjct: 243 IEMARPEIERGGHELRVQLPPEALEIEGDTVRIAQVFTNLLNNAAKFTKQPDILYLQAER 302

Query: 715 DNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            + + I +V++NG  I PE++ K +F  F       Q RG+G+GL++V S + +HGG V+
Sbjct: 303 RDAEVIVAVRDNGVGIAPENLTK-IFEAFAQIDTGHQSRGLGIGLALVRSLVEMHGGTVA 361

Query: 774 ISSSD-EGVTTINCRIPSK 791
             S   +  +T   R+P K
Sbjct: 362 AHSGGYQKGSTFVVRLPLK 380


>gi|291543616|emb|CBL16725.1| Signal transduction histidine kinase [Ruminococcus sp. 18P13]
          Length = 482

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 14/255 (5%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LT++ +T    A+    + NE  RK      SFV +VS+ELR+P+T I GF D +     
Sbjct: 227 LTYLAMTMGRMAD--FIDSNEKNRK------SFVSNVSHELRTPMTTISGFVDGILD--- 275

Query: 600 GSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           G++  +Q Q Y+  IS     L  LV+ +L+++  + G M+L    + L  LL       
Sbjct: 276 GTIPPEQQQGYLRRISGEVKRLSRLVSSMLNISKFEEGGMELKLVPVELTGLLISTLFMF 335

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K+    I++  + D       AD+  + Q+F  ++ NA+ F+ +   +          
Sbjct: 336 EQKIEARQIQVCGLEDCPRAEVQADKDLMQQVFYNLIENAVKFTPRNGELTFSVMPQGEQ 395

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               ++N G  + E+   +VFNRF     +      GVGLGLSIV   I LH G++ + S
Sbjct: 396 CQVVIRNTGEGLSEEELSNVFNRFYKTDESRSKDTTGVGLGLSIVSRIIRLHNGNIMVKS 455

Query: 777 SDEGVTTINCRIPSK 791
                T     +P K
Sbjct: 456 VKGDYTEFVITLPVK 470


>gi|261253840|ref|ZP_05946413.1| aerobic respiration control sensor protein ArcB [Vibrio orientalis
           CIP 102891]
 gi|260937231|gb|EEX93220.1| aerobic respiration control sensor protein ArcB [Vibrio orientalis
           CIP 102891]
          Length = 783

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 130/251 (51%), Gaps = 19/251 (7%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   +  +Q  +
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---MTQEQRSH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  S +   + + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELFPSALNFEEFVAEMESISALMASQKGLRF 380

Query: 670 KV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVK 724
            +  +SD   G  V D  RL Q+   ++SNAM F+ +G  V+  ++    ++   I  ++
Sbjct: 381 DLERLSDLPTGIEV-DATRLRQVLWNLISNAMKFTKEGGVVMTVSSEVIDEHAHIIMEIE 439

Query: 725 NNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++G  IPE     +F  +    S        G G+GL++ +  IN+  G +++ SS+EG 
Sbjct: 440 DSGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-SSEEGF 498

Query: 782 T---TINCRIP 789
               T+  R+P
Sbjct: 499 GSTFTVTIRVP 509


>gi|254444470|ref|ZP_05057946.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258778|gb|EDY83086.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1323

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 129/259 (49%), Gaps = 13/259 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT++V     L         A+  K+ F+ ++S+E+R+P+  +IG T LL  S    LN
Sbjct: 661 DVTEAVVQREELARLAAEADDANRAKSQFLANMSHEIRTPINGVIGMTSLLLDSP--GLN 718

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+QS+    I +S   LL L+NDILD + V+AG + L      L D L+++   +  +  
Sbjct: 719 SEQSKQARVIQSSGEALLALINDILDFSKVEAGKLDLEILDFDLRDTLDDLSLLLGQRAG 778

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E  +     +D ++   +  D  RL QI   +  NA+ F++ GS  +L +  D  +    
Sbjct: 779 EKQLEFICKADNQVPDRLRGDPGRLRQILINLAGNAIKFTANGSVKVLVSLADRDEKTAL 838

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             FSV + G  I E+  + +F+ F        R   G GLGL+I +  +NL  G + + +
Sbjct: 839 LRFSVIDTGIGISEEKKRLLFSEFTQADSSTTRLYGGTGLGLAISKQLVNLMDGEIGV-T 897

Query: 777 SDEGVTT---INCRIPSKE 792
           S++G  +      R+P +E
Sbjct: 898 SEKGSGSEFWFTARLPYEE 916


>gi|206975598|ref|ZP_03236510.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
 gi|206746060|gb|EDZ57455.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
          Length = 896

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +   + +             D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKDWISI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|83814673|ref|YP_446726.1| sensory box sensor histidine kinase/response regulator [Salinibacter
            ruber DSM 13855]
 gi|83756067|gb|ABC44180.1| sensory box sensor histidine kinase/response regulator [Salinibacter
            ruber DSM 13855]
          Length = 1443

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 122/236 (51%), Gaps = 7/236 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASST 618
            RKA  +K++F+ ++S+E+R+PLT+IIGF ++L  +++G+L++  +    Q    I     
Sbjct: 1202 RKAARLKSAFLANMSHEIRTPLTSIIGFAEVLG-AEVGALDASAAGSLEQKAHLIEQGGK 1260

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL+ +  +L+L+ ++AG M+L+   + L D      + +  K  +  +R++V +     
Sbjct: 1261 RLLDTLEGVLNLSKLEAGQMELDRRPVDLADRARRTAEELKPKATDKGVRLQVETGTGPV 1320

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               AD   +  +   +LSNA+ ++++G  V ++  R++G  +  V++ G  +  +  K +
Sbjct: 1321 RARADEGGVQIVVQNLLSNAIKYTNEGGRVRVRTYREDGAAVLEVEDTGIGMEPEAAKEL 1380

Query: 739  FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            F  F   +    R+  G G+GL++ +       G + + +     +    R+P  E
Sbjct: 1381 FEPFRQASEGIGRKYEGSGVGLAVTQKATEEMDGDIEVDTEKGDGSRFVVRLPRAE 1436


>gi|83814196|ref|YP_446585.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83755590|gb|ABC43703.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 441

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 5/236 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYI 613
           L E  E LR+AD ++   V +VS++LRSP+ +I G+ + +   K G L  ++ Q YV+  
Sbjct: 196 LQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVHM-KDGDLPPQERQRYVKTA 254

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  L  LVN++ +L+ ++   ++       + +L+ +V      +  E  + ++   
Sbjct: 255 LRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLRADL 314

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +     AD   + +  S ++ NA+ ++ +G  V ++   + G+   +V + G  IPED
Sbjct: 315 PERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNEQGEVCVAVADTGPGIPED 374

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC 786
               +F RF  V  +    R G GLGL+I ++ + LHG  + + S+  EG +   C
Sbjct: 375 DLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTSFRFC 430


>gi|87308035|ref|ZP_01090177.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87289117|gb|EAQ81009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 661

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 129/257 (50%), Gaps = 9/257 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q +    +++    AE AL     A   A  +K+ F+ ++S+ELR+PL  I+G++++++ 
Sbjct: 243 QILGASTDISARKEAEFALQRAKRAAESAVRVKSEFLTNMSHELRTPLAAILGYSEIMED 302

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               ++ S+  + V+ I  +   LL L+ DIL+ + +++G ++++       + L    +
Sbjct: 303 H---AVTSESLEAVDTIRRNGQHLLELIGDILEFSRIESGKLEVSAMPTPAYEFLKSTFE 359

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
           S      +  +R  V +SD      + D   + QI  ++++NA+ F+  G   V ++ A 
Sbjct: 360 SFRELADDKGLRFVVDVSDQIPEMIITDPVCVRQILWRLVTNAVKFTDAGEIGVAVRVA- 418

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            +G+   +V++ G  IP +M  S++  F    +   RR  G GLGL+I +    + GG +
Sbjct: 419 -DGNLELNVRDTGCGIPAEMLSSIYQPFRQADNSSTRRHDGAGLGLAICQKLSQMLGGDI 477

Query: 773 SISSSDEGVTTINCRIP 789
           S+ S     +    R+P
Sbjct: 478 SVRSQAGAGSQFTVRLP 494


>gi|291006677|ref|ZP_06564650.1| two component system histidine kinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 517

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E LR  D  +  FV  V+++LR+P  +++   D L+          +S+ V  +S
Sbjct: 278 LGDSIEELRVKDRQQQRFVADVAHDLRTPTASLVAAADSLEHPD----PESRSRAVALVS 333

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  LV+D+L+++  D+G  +L    + L +L   V+++I     + ++R+   +D
Sbjct: 334 TQARRLARLVDDLLEISRFDSGAAELRPEGVDLREL---VREAIELVTCDADVRLDATAD 390

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L   V D +RL  I   +L+NA+   ++  TV +    D G  +  V ++G  +PE++
Sbjct: 391 TTL---VGDPRRLHTIVCNLLANAVHHGAEPVTVAIDGT-DPGQVVLRVADSGPGVPEEL 446

Query: 735 CKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            + +F+RFV  +  R    G GLG++I +    +HGG +++ +    V T+ 
Sbjct: 447 TRILFDRFVRGDRARSATDGSGLGMAIAQQNALVHGGRITVHNDGGAVFTLT 498


>gi|229150109|ref|ZP_04278332.1| hypothetical protein bcere0011_16650 [Bacillus cereus m1550]
 gi|228633408|gb|EEK90014.1| hypothetical protein bcere0011_16650 [Bacillus cereus m1550]
          Length = 276

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 139/274 (50%), Gaps = 14/274 (5%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +SD   E  I  L N +      NV    R  ++L E  E  +K+ E+KN  + ++S++L
Sbjct: 4   ISDGNFEIHIPILKNDEIGELAANVN---RMAKSLKESIENEKKSQEMKNEMISNISHDL 60

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+T++IG+ DLL  +KL S   +  QYV  +   S  L N V+D+L+   ++   ++L
Sbjct: 61  RTPVTSLIGYADLL-GNKLHSNGEECEQYVSILKRKSYELKNQVDDLLEYCQINYREIEL 119

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +   + +  L+ ++      ++ + N+   + SD  L   V D   ++++F  ++ N++ 
Sbjct: 120 HKDEVDMKALIEQIMIDFVPQLDDANMSFYIKSDEVLHVEV-DVTLIVRLFENVIGNSIM 178

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVG 755
           +   G  + ++      +    +KN G  IP++    +F +F       ++H G   G G
Sbjct: 179 YGRDGKGIAIEIFNKTMNVEVEIKNFGQCIPKEDLPYIFEKFYRSEKSRSSHTG---GKG 235

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +GL+I +S   LH G +++ S+D+  T    ++P
Sbjct: 236 IGLAISKSIAELHQGDITVRSNDKE-TVFTVKLP 268


>gi|187777044|ref|ZP_02993517.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC
           15579]
 gi|187773972|gb|EDU37774.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC
           15579]
          Length = 464

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D++KN F+  VS+ELR+PLT+I G++  L ++++     K    ++ I   S  L  +
Sbjct: 239 KKDQLKNEFISSVSHELRTPLTSIKGWSITLNSNEVDKEVLKDG--LKIIEDESERLSGM 296

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD +   +G M LN   I + ++++ V++ +    + N I  K     KL +   D
Sbjct: 297 VEELLDFSKFVSGKMNLNKEEINICEIIDTVRKQLEPYAYRNRINFKATCINKLPNIYGD 356

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           + R+ Q+   +L NA  F+ +G  V L    +       VK+ G  I ++    V  +F 
Sbjct: 357 KNRIKQVLINLLDNAFKFTPEGGLVELNIKYEEEYITIFVKDTGVGISKEDLPRVKEKFY 416

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G+ +  G+GLSI +  + LH G + I S +   TTI+ ++P
Sbjct: 417 K-GNSGKSKN-GIGLSICDEIVKLHNGVLHIESEENKGTTISVKLP 460


>gi|198246231|ref|YP_002217299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940747|gb|ACH78080.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 778

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 125/241 (51%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  I +D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 431 LHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|162453847|ref|YP_001616214.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161164429|emb|CAN95734.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 955

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 31/255 (12%)

Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R E+   E  EA   AD     K+ F+ ++S+ELR+PL  I+G+  +LK S+  SL  + 
Sbjct: 448 RVEQRTAELKEATVAADAANRAKSDFLANMSHELRTPLNGILGYAQILKRSR--SLGEQD 505

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + VE I+ S + LL L+ND+LDLA +++  M+++ +       LN   +    +  +  
Sbjct: 506 LRGVEVIAESGSHLLTLINDVLDLAKIESRTMEIHPNDFHFPSFLNATAEICRIRAEQKG 565

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------- 718
           I         L   V AD++RL QI   +L NA+ F+  GS     A    G        
Sbjct: 566 IAFVFKPGPALPEGVRADQRRLRQILLNLLGNAIKFTENGSVTFTVAEVPGGSRGARKDL 625

Query: 719 ---------------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
                            F +++ G+ I  +    +F  F  V +  R  R G GLGL+I 
Sbjct: 626 PEDGASPESRTKTHRIRFEIEDTGTGIGAEHLDQIFLPFKQVGDKSR-HREGTGLGLAIS 684

Query: 762 ESFINLHGGHVSISS 776
           +  + L GG + + S
Sbjct: 685 QRIVTLMGGSIQVRS 699


>gi|327355100|gb|EGE83957.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ATCC 18188]
          Length = 2401

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 15/229 (6%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+ +VS++LR+P+  +IG ++LLK +   SL+ +Q  YVE I   +  LL L+
Sbjct: 1890 AAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---SLDREQDGYVESIRVCADTLLTLI 1946

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF--VA 682
            NDILD + ++AG MK++   + L + + EV +++     +  ++     DG   +   + 
Sbjct: 1947 NDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPNLLVMG 2006

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
            D  RL QIF  +LSN+  F+ KGS  +     D  +        V + G  I  +    +
Sbjct: 2007 DPVRLHQIFMNLLSNSYKFTPKGSVTVKAKVTDEDEGRIRITCKVADTGIGISGEQLVRL 2066

Query: 739  FNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSDEGVTT 783
            F  F S A     R   G GLGLSI ++ I ++ GG + +  S+EGV T
Sbjct: 2067 FRPF-SQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWL-QSEEGVGT 2113


>gi|309791767|ref|ZP_07686255.1| GAF sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
 gi|308226173|gb|EFO79913.1| GAF sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
          Length = 1216

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 172/375 (45%), Gaps = 47/375 (12%)

Query: 445  EGVAVFGPDGRIKLSNPAFRSL-----WK--TEENRLSPGTHIRNIAA--TCSRYYNESD 495
            EG+ +    G + ++N AFR L     W    E+  L+ G  I  + +    +  Y  SD
Sbjct: 856  EGMLLVDEHGMVLVANDAFRELADVLRWPDAPEQTELA-GQLIYTVLSRWQAAHIYPSSD 914

Query: 496  GWDLFAAIITSFDDERKSLQGTL-ELLSDSV-LEYSIIP-LPNA-------------QTM 539
               L A +    D  ++ L G L  + +D + +E+ ++P LP                 +
Sbjct: 915  LDHLCACLTQVADGRQRFLHGQLIAIATDGIAIEWGVLPALPEGSHDLNHERLDARWPIL 974

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            LTF ++TD+++AER              ++      + ++LRSPLT+I    D++     
Sbjct: 975  LTFRDITDAIQAER--------------LRQDLTSMMVHDLRSPLTSITTSIDMIFRGTA 1020

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            G + S Q + +    +S+  LL++VN +LD++ +++  M L+   + L ++     + + 
Sbjct: 1021 GEVTSLQREILTIAFSSTQHLLDMVNLLLDISRLESRQMPLDCMAVDLYEVAEAAIERMT 1080

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNG 717
                + ++RI + SDG+     ADR+ ++++   +L NA+ FS     V+  L+   +  
Sbjct: 1081 MIAQKQHVRINLQSDGEFLYAYADREMIMRVLQNLLDNAIKFSPANQQVVLSLQVLPEQN 1140

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                +V++ G+ +     + +F +F      G RR  G GLGL+  +  +  H G + + 
Sbjct: 1141 LVRVAVRDFGAGLKAMDKEKIFTKF---GQVGNRRSSGSGLGLTFCKLVVEAHAGTIDVE 1197

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P+
Sbjct: 1198 SVPGQGSTFFFTLPA 1212


>gi|229030925|ref|ZP_04186944.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271]
 gi|228730419|gb|EEL81380.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271]
          Length = 448

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L++ ++     +++ Y++ I   S  
Sbjct: 220 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSEEMSV--EERNHYLQIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEF--DVPDIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G T+           + S+ +NG  +  +    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGMEREEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELP 447


>gi|163758106|ref|ZP_02165194.1| putative two-component regulator sensor histidine kinase protein
            [Hoeflea phototrophica DFL-43]
 gi|162284395|gb|EDQ34678.1| putative two-component regulator sensor histidine kinase protein
            [Hoeflea phototrophica DFL-43]
          Length = 1325

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 128/255 (50%), Gaps = 10/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L         A+  K+ F+  VS+E+R+PL  IIGF++++   + G + 
Sbjct: 1069 DITQWKRTEEELRTAKRDAETANSHKSDFLARVSHEIRTPLNAIIGFSEMMSEERFGPIG 1128

Query: 604  SKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            S +  Y+EY   I  S   +L++VND+LD++ ++AG + + ++ + LND L E    +  
Sbjct: 1129 SPR--YLEYAHDIGNSGKHVLDIVNDLLDISKIEAGQVDMEFTAVSLNDHLAESVSLLQP 1186

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719
              +   + I+      +   VAD++ + QI   +LSNA+ ++  G  +++  +   +G+ 
Sbjct: 1187 MANSQRVIIRTSLSESVPDVVADQRSVKQIALNLLSNAIRYTPSGGQIVVSTSYEPSGNV 1246

Query: 720  IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SS 776
            +  +++ G  +     +     F  V    R +  G GLGL + ++ +  +     I S+
Sbjct: 1247 VIRIRDTGIGMNRKELEQAMKPFGQVGAGPRQRGEGTGLGLPLTKAMVEANRAQFDIVSA 1306

Query: 777  SDEGVTTINCRIPSK 791
            + EG T ++   P +
Sbjct: 1307 AGEG-TLVSIAFPPQ 1320


>gi|163797110|ref|ZP_02191065.1| ATP-dependent protease peptidase subunit [alpha proteobacterium
           BAL199]
 gi|159177626|gb|EDP62179.1| ATP-dependent protease peptidase subunit [alpha proteobacterium
           BAL199]
          Length = 507

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 163/370 (44%), Gaps = 43/370 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN--IAATCSRYYNESDGW 497
           I+ + + + +  P GR+ L+N   R  +  +       T IR+  I AT  +      G 
Sbjct: 153 IESIPDPLLLIDPRGRVALANSEARRQFGKQIVGRDLSTVIRHPGILATVRQVLAGEPGG 212

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAERALT 556
           D+  A           L   +E + +  +E  + P P+ A  ++ FV+++          
Sbjct: 213 DVEIA-----------LAAPVERVFNVRIEALMEPEPDGASALMLFVDLS---------- 251

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               A+R+ ++++  FV +VS+ELR+PL  ++GF + L+        ++  +++E +   
Sbjct: 252 ----AIRRTEQMRVDFVANVSHELRTPLATLLGFIETLQGPARDDAEARD-RFLEIMRVQ 306

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              +  LV D+L L+ ++    K     I L  +LN VK ++  +    ++R+ +  D  
Sbjct: 307 GNRMSRLVQDLLSLSRIEISEHKPPSERIDLEPMLNSVKATLDLEARRKDMRVGLEVDAT 366

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----------DNGDFI-FSVK 724
           L   V     L Q+   +L NA+ +   G+ + + A R            +G  +  +V+
Sbjct: 367 LPQVVGAADELTQVVQNLLDNAIKYGKPGTEITVAARRADRVPASYPGGPSGKAVAIAVR 426

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +    +  RF  V  A      G GLGL+IV+  ++ H G ++I S+    +
Sbjct: 427 DRGDGIPAEHIPRLTERFYRVDAARSRDLGGTGLGLAIVKHIVSRHRGTLTIHSTPGEGS 486

Query: 783 TINCRIPSKE 792
                +P  E
Sbjct: 487 VFTVYVPVGE 496


>gi|186470431|ref|YP_001861749.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184196740|gb|ACC74703.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 2010

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 130/262 (49%), Gaps = 20/262 (7%)

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            T+  +A +AL EK + L    + K+ F+ ++S+ELR+PL +++  +D L  +  G+L+++
Sbjct: 1299 TEVEQARQALEEKAKQLALTSKYKSEFLANMSHELRTPLNSLLILSDQLCKNSEGNLSTR 1358

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q ++   I +S   LL L+NDILDL+ +++G + ++++   L DL + V+++        
Sbjct: 1359 QIEFSRTIHSSGNELLMLINDILDLSKIESGTVAMDFAEHRLADLTSYVERTFRHVAEAR 1418

Query: 666  NIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---- 719
            N+   VI  G     S   D +RL QI   +LSNA  F+ +G  V L     +G +    
Sbjct: 1419 NVDF-VIELGTHLPASIRTDIKRLQQILKNLLSNAFKFTHRGH-VTLSVEEVSGGWSADN 1476

Query: 720  ----------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                       FSV + G  I  D  + +F  F        R+  G GLGL+I      L
Sbjct: 1477 ERLHSAPACIAFSVSDTGIGISADKQQIIFEAFQQADGSTSRKYGGTGLGLAISRELSKL 1536

Query: 768  HGGHVSISSSDEGVTTINCRIP 789
             GG + + SS    +T    +P
Sbjct: 1537 LGGEIRLISSPNKGSTFTLYLP 1558


>gi|42522105|ref|NP_967485.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574636|emb|CAE78478.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 766

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +    A   K+ F+  +S+E+R+PL  ++G  +LL  + L   N +Q + +  + 
Sbjct: 363 LQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAELLNETHL---NFEQKELLISLQ 419

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++   LL+++N+ILD +  ++G M+L     +L+DL+ EV+  I+T +   N++      
Sbjct: 420 SAGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVLRKNLQFTFHPP 479

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGD--FIFSVKNNGSS 729
                 V D  RL Q+   +L NA+ F+ +G+   TV      + G     F VK+ G  
Sbjct: 480 EHDRWIVGDSLRLKQVLMNLLGNAVKFTDRGAIELTVQPYPGSEPGKETIFFEVKDTGIG 539

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I ++  K VF+ F        RR  G GLGLSI +  + L GG +   S
Sbjct: 540 IAKENLKKVFDEFGQEDSSVTRRFGGTGLGLSISQKIVQLMGGELYCES 588


>gi|172056400|ref|YP_001812860.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171988921|gb|ACB59843.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 845

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD +K   V  VS+ELR+PL++I GFT+L+   ++ ++  KQ +Y+  I   +  L NL
Sbjct: 614 EADRLKTELVSTVSHELRTPLSSIYGFTELMLNREIDAI--KQQKYLSTIHNETERLSNL 671

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V D LD+  + +G  +   + + L  ++++V          ++I++ ++S  +  + + D
Sbjct: 672 VTDFLDVQRMQSGGQRYQMAHLDLYSIVDQVIGVYKASNGLHDIQLHLLSVER-PAIIGD 730

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R+ Q+ + +++NA+ +S  G  V +  + D  +    + ++G  IP+     +F++F 
Sbjct: 731 ETRIKQLLNNLVNNAIKYSPDGGQVDITVSTDQENATIQITDHGIGIPQYAFAHLFDKFY 790

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +   RR  G GLGLSI +  +  H G + + S+    +T    +P
Sbjct: 791 RVDNSDTRRIGGTGLGLSICKEIVKEHDGVIHVESTVGKGSTFTVALP 838


>gi|320333504|ref|YP_004170215.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus maricopensis DSM 21211]
 gi|319754793|gb|ADV66550.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus maricopensis DSM 21211]
          Length = 418

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 6/233 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +AL + +  + + +  +++ELR+PL  +    D L    L     +    +  +S    +
Sbjct: 179 DALERLEGERRNMIADIAHELRTPLAVMQARLDALADGVLPMTPGE----IGVLSQQVEL 234

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV D+  L+  +A  + L+ +T    DL+  V +S  ++ H     ++         
Sbjct: 235 LTRLVGDLRTLSLAEAHQLSLDRTTFDARDLVAHVARSFESRAHARTQMLRTHLPTGPAP 294

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             ADR RL Q    +L NA+  +     V L    +     F+V+++G+  PED    +F
Sbjct: 295 LHADRDRLAQALGNLLDNALRHTPDAGVVQLSVRAEADAVTFAVRDSGAGFPEDAAPRLF 354

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +RF  V  A      G GLGL+IV++   LHGGHV+  +  +G       +PS
Sbjct: 355 DRFYRVHGARDRATGGSGLGLAIVQAITALHGGHVTARNHPDGGAEFTLTLPS 407


>gi|288940490|ref|YP_003442730.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895862|gb|ADC61698.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 762

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+  + H+S+E+R+PL  I G  +LL+    G LN++Q   V  I  +   LL ++
Sbjct: 249 ANAAKSHLLAHMSHEIRTPLNVITGLAELLEQ---GELNAQQQHQVRRIQEAGESLLGIL 305

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           +DILDL+ ++AG + +      L+ LL  ++           + + + I     G+F+ D
Sbjct: 306 DDILDLSRIEAGKLGIARQPFELHKLLARIESFQGRCARAKGLSLDLDIPPLPAGAFLGD 365

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+ + ++ NA+ F++ G       + +A  D     F V++ G  I   + + +F
Sbjct: 366 PLRLEQVLNNLIGNAIKFTNTGGITLRIQVREAETDTPYLHFEVEDTGIGIEPQILEDLF 425

Query: 740 NRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
             FV   +N  R  R G GLGL+I +  + L GG + ++S    G T
Sbjct: 426 QPFVQADANLTRS-RGGTGLGLAISKHLVELMGGKIGAVSQPGRGST 471


>gi|283851902|ref|ZP_06369178.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
 gi|283572626|gb|EFC20610.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
          Length = 1507

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 124/242 (51%), Gaps = 13/242 (5%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +V+D+ R  + L E  +   +A+  K+ F+ ++S+E+R+P+  I+G T L        L 
Sbjct: 1105 DVSDNKRFAKELLEAKQKAERANRTKSEFLANMSHEIRTPMNGILGMTQLALNR---DLP 1161

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                ++++ +  S   LL+++NDILDL+ ++AG + L      L +++    + +     
Sbjct: 1162 DDVREFLQLVHQSGQSLLDIINDILDLSKIEAGRVVLEQKPFDLVEMVESTLKPLGLLAR 1221

Query: 664  ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-- 717
            +  +  +  I+ G     + D+ RL QI + ++ NA+ F+ +G     V L   ++ G  
Sbjct: 1222 DKGLTFLFSIAPGVPDRVIGDKGRLRQILTNMVGNAIKFTKRGRVEVKVRLAEIQEPGRA 1281

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +F +K+ G  I      S+F +F    S+AH  Q  G GLGL+I ++ + + GG + +
Sbjct: 1282 SLLFLIKDEGIGISSAQIHSIFEKFEQIASSAHV-QYGGTGLGLAISKALVEMMGGVIQV 1340

Query: 775  SS 776
             S
Sbjct: 1341 ES 1342


>gi|269960019|ref|ZP_06174396.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835318|gb|EEZ89400.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 787

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LTE  E   +A + K+ F+  +S+ELR+P+  ++G + ++ +    +   +  ++V+ I 
Sbjct: 256 LTEATEKAERAAKAKSQFLATMSHELRTPMNGVLGISQIIASE---TKERETKEHVQVIL 312

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L+ ++NDILD + V+   ++L  +   L  +L  V  +I   + E NI++ V ++
Sbjct: 313 DSGQHLMTILNDILDFSKVEENKLELEAAPFNLPQVLTPVCSAIQPLIEEKNIKLYVENE 372

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIP 731
                 F  D  R+ QI   +  NA+ F+S G  V+++A  D      + S+ + G  IP
Sbjct: 373 VPENIEFNGDCARIRQILFNLAGNAVKFTSDGH-VLIRAELDEPRKRLLLSINDTGIGIP 431

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D    +FN F        R+  G GLGL+IV+    L GG V + S +   T     +P
Sbjct: 432 ADKQDRIFNSFEQADTSTTRKFGGTGLGLAIVKKLTELMGGEVKLKSVESIGTQFLVELP 491


>gi|219870720|ref|YP_002475095.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
 gi|219690924|gb|ACL32147.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
          Length = 744

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 123/231 (53%), Gaps = 10/231 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E + K    K++ +  +S+ELR+PL  IIG + +L     G L+++Q +Y
Sbjct: 222 RDITERKRYQEMIEKNSRDKSTLMATISHELRTPLNGIIGLSRILLE---GELSAQQREY 278

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L ++ +DI+DL  +D+  ++L  S +  + L++ +         +  I+ 
Sbjct: 279 LKTINISAVSLGHIFSDIIDLEKIDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKF 338

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727
            +  D  L  FV  D  RL QI   +++NA+ F+  G  + LK   RD+  + F +K++G
Sbjct: 339 TIQYDDNLPDFVCVDNARLSQILWNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSG 398

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             I +   + +F  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 399 IGIKKSEQRKIFAMFYQSENSQGKKAQGSGIGLAISKRIARLMGGDLTVES 449


>gi|220909969|ref|YP_002485280.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
 gi|219866580|gb|ACL46919.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
          Length = 1002

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 8/230 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+  V++EL++PL  I+G+  LL+        + Q+  +  I  ++TI   LV
Sbjct: 773 ANRFKTEFLLTVTHELQAPLATILGWARLLQAKSFNPDTTTQA--LAAIERNATIQAKLV 830

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-- 682
            D+LD++++ +G ++L      L  L+               I +  +S   + SF A  
Sbjct: 831 KDLLDISSLLSGNLRLKAQLFDLVALVQNAMAKFRPLAEAKGIDLAELST-NVASFPALI 889

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+ + +L NA+ F+  G  V ++  R + +   +V + G  I  D    +F+RF
Sbjct: 890 DGDRLRQVITNLLDNALKFTPAGGQVAIQLERQDAEVQITVTDTGIGIRPDFLPYIFDRF 949

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
               +  R    G+G+GL+I    + LH G +  +S+ EG  TT   R+P
Sbjct: 950 TQAESPSRYTPGGLGIGLAIARHLVELHHGTIIATSAGEGQGTTFTVRLP 999



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 5/236 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL + D  K +F  +VS+E R+PLT ++G        +   L+  Q Q +E I  + 
Sbjct: 346 RAEALAELDRAKTAFFSNVSHEFRTPLTLMLGPAADALADQEDPLSPGQQQRIELIQRNG 405

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVN +LD + +++  ++  Y    L     E+       + +  +R  V      
Sbjct: 406 LRLLKLVNTLLDFSQIESDRLQAVYEPTDLATFTAELASVFRAAIEQAGLRFVVDCSPLP 465

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
                DR+   +I   +LSNA  F+  G   +    R  G+ +  ++++ G  IP     
Sbjct: 466 EPVYIDREMWEKIVLNLLSNAFKFTFSGEITVRLQQR--GEQVELAIQDTGIGIPVTEMP 523

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F RF  V  A      G G+GLS+V+  + LHGG V + S +   +     IP+
Sbjct: 524 RLFERFHRVKGAQGRTFEGSGIGLSLVQELVKLHGGTVQVDSVEGSGSCFRVSIPT 579


>gi|160936856|ref|ZP_02084221.1| hypothetical protein CLOBOL_01745 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440237|gb|EDP17983.1| hypothetical protein CLOBOL_01745 [Clostridium bolteae ATCC
           BAA-613]
          Length = 374

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 127/249 (51%), Gaps = 9/249 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSL 602
           N+   V   R L +K    R+++  KN  + +V+++LR+PLT+IIG+ +LL   SK+ + 
Sbjct: 118 NLNKMVEDIRELMDKE---RESERTKNELITNVAHDLRTPLTSIIGYLELLAGNSKIPA- 173

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q +Y+E     +  L  L+ D+     ++ G + ++ S + +  LL ++ +      
Sbjct: 174 -QMQHKYIEIAYGKARRLEKLIEDLFGFTKLNYGRISMHVSQLDVVKLLGQLLEEAYPNF 232

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E N+   + S+  +    AD   L ++F  ++ NA+ + + G  V++K          S
Sbjct: 233 VEKNLSYDLQSNVPVKIITADGNLLARLFDNLIGNAIKYGADGKRVLVKILAQEDVVTVS 292

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + N G  IP +    +FN+F  V  +      G GLGL+I +  +++HGG ++++S  +G
Sbjct: 293 ITNYGYVIPPEELPLIFNKFYRVEQSRSSSTGGTGLGLAIAKEIVDMHGGTINVTSDLDG 352

Query: 781 -VTTINCRI 788
            V T+  ++
Sbjct: 353 TVFTVKLQV 361


>gi|295319850|gb|ADG00228.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. 230613]
          Length = 522

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF++ LK          + ++++ I+  +  L 
Sbjct: 293 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 349

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL L+ ++    +L    I LN+L+ +V   +     + NIRI ++ + K+   +
Sbjct: 350 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLI 408

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            ++ +  Q+   ++ NA+ ++     V +   +D G+ +F V++ G  I E+    +F R
Sbjct: 409 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFER 468

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +    G + + S  +  T    +IP
Sbjct: 469 FYRVDKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 518


>gi|163745614|ref|ZP_02152974.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161382432|gb|EDQ06841.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 696

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 181/440 (41%), Gaps = 68/440 (15%)

Query: 379 FSVYKSSETHKDTW--HLPNGQTLHVIVTSNPRGGTI--WMFENLTVQVDLETKYNTLVK 434
           F V++ + T K+ W  H P+     ++      G TI  W    L     L  +    ++
Sbjct: 252 FGVWQLAATVKNGWPEHRPDFWLHWLLRLQGAAGVTIFAWYIMRLAENRKLAEER---LR 308

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +  E +DH   G  ++   G + L N  +R +    E  + PG+    I     R     
Sbjct: 309 MGIEALDH---GFVMYNAKGILVLCNEKYREIHDYSEV-VKPGSSYEKIVRDSIRRGIVP 364

Query: 495 DG----------WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           D           W L      +F+ E++   G +   SD  +E       +   +   ++
Sbjct: 365 DAVGKEEEWIRVW-LEKRENGAFETEQRMPDGRIIRTSDRRME-------DGSVVGLRID 416

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--------- 595
           VTD  +A     + N+A       K  F+  +S+ELR+PLT I+G   L +         
Sbjct: 417 VTDLKKALLTAEDANKA-------KTDFMGVLSHELRTPLTVILGHVRLARHFDRTPAAR 469

Query: 596 ----------------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
                             KL +  SK    ++ +  S   LL L+N++LD A +DAG + 
Sbjct: 470 DLSTAIDADPQTRETLAPKLATTLSKLGDIMQTVERSGNHLLTLINEVLDFAKIDAGSLS 529

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +    + ++D++      +   + +  + +KV S    G  +AD +R+ QI   +LSNA 
Sbjct: 530 ITMEPVQIDDIVAPTVDQLRPMIEDKGLELKVKS--ATGVMLADGKRIQQILINLLSNAT 587

Query: 700 DFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            FS +G+  I    R  G+ + F V + G  IPE+  + VF  F        RR  G GL
Sbjct: 588 KFSDQGT--ISLTCRIRGEVVEFRVTDTGIGIPENELERVFEPFHQVDSTATRRFGGTGL 645

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL+I       HGG +  +S
Sbjct: 646 GLAISRDIATAHGGSLVATS 665


>gi|78047475|ref|YP_363650.1| sensory/regulatory protein RpfC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035905|emb|CAJ23596.1| sensory/regulatory protein RpfC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 726

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 126/248 (50%), Gaps = 17/248 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +    +
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNMILQPQAKTRGLDYATE 289

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724
           V +D        D   L Q+   +L NA+ F+  G  V+L+ AR +G+        F V+
Sbjct: 290 VATDVP-DLLKGDTGHLRQVLLNLLGNAVKFTEHGH-VLLRVARVSGNGADTMRLRFDVE 347

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG +  + +  G 
Sbjct: 348 DSGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGAIGFAPNPSGG 406

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 407 SVFWFELP 414


>gi|329998865|ref|ZP_08303233.1| histidine kinase KdpD [Klebsiella sp. MS 92-3]
 gi|328538537|gb|EGF64646.1| histidine kinase KdpD [Klebsiella sp. MS 92-3]
          Length = 895

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 125/263 (47%), Gaps = 7/263 (2%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  S      LT   E  R   E   ++NS +  +S++LR+PLT + 
Sbjct: 624 IPEQQRLLETFTLLVASALERLTLTASEEQARLTSERESLRNSLLAALSHDLRTPLTVLF 683

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L T  L S  SK +     I         LVN++LD+A + +G   L+   + L 
Sbjct: 684 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLHKEWLTLE 742

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    + +   +   +I++ +    +L     D     ++   +L NA  ++   +++
Sbjct: 743 EVVGSALRMLEPSLGGQHIQLDLPDPLQL--VHVDGPLFERVLINLLENAHKYAGSRASI 800

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            ++A  D       V +NG  IP    +++F++F          GVGLGL+I ++ +++H
Sbjct: 801 GIRAEADARQLSLEVWDNGPGIPAGQEQTIFDKFARGNKESAIPGVGLGLAICQAIVDVH 860

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +S S+  EG  +    +P +
Sbjct: 861 GGTISASNRPEGGASFRVTLPGE 883


>gi|260768322|ref|ZP_05877256.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972]
 gi|260616352|gb|EEX41537.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972]
          Length = 568

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 12/242 (4%)

Query: 555 LTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  ++E+ ++A+E + +   FV  +++ELR+PL  ++G  +LL  +   SL+ +Q  Y+ 
Sbjct: 188 MKRQDESRKRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDT---SLDPEQLSYLT 244

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S  +L  ++ND+LD + ++AG+M+L  +     DL + +    + K  E  I   V
Sbjct: 245 NLQHSGDMLRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKAREKKIEFVV 304

Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSS 729
            + G+  ++ + D +R+ QI   ++ NA+ F+ +G+  +  AAR  +   +  + + G  
Sbjct: 305 NTRGEFPTYWIGDVERINQILVNLVGNAIKFTHRGAVTV--AARWVDERLLLRISDTGIG 362

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     ++F+ F  V  +   Q  G GLGL+I ++ + L  G +  SS +   T     
Sbjct: 363 IPLAAHDTLFDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGEGTEFFVS 422

Query: 788 IP 789
           IP
Sbjct: 423 IP 424


>gi|239787644|emb|CAX84112.1| sensor protein [uncultured bacterium]
          Length = 652

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 555 LTEKNEA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +TE+ +    LR+++     F    S+++R PL+ I+GF  LL       ++++ ++Y++
Sbjct: 414 ITERKQVESQLRRSNAELEQFAYVASHDMRDPLSVIVGFCKLLAAQCEAKMDAESAEYLD 473

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +I+ S+  LL +  D+L+LA V  G  K  ++   L  +++   +++  ++ + N     
Sbjct: 474 HIAGSANRLLGMTTDLLELAKVAQG--KRAFAPTDLGQVVDVALENLKQRIQDAN---AS 528

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSS 729
           +S   L   +AD ++++ +F  ++ NA+ +  +     + + AA+  G   F V++NG  
Sbjct: 529 VSSAPLPVILADEKQMVSLFQNLIGNAIKYRREDVPLHIHIGAAQAEGQVTFFVRDNGVG 588

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I  +  + +F  F     +  R+G G+GL++    +  HGG + + S+
Sbjct: 589 IAPEYIEKIFMVFNRVPDQADRKGWGIGLAVCHRIVERHGGRIWVEST 636


>gi|222055917|ref|YP_002538279.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221565206|gb|ACM21178.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 645

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 119/243 (48%), Gaps = 8/243 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +A  + +  K+ F+ ++S+ELR+P+  I+G   LL +   G L  KQ + +   +
Sbjct: 250 LEQSRQAAEEGNRAKSQFLANMSHELRTPMNGILGVLQLLLSGHAGQLEKKQRELLLKAT 309

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S  +LL +++DILDL+ ++AG ++++     L   L++     +++     + + +   
Sbjct: 310 KSGDLLLQIISDILDLSKIEAGKLQIHEQPFSLRKCLSDAVDYFSSEAQGKGLHLTLSIA 369

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGS 728
             +   V  D+ RL Q+   ++ NA+ F+  G   +      K A    +  F++ + G 
Sbjct: 370 PDVPDVVKGDQVRLRQVLLNLIGNAVKFTDHGRVEVKAVTGNKTATGETEITFTINDTGI 429

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D    +F  F  V ++ R +  G GLGL+I    + + GG ++  S +   +T   
Sbjct: 430 GIPADKKHLLFRSFSQVDSSDRRRYGGTGLGLAISSQIVEMMGGRIAFDSREGEGSTFFF 489

Query: 787 RIP 789
            +P
Sbjct: 490 TVP 492


>gi|296878312|ref|ZP_06902320.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
 gi|296430610|gb|EFH16449.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
          Length = 429

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 36/343 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +S G+     +G I L N   + + K+E N+L  G +I  +         E +       
Sbjct: 95  ISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK-------EEEILKQILR 147

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEK 558
            I S D+E  ++        D V +  + P  L N   ++  + VN+ D       +T+K
Sbjct: 148 FIGSKDNETANITTK----DDIVYKIKVDPVYLQNTNNVIIGSIVNIED-------ITKK 196

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++ ++++E I + S 
Sbjct: 197 ----VKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR-NRFLEIIESESD 251

Query: 619 ILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            L  L++DIL L+ V   D  +M+     +V+ D+  EV +       E NI +    D 
Sbjct: 252 RLKRLIDDILLLSFVENKDTLLME----NVVVYDVFKEVYEITQHSASEKNIEVLYKCDD 307

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +NG  IP++  
Sbjct: 308 KSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGIPKEDV 367

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +F RF  V  A      G GLGL+I +  +    G + + S
Sbjct: 368 ERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKS 410


>gi|289435295|ref|YP_003465167.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171539|emb|CBH28085.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 596

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 128/246 (52%), Gaps = 9/246 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +    
Sbjct: 336 ILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-IDG 394

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  + 
Sbjct: 395 VAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLEKVMANF 454

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAARD 715
                EN + + +  +     +  D  R+ Q+   ++ NA+  + K      V+LK   D
Sbjct: 455 DVLAKENFVELGLELETPNLEYSYDPDRMEQVLINLIMNAIRHTGKEGYQGKVVLKQTID 514

Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGG 770
             N   I +V +NGS I E+    +F RF        RG+  G G+GL+IV++ +  HGG
Sbjct: 515 ETNNKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHGG 574

Query: 771 HVSISS 776
            +S+ S
Sbjct: 575 KISVKS 580


>gi|238893743|ref|YP_002918477.1| sensor protein KdpD [Klebsiella pneumoniae NTUH-K2044]
 gi|238546059|dbj|BAH62410.1| sensor for high-affinity potassium transport system [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 895

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 125/263 (47%), Gaps = 7/263 (2%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  S      LT   E  R   E   ++NS +  +S++LR+PLT + 
Sbjct: 624 IPEQQRLLETFTLLVASALERLTLTASEEQARLTSERESLRNSLLAALSHDLRTPLTVLF 683

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L T  L S  SK +     I         LVN++LD+A + +G   L+   + L 
Sbjct: 684 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLHKEWLTLE 742

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    + +   +   +I++ +    +L     D     ++   +L NA  ++   +++
Sbjct: 743 EVVGSALRMLEPSLGGQHIQLDLPDPLQL--VHVDGPLFERVLINLLENAHKYAGARASI 800

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            ++A  D       V +NG  IP    +++F++F          GVGLGL+I ++ +++H
Sbjct: 801 GIRAEADARQLSLEVWDNGPGIPAGQEQTIFDKFARGNKESAIPGVGLGLAICQAIVDVH 860

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +S S+  EG  +    +P +
Sbjct: 861 GGTISASNRPEGGASFRVTLPGE 883


>gi|28379576|ref|NP_786468.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254557718|ref|YP_003064135.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300769514|ref|ZP_07079400.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308181804|ref|YP_003925932.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|28272416|emb|CAD65339.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254046645|gb|ACT63438.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300492929|gb|EFK28111.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308047295|gb|ADN99838.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 386

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 120/231 (51%), Gaps = 4/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ +  K++ + +VS+++R+PLT+IIG+  L++  +  S      +Y       +T + +
Sbjct: 144 REIERSKDALITNVSHDIRTPLTSIIGYLGLIENKQYQS-EEDLIKYAHIAYLKATQMKS 202

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV D+ +          L  + + L  +L ++  S   + ++ +++I+V S  +     A
Sbjct: 203 LVEDLFEYTKSRQTETPLAINRLNLTAMLEQLAASFELEANKKHLKIEVESGTQPIYIEA 262

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L ++FS +++NA  + +    V+L+A +   + +  V N+G  IP +    +F RF
Sbjct: 263 DAEKLGRVFSNLITNAFKYGTGAKNVVLQAEQRGEEVVIHVTNDGQRIPAESLGRLFERF 322

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S ++ HGG++   S DE  T+    +P K
Sbjct: 323 YRVEESRSKATGGSGLGLAIAQSIVDHHGGYIYAQSDDEQ-TSFVIHLPVK 372


>gi|254496713|ref|ZP_05109575.1| hypothetical protein LDG_1152 [Legionella drancourtii LLAP12]
 gi|254354054|gb|EET12727.1| hypothetical protein LDG_1152 [Legionella drancourtii LLAP12]
          Length = 537

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 128/242 (52%), Gaps = 11/242 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  +A+  L    EA   A   K  F+ ++S+++R+PLT ++G   LL+ +     
Sbjct: 215 LDITELKKAQADLNIAKEAAEAASHAKTEFIANMSHDIRTPLTGVVGMAKLLEDN---VH 271

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATK 661
           ++ Q QY  ++  S   LL+++N ILD+ + D A    L+  +  L++++N++ Q     
Sbjct: 272 DANQKQYAHWLGESGKQLLHMLNGILDVVSADNAHEDDLHEESFNLHEVINDIVQLERPS 331

Query: 662 MHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
                + +    D  +  F V+D+ ++ +I   +L NA+ F+ +G   I    L+    +
Sbjct: 332 TLIKGLDLVTFVDAAIPPFLVSDQTKIHRILLNLLGNAIKFTQEGQVGIHVNLLEKNETH 391

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               F + + G  IP+++   VF+RF  +  +++G   G G+GL I +S++ L GG + +
Sbjct: 392 VLVQFRITDTGIGIPQELQDKVFDRFYRIIPSNKGTYTGHGVGLHIAQSYVELLGGEILL 451

Query: 775 SS 776
           SS
Sbjct: 452 SS 453


>gi|225570976|ref|ZP_03779999.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM
           15053]
 gi|225160438|gb|EEG73057.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM
           15053]
          Length = 959

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 126/253 (49%), Gaps = 18/253 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQS 607
            R E+ L +  E  + A   K+ F+  +S+++R+P+  I+G       S +G L    ++
Sbjct: 430 ARQEQLLRDALEEAKAASNAKSDFLSRMSHDIRTPINAIVGM------STIGQLKIDDRN 483

Query: 608 QYV---EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           Q V   + I  SS  LL+L+NDILD++ ++ G M L      L++L+N +   + ++   
Sbjct: 484 QSVNCFKKIDDSSRYLLSLINDILDMSKIENGKMALTDEQFDLHELINSITAIVYSQSVF 543

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNG--D 718
            NI+ +V  +  L   ++ D  R+ QI   +LSN++ F+  G  + L   ++ R  G   
Sbjct: 544 KNIQFEVYCEDSLQQYYLGDALRMNQILMNLLSNSLKFTPAGGMITLHVKESKRRCGYSY 603

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V ++G  + ED  K ++  F   A    R   G GLGLSIV + + L  G +++ S
Sbjct: 604 LAFQVTDSGKGMSEDFMKRLYQPFEQEAADTARNLTGTGLGLSIVYNLVQLMNGTINVES 663

Query: 777 SDEGVTTINCRIP 789
                T  +  IP
Sbjct: 664 RLGEGTVFSIEIP 676


>gi|239628737|ref|ZP_04671768.1| sensor protein kdpD [Clostridiales bacterium 1_7_47_FAA]
 gi|239518883|gb|EEQ58749.1| sensor protein kdpD [Clostridiales bacterium 1_7_47FAA]
          Length = 538

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 121/236 (51%), Gaps = 6/236 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISA 615
           E N    + + +K++ ++ +S++LR+PLT I G    L    LG ++       ++ I  
Sbjct: 299 EDNRVQVERERLKSTLLRSISHDLRTPLTGISGSAGFL-YDNLGIMDDATIKSMLKDICT 357

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  L ++V ++L++  +  G + +N    VL+D+++   + ++ ++  + +R     D 
Sbjct: 358 DSEWLSSMVENLLNMTRIQEGRLDINKKKEVLDDIVSSAVRLVSKRIGNHTLRTHTPEDI 417

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L  F  D +  +Q+   +L NA   S   +TV LK  ++    +F+V +NG  + ++  
Sbjct: 418 IL--FPVDGRLFIQVLVNLLDNAFRHSGNSTTVTLKVVKEGDVLVFTVSDNGVGLSQEKI 475

Query: 736 KSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+ F + A+    ++RGVGLGL+I ++ +   GG ++  +  +G      R+P
Sbjct: 476 DKIFDNFFTTAYEKGDKQRGVGLGLTICKAIVEAQGGTITAYNGSQGGAVFEIRMP 531


>gi|163744440|ref|ZP_02151800.1| periplasmic sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161381258|gb|EDQ05667.1| periplasmic sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 592

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +TFV+VT  +    AL    +ALR+ADE    K+ F+  VS+ELR+PLT++ G   L  +
Sbjct: 322 VTFVDVTKRIATTTAL---EQALREADEANRAKDEFISVVSHELRTPLTSLKGGLALALS 378

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            KLG +       ++    +   L  LV++IL +  ++   + L +  + L  LL +  +
Sbjct: 379 GKLGEVRGPLRSSLDIAHRNGVRLSRLVDNILLVQKLEVQALSLEWLPVDLPTLLRDSIE 438

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                 HE  +R+ +    +    + D   + Q+   ++SNA+ FS  G+TV      + 
Sbjct: 439 ENRMYAHERGVRLDIGKIDQAAVVLGDAFAIRQVVDNLISNAVKFSHVGNTVEGTLTTNQ 498

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G    S++++G  IP+ M + VF RF      GQ+  +G GLGL I        GG +  
Sbjct: 499 GRVRISIRDHGRGIPDGMEERVFGRFGQLDDDGQKSTQGSGLGLHISRQLARQMGGDLFY 558

Query: 775 SSSDE 779
            S  E
Sbjct: 559 ESEVE 563


>gi|330445983|ref|ZP_08309635.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490174|dbj|GAA04132.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 700

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 128/240 (53%), Gaps = 9/240 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  N+T   +    L E  +    A++ K+ F+  +S+E+R+PL  ++G   L+++  L 
Sbjct: 301 TAKNITSRKKRLFDLQEARKQAESANKAKSQFIAMMSHEIRTPLNAVLG---LMESLSLS 357

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+SKQ  ++  +  S+ +LL ++NDILDL+ +++G  +L  S I + + +  V   ++ 
Sbjct: 358 GLDSKQKLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINIVESIKLVADQLSP 417

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  + N++++  I D        D+ R+ Q+   ++ NA+ F+S GS  I+  AR   + 
Sbjct: 418 QATKKNVQLQCEIDDSIPKQIYGDKNRIAQVLFNLIGNAVKFTSVGSVRIV--ARKIEET 475

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I  +V + G  I +D  +++FN F        RR  G GLGL+I +  I    G +S+ S
Sbjct: 476 IEIAVIDTGIGIAKDAQENIFNPFHQADGSITRRYGGTGLGLAISQYLIEKMKGKISLES 535


>gi|326625078|gb|EGE31423.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 788

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 125/241 (51%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 274 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 330

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 331 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 390

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D GD 
Sbjct: 391 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDEGDM 440

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  I +D    +F  +  V ++H G+   G G+GL++        GG +++S
Sbjct: 441 LHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVS 500

Query: 776 S 776
           S
Sbjct: 501 S 501


>gi|228939673|ref|ZP_04102255.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228958791|ref|ZP_04120502.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228972535|ref|ZP_04133141.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979143|ref|ZP_04139488.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|229044253|ref|ZP_04191926.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|229109962|ref|ZP_04239542.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229127904|ref|ZP_04256889.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228655548|gb|EEL11401.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228673483|gb|EEL28747.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|228725078|gb|EEL76362.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|228780576|gb|EEM28798.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228787172|gb|EEM35145.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228800888|gb|EEM47794.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228820011|gb|EEM66054.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 312

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     +    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311


>gi|167855126|ref|ZP_02477898.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
 gi|167853761|gb|EDS25003.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
          Length = 744

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 123/231 (53%), Gaps = 10/231 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E + K    K++ +  +S+ELR+PL  IIG + +L     G L+++Q +Y
Sbjct: 222 RDITERKRYQEMIEKNSRDKSTLMATISHELRTPLNGIIGLSRILLE---GELSAQQREY 278

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L ++ +DI+DL  +D+  ++L  S +  + L++ +         +  I+ 
Sbjct: 279 LKTINISAVSLGHIFSDIIDLEKIDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKF 338

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNG 727
            +  D  L  FV  D  RL QI   +++NA+ F+  G  + LK   RD+  + F +K++G
Sbjct: 339 TIQYDDNLPDFVCVDNARLSQILWNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSG 398

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             I +   + +F  F    N+   + +G G+GL+I +    L GG +++ S
Sbjct: 399 IGIKKSEQRKIFAMFYQSENSQGKKAQGSGIGLAISKRIARLMGGDLTVES 449


>gi|39726389|gb|AAR30137.1| putative histidine kinase HHK2p [Gibberella moniliformis]
          Length = 2072

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 15/224 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1402 LKEAMETKGRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQLDYTNTIQTSANSLI 1458

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       ++ +V + ++T      + +  + +  + ++V
Sbjct: 1459 MIINDILDLSKVDAGMMKLKYEWFHTRSIIEDVNELVSTMAIAKRLELNYLVEADVPAWV 1518

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARDNGDFI--FSVKNNGSSIP 731
              D+ R+ Q+   +  NA+ F+S+G         V   +  D  + +  FSV + G    
Sbjct: 1519 KGDKVRIRQVLLNVTGNAIKFTSEGEVFSRCRVYVAEGSHVDENEIMLEFSVTDTGRGFS 1578

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            ++  + +F  F  +  +   Q  G GLGL I      LHGG ++
Sbjct: 1579 KEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGGSMT 1622


>gi|2218094|gb|AAB71131.1| sensor protein RssA [endosymbiont of Riftia pachyptila]
          Length = 773

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 124/234 (52%), Gaps = 9/234 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A  E    L +++  K+ F+ +VS+ELR+PL +I+  + +L+     +L  +Q + ++ 
Sbjct: 371 QAQREHARQLEESNRYKSEFLANVSHELRTPLNSILLLSKMLREEG-DNLGEQQCKQLKV 429

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  + + L  L+++ILDL+ ++AG   L    I +  ++ E+ + +  +     + +K  
Sbjct: 430 IHEAGSDLKALIDNILDLSRIEAGQAGLVLDQIDIRRMVEELLELVQPQFEAKGLYLKAE 489

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNG 727
            D +L   F++D++++ QI    LSN++ F+++G   IL   RD         F+++++G
Sbjct: 490 FDPQLPDGFLSDQEKVRQILKNFLSNSIKFTAEGGA-ILHVYRDLDSACCPLCFALQDSG 548

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
             IP++  + +F  F        RR  G GLGLSI      L GG + + S ++
Sbjct: 549 IGIPQEKHELIFEAFKQADGSTNRRFGGTGLGLSISRQLAQLLGGEIRLQSQEQ 602


>gi|22095684|sp|Q9SSY6|ETR1_CUCSA RecName: Full=Ethylene receptor 1; AltName: Full=CS-ETR1
 gi|6136814|dbj|BAA85817.1| ethylene receptor CS-ETR1 [Cucumis sativus]
          Length = 740

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 133/264 (50%), Gaps = 35/264 (13%)

Query: 547 DSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL         A+  +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDPLMEQNVALDLARREAETANHARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHAVFKEVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG----STVILKA-- 712
                  + + +     L  F V D +RL+Q    ++ NA+ FS +G    S ++ KA  
Sbjct: 432 PVTLVKKLSLTLHLGLDLPVFAVGDEKRLMQAILNVVGNAVKFSKEGSISISAIVAKAET 491

Query: 713 ------------ARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
                         D+  ++   VK+ GS I P+D+ K +F +F +    G R   G GL
Sbjct: 492 FREIRVPDFHPVPSDSHFYLRVQVKDTGSGISPQDIPK-LFTKF-AQTTVGPRNSCGSGL 549

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ + S   G
Sbjct: 550 GLAICKRFVNLMEGHIWLESEGLG 573


>gi|120554284|ref|YP_958635.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120324133|gb|ABM18448.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 644

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 14/227 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A + K+ F+  +S+ELR+PL  ++G  DL+       L  +QS Y+     S+  
Sbjct: 264 EKAEHASQAKSEFLATMSHELRTPLNGVLGMVDLIHEEP---LTKRQSDYLTTARQSTED 320

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG---K 676
           LL +++DILD A +D G + L+     L  L      S      +  + + +   G   +
Sbjct: 321 LLTVISDILDYARMDNGNLVLDQQAFDLQSLFTNCVASYRHAAEKQGLSLDLQFLGEWPR 380

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPE 732
             + + D  R+ QI + ++ N++ F+S+G   I    L+          SVK++GS IP 
Sbjct: 381 HPAVLGDAPRVRQILAGLIDNSLKFTSEGFVGIRVNWLELENHCVLVQCSVKDSGSGIPA 440

Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           +  +SVFN F      G  R   G GLGLS+V+  + L GGHV + S
Sbjct: 441 ERLQSVFNSF-EQLDAGDNRAHGGTGLGLSLVQRLVELMGGHVQVES 486


>gi|296423107|ref|XP_002841097.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637330|emb|CAZ85288.1| unnamed protein product [Tuber melanosporum]
          Length = 1260

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 126/246 (51%), Gaps = 31/246 (12%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + L     A ++A ++K+ F+  +S+E+R+P+T ++G  ++L  +    L  +Q ++
Sbjct: 717 RENQVLVANESAAKEASKLKSEFLASMSHEIRTPITGVVGMAEILLDTP---LEEEQREF 773

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  S+  LL ++NDILD++ V++G +            + E   ++       N+ +
Sbjct: 774 AENIQRSANALLTVINDILDISKVESGRLD-----------IEEFDHTVDFSEFGGNMTV 822

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI---FSVKN 725
                      + D  R+ QI + +L+N++ F+ +G   + +   +++ D I   F VK+
Sbjct: 823 -----------IGDPGRVRQILTNLLTNSIKFTHEGFVKLAVGVEKEDEDVIVVKFVVKD 871

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I ED+ + +F  F        RR  G GLGL+I ++ ++L GG + ++SS    TT
Sbjct: 872 SGIGIDEDVQQKLFQPFTQADSSTARRFGGTGLGLTISKNLVDLMGGSIGLASSLGAGTT 931

Query: 784 INCRIP 789
            +  IP
Sbjct: 932 AHFIIP 937


>gi|294140286|ref|YP_003556264.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293326755|dbj|BAJ01486.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1214

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 13/261 (4%)

Query: 526 LEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  +IP+     +L   F+ +V++ ++ E  L +  +      + K+ F+  +S+E+RS
Sbjct: 484 VEMKMIPVQLGDEILLTAFLHDVSERMQYETELKQAKKQAELGSKAKSRFLATMSHEIRS 543

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++G  +L+  SKL   N  Q  Y      + T LL+ +NDILD + ++AG M L  
Sbjct: 544 PLNAVLGGVELMLDSKL---NKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLEN 600

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
            +     ++ +V Q +A K +E  + +    +  +   V  D QRL Q+   ++ NA+ F
Sbjct: 601 MSFSPAKMVAQVMQILAPKANEKGVNLATFINRNVPELVKGDAQRLRQVLHNLVDNAIKF 660

Query: 702 SSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           SS G       I  +         +V + G  I     K +F  F  V + H    +G G
Sbjct: 661 SSGGCVSVEMWIPDSHHQEVQLHCAVTDEGIGISLPAQKKLFKEFSQVHDQHNTNYKGTG 720

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I    I + GG + +SS
Sbjct: 721 LGLAICSELIIMMGGEIELSS 741


>gi|262041233|ref|ZP_06014444.1| sensor histidine kinase KdpD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041349|gb|EEW42409.1| sensor histidine kinase KdpD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 895

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 125/263 (47%), Gaps = 7/263 (2%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  S      LT   E  R   E   ++NS +  +S++LR+PLT + 
Sbjct: 624 IPEQQRLLETFTLLVASALERLTLTASEEQARLTSERESLRNSLLAALSHDLRTPLTVLF 683

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L T  L S  SK +     I         LVN++LD+A + +G   L+   + L 
Sbjct: 684 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLHKEWLTLE 742

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    + +   +   +I++ +    +L     D     ++   +L NA  ++   +++
Sbjct: 743 EVVGSALRMLEPSLGGQHIQLDLPDPLQL--VHVDGPLFERVLINLLENAHKYAGARASI 800

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            ++A  D       V +NG  IP    +++F++F          GVGLGL+I ++ +++H
Sbjct: 801 GIRAEADARQLSLEVWDNGPGIPAGQEQTIFDKFARGNKESAIPGVGLGLAICQAIVDVH 860

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +S S+  EG  +    +P +
Sbjct: 861 GGTISASNRPEGGASFRVTLPGE 883


>gi|218258479|ref|ZP_03474846.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225451|gb|EEC98101.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
          Length = 720

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 127/221 (57%), Gaps = 14/221 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + +R+AD++K++F+ ++S+E+R+PL  IIGF+++L  +       ++ ++V+ I+ +S +
Sbjct: 494 QKVREADKLKSAFLANMSHEIRTPLNAIIGFSNILAET---DDKEEKEEFVKIINKNSDL 550

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLG 678
           LL L+ DILD + +++GI+  + +   L ++ +E  Q  A KM E   ++ +I D   L 
Sbjct: 551 LLRLITDILDFSKIESGILDYSLADTSLKEIFHEQYQVHALKMPE---KVSLICDFDALP 607

Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             +   D +R+ Q+ S ++SNA  F+ +GS +        G  +  V + G  I     +
Sbjct: 608 DILIHTDPKRVTQVISNLISNAAKFTEEGS-ISFSYRIVEGYVLIEVIDTGIGISLQHQQ 666

Query: 737 SVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           S+F+RFV  N+    ++G GLGL+I ++ I    G + + S
Sbjct: 667 SIFDRFVKINSF---KQGTGLGLTICKTIIEALNGTIGVDS 704


>gi|218246908|ref|YP_002372279.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
 gi|218167386|gb|ACK66123.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
          Length = 563

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 16/250 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +   + +Q +++E   
Sbjct: 306 LEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLRLV-LDGMADDSQEQQEFLEEAH 364

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LLNL+NDILD+A ++AG M L   ++ L +L   +      +     +       
Sbjct: 365 KSALHLLNLINDILDIAKIEAGKMDLEVGSVELAELFEAIDNFTLPQAQRKRLNYSSKYP 424

Query: 675 GKLGSFV--ADRQRLLQIFSKILSNAMDFSSKG----STVILKAA---RDN---GDFIFS 722
             L   V   + QRLLQ+   ++SNA+ F+  G    +  I+K     RD    G     
Sbjct: 425 PTLTPIVLYGNYQRLLQVMLNLVSNAIKFTHDGGIDITAEIVKKKLYWRDREFPGMIKVR 484

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  +  +    +F +FV    +H     G GLGL+I +  +   GG V   S  EG
Sbjct: 485 VSDTGIGVALEKQAKLFEKFVQVDGSHSKAYGGTGLGLAISQKLVEAMGGQVEFYSMGEG 544

Query: 781 V-TTINCRIP 789
           + +T+   +P
Sbjct: 545 LGSTVTFTVP 554


>gi|149198482|ref|ZP_01875527.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
 gi|149138488|gb|EDM26896.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
          Length = 591

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 6/251 (2%)

Query: 548 SVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNS 604
           SVR  AE+ L         A + K+ F+ ++S+E+R+PL  I+GF + LL+ SK   L  
Sbjct: 190 SVRKDAEKELIAMKLRAEDASKAKSQFLANMSHEIRTPLGAIMGFNEILLENSKSLELPD 249

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
               Y+ YI  S   LL ++N+ILD++ ++    KL    + L      +  +      E
Sbjct: 250 YYPLYLNYIDNSLQYLLKVINNILDISKIEERKFKLKVEDVDLEKFFKNIVYTYKHLAEE 309

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             I     +   +  +V  D  +L Q+   +L NA  F+     V +    D+   I  V
Sbjct: 310 KKINFIYKNTELIAKYVKIDPVKLQQVIINLLDNAFKFTPVNKLVEMTVKTDDQKLIILV 369

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP++  +++F  F  V +++    +G GLGLSI + FI L GG +S+ S     
Sbjct: 370 RDEGIGIPKEYQETIFKVFEQVDDSNTRSYQGTGLGLSISKKFIELMGGIISLESGINQG 429

Query: 782 TTINCRIPSKE 792
           +  +  +P KE
Sbjct: 430 SMFSINLPLKE 440


>gi|114571161|ref|YP_757841.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341623|gb|ABI66903.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 554

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 13/245 (5%)

Query: 538 TMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           T+L  V V   VRA ER L     A R+AD  K++F+ ++S+E+R+P+  ++G  DL + 
Sbjct: 145 TVLGLVCVIGFVRALERMLV----AARQADAAKSAFLANMSHEIRTPMNGVLGLLDLARN 200

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L+++    V    AS+T L+ ++NDILD++ +D G + +      L  L  EV  
Sbjct: 201 GPDGRLDAEG---VVTAHASATALVTVLNDILDVSKLDQGAIVIREEPCDLRGLCEEVIS 257

Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAA 713
               ++   +I + +  D  L   +  D  RL Q+   ++ NA+ F+ +G     +    
Sbjct: 258 LFGVQVSGRDIALVLDYDDSLQNCYALDAVRLRQVMWNLVGNAVKFTERGEVRLAVRPEP 317

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
              G   F V + G  +  +  + +F+RF        R   G GLGL+I      L GG 
Sbjct: 318 GGGGGLQFEVSDTGIGLSAEARERIFDRFAQADDTTTRDFGGTGLGLTICRELTRLMGGE 377

Query: 772 VSISS 776
           +++ S
Sbjct: 378 LAVES 382


>gi|2463029|emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum]
          Length = 928

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    LN+ Q+ Y+  I  S+  LL
Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LNTTQTDYLLTIERSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L+  L++V   +A   HE  + + + I +     +
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NNGSSIPEDMCK 736
           V D  R+ QI + +L NA+ F+ +G+  I   K  +++      V+  + G  I E    
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQS 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 460 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 501


>gi|320354602|ref|YP_004195941.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123104|gb|ADW18650.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1058

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 12/255 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  +   AL    E    A+  K+ F+ ++S+E+R+PL  IIG T L   ++    +
Sbjct: 491 DVTERKQTAEALLRTKEEAEAANRAKSRFLANMSHEIRTPLNAIIGMTHLAMHTR---ED 547

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+ +++  ++ ++  LL L+NDILD++ ++AG + L         L+     ++A +  
Sbjct: 548 DKRQRFLATVAHAADSLLGLLNDILDISKMEAGQLSLATEPFDPRRLVEASVATLAAQAS 607

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNG 717
           E  + +++ +        + D  RL QI   +L NA+ F+  G+  +          DN 
Sbjct: 608 EKGLDLRLHLGPALPDCLLGDALRLRQILLNLLGNAVKFTPAGTITLEAFAEEAEDADNR 667

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            ++   V + G  IP +  + +FNRF    N++  Q  G GLGLSI      L  G +  
Sbjct: 668 VYLHLRVTDTGIGIPAEKLELIFNRFEQADNSYGRQYGGAGLGLSISAQLAALMHGRLWA 727

Query: 775 SSSDEGVTTINCRIP 789
            S +   +T +C IP
Sbjct: 728 ESRENQGSTFHCLIP 742


>gi|304311042|ref|YP_003810640.1| histidine kinase [gamma proteobacterium HdN1]
 gi|301796775|emb|CBL44987.1| histidine kinase [gamma proteobacterium HdN1]
          Length = 542

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 12/238 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R  + L    E+   A   K SF+ ++S+E+R+P+  +I    LL  + L   +++Q
Sbjct: 151 DVRRLNKDLLRARESAEVASRAKASFLSNMSHEIRTPMNGVIASAQLLADTPL---DAEQ 207

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  I+ S+  LL ++ND+LDL+ ++ G M L   +  LN++L E       +  E  
Sbjct: 208 KDLVGLINRSANTLLAVLNDLLDLSKIETGTMTLEKRSFDLNEILQEACDLCIPQAEERG 267

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720
           + + + I +G   S  AD  R+ Q+   +++NA+ F+ +GS V ++   D  D      I
Sbjct: 268 VNVCLTIEEGTPLSMFADPVRIRQVVMNLVANAVKFTPEGS-VTVEVGHDQIDEQRFNVI 326

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             + + G  IP+D    +F+    +A    R     GLGL+I +S ++L  G + + S
Sbjct: 327 VEINDTGIVIPKDRIDKLFDEGDVDAASSARHFGSTGLGLTICKSLVDLMDGVIEVDS 384


>gi|284050788|ref|ZP_06380998.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 462

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 114/214 (53%), Gaps = 16/214 (7%)

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF DLL+++     + + S Y++ I++S   LL L+NDILDL+ ++AG ++L+Y  + +
Sbjct: 1   LGFADLLQST---ITDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNI 57

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++NE++     K  E NI ++V I+     S + D  RL QI   I+ N++ F+  GS
Sbjct: 58  RTIINEIEHIFEQKAKEKNIELQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGS 117

Query: 707 TVILKA--------ARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
             I+ +          ++ +   ++ + G  I PED  K +F+ F  +  +  R+  G G
Sbjct: 118 VKIMASCSQLKPNHPYNSINLKIAITDTGIGISPEDQQK-IFDSFTQSEGQSNRKYGGTG 176

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I E  ++L GG + + S     +T     P
Sbjct: 177 LGLTITERLVHLLGGSIHLESQINQGSTFTFDFP 210


>gi|254796403|ref|YP_003081239.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois]
 gi|254589640|gb|ACT69002.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois]
          Length = 447

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 10/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E++ +    K+ F+ +VS+EL++PL  IIGF+DL++T+++  L ++  +Y   I 
Sbjct: 208 LKKAKESIEEISSQKSQFLANVSHELKTPLNAIIGFSDLIRTAEV--LGTEHREYANDIY 265

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LLNL+NDILD +  +   +++  +   L  L     +   TK  +  I     S+
Sbjct: 266 YSGNHLLNLINDILDFSKSELNNLEIKPTLFDLVRLTETCIRMTTTKRKKIKIVKSFFSN 325

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE-D 733
             L    +D +R+ Q+   ILSN++ F+++   + +   R   +    + +NG  IPE D
Sbjct: 326 KIL--IKSDHKRVKQVILNILSNSIKFTNEDGLIKISIIRLPSEIEIEISDNGVGIPEKD 383

Query: 734 MCK--SVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + K  SVF +  SN    ++  G G+GL + +  + L GG   I S +   T +  R+P 
Sbjct: 384 IAKALSVFGQ--SNTELSRKYDGAGIGLPLSKKLVELMGGAFEIESKEGSGTVVKIRLPY 441

Query: 791 KE 792
           +E
Sbjct: 442 RE 443


>gi|86137265|ref|ZP_01055843.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. MED193]
 gi|85826589|gb|EAQ46786.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. MED193]
          Length = 736

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 134/263 (50%), Gaps = 14/263 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M+ F  + +S   +     + E+  KA+  K+ F+  +S+E+R+P+  ++G  ++L+ + 
Sbjct: 188 MMAFGQLAESYSDDLLRAHQKES--KANRAKSEFLAAMSHEIRTPMNGVLGMVEVLEKTD 245

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L     +Q + +  I  SS  LL +++DILD++ ++AG M+L  + + L  L+     ++
Sbjct: 246 LAP---EQRRILHTIQESSNSLLWIIDDILDVSRIEAGKMELFETPMRLLPLIEGATATL 302

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS------SKGSTVILK 711
               ++  +++ +     L  +F  D  R+ QI   ++ NA+ FS        G   +  
Sbjct: 303 RPHANQMGVQLSLSVQADLPDTFRGDAGRMRQILLNLMGNAIKFSEPLPGEEPGQVKLRV 362

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
             R+ G   F +++NG  I  ++ +++F  F  +A   +R  +G GLGL+IV+  ++  G
Sbjct: 363 EIREAGWIDFVIEDNGIGIEPEVQETIFTPFERSASVAKRMIKGNGLGLTIVQQLVSKMG 422

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G V + S+    +    R+P  E
Sbjct: 423 GAVKVDSTLGEGSVFTVRLPLVE 445


>gi|93006775|ref|YP_581212.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
 gi|92394453|gb|ABE75728.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
          Length = 603

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 44/275 (16%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+    + A+E+K++F+ ++S+E+R+P+  IIG  ++L  + L   + +Q +Y+E I 
Sbjct: 176 LQEQQRNAKYANEMKSAFLANMSHEIRTPMNGIIGMVEMLSDTML---SVEQREYIENIK 232

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++N ILDL+ V+AG M ++   + L+ L NEV    A K  +  + +     
Sbjct: 233 VSNEHLLAIINGILDLSKVEAGKMTIDSIPMNLSSLCNEVVSLFAIKARQRGLVLDYHYT 292

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNG-------------- 717
             L  +V  D  RL Q+   +++NA+ F+ +G   T+ +K  +DN               
Sbjct: 293 ESLSPYVKGDPVRLKQVMVNLVNNAIKFTREGGRVTIDVKHMQDNPCLDNKDCDHAKGNN 352

Query: 718 ----DFIFSVKNN----------------GSSIPEDMCKSVFNRFVSNAHRGQRR---GV 754
               DF    KN+                G  I  +  +++F+ +   A++   R   G 
Sbjct: 353 DSRLDFAIDDKNSTTIHQEMTLCIEVTDTGVGIKSESLEAIFDAY-DQANKYTHRLYGGT 411

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLS+ +S + L GG++ + S     TT    +P
Sbjct: 412 GLGLSVCKSLVELMGGYIEVDSVVGIGTTFRVLLP 446


>gi|330718092|ref|ZP_08312692.1| Signal transduction histidine kinase [Leuconostoc fallax KCTC 3537]
          Length = 345

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 128/259 (49%), Gaps = 8/259 (3%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P A      +NV++ +    A     E  R +++ K+  + ++S++LR+PLT IIG+  L
Sbjct: 85  PFAPRTQALINVSNRIAETTAHLRAEE--RASEQSKDEMITNISHDLRTPLTAIIGYLGL 142

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++     S  + + +Y+      S  + +LV D+ + +        LN + + L+DL  +
Sbjct: 143 VEMGDRLS-EADRRKYIHTAYDKSNQMKSLVEDLFEFSKTQTSDAVLNINQLSLSDLFAQ 201

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S      + NI +  +++  L     D  +L +    ++ NA+ +  +G+T I   A
Sbjct: 202 LLASYEIDARDKNIELMQLTEPNLIIMEGDSDKLARALMNLIINALKYG-EGATFIKLTA 260

Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
           +  GD +   V NNG  IP+   K +F+RF  V ++   +  G GLGL+IV+  I  H G
Sbjct: 261 QVRGDQVEIRVSNNGVPIPQKDLKDIFDRFYRVESSRSSKTGGTGLGLAIVKGIIEQHAG 320

Query: 771 HVSISSSDEGVTTINCRIP 789
            +   S+DE +T+    +P
Sbjct: 321 SIYAQSNDE-ITSFVMTLP 338


>gi|261822787|ref|YP_003260893.1| hybrid sensory histidine kinase BarA [Pectobacterium wasabiae
           WPP163]
 gi|261606800|gb|ACX89286.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae
           WPP163]
          Length = 928

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    LN+ Q+ Y+  I  S+  LL
Sbjct: 284 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LNTTQTDYLLTIERSANNLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N++ND+LD + ++AG + L      L+  L++V   +A   HE  + + + I +     +
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NNGSSIPEDMCK 736
           V D  R+ QI + +L NA+ F+ +G+  I   K  +++      V+  + G  I E    
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQS 459

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 460 QLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQS 501


>gi|182436429|ref|YP_001824148.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178464945|dbj|BAG19465.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 509

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 125/242 (51%), Gaps = 12/242 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   +L +K   +   +E    FV  +S+ELR+PLT I    ++L+  +  +L+   +  
Sbjct: 255 RTAGSLEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLE-DEADTLDPMIAPA 313

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  + + +  L +LV +++++   DAG  +L   T+   D+ ++V   I  +   + + +
Sbjct: 314 VHLVVSETRRLNDLVENLMEVTRFDAGTARLVLDTV---DVADQVTACIDARAWLDAVNL 370

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               D + G  V  D +RL  I + ++ NA+     GS V ++   +  + +  V+++G 
Sbjct: 371 ----DAERGMMVRLDPRRLDVILANLIGNALKHG--GSPVDVRVRTEGEELVIEVRDHGP 424

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPED+   VF+RF  ++A R +  G GLGLSI     ++HGG ++ ++S +G      R
Sbjct: 425 GIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALENAHIHGGDITAANSPDGGAVFELR 484

Query: 788 IP 789
           +P
Sbjct: 485 LP 486


>gi|78186516|ref|YP_374559.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78166418|gb|ABB23516.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 596

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 4/231 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR  + I+  FV  VS+ELR+PLT+I G+ + L    +      Q+ ++  I   S  L 
Sbjct: 357 LRNLERIRRDFVSSVSHELRTPLTSIRGYAETLLDGAMNDPEHAQA-FLRIILQESEQLT 415

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LDL+ +++G ++  Y  + L+ ++    + +     +  ++ ++     L    
Sbjct: 416 ALVNDVLDLSKIESGRIEYTYGPVDLSRVVEHSMEMLRPAFEKKEVKFELSIPPGLPPVQ 475

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
           AD   L  +   +L NA+ +   G+  +   A   GD + F V++NGS I     + +F 
Sbjct: 476 ADEAYLGIVIRNLLDNAVKYVDAGTGKVRFRAFRTGDSVQFDVEDNGSGIAHQDLERIFE 535

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A   Q  G GLGLSIV+  +  H G + + S     +T +  +P
Sbjct: 536 RFYRVDKARSRQLGGTGLGLSIVKHIVLSHKGDIKVRSRLNRGSTFSVTLP 586


>gi|299538495|ref|ZP_07051778.1| hypothetical protein BFZC1_20893 [Lysinibacillus fusiformis ZC1]
 gi|298726082|gb|EFI66674.1| hypothetical protein BFZC1_20893 [Lysinibacillus fusiformis ZC1]
          Length = 375

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 119/230 (51%), Gaps = 5/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A++ KN  V ++++++++PLT+IIG+  LL  ++   +  K+ +YV      S  L  
Sbjct: 147 QEAEQRKNDLVVYLAHDIKTPLTSIIGYLSLLDEARDMPVEQKE-KYVAITLDKSYRLEQ 205

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+  ++   +   + L   +I L+ +L +V       +     +  V  D  + +  A
Sbjct: 206 LINEFFEITRFNLQSIILEKDSIPLHHMLMQVADEFYPLLAPKGQKAIVKLDEAI-TIYA 264

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L ++F+ IL NA+ +S   ST+ + A  +N     S  N G +IP +  K +F +F
Sbjct: 265 DGNKLARVFNNILKNAIAYSEPNSTIEISAQSENNQTFISFTNTGKTIPPEKLKMIFEKF 324

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +A   Q  G GLGL+I    +  HGG ++ +SS++  T     IP+
Sbjct: 325 YRLDSARSTQTGGAGLGLAISNEIVQAHGGTITATSSND-TTVFTVMIPT 373


>gi|261211895|ref|ZP_05926182.1| sensor histidine kinase [Vibrio sp. RC341]
 gi|260839245|gb|EEX65877.1| sensor histidine kinase [Vibrio sp. RC341]
          Length = 733

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 130/244 (53%), Gaps = 19/244 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 332 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 384

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +KQ Q++  +  S   +++L+N+ILD + ++ G  +L+YS   L  ++  +K   ++
Sbjct: 385 --TTKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSS 442

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARD 715
             +E  ++ ++   ISD +   +  D+ RL QI   +LSNA+ F+ KG  S  +++    
Sbjct: 443 LCYEKGLKFQLHSEISDTRW--YYGDKARLRQIVFNLLSNAVKFTEKGFVSVGLMEEKTH 500

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +G+++   V+++G  I ++    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 501 DGNYLTIKVQDSGIGIAQEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGSV 560

Query: 773 SISS 776
            + S
Sbjct: 561 VVHS 564


>gi|237748723|ref|ZP_04579203.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380085|gb|EEO30176.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 580

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ L++  +    A + K+ F+  +S+E+R+P+  IIG T + + S       K    + 
Sbjct: 180 QKKLSQDLQYAENASKEKSEFLSKMSHEIRTPMNGIIGMTKIARMSLEN--REKLEDSLN 237

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  SS  LL L+NDILD+A +++G ++L      L  +L+ ++   A +  + NI  ++
Sbjct: 238 KLDMSSQFLLALINDILDMARIESGKVELVEKEFNLLQMLDNIEIMFAQRAADKNIDFRL 297

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI---FSVK 724
           I  G  G + + D  R+ QI   I+SNA+ F+  G  +IL+  +   D   ++   F V 
Sbjct: 298 IKRGLTGQALIGDELRITQIIINIVSNAIKFTPSGGEIILEVRQTPTDTSRYVNLEFIVS 357

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  + E+  K +F  F        Q  G GLGL+I ++ + +  G +S++S     +T
Sbjct: 358 DTGIGMSEEFMKHMFEPFEQEKQTVRQYGGTGLGLAICQNLVKMMHGTMSVNSLPGEGST 417

Query: 784 INCRI 788
              R+
Sbjct: 418 FTVRL 422


>gi|220908589|ref|YP_002483900.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865200|gb|ACL45539.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 781

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 148/297 (49%), Gaps = 31/297 (10%)

Query: 506 SFDDERKSLQGTLELL-----SDSVLEYSIIPLPNAQTMLTFVNVTDSV----RAERALT 556
           S   E+ S Q T EL+     S+ +LE+    L  A T + F+  T ++    RA R + 
Sbjct: 248 SIPIEQLSPQSTFELVLLDNRSEQILEFYRNLL--ASTGVVFLAGTFAIFISFRASRTIA 305

Query: 557 EKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    LR+A E        K+ F+ ++S+ELR+PL  I+GF  +L+ S    L+ K+   
Sbjct: 306 QSQAELRQAKEAADTANQAKSEFLANMSHELRTPLNGILGFAQILEQS--AELSEKELNS 363

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I    + LLNL+NDILDL+ ++A  ++L    + L +LL+   +    +  +  I++
Sbjct: 364 VKVIHECGSHLLNLINDILDLSKIEARKLELKPGKVYLFELLHSAIEMCRIRAEQKGIQL 423

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI----F 721
               D  L + +  D  RL Q+   +L+NA+ F+  G     V+L++   +   I    F
Sbjct: 424 IYEPDPALPAIIYTDGIRLKQVLINLLNNAIKFTDHGQVTFRVVLQSLPPDSTQIVCLRF 483

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V++ G  I     + +F  F  VS+ +R    G GLGL++ ++ +   G  + + S
Sbjct: 484 EVEDTGIGILSGQLEKIFIPFERVSDPNR-YVEGTGLGLALSQTIVQHLGSQIQVKS 539


>gi|170686162|ref|ZP_02877384.1| sensory box histidine kinase [Bacillus anthracis str. A0465]
 gi|170669859|gb|EDT20600.1| sensory box histidine kinase [Bacillus anthracis str. A0465]
          Length = 363

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 127/239 (53%), Gaps = 13/239 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QYV  
Sbjct: 123 KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQYVSI 181

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   S  L N V+D+L+   ++   ++L  S + +   + ++      ++ + ++   + 
Sbjct: 182 LKRKSYELKNQVDDLLEYCQINYREIELQKSVVNMKAFIEQIMIDFVPQLDDADMSFCIK 241

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  L     D   ++++F  ++SN++ +   G  + ++ ++ + +    +KN G  IP 
Sbjct: 242 GDKGL-HVEMDVALMVRLFENVISNSIMYGKDGKQIWIQISKRDMNVEIEIKNFGQCIPN 300

Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
           +    VF +F    +RG++       G G+GL+I  S   LH G +++ S+D E V TI
Sbjct: 301 ENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDIAVRSNDKETVFTI 355


>gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella
           benthica KT99]
 gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella
           benthica KT99]
          Length = 1235

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS-----------PGTHIRNIAATC 487
            +D + +G+  +  D +  + NPA+ S+   + N              P   IR      
Sbjct: 588 AMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALVSTIDELIHPDDRIR------ 641

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            + Y E    D   A    F    KS Q    L    V+E++    P  + + T  ++T 
Sbjct: 642 VQEYREQYLDDPVGAFDIEFRMRGKSGQYHWLLSRGRVVEFTADNQPK-RMVGTHKDITR 700

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++   L  KQ 
Sbjct: 701 HKSNEVALLEAKQDAESANVYKSEFLANMSHEIRTPMNAIIG---MLQLAERTELTPKQR 757

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A K  +  +
Sbjct: 758 DYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKSQQKGV 817

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720
            + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+        
Sbjct: 818 ELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGEIEL--GCEDVGERDHRITLK 875

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I ++   S+F+ F        R+  G GLGLSI +  +++ GG + + S
Sbjct: 876 FWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGQMQVQS 933


>gi|153871596|ref|ZP_02000728.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
 gi|152071937|gb|EDN69271.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
          Length = 565

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 22/229 (9%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   + +E KN F+   +++LR+PL  I+G+  +L+   L  L+ +Q  Y+  I  +S  
Sbjct: 307 EEANRQNERKNQFLGMAAHDLRNPLGVILGYGQMLQEEALEILDEEQLDYLNRIHNASQF 366

Query: 620 LLNLVNDILDLATVDAG----------IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            LNLVN++LD+A +++G          +M+     I LN  L E KQ          I++
Sbjct: 367 TLNLVNNLLDVAKIESGNLALELEQTCLMRTITEAISLNRFLAESKQ----------IQL 416

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               D  L     D  ++ Q+ + ++SNA+ +S   + V + A R   D + SV + G  
Sbjct: 417 NFNYDENLPEMTVDASKIQQVINNLISNAIKYSHPQTKVQIHATRKQNDVLISVTDEGQG 476

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP+     +F  F   + +        GLGL I    +  H G + + S
Sbjct: 477 IPKSELDKLFQPFSKTSVKSTAGESSTGLGLLICRQIVEAHSGKIWVES 525


>gi|89056552|ref|YP_512003.1| putative PAS/PAC sensor protein [Jannaschia sp. CCS1]
 gi|88866101|gb|ABD56978.1| DivL protein [Jannaschia sp. CCS1]
          Length = 549

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 158/390 (40%), Gaps = 34/390 (8%)

Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSL------DGIYSELA 179
           +L+K    LR  G +F +     +D  + I GR+        +L+L      DG   +  
Sbjct: 95  ELTKRLAGLRDRGDAFLVDGRIGSD-PVFIAGRIEEE----DVLTLSVGPAGDGAGRQTV 149

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           ET      L   +   +   D     +W  D  G + WAN  Y +  E   +   +A G 
Sbjct: 150 ETA-TLNALQTELLDLRAALDCGVVPMWREDDQGHVTWANAPYFELVER--LRGGQAAGW 206

Query: 240 S-RKLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNKSYKIVR-----VLNSFGEA 289
              ++F   + +      IS   LE          +      Y++ R      L+ F   
Sbjct: 207 PLPRIFAAGLDQIPTEGTISRCKLEMP--------DRDEPTWYEVSRDHLPGGLSLFTAQ 258

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
                V  E  + + L  T +    L V +A+FD+ R L   N + V L +    FL+  
Sbjct: 259 PADRLVRAETGLREFLQTTTKTFAALPVGLAVFDRKRQLVTFNPALVALTQAGAQFLSQR 318

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSN 407
           P     L+ LR   ++PE  ++ +W+  I  + + +E  T++  W LP G+T  V+   +
Sbjct: 319 PDLRSFLDQLREKKRMPEPRDYLSWRNEIAQLEEGAENGTYRQLWELPEGKTFRVMGRPH 378

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           P G   +MFE+++ +V L  ++   +++    +D +   +AVF  DG +  +N  +  LW
Sbjct: 379 PDGAIAFMFEDISAEVSLTRQFRADLEMFQAVLDAVPAAIAVFQADGAMIGANEGYGQLW 438

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             +   L+   H+       +     S  W
Sbjct: 439 GQDPQVLAQMPHLSQACTDWAEGCKPSQVW 468


>gi|86137305|ref|ZP_01055882.1| sensor histidine kinase [Roseobacter sp. MED193]
 gi|85825640|gb|EAQ45838.1| sensor histidine kinase [Roseobacter sp. MED193]
          Length = 897

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 8/234 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R L   NE L +  + K++F+  VS+ELR+P+T+I  F+++L+      L  K+ +Y
Sbjct: 650 RTARQLRVSNEKLTQISQQKDAFLSQVSHELRTPMTSIRAFSEILRDDSDMPLVEKR-RY 708

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I   +  L  L+ND+LDL+ +++G + LN S   LN++L+    +++T +  ++  I
Sbjct: 709 ATIIHDEALRLTRLLNDLLDLSVLESGQVSLNMSAGTLNEVLD---HAVSTALAGSDHPI 765

Query: 670 KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNN 726
           +V  D K       +D  RL Q+F  +++NA  +  +  + + ++  R  G+      +N
Sbjct: 766 QVHRDPKSEDIRISSDLDRLAQVFINLIANAQKYCDADAAELTIQVRRSLGEIWVDFIDN 825

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           GS +P D  + +F +F S     +  G GLGL+I    +    G +S  S  +G
Sbjct: 826 GSGVPADHQQLIFEKF-SRVSPERAGGAGLGLAICREIMQRLNGDISYLSGQKG 878


>gi|84388536|ref|ZP_00991083.1| sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84377085|gb|EAP93956.1| sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 817

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 125/228 (54%), Gaps = 13/228 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     LNS+Q ++++ +  S   ++ L+N+I
Sbjct: 342 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNSEQEKHLKSLYESGDHMMTLLNEI 397

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G + L+ +   L+ ++  +     T   E  ++ KV S+   G  + +D+ R
Sbjct: 398 LDFSKIEQGRLDLDETRFPLDSIIGSINSVYFTLSSEKGLQFKVYSEVPSGRWYFSDKAR 457

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFV 743
           L QI   +L+NA+ F+S+G   V LK   +  D   S  V++ G  I ++  K +F  F 
Sbjct: 458 LRQILFNLLNNAVKFTSRGFVEVYLKEVIEGSDTYLSIRVRDTGIGISKEAQKRIFKPFE 517

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
                  RR  G GLGL+IV+    L  G +++ +S+EG+ T+ + R+
Sbjct: 518 QAESSTTRRFGGTGLGLAIVKKIAQLMDGSITV-TSEEGIGTSFDVRL 564


>gi|332704672|ref|ZP_08424760.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 939

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 124/242 (51%), Gaps = 11/242 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT++V+   AL +  +    A++ K+ F+ ++S+E+R+P+  I+G  +L   + L   +
Sbjct: 542 DVTEAVQIREALRQAKQEADAANKAKSEFLANMSHEIRTPMNGIMGMIEL---ALLKDPS 598

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                 +E    S+  LL+++NDILDL+ ++AG ++L    +VL  ++ +V  +++    
Sbjct: 599 CPARGNLELAQKSAHHLLDIINDILDLSKIEAGKLELKSRPLVLRRIVEDVVGTLSLAAS 658

Query: 664 ENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI 720
              + +   I        + D  RL Q+   ++ NA+ F+ +G  +  +    R +G  I
Sbjct: 659 RKGVSMHHYIESDVPERLMGDEMRLRQVLMNLVGNAVKFTHEGRILVNVETVLRTDGGRI 718

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F+V + G  IPE+    +F  F       Q +  G GLGL+I +  + L GG VS+ 
Sbjct: 719 CLRFTVSDTGIGIPEERLGDIFESFSQANIETQTKYGGTGLGLTISKLLVELMGGEVSVR 778

Query: 776 SS 777
           S+
Sbjct: 779 ST 780


>gi|332711422|ref|ZP_08431354.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332349971|gb|EGJ29579.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1443

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 21/254 (8%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            F +++D  +AE+AL +       A+  K+ FV ++S+ELR+PL  I+G+  +L+     +
Sbjct: 1076 FRDISDRKQAEQALKQAKVDAEVANRAKSEFVANMSHELRTPLNGILGYAQILQEEP--N 1133

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L++ Q + +  I  S   LL L+NDILDL+ ++A  M+L+         L  + + +   
Sbjct: 1134 LSATQKEQLSIIQQSGQHLLTLLNDILDLSKIEAIKMELDVRDFQFPKFLEGIVEIVVIS 1193

Query: 662  MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------- 709
              + N+  +      L  FV  D  RL Q+   +L NA+ F+  G               
Sbjct: 1194 AKQKNLSFRYEFLSPLPEFVKGDEIRLRQVLMNLLGNAVKFTDTGGVTFKVGYLGCSELN 1253

Query: 710  ----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
                L   +      F + + G  IP      +F  F  V N  R Q  G GLGLSI + 
Sbjct: 1254 VDRSLTEKQGTQKMRFVIADTGIGIPPKQLAEIFLPFHQVGNTDR-QVNGTGLGLSISKR 1312

Query: 764  FINLHGGHVSISSS 777
               L G  + + S+
Sbjct: 1313 LAELMGSELKVKST 1326


>gi|319952894|ref|YP_004164161.1| histidine kinase [Cellulophaga algicola DSM 14237]
 gi|319421554|gb|ADV48663.1| histidine kinase [Cellulophaga algicola DSM 14237]
          Length = 512

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 13/229 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           KN  L + ++ KNSF+++ S+ELR+PLT+II  T +L  ++   L ++Q   V ++  S+
Sbjct: 123 KNAELEEREKFKNSFIRNFSHELRNPLTSIISITKILSGTE---LTNQQQDMVTFLQQSN 179

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           + L  L++DIL ++ + +G +KL  +   L+ L + ++ +  TK  E +I  +V  D K+
Sbjct: 180 SNLKQLLDDILSISMISSGRLKLRENIFSLSQLFDLLQFTYKTKASERDIDFEVKVDKKI 239

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPE 732
              V  DR RL Q+ + +L NA  ++  G   +   L   R N  +  F V + G  +  
Sbjct: 240 TDLVEGDRLRLFQVLTNLLDNAFKYTQSGKITLDIQLNQKRANRLNLRFEVIDTGVGVSL 299

Query: 733 DMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHGGHVSISSS 777
           +   ++F  F S  +  Q     +G GLGLSIV+  + L    + + SS
Sbjct: 300 ENQITIFESF-SQLNGDQSSDLPKGTGLGLSIVKGLLKLMDSEIKVVSS 347


>gi|228908281|ref|ZP_04072126.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|228851322|gb|EEM96131.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
          Length = 312

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     +    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311


>gi|104779398|ref|YP_605896.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila
           L48]
 gi|95108385|emb|CAK13079.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila
           L48]
          Length = 592

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 154/355 (43%), Gaps = 27/355 (7%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNP-AFRSL-WKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            +D + +G+ +    GR++  NP A R L W        PG    ++A    R   E   
Sbjct: 260 VLDSIDDGLLIIDRQGRLEHLNPVAQRQLGW-------DPGRLGMSLAEALQRPELEQQL 312

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERA 554
             +      S D     L   LE+  +S +L YS+ P+ + Q  +L  V V   V  +RA
Sbjct: 313 RQVLRG--GSLDRPPDDL--NLEVDEESRLLTYSLTPVSHPQGPILGAVMVLHDVTEQRA 368

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                      + +++ FV   S+ELR+P+T +     LL+        ++++  ++ I+
Sbjct: 369 F----------ERVRSEFVLRASHELRTPVTGMHMAFGLLRERISFPAGARENDLLDTIA 418

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  L+ND+L+ +   +G+ KL  +   L++L    +   A +     I +    +
Sbjct: 419 EEMQRLTQLINDLLNFSRYQSGLQKLELAPCALDELFERAQARFAEQAANKQIELLRELE 478

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD  +L ++   +L NA+  ++ G  + L A R     I SV++NG  I    
Sbjct: 479 PPLPRIQADAAQLDRVLDNLLHNAIRHTASGGRIRLHARRHAERVIISVEDNGEGIAYGQ 538

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  FV    +  + G GLGL++ +  + LHGG + + S     T     +P
Sbjct: 539 QGRIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVFSRPGQGTQFYMALP 591


>gi|94267479|ref|ZP_01290888.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451988|gb|EAT02695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 529

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 170/372 (45%), Gaps = 42/372 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I ++ +G+ V     RI ++NPA   ++     R + G ++  +   C   + +S G  +
Sbjct: 157 IGNIPDGLLVTNDRARITMANPALGGMF-----REAAGGNL--VGRDCREVFADSLGP-M 208

Query: 500 FAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            AAI TS   +++++   +EL      S +  +I      Q    F+     VR    +T
Sbjct: 209 LAAISTS---QQQAVTVQVELAGGRIGSAIGTAIYRGGAGQE--EFIGYLIVVRD---IT 260

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG---SLNSKQSQYVE-- 611
            + E  R    +K+ FV  VS+ELR+PLT+++GF  L+     G    +  +Q   VE  
Sbjct: 261 HQKEIER----MKDDFVSAVSHELRTPLTSVLGFARLIAKKLEGVILPVVPRQDPRVERA 316

Query: 612 ---------YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                     I      L  L+N++LDL+ ++AG ++     +   +++     +     
Sbjct: 317 VRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEPVTAEEIVKRALDATTGLF 376

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FI 720
            E    +    + +L     DR R++Q+   +++NA  F+  G  V ++A R  G+   +
Sbjct: 377 GEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFTDHGR-VTVRARRAAGEEAVL 435

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V ++G  I  +  +SVF +F  V +    + +G GLGL I +  +  HGG V+  S+ 
Sbjct: 436 FEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPICKEIVEYHGGTVTAESTP 495

Query: 779 EGVTTINCRIPS 790
              +T    +P+
Sbjct: 496 GAGSTFRFTLPT 507


>gi|94313527|ref|YP_586736.1| histidine protein kinase [Cupriavidus metallidurans CH34]
 gi|93357379|gb|ABF11467.1| histidine protein kinase [Cupriavidus metallidurans CH34]
          Length = 1309

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 14/234 (5%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+SF+  +S+E+R+P+  ++G  +LL  +   SL  +QS  V  +  S++ LL +++DIL
Sbjct: 798  KDSFLAMMSHEIRTPMNGVLGLAELLSHT---SLTPEQSATVGMMGDSASALLQILDDIL 854

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            D + ++AG + +    + + +L +     +AT+ HE  + +++     + + V  D  RL
Sbjct: 855  DYSKIEAGRIDIESRPLDIRELCDCTIGVLATRAHEKGLHLRLHVGADVAAVVLGDSVRL 914

Query: 688  LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             Q+   +LSNA+ F+  G    S  +++         + V + G  I       +F+ FV
Sbjct: 915  RQVLFNLLSNAIKFTESGMVSVSAEVVQETETAQTLRWRVTDTGIGIEPQNQSRLFDPFV 974

Query: 744  SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT---INCRIPSKE 792
                   RR  G GLGL+I    + L GG +++  S+ G+ T   +   +P KE
Sbjct: 975  QADTSTTRRFGGTGLGLAICRRLVQLMGGRITL-KSEPGIGTQVEVELSLPVKE 1027


>gi|319953826|ref|YP_004165093.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM
           14237]
 gi|319422486|gb|ADV49595.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM
           14237]
          Length = 724

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 10/224 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A  KA E K +F+  VS+ELR+PL  + G T LL      + +  Q ++++ +  S   
Sbjct: 344 DAAVKAMETKTNFLSTVSHELRTPLYAVTGLTHLLLEE---NPSESQKEHLKALKFSGDY 400

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-G 678
           LL+ +NDIL L  +DA  ++   +   L  +L+EV  S+     EN  +I +  D  +  
Sbjct: 401 LLSFINDILQLNKIDADKLEAVNTEFSLKKVLSEVISSLQQSAKENKTKISLDYDDTIPK 460

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDM 734
           S ++D  +L QI   ++ N + F+ KG   +    L    D+    F VK+ G  I ED 
Sbjct: 461 SLLSDSMKLSQILINLVGNGLKFTKKGEVTVIAKLLSKVEDDVVIYFEVKDTGIGISEDQ 520

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             ++F  F   + +  R   G GLGL+IV+S + L    + + S
Sbjct: 521 ITNIFESFEQGSIQINREYGGTGLGLTIVKSLLGLFNSKIDLKS 564


>gi|171059132|ref|YP_001791481.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776577|gb|ACB34716.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 9/215 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+SF+ ++S+E+R+PL  I+G   LL+ S   +L+++Q+  +  I  ++  LL L++D+L
Sbjct: 249 KSSFLANMSHEIRTPLNAILGLARLLRRS---TLDAQQADRIAKIDDAAHHLLGLISDVL 305

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ V+AG   L+     L  L+ +V  ++A +     + +++ +         D  RL 
Sbjct: 306 DLSKVEAGRQALDADDFELGALMAQVGNAVAHQAAAKGLALQIQAPPAPLWLRGDAGRLR 365

Query: 689 QIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS 744
           Q     ++NA+ F+  G     V  +AA +    + F V+++G  I  +    +FN F  
Sbjct: 366 QALLNYMANAVKFTPTGWVRFDVQCEAAGERAVRLHFDVRDSGIGIAPEHLPRLFNDFEQ 425

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
                 RR  G GLGL++  S + L GG V + S+
Sbjct: 426 GDKSTTRRFGGTGLGLAVTRSLVELMGGSVGVDSA 460


>gi|148977411|ref|ZP_01814011.1| sensor histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145963363|gb|EDK28628.1| sensor histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 827

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 13/228 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     LN++Q ++++ +  S   ++ L+N+I
Sbjct: 342 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LNAEQEKHLKSLYESGDHMMTLLNEI 397

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G + L+ +   L+ ++  +     T   E  ++ KV S+   G  + +D+ R
Sbjct: 398 LDFSKIEQGRLDLDETRFPLDSIIGSINSVYYTLSSEKGLQFKVYSEVPSGRWYFSDKAR 457

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFV 743
           L QI   +L+NA+ F+S+G   V LK   +  D   S  V++ G  I ++  K +F  F 
Sbjct: 458 LRQILFNLLNNAVKFTSRGFVEVYLKEMVEGSDTYLSIRVRDTGIGISKEAQKRIFKPFE 517

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
                  RR  G GLGL+IV+    L  G++++ +S+EG+ T+ + R+
Sbjct: 518 QAESSTTRRFGGTGLGLAIVKKITQLMDGNITV-TSEEGIGTSFDVRL 564


>gi|126741267|ref|ZP_01756946.1| sensor histidine kinase [Roseobacter sp. SK209-2-6]
 gi|126717672|gb|EBA14395.1| sensor histidine kinase [Roseobacter sp. SK209-2-6]
          Length = 896

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 8/234 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R L E NE L +  E K++F+  VS+ELR+P+T+I  F+++L+         K S+Y
Sbjct: 649 RTARKLRETNEKLTQISEQKDAFLSQVSHELRTPMTSIRAFSEILRDDAELPPEDK-SRY 707

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I   +  L  L+ND+LDL+ +++G + LN  +    +L++ +  +++T +  N   +
Sbjct: 708 AGIIHDEALRLTRLLNDLLDLSVLESGQVHLNLGS---GNLMDVLDHAVSTALAGNGRTL 764

Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNN 726
           KV+ D +    +  +D  RL Q+F  +++NA  +  ++  T+ +  +    +F     +N
Sbjct: 765 KVLRDVQNEDLMIFSDLDRLSQVFINLIANAQKYCDAEVPTLRISVSEGQKEFFIQFSDN 824

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           GS IP +  + +F +F S     +  G GLGL+I    +    G V      EG
Sbjct: 825 GSGIPAEFQQLIFEKF-SRVSPERAGGAGLGLAICREIMQRLDGDVFYQPGVEG 877


>gi|94263810|ref|ZP_01287616.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455821|gb|EAT05988.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 970

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 9/252 (3%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           PLP     + F N+T+  +AE  L    +    A   K+ F+ ++++E R+P+  +I  T
Sbjct: 582 PLPGNHVGIAFENITERKKAEEELRTAKQQADSATLAKSRFLANMNHEFRTPMNAVINLT 641

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L    +   LN +Q  Y+  +  +   LL ++NDILD + ++AG ++L+     L  L+
Sbjct: 642 RLALEEE--ELNPRQRDYLGKVLRAGEDLLVIINDILDFSKIEAGKLELDPVPFGLRGLI 699

Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-- 708
           ++V + ++   H+  I+ +V +++      V D  RL Q+   +  N + F+ +G  +  
Sbjct: 700 DDVVRPLSPNAHDKAIKFRVELAEELPERLVGDATRLRQVLFNLADNGIKFTEQGEVLLK 759

Query: 709 --ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
             +LK   D     F V ++G  I     + +   F        RR  G GLGL+I +  
Sbjct: 760 VQLLKRQGDQVTLAFMVSDSGIGISAAEQQRLGEPFSQADDSISRRYGGTGLGLAITKQL 819

Query: 765 INLHGGHVSISS 776
           + L G  + + S
Sbjct: 820 LVLMGSELEVES 831


>gi|3123890|gb|AAC38448.1| sensor kinase [Vibrio cholerae]
          Length = 1146

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K          +V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIAVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIEVKSEFEQGTQIQVNLP 841


>gi|326938736|gb|AEA14632.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 896

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 602 DTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IPS
Sbjct: 722 EGSTFTVFIPS 732


>gi|322435323|ref|YP_004217535.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321163050|gb|ADW68755.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 458

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 168/367 (45%), Gaps = 36/367 (9%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           VQ  LET   +  +++   +D + + V      GRI+ +N       + ++  L PG + 
Sbjct: 97  VQGSLETAAESRRQLEA-LLDSMQDAVVAVDAAGRIQWTNE------RMQKMMLLPGGYF 149

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                            D+   +  + +D   +++ +  L+   + E +  P+P    + 
Sbjct: 150 TGAVRVGHALVQTVRDPDVLECVRVALEDTAVAVRRSTSLVPGRIYEVNASPMPGGGAVA 209

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +VT     ER  T+K+            FV +VS+ELR+PLT+I G+ + L   + G
Sbjct: 210 VLHDVTRIEEVER--TQKD------------FVANVSHELRTPLTSITGYVETLLDHEAG 255

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            ++ +  +++  I  ++T +  L  D+L +A V+A  ++L+ + +  + L+ E    +  
Sbjct: 256 -ISPQGREFLGTILKNATRMNRLTEDLLVMARVEAATVELSPAPVPADLLVREAVAGMKG 314

Query: 661 KMHENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS---SKGSTVILKAARD 715
            + EN   + I  I+D ++    AD   ++Q+ S ++ NA+ +    + G T ++ +AR+
Sbjct: 315 LVQENEGVLEIGTITDCQV---FADHDAVMQVLSNLIENAIKYGQPKAGGGTRVVISARE 371

Query: 716 NG---DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
                D + FSV++ G  I  +    +F RF  V      +  G GLGLSIV   +   G
Sbjct: 372 VAAPYDAVEFSVRDFGQGIASEHLNRIFERFYRVDKTRSRESGGTGLGLSIVRHMVQAQG 431

Query: 770 GHVSISS 776
           G +   S
Sbjct: 432 GTIRAES 438


>gi|229171763|ref|ZP_04299335.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3]
 gi|228611660|gb|EEK68910.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3]
          Length = 896

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 31/259 (11%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-- 672
           +S   LL L+NDILDL+ V+AG + + +    ++D+        A  MH+N + I     
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDM--------AANMHQNFLHIAAKKN 593

Query: 673 -------SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD--- 718
                  SD     F  D +R+ QI   +LSNA  F+ KGS  +    ++    + D   
Sbjct: 594 VEFMIEDSDAIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTHLSDDMQS 653

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                   SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG 
Sbjct: 654 ISNDWMTISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGW 713

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++ S     +T    IP+
Sbjct: 714 ITLESHVGEGSTFTVYIPN 732


>gi|225420050|ref|ZP_03762353.1| hypothetical protein CLOSTASPAR_06393 [Clostridium asparagiforme
           DSM 15981]
 gi|225041306|gb|EEG51552.1| hypothetical protein CLOSTASPAR_06393 [Clostridium asparagiforme
           DSM 15981]
          Length = 374

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVE 611
           R L EK    R+++  KN  + +V+++LR+PLT+IIG+ +LL   +++      Q +Y+E
Sbjct: 127 RQLMEKE---RESERTKNELITNVAHDLRTPLTSIIGYLELLAGNTRIDP--EMQHKYIE 181

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                S  L  L+ D+     ++ G M ++ + + L  LL ++ +       E N+   +
Sbjct: 182 IAYGKSKRLEKLIEDLFGFTKLNYGKMSMHVAQLDLVKLLGQLLEEAYPNFAEKNLSYDL 241

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            S+       AD   L ++F  ++ NA+ + + G  V+++          SV N G  IP
Sbjct: 242 QSNVPAKMISADGNLLARLFDNLIGNAIKYGADGKRVLVQIFAGEEVVTVSVTNYGYVIP 301

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788
            D    +FN+F  V  +      G GLGL+I +  +++HGG + ++S   G V T+  ++
Sbjct: 302 PDELPLIFNKFYRVERSRSSSTGGTGLGLAIAKEIVDMHGGTIGVTSDLNGTVFTVKLQV 361


>gi|218550493|ref|YP_002384284.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ATCC 35469]
 gi|218358034|emb|CAQ90680.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia fergusonii ATCC 35469]
 gi|324115186|gb|EGC09150.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325498791|gb|EGC96650.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ECD227]
          Length = 778

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 128/248 (51%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    LN++Q +Y
Sbjct: 264 RDITERKHYQDALEQASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLNAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     L +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPIDFTGFLADLENLSGLQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL Q+   ++SNA+ F+ +G  V ++   D G+ + F V ++G
Sbjct: 381 VMEPTLPLPHQVITDGTRLRQVLWNLISNAVKFTQQGK-VEVRVRYDKGEMLHFEVADSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS--SDEGVT 782
             IP++    +F  +  V ++  G+   G G+GL++        GG +S+SS      V 
Sbjct: 440 IGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLARDMGGDISVSSVPGQGSVF 499

Query: 783 TINCRIPS 790
           T+  R P+
Sbjct: 500 TLTVRAPA 507


>gi|218548556|ref|YP_002382347.1| hybrid sensory histidine kinase TorS [Escherichia fergusonii ATCC
           35469]
 gi|218356097|emb|CAQ88714.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia fergusonii ATCC 35469]
          Length = 914

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +      S Q   +  I+ S   LL +
Sbjct: 441 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP---ALSTQRDDLRAITDSGESLLTI 497

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        L+    Q ++ ++    IR+   I+D    + 
Sbjct: 498 LNDILDYSAIEAGGKNVSVSDEPFEPRPLMESNLQLMSGRVKGRPIRLATAIADDVPTAL 557

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 558 MGDPRRIRQVITNLLSNALRFTDEGQ-IILRSRTDGEQWLLEVEDSGCGIDPAKLTEIFQ 616

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 617 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 663


>gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 951

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 11/254 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T+   AE  L +       A+  K+ F+ ++S+E+R+P+  I GF +LL++S   
Sbjct: 299 TAQDITEQRIAEAELYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESS--- 355

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+ +Q ++V    ++S ILLN++NDILD + ++A  + L   +  L  ++ +       
Sbjct: 356 NLSLEQREFVREAKSASDILLNIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFVP 415

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
           K  E  I++  I D  +    + D  RL QI + +LSN + F+  G   I     +   +
Sbjct: 416 KTLEKGIQLYTIIDPTIPDEVIGDPSRLKQILNNLLSNGVKFTDAGEIAIKVDYFEEENE 475

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F V++ G  I     + +F  F        R+  G GLGLSI    +N+  G ++
Sbjct: 476 IALLTFEVRDTGIGISGKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNMMDGEIT 535

Query: 774 ISSS-DEGVTTINC 786
           + S  D+G T   C
Sbjct: 536 VDSVLDKGSTFRFC 549


>gi|325108405|ref|YP_004269473.1| histidine kinase [Planctomyces brasiliensis DSM 5305]
 gi|324968673|gb|ADY59451.1| histidine kinase [Planctomyces brasiliensis DSM 5305]
          Length = 646

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 19/238 (7%)

Query: 560 EALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL---GSLNSKQSQYV 610
           E  R+ADE+      K+ F+  + +ELR+PL+ +    +LL+ S++    ++    S  +
Sbjct: 259 ELQRRADELSLASRRKDEFLAMLGHELRNPLSTLSVGIELLRQSQVVNEEAIQQMGSDPL 318

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I   +  +  LV+D+LD++ +  G ++L  + I L  LL +V       + E N  ++
Sbjct: 319 EIIGEQTRHITRLVDDLLDVSRITRGRIELRPACIDLAPLLRDVVTRNKGLISERNHTLE 378

Query: 671 -VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVK 724
             I DG    F+ AD  R+ Q+F  +  NA+ ++  G T+ L A     R     +  + 
Sbjct: 379 NQIGDGPY--FIHADSTRIRQVFENLYVNAIKYTDPGGTIGLHAESTVFRGGPAVLVKIY 436

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           +NG  + E+M K +F+ FV +     R   G+G+GL++V+  + LH GHV + S   G
Sbjct: 437 DNGIGLSEEMQKCIFDLFVQDGRSLDRAQGGLGIGLTLVQKLVQLHDGHVEVHSDGRG 494


>gi|300869423|ref|ZP_07114008.1| hypothetical protein OSCI_4080002 [Oscillatoria sp. PCC 6506]
 gi|300332553|emb|CBN59206.1| hypothetical protein OSCI_4080002 [Oscillatoria sp. PCC 6506]
          Length = 1748

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 97/167 (58%), Gaps = 8/167 (4%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E+ L   N  L +A  +K+ F+ ++S+ELR+PL  I+G T+ L+    G +N  Q + +E
Sbjct: 1478 EQQLERTNAELIRATRLKDEFLANMSHELRTPLNAILGMTEGLQDGVFGIVNESQIKALE 1537

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL----LNEVKQSIATKMHENNI 667
             I  S T LL L+NDILD+A +++G M+L Y+++ +N L    L  +KQ    K  + +I
Sbjct: 1538 TIEHSGTHLLELINDILDIAKIESGQMELEYTSVSINYLCQSSLAFIKQQALQKHLQVDI 1597

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +I +     L     D +R+ Q+   +L+NA+ F+ +G  + L+ +R
Sbjct: 1598 KIPL----NLPDLWVDERRIRQVLINLLNNAVKFTPEGGHITLEVSR 1640


>gi|295707301|ref|YP_003600376.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294804960|gb|ADF42026.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 749

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 112/211 (53%), Gaps = 2/211 (0%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K++ +K   + +VS++LR+PLT+I+ +T LLK+  L S   +Q  YVE I   S  L  L
Sbjct: 528 KSERLKTELITNVSHDLRTPLTSIMTYTALLKSQDLTS--DEQHAYVEIIDRKSKRLQTL 585

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+ +++ + +G ++L+   I +N LL++        + ++ ++ ++ S  K      D
Sbjct: 586 IDDLFEVSKMASGNVELHKDKIDINQLLHQALAEYNEAIEDSTLQFRIQSLEKPLFATVD 645

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+L ++F  ++ N + +S + + V +     N     + KN       +    +F RF 
Sbjct: 646 GQKLWRVFDNLIENILKYSLEQTRVYISVQEINEQVKLTFKNVSKYELNEQADELFERFK 705

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 Q  G GLGL+I +S I+LHGG ++I
Sbjct: 706 RGDTSRQTDGSGLGLAIAKSIIDLHGGEMNI 736


>gi|262369862|ref|ZP_06063189.1| sensor protein gacS [Acinetobacter johnsonii SH046]
 gi|262314901|gb|EEY95941.1| sensor protein gacS [Acinetobacter johnsonii SH046]
          Length = 937

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K+ F+ ++S+ELR+PL +I GF  LL   +  +LN+ Q+ Y++ I  SS  LL L+
Sbjct: 285 ASQSKSVFLANISHELRTPLNSIDGFIHLL--LRQDNLNNDQNLYLQTIRKSSAHLLALI 342

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L+ +T  L + + +V   ++    + +I +    +D      V D
Sbjct: 343 NDVLDFSKIDAGKIELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYADNVPKHVVGD 402

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++A  +  D       FSV+++G  +     K +
Sbjct: 403 ALRFKQILTNLISNAIKFTPDGE-IIVRARMEQDDIGQCLLHFSVQDSGIGLSGTDRKKL 461

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 462 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPT 508


>gi|195940455|ref|ZP_03085837.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4024]
          Length = 777

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 131/242 (54%), Gaps = 30/242 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L S+Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLN----EVKQSIATK 661
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L DL N    + +Q   + 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENLSGLQAQQKGLSF 380

Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           + E  + +  KV++DG          RL QI   ++SNA+ F+ KG  V ++   D GD 
Sbjct: 381 VMEPTLPLPHKVVTDGT---------RLRQILWNLISNAVKFTQKGQ-VAVRIRYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP++    +F  +  V ++H G+   G G+GL++ +      GG ++++
Sbjct: 431 LHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKSMGGDITVA 490

Query: 776 SS 777
           S 
Sbjct: 491 SQ 492


>gi|117618265|ref|YP_855448.1| aerobic respiration control sensor protein ArcB [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117559672|gb|ABK36620.1| sensor histidine kinase/response regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 770

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 12/233 (5%)

Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +    L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ KQ Q 
Sbjct: 264 RDITERKQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDT---PLDPKQHQQ 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+DL  +D   +++  + I L   L+E++     +  +  + +
Sbjct: 321 LKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETLSRIQAEQKGLYL 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI--FSV 723
               DG +  FV AD  RL Q+   ++ NA+ F+ +G   +      A   G     F V
Sbjct: 381 HFDRDGDVPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTVRCLTHPADTPGKLALHFEV 440

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ G  IP    + +F  +     +    G G+GL++    +   GG + + S
Sbjct: 441 EDTGVGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGQLYVDS 493


>gi|110834714|ref|YP_693573.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647825|emb|CAL17301.1| sensor histidine kinase/response regulator, putative [Alcanivorax
           borkumensis SK2]
          Length = 646

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 144/297 (48%), Gaps = 32/297 (10%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKAD-- 566
           R+ LQG L  L D++ E                   +  R ++  A+TE  +A R A   
Sbjct: 215 RRRLQGELGELQDNINE--------------LAGALEGARRKQQAAMTELQDAHRHAQTA 260

Query: 567 -EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K+ F+  +S+ELR+P+  ++G   LL+ +   + N +Q +Y +    S+  LL+++N
Sbjct: 261 SQAKSDFLAMMSHELRTPMNGVLGMLQLLEET---AQNDEQHEYTQAALESTGHLLDVIN 317

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--D 683
           DILD + ++AG M L+ S   +  LL     +         + +++     L   VA  D
Sbjct: 318 DILDFSRIEAGRMDLDPSFFEILPLLKNCVATFRYVAESKGLYLQLEGAEALAGQVARSD 377

Query: 684 RQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVF 739
             RL Q+ S ++SNA+ F+ +G  TV +  +  +GD++    +V + G  IP +    +F
Sbjct: 378 PTRLRQVLSNLISNAVKFTQEGGVTVSVSVSPVHGDWLDLSIAVADTGIGIPREKRAGLF 437

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG--VTTINCRIPSKE 792
             F        RR  G GLGL+I      + GG +++   +EG  + T++ R+  +E
Sbjct: 438 KAFSQIDSSTSRRFGGTGLGLAIARKLSEMLGGTLTVDGREEGGSIFTLSLRLLCRE 494


>gi|94263606|ref|ZP_01287416.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456026|gb|EAT06177.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 529

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 170/372 (45%), Gaps = 42/372 (11%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I ++ +G+ V     RI ++NPA   ++     R + G ++  +   C   + +S G  +
Sbjct: 157 IGNIPDGLLVTNDRARITMANPALGGMF-----REAAGGNL--VGRDCREVFADSLGP-M 208

Query: 500 FAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            AAI TS   +++++   +EL      S +  +I      Q    F+     VR    +T
Sbjct: 209 LAAISTS---QQQAVTVQVELAGGRIGSAIGTAIYRGGAGQE--EFIGYLIVVRD---IT 260

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG---SLNSKQSQYVE-- 611
            + E  R    +K+ FV  VS+ELR+PLT+++GF  L+     G    +  +Q   VE  
Sbjct: 261 HQKEIER----MKDDFVSAVSHELRTPLTSVLGFARLIAKKLEGVILPVVPRQDPRVERA 316

Query: 612 ---------YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                     I      L  L+N++LDL+ ++AG ++     +   +++     +     
Sbjct: 317 VRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEPVTAEEIVKRALDATTGLF 376

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FI 720
            E    +    + +L     DR R++Q+   +++NA  F+  G  V ++A R  G+   +
Sbjct: 377 GEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFTDHGR-VTVRARRAAGEEAVL 435

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V ++G  I  +  +SVF +F  V +    + +G GLGL I +  +  HGG V+  S+ 
Sbjct: 436 FEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPICKEIVEYHGGTVTAESTP 495

Query: 779 EGVTTINCRIPS 790
              +T    +P+
Sbjct: 496 GAGSTFRFTLPT 507


>gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio angustum S14]
 gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium angustum S14]
          Length = 1114

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + +KN  L+ AD++K+ F+   S+ELR+PL  ++G  + L     G +   Q + +E 
Sbjct: 427 KIIKQKNNELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVKDSQRRQLEM 486

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G + ++   I L+  +  V +  +  +    +RI   
Sbjct: 487 IINSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQ 546

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L    AD QRL Q+   ++ NA+ ++S+G  +I+ A          V + G  IP 
Sbjct: 547 IPANLPLVDADEQRLEQVLYNLVGNAIKYTSEGK-IIISATVLEQQLRVQVVDTGQGIPS 605

Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
           +  + +F   + +N++    R+G GLGLSI    I L GG + +SS
Sbjct: 606 EQLEHIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSS 651


>gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
 gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
          Length = 1132

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + +KN  L+ AD++K+ F+   S+ELR+PL  ++G  + L     G +   Q + +E 
Sbjct: 441 KIIKQKNNELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVKDSQRRQLEM 500

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G + ++   I L+  +  V +  +  +    +RI   
Sbjct: 501 IINSGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQ 560

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L    AD QRL Q+   ++ NA+ ++S+G  +I+ A          V + G  IP 
Sbjct: 561 IPANLPLVDADEQRLEQVLYNLVGNAIKYTSEGK-IIISATVLEQQLRVQVVDTGQGIPS 619

Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
           +  + +F   + +N++    R+G GLGLSI    I L GG + +SS
Sbjct: 620 EQLEHIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSS 665


>gi|312892347|ref|ZP_07751842.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311295131|gb|EFQ72305.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1043

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T    AE+ L +  E   + +  K+ F+  +S+E+R+PL  +IG ++LL      +
Sbjct: 649 LIDITAKKNAEQQLIDAKEEALQLNTAKDMFISVMSHEIRTPLNAVIGISNLLIED---N 705

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  Q + ++ +  S+  L+ L+ND+LD   V+ G ++L  + + + +L++ V  S+  K
Sbjct: 706 PSHSQQENLKILKFSADNLMTLINDVLDFTKVETGNVELEKTNLNIRELVDSVVNSLQYK 765

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF 719
               +I I+   D +L    + D+ R+ QI   ++ N++ F+ KG  T+ LK        
Sbjct: 766 AEAKHIYIRTDIDEQLPLDILGDKTRICQILLNLVGNSVKFTEKGGVTIDLKLIEQTAGQ 825

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           +   F V + G  IP D   +VF  F   A     R   G GLGL+I +  I LH   ++
Sbjct: 826 VRIRFEVSDTGIGIPPDKLNTVFESF-KQAQTDTTRLYGGTGLGLAITKRLIELHDSRIN 884

Query: 774 ISS 776
           + S
Sbjct: 885 VES 887


>gi|296449930|ref|ZP_06891694.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
 gi|296261200|gb|EFH08031.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
          Length = 441

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 36/343 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +S G+     +G I L N   + + K+E N+L  G +I  +         E +       
Sbjct: 95  ISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK-------EEEILKQILR 147

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEK 558
            I S D+E  ++        D V +  + P  L N   ++  + VN+ D       +T+K
Sbjct: 148 FIGSKDNETANITTK----DDIVYKIKVDPVYLQNTNNVIIGSIVNIED-------ITKK 196

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++ ++++E I + S 
Sbjct: 197 ----VKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR-NRFLEIIESESD 251

Query: 619 ILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            L  L++DIL L+ V   D  +M+     +V+ D+  EV +       E NI +    D 
Sbjct: 252 RLKRLIDDILLLSFVENKDTLLME----NVVVYDVFKEVYEITQHSASEKNIEVLYKCDD 307

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +NG  IP++  
Sbjct: 308 KSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGIPKEDV 367

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +F RF  V  A      G GLGL+I +  +    G + + S
Sbjct: 368 ERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKS 410


>gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 473

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 9/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTIL 620
           L++ D  +  FV  VS+ELR+PL+ I G+T+ +     G +  ++ + Y++ I      L
Sbjct: 244 LKRMDAARRDFVAAVSHELRTPLSIIQGYTEAILD---GMVTPEEMKLYLDTIREEVERL 300

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679
             L +++LDL  ++ G +K+    + L ++ ++V          + +   V +S   L  
Sbjct: 301 KRLTDELLDLRRLETGAIKIRQEKLDLGEIASQVAARFQAAPEASKLHFHVEVSPRSL-- 358

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D+ RL Q+   +L NA  F+  G +V L+      + + +V++ G  IP +    ++
Sbjct: 359 VLGDKDRLEQVIINLLDNAFRFTPAGGSVTLRVESAPEEVVLTVQDTGPGIPPEELPYIW 418

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F  +     R   G GLGL+IV+  + LHGG V + S     +T    +P+
Sbjct: 419 EKFYRSDKARARTTGGSGLGLAIVKQIVELHGGRVEVQSRPGEGSTFKVTLPA 471


>gi|119351157|gb|ABL63473.1| ethylene receptor [Coffea pseudozanguebariae]
          Length = 740

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 314 ESTRAGDLLMEQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+     L+ L  EV   I 
Sbjct: 374 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIEPFDLHGLFKEVLNLIK 430

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  + + D +RL+QI   ++ NA+ FS +G   I         
Sbjct: 431 PIASVKKLFVTLSMSSDLPEYAIGDEKRLMQIMLNVVGNAVKFSREGGISISASVAKSDS 490

Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+  R         DN  ++   VK+ GS I P+D+ K +F +F  +     +   G GL
Sbjct: 491 LRDPRAPDFSPMHSDNHFYLRVQVKDTGSGIMPQDIPK-LFTKFAQSQSLAAKNSGGSGL 549

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ + S   G
Sbjct: 550 GLAICKRFVNLMDGHIWLESEGLG 573


>gi|325263100|ref|ZP_08129835.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031493|gb|EGB92773.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 959

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 18/239 (7%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV----EYISASST 618
           + A+  K+ F+  +S+++R+P+  IIG       S +G L ++ ++ V    + I ASS 
Sbjct: 444 KAANRAKSDFLSRMSHDIRTPMNAIIGM------STIGQLKNEDTKTVKDCFQKIDASSR 497

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL- 677
            LL+L+NDILD++ ++ G M++ +        ++EV Q I  +  E  +   +     L 
Sbjct: 498 YLLSLINDILDMSRIENGKMEIAHEIFDFKAFVDEVNQIIYPQTVEKEVDYDMRCREPLE 557

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI---FSVKNNGSSIPE 732
             ++ D  R+ QI   +LSN++ F+  G   ++ +K  R    F    F V++ G  + +
Sbjct: 558 AQYIGDSLRMKQILMNLLSNSLKFTPSGGYISIDIKEERRTNGFAYMEFVVQDTGIGMSD 617

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + VF  F        R   G GLGLSIV + + L GG + + S     TT    +P
Sbjct: 618 QFMQKVFLPFEQEEPGNARNNVGSGLGLSIVYNLVQLMGGSIQVKSEKNAGTTFIVSVP 676


>gi|313683119|ref|YP_004060857.1| hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155979|gb|ADR34657.1| Hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 758

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 8/239 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +K +    A + K  F+ ++S+E+R+PL  I+GF  LL+     + N +  QY++ IS
Sbjct: 140 IYQKEQEAINASKAKEYFLSNMSHEIRTPLNAILGFVSLLRDE---TTNPRYQQYLDIIS 196

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+++NDILD + + +G   ++     ++D ++   +      +  NI +    D
Sbjct: 197 NSGENLLHIINDILDFSKLRSGEFMIDPQPFNIHDEISHTMELFVPGANSKNITLTSFID 256

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +    VAD  R+ QI    LSNA+ FS     + ++A  D G    SV++ G  I   
Sbjct: 257 PTIAYEIVADALRIKQIVGNFLSNAIKFSHHAGAIHVEARCDEGILSLSVRDQGIGIVLA 316

Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F+ F S A  G  +   G GLGLSI +   +  GG + + S+    +    +IP
Sbjct: 317 DQERIFDAF-SQAQEGSMKVNGGSGLGLSICKQLAHHMGGVIELESTVGKGSLFTLKIP 374


>gi|283850955|ref|ZP_06368240.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573601|gb|EFC21576.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 545

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 24/256 (9%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------------TSKLGS 601
           L + NE LR+ D +K+ F+  V+++LR+PLT+++GF  L +             + KL  
Sbjct: 269 LADANERLRELDALKSGFLATVTHDLRTPLTSVLGFAKLTRRDFIKDFMPFSEVSEKLHR 328

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             ++ +  +  I      L  LVND LDL+ +++G +  N  T+   +++     ++  +
Sbjct: 329 KGTRIADNLAIIENEGARLTRLVNDFLDLSKIESGHLAWNDQTVDPTEVVRAAVAAVGGE 388

Query: 662 MHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD 718
            +E N R+ ++ D    L     D  RL+Q+   +L+NA   + +G  V L A R   G 
Sbjct: 389 -YEQNERLALVVDIPETLPPLRLDPDRLMQVLVNLLTNAARHTGEGE-VTLSARRLSTGR 446

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-----QRRGVGLGLSIVESFINLHGGHVS 773
             F V + G  IPE+  + +F++F     RG      RRG GLGL+I +  +  + G + 
Sbjct: 447 LEFRVADTGPGIPEEERERIFDKFYQT-RRGDTMASDRRGTGLGLAICKHIVERYQGGIR 505

Query: 774 ISSSDEGVTTINCRIP 789
             +     T+    +P
Sbjct: 506 AEARTPRGTSFVVELP 521


>gi|288940892|ref|YP_003443132.1| Osmosensitive K channel His kinase sensor [Allochromatium vinosum
           DSM 180]
 gi|288896264|gb|ADC62100.1| Osmosensitive K channel His kinase sensor [Allochromatium vinosum
           DSM 180]
          Length = 891

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 6/236 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+ +   + + ++++ +  VS++LR+PL ++IG    L++         + + ++ + + 
Sbjct: 646 EQAKVAEETERLRSALLSSVSHDLRTPLASMIGAASSLRSLDEALSTDDRRELLDSVISE 705

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L   + ++LD+  +  G +KL    I ++D+LN   +     +H   + I+ I  G 
Sbjct: 706 GERLNRYIQNLLDMTRLGHGTLKLERDWIGIDDILNSALRRTRELLHHCRL-IRHIEPG- 763

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L         + Q    ++ NA  FS +GS V + A RD+G+ + +V + G  IP D  +
Sbjct: 764 LPLLYVHPALIEQALVNVIENAAKFSPEGSEVRVAAMRDDGELLITVADEGPGIPADHRE 823

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            VFN F +     RG + G GLGL+I    I  HGG +       G  TTI   +P
Sbjct: 824 KVFNMFFTGGEGDRG-KHGSGLGLAICSGMIGAHGGRIEALPGPGGRGTTIATHLP 878


>gi|238786791|ref|ZP_04630592.1| Signal transduction histidine-protein kinase barA [Yersinia
           frederiksenii ATCC 33641]
 gi|238725159|gb|EEQ16798.1| Signal transduction histidine-protein kinase barA [Yersinia
           frederiksenii ATCC 33641]
          Length = 911

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 13/229 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 277 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 332

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + + ++       
Sbjct: 333 CIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQV 392

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+ +G+  IL A +         +  + + G  I E    
Sbjct: 393 IGDAMRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTTQQVTIVVEIHDTGIGISESQQS 452

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            +F  F        RR  G GLGL I E  +   GG ++  S  D G T
Sbjct: 453 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGEINFHSQVDRGST 501


>gi|218438104|ref|YP_002376433.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218170832|gb|ACK69565.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 373

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 123/241 (51%), Gaps = 9/241 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+A+    E  ++  E+K+ F   V++E R+P+T I+G   LL+   L     ++ +Y+
Sbjct: 125 AEKAIRVALEKEKELSELKSRFWSMVAHEFRTPMTTILGSAQLLEELHLQLPEERRREYL 184

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDLLNEVKQSIATKMHENN 666
             I  S   + NL+ND+L +  V++G +K   + + L     DL++E++ +  +     N
Sbjct: 185 SLIQQSIRSMENLLNDVLCVGRVESGSLKFEPALLDLEQFCRDLIDEMQFNAGS-----N 239

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            ++     G       D++ L  I   +LSNA+ +S +G  + L  +    +    +K++
Sbjct: 240 YQLIFQHQGNCEQICLDKKLLRHILVNLLSNAIKYSPEGGKIYLTISCQEEEVTIQIKDS 299

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  IP +  K +F  F    + G   G GLGL++V+  ++LHGG ++I+S     TT   
Sbjct: 300 GIGIPLENQKHLFEPFQRAMNVGTIPGTGLGLTMVKKCLDLHGGEITINSEPGIGTTATV 359

Query: 787 R 787
           R
Sbjct: 360 R 360


>gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 975

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615
           ++ E L + D  K +F  +VS+E R+PLT ++G   D+L +   G+L    ++ ++ +  
Sbjct: 319 KRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLAS---GTLPEAAARELDVVHR 375

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++T LL LVN +LD + ++AG ++ ++  + L     ++  S  +      + + V    
Sbjct: 376 NATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSFRSVAERAGLTLTVDCPP 435

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
               F  DR+   +I   +LSNA  F+ +G+  +   AR  G     + + G+ IP +  
Sbjct: 436 LPAPFYVDREMWEKIVLNLLSNAFKFTFQGTITVRLRAR-TGQAWLEILDTGTGIPPEDL 494

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +F RF  V  A      G G+GL++V+    L GG V + S
Sbjct: 495 PHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVES 537



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 19/250 (7%)

Query: 549 VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-----SL 602
           +R E +L E + EAL++A ++++ F+   S+EL++PL       +L++ S LG     SL
Sbjct: 733 MRRESSLQEARAEALKRAVQVRDEFLSIASHELKTPLMAFRLQLELIERS-LGPESRLSL 791

Query: 603 NSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            S+ S     ++      LN LV  +LD++ +  G + L+   + L +++ E  + +   
Sbjct: 792 ASRLS-----VAGRQVQRLNTLVETLLDVSQLSMGRLMLHLEEVDLAEVVGETVEQLRGS 846

Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +      + V  +  L G +  DR R  ++   +L NA+ +  +G  + ++A ++ G   
Sbjct: 847 LERAGCSLTVEVERPLVGRY--DRVRFERVVMNLLDNALKYG-EGKPLRVRAWKEQGISR 903

Query: 721 FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            +V + G  I PED  + +F RF       Q  G+GLGL I    +  HGGH+ + S+  
Sbjct: 904 LTVADQGMGISPEDQAR-IFERFERAVPGRQYGGLGLGLWIARQVVEAHGGHIQVDSTPG 962

Query: 780 GVTTINCRIP 789
             TT   +IP
Sbjct: 963 QGTTFTVQIP 972


>gi|293409372|ref|ZP_06652948.1| TMAO reductase system sensor TorS [Escherichia coli B354]
 gi|291469840|gb|EFF12324.1| TMAO reductase system sensor TorS [Escherichia coli B354]
          Length = 904

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLSDNP--ALNT-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    I +   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGEQWLVEVEDSGCGIDPTKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|283783077|ref|YP_003373831.1| sensor histidine kinase/response regulator [Gardnerella vaginalis
           409-05]
 gi|298253499|ref|ZP_06977289.1| signal transduction histidine kinase [Gardnerella vaginalis 5-1]
 gi|283441178|gb|ADB13644.1| sensor histidine kinase/response regulator [Gardnerella vaginalis
           409-05]
 gi|297532266|gb|EFH71154.1| signal transduction histidine kinase [Gardnerella vaginalis 5-1]
          Length = 391

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  E  E L  AD+++   + +VS+ELR+P++       +L+    G ++   S  +E I
Sbjct: 149 AFNEMAEELEHADQMRRELIANVSHELRTPVS---ALQAMLENLADGVVDPTPSN-MEAI 204

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV 671
              +  L +L+  +LDL+ V+AG   LN ++    D ++E+ +   IA   H +NI +++
Sbjct: 205 LNQTHRLADLITFLLDLSRVEAGAESLNITSFNFTDFIDEIIEPLEIADSGHNHNIEVQI 264

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
             + +L     D+ RL Q+F+ I+SNA+  S  G+ V++ A         I +V N G  
Sbjct: 265 NDEIEL---TGDQARLSQLFTNIISNALKHSDDGTRVLISAHINHSQNSVICNVVNFGEQ 321

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           IP++    +F RFV    R   +  G GLGLSI      LH G V +     G
Sbjct: 322 IPQEDRADIFRRFVKGNQRIGTESGGTGLGLSIARWAAQLHHGTVKVVDDKRG 374


>gi|229145141|ref|ZP_04273533.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228638339|gb|EEK94777.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
          Length = 312

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311


>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 844

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 29/246 (11%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L   N+ L +A   K+ F+ ++S+E+R+P+  +IG T LL  ++L     +Q +YVE  
Sbjct: 172 SLVALNQKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALLLDTEL---TDEQREYVEAT 228

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            +S+  +L ++NDILD + +++G + L      L+  + E    +A K  E ++ +   +
Sbjct: 229 RSSADAMLTIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSV 288

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA------RDNGD------- 718
            D      V D  RL QI   ++ NA+ F+++G   I +K A      RD          
Sbjct: 289 DDAIPKILVGDVTRLRQILVNLIGNAVKFTNEGEVFIQVKPAPKHFNDRDRSASSITGPD 348

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGG 770
                FSV++ G  IP D    +F  F      +  H G   G GLGL+I +    L GG
Sbjct: 349 MWMLQFSVRDTGVGIPIDKQHRLFKSFQQVDASTTRHYG---GTGLGLAICKKLSELMGG 405

Query: 771 HVSISS 776
            + + S
Sbjct: 406 DIQVES 411


>gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 734

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 127/238 (53%), Gaps = 13/238 (5%)

Query: 552 ERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           E+ L E +NEAL +A  +K+SF+ ++S+E+R+P+  I+G T++L      S   K+   +
Sbjct: 216 EKQLVEARNEAL-QASHMKSSFLANMSHEIRTPMNGILGMTEVLLDQNPESGIKKK---I 271

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S+  LL+L+N ILDL+ +++G ++L  S      L+ EV  ++        + + 
Sbjct: 272 QIIRESALNLLSLINGILDLSKIESGKLELEESYFEPRKLVQEVINTVEYSAKSKGLDLH 331

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKN 725
             +S+    +F  D  RL QI   +L NA+ FSS+G+ ++I+ + R +         VK+
Sbjct: 332 ASVSEQTPAAFSGDVLRLRQILINLLGNAIKFSSEGTVSLIVNSFRSDQSRTMLQIQVKD 391

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEG 780
            G  + E   K +F+ F        R+  G GLGLSI +  + L  G + + S  +EG
Sbjct: 392 QGLGMDEATLKKIFSPFEQADKSTTRKFGGTGLGLSITKQLVELMNGKIEVESKPNEG 449


>gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus 10329]
          Length = 873

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 165/354 (46%), Gaps = 28/354 (7%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---SPGTHIRN---IAATCSRY 490
            E  +H  + + +  PDG I   N AF  L +     +   SPG  ++     A T +  
Sbjct: 242 AEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALL 301

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV----NVT 546
                        I ++   R+     LEL        S +   N + +L F+    ++T
Sbjct: 302 SQSVRSHSPVRVEILNYTKSRRPYWVELEL--------SPVFDENGE-LLRFIAVERDIT 352

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D    E+ L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L    L + N ++
Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEIL----LENENRRE 408

Query: 607 S-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + +  +  S+  L+ ++NDILD + V+AG + L      L  L+       A +  + 
Sbjct: 409 PRELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           N+++ V     + +  V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FSV 
Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESEHGFDFSVS 527

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S
Sbjct: 528 DTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHS 581


>gi|323691918|ref|ZP_08106170.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum
           WAL-14673]
 gi|323504034|gb|EGB19844.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum
           WAL-14673]
          Length = 935

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 129/250 (51%), Gaps = 19/250 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKN----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL- 593
           ++  + V  S+R + A+ +K+    EA  KA   K+ F+  +S+E+R+P+  I+G T L 
Sbjct: 529 VIMVITVIASLRVKNAIMQKDVIRAEAENKA---KSEFLSRMSHEIRTPMNAIVGTTALI 585

Query: 594 -LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            +K     S+    ++    + A+S  LL L+NDILD++ +D G++ +      L  LL+
Sbjct: 586 AMKDDIPESIKGNLAK----LKATSQYLLGLINDILDMSRIDNGMLSIAEEDFSLQQLLD 641

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-- 710
           E+   + ++     I +   +  +      D  RL Q+   ++SNA+ F+  G TV L  
Sbjct: 642 ELCSMMQSQSKAREIALCCETGFRHSDLKGDAIRLKQVLMNLVSNAIKFTPPGGTVHLTV 701

Query: 711 --KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766
              AA D    ++F V + G  I  +  + +F  FV + A+R + +G GLGL I ++ + 
Sbjct: 702 EETAATDLQAVYLFKVTDTGIGIRAEDLERIFESFVQTGANRMRSQGTGLGLPISQNIVQ 761

Query: 767 LHGGHVSISS 776
           L GG + + S
Sbjct: 762 LMGGTLRVKS 771


>gi|315125227|ref|YP_004067230.1| hypothetical protein PSM_A0119 [Pseudoalteromonas sp. SM9913]
 gi|315013740|gb|ADT67078.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 940

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 12/223 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASST 618
           + LR+A+E+K+ F+ ++S+E+R+PLT I+  TD L +   G   ++Q Q  +  I   S 
Sbjct: 469 QELREANEVKSQFLANISHEIRTPLTAILAQTDDLIS---GQYKAEQLQDELRVIQRQSE 525

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L +L+ND+LDL+ ++A  ++LN S   +  L+N+V    + +     + +  I + +LG
Sbjct: 526 HLRSLINDVLDLSKIEANRLELNISCFDMVRLINDVHAMFSPQTKAKGLSL--ILESQLG 583

Query: 679 SFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D  R+ QI   + +NA+ F+ KG   I  +  D G  +F +++ G  +     
Sbjct: 584 DTYFTRLDLTRVKQILINLCANAIKFTHKGHVTIAVSKTDQG-LLFCIQDTGIGMSSSQL 642

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           K +F  F    +   RR  G GLGLS+ +    + GG++S+ S
Sbjct: 643 KLIFECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQS 685


>gi|300697811|ref|YP_003748472.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
 gi|299074535|emb|CBJ54086.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
          Length = 675

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 126/257 (49%), Gaps = 13/257 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +++T+  +AE   T+  EA  +A E       +K+ F+  VS+ELR+PL  ++G+  LL 
Sbjct: 265 IDITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA 324

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    ++   +  I  S+   ++L++D+LD++ + +G + L    + L D+L   +
Sbjct: 325 MRPYDEAMFRRG--LAAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           ++I     E  I I       +     D  RL Q+F  +L+NA+ F+ +G  + +     
Sbjct: 383 ETIEPMAREKQITIDT-EYPPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHAS 441

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
               + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH G ++
Sbjct: 442 PEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRIT 501

Query: 774 ISSSDEGV-TTINCRIP 789
            +S+   + TT+   +P
Sbjct: 502 ATSNGTNLGTTMTVTLP 518


>gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
 gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
          Length = 996

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 131/264 (49%), Gaps = 15/264 (5%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           S +V+EY  +       ML  +N  +T   +AE  L     A   A++ K++F+ ++S+E
Sbjct: 193 SAAVVEYQGV---GDTLMLVGINRDITRQRQAEATLQAAKLAAENANQAKSAFLANMSHE 249

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  I+G   LL  S    L  +Q+ Y     A++  LL L+NDILD + ++AG M+
Sbjct: 250 LRTPLNAILGMLALLLKS---GLTHRQADYATKSEAAAQALLRLLNDILDYSKIEAGKME 306

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNA 698
           L      L  LL ++   +A+  H+  + +    D +L  + + D  RL Q+   +  NA
Sbjct: 307 LEAEPFNLCALLQDLAVILASNSHKKPVEVLFDIDPRLPRWLIGDSLRLQQVLINLGGNA 366

Query: 699 MDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + F+ +G  V    +++    N    F V++ G  I  +  + +F+ F        RR  
Sbjct: 367 LKFTEQGEVVLFIHLIEQDAQNATLHFGVRDTGIGIAPEKQRLIFSGFSQAEASITRRFG 426

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGLSI + F+ + G  + + S
Sbjct: 427 GTGLGLSISQRFVAMMGSTLELES 450


>gi|317132021|ref|YP_004091335.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470000|gb|ADU26604.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 502

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 18/233 (7%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A      +L   +E++ SFV +VS+ELR+P+T+I GF D +    +   + KQ  Y++ +
Sbjct: 263 AFNNMAASLVSLEEMRRSFVANVSHELRTPMTSIAGFIDGILDGTIP--HEKQEYYLQIV 320

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S     L  LV  +L++A ++AG + +  S   + + +  V       + E ++ ++ + 
Sbjct: 321 SDEVKRLSRLVYSLLNIARIEAGEVHIQQSRFDVAETIRRVIVGFEYAIDEKHLTVEGMD 380

Query: 674 DGKLGSFVADRQRLL--------QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           D      +ADRQ ++        QI   ++ NA+ FS++G TV +  A        SVKN
Sbjct: 381 D------LADRQLMVMADPDVTHQILFNLVENAVKFSNEGGTVSITTASRGHRVYVSVKN 434

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  IP      VF RF     +    ++GVGLGL IV S + L G  +++ S
Sbjct: 435 TGMGIPAQDLPHVFERFYKTDKSRSTDKKGVGLGLYIVRSMLLLQGQDITVKS 487


>gi|228943732|ref|ZP_04106134.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976242|ref|ZP_04136721.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977716|ref|ZP_04138102.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228782014|gb|EEM30206.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228783487|gb|EEM31587.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228815951|gb|EEM62174.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 883

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 589 DTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 780 GVTTINCRIPS 790
             +T    IPS
Sbjct: 709 EGSTFTVFIPS 719


>gi|229055111|ref|ZP_04195540.1| hypothetical protein bcere0026_2460 [Bacillus cereus AH603]
 gi|228721233|gb|EEL72760.1| hypothetical protein bcere0026_2460 [Bacillus cereus AH603]
          Length = 281

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           RK+ E +   + ++S+++R+PLT+IIG+ D LK     S   KQ +Y+E +   S  L +
Sbjct: 47  RKSQEARKQLLSNISHDIRTPLTSIIGYIDALKDDVAASEVEKQ-EYLEILYKKSNDLKH 105

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++V+        +A
Sbjct: 106 LVDEIFNMAKLDADEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPESTSPIIA 165

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I   ++ NA+     G  V ++    N ++   + + G  IP+   ++VF R 
Sbjct: 166 DHLSLIRIIGNLIKNAIHHGKAGKIVGVELLETNTEYEILIWDKGPGIPKHDLQNVFKRM 225

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GG + + S     TT    +P
Sbjct: 226 YRSEQSRNPSYGGSGLGLSISKALVEKNGGRIWVDSIPWERTTFGFSVP 274


>gi|226326092|ref|ZP_03801610.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758]
 gi|225205634|gb|EEG87988.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758]
          Length = 394

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E  R+A E K  F+ ++S+++R+P+  IIGF+DLL   K      K  +Y+  I 
Sbjct: 3   LKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLL--GKNLDNEEKVREYLGKIK 60

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S  IL+ +++ +L++A +++G   L      L++L   V   + + +    I   + ++
Sbjct: 61  SSGNILMTIIDQVLEVARIESGTSILKTEAANLSELFYSVNTVLESDIQMKGIHCSIDTN 120

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSS 729
            +      D+ +L +I+  I+SNA+ ++  G  + +     N D     ++F  ++ G  
Sbjct: 121 VQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCEDTGIG 180

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +    +F+ F     A   +  G GLGLSIV+SF+ L  G + + S     T     
Sbjct: 181 MASEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESKPGKGTKFTVE 240

Query: 788 IP 789
           IP
Sbjct: 241 IP 242


>gi|295101501|emb|CBK99046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 978

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 143/264 (54%), Gaps = 19/264 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L   + T   +  +AL++   A   A+  K++F+ ++S+++R+P+  IIGFT L     
Sbjct: 438 ILVMSDRTADKQVNQALSDAVAAAETANRAKSAFLSNMSHDIRTPMNAIIGFTTL----A 493

Query: 599 LGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + +++ K+    Y+    ASS+ LL+L+ND+LD++ +++G + L    + L+++L+++K 
Sbjct: 494 ISNIDDKERVKDYLAKTLASSSHLLSLINDVLDMSRIESGKLHLEEVEVNLSEVLHDLKT 553

Query: 657 SIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712
            ++ +++   + + + + D        D+ RL QI   +LSNA+ F+  G TV ++    
Sbjct: 554 IVSGQIYAKQLELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQL 613

Query: 713 ---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFI 765
               R  G + F +K+NG  +  +  K +F  F     S   R Q  G GLG++I ++ +
Sbjct: 614 AGQVRGCGQYEFRIKDNGIGMSPEFAKKIFEPFERERTSTVSRIQ--GTGLGMAITKNIV 671

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
           ++ GG + + ++    +    R+P
Sbjct: 672 DMMGGTIEVQTAQGKGSEFIIRVP 695


>gi|294665048|ref|ZP_06730354.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605166|gb|EFF48511.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 641

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 12/238 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N  + 
Sbjct: 243 SLQAETAARAQAE---HANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRG 299

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHE 664
             +  I  S+     +++D+LD++ + +G ++L      +  L+    E+ Q  A    +
Sbjct: 300 LVI--IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALT-RK 356

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + +    DG+L  F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V+
Sbjct: 357 IALELDAPCDGEL-WFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQ 415

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I  +    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG
Sbjct: 416 DTGIGIAAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEG 473


>gi|302381782|ref|YP_003817605.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192410|gb|ADK99981.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 663

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 22/251 (8%)

Query: 543 VNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           V+V   + A RA   + ++ R     A + K+ F+ ++S+ELR+PLT+I+GF+ L+    
Sbjct: 251 VDVVRDITARRAAQAELQSARLLAEAASQAKSEFLANMSHELRTPLTSILGFSRLIGAG- 309

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN---YSTIVLND----LL 651
            G L++    Y++ I ++   LL +VNDILD + ++AG + L+   +S   L +    LL
Sbjct: 310 -GDLSASDRGYLDLIRSAGETLLTVVNDILDFSKLEAGALALSPEPFSVAALGEGATALL 368

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TV 708
            E  ++    +    +      D +L   V D  RL Q+   +L NA+ F+ +G+   ++
Sbjct: 369 REQAEAKGLVLSCEILGAGPAGDARL---VGDVTRLRQVLLNLLGNAVKFTERGNVRLSL 425

Query: 709 ILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            ++ A+D       SV + G  +     + +F RF        RR  G GLGL+I    +
Sbjct: 426 SVEPAQDGTATLSASVTDTGPGLAAGQIEQMFERFTQADGSVSRRFGGTGLGLAISRRLM 485

Query: 766 NLHGGHVSISS 776
           ++ GG +   S
Sbjct: 486 DVMGGEIGARS 496


>gi|254881711|ref|ZP_05254421.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|319643677|ref|ZP_07998294.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
 gi|254834504|gb|EET14813.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|317384707|gb|EFV65669.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
          Length = 757

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 6/236 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            VN+ +    E  L    +   +A E+K SF+ ++S+E+R+PL  I+GF++LL T K  S
Sbjct: 512 LVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNIS 570

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              K+ ++   I  ++ +LL LVND+L+L+ +++G M  +      +     V Q+    
Sbjct: 571 EEEKK-EFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVI 629

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
           +      IK   D  +   + DR RL Q+ +  L NA  F+S+G   +     ++  +  
Sbjct: 630 ILPPVEFIKEFPDEDVTIHI-DRMRLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIH 688

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V++ G+ IP++  + +F RF       Q  GVGLGL+I +  +    GH+ + S
Sbjct: 689 IFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAISKVIVEKMNGHIDVQS 742


>gi|294624915|ref|ZP_06703570.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600794|gb|EFF44876.1| sensory/regulatory protein RpfC [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 726

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 124/247 (50%), Gaps = 15/247 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +     
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNMILQPQAKTRGLDYGTE 289

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
               +   +  D   L Q+   +L NA+ F+  G  V+L+ AR +G+        F V++
Sbjct: 290 VATDVPDLLKGDTGHLRQVLLNLLGNAVKFTEHGH-VLLRVARLSGNGADTVRLRFDVED 348

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG +  + +  G +
Sbjct: 349 SGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGAIGFAPNPSGGS 407

Query: 783 TINCRIP 789
                +P
Sbjct: 408 VFWFELP 414


>gi|145300269|ref|YP_001143110.1| aerobic respiration control sensor protein ArcB [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853041|gb|ABO91362.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 770

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +    L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+ +Q Q 
Sbjct: 264 RDITERKQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDT---PLDPRQHQQ 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+DL  +D   +++  + I L   L+E++     +  +  + +
Sbjct: 321 LKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETLSRIQAEQKGLYL 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI--FSV 723
               DG +  FV AD  RL Q+   ++ NA+ F+ +G   +     AA   G     F V
Sbjct: 381 HFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTVRCLSHAADVPGKLALHFEV 440

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ G  IP    + +F  +     +    G G+GL++    +   GG + + S
Sbjct: 441 EDTGVGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGQLYVDS 493


>gi|119513099|ref|ZP_01632152.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
 gi|119462233|gb|EAW43217.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
          Length = 444

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L +A  +K+ F+  +S+ELR+P+  IIGF+ +L   K G L  +Q+  VE I  +  
Sbjct: 164 NFKLLEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGKLTHQQTDMVERILNNGK 223

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+N++LD + ++ G ++L      L  ++N V   + +      + ++V  D +  
Sbjct: 224 NLLMLLNEVLDFSKLEGGRLELKPELFDLTKIINIVVAQMRSLAEAKKLSLRVDIDMQQP 283

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  R+ QI   +LSNA+ F+  G   I            +V++ G  I     K +
Sbjct: 284 LVFNDSVRVRQILINLLSNAIKFTESGCIWIEVKELPQNQLAIAVRDTGIGIASRDFKHI 343

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F  F  V  +   +  G GLGL+I++S + + GG + + S
Sbjct: 344 FEAFRQVDQSITRKYPGTGLGLAIIDSLVQMMGGRIILES 383


>gi|170738329|ref|YP_001779589.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820517|gb|ACA95099.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 656

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 142/310 (45%), Gaps = 25/310 (8%)

Query: 502 AIITSFDDERKSLQGTLELLSDSV------LEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           A+  SF D R  + G L++L            ++  P+ +AQ     +++T     ER  
Sbjct: 192 AVPASFADLRAPV-GPLDVLCVRPNGGRFRATFAASPIVDAQGHCAGLSLTLREAGERRR 250

Query: 556 TEKN--EALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +E++   +LR A          + +K+  +  VS+ELR+PL  I G+ ++L+ +      
Sbjct: 251 SERHHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWAEVLRNADGQDF- 309

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               Q V+ I  S+  L ++V D+LD +++  G ++L    + L  +  +  + + T   
Sbjct: 310 --AQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIARDAARELDTTAQ 367

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N + +            AD +RL Q+ S +LSNA+ F+  G  V +   R       SV
Sbjct: 368 ANGLVLSTEYAMPACVIPADGERLRQLLSNLLSNAIKFTPPGGRVNVSLTRAGERVRLSV 427

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I  +    +F  F     A    +RG+GLGLSIV +   LHGG V  +S+  G 
Sbjct: 428 SDTGQGIAPEYLPHLFETFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAGR 487

Query: 782 -TTINCRIPS 790
             T+   +P+
Sbjct: 488 GMTVTVTLPA 497


>gi|92113759|ref|YP_573687.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
 gi|91796849|gb|ABE58988.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
          Length = 930

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 122/225 (54%), Gaps = 11/225 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ IK+ F+ ++S+E+R+PL  IIGF  LL  S   +L+S+Q +++E +  +S  LL+L
Sbjct: 268 EANRIKSQFLANISHEIRTPLNGIIGFCQLLGRS---ALDSRQREWLEQVQTASDNLLSL 324

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVA 682
           ++D+LD + ++AG ++L    + +  L++EV    A      ++ +  ++ D      + 
Sbjct: 325 ISDVLDFSKIEAGKLELETVPVDMVTLVDEVLGLQAPTAQRKSLHLLGLVYDDVPDQLLG 384

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSV 738
           D  R+ QI + +++NA+ F+ +G  V+     D    +     SV++ G  +     + +
Sbjct: 385 DPLRIKQILTNLVNNAVKFTERGEVVVRVMLDDLNATSSKLRISVRDTGIGLDLPSRERL 444

Query: 739 FNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSI-SSSDEG 780
           F  F   +A R ++ G  GLGL I +  +   GG + + S S EG
Sbjct: 445 FQAFSQGDASRSRKYGGTGLGLMISKRLVEQMGGDIDVESESGEG 489


>gi|322370252|ref|ZP_08044814.1| multi-sensor signal transduction histidine kinase [Haladaptatus
           paucihalophilus DX253]
 gi|320550588|gb|EFW92240.1| multi-sensor signal transduction histidine kinase [Haladaptatus
           paucihalophilus DX253]
          Length = 457

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 162/346 (46%), Gaps = 45/346 (13%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---SPGTHIRN--IAATCSRYYNES 494
           ID   EG+A+   D R    N A+ +L++ +   L   +  T + +  +A   S   +  
Sbjct: 137 IDTTREGIALLTDDFRFNYVNDAYANLFEYDAETLIGRNWATTLTDDAVATLSSEVVSTV 196

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           D    ++  IT    + ++L  TL          +I   P+ + +    +VT+    E+A
Sbjct: 197 DAAGEWSGEITGERKDGRTLALTL----------TISAAPDDEYVCAVRDVTERKEREKA 246

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +NE L       + F   VS++LR PL+ + G+ DL +        + +S++ + I 
Sbjct: 247 LVRENERL-------DEFASQVSHDLRGPLSIVYGYLDLAR-------KTGESEHFDEIE 292

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  +  +++D+L++A    G   L   T+VL++   +V   I +   E+       +D
Sbjct: 293 RAANRIEAIISDLLEIAR--EGQKTLKLETVVLDEFAADVWDGIES---ESATVDTGPAD 347

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G+L   +ADR RL ++F+ +  NA++      TV + +  D     F V ++G  IP++ 
Sbjct: 348 GRL---LADRDRLTELFANLFRNAVEHGGDDVTVSVGSTCDG----FYVADDGHGIPDEH 400

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            K V      + +  +  G GLGLSIV+   + HG  +SI  SD G
Sbjct: 401 RKQVLQ----SGYSTEEVGTGLGLSIVQQIADSHGWSLSIDESDAG 442


>gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio
           furnissii NCTC 11218]
          Length = 1113

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +N+     ++ 
Sbjct: 427 QVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPINAAHKYQLDI 486

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670
           I +S   L  LV+D+LD   +  G + ++ + + L++    V +     + +  IRI  +
Sbjct: 487 IISSGQRLATLVDDLLDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRIINQ 546

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V  +  +    AD QRL Q+   ++ NA+ ++S+G  VI  A R +      V + G  I
Sbjct: 547 VAEEAPVW-VSADAQRLEQVLYNLIGNAIKYTSEGKIVI-SATRVDQHIRVQVVDTGQGI 604

Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  + +F   +   H     R+G GLGLSI    I L  G + +SS     TT +  +
Sbjct: 605 PAEQLEHIFEPLIQAGHDTSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTL 664

Query: 789 P 789
           P
Sbjct: 665 P 665


>gi|309388596|gb|ADO76476.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 128/229 (55%), Gaps = 7/229 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++++  FV +VS+EL+SPLT+I G  ++L    + +  ++Q +Y++ I   S  L +L++
Sbjct: 367 EKLQREFVANVSHELKSPLTSIKGSAEILLDGIIEN-EAQQKEYLKMILKESNSLAHLID 425

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVISDGKLGSFVADR 684
           + L LA +D+G ++LN   I +  L  +++      K  E ++  +  +D +L    A+R
Sbjct: 426 ETLTLAEIDSGGVELNKEKIKVKTLFQDLEIFFDNIKKEEQSLEFEFEADLEL---YANR 482

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           +++ Q+   +L+N++ +S+K   + LKA +       SV +NG  IP+   K+++ RF  
Sbjct: 483 EKIRQVLINLLTNSVKYSAKKGKIKLKALQMAEKIKISVSDNGIGIPKAEQKNIWERFYK 542

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  A     R  GLGL+IV+  I  H G +++ S     +T +  +P+K
Sbjct: 543 IDKARTPGERSSGLGLAIVKQIIQEHQGKLALKSQVGEGSTFSFILPNK 591


>gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 1370

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 123/243 (50%), Gaps = 11/243 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+ +R ER L    +A   A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 612 VDLTEQMRRERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSE---L 668

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  ++    S+  LL+++NDILD + +++G + L      L+ LL  +   + T +
Sbjct: 669 PQAAKDMIQKTDISARALLDIINDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTAI 728

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
               + + V    K   ++  D  RL Q+   ++ NA+ F+ +G   +   A  + +   
Sbjct: 729 SAKPVEMIVEPLPKGCRWLRGDALRLNQVLVNLVGNAIKFTEQGEVTLSVRAFPSPEVGK 788

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +FSV++ G  IP +    +F+ F+       RR  G GLGL+I    + L GG + +
Sbjct: 789 IKLMFSVRDTGIGIPREKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGQLEV 848

Query: 775 SSS 777
            S+
Sbjct: 849 QST 851


>gi|229150754|ref|ZP_04278968.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|228632841|gb|EEK89456.1| Sensor histidine kinase [Bacillus cereus m1550]
          Length = 312

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311


>gi|254487694|ref|ZP_05100899.1| signal transduction histidine kinase [Roseobacter sp. GAI101]
 gi|214044563|gb|EEB85201.1| signal transduction histidine kinase [Roseobacter sp. GAI101]
          Length = 568

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 121/250 (48%), Gaps = 12/250 (4%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +TFV++TD +    AL    EALR+ADE    K+ F+  VS+ELR+PLT++ G   L  +
Sbjct: 304 ITFVDITDRIAISAAL---EEALRQADEANKAKDEFISVVSHELRTPLTSLTGGLTLALS 360

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +LG +       +     +   L  LV++IL +  +D   + L    + L  LL E  +
Sbjct: 361 GRLGDVADPIRSLLNIAHRNGVRLSRLVDNILLVQKIDIDALILESKPVDLGHLLEESFE 420

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               KM  +   +++     + + +  D   + QI   ++SNA+ FS++ S V       
Sbjct: 421 E--NKMFASKRGVQLALGNIMPAVITGDAFAIRQIIDNLISNAIKFSNENSVVEGTLIAM 478

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           NG    S+KN G  IPE M   VF RF  V N+ +   +G GLGL I +       G +S
Sbjct: 479 NGQVRLSIKNAGRGIPEGMESQVFGRFEQVENSGQSSTQGSGLGLHISKKLAKQMSGDIS 538

Query: 774 ISSS-DEGVT 782
             S  D G T
Sbjct: 539 YESQLDVGTT 548


>gi|187935295|ref|YP_001885677.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B]
 gi|187723448|gb|ACD24669.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B]
          Length = 317

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           RKA + KN  + +VS++LR+PLT+IIG+ +++ + K    +  Q +Y   I+   +  LN
Sbjct: 90  RKAQKTKNDLITNVSHDLRTPLTSIIGYLEIIDSDKYK--DEIQLRYYANIAYEKSKSLN 147

Query: 623 -LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            L+ND+ +L  +    +KL    I L +LL +V      +     ++ ++  S+ KL   
Sbjct: 148 LLINDLFELTKMQNNTIKLEKVKINLVELLGQVIAYFKCQFDNEKMKARIKFSEDKL-IV 206

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD ++L++ F  +LSN++ +   G  V +    +    I  + N G +IP      +F+
Sbjct: 207 NADAEKLVRAFENLLSNSIKYGRDGYYVDIITKSEGDMAIVQIINYGEAIPAIDLPYIFD 266

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  +  +      G GLGL+I ++ I LH G +S + SDE  T    R+P
Sbjct: 267 RFYRIEKSRNSDIGGSGLGLAITKNIIELHQGRIS-AYSDENKTIFEVRLP 316


>gi|270262775|ref|ZP_06191046.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043459|gb|EFA16552.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 956

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 129/251 (51%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    +
Sbjct: 445 LVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---A 501

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L     + V  ++ SS +LL +++DILD + +++  +K+        +++  +  +    
Sbjct: 502 LPQGVDRLVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPL 561

Query: 662 MHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    +  +   ++ D  RL Q+ S +L+NA+ F+  G  +IL+    +    
Sbjct: 562 VVKKRLGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTG-CIILQVCTRSSYLE 620

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           FSV++ G  IPE     +F+ F       QR  +G GLGL+I E  IN+  G +++ S  
Sbjct: 621 FSVRDTGVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEP 680

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 681 GLGSLFTIRIP 691


>gi|257871362|ref|ZP_05651015.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257805526|gb|EEV34348.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 394

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ K+  + +VS+++R+PLT+IIG+  L++  +  S   +  +Y       +  + +
Sbjct: 155 RRIEQSKDELITNVSHDIRTPLTSIIGYLGLIEDRQYHS-EEELLKYTHTAYVKAKQMKS 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+ +   V    + +N  +  +  L+ ++      +     I+I+  +  +      
Sbjct: 214 LVDDLFEYTKVRQPSVPINVISFDMAQLVEQLAADFELEASRKGIKIETHTRPEHIIMDG 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++L+++F+ +LSNA+ +      ++++  +   + I +VKNNG  IP+    S+F+RF
Sbjct: 274 DTEKLVRVFNNLLSNALKYGKGADKIVMEVEKVGTEAILTVKNNGQMIPKHSLDSLFDRF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             V  +   +  G GLGL+I +S + LHGG++   S+ +
Sbjct: 334 YRVEESRSQETGGTGLGLAIAQSIVALHGGYIFAKSTPD 372


>gi|326201973|ref|ZP_08191843.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987768|gb|EGD48594.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 512

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 120/219 (54%), Gaps = 4/219 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L++ +E++  F+ +VS+ELR+P+T+I GF + +    +     +Q  Y+  +   +  
Sbjct: 275 EDLQRLEELRRGFIANVSHELRTPMTSIRGFIEGILDGTIPP--ERQKGYLTIVRDETNR 332

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVND+LDLA +++G + L      +N+L+      + T +   N+ I+   +     
Sbjct: 333 LNRLVNDLLDLAKMESGELTLTMKPFDINELIRICVIKLETLITSKNLEIEANFEIDNMM 392

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD+  + ++   +L NA+ FS++   +I++ A++      SVK+NG  I  D  K ++
Sbjct: 393 VSADKDSIERVIINLLHNAVKFSNENGKIIVETAKNKDKIYVSVKDNGIGIDGDDKKRIW 452

Query: 740 NRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
           +RF  S+  RG+ + G GLGL+IV++ +  H   + + S
Sbjct: 453 DRFYKSDKSRGKDKTGTGLGLAIVKNIVTEHKQDIWVES 491


>gi|254684476|ref|ZP_05148336.1| sensor histidine kinase, putative [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724003|ref|ZP_05185789.1| sensor histidine kinase, putative [Bacillus anthracis str. A1055]
          Length = 355

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 127/239 (53%), Gaps = 13/239 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QYV  
Sbjct: 115 KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQYVSI 173

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   S  L N V+D+L+   ++   ++L  S + +   + ++      ++ + ++   + 
Sbjct: 174 LKRKSYELKNQVDDLLEYCQINYREIELQKSVVNMKAFIEQIMIDFVPQLDDADMSFCIK 233

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  L     D   ++++F  ++SN++ +   G  + ++ ++ + +    +KN G  IP 
Sbjct: 234 GDKGL-HVEMDVALMVRLFENVISNSIMYGKDGKQIWIQISKRDMNVEIEIKNFGQCIPN 292

Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
           +    VF +F    +RG++       G G+GL+I  S   LH G +++ S+D E V TI
Sbjct: 293 ENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDIAVRSNDKETVFTI 347


>gi|261344881|ref|ZP_05972525.1| sensor histidine kinase/response regulator [Providencia rustigianii
           DSM 4541]
 gi|282567019|gb|EFB72554.1| sensor histidine kinase/response regulator [Providencia rustigianii
           DSM 4541]
          Length = 781

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    EAL  A   K +F+  +S+ELR+PL  I+G + +L  +K   L+ +Q+ Y
Sbjct: 264 RDITERKRYQEALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTK---LSKEQASY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ ND++++  ++   ++L+   +VL + +N+++      +    ++ 
Sbjct: 321 LKTIHVSAITLGNIFNDVIEMDKIERRKVQLDNQPVVLPEFVNDLENLSGLLVQPKGLKF 380

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            + ++ G   + + D  RL QI   ++ NA+ F+ KG   +      +    F VK++G 
Sbjct: 381 VLDVARGLPKTILTDGTRLRQILWNLIGNAVKFTQKGEVKLSIWREADNKLFFQVKDSGI 440

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            IP+D    +F  +  V ++  G+   G G+GLS+        GG + + S
Sbjct: 441 GIPQDELDKIFAMYYQVRDSAGGRPATGTGIGLSVSRRLAQSMGGDIQVES 491


>gi|261410070|ref|YP_003246311.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261286533|gb|ACX68504.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 459

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            ++  + L + ++++  FV +VS+E++SPL +I GF+  L+T +L     +Q  Y+  I 
Sbjct: 225 FSQMAKGLAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLS--EEQQQHYLSIIE 282

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS- 673
           A S  +  L   +L LA++D     L+ ST    D+  ++KQ +     E N R K ++ 
Sbjct: 283 AESRRMSQLSKQLLMLASLDKEENILDKSTF---DVAEQIKQVLFHT--EWNWRSKDLTI 337

Query: 674 DGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           D  L       D+Q L Q+++ +++N++ F++    + L+    N      + + G  IP
Sbjct: 338 DMSLPPTYVYGDQQLLHQVWTNLITNSIKFTAPEGAISLRVIEHNTQCRIEISDTGIGIP 397

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +FNRF  V  A        GLGLSI +  + LHGG + ++S     TT    +P
Sbjct: 398 QEHLPHIFNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVILP 457

Query: 790 S 790
           +
Sbjct: 458 N 458


>gi|154490016|ref|ZP_02030277.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
 gi|154089458|gb|EDN88502.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
          Length = 720

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 129/222 (58%), Gaps = 16/222 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + +R+AD++K++F+ ++S+E+R+PL  IIGF+++L  +       ++ ++V+ I+ +S +
Sbjct: 494 QKVREADKLKSAFLANMSHEIRTPLNAIIGFSNILAET---DDKEEKEEFVKIINKNSDL 550

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKL 677
           LL L+ DILD + +++G++  + S   L D+ +E  Q  A KM E   ++ +I   D   
Sbjct: 551 LLRLITDILDFSKIESGVLDYSLSDTSLKDIFHEQFQVHAMKMPE---KVSLICDFDALP 607

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMC 735
             FV  D +R+ Q+ S ++SNA+ F+  GS  I  + R    ++   V + G  I     
Sbjct: 608 DIFVHTDPKRVTQVLSNLISNAVKFTEVGS--IRFSYRIVEKYVLVEVIDTGIGISPQHQ 665

Query: 736 KSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +++F+RFV  N+    ++G GLGL+I ++ I    G + + S
Sbjct: 666 QAIFDRFVKVNSF---KQGTGLGLTICKTIIEALNGTIGVDS 704


>gi|158522821|ref|YP_001530691.1| multi-sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158511647|gb|ABW68614.1| multi-sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 498

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 20/237 (8%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--------NSKQSQYVEYISASS 617
           D++K+ FV  VS+ELRSPL+ I          +LG++        +  + QY+   +   
Sbjct: 266 DQLKSEFVAKVSHELRSPLSTI--------HEQLGAVLRDMAEENDDNEDQYILSRAKEK 317

Query: 618 T-ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           T  L+ L+ D+LDL+ +++G +  N   I L +LL  +   + ++      R+ + +  G
Sbjct: 318 TGGLIALIGDLLDLSRIESGGVTHNIQPIRLENLLASIVDFMQSRAAAREQRLSLELGTG 377

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                 AD   L  IF  +++NA+ ++  G +V+++A  ++G F  SV + G  + E   
Sbjct: 378 PFPELTADPLALESIFGNLVANALQYTGNGGSVVVRADMEDGFFRVSVADTGFGVAEQHR 437

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + +F +F        R   G GLGL IV+  +   GG + ++S     +T   R+P+
Sbjct: 438 EKIFEKFFRVKDENTRFITGTGLGLPIVKGLVEQMGGTIDLASQPGKGSTFTVRLPA 494


>gi|30261120|ref|NP_843497.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Ames]
 gi|47526275|ref|YP_017624.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183954|ref|YP_027206.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Sterne]
 gi|65318399|ref|ZP_00391358.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165871661|ref|ZP_02216306.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0488]
 gi|167635457|ref|ZP_02393770.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0442]
 gi|167638936|ref|ZP_02397210.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0193]
 gi|170687610|ref|ZP_02878826.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0465]
 gi|177653531|ref|ZP_02935705.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0174]
 gi|190566627|ref|ZP_03019544.1| sensor histidine kinase/response regulator [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816148|ref|YP_002816157.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CDC 684]
 gi|229600347|ref|YP_002865551.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0248]
 gi|254682823|ref|ZP_05146684.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725609|ref|ZP_05187391.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A1055]
 gi|254734235|ref|ZP_05191948.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740116|ref|ZP_05197808.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Kruger B]
 gi|254753457|ref|ZP_05205493.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Vollum]
 gi|254758554|ref|ZP_05210581.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Australia 94]
 gi|30254734|gb|AAP24983.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Ames]
 gi|47501423|gb|AAT30099.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49177881|gb|AAT53257.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Sterne]
 gi|164712562|gb|EDR18094.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0488]
 gi|167513066|gb|EDR88438.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0193]
 gi|167529075|gb|EDR91829.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0442]
 gi|170668423|gb|EDT19170.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0465]
 gi|172081335|gb|EDT66409.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0174]
 gi|190562179|gb|EDV16147.1| sensor histidine kinase/response regulator [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006998|gb|ACP16741.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CDC 684]
 gi|229264755|gb|ACQ46392.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0248]
          Length = 896

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|262199396|ref|YP_003270605.1| histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262082743|gb|ACY18712.1| histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 519

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 126/242 (52%), Gaps = 9/242 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E   +A + K  F+ ++S+E+R+PL NI+G+ ++L T   G +  K+  + + I 
Sbjct: 141 LAQLREEAERASQSKAMFLANISHEMRTPLGNIMGYAEMLAT--YGEIGDKEMHFAKTIL 198

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            SS  LL++++++LDL+ ++AG +++      +  L ++ + ++A K  +  IR ++ ++
Sbjct: 199 KSSRDLLSIIDNVLDLSAIEAGKLRIERVAFNVRGLASDFQTAVALKAQKKGIRFELNVA 258

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPE 732
           D    + +AD  +L QI + ++ NA+ F+  G   + L   RD    +  V++ G  I  
Sbjct: 259 DSVPANVIADPTKLKQILNNLVGNAIKFTESGLVHLALDYERDC--LLVRVRDTGIGIEP 316

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIP 789
              + +F  F        RR  G GLGL++        GG + + SS  G  ++   RI 
Sbjct: 317 AQARLLFRPFSQADISTSRRFGGSGLGLALSRDLARAMGGDLRLHSSVPGEGSVFEARIE 376

Query: 790 SK 791
           ++
Sbjct: 377 AR 378


>gi|37676307|ref|NP_936703.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200848|dbj|BAC96673.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 1223

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 11/255 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F +++D  + E AL E N A  +A E +N F+  VS+ELR+P+  ++G  ++L + +L  
Sbjct: 664 FSDISDLKQTELALRESNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEIL-SHRLS- 721

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            NS+  Q ++    S+  L   VNDILD + ++A  ++L+     + + L  V +S    
Sbjct: 722 -NSESQQLLDNAIRSAERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPVLRSFEAS 780

Query: 662 MHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                ++  V    +  +++    D  R+ QI S +LSNA+ F+  G  + ++ A D   
Sbjct: 781 AQLKGLQFNV--HWQPTAYIDAQYDALRVNQIVSNLLSNAVKFTEVGQ-IKVEIACDENA 837

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               + + G  + E     VF  FV       RR  G GLG+SIV+S ++L GG ++  S
Sbjct: 838 LSIEIVDTGCGMTEAQLDCVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMGGTIAFHS 897

Query: 777 SDEGVTTINCRIPSK 791
             E  T ++  IP K
Sbjct: 898 ELEQGTKVSVWIPVK 912


>gi|37522691|ref|NP_926068.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35213693|dbj|BAC91063.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 358

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 138/298 (46%), Gaps = 13/298 (4%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           +SDG   F  I+     +R S    L+  +D  +   I P      +L    V   +R +
Sbjct: 72  KSDGHLPFLPILLVTASDRPSAVLGLDAGADEFIRKPIEP----DELLA--RVRSLLRLK 125

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+++E++   R+    +  FV  ++++LR+PL       +LL    LG +    ++ V+ 
Sbjct: 126 RSISERDNIARQ----REDFVARLAHDLRTPLVAADRMFNLLGQGALGPMPPSMAETVDI 181

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++ S++ LL LV  +LD+   +AG  KL++  + + +L+ +V   +A    E ++ +   
Sbjct: 182 MARSNSNLLALVRTLLDVYRYEAGAKKLHFQPVDVIELMRQVCDELAPLAAEKHLELCAQ 241

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +       ADR  L ++ + +L NA+ F+ +G   +     D G       + G  I  
Sbjct: 242 LEAA-PKVPADRLELRRVLTNLLGNALKFTDQGGVTVRSRLEDGGCVHLDFCDTGPGIAA 300

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F RF    H   + G G+GL +    +  HGG +S++S+    +T    +P+
Sbjct: 301 EEQAYLFRRFAQGRH--NKEGSGMGLHLSRQIVEAHGGTLSLTSAPGKGSTFTVTLPA 356


>gi|332528708|ref|ZP_08404685.1| two-component system sensor-response regulator hybrid protein
           [Hylemonella gracilis ATCC 19624]
 gi|332041774|gb|EGI78123.1| two-component system sensor-response regulator hybrid protein
           [Hylemonella gracilis ATCC 19624]
          Length = 1345

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 127/256 (49%), Gaps = 15/256 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   +AE AL +  +    A + K+ F+ ++S+E+R+P+  I+G   LL+     SL+
Sbjct: 589 DVTVLKQAEEALVKAKQKAEDATQAKSDFLANMSHEIRTPMNAILGLCYLLEQQ---SLS 645

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + V+ I A+   LL ++ND+LD + ++A  M +      L+D+L+ +   ++  + 
Sbjct: 646 PTSREMVQKIHAAGKTLLTIINDVLDFSKIEAQHMVIEQVPFRLSDVLDNLASIMSASLG 705

Query: 664 ENNIRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-- 718
              + + V    DG     + DR RL Q+   + SNA+ F+ +G   V +    D G+  
Sbjct: 706 SKPLELVVGPPPDGA-NYLIGDRLRLGQVLVNLASNAIKFTGQGEVEVRVDRLPDTGNGR 764

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
               FSV++ G  I  D  + +F+ F S A     R   G GLGL+I    + L GG + 
Sbjct: 765 VMLRFSVRDTGIGIAPDKQEMIFHAF-SQADTSTTRSFGGTGLGLAISRHLVALMGGRLQ 823

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    +  +  +P
Sbjct: 824 VHSAPGQGSNFHFELP 839


>gi|266623520|ref|ZP_06116455.1| phosphate regulon sensor histidine kinase [Clostridium hathewayi
           DSM 13479]
 gi|288864691|gb|EFC96989.1| phosphate regulon sensor histidine kinase [Clostridium hathewayi
           DSM 13479]
          Length = 462

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 122/229 (53%), Gaps = 13/229 (5%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +I+  F  + S+EL++P+T++ G+ +LL++  +   + K   +V  I   +  + +L+ND
Sbjct: 240 QIRQEFFSNASHELKTPITSVQGYAELLESGIIQDEDQKMD-FVRRIKKEAVHMTSLIND 298

Query: 627 IL---DLATVDAGIMKLNYS-TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           IL    L T +A ++  +    IVL+D+L  +K   A   HE    + V ++ K     A
Sbjct: 299 ILMISRLETKEAEVVCQDVRMAIVLDDVLESLKPLAA--FHE----VLVHAECKPLCIYA 352

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           + +++ ++   +LSNA+ ++  G  V +    +N + I  V++NG  IP++    +F RF
Sbjct: 353 NARQMTELLGNLLSNAIKYNKPGGEVWVTITEENREMIIRVRDNGMGIPKESLGRIFERF 412

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V      ++ G GLGLSIV+  ++ + G +++ S  E  T    +IP
Sbjct: 413 YRVDKGRSRKQGGTGLGLSIVKHIVSFYHGTIAVQSELEAGTEFTVKIP 461


>gi|260771196|ref|ZP_05880123.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
 gi|260613793|gb|EEX38985.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
          Length = 1113

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +N+     ++ 
Sbjct: 427 QVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPINAAHKYQLDI 486

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670
           I +S   L  LV+D+LD   +  G + ++ + + L++    V +     + +  IRI  +
Sbjct: 487 IISSGQRLATLVDDLLDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRIINQ 546

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V  +  +    AD QRL Q+   ++ NA+ ++S+G  VI  A R +      V + G  I
Sbjct: 547 VAEEAPVW-VSADAQRLEQVLYNLIGNAIKYTSEGKIVI-SATRVDQHIRVQVVDTGQGI 604

Query: 731 PEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  + +F   +   H     R+G GLGLSI    I L  G + +SS     TT +  +
Sbjct: 605 PAEQLEHIFEPLIQAGHDTSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTL 664

Query: 789 P 789
           P
Sbjct: 665 P 665


>gi|228965492|ref|ZP_04126578.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794222|gb|EEM41740.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 277

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 47  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 105

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     +    +A
Sbjct: 106 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 165

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 166 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 225

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 226 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 276


>gi|229060228|ref|ZP_04197597.1| Sensor histidine kinase [Bacillus cereus AH603]
 gi|228719110|gb|EEL70722.1| Sensor histidine kinase [Bacillus cereus AH603]
          Length = 312

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +  R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I 
Sbjct: 74  LKESIDEERQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIY 132

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              T L  L+ND+ +   V    + L  + I + +LL ++      ++ E NI  +    
Sbjct: 133 GKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANIECRPSFP 192

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +    +AD  +L+++F  ++ NA+ + ++G  + L A   N      + N G  IP   
Sbjct: 193 SQKLMVLADGDKLVRVFENLIINAIAYGNEGDYIDLTAYESNNMITIDITNYGQPIPSTD 252

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F RF  V  +      G GLGL+I +S + LH G + + S D+  T     +P K
Sbjct: 253 LPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 311


>gi|227538327|ref|ZP_03968376.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241842|gb|EEI91857.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 644

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 125/246 (50%), Gaps = 14/246 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSK---QS 607
           ER L E+     K  E K   +  +++E+R+P+ ++IG  DLLK  + L +   K   +S
Sbjct: 323 ERKLIEEKLYANKLAEEKTDTIAEITHEIRTPINSLIGIIDLLKKKENLYTDKDKLLLES 382

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y    + S TI     NDIL+L+ VD     L  S   +NDLL +V +    +    N+
Sbjct: 383 AYSSIQNTSKTI-----NDILNLSKVDDSSNNLLLSNFDINDLLMDVVEQNRNQAELKNL 437

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVK 724
           +IK + +  L + V +D  ++  I + +LSN++ +S KG T+I     DN     I +V+
Sbjct: 438 QIKYVKEKGLRTIVYSDEFKIRHILNNLLSNSIKYSQKG-TIISSVMIDNKSSQLILTVE 496

Query: 725 NNGSSIPEDMCKSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  I  D+ K++F + F  N +     GVGLGL I++  +N   G +S +S     TT
Sbjct: 497 DQGIGISADLEKTIFRKYFTVNKNNKVEGGVGLGLFILQKLVNSLNGKISFTSQSNVGTT 556

Query: 784 INCRIP 789
               IP
Sbjct: 557 FTITIP 562


>gi|239814664|ref|YP_002943574.1| histidine kinase [Variovorax paradoxus S110]
 gi|239801241|gb|ACS18308.1| histidine kinase [Variovorax paradoxus S110]
          Length = 518

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 126/250 (50%), Gaps = 29/250 (11%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYI 613
           L E  + LR++D+ K  F+  +++ELR+PL  +    T L++        ++  +Y E +
Sbjct: 138 LRELLDGLRESDQRKTEFLATLAHELRNPLAPMSTALTLLMRKPHE---PAEARRYYELM 194

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVL-----------NDLLNEVKQSIATKM 662
                 ++ LVND+++++ +  G ++L    + L             LL   + ++  ++
Sbjct: 195 GRQIDHMVRLVNDLMEVSRITRGKIELRMEAVALEAVIEDAIELSRPLLEGARHTLGKQL 254

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               + ++            D  RL Q+FS +L+NA  +++ G  + ++  R+  + +  
Sbjct: 255 CSEPVVVR-----------GDGVRLTQVFSNLLNNAAKYTAPGGKIRIELRRERREAVVE 303

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V +NG+ I  DM KS+F  F  VS   +  + G+G+GL++V+S + LHGG V  SS+  G
Sbjct: 304 VWDNGTGIAPDMLKSIFEMFVQVSGTSKAAQGGLGIGLTLVKSLVELHGGSVEASSAGLG 363

Query: 781 VTTINC-RIP 789
              + C R+P
Sbjct: 364 RGAMFCVRLP 373


>gi|170708012|ref|ZP_02898461.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0389]
 gi|170127172|gb|EDS96050.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0389]
          Length = 896

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|153007087|ref|YP_001381412.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030660|gb|ABS28428.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 969

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 157/366 (42%), Gaps = 48/366 (13%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI-- 503
           GV + GP+GR  + N   R +W  +    +   +    AAT      E   W L  A+  
Sbjct: 622 GVILTGPEGRAGIVNDHARQIWGGDG---ALDAYRGAWAATGIPLAPED--WALQRALRR 676

Query: 504 ----------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     I  FD  R ++      + D+    +         +  F +VTD+ RA+R
Sbjct: 677 GEVSTGELIDIERFDGGRATILNNAAPIRDAFGRIT-------GAVAAFQDVTDTRRAQR 729

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE-- 611
              E  +A+   DE+    +  VS++LR+PL+ II     +    LG   ++  + V   
Sbjct: 730 ---EAEDAVHHRDEV----LAIVSHDLRTPLSAII-----MGARVLGGGAAEDPERVRAT 777

Query: 612 --YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I++S   +  L+ D+LDLA+++ G + +  S    + L  E    I        + +
Sbjct: 778 ATRIASSGERMNRLIGDLLDLASLERGRLSMRRSAHAPSTLAREAADVIRPAAEAKGLDV 837

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +  +   L     D  R+LQ+   + SNA+  ++ G   I  +AR +   +F V++ G  
Sbjct: 838 RWRAADDLPLVPCDHDRILQVLGNLTSNAVKATASGHVAIGASARGD-QVLFEVQDTGPG 896

Query: 730 IPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           IP +    VF+RF     RG+     G GLGL+I  + +  HGG +   S+    T +  
Sbjct: 897 IPSEELPHVFDRF----RRGRSAAYAGTGLGLAIARALVEAHGGRIWAESTPGLGTVVRF 952

Query: 787 RIPSKE 792
            +P  E
Sbjct: 953 SLPVVE 958


>gi|126732967|ref|ZP_01748728.1| hypothetical protein SSE37_17750 [Sagittula stellata E-37]
 gi|126706584|gb|EBA05660.1| hypothetical protein SSE37_17750 [Sagittula stellata E-37]
          Length = 500

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 165/377 (43%), Gaps = 24/377 (6%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
           + + + D+  + +W  +  G + W N +++      G     A+GE    F+  +  +  
Sbjct: 140 LLRQICDNAPYPIWQTED-GTLTWTNETFEALKHDTG-----AVGEGACPFEHVMPIK-- 191

Query: 254 SSSALEKNFCETVS-TLEHGNNKSYKIV--RVLNSFGEAGIAID--VSKEITVNDQLTHT 308
                  +  + VS T   G+   Y+++   V  S+    I+I+  V  E+     +   
Sbjct: 192 -----RSDQTDRVSLTTRDGDVLWYEVISRPVGTSWLHYAISINNLVDAEMAQRKFVQTL 246

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            +   +L + +A+FD++R L   N + V+L  + + FL+  P+     + +R +  +PE 
Sbjct: 247 TKTFAHLPIGLAVFDRDRRLVLFNPALVDLTHLPVDFLSAKPNLLSFFDHMRESRMMPEP 306

Query: 369 LNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
            N+ TW+E I+ V  ++  + + +TW+LP+G T  +    +P G   ++ E+++ ++ L 
Sbjct: 307 KNYNTWREKIYDVVSAAREDRYAETWNLPSGLTYKITGRPHPDGAVAFLIEDISAEISLT 366

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            ++ + +++    +D   + VAVF   G +  +N A+R  W  + +       I +    
Sbjct: 367 RRFRSELEMTQSVLDRFDDAVAVFSRLGVLTFTNAAYRERWNCDPDSAFAEITIVDATKD 426

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            S     S  W      + +   ER      L       L  ++ P+ +  TM+ F +V 
Sbjct: 427 WSSGCLPSPIWSEIREFVLTL-RERACWDAELVTTEGEHLHCAVEPVSSGATMVRFSHV- 484

Query: 547 DSVRAERALTEKNEALR 563
              RA  AL     A R
Sbjct: 485 --ARAPTALKINEAAAR 499


>gi|159901168|ref|YP_001547415.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894207|gb|ABX07287.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 677

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +I+  ++  + ++LR+PLT II    +++    G +N +Q + ++  + SS  ++ ++N 
Sbjct: 447 QIREDYMGMLVHDLRAPLTAIINGMTMVRRGFAGPINDQQRELLDIANNSSQEMVGMINT 506

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ ++AG + LN +     ++++   + +       +I I +     L    AD+ +
Sbjct: 507 LLDISKMEAGELVLNRAPCSAYEIVDRASERLINSARSVDISINLDMALNLPIIDADQDK 566

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAAR--DN--GDFIFSVKNNGSSIPEDMCKSVFNRF 742
           +++I   +L NA+ F+  G +V ++  +  DN      +SV + G  IPE     +F++F
Sbjct: 567 IVRILQNLLDNAIKFTPVGGSVTIRVRQLTDNEKQTICWSVIDAGPGIPESYRAKIFDKF 626

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V  A  GQR+G GLGL+  +     HGG + + S +   +T +  IP
Sbjct: 627 VQVA--GQRKGTGLGLAFAKLASEAHGGRIWVESVEGEGSTFSFTIP 671


>gi|86608466|ref|YP_477228.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557008|gb|ABD01965.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 587

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 131/256 (51%), Gaps = 21/256 (8%)

Query: 551 AERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           A + L +KN+ L +A       +++K+ F+ + S+ELR+PL  IIGF  L+    +    
Sbjct: 295 ANQTLRQKNKELEQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIKLV-LDGMAENR 353

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  +++    S+  LL L+ND+LD+A ++AG M+L +    L  L  +V+   + +  
Sbjct: 354 EEELDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLEFQPCDLRALFKDVEAKTSLQAS 413

Query: 664 ENNIRIKV----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDN 716
           +  +++       SD  L   + D QRLLQ+   ++ NA+ F+ KGS V ++A     + 
Sbjct: 414 QKGLQLSFHLPNTSDQIL--LLGDYQRLLQVMLNLVGNAIKFTPKGS-VTVRADILPGNP 470

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           G     V + G  +  +  + +F  F  V  +   Q  G GLGL+I +  +   GG ++ 
Sbjct: 471 GLARIRVIDTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINF 530

Query: 775 SSSDEGV-TTINCRIP 789
            S  EG+ +T+   +P
Sbjct: 531 YSLGEGLGSTVTFTVP 546


>gi|238793308|ref|ZP_04636934.1| Multi-sensor hybrid histidine kinase [Yersinia intermedia ATCC
           29909]
 gi|238727277|gb|EEQ18805.1| Multi-sensor hybrid histidine kinase [Yersinia intermedia ATCC
           29909]
          Length = 645

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 9/238 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  +   +A+  K+  +  +S+E+R+PL   IG  +LL+ +    L S+Q +  E  
Sbjct: 88  ALAKSKQVAEQANRRKSVHLTTISHEIRTPLNGTIGAIELLQNT---PLTSEQYRLAETA 144

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671
              S  LL +VN++LD + +++G M L+     L  LL++   +I ++     I +   V
Sbjct: 145 RQCSHSLLTIVNNLLDFSRIESGQMALSQEKSALLPLLDQAMLTIHSQALSKAITLSTYV 204

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            SD  L +   D+QRL QI   +L NA+ F+  G  + L   R      F V++ G  I 
Sbjct: 205 SSDVPL-ALELDKQRLQQILVNLLGNAVKFTQCGH-IKLTVVRKGQQLCFIVEDTGCGID 262

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + + +F+ F+     GQ  G GLGL+I ++   + GG++++ S  +  +  +  +P
Sbjct: 263 LQLQQEIFHPFIQTHEHGQ--GTGLGLTIADNLARMMGGNITLFSLPDHGSRFSLNLP 318


>gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 597

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 4/231 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR  + I+  FV  VS+ELR+PLT+I G+T+ L    +      ++ ++  I   S  L 
Sbjct: 357 LRNLERIRRDFVSSVSHELRTPLTSIRGYTETLLDGAMHDAEHTEA-FLRIIHQESEQLT 415

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LDL+ +++G ++ +++ + L +++     ++A +  + ++R+ +     L    
Sbjct: 416 ALVNDVLDLSKIESGRIEYSFAPVSLMEVVERSMSTLAPQFAKKDVRLDLSIPADLPLVR 475

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D   L  +   +L NA+ +  + +  I L AA+ +G     V++NG  I +     +F 
Sbjct: 476 GDASYLEIVVRNLLDNAVKYVDEHNGRIRLSAAKRDGFVTLEVEDNGIGIAQKDLDRIFE 535

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A   Q  G GLGLSIV+  +  H G + + S     T     +P
Sbjct: 536 RFYRVDKARSRQLGGTGLGLSIVKHIVLAHKGDIKVRSRLNRGTAFTLTLP 586


>gi|325916867|ref|ZP_08179115.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536912|gb|EGD08660.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 636

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+   S+ELR+PL  I+G+  +L+   +        +++++I  +   LL L+
Sbjct: 272 ANRAKTEFLSRSSHELRTPLNAILGYAQVLE---MDLPEPGHRRHLQHILGAGRHLLGLI 328

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ++LD+A ++A  + L+   + ++  ++E    IA    ++ I ++  +     +  AD 
Sbjct: 329 TELLDIARIEADQLDLSPEPVPVDAAVHEALALIAPDAEKHGIHLQPPAIEGAWTVRADA 388

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QRL Q+   +LSNA+ F+  G  V + A  D      +V + G  +     + +F  F  
Sbjct: 389 QRLRQVLLNLLSNAVKFNRPGGNVQVSAQADGEQVRITVADQGQGLTPPQIQRLFTPFER 448

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             A R    G GLGL++ +  I   GG + + SS +G 
Sbjct: 449 LGAERSAVEGTGLGLALSKKLIEAMGGQIGVDSSRDGA 486


>gi|325273993|ref|ZP_08140152.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp.
           TJI-51]
 gi|324100882|gb|EGB98569.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp.
           TJI-51]
          Length = 593

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + Q  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 339 LLTYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 388

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+        ++++  +E I      L  L+ND+L+ +   +G+ KL  +
Sbjct: 389 VTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 448

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +++L+   +  +A +     I +    +  L    AD  +L ++   +L NA+  + 
Sbjct: 449 PCAIDELVERAQLRVADQAAHKQIELVSDLEQPLPRIQADPAQLDRVLDNLLHNAIRHTP 508

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           KG  + L A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 509 KGGRIRLHARRHAERVIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 566

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 567 IVQLHGGRMGVFSRPGQGTQFYMALP 592


>gi|298251303|ref|ZP_06975106.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297545895|gb|EFH79763.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 744

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 123/246 (50%), Gaps = 24/246 (9%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY----- 609
           ++E+ E  ++ DE    FV   S+EL++PLT +      L+        SKQ +Y     
Sbjct: 494 ISERKELEKRKDE----FVSLASHELKTPLTALKMLLYQLRK------KSKQEEYQDVTR 543

Query: 610 -VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  + A  T L  L+ND+LD++ +  G        I L+ ++ EV +++        +R
Sbjct: 544 ILSRMEAQVTTLTQLINDLLDVSKIQMGRFDYADEPIDLDTVIQEVVETLQQTTTTQTLR 603

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +     G +    VAD++RL Q+F+ I+SNA+ +S +  +V +  +      +  V++ G
Sbjct: 604 LH----GAVHQCIVADKRRLAQVFTNIISNAIKYSPQADSVDIWVSASQNTAVIRVQDYG 659

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             IPE++  +VF RF   ++    +   G+G+GL I +  +  +GG +++ S++   TT 
Sbjct: 660 VGIPEELQSTVFERFNRGSYGASEKVFPGLGMGLYIAKEIVKHYGGTITVESAEGRGTTF 719

Query: 785 NCRIPS 790
              +P 
Sbjct: 720 TVSLPG 725


>gi|254785929|ref|YP_003073358.1| transport-associated [Teredinibacter turnerae T7901]
 gi|237686801|gb|ACR14065.1| transport-associated [Teredinibacter turnerae T7901]
          Length = 485

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 165/365 (45%), Gaps = 35/365 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D     +  F   G++   NPA + L  T       G   +  A    R  NE     +
Sbjct: 138 VDKNPAAIVEFDEFGQMLFCNPAMQHLMMTH------GFDDQGHARIMPRDINE-----I 186

Query: 500 FAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAERALT 556
            A I+ S     ++L+  +E+ + D    +   PL  P  Q+++ +V   D    +RA  
Sbjct: 187 CAQIVDS-----QNLRAPVEVAIDDFWFNWHFSPLVSPVGQSVIGYV--FDVSEVKRAQA 239

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           + + A  +A   +  F   + +ELR+PL  I+G++DLL      +L  +  + +  I   
Sbjct: 240 QASVARAQA---RRDFYAKMIHELRTPLNAIVGYSDLLLCRNAENLKDRDLKALRGIKVG 296

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L  L++D LD++ ++AG M    +     D+L+E+ + +        +  +V    +
Sbjct: 297 GMQLNELISDTLDISKIEAGKMTTEITLFRPQDVLDEIHEQMHYLAEMKKLHYEVQCPPE 356

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--------NGDFIFSVKNNGS 728
             +  +D  ++ QI   ++SNA+ ++ KG   ++    D          +F+  V + G 
Sbjct: 357 F-TVASDIHKVRQILINLISNAVKYTRKGQVSVVVQPLDVEPPMEDCAEEFLIEVADTGM 415

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D   S+F+ +  V  ++    +G GLGL++V   + + GG +S++S     +  + 
Sbjct: 416 GIPADQLDSLFDSYQRVKESNTQGIQGTGLGLALVSDVVEILGGEISVASEYGAGSRFSV 475

Query: 787 RIPSK 791
           R+P++
Sbjct: 476 RLPTQ 480


>gi|192359994|ref|YP_001980883.1| MmoS [Cellvibrio japonicus Ueda107]
 gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
          Length = 803

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 24/236 (10%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +KN A   A   K+ F+  +S+E+R+P+  +IG  D+L+ +    L+  Q  Y++ I  S
Sbjct: 267 QKNAA-EDASRAKSQFLATMSHEIRTPMNGVIGMLDMLRDT---PLDENQKHYIDVIHRS 322

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL+++NDILD + ++AG M+L      L+DL+    Q      ++ NI +     G 
Sbjct: 323 GETLLSIINDILDYSKIEAGKMQLEEMVFELDDLVENCIQLFGATANKRNIELF----GG 378

Query: 677 LGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFI--FSV 723
           L   V      D  RL QI   +L NA  F+ +G  V L+   DN      G  +  F V
Sbjct: 379 LNPDVPRRLRGDPTRLRQIIINLLGNAFKFTEEG-FVSLEVGLDNTALQAEGRLMLRFVV 437

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +++G  I  +   ++F+ F        R+  G GLGL+I +S   L GG + + S+
Sbjct: 438 QDSGIGIDPNSASNLFDSFNQADASTTRKYGGTGLGLAICKSLAELMGGRIGVKSA 493


>gi|117923522|ref|YP_864139.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607278|gb|ABK42733.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 771

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 121/255 (47%), Gaps = 10/255 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V     AE+AL++  E  ++AD  K  F+  +S+E+R+PL  IIG +  L    L    +
Sbjct: 367 VYKRAEAEQALSQAVEQAQRADRAKGIFLATMSHEIRTPLHGIIGTSRQLNRMPLDRQVA 426

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            ++Q +E    +S  LL ++ND+LD + +D   + L      L  +L E+   + ++  E
Sbjct: 427 HKAQVIE---QASQALLGILNDVLDFSKIDTEQLVLEEVVFDLPRMLQELYAVVHSQAEE 483

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI 720
             +++ + + +    +   D+ RL QI + +LSNA+ F+ +G     V L    D   ++
Sbjct: 484 KGLQLHLQLQEPLPRACRGDQTRLRQILNNLLSNAIKFTQQGEVTLQVALTGETDPAPWV 543

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F+V + G  I E   + +F  F        RR  G GLGL+I        GG +     
Sbjct: 544 AFAVADTGIGIDEAHLERLFEPFKQMDESINRRFGGTGLGLAISAKLAEAMGGSIRAKRR 603

Query: 778 DEGVTTINCRIPSKE 792
            EG +     IP ++
Sbjct: 604 TEGGSLFTLMIPLRQ 618


>gi|283851110|ref|ZP_06368394.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573506|gb|EFC21482.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 869

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   R E  L +       A ++K+ F+ ++S+E+R+PL  ++G   LL+ S    L+
Sbjct: 467 DVTAQKRTESNLRQAMAEAETASKVKSEFLANISHEVRTPLNGVLGMLQLLEMSP---LS 523

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            + +  V         L+ ++ DILD + +DAG + L      +  ++ +V   ++ +  
Sbjct: 524 EEDAASVATALTCGRGLVKVLADILDFSLIDAGRVALCQDACDIRAVVTDVCGMLSPECG 583

Query: 664 ENNIRI-KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGD- 718
           +  I +   +SD  +  FVA D  RL QI   +L NA+ F+S G     I+ A+R  G  
Sbjct: 584 KKGISLFSEVSD-AVPPFVATDAARLRQILFNVLGNAVKFTSWGVVRLSIVPASRRGGTL 642

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             +F+V++ G  IPE+    +F+ F        R+  G GLGL IV+  I L  GH+++ 
Sbjct: 643 HLLFTVRDTGIGIPEERMDEIFDPFTQIDGSLTRKFGGTGLGLGIVKRLIGLLDGHITVE 702

Query: 776 S 776
           S
Sbjct: 703 S 703


>gi|229154672|ref|ZP_04282787.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
 gi|228628620|gb|EEK85332.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
          Length = 883

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHIG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|242279198|ref|YP_002991327.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242122092|gb|ACS79788.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 651

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 15/220 (6%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+E K+SF+  +S+ELR+P+  I+G +++L +S L    S+Q +YVE I  S++ LL ++
Sbjct: 139 ANEAKSSFLATISHELRTPMNGILGLSEILLSSGLA---SEQKEYVELIKGSASSLLRVL 195

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVAD 683
           ND+LD + ++  I++L      +  +L+ V  S         + I+     ++ G    D
Sbjct: 196 NDMLDYSKIERRILELREGIFDIRQILSLVMNSHGPNAINKGLNIECFLHPEISGELQGD 255

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------FIFSVKNNGSSIPEDM 734
             RL QI + I+SNA+ ++ KG   I     D  D          +F V + G  I    
Sbjct: 256 SGRLTQILNNIVSNAIKYTDKGGITIEVMPDDCMDDPYPAGSLRLLFVVSDTGVGISRGK 315

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
             S+F  F        R+  G+GLGL+I  + +N+  G +
Sbjct: 316 ADSIFESFTQLEDYMTRKHGGIGLGLAITHNLVNMLQGAI 355


>gi|182414239|ref|YP_001819305.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177841453|gb|ACB75705.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 349

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 24/250 (9%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V +    R E  L    E    AD  K+ F+ ++S+E+R+P+  +IG  +LL+ +   +L
Sbjct: 86  VEIGRRARVEHELRAAKETAEAADRAKSLFLAYLSHEIRTPVNGVIGVANLLRDT---AL 142

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q++ VE +  SS  LL ++ND+LDLA +++G + L        DL+ E++   A  +
Sbjct: 143 NPEQAELVETLQVSSAALLAILNDVLDLAKIESGRLVLERIDF---DLVEELQH--AMML 197

Query: 663 HENNIRIKVIS-----DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           H +    K +      D  + + V  D  RL QI   ++ NA+ F+ +G  V+    R +
Sbjct: 198 HADAAAYKKLDLSLEIDRAVPTRVRGDPLRLRQIVLNLVGNAVKFTERGRVVV--KVRFD 255

Query: 717 G------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           G           V + G  +P     S+F  FV       RR  G GLGL+I      L 
Sbjct: 256 GPTAEGLQLRCEVIDTGIGVPRCAQASLFQPFVQAECSTARRYGGTGLGLAICRRLAELM 315

Query: 769 GGHVSISSSD 778
            G + ++S +
Sbjct: 316 HGEIGVTSVE 325


>gi|317056869|ref|YP_004105336.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315449138|gb|ADU22702.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 508

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 14/235 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L   +++KN F+  VS+ELR+PLT I G+T+ + T        K+   V  I++ +  
Sbjct: 246 EELSNTEQMKNEFISSVSHELRTPLTAIKGWTETVATMYGDVETFKKGMRV--INSETER 303

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS----DG 675
           L  +V ++LD + +    + L   TI   D+L E+ +++   +++   R+  I+    + 
Sbjct: 304 LSQMVEELLDFSRIQDNRLMLQMDTI---DILAELGETVL--IYQERARVLGITLNYFEP 358

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +  FV  D+ RL Q+F  ++ NA+ +S KG TV ++A  + G+   SV + G  I ++ 
Sbjct: 359 DMLPFVYGDKNRLRQVFINVVDNAIKYSDKGDTVSVEAYEEEGEICISVSDTGIGISKED 418

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  +F        RRG G+GL++ +  I  HGG ++I S     TT+   +P
Sbjct: 419 LPRIKQKFFKANQ--TRRGSGIGLAVADEIIARHGGTLTIDSEQGVGTTVMITLP 471


>gi|295097697|emb|CBK86787.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 772

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 131/242 (54%), Gaps = 30/242 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L S+Q +Y
Sbjct: 259 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTSEQEKY 315

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLN----EVKQSIATK 661
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L DL N    + +Q   + 
Sbjct: 316 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENLSGLQAQQKGLSF 375

Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           + E  + +  KV++DG          RL QI   ++SNA+ F+ KG  V ++   D GD 
Sbjct: 376 VMEPTLPLPHKVVTDGT---------RLRQILWNLISNAVKFTQKGQ-VAVRIRYDEGDM 425

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP++    +F  +  V ++H G+   G G+GL++ +      GG ++++
Sbjct: 426 LHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKSMGGDITVA 485

Query: 776 SS 777
           S 
Sbjct: 486 SQ 487


>gi|255528504|ref|ZP_05395290.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255507808|gb|EET84262.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 392

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 547 DSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGS 601
           +++++     EK   L KA   ++++  F  ++S+ELR+PL  I     +L     ++G 
Sbjct: 105 EAIQSNIKYEEKKRLLNKAVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGL 164

Query: 602 LNSKQ---SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            N  Q    +Y+  I  +S  LL L+N+++D+  +DAG  ++  S   +  +  ++  S+
Sbjct: 165 DNDNQFKTDKYLHTIKQNSYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSV 224

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +   NIR+   ++ +      D  ++ +I   +LSNA+ F+ K  T+ +        
Sbjct: 225 VEYVENKNIRLIFDTEVEEKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNIYDSTDK 284

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I S+K+ G  I + M K +F++FV       RR  G G+GLS+V+S + +H G +S+ S
Sbjct: 285 VIISIKDTGIGIDKSMQKLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVS 344


>gi|171060877|ref|YP_001793226.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778322|gb|ACB36461.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1110

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 124/264 (46%), Gaps = 30/264 (11%)

Query: 539 MLTFVNVTDSVRAERALTEKNEAL--RKADEI----------------KNSFVQHVSYEL 580
           M TF ++T+  RAE+ +   N  L  R AD                  K++F+ ++S+E+
Sbjct: 433 MATFFDITEIRRAEQHVRALNADLERRVADRTGELLQAREAAEAANRAKSAFLANMSHEI 492

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  I+G   LL+     +     +Q +  +  ++  LL ++NDILDL+ ++AG ++L
Sbjct: 493 RTPMNAIVGLAHLLRRD---AHEPVAAQRLGQMIDAAGHLLQVINDILDLSKIEAGKLQL 549

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 L  LL      +A +     + + +  DG   +   D  RL Q    +L NA+ 
Sbjct: 550 EQLPFSLQALLARNCALVADRARAKGLAVAIEVDGVPDALSGDPTRLSQALLNLLGNAVK 609

Query: 701 FSSKGSTVILKA---ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           F+ +GS ++L+A   AR   D +   F V++ G  I  D    +F  F+       RR  
Sbjct: 610 FTEQGS-IVLRAECVARGTDDHLTVRFRVRDTGIGIAPDKLDQLFAPFMQADASTTRRFG 668

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL+I +      GG V + S
Sbjct: 669 GTGLGLAITQRLAATMGGEVGVRS 692


>gi|217958585|ref|YP_002337133.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
 gi|217065019|gb|ACJ79269.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
          Length = 896

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +   + +             D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKDWISI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|152969278|ref|YP_001334387.1| sensor protein KdpD [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150954127|gb|ABR76157.1| sensor for high-affinity potassium transport system [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 895

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 125/263 (47%), Gaps = 7/263 (2%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  S      LT   E  R   E   ++NS +  +S++LR+PLT + 
Sbjct: 624 IPEQQRLLETFTLLVASALERLTLTASEEQARLTSERESLRNSLLAALSHDLRTPLTVLF 683

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L T  L S  SK +     I         LVN++LD+A + +G   L+   + L 
Sbjct: 684 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLHKEWLTLE 742

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    + +   +   +I++ +    +L     D     ++   +L NA  ++   +++
Sbjct: 743 EVVGSALRMLEPSLGGQHIQLDLPDPLQL--VHVDGPLFERVLINLLENAHKYAGARASI 800

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            ++A  D       V +NG  IP    +++F++F          GVGLGL+I ++ +++H
Sbjct: 801 GIRAEADARQLSLEVWDNGPGIPAGQEQTIFDKFARGNKESAIPGVGLGLAICQAIVDVH 860

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +S S+  EG  +    +P +
Sbjct: 861 GGTISASNRPEGGASFRVTLPGE 883


>gi|24372448|ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
 gi|24346431|gb|AAN53935.1|AE015531_1 sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
          Length = 1765

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 131/247 (53%), Gaps = 12/247 (4%)

Query: 538  TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +++ V++T+  + ++  L  K+EA   A + K  F+ ++S+E+R+P+  IIG + L   
Sbjct: 1009 AVVSMVDMTELKLLSDELLVAKDEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            ++L   + KQ  Y+E I  +S  LL+++NDILD + ++AG + +   +  L+ +L ++  
Sbjct: 1068 TQL---DKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSD 1124

Query: 657  SIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILK 711
              + +  +  I +   ++       + D  RL Q+   +++NA+ F+ +G  +    +++
Sbjct: 1125 MFSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVE 1184

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
               D+    FSV+++G  + ++    +F  F        R+  G GLGL+I +  + L G
Sbjct: 1185 QQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMG 1244

Query: 770  GHVSISS 776
            G + + S
Sbjct: 1245 GSIGVES 1251


>gi|157371505|ref|YP_001479494.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Serratia proteamaculans 568]
 gi|157323269|gb|ABV42366.1| integral membrane sensor hybrid histidine kinase [Serratia
           proteamaculans 568]
          Length = 957

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    
Sbjct: 445 VLVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK--- 501

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L     + V  ++ SS +LL +++DILD + +++  +K+        +++  +  +   
Sbjct: 502 ALPQGVDRLVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLP 561

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   ++ D  RL Q+ S +L+NA+ F+  G  ++    R  G +
Sbjct: 562 LVVKKRLGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTGCIILQVCTR--GSY 619

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           + FSV++ G  IPE     +F+ F       QR  +G GLGL+I E  IN+  G +++ S
Sbjct: 620 LEFSVRDTGVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVES 679

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 680 EPGLGSLFTIRIP 692


>gi|71906191|ref|YP_283778.1| PAS [Dechloromonas aromatica RCB]
 gi|71845812|gb|AAZ45308.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1026

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 116/217 (53%), Gaps = 11/217 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+ELR+P+  IIG T LL     G+ N+ Q + +  +S ++  LL+L+NDIL
Sbjct: 647 KSTFLANMSHELRTPMNAIIGMTHLLIR---GNENASQREKLAKVSNAADHLLHLLNDIL 703

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQR 686
           DL+ ++A  + L    + ++D++         K+    ++       +L     + D  R
Sbjct: 704 DLSKIEAERLTLEKIPLRISDIVANAISMAGEKIAAKGLQFNQQISPQLVTTELIGDPLR 763

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           L QI   +L NA+ F+++GS  +  +  D    N     S+++ G+ IP++    +F  F
Sbjct: 764 LRQILLNLLDNALKFTAQGSISLSASVTDETSENLTIRISIEDTGTGIPDEAKDRIFAPF 823

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             V  +   Q  G GLGLSIV+  I+L  G + +SS+
Sbjct: 824 EQVDGSTTRQHGGTGLGLSIVKQLIHLMHGKIEVSST 860


>gi|322700316|gb|EFY92072.1| putative histidine kinase HHK1p [Metarhizium acridum CQMa 102]
          Length = 2549

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 15/224 (6%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ +VS+ELR+PL  +IG ++LL+ S    LN +Q +  + I  S+ +LL ++NDILD +
Sbjct: 1968 FLANVSHELRTPLNGVIGNSELLRDS---DLNREQLEMADSIRVSADLLLTVINDILDFS 2024

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRL 687
             ++A  MKL        +++ EV ++++    E   +  +K+I D  L   +   D  RL
Sbjct: 2025 KMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLPPMLIYGDPIRL 2084

Query: 688  LQIFSKILSNAMDFSSKGSTVI---LKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             Q+   ++ N++ F+  GS  I   L A  +D+    F V++ G  IP      +F  F 
Sbjct: 2085 HQVLGNLIGNSLKFTEDGSVTIGARLDAETKDSATLTFWVRDTGIGIPAQQLAKLFQPFS 2144

Query: 744  SNAHRGQRR--GVGLGLSIVESFIN-LHGGHVSISSSD-EGVTT 783
                   R+  G GLGLSI +S I  +  G + + S + EG T 
Sbjct: 2145 QADASTARKYGGSGLGLSICKSLIEIMMKGKIQLESEESEGTTA 2188


>gi|315918912|ref|ZP_07915152.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. D2]
 gi|313692787|gb|EFS29622.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. D2]
          Length = 462

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 138/248 (55%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    +D +K++F+ ++S+E+R+PL  IIGF+ LL +++     
Sbjct: 217 DITELKRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIIGFSSLLASTEDA--- 273

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++  Y   I  ++ +LLNL+ND++DL+ +++G ++L+   + L +LLNE   S+A  +H
Sbjct: 274 AEKELYNSLIGHNNKLLLNLINDVIDLSKIESGYIELHPDWVNLTELLNE---SVAEYVH 330

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++++++    +F+A  D+ R+ QI S  LSNA+  ++ G   +     D+     
Sbjct: 331 QVPSGVELLTNYPEHAFLAELDKLRIKQIVSNFLSNALKNTTTGHVEVFYEI-DHQFVRI 389

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  IP++M + +F RF       Q  G GLGLSI +  +    G + + S     
Sbjct: 390 GVKDTGRGIPQNMLEKIFERFEKLDSFVQ--GAGLGLSICKLIVEKMNGRILVDSQLGIG 447

Query: 782 TTINCRIP 789
           TT    +P
Sbjct: 448 TTFVIELP 455


>gi|262164925|ref|ZP_06032663.1| sensor protein TorS [Vibrio mimicus VM223]
 gi|262027305|gb|EEY45972.1| sensor protein TorS [Vibrio mimicus VM223]
          Length = 968

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 117/216 (54%), Gaps = 7/216 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   SL S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQET---SLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +ND+LD + ++AG ++++ +   L  L+ E  + + ++  E  I +     D     +  
Sbjct: 522 LNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVTRYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I  +    G  I F+V+++G  I E    S+F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPEGQGIRFAVEDSGIGIAEQDQASLFDA 641

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+ G GLGL+I    +   GG + +SS
Sbjct: 642 F-TQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSS 676


>gi|256422621|ref|YP_003123274.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
 gi|256037529|gb|ACU61073.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
          Length = 566

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 117/218 (53%), Gaps = 1/218 (0%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +E K +F+  +S+EL++P+ +I     LL  +++G++N +Q + V+ I+  +  LL + +
Sbjct: 338 NEAKTNFIATISHELKTPIASIKMSAQLLTDTRVGAVNREQEELVKSIADDANRLLKITS 397

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++L+++ V+ G ++L    +  + +++    +++    + NI I++ ++      + D +
Sbjct: 398 ELLNISQVETGHIQLKIEPVFPDIIIDNATNTVSALAQQKNIAIRIHNNTHAHKIMTDPE 457

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           +   + +  L+NA+ +S +   + L  +  N    FSV ++G  I E     +F+R+   
Sbjct: 458 KTAWVLTNFLTNAVKYSPEDGEIDLTTSIRNNSVEFSVADHGRGIEEKYLSRIFDRYFKV 517

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
               ++ G GLGLSI   FI   GG + + S+  EG T
Sbjct: 518 PGTPEKVGTGLGLSISREFIEAQGGTIWVDSTLGEGST 555


>gi|281358786|ref|ZP_06245261.1| integral membrane sensor signal transduction histidine kinase
           [Victivallis vadensis ATCC BAA-548]
 gi|281314741|gb|EFA98779.1| integral membrane sensor signal transduction histidine kinase
           [Victivallis vadensis ATCC BAA-548]
          Length = 626

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 3/216 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ FV  VS+EL++PLT+I  +++LL+         K+ +Y++ I+  S  L  LV ++L
Sbjct: 396 KSGFVSQVSHELKTPLTSIRMYSELLRDHLARLPQEKRERYLKVIADESERLTRLVGNVL 455

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D   +D G  + + + + L +L               N+ ++V         V DR  L+
Sbjct: 456 DFGRLDEGRKRYHPAPVDLCELAGATGALWKELAAAENMTVEVRLPETAAECVVDRDSLM 515

Query: 689 QIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
           Q+   + SNA+ ++ +G  + L  AAR +G +  +V++ G  IP    + +F +F  V +
Sbjct: 516 QVLYNLFSNALKYAGEGGKLDLTLAARADGRWTIAVRDYGPGIPAAAAEKIFRKFYRVDS 575

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +   +  G GLGL+I    +   GG + +     G 
Sbjct: 576 SLTAEVSGFGLGLAIARQLMRDQGGDLQLVRKSPGA 611


>gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1444

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 18/259 (6%)

Query: 531 IPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +P+P  Q        F ++T   +AE  LT   E    A  +K+ F+ ++S+E+R+P+  
Sbjct: 671 VPIPGEQGDRVWAGFFQDITAVKQAEAELTRAKELAEDATRMKSDFLANMSHEIRTPMNA 730

Query: 587 IIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           IIG + L LKT     L  +Q  YV+ I  +   LL ++NDILD + ++AG + + +   
Sbjct: 731 IIGMSHLTLKTP----LTPRQHDYVKKIQGAGQHLLGIINDILDFSKIEAGKLTVEHIGF 786

Query: 646 VLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            L+ +L+ +   +  K +  N+ +   V SD    + V D  RL QI     +NA+ F+ 
Sbjct: 787 DLDKVLDNIASLLTEKTNAKNLELVFDVPSDVPR-ALVGDSLRLGQILINYANNAVKFTE 845

Query: 704 KGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           KG   I+   ++         F+V++ G  I  +    +F  F        R+  G GLG
Sbjct: 846 KGEIDIIVRVQERTQTEVVLYFAVRDTGIGITPEQKARLFQSFEQADTSTTRKFGGTGLG 905

Query: 758 LSIVESFINLHGGHVSISS 776
           L+I +    L  G V + S
Sbjct: 906 LAISKKLAELMDGAVGVES 924


>gi|39726359|gb|AAR30122.1| putative histidine kinase HHK1p [Gibberella moniliformis]
          Length = 2362

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 17/248 (6%)

Query: 550  RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +A+ A  E    ++ A+E    K+ F+ +VS+ELR+PL  +IG ++LL+ S    LN  Q
Sbjct: 1918 KAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS---DLNKDQ 1974

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +  + I  S+ +LL ++NDILD + ++A  MKL        D++ EV ++++    E  
Sbjct: 1975 LEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKT 2034

Query: 667  IR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718
             +  +K++ +  L   +   D  RL Q+   ++ N++ F+  GS  I     K  +++  
Sbjct: 2035 SKKNVKIVQNINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETKEHAT 2094

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSIS 775
              F V++ G  IP      +F  F        R+  G GLGLSI +S I  +  G + + 
Sbjct: 2095 LTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLE 2154

Query: 776  SSDEGVTT 783
            S +   TT
Sbjct: 2155 SEENVGTT 2162


>gi|15616588|ref|NP_244894.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10176651|dbj|BAB07745.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 607

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K ++ +  FV +VS+ELR+PLT +  + + L    +   N    +++      +  ++ L
Sbjct: 372 KIEQERREFVANVSHELRTPLTTMKSYLEALDDGAMNDPNLA-PRFLHVTQNETERMIRL 430

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVA 682
           VND+L L+ +D    KLN S + L   L+++         E +I  I+ I+  K  +FV 
Sbjct: 431 VNDLLQLSKIDTHDYKLNLSWVDLGPYLHDMIDRHEIIAKEKDIHFIRKIT--KHATFVE 488

Query: 683 -DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D+ +L Q+   ILSNAM +S +G  V +       +   S+ + G  IP++    +F+R
Sbjct: 489 IDQDKLTQVIDNILSNAMKYSPEGGDVTITLLHQGHNVRVSISDQGMGIPKESQTKIFDR 548

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+I +  ++ HGG + + S  +  TTI   +P
Sbjct: 549 FYRVDKARARSVGGTGLGLAIAKELVHAHGGEIWVESKYKVGTTIYFTLP 598


>gi|294501111|ref|YP_003564811.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
 gi|294351048|gb|ADE71377.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
          Length = 590

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 171/358 (47%), Gaps = 43/358 (12%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV  F  DG I ++NP    F   W  E++       +  + A             L
Sbjct: 264 MADGVITFSRDGSILITNPPAEHFLQTWYYEQD--VNNQQVPELPANVVH---------L 312

Query: 500 FAAIITSFDDERKS---LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           F  ++ + + ER +   +QG   ++  S       PL N QT      +  +V   R ++
Sbjct: 313 FQTVVET-ETERSAELKIQGKTWVILMS-------PLYN-QT-----KIRGAVAVLRDMS 358

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+    RK D+ +  F+ +VS+ELR+P++ + G+++ +    + S + ++ +  + I   
Sbjct: 359 EE----RKLDKSRKDFIANVSHELRTPISMLQGYSEAI-IDDIASTDEEKKEIAQVIYDE 413

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  +  LVN++LDLA ++AG ++L+  ++ + +    V +       E +I++ +  +GK
Sbjct: 414 SLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSL--NGK 471

Query: 677 L-GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +   F A  D  R+ Q+ + ++ NA+  +     V L   +   +   SV++ G+ IP++
Sbjct: 472 IEDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQSEIHLSVQDTGAGIPKE 531

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF RF     A    + G GLGL+I ++ +  H G +++ S     TT   ++P
Sbjct: 532 DLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLP 589


>gi|229126416|ref|ZP_04255431.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4]
 gi|228656996|gb|EEL12819.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4]
          Length = 883

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|189424785|ref|YP_001951962.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421044|gb|ACD95442.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 881

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 10/236 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+S   +  L E   +   A+  K+ F+ ++S+E+R+P+  ++G   LL+ ++     
Sbjct: 482 DITESKHYQEELLEARHSAEAANRAKSEFLANMSHEIRTPMNGVVGMAQLLRYTQP---T 538

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y++ +  S   LL L+NDILDL+ +++G ++L  +   L   + EV  + A+++ 
Sbjct: 539 REQEEYLDNLELSCKNLLELINDILDLSRIESGKLELEAAVFSLRSCIQEVVSNQASRIE 598

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-D 718
           +  +++    D ++    V D  R  QI   +L NA+ F+  GS  +   + + ++ G  
Sbjct: 599 QKGLQLLTSLDEQVPEQVVGDSLRFKQILLNLLGNAIKFTEAGSITVSGQISSRQETGCT 658

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           F   V + G  + E+  + +FN F        R   G GLGL+I      L GG +
Sbjct: 659 FRLMVSDTGIGMTEETLQRIFNSFEQADSSTTRVYGGSGLGLAICRRLTELMGGRI 714


>gi|70730077|ref|YP_259816.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344376|gb|AAY91982.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 751

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 19/230 (8%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K+EA   A+  K+ F+  +S+ELR+PL  I+G  +LL+++ LG   S+  Q ++ +  + 
Sbjct: 258 KDEA-EAANLAKSRFLATMSHELRTPLNGILGMAELLRSAPLG---SQDRQRLQALHQAG 313

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+++N++L  A ++ G  +       L  LL EV   +  +   N  R+++  D +L
Sbjct: 314 EGLLSILNEVLSFARLEEGESRPEVRDFSLRQLLEEVTTLLQPRAEANRTRLELHIDEQL 373

Query: 678 GSFVADRQR-----LLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGS 728
               A RQ+     L Q+ S +L+NA+ F+  G       +L +A +       V++NG 
Sbjct: 374 ----APRQQGAEQYLRQVLSNLLANAIRFTEDGWVRVEVQVLHSAAEGQRLRCCVRDNGI 429

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I   M + +F RFV  +    RR  G GLGL+I +  +    G + + S
Sbjct: 430 GIAASMREKIFERFVQASDEVSRRYGGTGLGLAICKHLLQQLDGRIGVDS 479


>gi|87311449|ref|ZP_01093569.1| response regulator/sensor histidine kinase [Blastopirellula marina
           DSM 3645]
 gi|87285861|gb|EAQ77775.1| response regulator/sensor histidine kinase [Blastopirellula marina
           DSM 3645]
          Length = 410

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +++E L+ +D  KN F+  +++ELR+PL  I+   ++++ S+L     ++ +  + +   
Sbjct: 159 KQSETLQNSDRRKNEFLATLAHELRNPLAPILSAVEVIRLSELS--KEEEIEVYDIVKRQ 216

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              ++ L++D+LD++ +    ++L      L D++    ++    + E N ++ V     
Sbjct: 217 VQHMVRLIDDLLDISRISRDKIQLRREIFQLGDVVKNAVETSTPLIAEANHQLSVKQPSA 276

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  R+ Q+ + +L+NA  ++  G  + L  A   G    SVK+NG  IP ++  
Sbjct: 277 PIEIFGDAVRISQVIANLLNNAAKYTPDGGRIELSVALQEGLVAISVKDNGIGIPPELLS 336

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            VF  F  V       + G+G+GL++V+  + +HGG + + S+ EG
Sbjct: 337 EVFEMFNQVDKHLDLSKGGLGIGLTLVKRLVEMHGGKIDVISAGEG 382


>gi|317121611|ref|YP_004101614.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
 gi|315591591|gb|ADU50887.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
          Length = 482

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 25/244 (10%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  E++  A  ++  FV   S+ELR+PLT I+G  DLL+  +      +Q+Q +E     
Sbjct: 235 EMLESIETAYRLQQRFVSDASHELRAPLTAILGNLDLLR-RRPDLPPEEQAQALEEARRE 293

Query: 617 STILLNLVNDILDLATVDAGIM----KLNYSTIVLNDL-----LNEVKQSIATKMHENNI 667
           +  L  LV D+L LA  DAG+      ++   +VL+       L + +Q +   +    +
Sbjct: 294 AERLSRLVADLLALARADAGVPLVRKAVDVDAVVLDAFQEARRLAKGQQLVLDPL--EPV 351

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           RI+            D  R+ Q+   +L NA+ ++  G  ++L      GD + +V + G
Sbjct: 352 RIQ-----------GDADRIKQLLLILLDNAIKYTPAGGRIVLGLQDAGGDAVLTVADTG 400

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      VF RF     A      G GLGL I    +  HGG ++I S+    TT+ 
Sbjct: 401 VGIPAADLPHVFERFYRADPARSRDPGGTGLGLPIARWIVEQHGGSIAIDSAPGQGTTVT 460

Query: 786 CRIP 789
            R+P
Sbjct: 461 VRLP 464


>gi|291569373|dbj|BAI91645.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 582

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 125/237 (52%), Gaps = 16/237 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ + S+ELR+PL  +IGF  L+    +     ++ +++E    ++  LLNL+ND+
Sbjct: 342 LKSEFLANTSHELRTPLNGMIGFLQLV-LDGMADDPEEEREFIEEAHQAAIHLLNLINDV 400

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685
           LD+A ++AG M +  + + ++++L E++  I  ++ + N+++ + ++      +   + Q
Sbjct: 401 LDIAKIEAGKMDIELALVKVDEVLREIEHFIRPQVEQKNLKLTIQTEAGNSQIIVYGNYQ 460

Query: 686 RLLQIFSKILSNAMDFSSKGS----------TVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           R+LQ+   ++ N++ F+ KG            VI++  +  G   F V + G  +P +  
Sbjct: 461 RILQVMLNLVGNSIKFTHKGGINISLGIIRENVIIQNQQFPGFVEFRVVDTGIGVPIEKQ 520

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
             +F  F  V + +  Q  G GLGL I +  +   GG V   S  EG+ +T+   IP
Sbjct: 521 DRLFQAFSQVDSGYTKQYGGTGLGLVISQKLVQAMGGKVKFYSLGEGLGSTVTFTIP 577


>gi|312115953|ref|YP_004013549.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311221082|gb|ADP72450.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 650

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 119/234 (50%), Gaps = 6/234 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E   +A+ +K +F+ ++S+E R+P+  I+ +      +  GS  ++  + +  I 
Sbjct: 399 LKTAKEQADEANRLKTAFLMNMSHEFRTPMHAILNYAAFGLKAARGSDEARLERCLTNIQ 458

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL ++N +LDL+ +++    L+     L D+ +     + + + E  +R++  + 
Sbjct: 459 TAGDRLLGMLNALLDLSKLESAWSDLDKERGNLMDVAHSAGVELGSLVEEKALRLRFEAQ 518

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFS-VKNNGSS 729
                 V D +R++Q+F  + SNA+ FS KG T+ +     A  D G+ I   ++++G  
Sbjct: 519 TSDLEAVFDARRMMQVFVNLFSNAIKFSPKGGTITVTMSDDAMPDGGEAIHCHIEDHGLG 578

Query: 730 IPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           IPED  + VF++F  ++       G GLGL+I    + LHGG +  + S  G +
Sbjct: 579 IPEDELERVFDKFTQSSKTDTGAGGSGLGLTICREIVRLHGGRIWAAPSANGAS 632


>gi|290892663|ref|ZP_06555655.1| histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557723|gb|EFD91245.1| histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 591

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 8/235 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +R  + +++ FV +VS+EL++P+T + GF + LL  +    +  K+  ++  I   S  L
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKK--FLTIIKEESDRL 416

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ DIL L+ ++   +  N   + +++++ +  ++I     E NIR+  I +   GS 
Sbjct: 417 HRLIMDILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRV-TIPEKTSGSV 475

Query: 681 V--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      V
Sbjct: 476 MIETDRDKLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDRV 535

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 536 FERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|239626561|ref|ZP_04669592.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516707|gb|EEQ56573.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 686

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 122/237 (51%), Gaps = 19/237 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV-- 610
           +AL    E  ++A E K+SF+  +S+++R+P+  IIG T +  +      +S + + V  
Sbjct: 288 KALMTAYETAKEASEAKSSFLAQMSHDIRTPMNAIIGMTAIAMS------HSHEPERVED 341

Query: 611 --EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             E I+ SS+ LL L++D+LD++ ++ G M+L  +   ++ L++EV   I     E    
Sbjct: 342 CLEKINMSSSHLLALIDDVLDMSRIEKGKMQLMDAPFCMDKLVDEVVTIIRPSAEERGHS 401

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARDNGDFIF 721
           +KV  +D K    + D  RL Q+   ++SN++ ++    TV      + +     G+F+F
Sbjct: 402 LKVDTADLKHRRLIGDSGRLRQVLLNLMSNSVKYTPGNGTVKLTVKEVAQRVAGFGNFVF 461

Query: 722 SVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V+++G  + E+  K +F  F+          +G GLG+ I +  IN   G + + S
Sbjct: 462 IVEDSGIGMTEEFRKYIFVPFLREEKVRETHIQGTGLGMPITQGIINAMQGSIQVES 518


>gi|163732941|ref|ZP_02140385.1| hypothetical protein RLO149_09785 [Roseobacter litoralis Och 149]
 gi|161393476|gb|EDQ17801.1| hypothetical protein RLO149_09785 [Roseobacter litoralis Och 149]
          Length = 515

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 160/374 (42%), Gaps = 27/374 (7%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY----KKNTETEGIVFQKAI 237
           +L+ K L   I   +   D+    +W  D  G + W N +Y    K+  +TE     K +
Sbjct: 138 SLRFKNLQQEIEDLRRASDTTPHAIWQVDSEGSVTWHNAAYTALYKRLHQTEPDPC-KPV 196

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI--AIDV 295
            +    F E   ++ +S+             L   ++K +  V V  S G+  I  A+DV
Sbjct: 197 FDIAPSFHETAGRQRVSAQ------------LPDNDHKDWYDVNVA-SVGDIMIFHAVDV 243

Query: 296 S----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           +     E    + +    +    L++ +AIFD+N  L   N + ++L E+   FL+  P+
Sbjct: 244 NAVVKSEAAQRNFVQTLAKTFAQLSIGLAIFDRNGQLALFNPALIDLTELPADFLSGRPT 303

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPR 409
                + +R   ++PE  N+ +W++ I  V  ++    +++TW L  GQT  V    +P 
Sbjct: 304 LMSFFDRIRENRRMPEPKNYHSWRQQITEVIAAATDGRYQETWTLETGQTYRVSGRPHPD 363

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G   ++ E+++ +V L   +   +++    +D   E + VF   G +   N A+R LW  
Sbjct: 364 GAIAFLIEDISAEVSLTRNFRAELELGQSLMDTFDEAIVVFSSTGVLTFCNLAYRELWGL 423

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           + +       I +           +  W+     +  F  E+ S   T  LLS + ++ +
Sbjct: 424 DPDNSFADVTINDSVGAWQENCAPNKLWEGLIDFVLDF-GEKTSWHMTASLLSGAEVKCT 482

Query: 530 IIPLPNAQTMLTFV 543
           +  + +  T++ F 
Sbjct: 483 VSRISSGATVVRFA 496


>gi|172057001|ref|YP_001813461.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989522|gb|ACB60444.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 856

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K+ FV  VS+ELR+PL +I G+T+L+    L     +Q +Y+  I + +  L +LVN
Sbjct: 613 DRMKSEFVSTVSHELRTPLASIFGYTELMLAKDLPV--DRQQRYLTTIHSETQRLTSLVN 670

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D LD+  +++   +  +  + L +L+ EV +  A     + + ++   D  L    AD  
Sbjct: 671 DFLDVQRMESSQQQYQFVKLDLRNLIQEVAEFHAGSTSHHQLTLET-GDRPLRWIEADEP 729

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           ++ Q+F  +++NA+ +S  G  + LK           + + G  IP+     +F++F  V
Sbjct: 730 KMRQLFGNLINNAIKYSPDGGEIELKLEELEDRLRIQIIDEGIGIPQHALPELFSKFYRV 789

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            N+   +  G GLGL+I +  +  H G + + S++   +     +P
Sbjct: 790 DNSDSRKIGGTGLGLAICQEIVRAHDGLIHVESTEGSGSIFTIELP 835


>gi|229074991|ref|ZP_04207993.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
 gi|228708048|gb|EEL60219.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
          Length = 312

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 3/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +  R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I 
Sbjct: 74  LKESIDEERQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIY 132

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              T L  L+ND+ +   V    + L  + I + +LL ++      ++ E NI  +    
Sbjct: 133 GKVTRLNALMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANIECRPSFP 192

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +    +AD  +L+++F  ++ NA+ + ++G  + L A   N      + N G  IP   
Sbjct: 193 SQKLMVLADGDKLVRVFENLIINAIAYGNEGGYIDLTAYESNNMITIDITNYGQPIPSTD 252

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F RF  V  +      G GLGL+I +S + LH G + + S D+  T     +P K
Sbjct: 253 LPHIFERFYRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 311


>gi|229096389|ref|ZP_04227361.1| hypothetical protein bcere0020_16370 [Bacillus cereus Rock3-29]
 gi|228686951|gb|EEL40857.1| hypothetical protein bcere0020_16370 [Bacillus cereus Rock3-29]
          Length = 246

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 130/243 (53%), Gaps = 13/243 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QYV  
Sbjct: 3   KSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSHGEECGQYVSI 61

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   S  L N V D+L+   ++   ++L+ + + +  L+ +V      ++ + N+   + 
Sbjct: 62  LKRKSYELKNQVEDLLEYCQINYREIELHKNVVDMKALIEQVMIDFLPQLDDANMSFYIK 121

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S+ +L   + D   ++++F  I+SN++ +   G  + ++ ++   +    +KN G  IP 
Sbjct: 122 SNEELYVKI-DVAIIVRLFENIISNSIMYGKDGKEISIQISQRERNVEVEIKNFGQCIPT 180

Query: 733 DMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                VF +F    +RG++       G G+GL+I  S   LH G +++ S+D+  T    
Sbjct: 181 KSLPYVFEKF----YRGEKSRSSHTGGKGMGLAISRSIAQLHKGDITVCSNDKE-TIFTV 235

Query: 787 RIP 789
           ++P
Sbjct: 236 KLP 238


>gi|146280451|ref|YP_001170604.1| signal transduction histidine kinase [Pseudomonas stutzeri A1501]
 gi|145568656|gb|ABP77762.1| probable signal transduction histidine kinase [Pseudomonas stutzeri
           A1501]
          Length = 793

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 3/217 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ + ++  F+  VS+ELR+PLT+I G   L+ ++ +G +  +  + ++    +S  L  
Sbjct: 557 KRIERLQREFISTVSHELRTPLTSITGALALVCSNVMGEVPGQMRELLDIAQQNSQRLGA 616

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++D+LD+  + AG M+ +     L   L    +S  +    + ++++ + D        
Sbjct: 617 LIDDLLDMDKLHAGKMRFDLLEQPLLPQLELALRSNGSYAERHGVQLR-LGDCPAVQVEI 675

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+ S +LSNA  FS  G  V L A   +G    SV++ G  I ++  + VF +F
Sbjct: 676 DAMRLQQVLSNLLSNAAKFSPPGEQVELSARMRDGHVRVSVRDRGPGISDEFRERVFQKF 735

Query: 743 VS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               ++   Q+ G GLGL+I +  I   GG +   S+
Sbjct: 736 AQADSSDSRQQGGTGLGLAISKELIEHMGGQIGFESA 772


>gi|119715905|ref|YP_922870.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536566|gb|ABL81183.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 750

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 17/220 (7%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  +IG T LL  ++L   +  Q +Y + +S + T LL L++DILD +
Sbjct: 91  FLATMSHEIRTPMNGVIGLTRLLLDTEL---DETQRRYAKGLSEAGTTLLTLIDDILDFS 147

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQRLLQ 689
            ++AG++ L  +       L+ V   +A      ++   ++ + D   G  V D  RL Q
Sbjct: 148 KIEAGMLDLERAPFDPRRTLDAVAGLVANSAARKDVELVVEAVPDLPAG-LVGDEARLRQ 206

Query: 690 IFSKILSNAMDFSSKGSTVIL-------KAARDNGD--FIFSVKNNGSSIPEDMCKSVFN 740
           +   + SNA+ F+S G  VI        + A   G+    F V + G  IP+     +F 
Sbjct: 207 VLLNLASNAVKFTSTGEVVIRATLDRSGQPAASPGETPVRFEVVDTGIGIPQAAQARLFR 266

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            F        RR  G GLGL+I    + L GG +   S +
Sbjct: 267 SFTQAEASTTRRYGGTGLGLAISRRLVRLMGGTIGFESQE 306


>gi|59711315|ref|YP_204091.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114]
 gi|59479416|gb|AAW85203.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114]
          Length = 744

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 16/249 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           DS +A+RA         K  ++K+ F+  +S+E+R+PL  I+G + LLK+S   +L  +Q
Sbjct: 354 DSYKAQRAA-------EKLAQVKSDFLARMSHEIRTPLNGILGISSLLKSS---NLTREQ 403

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  +      LL ++NDILD + ++   +K+N +   L+D+L  +           N
Sbjct: 404 QKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINSAPFKLSDVLENINAIYFPLCKNKN 463

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--FS 722
           +   + +      F+ +D+ RL QI   +LSNA  F+ KG   + L   + N D+   FS
Sbjct: 464 VLFSIENHVNPDVFINSDQVRLTQILFNLLSNAAKFTEKGKVKLTLSLNKHNSDYYLQFS 523

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +    +F  F  +     R+  G GLGL+IV+  ++L  G ++I+S+   
Sbjct: 524 VDDTGVGICAEEQTRMFEPFEQSGFSESRKFGGSGLGLAIVKQLLDLLKGKITINSTLGV 583

Query: 781 VTTINCRIP 789
            +T +  IP
Sbjct: 584 GSTFSVLIP 592


>gi|163849118|ref|YP_001637162.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222527091|ref|YP_002571562.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163670407|gb|ABY36773.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450970|gb|ACM55236.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 554

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 11/226 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PL  I+G+  LL  S   +++   + Y+E I +S   LL L++D+LD A
Sbjct: 311 FLATMSHELRTPLNAILGYAQLLHLSN--AVSEPHADYLERILSSGRHLLTLISDVLDFA 368

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++ G ++L Y  + +  L+ +V          N+ ++       +GS   D +RL Q+ 
Sbjct: 369 RIEQGALELEYRQVAIAPLVEDVATMTLPLAQRNHNQVITCYPADIGSIETDDRRLRQVL 428

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +L NA  F+ +G T+ L   R+    I    F V + G  IP D    +F  F     
Sbjct: 429 INLLGNAAKFTERG-TIRLNVVREQRHGIDGIRFDVIDTGIGIPRDKQDKLFKPFSQIDE 487

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPS 790
              RR  G GLGL++ +  +   GG + +  SD GV +T    +P+
Sbjct: 488 SVTRRYEGTGLGLALSKQIVLALGGTIDV-ESDFGVGSTFTVWLPT 532


>gi|282899742|ref|ZP_06307705.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195357|gb|EFA70291.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 407

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 4/230 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + +  +N  L +   +K+ F+  +S+ELR+P+  IIGF  +L   K   L+S Q+  
Sbjct: 154 RQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSSVQTDM 213

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  ++  L  L+N++LD + +D+G + L      L+ ++N     I + +    + +
Sbjct: 214 LKRILNNAKDLSMLLNEVLDFSKIDSGRLGLKAEIFDLSKMVNHTVDEIRSLVEAKKLSL 273

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V  D +      D  R+ QI   +LSNA+ F+ +G   +            S+++ G  
Sbjct: 274 SVEIDLENTLVFNDPVRVRQILINLLSNAIKFTERGCVWVRVTETSKSRIAISIRDTGIG 333

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           I    C+ +F  F     +G  R   G GLGL+I++S + + GG + + S
Sbjct: 334 ISNQDCEHIFEAF-RQVDQGMSRKYPGTGLGLAIIDSLVKIMGGKIMLES 382


>gi|171914206|ref|ZP_02929676.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Verrucomicrobium spinosum DSM 4136]
          Length = 2178

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 125/252 (49%), Gaps = 21/252 (8%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A RAL +K   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+++Q  +
Sbjct: 1484 QARRALEDKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLAENSAGNLSTRQVDF 1543

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LLNL+NDILDL+ +++G + +    I    L + V+++        N+  
Sbjct: 1544 ARNIHSAGSDLLNLINDILDLSKIESGTVSVEAEEITFATLRDSVERNFRHIAENKNLPF 1603

Query: 670  KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------------AR 714
            K+  D  L   F  D +RL QI   +LSNA  F+S+GS V LK               +R
Sbjct: 1604 KLDFDPGLPRHFSTDPKRLQQIVKNLLSNAFKFTSQGS-VNLKVGLASEGWSPDHPVLSR 1662

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
                   ++K+ G  I  +  + +F  F   A  G  R   G GLGL+I      L GG 
Sbjct: 1663 VPSVMSIAIKDTGIGIVPEKQRLIFEAF-QQADAGTSRKYGGTGLGLAISRELATLLGGE 1721

Query: 772  VSISS-SDEGVT 782
            + + S + EG T
Sbjct: 1722 IRLHSVAGEGST 1733


>gi|163801498|ref|ZP_02195397.1| putative two-component sensor [Vibrio sp. AND4]
 gi|159174987|gb|EDP59787.1| putative two-component sensor [Vibrio sp. AND4]
          Length = 641

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  +    A+  K+ F+  +S+E+R+P+  I+G   LL  +KL   + +Q   V  I+
Sbjct: 230 IEEARDKAEVANRKKSEFLATMSHEIRTPMNGIVGIASLLNDTKL---DKQQKDLVNVIN 286

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS  L+ +++DILD + ++AG ++L  +   L DLL+EV +    K  + ++++    D
Sbjct: 287 SSSHSLMVIIDDILDFSKIEAGKIELEVTHYNLFDLLSEVGRLHTVKAQQKSLQLVCDID 346

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDN--GDFIFSVKNNGSS 729
            +L   V  D  RL Q+ + +L+NA+ F+ +G   +L  + +R     + +F V ++G  
Sbjct: 347 PQLPLEVEGDVGRLKQVLNNLLTNAVKFTERGYVKLLVSQVSRRGRVANVLFRVVDSGIG 406

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I ++  ++VF +F        R+  G GLGL+I    I + GG + ++S
Sbjct: 407 IAKENQQAVFEKFQQADGSTMRKYGGTGLGLAICSRLIEVMGGKILLTS 455


>gi|90022553|ref|YP_528380.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952153|gb|ABD82168.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 614

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 130/246 (52%), Gaps = 20/246 (8%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLK 595
           QT+L      + +RAERAL+           +K  F+ ++S+ELR+PL  IIGFT  LLK
Sbjct: 367 QTLLNEYLQEEKLRAERALS-----------VKTDFLANMSHELRTPLNAIIGFTVRLLK 415

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             K   L ++Q   +E I  +   LL ++NDILDL+ ++A  + L+ +++ L  L  ++ 
Sbjct: 416 --KKDQLQNQQVNAMEVIERNGRHLLAMINDILDLSKIEANKLDLHIASVELPQLCADIM 473

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             I+    E ++RI      ++     D  RL QI   +LSNA+ ++  G  V +K AR+
Sbjct: 474 GQISLAAEEKSLRIDY-EYVEVPIIQTDSVRLSQILLNLLSNAIKYTESGG-VSVKIARN 531

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGH 771
           + D I  ++ + G  I E   K +F+RF     R +    +G GLGL+IV +   +    
Sbjct: 532 SIDSITLTIADTGVGISEADQKKLFSRFEQFDDRTKFQVGKGTGLGLAIVANLCKILSIQ 591

Query: 772 VSISSS 777
           VS+ S+
Sbjct: 592 VSVEST 597


>gi|325262671|ref|ZP_08129407.1| sensor protein VanS (Vancomycin resistance protein vanS)
           [Clostridium sp. D5]
 gi|324031765|gb|EGB93044.1| sensor protein VanS (Vancomycin resistance protein vanS)
           [Clostridium sp. D5]
          Length = 386

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 6/236 (2%)

Query: 557 EKNEALRKADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           E+N  + K +E  KN  + +++++L++PLT+IIG+  +L  +K     +++ +Y   +  
Sbjct: 152 ERNTRVIKEEEKRKNDMITYLAHDLKTPLTSIIGYLSMLDEAK-DMPQAQREKYTRIVFD 210

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  L  L+ +  D+   +   + L   T+ L+ +L ++       + + +  I+ +  G
Sbjct: 211 KSLQLEGLIQEFFDITRYNLNQIVLEKETLDLSYMLVQLADEFYPILQQGDNYIE-LEIG 269

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  +L ++F  +L NA+ +S  G+ V+++   D  +    ++N G +IP++  
Sbjct: 270 QEILVYGDAVKLARVFQNVLKNAVAYSYPGTAVVIRTETDGDEVKIYIQNRGKTIPKEKL 329

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +FN+F     A  G   G GLGL+I    + LH G +   S  E VTT   RIP
Sbjct: 330 PYIFNKFYRTDEARSGNTGGAGLGLAIAREIVILHEGDICAESEGE-VTTFIMRIP 384


>gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1014

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISA 615
           ++ E L + D  K +F  +VS+E R+PLT ++G   D+L +   G+L    ++ ++ +  
Sbjct: 358 KRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLAS---GTLPEAAARELDVVHR 414

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++T LL LVN +LD + ++AG ++ ++  + L     ++  S  +      + + V    
Sbjct: 415 NATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSFRSVAERAGLTLTVDCPP 474

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
               F  DR+   +I   +LSNA  F+ +G+  +   AR  G     + + G+ IP +  
Sbjct: 475 LPAPFYVDREMWEKIVLNLLSNAFKFTFQGTITVRLRAR-TGQAWLEILDTGTGIPPEDL 533

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +F RF  V  A      G G+GL++V+    L GG V + S
Sbjct: 534 PHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVES 576



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 19/250 (7%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-----SL 602
            +R E +L E + EAL++A ++++ F+   S+EL++PL       +L++ S LG     SL
Sbjct: 772  MRRESSLQEARAEALKRAVQVRDEFLSIASHELKTPLMAFRLQLELIERS-LGPESRLSL 830

Query: 603  NSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             S+ S     ++      LN LV  +LD++ +  G + L+   + L +++ E  + +   
Sbjct: 831  ASRLS-----VAGRQVQRLNTLVETLLDVSQLSMGRLMLHLEEVDLAEVVGETVEQLRGS 885

Query: 662  MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +      + V  +  L G +  DR R  ++   +L NA+ +  +G  + ++A ++ G   
Sbjct: 886  LERAGCSLTVEVERPLVGRY--DRVRFERVVMNLLDNALKYG-EGKPLRVRAWKEQGISR 942

Query: 721  FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             +V + G  I PED  + +F RF       Q  G+GLGL I    +  HGGH+ + S+  
Sbjct: 943  LTVADQGMGISPEDQAR-IFERFERAVPGRQYGGLGLGLWIARQVVEAHGGHIQVDSTPG 1001

Query: 780  GVTTINCRIP 789
              TT   +IP
Sbjct: 1002 QGTTFTVQIP 1011


>gi|326793261|ref|YP_004311082.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
 gi|326544025|gb|ADZ85884.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
          Length = 817

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 169/360 (46%), Gaps = 26/360 (7%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           S+ +A+   DGR++  N A+ S+  WK  E           I  + S +    D    F 
Sbjct: 438 SDLMAIIAMDGRVEKVNGAWESVLGWKPSEL----------IGRSSSDFVYREDQQRFFE 487

Query: 502 AIITSFDDERKS----LQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALT 556
                 ++ER       +G  +  S   +E+SI    N Q  + T  +++     E A  
Sbjct: 488 KKFC-INNERAVRGIICRGYCKNKSYKWIEWSIKYTSNKQYYVCTGRDISKQKEQEEARK 546

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQS----QYVE 611
              EAL+  ++IK+ F  ++S+E R+PL  I+    LL K  K G +N + +    +Y+ 
Sbjct: 547 VYEEALQ-IEKIKSEFFANMSHEFRTPLNIILATVQLLEKGIKQGHINVQPNFDLVKYLS 605

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  ++  +L L N+I++L ++D G  K+    + + +++ E   S+A  +    I +  
Sbjct: 606 TVKQNTYRILRLSNNIMELTSIDTGHYKMKLENLNIVNVIEETTLSVADYIESRGITLLF 665

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            +D +      D ++L +I   ILSN++ ++ +G  + +  +  +   I  VK+ G  IP
Sbjct: 666 DTDVEEVITACDAEKLERIILNILSNSVKYTYRGGIISVNLSLQDEGLIVVVKDTGVGIP 725

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   ++FN F+       R+  G G+GL++V+S + +H G +   S     T I  + P
Sbjct: 726 KEKLTTIFNPFIQVDSLLTRKCEGSGIGLALVKSLVKMHEGTIDAKSELGKGTEIVIKFP 785


>gi|228932403|ref|ZP_04095285.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827339|gb|EEM73091.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 896

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|255533794|ref|YP_003094166.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346778|gb|ACU06104.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 1337

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 8/240 (3%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQYVEYI 613
            +T+ NE  ++  E K+ F+   S+EL++P+T+I GF  L K +   G+ +     Y++  
Sbjct: 1100 ITKTNELQKELMEKKDEFMSIASHELKTPITSIKGFLQLTKRAAAKGTADRDMLIYIDKA 1159

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRIKVI 672
            +     L  LVND+LD++ + AG M+ NYS   +  L+ E    +  T+ +E  I +K  
Sbjct: 1160 NRQLENLTFLVNDLLDVSKIQAGKMQFNYSEFNIRKLIAECVDDMQNTEGYE--ISLKHT 1217

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             D  +    AD+ R+ Q+    LSNA+ +S     VI+       +    V++ G  I  
Sbjct: 1218 DDIDI---YADQHRIEQVIKNFLSNAIKYSPDNKVVIVYTKLMGKEIRVCVQDFGIGIAP 1274

Query: 733  DMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            D  K VF+RF    H   Q  G+GLGL I    +  HGG + + S +   +    +IP K
Sbjct: 1275 DKAKLVFDRFFRVDHVNYQFSGLGLGLYICAEIVTRHGGTIGVQSEEGKGSEFWFQIPLK 1334


>gi|170077489|ref|YP_001734127.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885158|gb|ACA98871.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 764

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +A   A+  K  F+  +S+ELR+PL  I+G  +LLK S   +L+  +   ++ IS
Sbjct: 369 LIEAKQAAENANRTKTRFLSSMSHELRTPLNAILGLVELLKDSD--NLDEYERGDLQTIS 426

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+L+ DILD++ ++AG ++L++  +     L  +K  I  +++ + I       
Sbjct: 427 DSGIHLLHLIEDILDISRIEAGRVELHFQEVDFPKFLQGIKGIIQAQINTDAIEFICEFP 486

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNN 726
            KL + V+ D ++L Q+   +L NA  F+ KG  +         D         F V+++
Sbjct: 487 PKLPAVVSIDEKKLKQVLLNLLHNAAKFTEKGQIIFRLKLHSFPDLSETYTLLNFEVEDS 546

Query: 727 GSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  I  D    +F  F      + + +G GLGL+I +  + + GG +S++S
Sbjct: 547 GIGIEPDKLNLIFLPFEQTGKAKFKTQGTGLGLAISQEIVRMMGGKISVTS 597


>gi|170681062|ref|YP_001744182.1| hybrid sensory histidine kinase TorS [Escherichia coli SMS-3-5]
 gi|170518780|gb|ACB16958.1| TMAO reductase system sensor TorS [Escherichia coli SMS-3-5]
          Length = 900

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNT-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    I +   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|153941140|ref|YP_001391824.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
 gi|152937036|gb|ABS42534.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
          Length = 569

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF++ LK          + ++++ I+  +  L 
Sbjct: 340 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 396

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL L+ ++    +L    I LN+L+ +V   +     + NIRI ++ + K+   +
Sbjct: 397 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLI 455

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            ++ +  Q+   ++ NA+ ++     V +   +D G+ +F V++ G  I E+    +F R
Sbjct: 456 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFER 515

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +    G + + S  +  T    +IP
Sbjct: 516 FYRVDKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|311277818|ref|YP_003940049.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747013|gb|ADO46765.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 775

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHISAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++   D GD 
Sbjct: 381 VMEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRVRYDAGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP++    +F  +  V ++H G+   G G+GL++ +      GG +++S
Sbjct: 431 LRFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKNMGGDITVS 490

Query: 776 S 776
           S
Sbjct: 491 S 491


>gi|294776221|ref|ZP_06741706.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|294449904|gb|EFG18419.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 757

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 6/236 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            VN+ +    E  L    +   +A E+K SF+ ++S+E+R+PL  I+GF++LL T K  S
Sbjct: 512 LVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNIS 570

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              K+ ++   I  ++ +LL LVND+L+L+ +++G M  +      +     V Q+    
Sbjct: 571 EEEKK-EFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVI 629

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
           +      IK   D  +   + DR RL Q+ +  L NA  F+S+G   +     ++  +  
Sbjct: 630 ILPPVEFIKEFPDEDVTIHI-DRMRLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIH 688

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V++ G+ IP++  + +F RF       Q  GVGLGL+I +  +    GH+ + S
Sbjct: 689 IFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAISKVIVEKMNGHIDVQS 742


>gi|284052778|ref|ZP_06382988.1| GAF sensor signal transduction histidine kinase [Arthrospira
           platensis str. Paraca]
          Length = 582

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 125/237 (52%), Gaps = 16/237 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ + S+ELR+PL  +IGF  L+    +     ++ +++E    ++  LLNL+ND+
Sbjct: 342 LKSEFLANTSHELRTPLNGMIGFLQLV-LDGMADDPEEEREFIEEAHQAAIHLLNLINDV 400

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQ 685
           LD+A ++AG M +  + + ++++L E++  I  ++ + N+++ + ++      +   + Q
Sbjct: 401 LDIAKIEAGKMDIELALVKVDEVLREIEHFIRPQVEQKNLKLTIQTEAGNSQIIVYGNYQ 460

Query: 686 RLLQIFSKILSNAMDFSSKGS----------TVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           R+LQ+   ++ N++ F+ KG            VI++  +  G   F V + G  +P +  
Sbjct: 461 RILQVMLNLVGNSIKFTHKGGINISLGIIRENVIIQNQQFPGFVEFRVVDTGIGVPIEKQ 520

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
             +F  F  V + +  Q  G GLGL I +  +   GG V   S  EG+ +T+   IP
Sbjct: 521 DRLFQAFSQVDSGYTKQYGGTGLGLVISQKLVQAMGGKVKFYSLGEGLGSTVTFTIP 577


>gi|197121601|ref|YP_002133552.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196171450|gb|ACG72423.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 746

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +TE   A+R  DE+    +Q VS++LR+PL+ + +G   L +        ++  +    +
Sbjct: 502 VTELRRAVRNRDEV----LQVVSHDLRTPLSAVTLGAAALTRLPDGPEAAAQARRAAARL 557

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +A+   +  L++D+LDL T++ G + +        DLL E    +        + + + +
Sbjct: 558 AAAGRRMNRLIDDLLDLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSA 617

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     DR R+LQ+   + SNA+  + +G+  +   A+ +G  IF V++ G  I + 
Sbjct: 618 APGLPPVACDRDRVLQVLGNVASNAVKATEEGAVCLAAEAQADGAVIFRVRDTGPGIADA 677

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
               VF+RF       + RG GLGL+I    +  HGG +   S+    TT++
Sbjct: 678 DLPHVFDRF-QRGSAARWRGSGLGLAIARGLVEAHGGRIWAESAPGAGTTVS 728


>gi|163744983|ref|ZP_02152343.1| Multi-sensor Signal Transduction Histidine Kinase [Oceanibulbus
           indolifex HEL-45]
 gi|161381801|gb|EDQ06210.1| Multi-sensor Signal Transduction Histidine Kinase [Oceanibulbus
           indolifex HEL-45]
          Length = 1048

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 14/239 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K ++IK+ FV  VS+ELR+PLT+I G   L+ T+    L     + ++   +++  L +
Sbjct: 682 KKLEQIKSEFVSTVSHELRTPLTSIKGALGLIDTTDNTRLLPAHIRLIDIARSNADRLSH 741

Query: 623 LVNDILDLATVDAGIMKLNYS----TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +VNDILDL  + +G +  ++     + V+ D +NE+     T  H N + ++ + D  L 
Sbjct: 742 IVNDILDLEKISSGEVMFDFHDADLSSVIRDSVNEMSPFATT--HNNTLGVQ-LPDAPLM 798

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             V D  R  Q+ + ++SNA  +S   S V ++A +     I  ++N G  +PE+    +
Sbjct: 799 VRV-DESRTRQVLANLISNACKYSDAKSEVQIRAEQLGDRAIVFIQNTGPGVPENFRPRI 857

Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCRIPSKE 792
           F  F S A     R   G GLGL+I    I   GG +   S   GVT     C I   E
Sbjct: 858 FQAF-SQADGSDTRAKGGTGLGLNITRQIIKRQGGTIGFESIPNGVTVFWFTCPIAEAE 915


>gi|332885318|gb|EGK05569.1| hypothetical protein HMPREF9456_02770 [Dysgonomonas mossii DSM
           22836]
          Length = 887

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 120/236 (50%), Gaps = 7/236 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISA 615
           +K   L ++D++  +    +S+ELR P+  I+G +D LL  S    +  ++  Y E ++A
Sbjct: 652 KKANLLDESDKLYKTLFNSISHELRIPIATIMGASDTLLADSHPEKV--RKELYSEILTA 709

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   L  LV ++L+++ ++ G + L+     +NDL N+V  ++  ++     R+ ++   
Sbjct: 710 SGR-LNRLVENLLNISRLETGKITLHTDWCDMNDLFNKVTDNLRDEL--KAYRLDIVVPQ 766

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +     D   + Q+   ++ N+  +S+ G+++ LK+  DN   I    + G   P D  
Sbjct: 767 TMPLVKLDFGLMEQVLHNLVYNSCKYSTPGTSIRLKSFYDNEYLIIQEMDRGPGFPPDTL 826

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             VFN+F    H+    G+GLGLSI + F+  H G +S+ +   G      +IP+K
Sbjct: 827 PFVFNKFFKTEHKAT-GGLGLGLSIAKGFVEAHKGTISVENRQNGGARFTIKIPTK 881


>gi|311112535|ref|YP_003983757.1| sensor histidine kinase [Rothia dentocariosa ATCC 17931]
 gi|310944029|gb|ADP40323.1| sensor histidine kinase [Rothia dentocariosa ATCC 17931]
          Length = 521

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 10/223 (4%)

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+   S+ELR+PL  I G++D+L+ ++   L       +  I + +  +  LV D+L L
Sbjct: 296 AFIADASHELRTPLAAIKGYSDMLRWTE--PLADGGQSSLARIDSQTERMSRLVEDLLLL 353

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A +D G  +  +  I L +LL E    +     ++  R+ V  +      +ADR ++ Q+
Sbjct: 354 ARLDEG-REPKFENIDLTELLVESVSDMQAAARDHIWRMDVPDEPV--EMIADRSQIQQV 410

Query: 691 FSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNA 746
              +LSNA   + +G+TVI  L+ + D  + + ++ +NG  I  +    +F+RF     A
Sbjct: 411 ILNLLSNARKHTDEGTTVIAGLRVSADRREALMTIVDNGPGIDPEFAPKIFDRFARADKA 470

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G     GLGL+IV++ + +HGG +S+ S   G T  + R+P
Sbjct: 471 RSGSDGTTGLGLAIVQAIVQVHGGLISVRSR-PGRTEFSVRLP 512


>gi|293391415|ref|ZP_06635749.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951949|gb|EFE02068.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 615

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 5/234 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + V AE+ L+E  + L K +  K + +  +S+ELR+PL  IIG + +L      + + 
Sbjct: 98  VQERVSAEKKLSEALDNLEKINRDKTTLMTTISHELRTPLNGIIGLSRILLEE---NPSE 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  Y++ I++S+  L ++ +DI+DL  +DA  ++LN     L  LLN++         E
Sbjct: 155 RQQNYLKTINSSALSLAHIFSDIIDLEKIDAKRIELNRKATDLYALLNDIANFALLMTEE 214

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            +++ +++    L +++  D  RL Q+   +++NA+ F+ +GS  +        +F   V
Sbjct: 215 KHLQFQLVCPPTLPNWLMLDGVRLNQVLWNLINNAVKFTQQGSVTLSVEQTAEEEFALRV 274

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            + G  I E   + +F  +        +  G G+GLS+ ++   L GG +++SS
Sbjct: 275 TDTGIGIAEQDLQKIFELYYQAGSDANKSLGSGIGLSVSKTIAQLMGGDLTVSS 328


>gi|284803022|ref|YP_003414887.1| hypothetical protein LM5578_2779 [Listeria monocytogenes 08-5578]
 gi|284996163|ref|YP_003417931.1| hypothetical protein LM5923_2728 [Listeria monocytogenes 08-5923]
 gi|284058584|gb|ADB69525.1| hypothetical protein LM5578_2779 [Listeria monocytogenes 08-5578]
 gi|284061630|gb|ADB72569.1| hypothetical protein LM5923_2728 [Listeria monocytogenes 08-5923]
          Length = 459

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 127/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L+K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L +   ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D    ++  D + L Q++S +L+NA+ F+ +   + +    +  +    V+++G  I +
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQDGNIQIHLYEEGTNVFVEVQDSGVGISK 398

Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            DM K +F+RF  +N  R +  G  GLGLSI +  I LH G V++ SS E  TT   ++P
Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457


>gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1521

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 12/255 (4%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            M    ++TD    E+ L         A   KN F+ ++S+E+R+PL  ++G   LL+ + 
Sbjct: 1121 MHMATDITDLKVMEQELKRAMAKAEAASLAKNEFLANMSHEIRTPLNGLLGMLQLLQLTI 1180

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            LG    +Q +++E   +S   LL ++NDILD++ +++G ++L+   + L ++   V    
Sbjct: 1181 LGG---EQREFLEIALSSGRSLLQILNDILDISKIESGKLELDDQELDLGEVAESVVAVF 1237

Query: 659  ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
              +     I + ++ D  L   F+AD+ RL QI   ++ NA  F+  GS ++    L   
Sbjct: 1238 RHQARMRGIEVALVMDKTLPRHFLADKVRLRQILFNLVGNATKFTESGSVLVEAYPLAHP 1297

Query: 714  RDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
              +G     FSV + G  IP+D    +F+ F  V  +   + +G GLGL IV   + L G
Sbjct: 1298 MPDGRAQLFFSVSDTGIGIPDDKMDQIFDPFTQVDGSFTRKYQGTGLGLGIVRRLVALMG 1357

Query: 770  GHVSISSSDEGVTTI 784
            G +++ S     TT+
Sbjct: 1358 GTIAVDSELGAGTTV 1372


>gi|149277501|ref|ZP_01883642.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
 gi|149231734|gb|EDM37112.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
          Length = 903

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 123/241 (51%), Gaps = 10/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   +AE+ L E  E   +  E K  F+  +S+E+R+PL  +IG   LL  +      
Sbjct: 510 DITHRKQAEKELIEAKEHALQLSEAKEMFLSVMSHEIRTPLNTVIGVAHLLLDN---DPL 566

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   +  +  S+  LLN++NDILDL  ++ G ++L      +  L  ++  S+   + 
Sbjct: 567 PGQMDDLNMLKFSAENLLNIINDILDLTKMETGHLQLETIPFNIQSLTRDIVSSLHINVS 626

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI- 720
                +++  D ++  F+  D+ RL Q+   +L NA+ F+ +G+  +I++   +N + + 
Sbjct: 627 SKGNILELDFDDRIPKFIKGDKIRLYQVLMNLLGNAIKFTDQGNILLIIRLLEENDEQVI 686

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F VK++G  IP++    +F+ F+       R   G GLGL+I +  + L G  +S+ S
Sbjct: 687 LYFEVKDSGIGIPKEKLSLIFDPFMQATTDTSRHYGGTGLGLTITQKMLQLLGAEISVQS 746

Query: 777 S 777
           S
Sbjct: 747 S 747


>gi|228913678|ref|ZP_04077305.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845966|gb|EEM90990.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 896

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|149178944|ref|ZP_01857521.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148842218|gb|EDL56604.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1165

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASS 617
            EA   A   K+ F+ ++S+E+R+PLT I+GF +LL+   +  S   K+ Q V+ I  + 
Sbjct: 757 QEAALAASHSKSEFLANMSHEIRTPLTAILGFAELLRNDHEFASSAGKREQAVKTIQEAG 816

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL ++NDILDL+ ++AG +++  ++  L ++L+ ++  +     E  + +    +  L
Sbjct: 817 NHLLTVINDILDLSKIEAGKVEIEKTSTQLFNILDHIESLLRPPAIEKGVELVTRIETPL 876

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN-GDFI-FSVKNNGSSIPED 733
              +  D  RL QI   ++ NA+ F+ KG   I +K   +N   F+ F ++++G  + + 
Sbjct: 877 PDLIETDSTRLRQILMNLVGNAVKFTDKGRIQIKVKFLEENESRFLKFEIEDSGPGMSDR 936

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
               +F  F     +   Q  G GLGL I      L GG VS++ ++ G  T
Sbjct: 937 QAAKMFMAFSQADTSVTRQHGGTGLGLVISRKLARLMGGDVSLAWTEPGKGT 988


>gi|47564964|ref|ZP_00236008.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
 gi|47558337|gb|EAL16661.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
          Length = 896

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVDFTVKDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF------------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +   + +  +               
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|297158052|gb|ADI07764.1| two-component system sensor kinase [Streptomyces bingchenggensis
           BCW-1]
          Length = 524

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L ++ E L   +     FV  +S+ELR+PLT I   T++L+  +  +L+   +  
Sbjct: 243 RAAERLEKRVEELSAREASSRRFVADMSHELRTPLTAITAVTEVLE-EETDALDPMIAPA 301

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ + + +  L +LV +++++   DAG  +L    +   D+ ++V   I  +   + + +
Sbjct: 302 VQLVVSETRRLNDLVENLMEVTRFDAGTARLVLDDV---DVADQVTACIDARAWLDAVEL 358

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               D + G     D +RL  I + ++ NA+     GS V +    ++ D +  V+++G 
Sbjct: 359 ----DAERGIMARLDPRRLDVILANLIGNALKHG--GSPVRVSVRPEDDDLLIRVRDHGP 412

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPED+   VF+RF  ++A R +  G GLGLSI     ++HGG ++  +  +G      R
Sbjct: 413 GIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALENAHIHGGEITADNHPDGGAVFTLR 472

Query: 788 IP 789
           +P
Sbjct: 473 LP 474


>gi|323528804|ref|YP_004230956.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385806|gb|ADX57896.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 943

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 15/252 (5%)

Query: 551 AERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           A R    + +A R+    A+++K+ F+  +S+EL+ PL N+IG    +K   L  L   +
Sbjct: 538 ASREALAREQAAREQALSANQLKDEFIAVLSHELKHPL-NLIG----VKAEMLPRLPEVR 592

Query: 607 SQYVEYISASS-----TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                + +A+S          +++D+LDL+ +  G + L  S + L  L+ ++  +    
Sbjct: 593 HLPAVWDAAASIRHAVRSQAQIIDDLLDLSRIQTGKLALEVSRVDLAALIADIADTCEED 652

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            H   + ++V    +    +AD  R  QIF  +LSNAM F+  G  V ++ +RD      
Sbjct: 653 AHARGVALQVEVADEPAITLADPVRCEQIFWNLLSNAMKFTDSGGHVEVRLSRDGRMLRL 712

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG- 780
            V ++G  I       +F+ F        R G+G+GL++V   + +HGGHV   S   G 
Sbjct: 713 EVTDSGQGIEPATLPYIFDMFRQTPRGRSRGGLGIGLALVRQLVEMHGGHVKAESEGPGH 772

Query: 781 VTTINCRIPSKE 792
            T +   +P+ E
Sbjct: 773 GTRMTVWLPAME 784


>gi|262173923|ref|ZP_06041600.1| sensor protein TorS [Vibrio mimicus MB-451]
 gi|261891281|gb|EEY37268.1| sensor protein TorS [Vibrio mimicus MB-451]
          Length = 968

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 117/216 (54%), Gaps = 7/216 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   SL S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQET---SLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +ND+LD + ++AG ++++ +   L  L+ E  + + ++  E  I +     D     +  
Sbjct: 522 LNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVTRYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I  +    G  I F+V+++G  I E    S+F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPEGQGIHFAVEDSGIGIAEQDQASLFDA 641

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+ G GLGL+I    +   GG + +SS
Sbjct: 642 F-TQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSS 676


>gi|259502019|ref|ZP_05744921.1| sensor histidine kinase [Lactobacillus antri DSM 16041]
 gi|259170020|gb|EEW54515.1| sensor histidine kinase [Lactobacillus antri DSM 16041]
          Length = 375

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 24/242 (9%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-------YVEYISA 615
           RK ++ K+  + +VS++LR+PLT+IIG+        LG +  KQ Q       Y      
Sbjct: 144 RKIEKSKDELITNVSHDLRTPLTSIIGY--------LGLIEDKQYQSEEDILKYTHTAYE 195

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVIS 673
            +  + NLV D+ +   V      +N   I LN LL ++  S   +     I I  KV+ 
Sbjct: 196 KAKQMKNLVEDLFEYTKVQQHGAPVNIMRIDLNQLLEQLTASFELEAQHRGIEISSKVVP 255

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
           +  +    AD ++L ++F+ +++NA  + + G++ I   AR   D +  +V N+G+ IP 
Sbjct: 256 NPLM--IEADPEKLGRVFNNLVANAFKYGN-GASYIRVDARQRADQVEVTVANDGTPIPA 312

Query: 733 DMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F RF  + A R +   G GLGL+IV+S ++LH G V++ +SDE  T     +P 
Sbjct: 313 QSLDHLFERFYRAEASRSRATGGTGLGLAIVKSIVDLHHGTVTV-TSDENETAFVVTLPL 371

Query: 791 KE 792
           K+
Sbjct: 372 KQ 373


>gi|258623924|ref|ZP_05718877.1| sensor protein TorS [Vibrio mimicus VM603]
 gi|258583718|gb|EEW08514.1| sensor protein TorS [Vibrio mimicus VM603]
          Length = 968

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 118/216 (54%), Gaps = 7/216 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   SL S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQET---SLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +ND+LD + ++AG ++++ +   L  L+ E  + + ++  E  I +     D     +  
Sbjct: 522 LNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVTRYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I  +   +G  I F+V+++G  I E    S+F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPDGQGIRFAVEDSGIGIAEQDQVSLFDA 641

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+ G GLGL+I    +   GG + +SS
Sbjct: 642 F-TQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSS 676


>gi|229068657|ref|ZP_04201955.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185]
 gi|228714404|gb|EEL66281.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185]
          Length = 709

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 295 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 354

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 355 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 414

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 415 DTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 474

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 475 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 534

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 535 EGSTFTVYIPN 545


>gi|149176849|ref|ZP_01855459.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148844286|gb|EDL58639.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 818

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 131/254 (51%), Gaps = 11/254 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E AL +  +   +A+  K+ F+ ++S+E+R+P+  ++G+ D+L    LG L 
Sbjct: 396 DITARKEMEEALRDSEQQASQANLAKSEFLANMSHEIRTPMAAVLGYADVL----LGHLK 451

Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              ++  V  +  +   LL L+NDILDL+ ++AG ++++ +   L +L+ +V+  +  + 
Sbjct: 452 DPDNRNCVMIMKRNGEHLLELINDILDLSRIEAGKLEVDLNEASLRELVADVQTLMQVRA 511

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
            E N+ + V   G++    V D  RL QI   ++ NA+ F+ +G   ++++   D+   I
Sbjct: 512 DEKNLMLNVKFTGQVPEKIVTDATRLRQILINLIGNAIKFTDQGEVRLVIRLLPDSDKPI 571

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F+V++ G  +  D  + +F  F        R   G GLGL+I +  + +  G + + S
Sbjct: 572 IEFAVQDTGIGMSADQIQRLFKPFSQGDSSVTRAYGGSGLGLAISKRLVQMLKGQLKVKS 631

Query: 777 SDEGVTTINCRIPS 790
                +    R+P+
Sbjct: 632 EVGQGSIFRIRLPA 645


>gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
 gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
          Length = 1111

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 13/260 (5%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            V D +  E  L    E   + + +K++F+ ++S+E+R+PLT+IIGF +++       L  
Sbjct: 848  VLDRIEYEGELVSAKEEAERLNRMKSAFLANMSHEIRTPLTSIIGFAEVIGDEATSLLEH 907

Query: 605  KQS---------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              S         Q+ + I  S   LL  ++ +L+L+ ++AG M+L+ S + L D + E  
Sbjct: 908  SDSPPDAVTALDQFADLIEESGHRLLETLDTVLNLSRLEAGEMELDCSPLNLADEVAEAT 967

Query: 656  QSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                 +     I ++   ++G L + V D   L      ++SNA+ ++ +G TV ++A R
Sbjct: 968  DLFEPQALTEGIDLQGETAEGPLWARV-DEGGLRIALQNLISNALKYTEEGGTVRVRAGR 1026

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
               D    V++ G  +  D    +F  F   +    R   G GLGL++ +  I   GG +
Sbjct: 1027 RGDDVALEVEDTGVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLAVTKQAIEQMGGTI 1086

Query: 773  SISSSDEGVTTINCRIPSKE 792
            ++ ++    +    R+P+ +
Sbjct: 1087 AVETAKGEGSCFTVRVPAAD 1106


>gi|34497406|ref|NP_901621.1| two-component sensor [Chromobacterium violaceum ATCC 12472]
 gi|34330344|gb|AAQ59623.2| probable two-component sensor [Chromobacterium violaceum ATCC
           12472]
          Length = 562

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 118/244 (48%), Gaps = 10/244 (4%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  +++T+   AE  L    +    A+  K++F+  +S+E+R+P+  ++G  +LL  ++ 
Sbjct: 1   MACLDITERKMAEFELRMARDQANAANRAKSAFLATMSHEIRTPMNGVLGMLELLAMTR- 59

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+++QS  V  I  S+  LL L++DILD + ++A  +++  +   +   ++ V+    
Sbjct: 60  --LDAEQSDTVATIQDSANTLLRLIDDILDFSKIEADRLEIVPTRTAIRPFMDSVRSLYH 117

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               +  + + +  D KL  + V D  R+ QI    +SNA+ F++ G   I     D   
Sbjct: 118 ENASKKGLELTLTLDDKLAPTLVIDPLRVRQILQNFISNAIKFTASGKVDIRVKVMDTVA 177

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 F V++ G  + ++    +F  F        RR  G GLGL+I      L GGHV
Sbjct: 178 NYQVLSFEVEDTGIGMSQEQLSKLFQPFTQADSETTRRFGGTGLGLAICRRLAGLMGGHV 237

Query: 773 SISS 776
            + S
Sbjct: 238 EMES 241


>gi|284929545|ref|YP_003422067.1| GAF sensor hybrid histidine kinase [cyanobacterium UCYN-A]
 gi|284809989|gb|ADB95686.1| GAF sensor hybrid histidine kinase [cyanobacterium UCYN-A]
          Length = 757

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 125/242 (51%), Gaps = 15/242 (6%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNS--KQSQYVEYISASS 617
           A + A+  K+ F+ ++S+ELR+PLT IIG +  LL  SK  S  S  K+  Y+  I  S 
Sbjct: 373 ASQAANYSKSEFLGNMSHELRTPLTCIIGLSGTLLYWSKENSTLSLEKRKHYLATIQNSG 432

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATKMHEN-----NIRIKV 671
             LL ++N+IL+ + +  G   LN     L+D+   + Q +   ++H +     ++RI  
Sbjct: 433 ENLLQIINEILEYSNLQTGKCLLNIQEFSLSDIAKNILQKVYKEEVHRHINLKLDLRINS 492

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I D    +F+AD  ++  I   +L+NA+ F+ +  TVIL+  R   + ++ V++ G  I 
Sbjct: 493 IED----TFLADPVKMKHILYYLLNNALKFTPENGTVILRVWRHREEVVWQVEDTGIGIK 548

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +F  F  + N  +    G GLGL++ +  + LH G + + S     +    RIP
Sbjct: 549 TEQIPLLFKLFQKLENHRKRVYGGTGLGLALTKQLVELHSGTIEVDSLVNKGSIFTIRIP 608

Query: 790 SK 791
           ++
Sbjct: 609 NQ 610


>gi|260596161|ref|YP_003208732.1| aerobic respiration control sensor protein ArcB [Cronobacter
           turicensis z3032]
 gi|260215338|emb|CBA27320.1| Aerobic respiration control sensor protein arcB [Cronobacter
           turicensis z3032]
          Length = 779

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 122/240 (50%), Gaps = 28/240 (11%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L+++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLSAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KV++DG          RL QI   ++SNA+ F+ +G   +  +  DN   
Sbjct: 381 VMEPVRPVPHKVLTDGT---------RLRQILWNLISNAVKFTQQGQVTVRVSYNDNEQL 431

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            F V+++G  IP++    +F  +  V ++  G+   G G+GL++        GG +++SS
Sbjct: 432 RFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLAKSMGGDITVSS 491


>gi|254483583|ref|ZP_05096807.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214036145|gb|EEB76828.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 635

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 128/236 (54%), Gaps = 10/236 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT+   +   A E K+ F+ ++++E+R+P+T+I+G+ DLL   +L  +  ++ ++   + 
Sbjct: 234 LTKARRSAESASEAKSRFLANMTHEIRTPMTSIVGYADLLSAGELDDV--QKIKWRRQLI 291

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+  L  L+ ++LD+A V+AG   L+   I L D L++  ++   +    ++ + +   
Sbjct: 292 SSTRHLQELIGNVLDVAAVEAGKATLDLDRISLTDFLDDCVENQRPRAKSKDLELIIDYQ 351

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIFSVKNNGSSI 730
           G + +  V DR ++ QI + ++SNA+ ++ +G   V + AA  N     IF +++ G  +
Sbjct: 352 GTVPTEVVVDRVKVRQILTNLISNALKYTKEGYVKVTVSAAPVNSGCKLIFQIEDTGCGM 411

Query: 731 PEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             ++       F+R    ++  +  G GLGL++V S + L  G +  + S+EG  T
Sbjct: 412 APELINEAFLPFSRLHKTSNANEIEGAGLGLALVTSLLKLMQGSLE-AQSEEGRGT 466


>gi|189404980|ref|ZP_02812506.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC869]
 gi|261227155|ref|ZP_05941436.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255731|ref|ZP_05948264.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189372752|gb|EDU91168.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str.
           EC869]
          Length = 904

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +N+ILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNNILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F+  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 605 PFIQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 651


>gi|116622396|ref|YP_824552.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225558|gb|ABJ84267.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 610

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 18/232 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  +    A+  K++F+ ++S+ELR+PL+ I+  +DLL  S        Q + +  IS
Sbjct: 205 VVEARDQAESANRAKSAFLANMSHELRTPLSVILASSDLLNES---DPTPDQREDIARIS 261

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRIKV 671
            S   LL L++D+LD+A ++AG   L    I  +DL++ V+   + +  +  E  + +  
Sbjct: 262 HSGKHLLGLIDDVLDVAKIEAGKEDL---AIAASDLISTVRTVVEMMRVRAEEKCLSLVY 318

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKN 725
                +  +V  D  +L QI   +L NA+ F+ KG+  +  +A+   +     F F +++
Sbjct: 319 YQAPDVPRYVRVDAPKLRQILINLLGNAIKFTRKGTVKLQLSAKTGAEPGLARFSFDIED 378

Query: 726 NGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +G  +P+     +F  F VSN   G + G GLGL+I + F+ L GG + + S
Sbjct: 379 SGVGMPQHHLGRIFEPFEVSNP--GPQTGTGLGLTITQRFVELMGGTLVVKS 428


>gi|120611638|ref|YP_971316.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
 gi|120590102|gb|ABM33542.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
          Length = 663

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 160/361 (44%), Gaps = 45/361 (12%)

Query: 446 GVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           G+ +   DGR    NPA  R L +T +  L  G  I + A           GW  F    
Sbjct: 159 GIGLLERDGRFTDVNPAMARVLGRTRQEVL--GRAISDFAPP---------GWVDFVKDK 207

Query: 505 TSFDDERKSLQGTLELLSDS----VLEYSIIP-LPNAQTMLTFVNVT-----DSVRAERA 554
           T    +  + QG   L+  S     LE+SI   +     M    +++     DS R E  
Sbjct: 208 TVDTGQSATWQGEFPLMRPSGQWVYLEWSISAHVEPGMRMALAADISERVELDSRRQE-- 265

Query: 555 LTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           + E+ +A R   E     K+ F+  +S+ELR+PL  I G+  +LK         ++    
Sbjct: 266 VLEREQAARATAERLSRTKDDFIAVLSHELRTPLNAIAGWVHILK---------RRGGTP 316

Query: 611 EYISASSTILLN------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           E I    +I  N      +++DILD++ +++G + L        +++     ++   + E
Sbjct: 317 ELIKGLDSIHRNVKAQARIISDILDVSRINSGKLHLEREWTQPIEVVRSAIDALQASIAE 376

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            ++ I + +   +G    D  R  QIF  +L+NA+ FS+    + +  +RD+     +V+
Sbjct: 377 KHLEIVLRAGEDIGPAWLDPTRFQQIFWNLLTNAIKFSNDSGRIDVSLSRDDDALTLTVQ 436

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  +  + +F+RF  +     RR  G+GLGLSIV+    LHGG     S+  G  
Sbjct: 437 DFGRGISPEFIEHLFDRFTQSDSPDNRRHGGLGLGLSIVKHLAELHGGGAEAYSAGTGEG 496

Query: 783 T 783
           T
Sbjct: 497 T 497


>gi|86609900|ref|YP_478662.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558442|gb|ABD03399.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 834

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L + + +K+ F+  VS+ELR+P+TN+     LLKT++      K+ QY++ +        
Sbjct: 592 LERLNRLKDDFLSTVSHELRTPITNMRMAIQLLKTARA---PQKREQYLKILEQECEREA 648

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LDL  ++ G   L+   + L   L  V +    +   N  R++      +G  +
Sbjct: 649 ELVNDLLDLQRLEQGSKTLHLEEVPLATWLPSVLEPFLQRAQVNQQRLQWQIAPNVGKVL 708

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
            D+  L ++  ++++NA  ++  G ++ + A R     +   V N G  I     + +F 
Sbjct: 709 TDQGGLERVVQELVNNACKYTPPGCSIWVTAQRPGPQQVEIRVINEGVEISPAEQERIFE 768

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F  + +    +R G GLGL++V+ ++   GG VS+ SS +G T     +P 
Sbjct: 769 KFYRIPSGDPWKRGGTGLGLALVKQWMQRLGGSVSVESS-QGKTCFTLVLPQ 819


>gi|49477761|ref|YP_036666.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329317|gb|AAT59963.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 385

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A  +N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGNDGDYIDITAYENNNMIAIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S I LH G + + S D+  T
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIIELHKGTIEVYSDDKKTT 375


>gi|83954943|ref|ZP_00963621.1| histidine kinase [Sulfitobacter sp. NAS-14.1]
 gi|83840669|gb|EAP79841.1| histidine kinase [Sulfitobacter sp. NAS-14.1]
          Length = 463

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 4/249 (1%)

Query: 541 TFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           TF+    ++   R AL  +N+    A E K  F+  VS+ELR+PLT+I G  DL+     
Sbjct: 195 TFIKGYSALMKNRLALQTENKNALAASEAKTRFLSTVSHELRTPLTSIRGALDLINAGSA 254

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G +  K S+ ++  + +S  L +LV D+L L + D G   L+   + L +++N    S  
Sbjct: 255 GEVPDKMSRLLDIATRNSNRLGDLVGDLLLLQSADVGKFSLDLGNVDLAEVVNTAAHSFQ 314

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                  + ++V           D++RL Q+   +LSNA  FS  G T+ +   R++ + 
Sbjct: 315 PYASRFGVAVEVNVAADQPIVRGDKKRLDQVIVNLLSNAAKFSEAGGTIRVGLKREDENL 374

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           + SV + G  IPE     +F  F       QR+  G GLGLSI +  ++ HGG ++   S
Sbjct: 375 VISVADQGIGIPEGSESVIFEEFGQIDSSDQRKFQGTGLGLSISKRIVDAHGGSIAY-KS 433

Query: 778 DEGVTTINC 786
             GV T  C
Sbjct: 434 KLGVGTTFC 442


>gi|269836401|ref|YP_003318629.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785664|gb|ACZ37807.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 598

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 164/361 (45%), Gaps = 46/361 (12%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN------E 493
           ++HL++G+ +    G++ L N A   L  T  +RL     +    A   R ++      +
Sbjct: 255 VEHLTDGILIVDDQGQLALINNAAERLLGTPRDRL-----LNRPYALAVRDHDLAEVIAQ 309

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           +   D     +      R+ ++G         + YSI   P+  T +  +         R
Sbjct: 310 AHSGDEPVRRLFEIGQPRRYVEG---------VAYSI---PHRATPVVVIL--------R 349

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVE 611
            +TE    LR+ D I+  FV +VS+ELR+P+ ++     L++T   G+L  ++   +++ 
Sbjct: 350 DVTE----LRRTDMIRRDFVANVSHELRTPIASLKA---LVETLLDGALEDEEVAHEFLA 402

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +      L  LV D+L+L+  ++G + L+     +  +  +V   + T+     + I++
Sbjct: 403 RMETEVDGLARLVQDLLELSRAESGRLTLSPVAADIRRVAEQVIARLRTQAEPKKLDIRI 462

Query: 672 -ISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            I DG   G F  D +R+ Q+   ++ NA+ F+  G  + + AA ++   +  V + G  
Sbjct: 463 EIPDGLTPGRF--DPERIEQVLVNLVHNAVKFTPPGGIITVGAAAEDDHLVVWVADTGPG 520

Query: 730 I-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + PED  + +F RF          G GLGLSI    + LHGG + +  +    TTI   +
Sbjct: 521 VAPEDRDR-IFERFYKTDRSRADAGTGLGLSIARHLVELHGGRIWVDGTARPGTTIKFTL 579

Query: 789 P 789
           P
Sbjct: 580 P 580


>gi|114563977|ref|YP_751491.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
 gi|114335270|gb|ABI72652.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
          Length = 1632

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 109/209 (52%), Gaps = 10/209 (4%)

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            ++S+E+R+P+  ++G   L++ S    ++ +Q+ YV     ++  LL L+NDILD + +D
Sbjct: 909  NMSHEIRTPMNAVLGMLQLIQHS---DMSRQQADYVTKAENAAKSLLGLLNDILDFSKID 965

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
            AG ++L+     L  L+ E+   +A  +H  ++ +    D  +   +  D  RL Q+   
Sbjct: 966  AGKLELDLHPFQLETLMRELAVMLAANVHSQHLEVIFDLDPAIPYLIEGDELRLRQVLLN 1025

Query: 694  ILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            +  NA+ F+S+G  ++     +   +  +   S+ ++G  I  +    +F  FV      
Sbjct: 1026 LAGNAIKFTSEGHVIVGVQCNECTANQVNLTISITDSGIGISPEQSSKIFQGFVQAESST 1085

Query: 750  QRR--GVGLGLSIVESFINLHGGHVSISS 776
             RR  G GLGL+I +S + L GG +S+SS
Sbjct: 1086 SRRFGGTGLGLAITKSLVELMGGELSLSS 1114


>gi|229137795|ref|ZP_04266397.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
 gi|228645652|gb|EEL01884.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
          Length = 883

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +   + +             D+I  
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKDWISI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|256828151|ref|YP_003156879.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577327|gb|ACU88463.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 612

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 116/229 (50%), Gaps = 3/229 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ +++K+ FV   S+ELR+PLT++    DLL      +L  K  + +         + 
Sbjct: 377 LKQVEQLKSDFVMAASHELRTPLTSLGMSVDLLLEHASHNLAEKDRELLLAAHEEVHRMK 436

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +LV+D+LDL+ ++AG +++ +  + +      ++    ++M    +       G L    
Sbjct: 437 SLVSDLLDLSKIEAGRIEMEFEDVPVATFFEHMQSVFKSQMELKEVAFVSGIQGDLPLVR 496

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  ++  + S ++SNA+ + ++G  V L A +       SVK++G  IPE+    +F++
Sbjct: 497 ADANKIAWVLSNLVSNALRYVNRGGCVALMAQQFGAHVHLSVKDDGLGIPEEYQARIFHK 556

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FV    +GQ   G GLGL+I +  +  HGG + + S     +T    +P
Sbjct: 557 FVQV--KGQEAGGSGLGLAICKEIVRAHGGTIWVESVPGRGSTFTFTLP 603


>gi|254504175|ref|ZP_05116326.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
 gi|222440246|gb|EEE46925.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
          Length = 827

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 38/288 (13%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-----------------TEKNEALRK-- 564
           S +E    PLP    + T+ ++T+ V A   L                  EK EA RK  
Sbjct: 98  SYMEVKGGPLPGGGFVSTYSDITERVAARHQLLRQMEELKEARQATLDMMEKAEANRKRA 157

Query: 565 ---------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                    A + K+ F+  +S+E+R+P+  ++G  DLL  +    L+ +Q Q    +  
Sbjct: 158 EELREKAESATKAKDMFLAAMSHEIRTPMNGVVGMIDLLTHT---DLDDEQMQMAATVRD 214

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  LL ++NDILD + ++AG M L    + + D++  V +++        +      D 
Sbjct: 215 SAFALLTIINDILDFSKIEAGKMDLEMIPMSILDVVEGVGETMGPNACAKVLDFIAYCDP 274

Query: 676 KLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSI 730
           ++ + VA D+ RL QI   +L NA+ F+  G   +     + +       + V+++G  +
Sbjct: 275 RIPAEVAGDQVRLRQILFNLLGNAVKFTEAGQVTLRVDMNEISEGQATVRYQVQDHGIGM 334

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             +   ++F  F        RR  G GLGL+IV   +++ GG + + S
Sbjct: 335 TPEQTANLFQPFQQADVSTTRRFGGTGLGLTIVRRLVDMMGGTIDVES 382


>gi|218441012|ref|YP_002379341.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218173740|gb|ACK72473.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 477

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 110/218 (50%), Gaps = 9/218 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTIL 620
           L  A E +   V  VS+ELR+PLT + G+  L  T + GS L   Q + +E     +   
Sbjct: 249 LSDAWEHQRQLVSDVSHELRTPLTIVSGY--LQSTLRRGSNLTPTQREALEIAGMEADRT 306

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + L+ D+L+LA VD+G M     +I LND L +VK S   K  +  I  ++  +  L   
Sbjct: 307 IKLLQDLLNLARVDSGQMHFKLESINLNDWLTQVK-SKTEKYSDRQINWEIPPN--LIII 363

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  RLLQ+   ++ NA+ +S   + + +K  R     I  V + G  IP      +F 
Sbjct: 364 KADPDRLLQVLYNLIDNAIKYSDPQTPITVKLDRQQ-QAIIQVCDRGVGIPLQDQARIFE 422

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF  V         G GLGLSIV++F+   GG++S+SS
Sbjct: 423 RFYRVDETRSRSTGGTGLGLSIVKTFVEGMGGNISVSS 460


>gi|254481247|ref|ZP_05094492.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214038410|gb|EEB79072.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 642

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 11/227 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+ A   K++F+ ++S+E+R+PL  IIG T LL  +   + + K+  Y   I  S+  LL
Sbjct: 239 LKAATAAKSAFLANMSHEIRTPLNGIIGITSLLDQT---TDDKKRRAYYTTIENSANALL 295

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
            ++NDILDL+ ++AG  + + S   L+++ N V++       E  I  + V++       
Sbjct: 296 LIINDILDLSRIEAGRFEPDESNFKLDEVANHVRRVFEPSAKEKGIAFEAVLAPRTPLDL 355

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
             D +RL Q+   ++ N + F+ +G+  +  +A     D+    F V ++G  I  +  K
Sbjct: 356 TGDSRRLTQVIINLVGNGLKFTEEGAVSVAISAEDVSLDSATLHFQVFDSGIGITAEAQK 415

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEG 780
           ++F+ F        RR  G GLGLS+ +  + L GG + + S S EG
Sbjct: 416 NIFDDFSQVDGSITRRFGGTGLGLSVSKKLVELLGGEIGVQSRSGEG 462


>gi|147676477|ref|YP_001210692.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI]
 gi|146272574|dbj|BAF58323.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 2071

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 124/262 (47%), Gaps = 18/262 (6%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLL 594
            F+  T + R  R L E NE L++A E        K  F+  +S+E+R+ L  +IG  +LL
Sbjct: 1521 FLEQTVAART-RELQETNELLKQAKEAADAANRAKGKFLAVMSHEIRTTLNGLIGMAELL 1579

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +    LN +Q +YV  +   +  LL++VND+LD + ++ G + L   +     L+ + 
Sbjct: 1580 LDT---PLNGEQQEYVSAVRECADSLLSVVNDLLDFSRIEEGRLVLETVSFNPASLVEKS 1636

Query: 655  KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVI 709
               +     + ++ +K  I+    G+   D  RL Q+   +L NA+ F+ +G    S  +
Sbjct: 1637 VALVEPGARQKSLLLKYHIAPDVPGTLQGDPIRLRQVLLNLLGNAVKFTERGEISLSAFV 1696

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
                 D+    F V++ G  IPE+    +F  F     +  G+  G GLGLSI +  + L
Sbjct: 1697 EGREPDSLTVRFEVQDTGIGIPEEARSMLFRPFTQAGPSSAGRYGGAGLGLSICKRLVEL 1756

Query: 768  HGGHVSISSSDEGVTTINCRIP 789
             GG +   S +   +T    +P
Sbjct: 1757 MGGRIGFESEEGRGSTFWFSVP 1778


>gi|94313885|ref|YP_587094.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93357737|gb|ABF11825.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
          Length = 1122

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 125/252 (49%), Gaps = 9/252 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT + ++E  L +       A+  K++F+  +S+E+R+PL  ++G  +LL+ S   +L+
Sbjct: 491 DVTAARQSESTLLQAIHDADAANRAKSAFLATMSHEIRTPLNGMLGSIELLEVS---ALD 547

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q   +E +  S+  L+ ++ND+LD + ++AG M L      ++ L+ +V +  A    
Sbjct: 548 AAQRDQLEVMQQSAQSLIQIINDVLDFSKIEAGQMALQARPCQIDSLVEDVCRRFAPDAE 607

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFI 720
             ++++  + D  L    + D  +  Q+   ++SNA+ F+ +G  V+       G  D++
Sbjct: 608 RRSLQLLCVIDPALHAPILLDPLKTEQVLGNLVSNAIKFTEQGKVVVEATTMTEGGRDWL 667

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I  +  + +F  FV       RR  G GLGLSI    + L  G + + S 
Sbjct: 668 KLRVIDTGIGIAIEDQQRLFAPFVQAEQSDSRRFGGTGLGLSICNRLVGLMNGSIRLVSE 727

Query: 778 DEGVTTINCRIP 789
               +  + RIP
Sbjct: 728 PGLGSCFDVRIP 739


>gi|30260459|ref|NP_842836.1| sensor histidine kinase, putative [Bacillus anthracis str. Ames]
 gi|47777799|ref|YP_016896.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|65317711|ref|ZP_00390670.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|30253780|gb|AAP24322.1| putative sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47551504|gb|AAT29371.2| putative sensor histidine kinase [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 314

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI+++V+        +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPESTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I   ++ NA+ +   G T+ ++    +  +   + + G  IP+   ++VF R 
Sbjct: 199 DHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDLQNVFERM 258

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S     TT    IP
Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIP 307


>gi|315445373|ref|YP_004078252.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1]
 gi|315263676|gb|ADU00418.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1]
          Length = 1386

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+ R    + E L + D  K +F  ++S+E R+PLT I+     L+ +   +L     Q 
Sbjct: 328 RSYRTQQLRAEELAELDRAKTTFFSNISHEFRTPLTLILDPVSELRRAD--TLGDAARQE 385

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +   L  LVN +LD + ++AG  + +Y  + L  +  E+     + +    +  
Sbjct: 386 LDVVWRNGLRLTKLVNTLLDFSRIEAGRSQAHYQPVDLGAVTAELASVFRSAIERAGLVF 445

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            V     LG  V  D     ++   +LSNA+ F+ +GS V + A RD    + +V + G+
Sbjct: 446 DVDCP-PLGEQVYVDLDMWEKVIFNLLSNALKFTFEGS-VSVTARRDGRGAVITVSDTGT 503

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +P D    +F RF  + N       G G+GL++V+  + LHGG +   S++   TT   
Sbjct: 504 GVPADEMPRLFERFHRIENTRARSNEGSGIGLALVKELVGLHGGTIDADSAESRGTTFTI 563

Query: 787 RIP 789
           R+P
Sbjct: 564 RLP 566


>gi|307545331|ref|YP_003897810.1| periplasmic sensor signal transduction histidine kinase [Halomonas
           elongata DSM 2581]
 gi|307217355|emb|CBV42625.1| periplasmic sensor signal transduction histidine kinase [Halomonas
           elongata DSM 2581]
          Length = 917

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 115/237 (48%), Gaps = 8/237 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + L E N+ LR+ D +K+ FV  VS+ELR+PLT+I  F ++L+ ++      ++  +
Sbjct: 657 RIGQELREANDRLRELDRLKDEFVAMVSHELRTPLTSIRAFAEILRDNRELP-EQRREHF 715

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +   S  L  L+ +ILDLA +++G + L    + L  L ++  ++I     E  I +
Sbjct: 716 LDVVVRESQRLSRLIEEILDLARLESGRLTLEPQRLDLVPLTHQALEAIHRLQEERGIAL 775

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGS 728
           +   +      + D  RL Q+   ++ NA  F+   +  I L   R    F  +V +NG 
Sbjct: 776 ETAFEVDTAEVIGDPDRLEQVIINLIDNAGKFADAETPRISLHLTRHKHGFRLAVADNGP 835

Query: 729 SIPEDMCKSVFNRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            I E   + VF +F    H      R + RG GLGL I    +   GG + I  + E
Sbjct: 836 GIDEAERERVFEKFHQLPHADVGTMRSRPRGSGLGLPISRGIVAHLGGRLWIEDAAE 892


>gi|298241171|ref|ZP_06964978.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297554225|gb|EFH88089.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1110

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 5/235 (2%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N A ++ ++ K+ F+   S+EL++PLT +   T L++       + + +  +  +     
Sbjct: 876  NSAPKELEQRKDDFISMASHELKTPLTALKMQTQLVRKRLERQAHHEAATALSKVEGPVK 935

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L  LV ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      
Sbjct: 936  QLERLVGELLDVSKIQAGRLEYIRETVNLDALLHEVADTMQQISTTHTI---VVRGATSC 992

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            + V D+  L Q+F+ +LSNA+ +S    TV +  +         V+++G  IP +    +
Sbjct: 993  TLVGDKDWLGQVFTNLLSNAIKYSPGTETVEMDLSASPETVTIRVRDHGLGIPREQRDKI 1052

Query: 739  FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F RF   A   QR   G+G+GL IV   +  HGG +++ S     +T     P K
Sbjct: 1053 FERFYRVAGPRQRAIPGLGMGLYIVAEIVRGHGGTITVDSEVGKGSTFTVTFPKK 1107


>gi|283850337|ref|ZP_06367626.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574363|gb|EFC22334.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 943

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 123/251 (49%), Gaps = 14/251 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L         A   K+ F+ ++S+E+R+PL+ IIG T +  +    +   +  + +E
Sbjct: 428 ERDLERARRQAEAASRAKSDFLANMSHEIRTPLSGIIGLTQMTLSQ---TPRPEVRENLE 484

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  LL +VNDILD + ++AG M+ +     L + L+   +       +  +++ V
Sbjct: 485 MILDSSRSLLGIVNDILDFSKIEAGKMEFSSVDFDLREALDRTMKPFQFSSRQKGLKLSV 544

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---SVKNNG 727
            I+         D  R++Q+   ++ NA+ F+ +G   +       GD +    SV++ G
Sbjct: 545 RIASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQGEVAVEFRLLRPGDPLLVECSVRDTG 604

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISS-SDEGVT-- 782
             IPED    +F  F    A R +R  G GLGL+I    + + GG + + S S+ G T  
Sbjct: 605 IGIPEDRLPDLFQVFTQLEASRTKRFGGTGLGLAISRRLVEMMGGTIGVESRSNHGSTFS 664

Query: 783 -TINCRIPSKE 792
            T++ R P++E
Sbjct: 665 FTVSLR-PARE 674


>gi|27367329|ref|NP_762856.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27358898|gb|AAO07846.1|AE016811_87 Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 716

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 16/250 (6%)

Query: 540 LTFVNVTDSVRAERALTEKN----EALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592
           L F    D VR  R   +++    EA R A+   E K+ F+ ++S+E+R+PL  IIG +D
Sbjct: 199 LVFKLYIDQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIGLSD 258

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
              T    + + +  +Y++ I  S   LL L+NDILD++ +D+G + L      L D+++
Sbjct: 259 ---TDHYLNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVD 315

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           + +     +     +   +I+       F  D  RL QI S + SNA+ F+ +G   +  
Sbjct: 316 DTRVLFHERTQTPGVESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHEGQIKVAF 375

Query: 712 AARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
             ++ G        V + G  I E   + VF+ FV       R+  G GLGL+I +   N
Sbjct: 376 TVQNRGPNSVLQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTN 435

Query: 767 LHGGHVSISS 776
           L  G + I S
Sbjct: 436 LMQGTLRIES 445


>gi|121606932|ref|YP_984261.1| multi-sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595901|gb|ABM39340.1| multi-sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 553

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 4/226 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ + +K  F+  VS+ELR PL +I G   L+     G L +     V   + +S  L+
Sbjct: 302 LKRLERMKGEFISSVSHELRMPLVSIRGTLGLIAGGVAGELPAMVKNLVGIATNNSERLI 361

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDI+D  T+++G M      + L  LL +   +      ++NI++ +    +  S  
Sbjct: 362 RLLNDIIDSETIESGTMHFELRPVELLPLLAQAVAASEGFASQHNIKLILDGPAEAVSVN 421

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D  RL Q+ + +LSNA+ FS   ++V ++  R DNG     V ++G  IPE+  K +F 
Sbjct: 422 VDHDRLSQVIANLLSNAVKFSPPAASVRIRLLRLDNGRVRVEVADSGPGIPEEFGKRIFQ 481

Query: 741 RFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
               ++A   Q + G  LGL+I  S +   GG +   ++D G  ++
Sbjct: 482 SGPQADAPDTQLKDGTDLGLNISHSIVERMGGSMGF-TTDAGTGSV 526


>gi|95928336|ref|ZP_01311084.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135607|gb|EAT17258.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 867

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 124/239 (51%), Gaps = 25/239 (10%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+   +K+ F+   ++ELR+PLT ++GF+DLL  S   S   ++ +Y++ IS+ S  L  
Sbjct: 637 REMARLKSEFISTAAHELRTPLTAMLGFSDLLLESPDISAEERR-EYLQIISSKSESLAA 695

Query: 623 LVNDILDLATVDAG-IMKLNYSTIVLND----LLNEVKQSIATKM---HENNIRIKVISD 674
           +V+D+LDL+ +++G ++ L+   I L      L+ + + S        H N+I      D
Sbjct: 696 IVDDLLDLSRIESGRLITLDQKQIPLQQTLVGLIEQYRDSCPDHQFITHLNDI------D 749

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D  ++ Q+   +LSNA+ +S +G  + ++  R+   F+ ++ + G  +    
Sbjct: 750 SML---YIDENKMAQVIENLLSNAVKYSPEGGNISIETRREPDGFLLTIADQGIGMTPAQ 806

Query: 735 CKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +FN+F     +N   G   G+GLG+SI +  +  H G + + S+    TT   R+P
Sbjct: 807 VERIFNKFYRVDGTNTAVG---GLGLGMSIAKHIVEAHQGEIWVESTINQGTTSYVRLP 862


>gi|320159170|ref|YP_004191548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319934482|gb|ADV89345.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 716

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 16/250 (6%)

Query: 540 LTFVNVTDSVRAERALTEKN----EALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592
           L F    D VR  R   +++    EA R A+   E K+ F+ ++S+E+R+PL  IIG +D
Sbjct: 199 LVFKLYIDQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIGLSD 258

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
              T    + + +  +Y++ I  S   LL L+NDILD++ +D+G + L      L D+++
Sbjct: 259 ---TDHYLNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVD 315

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           + +     +     +   +I+       F  D  RL QI S + SNA+ F+ +G   +  
Sbjct: 316 DTRVLFHERTQTPGVESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHEGQIKVAF 375

Query: 712 AARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
             ++ G        V + G  I E   + VF+ FV       R+  G GLGL+I +   N
Sbjct: 376 TVQNRGPNSVLQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTN 435

Query: 767 LHGGHVSISS 776
           L  G + I S
Sbjct: 436 LMQGTLRIES 445


>gi|229101717|ref|ZP_04232434.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
 gi|228681665|gb|EEL35825.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
          Length = 883

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFNPIETTNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|309389652|gb|ADO77532.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 608

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 117/229 (51%), Gaps = 2/229 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ D +K+ FV  VS+E R+PLT++     ++     G LN +Q + +E        L 
Sbjct: 371 LKEIDNMKSEFVSTVSHEFRTPLTSMNMGLSMVINEDTGKLNEEQRELLEAAYEDVERLT 430

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LDL+ +++G +++ +  + +N+++ +       +  E  I +            
Sbjct: 431 GLVNDLLDLSKIESGRIEMEFDKVNINEIVEKTLDPFYKQAKEKEIALNFNKQENNIFAW 490

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  ++  + S ++ NA+ ++  G  + +KA       + SV ++G  IP++    +F++
Sbjct: 491 ADPTKVSWVISNLIGNALRYADNGE-IEIKAEVKGRRVLVSVTDDGPGIPKEYQSKIFDK 549

Query: 742 FVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FV   + + ++ G GLGL+I +  I  H G + + S +   +T +  IP
Sbjct: 550 FVRAGNDKNEKSGTGLGLAISKEIITAHNGRIWVESEEGNGSTFSFYIP 598


>gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 1272

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 127/270 (47%), Gaps = 20/270 (7%)

Query: 522 SDSVLEYSIIPL--PNAQTMLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHV 576
           S  + E+   PL   N     +F  V+D     + E  L    +    A   K+ F+ ++
Sbjct: 458 SKVICEFHATPLYDKNGVKTGSFAMVSDITHRKKMEEELIVARDKAEAATRAKSDFLANM 517

Query: 577 SYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           S+E+R+P+  ++G T L L+T     L  KQ  Y+  I  S+  LL ++NDILD + ++A
Sbjct: 518 SHEIRTPMNAVMGMTHLALQTD----LTPKQRDYLHKIQISANSLLGVINDILDFSKIEA 573

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG---SFVADRQRLLQIFS 692
           G M +      L+++L  +   IA K+ E    I+V+ D         V D  RL QI  
Sbjct: 574 GKMGMESIDFNLDEVLENLSTMIAVKLREKE-GIEVLFDTGADVPRQLVGDPLRLSQILV 632

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            + +N++ F+  G  V+       G+ +    FSV++ G  + E+    +F  F      
Sbjct: 633 NLANNSIKFTESGEIVVSTKVVSQGNHVIVLQFSVRDTGIGLTEEHMVQLFTAFSQADTS 692

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISS 776
             RR  G GLGLSI +  + + GG + + S
Sbjct: 693 ITRRYGGSGLGLSICQRLVKMMGGKIWVES 722


>gi|213401691|ref|XP_002171618.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999665|gb|EEB05325.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1777

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 13/246 (5%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++ D    E  L E N   ++    K  F+ ++S+E+R+PL  I G  + L  +   
Sbjct: 1118 TCTDIHDHKLLEEKLQEANREAQRMMNSKTRFLSNMSHEIRTPLVGITGMVNFLLDT--- 1174

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +L S+Q  Y   I  SS  LL+++NDILDL+ V+AG+MKL +    +  ++ +  ++++T
Sbjct: 1175 NLTSEQLDYAHTIQQSSEALLSVINDILDLSKVEAGMMKLTHEAFSVRSMMEDTNETLST 1234

Query: 661  KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 N+ +  + D  +   V  D+ RL Q+   ++ NA+ FS +G      + +     
Sbjct: 1235 LAFSKNLELNYVVDHDVPDMVIGDQARLRQVALNVIGNALKFSHEGEVFCQCSVKPTQGL 1294

Query: 720  I-------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
                    +   + G    ++  + +F  F  + ++   +  G GLGL I    I LH G
Sbjct: 1295 APNEIMLQWECYDTGPGFSKEDEEKIFKPFSQIDDSLTRKHGGSGLGLVISRELIELHEG 1354

Query: 771  HVSISS 776
             +S +S
Sbjct: 1355 TMSCTS 1360


>gi|171322587|ref|ZP_02911366.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
 gi|171092081|gb|EDT37503.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
          Length = 1001

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 129/256 (50%), Gaps = 15/256 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T   + E  L E  EA   A++ K++F+  +S+E+R+PL  I+G  +L++ + 
Sbjct: 490 LCTLTDITAHKQMEGMLREAREAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMERAP 549

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L +++ + ++ + +SS  LL ++ND+LDL+ V++  M L      L  +L +V    
Sbjct: 550 ---LPAEERRRLQTVMSSSDALLRVINDVLDLSKVESNQMVLEAVPFDLRAVLRDVAAIF 606

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                  ++ ++   D +L   +V D  RL QI S ++SNA+ F+ +GS  I   AR  G
Sbjct: 607 RPLAAARHLALECRIDPQLADGYVGDPTRLRQIVSNLVSNAIKFTERGSVTI--EARPTG 664

Query: 718 DFIFS------VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
               +      V++ G  I  +   ++F+ +V       RR  G GLGL +      L  
Sbjct: 665 AVGQAHGVEVVVRDTGIGIAPESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMH 724

Query: 770 GHVSISS-SDEGVTTI 784
           G +++ +   EG T I
Sbjct: 725 GDLAVETRPGEGATFI 740


>gi|156053696|ref|XP_001592774.1| hypothetical protein SS1G_05695 [Sclerotinia sclerotiorum 1980]
 gi|154703476|gb|EDO03215.1| hypothetical protein SS1G_05695 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2063

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 111/221 (50%), Gaps = 15/221 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I +S++ LL
Sbjct: 1340 LKEAMESKGKFLSNMSHEIRTPLIGISGMVSFLQDT---TLNDEQLDYTNTIQSSASSLL 1396

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            N++NDILDL+ VDAG+MKL+Y       L+ EV + ++T      + +  I D  +   V
Sbjct: 1397 NIINDILDLSKVDAGMMKLSYEWFHTRSLVEEVNEMVSTMAITKRLELNYIVDVDVPEMV 1456

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI-------FSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F++ G   T       D    +       +S+ + G    
Sbjct: 1457 KGDKFRIRQVLLNVIGNAIKFTTVGEVFTRCRVYVDDESPPLVNEIMLEYSIVDTGRGFT 1516

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
            ++    +F  F  +  +   Q  G GLGL I    + LH G
Sbjct: 1517 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVQLHDG 1557


>gi|116695564|ref|YP_841140.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530063|emb|CAJ96410.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 997

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 7/247 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            ++ RA++ L E   A   A + K +F   +S+E+R+PL++++G  +L+    LG L  +
Sbjct: 359 AEAARAQQLLHEARLASEAAAKAKVAFFASMSHEIRTPLSSLLGNMELVA---LGRLEPE 415

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   V  +  S+  LL +VND+LD + +D G M+L    +V+ +LL  +  S A      
Sbjct: 416 QRARVSSMQVSAEGLLQIVNDVLDFSKLDVGAMRLAEEPVVVTELLGRIAISHAPLAARR 475

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +    +   ++ + +  D  RL QI + +L NA  F+  G  ++L+A   + +    + 
Sbjct: 476 GLSFFAVYGKEIPARLNLDPVRLTQIINNLLGNAFKFTEAGK-IVLRAQWVDENLEIVIT 534

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IPE+  + +F  F  + N    Q  G GLGLSI    +    G +++ S     T
Sbjct: 535 DTGVGIPEEYKERLFQPFSQIGNNRLAQAGGTGLGLSICMRLVERMNGRITLDSVLGVGT 594

Query: 783 TINCRIP 789
            +  R+P
Sbjct: 595 RVTVRLP 601


>gi|309806641|ref|ZP_07700637.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808218|ref|ZP_07702127.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|308166946|gb|EFO69129.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168506|gb|EFO70615.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 01V1-a]
          Length = 396

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 136/255 (53%), Gaps = 14/255 (5%)

Query: 544 NVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +V DS+ A       A++E+    +  DE+    + ++S++LR+PLT+IIG+  LLK  +
Sbjct: 133 DVVDSINALVDSTCMAISEEKAVEKSKDEL----IANLSHDLRTPLTSIIGYMSLLKMHQ 188

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQS 657
              L +++ +Y+  +   S  + ++ ND+ + AT++ +   KL    I ++ L+ ++   
Sbjct: 189 NSMLPAQRQEYLNIVFDKSLQMKSMTNDLFEYATLNFSHDKKLELEQIKISSLIEQIAAG 248

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A +  +  I IK   + +      D ++++++F+ ++SNA+ +      + +   + + 
Sbjct: 249 FALEAEKKQIDIKTSCEPQDLEIAVDVKKIVRMFNNLISNAVKYGVGAKNIYVSVKKISN 308

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D +   V N+G +IP+D    +F+RF  V  +   +  G GLGL+I ++ + +H G +  
Sbjct: 309 DMVQIIVSNDGQAIPQDALGKLFDRFYRVEESRSPKTGGSGLGLAITKTIVEMHHGTI-F 367

Query: 775 SSSDEGVTTINCRIP 789
            +S++ +T+    +P
Sbjct: 368 CTSNQKLTSFIIDLP 382


>gi|295706458|ref|YP_003599533.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
 gi|294804117|gb|ADF41183.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
          Length = 590

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 171/358 (47%), Gaps = 43/358 (12%)

Query: 443 LSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++GV  F  DG I ++NP    F   W  E++       +  + A             L
Sbjct: 264 MADGVITFSRDGSILITNPPAEHFLQTWYYEQD--VNNQQVPELPANVVH---------L 312

Query: 500 FAAIITSFDDERKS---LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           F  ++ + + ER +   +QG   ++  S       PL N QT      +  +V   R ++
Sbjct: 313 FQTVVET-ETERSAELKIQGKTWVILMS-------PLYN-QT-----KIRGAVAVLRDMS 358

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+    RK D+ +  F+ +VS+ELR+P++ + G+++ +    + S + ++ +  + I   
Sbjct: 359 EE----RKLDKSRKDFIANVSHELRTPISMLQGYSEAI-IDDIASTDEEKKEIAQVIYDE 413

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  +  LVN++LDLA ++AG ++L+  ++ + +    V +       E +I++ +  +GK
Sbjct: 414 SLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSL--NGK 471

Query: 677 L-GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +   F A  D  R+ Q+ + ++ NA+  +     V L   +   +   SV++ G+ IP++
Sbjct: 472 VEDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQSEIHLSVQDTGAGIPKE 531

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF RF     A    + G GLGL+I ++ +  H G +++ S     TT   ++P
Sbjct: 532 DLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLP 589


>gi|167469186|ref|ZP_02333890.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis FV-1]
          Length = 850

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 421 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 480

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 481 ---QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLP 537

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD    
Sbjct: 538 LVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYL 596

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S 
Sbjct: 597 EFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISE 656

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 657 LGMGSIFAIRIP 668


>gi|162450925|ref|YP_001613292.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Sorangium cellulosum 'So ce 56']
 gi|161161507|emb|CAN92812.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Sorangium cellulosum 'So ce 56']
          Length = 1051

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 132/272 (48%), Gaps = 13/272 (4%)

Query: 526 LEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +++++ P+ + Q  + F+     +VT+  R ER + +  + L   D +K  FV +VS+E 
Sbjct: 153 IDFNLNPVKDRQGKVVFMIAEGRDVTEQRRLEREVAQHRDELATLDRLKTEFVANVSHEF 212

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT I+G  +   +S   SL       +     S+  LL LVN +LD + ++AG ++ 
Sbjct: 213 RTPLTLILGRVEDALSSPARSLAGDG---LAAAHRSTLRLLRLVNTLLDFSRIEAGRLQT 269

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +++   L  L  E+  S  + +    + + V           D  +  ++   +LSNA  
Sbjct: 270 SFAPTDLARLTAELASSFRSLIEGAGLSLVVDCPPLPEPVYVDAAQWEKVVMNLLSNAFK 329

Query: 701 FSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           F+ +G   + L+A  D+ +   +V++ G+ IP +    +F RF  V  A      G G+G
Sbjct: 330 FTFEGEIAVSLRAHPDHVE--LTVRDTGTGIPSEELPRIFERFHRVHGARGRSIEGTGIG 387

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LS+V+  +  HGG +  SS+    +     IP
Sbjct: 388 LSLVQELVKAHGGSLRASSTVGQGSAFTVAIP 419



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 109/220 (49%), Gaps = 17/220 (7%)

Query: 568  IKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYV----EYISASSTILLN 622
            +++ F+   S+EL++PLT + +    L++ +     +S++  ++      +   S  L  
Sbjct: 807  LRDEFLSIASHELKTPLTPLALQIQTLMRRAPELCPDSERLPWLMDRLGLVRRQSERLRR 866

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKV-ISDGKLGS 679
            LV ++LD++ + AG + L    + L+D++ +V        ++ E   R+ V  +D   GS
Sbjct: 867  LVENLLDISRISAGRLALELEQVRLSDIVRQVVSRFQEGGEIAEAGSRVTVSAADDAAGS 926

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +  DR RL Q+   ++SNA+ +  +G+ + +  A        ++ ++G  I ++    +F
Sbjct: 927  W--DRVRLEQVVENLVSNALKYG-QGNPIEITVASMGSMATLTIADHGIGIAQEHIGRIF 983

Query: 740  NRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             RF   VS  H G   G+G+GL I    +    G + +SS
Sbjct: 984  GRFERAVSARHYG---GLGMGLYITTQVVEALDGSIEVSS 1020


>gi|39937200|ref|NP_949476.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39651058|emb|CAE29581.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas
           palustris CGA009]
          Length = 348

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 115/220 (52%), Gaps = 2/220 (0%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F +++   R E  L++      +A   K   +  +S+E+R+PL  IIGF +++   + G 
Sbjct: 95  FRDLSQLQRTETELSQAKRLAERATGAKADVLARLSHEIRAPLNAIIGFAEVMIEERFGP 154

Query: 602 L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           L N +   Y++ I AS   ++ +V+D+LDL+ ++ G + L +++I LN+L+ +    +  
Sbjct: 155 LGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASINLNELVEQSVAVMQP 214

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719
           + +   I I+      L + VAD Q L QI   ++S ++  ++    VI+  A  D G+ 
Sbjct: 215 RANRERIIIRTSLAHSLPTVVADAQALRQIIMNLISTSIHLANAAGQVIVSTALSDAGEV 274

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           +  V++ GS + +D   +    F + + R +  GV L L+
Sbjct: 275 VLRVRDTGSRLNDDELAAALQPFRTPSDRTEAAGVSLSLT 314


>gi|119715628|ref|YP_922593.1| PAS sensor protein [Nocardioides sp. JS614]
 gi|119536289|gb|ABL80906.1| PAS sensor protein [Nocardioides sp. JS614]
          Length = 977

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 11/244 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +++  + T+    E  L    +A       K++F+  +S+E+R+PL  ++G T+L+ T++
Sbjct: 429 VISLSDSTERKEMELELGRARDAALAGSRAKSTFLATMSHEIRTPLNGVLGLTELMLTTR 488

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L   + +Q +Y E I  +   LL ++NDILD + ++AG ++L    + +  LL+E  + +
Sbjct: 489 L---DGQQGRYAEGIRVAGEALLQVINDILDFSKIEAGRLELEEVDLDVARLLDETARMV 545

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKA 712
           A    E  + + V    ++   +  D  RL Q+   + SNA+ F+  G  V+        
Sbjct: 546 AGPAQEKGLALVVRCSPEVPPGLRGDAVRLRQVLLNLTSNAIKFTRTGEVVLSAQLERAP 605

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             D     F V + G  I     + +F+ F        RR  G GLGL+I    +   GG
Sbjct: 606 VADVASVRFEVADTGIGIDPAQREHLFDAFTQADSTTTRRFGGTGLGLAISRQLVTAMGG 665

Query: 771 HVSI 774
            + +
Sbjct: 666 AIGV 669


>gi|294508517|ref|YP_003572576.1| sensor histidine kinase [Salinibacter ruber M8]
 gi|294344846|emb|CBH25624.1| sensor histidine kinase [Salinibacter ruber M8]
          Length = 491

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 118/238 (49%), Gaps = 4/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E LR+AD ++   V +VS++LRSP+ +I G+ + + + K G L  ++ Q     +
Sbjct: 246 LQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETV-SMKDGDLPPEERQRYVTTA 304

Query: 615 ASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +T  LN LVN++ +L+ ++   ++       + +L+ +V      +  E  + ++   
Sbjct: 305 LRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLRPDL 364

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +     AD   + +  S ++ NA+ ++ +G  V ++     G+   +V + G  IPED
Sbjct: 365 PERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNKQGEVCVAVADTGPGIPED 424

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RF  V  +    R G GLGL+I ++ + LHG  + + S+    T    R+P
Sbjct: 425 DLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTVFRFRLP 482


>gi|229894116|ref|ZP_04509302.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides A]
 gi|229704001|gb|EEO91014.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides A]
          Length = 704

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 199 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 258

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 259 ---QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLP 315

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD    
Sbjct: 316 LVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYL 374

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S 
Sbjct: 375 EFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISE 434

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 435 LGMGSIFAIRIP 446


>gi|229107946|ref|ZP_04237574.1| hypothetical protein bcere0018_2400 [Bacillus cereus Rock1-15]
 gi|228675508|gb|EEL30724.1| hypothetical protein bcere0018_2400 [Bacillus cereus Rock1-15]
          Length = 314

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI +++         +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEELNFSEVTREVLIEFLPELSKHNIELQIRIPESTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   +++I   ++ NA+ +   G T+ ++    + ++   + + G  IP+   ++VF R 
Sbjct: 199 DHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDLQNVFERM 258

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    TT    IP
Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIP 307


>gi|229120612|ref|ZP_04249857.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
 gi|228662897|gb|EEL18492.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
          Length = 896

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|237730129|ref|ZP_04560610.1| aerobic respiration control sensor protein ArcB [Citrobacter sp.
           30_2]
 gi|226908735|gb|EEH94653.1| aerobic respiration control sensor protein ArcB [Citrobacter sp.
           30_2]
          Length = 783

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 127/242 (52%), Gaps = 30/242 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 269 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 325

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++     +  +  +R 
Sbjct: 326 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRF 385

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D G+ 
Sbjct: 386 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTQQGQ-VTVRARYDQGNM 435

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++ +      GG +++S
Sbjct: 436 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKNMGGDITVS 495

Query: 776 SS 777
           S 
Sbjct: 496 SQ 497


>gi|254445933|ref|ZP_05059409.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198260241|gb|EDY84549.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1132

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 139/257 (54%), Gaps = 14/257 (5%)

Query: 544  NVTDSVRAERALTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            N+ + +  ER  T K EA       ++ +K++F+ +VS+E+R+P+  I+GF+ LL    +
Sbjct: 868  NILEDLVKER--TAKMEAALLLAEDSERLKSAFLANVSHEIRTPMNAIVGFSSLLDDPSV 925

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               ++++S+YVE I  +S  L++L++DI++++ +++  +        L+  L+E++Q   
Sbjct: 926  --THAERSEYVELIRENSDALISLIDDIVEVSRIESRQITSKRRPFDLDLKLDELQQFFK 983

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLL--QIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +   + + I+ ++       + +   LL  QI + ++ NA+ ++ +GS V      D  
Sbjct: 984  AESG-SRVTIRFLNRNLDRPTIIETDELLFGQIMTSLIGNAIKYTKQGS-VDFGYQIDGQ 1041

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
            + I  V + G  IPE+  + +F+RF     +     RG+GLGLSI +S +NL  G + + 
Sbjct: 1042 NIILYVSDTGIGIPEEEHEKIFDRFYKVTQKVSELYRGLGLGLSITKSLVNLLDGEIWLK 1101

Query: 776  SSDEGVTTINCRIPSKE 792
            S     +T   +IP K+
Sbjct: 1102 SKPGSGSTFYVKIPHKK 1118


>gi|283852698|ref|ZP_06369963.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571876|gb|EFC19871.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 832

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 20/224 (8%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  I+G   +L  +   SL+  Q  +++ I  S+T LL L+NDIL
Sbjct: 452 KSEFLANMSHEIRTPMNGILGMAQILGGT---SLDPAQQGFLKDIEDSATSLLTLINDIL 508

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D + ++A  ++L      L  +L  V+ ++     EN + + V ++       + D  RL
Sbjct: 509 DFSKIEADRLELARDPFGLRGVLASVEAALGVLARENGLELHVDVAPDVPDVLLGDADRL 568

Query: 688 LQIFSKILSNAMDFSSKGSTVI-----------LKAARD-NGDFIFSVKNNGSSI-PEDM 734
            Q+   ++ NA+ F+ +G  VI             A  D   + +FSV + G  I PED 
Sbjct: 569 RQVLVNLVGNAIKFTRRGGVVIGVQCVETCLAQESAGPDATQELVFSVSDTGIGIRPED- 627

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +F  F        RR  G GLGL+I    + L GG + + S
Sbjct: 628 ADRIFEAFTQADGSYTRRFGGTGLGLAITRRLVGLMGGVIGLES 671


>gi|209517561|ref|ZP_03266400.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia sp. H160]
 gi|209501974|gb|EEA01991.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia sp. H160]
          Length = 947

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 112/220 (50%), Gaps = 12/220 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN------SKQSQYVEYISASS 617
           +++ ++NS +  +S++LR+PLT I+GF+ +L   + G          +  + V+ I   +
Sbjct: 676 ESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQGRQGRPGRPAGEEKRDDELVDSIHEEA 735

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +  +V ++LD+A + AG ++LN    +L + +    ++    + +  +++ + +D  L
Sbjct: 736 LRMTGIVTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLADRPVQVSLPADLPL 795

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPED 733
                D   + ++FS +  NA  +++ G+ + + A +   D   F+  ++ +NG  +P  
Sbjct: 796 LHL--DAVLMERLFSNLFENAAKYTASGTPLAIGAQQIDADGAPFVRITIDDNGPGLPAG 853

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           M   VF +F        + G+GLGL+I  + +  HGG + 
Sbjct: 854 MEARVFEKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIG 893


>gi|220909146|ref|YP_002484457.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865757|gb|ACL46096.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1068

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ IK+ F+  +S+ELRSPL  I+G++ LL   K     +K  Q +  I  ++ +   L
Sbjct: 692 QANRIKDEFLAVLSHELRSPLNPILGWSKLLLNGK--LNLAKTQQALTTIERNARLQSEL 749

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + D+LD++ +  G + L+ S++ L   +    +++       +I+I+      +G    D
Sbjct: 750 IEDLLDVSRILQGKLSLSVSSVDLASTIQAAIETVRLAAEAKSIQIETRLAPDVGLVAGD 809

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+   ++SN + F+  G  V ++  +       ++ + G  I  D    VF+ F 
Sbjct: 810 STRLQQVVWNLVSNGVKFTPAGGRVAVRLEQLEQQAQITISDTGKGIAPDFLPHVFDYFR 869

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
                  R+  G+GLGL+IV   + LHGG +   S  EG+  T   R+P
Sbjct: 870 QEDGATTRKFGGLGLGLAIVRHLVELHGGTIQAHSPGEGLGATFTVRLP 918


>gi|170293890|gb|ACB13025.1| putative histidine kinase sensor/regulator [Hydrogenophaga sp.
           PL2G6]
          Length = 439

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 13/235 (5%)

Query: 551 AERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           AER   E   AL +A+     K+ F+  +S+E+R+P+  I+G   LL+T+   +L+++QS
Sbjct: 36  AERT-AELQMALDRAEASTRAKSEFLAMMSHEIRTPMNGILGMAQLLETT---TLDTEQS 91

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y++ I +S   LL L+NDILD + ++AG + L      L + +              ++
Sbjct: 92  DYLDAIRSSGETLLVLLNDILDFSKIEAGYLDLERQDFDLQEAIFSTLTLYRPMAEGKSL 151

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---SV 723
            +       L ++V  DR RL Q+ S +L+NA+ F+S+G   +  + R   D +    +V
Sbjct: 152 ALDHTFAAGLPTYVRGDRTRLRQVLSNLLANAIKFTSEGRVHVDVSVRRLADLLMLDVAV 211

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++ G  IP +    +F  F        RR  G GLGL+I         G +S+SS
Sbjct: 212 EDTGIGIPHNRLDQLFRAFTQVDSSTTRRYGGTGLGLAISARLCAAMDGDISVSS 266


>gi|183222354|ref|YP_001840350.1| putative sensor kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912401|ref|YP_001963956.1| two component response regulator sensor histidine kinase subunit
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167777077|gb|ABZ95378.1| Sensor histidine kinase of a two component complex [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780776|gb|ABZ99074.1| Putative sensor kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 791

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 14/242 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T++ + E  L    E    A+  K +F+ ++S+E+R+PL  IIGFT+LL  S    L 
Sbjct: 382 DLTETKKIEYTLRYAKELAEAANIAKGNFLANMSHEIRTPLNGIIGFTELLLNS---PLQ 438

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN--DLLNEVKQSIATK 661
            +Q +Y++ I  S   LL LVN ILD + +D+G  KL + +I  N  DL+          
Sbjct: 439 EEQKEYLKNIFFSGKSLLELVNQILDFSKIDSG--KLEFESINTNLIDLVQSTLDLFQVS 496

Query: 662 MHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF 719
                I + +  D  L  +V+ D  R+ QI S ++ NA+ F+ +GS  V L+    NGD+
Sbjct: 497 AASKGIALHIQIDPNLPKYVSLDPLRIRQILSNLIGNAIKFTHEGSVKVSLQQMERNGDY 556

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           +   F V + G  I  ++   +F+ F        R+  G GLGL+I    +      ++I
Sbjct: 557 VTISFEVSDTGIGIDMNVGSRLFDSFSQADTSITRKYGGSGLGLTITNELLLKMNSKLTI 616

Query: 775 SS 776
            S
Sbjct: 617 QS 618


>gi|20090134|ref|NP_616209.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
 gi|19915115|gb|AAM04689.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
          Length = 1456

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 125/257 (48%), Gaps = 24/257 (9%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +VT+  +AE+ L  K E L ++      F    S++L+ PL  I  +  LL+    G L+
Sbjct: 1202 DVTELKKAEKILELKLEELARSKADLEQFAYVSSHDLQEPLRMIASYLQLLQRRYQGELD 1261

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK---------LNYSTIVLNDLLNEV 654
             +  +Y+ +    ++ + +L+ND+L+ + V     +         LNY   VL+DL   +
Sbjct: 1262 ERADKYIYFAVDGASRMQSLINDLLEFSRVTTKAREFEPTDCESILNY---VLSDLEVSI 1318

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA 713
            K++ AT           +S   L   +AD  +L Q+F  ++SNA+ F SK +  I + A 
Sbjct: 1319 KENEAT-----------VSYDSLPEIMADGTQLTQVFQNLISNAIKFRSKEAPKIHVSAE 1367

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +++  + FSV++NG  I     + +F  F     R +  G G+GLSI +  I  HGG + 
Sbjct: 1368 KEDDKWRFSVQDNGIGINPKYSEKIFEVFKRLHKREEYPGTGIGLSICKKIIERHGGDIW 1427

Query: 774  ISSSDEGVTTINCRIPS 790
            + S     +T    +P+
Sbjct: 1428 VKSEPGRGSTFYFTLPA 1444


>gi|322704067|gb|EFY95666.1| putative histidine kinase HHK2p [Metarhizium anisopliae ARSEF 23]
          Length = 2075

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 114/222 (51%), Gaps = 16/222 (7%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1406 LKEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1462

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  + +  + ++V
Sbjct: 1463 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLVEADVPAWV 1522

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGS--------TVILKAARDNGDFI--FSVKNNGSSI 730
              D+ R+ Q+   ++ NA+ F+++G         T    A  +  + +  F++ + G   
Sbjct: 1523 KGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRVYTEEDPAVCNENEIMLQFAITDTGRGF 1582

Query: 731  PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
             ++  + +F  F  +  +   Q  G GLGL I    + LHGG
Sbjct: 1583 TKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGG 1624


>gi|319652162|ref|ZP_08006281.1| hypothetical protein HMPREF1013_02894 [Bacillus sp. 2_A_57_CT2]
 gi|317396151|gb|EFV76870.1| hypothetical protein HMPREF1013_02894 [Bacillus sp. 2_A_57_CT2]
          Length = 727

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 113/213 (53%), Gaps = 2/213 (0%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K++ +K   + +VS++LR+PLT+II +T+LLK+ ++      +S Y+E I   S  L  L
Sbjct: 502 KSERLKTELITNVSHDLRTPLTSIITYTELLKSGEVSE--DDRSAYLEIIDRKSKRLKVL 559

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+ +++ + +G ++L    + L  LL +        ++E+N+  +V           D
Sbjct: 560 IDDLFEVSKMASGNIELRKERVDLIQLLQQALAEHNNAINESNLHFRVTKPVHPAIAFVD 619

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+L ++F  ++ N + +S + S V +  A+  G  + + KN      +D  + +F RF 
Sbjct: 620 GQKLWRVFDNLIGNILKYSLENSRVYIAIAKVKGQAVITFKNVSKYELDDQSEELFERFK 679

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                    G GLGL+I +S I+LH G++ I +
Sbjct: 680 RGDKSRHTDGSGLGLAIAKSIIDLHDGNLEIDT 712


>gi|292487219|ref|YP_003530091.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
 gi|292900406|ref|YP_003539775.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291200254|emb|CBJ47382.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552638|emb|CBA19683.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
          Length = 909

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT+    LNS Q  Y+  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTT----LNSTQRDYLHTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +++ND+LD + ++AG + L      L   L+EV   +A   HE  + + + I      + 
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NNGSSIPEDMCK 736
           + D  R+ QI   +L NA+ F+  G+  I   K A  N      V+  + G  I E    
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 QLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHS 504


>gi|255010784|ref|ZP_05282910.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 790

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 9/238 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NV + VR E  L +  E    A E+K SF+ ++S+E+R+PL  I+GFT++L     G L+
Sbjct: 539 NVQELVRREDELIKAKEIAENA-ELKQSFLANMSHEIRTPLNAIVGFTNILVDETAGELD 597

Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            ++ +  +  ++ +S +LL L++D+LD++ +D+   +       L  +++E+ ++    +
Sbjct: 598 EEEKKDMIGIVNHNSELLLKLISDVLDISRLDSNNQEFVIERYDLAKIVSEIYRTHQVII 657

Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DF 719
           H   +  ++  D     +VA D+ RL+Q+ S  LSNA  F+++GS + L    D G  + 
Sbjct: 658 HP-PVEFRLKMDDSWTVYVAVDKLRLIQVISNFLSNANKFTAEGS-ITLGCEVDPGRAEV 715

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V++ G  I      ++F+RF       Q  G GLGLSI +       G V + S 
Sbjct: 716 GIYVEDTGKGIDTGHLNAIFDRFYKADEFAQ--GTGLGLSICKVIATRLSGRVEVQSQ 771


>gi|229042838|ref|ZP_04190574.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676]
 gi|228726498|gb|EEL77719.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676]
          Length = 883

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|228925530|ref|ZP_04088620.1| hypothetical protein bthur0010_2580 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931775|ref|ZP_04094673.1| hypothetical protein bthur0009_2620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944082|ref|ZP_04106462.1| hypothetical protein bthur0007_2590 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119932|ref|ZP_04249188.1| hypothetical protein bcere0016_2520 [Bacillus cereus 95/8201]
 gi|228663525|gb|EEL19109.1| hypothetical protein bcere0016_2520 [Bacillus cereus 95/8201]
 gi|228815595|gb|EEM61836.1| hypothetical protein bthur0007_2590 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827889|gb|EEM73625.1| hypothetical protein bthur0009_2620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834131|gb|EEM79678.1| hypothetical protein bthur0010_2580 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 314

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI+++V+        +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPESTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I   ++ NA+ +   G T+ ++    +  +   + + G  IP+   ++VF R 
Sbjct: 199 DHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDLQNVFERM 258

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S     TT    IP
Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIP 307


>gi|189465191|ref|ZP_03013976.1| hypothetical protein BACINT_01536 [Bacteroides intestinalis DSM
           17393]
 gi|189437465|gb|EDV06450.1| hypothetical protein BACINT_01536 [Bacteroides intestinalis DSM
           17393]
          Length = 363

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           ++R L +  +A+  +   K+ F+ ++S+E+R+PL  + GF+D+L T  +     KQ    
Sbjct: 123 SKRKLQKAEKAVENSIRNKSLFISNMSHEIRTPLNALSGFSDVLTTPGIDEETRKQCN-- 180

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  +S +LLNLVND++D++ +D   MK N       +L   + Q++   + +    I 
Sbjct: 181 DIIQLNSRLLLNLVNDVVDISCLDVTNMKFNLKQCNAVNLCEGIIQTLEG-IKQTQAEIF 239

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             ++        D  RL Q+   IL NA  F+ +GS ++     + G   FS+ + G  I
Sbjct: 240 FRTELPSLEIETDTLRLHQVLINILVNATKFTKEGSIILQLEQNEEGMAQFSITDTGCGI 299

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           P +   S+F RF     + Q  G GLGL+I +  I+  GG +
Sbjct: 300 PSEKQSSIFERFERVNEKSQ--GTGLGLAICQLIISRLGGRI 339


>gi|165924538|ref|ZP_02220370.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229841162|ref|ZP_04461321.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843267|ref|ZP_04463413.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903349|ref|ZP_04518462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|165923598|gb|EDR40730.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229679119|gb|EEO75222.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|229689614|gb|EEO81675.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697528|gb|EEO87575.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 949

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 444 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 503

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 504 ---QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLP 560

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD    
Sbjct: 561 LVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYL 619

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S 
Sbjct: 620 EFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISE 679

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 680 LGMGSIFAIRIP 691


>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 1721

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 40/280 (14%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             VN+      E++L +  +  R A + K+ F+ ++S+E+R+P+  I+G T LL  ++L  
Sbjct: 1254 LVNIRKRHEIEQSLHQATQRARAATQAKSEFLANMSHEIRTPMNGILGMTSLLLETEL-- 1311

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               +Q ++ E +  +   LL ++NDILD + ++AG ++L      LN LL  +  +++ +
Sbjct: 1312 -TGEQRRFAEIVRNNGDALLEIINDILDFSKIEAGKLELEMVDFSLNKLLEGLAGALSVQ 1370

Query: 662  MHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV------------ 708
             H+  I  I  I  G       D  RL QI + ++ NA+ F+ KG               
Sbjct: 1371 AHKKGIELIYDIEPGTPSHVRGDPGRLRQILANLMGNAIKFTEKGEVFVQIKTGEAVAAD 1430

Query: 709  ------------------ILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
                              +  +  DN       +FSVK+ G  I  +  +++F  F    
Sbjct: 1431 TVAETEAGAPDVKSTEPEVAVSVSDNDAPAVTLLFSVKDTGIGISPEKIETIFESFTQAD 1490

Query: 747  HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
                R   G GLGL+I      + GG + ++S+    +T 
Sbjct: 1491 SSITRNFGGTGLGLTISRKLAGMLGGKLWVTSNPGAGSTF 1530


>gi|294508548|ref|YP_003572607.1| Signal transduction histidine kinase [Salinibacter ruber M8]
 gi|294344877|emb|CBH25655.1| Signal transduction histidine kinase [Salinibacter ruber M8]
          Length = 766

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 158/344 (45%), Gaps = 30/344 (8%)

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L  P + + W   ENR +    +  +A     Y         F A   + D E +++ G 
Sbjct: 421 LGRPFWETPWWDTENRSAVREKVERVAE--GEYVR-------FEAEHVTPDGEARTVTGI 471

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKN 570
           +  ++    E   I        +T  ++T+  R  R L E  E          +A  +K+
Sbjct: 472 MRPVTGEEGEVVSI-------FVTARDITERKRKARRLKEAKEQAELSKLEAEEASRMKS 524

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           + + ++S+E+R+PLT IIGF + +     G  +   + + + I  S   LL+ ++ +L+L
Sbjct: 525 AMLANMSHEIRTPLTGIIGFAEAIGDEIDG--DGGVAHFADLIEDSGRRLLDTLDAVLNL 582

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + ++AG M L    I L D   +V +  A +  ++ + ++V  + +     AD   L  +
Sbjct: 583 SKLEAGQMTLESRPIDLADQAQQVAREFAAEADDSGLALEV--EAEEAGARADEGGLQIV 640

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +LSNA+ ++ +G TV ++  R++G+ +  +++ G  +   + +S+F  F   +    
Sbjct: 641 LQNLLSNAIKYTEEG-TVQVRTYREDGEAVLQIEDTGIGMDPAVAESLFEPFRQGSEGLS 699

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           R   G G+GL++ +      GG + + +     +T   R+P+ +
Sbjct: 700 REYEGTGIGLAVTKKATEQMGGSIDVETEKGEGSTFTARLPAAD 743


>gi|257066389|ref|YP_003152645.1| histidine kinase [Anaerococcus prevotii DSM 20548]
 gi|256798269|gb|ACV28924.1| histidine kinase [Anaerococcus prevotii DSM 20548]
          Length = 491

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +++KN F+  VS+ELR+PLT+I G+   L+  ++        Q ++ I      L  +V 
Sbjct: 262 EDMKNDFISSVSHELRTPLTSIKGWAITLQAPEMQKNEDMMGQGLKIIEDEGDRLSMMVE 321

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD + + +   K +   + + +L  ++   +  +    NI    ++  K     AD+ 
Sbjct: 322 DLLDFSRLSSSSFKYDKEKLDIVELSKQIHTQLFPRTQSQNIEFNFVTIYKEIPVFADKN 381

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ ++   I+ NA+ F+S+   + L   +++G+ + +VK+NG  I ED    V ++F   
Sbjct: 382 RMKEVLINIIDNAIKFTSESGQIDLIIDQEDGNVLITVKDNGEGIKEDEIAFVASKFYKG 441

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +    +   GLGLSI E  +  HGG + I S     T++  +IP  E
Sbjct: 442 S--SSKSQTGLGLSICEEIVKAHGGKLVIKSQYGVGTSVTVQIPRYE 486


>gi|85716111|ref|ZP_01047087.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697110|gb|EAQ34992.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 978

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 167/363 (46%), Gaps = 32/363 (8%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-- 497
           +D  +EG+ +F   GRI   N +  +L+    + L+   H  N+      +  ES G   
Sbjct: 617 VDIAAEGILMFDDGGRITACNRSAETLFGHSGDNLT--QH--NL---VDLFAPESQGAVR 669

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-----------PNAQTMLTFVNVT 546
           D   +++   DD+   L    E+L     E  +IPL           PN      F +++
Sbjct: 670 DYLKSLM--HDDDASLLDHGREVLG-RAREDGLIPLSMIMGRTQAEGPN--FFAVFRDLS 724

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            S +AE  L++      +A   K   +  +S+E+R+PL +IIGF +++   K GSL +++
Sbjct: 725 QSKKAETELSQARRQAERAANAKADVLARISHEIRAPLNSIIGFAEVMIDEKFGSLGNER 784

Query: 607 SQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             YVEY   I AS   ++  ++D+LDL+ ++ G + L +    LN+++ +    +  + +
Sbjct: 785 --YVEYMKDIRASGERIIAFIDDLLDLSRIETGKLDLAFVNQNLNEIVEQCVAVMQPQAN 842

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFS 722
              I I+      L   VAD Q L QI   ++ N++  ++ G  VI+  A  D GD    
Sbjct: 843 RERIIIRTSLAHTLPPVVADAQALRQITLNLIGNSIHLANAGGQVIVSTAITDFGDVALR 902

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V++ G  + E+   +    F + A   Q  +  G+ LS+ ++ +  +     I +     
Sbjct: 903 VRDTGQGLSENELAAATEPFRTPAPSDQASKSAGVSLSLTKALVEANRAQFHIKTGPHSG 962

Query: 782 TTI 784
           T I
Sbjct: 963 TLI 965


>gi|325962315|ref|YP_004240221.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468402|gb|ADX72087.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 551

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 127/257 (49%), Gaps = 25/257 (9%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A +++ F +VTD V A  A              K+ FV  VS+E R+PLT+I+G+ ++L 
Sbjct: 316 AGSVIAFSDVTDLVNALAA--------------KDDFVSSVSHEFRTPLTSILGYVEILL 361

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +    +  Q   +E I  +S  LL LV+D+L       G + +   T+ + +L+    
Sbjct: 362 ADEP---DESQRDMLEIIRRNSERLLTLVSDLL---ASRNGQLIVTPQTVDVAELVRSSV 415

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S   +     + +K  +  +L + V D  R+ Q+   ++SNA+ +S  G  V++  A++
Sbjct: 416 SSAQPRAAAAGLVLKADTPDRLEAHV-DGARISQVLDNLVSNAIKYSPGGGRVLVTLAQE 474

Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +G     V + G  + PED    VF +F   S   R    GVGLGL I ++ I+ HGG +
Sbjct: 475 DGHLECRVTDTGMGMSPED-ASEVFAKFFRASTVRRTAIPGVGLGLPISKAIIDAHGGTI 533

Query: 773 SISSSDEGVTTINCRIP 789
           ++ S+    TT   R+P
Sbjct: 534 AVHSTLGEGTTFTFRVP 550


>gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1238

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D    +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|281178110|dbj|BAI54440.1| two-component sensor kinase [Escherichia coli SE15]
          Length = 900

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA++ K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KANQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    IR+   I+D    + 
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATEIADDVPTAL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGERWLVEVEDSGCGIDPAKLAEIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I         G +S +S+ E  +    R+P
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSRLAQAMSGELSATSTPEVGSCFCLRLP 651


>gi|255029104|ref|ZP_05301055.1| two-component sensor histidine kinase [Listeria monocytogenes LO28]
          Length = 581

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 120/237 (50%), Gaps = 10/237 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 340 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 396

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E NI++ +I +  + S
Sbjct: 397 LHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQV-IIPEKTIPS 455

Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      
Sbjct: 456 VTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDR 515

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           VF RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K+
Sbjct: 516 VFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKKD 572


>gi|218709123|ref|YP_002416744.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218322142|emb|CAV18256.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 818

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 127/231 (54%), Gaps = 13/231 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     L+++Q ++++ +  S   ++ L+N+I
Sbjct: 343 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LSTEQEKHLKSLYDSGDHMMTLLNEI 398

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G + L+ +   L+ ++  +     T   E  ++ KV S+   G  + +D+ R
Sbjct: 399 LDFSKIEQGRLDLDETRFPLDSIIGSINSVYYTLSSEKGLQFKVYSEVPSGRWYFSDKAR 458

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFV 743
           L QI   +L+NA+ F+S+G   V LK   + GD   S  V++ G  I ++  K +F  F 
Sbjct: 459 LRQILFNLLNNAVKFTSRGFVEVYLKEIVERGDTYLSIRVRDTGIGISKEAQKRIFKPFE 518

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPSK 791
                  RR  G GLGL+IV+    L  G +S+ +S+EG+ T+ + R+  K
Sbjct: 519 QAESSTTRRFGGTGLGLAIVKKIAQLMEGSISV-TSEEGIGTSFDVRLKIK 568


>gi|229523745|ref|ZP_04413150.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae bv. albensis VL426]
 gi|229337326|gb|EEO02343.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae bv. albensis VL426]
          Length = 868

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 306 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 365

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 366 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 421

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 422 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 480

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +    S+F  FV       RR  G GLG+SIV + I 
Sbjct: 481 VFKIDVAPEMLTIVVEDTGCGMTQTQIDSLFVPFVQADSTITRRFGGTGLGMSIVANLIE 540

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 541 LMNGKIEVKSEFEQGTQIKVSLP 563


>gi|229009769|ref|ZP_04166990.1| hypothetical protein bmyco0001_2400 [Bacillus mycoides DSM 2048]
 gi|228751505|gb|EEM01310.1| hypothetical protein bmyco0001_2400 [Bacillus mycoides DSM 2048]
          Length = 281

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           RK+ E +   + ++S+++R+PLT+IIG+ D LK     S   KQ +Y+E +   S  L +
Sbjct: 47  RKSQEARKQLLSNISHDIRTPLTSIIGYIDALKDDVAASEVEKQ-EYLEILYKKSNDLKH 105

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++V+        +A
Sbjct: 106 LVDEIFNMAKLDADEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPESTSPIIA 165

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I   ++ NA+     G  V ++    N ++   + + G  IP+   ++VF R 
Sbjct: 166 DHLSLIRIIGNLIKNAIHHGKAGKIVGVELLETNTEYELLIWDKGPGIPKHDLQNVFKRM 225

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GG + + S     TT    +P
Sbjct: 226 YRSEQSRNPSYGGSGLGLSISKALVEKNGGSIWVDSIPWERTTFGFSVP 274


>gi|196035114|ref|ZP_03102520.1| sensor histidine kinase/response regulator [Bacillus cereus W]
 gi|195992178|gb|EDX56140.1| sensor histidine kinase/response regulator [Bacillus cereus W]
          Length = 896

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQSHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane
           protein; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1065

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 148/313 (47%), Gaps = 23/313 (7%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVT 546
           + Y+ +  G+     I T       ++   ++LL+ + + YS+  +P    +   V ++T
Sbjct: 350 AAYHRKESGFLFLVGISTV------AIAAFVDLLNANQIFYSVEAIPIGIFVFILVQSLT 403

Query: 547 DSVRAERALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            S R  RA +E    ++ L   D++K+ F+ + S+EL++PL  IIG  + +     G LN
Sbjct: 404 LSRRFSRAFSEVETLSKRLLALDKLKDEFLANTSHELKTPLNGIIGIAESMFDGIGGKLN 463

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q Q +  I +S   L +LV+DILD + +    + L+   I L+ + + V         
Sbjct: 464 QEQRQNLGMIVSSGKRLSSLVDDILDFSKMKNRDLDLDLKAIDLHQICDFVLVISRPLYV 523

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGD 718
             N+ ++          + D  RL QI   I+ NA+ F+ KG     + +I K A     
Sbjct: 524 TKNLTVRNNVPIDFPPILGDEARLQQILFNIIGNAIKFTEKGRIDVSAEIIEKMA----- 578

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + S+++ G  IP+D    +F  F        R+  G GLGL+I +  + LHGG++ + S
Sbjct: 579 -VISIRDTGIGIPKDKFGDIFRSFEQVDASTTRKFGGTGLGLAISKRLVELHGGNIWVES 637

Query: 777 SDEGVTTINCRIP 789
           +    +  +  +P
Sbjct: 638 TPAEGSMFSFSLP 650


>gi|119351159|gb|ABL63474.1| ethylene receptor isoform 1 [Coffea canephora]
 gi|119351161|gb|ABL63475.1| ethylene receptor isoform 2 [Coffea canephora]
 gi|119351163|gb|ABL63476.1| ethylene receptor isoform 3 [Coffea canephora]
          Length = 740

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 133/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L ++N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 314 ESMRARDLLMDQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+     L+ L  EV   I 
Sbjct: 374 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIEPFDLHGLFKEVINLIK 430

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  + + D +RL+QI   ++ NA+ FS +G   I         
Sbjct: 431 PIASVKKLFVTLSMSSDLPEYAIGDEKRLMQIMLNVVGNAVKFSREGGISISASVAKSDS 490

Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+  R         DN  ++   VK+ GS I P+D+ K +F +F  +     +   G GL
Sbjct: 491 LRDPRAPDFFPVLSDNHFYLRVQVKDTGSGISPQDIPK-LFTKFAQSQSLAAKNSGGSGL 549

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ + S   G
Sbjct: 550 GLAICKRFVNLMDGHIWLESEGLG 573


>gi|75907015|ref|YP_321311.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700740|gb|ABA20416.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 476

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEY 612
           L   +E L   D+ + +F+ +VS+ELR+P++N+    D LK    G+    Q   ++ + 
Sbjct: 239 LNRMSERLASLDQERRTFLANVSHELRTPISNVQVTVDALKG---GAYEEPQLRDRFFQT 295

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I   +  L  L++D+LDL  ++AG+ +L    + L+ L+N    ++  +M    + ++V 
Sbjct: 296 IENETKRLSRLIHDLLDLGRLEAGVSQLEQQNLSLSGLINRAVNAMEPRMQAAGVSLQVK 355

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +SD  +     D +RLLQ    +L NA+  S   S V++    D    +  +++ G  I 
Sbjct: 356 VSDLLIQ---GDPERLLQAILNLLDNAIKHSQPDSQVLISGYSDGKQAVIKIQDQGKGIR 412

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT-TINCRIP 789
           E     +F +F +       +  GLGL+I +  I  H G ++  S++ +G T TI   +P
Sbjct: 413 EQDLPRIFEQFYTTDPSRTGKSSGLGLAITKRIIEAHQGRITANSTAHQGATFTIYLPLP 472

Query: 790 SK 791
           +K
Sbjct: 473 AK 474


>gi|313148589|ref|ZP_07810782.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137356|gb|EFR54716.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 768

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 9/238 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NV + VR E  L +  E    A E+K SF+ ++S+E+R+PL  I+GFT++L     G L+
Sbjct: 517 NVQELVRREDELIKAKEIAENA-ELKQSFLANMSHEIRTPLNAIVGFTNILVDETAGELD 575

Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            ++ +  +  ++ +S +LL L++D+LD++ +D+   +       L  +++E+ ++    +
Sbjct: 576 EEEKKDMIGIVNHNSELLLKLISDVLDISRLDSNNQEFVIERYDLAKIVSEIYRTHQVII 635

Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DF 719
           H   +  ++  D     +VA D+ RL+Q+ S  LSNA  F+++GS + L    D G  + 
Sbjct: 636 HP-PVEFRLKMDDSWTVYVAVDKLRLIQVISNFLSNANKFTAEGS-ITLGCEVDPGRAEV 693

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V++ G  I      ++F+RF       Q  G GLGLSI +       G V + S 
Sbjct: 694 GIYVEDTGKGIDTGHLNAIFDRFYKADEFAQ--GTGLGLSICKVIATRLSGRVEVQSQ 749


>gi|294625969|ref|ZP_06704580.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292599707|gb|EFF43833.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 767

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 113/238 (47%), Gaps = 10/238 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+ KQ  Y E I  + 
Sbjct: 391 KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDIKQRSYTESIRRAG 447

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G L
Sbjct: 448 AHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGLL 506

Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
           G   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  + 
Sbjct: 507 GDITASGDCTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINVEQ 566

Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F RF   +  R   R  G GLGL+I +      GG + + S     T     +P
Sbjct: 567 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVELP 624


>gi|269796832|ref|YP_003316287.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269099017|gb|ACZ23453.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 572

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 8/234 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS---LNSKQSQYVEYISASST 618
           L  A ++K+ FV  VS+ELR+PLT+IIG+ +L++     S   L  +    +E ++ +++
Sbjct: 331 LVAAMQVKDDFVSTVSHELRTPLTSIIGYLELIEEGYEDSEFELTDEVHGQLEVVARNAS 390

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL LV+D+L  A   +G + L  S   L+++  +    +  +     ++++V  D +  
Sbjct: 391 RLLALVSDLLTTAQHASGTLSLRMSAGRLDEITQQSLDGVIERALGRGVQLRV--DVRPT 448

Query: 679 SF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              + D+ R+ Q+   + SNA+ ++  G TV +     +      V++ G  + E   +S
Sbjct: 449 PVQMLDQARIAQVLDNLFSNALKYTPSGGTVEVDVTAHSDHTSLRVRDTGIGMSESDVRS 508

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F +F    +A R    GVGLGL I ++ +  HGG + + S+    +T   R+P
Sbjct: 509 LFAKFFRAESARRAAIPGVGLGLVICKAIVEGHGGSIVVDSTLGSGSTFEVRLP 562


>gi|218440686|ref|YP_002379015.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218173414|gb|ACK72147.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 466

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 10/234 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEY 612
           L   +E L   +  + +F+ +VS+ELR+P++N+      L+   +G+ +  +   ++++ 
Sbjct: 234 LNRMSELLASVERERRAFLANVSHELRTPVSNV---KVTLEALSIGAASEPELCDRFIQT 290

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
                  L  L+ D+LDL  ++AG+  L   ++ L  L+N   ++I  +   + + I   
Sbjct: 291 AQNEINRLSRLIQDLLDLGRLEAGVAPLEIQSVSLRSLINRAIEAIELRTFHHGVNINND 350

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + D +L     D +R+LQ    IL NA+ +S  GSTV L    +N   I  +K+ G  I 
Sbjct: 351 VPDLELN---VDSERMLQALLNILENAIKYSPPGSTVSLMGYTENNQKIIQIKDEGIGIK 407

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
            +    +F  F  +    Q  G GLGL+I +  I  HGG ++  S   EG T I
Sbjct: 408 PEALPHIFEEFYRSDSSRQSDGTGLGLAISQRIIKAHGGTITADSVLGEGTTII 461


>gi|189423458|ref|YP_001950635.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419717|gb|ACD94115.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1068

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 14/234 (5%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +E K+ F+  +S+E+R+P+  I+G  +LLK S+   L   Q + + Y S S+  LL ++N
Sbjct: 557 NEAKSRFLAVMSHEIRTPMNGIMGINNLLKQSQ---LTPDQRELLGYASDSADALLLIIN 613

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DILD + ++A  ++L  S   L  L+  +         +  +R+    D +L   V  D+
Sbjct: 614 DILDFSKIEANKLELCPSVFRLGRLMESLCNMYQLVADKKGLRLVCDYDRELPELVTGDQ 673

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG--DFIFSVKNNGSSIPEDMCKSV 738
            RL Q+ + +L+NA+ F+ +G   +    L ++  +G     F V ++G  I  +  + +
Sbjct: 674 DRLRQVLTNLLNNAIKFTRQGEVRLWVHRLSSSSADGMLRIAFQVTDSGIGIAPEKQERI 733

Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ F S A     R   G GLGL+I +S + L GG + ++S+    +T    +P
Sbjct: 734 FDMF-SQADSSTTREFGGTGLGLAICKSLVGLMGGTIQVTSTPGVGSTFRVELP 786


>gi|37677080|ref|NP_937476.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37201625|dbj|BAC97446.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 720

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 16/250 (6%)

Query: 540 LTFVNVTDSVRAERALTEKN----EALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592
           L F    D VR  R   +++    EA R A+   E K+ F+ ++S+E+R+PL  IIG +D
Sbjct: 203 LVFKLYIDQVRLTRFTQQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIGLSD 262

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
              T    + + +  +Y++ I  S   LL L+NDILD++ +D+G + L      L D+++
Sbjct: 263 ---TDHYLNASEQIREYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVD 319

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           + +     +     +   +I+       F  D  RL QI S + SNA+ F+ +G   +  
Sbjct: 320 DTRVLFHERTQTPGVESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHEGQIKVAF 379

Query: 712 AARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
             ++ G        V + G  I E   + VF+ FV       R+  G GLGL+I +   N
Sbjct: 380 TVQNRGPNSVLQICVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTN 439

Query: 767 LHGGHVSISS 776
           L  G + I S
Sbjct: 440 LMQGTLRIES 449


>gi|187923860|ref|YP_001895502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187715054|gb|ACD16278.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER L  +  A + A+E    K+ F+  +S+ELR+PLT ++    +L+   +  L  +   
Sbjct: 271 ERLLASEQAARQTAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEM--IPGLPDQARA 328

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  +  +   L++D+LDL  V  G ++L+  T+ ++D+++ V +   +++      
Sbjct: 329 SVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHDVIDSVLELFRSEIQVKQQD 388

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V  D +    +ADR RL Q+   ++ NA  F+  G  + ++   +      SV++ G 
Sbjct: 389 VHVHKDAQHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTRDERMHVQISVEDTGI 448

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I  D    +FN F        R+  G+GLGL+I ++  ++HGG V+  S
Sbjct: 449 GIEPDQIGKLFNAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTVTAQS 498


>gi|22126848|ref|NP_670271.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis KIM 10]
 gi|108806928|ref|YP_650844.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Antiqua]
 gi|108812920|ref|YP_648687.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|149366792|ref|ZP_01888826.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|218928376|ref|YP_002346251.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis CO92]
 gi|270487159|ref|ZP_06204233.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|21959879|gb|AAM86522.1|AE013898_5 sensor for ctr capsule biosynthesis [Yersinia pestis KIM 10]
 gi|108776568|gb|ABG19087.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Nepal516]
 gi|108778841|gb|ABG12899.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Antiqua]
 gi|115346987|emb|CAL19878.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CO92]
 gi|149291166|gb|EDM41241.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|270335663|gb|EFA46440.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
          Length = 957

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 452 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 511

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 512 ---QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLP 568

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD    
Sbjct: 569 LVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYL 627

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S 
Sbjct: 628 EFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISE 687

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 688 LGMGSIFAIRIP 699


>gi|312171320|emb|CBX79579.1| K07678 two-component system, NarL family, sensor histidine kinase
           BarA [Erwinia amylovora ATCC BAA-2158]
          Length = 924

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT+    LNS Q  Y+  I  S+  LL
Sbjct: 302 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTT----LNSTQRDYLHTIERSANNLL 357

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +++ND+LD + ++AG + L      L   L+EV   +A   HE  + + + I      + 
Sbjct: 358 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 417

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NNGSSIPEDMCK 736
           + D  R+ QI   +L NA+ F+  G+  I   K A  N      V+  + G  I E    
Sbjct: 418 IGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQS 477

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 478 QLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHS 519


>gi|260768861|ref|ZP_05877795.1| sensor histidine kinase [Vibrio furnissii CIP 102972]
 gi|260616891|gb|EEX42076.1| sensor histidine kinase [Vibrio furnissii CIP 102972]
          Length = 796

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 140/278 (50%), Gaps = 21/278 (7%)

Query: 523 DSVLEYSIIPLP-NAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           D  +E  II +P ++Q  +     TF   T  + AE+    K +A  KA   K++F+  +
Sbjct: 296 DESMEGGIIDVPYHSQDEIRYLIDTFNQKTVYLEAEKV---KAQASTKA---KSAFLATL 349

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  ++G   +L  S    L  +Q Q ++ +  S   ++ L+N+ILD + ++ G
Sbjct: 350 SHEIRTPMNGVLGTAQILLKS---DLKPRQRQQMKSLYESGEHMMTLLNEILDFSKIEQG 406

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            ++L+ S+  L+ ++  V    +T  +E  ++ KV S  +    + +D+ RL QI   +L
Sbjct: 407 HLELDRSSFPLDSIIGSVTSVYSTLCNEKGLQFKVYSQIEENRWYYSDKARLRQILFNLL 466

Query: 696 SNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           +NA+ F+ +G   ++      G+    I  V++ G  IP+D    +F  F        RR
Sbjct: 467 NNAVKFTYRGLVEVILEEETVGEQLYLIIQVRDTGIGIPKDAQNKIFKPFEQAESSTTRR 526

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+IV+    L  G V++ S     T+   R+
Sbjct: 527 FGGTGLGLAIVKQITELMRGSVNVVSEVGIGTSFTIRV 564


>gi|229143715|ref|ZP_04272137.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24]
 gi|228639771|gb|EEK96179.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24]
          Length = 883

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|30019163|ref|NP_830794.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29894706|gb|AAP07995.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 896

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|15600175|ref|NP_253669.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9951266|gb|AAG08367.1|AE004911_2 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 998

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 18/223 (8%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD  K+ F+  +S+E+R+PL  I+G  +LL+ + LG    +  Q +  ++ +   LL ++
Sbjct: 503 ADRAKSRFLATMSHEIRTPLNGILGMAELLREASLG---ERDRQRLRALATAGEGLLAIL 559

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGS 679
           N++L  A ++            L  LL +V   +  +  EN  R+ +     + DG  G+
Sbjct: 560 NEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGA 619

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGD--FIFSVKNNGSSIPEDMC 735
                Q L Q+ + +L NA+ F+  G   +   + AR  G      SV ++G  IPE+M 
Sbjct: 620 ----EQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARSAGSERLRLSVADDGIGIPEEMR 675

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F RF        RR  G GLGL+I +  +   GG + + S
Sbjct: 676 ERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVES 718


>gi|315180554|gb|ADT87468.1| sensor histidine kinase [Vibrio furnissii NCTC 11218]
          Length = 796

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 140/278 (50%), Gaps = 21/278 (7%)

Query: 523 DSVLEYSIIPLP-NAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           D  +E  II +P ++Q  +     TF   T  + AE+    K +A  KA   K++F+  +
Sbjct: 296 DESMEGGIIDVPYHSQDEIRYLIDTFNQKTVYLEAEKV---KAQASTKA---KSAFLATL 349

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  ++G   +L  S    L  +Q Q ++ +  S   ++ L+N+ILD + ++ G
Sbjct: 350 SHEIRTPMNGVLGTAQILLKS---DLKPRQRQQMKSLYESGEHMMTLLNEILDFSKIEQG 406

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            ++L+ S+  L+ ++  V    +T  +E  ++ KV S  +    + +D+ RL QI   +L
Sbjct: 407 HLELDRSSFPLDSIIGSVTSVYSTLCNEKGLQFKVYSQIEENRWYYSDKARLRQILFNLL 466

Query: 696 SNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           +NA+ F+ +G   ++      G+    I  V++ G  IP+D    +F  F        RR
Sbjct: 467 NNAVKFTYRGLVEVILEEETVGEQLYLIIQVRDTGIGIPKDAQNKIFKPFEQAESSTTRR 526

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+IV+    L  G V++ S     T+   R+
Sbjct: 527 FGGTGLGLAIVKQITELMRGSVNVVSEVGIGTSFTIRV 564


>gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1238

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D    +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
 gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
          Length = 1129

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ AD++K+ F+   S+ELR+PL  +IG  + L +   G L S Q   ++ I 
Sbjct: 446 IQKQNDELQLADKLKDEFLATTSHELRTPLHGMIGIAETLISGANGPLPSNQRYQLDIII 505

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L  LV+D+LD   +  G + +  S + L      V +     +    +RI     
Sbjct: 506 KSGQRLATLVDDLLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVS 565

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +    AD QRL Q+   ++ NA+ ++++G  VI     D+   +  V + G  IP + 
Sbjct: 566 NDVAPVSADPQRLEQVLYNLIGNAIKYTTEGKIVISANVVDDKVRV-QVVDTGQGIPAEQ 624

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 625 LEHIFEPLIQAGRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681


>gi|322708265|gb|EFY99842.1| putative histidine kinase HHK1p [Metarhizium anisopliae ARSEF 23]
          Length = 2550

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 15/224 (6%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ +VS+ELR+PL  +IG ++LL+ S    LN +Q +  + I  S+ +LL ++NDILD +
Sbjct: 1969 FLANVSHELRTPLNGVIGNSELLRDS---DLNREQLEMADSIRVSADLLLTVINDILDFS 2025

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRL 687
             ++A  MKL        +++ EV ++++    E   +  +K+I D  L   +   D  RL
Sbjct: 2026 KMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLPPMLIYGDPIRL 2085

Query: 688  LQIFSKILSNAMDFSSKGSTVI---LKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             Q+   ++ N++ F+  GS  I   L A  +D+    F V++ G  IP      +F  F 
Sbjct: 2086 HQVLGNLIGNSLKFTEDGSVTIGARLDAETKDSATLTFWVRDTGIGIPAQQLAKLFQPFS 2145

Query: 744  SNAHRGQRR--GVGLGLSIVESFIN-LHGGHVSISSSD-EGVTT 783
                   R+  G GLGLSI +S I  +  G + + S + EG T 
Sbjct: 2146 QADASTARKYGGSGLGLSICKSLIEIMMKGKIQLESEESEGTTA 2189


>gi|269102304|ref|ZP_06155001.1| sensory box sensor histidine kinase/response regulator VieS
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162202|gb|EEZ40698.1| sensory box sensor histidine kinase/response regulator VieS
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1249

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 22/258 (8%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M    +V+D ++A+       E   +A + +  F+  +S+ELR+P+ ++IG  D+L+T  
Sbjct: 662 MTVLTDVSDLIQAQ-------EKAERAMQARTHFLATMSHELRTPIASMIGLIDILETK- 713

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             + + +Q  Y++ + +S+  LL LVNDILD + ++AG +KL+Y        L E+  S+
Sbjct: 714 --NPSQEQLNYIKNLKSSTNHLLYLVNDILDFSQIEAGQLKLDYQPC---RWLTEIGLSL 768

Query: 659 ---ATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              A +     ++  +     KL +   D  R+ Q+ + +LSNA+ F+  GS  +     
Sbjct: 769 INFAQEAQHKGVKFNLFWQPTKLTTLTIDSIRVNQVINNLLSNAIKFTEAGSISVYIELT 828

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
            +   +  V + G  I ED  K +F+ F   A +   R   G GLGLSI +  + +  G 
Sbjct: 829 QHS-LLVKVIDTGIGIHEDNIKRLFSPF-EQAEKTISRTYGGTGLGLSICKQLVEMMNGK 886

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     TT+  ++P
Sbjct: 887 IELHSQLNEGTTVIFKVP 904


>gi|210623053|ref|ZP_03293540.1| hypothetical protein CLOHIR_01490 [Clostridium hiranonis DSM 13275]
 gi|210153856|gb|EEA84862.1| hypothetical protein CLOHIR_01490 [Clostridium hiranonis DSM 13275]
          Length = 918

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK++   +++ ++++ ++ +S++LR+PL  I G    +  +K         + +  I   
Sbjct: 679 EKDKLEMESERLRSNLLRAISHDLRTPLAGISGAVSTIIKNKNEISEEITDELLNGIYED 738

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L+ LV ++L +  +D G +K+     ++ ++L+E    I  ++++ ++ I +    +
Sbjct: 739 SQWLIRLVENLLSMTKIDEGKLKVGKEPELVEEVLSESLSHIKRRLNDADVEIDI--PDE 796

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L     D + + Q+F  ++ N++ +++    + ++  RD+ +  F   +NG  I +D+  
Sbjct: 797 LIFVPMDVKLIEQVFVNLVDNSLKYATSSCKINIRVYRDDDNAWFEFSDNGPGISDDLAS 856

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDE 779
            +F+RF +   + +  R+GVGLGLSI +S +N HGG + + +S E
Sbjct: 857 HIFDRFYTGERKSKDSRKGVGLGLSICKSIVNAHGGEIKVRNSQE 901


>gi|193212325|ref|YP_001998278.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
 gi|193085802|gb|ACF11078.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
          Length = 596

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 157/369 (42%), Gaps = 51/369 (13%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRLSPGTHIR---------NIAAT 486
           E +  + E + V    G I L+NPA   L+  E    R  P  HI           + A 
Sbjct: 252 EVLSSIRESIIVTNASGEIVLANPAASRLFMIEGARKRSIPVDHIELPEMRELFVRVHAR 311

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            S  YNE        +++T+                + V + + +P+   +     V V 
Sbjct: 312 QSGIYNEE------LSVMTA--------------RGERVFKVTAVPVVKGEQFDGTVLVI 351

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +            LR  +  +  FV  VS+ELR+PL +I G+T+ L     G++N  +
Sbjct: 352 NDI----------TRLRNLERTRRDFVSSVSHELRTPLASIKGYTETLLE---GAVNDPE 398

Query: 607 --SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             + ++  I   S  L  L+ND+LDL+ +++G +  N+  + +   L +           
Sbjct: 399 HATAFLRIIQQESEQLTALINDVLDLSRIESGKIIYNFEPVDVKPALEKTMALFEPAASR 458

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFS 722
             +RI++ + DG L   +ADR     +   ++ NA+ +  +    V + A + + +    
Sbjct: 459 KGVRIELNVPDG-LPPVLADRNYFDIVMRNLIDNAVKYVDANRGRVRVSACKADQNVAIE 517

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V +NG  IP+   K +F RF  V  A   +  G GLGLSIV+  +  H G+V + S    
Sbjct: 518 VSDNGIGIPQADLKRIFERFYRVDKARSRELAGTGLGLSIVKHILLAHKGNVEVRSKTNS 577

Query: 781 VTTINCRIP 789
            +T     P
Sbjct: 578 GSTFTVTFP 586


>gi|186894665|ref|YP_001871777.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis PB1/+]
 gi|186697691|gb|ACC88320.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 957

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 452 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 511

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 512 ---QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLP 568

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD    
Sbjct: 569 LVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYL 627

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S 
Sbjct: 628 EFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISE 687

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 688 LGMGSIFAIRIP 699


>gi|119025683|ref|YP_909528.1| sensor protein [Bifidobacterium adolescentis ATCC 15703]
 gi|118765267|dbj|BAF39446.1| sensor protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 358

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 13/234 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +  E  E L+ AD+++   V +VS+ELR+P++ +    + +    +    S     +E I
Sbjct: 117 SFNEMAEELQHADQMRRDMVANVSHELRTPVSALQAMVENMADGVVEPTPSN----LESI 172

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV 671
              +  L +L+  +LDL+ ++AG   L        D ++E  +   IA   H +NI I V
Sbjct: 173 LNQTHRLSDLIAFLLDLSRMEAGAASLQIDKFNFADFIDETVEPLEIADAGHAHNIEIHV 232

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
             D ++     D+ RL Q+F+ I++NA+  S+  + V+++A   +D G  + +V N GS 
Sbjct: 233 PDDIEME---GDQDRLRQLFTNIIANALKHSADNTAVLIEAHENKDFGTIVTNVVNFGSQ 289

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           IP++    +F RFV        +  G GLGLSI      LHGG V +     G 
Sbjct: 290 IPQEARSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVRVVDDPRGA 343


>gi|118590844|ref|ZP_01548244.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
 gi|118436366|gb|EAV43007.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
          Length = 774

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 11/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA     +  EA    ++ K++F+  + +E+R+PL  I+G  +LL       L +++S Y
Sbjct: 235 RAAAEFEKAYEAAEAGNKAKSAFLATIGHEIRTPLNGILGMAELLAQK---PLPAEESGY 291

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I+ S   LL ++N+ILD A ++ G  +       L+DL+ +    +  ++ E N  +
Sbjct: 292 VRTITRSGRALLEMINEILDYAKIEYGSQQSEEIIFRLDDLVRDTAAVVEGQVLEQNNDL 351

Query: 670 KVISDGKL-GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SV 723
           K+  D  L G+F+ +D  RL +I   +LSNA+ F+  GS  +   A +  D       SV
Sbjct: 352 KLHIDPALDGAFIKSDPTRLKRILLNLLSNAVKFTENGSVWLEVTAGNVTDETLELNVSV 411

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  I  D  K +F  F        RR  G GLGL+I +  +    G + +SS+    
Sbjct: 412 RDSGIGIASDAQKQLFTAFHQVDSSISRRFGGTGLGLAICKQIVEAMQGTIGVSSTPGEG 471

Query: 782 TTINCRIP 789
            T +  +P
Sbjct: 472 ATFSFTVP 479


>gi|114565936|ref|YP_753090.1| sensory box histidine kinase/response regulator [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114336871|gb|ABI67719.1| Hpt sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 497

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 125/245 (51%), Gaps = 12/245 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE ++ + N     AD  K+ F+ ++S+E+R+P+  I+G  DLL  S    L+ +Q+  +
Sbjct: 8   AESSIVQGNG--NPADMAKSQFLANMSHEIRTPIIGILGSLDLLDQS---DLSQQQATNI 62

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I      LL +V++ILD++ +++  +  N     L +L+      + T +    +  K
Sbjct: 63  SIIRECGEQLLQIVDNILDVSKIESDPVTPNLEPCNLGELIIATVNRVDTLLKRKGLDFK 122

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNN 726
           +  D ++ +  + D+ +L Q+   +L N++ F+ +G  V LKA    GD    +F++ + 
Sbjct: 123 LNIDSRIPAKIMLDKTKLQQVLLNLLYNSIKFTPQGR-VELKAKIQPGDSYRLLFTISDT 181

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP    + VF  F    N++  Q  G GLGL I +  + L  G +S+SS     TT+
Sbjct: 182 GIGIPSSFVERVFEPFTQADNSNSRQYGGAGLGLYICKKLLELMEGEISLSSMPGVGTTV 241

Query: 785 NCRIP 789
           +  IP
Sbjct: 242 SFSIP 246


>gi|320015940|gb|ADV99511.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 949

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 444 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 503

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 504 ---QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLP 560

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD    
Sbjct: 561 LVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYL 619

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S 
Sbjct: 620 EFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISE 679

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 680 LGMGSIFAIRIP 691


>gi|296186460|ref|ZP_06854863.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296048907|gb|EFG88338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 554

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 10/240 (4%)

Query: 547 DSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGS 601
           +++++     EK   L KA   ++++  F  ++S+ELR+PL  I     +L     ++G 
Sbjct: 267 EAIQSNIKYEEKKRLLNKAVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGL 326

Query: 602 LNSKQ---SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            N  Q    +Y+  I  +S  LL L+N+++D+  +DAG  ++  S   +  +  ++  S+
Sbjct: 327 DNDNQFKTDKYLHTIKQNSYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSV 386

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +   NIR+   ++ +      D  ++ +I   +LSNA+ F+ K  T+ +        
Sbjct: 387 VEYVENKNIRLIFDTEVEEKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNIYDSTDK 446

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I S+K+ G  I + M K +F++FV       RR  G G+GLS+V+S + +H G +S+ S
Sbjct: 447 VIISIKDTGIGIDKSMQKLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVS 506


>gi|206576134|ref|YP_002239668.1| sensor protein KdpD [Klebsiella pneumoniae 342]
 gi|288936510|ref|YP_003440569.1| osmosensitive K channel His kinase sensor [Klebsiella variicola
           At-22]
 gi|206565192|gb|ACI06968.1| sensor protein KdpD [Klebsiella pneumoniae 342]
 gi|288891219|gb|ADC59537.1| Osmosensitive K channel His kinase sensor [Klebsiella variicola
           At-22]
          Length = 895

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 124/263 (47%), Gaps = 7/263 (2%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  S      LT   E  R   E   ++NS +  +S++LR+PLT + 
Sbjct: 624 IPEQQRLLETFTLLVASALERLTLTASEEQARLTSERESLRNSLLAALSHDLRTPLTVLF 683

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L T  L S  SK +     I         LVN++LD+A + +G   L+   + L 
Sbjct: 684 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLHKEWLTLE 742

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    + +   +   +I++ +    +L     D     ++   +L NA  ++   + +
Sbjct: 743 EVVGSALRMLEPSLGGQHIQLDLPDPLQL--VHVDGPLFERVLINLLENAHKYAGARANI 800

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            ++A  D       V +NG  IP    +++F++F          GVGLGL+I ++ +++H
Sbjct: 801 GIRAEADARQLSLEVWDNGPGIPAGQEQAIFDKFARGNKESAIPGVGLGLAICQAIVDVH 860

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +S S+  EG  +    +P +
Sbjct: 861 GGTISASNRPEGGASFRVTLPGE 883


>gi|171915289|ref|ZP_02930759.1| signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 765

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 122/255 (47%), Gaps = 22/255 (8%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDL 593
           T+V++T     E+ L E     R A E        K+ FV  +S+E+R+P+  ++G   L
Sbjct: 339 TYVDMTRQKELEQQLREVQAMQRMACEQAEAASRSKSIFVASMSHEIRTPMNGVLGMLQL 398

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ +    L+  Q++ V     S+  LL ++ DILDL+ V++G M+L      L  L +E
Sbjct: 399 LRDT---PLSEAQAKLVHSAERSTDALLEVIGDILDLSKVESGKMELTIKPFQLASLFSE 455

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
           ++  +  +    +I++       L  +VA D   + QI   I+ NA+ F+ +G   +   
Sbjct: 456 IQSLMQVRADAKDIQMVFAVPADLPEWVAGDAGCIRQILINIIGNAVKFTERGRVDVEVE 515

Query: 710 --LKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
             L+ + + G  +     SV++ G    E+    +F  F  N   G  R  G GLGL+I 
Sbjct: 516 CSLRPSSEPGGKVVQLNVSVRDTGVGFGEEFFSRIFQPFSRNEEAGGLRQGGTGLGLAIS 575

Query: 762 ESFINLHGGHVSISS 776
           +S   L GG +S  S
Sbjct: 576 KSLAELMGGSISAHS 590


>gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1959

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 123/253 (48%), Gaps = 19/253 (7%)

Query: 541  TFVNVTDSV---RAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGF 590
             FV V+D     +AE+ LT+ NE L         A+  K+ F+ ++S+E+R+P+  IIG 
Sbjct: 1193 AFVLVSDITGIKQAEQRLTQLNEELTFARDRAEAANRAKSVFLANMSHEIRTPMNAIIGL 1252

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            T LL      S ++ Q + +  ++ ++  LL+++NDILDL+ +++G ++L  +   ++ L
Sbjct: 1253 THLLLRD---STDTVQQERLGQVTGAAHHLLDVINDILDLSKIESGKLELEQTDFPVDTL 1309

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-- 708
            L+     +  +     + + + S     S   D  RL Q    +LSNA+ F+ +GS V  
Sbjct: 1310 LSRACALVGERARAKGLELVLDSHRLPTSLRGDPTRLSQALVNLLSNAVKFTEQGSVVVR 1369

Query: 709  --ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
              I+    D     F V + G  +  +    +F  F        RR  G GLGL I    
Sbjct: 1370 AEIVHEDPDGLTVRFEVDDTGIGMAPEQIGRLFAAFEQADSSTTRRFGGTGLGLVITRHL 1429

Query: 765  INLHGGHVSISSS 777
              L GG V +SS+
Sbjct: 1430 AELMGGEVGVSSA 1442


>gi|206967994|ref|ZP_03228950.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
 gi|206736914|gb|EDZ54061.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
          Length = 896

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|159897796|ref|YP_001544043.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890835|gb|ABX03915.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 542

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 122/258 (47%), Gaps = 29/258 (11%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E N  L++ D +K+ F+   S+ELR+PL  ++G+  +++      + +    Y++ +  S
Sbjct: 289 EANSRLQELDRLKSEFISITSHELRTPLAVVLGYGIVIQERSEPPIRT----YLDRLVES 344

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKVIS 673
           +  +  +++D+  L  +D    +L    IVL++LL EV      +A K     + +    
Sbjct: 345 AQRMKEIIDDMTHLRRLDTRQTELQLEPIVLDELLYEVIDQMHGLAQK-KSQTLSLATPP 403

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----------------ARDN 716
           D  L +  ADR ++  +   +LSNAM F+     + ++A                     
Sbjct: 404 DA-LCTLYADRAKIALVLMSLLSNAMKFTPAEGMITVRAWCETVQSVPYEHAYFKGTLQP 462

Query: 717 GDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           G ++F SV ++G  IPE   + +F RF   A    R   G G+GL++V+  + LH GHV 
Sbjct: 463 GPWVFVSVSDSGIGIPESHLQRIFERFYQVAQSLTREYGGTGVGLALVQGLVALHNGHVW 522

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S +   +T    +P +
Sbjct: 523 VQSEEGRGSTFTVALPQR 540


>gi|45440759|ref|NP_992298.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Microtus str. 91001]
 gi|51595601|ref|YP_069792.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis IP 32953]
 gi|45435617|gb|AAS61175.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51588883|emb|CAH20497.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pseudotuberculosis IP 32953]
          Length = 957

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 452 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 511

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 512 ---QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLP 568

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD    
Sbjct: 569 LVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYL 627

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S 
Sbjct: 628 EFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISE 687

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 688 LGMGSIFAIRIP 699


>gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella
           amazonensis SB2B]
 gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella
           amazonensis SB2B]
          Length = 1287

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 124/242 (51%), Gaps = 12/242 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+ ++ E+ L +  E   +A   K+ F+ ++S+E+R+P+  ++G   LL+ +    L 
Sbjct: 512 DLTEQLKREQELADAREQALQASRAKSDFLANMSHEIRTPMNAVLG---LLQMTLQTELP 568

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y+E    ++  LL L+NDILD + ++AG ++L      L  LL ++   +++++ 
Sbjct: 569 PRPRDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQVQ 628

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           + +I  +  ++       + D  RL QI   +L+NA+ F+ KG  +I +   D GD    
Sbjct: 629 QKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGD-IITRIDADLGDDGTC 687

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                ++++G  +  +    +F  F        RR  G GLGL+I    ++L  G + ++
Sbjct: 688 HLHIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIRVT 747

Query: 776 SS 777
           SS
Sbjct: 748 SS 749


>gi|189500623|ref|YP_001960093.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides BS1]
 gi|189496064|gb|ACE04612.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides BS1]
          Length = 608

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 159/345 (46%), Gaps = 38/345 (11%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA---ATCSRYYNESDGWDL 499
           + E + V   +G IKL NPA   L+      L     I+  A   AT SR +      +L
Sbjct: 258 IREAIIVTDANGNIKLGNPAACRLFN-----LDCALMIKTGAGHKATDSRLF------EL 306

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERAL 555
              +  S     K     +    + VL+ S +P+   +    T+    ++T  +  ER  
Sbjct: 307 LERMTASGSTVEKEEVTVMTDRGERVLQVSAMPIIKRKIPEGTVFVMNDITKLLNLER-- 364

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYIS 614
                       ++  FV  VS+ELR+PLT+I G+T+ LL+ +   + N+K   +++ I 
Sbjct: 365 ------------MRRDFVSSVSHELRTPLTSITGYTETLLEGAIDDAENAKH--FLQIIL 410

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L  L+ND+LDL+ +++G ++  ++ + L  ++++V       + +  I ++V   
Sbjct: 411 QESERLTALINDVLDLSKIESGRIEYTFAPVCLRAIVDQVVDLFGRAIEKKGIVLRVQIP 470

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
             L    AD+  L  +   +L NA+ + ++ +  I+ +A    D +   VK+NG  IP  
Sbjct: 471 QDLPYVNADKGYLELVLRNLLDNAIKYVAEQNGQIMISASTVDDMVRVEVKDNGIGIPRK 530

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF  V  A      G GLGLSIV+  +  H G V + S
Sbjct: 531 DLGRIFERFYRVDKARSRAVSGTGLGLSIVKHIVLAHKGKVEVRS 575


>gi|332992705|gb|AEF02760.1| sensory box histidine kinase/response regulator [Alteromonas sp.
           SN2]
          Length = 929

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 136/263 (51%), Gaps = 26/263 (9%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y I+ +     +L F+ V  +++ +R L E    L+ A + K+ F+  +S+E+R+P+  I
Sbjct: 379 YIIVTICCVAILLFFMFVI-TLKQKRELRELALNLQNATDAKSEFLARMSHEIRTPVNAI 437

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G T L + S    +N +Q   +  I  SS  LL ++ND+LD + ++AG + +      L
Sbjct: 438 VGLTKLTQKS---VVNEEQKTNLSQIEQSSQTLLGVINDVLDFSKIEAGKLNIESEVFEL 494

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA---------DRQRLLQIFSKILSNA 698
           + L+ +V      ++H  N + K I   +L  +VA         D  R+ Q+ + +LSNA
Sbjct: 495 DKLVEQV-----IRLHGINAKEKRI---ELLQYVARDVPLQVSGDALRIEQVLNNLLSNA 546

Query: 699 MDFSSKGSTVIL--KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
           + F+ +G   +   K   ++G  + FSVK+ G  +  +  +S+F+ F        R+  G
Sbjct: 547 IKFTDEGMVFVSVNKKYSEHGVLLEFSVKDTGIGLSTNQIESLFDAFTQADESITRKYGG 606

Query: 754 VGLGLSIVESFINLHGGHVSISS 776
            GLGLSI +  ++L GG + + S
Sbjct: 607 TGLGLSICKHLVSLMGGEIWVES 629


>gi|301052639|ref|YP_003790850.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374808|gb|ADK03712.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 896

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFGATNISDMAASMHQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|298251657|ref|ZP_06975460.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546249|gb|EFH80117.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 484

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 5/220 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K  F+  VS+EL +PLT +   T L++         + +  +  +     
Sbjct: 250 NSARKELEQHKYDFLNIVSHELGTPLTAVKLQTHLVRKRLEKHSQHEAATELSRVEGPVK 309

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ ++LD + + AG ++     + L++LL EV     T  H +     V+      
Sbjct: 310 QLERLIAELLDASKIQAGRLEYVRKRVDLDELLREVTD---TMQHTSPSHTIVVRGSVQT 366

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S + DR RL Q+FS +LSNAM +S    TV ++ +         V+++G  IP + C  +
Sbjct: 367 SLIGDRDRLGQVFSNLLSNAMKYSPDAKTVEVELSSSEEAVTILVRDHGLGIPREQCDKI 426

Query: 739 FNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F RF     A      G+G+GLSIV   +  HGG + + S
Sbjct: 427 FERFYRADIARLRAIPGLGMGLSIVAEIVKGHGGTIVVDS 466


>gi|295106470|emb|CBL04013.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 552

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 127/245 (51%), Gaps = 15/245 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL   NE L +  + K+  +  V++ELR+PLT+II F  + + +      S++  + E I
Sbjct: 308 ALERLNEKLAEETQFKSDLLSMVNHELRTPLTSIITFAQISREACPPDRESERHSW-EEI 366

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKV 671
             +S ILL ++ND+LD+A  DAG + +    + L D+++ V+ ++    + +    R +V
Sbjct: 367 EKNSQILLTMINDMLDIARSDAGSVHVACEPMDLGDIVSSVRGTMTPLARKYCVAFRTRV 426

Query: 672 ISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNG 727
            SD  L  G F    QR+L+    + SNA+ F+  G TV L+   D  NG     + ++G
Sbjct: 427 ASDVPLVNGDF-EKTQRMLE---NLASNAIKFTPDGGTVELRVDLDAGNGSVRLCMADDG 482

Query: 728 SSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             I PED  + +F RF        R+  G GLGL++V  +  + G  VS+ S+    +T 
Sbjct: 483 IGIAPEDH-ERIFERFFQVDSTSTRKYNGSGLGLALVREYAAVQGFAVSVESALGRGSTF 541

Query: 785 NCRIP 789
              IP
Sbjct: 542 TITIP 546


>gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
 gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
          Length = 811

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 180 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELNTTQRDHLNTIERSANNLL 235

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L++V   +A   H+  + + + I +    + 
Sbjct: 236 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 295

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 296 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 355

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 356 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 397


>gi|228921243|ref|ZP_04084571.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838413|gb|EEM83726.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 312

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFSSQKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPYIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 311


>gi|332667143|ref|YP_004449931.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335957|gb|AEE53058.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 871

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 17/240 (7%)

Query: 550 RAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           + ++ L +KNE +    E        K+ F+ ++S+E+R+P+  I G TD+L      + 
Sbjct: 472 KTQKLLQQKNEIIEAEKENAENSERAKHQFLANMSHEIRTPMNAIKGMTDILIRR---NP 528

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N  Q +Y+  I  SS  LL ++NDILD++ ++AG ++L +    + +L+N V   +  K 
Sbjct: 529 NEDQKEYLNGIKQSSDSLLVIINDILDISKIEAGKVELEHEPFSVVELVNNVHTIMQFKA 588

Query: 663 HENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
            E  +  +K I    L +   D  RL QI   ++ NA+ F+ KG       +   GD I 
Sbjct: 589 EEKGLGLLKDIPTENL-TVQGDATRLRQILLNLIGNAIKFTEKGLVTTSVKSEQVGDKIN 647

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F+V + G  I  D    +F  F        R+  G GLGLSI +  + LH G + + S
Sbjct: 648 VHFTVSDTGIGIDADRMGKIFESFEQAYSDTSRKFGGTGLGLSISKKLVELHNGKIWVES 707


>gi|255009841|ref|ZP_05281967.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313147627|ref|ZP_07809820.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136394|gb|EFR53754.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 479

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 133/255 (52%), Gaps = 6/255 (2%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +S  + S IP+ NA+           V   + +TE     ++ D  K +F+  +S+EL++
Sbjct: 216 ESYFQASYIPIENAEAEKGEARNLGDVILLKNITE----FKELDSAKTTFISTISHELKT 271

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P++ I+    LL+  ++G LN +Q Q  + I  +S  LL++  ++L++  V+AG +++  
Sbjct: 272 PISAIMMSLQLLEDKRVGVLNGEQEQLSKNIKDNSQRLLDITGELLNMTQVEAGKLQMMP 331

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                 +L+    ++   +  + NI+I+V   + K+     D +++  + + +LSNA+ +
Sbjct: 332 KITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKIPKLFVDSEKIAWVLTNLLSNAIRY 391

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           S +   V++ A R+       V++ G  I     +S+F+R+       + +G GLGLSI 
Sbjct: 392 SKENGRVVIGARREEEYIELYVQDFGKGIDPRYHQSIFDRYF-RVPGTKVQGSGLGLSIS 450

Query: 762 ESFINLHGGHVSISS 776
           + F+  HGG +++ S
Sbjct: 451 KDFVEAHGGTLTVQS 465


>gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1242

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 119/238 (50%), Gaps = 13/238 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA  +   +K+ F+ ++S+E+R+P+  ++G T LL  ++L   ++KQ  +V+ I 
Sbjct: 568 LVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTEL---DTKQKDFVQAIR 624

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL+++NDILD + ++A  ++L      L + L  +   +A +     I +  I D
Sbjct: 625 TSADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVD 684

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNG 727
             +  ++  D  RL Q+   ++SN + F+  G   +  +   N D        + V++ G
Sbjct: 685 RNVPRYLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLRVSRPPNYDINAPLTLRYEVQDTG 744

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
             IP +  + VF  F        R+  G GLGL I +  + + GG + + S  D+G T
Sbjct: 745 IGIPAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGST 802


>gi|165938304|ref|ZP_02226862.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009958|ref|ZP_02230856.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211542|ref|ZP_02237577.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400347|ref|ZP_02305860.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419557|ref|ZP_02311310.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|294503231|ref|YP_003567293.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
 gi|165913682|gb|EDR32301.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165991354|gb|EDR43655.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207313|gb|EDR51793.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962298|gb|EDR58319.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050296|gb|EDR61704.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|262361270|gb|ACY57991.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D106004]
 gi|262365193|gb|ACY61750.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D182038]
 gi|294353690|gb|ADE64031.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
          Length = 926

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 421 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 480

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 481 ---QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLP 537

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD    
Sbjct: 538 LVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYL 596

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S 
Sbjct: 597 EFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISE 656

Query: 778 DEGVTTINCRIP 789
               +    RIP
Sbjct: 657 LGMGSIFAIRIP 668


>gi|162420651|ref|YP_001608241.1| two-component sensor/regulator [Yersinia pestis Angola]
 gi|165926708|ref|ZP_02222540.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|167402481|ref|ZP_02307936.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167418881|ref|ZP_02310634.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|162353466|gb|ABX87414.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis Angola]
 gi|165921331|gb|EDR38555.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166962875|gb|EDR58896.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048131|gb|EDR59539.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. UG05-0454]
          Length = 891

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E   A  +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L++ Q +  E  
Sbjct: 335 ALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTP---LDAGQMRLAETA 391

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
              S  LL ++N++LD + +++G M L+     L  LL++   +I ++    ++ +   I
Sbjct: 392 HQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFI 451

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S         D  RL QI   +L NA+ F+ +G  + L+  R N    F+V++ G  I  
Sbjct: 452 SANIPLELELDTLRLRQILVNLLGNAVKFTPQGR-IQLRVRRQNQTLCFTVEDTGCGIDV 510

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +++F  F+  +   Q  G GLGL+I ++   + GGH+++ S
Sbjct: 511 QHQQTIFQPFMQTSDHEQ--GTGLGLAIADNLAKMMGGHLTVFS 552


>gi|320656477|gb|EFX24373.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 918

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A+ N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRAQSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|294506832|ref|YP_003570890.1| PAS/PAC/histidine kinase protein [Salinibacter ruber M8]
 gi|294343160|emb|CBH23938.1| PAS/PAC/histidine kinase protein [Salinibacter ruber M8]
          Length = 851

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++K++ + ++S+E+R+PL ++IG  DLL+   +   L  + ++  E I  S   L   ++
Sbjct: 624 QLKSAMLANMSHEVRTPLMSMIGSADLLREDLEEAGLEGEPAEMAEQIFRSGQRLRETLD 683

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            +L+L+ +++G   L+  +  L  ++ EV Q +  + HE  +R++V   G       D  
Sbjct: 684 SVLELSRLESGAYTLDDDSAYLGVIVREVAQELHLRAHEKGVRLEVGGPGASVEVRLDET 743

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            + +I   ++ NA+ F+ +G  V ++    D    + +V++ G  I E+  + +F+ F  
Sbjct: 744 AVRRIVRNLVENAIKFTPEGGEVQVRVEPEDEETALLAVEDTGVGIAEEAREDIFDAFKQ 803

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    R   G GLGLSIV+    + GG + + S     T    R+P
Sbjct: 804 ESEGLDREYEGSGLGLSIVDRLTTMLGGTIEVESEKGVGTRFAVRLP 850


>gi|258621420|ref|ZP_05716454.1| sensor histidine kinase [Vibrio mimicus VM573]
 gi|258586808|gb|EEW11523.1| sensor histidine kinase [Vibrio mimicus VM573]
          Length = 733

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 19/256 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 332 TFNQKTVYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 384

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS   L  ++  +K   ++
Sbjct: 385 --TAKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSS 442

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              E  ++ ++   I D +   +  D+ RL QI   +LSNA+ F+ +G   +  +  +  
Sbjct: 443 LCFEKGLQFQLHSEIIDTRW--YYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENID 500

Query: 718 DFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D  F    V+++G  IP+D    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 501 DEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTV 560

Query: 773 SISSSDEGVTTINCRI 788
           S+ S     T    R+
Sbjct: 561 SVQSEVGQGTCFEVRV 576


>gi|237746860|ref|ZP_04577340.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229378211|gb|EEO28302.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 821

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 206/449 (45%), Gaps = 67/449 (14%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--GGTIWM----------FENLTV 421
           W E + +V ++  TH+      NG TL   VT  PR  G  +W+               V
Sbjct: 94  WNELVHAVTRAIRTHQ------NGYTL---VTRMPRKDGSHVWVNISNVFGEEYINGYPV 144

Query: 422 QVDLETKYNTLVKVQGE---TIDHLSEGVAVF--GPDGRIKL-SNPAFRSLWKTEENRLS 475
              + T  + LV++Q E   T D+L   VA F    +G + L  N  FR  +  ++NR  
Sbjct: 145 SYTVMTDVDDLVRMQKEQSITYDNLPGFVAKFQVNENGFLFLEGNERFRKFFGYKQNRAD 204

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSIIP 532
            G  + N+    +R         +       F  + K   G    L++ +D +      P
Sbjct: 205 YG--LSNLDTGKNRQAYAQHFPLMRKGKRVHFTLQAKDKTGGNVWLQVNADCIDRVHGNP 262

Query: 533 LPNAQTMLTFVNVTDSVRA---ERALTEKNEAL-------RKADEIKNSFVQHVSYELRS 582
           +     ++ ++++TD       ++ L E++E L        +A++ K+ F+  +S+++R+
Sbjct: 263 V----YLVIYIDITDITEQRELQKQLEERSEMLHNALQAAEQANKAKSDFLSQMSHDIRT 318

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  IIG T  +  S L     +    ++ I+ SS +LL L+N++LD++ +++G + +  
Sbjct: 319 PMNAIIGMT-AIAGSHLDD-KDRVRDCLQKITVSSRLLLGLINEVLDMSRIESGRISITE 376

Query: 643 STIVLNDLLNE----VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
               LN++L      ++ SI  K H  +I+ + +    +     D Q + Q+F  ILSNA
Sbjct: 377 EEFSLNEMLQNIVTIIQPSIMAKRHAFDIQARELQHENV---TGDPQHIQQVFLNILSNA 433

Query: 699 MDFSSKGSTVIL----KAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           + ++  G  ++L    K ++  G    +F+F  ++NG  +  +  + +F  F        
Sbjct: 434 VKYTPDGGKILLSIREKPSQTAGYGCYEFVF--RDNGYGMKSEFLRKIFKPFERAEDAAV 491

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSS 777
           R  +G GLG++I ++ + +  G + + S+
Sbjct: 492 RAVQGTGLGMAISKNIVQMMDGDIQVEST 520


>gi|261417770|ref|YP_003251452.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319767417|ref|YP_004132918.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261374227|gb|ACX76970.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317112283|gb|ADU94775.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 468

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   A  +  +A+ K DE K  F+ +VS+ELR+PL+ + G+++ L  + L     ++  Y
Sbjct: 222 RLAEAFNQMADAIAKEDERKREFLANVSHELRTPLSYMKGYSEAL-LAGLAKTKEEEKAY 280

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  +  LV D+LDLA ++   + L  + +    ++ +V  +      +  I +
Sbjct: 281 LRLIHRETERMERLVRDLLDLARLEGQSVPLERAPVAFAQVIEDVIATYEPIAAQKRIEL 340

Query: 670 K------VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI 720
                  +I +G       D  RL Q+   +L NA+ ++ +G  V ++ +R     G+ +
Sbjct: 341 ACELDYDIIVNG-------DANRLEQVVRNLLDNAIRYTPEGGVVTVRLSRLSEAEGELV 393

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +++ G  IP+D    +  RF  V  A   +  G GLGL+IV+  ++LH G +   S  
Sbjct: 394 --IQDTGKGIPKDQLPFLGQRFFRVDRARTRKEGGTGLGLAIVKQIVSLHDGAIRFDSDL 451

Query: 779 EGVTTINCRIP 789
               T+  R+P
Sbjct: 452 GRGMTVFVRLP 462


>gi|170025068|ref|YP_001721573.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis YPIII]
 gi|169751602|gb|ACA69120.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis YPIII]
          Length = 957

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L  
Sbjct: 453 LVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP- 511

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    
Sbjct: 512 --QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPL 569

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD     
Sbjct: 570 VVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYLE 628

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S  
Sbjct: 629 FRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISEL 688

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 689 GMGSIFAIRIP 699


>gi|114570744|ref|YP_757424.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341206|gb|ABI66486.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 858

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 16/236 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YV 610
           E  + E+   L  A++ K++F+ ++S+E+R+PL  I+G   +L+T+      SKQ Q   
Sbjct: 460 EARVAERTRELEAANQAKSTFLANISHEIRTPLNGILGLAQVLRTTS----RSKQRQDQA 515

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   L  L+ND+LD++ ++AG M+L+   +    L  ++           ++   
Sbjct: 516 RMIEESGETLTQLLNDVLDMSKIEAGKMELSPQVVDPARLFGDMHTLFQASAEAKSLDFS 575

Query: 671 VISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSV 723
           V  D  L   +  D  R+ Q  S +LSNA+ F+SKGS  +  +AR        G     V
Sbjct: 576 VEIDPSLPERLEFDPLRVRQCLSNLLSNAIKFTSKGSVQL--SARWHRETDQAGLLEIKV 633

Query: 724 KNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + G  IP +   ++F+ F  +  A  G+  G GLGLSI      L GG ++  ++
Sbjct: 634 CDTGIGIPPEKLDTLFSPFTQSDAAIAGEFGGTGLGLSIARDLARLMGGDITAEAT 689


>gi|194336761|ref|YP_002018555.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309238|gb|ACF43938.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 608

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 162/340 (47%), Gaps = 29/340 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + E + V    G I + NPA   +++   +   P    R ++     + ++S   +LFA 
Sbjct: 257 IREAIIVTDATGDITMVNPAASRMFRINGSMFKP----RPLS-----HLSDSKLQELFAR 307

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           + ++     K     +      +++ S +PL   +     V V + +            L
Sbjct: 308 VHSTRVTLHKEELSLMTTKGARIMQISSMPLTKEELFTGTVFVLNDI----------TKL 357

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           R  ++I+  FV  VS+ELR+PLT I G+T+ L     G+++  +  + +++ I  ++  L
Sbjct: 358 RNLEKIRRDFVASVSHELRTPLTVITGYTETLLD---GAMHEPEHATAFLQTILLATEQL 414

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679
             LVND+LDL+ +++G ++  +S + L  ++ +    +   + +  IR+ + I DG L +
Sbjct: 415 TALVNDVLDLSRIESGQIEYTFSAVDLKRMVQKSVDLLKPALDKKQIRLDIHIPDG-LPT 473

Query: 680 FVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             AD + L  +   +L NA+ +   +   + + A + +      +++NG  I +     +
Sbjct: 474 VYADPRYLDIVVRNLLDNAIKYVDDQNGKIRITAFKSDDHLRLEIEDNGIGIAKSDLGRI 533

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F RF  V  A   +R G GLGL+IV+  +  H G++ + S
Sbjct: 534 FERFYRVDKARSRERGGTGLGLAIVKHIVMAHKGNIDVRS 573


>gi|153871895|ref|ZP_02000948.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152071640|gb|EDN69053.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 490

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 13/238 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA+   T   E    A   K+ F+ ++S+ELR+PL  I+G+  +LK +K   L + Q   
Sbjct: 7   RAKDRATAAREQAEAASRSKSEFLSNMSHELRTPLNGILGYAQILKRNK--KLTTMQRDG 64

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I +S   LL L+NDILD++ ++AG M+L   ++ L + L+ +   I  +  E N+  
Sbjct: 65  LNVIDSSGRHLLTLINDILDMSKIEAGKMELYACSLNLQNFLDNIGGVIRMRAEEKNVFF 124

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI---- 720
           K      L   V+ D +RL QI   +L NA+ F+ +G  ++    L + +   D      
Sbjct: 125 KFEMPIPLPIGVSVDEKRLRQILINLLGNAVKFTQQGQVILRVTPLGSPQIKDDLQQQLI 184

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            F V++ G  + ++    +F  F        R+ G GLGL+I +  + L G  + + S
Sbjct: 185 RFEVEDEGIGMTQEELGKIFLAFEQVGDEKMRQAGTGLGLAISKRLVELMGSQLVVKS 242


>gi|42784055|ref|NP_981302.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42739986|gb|AAS43910.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 368

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 127/245 (51%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 124 ASEKLREAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 183

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + ++++  
Sbjct: 184 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLEA 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DNG+ +  V N G S
Sbjct: 242 RLNVDSHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNGEVVVQVINYGDS 300

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    VF+ F +   +    R G GLGL I ++ I  H G +S + S+   T    R
Sbjct: 301 IPEEDLPYVFDMFYTGDKSRTENRGGTGLGLFIAKNIIEQHNGTIS-AESNVVRTMFEVR 359

Query: 788 IPSKE 792
           +P  E
Sbjct: 360 LPKDE 364


>gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 659

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 11/233 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL+   EA   A   K++F+ ++S+ELR+P+  IIG T +LK      L   Q   +  
Sbjct: 256 QALSVAKEAAEAASRAKSTFLSNMSHELRTPMNAIIGMTYMLKRQNADPL---QVDKLGK 312

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++  LL L+ND+LDL+ +DA  M L  +   + +L  +V   +  +     +R  + 
Sbjct: 313 IDNAANHLLQLLNDVLDLSKIDAERMTLEQTAFSIPELAADVASLLTPRAESARLRFILD 372

Query: 673 SDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNN 726
            D +L     + D  RL Q+   +  NA+ F+ +G   ++ +   D+   +    SV++ 
Sbjct: 373 VDSRLKGLRLLGDPLRLQQVLLNLAGNAIKFTERGEVRIVARVVEDDEKAVHIELSVRDT 432

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           G  I  +    +FN F        R+  G GLGL I +  + L GG + + S+
Sbjct: 433 GIGIAPEAIGRIFNPFEQADGSTTRKYGGTGLGLPICQRLVRLMGGEIQVVST 485


>gi|78224191|ref|YP_385938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78195446|gb|ABB33213.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 807

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 117/224 (52%), Gaps = 17/224 (7%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  IIG+  LLK  + G+L  +Q QY+  I+ S   LL L+NDIL+++
Sbjct: 338 FLASMSHEIRTPMNAIIGYAQLLK--REGNLAPQQGQYLNVINNSGEHLLKLINDILEMS 395

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +++G + L       ++LL++V+   A +  +  +R  V   G++   + AD  ++ Q+
Sbjct: 396 KIESGTVNLTPVPFNFHNLLHDVESLFADRARQKKLRFDVRLQGEVPVVLDADEMKVRQV 455

Query: 691 FSKILSNAMDFSSKGS-TVILKAARDNGD----------FIFSVKNNGSSIPEDMCKSVF 739
              ++ NA+ F+ +G+  V + ++ D+ D              V+++G  I  +    VF
Sbjct: 456 LINMIGNALKFTDEGTIAVTVSSSTDSPDKERDTYGETAITVDVEDSGIGISAEEADQVF 515

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
             F      G+RR  G GLG+ I   F  L GG + +   + G+
Sbjct: 516 ALF-EQTESGRRRIGGTGLGMPISRQFARLMGGDLFLVRGEPGI 558


>gi|311696321|gb|ADP99194.1| integral membrane sensor signal transduction histidine kinase
           [marine bacterium HP15]
          Length = 597

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 6/211 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K+ FV  VS+ELR+PLT++ G   LL+    G L  K    V+    +S  L +L++
Sbjct: 358 DRLKDEFVSTVSHELRTPLTSVNGSLKLLQAGAAGELPPKARAMVDVAFRNSEQLQHLIS 417

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD     AG M ++   I +   ++E  Q   +      I +K   D +    +AD  
Sbjct: 418 DLLDFNKALAGRMPIHLGQIEVQRAVHEACQGNDSMARHYRIPLKP-EDCEQHWLMADPL 476

Query: 686 RLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           RL QI    +SNA+ FS    TV I  +   +     +V + G+ +PE     +F RF +
Sbjct: 477 RLRQILDNFISNAIKFSPVDGTVRIWSSYAPDNQIRITVADEGAGVPETFSDRLFQRF-A 535

Query: 745 NAHRGQRR---GVGLGLSIVESFINLHGGHV 772
            A  G  R   G GLGL+I      L GG V
Sbjct: 536 QAESGTERSKAGTGLGLAITRELAGLMGGEV 566


>gi|290510434|ref|ZP_06549804.1| two-component system, OmpR family, sensor histidine kinase KdpD
           [Klebsiella sp. 1_1_55]
 gi|289777150|gb|EFD85148.1| two-component system, OmpR family, sensor histidine kinase KdpD
           [Klebsiella sp. 1_1_55]
          Length = 895

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 124/263 (47%), Gaps = 7/263 (2%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  S      LT   E  R   E   ++NS +  +S++LR+PLT + 
Sbjct: 624 IPEQQRLLETFTLLVASALERLTLTASEEQARLTSERESLRNSLLAALSHDLRTPLTVLF 683

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L T  L S  SK +     I         LVN++LD+A + +G   L+   + L 
Sbjct: 684 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLHKEWLTLE 742

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    + +   +   +I++ +    +L     D     ++   +L NA  ++   + +
Sbjct: 743 EVVGSALRMLEPSLGGQHIQLDLPDPLQL--VHVDGPLFERVLINLLENAHKYAGARANI 800

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            ++A  D       V +NG  IP    +++F++F          GVGLGL+I ++ +++H
Sbjct: 801 GIRAEADARQLSLEVWDNGPGIPAGQEQAIFDKFARGNKESAIPGVGLGLAICQAIVDVH 860

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +S S+  EG  +    +P +
Sbjct: 861 GGTISASNRPEGGASFRVTLPGE 883


>gi|288959952|ref|YP_003450292.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912260|dbj|BAI73748.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 687

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 149/304 (49%), Gaps = 18/304 (5%)

Query: 497 WDLFAAIITS--FDDERKSL----QGTLELLSDSV---LEYSIIPLPNAQTMLTFVNVTD 547
           W+ F  ++ S  F+ +++++    + T+E++S ++   +E S+ P  +  ++  F ++T 
Sbjct: 245 WEAFPKVLGSEAFEAQKRAVREGREMTIEVISPTLGNWVEASLYPSADGLSVY-FRDITA 303

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +A++AL    E    A+  K  F+   S++LR PL  ++ F D+LK    G   S+ +
Sbjct: 304 RRQAQQALLTAKETAEAANLAKGKFLAAASHDLRQPLQALLLFVDVLKPHVQG---SQGA 360

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             + ++      L  L++ +LD++ +D+G+++    T+ +  L   +  S         +
Sbjct: 361 TALMHLGRGLDALKELLDSLLDMSRLDSGVVEPTIETVSIAPLFEHIAASYRPVAAAKGL 420

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V  D    +   DR  L+++   ++ NA+ ++ +G  + ++  +  G  +  V++ G
Sbjct: 421 ELHV--DPCAAAARTDRTLLIRMVRNLVENALRYTEQGR-IDIECRQAGGRLLIEVRDTG 477

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP D  + +++ F  V N  R + RG+GLGL+IV     L    V + S     T+  
Sbjct: 478 IGIPPDHLERIWDEFHQVGNPERDRNRGLGLGLAIVRRLSQLLNHPVEVRSKPGRGTSFI 537

Query: 786 CRIP 789
             +P
Sbjct: 538 IALP 541


>gi|229017209|ref|ZP_04174119.1| hypothetical protein bcere0030_17680 [Bacillus cereus AH1273]
 gi|229023386|ref|ZP_04179890.1| hypothetical protein bcere0029_17260 [Bacillus cereus AH1272]
 gi|228737947|gb|EEL88439.1| hypothetical protein bcere0029_17260 [Bacillus cereus AH1272]
 gi|228744089|gb|EEL94181.1| hypothetical protein bcere0030_17680 [Bacillus cereus AH1273]
          Length = 334

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 130/242 (53%), Gaps = 13/242 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  ++L S   +  QY
Sbjct: 91  RMAKNLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNQLHSNGEECEQY 149

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N VN +L+   ++   ++L+ S + +   + ++      ++ + ++  
Sbjct: 150 VSILKRKSYELKNQVNGLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPQLDDADMSF 209

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D +L   + D   ++++F  ++SN++ +   G  ++++ ++ + +    + N G  
Sbjct: 210 CIKGDKELHVEI-DVALMVRLFENVISNSIMYGKDGKEILIQVSKRDMNVEVEITNFGQC 268

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           IP++    VF +F    +RG++       G G+GL+I  S   LH G +++ S+D E V 
Sbjct: 269 IPKENLTYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNDKETVF 324

Query: 783 TI 784
           TI
Sbjct: 325 TI 326


>gi|189203185|ref|XP_001937928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985027|gb|EDU50515.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 918

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 131/241 (54%), Gaps = 18/241 (7%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++A  +K+ F+ ++S+E+R+P+  +IG ++LL      +LN +Q    E I  S+  L
Sbjct: 450 AAKEASRMKSQFLANMSHEIRTPIAGVIGMSELLFDM---NLNDEQKDCAENIHRSANSL 506

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKM----HENNIRIKVISD 674
           L ++NDILD + V++G + +      L+ +L +V +  S A +     ++++I+ +V +D
Sbjct: 507 LTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQDEVQAD 566

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSI 730
            ++   + D  RL QI + +L+N++ F+S G    S +I + ++D     FSV + G  I
Sbjct: 567 LRV---MGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGIGI 623

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            E++ K +F  F        RR  G GLGL+I ++ + L  G + + S     TT    I
Sbjct: 624 EEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWI 683

Query: 789 P 789
           P
Sbjct: 684 P 684


>gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio
           vulnificus CMCP6]
 gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus CMCP6]
          Length = 1129

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ AD++K+ F+   S+ELR+PL  +IG  + L +   G L S Q   ++ I 
Sbjct: 446 IQKQNDELQLADKLKDEFLATTSHELRTPLHGMIGIAETLISGANGPLPSNQRYQLDIII 505

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L  LV+D+LD   +  G + +  S + L      V +     +    +RI     
Sbjct: 506 KSGQRLATLVDDLLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVS 565

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +    AD QRL Q+   ++ NA+ ++++G  VI     D+   +  V + G  IP + 
Sbjct: 566 NDVAPVSADPQRLEQVLYNLIGNAIKYTTEGKIVISANVVDDKVRV-QVVDTGQGIPAEQ 624

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 625 LEHIFEPLIQAGRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLP 681


>gi|227514652|ref|ZP_03944701.1| possible sensor histidine kinase [Lactobacillus fermentum ATCC
           14931]
 gi|227086961|gb|EEI22273.1| possible sensor histidine kinase [Lactobacillus fermentum ATCC
           14931]
          Length = 344

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 14/240 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  + L K   +++ F+   S+E R+P+ +I GF DL++  +L     ++  Y+  IS  
Sbjct: 110 QMTDQLAKTATLRDDFINQFSHEFRTPIASIQGFADLMQERELPK--KERQAYLALISKE 167

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-----ATKMHENNIRIKV 671
           +  L NL  ++L L T+++  +  N ++    DL  +V+Q++       K H+ N+ + +
Sbjct: 168 AHRLTNLSTNVLTLTTLESQTILNNQTSF---DLTEQVRQTVILLWPQLKEHKLNVDLTL 224

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                 G+  AD   L Q++  +++NA+ F+  G  + +K  R +     SV N+G  I 
Sbjct: 225 APATAFGN--ADL--LNQVWVNLINNAIKFTPDGGHLTIKIERHDDQIAVSVNNDGPLIS 280

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 +F +F    +R     +GLGL+I    I LH GH+++ S+    TT    +PSK
Sbjct: 281 PTDQDHLFEKFYQADNRSNVGRLGLGLAIASRIIALHQGHITVVSNPADHTTFTVYLPSK 340


>gi|254518069|ref|ZP_05130125.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium sp. 7_2_43FAA]
 gi|226911818|gb|EEH97019.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium sp. 7_2_43FAA]
          Length = 519

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 116/213 (54%), Gaps = 5/213 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+++G+  L+K  K    N  + +Y+      S  L  
Sbjct: 290 RRAEKTKSELITNVSHDLRTPLTSVMGYIGLIKEGKYEDENMMK-EYLNIAFNKSNQLKE 348

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFV 681
           L+ D+ +   ++   + L  + + + + L+++ +       EN I + K   D K    +
Sbjct: 349 LIEDLFEYTKLNNKGIALERTKVNIVEFLSQIIEEYIPVFEENEIEVVKKFVDEKCMVEI 408

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  +++++F  + SNA+ +S K   VI+ +  +NG    ++KN G +IP++  + +F+R
Sbjct: 409 -DAGKMVRVFENLFSNAIKYSFKPGNVIVSSYENNGFVNIAIKNRGENIPQEKVERLFDR 467

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           F  V  A     +G GLGL+I ++ I LH G +
Sbjct: 468 FYRVDEARNSNTKGSGLGLAISKNIIELHNGSI 500


>gi|223936067|ref|ZP_03627981.1| histidine kinase [bacterium Ellin514]
 gi|223895289|gb|EEF61736.1| histidine kinase [bacterium Ellin514]
          Length = 552

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 107/212 (50%), Gaps = 3/212 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E+K++FV  VS+ELR+P+ ++    + L+  K+ S   KQ +Y  +I      L +L+ +
Sbjct: 318 EMKSNFVSSVSHELRAPIASVRLMAEGLERGKI-SEPKKQHEYFHFIVQECRRLSSLIEN 376

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD + ++ G  +  +    L  L  +  + +     E  IRI++   GK  S   D + 
Sbjct: 377 VLDFSRIEQGRKQYEFDPTDLVKLAEQTVKLMQAYAEEQRIRIELEVKGKARSVDLDGKA 436

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           + Q    ++ NA+  S KGS V +       +    V++ G  IP    + +F RF  + 
Sbjct: 437 MQQALVNLIDNAVKHSPKGSVVKVGLEFAENEVALWVEDQGEGIPAAEHQKIFERFYRLG 496

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  R + +GVG+GLSIV+  +  HGG V + S
Sbjct: 497 SELRRETQGVGIGLSIVKHIVEGHGGKVLVRS 528


>gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1238

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D    +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|116053129|ref|YP_793450.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588350|gb|ABJ14365.1| putative sensor histidine kinase/response regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 770

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 18/223 (8%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD  K+ F+  +S+E+R+PL  I+G  +LL+ + LG    +  Q +  ++ +   LL ++
Sbjct: 275 ADRAKSRFLATMSHEIRTPLNGILGMAELLREASLG---ERDRQRLRALATAGEGLLAIL 331

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGS 679
           N++L  A ++            L  LL +V   +  +  EN  R+ +     + DG  G+
Sbjct: 332 NEVLHFARLEEAADVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGA 391

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGD--FIFSVKNNGSSIPEDMC 735
                Q L Q+ + +L NA+ F+  G   +   + AR  G      SV ++G  IPE+M 
Sbjct: 392 ----EQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARSAGSERLRLSVADDGIGIPEEMR 447

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F RF        RR  G GLGL+I +  +   GG + + S
Sbjct: 448 ERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVES 490


>gi|107102594|ref|ZP_01366512.1| hypothetical protein PaerPA_01003658 [Pseudomonas aeruginosa PACS2]
          Length = 705

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M  ++++T+  R  R L    EA+R+ADE    K+ F+  +S+E+R+P+  +IG  +L+ 
Sbjct: 182 MNGWIDITERERLARQL---REAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL 238

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    + S  V Y +A S  L  L+ DILD+A +++G + L    + L  ++  V+
Sbjct: 239 QRLAPEQRERASLEVAYEAAGSLQL--LIGDILDVAKIESGHLTLTPERVRLRHVVESVR 296

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       +  +R+ V  D   G  V  D  R  Q+ S ++SNA+ F+ +G   I    R
Sbjct: 297 RMFEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERGQVTIRLQER 356

Query: 715 --DNGDFIFSVKNNGSSI---PEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
             D G  I  V    S I   P D  + +F  F+  A  R  + G GLGL+I    ++L 
Sbjct: 357 SLDEGRAIVRVDVEDSGIGIAPADQAR-LFQPFIQVAKGRTVQGGTGLGLAICRKLVDLM 415

Query: 769 GGHVSISS 776
           GG V + S
Sbjct: 416 GGDVEMHS 423


>gi|72162742|ref|YP_290399.1| multi-sensor signal transduction histidine kinase [Thermobifida
           fusca YX]
 gi|71916474|gb|AAZ56376.1| multi-sensor signal transduction histidine kinase [Thermobifida
           fusca YX]
          Length = 553

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 15/248 (6%)

Query: 551 AERALTEKNEAL-RKADEIKNS------FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           A RAL E++E L R+ +E++ S      F    S++L+ PL  +  F  LL+    G L+
Sbjct: 282 ARRALQEQSELLERQTEELRRSNLELEQFAYVASHDLQEPLRKVASFCQLLQRRYHGKLD 341

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y+++    +  +  L+ND+L  + V  G  K N++T+ LN  LN+   S+   + 
Sbjct: 342 ERADAYIDFAVEGAKRMQVLINDLLAFSRV--GRTK-NFTTVDLNSALNDALASLEPALE 398

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFS 722
           E      V++   L     D+  L Q+F  ++SNA+ F     + V +   R+  +++F 
Sbjct: 399 EAE---AVVTGDPLPEVQGDQTLLTQVFFNLISNAVKFRGDNPARVHISVRREGNEWVFC 455

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS-SSDEGV 781
             +NG  I     + +F  F     R +  G G+GL++ +  +  HGG + +   SDE  
Sbjct: 456 CADNGIGIEPQYAERIFVIFQRLHTREKYGGTGIGLAMCKKIVEFHGGRIWLDVDSDEPG 515

Query: 782 TTINCRIP 789
           T I   +P
Sbjct: 516 TRICWSLP 523


>gi|89100386|ref|ZP_01173250.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
 gi|89084905|gb|EAR64042.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
          Length = 587

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 3/229 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+K ++++  FV +VS+EL++P+T+I GF++ L    +    +  S +++ I   S  L 
Sbjct: 355 LKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAMHD-QAALSAFLDIILKESDRLQ 413

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+ D+LDL+  +    +L+   + L+ LL E    +  K  +  I I+       G   
Sbjct: 414 SLIQDLLDLSKTEQQGFRLSVQEMDLSSLLGECLAILNGKAKDKAIDIEYSDQSGNGWIK 473

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+F  +L+NA+ ++ +G  + +            VK+ G  I +D    +F R
Sbjct: 474 GDPHRLKQVFINLLTNAITYTPQGGKISVSLEEKEDKVQVEVKDTGMGIDQDEIPRIFER 533

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  +  A      G GLGL+IV+  +  H G +++ S     TT   ++
Sbjct: 534 FYRIDKARSRNSGGTGLGLAIVKHLVEAHKGSITVESEVGKGTTFKVQL 582


>gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1238

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNAL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D    +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|298251004|ref|ZP_06974808.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297549008|gb|EFH82875.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1352

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N A ++ ++ K+ F+   S+ELR+PL  +   T L++       + + +  +  +     
Sbjct: 1118 NSARKELEQRKDDFISMASHELRNPLAALKMQTQLVRKRLERQSHHEAATALAKVEGPVK 1177

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      
Sbjct: 1178 RLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTMQQIQTTHTI---VVRGAAPR 1234

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            S V D+ RL QIF+ ++SNA+ +S    TV +  +         V++ G  IP +    +
Sbjct: 1235 SLVGDKDRLGQIFTNLISNAIKYSPGAETVEIDMSASPETVTIRVRDYGLGIPREQRDKI 1294

Query: 739  FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            F RF       Q+   G+G+GL IV   I  HGG +++ S
Sbjct: 1295 FERFYRATGPKQKAIPGLGMGLYIVAEIIKRHGGTITVES 1334


>gi|255025902|ref|ZP_05297888.1| hypothetical protein LmonocytFSL_05345 [Listeria monocytogenes FSL
           J2-003]
          Length = 459

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 126/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L +   ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D    ++  D + L Q++S +L+NA+ F+ +   + +    +  +    V+++G  I +
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQDGNIQIHLYEEGTNVFVEVQDSGVGISK 398

Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            DM K +F+RF  +N  R +  G  GLGLSI +  I LH G V++ SS E  TT   ++P
Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457


>gi|237748247|ref|ZP_04578727.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379609|gb|EEO29700.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 692

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 145/307 (47%), Gaps = 18/307 (5%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           D    II + D   ++L+    + +   +  SI+      T+  + N+ +  R   AL++
Sbjct: 86  DALVKIIQTADTNVRNLEKKTAMTAVFSIVVSILLGAAIITLTIYFNLMERKRLT-ALSK 144

Query: 558 KNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +   LR        A+  K  F+  +S+E+R+P+  IIG T +          ++    +
Sbjct: 145 READLRDALVLAQNANNAKKEFLSRMSHEIRTPMNGIIGMTTI--AGNYLDDRTRVEDCL 202

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ SS  LL+L+ND+LD++ ++ G + +N     L   L  V   +  +  E+ +  +
Sbjct: 203 AKIAFSSRHLLSLINDVLDMSKIEEGKLAINREPFKLQPFLESVISIVWLQAKEHGLAFE 262

Query: 671 -VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVK 724
             ++D    +F+ D  R+ QI   +LSNA+ F+ KG TV L+  +     +     FS+ 
Sbjct: 263 TALADITADTFIGDSMRINQILLNLLSNALKFTLKGGTVRLQVKQFILKNNEVRLRFSIS 322

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + E+    +F  F        ++  G GLG++I ++ +NL GG + + SS    T
Sbjct: 323 DTGIGMSEEFLSRLFIPFEQAPSTISKKYGGTGLGMAITKNLVNLLGGTIHVKSSPGKGT 382

Query: 783 TINCRIP 789
           TI   +P
Sbjct: 383 TITVELP 389


>gi|168029047|ref|XP_001767038.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162681780|gb|EDQ68204.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 330

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 121/236 (51%), Gaps = 13/236 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD++K+ F+ ++S+E+R+PL  II  T+L   ++    + +Q +Y++ +  S+  LL +
Sbjct: 1   QADKMKSQFLANMSHEIRTPLNGIINCTELCLDTRT---SPEQQEYLDLVRFSAKHLLRI 57

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVA 682
           + DILD + ++AG +++      L D L      +A + ++  + +    D  +    + 
Sbjct: 58  ITDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARANKKGLELACQVDHTVPDQIIG 117

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+F  ++ N++ F+++G  ++    +    DN + +FSV++ G  IP+     +
Sbjct: 118 DPGRLFQVFVNLIGNSIKFTAEGEVIVSAMVKSRNGDNIELLFSVRDTGIGIPKQKQSLL 177

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT---TINCRIP 789
           F  F  V ++      G GLGL I        GG + + S  +G T   T N  IP
Sbjct: 178 FQAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGTMWVESEGKGSTFSFTANFHIP 233


>gi|153948861|ref|YP_001401729.1| RcsB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960356|gb|ABS47817.1| sensor kinase protein RcsC [Yersinia pseudotuberculosis IP 31758]
          Length = 949

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L  
Sbjct: 445 LVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP- 503

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    
Sbjct: 504 --QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPL 561

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD     
Sbjct: 562 VVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYLE 620

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S  
Sbjct: 621 FRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISEL 680

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 681 GMGSIFAIRIP 691


>gi|330921689|ref|XP_003299527.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
 gi|311326752|gb|EFQ92366.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
          Length = 1358

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 131/241 (54%), Gaps = 18/241 (7%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++A  +K+ F+ ++S+E+R+P+  +IG ++LL      +LN +Q    E I  S+  L
Sbjct: 728 AAKEASRMKSQFLANMSHEIRTPIAGVIGMSELLFDM---NLNDEQKDCAENIHRSANSL 784

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKM----HENNIRIKVISD 674
           L ++NDILD + V++G + +      L+ +L +V +  S A +     ++++I+ +V +D
Sbjct: 785 LTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQDEVQAD 844

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSI 730
            ++   + D  RL QI + +L+N++ F+S G    S +I + ++D     FSV + G  I
Sbjct: 845 LRV---MGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGIGI 901

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            E++ K +F  F        RR  G GLGL+I ++ + L  G + + S     TT    I
Sbjct: 902 EEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWI 961

Query: 789 P 789
           P
Sbjct: 962 P 962


>gi|162418760|ref|YP_001605841.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Angola]
 gi|162351575|gb|ABX85523.1| sensor kinase protein RcsC [Yersinia pestis Angola]
          Length = 949

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L  
Sbjct: 445 LVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP- 503

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    
Sbjct: 504 --QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPL 561

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD     
Sbjct: 562 VVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYLE 620

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S  
Sbjct: 621 FRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISEL 680

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 681 GMGSIFAIRIP 691


>gi|115377385|ref|ZP_01464590.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|310824780|ref|YP_003957138.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365596|gb|EAU64626.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397852|gb|ADO75311.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 968

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 110/211 (52%), Gaps = 3/211 (1%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ + S+E+R+PL  IIG+ DLL   +   L +   + +  +  ++  LL L+NDI
Sbjct: 339 LKSEFLANFSHEIRTPLNGIIGYCDLLMREEGSRLTAHGRRDLNVVKTNAKTLLALINDI 398

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ ++AG +++    +   +L  E   ++   +   ++ + +  D +      D  +L
Sbjct: 399 LDLSKIEAGRVEVVVERVDGQELAEECLATVREYVKGRDVELTLHVDERARYLNTDALKL 458

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+   +LSNA  F+  G  V L    D  + + +V++ G  +P D    +F +F  V  
Sbjct: 459 RQVMLNLLSNAAKFTESGE-VSLGLRADGNELVMTVEDTGVGMPADQLPFIFEKFRQVDG 517

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +   +  G GLGL+IV     + GG+V++SS
Sbjct: 518 STTRKVGGTGLGLAIVRELSKVLGGNVTVSS 548


>gi|317486683|ref|ZP_07945500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316922066|gb|EFV43335.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 630

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 128/258 (49%), Gaps = 9/258 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++ F+ V     A   +  K E   +A+  K+ F+  +S+++R+P++ IIG T + K  K
Sbjct: 216 LIGFIGVLGIGGATFQINRKKEQAEEANRAKSVFLSRMSHDIRTPMSAIIGLTAIAK--K 273

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 + ++ ++ I+ +S   L+LVNDILD++ +++G M+L      L  ++++V    
Sbjct: 274 NAGDPERLNECIDKIALASQFQLSLVNDILDVSKIESGKMQLASEPFDLAGIIDDVTLFT 333

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARD 715
           ++      I  +   D ++G  +V D  RL QI   +LSNA+ F  +   V L+  + R 
Sbjct: 334 SSSATAKGIVFETSVDPRIGRMYVGDPMRLKQILMNLLSNALKFVDENGKVTLRVESLRR 393

Query: 716 NGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGH 771
            G        V +NG  +     K +F  F  + A R +R G GLGL+I+ +   L GG 
Sbjct: 394 TGRQEAVRLIVSDNGIGMSNAFQKRMFLPFEQDAAPRRKRSGSGLGLAIIGNLTALMGGS 453

Query: 772 VSISSSDEGVTTINCRIP 789
           +++ S     T     IP
Sbjct: 454 IAVDSELGKGTRFTVDIP 471


>gi|309789570|ref|ZP_07684151.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308228306|gb|EFO81953.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 463

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 5/229 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +A ++++     ++++LR+PLT + G+ + L+   L        +    + A   IL 
Sbjct: 228 LARAIQLRHQMTADIAHDLRTPLTVLSGYLESLRDQIL----KPTPERFATLYAEVQILQ 283

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV+D+  L+  DAG + L         +L  V ++      +  I I       L   V
Sbjct: 284 RLVDDLHTLSLADAGELTLQRHPCPPAQILAHVAETYRHAAEQAGITISDTVASNLPEVV 343

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +RL +    ++SNA+  +  G  + L+A +D    +  V +NG  IP +   ++F R
Sbjct: 344 VDDERLCRALGNLVSNAIRHTPAGGQIELRAEQDGDHLLLQVCDNGEGIPTEHLPNIFER 403

Query: 742 -FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + ++  R Q  G GLGL+IV S I  HGG + + S+    +    R+P
Sbjct: 404 LYRADQARQQAGGSGLGLAIVRSIIEAHGGTLGVESAPGAGSRFWVRLP 452


>gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1355

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 22/239 (9%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EAL  A   K+ F+  +S+E+R+P+  +IG T LL  + L  +   Q  +VE I +SS
Sbjct: 660 RDEAL-AATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLV---QQDFVETIRSSS 715

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-K 676
             LL+L+NDILD + +++G + L      L   L E    +ATK    ++ +    D   
Sbjct: 716 DALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFIDAYT 775

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------NGDFIFS------- 722
               V D  R+ QI   +LSNA+ F+++G  ++  +A+            ++S       
Sbjct: 776 PNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSVSAKPLFSDLELTAKSMYSTHYQIEV 835

Query: 723 -VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            V + G  IP D    +F  F  V  +   Q  G GLGL+I +    + GG + + S D
Sbjct: 836 AVSDTGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGD 894


>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
 gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
          Length = 837

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 117/233 (50%), Gaps = 10/233 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  +  + E+   A+  K  F+ ++S+E+R+P+  IIG T+LL  ++L     +Q +Y+
Sbjct: 156 AKDVIQSQKESADAANRAKGQFLANMSHEIRTPMNGIIGMTELLLETELAP---QQHEYL 212

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S+  L++++NDILD + ++AG +++      L + L ++ +++A + H   + + 
Sbjct: 213 QMIKTSADCLVSVINDILDFSKIEAGKLEIESIPFQLRENLGDLMKTLAFRAHGKGLELV 272

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKN 725
             +          D  RL QI   ++ NA+ F+  G  V+     + +  +    F+V +
Sbjct: 273 AHVRPDVPWRMTGDPGRLRQILVNLVGNAIKFTEHGEIVVRVDIDEISETDALLHFTVCD 332

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  IPE   + +F  F        R+  G GLGLSI    + L  G + + S
Sbjct: 333 TGIGIPEAALQKIFAAFEQADGTTTRKFGGTGLGLSICSRLVELMHGKIWVES 385


>gi|109898421|ref|YP_661676.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700702|gb|ABG40622.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1042

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 9/221 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+KA  IK++F+ ++S+E+R+PL  IIG  +L+K      L+  Q +Y+E    S   L 
Sbjct: 507 LQKASGIKSAFISNISHEMRTPLNGIIGTLNLVKREH---LSENQQRYIEMTEVSVNTLS 563

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            LVND+LDL+ ++AG + L+       +L+  +  S+A K  E  +   + +S     S 
Sbjct: 564 TLVNDVLDLSKIEAGKLDLDIKPFNPVNLIESLCGSMAVKAQEKGLEFIIDVSALNYQSM 623

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           V+D  R  QI + +++NA+ F+  G   +    +  +D      ++ ++G  I ++    
Sbjct: 624 VSDPHRFSQILTNLVNNAIKFTETGYIKVSAHTELVKDKVHLHCAIADSGEGIAKENQDK 683

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +F+ F    ++   +  G GLGLSI    + L  G V+ +S
Sbjct: 684 LFSAFSQADSSVASKHGGTGLGLSICRQLVTLLKGEVNFTS 724


>gi|330996319|ref|ZP_08320203.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329573369|gb|EGG54980.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1364

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 10/250 (4%)

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            + F+ V +  + +R + EK+    + +E +  F  ++S+E+R+P+T I+  + L+K  K 
Sbjct: 793  MVFLQVKEHFKTKR-IFEKHRQEEELNEARIQFFMNISHEIRTPMTLIL--SPLMKLMKQ 849

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                + Q  Y   +  +S  +L L+N ++D   ++ G  +L Y  + +   +N + +   
Sbjct: 850  DQDEAHQRSY-SLMYQNSQRILRLINQLMDARKIEKGQFRLKYHKVEMVGFVNNLYELFE 908

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
            T      I    + D +      D Q   ++   +LSNA  F+  G  + ++    +G  
Sbjct: 909  TTARNRGITFCFVHDMERMDVCVDPQNFDKVIMNLLSNAFKFTPDGGDITIELKEVDGNV 968

Query: 718  ----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                DF  SV ++G  IP+   K VF RF S    G   G G+GL++ +  + LH GH+ 
Sbjct: 969  SGERDFRLSVTDSGVGIPDQEKKRVFERFYSGKWGGDYVGTGIGLNLTKLLVELHEGHIW 1028

Query: 774  ISSSDEGVTT 783
              ++ +G  T
Sbjct: 1029 AENNPKGKGT 1038


>gi|325507737|gb|ADZ19373.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 654

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 164/356 (46%), Gaps = 21/356 (5%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            ++ L +GV +   D ++   N A R ++   +++   G  I  I   C           
Sbjct: 279 VLEKLKDGVIIKNED-KVVFMNEAQRKMFGLTKDKTVEGIDINKIVHRCC---------- 327

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                  + ++E+K +    + L   V  + I       T+    +V+D +  +++  E+
Sbjct: 328 -----CKAQNNEKKIITAGGKELYLEVEAFGITINGERLTLDIVKDVSDEILVKKS-KEE 381

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISAS 616
            E ++K D++K  F  ++++ELR+P+  I     ++  +  K        ++Y++ +  +
Sbjct: 382 IEKVKKTDKLKGEFFTNITHELRTPINVIYSALQVMEMRIDKNNFDRRNLNKYMKVLKQN 441

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL ++++++D+  +D G +K   S   +  L+  +  SI   +HE  + +   +  +
Sbjct: 442 CYRLLRIISNLIDITKIDTGFLKPCVSNREIIGLIENITMSIVPYLHEKGMELVFDTYVE 501

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D   + +I   +LSNA+ F  +   V++         +  VK+NG  IP++  K
Sbjct: 502 EKYVQCDPDMVERIMLNLLSNAVKFRKEKGLVLVTIHDKGSRIVLKVKDNGIGIPKEKQK 561

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F RF  ++  H    +G G+GLS+V+S + ++GG +S+ S +   TT     P+
Sbjct: 562 MIFKRFKQINPLHVTPHQGSGIGLSLVKSIVEMNGGKISVESEENVGTTFIIEFPA 617


>gi|228957374|ref|ZP_04119133.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802323|gb|EEM49181.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 896

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF------------ 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +   + +  +  +            
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSYDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|225017491|ref|ZP_03706683.1| hypothetical protein CLOSTMETH_01418 [Clostridium methylpentosum
           DSM 5476]
 gi|224949730|gb|EEG30939.1| hypothetical protein CLOSTMETH_01418 [Clostridium methylpentosum
           DSM 5476]
          Length = 500

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 122/233 (52%), Gaps = 9/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L K DE++   + ++S++LR+PLT I  ++++++   L   N+ ++  V+ I   +  L 
Sbjct: 273 LSKVDELRRELIANISHDLRTPLTMITAYSEVMR--DLPGENTPEN--VQVIIDEARRLT 328

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LD++ + +G  +L  +   L + ++      +  +  +   I+ +SD ++  FV
Sbjct: 329 TLVNDLLDISKIQSGAQELCLTEYNLTESIHTTLLRYSKLVENDGYHIRFVSDQEV--FV 386

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  +L Q+   +++NA+ ++ K   V ++           V + G  IP D    +++
Sbjct: 387 QADESKLSQVIYNLINNAVTYTGKDKAVTIRQIVLGNAVRIEVADTGDGIPADELPYIWD 446

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           R+  V   H+  R G GLGLSIV++ + +HG    +SS     +T    +PS+
Sbjct: 447 RYYKVDKTHKRARVGTGLGLSIVKAVLEMHGARYGVSSIPGQGSTFWFELPSQ 499


>gi|254412527|ref|ZP_05026301.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180837|gb|EDX75827.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 667

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 137/300 (45%), Gaps = 59/300 (19%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD+   +    +  E    A+  K++F+  +S+ELR+PL  I+G ++LL+       +
Sbjct: 362 DITDAKLVQIEFQQAKEEAEAANRAKSAFLASMSHELRTPLNGILGLSELLRE------D 415

Query: 604 SKQSQYVEYISASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           ++   Y +++     I      LLNL+ DILD++ ++AG M L   +  ++ L+ EV+++
Sbjct: 416 AEDLGYTDFVPDLQQIYDSGLHLLNLITDILDISKIEAGKMSLYLESFDISTLIVEVQKT 475

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
           +   + +    ++V     LG+  ADR ++ Q+   ++SN+  F+  G T++L   R+  
Sbjct: 476 VQPLIKKKTNTLEVHGAASLGTMYADRTKVKQLLLNLISNSAKFTENG-TIVLSVTRESE 534

Query: 716 ----------------NGDF--------------------------IFSVKNNGSSIPED 733
                           NG+                           IFSV + G  +  +
Sbjct: 535 NEGNGNSKRDAKMLLVNGELSVVSSATLDSASMPDAGNDDQTSDWVIFSVSDTGIGMTPE 594

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  FV       ++  G GLGL+I + F  + GG++ + S     +T +  +P+K
Sbjct: 595 QAAKIFQPFVQADDSTTKKYGGTGLGLAICQRFCEMMGGNIQVESEVGVGSTFSFYLPAK 654


>gi|150390956|ref|YP_001321005.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950818|gb|ABR49346.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 474

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 119/228 (52%), Gaps = 3/228 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL ++ +  +  ++++  FV  VS+EL++P++ I G+T+ L+   + +   ++ +Y   I
Sbjct: 236 ALQKELQNEKNLEKMRKEFVARVSHELQTPISLIKGYTEALEDG-MATNEKEREEYFTII 294

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 + NLV D+LDL  +++G  K+N   + +  ++            E N+R +V +
Sbjct: 295 EDEINKMSNLVRDLLDLGQLESGNFKVNVEQLDIGVMVQRSLWKFELFKKEKNLRFQVDT 354

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +    + D  R+ Q+ + +L NA++ +  G  + +    +  +   SV N G+ I E+
Sbjct: 355 SMESCEVLGDEYRIEQVLTNLLQNAVNHTESGGLISVSIQEEKENIKISVYNEGNPISEE 414

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
              S++  F   +   +++G GLGL+IV++ + LHG    + + +EG+
Sbjct: 415 ERMSIWESFYKGSE--EKKGTGLGLAIVKNVLELHGSQYGVENHEEGI 460


>gi|145599745|ref|YP_001163821.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Pestoides F]
 gi|145211441|gb|ABP40848.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides F]
          Length = 926

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 7/251 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L  
Sbjct: 422 LVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP- 480

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    
Sbjct: 481 --QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPL 538

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  ++    RD     
Sbjct: 539 VVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTGCIILQVRVRD-CYLE 597

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S  
Sbjct: 598 FRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISEL 657

Query: 779 EGVTTINCRIP 789
              +    RIP
Sbjct: 658 GMGSIFAIRIP 668


>gi|330720537|gb|EGG98819.1| Sensor protein torS [gamma proteobacterium IMCC2047]
          Length = 995

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 126/242 (52%), Gaps = 14/242 (5%)

Query: 558 KNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           K+EA RK    A   K +F+  +S+E+R+P+  I+G   LL  +   SL+ KQ  +   I
Sbjct: 472 KHEAARKQAEQASRAKTTFLAMMSHEIRTPMNGILGTLRLLDKT---SLSEKQRYFTNII 528

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +++S  LL+++ND+LD +++DAG +++      L+ L++EV   +A    E  + +K   
Sbjct: 529 NSASRSLLDILNDVLDFSSIDAGKIEVGQLPFDLHALVDEVITLMAPTAEEKGLYLKATF 588

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGS 728
           D  +      D  +L Q+   +++NA+ F+ +G   +     + A  + +    + + G 
Sbjct: 589 DTDIDRPLKGDPSKLRQVLLNLITNAIKFTQQGGVELRVNTQEVANHHVELHLEIIDTGI 648

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E M ++VF  F  V+ +   +  G+GLGL+I +  +   GG +  S +  G T +  
Sbjct: 649 GIDESMMEAVFEPFTQVNTSLTKKEGGIGLGLAICQRLMMAMGGTIEASRAAHGGTCMAV 708

Query: 787 RI 788
           ++
Sbjct: 709 QL 710


>gi|323499018|ref|ZP_08103998.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315853|gb|EGA68884.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 570

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 172/368 (46%), Gaps = 59/368 (16%)

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY--NESDGWD---------LFAAIITSF 507
           SNP F+ ++  + ++     ++R ++  C  ++  N+ D ++         +F+A+IT  
Sbjct: 84  SNPNFQGIYWQDSDK-----YMRALSGECIIFFEPNKLDEFEHLSSLGNGPVFSALIT-- 136

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR--AERALTE-------- 557
                   G    ++DS++   +I     Q  L + +     R   ERALT+        
Sbjct: 137 --------GAKATITDSII--LLIGRKAGQFTLDYRDTLSRFRPLVERALTDIERIEQLQ 186

Query: 558 -----KNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                K + L+       KA+E K+ F+  +S+ELR+PL+ ++G+ D+L    L  L  +
Sbjct: 187 QLVDIKTQQLKLAQVKAEKANEAKSRFLAMMSHELRTPLSAVLGYIDVL----LADLKQE 242

Query: 606 -QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + +E + +S+ +LL L+NDIL+L+ +++G   + Y  + LN  L  V +        
Sbjct: 243 NQLEILEKMESSAELLLVLINDILELSRIESGEFPIKYQWVRLNTELKFVLEHFYALADA 302

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             ++  V I   +  S   D  R++QI   ++ NA+ F+  G  V L A   N   + +V
Sbjct: 303 KGLKFSVNIEFDESLSLWIDPARVMQIVFNLVGNALKFTHAGE-VCLTANVINQHLVITV 361

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I +D    VF+ F        R   G GLGL+I +  + L  G++S+ S     
Sbjct: 362 KDTGIGIDKDRLDIVFSEFKQADDSITRSYGGTGLGLTISKHLVGLMSGNISVKSKLGQG 421

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 422 STFRIELP 429


>gi|291568868|dbj|BAI91140.1| multi-sensor signal transduction histidine kinase [Arthrospira
           platensis NIES-39]
          Length = 856

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 34/299 (11%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           + D ++    I L N   +LT   ++T+  +AE  L    EA  +A++ K+ F+ ++S+E
Sbjct: 552 IRDWLIAIEPIQLENTPCLLTLASDITEHKQAEE-LRRAKEAAEQANQAKSLFLANMSHE 610

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV---EYISASSTILLNLVNDILDLATVDAG 636
           LR+PL  I+G+++LL+     + +  Q  +V   + I  +   LL L++DI+D + ++AG
Sbjct: 611 LRTPLNAILGYSELLQED---AQDIGQDDFVADLKNIHVAGQHLLTLISDIIDFSKIEAG 667

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +  +     +N LL EV+ +IA    +N+ ++ +     L     D  ++ Q    +LS
Sbjct: 668 RINFHLEKCQINTLLWEVETTIAPLAEKNHNQLTLEVAPGLDLMYTDVTKVRQSLLNLLS 727

Query: 697 NAMDFSSKGSTVI-----LKAARDNGD------------------FIF-SVKNNGSSIPE 732
           NA  F+ +G  ++     L  A D  D                  FIF  V++ G  + E
Sbjct: 728 NACKFTEQGQVILRVWQQLIPATDLPDLPIYHSPESPSETLSEISFIFWQVQDTGIGMNE 787

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +VF+ F        R+  G GLGLSI      + GG + + S     +T+  R+P
Sbjct: 788 RQIATVFSPFTQADESTTRKYGGTGLGLSITHKLCQMMGGDLWVESQLNQGSTLTMRLP 846


>gi|255526346|ref|ZP_05393260.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|255509923|gb|EET86249.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
          Length = 441

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 127/232 (54%), Gaps = 5/232 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTIL 620
           +++ D+++  F  ++S++LR+PL  I+    L+K+    + N ++S +Y + I  +S  L
Sbjct: 177 MKEIDKLRTDFFTNISHDLRTPLNIILSALQLMKSFNNLNCNEEKSFKYFKSIKQNSLRL 236

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+N+++D+  +D+G  ++      + +++ ++  S+A  +   +I +   ++ +    
Sbjct: 237 LKLINNLIDITKIDSGYFEIRTGNYNIVNIVEDITLSVAQYVENKSITLTFDTNTEEKFM 296

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  ++ +I   ++SNA+ F++ G  + +    ++   +  V++ G  IPE+    +F 
Sbjct: 297 ACDPDKVERIMLNLISNAIKFTNPGGHIFINMFDEDDYIVICVEDTGIGIPEEDLDIIFE 356

Query: 741 RFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF   ++R   R   G G+GLS+V+S + +HGG +S+ S+    T    ++P
Sbjct: 357 RF-RQSNRASARNYTGSGIGLSLVKSLVEMHGGKISVRSTYGKGTKFVIKLP 407


>gi|73539168|ref|YP_299535.1| PAS [Ralstonia eutropha JMP134]
 gi|72122505|gb|AAZ64691.1| PAS [Ralstonia eutropha JMP134]
          Length = 1060

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 12/216 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+E+R+PL  I G T L     +G  +S +Q QY+  I  S   L  +VNDI
Sbjct: 512 KSQFLANMSHEIRTPLNGISGMTHL----AIGEPDSGRQGQYLARIEESCQHLQRIVNDI 567

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           LD + ++AG++ ++ ++  L  LL+ V      ++ +  + +++  D  L    + D QR
Sbjct: 568 LDFSKMEAGMLAVDAASFPLARLLDHVLSLFREQVRKKGLVLQMEVDPALPLHVIGDSQR 627

Query: 687 LLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRF 742
           + QI   +L NA+ F+  G   + ++A   + D +   F V + G  I ED    +F+ F
Sbjct: 628 IGQILINLLGNALKFTDAGEIRLRVRACNADDDTVAVRFEVSDTGIGIAEDALLVLFSPF 687

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                   RR  G GLGL+I +    L GG +++ S
Sbjct: 688 HQADSSAARRFEGTGLGLAISKRLAELMGGRITVQS 723


>gi|94314643|ref|YP_587852.1| two-component regulatory system sensory histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93358495|gb|ABF12583.1| sensor protein, histidine kinase-response regulator [Cupriavidus
           metallidurans CH34]
          Length = 784

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 12/253 (4%)

Query: 534 PNAQTM--LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           PN  T+     ++VT+  R    L   +     A E K+ F+  +S+E+R+PL  +I   
Sbjct: 274 PNGATLWYAYAMDVTEMQRYNTLLATASREAEAATEAKSRFLATMSHEIRTPLATVIASL 333

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLL+ S+   L++ Q + ++    S+ +LL ++ DILD + ++AG MKL  + I L  ++
Sbjct: 334 DLLRESE---LSTHQREELDLADHSAKLLLEILGDILDFSRIEAGEMKLEQAPIDLRLII 390

Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI- 709
            +V +  A ++ +  + +   +  G   + + D  RL QI   ++ NA  F+ +GS V+ 
Sbjct: 391 EDVLRIQARQIEKKGVILDFYVEAGLAATLLGDAVRLRQIVLNLVGNATKFTLQGSIVVR 450

Query: 710 --LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
             L A       I   V + G  IP +   ++F  F        RR  G GLGLSI    
Sbjct: 451 ALLIADHPETQTIQLEVSDTGIGIPAEKQAALFKAFSQADVSTTRRFGGSGLGLSICSRL 510

Query: 765 INLHGGHVSISSS 777
           +   GG V ++S+
Sbjct: 511 VQAMGGAVVLTST 523


>gi|229589756|ref|YP_002871875.1| putative two-component system fusion protein [Pseudomonas
           fluorescens SBW25]
 gi|229361622|emb|CAY48502.1| putative two-component system, fusion protein [Pseudomonas
           fluorescens SBW25]
          Length = 1243

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 6/235 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +N+A   A++ K+ FV  VS+ELR+PLT I+   + L  + L   + +    ++    ++
Sbjct: 543 RNQA-ETANQAKSDFVATVSHELRTPLTLILAPLEQLSAATLPPADWRVQ--IDRAQRNA 599

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+N VNDILD +  +AG  +L  + I LN ++  + +  A         +    D  L
Sbjct: 600 LRLMNRVNDILDFSKAEAGKFELCPAPIDLNKMVGVLAEDAAMVAEGKGCTLTCSIDPAL 659

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCK 736
           G+   D +   +I   ++SNA+ F+  G TV L     +GD F  +V+++G  I  D   
Sbjct: 660 GTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTALDGDRFELAVQDSGIGIAPDKLP 719

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF  + N+      G G+GL++V+  + L GG V ++S     +    R+P
Sbjct: 720 LLFQRFSQIDNSATRHYSGTGIGLALVKYLVELMGGEVGVNSEPGQGSCFFVRLP 774


>gi|228901110|ref|ZP_04065314.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
 gi|228858516|gb|EEN02972.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
          Length = 277

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 47  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 105

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     +    +A
Sbjct: 106 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 165

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + S+G  + L A   N      + N G  IP      +F RF
Sbjct: 166 DGDKLVRVFENLIINAIAYGSEGRYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 225

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S DE  T     +P K
Sbjct: 226 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDEKTTFTVKLLPYK 276


>gi|283853339|ref|ZP_06370587.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571263|gb|EFC19275.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 923

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 11/221 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A++ K  F+  V++E+R+PL +I G  D L ++   SLN  Q + +  I  SS  LL +
Sbjct: 395 EANKTKTDFLAKVTHEIRTPLNSIKGMNDYLLST---SLNDDQRECLSIIKESSNHLLTI 451

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           VND+LDL+ ++AG +   +    L  L+    + +    ++  + + V  +G     V  
Sbjct: 452 VNDLLDLSKIEAGQLVFEHIDFALKQLIESTIRILQPLANQKKLDLHVAYEGDADIVVRG 511

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKS 737
           D  R+ Q+   + +NA+ F+  G+  I+ +     + D      S+K+ G  I  +  + 
Sbjct: 512 DPSRIRQVLFNLANNALKFTQTGTVGIVASVAWQESLDAYAITISIKDTGIGIAAEALQR 571

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  FV + +   R+  G GLGLSI    I L GG +++SS
Sbjct: 572 IFQPFVQSDNSTSRKFGGTGLGLSICNQLIALMGGTIAVSS 612


>gi|317152332|ref|YP_004120380.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942583|gb|ADU61634.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 765

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 16/248 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+   E    ADE K+ F+  +S+E+R+P+  ++G  +LL  +   SLN  Q +YV    
Sbjct: 365 LSRAREMAESADEAKSQFLARMSHEIRTPMNAMLGAGELLAET---SLNGDQRRYVSIYQ 421

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++   L  LV D+LDL+  ++G  +L  +   L   +++       +     + ++   D
Sbjct: 422 SAGEHLRELVRDVLDLSRFESGRFRLEETPFSLRSAIDKACAVFTLEARNKGLDLRCCVD 481

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKN 725
                  V D   L Q+   +L N++ F+ +GS  +   +   G           F+V++
Sbjct: 482 PDTPDRLVGDPTALRQVLVNLLGNSIKFTPQGSVSLGVRSVGAGHEADGQTCTLEFTVQD 541

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
            G  IP D  + +F RF        R+  G GLGLSI  + +   GG +++ S   EG T
Sbjct: 542 TGIGIPVDKQEVIFERFSQADGSTSRKYGGTGLGLSICRNLVTFMGGSIAVDSQPGEGTT 601

Query: 783 -TINCRIP 789
            T   R+P
Sbjct: 602 LTFTVRLP 609


>gi|228899677|ref|ZP_04063929.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
 gi|228859957|gb|EEN04365.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
          Length = 896

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|229078308|ref|ZP_04210872.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
 gi|228704983|gb|EEL57405.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
          Length = 883

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|83745653|ref|ZP_00942711.1| Sensor protein baeS [Ralstonia solanacearum UW551]
 gi|207739499|ref|YP_002257892.1| two-component sensor histidine kinase protein [Ralstonia
           solanacearum IPO1609]
 gi|83727730|gb|EAP74850.1| Sensor protein baeS [Ralstonia solanacearum UW551]
 gi|206592878|emb|CAQ59784.1| two-component sensor histidine kinase protein [Ralstonia
           solanacearum IPO1609]
          Length = 535

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 17/240 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYISA 615
           E L    +++      +S+ELR+PL  + G      D ++     SL S Q++       
Sbjct: 292 ETLEANQKMRRQLTADISHELRTPLAVLRGELEALEDGVRALTPASLTSLQAEV------ 345

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---I 672
               L  L++D+ +L+  D G +  +   I L D +    Q   +++ E  I +++    
Sbjct: 346 --GTLSKLIDDLYELSLADVGALAFHMEAIDLTDTVCSAAQGFTSRLMEKRIALQLDLPT 403

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +  +   D QRL Q+   +L N + ++  G T+ +   RD   +   V+++   +PE
Sbjct: 404 GPSRDAAIQGDPQRLRQLMQNLLENTLRYTDAGGTLRIHVHRDGAWWCLDVQDSAPGVPE 463

Query: 733 DMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            M   VF+R F ++  R + + G GLGLS+ ++ +  HGG +    S  G   +  R+P+
Sbjct: 464 AMLPRVFDRLFRADPSRSRAQGGAGLGLSLCQTIVQAHGGTIDARPSPLGGLWLAIRLPA 523


>gi|117925597|ref|YP_866214.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609353|gb|ABK44808.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 844

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 14/250 (5%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-L 594
           +Q +  F+ + D  + ERAL    EA  +A + K+ F+ ++S+E+R+P+  I G T L L
Sbjct: 394 SQGLAYFIALID--QRERALRWAKEAAEQAAQAKSEFLANMSHEIRTPMNAITGLTGLCL 451

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           KT     LNSKQ  Y+  +  ++  LL +V+DILD + V+AG + L  +   L  + + +
Sbjct: 452 KTD----LNSKQRDYLTKVEGAARSLLRIVDDILDFSKVEAGCLVLEETDFELESVFDHL 507

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              I+ K HE  + +       + +++  D  RL QI   + SNA+ F+ +G  V+  A 
Sbjct: 508 STMISQKAHEKGLEVVYGVPRSVPTYLRGDPLRLSQILINLASNAVKFTEEGDIVVQVAV 567

Query: 714 ----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +     FSV+++G  + +   + +F+ F        RR  G GLGL+I +  + +
Sbjct: 568 DRYLEEQVVLHFSVRDSGMGMSQPQLERLFHSFTQADSSTTRRFGGTGLGLTISKRLVEM 627

Query: 768 HGGHVSISSS 777
             G + + SS
Sbjct: 628 MQGKIWVESS 637


>gi|323694952|ref|ZP_08109102.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323501042|gb|EGB16954.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1032

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 119/225 (52%), Gaps = 15/225 (6%)

Query: 564 KADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTI 619
           +AD +   K  F+  +S+E+R+P+  I+G T + +++   + N +Q  + +E +  SS  
Sbjct: 644 RADAVSQAKTDFLSRMSHEIRTPMNAIVGMTAIARSA---AGNKEQVLKCLEKLDNSSKY 700

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+LVNDILD++ +++G M+LN + ++L+  L+ + + +  +     +   + +D +   
Sbjct: 701 LLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSIDEMVRMQAEAKGLSFTIQNDCRTER 760

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNG-DFIFSVKNNGSSIPED 733
              AD+ RL Q+   ++ NA+ F+  G ++ L        D G    FS+ + G  I  +
Sbjct: 761 HLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHPVKEEDTGLALRFSLADTGIGISPE 820

Query: 734 MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  S+FN F   A     Q  G GLGL+I    + + GG + + S
Sbjct: 821 VLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQMMGGVLDVKS 865


>gi|319900475|ref|YP_004160203.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319415506|gb|ADV42617.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 716

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 16/242 (6%)

Query: 550 RAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++ R L +KN+ L       + A+ +K+ F+Q++S+E+R+PL +I+GF+ L+    +   
Sbjct: 466 KSMRQLQKKNQELAVARDEAQSANRMKSLFIQNMSHEIRTPLNSIVGFSQLIANPDMELE 525

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q +Y E I ++S +L  LVND+L L+ + +G      ++    DL    ++SIAT  
Sbjct: 526 PEEQQEYSELIVSNSELLTTLVNDLLGLSELQSGKYVTKIASHSCADL---CRESIATVT 582

Query: 663 HE--NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGD 718
           H    ++++    D     + + D QR+ Q+    L+NA   + +G   +  +  +  G 
Sbjct: 583 HRKPQDVKLYYTCDTPPDYTILTDGQRVRQVLINFLTNAEKHTERGEIHLHCSLTEVPGS 642

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             FSV + G  IP +  + +F RF       Q  G GLGLSI     +  G  V + +S 
Sbjct: 643 VTFSVADTGCGIPPEEAEHIFGRFEKLDDFSQ--GFGLGLSICRLIADYMGAAVKLDTSY 700

Query: 779 EG 780
           +G
Sbjct: 701 KG 702


>gi|229060824|ref|ZP_04198179.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603]
 gi|228718471|gb|EEL70103.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603]
          Length = 448

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ D+++  FV +VS+E +SPL++I GF+  L++  +     ++ +Y++ I   S  
Sbjct: 220 KSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSE--EERKRYLKIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFHLQKQIKDVIFMLEWKWREKDIAVEF--DVPNIT 335

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q++S I +N++ FS+ G TV           + S+ +NG  + ++    +F
Sbjct: 336 IQGDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEELESSIVISISDNGIGMEKEEMDRIF 395

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 396 DRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 447


>gi|167755207|ref|ZP_02427334.1| hypothetical protein CLORAM_00712 [Clostridium ramosum DSM 1402]
 gi|167705257|gb|EDS19836.1| hypothetical protein CLORAM_00712 [Clostridium ramosum DSM 1402]
          Length = 486

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 8/241 (3%)

Query: 557 EKNEALRKAD--EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYI 613
           EK EA  + +  ++K++ ++ +S++LR+PLT+I G  + L  + L  + S  S   ++ I
Sbjct: 245 EKEEARLQVEREKLKSTLLRSISHDLRTPLTSIAGGANFL-VNNLDIVESDTSLNIIQDI 303

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S  +  L  +V ++L++  +  G  K+N    V++D+++    +I  +   + + +K   
Sbjct: 304 SKEAMRLNGMVENLLNMTRIQEGNFKINKKLEVVDDIISTAVSAITNRKENHELVVKETK 363

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  L  F  D Q ++Q+   +L NA   +   S V+LKA   N + IF V +NG  I   
Sbjct: 364 DIIL--FPCDAQLIVQVLVNLLDNAFKHTPDASKVMLKAFVRNNNIIFQVIDNGKGIEIK 421

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F+ F + +  +   +RG+GLGL+I ++ +  H G +   ++D G  T    +P +
Sbjct: 422 QLNHIFDDFFTTSLDNGDHKRGIGLGLAICKAIVEAHKGEIKAFNNDLGGATFELSLPLE 481

Query: 792 E 792
           E
Sbjct: 482 E 482


>gi|21231592|ref|NP_637509.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768286|ref|YP_243048.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113281|gb|AAM41433.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573618|gb|AAY49028.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1146

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 12/238 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A  +K+ F+  +S+ELR+PL  I+G++ L++        +K  
Sbjct: 744 SLQAETAARNQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQADAFEP--AKLG 798

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  I  S+     +++D+LD++ + +G ++L      +  L     + +        I
Sbjct: 799 KGLVVIERSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPTAQARQI 858

Query: 668 RIKVISDGKL-GS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           R+++  D  L GS  F  D  RL Q+ + ++SNA+ F++    V +    +       V+
Sbjct: 859 RLEL--DAPLQGSLWFFGDAGRLQQVLTNLISNALKFTAPEGDVRVSLEVEEQRLRLCVR 916

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I  D    VF+RF        RR  G+GLGLSI    I+LHGG +  SS  EG
Sbjct: 917 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLIDLHGGSLGASSDGEG 974


>gi|22124428|ref|NP_667851.1| two-component sensor/regulator [Yersinia pestis KIM 10]
 gi|45440264|ref|NP_991803.1| two-component sensor/regulator [Yersinia pestis biovar Microtus
           str. 91001]
 gi|21957214|gb|AAM84102.1|AE013653_2 putative response regulator [Yersinia pestis KIM 10]
 gi|45435120|gb|AAS60680.1| two-component sensor/regulator [Yersinia pestis biovar Microtus
           str. 91001]
          Length = 929

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E   A  +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L++ Q +  E  
Sbjct: 373 ALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTP---LDAGQMRLAETA 429

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
              S  LL ++N++LD + +++G M L+     L  LL++   +I ++    ++ +   I
Sbjct: 430 HQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFI 489

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S         D  RL QI   +L NA+ F+ +G  + L+  R N    F+V++ G  I  
Sbjct: 490 SANIPLELELDTLRLRQILVNLLGNAVKFTPQGR-IQLRVRRQNQTLCFTVEDTGCGIDV 548

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +++F  F+  +   Q  G GLGL+I ++   + GGH+++ S
Sbjct: 549 QHQQTIFQPFMQTSDHEQ--GTGLGLAIADNLAKMMGGHLTVFS 590


>gi|95931367|ref|ZP_01314079.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132583|gb|EAT14270.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 704

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 168/358 (46%), Gaps = 33/358 (9%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           T + +++ + +  P G I+  N A R +  +  + L   +  +N+               
Sbjct: 358 TFESITDAITILDPQGNIRKQNLAARRISNSYGSALKNSSQRKNLVPVAGAP-------- 409

Query: 499 LFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             + ++     E+ ++Q    + +++S    +I PL  A  ML  V +   +      TE
Sbjct: 410 --SPLLEQAVTEQSAVQQVYHDAVTNSYFRITITPLIYAGEMLGAVQLVHDI------TE 461

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +     +++++K+  V  VS+E+R+PLT I+GF + ++ ++  +  +++  Y   I    
Sbjct: 462 QT----RSEKLKSETVAAVSHEIRTPLTAIMGFVEFMQNNETTA--AERRSYFVTIQKEM 515

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L+ND LDL  + + ++   +  + L ++L +       +M   + ++   S G +
Sbjct: 516 ERLQELMNDFLDLQRLQSSLVPYLFGPVDLEEVLQDTVNLF--RMVSEHHQLVFNSPGNI 573

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D +RL Q+F  ILSNA+ +S  G TV        G     +K+ G  IP    + 
Sbjct: 574 PKITGDSKRLQQVFKNILSNAVKYSPDGGTVTTSLRISQGHVFVWIKDEGIGIPPQDQEK 633

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT-----TINCR 787
           +FNRF  V ++ R    G+GLGL++V+  +N H G V + S+  +G T      INC+
Sbjct: 634 IFNRFYRVDDSDRRIPGGLGLGLTLVQEIVNAHQGRVWVESALGKGSTFFVELPINCQ 691


>gi|315651805|ref|ZP_07904809.1| two component sensor histidine kinase [Eubacterium saburreum DSM
           3986]
 gi|315485935|gb|EFU76313.1| two component sensor histidine kinase [Eubacterium saburreum DSM
           3986]
          Length = 510

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 129/251 (51%), Gaps = 16/251 (6%)

Query: 550 RAERALTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +A   L E NE L++        DE++  F+ +VS+EL++P++ I G+ + L     G  
Sbjct: 261 KAIGKLREANEVLKEDIKRKEAIDEMRKDFIANVSHELKTPISLIQGYAEGLNE---GLC 317

Query: 603 NSKQSQ--YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             K+S+  Y E I   S  +  +V  +L L+++++G   L+     L  L   V  S + 
Sbjct: 318 EDKESRKYYTEVIMDESEKMNKMVKQLLTLSSLESGNSILHKENFNLTSLTEGVLNSTSI 377

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + E N+++   ++  +  + AD  ++ ++ +  +SNA++  +   T+ +  + D+ D  
Sbjct: 378 LISEKNVKVDFDTEKDIFLY-ADEFKIEEVVTNYISNAINHVNDNGTIRINVSEDDKDIC 436

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           FSV N G  IPE    +V+ +F  V  AH     G G+GLSIV++ +  HGG V + +  
Sbjct: 437 FSVYNTGKQIPEKDLYNVWEKFFKVDKAHSRSYGGSGIGLSIVKAIVEAHGGAVRVVNKT 496

Query: 779 EGVTTINCRIP 789
           +GV     +IP
Sbjct: 497 DGV-EFGFKIP 506


>gi|296388461|ref|ZP_06877936.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 741

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M  ++++T+  R  R L    EA+R+ADE    K+ F+  +S+E+R+P+  +IG  +L+ 
Sbjct: 218 MNGWIDITERERLARQL---REAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL 274

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    + S  V Y +A S  L  L+ DILD+A +++G + L    + L  ++  V+
Sbjct: 275 QRLAPEQRERASLEVAYEAAGSLQL--LIGDILDVAKIESGHLTLTPERVRLRHVVESVR 332

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       +  +R+ V  D   G  V  D  R  Q+ S ++SNA+ F+ +G   I    R
Sbjct: 333 RMFEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERGQVTIRLQER 392

Query: 715 --DNGDFIFSVKNNGSSI---PEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
             D G  I  V    S I   P D  + +F  F+  A  R  + G GLGL+I    ++L 
Sbjct: 393 SLDEGRAIVRVDVEDSGIGIAPADQAR-LFQPFIQVAKGRTVQGGTGLGLAICRKLVDLM 451

Query: 769 GGHVSISS 776
           GG V + S
Sbjct: 452 GGDVEMHS 459


>gi|288962184|ref|YP_003452479.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288914450|dbj|BAI75935.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 882

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 5/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASS 617
            +A   A+  K  F+  +S+ELR+PL  +IGF DL+     G + +    QY   +  S 
Sbjct: 351 RQAAEAANHAKGEFLAGLSHELRTPLNAVIGFADLIAREAEGPVGTPSYRQYAANVRDSG 410

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +L L+N+ILD A  +AG + +      L    +   + +  +     + +        
Sbjct: 411 QHVLELINEILDHARAEAGALTIEEGRCDLEAAADFAVRMLTPRAERAGVLLTAAVMPAA 470

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE---DM 734
                D +R+ QI   ++ N + ++  G +V L    + G  +  V + G  IP    D 
Sbjct: 471 RMLRGDDRRIRQILLNLIGNGVKYTPSGGSVTLSVLLEEGVPVIRVTDTGLGIPAGDVDR 530

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               F R  S A+R    G GLGL +    + LHGG +++ S+    TT+  R+P+
Sbjct: 531 VLEPFARVESAANRAV-EGAGLGLPLTRRLVELHGGVLTLRSTLGVGTTVTVRLPA 585


>gi|228985006|ref|ZP_04145174.1| hypothetical protein bthur0001_17080 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774694|gb|EEM23092.1| hypothetical protein bthur0001_17080 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 276

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 130/245 (53%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 30  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 88

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+++L+   ++   ++L+   + +  L+ ++      ++ + N+  
Sbjct: 89  VSILKRKSYELKNQVDELLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 148

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + SD  L   V D   ++++F  ++ N++ +   G  + ++ +    +    +KN G  
Sbjct: 149 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 207

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S   LH G +++ S+D+  T  
Sbjct: 208 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGMGLAISKSIAQLHQGDITVRSNDKE-TVF 263

Query: 785 NCRIP 789
             ++P
Sbjct: 264 TVKLP 268


>gi|207724836|ref|YP_002255233.1| two-component sensor histidine kinase protein [Ralstonia
           solanacearum MolK2]
 gi|206590061|emb|CAQ37022.1| two-component sensor histidine kinase protein [Ralstonia
           solanacearum MolK2]
          Length = 535

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 17/240 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYISA 615
           E L    +++      +S+ELR+PL  + G      D ++     SL S Q++       
Sbjct: 292 ETLEANQKMRRQLTADISHELRTPLAVLRGELEALEDGVRALTPASLTSLQAEV------ 345

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---I 672
               L  L++D+ +L+  D G +  +   I L D +    Q   +++ E  I +++    
Sbjct: 346 --GTLSKLIDDLYELSLADVGALAFHMEAIDLTDTVCSAAQGFTSRLMEKRIALQLDLPT 403

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +  +   D QRL Q+   +L N + ++  G T+ +   RD   +   V+++   +PE
Sbjct: 404 GPSRDAAIQGDPQRLRQLMQNLLENTLRYTDAGGTLRIHVHRDGAWWCLDVQDSAPGVPE 463

Query: 733 DMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            M   VF+R F ++  R + + G GLGLS+ ++ +  HGG +    S  G   +  R+P+
Sbjct: 464 AMLPRVFDRLFRADPSRSRAQGGAGLGLSLCQTIVQAHGGTIDARPSPLGGLWLAIRLPA 523


>gi|254853972|ref|ZP_05243320.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300765001|ref|ZP_07074989.1| histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|258607361|gb|EEW19969.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300514301|gb|EFK41360.1| histidine kinase [Listeria monocytogenes FSL N1-017]
          Length = 591

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +R  + +++ FV +VS+EL++P+T + GF + LL  +    +  K+  ++  I   S  L
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKK--FLTIIKEESDRL 416

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ DIL L+ ++   +  N   + +++++ +  ++I     E NIR+ +         
Sbjct: 417 HRLIMDILALSRIEQNPVAENVELVDIDEVIEQSARTIFEMATEKNIRVTIPEKTSASVM 476

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      VF
Sbjct: 477 IETDRDKLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDRVF 536

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 537 ERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|254236017|ref|ZP_04929340.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719]
 gi|126167948|gb|EAZ53459.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719]
          Length = 741

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M  ++++T+  R  R L    EA+R+ADE    K+ F+  +S+E+R+P+  +IG  +L+ 
Sbjct: 218 MNGWIDITERERLARQL---REAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL 274

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    + S  V Y +A S  L  L+ DILD+A +++G + L    + L  ++  V+
Sbjct: 275 QRLAPEQRERASLEVAYEAAGSLQL--LIGDILDVAKIESGHLTLTPERVRLRHVVESVR 332

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       +  +R+ V  D   G  V  D  R  Q+ S ++SNA+ F+ +G   I    R
Sbjct: 333 RMFEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERGQVTIRLQER 392

Query: 715 --DNGDFIFSVKNNGSSI---PEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
             D G  I  V    S I   P D  + +F  F+  A  R  + G GLGL+I    ++L 
Sbjct: 393 SLDEGRAIVRVDVEDSGIGIAPADQAR-LFQPFIQVAKGRTVQGGTGLGLAICRKLVDLM 451

Query: 769 GGHVSISS 776
           GG V + S
Sbjct: 452 GGDVEMHS 459


>gi|108810018|ref|YP_653934.1| two-component sensor/regulator [Yersinia pestis Antiqua]
 gi|108813573|ref|YP_649340.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|145600962|ref|YP_001165038.1| two-component sensor/regulator [Yersinia pestis Pestoides F]
 gi|150260697|ref|ZP_01917425.1| two-component sensor/regulator [Yersinia pestis CA88-4125]
 gi|165936543|ref|ZP_02225111.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010515|ref|ZP_02231413.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213929|ref|ZP_02239964.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167426128|ref|ZP_02317881.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167469426|ref|ZP_02334130.1| two-component sensor/regulator [Yersinia pestis FV-1]
 gi|218927461|ref|YP_002345336.1| two-component sensor/regulator [Yersinia pestis CO92]
 gi|229836507|ref|ZP_04456673.1| two-component sensor/regulator [Yersinia pestis Pestoides A]
 gi|229840116|ref|ZP_04460275.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842197|ref|ZP_04462352.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904062|ref|ZP_04519175.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|270488949|ref|ZP_06206023.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294502331|ref|YP_003566393.1| two-component sensor/regulator [Yersinia pestis Z176003]
 gi|108777221|gb|ABG19740.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|108781931|gb|ABG15989.1| two-component sensor/regulator [Yersinia pestis Antiqua]
 gi|115346072|emb|CAL18940.1| two-component sensor/regulator [Yersinia pestis CO92]
 gi|145212658|gb|ABP42065.1| two-component sensor/regulator [Yersinia pestis Pestoides F]
 gi|149290105|gb|EDM40182.1| two-component sensor/regulator [Yersinia pestis CA88-4125]
 gi|165915659|gb|EDR34268.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165990605|gb|EDR42906.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204904|gb|EDR49384.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167054839|gb|EDR64641.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229679832|gb|EEO75935.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|229690507|gb|EEO82561.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696482|gb|EEO86529.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706191|gb|EEO92199.1| two-component sensor/regulator [Yersinia pestis Pestoides A]
 gi|262360411|gb|ACY57132.1| two-component sensor/regulator [Yersinia pestis D106004]
 gi|262364361|gb|ACY60918.1| two-component sensor/regulator [Yersinia pestis D182038]
 gi|270337453|gb|EFA48230.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294352790|gb|ADE63131.1| two-component sensor/regulator [Yersinia pestis Z176003]
 gi|320013880|gb|ADV97451.1| two-component sensor/regulator [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 939

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E   A  +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L++ Q +  E  
Sbjct: 383 ALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTP---LDAGQMRLAETA 439

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
              S  LL ++N++LD + +++G M L+     L  LL++   +I ++    ++ +   I
Sbjct: 440 HQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFI 499

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S         D  RL QI   +L NA+ F+ +G  + L+  R N    F+V++ G  I  
Sbjct: 500 SANIPLELELDTLRLRQILVNLLGNAVKFTPQGR-IQLRVRRQNQTLCFTVEDTGCGIDV 558

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +++F  F+  +   Q  G GLGL+I ++   + GGH+++ S
Sbjct: 559 QHQQTIFQPFMQTSDHEQ--GTGLGLAIADNLAKMMGGHLTVFS 600


>gi|311278255|ref|YP_003940486.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747450|gb|ADO47202.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 915

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN  Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTD----LNPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQVEVQIRDTGIGIPESDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHS 504


>gi|269960026|ref|ZP_06174403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835325|gb|EEZ89407.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1187

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +    A++ K+SF+ ++S+E+R+P+  IIG + L+  S+L   N  Q  Y+E + 
Sbjct: 469 LQEARDDAESANQAKSSFLANMSHEIRTPMNAIIGMSHLVLESEL---NKHQKNYIEKVH 525

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL L+NDILD + V+AG ++L  +   L++LL++    ++ K  + ++ + +  D
Sbjct: 526 RSAKSLLRLLNDILDFSKVEAGKLELERTPFSLDELLDQAIDILSVKSQDKSLDLLLSVD 585

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSS 729
             L  + + D  R+ QI   +  NA+ F+ +G       +L   +        V++ G  
Sbjct: 586 QNLPQTLIGDPYRVKQIILNLGFNAIKFTHQGKVTLRLNLLHKTKQYSTLELVVEDEGIG 645

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +       +FN F        R+  G GLGL+I ++ I+L  G +S++S+
Sbjct: 646 MTPGQLNKLFNSFSQADTSTTRKYGGSGLGLAITKNIIDLMKGTISVTST 695


>gi|229094988|ref|ZP_04225985.1| hypothetical protein bcere0020_2470 [Bacillus cereus Rock3-29]
 gi|229101089|ref|ZP_04231856.1| hypothetical protein bcere0019_2770 [Bacillus cereus Rock3-28]
 gi|229113941|ref|ZP_04243368.1| hypothetical protein bcere0017_2480 [Bacillus cereus Rock1-3]
 gi|228669515|gb|EEL24930.1| hypothetical protein bcere0017_2480 [Bacillus cereus Rock1-3]
 gi|228682332|gb|EEL36442.1| hypothetical protein bcere0019_2770 [Bacillus cereus Rock3-28]
 gi|228688432|gb|EEL42313.1| hypothetical protein bcere0020_2470 [Bacillus cereus Rock3-29]
          Length = 281

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 116/229 (50%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ +E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 47  KRYEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 105

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  E       ++ ++NI ++V+        +A
Sbjct: 106 LVDEIFNMAKLDANEFPLKEEELDFSEVTREALIDFLPELSKHNIELQVLIPESTCPIIA 165

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   L++I   ++ NA+ +   G TV ++    N ++   + + G  IP+   +++F R 
Sbjct: 166 DHLSLMRIIGNLIKNAIYYGKDGKTVGIELLETNTEYELLIWDKGPGIPKHDLQNIFERM 225

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +      G GLGLSI ++ +  +GGH+ + S     TT    IP
Sbjct: 226 YRSEQSRTSSFGGSGLGLSISKALVERNGGHIWVESIPWKRTTFGFSIP 274


>gi|330821125|ref|YP_004349987.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           gladioli BSR3]
 gi|327373120|gb|AEA64475.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           gladioli BSR3]
          Length = 677

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 25/248 (10%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +VT  + AE++L E       AD  K++F+  +++ELR+PL  I          +  
Sbjct: 286 TLADVTRRMLAEQSLQE-------ADRKKDAFLATLAHELRNPLAPI----------RTA 328

Query: 601 SLNSKQSQYVEYISASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +   ++ Q VE     S I      L  L++D+LD++ +  G ++L   T+ L   + + 
Sbjct: 329 AAIIRKQQTVEGDEVHSIIERQCAHLARLIDDLLDVSRIGTGKIRLQRGTMDLRQAIRDA 388

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +    K  E+   I +    +      D  RL+QIFS +L NA+ +S  G  V L A  
Sbjct: 389 VEINLPKAREHGQAIDLSLPDEPVWVDGDSTRLIQIFSNLLDNALKYSDDGKRVRLAAGV 448

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                   V + G  IP  +  S+F  +V  + A    R G+G+GLS+V + +++HGG V
Sbjct: 449 SQQVVQIVVADQGMGIPTSLLASLFEPYVQLAPASSRARSGLGIGLSVVRNLVDMHGGRV 508

Query: 773 SISSSDEG 780
           S  S  EG
Sbjct: 509 SALSEGEG 516


>gi|326801308|ref|YP_004319127.1| histidine kinase [Sphingobacterium sp. 21]
 gi|326552072|gb|ADZ80457.1| histidine kinase [Sphingobacterium sp. 21]
          Length = 1337

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 132/249 (53%), Gaps = 22/249 (8%)

Query: 555  LTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            L ++ EA +++   D  K  F  ++S+E R+PL+ I+   D L   KL   N  Q   ++
Sbjct: 813  LQQEREAFKQSVELDRTKTQFFTNISHEFRTPLSLILAPIDRLLDEKL---NEGQKTQLQ 869

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH---ENNIR 668
             +  ++  LLNLVN +LDL  VD+  +K++   + L D+++ +++ + + M      +I 
Sbjct: 870  TMKRNAKRLLNLVNQLLDLKKVDSNKLKID---LTLGDIISHIREHVDSFMDLAAVKHIT 926

Query: 669  IKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFS 722
            +  IS+   GSF A  D++++ +I   +LSNA+ F+ K   V     +K A ++     +
Sbjct: 927  LSFISNK--GSFYAYFDQEKIERITFNLLSNALKFTDKNGKVEVILTVKDAANSHYLEIN 984

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            VK+ G  IP D  + +F R+  +        +G G+GLSI   ++ L GG ++++S +  
Sbjct: 985  VKDTGIGIPADQQEKIFERYFQHVDTKNFYNQGNGIGLSITHDYVQLLGGTITLNSQENV 1044

Query: 781  VTTINCRIP 789
             +T    +P
Sbjct: 1045 GSTFTIDLP 1053


>gi|323486812|ref|ZP_08092130.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum
           WAL-14163]
 gi|323399825|gb|EGA92205.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum
           WAL-14163]
          Length = 1032

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 119/225 (52%), Gaps = 15/225 (6%)

Query: 564 KADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTI 619
           +AD +   K  F+  +S+E+R+P+  I+G T + +++   + N +Q  + +E +  SS  
Sbjct: 644 RADAVSQAKTDFLSRMSHEIRTPMNAIVGMTAIARSA---AGNKEQVLECLEKLDNSSKY 700

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+LVNDILD++ +++G M+LN + ++L+  L+ + + +  +     +   + +D +   
Sbjct: 701 LLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSIDEMVRMQTEAKGLSFTIQNDCRTER 760

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNG-DFIFSVKNNGSSIPED 733
              AD+ RL Q+   ++ NA+ F+  G ++ L        D G    FS+ + G  I  +
Sbjct: 761 HLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHPVKEEDTGLALRFSLADTGIGISPE 820

Query: 734 MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  S+FN F   A     Q  G GLGL+I    + + GG + + S
Sbjct: 821 VLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQMMGGVLDVKS 865


>gi|312886915|ref|ZP_07746520.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311300599|gb|EFQ77663.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 766

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 125/241 (51%), Gaps = 13/241 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  + + AL +  E   +A  IK+ F+  +S+E+R+P+  +IGFT+LL    L +   
Sbjct: 371 ITEKKQIQEALIKAKEDAEQAALIKSRFLSIMSHEIRTPMNGVIGFTNLL----LKNPRE 426

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + +  +  S+  L+ ++ND+L+L  +DAG ++L   +  L +LL  + +S      E
Sbjct: 427 DQREALNVLKFSAQNLMVIINDVLNLNKIDAGKVELENISFDLYELLQNICRSQENDAKE 486

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719
            ++ + V  D  L   F  D  R+ Q+ + +++NA+ F++ G    ST ++         
Sbjct: 487 KHLNLSVQFDYSLPFWFKGDPVRIGQVITNLVNNAIKFTAAGRVSISTALVGEHEGKMTI 546

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            F+V + G  IPE   + +F  F S A     R   G GLGL+I +  + L G ++ + S
Sbjct: 547 GFAVSDTGIGIPETKQEHIFELF-SQAESDTTRIYGGTGLGLTITKRLLELMGSNIQLKS 605

Query: 777 S 777
           +
Sbjct: 606 T 606


>gi|311748275|ref|ZP_07722060.1| sensor histidine kinase [Algoriphagus sp. PR1]
 gi|126576770|gb|EAZ81018.1| sensor histidine kinase [Algoriphagus sp. PR1]
          Length = 391

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSLNSKQSQ 608
           A + LT+  E  R+ +E+K+  V +VS+  ++PLT+I+    LL+    +      K S+
Sbjct: 150 ANKELTKALEKEREINELKSRIVLNVSHGFKTPLTSILSSAQLLQIYAERDHPFKVKISK 209

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +   I  S   L NL+  +L     DA  ++     + +   + EV  ++   + EN + 
Sbjct: 210 HASKIENSVRALNNLLTSVLFFGKADADKVEYKPKKMFVGAFVKEVLDTVRAGI-ENKVT 268

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           IKV       + V+D + L Q+F  +LSN++ +S  G  V       +G  + S  + G 
Sbjct: 269 IKVSLGSLPKTVVSDSELLYQVFENLLSNSVKYSKDGQVVNFTLDYVDGKLVGSFTDYGI 328

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP+     +F+RF    + G R G GLGLSIV+  + + GG ++  S +   TT    I
Sbjct: 329 GIPKKEQSQLFDRFFRAHNVGIREGSGLGLSIVKKCVEVLGGEITFESEENKGTTFYVSI 388

Query: 789 PSK 791
           P K
Sbjct: 389 PVK 391


>gi|320156372|ref|YP_004188751.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319931684|gb|ADV86548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 569

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 139/273 (50%), Gaps = 18/273 (6%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I + N + +   V +       R L    E   +A+  K+ F+  +S+ELR+PL
Sbjct: 171 LIERAVIDIENKEKLQRIVELRT-----RELALAREESERANRAKSEFLAMMSHELRTPL 225

Query: 585 TNIIGFTDLLKTSKL--GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            +++G  D+LK S +  G +N      + ++ +S+ +LL +++DILDL+ +++G   L+ 
Sbjct: 226 NSVLGMLDVLKQSDMSAGHIN-----LLSHMESSAGLLLAIISDILDLSKIESGEFSLSP 280

Query: 643 STIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
             I +ND +  V  +Q +       NI + +  D K   ++ D  RL Q+   ++ NA+ 
Sbjct: 281 QWININDTVTFVVSQQQLVAATKGLNIELSIELDDKRHYWL-DPSRLSQVLFNLIGNAVK 339

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F+ +G  + ++   +N +   SV + G  I +D   S+F  F        R+  G GLGL
Sbjct: 340 FTQQGQ-IDIRVNLENDELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGL 398

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I +  + L  G V +SS     +T   +IP K
Sbjct: 399 AITKHLVELMSGTVRVSSQFGKGSTFVVKIPVK 431


>gi|300867853|ref|ZP_07112495.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334184|emb|CBN57671.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1145

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 132/284 (46%), Gaps = 40/284 (14%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGS 601
            +++D    E  L    EA   A   K+SF+ ++S+ELR+PL  IIG++++L+  T  LG 
Sbjct: 860  DISDRKHFESVLQLAKEAAEAASMAKSSFLANMSHELRTPLNAIIGYSEMLQEETEDLGY 919

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               + +  +  I  S   LL+L+NDILD++ ++AG M L   T  ++DL+++V  +    
Sbjct: 920  --QELTPDLHKIHISGKHLLSLINDILDISKIEAGRMDLYLETFSVDDLIDDVAATAKPL 977

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
              +N   ++VI +  + +  AD  ++ QI   +LSNA  F+  G  + L  +R+      
Sbjct: 978  AEKNGNILEVIKNSDIDTMHADITKVRQILLNLLSNAAKFTHNGK-ITLAVSREIAAIDA 1036

Query: 719  ------------------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
                                           IF+  + G  +  +  + +F  F      
Sbjct: 1037 EESMTTAEVIIDNQSNINNNNSSAISNFECLIFNCTDTGIGMTSEQLQQIFQPFTQGDAS 1096

Query: 749  GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              R+  G GLGL+I   F  + GG +++ S     +T + ++P+
Sbjct: 1097 TTRKYGGTGLGLAISHCFCQMMGGKIAVESQIGIGSTFSVKLPA 1140


>gi|296501720|ref|YP_003663420.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296322772|gb|ADH05700.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 896

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|296501092|ref|YP_003662792.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296322144|gb|ADH05072.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 337

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 103 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 161

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI +++         +A
Sbjct: 162 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQIRIPESTCPIIA 221

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   +++I   ++ NA+ +   G T+ ++    + ++   + + G  IP+   ++VF R 
Sbjct: 222 DHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDLQNVFERM 281

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    TT    IP
Sbjct: 282 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIP 330


>gi|228988115|ref|ZP_04148214.1| hypothetical protein bthur0001_47750 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771613|gb|EEM20080.1| hypothetical protein bthur0001_47750 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 357

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 130/245 (53%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  + +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 113 ASEKLKEAVERGDFAESSKDQLIVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 172

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++ L+   I +++LL ++ + +   + ++++  
Sbjct: 173 IAY--TKSQRLESLIDELFEITRMNYGMLNLDKKPIDISELLIQLDEELYPLLEKHHLEA 230

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V LK   DNG+ +  V N G S
Sbjct: 231 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLKGYIDNGEVVIQVMNYGDS 289

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F + +  R + R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 290 IPEEDLPYLFDMFYTGDKSRSENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTVFEVR 348

Query: 788 IPSKE 792
           +P +E
Sbjct: 349 LPKEE 353


>gi|255039054|ref|YP_003089675.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254951810|gb|ACT96510.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 421

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 126/243 (51%), Gaps = 12/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RALT++    R+ + +K+ FV   S+E R+PL  I+    L+          K+ ++V+ 
Sbjct: 182 RALTKE----RELNNMKSQFVTIASHEFRTPLATILSSASLIGRYARTEDEEKRQKHVQR 237

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH---ENNIRI 669
           I ++ T L  ++ND L +  ++ G +   ++  VL DL NE  +++  ++    +   ++
Sbjct: 238 IKSTVTNLTEILNDFLSIGKLEEGRI---HAIPVLTDL-NEFCKNLIEEIKGLCKEGQQM 293

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +G+  +++ D+Q L  +   +LSNA+ +S  G ++ L+     G     V++ G  
Sbjct: 294 NFTYEGEAHAWL-DKQLLRNVLFNLLSNAIKYSEMGKSIFLRIKNWGGLIRIEVQDQGIG 352

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IPE     +F+RF    + G  +G GLGL+IV+++I L GG V   S     TT    +P
Sbjct: 353 IPEKDQGHIFDRFFRAHNAGNAQGTGLGLNIVQNYIELMGGTVRFQSEVNTGTTFFVELP 412

Query: 790 SKE 792
           ++E
Sbjct: 413 NRE 415


>gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
 gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
          Length = 919

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L   S+L   N  Q  ++  I  S+  LL 
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSEL---NPTQRDHLHTIERSANNLLT 343

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I +    + +
Sbjct: 344 IINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVI 403

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCKS 737
            D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE     
Sbjct: 404 GDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTGIGIPERDQSR 463

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 464 LFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHS 504


>gi|218890756|ref|YP_002439620.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218770979|emb|CAW26744.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 741

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M  ++++T+  R  R L    EA+R+ADE    K+ F+  +S+E+R+P+  +IG  +L+ 
Sbjct: 218 MNGWIDITERERLARQL---REAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL 274

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    + S  V Y +A S  L  L+ DILD+A +++G + L    + L  ++  V+
Sbjct: 275 QRLAPEQRERASLEVAYEAAGSLQL--LIGDILDVAKIESGHLTLTPERVRLRHVVESVR 332

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       +  +R+ V  D   G  V  D  R  Q+ S ++SNA+ F+ +G   I    R
Sbjct: 333 RMFEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERGQVTIRLQER 392

Query: 715 --DNGDFIFSVKNNGSSI---PEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
             D G  I  V    S I   P D  + +F  F+  A  R  + G GLGL+I    ++L 
Sbjct: 393 SLDEGRAIVRVDVEDSGIGIAPADQAR-LFQPFIQVAKGRTVQGGTGLGLAICRKLVDLM 451

Query: 769 GGHVSISS 776
           GG V + S
Sbjct: 452 GGDVEMHS 459


>gi|166713792|ref|ZP_02244999.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 746

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 71  EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 127

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             ++SS  LL +V+DILD + ++A  ++L  +T  L +LLN V Q +        +R+ +
Sbjct: 128 TATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLNGVVQLLQRTAEGRQLRLSL 187

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 188 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 247

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 248 GIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 307

Query: 785 NCRIP 789
              IP
Sbjct: 308 WFEIP 312


>gi|119509764|ref|ZP_01628909.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
 gi|119465630|gb|EAW46522.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
          Length = 1389

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+  +S+ELR+PL +++G++ LL+  +       +   +  I  S+    +L+ D+L
Sbjct: 1007 KDEFLSILSHELRNPLNSMLGWSKLLQKKQFDQATINKG--LAAIERSAQAQAHLIKDLL 1064

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            D++ + AG ++++   + L  ++    + +       NI+I+        S V D  RL 
Sbjct: 1065 DISRISAGRLRIDAQKLDLVSVIESAMEVVRFSAEAKNIQIESNLAPAPRSMVGDANRLQ 1124

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK--NNGSSIPEDMCKSVFNRF--VS 744
            Q+F  +LSNA+ F+  G  V +  + D  DF   ++  + G  I  D    VF RF    
Sbjct: 1125 QVFWNLLSNAIKFTPSGGKVTI--SLDYTDFQAQIQISDTGYGISADFLPHVFERFRQAD 1182

Query: 745  NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
             +      G+GLGLSIV   + LHGG +   S  EG   T   R+P
Sbjct: 1183 GSRTRSNPGLGLGLSIVRYLVELHGGTIDAESQGEGQGATFTVRLP 1228


>gi|148654653|ref|YP_001274858.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148566763|gb|ABQ88908.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 1017

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 167/357 (46%), Gaps = 53/357 (14%)

Query: 445  EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL--FAA 502
            EG+ +   DG + ++N A   L   + + +    H   I A  SR++ E+  ++    AA
Sbjct: 673  EGILLIDTDGTVAVANAALSDLTTLDASII----HGLPIDAFLSRWF-EAAAYETEECAA 727

Query: 503  IITSFDDERKSLQGTLELLSDSV---------LEYSIIPLPNAQT--------MLTFVNV 545
            +    DD    L GT + ++  +         LE+S++    AQ+        +L   ++
Sbjct: 728  LQRGIDD---VLTGTAQFVAGELSGRSGQLRHLEWSVL---RAQSSGDSHGGVLLVLRDI 781

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            T +  AER              +++     + ++LRSPL+ ++   +L+     G LN +
Sbjct: 782  TATKEAER--------------MRHDLTHMIVHDLRSPLSGVMASIELMMRGVPGKLNDQ 827

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q   ++  S S+  +L+++N +LD++ ++AG M +      + D++++  Q +A+   + 
Sbjct: 828  QRHVLQIASTSAANMLDMINTLLDISRLEAGRMPIERCIGNIRDIIHDSVQRLASLALDR 887

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720
             I I+   +  +    AD   + +I   ++SNA+ FS +G  V ++AA +  D      I
Sbjct: 888  AITIRTEVEEDVPDIYADLGLISRIIQNLVSNAIKFSHRGGLVTVRAAVETADDGQPKVI 947

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
             SV + G  I     + +F +F   +  G+RR G GLGL+     I  HG  + ++S
Sbjct: 948  VSVSDQGVGIAPGDRERIFAKF---SQVGERRGGTGLGLAFCRQAIEAHGERIWVNS 1001


>gi|119944301|ref|YP_941981.1| hybrid sensory histidine kinase BarA [Psychromonas ingrahamii 37]
 gi|119862905|gb|ABM02382.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 926

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 16/232 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  +K+ F+ ++S+ELR+PL  +IGF   LLKT     L + Q  Y++ I  S+  LL
Sbjct: 285 QQAALVKSEFLANMSHELRTPLNGVIGFARQLLKTQ----LTTNQIDYLQTIERSAGNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG   L +    L D ++E    +A   HE N+ + +I D ++   V
Sbjct: 341 KIINDILDFSKLEAGKFTLEHIPFDLRDCIDETMHLLAPSAHEKNLELSLIVDPEVPYEV 400

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNG-DFIFSVKNNGSSIPED 733
             D  RL QI + ++ NA+ F+ KG   I       +  RDN       + ++G  I + 
Sbjct: 401 FGDAMRLQQILTNLIGNAIKFTEKGDIKIQIQRIEEQTNRDNKVTLKIMISDSGIGISKK 460

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
               +F  F     +   Q  G GLGL I +  +    G +  IS  ++G T
Sbjct: 461 QQAQLFKAFGQADTSITRQYGGTGLGLVITQKLVKEMQGRIELISIPEQGST 512


>gi|15598240|ref|NP_251734.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9949149|gb|AAG06432.1|AE004729_6 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 741

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M  ++++T+  R  R L    EA+R+ADE    K+ F+  +S+E+R+P+  +IG  +L+ 
Sbjct: 218 MNGWIDITERERLARQL---REAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL 274

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    + S  V Y +A S  L  L+ DILD+A +++G + L    + L  ++  V+
Sbjct: 275 QRLAPEQRERASLEVAYEAAGSLQL--LIGDILDVAKIESGHLTLTPERVRLRHVVESVR 332

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       +  +R+ V  D   G  V  D  R  Q+ S ++SNA+ F+ +G   I    R
Sbjct: 333 RMFEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERGQVTIRLQER 392

Query: 715 --DNGDFIFSVKNNGSSI---PEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
             D G  I  V    S I   P D  + +F  F+  A  R  + G GLGL+I    ++L 
Sbjct: 393 SLDEGRAIVRVDVEDSGIGIAPADQAR-LFQPFIQVAKGRTVQGGTGLGLAICRKLVDLM 451

Query: 769 GGHVSISS 776
           GG V + S
Sbjct: 452 GGDVEMHS 459


>gi|88857165|ref|ZP_01131808.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2]
 gi|88820362|gb|EAR30174.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2]
          Length = 781

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 21/258 (8%)

Query: 540 LTFVNVTDSV----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           LTFV +   +    + E+ L +   +   A   K++F+ + S+E+R+P+  I G   LL+
Sbjct: 383 LTFVGIISDISHIKQREKELQDAKNSAESAALAKSAFLANTSHEIRTPMNGIYGILQLLE 442

Query: 596 TSKL---GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
              L   G    KQ+ Y      S+  L+ +VNDILD + ++AG + L ++   ++ LL 
Sbjct: 443 CEPLTQNGQNLLKQATY------STQALMTIVNDILDFSKIEAGKLNLEHTHFKVSALLA 496

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LK 711
            ++  ++ +  + NI +K+ +      +  D  R+ QI   I+SNA+ F+ +G  VI   
Sbjct: 497 HLESDMSLQTKDKNITLKIHNTITHDDWYGDALRIRQILINIISNAIKFTQQGGIVISCY 556

Query: 712 AARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
             + N   I    F + + G  + +     +F RF    +   RR  G GLG+SIV S  
Sbjct: 557 CNQANNASINQVTFEITDTGIGMSKMALDKLFERFEQADNSTTRRFGGTGLGMSIVHSLT 616

Query: 766 NLHGGHVSISSSDEGVTT 783
            L  G +++  S+EGV T
Sbjct: 617 TLMEGKINV-QSEEGVGT 633


>gi|307266331|ref|ZP_07547870.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918638|gb|EFN48873.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 568

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 134/270 (49%), Gaps = 14/270 (5%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + VL  +I PL + Q +  +V V   +  +  L    +A+RK       FV +VS+ELR
Sbjct: 309 GNKVLTVNIAPLKSNQQIEGYVYVLHDITEQHKL----DAMRK------EFVANVSHELR 358

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I  + + L  S + +   K+  +++ I + +  +  LV D+L L+ +D+    L 
Sbjct: 359 TPLATIKSYVETLLYSDVDAEYLKR--FLKIIDSETDRMTRLVKDLLLLSKMDSEDKNLK 416

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +    LN+++ +V   ++ + H+ N ++ V           D+ ++ Q+   +++NA+ +
Sbjct: 417 FEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQETPRHVYIDKDKMEQVIVNLVTNAIKY 476

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           + +   + +    D     F V++NG  IP++    +F RF  V  A   +  G GLGLS
Sbjct: 477 TPENGMIKVMTEYDENFATFIVEDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLS 536

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IV+  + LH G V+I S     T +  ++P
Sbjct: 537 IVKQIVELHKGEVNIESEVGKGTIVRVKLP 566


>gi|300869576|ref|ZP_07114157.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
 gi|300332444|emb|CBN59357.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
          Length = 947

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 11/180 (6%)

Query: 544 NVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++TD  +AE+       +L E  +A   A   K+ F+ ++S+E+R+P+  +IG T LL  
Sbjct: 747 DITDRKQAEQQRSELIASLQEARDAAEAATRAKSEFLANMSHEIRTPMNAVIGMTSLLLD 806

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L  +Q  +VE +  S   LL L+NDILD + ++AG ++L      L D +     
Sbjct: 807 T---PLTPEQRDFVETVRTSGDALLALINDILDFSKIEAGKLELEEQPFDLRDCIEASLD 863

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +A K  E  + +  I DG + S  V D  RL QI   +LSNA+ F++KG  V+   AR+
Sbjct: 864 LLAPKAAEKGLDLAYIIDGDVPSTIVGDISRLRQILVNLLSNAVKFTAKGEVVVSVTARN 923


>gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1351

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 21/242 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+E  +    A   K+ F+  +S+E+R+P+  +IG T LL  + L  +   Q  +VE I 
Sbjct: 656 LSEARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLV---QQDFVETIR 712

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS  LL+L+NDILD + +++G + L      L   L E    +ATK    ++ +    D
Sbjct: 713 SSSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFID 772

Query: 675 G-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------NGDFIFS---- 722
                  V D  R+ QI   +LSNA+ F+++G  ++  +A+            ++S    
Sbjct: 773 AYTPNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSVSAKPLFSDLELTAKSMYSTHYQ 832

Query: 723 ----VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V + G  IP D    +F  F  V  +   Q  G GLGL+I +    + GG + + S
Sbjct: 833 IEVAVSDTGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVS 892

Query: 777 SD 778
            D
Sbjct: 893 GD 894


>gi|149197352|ref|ZP_01874403.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
           HTCC2155]
 gi|149139370|gb|EDM27772.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
           HTCC2155]
          Length = 1182

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S +  + L E+ EA   A+  K+ F+ ++S+E+R+P+  IIG   L    K G    K  
Sbjct: 539 SNKQSQELKEEAEA---ANTAKSEFLANMSHEIRTPMNAIIGLAQLGLKDKSGE---KHE 592

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I  SS  LL ++NDILD + ++AG M +      LN++L +V  ++  +M   N+
Sbjct: 593 EYLYKIKQSSENLLTIINDILDFSKIEAGKMTMEKIPFKLNEVLEKVGGTLRGRMTNRNV 652

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
            +  I  G L    V D  RL Q+   +L NA+ ++ KG  ++     +   D+    FS
Sbjct: 653 DL--IFPGPLSYKLVGDPLRLEQVLLNLLGNALKYTRKGHVILSVDEKELKEDSICLQFS 710

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           V++ G  + +     +F  F        R+  G GLGLSI +  +   GG + + S
Sbjct: 711 VEDTGIGLSDTQRNRLFQPFAQGDTSTTRKYGGTGLGLSISKKIVKYMGGEIWLDS 766


>gi|37679852|ref|NP_934461.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198597|dbj|BAC94432.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 569

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 139/273 (50%), Gaps = 18/273 (6%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I + N + +   V +       R L    E   +A+  K+ F+  +S+ELR+PL
Sbjct: 171 LIERAVIDIENKEKLQRIVELRT-----RELALAREESERANRAKSEFLAMMSHELRTPL 225

Query: 585 TNIIGFTDLLKTSKL--GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            +++G  D+LK S +  G +N      + ++ +S+ +LL +++DILDL+ +++G   L+ 
Sbjct: 226 NSVLGMLDVLKQSDMSAGHIN-----LLSHMESSAGLLLAIISDILDLSKIESGEFSLSP 280

Query: 643 STIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
             I +ND +  V  +Q +       NI + +  D K   ++ D  RL Q+   ++ NA+ 
Sbjct: 281 QWININDTVTFVVSQQQLVAATKGLNIELSIELDDKRHYWL-DPSRLSQVLFNLIGNAVK 339

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F+ +G  + ++   +N +   SV + G  I +D   S+F  F        R+  G GLGL
Sbjct: 340 FTQQGQ-IDIRVNLENDELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGL 398

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I +  + L  G V +SS     +T   +IP K
Sbjct: 399 AITKHLVELMSGTVRVSSQFGKGSTFVVKIPVK 431


>gi|2707334|gb|AAC99477.1| putative ethylene receptor [Cucumis melo]
 gi|10280984|dbj|BAB13735.1| Cm-ERS1 [Cucumis melo var. cantalupensis]
 gi|162138860|dbj|BAF95187.1| ethylene receptor [Cucumis melo var. cantalupensis]
          Length = 637

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 34/269 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L ++N AL    R+A+     +N F+  +++E+R+P+  II  +        
Sbjct: 317 ESMRARDQLVDQNVALDLARREAETAIHARNDFLAVMNHEMRTPMHAIIALS---SLLLE 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E I  SS +L  L+ND+LDL+ ++ G + L+  +  L+ +  E    I 
Sbjct: 374 TELTPEQRVMIETILKSSNLLATLINDVLDLSRLEDGSLVLDMGSFNLHAIFKEALDLIK 433

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKA 712
                  + + +I    L    V D +RL+QI   I+ N + F+ +G   I      L +
Sbjct: 434 PIASVKKLSMALILASDLPICAVGDEKRLMQIILNIVGNGVKFTKEGHVSIIASIAKLDS 493

Query: 713 ARD-----------NGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            RD           +G F     VK++G  IP      +F RF     R  +   GVGLG
Sbjct: 494 LRDWRPTEFYPMQSDGQFYLRVQVKDSGCGIPPQDIPHLFTRFTQLQTRSNKTNSGVGLG 553

Query: 758 LSIVESFINLHGGHVSISS--SDEGVTTI 784
           L++ + FINL GGH+ I S   D+G T +
Sbjct: 554 LALCKRFINLMGGHIWIESEGPDKGTTAM 582


>gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 800

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 134/260 (51%), Gaps = 17/260 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  + ++ L  + + L+ + + K+ F+ ++S+ELR+PL +I+  +++L  +K  +L+ ++
Sbjct: 374 DLQQTKKELELQTKQLQASSQYKSEFLANMSHELRTPLNSILILSEMLLENKNETLSEEE 433

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++   I ++ T LL L+ND+LDL+ ++A  +++    + + +L  ++++       +  
Sbjct: 434 QEFAHIIYSAGTDLLGLINDVLDLSKIEAKKLEMICGEMSIQELCTQLERHFTPIAQQKQ 493

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------- 718
           I  +++    +   F  D +RL QI   +LSNA  F+ +GS VI++  +   +       
Sbjct: 494 IDFQILLQKPVPDLFYTDEKRLQQIIKNMLSNAFKFTEQGS-VIMQVEQMQKEQMTVEME 552

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
                  + + ++ G  I E+  + +F+ F     A   +  G GLGLSI +  + L GG
Sbjct: 553 KKSDTWLVITCQDTGIGISEEQQQLIFDAFHQADGAIARKYGGTGLGLSISKELVTLLGG 612

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +++ S     +     IP+
Sbjct: 613 SITVHSIQGKGSIFTVYIPN 632


>gi|229108572|ref|ZP_04238184.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
 gi|228674827|gb|EEL30059.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
          Length = 896

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|170758421|ref|YP_001787843.1| putative phosphate regulon sensor protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405410|gb|ACA53821.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 569

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF++ LK          + ++++ I+  +  L 
Sbjct: 340 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 396

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL L+ ++    +L    I LN+L+ +V   +     + NIRI ++ + K+   +
Sbjct: 397 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLI 455

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            ++ +  Q+   ++ NA+ ++     V +   +D G+ +F V++ G  I E+    +F R
Sbjct: 456 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLYRIFER 515

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +    G + + S  +  T    +IP
Sbjct: 516 FYRVDKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKRGTKFIVKIP 565


>gi|297582643|ref|YP_003698423.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141100|gb|ADH97857.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 469

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 26/254 (10%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E A+ +  + L K  + +N F+  +++EL++PLT + G+ D+ K +  G   + +++Y+ 
Sbjct: 219 ELAIRQLAQDLEKVKQERNEFLAGIAHELKTPLTYVKGYADMAKRADTG--EADRARYLA 276

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN----- 666
            I   +  L  LV D+ DLA +D+    +   T+ L+D+L    + +A    E N     
Sbjct: 277 IIEEEAASLTRLVGDLFDLAKLDSNSFAIEKGTVDLSDVLRGFCRDLAPVAKERNRLLAG 336

Query: 667 -----IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFI 720
                IR+K           AD  RL+Q+   +  NA+ +S + S V +   R  +G  +
Sbjct: 337 DIEDRIRVK-----------ADECRLIQVLRNLTDNAIRYSDEDSAVTVSLTRAGDGRIL 385

Query: 721 FSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G+ I +     +F+R + ++  R +   G G+GLSIV++ ++ HG  +   S  
Sbjct: 386 LAVADEGAGIAKHHLPYLFDRLYRADPSRSRETGGSGIGLSIVKAIVDQHGWAIEAKSEV 445

Query: 779 EGVTTINCRIPSKE 792
              T +   IP  +
Sbjct: 446 NKGTVMTVTIPKGD 459


>gi|218234881|ref|YP_002365770.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
 gi|218162838|gb|ACK62830.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
          Length = 896

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|27365916|ref|NP_761444.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362065|gb|AAO10971.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 574

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 139/273 (50%), Gaps = 18/273 (6%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I + N + +   V +       R L    E   +A+  K+ F+  +S+ELR+PL
Sbjct: 176 LIERAVIDIENKEKLQRIVELRT-----RELALAREESERANRAKSEFLAMMSHELRTPL 230

Query: 585 TNIIGFTDLLKTSKL--GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            +++G  D+LK S +  G +N      + ++ +S+ +LL +++DILDL+ +++G   L+ 
Sbjct: 231 NSVLGMLDVLKQSDMSAGHIN-----LLSHMESSAGLLLAIISDILDLSKIESGEFSLSP 285

Query: 643 STIVLNDLLNEV--KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
             I +ND +  V  +Q +       NI + +  D K   ++ D  RL Q+   ++ NA+ 
Sbjct: 286 QWININDTVTFVVSQQQLVAATKGLNIELSIELDDKRHYWL-DPSRLSQVLFNLIGNAVK 344

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F+ +G  + ++   +N +   SV + G  I +D   S+F  F        R+  G GLGL
Sbjct: 345 FTQQGQ-IDIRVNLENDELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGL 403

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I +  + L  G V +SS     +T   +IP K
Sbjct: 404 AITKHLVELMSGTVRVSSQFGKGSTFVVKIPVK 436


>gi|30262551|ref|NP_844928.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47527849|ref|YP_019198.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185392|ref|YP_028644.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|118477955|ref|YP_895106.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|165868302|ref|ZP_02212962.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167632250|ref|ZP_02390577.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167637775|ref|ZP_02396054.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170685484|ref|ZP_02876708.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170704777|ref|ZP_02895243.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177649513|ref|ZP_02932515.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|196036702|ref|ZP_03104094.1| sensor histidine kinase [Bacillus cereus W]
 gi|218903689|ref|YP_002451523.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227814630|ref|YP_002814639.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229601454|ref|YP_002866874.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254685127|ref|ZP_05148987.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254722536|ref|ZP_05184324.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254737578|ref|ZP_05195281.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743239|ref|ZP_05200924.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254751893|ref|ZP_05203930.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254760413|ref|ZP_05212437.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|301054095|ref|YP_003792306.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|30257183|gb|AAP26414.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47502997|gb|AAT31673.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179319|gb|AAT54695.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|118417180|gb|ABK85599.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|164715028|gb|EDR20545.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167514324|gb|EDR89691.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167532548|gb|EDR95184.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170130578|gb|EDS99439.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170670844|gb|EDT21583.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172084587|gb|EDT69645.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|195990666|gb|EDX54642.1| sensor histidine kinase [Bacillus cereus W]
 gi|218537447|gb|ACK89845.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227003856|gb|ACP13599.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229265862|gb|ACQ47499.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|300376264|gb|ADK05168.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 385

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A  +N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGNDGDYIDITAYENNNMIAIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 375


>gi|317052669|ref|YP_004113785.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947753|gb|ADU67229.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 695

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 129/257 (50%), Gaps = 13/257 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+   AE  +    E  R  +++KN+F+Q VS+E R+PL  I+G  ++L+        
Sbjct: 440 DITELKEAEAQIRANLEEERSINKMKNTFIQTVSHEFRTPLAGIMGSAEILERYFERISE 499

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +++Q++  I      ++ ++ D+L L ++D+G    N   + L  L + +   +     
Sbjct: 500 EQRAQHLLSIRNGVKRMVAILEDVLILGSLDSGQTAFNPQPLNLVSLCHTIVTEMQQIYR 559

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF- 721
           +  I I     G++ + + AD + L  I + +LSNA+ +S     V L+ ++ + ++I  
Sbjct: 560 DREIHIDA---GQIPNNIDADAKLLRYIVTNLLSNALKYSPFEKPVHLQISQQHEEYIIV 616

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G  IPED  K++F  F   ++    +G GLGL IV+  + LHGG +  +S     
Sbjct: 617 CVRDEGIGIPEDEQKNMFQSFYRCSNTEGIKGTGLGLIIVQKCVFLHGGTIEFTSKAGQG 676

Query: 782 TTI--------NCRIPS 790
           T+          C IP+
Sbjct: 677 TSFYFYLPIHSRCHIPA 693


>gi|283479542|emb|CAY75458.1| sensor histidine kinase/response regulator [Erwinia pyrifoliae DSM
           12163]
          Length = 924

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 15/232 (6%)

Query: 556 TEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVE 611
            E + A R+A E   IK+ F+ ++S+ELR+PL  +IGFT   LKT     LNS Q  Y+ 
Sbjct: 292 VELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTM----LNSTQRDYLH 347

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +
Sbjct: 348 TIERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTL 407

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NN 726
            I      + + D  R+ QI   +L NA+ F+  G+  I   K A  N      V+  + 
Sbjct: 408 NIQSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDT 467

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I E     +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 468 GIGISEKQQSKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHS 519


>gi|229165251|ref|ZP_04293040.1| hypothetical protein bcere0007_2420 [Bacillus cereus AH621]
 gi|228618222|gb|EEK75258.1| hypothetical protein bcere0007_2420 [Bacillus cereus AH621]
          Length = 314

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 3/238 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +     RK+ E +   + ++S+++R+PLT+IIG+ D LK     S   KQ +Y+E +
Sbjct: 71  ALEKGQIEARKSQEARKQLLSNISHDIRTPLTSIIGYIDALKDDVAASEVEKQ-EYLEIL 129

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L +LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++V+ 
Sbjct: 130 YKKSNDLKHLVDEIFNMAKLDADEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLI 189

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  +AD   L++I   ++ NA+     G  V ++    N ++   + + G  IP+ 
Sbjct: 190 PESTSPIIADHLSLIRIIGNLIKNAIHHGKAGKIVGVELLETNTEYEILIWDKGPGIPKH 249

Query: 734 MCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++VF R + S   R     G GLGLSI ++ +  +GG + + S     TT    +P
Sbjct: 250 DLQNVFKRMYRSEQSRNPSYGGSGLGLSISKALVEKNGGRIWVDSIPWERTTFGFSVP 307


>gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2]
 gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2]
          Length = 918

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELNTTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L++V   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1407

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 12/222 (5%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K++F+ ++S+E+R+P+  IIG T LL+      +  +Q   +E I AS   LL L+NDIL
Sbjct: 784  KSAFLANMSHEIRTPMNAIIGLTHLLRKD---GVTPQQDGRLEQIEASGRHLLGLINDIL 840

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            DL+ ++AG + L      L+ +L+ V   I        + I++  D        D  RL 
Sbjct: 841  DLSKIEAGKLDLALEDFHLSAVLDHVASLIRPSAQSKGLHIELDGDAVPTWLRGDPMRLR 900

Query: 689  QIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            Q    +  NA+ F+ +GS V    +LK   +     F V++ G  +     + +F+ F  
Sbjct: 901  QCLFNLAGNAVKFTERGSIVLRAKLLKDGAEGLQVRFEVEDTGIGVTPAQGQRLFHVF-Q 959

Query: 745  NAHRGQRR---GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
             A  G  R   G GLGL++  +   + GG   + S   EG T
Sbjct: 960  QAEVGTTRKYGGTGLGLALTRNLAQMMGGEAGMDSIPGEGST 1001


>gi|224134496|ref|XP_002327419.1| ethylene receptor 4 [Populus trichocarpa]
 gi|222835973|gb|EEE74394.1| ethylene receptor 4 [Populus trichocarpa]
          Length = 737

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L ++N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMDQNVALDHARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDLGTFNLHALFREVLNLIK 431

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + + + ++       V D +RL+Q    ++ NA+ FS +GS  I       ++
Sbjct: 432 PIASVKKLHVTLNLAPDLPECVVGDEKRLMQTILNVVGNALKFSKEGSISITAFVAKSES 491

Query: 713 ARDN--GDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD+   DF              VK+ G  + P+++ K +F +F        R   G GL
Sbjct: 492 LRDSRAPDFFPVPSDDHFYLRVQVKDAGQGVNPQEIPK-LFTKFAQTQTLATRNSSGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 551 GLAICKRFVNLMEGHIWIESEGLG 574


>gi|207724848|ref|YP_002255245.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
 gi|206590073|emb|CAQ37034.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
          Length = 675

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 127/257 (49%), Gaps = 13/257 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +++T+  +AE   T+  EA  +A E       +K+ F+  VS+ELR+PL  ++G+  LL 
Sbjct: 265 IDITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLA 324

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    ++   +E I  S+   ++L++D+LD++ + +G + L    + L D+L   +
Sbjct: 325 MRPYDEAMFRRG--LEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           ++I     +  I I       +     D  RL Q+F  +L+NA+ F+ +G  + +     
Sbjct: 383 ETIEPMARQKQIAIDT-EYPPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQAL 441

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
               + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH G ++
Sbjct: 442 PEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRIT 501

Query: 774 ISSSDEGV-TTINCRIP 789
            +S+   + TT+   +P
Sbjct: 502 AASNGANLGTTMAVTLP 518


>gi|196036933|ref|ZP_03104315.1| putative sensor histidine kinase [Bacillus cereus W]
 gi|218901476|ref|YP_002449310.1| putative sensor histidine kinase [Bacillus cereus AH820]
 gi|195990456|gb|EDX54442.1| putative sensor histidine kinase [Bacillus cereus W]
 gi|218535839|gb|ACK88237.1| putative sensor histidine kinase [Bacillus cereus AH820]
          Length = 337

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 118/229 (51%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 103 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 161

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI+++V+        +A
Sbjct: 162 LVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPESTCPIIA 221

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   L++I   ++ NA+ +   G T+ ++    +  +   + + G  IP+   ++VF R 
Sbjct: 222 DHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDLQNVFERM 281

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +      G GLGLSI ++ +  +GGH+ + S     TT    IP
Sbjct: 282 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIP 330


>gi|162451219|ref|YP_001613586.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum
           'So ce 56']
 gi|161161801|emb|CAN93106.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum
           'So ce 56']
          Length = 498

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 115/221 (52%), Gaps = 10/221 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           LR+ + I+  FV +VS+ELR+P+T I   +   +T +LG+L      +++V+ I   +  
Sbjct: 268 LRRLETIRTDFVANVSHELRTPVTAI---STAAETLQLGALKDPHEAAEFVDVIDRHAKR 324

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +LV+D+LDL+ ++A   +L  S + +   +  V Q +A       + + V +   L  
Sbjct: 325 LRHLVDDLLDLSKIEAKNFRLALSELDIAPAIEHVTQLLAEAARRRRVTLTVDASA-LPP 383

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              DR+ L Q+   +L NA+ ++ +G+ V ++A   +     +V ++G  IP      +F
Sbjct: 384 VRCDRRALEQVLMNLLDNAIKYAGEGAHVTVRARSVDQQVTLAVADDGPGIPPHHLGRIF 443

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
            RF      G+ R   G GLGL+IV+  + L  G + + S+
Sbjct: 444 ERFY-RVDAGRSRDLGGTGLGLAIVKHLVELMNGSIEVESA 483


>gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1323

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 13/231 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + ++    A+  K++F+ ++S+E+R+P+  I+G T LLK     + +  Q   +E I 
Sbjct: 698 LAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRD---TPDHTQQDRLEKID 754

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL ++NDILDL+ +DAG M L  S   L  +L+ V   ++ +     + I ++  
Sbjct: 755 NAAQHLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNVSALMSEQARAKGLTI-IVDI 813

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFI--FSVKNNGS 728
           G   ++V  D  RL Q      +NA+ F+ +GS V L+   D+   G ++  F V++ G 
Sbjct: 814 GDTPAWVHGDITRLRQALLNYAANAIKFTEQGS-VTLRVRVDHPLAGGYLLRFEVEDTGI 872

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            I  +  + +F  F        R+  G GLGL+I      L GG V ++S+
Sbjct: 873 GISPEQSEKLFQAFEQADVSTTRKYGGTGLGLAITSRLATLMGGEVGVTST 923


>gi|7407123|gb|AAF61919.1|AF227742_1 ethylene receptor [Mangifera indica]
          Length = 739

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 127/264 (48%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L  +N AL +A          +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLVVQNIALDRARREAETAICARNDFLSVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  S  +L  L+ND+LDL+ ++ G ++L   T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSGNLLATLINDVLDLSRLEDGSLQLQLGTFNLHAVFKEVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  + V D +R +Q    ++ NA+ F+ +G+ +I         
Sbjct: 432 PIASVKKLLVALNLAPDLPEYAVGDEKRFMQTLLNVVGNAVKFTKEGNILITAFVAKSES 491

Query: 710 ---------LKAARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR--RGVGL 756
                         DN  ++   VK++GS I P+D+ K +F +F  N     R   G GL
Sbjct: 492 FLDSRTPEFFPVPSDNHFYLRVQVKDSGSGISPQDIPK-LFTKFAQNQSIATRNSHGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 551 GLAICKRFVNLMEGHIWIESEGLG 574


>gi|85704547|ref|ZP_01035649.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
 gi|85670955|gb|EAQ25814.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
          Length = 530

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ +  K   V  VS+ELR+PLT+I G   LL +  LG+ + K    ++    ++  LL 
Sbjct: 293 KQIERAKMESVSIVSHELRTPLTSIHGSLRLLDSGALGTFDPKAQSVLDIAVRNTDRLLL 352

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGKLGS 679
           +V+DILDL    AG M +    + L  L+    E+ +   + +H   +     +D +   
Sbjct: 353 VVDDILDLEKFRAGKMPIEKVHVDLVSLVGEAVEINKGYGSDLH---VSFAFETDLETAP 409

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
                +R++Q+ + +LSNA  +S    TV +    D   +  SV ++G  IPE+M  SVF
Sbjct: 410 IFVAPERMMQVLANLLSNAAKYSPTHGTVRVGLREDGRFWQISVADDGPGIPEEMRASVF 469

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F  + +     R+G GLG++I +  +  H G +   S     +T   R+P
Sbjct: 470 ESFSKLPSLDGVTRKGTGLGMTISQKIVQAHDGEIGFDSEVGNGSTFFIRLP 521


>gi|323485030|ref|ZP_08090383.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323401586|gb|EGA93931.1| sensor protein [Clostridium symbiosum WAL-14163]
          Length = 386

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 129/241 (53%), Gaps = 6/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L E+ +  ++A++ KN  V ++++++++PLT++IG+  LL  +     + ++++Y+ 
Sbjct: 136 KRTLAERADKAKRAEQQKNDLVVYLAHDIKTPLTSVIGYLSLLDETP-DMPDEEKAKYIH 194

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                +  L  LVN+  ++    +  + L  + + L  ++ ++   +  +++     I+ 
Sbjct: 195 TAWEKANRLRTLVNEFFEITRSHSEALPLQKTKVDLYYMIAQISDELYPQLNACGKIIEN 254

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  + S   D  +L ++F+ IL NA+ +S + S VI  +AR+  ++      N   IP
Sbjct: 255 HVDEDI-SVYGDSDKLARVFNNILKNAISYSEENS-VIKVSARELSEWTVIQFENDGEIP 312

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED    +F++F  +SNA   +  G GLGL+I ++ I LHGG +   SS+ G T     IP
Sbjct: 313 EDKLNVIFDKFCRLSNARLSETGGSGLGLAIAKNIIVLHGGQIRAESSN-GRTAFIIEIP 371

Query: 790 S 790
           S
Sbjct: 372 S 372


>gi|289668826|ref|ZP_06489901.1| two component sensor-regulator hybrid protein RpfC [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 598

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 15/230 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ALT      R A+E K+ F+ ++S+E R+PL  + G  +LL  +KL   +++QS+Y++ I
Sbjct: 51  ALTRALNDARHANEAKSKFLANMSHEFRTPLNGLSGTAELLAVTKL---DAEQSEYLKTI 107

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            AS+  L +LV ++LD++ ++AG ++L  +  +L  LL+ V   +  +     I  +V +
Sbjct: 108 QASALNLRSLVEEVLDISAIEAGKVRLIRTHFLLASLLDSVALILRPQATNKGIGYQVEV 167

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFI---FSVKNN 726
           +     + V D   L Q+   ++ NA+ F+ +GS V LK +R     GD I   F V++ 
Sbjct: 168 AAYVPANLVGDAGHLSQVLLNLIGNAVKFTDEGS-VDLKVSRVASLPGDRICVRFEVRDT 226

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           G  +P  M   VF+ F      G  R   G GLG +I +  +   GG + 
Sbjct: 227 GIGVPVAMQSRVFDAF-QQGDMGLNRHYEGTGLGTTIAKGLVESMGGRIG 275


>gi|225575609|ref|ZP_03784219.1| hypothetical protein RUMHYD_03701 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037162|gb|EEG47408.1| hypothetical protein RUMHYD_03701 [Blautia hydrogenotrophica DSM
           10507]
          Length = 662

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 114/215 (53%), Gaps = 5/215 (2%)

Query: 561 ALR-KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           ALR + ++++ + ++ +S++LR+PLT+I G  D+L  S     +S++++    I   +  
Sbjct: 427 ALRLQQEQLRGNLLRAISHDLRTPLTSISGNADMLMKSYQMMADSERTRIFHDIYEDAVW 486

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+NLV ++L +  ++ G M +     ++ D+L+   + +    H  N ++KV     +  
Sbjct: 487 LINLVENLLSVTRIENGTMDIVLQPEMVEDVLDASMKHL--NRHVKNHKLKVSQADDMLM 544

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D + ++Q+ + ++ NA   + +GS + +         +F V +NG  +PED  + +F
Sbjct: 545 AKMDAKLIIQVLTNLVDNAFKHTPEGSEIEINVYEKRHKVVFEVADNGDGVPEDQKEKIF 604

Query: 740 NRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHV 772
             F S  H     RR +G+GL++ +S I  HGG +
Sbjct: 605 TMFYSGDHTTSDGRRCMGMGLTLCKSIIEAHGGRI 639


>gi|168000947|ref|XP_001753177.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162695876|gb|EDQ82218.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 970

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 126/239 (52%), Gaps = 28/239 (11%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+RSPL+ ++   ++L T++L   + +Q Q V+ + +S  ++L L+NDILDL+ V +
Sbjct: 373 MSHEIRSPLSGVVSMAEVLATTQL---DEEQRQLVDVMVSSGDLVLQLINDILDLSKVQS 429

Query: 636 GIMKLNYSTIVLNDLLNEVKQ-SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           G MK         +++  V Q ++A    +N I    I D      + D  R+ Q+F+ +
Sbjct: 430 GAMKFEAKKFRPREVVKHVLQMALANTQSKNLILEGRIYDDVPLEVIGDVLRIRQVFTNL 489

Query: 695 LSNAMDFSSKGSTVIL------------KAAR-----DNG--DFIF---SVKNNGSSIPE 732
           + NA+ F+ +G+  I             +AA+     D G  D ++    V ++G  IPE
Sbjct: 490 VGNAIKFTHEGNVTISVRVVPPPPPSIERAAKNEPAVDEGVEDTVWLLCEVSDSGIGIPE 549

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               ++F ++  VS  H  +  G GLGL+I ++ + L GG++++ S +   +T +  +P
Sbjct: 550 SALPTLFEKYTQVSATHARKYGGTGLGLAICKNLVELMGGNLTVVSKENHGSTFSFALP 608


>gi|160939833|ref|ZP_02087180.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437267|gb|EDP15032.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC
           BAA-613]
          Length = 465

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 120/230 (52%), Gaps = 5/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           + K  +I+  F  + S+EL++P+T+I G+ +LL++  +   +  +  + + I   +  + 
Sbjct: 234 IEKEKQIRQEFFSNASHELKTPITSIQGYAELLESGMIQD-DGLKLDFAKRIKKEAAGMT 292

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL ++ +++   ++ +S + ++ LL E+  S+        + + V  D K     
Sbjct: 293 GLINDILMISRLESMDAEVMFSDVRISVLLQEIMDSLKPLAASCQVFLHV--DCKPLCIR 350

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           A+ Q++ ++F+ + +NA+ ++  G  V +       D +  VK+NG  IP++    +F R
Sbjct: 351 ANLQQMKELFTNLATNAIKYNRPGGQVWITVGEQGDDMLVRVKDNGVGIPKESLDRIFER 410

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V      ++ G GLGLSIV+  +N + G + ++S  +  T     IP
Sbjct: 411 FYRVDKGRSRKQGGTGLGLSIVKHIVNFYHGTIHVTSELDKGTEFTVTIP 460


>gi|75761496|ref|ZP_00741459.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491013|gb|EAO54266.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 895

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 481 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 540

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 541 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 600

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 601 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 660

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 661 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 720

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 721 EGSTFTVYIPN 731


>gi|332980719|ref|YP_004462160.1| histidine kinase [Mahella australiensis 50-1 BON]
 gi|332698397|gb|AEE95338.1| histidine kinase [Mahella australiensis 50-1 BON]
          Length = 448

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 14/233 (6%)

Query: 553 RALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R + E NE L        K ++++   + ++S++LR+PLT I G+ ++++   L   N+ 
Sbjct: 204 REIMELNETLNNAAKELAKTEKLRRELIANISHDLRTPLTMITGYGEIIR--DLPDENTP 261

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           ++  +  I   +  L  LVND+++L+ + +G  +L  S   L D+  +  +  A    ++
Sbjct: 262 EN--IRVIIDEANRLTRLVNDLMELSQLQSGTQQLQISRFNLTDVAKQTIERCAQFTKKD 319

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
              I   SDG      AD  ++ Q+   +L NA+ ++ K  TV +     +G    SVK+
Sbjct: 320 GYDITFSSDGD-AWVEADELKISQVIYNLLGNALTYTGKDKTVAVSQQIKDGYVRISVKD 378

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  I  +   ++++R+  V   HR    G GLGLSIV+S I +H G   + S
Sbjct: 379 TGDGISPEHIDNIWDRYYKVDKTHRRAALGTGLGLSIVKSIIQMHDGKCGVES 431


>gi|313108338|ref|ZP_07794370.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|310880872|gb|EFQ39466.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 741

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M  ++++T+  R  R L    EA+R+ADE    K+ F+  +S+E+R+P+  +IG  +L+ 
Sbjct: 218 MNGWIDITERERLARQL---REAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL 274

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    + S  V Y +A S  L  L+ DILD+A +++G + L    + L  ++  V+
Sbjct: 275 QRLAPEQRERASLEVAYEAAGSLQL--LIGDILDVAKIESGHLTLTPERVRLRHVVESVR 332

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       +  +R+ V  D   G  V  D  R  Q+ S ++SNA+ F+ +G   I    R
Sbjct: 333 RMFEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERGQVTIRLQER 392

Query: 715 --DNGDFIFSVKNNGSSI---PEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
             D G  I  V    S I   P D  + +F  F+  A  R  + G GLGL+I    ++L 
Sbjct: 393 SLDEGRAIVRVGVEDSGIGIAPADQAR-LFQPFIQVAKGRTVQGGTGLGLAICRKLVDLM 451

Query: 769 GGHVSISS 776
           GG V + S
Sbjct: 452 GGDVEMHS 459


>gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1305

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 15/241 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    LT    A   A+  K++F+  VS+E+R+P+  +IG + LL  +    L  +Q  Y
Sbjct: 600 RQNEELTAAKHAAEVANAAKSNFLAIVSHEIRTPMNAVIGMSGLLLDT---CLTPEQFDY 656

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  SS  LL ++NDILD + +++G ++L      L   + E    +A +     + +
Sbjct: 657 VETIRNSSDTLLTIINDILDFSKIESGKLELEEQPFDLRICIEEALDLLAPQAASKGLDL 716

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFI----- 720
               D  L +  + D  RL QI   +LSNA+ F++ G  VI    R+      FI     
Sbjct: 717 VYFIDPHLPTQIIGDITRLRQILWNLLSNAVKFTAMGEVVISVQGRELEFYPPFISTYEI 776

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F+V++ G  I  +  + +F  F        RR  G GLGL+I +    L  G + ++S 
Sbjct: 777 QFAVQDTGVGIAREQMERLFKPFSQGDASMTRRYGGTGLGLAISKRLSELMRGRMWVASQ 836

Query: 778 D 778
           +
Sbjct: 837 E 837


>gi|27366593|ref|NP_762120.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
 gi|27358159|gb|AAO07110.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
          Length = 1199

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 11/255 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F +++D  + E AL E N A  +A E +N F+  VS+ELR+P+  ++G  ++L + +L  
Sbjct: 640 FSDISDLKQTELALRESNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEIL-SHRLS- 697

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            NS+  Q ++    S+  L   VNDILD + ++A  ++L+     + + L  V +S    
Sbjct: 698 -NSESQQLLDNAIRSAERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPVLRSFEAS 756

Query: 662 MHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                ++  V    +  +++    D  R+ QI S +LSNA+ F+  G  + ++ A D   
Sbjct: 757 AQLKGLQFNV--HWQPTAYIDAQYDALRVNQIVSNLLSNAVKFTEVGQ-IKVEIACDENA 813

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               + + G  + E     VF  FV       RR  G GLG+SIV+S ++L GG ++  S
Sbjct: 814 LSIEIVDTGCGMTEAQLDCVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMGGTIAFYS 873

Query: 777 SDEGVTTINCRIPSK 791
             E  T ++  IP K
Sbjct: 874 ELEQGTKVSVWIPVK 888


>gi|326391352|ref|ZP_08212891.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992615|gb|EGD51068.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 446

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 118/218 (54%), Gaps = 7/218 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D+ +   + ++S++L++PL  I G++++L     G    K+ +Y+  +   +  +  LV+
Sbjct: 228 DKFRKDLIANISHDLKTPLGLIRGYSEML-LDYYGDDKEKREKYLNTVIKETERMSKLVD 286

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+L L+ + +G++++    I L  L+ E       ++ E NI +K +++ KL   +ADR+
Sbjct: 287 DVLQLSKLQSGMVEIKEEPIDLEKLIFETLDIFEIQILEKNIEVK-LNNLKL-KVIADRE 344

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + ++   I+SNAM     G  + + A   + + +  V + G  IP+   + +F+R+   
Sbjct: 345 MIKRVIINIISNAMASMENGGILTITAEPQDKEILIKVSDTGCGIPQKDLEHIFDRY--- 401

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            ++G + G GLGL+IV+  + LHG    I S ++  TT
Sbjct: 402 -YKGNKSGTGLGLAIVKEILTLHGSKYGIESKEKIGTT 438


>gi|328949780|ref|YP_004367115.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450104|gb|AEB11005.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 368

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 9/222 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL + +  +   +  V++ELR+PL  + G+ + L    +    + Q+     I+   + 
Sbjct: 138 EALDRVEASRVELIGTVAHELRTPLAALQGYAEALADGVMPPERAAQA-----IAREVSA 192

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVND+  ++ V+AG ++++  ++    LL E     A    +  +R+ + +  ++  
Sbjct: 193 MRRLVNDLSLVSRVEAGAIEVHPVSVAPRVLLEEALDRFAPAFAQKGVRLLLEAPEEMPW 252

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
             AD +R+ Q+ S +L NA+  +  G TV+L  AR  GD + F V++ G  IP +    V
Sbjct: 253 VQADPERVQQVLSNLLVNALRHTPSGGTVVL-GARVEGDAVRFHVRDTGPGIPPEHQPRV 311

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F RF  V  A      G G+GL+I    +   GG + + S+ 
Sbjct: 312 FERFYRVDPARSRSAGGSGVGLTIARGLVEAMGGRIGLESAP 353


>gi|284802938|ref|YP_003414803.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284996079|ref|YP_003417847.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
 gi|284058500|gb|ADB69441.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284061546|gb|ADB72485.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
          Length = 591

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 10/236 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E NI++ +I +  + S
Sbjct: 416 LHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQV-IIPEKTIPS 474

Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      
Sbjct: 475 VTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDR 534

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VF RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 535 VFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|167634148|ref|ZP_02392470.1| putative sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167640071|ref|ZP_02398338.1| putative sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170689712|ref|ZP_02880887.1| putative sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170709460|ref|ZP_02899864.1| putative sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|190567406|ref|ZP_03020320.1| putative sensor histidine kinase [Bacillus anthracis
           Tsiankovskii-I]
 gi|229600008|ref|YP_002864904.1| putative sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254686670|ref|ZP_05150528.1| sensor histidine kinase, putative [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724746|ref|ZP_05186529.1| sensor histidine kinase, putative [Bacillus anthracis str. A1055]
 gi|254736995|ref|ZP_05194700.1| sensor histidine kinase, putative [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744176|ref|ZP_05201858.1| sensor histidine kinase, putative [Bacillus anthracis str. Kruger
           B]
 gi|254761866|ref|ZP_05213715.1| sensor histidine kinase, putative [Bacillus anthracis str.
           Australia 94]
 gi|167511882|gb|EDR87261.1| putative sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167530462|gb|EDR93177.1| putative sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170125627|gb|EDS94550.1| putative sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170666326|gb|EDT17114.1| putative sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|190561533|gb|EDV15504.1| putative sensor histidine kinase [Bacillus anthracis
           Tsiankovskii-I]
 gi|229264416|gb|ACQ46053.1| putative sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 337

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 118/229 (51%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 103 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 161

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI+++V+        +A
Sbjct: 162 LVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPESTCPIIA 221

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   L++I   ++ NA+ +   G T+ ++    +  +   + + G  IP+   ++VF R 
Sbjct: 222 DHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDLQNVFERM 281

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +      G GLGLSI ++ +  +GGH+ + S     TT    IP
Sbjct: 282 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIP 330


>gi|160880969|ref|YP_001559937.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans
           ISDg]
 gi|160429635|gb|ABX43198.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans
           ISDg]
          Length = 860

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 18/245 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGS 601
           ++T+S    + L E  E   KA+  K+ F+ H+S+E+R+PL  IIG TD+L  K +    
Sbjct: 322 DITESNNYMKNLIEMREQAEKANSAKSIFLAHMSHEIRTPLNAIIGLTDILLHKDTDFEL 381

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N      +  I  +   LL+L+ND+LDL  +++G + L      L  +++EV   I  K
Sbjct: 382 HND-----ILNIKHAGGTLLSLINDVLDLTKIESGKLTLVDEPYKLTSVVHEVINIIGVK 436

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF- 719
           +    + ++V ISD     F  D  RL Q+   +++NA+ F+ +G T+ L+    + D  
Sbjct: 437 LMSKPVSLQVSISDQIPKYFYGDELRLRQVLINLMNNAVKFTERG-TISLQVELSSFDLD 495

Query: 720 ------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                 IF V++ G  I +D  K +F+ F   +        G GLGL+I +  I   GG 
Sbjct: 496 TQTAQLIFHVRDTGLGIAKDDQKRIFHSFEQGSVGSDVLVEGSGLGLTICKRIIESAGGA 555

Query: 772 VSISS 776
           + + S
Sbjct: 556 IKVKS 560


>gi|16127332|ref|NP_421896.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|13424758|gb|AAK25064.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
          Length = 560

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+  +S+ELR+P+  ++G    L+ +KL   +++QS+Y+E I  S   L+ ++NDIL
Sbjct: 186 KSAFLAMMSHELRTPMNGVLGLAHALRGTKL---DAQQSEYLEMIEQSGHGLMTILNDIL 242

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVADRQR 686
           DL+ ++AG + L  +   L  L  + +   S + ++   ++ ++V S         D  R
Sbjct: 243 DLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESARLKGLDLILEV-SPSAPPWVSGDATR 301

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + QI   ++SNA+ F+  G  VI       G    SV + G  +  +    +F  F    
Sbjct: 302 VRQILMNLVSNALKFTESGRVVIRLGGEAGGVVTLSVTDTGVGMTAEQIGRLFTPFAQGD 361

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
               RR  G GLGLSI      L  G + I SS+ GV +T   R+
Sbjct: 362 ASIARRFGGTGLGLSICRQLAELMAGEI-IVSSEPGVGSTFTVRL 405


>gi|16804538|ref|NP_466023.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47096093|ref|ZP_00233694.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|224499856|ref|ZP_03668205.1| two-component sensor histidine kinase [Listeria monocytogenes
           Finland 1988]
 gi|224503259|ref|ZP_03671566.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           R2-561]
 gi|254900362|ref|ZP_05260286.1| two-component sensor histidine kinase [Listeria monocytogenes
           J0161]
 gi|254913399|ref|ZP_05263411.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
 gi|254937780|ref|ZP_05269477.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|16411988|emb|CAD00578.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47015554|gb|EAL06486.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|258610383|gb|EEW22991.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|293591405|gb|EFF99739.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
          Length = 591

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 10/236 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E NI++ +I +  + S
Sbjct: 416 LHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQV-IIPEKTIPS 474

Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      
Sbjct: 475 VTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDR 534

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VF RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 535 VFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|284009349|emb|CBA76532.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase [Arsenophonus nasoniae]
          Length = 952

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 134/254 (52%), Gaps = 11/254 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+++  V+ E +L    +A  +A++ K+ F+  VS+ELR+PL  IIG  +LL++ +L 
Sbjct: 442 VLVDISARVQMENSLHNMAQASEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSYELP 501

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +  + +  +  SS++LL ++NDILD + +++  + ++ +     ++ + +  +   
Sbjct: 502 ---IQADRLLTTMDHSSSLLLKIINDILDFSKIESKQLNIDPAPFNCREVFSFIISNYIP 558

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + I    D  +   + AD  R+ QI S ILSNA+ F+  G  ++    +D   +
Sbjct: 559 LIGKKGLSIFYYIDPDVPDIINADSVRVQQIISNILSNAIKFTKTGFILLNIFIKDFYIY 618

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           I  +++ G  IP+++   +F+ F    V+N    Q  G GLGL I E  INL  G + ++
Sbjct: 619 I-EIRDTGIGIPDNILMQLFDPFFQIKVNNESFSQ--GTGLGLPICEKLINLMDGDIEVN 675

Query: 776 SSDEGVTTINCRIP 789
           S     ++   R+P
Sbjct: 676 SQVGIGSSFTVRLP 689


>gi|255025954|ref|ZP_05297940.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J2-003]
          Length = 591

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 10/236 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E NI++ +I +  + S
Sbjct: 416 LHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQV-IIPEKTIPS 474

Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      
Sbjct: 475 VTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDR 534

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VF RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 535 VFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|254466327|ref|ZP_05079738.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
 gi|206687235|gb|EDZ47717.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
          Length = 515

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 135/294 (45%), Gaps = 20/294 (6%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           K L   ++  +       + VW + + G++ W+N++Y         + QK  G +   F 
Sbjct: 141 KSLDQELTTLRAAVHQAPYPVWLQSEEGNVTWSNLAYDN-------LSQKIRGRNAD-FA 192

Query: 246 EEIKKRM---ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----E 298
           + +   +   ++S   E+ F   +   E      Y +       G    A+DV+     E
Sbjct: 193 DPLFTDLHDPMTSGKPERIF---IPLPESKKKLWYNVSTTETEAGWLCHAVDVNAVVDAE 249

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +   + +    +    L++ +AIFD+NR L   N   ++L  +   FL++ P+     + 
Sbjct: 250 VAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALPANFLSSRPNLLTFFDR 309

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           LR    +PE  ++ +W+  +  + +++    +++TW LP+G    V    +P G   ++F
Sbjct: 310 LRDQRMMPEPKSYSSWRHQMADLLEAAAEGRYQETWSLPSGSVYKVSGRPHPDGAIAFLF 369

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           E++T +V L  ++ + +++    +D + E + VF  DG +   N A+ SLW+ +
Sbjct: 370 EDITAEVTLTRQFRSELEMGQSILDQMDEAIGVFASDGTMTFCNTAYGSLWQMD 423


>gi|193216183|ref|YP_001997382.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
 gi|193089660|gb|ACF14935.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
          Length = 1492

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 132/250 (52%), Gaps = 16/250 (6%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-S 607
            +R  RAL  K + L   D I+N+F   V ++++ PL+ I G++D+LK     +++ +   
Sbjct: 1249 LRRIRALQRKQKEL---DTIRNNFFAMVVHDMKVPLSAIYGYSDMLKNFNPQTVDPEYFE 1305

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLN---YSTIVLNDL-LNEVKQSIATKMH 663
            + +  I  S+  +  LV +ILD +  ++ ++ LN   +S ++  DL L++ +  +  K  
Sbjct: 1306 EIMSRIHLSAGNINRLVQEILDFSKYESKMVSLNKQRHSLVLCIDLVLDQSQHDLQKK-- 1363

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDF- 719
            +  +R  V S     SF  D  +L+++F+ + SNA+ FS   ST+   I     DN  + 
Sbjct: 1364 QITVRRNVGSSDFYFSF--DFDKLVRVFTNLFSNAIKFSKPESTIDLIIRHEVYDNKPYA 1421

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + S+K+ G  IPE+  + +F+ +     +   RG GLGLSI +  + LHGG +   S  +
Sbjct: 1422 LVSIKDEGEGIPEEEVELIFDAYKQAQSKHGSRGTGLGLSITKQIVELHGGEIWAESELD 1481

Query: 780  GVTTINCRIP 789
              TT +  +P
Sbjct: 1482 VGTTFHFYLP 1491


>gi|222056652|ref|YP_002539014.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221565941|gb|ACM21913.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 256

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L E+   L++A +   S    +S++LRSPL NI GF  LL       L  +  +Y+E
Sbjct: 20  EKQLEERTLQLQEAQQELGSLNYAISHDLRSPLRNIFGFAHLLSKKYGDRLQGQGLEYLE 79

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +    +  +++D+L L+ +  G +++   T+ L+ +   + Q +     E   +++V
Sbjct: 80  MIMSGVARMGRMIDDLLTLSRI--GRLEMKKETVDLSAMATAILQELQESQPERQTQVEV 137

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGD-FIFSVKNNGSS 729
             + K+     DRQ L      +L NA  F+      I++  +R  GD  ++ V++NG+ 
Sbjct: 138 APEIKV---TGDRQLLQAALRNLLDNAWKFTRDTQPAIIRFGSRQEGDRTVYFVRDNGAG 194

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
              D    +FN F       +  G G+GL+IV+  I  HGG VS   ++ EG T
Sbjct: 195 FAADQLYRLFNPFQRLHLESEFPGTGMGLAIVKKAIQRHGGRVSAEGAEGEGAT 248


>gi|51246144|ref|YP_066028.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50877181|emb|CAG37021.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1102

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K++F+ ++S+E+R+P+ +++GF  +   S+L  L ++  +++E   +S+ 
Sbjct: 504 KEAAETANIAKSAFLANMSHEIRTPMNSVLGFIQITLESRL--LCAELRRHLETAYSSAK 561

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++NDILD++ +++G   L  + + +  ++ E  +++ ++  E  I +    D  L 
Sbjct: 562 GLLIIINDILDVSKLESGEFALEATCLDMPRIVQEALKTVESQAEEKGIGLDFHFDADLP 621

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMC 735
             ++ D  RL Q+   ++ NA+ F+  G   I   A D GD    FSV + G  +  +  
Sbjct: 622 HCYLGDPTRLGQVIINLVGNAIKFTKTGKITIGVRASDQGDASLHFSVADRGIGMTAEQA 681

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            ++FN F        R   G GLGL+I +  + L GG + + S    GVT
Sbjct: 682 ANIFNPFTQADISTARCYGGTGLGLTISKQLVELMGGRIWVESELGRGVT 731


>gi|326780366|ref|ZP_08239631.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660699|gb|EGE45545.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           cf. griseus XylebKG-1]
          Length = 388

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA R+ +      +  V++ELRSPLT++ GFT  L        + ++   +E + A + 
Sbjct: 149 TEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAG 208

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  L+ ++LD++ +D+G ++L    + ++  +    Q++ T     + R +V + G L 
Sbjct: 209 RVTRLIAELLDISRIDSGRLELRRQPVDVSAAVARHIQALITGGQAPD-RFRVRARGPLP 267

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPED 733
           +  AD  ++ Q+   +L NA+       T+ +  A   G         +V + G  IPE+
Sbjct: 268 ALWADPDKVDQVLGNLLENAVRHGEGTVTIEIAPAPAPGADDETGTAVTVSDEGPGIPEE 327

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
               VF RF   + RG   G GLGL IV+  +  HGG +++     G
Sbjct: 328 SMSRVFTRFWRGSKRG---GTGLGLYIVKGIVEAHGGTITVDRGPGG 371


>gi|261867539|ref|YP_003255461.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412871|gb|ACX82242.1| aerobic respiration control sensor protein ArcB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 619

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 5/234 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + V AE+ L+E  + L K +  K + +  +S+ELR+PL  IIG + +L      + + 
Sbjct: 102 VQERVSAEKKLSEALDNLEKINRDKTTLMTTISHELRTPLNGIIGLSRILLEE---NPSE 158

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  Y++ I++S+  L ++ +DI+DL  +DA  ++LN     L  LLN++         E
Sbjct: 159 RQQNYLKTINSSALSLAHIFSDIIDLEKIDAKRIELNRKATDLYALLNDIANFALLMTEE 218

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            +++ +++    L +++  D  RL Q+   +++NA+ F+ +GS  +        +F   V
Sbjct: 219 KHLQFQLVCPPTLPNWLMLDGVRLNQVLWNLINNAVKFTQQGSVTLSVEQTAEEEFALRV 278

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            + G  I E   + +F  +        +  G G+GLS+ ++   L GG +++SS
Sbjct: 279 TDTGIGIVEQDLQKIFELYYQAGSDANKSLGSGIGLSVSKTIAQLMGGDLTVSS 332


>gi|259501352|ref|ZP_05744254.1| sensor histidine kinase [Lactobacillus iners DSM 13335]
 gi|302190927|ref|ZP_07267181.1| two-component system sensor histidine kinase [Lactobacillus iners
           AB-1]
 gi|309803543|ref|ZP_07697636.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|309810087|ref|ZP_07703933.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312870929|ref|ZP_07731034.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872238|ref|ZP_07732311.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312873653|ref|ZP_07733700.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653103|ref|ZP_07906028.1| sensor histidine kinase [Lactobacillus iners ATCC 55195]
 gi|325912931|ref|ZP_08175305.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners UPII 60-B]
 gi|329920995|ref|ZP_08277523.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners SPIN 1401G]
 gi|259167205|gb|EEW51700.1| sensor histidine kinase [Lactobacillus iners DSM 13335]
 gi|308164427|gb|EFO66681.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|308169586|gb|EFO71633.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311090906|gb|EFQ49303.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LEAF 2052A-d]
 gi|311092322|gb|EFQ50693.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093619|gb|EFQ51958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LEAF 3008A-a]
 gi|315489468|gb|EFU79105.1| sensor histidine kinase [Lactobacillus iners ATCC 55195]
 gi|325477745|gb|EGC80883.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners UPII 60-B]
 gi|328935271|gb|EGG31751.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners SPIN 1401G]
          Length = 393

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 136/255 (53%), Gaps = 14/255 (5%)

Query: 544 NVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +V DS+ A       A++E+    +  DE+    + ++S++LR+PLT+IIG+  LLK  +
Sbjct: 133 DVVDSINALVDSTCMAISEEKAVEKSKDEL----IANLSHDLRTPLTSIIGYMSLLKMHQ 188

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQS 657
              L +++ +Y+  +   S  + ++ ND+ + AT++ +   KL    I ++ L+ ++   
Sbjct: 189 NSMLPAQRQEYLNIVFDKSLQMKSMTNDLFEYATLNFSHDKKLELEQIKISSLIEQIAAG 248

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A +  +  I IK   + +      D ++++++F+ ++SNA+ +      + +   + + 
Sbjct: 249 FALEAEKKQIDIKTSCEPQDLEIAVDVKKIVRMFNNLISNAVKYGVGAKNIYVSVKKISN 308

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D +   V N+G +IP+D    +F+RF  V  +   +  G GLGL+I ++ + +H G +  
Sbjct: 309 DMVQIIVSNDGQAIPQDALGKLFDRFYRVEESRSPKTGGSGLGLAITKTIVEMHHGTI-F 367

Query: 775 SSSDEGVTTINCRIP 789
            +S++ +T+    +P
Sbjct: 368 CTSNQKLTSFIIDLP 382


>gi|296122662|ref|YP_003630440.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015002|gb|ADG68241.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 810

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 14/234 (5%)

Query: 556 TEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSLNSKQSQY 609
            E+ E LR A E     K  F+ ++S+E+R+P+T I+G+T+LL   +   G+ ++++ + 
Sbjct: 391 AEEMERLRNAAESANRAKTDFLANMSHEIRTPMTAILGYTELLAENSDPAGTTSAERIEC 450

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +   LL ++NDILDL+ ++AG+M +      L  L+ +V+  +  K     I +
Sbjct: 451 IETIRRNGDHLLEIINDILDLSKIEAGMMTVEKIPTDLAYLVKDVESLMQFKATRKGINL 510

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----IFSVK 724
           ++     L + +  D  RL QI   +L NA+ F+  G  V +K   D   F    +  V 
Sbjct: 511 RLNLVEPLPTIIHTDPVRLKQILVNLLGNAIKFTEHGE-VSMKVHTDANTFPGLIVIDVV 569

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  +       +F  FV       R+  G GLGL I +S   L GG+++ISS
Sbjct: 570 DTGIGMTPQQMSQLFGAFVQADTSTTRKFGGTGLGLRISKSLAQLLGGNITISS 623


>gi|209966158|ref|YP_002299073.1| histidine protein kinase DivJ [Rhodospirillum centenum SW]
 gi|209959624|gb|ACJ00261.1| histidine protein kinase DivJ [Rhodospirillum centenum SW]
          Length = 529

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 4/226 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+   S+ELR+PL  I+GFT+ L     G L+ KQ++ V  I  +   LL+LVND+L
Sbjct: 281 KSEFLSGTSHELRTPLNAILGFTEALTAGIYGPLSPKQAEAVTVIRDAGAHLLDLVNDLL 340

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA V+A  + L+   +    +  EV + +A +  +N + +   +   L    AD  RL 
Sbjct: 341 DLARVEARRLPLDPEAVDAALVAREVTEMLALQAAQNGVALSCTAAAGLPPVWADPLRLR 400

Query: 689 QIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSI-PEDMCK--SVFNRFVS 744
           QI + + +NA+ F+ +G  V L+      G  +  V++ G  I  EDM +    F     
Sbjct: 401 QIVTNLAANAVKFTLRGGQVRLELEPAPGGGLLLRVRDTGIGIRAEDMDRLMQPFQTLRD 460

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            A      G+GLGL++  + +  HGG + + S     TT+   +P+
Sbjct: 461 PAGPRPNEGLGLGLALTRALVEQHGGTMRLESRHRAGTTVTVTLPA 506


>gi|169334578|ref|ZP_02861771.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259295|gb|EDS73261.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM
           17244]
          Length = 591

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +S+  + +L  K    + A+  K+ F+  +S++LR+PL  IIG + L     +     + 
Sbjct: 197 NSILEQESLKAKLNEEKSANSAKSEFLSRMSHDLRTPLNGIIGSSYLALNDDIP--REEV 254

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y+  I+ S   LL+L+ND+LD++ +++  M+L+     L++ L+ V   I  +  EN+
Sbjct: 255 NDYLNKINQSGKYLLSLINDVLDMSKIESDKMELHPEPYTLSEFLDTVNSIIKEQCSEND 314

Query: 667 IRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--- 720
           I   ++  +  +   + DR R  QIF  +LSN++ F+ KG  +  I++    + D I   
Sbjct: 315 IDFDIVCKEVDIKCVMLDRLRFNQIFLNLLSNSVKFTPKGGKIDLIIEHLSKDDDKIKKR 374

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           F V++ G  + ++     F  F          G GLGLSIV   + L  G + I S    
Sbjct: 375 FIVRDTGIGMSKEFLAHAFEPFTQEKAGDTSEGTGLGLSIVYKIVELMNGRIYIESEPGK 434

Query: 781 VTTI 784
            T++
Sbjct: 435 GTSV 438


>gi|221199414|ref|ZP_03572458.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221205683|ref|ZP_03578698.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221174521|gb|EEE06953.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221180699|gb|EEE13102.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 991

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 128/268 (47%), Gaps = 22/268 (8%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T V++T     E++L     A  +A+  K+ F+  +S+E+R+PL  +IG  +L+K   
Sbjct: 474 LCTVVDITARKLTEQSLDAARRAADQANRAKSVFLATMSHEIRTPLNAVIGNLELMKR-- 531

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L   Q + +     SST LL+++ND+LDL+ V+AG ++++        LL++V +S 
Sbjct: 532 -GPLADAQRRRLHAADTSSTALLHILNDVLDLSKVEAGQLRIDAVPFDCAALLDDVTESF 590

Query: 659 ATKMHENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
                     + VI D  L      + D  R+ Q+ S +LSNA+ F+  G   +   A  
Sbjct: 591 RPLAERKG--LSVICDVALEPSPYRIGDPIRIRQVVSNLLSNAIKFTDAGHVRVAAHAVS 648

Query: 714 --------RDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
                    D G  +    V + G  IPE    ++F  +        RR  G GLGL++ 
Sbjct: 649 DAAHGTGRTDGGAPVVEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLGLALC 708

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++   G +++SS+    +T   RIP
Sbjct: 709 RRLLDAMNGDIAVSSAPGAGSTFRVRIP 736


>gi|261406783|ref|YP_003243024.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
 gi|261283246|gb|ACX65217.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
          Length = 1017

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 11/272 (4%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           + ++L++ ++     Q +L  +    S RA   +   +E L   D++K+ F+   S+ELR
Sbjct: 356 TPALLQFGVLGFVFLQALLLSMK---SSRAFFQVERLSERLLTLDKLKDEFLAKTSHELR 412

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  D L     G L S     +  +  S   L +LVNDILD + +    + L 
Sbjct: 413 TPLHGIIGLADALIDGSSGKLPSPVIDLLRLMKVSGQRLAHLVNDILDFSKLKHQEIGLV 472

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             T+ L   +    Q +     +  +R+  ++  D  +   +AD  RL QI   ++ NA+
Sbjct: 473 LVTVNLRLAVELTLQVLNPLAEKKGLRLSHQLPDDMYV---MADENRLQQILHNLIGNAI 529

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
            ++  G TV + A R  G     + ++G  I E     +F  F  ++   R Q+ G G+G
Sbjct: 530 AYTETG-TVTVTAKRLQGQVSVQITDSGIGISEADLDRIFESFEQINPLDRSQQGGTGIG 588

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI +  + LHGG + ++S     +T +  +P
Sbjct: 589 LSITKKLVELHGGRIGVTSGVGEGSTFSFTLP 620


>gi|239828687|ref|YP_002951311.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808980|gb|ACS26045.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 608

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K D  +  FV +VS+ELR+PLT +  + + L     G+   K    +++E +   +  ++
Sbjct: 371 KIDRERREFVANVSHELRTPLTTMKSYLEALAE---GAWQDKAIAPRFIEVVQTETERMI 427

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+L L+ +D+   KLN S +  ++  ++V         EN   ++ I   K   F+
Sbjct: 428 RLVNDLLQLSKLDSKDYKLNKSWVNFSEYFHKVIDRFELTKSENITFVRKIP--KEAIFI 485

Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D+ ++ Q+   I+SNA+ +S +G  +  +      + I SV + G  IP+     VF 
Sbjct: 486 EIDKDKITQVLDNIISNAIKYSPQGGKITFRVRELADEIIVSVSDEGVGIPKGDLAKVFE 545

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A   +  G GLGL+I +  +  HGG +   S +   TTI   +P
Sbjct: 546 RFYRVDKARSRKLGGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLP 596


>gi|329956774|ref|ZP_08297343.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328523813|gb|EGF50900.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 647

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 123/250 (49%), Gaps = 13/250 (5%)

Query: 539 MLTFVNVTDSVRAERAL----TEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGF 590
           +L F+ +T  +R +R      T++ E LR     A   K+ F+ ++S+E+R+PL  + GF
Sbjct: 379 LLMFIVITIVLRRQRQKLTLSTQRLERLRTDAENATSAKSIFLSNMSHEIRTPLNALSGF 438

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + LL    L     +Q    E I  +S +LL L+ND++DL++++ G ++ +     +  +
Sbjct: 439 SSLLTEEGLDDDTRRQCN--EVILQNSELLLKLINDVIDLSSLEFGKIQFSIGRYDVVSI 496

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
              V  ++ +K+ +    I   ++ +      D  RL Q+   +L NA  F+ +GS  + 
Sbjct: 497 CRNVADTV-SKIKQTQAEIYFTTELESMEIETDDSRLQQVLINLLINATKFTPQGSITLE 555

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
              +   + +FSV + G  IP+D   ++F RF       Q  G GLGLSI +  I   GG
Sbjct: 556 LKKQSEQELLFSVTDTGCGIPKDKQAAIFQRFEKLNENAQ--GSGLGLSICQLIIEHIGG 613

Query: 771 HVSISSSDEG 780
            + I     G
Sbjct: 614 RIWIDPDYTG 623


>gi|283836244|ref|ZP_06355985.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
 gi|291067608|gb|EFE05717.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
          Length = 778

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 127/242 (52%), Gaps = 30/242 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KVI+DG          RL QI   ++SNA+ F+ +G  V ++A  D G+ 
Sbjct: 381 VLEPTLPLPHKVITDGT---------RLRQILWNLISNAVKFTPQGQ-VTVRARYDQGNM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP+D    +F  +  V +++ G+   G G+GL++ +      GG +++S
Sbjct: 431 LHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKNMGGDITVS 490

Query: 776 SS 777
           S 
Sbjct: 491 SQ 492


>gi|171059425|ref|YP_001791774.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170776870|gb|ACB35009.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 446

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 9/235 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D++K+ F+   ++ELR+P+ ++ GFT+LL T ++     ++   +E +   S  +++
Sbjct: 208 KQIDQMKSEFLATAAHELRTPMASVFGFTELLVTREMAP--QRRQDVLERVYRQSGAMVS 265

Query: 623 LVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           ++N++LDLA +++G  M   +    L  L+  V    A       I + V  +  L + V
Sbjct: 266 ILNELLDLARIESGRGMDFEFEDTDLAALVRGVVHDFAVPAGREAIDVGVAGELPLRARV 325

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCK 736
            D ++L Q    +LSNA  +S  G  V +    D G         +V + G  +  +   
Sbjct: 326 -DYRKLQQSMRNLLSNAYKYSPDGGPVRVAVRLDTGTSGGPWVAIAVHDRGIGLSAEQLA 384

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V  RF      G   G GLG+SIV+    LHGG + I S     +T   R+P++
Sbjct: 385 RVGERFFRVDKSGALPGTGLGVSIVQQIAELHGGSLEIESRLGEGSTFTLRLPAE 439


>gi|158425731|ref|YP_001527023.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
           571]
 gi|158332620|dbj|BAF90105.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
           571]
          Length = 1121

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 19/268 (7%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R +  L +  E    A+  K+ +V  +S+ELR+PL  I+G+  LL+ 
Sbjct: 640 QTTLLMREIEAHKRTDAKLQKAKEVAEAANLAKSRYVVGISHELRTPLNAILGYAQLLER 699

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               S+ + +   +  +  SS  L  L++ +LD++ ++AG + L    + + DLL+++  
Sbjct: 700 DT--SIPAHRRDAIRVVRRSSEHLSGLIDGLLDISKIEAGRLHLYRDEVRIRDLLDQLVD 757

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     I    +   +L + V  D +RL QI   +LSNA+ F++KG  V L+    
Sbjct: 758 MFRLQASARGIEFIHMRSERLPAVVFTDEKRLRQILINLLSNAIKFTAKGH-VALRVTYR 816

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHG 769
           N    F V++ G  I  +    +F  F     RG R       G+GLGL+I +    + G
Sbjct: 817 NQVAEFEVEDTGIGIAPEERGRIFEPF----ERGSRGGAFNAIGIGLGLTITKLLTEIMG 872

Query: 770 GHVSISSSDEGVTTINCRI-----PSKE 792
           G +S+ S  +  +T   R+     P +E
Sbjct: 873 GEISLKSELDKGSTFKVRLLLSEAPGRE 900


>gi|170727693|ref|YP_001761719.1| hybrid sensory histidine kinase BarA [Shewanella woodyi ATCC 51908]
 gi|169813040|gb|ACA87624.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 937

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L++ Q  Y+  I  S
Sbjct: 292 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHTSQQDYINTIEKS 346

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +T LL ++NDILD + ++AG + L      L +L+ +    ++    E +I + +  D  
Sbjct: 347 ATNLLEIINDILDFSKLEAGKLVLESLPFALRELVGDTVTILSNSAREKDIELVIDIDQS 406

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIP 731
           +  +   D  R+ QI + ++ NA+ F+  GS      +   ++D  +    + + G  I 
Sbjct: 407 VPEALCGDPMRIGQILTNLIGNAIKFTDSGSVHLSLKLTDGSKDKVNIRCEITDTGIGID 466

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
               + +F  F        RR  G GLGL I +  +N  GG +  +S ++EG T
Sbjct: 467 PQQQEILFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCNSKANEGST 520


>gi|86136340|ref|ZP_01054919.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85827214|gb|EAQ47410.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 536

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 136/272 (50%), Gaps = 23/272 (8%)

Query: 529 SIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALR----------KADEIKNSFVQHVS 577
           ++ P+ ++   LT  V  T+ V +ER   E++ AL           +A++ K  F+ ++S
Sbjct: 100 TMTPVFDSTGKLTHMVGSTEDVTSER---ERDAALELTRIAKEKAEEANKAKERFLANMS 156

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+P+  I+G  +LLK ++L   + +QS + + I  S+  LL ++ND+LD + + A  
Sbjct: 157 HEIRTPMNGILGICELLKETEL---DKEQSLFADTIFNSTNALLEIINDVLDFSQITADK 213

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696
           + L+     L  L+ E+   ++ K     ++  V     + S F+ D  ++ QI   ++ 
Sbjct: 214 ISLHPEPFSLRVLIEEIAVLLSAKTAYKGLKFNVNYPENVPSLFIGDVSKVRQILLNLIG 273

Query: 697 NAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           NA+ F+ +G    TV        G   F + + G  I      ++F+ F  VS   +   
Sbjct: 274 NAIKFTDEGHVSITVSHGQGSPAGPLQFEIADTGCGIEASKLGTIFSAFERVSGTQKNLS 333

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G GLGL+I ++ +   GG +S+ S+ +  TT
Sbjct: 334 EGTGLGLAISQALVERMGGEISVKSTPDLGTT 365


>gi|310766624|gb|ADP11574.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
          Length = 909

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 15/232 (6%)

Query: 556 TEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVE 611
            E + A R+A E   IK+ F+ ++S+ELR+PL  +IGFT   LKT     LNS Q  Y+ 
Sbjct: 277 VELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTM----LNSTQRDYLH 332

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +
Sbjct: 333 TIERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTL 392

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NN 726
            I      + + D  R+ QI   +L NA+ F+  G+  I   K A  N      V+  + 
Sbjct: 393 NIQSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDT 452

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I E     +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 453 GIGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHS 504


>gi|304412836|ref|ZP_07394436.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|304348799|gb|EFM13217.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
          Length = 1629

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 125/241 (51%), Gaps = 10/241 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++T+  + E  L E       A+  K++F+ ++S+E+R+P+  ++G   L++ +   S+
Sbjct: 874  LDITEQRQLEETLREAKHEADAANAAKSAFLANMSHEIRTPMNAVLGMLQLMQHT---SM 930

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +Q  YV     ++  LL L+NDILD + +DAG + L+     +  L+ ++   ++   
Sbjct: 931  SVQQQDYVTKTQTAAKSLLGLLNDILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNH 990

Query: 663  HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720
               N+ +    D  L ++ +AD+ RL QI   +  NA+ F+  G  TV ++  R   + +
Sbjct: 991  GNKNVEVMFDLDPALPAWLLADQLRLQQILVNLAGNALKFTRHGQVTVTMECLRHEANTV 1050

Query: 721  ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                S+ + G  I E+  + +F  F        RR  G GLGL+I +  + L GG ++++
Sbjct: 1051 TVQISISDTGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVT 1110

Query: 776  S 776
            S
Sbjct: 1111 S 1111


>gi|229149317|ref|ZP_04277554.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
 gi|228634131|gb|EEK90723.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
          Length = 896

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 602 DTIPDLFYTDTKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|224826722|ref|ZP_03699822.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
 gi|224600942|gb|EEG07125.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
          Length = 1418

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 169/404 (41%), Gaps = 26/404 (6%)

Query: 391  TWHLPNGQTLHVIVTSNPRGGTIWMFENLT----VQVDLETKYNTLVKVQGE---TIDHL 443
             W L  GQ LH     + +GG I    ++T     +  L+   +   + + +    I+ +
Sbjct: 726  VWVLIEGQALH---GESVQGGMILACLDITERKLAEFALQQARDEAAESRHQLLGAIESI 782

Query: 444  SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG----THIRNIAATCSRYYNESDGWDL 499
            SE   ++GP  ++ L N  F  L    E + S      +    + A   R      G+D 
Sbjct: 783  SEAFVLYGPHDQLLLCNQRFADL--VSEGQSSDALLGISFEDTVRALLQRGERPEPGFDA 840

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
               +       R+        L ++  + +   +P   T+  + N+T   + E  L E  
Sbjct: 841  VQWLAERVHRHRQGASSFSLQLGEAWWQINERQIPGRGTVGVWANITALKQQEAELIEAC 900

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                 A+  K++F+  +S+E+R+P+  ++G  +LL    L  L+ +Q   V+ I  S+  
Sbjct: 901  RQADSANHAKSAFLAAMSHEIRTPMNGVLGMVELL---ALTPLDPEQHDAVDTIQESAKT 957

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LL L++DILD + ++AG + L      +  ++ +V            +      D ++  
Sbjct: 958  LLRLIDDILDFSKIEAGRLDLAPEATSVAGIVAQVHGLYLENARRKGLWFTTWVDERVAP 1017

Query: 680  -FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDM 734
              + D  RL QI    +SNA+ F+ +GS    V L A  +    + F V + G  +  D 
Sbjct: 1018 CLLLDSLRLRQILQNFVSNALKFTQQGSVEMRVSLLAEDELAQTLRFDVVDTGIGMTRDT 1077

Query: 735  CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F  F        RR  G GLGL+I      L GG VS+ S
Sbjct: 1078 VARLFEPFTQAESDTTRRFGGTGLGLAICRRLARLMGGDVSLDS 1121


>gi|167623151|ref|YP_001673445.1| hybrid sensory histidine kinase BarA [Shewanella halifaxensis
           HAW-EB4]
 gi|167353173|gb|ABZ75786.1| Hpt sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 929

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L+S Q  Y+  I  S+T LL
Sbjct: 295 QEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYIRTIERSATNLL 350

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +++NDILD + ++AG M L      L + L E    +++   E  +   +  D ++   V
Sbjct: 351 SIINDILDFSKLEAGKMVLENIPFSLRETLEETVTLLSSSAREKELEFVIDVDSRIPEDV 410

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCK 736
             D  R  QI + ++ NA+ F+ KGS  +   L+  ++    +   + + G  I +    
Sbjct: 411 TGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEEIKEQKVHLRCEIIDTGIGIDKQQQS 470

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           S+F  F        RR  G GLGL I +  IN  GG +   S  +  +T    +P
Sbjct: 471 SLFQAFGQADSSISRRFGGTGLGLVITKRLINRMGGQIGCYSEPKQGSTFWFSLP 525


>gi|182439702|ref|YP_001827421.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|62896308|emb|CAH94295.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus]
 gi|178468218|dbj|BAG22738.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 388

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA R+ +      +  V++ELRSPLT++ GFT  L        + ++   +E + A + 
Sbjct: 149 TEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAG 208

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  L+ ++LD++ +D+G ++L    + ++  +    Q++ T     + R +V + G L 
Sbjct: 209 RVTRLIAELLDISRIDSGRLELRRQPVDVSAAVARHIQALITGGQAPD-RFRVRARGPLP 267

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPED 733
           +  AD  ++ Q+   +L NA+       T+ +  A   G         +V + G  IPE+
Sbjct: 268 ALWADPDKVDQVLGNLLENAVRHGEGTVTIEIAPAPAPGADDETGTAVTVSDEGPGIPEE 327

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
               VF RF   + RG   G GLGL IV+  +  HGG +++     G
Sbjct: 328 SMSRVFTRFWRGSKRG---GTGLGLYIVKGIVEAHGGTITVDRGPGG 371


>gi|329849065|ref|ZP_08264093.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328844128|gb|EGF93697.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 595

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 9/214 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  I+G+  LLK+S    L+S+Q   V+ I  S   LL ++ DIL
Sbjct: 276 KSQFLANMSHELRTPLNAILGYAQLLKSS---DLSSQQLSAVKTIQHSGEHLLTVITDIL 332

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D+A V+AG M+L      +      V Q +  +  +  +   + I++      VAD +R+
Sbjct: 333 DIAKVEAGRMELMPGGFDIRACALTVGQMVRVRAEDKGLSFSISIAEDVPQYVVADEKRM 392

Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+   +L NA+ F++ G    S  ++ A  ++    F+V + G  I  D   S+F  F 
Sbjct: 393 RQVLINLLGNAIKFTAAGEVRLSVTVVSAGEESARLCFAVSDTGVGIQADQLDSIFRPFE 452

Query: 744 SNAHR-GQRRGVGLGLSIVESFINLHGGHVSISS 776
              +   +  G GLGLSI    + L GG + + S
Sbjct: 453 QAGNSISKSGGTGLGLSITHQIVKLMGGDIKVES 486


>gi|325859789|ref|ZP_08172919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
 gi|325482715|gb|EGC85718.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 6/239 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V A R    +     +A   K  F  ++S+ELR+PLT I    + +      +L+ +Q  
Sbjct: 371 VYAYRTTVMRRHIEEEATTAKLQFFTNISHELRTPLTLIADPVEYIIHDP--NLSPQQRN 428

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ +  +  +L  LV++ILD   +  G M+L+ S   L++ + +     AT   + +I 
Sbjct: 429 MLQIVQRNVAVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHIT 488

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +++     L    ADR +L +I   +LSNAM ++ +G  +   A+ +       V +NG 
Sbjct: 489 LQLSVPSAL-PMRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADKVKIMVSDNGC 547

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINC 786
            I ++    VF+RF   ++ G   G G+GL++V++F +LH G V++ S + EG T   C
Sbjct: 548 GIAQNDLPYVFDRFYQASNAGH--GTGIGLALVKAFADLHHGEVTVESKEGEGCTFTVC 604


>gi|312131428|ref|YP_003998768.1| pas/pac sensor signal transduction histidine kinase [Leadbetterella
           byssophila DSM 17132]
 gi|311907974|gb|ADQ18415.1| PAS/PAC sensor signal transduction histidine kinase [Leadbetterella
           byssophila DSM 17132]
          Length = 397

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 177/400 (44%), Gaps = 72/400 (18%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           + +EG+ +   DG I  +NP+   ++   EN L+ G  I ++     RY+          
Sbjct: 16  YTTEGIFIVDQDGMIIRANPSAEKIFGYPENTLA-GRRIEDL--IPKRYHK--------- 63

Query: 502 AIITSFDDERKSLQGTLELLSDSV---------------LEYSIIPLPNAQTMLTFVNVT 546
               S  + RKS  G  +  S  +               +E S+ P  N+        V 
Sbjct: 64  ----SHPNHRKSFHGESQARSMGLGRDLYGLRLDGSEFPVEISLSPFSNSTGNFVIAFVI 119

Query: 547 D-SVRAERAL----------------------------TEKN---EALRKADEI---KNS 571
           D SVR E  L                            T KN   +AL++  E+   K+ 
Sbjct: 120 DISVRKEAELKLIAYKDELEKKVEERTLDLRSTIESLETIKNDLDDALKREQELGSMKSR 179

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILD 629
           FV   S+E R+PL  I+    L++  K G+LN   K+ ++++ I ++   L  ++ND L 
Sbjct: 180 FVSIASHEFRTPLATILSSLSLVE--KYGNLNEIEKRDRHIQRIKSAVRNLTEILNDFLS 237

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           L  ++ G + ++  T  ++ L+ EV   +   + ++   ++  + G L  F +D + +  
Sbjct: 238 LNRLEEGKVVISSETFEVDILMEEVYNQVLPLLKKDQTIVRQHT-GSL-RFKSDPRLITN 295

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           I   +LSNA+ FS+ G T+ L +  D+   +  VK+ G  IP    K VF RF   ++ G
Sbjct: 296 ILLNLLSNAIKFSANGKTIRLSSHLDDKGLVLKVKDEGIGIPAGERKRVFERFYRMSNAG 355

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +G GLGLSIV  ++ L  G +S  S++   T     +P
Sbjct: 356 EIQGTGLGLSIVSHYVTLLNGTISFESTENVGTEFTVVLP 395


>gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1210

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++ TD  R E  L    EA   A + K+ F+ ++S+E+R+P+  ++G T+LL  S   +L
Sbjct: 631 IDTTDRKRTEEELRSAKEAAEAASKAKSEFLANMSHEIRTPMNGVLGTTELLLNS---AL 687

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ      +  S   LL ++NDILD + ++AG + L      L  +L E  +      
Sbjct: 688 TDKQRHLASTVHRSGRTLLAIINDILDFSKIEAGKLDLECVDFDLLPVLEESLELFGEAA 747

Query: 663 HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717
               +R+ + I+D        D  R  QI   +LSNAM F+  G    S   ++      
Sbjct: 748 RRKQLRLSQHIADAVPRYLKGDPVRFRQILMNLLSNAMKFTETGGVSLSAEYVEGTTTQA 807

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F+V + G  IP      +F+ F        RR  G GLGLSI +  + L GG +++ 
Sbjct: 808 LLRFAVTDTGIGIPPAAKSRIFDAFSQADGSTTRRYGGTGLGLSIAKQLVGLMGGTITVE 867

Query: 776 SS 777
           S+
Sbjct: 868 ST 869


>gi|162451695|ref|YP_001614062.1| sensory box histidine kinase PhoR [Sorangium cellulosum 'So ce 56']
 gi|161162277|emb|CAN93582.1| sensory box histidine kinase similar to PhoR [Sorangium cellulosum
           'So ce 56']
          Length = 597

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 124/237 (52%), Gaps = 16/237 (6%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           LR+ + ++ +F+ + S+ELR+P+ +I   ++ L     G+L+  ++   +VE I  ++T 
Sbjct: 364 LRRIEGLQRNFIANASHELRTPVASIRASSETLLG---GALDDPEAARDFVEVIERNATR 420

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA---TKMHENNIRIKV-ISDG 675
           L  LV+D+LDL+ ++ G   L+  T+   DL  + + ++A    +  E    +K+ ++ G
Sbjct: 421 LHRLVDDLLDLSRIEGGERPLSPGTL---DLSVQAEAAVALLRGRAMERGTDVKIDVAPG 477

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L    AD + L QI + ++ NA+  +  GS V+++A   NG  +  V+++G  IP    
Sbjct: 478 TL--VAADPRALDQILTNLVDNAIHHTPNGSHVVVRARAANGRVVLEVEDDGPGIPAVHQ 535

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             VF+RF  V         G GLGLSI +  +    G +++++   G       +P+
Sbjct: 536 ARVFDRFYRVDPGRSRASGGTGLGLSIAKHLVEAMSGDITVTTGAAGGALFRITLPT 592


>gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 1284

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 121/269 (44%), Gaps = 39/269 (14%)

Query: 543 VNVTDSVRAERALTEKNEALR-------------------------KADEIKNSFVQHVS 577
           +++TD  RA R L E ++ L                           A + K SF+ ++S
Sbjct: 481 IDITDQERANRELKEMSQTLEHKVWERTRELAVANAELAKAKHEAESAAQAKASFLANMS 540

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+P+  +IG   L  +++L   + +Q  YVE I  S   LL ++NDILDL+ ++AG 
Sbjct: 541 HEIRTPMNAVIGMAHLALSTQL---DPQQRDYVEKIQRSGQHLLGILNDILDLSKIEAGK 597

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILS 696
           +++      L  LL  V   ++ +     + + V +      S   D  R+ Q+     +
Sbjct: 598 LEIEQIDFSLERLLRTVGDLVSERAAAKQLELVVDVQPDVPDSLRGDPLRIRQVLINFTT 657

Query: 697 NAMDFSSKGSTVILKAARDNGDFI-------FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           NA+ F+ +G  VI + AR  G+         F V++ G  I  D    +F  F       
Sbjct: 658 NAVKFTERGEIVI-RVARCAGEHAESRVRLHFEVRDTGIGIDADAIPRLFRSFEQADSST 716

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISS 776
            RR  G GLGL+I    + L GG + + S
Sbjct: 717 TRRYGGSGLGLAISHRLVTLTGGTIGVQS 745


>gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1767

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 128/248 (51%), Gaps = 14/248 (5%)

Query: 538  TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
             +++ V++T+  + ++  L  K EA   A + K  F+ ++S+E+R+P+  IIG + L L+
Sbjct: 1009 AVVSMVDMTELKLLSDELLVAKEEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            T+    L+ KQ  YVE I  +S  LL+++NDILD + ++AG + +      L+ +L ++ 
Sbjct: 1068 TA----LDKKQKNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLS 1123

Query: 656  QSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----IL 710
               + K     + +   ++         D  RL Q+   +++NA+ F+ +G  +    ++
Sbjct: 1124 DMFSEKAAHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLV 1183

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            +   D+    FSV+++G  +  D    +F  F        R+  G GLGL+I +  + L 
Sbjct: 1184 EQQNDDVVLRFSVRDSGIGLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELM 1243

Query: 769  GGHVSISS 776
            GG + + S
Sbjct: 1244 GGTIGVES 1251


>gi|332525007|ref|ZP_08401191.1| signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332108300|gb|EGJ09524.1| signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 1104

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 114/228 (50%), Gaps = 5/228 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K+ F+  +S+ELR+PL  ++GF  LL++     L   Q Q ++ +      LL +
Sbjct: 742 RANRAKSDFLSRMSHELRTPLNAVLGFGQLLESDAAEPLTPLQRQRLQQVLRGGRHLLAM 801

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++ +LDLA +D G + +    +     + E  + +A    E  +R++  +    G  +AD
Sbjct: 802 IDQVLDLAGIDGGTLGVRLEAVPAAAAVAEACRLVAPLAAERGVRLEPPAVAVEGFVLAD 861

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
             RL Q+ + +L+NA+ ++ +G  V + A RD G+ +   V ++G  I     + VF  F
Sbjct: 862 AARLRQVLAGLLTNAVKYNRRGGRVSI-AWRDEGEHLRLEVHDDGPGIAPADQRRVFQAF 920

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  AH     G G+GL++ +  +    G + + S+    +T   R+
Sbjct: 921 ERLEGAHAAS-DGAGVGLALAKWLVEAMHGRIGLDSAPGRGSTFWVRL 967



 Score = 37.7 bits (86), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           DH+ EG+ V GPD R++  NP F  + + +     PGT +R +
Sbjct: 227 DHVDEGLLVAGPDLRVRAMNPRFAEITRLDPALGRPGTPVRAL 269


>gi|326799486|ref|YP_004317305.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
 gi|326550250|gb|ADZ78635.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
          Length = 579

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 14/234 (5%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K+  +  +S+E+R+PLT I GF  L+K +    L ++Q++ V  I ASS +L++ VND
Sbjct: 347 EQKSEMLATMSHEIRNPLTAITGFVYLMKNT---PLTAEQNRMVSSIKASSDMLMDTVND 403

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH---ENNIRIKVISDGKLGSFV-A 682
           ILD+  V++   +     +V     +E+K+++ T      + NI +    DG     V  
Sbjct: 404 ILDMTKVES--QQSEVLKVVSFTPFHEIKETVETMRFIAIKKNISLNFSFDGSQDEMVYG 461

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG--DFIFSVKNNGSSIPEDMCKS 737
           D  RL Q+   +L NA+ ++  G   +   +K    +G  +    +K++G  IP++    
Sbjct: 462 DPFRLKQVVINLLGNAIKYTDIGGVEVYCTMKKGEQDGMQELTVRIKDSGIGIPQEQQTK 521

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F ++        R G GLGL I    I L  G + + S +   +T + RIP K
Sbjct: 522 LFTKYYQAGKENARPGTGLGLYICYQLIKLQHGDIYVESEEGKGSTFSFRIPFK 575


>gi|297579232|ref|ZP_06941160.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC385]
 gi|297536826|gb|EFH75659.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC385]
          Length = 1178

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 124/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 616 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 675

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 676 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 731

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 732 ELGPLLRGFEASAKLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 790

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V + G  + +    S+F  FV       RR  G GLG+SIV + I 
Sbjct: 791 VFKIDVAPEMLTIVVDDTGCGMTQTQIDSLFVPFVQADSTITRRFGGTGLGMSIVANLIE 850

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 851 LMNGKIEVKSEFEQGTQIQVNLP 873


>gi|326777053|ref|ZP_08236318.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326657386|gb|EGE42232.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 509

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 124/242 (51%), Gaps = 12/242 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   +L +K   +   +E    FV  +S+ELR+PLT I    ++L+  +  +L+   +  
Sbjct: 255 RTAGSLEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLE-GEADTLDPMIAPA 313

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  + + +  L +LV +++++   DAG  +L   T+   D+ ++V   I  +   + + +
Sbjct: 314 VHLVVSETRRLNDLVENLMEVTRFDAGTARLVLDTV---DVADQVTACIDARAWLDAVNL 370

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               D + G  V  D +RL  I + ++ NA+     GS V ++   +    +  V+++G 
Sbjct: 371 ----DAERGMMVRLDPRRLDVILANLIGNALKHG--GSPVDVRVRTEGEKLVIEVRDHGP 424

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPED+   VF+RF  ++A R +  G GLGLSI     ++HGG ++ ++S +G      R
Sbjct: 425 GIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALENAHIHGGDITAANSPDGGAVFELR 484

Query: 788 IP 789
           +P
Sbjct: 485 LP 486


>gi|228951472|ref|ZP_04113578.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808179|gb|EEM54692.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 883

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHNNNLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|126740052|ref|ZP_01755742.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6]
 gi|126718871|gb|EBA15583.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6]
          Length = 831

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E   A  +AD  K  F+ ++S+E+R+P+  IIG  DL+  S LG     + QY++ I 
Sbjct: 443 LEEARIAAERADRAKTEFLANMSHEIRTPMNGIIGMADLMSESNLG---EGERQYLDTIR 499

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            SS  LL ++NDILDL+ ++AG + ++     L   ++     +  +  E  + + +   
Sbjct: 500 DSSHALLKIINDILDLSRMEAGKLAISPVDFDLQRCISGAVNLLRPRAREKGLWLSLSFE 559

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIP 731
           +G  G    D  R+ Q+   ++ NA+ F+  G   I   K A D       V++ G  I 
Sbjct: 560 EGLPGLMRGDDGRIRQVLVNLVGNAVKFTHSGGVDIRVSKVAGDPYHLQIEVEDTGIGIK 619

Query: 732 EDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI--SSSDEGVTTINC 786
            +    +F+RF S A     R   G GLGL+I     +  GG +++     D    T+  
Sbjct: 620 PEQAAHIFDRF-SQADAAITRSFGGTGLGLTISSILASRMGGGITLCEDKQDGACFTLQL 678

Query: 787 RIPSKE 792
           R+   E
Sbjct: 679 RLEPAE 684


>gi|71908367|ref|YP_285954.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847988|gb|AAZ47484.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1275

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 9/212 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  I+G T +L+ +     +S Q+  +  I+AS+  LL ++NDILD++
Sbjct: 763 FLANMSHEIRTPMNAIVGLTYMLRRT---ITDSGQADKLGKIAASADHLLGVINDILDIS 819

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++A  + L+ S   L +LL+ V   +  ++ E  + + + +D  LG  + D  RL Q  
Sbjct: 820 KIEANKLALDQSEFNLEELLSRVTSMVIDRVREKRLELIIDTDASLGFLMGDATRLGQSL 879

Query: 692 SKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAH 747
              L NA+ F+  GS V+   L     N   I F V++ G  +  +    +F  F     
Sbjct: 880 INYLGNAVKFTDYGSIVLRARLVEESSNDVLIRFEVEDTGIGVAPENLPRLFQVFEQGDS 939

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              RR  G GLGL+I      L GG   + S+
Sbjct: 940 TTTRRYGGTGLGLAITRRLAQLMGGEAGVEST 971


>gi|83943561|ref|ZP_00956020.1| two-component sensor [Sulfitobacter sp. EE-36]
 gi|83845793|gb|EAP83671.1| two-component sensor [Sulfitobacter sp. EE-36]
          Length = 463

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 4/249 (1%)

Query: 541 TFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           TF+    ++   R AL  +N+    A E K  F+  VS+ELR+PLT+I G  DL+     
Sbjct: 195 TFIKGYSALMKNRLALQTENKNALAASEAKTRFLSTVSHELRTPLTSIRGALDLINAGSA 254

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G +  K S+ ++  + +S  L +LV D+L L + D G   L+   + L +++N    S  
Sbjct: 255 GEVPDKMSRLLDIATRNSNRLGDLVGDLLLLQSADVGKFSLDLGNVDLAEVVNTAAHSFQ 314

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                  + +++           D++RL Q+   +LSNA  FS  G T+ +   R++ + 
Sbjct: 315 PYASRFGVAVEINVAADQPIVRGDKKRLDQVIVNLLSNAAKFSEAGGTIRVGLKREDENL 374

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           + SV + G  IPE     +F  F       QR+  G GLGLSI +  ++ HGG ++   S
Sbjct: 375 VISVADQGIGIPEGSESVIFEEFGQIDSSDQRKFQGTGLGLSISKRIVDAHGGSIAY-KS 433

Query: 778 DEGVTTINC 786
             GV T  C
Sbjct: 434 KLGVGTTFC 442


>gi|304311694|ref|YP_003811292.1| hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
 gi|301797427|emb|CBL45647.1| Hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
          Length = 1000

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 161/372 (43%), Gaps = 62/372 (16%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLW------------KTEENRLSPGT--HIRNIA 484
           T ++  EG+     DGRI  +NPA   L             K    R  PG    ++ +A
Sbjct: 491 TFNNAIEGMYRMSIDGRIVSANPAMAHLLGYDSVDALIAAGKEAVTRCFPGGDGQLQQLA 550

Query: 485 -------ATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                   TC    N    W D F+ +I   +     ++G+L                  
Sbjct: 551 FAGKLQLETCYTGKNGKSIWVDHFSQMIRGANGLPSHIEGSL------------------ 592

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADE--------IKNSFVQHVSYELRSPLTNII 588
                  ++T+  R ER   E++  + K ++         K  F+ ++S+ELR+PLT II
Sbjct: 593 ------TDITE--RKERERAEQDREIDKLEKELATASATAKGDFLANMSHELRTPLTAII 644

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+++ L    L + + +Q+  V+ I  SS  LLN++NDILD + V+A I+++    +   
Sbjct: 645 GYSESLNDQSLSATDEQQA--VDTIIRSSHHLLNIINDILDFSKVEASIVEVENVPLNPY 702

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
            LL +V      K    N+  +V+    L + + AD  RL QI   + SNA+ F+ +GS 
Sbjct: 703 LLLKDVYSYFTQKARSQNLAFEVVYHFPLPNRIHADPTRLKQILLNLCSNALKFTKEGSV 762

Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
            I     +      FSV + G+ + E+    +F  +        R+  G GLGL I +  
Sbjct: 763 TIDVGWDEERKLTRFSVIDTGAGLSEEQIGKLFQSYAQAEASTARQFGGTGLGLVISKQL 822

Query: 765 INLHGGHVSISS 776
               GG + ++S
Sbjct: 823 AEKMGGTIEVTS 834


>gi|254785019|ref|YP_003072447.1| sensor histidine kinase [Teredinibacter turnerae T7901]
 gi|237684515|gb|ACR11779.1| sensor histidine kinase [Teredinibacter turnerae T7901]
          Length = 499

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLV 624
           D+++   + HVS++LR+PL +++G+ +  +  +   L+ KQS +Y+     S+  + +LV
Sbjct: 272 DQLRKELLSHVSHDLRTPLASLMGYLETWEIHR-SDLSEKQSTEYIAIARKSAERISHLV 330

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
             + +LA +D+G +++N     L +L+ +V Q      ++  + + V  +      V D 
Sbjct: 331 EQLFELAHLDSGTVQVNREPFSLPELVQDVLQKFQISANDKQVTLGVTPNDSHIRVVGDI 390

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           ++L ++F+ ++ NA+  ++ G ++ ++  +D       V + G  IPE     VF+    
Sbjct: 391 EKLERVFTNLVENALRHTNAGGSITVRLKQDTRFVAVEVVDTGVGIPEADVPFVFDPHFK 450

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             N+ RG     GLGL+I +  ++LH  H+ + S  D G T
Sbjct: 451 AGNSVRGNTAHGGLGLAITKKLLDLHHAHIEVRSQLDLGTT 491


>gi|229494373|ref|ZP_04388136.1| HAMP domain protein [Rhodococcus erythropolis SK121]
 gi|229318735|gb|EEN84593.1| HAMP domain protein [Rhodococcus erythropolis SK121]
          Length = 373

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 9/228 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R E A  +    L  +D ++   +  +++ELR+P++ +  + D ++   L + NS  
Sbjct: 130 DFTRLETAFADMAARLDHSDRVRKRLLADLAHELRTPVSTLAAYVDGIEDGVLPTDNSSW 189

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S   + +      L  L  D+ D++  D   ++L+     ++D++     + A +  E  
Sbjct: 190 SVMRDQLER----LRRLSCDLADVSAADEHALELDRRDEKIDDIVCSATAAAAPRFAERG 245

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +      +  +   DRQR+ QI + +L NA+  +  G +V +  AR+      SV + 
Sbjct: 246 VELTTALSPQPITAEVDRQRIEQILANLLENALRHTPSGGSVTVTLAREGDHLSVSVTDT 305

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVS 773
           G  IP D  +SVF+RF    HRG R  G GLGL+I  S    HGG +S
Sbjct: 306 GDGIPADQLESVFDRF----HRGDRSDGSGLGLTIARSLALAHGGDLS 349


>gi|163745134|ref|ZP_02152494.1| hypothetical protein OIHEL45_06085 [Oceanibulbus indolifex HEL-45]
 gi|161381952|gb|EDQ06361.1| hypothetical protein OIHEL45_06085 [Oceanibulbus indolifex HEL-45]
          Length = 468

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 2/162 (1%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L++ +AIFD+N  L   N + V+L  +   FL+  P+       LR + ++PE  N+K 
Sbjct: 213 HLSIGLAIFDRNGQLALFNPALVDLTALPAPFLSARPTMVSFFNQLRESRRMPEPKNYKN 272

Query: 374 WKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           W++ I  V  ++    +++TW L NGQT  +    +P G T ++ E++T +V L   +  
Sbjct: 273 WRQEIAEVIAAATDGRYQETWSLENGQTYSIRGRPHPDGATAFLIEDITAEVTLTRNFRA 332

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            ++     +D L +G AVF   G +   N A+R  WK + ++
Sbjct: 333 ELEQSQSLLDALEDGFAVFSASGVLTFCNAAYREHWKQDPDK 374


>gi|307330574|ref|ZP_07609714.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
 gi|306883730|gb|EFN14776.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
          Length = 556

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 12/242 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L ++   L   +     FV  +S+ELR+PLT I   +++L+  +  SL+   +  
Sbjct: 261 RAAERLQKRVAELSAREASSRRFVADMSHELRTPLTAITAVSEVLE-EEADSLDPMIAPA 319

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ + + +  L +LV +++++   DAG  +L    +   D+ ++V   I  +   + + +
Sbjct: 320 VQLVVSETRRLNDLVENLMEVTRFDAGTARLVLDDV---DVADQVTACIDARAWLDAVEL 376

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               D   G     D +RL  I + ++ NA+     GS V +    D  + +  V+++G 
Sbjct: 377 ----DAARGIVAPLDPRRLDVILANLIGNALKHG--GSPVRVSVRTDGDELLIKVRDHGP 430

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPED+   VF+RF  ++A R +  G GLGLSI     ++HGG +S ++S EG      R
Sbjct: 431 GIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAMENAHIHGGDISAANSPEGGAVFALR 490

Query: 788 IP 789
           +P
Sbjct: 491 LP 492


>gi|302392132|ref|YP_003827952.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204209|gb|ADL12887.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 617

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 4/231 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ D++K+ FV  VS+E R+PLT++    ++L    +G +N +Q + +E        L 
Sbjct: 387 LKEVDQMKSEFVSMVSHEFRTPLTSMNMGINMLLEENIGEINEEQKELLEVAKEDCEHLN 446

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           NLV+D+LDL+ +++G + L +  + +  +     Q   T+  E  + +       L  + 
Sbjct: 447 NLVDDLLDLSKIESGEIDLEFDAVAVKKIFEASIQPFMTQAEEQGVDLITEETNGLEVY- 505

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  ++  + + ++ NA+ ++ KG  + L A +       SV + G  IP++    +F +
Sbjct: 506 ADFNKITWVITNLIGNALRYTGKGDKIKLLADKKGHKMHISVADTGEGIPKEYRHKIFKK 565

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG-VTTINCRIP 789
           FV     + +  G GLGL+I +  I  HGG + + S   EG + T   ++P
Sbjct: 566 FVRVGDDKDEETGTGLGLAISKEIIEAHGGRIWVESEVGEGSIFTFTLKLP 616


>gi|294141952|ref|YP_003557930.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
 gi|293328421|dbj|BAJ03152.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
          Length = 931

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L+S Q  YV  I  S
Sbjct: 286 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHSSQQDYVNTIEKS 340

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +T LL ++NDILD + ++AG M L      L + L++    ++    E +I + V  D  
Sbjct: 341 ATNLLGIINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSAREKDIELVVDIDQS 400

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIP 731
           +      D  R  QI + ++ NA+ F+  GS      + ++  D  +    V + G  I 
Sbjct: 401 IPEDLSGDAMRFSQIITNLVGNAIKFTDIGSVHLRLQLTESTNDKVNLRCEVIDTGIGID 460

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           E   + +F  F        RR  G GLGL I +  IN  GG +   S
Sbjct: 461 ESQQELLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCHS 507


>gi|255523429|ref|ZP_05390398.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296184711|ref|ZP_06853122.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255512887|gb|EET89158.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296050493|gb|EFG89916.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 798

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 131/260 (50%), Gaps = 13/260 (5%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           AQ ++ F++VT  + A+  +        K  ++   F+ ++S+EL++PL  I     LL+
Sbjct: 514 AQVVVIFMDVTQEIEAKLKM-------EKTLKMHEQFLTNISHELKTPLNVIFSSAQLLE 566

Query: 596 TS-KLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
              K  S+   + + ++   +I  +   L+ L+ +I+DL+ +++G  KLN S   +  ++
Sbjct: 567 LYLKNKSVEENKEKIIKDTYFIRQNCYRLIKLIGNIIDLSKIESGFFKLNLSNENIVSVV 626

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            ++ QS++  +   ++ I   +D +      D  ++ ++   ++SNA+ FS  G  + + 
Sbjct: 627 EDIVQSVSEYVESKDLSIIFDTDVEEKIIACDPDKIERVVLNLISNAIKFSDPGDEIYVN 686

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
            A  N     SVK+NG  I ++   ++F RF  V  +      G G+GL +V+S + LHG
Sbjct: 687 IADKNETVEISVKDNGIGIDKNHLNAIFERFNQVDKSFTRNAEGSGIGLCLVKSIVELHG 746

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +S  S     +T    +P
Sbjct: 747 GKISAESKLGEGSTFKIELP 766


>gi|288941099|ref|YP_003443339.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896471|gb|ADC62307.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1650

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            LTE       A++ K++F+ ++S+E+R+P+  ++GF  LL+     +L+   +  V  I 
Sbjct: 1029 LTEARARAEAANQAKSAFLANMSHEIRTPMNAVLGFCYLLEQH---ALDPASADLVRKIH 1085

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVIS 673
             +   LL+L+NDILD + ++AG ++L  +   L++LL+ +   +     +  +  I    
Sbjct: 1086 NAGQALLDLINDILDFSKIEAGRLELEAAPFRLSELLDTLAGIMTAAAGDKPLELILTPP 1145

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729
            +  +   + D  RL Q+   +L NA+ F+++G   +    L    D  +  F+V++ G  
Sbjct: 1146 EADIEGLIGDAGRLRQVLINLLGNAIKFTARGEVELRIECLAEHDDAVELRFAVRDTGIG 1205

Query: 730  IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I  +  + +F  F        RR  G GLGLSI    + L GG + I S
Sbjct: 1206 IDPESQERLFQPFTQADVSTTRRFGGTGLGLSISRQLVRLMGGTLEIES 1254


>gi|223983039|ref|ZP_03633243.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM
            12042]
 gi|223964989|gb|EEF69297.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM
            12042]
          Length = 1500

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 133/248 (53%), Gaps = 13/248 (5%)

Query: 540  LTFVNVTDSVRAERALTEKNE-ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
            L   +VT+ + AER   +  E AL +A+E    K+ F+  +S+++R+P+  I+G T  L 
Sbjct: 1081 LVRADVTEMLAAERRTKKTLENALIQAEEANRAKSDFLSAMSHDIRTPMNAIMGMT-ALA 1139

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            T+ LG  + + +  ++ I+ SS  LL+L+ND+LD++ ++   + LN   + + +++ ++ 
Sbjct: 1140 TAHLGD-SQRVADCLKKITYSSKHLLSLINDVLDMSKIERSQITLNRVRLRMPEVIEQLA 1198

Query: 656  QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV------ 708
              +  +     I++ + ++  +   F  D  R+ QI   ILSNA+ F+ +G T+      
Sbjct: 1199 AIMGPQARIKAIQLNISANQIEHTVFYGDALRINQILINILSNAVKFTPEGGTIDFIVEE 1258

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            I  + ++   + F++++ G  I     + +F+ F  ++  GQ  G GLGLSI    I L 
Sbjct: 1259 IPGSDQNQVRYRFTIRDTGIGIEPQFLEHLFDPFARSSQVGQIEGTGLGLSITRGLIELM 1318

Query: 769  GGHVSISS 776
             G + + S
Sbjct: 1319 NGSLQVES 1326


>gi|172035572|ref|YP_001802073.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697026|gb|ACB50007.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 908

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 131/266 (49%), Gaps = 21/266 (7%)

Query: 542 FVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           F ++ D  R  A++  +EK  AL +    K+ F+  + +E+R+PL  + G T LL  ++L
Sbjct: 238 FQDLQDLQRKMAQQQASEK--ALEELSRAKSEFLAMIGHEIRTPLNAVTGMTGLLLDTEL 295

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              N +Q ++V  I  S   LL ++N+ILD + ++A  ++L      L   + ++ +   
Sbjct: 296 ---NDQQQEFVSIIRNSGENLLTMINNILDFSKIEAQKLELEEEAFELGPCIEDILRLFV 352

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKA 712
           ++  + N+ +  + +    S  V D  RL QI + ++ NA+ F+  G  VI      +K+
Sbjct: 353 SQASKKNLELAYLVESNTPSAIVGDSTRLKQILANLIGNAVKFTDNGEVVIYVNGTPIKS 412

Query: 713 ARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
             +       +  F+VK+ G  IP D C  +F  F        RR  G GLGL+I +   
Sbjct: 413 TENEQENPTYELRFAVKDTGIGIPPDRCHRLFQPFSQVDASTTRRYGGTGLGLAISKRLS 472

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L GG + + S++   +T N  I +K
Sbjct: 473 ELMGGGMWVHSTEGKGSTFNFTIQAK 498


>gi|219849498|ref|YP_002463931.1| response regulator receiver sensor signal transduction histidine
           kinase [Chloroflexus aggregans DSM 9485]
 gi|219543757|gb|ACL25495.1| response regulator receiver sensor signal transduction histidine
           kinase [Chloroflexus aggregans DSM 9485]
          Length = 392

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 139/307 (45%), Gaps = 22/307 (7%)

Query: 475 SPGTHIRNIAATCSRYYNES-DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           SPG+  R + A C  Y ++  D   L A I    D  R+ L  T+E  ++ +  Y+    
Sbjct: 89  SPGSRERALVAGCDGYLSKPIDARALPAQIAEFIDGRRERLPATME--TELLRSYN---- 142

Query: 534 PNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                      + + + A  R LT  N  L+  D +K+ F+  +S+ELR+PLT+++G+ +
Sbjct: 143 ---------QKLVERLEARVRELTIANAQLQDLDRMKDQFLATLSHELRTPLTSLLGYLE 193

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L     LG LN +Q + +  +  S  IL   +N++L    V +     ++  +   D+L 
Sbjct: 194 LFDRGMLGPLNPQQEEAIRVMRRSGEILARQLNNLLYFQEVRS--RSFSFVQLQPLDILR 251

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +  +   +  +  ++  V+   ++     DR    Q+   +L NA  ++  G  V L  
Sbjct: 252 PLIAAARERAAQAQLQFDVVLS-EIKPIEIDRSAFEQMVRNLLDNAFQYTPPGGRVRLIV 310

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
             +    I  V++ G  I     + +F  F    H   R   G GLGL+IV   ++ HGG
Sbjct: 311 RDEPTRLIIRVEDTGIGIAPAEHEKIFLPFYQVDHSLARGYAGSGLGLAIVRHIVDAHGG 370

Query: 771 HVSISSS 777
            +++ S+
Sbjct: 371 QIALRSA 377


>gi|332142374|ref|YP_004428112.1| histidine kinase response regulator hybrid protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552396|gb|AEA99114.1| histidine kinase response regulator hybrid protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 542

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 124/251 (49%), Gaps = 8/251 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSL 602
           ++ SV A   L  KN  L +  + ++ F+ +VS+E+R+PL  I  F+ LL+    KL  L
Sbjct: 150 LSKSVVAHLELKRKNRELERTSQFRSDFLSYVSHEIRTPLNAINTFSRLLEGEAQKL-KL 208

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
               +  + +++ S   LL +VN +LD+  ++AG M++    +  +D    +      + 
Sbjct: 209 PESFTTPLSHVTQSGERLLEIVNSVLDIKQIEAGKMRVMPRAVSTHDFFTHLFSLTKIRA 268

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +  I      D ++  +   D  +  Q+   +LSNA+ F++ G +V  +    N   IF
Sbjct: 269 EDGGITFTSTIDSRVPDTLFFDDTKFGQVSLNLLSNAIKFTNPGKSVNAQVKYKNDKLIF 328

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  I E+  K +F  F  + NAH  Q  G GLGL+I +  I L  G + +SS   
Sbjct: 329 NVIDQGIGISEEDQKRLFTPFERMENAH--QISGTGLGLNISKRLIELMDGTIKVSSKVN 386

Query: 780 GVTTINCRIPS 790
             T I+  +PS
Sbjct: 387 EGTRISVTLPS 397


>gi|323491062|ref|ZP_08096254.1| aerobic respiration control sensor protein ArcB [Vibrio
           brasiliensis LMG 20546]
 gi|323314726|gb|EGA67798.1| aerobic respiration control sensor protein ArcB [Vibrio
           brasiliensis LMG 20546]
          Length = 781

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   L  +Q  +
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---LTEEQRNH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  ST+   + + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELFPSTLNFEEFVAEMESISALMASQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKN 725
            +    +L S +  D  RL Q+   ++SNAM F+ +G  V+  ++    ++      +++
Sbjct: 381 DLERLSELPSAIEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSSEVTDEHAHITMEIED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +G  IPE   + +F  +    S        G G+GL++ +  IN+  G +++SS +
Sbjct: 441 SGIGIPEAELEKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITVSSEE 496


>gi|225571364|ref|ZP_03780360.1| hypothetical protein CLOHYLEM_07462 [Clostridium hylemonae DSM
           15053]
 gi|225159840|gb|EEG72459.1| hypothetical protein CLOHYLEM_07462 [Clostridium hylemonae DSM
           15053]
          Length = 471

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 125/233 (53%), Gaps = 7/233 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L   +  L+  ++ +  FV +VS++ RSPLT+I G+ + +    + +    Q +Y++ I
Sbjct: 231 SLNYMSSQLKDMEDYQKKFVANVSHDFRSPLTSIKGYVEAMTDGTIPA--ELQEKYLKII 288

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L +L  D+L L   D   + LN     +++++  V  S      +  + I++I 
Sbjct: 289 LFETERLTDLTQDLLTLNEFDTQNLLLNKEPFDIHEIIKNVAASFEGTCTQKKVSIELIF 348

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPE 732
             K     AD++++ Q+   +L NA+ FS   S V ++   + GD +F SVK+ G  IP 
Sbjct: 349 ATKHLFVNADKRKIQQVLYNLLDNAIKFSDSESAVTIETT-ERGDKVFTSVKDYGIGIPR 407

Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +    ++ RF  ++  RG+ ++G GLGL+IV+  I  HG +V++ S+ EGV T
Sbjct: 408 NALNKIWERFYKTDLSRGKDKKGTGLGLAIVKEAIQAHGENVNVVST-EGVGT 459


>gi|297201978|ref|ZP_06919375.1| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
 gi|197712641|gb|EDY56675.1| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
          Length = 525

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 14/244 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL---GSLNSKQS 607
           A  AL ++ E +   D+    FV  +S+ELR+PLT I   T++L+       GS++    
Sbjct: 266 AAEALEKRVEDMSARDDASRRFVADMSHELRTPLTAITAVTEILEEELEAESGSMDPMIE 325

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             V  + + +  L +LV +++++   DAG  +L    +   D+ +++   I  +   + +
Sbjct: 326 PAVRLVVSETRRLNSLVENLMEVTRFDAGTARLVLDDV---DVADQITACIDARAWLDAV 382

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            +    D + G     D +RL  I + ++ NA+        V ++AA D  + +  V+++
Sbjct: 383 EL----DAERGIHARLDPRRLDVILANLIGNALKHGGSPVRVAVRAADD--EVVIGVRDH 436

Query: 727 GSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  IPED+   VF+RF  ++A R +  G GLGLSI     ++HGG ++ ++S +G     
Sbjct: 437 GPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALENAHIHGGEITAANSPDGGAVFT 496

Query: 786 CRIP 789
            RIP
Sbjct: 497 LRIP 500


>gi|196041231|ref|ZP_03108526.1| sensory box histidine kinase [Bacillus cereus NVH0597-99]
 gi|196027939|gb|EDX66551.1| sensory box histidine kinase [Bacillus cereus NVH0597-99]
          Length = 288

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 134/246 (54%), Gaps = 13/246 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ ++KN  + ++S++LR+P+T++IG+TDLL  + L S   +
Sbjct: 41  TNVNRMVKSLKEAIENEKKSQKMKNEMISNISHDLRTPVTSLIGYTDLLGNN-LHSNVEE 99

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L N V+D+L+   ++   ++L+ S + +   + ++      ++ + 
Sbjct: 100 CEQYVNVLKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPQLDDA 159

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           ++   +  + +L     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN
Sbjct: 160 DMSFCIKGNKEL-HVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKN 218

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD- 778
            G  IP++    VF +F    +RG++       G G+GL+I  S   LH G +++ S++ 
Sbjct: 219 FGQCIPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEK 274

Query: 779 EGVTTI 784
           E V TI
Sbjct: 275 ETVFTI 280


>gi|4164161|dbj|BAA37137.1| ethylene response sensor [Passiflora edulis]
          Length = 637

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 131/261 (50%), Gaps = 36/261 (13%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL+ A          +N F+  +++E+R+P+  II  +        
Sbjct: 316 ESMRARDQLMEQNVALKSARREAEMAIHARNDFLAVMNHEMRTPMHAIIALS---SLLLE 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E +  SS +L  L ND+LDL+ ++ G ++L+ +   L+D+  EV   I 
Sbjct: 373 TELTPEQRAMIETVLKSSNLLATLTNDVLDLSRLEDGSLELDVAMFNLHDIFREVINLIK 432

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
                  + + + +     SF V D +RL+Q    ++ NA+ F+ +GS  I+ +      
Sbjct: 433 PIASVKKLALTLTTTPDPPSFAVGDEKRLMQTILNVVGNAVKFTKEGSVSIIASVAKPDS 492

Query: 714 -RD-----------NGDFIF--SVKNNGSSI-PEDMCKSVFNRFV---SNAHRGQRRGVG 755
            RD           +G F     VK++G  I P+D+   +F +F+   S ++RG   G G
Sbjct: 493 LRDWRPPEFYPISTDGHFYLRIQVKDSGCGILPQDI-PLLFTKFIRPQSGSNRGS-SGAG 550

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I + F++L GGH+ I S
Sbjct: 551 LGLAICKRFVSLMGGHIWIES 571


>gi|323495155|ref|ZP_08100240.1| signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323310595|gb|EGA63774.1| signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 810

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 118/225 (52%), Gaps = 12/225 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K +A  KA   K++F+  +S+E+R+P+  ++G   +L+ +    LN +Q ++++ +  S 
Sbjct: 345 KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILQRT---DLNEEQRKHLKTLYESG 398

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             ++ L+N+ILD + V+ G ++L Y+   L  ++  V     T   E  ++ KV S+   
Sbjct: 399 EHMMTLLNEILDFSKVEQGHLELEYTPFPLESIIGSVNSVYYTLCAEKGLQFKVYSEVPT 458

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSIPED 733
              +  D+ RL QI   +L+NA+ F+S+G   V  K  + +G    +  V++ G  I +D
Sbjct: 459 TRWYRGDKARLRQILFNLLNNAVKFTSRGYVEVYFKEQQRHGRNYLLIRVRDTGIGIAKD 518

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             + VF  F        RR  G GLGL+IV+    L  G V ++S
Sbjct: 519 AQQKVFKPFEQAESSTTRRFGGTGLGLAIVKQLCELMEGEVKLAS 563


>gi|302188965|ref|ZP_07265638.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 595

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E K     +  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 PNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|300936299|ref|ZP_07151231.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300458551|gb|EFK22044.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 918

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  +++ + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLKLTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|269966413|ref|ZP_06180498.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
 gi|269829000|gb|EEZ83249.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
          Length = 726

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 134/250 (53%), Gaps = 18/250 (7%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+S
Sbjct: 355 VEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSS 411

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661
            Q + V+ I +SS  LL L+NDILDL+ +++G ++L   ++V  D+   V QS+    +K
Sbjct: 412 HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLEL---SLVEADIREVVYQSMILFQSK 468

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARD 715
                +++ + +++      + D  R+ Q+ + ++SNA+ F+  G   +  +      ++
Sbjct: 469 ATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTESGHVCVDVSYEELPEKE 528

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G   F V++ G  I +D   ++F  F        R+  G GLGL+I    +++ GG + 
Sbjct: 529 RGVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSMMGGKL- 587

Query: 774 ISSSDEGVTT 783
           +++S +GV T
Sbjct: 588 VATSTKGVGT 597


>gi|295402149|ref|ZP_06812108.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112731|ref|YP_003991047.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294975832|gb|EFG51451.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217832|gb|ADP76436.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 609

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K D  +  FV +VS+ELR+PLT +  + + L     G+   K    +++E I   +  ++
Sbjct: 372 KIDRERREFVANVSHELRTPLTTMKSYLEALAE---GAWQDKAIAPRFIEVIQTETERMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+L L+ +D+   KLN S +  ++  ++V         EN   ++ I   K   F+
Sbjct: 429 RLVNDLLQLSKLDSKDYKLNKSWVNFSEYFHKVIDRFELTKSENITFVRKIP--KEAIFI 486

Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  ++ Q+   I+SNA+ +S +G  +  +      + I SV + G  IP+     VF 
Sbjct: 487 EIDEDKITQVLDNIISNAIKYSPQGGKITFRVRELADEIIVSVSDEGVGIPKADLAKVFE 546

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A   +  G GLGL+I +  +  HGG +   S +   TTI   +P
Sbjct: 547 RFYRVDKARSRKLGGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLP 597


>gi|228899003|ref|ZP_04063277.1| hypothetical protein bthur0014_2320 [Bacillus thuringiensis IBL
           4222]
 gi|228963366|ref|ZP_04124528.1| hypothetical protein bthur0004_2500 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796326|gb|EEM43772.1| hypothetical protein bthur0004_2500 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860637|gb|EEN05023.1| hypothetical protein bthur0014_2320 [Bacillus thuringiensis IBL
           4222]
          Length = 314

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQ-EYLKILYMKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++V+        +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPESTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I S ++ NA+ +   G  V ++    + ++   + + G  IP+   ++VF R 
Sbjct: 199 DHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDLQNVFERM 258

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    T     IP
Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIP 307


>gi|229010081|ref|ZP_04167295.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048]
 gi|228751214|gb|EEM01026.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048]
          Length = 421

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+   SK  +   ++ +Y+  I   S  + NLV D+ 
Sbjct: 200 RSEFLASVAHELRTPLTYVRGYADI--ASKENTPPEQRLRYLSIIKDESDYITNLVQDLF 257

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +    + L+  L  + + I     E  I++       L     D QR  
Sbjct: 258 SLAQMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSL-LVKLDEQRFE 316

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+ + IL+NA   S + S + +    ++     ++++ G  IP +    +F+RF  V  A
Sbjct: 317 QVMANILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKA 376

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 377 RSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLPS 420


>gi|119351155|gb|ABL63472.1| ethylene receptor [Coffea liberica var. dewevrei]
          Length = 740

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 130/264 (49%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL +A          +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 314 ESMRARDLLMEQNVALDRARREAETAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+     L+ L  EV   I 
Sbjct: 374 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIEPFDLHGLFKEVLNLIK 430

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  + + D +RL+QI   ++ NA+ FS +G   I         
Sbjct: 431 PIASVKKLFVTLSMSSDLPEYAIGDEKRLMQIMLNVVGNAVKFSREGGISISASVAKSDS 490

Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+  R         DN  ++   VK+ GS I P+D+ K +F +F  +     +   G GL
Sbjct: 491 LRDPRAPDFFPVLSDNHFYLRVQVKDTGSGISPQDIPK-LFTKFAQSQSLAAKNSGGSGL 549

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+N   GH+ + S   G
Sbjct: 550 GLAICKRFVNRMDGHIWLESEGLG 573


>gi|330505538|ref|YP_004382407.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919824|gb|AEB60655.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 962

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +++EA ++ + +K+ FV  VS+ELR+PLT I G   L+    LG +       +    A+
Sbjct: 473 DQSEA-KRIERLKSEFVSTVSHELRTPLTAIAGSLGLINGGALGPVPEGMRTMLSIAQAN 531

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L +L+ND+LD+  ++AG M+ +     L   L +   S         I+++++ D  
Sbjct: 532 SQRLSHLINDLLDMDKLEAGKMQFDLQPCPLVAQLQDALDSNQAYADRQQIQLRLL-DCP 590

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  RL Q+ +  +SNA+ +S  G+ V L+A R +      V + G  I  +  +
Sbjct: 591 PARVRIDAIRLQQVLANFISNAVKYSPPGAEVHLRAERRDTRVRVEVIDQGPGIAGEFRQ 650

Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            +F++F S A     R   G GLGL+I +  I   GG +   S
Sbjct: 651 RIFSKF-SQADASDSRSKGGTGLGLAISKELIERMGGQIGFDS 692


>gi|206563353|ref|YP_002234116.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039393|emb|CAR55359.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 660

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 130/278 (46%), Gaps = 18/278 (6%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN--EALRKA----------DEIKNSFVQH 575
           ++  P+ +AQ   T +++T     ER   E++   +LR A          + +K+  +  
Sbjct: 230 FAASPIVDAQGNCTGLSLTLREAGERRRDERHHLRSLRGARDARVQADASNRLKDELLAT 289

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PL  I G+ ++L+ +          Q V  I  S+  L ++V D+LD +++  
Sbjct: 290 VSHELRTPLNVIYGWVEVLRNADGPGF---VQQAVAAIDRSARSLSHMVADLLDASSLAT 346

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++L    + L  ++ +  + +      N + +            AD +RL Q+ S +L
Sbjct: 347 GRLRLERVPVDLVRIVRDAARELDATAQANGLVLSTEYAMPACVIPADGERLRQVLSNLL 406

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRG 753
           SNA+ F+  G  + +   R       SV + G  I  +    +F  F     A    +RG
Sbjct: 407 SNAIKFTPPGGRINVSLTRAGERVRLSVSDTGQGIAPERLPHLFETFSRPEGAFTSPKRG 466

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPS 790
           +GLGLSIV +   LHGG V  +S+  G  TT+   +P+
Sbjct: 467 LGLGLSIVRNIAQLHGGEVVATSAGAGRGTTVTVTLPA 504


>gi|22095659|sp|Q41342|ETR1_SOLLC RecName: Full=Ethylene receptor 1; Short=LeETR1
 gi|1163081|gb|AAA85479.1| ETR1 homolog [Solanum lycopersicum]
          Length = 754

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 130/264 (49%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  + LL+ +  
Sbjct: 329 ESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 386

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  EV   I 
Sbjct: 387 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVHSLIK 445

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  +V  D +RL+QI   ++ NA+ FS +G+  I         
Sbjct: 446 PIASVKKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKEGNVSISAFVAKSDS 505

Query: 710 LKAARDNGDFIFS----------VKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+  R    F             +K+ G  I P+D+  ++F++F  +         G GL
Sbjct: 506 LRDPRAPEFFAVPSENHFYLRVQIKDTGIGITPQDI-PNLFSKFTQSQALATTNSGGTGL 564

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 565 GLAICKRFVNLMEGHIWIESEGLG 588


>gi|148262094|ref|YP_001228800.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146395594|gb|ABQ24227.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
          Length = 508

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 113/236 (47%), Gaps = 25/236 (10%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+  ++ K  FV  +S++L++P+T ++G  DL++  +LG +N+ Q +Y+E    S   ++
Sbjct: 253 LKALEQEKEDFVSMLSHDLKAPITAVVGSVDLVREGRLGPVNADQREYLESSMESCAEMV 312

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +++ +L +   +AG M L++     + L+        T      I +    D  L +  
Sbjct: 313 EMIDTLLGVHKFEAGKMLLHFKEEAPHQLIQRTLTRYITVAKRAQIHLFATVDENLPTIS 372

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---------------------DNGD-- 718
           ADR    ++   ++SNA+ F+ +G  + + AA                        GD  
Sbjct: 373 ADRATFSRLLGNLISNALKFTPEGGEIEVSAAAIEDISAIKDRIPRQSYPVEKLSGGDRF 432

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
              +V+++G  IP +  + +F+RFV   +R  G+  G GLGL+     ++ H G++
Sbjct: 433 LQITVRDSGVGIPPEALEGIFDRFVQAKNRRLGKSSGTGLGLTFCRKVMDAHKGYI 488


>gi|330901517|gb|EGH32936.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 573

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 319 LLTYSMTPVSHTKGHVLGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 368

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 369 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 428

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E K     +  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 429 PCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 488

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 489 PNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 546

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 547 IVQLHGGRMGVYSRPGQGTQFYMALP 572


>gi|315920397|ref|ZP_07916637.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694272|gb|EFS31107.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1308

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I 
Sbjct: 772 LREK-QYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIH 828

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D
Sbjct: 829 KNAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHAD 888

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      DR ++ ++ + +LSNA  ++S G T+ ++ A    + +FSV +NG+ I E+ 
Sbjct: 889 CEQCLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEED 948

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +F RF    + GQ  G G+GL++ +  +  H G +++ S
Sbjct: 949 YVKIFERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVES 990


>gi|310828175|ref|YP_003960532.1| histidine kinase [Eubacterium limosum KIST612]
 gi|308739909|gb|ADO37569.1| histidine kinase [Eubacterium limosum KIST612]
          Length = 505

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 14/240 (5%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--- 612
           +E++E  +K   ++ +F  ++S+EL++P+T + G  + L     G + +   Q   Y   
Sbjct: 273 SEEHERFQK---MQQTFFSNISHELKTPVTVLCGSLEALA----GGVVTDPDQVAAYHQE 325

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + A S  L  LVND+LDL+ +     +LN   + L D+++EV++S      E  + +   
Sbjct: 326 MYAESLALKRLVNDLLDLSRLQNAEFRLNLERVNLCDIISEVRRSAQNMAKEKELTVTTE 385

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  L     D  RL Q+    +SNA+ FS  G  + ++ + +    I ++ ++G  I  
Sbjct: 386 MDTGLYFMQGDYLRLRQLLMIAMSNAIKFSPGGGQIEMRLSEN----ILTISDHGCGISA 441

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  K +F RF          G GLGL I +     HG  ++++S +   TT+   +P +E
Sbjct: 442 EEQKHIFERFYKTLSEENAEGTGLGLPIAKEIAERHGIGLTVTSEEGQGTTVTLELPGRE 501


>gi|255526178|ref|ZP_05393098.1| multi-sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296185072|ref|ZP_06853482.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255510161|gb|EET86481.1| multi-sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296049906|gb|EFG89330.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 606

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 117/236 (49%), Gaps = 6/236 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASS 617
           +++ D IK  F  ++S+ELR+P+  I     +    LK          + +Y+  +  + 
Sbjct: 338 IKEYDRIKTDFFANISHELRTPINVIFSAIQVHKLKLKDCNFNDNFPDKYKYINIMEQNC 397

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVN+++D+  +D+G + +N     +  L+ ++  S+A  +    + +   +D + 
Sbjct: 398 YRLLRLVNNLIDITKIDSGYLVINEINCDIVSLIEDITLSVADYIENKGLSVVFDTDIEE 457

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D +++ +I   +LSNA+ F+ +G ++ +            VK+ G  IP++   S
Sbjct: 458 KIIACDPEKMERIILNLLSNAVKFTLRGGSIFVNIENGTESICIRVKDTGKGIPKEKLDS 517

Query: 738 VFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RFV    +   +  G G+GLS+V++ + LH G +S++S +   +     IP K
Sbjct: 518 IFERFVQVDKSLTRENEGSGIGLSLVKALVELHEGTISVNSKEGYGSEFIIHIPCK 573


>gi|153216852|ref|ZP_01950628.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 1587]
 gi|124114109|gb|EAY32929.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 1587]
          Length = 1146

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANLDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIEVKSEFEQGTQIQVNLP 841


>gi|49183301|ref|YP_026553.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49177228|gb|AAT52604.1| sensor histidine kinase, putative [Bacillus anthracis str. Sterne]
          Length = 340

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 118/229 (51%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 106 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 164

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI+++V+        +A
Sbjct: 165 LVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPESTCPIIA 224

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   L++I   ++ NA+ +   G T+ ++    +  +   + + G  IP+   ++VF R 
Sbjct: 225 DHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDLQNVFERM 284

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +      G GLGLSI ++ +  +GGH+ + S     TT    IP
Sbjct: 285 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIP 333


>gi|78048722|ref|YP_364897.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037152|emb|CAJ24897.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1200

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+ KQ  Y E I  + 
Sbjct: 824  KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDLKQRSYTESIRRAG 880

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G L
Sbjct: 881  AHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGLL 939

Query: 678  GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
            G   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  + 
Sbjct: 940  GDITASGDCTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 999

Query: 735  CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F RF   +  R   R  G GLGL+I +      GG + + S
Sbjct: 1000 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVIS 1044


>gi|309805443|ref|ZP_07699490.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165261|gb|EFO67497.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 09V1-c]
          Length = 340

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 136/255 (53%), Gaps = 14/255 (5%)

Query: 544 NVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +V DS+ A       A++E+    +  DE+    + ++S++LR+PLT+IIG+  LLK  +
Sbjct: 80  DVVDSINALVDSTCMAISEEKAVEKSKDEL----IANLSHDLRTPLTSIIGYMSLLKMHQ 135

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQS 657
              L +++ +Y+  +   S  + ++ ND+ + AT++ +   KL    I ++ L+ ++   
Sbjct: 136 NSMLPAQRQEYLNIVFDKSLQMKSMTNDLFEYATLNFSHDKKLELEQIKISSLIEQIAAG 195

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A +  +  I IK   + +      D ++++++F+ ++SNA+ +      + +   + + 
Sbjct: 196 FALEAEKKQIDIKTSCEPQDLEIAVDVKKIVRMFNNLISNAVKYGVGAKNIYVSVKKISN 255

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D +   V N+G +IP+D    +F+RF  V  +   +  G GLGL+I ++ + +H G +  
Sbjct: 256 DMVQIIVSNDGQAIPQDALGKLFDRFYRVEESRSPKTGGSGLGLAITKTIVEMHHGTI-F 314

Query: 775 SSSDEGVTTINCRIP 789
            +S++ +T+    +P
Sbjct: 315 CTSNQKLTSFIIDLP 329


>gi|300119330|ref|ZP_07057008.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298723285|gb|EFI64049.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 385

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQETNIDCRPFFPSKKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A   N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGNDGDYIDITAYESNNMIAIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 375


>gi|290957942|ref|YP_003489124.1| two component system sensor kinase [Streptomyces scabiei 87.22]
 gi|260647468|emb|CBG70573.1| two component system sensor kinase [Streptomyces scabiei 87.22]
          Length = 513

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 13/245 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK---TSKLGSLNSKQS 607
           A  +L +K + +   +E    FV  +S+ELR+PLT I   T++L+    +  GSL+    
Sbjct: 251 AAESLEKKVDDMSAREEASRRFVADMSHELRTPLTAITAVTEVLEEELDADTGSLDPMIE 310

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             V  + + +  L  LV +++++   DAG  +L    +   D+ +++   I  +   + +
Sbjct: 311 PAVRLVVSETQRLNTLVENLMEVTRFDAGTARLVLDDV---DIADQITACIDARAWLDAV 367

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKN 725
            +    D + G  +  D +RL  I + ++ NA+        V ++    N  D +  V++
Sbjct: 368 DL----DAERGIIIKLDPRRLDVILANLIGNALKHGGSPVRVRVREGDANDADLLIEVRD 423

Query: 726 NGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +G  IPED+   VF+RF  ++A R +  G GLGLSI     ++HGG ++ ++S EG    
Sbjct: 424 HGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALENAHIHGGDITAANSPEGGAVF 483

Query: 785 NCRIP 789
             R+P
Sbjct: 484 TLRLP 488


>gi|302546427|ref|ZP_07298769.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302464045|gb|EFL27138.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1432

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 18/248 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R+   L EK   L  A + K+ F+ ++S+ELR+PL +++    LL  +    L+ ++ Q+
Sbjct: 900  RSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNADQRLSPQEVQF 959

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +      +  +  
Sbjct: 960  ATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLMKLLDYVHATFRPLAIDRGLSF 1019

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
            ++ + +       +D QR+ QI   +LSNA+ F+  G  V L+  R  G           
Sbjct: 1020 EIAVGEDVPRELYSDEQRIQQILRNLLSNALKFTPSGG-VKLRVERAVGTEFQEETLRDA 1078

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 FSVK+ G  I  +    +F  F  +     R+  G GLGLSI      + GG + 
Sbjct: 1079 DAVVAFSVKDTGIGIASEKLPVIFEAFQQSDGTTSRKYGGTGLGLSISREIAGMLGGRI- 1137

Query: 774  ISSSDEGV 781
            I+ S++GV
Sbjct: 1138 IAESEQGV 1145


>gi|160885605|ref|ZP_02066608.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483]
 gi|156109227|gb|EDO10972.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483]
          Length = 1341

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L EK + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I 
Sbjct: 805  LREK-QYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIH 861

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D
Sbjct: 862  KNAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHAD 921

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +      DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+ 
Sbjct: 922  CEQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEED 981

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF    + GQ  G G+GL++ +  +  H G +++ S
Sbjct: 982  YVKIFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVES 1023


>gi|153819791|ref|ZP_01972458.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae NCTC 8457]
 gi|126509670|gb|EAZ72264.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae NCTC 8457]
          Length = 868

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 306 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 365

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 366 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 421

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 422 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 480

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 481 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 540

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 541 LMNGKIEVKSEFEQGTQIQVNLP 563


>gi|20809032|ref|NP_624203.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517703|gb|AAM25807.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 577

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 4/228 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D+++  FV +VS+ELR+PL  I  + + L  + + +  SK+  ++  I   +  +  L
Sbjct: 347 KLDQMRKEFVANVSHELRTPLATIKSYVETLLYNDVDTEYSKK--FLRIIETETDRMTRL 404

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V D+L L+ +D+    L       N+++  V  S++ +  +    + +     L     D
Sbjct: 405 VKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVD 464

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           + ++ Q+   I++NA+ ++ +G  + +  A D     F+VK+NG  IP++    +F RF 
Sbjct: 465 KDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEGVTFTVKDNGIGIPKEDLPRIFERFY 524

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            V  A   +  G GLGLSIV+  + LH G V I S     T +  ++P
Sbjct: 525 RVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLP 572


>gi|21244398|ref|NP_643980.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110058|gb|AAM38516.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 578

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 118/228 (51%), Gaps = 11/228 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +AL   D  ++ F+  +S+ELR+PL  +I    L++T ++    ++Q + ++ ++A++T 
Sbjct: 198 QALASRDA-QSHFISTMSHELRTPLNAVINCAQLIETEQM---PAQQRELLQSVTANATA 253

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L + VN++LD+A++D G ++L+   + L D++  VK   AT      + + V  D     
Sbjct: 254 LRHRVNEVLDVASIDGGRLQLHRKPLNLLDVVTTVKAVCATAASSKGVTLDVRVDSPQAP 313

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDM 734
            V  D  R+ Q+ S ++ NA+ F+  G TV L       ++      +V + G  +P+D 
Sbjct: 314 HVMGDEGRIEQVISNLVINAIKFTPAGGTVDLLIDATQVQERWSIAVTVTDTGIGVPDDQ 373

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              +F  F  +S        GVGLGL I  S  +  GG +++S +  G
Sbjct: 374 KAYIFTPFTQLSTGFSRVEGGVGLGLYIALSVSDAMGGSLTVSDNPAG 421


>gi|325911619|ref|ZP_08174027.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners UPII 143-D]
 gi|325476605|gb|EGC79763.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners UPII 143-D]
          Length = 393

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 136/255 (53%), Gaps = 14/255 (5%)

Query: 544 NVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +V DS+ A       A++E+    +  DE+    + ++S++LR+PLT+IIG+  LLK  +
Sbjct: 133 DVVDSINALVDSTCMAISEEKAVEKSKDEL----IANLSHDLRTPLTSIIGYMSLLKMHQ 188

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQS 657
              L +++ +Y+  +   S  + ++ ND+ + AT++ +   KL    I ++ L+ ++   
Sbjct: 189 NSMLPAQRQEYLNIVFDKSLQMKSMTNDLFEYATLNFSHDKKLELEQIKISSLIEQIAAG 248

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A +  +  I IK   + +      D ++++++F+ ++SNA+ +      + +   + + 
Sbjct: 249 FALEAEKKQIDIKTSCEPQDLEIAVDVKKIVRMFNNLISNAVKYGVGAKNIYVSVKKISN 308

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D +   V N+G +IP+D    +F+RF  V  +   +  G GLGL+I ++ + +H G +  
Sbjct: 309 DMVQIIVSNDGQAIPQDALGKLFDRFYRVEESRSPKTGGSGLGLAITKTIVEMHHG-IIF 367

Query: 775 SSSDEGVTTINCRIP 789
            +S++ +T+    +P
Sbjct: 368 CTSNQKLTSFIIDLP 382


>gi|126658667|ref|ZP_01729813.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110]
 gi|126620104|gb|EAZ90827.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110]
          Length = 826

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 130/245 (53%), Gaps = 8/245 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +++F  +T   +AE  + +       A++ K  F+ +VS+ELR+P+  I+GF+ LLK  K
Sbjct: 318 LVSFREITMRKKAEEEIIKAKLEADSANQAKTEFLTNVSHELRTPMNAILGFSQLLKL-K 376

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L   +    +Y++ I  +S ILL+L+N++LD+   +AG ++LNY    +   L E  +  
Sbjct: 377 LKVDDPLIYEYIDTIYNNSNILLSLINELLDINQAEAGKIELNYCGFSVRQFLGETIKLF 436

Query: 659 ATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
           ++++ +  + + +  +  +  F+  D  RL QI   ++SN++ F++KG   IL + ++  
Sbjct: 437 SSQLSKKTVNLLIDIEDNVPKFINFDSLRLRQILINLISNSLKFTTKGHIKILISIQELY 496

Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             +      V++ G  I ++  + +F  F  +  +   R  G GLGL I +      GG 
Sbjct: 497 LNSCTLKIFVEDTGIGIKDEDKERIFQVFTQSKGQDNYRYGGNGLGLFITQKITECLGGT 556

Query: 772 VSISS 776
           +++ S
Sbjct: 557 ITLES 561


>gi|46912173|emb|CAG18968.1| putative sensor histidine kinase FexB [Photobacterium profundum
           SS9]
          Length = 778

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 23/253 (9%)

Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +   A  KA   K +F+  +S+ELR+PL  I+G + +L  +    LN +Q  Y
Sbjct: 244 RDITERKQYQDAQEKASRDKTAFISTISHELRTPLNGIVGLSRMLLET---PLNDEQRGY 300

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  L N+ NDI+D+   D   ++L    +  N+ + E++   +    +  +R 
Sbjct: 301 MRTVHVSAITLGNIFNDIIDMDKSDRRRLELMPKPLDFNEFVTEMENISSLMAEQKGLRF 360

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVK 724
            +    KL +F+  D  RL Q+   ++ NA  F+ +G  VIL  + +      +  F V+
Sbjct: 361 DLERLTKLPAFIEVDSTRLRQVLWNLIGNATKFTKEGG-VILSVSSEIFEHEAEITFDVE 419

Query: 725 NNGSSIPEDMCKSVFNRFVS------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS- 777
           ++G  IP      +F  +        N H     G G+GL++    + L GG++ ++S  
Sbjct: 420 DSGIGIPASEVDKIFTMYYQVKQGSDNLH---AVGTGIGLAVSRQLVQLMGGNILVTSDI 476

Query: 778 DEGVT-TINCRIP 789
            EG T T+  R+P
Sbjct: 477 GEGSTFTVTIRVP 489


>gi|300785438|ref|YP_003765729.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|299794952|gb|ADJ45327.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 590

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 16/241 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  E  E   + +E +   +  VS+ELR+PL  I G+  L+ T     +     + V  +
Sbjct: 360 AFNEMAEHAARTEEQRRDLISDVSHELRTPLGTIRGW--LVATQD--GVAELDDELVSSL 415

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +++L +LV+D+ DLA  DAG+++L+   +   DLL  V  +     H + +   V  
Sbjct: 416 LQETSVLQHLVDDLRDLALADAGMLRLDRVEVNATDLLRHVAAA-----HGDRVDTDVPD 470

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
           D  +    AD  RL QI   +L+NA+  +     + L   R+  D + +V + G+ I PE
Sbjct: 471 DLLV---EADPVRLHQIVGNLLANAVRHTPPDGRIRLHGRREGPDVLITVTDTGTGIAPE 527

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D+   VF+RF        RR  G GLGL+IV        G V+++S+    +T   R+P+
Sbjct: 528 DL-PHVFDRFWRADKSRTRRTGGSGLGLAIVRKLAEAQDGAVTVTSAPGEGSTFTLRMPA 586

Query: 791 K 791
            
Sbjct: 587 P 587


>gi|289674477|ref|ZP_06495367.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 595

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E K     +  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 PNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|281421075|ref|ZP_06252074.1| putative response regulator receiver domain protein [Prevotella copri
            DSM 18205]
 gi|281404993|gb|EFB35673.1| putative response regulator receiver domain protein [Prevotella copri
            DSM 18205]
          Length = 1306

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 15/233 (6%)

Query: 560  EALRKAD--EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            E  RKAD  E K  F+ + ++++RSPLT I+G  + LKT +L    SKQ   ++ I  ++
Sbjct: 781  ERRRKADLEETKMQFLINATHDIRSPLTLIMGPLNKLKT-RLTDAESKQD--IDTIDRNA 837

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--- 674
              LL LVN ILD   +D   M L+     L D L+ +         E NI + +  D   
Sbjct: 838  QRLLLLVNQILDERKIDKNQMHLHCQETPLKDFLHGIISLYRFNAQERNITLSLKEDESL 897

Query: 675  ----GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                GKL  ++ DR    ++ S +LSNAM ++  G  + +   +D  + I  V++ G  +
Sbjct: 898  SSDKGKLKVWI-DRINFDKVISNLLSNAMKYTFDGGEITVIIGKDEKNAIIRVEDTGIGL 956

Query: 731  PEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             E+    +F RF   +N+      G G+GL++ ++F+ +HGG +   +  +G+
Sbjct: 957  KEEKTDRLFERFYQGNNSSGLHIEGTGIGLNLCKAFVEMHGGKIKAYNRTDGI 1009


>gi|152993425|ref|YP_001359146.1| hypothetical protein SUN_1842 [Sulfurovum sp. NBC37-1]
 gi|151425286|dbj|BAF72789.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1046

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 15/227 (6%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++A+E K+ F+ ++S+E+R+PL  I+GFT LLK++   +    Q +++  I  SS  LL
Sbjct: 373 IQEANEAKDLFLANMSHEIRTPLNGIVGFTQLLKST---NPTPDQEEFITVIENSSDNLL 429

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDL--LNEVKQSIATKMHENNIRIKVISDGKLGS 679
            +VNDILDL+ + A   K+   +I  N +       +S   +  E +I + V  D  L +
Sbjct: 430 AIVNDILDLSKIKAD--KIELESIPFNAIEKFESAIESYGARAAEKDIELGVFIDPGLPT 487

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPED 733
             + D  ++ QI   ++SNA+ F+S   ++ ++  +     +N    FSV++ G  I E+
Sbjct: 488 PLIGDPTKISQIIVNLISNAIKFTSTHGSIDVRIEKMNETEENVTMKFSVRDTGIGITEE 547

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
               +F+ F        R+  G GLGL+I        GG + I S +
Sbjct: 548 QKDKIFDPFSQADVSTSRKYGGTGLGLAISVKLTAFMGGELDIESEE 594


>gi|294637120|ref|ZP_06715431.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
 gi|291089691|gb|EFE22252.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
          Length = 999

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 131/255 (51%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T 
Sbjct: 481 AICAMVDVSTRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK 540

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L  +  + +  +S SS +LL ++NDILD + +++  +K+     V  +++  +  +
Sbjct: 541 ---TLPEEVQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVAREVIPHIIGN 597

Query: 658 IATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    +  + + ++ D  R+ Q+ S +LSNA+ F+  G  +IL+A  ++
Sbjct: 598 YLPLVVRKRLTLYCFIEPDVPAEISGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVND 656

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
               F +++ G  IP      +F+ F       QR   G GLGL+I E  ++L  G +++
Sbjct: 657 FYLEFRIRDTGMGIPARDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAV 716

Query: 775 SSSDEGVTTINCRIP 789
            S     +    R+P
Sbjct: 717 ESEPGLGSIFTIRLP 731


>gi|285018865|ref|YP_003376576.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283474083|emb|CBA16584.1| putative two-component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1619

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 126/244 (51%), Gaps = 18/244 (7%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+ ++AE+ L +      +A + K+SF+ ++S+E+R+P+  ++G   LL+ +   +L+
Sbjct: 874  DITEQLQAEQELRQAKALADEASQAKSSFLANMSHEIRTPMNAVLGMLQLLRRT---ALD 930

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++Q+ YV     + T LL+L+NDILD + ++AG ++L+     + +LL +    ++  + 
Sbjct: 931  ARQADYVGKAQKAGTSLLSLLNDILDYSKIEAGKLQLDLHPFSMEELLRD----LSVVLS 986

Query: 664  ENNIRIKVISDGKLG-----SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAAR 714
             N+ R +V    +LG       + D  RL Q+   +  NA+ F+  G  +    +L    
Sbjct: 987  GNHQRPEVEIVYRLGRDIPDCLIGDSLRLQQVLINLAGNALKFTEHGHVLLNVDLLHRQP 1046

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                   +V+++G  I  +  + +F+ F        RR  G GLGL I    + + GG +
Sbjct: 1047 QAVTLRVTVEDSGIGISAEQQQRIFHSFTQAEASTSRRFGGSGLGLVISRRLVGMMGGQL 1106

Query: 773  SISS 776
             + S
Sbjct: 1107 QLHS 1110


>gi|237715249|ref|ZP_04545730.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405093|ref|ZP_06081643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646474|ref|ZP_06724113.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
 gi|294808662|ref|ZP_06767396.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
 gi|229444558|gb|EEO50349.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262355968|gb|EEZ05058.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638187|gb|EFF56566.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
 gi|294444101|gb|EFG12834.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
          Length = 1341

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L EK + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I 
Sbjct: 805  LREK-QYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIH 861

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D
Sbjct: 862  KNAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHAD 921

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +      DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+ 
Sbjct: 922  CEQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEED 981

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF    + GQ  G G+GL++ +  +  H G +++ S
Sbjct: 982  YVKIFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVES 1023


>gi|229084562|ref|ZP_04216832.1| hypothetical protein bcere0022_11960 [Bacillus cereus Rock3-44]
 gi|228698712|gb|EEL51427.1| hypothetical protein bcere0022_11960 [Bacillus cereus Rock3-44]
          Length = 606

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 132/246 (53%), Gaps = 13/246 (5%)

Query: 543 VNVTDSVR----AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           VN+ D +     A   L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K   
Sbjct: 354 VNLKDRIDRLNVANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK--- 410

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              ++   + Y + I   +  +  L+ ++L+LA +++G  KL  +T  L +L+ +V   +
Sbjct: 411 -DGVSKDNTYYTDVILEETENMNRLIVEMLELAKLESGTYKLEMNTFSLGELVQQVYTKL 469

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              M E  +++++  D     +V A+R R+ Q+   +LSNA+ ++ +G  + ++   +  
Sbjct: 470 LFSMEEKQLQVEI--DANPSIYVEANRNRIEQVVVNLLSNAIRYTPEGKEIYIRITENEE 527

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
                ++N G+ IP++  + +++RF   +A R +   G GLGLSIV++ ++LH     + 
Sbjct: 528 KVKVEIENTGNPIPDESLQKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVY 587

Query: 776 SSDEGV 781
           ++++ V
Sbjct: 588 NTNDSV 593


>gi|259909469|ref|YP_002649825.1| hybrid sensory histidine kinase BarA [Erwinia pyrifoliae Ep1/96]
 gi|224965091|emb|CAX56623.1| Signal transduction histidine-protein kinase [Erwinia pyrifoliae
           Ep1/96]
          Length = 909

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 15/232 (6%)

Query: 556 TEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVE 611
            E + A R+A E   IK+ F+ ++S+ELR+PL  +IGFT   LKT     LNS Q  Y+ 
Sbjct: 277 VELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTM----LNSTQRDYLH 332

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +
Sbjct: 333 TIERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTL 392

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NN 726
            I      + + D  R+ QI   +L NA+ F+  G+  I   K A  N      V+  + 
Sbjct: 393 NIQSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDT 452

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I E     +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 453 GIGISEKQQSKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHS 504


>gi|91224013|ref|ZP_01259276.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
 gi|91190924|gb|EAS77190.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
          Length = 878

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 134/250 (53%), Gaps = 18/250 (7%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+S
Sbjct: 355 VEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSS 411

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATK 661
            Q + V+ I +SS  LL L+NDILDL+ +++G ++L   ++V  D+   V QS+    +K
Sbjct: 412 HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLEL---SLVEADIREVVYQSMILFQSK 468

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARD 715
                +++ + +++      + D  R+ Q+ + ++SNA+ F+  G   +  +      ++
Sbjct: 469 ATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTESGHVCVDVSYEELLEKE 528

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G   F V++ G  I +D   ++F  F        R+  G GLGL+I    +++ GG + 
Sbjct: 529 RGVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSMMGGKL- 587

Query: 774 ISSSDEGVTT 783
           +++S +GV T
Sbjct: 588 VATSTKGVGT 597


>gi|116199517|ref|XP_001225570.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51]
 gi|88179193|gb|EAQ86661.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51]
          Length = 2325

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+ +VS+ELR+PL  +IG ++LL+ S   +LN +Q +  + I  S+ +LL ++
Sbjct: 1823 ATKAKSIFLANVSHELRTPLNGVIGNSELLRDS---NLNKEQLEMADSIRVSADLLLTVI 1879

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV- 681
            NDILD + ++A  MKL        +++ EV ++++    E   +  +K+I D  L   + 
Sbjct: 1880 NDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLPPMLI 1939

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCK 736
              D  RL Q+   ++ N++ F+  GS  I     K  ++N    F VK+ G  I     +
Sbjct: 1940 YGDPIRLHQVLGNLIGNSLKFTEDGSITIGARIDKETKENATLTFWVKDTGIGISAQQLE 1999

Query: 737  SVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSISSSDEGVTT 783
            ++F  F        R+  G GLGLSI +S I  +  G + + S +   TT
Sbjct: 2000 NLFQPFSQADASTARKYGGSGLGLSICKSLIETMMQGTIRLESQEHLGTT 2049


>gi|291527567|emb|CBK93153.1| Signal transduction histidine kinase [Eubacterium rectale M104/1]
          Length = 440

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+  ++E +  A + +  F  +VS+EL++PLT I G+ +L++   +     +Q  +   I
Sbjct: 208 AIRIQHEGVLAAAKSRQDFTANVSHELKTPLTAISGYAELIENGMVEK--EQQIHFATEI 265

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  LL+L+NDI+ L+ +D+   +  +  + L  L+ +  +++     +  + +    
Sbjct: 266 RRNAQRLLSLINDIIKLSELDSSEAQQGFEQLDLYGLVKDCMETLQVNAEQRKVALNF-- 323

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           DG       +RQ L ++   +  NA+ ++++G TV +   +  G  + +V++NG  IP+D
Sbjct: 324 DGTDCMVRGNRQLLTELVENLCQNAIRYNNEGGTVNVTVHKLGGKTVLTVEDNGIGIPKD 383

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             + VF RF  V  +   +  G GLGL+IV+  + LH   +++ S     TTI
Sbjct: 384 QQERVFERFYRVDKSRSKETGGTGLGLAIVKHIVQLHDAGLTLDSEVGRGTTI 436


>gi|297544880|ref|YP_003677182.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842655|gb|ADH61171.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 456

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 164/339 (48%), Gaps = 34/339 (10%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV  F  + RI L N A + +   +   L  G HI  I      Y       DLF  +  
Sbjct: 124 GVIAFDNNERILLINDAAKKILNIKGKYLI-GKHILEIVRNSKLY-------DLFEDVKK 175

Query: 506 SFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           + +   KSL+  L + +  +  Y S I  P +   L FV + D +      TE    +R+
Sbjct: 176 NKNSPSKSLE--LNVFNKHLKVYTSPILHPISHQNLGFVLIIDDI------TE----MRR 223

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            ++I+N FV +VS+ELR+PLT+I GF + L+   + +  ++  ++++ I   S  L  L+
Sbjct: 224 LEKIRNEFVANVSHELRTPLTSIRGFIETLRNGAIENPEARD-KFLDIIDFESERLTRLI 282

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFV- 681
           NDIL L+ ++   +K  Y T    +L NE++    I  KM  N   I +I D      V 
Sbjct: 283 NDILTLSEIEN--VKEGYPT-EETELDNEIEDILYIMDKMARNK-NITLIKDLNCPGLVI 338

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVF 739
             ++ R  Q+   ++ N + ++ +G  V + + R+ GD  I  VK+NG  I ++    +F
Sbjct: 339 NTNKDRFHQMMINLIDNGIKYTPEGGFVKV-STREEGDKIIIEVKDNGIGISKENIPRLF 397

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            RF  V  +   +  G GLGL+IV+  +    G +S+ S
Sbjct: 398 ERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVES 436


>gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 1206

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 7/234 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD    E AL E  E    A   K++F+ ++S+E+R+P+  IIGFT++L +    + N K
Sbjct: 571 TDRRMIEEALIESKEKAEMASITKSTFLANMSHEIRTPMNAIIGFTEVLLSDPNPNQNKK 630

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              ++E I  S+  LL L+ND+L+ A +D G ++L      L  L+++V  +   +    
Sbjct: 631 ---HLETIRNSAKSLLRLLNDVLNSAKLDRGALELESVDFSLISLVDQVSSTFIMEAKRK 687

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +        +L  +   D  R+ QI + ++ NA+ F+ +G  + L      G  +F ++
Sbjct: 688 GLEFLTHYSNELEDYYRGDSLRIRQILTNLIGNAIKFTKQGK-IELFITPHKGQVLFHIQ 746

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  I ED  + +F  F        R+  G GLG +I +  + L GG + + S
Sbjct: 747 DTGIGIAEDRMEKIFEPFTQADVSMSRKFGGTGLGTTISKQLVELMGGKIWLES 800


>gi|86607530|ref|YP_476292.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556072|gb|ABD01029.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 1002

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 125/249 (50%), Gaps = 12/249 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R  +A   + + L + + +K+ F+  VS+ELR+P+TN+     +L+ ++      KQ  
Sbjct: 733 ARLYQAAQAQVKELERLNLLKDDFLSTVSHELRTPMTNVRMALQMLQMTR--DNPEKQRH 790

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHEN 665
           Y           + L+ND+LD+  + AG   L    I L   L ++    Q +A   H++
Sbjct: 791 YFTIALKECNRQIELINDLLDMRRLGAGTYLLQPENIFLPRYLQDLLAGAQPLAQAKHQH 850

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
              +++  +  + S  AD   L +I  ++L NA+ +++   ++ L+A  + G+ I  V +
Sbjct: 851 ---LQLHLEAGIPSLWADPTCLGRILRELLHNAIKYTAPEGSIHLRAVSE-GEGILFVCS 906

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           N S IP      +F +F  +  + R +  G GLGL++V+  +   GG++S++SSD G T 
Sbjct: 907 NSSEIPTAELPRIFEKFYRIPQSDRWKHGGTGLGLALVKQLVEHMGGNISVNSSD-GWTH 965

Query: 784 INCRIPSKE 792
               +P  E
Sbjct: 966 FQVWLPQGE 974


>gi|299147467|ref|ZP_07040532.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298514745|gb|EFI38629.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1341

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L EK + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I 
Sbjct: 805  LREK-QYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIH 861

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D
Sbjct: 862  KNAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHAD 921

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +      DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+ 
Sbjct: 922  CEQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEED 981

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF    + GQ  G G+GL++ +  +  H G +++ S
Sbjct: 982  YVKIFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVES 1023


>gi|46123237|ref|XP_386172.1| hypothetical protein FG05996.1 [Gibberella zeae PH-1]
          Length = 2544

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 17/248 (6%)

Query: 550  RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +A+ A  E    ++ A+E    K+ F+ +VS+ELR+PL  +IG ++LL+ S+L   N  Q
Sbjct: 1900 KAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSEL---NRDQ 1956

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +  + I  S+ +LL ++NDILD + ++A  MKL        D++ EV ++++    E  
Sbjct: 1957 LEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKT 2016

Query: 667  IR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718
             +  +K++    L   +   D  RL Q+   ++ N++ F+  GS  I     K  +++  
Sbjct: 2017 SKKNVKIVQSINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETQEHAT 2076

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSIS 775
              F V++ G  IP      +F  F        R+  G GLGLSI +S I  +  G + + 
Sbjct: 2077 LTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLE 2136

Query: 776  SSDEGVTT 783
            S +   TT
Sbjct: 2137 SEENVGTT 2144


>gi|332524127|ref|ZP_08400357.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107466|gb|EGJ08690.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 1062

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 15/261 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
              V + +   R L E   AL +A+     K  F+  +S+ELR+PL  +IGF  LL   +
Sbjct: 660 LAGVAEDITEHRRLEESERALHRAEAANRAKTEFLSRMSHELRTPLNAMIGFAQLLGLDR 719

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L   Q ++   +  +   LL ++ND LDLA ++ G ++L+   + L   +    + I
Sbjct: 720 DPPLAPHQREWSTQMLRAGWHLLAMINDTLDLARLETGAVQLDLRPLDLRSAVGASIEMI 779

Query: 659 ATKMHENNIRIKVISDGKLG----SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-A 713
           AT       R+ V  D +L     + +AD  RL Q+ + +LSNA+ ++  G TV++++ A
Sbjct: 780 ATAAE----RMGVTVDAELAPEALAVLADDTRLKQVLTNLLSNAVKYNRPGGTVVVESLA 835

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
            D+      V++ G  +  +    +F  + +   R Q    G G+GL I      L GG 
Sbjct: 836 PDDEHVQLRVRDTGLGMTPEQVAGLFQPY-NRLGREQSTIEGTGIGLVISRRLAELMGGT 894

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +   S+    +     +P  E
Sbjct: 895 LDGDSTAGSGSVFTLTLPRAE 915


>gi|325963064|ref|YP_004240970.1| signal transduction histidine kinase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469151|gb|ADX72836.1| signal transduction histidine kinase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 508

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 28/247 (11%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A +K++     FV   S+ELR+PLT I G+T+L++ ++  + + ++S  +  + + S  
Sbjct: 261 QARQKSETKVRQFVADASHELRTPLTAIRGYTELMRMTEDFTPDGEKS--LARVQSQSER 318

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRI---KVISD 674
           +  LV D+L LA +D G   L  S + L  L+ E    + +    H   + +    V+ D
Sbjct: 319 MTALVEDLLLLARLDEG-QPLKLSEVDLTQLVVESVSDEKVMAPGHSWRLELPDEPVVVD 377

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPED 733
           G       D  +L Q+   +LSNA   +  G+TV+   +R   G  + +V ++G  IP +
Sbjct: 378 G-------DASQLRQVLMNLLSNARKHTPPGTTVVTSVSRSPEGAAMVTVTDDGGGIPAE 430

Query: 734 MCKSVFNRFV-SNAHR---GQRRGV-------GLGLSIVESFINLHGGHVSISSSDEGVT 782
               VF+RF  ++A R   G + G        GLGLSIV+S +  HGG V+++S   G T
Sbjct: 431 FVDHVFSRFARADAARKGSGDQTGASAAEGTSGLGLSIVQSIVEAHGGRVTVTSQ-PGRT 489

Query: 783 TINCRIP 789
               ++P
Sbjct: 490 QFALQLP 496


>gi|298482475|ref|ZP_07000661.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298271454|gb|EFI13029.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1341

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L EK + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I 
Sbjct: 805  LREK-QYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIH 861

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D
Sbjct: 862  KNAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHAD 921

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +      DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+ 
Sbjct: 922  CEQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEED 981

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF    + GQ  G G+GL++ +  +  H G +++ S
Sbjct: 982  YVKIFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVES 1023


>gi|255530788|ref|YP_003091160.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255343772|gb|ACU03098.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 526

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 23/251 (9%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+    R   +L ++ +     +++K  F+ ++S+E+R+P+  I+GF   L+     SL 
Sbjct: 118 NIDKVERISLSLEKEQQRAEHYEKVKQYFLVNMSHEIRTPMNAILGFARHLQE----SLK 173

Query: 604 SK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            K Q + ++ I  S   LL  +NDILD A ++ G  ++++  +  N  L +  QSI   M
Sbjct: 174 DKDQMESIKMIIKSGDHLLVTLNDILDFANIETG--EISFVCLPFN--LRDTIQSICMLM 229

Query: 663 HENNIRIK------VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD 715
            E+N R+K       I      S   D  RL QI   + SNA+ F+  G   I  KA  D
Sbjct: 230 -ESNARLKEIGLSYTIDPNIPDSIYGDSVRLTQILLSLTSNAIKFTETGGVSISAKAVTD 288

Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           + D +   F VK+ G  IP D  + +FN F    +  +R+  G G+GLSIV+  I L  G
Sbjct: 289 HDDHVVVEFRVKDTGIGIPLDKQEKIFNPFEQGTNHMKRKFGGTGIGLSIVKHLIALQDG 348

Query: 771 HVSISS-SDEG 780
            + ++S  DEG
Sbjct: 349 VIQLNSLPDEG 359


>gi|217963398|ref|YP_002349076.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|217332668|gb|ACK38462.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|307572027|emb|CAR85206.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 591

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +R  + +++ FV +VS+EL++P+T + GF + LL  +    +  K+  ++  I   S  L
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKK--FLTIIKEESDRL 416

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ DIL L+ ++   +  N   + +++++ +  ++I     E NIR+ +         
Sbjct: 417 HRLIMDILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVM 476

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      VF
Sbjct: 477 IETDRDKLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDRVF 536

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 537 ERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|161936330|ref|YP_128770.2| aerobic respiration control sensor protein ArcB [Photobacterium
           profundum SS9]
          Length = 798

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 23/253 (9%)

Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +   A  KA   K +F+  +S+ELR+PL  I+G + +L  +    LN +Q  Y
Sbjct: 264 RDITERKQYQDAQEKASRDKTAFISTISHELRTPLNGIVGLSRMLLET---PLNDEQRGY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  L N+ NDI+D+   D   ++L    +  N+ + E++   +    +  +R 
Sbjct: 321 MRTVHVSAITLGNIFNDIIDMDKSDRRRLELMPKPLDFNEFVTEMENISSLMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVK 724
            +    KL +F+  D  RL Q+   ++ NA  F+ +G  VIL  + +      +  F V+
Sbjct: 381 DLERLTKLPAFIEVDSTRLRQVLWNLIGNATKFTKEGG-VILSVSSEIFEHEAEITFDVE 439

Query: 725 NNGSSIPEDMCKSVFNRFVS------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS- 777
           ++G  IP      +F  +        N H     G G+GL++    + L GG++ ++S  
Sbjct: 440 DSGIGIPASEVDKIFTMYYQVKQGSDNLH---AVGTGIGLAVSRQLVQLMGGNILVTSDI 496

Query: 778 DEGVT-TINCRIP 789
            EG T T+  R+P
Sbjct: 497 GEGSTFTVTIRVP 509


>gi|16124905|ref|NP_419469.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221233626|ref|YP_002516062.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13421867|gb|AAK22637.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220962798|gb|ACL94154.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 776

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 8/252 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  RA   L  +     +A E +++F+ ++S+ELR+PLT +IGF  L++   L  L 
Sbjct: 386 DITEYKRARDELAAEQARAEQALEARSAFLANMSHELRTPLTAVIGFAALVE--GLDDLP 443

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                YV  IS +   LL+++ND+L+++ ++ G ++ + +   L  L+++  +       
Sbjct: 444 ETARDYVGRISTAGKALLSVINDVLEMSKLETGQVQAHLAPCALAPLIDDTVRMFGLHAA 503

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF- 721
           E N++I V + D      + D  R+ Q+   ++ NA+ ++  GS  +    R   + +F 
Sbjct: 504 EKNLQIAVRMVDPPPRVLMIDPDRVRQVLINLIGNAIRYTDAGSITLEVIWRGELEELFV 563

Query: 722 SVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +VK+ G  I P D    +F RF  + +A    R G GLGL I +  +   GG +  SS  
Sbjct: 564 AVKDTGIGIDPADQAH-LFKRFSQIESARARSRGGSGLGLVISKGLVEAMGGRIGASSKP 622

Query: 779 EGVTTINCRIPS 790
              +T    IP+
Sbjct: 623 GEGSTFWFAIPA 634


>gi|117923856|ref|YP_864473.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607612|gb|ABK43067.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1302

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 119/248 (47%), Gaps = 11/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  + +     ++A+ +K  F+ ++S+E+R+P+  I+GFT+L  T    + + +   +
Sbjct: 690 RDQEMVKQATAEAQRANAVKGRFLANMSHEIRTPMNAIMGFTELSLTQHPPAPHDR---H 746

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +S  LL L+ND+LD + +DA  + L        + L ++ Q +A +     +  
Sbjct: 747 LQAIRTASQTLLALLNDVLDFSKIDAEQLALEQIPFSPTEQLQQIAQMLAPQAQAKGLHF 806

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSV 723
                G + +  + D  RL Q+   ++SNA+ F+ +G  V+     +          F V
Sbjct: 807 HTFQQGSMPTLLLGDALRLRQVLINLVSNAIKFTHQGKVVLGMYGNEPTPEGRCLLRFEV 866

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++G  I     + +F  FV       R   G GLGL+I +  ++L GG + + S+    
Sbjct: 867 IDSGIGIEASQQERLFQPFVQGDLSTTRTYGGSGLGLAISKRLVHLMGGEMQLESTLGAG 926

Query: 782 TTINCRIP 789
           +  +C +P
Sbjct: 927 SKFSCLLP 934


>gi|327478668|gb|AEA81978.1| signal transduction histidine kinase [Pseudomonas stutzeri DSM
           4166]
          Length = 803

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 3/217 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ + ++  F+  VS+ELR+PLT+I G   L+ ++ +G +  +  + ++    +S  L  
Sbjct: 567 KRIERLQREFISTVSHELRTPLTSITGALALVCSNVMGEVPGQMRELLDIAQQNSQRLGA 626

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++D+LD+  + AG M+ +     L   L    +S  +    + ++++ + D        
Sbjct: 627 LIDDLLDMDKLHAGKMRFDLLEQPLLPQLELALRSNGSYAERHGVQLR-LGDCPAVQVEI 685

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+ S +LSNA  FS  G  V L A   +G    SV++ G  I ++  + VF +F
Sbjct: 686 DAMRLQQVLSNLLSNAAKFSPPGEQVELLARMRDGHVRVSVRDRGPGISDEFRERVFQKF 745

Query: 743 VS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               ++   Q+ G GLGL+I +  I   GG +   S+
Sbjct: 746 AQADSSDSRQQGGTGLGLAISKELIEHMGGQIGFESA 782


>gi|228990572|ref|ZP_04150537.1| hypothetical protein bpmyx0001_13340 [Bacillus pseudomycoides DSM
           12442]
 gi|228769098|gb|EEM17696.1| hypothetical protein bpmyx0001_13340 [Bacillus pseudomycoides DSM
           12442]
          Length = 604

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 130/246 (52%), Gaps = 13/246 (5%)

Query: 543 VNVTDSVR----AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           VN+ D +     A   L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K   
Sbjct: 352 VNLKDRIDRLNIANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK--- 408

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              ++   + Y + I   +  +  L+ ++L+LA +++G  KL  ST  L +L+ +V   +
Sbjct: 409 -DGVSKDNTYYTDVILEETENMNRLIVEMLELAKLESGTYKLEMSTFSLGELVQQVYTKL 467

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              M E  +++++  D     +V A+R R+ Q+   +LSNA+ ++  G  + ++   +  
Sbjct: 468 LFSMEEKQLQVEI--DANPSIYVEANRNRIEQVVVNLLSNAIRYTPDGKEIRIRVIENEE 525

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
                ++N G+ IPE+  + +++RF   +A R +   G GLGLSIV++ + LH     + 
Sbjct: 526 KVKVEIENTGNPIPEESLQKIWDRFYRLDASRSRHTGGTGLGLSIVKNILELHHAKYGVY 585

Query: 776 SSDEGV 781
           ++++ V
Sbjct: 586 NTNDSV 591


>gi|188577310|ref|YP_001914239.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae PXO99A]
 gi|188521762|gb|ACD59707.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae PXO99A]
          Length = 1191

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 17/239 (7%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQL 906

Query: 668  RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSV 723
                  D  L  +   D  R+ QI   +L NA+ F+ +GS  +  AA            V
Sbjct: 907  AFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTERGSVHLRIAALPQHTQQGIRVEV 966

Query: 724  KNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V++SS
Sbjct: 967  RDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGSVTVSS 1022


>gi|121998928|ref|YP_001003715.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590333|gb|ABM62913.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 680

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 125/262 (47%), Gaps = 16/262 (6%)

Query: 528 YSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +S+ P+ +A      T+    +++D  R E+ L    +A+R     K+ F+  VS++LR+
Sbjct: 268 FSVHPITDAHDELIATLSVTFDISDQKRVEQEL---EQAVRA----KSDFLNAVSHDLRT 320

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++GF+ LL  + L     ++ +Y E+       L  L++ +L+L+ + +G M+ + 
Sbjct: 321 PLNALMGFSQLLAETDLTP--EERQRYAEHCRRGGERLHGLIDSLLELSRLQSGGMRAHT 378

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
             + L  L+ E             I +       L  ++  DR RL Q  S ++ NA+ +
Sbjct: 379 EPLALPALIEEQCALFRPAAERKGIELACQISADLPRWIQGDRTRLEQALSNLIDNAIKY 438

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           +  G   I  +A +      +V++ G  IP +    +F  F    ++G+++G GLGL+I 
Sbjct: 439 TEAGHVRITASA-EGEQITLAVEDTGPGIPAENRDRIFAAFDRGNYQGEQQGHGLGLAIA 497

Query: 762 ESFINLHGGHVSISSSDEGVTT 783
                L GG++ + S     TT
Sbjct: 498 REIAQLMGGNLHLDSEQGRGTT 519


>gi|313205125|ref|YP_004043782.1| osmosensitive k channel signal transduction histidine kinase
           [Paludibacter propionicigenes WB4]
 gi|312444441|gb|ADQ80797.1| osmosensitive K channel signal transduction histidine kinase
           [Paludibacter propionicigenes WB4]
          Length = 886

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 11/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R  T K   + +++++  +    +S+ELR P+  I+G ++ L   +L     +Q  Y E 
Sbjct: 650 RNATRKTYMISESEKLYKTLFNSISHELRIPIAAIMGSSETLLEQQLPE-QIQQELYSE- 707

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ +S  L  LV ++L+++ +++G +  +      +DL+N V +S+  ++     +I + 
Sbjct: 708 INTASIRLNRLVENLLNMSRLESGRITPHPDWCDAHDLVNSVSESLQNELESFTFKIDIP 767

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  L     D   + Q+   ++ NA   S KGS + LK    + +    V + G   PE
Sbjct: 768 DD--LPLIYVDFGLIEQVLHNLVLNATQHSPKGSAIELKIELADDNLFIKVTDRGHGFPE 825

Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D   SVF++F    +RG+     G GLGLSIV+ F+  H G VS ++   G      +IP
Sbjct: 826 DELSSVFDKF----YRGKDAKAGGTGLGLSIVKGFVEAHNGSVSAANGVNGGAVFTLKIP 881

Query: 790 SKE 792
            KE
Sbjct: 882 KKE 884


>gi|317133438|ref|YP_004092752.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315471417|gb|ADU28021.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 479

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 4/229 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   A+      L K ++++   + ++S++LR+PLT +  + +L++    G    K++ +
Sbjct: 241 RLAAAMNYMTGELSKTEQLRRDLIANISHDLRTPLTMVKMYAELIRDVS-GGQTEKRTAH 299

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I   +  L  L+ D+LDL+ + AG   L   T  L +    +    A     N  R 
Sbjct: 300 AQLIIDEADRLSLLIKDMLDLSKIQAGTESLKPVTFDLGEKARVILTRFAVLAERNGYRF 359

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +   G   +  AD +++ Q+   ++ NA++++    TV L+ AR N    FSV + G  
Sbjct: 360 SLDCAGDT-AVTADERKIEQVIYNLVGNAVNYTGADKTVSLRVARQNDGVCFSVTDTGKG 418

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           IP + C  ++ R+       + R  G GLGLSIV++ +  H     + S
Sbjct: 419 IPPEKCAHIWERYYMAKETTRHRVVGTGLGLSIVKAILAAHHARFGVES 467


>gi|256842305|ref|ZP_05547809.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13]
 gi|256736189|gb|EEU49519.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13]
          Length = 571

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 116/216 (53%), Gaps = 1/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ +++G++N +Q    E I  SS  LL
Sbjct: 344 FKELDSAKTTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAESIKESSNRLL 403

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            + +++L +  V+AG ++LN       +L+    ++   +    N  I+V    K+    
Sbjct: 404 EITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLF 463

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +++  + + +LSNA+ ++ +   +I+ A + +      V++ G  I     +S+F+R
Sbjct: 464 VDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDPRYHQSIFDR 523

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +       + +G GLGL+I + F+  HGG +S+ S+
Sbjct: 524 YF-RVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSA 558


>gi|229018482|ref|ZP_04175344.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273]
 gi|229024738|ref|ZP_04181177.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272]
 gi|228736581|gb|EEL87137.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272]
 gi|228742834|gb|EEL92972.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273]
          Length = 443

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 120/233 (51%), Gaps = 8/233 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ D+++  FV +VS+E +SPL++I GF+  L++  +     ++ +Y++ I   S  
Sbjct: 215 KSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSE--EERKRYLKIIEGESKR 272

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++  + D  + 
Sbjct: 273 MSSLCKQLLTLASLDKEEKVLQMKEFHLQKQIKDVIFMLEWKWREKDIAVEFDVPDIVIN 332

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D   L Q++S I +N++ FS+ G TV     +     + S+ +NG  + ++    +
Sbjct: 333 ---GDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEKLESSIVISISDNGIGMEKEEMDRI 389

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 390 FDRFYKVDTARARNIEGSGLGLSIVQKIVELHQGTVSVYSTKGEGTTVRVELP 442


>gi|229114563|ref|ZP_04243977.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
 gi|228668628|gb|EEL24056.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
          Length = 883

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++ +  + D           
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|217037911|gb|ACJ76427.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 142/290 (48%), Gaps = 43/290 (14%)

Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKAD---EIKNSFV 573
           ++ S+ P+  PN        N+   V  ER +T+K E       A  KAD   + K++F+
Sbjct: 363 IDVSVTPIFKPNG-------NIMHYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFL 415

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PL  I+G   ++++      + +Q + ++ +  S   LL+L+NDILD + +
Sbjct: 416 ATMSHELRTPLNGILGMAQIIES---NIKDEEQHKQIKVLLESGDHLLSLLNDILDFSKI 472

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--------NNIRIKVISDGKLGSFVADRQ 685
           +   ++LN+++   ND+++ +  +  +   +        NNI  K I       F+ D+ 
Sbjct: 473 EQNKLELNHASFYFNDVIDPIANTYLSICEDKGLQFIINNNINEKTI-------FLGDKP 525

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           R+ QI   ++SNA+ F+ KGS  +        +        V++ G  I +   K +F  
Sbjct: 526 RIRQIIFNLISNAVKFTHKGSITLNFSHTLTPKGEQAVQIKVQDTGIGIRKKRLKHIFEP 585

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+       R+  G GLGL+IV+   +   G++S++SS+   T     +P
Sbjct: 586 FIQAETSTTRQYGGTGLGLTIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635


>gi|145225002|ref|YP_001135680.1| multi-sensor signal transduction histidine kinase [Mycobacterium
           gilvum PYR-GCK]
 gi|145217488|gb|ABP46892.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium gilvum
           PYR-GCK]
          Length = 1361

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 5/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+ R    + E L + D  K +F  ++S+E R+PLT I+     L+ +   +L     Q 
Sbjct: 303 RSYRTQQMRAEELAELDRAKTTFFSNISHEFRTPLTLILDPVSELRRAD--TLGDAARQE 360

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +   L  LVN +LD + ++AG  + +Y  + L  +  E+     + +    +  
Sbjct: 361 LDVVWRNGLRLNKLVNTLLDFSRIEAGRTQAHYQPVDLGAVTAELASVFRSAIERAGLVF 420

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V           D     ++   +LSNA+ F+ +GS V + A RD    + +V + G+ 
Sbjct: 421 DVDCPPLGEEAYVDLDMWEKVIFNLLSNALKFTFEGS-VSVTARRDGRGAVITVSDTGTG 479

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +P D    +F RF  + N       G G+GL++V+  + LHGG +   S++   TT   R
Sbjct: 480 VPADEMPRLFERFHRIENTRARSNEGSGIGLALVKELVGLHGGTIEADSAESRGTTFTIR 539

Query: 788 IP 789
           +P
Sbjct: 540 LP 541


>gi|46190224|ref|ZP_00206373.1| COG0642: Signal transduction histidine kinase [Bifidobacterium
           longum DJO10A]
          Length = 344

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 13/234 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  E    L  AD+++   + +VS+ELR+P++ +    + +       +       +E 
Sbjct: 103 RSFNEMAGELEHADKMRRDMIANVSHELRTPVSALQAMVENMADG----VTEPTPTNLES 158

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN       D L+E  +   IA   H ++IR+ 
Sbjct: 159 ILTQTQRLSDLIAFLLDLSRMEAGAASLNIEKFNFADFLDETIEPLEIADGGHAHDIRVT 218

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGS 728
           V +D  +     D+ RL Q+F+ I++NA+  S+ G+TV++ A  D   G  + +V N GS
Sbjct: 219 VPADITME---GDQDRLRQLFTNIIANALKHSADGTTVLVDAHEDENQGTIVTNVVNFGS 275

Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            I       +F RFV        +  G GLGLSI      LHGG V +     G
Sbjct: 276 QIAPSDRLDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVKVVDDTRG 329


>gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1046

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 115/271 (42%), Gaps = 6/271 (2%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            V  Y ++    AQT+L       S      L+ +   L   D +K+ F+ + S+ELR+P
Sbjct: 403 GVTAYEMLIFVLAQTLLLAKRFVHSFMEVENLSRR---LLTLDGLKDEFLANTSHELRTP 459

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  II     +        N  Q   +  I      L  L+NDILD + +  G + LN  
Sbjct: 460 LHGIINIAQSMLDRYGAQFNEPQKHNLALIVNVGRRLSYLINDILDFSNLKNGRLALNRR 519

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + +   +N V + +   + +  ++        L    AD  RL QI   +L NAM F+ 
Sbjct: 520 PVNVQTAVNSVLEVLGHNVGKKKLQFVKEWPNSLPKVDADEDRLNQILYNLLGNAMKFTE 579

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           +G  VI    R N +   SVK+ G  I  D    +F  F   +NA      G GLGL I 
Sbjct: 580 EGEIVISAKVR-NREMEISVKDTGPGIAPDHLSHIFEPFNRGANAEDKGYSGTGLGLGIT 638

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              + LHGG++ + S     +T    +P  E
Sbjct: 639 RRLVELHGGYIRVESRLGKGSTFYFTLPLAE 669


>gi|295088146|emb|CBK69669.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1341

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L EK + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I 
Sbjct: 805  LREK-QYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIH 861

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D
Sbjct: 862  KNAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHAD 921

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +      DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+ 
Sbjct: 922  CEQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEED 981

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF    + GQ  G G+GL++ +  +  H G +++ S
Sbjct: 982  YVKIFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVES 1023


>gi|325679716|ref|ZP_08159290.1| HDIG domain protein [Ruminococcus albus 8]
 gi|324108531|gb|EGC02773.1| HDIG domain protein [Ruminococcus albus 8]
          Length = 1203

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 42/359 (11%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK--TEENRLSPGTHIRNIAATC 487
           +TL       +D LSEG+     DGR++  N   ++L+   TE    +P   +  I    
Sbjct: 226 DTLELTHEYVVDKLSEGIIAVDTDGRVRYFNEPAKALYPQLTE----TPAETVEVIEQAI 281

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           S    E    ++   I T   +E       LE   DS             ++   V+ T+
Sbjct: 282 S----EGQTIEIADRIYTPCVNE-------LEFEGDSF-----------GSLYMLVDDTE 319

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ- 606
             +    L E+ +   +A++ K++F+  +S+E+R+P+  ++G  +++    L   + +Q 
Sbjct: 320 HYKYMEQLKEQRQLADRANKAKSAFLASMSHEIRTPINAVLGMDEMI----LRESSERQI 375

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y E I  +   LL+L+NDILD + V+ G M+L  +   L   +N++   +  +  +  
Sbjct: 376 IGYAEDIRTAGRTLLSLINDILDFSKVEQGKMELVPTQYELGSAINDLVNMVRPRADKKG 435

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIF 721
           ++ +V  D K+   +  D  R+ Q    +L+NA+ ++ KGS         +G+      F
Sbjct: 436 LKFEVKVDPKMPHLLYGDEIRVKQCALNLLTNAVKYTEKGSVRFEVGFEKSGEKSIKLRF 495

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
           ++ + G+ I E+  + +F+ F S    G+ R   G GLG+SI    + L G  + + S+
Sbjct: 496 TIADTGAGIREEDMEKLFSPF-SRIEEGKNRSIEGTGLGMSITVQLLELMGSKLDVDST 553


>gi|261856648|ref|YP_003263931.1| multi-sensor hybrid histidine kinase [Halothiobacillus neapolitanus
           c2]
 gi|261837117|gb|ACX96884.1| multi-sensor hybrid histidine kinase [Halothiobacillus neapolitanus
           c2]
          Length = 1167

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 24/261 (9%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + ++ E+AL E  +A  +A++ K+ F+  +S+ELR+PL  I+GF  L+  S+   L  KQ
Sbjct: 739 ERIKFEQALVESKQAADRANKAKSMFLSSMSHELRTPLNAILGFAQLMAASRREPLTEKQ 798

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + +V +I  +   LL L+ND+L+LA ++AG M L+  T+ L  +L +    +A       
Sbjct: 799 NGFVAHILKAGQHLLTLINDVLNLAKIEAGEMTLSPETLDLGVILRDALDMVADNAASTG 858

Query: 667 IRIKVISDGKLGS-----FVADRQRLLQIFSKILSNAMDFSSK------------GSTVI 709
           I +    +G+  S       AD  R  Q+   IL+NA+ ++              G +V 
Sbjct: 859 IALFNEFNGEHSSPEPLLICADLTRSRQVLLNILTNAIKYNRPRGSGGPYSPDNLGGSVW 918

Query: 710 LKA----ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVE 762
           ++       D G+++   ++++ G  IP      +F  F       G   G G+GL I  
Sbjct: 919 VRRLPSYQNDAGNWMHGLAIEDTGMGIPAAQQHRLFRPFERLGQEAGTIEGTGIGLLITR 978

Query: 763 SFINLHGGHVSISSSDEGVTT 783
             I L  G +   S +   TT
Sbjct: 979 QLIELMQGRIDFESEEGKGTT 999


>gi|168014234|ref|XP_001759657.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162689196|gb|EDQ75569.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 927

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 36/246 (14%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +++E+RSPL+ +I    +L  +   SLN +Q +YVE++++S  ++L L+NDILDL+ V+A
Sbjct: 367 MAHEIRSPLSGVISTASVLART---SLNQEQKRYVEFMTSSGNVVLKLINDILDLSKVEA 423

Query: 636 GIMKLNYSTIVLNDLLNEVKQ----SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           G M          +++  V Q    S+A      ++   V  D  L   V D  R+ Q+ 
Sbjct: 424 GAMTFEEKKFRPREVVKHVLQMASASVAADKKTIHLETDVSEDVPL-EVVGDVLRIRQVL 482

Query: 692 SKILSNAMDFSSKGSTVIL--------KAARDN---------------GDFI---FSVKN 725
           + ++SNA+ F+ +G   I+          ARD+                D +   F + +
Sbjct: 483 TNLVSNAVKFTHEGKVSIVVRVVGPPSHTARDHTNAGGQEALVKDEDTKDMMWIEFYIVD 542

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E    ++F R+   S+ H  +  G GLGL I +    L GG +S+ S ++  +T
Sbjct: 543 TGIGISEGAIPTLFKRYAQASSTHARKYGGTGLGLHICKQLAELMGGRISVLSKEKEGST 602

Query: 784 INCRIP 789
            + ++P
Sbjct: 603 FSFKLP 608


>gi|84685347|ref|ZP_01013245.1| sensory box histidine kinase/response regulator [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666504|gb|EAQ12976.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2654]
          Length = 847

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 13/241 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++  V+AE  L E  +     ++ K+ F+  +S+E+R+PL  ++G   LLK +KL   +
Sbjct: 332 DISHRVKAETDLVEARDKAVAGEKAKSEFLAVMSHEMRTPLNGLLGTLALLKGTKL---S 388

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATK 661
           +KQ+QYV+ +  S  +LL  +ND+LD+   +AG + +++    L+ L+  V   Q     
Sbjct: 389 AKQAQYVDNLEVSGGLLLTHINDVLDVTKYEAGKLDVDFVPTDLSALVRSVVDNQRDLAS 448

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---D 718
             EN I    +    L   + D QRL Q+   ++ NA+ F+  G   I   A   G   D
Sbjct: 449 ASENTIEWSWVGK-PLPPVMTDPQRLRQVLINLVGNAVKFTRGGRIRIEIGAVPQGGGAD 507

Query: 719 FIFSVKNNGSSI-PEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              +V + G  I PED+ + +F  F +   ++   R G GLGL I        GG +   
Sbjct: 508 VTITVSDTGIGIAPEDIDR-LFEDFETGDRSYGRARNGTGLGLGIARRLTRALGGTIGAE 566

Query: 776 S 776
           S
Sbjct: 567 S 567


>gi|325925799|ref|ZP_08187171.1| bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Xanthomonas perforans 91-118]
 gi|325929107|ref|ZP_08190256.1| bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Xanthomonas perforans 91-118]
 gi|325540525|gb|EGD12118.1| bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Xanthomonas perforans 91-118]
 gi|325543785|gb|EGD15196.1| bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Xanthomonas perforans 91-118]
          Length = 603

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 179/402 (44%), Gaps = 24/402 (5%)

Query: 410 GGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G   W+ +  +  ++  E +Y          +  + E + +     RI L NPAF  L+ 
Sbjct: 199 GTVTWLLQRQIRRRLAAEQEYLRANGRASSVLQTVREPIVLLDASQRIVLHNPAFADLYG 258

Query: 469 TEE--NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            EE  N L P   + +     ++ +       L    +  F+ E+++  G L  +   ++
Sbjct: 259 LEERGNELMPLEEVGDGVWRDAQIHQRLADVLLRGRELWDFEHEQRAADGVLRTM---LI 315

Query: 527 EYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALR-KADEIKN------SFVQH 575
               +PLP++      ++T  +++    A+  + E N  +  K +++        +F   
Sbjct: 316 NARRMPLPDSTDEDVVLMTVSDISLQKAAQLRIQELNRQMEGKVEQVSEVNRELEAFSYS 375

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS++LR+PL ++ GF+D L      + + K   Y+E IS+S+  + +L++D+L  + +  
Sbjct: 376 VSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASLIDDLLVYSRLGR 435

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKI 694
           G ++L    + +  L+ E +  + + +   N   +V      L   VAD   + Q++  +
Sbjct: 436 GALRLQ--AVDMQSLVAETRAILDSNVQSENTGHRVEWHIAPLPVLVADENMMRQLWMNL 493

Query: 695 LSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           L NA+ +S+K     ++ +     +G   FSV++NG+    +    +F  F       + 
Sbjct: 494 LGNAVKYSAKREVAKIEVSYTPMSDGGHQFSVRDNGAGFDMEYSGKLFGVFQRLHKASEY 553

Query: 752 RGVGLGLSIVESFINLHGGHV-SISSSDEGVTTINCRIPSKE 792
            G G+GL+ V   +  HGG V +    DEG T      P+ E
Sbjct: 554 AGTGIGLASVRRVLTRHGGRVWAEGVVDEGATFYFVLPPALE 595


>gi|293371658|ref|ZP_06618069.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
 gi|292633355|gb|EFF51925.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
          Length = 1341

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L EK + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I 
Sbjct: 805  LREK-QYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIH 861

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D
Sbjct: 862  KNAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHAD 921

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +      DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+ 
Sbjct: 922  CEQCLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEED 981

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF    + GQ  G G+GL++ +  +  H G +++ S
Sbjct: 982  YVKIFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVES 1023


>gi|261416771|ref|YP_003250454.1| integral membrane sensor hybrid histidine kinase [Fibrobacter
            succinogenes subsp. succinogenes S85]
 gi|261373227|gb|ACX75972.1| integral membrane sensor hybrid histidine kinase [Fibrobacter
            succinogenes subsp. succinogenes S85]
          Length = 1398

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 133/244 (54%), Gaps = 14/244 (5%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YV 610
            + AL +  E  + A   K  F+ ++S+++R+P+  IIG+T+L  T  +G  N +Q + ++
Sbjct: 873  QAALEQALEMAKSASRAKTMFLNNMSHDIRTPMNAIIGYTEL-ATIHIG--NKEQVRNFL 929

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  SS  LL+L+ND+LD++ +++G + LN     L ++++ +K  +   ++  N++  
Sbjct: 930  GKIELSSNHLLSLINDVLDMSRIESGKLNLNEKLEHLPEIIHTLKDIVQADINAKNLQFF 989

Query: 671  VISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSV 723
              S G +    V DR RL Q+   ++SNA+ ++  G ++     +   D      + F +
Sbjct: 990  ANSVGIRNEDVVCDRLRLNQVLLNVISNAIKYTPAGGSIWFSVEQKESDEDGYGVYEFRI 1049

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
            K++G  + ED    +++ F  V+++     +G GLG++I ++ +++  G + I S  DEG
Sbjct: 1050 KDSGIGMSEDFLPKIYDAFTRVNSSTVSGIQGTGLGMAITKNIVDMMDGSIDIKSKVDEG 1109

Query: 781  VTTI 784
               +
Sbjct: 1110 TDVV 1113


>gi|239993827|ref|ZP_04714351.1| sensor protein BarA [Alteromonas macleodii ATCC 27126]
          Length = 983

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 9/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA  +K+ F+ ++S+E+R+PL  I+GF+  L  +   SL + Q + V  ++ ++  LL +
Sbjct: 367 KASNVKSQFLANMSHEIRTPLNAILGFSKELNNA---SLPTDQQEQVRIVNTAADNLLTI 423

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VNDILD + ++AG +++N      N LL E+   +A   H   I             + D
Sbjct: 424 VNDILDFSKIEAGKLQINNQPFSPNKLLEEMVTIMAKSSHSKRIEFVFDLHPLPEKLIGD 483

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVF 739
             R+ Q+ + +LSNA+ F+S G+     + R     I     +V++ G  I     K +F
Sbjct: 484 VFRIKQVLNNLLSNALKFTSSGTITFSVSGRSLPHGIHEVNITVEDTGIGISRQDRKKLF 543

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           N F  V +A     +G GLGL I    + L  G +++ S     +T N  +
Sbjct: 544 NAFSQVDDALNRNYQGTGLGLVISRELVRLMNGDLTLKSVLGQGSTFNVSL 594


>gi|254479591|ref|ZP_05092901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034465|gb|EEB75229.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 571

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 4/228 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K D+++  FV +VS+ELR+PL  I  + + L  + + +  SK+  ++  I   +  +  L
Sbjct: 341 KLDQMRKEFVANVSHELRTPLATIKSYVETLLYNDVDTEYSKK--FLRIIETETDRMTRL 398

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V D+L L+ +D+    L       N+++  V  S++ +  +    + +     L     D
Sbjct: 399 VKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVD 458

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           + ++ Q+   I++NA+ ++ +G  + +  A D     F+VK+NG  IP++    +F RF 
Sbjct: 459 KDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEGVTFTVKDNGIGIPKEDLPRIFERFY 518

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            V  A   +  G GLGLSIV+  + LH G V I S     T +  ++P
Sbjct: 519 RVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLP 566


>gi|85705750|ref|ZP_01036847.1| hypothetical protein ROS217_10632 [Roseovarius sp. 217]
 gi|85669740|gb|EAQ24604.1| hypothetical protein ROS217_10632 [Roseovarius sp. 217]
          Length = 504

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 145/355 (40%), Gaps = 38/355 (10%)

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL--FKEEIKKRMI---SS 255
           S    VW  D  G ++W N S +           +  G    L      ++ R+      
Sbjct: 155 SAPLPVWIMDAVGTVIWQNDSARAIAPRH---TARLTGPPDDLPDLGGTLRTRLTLTGEG 211

Query: 256 SALEKNFCETVSTLEHGN-NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            A ++++   V+  E G  + ++ I R++ +            E    D +    +   +
Sbjct: 212 GAADQSYDLHVTRTESGTIHYAFDITRLIRA------------ETAQRDFVQTLSKTFAD 259

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           LT  + +FD+ + L   N +  +L  +   FL+  PS     + LR    +PE  N+ +W
Sbjct: 260 LTAGLVVFDRAKTLAVFNPALTDLTSLSPEFLSARPSLFGFFDALRDRMVMPEPKNYASW 319

Query: 375 KENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
           +  I  + KS+    + + W LP+GQT  V    +P G   +MFE+++++V +  ++   
Sbjct: 320 RGQIADMVKSATGGLYHEVWTLPSGQTYRVTGRPHPDGAVAFMFEDISLEVSVTRRHRLQ 379

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           + +    ID L +G+AV   DGR+   N  F  +     +       + ++ + CS  Y 
Sbjct: 380 MDLHQSVIDRLEDGIAVLAQDGRLLFCNTTFGEMLGIAPDVTFAEMRLHDVISACSARYP 439

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-------LEYSIIPLPNAQTML 540
           +   W      IT+     + L  TL    DS         +  ++PL   Q ML
Sbjct: 440 DPGLWPEIEDRITT-----RRLVATLH---DSAGPPGQKGADVRVVPLGRGQFML 486


>gi|150389840|ref|YP_001319889.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949702|gb|ABR48230.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 773

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 137/269 (50%), Gaps = 21/269 (7%)

Query: 537 QTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + M T  ++TD    E  L EK        E    A++ K+ F+ ++S+E+R+P+  I G
Sbjct: 360 RMMGTLEDITDRKIIEEELKEKYKQLELLKEEAENANKAKSQFLANMSHEIRTPMNGIFG 419

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL+++ +G+   +Q++Y+  +  S+  L  ++NDILD++ +++G  KLN     L +
Sbjct: 420 VVQLLESTDVGA---EQNKYINMLKESTHTLAGIINDILDISKIESGTFKLNNEPFNLTE 476

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++ +   +    +   + +    D  +    + D  +L QI + ++SNA+ ++ +G  V
Sbjct: 477 MISSIYHGLLVDGNAKGLEVGYYLDPNINPQVIGDELKLKQILTNLISNAVKYTEQG-FV 535

Query: 709 ILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
             +  R + D       F+VK++G  I +   + +F  F    ++ R + +G GLGL+I 
Sbjct: 536 SFRVNRISFDEHTEKIQFNVKDSGIGIKDGFKEKIFEDFSQEDSSTRKKYQGTGLGLAIS 595

Query: 762 ESFINLHGGHVSISSS-DEG-VTTINCRI 788
           ++   L  G +S  S   EG + T  C +
Sbjct: 596 KNLALLMQGDISFESKLGEGSIFTFTCEL 624


>gi|302916471|ref|XP_003052046.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732985|gb|EEU46333.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 2624

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 17/248 (6%)

Query: 550  RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +A+ A  E    ++ A+E    K+ F+ +VS+ELR+PL  +IG ++LL+ S    L+  Q
Sbjct: 1919 KAKDAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS---DLDKDQ 1975

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +  + I  S+ +LL ++NDILD + ++A  MKL        D++ EV ++++    E  
Sbjct: 1976 LEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKT 2035

Query: 667  IR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718
             +  +K++ D  L   +   D  RL Q+   ++ N++ F+  GS  I     K  +++  
Sbjct: 2036 SKKNVKIVQDINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETKEHAM 2095

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSIS 775
              F V++ G  IP      +F  F        R+  G GLGLSI +S I  +  G + + 
Sbjct: 2096 LTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLE 2155

Query: 776  SSDEGVTT 783
            S +   TT
Sbjct: 2156 SEENVGTT 2163


>gi|220908983|ref|YP_002484294.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865594|gb|ACL45933.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1808

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%), Gaps = 5/217 (2%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            ++IK+ F+  +S+ELRSPL  I+G+T LL++ K     +K ++ +  I  ++ +   L++
Sbjct: 1433 NQIKDEFLAILSHELRSPLNPILGWTQLLQSRKFDP--TKTNEALATIERNAKLQTQLID 1490

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            D+LD+A +  G + +N   + L  ++     ++ T      + +  +   ++G    D  
Sbjct: 1491 DLLDIAKILRGKLTMNVVPVDLAFVIEAAIDTMRTAAVAKEMTLHAVLP-QIGRVSGDSA 1549

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            RL QI   +LSNA+ F+     V ++  R+      ++ + G  I  D    +F  F   
Sbjct: 1550 RLQQIVWNLLSNAIKFTPAKGVVEVRLEREGDRAKITISDTGKGINPDFLPHLFESFRQE 1609

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
                 R+  G+GLGL+IV   +  HGG +   S  EG
Sbjct: 1610 DASTTRQYGGLGLGLAIVRHLVEAHGGTIRAESPGEG 1646


>gi|6136816|dbj|BAA85818.1| ethylene receptor CS-ERS [Cucumis sativus]
          Length = 637

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 34/269 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L ++N AL    R+A+     +N F+  +++E+R+P+  II  +        
Sbjct: 317 ESMRARDQLVDQNVALDLARREAETAIHARNDFLAVMNHEMRTPMHAIIALS---SLLLE 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E I  SS +L  L+ND+LDL+ ++ G + L+  +  L+ +  E    + 
Sbjct: 374 TELTPEQRVMIETILKSSNLLATLINDVLDLSRLEDGSLVLDMGSFNLHAIFKEALDLVK 433

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKA 712
                  + + +I    L    V D +RL+QI   I+ N + F+ +G   I      L +
Sbjct: 434 PIASVKKLSMALILASDLPICAVGDEKRLMQIILNIVGNGVKFTKEGHVSIIASVAKLDS 493

Query: 713 ARD-----------NGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            RD           +G F     VK++G  IP      +F RF     R  +   GVGLG
Sbjct: 494 LRDWRPTEFYPMQSDGQFYLRVQVKDSGCGIPPQDIPHLFTRFTQLQTRSNKTNSGVGLG 553

Query: 758 LSIVESFINLHGGHVSISS--SDEGVTTI 784
           L++ + FINL GGH+ I S   D+G T +
Sbjct: 554 LALCKRFINLMGGHIWIESEGPDKGTTAV 582


>gi|332653532|ref|ZP_08419277.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
 gi|332518678|gb|EGJ48281.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
          Length = 551

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLN 622
           + ++++  F  +VS+EL++PLT+I G  +++++   G + ++  Q +   I   +  L+ 
Sbjct: 326 QREDLRREFTANVSHELKTPLTSISGIAEIMQS---GMVKAEDVQGFASDIYQEAQRLIA 382

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV DI+ L+ +D G + +    + L  L  EV + + +   +N++ IK +  G+      
Sbjct: 383 LVEDIIRLSQLDEGAVNMEREDVDLFQLSLEVTKRLESAAQKNDVTIKTM--GRSVQVHG 440

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            R+ L ++   +  NA+ ++ +G TV +      G    SV++NG  IP +    VF RF
Sbjct: 441 VRRVLDEMIYNLCDNAIKYNRRGGTVAVTVGPVEGGVEVSVEDNGIGIPAEDQNRVFERF 500

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V  +H     G GLGLSIV+    LH G + + S+    TT+   +P
Sbjct: 501 YRVDKSHSKDISGTGLGLSIVKHGAALHDGQIRLESTPGKGTTVTLLLP 549


>gi|302325536|gb|ADL24737.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
            subsp. succinogenes S85]
          Length = 1405

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 133/244 (54%), Gaps = 14/244 (5%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YV 610
            + AL +  E  + A   K  F+ ++S+++R+P+  IIG+T+L  T  +G  N +Q + ++
Sbjct: 880  QAALEQALEMAKSASRAKTMFLNNMSHDIRTPMNAIIGYTEL-ATIHIG--NKEQVRNFL 936

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I  SS  LL+L+ND+LD++ +++G + LN     L ++++ +K  +   ++  N++  
Sbjct: 937  GKIELSSNHLLSLINDVLDMSRIESGKLNLNEKLEHLPEIIHTLKDIVQADINAKNLQFF 996

Query: 671  VISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSV 723
              S G +    V DR RL Q+   ++SNA+ ++  G ++     +   D      + F +
Sbjct: 997  ANSVGIRNEDVVCDRLRLNQVLLNVISNAIKYTPAGGSIWFSVEQKESDEDGYGVYEFRI 1056

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG 780
            K++G  + ED    +++ F  V+++     +G GLG++I ++ +++  G + I S  DEG
Sbjct: 1057 KDSGIGMSEDFLPKIYDAFTRVNSSTVSGIQGTGLGMAITKNIVDMMDGSIDIKSKVDEG 1116

Query: 781  VTTI 784
               +
Sbjct: 1117 TDVV 1120


>gi|284053654|ref|ZP_06383864.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 800

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 13/233 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L+  D++KN F+ + S+ELR+PL   IG  + +     GSL   Q + +  I+
Sbjct: 428 LEAKNAQLQHLDKLKNEFLANTSHELRTPLNGTIGIAESMLDGATGSLTEIQRKNLLTIA 487

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRIKVI 672
            +   L NL+NDILD + +    ++L   +I L +L+ EV  +++  +  ++    I  I
Sbjct: 488 QTGRRLANLINDILDFSKLRHNHIELQLKSIRLRELV-EVVLTLSQPLIKYKQLEIINTI 546

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFI-FSVKN 725
           SD  L   +AD  RL QI   ++ NA+ F++ G+  I     D+       ++I  ++ +
Sbjct: 547 SD-NLPPAMADENRLQQILHNLIGNAIKFTNAGTIEISAVELDSHGETEKPEWIEITISD 605

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  I ED    VF  F     +   Q  G GLGL++ +  + LHGG + + S
Sbjct: 606 TGIGIQEDKIDRVFESFEQADGSTARQYGGTGLGLAVTKKLVELHGGKIWLES 658


>gi|295688464|ref|YP_003592157.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430367|gb|ADG09539.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 696

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 119/241 (49%), Gaps = 11/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+ +R E  + E   A   A++ KN F+ ++S+E+R+PL  +IG    L  +   +L 
Sbjct: 296 DVTERLRIEAEMAEARRAAETANKAKNDFLANMSHEIRTPLNGVIGIAAALGET---ALT 352

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q++ V+ I  S   L  LV+DILD++ ++AG M +      L+ +L+ +      +  
Sbjct: 353 PRQAEMVDLIRRSGETLERLVSDILDVSKIEAGQMTIQTQAFDLDGVLDGLLDVTRLRAK 412

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E  + ++V     + G F+ D  R+ Q+ S ++SNA+ F+ +G   +     D  D    
Sbjct: 413 EKGVGVRVERGPSVSGGFLGDSVRIGQVLSNLMSNAVKFTDRGEVTVRIDVEDRDDGQAS 472

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                V++ G        + +F RF        RR  G GLGLSI  + + + GG ++  
Sbjct: 473 LLCVEVEDTGVGFDAAKGEMIFQRFSQADSTITRRFGGSGLGLSISRTLVEMMGGAITAR 532

Query: 776 S 776
           S
Sbjct: 533 S 533


>gi|168699062|ref|ZP_02731339.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 682

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 14/238 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  L  + + L  AD  K+ F+  +++ELR+PL  +     +L+++K  S +   ++ 
Sbjct: 296 RLETELRLRAKELADADRRKDEFLAMLAHELRNPLAPVRNAVYVLQSTK--SDDPDVARL 353

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS----IATKMHEN 665
              +      + +LV+D+LD++ + +G + L+   + L D +    ++    I ++ HE 
Sbjct: 354 TGILGRQVGQMAHLVDDLLDVSRLTSGKVTLHRERVALADAIARAVETARPLIESRRHE- 412

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + + V  D       AD  RL QIF  +L+NA  ++  G  + L AAR+ G  +  V++
Sbjct: 413 -LIVSVPPDPI--PLDADPTRLTQIFGNLLNNAAKYTDPGGRIELSAAREGGGAVVRVRD 469

Query: 726 NGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           NG  +  +M    F+ F        R Q  G+G+GL++V + + LHGG V   S+  G
Sbjct: 470 NGIGLSPEMLLRAFDLFTQEPRTLDRAQ-GGLGIGLTLVRNLVELHGGSVEAHSAGPG 526


>gi|157369035|ref|YP_001477024.1| hybrid sensory histidine kinase BarA [Serratia proteamaculans 568]
 gi|157320799|gb|ABV39896.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568]
          Length = 906

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     ++  Q+ Y++ I  S+  LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTE----MSVTQTDYLQTIERSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L +    L + L+EV   +A   HE  + + + + +      
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+  G+  I   L+  +D   +    + + G  I E    
Sbjct: 402 IGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGQQDRQMELEVQIHDTGIGISERQQS 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +   S
Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHS 503


>gi|222053126|ref|YP_002535488.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221562415|gb|ACM18387.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 516

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 123/266 (46%), Gaps = 35/266 (13%)

Query: 532 PLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           PL NA   LT  V +   + A +AL ++ E           FV  +S++L++P+T ++G 
Sbjct: 232 PLFNASGQLTGSVEIIRDISAYKALEQEKE----------DFVSMLSHDLKAPITAVVGS 281

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            DL++  +LG +N  Q +Y+E    S   ++ +++ +L +   +AG M +++   + + L
Sbjct: 282 VDLVREGRLGPVNEDQREYLESSMESCAEMVEMIDTLLGVHKFEAGKMLMHFKEEMPSQL 341

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +        T      +R+       L +  ADR    ++   ++SNA+ F+++G  + +
Sbjct: 342 IQRTMTRFLTVARRAQLRLFATVQDHLPAISADRATFSRLLGNLISNALKFTAEGGEIEI 401

Query: 711 KA--------------AR--------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NA 746
            A              AR        D      +V++ G  I ED  + +F+RFV   N 
Sbjct: 402 SAVAVNDPETIRGKIPARYGAQKLTLDKPMVQITVRDTGEGIAEDSLEDIFDRFVQARNR 461

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHV 772
            +G+  G GLGL+     ++ H G +
Sbjct: 462 RQGKSSGTGLGLTFCRKVMDAHQGFI 487


>gi|330938839|gb|EGH42358.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 402

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 148 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 197

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 198 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 257

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E K     +  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 258 PCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 317

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 318 PNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 375

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 376 IVQLHGGRMGVYSRPGQGTQFYMALP 401


>gi|300742620|ref|ZP_07072641.1| sensor histidine kinase TcrS [Rothia dentocariosa M567]
 gi|300381805|gb|EFJ78367.1| sensor histidine kinase TcrS [Rothia dentocariosa M567]
          Length = 521

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 10/223 (4%)

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+   S+ELR+PL  I G++D+L+ ++   L       +  I + +  +  LV D+L L
Sbjct: 296 AFIADASHELRTPLAAIKGYSDMLRWTE--PLADGGQSSLARIDSQTERMSRLVEDLLLL 353

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A +D G  +  +  I L +LL E    +     ++  R+ V  +      +ADR ++ Q+
Sbjct: 354 ARLDEG-REPKFENIDLTELLVESVSDMQAAARDHIWRMDVPDEPV--EMIADRSQIQQV 410

Query: 691 FSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNA 746
              +LSNA   + +G+TVI  L+ + D  + + ++ +NG  I  +    +F+RF     A
Sbjct: 411 ILNLLSNARKHTDEGTTVIAGLRVSADRREALMTIVDNGPGIDPEFAPKIFDRFARADKA 470

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G     GLGL+IV++ +  HGG +S+ S   G T  + R+P
Sbjct: 471 RSGSDGTTGLGLAIVQAIVQAHGGLISVRSR-PGRTEFSVRLP 512


>gi|229515046|ref|ZP_04404506.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae TMA 21]
 gi|229347751|gb|EEO12710.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae TMA 21]
          Length = 1176

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 614 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 673

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 674 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 729

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 730 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDSLRFNQIVTNLLSNAIKFTDQGR-V 788

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 789 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 848

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 849 LMNGKIEVKSEFEQGTQIQVNLP 871


>gi|229042172|ref|ZP_04189927.1| hypothetical protein bcere0027_2450 [Bacillus cereus AH676]
 gi|228727169|gb|EEL78371.1| hypothetical protein bcere0027_2450 [Bacillus cereus AH676]
          Length = 314

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI +++         +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQIRIPESTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   +++I   ++ NA+ +   G T+ ++    + ++   + + G  IP+   ++VF R 
Sbjct: 199 DHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADTEYELHIWDQGPGIPKHDLQNVFERM 258

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    TT    IP
Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIP 307


>gi|217037913|gb|ACJ76428.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 43/290 (14%)

Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKAD---EIKNSFV 573
           ++ S+ P+  PN        N+   V  ER +T+K E       A  KAD   + K++F+
Sbjct: 363 IDVSVTPIFKPNG-------NIMHYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFL 415

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PL  I+G   +++++     + +Q + ++ +  S   LL+L+NDILD + +
Sbjct: 416 ATMSHELRTPLNGILGMAQIIESN---IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKI 472

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--------NNIRIKVISDGKLGSFVADRQ 685
           +   ++LN+++   ND+++ +  +  +   +        NNI  K I       F+ D+ 
Sbjct: 473 EQNKLELNHASFYFNDVIDPIANTYLSICEDKGLQFIINNNINEKTI-------FLGDKP 525

Query: 686 RLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           R+ QI   ++SNA+ F+ KGS  +        +        V++ G  I +   K +F  
Sbjct: 526 RIRQIIFNLISNAVKFTHKGSITLNFSHTLTPKGEQAVQIKVQDTGIGIRKKRLKHIFEP 585

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+       R+  G GLGL+IV+   +   G++S++SS+   T     +P
Sbjct: 586 FIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635


>gi|220906228|ref|YP_002481539.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7425]
 gi|219862839|gb|ACL43178.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7425]
          Length = 2051

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 23/237 (9%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            EA + A   K+ F+ ++S+ELR+PL  I+G++ +L  +K  +L  +Q   +  I      
Sbjct: 1562 EAAKVASRAKSEFLANMSHELRTPLNGILGYSQILSKNK--ALTEQQQNGLNVIHQCGEY 1619

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LL L+ND+LDL+ ++A  M+L  ST  L   L  + +    +  +  I +       L  
Sbjct: 1620 LLTLINDVLDLSKIEARKMELYPSTFNLPHFLENMLEICRIRATQKQISLNYEILSPLPQ 1679

Query: 680  FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA------------------ARDNGDFI 720
            FV AD +RL Q+   ++ NA+ F+  G  V  K                   A       
Sbjct: 1680 FVHADEKRLQQVLLNLVGNAIKFTPAG-IVTFKVGYVQHWPSAPAEQSSPNQAVAQSKIR 1738

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
            F +++ G  I  +  + +F  F      GQR  G GLGL+I    + L GG + + S
Sbjct: 1739 FQIEDTGIGISPEQLEQIFQPFHRGGEPGQRTEGTGLGLAISRQLVQLMGGEIQVKS 1795


>gi|15641658|ref|NP_231290.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|153823157|ref|ZP_01975824.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|227081805|ref|YP_002810356.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae M66-2]
 gi|298498265|ref|ZP_07008072.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MAK 757]
 gi|9656167|gb|AAF94804.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|126519318|gb|EAZ76541.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|227009693|gb|ACP05905.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae M66-2]
 gi|297542598|gb|EFH78648.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MAK 757]
          Length = 1146

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIEVKSEFEQGTQIQVNLP 841


>gi|83944202|ref|ZP_00956658.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
 gi|83845069|gb|EAP82950.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
          Length = 1088

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 6/230 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K  F+  VS+ELR+PLT+I G   L+ +   G L  K    +   ++S   L+ L+
Sbjct: 620 AEKAKTEFLSTVSHELRTPLTSIKGALGLVLSGATGQLPDKMKGLITIAASSCDRLILLI 679

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKVISDGKLGSFV 681
           N ILD+  ++ G +     T+ L++ LN      Q  A +   +  R+    D  + ++ 
Sbjct: 680 NSILDMEKIETGTLDFRMKTLNLSETLNTALVPNQLYAERAGVSLRRVDTPDDDVMLTY- 738

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +RL+Q+   +LSNA+ FS  G  +++           S+++ G+ I      SVF +
Sbjct: 739 GDSKRLVQVLDNLLSNAVKFSEHGGEILIALHAVGDQLRISIRDFGTGIQAAAQASVFEK 798

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        R   G GLGL+I +  I+ H G ++  S ++  T I   +P
Sbjct: 799 FTQGDSSDSRSKGGTGLGLTIAKVIIDHHQGQITFFSREDVGTEIIISLP 848


>gi|253570813|ref|ZP_04848221.1| predicted protein [Bacteroides sp. 1_1_6]
 gi|251839762|gb|EES67845.1| predicted protein [Bacteroides sp. 1_1_6]
          Length = 799

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 123/259 (47%), Gaps = 8/259 (3%)

Query: 535 NAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +A T+L +V    ++    + ++ L   ++A R+    +   +  ++++LRSPLT I G+
Sbjct: 278 SALTILLYVIIHRDLKRKYKYQKELEASDKANRELLRSRREMMLSIAHDLRSPLTTINGY 337

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T LL   K  SL  K   Y+E I  SS  +L LV+ +++   +D   ++ + S   L  L
Sbjct: 338 TRLLPREKDSSLRIK---YIENIRHSSEYMLLLVDTLMEFYLLDTEQIQPHLSFYNLESL 394

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             E+  +   +  + ++R      G       DR  L QI + +L NA  F+ KG+ + L
Sbjct: 395 FKEIIDNHLLQARKKDLRFSYNFSGMNTIVSGDRGWLQQIVNNLLGNAFKFTDKGN-IHL 453

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
            A   NG+  F V++ GS + E   K +F  F    +     G GLGL+I    +   GG
Sbjct: 454 NAEYGNGELRFWVQDTGSGMSEPETKKIFTAFARLGNASDISGFGLGLTISHRLVTQMGG 513

Query: 771 HVSISSSDEGVTTINCRIP 789
           ++ + S     +T    IP
Sbjct: 514 NIQVKSHPGKGSTFTVMIP 532


>gi|148977989|ref|ZP_01814541.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145962809|gb|EDK28082.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 1224

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 16/235 (6%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           ++ K+ F+ ++S+E+R+P+  IIG + L LKT     L   Q  Y+  +  SS  LL L+
Sbjct: 477 NQAKSDFLANMSHEIRTPMNAIIGMSYLALKTD----LTKAQRNYIHKVKLSSDTLLGLI 532

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           NDILD + ++AG + +      L ++L+ +   +  +  E  + + +  D  + +  + D
Sbjct: 533 NDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASERGLELLIQVDRDVPTNLIGD 592

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVF 739
             RL QI   + +NA+ F+ KG   I +  A  +GD I   FSV ++G  + ++    +F
Sbjct: 593 PLRLGQILINLSNNAVKFTEKGEVKISILVAERHGDDIKLKFSVSDSGIGMTQEQADKLF 652

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT---TINCRI 788
           N+F        R+  G GLGL+I +    L GG + +S+   +G T   TI+ R+
Sbjct: 653 NKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVSTELGKGSTFSFTISTRV 707


>gi|2852991|gb|AAC02213.1| ethylene receptor homolog [Solanum lycopersicum]
          Length = 754

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 130/264 (49%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  + LL+ +  
Sbjct: 329 ESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 386

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ L  EV   I 
Sbjct: 387 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVHSLIK 445

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  +V  D +RL+QI   ++ NA+ FS +G+  I         
Sbjct: 446 PIASVKKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKEGNVSISAFVAKSDS 505

Query: 710 LKAARDNGDFIFS----------VKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+  R    F             +K+ G  I P+D+  ++F++F  +         G GL
Sbjct: 506 LRDPRAPEFFAVPSENHFYLRVQIKDTGIGITPQDI-PNLFSKFTQSQALATTNSGGTGL 564

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 565 GLAICKRFVNLMEGHIWIESEGLG 588


>gi|84623382|ref|YP_450754.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
 gi|84367322|dbj|BAE68480.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
          Length = 1191

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 17/239 (7%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQL 906

Query: 668  RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSV 723
                  D  L  +   D  R+ QI   +L NA+ F+ +GS  +  AA            V
Sbjct: 907  AFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTERGSVHLRIAALPQHTQQGIRVEV 966

Query: 724  KNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V++SS
Sbjct: 967  RDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGSVTVSS 1022


>gi|148263612|ref|YP_001230318.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
 gi|146397112|gb|ABQ25745.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
          Length = 520

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +TE+ E     ++IK   +  VS+E+R+PLT ++G+T+L+ T++L     K+  Y++ I 
Sbjct: 289 ITERKEI----EQIKEGMLSAVSHEMRTPLTALMGYTELMLTNELSMPQLKE--YLKVIQ 342

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L+ + LD+    A      +  + +  L+ E            N RI V   
Sbjct: 343 READKLNELIGNYLDIQRQKASRSTAGFRPVNIRPLMEETADLFGAA--SRNHRIIVDCP 400

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L   + D + L ++   ++SNA+ FS  G  V L A+ + G+    V++ G  IP + 
Sbjct: 401 VDLAPVLGDEKLLRRMLEMLVSNAVKFSPNGGEVCLGASMEAGNITILVRDQGVGIPAEE 460

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + +F  F  V N  R    G+GLGL++V+     HGG V   SS
Sbjct: 461 LEHIFELFYRVDNTDRRMFGGIGLGLALVKEIAIGHGGRVWAESS 505


>gi|228984189|ref|ZP_04144371.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775476|gb|EEM23860.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 883

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  S
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 588

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF------------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +   + +  +               
Sbjct: 589 DMIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKDWITI 648

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 708

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 709 EGSTFTVYIPN 719


>gi|254520625|ref|ZP_05132681.1| two-component system sensor histidine kinase [Clostridium sp.
           7_2_43FAA]
 gi|226914374|gb|EEH99575.1| two-component system sensor histidine kinase [Clostridium sp.
           7_2_43FAA]
          Length = 578

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 2/213 (0%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L++ + IK  F+  +S+EL++PLT+I+    L+    +GSLN KQ   VE I      L
Sbjct: 348 GLKELEIIKADFIGTISHELKTPLTSIMMGVGLINDKNIGSLNDKQRDIVETIKEDVQKL 407

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV+++L ++ + +     N     + +L+     +      E  I +K+  + +L   
Sbjct: 408 NDLVSNLLKISHIQSNKTSFNIKKSDIKELIKSCLYNFIPLAKEKEIELKLSLEERLPEV 467

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +++  + + +LSNA+ ++ +GS  I    ++N D + SV + G  IP +  + VF 
Sbjct: 468 MMDEEKIKWVLNNLLSNAVRYTERGSIKIDGYIKEN-DILVSVTDTGRGIPSNYLEKVFE 526

Query: 741 RFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           RFV            GLGLSI +  + +HGG +
Sbjct: 527 RFVRVEGFEIPEESTGLGLSIAKEIVEIHGGKI 559


>gi|224535251|ref|ZP_03675790.1| hypothetical protein BACCELL_00112 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523136|gb|EEF92241.1| hypothetical protein BACCELL_00112 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 981

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 3/218 (1%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F  ++++E+++PLT I     L +  K  + ++     ++ I  S+  L NL+N  LDL 
Sbjct: 480 FHTNIAHEIKTPLTLISA--PLQELVKHPTDDTFIISRLQIIQQSTNRLSNLINQFLDLR 537

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +D   + L+     +  L   + +S      +  I  +  SD        DR ++ +I 
Sbjct: 538 KIDKEALPLSIQETNIAHLFEAILESFRPLAEQKGINFQYFSDSSEIQGWIDRDKVSKIL 597

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + +LSNA+ F+ KG  + +  A++     F+V++NG  I E     +F+RF     + Q 
Sbjct: 598 NNLLSNAIKFTQKGHQITVFIAKEEDHIFFTVEDNGCGISEQDLPHIFDRFYQCGTQ-QS 656

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G G+GLS+V   I LH G +S++S+ E  TT N  IP
Sbjct: 657 SGTGIGLSLVYELIQLHHGKISVTSTIEVGTTFNVSIP 694


>gi|66043534|ref|YP_233375.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63254241|gb|AAY35337.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 595

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E K     +  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 PNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|78046300|ref|YP_362475.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034730|emb|CAJ22375.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 603

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 179/402 (44%), Gaps = 24/402 (5%)

Query: 410 GGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G   W+ +  +  ++  E +Y          +  + E + +     RI L NPAF  L+ 
Sbjct: 199 GTVTWLLQRQIRRRLAAEQEYLRANGRASSVLQTVREPIVLLDASQRIVLHNPAFADLYG 258

Query: 469 TEE--NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            EE  N L P   + +     ++ +       L    +  F+ E+++  G L  +   ++
Sbjct: 259 LEERGNELMPLEEVGDGVWRDAQIHQRLADVLLRGRELWDFEHEQRAADGVLRTM---LI 315

Query: 527 EYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALR-KADEIKN------SFVQH 575
               +PLP++      ++T  +++    A+  + E N  +  K +++        +F   
Sbjct: 316 NARRMPLPDSTDEDVVLMTVSDISLQKAAQLRIQELNRQMEGKVEQVSEVNRELEAFSYS 375

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS++LR+PL ++ GF+D L      + + K   Y+E IS+S+  + +L++D+L  + +  
Sbjct: 376 VSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASLIDDLLVYSRLGR 435

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKI 694
           G ++L    + +  L+ E +  + + +   N   +V      L   VAD   + Q++  +
Sbjct: 436 GALRLQ--AVDMQSLVAETRAILDSNVQSENTGHRVEWHIAPLPVLVADENMMRQLWMNL 493

Query: 695 LSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           L NA+ +S+K     ++ +     +G   FSV++NG+    +    +F  F       + 
Sbjct: 494 LGNAVKYSAKREVAKIEVSYTPMSDGGHQFSVRDNGAGFDMEYSGKLFGVFQRLHKASEY 553

Query: 752 RGVGLGLSIVESFINLHGGHV-SISSSDEGVTTINCRIPSKE 792
            G G+GL+ V   +  HGG V +    DEG T      P+ E
Sbjct: 554 AGTGIGLASVRRVLTRHGGRVWAEGVVDEGATFYFVLPPALE 595


>gi|32476846|ref|NP_869840.1| light-regulated histidine kinase 1 [Rhodopirellula baltica SH 1]
 gi|32447394|emb|CAD78983.1| light-regulated histidine kinase 1 [Rhodopirellula baltica SH 1]
          Length = 582

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 158/382 (41%), Gaps = 43/382 (11%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G IW +   T +V    K+  L+   G+  +   E V+                      
Sbjct: 215 GGIWNWNRQTDEVQYAPKFRELLGYAGDDTESFPENVSA--------------------S 254

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            +R+    H  +IA    R  N+      F+      D E           + ++ + S 
Sbjct: 255 RDRI----HAEDIAIFADRLANQKQTRKPFSVEFRMLDHE--DCYRWFRTHAHTLFDNSG 308

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            P+  A T+    N+ DS + E  L E N+ L++       F    S++L+ PL  I GF
Sbjct: 309 TPIRTAGTIF---NIEDSKKYEHELQESNQELQR-------FAFAASHDLQEPLRAITGF 358

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + LL+     SL+ K   Y+ +I   +  +  L++DIL L+ V  G  +L ++ I L+D 
Sbjct: 359 SQLLQQRHTNSLDEKGQGYLRHIVEGAGRMKTLIDDILTLSRV--GQSELEFAEINLDDC 416

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +    Q+++  + E    I++   GKLG        L+++F  ++SNA+ F     T  +
Sbjct: 417 VQMALQNLSQLIRETEPEIRI---GKLGIVHGHEGFLVELFQNLISNAIKFRKPDQTAKI 473

Query: 711 KAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                  D     +V + G  I +     VF  F     R Q  G G+GL++ +  +  H
Sbjct: 474 DIDSHTKDSRINITVADQGIGISKTHHAQVFELFKRLHRREQIPGTGIGLALCKRIVERH 533

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
            G +S+ S +   +T    +P+
Sbjct: 534 HGTISLISEEGEGSTFRVSLPA 555


>gi|312892001|ref|ZP_07751502.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
 gi|311295498|gb|EFQ72666.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
          Length = 1605

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 127/246 (51%), Gaps = 21/246 (8%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGS 601
            +VT+ V+A R  TE  E + K DE    F+   S+EL++P+T++ G   +L+   ++ G 
Sbjct: 1365 DVTELVKA-RETTE--ELMHKKDE----FLSIASHELKTPITSLKGSLQILQRIMAREGG 1417

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             N+    +V   +  +  L  LV+D+LD+  + AG + LNY T     L+ EV + +  +
Sbjct: 1418 KNTVMD-FVGKANNQTNKLTTLVDDLLDVTKIQAGKLLLNYETFDAVQLVKEVLEEV--R 1474

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
              E      +  +G L +  ADR RL Q+ +  L+NA+ +S KG  VIL  +    +F  
Sbjct: 1475 AQEGTHEFILQGEG-LITITADRTRLEQVITNFLTNAIKYSPKGDKVILNCSLFENEFKL 1533

Query: 722  SVKNNGSSIPEDMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +V++ G  IPE     +F+RF     S+ H     G+GLGL I    I  H G + + S+
Sbjct: 1534 TVQDFGIGIPEAKKDYLFDRFYRVQESSTHFS---GLGLGLYISAEIIKRHRGQIGVESA 1590

Query: 778  -DEGVT 782
              EG T
Sbjct: 1591 IGEGAT 1596


>gi|309790686|ref|ZP_07685237.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227280|gb|EFO80957.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 830

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 9/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSL 602
           +VT+      AL    E    A+  K++F+  +S+ELR+PLT IIG++ LL +   +G  
Sbjct: 434 DVTERHYRSEALLRAKEDAEAANRAKSTFLSMMSHELRTPLTAIIGYSQLLGQLMTVGDY 493

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              +S  + +I  S   LL L+ND+++L+ +D+G   L+   + + DL+ E    +   +
Sbjct: 494 EGVKSD-LHHIYTSGKHLLALINDVIELSRIDSGQRNLDMRPVNIVDLVTEAVSMVRPLV 552

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDF 719
             N   +++     +   + D  ++ QI   +L+NA  F+  G    T I     +    
Sbjct: 553 TRNRNTLQIECPLDIPIVITDSLKVRQIILNLLNNAAKFTENGEITFTTIYDPQGEVPTL 612

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           IF + + G  I +     +F+ FV       RR  G GLGL++      + GG +S+ S+
Sbjct: 613 IFQIADTGIGIDQRQIPRIFDPFVQVDEALNRRYEGTGLGLALCRRLCEVLGGEISVQST 672

Query: 778 DEGVTTI-NCRIP 789
             GV +I   R+P
Sbjct: 673 -LGVGSIFTVRLP 684


>gi|303248550|ref|ZP_07334807.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490080|gb|EFL50001.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 695

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 21/226 (9%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  I+G   +L  +    L+  Q ++++ I  S++ LL L+ND+LD +
Sbjct: 456 FLANISHEIRTPMNGILGMAQILGQT---GLSDDQKEFLKDIEGSASSLLALINDLLDFS 512

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
            ++A  ++L +    L  +L  V+ ++     E  + + V IS       + D  RL Q+
Sbjct: 513 RIEAERVELAHEAFGLRAVLASVEAAMGAPAREKGLELSVDISPDVPDMLLGDADRLRQV 572

Query: 691 FSKILSNAMDFSSKGSTVI----LKAARD--------NGDFIFSVKNNGSSI-PEDMCKS 737
            + ++ NA+ F+  G  V+    ++A R           + +FSV + G  I PED  + 
Sbjct: 573 LTNLVGNAIKFTDHGGVVVQAQCVEACRPAEAITRGMRQELLFSVSDTGIGILPEDTSR- 631

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEG 780
           +F  F        RR  G GLGL+I    + L GG + + S  D+G
Sbjct: 632 IFEAFTQADGSYTRRFGGTGLGLAITRRLVALMGGELGVDSVPDQG 677


>gi|295103591|emb|CBL01135.1| PAS domain S-box [Faecalibacterium prausnitzii SL3/3]
          Length = 1044

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 154/326 (47%), Gaps = 48/326 (14%)

Query: 500 FAAIITSFDDE--RKSLQGTLELLSDSVLEY-----------SIIPL-----PNAQTMLT 541
            AA+   F  E  RK+LQG  ++      EY           S IPL        + +L 
Sbjct: 447 LAAVDALFSPENIRKNLQGENDIYK---FEYCSIDENTYKIASFIPLEWDGTKLVKALLA 503

Query: 542 FVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++V+   +AE    +AL +   A   A   K  F+ ++S+++R+P+  IIG T +    
Sbjct: 504 SMDVSQEKKAEIESHKALKDAYRAAENASRAKTEFLSNMSHDIRTPMNAIIGLTAI---- 559

Query: 598 KLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDL 650
             G+    Q + VE    I+ SS  LL L+N++LD+A +++G M L      L    ++L
Sbjct: 560 -AGANIESQDRVVECLGKITKSSRHLLGLINEVLDMARIESGRMSLAEEDFSLPELVDNL 618

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L   K +I    H+  + ++ I      +   D  R+ Q+F  ++SNA+ ++  G  + L
Sbjct: 619 LTLTKPAIDEHKHQLEVHVEHIEH---EAVCGDSLRIQQVFVNLMSNAVKYTPDGGNITL 675

Query: 711 ------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVE 762
                     + G + FS+++NG  +  +  K +F  F  ++ HR  + +G GLG++I  
Sbjct: 676 TIKEKPNGFSELGCYEFSIEDNGIGMTPEFQKIMFEPFSRADDHRTTKVQGTGLGMAIAR 735

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
           + +NL  G++ + S+    T I   +
Sbjct: 736 NIVNLMNGNIQVESAPNKGTKITVTV 761


>gi|260172086|ref|ZP_05758498.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1341

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L EK + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I 
Sbjct: 805  LREK-QYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIH 861

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D
Sbjct: 862  KNAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHAD 921

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +      DR ++ ++ + +LSNA  ++S G T+ ++ A    + +FSV +NG+ I E+ 
Sbjct: 922  CEQCLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEED 981

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF    + GQ  G G+GL++ +  +  H G +++ S
Sbjct: 982  YVKIFERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVES 1023


>gi|229189197|ref|ZP_04316221.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
 gi|228594241|gb|EEK52036.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
          Length = 896

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTIKDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-------ILKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS         I   + D    + D++  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIEISNLSHDMQSISNDWMKI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGISKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|157372575|ref|YP_001480564.1| aerobic respiration control sensor protein ArcB [Serratia
           proteamaculans 568]
 gi|157324339|gb|ABV43436.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568]
          Length = 779

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 119/231 (51%), Gaps = 10/231 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   N +Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---NDEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   +     L +++      +    ++ 
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFLADLENLSGLLVQPKGLQF 380

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +     L    +AD  RL QI   ++ NA+ F+ +G  V+     +    +F V+++G 
Sbjct: 381 VMEPQQPLPQQIIADGTRLRQILWNLIGNAVKFTPQGQIVVRVRREEQDRLVFEVEDSGM 440

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            IP+D    +F  +  V + H G+   G G+GL++ +      GG +++SS
Sbjct: 441 GIPQDEQDKIFAMYYQVKDQHGGRPATGTGIGLAVSKRLAQSMGGDITVSS 491


>gi|17232819|ref|NP_489367.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17134466|dbj|BAB77026.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 559

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 26/248 (10%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  VS+ELR+P+T IIG+  +L+T  L    ++ S  +E I  ++ + + L+ D+L
Sbjct: 300 KDDFLAIVSHELRTPMTAIIGWAGMLQTGALD--EARASLALETIERNANLQMQLIEDLL 357

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ +  G + L+   + L +++ +  + + +      I+IK   D  +     D  RLL
Sbjct: 358 DISRIVRGELSLSIDLVDLVEVITDAIEVVQSLADNKGIQIKSRPDTSIDKIWGDSDRLL 417

Query: 689 QIFSKILSNAMDFSSKGST--VILKAARDNGDFIFS-------------------VKNNG 727
           Q+   +L+NA+ F+  G    V L      GD+                      V + G
Sbjct: 418 QVVLNLLTNAIKFTPNGGRIEVCLSKELGTGDWGLGNRGDETNVSCPIPHYAQIQVIDTG 477

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTI 784
             I  D    +F RF    ++H    +G+GLGL+I    + LHGG +   S   G   T 
Sbjct: 478 QGISADFLPHIFERFRQADSSHTRSNKGLGLGLAIARHLVELHGGTIQAQSQGIGQGATF 537

Query: 785 NCRIPSKE 792
             ++P  E
Sbjct: 538 TVKLPITE 545


>gi|113460548|ref|YP_718612.1| sensor histidine kinase [Haemophilus somnus 129PT]
 gi|112822591|gb|ABI24680.1| sensor histidine kinase [Haemophilus somnus 129PT]
          Length = 618

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 121/235 (51%), Gaps = 7/235 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V++ + AER L+     + K  + K + +  +S+ELR+PL  IIG + +L   K   L  
Sbjct: 98  VSERILAERKLSVALSEIEKTSQDKTALMTTISHELRTPLNGIIGLSQILLDDK---LTE 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  Y++ I+ S+  L ++ +DI+DL  +DA  ++L+Y    L   LN++         +
Sbjct: 155 QQRNYLKTINVSAISLTHIFSDIIDLEKIDANRIELHYQPTNLCSFLNDITNFATLMAAQ 214

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFS 722
             ++ +++ D  L  ++  D  RL QI   +++NA+ F+  G  + LK +R   D F F+
Sbjct: 215 RKLKFELVCDKDLPDWLMLDSARLSQILWNLINNAVKFTPAGK-IKLKVSRLTDDTFSFA 273

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           + + G  I +     +F  +        +  G G+GL++ ++   L GG +++ S
Sbjct: 274 LSDTGVGIAKGELDKIFTMYYQVQETDHKPIGSGIGLAVSKAIAGLMGGDLTVES 328


>gi|312868944|ref|ZP_07729124.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus oris PB013-T2-3]
 gi|311095508|gb|EFQ53772.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus oris PB013-T2-3]
          Length = 376

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 24/242 (9%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-------YVEYISA 615
           RK ++ K+  + +VS++LR+PLT+IIG+        LG +  KQ Q       Y      
Sbjct: 144 RKIEKSKDELITNVSHDLRTPLTSIIGY--------LGLIEDKQYQSEEDILKYTHTAYE 195

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVIS 673
            +  + NLV D+ +   V      +N   I LN LL ++  S   +     I I  KV+ 
Sbjct: 196 KAKQMKNLVEDLFEYTKVQQHGAPVNIMRIDLNQLLEQLTASFELEGQHRGIEISSKVVP 255

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
           +  +    AD ++L ++F+ +++NA  + + G++ I   AR   D +  +V N+G+ IP 
Sbjct: 256 NPLM--IEADPEKLGRVFNNLVANAFKYGN-GASYIRVDARQRADQVEVTVANDGTPIPA 312

Query: 733 DMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F RF  + A R +   G GLGL+IV+S ++LH G V++ +SDE  T     +P 
Sbjct: 313 QSLDHLFERFYRAEASRSRATGGTGLGLAIVKSIVDLHHGTVTV-TSDENETAFVVTLPL 371

Query: 791 KE 792
           K+
Sbjct: 372 KQ 373


>gi|121590829|ref|ZP_01678155.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 2740-80]
 gi|121547319|gb|EAX57437.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 2740-80]
          Length = 1146

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIEVKSEFEQGTQIQVNLP 841


>gi|104781536|ref|YP_608034.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95110523|emb|CAK15231.1| putative sensor histidine kinase/response regulator [Pseudomonas
           entomophila L48]
          Length = 1093

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 26/239 (10%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISAS 616
           KN+A  +A + K++F+  +S+E+R+P+  +IG  +L L+ S+ G      +Q +E    S
Sbjct: 590 KNDA-EQASQAKSTFLAVMSHEIRTPMNAVIGLLELALEDSRRGR---SDTQALETAHGS 645

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL+L+ D+LD++ +++G M L     V  DL   VK ++  ++ E N RIK I   +
Sbjct: 646 AIGLLDLIGDVLDISRIESGHMTLQA---VATDLTGLVKATV--RVFEGNARIKGI---Q 697

Query: 677 LGSFVADRQ--------RLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVK 724
           L S + DR         R  Q+ S +LSNA+ F+ +G    T+   A+  +G  +   VK
Sbjct: 698 LRSALPDRPCWVTVDPLRFKQVLSNLLSNAIKFTDQGQIDVTLTADASSKHGLLVALQVK 757

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  I       +F+ F     +  R+G GLGL I  +   L GG +S+ S  EG+ T
Sbjct: 758 DTGKGISASDQTRLFSAFSQVGDQQNRQGAGLGLVISRNLCALMGGELSLQSI-EGLGT 815


>gi|302342923|ref|YP_003807452.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639536|gb|ADK84858.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 787

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 113/254 (44%), Gaps = 8/254 (3%)

Query: 542 FVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                D ++ ER  L   N  LR+ D++++     V ++++ PL  ++G  DLL      
Sbjct: 530 LTRARDDLQQERDRLARANSELRRLDQLRHDLTNMVVHDMKGPLAELMGNLDLLHYD--- 586

Query: 601 SLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            L+  Q  + ++        LL ++ ++LD+  ++   ++     +    L   V+    
Sbjct: 587 -LDKAQRDETLDMAEMGGQDLLRMIMNLLDIGRLEEDRLRARVQPLAFGPLAQRVRDKFT 645

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           T +    + ++V  DG     +AD   + ++   +L+NA+  +  G  V+    +D+G  
Sbjct: 646 TLIRLKGLDVRV-EDGATAPILADPDLMARVLQNLLTNALQHTDAGQIVLSARTQDDGQA 704

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           + SV + G  IP      +F +FV +    G R   GLGL+  +  +  HGG +   S  
Sbjct: 705 VISVSDTGGGIPRAAHGLIFKKFVQATEDGGPRTSTGLGLTFCKLAVEAHGGEIWFESEQ 764

Query: 779 EGVTTINCRIPSKE 792
              TT   R+P+ +
Sbjct: 765 GQGTTFFVRLPASQ 778


>gi|326789170|ref|YP_004306991.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326539934|gb|ADZ81793.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 584

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 126/243 (51%), Gaps = 10/243 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ--Y 609
           E+ L  + EA  +A++ KN  V +V+++LR+PLT+IIG+  L+K    G  + K+ Q  Y
Sbjct: 345 EKELKYQIEAQMQAEKSKNELVTNVAHDLRTPLTSIIGYIGLVKD---GGFHDKEDQVKY 401

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++     +  L  L+ D+ +L       +KL    I L++L+N++ + +     + NI I
Sbjct: 402 LDIAYTKAEKLKVLIEDLFELTKFHQQAIKLKKEKISLSNLMNQLIEELMPLASDKNIEI 461

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGS 728
           +   D    +   D Q++ ++F  ++ NA+ +S +G  + ++  R  GD I+ +V N   
Sbjct: 462 ETYIDSTGTTAEVDIQKMTRVFENLIENAIKYSPQGEAIYVE-LRAIGDKIYVAVSNAFE 520

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           +I  +     F RF     +      G GLGL+I ++ + LHGG +  ++ +E + +   
Sbjct: 521 NISPEEVSLFFERFYRADKSRNSMAGGSGLGLAIAKNIVELHGGEIG-ATINEDLISFKI 579

Query: 787 RIP 789
            +P
Sbjct: 580 GLP 582


>gi|268607932|ref|ZP_06141663.1| multi-sensor signal transduction histidine kinase [Ruminococcus
           flavefaciens FD-1]
          Length = 509

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 122/223 (54%), Gaps = 12/223 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE--- 611
           +  +++ L + +E+K +F+   S+EL++PL+ + G+    + +++  LN  + + V+   
Sbjct: 274 VVSEHDMLVRVNEMKTAFLSDASHELKTPLSAMSGYA---QNAEIELLNGGEKRSVQEKL 330

Query: 612 -YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             IS+ +  +  +V  ILD   ++ G M L  S+  L+ L+ E  ++  + +++NN R+ 
Sbjct: 331 KRISSEANRMALMVTQILDATRIEEGRMVLELSSCDLDGLVRETVETYFSVLNKNNNRLA 390

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +    +L S  AD  RL ++F  ++SNA+  +  G T+++KA  D G    +VK+ GS I
Sbjct: 391 LRIPLELPSVEADPSRLKRVFVNLISNALKHTYNG-TILIKAEADEGFIKVTVKDTGSGI 449

Query: 731 -PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            PEDM   ++ R+    H     G GLGL I +  I  HGG +
Sbjct: 450 SPEDM-PHIWERYYKGKH--SETGTGLGLFICKFIIESHGGKI 489


>gi|255514120|gb|EET90383.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 745

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 114/229 (49%), Gaps = 5/229 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL  + +      ++K+ F+  +++EL++PLTNI+GFT LL   + G +  +Q +Y++ 
Sbjct: 491 RALDTRIKRSESVGQLKSQFISDIAHELKTPLTNIMGFTKLLYDGEFGEIPEEQKEYLKT 550

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-QSIATKMHENNIRIKV 671
           I   S  L+ ++  +LD A +DA  +KL+ + I + +L N    +++        +    
Sbjct: 551 ILDESDRLMFIIMQVLDAAKLDARRVKLDLTEISMTELYNNPSIRALEESATNKGLAFDW 610

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           I         AD  R++Q+F+ ++ NA+ F+ KG   +    +        V + G  I 
Sbjct: 611 IVSYDTPIVQADLSRIIQVFTNLIGNAIKFTEKGGIKVNIYKKSRNTIACEVIDTGIGIG 670

Query: 732 EDMCKSVFNRFVSNAHRG----QRRGVGLGLSIVESFINLHGGHVSISS 776
           E+  + +F +F   + +        G GLGL+I +  ++LH G +   S
Sbjct: 671 EEDKRKIFRKFYQASKKNLTIQNGAGTGLGLAITKEIVSLHHGKIKFES 719


>gi|312110945|ref|YP_003989261.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311216046|gb|ADP74650.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 456

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 116/242 (47%), Gaps = 8/242 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L    E L+K    +N F+  +S+ELR+PLT + G+ D+ + S +G    ++++Y
Sbjct: 219 KAIQTLARDLEYLKKE---RNEFLASISHELRTPLTYVKGYADIARRSNMG--EEERNRY 273

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  +  LV D+ +LA +D    +++     L     ++   +        + +
Sbjct: 274 LSIIYEEAEHMQKLVKDLFELAKMDQHSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSL 333

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               DG +   + D++R  Q+   +L NA+ +S +GS V +   ++    +  V + G  
Sbjct: 334 VYYCDGSITVHI-DQKRFEQVMMNLLDNALKYSDQGSIVSIDVRKEKHHIVIIVSDEGRG 392

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    +F RF  V  +      G GLGL+IV+  +  HGG +  +S     T +   
Sbjct: 393 IPKEDLPHIFERFYRVDKSRSRTSGGTGLGLAIVKEIVEAHGGAIYAASEYGKGTNMIIT 452

Query: 788 IP 789
           +P
Sbjct: 453 LP 454


>gi|221236136|ref|YP_002518573.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|220965309|gb|ACL96665.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 574

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+  +S+ELR+P+  ++G    L+ +KL   +++QS+Y+E I  S   L+ ++NDIL
Sbjct: 200 KSAFLAMMSHELRTPMNGVLGLAHALRGTKL---DAQQSEYLEMIEQSGHGLMTILNDIL 256

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVADRQR 686
           DL+ ++AG + L  +   L  L  + +   S + ++   ++ ++V S         D  R
Sbjct: 257 DLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESARLKGLDLILEV-SPSAPPWVSGDATR 315

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + QI   ++SNA+ F+  G  VI       G    SV + G  +  +    +F  F    
Sbjct: 316 VRQILMNLVSNALKFTESGRVVIRLGGEAGGVVTLSVTDTGVGMTAEQIGRLFTPFAQGD 375

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRI 788
               RR  G GLGLSI      L  G + I SS+ GV +T   R+
Sbjct: 376 ASIARRFGGTGLGLSICRQLAELMAGEI-IVSSEPGVGSTFTVRL 419


>gi|169334535|ref|ZP_02861728.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259252|gb|EDS73218.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM
           17244]
          Length = 872

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 10/259 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  + + TD V  + +L    E   KA+E K+ F+  +S+E+R+PL  IIG   L + + 
Sbjct: 334 LTVYSDETDQVLMQESLKNALEKAEKANEAKSDFLSRMSHEIRTPLNGIIGMVTLARENI 393

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                SK+   V  ISASS  LL L+NDILD++ +++G +++        + +       
Sbjct: 394 NNK--SKEIDCVNKISASSKHLLVLINDILDMSKIESGKVEIKNKKFGFRNFVESTVSLF 451

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
            ++  E  I+ K +  G + S+V  D     QI   +LSNA+ F+ KG  +     L   
Sbjct: 452 FSQAKEKGIKFKSVLIGNIPSYVKGDYLHTNQIIVNLLSNAVKFTDKGGEITNRISLLKE 511

Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            DN  +I F V + G  I +     +FN F            G GLGL I + F  + GG
Sbjct: 512 EDNKVWIRFEVSDTGVGIEKKNFDKIFNPFEQEDASVSYNYGGTGLGLPIAKRFTQMLGG 571

Query: 771 HVSISSSDEGVTTINCRIP 789
           ++S+ S     +T    +P
Sbjct: 572 NISLKSEVGKGSTFTVDLP 590


>gi|254285404|ref|ZP_04960369.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae AM-19226]
 gi|150424676|gb|EDN16612.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae AM-19226]
          Length = 1146

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIEVKSKFEQGTQIQVNLP 841


>gi|194334238|ref|YP_002016098.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312056|gb|ACF46451.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 737

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 139/276 (50%), Gaps = 15/276 (5%)

Query: 517 TLELLSDSVL-EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           T+E+L  SVL ++S     + + ++ F ++T+  ++ER + E    +R    +KN F+ +
Sbjct: 468 TIEVLVSSVLFDFS----KHKRLLVVFRDITEQKKSERLIKEN---IR----LKNDFIAN 516

Query: 576 VSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           VS+ELRSPL +I+GF+  LLK  K     +   +++  I   S  L +L+ D+L+++ +D
Sbjct: 517 VSHELRSPLFSILGFSSTLLKERKELDFET-TGEFLGIIHDESKRLSSLIEDVLNVSRID 575

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +G +      I    ++    +S+     E ++   +  + +     AD   L Q+   +
Sbjct: 576 SGKVAYKKKIIDPAPVVIGACESLKMMASEKSVEFSIHVEPETMQVNADPDALKQVVINL 635

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RG 753
             NA+ F+ +   V +  + D    + +VK++G  IPE     +F +F      G+   G
Sbjct: 636 AVNAIKFTPRDGCVRVSLSNDAHWMVLTVKDSGVGIPESDYDKIFEKFYRVERPGEEIEG 695

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL IV+  I  H G + ++S  +  +T   R+P
Sbjct: 696 TGLGLPIVKEIIAAHKGSIEVNSKKDFGSTFFVRLP 731


>gi|331000363|ref|ZP_08324044.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329572159|gb|EGG53824.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 894

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 156/334 (46%), Gaps = 29/334 (8%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSV-LEYS 529
             P     N     +R+Y+E   W      + +  ++R   K+    +EL   S   + S
Sbjct: 284 FDPDAITNNKEELLNRFYDEDRNW------LRNILNDRTIIKTATRNIELKGSSQNFQLS 337

Query: 530 IIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           + P+       T+++  + T+ +  ++ L +     + A + K+ F+ H+S+E+R+P+  
Sbjct: 338 VYPVRQGLIDWTVVSLFDETEQIAYQKNLADALTTAKNASQAKSDFLSHMSHEIRTPMNA 397

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG T  +  S++G    K    ++    +S  LL L+NDILD++ +++  + L+Y    
Sbjct: 398 IIGMT-TIALSRIGD-KQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYENFD 455

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L + ++ +   I  +  E  +  ++I+ D +    V D  R+ Q+F  +++NA+ F+ +G
Sbjct: 456 LQETVHCIYNLIEPQAKEKGVSFEIITNDIRQECLVGDPLRVNQVFINVIANAVKFTPRG 515

Query: 706 STVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNA-----HRGQRRGVG 755
             V ++ +  +           + +NG  + ++    VF  F         H G   G G
Sbjct: 516 GKVTMRLSEKHTSPEHIHLRCVISDNGIGMKKEFLSRVFLPFEQETAEIAQHFG---GTG 572

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I  + +NL GG + + S +   +T    +P
Sbjct: 573 LGLAITHNLVNLMGGSIDVQSEEGKGSTFTIDLP 606


>gi|327484261|gb|AEA78668.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae LMA3894-4]
          Length = 1176

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 614 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 673

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 674 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 729

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 730 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANLDALRFNQIVTNLLSNAIKFTDQGR-V 788

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 789 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 848

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 849 LMNGKIEVKSEFEQGTQIKVSLP 871


>gi|239625873|ref|ZP_04668904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520103|gb|EEQ59969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 840

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 125/252 (49%), Gaps = 13/252 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + + +E  L EK  A   A+  K+ F+  +S+E+R+PL  I+G  +L K S  G  + + 
Sbjct: 303 EKLSSELLLAEKERA-EAANRAKSDFLSQMSHEIRTPLNGIMGMAELGK-SHTGEPD-RM 359

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ I+ SST LL+L+NDILD++ +++G ++L+     L  LL  +      +     
Sbjct: 360 RNCLDKITLSSTHLLSLINDILDMSKIESGKIELHMERFDLGQLLRALTTVFHVQAVSRQ 419

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGD--FI 720
           I   +   G++  ++  D  RL QI + +LSNA+ F+     V L  +   RD       
Sbjct: 420 IDYHIFLYGEIEEYLTGDSLRLNQILTNLLSNALKFTPAQGQVSLNVSELRRDESGIWLR 479

Query: 721 FSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V++ G  I  +    VF  F    S   R Q  G GLGL I ++F+ + GG +++SS 
Sbjct: 480 FEVRDTGRGIAPENIDRVFEAFTQENSGIAR-QYGGTGLGLPITKNFVEMMGGSITVSSK 538

Query: 778 DEGVTTINCRIP 789
               +     IP
Sbjct: 539 VGAGSIFTVDIP 550


>gi|218896839|ref|YP_002445250.1| sensor protein VanS [Bacillus cereus G9842]
 gi|218542191|gb|ACK94585.1| sensor protein VanS [Bacillus cereus G9842]
          Length = 337

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 129/245 (52%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  +Y
Sbjct: 91  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEEY 149

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+   I +  L+ ++      ++ + N+  
Sbjct: 150 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEIDMKALIEQIMIDFVPQLDDANMSF 209

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + SD  L   V D   ++++F  ++ N++ +   G  + +  +    +    +KN G  
Sbjct: 210 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIGISNKTMNVEVEIKNFGKC 268

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S   LH G +++ S+D+  T  
Sbjct: 269 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIAQLHQGDITVRSNDKE-TVF 324

Query: 785 NCRIP 789
             ++P
Sbjct: 325 TVKLP 329


>gi|153828872|ref|ZP_01981539.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 623-39]
 gi|148875668|gb|EDL73803.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 623-39]
          Length = 1146

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIKVKSEFEQGTQIQVNLP 841


>gi|291451645|ref|ZP_06591035.1| two-component system sensor kinase [Streptomyces albus J1074]
 gi|291354594|gb|EFE81496.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 537

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 125/251 (49%), Gaps = 18/251 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---SKLGSLNSKQ 606
           R   AL ++ +A+   +E    FV  +S+ELR+PLT I   T++L+    ++ GS++   
Sbjct: 261 RTAAALEKQVDAMSDREEASRRFVADMSHELRTPLTAITAVTEVLEEELDAETGSVDPMI 320

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  +   +  L  LV +++++   DAG  +L   T+   D+ +++   I  +   + 
Sbjct: 321 EPAVRLVIGETRRLNTLVENLMEVTRFDAGTARLVLDTV---DIADQITACIDARAWLDA 377

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGD-F 719
           + +    D + G     D +RL  I + ++ NA+        V ++        + GD  
Sbjct: 378 VEL----DAERGIMAHVDPRRLDVILANLIGNALKHGGSPVRVSVRVEPPTVGEEAGDRL 433

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +  V+++G  IPE++   VF+RF  ++A R +  G GLGLSI     ++HGG +S ++S 
Sbjct: 434 VIRVRDHGPGIPEEVLPHVFDRFYKASASRPRSDGSGLGLSIAVENAHIHGGDISAANSP 493

Query: 779 EGVTTINCRIP 789
           EG      R+P
Sbjct: 494 EGGAVFTLRLP 504


>gi|255656614|ref|ZP_05402023.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 758

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 36/343 (10%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +S G+     +G I L N   + + K+E N+L  G +I  +         E +       
Sbjct: 95  ISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVI-------KEEEILKQILR 147

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEK 558
            I S D+E  ++        D V +  + P  L N   ++  + VN+ D       +T+K
Sbjct: 148 FIGSKDNETANITTK----DDIVYKIKVDPVYLQNTNNVIIGSIVNIED-------ITKK 196

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++ ++++E I + S 
Sbjct: 197 ----VKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR-NRFLEIIESESD 251

Query: 619 ILLNLVNDILDLATV---DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            L  L++DIL L+ V   D  +M+     +V+ D+  EV +       E NI +    D 
Sbjct: 252 RLKRLIDDILLLSFVENKDTLLME----NVVVYDVFKEVYEITQHSASEKNIEVLYKCDD 307

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +NG  IP++  
Sbjct: 308 KSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGIPKEDV 367

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +F RF  V  A      G GLGL+I +  +    G + + S
Sbjct: 368 ERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKS 410


>gi|187933765|ref|YP_001886045.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721918|gb|ACD23139.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 664

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 138/265 (52%), Gaps = 15/265 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT- 596
           TF+     +     L  +N+ L  A   + +K  F  ++S+E ++PL  I+    L+++ 
Sbjct: 371 TFIMTGKDITNYNKLALENKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESY 430

Query: 597 -SKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
             K   +  KQS  +YV  +  +S  LL LVN+++D+  +D G  K+N     + +++ E
Sbjct: 431 IKKFDDMLEKQSMSKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEE 490

Query: 654 VKQSIA--TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  S+A  TK  E NI     +D +      D +++ +I   ++SNA+ ++ K   + + 
Sbjct: 491 IVLSVAEYTKNKERNIIFD--TDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVN 548

Query: 712 AARD--NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
            + +  + +   SVK+NG  IP++  + +F RF  V N+      G G+GLS+V+S + +
Sbjct: 549 ISTNLHDNEVTISVKDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEM 608

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           H G + I+S ++  T I   +P K+
Sbjct: 609 HEGKIWINSEEDEGTEIIFTLPIKK 633


>gi|172057192|ref|YP_001813652.1| histidine kinase [Exiguobacterium sibiricum 255-15]
 gi|171989713|gb|ACB60635.1| histidine kinase [Exiguobacterium sibiricum 255-15]
          Length = 546

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D  ++ FV  VS+ELR+PL++I+GFT+LL    L     +Q +Y+E I + +  L  
Sbjct: 316 KELDLKQSEFVSIVSHELRTPLSSIMGFTELLMRRTLD--GPRQKKYLETIHSETVRLAE 373

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSF 680
           L++DIL++   +          + L  L+ E++    +A+  H    RI+V  +      
Sbjct: 374 LIDDILEIQKGEDLTQGTTKKRMDLKKLVFEMRPMFDLASSKH----RIRVAFEPGRYEL 429

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            A  +++ Q+F+ ++ NA+ +S  G  + +K    +     +V++ G  IPE     +F+
Sbjct: 430 TASEEKMKQLFTNLIMNAIKYSPDGGLIQIKGVVQDHLIRLTVEDEGIGIPEKSVPFIFD 489

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +F    +   R+  G GLGL+I +  +  H G +S+  S+EG+ +T     P
Sbjct: 490 KFYRADNSDTRKIGGTGLGLAICQMIVKDHDGTISV-QSEEGIGSTFTVEFP 540


>gi|116334616|ref|YP_796143.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116099963|gb|ABJ65112.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
          Length = 388

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 133/255 (52%), Gaps = 14/255 (5%)

Query: 545 VTDSVRA--ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V DSV A  +  +   +E  R  ++ K+  + +VS+++R+PLT+IIG+  L++  +  S 
Sbjct: 125 VVDSVNALVDSVIHSMDEE-RAIEKSKDELITNVSHDIRTPLTSIIGYLGLIEDKQYHS- 182

Query: 603 NSKQSQYVEYISAS---STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              Q+  ++Y   +   S  + +LV D+ +   V      L+ + I L  +L ++  S  
Sbjct: 183 ---QADLLKYTHTAFLKSKQMKSLVEDLFEYTKVRQTDTPLSLTNIDLAAMLEQLAASFE 239

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +  +  + I   S   +    AD ++L++IF+ +++NA+ +   G  + L A + N + 
Sbjct: 240 LEAQKKGMTIGASSTPSVLMMEADPEKLVRIFNNLVANALKYGDGGKQINLIAKQINDNE 299

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +   V N+G  IP++    +F RF  V  +   +  G GLGL+I +S + LHGG++ + S
Sbjct: 300 LEVRVTNDGPKIPKESLSMIFERFYRVEESRSKETGGTGLGLAIAQSIVALHGGYIYVES 359

Query: 777 SDEGVTTINCRIPSK 791
            D+ +T+    +P K
Sbjct: 360 DDD-LTSFVIHLPVK 373


>gi|21230299|ref|NP_636216.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769707|ref|YP_244469.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992922|ref|YP_001904932.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111848|gb|AAM40140.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575039|gb|AAY50449.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734682|emb|CAP52892.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris]
          Length = 636

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 5/235 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + RA  A   + EA   A+  K  F+   S+ELR+PL  I+G+  +L+   +        
Sbjct: 256 AARANEAQLARREA-ETANRAKTEFLSRSSHELRTPLNAILGYAQVLE---MDLPEPGHR 311

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +++++I  +   LL L+ ++LD+A ++A  + L+   I +   ++E    IA    ++ I
Sbjct: 312 RHLQHILGAGRHLLGLITELLDIARIEADQLDLSPEPIAVRAAVHEALGLIAPDADKHGI 371

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            ++  +     +  AD QRL Q+   +LSNA+ F+  G  V + A  D       V + G
Sbjct: 372 SLQPPAIDGPWTVRADAQRLRQVLLNLLSNAVKFNRTGGQVQVSAQPDGDQVRIVVADQG 431

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + +     + +F  F    A R    G GLGL++ +  I   GG + + SS +G 
Sbjct: 432 AGLTAAQIERLFTPFERLGAERSAVEGTGLGLALSKRLIEAMGGQIGVDSSRDGA 486


>gi|22095657|sp|O82436|ETR1_CUCMR RecName: Full=Ethylene receptor 1; AltName: Full=Cm-ETR1; AltName:
           Full=MEETR1
 gi|3641254|gb|AAC99645.1| putative ethylene receptor [Cucumis melo var. cantalupensis]
 gi|11611626|dbj|BAB18937.1| ethylene receptor [Cucumis melo var. cantalupensis]
 gi|145411509|gb|ABP68413.1| putative ethylene receptor [Cucumis melo]
 gi|162138862|dbj|BAF95188.1| ethylene receptor [Cucumis melo var. cantalupensis]
          Length = 740

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 35/264 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHAVFKEVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  F V D +RL+Q    ++ NA+ FS +GS  I         
Sbjct: 432 PVTLVKKLSLTLHLGPDLPVFAVGDEKRLMQAILNVVGNAVKFSKEGSISISAIVAKSET 491

Query: 710 --------LKAARDNGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
                         +  F     VK+ GS I P+D+ K +F +F +    G R   G GL
Sbjct: 492 FREIRVPDFHPVPSDSHFYLRVQVKDTGSGISPQDIPK-LFTKF-AQTTVGPRNSGGSGL 549

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ + S   G
Sbjct: 550 GLAICKRFVNLMEGHIWLESEGLG 573


>gi|237719620|ref|ZP_04550101.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229450889|gb|EEO56680.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1341

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L EK + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I 
Sbjct: 805  LREK-QYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIH 861

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D
Sbjct: 862  KNAGNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHAD 921

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +      DR ++ ++ + +LSNA  ++S G T+ ++ A    + +FSV +NG+ I E+ 
Sbjct: 922  CEQCLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEED 981

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F RF    + GQ  G G+GL++ +  +  H G +++ S
Sbjct: 982  YVKIFERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVES 1023


>gi|228958190|ref|ZP_04119920.1| hypothetical protein bthur0005_17010 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229043664|ref|ZP_04191370.1| hypothetical protein bcere0027_17110 [Bacillus cereus AH676]
 gi|228725651|gb|EEL76902.1| hypothetical protein bcere0027_17110 [Bacillus cereus AH676]
 gi|228801461|gb|EEM48348.1| hypothetical protein bthur0005_17010 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 261

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 131/245 (53%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 15  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 73

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L + ++D+L+   ++   ++L+   + +  L+ ++      ++ + N+  
Sbjct: 74  VSILKRKSYELKHQIDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 133

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + SD  L   V D   ++++F  ++ N++ +   G  + ++ +    +    +KN G  
Sbjct: 134 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIEISNKTMNVEVEIKNFGQC 192

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S  +LH G +++ S+D+  T  
Sbjct: 193 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIADLHQGDITVRSNDKE-TVF 248

Query: 785 NCRIP 789
             ++P
Sbjct: 249 TVKLP 253


>gi|29829895|ref|NP_824529.1| two-component system sensor kinase [Streptomyces avermitilis
           MA-4680]
 gi|29607004|dbj|BAC71064.1| putative two-component system sensor kinase [Streptomyces
           avermitilis MA-4680]
          Length = 521

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 14/245 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---SKLGSLNSKQ 606
           R   +L ++   +   DE    FV  +S+ELR+PLT I   T++L+    ++ GS++   
Sbjct: 264 RTAESLEKRVADMSARDEASRRFVADMSHELRTPLTAITAVTEVLEEELDAETGSVDPMI 323

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  + + +  L +LV +++++   DAG  +L    +   D+ +++   I  +   + 
Sbjct: 324 EPAVRLVVSETRRLNDLVENLMEVTRFDAGTARLVLDHV---DIADQITACIDARAWLDA 380

Query: 667 IRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    D + G+    D +RL  I + ++ NA+     GS V +    +  D +  V++
Sbjct: 381 VDL----DAERGNICRLDPRRLDVILANLIGNALKHG--GSPVRVSVRTEAEDLVIEVRD 434

Query: 726 NGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +G  IPED+   VF+RF  ++A R +  G GLGLSI     ++HGG ++ ++S +G    
Sbjct: 435 HGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALENAHIHGGEITAANSLKGGAVF 494

Query: 785 NCRIP 789
             R+P
Sbjct: 495 TLRLP 499


>gi|52144961|ref|YP_081868.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51978430|gb|AAU19980.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 340

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 106 KRSEESRKKLLSSISHDIRTPLTSIIGYIDALKDEVAASEIEKQ-EYLKILYMKSNNLKH 164

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++++        +A
Sbjct: 165 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPESTFPIMA 224

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+  L++I   ++ NA+ +   G TV ++    + ++   + + G  IP+   +++F R 
Sbjct: 225 DQLSLIRIIGNLMKNAIYYGKDGKTVGVELLETDTEYELLIWDKGPGIPKHDLQNIFERM 284

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +      G GLGLSI ++ +  +GGH+ + S+    TT    IP
Sbjct: 285 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESNPWERTTFGFSIP 333


>gi|311694504|gb|ADP97377.1| sensory box histidine kinase/response regulator [marine bacterium
           HP15]
          Length = 647

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 12/226 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A++ K+ F+  +S+ELR+PL  ++G  DL++   L     +Q +Y+     S+  
Sbjct: 263 EKAEMANQAKSEFLATMSHELRTPLNGVLGMVDLIQEEPL---TQRQREYLNTARQSTED 319

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN--IRIKVISDGKL 677
           LL ++ DILD + +D+G +KL      L +L++    +      +    + +K   D   
Sbjct: 320 LLTVIGDILDYSKMDSGTLKLESQEFNLRELISNCTATYRHLAEQQGLALNLKFFGDWPD 379

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI-FSVKNNGSSIPE 732
              V  D  RL QI + +  NA+ F+  G   I     A  DN   +  SV ++GS IP 
Sbjct: 380 NPVVIGDPARLRQILAGLADNAIKFTGDGFINIQAGFFALEDNCIILNCSVSDSGSGIPT 439

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +    +FN F  V   +     G GLGLS+V+  + L GGH+ + +
Sbjct: 440 ERLHDIFNSFEQVDGGNSRLYGGTGLGLSLVQRLVELMGGHIQVET 485


>gi|317151760|ref|YP_004119808.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942011|gb|ADU61062.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1180

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 123/245 (50%), Gaps = 17/245 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           ++T   RA+  L    E    A+  K+ F+  +S+E+R+P+  I+G TD+ L+T    SL
Sbjct: 644 DITAQRRAQDDLMRAREDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTDITLQT----SL 699

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            ++Q  Y++ +  S+  LL ++NDILDL+ ++A  + L+     L   +    + +  + 
Sbjct: 700 TTEQRDYLKTVMDSAQHLLGIINDILDLSKIEARKLCLDRVDFDLPSHVRTTLKGLEMQA 759

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNG 717
            +  +   +  D  + + V  D   L Q+   ++ NA+ F+ KGS  +L    +A  D  
Sbjct: 760 RQKGLDFVLELDQDVPACVKGDPLSLRQVLMNLVGNAIKFTHKGSIRVLVSPAQAQPDAD 819

Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           D       F V + G  IPE    ++F  F S   R    G GLGL+I +  I L GG +
Sbjct: 820 DQRTVGVRFEVADTGIGIPESFMGTIFQSF-SQTTRA-FGGTGLGLAICKQLIGLMGGDI 877

Query: 773 SISSS 777
           S++S+
Sbjct: 878 SVTST 882


>gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1548

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 156/353 (44%), Gaps = 19/353 (5%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            + + V   +GRI L NP    L   E   L+ G  +        R  +     D  A+ 
Sbjct: 620 PDAMVVVDGEGRIVLCNPQLERLLGYEMGELT-GHLVEQFLPEEVRERHVKLRNDFLASP 678

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEK 558
           +     ER+ + G  +  +   LE S+  LP +            +++   R+E  L   
Sbjct: 679 LQVIGHEREVI-GVRKDGTRLPLEISLSKLPPSDRHPMSACGALRDISLRKRSEAELRRA 737

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASS 617
            E   +A  +K+ F+ ++S+E+R+P+  IIG   L LKT     L+ +Q+ YV  I AS 
Sbjct: 738 KEMAEEATRLKSDFLANMSHEIRTPMNAIIGMAHLALKTE----LDPRQADYVRKIRASG 793

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL ++NDILD + ++AG + +  +   L  +L+ V   ++ K     +   +     +
Sbjct: 794 QHLLGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVSEKAATKGLEFVLDVAANV 853

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPE 732
              +  D  RL QI     +NA+ F+  G  VI     + GD      F+V++ G  + +
Sbjct: 854 PPVLRGDPLRLGQILINYANNAVKFTEHGEIVIHVETLETGDTDVLLRFAVRDTGIGLTD 913

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +    +F  F        R+  G GLGL+I +   +L GG V + S   G +T
Sbjct: 914 EQKARLFVSFQQADTSTTRKYGGTGLGLAIAKKLADLMGGGVGVDSVPGGGST 966


>gi|46908672|ref|YP_015061.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092786|ref|ZP_00230571.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|226225048|ref|YP_002759155.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254825378|ref|ZP_05230379.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|254932259|ref|ZP_05265618.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|46881944|gb|AAT05238.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018874|gb|EAL09622.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|225877510|emb|CAS06224.1| two-component sensor histidine kinase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583816|gb|EFF95848.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|293594621|gb|EFG02382.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|328465108|gb|EGF36376.1| two-component sensor histidine kinase [Listeria monocytogenes 1816]
 gi|332312930|gb|EGJ26025.1| Histidine kinase [Listeria monocytogenes str. Scott A]
          Length = 591

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +R  + +++ FV +VS+EL++P+T + GF + LL  +    +  K+  ++  I   S  L
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKK--FLTIIKEESDRL 416

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ DIL L+ ++   +  N   + +++++ +  ++I     E NIR+ +         
Sbjct: 417 HRLIMDILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVM 476

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      VF
Sbjct: 477 IETDRDKLQQIVINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDIDRVF 536

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 537 ERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|332532401|ref|ZP_08408279.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038044|gb|EGI74491.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 936

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 127/245 (51%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T V++ + + +E+ L E         E K+ F+ ++S+E+R+PL  +IG  D+L  +   
Sbjct: 384 TLVDIQERIESEQILLEAKHQAETLAESKSRFMANISHEIRTPLNAVIGSADILHHT--- 440

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L S+Q +Y + I  SS  LL++++D+L  +  +A  + L+     ++  + E    I  
Sbjct: 441 GLTSEQMRYTQMIKTSSDALLSVLDDVLTYSRFEAQAITLDNQPFSIDTCIEEAIDIITQ 500

Query: 661 KMHENNIRIKVISD---GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
              +   R++VI D         + D  R+ QI   +L+NA+ F+  G  TV ++     
Sbjct: 501 SALQK--RLEVIFDFYPDVPAQVIGDHARVRQIVINLLANAIKFTQHGVITVTVRCTHIK 558

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           G+ +    SVK+ G  I ++  +S+F  F+ + +   R+  G GLGL+I +   ++ GG 
Sbjct: 559 GNNLNLHLSVKDTGMGIAKNKIESMFMPFIQSDNSITRKHGGSGLGLAICKQICDVVGGD 618

Query: 772 VSISS 776
           +S+SS
Sbjct: 619 ISVSS 623


>gi|326391194|ref|ZP_08212738.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992763|gb|EGD51211.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 568

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 134/270 (49%), Gaps = 14/270 (5%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + VL  +I PL + Q +  +V V   +  +  L    +A+RK       FV +VS+ELR
Sbjct: 309 GNKVLTVNIAPLKSNQQIEGYVYVLHDITEQHKL----DAMRK------EFVANVSHELR 358

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I  + + L  S + +   K+  +++ I + +  +  LV D+L L+ +D+    L 
Sbjct: 359 TPLATIKSYVETLLYSDVDAEYLKR--FLKIIDSETDRMTRLVKDLLLLSKMDSEEKNLK 416

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +    LN+++ +V   ++ + H+ N ++ V           D+ ++ Q+   +++NA+ +
Sbjct: 417 FEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQEVPRHVYIDKDKMEQVIVNLVTNAIKY 476

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           + +   + +    D     F V++NG  IP++    +F RF  V  A   +  G GLGLS
Sbjct: 477 TPENGMIKVMTEYDENFATFIVEDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLS 536

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IV+  + LH G V+I S     T +  ++P
Sbjct: 537 IVKQIVELHKGEVNIESEVGKGTIVRVKLP 566


>gi|229132744|ref|ZP_04261590.1| hypothetical protein bcere0014_16740 [Bacillus cereus BDRD-ST196]
 gi|229166774|ref|ZP_04294524.1| hypothetical protein bcere0007_17440 [Bacillus cereus AH621]
 gi|228616771|gb|EEK73846.1| hypothetical protein bcere0007_17440 [Bacillus cereus AH621]
 gi|228650754|gb|EEL06743.1| hypothetical protein bcere0014_16740 [Bacillus cereus BDRD-ST196]
          Length = 288

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 130/242 (53%), Gaps = 13/242 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  ++L S   +  QY
Sbjct: 45  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNQLHSNREECEQY 103

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+ +L+   ++   ++L+ S I +   + ++      ++ + ++  
Sbjct: 104 VSILKRKSYELKNQVDGLLEYCQINYREIELHKSVINMKAFIEQIMIDFLPQLDDADMSF 163

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D K+     D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 164 CIKGD-KVLHVEMDVAVMVRLFENVISNSIMYGKDGKELLIQVSKRDMNVEIEIKNFGQC 222

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           IP +    VF +F    +RG++       G G+GL+I  S   LH G +++ S+D E V 
Sbjct: 223 IPNENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNDKETVF 278

Query: 783 TI 784
           TI
Sbjct: 279 TI 280


>gi|218134761|ref|ZP_03463565.1| hypothetical protein BACPEC_02664 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990146|gb|EEC56157.1| hypothetical protein BACPEC_02664 [Bacteroides pectinophilus ATCC
           43243]
          Length = 501

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 129/229 (56%), Gaps = 10/229 (4%)

Query: 552 ERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           E+   +K EA  L ++++++ + ++ +S++LR+PLT I G    L ++  G    +Q++Y
Sbjct: 256 EKNQRDKEEAAILAESEQLRANLLRSISHDLRTPLTTIAGNASSLLSN--GKSFDEQTRY 313

Query: 610 VEY--ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y  I   S  L NLV ++L    ++ G M LN ST +L D++++  + +  K H    
Sbjct: 314 QIYQDIYNDSVWLNNLVENLLYATRIEEGRMVLNTSTELLADVIDDAVRHV--KQHSGEH 371

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            I V SD +     AD + ++Q+   I+ NA+ ++  GS + +++  +N   +  +++NG
Sbjct: 372 SIFVESDDEYILVTADARLIVQVIINIVDNAVRYTPPGSHITIRSCSENNMAVVYIEDNG 431

Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
           + I ++  + VF++F S  +R    RR +GLGL + ++ I  HGG +++
Sbjct: 432 NGISDEDKEHVFDKFYSGTNRIADNRRSIGLGLYLCKAIIEAHGGTITV 480


>gi|163814592|ref|ZP_02205981.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
 gi|158450227|gb|EDP27222.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
          Length = 528

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 119/230 (51%), Gaps = 5/230 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R + E  + L +++E + SF+ ++S++ RSPLT+I G+ + +    +     +  +Y+  
Sbjct: 250 RYMEEMADELSRSNEYRKSFISNISHDFRSPLTSIKGYIEAMLDGTIPL--ERHEKYLGI 307

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L  L   +L+L   D+  ++L+ S   + D++     +   +  +  I ++ +
Sbjct: 308 VLNEAQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTVNTFEKRCQDRGIFLESV 367

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                    ADR ++ Q+   ++ NA+ F+ +G  + ++    +     SVK+ G  IP+
Sbjct: 368 FLTDNTIVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVTEKDNKIFISVKDEGIGIPK 427

Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           D  K VF RF  ++  RG+ + G GLGL+I +  I  HG  +++ +S+EG
Sbjct: 428 DAQKKVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITL-TSEEG 476


>gi|229508236|ref|ZP_04397741.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae BX 330286]
 gi|229511525|ref|ZP_04401004.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|229518664|ref|ZP_04408107.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC9]
 gi|229607810|ref|YP_002878458.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MJ-1236]
 gi|254848772|ref|ZP_05238122.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MO10]
 gi|255744919|ref|ZP_05418869.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholera CIRS 101]
 gi|229343353|gb|EEO08328.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC9]
 gi|229351490|gb|EEO16431.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|229355741|gb|EEO20662.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae BX 330286]
 gi|229370465|gb|ACQ60888.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MJ-1236]
 gi|254844477|gb|EET22891.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MO10]
 gi|255737390|gb|EET92785.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholera CIRS 101]
          Length = 1176

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 614 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 673

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 674 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 729

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 730 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 788

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 789 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 848

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 849 LMNGKIEVKSEFEQGTQIQVNLP 871


>gi|300869527|ref|ZP_07114109.1| GAF sensor hybrid histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332500|emb|CBN59307.1| GAF sensor hybrid histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 816

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 38/241 (15%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS------LNSKQSQYVEYISASSTILLN 622
           K+ F+  +S+ELR+PLT +IG +  L     G+        SKQ  Y++ I  S   LL+
Sbjct: 416 KSEFLATMSHELRTPLTCVIGISATLLRWCCGNEANTKIPPSKQKNYLQTIHDSGKKLLD 475

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLN--------DLLNEVKQSIATKMHENNIRIKVISD 674
           L+ DILDL+ V+AG   L  S   L+        DL  +          E  I      +
Sbjct: 476 LIEDILDLSQVEAGNTALKISEFSLSQVAYLTVADLKEQAAAKHIAIAIEQQI------E 529

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------------RDNGDF 719
                FV D++R+ QI   +L+NA+ F+ KG  V L+ +               +  G+ 
Sbjct: 530 PGHERFVGDQRRIKQILFNLLTNAIKFTPKGGRVTLRVSVKGEKSIAELRQNSIKSGGNI 589

Query: 720 -IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F V++ G  I ++    +F +F  + + +R +  G+GLGL++ +  + LHGG + + S
Sbjct: 590 AVFQVEDTGIGIAKEQQSLLFQKFKQLDSPYRREYSGIGLGLALTKHLVELHGGAIEVKS 649

Query: 777 S 777
           +
Sbjct: 650 T 650


>gi|254248418|ref|ZP_04941738.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
 gi|124874919|gb|EAY64909.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
          Length = 685

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 162/366 (44%), Gaps = 37/366 (10%)

Query: 448 AVFGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           A+ G D   RI   NPA  S++  +  + S    +  IA    R +          A+  
Sbjct: 172 AIVGTDAARRITSWNPAAASIFGIDTAQASGRDIVTMIAPRWLRRH----------AVPA 221

Query: 506 SFDDERKSLQGTLELL------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           SF D R  + G L++L            ++  P+ +AQ     +++T     ER   E++
Sbjct: 222 SFADLRAPV-GPLDVLCVRSNGGRFRATFAASPIVDAQGHCAGLSLTLREAGERRRNERH 280

Query: 560 --EALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              +LR A          + +K+  +  VS+ELR+PL  I G+ ++L+ +          
Sbjct: 281 HLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRNADGQGF---AQ 337

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q V+ I  S+  L ++V D+LD +++  G ++L    + L  ++ +  + +      N +
Sbjct: 338 QAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQANGL 397

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +            AD +RL Q+ S +LSNA+ F+  G  + +   R       SV + G
Sbjct: 398 VLSTEYAMPACVIPADGERLRQVLSNLLSNAIKFTPPGGRINVSLTRAGERVRLSVSDTG 457

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTI 784
             I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V  +S+  G   T+
Sbjct: 458 QGIAPEYLPHLFDTFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAGRGMTV 517

Query: 785 NCRIPS 790
              +P+
Sbjct: 518 TVTLPA 523


>gi|59713420|ref|YP_206195.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
 gi|12620414|gb|AAG60694.1|AF319618_1 RscS [Aliivibrio fischeri]
 gi|59481668|gb|AAW87307.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
          Length = 927

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 140/274 (51%), Gaps = 33/274 (12%)

Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKAD---EIKNSFV 573
           ++ SI P+  PN        N+   +  ER +T+K E       A  KAD     K++F+
Sbjct: 355 IDVSITPILEPNG-------NIMHYIAVERDITKKKELEDKLIKAANKADVSNRAKSTFL 407

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PL  I+G   +++++     + +Q + ++ +  S   LL L+N+ILD + +
Sbjct: 408 ATMSHELRTPLNGILGMAQIIESN---IKDKEQHKQIKMLLESGDHLLFLLNEILDFSKI 464

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADRQRLLQI 690
           +   ++LN+++    D++  +  +  +     N  +K I D K+ +   F+ D+ R+ QI
Sbjct: 465 EQNKLELNHASFYFVDIIEPITNTYLSVCE--NKGLKFIIDNKINNEIVFIGDKPRIRQI 522

Query: 691 FSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              ++SNA+ F+ +GS  +        +        +K+ G  I E+  K +F  ++   
Sbjct: 523 IFNLISNAVKFTHEGSITLNFSHTLTGKGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAE 582

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
               R+  G GLGL+IV+   ++  G++S+SSS+
Sbjct: 583 ASTTRQYGGTGLGLAIVKQLTDIMRGYISVSSSE 616


>gi|224538850|ref|ZP_03679389.1| hypothetical protein BACCELL_03746 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519525|gb|EEF88630.1| hypothetical protein BACCELL_03746 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 473

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 135/257 (52%), Gaps = 27/257 (10%)

Query: 540 LTFVNVTDSVRAERA-----------LTEKNEALRKAD------EIKNSFVQHVSYELRS 582
           L +VN T+++ AE A             +K E L +A       E+K SF+ ++S+E+R+
Sbjct: 199 LRYVNPTEAM-AETASIIGLITNVQHFKDKEEELMRAKDLAIEAELKQSFLANMSHEIRT 257

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF++LL  S+    + +++ ++  I+ +  +LL L+NDIL+L+ +++G M  +Y
Sbjct: 258 PLNAIVGFSNLL-VSEDDLPDEEKADFINTINTNCELLLKLINDILELSRIESGNMTFSY 316

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
           ST  LN+ ++ +  + +  + +    IK + D     F+  D  RL QI +  L+NA  F
Sbjct: 317 STCNLNNWVDSMYLTHSLLIPKEIEFIKEVPDAAF--FINTDVNRLSQIMTNFLNNATKF 374

Query: 702 SSKGSTVILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           +  G  + L    D   +  S  V++ G  IP++  + +F RF       Q  G GLGLS
Sbjct: 375 TKSG-YIKLGYEIDFSTYEVSIYVEDTGKGIPKEEQRMIFERFYKQDEFVQ--GTGLGLS 431

Query: 760 IVESFINLHGGHVSISS 776
           I        GG +S++S
Sbjct: 432 ISMVIAEKLGGKISVAS 448


>gi|237808385|ref|YP_002892825.1| histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500646|gb|ACQ93239.1| histidine kinase [Tolumonas auensis DSM 9187]
          Length = 1131

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  R L +  ++   A+  K+ ++  +S+ELR+PL  ++G+  LL   +   L+ +  +Y
Sbjct: 657 KTSRKLEQAKKSAETANNAKSRYLAGLSHELRTPLNVLLGYAQLLSDDR--KLDHQTREY 714

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              +  +   L +L+  +L+++ ++AG ++L      L  +LNE+ +  A +  +  +  
Sbjct: 715 AHILRRNGKHLSDLLEGLLEISKIEAGRLELQRVEFNLATMLNELAEMFAMEASQKGLEF 774

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + +    L  ++A D+QRL QI   +L+NA+ ++ +G  VI +    N    FSV++ G 
Sbjct: 775 EYLPCVNLPVYIATDKQRLRQILINLLNNAIKYTREGK-VIFRVTYRNQVARFSVQDTGI 833

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            + E   + +FN F        R  +G GLGL+I  +  NL GG +S  S  +
Sbjct: 834 GLSEHDIQQIFNPFERIQTHNTRAIQGTGLGLTISHALANLMGGDISCQSQPD 886


>gi|218289583|ref|ZP_03493803.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240233|gb|EED07416.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 590

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 166/378 (43%), Gaps = 41/378 (10%)

Query: 429 YNTLVKVQGETIDHLS--------------EGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +N L +   ETI+ LS              +GV     DGR+ L+NP  +          
Sbjct: 223 FNALARQLAETIEQLSMEREGLQRILTSLQDGVVATDLDGRVVLANPPAKR--------- 273

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+R+++       +E    D   ++     +++ ++    +      +  +++PL 
Sbjct: 274 ----HLRHLSVAERGIVDEERLPDRLMSLWVRVREQQDAVYRE-DTWDGRTIGITMLPLY 328

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A        +  ++   R +TE+    R+ D ++  F+ +VS+ELR+PL+ + G+T+ L
Sbjct: 329 EADG----TTLRGALCVLRDITEE----RRLDRLRKDFIANVSHELRTPLSMLQGYTEAL 380

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +      + +  E I   +  +  LVND+L+LA +++G  KL+++ + L  ++  V
Sbjct: 381 -LDDISDDPDMRRELTEIIHDETLRMKRLVNDLLNLAQLESGQFKLHFARVDLTQVMRRV 439

Query: 655 KQSI-ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +   A    E+++  +V           D  RL Q+F+ +L NA   ++ G+       
Sbjct: 440 ARKFQALASDEDHLSFEVSIPDHPVMVDGDEDRLEQVFTNLLDNAFRHTATGTIRFELDI 499

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           R +  ++  V + GS IPE+    +F RF     A    R G GLGL+I    +  H G 
Sbjct: 500 RHDYAYV-RVADTGSGIPEEDVPYIFERFYKADKARTRSRSGTGLGLAIARQLVIEHRGE 558

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     TT    +P
Sbjct: 559 ILVESRLGEGTTFTVVLP 576


>gi|83955097|ref|ZP_00963753.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840426|gb|EAP79599.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 1088

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 6/230 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K  F+  VS+ELR+PLT+I G   L+ +   G L  K    +   ++S   L+ L+
Sbjct: 620 AEKAKTEFLSTVSHELRTPLTSIKGALGLVLSGATGQLPDKMKGLITIAASSCDRLILLI 679

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKVISDGKLGSFV 681
           N ILD+  ++ G +     T+ L++ LN      Q  A +   +  R+    D  + ++ 
Sbjct: 680 NSILDMEKIETGTLDFRMKTLNLSETLNTALVPNQLYAERAGVSLRRVDTPDDDVMLTY- 738

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +RL+Q+   +LSNA+ FS  G  +++           S+++ G+ I      SVF +
Sbjct: 739 GDSKRLVQVLDNLLSNAVKFSEHGGEILIALHAVGDQLRISIRDFGTGIQAAAQASVFEK 798

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        R   G GLGL+I +  I+ H G ++  S ++  T I   +P
Sbjct: 799 FTQGDSSDSRSKGGTGLGLTIAKVIIDHHQGQITFFSREDVGTEIIISLP 848


>gi|330952072|gb|EGH52332.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 595

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 157/353 (44%), Gaps = 23/353 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +D + +G+ +    G ++  NP  +     +E+RL      +++    SR   E D  +
Sbjct: 263 VLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLG-----QSLGEALSR--PELD--E 313

Query: 499 LFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556
               ++     ER      +E+  +S +L YS+ P+ + +  +L  V V   V  +RA  
Sbjct: 314 QLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF- 372

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                    + +++ FV   S+ELR+P+T +     LL+     +  S+++  +  ++  
Sbjct: 373 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTEE 423

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +     
Sbjct: 424 MQRLMQLINDLLNFSRYQNGLQKLKLAPCSVETLLQEAKARFEDQAQEQDIVLMLDMQEP 483

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I      
Sbjct: 484 MPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIAYGQQG 543

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  FV    +  + G GLGL++ +  + LHGG + + S     T     +P
Sbjct: 544 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|262190504|ref|ZP_06048750.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae CT 5369-93]
 gi|262033616|gb|EEY52108.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae CT 5369-93]
          Length = 1176

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 614 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 673

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 674 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 729

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 730 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 788

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 789 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 848

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 849 LMNGKIEVKSEFEQGTQIQVNLP 871


>gi|262161796|ref|ZP_06030814.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae INDRE 91/1]
 gi|262028528|gb|EEY47183.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae INDRE 91/1]
          Length = 1176

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 614 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 673

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 674 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 729

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 730 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 788

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 789 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 848

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 849 LMNGKIEVKSEFEQGTQIQVNLP 871


>gi|238025557|ref|YP_002909789.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia glumae BGR1]
 gi|237880222|gb|ACR32554.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia glumae BGR1]
          Length = 609

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 13/235 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LTE+    R+ D +K+ F+  VS+ELR+PLT++ G  DLL     G+L +   + V+ 
Sbjct: 245 RDLTEQ----RRLDRLKDDFLSTVSHELRTPLTSVKGAVDLLAGGAAGALPAPAQKLVDI 300

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS---IATKMHENNIRI 669
              +   L  L++D+LD+A ++A  M L      L+ L++E   +    A ++  +  R+
Sbjct: 301 ARRNGERLGRLIDDVLDVAKLEADRMTLQRRACGLDGLVDEALAANLDYARRVGVHLTRV 360

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               D ++     D  R LQ+ + +LSNA+  S  GS V ++  RD      +V+++G  
Sbjct: 361 GARFDCEV---WVDPDRFLQVMANLLSNAIKNSPAGSAVEVRGTRDGARARIAVRDHGGG 417

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI-NLHGGHVSISSSDEGV 781
           IPE     +F +F     R +R   G GLGL I +  +  +HG    +S+   G 
Sbjct: 418 IPEAFRARIFEKFSQADERDRRVGTGTGLGLHITQVLVERMHGAVGVVSTPGHGA 472


>gi|21673490|ref|NP_661555.1| sensor histidine kinase [Chlorobium tepidum TLS]
 gi|21646596|gb|AAM71897.1| sensor histidine kinase [Chlorobium tepidum TLS]
          Length = 399

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 155/363 (42%), Gaps = 38/363 (10%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--PGTHIRNIAAT--CSRYYNE 493
           E +  + E + V    G I L+NPA   L+  E  R    P T+I + A      R    
Sbjct: 60  EVLSSIREAIIVTNASGEIVLANPAASRLFMIEAARKRSIPVTNIEDAAMRELFERVQKR 119

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFVNVTDSVRA 551
             G          +++E  ++           L+ + +P+     +   T + + D  R 
Sbjct: 120 QSGI---------YNEELTAMTSK----GKRTLKVTAVPVMRRGALFDGTVLVINDVTR- 165

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQY 609
                     LR  +  +  FV  VS+ELR+PL +I G+T+ L     G++N  +  + +
Sbjct: 166 ----------LRNLERTRRDFVSSVSHELRTPLASIKGYTETLLE---GAMNDPENATAF 212

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  L  LVND+LDL+ +++G +  ++  + +   L +             +RI
Sbjct: 213 LNIIHQEAEQLTALVNDVLDLSRIESGKIAYSFEPVDVKPQLEKTAALFEPAAARKGVRI 272

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
           ++ +   L + +ADR     +   ++ NA+ +    S  +  +A   GD +   V +NG 
Sbjct: 273 ELNAPEGLPAVLADRSYFDIVVRNLIDNAIKYVDAESGRVRVSAYATGDSVSIEVADNGI 332

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP+     +F RF  V  A   +  G GLGLSIV+  +  H G V + S     TT   
Sbjct: 333 GIPQADLDRIFERFYRVDKARSRELGGTGLGLSIVKHIVLAHKGKVEVRSRINRGTTFTV 392

Query: 787 RIP 789
            +P
Sbjct: 393 TLP 395


>gi|58582493|ref|YP_201509.1| RpfC [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624381|ref|YP_451753.1| rpfC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58427087|gb|AAW76124.1| RpfC protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368321|dbj|BAE69479.1| rpfC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 725

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 17/232 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+ +Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDVEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IK 670
           I AS+  LL+LV ++LD++ ++AG ++++     L DL+  V   +  +     +    +
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLRDLIGSVNMILQPQAKTRGLDYGTE 289

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724
           V +D        D   L Q+   +L NA+ F+  G  V+L+ AR  G+        F V+
Sbjct: 290 VATDVP-DLLKGDTGHLRQVLLNLLGNAVKFTDHGH-VLLRVARLAGNGADTVRLRFDVE 347

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           ++G  +P DM   +F  F   A  G  R   G GLG +I +  I   GG + 
Sbjct: 348 DSGIGVPMDMRPRMFEAF-EQADMGLSRRYEGTGLGTTIAKGLIEAMGGAIG 398


>gi|292491952|ref|YP_003527391.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580547|gb|ADE15004.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 1362

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 14/251 (5%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+    E AL E  E   +A   K+ F+   S++LR PL  +    D L T KL    
Sbjct: 970  DITEEKEIETALREAKEKAVQASIHKSQFLATASHDLRQPLQTLSFLNDSL-TEKL---- 1024

Query: 604  SKQSQYVEYISASSTILLN---LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             K  +    I     +L N   L+N +LD+  ++AG++K  ++   +  LLN ++     
Sbjct: 1025 -KDPEIRRLIDQQGALLRNMGDLLNTLLDINKLEAGMVKPQFTVFPVASLLNYLRNEFEL 1083

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
               E  + ++++    +    +DR  L QI   +LSNA+  + +G  ++L   R + +  
Sbjct: 1084 HAREKGLNLRMVPCSVM--ICSDRILLEQILENLLSNAIKHTDRGK-ILLGCRRRSPNLR 1140

Query: 721  FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              V + G  IP++  K +F  F    N  R QRRG+GLGLSIVE   +L    + I S+ 
Sbjct: 1141 IEVWDTGIGIPQEQLKVIFQEFYQADNPARDQRRGLGLGLSIVERLAHLLDHSLDIRSTP 1200

Query: 779  EGVTTINCRIP 789
               +     +P
Sbjct: 1201 GKGSMFAIEVP 1211


>gi|255693529|ref|ZP_05417204.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620730|gb|EEX43601.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 480

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 123/217 (56%), Gaps = 3/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ S++GSLN +Q +  + I  +S  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPISAILMSLQLLEDSRVGSLNDEQQELAQSIQDNSDRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++ +++L++  V++G ++L        +L+    ++   +  + NI+++V   + K+G  
Sbjct: 311 SITSELLNMTQVESGKLQLKPRVTKPIELIEYAIKANRVQAEKFNIQVEVQYPEEKMGKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + ++SNA+ +S++   +I+ A +   ++I   V++ G  I     +S+F
Sbjct: 371 FVDSEKIAWVLTNLVSNAIRYSAENGRIIIGARKTKDNWIEMFVRDFGKGIDPRYHQSIF 430

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +       + +G GLGLSI + F+  HGG +++ S
Sbjct: 431 EHYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 466


>gi|34497051|ref|NP_901266.1| two-component regulatory protein sensor kinase [Chromobacterium
           violaceum ATCC 12472]
 gi|34102908|gb|AAQ59272.1| two-component regulatory protein sensor kinase [Chromobacterium
           violaceum ATCC 12472]
          Length = 895

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  VS++LR+PLT ++G  ++L    L     +QS+  + I   +  +  L
Sbjct: 663 ESERLRNSVLSVVSHDLRTPLTTMLGLANMLNAPTLPP--GRQSEIAQSIQDEAIRMTKL 720

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + +G+ KLN    +L++++    ++    +  + + +K+  D  L     D
Sbjct: 721 VTNLLDMAKLQSGV-KLNKEWQLLDEVVGSAVRACEHSLRHHKLELKLSRD--LPVLEYD 777

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
              + ++   +L NA  ++  GS + L AAR +GD +  +V ++G  +P  M    F++F
Sbjct: 778 AVLIERVLVNLLENAGKYTPAGSRIEL-AARHDGDKVRITVTDDGPGLPASMEHRAFDKF 836

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              A      GVGLGL+I  + I  HGG +   ++       +  +P+
Sbjct: 837 TRGAPESTTPGVGLGLAICRAIIENHGGTIEAGNAQPHGARFSFTLPA 884


>gi|23011796|ref|ZP_00052052.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 770

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 287 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 344

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++   + I L D L ++   +  +     +  +    
Sbjct: 345 RSAQHLSGLIDGLLDISRMEAGRLQTYRNEIRLADFLAQIVDMVRLQAEAAGLSFRFTRP 404

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+++G  V L+ +  +   +FS+++ G  IPE 
Sbjct: 405 DTLPAVVATDEKRLRQILLNLLSNAIKFTAEGE-VALEMSYRSQVAVFSIRDTGLGIPEA 463

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               +F  F   +    R   G GLGL+I      + GG +++ S
Sbjct: 464 DLARIFEPFERGSMPAARAAPGTGLGLTIAHLLAQVMGGEITVES 508


>gi|323357645|ref|YP_004224041.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
 gi|323274016|dbj|BAJ74161.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
          Length = 543

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  A E++  F++ VS+ELR+PLT++ GF  L+  + +G  + K   YV+ ++  +  LL
Sbjct: 313 LADAIEVREQFLRTVSHELRTPLTSVTGFLSLIDDA-VGPHDPKLRSYVDVVNRRAADLL 371

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           + + D++    V+     L    + +  +++   + + +K+ E       +    +    
Sbjct: 372 DRIEDLVSATRVEGA---LRLCVVDIRQIVDAAARRV-SKLAEQQSTPVHVRGASVARAH 427

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVF 739
           ADR++L    +++L+NA+ F    + + +    D GD     SV N+G  +     + VF
Sbjct: 428 ADREKLENAIAELLTNALKFGEPEAPITVTC--DAGDERVRVSVANDGPGLSHAELRRVF 485

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +RF   AH   R  +G GLGL+ V + ++ H G + I S+    TT+   +P+
Sbjct: 486 DRFYRTAHARSRAVQGFGLGLTRVRTIVHAHEGRIHIESAPGARTTVTVDLPA 538


>gi|317486729|ref|ZP_07945546.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316922112|gb|EFV43381.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 887

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 133/262 (50%), Gaps = 10/262 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +Q ++   + T      +AL++  E  R A+  K++F+ H+S+E+R+P+  IIG T ++ 
Sbjct: 335 SQRIIVLFDQTKEFAYRQALSDALENARNANTAKSNFLSHMSHEIRTPMNAIIGMT-VIA 393

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++L    S+    +  I+ SS  LL L+ND+LD++ ++ G + + +        L  V 
Sbjct: 394 LTRLDD-RSRMEDCLTKIALSSRHLLGLINDVLDMSKIEGGKLTIAHEPFNFKISLQGVI 452

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             I  +  E  +  +V +S       + D  RL QI   ILSNA+ F+  G ++ L+  +
Sbjct: 453 NLIQPQALERGLDFEVSLSGVDEEELLGDALRLNQILINILSNALKFTPVGGSIRLEVHQ 512

Query: 715 -----DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
                +N  F F +++ G  + ++  K ++  F   +++   +  G GLG++I ++ ++L
Sbjct: 513 LHKKNNNVQFRFVIRDTGIGMSQEFIKRLYTPFEQATSSTASKFGGTGLGMAITKNLVSL 572

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG + + S +   T     +P
Sbjct: 573 LGGTIFVKSEEGRGTEFTVELP 594


>gi|312875729|ref|ZP_07735724.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LEAF 2053A-b]
 gi|311088721|gb|EFQ47170.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LEAF 2053A-b]
          Length = 393

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 136/255 (53%), Gaps = 14/255 (5%)

Query: 544 NVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +V DS+ A       A++E+    +  DE+    + ++S++LR+PLT+IIG+  LLK  +
Sbjct: 133 DVVDSINALVDSTCMAISEEKAVEKSKDEL----IANLSHDLRTPLTSIIGYMSLLKMHQ 188

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQS 657
              L +++ +Y+  +   S  + ++ ND+ + AT++ +   KL    I ++ L+ ++   
Sbjct: 189 NSMLPAQRQEYLNIVFDKSLQMKSMTNDLFEYATLNFSHDKKLELEQIKISSLIEQIAAG 248

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A +  +  I IK   + +      D ++++++F+ ++SNA+ +      + +   + + 
Sbjct: 249 FALEAEKKQIDIKTSCEPQDLEIAVDVKKIVRMFNNLISNAVKYGVGAKNIYVSVKKISN 308

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D +   V N+G +IP+D    +F+RF  V  +   +  G GLGL+I ++ + +H G +  
Sbjct: 309 DMVQIIVSNDGQAIPKDALGKLFDRFYRVEESRSPKTGGSGLGLAITKTIVEMHHGTI-F 367

Query: 775 SSSDEGVTTINCRIP 789
            +S++ +T+    +P
Sbjct: 368 CTSNQKLTSFIIDLP 382


>gi|317155002|ref|YP_004123050.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316945253|gb|ADU64304.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 688

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 28/249 (11%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-----------------KTS 597
           L + N AL K DE+K + +  VS++LR+PLT+++GF+ L+                 + S
Sbjct: 427 LEQANAALTKLDELKTAVLNTVSHDLRTPLTSVLGFSKLIDRDFNRHFLPLAMEGGSECS 486

Query: 598 KLGSLNSKQSQY---VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L +K  +    +  I      L  LVND LDL+ +++G    N + +    L+   
Sbjct: 487 APDDLRAKGERIRANLAIIEQEGGRLTRLVNDFLDLSKLESGGAIWNDAPLDPAPLIERA 546

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +     +  +  ++   G L    AD  RLLQ+   ++ N   F+S+G+  +  +A 
Sbjct: 547 VPVLRGYFTDPAVTFEIDVAGPLPRITADPDRLLQVLGNLVGNGAKFTSRGTVRLSASAT 606

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLH 768
           D G    +V + G  IP +    VF  F       +N H    RG G+GL+I    +  +
Sbjct: 607 DQGWLRVAVSDTGVGIPPEHLARVFETFYQVRGDTTNGH--DMRGSGMGLAICRRIVGRY 664

Query: 769 GGHVSISSS 777
           GG ++  S+
Sbjct: 665 GGTLTAQST 673


>gi|284036807|ref|YP_003386737.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283816100|gb|ADB37938.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 644

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 165/360 (45%), Gaps = 37/360 (10%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           FR  +  E+ + S     + ++    R  N +   D   A++T   +  ++L+    +  
Sbjct: 288 FRYTYFNEQAKNSLPPDWQQVSDQTVRSINFAGNADQMVALLTHVVETGETLRRE-TITP 346

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAE----------RALTEKNEAL---------- 562
           D  + +S++      T++TF++VT   +AE          + + ++ +AL          
Sbjct: 347 DGKIIFSVVSKLGTGTIITFLDVTQQRQAEEQARYSAELEQKVADRTQALSLTLSELEQS 406

Query: 563 -----------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYV 610
                      R+  E+K  FV   S+E R+PLT I+  T LL K +++ +   +Q +++
Sbjct: 407 RNELERALAVERELSELKVRFVSMASHEFRTPLTTILTSTSLLEKYAEITNQQDRQLKHI 466

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRI 669
           E I  +   L +++ + L L  +  G + ++   + L+ L++E    I      + +I +
Sbjct: 467 ERIKIAVKHLNDILEEFLSLEKLQEGQINVHPVAVDLSQLVSETVHYIQDAFGQKQSIEV 526

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +   G +     D     +I   +LSNA+ +S   + + ++A  DN   I SV++ G  
Sbjct: 527 ALSCPGSIN---LDPSLFRKILINLLSNAVKYSGPETEIKIQAFCDNSLLILSVQDQGIG 583

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ED  K +F RF    +    +G GLGL IV  +I L GG ++++S     TT+   +P
Sbjct: 584 ISEDDQKRLFERFFRAKNVSTIQGTGLGLHIVNRYIRLMGGQINLASELNVGTTLTVTLP 643


>gi|170757594|ref|YP_001782071.1| putative phosphate regulon sensor protein [Clostridium botulinum B1
           str. Okra]
 gi|169122806|gb|ACA46642.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 569

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF++ LK          + ++++ I+  +  L 
Sbjct: 340 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 396

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL L+ ++    +L    I LN+L+ +V   +     + NI+I ++ + K+   +
Sbjct: 397 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGE-KIPLLI 455

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            ++ +  Q+   ++ NA+ ++     V +   +D G+ +F V++ G  I E+    +F R
Sbjct: 456 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFER 515

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +    G + + S  +  T    +IP
Sbjct: 516 FYRVDKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|154000881|gb|ABS57008.1| ethylene receptor [Pyrus pyrifolia]
          Length = 741

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 135/265 (50%), Gaps = 36/265 (13%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARGLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI- 658
                +Q   VE I  SS +L  LVND+LDL+ ++ G ++L  +T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILRSSNLLATLVNDVLDLSRLEDGSLQLEIATFNLHSVFREVHNMIK 431

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------K 711
               +   ++ + + +D  + + + D +RL+Q    ++ NA+ FS +GS  I       +
Sbjct: 432 PVASIKRLSVTLNIAADLPMYA-IGDEKRLMQTILNVVGNAVKFSKEGSISITAFVAKSE 490

Query: 712 AARD--NGDFI-----------FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + RD    DF              VK++GS I P+D+ K +F +F        R   G G
Sbjct: 491 SLRDFRAPDFFPVQSDNHFYLRVQVKDSGSGINPQDIPK-LFTKFAQTQTLATRNSGGSG 549

Query: 756 LGLSIVESFINLHGGHVSISSSDEG 780
            GL+I + F+NL  G + I S   G
Sbjct: 550 PGLAICKRFVNLMEGRIWIESEGLG 574


>gi|58581450|ref|YP_200466.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae KACC10331]
 gi|58426044|gb|AAW75081.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae KACC10331]
          Length = 1210

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 17/239 (7%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 809  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 865

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 866  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQL 925

Query: 668  RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSV 723
                  D  L  +   D  R+ QI   +L NA+ F+ +GS  +  AA            V
Sbjct: 926  AFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTERGSVHLRIAALPQHTQQGIRVEV 985

Query: 724  KNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V++SS
Sbjct: 986  RDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGSVTVSS 1041


>gi|262198017|ref|YP_003269226.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262081364|gb|ACY17333.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 507

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 555 LTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ + EA  +A E+   +  F+  +S+E+R+PL  ++G T LLK ++L   + +Q + +E
Sbjct: 131 ISAQREAELRARELARARTQFLAVMSHEIRTPLHGMLGITHLLKKTEL---SDEQQRLLE 187

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK- 670
            + +S   LL ++NDILD A  D   + L+     +  +L  +      +  +  +R   
Sbjct: 188 IVESSGESLLLVINDILDFAKADERRLSLSPHAFEVRAMLTGIANLFGPRAKQKGLRFSC 247

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             + G  G+   D  RL QI   ++SNA+ F+ +G  V L A R+     F V + G  +
Sbjct: 248 TAAPGLQGAAWGDGHRLRQILINLVSNAIKFTERGG-VALSARREGESLHFEVVDTGVGV 306

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +   + +F  F        RR  G GLGL+IV       GG V +SS+    +    R+
Sbjct: 307 AD--TERIFLAFEQEDASITRRYAGTGLGLAIVRLLAEQMGGEVGVSSTVGEGSRFWLRV 364

Query: 789 PSKE 792
           P +E
Sbjct: 365 PMRE 368


>gi|255016481|ref|ZP_05288607.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|298377751|ref|ZP_06987702.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
 gi|298265454|gb|EFI07116.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
          Length = 571

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 116/216 (53%), Gaps = 1/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ +++G++N +Q    E I  SS  LL
Sbjct: 344 FKELDSAKTTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAESIKESSNRLL 403

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            + +++L +  V+AG ++LN       +L+    ++   +    N  I+V    K+    
Sbjct: 404 EITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLF 463

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +++  + + +LSNA+ ++ +   +I+ A + +      V++ G  I     +S+F+R
Sbjct: 464 VDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDPRYHQSIFDR 523

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +       + +G GLGL+I + F+  HGG +S+ S+
Sbjct: 524 YF-RVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSA 558


>gi|242281150|ref|YP_002993279.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242124044|gb|ACS81740.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 596

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++ + ++  FV +VS+ELR+PLT++ G+ + L  S      S Q  ++  I  ++  + 
Sbjct: 359 IKRLETVRQDFVANVSHELRTPLTSVKGYAETL-LSDPPPPESIQKNFLATIEKNANHMC 417

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +V+D+L+L+ +++G  K+    I   D L E  ++ +    +  + +K   +    + +
Sbjct: 418 KIVDDLLNLSRLESGHEKVELMPIDPTDALREAWEACSGLAKKRKVDLKRSFEKGDFTVM 477

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  +L+Q+F  +L N + +  + + VI++     G   F+V ++G  IP      +F R
Sbjct: 478 ADSGQLMQLFRNLLENGIKYGPEENPVIVEHRVREGRLQFAVIDSGPGIPAADQPRIFER 537

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           F  V    R +    GLGL+I    ++ HGG +S+    EG
Sbjct: 538 FYSVEKFRRNEFGSTGLGLAISRHIVSNHGGEISVQCPPEG 578


>gi|171317076|ref|ZP_02906280.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171097777|gb|EDT42601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1093

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 149/309 (48%), Gaps = 17/309 (5%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           A + SR ++  D W     + TS+D +R      L +L+  +    ++ L      L   
Sbjct: 500 AISASRMHSLRDRWQFSRQVRTSWDRQR------LRILTIVLGTLLMVVLFLVWNYLLRK 553

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +    RAE  L    E    A   K++F+  +S+E+R+P+  ++G  +LLK S+ G++ 
Sbjct: 554 EIRLRKRAEGDLAAAIEVAEDASRAKSTFLATMSHEIRTPMNAVLGVLELLKQSR-GTIE 612

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S QS  ++    S+  LL+L+ DILDL+ +++G ++L    I  + L+  V         
Sbjct: 613 S-QSASIDAAYDSAHALLSLIEDILDLSKIESGKLELAPEPIDCDALVRSVANVFEGLAR 671

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKA-ARDNGD 718
           + ++   V I + +  S   D  RL QI S +LSNA+ F+  G      +L+A A+D   
Sbjct: 672 QRHLLFSVSIDNPRRLSVTIDPIRLRQILSNLLSNAVKFTHTGGVSLEAMLRADAQDQVH 731

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSIS 775
               VK+ G  I     + +F  FV  A R    +  G GLGL+I    + L GG +++ 
Sbjct: 732 IELRVKDTGIGIAAGEQEKLFQPFV-QADRTIGAKFGGSGLGLAICRRLVELMGGALTLK 790

Query: 776 SSDEGVTTI 784
           S+    TT+
Sbjct: 791 STPGVGTTV 799


>gi|74317286|ref|YP_315026.1| Hpt sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC
           25259]
 gi|74056781|gb|AAZ97221.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 781

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A   A + K+ F+  +S+E+R+P+  ++G  +LL  S   SL+ +Q  + E +  S   
Sbjct: 256 KAAEAASQAKSDFLATMSHEIRTPMNGVLGMNELLLGS---SLDPQQRMWAESVQHSGQH 312

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKL 677
           LL ++NDILD + +++G + L      L +L+++  +  A +     + +  ++    + 
Sbjct: 313 LLGVINDILDFSKIESGHLSLETVDFDLVELIDDTMRMFAHQAEHKGLELACRITPSQRT 372

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDM 734
                D  RL QI + ++ NA+ F+  G+ V+     DNGD       V++ G  I  + 
Sbjct: 373 IGLRGDPFRLRQIVANLVGNAIKFTEHGAVVVHATVNDNGDAAAVGLCVEDTGIGIAPEA 432

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              +F  F        RR  G GLGL+I     NL G  ++++S+
Sbjct: 433 QARIFEHFSQADGSTTRRFGGTGLGLAICRRLANLMGSDITVASA 477


>gi|70725697|ref|YP_252611.1| hypothetical protein SH0696 [Staphylococcus haemolyticus JCSC1435]
 gi|123776170|sp|Q4L8M0|HSSS_STAHJ RecName: Full=Heme sensor protein hssS
 gi|68446421|dbj|BAE04005.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 456

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 15/234 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           ++L++ D+++  FVQ+VS+E+++PLT+I     LL T +      ++ Q +  I    T 
Sbjct: 231 QSLKQVDDMRQHFVQNVSHEIKTPLTHI---HRLLSTLQSNVNQGERDQIIHEIHEEVTH 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE----NNIRIKVISDG 675
           L NL  ++L L+ +D          +   +L+ ++ +      HE    +N ++ ++SD 
Sbjct: 288 LSNLTKELLLLSELDNATHLKFEDDVHFKELITDIIR------HEQYGIDNKQLMLMSDI 341

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
               F  + + L Q  S ++ NA+ +S+  S + +    + G   F+V N G +IPE + 
Sbjct: 342 DTVHFRGNNRLLHQACSNLIQNAIKYSNPNSMIDVNLFNNEGTIYFTVTNEGHTIPESVQ 401

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF       +    GLGL+I +S I+LH G +S++S+D   TT    +P
Sbjct: 402 PHLFDRFYKR--NAEDNSNGLGLAITQSIIHLHRGQISVTSNDRDGTTFTVTLP 453


>gi|117929307|ref|YP_873858.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus
           11B]
 gi|117649770|gb|ABK53872.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus
           11B]
          Length = 637

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 115/210 (54%), Gaps = 10/210 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PL  I+GF+ LL+  +L     +Q ++V  I  +   LL+L+N++LD+ 
Sbjct: 270 FLSRMSHELRTPLNVILGFSQLLQMERL---TDEQQEWVNQIFKAGRHLLDLINEVLDIT 326

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQI 690
            +++G + L+   + L D++ E   ++A    E  +    VI D  + +  ADRQRL Q+
Sbjct: 327 RIESGRLALSLEAVSLRDVIGETMVALAPLAAEREVTADWVIEDDDV-TVRADRQRLRQV 385

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCK--SVFNRFVSNAH 747
              ++ NA+ ++ +G TV++ A R     +  V + G  I PE + +    F+R  ++A 
Sbjct: 386 MLNLVVNAIKYNRRGGTVLVSARRCADRALIRVADTGIGIAPEHIERLFVPFDRLGADAI 445

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +  G G+GL +    + +  G +++ S+
Sbjct: 446 DAE--GTGVGLPLTLRLVQVMDGELTVDST 473


>gi|170718893|ref|YP_001784065.1| multi-sensor hybrid histidine kinase [Haemophilus somnus 2336]
 gi|168827022|gb|ACA32393.1| multi-sensor hybrid histidine kinase [Haemophilus somnus 2336]
          Length = 618

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 121/235 (51%), Gaps = 7/235 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V++ + AER L+     + K  + K + +  +S+ELR+PL  IIG + +L   K   L  
Sbjct: 98  VSERILAERKLSVALSEIEKTSQDKTALMTTISHELRTPLNGIIGLSQILLDDK---LTE 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  Y++ I+ S+  L ++ +DI+DL  +DA  ++L+Y    L   LN++         +
Sbjct: 155 QQRNYLKTINVSAISLTHIFSDIIDLEKIDANRIELHYQPTNLCSFLNDITNFATLMAAQ 214

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFS 722
             ++ +++ D  L  ++  D  RL QI   +++NA+ F+  G  + LK +R   D F F+
Sbjct: 215 RKLKFELVCDKDLPDWLMLDSARLSQILWNLINNAVKFTPAGK-IKLKVSRLTDDTFSFA 273

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           + + G  I +     +F  +        +  G G+GL++ ++   L GG +++ S
Sbjct: 274 LSDTGVGIAKGELDKIFTMYYQVQETDHKPIGSGIGLAVSKAIAGLMGGDLTVES 328


>gi|332701527|ref|ZP_08421615.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551676|gb|EGJ48720.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 945

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 13/243 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD +R E+ L +  E    A   K++F+ ++S+E+R+PL +I    +LL +     ++
Sbjct: 541 DITDLLRLEQELRQAKETAESASRAKSTFLSNMSHEIRTPLNSIQSVIELLPSL---DIS 597

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            + + YV     S++ LL L+N++LDL+ +++G  +L         LL  + + +A    
Sbjct: 598 EEAASYVRIAEQSASHLLRLINNLLDLSRIESGKTELARKPFEPRHLLQAILRPLAVTAG 657

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNG 717
              + + V ++D      + D  RL QI   ++ NA+ ++  G   I         R++G
Sbjct: 658 TKGLDLAVAVADDVPVRLMGDELRLGQILMNLVGNAIKYTDTGRISISVKRDAACGREDG 717

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFN--RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               +FSVK+ G  I +D C+ +F   R V +  R      GLGL I    +   GG + 
Sbjct: 718 RIRLLFSVKDTGIGIHQDRCEHIFEGFRHVLDLDRPSSESAGLGLQISTQLVEQMGGRIW 777

Query: 774 ISS 776
           + S
Sbjct: 778 VES 780


>gi|310641973|ref|YP_003946731.1| hybrid sensory histidine kinase bara [Paenibacillus polymyxa SC2]
 gi|309246923|gb|ADO56490.1| hybrid sensory histidine kinase BarA [Paenibacillus polymyxa SC2]
          Length = 853

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A  +K + + +++  K+ F+ H+S+E+R+PL  IIG + LL  ++L  +   Q  Y+  
Sbjct: 205 KASEQKRKEMSESNHAKSIFLAHMSHEIRTPLNGIIGLSKLLSKTQLTDV---QKDYLHK 261

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + ASS  L++++N++LD + ++A  ++L      L ++L  +  +I T +    I +  I
Sbjct: 262 LLASSRTLIDILNNVLDFSKIEACKLELERVEFELENMLRHLADTIGTLLEHKEIEVVFI 321

Query: 673 SDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG--DFIFSVKNNG 727
           +D +L  SF  D  R+ Q+   +++NA+ F+ +G  +  +    + +G     F V++ G
Sbjct: 322 TDPELPKSFKGDPLRMEQVLLNLMTNAIKFTDQGHVLLQVKMVGQQDGRVSVTFMVEDTG 381

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
             I +     +F  F   +    R  G GLGL+I +      GG V + S
Sbjct: 382 IGISKTGMDKLFVPFTQVSTSTHRYGGSGLGLAISKQLAEAMGGSVEVKS 431


>gi|303246258|ref|ZP_07332538.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492321|gb|EFL52193.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1229

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 13/227 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISAS 616
           + EA+R A++ K+ F+  +S+E+R+PL  +IG + L LKT     L  +Q  Y+  I +S
Sbjct: 480 RQEAVR-ANQAKSEFLARMSHEIRTPLNAVIGMSHLALKT----ELTPRQEDYLTKIRSS 534

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +  LL ++NDILD + ++AG   +      L+ +L  V   +     E  +   + + D 
Sbjct: 535 ADTLLAVINDILDYSKIEAGRFVIERIPFDLDAVLGNVVDIMGPGAAEKQLEFLLSVGDD 594

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIP 731
                V D  RL Q+   ++ NA+ F+  G  ++     KA  D     F+V++ G  + 
Sbjct: 595 VPSWLVGDPLRLGQVLLNLVGNAVKFTDSGEVLVEVRLEKAVADAARLRFAVRDTGIGMT 654

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +   ++F  F        RR  G GLGLSI    + L GG++++ S
Sbjct: 655 PEQKHNLFRPFAQADGSISRRYGGTGLGLSICHRLVELMGGNLAVES 701


>gi|196229923|ref|ZP_03128787.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196226249|gb|EDY20755.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1947

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 18/257 (7%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A  AL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ KQ  +
Sbjct: 1255 QARSALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLAENGAGNLSEKQVDF 1314

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++   LLNL+NDILDL+ +++G + +    I    L   V+++        N+  
Sbjct: 1315 ARNIHSAGADLLNLINDILDLSKIESGTVAVEAEDITFASLRESVERNFRHIADNKNLPF 1374

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------- 717
             V  D  L   F  D +RL QI   +LSNA  F+S+G   +   A   G           
Sbjct: 1375 YVDFDPALPRQFSTDSKRLQQIIKNLLSNAFKFTSQGQVSMKAEAATEGWTVDHPVLKRA 1434

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
                  S+++ G  I  +  + +F  F   A  G  R   G GLGL+I      L GG +
Sbjct: 1435 PNVIALSIRDTGIGIAPEKQRLIFEAF-QQADAGTSRKYGGTGLGLAISRELATLLGGEI 1493

Query: 773  SISSSDEGVTTINCRIP 789
             ++S     +T    +P
Sbjct: 1494 RLNSVPGEGSTFTLYLP 1510


>gi|17229338|ref|NP_485886.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130936|dbj|BAB73545.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 680

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 15/256 (5%)

Query: 546 TDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ +RA+  R  T + EA    + +K+ F+  +S+ELR+PLT+++G++ +L+  KL    
Sbjct: 270 SEEIRAQVIREQTARQEA-EATNRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLD--E 326

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              ++ +E I  ++   + L+ DILD++ +  G ++LN S + L  ++    +++     
Sbjct: 327 KATARALEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLITVVEAALEAVRPLAD 386

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--- 720
             N+ I  + D  L     D  RL QI   +L+NA+ F+ K   V ++    NG+     
Sbjct: 387 TKNMTINTVLDYTLSPVSGDFARLQQIVWNLLTNAIKFTPKEGQVEIRLEGINGELSDDL 446

Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 V + G  I  +    VF RF        R   G+GLGL+IV   + LH G +  
Sbjct: 447 THAQIQVIDTGVGIASEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHNGTILA 506

Query: 775 SSSDEGV-TTINCRIP 789
            S   G   T   R P
Sbjct: 507 ESPGVGKGATFTVRFP 522


>gi|322688822|ref|YP_004208556.1| two-component sensor kinase [Bifidobacterium longum subsp. infantis
           157F]
 gi|320460158|dbj|BAJ70778.1| two-component sensor kinase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 358

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 13/235 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  E    L  AD+++   + +VS+ELR+P++ +    + +       +       +E 
Sbjct: 117 RSFNEMAGELEHADKMRRDMIANVSHELRTPVSALQAMVENMADG----VTEPTPTNLES 172

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN       D L+E  +   IA   H ++IR+ 
Sbjct: 173 ILTQTQRLSDLIAFLLDLSRMEAGAASLNIEKFNFADFLDETIEPLEIADGGHAHDIRVT 232

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGS 728
           V +D  +     D+ RL Q+F+ I++NA+  S+ G+TV++ A  D   G  + +V N GS
Sbjct: 233 VPADITME---GDQDRLRQLFTNIIANALKHSADGTTVLVDAHEDENQGTIVTNVVNFGS 289

Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            I       +F RFV        +  G GLGLSI      LHGG V +     G 
Sbjct: 290 QIAPSDRLDIFRRFVKGKTGPGTESGGTGLGLSIAHWAAQLHGGTVKVVDDTRGA 344


>gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii]
 gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii]
          Length = 823

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 122/254 (48%), Gaps = 10/254 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L     T  ++A   LT    A  +A + K+ F+ ++S+E+R+P+  I+G + L+  + 
Sbjct: 367 VLVLQRTTQLLKANEELTASRTAAEQASQAKSDFLANMSHEIRTPIHGILGMSALVLAT- 425

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q   +  +   + +LL+L+N ILD+A ++AG  ++   +  L  ++      +
Sbjct: 426 --GLTEEQRDNMTTVKDCADMLLHLINGILDVAKIEAGRFEVELVSFNLCHVIKSTLHIL 483

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  E  +R+K   D ++ +  V D  +L      ++ NA+ F+ +G   +  A   +G
Sbjct: 484 EPRAREKRLRLKWDVDARVPTVLVGDSGKLRHCLLNLVGNALKFTHQGYVQVTVAPYVDG 543

Query: 718 ---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                +F V ++G  +  D   ++F  F        R   G GLGL IV+ F+ L GG +
Sbjct: 544 LYPSLVFRVSDSGIGVSRDKLSNIFKPFTQADPSISRLYGGTGLGLCIVQRFVELMGGQI 603

Query: 773 SISSSDEGVTTINC 786
            +  S+ G  +  C
Sbjct: 604 CV-ESEYGTGSTFC 616


>gi|299145281|ref|ZP_07038349.1| RteA, two-component system histidine kinase, with response
           regulator receiver domain protein [Bacteroides sp.
           3_1_23]
 gi|298515772|gb|EFI39653.1| RteA, two-component system histidine kinase, with response
           regulator receiver domain protein [Bacteroides sp.
           3_1_23]
          Length = 805

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           ++++LR+PL  + G+ +L+     G    ++ +Y  +I  SS  ++ LVN +++   +DA
Sbjct: 335 IAHDLRAPLAAVRGYAELMPGEADGK---RKDEYATHIVCSSDYMIGLVNSLIEFYLLDA 391

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---IKVISD-GKLGSFV-ADRQRLLQI 690
           G  K+N +      L +E+      K+H   +R   + + +D  +L   V  DR R++QI
Sbjct: 392 GKGKMNVAVFRPLSLFDEI-----VKLHTPTVRKAGLLLCTDFSELDIVVEGDRPRIMQI 446

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            + +LSNA+ F+ KG  + L+AA   G+  FSV++ G  + E   + +F+ F    +   
Sbjct: 447 ANNLLSNAIKFTRKGK-ISLQAAYRQGELHFSVQDTGPGMTEHELRRIFSAFERLDNARH 505

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL++V     L GG V++ S     +     +P  E
Sbjct: 506 LPGFGLGLAVVSRLTELLGGRVTVESCPGTGSLFRVALPLPE 547


>gi|297521246|ref|ZP_06939632.1| hybrid sensory histidine kinase BarA [Escherichia coli OP50]
          Length = 583

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 123 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 178

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 179 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 238

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 239 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 298

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 299 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 340


>gi|229529315|ref|ZP_04418705.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 12129(1)]
 gi|229333089|gb|EEN98575.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 12129(1)]
          Length = 1176

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 614 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 673

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 674 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 729

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 730 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 788

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 789 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 848

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 849 LMNGKIKVKSEFEQGTQIQVNLP 871


>gi|254465743|ref|ZP_05079154.1| sensor histidine kinase [Rhodobacterales bacterium Y4I]
 gi|206686651|gb|EDZ47133.1| sensor histidine kinase [Rhodobacterales bacterium Y4I]
          Length = 339

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 12/251 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKAD-EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           F +  D  RA+    E + A R+ +   +  F+  + ++LR+PL+ +     LL+     
Sbjct: 96  FCSARDVTRAKE--NEAHLATREQEARFREQFIAVLGHDLRNPLSAVGAALRLLENEPQ- 152

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIV-LNDLLNEVKQSI 658
             ++K  + +     S T + +L+NDILD A    G  ++++++    L  +L++  + I
Sbjct: 153 --SAKALEILALGRQSVTRMSSLINDILDFARARLGNGVEIDHAEKTDLRPVLSQTVEEI 210

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   +R +      LG    D +R+ Q+ S +LSNA+   + G  V + A  D GD
Sbjct: 211 RLANPGTELREEYSFQDPLG---CDPERMAQLVSNLLSNAVTHGTPGKPVTVTARDDGGD 267

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           FI SV N+G+ IP +    +F  F     R  + G+GLGL I +     HGG ++ + SD
Sbjct: 268 FILSVTNSGAPIPAETMGRLFEPFTRAEMRASQNGLGLGLFIAQQIAKGHGGLLT-AQSD 326

Query: 779 EGVTTINCRIP 789
           E  T    R+P
Sbjct: 327 EQTTVFTLRMP 337


>gi|188575996|ref|YP_001912925.1| two component sensor-regulator hybrid protein RpfC [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188520448|gb|ACD58393.1| two component sensor-regulator hybrid protein RpfC [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 718

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 17/232 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+ +Q + +  
Sbjct: 166 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDVEQKECLNT 222

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IK 670
           I AS+  LL+LV ++LD++ ++AG ++++     L DL+  V   +  +     +    +
Sbjct: 223 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLRDLIGSVNMILQPQAKTRGLDYGTE 282

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724
           V +D        D   L Q+   +L NA+ F+  G  V+L+ AR  G+        F V+
Sbjct: 283 VATDVP-DLLKGDTGHLRQVLLNLLGNAVKFTDHGH-VLLRVARLAGNGADTVRLRFDVE 340

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           ++G  +P DM   +F  F   A  G  R   G GLG +I +  I   GG + 
Sbjct: 341 DSGIGVPMDMRPRMFEAF-EQADMGLSRRYEGTGLGTTIAKGLIEAMGGAIG 391


>gi|149910443|ref|ZP_01899084.1| sensor histidine kinase FexB [Moritella sp. PE36]
 gi|149806502|gb|EDM66473.1| sensor histidine kinase FexB [Moritella sp. PE36]
          Length = 782

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 11/232 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL KA   K +F+  +S+ELR+PL  ++G + +L  S   SLN++Q Q+
Sbjct: 264 RDITERKKYQDALEKASRDKTTFISTISHELRTPLNGVVGLSRILLDS---SLNAEQRQH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S+  + N+ NDI+DL   D    ++    I     LN+++     ++ +  + +
Sbjct: 321 LNTIYVSAHTMGNIFNDIIDLDKFDRRKFEIVNQPIEFRSFLNDIETLALLQVEQKGLVL 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVK 724
                G +  F+ AD  R+ Q+   ++SNA+ F+  G   I     + A +     F V+
Sbjct: 381 AFDIFGDIPDFINADGTRMRQVLWNLVSNAVKFTDSGEISIRIFTSEEANNKIGLTFEVE 440

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  I  D    +F  +       +  G G+GLS+ +S +   GG + +SS
Sbjct: 441 DTGIGISADGQDKIFAMYYQEQGSKRATGTGIGLSVAKSLMTAMGGDIWVSS 492


>gi|90415044|ref|ZP_01223004.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK]
 gi|90323858|gb|EAS40464.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK]
          Length = 697

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 116/216 (53%), Gaps = 9/216 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+PL  ++G  D L  S    L+ KQ ++V  +  S+ +LL ++
Sbjct: 325 ANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDS---GLDEKQMEWVSQMEQSAQLLLTII 381

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVAD 683
           NDILDL+ +++G  +L  + I + D +N V   +  +    NI +    D  +  S + D
Sbjct: 382 NDILDLSRIESGKFELFNADIHIADSINLVVNQLNEQAKRKNITLTTQIDASVPDSMLGD 441

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           + R+ Q+   ++ NA+ F++ GS  V +KA  +N +   +V + G  I     K++FN F
Sbjct: 442 KNRIAQVMFNLIGNAIKFTNVGSVRVSVKAVNNNIE--IAVIDTGIGIAPYAQKTLFNPF 499

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +       RR  G GLGL+I    I    G++S+ S
Sbjct: 500 IQADGSITRRYGGTGLGLAISMHLIKKMDGNISLDS 535


>gi|86158207|ref|YP_464992.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774718|gb|ABC81555.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 621

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 18/269 (6%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +SV  Y   P+ +    + F + T  +R E       + LR+A + +   +  VS++LR+
Sbjct: 356 NSVAAY---PVTDGGVAVFFRDATRRMRDE-------QRLRQARDFEQQLIGIVSHDLRN 405

Query: 583 PLTNII-GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKL 640
           PL  I+ G + LL    L   N      +   +  +T    L+ D+LDL      G + +
Sbjct: 406 PLNAILLGTSSLLAREDLSDRNVASIARIRSAAERAT---RLIRDLLDLTRARLGGGIPI 462

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 L  +  +V   +     +  I ++  S    G +  D  R+ Q+   +++NA+ 
Sbjct: 463 QPRPTELRQVAQQVVDELEPSYPDRPILVEA-SGNTQGHW--DPDRIAQVIGNLVTNALK 519

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           + ++G+ V +  A ++G+ + SV N G  IP ++  ++F      A     R VGLGL I
Sbjct: 520 YGARGTPVTVGVAAEDGEVLLSVHNLGVPIPAEIIPTLFEPGGRAAPDPTGRSVGLGLFI 579

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
           VE   + HGG V + S +E  TT   R+P
Sbjct: 580 VERIADAHGGRVEVRSGEEDGTTFTVRLP 608


>gi|186685125|ref|YP_001868321.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467577|gb|ACC83378.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1870

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 42/278 (15%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +AE AL    EA   A++ K++F+ ++S+ELR+PL  I+GF+ L++     SLNS Q + 
Sbjct: 1351 QAEEALRIAKEAAETANQAKSAFLANMSHELRTPLNAILGFSQLMERDT--SLNSNQRES 1408

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +  I+ S   LLNL+ND+L+++ ++AG +        L  LL  +++    K     + +
Sbjct: 1409 LATINRSGEHLLNLINDVLEMSKIEAGQIIFTPEDFDLYLLLQTLQEMFQVKAQTKQLFL 1468

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV------------------IL 710
            K      L  ++  D  +L Q+   +L NA+ F+  G                     +L
Sbjct: 1469 KFEIAPNLPRYIQTDEGKLRQVLINLLGNAVKFTQTGGVTLRVRLGSEQGAGETGEEELL 1528

Query: 711  KAAR-----------------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQ- 750
              A+                  N  F+ F V++ G  I PE+M  ++F  FV      Q 
Sbjct: 1529 SPAQCPMPNAPCPIPNPQSPIPNARFLHFEVEDTGRGIAPEEM-NNLFQPFVQTTSGIQT 1587

Query: 751  RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + G GLGL+I   F+ L GG + ++S+    +T +  I
Sbjct: 1588 KEGTGLGLTISRQFVRLLGGDIYLTSTPRQGSTFSFDI 1625


>gi|332702974|ref|ZP_08423062.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553123|gb|EGJ50167.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 447

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 130/267 (48%), Gaps = 17/267 (6%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LPN Q +    +VT   R   AL E ++A   A+++K+ F+ ++S+ELR+P+  I+G + 
Sbjct: 183 LPNGQLLFILHDVTRHHRLLDALVETSQAATVAEKVKHEFLSNMSHELRTPIGGILGLST 242

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+      +    +QY++ I  S+  L  +V DIL++A ++A  +  N  T+ L   L 
Sbjct: 243 LLRP----KVEPGHAQYLDLIIQSAESLSAIVGDILEMAHIEASQVAPNPGTVELAPALA 298

Query: 653 EVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVI 709
           ++ + I  +    ++  I  IS       V   ++  +    +LSNA+ F+SKG  +  +
Sbjct: 299 QMFEEIRRQASAKDLEAILTISPRVPAQAVLAWEQTRKALDNLLSNAVKFTSKGWVNLFV 358

Query: 710 LKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVE 762
                + G     F+V ++G  I  +    +F  F       N H    +G GLGL++ +
Sbjct: 359 DHCVDETGRECLYFAVTDSGLGIASEDLPRLFQPFTQLERPLNKH---TQGTGLGLALAK 415

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
               L GG + + S     +T + R+P
Sbjct: 416 RLAELAGGSIWLDSEPGRGSTFHLRVP 442


>gi|329890191|ref|ZP_08268534.1| mmoS [Brevundimonas diminuta ATCC 11568]
 gi|328845492|gb|EGF95056.1| mmoS [Brevundimonas diminuta ATCC 11568]
          Length = 541

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 10/250 (4%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P   T + F  V+D VRA +AL       R+A E+++ F  ++S+E+R+PL  ++G    
Sbjct: 121 PETYTAIRF-EVSDHVRALKALELAQAEARQAAEVRDRFFANISHEVRTPLNAVLGLASA 179

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +   +L S+Q++ ++ I+ +   L  +++D+LDL+ + AG   L+ +   L   +  
Sbjct: 180 LAHT---TLTSRQTEMLKLITGAGDALRRVLDDMLDLSKMQAGQFSLSLTPFDLRTDIEA 236

Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VI 709
           V +       +  + + V  +    G  + D  R+ QI S ++SNA+ F+++G     V 
Sbjct: 237 VVEMRRAVAEDKGLTLDVAFAPSAQGQVIGDGVRITQIVSNLVSNAVKFTAEGRVSVRVD 296

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINL 767
           ++A  +    I  V++ G     +  + +F+ FV   +A   Q  G GLGLSI +S   L
Sbjct: 297 VRAEDNREHLIIEVEDTGMGFDAEAARRLFDPFVQADDAISRQFGGTGLGLSICKSLAEL 356

Query: 768 HGGHVSISSS 777
            GG ++  S+
Sbjct: 357 MGGEIAAESA 366


>gi|255082071|ref|XP_002508254.1| predicted protein [Micromonas sp. RCC299]
 gi|226523530|gb|ACO69512.1| predicted protein [Micromonas sp. RCC299]
          Length = 430

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 132/254 (51%), Gaps = 19/254 (7%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T  +VTD  +++  + E  E        K+SF+ ++S+E+R+PL  II  ++LL  S
Sbjct: 3   VLATARDVTDEYKSKLQMKEAKEKSEAMVIAKSSFLANMSHEIRTPLNAIIAGSELL--S 60

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN---DLLNEV 654
            +  L ++Q +  + +  +S  LL LV+D+LD + ++A  + LN     +    DL  E+
Sbjct: 61  YIPDLTAEQRELTDMVIRTSHTLLALVSDVLDFSKIEAEKLALNVKPFSIESCIDLSLEM 120

Query: 655 KQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            QSI      NN R+ +   I+       + D  R+ Q+ + ++SNA+ F+ KGS V LK
Sbjct: 121 -QSIKA----NNKRLVLNYCIASNVPQRLLGDDMRIRQVVTNLISNAVKFTPKGS-VELK 174

Query: 712 AARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
               +GD    +F V + G  IP D    +F  F  V+++    ++G GLGL+I    + 
Sbjct: 175 IRPSSGDSVTLLFEVIDTGVGIPPDDQSELFTAFHQVNSSRTRSQQGTGLGLAICLKLVR 234

Query: 767 LHGGHVSISSSDEG 780
           L  G +S+ SS  G
Sbjct: 235 LMQGDMSLVSSGVG 248


>gi|150006789|ref|YP_001301532.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935213|gb|ABR41910.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 571

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 116/216 (53%), Gaps = 1/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ +++G++N +Q    E I  SS  LL
Sbjct: 344 FKELDSAKTTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAESIKESSNRLL 403

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            + +++L +  V+AG ++LN       +L+    ++   +    N  I+V    K+    
Sbjct: 404 EITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLF 463

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +++  + + +LSNA+ ++ +   +I+ A + +      V++ G  I     +S+F+R
Sbjct: 464 VDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDPRYHQSIFDR 523

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +       + +G GLGL+I + F+  HGG +S+ S+
Sbjct: 524 YF-RVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSA 558


>gi|78221237|ref|YP_382984.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78192492|gb|ABB30259.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 763

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 162/360 (45%), Gaps = 35/360 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT---CS-----RYYNES 494
           ++EG+AV   +G++ L NPA + +++    R+  G  +  + A    C+     R   E+
Sbjct: 426 MAEGIAVTDREGKVILFNPAAQRIFEMVPPRVM-GHTLEELCAGGEFCALADYVRTMKET 484

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           D        +T   D   S++G         L  S+ P  +    L  V     V + R 
Sbjct: 485 DD-------LTPRRDVEMSMKG-------KKLTISLSPFCDQGGALAGV-----VMSVRD 525

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +T + +     D +K  F+  VS+EL++PLT+I G    +   +       + + +    
Sbjct: 526 VTGEEDV----DRVKTEFISTVSHELKTPLTSIKGSLQFIH-DRGEGFGGMEGELLSVCL 580

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  L+ LVNDILD+A +++G ++       +  L+    + +A    E+++ ++    
Sbjct: 581 RNTDRLIRLVNDILDIARIESGRLEFVPEPQDVRTLVTHSIEELAGYALEHDVSVENRCG 640

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     DR RL+Q+ + +LSNA+ FS +G  V++ A R +     SV + G  I    
Sbjct: 641 QDLPPIYGDRDRLVQVLTNLLSNAIKFSPRGERVVVTAERTSNYVAISVGDRGREILWSD 700

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F +F  + N+ R Q  G GLGL+I +  +  H G +  +    G       +P  E
Sbjct: 701 RGKLFKKFQLLDNSDRRQHGGTGLGLAICKEIVEHHHGRIFYNEGTGGGNVFTFTVPVYE 760


>gi|23465570|ref|NP_696173.1| histidine kinase sensor of two-component system [Bifidobacterium
           longum NCC2705]
 gi|239621791|ref|ZP_04664822.1| signal transduction histidine-protein kinase baeS [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|23326236|gb|AAN24809.1| histidine kinase sensor of two-component system [Bifidobacterium
           longum NCC2705]
 gi|239514982|gb|EEQ54849.1| signal transduction histidine-protein kinase baeS [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 358

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 13/235 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  E    L  AD+++   + +VS+ELR+P++ +    + +       +       +E 
Sbjct: 117 RSFNEMAGELEHADKMRRDMIANVSHELRTPVSALQAMVENMADG----VTEPTPTNLES 172

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN       D L+E  +   IA   H ++IR+ 
Sbjct: 173 ILTQTQRLSDLIAFLLDLSRMEAGAASLNIEKFNFADFLDETIEPLEIADGGHAHDIRVT 232

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGS 728
           V +D  +     D+ RL Q+F+ I++NA+  S+ G+TV++ A  D   G  + +V N GS
Sbjct: 233 VPADITME---GDQDRLRQLFTNIIANALKHSADGTTVLVDAHEDENQGTIVTNVVNFGS 289

Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            I       +F RFV        +  G GLGLSI      LHGG V +     G 
Sbjct: 290 QIAPSDRLDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVKVVDDTRGA 344


>gi|315646785|ref|ZP_07899900.1| GAF sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315277715|gb|EFU41039.1| GAF sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 672

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 100/178 (56%), Gaps = 2/178 (1%)

Query: 539 MLTFVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           M     + D +  +  + EK  + L+ A + K+ F+ ++S+ELR+PL +++  +++L  +
Sbjct: 495 MRKIEEIKDEIEKQNFMLEKQASDLQSASKYKSEFLANMSHELRTPLNSLLILSEILMGN 554

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K G+LN KQ  +   I +S   LL+L++DILDL+ V+AG MK+    ++L ++   +++S
Sbjct: 555 KEGNLNEKQVDFARTIHSSGNDLLHLIDDILDLSKVEAGQMKVELEPVILEEIKETLQRS 614

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                 +  I   + +  G   S   D QR+ QI   +LSNA  F+S+GS  I +  R
Sbjct: 615 FEPLAAKKGIEFHIEMEQGLPHSLHTDVQRVQQILKNLLSNAFKFTSQGSVTIARLTR 672


>gi|269137887|ref|YP_003294587.1| aerobic respiration control sensor protein ArcB [Edwardsiella tarda
           EIB202]
 gi|267983547|gb|ACY83376.1| aerobic respiration control sensor protein ArcB [Edwardsiella tarda
           EIB202]
 gi|304557940|gb|ADM40604.1| Aerobic respiration control sensor protein ArcB [Edwardsiella tarda
           FL6-60]
          Length = 778

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 14/250 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   LN +Q +Y
Sbjct: 264 RDITERKRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLDTE---LNEEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     L +++      +    +  
Sbjct: 321 LKTIHVSAIALGNIFNDIIEMDKLERRKVQLDNQAIDFTGFLTDLENLSGLLVQPKGLSF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNG 727
            +  D  L    +AD  RL QI   ++ NA+ F+ +G  V ++  R+  D  +F V++ G
Sbjct: 381 TLTPDPALPHKVMADGTRLRQILWNLIGNAVKFTQRGG-VSVRVWREQQDKLLFEVRDTG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS-SDEGVT- 782
             IP +    +F  +  V + H G+   G G+GL++ +      GG + +SS + EG   
Sbjct: 440 IGIPPEEQDKIFAMYYQVKDMHGGKPATGTGIGLAVSKRLAQTMGGDIVVSSVAGEGACF 499

Query: 783 TINCRIPSKE 792
           T++ R P  E
Sbjct: 500 TLSIRAPVVE 509


>gi|257094180|ref|YP_003167821.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046704|gb|ACV35892.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1138

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 126/261 (48%), Gaps = 26/261 (9%)

Query: 539 MLTFVNVTDSVRAERALTEKNE-----------ALRKA----------DEIKNSFVQHVS 577
           + T ++++D  RAE+ L E  E           AL +A          +  K  F+  +S
Sbjct: 686 LATAIDISDRKRAEQQLAEYGEHLEVLVDERTTALAQARTAIADAQAANAAKTEFLSRMS 745

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  I+GF  LL       L+++Q+  V+ I  +   LL  VN++LDLA +++G 
Sbjct: 746 HELRTPLNAILGFGQLLALPGDAPLSAQQADNVQEILRAGRHLLEQVNEVLDLARIESGR 805

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++L+   + L+ ++ E    +        + I    D  +    AD  RL Q+   +LSN
Sbjct: 806 IELSLEAVPLSSVVAECVALVRPLAEARGVSIDAAIDDSM--LQADPTRLRQVILNLLSN 863

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           A+ ++ +  TV L   R+     F+V ++G  I  +    +F  F  + +++ G   G G
Sbjct: 864 AIKYNREHGTVRLDNTREGERLRFAVTDSGRGIASEHLPRLFQPFERLESSYEGI-EGSG 922

Query: 756 LGLSIVESFINLHGGHVSISS 776
           +GL++ +  + +  G + + S
Sbjct: 923 VGLALSKRLVEMMAGSIRVDS 943


>gi|197106737|ref|YP_002132114.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196480157|gb|ACG79685.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 643

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L    +A   A+ +K  F+ ++S+E+R+PL  ++   +++    LG L   Q + +
Sbjct: 237 AMRELESARDAANAANVLKTQFLANMSHEIRTPLNGVLAMAEVMA---LGELAPLQRERL 293

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S  +LL ++ND+LDL+ ++AG + L      L   L++V+ +         +  +
Sbjct: 294 DVIRRSGGLLLAVLNDVLDLSKIEAGKLTLLDEDFELEPELDQVRDNFRIVALGKGLGFE 353

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V +++   G +  D  RL QI   +LSNA+ F+ +G           G     V + G  
Sbjct: 354 VTVAEEAQGWWRGDADRLRQIVGNLLSNAVKFTMQGGVRAHVDLTPAGALRIVVSDTGVG 413

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +   ++F +F    +   RR  G GLGL+I      + GG + + S +   +T    
Sbjct: 414 IAPEKLPTLFEKFTQADNSATRRFGGTGLGLAICRELTQMMGGSIDVESREGDGSTFTVE 473

Query: 788 IP 789
           +P
Sbjct: 474 LP 475


>gi|189439617|ref|YP_001954698.1| signal transduction histidine kinase [Bifidobacterium longum
           DJO10A]
 gi|227546167|ref|ZP_03976216.1| signal transduction histidine kinase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133016|ref|YP_004000355.1| signal transduction histidine kinase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|317481880|ref|ZP_07940907.1| hsp90-like protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690810|ref|YP_004220380.1| two-component sensor kinase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|189428052|gb|ACD98200.1| Signal transduction histidine kinase [Bifidobacterium longum
           DJO10A]
 gi|227213148|gb|EEI81020.1| signal transduction histidine kinase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|291517116|emb|CBK70732.1| Signal transduction histidine kinase [Bifidobacterium longum subsp.
           longum F8]
 gi|311774003|gb|ADQ03491.1| Signal transduction histidine kinase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316916671|gb|EFV38066.1| hsp90-like protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455666|dbj|BAJ66288.1| two-component sensor kinase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 357

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 13/235 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  E    L  AD+++   + +VS+ELR+P++ +    + +       +       +E 
Sbjct: 116 RSFNEMAGELEHADKMRRDMIANVSHELRTPVSALQAMVENMADG----VTEPTPTNLES 171

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN       D L+E  +   IA   H ++IR+ 
Sbjct: 172 ILTQTQRLSDLIAFLLDLSRMEAGAASLNIEKFNFADFLDETIEPLEIADGGHAHDIRVT 231

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGS 728
           V +D  +     D+ RL Q+F+ I++NA+  S+ G+TV++ A  D   G  + +V N GS
Sbjct: 232 VPADITME---GDQDRLRQLFTNIIANALKHSADGTTVLVDAHEDENQGTIVTNVVNFGS 288

Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            I       +F RFV        +  G GLGLSI      LHGG V +     G 
Sbjct: 289 QIAPSDRLDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVKVVDDTRGA 343


>gi|254828075|ref|ZP_05232762.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
 gi|258600459|gb|EEW13784.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
          Length = 591

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 10/236 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E NI++ +I +  + S
Sbjct: 416 LHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQV-IIPEKTIPS 474

Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      
Sbjct: 475 VTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEAIIEVTDNGIGIPAKDIDR 534

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VF RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 535 VFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|15896910|ref|NP_350259.1| sensor protein KdpD [Clostridium acetobutylicum ATCC 824]
 gi|18273032|sp|P94608|KDPD_CLOAB RecName: Full=Sensor protein kdpD
 gi|15026781|gb|AAK81599.1|AE007863_2 Sensor protein KdpD (ATPase containing sensor domain and histidine
           kinase domain) [Clostridium acetobutylicum ATCC 824]
 gi|325511086|gb|ADZ22722.1| Sensor protein KdpD (ATPase containing sensor domain and histidine
           kinase domain) [Clostridium acetobutylicum EA 2018]
          Length = 900

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 16/258 (6%)

Query: 545 VTDSVRAERALTEKNEALRKADE----------IKNSFVQHVSYELRSPLTNIIGF-TDL 593
           V D+V  + A+    E L K  E          ++++ ++ +S++LRSPL  I G  + +
Sbjct: 643 VVDTVTGQIAIALDREILSKEQEKSKVEIERERLRSNLLRSISHDLRSPLAGIKGAASTI 702

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+  +L     KQ + +  I   +  L+ L+ ++L +   D G  K+     ++ ++++E
Sbjct: 703 LENGELIDEKRKQ-ELINGIYEDTEWLIRLIENLLSMTKFDEGNTKIKKDVELVEEVVSE 761

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             Q  +     + I++ V  D  + S   D   + Q+   +L NA  FS KGST+ +K  
Sbjct: 762 AVQRSSKYFKNHKIKVSVPEDVIMVSM--DGSLIEQVIINLLDNASKFSPKGSTIEIKVY 819

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
               D +F + + G  I ED+  ++F+RF +N  +    RRGVGLGL+I +S +  HGG 
Sbjct: 820 EKKKDVVFEIIDEGQGISEDILPNIFDRFFTNGSKISDSRRGVGLGLAICKSIVEAHGGK 879

Query: 772 VSISSSDEGVTTINCRIP 789
           +   +   G       IP
Sbjct: 880 IEAVNKGSGGAIFKFNIP 897


>gi|331672528|ref|ZP_08373317.1| TMAO reductase sytem sensor TorS [Escherichia coli TA280]
 gi|331070171|gb|EGI41537.1| TMAO reductase sytem sensor TorS [Escherichia coli TA280]
          Length = 973

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 498 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADN--SALNA-QRDDLRAITDSGESLLTI 554

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    I +   I+D    + 
Sbjct: 555 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATAIADDVPTAL 614

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  +IL++  D   ++  V+++G  I       +F 
Sbjct: 615 MGDPRRIRQVITNLLSNALRFTDEGH-IILRSRTDGELWLVEVEDSGCGIDPTKLAEIFQ 673

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  +  G+R G GLGL+I        GG +S +S+ E  +    R+P
Sbjct: 674 PFVQVS--GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 720


>gi|326202144|ref|ZP_08192014.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987939|gb|EGD48765.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 374

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           KN AL +++  KN  V ++++++++PLT++IG+  LL  +    L  ++ +Y       +
Sbjct: 143 KNAAL-ESERRKNDLVVYLAHDIKTPLTSVIGYLSLLNEAPDMPL-EQRLKYTGITLEKA 200

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L+N+  ++   +   + L    I L  +L ++       +   N    V +D  L
Sbjct: 201 YRLEQLINEFFEITRFNLQSIVLEKEDINLTLMLEQMADEFYPVLAPENKEAIVSADENL 260

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             F AD  ++ ++F+ IL NA  +S + S +++ A + N   I + +N+G  IP D  +S
Sbjct: 261 HIF-ADSDKMARVFNNILKNAAAYSYENSKIVISAIQSNNVTIVTFRNSGKMIPADKLES 319

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F +F  + +A      G GLGL+I +  +NLHGG ++ ++S+E  T     +P
Sbjct: 320 IFEKFYRLDSARSSHTGGTGLGLAIAKEIVNLHGGDIT-ATSNEEFTQFKVTLP 372


>gi|167033531|ref|YP_001668762.1| Hpt sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166860019|gb|ABY98426.1| Hpt sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 1090

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 139/251 (55%), Gaps = 25/251 (9%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYI 613
           L +  +   +A + K++F+  +S+E+R+P+  +IG  ++ L  S+ G  ++   Q ++  
Sbjct: 585 LRQAKDDAEQASQTKSTFLATMSHEIRTPMNAVIGLLEMALVDSRGGRCDT---QTLQTA 641

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL L+ DILD++ +++G + L     V  DL+  V+ ++  ++ E N R K + 
Sbjct: 642 HDSAIGLLELIGDILDISRIESGHISLQP---VPADLVELVRSTL--RVFEGNARAKSLH 696

Query: 674 -DGKLGS----FVADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDNG--DFIFSV 723
             G++ +     +AD  RL QI S ++SNA+ F+++G   ++++L    D+G      +V
Sbjct: 697 LHGEMPAEPVWVLADPLRLKQILSNLISNAIKFTNRGEVQASLLLPNVADHGMLAITLNV 756

Query: 724 KNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I P D  + +FN FV       R+G GLGL I  + + L GG +++ S  EGV 
Sbjct: 757 RDTGIGISPADQAR-LFNAFVQAEGPRTRQGAGLGLVISRTLVELMGGALTLQSV-EGVG 814

Query: 783 T---INCRIPS 790
           T   +N ++P+
Sbjct: 815 TRVQVNLQLPT 825


>gi|254226752|ref|ZP_04920327.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V51]
 gi|125620729|gb|EAZ49088.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V51]
          Length = 1146

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIEVKSEFEQGTQIQVNLP 841


>gi|153801551|ref|ZP_01956137.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-3]
 gi|124122878|gb|EAY41621.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-3]
          Length = 1146

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIEVKSEFEQGTQIQVNLP 841


>gi|83589679|ref|YP_429688.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83572593|gb|ABC19145.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 604

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 3/216 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K ++++  F+  VS+ELR+PL+ I G+ + L    L +   ++ +Y   I A +  L  
Sbjct: 369 KKMEQMRREFLASVSHELRTPLSFIQGYGEAL-ADGLATGEKERQEYTGIILAEANRLRR 427

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+ DL  + AG + L  + +   +L+  V +     + E+ + ++V  +  L    A
Sbjct: 428 LVDDLFDLNKMAAGHLPLELAEVDPGELVTGVARKYQPLLAEHGLVLEVELEPYLPPVWA 487

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+   +L NA   +S G  + + A     +   SV + G  IP      ++ RF
Sbjct: 488 DAGRLEQVLVNLLDNARRHTSPGGRITISAGLAGRELKISVADTGKGIPAGELPYIWERF 547

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V  +      G GLGL+IV+  +  HGG V + S
Sbjct: 548 YKVDKSRSRGDSGSGLGLAIVKGLVEAHGGRVEVVS 583


>gi|325922143|ref|ZP_08183933.1| Signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325547378|gb|EGD18442.1| Signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 724

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 21/233 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + V  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECVNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----KQSIATKMHENNI 667
           I AS+  LL+LV ++LD++ ++AG ++++     L +LL  +      Q+ A  +H +  
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDQRDFSLRELLGAIGLILQPQARARGLHYSTQ 289

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSV 723
               + D   G    D   L Q+   I+ NA+ F+ +G  V+L+  R +        F V
Sbjct: 290 VAADVPDLLKG----DTGHLRQVLLNIVGNAVKFTEQGH-VLLRITRVSAGSALRLRFDV 344

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           ++ G  +P DM   +F+ F   A  G  R   G GLG +I +  +   GG + 
Sbjct: 345 EDTGIGVPLDMRSRLFDAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIG 396


>gi|295094558|emb|CBK83649.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 526

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 118/230 (51%), Gaps = 5/230 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R + E  + L +++E + SF+ ++S++ RSPLT+I G+ + +    +     K  +Y+  
Sbjct: 249 RYMEEMADELSRSNEYRKSFISNISHDFRSPLTSIKGYIEAMLDGTIPL--EKHEKYLGI 306

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L  L   +L+L   D+  ++L+ S   + D++     +   +  +  I +  +
Sbjct: 307 VLNEAQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTINTFEKRCKDRGIFLDSV 366

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                    ADR ++ Q+   ++ NA+ F+ +G  + ++    +     SVK+ G  IP+
Sbjct: 367 FLTDNTVVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVTEKDNKIYTSVKDEGVGIPK 426

Query: 733 DMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           D  K VF RF  ++  RG+ + G GLGL+I +  I  HG  +++ +S+EG
Sbjct: 427 DAQKKVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITL-TSEEG 475


>gi|239979784|ref|ZP_04702308.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 561

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 125/251 (49%), Gaps = 18/251 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---SKLGSLNSKQ 606
           R   AL ++ +A+   +E    FV  +S+ELR+PLT I   T++L+    ++ GS++   
Sbjct: 285 RTAAALEKQVDAMSDREEASRRFVADMSHELRTPLTAITAVTEVLEEELDAETGSVDPMI 344

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  +   +  L  LV +++++   DAG  +L   T+   D+ +++   I  +   + 
Sbjct: 345 EPAVRLVIGETRRLNTLVENLMEVTRFDAGTARLVLDTV---DIADQITACIDARAWLDA 401

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGD-F 719
           + +    D + G     D +RL  I + ++ NA+        V ++        + GD  
Sbjct: 402 VEL----DAERGIMAHVDPRRLDVILANLIGNALKHGGSPVRVSVRVEPPTVGEEAGDRL 457

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +  V+++G  IPE++   VF+RF  ++A R +  G GLGLSI     ++HGG +S ++S 
Sbjct: 458 VIRVRDHGPGIPEEVLPHVFDRFYKASASRPRSDGSGLGLSIAVENAHIHGGDISAANSP 517

Query: 779 EGVTTINCRIP 789
           EG      R+P
Sbjct: 518 EGGAVFTLRLP 528


>gi|237730664|ref|ZP_04561145.1| sensor protein KdpD [Citrobacter sp. 30_2]
 gi|226906203|gb|EEH92121.1| sensor protein KdpD [Citrobacter sp. 30_2]
          Length = 894

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 147/352 (41%), Gaps = 45/352 (12%)

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L   E  +L+P TH + +             WD  A    SFD  + +  GT  L     
Sbjct: 550 LLPGENGKLAPLTHQQGMTP-----------WD-DAIAQWSFDKGQPAGAGTDTLPG--- 594

Query: 526 LEYSIIPL----------------------PNAQTML-TFVNVTDSVRAERALTEKNEAL 562
           + Y I+PL                      P  Q +L TF  +  S      LT   E  
Sbjct: 595 VPYQILPLKSADKTHGLLVVEPGNLRQLMIPEQQRLLETFTLLVASALERLTLTASEEQA 654

Query: 563 RKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           R A E   I+N+ +  +S++LR+PLT + G  ++L T  L S  S  ++    I      
Sbjct: 655 RFASERESIRNALLAALSHDLRTPLTVLFGQAEIL-TLDLASEGSPHARQASEIRQHVLN 713

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
              LVN++LD+A + +G   L    + L +++    Q +   +   +  I +     L  
Sbjct: 714 TTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGL---SAPINLSLPAPLTL 770

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D     ++   +L NA+ ++   + + + A+ D       V +NG  IP  M + VF
Sbjct: 771 IHVDGPLFERVLINLLENAVKYAGPAAQIGIDASVDGEHLQLDVWDNGPGIPSGMEQRVF 830

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++F          GVGLGL+I ++ +++HGG +S+ +  +G       +P +
Sbjct: 831 DKFSRGNKESSVPGVGLGLAICQAIVDVHGGTISVHNRAQGGACFRVTLPQE 882


>gi|330796122|ref|XP_003286118.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum]
 gi|325083937|gb|EGC37377.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum]
          Length = 1758

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 192/395 (48%), Gaps = 35/395 (8%)

Query: 413  IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-E 471
            I  F  +   VDL+      +++Q  ++  +S    V   DG I  +NPAF S+++ + +
Sbjct: 685  ILTFYTILSSVDLKEIERKELRIQ--SLFRISNEALVVHKDGLITDANPAFESMFQIKLQ 742

Query: 472  NRLSP-GTHIRNIAATCSRYYNES-----DGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            + L P  + I          +        D  D+     T  D   ++ Q  +E+ ++  
Sbjct: 743  DLLYPIQSGIWEFLPALEGMFEPGASKTFDNSDIGVIETTGIDSSGRTFQ--VEVRTNKA 800

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRS 582
              Y   P+     +++ +++T      + L E + ALRKA+   E K  F+  VS+ELR+
Sbjct: 801  T-YGGEPV----DVISIIDIT----GRKQLMEADYALRKAEAANEAKVIFLTTVSHELRT 851

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK-LN 641
            P+  ++   D+L+ +   +L+S Q +++  I  S   LL+L+NDILD + ++AG M+ + 
Sbjct: 852  PINGVLASADILERT---TLDSTQKEFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIK 908

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMD 700
            Y   +L  L N ++  ++  ++E  + + V  D  +   +  D +R+ QI    LSN++ 
Sbjct: 909  YDFSILKMLDNGIR-IVSKNIYEKGLELCVFVDPNVPVIINGDGRRIKQILLNFLSNSIK 967

Query: 701  FSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
            F+++G  +I   L++  +    I   V+++G  I  +    +F  F  + + +  + +G 
Sbjct: 968  FTNEGQIIIRVKLESENEKESLIKIDVEDSGIGIKPEHLGQLFASFSQIDSGNSRKYQGT 1027

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI +    + GG V + S     +T +  IP
Sbjct: 1028 GLGLSISKRLCKMMGGDVHVKSEFGIGSTFSFTIP 1062


>gi|217037907|gb|ACJ76425.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 927

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 140/274 (51%), Gaps = 33/274 (12%)

Query: 526 LEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKAD---EIKNSFV 573
           ++ SI P+  PN        N+   +  ER +T+K E       A  KAD     K++F+
Sbjct: 355 IDVSITPILEPNG-------NIMHYIAVERDITKKKELEDKLIKAANKADVSNRAKSTFL 407

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PL  I+G   +++++     + +Q + ++ +  S   LL L+N+ILD + +
Sbjct: 408 ATMSHELRTPLNGILGMAQIIESN---IKDKEQHKQIKMLLESGDHLLFLLNEILDFSKI 464

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADRQRLLQI 690
           +   ++LN+++    D++  +  +  +     N  +K I D K+ +   F+ D+ R+ QI
Sbjct: 465 EQNKLELNHASFYFVDIIEPITNTYLSVCE--NKGLKFIIDNKINNEIVFIGDKPRIRQI 522

Query: 691 FSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              ++SNA+ F+ +GS  +        +        +K+ G  I E+  K +F  ++   
Sbjct: 523 IFNLISNAVKFTHEGSITLNFSHTLTGKGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAE 582

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
               R+  G GLGL+IV+   ++  G++S+SSS+
Sbjct: 583 ASTTRQYGGTGLGLAIVKQLTDIMRGYISVSSSE 616


>gi|149279767|ref|ZP_01885895.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149229565|gb|EDM34956.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 576

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 128/254 (50%), Gaps = 14/254 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +++  + AL E  E  R ADE K SF+  +S+ELR+PL  +IG   LL  +   + +  Q
Sbjct: 186 NTIHEKDALNE--ELARVADE-KTSFLSTMSHELRTPLNAVIGIAGLLTRN---NQDPAQ 239

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++ +  S+  L+ L+ND+LD+  +++G ++L      L  LL  V  S+     E +
Sbjct: 240 KEHLDILKFSAEGLVRLINDVLDVNKMESGKLELESVPFNLYQLLKSVSGSMVQGAEEKS 299

Query: 667 IRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFI 720
           I+     D KL    F+ D  RL QI   ++ NA+ F++ G+      +L+   D     
Sbjct: 300 IQFAADIDRKLEGRQFIGDPTRLSQIIYNLVGNAIKFTNFGAVTLRANLLRQLDDQYIIR 359

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F +++ G  I +   + +F+ +V  +    R   G GLGL+IV+  + + G  + I+S  
Sbjct: 360 FEIEDTGIGITKRQQEKIFDPYVQASETTTRNFGGTGLGLTIVKQLVLMFGSEIHINSKP 419

Query: 779 EGVTTINCRIPSKE 792
              TT    I  KE
Sbjct: 420 GFGTTFYFDIVFKE 433


>gi|120611753|ref|YP_971431.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
 gi|120590217|gb|ABM33657.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
          Length = 595

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 19/241 (7%)

Query: 549 VRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +R    L +KN AL       R A+  K+ F+  +S+ELR+PLT+I GF +L++      
Sbjct: 339 LRGLHQLEQKNLALAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAELMEQ----- 393

Query: 602 LNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              +Q  Y E    I +++  L  L+++ILDLA V AG M +      + +L+       
Sbjct: 394 -RLEQPSYREAAGLIRSAAEHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELVGTTVDLF 452

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A    +  + +++ I+ G       D  RL QI + +LSNA+ F+ +G   +     D  
Sbjct: 453 AISAVQKGLTLEMHIAPGVPQVLRCDGLRLKQILNNLLSNALKFTREGGVRLETDTADGH 512

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V + G  IP D+ + +F +F   +     Q  G GLGL++      L GG ++++
Sbjct: 513 SVRFRVTDTGPGIPADLHEVIFEKFSQGSADVSTQHGGTGLGLALSRGLAELMGGRLTVA 572

Query: 776 S 776
           S
Sbjct: 573 S 573


>gi|90578600|ref|ZP_01234410.1| hypothetical protein VAS14_02823 [Vibrio angustum S14]
 gi|90439433|gb|EAS64614.1| hypothetical protein VAS14_02823 [Vibrio angustum S14]
          Length = 700

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 129/252 (51%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  N+T   +    L E  +    A++ K+ F+  +S+E+R+PL  ++G   L+++  L 
Sbjct: 301 TAKNITSRKKRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLG---LMESLSLS 357

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN+KQ+ ++  +  S+ +LL ++NDILDL+ +++G  +L  S I + + +  V   +A 
Sbjct: 358 GLNNKQNLWLSQMDQSAHLLLAIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAP 417

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  +NN++ +  I D        D+ R+ Q+   ++ NA+ F+S GS  ++     + + 
Sbjct: 418 QAAKNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGSVRVVVRKV-DDNI 476

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +V + G  I +D   ++FN F        RR  G GLGL+I +  I    G +S+ S 
Sbjct: 477 EIAVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMNGTISLESE 536

Query: 778 DEGVTTINCRIP 789
               +     IP
Sbjct: 537 LGTGSCFKVSIP 548


>gi|296162545|ref|ZP_06845335.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           sp. Ch1-1]
 gi|295887253|gb|EFG67081.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           sp. Ch1-1]
          Length = 601

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 126/242 (52%), Gaps = 8/242 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L E  EALR+ D  K++F+  +++ELR+PL  I     +L+  ++ +    ++++  
Sbjct: 290 QRTLAE--EALRETDRRKDAFLATLAHELRNPLAPIRNAAQILR--QVRTDMPPEAEWAR 345

Query: 612 Y-ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +    + L  L++D++D++ + +G ++L      + + +    +      +E+  RI 
Sbjct: 346 MTVERQCSHLTRLIDDLMDVSRISSGKIRLQREVFDIREAVQGAVEISLPIANEHRDRIN 405

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V   G+      DR RL Q+ S +L NA+ +S+ G  + + AA  + +    V + G  I
Sbjct: 406 VSLPGEPVLVDGDRTRLTQVVSNLLDNAIKYSNDGIEITINAAVRDDEIEIVVTDQGIGI 465

Query: 731 PEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787
           P      +F  +V   +  G+ R G+G+GLS+V++ +++HGGHV  +S   G  +    R
Sbjct: 466 PASQLVHMFEAYVQLPSPDGRWRPGLGIGLSVVQNLVDMHGGHVIAASGGVGKGSRFTVR 525

Query: 788 IP 789
           +P
Sbjct: 526 LP 527


>gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 785

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 10/234 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+ A  +      +A   K+ F+ ++S+ELR+P+  I+G   LL+ ++L     KQ  Y
Sbjct: 244 QAKLAAEKARHTAEQASLAKSQFLANMSHELRTPMNAILGMLQLLEGTEL---TDKQRSY 300

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               ++++  LL+L+NDILD + V+AG M L+      + LL ++   ++  +    I +
Sbjct: 301 THNTASAARSLLSLLNDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILSANVGAKTIEV 360

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVK 724
              +      + V D  RL Q+   +  NA+ F+ +G  VI   LKA      F+ F+V 
Sbjct: 361 LFDVGTDVPNALVGDDMRLQQVLINLGGNAVKFTERGEVVIRLRLKATNGAKAFVEFAVS 420

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  I  +    +F+ F        RR  G GLGL+I +  + L GG + + S
Sbjct: 421 DTGIGIASENQAHIFSGFSQAEASTTRRFGGTGLGLAICQRLVGLMGGTLEVDS 474


>gi|262198449|ref|YP_003269658.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262081796|gb|ACY17765.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 699

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 130/263 (49%), Gaps = 18/263 (6%)

Query: 535 NAQTMLTFVNVTDSVRAERA--LTEKNEALR-------KADEIKNSFVQHVSYELRSPLT 585
            AQ    +V + D V AER   L E N ALR       +A   K++F+ ++S+ELR+PL 
Sbjct: 424 TAQLRDLYVTIEDKV-AERTAQLAEANLALRHARDAAERASRAKSTFLTNMSHELRTPLN 482

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G+T+LL+   +    S +   ++ I  +   LL LV ++LDLA ++AG + L    +
Sbjct: 483 AILGYTELLREEAVEQGESARFSDLDNIHQAGVHLLGLVEELLDLARIEAGKVTLIEVEV 542

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L+ ++    Q++A  + +N  R+++     LG    D  +  QI   +L NA  F+  G
Sbjct: 543 ELSAVVKRSLQTVAPVVEKNGNRMELDLASDLGRARLDEGKTRQILINLLGNAAKFTENG 602

Query: 706 STVI---LKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
              +    +AA D+G  I S  V + G+ I  +  + +F  F +      R   G+GLGL
Sbjct: 603 VITVRGRRRAADDDGPDIISLAVIDTGAGIVAERLEKIFEPFETGDTSSTREFGGMGLGL 662

Query: 759 SIVESFINLHGGH-VSISSSDEG 780
           S+        GG  V+ S   EG
Sbjct: 663 SLSRKLAEHMGGRLVATSELGEG 685


>gi|218895391|ref|YP_002443802.1| putative sensor histidine kinase [Bacillus cereus G9842]
 gi|218542923|gb|ACK95317.1| putative sensor histidine kinase [Bacillus cereus G9842]
          Length = 337

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 103 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQ-EYLKILYMKSNNLKH 161

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++V+        +A
Sbjct: 162 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPESTCPIIA 221

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I S ++ NA+ +   G  V ++    + ++   + + G  IP+   ++VF R 
Sbjct: 222 DHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDLQNVFERM 281

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    T     IP
Sbjct: 282 YRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIP 330


>gi|218132088|ref|ZP_03460892.1| hypothetical protein BACEGG_03715 [Bacteroides eggerthii DSM 20697]
 gi|217985738|gb|EEC52079.1| hypothetical protein BACEGG_03715 [Bacteroides eggerthii DSM 20697]
          Length = 479

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 122/217 (56%), Gaps = 4/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ +++G+LN +Q Q  + I  ++  LL
Sbjct: 251 FKELDTAKTTFISTISHELKTPISAILMSLQLLEDNRVGALNEEQEQLSKSIRENADRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            +  ++L++  V+AG +++        +L+    ++   +  + NI+I+V   + K+   
Sbjct: 311 GITGELLNMTQVEAGKLQMIPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKMPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   VI+  AR  G+F+   V++ G  I     +S+F
Sbjct: 371 FVDSEKVAWVLTNLLSNAIRYSKENGRVII-GARQEGNFVELYVQDFGKGIDPRYHQSIF 429

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +R+       + +G GLGLSI + FI  HGG +++ S
Sbjct: 430 DRYF-RVPGTKVQGSGLGLSISKDFIEAHGGTLTVQS 465


>gi|220909777|ref|YP_002485088.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866388|gb|ACL46727.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1548

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 113/229 (49%), Gaps = 17/229 (7%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + IK+ F+  +S+ELRSPL  I+G++ LL+     +  ++Q+  +  I  ++ + + L++
Sbjct: 1162 NRIKDEFLAILSHELRSPLNPILGWSQLLQNRPFDAATTQQA--LTTIERNARLQIQLID 1219

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            D+LD+A +  G + +  S + L  ++     ++ T     +I ++ +   ++G    D  
Sbjct: 1220 DLLDVARILRGKLNMETSPVDLVAVIEAAIDTVKTAALAKSIHLE-LDLAQIGPVCGDAT 1278

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPED 733
            RL QI   +LSNA+ F+ +G  V ++     G+               +V + G  I  D
Sbjct: 1279 RLQQIVWNLLSNAIKFTPQGGRVEVRLGEVEGEAGTDQTVPSPHFAKLTVTDTGKGISPD 1338

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
                +F  F        R+  G+GLGL+IV S +  HGG +   S+ EG
Sbjct: 1339 FLPHIFESFRQEDASTTRKYGGLGLGLAIVRSLVEAHGGTIWADSAGEG 1387


>gi|114848882|gb|ABI83649.1| chromatic acclimation sensor [Synechocystis sp. PCC 6803]
          Length = 753

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 25/276 (9%)

Query: 526 LEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELR 581
           +E+S++P+ N     T ++ V   V   R   E   AL +  E+   K  F    S+E R
Sbjct: 478 VEFSLVPVANKTGFYTHWIAVQRDVTERRRTEEVRLALEREKELSRLKTRFFSMASHEFR 537

Query: 582 SPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL+  +    LL+ S++  L+  K+S+ +  I  S   ++ L++DIL +   +AG ++ 
Sbjct: 538 TPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILIINRAEAGKLEF 597

Query: 641 NYS----TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           N +     ++    + E++ S++ + +        I   +    + D + +  I S +LS
Sbjct: 598 NPNWLDLKLLFQQFIEEIQLSVSDQYY-----FDFICSAQDTKALVDERLVRSILSNLLS 652

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR---- 751
           NA+ +S  G  + +  + D+   IF V + G  I PED  K +F  F    HRG+     
Sbjct: 653 NAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQ-KQIFEPF----HRGKNVRNI 707

Query: 752 RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC 786
            G GLGL + +  ++LH G + + S+ D+G T   C
Sbjct: 708 TGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTIC 743


>gi|70730996|ref|YP_260737.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345295|gb|AAY92901.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 918

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 127/246 (51%), Gaps = 12/246 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +    +VTD   AE++L +      +A+  K  F+  +S+E+R+P+  I+G  ++L+
Sbjct: 407 AAVLCCISDVTDFKVAEQSLLQAKLLSDQANHEKTLFLSTLSHEIRTPMYGILGSLEMLR 466

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T+   +L+++Q  Y+E    +S+ L+  +ND LD++ +++G + L  +      L+ EV 
Sbjct: 467 TT---ALSAQQGDYLEATQQASSALMRTINDTLDMSLIESGRLSLTSAPFSPVRLVEEVA 523

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            S + +     +R+ V  D  +    V D +R+ QI + ++SNA+ F+  G  V+L+   
Sbjct: 524 FSYSARARSKGLRLYVTLDPNVAERVVGDGERIRQILNNLVSNAIKFTESGH-VVLRLHA 582

Query: 715 DNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINL 767
           + G        F V ++G  I  +   ++F  +    +  GQ+  G GLGL+I +    +
Sbjct: 583 EAGPSQAPRLRFQVVDSGPGIAPEFQANLFEPYYRVPSWLGQKAPGTGLGLAICQRLATM 642

Query: 768 HGGHVS 773
             G +S
Sbjct: 643 MQGQLS 648


>gi|228919830|ref|ZP_04083188.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839846|gb|EEM85129.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 896

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 124/251 (49%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    +ND+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNINDMAASMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI--------F 721
           D     F  D +R+ QI   +LSNA  F+  GS  +    ++    + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTETGSVSLHFDSIETTNLSPDMQSISNDWMKI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S   
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|229074319|ref|ZP_04207359.1| hypothetical protein bcere0024_2440 [Bacillus cereus Rock4-18]
 gi|228708806|gb|EEL60939.1| hypothetical protein bcere0024_2440 [Bacillus cereus Rock4-18]
          Length = 281

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 119/229 (51%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ ++ +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 47  KRYEKSRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 105

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++V+        +A
Sbjct: 106 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIDFLPELSKHNIELQVLIPESTCPIIA 165

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I   ++ NA+ +   G TV ++    N ++   + + G  IP+   +++F R 
Sbjct: 166 DHLSLMRIIGNLIKNAIYYGKDGKTVGIELLETNTEYELLIWDKGPGIPKHDLQNIFERM 225

Query: 742 FVSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R    G  GLGLSI ++ +  +GGH+ + S     TT    IP
Sbjct: 226 YRSEQSRTSSFGSSGLGLSISKALVERNGGHIWVESIPWKRTTFGFSIP 274


>gi|222098324|ref|YP_002532381.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221242382|gb|ACM15092.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 364

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 129/245 (52%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  + +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 120 ASEKLKEAVERGDFAESSKDQLIVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 179

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + ++++  
Sbjct: 180 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLEA 237

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DNG+ +  V N G S
Sbjct: 238 RLNVDAHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNGEVVVQVMNYGDS 296

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F + +  R + R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 297 IPEEDLPYLFDMFYTGDKSRSENRGGTGLGLFIAKNIVEQHNGTIS-AESNIVRTMFEVR 355

Query: 788 IPSKE 792
           +P  E
Sbjct: 356 LPKDE 360


>gi|145606054|ref|XP_370199.2| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15]
 gi|145013787|gb|EDJ98428.1| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15]
          Length = 2514

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 19/233 (8%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +A + K+ F+ +VS+ELR+PL  +IG ++LL+ S     N +Q +  + I  S+ +LL +
Sbjct: 1909 EAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSLS---NKEQLEMADSIRVSADLLLTV 1965

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV 681
            +NDILD + ++A  MKL        +++ EV ++++    E   R  +++I +  L   +
Sbjct: 1966 INDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNQEKTRRNNVQIIKEINLPQLL 2025

Query: 682  --ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPED 733
               D  RL Q+   ++ N++ F+ +GS  I   AR      D+    F VK+ G  IP  
Sbjct: 2026 IYGDPIRLHQVLGNLIGNSLKFTDRGSITI--GARVDSETEDSATLSFWVKDTGIGIPPA 2083

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-NLHGGHVSISSSDEGVTT 783
                +F  F        R+  G GLGLSI +S +  +  G +++ S+D GV T
Sbjct: 2084 QLAKLFQPFSQADPSTARKYGGSGLGLSICKSLVETMMKGKITLDSAD-GVGT 2135


>gi|325916716|ref|ZP_08178973.1| Signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537065|gb|EGD08804.1| Signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 726

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 15/247 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +     
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREIIGSVNMILQPQAKGRRLEYGTQ 289

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
           ++D        D   L Q+   ++ NA+ F+  G  V+L+  R +G         F V++
Sbjct: 290 VADDVPDLLKGDTGHLRQVLLNLVGNAVKFTEHGH-VLLRVTRVSGSVDDAVRLRFDVED 348

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG +    +  G +
Sbjct: 349 TGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGRIGFEENKPGGS 407

Query: 783 TINCRIP 789
                +P
Sbjct: 408 VFWFELP 414


>gi|239904902|ref|YP_002951640.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239794765|dbj|BAH73754.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 488

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 166/373 (44%), Gaps = 56/373 (15%)

Query: 425 LETKYNTLV--KVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS------ 475
           +E    T+V  K Q + I D + E V V    GR++++NPA   L     N L       
Sbjct: 105 IEANIATIVAQKTQLQAILDGMREAVMVLDAAGRVRVANPALARLAPIAANPLGRRPIEV 164

Query: 476 -PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIP 532
            P   ++     C R         L AA     + E  +   TLE       V E S++ 
Sbjct: 165 IPSPELQ---LACDR---------LLAADPAGPEAESAAEAVTLEARFGPGRVYEVSLVR 212

Query: 533 LPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           LP      A  +L F +V+++              RK   ++  F  +V++ELR+PLT+I
Sbjct: 213 LPGRDGAEAGAVLVFHDVSET--------------RKLSRVRRDFAANVTHELRTPLTSI 258

Query: 588 IGFTDLLKTSKLGS---LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL-NYS 643
            G+ + L    LG+   L +++ +++E I  ++  +  +V+DIL+LA ++ G     +  
Sbjct: 259 KGYAETL----LGAAPELAAEKRRFLEVILKNANHMSKMVDDILNLARLEDGQGPAPDAR 314

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
                 L + V++            ++ + +  L +   D+ +L Q++  +L NA+ FS 
Sbjct: 315 AEAGAALADAVRECEPLAQARALELVRALPEAGL-AVACDQGQLAQVWRNLLENAIRFSP 373

Query: 704 KGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRG-VGLGLS 759
           +   + L AA   D G    SV + G  IP +  + VF RF     HR +  G  GLGL+
Sbjct: 374 ESGRIELAAAPDPDRGLVRCSVLDQGPGIPPEERERVFERFYRVERHRSKTPGSTGLGLA 433

Query: 760 IVESFINLHGGHV 772
           IV   +  HGG V
Sbjct: 434 IVRHIVERHGGRV 446


>gi|119509388|ref|ZP_01628537.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
 gi|119466002|gb|EAW46890.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
          Length = 1508

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 10/220 (4%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K++F+ ++S+E+R+P+  ++G T LL  +   +LN +Q  + E I  S   LL L+
Sbjct: 880  ASQAKSAFLANMSHEIRTPMNAVLGMTGLLLET---NLNREQRDFAETIRISGDALLCLI 936

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVAD 683
            N+ILDL+ ++AG M L      L+  + EV + +A + H+  + I  +I          D
Sbjct: 937  NEILDLSKLEAGEMFLETLDFDLSTCVEEVLELLAPQAHKQELEIAGLIHRNVPVHLQGD 996

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              RL QI   ++ NA+ F+S G  V+    L    +     FSV + G  I  +    +F
Sbjct: 997  ASRLRQILMNLVGNAIKFTSTGEIVVRAELLSQTPNTVTIHFSVTDTGIGISSEDQNKLF 1056

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              F        R+  G GLGL+I +  ++L GG + ++S 
Sbjct: 1057 QPFTQVDASITRKYGGTGLGLAISQQLVSLMGGTIGVNSQ 1096


>gi|219847489|ref|YP_002461922.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541748|gb|ACL23486.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 527

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 16/241 (6%)

Query: 559 NEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYIS 614
             ALR A+E    +  F+   S+ELR+PLT I    ++ L+ +K    +  Q + +  + 
Sbjct: 293 GRALRPAEEAWTRQLRFISSASHELRAPLTLIRASAEVALRNAK----DEDQRELLTDVL 348

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + S  +  LV+D+L L+ +D+G + L    I LND L ++ + ++    E  I I +   
Sbjct: 349 SESDHMRRLVDDLLTLSRLDSGSLTLQRQPITLNDFLADLHRHVSRLGEERGITITLAQ- 407

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              G+ +AD  RL QI   ++ NA+ ++  G T+ L A         SV++ G  I  + 
Sbjct: 408 -ARGTVIADPDRLRQILLILIDNALRYTPTGGTITLNAELAGKQVRISVRDTGCGITPEH 466

Query: 735 CKSVFNRFVSNAHRGQRRG-----VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F RF   A + + R       GLGLSI +  +  HGG + I S     T +   IP
Sbjct: 467 LPHLFERFY-RADQARNRSSNTNNAGLGLSIAKGLVEAHGGTIGIESEVNKGTLVWFTIP 525

Query: 790 S 790
           +
Sbjct: 526 T 526


>gi|288942314|ref|YP_003444554.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897686|gb|ADC63522.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 894

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 10/231 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E  +    A+  K+ F+  +S+E+R+P+  ++G  +LL  +    L+++Q ++ + I
Sbjct: 358 ALAEARDHAEAANRAKSDFLATMSHEIRTPMNAVLGMAELLLAT---DLDAQQQRFAQTI 414

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+++NDILD++ ++AG + L         L+ E  Q+ +       +R+ V  
Sbjct: 415 HRSGGALLDIINDILDVSKIEAGKLTLAPHDFDPRLLIEETAQTFSESASAKGLRLTVRL 474

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGS 728
              L   V  D  RL QI   ++ NA+ F+  G    S  +   A +       V++ GS
Sbjct: 475 PRDLPGLVHGDSTRLRQILFNLIGNALKFTEHGEIRVSASLTIHADERMTLAIEVRDTGS 534

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            I  +    +F  F        RR  G GLGL+I +   +L  G + + S+
Sbjct: 535 GIAPEFQAEIFEAFAQGDGSTTRRHGGTGLGLAISQRLAHLMDGSIRVEST 585


>gi|255284238|ref|ZP_05348793.1| sensor protein VanS [Bryantella formatexigens DSM 14469]
 gi|255265191|gb|EET58396.1| sensor protein VanS [Bryantella formatexigens DSM 14469]
          Length = 399

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  K  A  ++++ KN  V +++++L++PLT+II +  +L   K      +Q +Y+    
Sbjct: 138 LKRKERATIESEQKKNDLVVYLAHDLKTPLTSIIAYLTMLDGQKNMPEEDRQ-KYIHVSL 196

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L+N+  ++   +   + L    + L+ +L ++       +    +  +V +D
Sbjct: 197 EKANRLGELINEFFEITRFNLQDIVLEKVQLDLSVMLEQLADESYAVLAAKYMTCRVDAD 256

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +     D  +L ++F  +L NA+ +S   + + ++A R   D I +  N G  IPE  
Sbjct: 257 ENM-IVDGDPDKLARVFENLLRNAIAYSYSDTEIAIEARRKEDDIIITFTNQGHQIPEQK 315

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            K++F +F  V NA   Q  G GLGLSI +  + LHGG +  + SD   TT    +P+
Sbjct: 316 LKAIFEKFYRVDNARSSQTGGSGLGLSIAKQIVELHGGKIE-AVSDRYYTTFTVTLPA 372


>gi|197103756|ref|YP_002129133.1| sensory box histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477176|gb|ACG76704.1| sensory box histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 788

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 5/209 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PL  ++G   +LK+ +L   +  +S   E +S    +L  L+ND++D +
Sbjct: 415 FLANMSHEIRTPLNGVMGVLHILKSEQL--TDEGRSLLDEALSCGQ-MLAELLNDVIDFS 471

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG ++L    +    L+  V + +  +     +++ V +D ++G   +D  RL Q  
Sbjct: 472 KIEAGRLELACEPVDPKALVEGVARLLKPQAQAKGLQLIVDADARMGWVRSDPVRLRQAL 531

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             ++ NA+ F+ KG  VI     D G   F V++ G  IPE     +F RF        R
Sbjct: 532 FNLVGNAVKFTEKGHVVIRCRLADAGVLRFEVEDTGVGIPEAAQARLFQRFNQADASTTR 591

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSD 778
           +  G GLGL+I +    +  G V  +S++
Sbjct: 592 KFGGSGLGLAITKRLAEMMNGQVGFTSAE 620


>gi|206969733|ref|ZP_03230687.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206735421|gb|EDZ52589.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 368

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 128/245 (52%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 124 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 183

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + +++++ 
Sbjct: 184 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLQA 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DNG+ +  V N G S
Sbjct: 242 RLNIDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNGEVVVQVMNYGDS 300

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 301 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTMFEVR 359

Query: 788 IPSKE 792
           +P  E
Sbjct: 360 LPKDE 364


>gi|70732514|ref|YP_262277.1| bacteriophytochrome histidine kinase [Pseudomonas fluorescens Pf-5]
 gi|68346813|gb|AAY94419.1| bacteriophytochrome histidine kinase [Pseudomonas fluorescens Pf-5]
          Length = 746

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 9/227 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQ-SQY 609
           R +  + +A+R  DE+    V  VS++LR+P+T I     +++   S  G   S++ S  
Sbjct: 509 RQVLREQQAVRARDEL----VAVVSHDLRNPMTVISMLCGMMQKAFSSDGPHTSRRISSA 564

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +++ + NL+ D+LD + ++AG   +    + ++ +  E    +A    +  I I
Sbjct: 565 IDTMQQAASRMNNLLEDLLDTSKIEAGRYSIAPQPLDVSQMFEEAYSLLAPLALDKAIDI 624

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              ++  L    AD +RL Q+ S ++ NA+ F+ K   V + A  D    +FSV+++G  
Sbjct: 625 SFHAEPDL-RINADPERLFQVLSNLVGNAIKFTPKQGKVGVVAMSDGEQIVFSVRDSGEG 683

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP D    +F+R+ +    G   G GLGL I +  I+ HGG +   S
Sbjct: 684 IPTDQLPFIFDRYWT-MKEGNPNGTGLGLYITQGIIHAHGGKIEAHS 729


>gi|225028585|ref|ZP_03717777.1| hypothetical protein EUBHAL_02864 [Eubacterium hallii DSM 3353]
 gi|224954067|gb|EEG35276.1| hypothetical protein EUBHAL_02864 [Eubacterium hallii DSM 3353]
          Length = 542

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 135/257 (52%), Gaps = 15/257 (5%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           DSV EYSI+     +  L   N+ +++  E     KN  L K ++++   ++ +S++LR+
Sbjct: 275 DSV-EYSILLSVVNECALAMENLRNAIEKE-----KNAVLAKNEQLRADLLRAISHDLRT 328

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQ--YVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           PL +I G  D+L  +    L+SK  Q  YV+ I   S  L+ +V ++L +  ++ G +K 
Sbjct: 329 PLCSISGNADMLLNNG-ACLDSKTKQQIYVD-IYDDSEWLIGVVENLLSITRLNDGRLKF 386

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            ++  +L++++ E  + I+ K  E  I  K     +L     D Q ++Q+   ++ NA+ 
Sbjct: 387 KFTDQLLDEVIAESLRHISRKHDEYTIVTKC---EELILVRMDVQLIIQVLVNLIDNAIK 443

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           ++ KGS + ++  + NG     V++NG  I ++M   +F  F +        +R +GLGL
Sbjct: 444 YTPKGSKICIRGMKCNGKAQICVEDNGPGIADEMKPYIFEMFYTGKSTIADSQRSLGLGL 503

Query: 759 SIVESFINLHGGHVSIS 775
           S+ +S I  H G + ++
Sbjct: 504 SLCQSIIEAHDGRLLLT 520


>gi|332141805|ref|YP_004427543.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551827|gb|AEA98545.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1351

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 14/227 (6%)

Query: 561  ALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            AL KA+E   +K+ F+ ++S+E+R+P+  +IG  DLLK S    L  +Q Q V   S+S+
Sbjct: 817  ALEKAEEATKLKSEFLANMSHEIRTPMNGVIGMLDLLKKS---DLTVEQGQRVNIASSSA 873

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
            + LL L+NDILD + ++A  +++      L  L+  + QSIA       + + V +S   
Sbjct: 874  SSLLVLINDILDFSKIEANKLEIESVDFDLRSLIETLAQSIAHTAQLKGLAVIVDVSKVD 933

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIF--SVKNNGSSIP 731
                 +D  R+ QI + +LSNA+ F+ +G    T  L  +++ G ++   +VK+ G  I 
Sbjct: 934  ASKVNSDPTRIQQILTNLLSNAVKFTEQGELSITAALLPSKNEGQYVLRCAVKDTGIGIE 993

Query: 732  EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  +F  F        RR  G GLGLSI +    L GG V  SS
Sbjct: 994  PRKLAQLFEAFTQVDASTTRRYGGTGLGLSITKKLCELLGGDVKASS 1040


>gi|320160305|ref|YP_004173529.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319994158|dbj|BAJ62929.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 791

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR P++ ++G+TDLL    +G L   Q +++E +  ++  +  L++D++ L  ++ G +
Sbjct: 565 ELRRPMSAVMGYTDLLLAETVGILGGLQRKFLEKVRNATEQMRALLDDLIQLTLLNRGPL 624

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L   T+ L+ +L++V   + + + E  I+I +     L    ADR  L QI  ++L NA
Sbjct: 625 ELVQQTVELDQVLDDVLGDMGSLLSEKEIQISMELPEHLPPVYADRDALHQILIELLKNA 684

Query: 699 MDFSSKGSTVILKA---ARDNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           +  +     + LKA     D+  F +  + ++G  IP      VF+        G     
Sbjct: 685 IQVTPPRYEIRLKAILQQEDSSHFAVLQITDHGGGIPSKDLPKVFSHRKDAVLPGVADS- 743

Query: 755 GLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
           G+GLSI ++ +  HGG + + S+ ++G TT +  +P +
Sbjct: 744 GIGLSIAKTLVEAHGGRIWVESNMEQGSTTFSILLPLR 781


>gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1034

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 121/241 (50%), Gaps = 11/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++  R E  L    EA   A+  K+ F+ +VS+ELR+P+  I+G T+L+  ++   L 
Sbjct: 371 DISERKRLEGELLVAKEAAEAANRAKDEFLANVSHELRTPMNAILGMTELVLETE---LR 427

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q Q +  + +++  LL ++ND+LD A ++AG ++L+ +   L  ++ +  +++A + H
Sbjct: 428 EDQRQCLATVKSAADNLLGILNDLLDFAKIEAGKLELDPTEFSLRAVVGDTLRALAARAH 487

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--- 719
              +  +  +      + V D  RL Q+   ++ NA+ F+  G  V+     D  D    
Sbjct: 488 RAGLELVGDVHPAVPDALVGDPGRLRQVLFNLIGNAIKFTPAGEVVVGVEPADPSDIGGS 547

Query: 720 --IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F+V++ G  I  +    +F+ F        RR  G GLGL+I    + L GG + + 
Sbjct: 548 AVRFTVRDTGIGIKPEKLDRIFHAFEQEDTSTTRRYGGTGLGLTISGRLVALMGGAIGVE 607

Query: 776 S 776
           S
Sbjct: 608 S 608


>gi|158520998|ref|YP_001528868.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
            Hxd3]
 gi|158509824|gb|ABW66791.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
            Hxd3]
          Length = 1791

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 10/212 (4%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+P+  +IG   +        L  +Q +Y E + +S+  LL ++ND+LD +
Sbjct: 1422 FLANMSHEIRTPMNGVIG---MTDLLLDTDLTEEQLEYAESVRSSAESLLVIINDVLDFS 1478

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
             ++AG +KL      L  LL EV  ++A +     IR  VI   ++ S +  D  RL QI
Sbjct: 1479 KIEAGKLKLEEIDFDLEKLLKEVNDTMAPRARRKRIRHDVILKEEVPSLLKGDPVRLRQI 1538

Query: 691  FSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VS 744
               +  NA+ F+  GS  +  +A    D     +F V + G  I  +  +++F  F  V 
Sbjct: 1539 LFNLCENAVKFTEAGSVKVAVSAPHQTDTTATLLFEVTDTGIGIAPEHHQAIFESFSQVD 1598

Query: 745  NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +   Q  G GLGL+I +  ++L  G + ++S
Sbjct: 1599 ASTTRQYGGTGLGLAITKRLVSLLDGEIGVTS 1630


>gi|71278636|ref|YP_270772.1| hybrid sensory histidine kinase BarA [Colwellia psychrerythraea
           34H]
 gi|71144376|gb|AAZ24849.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 948

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A+ +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L   Q  Y++ I  S+  LL
Sbjct: 298 QEANRVKSEFLANMSHELRTPLNGVIGFTRQVLKTP----LTENQRDYLQTIDRSANNLL 353

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + +DAG M        L + ++E    +A   H+ NI + +    +L  S 
Sbjct: 354 TIINDILDFSKLDAGKMVTENIPFSLRESIDETLTLLAPSAHKKNIELSINLPQELPDSL 413

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++SNA+ F+ +GS  +     + +++N      V + G  +  +  +
Sbjct: 414 VGDTMRIKQIITNLVSNAIKFTPQGSVAVDITSEEISQNNIKLKVIVTDTGIGMTTNQQR 473

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++F+ F        R   G GLGL I +       G +  SS
Sbjct: 474 TIFDAFTQADQSITRLYGGTGLGLVICQRLAQEMNGDIGFSS 515


>gi|52079393|ref|YP_078184.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52784753|ref|YP_090582.1| hypothetical protein BLi00981 [Bacillus licheniformis ATCC 14580]
 gi|319646826|ref|ZP_08001055.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52002604|gb|AAU22546.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347255|gb|AAU39889.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391414|gb|EFV72212.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 674

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 198/449 (44%), Gaps = 48/449 (10%)

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-----QTLHVIVTSNPRGGTIW 414
           R A+KL E+  ++ + +++      ++T    + +P+G     + +    + N   G + 
Sbjct: 258 RPADKLTERFKYEGYADDLRRTLYENKTVVKEFEMPDGGWYAVKMIPYYTSGNMVEGIVV 317

Query: 415 MFENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            F N+T     E K  N  + +  + ID     + +   DG +  +N  F  ++   ++ 
Sbjct: 318 TFTNVT-----ELKMTNEALHISSQAIDQSPANILITSVDGSVTYANKRFCRMFGKHQDD 372

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL----ELLSDSVLEYS 529
           +  G    N+     ++++  D    +  ++     E+K   G L    E   D   + S
Sbjct: 373 IIGG----NVFDIYRKHFHCEDLTRFWKRVL-----EKKPWSGELNYQDEEQQDRWEQIS 423

Query: 530 IIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++P+ ++     Q ML   ++T+  R+E+ L  K+E L    ++       +++E+R+PL
Sbjct: 424 LVPVEDSAGNVQQVMLISEDITNQKRSEKMLM-KSEMLSAVGQLAAG----IAHEIRNPL 478

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T++ GF  L+  SK       Q  Y E + +    L  ++N+ L LA   +      +  
Sbjct: 479 TSLKGFLQLMIQSK-----KYQKDYAEVMMSEFIRLEAIINEFLVLAKTKSN----TFDP 529

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + +N ++ +V   + ++   NN+RI+    G L   +A    L Q+F  IL NA++    
Sbjct: 530 VQVNSIVEDVCMVLESQAVLNNVRIEKQLSGDLPEILAVSNELKQVFINILKNAIEAMED 589

Query: 705 GSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               I   +    D +F + ++ G  I +++ + +   F +     + +G GLGL +   
Sbjct: 590 AEGFITIRSYFEKDSVFITFEDQGKGISKEVLEKLGEPFYTT----KEKGTGLGLMVTFK 645

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792
            I  HGG +   S +   T +  ++P KE
Sbjct: 646 IIENHGGSIHFESEEGKGTIVKLKLPIKE 674


>gi|21232279|ref|NP_638196.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66767587|ref|YP_242349.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|188990703|ref|YP_001902713.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris
            str. B100]
 gi|21114044|gb|AAM42120.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66572919|gb|AAY48329.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|167732463|emb|CAP50657.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1186

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 12/237 (5%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A + K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 787  MRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 843

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I ++   LL LVND LDLA ++AG + L+     L  L+ +V   +     +  +
Sbjct: 844  GYASAIQSAGKHLLRLVNDALDLARIEAGKLALDDRDFDLRQLIRQVVDLVRPSAEQKQL 903

Query: 668  RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVK 724
              +   D  L  +   D  R+ QI   +L NA+ F+ +G     +L      G     V 
Sbjct: 904  AFECHLDESLPRALHGDANRVQQILLNLLFNAVKFTERGQVRLRVLPLQAGGGGIRVEVS 963

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRG----QRRGVGLGLSIVESFINLHGGHVSISSS 777
            + G  + E+    +F RF   A  G    +  G GLGL+I        GG V +SS+
Sbjct: 964  DTGPGMSEEQRGRLFQRF-EQAEGGRTTTRHGGSGLGLAICRELAAAMGGSVGVSSA 1019


>gi|163938275|ref|YP_001643159.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163860472|gb|ABY41531.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 337

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 3/238 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +     RK+ E +   + ++S+++R+PLT+IIG+ D LK     S   KQ +Y+E +
Sbjct: 94  ALEKGQIEARKSQEARKQLLSNISHDIRTPLTSIIGYIDALKDDVAASEVEKQ-EYLEIL 152

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L +LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++V+ 
Sbjct: 153 YKKSNDLKHLVDEIFNMAKLDADEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLI 212

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  +AD   L++I   ++ NA+     G  V ++    N ++   + + G  IP+ 
Sbjct: 213 PESTSPIIADHLSLIRIIGNLIKNAIHHGKAGKIVGVELLETNTEYEILIWDKGPGIPKH 272

Query: 734 MCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++VF R + S   R     G GLGLSI ++ +  +GG + + S     TT    +P
Sbjct: 273 DLQNVFKRMYRSEQSRNPSYGGSGLGLSISKALVEKNGGRIWVDSIPWERTTFGFSVP 330


>gi|237709891|ref|ZP_04540372.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
 gi|237725439|ref|ZP_04555920.1| two-component system histidine kinase [Bacteroides sp. D4]
 gi|229436126|gb|EEO46203.1| two-component system histidine kinase [Bacteroides dorei 5_1_36/D4]
 gi|229455984|gb|EEO61705.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
          Length = 494

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 129/247 (52%), Gaps = 5/247 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ +   AE  L    +   ++D++K++F+ ++S+E+R+PL  IIGF++LL + ++    
Sbjct: 248 SIQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSEEMDGEE 307

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           SK  ++V  I+ +   LL L++DI+D++ +++  ++       L+ +L+E+ Q  +  + 
Sbjct: 308 SK--EFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQILSEIYQCQSLNI- 364

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            + I  ++    +    + D  R  Q+ + +++NA+ F+  G   +      NG     V
Sbjct: 365 PSKIEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMYGHITLGSKILQNGTIDIYV 424

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           K+ G  +P++    +F RF        + G GLGLSI ++ I    G ++++S +   + 
Sbjct: 425 KDTGMGMPQEKLAHIFERFYK--MDSFKPGAGLGLSICKTIIEHMQGEINVTSIEGKGSN 482

Query: 784 INCRIPS 790
               IP+
Sbjct: 483 FTITIPT 489


>gi|228955129|ref|ZP_04117143.1| hypothetical protein bthur0006_44930 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072358|ref|ZP_04205562.1| hypothetical protein bcere0025_45200 [Bacillus cereus F65185]
 gi|229082106|ref|ZP_04214583.1| hypothetical protein bcere0023_47300 [Bacillus cereus Rock4-2]
 gi|229181170|ref|ZP_04308502.1| hypothetical protein bcere0005_45130 [Bacillus cereus 172560W]
 gi|228602361|gb|EEK59850.1| hypothetical protein bcere0005_45130 [Bacillus cereus 172560W]
 gi|228701202|gb|EEL53711.1| hypothetical protein bcere0023_47300 [Bacillus cereus Rock4-2]
 gi|228710783|gb|EEL62754.1| hypothetical protein bcere0025_45200 [Bacillus cereus F65185]
 gi|228804540|gb|EEM51145.1| hypothetical protein bthur0006_44930 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 365

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 128/245 (52%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 121 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 180

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + +++++ 
Sbjct: 181 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLQA 238

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DNG+ +  V N G S
Sbjct: 239 RLNIDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNGEVVVQVMNYGDS 297

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 298 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTMFEVR 356

Query: 788 IPSKE 792
           +P  E
Sbjct: 357 LPKDE 361


>gi|219847438|ref|YP_002461871.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541697|gb|ACL23435.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 554

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 11/225 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PL  I+G+  LL   K+  +      Y+E I  S   LL+L++++LD A
Sbjct: 311 FLATMSHELRTPLNAILGYAQLLHIQKV--VPDSHQPYLERILTSGRHLLSLISNVLDFA 368

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++ G + L+Y  + +  L+ EV          ++ RI+     ++G    D +RL Q+ 
Sbjct: 369 RIEQGALDLDYRPVEVAALVEEVVSMTLPLAQRHHNRIETDCPPEIGVIETDGRRLRQVL 428

Query: 692 SKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
             +LSNA  F+  G      T I    RD     F+V + G  IP D    +F  F  V 
Sbjct: 429 INLLSNAAKFTEDGLIRLEVTAIQHNGRDG--LRFAVHDTGIGIPPDKQHKLFQPFSQVD 486

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   +  G GLGL++ +  +   GG +++ S+    +T +  IP
Sbjct: 487 DSVTRRYEGTGLGLALSKQIVEALGGTITVQSTVGVGSTFSVWIP 531


>gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1223

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 128/272 (47%), Gaps = 21/272 (7%)

Query: 524  SVLEYSIIPLPNA---------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            +V +   +PLP             ML   +VT   + E  +    +      E+K+ FV 
Sbjct: 793  AVFDVVALPLPGETHRTEGVAHDVMLLLQDVTSRKQWEEQMRASRDEAAAMSELKSQFVA 852

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            ++S+E+R+PL+ I+G  D+  T++     +    Y   +   +  LL ++ND+LD + ++
Sbjct: 853  NISHEMRTPLSGILGIADVALTTEGNP--ALLRNYFSMVQNVAEGLLGVINDLLDFSRLE 910

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSK 693
            AG M L+     L+  + +    +A +     + +++ + +G   +   D  RL QI   
Sbjct: 911  AGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQILVN 970

Query: 694  ILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVS--N 745
            ++ NA+ F+ +G TV +  +  +G        +F++++ G  IP +    +F  F     
Sbjct: 971  LVGNAVKFTPQG-TVHVDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQADG 1029

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            ++  Q  G GLGL+I    + L GG + + S+
Sbjct: 1030 SYSRQHTGSGLGLAISRHLVELQGGDIGVQST 1061


>gi|52081411|ref|YP_080202.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52786787|ref|YP_092616.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|319647319|ref|ZP_08001541.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52004622|gb|AAU24564.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52349289|gb|AAU41923.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|317390666|gb|EFV71471.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 581

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 7/230 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           ++ +E++  FV +VS+EL++P+T+I GFT+ L     G++N +++  Q++  I   S+ L
Sbjct: 350 KQLEEMRKDFVANVSHELKTPITSIKGFTETLLD---GAMNERETLLQFLSIILKESSRL 406

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+LDL+ ++     LN     + ++L E++  +  K  E  I + +    K    
Sbjct: 407 QTLIQDLLDLSKIEQQNFTLNIQNCNIGEILAEIEMLLKNKAEEKGITLTLEKPDKPAVA 466

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL QIF  +++NA+ ++ +  +V + A          V++ G  I +     +F 
Sbjct: 467 SGDPHRLKQIFLNLVNNALTYTPEDGSVTISADVLEDAVQVKVRDTGIGIKQSEIPRIFE 526

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           RF  +         G GLGL+IV+  +  H G + + S     T    R+
Sbjct: 527 RFYRIDKDRSRNSGGTGLGLAIVKHLVEAHQGEIDVESERGKGTEFTVRL 576


>gi|301166797|emb|CBW26374.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 1089

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 12/252 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+ V  ++ L    E    ++E K+ F+ ++S+E+R+P+  I+G   LL  S    L  +
Sbjct: 693 TNDVIIQKELVIAKEMAEASEEAKSEFLANMSHEIRTPMNGILGMISLLSES---DLTKE 749

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   +E I +S  IL+ ++NDILD++ +DAG  +L+     + + +       +T   E 
Sbjct: 750 QMDMLETIQSSGDILMTILNDILDISKLDAGKYELDIRDFDIRNCIENTTFLFSTLASEK 809

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI 720
            I +       +  F+  D  R+ QI    LSNA+ F+ +G   I    +K +  +   +
Sbjct: 810 GINLTSTISSVVPLFLKGDVTRIRQILVNFLSNAIKFTERGEVKIEVGAIKKSDRDVSLV 869

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
            SV + G  I  D  +++F  F S A     R   G GLGLSI    I +  G V + S 
Sbjct: 870 ISVIDTGIGIHSDAQENIFEAF-SQADSSTTRVYGGTGLGLSICSKLIEIMDGEVKLESE 928

Query: 778 DEGVTTINCRIP 789
               T I   +P
Sbjct: 929 PGKGTNITFSLP 940


>gi|288941471|ref|YP_003443711.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896843|gb|ADC62679.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 904

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 120/241 (49%), Gaps = 11/241 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+ L++ D++K+ F+   S+ELR+PL  I G+ DL++  + G +++ Q   ++ +S ++T
Sbjct: 495 NQELQQLDQLKSKFISMASHELRTPLIAIQGYVDLIREGRGGEISAAQRTMLDTVSRNAT 554

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  +V+++LD++ ++   + L    + L  +++E+ +     +      + +     L 
Sbjct: 555 RLARIVSELLDISRIEENKLVLERVPVSLGQIVSEITEEQQPYLESRRHALTLEIADALP 614

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKS 737
               D  R+ Q+   +L NA+ ++  G  + ++   +       V + G  I PED+ K 
Sbjct: 615 RVDGDPDRISQVVINLLGNAIKYTPDGGRIHIRVYPEPDRVHLEVTDTGIGIKPEDIGK- 673

Query: 738 VFNRFVS----NAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F RF +      HR  +      G GLGLSIV+  +  H G + + S     +T + + 
Sbjct: 674 LFKRFSTLGDVTKHRTGKNEFLAGGTGLGLSIVQGIVQAHAGKIWVDSEYGRGSTFHVQW 733

Query: 789 P 789
           P
Sbjct: 734 P 734


>gi|228906048|ref|ZP_04069938.1| hypothetical protein bthur0013_2330 [Bacillus thuringiensis IBL
           200]
 gi|228853595|gb|EEM98362.1| hypothetical protein bthur0013_2330 [Bacillus thuringiensis IBL
           200]
          Length = 314

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQ-EYLKILYIKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++V+        +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPESTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I S ++ NA+ +   G  V ++    + ++   + + G  IP+   ++VF R 
Sbjct: 199 DHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDLQNVFERM 258

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    T     IP
Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIP 307


>gi|193215238|ref|YP_001996437.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088715|gb|ACF13990.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 701

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R  + IK   +  + +ELRSPL  IIGF+DL+ + +    +  + QY+E I  S + L +
Sbjct: 467 RDLERIKLETLGIIVHELRSPLMGIIGFSDLMLSQEYE--HDTRKQYLEAIYKSGSKLSD 524

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+  L++  +++G M +  S + L  ++  +  S+  +  + +++     + ++   +A
Sbjct: 525 LVDRFLNVLRMESGQMDILTSPVQLIPIVESLVLSLDAQAQKKSVKFVCTYESEIPEILA 584

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
             + + +    +++NA+ +  K  TV +   R++   IFS+ + G  IP +    +F +F
Sbjct: 585 SEELMREALQNLMTNAIKYGGKNRTVEITLKREDNFVIFSITDYGYGIPPEAQDKLFTKF 644

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             V N      +G GLGL+ V+  +  H G +++ S  E    I C
Sbjct: 645 YRVENEKTKNEKGTGLGLAYVKEIVTRHHGKITLESRPE----IGC 686


>gi|33341110|gb|AAQ15121.1|AF350320_1 putative ethylene receptor ERS1 [Lactuca sativa]
          Length = 639

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 127/267 (47%), Gaps = 34/267 (12%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L ++N AL  A +        +N F+  +++E+R+P+  II  +        
Sbjct: 317 ESMRARDQLMDQNFALNVARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALS---SLLLE 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L   Q   +E I  SS +L  LVND+LDL+ ++ G ++L      L+ LL EV + I 
Sbjct: 374 TELTPDQRAMIETILKSSNLLATLVNDVLDLSRLEDGSLELESEVFNLHGLLREVVRLIN 433

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                 N  + +  D  L +F V D +RL+QI   ++ NA+ F +KG  V ++A+  N +
Sbjct: 434 PIASVKNTSMTLNCDVDLPNFGVGDEKRLMQIILNVVGNAVKF-TKGGHVSIQASVLNPE 492

Query: 719 F--------------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           +                    +  VK++GS I +     +F +F        R   G GL
Sbjct: 493 YLQEWQTPEFCPTFTQGLFYLLVQVKDSGSGIKQQDIPHIFTKFSEPRSASNRSGDGAGL 552

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTT 783
           GL+I + F+++ GGH+ I S   G  T
Sbjct: 553 GLAICKRFVDMMGGHIWIESGGLGKGT 579


>gi|299069566|emb|CBJ40838.1| sensory histidine kinase in two-component regulatory system with
           BaeR [Ralstonia solanacearum CMR15]
          Length = 519

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 113/240 (47%), Gaps = 17/240 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYISA 615
           E L    +++      +S+ELR+PL  + G      D ++     SL S Q++       
Sbjct: 276 ETLEANQKMRRQLTADISHELRTPLAVLRGELEALEDGVRALTPASLTSLQAEV------ 329

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---I 672
               L  L++D+ +L+  D G +  +  +I L D +    Q   +++ + +I +++    
Sbjct: 330 --GTLSKLIDDLYELSLADVGALAFHMESIDLADTVCSAAQGFTSRLMDKHIALQLDLPT 387

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +  +   D QRL Q+   +L N + ++  G T+ +   R    +   V+++   +PE
Sbjct: 388 GPSRDAAIQGDPQRLRQLMQNLLENTLRYTDAGGTLRIHVHRAGAWWCLDVQDSAPGVPE 447

Query: 733 DMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            M   VF+R F ++  RG+ + G GLGLS+ ++ +  HGG +    S  G   I  R+P+
Sbjct: 448 AMLPRVFDRLFRADPSRGRAQGGAGLGLSLCQTIVQTHGGTIEARPSPLGGLWIAIRLPA 507


>gi|229010405|ref|ZP_04167609.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
 gi|228750825|gb|EEM00647.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
          Length = 896

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 130/260 (50%), Gaps = 15/260 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD    +  L EK   + ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  
Sbjct: 473 TDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDD 532

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +    I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + 
Sbjct: 533 EIELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAANMQQNFLHIAAQK 592

Query: 666 NIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD-- 718
           N+ + +  SD     F  D +R+ QI   +LSNA  F+ KGS  +    ++    + D  
Sbjct: 593 NVELTIADSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQ 652

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                    SVK+ G  I  +  + +F  F        R+  G GLGLSI + F  L GG
Sbjct: 653 SISKDWMTISVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGG 712

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +++ S+    +T    IP+
Sbjct: 713 WITLESNLGEGSTFTVYIPN 732


>gi|330809799|ref|YP_004354261.1| sensor/response regulator hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377907|gb|AEA69257.1| putative sensor/response regulator hybrid [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 770

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 5/200 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD   AE AL    E    A   K+ F+  +S+ELR+PL  I+GF  LL         
Sbjct: 380 DITDRRAAEIALRTAREEAESASRAKSEFLSRMSHELRTPLNAILGFAQLLDMDS----T 435

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q   V +I  +   LL L+N++LD+A ++AG + LN   I L+ +L+E    ++    
Sbjct: 436 AGQRPQVSHILRAGQHLLALINEVLDIARIEAGRLPLNIEPIALSTVLHEALTLVSPMAA 495

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  I +  +      S V ADRQRL+Q+   +LSNA+ ++  G  V ++ +        +
Sbjct: 496 DAGIHLAELPALPDDSGVLADRQRLVQVLLNLLSNAIKYNRPGGEVRIEVSVQAHQVSIA 555

Query: 723 VKNNGSSIPEDMCKSVFNRF 742
           V + G  I  +    +F  F
Sbjct: 556 VNDTGHGIAPEQLDQLFKPF 575


>gi|228900486|ref|ZP_04064712.1| hypothetical protein bthur0014_16930 [Bacillus thuringiensis IBL
           4222]
 gi|228859163|gb|EEN03597.1| hypothetical protein bthur0014_16930 [Bacillus thuringiensis IBL
           4222]
          Length = 291

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 129/245 (52%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  +Y
Sbjct: 45  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEEY 103

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+   I +  L+ ++      ++ + N+  
Sbjct: 104 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEIDMKALIEQIMIDFVPQLDDANMSF 163

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + SD  L   V D   ++++F  ++ N++ +   G  + +  +    +    +KN G  
Sbjct: 164 YIKSDEVLHVEV-DVALIVRLFENVIGNSIMYGKDGKEIAIGISNKTMNVEVEIKNFGQC 222

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S   LH G +++ S+D+  T  
Sbjct: 223 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGIGLAISKSIAQLHQGDITVRSNDKE-TVF 278

Query: 785 NCRIP 789
             ++P
Sbjct: 279 TVKLP 283


>gi|307150206|ref|YP_003885590.1| histidine kinase [Cyanothece sp. PCC 7822]
 gi|306980434|gb|ADN12315.1| histidine kinase [Cyanothece sp. PCC 7822]
          Length = 376

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 10/281 (3%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           ++L   V E  +IP+   + +     +  S R    L   NE L+  +  K+ F+   S+
Sbjct: 89  DVLPAQVDEALVIPIEKVELLGRLKALLRSRRLTLELKAANEQLQHLNAFKSRFLSMASH 148

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +LRSPL+ I     LL+         KQ + ++ + +    +  L+NDI+ +   + G +
Sbjct: 149 DLRSPLSAISASAQLLQNHYHKLSRDKQERILQLMHSGVKRMTQLLNDIVIINQAEEGKL 208

Query: 639 KLNYSTIVLNDLLNE-VKQSIATKMHENNIRIKVISDGKLGSF---------VADRQRLL 688
             + S   L+    E V+Q        + I    ++D K   F           D+  L 
Sbjct: 209 TFHPSFFNLDQFCQELVEQFQMASGSRHQIEFMSVTDSKTDHFKLFNSDFKVYMDKNLLY 268

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            IFS +L NA+ +S  G  +  K        I  +K+ G  IP +  + +F  FV   + 
Sbjct: 269 HIFSNLLDNAIKYSPDGGIISCKLIYQEHQVICQIKDPGIGIPLEKQQKLFEAFVRGDNV 328

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + RG GLGLSIV+  + LHGG ++  S     TT    +P
Sbjct: 329 EKIRGTGLGLSIVKQCVELHGGTIACESQINLGTTFIVTLP 369


>gi|50086083|ref|YP_047593.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
 gi|49532059|emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
          Length = 932

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+ELR+PL +I GF  L+   +  +L+++Q  Y++ I  SS  LL L+
Sbjct: 284 ANQAKSVFLANISHELRTPLNSIDGFIHLMLRQQ--NLSNEQRLYMQTIRKSSAHLLALI 341

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +       +   V  D
Sbjct: 342 NDVLDFSKIDAGKLELETAAFNLEEAIFDVMDMLSPLAAQKHIDMAFYYGDNIPEIVIGD 401

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVF 739
             R+ QI + ++SNA+ F+  G  ++ ++   D+ D     FSV+++G  +     K +F
Sbjct: 402 ALRVKQILTNLISNAIKFTPDGEIIVRVRMEHDDIDQCLLHFSVQDSGIGLSGTDRKKLF 461

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             F        R+  G GLGL+I +  + L  GH+    + E   T
Sbjct: 462 ESFSQGDASVTRQFGGTGLGLAISKQLVQLMHGHIGFEDNQERAPT 507


>gi|28900985|ref|NP_800640.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|260366196|ref|ZP_05778656.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260879838|ref|ZP_05892193.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AN-5034]
 gi|260894512|ref|ZP_05903008.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus Peru-466]
 gi|28809431|dbj|BAC62473.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086398|gb|EFO36093.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus Peru-466]
 gi|308091833|gb|EFO41528.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AN-5034]
 gi|308114853|gb|EFO52393.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 873

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 166/352 (47%), Gaps = 24/352 (6%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---SPGTHIRNIAATCSRYYNE 493
            E  +H  + + +  PDG I   N AF  L +     +   SPG  ++           +
Sbjct: 242 AEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQG-------EDTD 294

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-TMLTFV----NVTDS 548
           ++   L +  + S    R  +    +      +E  + P+ +    +L F+    ++TD 
Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDITDR 354

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS- 607
              E+ L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L    L + N ++  
Sbjct: 355 REMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEIL----LENENRREPR 410

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  +  S+  L+ ++NDILD + V+AG + L      L  L+       A +  + N+
Sbjct: 411 ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNL 470

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++ V     + +  V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FSV + 
Sbjct: 471 KLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESELGFDFSVTDT 529

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S
Sbjct: 530 GIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRS 581


>gi|87118404|ref|ZP_01074303.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
 gi|86166038|gb|EAQ67304.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
          Length = 1317

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 123/249 (49%), Gaps = 6/249 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ D ++ E  L    E    A E K+ F+ ++S+ELR+P+  +IG  +L+K +   SL+
Sbjct: 749 DINDRLKKEHELATAKERADIASEAKSHFLANMSHELRTPMNAVIGLLELVKKT---SLS 805

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             QS +++    ++  LL ++NDILD + ++A  M +      L+ L++E+   ++  + 
Sbjct: 806 PVQSDFIDKTQVAAHSLLKILNDILDFSKIEANSMLVEKHEFQLSSLIDEMALILSASLT 865

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             +I +    D  L   +  D  +L QI   + SNA+ F+ KG  +I        +    
Sbjct: 866 TKDIEVLFDIDDNLPETIQTDALKLKQILLNLGSNAIKFTQKGHVLISIKMLSENEISMC 925

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  +  +  + +F  F        RR  G GLGL+I +  I L  G + + S    
Sbjct: 926 VEDSGIGMNPEQLEHIFTDFKQAEASINRRFGGTGLGLAITKKLIELMDGSIRVESHLGK 985

Query: 781 VTTINCRIP 789
            T+ + ++P
Sbjct: 986 GTSFHVQLP 994


>gi|332704442|ref|ZP_08424530.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554591|gb|EGJ51635.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 836

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 24/248 (9%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E    +  EA  +A+  K+ F+ ++S+E+R+P+  ++G  DL   + + + +
Sbjct: 422 DITELKRLEAESKQAMEAAEQANRAKSEFLANMSHEIRTPMNGVMGMLDL---ALMNNPD 478

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                Y++    S+  LLN+VNDILDLA ++AG +++      +      + +++A +  
Sbjct: 479 PSVRSYLQMGKKSAGHLLNIVNDILDLARIEAGRIEIGTREFDVRMSFEALFRTMALEAE 538

Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR------- 714
           +  +R   VI+       + D  RL+Q+F+ ++ NA+ F++KG  TV +  AR       
Sbjct: 539 KKGLRFSAVIASDIPSRLIGDEGRLIQVFTNLIGNAIKFTTKGEITVKVTVARPTDIGMQ 598

Query: 715 ------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG----QRRGVGLGLSIVESF 764
                 D      S+ + G  IP D  + +F  F     RG    Q  G GLGL I    
Sbjct: 599 EACPHTDAICMFASISDTGIGIPADQLEKIFESFAQV--RGDLHLQHFGTGLGLPISRQL 656

Query: 765 INLHGGHV 772
           + L  G +
Sbjct: 657 VELMDGKI 664


>gi|304405182|ref|ZP_07386842.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304346061|gb|EFM11895.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 467

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 128/238 (53%), Gaps = 18/238 (7%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +LR+ D ++  FV +VS+E++SPLT I GF   L+  +  +  + + +Y++ I   S  L
Sbjct: 231 SLRQLDAMRQQFVGNVSHEIQSPLTTIQGFAQALQEGE--TPEADKRRYIQLIGEESRRL 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHENNIRI-KVISDG 675
            +L + +L LA++D    +L  +   L++ L +V    ++  + K  E ++++ +VI DG
Sbjct: 289 SSLSHQLLTLASLDNEGQQLKTAPYRLDEQLRQVLIMNERQWSAKSLELDLQLSEVIIDG 348

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
             G        L Q++  +++NA+ FS  G  + ++    +G+ + ++++ G+ I  +  
Sbjct: 349 NEGL-------LHQVWLNLITNAIKFSRAGGRLAVRLHEASGESVVTIEDQGAGISPEAL 401

Query: 736 KSVFNRFV-SNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  ++A R +     G GLGLSIV   + LH G V   S +   T +  R+P
Sbjct: 402 PHIFDRFYKADAARSRAERVGGSGLGLSIVHKIVLLHDGTVFAESEEGKWTRLTVRLP 459


>gi|149279499|ref|ZP_01885629.1| PAS [Pedobacter sp. BAL39]
 gi|149229792|gb|EDM35181.1| PAS [Pedobacter sp. BAL39]
          Length = 814

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%)

Query: 526 LEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +++++ P P+   +     ++T+    ER L +      +A   K+ F+ ++S+E+R+PL
Sbjct: 257 IQWTVTPDPSTGDLFAIGRDITEKKAQERHLKQAIAMAEEASIAKSEFLANMSHEIRTPL 316

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIGF DL+  ++L  +   Q QY+  ++ S+  LL ++NDILD + ++AG M+L+   
Sbjct: 317 NGIIGFADLVLKTELSEV---QLQYLTVVNESANSLLAIINDILDFSKIEAGRMELHLEA 373

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
             L++L  +    I  ++ +  I + +     L  S   D  RL Q+   +LSNA  F+ 
Sbjct: 374 SDLHELSCQAADIITFQIQQKGIEMLLNVPLDLPESIWTDPLRLKQVIINLLSNAAKFTD 433

Query: 704 KGST-----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            G       V+   + +   F FSV++ G  I  +  + +F  F        +R  G GL
Sbjct: 434 TGEIELKIEVLEYLSAEAARFRFSVRDTGIGIKLEKQREIFEAFAQEDVSTTKRYGGTGL 493

Query: 757 GLSIVESFINLHGGHVSISSS 777
           GL+I    + L    + + SS
Sbjct: 494 GLTISNELLALMDSRLQLMSS 514


>gi|114706097|ref|ZP_01439000.1| two-component hybrid sensor and regulator [Fulvimarina pelagi
           HTCC2506]
 gi|114538943|gb|EAU42064.1| two-component hybrid sensor and regulator [Fulvimarina pelagi
           HTCC2506]
          Length = 884

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E +R+ D ++ + +  +S++LR+PLT +    + L T      N  +++ VE + + +  
Sbjct: 650 EVVRQRDSLRAALLASLSHDLRTPLTAVTAAAEALST------NGPETELVETVRSEARR 703

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L   ++D+LDL  ++ G +  +   I L D +      +++ + + N++  +  +  L  
Sbjct: 704 LNRFLSDLLDLTRIEEGAVTPDLQPIDLTDAITSAVADLSSAIGDRNLQTSI--NPNLPL 761

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD   L  I   ++ NA+ +S++G ++I+ A       +  V + GS IP+     +F
Sbjct: 762 VRADAVLLHHIILNLIDNALKYSARGESIIVVARMGKRGPVIDVLDRGSGIPQGSEHRIF 821

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +RF       +  G GLGL+IV+ F N  G  V  +    G +    R+P++
Sbjct: 822 DRFARGETSDRTGGSGLGLAIVKGFANAMGFTVEAARRQRGGSRFTIRMPAE 873


>gi|89072514|ref|ZP_01159086.1| putative sensor histidine kinase FexB [Photobacterium sp. SKA34]
 gi|89051618|gb|EAR57071.1| putative sensor histidine kinase FexB [Photobacterium sp. SKA34]
          Length = 789

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 124/253 (49%), Gaps = 23/253 (9%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL KA   K SF+  +S+ELR+PL  I+G + +L  +    L  +Q  Y
Sbjct: 264 RDITERKKYEDALEKASSDKTSFISTISHELRTPLNGIVGLSRMLLDT---DLTDEQRGY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  L N+ NDI+DL   D   ++L    +  N+ ++E+         +  +R 
Sbjct: 321 LRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFNEFIDEMGNISQLMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVK 724
            +    +L   +  D  RL Q+   ++ NA  F+ +G  VIL  + +    + D IF V+
Sbjct: 381 DLECLTELPKNIEVDSTRLRQVLWNLIGNATKFTKQGG-VILSVSSEIHEHDADIIFEVE 439

Query: 725 NNGSSIPEDMCKSVFNRFVS------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS- 777
           ++G  IP+    ++F  +        N H     G G+GL++    + L GG +++ S  
Sbjct: 440 DSGVGIPKSEIDNIFAMYYQVKQGDDNIH---AVGTGIGLAVSRQLVQLMGGDIAVHSEV 496

Query: 778 DEGVT-TINCRIP 789
            EG T T+  R+P
Sbjct: 497 GEGSTFTVKIRVP 509


>gi|298242060|ref|ZP_06965867.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555114|gb|EFH88978.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 796

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+   S+EL++P+T++ GFT +L+       + +   Y+  + A    L  L++D+L
Sbjct: 560 KDEFISMASHELKTPVTSLKGFTHVLQRRLTKREDEQGLSYLARMDAQLDKLTRLISDLL 619

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D++ + AG + L      L++LLNE+  ++      + +RI    +G  G+  + D  RL
Sbjct: 620 DISRMQAGKLALRIEAFELDELLNEIVDNVQATTTSHQLRI----EGHTGAQVIGDPDRL 675

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NA 746
            Q+F  +L+NA+ +S +   +I+    +    I SV++ G  I +     +F RF     
Sbjct: 676 GQVFINLLTNAIKYSPEAEHIIIHRFHEGKQVIISVQDFGIGIDQSHHDRIFERFYQVGP 735

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 G+G+GL +    ++ H G + + S     +     +P  E
Sbjct: 736 EEKTYPGLGIGLYLAREIVSRHKGRIWVESRKGAGSAFFVALPQME 781


>gi|283852351|ref|ZP_06369622.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
 gi|283572308|gb|EFC20297.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
          Length = 1919

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 137/270 (50%), Gaps = 17/270 (6%)

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            D+ L  SI PL     + T   + + +RAER L    +A   A   K+ F+ ++S+E+R+
Sbjct: 1490 DNRLAASIRPL-----VETCAQLIERLRAERRLVAAKQAAEAASLSKSEFLANMSHEIRT 1544

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL  ++G   L++T+   +L+S+Q +Y +    SS  L  L++DILDL+ V++G + +  
Sbjct: 1545 PLNGVLGMLQLMQTT---ALDSEQKEYADLAVKSSQRLTRLLSDILDLSLVESGRLTIRE 1601

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
            +     DL   V    A    +  + + V  D  L    V D  RL QI   ++ NA+ F
Sbjct: 1602 APCAPADLRAAVLDLFALPARDKGVALSVFLDESLPEKIVGDEVRLRQILFNLVGNAVKF 1661

Query: 702  SSKGS-TVILKAARDNGDFIF----SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
            + +G  T+ +  A    D  F    +V + G  IP+D   ++F  F  V   +  +  G 
Sbjct: 1662 TDQGQVTLEIGPASRRFDAAFRVLVTVADTGIGIPDDQLAAIFEPFGQVEGVYVRRFGGA 1721

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            GLGLSIV   + L GG +++  S+EG  TI
Sbjct: 1722 GLGLSIVRRLVGLMGGELAV-DSEEGRGTI 1750


>gi|326316997|ref|YP_004234669.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373833|gb|ADX46102.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 595

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 125/259 (48%), Gaps = 21/259 (8%)

Query: 549 VRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +R  R L +KN AL       R A+  K+ F+  +S+ELR+PLT+I GF +L++      
Sbjct: 338 LRGLRQLEQKNVALAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAELMEQ----- 392

Query: 602 LNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              +Q  Y E    I +++  L  L+++ILDLA V AG M +      + +L+       
Sbjct: 393 -RLEQPSYREAAGLIRSAAEHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELVGTTVDLF 451

Query: 659 ATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A    +  + + K I+         D  RL QI + +LSNA+ F+ +G   +     +  
Sbjct: 452 AISAAQKGLTLEKRIAPDVPHMLRCDGLRLKQILNNLLSNALKFTREGGVRLEVDTAEAR 511

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
           +  F V + G  IP D+ + +F +F         Q  G GLGL++      L GG ++++
Sbjct: 512 NLRFRVIDTGPGIPADLHEVIFEKFSQGGAEVSTQHGGTGLGLALSRGLAELMGGRLTVA 571

Query: 776 S-SDEGVT-TINCRIPSKE 792
           S +  G   T+   +P++E
Sbjct: 572 SETGHGACFTLELPMPAQE 590


>gi|260460489|ref|ZP_05808740.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259033594|gb|EEW34854.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 762

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 120/239 (50%), Gaps = 9/239 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   RAE +L    E    A + K+ F+  VS+E+R+P+  I+G   LL  +   SL+
Sbjct: 230 DITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLLADT---SLS 286

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YV  IS S++ LL L+ D+LD + ++AG        I + ++ + + + +A +  
Sbjct: 287 PEQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPISVREIADNIIELLAARAF 346

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI 720
             +I +    +  +   + AD  R+ Q+   ++ NA+ F+  G  +  + +A     D I
Sbjct: 347 AKDIGLGCHVEPDVPQMITADPGRVRQVLLNLIGNAIKFTDGGGVLVSVARARTATTDRI 406

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F++ + G  + ++  + +F  F        R   G GLGL+I +  +   GG +S+SS
Sbjct: 407 CFTIADTGPGLRDEDMERIFEEFEQADGTSTRTHGGAGLGLAISKRLVAAMGGTISVSS 465


>gi|167763266|ref|ZP_02435393.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
 gi|167698560|gb|EDS15139.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
          Length = 624

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  E   ++D +K++F+ ++S+E+R+PL  IIGF+ LL   +      +++ Y+ 
Sbjct: 387 EAMLIDAKEKAEESDRLKSAFLANMSHEIRTPLNAIIGFSSLLPHIEDAE---ERNHYIS 443

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ ++ +LLN++ND+LDL+ ++AG ++L+     L+DL++E        + E  + +K 
Sbjct: 444 LINHNNELLLNIINDVLDLSKIEAGHIELSPVWCNLSDLIDESCTECQPNVPE-GVTLKK 502

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      D  R+ Q+ S ++SNA+  + +G   I      +   I SV + G  IP
Sbjct: 503 RYPATPNLIKQDPMRIKQVLSNLISNALKNTVQGYVEISYETTPSETRI-SVSDTGRGIP 561

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           E+    +F RF       Q  G GLGL I  S +    G + ++S+    +T     P +
Sbjct: 562 EEKLGIIFERFEKTDAFIQ--GAGLGLPICRSIMEHMNGTIEVTSTVNKGSTFTVVFPCQ 619


>gi|167645279|ref|YP_001682942.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347709|gb|ABZ70444.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 573

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 129/262 (49%), Gaps = 19/262 (7%)

Query: 539 MLTFVNVTDSVRAE--------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +LT +NV  S RA         R L E+ E   +A+  K++FV   S+ELR+P+  ++G 
Sbjct: 154 VLTTINVMLSNRAAASRMDALTRNLREERERALEANRAKSTFVAVTSHELRTPMNGLLGM 213

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
              L  S   +LN  Q ++V  +  S   L+ ++ND+LDL+ ++AG + L++    L+DL
Sbjct: 214 AYALDRS---NLNEAQRRHVRLMIKSGDSLMQVLNDVLDLSKIEAGKVDLDHVATNLHDL 270

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TV 708
           +     +      E  + ++   D    +++ AD QR+ Q+   ++SN + F+S+G  T+
Sbjct: 271 IRSAGDAWRDAAAEKGLWLRTEIDPSAPAWILADPQRVRQVLMNLISNGLKFTSQGGVTI 330

Query: 709 ILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
            L AAR + + +      V + G  +  +    +F+ F    NA      G GLGL+I  
Sbjct: 331 QLTAARPSDEGVREIQLRVVDTGIGVTAEFHDRIFDSFTQADNAVSRSHGGTGLGLTISR 390

Query: 763 SFINLHGGHVSISSSDEGVTTI 784
           +      G +++     G T +
Sbjct: 391 ALARQMDGDLTLEHGASGATFV 412


>gi|52142939|ref|YP_083890.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|196040261|ref|ZP_03107562.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|206973621|ref|ZP_03234539.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217960012|ref|YP_002338568.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|222096096|ref|YP_002530153.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|51976408|gb|AAU17958.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|196028746|gb|EDX67352.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|206747777|gb|EDZ59166.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217065385|gb|ACJ79635.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|221240154|gb|ACM12864.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 385

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A   N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGNDGDYIDITAYESNNMIAIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 375


>gi|42781624|ref|NP_978871.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42737547|gb|AAS41479.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 385

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A   N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGNDGDYIDITAYESNNMIAIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 375


>gi|56421266|ref|YP_148584.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56381108|dbj|BAD77016.1| two-component sensor histidine kinase (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
          Length = 582

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 4/230 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ ++I+  FV +VS+EL++P+T+I GF + L    +    +    ++  I   S  L 
Sbjct: 351 LKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAMKD-EAALEHFLTIILKESERLQ 409

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV ++LDL+ ++    +L    + +  ++ E       K  E  I + + S   L    
Sbjct: 410 TLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGL-VIR 468

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R+ QI   +L+NA+ ++ +   V ++A     + +  VK+ G  I E     +F R
Sbjct: 469 GDRNRMKQILLNLLANAITYTPEHGRVAVEAEETEKEVLIHVKDTGIGIEEKEIPRIFER 528

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGLSIV+  +  H G+++++S     T      P
Sbjct: 529 FYRVDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASKVGRGTVFTIHFP 578


>gi|150017259|ref|YP_001309513.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903724|gb|ABR34557.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 506

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 139/277 (50%), Gaps = 21/277 (7%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           DDE  SL  +L  LS + L+ +++ L      L      D +  ER L    E +RK   
Sbjct: 231 DDEIGSLAKSLNFLSKN-LQAALVDLQQKNKKLK-----DDIEKERQL----EDMRK--- 277

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
               F+ +VS+EL++P+  I G+ + +K   +   ++  + Y+E I   S  +  LV ++
Sbjct: 278 ---DFISNVSHELKTPIGIIEGYAEGIKDGIVSGEDA--NLYLETIIDESKKMTVLVTNM 332

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L+L+ +++GI+K N+ +  +N L+N++ +       EN   +   S        AD  ++
Sbjct: 333 LELSKLESGIIKPNFESFNINRLINKILKKHKLDFEENKFNVNFNSSIPYSYVYADPFQM 392

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---S 744
            Q+ + +++NA+ ++  G+ + +        F  SV+N G  IPE     +F++F     
Sbjct: 393 EQVLTNLITNAIKYTPPGNDINVNIEEGLDKFKISVQNIGVVIPEAEISKLFDKFYRIDK 452

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  R Q+   G+GLSIV++ + LH    ++ + + GV
Sbjct: 453 SRERTQKNSTGIGLSIVKNILRLHNSEFNLQNINNGV 489


>gi|117923548|ref|YP_864165.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607304|gb|ABK42759.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1116

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 177/392 (45%), Gaps = 50/392 (12%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE K N L  +    + +L + + +  P+G     NPAF     ++E ++   T    +
Sbjct: 594 ELEKKSNFLQSL----VQNLPDLIWMKDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFV 649

Query: 484 AATCSRYYNESD-------------GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
               + ++  +D              W  FAA      D  K+L           LE + 
Sbjct: 650 DQKLADFFRMNDLLAIEKGGPVINQEWVTFAA------DGHKAL-----------LETTK 692

Query: 531 IPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P+ + Q  +  V     ++T + +AE+ L    E    A + K+ F+  +S+E+R+P+ 
Sbjct: 693 TPMFDKQGRIIGVLGVAHDITATKQAEQDLIHAKEKAEAAYQAKSEFLATMSHEIRTPMN 752

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG +D+L  +    ++ +Q  ++  +  ++  LL+LV+ ILDL+ ++A  + L    +
Sbjct: 753 VIIGLSDILMET---PIDHEQRDHLLRLQKANKTLLDLVDSILDLSRIEANQISLKQEPL 809

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSS 703
            L  ++ E    ++    +  +R++         +  + D  R+ QI   ++ NA+ F+ 
Sbjct: 810 NLALMVEETMSMMSIVADQKGLRLESQVTQATDDYWSLGDESRIRQILVNLIGNAVKFTE 869

Query: 704 KGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           KGS  V L+   D  +       VK+ G  I  +  +++F++F  V +++  +  G GLG
Sbjct: 870 KGSIWVTLELFTDTLERTLVRLCVKDTGIGIGPEHLETIFDKFTQVDSSYARRYSGTGLG 929

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I    I L GG V + S+    +     +P
Sbjct: 930 LAITRRIIQLMGGKVWVESNPSQGSLFCVELP 961


>gi|332298711|ref|YP_004440633.1| Hpt sensor hybrid histidine kinase [Treponema brennaborense DSM
           12168]
 gi|332181814|gb|AEE17502.1| Hpt sensor hybrid histidine kinase [Treponema brennaborense DSM
           12168]
          Length = 694

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +++SF+    +E+R+P+  I+G  +LL+ ++L   + +Q +YV  I+ S+ +L  L N+I
Sbjct: 4   VQSSFLASTLHEIRTPIQTILGTAELLQETQL---DPEQQEYVRQIAFSADVLYTLANEI 60

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
           LD   +  G M++ Y    +  L  ++   +  + H   + +   I+D    + + D  R
Sbjct: 61  LDFEKIRTGSMQIEYIPCAVGTLTEQIVDLLCIEAHNKGLELVTDIADSVPETIIGDPVR 120

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF 742
           + QI   ++ NA+ F+  G   +  +AR   D      F V ++G  + +   K +F  F
Sbjct: 121 IQQILLNLVKNAVKFTQSGYVAVKVSARKGADGAGTLSFQVIDSGIGVSDSAKKLIFKEF 180

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V       R+  G GLGL+I      L  G ++++ +++G       +P
Sbjct: 181 VQADASTTRKYGGTGLGLAISTRLAALMNGKITVTDNEDGGAVFTFTLP 229


>gi|83649318|ref|YP_437753.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83637361|gb|ABC33328.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 599

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 124/234 (52%), Gaps = 8/234 (3%)

Query: 551 AERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           A++A  E +   R+A+   + K+ F+ ++S+ELR+PL  ++GF  L++     +L+ +Q 
Sbjct: 202 AKQAKVEADFHRRRAEANSDAKSRFLSNMSHELRTPLNAVMGFAQLMQMES-RNLSREQM 260

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q ++ I  +S  LL+L+NDI+DL+ +++G + ++     +  L+NE    I +    NNI
Sbjct: 261 QNIDEIYKASEHLLSLINDIMDLSKIESGQLSISIEPCSVQSLVNESVSMIRSMAMMNNI 320

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSVK 724
            +    + +L   +  DR R++Q+ +  L+NA+ ++ KG    V L+    +G    SV 
Sbjct: 321 SVYE-PEVRLDYLIKVDRTRMVQVLTNFLTNAIKYNRKGGWVKVELEHESRSGMLCLSVA 379

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +NG  I +     VF  F   A      G G+GL++ +  + L  G +   S +
Sbjct: 380 DNGIGIHKKDHHKVFKPFERLAQDMAIEGTGIGLALSQQLVLLMNGQIGFKSKE 433


>gi|256421717|ref|YP_003122370.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256036625|gb|ACU60169.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1013

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 119/235 (50%), Gaps = 13/235 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYIS---ASS 617
           L + D  K +F  ++S+E R+PLT I+G   D+L    +   NS     ++ +S   +++
Sbjct: 327 LAEIDRAKTAFFNNISHEFRTPLTLILGPLHDIL----IHQANSSSKHTIDQVSIAYSNA 382

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVN +LD + ++A  M+ +Y+ + L+    E+  S  + + + N+   +      
Sbjct: 383 VRLLKLVNTLLDFSRIEAHRMQASYTPVDLSQFTTELASSFESAIKKENLFFHIDCTQLS 442

Query: 678 GSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                D Q   +I   ILSNA+ F+ + G +V L+   +N   I S  + G  IP +   
Sbjct: 443 DVIYVDTQMWEKIVFNILSNALKFTFTGGISVSLQETAENAVLIIS--DTGVGIPAEELP 500

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F+RF  V+++      G G+GL++ +  + +HGG ++  S  +  TT   RIP
Sbjct: 501 HIFDRFHRVTSSRSRTHEGTGIGLALTKELVTIHGGDITAVSQPDVGTTFTIRIP 555



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 118/258 (45%), Gaps = 24/258 (9%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER + ++   L K +     F    S++L+ PL  I+ ++ +L  +++ S   K  +Y+E
Sbjct: 748 ERMVRDRTADLTKINAELEQFAFAASHDLQEPLRKILLYSQML-ANEISSDQQKAGRYLE 806

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  + NL+ND+L+ + +   I ++ +++  LN +L  +   +  +++ +  +I  
Sbjct: 807 KIMTSSARMRNLINDLLNFSRL--SIKEVAFTSTDLNTILENLLVDLELQINRSQAKITY 864

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFS---------------SKGSTVILKAARDN 716
                L    A   ++ Q+F  +LSNA+ FS               +     +L     +
Sbjct: 865 TD---LPVIEAVPLQMQQLFFNLLSNALKFSDTRRTPAITVQASIATSADVALLSVPDPS 921

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES-FINLHGGHVSI 774
            +++   + +NG    +     +F  F    HR    G G+GL++ +   IN HG   ++
Sbjct: 922 AEYVKIVITDNGIGFDQKYADQIFTMFQKLHHRTAYAGTGIGLALCKKVVINHHGIIHAM 981

Query: 775 SSSDEGVTTINCRIPSKE 792
           S   EG +     +PS++
Sbjct: 982 SVEGEG-SKFTIILPSRQ 998


>gi|163756479|ref|ZP_02163592.1| Signal transduction histidine kinase-like protein [Kordia algicida
           OT-1]
 gi|161323587|gb|EDP94923.1| Signal transduction histidine kinase-like protein [Kordia algicida
           OT-1]
          Length = 732

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 131/264 (49%), Gaps = 16/264 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLL 594
           F N     +A   L  KN  LR+A E       +K+ F   VS+ELR+PL  ++G T LL
Sbjct: 331 FKNYKFRNKALSKLRLKNAELREAKEEAEQQANLKSQFFSTVSHELRTPLYGVVGLTALL 390

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                   N K ++  + +  SS  LL+L+N++L +  +++  + L  +   + DL+NEV
Sbjct: 391 SED---FPNLKDNENFKSLKFSSKYLLSLINNVLQINKIESKGVTLGRTPFKIRDLINEV 447

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---L 710
             S +  +++N   +    D K+ +  + D  RL QI   ++ NA+ F+  G+  I   L
Sbjct: 448 VNSFSFAINQNKNTVHQEIDPKIPAVLMGDSVRLSQILMNLIGNAIKFTETGNIWIRLEL 507

Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768
              ++    I F+++++G  IP+D   SVF +FV         +G GLGLSIV+  + L 
Sbjct: 508 VHQKEKMHTIKFTIEDDGIGIPKDKQVSVFEKFVQLRPIEKNYQGTGLGLSIVKQLLVLF 567

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
             H+ + S +   T     I  +E
Sbjct: 568 DSHIRLKSEENNGTEFTFVIAFEE 591


>gi|159029103|emb|CAO90092.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 484

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  A E +  FV +VS+ELR+PLT +IG+   L+  +  +LN  Q Q +E  +A +  ++
Sbjct: 253 LSGAWEQQRQFVGNVSHELRTPLTVVIGYLQSLQ-RRSTNLNPYQQQALETATAETERII 311

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ D+LDLA  D+G +      I+LN LL EV  +++ K+ +  + + + ++  +    
Sbjct: 312 RMLQDLLDLARADSGHLHFRSHPIILNTLLTEVA-AMSQKVSDRKMTLLLTNEDVV--IC 368

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D+ RL Q+   +L NA+ +S+    V L   +     +  V + G  I       +F R
Sbjct: 369 GDQDRLQQVLINLLDNAIKYSAPEQPVDLILEKQPSSALIHVCDRGIGISLSHQNRIFER 428

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +    R G GLGL+I +S I    G +++ S     +T    +P
Sbjct: 429 FYRVDESMTRSRDGTGLGLAIAKSLIEGMEGRITLRSQPGQGSTFTIILP 478


>gi|90580601|ref|ZP_01236406.1| putative sensor histidine kinase FexB [Vibrio angustum S14]
 gi|90438259|gb|EAS63445.1| putative sensor histidine kinase FexB [Photobacterium angustum S14]
          Length = 789

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 124/253 (49%), Gaps = 23/253 (9%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL KA   K SF+  +S+ELR+PL  I+G + +L  +    L  +Q  Y
Sbjct: 264 RDITERKKYEDALEKASSDKTSFISTISHELRTPLNGIVGLSRMLLDT---DLTDEQRGY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  L N+ NDI+DL   D   ++L    +  N+ ++E+         +  +R 
Sbjct: 321 LRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFNEFIDEMGNISQLMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVK 724
            +    +L   +  D  RL Q+   ++ NA  F+ +G  VIL  + +    + D IF V+
Sbjct: 381 DLECLTELPKNIEVDSTRLRQVLWNLIGNATKFTKQGG-VILSVSSEIHEHDADIIFEVE 439

Query: 725 NNGSSIPEDMCKSVFNRFVS------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS- 777
           ++G  IP+    ++F  +        N H     G G+GL++    + L GG +++ S  
Sbjct: 440 DSGVGIPKSEIDNIFAMYYQVKQGDDNIH---AVGTGIGLAVSRQLVQLMGGDITVHSEV 496

Query: 778 DEGVT-TINCRIP 789
            EG T T+  R+P
Sbjct: 497 GEGSTFTVKIRVP 509


>gi|302381238|ref|YP_003817061.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191866|gb|ADK99437.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 585

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 122/236 (51%), Gaps = 12/236 (5%)

Query: 541 TFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           T++ ++ +V A ERA T+  +A R     K+ F+  +S+E+R+PL  ++G    +   +L
Sbjct: 176 TWMKLSSTVLALERAQTDAEDANRA----KSDFLATMSHEIRTPLNGVLGMAQAMTADRL 231

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              + +Q Q ++ ++ S   LL +++D+LDLA ++A  ++L  +   L  L+ + +++  
Sbjct: 232 ---SVRQRQRLDIVTQSGHALLTILSDVLDLAKIEARKVELETADFDLETLVEQSRETFR 288

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                  +     +     G++  D  RL QI S ++SNA+ F+  G+  ++  A D G 
Sbjct: 289 AVADAKGLSFDARVEPAAAGTWRGDTTRLRQILSNLISNAIKFTDAGTISVVADAVD-GR 347

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
              +V++ G+ +  +    +F +FV       R+  G GLGLSI     +L GG +
Sbjct: 348 LRVTVEDTGAGVTAEQLPLLFGKFVQADASTTRKHGGTGLGLSICMELAHLMGGSI 403


>gi|269104721|ref|ZP_06157417.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161361|gb|EEZ39858.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 570

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 7/223 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +++ELR+PL  ++G  +LL  +   SL+S+Q + ++ ++ S  +L  ++ND+LD +
Sbjct: 215 FLAMINHELRTPLNGLLGAAELLADT---SLSSEQKKLLDTLNNSGELLRAIINDLLDYS 271

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690
            + AG+++L       + ++N +   +  +  E  + + ++ D  +    + D  R+ QI
Sbjct: 272 KISAGMLELIIKPFNPHQIINNLADIMRYQAQEKQLLLTLVIDNTVPNCLLGDEDRIKQI 331

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           F  +++NA+ F+++GS +IL         IF VK+ G  I E     +F  F       Q
Sbjct: 332 FVNLINNAIKFTNRGS-IILNTTWCEDKLIFQVKDTGIGITEGQQLKLFKPFSQVDISSQ 390

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           R   G GLGL+I +    L  G + + S  E  +T    +P K
Sbjct: 391 RIHEGTGLGLAICKQLCELMSGEIKLISIPEQGSTFTVILPLK 433


>gi|260596417|ref|YP_003208988.1| sensory histidine kinase CreC [Cronobacter turicensis z3032]
 gi|260215594|emb|CBA27830.1| Sensor protein creC [Cronobacter turicensis z3032]
          Length = 491

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 22/279 (7%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKN---S 571
           GTL   +DSV E + +PLP            D   +E R L +  E +R   E KN    
Sbjct: 228 GTLVRYADSVTEAAPLPLP------------DPGSSELRRLAQALENMRVRLEGKNYIEQ 275

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           +V  +++EL+SPL  I G  ++L+ S   ++  +   + + I   +  +  LV  +L  A
Sbjct: 276 YVHALTHELKSPLAGIRGAAEILRESPPPAVAQR---FCDNILEQNARMQALVEKLLHQA 332

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
            ++   + +    ++L  L   + +  A+ + +  +R+ V  + G L     D   L Q 
Sbjct: 333 KLE-NRLDITPEPVLLAPLFATLAELHASMLLQKTVRLTVDPAPGDL-RVAGDEALLHQA 390

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +L NA+DF+  G  + L A R+    I  V + GS IP+     +F RF S    G 
Sbjct: 391 LGNLLVNALDFTPPGGEITLGAWREGDRAIVRVMDTGSGIPDYALARIFERFYSLPRAGG 450

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++  GLGL+ V+    LH G +++++  EG       +P
Sbjct: 451 QKSSGLGLAFVQEVARLHQGEITLANRPEGGVEARLTLP 489


>gi|229131904|ref|ZP_04260769.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
 gi|228651495|gb|EEL07465.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
          Length = 896

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 130/260 (50%), Gaps = 15/260 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD    +  L EK   + ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  
Sbjct: 473 TDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDD 532

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +    I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + 
Sbjct: 533 EIELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAANMQQNFLHIAAQK 592

Query: 666 NIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD-- 718
           N+ + +  SD     F  D +R+ QI   +LSNA  F+ KGS  +    ++    + D  
Sbjct: 593 NVELTIADSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQ 652

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                    SVK+ G  I  +  + +F  F        R+  G GLGLSI + F  L GG
Sbjct: 653 SISKDWMTISVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGG 712

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +++ S+    +T    IP+
Sbjct: 713 WITLESNLGEGSTFTVYIPN 732


>gi|297567508|ref|YP_003686480.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296851957|gb|ADH64972.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 439

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 6/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA  E  ++L +  E +  F Q  ++ELR+PLT ++G    L+ ++  + + + ++ +E+
Sbjct: 202 RAFNELLQSLGELIESERRFTQDAAHELRTPLTVLLGR---LEQAQEENRDPQVARALEH 258

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  +L LV  +L LA  +AG   L    ++LN LL E  + +        + ++V 
Sbjct: 259 AHRSAGRMLALVEKLLHLARAEAG-QGLLREPLLLNRLLAEEAEDLRPLFEAKGLALRVF 317

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +    + DR  L      +L NA+ F++ G  V L   ++  + +  V++ G   PE
Sbjct: 318 LWEEPLEVMGDRLALGLALRNLLENALKFTAAGE-VRLTLRKEGQEALLQVEDTGGGFPE 376

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +    VF RF       +R G GLGL++V + +  HGG V  ++  +G   I  R+P +
Sbjct: 377 EALPHVFQRFYQARVEHRRNGSGLGLALVAAIVRWHGGTVKAANLPQG-AQIGVRLPLR 434


>gi|153836639|ref|ZP_01989306.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AQ3810]
 gi|149749988|gb|EDM60733.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AQ3810]
          Length = 873

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 166/352 (47%), Gaps = 24/352 (6%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---SPGTHIRNIAATCSRYYNE 493
            E  +H  + + +  PDG I   N AF  L +     +   SPG  ++           +
Sbjct: 242 AEVAEHARDTIIITHPDGAIAWVNSAFEQLTEYSLEEVVGKSPGELLQG-------EDTD 294

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-TMLTFV----NVTDS 548
           ++   L +  + S    R  +    +      +E  + P+ +    +L F+    ++TD 
Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDITDR 354

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS- 607
              E+ L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L    L + N ++  
Sbjct: 355 REMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEIL----LENENRREPR 410

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  +  S+  L+ ++NDILD + V+AG + L      L  L+       A +  + N+
Sbjct: 411 ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNL 470

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++ V     + +  V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FSV + 
Sbjct: 471 KLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESELGFDFSVTDT 529

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S
Sbjct: 530 GIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRS 581


>gi|168180587|ref|ZP_02615251.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226949882|ref|YP_002804973.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|182668500|gb|EDT80479.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226842408|gb|ACO85074.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 569

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF++ LK          + ++++ I+  +  L 
Sbjct: 340 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 396

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL L+ ++    +L    I LN+L+ +V   +     + NI+I ++ + K+   +
Sbjct: 397 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGE-KVPLLI 455

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            ++ +  Q+   ++ NA+ ++     V +   +D G+ +F V++ G  I E+    +F R
Sbjct: 456 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFER 515

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +    G + + S  +  T    +IP
Sbjct: 516 FYRVDKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|156935733|ref|YP_001439649.1| aerobic respiration control sensor protein ArcB [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533987|gb|ABU78813.1| hypothetical protein ESA_03603 [Cronobacter sakazakii ATCC BAA-894]
          Length = 779

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 123/240 (51%), Gaps = 28/240 (11%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L+++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LSAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++     +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLRF 380

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                     KV++DG          RL QI   ++SNA+ F+ +G   +  +  +N   
Sbjct: 381 VMEPVRPVPHKVLTDGT---------RLRQILWNLISNAVKFTQQGQVTVRVSYNENEQL 431

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            F V+++G  IP++    +F  +  V ++  G+   G G+GL++        GG +++SS
Sbjct: 432 RFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLAKSMGGDITVSS 491


>gi|77462106|ref|YP_351610.1| sensory transduction histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77386524|gb|ABA77709.1| Probable sensory transduction histidine kinase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 855

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 15/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++   RAER LTE  +     ++ K  F+  +S+E+R+PL  + G  +LL  +    L+
Sbjct: 342 DISARRRAERELTEARDRALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTP---LD 398

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-- 661
            +Q + V  + AS+ ILL+ VN +LD+A  +A   + + + +V  DL   ++  IA +  
Sbjct: 399 PRQRELVSVLRASAEILLDHVNSVLDIARSEA---RPSVAEMVDFDLDRLIEDCIANQSG 455

Query: 662 ---MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +  N I  + ++ G +G    + QRL Q+   +L+NA+ F+  G  +I+++     D
Sbjct: 456 FAAVVGNRIDHRPLT-GPVGILNGEPQRLRQVLLNLLNNAVKFTRNGR-IIVESEVQGAD 513

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V + G  I  +  + VF+ FV+     +RR  G GLGL I      + GG +++ S
Sbjct: 514 VEIRVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGLGLGIARRLARIMGGDLTVQS 573

Query: 777 SDEGVTTINCRIP 789
           +    +    R+P
Sbjct: 574 TPGRGSRFTLRLP 586


>gi|163938573|ref|YP_001643457.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163860770|gb|ABY41829.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 456

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+   SK  +   ++ +Y+  I   S  + NLV D+ 
Sbjct: 235 RSEFLASVAHELRTPLTYVRGYADI--ASKENTPPEQRLRYLSIIKDESDYITNLVQDLF 292

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +    + L+  L  + + I     E  I++       L     D QR  
Sbjct: 293 SLAQMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSL-LVKLDEQRFE 351

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+ + IL+NA   S + S + +    ++     ++++ G  IP +    +F+RF  V  A
Sbjct: 352 QVMANILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKA 411

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 412 RSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLPS 455


>gi|260903049|ref|ZP_05911444.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308108353|gb|EFO45893.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 873

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 165/352 (46%), Gaps = 24/352 (6%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---SPGTHIRNIAATCSRYYNE 493
            E  +H  + + +  PDG I   N AF  L +     +   SPG  ++           +
Sbjct: 242 AEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQG-------EDTD 294

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-TMLTFV----NVTDS 548
           ++   L +  + S    R  +    +      +E  + P+ +    +L F+    ++TD 
Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDITDR 354

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS- 607
              E+ L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L    L + N ++  
Sbjct: 355 REMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEIL----LENENRREPR 410

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  +  S+  L+ ++NDILD + V+AG + L      L  L+       A +  + N+
Sbjct: 411 ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNL 470

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++ V I        V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FSV + 
Sbjct: 471 KLLVDIPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESELGFDFSVTDT 529

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S
Sbjct: 530 GIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHS 581


>gi|238917554|ref|YP_002931071.1| two-component system, unclassified family, sensor kinase
           [Eubacterium eligens ATCC 27750]
 gi|238872914|gb|ACR72624.1| two-component system, unclassified family, sensor kinase
           [Eubacterium eligens ATCC 27750]
          Length = 854

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 117/228 (51%), Gaps = 12/228 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+++R+P+  I+GF+ LL   +      K  +Y E I  SS  LLNL+
Sbjct: 467 ANLAKSQFLANMSHDIRTPMNAIVGFSQLLLRHEKNP--DKVKKYAEKIVISSQHLLNLI 524

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVAD 683
           ND+LD++ +++G   LN S + + D++ E+   I  +  +    + + SD  + G    D
Sbjct: 525 NDVLDMSKIESGNTTLNLSDVNIADIVQEIDNIIRPQAKQKKQTLIISSDNVEYGWIKTD 584

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKS 737
           + RL QI   ILSNA+ ++ +   +  +    N        + F + +NG  + +   K 
Sbjct: 585 KLRLNQILLNILSNAVKYTPEYGMITFEIRGMNHTGSQFAKYKFKISDNGIGMSDGYIKE 644

Query: 738 VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           +F  F    N      +G GLG+ I ++ I+L GG + + S   EG T
Sbjct: 645 IFKPFTREDNNVTDNVQGTGLGMPITKNLIDLMGGTIKVKSKKGEGST 692


>gi|237747982|ref|ZP_04578462.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379344|gb|EEO29435.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 762

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 14/247 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEY 612
           L +  E+ + A+  K+ F+ ++S+++R+P+  IIG T L     L  LN  Q    Y+  
Sbjct: 229 LRQALESAQTANAAKSQFLFNMSHDIRTPMNAIIGMTTL----ALIHLNEPQKIRDYLVK 284

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS+SS  LL L+ND+LD++ ++ G + LN    VL +L+      I  + H  ++ + + 
Sbjct: 285 ISSSSKHLLELINDVLDMSKIENGKIALNDEEFVLPELIEHFCTIILQQAHTRHLTLDIN 344

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNN 726
           +D        D  R+ Q+   I  NA+ F+  G  + ++           G + F + + 
Sbjct: 345 TDLIHEKVTGDTLRINQMLLNIAGNALKFTPAGGKIDIQIRELPPQYAGYGTYQFIISDT 404

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +P D  + +F  F    N+   +  G GLG++I ++ +++  G + + S     TT 
Sbjct: 405 GIGMPADFIEKIFEPFERAHNSIGNKIEGTGLGMAITKNIVDMMNGRIDVESEPGKGTTF 464

Query: 785 NCRIPSK 791
              +P K
Sbjct: 465 TVTVPLK 471


>gi|225571072|ref|ZP_03780089.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM
           15053]
 gi|225160153|gb|EEG72772.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM
           15053]
          Length = 1117

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 125/238 (52%), Gaps = 11/238 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R A+E K+ F+ ++S+++R+P+  I+G T++ K + LG    +  + ++ IS S + LL 
Sbjct: 598 RAANEAKSKFLSNMSHDIRTPMNAIVGMTEVAK-AHLGE-QDRVRECLDKISRSGSHLLG 655

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFV 681
           L+ND+LD++ +++G M L+     L +++ E  + +  +     I I +   G K    +
Sbjct: 656 LINDVLDMSRIESGKMSLSAEPFNLAEMVTEAAELVRPQAENKQIHIDIHLYGLKNEKVI 715

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDN-GDFIFSVKNNGSSIPEDMC 735
            D  RL Q+   ILSNA+ ++ +G +V +     K++R     FIF   + G  + ++  
Sbjct: 716 GDELRLRQVGVNILSNAVKYTPEGGSVEVEVRQAKSSRKGYQSFIFRCADTGIGMTQEFL 775

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + +F  F    ++   +  G GLG++I ++ I+L  G + + S     +     +P K
Sbjct: 776 EKLFLPFERAKDSTDSKVVGTGLGMAITKNIIDLMNGDIQVESEPGAGSVFTVTVPLK 833


>gi|166712857|ref|ZP_02244064.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzicola BLS256]
          Length = 1191

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 19/240 (7%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQL 906

Query: 668  RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFS 722
                  D  L  +   D  R+ QI   +L NA+ F+ +GS      +L      G  +  
Sbjct: 907  AFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTERGSVHLRIAVLPQHTQQGIRV-E 965

Query: 723  VKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V++SS
Sbjct: 966  VRDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGSVTVSS 1022


>gi|158339071|ref|YP_001520248.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309312|gb|ABW30929.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1764

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 131/264 (49%), Gaps = 20/264 (7%)

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            LTF N   +   + A T + +A  +A+  K+ F+ ++S+ELR+PL  I+GF+ L+  S+ 
Sbjct: 1263 LTFNNQQLAKAKQEAETAQRKA-EQANRAKSIFLANMSHELRTPLNAILGFSQLI--SRD 1319

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             S  + Q + +E I+ S   LL L+ND+L ++ ++AG   L    + L  LL+ V+  + 
Sbjct: 1320 PSTPNYQLEQLEIINRSGEHLLALINDVLTMSKIEAGRSSLRSQIVDLPLLLDTVENMLG 1379

Query: 660  TKMHENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVI------L 710
             K  +    +K+I D  L        D  +L Q+   +LSNA+ F++ G   +      L
Sbjct: 1380 LKAEKKG--LKLIFDRGLTPPHYIRTDPGKLRQVLMNLLSNAIKFTTSGHVQLCLESNTL 1437

Query: 711  KAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESF 764
                  G     D  F+V + GS I  +  K +F  F  +   R  + G GLGL+I   F
Sbjct: 1438 DTPEGAGVPPLLDVRFTVSDTGSGIAPEELKLLFEPFAQTETGRQSQEGTGLGLAISRQF 1497

Query: 765  INLHGGHVSISSSDEGVTTINCRI 788
            + + GG+++  S     TT+   I
Sbjct: 1498 VQIMGGNLTAHSIHNQGTTLTFNI 1521


>gi|1360642|emb|CAA66459.1| rpfC [Xanthomonas oryzae]
          Length = 676

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 17/232 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+ +Q + +  
Sbjct: 124 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDVEQKECLNT 180

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IK 670
           I AS+  LL+LV ++LD++ ++AG ++++     L DL+  V   +  +     +    +
Sbjct: 181 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLRDLIGSVNMILQPQAKTRGLDYGTE 240

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724
           V +D        D   L Q+   +L NA+ F+  G  V+L+ AR  G+        F V+
Sbjct: 241 VATDVP-DLLKGDTGHLRQVLLNLLGNAVKFTDHGH-VLLRVARLAGNGADTVRLRFDVE 298

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           ++G  +P DM   +F  F   A  G  R   G GLG +I +  I   GG + 
Sbjct: 299 DSGIGVPMDMRPRMFEAF-EQADMGLSRRYEGTGLGTTIAKGLIEAMGGAIG 349


>gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1223

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 128/272 (47%), Gaps = 21/272 (7%)

Query: 524  SVLEYSIIPLPNA---------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            +V +   +PLP             ML   +VT   + E  +    +      E+K+ FV 
Sbjct: 793  AVFDVVALPLPGETHRTEGVAHDVMLLLQDVTSRKQWEEQMRASRDEAAAMSELKSQFVA 852

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            ++S+E+R+PL+ I+G  D+  T++     +    Y   +   +  LL ++ND+LD + ++
Sbjct: 853  NISHEMRTPLSGILGIADVALTTE--GNPALLRNYFSMVQNVAEGLLGVINDLLDFSRLE 910

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSK 693
            AG M L+     L+  + +    +A +     + +++ + +G   +   D  RL QI   
Sbjct: 911  AGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQILVN 970

Query: 694  ILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVS--N 745
            ++ NA+ F+ +G TV +  +  +G        +F++++ G  IP +    +F  F     
Sbjct: 971  LVGNAVKFTPQG-TVHVDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQADG 1029

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            ++  Q  G GLGL+I    + L GG + + S+
Sbjct: 1030 SYSRQHTGSGLGLAISRHLVELQGGDIGVQST 1061


>gi|332528037|ref|ZP_08404070.1| histidine kinase-like protein [Rubrivivax benzoatilyticus JA2]
 gi|332112610|gb|EGJ12403.1| histidine kinase-like protein [Rubrivivax benzoatilyticus JA2]
          Length = 1055

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 24/244 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII-GFTDL-LKTSKLGSLNSKQS 607
           +A R L    E   +A+E K+ FV+++S+E+R+P+  I+ G T L L+T     L+ +Q 
Sbjct: 313 QAGRELQLAREEADEANEAKSRFVRNMSHEMRTPMNTIVLGLTHLSLQTD----LSGEQR 368

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +V+   A+S ++L L+ND+LD + ++AG M +  +   L +++ +  + +        +
Sbjct: 369 DFVDKAQAASRMMLALINDVLDFSKIEAGRMTIESARFSLEEVVGQAVELVRQPAQHKEL 428

Query: 668 RIKVI-SDGKL----GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----- 717
            +    +D  L    G+   D  RL Q+ + +LSNA+ F+S+G   +   +  +G     
Sbjct: 429 ELLCDWADPSLLVDRGTLRGDALRLQQVLTNLLSNAVKFTSRGQVRLTVDSATSGDDAVV 488

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           D +  V++ G  +  +    +F  F         H G   G GLGL+I    + L GG +
Sbjct: 489 DLLLVVEDTGIGMSAEQIGHLFREFAQADVSITRHYG---GTGLGLAITRRLVELMGGTI 545

Query: 773 SISS 776
           ++ S
Sbjct: 546 AVRS 549


>gi|325479541|gb|EGC82637.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 491

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 4/241 (1%)

Query: 551 AERALTEKN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +E A+T  N  E + K +++KN F+  VS+ELR+PLT+I G+   L+  ++       SQ
Sbjct: 245 SELAITLNNLSENIVKREDMKNEFISSVSHELRTPLTSIKGWAITLQAPEIQKNEDMMSQ 304

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I      L  +V D+LD + + +   K +   + + +L  ++   +  +    NI 
Sbjct: 305 GLKIIEDEGDRLSMMVEDLLDFSRLSSTNYKYDKEKLDIVELSKQIHTQLYPRTQSQNID 364

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            K ++  K     AD+ R+ ++   I+ NA+ F+ +G  + L   ++    + +VK+NG 
Sbjct: 365 FKFVTIYKNIMVYADKNRMKEVLINIIDNAIKFTDEGGNIDLILDQNEDKVLITVKDNGE 424

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I ED    V ++F   +    +   GLGLSI E  I  HGG + I S     T++   I
Sbjct: 425 GIKEDEIAFVASKFYKGS--SSKSHTGLGLSICEEIIKGHGGKLVIKSKYTVGTSVIVEI 482

Query: 789 P 789
           P
Sbjct: 483 P 483


>gi|315125696|ref|YP_004067699.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           sp. SM9913]
 gi|315014210|gb|ADT67548.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           sp. SM9913]
          Length = 772

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 125/240 (52%), Gaps = 11/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  +AL  A + K  F+  +S+ELR+PL  I+G T +L  ++L   N +Q  +   + +S
Sbjct: 265 EAAQALETAYKDKGKFIATLSHELRTPLNGIVGLTRMLLDTEL---NKQQRSWCNTVFSS 321

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L N+ NDI+DL  +D   + +  + I ++D +N+V         +  +  +V   G 
Sbjct: 322 AETLGNIFNDIIDLDKIDREQLDIAANEINVSDFINDVVNFAGLIAEQKELSFEVKRSGM 381

Query: 677 LGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731
           L  + + D  RL Q+   +++NA+ F+ +GS VIL  AR+N +     I  + + G  IP
Sbjct: 382 LDIYALLDPTRLRQVVWNLINNAVKFTQQGS-VILDCARENREDGPWLIIKILDTGEGIP 440

Query: 732 EDMCKSVFNRFVSNAH-RGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F+ +      +G    G G+GL++ ++ ++   G ++++S+    +    +IP
Sbjct: 441 QEQLTRIFDMYYKAPDLKGTNAIGSGIGLAVTKALVSAMKGTITVNSTPGEGSCFTVQIP 500


>gi|288960032|ref|YP_003450372.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912340|dbj|BAI73828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 751

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 135/297 (45%), Gaps = 48/297 (16%)

Query: 525 VLEYSIIPLPNAQT---MLTFVNVTDSVRAER-----------------ALTEKNEALRK 564
            L    +P P+ +      T  +VTDS R++                  AL EK +  R+
Sbjct: 161 ALSLRPVPGPDGRARWITATCADVTDSRRSQEELRAAEEQLTRLAAETFALAEKLDGARE 220

Query: 565 -----------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEY 612
                      A   K+ F+  +S+ELR+P+T +IG  DLL    LG+ LN +Q   V+ 
Sbjct: 221 EAEDARVAAENASRAKSRFLAMMSHELRTPMTAVIGMGDLL----LGTGLNEQQIALVKT 276

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           + +S+  L+ ++ND+LD + ++AG + L      L  L+ +V Q    +     + +   
Sbjct: 277 LRSSADTLMTILNDVLDFSKIEAGQLTLEEIDFSLPRLVEDVVQLFLVRAAAKGLSLSAS 336

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------DFIFS 722
           I++        D  RL Q+   ++SNA+ F+ +G+  I   + D              F 
Sbjct: 337 IAENTPRHIRGDPTRLRQVLYNLVSNAIKFTDRGAIEIAVWSPDPPASPLSASPMTLRFE 396

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           V+++G  +  D    +F+ FV       R+  G GLGLSI +  +   GG +S++S+
Sbjct: 397 VQDDGIGMTADQRARLFDAFVQADASTSRKYGGTGLGLSICKRLVEAMGGEISVAST 453


>gi|255535690|ref|YP_003096061.1| two-component system sensor histidine kinase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341886|gb|ACU07999.1| two-component system sensor histidine kinase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 639

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+   S+EL++PLT++  +  +L+     S + K +   + +      L +L+ D+L
Sbjct: 414 KDTFLGIASHELKTPLTSLKLYAQVLERMLAKSGDQKHADLAKKMDLQVVKLTSLIADLL 473

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNE-VKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           D+  ++AG + LN +      L+ E V++   + +H   I ++ ++ G +    AD++R+
Sbjct: 474 DVTKINAGKIHLNEAHFDFKSLVEETVEEQQMSTLH--TIEVEELAGGMV---FADKERI 528

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ + ++SNA+ +S + S +I+K  + +GD +FSV + G  +P D    VF ++  VS 
Sbjct: 529 SQVMTNLISNAIKYSPQASKIIVKTKKVDGDLVFSVTDFGIGLPRDTMHRVFEQYYRVSA 588

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +    G+GLGL I    +    G + + S  +  +T    +P
Sbjct: 589 EDQNTFPGLGLGLYIAGQIVERSNGKIWVESEIDRGSTFYFSLP 632


>gi|228964063|ref|ZP_04125190.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795633|gb|EEM43113.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 896

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++    + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFNPIETTNLSHDMQSISKEWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNLG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|254492357|ref|ZP_05105529.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224462249|gb|EEF78526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 557

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 17/233 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R  TEK EA   A++ K +F+ ++++ELR+P++ IIG  D+L  S   +L+  Q   V  
Sbjct: 164 RRTTEKAEA---ANDAKTTFLANMTHELRTPMSGIIGILDILGQS---TLDKAQLNQVSL 217

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            S S+  +L+++NDILD + +DA  + +N+    L ++ + V ++ A  +H+ + + K I
Sbjct: 218 ASKSANQMLSVINDILDFSKIDADKVTVNHEAFNLYEVFSSVIETFA--LHQQSQKKKFI 275

Query: 673 SD---GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKN 725
            +    K  +   D  RL Q+   +LSNA  F++ G   +     D    N      V +
Sbjct: 276 LNCQWDKTLNVNGDPMRLRQVLFNLLSNADKFTTNGEVAVTAKVFDIDAENIRINCDVSD 335

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G  I +D  + +F  F  + NA   +  G GLGL I +    L GG +S+ S
Sbjct: 336 TGIGIEQDQLERLFIPFEQLDNASSRKYGGTGLGLVISQRLCELMGGSISVES 388


>gi|84502325|ref|ZP_01000473.1| sensory box histidine kinase [Oceanicola batsensis HTCC2597]
 gi|84389685|gb|EAQ02404.1| sensory box histidine kinase [Oceanicola batsensis HTCC2597]
          Length = 665

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 4/226 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E   A  +  E + +FV  V++ELR+PLT++ G  DLL      +L    ++ V   S
Sbjct: 411 MLEDISAQERLAEARMAFVTSVNHELRTPLTSLSGALDLLGDRFGDTLPQGAAKLVSMAS 470

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--I 672
            ++  LL LVNDIL L  +D   + +    + +   L E   + A      ++ I+V  +
Sbjct: 471 RNTERLLVLVNDILTLQAIDQQQLSIAREPVRVGQALTEASATNAGYGLSRDVTIRVNPL 530

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    + D  RL QI + ++SNA+ +S  G  V L A   +      V + G  IP+
Sbjct: 531 PDHEDPVLMLDPVRLQQILANLISNAIKYSPPGGVVNLGADVTDKAVSLYVTDTGPGIPQ 590

Query: 733 DMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISS 776
                +F+RF    H    Q  G GLGL+I    +   GG ++I +
Sbjct: 591 AALDRLFDRFTKPIHGRDVQASGTGLGLAITRELVQRQGGEITIET 636


>gi|313617213|gb|EFR89705.1| alkaline phosphatase synthesis sensor protein PhoR [Listeria
           innocua FSL S4-378]
          Length = 254

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 118/236 (50%), Gaps = 10/236 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 22  IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 78

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E NI++ V  +  +  
Sbjct: 79  LHRLIMDILALSRIEQNPVAENIEPVDVDEVIEQSSRTIFEMATEKNIQVSV-PEKTIPP 137

Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            +   DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      
Sbjct: 138 IIIETDRDKLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAKDIDR 197

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VF RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 198 VFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 253


>gi|298244484|ref|ZP_06968290.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551965|gb|EFH85830.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 482

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 114/238 (47%), Gaps = 10/238 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +TE+ E  R+ DE    F+   S+EL+ PLT +   +  L+    G+      Q +  + 
Sbjct: 249 MTERKELERRKDE----FISIASHELKVPLTALTLLSSRLRKKLTGNDGFAAEQVLTRME 304

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  L+ND+LD++ +  G  K +Y+   L DL + + + +A   H        +  
Sbjct: 305 GQVRTLTRLINDLLDVSKIQMG--KFDYADESL-DLASLIHEVVAECQHATTTHTLEVHG 361

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              GSFV DR RL Q+ + +L+NA+ +S + + V +  +R +G     V++ G  IP++ 
Sbjct: 362 ALSGSFVGDRDRLSQVVTNLLTNAVKYSPQANRVDIHLSRSSGYARIHVQDYGVGIPKEQ 421

Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F RF    +  + R   G+G+GL I +  +  + G + + S +         +P
Sbjct: 422 QQIIFERFNRGTYSRKERAFPGLGMGLYIAQEIVKHYQGEILVESEEGKGAIFTLSLP 479


>gi|290474124|ref|YP_003467001.1| sensory histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation [Xenorhabdus
           bovienii SS-2004]
 gi|289173434|emb|CBJ80211.1| sensory histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation [Xenorhabdus
           bovienii SS-2004]
          Length = 905

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 136/264 (51%), Gaps = 8/264 (3%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  +      L+ + E+ +   + ++++NS +  +S++LR+PLT + 
Sbjct: 635 VPEQQRLLQTFTGLIANALERLHLSRRAESAKLETEREQLRNSLLAALSHDLRTPLTVLF 694

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T++L    L + NS  +Q V  I         LVN++LD+A + +G ++LN     L 
Sbjct: 695 GQTEILMLD-LSTENSPHTQQVNQIRQQILSTSRLVNNLLDMARIQSGGIQLNLEWHSLE 753

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    +S+   +    + + + ++  L     D   L ++F  +L NA+ ++ + + +
Sbjct: 754 EIVGSALRSLEYTLSRYTVELSLSANLLLH---CDACLLERVFINLLENAIKYTHEQTPL 810

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            ++A  +       + + GS IP+   + +F++F          GVGLGL+I  + I +H
Sbjct: 811 GIRATTEYKQVHIEIWDAGSGIPQGQEQVIFDKFSRVRKESAIPGVGLGLAICRAIIEIH 870

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GGH+  +++ +G  + +  +P +E
Sbjct: 871 GGHIWAANNKKGGASFHFVLPLEE 894


>gi|153874606|ref|ZP_02002762.1| periplasmic sensor hybrid histidine kinase [Beggiatoa sp. PS]
 gi|152068930|gb|EDN67238.1| periplasmic sensor hybrid histidine kinase [Beggiatoa sp. PS]
          Length = 468

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 15/215 (6%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+PL  I+G+  +L   +  SL  KQ + +  I  S   LL L+NDILDL+ ++A
Sbjct: 1   MSHELRTPLNGILGYAQILSHDR--SLADKQKEGLNIIKQSGEHLLTLINDILDLSKIEA 58

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI---KVISDGKLGSFV-ADRQRLLQIF 691
           G ++L  +   L   L  + +    +  E +I     +    G+L + V  D +RL QI 
Sbjct: 59  GKLELVENDFYLPTFLQGIVELFRLRADEKDIAFIYEENSPQGRLPTGVHGDEKRLRQIL 118

Query: 692 SKILSNAMDFSSKGSTVILKAARDN--------GDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             +LSNAM F+ KGS     + + +        G   F ++++G  I  D   ++F  F 
Sbjct: 119 LNLLSNAMKFTFKGSVTFTVSYQSDSFLDGLQKGRLDFKIQDSGVGIATDDIANIFEPFQ 178

Query: 744 SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
               + Q+  G GLGL I +  + + GG ++++S 
Sbjct: 179 QVGEQSQQIEGTGLGLPISKKLVEMMGGQLNVTSQ 213


>gi|11935116|gb|AAG41977.1|AF311942_1 ethylene receptor [Carica papaya]
          Length = 634

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 41/311 (13%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +I   D  RK     LEL+ + V +   + L +A  +       +S+RA   L E+N AL
Sbjct: 278 LILPTDSARKWRDHELELV-EVVADQVAVALSHAAIL------EESMRARDQLMEQNVAL 330

Query: 563 ---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
              R+  E+    +N F+  +++E+R+P+  II  +          L  +Q   +E +  
Sbjct: 331 NLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALS---SLLLETELTPEQRVMIETVLK 387

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS +L  L+ND+LDL+ ++ G +KL+  T  L  +  EV   I        + + +I   
Sbjct: 388 SSNLLATLINDVLDLSRLEDGSLKLDSETFNLQGIFREVINLIKPITSVKKLSMTLIMAP 447

Query: 676 KLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARD---------NGDF 719
            L +  V D +RL+Q    ++ NA+ F+ +G   I+       A+RD          G F
Sbjct: 448 DLPACAVGDEKRLMQAILNVVGNAVKFTKEGYVTIVASVAKPDASRDWPECYPVSSEGHF 507

Query: 720 --IFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                VK++G  I P+D+   +F +F        R+    GLGL+I + F+NL GGH+ I
Sbjct: 508 HLCVQVKDSGCGIHPQDI-PHLFTKFAQPRSGSSRKNGSAGLGLAICKRFVNLMGGHIWI 566

Query: 775 SS--SDEGVTT 783
            S  +D+G T 
Sbjct: 567 ESEGADKGCTA 577


>gi|75763065|ref|ZP_00742850.1| Two-component sensor kinase ycbM [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489443|gb|EAO52874.1| Two-component sensor kinase ycbM [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 340

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 106 KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQ-EYLKILYMKSNNLKH 164

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++V+        +A
Sbjct: 165 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPESTCPIIA 224

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I S ++ NA+ +   G  V ++    + ++   + + G  IP+   ++VF R 
Sbjct: 225 DHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDLQNVFERM 284

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    T     IP
Sbjct: 285 YRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIP 333


>gi|296104455|ref|YP_003614601.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058914|gb|ADF63652.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 919

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 10/221 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L   S+   LN  Q  ++  I  S+  LL 
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSE---LNPTQRDHLHTIERSANNLLA 343

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I +    + +
Sbjct: 344 IINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVI 403

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI-FSVKNNGSSIPEDMCKS 737
            D  RL Q+ + ++ NA+ F+  G+  IL   +A  +N   I   +++ G  IPE     
Sbjct: 404 GDPLRLQQVITNLVGNAIKFTESGNIDILVEKRAISNNKVQIEVQIRDTGIGIPERDQSR 463

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 464 LFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHS 504


>gi|254486348|ref|ZP_05099553.1| hypothetical protein RGAI101_1005 [Roseobacter sp. GAI101]
 gi|214043217|gb|EEB83855.1| hypothetical protein RGAI101_1005 [Roseobacter sp. GAI101]
          Length = 654

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 173/390 (44%), Gaps = 48/390 (12%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN---- 492
            E +  + EG   F    R+ + N  + +      +R+ PG  +  +      + N    
Sbjct: 269 AEAVGCIDEGFIAFDDRERLMIVNDKYLAYHSEIADRIVPGMTMEEMLRLSRSHQNGPEE 328

Query: 493 --ESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSV 549
             + + W   A  +  F   R   +  L  + D   L+ +    P+  T+  + +V+   
Sbjct: 329 LEKREAW--IAERLRCF---RNPGEPFLHSIGDDFWLKVTEAKTPHGYTVGVWTDVSAEK 383

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQS- 607
           RA+       +A   AD  K  F+ +VS+ELR+PLT I G    +K   KL      Q+ 
Sbjct: 384 RAQ-------QAAETADWEKTEFLNNVSHELRTPLTVIFGRATFIKNCEKLPQFKRIQAA 436

Query: 608 -------------------QYVEY----ISASSTILLNLVNDILDLATVDAGIMKLNYST 644
                              ++V      I+ S+  ++ LV+D+LD   V  G ++L+ ST
Sbjct: 437 LDAEGNNSGDLTDAINDSRKFVSEQGVGIAESAKHMIRLVDDLLDWTKVARGTLELDVST 496

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + ++++   V Q + +   +  + +    +G + +  AD+ RL QI    ++NA+ F+  
Sbjct: 497 LRVDEVAETVVQDLQSDAAKKGLSLSYSGEGIVEA-QADKIRLRQILYNFVNNAIKFTDA 555

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
           GS + L   ++ G  +FSV + G  I E+  + VF RF  V  +      G+GLGL+I +
Sbjct: 556 GS-ICLSVRKEVGKVVFSVTDTGRGISEENREKVFQRFHQVDGSMIRDNGGLGLGLAISK 614

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               LH G++++ S+    +T +  +P  E
Sbjct: 615 QLAELHDGYLTLESTLGQGSTFSLILPRAE 644


>gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1119

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 526 LEYSIIPLPNAQTML--TFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  ++P+     +L   F+ ++++    E+ L +  E   +  ++K+ F+  +S+E+RS
Sbjct: 452 IELEVVPIQLGDEVLFTAFLRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRS 511

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G  +LL  S   SL+  Q  +      + + LL+ +NDILD + ++AG M L  
Sbjct: 512 PLNAILGGVELLLDS---SLSKDQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLES 568

Query: 643 STIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                + L+ +V Q +  K  E  +  +  ++     + V D+QRL Q+   ++ NA+ F
Sbjct: 569 HEFEPDKLVAQVLQILEPKAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKF 628

Query: 702 SSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           ++ G+  +     DN          V ++G  I  +    +F  F  V + H    +G G
Sbjct: 629 TASGTITVEMWIPDNHQTEVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTG 688

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGL+I    I + GG + + S
Sbjct: 689 LGLAICSELITMMGGTIELQS 709


>gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 918

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|229134078|ref|ZP_04262898.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196]
 gi|228649413|gb|EEL05428.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196]
          Length = 448

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ D+++  FV +VS+E +SPL++I GF+  L++  +     ++ +Y++ I   S  
Sbjct: 220 KSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSE--EERKRYLKIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++  + D    
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPD---- 333

Query: 679 SFVADRQRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            F+   + LL Q++S I +N++ FS+ G T+           + S+ +NG  + ++    
Sbjct: 334 IFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEKEEMDR 393

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 394 IFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 447


>gi|165871419|ref|ZP_02216067.1| putative sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|227812951|ref|YP_002812960.1| putative sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|254756049|ref|ZP_05208078.1| putative sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|164712903|gb|EDR18432.1| putative sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|227005510|gb|ACP15253.1| putative sensor histidine kinase [Bacillus anthracis str. CDC 684]
          Length = 337

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 117/228 (51%), Gaps = 3/228 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +L
Sbjct: 104 RSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKHL 162

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V++I ++A +DA    L    +  +++  EV      ++ ++NI+++V+        +AD
Sbjct: 163 VDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPESTCPIIAD 222

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
              L++I   ++ NA+ +   G T+ ++    +  +   + + G  IP+   ++VF R  
Sbjct: 223 HLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDLQNVFERMY 282

Query: 744 --SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +      G GLGLSI ++ +  +GGH+ + S     TT    IP
Sbjct: 283 RSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIP 330


>gi|34557246|ref|NP_907061.1| sensory transduction histidine kinase [Wolinella succinogenes DSM
            1740]
 gi|34482962|emb|CAE09961.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Wolinella succinogenes]
          Length = 1555

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 13/236 (5%)

Query: 553  RALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            R LTE N+AL+ A        + K++F+ ++S+E+R+P+  IIG T L + + L  L   
Sbjct: 830  RKLTEYNKALQAAKEKAEAATQEKSNFLANMSHEIRTPMNAIIGMTYLAQQTDLTPL--- 886

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q  Y++ I  S+  LL L+NDILD + ++AG +++      L+ ++  V   +  K  E 
Sbjct: 887  QRDYLQKIEGSANALLGLINDILDFSKIEAGKLEIECIDFDLHSVIEHVSTLVELKATEK 946

Query: 666  NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            N+   V  D  +  +   D  RL QI + + +NA+ F+ +G   I    ++   + F V+
Sbjct: 947  NLEFVVSYDQGMNMNLHGDPLRLGQILTNLANNAIKFTHEGEVGIYITKQELHRYRFEVR 1006

Query: 725  NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + G  +     + +F  F     +   Q  G GLGL+I +  + +  G + + S +
Sbjct: 1007 DTGIGLSPGQKEKLFRSFSQADTSTTRQYGGTGLGLAISKQLVEMMNGRIWVESEE 1062


>gi|87311982|ref|ZP_01094091.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87285286|gb|EAQ77211.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 539

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 11/228 (4%)

Query: 557 EKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           E  EA  +AD     K+ F+  +S+ELR+PLT I+G T+LL+          + Q +E I
Sbjct: 146 EAEEARNRADAANRAKSHFLATMSHELRNPLTAILGMTELLQED---PKPEDRQQMLEMI 202

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + +   L  L+NDILDLA ++AG + +      + D+   +   +  +  +  + +++  
Sbjct: 203 AENGRHLHELLNDILDLAKIEAGRITIELEEANVGDIAASLCNLLRYRAADEGLSLRLEI 262

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSI 730
              +     D  R+ QI   ++ NA+ F+++G    T+ L+ + +    +  V + G  I
Sbjct: 263 KTPVPHMNTDPIRIRQILLNLIGNAIKFNNQGEILVTIDLEKSDETKQVVIDVIDTGIGI 322

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           P D   ++F  FV  A   +RR  GVGLGL I      L GG +++ S
Sbjct: 323 PPDRLTTIFEPFVQVAEDIRRRQPGVGLGLPISREIAILLGGELTVES 370


>gi|332530052|ref|ZP_08406002.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040525|gb|EGI76901.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
           19624]
          Length = 1320

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 150/319 (47%), Gaps = 21/319 (6%)

Query: 473 RLSPGTHIRNIAATCSRYYNESD----GWDLFAAIITSFDDERK-SLQGTLELLSDSVLE 527
           R+ PG+ + +  AT   Y NE D    G  L+A +     + R+ +L+       ++VL 
Sbjct: 446 RVEPGSMLGH--ATREWYVNEEDYREVGEVLYAELAEDRQNRRELTLRRRDGTHFEAVLR 503

Query: 528 YSIIPLPN---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              I  PN     ++    ++T+  R E  L    +  ++A + K+ F+ ++S+E+R+P+
Sbjct: 504 GRAID-PNDLGRGSVWVIADITERKRMEGELRVARDRAQEAAQAKSDFLANMSHEIRTPM 562

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG + LL  ++L   + +Q  Y+  I  +   LL ++NDILDL+ ++AG + + ++ 
Sbjct: 563 NAIIGLSHLLLKTEL---SQRQHDYLRKIQQAGQHLLGVINDILDLSKIEAGKLVIEHTE 619

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             L   L+ V   IA K H   + +   I+       V D  RL QI     +NA+ F+ 
Sbjct: 620 FQLEKALSNVANLIAEKAHAKGLELIFDIAPDVPQRLVGDSLRLGQILINYANNAVKFTE 679

Query: 704 KGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
           +G   +    R+  D       +V + G  +  +  K +F  F    N+   +  G GLG
Sbjct: 680 RGEVTVQIRVRERTDHDVLLYCAVHDTGIGLSVEQQKRLFQSFQQADNSTTREYGGTGLG 739

Query: 758 LSIVESFINLHGGHVSISS 776
           LSI        GG V +SS
Sbjct: 740 LSISLELAERMGGTVGVSS 758


>gi|283520948|gb|ADB25216.1| ethylene response sensor 1 [Citrus hybrid cultivar]
          Length = 634

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 140/306 (45%), Gaps = 40/306 (13%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL----- 562
           D  RK     LEL+ D V +   + L +A  +       DS+RA   L E+N AL     
Sbjct: 283 DGGRKWRDHELELI-DVVADQVAVALSHAAIL------EDSMRARNQLMEQNVALDSARR 335

Query: 563 --RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              KA   +N F   +++E+R+ +  II  + LL  +    L  +Q   +E +  SS +L
Sbjct: 336 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLL 392

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV+D+LDL+ ++ G ++L+     L  +L EV + I        + + +I   +L ++
Sbjct: 393 TTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTY 452

Query: 681 -VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----------------NGDFIFS 722
            V D +RL+Q    I+ NA+ F+ +G   I+ +                    +G F   
Sbjct: 453 AVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLR 512

Query: 723 VKNN--GSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-- 777
           V+ N  G  +P      +F +F  S     Q    GLGL+I   F+NL GGH+ + S   
Sbjct: 513 VQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLESEGL 572

Query: 778 DEGVTT 783
           D+G T 
Sbjct: 573 DKGSTV 578


>gi|212693148|ref|ZP_03301276.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
 gi|212664253|gb|EEB24825.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
          Length = 494

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 129/247 (52%), Gaps = 5/247 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ +   AE  L    +   ++D++K++F+ ++S+E+R+PL  IIGF++LL + ++    
Sbjct: 248 SIQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSEEMDGEE 307

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           SK  ++V  I+ +   LL L++DI+D++ +++  ++       L+ +L+E+ Q  +  + 
Sbjct: 308 SK--EFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQILSEIYQCQSLNI- 364

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            + I  ++    +    + D  R  Q+ + +++NA+ F+  G   +      NG     V
Sbjct: 365 PSKIEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMYGHITLGSKILQNGTIDIYV 424

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           K+ G  +P++    +F RF        + G GLGLSI ++ I    G ++++S +   + 
Sbjct: 425 KDTGMGMPQEKLAHIFERFYK--MDSFKPGAGLGLSICKTIIEHMQGEINVTSIEGKGSN 482

Query: 784 INCRIPS 790
               IP+
Sbjct: 483 FTITIPT 489


>gi|197106701|ref|YP_002132078.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480121|gb|ACG79649.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 554

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 7/226 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+  +S+E+R+PL  ++G    +       L   Q + +E I  S   LL ++ND+L
Sbjct: 182 KSAFLAAMSHEIRTPLNGVLGMAQAMAME---DLPPHQRERLEVIRQSGESLLAILNDLL 238

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           DL+ ++AG ++L  +   + +L      +         +  +V ++    G +  D  R+
Sbjct: 239 DLSKIEAGKLELEDAEFDIQELARGAHATFVAVAEARGLAFEVAVAPAARGVYRGDPLRV 298

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   ++SNA+ F+  GS V +   R  G     V++ G  IP +    +F +F     
Sbjct: 299 RQILHNLISNALKFTEAGS-VRVTVGRSGGALSLVVQDTGIGIPPEKAARLFQKFEQADA 357

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              RR  G GLGL+I      + GG + + S+     T    +P K
Sbjct: 358 STTRRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGATFTVLLPLK 403


>gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 1014

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +   +A   K+ F+ ++S+E+R+P+  +IG T+LL  S L     +Q Q  + ++
Sbjct: 345 LQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDSPLA---EEQRQIADTVA 401

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S   LL ++NDILD + ++AG ++L      +  ++ E     A K     + + V ++
Sbjct: 402 ESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLELVVDMA 461

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA---ARDNGDFIFSVKNNGSS 729
           D      + D  RL Q+   +LSNA+ F+ +G  ++ L+A      +   + S++++G  
Sbjct: 462 DDVPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTLRAHHITEQSATIVVSIRDSGIG 521

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I       +F  F        R+  G GLGLSI +  I   GG + + S
Sbjct: 522 IEPQHIPQLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQIHVFS 570


>gi|88703723|ref|ZP_01101439.1| Heavy metal sensor kinase [Congregibacter litoralis KT71]
 gi|88702437|gb|EAQ99540.1| Heavy metal sensor kinase [Congregibacter litoralis KT71]
          Length = 467

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 18/226 (7%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS---STILLNLVNDIL 628
           F   +++ELR+PLTN+I  T +     LG   S + +Y E + ++      L  +VND+L
Sbjct: 232 FSADIAHELRTPLTNLITQTQV----GLGKSRSLE-EYRELLYSNLEEQERLTKMVNDML 286

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATKMHENNIRIKVISDGKLGSFVADRQR 686
            LA  + G++K  +  +   DL  EV++       + E   +I+++S+GK      DR  
Sbjct: 287 WLAQSEHGLLKPVWEPL---DLAREVRELFDFFEALAEEK-QIELVSEGKTPIIQGDRAM 342

Query: 687 LLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           L +  S +LSNA+  +S+G  V++  A    G  + SV+N G  IP +    +F+RF  +
Sbjct: 343 LRRALSNLLSNALRHTSEGGRVLVGLALSGEGGALLSVQNPGPKIPAEHLPRIFDRFYRI 402

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + + Q  G GLGL+IV+S +  H G++ +  S+ GVT     +P
Sbjct: 403 DPSRQRQSEGAGLGLAIVKSIVEAHEGNIEV-ISERGVTRFTINLP 447


>gi|317404120|gb|EFV84570.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 476

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 1/220 (0%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V+  R +TE+   L + D+ +   V ++S++LR+PLT++ G+ + L+         ++ +
Sbjct: 248 VQMGRRITEQWRELTRQDQQRRDLVANISHDLRTPLTSLHGYLETLRLKDETLDAGERRR 307

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++   A S  +  L  ++ +LA +++G+++L   T  L +L  +V Q           R
Sbjct: 308 YLDIALAQSRKVGRLAQELFELARLESGLVRLEPETFSLPELAQDVVQKFELAAEARQQR 367

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +    D +L    AD   + ++ + +L NA+  ++ G  + L+     G     V +NG+
Sbjct: 368 LTTAIDQELPPVRADLGMIERVLTNLLDNAIRHTAPGGRIELRLGAARGGVQVRVSDNGA 427

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            IPE +   +F R  S    G R G GLGL IV   + LH
Sbjct: 428 GIPEALRAGLFTR-ASVLANGPRDGGGLGLVIVHRILQLH 466


>gi|303249390|ref|ZP_07335615.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302489208|gb|EFL49174.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 545

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 132/271 (48%), Gaps = 36/271 (13%)

Query: 542 FVNVTDSVRAERALTE-KNEAL---RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           F  +   + A RA  + KN AL   R A + K++F+ ++S+E+R+PL  ++G   LL  +
Sbjct: 139 FQAMLQDISARRAAEDAKNAALSQVRSASQAKSAFLANMSHEIRTPLNGVMGMLQLLLAT 198

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                + +Q +Y+     +++ LL L++DILD +++D G M L+     ++D+L+ +   
Sbjct: 199 PH---SPEQDEYMRTAMDAASALLRLLSDILDFSSLDGGTMSLSQELFTVSDVLDPI--- 252

Query: 658 IATKMHENNI-------RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           IA+  HE  I       R+   +  +L     D  RL Q+   +  NA+ +++ G   + 
Sbjct: 253 IASFAHEAAIKGLAFSCRVAPQTPARLRG---DPARLRQLLYNLTGNAIKYTTFGRVELD 309

Query: 711 KAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGL 758
            A  +  +        F+V++ G  IP +    V + F      V+ AH     G+GLGL
Sbjct: 310 VAPVEKPESPCMALLEFAVRDTGIGIPSEKLDHVLDAFAQADASVTRAH----GGLGLGL 365

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +IV +     GG + +SS     T    R+P
Sbjct: 366 TIVRAIAERMGGRILLSSQPGQGTEARVRLP 396


>gi|258511694|ref|YP_003185128.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478420|gb|ACV58739.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 590

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 168/380 (44%), Gaps = 45/380 (11%)

Query: 429 YNTLVKVQGETIDHLS--------------EGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +N L +   ETI+ LS              +GV     DGR+ L+NP  +          
Sbjct: 223 FNALARQLAETIEQLSMEREGLQRILSSLQDGVVATDLDGRVVLANPPAKR--------- 273

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL- 533
               H+R+++       +E    D   ++     +++ ++    +      +  +++PL 
Sbjct: 274 ----HLRHLSVAERGIVDEERLPDRLMSLWVRVREQQDAVYRE-DTWDGRTIGITMLPLY 328

Query: 534 -PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +  T+   + V       R +TE+    R+ D ++  F+ +VS+ELR+PL+ + G+T+
Sbjct: 329 ETDGTTLRGALCVL------RDITEE----RRLDRLRKDFIANVSHELRTPLSMLQGYTE 378

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L    +      + +  E I   +  +  LVND+L+LA +++G  KL+++ + L  ++ 
Sbjct: 379 AL-LDDISDDPDMRRELTEIIHDETLRMKRLVNDLLNLAQLESGQFKLHFARVDLTQVMR 437

Query: 653 EVKQSI-ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V +   A    E+++  +V           D  RL Q+F+ +L NA   +++G+     
Sbjct: 438 RVARKFQALASDEDHLTFEVSIPDHPVMVDGDEDRLEQVFTNLLDNAFRHTAQGTIRFEL 497

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             R +  ++  V + GS IPE+    +F RF     A    R G GLGL+I    +  H 
Sbjct: 498 DIRHDYAYV-RVADTGSGIPEEDVPYIFERFYKADKARTRSRSGTGLGLAIARQLVIEHR 556

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S     TT    +P
Sbjct: 557 GEILVESHLGEGTTFTVVLP 576


>gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1180]
          Length = 918

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|296391824|ref|ZP_06881299.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 733

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 18/223 (8%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD  K+ F+  +S+E+R+PL  I+G  +LL+ + LG    +  Q +  ++ +   LL ++
Sbjct: 255 ADRAKSRFLATMSHEIRTPLNGILGMAELLREASLG---ERDRQRLRALATAGEGLLAIL 311

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGS 679
           N++L  A ++            L  LL +V   +  +  EN  R+ +     + DG  G+
Sbjct: 312 NEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGA 371

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGD--FIFSVKNNGSSIPEDMC 735
                Q L Q+ + +L NA+ F+  G   +   + AR  G      SV ++G  IPE+M 
Sbjct: 372 ----EQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARSVGSERLRLSVADDGIGIPEEMR 427

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F RF        RR  G GLGL+I +  +   GG + + S
Sbjct: 428 ERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVES 470


>gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli
           042]
          Length = 918

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str.
           REL606]
 gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli B str. REL606]
 gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BL21(DE3)]
          Length = 918

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|228919208|ref|ZP_04082579.1| hypothetical protein bthur0011_2370 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840450|gb|EEM85720.1| hypothetical protein bthur0011_2370 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 314

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 119/229 (51%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  E       ++ ++NI+++V+        +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEKLDFSEVTREALIEFLPELSKHNIKLQVLIPESTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L++I   ++ NA+ +   G T+ ++    +  +   + + G  IP+   ++VF R 
Sbjct: 199 DHLSLMRIIGNLMKNAIYYGKNGKTIGVELLETDAAYELLIWDKGPGIPKHDLQNVFERM 258

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S     TT    IP
Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVKSIPWERTTFGFSIP 307


>gi|229195307|ref|ZP_04322079.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
 gi|228588162|gb|EEK46208.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
          Length = 896

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +   + +             D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWISI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQS 718


>gi|225567986|ref|ZP_03777011.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM
           15053]
 gi|225163274|gb|EEG75893.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM
           15053]
          Length = 1194

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 14/253 (5%)

Query: 536 AQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +  +T+ +VTD VR E+     L     A  +A+  K+ F+  +S+E+R+P+  IIG +
Sbjct: 640 GRVCMTWSDVTDVVRQEQRQKEELAAALVAAEQANVAKSDFLSRMSHEIRTPMNAIIGMS 699

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +   S +G  + +    +  I  SS  LL+L+NDILD++ +++G M L    I   + L
Sbjct: 700 TIAAQS-IGD-DEQIEDCISKIGISSRFLLSLINDILDMSRIESGKMLLKSERIPTEEFL 757

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           N +     ++    N+  + I D  L   +V D  +L Q+   ILSNA+ F+ +G  V  
Sbjct: 758 NGINSICYSQAAVKNVDYECIIDPVLADYYVGDAMKLQQVLINILSNAIKFTGEGGKVTF 817

Query: 711 KAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVES 763
            AA     + +    F V + G  + ED    +F  F   S        G GLGL+I ++
Sbjct: 818 SAAERRKTKTDAVLRFIVNDTGVGMNEDFLPHIFEPFSQESTGTTALYGGTGLGLAISKN 877

Query: 764 FINLHGGHVSISS 776
            ++L  G +++ S
Sbjct: 878 IVDLMDGKITVRS 890


>gi|224539276|ref|ZP_03679815.1| hypothetical protein BACCELL_04178 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519108|gb|EEF88213.1| hypothetical protein BACCELL_04178 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 602

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 106/194 (54%), Gaps = 6/194 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E AL +  +   ++  +K++F+ ++S+E+R+PL  I+GF+D+L +   GS   +Q  YV
Sbjct: 402 SESALRDAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLASG--GSSEDEQQGYV 459

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRI 669
           + I  +S +LL L+NDILD++ ++A  +   +    +  L   V  S++  +  EN    
Sbjct: 460 DIIKTNSDLLLRLINDILDVSRLEADRVTFTFEECDVVPLCQRVLASVSQARKSENEFIF 519

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728
           +   D +      D QRL Q+   +LSNA  F+  G  T+ LK      + +FSV + G+
Sbjct: 520 EC--DRESMDMRTDTQRLQQVIINLLSNADKFTRNGKITLGLKVDEKQREVLFSVSDTGT 577

Query: 729 SIPEDMCKSVFNRF 742
            IP +  K VF RF
Sbjct: 578 GIPLEKQKLVFERF 591


>gi|149199753|ref|ZP_01876784.1| transcriptional regulator [Lentisphaera araneosa HTCC2155]
 gi|149137158|gb|EDM25580.1| transcriptional regulator [Lentisphaera araneosa HTCC2155]
          Length = 630

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 548 SVRAERALTEK--NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           S R +R + +   N  L  A +IK+ F   +S+E+R+PL  IIG  ++L+ +   +LN +
Sbjct: 113 SSRVKRLIAQDQINRDLENALQIKSEFSATMSHEIRTPLNGIIGILNILQET---NLNKR 169

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q++ V  IS SS  LLNLVN+ILD A ++   + L      L  L  +V     T   ++
Sbjct: 170 QAELVNIISHSSEALLNLVNNILDFAKLEGKQLTLRPEPFSLFSLCLQVIDLAKTSCDKD 229

Query: 666 NIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719
           ++ + + +  +L     + D+ RL QI S ++SNA+ F+ KG       +++        
Sbjct: 230 DLELFLDAPNELKKLFLMGDKNRLRQIISNLVSNAVKFTDKGYIKLKLELIERNDKQAKI 289

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             S+ + G  I ++  + +F++F  V N+H  +  G GLG+ I E  +     ++ ++S
Sbjct: 290 TISIADTGIGISKEENELIFSKFTQVDNSHSRKNEGTGLGIPISEMILQCMNSNLELNS 348


>gi|317503555|ref|ZP_07961577.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665297|gb|EFV04942.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 1372

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 128/261 (49%), Gaps = 24/261 (9%)

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            D +R E+   E  +A R+ D++K  F  ++S+ELR+PL+ I+    +L + +   +   +
Sbjct: 825  DRMRIEQVTREAEQA-RRLDKMKLDFFANISHELRAPLSLILSPLSVLISQEHDKVKKTK 883

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGI--MKLNYSTIVL--NDLLNEVKQSIATKM 662
               ++ IS ++T LL LVN +LD   +D     MKL    +VL   D+ N   Q +    
Sbjct: 884  ---LQLISRNATRLLGLVNQVLDFRKIDEDCQQMKLVTGDVVLFVRDICNTFLQLMG--- 937

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST------VILKAAR-- 714
               ++      D ++ SF  D ++L +I   +LSNA  ++  G        VI++     
Sbjct: 938  QHKSLTFYSSVDEQMMSF--DAEKLRRIMENLLSNAYKYTPDGGRIDVALRVIMQGKELQ 995

Query: 715  -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGH 771
             +       V + G  I ++    VF RF    H G+    G G+GLSIV+ F+ +HGG 
Sbjct: 996  AEGKQLEIKVSDTGVGIEDEAKAHVFERFYQAFHEGKIVASGSGIGLSIVKKFVEMHGGK 1055

Query: 772  VSISSSDEGVTTINCRIPSKE 792
            VS++ +  G T   C IP ++
Sbjct: 1056 VSVTDNPGGGTVFICLIPLRK 1076


>gi|310826218|ref|YP_003958575.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612]
 gi|308737952|gb|ADO35612.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612]
          Length = 795

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 129/256 (50%), Gaps = 21/256 (8%)

Query: 542 FVNVTDSV-------RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFT 591
           F+++TD         + E    E  EAL  A++    K+ F+  +S+++R+P+  I+G T
Sbjct: 251 FIDITDVTELREMQQKLEAQAAELKEALTAAEQASRAKSDFLSSMSHDIRTPMNAIVGMT 310

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++ +         +    ++ I+ SS  LL L+ND+LD++ +++G M L+ S   L D +
Sbjct: 311 EIARIHL--DDPGRVENCLDKIALSSQHLLGLINDVLDMSAIESGSMALSNSAFSLPDFM 368

Query: 652 NEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +   I     E    + + + G +     AD  RL QIF  ILSNA+ F+ +  ++ L
Sbjct: 369 ENIVAIIQPAAAEKRQHLFIRTFGVEHEHLYADPLRLKQIFINILSNAVKFTPEEGSITL 428

Query: 711 -----KAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVE 762
                 AAR+  G F F+  + G  + +     +F+ F    ++   +  G GLG++I +
Sbjct: 429 TLEEFPAAREGCGQFRFTFADTGMGMTDAFMTHIFDSFTRERDSRVDKTEGSGLGMAITK 488

Query: 763 SFINLHGGHVSISSSD 778
             +++ GG +++ S++
Sbjct: 489 RIVDMMGGRITVRSAE 504


>gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
 gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
          Length = 918

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|254294996|ref|YP_003061019.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
 gi|254043527|gb|ACT60322.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
          Length = 1008

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 124/248 (50%), Gaps = 17/248 (6%)

Query: 549 VRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           ++  R L ++ +A + A   ++IK+ F+  +S+E+R+P+  ++G  +L+ ++K    + K
Sbjct: 294 LKMRRVLHDQVKARKLALSSNQIKSDFLATMSHEIRTPMNGVLGMAELILSAKP---SKK 350

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y E I +S   L  +++DILD + ++AG M+L      + +L++E  Q  A +  + 
Sbjct: 351 IESYAETILSSGNSLQRIIDDILDFSKIEAGRMELERVDCNVVELIDETGQLFAMRAQDK 410

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNG 717
            + I + SD  + S V  D  R  Q+    +SNA+ F++ GS  +            D  
Sbjct: 411 GVEISIFSDPDMPSNVFLDPVRFRQVLDNFVSNAIKFTNTGSIQVKVFEIPDESLDEDGI 470

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            F   V + G  I E+    +F +F        R+  G GLGLSI +S I L  G + + 
Sbjct: 471 RFRVEVVDTGIGISEEAQSRIFEKFSQADTSTTRKFGGTGLGLSICQSIIELANGKIGVD 530

Query: 776 SSD-EGVT 782
           S + EG T
Sbjct: 531 SVEGEGST 538


>gi|332307454|ref|YP_004435305.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
            4H-3-7+YE-5]
 gi|332174783|gb|AEE24037.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1224

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 124/254 (48%), Gaps = 9/254 (3%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++T+  +    LT+    L  AD+ K+ F+  +++ELR+PL  +    +L++   L 
Sbjct: 827  TNTDITEQRKMAEKLTKLTNKLSTADKRKDEFIATLAHELRNPLAPLRNSMELIRN--LQ 884

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +  +     +  +    T ++ L++D+LD++ +    + L    +VL D++    + +  
Sbjct: 885  TDPASMQTALTTMERQVTQMVRLIDDLLDISRISKDKLSLKRQHVVLKDIVEHAVEVVTP 944

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              +     +++    +     AD  RL Q+   +L+NA  ++ K   + L   + +    
Sbjct: 945  YANRLKHTVQINLPEQPIHLFADPARLAQVLGNLLNNACKYTPKSGFISLTVTQSDEQVH 1004

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVS----- 773
             SVK+NG  I ++M   VF+ F   + H  Q   G+G+GLS+V+  + +HGGHV+     
Sbjct: 1005 ISVKDNGLGIEQEMLNQVFDLFTQVDQHLEQSEGGLGIGLSLVQRLVEMHGGHVNCISDG 1064

Query: 774  ISSSDEGVTTINCR 787
            +    E + ++ C+
Sbjct: 1065 LGRGSEFIVSLPCK 1078


>gi|324326528|gb|ADY21788.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 385

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A   N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGNDGDYIDITAYESNNMIAIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 375


>gi|325285506|ref|YP_004261296.1| histidine kinase [Cellulophaga lytica DSM 7489]
 gi|324320960|gb|ADY28425.1| histidine kinase [Cellulophaga lytica DSM 7489]
          Length = 735

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 12/234 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K+EA+ KA E K +F+  VS+ELR+PL  + G T+LL      +    Q ++++ +  S 
Sbjct: 355 KDEAV-KAMEAKTNFLSTVSHELRTPLYAVTGLTNLLLEE---NPTENQKEHLKSLKFSG 410

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLN +NDIL +  +DA  ++       L   + +V  S+      NN ++ ++ D K+
Sbjct: 411 DYLLNFINDILQVNKIDAQKLETLQIEFSLRKTIKDVIDSLQQSAKSNNTKLNLVIDKKI 470

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPE 732
             + + D  ++ QI   ++ NA+ F+  G   +    LK   D     F VK+ G  I  
Sbjct: 471 SRAHLGDPIKISQILINLIGNAIKFTKNGEVTVTINELKKVEDICTIYFEVKDTGIGISN 530

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           ++ +++F+ F   + +  R   G GLGL+IV++ +NL G  + + S+ +GV +I
Sbjct: 531 ELQENIFDSFEQGSIQINREYGGTGLGLTIVKNLLNLFGSTIHLEST-KGVGSI 583


>gi|301166213|emb|CBW25788.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 936

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 127/245 (51%), Gaps = 13/245 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYV 610
           E  + E+ + L  A+E+K++F+ ++S+E+R+PL  I+G + LL       +  K++ +Y+
Sbjct: 548 EAKVRERTKKLIHANEVKSNFLANMSHEIRTPLNGILGISSLL----YERMEKKENIEYL 603

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  SS  LL ++NDILD + +++  ++L      L+  L ++K  + +     N +I+
Sbjct: 604 NIIKRSSEDLLQIINDILDFSKIESDGIELESLPFDLHKELEDIKNLMISSSTSQN-KIE 662

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
           +  D  L   + +DR R+ QI   ++ NA  F++ G   I    L ++++  +    VK+
Sbjct: 663 IFWDNDLTKVYTSDRLRIRQILINLIGNANKFTTNGKIEITVKELSSSQEISNLQIIVKD 722

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP     ++F  F        RR  G GLGLSI ++   + GG ++  S +   TT
Sbjct: 723 NGIGIPATSQSNIFKSFTQADISTTRRFGGTGLGLSISKALAEIFGGDITFESEEGKGTT 782

Query: 784 INCRI 788
               I
Sbjct: 783 FTFSI 787


>gi|292492033|ref|YP_003527472.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580628|gb|ADE15085.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 788

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 34/292 (11%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           S+  +  +I PL ++Q  L        ++T+    +  L  + E L + D  K+ F+  +
Sbjct: 351 SEVTISLTISPLQDSQGRLIGASKIARDITEYKHQQEQLRRQAELLTETDRRKDEFLATL 410

Query: 577 SYELRSPLTNIIGFTDLLKT--------SKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ELR+PL  I     +LK          K  S++ +Q Q+          L++LV D+L
Sbjct: 411 AHELRNPLAPIANSLQILKQVGNNPEALEKAVSISERQLQH----------LVHLVEDLL 460

Query: 629 DLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D++ +  G ++L    + L+ ++    E+ +S   K  E+ + ++V     L    AD  
Sbjct: 461 DVSRITRGKIQLRKEPVTLDTIIKSALEISRS-HIKAGEHTLCVEVPETQVL--LQADLT 517

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q  S +L NA  ++  G  + L A  +N   + +V+++G  I +++   +F+ FV  
Sbjct: 518 RLAQAVSNLLINAAKYTPPGGHIKLTARCENQQVVIAVQDDGIGIAQELLPRIFDMFVQA 577

Query: 746 AHRG--QRRGVGLGLSIVESFINLHGGHVSISSS--DEGVT-TINCRIPSKE 792
              G     G+G+GL +V+  + LHGG    +S   D+G T TI   + S+E
Sbjct: 578 ERPGGYAPGGLGIGLPLVKGLVELHGGQAEAASPGLDQGCTFTIRLPLDSEE 629


>gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1205

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 12/216 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+E+R+P+  IIG + L LKT     L+  Q  Y++ +  S+  LL L+NDI
Sbjct: 481 KSDFLANMSHEIRTPMNAIIGMSYLALKTD----LSKAQRNYIQKVKLSADSLLGLINDI 536

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           LD + ++AG + +      L ++L+ +   +  +  E  + + +  D  +  + V D  R
Sbjct: 537 LDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTALVGDPLR 596

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF 742
           L QI   + +NA+ F+ +G   +  A   +D  D    FSV ++G  +  + C  +FN+F
Sbjct: 597 LGQILINLANNAVKFTEQGEIKVSIALEKKDGNDITLKFSVTDSGIGMTPEQCNKLFNKF 656

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                   R+  G GLGL+I +    L GG + ++S
Sbjct: 657 TQADSSTTRKYGGTGLGLAISKELCQLMGGDIGVTS 692


>gi|239908871|ref|YP_002955613.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798738|dbj|BAH77727.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1069

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 118/253 (46%), Gaps = 13/253 (5%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P    +  F ++T+  R ++ L +  +   +A   K +F+  +S+E+R+PL  +IG +D 
Sbjct: 524 PTISVVWAFDDITEEKRRQQHLEQARDQAEEASRAKGAFLAVMSHEIRTPLNAVIGLSDA 583

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L     G    +Q  ++  I  S+  LL +VNDILD + ++AG + L         L+ E
Sbjct: 584 LLE---GQAAPEQIDHLRAIRESAGHLLGVVNDILDFSKIEAGKLVLERRHFDPRALVAE 640

Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
             +++     +  + +   I+     +   D  RL QI   +L NA+ F++ GS  +   
Sbjct: 641 ALRAVELVASQKRLALSATIAPNVPAALRGDPGRLRQILLNLLGNAVKFTAAGSVAVTVE 700

Query: 710 -LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
            + A +     I    +V + G  +       +F RF     +  RR  G GLGL+I + 
Sbjct: 701 TVPADQTPAGRIGLAVAVTDTGIGLDPTRASELFERFNQGPGKAARRFGGTGLGLAISKE 760

Query: 764 FINLHGGHVSISS 776
            +   GGH+ ++S
Sbjct: 761 LVERMGGHIGVTS 773


>gi|209522685|ref|ZP_03271243.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496734|gb|EDZ97031.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1263

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 124/236 (52%), Gaps = 15/236 (6%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            AL E   A   A+  K++F+ ++S+ELR+PL  I+GF+ L+  + +    ++ SQ +  I
Sbjct: 785  ALEEARRAADAANRAKSTFLANMSHELRTPLNAILGFSQLMSDNPIF---AEGSQELAII 841

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + S   LL L+NDILDL+ ++AG + L  +   L+ LL  +++    K    +I + +  
Sbjct: 842  NRSGEHLLELINDILDLSKIEAGKITLEMNHFDLHRLLETLEEMFKLKAAHKDIVLNINR 901

Query: 674  DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGDFI---FS 722
               L  + + D ++L Q+   +L+NA+ F++ G   +        K A  + + +   F 
Sbjct: 902  PLDLPRYLLGDEKKLRQVLINLLANAIKFTTAGEVTLYTKTLPTPKEAHTDSNTVLMQFI 961

Query: 723  VKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            V++ G  I      ++F+ FV +   +  + G GLGL I   F+ L GG +++ S+
Sbjct: 962  VEDTGPGISPQEIDALFDAFVQTETGKYSQEGTGLGLPISRKFVQLMGGDITVDST 1017


>gi|189464191|ref|ZP_03012976.1| hypothetical protein BACINT_00528 [Bacteroides intestinalis DSM
           17393]
 gi|189437981|gb|EDV06966.1| hypothetical protein BACINT_00528 [Bacteroides intestinalis DSM
           17393]
          Length = 479

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 118/216 (54%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++G+LN +Q Q  + I  ++  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKSIKENADRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            +  ++L++  V+AG +++        +L+    ++   +  +  I+I+V   D K+   
Sbjct: 311 GITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVEYPDEKMPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   V++ A  ++G     V++ G  I     +S+F+
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKHEDGIIEMYVQDFGKGIDPRYHQSIFD 430

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 431 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 465


>gi|307727473|ref|YP_003910686.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307587998|gb|ADN61395.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 749

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 141/268 (52%), Gaps = 21/268 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEA--------LRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +L+ V VT  VRA   L E++ A        LR+A+  K+ F+  + +ELR+PL  I+  
Sbjct: 331 ILSAVEVTGYVRARETL-ERSRADREALLSELRQANGAKDEFLAMLGHELRNPLAPIVSA 389

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L+  S+ GS +S + + V  I      LL LV+D+LD++ +  G ++LN   I + ++
Sbjct: 390 LELM--SRHGSDSSSRERAV--IQRHVDHLLRLVDDLLDVSRIIRGNVELNRQLIDVREV 445

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + +  +  +  M +   R+K+  D  L   +AD  RL Q+ S +L NA  ++  G  + +
Sbjct: 446 VEKAVEMTSVLMEQRAHRLKLDVDPTL-QCMADPTRLAQVISNLLINAGKYTEAGGEITV 504

Query: 711 KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            AA  + + I   V++NG  I  D+   VF+ F        R   G+G+GL++V++F+ L
Sbjct: 505 SAAGSDANTIRIGVRDNGIGIAPDVLPRVFDTFYQGKQTIDRAEGGLGIGLALVKNFVKL 564

Query: 768 HGGHVSISSSDEG----VTTINCRIPSK 791
           HGGHV  +S   G     T +  R PS 
Sbjct: 565 HGGHVEAASDGPGRGSQFTVVLPRAPSP 592


>gi|224500462|ref|ZP_03668811.1| hypothetical protein LmonF1_12654 [Listeria monocytogenes Finland
           1988]
          Length = 459

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 125/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEY 612
           + T+    L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  
Sbjct: 224 SFTKMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTV 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +T L +L   +L LA++D          + L     ++ Q       E  + I + 
Sbjct: 281 LSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL- 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D    ++  D + L Q++S +L+NA+ F+ +   + +    +  +    V+++G  I +
Sbjct: 340 -DLADVNYTGDAELLYQVWSNLLTNAIKFTPQDGNIQIHLYEEGTNVFVEVQDSGVGISK 398

Query: 733 -DMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            DM K +F+RF  +N  R +  G  GLGLSI +  I LH G V++ SS E  TT   ++P
Sbjct: 399 VDMTK-IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLP 457


>gi|15614483|ref|NP_242786.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174538|dbj|BAB05639.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 548

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 130/254 (51%), Gaps = 18/254 (7%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++TD V  E+ + + NE       +       +++E+R+PLT IIGF +LLK      
Sbjct: 302 FRDITDRVELEQQVIQ-NEKFSAIGRLSAG----LAHEIRNPLTPIIGFVNLLKNE--SH 354

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ K  QY+  +S     +  LVND + ++  +   +K       L+ L+ +V + + ++
Sbjct: 355 LDEKAKQYLRIMSDELERVRKLVNDFVIVSKPEPPELK----KTSLHTLVEQVIRFMESQ 410

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              +N++++V  S  +    + D  ++ Q+   +L+NAMD   +G T+ ++  +D G+ +
Sbjct: 411 GSLHNVQMEVNHSIDETDELLVDASQMKQVLINLLTNAMDAMERGGTIRVETGKDLGNGM 470

Query: 721 FSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           FS+K  + G  + ED    +FN F +     +  G+GLGLSI    I  HGG +++ S  
Sbjct: 471 FSIKVQDEGCGMSEDQLNQLFNPFFTT----KDDGLGLGLSICYRIIKNHGGTINVVSQQ 526

Query: 779 EGVTTINCRIPSKE 792
              +T    +P KE
Sbjct: 527 GEGSTFEILLPVKE 540


>gi|109896835|ref|YP_660090.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109699116|gb|ABG39036.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1045

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A  +K+ F+ ++S+E+R+PL  I+GF+  L+    G  ++ +   +  I+A++  L+ +V
Sbjct: 428 ASNVKSQFLANMSHEIRTPLNAILGFSKELQQ---GDFSADKRDQINIINAAADNLMTIV 484

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND+LD++ ++AG +++N     +N+LL E+   +A   H   +      +      + D 
Sbjct: 485 NDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHLKGLEFVYDIEPLPLKLIGDS 544

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVK--NNGSSIPEDMCKSVFN 740
            R+ QI + +L NA+ F+  G   +  + +  ++G F  ++K  + G  I  +  + +F 
Sbjct: 545 YRIRQILNNLLGNALKFTDTGHIGLAASGKVLEHGIFELNIKIEDTGIGISREDKRKLFT 604

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F  V +A     +G GLGL I +  + L  G +S+ SS    +T N  +
Sbjct: 605 AFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLSLQSSPGQGSTFNVTV 654


>gi|66813420|ref|XP_640889.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74855522|sp|Q54U87|DHKA_DICDI RecName: Full=Hybrid signal transduction histidine kinase A
 gi|60468777|gb|EAL66777.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2150

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 136/263 (51%), Gaps = 19/263 (7%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++T     +R + EK EA  +A++ K++FV  VS+E+R+PL+ +IG +DLL  +   
Sbjct: 1360 TLRDMTSRKDMQRLILEK-EAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLET--- 1415

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +L+ +Q  YV+ I  SS  LL ++NDILD + +++  +K+      + +    V   ++ 
Sbjct: 1416 NLSEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLSV 1475

Query: 661  KMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
              +++ +I ++V  +     F  D  R+ Q+   +LSNA+ F+S+G  +   +  D+   
Sbjct: 1476 AANDDVDILLRVPPNVPRIIF-GDAMRMRQVLLNLLSNAIKFTSRGHVLTDISVDDSIPP 1534

Query: 719  ---------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-N 766
                        ++++ G  IP+ +  S+F  F    +   R+  G GLGLSI +  I  
Sbjct: 1535 TNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSITKRLIEE 1594

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            + GG + +SS     +   C IP
Sbjct: 1595 VMGGTIQVSSIVGQGSKFKCIIP 1617


>gi|298248783|ref|ZP_06972588.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551442|gb|EFH85308.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 981

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 17/241 (7%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+ELR+PLT +      L+T  +     K SQ+ E  +A S 
Sbjct: 747 NSARKELEQRKDDFINMASHELRTPLTVV-----KLQTHLVHKRLEKHSQH-EAATALSR 800

Query: 619 I------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L  L+ ++LD++ +  G +K  +  + L++LL E+  ++      + I   V+
Sbjct: 801 VERPIEQLERLIAELLDVSQMQTGRLKYIWERVDLDELLREIADTMQRMSPSHTI---VV 857

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                 S   DR RL Q+F+ +LSNA+ +S    TV ++ +         V+++G  IP 
Sbjct: 858 RGTVQTSVTGDRDRLRQVFTNLLSNAIKYSPNAKTVEVELSASEEAVTIRVQDHGLGIPR 917

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  K +F RF            G+G+GL IV   +  HGG +++ S     +T    +P 
Sbjct: 918 EKHKKIFERFYRATGLSHETIPGLGMGLYIVAEIVKGHGGTITVESDVGKGSTFTVTLPR 977

Query: 791 K 791
           K
Sbjct: 978 K 978


>gi|291568216|dbj|BAI90488.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
          Length = 1262

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 126/248 (50%), Gaps = 15/248 (6%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            AL E   A   A+  K++F+ ++S+ELR+PL  I+GF+ L+  + +    ++ SQ +  I
Sbjct: 784  ALEEARRAADAANRAKSTFLANMSHELRTPLNAILGFSQLMADNPIF---AEGSQELAII 840

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + S   LL L+NDILDL+ ++AG +        L+ LL  +++    K    +I + +  
Sbjct: 841  NRSGEHLLELINDILDLSKIEAGKITFEIHPFDLHRLLETLEEMFKLKAANQDIILTINR 900

Query: 674  DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGDFI---FS 722
               L  +V  D ++L Q+   +L+NA+ F+  G   +        K A  + + +   F 
Sbjct: 901  PIYLPRYVLGDEKKLRQVLINLLANAIKFTIAGEVTLYTKTLPTPKDAETDSNTVLMQFM 960

Query: 723  VKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G  I  +   ++F+ FV +   R  + G GLGL I   F+ L GG +++ S+    
Sbjct: 961  VEDTGPGISSEEINALFDAFVQTETGRYSQEGTGLGLPISRKFVKLMGGDITVDSTRGVG 1020

Query: 782  TTINCRIP 789
            +  +  IP
Sbjct: 1021 SKFSFEIP 1028


>gi|254292589|ref|YP_003058612.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
 gi|254041120|gb|ACT57915.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
          Length = 943

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 119/242 (49%), Gaps = 18/242 (7%)

Query: 552 ERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ER + E+    R A E        K+ F+  +S+E+R+P+  ++   ++L  +   +L+ 
Sbjct: 255 ERTVEERTHDYRMAKEDAEAANAAKSDFLATMSHEIRTPMNGLLVMAEMLSAA---NLSM 311

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +  +Y E IS S   LL ++NDILDL+ +++G + L  +    + ++ ++      K   
Sbjct: 312 RHRRYAEIISRSGKSLLTIINDILDLSKIESGKLDLETAPFEPDAMVEDIACLFWEKARS 371

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI- 720
           NN+ I   IS     S + D  RL Q+ + +++NA+ F+ KG   I    R   NG  + 
Sbjct: 372 NNVEIATYISPNTPQSILGDVTRLNQVVTNLVNNALKFTEKGGVEIRVDGRLNKNGQRVR 431

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V + G  IP D    +F  F        R+  G GLGL++ +  ++  GG V ++S
Sbjct: 432 LRIDVIDTGIGIPADRLDQIFEAFSQADQSTTRKFGGTGLGLAVCKRLMHAMGGDVKVAS 491

Query: 777 SD 778
           ++
Sbjct: 492 AE 493


>gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 155-74]
          Length = 918

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|153826164|ref|ZP_01978831.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-2]
 gi|149740105|gb|EDM54270.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-2]
          Length = 1146

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L S +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLAD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIVVEDTGCGMTQMQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIEVKSEFEQGTQIQVNLP 841


>gi|24114070|ref|NP_708580.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
           301]
 gi|30064131|ref|NP_838302.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
           2457T]
 gi|28558062|sp|P59342|BARA_SHIFL RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|24053197|gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. 301]
 gi|30042387|gb|AAP18112.1| sensor-regulator [Shigella flexneri 2a str. 2457T]
 gi|281602146|gb|ADA75130.1| Signal transduction histidine-protein kinase barA [Shigella
           flexneri 2002017]
 gi|313647846|gb|EFS12292.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 2a str. 2457T]
 gi|332753502|gb|EGJ83882.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 4343-70]
 gi|332753638|gb|EGJ84017.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-671]
 gi|332754699|gb|EGJ85065.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 2747-71]
 gi|332765737|gb|EGJ95950.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella flexneri 2930-71]
 gi|333000195|gb|EGK19778.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-218]
 gi|333015336|gb|EGK34676.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-304]
          Length = 918

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|300865045|ref|ZP_07109872.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300336982|emb|CBN55022.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1122

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 26/265 (9%)

Query: 552  ERALTEKNEALRK----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +R L E+ + + +    A++ K++F+ ++S+ELR+PL  IIG++DLLK         +  
Sbjct: 858  QRKLAEEFQKVAQSAVAANQAKSAFLANMSHELRTPLNAIIGYSDLLKEDAEDLGAEEFI 917

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
              ++ I  +   LL L++DILD++ ++AG M+L        DL+ EV  ++   + +N+ 
Sbjct: 918  SDLDRIQRAGKHLLGLISDILDISKIEAGRMELYLENFNPVDLIEEVIATVEPLVMKNSN 977

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------NGD 718
            +++V     L    AD  +  QI   +LSNA  F+  G T+ +   +D         NGD
Sbjct: 978  KLEVSFGSNLDEMYADPTKTRQILLNLLSNAAKFTKDG-TITITLTKDEKVGNEEIFNGD 1036

Query: 719  ----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                       +F V + G  +     + +F  F+       R+  G GLGL+I   F  
Sbjct: 1037 IESEGDYLCFLLFQVADTGIGMSATQLEHLFQPFMQGDTSTTRQYGGTGLGLAISRHFCL 1096

Query: 767  LHGGHVSISSSDEGVTTINCRIPSK 791
            + GG + + S     +    R+P K
Sbjct: 1097 MMGGDIEVESKLGSGSVFTVRLPVK 1121


>gi|258623619|ref|ZP_05718612.1| sensor protein TorS [Vibrio mimicus VM573]
 gi|258584107|gb|EEW08863.1| sensor protein TorS [Vibrio mimicus VM573]
          Length = 968

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 117/216 (54%), Gaps = 7/216 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL+ +   SL S Q  YV+ I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLQET---SLTSTQQHYVQVINRSGRSLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +ND+LD + ++AG ++++ +   L  L+ E  + + ++  E  I +     D     +  
Sbjct: 522 LNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVTRYWQG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+ + ++ N + F+ +G   I  +    G  I F+V+++G  I E    S+F+ 
Sbjct: 582 DEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDLEGQGIRFAVEDSGIGIAEQDQASLFDA 641

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           F + A  G+R+ G GLGL+I    +   GG + +SS
Sbjct: 642 F-TQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSS 676


>gi|237746473|ref|ZP_04576953.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377824|gb|EEO27915.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 853

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 21/254 (8%)

Query: 539 MLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           ++T  ++ D ++ E    +ALTE  EA + A+E K+ F+  +S+++R+P+  IIG T + 
Sbjct: 295 LMTLRDIHDMLKKEEQHRQALTEAFEAAKSANEAKSHFLSRMSHDMRTPMNAIIGLTTIA 354

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE- 653
           K     +   K    +E I  SS  LLNL+N++LD   +++G   L      L+ L+ + 
Sbjct: 355 KNHPGDT--GKIRDCLEKIDTSSQHLLNLINEVLDTCRIESGKFFLEEKPFTLSGLIGDT 412

Query: 654 ---VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
               + +I  + H   + ++ +      +   D QR+ +IF  ILSNA+ ++  G  +  
Sbjct: 413 LAMTRPAIQRQKHTLRVNVRQLEH---ETIKGDPQRIQEIFLNILSNAIKYTPDGGVITW 469

Query: 711 ------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
                  A R  G + F  ++NG  + ++  K +F  F    ++     +G GLG++I  
Sbjct: 470 TISESEAAIRGVGCYRFVFEDNGIGMSDEFRKKIFEPFEREKDSRTNHIQGTGLGMTIAL 529

Query: 763 SFINLHGGHVSISS 776
           +   L  G + + S
Sbjct: 530 TIARLMNGSIDVES 543


>gi|229589127|ref|YP_002871246.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229360993|emb|CAY47855.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 989

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 8/238 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  V     L +  +    A+E K  F+  +S+E+R+PL  ++G  +L+    L  ++
Sbjct: 480 DITRHVDETLQLDQARQEATAANEAKTVFLATMSHEIRTPLYGVLGNLELMA---LTDMS 536

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q QY+E I  SST+L  L++++LD++ +++G M +  +      L+ E     A    
Sbjct: 537 ERQRQYLEIIQGSSTVLFQLISNVLDVSKIESGQMAVEAAPFSPRQLVEESVLGFAATAR 596

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGD 718
              ++I    D ++    + D  R+ QI   +L NA+ F+  G       +     D   
Sbjct: 597 NKGLQIDAEIDPQVPLQLLGDAGRIRQILHNLLGNAIKFTESGRVRLRLTVQALLEDEVA 656

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             + V + G  IP+   + +F  F   A      G GLGLSI      L GG + + S
Sbjct: 657 LQWQVTDTGVGIPDKALEQLFKPFYQVAGGQDGNGAGLGLSICSRLSELMGGTMRVVS 714


>gi|229167896|ref|ZP_04295627.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621]
 gi|228615536|gb|EEK72630.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621]
          Length = 448

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 10/234 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ D+++  FV +VS+E +SPL++I GF+  L++  +     ++ +Y++ I   S  
Sbjct: 220 KSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSE--EERKRYLKIIEGESKR 277

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++  + D    
Sbjct: 278 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPD---- 333

Query: 679 SFVADRQRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            F+   + LL Q++S I +N++ FS+ G T+           + S+ +NG  + ++    
Sbjct: 334 IFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEQEEMDR 393

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V  A      G GLGLSIV+  + LH G VS+ S+    TT+   +P
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELP 447


>gi|153004403|ref|YP_001378728.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027976|gb|ABS25744.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 394

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 29/247 (11%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQSQYV 610
           ER ++E N  +R    +  +FV  + ++LR+PL  ++ G T  L+ S     + K   ++
Sbjct: 136 ERLISELNRTVR----LSETFVAVLGHDLRNPLGAVVAGATLALRRSD----DPKVRGHL 187

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL---NDLLNEVKQSIAT-----KM 662
           E +  S+  +  +V  +LD++ V     +L     ++   +DL   V+Q+ A      + 
Sbjct: 188 ERVLRSARRMARMVEQLLDVSRV-----RLGRGIPIVRDASDLCELVRQAAAETEPTHRQ 242

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           H   +R+    +G+      DR RL Q+ + +L+NA + S  GS V +         + +
Sbjct: 243 HRFELRLPPRCEGEW-----DRDRLAQVLTNLLANACEHSEPGSVVTVALEDGPERAMVT 297

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V N G  IP ++  SVF+ F S +  G  RG+GLGL I       HGG +S+ S+D   T
Sbjct: 298 VHNPGPPIPPELLPSVFDAFASGSEDG--RGLGLGLYIAREIALAHGGDISVDSADGRGT 355

Query: 783 TINCRIP 789
           T +  +P
Sbjct: 356 TFSVTLP 362


>gi|77918111|ref|YP_355926.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77544194|gb|ABA87756.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 481

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 117/233 (50%), Gaps = 4/233 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            + L  A++ K+ F+ HVS+EL++PL +I   T+LL   ++G LN +Q +    +  +  
Sbjct: 243 RQRLDAAEKDKSKFISHVSHELKTPLASIREGTELLVEEEVGPLNDQQREIAWILRKNGV 302

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L++++L  + + A I   +   +  + L+  +  +    + + N+ +K+  D    
Sbjct: 303 HLHKLIDNLLGFSRMQAKISSFHGIDVDFSRLIKGIVAAQRPAILKKNLDLKL--DVVEL 360

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               DR+RL  +   +LSNA+ ++  G T+ +   R +   +F V ++G  IPE   +++
Sbjct: 361 QLHGDRERLRNVVDNLLSNAVKYTPVGGTIQVVLRRVDNQALFEVADSGPGIPESERQNI 420

Query: 739 FNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F   S    G  +G G+GLSIV+ ++  HG  + +  S  G       +P
Sbjct: 421 FKPFYQGSAPMVGPVQGTGIGLSIVQEYVRDHGAGIEVLESSLGGACFRVTLP 473


>gi|326791037|ref|YP_004308858.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326541801|gb|ADZ83660.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 482

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 116/227 (51%), Gaps = 4/227 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L    E L K +E + SF+ +VS++LRSPLT+I GF   +    +     KQ +Y++ +
Sbjct: 240 SLNHMAEELDKIEENRRSFIANVSHDLRSPLTSIQGFVTAMLDGTISP--EKQERYLKIV 297

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + +  ++ + N IL+L  ++     L+ +   +N ++     S+  +  E  + +  + 
Sbjct: 298 LSETHRMIGMTNTILELNKMEESKDALHKTAFNINSVIERNFASLEKRALEKGVSLVKMF 357

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +      VAD   + ++   +L NAM F  +  T+ ++ A  +     ++ N+G  IP++
Sbjct: 358 EADPPYVVADLDGISRVVQNLLDNAMKFVEQDGTIEVRTALKDDKIWVAICNSGPPIPKE 417

Query: 734 MCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSD 778
               ++NRF   +  RG  +RGVGLGL IV+  I  HG  V + S +
Sbjct: 418 QQSEIWNRFYKGDRSRGMDKRGVGLGLVIVKEIIKQHGEVVGVESEE 464


>gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
           74-1112]
          Length = 918

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
 gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
          Length = 918

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|156932728|ref|YP_001436644.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530982|gb|ABU75808.1| hypothetical protein ESA_00517 [Cronobacter sakazakii ATCC BAA-894]
          Length = 919

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTD----LTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + +      + 
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+   V+ K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|18450332|ref|NP_569203.1| hypothetical protein pli0050 [Listeria innocua Clip11262]
 gi|16415833|emb|CAC42048.1| pli0050 [Listeria innocua Clip11262]
          Length = 888

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 126/240 (52%), Gaps = 16/240 (6%)

Query: 548 SVRAERALTEKNEALR----------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT- 596
           +V AE AL  + E  R          + ++++ + ++ +S++LR+PLT+I G   +LK  
Sbjct: 629 AVLAESALALEKEKFRVQEQIISLRMQQEQVRTNLLRAISHDLRTPLTSISGNAGVLKAN 688

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S +     KQ+ Y + I   S  L+NLV ++L +  +D G   +N    +++++++E  +
Sbjct: 689 SHILEEKQKQNLYND-IYDDSIWLINLVENLLSITRLDEGSSNINMQPDLIDEVISEALR 747

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            I  K  E NI +++  +  + +   D Q ++Q+   I+ NA+ ++  GS + + A +D 
Sbjct: 748 HIDRKSIEYNISMEIQDEDLIVNI--DSQLIMQVIINIVDNAIKYTPPGSKICIVAKQDM 805

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 +K+NG  IP+     +F+ F   +N +   RRG+GLGL +  S I  H G + +
Sbjct: 806 DSVCVEIKDNGEGIPDKEKDKIFDMFYTANNINADGRRGLGLGLYLCMSIIQAHQGEMYV 865


>gi|319651161|ref|ZP_08005293.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2]
 gi|317397143|gb|EFV77849.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2]
          Length = 468

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 121/239 (50%), Gaps = 6/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A    + +++K DE K  F+ +VS+ELR+P++ + G+++ L  S++      + +Y++ I
Sbjct: 228 AFNHMSSSIQKEDEKKKDFLANVSHELRTPISYVKGYSEAL-ISEMAESEEDRQKYLQLI 286

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  +  LV D+LDL+ +++   KL    + L  L+ +  +     + E N+ ++   
Sbjct: 287 LRESKRMERLVGDLLDLSKLESDEYKLEKMPLPLGQLIEDAIEKYKPILREKNLDLQYRL 346

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D ++     D  R+ QI   I+ N++ ++++G   I  +       +  +++ G  I E+
Sbjct: 347 DPEV-IINGDEGRIEQIIQNIMDNSIRYTAEGRISIRLSQEKEDKCVIEIEDTGIGISEE 405

Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  RF    ++G+ R   G GLGL+I E  + LH G +++ S     TT+   +P
Sbjct: 406 HLSKIKQRFY-RVNKGRTRSDGGTGLGLAIAEKLVKLHQGELTVLSELNKGTTVRIVLP 463


>gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|296159891|ref|ZP_06842712.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           Ch1-1]
 gi|295889874|gb|EFG69671.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           Ch1-1]
          Length = 1174

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 4/214 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ +V  +S+ELR+PL +I+G+  LL       L   +   V  I  S   LL LV
Sbjct: 715 ANRAKSRYVTGLSHELRTPLNSILGYAQLLLQGT-DELPPARRNAVATIYRSGEHLLALV 773

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           + +LD+A ++AG ++LN + I L D + ++   +  +  +  ++ +  + G++   V  D
Sbjct: 774 DGLLDVARIEAGKLQLNVTEISLPDFVAQLAAMLEPQATDKGLQFEFQTSGRMADVVRID 833

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +R+ QI   ++ NA+ F+S GS V ++A+       F + + G  +P    + +F  F 
Sbjct: 834 EKRVRQILINLIGNAIRFTSHGS-VKVRASYAWEAITFEIADTGPGMPASELERLFLPFE 892

Query: 744 SN-AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              A R    G GLGL+I      L GG++ + S
Sbjct: 893 RGAAAREHDHGAGLGLTICRLLTELMGGNLEVQS 926


>gi|294507653|ref|YP_003571711.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|294343981|emb|CBH24759.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 936

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 126/254 (49%), Gaps = 7/254 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKL 599
           T  ++T+  + ERAL E  +   +A ++K+S + ++S+E+R+PLT+IIGF +     +K 
Sbjct: 679 TIQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKE 738

Query: 600 GSL--NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             L  +S   +Y E I  S   LL  +  +L+L+ ++AG M+L    + L +    V + 
Sbjct: 739 LDLPDDSPLPKYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAEE 798

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +  E  + +++ ++       AD+  +  +   +LSNA+ ++  G  V L+  R+ G
Sbjct: 799 LRPRAEEKEVSLQLETEAAWAE--ADKGGVQILARNLLSNAVKYTEAGGRVRLRTYREEG 856

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  +  +  + +F  F   S     + +G G+GL++ +       G + + 
Sbjct: 857 AVAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSIDVE 916

Query: 776 SSDEGVTTINCRIP 789
           +     T I   +P
Sbjct: 917 TEKGEGTRITVWLP 930


>gi|163940331|ref|YP_001645215.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163862528|gb|ABY43587.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 385

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L  + I + +LL ++      ++ E NI  +     +    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQLQEANIECRPSFPSQKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A   N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAITYGNDGDHIDITAYESNNMITIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S D+  T     +P K
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 384


>gi|168700348|ref|ZP_02732625.1| two-component hybrid sensor and regulator [Gemmata obscuriglobus
           UQM 2246]
          Length = 475

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E++ A R+ DE    F+  +++ELR+PL  +     +LK    G  +++ +  V   S
Sbjct: 100 LAERDSAARRKDE----FLAMLAHELRNPLAPVRTTLHVLKLRHPGDRDTQTAVGVAERS 155

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  L++D+LD++ V  G + L    +   D++    +++  +  E ++ + +   
Sbjct: 156 VKH--LARLIDDLLDVSRVTLGKVGLRCEHMDAADVVRLATEAMGARFAEKHVALDIEVQ 213

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733
                   D  RL Q  + +L NA+ F+  G  V ++A  D G+   +V + G+ I PED
Sbjct: 214 SARLPVSGDAVRLEQAIANVLDNALKFTPPGGKVRVRAEADRGEAKVTVSDTGAGIAPED 273

Query: 734 MCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +   VF+ FV  A R   R   G+G+GL+IV+  + LHGG ++++S   G  TT    +P
Sbjct: 274 L-PHVFDLFV-QADRSLDRTVGGLGVGLTIVKGLVELHGGRIAVTSDGLGAGTTAVLHLP 331

Query: 790 SKE 792
             E
Sbjct: 332 LAE 334


>gi|145300169|ref|YP_001143010.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852941|gb|ABO91262.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1142

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 119/235 (50%), Gaps = 10/235 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E AL    E+   A   K  F+  +S+E+R+P+ +I+G  + L  +   SL+ +Q Q 
Sbjct: 537 QVEEALARAKESAEHAAGKKAEFLATMSHEIRTPMNSIVGMAEQLSFT---SLDLEQRQM 593

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I+  +  LL L+ ++LD + +D G M L  S+ +L +L++ V   I++++    ++ 
Sbjct: 594 VAIINQGAEGLLQLIGNVLDYSKLDVGKMALVPSSFLLRELIDSVLTMISSEVQRKGLQC 653

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGD-FIFSVK 724
            +  D ++G+ F  D  RL Q+   ++SNA+ F+ +G    ++ L    D     +  V+
Sbjct: 654 YLRVDDEVGARFTGDVLRLKQVLFNLVSNAIKFTERGFIELSIKLDVQTDGEQRLLIGVQ 713

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + G  +  +    +FN F     A      G GLGLSI  +   L GG + + S+
Sbjct: 714 DTGIGMSTEAQARIFNAFEQADGATTRSYGGTGLGLSISHTLAELMGGELRLESA 768


>gi|104780508|ref|YP_607006.1| sensor histidine kinase [Pseudomonas entomophila L48]
 gi|95109495|emb|CAK14196.1| putative sensor histidine kinase [Pseudomonas entomophila L48]
          Length = 404

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 28/296 (9%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV---TDSVRAERALT 556
           F   I + D    +L+GT           +I P+  +   L  + +    ++ R E+AL 
Sbjct: 117 FFGTICALDPNPTALKGT-----------AIQPMMESFARLLAIQIESEANAQRTEQALQ 165

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++    R   E++  F+  + ++LR+PL  I    +LL + +L   + KQ    ++I   
Sbjct: 166 KE----RAMAEVREQFIAVLGHDLRNPLFAITAGAELL-SQRLQ--DDKQLLIAQHILTC 218

Query: 617 STILLNLVNDILDLAT--VDAGIMKLNYSTIV-LNDLLNEVKQSIATKMHENNIRIKVIS 673
                 LV D+LD A   + AGI  LN      L + L  V   +     +  I +++  
Sbjct: 219 GQRATQLVRDVLDFARGRLGAGI-ALNLQPCHDLREALCHVASELQRVHPQRRIDLQI-- 275

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            G++     DR+R+ Q+ S +++NA+   +  S V + A+ +   F  SV N G+ IP  
Sbjct: 276 -GEINGLFCDRERITQLLSNLIANALAHGAPDSPVTVCASIEARTFNLSVHNQGTPIPAQ 334

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F  F        ++G+GLGL I       HGGH+ ++SS +G T  + R+P
Sbjct: 335 TLPLLFQPFTRPMSDTPQQGLGLGLYIASQIALAHGGHMEVASSVQGGTLFSLRLP 390


>gi|332701444|ref|ZP_08421532.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551593|gb|EGJ48637.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 697

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   + E+ L +  E    A   K+ F+  +S+E+R+PL  I+G T+LL     G  +
Sbjct: 289 DVTRIRQQEQMLRKAKEEAEMASRAKSEFLASMSHEIRTPLGGILGMTELLMARVAG--D 346

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S QS Y+E I  S+  LL ++NDILDL+ ++AG + L        + +  + +    +  
Sbjct: 347 SNQS-YLELIENSAMSLLGILNDILDLSKIEAGKVDLEPEEFEFREEMLTLAEPFRIQAE 405

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--- 718
           ++ +   V  D  +   +  D ++L QI   +LSNA+ F+ KG  T+    A   GD   
Sbjct: 406 KSGLSFDVRLDPAIPERMHGDLEKLKQILRNLLSNAVKFTVKGGVTLTTDLADKCGDQCR 465

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+V + G  IP    +S+F  F  + +       G GLGL+I +    + GG +S+ S
Sbjct: 466 LRFTVSDTGIGIPRHKQRSLFGMFEQLRDHMSKNCAGTGLGLAISKRLAGMLGGDISLES 525


>gi|315126944|ref|YP_004068947.1| two-component member protein [Pseudoalteromonas sp. SM9913]
 gi|315015458|gb|ADT68796.1| putative two-component member protein [Pseudoalteromonas sp.
           SM9913]
          Length = 1103

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 125/239 (52%), Gaps = 6/239 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++T     E++L +       A + K SF+ ++S+E+R+P+  IIGF+D+L  S    
Sbjct: 513 LVDITKRHEYEQSLKQAKYEAEAAAQAKQSFMANMSHEIRTPMNAIIGFSDILMDS---P 569

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN +Q + +  ++ ++  LL+L+NDILD A ++ G +++      L +LL+ +  +    
Sbjct: 570 LNKEQQKQIITVNNAARSLLHLLNDILDSAKLEKGKLEIQKVHFNLQELLDNIVSTFWLD 629

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
               ++++ + I+D     +  D  RL Q+ + ++ NA+ F+ +G   +    + N   +
Sbjct: 630 AKRKDLQLILKIADNVNPFYFGDDTRLRQVLTNLIGNAIKFTEQGHVTVSVTHKPNQPIL 689

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  I +   +++F  F        RR  G GLG +I +  + L GG +   S+
Sbjct: 690 FEVQDSGIGIEKGRLEAIFKPFEQADGTTTRRFGGTGLGTTISKQLVELMGGKIYAQST 748


>gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1103

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 121/247 (48%), Gaps = 18/247 (7%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VT    A+  L  ++E    A E K+ F+ ++S+E+R+P+  ++G   LL  S+L   
Sbjct: 413 IDVTKEKNAQANLRHESEIALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSESEL--- 469

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q   V  I  S+  LL+++NDILD + ++AG M L    + L  L+      +  + 
Sbjct: 470 NGEQKSMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQA 529

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS-----KGSTVILKAARDN 716
           +   I + +  D  L   + +D  RL Q+   ++ NA+ F+      KG  V + A  + 
Sbjct: 530 NNKGIELYLTYDASLPKVIMSDSVRLSQVLLNLVGNAVKFTDSTDEMKGK-VWVSATLNQ 588

Query: 717 GDFIFSV----KNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHG 769
            D    V    ++NG  + E+  + +F  F S A     R   G GLGLSI  S + + G
Sbjct: 589 HDIAPYVEIIIEDNGIGMTEEQIEKLFKAF-SQADTSTTRLYGGTGLGLSITRSLLEMMG 647

Query: 770 GHVSISS 776
           G + + S
Sbjct: 648 GDIHVDS 654


>gi|298492081|ref|YP_003722258.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
 gi|298233999|gb|ADI65135.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
          Length = 690

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 18/240 (7%)

Query: 552 ERALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           E  L E NE L  ++       + K+ F+ ++S+E+R+P+  +I   +LL    + +L+ 
Sbjct: 271 EAKLKETNEQLSISNIELASLTKAKSEFLSNMSHEIRTPMNGVICMAELLS---MKNLSE 327

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q   V+ I  S   LL ++NDILD + +++G ++L     +L D++  V + ++T+   
Sbjct: 328 EQQDIVQTIRDSGNALLVIINDILDFSKIESGNLQLEEHRFILRDIIKSVFKLLSTQAAT 387

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----D 718
            NI ++  I+     + + D  RL Q+   ++SNA+ F+  G   I   A  +      +
Sbjct: 388 KNIHLEYSINPDVPTNILGDATRLRQVLLNLISNAIKFTEHGHVSIAVLANKHQEDQKIE 447

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + S+K+ G  I  D    +F  F        R+  G GLGL+I +S +NL GG + + S
Sbjct: 448 LMISIKDTGIGIEHDRLNQLFQPFTQADTSISRKYGGTGLGLAISKSLVNLMGGKIWVES 507


>gi|56420908|ref|YP_148226.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380750|dbj|BAD76658.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 468

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   A  +  +A+ K DE K  F+ +VS+ELR+PL+ + G+++ L  + L     ++  Y
Sbjct: 222 RLAEAFNQMADAIAKEDERKREFLANVSHELRTPLSYMKGYSEAL-LAGLAKTKEEEKAY 280

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  +  LV D+LDLA ++   + L  + +    ++ +V  +      +  I +
Sbjct: 281 LRLIHRETERMERLVRDLLDLARLEGQSVPLERAPVAFAQVIEDVIATYEPIASQKRIEL 340

Query: 670 K------VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI 720
                  +I +G       D  RL Q+   +L NA+ ++ +G  V ++ +R     G+ +
Sbjct: 341 ACELDYDIIVNG-------DADRLEQVVRNLLDNAIRYTPEGGAVTVRLSRLSEAEGELV 393

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +++ G  IP+D    +  RF  V  A   +  G GLGL+IV+  ++LH G +   S  
Sbjct: 394 --IQDTGKGIPKDQLPLLGQRFFRVDRARTRKEGGTGLGLAIVKQIVSLHDGAIWFDSDL 451

Query: 779 EGVTTINCRIP 789
               T+  R+P
Sbjct: 452 GRGMTVFVRLP 462


>gi|163940905|ref|YP_001645789.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163863102|gb|ABY44161.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 458

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ D+++  FV +VS+E +SPL++I GF+  L++  +     ++ +Y++ I   S  
Sbjct: 230 KSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSE--EERKRYLKIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++  + D    
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPD---- 343

Query: 679 SFVADRQRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            F+   + LL Q++S I +N++ FS+ G T+           + S+ +NG  + ++    
Sbjct: 344 IFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEKEEMDR 403

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RF  V  A      G GLGLSIV+  + LH G+VS+ S+    TT+   +P
Sbjct: 404 IFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELP 457


>gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073]
 gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046]
 gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197]
 gi|89109572|ref|AP_003352.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. W3110]
 gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A]
 gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS]
 gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739]
 gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. DH10B]
 gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5]
 gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94]
 gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398921|ref|YP_002272251.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11]
 gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1]
 gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026]
 gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BW2952]
 gi|254037836|ref|ZP_04871894.1| sensor-regulator [Escherichia sp. 1_1_43]
 gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019427|ref|ZP_05433292.1| hybrid sensory histidine kinase BarA [Shigella sp. D9]
 gi|256024711|ref|ZP_05438576.1| hybrid sensory histidine kinase BarA [Escherichia sp. 4_1_40B]
 gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O26:H11 str. 11368]
 gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O157:H7 str. FRIK966]
 gi|291284115|ref|YP_003500933.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185]
 gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088]
 gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302]
 gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|83288337|sp|P0AEC7|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288338|sp|P0AEC6|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288339|sp|P0AEC5|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073]
 gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli]
 gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai]
 gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
           Ss046]
 gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197]
 gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K12 substr. W3110]
 gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           HS]
 gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E24377A]
 gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. DH10B]
 gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           SMS-3-5]
 gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii
           CDC 3083-94]
 gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli]
 gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11]
 gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli IAI1]
 gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli UMN026]
 gi|226839460|gb|EEH71481.1| sensor-regulator [Escherichia sp. 1_1_43]
 gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BW2952]
 gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. TW14359]
 gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O26:H11 str. 11368]
 gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088]
 gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185]
 gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302]
 gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972]
 gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli
           ETEC H10407]
 gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
 gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
 gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli
           3431]
 gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
 gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           G5101]
 gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           493-89]
 gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           H 2687]
 gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli
           EPECa14]
 gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli
           E128010]
 gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei
           53G]
 gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1357]
 gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli
           RN587/1]
 gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520]
 gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120]
 gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489]
 gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007]
 gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
 gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167]
 gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1044]
 gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1125]
 gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii
           3594-74]
 gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           UMNK88]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
 gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|307139472|ref|ZP_07498828.1| hybrid sensory histidine kinase BarA [Escherichia coli H736]
 gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
 gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|260599137|ref|YP_003211708.1| hybrid sensory histidine kinase BarA [Cronobacter turicensis z3032]
 gi|260218314|emb|CBA33302.1| Signal transduction histidine-protein kinase barA [Cronobacter
           turicensis z3032]
          Length = 919

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTD----LTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + +      + 
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL Q+ + ++ NA+ F+  G+   V+ K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O127:H6 str. E2348/69]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|254420553|ref|ZP_05034277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196186730|gb|EDX81706.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 605

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 15/243 (6%)

Query: 547 DSVRAERA-LTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           D+ +A +A L E+ EA R     A++ K++F+  +S+ELR+P+  ++G   LL  ++L  
Sbjct: 192 DAFQAHQAHLIEELEAARDKADAANDAKSNFLGVISHELRTPMNGVLGAAQLLSATRL-- 249

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               Q +Y+  I  S   LL+L+NDILD+  ++AG M      +V++DL   +      +
Sbjct: 250 -EGAQREYLSIIRNSGDNLLSLLNDILDMTKIEAGKMTFEVVDVVVDDLQRRISGPFEAQ 308

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
                +      +G + + V  D  R+ Q+   +LSNA+ F+  G    +   R   D  
Sbjct: 309 AEAKGLTFVSELEGDIPAVVRGDPLRVCQVVQNLLSNAVKFTDVGEIRYVVRGRRISDRR 368

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
             F F V ++G+ I     + +F  F        RR  G GLGL+I     N+ GG +S+
Sbjct: 369 VGFEFCVTDSGAGISPTDLERLFQPFTQVDASSTRRFGGTGLGLTIARRMANIMGGDISV 428

Query: 775 SSS 777
            SS
Sbjct: 429 DSS 431


>gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1364

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 15/244 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + + + + + +
Sbjct: 675 PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSL 734

Query: 663 HENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
               + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 735 SAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGEL 852

Query: 773 SISS 776
            + S
Sbjct: 853 EVES 856


>gi|320166405|gb|EFW43304.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864]
          Length = 1498

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 13/243 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++    R E AL E + + + A+E K+ F+ ++S+E+R  L+ I+G   LL+ ++L  
Sbjct: 393 FDDLAPKNRLESALLEAHRS-KHANESKSRFLANMSHEIRVWLSGILGMIHLLEGTQL-- 449

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +Q +++  I  S+ ILL ++NDILD + ++AG + +      + + +  V + +   
Sbjct: 450 -TEEQHEFLGTIKMSAQILLTVINDILDFSKIEAGQLTIERVEFDIFNTIEMVVELLYPS 508

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARD 715
               N+ ++   D ++ + V  D  RL QI   +LSNA+ F+ KG  V LK        +
Sbjct: 509 AGNKNLLLQCFIDPRIPTKVLGDPSRLQQILVNLLSNAIKFTKKG-RVFLKCTLENETLE 567

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           N   +F V + G  +  D    +F RF        R+  G GLGL I +S + L GG + 
Sbjct: 568 NATVLFEVHDTGIGLTPDTLARLFRRFSQEDASTTRKFGGTGLGLVISKSLVELMGGSIG 627

Query: 774 ISS 776
             S
Sbjct: 628 ADS 630


>gi|188991423|ref|YP_001903433.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733183|emb|CAP51381.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1146

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 12/238 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S++AE A   + E    A  +K+ F+  +S+ELR+PL  I+G++ L++        +K  
Sbjct: 744 SLQAETAARNQAE---HASRVKDEFLATLSHELRTPLNAILGWSRLMQADAFEP--AKLG 798

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  I  S+     +++D+LD++ + +G ++L      +  L     + +        I
Sbjct: 799 KGLVVIERSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPTAQARQI 858

Query: 668 RIKVISDGKL-GS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           R+++  D  L GS  F  D  RL Q+ + ++SNA+ F++    V +    +       V+
Sbjct: 859 RLEL--DAPLQGSLWFFGDAGRLQQVLTNLISNALKFTAPDGDVRVSLEVEEQRLRLCVR 916

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  I  D    VF+RF        RR  G+GLGLSI    I+LHGG +   S+ EG
Sbjct: 917 DTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLIDLHGGSLGAYSAGEG 974


>gi|162456717|ref|YP_001619084.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161167299|emb|CAN98604.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 553

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 15/225 (6%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K++F+ ++S+ELR+PL +I+GF  L++     SL  +  + +  I  S   LL LV
Sbjct: 75  ASRSKSAFLANMSHELRTPLNSILGFAQLVERDP--SLADRHRENLAVICKSGEHLLGLV 132

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDIL++A ++AG M L  +   L+D L+ + +  A +  +  + + V     +   V  D
Sbjct: 133 NDILEMAKIEAGRMTLVDAEFDLHDTLSGLSEMFAVEAQKRGLTLTVERAQDVPRHVHGD 192

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFI------FSVKNNGSSIPE 732
             +L Q+   +L NA+ F+ +GS  +  +AR      +G         F V + G  + +
Sbjct: 193 EGKLRQVLINLLGNALKFTPRGSVTLRASARRATGAHDGAAAGRVRVSFEVTDTGRGMAK 252

Query: 733 DMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                +F  F   A  R  R G GLGL I    + + GG + + S
Sbjct: 253 AELAELFEAFAQTATGRQSREGTGLGLHISRRIVRMMGGDIRVES 297


>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1564

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 117/248 (47%), Gaps = 28/248 (11%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            AL +  +    A+  K+ F+  +S+E+R+P+  +IG T LL  +   +L+++Q  +VE I
Sbjct: 1015 ALKQARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNT---TLDNQQRDFVETI 1071

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S   LL L+NDILD + ++AG ++       L   + E  + +A +  +  + +  + 
Sbjct: 1072 RSSGDALLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLF 1131

Query: 674  DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------------KAARDNGD 718
            D    +  V D  RL QI   +L+N + F+ +G  VI                + R N  
Sbjct: 1132 DPSTPNHIVGDVTRLRQILVNLLTNGVKFTEQGEVVIYVQDITDTDITQPETTSQRKNFT 1191

Query: 719  FI--------FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
             I        F V+++G  IP D    +F  F  V  +   +  G GLGL+I  S   + 
Sbjct: 1192 DIQNQRRLIQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRSLSQMM 1251

Query: 769  GGHVSISS 776
            GG + + S
Sbjct: 1252 GGRIWVES 1259


>gi|149375696|ref|ZP_01893465.1| two-component sensor histidine kinase protein, putative
           [Marinobacter algicola DG893]
 gi|149360098|gb|EDM48553.1| two-component sensor histidine kinase protein, putative
           [Marinobacter algicola DG893]
          Length = 1126

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 123/250 (49%), Gaps = 8/250 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R ++AL +  E    A+  K+ ++  +S+ELRSPL  I+G+  L++ 
Sbjct: 641 QTRLLTEEIVAHERTDQALQQAKEHAEAANGAKSRYLTGISHELRSPLNAILGYAQLMEN 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                 N K +  V  I  S   L +L+  +LD++ ++AG + L+   + ++ L+ ++  
Sbjct: 701 DTAIPDNRKDALGV--IRRSGEYLADLIEGLLDISKIEAGRLDLHRDEVRIDLLMEQLVH 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714
               +  E  +        +L   V  D +RL QI   +LSNA+ ++  GS ++ LK   
Sbjct: 759 MFRLQAEEKGLAFSYHGPTRLPELVTTDEKRLRQILINLLSNALKYTDNGSISLTLKYRS 818

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVS 773
              +  F++K+ G  I E+  + +F  F      GQ R G GLGL+I      + GG +S
Sbjct: 819 QVAE--FTIKDTGEGIAEENIERIFRPFERIRTPGQSRTGTGLGLTITRLLTEIMGGDLS 876

Query: 774 I-SSSDEGVT 782
           + S+  EG T
Sbjct: 877 VESTPGEGST 886


>gi|150392433|ref|YP_001322482.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149952295|gb|ABR50823.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 599

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 11/232 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K + ++  FV +VS+EL++PLT I  +T+ L     G++ +++   Q++  I   +  + 
Sbjct: 365 KLENMRKEFVANVSHELKTPLTTIKSYTETLLE---GAMENQELGKQFLNVIDNEADRMA 421

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIKVISDGKLGS 679
            LV D+L L+  D    K +   + LN ++ +  +  S++ K  E  +  K + +G   S
Sbjct: 422 RLVRDLLQLSNADYQQTKWDKKEVDLNYIVEKAVLNLSVSAKNKEQELNYKGLREGV--S 479

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  R+ Q+   ++SNA+ +++ G  + +            + +NG  IP++    +F
Sbjct: 480 VWADENRIEQVLLNVISNAIKYTANGGCIDVSLEETQNHATIKITDNGMGIPKEDLPRIF 539

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A   +  G GLGLSI +  I++H G + + S + G T +   +P
Sbjct: 540 ERFYRVDKARSREMGGTGLGLSIAKQIIDVHEGMIKVDSRESGGTAVLIELP 591


>gi|152965636|ref|YP_001361420.1| multi-sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
 gi|151360153|gb|ABS03156.1| multi-sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
          Length = 735

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 11/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L E    LR+ + +K+  +  VS+ELR+PLT+I G+ +LL+   LG +    +  + 
Sbjct: 481 ERLLGE----LREVESVKSDLLATVSHELRTPLTSIAGYLELLRDGALGEVPEDVAAVLG 536

Query: 612 YISASSTILLNLVNDILDLATVD---AGIMKLNYSTIVLNDLLNEVKQSI-ATKMHENNI 667
            +  ++  L +L+ D+L L+ V+   AG      +T  + DL+  V +++         +
Sbjct: 537 IVERNTDRLRSLIEDLLLLSRVEPLAAGPGAPVRTTTTVADLVAGVARTVQGGATRGGTL 596

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           R         G     D + L +    ++ NA+ FS  GS V L+     G     V++N
Sbjct: 597 RCTTPPADLTGLRTRGDAEHLHRAVLAVVDNAVKFSPVGSLVRLRVENHPGRVRIVVQDN 656

Query: 727 GSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP     +VF RF   SNA      G GLGL+I    + LHGG + + S +   TT 
Sbjct: 657 GMGIPAGETDAVFARFARGSNATALAVPGAGLGLTIARDLVRLHGGSLDLESVEGQGTTA 716

Query: 785 NCRIP 789
              +P
Sbjct: 717 RLELP 721


>gi|332876950|ref|ZP_08444703.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332685058|gb|EGJ57902.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 856

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 146/293 (49%), Gaps = 34/293 (11%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTD----------SVRAERALTEKNEALRK------ 564
           LS+S+++++       Q ML ++++T           ++RA RA ++ N  L++      
Sbjct: 281 LSESLIQHT------NQRMLLYLSITAIVLITVFLLMAIRAYRAKSKTNSELKRQKEQLE 334

Query: 565 --------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                   A + K  F  ++S+E ++PL+ I+G  + L      SL  +Q + +  I  +
Sbjct: 335 IVSKQLEEATQAKLLFFTNISHEFKTPLSLILGPVETLLAH--NSLTKEQQELLFLIKKN 392

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LL+L++++L+  + + G +K+ ++   L   L E+    + ++ +  ++ + I+D  
Sbjct: 393 SNRLLHLISEVLEFRSYENGKLKMYFTKGNLKRFLIELNTFFSDRIKQKKLKFQFIADEV 452

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D++++ +I+  +LSNA+ ++     +I+K  +++     SV N+ S IP+D   
Sbjct: 453 PFEITFDKEKVEKIYFNLLSNALKYTPISGEIIVKLQKEDDKVCLSVFNSDSYIPKDKQT 512

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            VF  F          G G+GL++V++ +  H G +SI S +   TT    +P
Sbjct: 513 EVFEHFYK--INPDSEGSGIGLALVQALVASHNGTISIESVENVGTTFYIYLP 563


>gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii
           5216-82]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863]
 gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509]
 gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_7v]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|238025637|ref|YP_002909869.1| ATP-binding region, ATPase-like protein [Burkholderia glumae BGR1]
 gi|237880302|gb|ACR32633.1| ATP-binding region, ATPase-like protein [Burkholderia glumae BGR1]
          Length = 895

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 23/258 (8%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    VT +   + AL + + A+R     K++F+  +S++LR+PLT+IIGF DL++ 
Sbjct: 420 QERLESAVVTRTRELQSALEQADGAMRA----KSNFLARISHDLRTPLTSIIGFADLIQA 475

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT---VDAGIMKLNYSTIVLNDLLNE 653
                   + ++    I  S+  +L +VND++D A     D    +  Y T  L D++++
Sbjct: 476 D-----GREDAERGRVIRRSANHMLGMVNDLIDYARGREADTLSPRPVY-TYALLDVVSQ 529

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
              ++A K   N   + V+ D  L   +  D QR+ Q+   +L NA  F+S G  V+   
Sbjct: 530 HGDALA-KRSANEFSLNVVGD--LPPIIELDEQRMHQVLDNLLDNAAKFTSHGRIVLTVS 586

Query: 710 ---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
                 AR   +  FS+ +NG  +     + VF  FV    +  R G+GLGLSIV+ + +
Sbjct: 587 ANRFDGARGRCNLRFSISDNGCGVAIADHERVFEPFVRVGEQNHRPGIGLGLSIVKLWTD 646

Query: 767 LHGGHVSISSSDEGVTTI 784
             G  ++  SS    TTI
Sbjct: 647 RMGASLTFDSSPGIGTTI 664


>gi|323340182|ref|ZP_08080446.1| two component system histidine kinase [Lactobacillus ruminis ATCC
           25644]
 gi|323092373|gb|EFZ34981.1| two component system histidine kinase [Lactobacillus ruminis ATCC
           25644]
          Length = 462

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           R+  +++  FV +V +EL++P+T I GF++ L     G+L+ K+  S++V+ I   S  L
Sbjct: 227 RRVAQMQRDFVANVGHELKTPVTAIRGFSETLLE---GALDDKETASEFVKIILEQSKQL 283

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLG 678
            +L+NDIL L+ +DA      +  I L   +  + Q     + E  I    K+  D ++ 
Sbjct: 284 TDLINDILSLSKIDASKGD-TFVKIKLRKFIERIVQQFEPAIGEKKISFIDKIAPDVEI- 341

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             V D ++L  I S ++ NA+ ++ KG ++ + A     ++ F +K+ G  I  +    +
Sbjct: 342 --VCDEKKLQHIISNLMQNAVRYNKKGGSIEVSAVIFENEWCFLIKDTGQGIKHEDLGRI 399

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF        +   GLGLSIV+ +++   G + ++S     T     +P
Sbjct: 400 FERFYRGDKSRSQEETGLGLSIVKEYVDSLSGMIDVTSVPNAWTEFMVTLP 450


>gi|218896059|ref|YP_002444470.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
 gi|218545392|gb|ACK97786.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
          Length = 896

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF--------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +    ++    + D           
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFNPIETTNLSHDMQSISKEWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNLG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|71906100|ref|YP_283687.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71845721|gb|AAZ45217.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 835

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 164/371 (44%), Gaps = 32/371 (8%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           + D+E +      +    +D + E   ++  + R+   N  +R+ + T  + L PG    
Sbjct: 309 RADMEKRLQDSQAMLRSAVDTIGEAFVIYDQNDRLAYCNEQYRAYYPTSADLLVPGKTFE 368

Query: 482 NI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPN 535
            I  A      Y E+ G  + A +       R      ++ L D     + E+     P 
Sbjct: 369 EIIRAGAERGQYPEAIG-RIDAWVAERLAVHRSGNSDLIQALDDGRWLRIREHKT---PE 424

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +   +++T       A+    EA   A+  K++F+  +S+E+R+P+  I+G   LL 
Sbjct: 425 GFIVGFRIDIT-------AVYAAKEAAEAANAAKSNFLAMMSHEIRTPMNGILGMAQLLL 477

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN--DLLNE 653
              L     + ++Y   I  S   LL L+NDILD + ++AG  KL +S +  +   L+ E
Sbjct: 478 LPDLS--KEEGNEYARTILNSGQTLLTLLNDILDFSKIEAG--KLEFSAVAFDPAQLVRE 533

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--L 710
                   + E  I I     G  G+ + AD  RL Q+ + ++SNA+ F+++G   +   
Sbjct: 534 TVTLFTGAVREKGIVIDTDCQGTGGARYRADSTRLRQMLANLVSNAVKFTTQGFVRVDAR 593

Query: 711 KAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
           +  RD G  +  FSV ++G  IP D    +F  F S A     R   G GLGLSIV    
Sbjct: 594 EINRDRGTALLEFSVSDSGIGIPVDKQSLLFKPF-SQADSSTTREYGGTGLGLSIVRRLA 652

Query: 766 NLHGGHVSISS 776
            + GG V + S
Sbjct: 653 EMMGGEVGVES 663


>gi|323700382|ref|ZP_08112294.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323460314|gb|EGB16179.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 471

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 113/230 (49%), Gaps = 2/230 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ + ++  FV  +S+E+R+PLT++    DL+ +   G +N KQ ++++     S  L 
Sbjct: 241 LRREERMRADFVAMLSHEIRTPLTSVREAVDLVGSGTFGEVNEKQKRFLDIAGQESERLS 300

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+  +L ++ ++A  + LN   + +  L+    + +       ++ ++   +  L +  
Sbjct: 301 DLLTRLLSVSRMEAEELHLNPERVDVAGLVESTVERLVPTARAASVTLESEVEPGL-AVR 359

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD   + Q+ + +  N + FS +G TV L A R   + +FSV ++G  IP D  + +F +
Sbjct: 360 ADPAHVRQVLTNLAGNGVKFSERGGTVRLIAERSGREVLFSVADDGPGIPVDEQERIFLK 419

Query: 742 FVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +      R    G GLGL+I    +  H G + + S      T    +P+
Sbjct: 420 YYREPGVRDSIDGAGLGLAIARRIVLAHDGRIWVESEPGRGATFRFTLPA 469


>gi|260439089|ref|ZP_05792905.1| putative response regulator receiver domain protein [Butyrivibrio
           crossotus DSM 2876]
 gi|292808401|gb|EFF67606.1| putative response regulator receiver domain protein [Butyrivibrio
           crossotus DSM 2876]
          Length = 1103

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 130/254 (51%), Gaps = 15/254 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++  + L E  +A  +A++ K++F+ ++S+++R+PL  IIG TD+     +  + ++Q  
Sbjct: 629 LKRNKQLVEATDAANRANKAKSNFLSNMSHDIRTPLNAIIGMTDM----AINHIENRQRV 684

Query: 609 Y--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           Y  +  I +S  ILL LVN+ILD++ +++G + +N S + L DL + V   +  ++ E +
Sbjct: 685 YSNLMKIKSSGRILLYLVNNILDMSYIESGKVVVNESPLSLADLFHSVATMVQGQIKEKH 744

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDF 719
           ++ KV +       V +D+  L +I   +L N++ ++ +   V L          D  ++
Sbjct: 745 LKFKVYAKNVKNEIVLSDKSTLNKIIINLLGNSIKYTKEYGLVSLSIEEQPTEITDLSNY 804

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I  + + G  + ED  K +F  F    +       G GLG+SI +  I + GG++ + S 
Sbjct: 805 IIKISDTGIGMSEDFVKRMFEPFERAKDTTISGVEGTGLGMSITKQLIEIVGGNIDVKSE 864

Query: 778 DEGVTTINCRIPSK 791
               +     IP K
Sbjct: 865 LNVGSEFTVTIPLK 878


>gi|225872588|ref|YP_002754043.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792000|gb|ACO32090.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 477

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 159/372 (42%), Gaps = 36/372 (9%)

Query: 425 LETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE  ++ L   Q E    +D + E V     D  +  SN        T   R++PG  IR
Sbjct: 134 LEQSFHALESKQRELAALLDSMQEAVIAVDADSLVSWSN--------TVMQRIAPGA-IR 184

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
              A      +     D+ A +  + +           +L D V E +  P P+   +  
Sbjct: 185 EGRALVQTIRDP----DVLACVQGALEHREIRSAKARSVLPDHVFEVNAAPTPDGGAVAV 240

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLG 600
             +VT               + +A+ ++  FV +VS+ELR+PLT+I G+ + LL T+   
Sbjct: 241 LHDVT--------------GIERAEIMRRDFVANVSHELRTPLTSISGYVETLLDTTP-- 284

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L     +++  I  ++  +  L  D+L LA V++G  +L+   I  + LL +  + +A 
Sbjct: 285 DLPPHVQEFLGIILKNANRMNRLTEDLLALANVESGEYQLHRQPIAASALLEDTIEGLAG 344

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + ++   +K          V D   + Q+F  ++ NAM +   G +V + A   +G   
Sbjct: 345 MLVDSGFLLKQRETTNTKVLV-DIDAITQVFGNLIENAMKYGRTGQSVTVGARDCDGCVE 403

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I ++    +F RF  V  A   +  G GLGL+I    +  H G + + S  
Sbjct: 404 FYVQDYGPGIAQEHQARIFERFYRVDKARSRESGGTGLGLAIARHIVLAHEGTIHVESEL 463

Query: 779 EGVTTINCRIPS 790
               T   R+P+
Sbjct: 464 GSGATFIVRLPA 475


>gi|78358820|ref|YP_390269.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221225|gb|ABB40574.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 606

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 125/271 (46%), Gaps = 30/271 (11%)

Query: 518 LELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +EL     +E +++P  +     + +L F +V+     ER   EK         ++  FV
Sbjct: 335 VELSGGRYMEITLVPFADPAGTRKIVLAFHDVS-----EREQLEK---------VRRDFV 380

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+EL++PLT+I G+T++L  S       + S +++ I  ++  ++ +VN +L LA  
Sbjct: 381 ANVSHELKTPLTSIKGYTEMLIESPPAG-REQNSMFLQTILKNANHMIKMVNSLLVLARA 439

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
                +   S +    ++ +  + +    HE NI I+            DR  L ++F  
Sbjct: 440 QHKREQTAMSAVDAAAVIRQTVREMDPAAHEKNISIETQMPETPLMVTGDRDALCEVFRN 499

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +L NA+ +S   S V + A    G   F +K++G  IPE   + +F RF    +R  R G
Sbjct: 500 LLDNAVKYSPNNSAVTVSARITEGRAAFCIKDSGPGIPEASKERIFERF----YRLDRDG 555

Query: 754 -------VGLGLSIVESFINLHGGHVSISSS 777
                   GLGL+I    +  HGG + + S 
Sbjct: 556 DTHKNGSAGLGLAICRRIVKSHGGEIWVESP 586


>gi|89094461|ref|ZP_01167401.1| two-component system sensor protein [Oceanospirillum sp. MED92]
 gi|89081353|gb|EAR60585.1| two-component system sensor protein [Oceanospirillum sp. MED92]
          Length = 1314

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 115/527 (21%), Positives = 213/527 (40%), Gaps = 65/527 (12%)

Query: 312  LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
            + N+++ I++ DQ   L   NR +VE+++     +      +E+  F     +     N 
Sbjct: 650  IENISLGISVVDQQMRLVAWNRVYVEMFDYPEGLICVGRPIEEVFRFNAMKGEYGPGNND 709

Query: 372  KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
            +  K+ +  V KS++ H      P+G  L V     P GG +  + ++T    +E     
Sbjct: 710  EQVKKRL-RVLKSAKRHSYERFRPDGTVLEVRGNPMPNGGYVNTYMDITNHKHVEDALRE 768

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
              +      D++   +A   P+ R    N A+   +  +   +S           C +  
Sbjct: 769  SEQNIRIYTDNVPVLIAYLDPERRYLFINKAYAETFDLDRTSIS--------GQACHKIM 820

Query: 492  NESDGWDLFAAIITS-FDDERKSLQGTLELL--SDSVLEYSIIP-LPNAQTMLTFV---- 543
             E + ++L +  IT+  + +R+  + TL     +D   E   IP +     +L +     
Sbjct: 821  TEEE-YELRSPYITAALEGKRQRFETTLPSKDGADRFAEVKYIPHIGEYGDVLGYFTLYQ 879

Query: 544  NVTDSVRAERALTEKNE------------------ALRKADEI----------------- 568
            ++T+  +AE+AL E NE                   LRK + I                 
Sbjct: 880  DITERRKAEKALKETNENLEQRVRERTHALSVVNKELRKENTIRSLMEDELRQAKSDAED 939

Query: 569  ----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
                K  F+   S++L  PL     FT  L      S + +  Q V+ ++ S T    L+
Sbjct: 940  ANLGKTRFLASASHDLLQPLNAARLFTSALAQQ---SHSEETRQLVDNLNGSLTAAEELI 996

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
              ILD++ +DAG ++ + +   L+D+   +         + N++ + +   K+    +D+
Sbjct: 997  TAILDISKLDAGALEPSITDFALDDMFTALSTEFTAVAEKKNLQFQFVQCKKV--VRSDQ 1054

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
            Q L +I    LSNA+ ++ +G  ++L   R        V + G  I ED    VF  F  
Sbjct: 1055 QLLRRIIQNFLSNAIRYTQEGK-ILLGCRRRKNMLRIEVWDTGVGIAEDKISEVFEEFRR 1113

Query: 743  VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + N    Q +G+GLGL+I E    +    +++ S     T  +  IP
Sbjct: 1114 IDNPKHSQVQGLGLGLAITERIARMLNHKLNVRSWPTKGTVFSVDIP 1160


>gi|325277537|ref|ZP_08143133.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324097332|gb|EGB95582.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 642

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 16/218 (7%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL--------RKADEI------KN 570
           VL+ S   L   Q  L   N   S R E AL  KNE L         +ADE+      K+
Sbjct: 424 VLKESQAHLETQQAELEQTNEQLSDRTE-ALDRKNEELTQAQEELQARADELLRSSKYKS 482

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+ELR+PL + +    LL  +  G+L+ +Q ++ E I ++   LLNL+NDILD+
Sbjct: 483 EFLANMSHELRTPLNSSLILAKLLAENVEGNLSGEQVKFAESIYSAGNDLLNLINDILDI 542

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQ 689
           A V+AG +++   T  L+ L+  ++        +  +  +V +  ++  +   DRQRL Q
Sbjct: 543 AKVEAGKLEVRPETTHLDRLVEGLRDMFEPLAGQKGLAFEVTAQAQVPATLFTDRQRLEQ 602

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           I   +LSNA+ F+ +G   +    + +   +FSV+++G
Sbjct: 603 ILKNLLSNAIKFTERGQVSLNIGYQPDSGIVFSVRDSG 640


>gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|308274436|emb|CBX31035.1| hypothetical protein N47_E45470 [uncultured Desulfobacterium sp.]
          Length = 501

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 153/343 (44%), Gaps = 22/343 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I+ L  G+ V    G + L NPAF  L   +    S   HI         +Y + +G+  
Sbjct: 157 IESLPNGIVVTNSTGHVALMNPAFLKLLGLDFYPDSTDGHIE--------HYVKDEGFCS 208

Query: 500 FAAIIT--SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
               I+  S+DD             D  L   I P+   +       ++          E
Sbjct: 209 LVMRISQCSYDDAGNIPPYEFSTSDDKYLMARIRPVVGDENECLGAVIS---------IE 259

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              AL+  D +K+ FV  VS+ELRSPL+ I      +     G  ++ + Q +      +
Sbjct: 260 DITALKMLDRLKSEFVAKVSHELRSPLSTIHEQLASVLNDMAGEDSNGERQLLNRAKEKT 319

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
           + L++L+ D+LDL+ ++AG++      + ++ LL  +   ++T+       IK+ + +  
Sbjct: 320 SGLISLIGDLLDLSRIEAGMVCNELKPVCVSTLLKNIVDFLSTRTKGKQQSIKLNLPETT 379

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L S  +D   L  IF  +++NA++++ +G  +I+ A  +  + +  VK+NG  I      
Sbjct: 380 LPSVQSDPLALESIFGNLIANAINYTQEGGEIIVSAFAEEKNLVVEVKDNGFGIDPKYID 439

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            +F++F    +   R   G GLGL IV+  +   GG + + S+
Sbjct: 440 KIFDKFFRIKNEKTRFITGTGLGLPIVKGLLEDIGGSIIVKST 482


>gi|253568196|ref|ZP_04845607.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
 gi|251842269|gb|EES70349.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
          Length = 499

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 125/230 (54%), Gaps = 11/230 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++       +++ +V 
Sbjct: 256 ENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVR 315

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHENNIRIK 670
            IS +S  L+ L++D+LDL+ +++  +K  ++   L  L+ +V K+     + E  IR  
Sbjct: 316 LISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKEQTMKPISEIEIRAS 375

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNN 726
           + ++    +   D  RL Q+ S  ++NA  F+ KG  +    A D+ D     +F V++ 
Sbjct: 376 LPNEDVYIN--TDATRLKQVISNFINNARKFTEKGY-IHFGYAVDSVDASSVHVF-VEDT 431

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           GS IP++  K +F+RF       Q  G GLGLSI ++ +    G + + S
Sbjct: 432 GSGIPKECQKEIFDRFYKVDTFKQ--GTGLGLSICKTIVEHLQGDIFVES 479


>gi|209526710|ref|ZP_03275233.1| multi-sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209492842|gb|EDZ93174.1| multi-sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 856

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 28/296 (9%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           + D ++    I L N   +L    ++T+  +AE  L    EA  +A++ K+ F+ ++S+E
Sbjct: 552 IRDWLIAIEPIQLENTPCLLILASDITEHKQAEE-LRRAKEAAEQANQAKSLFLANMSHE 610

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  I+G+++LL+              ++ I  +   LL L++DILD + ++AG M 
Sbjct: 611 LRTPLNAILGYSELLQEDAEDLGQDDWVADLKNIHVAGQHLLTLISDILDFSKIEAGRMN 670

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            +     +N LL EV+ +IA    +N+ +  +     L     D  ++ Q    +LSNA 
Sbjct: 671 FHLEKCQINTLLWEVETTIAPLADKNHNQFTLEVAPGLDLMYTDLTKVRQSLLNLLSNAC 730

Query: 700 DFSSKGSTVI-----LKAARDNGDF-------------------IFSVKNNGSSIPEDMC 735
            F+ +G   +     L  A D  D                     F V+++G  + E   
Sbjct: 731 KFTEQGQVTLRVWKQLIPATDLPDLPVYHSLESPEEELSEIPFIFFQVQDHGIGMNERQI 790

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +VF+ F        R+  G GLGLSI      + GG + + S     +T   R+P
Sbjct: 791 ATVFSPFTQADESTTRKYGGTGLGLSITHKLCQMMGGDLWVESELNKGSTFTMRLP 846


>gi|189460351|ref|ZP_03009136.1| hypothetical protein BACCOP_00988 [Bacteroides coprocola DSM 17136]
 gi|189432903|gb|EDV01888.1| hypothetical protein BACCOP_00988 [Bacteroides coprocola DSM 17136]
          Length = 484

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 121/217 (55%), Gaps = 3/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ S++G LN +Q +  + I  +S  LL
Sbjct: 255 FKELDSAKTTFISTISHELKTPISAIMMSLQLLEDSRVGDLNDEQKELAQSIQDNSERLL 314

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N+  ++L++  V++G ++L        +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 315 NITGELLNMTQVESGKLQLKPRITKPIELIEYAIKANRVQAEKFNIQIEVQYPENKIGKL 374

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   +I+   + + ++I   V++ G  I     +S+F
Sbjct: 375 FVDSEKIAWVLTNLLSNAIRYSPENGRIIIGVRQTDDNYIEMYVRDFGKGIDPRYHQSIF 434

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +       + +G GLGLSI + F+  HGG +++ S
Sbjct: 435 DHYFR-VPGTKVQGSGLGLSISKDFVEAHGGTLTVES 470


>gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227]
 gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|39996404|ref|NP_952355.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983284|gb|AAR34678.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 835

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 8/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K+ F+  +S+E+R+P+  IIG   LL  +    L  +Q + ++  + ++  LL +
Sbjct: 323 EASRAKSDFLATMSHEIRTPMNAIIGINQLLVDT---PLTQEQRRLLDDSTTAAESLLII 379

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +NDILDL+ V+A  ++L    + L   +  +++  A +     I + V + +G       
Sbjct: 380 INDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGTPRFVWC 439

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           D  RL QI + +LSNA+ F+  G  V + A  A      +F+V + G  I +   +S+F 
Sbjct: 440 DPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAKQESIFE 499

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F        R   G GLGL+I +  + L GG +++ S      T +  +P
Sbjct: 500 MFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLP 550


>gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
 gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
          Length = 918

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|119776242|ref|YP_928982.1| putative integral membrane sensor protein [Shewanella amazonensis
           SB2B]
 gi|119768742|gb|ABM01313.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1141

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 128/239 (53%), Gaps = 8/239 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+  + E+ L E  +    A   + +F+ ++S+E+R+P+  IIGF+D+L  S+   
Sbjct: 509 IMDITERRQMEQELLEAKDIAEAAATARAAFLANMSHEIRTPMNAIIGFSDILLESQ--- 565

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              ++ ++++ I+ ++  LL+L+ND+LD A +D G ++L      L   L+EV  ++  +
Sbjct: 566 FEPEKHRHLKTINHAAKSLLHLLNDVLDSAKLDKGKLELEVRDFSLVQELDEVISTLWLQ 625

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                +++ + +S   L  +    +R+ Q+ + ++SNA+ F+ KG  V L      G+ +
Sbjct: 626 ARRKGLQLTMEVSPKLLPCYAGSPERIRQVLTNLVSNAVKFTEKGQ-VRLTVNPGQGNHV 684

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F V++ G  +  +    +F+ F        RR  G GLG +I +  + L GGH+S  S
Sbjct: 685 DFVVEDTGIGMSPEQLDKIFDPFTQADASMSRRFGGTGLGTTISKQLVELMGGHISAGS 743


>gi|329577163|gb|EGG58633.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecalis TX1467]
          Length = 370

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 134/255 (52%), Gaps = 8/255 (3%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+  +  ++ F    + +R E  L  + +  ++A++ KN  + +++++L++PLT++IG+ 
Sbjct: 112 PIALSANLMEFDKELNQIRQEVNL--RQQQAKEAEQRKNDLIVYLAHDLKTPLTSVIGYL 169

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL   +L      + +Y+      +  L  L+N+  ++A  +   ++L  +++ L+ +L
Sbjct: 170 TLLH-DELEISTQLREKYLAISLEKAEHLEELINEFFEIARFNLSNIELEPTSVRLDRML 228

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           N+V       + +  + I+ +    L S   D  ++ ++F  ++ NA+++S  G+T+ L 
Sbjct: 229 NQVSYEFLPMLKQKQLTIETVFTEAL-SIHLDVDKMQRVFDNLVQNAINYSYAGTTISLS 287

Query: 712 AARDNGDFIFSV--KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
              DN +   ++   N+G ++P +    +F +F  +  A +  R G GLGL++ +  + L
Sbjct: 288 TKVDNENQRVNIYFTNHGPTVPPEKLARIFEQFFRLDTARQTNRGGAGLGLAVAKKIVEL 347

Query: 768 HGGHVSISSSDEGVT 782
           HGG +S  S +E  T
Sbjct: 348 HGGVLSAESENEKTT 362


>gi|299139616|ref|ZP_07032790.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598544|gb|EFI54708.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX8]
          Length = 480

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 130/255 (50%), Gaps = 23/255 (9%)

Query: 548 SVRAERAL---TEKNE-ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG--- 600
           SV  ERA    TE N  A R+ ++++++ +  +++  +SPLT I       +TS  G   
Sbjct: 232 SVAIERARSFSTEANAVAARQTEQLRSAILDGMAHAFKSPLTTI-------RTSSSGLLA 284

Query: 601 --SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+  + + V  I   ++ L +L N +L  A +D+G +K+N   I L+ L+    +S 
Sbjct: 285 MNTLSGTEKKLVGLIDRHASHLNDLANHLLLTAKLDSGDIKVNREEIDLSQLVENSIESS 344

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           + ++  + + I+V    ++    ADR+ L     +IL NA+ +   GS V++   ++  +
Sbjct: 345 SQELDGHAVEIRVTERPRI--VYADRKLLQMALLQILDNAVKYGRPGSPVLIAVEKEGAE 402

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSIS 775
            + +++N GS IP +  + VF RF   +  G  R   G G+GLS+V      H G V + 
Sbjct: 403 LVIAIRNEGSFIPPEEREKVFQRFYRCS--GSIRTISGTGIGLSVVRRIAEAHQGRVWVD 460

Query: 776 SSDEGVTTINCRIPS 790
           S  E  TT +  +PS
Sbjct: 461 SDVENGTTFSITLPS 475


>gi|224826736|ref|ZP_03699836.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
 gi|224600956|gb|EEG07139.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
          Length = 911

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LT  N  L++ D +K+ F+  V++ELR+PLT+I   +++L+         +Q ++   
Sbjct: 668 RELTAANARLQELDRLKDDFMSSVTHELRTPLTSIRALSEILRDDPDIPPPERQ-RFHAI 726

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L  LVN  LDLA +++G  + + + I L  L+ +  ++      +  + + + 
Sbjct: 727 IVGETERLTRLVNQTLDLAKIESGNAEWHTTEIDLKQLVAQSAEATGQLFRDKEVTLSLE 786

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              ++   +ADR RL+Q+   +LSNA  F  +G  V ++ A         V +NG  I  
Sbjct: 787 LPQRVPPLLADRDRLIQVMLNLLSNAAKFVGRGGRVTVRLAETPEGLRVDVADNGKGIAP 846

Query: 733 DMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F RF         +  G GLGL I    I   GG + + S      T +  +P
Sbjct: 847 EEQQLIFERFRQGGGGMTDKPAGTGLGLPISRHIIEHFGGRLWVESIPGAGATFSFVLP 905


>gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1402

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 123/242 (50%), Gaps = 11/242 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 656 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 712

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + + + + + +
Sbjct: 713 PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSL 772

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
               + + V    +   + + D  R+ Q+   ++ NA+ F+ +G  V+      +GD   
Sbjct: 773 SAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNK 832

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG + +
Sbjct: 833 FKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV 892

Query: 775 SS 776
            S
Sbjct: 893 ES 894


>gi|78048723|ref|YP_364898.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037153|emb|CAJ24898.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1177

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 23/237 (9%)

Query: 552  ERALTEKNEALRKADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  LT++ + L +   I K+ F+  + +E+R+P+T ++G ++LL  + L   N+KQ  YV
Sbjct: 792  EWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLATPL---NAKQRGYV 848

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYS-------TIVLNDLLNEVKQSIATKM- 662
            + I  + T LL LVND LDLA ++AG ++L          T  L D ++ +  +   ++ 
Sbjct: 849  DAICKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELADFMHPIADARGLRLE 908

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N +   V+        V D  R+ QI   +L NA+ F+ +G  V L  ++      F 
Sbjct: 909  YRNQLPPHVV-------VVGDATRVRQILINLLGNAIKFAERGE-VSLTVSQHGDALRFK 960

Query: 723  VKNNGSSIPEDMCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            V++ G  I  +  K +F RF      R   R  G GLGL+I +       G + + S
Sbjct: 961  VRDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVRS 1017


>gi|295108000|emb|CBL21953.1| amino acid-binding domain sensor hybrid histidine kinase
           [Ruminococcus obeum A2-162]
          Length = 951

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 561 ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           AL+KA++    K  F+ ++S+++R+P+  I+G+  L++    G    + S+++E +  S 
Sbjct: 561 ALKKAEDASLSKTRFLNNMSHDIRTPMNAILGYAQLMEDELKGKGLPETSEHLEKLQQSG 620

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           T+LL+++N++LD+A +++  M+L+ +   + D+   +      K  + NI +    + + 
Sbjct: 621 TLLLSIINNVLDMARIESERMELDENYCRIEDVWKSLFAVFDEKAMKKNIVLHYAMNVEH 680

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFI--FSVKNNGSSIP 731
              + D  ++ +IF  ILSNA+ ++  G +V++     +  ++G  I   SV + G  + 
Sbjct: 681 EHVLTDVTKVKEIFVNILSNAIKYTPAGGSVMVDIDELSCDESGYMIVRISVSDTGIGMS 740

Query: 732 EDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +D    +F  F    N  + +  G GLG+SIV+ ++ L GG +++ S
Sbjct: 741 QDYQTKIFEAFTREQNTTKSKIAGTGLGMSIVKKYVELLGGIINVES 787


>gi|182416053|ref|YP_001821119.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177843267|gb|ACB77519.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 1280

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +R E  + +K E L +A+  K+ F+ ++S+E+R+P++ I+G +  ++ +    L+ +Q Q
Sbjct: 765 LRLEALVRKKTEQLEQANNAKSEFLANMSHEIRNPISGIVGLSLAIEETP---LSERQRQ 821

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             + I + +++L  LV+D+LD + ++AG ++L  +   L   L +    +A +    +  
Sbjct: 822 IADSIRSCASLLATLVDDVLDFSKIEAGKIELRLAPFELRAALEQCAAMVAEEARATHTP 881

Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           I++    +L  S + D  R+ QI    L+NA+ F       I   A   G     V+++G
Sbjct: 882 IEISLPPELPASLIGDSARVQQIVLNFLTNAVKFGPGKPIQIGATAVPGGRIRLFVRDHG 941

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +      ++F +F  +  A     RG GLGL++        GG+V + S
Sbjct: 942 PGMSAAETTTLFTKFTRLDRARSQNIRGSGLGLAVCRLLATKMGGNVGVES 992


>gi|81428114|ref|YP_395113.1| two-component sensor histidine kinase transcriptional regulator
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78609755|emb|CAI54801.1| Two-component system, sensor histidine kinase (possibly involved in
           phosphate regulation) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 553

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 98/447 (21%), Positives = 189/447 (42%), Gaps = 64/447 (14%)

Query: 365 LPEQLNWKTWKENIFSV--------------YKSSETH---------KDTWHLPNGQTLH 401
           +P+Q  W TW E   +V              +K   +H          +  H+   +T  
Sbjct: 123 MPQQRFWHTWPEIALTVTVLYLLFSLIVLWQFKRQRSHFYEHLKILVANIHHIRYEETPE 182

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKL 458
            I+        +   E   +  D+      +   QG     IDHL  GV V   + ++ L
Sbjct: 183 PIIFQKDASLYVLAHEVNQLNKDMRHMRQKIAIQQGSFDRLIDHLPVGVMVINENRQVVL 242

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N A   L +T    + P  H          Y ++   ++L   I  +F   R+S    +
Sbjct: 243 HNEAMGQLLETA---IEPQKH---------PYIDDIKTYELTRMIEHTFR-YRRSHHQEI 289

Query: 519 ELLS--DSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           +L+   +  ++ +++ L       Q ++   ++TD              +R+ ++++  F
Sbjct: 290 QLIQNRERFVDANVVQLNTVKSKFQALVILYDLTD--------------IRRVEQMQLDF 335

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           V +VS+EL++P+T I GF + L         + Q Q+++ I   ST L  L+ DIL L+ 
Sbjct: 336 VSNVSHELKTPVTAITGFAETLLAGAKDDPETLQ-QFLKIIYEESTRLTALIQDILALSH 394

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +D    +     I L  ++    + +  K+ +  I + V     L +F   + +L Q+  
Sbjct: 395 LDRQ-DQTQAQDIGLKAIVEANLELMQQKIQQKEIHVSVNIPETL-TFKTQKMKLNQVLK 452

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQ 750
            +++N + ++ +  ++++ A  D+   I  V ++G  IP D+ + +F RF  V  A    
Sbjct: 453 NLIANGITYNKQAGSLVIAAQVDHQQLIIRVVDSGLGIPSDLQERIFERFYRVDQARATH 512

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSS 777
           + G GLGL+I +      GG +++ S 
Sbjct: 513 KSGTGLGLAIAKEITESIGGQLTVESQ 539


>gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7
           EDL933]
 gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli O157:H7 str. EDL933]
          Length = 918

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|260062917|ref|YP_003195997.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region [Robiginitalea
           biformata HTCC2501]
 gi|88784485|gb|EAR15655.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region [Robiginitalea
           biformata HTCC2501]
          Length = 576

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 13/252 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            + D    E A  E  EA R +       +  VS+E+R+PL+ IIGFTDLL  S LG   
Sbjct: 49  KIWDPGAGEEASAELPEASRDS----QMLIATVSHEIRTPLSGIIGFTDLLSESPLG--- 101

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++++YV  I +++  LL +VN++ + +T+++G  K          +L EV     T + 
Sbjct: 102 EREAEYVGAIRSAAHGLLEIVNELREFSTIESGTWKATSIPFNPKQVLGEVGYLCKTLIV 161

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF 719
            +N+  +  I+       + D  +L QI   +L NA+ F++ G   +    +  +     
Sbjct: 162 RDNVAFRTEIARDLPDLLLGDPSKLSQILMNLLGNAIKFTASGHITLRMRCEWRKRTCTL 221

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSS 777
              V++ G  I       +FN F      G+ +G+  GLGLSIV+  I   GG +   S 
Sbjct: 222 HGEVEDTGPGIQPSDLGLIFNPFHQGGQTGETQGIGTGLGLSIVKKIIERQGGAIWAESE 281

Query: 778 DEGVTTINCRIP 789
               +  + R+P
Sbjct: 282 PGSGSRFSFRLP 293


>gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli
           LT-68]
          Length = 918

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|298505413|gb|ADI84136.1| sensor histidine kinase response regulator, HAMP domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 835

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 8/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K+ F+  +S+E+R+P+  IIG   LL  +    L  +Q + ++  + ++  LL +
Sbjct: 323 EASRAKSDFLATMSHEIRTPMNAIIGINQLLVDT---PLTQEQRRLLDDSTTAAESLLII 379

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +NDILDL+ V+A  ++L    + L   +  +++  A +     I + V + +G       
Sbjct: 380 INDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGTPRFVWC 439

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           D  RL QI + +LSNA+ F+  G  V + A  A      +F+V + G  I +   +S+F 
Sbjct: 440 DPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAKQESIFE 499

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F        R   G GLGL+I +  + L GG +++ S      T +  +P
Sbjct: 500 MFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLP 550


>gi|288962258|ref|YP_003452553.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288914524|dbj|BAI76009.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1135

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 128/256 (50%), Gaps = 16/256 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT     E +L    EA  +A+  K  F+  +S+E+R+P+  ++G   L++     +LN
Sbjct: 565 DVTVQREIEASLRRAKEAADQANRAKGEFLATMSHEIRTPMNGVLGALALVEGP---NLN 621

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q Q ++  + S   LL +++DILDL+ ++AG  ++      L  +L +    +     
Sbjct: 622 DEQRQLLDVANRSGNALLQIIDDILDLSKLEAGKAEVEPVDFELRAVLRDSIDLLEPAAC 681

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGD 718
              + +    +  +   V AD +R+ Q+   ++ NA+ F+++G   +       A  +G 
Sbjct: 682 GRGLFLTQEVEPAVPDHVRADLRRIRQVLVNLVGNALKFTNRGGVAVRVGLEGDAVADGS 741

Query: 719 FI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           F+  F V + G  IPE++  ++F RF        RR  G GLGL+I    + L GG + +
Sbjct: 742 FLLRFEVADTGIGIPEEVQPTLFRRFTQADSSTTRRFGGTGLGLAISRELVTLMGGTIGV 801

Query: 775 SSSD-EGVT---TINC 786
           +S++ +G T   T+ C
Sbjct: 802 ASAEGKGSTFWFTVRC 817


>gi|239995114|ref|ZP_04715638.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 490

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   + E+ L +  E   ++  +K+SF+  +S+E+R+P+  I G   L+ +S+L    
Sbjct: 83  DVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLMASSEL---T 139

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+     S   LL++VNDILD + ++AG +++  +   + + L  ++   A    
Sbjct: 140 EEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIEENPFDILESLENLQSQYAIMCQ 199

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E  + +    D +    V  D  R  QI S +L NA+ F+  G   +  + + N D    
Sbjct: 200 EKGLALHFHFDLQGFHVVQGDDVRFRQILSNLLGNAVKFTDSGCIEVTTSIQQNADNSLK 259

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + SVK+ G  I +D   ++F+ F        R+  G GLGLSI +    L GG + + S
Sbjct: 260 LLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELMGGDIKLES 319


>gi|222836961|gb|EEE75354.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 16/247 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             + +AL + D  K  F  ++S+ELR+PLT I+G  +       G + + Q+Q    I  
Sbjct: 340 ARRAKALAEVDHAKTVFFSNISHELRTPLTLILGPLEDALREHGGQVPAGQTQM---IHR 396

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++  L  LVN +LD + ++AG M+ +Y    L     E+     + + +  +R++V    
Sbjct: 397 NALRLQKLVNALLDFSRIEAGRMQASYEPTDLARTTAELASMFRSAVEQAGLRLRVDCPP 456

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI----------FSVK 724
             G    DR    +I   +LSNA  F+ +G   V L+   D  D             SV 
Sbjct: 457 LDGPVHVDRDMYEKIVLNLLSNAFKFTLQGEIAVALRDVPDVHDAHGAGGANGAVELSVT 516

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + GS I       +F RF     +  R   G G+GL++V+    LHGG V++SS++   +
Sbjct: 517 DTGSGIAPQHLPHLFQRFHRIPGKPARTHEGTGIGLAMVQELARLHGGTVTVSSTEGEGS 576

Query: 783 TINCRIP 789
               R+P
Sbjct: 577 RFTVRLP 583


>gi|222106443|ref|YP_002547234.1| Signal transduction histidine kinase [Agrobacterium vitis S4]
 gi|221737622|gb|ACM38518.1| Signal transduction histidine kinase [Agrobacterium vitis S4]
          Length = 784

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 121/249 (48%), Gaps = 6/249 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD  R E AL        +A + K+ F+  +S+ELR+PL +++GF  +L    +   +
Sbjct: 392 DVTDRKRTEEALLTARRDAERASQAKSEFLSRMSHELRTPLNSVLGFAQIL---DMDIED 448

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +  I  +   LL+L++++LD+A ++AG M+L    + L+D++ E     A    
Sbjct: 449 RDMRESLAQILRAGRHLLSLIDEVLDIARIEAGRMELLIEPVGLDDIVTEAIALAAPLAE 508

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
              + I+V  +    + VA DR+R LQ+   +LSNA+ F+  G  + L A       I  
Sbjct: 509 PKQLTIRVEMEAAGQTIVAVDRRRFLQVLLNLLSNAVKFNRDGGEIRLSAQLLTNTMIAI 568

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            + + G  I +     +F  F    A R    G GLGL++  + +    G + ++ SD  
Sbjct: 569 DIADTGCGIADVDRDRLFKPFERLGADRNATTGTGLGLALSVNLMQAMDGDLFLTESDAT 628

Query: 781 VTTINCRIP 789
            +  +  IP
Sbjct: 629 GSVFSIHIP 637


>gi|221197443|ref|ZP_03570490.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221204116|ref|ZP_03577134.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221176282|gb|EEE08711.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221183997|gb|EEE16397.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 1001

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 133/265 (50%), Gaps = 18/265 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T   + E+ L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+  + 
Sbjct: 490 LCTLTDITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAP 549

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---- 654
           L     ++   ++ I++SS  LL +++D+LDL+  ++  M +      + D+L+++    
Sbjct: 550 LAPTERRR---LDTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFY 606

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LK 711
           +   + K  E   R+   ++DG    +V D  RL QI S ++ NA+ F+ +GS  I   +
Sbjct: 607 RPLASAKGLELTCRVAPELADG----YVGDPVRLRQIVSNLVDNAIKFTERGSVSIDARR 662

Query: 712 AARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
             R  G     ++  + G  IP D   ++F+ ++       RR  G GLGL +      L
Sbjct: 663 VVRGAGGARVEIRVADTGIGIPADSVPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAML 722

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
             G +++ S +   TT+   +P  E
Sbjct: 723 MHGDLTVDSREREGTTMCVTLPLPE 747


>gi|167630855|ref|YP_001681354.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167593595|gb|ABZ85343.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
          Length = 558

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 6/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +KN+ L +  +       +VS++LR+PL  I G+ + L+     + + ++ Q  E 
Sbjct: 313 RQLEDKNDQLARGMQSMRDLAANVSHDLRTPLFLIQGYAEALRDDMAKTPDDRR-QMAEI 371

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  LV D+L LA +++G  +L    +    L+  V + ++    E  IR+  +
Sbjct: 372 ILEETDRMQRLVQDMLQLAQLESGYFELKREAVDPEALIYGVARKLSGAADERQIRLICL 431

Query: 673 S---DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +   D  L +  AD  RL Q    ++ NA+  +  G  V+L          FSV ++G  
Sbjct: 432 AYPGDAALPAIHADPDRLTQALINLVDNALRHTPAGGEVVLGLTAQAQSVRFSVDDSGPG 491

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + E     ++ RF        R+  G GLGLSIV++ +  HGG V   +   G  +    
Sbjct: 492 LAEADLDRIWERFYRGEKSRSRKTPGTGLGLSIVKAIVESHGGSVGAENRTGGGASFFFT 551

Query: 788 IPSK 791
           IP K
Sbjct: 552 IPIK 555


>gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536]
 gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536]
 gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 918

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|322418783|ref|YP_004198006.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125170|gb|ADW12730.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 981

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 12/236 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER + E+   L + +    SF   +S++LRSPL  I GFT +L+       N++  Q  +
Sbjct: 726 ERRVAERTAELEEINRELESFCYTISHDLRSPLRAIDGFTHILREDHEADFNAEGRQLCQ 785

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS S+  +  L++D+L+ + +  G   L    I + DL+  V   +  +     I  ++
Sbjct: 786 RISGSAVRMGELIDDLLNFSRI--GRAALQADPIEMTDLVRAVFDEVVPQEARRRIEFRL 843

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSS 729
                L   + DR  L Q+++ ++ NA+ +SS     +++    +   + +F V++NG  
Sbjct: 844 ---APLPPAIGDRATLRQVWANLIDNAVKYSSDRPRQVIEIGGEQTETETVFQVRDNGVG 900

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
                   +F  F  +  AH  + RG G+GL+IV   +  HGG V +  + D G T
Sbjct: 901 FDMAYADKLFGVFQRLHGAH--EFRGTGVGLAIVGRIVQRHGGRVWAEGAVDRGAT 954


>gi|254507686|ref|ZP_05119818.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
 gi|219549383|gb|EED26376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
          Length = 850

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q M    ++T  V AE+      E   ++  ++  F+  +S+ELR+PL  I+G + LLK 
Sbjct: 443 QIMAQGQDITSFVEAEKQSQAAKEEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKH 502

Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               SLN +++ ++V+ +  S   LL ++NDILD + ++ G   +  +   L +L   V+
Sbjct: 503 ----SLNEQEALEHVDVLCNSGEHLLAVLNDILDFSKIEQGKFNIETNEFRLIELETTVE 558

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA 713
           +       E  I + + SD +   +  +D+ RL QI   ++SNA+ F+ +G   + L + 
Sbjct: 559 KIFMPLCVEKGIELSMRSDIESQMWANSDQVRLNQILFNLVSNAIKFTHQGQVCVELSSI 618

Query: 714 RDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                F     VK+ G  I E   K++F  F+       R   G GLGL+IV S + L  
Sbjct: 619 ETEQQFELEIVVKDTGIGIEEPQLKTIFEPFIQAEATTTREYGGSGLGLAIVHSLVELMN 678

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +SI S     TT+  RIP
Sbjct: 679 GTISIDSVVGKGTTLVARIP 698


>gi|220915558|ref|YP_002490862.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953412|gb|ACL63796.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 300

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 3/228 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +  +++  FV  VS+ELR+PLT+I  F + L+  +L     +Q + +E ++  +  L  L
Sbjct: 67  RVAKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQD-PQRQREALEIVAEETARLSGL 125

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N +LD A +++G      S   L  +L+    +   ++  + ++++     +L S +AD
Sbjct: 126 INRLLDWARMESGRRVYELSRQPLGPVLDAALAAFEPQLLHHPVQLERDLPPRLPSVMAD 185

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           R  L++    +L+NA  ++     + L A         +V +NG  IP    K VF++F 
Sbjct: 186 RSALVEAVLNLLNNAFKYTGPDKRIRLSAVASGPTVTIAVTDNGPGIPLRDQKHVFDKFY 245

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             S+  R    G GLGL++V+  +  HGG VS+ S      T    +P
Sbjct: 246 RASDPLRRTVEGTGLGLAMVKHIVVGHGGKVSVESEPGCGATFRIALP 293


>gi|147678721|ref|YP_001212936.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274818|dbj|BAF60567.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 982

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERA  E + A R     K+ F+  +S+E+R+P+  +IG  +LL  +    LN +Q +Y  
Sbjct: 449 ERAKREADTANRA----KSDFLALMSHEIRTPMHGLIGTAELLMET---PLNEEQREYAA 501

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ SS +LL +++DILD + ++ G + L  +      +   V    A K     +    
Sbjct: 502 VINESSEMLLAIIDDILDFSRIEEGKLALEEAGFDPRQVEKRVAGLFAPKAGLKGLLFTS 561

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNN 726
             D  +   +  D  RL Q+   ++ NA+ F+ +G       + K   D     F V++ 
Sbjct: 562 AVDAAVPRVLRGDPLRLGQVLLNLVGNAVKFTERGEVSLRVFVEKREGDIAKIRFEVRDT 621

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE +  S+F+ F        RR  G GLGLSI    + L  G +  +S +    T 
Sbjct: 622 GPGIPEGVRSSLFDPFTQADASTTRRFGGTGLGLSICRRLVELMNGEIGFASEEGRGATF 681

Query: 785 NCRIPSK 791
              IP K
Sbjct: 682 WFTIPFK 688


>gi|126460995|ref|YP_001042109.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102659|gb|ABN75337.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC
           17029]
          Length = 855

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 15/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++   RAER LTE  +     ++ K  F+  +S+E+R+PL  + G  +LL  +    L+
Sbjct: 342 DISARRRAERELTEARDRALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTP---LD 398

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-- 661
            +Q + V  + AS+ ILL+ VN +LD+A  +A   + + + +V  DL   ++  IA +  
Sbjct: 399 PRQRELVSVLRASAEILLDHVNSVLDIARSEA---RPSVAEMVDFDLDRLIEDCIANQSG 455

Query: 662 ---MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +  N I  + ++ G +G    + QRL Q+   +L+NA+ F+  G  +I+++     D
Sbjct: 456 FAAVVGNRIDHRPLT-GPVGILNGEPQRLRQVLLNLLNNAVKFTRNGR-IIVESEVQGAD 513

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V + G  I  +  + VF+ FV+     +RR  G GLGL I      + GG +++ S
Sbjct: 514 VEIRVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGLGLGIARRLARIMGGDLTVQS 573

Query: 777 SDEGVTTINCRIP 789
           +    +    R+P
Sbjct: 574 TPGRGSRFTLRLP 586


>gi|307943284|ref|ZP_07658629.1| sensory box histidine kinase/response regulator [Roseibium sp.
           TrichSKD4]
 gi|307774080|gb|EFO33296.1| sensory box histidine kinase/response regulator [Roseibium sp.
           TrichSKD4]
          Length = 805

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 12/225 (5%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLV 624
           D ++N F+  VS+ELR+PLT+I G   L  T   G+ +  K S+ ++    +S  L  LV
Sbjct: 415 DRMRNEFIYTVSHELRTPLTSIRGSLALANTLAAGTEIPEKVSKMMDLALKNSERLNLLV 474

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH---ENNIRIKVISDGKLGSFV 681
           NDILDL  + +G    + S + LN+    V++S+A   H   E N+++K     +     
Sbjct: 475 NDILDLEKLRSGKTTFDLSEVDLNE---AVEESVALNQHYALERNVKLKATPLEQPVVVK 531

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D+ RL Q+ S ++SNA  FS +  TV ++   +       V + G  IP++    +F+ 
Sbjct: 532 VDKARLQQVLSNLISNAAKFSHENGTVDVRVGLEGEAAKLYVIDAGMGIPDEFKAYIFDP 591

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F S A   +RR   G GLGL+I +  +    G ++  +S+EGV T
Sbjct: 592 F-SQADGSERRKKGGTGLGLNITKRLVEGIDGGINF-TSEEGVGT 634


>gi|303248480|ref|ZP_07334738.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490100|gb|EFL50020.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 667

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 124/260 (47%), Gaps = 18/260 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           F N+T+  RAE +L      L  A        + K+ F+ ++S+E+R+PL  ++G   LL
Sbjct: 262 FSNITERKRAEESLRLSETRLAAAKEAAETASKAKSEFLANMSHEIRTPLNGLLGMLQLL 321

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +    L++ Q   V     S   L  L+ DILDL+ V++G + L Y+   L ++   +
Sbjct: 322 EDT---DLDADQRDCVVTALDSGRRLTRLLTDILDLSRVESGKLALVYAPFSLREVFASI 378

Query: 655 KQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +   AT + +  + ++  +S       + D  R+ Q+   ++ NA+ F+  G   +   +
Sbjct: 379 QTVFATSLEQRGLTLEPTVSPAVPAMLIGDEGRIRQVLLNLVGNAIKFTRTGGIFLEAGS 438

Query: 714 RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
             + +      I SV + G  IP +  K+VF  F  V  ++    +G GLGLSIV+  + 
Sbjct: 439 SPDPETGKVRLILSVGDTGIGIPREKIKAVFEAFTQVDASNTRIHQGAGLGLSIVDRLVR 498

Query: 767 LHGGHVSISSSDEGVTTINC 786
           L  G + + S     T + C
Sbjct: 499 LMDGQLWMDSEPGIGTCVMC 518


>gi|299136566|ref|ZP_07029749.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
 gi|298601081|gb|EFI57236.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
          Length = 931

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 34/298 (11%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I+TS  D R SLQ     LS+    Y +I                   AE A  E+  A 
Sbjct: 240 ILTSVLDRRYSLQAVQLELSEQ--RYRMI------------------EAEAAGRERVRAA 279

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             + + K+ F+ ++S+E+R+PL  IIG TDL   ++   L  +Q  Y+E +  S   LLN
Sbjct: 280 EASSQAKSEFLANMSHEIRTPLNGIIGMTDLALETE---LTQEQRDYLETVKLSGDALLN 336

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           ++NDILD + ++AG ++L      L + +    +++A +  E  + +       +   V+
Sbjct: 337 VINDILDFSKIEAGKIELEEIDFNLCNCIEGTLKTLALRADEKGLELLCDVSPHIAEVVS 396

Query: 683 -DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCK 736
            D  RL QI   ++ NA+ F+SKG  + LK   D          F + + G  I  +   
Sbjct: 397 GDPGRLRQILLNVIGNAIKFTSKGE-ISLKVKSDLIEEKKSILHFIITDTGIGIAPEKLT 455

Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++F+ F + A     R   G GLGL+I    + + GG + + S     +  +  IP K
Sbjct: 456 TIFDSF-NQADTSTTREFGGTGLGLTISRCLVEMMGGKLWVESEVGVGSQFHFTIPMK 512


>gi|291524415|emb|CBK90002.1| Signal transduction histidine kinase [Eubacterium rectale DSM
           17629]
          Length = 440

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+  ++E +  A + +  F  +VS+EL++PLT I G+ +L++   +     +Q  +   I
Sbjct: 208 AIRIQHEGVLAAAKSRQDFTANVSHELKTPLTAISGYAELIENGMVEK--EQQIHFATEI 265

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  LL+L+NDI+ L+ +D+   +  +  + L  L+ +  +++     +  + +    
Sbjct: 266 RRNAQRLLSLINDIIKLSELDSSEAQQGFEQLDLYGLVKDCMENLQVNAEQRKVALNF-- 323

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           DG       +RQ L ++   +  NA+ ++++G TV +   +  G  + +V++NG  IP+D
Sbjct: 324 DGTDCMVRGNRQLLTELVENLCQNAIRYNNEGGTVNVTVHKLGGKTVLTVEDNGIGIPKD 383

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             + VF RF  V  +   +  G GLGL+IV+  + LH   +++ S     TTI
Sbjct: 384 QQERVFERFYRVDKSRSKETGGTGLGLAIVKHIVELHDAGLTLDSEVGRGTTI 436


>gi|213582822|ref|ZP_03364648.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 610

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 118/219 (53%), Gaps = 16/219 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+E K++F+  +S+E+R+PL  I+G   LL    L + N +    ++ I+ S   LL +
Sbjct: 139 KANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMA-NYRDD--LQAINDSGESLLAI 195

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLG 678
           +NDILD + ++ G      + + +++   E +Q + + +H  + R++V      S+    
Sbjct: 196 LNDILDYSAIEVG-----GTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 250

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   D +R+ QI   +LSNA  F+ +GS ++L+   D+  +   V++ G  IPE    ++
Sbjct: 251 TLQGDPRRIRQIVINLLSNAAKFTDRGS-IVLRTFCDDQSWFIEVEDTGCGIPEAKLTAI 309

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F  FV     G R G GLGL+I  S     GG ++++S+
Sbjct: 310 FKPFVQAT--GCRGGTGLGLAISASLAEAMGGTLTVTST 346


>gi|197106174|ref|YP_002131551.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196479594|gb|ACG79122.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 257

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 3/246 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ- 606
           S  ++ A T  +      D  K SF++ VS+ELR+PL +I+GF+++L +   G L + Q 
Sbjct: 11  SADSKAAQTAPDRRAAATDAQKRSFLRMVSHELRTPLNSILGFSEILTSELYGPLGAPQY 70

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y   I  S   LL LVN +L++A ++   +  +     L   L++V   +A ++   +
Sbjct: 71  KEYAGIIRESGQKLLKLVNQVLEIARLENQSVDFDPRPEPLEAALDDVLAGLADEIEARH 130

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + ++V   G L    AD + L  +   +L NA+ FS +G TV + A    G     +++ 
Sbjct: 131 VAVEVTGRGDLPVVTADPRGLRTVLHHLLHNAVAFSPEGGTVWVGAQALAGGVEIVIRDE 190

Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I       +   F    NA      G GLGL I +      GG ++++S      T 
Sbjct: 191 GEGIDPAELPRLMTPFEQGENALTRHTEGAGLGLPIADLTCKAMGGRLTLASKPGKGLTA 250

Query: 785 NCRIPS 790
             R+P+
Sbjct: 251 GLRLPA 256


>gi|167842294|ref|ZP_02468978.1| probable two-component sensor/regulator [Burkholderia thailandensis
           MSMB43]
          Length = 928

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 26/232 (11%)

Query: 557 EKNEALRKADEIKNSFVQHV---SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           E NEA R A+   +S  +H+   S+E+R+PL  I+G   LL  S+L     +Q + V   
Sbjct: 391 ELNEAKRMAESANHSKSEHIASISHEIRTPLNGIMGALALLARSQL---QPRQQELVGVA 447

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS  LL +VN++LD + ++AG ++L Y    L  LL++   +I  + +E ++      
Sbjct: 448 QQSSGYLLGIVNNVLDYSRIEAGHLELAYEQTQLLPLLDQAMLTIHLRANEKHL------ 501

Query: 674 DGKLGSFVA---------DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
              L +FVA         D  R+ QI   +L NA+ F+  GS  ++   R N      V+
Sbjct: 502 --TLSTFVAPDVPQQIWLDALRVRQILINLLGNAVKFTDFGSIRLVVERRGN-RLAMIVE 558

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  IP      +F  FV    R    G GLGL I     NL  G + +SS
Sbjct: 559 DTGKGIPPSYQLDIFKPFVQV--RAHDSGNGLGLPIASRLANLMNGEILMSS 608


>gi|110806548|ref|YP_690068.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5 str.
           8401]
 gi|110616096|gb|ABF04763.1| sensor-regulator [Shigella flexneri 5 str. 8401]
          Length = 918

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89]
 gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1]
 gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88]
 gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a]
 gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
 gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli UTI89]
 gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY
           [Escherichia coli APEC O1]
 gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli S88]
 gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli ED1a]
 gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           LF82]
 gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           IHE3034]
 gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
 gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
 gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252]
 gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263]
 gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
          Length = 918

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|27382507|ref|NP_774036.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
 gi|27355679|dbj|BAC52661.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
          Length = 1171

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 119/241 (49%), Gaps = 2/241 (0%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            F +++ S + E  LT+    +  A   K   +  +S+E+R+PL  IIGF +++ + + G+
Sbjct: 917  FRDLSQSKKGESELTQARRLVDGAANAKADMLARISHEIRTPLNAIIGFAEVMISERFGT 976

Query: 602  L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L N +  +Y++ I AS   ++ +++D+L+L+ ++ G + LN++ + LNDL+      +  
Sbjct: 977  LGNERYGEYMKDIRASGERVIAIIDDLLELSRIETGKLDLNFANLNLNDLVEACVVVMQP 1036

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719
            + +   I I+      L     D + + QI   ++SN++  +S G  VI+  A  D G+ 
Sbjct: 1037 QANRERIIIRTSLGHALPQVSVDARAMRQITMNLISNSIRLASAGGQVIVSTALNDRGEV 1096

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
               +++ G  + E    +    F +           L LS+ ++ +  +    +I S+  
Sbjct: 1097 ALRIRDTGHGLSEREVAAAMEPFRTPPPGDAEDNSALSLSLTKALVEANRARFNIKSAGH 1156

Query: 780  G 780
            G
Sbjct: 1157 G 1157


>gi|297529462|ref|YP_003670737.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297252714|gb|ADI26160.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 468

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   A  +  +A+ K DE K  F+ +VS+ELR+PL+ + G+++ L  + L     ++  Y
Sbjct: 222 RLAEAFNQMADAIAKEDERKREFLANVSHELRTPLSYMKGYSEAL-LAGLAKTKEEEKAY 280

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  +  LV D+LDLA ++   + L  + +    ++ +V  +      +  I +
Sbjct: 281 LRLIHRETERMERLVRDLLDLARLEGQSVPLERAPVAFAQVIEDVIATYEPIAAQKRIEL 340

Query: 670 K------VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI 720
                  +I +G       D  RL Q+   +L NA+ ++ +G  + ++ +R     G+ +
Sbjct: 341 ACELDYDIIVNG-------DADRLEQVVRNLLDNAIRYTPEGGVMTVRLSRLSEAEGELV 393

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +++ G  IP+D    +  RF  V  A   +  G GLGL+IV+  ++LH G +   S  
Sbjct: 394 --IQDTGKGIPKDQLPFLGQRFFRVDRARTRKEGGTGLGLAIVKQIVSLHDGAIRFDSDL 451

Query: 779 EGVTTINCRIP 789
               T+  R+P
Sbjct: 452 GRGMTVFVRLP 462


>gi|254561308|ref|YP_003068403.1| two-component system regulator: response regulator receiver
           [Methylobacterium extorquens DM4]
 gi|254268586|emb|CAX24543.1| putative two-component system regulator: response regulator
           receiver (N-terminal) and histidine kinase (C-terminal)
           [Methylobacterium extorquens DM4]
          Length = 616

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 135/280 (48%), Gaps = 15/280 (5%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSF 572
           L G L +  D+V+ Y  +   N       V  T + +RA R L  +   LR+A+ +K   
Sbjct: 322 LAGRLSVAFDNVILYERLQRANVTLEQRVVERTAELIRANRRLDMQRSDLRRANSLKTEI 381

Query: 573 VQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQ-----YVEYISASSTILLNL 623
           +  ++++L++PL+ I+G     TDL+   +  +  ++++Q      VE+I AS+T L+++
Sbjct: 382 LGTIAHDLKNPLSVILGRSEMLTDLIGLDQEDASGAEKAQAAMLTQVEHIRASATRLIDM 441

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++ ++  A  DA  + L    + L  L  EV ++           + +   G L S   D
Sbjct: 442 IDSLMADAMNDALDITLRREPVDLAGLAREVCEANRPLAESKGQSLVMDLAGPL-SLCGD 500

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF 742
            +RL +    ++SNA+ +S  G  + +    + GD + +V + G  + PED  + +F R+
Sbjct: 501 AERLREALDNLVSNAIKYSYPGGAIAVSVREEAGDLVCAVADQGPGLSPEDAGR-LFGRY 559

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             +S    G     GLGLSIV+    LHGG     S   G
Sbjct: 560 QRLSAKPTGGEGSTGLGLSIVKRIAELHGGRAEAFSDGPG 599


>gi|229161460|ref|ZP_04289441.1| Sensor histidine kinase [Bacillus cereus R309803]
 gi|228621997|gb|EEK78842.1| Sensor histidine kinase [Bacillus cereus R309803]
          Length = 312

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L  + I + +LL ++      ++ E NI  +     +    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + L A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGNDGHYIDLTAYESNNMITIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S D   T     IP K
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDTKTTFTVKLIPYK 311


>gi|150015251|ref|YP_001307505.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901716|gb|ABR32549.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 682

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 125/245 (51%), Gaps = 6/245 (2%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEAL-RKADEIK---NSFVQHVSYELRSPLTNIIG 589
           P+A  ML  +     ++   +  E+N+ L  KA E+      F  ++S+EL++PL  ++G
Sbjct: 390 PSAMVMLRDITSRKQIQLLESNIEENKKLISKATELNKMMTEFFSNISHELKTPLNVLLG 449

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              +L  S       +  +Y++ +  +   L+ LVN+++D++  D+G  K+N     +  
Sbjct: 450 AVQILSLSGNDKNKLESGKYLKTMKQNCYRLVRLVNNLIDISKFDSGYFKMNLQNYNVVS 509

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++ ++  S+A   +   I +   +D +      D  ++ +I   +LSNA+ F+ KG  ++
Sbjct: 510 VIEDITLSVADYANNKGIDLIFDTDVEEKDMAIDLDKIERIMLNLLSNAIKFTDKGGQIL 569

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           +       + + SVK+NG  +P+D    +F RF  +        +G G+GLS+V+S +++
Sbjct: 570 VNMYDKKDNIVISVKDNGVGMPKDKLNMIFERFGQIDKTLARNSQGSGIGLSLVKSIVDM 629

Query: 768 HGGHV 772
           H G +
Sbjct: 630 HNGDI 634


>gi|307822393|ref|ZP_07652625.1| histidine kinase [Methylobacter tundripaludum SV96]
 gi|307736959|gb|EFO07804.1| histidine kinase [Methylobacter tundripaludum SV96]
          Length = 673

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 110/214 (51%), Gaps = 8/214 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+P+  ++GF+ L++  K   L+ +Q + +  I+ S   LL L+ND+L
Sbjct: 214 KSIFLANMSHELRTPMNAVLGFSQLMQ--KDSDLSPEQRETLNIINNSGKHLLELINDVL 271

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D+A ++AG + +      L  L+ +    +  +     + + +        FV +D  + 
Sbjct: 272 DMAKIEAGRVIVENGNFDLGALIRDTIDMMHQRAEAKGLELFLDQSSSFPRFVNSDEAKF 331

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF 742
            QI   ++ NA+ ++ KG  ++L  A +  D      I  +K+ G  I +     +F+ F
Sbjct: 332 RQILLNLVGNAIKYTQKGRVIVLLTAENLPDTQQCLLICEIKDTGIGIAKQDLPFIFDTF 391

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V       ++G GLGL I + +  L GG V+++S
Sbjct: 392 VQVGRESDQQGSGLGLRITKQYAELMGGQVTVTS 425


>gi|307152019|ref|YP_003887403.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306982247|gb|ADN14128.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 398

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 4/273 (1%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           TLE+L  S L Y+I     AQ  L  +N    +R E    E  +A ++ +++K  FV  +
Sbjct: 114 TLEILVRS-LCYAIERKQVAQQ-LEQMNEKLQMRVEERTAELTKA-KEINQLKTEFVSML 170

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S++ R+PL  I+    LL+  +      +Q  Y + I ++   +  L+ ++L +   DAG
Sbjct: 171 SHDFRNPLNTILLSAGLLEDCRDRLSQEQQLNYFQMIRSAIKDMDQLLTEVLIIGRADAG 230

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +K N   + L +    + Q+    + E + ++   +DG     + D   L  I + +L 
Sbjct: 231 RLKFNPVPLNLKEFCANILQAFRLNISEAH-QLIFKADGNFNDGLWDDNLLRHILNNLLG 289

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA+ +S  G  + L      G  IF+V++ G  IP +  + +F  F    +     G GL
Sbjct: 290 NALKYSPNGGIIRLDLIEGKGQVIFTVQDQGIGIPPEAIEGLFKPFFRATNVDNIAGTGL 349

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+IV+  +  HGG+V + S     TT    +P
Sbjct: 350 GLAIVQRCVETHGGYVEVKSQVGVGTTFMVTLP 382


>gi|169826015|ref|YP_001696173.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
 gi|168990503|gb|ACA38043.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
          Length = 462

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 122/235 (51%), Gaps = 5/235 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA+++ DE + +F+  VS+ELR+P++ + G+++ ++   +    +++ + ++ I   +  
Sbjct: 230 EAIQQEDEAQKTFLATVSHELRTPISYVKGYSEAMQNGIITE--NQKEETIQLIVREANR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L N++L LA  +    ++    I L + L EV++ +  +  + NI + +  D  L  
Sbjct: 288 MERLTNELLQLARTENEQTEIVVYPIPLGETLREVQKILTHQADKKNITLHLDVDDAL-I 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  +L QIF  I+ NA+++S + S V + A   NG    ++K+ G  IP++    V 
Sbjct: 347 IQADEVKLKQIFINIIENAINYSYENSKVEMVAIEKNGSAQITIKDYGIGIPQEDISHVT 406

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  V+ A      G GLGLSIVE  +    G + I S  E  T +   +P  E
Sbjct: 407 ERFYRVNKARSRADGGSGLGLSIVEQLLKQLQGRLEIKSIIEKGTIVKITLPLME 461


>gi|254241747|ref|ZP_04935069.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192]
 gi|126195125|gb|EAZ59188.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192]
          Length = 741

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M  ++++T+  R  R L    EA+R+ADE    K+ F+  +S+E+R+P+  +IG  +L+ 
Sbjct: 218 MNGWIDITERERLARQL---REAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL 274

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    + S  V Y +A S  L  L+ DILD+A +++G + L    + L  ++  V+
Sbjct: 275 QRLAPEQRERASLEVAYEAAGSLQL--LIGDILDVAKIESGHLTLTPERVRLRHVVESVR 332

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       +  +R+ +  D   G  V  D  R  Q+ S ++SNA+ F+ +G   I    R
Sbjct: 333 RMFEGLARQKGLRLVLELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERGQVTIRLQER 392

Query: 715 --DNGDFIFSVKNNGSSI---PEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
             D G  I  V    S I   P D  + +F  F+  A  R  + G GLGL+I    ++L 
Sbjct: 393 SLDEGRAIVRVDVEDSGIGIAPADQAR-LFQPFIQVAKGRTVQGGTGLGLAICRKLVDLM 451

Query: 769 GGHVSISS 776
           GG V + S
Sbjct: 452 GGDVEMHS 459


>gi|16762498|ref|NP_458115.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143986|ref|NP_807328.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|289826393|ref|ZP_06545505.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25512351|pir||AD0959 Two-component sensor protein histidine protein kinase. [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504803|emb|CAD03168.1| Two-component sensor protein histidine protein kinase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139622|gb|AAO71188.1| two-component sensor protein histidine protein kinase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 911

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 123/233 (52%), Gaps = 16/233 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+E K++F+  +S+E+R+PL  I+G   LL    L + N +    ++ I+ S   LL +
Sbjct: 440 KANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMA-NYRDD--LQAINDSGESLLAI 496

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLG 678
           +NDILD + ++ G      + + +++   E +Q + + +H  + R++V      S+    
Sbjct: 497 LNDILDYSAIEVG-----GTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 551

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   D +R+ QI   +LSNA  F+ +GS ++L+   D+  +   V++ G  IPE    ++
Sbjct: 552 TLQGDPRRIRQIVINLLSNAAKFTDRGS-IVLRTFCDDQSWFIEVEDTGCGIPEAKLTAI 610

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  FV     G R G GLGL+I  S     GG ++++S+    +    ++P +
Sbjct: 611 FKPFVQAT--GCRGGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLPVR 661


>gi|152967109|ref|YP_001362893.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
 gi|151361626|gb|ABS04629.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
          Length = 389

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 167/374 (44%), Gaps = 48/374 (12%)

Query: 440 IDHLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRN---IAATCSRYYNESD 495
           +D L +GV V   DG I  L+  A R L +     L  GT +R    +  T  R +    
Sbjct: 39  LDDLPDGVVVIRSDGSITDLNVAAERLLGRPRAELL--GTPLRRAMPLQDTSGRRW---- 92

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
            WD+        D +  S       ++DS     ++ LP    +L       +  A+ +L
Sbjct: 93  -WDVL------RDGDGPSG------VTDSGHGERLLLLPGGTELLVTARFHRA--ADGSL 137

Query: 556 TEKNEALRKADEIKN------SFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQ 608
            +   ALR  DE +       S +  V++ELRSPLT++  FT  LL+  +    + +Q +
Sbjct: 138 DQAVLALRTPDERRRAETDTTSLIATVAHELRSPLTSVKQFTASLLR--RWDRFSDEQKR 195

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  + A +  +  LV D+LD+A VDAG + ++   + L  L+ E    +    +++  
Sbjct: 196 LMLSTVQADAERVSRLVGDLLDVARVDAGRLTVHRRPMDLATLVREHVDRLRMAGYDDE- 254

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDN-GD----- 718
           R  +   G L    AD  R+ Q+ + ++ NA+   +    V   +L AA    GD     
Sbjct: 255 RFVLTVAGDLPELWADPDRMAQVVTNLVDNAVRHGAGTVAVEVSVLSAAEAAVGDGAGEA 314

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + +V + G  IP +    VF++F    H G R G GLGL +    +  HGG + +SS+ 
Sbjct: 315 IVLTVDDAGEGIPAENRPYVFSKFW---HGGARSGTGLGLYVTRGLVEAHGGDIDVSSAP 371

Query: 779 EGVTTINCRIPSKE 792
            G      R+P+ E
Sbjct: 372 GGGARFTVRLPAGE 385


>gi|332999537|gb|EGK19122.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri VA-6]
          Length = 918

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|325278015|ref|ZP_08143541.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas sp. TJI-51]
 gi|324096844|gb|EGB95164.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas sp. TJI-51]
          Length = 1259

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 17/257 (6%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRK-------ADEIKNSFVQHVSYELRSPLTNIIGF 590
            T+LTF++++ S  AE  +    E L K          +K+ F   +S+EL+ PL  I   
Sbjct: 852  TVLTFIDISSSHAAEEHVRLGEERLSKQLAESQTTSHMKDEFFAIMSHELKHPLNLIQLN 911

Query: 591  TDLLKT----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
             ++L+      ++G+ +   +   E + + + I    ++D+LD+A +  G +KL    + 
Sbjct: 912  AEMLRRLPSIKQIGNASKAVATICEAVGSQARI----IDDLLDVARIRTGKLKLKTEPVD 967

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            L  +L  +   +  + H   +R+++ +DG       D  RL QI   +L+NA+ FS  GS
Sbjct: 968  LGAILRGIHAVVVAEQHPCLVRLELPADGLPVMIEGDVTRLEQIIWNLLNNALKFSPAGS 1027

Query: 707  TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESF 764
             + L  +RD+      V + G  +  D  + +F+ F          R G+G+GLS+V   
Sbjct: 1028 EIRLVLSRDDQQARLQVIDQGVGLSPDSLEHIFDLFSQAPQLANQNREGLGIGLSLVRQL 1087

Query: 765  INLHGGHVSISSSDEGV 781
            +   GG V  SS+  G+
Sbjct: 1088 VEAQGGTVQASSAGLGL 1104


>gi|302337704|ref|YP_003802910.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301634889|gb|ADK80316.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 1230

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 34/249 (13%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +A + K+ F+ ++S+E+R+PLT ++G   LL  +K   LN  Q  +++Y   ++  L  L
Sbjct: 850  EATKAKSLFLANMSHEIRTPLTGMLGMFSLLAKTK---LNQNQRSFLDYSRTAAENLNQL 906

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV----------IS 673
            VND+LD+ ++++G       T+ L++   + ++++A   H    R K            S
Sbjct: 907  VNDLLDVESIESG-------TLPLHETRFDPEKALAYVYHLFEERAKAQGLDFFLDIEAS 959

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKA------ARDNGDFIFSV 723
            D  L   + DR R +QI + ++SNA+ ++  GS      I  A      A+    +  +V
Sbjct: 960  DPSL-EVLGDRNRFIQIVTNLVSNALKYTESGSISLKLTIAPAELTQAEAQRRRSYTVTV 1018

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G  IP+D   S+F  F  +   +    +GVGLGL+IV+  ++   G +S+ SS  G 
Sbjct: 1019 SDTGIGIPKDKTGSIFESFTQLDTGYAKSSKGVGLGLAIVKQLVDAMDGTISVESSPGGT 1078

Query: 782  T-TINCRIP 789
            + T++   P
Sbjct: 1079 SFTVSLSFP 1087


>gi|291516107|emb|CBK65317.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 1357

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 143/309 (46%), Gaps = 15/309 (4%)

Query: 472  NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
            N L PG +   +          SD   L+  I  SF   + +L G +      VL   +I
Sbjct: 754  NNLRPGEYCFRVQVGNGDMQWNSDETKLWIRIQPSFFRSKGALAGYV------VLTLIVI 807

Query: 532  PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                A  +  ++  T+  + E+  + K E  R   E + SF  ++++E+R+PL+ IIG  
Sbjct: 808  ----AVGLYYWMRRTEQQQREKIESVKRENERNLYEQRISFFTNITHEIRTPLSLIIG-- 861

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             L +  K   ++ +  +Y+  I  +   L +LVN +LD   +D+   +L Y    +  L+
Sbjct: 862  PLEQVMKSHRISEEDGEYLAVIKQNYHRLHSLVNQLLDFRKIDSNKYRLRYDICDVGQLV 921

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             E          +  IR+      +L   + DR+ L +I S +LSNA+ F+++   + + 
Sbjct: 922  REQLAMFGPTAQQRRIRLIEEIPNRLMQ-ITDREALTKIISNLLSNALRFAAEEIHICID 980

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              RD+G  +  V ++G  IP +  + VF  F    + G   GVG+GL +   FI L GG 
Sbjct: 981  R-RDDG-LVMEVWDDGPGIPAEEREKVFEAFYQTRNNGFASGVGIGLHLCRIFIRLMGGT 1038

Query: 772  VSISSSDEG 780
            ++ +   +G
Sbjct: 1039 ITATERPDG 1047


>gi|66821389|ref|XP_644179.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74860304|sp|Q869S5|DOKA_DICDI RecName: Full=Hybrid signal transduction protein dokA
 gi|60471990|gb|EAL69943.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1671

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 22/255 (8%)

Query: 536  AQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +  +TFV +++   +AE A  E       A  +K  F+ ++S+ELR+P   I+G + LL
Sbjct: 1017 TEQCITFVFDLSRYRQAEMAAIE-------ATRLKTQFITNISHELRTPCHGIVGMSQLL 1069

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              S+L    + Q   ++ I  S+  L++L+NDILD + ++ G + L   +  L  ++ EV
Sbjct: 1070 LDSQL---TNTQRDNIDSIKRSTDSLISLINDILDFSKLEYGKVTLENESFELLPMIEEV 1126

Query: 655  KQSIATKMHENNIRIKVI--SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
              S AT  +   I +  +   D  +   +  DR  L ++   ++ NA+ F+  G  V+L+
Sbjct: 1127 LDSQATAANRKGIDLIFVMGRDYPVPPVIFGDRNSLKKVLLNLVGNAVKFTETG-FVLLE 1185

Query: 712  AARD--NGDFI---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
             + D  +GD I   F+VK++G  IPE+  + +F  F  +  +   +  G GLGLS  +  
Sbjct: 1186 ISTDYESGDQISLRFTVKDSGIGIPENKIEQIFVPFGQIDGSFSRKYGGSGLGLSFCKEL 1245

Query: 765  INLHGGHVSISSSDE 779
            + L GG++ + S D+
Sbjct: 1246 VALMGGYIRVESGDQ 1260


>gi|225569214|ref|ZP_03778239.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM
           15053]
 gi|225162013|gb|EEG74632.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM
           15053]
          Length = 678

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 123/254 (48%), Gaps = 21/254 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-----DLLKTSKLGSLNS 604
           R  + L +  +  R A E K +F+  +S+++R+P+  I+G T     +L    KL    S
Sbjct: 269 RQRKMLEDAYKTARIASEAKTNFLSSMSHDIRTPMNAIMGMTAIAEANLYTPDKLKDCLS 328

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K       I+AS+  LL L+N++LD++ +++G + L + T+ L +L   +         E
Sbjct: 329 K-------INASAQHLLGLINEVLDMSKIESGKIDLTFGTVSLPELFQNISDMCRPLAQE 381

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNG 717
            N ++++ + D    + + D  RL Q+   +L+NA+ ++ +G  + L        A   G
Sbjct: 382 KNQKLQLSVDDVCHKTVITDGGRLQQVLMNLLTNAIKYTPEGGAISLHVREIPSDAVYKG 441

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            + F V +NG  +  +    +F  F    +    + +G GLGL+I ++ +N+  G + + 
Sbjct: 442 QYEFIVTDNGIGMTAEYIPHIFEPFSRAEDTRINKIQGTGLGLAITQNIVNMMNGTIEVQ 501

Query: 776 SSDEGVTTINCRIP 789
           S  E  +     +P
Sbjct: 502 SEPENGSRFIVAVP 515


>gi|220924442|ref|YP_002499744.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949049|gb|ACL59441.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 900

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 125/275 (45%), Gaps = 19/275 (6%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE----ALRKADE---IKNSFVQHVS 577
           VLE +     +   +  + +VT   +AE AL E +     A R+A+     K+ F+  +S
Sbjct: 463 VLEVTSTATADGGILRIYTDVTARRKAEAALAEAHRIAQVARREAEAGSAAKSEFLATMS 522

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PLT ++G+ DLL       L  +  + V  I ++   LL +V+D+LD + ++AG 
Sbjct: 523 HEIRTPLTGVLGYADLLTAQS--DLAPEHRRLVGRIRSAGEALLTIVDDVLDFSKIEAGE 580

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696
           + L+        L++E    +        + +    D  +    V D  RL Q+   +L+
Sbjct: 581 ITLDPKPFSPAQLVDEALALVRAAADRKQLALSARIDPAIPERLVGDVGRLRQVLLNLLN 640

Query: 697 NAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
           NA+ F+  GS  +  A    G           V + G  IPE+    +F RF  V  + +
Sbjct: 641 NAVKFTRAGSVTVTVACEPAGPDAQDCPIRICVTDTGIGIPEEKRGRLFQRFSQVDGSIQ 700

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
               G GLGL+I    I    G + + S + EG T
Sbjct: 701 RHYEGTGLGLAISRRLIEAMNGRIDVDSRAGEGST 735


>gi|162449407|ref|YP_001611774.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159989|emb|CAN91294.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 469

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 4/220 (1%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  +A R A   ++  +  V+++LR+PL  I      L+         +Q++ +E++S  
Sbjct: 207 EARDAARMALAARDELMGIVAHDLRNPLGAIALKAAWLRRGADSERTRQQAESIEHVSLR 266

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              +  L+  +LD+ T+ A    +      + DLL+E  ++         +R +      
Sbjct: 267 ---MERLIRTMLDVTTMQASRFSVTPKPFAVEDLLHETMETFGPLSESKQVRFEQSLKEP 323

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                A+ +R+LQ+ S +L NA+ F+ K   VIL   RD     F+V ++G  IP     
Sbjct: 324 GLVIRAEWERVLQVLSNLLGNALKFTPKSGQVILSVDRDGAMARFAVLDSGPGIPPQNLT 383

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           S+F RF  +   G ++G GLGL I +  ++ HGG + + S
Sbjct: 384 SIFERFWKDETPG-KKGTGLGLYIAKGIVDAHGGRIWVES 422


>gi|163814352|ref|ZP_02205741.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759]
 gi|158449987|gb|EDP26982.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759]
          Length = 765

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 125/237 (52%), Gaps = 13/237 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+    E  +    A++ K  F+ ++S+++R+P+  IIG   L++ +       K  +Y
Sbjct: 359 KAKNIAIEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGIISLIRHN--AGDKEKVIEY 416

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I+ SS  LL ++ND+LD++ ++AG     YS   + D + E+     ++ +E N   
Sbjct: 417 ADKIAISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDSIEELNTIFHSQANEKNQSF 476

Query: 670 KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDN----GDFIF 721
            +I+ G L       D+  L+QIFS +LSNA+ ++ +G  +  I + +  N    G + F
Sbjct: 477 -IITKGNLKHEWVNGDKVHLMQIFSNLLSNAIKYTQEGGIIQFIAEESETNSSTYGKYHF 535

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            V +NG  +  D  +++F+ F    ++   + +G GLG++I ++ +   GG + + S
Sbjct: 536 IVSDNGMGMSADFKETIFDAFTRAESSVTNKIQGTGLGMAITKNLVESMGGTIEVES 592


>gi|21243756|ref|NP_643338.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
 gi|21109344|gb|AAM37874.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1189

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 10/225 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+ KQ  Y E I  + 
Sbjct: 813  KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDIKQRSYTESIRRAG 869

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL LVND LDLA +++G ++L+     +  L+ EV   +A    E  +R   +  G L
Sbjct: 870  AHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVGALMAPLAQERGLRFS-LEIGLL 928

Query: 678  GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
            G   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  + 
Sbjct: 929  GDITASGDCTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINAEQ 988

Query: 735  CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F RF   +  R   R  G GLGL+I +      GG + + S
Sbjct: 989  KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVIS 1033


>gi|95931127|ref|ZP_01313852.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132817|gb|EAT14491.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 588

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 162/377 (42%), Gaps = 68/377 (18%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLW---------------------KTEENRLSP 476
           + I  +S+G+ V   DGR++L NPA   L                      +   N L P
Sbjct: 249 DIITSISDGLLVTDSDGRVELVNPAAEELLDIPAANLIGQTLTAILQQASVEDHSNFLKP 308

Query: 477 GTHIRNIAATCSRYYNESDG--WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           G    NI  +     N  DG    + A      +D+R S +  L LL D+  E+ I    
Sbjct: 309 G----NIGHSAQIKLNTQDGSLRTVHARTAAVHNDQRCSGEIVL-LLHDNTEEHRI---- 359

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                                          D +K+ F+   ++ L++P+T I G+++LL
Sbjct: 360 -------------------------------DRMKSEFLSTATHNLKTPITAITGYSELL 388

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNE 653
            +    S N +Q +++ YI   +  L  L++++LD++ V++G  ++L  S +    L+NE
Sbjct: 389 MSQDQLS-NDEQQEFLAYIHDKAWQLNKLIDNLLDISRVESGREVRLEKSDVKAQTLINE 447

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++    ++        +      L     D  +++ +   ++SNA+ FS  G  + L   
Sbjct: 448 IEAFCDSQQTRCEFHDQFEQTDSL--LYIDLSKIVLVMENLISNAIKFSPGGGRISLTGN 505

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +    +   + + G  + +D C  VF+RF  ++      +G GLGL++V+  +  HGG V
Sbjct: 506 KTGNSYEIKITDEGIGMSDDECCQVFDRFYRADVSESAPQGFGLGLTLVKQLVEAHGGEV 565

Query: 773 SISSSDEGVTTINCRIP 789
            + S     TT++ ++P
Sbjct: 566 HVHSIPRQGTTVSFQLP 582


>gi|294665212|ref|ZP_06730511.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605035|gb|EFF48387.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 636

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+   S+ELR+PL  I+G+  +L+   +        +++++I  +   LL L+
Sbjct: 272 ANRAKTEFLSRSSHELRTPLNAILGYAQVLE---MDLPEPDHRRHLQHILGAGRHLLGLI 328

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ++LD+A ++A  + L+   I +   ++E    IA    ++ I ++  S     +  AD 
Sbjct: 329 TELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKHGIALQPTSIDGPWTVRADA 388

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QRL Q+   +LSNA+ F+  G  V + A  D      +V + G+ +     + +F  F  
Sbjct: 389 QRLRQVLLNLLSNAVKFNRTGGQVQVSAQADGEQVRITVADQGAGLTPAQIERLFTPFER 448

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             A R    G GLGL++ +  I   GG + + SS  G 
Sbjct: 449 LGAERSAVEGTGLGLALSKRLIEAMGGQIGVDSSSNGA 486


>gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
 gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15]
 gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
 gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
          Length = 918

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|227484934|ref|ZP_03915250.1| two-component sensor histidine kinase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237089|gb|EEI87104.1| two-component sensor histidine kinase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 488

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 2/234 (0%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           +E + K +++KN F+  VS+ELR+PLT+I G+   L++  +       SQ ++ I +   
Sbjct: 252 SENIVKREDMKNEFISSVSHELRTPLTSIKGWAITLQSDTIQKDPEMVSQGLKIIESEGD 311

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  +V D+LD + + +   K N   I + DL+ +V   +  +     I+    +  K  
Sbjct: 312 RLSMMVEDLLDFSRLSSSTFKYNKDKIDIVDLVQQVHTQLYPRCQSEGIKFSFTTFYKSL 371

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD  R+ ++F  I+ NA+ F+  G  + +    ++GD   SVK++G  I ED    V
Sbjct: 372 FVYADINRMKEVFINIIDNAIKFTDLGGHIDITIDLNDGDIEVSVKDDGEGIKEDEIAFV 431

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            ++F   +    +   GLGLSI E  +  H G + I S     T ++  IP  E
Sbjct: 432 ASKFYKGS--SSKSQTGLGLSICEEIVKAHDGKLIIKSKYGMGTVVSVVIPRLE 483


>gi|39656325|gb|AAR29885.1| putative histidine kinase HHK6p [Cochliobolus heterostrophus]
          Length = 1364

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 122/238 (51%), Gaps = 12/238 (5%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++A  +K+ F+ ++S+E+R+P+  +IG ++LL       LN +Q +  E I  S+  L
Sbjct: 728 AAKEASRMKSQFLANMSHEIRTPIAGVIGMSELLFDM---DLNEEQKECAENIHRSANSL 784

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
           L ++NDILD + V++G + +      L+ +L +V + +A   +   +  + +   ++ S 
Sbjct: 785 LTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMAFAANRKGLEYQSLIQDEVQSD 844

Query: 680 --FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPED 733
              + D  RL QI + +L+N++ F+S G    S  I    ++     FS+ + G  I E+
Sbjct: 845 LRVIGDPGRLRQILTNVLTNSIKFTSVGTVQLSVSISHETKETVTVNFSIVDTGIGIEEE 904

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + K +F  F        RR  G GLGL+I ++ + L  G + + S     TT    IP
Sbjct: 905 VRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 962


>gi|89098509|ref|ZP_01171392.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086754|gb|EAR65872.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 376

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 13/245 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           ++E+A+ E    +RKA+++KN  V +V+++LRSPLT+IIG+ +L+   +      +   Y
Sbjct: 130 KSEQAIVE----VRKAEQLKNELVTNVAHDLRSPLTSIIGYLNLINEDRYQD-EVELRHY 184

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+  +  L +L++DI +   +           I L +L+N++      ++ +  +  
Sbjct: 185 IQVITDKTAGLHSLIDDIFEYTYMQNQQALFEKHPIDLEELMNQLAVQSRVQLEDAGMEW 244

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNN 726
           +   +G     V  D  +L+++F  ++ NA+ +  +G    +IL     N +    V N 
Sbjct: 245 RQFLEGDEPPIVLGDGGKLIRVFENLIQNAVRYGREGKYLDIILGGTGHNVE--IQVANY 302

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G +IP      +F RF  V  +      G GLGL+I +S I LHGG +  + S  G T  
Sbjct: 303 GPAIPGAELPHIFERFFRVEKSRSHFTGGSGLGLAIAKSIIELHGGTIE-AKSRPGRTAF 361

Query: 785 NCRIP 789
             R+P
Sbjct: 362 IIRLP 366


>gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 956

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   +AER L +  +   ++  +K+ F+  +S+E+R+P+  I G   LL  S    LN
Sbjct: 550 DVTQQRQAERYLQDAKQKAEESAHMKSGFLASMSHEIRTPIHGISGVLQLLTNS---PLN 606

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+   + S   LL++VNDILD + ++AG ++++     L + L  ++   A    
Sbjct: 607 DEQKHYLSLATFSIQGLLHIVNDILDFSKIEAGQLQIDDQPFDLLETLESLQSQYAILCQ 666

Query: 664 ENNIRIKVISDGKLGSF---VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716
           E  +R+       L  F   + D  R  QI S ++ NA+ F+ KG    +T +     D 
Sbjct: 667 EKGLRLHF--HFNLQGFHVVIGDSVRFRQILSNLIGNAVKFTEKGEIDVTTTLEHTNDDK 724

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                +VK++G  I +D    +F+ F        R+  G GLGLSI +    L  G + +
Sbjct: 725 LRLTCAVKDSGIGIAKDKQAGIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELMDGEIHL 784

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     +T    I  KE
Sbjct: 785 ESEKGEGSTFTFNIMLKE 802


>gi|329907837|ref|ZP_08274716.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546908|gb|EGF31823.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 375

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 10/208 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  IIG TDL   ++L   + +Q +Y+  +  SS  LL ++NDILD + +++
Sbjct: 1   MSHEIRTPMNGIIGMTDLALDTRL---DGEQREYLTLVKTSSAALLTIINDILDFSKIES 57

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKI 694
           G ++L +    L  LL  + + +A +  E  + + V +     G  + D  RL Q+ + +
Sbjct: 58  GKLELEHIEFDLPALLGSIVKLLALRSTEKGLHLSVDVGHDVPGMLLGDPGRLRQVLTNL 117

Query: 695 LSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           + NA+ F+++G     V L AA       +F+V + G  I  D   S+F  F        
Sbjct: 118 IGNAIKFTAQGEITVQVTLDAASAGTVRLVFAVSDQGIGIAADKQASIFEAFTQADTSTT 177

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISS 776
           R+  G GLGL+I    +    G + +SS
Sbjct: 178 RQYGGTGLGLAISSQLVAAMDGTLGVSS 205


>gi|225568759|ref|ZP_03777784.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM
           15053]
 gi|225162258|gb|EEG74877.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM
           15053]
          Length = 1113

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 125/241 (51%), Gaps = 12/241 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+ AL E   ++ +A++ K+ F+  +S+++R+P+  I+G  ++ + S       + +  
Sbjct: 706 KAKCALEEAYASVNRANQAKSDFLSRMSHDIRTPMNAIMGMAEIARNST--GDEKRIADC 763

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S   LL L+N++LD++ +++G M L+   IVL+  L EV + +   + + +   
Sbjct: 764 LSKIDLSGRHLLGLINEVLDMSKIESGNMSLSEDVIVLDSFLREVSEIVRPDVEQKSQHY 823

Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFS 722
            V   +GK  +   D  RL QI   +LSNA+ ++ +G  +       L   R  G F F 
Sbjct: 824 TVTRKEGKHSAVYGDTVRLKQILINLLSNAVKYTQEGGHISVSLEEKLSGERGVGCFEFV 883

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779
           V+++G  + ++    +F  F    ++   Q +G GLG++I  + + +  G + + S  DE
Sbjct: 884 VEDDGIGMSKEFIDKLFLPFERAEDSRVSQIQGTGLGMAITLNLVQMMNGTIQVDSRLDE 943

Query: 780 G 780
           G
Sbjct: 944 G 944


>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
 gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
          Length = 1629

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 41/302 (13%)

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            K+ Q    L S   +++ +   P A   ++  ++T   + ER L E  E   +A + K  
Sbjct: 872  KTKQQIPVLCSAFTIKHPVTGKPMAYAAIS-SDITIRKKVERELIEAREEALRAAQAKAE 930

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+P+  +IG T LL  +    L ++Q +YVE I +S   LL ++NDILD +
Sbjct: 931  FLANMSHEIRTPMNAVIGMTGLLLDT---PLTAEQREYVETIRSSGDALLTVINDILDFS 987

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQI 690
             +++G ++L      L + + E     +    E ++ +      K+ + V+ D  RL QI
Sbjct: 988  KIESGKLELEQYPFTLRNAIEECIDIFSATAAEKHLELVYFIHEKVPTKVSGDVTRLRQI 1047

Query: 691  FSKILSNAMDFSSKGSTVI---LKAARD-NGD---------------------------- 718
               ++SNA+ F+  G  V+   L+  R+ N D                            
Sbjct: 1048 LVNLVSNAVKFTKSGEVVLEVQLQQPREQNADERLMVFHDHDDDKYNYPQAALQQFDDKK 1107

Query: 719  --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F+V++ G  IP D  + +F+ F        R+  G GLGL+I +    L  G + +
Sbjct: 1108 CTLHFTVRDTGIGIPADRLERIFHSFSQVDASTTRKYGGTGLGLTISKHLCELMNGKMWV 1167

Query: 775  SS 776
             S
Sbjct: 1168 ES 1169


>gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1238

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      + 
Sbjct: 751 SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNSL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D    +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGK 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|1237202|emb|CAA65612.1| histidine kinase [Dictyostelium discoideum]
          Length = 1670

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 22/255 (8%)

Query: 536  AQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +  +TFV +++   +AE A  E       A  +K  F+ ++S+ELR+P   I+G + LL
Sbjct: 1016 TEQCITFVFDLSRYRQAEMAAIE-------ATRLKTQFITNISHELRTPCHGIVGMSQLL 1068

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              S+L    + Q   ++ I  S+  L++L+NDILD + ++ G + L   +  L  ++ EV
Sbjct: 1069 LDSQL---TNTQRDNIDSIKRSTDSLISLINDILDFSKLEYGKVTLENESFELLPMIEEV 1125

Query: 655  KQSIATKMHENNIRIKVI--SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
              S AT  +   I +  +   D  +   +  DR  L ++   ++ NA+ F+  G  V+L+
Sbjct: 1126 LDSQATAANRKGIDLIFVMGRDYPVPPVIFGDRNSLKKVLLNLVGNAVKFTETG-FVLLE 1184

Query: 712  AARD--NGDFI---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
             + D  +GD I   F+VK++G  IPE+  + +F  F  +  +   +  G GLGLS  +  
Sbjct: 1185 ISTDYESGDQISLRFTVKDSGIGIPENKIEQIFVPFGQIDGSFSRKYGGSGLGLSFCKEL 1244

Query: 765  INLHGGHVSISSSDE 779
            + L GG++ + S D+
Sbjct: 1245 VALMGGYIRVESGDQ 1259


>gi|83814296|ref|YP_444970.1| two-component hybrid sensor and regulator [Salinibacter ruber DSM
           13855]
 gi|83755690|gb|ABC43803.1| two-component hybrid sensor and regulator [Salinibacter ruber DSM
           13855]
          Length = 912

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 116/227 (51%), Gaps = 4/227 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++K++ + ++S+E+R+PL ++IG  DLL+   +   L  + +   E I  S   L   ++
Sbjct: 685 QLKSAMLANMSHEVRTPLMSMIGSADLLREDLEEAGLEGEPADMAEQIFRSGQRLRETLD 744

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            +L+L+ +++G   L+  +  L+ ++ EV Q +  + HE  I+++V S G       D  
Sbjct: 745 SVLELSRLESGAYTLDDDSAYLDVVVREVAQELNLRAHEKGIQLEVGSPGASVEAGLDET 804

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            + +I   ++ NA+ F+ +G  V ++    D    + +V++ G  I E+  + +F+ F  
Sbjct: 805 AVRRIVRNLVENAIKFTPEGGKVQVRVEPEDEETALLAVEDTGVGIAEEAREDIFDAFKQ 864

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    R   G GLGLSIV+    + GG + + S     T    R+P
Sbjct: 865 ESEGLGREYEGSGLGLSIVDRLTTMLGGTIEVESEKGTGTRFAVRLP 911


>gi|148263614|ref|YP_001230320.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397114|gb|ABQ25747.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 832

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L++ D +K+ F+  +S+ELR+PL +IIGF+ ++    +G +N++Q + +  I     
Sbjct: 590 NTKLKEFDRLKSMFIASMSHELRTPLNSIIGFSSVILNEWIGPVNAEQKENLAIILRCGK 649

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LLNL+ND++D++ ++AG ++         DL++E    +   M E  + ++V +  +  
Sbjct: 650 HLLNLINDVIDVSKIEAGKIESVAEEFDFYDLISEAVGLVRKDMEEKGLDLQVAATHQ-- 707

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKA---ARDNGDFIFSVKNNGSSIP 731
               DR+RLLQ    +LSNA+ F+  G     T I+     A + G    SV + G  I 
Sbjct: 708 QMHMDRRRLLQCVLNLLSNALKFTEHGGLTVETRIMPCPGEAPEAGVAEISVTDTGIGIR 767

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF-INLHGGHVSISSSDEGVTTINCRI 788
           E+    +F  FV  A   Q    G GLGL +       +  G + ++S     +    RI
Sbjct: 768 EEDLPKMFQPFVRLASPLQATVPGTGLGLYLTRKLAAEVLKGDILLTSEYGKGSRFTLRI 827

Query: 789 PSK 791
           P +
Sbjct: 828 PVR 830


>gi|117926355|ref|YP_866972.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117610111|gb|ABK45566.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 550

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 133/261 (50%), Gaps = 13/261 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           M+TF    +S   ER + E++ A+      ++  K+ F+  +S+E+R+PL  I G  +LL
Sbjct: 145 MITFECYMES--RERTIMEQSRAMVALAESSNRTKSMFLAAMSHEIRTPLHAINGLAELL 202

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +      LN  Q  YV  I  + + LL L+NDILD + ++AG ++L    + +  L++E 
Sbjct: 203 ERE---ELNQDQKHYVHIIYRAGSRLLALINDILDFSRLEAGRIELESLVVEVRPLVHET 259

Query: 655 KQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + ++ K  +  + ++   + ++  + ++D  RL Q+   ++ NA+ F+  G  V L+ +
Sbjct: 260 MEMLSFKAKDKGLALQWTLEPQVPQWMMSDPTRLGQVLVNLVGNAIKFTQSGE-VALEIS 318

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                    V++ G  I ED  + +F  F  +     RR  G GLGLSI +  + L GG 
Sbjct: 319 VAEQQLCVMVRDTGLGIAEDKQQIIFEPFSQSDITISRRFGGTGLGLSITKQIVALMGGT 378

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +S+ S     +    R+P KE
Sbjct: 379 ISVQSRLGEGSRFYVRLPLKE 399


>gi|311696322|gb|ADP99195.1| multi-sensor signal transduction histidine kinase [marine bacterium
           HP15]
          Length = 607

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 16/225 (7%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ DE+KN F+  VS+ELR+PLT+I G   L+     G +N K +Q +     +S  L +
Sbjct: 372 QRIDEMKNQFISTVSHELRTPLTSISGSLGLILGGATGPVNEKTAQMLTIAQRNSKQLRH 431

Query: 623 LVNDILDL-------ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           L++D+LD+        T DA + +L+ +     + +  + +    ++  N +   + ++ 
Sbjct: 432 LIDDLLDIEKLVSGNVTFDASVQRLDEAAEAAIEEIQPMARKRGVEVQLNVLERDLYAN- 490

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D  RL Q  + +LSNA+ FS  G+ V +  ++   +    V++ G  +PE   
Sbjct: 491 ------YDIVRLTQAITNLLSNAIKFSPAGAAVRVDLSKSGDEAKLEVRDQGPGVPESFR 544

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             +F +F        R   G GLGL+I    +   GG V   S +
Sbjct: 545 DRIFQKFAQANSTSSRTKEGTGLGLAITRELMQAMGGEVDFESEE 589


>gi|303240404|ref|ZP_07326922.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592131|gb|EFL61861.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 465

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+EL++PLT I G+++ +      + + K++  VEY++  +T L NLV+++L
Sbjct: 243 QKKFVSNVSHELKTPLTAIKGYSEYMIDEVNDNPDLKRA--VEYLNIEATRLTNLVDELL 300

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            L+ +D+       S + +++ L E    +  +    +++I++  + +L     D+++LL
Sbjct: 301 LLSCMDSSKETFQLSRLNISETLIEAISKMKFREERYDVKIQLEVEDEL-YVCGDKEKLL 359

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+F  IL N++ FS KGS+V +K  R++      V + G  IP++    VF RF    + 
Sbjct: 360 QVFINILDNSIKFSQKGSSVKVKLEREDSLVKMIVFDKGIGIPQEEISRVFERFYRAENV 419

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               G GLGLSI +  + +  G ++I S     T +   +P
Sbjct: 420 SGIGGTGLGLSISKEIVQVLNGKLNIESHFGQGTKVYIELP 460


>gi|296128577|ref|YP_003635827.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
 gi|296020392|gb|ADG73628.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
          Length = 515

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 555 LTEKNEAL--RKADEIK-NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQY 609
           L++  EA   R A E +   FV   S+ELR+PL  + G+ +L    ++G+  + +  +  
Sbjct: 246 LSQIEEAFDARTASEARMRRFVADASHELRTPLATLRGYAELY---RMGATTTPEQVADT 302

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S+T + +LV D+L LA +D G        + L  L  +    +     +  +R+
Sbjct: 303 MARIEGSATRMGSLVEDLLALARLDEG-RGGQTGPVDLTVLAADAVSDLRALDPQRPVRL 361

Query: 670 KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKN 725
           + I+ G       V D  RL Q+ + ++ NA   +   + V  ++ A  D+G  +  V++
Sbjct: 362 ETIA-GPAAPRVVVGDEARLRQVLANLVGNAARHTPPATPVEIVVGAGADDGTAVLEVRD 420

Query: 726 NGSSIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  IP +    VF RF   +  RG+   G GLG++IV + +  HGG V++ ++  G  T
Sbjct: 421 HGPGIPPEHAARVFERFYRVDPSRGRDSGGSGLGMAIVAAIVASHGGTVAVLTTPGGGAT 480

Query: 784 INCRIP 789
           +   +P
Sbjct: 481 VRVELP 486


>gi|228913013|ref|ZP_04076653.1| hypothetical protein bthur0012_2580 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846633|gb|EEM91645.1| hypothetical protein bthur0012_2580 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 314

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 132/264 (50%), Gaps = 10/264 (3%)

Query: 535 NAQTML------TFVNVTDSVRAERALTEKNE-ALRKADEIKNSFVQHVSYELRSPLTNI 587
           N QT L      +F N+  S+    A  EK     ++++E +   +  +S+++R+PLT+I
Sbjct: 45  NLQTRLFTSNDQSFHNIVFSINELIAELEKVRIKAKRSEESRKQLLSSISHDIRTPLTSI 104

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG+ D LK     S   KQ +Y++ +   S  L +LV++I ++A +DA    L    +  
Sbjct: 105 IGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKHLVDEIFNMAKLDANEFPLKEEKLDF 163

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++  EV      ++ ++NI+++V+        +AD   L++I   ++ NA+ +   G  
Sbjct: 164 SEVTREVLIEFLPEISKHNIKLQVLMPESTCPIIADHLSLMRIIGNLMKNAIYYGKDGKI 223

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQR-RGVGLGLSIVESFI 765
           + ++    +  +   + + G  IP+   ++VF R + S   R     G GLGLSI ++ +
Sbjct: 224 IGVELLETDAAYELLIWDKGPGIPKHDLQNVFERMYRSEQSRNSSFGGSGLGLSISKALV 283

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             +GGH+ + S     TT    IP
Sbjct: 284 ERNGGHIWVESIPWERTTFGFSIP 307


>gi|218781752|ref|YP_002433070.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763136|gb|ACL05602.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 886

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 15/235 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ +VS+ELR+PL +II  + +L  ++  +L     +  + I +S   LL L+N++L
Sbjct: 477 KSQFLANVSHELRTPLNSIILLSGILCENREKNLTDSDLECAQAIQSSGKALLLLINEVL 536

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           DL+ ++AG M +N S       +  +++          +   V  D  +   V +D QRL
Sbjct: 537 DLSKIEAGKMAVNTSFFETKTFVQAIEREFLPLAKNKGLDFSVRMDADIPLRVQSDSQRL 596

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-----------FIFSVKNNGSSIPEDMCK 736
            Q+    +SNA+ F+ +GS V+L+ +R   +             FSV ++G  IP++  +
Sbjct: 597 EQVLRNFISNALKFTKQGS-VVLRVSRPRKEDALPGYSPSKCAAFSVTDSGIGIPQEKME 655

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  F        R   G GLGL+I      L GG V   S     +T    IP
Sbjct: 656 EIFEAFTQADGTTSREFGGTGLGLTISREIARLIGGAVRAESEPGAGSTFTLVIP 710


>gi|167760790|ref|ZP_02432917.1| hypothetical protein CLOSCI_03175 [Clostridium scindens ATCC 35704]
 gi|167661677|gb|EDS05807.1| hypothetical protein CLOSCI_03175 [Clostridium scindens ATCC 35704]
          Length = 468

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+  ++ +  FV +VS++ RSPLT+I G+ + +    +        +Y++ I   +  L 
Sbjct: 239 LKDMEDYQKKFVANVSHDFRSPLTSIKGYVEAMTDGTIPP--EMHEKYLKIILFETERLT 296

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L  D+L L   D   + L      +++++  V  +      +  I I++I   K  +  
Sbjct: 297 DLTQDLLTLNEFDTKNILLTKEVFDIHEMIKNVAAAFEGTCTQKKISIELIFATKYLNVT 356

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFN 740
           AD++++ Q+   +L NA+ FS   STV ++   + GD I+ SVK+ G  IP +    ++ 
Sbjct: 357 ADKRKIQQVLYNLLDNAIKFSETDSTVTIETT-ERGDKIYTSVKDYGIGIPRNALNKIWE 415

Query: 741 RFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           RF  ++  RG+ ++G GLGL+IV+  I  HG ++++ S+ EGV T
Sbjct: 416 RFYKTDLSRGKDKKGTGLGLAIVKEAIQAHGENINVVST-EGVGT 459


>gi|166711696|ref|ZP_02242903.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1364

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 15/244 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + + + + + +
Sbjct: 675 PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSL 734

Query: 663 HENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
               + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 735 SAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGEL 852

Query: 773 SISS 776
            + S
Sbjct: 853 EVES 856


>gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1582

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGS 601
            VN+  + + E+ L    +    A+  K+ F+ ++S+E+R+P+  IIG + L L+T     
Sbjct: 815  VNIDAAKQLEKELELSKQKADSANRAKSDFLANMSHEIRTPMNAIIGMSHLALETD---- 870

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+ KQ  Y++ ++ S+  LL ++NDILD + ++AG + +      L D+L +V   +  K
Sbjct: 871  LDRKQRNYIDKVNRSAESLLGIINDILDFSKIEAGKLDIEKIDFSLEDVLEDVSDLVGFK 930

Query: 662  MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----N 716
              +  I +   ++  L   F  D  RL Q+ + + +NA+ F+ +G   I   A      N
Sbjct: 931  AKDKGIELLFNTESSLPFYFNGDPLRLSQVLTNLSNNAIKFTEQGEVQIKVYAHSINETN 990

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
             +  F + + G  + ++    +F  F        R+  G GLGL I ++ + L GG +S 
Sbjct: 991  IELAFEISDTGIGMSKEQQLKLFKAFSQADSSTTRKHGGTGLGLVISQNLVELMGGVISF 1050

Query: 775  SSSDEGV 781
              S+EGV
Sbjct: 1051 -ESEEGV 1056


>gi|294626148|ref|ZP_06704755.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599597|gb|EFF43727.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 636

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+   S+ELR+PL  I+G+  +L+   +        +++++I  +   LL L+
Sbjct: 272 ANRAKTEFLSRSSHELRTPLNAILGYAQVLE---MDLPEPDHRRHLQHILGAGRHLLGLI 328

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ++LD+A ++A  + L+   I +   ++E    IA    ++ I ++  S     +  AD 
Sbjct: 329 TELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKHGIALQPTSIDGPWTVRADA 388

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QRL Q+   +LSNA+ F+  G  V + A  D      +V + G+ +     + +F  F  
Sbjct: 389 QRLRQVLLNLLSNAVKFNRTGGQVQVSAQADGEQVRITVADQGAGLTPAQIERLFTPFER 448

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             A R    G GLGL++ +  I   GG + + SS  G 
Sbjct: 449 LGAERSAVEGTGLGLALSKRLIEAMGGQIGVDSSSNGA 486


>gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1407

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 12/217 (5%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ ++S+E+R+P+  IIG + L   +    L  +Q  Y++ I  S   LL ++NDI
Sbjct: 681 MKSDFLANMSHEIRTPMNGIIGMSHLALNT---DLTPRQRDYLKKIQQSGQNLLRIINDI 737

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQ 685
           LD++ ++AG + + +S   L + L +V   I  K  E  +   + + SD  + + + D  
Sbjct: 738 LDISKIEAGKLSIEHSEFELENTLADVVALIGEKTTEKGLELILDIASDVPV-NLLGDSL 796

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNR 741
           RL Q+     SNA+ F+ +G  VI    R+  +      F V++ G  +  +    +F  
Sbjct: 797 RLGQVLLNYASNALKFTEQGEIVIAVRLRERSEDQVLLYFEVRDTGIGLSSEQISRLFTP 856

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F        RR  G GLGL+I     +L GG   ++S
Sbjct: 857 FTQGDASTTRRYGGTGLGLAICRQLADLMGGEAGVNS 893


>gi|229016308|ref|ZP_04173254.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
 gi|229022547|ref|ZP_04179077.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228738742|gb|EEL89208.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228744955|gb|EEL95011.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
          Length = 896

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFMIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARD----NGDFI-F 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +          + D    + D+I  
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I  +  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
 gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
          Length = 918

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 959

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT   + E+ L E  E   ++  +K+SF+  +S+E+R+P+  I G   LL  S+L    
Sbjct: 552 DVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLLGGSEL---T 608

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+     S   LL++VNDILD + ++AG +++  S   + + L  ++   A    
Sbjct: 609 GEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIEESPFDILESLENLQSQYAILCQ 668

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E  + +    D +    V  D  R  QI S +L NA+ F+  G   +      N D    
Sbjct: 669 EKGLELHFHFDLQGYHVVQGDDVRFRQILSNLLGNAVKFTDTGYIEVTTCIEKNPDNTLR 728

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + SVK+ G  I +D   ++F+ F        R+  G GLGLSI +    L GG + + S
Sbjct: 729 LLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGLGLSISKQLCGLMGGDIKLES 788


>gi|320334937|ref|YP_004171648.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
 gi|319756226|gb|ADV67983.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
          Length = 1510

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 15/251 (5%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            A+  L  +N T   R E     +  AL+ A+    +F   VS++LR+PL +I+GF DLL+
Sbjct: 859  ARRELQHLNQTLEARVE----SRTAALQDANRELEAFSYSVSHDLRTPLRHIVGFADLLR 914

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                G+L+ K ++Y+  I+ ++T +  L++D+L+ + +  G  +L  + + L +L  E +
Sbjct: 915  KDT-GTLSDKSARYLGIITDAATKMSTLIDDLLEFSRM--GRQELRRAPVNLTELAEEAR 971

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAA 713
              +       +++ ++     L +  ADR  + Q+F  +L NA+ +S K   + + ++A 
Sbjct: 972  ADLQPDAEGRDVQWRL---HDLPTVPADRALMKQVFVNLLGNALKYSGKQAHARIEVRAE 1028

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHV 772
            +        V +NG          +F  F    HR     G G+GL+ V   IN HGG V
Sbjct: 1029 QGTDSVTVHVSDNGVGFDPAYADRLFGVF-QRLHRADEFNGTGIGLANVRRIINRHGGTV 1087

Query: 773  SI-SSSDEGVT 782
            +  S+  EG T
Sbjct: 1088 NAHSTPGEGAT 1098



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 112/239 (46%), Gaps = 23/239 (9%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L E+   L +A +++ +F+   S+ELR+PLT ++G+   L+        +  +Q +   +
Sbjct: 1289 LEEQAGQLEEALKLQKTFLAETSHELRTPLTALLGYLRRLER------EAGATQTLHDAA 1342

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              +  +  LVND+L L+  +  +  +    + L D++  V +    ++   +I +     
Sbjct: 1343 RVAENMTRLVNDLLQLSRGEL-VQSIEPHFVNLADIVRAVGRDYGIRVDSPDIEV----- 1396

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  VAD  RL Q+F  ++SNA+        V + A     D    V + G  +P+D+
Sbjct: 1397 ------VADPGRLTQVFVNLVSNAIRICGTPDKVRVYAEDHGQDITIDVIDTGPGVPDDV 1450

Query: 735  CKSVFNRFVSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               +F++F    +RG+  G  GLGL+I +  +  HGG + +  +  G  T    +P  E
Sbjct: 1451 KPRIFDKF----YRGKEAGSAGLGLTIAQQVVQAHGGRIEVLDTPGGGATFRVTLPGLE 1505


>gi|257454753|ref|ZP_05620007.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus
           SK60]
 gi|257447873|gb|EEV22862.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus
           SK60]
          Length = 1101

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 117/218 (53%), Gaps = 7/218 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A   A + K++F+ ++S+ELR+PL +I GF +LL  S+ G LN++Q  YV+ I  SS  
Sbjct: 335 DAAVSASQTKSAFLANISHELRTPLNSIDGFINLL--SRHGGLNAEQDLYVQTIRKSSAH 392

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           LL LVND+LD + ++AG + L+     L   + +V   ++    E ++R+ V   D    
Sbjct: 393 LLALVNDVLDFSKIEAGKLVLDSHEFDLYASIYDVVDMLSPLAAEKDLRLAVFFYDDVPH 452

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNNGSSIPEDMCK 736
             V D  R  Q+ + +++NA+ F+  G  ++  +  D+ D +   SV++ G  I  +  K
Sbjct: 453 YLVGDALRTKQVLTNLVNNAIKFTDDGEVIVRVSLDDDIDDLIHISVQDTGRGISPEHQK 512

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            +F  F        R+  G GLGL I +    L GG++
Sbjct: 513 VLFQSFSQGDPSITRQYGGTGLGLVISKQLTYLMGGNI 550


>gi|212543489|ref|XP_002151899.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
 gi|210066806|gb|EEA20899.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
          Length = 1319

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 17/244 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           N+ DS++     T   EA  +A+  K+ F+ ++S+E+R+P+  IIG T L L T  L   
Sbjct: 722 NLRDSIQRN---TAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPY 778

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +    V  ++ S   LL +++DILD++ ++A  M +      +   +    +++A K 
Sbjct: 779 PREMLNVVHNLANS---LLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKA 835

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAAR 714
           +E  + +    D  +  +V  D  RL QI   ++ NA+ F+  G   +        + AR
Sbjct: 836 NEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSEREQCAR 895

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D   F FSV + G  I ED    +F+ F        RR  G GLGLSI +  +NL GG V
Sbjct: 896 DEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 955

Query: 773 SISS 776
            ++S
Sbjct: 956 WVTS 959


>gi|330977289|gb|EGH77244.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 595

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E K     +  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLQEAKVRFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 PNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|312131852|ref|YP_003999192.1| integral membrane sensor signal transduction histidine kinase
           [Leadbetterella byssophila DSM 17132]
 gi|311908398|gb|ADQ18839.1| integral membrane sensor signal transduction histidine kinase
           [Leadbetterella byssophila DSM 17132]
          Length = 421

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 5/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++  E++  F+ ++++E ++P++ I   TD+L T K+ S   +  +YV+ I + +  L N
Sbjct: 193 KRLSEVQRDFINNMTHEFQTPISTIKIATDVLATDKITSQPERLKKYVDIIRSENNRLKN 252

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            V  +L  A +  G +++N     L+ L+ EV +SI  ++ E+     +  D +  S  A
Sbjct: 253 QVEAVLSTAKIGKGNIQINIQLQDLHALIWEVTESIRVELGED---FHLNLDAQKTSIKA 309

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+  L+ I   +L NA  +S     + LK   D+     +V++ G  I ++    +F+RF
Sbjct: 310 DKMHLMNIIRNLLDNACKYSGDHPEITLKTLNDDKYIYVAVEDKGIGIAKEHQAKIFDRF 369

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             V   +    +G GLGL+ V+  + LH   + +SS     TT   +IP  E
Sbjct: 370 YRVPTGNVHNVKGFGLGLNYVKEMVRLHKWEIDVSSELGHGTTFVIKIPISE 421


>gi|307721710|ref|YP_003892850.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979803|gb|ADN09838.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 1053

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 19/236 (8%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA ++A E K+ F+ ++S+E+R+PL  I+GFT+LLK +    L  +Q ++VE I  SS  
Sbjct: 380 EAAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDT---GLKEEQQEFVEIIEKSSEN 436

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENNIRIKVISDGK 676
           LL ++N+ILDL+ +++   KL    ++ N +  E + ++   A +  E +I +    D +
Sbjct: 437 LLEIINNILDLSKIESN--KLEIEDVIFNPI-EEFESAVDVYAVRASEKHIDLGCFIDPE 493

Query: 677 L-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFI-FSVKNNGSS 729
           L      D  ++ ++   +LSNA+ F+S    +      L++ ++    + F V+++G  
Sbjct: 494 LEQPLKGDPTKIKEVVINLLSNAVKFTSSSGAINVDIRKLQSPQEGTTRVKFEVQDSGIG 553

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
           +  +    +F  F        R+  G GLGL+I   FI L GG + + S   EG T
Sbjct: 554 VTSEQKSRIFEAFSQADTSITRKYGGTGLGLTISARFIELMGGQLDLHSEPGEGTT 609


>gi|254417905|ref|ZP_05031629.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196184082|gb|EDX79058.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 517

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 25/248 (10%)

Query: 551 AERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           A RA T++ E    +A +    F++ +S+E+R+PL  ++G  +LL+ ++L   +  Q  Y
Sbjct: 3   ARRAATKRIETQATQAVDPAQQFLRLMSHEMRTPLNGVLGMINLLQRTRL---DGAQRAY 59

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E    S+  LL LVND+LD A ++AG ++ + + + L  L+  V + ++ + H+  + I
Sbjct: 60  AENARQSAEHLLGLVNDLLDYARLEAGSLEFDLAPVDLEGLVRGVAELLSPRAHDKGLEI 119

Query: 670 --KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------DNG-- 717
              V +D      +AD  RL Q+   +  NA+ F+  G  V L   R        D+G  
Sbjct: 120 VWSVAADAP--DILADEGRLRQVLFNLAGNAVKFTETGG-VRLSVERVTPDPTDMDDGRV 176

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              F + + G  +P +    +F  F     S+A R    G GLGL++V       GG   
Sbjct: 177 RLAFIIDDTGPGVPAEARARIFEEFGHADSSDAVRHD--GAGLGLAVVRKLATAMGGTAR 234

Query: 774 ISSSDEGV 781
           +     G 
Sbjct: 235 VEDRPPGA 242


>gi|170720805|ref|YP_001748493.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169758808|gb|ACA72124.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1201

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 126/257 (49%), Gaps = 12/257 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           ++++++  +  + L E  +    A+  K++F+  +S+E+R+P+  +IG  +L +K +  G
Sbjct: 684 WIDISERRKLVQELREAKQLADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRAHQG 743

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            ++      +E    S+  LL L+ DILD+  +++G + L    + L  L+  V +    
Sbjct: 744 QIDRTS---LEVAHHSAKDLLGLIGDILDIVRIESGHLSLAPEPVDLAALVESVSRVFDG 800

Query: 661 KMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           +  +  +    VI+       + D  R  QI S ++SNA+ F+ +G   I    R+    
Sbjct: 801 QARQKGLAFDVVIAPSARCHVLLDPLRFKQILSNLISNAIKFTGQGQVRISLCLREEAPS 860

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFV-SNAH-RGQRRGVGLGLSIVESFINLHGGHV 772
                   V++ G  I +D  + +FN FV +N H +G R G GLGL+I  S   + G  +
Sbjct: 861 APPSLELEVRDTGIGIHDDDLQRLFNPFVQANPHSQGARAGTGLGLAICRSLCEMMGASL 920

Query: 773 SISSSDEGVTTINCRIP 789
           SI S  +  T +   +P
Sbjct: 921 SIKSVPDFGTQVRFSVP 937


>gi|116628743|ref|YP_813915.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC
           33323]
 gi|238852957|ref|ZP_04643356.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282852391|ref|ZP_06261733.1| PAS domain S-box [Lactobacillus gasseri 224-1]
 gi|116094325|gb|ABJ59477.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           gasseri ATCC 33323]
 gi|238834407|gb|EEQ26645.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282556133|gb|EFB61753.1| PAS domain S-box [Lactobacillus gasseri 224-1]
          Length = 621

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 116/236 (49%), Gaps = 10/236 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L        N    Q++  I   +  ++ 
Sbjct: 373 QKNEREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIA-PQFLHVIQDETERMIR 431

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-------QSIATKMHENNIRIKVISDG 675
           ++ND+L L+ +D G+ +++   + LND +N V        +S + KMH+    IK     
Sbjct: 432 MINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKREFPH 491

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  +++Q+   I++NA+ +S  G  + ++  +     I S+ + G  IP    
Sbjct: 492 QALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLGIPRKDL 551

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A   ++ G GLGL+I +  +  H G +   S++   +T    +P
Sbjct: 552 NKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISLP 607


>gi|17547798|ref|NP_521200.1| composite two component sensor histidine kinase and response
           regulator hybrid transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17430103|emb|CAD16788.1| probable composite two component regulatory (sensor histidine
           kinase and response regulator hybrid) transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 994

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 18/253 (7%)

Query: 549 VRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V AERA    L    +A   A   K+ F+  +S+E+R+P+  ++G  +LL  ++L     
Sbjct: 352 VTAERAQADALVSARQAAESALRAKDRFLATMSHEIRTPMNGVLGLVELLLQTRL---ER 408

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q + +  +  SS  LL++++DILD A ++A  + +  +   L  LL+     +A++ HE
Sbjct: 409 EQQRMMTLVQESSRALLHVLDDILDYAKIEADRLSITPAPTDLRALLDSTVGLLASRAHE 468

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDF 719
            ++ ++V  D  + + V+ D  RL Q+   +LSNA+ F+  GS  +    ++ A D    
Sbjct: 469 RSLAVRVDVDAAVPATVSVDGMRLRQVLCNLLSNAIKFTEHGSVRLSAKCMETAADTVHL 528

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           I  V + G  I  +   ++F  FV       HR  + G GLGL+I      L GG + + 
Sbjct: 529 IIRVTDTGIGIAPEAQATLFTPFVQADSTITHR--QCGTGLGLAISRQLARLMGGSLDMD 586

Query: 776 SSDEGVTTINCRI 788
           S+    TT+  R+
Sbjct: 587 STPNVGTTLTLRL 599


>gi|331016191|gb|EGH96247.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 1189

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 12/253 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           +++++D  +    L    E    A   K++F+  +S+E+R+P+  +IG  +L LK +  G
Sbjct: 673 WIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQG 732

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+      +E   +S+  LL+L+ DILD+A +++G + LN     L  L+  V +    
Sbjct: 733 ELDRSA---IEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDG 789

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
              + ++ + +  D ++ + V  D  R  QI S ++SNA+ F+  G   I   A DN D 
Sbjct: 790 LARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMGRVKIALQAVDNPDP 849

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHV 772
                  +V+++G  I  +  K +F  F    + GQ  R G GLGL I  S   + GG++
Sbjct: 850 QLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNL 909

Query: 773 SISSSDEGVTTIN 785
           S+ S     T I+
Sbjct: 910 SLDSEPGNGTRIS 922


>gi|322711971|gb|EFZ03544.1| putative histidine kinase HHK6p [Metarhizium anisopliae ARSEF 23]
          Length = 1403

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 124/235 (52%), Gaps = 20/235 (8%)

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +K+ F+ ++S+E+R+P+T ++G  +LL       L+ +Q  Y++ I +S+T LL ++NDI
Sbjct: 821  LKSQFLANMSHEIRTPITGVLGMAELLSHM---DLDEEQRDYIDNIQSSATSLLTVINDI 877

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-------F 680
            LD + V++G + +      L+ ++ EV + +   +   N+  +      +GS        
Sbjct: 878  LDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQ----SDIGSDIENDMVV 933

Query: 681  VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            + D  R+ QI + +L+N++ F+++G    S        D+ +  F V++ G  I ED+ K
Sbjct: 934  IGDPGRVRQIITNLLTNSIKFTNQGYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRK 993

Query: 737  SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F  F        RR  G GLGL+I ++ ++L  G + + S+ +  T  +  IP
Sbjct: 994  RLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIP 1048


>gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 670

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 153/337 (45%), Gaps = 54/337 (16%)

Query: 462 AFRSLWKTEENRLSPGTHIRNIAA---------TCSRYYNESDGWDLFAAIITSFDDERK 512
           AFR LW    +R++PG   R + A          C R+             I   D E+ 
Sbjct: 191 AFRGLW----SRIAPGCRKRVLEALRRSSWKPGRCERFE------------IELLDPEKG 234

Query: 513 S----LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           S     +       D+V     +            ++T+  + E +L    EA   A+  
Sbjct: 235 SRWFDFESEFSRDGDAVRAVGYV-----------ADITEHKQHEASLRMAAEAAEAANRA 283

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K+SF+ ++S+ELR+P+  IIG + L LKT     L ++Q +Y+  IS SST LL ++NDI
Sbjct: 284 KSSFLANMSHELRTPMNAIIGLSYLALKTD----LTTQQYEYISRISESSTALLGILNDI 339

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQ 685
           LDL  V+A  ++L  +   L   L  +   +  +     +   +++  D  L   + D  
Sbjct: 340 LDLTKVEANKLELARTPFNLKKELGILAAVVLPEAEGKGLEFSLEIAPDVPL-LLMGDAL 398

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNR 741
           R+ Q+   + +NA+ F+ +GS  +     D+ +      F V++ G  IPE     +F+ 
Sbjct: 399 RVRQVLLNLCNNAVKFTDEGSVSLRVRVVDSTNTRVRLEFVVRDCGIGIPESEIGRIFSP 458

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F+       RR  G GLGL+I +  + L GG +++ S
Sbjct: 459 FMQVDESATRRFGGTGLGLAISKRLVELMGGTLTVGS 495


>gi|315186291|gb|EFU20052.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 466

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 170/387 (43%), Gaps = 47/387 (12%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL--SNP-AFRSL 466
           G T    ++LT +  L   Y+T+       + H+ EG+ V   DGR+++  +NP A   L
Sbjct: 119 GQTHTRLQDLTAESHL---YHTV-------LTHMEEGIVVT--DGRLRITYANPRALEIL 166

Query: 467 WKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
               E+RL P    +R+ +     +   S G  L   + T     R              
Sbjct: 167 PLPPEHRLKPLPQFLRSTSLLEHIHRTLSSGIPLTHTLTTPPPSSR-------------T 213

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +   +IPLP +      +  +D  R ER            ++I+  FV  VS+EL++P+T
Sbjct: 214 IRLHLIPLPPSPAERLLLVASDITRLERL-----------EQIRRDFVSSVSHELKTPIT 262

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G+ + LK        + +++++E   + +  L  ++ D+L L+ ++     +     
Sbjct: 263 TVLGYLETLKDLPPDD-EATRTRFLETALSHTHRLHQIIEDLLLLSRIEQAEAPVPLERA 321

Query: 646 VLNDLLNEVKQSI-ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L  L+    + +  T+   + + ++   D  L     +   ++Q    ++ NA+  +  
Sbjct: 322 PLAPLIRRAMELLRQTRGETHPLTLEGPEDLALP---LNPGLMVQALYNLIHNAVTHTPP 378

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRG-VGLGLSIVE 762
           G+ V+++        +  V++ G  IP +    +F RF   +A R +  G  GLGLSIV+
Sbjct: 379 GTPVVVRWRGTGSSVLIQVEDRGPGIPPEALPRIFERFYRVDASRARSTGGTGLGLSIVK 438

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             +  H G VS++S+    TT   R+P
Sbjct: 439 HIVQAHRGEVSVASTPGEGTTFTIRLP 465


>gi|91778396|ref|YP_553604.1| periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691056|gb|ABE34254.1| Periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 1173

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 4/214 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ +V  +S+ELR+PL +I+G+  LL       L   +   V  I  S   LL LV
Sbjct: 715 ANRAKSRYVTGLSHELRTPLNSILGYAQLLLQGT-DELPPARRNAVATIYRSGEHLLALV 773

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           + +LD+A ++AG ++LN + I L D + ++   +  +  +  ++ +  + G++   V  D
Sbjct: 774 DGLLDVARIEAGKLQLNVTEISLPDFVAQLAAMLEPQATDKGLQFEFQTSGRMADVVRID 833

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +R+ QI   ++ NA+ F+S GS V ++A+       F + + G  +P    + +F  F 
Sbjct: 834 EKRVRQILINLIGNAIRFTSHGS-VKVRASYAWEAITFEITDTGPGMPASELERLFLPFE 892

Query: 744 SN-AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              A R    G GLGL+I      L GG++ + S
Sbjct: 893 RGAAAREHDHGAGLGLTICRLLTELMGGNLEVQS 926


>gi|78221421|ref|YP_383168.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78192676|gb|ABB30443.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 710

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 47/300 (15%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L G+L LL  S  E S      +Q  L     T+ +  ERA    N+ L + D +K++F+
Sbjct: 379 LMGSLRLLERSSHELSF-----SQHRLR----TNLMLVERA----NQELERIDRMKSNFL 425

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E R+PLT+II  T+ L +S    + S   + ++ I+     L  +V+DIL +A +
Sbjct: 426 GMISHEFRTPLTSIISGTEFLLSSPSFQIGSDARRVLDMINQGGERLSEIVSDILKVAKL 485

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +A    +  ST+ ++ +  EV +++     E ++ I      +L     DR+    IF++
Sbjct: 486 EANSTPVTRSTLHISQVFEEVLEALEPLRAERDLTISFADLERLPHCNGDRECFKDIFTE 545

Query: 694 ILSNAMDFSSKGSTVILKAA---RD----NGDFI------------------FSVKNNGS 728
           +L N++ F+  G T+++ A    RD     GD +                    V+++G 
Sbjct: 546 LLENSIKFTPDGGTIMVDARIVDRDRLSPRGDILNRFNSRFLAQSGGGCYLEVEVRDSGI 605

Query: 729 SIPEDMCKSVFNRFV---------SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            +  D    +F++F          S  ++ Q +G GLGL+IV+  +  HGG V + S  E
Sbjct: 606 GVSHDEQVKIFDKFYEVGDIRHHSSGKNKFQGKGTGLGLAIVKGMVEAHGGMVWVESPGE 665


>gi|302061857|ref|ZP_07253398.1| PAS [Pseudomonas syringae pv. tomato K40]
 gi|302132156|ref|ZP_07258146.1| PAS [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 1189

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 12/253 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           +++++D  +    L    E    A   K++F+  +S+E+R+P+  +IG  +L LK +  G
Sbjct: 673 WIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQG 732

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+      +E   +S+  LL+L+ DILD+A +++G + LN     L  L+  V +    
Sbjct: 733 ELDRSA---IEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDG 789

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
              + ++ + +  D ++ + V  D  R  QI S ++SNA+ F+  G   I   A DN D 
Sbjct: 790 LARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMGRVKIALQAVDNPDP 849

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHV 772
                  +V+++G  I  +  K +F  F    + GQ  R G GLGL I  S   + GG++
Sbjct: 850 QLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNL 909

Query: 773 SISSSDEGVTTIN 785
           S+ S     T I+
Sbjct: 910 SLDSEPGNGTRIS 922


>gi|300362619|ref|ZP_07058795.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
 gi|300353610|gb|EFJ69482.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
          Length = 616

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 116/236 (49%), Gaps = 10/236 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L        N    Q++  I   +  ++ 
Sbjct: 368 QKNEREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIA-PQFLHVIQDETERMIR 426

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-------QSIATKMHENNIRIKVISDG 675
           ++ND+L L+ +D G+ +++   + LND +N V        +S + KMH+    IK     
Sbjct: 427 MINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKREFPH 486

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  +++Q+   I++NA+ +S  G  + ++  +     I S+ + G  IP    
Sbjct: 487 QALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLGIPRKDL 546

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A   ++ G GLGL+I +  +  H G +   S++   +T    +P
Sbjct: 547 NKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISLP 602


>gi|283520942|gb|ADB25213.1| ethylene response 1 [Citrus sinensis]
 gi|283520950|gb|ADB25217.1| ethylene response 1 [Citrus hybrid cultivar]
          Length = 740

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L ++N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  + V D +RL+Q    ++ NA+ F+ +G+  I         
Sbjct: 432 PIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSES 491

Query: 710 LKAARDNGDFIFSVKNN----------GSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+ +R    F   ++N+          GS I P+D+  ++F +F  N     R   G GL
Sbjct: 492 LRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDI-PNLFTKFAQNQAIALRNSSGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 551 GLAICKRFVNLMEGHIWIESEGLG 574


>gi|262384786|ref|ZP_06077918.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262293502|gb|EEY81438.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 571

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 115/216 (53%), Gaps = 1/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ +++G++N +Q    E I  SS  LL
Sbjct: 344 FKELDSAKTTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAESIKESSNRLL 403

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            + +++L +  V+AG ++LN       +L+    ++   +    N  I+V    K+    
Sbjct: 404 EITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLF 463

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +++  + + +LSNA+ ++ +   +I+ A +        V++ G  I     +S+F+R
Sbjct: 464 VDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQGHSVEIYVQDFGKGIDPRYHQSIFDR 523

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +       + +G GLGL+I + F+  HGG +S+ S+
Sbjct: 524 YF-RVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSA 558


>gi|212543487|ref|XP_002151898.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
 gi|210066805|gb|EEA20898.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
          Length = 1313

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 17/244 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           N+ DS++     T   EA  +A+  K+ F+ ++S+E+R+P+  IIG T L L T  L   
Sbjct: 722 NLRDSIQRN---TAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPY 778

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +    V  ++ S   LL +++DILD++ ++A  M +      +   +    +++A K 
Sbjct: 779 PREMLNVVHNLANS---LLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKA 835

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAAR 714
           +E  + +    D  +  +V  D  RL QI   ++ NA+ F+  G   +        + AR
Sbjct: 836 NEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSEREQCAR 895

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D   F FSV + G  I ED    +F+ F        RR  G GLGLSI +  +NL GG V
Sbjct: 896 DEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 955

Query: 773 SISS 776
            ++S
Sbjct: 956 WVTS 959


>gi|168043876|ref|XP_001774409.1| ETR7 ethylene receptor [Physcomitrella patens subsp. patens]
 gi|162674261|gb|EDQ60772.1| ETR7 ethylene receptor [Physcomitrella patens subsp. patens]
 gi|163644186|dbj|BAF95743.1| ethylene receptor homolog [Physcomitrella patens]
          Length = 763

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 138/287 (48%), Gaps = 53/287 (18%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 315 ESMRARSLLVEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETRL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   V+ I  SS +L  L+ND+LDL+ ++ G ++L      L  +  EV + +A
Sbjct: 375 ---TPEQRSMVDTILKSSNLLATLINDVLDLSRLEDGSLELETRVFNLPIVFKEVMKLVA 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
                  ++ ++  DG L  F V D +RL+Q    ++ NA+ F+ +GS  I +   RD  
Sbjct: 432 PITSVKKLKSELTLDGDLPEFVVGDEKRLMQTVLNVVGNAVKFTKEGSVTIHVILDRDRT 491

Query: 718 DF----------------IFSVKNNGSSIPEDMC------------------KSVFNRFV 743
           D+                  S +++  S+ E  C                   ++FN+F+
Sbjct: 492 DYQRSEPHSLREPLSQVESRSQRDHHLSLGEQHCYIRVEVVDTGVGLNPLDIPNLFNKFL 551

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV---TTIN 785
                  R   G GLGL+I   F++L GG + + S  EG+   TT+N
Sbjct: 552 QADSSPTRNYGGTGLGLAICRRFVSLMGGDIWVES--EGIGKGTTVN 596


>gi|138894502|ref|YP_001124955.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247897|ref|ZP_03146599.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. G11MC16]
 gi|134266015|gb|ABO66210.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212681|gb|EDY07438.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. G11MC16]
          Length = 738

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 181/427 (42%), Gaps = 44/427 (10%)

Query: 376 ENIFSVYKSSETHKD--TWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYN 430
           + IFS ++     +D  T+H+PNG+   +  T       G  + +F N++ +  +E +  
Sbjct: 331 KRIFSEFRRKGEIRDELTFHMPNGEDKQLEFTMKKGAIDGYHLTIFRNVSERRKIERELR 390

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +      DH  +G+ ++    RI  +NP     +   +  L   T +  +     R 
Sbjct: 391 ESEQKFRSIFDHAMDGILLWDEKHRIIDANPIACEFFSATKEALLGQTVMELVPERARRQ 450

Query: 491 YN------ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
            N      E  G    A+    F DE K      E + +  L+  +IP      M+ F +
Sbjct: 451 LNKLFVQCERAGE---ASGEVEFSDEGK------EKIVEFSLKKEVIP---GVGMMRFRD 498

Query: 545 VTDSVRAERALTEKNEALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VT+  R E  L      LRK+D +         +++E+R+P+T + GF  LL+    GS+
Sbjct: 499 VTE--RKEMELQ-----LRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQ----GSV 547

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
               S Y   I +    + +++ + L LA   A   K N    ++ D ++ +  S    M
Sbjct: 548 GGDYSMYFNVIMSELKRIESIITEFLVLAKPQAVQYKQNDICKIMQDTIDLI--SAQAMM 605

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           H  N++I    +  L     +  +L Q+F  IL NA++   KG  + ++ AR       S
Sbjct: 606 H--NVQIIADFERGLPPVYCEPNQLKQVFINILKNAIEVMPKGGDITVRIARTGRHVRIS 663

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + + G  IP+D  K +   F +     + RG GLGL +    I  H G + + S     T
Sbjct: 664 ITDQGCGIPKDKIKKLGEPFYTT----KERGTGLGLMVSYKIIEEHRGKIDVESEVGVGT 719

Query: 783 TINCRIP 789
           T +  +P
Sbjct: 720 TFHITLP 726


>gi|21241667|ref|NP_641249.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107031|gb|AAM35785.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 636

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+   S+ELR+PL  I+G+  +L+   +        +++ +I  +   LL L+
Sbjct: 272 ANRAKTEFLSRSSHELRTPLNAILGYAQVLE---MDLPEPGHRRHLRHILGAGRHLLGLI 328

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ++LD+A ++A  + L+   I +   ++E    IA    ++ I ++  S     +  AD 
Sbjct: 329 TELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKHGIALQPASIDGPWTVRADA 388

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QRL Q+   +LSNA+ F+  G  V + A  D      +V + G+ +     + +F  F  
Sbjct: 389 QRLRQVLLNLLSNAVKFNRTGGQVQVSAQADGEQVRITVADQGAGLTPAQIERLFTPFER 448

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             A R    G GLGL++ +  I   GG + + SS +G 
Sbjct: 449 LGAERSAVEGTGLGLALSKRLIEAMGGQIGVDSSSDGA 486


>gi|326799510|ref|YP_004317329.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
 gi|326550274|gb|ADZ78659.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
          Length = 677

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 8/229 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +  +++K+ F+   S+EL++PLT+I  +T LLK S   + +   + ++  +S     L N
Sbjct: 452 KAVEKMKDDFIGVASHELKTPLTSIKAYTQLLKKS---TTDDTPASFINKLSKQVDRLTN 508

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV  +LD + +  G + L    I LN+L+++  Q +     ++ +   +    K+   +A
Sbjct: 509 LVYLLLDTSNISGGHLMLQLGDIDLNELIDDCIQDLQPISIDHKL---IFHKEKIPHLIA 565

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+ Q+ + ++SNA+ +S +G  V +KA         SV++ G  I  +    +FNRF
Sbjct: 566 DKNRINQVLTNLISNAVKYSPEGGAVHIKATDMGYAVKVSVQDYGVGIAAEDQSKIFNRF 625

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +G     G+GLGL IV   +  H G + + S      T    IP
Sbjct: 626 FRVTSKGNDNISGIGLGLYIVSEIVKKHNGILGVESVPGQGATFFFEIP 674


>gi|294665141|ref|ZP_06730443.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605102|gb|EFF48451.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 767

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 10/238 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+ +Q  Y E I  + 
Sbjct: 391 KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDIEQRSYTESIRRAG 447

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R   +  G L
Sbjct: 448 AHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFS-LEIGLL 506

Query: 678 GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
           G   A  D  R+ QI   +L+NA+ F+ +G   + L          F V + G  I  + 
Sbjct: 507 GDITASGDCTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINVEQ 566

Query: 735 CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F RF   +  R   R  G GLGL+I +      GG + + S     T     +P
Sbjct: 567 KARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVELP 624


>gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1248

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 13/238 (5%)

Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R E    + N AL +ADE    K  F+ ++S+E+R+P+  +IG   LL  +   SL  +Q
Sbjct: 573 RMELTNKQLNIALARADEAAKAKGDFLANMSHEIRTPMNGVIGMAGLLLDT---SLTDEQ 629

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++ E I +S  +LL LVNDILD + ++AG ++L      L  +L++V  S+A   H   
Sbjct: 630 QRFAETIRSSGELLLLLVNDILDFSKIEAGKLELEIVDFDLVQILDDVMDSMAVGSHSKG 689

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIF 721
           + +   +D  +      D  RL QI S ++ NA+ F+ +G       I+     +    F
Sbjct: 690 LELLCATDPSVPYQLQGDPARLRQILSNLVGNAIKFTVQGQVSVRVSIVNEKESDCILKF 749

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           SV + G  I  D    +F +F        R+  G GLGL+I +  + + GG + + S+
Sbjct: 750 SVSDTGIGIQSDKQVLIFEQFNQVDASTTRKFGGTGLGLAISKRLVEMMGGTIGVESN 807


>gi|242786807|ref|XP_002480878.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218721025|gb|EED20444.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1309

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 17/244 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           N+ DS++     T   EA  +A+  K+ F+ ++S+E+R+P+  IIG T L L T  L   
Sbjct: 712 NLRDSIQRN---TAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPY 768

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +    V  ++ S   LL +++DILD++ ++A  M +      +   +    +++A K 
Sbjct: 769 PREMLNVVHNLANS---LLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKA 825

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAAR 714
           +E  + +    D  +  +V  D  RL QI   ++ NA+ F+  G   +        + AR
Sbjct: 826 NEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSEREQCAR 885

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D   F FSV + G  I ED    +F+ F        RR  G GLGLSI +  +NL GG V
Sbjct: 886 DEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 945

Query: 773 SISS 776
            ++S
Sbjct: 946 WVTS 949


>gi|23013889|ref|ZP_00053739.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 513

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 9/250 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + +  RAE  L +    L + +     F    +++L+ P+  ++ F+ LL+     +L S
Sbjct: 249 IHERTRAESDLQQVIAELSRTNAELERFAYVAAHDLQEPVRGLVSFSQLLERKYAENLGS 308

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           + + Y+ +I   +  + NLV D+L+ +   AG   LN   +   +L++ V QS+   + +
Sbjct: 309 EGNDYLRFIINEALRMSNLVRDLLEYSR--AGGTHLNLGDVDCRELVHTVVQSLRPNVEQ 366

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFS 722
            N    V+  G L   +AD+ +L Q+F  +L NA+ +S +G++  + + A RD   + F 
Sbjct: 367 KN---AVLEIGDLPGLIADQGQLYQVFHNLLGNALKYSDEGNSPRIRINAERDGNSWRFE 423

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V +NG  I       VF  F    H G    G G+GL+I +  +  HGG + ++S+    
Sbjct: 424 VADNGIGIEAQYHDYVFEVF-RRLHTGTAYSGTGIGLAICKRIVESHGGRMWLTSTPGQG 482

Query: 782 TTINCRIPSK 791
           +T    IP +
Sbjct: 483 STFFFTIPDQ 492


>gi|255026540|ref|ZP_05298526.1| sensor protein ResE [Listeria monocytogenes FSL J2-003]
          Length = 350

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +   
Sbjct: 89  AILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-ID 147

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  +
Sbjct: 148 GVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISN 207

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAAR 714
                 EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   
Sbjct: 208 FDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTI 267

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHG 769
           D    + + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H 
Sbjct: 268 DEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHN 327

Query: 770 GHVSISS 776
           G +S+ S
Sbjct: 328 GKISVES 334


>gi|228906741|ref|ZP_04070613.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
 gi|228852918|gb|EEM97700.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
          Length = 896

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 124/251 (49%), Gaps = 15/251 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 541

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  S
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF------------IF 721
           D     F  D +R+ QI   +LSNA  F+ KGS  +     +  +               
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFNPIETNNLSHDMQSISKEWITI 661

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG +++ S+  
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNLG 721

Query: 780 GVTTINCRIPS 790
             +T    IP+
Sbjct: 722 EGSTFTVYIPN 732


>gi|262404177|ref|ZP_06080732.1| sensor histidine kinase [Vibrio sp. RC586]
 gi|262349209|gb|EEY98347.1| sensor histidine kinase [Vibrio sp. RC586]
          Length = 681

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 129/256 (50%), Gaps = 19/256 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T ++  E+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 280 TFNQKTINLEVEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 332

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS+  L  ++  +K   ++
Sbjct: 333 --TAKQRQHLTSLYESGEHMMTLLNEILDYSKIEQGKFELDYSSFPLRSIIGSIKSIYSS 390

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714
              E  ++  +   I+D +   +  D+ RL QI   +LSNA+ F+ +G   I    +A +
Sbjct: 391 LCFEKGLKFHLNSEITDTRW--YYGDKARLRQIIFNLLSNAVKFTERGFVTIGLAEEATQ 448

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +    I  V+++G  I ++    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 449 EGHYLIIKVQDSGIGIAKEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAALMNGTV 508

Query: 773 SISSSDEGVTTINCRI 788
           S+ S     T    R+
Sbjct: 509 SVQSEVGRGTCFEVRV 524


>gi|228996673|ref|ZP_04156310.1| hypothetical protein bmyco0003_12590 [Bacillus mycoides Rock3-17]
 gi|228762992|gb|EEM11902.1| hypothetical protein bmyco0003_12590 [Bacillus mycoides Rock3-17]
          Length = 604

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 130/246 (52%), Gaps = 13/246 (5%)

Query: 543 VNVTDSVR----AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           VN+ D +     A   L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K   
Sbjct: 352 VNLKDRIDRLNIANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK--- 408

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              ++   + Y + I   +  +  L+ ++L+LA +++G  KL  +T  L +L+ +V   +
Sbjct: 409 -DGVSKDNTYYTDVILEETENMNRLIVEMLELAKLESGTYKLEMNTFSLGELVQQVYTKL 467

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              M E  +++++  D     +V A+R R+ Q+   +LSNA+ ++  G  + ++   +  
Sbjct: 468 LFSMEEKQLQVEI--DANPSIYVEANRNRIEQVVVNLLSNAIRYTPDGKEIRIRVIENEE 525

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
                ++N G+ IPE+  + +++RF   +A R +   G GLGLSIV++ + LH     + 
Sbjct: 526 KVKVEIENTGNPIPEESLQKIWDRFYRLDASRSRHTGGTGLGLSIVKNILELHHAKYGVY 585

Query: 776 SSDEGV 781
           ++++ V
Sbjct: 586 NTNDSV 591


>gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1029

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 10/219 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K+ F+  +S+E+R+P+  +IG  D+L  S+L   +++Q + V  +  S+  LL L+
Sbjct: 500 ASRAKSEFLTTMSHEIRTPMNGVIGLLDVLSHSQL---STEQVEMVGIMRESAETLLRLI 556

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           +DILD + +++G ++L+     + DL+  V   + T  +  ++R+    D  + + V  D
Sbjct: 557 DDILDFSRIESGNLELDVGPASIPDLIARVVGILQTVANRKSVRLSTRIDPDVPAVVRTD 616

Query: 684 RQRLLQIFSKILSNAMDFSS----KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL QI   ++ NA+ FSS     G   I       G   F V +NG  I  +  + +F
Sbjct: 617 ALRLQQILGNLVGNAVKFSSGLDRPGRVEIRVETAGAGRIRFMVTDNGIGIAPEAIEKIF 676

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + F        RR  G GLGLSI    + +  G + ++S
Sbjct: 677 DPFSQAESSTTRRFGGSGLGLSICTRLVRMMKGRMEVNS 715


>gi|224059042|ref|XP_002299688.1| ethylene receptor 3 [Populus trichocarpa]
 gi|222846946|gb|EEE84493.1| ethylene receptor 3 [Populus trichocarpa]
          Length = 737

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  +I  + LL+ ++L
Sbjct: 315 ESMRARDLLMEQNVALDHARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETEL 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  +  L+ +  EV   I 
Sbjct: 375 ---TPEQRLMVETILRSSNLLATLINDVLDLSRLEDGSLRLDLGSFNLHAVFKEVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  + + D +RL+Q    ++ NA+ FS +GS  I         
Sbjct: 432 PIASVKKLPVTLNLAPDLPEYAIGDEKRLMQTILNVVGNAVKFSKQGSISITAFVAKSES 491

Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+ +R         DN  ++   VK+ G  I P D+ K +F +F        +   G GL
Sbjct: 492 LRDSRAPDFFPVPSDNHFYLRVQVKDAGQGINPPDIPK-LFTKFAHAQTLATKNSSGSGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 551 GLAICKRFVNLMEGHIWIESEGPG 574


>gi|221641063|ref|YP_002527325.1| Multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           KD131]
 gi|221161844|gb|ACM02824.1| Multi-sensor hybrid histidine kinase precursor [Rhodobacter
           sphaeroides KD131]
          Length = 825

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 15/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++   RAER LTE  +     ++ K  F+  +S+E+R+PL  + G  +LL  +    L+
Sbjct: 312 DISARRRAERELTEARDRALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTP---LD 368

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-- 661
            +Q + V  + AS+ ILL+ VN +LD+A  +A   + + + +V  DL   ++  IA +  
Sbjct: 369 PRQRELVSVLRASAEILLDHVNSVLDIARSEA---RPSVAEMVDFDLDRLIEDCIANQSG 425

Query: 662 ---MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +  N I  + ++ G +G    + QRL Q+   +L+NA+ F+  G  +I+++     D
Sbjct: 426 FAAVVGNRIDHRPLT-GPVGILNGEPQRLRQVLLNLLNNAVKFTRNGR-IIVESEVQGAD 483

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V + G  I  +  + VF+ FV+     +RR  G GLGL I      + GG +++ S
Sbjct: 484 VEIRVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGLGLGIARRLARIMGGDLTVQS 543

Query: 777 SDEGVTTINCRIP 789
           +    +    R+P
Sbjct: 544 TPGRGSRFTLRLP 556


>gi|242786803|ref|XP_002480877.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218721024|gb|EED20443.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1310

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 17/244 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           N+ DS++     T   EA  +A+  K+ F+ ++S+E+R+P+  IIG T L L T  L   
Sbjct: 712 NLRDSIQRN---TAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPY 768

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +    V  ++ S   LL +++DILD++ ++A  M +      +   +    +++A K 
Sbjct: 769 PREMLNVVHNLANS---LLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKA 825

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAAR 714
           +E  + +    D  +  +V  D  RL QI   ++ NA+ F+  G   +        + AR
Sbjct: 826 NEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSEREQCAR 885

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D   F FSV + G  I ED    +F+ F        RR  G GLGLSI +  +NL GG V
Sbjct: 886 DEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 945

Query: 773 SISS 776
            ++S
Sbjct: 946 WVTS 949


>gi|116511253|ref|YP_808469.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106907|gb|ABJ72047.1| PAS/PAC sensor signal transduction histidine kinase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 475

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 133/249 (53%), Gaps = 22/249 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEY 612
           +TE+++A R+    +  FV +VS+ELR+PLT++  + + L+    G+++ K+  S ++  
Sbjct: 218 MTEQDKAERE----RRLFVSNVSHELRTPLTSVKAYLEALED---GAIDDKETASSFIGV 270

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHE---- 664
               +  ++ +++D+L L+ +D   + LN   I     L+  +N + Q + T+ ++    
Sbjct: 271 SLTETNRMIRMISDLLTLSRMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISS 330

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           N   ++  SD  +   + D  ++ Q+   I+ NA+ +S KG T+ +       D + S+K
Sbjct: 331 NFTLVRKYSDKPIWVEI-DTDKIAQVIDNIIGNAIKYSPKGGTITISIETRERDVLISIK 389

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IP+     +F+RF  V NA R  +  G GLGLSIV   + +HGG +  SS  EG 
Sbjct: 390 DEGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGK 449

Query: 782 -TTINCRIP 789
            TT +  +P
Sbjct: 450 GTTFSFTLP 458


>gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 927

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 113/217 (52%), Gaps = 10/217 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  I+G T+LL  ++L   + +Q  ++    ++   LL ++NDIL
Sbjct: 410 KSEFLATMSHEIRTPMNAILGMTELLGETQL---SIEQRGFLSVCRSAGENLLQIINDIL 466

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRL 687
           D++ V++G ++L +    L  ++ +  + I  + HE  +   +  D  +  + + D  R+
Sbjct: 467 DISKVESGGLELQHVPFNLRRIVYDAGEVIRFRSHEKGLHQLIFIDESVPEWLLGDPARI 526

Query: 688 LQIFSKILSNAMDFSSKG--STVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI    L NA+ F+  G  +TV+   A      + +F V + G  IPE     VF+ F 
Sbjct: 527 RQILINFLGNAIKFTEAGTIATVVSTTAGKGSQVEIVFRVIDTGIGIPESKQSVVFDAFK 586

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
                 QRR  G GLGL+I +   +L GG + + S +
Sbjct: 587 QLDSSTQRRYGGTGLGLTISKKLADLMGGQLGLKSQE 623


>gi|294624242|ref|ZP_06702954.1| histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292601458|gb|EFF45483.1| histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 578

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 11/228 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +AL   D  ++ F+  +S+ELR+PL  +I    L++T ++    ++Q + ++ ++ ++T 
Sbjct: 198 QALASRDA-QSRFISTMSHELRTPLNAVINCAQLIETEQM---PAQQRELLQSVTVNATA 253

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L + VN++LD+A++D G ++L+   + L D++  VK   AT      + + V  D     
Sbjct: 254 LRHRVNEVLDVASIDGGRLQLHRKPLNLLDVVTTVKAVCATAASSKGVTLDVRVDSPQAP 313

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDM 734
            V  D  R+ Q+ S ++ NA+ F+  G TV L       ++      +V + G  +P+D 
Sbjct: 314 HVMGDEGRIEQVISNLVINAIKFTPAGGTVDLLIDATQVQERWSIAVTVTDTGIGVPDDQ 373

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              +F  F  +S        GVGLGL I  S  +  GG +++S +  G
Sbjct: 374 KAYIFTPFTQLSTGFSRVEGGVGLGLYIALSVSDAMGGSLTVSDNPAG 421


>gi|229819336|ref|YP_002880862.1| histidine kinase [Beutenbergia cavernae DSM 12333]
 gi|229565249|gb|ACQ79100.1| histidine kinase [Beutenbergia cavernae DSM 12333]
          Length = 467

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 557 EKNEALRKADEIK-NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           E + A R A E +   FV   S+ELR+PL  + G+ +L +    G  +    Q +E +  
Sbjct: 225 EASFAQRTASERRMQRFVSDASHELRTPLAAMRGYAELYRLG--GIPDDDVPQVMERLER 282

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SD 674
            S  + +LVND+L LA +D G   L    + L  L  +  + +        +R++   +D
Sbjct: 283 ESVRMGSLVNDLLALARLDEG-RGLRLGQVDLAQLAADAAEDLRAIDPARTVRVEAPDAD 341

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPED 733
           G   +   D  +L Q+   ++ N   ++  GS V L  AR   D  +  V ++G  I  D
Sbjct: 342 GDGWAVEGDADQLRQVMLNLIGNVASYTPAGSPVELVLARPTADAVVLEVVDHGPGIAPD 401

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               VF+RF  V  +      G GLGL+IV + +  HGG VS+  + +G TT+   +P +
Sbjct: 402 DAARVFDRFYRVETSRSRSAGGSGLGLAIVAAIVGAHGGAVSVVPTPDGGTTVRIELPVR 461


>gi|228939021|ref|ZP_04101620.1| hypothetical protein bthur0008_16830 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971902|ref|ZP_04132523.1| hypothetical protein bthur0003_16810 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978509|ref|ZP_04138886.1| hypothetical protein bthur0002_17150 [Bacillus thuringiensis Bt407]
 gi|228781526|gb|EEM29727.1| hypothetical protein bthur0002_17150 [Bacillus thuringiensis Bt407]
 gi|228787992|gb|EEM35950.1| hypothetical protein bthur0003_16810 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820640|gb|EEM66666.1| hypothetical protein bthur0008_16830 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939522|gb|AEA15418.1| sensor protein vanS [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 291

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 128/245 (52%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +  QY
Sbjct: 45  RMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEECEQY 103

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+   + +  L+ ++      ++ + N+  
Sbjct: 104 VSILKRKSYELKNQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIDFVPQLDDANMSF 163

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + SD  L   V D   ++++F  ++ N++ +   G  + +       +    +KN G  
Sbjct: 164 YIKSDEVLHVEV-DVTLIVRLFENVIGNSIMYGRDGKEIAIGIFNKTMNVEVEIKNFGQC 222

Query: 730 IPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           IP++    VF +F       ++H G   G G+GL+I +S   LH G +++ S+D+  T  
Sbjct: 223 IPKEDLPYVFEKFYRSEKSRSSHTG---GKGMGLAISKSIAELHQGDITVRSNDKE-TVF 278

Query: 785 NCRIP 789
             ++P
Sbjct: 279 TVKLP 283


>gi|229141590|ref|ZP_04270122.1| hypothetical protein bcere0013_46820 [Bacillus cereus BDRD-ST26]
 gi|228641870|gb|EEK98169.1| hypothetical protein bcere0013_46820 [Bacillus cereus BDRD-ST26]
          Length = 365

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 129/245 (52%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  + +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 121 ASEKLKEAVERGDFAESSKDQLIVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 180

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + ++++  
Sbjct: 181 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLEA 238

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DNG+ +  V N G S
Sbjct: 239 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNGEVVVQVMNYGDS 297

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F + +  R + R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 298 IPEEDLPYLFDMFYTGDKSRSENRGGTGLGLFIAKNIVEQHNGTIS-AESNIVRTMFEVR 356

Query: 788 IPSKE 792
           +P  E
Sbjct: 357 LPKDE 361


>gi|302547112|ref|ZP_07299454.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302464730|gb|EFL27823.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1304

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 15/248 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L E+   L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y
Sbjct: 856  QARQELEERARQLTLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPARNLTPKQVEY 915

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L++DILDL+ V+AG M +    + L  LL+ V+ +      +  +  
Sbjct: 916  AGVIHSAGSDLLQLIDDILDLSKVEAGKMDVEPERVPLQRLLDYVEATFRPMTAQKGLDF 975

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
            ++ +S       V D  RL Q+   +LSNA+ F+  G+  +  A     D          
Sbjct: 976  RISVSPAVPAELVTDDSRLRQVLRNLLSNAVKFTESGAVELRIAPAAESDLPREVRGQGP 1035

Query: 719  -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F V + G  I E   +++F  F        R+  G GLGLSI     +L GG V  +
Sbjct: 1036 ALAFRVVDTGIGIAEQQLEAIFAAFQQADGTTSRKYGGTGLGLSISREIAHLLGGAVHAA 1095

Query: 776  SS-DEGVT 782
            S+  EG T
Sbjct: 1096 STLGEGST 1103


>gi|256379099|ref|YP_003102759.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
 gi|255923402|gb|ACU38913.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
          Length = 1479

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 4/238 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L ++   L  A + K+ F+ ++S+ELR+PL +++    LL  +  G+LN KQ ++   I 
Sbjct: 1074 LEDRARQLSSASKYKSEFMANMSHELRTPLNSLLILAKLLTDNLDGNLNPKQVEFARTIH 1133

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S T LL L++DILDL  V++G M++    + ++D++  V+        E  +   V   
Sbjct: 1134 SSGTDLLQLIDDILDLTKVESGHMQVQTDPVRVSDVVGYVESLTLPLAAEKGLGFDVSVQ 1193

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              + S +  D  RL QI   +LSNA+ F+ +G  + L+         F V++ G  IP +
Sbjct: 1194 PDVPSTLHTDEHRLQQILRNLLSNAVKFTHEGE-IRLRIRTAGPSVAFDVQDTGIGIPAE 1252

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  F        R+  G GLGLSI      L  G + + S     +T    +P
Sbjct: 1253 KLSVIFEAFQQADGTTSRKYGGTGLGLSISRELSALLEGRLDVRSEPGFGSTFTLYLP 1310


>gi|254523393|ref|ZP_05135448.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720984|gb|EED39509.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 377

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 144/291 (49%), Gaps = 18/291 (6%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE-KNEA 561
           +  S DD  ++ +G  E  +   L   + P    Q +L+ VNV   +  +R L + +NEA
Sbjct: 94  LTASPDDPVRAFKG-YETGAVDFLHKPVAP----QVILSKVNVFIELYQQRQLLKARNEA 148

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +A ++  +    ++++LR+PL+ I+   D L   +L   N+   Q ++++ AS+  + 
Sbjct: 149 LERALKLNETMAAVLTHDLRTPLSAILLCADKLAL-ELPEDNAGAQQTLQHLEASTLRMA 207

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +V  +LD + + +G ++L  S   L ++ + V     +      IR   I D +L    
Sbjct: 208 RMVEQLLDFSRIRSGGLRLETSACDLAEVTHAVIAEAGSAHGHERIRFDAIGDTRLQG-- 265

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D  RL QI + ++ NA+   + GS  +++   RD    +  V N G  I + +   +F 
Sbjct: 266 -DMDRLGQIAANLVGNAL---THGSEALVQLDGRDARTVVMRVSNTGH-IDDALLPRLFE 320

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F ++ H  Q +G+GLGL IV+ F+  HGG +  + ++ G      ++P +
Sbjct: 321 PFKASFH--QSKGLGLGLYIVDQFVRAHGGRIG-ARNEAGQVVFEAKLPRR 368


>gi|153832942|ref|ZP_01985609.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148870865|gb|EDL69764.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 878

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 127/245 (51%), Gaps = 18/245 (7%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    + +  E+   A+  K+ F+  +S+E+R+PL  IIG T++L  S    L+  Q + 
Sbjct: 360 RQTEEILQTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQS---DLSDHQKEV 416

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENN 666
           +  I  SS  LL L+NDILDL+ +++G ++L   +++  D+   V QS+    +K     
Sbjct: 417 LSDIDTSSHTLLTLLNDILDLSKIESGHLQL---SLIETDIREVVYQSVILFQSKATSKR 473

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI- 720
           + + +  D ++ + +  D  R+ QI   ++SNA+ F+ +GS  I     ++      F+ 
Sbjct: 474 LELNINLDERIPARIKVDDHRIKQIIMNLVSNAVKFTEQGSINIDVNYQESTTQKSVFLT 533

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F V + G  I +D   ++F  F        R+  G GLGL+I    + + GG ++ SSS 
Sbjct: 534 FRVSDTGVGIEQDKLDTIFEPFTQEDEGISRQFGGTGLGLAICRQLVAMMGGQLTASSS- 592

Query: 779 EGVTT 783
           +G+ T
Sbjct: 593 KGIGT 597


>gi|117926678|ref|YP_867295.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610434|gb|ABK45889.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 957

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  +IG T+LL  +    L+ +Q +YV  + +S T LL+++N IL
Sbjct: 586 KSEFLAAMSHEIRTPMNTVIGMTELLLET---PLSEEQQRYVRSLRSSGTALLDVINAIL 642

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           DL  +++G ++L      L++L+ E  + +     +  + + + ++       V D  RL
Sbjct: 643 DLTRIESGRLELTEERYDLHELMRETCEVMGYAAAKKKLEMVLEMNPNTPNYLVGDAPRL 702

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            QI   ++ NA+ F+  G  V ++   D         V+++G  IP++   ++F+ F   
Sbjct: 703 RQILINLVGNAIKFTEVGQ-VCVRVWLDEAVERLRIEVEDSGIGIPKEHINTIFDMFAQA 761

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                RR  G GLGL+I +    L GG +++ S  +  +     +P +
Sbjct: 762 DSSMARRFGGSGLGLTISQRLAQLMGGRLAVQSQVQKGSCFTLSMPCQ 809


>gi|303240382|ref|ZP_07326900.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592109|gb|EFL61839.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 488

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 123/236 (52%), Gaps = 4/236 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+E  E + K ++++  FV +VS+E R+PLT I G  + L    +      +  Y   +S
Sbjct: 249 LSEATEEINKLEQVRRDFVANVSHEFRTPLTVIRGSLEALSDGTIEDTEDIKRFYQRMLS 308

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   L  LV+D+L+L+ + +G + ++   + +  LL+++ +S+ T   +  I+I  I+D
Sbjct: 309 ETRG-LERLVSDLLELSRLQSGKITIHKEHVHIPSLLSDIIKSMQTIADKKEIQIDFITD 367

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPED 733
             +   + D  RL Q+F   + NA+ +S   + V +    +D+ + +  +++ G  I  +
Sbjct: 368 DNVPPVLGDYDRLRQLFVIFIDNAIKYSPDKTIVTVTTHVKDSLEIL--IQDQGYGIAVE 425

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               V++RF       +  G GLGL+I +  I L+GG V + S+    TTI  ++P
Sbjct: 426 ELPYVWDRFYKTDKSRKSSGTGLGLAIAKHLIKLNGGSVELKSAAGKGTTIEIQLP 481


>gi|239909089|ref|YP_002955831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798956|dbj|BAH77945.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 975

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 128/256 (50%), Gaps = 12/256 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+++     E AL    E+   A++ K+ F+  +S+E+R+P+  I+G  D+L+ ++   
Sbjct: 553 LVDISGRKTMEEALRLAKESAEAANKAKSRFLSTMSHEIRTPMNTILGMVDVLRGTE--- 609

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q +++  +  +   L+ L+ DIL+L+ +++G+++L  +     +L  +V   ++ +
Sbjct: 610 LSGRQQEFLRTLEVAGESLMALLTDILELSKIESGVLELAEAAYDPLELAGQVVALLSPQ 669

Query: 662 MHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARD 715
                + ++ +  GK      V D  R+ QI   ++ NA+ F++ G       +L A   
Sbjct: 670 AQAKGLTLR-LEAGKDAPRQAVGDPDRIRQILINLVGNAIKFTAAGEVALKLSLLPARLS 728

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             + +F+V + G  IP +  +++F  F  V ++      G GLGL+I    ++   G + 
Sbjct: 729 REELLFAVSDTGIGIPPEKREAIFKPFTQVDSSTTRAYGGTGLGLAICALLVDGMNGRLW 788

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +   C +P
Sbjct: 789 LESEPGAGSVFYCALP 804


>gi|226227266|ref|YP_002761372.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226090457|dbj|BAH38902.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 745

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  IIGFT+LL  S    L + Q  ++  +  SS  LL L+NDIL
Sbjct: 157 KSTFLANMSHEIRTPMNAIIGFTELLLQSD---LTTTQRNHLSTVRQSSRSLLGLINDIL 213

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D   ++ G M L      L  +  +++ S+        + +       L   F+ D  R+
Sbjct: 214 DTTRLEKGGMVLEMIDFSLKGISMQIESSLRLSAQARGLSLTTSYPANLPEYFLGDPLRI 273

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           LQ+ + ++ NA+ F+ +G  V L  + ++   I  V++ G  + ++   S+F  F     
Sbjct: 274 LQVLTNLVGNAIKFTERGG-VELSFSSEDEQVIIMVRDTGIGMTQEQVASIFTPFTQADA 332

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              RR  G GLG +I    + L  G + + S+    +    R+P
Sbjct: 333 SISRRFGGTGLGTTISRQLVELMDGQIEVESALGQGSCFRVRLP 376


>gi|190565563|ref|ZP_03018483.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|190563590|gb|EDV17555.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
          Length = 511

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 281 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQAIYDKVTRLNA 339

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 340 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 399

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A  +N      + N G  IP      +F RF
Sbjct: 400 DGDKLVRVFENLIINAIAYGNDGDYIDITAYENNNMIAIDITNYGQPIPSTDLPHIFERF 459

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 460 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 501


>gi|167773002|ref|ZP_02445055.1| hypothetical protein ANACOL_04390 [Anaerotruncus colihominis DSM
           17241]
 gi|167664935|gb|EDS09065.1| hypothetical protein ANACOL_04390 [Anaerotruncus colihominis DSM
           17241]
          Length = 432

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 13/244 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + RA R +    +  R+AD     FV   S+ELRSPL  I      ++ +       + +
Sbjct: 196 TARAIRPIAVNRQ--RQAD-----FVSAASHELRSPLAVIQASVSAVREAP----PERAA 244

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + + ++     +  LV+D+L LA+ D+G   +      L  LL    +       +  I
Sbjct: 245 HFFDSVTNECARMSRLVDDMLTLASADSGSWSIIREETDLETLLLNTAEWHEPAAAQKQI 304

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           RI V + D  L     DRQR+ Q  + +L NA+ ++  G  + L AA+  G     V +N
Sbjct: 305 RIHVSLPDDPLPKCYCDRQRIGQAMAILLDNAIAYTPPGGEIKLSAAKRRGGIALIVSDN 364

Query: 727 GSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  IP  + + VF RF   +  R ++   GLGLSI     +LH G +++  +  G  T  
Sbjct: 365 GPGIPSALRERVFERFYRVDTSRSKKEHYGLGLSIAREIASLHCGKLTLRDTPGGGATFI 424

Query: 786 CRIP 789
             +P
Sbjct: 425 LYLP 428


>gi|157363850|ref|YP_001470617.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
 gi|157314454|gb|ABV33553.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
          Length = 421

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 123/233 (52%), Gaps = 15/233 (6%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +E++  FV +VS+ELR+PLT+I G+ + LL    + +    + ++++ I   S  +  L+
Sbjct: 185 NEMRREFVSNVSHELRTPLTSIHGYAETLLNDPDMDA--ETRDRFLKIIENESARMSRLI 242

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRIKVISDGKLGSFVAD 683
           ND+LDL  +++G  + ++  I   DL + VK  ++ T+    +  +KV  D +  +   D
Sbjct: 243 NDLLDLERLESGEARFDFQKI---DLCSVVKYVVSITEPLSIDYDVKVEYDCEEVTIDGD 299

Query: 684 RQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           + RL+Q+   +  NA+ ++S   +    V +   ++    +  V + G  +P D    +F
Sbjct: 300 QDRLIQMLLNLADNAVKYTSLKESGEKKVSISVKKEGSQAVIRVSDTGPGMPRDALNRIF 359

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF     +G+ R   G GLGLSIV++ ++ H G + + S     T+   ++P
Sbjct: 360 DRFY-RVDKGRSRKMGGSGLGLSIVKTIVDRHNGQIFVESEPGAGTSFTVKLP 411


>gi|307307210|ref|ZP_07586947.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|306910265|gb|EFN40697.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1629

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 125/241 (51%), Gaps = 10/241 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++T+  + E  L E       A+  K++F+ ++S+E+R+P+  ++G   L++ +   S+
Sbjct: 874  LDITEQRQLEETLREAKHEADAANAAKSAFLANMSHEIRTPMNAVLGMLQLMQHT---SM 930

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +Q  YV     ++  LL L+NDILD + +DAG + L+     +  L+ ++   ++   
Sbjct: 931  SVQQQDYVSKTQTAAKSLLGLLNDILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNH 990

Query: 663  HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI 720
               N+ +    D  L ++ +AD+ RL QI   +  NA+ F+  G  TV ++  R   + +
Sbjct: 991  GNKNVEVMFDLDPALPAWLLADQLRLQQILVNLAGNALKFTRHGQVTVAMECLRHEVNTV 1050

Query: 721  ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                S+ + G  I E+  + +F  F        RR  G GLGL+I +  + L GG ++++
Sbjct: 1051 TVQISISDTGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVT 1110

Query: 776  S 776
            S
Sbjct: 1111 S 1111


>gi|219848945|ref|YP_002463378.1| AraC family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543204|gb|ACL24942.1| two component transcriptional regulator, AraC family [Chloroflexus
           aggregans DSM 9485]
          Length = 1201

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 16/240 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLG-SLN 603
           ++ R  RA +E      +A+++K+ F+  VS+EL++PL  I+G + LL  + ++ G  L 
Sbjct: 574 NTARLYRAASEGQRLAEEANQLKSRFLSMVSHELQTPLNLIVGMSGLLLREIAQSGDPLP 633

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S     +  I AS+  L  L++D+LDLA+ DAG ++LN   + L +++  V  +   +M 
Sbjct: 634 SSIRDDLRRIYASARHLGRLISDVLDLASSDAGQLRLNCEVVDLGEVMRVVADA-GRQMA 692

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +       S    G +V  DR RL QI   ++ NA+ F+++G  V L    +      +
Sbjct: 693 ADKQLTWYDSIPAEGPWVWGDRTRLQQIGLNLVVNAIKFTARGR-VGLIVTPETDAVTVT 751

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISS 776
           V++ G  +P      +F  F     R +R       G+GLGL+I +  + +HGG + + S
Sbjct: 752 VRDTGIGLPPTEQAHIFEEF----QRSERSVSQGYGGIGLGLAICKRLVAMHGGEIGVRS 807


>gi|115523225|ref|YP_780136.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115517172|gb|ABJ05156.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 1039

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 169/396 (42%), Gaps = 50/396 (12%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-------------- 483
           + I+ +S+G  ++    R  L+N  F+ ++    +R+ PG    ++              
Sbjct: 483 DAIESMSQGFVLYDKHDRFVLANSHFKEMFPELADRMKPGMRYEDVLCAVHQSDLVDAPK 542

Query: 484 -AATCSRYYNESDGWDLFA--AIITSFD--------DERKSLQGTLELLSD--------S 524
             A+   +   +  W   A   I   +D        D R S  G   L +D        +
Sbjct: 543 AGASFDEWLARTTAWHRAANRPIERRYDNGRWIRLVDHRTSDGGIAGLRTDITDFKTIEA 602

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            LE  +  L  A+  L      + V     L    E    A   K+ F+  +S+E+R+P+
Sbjct: 603 ALEQKVADLELARNNLE-SQKQELVAKSADLELAKETAEAASRAKSDFLAIMSHEIRTPM 661

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           + ++G  DLL+ +    L ++Q  Y E    S   LL + NDILD + ++AG +K     
Sbjct: 662 SGMVGMIDLLRET---PLTAEQKGYAEIAKESVNSLLGVTNDILDFSKLEAGELKAEAID 718

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +   +      +  K     + I+ V++ G     V D  R+ QI   +++NA+ F+ 
Sbjct: 719 FDIEHTIGGAISLMKAKAQAKQLDIRTVLTPGLPKWLVGDPSRIRQILLNLINNAIKFTE 778

Query: 704 KGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           +G+ + +KA+      D  +    + + G  IP ++ + +FN FV       R+  G GL
Sbjct: 779 QGA-ISVKASYHSLDDDKIELRIEIVDTGIGIPMEVQQRLFNPFVQADTSISRKYGGTGL 837

Query: 757 GLSIVESFINLHGGHVSISSSDE-GVT---TINCRI 788
           GL+I +    + GG + + S  E G T   T++C I
Sbjct: 838 GLAICKQLALMMGGEIGVRSGPEPGSTFWFTVHCGI 873


>gi|115526880|ref|YP_783791.1| histidine kinase [Rhodopseudomonas palustris BisA53]
 gi|115520827|gb|ABJ08811.1| histidine kinase [Rhodopseudomonas palustris BisA53]
          Length = 450

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 120/237 (50%), Gaps = 10/237 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +E++  FV + S+ELR+PL  + GF D L+        +++ +++  + A +  + 
Sbjct: 209 LRRVEEMRVDFVANASHELRTPLAALSGFIDTLQGPARDDAKARE-RFLGIMHAQARRMA 267

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+L L+ V+        + + +  L+ +V + +     E  + ++     ++ +  
Sbjct: 268 RLIDDLLSLSRVELSAHVRPDAEVDIAPLVRQVIEGLEPLAQERQVVVETELPLEVATIA 327

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCK 736
            DR+ LL++F  ++ NA+ + + G  V++      AA    ++ F+V++ G  I  +   
Sbjct: 328 GDREELLRLFENLIENALKYGASGGRVVVSLGQADAADGTAEYRFAVRDFGPGIAPEHLP 387

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
            +  RF  V       + G GLGLS+V+  +N H G + I S+  +G T   C +PS
Sbjct: 388 RLTERFYRVDVGDSRAQGGTGLGLSLVKHIVNRHRGRLLIDSALGKGATFTAC-LPS 443


>gi|268680301|ref|YP_003304732.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618332|gb|ACZ12697.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 551

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 130/246 (52%), Gaps = 18/246 (7%)

Query: 550 RAERALTEKNEALRK---ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R ++ + E   A++K   A +IK+ F+ ++S+EL++P+  IIG  +LL   KL     K+
Sbjct: 12  RLQKMMEELKIAIKKTADAHQIKSQFLANMSHELKTPMNTIIGMGELLVHKKLP---EKE 68

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  I  S+  L++++NDILD + ++A  ++L   +  L  LL  + +    +  +  
Sbjct: 69  QRCLHKIVESAHHLMDIINDILDFSKIEANAIELKTVSFDLEKLLLSLSELFRIRAQQKG 128

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFI- 720
           I + +  D      +  D +RL Q+   +LSNA+ F+ KG  ++LK +    +D  + + 
Sbjct: 129 IELLIDLDKATNHPYKGDPKRLKQVLFNLLSNAVKFTQKGE-ILLKVSLIETQDENEIVH 187

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
           F++K+ G  I     K +FN F S A     R   GVGLGLSI +  + + GG +   S+
Sbjct: 188 FAIKDTGIGIEPKQTKDLFNAF-SQADMSTTRHYEGVGLGLSIAQGLVLMMGGEIQYKST 246

Query: 778 -DEGVT 782
             EG T
Sbjct: 247 LGEGST 252


>gi|239909191|ref|YP_002955933.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239799058|dbj|BAH78047.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 722

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 121/258 (46%), Gaps = 18/258 (6%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           PLP     L    +    R   A+ +  +A   A + K+ F+ +VS+ELR+PL  IIG  
Sbjct: 441 PLPTPADALPRAALF--ARDATAMIQARQAAEAASQAKSDFLANVSHELRTPLNGIIGMG 498

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L  S   +L+  Q Q +  I  ++  LL+LV ++LDL+ +++  + L+    VL+ +L
Sbjct: 499 QVLAAS---NLDPDQRQCLADIEQAAGALLHLVENLLDLSRLESEKLALDNQPFVLSSIL 555

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI- 709
             V+ ++A    E  + +     G +   +  D  +L Q    +  NA+ F+  GS  I 
Sbjct: 556 QGVEATLAPLAQEKGLELSAAVAGDVPELLYGDGGKLRQALLNLGGNAVKFTPAGSVTIE 615

Query: 710 ------LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
                    A   G+ +   F+V++ G  I +   + +F RF        RR  G GLGL
Sbjct: 616 AYCAKPCVLAGPEGETVEVGFAVRDTGIGIAKADQERIFERFTQVDASSTRRFGGTGLGL 675

Query: 759 SIVESFINLHGGHVSISS 776
           +I    I   GG +++ S
Sbjct: 676 AISRGLIEAMGGELAVDS 693


>gi|217962339|ref|YP_002340911.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|217065691|gb|ACJ79941.1| sensor histidine kinase [Bacillus cereus AH187]
          Length = 368

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 129/245 (52%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  + +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 124 ASEKLKEAVERGDFAESSKDQLIVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 183

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + ++++  
Sbjct: 184 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLEA 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DNG+ +  V N G S
Sbjct: 242 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNGEVVVQVMNYGDS 300

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F + +  R + R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 301 IPEEDLPYLFDMFYTGDKSRSENRGGTGLGLFIAKNIVEQHNGTIS-AESNIVRTMFEVR 359

Query: 788 IPSKE 792
           +P  E
Sbjct: 360 LPKDE 364


>gi|163754231|ref|ZP_02161354.1| periplasmic sensor signal transduction histidine kinase [Kordia
           algicida OT-1]
 gi|161326445|gb|EDP97771.1| periplasmic sensor signal transduction histidine kinase [Kordia
           algicida OT-1]
          Length = 896

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 125/241 (51%), Gaps = 10/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   NE L   D+ K+ F+  V++EL++P+T I   T+LL   +       ++Q+++ I 
Sbjct: 658 LKNVNEELVTKDKQKDEFLDTVAHELKTPITGIRAATELLMDDEDDMPKDMKNQFLKNIL 717

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L  L+N+ILD   ++ G + L+  T   NDL   +K+++A+     + +   I+D
Sbjct: 718 QDSDRLARLINNILDFEKLETGRLHLDLQT---NDLQKTIKKAVASIQQIASKKNITIND 774

Query: 675 GKLGSFVA--DRQRLLQIFSKILSNAMDF--SSKGSTVILKAARDNGDFIFSVKNNGSSI 730
               +     D  R+LQ+ + +LSNA+ F  + KG  V +     NG+   +VK+NG  I
Sbjct: 775 KTAHAITIKYDEDRILQVLTNLLSNAIKFCPTEKGE-VTIDFKLGNGEVEVTVKDNGKGI 833

Query: 731 PEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +    +F++F  + H+   + +G GLGL+I +  +  HGG +    + +   T+   +
Sbjct: 834 PAEDHNYIFDKFYQSKHQNTIKPQGSGLGLAITKQIVEKHGGKIWAKKAVKNGATLVFTL 893

Query: 789 P 789
           P
Sbjct: 894 P 894


>gi|160934781|ref|ZP_02082167.1| hypothetical protein CLOLEP_03656 [Clostridium leptum DSM 753]
 gi|156866234|gb|EDO59606.1| hypothetical protein CLOLEP_03656 [Clostridium leptum DSM 753]
          Length = 489

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A      +L  ++  + SF+ +VS+EL++P+T I GF D +    +     KQ+ Y++ +
Sbjct: 242 AFNNMAASLSSSEGTRRSFIANVSHELKTPMTTIAGFIDGILDGTIPP--DKQNYYLKIV 299

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S     L  LV  +LDL+ +D G +++N +   L D++  V  +    + +  + I+ + 
Sbjct: 300 SDEVKRLSRLVKTMLDLSRIDNGELRMNKTCFELRDIILSVMITFEDSIEKKEVEIRGLE 359

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D        D   + Q+   ++ NA+ F +    + ++        +  ++N+G  I  D
Sbjct: 360 DAPAIFVDGDPDMIHQVVYNLVENAVKFVNPQGYIDVRVLNKGTKAVVKIRNSGQGISAD 419

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F++F     +    + G+GLGL IV + I LHGG +++SS
Sbjct: 420 EIPLIFDKFYKTDKSRSMDKNGMGLGLYIVRTIIKLHGGDITVSS 464


>gi|39725604|dbj|BAD04925.1| ethylene responsive sensor [Chrysanthemum x morifolium]
          Length = 639

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 127/266 (47%), Gaps = 33/266 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  +        
Sbjct: 315 ESMRARDQLMEQNFALNLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALS---SLLLE 371

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L   Q   +E I  SS +L  LVND+LDL+ ++ G ++L      L+ L  EV   I 
Sbjct: 372 TELTPDQRAMIETILKSSNLLAALVNDVLDLSRLEDGSLELESEVFNLHGLFKEVVTLIN 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                 N  + +  D  L +F + D +RL+QI   ++ NA+ F +KG  V ++A+  + +
Sbjct: 432 PIASVKNTSMALNCDLDLPAFGIGDEKRLMQIILNVVGNAVKF-TKGGHVSIQASILSPE 490

Query: 719 F--------------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLG 757
           +                    +  VK++GS I +     +F +F        R  G GLG
Sbjct: 491 YLQEWRTPEFCPTLTEGLFYLLVQVKDSGSGIKQQDIPHIFTKFSEPRSASNRSGGAGLG 550

Query: 758 LSIVESFINLHGGHVSISSSDEGVTT 783
           L+I + F+NL GGH+ I S   G  T
Sbjct: 551 LAICKRFVNLMGGHIWIESGGLGKGT 576


>gi|46908181|ref|YP_014570.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093376|ref|ZP_00231143.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|226224552|ref|YP_002758659.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes Clip81459]
 gi|254825557|ref|ZP_05230558.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|254852849|ref|ZP_05242197.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|254931881|ref|ZP_05265240.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|254992997|ref|ZP_05275187.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J2-064]
 gi|255520088|ref|ZP_05387325.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J1-175]
 gi|300763741|ref|ZP_07073738.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|46881451|gb|AAT04747.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018247|gb|EAL09013.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|225877014|emb|CAS05723.1| Putative two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606182|gb|EEW18790.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|293583432|gb|EFF95464.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|293594798|gb|EFG02559.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|300515477|gb|EFK42527.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|328466295|gb|EGF37452.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 1816]
 gi|332312388|gb|EGJ25483.1| Sensor protein ResE [Listeria monocytogenes str. Scott A]
          Length = 596

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +   
Sbjct: 335 AILTLLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-ID 393

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  +
Sbjct: 394 GVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISN 453

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAAR 714
                 EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   
Sbjct: 454 FDVLAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTI 513

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHG 769
           D    + + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H 
Sbjct: 514 DEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHN 573

Query: 770 GHVSISS 776
           G +S+ S
Sbjct: 574 GKISVES 580


>gi|333001143|gb|EGK20713.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-272]
 gi|333015782|gb|EGK35119.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-227]
          Length = 918

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     L   Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKT----ELTPTQRDHLNTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + + I      + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE    
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +N  GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHS 504


>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 1318

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 131/255 (51%), Gaps = 27/255 (10%)

Query: 552 ERAL--TEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           ER L  TE  +A   AD +   K  F+ ++S+E+R+P+  I+G   L   ++L   +  Q
Sbjct: 585 ERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTEL---DPAQ 641

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI--VLNDLLNEVKQSIATKMHE 664
            +Y+  I+ S+  LL ++NDILD + ++ G  KLN  TI   L+++ + +   I+ K  E
Sbjct: 642 HKYLTRINESAKNLLGIINDILDFSKIEVG--KLNIETIDFSLDEVFDNLTNVISLKAQE 699

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGD 718
             I   +  D ++ +  + D  R+ Q+   +  NA+ F+ +G  V+     L   RD   
Sbjct: 700 KKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAVRIELLTERDVV- 758

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSIS 775
             FSVK+ G  I ++    +F+ F S A     R   G GLGLSI +  + L GG +S+S
Sbjct: 759 LHFSVKDTGIGIDKEKIAHLFDAF-SQADSSITREFGGTGLGLSISKQLVELMGGQLSVS 817

Query: 776 SS-DEGVT---TINC 786
           S+   G T   TI C
Sbjct: 818 STLGAGSTFAFTITC 832


>gi|313632600|gb|EFR99590.1| sensor histidine kinase ResE [Listeria seeligeri FSL N1-067]
          Length = 596

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 127/246 (51%), Gaps = 9/246 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +    
Sbjct: 336 ILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-IDG 394

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  + 
Sbjct: 395 VAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLEKVMANF 454

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAARD 715
                EN + + +  +     +  D  RL Q+   ++ NA+  + K      V+LK   D
Sbjct: 455 DVLAKENFVELGLELETPNLEYSYDPDRLEQVLINLIMNAIRHTGKEGYKGKVVLKQTID 514

Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGG 770
             N   I +V +NGS I E+    +F RF        RG+  G G+GL+IV++ +  H G
Sbjct: 515 ETNNKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHDG 574

Query: 771 HVSISS 776
            +S+ S
Sbjct: 575 KISVKS 580


>gi|239907937|ref|YP_002954678.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797803|dbj|BAH76792.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 735

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 131/264 (49%), Gaps = 16/264 (6%)

Query: 538 TMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           T+LT    ++T     E AL +  +A   A   K++F+  +S+E+R+P+  I+G  +LL 
Sbjct: 313 TLLTGATTDITRRKETELALAQARDAAMAASRAKSAFLASMSHEIRTPMNVILGMAELLA 372

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   S++S Q +Y+E I+ S  +L  L++DILD + ++A  + L         L  EV 
Sbjct: 373 ET---SISSSQRRYLEGIAGSGRMLSQLLSDILDFSQIEADRVALFPEVFDPAALAREVC 429

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVIL 710
                      + ++V +D  L    VAD  R+ Q+   ++ NA+ ++  G    S   L
Sbjct: 430 GLAGEAAAGKGLDLQVHTDPSLPDRLVADPLRVRQVLLNLVWNAVKYTQSGRITVSATPL 489

Query: 711 KAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFIN 766
                 G  +FSV+++G  I PE M + +F+ F    + AHR Q  G GLGLSI  +   
Sbjct: 490 SDPAGQGFVLFSVRDSGPGIAPEAMAR-IFDPFSQADAAAHRRQ-GGAGLGLSISRALAR 547

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           L GG V   S+    +  +  +P+
Sbjct: 548 LMGGDVVAESAPGAGSCFSFTLPA 571


>gi|166032915|ref|ZP_02235744.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC
           27755]
 gi|166027272|gb|EDR46029.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC
           27755]
          Length = 687

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E  R+A E K  F+ ++S+++R+P+  IIGF+DLL   K      K  +Y+  I 
Sbjct: 296 LKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLL--GKNLDNEEKVREYLGKIK 353

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S  IL+ +++ +L++A +++    L      L++L   V   + + +    I   + ++
Sbjct: 354 SSGNILMRIIDQVLEVARIESETAILKTEAANLSELFYSVNTVLESAIQMKGIHCSIDAN 413

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSS 729
            +      D+ +L +I+  I+SNA+ ++  G  + +     N D     ++F  ++ G  
Sbjct: 414 VQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCEDTGIG 473

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +    +F+ F     A   +  G GLGLSIV+SF+ L  G + + S     T     
Sbjct: 474 MAPEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESEPGKGTKFTVE 533

Query: 788 IP 789
           +P
Sbjct: 534 VP 535


>gi|163814660|ref|ZP_02206049.1| hypothetical protein COPEUT_00811 [Coprococcus eutactus ATCC 27759]
 gi|158450295|gb|EDP27290.1| hypothetical protein COPEUT_00811 [Coprococcus eutactus ATCC 27759]
          Length = 623

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 13/243 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +++R L E  +   KA+  K  F+  +S+++R+P+  IIGFTDLL    LG    K   Y
Sbjct: 231 KSKRELEEALDMANKANSAKTVFLNSMSHDIRTPMNAIIGFTDLLG-ENLGD-EKKARDY 288

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I +SS  LL+L+N++L++A +++G   L+   I +   L+ V      +M E +I  
Sbjct: 289 IGKIKSSSDYLLSLINNVLEMARIESGRSDLDERDISVEKSLDAVYWIFEAQMKEKHIDF 348

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFI-FSV 723
               + K  +   D  +L +I   I++NA  +S  G +V ++       RD    I  +V
Sbjct: 349 IWDVNVKHNNIKCDVVKLKEILMNIINNAYKYSLPGDSVAVRIEEIPCDRDGYARIQTTV 408

Query: 724 KNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           K+ G  + E+  + +F  F    ++   GQ  G GLG++IV+  ++L GG + + S  +G
Sbjct: 409 KDTGIGMSEEFLEHIFEDFTRAQTSTESGQ-FGTGLGMAIVKKIVDLMGGTIDVQSK-QG 466

Query: 781 VTT 783
           V T
Sbjct: 467 VGT 469


>gi|86157410|ref|YP_464195.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773921|gb|ABC80758.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 444

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 7/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTIL 620
           L + D ++  F+ H ++ELRSP+  I+   +LL+ S   GSL   +++ +  +  S+  L
Sbjct: 207 LEEVDRLRARFLAHATHELRSPVNAIVALAELLRMSCARGSLGDVEAR-LPLLVRSADAL 265

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              VN++LDL+ + AG M++  +   L  L+ EV  ++  ++      I++ +D   G  
Sbjct: 266 RATVNELLDLSRLQAGRMEVTIAPADLGALVAEVAATV--RLLAGARPIEIRADATPGLV 323

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           +  D  ++ +I   + +NA  F+S GS  +  A    G  + +V + G  I +     +F
Sbjct: 324 LETDGPKVRRILLNLGANAAKFTSAGSIRLGAAPDGRGGAVLTVADTGCGIDDADLPRLF 383

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             F  + +A      G GLGL+I  S   L GG VS++S     TT   R+P+
Sbjct: 384 VPFTQLEDATTRTHEGTGLGLAITRSLATLLGGSVSVASRRGEGTTFTVRLPA 436


>gi|70730998|ref|YP_260739.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345297|gb|AAY92903.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1039

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 11/243 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F +++   + E+ LT+  +A  KA+  K+ F+  +S+E+R+PL  ++G  +L+    L 
Sbjct: 427 AFADLSARAQMEQQLTQAKQAADKANGAKSVFLATMSHEIRTPLYGVLGSLELMG---LT 483

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q Q +E I  SS +LL +++DILD+  +++G + L         L+     S   
Sbjct: 484 DLDREQRQLLERIQVSSGLLLQIISDILDITRIESGQLSLGDQLFDPRALVQRCTASFVD 543

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
                 + +    D +L  + + D  R+ QI + ++SNA+ F+  G  VI++A  + G  
Sbjct: 544 SARNKGLLLFSWVDPELPPALLGDPGRISQILTNLISNAVKFTHSGQ-VIVRARAEPGSQ 602

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                   V + G  I ++  + +F  F   +AH     G GLGLSI      L G  + 
Sbjct: 603 GRVLLSLQVADTGIGIGKEEQQQLFIPFYQIDAHSHTVHGAGLGLSICAKLAALMGSQIH 662

Query: 774 ISS 776
           ++S
Sbjct: 663 LTS 665


>gi|302671320|ref|YP_003831280.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302395793|gb|ADL34698.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 942

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 28/225 (12%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+++R+P+  I+G  +++      S   +   Y E I  +   LL L+NDIL
Sbjct: 344 KSHFLSTMSHDIRTPMNAILGLNEMVLRD---SHEEEIVAYSESIRTAGRTLLGLINDIL 400

Query: 629 DLATVDAG---IMKLNYS-TIVLNDLLNEVKQSIATKMHENNI----RIKVISDGKLGSF 680
           D + ++AG   I+ ++YS   +LNDL+N V+     K    N+     I VI +G     
Sbjct: 401 DFSKIEAGKMDIINVDYSFASLLNDLVNMVQVKAEDKGLAFNLDVDRNIPVILNG----- 455

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIF---SVKNNGSSI-PED 733
             D  R+ Q+ + ILSNA+ ++ +GS       +  +D+ D I+   SV + G  I PED
Sbjct: 456 --DEIRIKQVITNILSNAVKYTKEGSINFKATFEKVKDSPDQIYLNVSVSDTGVGIKPED 513

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           M K +F  F  +  +      G GLG+SI +SF+N+ G H+ + S
Sbjct: 514 M-KRLFKAFERIEESKNRNVEGTGLGMSIAQSFLNMMGSHIEVES 557


>gi|90022757|ref|YP_528584.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
 gi|89952357|gb|ABD82372.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
          Length = 481

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 132/289 (45%), Gaps = 12/289 (4%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           D   S+ G    L ++ L +   P+ +           D  + + A  E  EA  +A   
Sbjct: 191 DSGASITGEEVTLDNTYLSWHFHPIFSEGVTTVLGYAFDISKQKNAELEAKEARAQA--- 247

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F   + +ELR+PL  IIGF+D+L       L+ + +  +  I  +   L  ++ D L
Sbjct: 248 RRDFYAKMMHELRTPLNAIIGFSDVLLWRSAAKLDERDNTALRNIKVAGIQLNEMITDTL 307

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG M +   T V + LL E+++ +        +    +S+  +  F +D++++ 
Sbjct: 308 DISKIEAGKMVVEPETFVASLLLQEMQEQMRYLAEAKGLTYHSVSNADI-PFHSDKKKIR 366

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRF 742
           Q+ + ++SNA+ ++  G   +      N       + + +V + G  IPED   S+F  +
Sbjct: 367 QVLANLISNAIKYTKSGDVRVSVIQTTNSIQTTESELVITVTDTGIGIPEDQINSLFEAY 426

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V  +     +G G+GL++V   I+L  G + + S     +T   + P
Sbjct: 427 QRVKESKNKDIQGTGIGLALVWELIHLLNGEIKVESIYGQGSTFTAKFP 475


>gi|319900106|ref|YP_004159834.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319415137|gb|ADV42248.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 479

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 119/217 (54%), Gaps = 4/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++G+LN +Q Q    I  ++  LL
Sbjct: 251 FKELDTAKTTFISTISHELKTPVSAILMSLQLLEDRRVGTLNDEQEQLSRSIRDNANRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            +  ++L++  V+AG +++        +L+    ++   +    NI I+V   DGK+   
Sbjct: 311 GITAELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADRFNIHIEVEYPDGKIPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   VI+  + ++ DFI   V++ G  I     +S+F
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVIIGVSHED-DFIEMYVQDFGKGIDPRYHQSIF 429

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 430 DRYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVQS 465


>gi|229916990|ref|YP_002885636.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229468419|gb|ACQ70191.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 381

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N +T+    N T + R    +  ++ EA+R  +E K+SF+  +S++ R+PLT I G+T+L
Sbjct: 113 NDKTLHLIFNFTRTPRGVFIMWRDQTEAVR-FEERKDSFLAELSHDFRTPLTAIHGYTEL 171

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L T   GS   K  Q +  +   S  L  LV++ LD         +L  +T  L  LL +
Sbjct: 172 LMTRHQGS--EKSYQMLTQVKQESERLERLVDNFLDYQKERYTADQLTVTTFALRPLLED 229

Query: 654 VKQSIAT--KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           V  S  T   +H        +S        AD ++L Q+   ++ NA+ +S  G TV  +
Sbjct: 230 VMSSYQTTSPLHTVTFETNDVS------IQADEKKLRQLLHNLIGNAIKYSPDGGTVHTR 283

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
                G  I SV + G  IPE+    VF+ +  V +A     +G GLGL I +     HG
Sbjct: 284 VFECAGTIILSVSDTGIGIPEEALPYVFDEYYRVESAAHQSIKGTGLGLRICKRIAEAHG 343


>gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
 gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
          Length = 1205

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 16/235 (6%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           A++ K+ F+ ++S+E+R+P+  IIG + L LKT     L   Q  Y++ +  S+  LL L
Sbjct: 477 ANQAKSDFLANMSHEIRTPMNAIIGMSYLALKTD----LTKAQRNYIQKVKLSADTLLGL 532

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILD + ++AG + + +    L ++L+ +   +  K  E  + + + +   +  +   
Sbjct: 533 INDILDFSKIEAGKLDIEHVDFRLENVLDNISNLVGLKASEQGLELLIHTSKDVPTALYG 592

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL QI + + +NA+ F+ +G   I   A     D+    F+V + G  +  +  + +
Sbjct: 593 DPLRLGQILTNLANNAVKFTEQGEVKITITADNLENDDVTLRFAVSDTGIGMTPEQTQKL 652

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT---TINCR 787
           FN+F        R+  G GLGL+I +    L GG + + S   EG T   TIN +
Sbjct: 653 FNKFTQADSSTTRKYGGTGLGLAISKELCLLMGGDIEVRSQFGEGSTFEFTINMK 707


>gi|121727325|ref|ZP_01680472.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V52]
 gi|147674544|ref|YP_001217203.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O395]
 gi|121630331|gb|EAX62728.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V52]
 gi|146316427|gb|ABQ20966.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O395]
 gi|227013560|gb|ACP09770.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O395]
          Length = 1146

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 584 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 643

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L + +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 644 MEILAS----RLKNSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLTD 699

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 700 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 758

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 759 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 818

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 819 LMNGKIEVKSEFEQGTQIQVNLP 841


>gi|160899262|ref|YP_001564844.1| response regulator receiver sensor signal transduction histidine
           kinase [Delftia acidovorans SPH-1]
 gi|160364846|gb|ABX36459.1| response regulator receiver sensor signal transduction histidine
           kinase [Delftia acidovorans SPH-1]
          Length = 392

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 15/238 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYI 613
           L E+ EALR    I   F+  +S++LR+PL +I    T L +    G    K +   E +
Sbjct: 155 LQERTEALR----INEMFMAVLSHDLRTPLQSIKAAATVLTRQPDPG----KVANMAERM 206

Query: 614 SASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            +SS  +  ++ D+LD+  +  A  + L+     L  LL    Q + T   E  +  +++
Sbjct: 207 LSSSQRMSRMIEDLLDVTRIRQAEGLPLSPQPASLQTLLQRTLQEVETGFPERRLESEMM 266

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             G L   + D +RL Q+ + +L NAM        V + A     D +     NG +IP 
Sbjct: 267 --GNL-EGIWDGERLCQVLTNLLGNAMHHGDPAQPVQVTADGRQDDRVSITVRNGGTIPA 323

Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++  ++FN F     R GQ +G+GLGL I    +  HGG + + S+D GVT+    +P
Sbjct: 324 ELLPTLFNPFRGGERRPGQHQGLGLGLFIAHQIVRSHGGRIDVRSAD-GVTSFRVELP 380


>gi|328472789|gb|EGF43638.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 220]
          Length = 597

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +   
Sbjct: 336 AILTLLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-ID 394

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  +
Sbjct: 395 GVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISN 454

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAAR 714
                 EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   
Sbjct: 455 FDVLAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTI 514

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHG 769
           D    + + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H 
Sbjct: 515 DEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHN 574

Query: 770 GHVSISS 776
           G +S+ S
Sbjct: 575 GKISVES 581


>gi|317483952|ref|ZP_07942889.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924826|gb|EFV45975.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 800

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 126/267 (47%), Gaps = 19/267 (7%)

Query: 539 MLTFVNVTDSVRA---ERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNII 588
           +  ++++TD       ++ L E++E LR       +A+  K+ F+  +S+++R+P+  I+
Sbjct: 251 LFIYIDITDITEQRVLQKKLEERSELLRNALEMAERANRAKSDFLSRMSHDIRTPMNAIM 310

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   + K S       +    ++ +  S+  LL L+NDILD++ +++G   L        
Sbjct: 311 GMLSIAKES--WDDPDRVRDCLDKVENSARFLLALINDILDMSKIESGKAILKKKAFDFA 368

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
                +      +  +  +R +V+    L  ++V D  +L QI   +L NA+ F+  G +
Sbjct: 369 AFTRNLAAMFYGQAEKKQVRFQVLLGRSLAEAYVGDELKLNQILINLLGNAIKFTEPGGS 428

Query: 708 VILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIV 761
           V+L    D       + +F+V + G  + +   K +F  F  ++  R  + G GLGLSI 
Sbjct: 429 VLLSVQEDKRSNKASELVFTVTDTGIGMEKSFLKKIFEPFEQDSQQRSNQGGSGLGLSIA 488

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           E +  +  G + + S+    +T   RI
Sbjct: 489 EKYARMMNGGIEVDSTPGKGSTFVARI 515


>gi|295697074|ref|YP_003590312.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
 gi|295412676|gb|ADG07168.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
          Length = 622

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 152/363 (41%), Gaps = 48/363 (13%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           T+ HL  GV      GR++  NPA   L    E R+              R++    G  
Sbjct: 261 TMQHLVSGVMALDGRGRVEWINPAMAEL--IGEQRV-----------IGRRFW----GIQ 303

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSV-------LEYSIIPLPNAQTMLTFVNVTDSV-R 550
            F  I    D   ++ +G      D V       +E  ++P+P           T  V R
Sbjct: 304 AFQPIYAMIDQAVRNGEGGR---YDGVFGPARREVEVHVVPIPRIPGQGQEAGSTKDVGR 360

Query: 551 AERALTEKNEAL--------------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            E     +  +L              R+ ++++  FV +VS+EL++P+T I G  + +  
Sbjct: 361 PEGRHFLRGSSLSGGAVVIIHDVTERRRLEQVRKEFVTNVSHELKTPVTAICGLAETVVE 420

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L     ++  ++E I   +  L  LV D+LDL+ +++ +  L+   + L ++  +V Q
Sbjct: 421 EDLAP--EERRHFLELIHREARRLEQLVRDLLDLSRLESHLTTLHRRPVDLAEMARDVVQ 478

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARD 715
                  +    + +  +G   + V D  R+ Q+ S ++ NA+ ++  G  V ++    D
Sbjct: 479 DYGYAAEQAGTDLYLDKEGDCRAEV-DPDRVRQVLSNLIDNALKYTPAGGRVDVRVLGTD 537

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             +    V + G  IP +    VF RF  V  A      G GLGL+IV+  + LHGG V 
Sbjct: 538 PREVKVEVADTGVGIPPEDRDRVFERFYRVDKARARTTGGTGLGLAIVKHVVQLHGGRVG 597

Query: 774 ISS 776
           + S
Sbjct: 598 VES 600


>gi|255034653|ref|YP_003085274.1| ATP-binding region ATPase domain-containing protein [Dyadobacter
            fermentans DSM 18053]
 gi|254947409|gb|ACT92109.1| ATP-binding region ATPase domain protein [Dyadobacter fermentans DSM
            18053]
          Length = 1871

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 11/239 (4%)

Query: 546  TDSVRAERALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            T  ++ ++   E+ + L  +    K  F  ++S+E+R+P+T I+G ++L+  +    LN 
Sbjct: 1464 TAEIQVQKEEIERQKQLVEQKSRFKEQFFANMSHEIRTPMTAILGMSELIFDT---PLNE 1520

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            KQ +Y   I  SS  LL ++ND+LD + ++AG          + D +  +   +     E
Sbjct: 1521 KQLEYARGIRYSSENLLAIINDVLDYSKIEAGKFSFINKPFQVGDRMERLGYILRVIAEE 1580

Query: 665  NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNG--DF 719
              + +++  D  +    + D  RL QI   +  NA+ F+  GS  I  A  +RD G    
Sbjct: 1581 KGLELRITVDSDVSPQVIGDPIRLHQILLNLAGNAVKFTENGSVSIHVAVLSRDAGQEQL 1640

Query: 720  IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             FSV + G  I ED  + +F  F  + +    ++ G GLGL I    +   GG + ++S
Sbjct: 1641 QFSVADTGIGIAEDKLEYIFETFTRIDDDSNSRQSGTGLGLFIARKLVEEQGGRMQVTS 1699


>gi|229918112|ref|YP_002886758.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469541|gb|ACQ71313.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 463

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+L   +E +  F+ +VS+ELR+PL+ I G+T++L+   L      ++QY + I   +  
Sbjct: 226 ESLGLVEEQRKEFLANVSHELRTPLSYIRGYTEMLQDETLD--EKTRAQYYDIIENETNR 283

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV D+LDLA ++     +    +V + +L +V   +        + I+   D  L  
Sbjct: 284 LQRLVTDLLDLAQLERDSYPMTKEPVVYSQVLEDVLYRLEPIARAKGVTIESDLDFDL-I 342

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL Q+   +L NA+ ++  G T+ +K   +    I  +++ G  IP++    + 
Sbjct: 343 ILGDHDRLEQVIGNLLDNALRYTDAGKTIHVKTFAETEYAITEIRDEGRGIPKEDLDKLT 402

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V+ +   +  G GLGL+I +  I  H G +  SS     TT+   +P
Sbjct: 403 ERFYRVNKSRTRKDGGTGLGLAIAKHIIERHEGSLHFSSEVGQGTTVTVGLP 454


>gi|149377909|ref|ZP_01895637.1| multi-sensor hybrid histidine kinase [Marinobacter algicola DG893]
 gi|149357799|gb|EDM46293.1| multi-sensor hybrid histidine kinase [Marinobacter algicola DG893]
          Length = 591

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 9/221 (4%)

Query: 559 NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           N+ L + D    +K+ F+  VS+ELR+PLT++ G   LL +   G LN K  +       
Sbjct: 342 NQLLEERDNLARLKDHFMSSVSHELRTPLTSLTGALKLLTSGVTGQLNDKSQKLASLALR 401

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +   L  LV+D+LD   +  G +K+   +  +  +L    +   T   E+++R+ V    
Sbjct: 402 NGERLQLLVSDLLDFNKLSDGSLKVRIQSEAIQPILYSAIEDNNTMAAEHHVRL-VSDSA 460

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDM 734
           +L   + D+ RL QI    +SNA+ FS + S V + A  ++ G    +V + GS +P+  
Sbjct: 461 ELPHLLCDKHRLRQILDNYISNAIKFSPQESVVTISARLNSAGGVRITVSDQGSGVPDSF 520

Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
             SVF RF + A  G  R   G GLGL+I      L    V
Sbjct: 521 ADSVFKRF-AQAETGTTRSVKGTGLGLAICAELAQLMNAEV 560


>gi|159897135|ref|YP_001543382.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890174|gb|ABX03254.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 785

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 121/245 (49%), Gaps = 5/245 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L+   +A   A + K+ F+ ++S+ELR+PLT IIG+ D+++   L S +      ++ 
Sbjct: 523 RELSRAKDAAEAASQTKSQFLANMSHELRTPLTAIIGYADVMREDLLDSNDQIYLADLDR 582

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I ++   LL L+ND+LDL+ ++AG M + +    ++ LLN+V  ++  ++  N+  + + 
Sbjct: 583 IRSAGAHLLGLINDVLDLSKIEAGKMPVYWEQTRVSILLNDVITTVRPQIDRNHNSLMID 642

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSS 729
                  F  D  +L ++   +L NA  F+  G+   ++ L    +       V + G  
Sbjct: 643 QTYHNLMFWTDISKLRRVLINLLGNAAKFTDHGTISLSLFLDETDEPACLQIRVCDTGIG 702

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +   ++F  F        R+  G GLGL+I  +   L GG + ++S     +T   +
Sbjct: 703 MTAEQVANLFQNFSQADASTTRKYGGTGLGLAISRNLCKLMGGDIEVTSELGHGSTFIVK 762

Query: 788 IPSKE 792
           +P  E
Sbjct: 763 LPWVE 767


>gi|332560034|ref|ZP_08414356.1| Multi-sensor hybrid histidine kinase precursor [Rhodobacter
           sphaeroides WS8N]
 gi|332277746|gb|EGJ23061.1| Multi-sensor hybrid histidine kinase precursor [Rhodobacter
           sphaeroides WS8N]
          Length = 825

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 15/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++   RAER LTE  +     ++ K  F+  +S+E+R+PL  + G  +LL  +    L+
Sbjct: 312 DISARRRAERELTEARDRALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTP---LD 368

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-- 661
            +Q + V  + AS+ ILL+ VN +LD+A  +A   + + + +V  DL   ++  IA +  
Sbjct: 369 PRQRELVSVLRASAEILLDHVNSVLDIARSEA---RPSVAEMVDFDLDRLIEDCIANQSG 425

Query: 662 ---MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +  N I  + ++ G +G    + QRL Q+   +L+NA+ F+  G  +I+++     D
Sbjct: 426 FAAVVGNRIDHRPLT-GPVGILNGEPQRLRQVLLNLLNNAVKFTRNGR-IIVESEVQGAD 483

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V + G  I  +  + VF+ FV+     +RR  G GLGL I      + GG +++ S
Sbjct: 484 VEIRVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGLGLGIARRLARIMGGDLTVQS 543

Query: 777 SDEGVTTINCRIP 789
           +    +    R+P
Sbjct: 544 TPGRGSRFTLRLP 556


>gi|313204634|ref|YP_004043291.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes
           WB4]
 gi|312443950|gb|ADQ80306.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes
           WB4]
          Length = 1000

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 117/227 (51%), Gaps = 5/227 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L  +   L +A  +K +F+ ++S+ELR+PL ++I  + +L       + + +  Y+E 
Sbjct: 470 RELEMQKIQLHEASRLKTNFLSNMSHELRTPLNSVIALSGVLSRRLNEKIPADELSYLEV 529

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  +   LL+L+NDILD++ +++G  +++ S  ++ +L+ ++   I  +  + NI +   
Sbjct: 530 IERNGKHLLSLINDILDISRIESGREEVDVSKFIVEELVTDIVSIIKPQAQQKNIDLIKA 589

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  K     +D  +   I   ++ NA+ F+ KGS V +   +       SV + G  I E
Sbjct: 590 TISKDIVITSDIDKCRHILQNLVGNAVKFTEKGS-VSIDVVKTQNAIEISVTDTGIGIAE 648

Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
                +F+ F   A  G  R   G GLGL+I + + NL GG V++ S
Sbjct: 649 SNIDHIFDEF-RQADGGTSRKFGGTGLGLAIAKKYANLLGGTVTVKS 694


>gi|196228611|ref|ZP_03127477.1| response regulator receiver sensor signal transduction histidine
           kinase [Chthoniobacter flavus Ellin428]
 gi|196226892|gb|EDY21396.1| response regulator receiver sensor signal transduction histidine
           kinase [Chthoniobacter flavus Ellin428]
          Length = 378

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 3/225 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L   NE LR+  E++++  Q + ++LRSPLT I G  +LL       L+ +  + +E 
Sbjct: 142 RELQRNNEELRRLQELRDNLTQMIVHDLRSPLTGIFGTYELLALEA-DKLSPEIQKMIEL 200

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S   +L+++N +LD++ ++AG ++L+     L  L  E    +A    +  + I+  
Sbjct: 201 SQGSLDQILSMINSLLDVSKIEAGELQLHRCDCDLVALAREAADMLAGIGGKRRVLIEPE 260

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S+    S   DR  + ++   +L NA+ F+     + ++  R N     SV +NG  I  
Sbjct: 261 SENLRLSI--DRDLIFRVLQNLLGNALKFTKPAGEIRVRLERRNDRVRVSVIDNGPGISP 318

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  + +F +F        R G GLGL+     I  HGG + + S+
Sbjct: 319 EYHRRIFEKFGQVECATTRTGTGLGLTFCRLVIEAHGGAIGVVSA 363


>gi|167738434|ref|ZP_02411208.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia pseudomallei 14]
          Length = 1082

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + +LL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIAELLDRLALSHAPLATQQGLKFYMVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWRAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVTLP 713


>gi|167719431|ref|ZP_02402667.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei DM98]
          Length = 1082

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + +LL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIAELLDRLALSHAPLATQQGLKFYMVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWRAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVTLP 713


>gi|166367635|ref|YP_001659908.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166090008|dbj|BAG04716.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 641

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 145/297 (48%), Gaps = 25/297 (8%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-------- 563
           + L   LE L D  L    IP  N  T   F N+ +  +   AL E  E LR        
Sbjct: 326 RDLARPLEKLRDYALNIQKIPSQNI-TPQNF-NIREINQLASALEEMLERLRLWGEEIVK 383

Query: 564 ------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ--YVEYISA 615
                  A+++KN F+ + S+ELR+PL  IIG    ++    G  NS+Q +  Y++    
Sbjct: 384 SWQEAENANQLKNQFLANTSHELRTPLNGIIGS---IRCVMDGFCNSEQEEKEYLQQADK 440

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S  LL +++DIL +A ++AG + +N   + L+ ++NEV       +    +++ ++   
Sbjct: 441 ASVHLLEIIDDILSIAKIEAGKLSVNPEPVDLHQIINEVINLQTASLQLKCLKLNLLFCP 500

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           ++    AD  +L Q+   ++SN++ F+  G+  ++    +    I  +       P+   
Sbjct: 501 EIPIVYADTTKLKQVILNVISNSIKFTDIGTISLITRLENTQAIITIIDTGIGIDPQQQS 560

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           K +F  FV       R+  G GLGL+I ++F+ + GG ++ISS  +G+ TT+   +P
Sbjct: 561 K-LFRPFVMIDGSTTRKFSGTGLGLAISKNFMKMMGGDITISSQGQGLGTTVEIILP 616


>gi|170743455|ref|YP_001772110.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168197729|gb|ACA19676.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 891

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 17/227 (7%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  ++   +LL +   G L ++Q +Y E I+ S   LL ++NDILD A
Sbjct: 273 FLATMSHEIRTPMNGMLVMAELLAS---GDLPARQRRYAEVIARSGQNLLAIINDILDFA 329

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN------NIRIKVISDGKLGSFVADRQ 685
            V+AG  KL+   I ++    EV  ++ T   E       ++   V  D    +   D  
Sbjct: 330 KVEAG--KLDLERIPVDP--AEVADTVVTLFGERARGKGLDLAALVAPDVPR-AIAGDPV 384

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS 744
           RL Q+    ++NA+ F+  G  +I    R+ G  +  SV + G  IP +   S+F  F  
Sbjct: 385 RLGQVLGNFVNNALKFTEAGHVLIRLEMREGGARLRLSVTDTGIGIPAEALGSLFTAFSQ 444

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 RR  G GLGLSI E      GG V + S     +T    IP
Sbjct: 445 ADQSTTRRFGGTGLGLSIAERLAAAMGGRVGVESRVGEGSTFFAEIP 491


>gi|28571078|gb|AAN39380.2| putative ethylene receptor [Chrysanthemum x morifolium]
          Length = 640

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 127/266 (47%), Gaps = 33/266 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  +        
Sbjct: 316 ESMRARDQLMEQNFALNLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALS---SLLLE 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L   Q   +E I  SS +L  LVND+LDL+ ++ G ++L      L+ L  EV   I 
Sbjct: 373 TELTPDQRAMIETILKSSNLLAALVNDVLDLSRLEDGSLELESDVFNLHGLFKEVVALIN 432

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                 N  + +  D  L +F + D +RL+QI   ++ NA+ F +KG  V ++A+  + +
Sbjct: 433 PIASVKNTSMALNCDLDLPAFGIGDEKRLMQIILNVVGNAVKF-TKGGHVSIQASILSPE 491

Query: 719 F--------------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLG 757
           +                    +  VK++GS I +     +F +F        R  G GLG
Sbjct: 492 YLQEWRTPEFCPTLTEGLFYLLVQVKDSGSGIKQQDIPHIFTKFSEPRSASNRSGGAGLG 551

Query: 758 LSIVESFINLHGGHVSISSSDEGVTT 783
           L+I + F+NL GGH+ I S   G  T
Sbjct: 552 LAICKRFVNLMGGHIWIESGGLGKGT 577


>gi|91772372|ref|YP_565064.1| GAF sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711387|gb|ABE51314.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 556

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 117/233 (50%), Gaps = 5/233 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + LR  D +KN F  ++S+EL++P+ +I GF++LL   K G LN +Q +  + +  ++  
Sbjct: 325 DELRSLDNLKNEFFANLSHELKTPMISIKGFSELLGDGKFGPLNVEQKKANDAVVRNAER 384

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L++ +L +     G  K ++  + +  L+    +    +   NNI  +      +  
Sbjct: 385 LKDLIDSLLYMCMEKEGKYKYDFVPLPIKRLILNSLEKARVQAGSNNIVFRDEIPENIPV 444

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
              D +RL    + IL NA+ F  +G  ++  + +D  D I   +K+NG  IP++    V
Sbjct: 445 IYGDEERLTTALNNILDNAVKFMLEGEVIV--SVQDEADHIHLRIKDNGIGIPKNKVDKV 502

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ F  V  +      G G+GL + +  I++H G + + S +   TT++  +P
Sbjct: 503 FDSFYQVDGSLTRMYGGTGIGLHVSKRIIDVHNGKIWLKSLEGFGTTVHILLP 555


>gi|83593696|ref|YP_427448.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
 gi|83576610|gb|ABC23161.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
          Length = 1560

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 10/232 (4%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            ERAL    +A  +A  +K  F+ ++S+E+R+P+  I+G   L++ +   +L   Q+ YV 
Sbjct: 879  ERALVLAKQAAEEASVVKGQFLANMSHEIRTPMNAILGMLTLVQRT---ALTPHQADYVC 935

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               +++  LL L+NDILD + ++AG + L      L  +L ++   ++    +  + +  
Sbjct: 936  KAHSAAGSLLGLLNDILDFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGVEVLF 995

Query: 672  -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNN 726
             I+     SF+ D  RL Q+   +  NA+ F+ +G  +    +L    D      +V + 
Sbjct: 996  DIAPHLPDSFIGDDLRLRQVLLNLAGNALKFTDQGQVIVSVGVLAREDDRLTMRMAVSDT 1055

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  I  D   S+F  F        RR  G GLGL+I    +   GG + + S
Sbjct: 1056 GIGIAADQLASIFGAFEQAETSTTRRFGGSGLGLTITRHLVERMGGVLRVES 1107


>gi|76811883|ref|YP_333619.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia pseudomallei 1710b]
 gi|254259576|ref|ZP_04950630.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
 gi|76581336|gb|ABA50811.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia pseudomallei 1710b]
 gi|254218265|gb|EET07649.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 1082

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + +LL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIAELLDRLALSHAPLATQQGLKFYMVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWRAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVTLP 713


>gi|107026341|ref|YP_623852.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116692471|ref|YP_838004.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
 gi|105895715|gb|ABF78879.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116650471|gb|ABK11111.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
          Length = 666

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 9/244 (3%)

Query: 553 RALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+L    +A  +AD    +K+  +  VS+ELR+PL  I G+ ++L+ +          Q 
Sbjct: 264 RSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRNADGQGF---AQQA 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  S+  L ++V D+LD +++  G ++L    + L  ++ +  + +      N + +
Sbjct: 321 VDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQANGLVL 380

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                       AD +RL Q+ S +LSNA+ F+  G  + +   R       SV + G  
Sbjct: 381 STEYAMPACVIPADGERLRQLLSNLLSNAIKFTPPGGRINVSLTRAGERVRLSVSDTGQG 440

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
           I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V  +S+  G   T+  
Sbjct: 441 IAPEYLPHLFDTFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVIATSAGAGRGMTVTV 500

Query: 787 RIPS 790
            +P+
Sbjct: 501 TLPA 504


>gi|302783905|ref|XP_002973725.1| two-component response regulator [Selaginella moellendorffii]
 gi|300158763|gb|EFJ25385.1| two-component response regulator [Selaginella moellendorffii]
          Length = 736

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 161/366 (43%), Gaps = 45/366 (12%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD----D 509
           G + + +P  R ++ +    + P +    +  T +  Y   D   +   ++   +    D
Sbjct: 206 GIVPIHHPTLRQVFSSNRAVVIPSSSPVAMTRTHAGKYISGDAVAVRVPLLRMVNFPIVD 265

Query: 510 ERKSLQGTLELL-----SDSVLEYSIIPLPNAQTMLTFVNVT---DSVRAERALTEKNEA 561
             +  +G   LL     SDS   + I  L   +  +   +     +S+R+   L E+N A
Sbjct: 266 WPEPAKGPYALLVLILPSDSARRWRIHELELVEVAVALSHAAILEESIRSRDLLVEQNIA 325

Query: 562 LRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  A +         N F+  +++E+R P+  II  + LL+ S+L   N++Q   VE I 
Sbjct: 326 LDAARQEAETAVSACNDFLAVMNHEMRVPMHTIITLSSLLQDSQL---NAEQRSMVETIL 382

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S +L  L++D+LDL+ ++ G  +L  +   L  L  EV   +        + I +   
Sbjct: 383 RNSRLLAKLIDDVLDLSKLEDGSFQLEIAPFNLLFLFREVYNLVKPIAAVKKLYITMNLA 442

Query: 675 GKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARD---------NGD 718
             L  F V D +RLLQI   I+ NA+ F+  GS  +       + +RD          GD
Sbjct: 443 ADLPEFAVGDEKRLLQIVLFIIGNAVKFTKDGSITVSACMERPEYSRDPRAPEFLPTQGD 502

Query: 719 FIF----SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             F     VK+ G  +       +F +FV      +R G GLGL++ + F++L GGH+ I
Sbjct: 503 SHFYIRIQVKDTGIGLRSQDIPKLFTKFV---QVNKRSGPGLGLALCKRFVSLMGGHIWI 559

Query: 775 SSSDEG 780
            S   G
Sbjct: 560 ESEGLG 565


>gi|134277100|ref|ZP_01763815.1| putative sensor histidine kinase/response regulator MrgS
           [Burkholderia pseudomallei 305]
 gi|134250750|gb|EBA50829.1| putative sensor histidine kinase/response regulator MrgS
           [Burkholderia pseudomallei 305]
          Length = 1082

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + +LL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIAELLDRLALSHAPLATQQGLKFYMVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWRAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVTLP 713


>gi|90023344|ref|YP_529171.1| hypothetical protein Sde_3704 [Saccharophagus degradans 2-40]
 gi|89952944|gb|ABD82959.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 506

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 119/232 (51%), Gaps = 4/232 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYI 613
           L E+   +   DE++   + HVS++LR+PL +++G+ +  + +K  +L+++Q++ Y+   
Sbjct: 268 LEEQYNTVITVDELRKELLSHVSHDLRTPLASLLGYLETWEMNK-DTLSTEQTELYISTA 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  +  LV  + +LA +D G +++N   IV+ +L+ +V Q       E NI + V  
Sbjct: 327 KRNAQKISRLVEQLFELAYLDGGNVQVNKEKIVIAELVQDVLQKFYIAAQEKNISLAVSP 386

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  + D ++L ++FS ++ NA+  +  G ++I++           V + G  IP+ 
Sbjct: 387 QDSRIEVMGDIEKLDRVFSNLIENALRHTPDGGSIIVRLQPKAQYVSIEVTDTGIGIPKS 446

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
               +F+      N+ RG     GLGL+I    ++LH   + ++S +   TT
Sbjct: 447 DITRIFDPHFKAGNSIRGNSANGGLGLAITRRLLDLHQAKIKVASEENKGTT 498


>gi|148548845|ref|YP_001268947.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148512903|gb|ABQ79763.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 1210

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 128/247 (51%), Gaps = 15/247 (6%)

Query: 555 LTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYV 610
           + E  +A ++AD+    K++F+  +S+E+R+P+  +IG  +L +K +  G ++      +
Sbjct: 694 VMELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVDRSA---L 750

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E    S+  LL L+ DILD+  +++G + L    + L  L+  V +    +  +  + ++
Sbjct: 751 ELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKGLALE 810

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVK 724
           V I+       + D  R  Q+ S ++SNA+ F+  G   I  +  D+G          V+
Sbjct: 811 VQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRICVSLLDDGTSTPAVLELEVR 870

Query: 725 NNGSSIPEDMCKSVFNRFV-SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I  D  + +FN F+ +N H +G R G GLGL+I  +   + GG +S+ S ++  T
Sbjct: 871 DSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMMGGSLSMKSLEDVGT 930

Query: 783 TINCRIP 789
            +  ++P
Sbjct: 931 QVRLKMP 937


>gi|125975296|ref|YP_001039206.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|256003045|ref|ZP_05428037.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|125715521|gb|ABN54013.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|255992736|gb|EEU02826.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316939458|gb|ADU73492.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 679

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 131/261 (50%), Gaps = 5/261 (1%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++GT E +S   L+Y +     +   ++F     ++R    L +  E   K + +K   +
Sbjct: 402 IEGT-EQISRGNLDYEMNIGKMSPVFVSFAQNISNIRG--GLKKAVEEAIKGERMKTELI 458

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS++L++PLT+II + DLLK  ++GS   K  +Y+  +   S  L  L+ D+++ +  
Sbjct: 459 TNVSHDLKTPLTSIINYVDLLKREEMGS--QKAKEYIGILEEKSARLKVLIEDLVEASKA 516

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
            +G + +N+  + L++L+ + +     KM ++ + I++ ++       AD + + +I   
Sbjct: 517 SSGNLAVNFEKVDLHELVLQAQGEYQDKMEKSGLDIRISAEDNNIFVRADGRHMWRIIEN 576

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++SN + +S +GS V +   R+  D +  +KN  ++      + +  RFV         G
Sbjct: 577 LMSNVLKYSLQGSRVYIDITRNQTDGVLVIKNISATPLNIPVERLTERFVRGDEARTTEG 636

Query: 754 VGLGLSIVESFINLHGGHVSI 774
            GLGLSI +S   L  G   I
Sbjct: 637 SGLGLSIAQSLTTLQKGKFDI 657


>gi|333026722|ref|ZP_08454786.1| putative two-component system sensor kinase [Streptomyces sp.
           Tu6071]
 gi|332746574|gb|EGJ77015.1| putative two-component system sensor kinase [Streptomyces sp.
           Tu6071]
          Length = 546

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  AL  +   +   +E    FV  +S+ELR+PLT I   T++L+  ++ +L+      V
Sbjct: 244 AAAALERRVADMSAREEASRRFVADMSHELRTPLTAITAVTEVLE-EEIDTLDPMIEPAV 302

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             + + +  L  LV +++++   DAG  +L    +   D+ +++   I  +   + + + 
Sbjct: 303 RLVVSETRRLNTLVENLMEVTRFDAGTARLVCDDV---DIADQITACIDARAWLDAVEL- 358

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              D + G     D +RL  I + ++ NA+     GS V +    +    +  V+++G  
Sbjct: 359 ---DAERGIMARVDPRRLDVILANLIGNALKHG--GSPVRVSVRVEGPSLVIRVRDHGPG 413

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           IPED+   VF+RF  ++A R +  G GLGLSI ++  ++HGG ++ ++S EG      R+
Sbjct: 414 IPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAQANAHIHGGGITAANSPEGGAVFTLRL 473

Query: 789 P 789
           P
Sbjct: 474 P 474


>gi|330829621|ref|YP_004392573.1| hypothetical protein B565_1921 [Aeromonas veronii B565]
 gi|328804757|gb|AEB49956.1| PAS, putative [Aeromonas veronii B565]
          Length = 1322

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 7/251 (2%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            + T  V  ++AL   +E  ++A   K  F+  +S+E+R+P+  ++G  + L ++    L+
Sbjct: 761  DATARVEQDQALQHSHEQAQQAVLAKGRFLAAISHEIRTPMNAMLGLLEWLAST---PLS 817

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q   +  +  +   LL L+ND+LD +  +   + L+       +L   V     TK  
Sbjct: 818  REQDSALARVRQAGDELLGLLNDVLDFSRNENSKLSLSPQPTDFAELCEHVVAVHWTKAR 877

Query: 664  ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               +++++  D  L +    D  R+ Q+   +LSNA+ FS +G  V+L A        F 
Sbjct: 878  AKGLQLRLKLDPALPALQTLDPHRVRQVLHNLLSNAIKFSLRGE-VVLWAEVVASTLRFG 936

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  I   M  ++F  F   A  GQ R  G GLGL+I +  I   GG + +     G
Sbjct: 937  VDDQGPGITAKMRTTLFMPFEQFAVEGQLRAPGTGLGLAICKQLIEQMGGLIDVEGRAGG 996

Query: 781  VTTINCRIPSK 791
             +   C +P K
Sbjct: 997  GSRFYCELPLK 1007


>gi|313902102|ref|ZP_07835513.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467620|gb|EFR63123.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 466

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 18/239 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++  A  ++  FV   S+ELR+PLT I+G  DLL+  + G    +Q++ +E   + +  
Sbjct: 238 DSIETAYRLQQRFVADASHELRAPLTAILGNLDLLR-RRPGLPPEEQARALEEARSEAER 296

Query: 620 LLNLVNDILDLATVDAG----IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           L  LV D+L LA  DAG    I   +   +VL       + +   ++  + +    +   
Sbjct: 297 LSRLVADLLSLARADAGVPLVIKPFDVDAVVLEAFQEARRLARGQELVLDPLEPVHVP-- 354

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPED 733
                  DR R+ Q+   +L NA+ ++  G   T+ L+ A D G  I +V + G  IP  
Sbjct: 355 ------GDRDRIKQLLLILLDNAIKYTPAGGRITLGLRGAGDGG-AILTVADTGVGIPPA 407

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               VF RF     A      G GLGL I    +  H GH++I S+    TT+  R+P 
Sbjct: 408 DLPHVFERFYRADPARSRDPGGTGLGLPIARWIVEQHQGHITIDSAPGRGTTVTVRLPG 466


>gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980]
 gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1464

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 128/240 (53%), Gaps = 16/240 (6%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++A  +K+ F+ ++S+E+R+P+  +IG  +LL      +L+ +Q +  E I  S+  L
Sbjct: 725 AAKEASRLKSQFLANMSHEIRTPIAGVIGMAELLTDM---NLDEEQQECAENIQRSANAL 781

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RIKVISDGK 676
           L ++NDILD + V++G + +      L+ ++ +V + +       N+     I V  D  
Sbjct: 782 LTVINDILDFSKVESGRLDIEEVQFSLSVVVRDVSKMLGFAAERKNLMFDSDITVGVDKD 841

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI---FSVKNNGSSIP 731
           L   + D  R+ QI + +L+N++ F+S+G     ++K  R++ D I   F V++ G  I 
Sbjct: 842 L-IVMGDPGRVRQIITNLLTNSIKFTSEGRVKFSVIK-EREDADTIEVKFVVEDTGIGIE 899

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E++ K +F  F        RR  G GLGL+I ++ ++L  G +++ SS    TT    IP
Sbjct: 900 EEVRKRLFKPFSQADSSTARRFGGTGLGLTISKNLVDLMHGRITLESSLGQGTTATFWIP 959


>gi|120601171|ref|YP_965571.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561400|gb|ABM27144.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 839

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 120/248 (48%), Gaps = 12/248 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VT+  R    L    +A   A++ K+ F+ H+S+ELR+PL  ++G   LL       +
Sbjct: 411 LDVTERKRVLAELRTARDAAEAANKAKSEFLAHMSHELRTPLNGVMGMLQLLDE----HV 466

Query: 603 NSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + Q + +++    SS  LL +++DILDL+ ++AG + L         +L  V  S+   
Sbjct: 467 AAPQGRAWLDVALESSRALLRILSDILDLSRIEAGRLDLMQEPFTPESVLAPVLVSLHRT 526

Query: 662 MHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF 719
           +    +RI   + D      V D  R+ Q+   +L NA  ++ +G   V ++  R NG  
Sbjct: 527 VEGRAVRIVNEMDDSMPPVLVGDPGRIRQVLLNLLGNAAKYTERGEVRVGMRVLRRNGKA 586

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +     V + G  I ++  +     F       G  RGVGLGL IV   + L GG + I 
Sbjct: 587 LRVHLHVTDTGVGIADEQLQRALEPFGRLRQGSGLPRGVGLGLPIVVRLVRLMGGTLCI- 645

Query: 776 SSDEGVTT 783
           +S++GV T
Sbjct: 646 ASEQGVGT 653


>gi|325000956|ref|ZP_08122068.1| multi-sensor signal transduction histidine kinase [Pseudonocardia
           sp. P1]
          Length = 539

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 158/368 (42%), Gaps = 51/368 (13%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           + G+A+  P GRI  +N A   L   +      G  +  +   C+    E+         
Sbjct: 200 ATGMALADPHGRITDANRALTELLGRDIT----GERVDEVLVPCAGAAGEA--------- 246

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
                  R S  G  EL  +  +  S +  P+   +   V V D       LT++  ALR
Sbjct: 247 -------RASHAGGAEL--ELAVTSSPVHGPDGGVVQLSVAVLD-------LTQRRAALR 290

Query: 564 K----------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +                A   K+ FV  + +ELR+PL  I GF +LL T  L +   +++
Sbjct: 291 ERQARHEAEVARAAAESASRAKSRFVAALGHELRTPLQAISGFAELLGTLDLPA--DRRA 348

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I+ +++ +L+LV+++LD+A V+AG + ++   +    L +EV   +     E  +
Sbjct: 349 GALDRIAGATSHILSLVDEVLDVARVEAGALPVHPERVDAAALTDEVLDLLGPVAGERGV 408

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +  +  G     +AD +RL Q+   ++ N + ++     V +            V+++G
Sbjct: 409 TLHHVPGGA-ADVLADPRRLRQVLINLVGNGIRYNRPDGWVTVGIDGGGAGVRLVVRDSG 467

Query: 728 SSIPEDMCKSV---FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             IPE +   +   F+R     H    +G+GLGL +    +   GG ++ISS  +  TT 
Sbjct: 468 RGIPEHVTGRIFVAFDRLDLAEHGPADQGIGLGLPLARGLVEAMGGTLTISSVVDAGTTA 527

Query: 785 NCRIPSKE 792
              +P  E
Sbjct: 528 VVALPRVE 535


>gi|319650219|ref|ZP_08004365.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317398050|gb|EFV78742.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 473

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 13/243 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E NE +++ +  +  F+  VS+ELR+PLT I G  + +K   +     ++   +  I 
Sbjct: 233 LKESNEEIKRLENRRRKFIADVSHELRTPLTTISGLAEGIKGGLIPEAEKEKGMIL--ID 290

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L+ LVN+ LD   + +  ++LN   I L +    VK+ +  +  E   RI + ++
Sbjct: 291 REAKRLIRLVNENLDYEKIRSNQLQLNKMDIDLLEAFEIVKEQLEFQAGEKGNRIYLEAE 350

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             + S  AD  RL+QI   I+ N++ F+ +GS + L+        +  +++ G  I    
Sbjct: 351 EGV-SVHADYDRLIQILVNIVKNSIQFTDQGS-IFLRGHEGPDQTVIEIEDTGIGIDPQE 408

Query: 735 CKSVFNRFV------SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +S++ RF       +N   G+    G+GLSIV+  + LH G +++SS  E  T    R 
Sbjct: 409 IESIWLRFYKADLSRTNHSFGE---FGIGLSIVKQLVQLHSGEIAVSSEKEKGTKFTIRF 465

Query: 789 PSK 791
           P K
Sbjct: 466 PRK 468


>gi|288940234|ref|YP_003442474.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895606|gb|ADC61442.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1062

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 11/232 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE AL  K EA R A++ K+ F+ ++S+E+R+P+  IIG T LL      S+ +++ + +
Sbjct: 519 AELALA-KQEAER-ANQAKSLFLANMSHEIRTPMNAIIGLTHLLGREI--SVPAQRDRLL 574

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  ++  LL+++NDILD++ ++AG ++L  S      LL++V   IA ++    +  +
Sbjct: 575 K-IDGAAKHLLSVINDILDISKIEAGKLELQTSDFSPRVLLDQVSALIAEQVQSKGLDYR 633

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNN 726
           V +         D  RL Q     L NA+ F+ +G       +L+   ++    F V + 
Sbjct: 634 VDAGPLPVVLHGDATRLRQALLNYLGNALKFTERGRIQLQARLLEDGNEDALISFEVIDT 693

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  IPE+M   +F  F        RR  G GLGL+I      L GG   + S
Sbjct: 694 GIGIPEEMQGRLFTLFEQGDGSPIRRYGGTGLGLAITRRIAELMGGSAGVES 745


>gi|283850786|ref|ZP_06368072.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573709|gb|EFC21683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 661

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 15/258 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E  L ++ E +  A + K+ F+ ++++ELR+PL  IIG T L   +  G   
Sbjct: 242 DITALKETESQLRKEKELVFSASQAKSQFLGNITHELRTPLNGIIGATQL---ALQGGSG 298

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +    +  S   LL++VN++L+LA +DA  ++   S     DLL  + +S + +  
Sbjct: 299 EDQEELWGIVEDSGKRLLSIVNNVLELADIDAAAIEPVLSVCDARDLLAALVRSYSVRAK 358

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAA 713
             +IR     D ++    V D  RL QI S ++ NA+  +  GS  I         +  A
Sbjct: 359 VKDIRFVTTVDPRIPHRLVGDVFRLRQILSNLVDNALKCTGAGSIEIRVKKISTSRVAFA 418

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                 +F V++ G  I +D+   +F  F    H   +R  G GLGLSI    + + GG 
Sbjct: 419 PHYCTLLFMVRDTGIGISKDLQSKIFEDFELAEHYLTKRVSGAGLGLSIARHLVEMLGGQ 478

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S+ +  +T    +P
Sbjct: 479 IWVKSAPKCGSTFYFTVP 496


>gi|220907212|ref|YP_002482523.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863823|gb|ACL44162.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1330

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 4/215 (1%)

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            IK+ F+  +S+ELR+PL  I+G++ LL++ ++ +   K  Q +  I  ++   + L++D+
Sbjct: 961  IKDEFLAVLSHELRTPLNPILGWSKLLQSPQISA--QKLQQGLATIERNAKQQVQLIDDL 1018

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD + +  G + LN + I L++ +    +++        I+++V     LG    D  RL
Sbjct: 1019 LDTSRIIRGQLSLNLAVINLSEPILAALETVRLSAETKEIKLEVKLGSWLGQIRGDVGRL 1078

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             Q+   +LSNA+ F+  G  + ++ ++ +      V++ G  I       VF  F     
Sbjct: 1079 QQVVWNLLSNAIKFTPPGGRITVRLSQVDRWAQIQVRDTGKGIQPQFLPHVFELFRQEDS 1138

Query: 748  RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
               R   G+GLGL+I    +  HGG +  +S  EG
Sbjct: 1139 STTRSFGGLGLGLAIARQVVEAHGGTIMAASQGEG 1173


>gi|281419286|ref|ZP_06250302.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|281407152|gb|EFB37414.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 679

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 131/261 (50%), Gaps = 5/261 (1%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++GT E +S   L+Y +     +   ++F     ++R    L +  E   K + +K   +
Sbjct: 402 IEGT-EQISRGNLDYEMNIGKMSPVFVSFAQNISNIRG--GLKKAVEEAIKGERMKTELI 458

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS++L++PLT+II + DLLK  ++GS   K  +Y+  +   S  L  L+ D+++ +  
Sbjct: 459 TNVSHDLKTPLTSIINYVDLLKREEMGS--QKAKEYIGILEEKSARLKVLIEDLVEASKA 516

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
            +G + +N+  + L++L+ + +     KM ++ + I++ ++       AD + + +I   
Sbjct: 517 SSGNLAVNFEKVDLHELVLQAQGEYQDKMEKSGLDIRISAEDNNIFVRADGRHMWRIIEN 576

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++SN + +S +GS V +   R+  D +  +KN  ++      + +  RFV         G
Sbjct: 577 LMSNVLKYSLQGSRVYIDITRNQTDGVLVIKNISATPLNIPVERLTERFVRGDEARTTEG 636

Query: 754 VGLGLSIVESFINLHGGHVSI 774
            GLGLSI +S   L  G   I
Sbjct: 637 SGLGLSIAQSLTTLQKGKFDI 657


>gi|149190330|ref|ZP_01868603.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii
           AK1]
 gi|148835819|gb|EDL52783.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii
           AK1]
          Length = 783

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 128/251 (50%), Gaps = 19/251 (7%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  S    LN++Q ++
Sbjct: 264 RDITERKRHQESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS---HLNTEQRKH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L ++ NDI+D+   D   ++L    +   D + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGHIFNDIIDMDKFDRRKLELFPEPLNFEDFVTELESISALMAEQKGLRF 380

Query: 670 KV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDN-GDFIFSVK 724
            +  ++D   G  V D  RL Q+   ++SNAM F+ +G  V+  +A   DN    I  V+
Sbjct: 381 DLERLTDLPEG-VVVDATRLRQVIWNLVSNAMKFTKQGGVVMTISADIEDNYAHIIIEVE 439

Query: 725 NNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IP+     +F  +    S        G G+GL++ +  I +  G +++  S+EG 
Sbjct: 440 DTGIGIPQHELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLIKMMDGDITV-DSEEGF 498

Query: 782 T---TINCRIP 789
               T++  +P
Sbjct: 499 GSTFTVSINVP 509


>gi|116695907|ref|YP_841483.1| sensor protein rcsC [Ralstonia eutropha H16]
 gi|113530406|emb|CAJ96753.1| Sensor protein rcsC [Ralstonia eutropha H16]
          Length = 1131

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 123/259 (47%), Gaps = 15/259 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           F  V D   A++AL E+  + ++A E     +++F   +S+E+R+PL  ++G  +LL   
Sbjct: 502 FCAVQDCT-AQQALQEQLRSAQQATEAMMRARSTFFAAMSHEIRTPLNALLGNLELLAR- 559

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             GS  +  +  +  + +++  L  +VND+LD + +DAG ++L  +     + L  V  +
Sbjct: 560 --GSGLAAHAPRLRALDSAAEALRRIVNDVLDFSKIDAGKLRLVNAPFRPVEALESVALT 617

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            A  +    IR  + +S         DR RL+Q+ + +LSNA  F++ G   +    R +
Sbjct: 618 HAPMVAGRPIRFHLQLSPSLDAEVTGDRMRLVQVLNNLLSNAFKFTASGRITLNGELRQD 677

Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGG 770
                  +  V ++G  +P  +   VF  FV    A   +  G GLGLSI      L GG
Sbjct: 678 HHGTQRLVCRVSDSGIGMPPSLAARVFQPFVQGDAATASRYGGTGLGLSICARLCELMGG 737

Query: 771 HVSISSSDEGVTTINCRIP 789
            +S+ S  +  +     +P
Sbjct: 738 SISVDSVPDVGSAFTVSVP 756


>gi|118580297|ref|YP_901547.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503007|gb|ABK99489.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 604

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 129/269 (47%), Gaps = 18/269 (6%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           ++    E +I+    A+ +     +++S+R E+      EA   A   K+ F+ ++S+EL
Sbjct: 179 MAKEATEAAILAKETAKALRLEKEISESLRREK------EAAESATRAKDQFLANMSHEL 232

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+T ++G   L    +L         Y+    +S+  LL ++NDILD+  ++AG + +
Sbjct: 233 RTPMTGVLGMLQLALEEELAP---TLRNYLGTAHSSANSLLQILNDILDMTKIEAGKIII 289

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699
                     +      I  ++    + I + +++      V D+ RL Q+   +++NA+
Sbjct: 290 EEMPFSPRRCVTGAVDIITPEVRRKGLDIAISVAEEVPDKLVGDQMRLRQVLINLIANAV 349

Query: 700 DFSSKGSTVI-LKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752
            F+++G   + + A   N D    + F+V + G  IPED    +F+ F  V  +H     
Sbjct: 350 KFTNEGKVAVQVTAGGTNSDGKREYTFAVTDTGIGIPEDKKDLLFHVFSQVDASHTRTYG 409

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           G GLGL+I +  + L GG +   S  EGV
Sbjct: 410 GTGLGLAICKELVELMGGMIDFDSK-EGV 437


>gi|257439704|ref|ZP_05615459.1| putative response regulator receiver domain protein
           [Faecalibacterium prausnitzii A2-165]
 gi|257197844|gb|EEU96128.1| putative response regulator receiver domain protein
           [Faecalibacterium prausnitzii A2-165]
          Length = 1070

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 152/326 (46%), Gaps = 48/326 (14%)

Query: 500 FAAIITSFDDE--RKSLQGTLELLSDSVLEY-----------SIIPL-----PNAQTMLT 541
            AA+   F  E  RK+LQG  ++      EY           S IPL        + +L 
Sbjct: 473 LAAMDALFSPENIRKNLQGENDIYK---FEYCSIDENTYKIGSFIPLEWDGTKLVKALLA 529

Query: 542 FVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++V+   +AE    +AL E   A   A   K  F+ ++S+++R+P+  I+G T +    
Sbjct: 530 SMDVSQEKKAEIESHKALKEAYRAAENASRAKTEFLSNMSHDIRTPMNAIVGLTAI---- 585

Query: 598 KLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL----NDL 650
             G+    Q + VE    I+ SS  LL L+N++LD+A +++G M L      L    ++L
Sbjct: 586 -AGANIESQDKVVECLGKITKSSRHLLGLINEVLDMARIESGRMSLAEEDFSLPELVDNL 644

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L   K  I    H+  + I+ I      +   D  R+ Q+F  ++SNA+ ++  G  + L
Sbjct: 645 LTLTKPVIDEHHHQLEVHIEHIEH---EAVCGDSLRIQQVFVNLMSNAVKYTPDGGNITL 701

Query: 711 ------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLGLSIVE 762
                     + G + FS+++NG  +  +  K +F  F  ++ HR  + +G GLG++I  
Sbjct: 702 TIKEKPNGFSELGCYEFSIEDNGIGMTPEFQKIMFEPFSRADDHRTTKVQGTGLGMAIAR 761

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
           + +NL  G + + S+    T I   +
Sbjct: 762 NIVNLMNGDIQVESAPNKGTKITVTV 787


>gi|220909483|ref|YP_002484794.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866094|gb|ACL46433.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1331

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E   +A+ IK+ F+  +S+ELRSPL  I+G+  LL+   L    +KQ+  +  I  ++ +
Sbjct: 956  EEAERANRIKDEFLSILSHELRSPLNPILGWAQLLQIKTLDQTTTKQA--LATIEHNAKL 1013

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
               LV+D+LD+A +  G + L  + + L  ++    + + T     ++ ++  ++D  +G
Sbjct: 1014 QTQLVDDLLDVARILRGKLSLQEAPVNLVSVIAAALEVVKTAADVKSVTLQPELTD--IG 1071

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                D  RL QI   +LSNA+ F+  G  V ++  +       +V + G  I       +
Sbjct: 1072 QVRGDEARLQQIVWNLLSNAIKFTPTGGRVTIRLEQVEDQAQITVTDTGIGIQPQFLPHI 1131

Query: 739  FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            F  F        R+  G+GLGLSIV+  +  HGG ++  S  E    T   ++P
Sbjct: 1132 FESFRQQDTSISRQYGGLGLGLSIVKYLVEAHGGTITAESPGENQGATFTVQLP 1185


>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
 gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
          Length = 758

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +A   AD  K+ F+ ++S+E+R+P+  ++G  +LL  +    LN +Q    E + 
Sbjct: 216 LKRAKDAAEAADRAKSVFLANMSHEIRTPMNGVLGMANLLLAT---PLNPEQHDLAETLC 272

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL ++NDILD + ++AG M+L      L D L       A      ++ + V  D
Sbjct: 273 QSGESLLTIINDILDFSKIEAGRMELEAIDFDLADNLELALDLHAEAAARKHLELVVNID 332

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSS 729
             +   V  D  RL QI   ++ NA+ F+ KG  V+      N        F+V + G  
Sbjct: 333 PAVPRHVRGDPGRLRQILLNLVGNAIKFTEKGEVVVKVTVDHNWPNRVLLRFAVTDTGIG 392

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           IPE + + +F  FV       RR  G GLGL I +    L  G + + S  +EG T
Sbjct: 393 IPEWVQEKLFQPFVQADTSTTRRFGGSGLGLVICKRLAELMSGSIGVESKPNEGST 448


>gi|167902548|ref|ZP_02489753.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia pseudomallei NCTC 13177]
          Length = 1082

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + +LL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIAELLDRLALSHAPLATQQGLKFYMVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWRAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVTLP 713


>gi|153813961|ref|ZP_01966629.1| hypothetical protein RUMTOR_00168 [Ruminococcus torques ATCC 27756]
 gi|317501489|ref|ZP_07959687.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088039|ref|ZP_08336960.1| hypothetical protein HMPREF1025_00543 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848357|gb|EDK25275.1| hypothetical protein RUMTOR_00168 [Ruminococcus torques ATCC 27756]
 gi|316897118|gb|EFV19191.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408995|gb|EGG88454.1| hypothetical protein HMPREF1025_00543 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 444

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 125/240 (52%), Gaps = 10/240 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEY 612
           A+  +N        ++  F  +VS+EL++PLT+I G+ +++K    G +  +  S + E 
Sbjct: 206 AMDRQNREKEAVANMRKEFSANVSHELKTPLTSISGYAEIMKN---GLVRPEDISGFSER 262

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L+ L+ DI+ L+ +D   ++L    + L +L  E+   ++ +  + NIRI++ 
Sbjct: 263 IYKEARRLITLIEDIIKLSKLDEESVELEKEDVDLYELTREIVSRLSPQAAQKNIRIEL- 321

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
             G+   +   RQ L ++   +  NA+ ++ +   V + A    NG  I SV + G  IP
Sbjct: 322 -SGESVHYHGIRQILDEMVYNVCENAVKYNYENGKVSVWAGNTLNGPKI-SVSDTGIGIP 379

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++  + +F RF  V  +H  +R G GLGLSIV+    LHG  VS+ S +   T I+ + P
Sbjct: 380 KEHQERIFERFYRVDKSHSKERGGTGLGLSIVKHGALLHGAKVSVESEEGRGTKISMQFP 439


>gi|53719262|ref|YP_108248.1| putative two-component regulatory system sensor kinase protein
           [Burkholderia pseudomallei K96243]
 gi|126440276|ref|YP_001059056.1| Hpt sensor hybrid histidine kinase [Burkholderia pseudomallei 668]
 gi|126454519|ref|YP_001066342.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 1106a]
 gi|167815625|ref|ZP_02447305.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 91]
 gi|167824034|ref|ZP_02455505.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 9]
 gi|167845580|ref|ZP_02471088.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei B7210]
 gi|167910797|ref|ZP_02497888.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei 112]
 gi|217421671|ref|ZP_03453175.1| sensor histidine kinase/response regulator MrgS [Burkholderia
           pseudomallei 576]
 gi|226197467|ref|ZP_03793044.1| putative sensor histidine kinase/response regulator MrgS
           [Burkholderia pseudomallei Pakistan 9]
 gi|237812400|ref|YP_002896851.1| MrgS [Burkholderia pseudomallei MSHR346]
 gi|242317159|ref|ZP_04816175.1| putative sensor histidine kinase/response regulator MrgS
           [Burkholderia pseudomallei 1106b]
 gi|254188916|ref|ZP_04895427.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|52209676|emb|CAH35633.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia pseudomallei K96243]
 gi|126219769|gb|ABN83275.1| Hpt sensor hybrid histidine kinase [Burkholderia pseudomallei 668]
 gi|126228161|gb|ABN91701.1| putative sensor histidine kinase/response regulator MrgS
           [Burkholderia pseudomallei 1106a]
 gi|157936595|gb|EDO92265.1| sensor histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|217395413|gb|EEC35431.1| sensor histidine kinase/response regulator MrgS [Burkholderia
           pseudomallei 576]
 gi|225930846|gb|EEH26856.1| putative sensor histidine kinase/response regulator MrgS
           [Burkholderia pseudomallei Pakistan 9]
 gi|237505911|gb|ACQ98229.1| MrgS [Burkholderia pseudomallei MSHR346]
 gi|242140398|gb|EES26800.1| putative sensor histidine kinase/response regulator MrgS
           [Burkholderia pseudomallei 1106b]
          Length = 1082

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + +LL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIAELLDRLALSHAPLATQQGLKFYMVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWRAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVTLP 713


>gi|256839211|ref|ZP_05544721.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256740130|gb|EEU53454.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 656

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L    E   +AD +K++F+ ++++E+R+PL  I+GF+ ++   +      + S  
Sbjct: 424 RAGIRLKIAKEKAEEADHLKSAFLANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSN- 482

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +++ +L  L+ D+LD++ +++  +    +   +  L+ ++   I  +M E N+ +
Sbjct: 483 --IIQSNNELLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPE-NVEL 539

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + + D +  +   DR RL Q+ + +L+NA+  + KG  +         +  F V + G  
Sbjct: 540 R-LDDCQPFTLYTDRSRLTQVLTNLLTNAIKHTKKG-YICFGYDVTEQEIRFYVTDTGEG 597

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D  + VF+RFV         GVGLGL+I ++ +   GG + ++S     +T +   P
Sbjct: 598 IPDDQLERVFDRFVKLTQWTN--GVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFP 655


>gi|238921932|ref|YP_002935446.1| two-component system, OmpR family, sensor histidine kinase KdpD
           [Eubacterium eligens ATCC 27750]
 gi|238873604|gb|ACR73312.1| two-component system, OmpR family, sensor histidine kinase KdpD
           [Eubacterium eligens ATCC 27750]
          Length = 362

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 131/242 (54%), Gaps = 7/242 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A +MLT   +   ++    ++E+     K  +++ + ++ +S++LR+PLT+I G  + L 
Sbjct: 102 AASMLTG-TLASKLKKHVRMSEQAAYREKTLQLRANLLRTISHDLRTPLTSISGNANNLM 160

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +     N  + Q    I   S  L++LV +IL +   + G + LN S  ++++++ E  
Sbjct: 161 YNYDKLDNDTREQIFTDIYDDSEWLISLVENILFVTRFEDGTVTLNMSDQLIDEVIAEAL 220

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           + I  K  E+ I +     GK    V  D + ++Q+   I+ NA+ ++ +GS + +KA +
Sbjct: 221 KHINRKSCEHKIHVDC---GKELLLVRMDVRLIIQVIINIVDNAIKYTQEGSDIYIKARK 277

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +    I S+++NG  IP+DM ++VF+ F +  N     RR +GLGLS+ ++ IN HG  +
Sbjct: 278 EGRYVIISIEDNGEGIPDDMKENVFDTFFTCNNEIADNRRSLGLGLSLCKTIINAHGSEL 337

Query: 773 SI 774
            +
Sbjct: 338 EL 339


>gi|149202987|ref|ZP_01879958.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
 gi|149143533|gb|EDM31569.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
          Length = 720

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 11/242 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+TD++R E+ L E       A+  K+SF+ ++S+E+R+P+  ++G  +LL  ++   L
Sbjct: 190 LNITDTIRYEKELKEARRRAEAANRAKSSFLANMSHEIRTPMNGVVGMAELLMETE---L 246

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q  +   I  S   LL ++ND+LD + ++A  + L+     L   ++E+   +    
Sbjct: 247 TEEQRLFTSTIKNSGEALLVIINDVLDYSKIEAEKLILHAEPFDLERCIHELVTLMQVNA 306

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDN 716
            +  + + V  D  L + FV D  R+ QI + +L NA+ F+  G      T +       
Sbjct: 307 RDKGLDVLVDYDLFLPTQFVGDPGRIRQIMTNLLGNAVKFTENGHVLVRVTGVYSDTEGR 366

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V++ G  IP D    +F  F  V +    +  G GLGL+I +  I + GG + +
Sbjct: 367 ASIHVTVEDTGIGIPPDKIDHIFGEFNQVDDERNRKFEGTGLGLAISQKLIRMMGGKIWV 426

Query: 775 SS 776
            S
Sbjct: 427 ES 428


>gi|83647612|ref|YP_436047.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635655|gb|ABC31622.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 652

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 120/231 (51%), Gaps = 12/231 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER +  K EA  ++   K+ F+ H+S+ELR+PLT I+G+T+LL      S+    S +++
Sbjct: 139 ERLVRLKAEAENRS---KSEFLAHLSHELRTPLTAILGYTELLIAQN--SIPDNLS-HLQ 192

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  +   LL+L+NDILD++ ++AG +++ +  + L   L ++   +A    + N++++ 
Sbjct: 193 IVQRNGQHLLSLLNDILDISKIEAGKLEMEFVRVNLQTYLADLYSLMAVSARDKNLQLRF 252

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNG 727
           I+D  L   +  D  RL Q+   ++ NA+ F+ +G  ++   +    +     F V + G
Sbjct: 253 IADMPLPENIETDPIRLRQVLLNLIGNAIKFTEQGEIIVRVQMIKEEEQEKIQFKVIDTG 312

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             I +   K +F  F        RR  G GLGL+I        GG + +SS
Sbjct: 313 PGINQTDQKRLFQPFTQAYANSIRRSEGAGLGLAISRQLAQRLGGDIRLSS 363


>gi|213424962|ref|ZP_03357712.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 731

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 118/219 (53%), Gaps = 16/219 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+E K++F+  +S+E+R+PL  I+G   LL    L + N +    ++ I+ S   LL +
Sbjct: 260 KANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMA-NYRDD--LQAINDSGESLLAI 316

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLG 678
           +NDILD + ++ G      + + +++   E +Q + + +H  + R++V      S+    
Sbjct: 317 LNDILDYSAIEVG-----GTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 371

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   D +R+ QI   +LSNA  F+ +GS ++L+   D+  +   V++ G  IPE    ++
Sbjct: 372 TLQGDPRRIRQIVINLLSNAAKFTDRGS-IVLRTFCDDQSWFIEVEDTGCGIPEAKLTAI 430

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F  FV     G R G GLGL+I  S     GG ++++S+
Sbjct: 431 FKPFVQAT--GCRGGTGLGLAISASLAEAMGGTLTVTST 467


>gi|167588377|ref|ZP_02380765.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia ubonensis Bu]
          Length = 1082

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELVAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + DLL+ +  S A    +  ++  ++ +  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIADLLDRLALSHAPLATQQGLKFYMVFERSLPARLYFDPVRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWHAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVALP 713


>gi|159897122|ref|YP_001543369.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890161|gb|ABX03241.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 397

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 141/308 (45%), Gaps = 20/308 (6%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +PG   R +AA C  Y ++         ++ S+      + GT E     VLE +  P  
Sbjct: 89  TPGDRERALAAGCDGYISKPIDPRALPDLVASY------IGGTRE-----VLETAEAPSV 137

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +     V   +S    R L   N  L + D+ KN F+  +S+ELR+PLT I G+ DLL
Sbjct: 138 MREYSQQLVGRLES--HVRELETANNRLTRLDQAKNDFLATISHELRTPLTVIHGYIDLL 195

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               LG ++  Q + +E +  +ST LL  +ND++ L  V +   +++++   L  L+  +
Sbjct: 196 NMQALGPVSDGQREALELMKRNSTRLLRHINDLIYLQQVRSN--QMDFAQADLRGLVQSI 253

Query: 655 KQSIATKMHENN---IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
              +     E N   +R   +S  +    +  D   +      +L NA  ++++G  + +
Sbjct: 254 CNDMQPTFLEKNQTLVRNIYVSGIQTPLMIHMDVHGVDNAVRHLLENATQYTAQGGVIQV 313

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
              +D+     S+++NG  IPED  + +F  FV  +       G GLGL I +     H 
Sbjct: 314 SVYQDDQLVRVSIRDNGVGIPEDDFERIFEPFVRLDDTLASIGGAGLGLVIAKHVAEAHN 373

Query: 770 GHVSISSS 777
           G VS+ S+
Sbjct: 374 GTVSLEST 381


>gi|32477877|ref|NP_870871.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448434|emb|CAD77949.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 697

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 120/240 (50%), Gaps = 7/240 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++TD    E++L +  +A   A+  +  F+ ++S+E+R+P+  I+G  D+L+     
Sbjct: 299 TMQDITDRKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDHLRD 358

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             N    Q V+ I  +   LL ++NDILDL+ +DAG +++    +  + ++ EV+  +  
Sbjct: 359 PDNL---QVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDV 415

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +  E  + +++  DG + + +  D  R+ QI   ++ NA+ F+ +G   + ++    N  
Sbjct: 416 RAAEKKLPLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDEGVVRLTVRFDEANSC 475

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V + G  I  D    +F+ FV   +   R   G GLGL+I     +   G V + S
Sbjct: 476 LQFHVIDTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVES 535


>gi|300854623|ref|YP_003779607.1| sensor protein VanS [Clostridium ljungdahlii DSM 13528]
 gi|300434738|gb|ADK14505.1| sensor protein VanS [Clostridium ljungdahlii DSM 13528]
          Length = 376

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 124/240 (51%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ +A   A++ KN  V ++++++++PLT++IG+  LL  +    L  K ++YV    
Sbjct: 142 LEKQKKAALNAEQRKNDLVVYLAHDIKTPLTSVIGYLSLLDEAPDMPLKQK-AKYVGVTL 200

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRIKVI 672
             +  L  L+N+  ++   +   + LN   I L  +L ++       +   E  + + V 
Sbjct: 201 EKAYRLEQLINEFFEITRFNLQTIVLNKEKINLLFMLQQMADEFYPMLTPQEKQVSVNVP 260

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  L     D  +L ++F+ IL NA+ +S + S + + A + + + I +  N G+ IP+
Sbjct: 261 DDLTL---CGDADKLARVFNNILKNAIAYSYENSIINISAKQQDKNTIITFTNQGNPIPK 317

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  +++F +F  + +A      G GLGL+I +  +  H G +S+ S+ E  TT   ++PS
Sbjct: 318 EKLETIFEKFYRLDSARSTNTGGAGLGLAIAQEIVTAHNGTISVESNSEN-TTFTVKLPS 376


>gi|295097349|emb|CBK86439.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 919

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L   S+   LN  Q  ++  I  S+  LL 
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSE---LNPTQRDHLHTIERSANNLLT 343

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++ND+LD + ++AG + L      L   L++V   +A   H+  + + + I +    + +
Sbjct: 344 IINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVI 403

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCKS 737
            D  RL Q+ + ++ NA+ F+  G+  IL  K A  N      V  ++ G  IPE     
Sbjct: 404 GDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTGIGIPERDQTR 463

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 464 LFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHS 504


>gi|284045834|ref|YP_003396174.1| PAS/PAC sensor hybrid histidine kinase [Conexibacter woesei DSM
           14684]
 gi|283950055|gb|ADB52799.1| PAS/PAC sensor hybrid histidine kinase [Conexibacter woesei DSM
           14684]
          Length = 498

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 5/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAE    E   A  +A + K+  +  VS+ELR+PL +I+G++ LLK+    + +S + + 
Sbjct: 115 RAEDEALEAWRAAERASDTKSHLIAQVSHELRAPLQSILGYSQLLKSL---THDSDEVRI 171

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I+ +   LL+L ND+LD     A    ++   I    L+NEV + I     +  + +
Sbjct: 172 SESIANAGEHLLSLANDLLDTMRPGAPASSVSGDAIDPCQLVNEVIEMIRPLAAQRMVSL 231

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
                  LG +V  DR+RL Q+   ++SNA+ +      VI++  R  G  + F V N+G
Sbjct: 232 GRDVHAGLGLYVRGDRRRLKQVLINLMSNAVRYGVAHGDVIVRLERVPGSRLRFVVVNDG 291

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +SI  +  + +F  F          G GLGL++  SF+    G + I  S    T     
Sbjct: 292 ASIRPEHAERLFAPFDRLGQNVSAEGSGLGLALSRSFMEAMDGTIGIQESSAAGTAFYLE 351

Query: 788 IP 789
           +P
Sbjct: 352 LP 353


>gi|218282497|ref|ZP_03488753.1| hypothetical protein EUBIFOR_01335 [Eubacterium biforme DSM 3989]
 gi|218216552|gb|EEC90090.1| hypothetical protein EUBIFOR_01335 [Eubacterium biforme DSM 3989]
          Length = 673

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 133/251 (52%), Gaps = 11/251 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +  E AL ++     KA+E K+ F+ ++S+++R+P+  I+G++ L+K       N K   
Sbjct: 278 LEQEEALRQEKIKAEKANEAKSIFLFNMSHDIRTPMNAIVGYSQLMKKE---LTNPKLVH 334

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E I  SS +LL+++N++LD+A V++G M+L+ +  V+ ++   V  + A +    NI 
Sbjct: 335 YQEMIEQSSKLLLSIINNLLDMARVESGKMELDENYEVIGNISQLVCSAFAAEASRKNIE 394

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIF---S 722
           + +I + +    + D  ++ +I S ++SNA+ ++S G  V +       D   ++     
Sbjct: 395 LNIIVNVEHKHIIVDSTKMQEILSNLISNAIKYTSAGGKVTIDTKELPYDKEGYVLIQTK 454

Query: 723 VKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  + E+   S+F  F    N    +  G GLG++IV++F++L  G + + S    
Sbjct: 455 VTDTGIGMSEEFLPSLFELFTRERNTTLSKIPGTGLGMAIVKNFVDLMNGSIEVESELGK 514

Query: 781 VTTINCRIPSK 791
            +T    IP K
Sbjct: 515 GSTFTITIPHK 525


>gi|212633456|ref|YP_002309981.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1203

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 167/354 (47%), Gaps = 24/354 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDG 496
            +D + +G+  +  D    + NPA+ S+   + N   P   + I  +     R   E   
Sbjct: 557 AMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKSNEF-PALVSTIDELIHPDDRIRVEEHR 615

Query: 497 WDLFAAIITSFDDERKSLQGTLE---LLSDS-VLEYSIIPLPNAQTML-TFVNVTDSVRA 551
            +     I ++D E + L  + E   LLS   V+E++  P    + M+ T  ++T   R 
Sbjct: 616 NEYLNNPIGTYDVEFRMLGKSGEYHWLLSRGRVVEFT--PTNQPKRMVGTHKDITRHKRN 673

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E A+ E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  SL  +Q  Y+E
Sbjct: 674 EVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRTSLTLQQKDYLE 730

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S+  LL ++NDILD + ++AG ++L      L+ +L+      A K  E  + + +
Sbjct: 731 KADFSAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLL 790

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724
            +    G  +  D  RL Q+   +LSNA+ F+  G   I     D G+        F V+
Sbjct: 791 YAPVTAGLILEGDPLRLGQVLINMLSNAVKFTKSGE--IELGCEDVGERDHRITLKFWVR 848

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  I ++    +F+ F        R+  G GLGLSI +  +++ GG + + S
Sbjct: 849 DTGIGISKEQQAILFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVES 902


>gi|229917891|ref|YP_002886537.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469320|gb|ACQ71092.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 432

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 114/230 (49%), Gaps = 6/230 (2%)

Query: 564 KADEIKNSFVQHV-SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + +E KN  +  V ++E ++P+ +I+G+  LLK    G  + KQ +Y + I      L  
Sbjct: 207 ETNETKNEELASVMAHEFKTPVASILGYATLLKR---GGTSEKQIEYADKIEREGKRLSR 263

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L  D+L LA +D  I+ L+ + + L++ + E   S+ ++M    +++ +  D  +     
Sbjct: 264 LSQDVLRLAKLDHTIVGLHATELSLSEQIRETILSLDSEMTRKRMKLDLTMDEVV--MKG 321

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   L Q+++ +L NA++++ + ST+ L    D       +++ G  +  +     F RF
Sbjct: 322 DASLLQQVWTNLLQNAVEYAYEESTLHLLVKEDATHITCEIRDEGEGMTPEQVDRAFERF 381

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                   R G GLGL+I    + LHGG +++SS  +  TT     P ++
Sbjct: 382 YQADTSRHRNGSGLGLAIARQIVQLHGGEITLSSEKQIGTTAKVVFPKED 431


>gi|78221271|ref|YP_383018.1| diguanylate cyclase [Geobacter metallireducens GS-15]
 gi|78192526|gb|ABB30293.1| diguanylate cyclase (GGDEF domain) [Geobacter metallireducens
           GS-15]
          Length = 580

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 9/225 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           NE L  A ++K+ F+ H+S E + PL  I+ F   L+   +G +N +Q   ++ I     
Sbjct: 31  NERLFMATQVKSEFLSHMSREFQRPLDRIVDFASCLRDGAMGEVNPEQRSGLDAIVIRGM 90

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677
            L  ++  +L+L + D G+         + D L  V + +  +  +  + I     DG  
Sbjct: 91  RLQRMLQRVLELCSSDLGMAVFLPKEFPVEDALERVVKRLRERAEKQGVAIDAGCVDG-- 148

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFIFSVKNNGSSIPE 732
           G+ +AD  +   I  ++ +NA+ FS +GS + ++       R+      +V + G  I E
Sbjct: 149 GTLLADEGKFSFIIEELATNALKFSPRGSRITVRLRNVTGGREERFLEVAVSDQGPGIRE 208

Query: 733 DMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +    +F  F + +        +GLGL++V+ F++LHGG +S+ S
Sbjct: 209 EELGQIFKSFEMGSGAIASPGSLGLGLALVKHFVDLHGGRISVES 253


>gi|327312949|ref|YP_004328386.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Prevotella denticola F0289]
 gi|326946295|gb|AEA22180.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola F0289]
          Length = 896

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 119/235 (50%), Gaps = 6/235 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V A R    +     +A   K  F  ++S+ELR+PLT I    + +      +L+ +Q  
Sbjct: 371 VYAYRTTVMRRHIEEEATTAKLQFFTNISHELRTPLTLIADPVEYIIHDP--NLSPQQRN 428

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ +  +  +L  LV++ILD   +  G M+L+ S   L++ + +     AT   + +I 
Sbjct: 429 MLQIVQRNVAVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHIT 488

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +++     L    ADR +L +I   +LSNAM ++ +G  +   A+ +       V +NG 
Sbjct: 489 LQLSVPSAL-PMRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADKVKIMVSDNGC 547

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
            I ++    VF+RF    + G   G G+GL++V++F +LH G V++ S + EG T
Sbjct: 548 GIAQNDLPYVFDRFYQAGNAGH--GTGIGLALVKAFADLHHGEVTVESKEGEGCT 600


>gi|254499073|ref|ZP_05111765.1| transmission sensor LetS [Legionella drancourtii LLAP12]
 gi|254351700|gb|EET10543.1| transmission sensor LetS [Legionella drancourtii LLAP12]
          Length = 876

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 114/216 (52%), Gaps = 12/216 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IGFT++L  SKL  L   Q  YV+ I  S+  LL ++NDIL
Sbjct: 262 KSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---QLDYVKTIKTSAQDLLGIINDIL 318

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + +DAG + L+   + + + ++EV    A   H+  I +  I+D  +   V  D  R+
Sbjct: 319 DFSKIDAGKLHLDCIPLNIRNCIDEVLTLAAPNAHKKGIDLIPITDINVPKTVLGDSFRI 378

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI-PEDMCK--SVFN 740
            Q  S +++NA+ F+  G  ++        D       ++ + G  I PED  K  + FN
Sbjct: 379 KQFISNLVTNAIKFTDHGYVLVRTKVEQETDKDYTLCITISDTGLGISPEDQNKLFTAFN 438

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  ++  R +  G GLGL I +       G +S++S
Sbjct: 439 QADTSITR-RYGGSGLGLVICKKLCEAMSGRLSMTS 473


>gi|242240530|ref|YP_002988711.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
 gi|242132587|gb|ACS86889.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 1374

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 41/287 (14%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           ++T+  DE+  L G L + +D                     +T   +A+ AL +     
Sbjct: 605 VVTAMRDEQDQLLGYLGVATD---------------------ITRQRQAQDALEKAKRQA 643

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A+E K  F+ ++S+E+R+P+  ++G   LL  +   +L  +Q  +      ++T LL 
Sbjct: 644 DEANEAKTMFLANMSHEIRTPMNAVLGMLQLLLRN---NLTPRQHAFASKAHIAATSLLG 700

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-----DGKL 677
           L+NDILD + +DAG ++L+          N V Q +A  M   N+R K I      D +L
Sbjct: 701 LLNDILDYSKIDAGKLELDPQPFD----FNAVMQHLAI-MFSGNLRAKSIELLFDLDPQL 755

Query: 678 GSF-VADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPE 732
             + + D  RL Q+   +LSNA+ F+  G     TV+L           SV ++G  I  
Sbjct: 756 SPYMIGDELRLQQVLINLLSNAIKFTDHGDVIVKTVLLAGDATTQQMRISVTDSGIGISP 815

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +    +F  F+       RR  G GLGL I +  +    G + + S+
Sbjct: 816 EQQTRIFGEFIQAEASTTRRYGGTGLGLVICKRLVEKMAGVLEVDSA 862


>gi|238925291|ref|YP_002938808.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656]
 gi|238876967|gb|ACR76674.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656]
          Length = 440

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+  ++E +  A + +  F  +VS+EL++PLT I G+ +L++   +     +Q  +   I
Sbjct: 208 AIRIQHEGVLAAAKSRQDFTANVSHELKTPLTAISGYAELIENGMVEK--EQQIHFATEI 265

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  LL+L+NDI+ L+ +D+   +  +  + L  L+ +  +++     +  + +    
Sbjct: 266 RRNAQRLLSLINDIIKLSELDSSEAQQGFEQLDLYGLVKDCIENLQVNAEQRKVALNF-- 323

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           DG       +RQ L ++   +  NA+ ++++G TV +   +  G  + +V++NG  IP+D
Sbjct: 324 DGTDCMVRGNRQLLTELVENLCQNAIRYNNEGGTVNVTVHKLGGKTVLTVEDNGIGIPKD 383

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             + VF RF  V  +   +  G GLGL+IV+  + LH   +++ S     TTI
Sbjct: 384 QQERVFERFYRVDKSRSKETGGTGLGLAIVKHIVELHDAGLTLDSEVGRGTTI 436


>gi|228933849|ref|ZP_04096694.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946197|ref|ZP_04108530.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229091550|ref|ZP_04222758.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|229122098|ref|ZP_04251314.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228661441|gb|EEL17065.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228691774|gb|EEL45523.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228813488|gb|EEM59776.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825805|gb|EEM71593.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 312

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A  +N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGNDGDYIDITAYENNNMIAIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 302


>gi|148555601|ref|YP_001263183.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148500791|gb|ABQ69045.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 624

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 133/263 (50%), Gaps = 26/263 (9%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+ V  ERAL    +  R A+  +   ++ VS+E+R+P+  ++   D L+   L    
Sbjct: 96  DVTEEVETERALIAARDQARAAERTRAEMLEVVSHEIRTPMHGLLAAIDALRREPLD--G 153

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIAT 660
           ++Q+Q      A++T+ + +++D+LD + +++G   I  +N+      DL++ V+ +I  
Sbjct: 154 ARQAQLASLNQAATTV-MGVIDDMLDYSRIESGRVVIESINF------DLVSVVRTTI-- 204

Query: 661 KMHENNIRIKVIS------DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA 713
            +H      K +       DG       D  RL Q+ S ++SNA+ F+  GS  I L   
Sbjct: 205 DLHNGAAGAKGLGLDAFGLDGDPRPVRGDPARLQQLLSNLISNAIKFTETGSVSISLSPT 264

Query: 714 RDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRG-VGLGLSIVESFINLH 768
           R +GD   ++  V+++G  I ++    +F+R    +A R + +G  GLGL+I +      
Sbjct: 265 RSDGDTDWWMIIVRDSGRGIGQEALGRIFSRGEQVDAARMRLQGRTGLGLAISQQLAEAM 324

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG ++ SS     TT +  +P K
Sbjct: 325 GGSIAASSDPGKGTTFSVELPFK 347


>gi|95931145|ref|ZP_01313869.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132792|gb|EAT14467.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 798

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 126/244 (51%), Gaps = 10/244 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +A ++A   K+ F+ ++S+E+R+P+  ++G  + L +     L+ + ++ V+ I 
Sbjct: 286 LDDAKKAAQEASAAKSRFLANMSHEIRTPMIGVLGMAEQLMSR---DLDDQDAELVKTIY 342

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  ++ND+LD++ ++AG ++L+       + L++  + +A    +  + +  ++ 
Sbjct: 343 SSGESLQAILNDLLDISKIEAGKLELDLHQFTPIETLDQAVELLADNAFKKGLELTTVTH 402

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729
             + S    D  RL QI   +LSNA+ F+  G  V+    L     +G+ I SVK++G  
Sbjct: 403 TAVPSTLTGDAGRLRQIILNLLSNAIKFTGDGHIVVDMNWLPTNTTSGNLIVSVKDSGIG 462

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +    ++F  F        R+  G GLGL+IV+  + L  G +S+  +++  +     
Sbjct: 463 LDDAAKNNIFTAFTQADSSTSRKYGGTGLGLTIVKQLVGLMDGDISVRDNEDHGSIFTVT 522

Query: 788 IPSK 791
           IP K
Sbjct: 523 IPFK 526


>gi|319938298|ref|ZP_08012695.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319806591|gb|EFW03249.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 464

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 130/268 (48%), Gaps = 24/268 (8%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +  + +    +  R  R+  +  + L K +E +  F+  VS+E ++PLT I GF  +L
Sbjct: 192 NYRVRVNYTGNDEIARLNRSFNQMAQQLAKQEETRQQFISDVSHEFQTPLTAIQGFATIL 251

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K  +L  +  ++ +Y + I   S  L  L  ++L L  +D   +KL  S   L + L+ V
Sbjct: 252 KNEELPLV--QRQKYADIILFHSKRLSTLSKNMLQLTILDGEDVKLETSEFSLIEQLSRV 309

Query: 655 KQS-----------IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            ++           I  ++ +N+IRI+           AD  RL Q++  +++NA+ +++
Sbjct: 310 IETQDNLALSKNIEIEFQLPKNDIRIE-----------ADESRLEQVWINLVNNAIKYTN 358

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   V +   + + +   ++++ G  + ++    +F RF          G GLGLSIV+ 
Sbjct: 359 ENGVVTISVKKSSKEVEVTIEDTGVGMSKEAISHIFERFYRQDKSRSIEGNGLGLSIVKR 418

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            I+LH G + + S ++G +    R+P +
Sbjct: 419 IIDLHRGTIDVKSREDGGSKFIIRLPQE 446


>gi|313622400|gb|EFR92864.1| two-component sensor histidine kinase [Listeria innocua FSL J1-023]
          Length = 591

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 8/235 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E NI++ V        
Sbjct: 416 LHRLIMDILALSRIEQNPVTENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTNPPI 475

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            +  DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      V
Sbjct: 476 IIETDRDKLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAKDIDRV 535

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 536 FERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGQIEVESQEEVGSTFRVTLPKK 590


>gi|227524258|ref|ZP_03954307.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
 gi|227088489|gb|EEI23801.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
          Length = 498

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 128/250 (51%), Gaps = 7/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +TD      +L + N+ +++ +E +  F+   ++E+R+PLT I G  + +K   +     
Sbjct: 232 ITDFNHMTESLEKANQEIQRQEERRQEFLADAAHEMRTPLTTISGILEGIKYDVIPQ--E 289

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ + ++ +S  +  L+ LVN+ LD   + +  ++L         +L+ + + + +K  E
Sbjct: 290 QRGKSIDLMSNETQRLIRLVNENLDYEKIRSNSIRLEKRHFNATKVLSSIVEQLGSKASE 349

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           +  R ++ +   L  + AD  R +QI   I +NA+ F+  G T+ L   R   + I  +K
Sbjct: 350 SKDRFEIQAPDDLPIY-ADYDRFVQIVFNITNNAIQFTDSG-TITLIGERGYNETIIRIK 407

Query: 725 NNGSSIPEDMCKSVFNRFV-SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  + ++  K++F R+  ++A R  R+    GLGL+IV   +  HGG +S++S     
Sbjct: 408 DTGIGMTKEQQKNIFERYYKADASRRARKYGESGLGLAIVHQLVQQHGGKISVTSKPHKG 467

Query: 782 TTINCRIPSK 791
           TT    IP +
Sbjct: 468 TTFTVIIPDQ 477


>gi|188579430|ref|YP_001922875.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
 gi|179342928|gb|ACB78340.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
          Length = 1048

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 18/256 (7%)

Query: 544 NVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKL 599
            V+ ++R  RA  E   + EAL + D  K  F  +VS+E R+PLT ++G   + L+   +
Sbjct: 312 QVSTALRNARAYEEERRRAEALAELDRAKTRFFSNVSHEFRTPLTLMLGPLEEALRDPGI 371

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              + K+   +E    ++  LL LVN +LD + V+AG ++  ++   L  L  ++  +  
Sbjct: 372 APGSRKE---LEVAHRNALRLLRLVNTLLDFSRVEAGRVEATFAPADLAALTADLASTFR 428

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           + +    + ++V       +   DR    ++   +LSNA  F+  GS + ++      D 
Sbjct: 429 SAVERGGLALRVDCLPLPETVFVDRDMWEKVVLNLLSNAFKFTFHGS-IDVRLGPGPADV 487

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR----RGVGLGLSIVESFINLHGGHVS 773
             +V + G  IP +    VF+RF    HR  G R    +G G+GL++V   ++LHGG V 
Sbjct: 488 CLTVADTGVGIPAEALPHVFDRF----HRIEGTRSRSHKGSGIGLALVRDLVSLHGGDVE 543

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    TT    +P
Sbjct: 544 VRSTLGQGTTFTVTLP 559


>gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gi|300074593|gb|ADJ63992.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 11/237 (4%)

Query: 553 RALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R L  +  A R+AD +   K+ F+  +S+ELR+PL  I+G+T  L      S   +  + 
Sbjct: 31  RVLETQRAARRQADSVTRLKDEFLATLSHELRTPLNAIVGWTQYLLNDH--SDADRLVKG 88

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  ++ +   +V D+LD++ + AG ++L    + L  +  E   ++        I +
Sbjct: 89  LQVIERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRPAAEARQIEL 148

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              + G+ G  + D  RL Q+   +L NA+ F+ +   V L   + +      V +NG  
Sbjct: 149 HP-ALGQGGVILGDPARLQQVVWNLLMNAIKFTPRQGRVSLSLRQHDDTVALEVSDNGRG 207

Query: 730 IPEDMCKSVFNRF----VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           I  +   SVF+RF    VS    G    G+GLGL+I    + LHGG +  +S+  G+
Sbjct: 208 IKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGM 264


>gi|148927534|ref|ZP_01811018.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7
           genomosp. GTL1]
 gi|147887117|gb|EDK72601.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7
           genomosp. GTL1]
          Length = 571

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 12/244 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKL 599
           T +++T   +AE  L    E   +    K+ F+  +S+E+R+PL  +IG +  LL  + L
Sbjct: 176 TIIDITAKKKAELELIAAKEEALQLSRAKDMFMGVMSHEIRTPLNAVIGMSHILLNDNPL 235

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            S    Q + +  ++ S+  L+ L+ND+LD   ++ G ++L  + + + D++  +  S+ 
Sbjct: 236 ES----QKENLSILNFSAENLMTLINDVLDFTKIETGNVELEIARLDIRDMIQSIIGSMK 291

Query: 660 TKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714
            K +E  I + K I +      + DR RL+QI   ++SN++ F+S+G   I    ++  +
Sbjct: 292 YKANEKGIYLTKSIDEAVPDIVMGDRARLVQILLNLVSNSVKFTSEGGVNIDLKVIEQTK 351

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D     F V + G  I E+   ++F  F        R   G GLGL+I +  I LH   +
Sbjct: 352 DTVRIRFGVSDTGIGIAENKLNTIFESFKQAEADTTRHYGGTGLGLAISKRLIQLHDSRI 411

Query: 773 SISS 776
           ++ S
Sbjct: 412 NVDS 415


>gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1643

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 110/499 (22%), Positives = 198/499 (39%), Gaps = 73/499 (14%)

Query: 312  LHNLTVAIAIFDQNRYLQFHN----------RSFVELWEIDLAFLATNPSNDELLEFLRS 361
            L  + +A+  F    +L+F++            F  L   D+   +  P   E LE +R 
Sbjct: 682  LSPVGIAMNDFQTGEFLEFNDAINEPAGYTREEFGRLSYWDVTPESYMPQEQEQLESMRR 741

Query: 362  ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-TIW-MFENL 419
              +              +  ++    HKD    P    LH   T+ P G   IW + +++
Sbjct: 742  TGR--------------YGPFEKEYIHKDGHRYPV--LLHGFRTTTPEGREVIWSIIQDI 785

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLS----NPAFRSLWKTEEN-- 472
            T     E       +         S GVAV+ P DG         NPA   + +      
Sbjct: 786  TETKAAEAALQATKERFEGIFQKTSSGVAVYRPVDGGRDFEFLEFNPASERINQVSREAV 845

Query: 473  ------RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                   L PG     +     R         L    +T + DER S             
Sbjct: 846  IGGKLTELFPGVVEMGLLGALQRVAGTGHPEHL---PVTDYHDERIS----------GWR 892

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            E  I  L + + +  + ++T+       + +  E   +A   K+ F+ ++S+E+R+PL  
Sbjct: 893  ENYIFRLSSGEVVAVYDDLTE-------IKQAQEQAEQASRAKSEFLANMSHEIRTPLNA 945

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            +IG + LL  +   SL+ +Q  ++  + +SS +LL ++NDILD + +++G ++L+  T  
Sbjct: 946  VIGLSQLLLET---SLDKRQQDHLNKVLSSSRMLLGIINDILDFSKIESGQLELDTHTFD 1002

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
            L+++++ +        H   + +      ++    V D  R+ Q+ + +LSNA  F+ +G
Sbjct: 1003 LHEVVDHLAALFGEVGHRKQLELVYSLPPQIPCVLVGDSLRITQVLTNLLSNATKFTPEG 1062

Query: 706  STV------ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
              V      +     D+    F V++ G  + E+    +F  F        RR  G GLG
Sbjct: 1063 GEVEMGIQLVEPPKADSVTLRFFVRDTGIGMSEEQLGRLFRAFTQADTSTTRRYGGSGLG 1122

Query: 758  LSIVESFINLHGGHVSISS 776
            L I    +   GG +  +S
Sbjct: 1123 LVISRRLVERMGGALEATS 1141


>gi|262169665|ref|ZP_06037356.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC27]
 gi|262021899|gb|EEY40609.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC27]
          Length = 1176

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 532 PLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+   +  LT  N +T+    E+AL + NE   +A E +N F+  VS+ELR+P+  ++G 
Sbjct: 614 PINQRKYYLTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGL 673

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLND 649
            ++L +     L + +SQ +   + SS   L L VNDILD + ++A  ++L+     L D
Sbjct: 674 MEILAS----RLKNSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLTD 729

Query: 650 LLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  + +          I   VI S   L     D  R  QI + +LSNA+ F+ +G  V
Sbjct: 730 ELGPLLRGFEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGR-V 788

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           + K           V++ G  + +   +S+F  F        RR  G GLG+SIV + I 
Sbjct: 789 VFKIDVAPEMLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIE 848

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L  G + + S  E  T I   +P
Sbjct: 849 LMNGKIEVKSEFEQGTQIQVNLP 871


>gi|332994427|gb|AEF04482.1| PAS signal transduction protein [Alteromonas sp. SN2]
          Length = 1107

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 126/249 (50%), Gaps = 14/249 (5%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           PN    + F +++     ER L    +    A++ K  F+  +S+E+R+P+  IIG T L
Sbjct: 379 PNGHVGV-FRDISGRKGLERQLQHAYKEAANANKAKGDFLATMSHEIRTPMNAIIGLTHL 437

Query: 594 -LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L+T       ++Q  Y+  +  S+T LL L+N ILD + V+A  ++L+++   L D++N
Sbjct: 438 ALETDNY----TQQQSYMTKVKGSATSLLTLINGILDFSKVEAQQIELHHADFNLADMMN 493

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++ Q    K  + ++++  + D +L + V    D  ++ Q+   +L NA+ F+  G  V 
Sbjct: 494 KLAQVFQHKARQKHLQL--LFDMRLDTDVTCNGDSDKIYQVLVNLLGNAIKFTRHG-FVK 550

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           L  +++     F V + G  I  D  + +FN FV       R   G GLGL+I +  + L
Sbjct: 551 LTVSKEKDALSFCVSDTGIGIDADNKEKLFNAFVQADASISREYGGTGLGLAISKRLVEL 610

Query: 768 HGGHVSISS 776
             G +  +S
Sbjct: 611 MHGELEFTS 619


>gi|310820985|ref|YP_003953343.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394057|gb|ADO71516.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 518

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 121/245 (49%), Gaps = 4/245 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           DS R  + L      L+  ++ +   + +VS++L++PLT I  +  L+   KLG L   Q
Sbjct: 129 DSARRNKDLQTAIAGLKSLEQNREELLGNVSHDLKNPLTTIKAYLTLVGREKLGPLTDGQ 188

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+    +S  +L +VND+L ++ + +G M+L      +  +  EV +++A     + 
Sbjct: 189 RRAVQICERNSDRMLRMVNDLLLMSRLQSGKMQLTQRAFGIKAVAEEVLRALAALAEHSQ 248

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +R+ V    ++  FV  DR+R+ +    ++ N +    +G TV ++ + D    + SVK+
Sbjct: 249 VRLHVPPCPEV--FVRGDRERISEAIHNLVENGIHQCEEGGTVEVRVSIDEQLALLSVKD 306

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVG-LGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +G  + ++  + +F+ F        R   G LGL +V   + LHGG V  SS     +T 
Sbjct: 307 SGPGLSQEDLEHIFDPFYRTTPGTPRPSGGRLGLPLVAKILALHGGRVDASSVPGQGSTF 366

Query: 785 NCRIP 789
              +P
Sbjct: 367 QMVLP 371


>gi|312881259|ref|ZP_07741057.1| integral membrane sensor hybrid histidine kinase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309371151|gb|EFP98605.1| integral membrane sensor hybrid histidine kinase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 924

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 124/240 (51%), Gaps = 18/240 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AERA   K+E L            ++S+ELR+PL  I G  +LL+ ++L    SKQ+   
Sbjct: 395 AERATARKSEHL-----------TNISHELRTPLNGITGSLELLRNTQL---TSKQADLR 440

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +     +  LL+++N++LD + ++A  + LN +  +L  +++E   +I + + +  I +K
Sbjct: 441 DAAYTCAKSLLSIINNLLDFSRIEADQVDLNLADNLLLKVVDESMLTIQSNIVKKPIELK 500

Query: 671 -VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +IS+G   S V D  R+ QI   +L NA  F+ KG  + L    D  + IFSV+++G  
Sbjct: 501 AIISEGVPESCVFDPIRVRQILVNLLGNAAKFTEKGH-IFLYLECDEQNLIFSVEDSGMG 559

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP D    VF  F  ++    + G GLGL I      + GG +++ +     +T   ++P
Sbjct: 560 IPSDKIDEVFEPFKQSSR--HQVGTGLGLPISRKLARIMGGSLTVKTQQNIGSTFIFKMP 617


>gi|255526818|ref|ZP_05393717.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296186417|ref|ZP_06854820.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255509497|gb|EET85838.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296048864|gb|EFG88295.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 775

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 190/412 (46%), Gaps = 56/412 (13%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW---KT 469
           I +  N+T ++  E   N L+K Q    +++   + V    G ++ S P ++ +    KT
Sbjct: 356 IIIVRNVTDKIKAEE--NRLLKTQLNFFNNMIANLKV----GFVRYSYPEYKIIEINNKT 409

Query: 470 EEN--RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSDS 524
            ++  +++PG  + N+ +          G +LF+A   + D+E   RK++Q  ++   +S
Sbjct: 410 YDDLKQINPG--VGNVLSII--------GKNLFSAFNFTKDEEAEFRKNIQNIVDKKVNS 459

Query: 525 VLEYSIIPLPNAQTMLTFV-------------------NVTDSVRAERALTEKNEALRKA 565
              Y    L   +  L  +                   ++TD V+A      KNE ++K 
Sbjct: 460 NFNYHKFYLSGEERFLKLIHQPLVGINGKAVEIIDISTDITDEVKA------KNE-MKKI 512

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTILL 621
            +I      +VS+EL++PL  I     L    LK   +     K  + V+ I  +   L 
Sbjct: 513 FQIHEELFANVSHELKTPLNVIFSTNQLMELYLKKGLVEVNKEKVFRDVDIIKQNCYRLT 572

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+N+I+DL+ +++G  KLN S   + ++   + QS++  +    I I   ++ +     
Sbjct: 573 KLINNIVDLSKIESGFFKLNLSNENIVEVTENIVQSVSEYIKRKEINIIFDTNTEEKIIA 632

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +++ +I   ++SNA+ FS+ G ++ +      G    SV++ G  I +    ++F R
Sbjct: 633 CDPEKIERIILNLISNAIKFSNSGGSIFVNVLDKGGIVEISVEDTGIGIEKKYLDNIFGR 692

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  V  +      G G+GLS+V+S + +HGG +S++S     +     +P++
Sbjct: 693 FQQVDKSLSRNVEGSGIGLSLVKSIVEMHGGKISVASEVGKGSIFKVELPAR 744


>gi|223938140|ref|ZP_03630037.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893184|gb|EEF59648.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 740

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 7/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  + E+  AL++A++   +F   VS++LR+PL  + GFTDLL+      +     Q + 
Sbjct: 476 EARVQERTTALQRANKELEAFTYTVSHDLRAPLRAVDGFTDLLQEEYGRGMPEDAQQLLA 535

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I A S  + +LV D+L+L+ +D   M      + +N L+ EV +    +    +I ++V
Sbjct: 536 SIKAGSQRMEHLVQDLLNLSRIDRQPMAPR--CVDMNRLVREVFEEQRGQQPSRDIELRV 593

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDF-IFSVKNNGSS 729
            +   L   + D   L Q+F  +LSNA+ F+      +++  ++  GD  ++ +++NG  
Sbjct: 594 DT---LPDCLGDSSLLRQVFVNLLSNAIKFTGPREKALIEVGSKTEGDENVYFIRDNGVG 650

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   +F  F       Q  G G+GLSIV+  I+ H G + + S+ +  TT    +P
Sbjct: 651 FDMKYAGKLFGAFQRLHTAEQFPGTGIGLSIVQRIIHRHSGRIWVESAVDRGTTFYFTLP 710

Query: 790 S 790
            
Sbjct: 711 P 711


>gi|118581373|ref|YP_902623.1| response regulator receiver sensor signal transduction histidine
           kinase [Pelobacter propionicus DSM 2379]
 gi|118504083|gb|ABL00566.1| response regulator receiver sensor signal transduction histidine
           kinase [Pelobacter propionicus DSM 2379]
          Length = 392

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 127/273 (46%), Gaps = 29/273 (10%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D   A RA+  + + L +    K+ FV  +S+++++P+T +IG  D+++   LG ++ +
Sbjct: 118 VDQAIANRAMRLEKQRLERE---KDDFVSMLSHDMKNPITAVIGSIDIMREGCLGPVDQE 174

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           QS+Y++    S   ++ +++++LD+   +AG M+L+       +LL+ +           
Sbjct: 175 QSEYLQSAIDSCNEVVAMIDNLLDIHRFEAGRMRLDLQPSDPRELLSAIVGRFGMLAGRE 234

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------------- 712
            + + V  D  L     DR    +  + +LSNA+ F+ +G  + L               
Sbjct: 235 GVVLNVDVDPDLPWLAVDRSAFSRTVTNLLSNALKFTLEGGMITLSCHSLDTKRAMELPV 294

Query: 713 ---ARDNGDFIF---------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLS 759
              A      +F         SV++ GS IP +  + +F RFV ++  G+ R G GLGL+
Sbjct: 295 PAYAAQQASLLFNGHGHLVRLSVRDTGSGIPPEDQERIFERFVQSSQGGKGRSGAGLGLA 354

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                +   GG + + S+ E  +     +P+ E
Sbjct: 355 YCTLTVKGFGGVIWVESTPEQGSEFIILLPALE 387


>gi|323491808|ref|ZP_08096983.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323313943|gb|EGA67032.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 850

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           AQ M    ++T  + AE+      E   ++  ++  F+  +S+ELR+PL  I+G + LLK
Sbjct: 441 AQIMAQGQDITSFIEAEKQSQAAREEAEESARMRADFLAKMSHELRTPLNGILGVSQLLK 500

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 ++ +  ++VE +  S   LL ++NDILD + ++ G   +      L +L N V+
Sbjct: 501 DKM---VDQRDIEHVEVLCNSGEHLLAVLNDILDFSKIEQGQFHIESEPFRLVELTNTVE 557

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713
           +     + + N+  +V++      +  +D+ RL QI   ++SNA+ F+  GS TV L   
Sbjct: 558 RIFKPLLDDKNVAFEVVNKIPHDKWANSDQVRLNQIIFNLVSNAVKFTHHGSVTVTLGCQ 617

Query: 714 RDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                 + +  V + G  I +     +F  FV       R   G GLGL+IV+S + + G
Sbjct: 618 HQESGCLLNLDVVDTGIGIEQHRLSHIFEPFVQAEANTTREYGGSGLGLAIVQSLVTIMG 677

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S  +  T  + RIP
Sbjct: 678 GEIKLESEVDVGTRFSVRIP 697


>gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681]
 gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681]
          Length = 1039

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 112/255 (43%), Gaps = 6/255 (2%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            V  Y ++    AQT+L       S      L+ +   L   D +K+ F+ + S+ELR+P
Sbjct: 395 GVTAYEMLIFVLAQTLLLAKRFVHSFMEVENLSRR---LLTLDGLKDEFLANTSHELRTP 451

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  II     +        N  Q   +  I+     L  L+NDILD + +  G + LN  
Sbjct: 452 LHGIINIAQSMLDRYGTQFNEPQKHNLVLIANVGRRLSYLINDILDFSNLKNGRLALNRR 511

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +   +N V + +   + +  +         L    AD  RL+QI   +L NA+ F+ 
Sbjct: 512 PANVQAAVNSVLEVLGHTVGKKKLHFVKEWPHSLPKVDADEDRLIQILYNLLGNAVKFTE 571

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           +G  VI  A     +   SVK+ GS I ++    +F  F   +NA      G GLGL IV
Sbjct: 572 EGEIVI-SAKAGTREMEISVKDTGSGIAQEHLPHIFEPFNRGANAEDEGYSGTGLGLGIV 630

Query: 762 ESFINLHGGHVSISS 776
              + LHGGH+ + S
Sbjct: 631 RRLVELHGGHIRVES 645


>gi|297192481|ref|ZP_06909879.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151374|gb|EFH31121.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 557

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 123/238 (51%), Gaps = 12/238 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L +K   +   DE    FV  +S+ELR+PLT +   T++L+  +  SL+   +  V  +
Sbjct: 287 SLEKKVADMSARDESSRRFVADMSHELRTPLTALTAVTEVLE-DEADSLDPMIAPAVNLV 345

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + +  L +LV +++++   DAG  +L   T+   D+ ++V   I  +   + + +    
Sbjct: 346 VSETRRLYDLVENLMEVTRFDAGTARLVMDTV---DVADQVTACIDARAWLDAVEL---- 398

Query: 674 DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D + G     D +RL  I + ++ NA+     GS V +     +G+ +  V+++G  IPE
Sbjct: 399 DAERGIMARLDPRRLDVILANLIGNALKHG--GSPVRVSVRPVDGELVIEVRDHGPGIPE 456

Query: 733 DMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   VF+RF  ++A R +  G GLGLSI     ++HGG ++ ++S EG       +P
Sbjct: 457 EVLPHVFDRFYKASASRPRSEGSGLGLSIAMENAHIHGGDITAANSPEGGAVFVLTLP 514


>gi|261250376|ref|ZP_05942951.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891]
 gi|260938945|gb|EEX94932.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891]
          Length = 1199

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 13/234 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           AE+    ++EA   A+  K+ F+ ++S+E+R+P+  IIG + L LKT     L   Q  Y
Sbjct: 464 AEKLAVARDEA-NSANTAKSDFLANMSHEIRTPMNAIIGMSYLALKT----DLTKAQRNY 518

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  LL L+NDILD + ++AG + +      L ++L+ +   +  +  E  + +
Sbjct: 519 IHKVKLSADSLLGLINDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASERGLEL 578

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVK 724
            + I      + V D  RL Q+   + +NA+ F+ KG   I ++ A+  GD +   FSV+
Sbjct: 579 LIHIERDVPTTLVGDPLRLGQVLINLANNAVKFTEKGEIKISVRVAKRQGDDVELEFSVE 638

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++G  + ++    +F++F        R+  G GLGL+I +    L GG + + S
Sbjct: 639 DSGIGMTKEQTDKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIRVES 692


>gi|261418255|ref|YP_003251937.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767785|ref|YP_004133286.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374712|gb|ACX77455.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112651|gb|ADU95143.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 582

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 4/230 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ ++I+  FV +VS+EL++P+T+I GF + L    +    +    ++  I   S  L 
Sbjct: 351 LKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAMKD-EAALEHFLTIILKESERLQ 409

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV ++LDL+ ++    +L    + +  ++ E       K  E  I + + S   L    
Sbjct: 410 TLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGL-VIR 468

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R+ QI   +L+NA+ ++ +   V ++A     + +  VK+ G  I E     +F R
Sbjct: 469 GDRNRMKQILLNLLANAITYTPEHGRVAVEAEETEKEVLIHVKDTGIGIEEKEIPRIFER 528

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +  H G+++++S     T      P
Sbjct: 529 FYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFP 578


>gi|83816112|ref|YP_444718.1| phosphate regulon sensor protein phoR [Salinibacter ruber DSM
           13855]
 gi|83757506|gb|ABC45619.1| phosphate regulon sensor protein phoR [Salinibacter ruber DSM
           13855]
          Length = 434

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 12/241 (4%)

Query: 542 FVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           F ++ +S+ RA     EK E L +   +++ F+ +VS+E+R+P+ +I G+ + L T  L 
Sbjct: 179 FQDLAESLNRASDTFREKIEELERMTRLQSEFIGNVSHEVRNPIFSISGYLEALGTPGLD 238

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + ++  Y E    +   L NL ND++D+A ++     +N S   L DL++EV + +  
Sbjct: 239 --DEQRKMYSEKALTNLNRLQNLFNDLIDIARLEYKEDLINRSVFDLKDLVDEVAEMLRP 296

Query: 661 KMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           K  E  + +    +  +  F   ADR R+ Q+ + ++ N + ++  GS V  +  R    
Sbjct: 297 KAEEKGLDL----EADVSRFFVHADRSRVRQVLTNLIENGIAYTGGGS-VRCRVQRRLDK 351

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V + G  I ED    +F RF  V      +  G GLGLSIV+  +  HG  + + S
Sbjct: 352 VRVEVVDTGQGIDEDHLDRIFERFYRVDPDRSRESGGTGLGLSIVKQILQAHGEDIHVES 411

Query: 777 S 777
           +
Sbjct: 412 T 412


>gi|23428538|gb|AAL11449.1| putative global response regulation sensor kinase GrrS [Serratia
           plymuthica]
          Length = 908

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+  +S+ELR+PL  +IGFT  +LKT     ++  Q+ Y++ I  S+  LL
Sbjct: 286 QEAARIKSEFLASMSHELRTPLNGVIGFTRQMLKTE----MSVTQTDYLQTIERSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L +    L + L+EV   +A   HE  + + + + +      
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+  G+  I   L+  +D+  +    + + G  I E    
Sbjct: 402 IGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGQQDHQVELEVQIHDTGIGISERQQS 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +   S
Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHS 503


>gi|322693017|gb|EFY84895.1| putative histidine kinase HHK6p [Metarhizium acridum CQMa 102]
          Length = 1372

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 124/235 (52%), Gaps = 20/235 (8%)

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +K+ F+ ++S+E+R+P+T ++G  +LL       L+ +Q  Y++ I +S+T LL ++NDI
Sbjct: 798  LKSQFLANMSHEIRTPITGVLGMAELLSHM---DLDEEQRDYLDNIQSSATSLLTVINDI 854

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-------F 680
            LD + V++G + +      L+ ++ EV + +   +   N+  +      +GS        
Sbjct: 855  LDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQ----SDIGSDIENDMVV 910

Query: 681  VADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            + D  R+ QI + +L+N++ F+++G    S        D+ +  F V++ G  I ED+ K
Sbjct: 911  IGDPGRVRQIITNLLTNSIKFTNQGYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRK 970

Query: 737  SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F  F        RR  G GLGL+I ++ ++L  G + + S+ +  T  +  IP
Sbjct: 971  RLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIP 1025


>gi|238754497|ref|ZP_04615852.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
 gi|238707326|gb|EEP99688.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
          Length = 902

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 257 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 312

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + +++      
Sbjct: 313 SIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQV 372

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           V D  RL Q+ + +L NA+ F+  G+  I  + R +          +++ G  I E    
Sbjct: 373 VGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSLRSHTRRQIKLAVEIQDTGIGISEQQQS 432

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +    G +S  S
Sbjct: 433 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHS 474


>gi|227510112|ref|ZP_03940161.1| possible histidine kinase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190491|gb|EEI70558.1| possible histidine kinase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 498

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 128/250 (51%), Gaps = 7/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +TD      +L + N+ +++ +E +  F+   ++E+R+PLT I G  + +K   +     
Sbjct: 232 ITDFNHMTESLEKANQEIQRQEERRQEFLADAAHEMRTPLTTISGILEGIKYDVIPQ--E 289

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ + ++ +S  +  L+ LVN+ LD   + +  ++L         +L+ + + + +K  E
Sbjct: 290 QRGKSIDLMSNETQRLIRLVNENLDYEKIRSNSIRLEKRHFNATKVLSSIVEQLGSKASE 349

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           +  R ++ +   L  + AD  R +QI   I +NA+ F+  G T+ L   R   + I  +K
Sbjct: 350 SKDRFEIQAPDDLPIY-ADYDRFVQIVFNITNNAIQFTDSG-TITLIGERGYNETIIRIK 407

Query: 725 NNGSSIPEDMCKSVFNRFV-SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  + ++  K++F R+  ++A R  R+    GLGL+IV   +  HGG +S++S     
Sbjct: 408 DTGIGMTKEQQKNIFERYYKADASRRARKYGESGLGLAIVHQLVQQHGGKISVASKPHKG 467

Query: 782 TTINCRIPSK 791
           TT    IP +
Sbjct: 468 TTFTVIIPDQ 477


>gi|224537524|ref|ZP_03678063.1| hypothetical protein BACCELL_02403 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520837|gb|EEF89942.1| hypothetical protein BACCELL_02403 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 357

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++++  L +  E + K+   K+ F+ ++S+E+R+PL  + GF+++L T  +     KQ  
Sbjct: 115 IQSQLKLQQAQEEVEKSTRNKSLFISNMSHEIRTPLNALSGFSEVLTTPGIDEDTRKQC- 173

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             E I  +S +L+NL+ND++D++ +D   MK +        L   + Q++   + +    
Sbjct: 174 -YEIIQLNSRLLINLLNDVVDISCLDVKNMKFDLKVCDAVPLCEGIIQTVEG-IKQTQAA 231

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   +         D  RL Q+   IL NA  F+ +GS ++     + G   FSV + G 
Sbjct: 232 LSFETTLPSLEIETDIFRLPQVLINILVNATKFTKEGSIILRLEQNEEGMAQFSVTDTGC 291

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            IP +   ++FNRF     + Q  G G+GLSI +  I+  GG++ I
Sbjct: 292 GIPLEKQPTIFNRFERVDEKSQ--GTGIGLSICQFIIDQLGGNIWI 335


>gi|160936693|ref|ZP_02084060.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440484|gb|EDP18229.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1071

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 130/262 (49%), Gaps = 22/262 (8%)

Query: 542 FVNVTDSVRA---ERALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           F+++TD       +R L E+        EA + A+  K+ F+  +S+++R+P+  I G  
Sbjct: 516 FIDITDITELRELQRKLEERTDMLNSALEAAKYANAAKSDFLSRMSHDIRTPMNVITGMA 575

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++   + +G    +    ++ I  SS  LL L+ND+LD++ ++ G   ++ + + L D L
Sbjct: 576 EI-AAAHIGD-QDRVKDCLQKIRLSSHHLLGLINDVLDMSKIENGNFSISMAPMCLPDEL 633

Query: 652 NEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            E+   +   + + N R  V  +G    +F++D  R  QI   +LSNA  F+ K   +IL
Sbjct: 634 QEIITIVLPGIRKMNQRFDVYLEGPGWENFMSDALRFRQILLNLLSNASKFTPKDGRIIL 693

Query: 711 K------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVE 762
           K       +       F+V +NG  +  +  + +F  F    ++   Q  G GLG++I +
Sbjct: 694 KIEIQETESAKKAMICFTVSDNGIGMSPEYLEQIFEPFTRERDSRIDQIEGSGLGMAITK 753

Query: 763 SFINLHGGHVSISSSDEGVTTI 784
             I+L GG +++ S   GV T+
Sbjct: 754 RLIDLLGGTITVKSQ-LGVGTV 774


>gi|150010361|ref|YP_001305104.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938785|gb|ABR45482.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 656

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 124/240 (51%), Gaps = 8/240 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L    E   +AD +K++F+ ++++E+R+PL  I+GF+ ++   +      + S  
Sbjct: 424 RAGIRLKIAKEKAEEADHLKSAFLANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNI 483

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++   +++ +L  L+ D+LD++ +++  +    +   +  L+ ++   I  +M E N+ +
Sbjct: 484 IQ---SNNELLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPE-NVEL 539

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + + D +  +   DR RL Q+ + +L+NA+  + KG  +         +  F V + G  
Sbjct: 540 R-LDDCQPFTLYTDRSRLTQVLTNLLTNAIKHTKKG-YICFGYDVTEQEIRFYVTDTGEG 597

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D  + VF+RFV         GVGLGL+I ++ +   GG + ++S     +T +   P
Sbjct: 598 IPDDQLERVFDRFVKLTQWTN--GVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFP 655


>gi|89574449|gb|ABD77437.1| MrgS [Burkholderia pseudomallei]
          Length = 1078

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL++++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLSSLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + +LL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIAELLDRLALSHAPLATQQGLKFYMVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWRAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVTLP 713


>gi|54309013|ref|YP_130033.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9]
 gi|46913445|emb|CAG20231.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9]
          Length = 693

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 114/216 (52%), Gaps = 9/216 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+PL  ++G  D L  S    L+ KQ ++V  +  S+ +LL ++
Sbjct: 327 ANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDS---GLDKKQMEWVSQMEQSAQLLLTII 383

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           NDILDL+ +++G  +L  + I + D ++ V   +  +    NI +   I +   GS + D
Sbjct: 384 NDILDLSRIESGKFELFNTDICIADSVSLVVNQLNEQAKRKNITLTTQIDESVPGSMLGD 443

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           + R+ Q+   ++ NA+ F++ GS  V +KA   N     +V + G  I      ++FN F
Sbjct: 444 KNRITQVMFNLIGNAIKFTNVGSVRVSVKAV--NNHIEIAVTDTGIGIAPYAQNTLFNPF 501

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +       RR  G GLGL+I    I    G++S+ S
Sbjct: 502 IQADGSITRRYGGTGLGLAISMHLIKKMDGNISLDS 537


>gi|294055632|ref|YP_003549290.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614965|gb|ADE55120.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 438

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 114/215 (53%), Gaps = 4/215 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+  + ++  FV +VS+ELR+PLT I GF + L           +++++E I  ++  L 
Sbjct: 187 LKSLEMVRREFVANVSHELRTPLTIIKGFAETLVEDNASLPVEARARFLEKILNNAERLH 246

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+L L+ +++   +++     L  L+ +  ++ +++++     I++  D ++G F 
Sbjct: 247 VLVEDLLTLSRLESKPDQVDPQLYSLRQLMEDTIENYSSRLNPGVQAIELKYDDRVGDFS 306

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI-FSVKNNGSSIPEDMCKSVF 739
            DR RL Q+   ++ N   ++ + + + L    D   DF+  SV+++G  IP      +F
Sbjct: 307 FDRFRLNQVVDNLIENTFRYAPEFTQLSLSVDYDEETDFVECSVQDDGPGIPAKDVPHIF 366

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            RF  V      +R G GLGLSI++  + LHGG V
Sbjct: 367 ERFYRVDKGRSRERGGTGLGLSIMKHIVQLHGGTV 401


>gi|256822064|ref|YP_003146027.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
 gi|256795603|gb|ACV26259.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
          Length = 950

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 126/235 (53%), Gaps = 16/235 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A  IK  F+ ++S+E+R+P+  +IGFT+LL  ++L   N+KQ  ++  I  S+T LL++
Sbjct: 296 EASRIKTEFLANMSHEIRTPMNGVIGFTELLLKTEL---NNKQKDFLFDIKRSATSLLSI 352

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVA 682
           ++DILD + ++AG M        L + ++++ + +    ++  I  + +I      + + 
Sbjct: 353 IDDILDYSKIEAGKMSFERYPFDLRECVDDIFRMLGPNANKKGIELVSLIYSDVPKALLG 412

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
           D  R+ QI + +++NA+ F+  GS  +                 VK++G  + ++  +++
Sbjct: 413 DPIRIKQIITNLVNNAIKFTKSGSVELYAEVESENQKGLKLKVQVKDSGIGLTQEQQRNL 472

Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI-SSSDEGVT---TINC 786
           F  F S A    +R   G GLGL I +S +   GG++ + S++ +G T   T+ C
Sbjct: 473 FKAF-SQADSSTKREFGGTGLGLVISKSLVEKMGGNIGVNSTAGDGSTFWFTLQC 526


>gi|150005758|ref|YP_001300502.1| two-component system sensor histidine kinase, FrrD [Bacteroides
           vulgatus ATCC 8482]
 gi|254882063|ref|ZP_05254773.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|294777238|ref|ZP_06742694.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|319640929|ref|ZP_07995638.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|149934182|gb|ABR40880.1| two-component system sensor histidine kinase, FrrD [Bacteroides
           vulgatus ATCC 8482]
 gi|254834856|gb|EET15165.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|294448952|gb|EFG17496.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|317387448|gb|EFV68318.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 489

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++G+LN +Q      I  +S  LL
Sbjct: 260 FKELDSAKTTFISTISHELKTPISAIMMSLQLLEDQRIGALNEEQEDLANSIKENSERLL 319

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N+  ++L++  V++G ++L        +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 320 NITGELLNMTQVESGKLQLKPKITKPIELIEYAIKANRVQAEKFNIQIEVEYPEDKIGKL 379

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   V++ A + +  FI   V++ G  I     KS+F
Sbjct: 380 FVDSEKIAWVLTNLLSNAIRYSPENGRVVIGARQTDDGFIEMFVRDFGKGIDPRYHKSIF 439

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           + +       + +G GLGLSI   F+  H G +++ S   EG T +
Sbjct: 440 DHYF-RVPGTKVQGSGLGLSISRDFVEAHNGTLTVDSKLGEGSTFV 484


>gi|119488052|ref|ZP_01621496.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119455341|gb|EAW36480.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1106

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 126/273 (46%), Gaps = 27/273 (9%)

Query: 529 SIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           S + L N +    FV ++T   RAE  L     A   A   K+ F+ ++S+ELR+PL  I
Sbjct: 592 SKLELGNKRIYTAFVRDITKRKRAEEELKRAKAAADSASRAKSEFLANMSHELRTPLNGI 651

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  +L+  K  ++  +Q + +  I    + LL L+NDILDL+ ++A  ++L+ +    
Sbjct: 652 LGYAQILQRDK--NITPQQRKGLGVIKQCGSHLLTLINDILDLSKIEAQKLELHPTDFDF 709

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
              L  V +    +  + NI     +   L  S  AD +R+ Q+   ++SNA+ F+  G 
Sbjct: 710 LTFLCGVSEICRVRAEQKNISFTYQTSQHLPKSLHADEKRVRQVLINLISNAIKFTDTGC 769

Query: 707 TVILKAARDNG----------------------DFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            +      +NG                         F V++ G  IP +  + +F  F  
Sbjct: 770 VIFTTELIENGMAKVCDVGHPDQCFTPPQCATHKIRFLVQDTGIGIPSEQIEKIFIPFEQ 829

Query: 745 NAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
              R ++  G GLGL+I +  +++ G  +++ S
Sbjct: 830 VGDRFRKAEGTGLGLAITQKIVSMMGSTLNVES 862


>gi|74318297|ref|YP_316037.1| histidine kinase [Thiobacillus denitrificans ATCC 25259]
 gi|74057792|gb|AAZ98232.1| Histidine Kinase [Thiobacillus denitrificans ATCC 25259]
          Length = 447

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 10/235 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ D+ +  F+  +S++LR+PLT I     ++  S  G  N+K S+ +  I  ++  +  
Sbjct: 179 RRVDQSRRMFLAVLSHDLRNPLTCIRMAALVISRSAEG--NAKASRLLSQIETNADAIRR 236

Query: 623 LVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           L++D++D A+   G  M L    + L  L  EV  +  T      +R    +DG L    
Sbjct: 237 LIDDLIDFASTGLGSAMPLTRGPVDLERLGREVVDASRTAHPGRTLRFH--ADGDLAGHW 294

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+ S ++ NA+   S+   V L  A +    + +V N G+ IP ++  ++F+ 
Sbjct: 295 -DAGRLRQVVSNLVGNALQHGSETGAVGLSLASEGATAVLAVHNEGAPIPSELLATIFDP 353

Query: 742 FVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            V  A     R     VGLGL IV   +  HGG V + S+ +  TT   R+P  +
Sbjct: 354 LVRYAPDAAVRRVPGSVGLGLYIVREIVVAHGGTVDVVSTAQEGTTFTARLPRAQ 408


>gi|46581671|ref|YP_012479.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46451094|gb|AAS97739.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235311|gb|ADP88165.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris
           RCH1]
          Length = 839

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 120/248 (48%), Gaps = 12/248 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VT+  R    L    +A   A++ K+ F+ H+S+ELR+PL  ++G   LL       +
Sbjct: 411 LDVTERKRVLAELRTARDAAEAANKAKSEFLAHMSHELRTPLNGVMGMLQLLDE----HV 466

Query: 603 NSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + Q + +++    SS  LL +++DILDL+ ++AG + L         +L  V  S+   
Sbjct: 467 AAPQGRAWLDVALESSRALLRILSDILDLSRIEAGRLDLMQEPFTPESVLAPVLVSLHRT 526

Query: 662 MHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF 719
           +    +RI   + D      V D  R+ Q+   +L NA  ++ +G   V ++  R NG  
Sbjct: 527 VEGRAVRIVNEMDDSMPPVLVGDPGRIRQVLLNLLGNAAKYTERGEVRVGMRVLRRNGKA 586

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +     V + G  I ++  +     F       G  RGVGLGL IV   + L GG + I 
Sbjct: 587 LRVHLHVTDTGVGIADEQLQRALEPFGRLRQGSGLPRGVGLGLPIVVRLVRLMGGTLCI- 645

Query: 776 SSDEGVTT 783
           +S++GV T
Sbjct: 646 ASEQGVGT 653


>gi|163938904|ref|YP_001643788.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
 gi|163861101|gb|ABY42160.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
          Length = 896

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 31/268 (11%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD    +  L EK   + ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  
Sbjct: 473 TDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDD 532

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +    I +S   LL L+NDILDL+ V+AG + + +    ++D+        A  MH+N
Sbjct: 533 EIELATVIHSSGKDLLALINDILDLSKVEAGKLDVIFEATNISDM--------AANMHQN 584

Query: 666 NIRIKV-------ISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------ 710
            + I         I D  +    F  D +R+ QI   +LSNA  F+ KGS  +       
Sbjct: 585 FLHIAAQKNVEFTIEDSDIIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLYFDPIET 644

Query: 711 -----KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
                +    + D+I  SVK+ G  I  +  + +F  F        R+  G GLGLSI +
Sbjct: 645 TNLSNEMQSISNDWITISVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICK 704

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
            F  L GG +++ S+    +T    IP+
Sbjct: 705 EFARLLGGWITLESNVGEGSTFTVYIPN 732


>gi|262196437|ref|YP_003267646.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262079784|gb|ACY15753.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 418

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 117/213 (54%), Gaps = 14/213 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSK--LGSLNSKQSQYVEYISASSTILLNLVND 626
           +   ++ V++E+RSPL +++  ++L +T +  L  L S   + V  +      +L L+ D
Sbjct: 198 REEMMRVVAHEMRSPLQSMLLISELCQTREDDLTLLRSMPDRVVRMVQR----ILRLIED 253

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKVISDGKLGSFVADR 684
           + DL+ +D G ++L+ S   L  L+ +  + +   TK H    RI++ +   L  +  D 
Sbjct: 254 LSDLSNIDLGTLRLDRSEFDLTPLVRDTLERVQSTTKSH----RIEMEAPKHLEVY-GDL 308

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FV 743
            R+ Q+ + +L+NA+ +S + + V+L  +R + D   +V++ G  I ED    +F+R F 
Sbjct: 309 NRIEQVVTNLLTNAVKYSPEANRVLLTVSRQDLDVRVAVRDFGIGIAEDEVPRIFDRYFR 368

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++  + +  GVGLGL I ++ I  HGG + ++S
Sbjct: 369 TDQGKDRAEGVGLGLYICKALIEAHGGEIGVTS 401


>gi|237748261|ref|ZP_04578741.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
 gi|229379623|gb|EEO29714.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
          Length = 927

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 23/275 (8%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTE---KN--EALRKADEIKNSFVQHVSYELRSPLTN 586
           P  +    +    V D  RAE+A+ E   KN   A R A++ K+ F+  +S+++R+PL  
Sbjct: 373 PYNDDTLCILLTKVLDEQRAEQAVQEQVLKNALSAARMANQAKSDFLSRMSHDIRTPLNA 432

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYV----EYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           IIG       S +  L  K+ + +      I  SS  LL+L+NDILD++ +++G M L+ 
Sbjct: 433 IIGM------STISQLKMKEPEVLADCLSKIDVSSRYLLSLINDILDMSRIESGKMALSS 486

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
                 +L+  +   +  +     +  ++     L  +   D  R+ QI   +LSNA+ F
Sbjct: 487 ERFDFVELIGSINTIVYPQAVAGKLAYQIHQHESLDRYYEGDTLRINQILMNLLSNAVKF 546

Query: 702 SSKGSTV---ILKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           + +G  +   I ++ R NG  +I F V + G  +  D  K ++  F        R   G 
Sbjct: 547 TPEGGKIDVHISESRRSNGFAYIEFRVSDTGIGMSSDFMKRLYLPFEQETDDMARNKVGS 606

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSIV S + + GG +   S     TT    IP
Sbjct: 607 GLGLSIVYSLVQIMGGTIDAKSEKNRGTTFTVVIP 641


>gi|206970803|ref|ZP_03231755.1| sensor protein VanS [Bacillus cereus AH1134]
 gi|229178309|ref|ZP_04305679.1| hypothetical protein bcere0005_16710 [Bacillus cereus 172560W]
 gi|206734439|gb|EDZ51609.1| sensor protein VanS [Bacillus cereus AH1134]
 gi|228605188|gb|EEK62639.1| hypothetical protein bcere0005_16710 [Bacillus cereus 172560W]
          Length = 291

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 128/246 (52%), Gaps = 5/246 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +
Sbjct: 41  TNVNRMAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEE 99

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L + V+D+L+   ++   ++L+   + +  L+ ++      ++ + 
Sbjct: 100 CEQYVSILKRKSYELKHQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIGFVPQLDDA 159

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+   + SD  L   V D   ++++F  I+ N++ +   G  + +  +    +    +KN
Sbjct: 160 NMSFYIKSDEVLYVEV-DVALIVRLFENIIGNSIMYGKDGKEIAIGISNKTMNVEVEIKN 218

Query: 726 NGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPE+    VF +F     +      G G+GL+I +S   LH G +++ S+D+  T 
Sbjct: 219 FGQCIPEEDLPYVFEKFYRSEKSRSSYTGGKGMGLAISKSIAELHQGDLTVRSNDKE-TV 277

Query: 784 INCRIP 789
              ++P
Sbjct: 278 FTVKLP 283


>gi|254446715|ref|ZP_05060190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256140|gb|EDY80449.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 778

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 11/238 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  + A++ K+ F+  +S+ELR+P+  I+G + LL       L+ ++  Y++ I +SS  
Sbjct: 266 EKAQSANKAKSEFLSTMSHELRTPMNAIVGMSSLLMDK---DLDDERQSYIKIIRSSSDA 322

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+ND+LD + +++G + L      L + L E    +A    +  I   V  D KL +
Sbjct: 323 LLSLINDVLDYSKIESGHLDLEDQPFNLVNCLEEAMDIVAAPRRDAPIDFIVTIDPKLPA 382

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPED 733
            V  D  RL Q+   +L NA+ F+ KG     +   +    +N     ++ + G  IP+D
Sbjct: 383 IVKGDVTRLRQVLINLLGNAVKFTQKGHVWLEAKCCVVGESENVFASIAIHDTGIGIPDD 442

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F  F        RR  G GLGL+I +      GG + + S     +T    IP
Sbjct: 443 RKHRLFQTFSQVDSSMTRRFGGTGLGLAISQRLAMAMGGIIEVESEVGSGSTFQFTIP 500


>gi|220921619|ref|YP_002496920.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219946225|gb|ACL56617.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 538

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 15/254 (5%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LP A  + +   +    R   A   + +A  +A   K++F+  VS+E+RSPL +I+G+TD
Sbjct: 116 LPAALALPSPGALQQVRRELGARIRERDAAERASAAKSAFLARVSHEIRSPLNSILGYTD 175

Query: 593 LLKTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           LL    LG  N  +++ + +  I  S + LL +V+DI+D + + AG   L      L+DL
Sbjct: 176 LL----LGEANRTAEERRKLTIIQVSGSSLLAVVDDIVDFSRITAGEAALRSEPFGLHDL 231

Query: 651 LNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++     +        + + V I+         D  R+ QI   +L+NA+ F++ GS V 
Sbjct: 232 VDTTLAMVRPAAESKGLLLSVEIAPDLPRHLRGDEDRIRQILLNLLTNAIKFTAAGS-VS 290

Query: 710 LKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
           L   R+           +VK+ G+ IP D   ++F       +AH  +  G GLGL I  
Sbjct: 291 LTLRREEVVSGRARITVAVKDTGAGIPPDRQATLFRGADPGEDAHVPRIGGSGLGLVICR 350

Query: 763 SFINLHGGHVSISS 776
             + L GG +   S
Sbjct: 351 KLVALMGGEIGFES 364


>gi|329890535|ref|ZP_08268878.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328845836|gb|EGF95400.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 250

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+ H+S+ELR+PL  ++GF+D ++    G +  + + Y   I  +   LL+L+ND+L
Sbjct: 23  KTRFLAHMSHELRTPLNAVVGFSDAMRQELFGPVPPRYADYAASIHEAGGHLLDLINDVL 82

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++A   +L+       + +      +  +  +  + +  +   +  S  ADR+ L 
Sbjct: 83  DVSRIEADRYQLSLERFDAREPVLAALALVRIQADDKGVELAAVLPPEALSVRADRRALK 142

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAH 747
           Q+   +L+NA+ F+  G TV +     +     +V + G  I  ED+ +    R    A 
Sbjct: 143 QMALNLLANAVKFTPPGGTVTVSVQAADDALEVTVADTGVGISAEDLAR--LGRPYEQAG 200

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++R  G GLGL++V +   LHGG +++ S+    T    R+P
Sbjct: 201 DAEQRAQGSGLGLALVRALAGLHGGTLALDSALGVGTAATVRLP 244


>gi|325679937|ref|ZP_08159506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324108375|gb|EGC02622.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 1233

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 119/233 (51%), Gaps = 10/233 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+R L +  ++   ADE K+SF+  +S+E+R+P+  ++G  +++        +    +Y 
Sbjct: 690 AKRQLKQSADSAIAADEAKSSFLAQMSHEIRTPINAVLGMNEMILRE---CTDDDIKEYA 746

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I ++   LL+L+N ILD + ++ G M++  +      ++N++  +++ +    ++ +K
Sbjct: 747 VNIQSAGRTLLSLINSILDFSKIEDGKMEIIPAAYGTASMINDLVTAVSARAAAKDLTLK 806

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIF--SVKN 725
           V +D  L    + D  R+ Q+ S +L+NA+ ++ KGS  +   A D    D +    V +
Sbjct: 807 VNADPALPAKLIGDDMRIKQVISNLLTNAVKYTEKGSVTLTVKAEDLTEKDMVLYVEVAD 866

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            G  I E+   ++F  F     +  R   G GLG+SIV   + + G  + + S
Sbjct: 867 TGIGIKEEDIGALFETFRRLDEKRNRSIEGTGLGMSIVTKLLEMMGSELHVES 919


>gi|254785971|ref|YP_003073400.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237685403|gb|ACR12667.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 620

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 136/248 (54%), Gaps = 12/248 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQ 606
           ++ AE A+ +++    KA  IK+ F+ ++S+ELR+PL ++IG+T  LLK   + S  + Q
Sbjct: 367 ALNAELAIAKRHA--EKALSIKSEFLANMSHELRTPLNSVIGYTVRLLK--HVNSDRAIQ 422

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I  +   LL ++NDILDL+ ++A  + L+   + LN+L  +    +     E N
Sbjct: 423 LKALEAIERNGRHLLAMINDILDLSKIEAQKLDLSIRPVDLNELCEQAVTQVGPAAEEKN 482

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK-- 724
           + +  I   +  +   D  RL QI   +LSNA+ ++++G  + ++  RD  +   S++  
Sbjct: 483 LELVFIR-SQTATVHTDFTRLSQILLNLLSNAIKYTNEGG-IKIELERDISEKYVSLRVI 540

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  I  +  K +F RF    ++ R Q  +G GLGL+IV S   L G  VS++S     
Sbjct: 541 DTGIGIEPENQKRLFLRFEQFDDSSRFQVGKGSGLGLAIVASLSKLLGVRVSVASDVGKG 600

Query: 782 TTINCRIP 789
           +T + R+P
Sbjct: 601 STFSLRVP 608


>gi|225568541|ref|ZP_03777566.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM
           15053]
 gi|225162769|gb|EEG75388.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM
           15053]
          Length = 885

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 129/258 (50%), Gaps = 11/258 (4%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y +  +   Q +  F + T+ V + +AL E   A   A+  K+ F+  +S+E+R+PL  +
Sbjct: 328 YRVEDMNAPQLITVFSDRTEEVCSRQALQEAMLAAENANAAKSEFLSRMSHEIRTPLNAV 387

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T +   S   S  ++    +  I+ SS  LL L+ND+LD++ +++  M L      +
Sbjct: 388 IGMTTIAAASV--SDPARVEDCLTKITFSSRHLLMLINDVLDMSKIESSKMALQNEPFDI 445

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +++N    ++  +    +I  +   +  GK   F+ D  RL QI   + SNA+ F+  G
Sbjct: 446 FEIVNGFVSTVYAQAKSKDIVFEETMEGFGKDTVFIGDSLRLNQILMNLSSNAVKFTPPG 505

Query: 706 STVILKAAR----DNGDFI-FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRR-GVGLGL 758
            ++ L  +R    +  D I F +K+ G  + ++    +F  F  ++A   +R  G GLG+
Sbjct: 506 GSIHLDVSRYKKGNQADVIRFVLKDTGIGMTKEAVGRIFQPFEQADASIAKRYGGTGLGM 565

Query: 759 SIVESFINLHGGHVSISS 776
           SI  + I L GG + + S
Sbjct: 566 SITRNLITLMGGQIQVES 583


>gi|325109506|ref|YP_004270574.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
 gi|324969774|gb|ADY60552.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
          Length = 566

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYIS 614
           T ++E+ R A+++K+ F+  +S+ELR+PL+NI+G++ LL    +G L+ +   + ++ I 
Sbjct: 181 TARSESER-ANQLKDEFLATLSHELRTPLSNIVGWSRLLN---MGGLDDESIREGLDTIE 236

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++  IL  ++ D+LD+A + +G ++L+  ++   + L    +++        + +    D
Sbjct: 237 SNGNILSQMITDLLDVARIASGKIRLDTVSLNPVETLEAAIRAVKPSADAKQLGVVTTVD 296

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              G    D  RL Q+F  +L+NA+ F+     + +   +       S+ + G  +  + 
Sbjct: 297 RNAGLIEGDASRLQQVFWNLLTNAIKFTPAEGQIDVVMQKVGSTIQISIADTGKGMTPET 356

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
              +F RF        R   G+GLGL+I +  ++LHGG +S  S+  G
Sbjct: 357 LNIIFERFRQADGTTTREHGGLGLGLAITKQLVDLHGGTISAESAGLG 404


>gi|307721459|ref|YP_003892599.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
 gi|306979552|gb|ADN09587.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
          Length = 764

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 9/241 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TDS+  ++ +  + EALR A + K  F+ ++S+E+R+PL  I+GF +LL       +++K
Sbjct: 136 TDSI-FQKLIDARQEALRAA-QAKEYFLSNMSHEIRTPLNAILGFVNLLMDE---DISNK 190

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y++ I  S   LL+++NDILD + + +G   +      L++ L+   +      +  
Sbjct: 191 HRNYLDIILNSGENLLSIINDILDFSKLRSGEFNIEAKVFSLHEELSHTMELFVASANSK 250

Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           +I I    D ++      D  R+ QI S  LSNA+ F+  G  + ++A+  N     SV 
Sbjct: 251 DITITSFIDPRIPKELFGDVLRIKQIVSNFLSNAIKFTPVGGVIKVEASCHNQQLTISVN 310

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGV 781
           +NG  I ++  +++F  F    ++    + G GLGL I      L  G V ++S   EG 
Sbjct: 311 DNGVGINKEDLQNIFVAFTQARSSEHDNKEGSGLGLCISHQLAELMHGKVHVNSKVGEGS 370

Query: 782 T 782
           T
Sbjct: 371 T 371


>gi|297529109|ref|YP_003670384.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252361|gb|ADI25807.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 582

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 4/230 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ ++I+  FV +VS+EL++P+T+I GF + L    +    +    ++  I   S  L 
Sbjct: 351 LKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAMKD-EAALEHFLTIILKESERLQ 409

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV ++LDL+ ++    +L    + +  ++ E       K  E  I + + S   L    
Sbjct: 410 TLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGL-VIR 468

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R+ QI   +L+NA+ ++ +   V ++A     + +  VK+ G  I E     +F R
Sbjct: 469 GDRNRMKQILLNLLANAITYTPEHGRVAVEAEEREKEVLIHVKDTGIGIEEKEIPRIFER 528

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +  H G+++++S     T      P
Sbjct: 529 FYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFP 578


>gi|284163565|ref|YP_003401844.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284013220|gb|ADB59171.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 626

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 121/250 (48%), Gaps = 6/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD    ER L E  E L +++E    F    S++L+ PL  +  +  L++     + +
Sbjct: 381 DVTDRKERERQLRELVERLEESNERLEQFAYAASHDLQEPLRMVSSYLRLIENRYGDAFD 440

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               +++E+    +  +  ++  +L+ + V+A      +  + LN +L +V + +  ++ 
Sbjct: 441 EDGEEFLEFAVEGADRMREMIQGLLEYSRVEA--EGEPFQAVDLNVVLEDVCEDLQLRVD 498

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFS 722
           ++   I   +  +L +   D  +L Q+F  +LSNA+++S +    I + A RD   +I S
Sbjct: 499 DSGAEI---TSERLPTVEGDANQLRQVFQNLLSNAIEYSGQEPPRIHVSAERDGAKWILS 555

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G  I  D    +F  F S     +  G G+GL++ E  +  HGG + + S+    +
Sbjct: 556 VRDEGIGIDPDHADRIFEVFESLHTNDEHAGTGIGLALCERIVERHGGDIWVESTPGEGS 615

Query: 783 TINCRIPSKE 792
           T +  +P  E
Sbjct: 616 TFSVTLPDPE 625


>gi|167567131|ref|ZP_02360047.1| probable two-component sensor/regulator [Burkholderia oklahomensis
           EO147]
          Length = 923

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 9/226 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E       A   K+  +  +S+ELR+PL  I+G   LL  S   +L ++Q   V  
Sbjct: 385 RELAEAKRIAESASHRKSEHIASISHELRTPLNGIVGALALLNRS---ALQAEQRDLVRV 441

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIK 670
              SS+ LL +VN++LD + ++AG ++L      L  LL++   +I  +  E   N+R  
Sbjct: 442 AQQSSSYLLGIVNNVLDFSRIEAGQLELASEETDLLALLDQAMLTIHIRAQEKSLNLRTF 501

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V +D     ++ D  R+ QI   +L NA+ F+  G  + L   R      F V++ G  I
Sbjct: 502 VAADVPRRVWL-DGLRVRQILINLLGNAVKFTEHGH-IHLTVERRADMLAFVVEDTGKGI 559

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P+D    +F  FV    R    G GLGL I     NL  G + + S
Sbjct: 560 PDDYQLDIFKPFVQV--RAHDSGNGLGLPIASRLANLMNGEILLDS 603


>gi|119962088|ref|YP_948935.1| two-component sensor histidine kinase [Arthrobacter aurescens TC1]
 gi|119948947|gb|ABM07858.1| putative two-component sensor histidine kinase domains protein
           [Arthrobacter aurescens TC1]
          Length = 547

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 9/235 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ D+ K  F+  V++ELR+PLT+I  + D+++    G +     + ++ I+ +S  L 
Sbjct: 311 LRQLDKAKTDFLATVNHELRTPLTSITAYLDMIQDGSGGPVPEGIRKMLDVIARNSDRLR 370

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+L ++  D     L+   + ++ LL  V  ++       ++ +      +     
Sbjct: 371 RLIEDMLTVSMQDGS--NLDLKPVDIDKLLQVVVATLRPLAESRHVSVSFTEATEDIEVT 428

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDF--IFSVKNNGSSIPEDMCK 736
           AD  +L Q+F+ I++NA+ F+ +G +V + +A    +NG    +  + +NG  IPE    
Sbjct: 429 ADEAKLEQVFTNIVANAIKFTPEGGSVGITSAMSATENGRLSALVRIADNGLGIPEHDLP 488

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  RF   SNA      G GLGL+I    I  H G +   S+    TT++  +P
Sbjct: 489 HILTRFYRASNATSAAVPGSGLGLAIANDIIGRHMGRMVFDSTLGSGTTVSVELP 543


>gi|15889688|ref|NP_355369.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15157594|gb|AAK88154.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 1131

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    +    + + AL +  E    A+  K+ +V  +S+ELR+PL  ++G+  +L+ 
Sbjct: 645 QNTLLLKEIAAHKKTDAALQDAKETAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILER 704

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  ++ + +   ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L++V  
Sbjct: 705 DE--TIPAPRQSAIKVIRRSADHLSGLIDGLLDISKIEAGRLQVYSNEINIKDFLDQVVD 762

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     +  +      L  +V  D +RL QI   +LSNA+ F+ +GS V    A  
Sbjct: 763 MFRPQAQAKGLEFRHERTAALPQYVRTDEKRLRQILVNLLSNAIKFTDEGS-VTFDVAYR 821

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           +    F+V + G  I E     ++  F        R   G+GLGL+I     N  GG +S
Sbjct: 822 SQVASFTVSDTGRGIAEKDLARIYEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEIS 881

Query: 774 ISSSDEGVTTINCRI 788
           +SS  +  +T   R+
Sbjct: 882 VSSEKDNGSTFRVRL 896


>gi|313673507|ref|YP_004051618.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940263|gb|ADR19455.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1101

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 118/241 (48%), Gaps = 9/241 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F + T+++   + +    E   +A++ K+ F+  +S+E+R+P+  IIG  +L+      +
Sbjct: 576 FSDRTETISNMKKMAMLKEKAEEANKAKSLFLSSMSHEIRTPINGIIGAIELIPKH---N 632

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ + S Y+  I +SS  LL L+NDILDL+ +++G +KL         +L  V+  I   
Sbjct: 633 LSDEISSYLNIIKSSSEHLLMLINDILDLSKIESGYLKLENIPFEPIKVLKRVRSIIYPT 692

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNG 717
                +   +    +      D  RL Q+   +  NA+ F+ KG       IL  +    
Sbjct: 693 TIPKGLTFSIDYPDRGICVYGDPHRLSQVLINLSGNAVKFTEKGEVEVKMEILSESETEI 752

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              FSV++ G  IPED    +F  F  + ++H  +  G GLGL I ++ + + GG + + 
Sbjct: 753 RLKFSVRDTGIGIPEDKMDKLFKPFSQIDDSHTRKFGGTGLGLVISQNLVKMFGGIIKVE 812

Query: 776 S 776
           S
Sbjct: 813 S 813


>gi|325106939|ref|YP_004268007.1| integral membrane sensor hybrid histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967207|gb|ADY57985.1| integral membrane sensor hybrid histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 508

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R + + + AL+ +DE K+ F+  +++ELR+PL  I     LL+ + +    +++S+ ++ 
Sbjct: 118 RQIRKLSCALQTSDEQKDEFLALLAHELRNPLAPIRTGLGLLQRTDV--TEAERSRVMQT 175

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      L  +V+D+LD++    G + L    + L D+++   +   + + E    I V+
Sbjct: 176 ICRQLEQLFRIVDDLLDVSRFTHGKIMLECQPMDLRDVVDTAVEQAQSDLDERQHCINVL 235

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      DR R++QI + +L+NA  ++ +   + +   R   + + +V +NG  I  
Sbjct: 236 VPSRPVPVYGDRIRIVQIVTNLLTNASKYTPRQGRIEVVVDRVENNAVLTVTDNGIGITR 295

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS--SDEG 780
           +M + +F  F     A R  R G+GLGL I + F  +HGG + + S  +D G
Sbjct: 296 EMQQHIFELFARADAAIRSDRGGLGLGLPIAKQFATMHGGTLRVESEGADRG 347


>gi|302338340|ref|YP_003803546.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301635525|gb|ADK80952.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 475

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 128/248 (51%), Gaps = 15/248 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +RA  E  E LR     +N F+ ++S+E R+P+ +I+G   L K     S +S+  +Y++
Sbjct: 135 KRAKREAEEGLRA----RNEFLANMSHEFRTPINSILGMATLAKER---SDSSEVGEYLD 187

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  S   LL++V+ +LD A +++  +KL  S + ++ ++ ++++  A ++ ++++   +
Sbjct: 188 LLIESGKGLLDMVSSVLDYAKIESDRLKLVMSNLNVSSMVKKIRERFAYQISQSDVDFSI 247

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKN 725
            ++ G       D ++  QI   ++SNA+ F+S+G   +  +A +      G  +  V +
Sbjct: 248 TVAPGVPKLLWCDEEKYYQIILNLVSNALKFTSRGEVSVTISAGEKIDQAGGSLLLKVVD 307

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +D    +F  F        R   G GLGL+IV+ F++  GG + ++S     T 
Sbjct: 308 TGVGIAKDQQDHIFRAFTQVDGSATRTFGGTGLGLTIVKQFVDQVGGSIELTSDTGKGTE 367

Query: 784 INCRIPSK 791
           +   +P +
Sbjct: 368 VVVNLPVR 375


>gi|239905957|ref|YP_002952696.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795821|dbj|BAH74810.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 597

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 111/221 (50%), Gaps = 16/221 (7%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQY-----VEYISASSTILL 621
           +K  F+  VS+E ++PLT+++GF  +++   + G L            VE +  +  I+L
Sbjct: 356 VKTDFLSLVSHEFKTPLTSMVGFAQVMRKRLERGPLAEAGHSLEIVAEVERLRHNLAIML 415

Query: 622 -------NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                   L++++L+LA +DA  + L  + + + ++++         ++   +       
Sbjct: 416 EEGRKLAGLIDNVLELAALDADDLPLVQTPLAVAEIVDRAAAPYLAAINAKGLAFVRDIP 475

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G L     DR RL+ +F ++LSNA+ F+  G        RD G  + +V++ G  IP DM
Sbjct: 476 GDLPPLRGDRDRLVFVFDQLLSNAVKFTKDGHIACRAGLRD-GMAVIAVEDTGPGIPADM 534

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            ++VF +F  + +   G+  G+G+GL+   + +  HGG ++
Sbjct: 535 GEAVFEKFFQLGDVTTGKMPGLGIGLAAARAVVKRHGGAIT 575


>gi|254518596|ref|ZP_05130652.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium sp. 7_2_43FAA]
 gi|226912345|gb|EEH97546.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium sp. 7_2_43FAA]
          Length = 508

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 154/309 (49%), Gaps = 29/309 (9%)

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           P  +I  +A   S         D  A    + DDE  +L  TL  LS +        L N
Sbjct: 211 PLININKVAKRMS-------SMDFTAKCEATSDDEIGNLATTLNFLSST--------LEN 255

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A        + D  +  + L E  E  RK +E++  FV  VS++L++P+  I G+ + LK
Sbjct: 256 A--------LDDLKQKNKKLEEDIEKERKLEEMRKDFVASVSHDLKTPIGIIEGYAEGLK 307

Query: 596 TSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               G +  K +  Y++ I   S  +  LV ++L+L+ +++G ++L      +  L+ ++
Sbjct: 308 D---GIVTGKDALIYLDTIIDESHKMNKLVTNMLELSKLESGNIELALEKFNILRLIQKL 364

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +S + +    +I++ + +D +    + D  +L Q+ + ++SN + ++  G  VI++ A 
Sbjct: 365 IKSFSLEFASKDIKLNLKTDLEYCYVIGDVFQLEQVITNLISNTLKYTPNGKEVIIEVAS 424

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +     S++N G+ IPED  ++++ +F  +  A    +   GLGL+IV+  + LH    
Sbjct: 425 TDTLINISIENKGAYIPEDEIENLYTKFYRIDKARTTSKNSNGLGLAIVKRILTLHESSY 484

Query: 773 SISSSDEGV 781
           S++++++GV
Sbjct: 485 SLNNTEDGV 493


>gi|146302442|ref|YP_001197033.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
            UW101]
 gi|146156860|gb|ABQ07714.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
            UW101]
          Length = 1350

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 130/244 (53%), Gaps = 12/244 (4%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            + ++T+    E A+  K  A   A++ K+ F+ ++S+E+R+PL  IIGFT LL  ++L  
Sbjct: 944  YFDITNKKETEDAIKAKQLA-EAANKSKSDFLANMSHEIRTPLNGIIGFTHLLMKTELEE 1002

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +   Q +Y+  I+ S+  LL ++NDILD + ++AG ++L      +  +L +V   I  +
Sbjct: 1003 I---QEKYMTTINQSAHSLLEIINDILDFSKIEAGKLELFIDLYDIKKVLGQVFDLIVFE 1059

Query: 662  MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARD 715
             ++ ++++++  D  +  ++  D  R+ QI   +LSNA+ F+++GS     +V+ K   +
Sbjct: 1060 SNQKSLQLELNVDHDVPKYIWTDIVRIKQILINLLSNAVKFTNEGSIKLNVSVLSKTKNN 1119

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 FSV + G  I E   K +F  F        R+  G GLGL+I    + L    + 
Sbjct: 1120 FCTIRFSVIDTGIGIMEKNQKKIFKAFSQADSSTTRKFGGTGLGLTISNQLLALMESRLQ 1179

Query: 774  ISSS 777
            + S+
Sbjct: 1180 LEST 1183


>gi|332184966|ref|ZP_08386715.1| HAMP domain protein [Sphingomonas sp. S17]
 gi|332014690|gb|EGI56746.1| HAMP domain protein [Sphingomonas sp. S17]
          Length = 521

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 122/242 (50%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL++ + ALR   +   +F   V++EL++PL ++    D L+T +   L   Q+Q +  
Sbjct: 278 RALSDMSLALRARIDATEAFAADVTHELKNPLASLRSAVDSLETVRTPDL---QAQLLAI 334

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L  L+ DI D + +DA + +  +  + L+ L+  + +    +  E  IR++  
Sbjct: 335 VRDDVRRLDRLITDISDASRLDAQLSRAKFDPVDLHALIQGMIEQREARGVERGIRLRFD 394

Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           S     + +A +  RL ++F  +++NA+ FS     V +  AR+  D I  V++ G  +P
Sbjct: 395 SPEPGPAIIAGEGARLERVFENLIANALSFSPDQGIVAISLAREQDDVIVRVEDEGPGVP 454

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CR 787
           E+  +++F RF  +  +     R  GLGL+I  + +  H G + + S ++ ++      R
Sbjct: 455 EEAREAIFRRFHSIRPSEESFGRHSGLGLAIARTIVEAHQGCIHVESREDRMSGARFVVR 514

Query: 788 IP 789
           +P
Sbjct: 515 LP 516


>gi|300864887|ref|ZP_07109733.1| periplasmic sensor Signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300337111|emb|CBN54883.1| periplasmic sensor Signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 470

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 119/236 (50%), Gaps = 11/236 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  D + AE  L   +E L   D  + +F+ +VS+ELR+P++N++   + L++   G+++
Sbjct: 229 NELDQLAAE--LNRMSERLASLDYERRTFLANVSHELRTPISNVLVTVEALRS---GAVD 283

Query: 604 SKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             +   ++ + +   +  L  LV D+LDL  ++AG+ +L   ++VL+ L+N    ++  +
Sbjct: 284 EPELRDRFFQNVEDETKRLSRLVRDLLDLGRLEAGVTQLEQQSLVLSSLINRAVGAVKPR 343

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           M    + + V ++D  L     D +RLLQ    +L NA+  S   S V++   ++    +
Sbjct: 344 MEARGVSVTVDVADIIL---FGDPERLLQAILNVLDNAIKHSLPDSEVMISGRKEGKQAV 400

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V++ G  I       +F +F +        G GLGL+I +  +  H G ++  S
Sbjct: 401 IKVEDQGPGISSSDLPRIFEQFYTTDPSRSGSGTGLGLAIAKRIVEAHSGSITAES 456


>gi|255012375|ref|ZP_05284501.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 656

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 124/240 (51%), Gaps = 8/240 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L    E   +AD +K++F+ ++++E+R+PL  I+GF+ ++   +      + S  
Sbjct: 424 RAGIRLKIAKEKAEEADHLKSAFLANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNI 483

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++   +++ +L  L+ D+LD++ +++  +    +   +  L+ ++   I  +M E N+ +
Sbjct: 484 IQ---SNNELLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPE-NVEL 539

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + + D +  +   DR RL Q+ + +L+NA+  + KG  +         +  F V + G  
Sbjct: 540 R-LDDCQPFTLYTDRSRLTQVLTNLLTNAIKHTKKG-YICFGYDVTEQEIRFYVTDTGEG 597

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D  + VF+RFV         GVGLGL+I ++ +   GG + ++S     +T +   P
Sbjct: 598 IPDDQLERVFDRFVKLTQWTN--GVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFP 655


>gi|253567416|ref|ZP_04844864.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251943798|gb|EES84337.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 766

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T S R  + L E N+      E +   +  ++++ ++PL +IIG+TDLL      + +
Sbjct: 247 DITRSNRYRKELEEANKRAEALLEAREKLMLAITHDFKAPLGSIIGYTDLLTGL---TTD 303

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y++ + +SS  LL LV+D+LD   +D    ++N  T     L  E++ S      
Sbjct: 304 ERQRFYLDNMKSSSQHLLKLVSDLLDFHRLDLNKAEVNRVTFNPAQLFEEIRISFKPLTD 363

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             ++ +    D +L G F++D  R+ QI + +LSNA+ F++KGS + L     +      
Sbjct: 364 AKHLTLSCSIDAELDGRFISDPLRIRQIVNNLLSNAVKFTAKGS-IALNITYHSSSVRIE 422

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           V + G  +     + +F  F          G GLGLSIV   + L  G +S+ S+
Sbjct: 423 VVDTGKGMAPGDREKIFQEFTRLPGAQGEEGFGLGLSIVHKLVTLLEGSISVQST 477


>gi|261338670|ref|ZP_05966554.1| histidine kinase sensor of two-component system [Bifidobacterium
           gallicum DSM 20093]
 gi|270276294|gb|EFA22148.1| histidine kinase sensor of two-component system [Bifidobacterium
           gallicum DSM 20093]
          Length = 367

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 13/234 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  +  + L  AD+++   V +VS+ELR+P   +     +++    G + +  +  +E I
Sbjct: 121 AFNDMADELEHADQMRRDMVANVSHELRTP---VAALQAMVENMADGVVEASPAN-LENI 176

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKV 671
              +  L NL++ +LDL+ V+AG   LN     L + +++      +A   H + I+I +
Sbjct: 177 LGQTHRLSNLISFLLDLSRVEAGAASLNVEEFNLAEFIDDTVSPLQLADASHGHTIKIAI 236

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFS-VKNNGSS 729
             D  +     D+ RL Q+F+ I++NA+  S+  ++++++A  D   D + + V N GS 
Sbjct: 237 PDDITME---GDQDRLRQLFTNIIANALKHSADNTSILVEAHVDEEHDLVVANVINYGSQ 293

Query: 730 IPEDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           IP ++   +F RFV  N+ RG +  G GLGLSI      LH G+V +   + GV
Sbjct: 294 IPSEVRNQIFRRFVKGNSGRGTESGGTGLGLSIARWAAMLHDGNVQVVDDERGV 347


>gi|171912784|ref|ZP_02928254.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 821

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 114/214 (53%), Gaps = 6/214 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+ ++S+E+R+P+  I+G++ +L  ++  +L+      V  I  S   LL+L+N
Sbjct: 363 NQAKSEFLANMSHEIRTPMNAILGYSQIL--AREPTLHPFHRDAVATILHSGDHLLHLIN 420

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVA 682
           +ILDL+ +DAG M+L+ S   L   L +++     +  E  + +++   + D  +     
Sbjct: 421 EILDLSKIDAGRMELSLSEFDLTATLRDLEGMFQQRCEEKQLGLRLELPVPDHPI-MVRG 479

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L Q+   +L+NA+ F+++G   +     D   + F V++ G+ I E++ + +F  F
Sbjct: 480 DEGKLRQVLINLLANAVKFTARGRVTLRVLPGDADVWRFEVEDTGTGISEELQERIFEPF 539

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                     G GLGL+I    + + GG +++ S
Sbjct: 540 QQGGPTTIPGGTGLGLAIARKQMEIMGGSLNVRS 573


>gi|148380483|ref|YP_001255024.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933173|ref|YP_001384707.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936407|ref|YP_001388228.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. Hall]
 gi|148289967|emb|CAL84080.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929217|gb|ABS34717.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152932321|gb|ABS37820.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 569

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF++ LK          + ++++ I+  +  L 
Sbjct: 340 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 396

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL L+ ++    +L    I LN+L+ +V   +     + NI+I ++ + K+   +
Sbjct: 397 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGE-KVPLLI 455

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            ++ +  Q+   ++ NA+ ++     V +   +D G+ +F V++ G  I E+    +F R
Sbjct: 456 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTRQDKGNIVFWVEDTGVGISEEHLDRIFER 515

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +    G + + S  +  T    +IP
Sbjct: 516 FYRVDKARSRVEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|323498035|ref|ZP_08103043.1| aerobic respiration control sensor protein ArcB [Vibrio sinaloensis
           DSM 21326]
 gi|323316911|gb|EGA69914.1| aerobic respiration control sensor protein ArcB [Vibrio sinaloensis
           DSM 21326]
          Length = 786

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 126/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++   +  +Q  +
Sbjct: 264 RDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---MTQEQRNH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  S +   + + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELYPSALNFENFVAEMESISALMASQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKN 725
            +     L S +  D  RL Q+   ++SNAM F+ +G  V+  +A   +   +    V++
Sbjct: 381 DLERLSALPSAIEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAEIEQGYANITMEVED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +G  IPE     +F  +    S        G G+GL++ +  IN+  G +++ SS+EG  
Sbjct: 441 SGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITV-SSEEGFG 499

Query: 783 ---TINCRIP 789
              T+   +P
Sbjct: 500 STFTVTIHVP 509


>gi|298374757|ref|ZP_06984715.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298269125|gb|EFI10780.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 656

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L    E   +AD +K++F+ ++++E+R+PL  I+GF+ ++   +      + S  
Sbjct: 424 RAGIRLKIAKEKAEEADHLKSAFLANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSN- 482

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +++ +L  L+ D+LD++ +++  +    +   +  L+ ++   I  +M E N+ +
Sbjct: 483 --IIQSNNELLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPE-NVEL 539

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + + D +  +   DR RL Q+ + +L+NA+  + KG  +         +  F V + G  
Sbjct: 540 R-LDDCQPFTLYTDRSRLTQVLTNLLTNAIKHTKKG-YICFGYDVTEQEIRFYVTDTGEG 597

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+D  + VF+RFV         GVGLGL+I ++ +   GG + ++S     +T +   P
Sbjct: 598 IPDDQLERVFDRFVKLTQWTN--GVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFP 655


>gi|326202265|ref|ZP_08192134.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987383|gb|EGD48210.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 607

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 116/231 (50%), Gaps = 7/231 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           +K D ++  FV +VS+ELR+P+T+I  +T+ L     G++  +++  +++  I + +  +
Sbjct: 377 QKLDSMRREFVANVSHELRTPITSIKSYTETLLE---GAMEDQETSKRFLCVIDSEADRM 433

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+L L+ +D   M      + L+ ++  + + +  +    + ++     G + + 
Sbjct: 434 TRLVKDLLQLSRLDNQQMNWKMECVSLDTIVKTIVERLQIEAQRKHQKLDSYVIGDIPAI 493

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD+ R+ Q+   ++SN++ ++S+   + +       D    V + G  IP +    VF 
Sbjct: 494 SADKDRMEQVIVNLISNSIKYTSEYGEITVYVGIIYNDIYVKVTDTGIGIPSESLPRVFE 553

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A      G GLGLSI +  +  HGG ++ISS     T +  ++P
Sbjct: 554 RFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEIGKGTEVTVKLP 604


>gi|330831032|ref|YP_004393984.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328806168|gb|AEB51367.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 770

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 12/233 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    + L KA   K +F+  +S+ELR+PL  I+G + +L  +    L+  Q Q 
Sbjct: 264 RDITERKQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDT---PLDPSQRQQ 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+DL  +D   +++  + + L   L+E++     +  +  + +
Sbjct: 321 LKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTRLDLPAFLDELETLSRIQAEQKGLYL 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFI--FSV 723
               DG +  FV AD  RL Q+   ++ NA+ F+ +G   +      A + G     F V
Sbjct: 381 HFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTVRCLSHPADEPGKLALHFEV 440

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ G  IP    + +F  +     +    G G+GL++    +   GG + + S
Sbjct: 441 EDTGIGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGRLYVDS 493


>gi|302337068|ref|YP_003802274.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634253|gb|ADK79680.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 1052

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 29/248 (11%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++ +  ER L E N+A       K+ F+ ++S+E+R+PL  ++GF DL+  +   + +
Sbjct: 707 DISERIAMERGLEEANKA-------KSMFLANMSHEIRTPLNAVLGFNDLIARN---TSD 756

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K  +Y   I  S   LL L+ DILD + V+AG ++ NY     + L+ E+      +  
Sbjct: 757 PKLKEYAAQIDLSGKNLLTLIGDILDFSKVEAGGVQFNYDFFSPHHLVREIIALFEMEAK 816

Query: 664 ENNI------RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LK 711
           +  I      R  +    KL     D  R+ QI   ++SNA+ F+ KGS  +      +K
Sbjct: 817 KRGIDLITKERTPIPKQIKL-----DEDRVRQILINLVSNALKFTEKGSVCLEIHAAYIK 871

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                 +  FSV + G  IPE     +F  F     +  R+  G GLGL+I ++      
Sbjct: 872 QKDQRCNLTFSVIDTGIGIPEKEQHVIFEAFRQQEGQSTRKYGGTGLGLAISKNLAEGME 931

Query: 770 GHVSISSS 777
           G + + S+
Sbjct: 932 GSIDVKSN 939


>gi|289665595|ref|ZP_06487176.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1364

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 123/242 (50%), Gaps = 11/242 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                + V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +
Sbjct: 675 PGAAQEMVTKIDRSARALLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSL 734

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
               + + V    +   + + D  R+ Q+   ++ NA+ F+ +G  V+      +GD   
Sbjct: 735 SAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNK 794

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    + L GG + +
Sbjct: 795 LKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV 854

Query: 775 SS 776
            S
Sbjct: 855 ES 856


>gi|289663522|ref|ZP_06485103.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 636

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+   S+ELR+PL  I+G+  +L+   +        +++++I  +   LL L+
Sbjct: 272 ANRAKTEFLSRSSHELRTPLNAILGYAQVLE---MDLPEPGHRRHLQHILGAGRHLLGLI 328

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ++LD+A ++A  + L+   I +   ++E    IA    +  I ++  S     +  AD 
Sbjct: 329 TELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKYGITLRPSSIDGPWTVRADA 388

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QRL Q+   +LSNA+ F+  G  V + A  D      +V + G+ +     + +F  F  
Sbjct: 389 QRLRQVLLNLLSNAVKFNRTGGQVQVSAQADGEQVRITVADQGAGLTPAQIERLFTPFER 448

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             A R    G GLGL++ +  I   GG + + SS +G 
Sbjct: 449 LGAERSAVEGTGLGLALSKRLIEAMGGQIGVDSSSDGA 486


>gi|322418244|ref|YP_004197467.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124631|gb|ADW12191.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 732

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 23/258 (8%)

Query: 549 VRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           ++ ++  TE   AL +A+     K+ F+ ++S+E+R+P+  +IG   LL  +    L+  
Sbjct: 192 LKVQQRTTELEHALVQAEAATAAKSVFLANMSHEIRTPMNGVIGLARLLMET---PLDKV 248

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           QS Y+E +S  +  LL ++N+ILD++ V+AG++ L      L   L+   Q    +  E 
Sbjct: 249 QSNYLESLSDCAESLLTIINEILDISKVEAGMITLEKIVFDLRRFLDRSLQPFMLRGQEK 308

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFI 720
            +++ + +   L    V D  R+ Q+   ++ NA+ F+ +G+  +  + R      GD +
Sbjct: 309 GVQVLLEASPDLPQLLVGDPVRIGQVLGNLIGNALKFTQRGTITV--SCRLIEMKEGDVL 366

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSIS 775
              +V + G  I       +F +F S A     R   G GLGLSI  S + L GG + + 
Sbjct: 367 LRLAVADTGIGIAPQALDVIFEKF-SQADSSTTRLYGGTGLGLSISRSLVELMGGALGVE 425

Query: 776 SS-DEGVT---TINCRIP 789
           S   EG     T+  R+P
Sbjct: 426 SRLGEGSVFSFTLQARLP 443


>gi|291456487|ref|ZP_06595877.1| histidine kinase sensor of two-component system [Bifidobacterium
           breve DSM 20213]
 gi|291381764|gb|EFE89282.1| histidine kinase sensor of two-component system [Bifidobacterium
           breve DSM 20213]
          Length = 357

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 13/235 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  E  E L  AD+++   + +VS+ELR+P++ +    + +       +    S  +E 
Sbjct: 116 RSFNEMAEELEHADKMRLDMIANVSHELRTPVSALQAMVENMADG----VTEPTSANLEG 171

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN     + + L+E  +   IA   H ++I+++
Sbjct: 172 ILTQTQRLSDLIAFLLDLSRMEAGAASLNIEQFNVAEFLDETVEPLEIADGGHAHDIQMR 231

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGS 728
           V  D  +     D+ RL Q+F+ I++NA+  S   +TV+++    +DNG  + +V N GS
Sbjct: 232 VSDDITME---GDQDRLRQLFTNIIANALKHSPDNTTVLVETHEDKDNGTIVTNVVNFGS 288

Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            I       +F RFV        +  G GLGLSI      LHGG V +     G 
Sbjct: 289 QIAPSDRSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGSVRVVDDTRGA 343


>gi|152992982|ref|YP_001358703.1| hypothetical protein SUN_1395 [Sulfurovum sp. NBC37-1]
 gi|151424843|dbj|BAF72346.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 645

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 19/231 (8%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F   V +++R+P+  ++GF DLLK      ++ KQ +YV+    S+ +++ L+ND+L
Sbjct: 166 KSEFFSSVIHDIRTPMNAVLGFLDLLKEE----VDPKQVEYVQSAHKSAEMVIALINDVL 221

Query: 629 DLATVDAGIMKLN-YSTIVLNDLLNEVKQSIATKMHENNI--RIKVI--SDGKLGSFVAD 683
           D   + +G +K++ Y    + +L N      A   + N +  RI  I   D  +   +  
Sbjct: 222 DFNKISSGKLKIDLYYFSPVKELEN-----TALLFYHNALSKRIDFIIYVDPNIPYLIKS 276

Query: 684 RQ-RLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFN 740
              RL QI + ++SNA+ F+ +G  V L+     D  + I +VK+ G  IPE+  KS+F+
Sbjct: 277 GPIRLKQIINNLISNAIKFTPEGGMVTLEMLYELDTDELIVNVKDTGIGIPEEAQKSIFH 336

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F   S +  G+  G GLGLSI +   +L  G +   S +   TT    IP
Sbjct: 337 PFQQASKSIAGKYGGTGLGLSISKKLADLLEGELHFDSKEGEGTTFTLTIP 387


>gi|58584388|ref|YP_197961.1| membrane associated signal transduction histidine kinase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58418704|gb|AAW70719.1| Membrane associated signal transduction histidine kinase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 475

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 5/234 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYI 613
           L +  EAL + +  K  F   V++ELR+PL  IIGF +L+K   LGS+++ Q  +YV+ I
Sbjct: 226 LQQMKEALEQENTNKLKFFASVTHELRTPLNAIIGFAELIKNETLGSMDNYQYKEYVDDI 285

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             + T LL L+ND+LD +  ++  + +      LN +++     ++ K+ E  I ++   
Sbjct: 286 YNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLNMLSPKLKETGISLEKEI 345

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIP 731
             +    +AD +R+ Q+   +LSN++ F+ K   +  ++K   +         +NG  I 
Sbjct: 346 PNRQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKENIEKNLLTIEFHDNGIGIM 405

Query: 732 EDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +     V + F   A  G R  G G+GL + +  + L GG  +I S  +  TTI
Sbjct: 406 QQDIYKVMSVF-GQADSGYRNEGTGIGLPLSKKLVELMGGTFNIKSEAKLGTTI 458


>gi|146279257|ref|YP_001169415.1| bacterioferritin [Rhodobacter sphaeroides ATCC 17025]
 gi|145557498|gb|ABP72110.1| Cache sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 696

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 119/238 (50%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + L  A+  K++F+  +S+ELR+PLT IIG+ +LL+ S+   L  ++  +V  IS
Sbjct: 452 LATMGDKLDAANRAKSNFLSAMSHELRTPLTAIIGYAELLEASEGRKLEGERMNHVRAIS 511

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-S 673
           +S   L+ LV+ +L+L+ +D   ++L+  ++ L  L+ E  +          + +++   
Sbjct: 512 SSGWSLVKLVDAVLELSRLDHKDLRLSTRSLDLAPLVREACERARPDADRMQVTLRIDEP 571

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
           D  L S + D   L +I  ++LSNA+ ++  G  V +     + D +   V++ G  I +
Sbjct: 572 DEPLPSVIGDPGMLRRILDQLLSNAVKYNVPGGRVDVGFDLASPDSVALEVRDTGLGIAQ 631

Query: 733 DMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D    VF  F    H  G   G G+G++I +    + G ++   S     +T   RIP
Sbjct: 632 DRQSDVFKAFQRLGHENGAISGAGIGMTIAQRLAEVTGCNLHFESEPGKGSTFVLRIP 689


>gi|270488524|ref|ZP_06205598.1| PAS domain S-box [Yersinia pestis KIM D27]
 gi|270337028|gb|EFA47805.1| PAS domain S-box [Yersinia pestis KIM D27]
          Length = 796

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 127/250 (50%), Gaps = 18/250 (7%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +++Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DAEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   +     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           K I + +L      +AD  RL QI   ++ NA+ F+ +G  V+      N   IF V+++
Sbjct: 379 KFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLIFEVEDS 438

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT- 782
           G  IPED    +F  +     R   R   G G+GL++ +      GG +++ S+ +GV  
Sbjct: 439 GMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST-QGVGS 497

Query: 783 --TINCRIPS 790
             T+  + P+
Sbjct: 498 CFTLTIKAPA 507


>gi|169335265|ref|ZP_02862458.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258003|gb|EDS71969.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM
           17244]
          Length = 818

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 133/255 (52%), Gaps = 19/255 (7%)

Query: 537 QTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + ++T  ++ D ++ E     AL E  E+  +A+E K+ F+  +S+++R+P+  I G T 
Sbjct: 271 KILITLRDIQDMIQKEENNKIALKEAYESAARANEAKSEFLSRMSHDIRTPMNAIFGMTS 330

Query: 593 LLKTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + K     +LN      + ++ I+ SS  LLNL+N++LD++ +++G + L    I L  L
Sbjct: 331 IAK----NNLNDPDKILECLDKITISSDHLLNLINEVLDMSKIESGKLSLTSEKINLLHL 386

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + +    I+  + + +  + + + G   S  ++D  RL Q+F  ILSN+M ++ +G  + 
Sbjct: 387 VEDAITIISPDISKKHQNLSLDTSGVTHSDVISDSLRLRQVFLNILSNSMKYTPEGGNIE 446

Query: 710 LKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           LK           G + F  K++G  + E+    +F  F    ++   +  G GLG++I 
Sbjct: 447 LKVNEVKSTLEGYGRYEFIFKDDGIGMNEEFINKIFAPFERADDSRINKVHGTGLGMAIT 506

Query: 762 ESFINLHGGHVSISS 776
           +S ++L  G + + S
Sbjct: 507 KSIVDLMSGDIVVES 521


>gi|52140650|ref|YP_086179.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51974119|gb|AAU15669.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 368

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 127/245 (51%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 124 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 183

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + ++++  
Sbjct: 184 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKQIDISELLIQLDEELYPLLEKHHLEA 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DNG+ +  V N G S
Sbjct: 242 RLNIDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNGEVVVQVINYGDS 300

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ I  H G +S + S+   T    R
Sbjct: 301 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIIEQHNGTIS-AESNVVRTMFEVR 359

Query: 788 IPSKE 792
           +P  E
Sbjct: 360 LPKDE 364


>gi|17549383|ref|NP_522723.1| two-component sensor histidine kinase transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17431636|emb|CAD18313.1| probable two-component sensor histidine kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 512

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 17/240 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEYISA 615
           E L    +++      +S+ELR+PL  + G      D ++     SL S Q++       
Sbjct: 269 ETLEANQKMRRQLTADISHELRTPLAVLRGELEALEDGVRALTPASLTSLQAEV------ 322

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---I 672
               L  L++D+ +L+  D G +  +  +I L D +    Q    ++ +  I +++    
Sbjct: 323 --GTLSKLIDDLYELSLADVGALAFHMESIDLADTVCSAAQGFTPRLMDKRIALQLDLPT 380

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +  +   D QRL Q+   +L N + ++  G T+ +   R    +   V+++   +PE
Sbjct: 381 GPSRDAAIQGDPQRLRQLMQNLLENTLRYTDAGGTLRIHVHRAGAWWCLDVQDSAPGVPE 440

Query: 733 DMCKSVFNR-FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            M   VF+R F ++  RG+ + G GLGLS+ ++ +  HGG +    S  G   I  R+P+
Sbjct: 441 AMLPRVFDRLFRADPSRGRAQGGAGLGLSLCQTIVQTHGGTIDARPSPLGGLWIAIRLPA 500


>gi|126731838|ref|ZP_01747642.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Sagittula stellata E-37]
 gi|126707665|gb|EBA06727.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Sagittula stellata E-37]
          Length = 382

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 19/237 (8%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R    ++  F+  V ++LR+P+  +     +++   L  L  +++  V  +  + T    
Sbjct: 155 RDTARLREEFIAIVGHDLRNPIAAVTSGLRMIEERDL--LPERRAMLVLEMQRALTRASQ 212

Query: 623 LVNDILDLAT--VDAGIMKLNYSTIV-----LNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++ +++D A   + AGI ++N    V       D++ E++Q +A +   ++I +      
Sbjct: 213 IITNLMDFARGRLGAGI-EMNAPAPVDLAPVFRDVIGEIEQ-VAGQPVYSSIDLPR---- 266

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
              + VAD QRL Q+ S +L NA+   +    + +  A  +G+ + SV N G+ IP D+ 
Sbjct: 267 ---ALVADPQRLGQLLSNLLGNAVTHGAPSQPITVDIAERDGELVASVTNQGAPIPPDVQ 323

Query: 736 KSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            S+F  F  N + R   +G+GLGL I       HGG + +SSS+E  TT   R+P+K
Sbjct: 324 ASLFQPFSRNESKRKSLQGLGLGLYIASQIALAHGGRLHVSSSEEAGTTFTLRMPAK 380


>gi|254224966|ref|ZP_04918581.1| sensor histidine kinase [Vibrio cholerae V51]
 gi|125622654|gb|EAZ50973.1| sensor histidine kinase [Vibrio cholerae V51]
          Length = 736

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 127/256 (49%), Gaps = 19/256 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 335 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 387

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               KQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +K   ++
Sbjct: 388 --TPKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSS 445

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              E  ++ ++   I+DG+   +  D+ RL QI   +LSNA+ F+  G   +  +    G
Sbjct: 446 LCVEKGLKFQLNSEIADGRW--YYGDKARLRQIIFNLLSNAVKFTEVGFVAVGLSEESCG 503

Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 504 DENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGSV 563

Query: 773 SISSSDEGVTTINCRI 788
            + S     +  N R+
Sbjct: 564 LVQSEVGKGSCFNVRV 579


>gi|220930752|ref|YP_002507661.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
 gi|220001080|gb|ACL77681.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
          Length = 607

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 160/367 (43%), Gaps = 51/367 (13%)

Query: 438 ETI-DHLSEGVAVFGPDGRIKLSNPAFRSL---------WKTEENRLSPGTHIRNIAATC 487
           ETI +++++GV  F   G    +NPA R L         +K    ++     I +I    
Sbjct: 274 ETILNYMADGVMAFDLKGMAIHANPAARKLLGNDAVSHPFKEFAVKVGLDVRIEDIVYFE 333

Query: 488 SRYYNESDGW--DLFAAI-ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                ESD    D++  +    F D  K  +G + +L D+                    
Sbjct: 334 ESPVRESDTIINDMYVKVYFAVFTDTNKKPEGIIVVLHDA-------------------- 373

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                      TE+    +K + ++  FV +VS+ELR+P+T+I  +T+ L    +   + 
Sbjct: 374 -----------TEQ----QKLESMRREFVANVSHELRTPITSIKSYTETLLDGAVED-HE 417

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             ++++  I + +  +  LV D+L L+ +D   M      + L+ ++  + + +  +   
Sbjct: 418 TSNRFLSVIDSEADRMTRLVKDLLQLSRLDNQQMNWKIEKVSLDAMVKTIVERLKIESQR 477

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            N +++    G +    AD+ RL Q+   ++SN++ ++++   + +   +   D    V 
Sbjct: 478 KNQKLESYVIGDIPVINADKDRLEQVVVNLISNSIKYTAEYGEITVYVGKIYNDVYMKVT 537

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  IP +    VF RF  V  A      G GLGLSI +  +  HGG ++ISS     T
Sbjct: 538 DSGIGIPGESLPRVFERFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEVGKGT 597

Query: 783 TINCRIP 789
            +  +IP
Sbjct: 598 EVVVKIP 604


>gi|34497034|ref|NP_901249.1| two-component hybrid sensor and regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|34102891|gb|AAQ59255.1| probable two-component hybrid sensor and regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 1234

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 17/230 (7%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K   L +A + K+ F+ ++S+ELR+PL +II  + ++  +  G++  +  ++ + I  S 
Sbjct: 585 KARQLDQASKYKSEFLANMSHELRTPLNSIILLSKMMVNNDDGAVKDEALKWAQVIHRSG 644

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK----VIS 673
             LL L+ND+LDL+ V+AG M ++ +T+   +L  E++      M E+  R K    V+ 
Sbjct: 645 EDLLRLINDVLDLSKVEAGRMDVHLATLNSRELCAELQ-----GMFEHLARDKGLEFVVD 699

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF----SVKNNGSS 729
           D     FV+D  +L QI   +L+NA+ F+  G  V L  +R + D       SV+++G  
Sbjct: 700 DRLQSDFVSDPDKLSQILRNLLTNAIKFTRSGG-VTLSMSR-HPDLPLPVRISVRDSGIG 757

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           IP +    +F  F        R   G GLGL+I   F  + GG + + S+
Sbjct: 758 IPAEKKSVIFEAFQQADGSTSREFGGTGLGLTISLRFAQMLGGTIELESA 807


>gi|313675709|ref|YP_004053705.1| histidine kinase [Marivirga tractuosa DSM 4126]
 gi|312942407|gb|ADR21597.1| histidine kinase [Marivirga tractuosa DSM 4126]
          Length = 605

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 120/239 (50%), Gaps = 4/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +N  L   +E KN+ V+ ++++LRSP+  I G  D+LK S   SL+ ++ + +    
Sbjct: 369 LYNRNLQLTSLNEEKNNLVKILAHDLRSPINQITGLLDILKLSH-KSLSDEEEKIIFQAK 427

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +++ ILD   ++   MK+    + + +L N V++ +     + N  I+   +
Sbjct: 428 DSAQRLNQMISKILDFDALEGNRMKVMPEKMEVKELFNTVEKELKVAADKKNTSIQYQYN 487

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                F +D   L QI   I+ NA+ FS+ GS +I++A +     +FSV + G  + +  
Sbjct: 488 VNF-RFESDHLFLTQILENIIVNAIKFSNAGSEIIVRAEKLKSKIVFSVTDQGPGLTDTD 546

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F +F  +S          GLGLSIV+ +++L  G V + S +   +T    +P K
Sbjct: 547 KSLIFKKFQKLSAQPTAGENSTGLGLSIVKKYVDLLNGEVWVESEEGRGSTFYVALPVK 605


>gi|86156838|ref|YP_463623.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773349|gb|ABC80186.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 300

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +  +++  FV  VS+ELR+PLT+I  F + L+  +L     +Q + +E ++  +  L  L
Sbjct: 67  RVAKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQD-PQRQREALEIVAEETARLSGL 125

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N +LD A +++G      S   L  +L+    +   +   + +++++    +L S +AD
Sbjct: 126 INRLLDWARMESGRRVYELSRQPLGPILDAALAAFEPQQLHHPVQLELDLPSRLPSVMAD 185

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           R  L++    +L+NA  ++     + L A         +V +NG  IP+   K VF++F 
Sbjct: 186 RSALVEAVLNLLNNAFKYTGAEKRIRLSAVASGPTVTIAVTDNGPGIPQRDQKHVFDKFY 245

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             S+  +    G GLGL++V+  +  HGG VS+ S      T    +P
Sbjct: 246 RASDPLKRTVEGTGLGLAMVKHIVIGHGGKVSVESEPGRGATFVIALP 293


>gi|89901045|ref|YP_523516.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89345782|gb|ABD69985.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 1009

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 11/246 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +VR +  L +  +A  +A   K+ F+ ++S+E+R+P+  ++G   LL  +    L+  Q 
Sbjct: 248 TVRTQE-LQQAKDAAEEATSAKSEFLANMSHEIRTPMNAVLGMLYLLLKT---DLSPTQH 303

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+     ++  LL  +NDILD++ ++AG + +      L+ +L ++  +I  +  +  I
Sbjct: 304 NYLAKAQGAAHSLLGTINDILDISKIEAGKIDIESVEFGLDAVLGQLTDAIGYQAEQKGI 363

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFS-- 722
              +  DG +  F + D  RL Q+   +  NA+ F+ +G   +  L  ++          
Sbjct: 364 EFLIRYDGSIPPFLIGDPLRLGQVLLNVCGNAVKFTEQGQVELGFLSTSQTEVGLTLQVY 423

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  I  ++  ++F +F        RR  G GLGL I +S + L GG + I  S  G
Sbjct: 424 VRDSGIGIAREVQNTLFKKFTQADQSTTRRFGGTGLGLVISKSLVELMGGRIWIEDSQPG 483

Query: 781 VTTINC 786
             T  C
Sbjct: 484 KGTTIC 489


>gi|315647521|ref|ZP_07900623.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
 gi|315276960|gb|EFU40301.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
          Length = 1015

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 128/280 (45%), Gaps = 23/280 (8%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           L + ++L++ ++     Q +L  +  +   RA   +   +E L   D++K+ F+   S+E
Sbjct: 352 LATPALLQFGVLGFVFLQALLLSMKFS---RAFSQVERLSERLLTLDKLKDEFLAKTSHE 408

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  IIG  D L     G L S     +  +  S   L +LVNDILD + +    + 
Sbjct: 409 LRTPLHGIIGLADALIDGSSGKLPSPVVDLLRLMKVSGQRLAHLVNDILDFSKLKHQEIG 468

Query: 640 LNYSTIVLN---DLLNEVKQSIATKM-----HENNIRIKVISDGKLGSFVADRQRLLQIF 691
           L   T+ L    +L  +V   +A K      H+    I V+         AD  RL QI 
Sbjct: 469 LVIVTVNLRLSVELTLQVLNPLAQKKGLLLSHQLPDDIYVM---------ADENRLQQIL 519

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749
             ++ NA+ ++  G TV + A R  G     + + G  I E     +F  F  V   HR 
Sbjct: 520 HNLIGNAIAYTENG-TVTVTARRMYGQVSVQISDTGIGIAEADQVRIFESFEQVDPLHRS 578

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           Q+ G G+GLSI +  I LH G + ++S     +T +  +P
Sbjct: 579 QQGGTGIGLSITKKLIELHDGSIGVTSRLGEGSTFSFTLP 618


>gi|238752347|ref|ZP_04613825.1| Multi-sensor hybrid histidine kinase [Yersinia rohdei ATCC 43380]
 gi|238709388|gb|EEQ01628.1| Multi-sensor hybrid histidine kinase [Yersinia rohdei ATCC 43380]
          Length = 927

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  +A  +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L S Q +  E  
Sbjct: 383 ALAKSKQAAEQANHRKSEHLTTISHEIRTPLNGALGAIELLQNT---PLTSAQQRLAETA 439

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  LL ++N++LD + +++G + L      L  LL++   +I +++    I +    
Sbjct: 440 RQCSYSLLAIINNLLDFSRIESGQLALAQERTALLPLLDQAMLTIHSQVSNKPISLSTYV 499

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             ++      D QRL QI   +L NA+ F+ +G+ + L     +    F V++ G  I  
Sbjct: 500 SAEVPLELELDSQRLKQILINLLGNAVKFTQQGN-ISLNVEHKDQQLCFMVEDTGCGIDL 558

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +++F+ F+  +  GQ  G GLGL+I ++   + GG++++ S
Sbjct: 559 QHQQTIFHPFIQTSDHGQ--GTGLGLTIADNLARMMGGNITLHS 600


>gi|170022784|ref|YP_001719289.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis YPIII]
 gi|169749318|gb|ACA66836.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
          Length = 778

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 127/250 (50%), Gaps = 18/250 (7%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +++Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DAEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   +     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           K I + +L      +AD  RL QI   ++ NA+ F+ +G  V+      N   IF V+++
Sbjct: 379 KFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLIFEVEDS 438

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT- 782
           G  IPED    +F  +     R   R   G G+GL++ +      GG +++ S+ +GV  
Sbjct: 439 GMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST-QGVGS 497

Query: 783 --TINCRIPS 790
             T+  + P+
Sbjct: 498 CFTLTIKAPA 507


>gi|168182604|ref|ZP_02617268.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|237795966|ref|YP_002863518.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182674114|gb|EDT86075.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|229263502|gb|ACQ54535.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 569

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF++ LK          + ++++ I+  +  L 
Sbjct: 340 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYV---DDKKNREKFLQIINDEADRLT 396

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL L+ ++    +L    I LN+L+ +V   +       NI+I ++ + K+   +
Sbjct: 397 RLINDILVLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAENKNIKINIVGE-KVPLLI 455

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            ++ +  Q+   ++ NA+ ++     V +   +D G+ +F V++ G  I E+    +F R
Sbjct: 456 GNKDKYNQMIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFER 515

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +    G + + S  +  T    +IP
Sbjct: 516 FYRVDKARSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|312792500|ref|YP_004025423.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179640|gb|ADQ39810.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 450

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 28/246 (11%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + +T   + L K ++++  F+ + ++ELR+PL+ I  + + +    L     K+  Y   
Sbjct: 221 KTITFMAQNLSKTEKLRRDFIANTTHELRTPLSIIKSYAEAIYDDILNKDQIKEYAYSIM 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-------MHEN 665
           I A    L NL+N+IL+L+ + +G ++LN   I L +L NE+   +          + E+
Sbjct: 281 IEADH--LNNLINEILELSKLQSGTIQLNIQPISLKNLFNEILSEVNIIKGNRKFWLFED 338

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +I  K  +DGKL         L + FS I+ NA++ ++    V +KA ++N     S+K+
Sbjct: 339 DIVTK--ADGKL---------LKRAFSNIIINAVNHTNDTGNVYIKAEKENDHIKVSIKD 387

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGV-GLGLSIVESFINLHGGHVSI-SSSDEG--- 780
           +G  I E     +FNRF S   +  ++G+ GLGLSI +  I +H G +S+ S   EG   
Sbjct: 388 DGEGIDEADLPYIFNRFYS---KSAKKGIGGLGLSIAKEIIQMHNGEISVFSKKGEGAEF 444

Query: 781 VTTINC 786
           V  + C
Sbjct: 445 VVKLKC 450


>gi|119492185|ref|ZP_01623595.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119453242|gb|EAW34408.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 598

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 125/277 (45%), Gaps = 29/277 (10%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T FD +   LQ T + L     E+                     + E AL E     + 
Sbjct: 321 TQFDQQTAQLQKTCQKLRSQTAEFQ--------------------KLEYALKEAQNTAQV 360

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL--GSLNSKQSQYVEYISASSTILLN 622
           A   K +F+ ++S+ELR+P+  IIG++DLL    L  G LN  +   V+ I      LL+
Sbjct: 361 ALGAKRTFLANISHELRTPIHAIIGYSDLLCEEVLEQGQLNCLED--VQIIRKEGYRLLH 418

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +++ ILDL  ++ G M LN       +++  V +S+ +   +N  ++K+     LG    
Sbjct: 419 VIDSILDLVRIETGQMSLNLDIFDPVNVIKGVVKSLVSIADKNRNQLKIHYGRDLGLMHT 478

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  +L +I   +L NA+ F+  G   I    R  GD+I F + + G  I  +    +F  
Sbjct: 479 DLGKLQKILHHLLENALKFTEDGQ--IQLTIRRQGDWIEFCLIDTGIGISTEHQHCLFEA 536

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F        RR  G GLGL+I      + GG +++SS
Sbjct: 537 FTQADDSLCRRHGGTGLGLTICRHLCKMMGGDITVSS 573


>gi|114570677|ref|YP_757357.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341139|gb|ABI66419.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 815

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 12/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQYVEYI 613
           L E  +    A+  K+ F+ ++S+E+R+P+  I+G   +L    L   +NSK    ++ I
Sbjct: 410 LIEARDRANAANRAKSDFLANMSHEIRTPMNGILGMARVLADKDLPDDVNSK----LDVI 465

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             S   L++L++DILDL+ ++AG ++L+ +   L  + + V+        +  + ++V +
Sbjct: 466 VRSGDTLMHLLDDILDLSKIEAGQIELDEAPFDLEIIGSRVEALYRDTADKKGLTLEVEV 525

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFI-FSVKNNGS 728
           +D    S   D  RL QI + +++NA+ F++ G   +      +G   D I   V + G 
Sbjct: 526 TDRDGVSRHGDPLRLSQIANNLVANAIKFTASGKVRMTLGPTADGPDSDMIELVVSDTGI 585

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + E  C+S+F +FV       RR  G GLGL+I +   +  GG + ++S+    TT   
Sbjct: 586 GMSEAQCQSIFEKFVQADSSTTRRFGGTGLGLAICKGLADQMGGTIDVASNPGQGTTFTV 645

Query: 787 RIP 789
           R+P
Sbjct: 646 RLP 648


>gi|22124046|ref|NP_667469.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           KIM 10]
 gi|45443540|ref|NP_995079.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597792|ref|YP_071983.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809739|ref|YP_653655.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Antiqua]
 gi|108813597|ref|YP_649364.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Nepal516]
 gi|145597658|ref|YP_001161734.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Pestoides F]
 gi|153950296|ref|YP_001399462.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997330|ref|ZP_02022430.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CA88-4125]
 gi|165928121|ref|ZP_02223953.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937545|ref|ZP_02226108.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166011304|ref|ZP_02232202.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166211955|ref|ZP_02237990.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400505|ref|ZP_02306014.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420652|ref|ZP_02312405.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426990|ref|ZP_02318743.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|186896982|ref|YP_001874094.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930567|ref|YP_002348442.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           CO92]
 gi|229837086|ref|ZP_04457251.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Pestoides A]
 gi|229839211|ref|ZP_04459370.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229899775|ref|ZP_04514916.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904091|ref|ZP_04519202.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Nepal516]
 gi|294505322|ref|YP_003569384.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Z176003]
 gi|21956791|gb|AAM83720.1|AE013612_13 aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase [Yersinia pestis KIM 10]
 gi|45438409|gb|AAS63956.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51591074|emb|CAH22738.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pseudotuberculosis IP 32953]
 gi|108777245|gb|ABG19764.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Nepal516]
 gi|108781652|gb|ABG15710.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Antiqua]
 gi|115349178|emb|CAL22143.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CO92]
 gi|145209354|gb|ABP38761.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Pestoides
           F]
 gi|149288967|gb|EDM39047.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CA88-4125]
 gi|152961791|gb|ABS49252.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 31758]
 gi|165914650|gb|EDR33264.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165919895|gb|EDR37196.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165989688|gb|EDR41989.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206701|gb|EDR51181.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166961458|gb|EDR57479.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167049873|gb|EDR61281.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054030|gb|EDR63858.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|186700008|gb|ACC90637.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678209|gb|EEO74314.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Nepal516]
 gi|229687267|gb|EEO79342.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695577|gb|EEO85624.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706029|gb|EEO92038.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Pestoides A]
 gi|262363385|gb|ACY60106.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis D106004]
 gi|262367237|gb|ACY63794.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis D182038]
 gi|294355781|gb|ADE66122.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Z176003]
 gi|320017096|gb|ADW00668.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 778

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 127/250 (50%), Gaps = 18/250 (7%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +++Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DAEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   +     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           K I + +L      +AD  RL QI   ++ NA+ F+ +G  V+      N   IF V+++
Sbjct: 379 KFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLIFEVEDS 438

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT- 782
           G  IPED    +F  +     R   R   G G+GL++ +      GG +++ S+ +GV  
Sbjct: 439 GMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST-QGVGS 497

Query: 783 --TINCRIPS 790
             T+  + P+
Sbjct: 498 CFTLTIKAPA 507


>gi|294506481|ref|YP_003570539.1| Sensor kinase [Salinibacter ruber M8]
 gi|294342809|emb|CBH23587.1| Sensor kinase [Salinibacter ruber M8]
          Length = 486

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 542 FVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           F ++ +S+ RA     EK E L +   +++ F+ +VS+E+R+P+ +I G+ + L T  L 
Sbjct: 231 FQDLAESLNRASDTFREKIEELERMTRLQSEFIGNVSHEVRNPIFSISGYLEALGTPGLD 290

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             + ++  Y E    +   L NL ND++D+A ++     +N S   L DL++EV + +  
Sbjct: 291 --DEQRKMYSEKALTNLNRLQNLFNDLIDIARLEYKEDLINRSVFDLKDLVDEVAEMLRP 348

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K  E  + ++  +D       ADR R+ Q+ + ++ N + ++  GS V  +  R      
Sbjct: 349 KAEEKGLDLE--ADVSRFFVHADRSRVRQVLTNLIENGIAYTGGGS-VRCRVQRRLDKVR 405

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             V + G  I ED    +F RF  V      +  G GLGLSIV+  +  HG  + + S+
Sbjct: 406 VEVVDTGQGIDEDHLDRIFERFYRVDPDRSRESGGTGLGLSIVKQILQAHGEDIHVEST 464


>gi|255528162|ref|ZP_05394988.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296185529|ref|ZP_06853939.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255508150|gb|EET84564.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296050363|gb|EFG89787.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 628

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 127/252 (50%), Gaps = 12/252 (4%)

Query: 537 QTMLTFV-NVTDSVRAERAL--TEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIG 589
           QT+L+ + ++T   + E+     EKN  L    R+ +++   F  ++S+EL++PL  I  
Sbjct: 330 QTILSILSDITSEKQVEKLEKDVEKNIKLLNETREFNKMITEFFSNISHELKTPLNVIFS 389

Query: 590 FTDLLK---TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
              +L        G    KQ +Y++ +  +   LL L+N++LD+   D+G +KL+     
Sbjct: 390 AVQVLNLYINKNEGENIEKQHKYLKVVKQNCYRLLKLINNLLDITRADSGFLKLHTGRYN 449

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  ++ ++  S+ + +    I +   +D +      D  ++ +I   +LSN++ F++ G 
Sbjct: 450 IVSVVEDITLSVVSYVESKGINLIFDTDVEEKVINFDADKIERIILNLLSNSIKFTNPGG 509

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
            + +  +        SVK+ G  IPED  + +F RF  V    R    G G+GL +V+SF
Sbjct: 510 KIYVNMSDIGNGVTISVKDTGVGIPEDKLQMIFERFGQVDKTLRRNSEGTGIGLCLVKSF 569

Query: 765 INLHGGHVSISS 776
           + +HGG + + S
Sbjct: 570 VEMHGGTIEVKS 581


>gi|255692709|ref|ZP_05416384.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260621544|gb|EEX44415.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 775

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 128/244 (52%), Gaps = 13/244 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +L   +++ S R  R L E N   ++A+++   +   +  ++++ ++PL +I+G+T+LL 
Sbjct: 243 ILIIRDISRSNRYRRQLEEAN---KRAEDLLVAREKLMLAITHDFKAPLGSIMGYTELL- 298

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S+L + + +Q  Y+E + +SS  LL LV+D+LD   +D    ++N  T   + L +E+ 
Sbjct: 299 -SRL-TRDERQRFYLENMKSSSEHLLKLVSDLLDFHRLDLNKAEVNRVTFNPSQLFDEIY 356

Query: 656 QSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            S         + ++  V SD   G F++D  RL QI + +LSNA+ F+ KG  + L A 
Sbjct: 357 ISFEPLTAAKGLTLQSNVASDLN-GRFISDPLRLRQIVNNLLSNAVKFTQKGK-ITLTAT 414

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            D+     ++ + G  +     + +F  F   +      G GLGLSIV+  + L  G + 
Sbjct: 415 YDSSKLTIAIADTGKGMAPSDWERIFQEFTRLSGAQGEEGFGLGLSIVKKLVTLLEGEID 474

Query: 774 ISSS 777
           + S+
Sbjct: 475 VQST 478


>gi|163813932|ref|ZP_02205326.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759]
 gi|158450802|gb|EDP27797.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759]
          Length = 726

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 20/230 (8%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R A+E K  F+ ++S+++R+P+  IIGF  LLK         K ++Y   ISAS ++
Sbjct: 335 ENARLANEAKTRFLFNMSHDIRTPMNAIIGFAQLLKDH--ADDKDKVNEYTSKISASGSV 392

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ----SIATKMHENNIRIKVISDG 675
           LL+++N +L++A +++G  +LN     L +L   +K      I+ K    +  +KV  + 
Sbjct: 393 LLSIINQVLEMARIESGEAELNEEVGNLRELTESIKAVFEPEISRKKLSCDYLVKVTEE- 451

Query: 676 KLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARDNGDFIFSVKNNGS 728
               FV+ D  ++ +I   I+ N++ ++  G  +      I K  + +  + F+V + G 
Sbjct: 452 ----FVSYDETKVREILLNIIGNSVKYTPDGGNISVRVEQISKGDQGSASYRFTVADTGI 507

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + E+    +F  F       + R  G GLGL IV+S +++ GG + + S
Sbjct: 508 GMSEEYLPHIFEEFTRERTSTETRVEGTGLGLPIVKSLVDMMGGSIDVQS 557


>gi|159899621|ref|YP_001545868.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159892660|gb|ABX05740.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1211

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 143/308 (46%), Gaps = 27/308 (8%)

Query: 487  CSRYYNESDGW-DLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNA--QTMLT 541
            C+++    + W +L  AI           +G LEL  L    LE++ +P+ +A  Q+   
Sbjct: 902  CAQWNKSEEAWSELTLAIYKVSRGRLAEARGQLELGGLRSQWLEWTTLPVQSAANQSPHP 961

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             + V   +  E           +A+ +++     + ++LR PL++++   D+L    +G 
Sbjct: 962  IIIVLRDITTEI----------EAENLRHDLTYMMIHDLRGPLSSVMTSLDMLAKKMVGD 1011

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+  Q + V+    SS  LL++VN ++D++ ++AG M +   T+ ++D++  V Q+    
Sbjct: 1012 LSEGQDKIVKIALRSSARLLDMVNLLMDISKLEAGQMPITPITVAVDDVVRSVMQNYEPL 1071

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------- 714
            ++E  + + +           D Q L ++   +L NA+ FS   ST+ + A +       
Sbjct: 1072 LNERKVHVALNIAENTPKASVDIQTLERVVQNLLDNAIKFSPALSTITISANKVQANQLP 1131

Query: 715  ---DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
                 G +I   V++ G  IP    + VF +F      G  +G GLGL+     +  HGG
Sbjct: 1132 SDHPTGQWILLGVRDAGPGIPAQYRERVFEKFAQVKQTG-IKGTGLGLTYCRLAVETHGG 1190

Query: 771  HVSISSSD 778
             + +++ D
Sbjct: 1191 RIWVANDD 1198


>gi|325927769|ref|ZP_08188997.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
 gi|325541970|gb|EGD13484.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
          Length = 754

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 79  EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSVDQRDMLQ 135

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 136 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLRLSL 195

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 196 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 255

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 256 GIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 315

Query: 785 NCRIP 789
              IP
Sbjct: 316 WFEIP 320


>gi|295699239|ref|YP_003607132.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295438452|gb|ADG17621.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 979

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 123/258 (47%), Gaps = 10/258 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + +F +VT     ER L E   A   A++ K++F+  +S+E+R+PL  I+G  +LL  S 
Sbjct: 464 LCSFSDVTTLKNTERKLDEARAAADAANQAKSAFLAMMSHEIRTPLNAILGNLELLGRSP 523

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L  L   Q + V  +++SST LL ++NDILD + V++G M L   +  L  ++ EV    
Sbjct: 524 LSPL---QEERVGVVTSSSTALLGIINDILDFSKVESGQMTLESISFDLAQVIREVAAMF 580

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
                   +    + D  L   ++ D  R+ QI   ++SNA+ F++ G  ++    +D  
Sbjct: 581 EPVAQAKGLEFDCVIDDALAPHYLGDPTRIRQIVINLVSNAIKFTATGDVLLEVYLKDDT 640

Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             +   +  V + G  +     +S+F+ F        RR  G GLGL++      L  G 
Sbjct: 641 AEDSPIVIGVSDTGIGMTPQQQESLFHAFTQADSSIARRYGGTGLGLALCLRLTELMHGT 700

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     +T    +P
Sbjct: 701 IWVKSELHAGSTFVVTLP 718


>gi|116873948|ref|YP_850729.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742826|emb|CAK21950.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 459

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 12/233 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620
           L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  +S  +  L
Sbjct: 232 LEKSETARQEFVANVSHELQSPLTSMQGFARLLSS---GTLTDKEQAEYLTVLSEETARL 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679
            +L   +L LA++D          + L +   ++ Q       E  + I + ++D    +
Sbjct: 289 SSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSWREKELTINLELAD---VN 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE-DMCKSV 738
           +  D + L Q++S +L+NA+ F+ +   + ++      +    V++NG  I + DM K +
Sbjct: 346 YTGDAELLYQVWSNLLTNAIKFTPQDGNIQVRLYEKATNVFVEVQDNGVGISKTDMAK-I 404

Query: 739 FNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF  SN  R +  G  GLGLSI +  I LH G + + S+ E  TT   ++P
Sbjct: 405 FERFYKSNQSRTREEGSSGLGLSICQKIIALHHGEIIVKSTPEKGTTFTVKLP 457


>gi|281208514|gb|EFA82690.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1105

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 12/229 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  E+  KA ++K+ F+ ++S+ELR+P   I+G T LL  S    L   Q    E I  S
Sbjct: 536 QAEESAIKATKLKSQFIANISHELRTPCHGILGMTQLLLDS---GLTPNQRDSAETIKRS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKVIS 673
              L+NL+NDILD + ++AG + L      L  ++ EV   +  +A K   + I I    
Sbjct: 593 IDGLINLINDILDFSKIEAGKLTLEIVEFELISIVEEVLNLQGELANKKGIDLIFIIGRQ 652

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSS 729
                    D + + Q+   ++ NA+ F+  G  V+ +    ++GD +   FSVK+ G  
Sbjct: 653 SPVPPMLYGDSRFIRQVLINLVHNALKFTESGHVVLEISTEYESGDQVSLRFSVKDTGIG 712

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP+ + + +F  F  V  +   +  G GLGLSI    + L GG++S  S
Sbjct: 713 IPDSVSEQLFQPFSQVDGSSSRKYGGTGLGLSICRDLVGLMGGNISYES 761


>gi|254562560|ref|YP_003069655.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           extorquens DM4]
 gi|254269838|emb|CAX25816.1| putative integral membrane sensor hybrid histidine kinase
           [Methylobacterium extorquens DM4]
          Length = 1059

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 6/225 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 582 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 639

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     +R +    
Sbjct: 640 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLRFRFTRP 699

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+ +G  V L+        +F++++ G  IPE 
Sbjct: 700 EILPAVVATDEKRLRQILLNLLSNAIKFTPEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 758

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               +F  F   +    R   G GLGL+I      + GG +++ S
Sbjct: 759 DLGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVES 803


>gi|116051045|ref|YP_790128.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586266|gb|ABJ12281.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 741

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 10/245 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M  ++++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+    
Sbjct: 218 MNGWIDITERERLARQLREAMRQAGEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRL 277

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 + S  V Y +A S  L  L+ DILD+A +++G + L    + L  ++  V++  
Sbjct: 278 APEQRERASLEVAYEAAGSLQL--LIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMF 335

Query: 659 ATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--D 715
                +  +R+ V  D   G  V  D  R  Q+ S ++SNA+ F+ +G   I    R  D
Sbjct: 336 EGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERGQVTIRLQERSLD 395

Query: 716 NGDFIFSVKNNGSSI---PEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGH 771
            G  I  V    S I   P D  + +F  F+  A  R  + G GLGL+I    ++L GG 
Sbjct: 396 EGRAIVRVDVEDSGIGIAPADQAR-LFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGD 454

Query: 772 VSISS 776
           V + S
Sbjct: 455 VEMHS 459


>gi|73666846|ref|YP_302862.1| sensor histidine kinase [Ehrlichia canis str. Jake]
 gi|72393987|gb|AAZ68264.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Ehrlichia canis str. Jake]
          Length = 470

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 129/246 (52%), Gaps = 9/246 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
           A   L E  E   + +  K+ F+ +VS+ELR+PL +IIGF++++K+  +G++ N    +Y
Sbjct: 217 ANLKLKEAKEVAEQENISKSQFLANVSHELRTPLNSIIGFSEMMKSESMGAIDNVHYKEY 276

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S   LL+L+NDILD + V+A  + + +    L+ +++     +  +  +  +++
Sbjct: 277 INDIHNSGVHLLSLINDILDFSKVEANKLVVEFVKFDLSKIISSCFNMMVPRAEQAKVKL 336

Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK--NN 726
            KV+   K+   VAD +R+ Q+   +LSNA+ F+ +   V L    +  + +  ++  +N
Sbjct: 337 EKVLPSNKV-IMVADPKRMKQVIINLLSNAIKFTPENGVVKLVVEYNIEEKLIDIEVIDN 395

Query: 727 GSSIP-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I  +D+ K  S+F + V + H  +  G GLGL + +  + L  G   I S     T 
Sbjct: 396 GIGIAQQDLYKVMSIFGQ-VDSRHARKYEGTGLGLPLSKKLVELMDGVFKIKSEPNLGTI 454

Query: 784 INCRIP 789
           +    P
Sbjct: 455 VTLTFP 460


>gi|150392090|ref|YP_001322139.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951952|gb|ABR50480.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 790

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 127/245 (51%), Gaps = 12/245 (4%)

Query: 544 NVTDSVRAE---RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LK 595
           +++D  RAE   + + +K +    +++ D +K  F  ++S+ELR+PL  I+G   L  L 
Sbjct: 497 DISDRKRAEILEKHMAQKQQLIHEMQECDRLKTEFFSNISHELRTPLNVILGSLQLMNLY 556

Query: 596 TSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           T+K  S+      S++V  +  +S  LL LVN+++D+  +D+G  ++      +  ++ E
Sbjct: 557 TNKEASMTYPNNLSKHVGIMRQNSYRLLRLVNNLIDMTKIDSGFCEMQLQNHNIVSIVEE 616

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S+A  +    I +   ++ +      D  ++ +I   +LSN++ F++ G  + +   
Sbjct: 617 ITLSVAAFIENRQITLLFDTEVEERMIACDPDKIERIILNLLSNSVKFTNYGGQITVYIE 676

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
              G+ + S+K+ G  I  +    +F RF        RR  G G+GLS+ +S I L GG 
Sbjct: 677 EIEGNVVISIKDTGIGIETEKLDMIFQRFRQADDLLTRRNEGSGIGLSLAKSLIELQGGT 736

Query: 772 VSISS 776
           +S++S
Sbjct: 737 ISVTS 741


>gi|329960124|ref|ZP_08298588.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328533076|gb|EGF59849.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 648

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 133/251 (52%), Gaps = 12/251 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M+T++ +  ++   R L     A+ K  E+K+SF++H+++E+R+PL +I+GF+ LL  ++
Sbjct: 399 MITYLYIR-TLSMNRKLEAARMAVHKMGEVKSSFIRHITHEIRTPLNSIVGFSTLL--AR 455

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ +Y   + +++T LL L+ +IL +A +D+ ++ +++  + +++   E    +
Sbjct: 456 EEPDEEEKKEYAAQVESNNTYLLGLMENILTIADMDSQMIDMSWEPVNVDNCCKECVDEL 515

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG 717
            + + +  +R++ I  G + +  A R  +  + + +L NA+ F+ +G   V  K  +   
Sbjct: 516 HSAL-KPGVRLECIPSG-ISTVYAARPWMKIVLTALLDNAVKFTERGYIRVSCKEDKSRR 573

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              F V++ G  + ++  + +F RF         +G GLGL+I    + + GG V   S+
Sbjct: 574 VVCFVVEDTGIGLKQEEAEHIFERFYKVDTFT--KGSGLGLAIAHEIMAMIGGRVYWDST 631

Query: 778 DEGVTTINCRI 788
            +G     CR 
Sbjct: 632 YQG----GCRF 638


>gi|213609422|ref|ZP_03369248.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 758

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 118/219 (53%), Gaps = 16/219 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+E K++F+  +S+E+R+PL  I+G   LL    L + N +    ++ I+ S   LL +
Sbjct: 287 KANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMA-NYRDD--LQAINDSGESLLAI 343

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLG 678
           +NDILD + ++ G      + + +++   E +Q + + +H  + R++V      S+    
Sbjct: 344 LNDILDYSAIEVG-----GTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 398

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   D +R+ QI   +LSNA  F+ +GS ++L+   D+  +   V++ G  IPE    ++
Sbjct: 399 TLQGDPRRIRQIVINLLSNAAKFTDRGS-IVLRTFCDDQSWFIEVEDTGCGIPEAKLTAI 457

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F  FV     G R G GLGL+I  S     GG ++++S+
Sbjct: 458 FKPFVQAT--GCRGGTGLGLAISASLAEAMGGTLTVTST 494


>gi|149198825|ref|ZP_01875867.1| sensor histidine kinase/response regulator [Lentisphaera araneosa
           HTCC2155]
 gi|149138023|gb|EDM26434.1| sensor histidine kinase/response regulator [Lentisphaera araneosa
           HTCC2155]
          Length = 903

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 141/266 (53%), Gaps = 19/266 (7%)

Query: 528 YSIIPLPNAQTMLTFVNVTDS----VRAERALTEKNEALRKADEI---KNSFVQHVSYEL 580
           + I+ + N  T++T     +S    +     L ++ +A   ADE    K++F+  +S+E+
Sbjct: 476 FFIVMILNGVTLITTARFAESEHMRIIETNLLNQQTKAKIAADEANRSKSAFLAKMSHEI 535

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  IIGF+DLL+     S++ K   Y++ IS SS  LL+LVNDILDL+ ++AG + L
Sbjct: 536 RTPMNAIIGFSDLLQNV---SMSEKGKSYLQNISNSSNSLLSLVNDILDLSKIEAGKITL 592

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAM 699
               + ++D +N++      ++ + ++ + V  +  L   +  D  RL QI + +LSN++
Sbjct: 593 QLEALNISDFINDMHTLFVDRISKKDLNLTVSINKNLPKILELDENRLRQILNNLLSNSL 652

Query: 700 DFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
            F+  GS  I    +      D  D I +VK+ G  IP +   ++FN F  V    +   
Sbjct: 653 KFTDSGSITITADYKTKPNQEDLIDLIITVKDTGKGIPINQQPNIFNSFEQVKGQSQAVY 712

Query: 752 RGVGLGLSIVESFINLHGGHVSISSS 777
            G GLGL I     ++  G ++++S+
Sbjct: 713 GGTGLGLPISRKLADIMNGSLTVNST 738


>gi|126649410|ref|ZP_01721651.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126593735|gb|EAZ87658.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 462

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 5/235 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA+++ DE + +F+  VS+ELR+P++ + G+++ ++   +    +++ + ++ I   +  
Sbjct: 230 EAIQQEDEAQKTFLATVSHELRTPISYVKGYSEAMQNGIITE--NQKEETIQLIVREANR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L N++L LA  +     +    I L + L EV++ +  +  + NI + +  D  L  
Sbjct: 288 MERLTNELLQLARTENEQTDIVVYPIPLGETLREVQKILTHQADKKNITLHLDVDDAL-I 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  +L QIF  I+ NA+++S + S V + A   NG    ++K+ G  IP++    V 
Sbjct: 347 IQADEVKLKQIFINIIENAINYSYENSKVEMVALEKNGSAQITIKDYGIGIPQEDISHVT 406

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  V+ A      G GLGLSIVE  +    G + I S  E  T +   +P  E
Sbjct: 407 ERFYRVNKARSRADGGSGLGLSIVEQLLKQLQGRLEIKSIIEKGTIVKITLPLME 461


>gi|172062325|ref|YP_001809976.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171994842|gb|ACB65760.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1032

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T +++T   +AE  L E   A   A++ K++F+  +S+E+R+PL  IIG  +L++ ++
Sbjct: 492 LCTLLDITTRKQAEEKLREARAAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQ 551

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +     ++   +  I +SS  LL ++ND+LDL+  ++  M L      L  ++N+V    
Sbjct: 552 MAVPLRRR---LGTIMSSSDALLRVINDVLDLSKAESNQMVLESIPFDLRRVVNDVAAIF 608

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
                  N+ +   I+      +V D  RL Q+ S ++SNA+ F+ +G   I     KA 
Sbjct: 609 RPLADAKNLALTCRIAPDLANGYVGDSTRLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAG 668

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                   +V + G  IPED   ++F+ +V       RR  G GLGL +    + L GG 
Sbjct: 669 PAGRGVEIAVSDTGIGIPEDSLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGA 728

Query: 772 VSISS 776
           +++ S
Sbjct: 729 LNVDS 733


>gi|301166605|emb|CBW26181.1| putative two component system histidine kinase/response regulator
           fusion protein [Bacteriovorax marinus SJ]
          Length = 488

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +S +  R+L    E L+    +K+ F+   S++L++PL +IIG++D+LK      ++ + 
Sbjct: 245 ESSQNTRSLNVYIEELKNLSNVKDQFLAVCSHDLKTPLNSIIGYSDVLKED--AQVDDES 302

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+E I+ +S  LL LVNDIL    V            ++  +   +KQ   T   E  
Sbjct: 303 REYIEIINHASRDLLTLVNDILSCTEVHLNGEIELEEIELVKVVEYILKQVKGTSRKEFE 362

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725
            ++ +  D K      +   L ++FS I SNA  F+  G  +  +   + GDFI  S+ +
Sbjct: 363 YKLTI--DTKKPIIRGNLAMLRRVFSNIYSNAHKFTPTGGKIETRIWEE-GDFIKCSISD 419

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  IPE+  + +F R       G   ++  GLGLSIV+  +  HGG V + S ++  TT
Sbjct: 420 SGIGIPEEHLEKLFYRMSGVGREGLEGQKSTGLGLSIVKDIMEKHGGRVDVESEEDFGTT 479


>gi|265768291|ref|ZP_06095550.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263252226|gb|EEZ23774.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 766

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T S R  + L E N+      E +   +  ++++ ++PL +IIG+TDLL      + +
Sbjct: 247 DITRSNRYRKELEEANKRAEALLEAREKLMLAITHDFKAPLGSIIGYTDLLTGL---TTD 303

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y++ + +SS  LL LV+D+LD   +D    ++N  T     L  E++ S      
Sbjct: 304 ERQRFYLDNMKSSSQHLLKLVSDLLDFHRLDLNKAEVNRVTFNPAQLFEEIRISFKPLTD 363

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             ++ +    D +L G F++D  R+ QI + +LSNA+ F++KGS + L     +      
Sbjct: 364 AKHLTLSCSIDAELDGRFISDPLRIRQIVNNLLSNAVKFTAKGS-IALNITYHSSSVRIE 422

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           V + G  +     + +F  F          G GLGLSIV   + L  G +S+ S+
Sbjct: 423 VVDTGKGMAPGDREKIFQEFTRLPGAQGEEGFGLGLSIVHKLVTLLEGSISVQST 477


>gi|239908418|ref|YP_002955160.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798285|dbj|BAH77274.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 685

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 26/299 (8%)

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           D R++  NPA   L+      LS    + N   TC    +ES               ER+
Sbjct: 182 DRRLEYQNPAAERLFGKGATGLSCKNSLCN-KETCPVLADES-----------GLVRERE 229

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            L  TL    + V+  +   LP + +++   ++VT+ +R  + LT   EA   A+  K+ 
Sbjct: 230 CLINTLA--GERVMYKTARRLPGSPSIIEAMIDVTELMRTRQRLTRAMEAAEAANRAKSQ 287

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  I+G  +L   ++   L  +Q  Y++    S+  LL ++NDILD +
Sbjct: 288 FLATMSHEIRTPMNGIMGMIELAMATE---LTPEQRDYIDLARQSAVHLLEIINDILDFS 344

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
            ++AG M+L  S   L   L    +        +  R+ + I+    G  V D  RL QI
Sbjct: 345 RIEAGRMELARSRFSLGQALGVCLRLFEAPAARSGNRLSLDIAPDVPGELVGDPGRLAQI 404

Query: 691 FSKILSNAMDFSSKGSTVIL-----KAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF 742
            + ++SN + F+  G   +       A R +G     F V ++G  IP D    +F+ F
Sbjct: 405 VANLVSNGLKFTKNGFVRVAVGLDPDAPRKSGALSLRFDVSDDGIGIPTDKQARIFDYF 463


>gi|229131594|ref|ZP_04260476.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196]
 gi|228651820|gb|EEL07775.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196]
          Length = 421

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+    K  +   ++ +Y+  I   S  + NLV D+ 
Sbjct: 200 RSEFLASVAHELRTPLTYVRGYADI--ALKENTPPEQRLRYLSIIKDESDYITNLVQDLF 257

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +    + L+  L  + + I     E  I++       L     D QR  
Sbjct: 258 SLAQMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSL-LVKLDEQRFE 316

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+ + IL+NA   S + S + +    ++      +K+ G  IP +    +F+RF  V  A
Sbjct: 317 QVMANILNNAYRHSKEHSHINISVTEEHKHISIKIKDKGEGIPPEDLPHIFDRFYRVDKA 376

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 377 RSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLPS 420


>gi|163849002|ref|YP_001637046.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526964|ref|YP_002571435.1| histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163670291|gb|ABY36657.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450843|gb|ACM55109.1| histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 318

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 127/238 (53%), Gaps = 17/238 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASSTILLNLVND 626
           K++F+ ++S+ELR+PL  IIG+++LL    L    +  +  + +E I A++  LL+L+ND
Sbjct: 66  KSAFLTNISHELRTPLNTIIGYSELLHEDVLDERLAVDEVRERLERIQAAARQLLSLIND 125

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGSFVADR 684
           I++LA ++AG + LNY    +  L+ EV  +I    +  +N + + V  D ++   + DR
Sbjct: 126 IIELARLEAGDVPLNYEPWPIGLLIKEVCATIEPLVEQQQNRLVVDVQPDPEMVVHI-DR 184

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPE---DMCKS 737
           +++ Q+   +L NA+ F+ +G    +   R + D     I ++ + G  +     D+  +
Sbjct: 185 KKVRQVLLHLLDNAVKFTRQGEIKFIVTIRRSDDGTELLICNISDTGVGMTAQQLDLLFA 244

Query: 738 VFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCRIPSKE 792
            F RF  +    QR  GVG+GL+I      L  G ++++S     TT  I   +PS +
Sbjct: 245 PFTRF--DEPLTQRSSGVGIGLAIAHRLCLLMNGTIAVTSQPGSGTTFLITLPLPSDQ 300


>gi|329889746|ref|ZP_08268089.1| sensor protein kdpD [Brevundimonas diminuta ATCC 11568]
 gi|328845047|gb|EGF94611.1| sensor protein kdpD [Brevundimonas diminuta ATCC 11568]
          Length = 289

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 21/229 (9%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIG-------FTDLLKTSKLGSLNSKQSQYV 610
           + E LR+ D  + + +  VS++LR+PL+ ++G         D LK +    L     +  
Sbjct: 47  ETETLRRTDRFRGALMNSVSHDLRTPLSTVLGASTTLIDLGDKLKPAVRADLLLSIREEA 106

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +S         V D+LD+  ++ G + +    + + D+LN   + +A ++ E     K
Sbjct: 107 ERLS-------RYVGDLLDMTRLEGGGLNIRADWVDVRDVLNAAGKRVARRLGER----K 155

Query: 671 VISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +  D   +L   + D+  L Q    IL NA+ +S  GSTV L A  D G  + S+++ G 
Sbjct: 156 LARDFPAQLSLVMVDQGLLEQALVNILENAIAYSPDGSTVELAAYEDRGAVVISIEDEGK 215

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
            IP    + VF++F        R +G GLGL+I   F+    G ++ +S
Sbjct: 216 GIPTAELERVFDKFRRMEEPSDRTKGAGLGLAIARGFVEAMNGRIAAAS 264


>gi|213648654|ref|ZP_03378707.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 751

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 123/233 (52%), Gaps = 16/233 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+E K++F+  +S+E+R+PL  I+G   LL    L + N +    ++ I+ S   LL +
Sbjct: 440 KANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMA-NYRDD--LQAINDSGESLLAI 496

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLG 678
           +NDILD + ++ G      + + +++   E +Q + + +H  + R++V      S+    
Sbjct: 497 LNDILDYSAIEVG-----GTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 551

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   D +R+ QI   +LSNA  F+ +GS ++L+   D+  +   V++ G  IPE    ++
Sbjct: 552 TLQGDPRRIRQIVINLLSNAAKFTDRGS-IVLRTFCDDQSWFIEVEDTGCGIPEAKLTAI 610

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  FV     G R G GLGL+I  S     GG ++++S+    +    ++P +
Sbjct: 611 FKPFVQAT--GCRGGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLPVR 661


>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 949

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 10/221 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+E+R+P+  ++G   LL  ++L     +Q +Y E +  S+  LL ++
Sbjct: 295 ANMAKSEFLANMSHEIRTPMNGVVGMISLLLETEL---TREQKEYAETVRNSAHSLLEII 351

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
           NDILD + ++AG + L      L + L E    +A +  E  +    I D  +      D
Sbjct: 352 NDILDFSKIEAGKLDLEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFRLKGD 411

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL QI   + +NA+ F+++GS  I    LK A D     FSV + G  +     +S+F
Sbjct: 412 PVRLRQIVLNLANNAVKFTAQGSITIRVELLKQAPDLLALKFSVTDTGIGVAPSRQQSLF 471

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           + F        R   G GLGL+I +    +  G + + S +
Sbjct: 472 DAFTQAEASTTRNYGGTGLGLAISKKLAQMMKGRIGLESEE 512


>gi|53715394|ref|YP_101386.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60683362|ref|YP_213506.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
 gi|52218259|dbj|BAD50852.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60494796|emb|CAH09602.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
          Length = 766

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T S R  + L E N+      E +   +  ++++ ++PL +IIG+TDLL      + +
Sbjct: 247 DITRSNRYRKELEEANKRAEALLEAREKLMLAITHDFKAPLGSIIGYTDLLTGL---TTD 303

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y++ + +SS  LL LV+D+LD   +D    ++N  T     L  E++ S      
Sbjct: 304 ERQRFYLDNMKSSSQHLLKLVSDLLDFHRLDLNKAEVNRVTFNPAQLFEEIRISFKPLTD 363

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             ++ +    D +L G F++D  R+ QI + +LSNA+ F++KGS + L     +      
Sbjct: 364 AKHLTLSCSIDAELDGRFISDPLRIRQIVNNLLSNAVKFTAKGS-IALNITYHSSSVRIE 422

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           V + G  +     + +F  F          G GLGLSIV   + L  G +S+ S+
Sbjct: 423 VVDTGKGMAPGDREKIFQEFTRLPGAQGEEGFGLGLSIVHKLVTLLEGSISVQST 477


>gi|16332190|ref|NP_442918.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1653819|dbj|BAA18730.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 297

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 25/276 (9%)

Query: 526 LEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELR 581
           +E+S++P+ N     T ++ V   V   R   E   AL +  E+   K  F    S+E R
Sbjct: 22  VEFSLVPVANKTGFYTHWIAVQRDVTERRRTEEVRLALEREKELSRLKTRFFSMASHEFR 81

Query: 582 SPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL+  +    LL+ S++  L+  K+S+ +  I  S   ++ L++DIL +   +AG ++ 
Sbjct: 82  TPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILIINRAEAGKLEF 141

Query: 641 NYS----TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           N +     ++    + E++ S++ + +        I   +    + D + +  I S +LS
Sbjct: 142 NPNWLDLKLLFQQFIEEIQLSVSDQYY-----FDFICSAQDTKALVDERLVRSILSNLLS 196

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQR---- 751
           NA+ +S  G  + +  + D+   IF V + G  I PED  K +F  F    HRG+     
Sbjct: 197 NAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQ-KQIFEPF----HRGKNVRNI 251

Query: 752 RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC 786
            G GLGL + +  ++LH G + + S+ D+G T   C
Sbjct: 252 TGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTIC 287


>gi|327395012|dbj|BAK12434.1| sensor protein BarA BarA [Pantoea ananatis AJ13355]
          Length = 922

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 15/230 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  ++GFT  +LKT     L + Q  Y+  I  S+  LL
Sbjct: 300 QEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTP----LRTTQRDYMLTIERSANNLL 355

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +++ND+LD + ++AG + L      L   L+E    +A   HE  + + V+ D  +  + 
Sbjct: 356 SIINDVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVVCDNSVPDNV 415

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMC 735
           + D  RL QI   ++ NA+ F+ KG T+ L+  +      + +    V++ G  I E+  
Sbjct: 416 IGDALRLQQILINLMGNAIKFTEKG-TINLRVEQHTITATHVELEIQVRDTGIGISEEQQ 474

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
             +F  F        RR  G GLGL I +  +    G ++ +S  + G T
Sbjct: 475 AQLFQAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGST 524


>gi|313681453|ref|YP_004059191.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154313|gb|ADR32991.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 1088

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 17/236 (7%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +K  A+ +A E K+ F+ ++S+E+R+PL  I+GFT+LLK ++   L+ +Q ++++
Sbjct: 387 EQTLNDKQYAM-EASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTE---LHDEQREFID 442

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN--DLLNEVKQSIATKMHENNIRI 669
            I  SS  LL ++N+ILDL+ +++   KL    IV N  D      +    +  E +I +
Sbjct: 443 IIEKSSENLLEIINNILDLSKIESN--KLEIEEIVFNPIDEFESAVEVYGVRASEKHIDL 500

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------FS 722
               D  L      D  ++ ++   +LSNA+ F++ G  + +   R   + +      F 
Sbjct: 501 ACYVDPSLERPLKGDPTKIKEVIINLLSNAVKFTNSGGAISVDIRRIECEILNRTRIRFQ 560

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           VK+NG  +  +    +F  F        R+  G GLGL+I   F+ L G  + + S
Sbjct: 561 VKDNGIGVTSEQRSRIFEAFSQADTSITRKYGGTGLGLTISSRFVELMGSKLDLES 616


>gi|308070885|ref|YP_003872490.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305860164|gb|ADM71952.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 317

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 141/269 (52%), Gaps = 12/269 (4%)

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           SL+  L+++S+  L Y +  +   +      N+  ++ AER L ++ E  RK +  K   
Sbjct: 21  SLEQGLQIISEGYLNYRVPVMRKDELGRVAFNI--NLMAER-LQQQIEKERKLENSKLEM 77

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S++LR+PLT+IIG+ +LL+T+   +   + +++V+     +  L  L+ND+ +   
Sbjct: 78  ITGISHDLRTPLTSIIGYIELLRTNSFQN-KDEYTRFVQNTYNKAIHLKKLLNDLFEYTR 136

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSF-VADRQRLLQI 690
           + +   +L+ + I +  LL+++         EN I I  I D GK     V D +++ + 
Sbjct: 137 LTSVDTRLDLNKIDVFQLLDQLVFEFEPIAEENGINI--IKDLGKSPIITVIDSKKIARA 194

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV----SNA 746
              +L NA+ +S K  TV +    DN      ++N G+ + ++    +FNRF     S +
Sbjct: 195 IDNLLMNALKYSVKPGTVRILMKLDNKQISIEIENKGNPLTQEQENKLFNRFYKVDHSRS 254

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             G + GVGLGLSI  + I LHGG ++++
Sbjct: 255 SEGIQTGVGLGLSIARNIIELHGGTLTLN 283


>gi|167894120|ref|ZP_02481522.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia pseudomallei 7894]
 gi|167918831|ref|ZP_02505922.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia pseudomallei BCC215]
          Length = 1082

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 9/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL +++G  +L+     G L  +Q   V+ +  S+  L+ +VND+LD + +D 
Sbjct: 501 MSHEIRTPLASLVGNIELIAR---GPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDV 557

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      + +LL+ +  S A    +  ++  ++ D  L +    D  R+ QI + +
Sbjct: 558 GELSLMEEWSNIAELLDRLALSHAPLATQQGLKFYMVFDRSLPARLYFDPIRVSQIVNNL 617

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQR 751
           LSNA+ F+  G  ++L+A    G    SV ++G  IP+D+   +F  F    SN  R Q 
Sbjct: 618 LSNALKFTPSGK-IVLRAGWRAGALEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLR-QA 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RG GLGLSI      L  G + + S+    T I   +P
Sbjct: 676 RGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVTLP 713


>gi|167772672|ref|ZP_02444725.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
 gi|167665150|gb|EDS09280.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
          Length = 566

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 118/232 (50%), Gaps = 10/232 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           ++A++++  F  +VS+EL++PLT+I GF ++++    G  ++ Q   ++   I   +  L
Sbjct: 335 QRAEQVRRDFAANVSHELKTPLTSISGFAEMMEN---GMADNSQDVRRFAGRIYTQAQRL 391

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + L +DI+ L+ ++   +  N   + L  L +   +++     +  + I V   G     
Sbjct: 392 IALTDDIIRLSRIERADLTENVP-VELRALCDRAVETLRFTAEQKQVEIAVT--GGPAPV 448

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             DRQ L ++ + ++ NA+ ++  G  V +  +  +G     V + G  IP++  + +F 
Sbjct: 449 RGDRQMLDELITNLMDNAVKYNRPGGRVDVSLSVQDGLVCLRVADTGIGIPKEHQERIFE 508

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF  V  +   Q  G GLGLSIV+  +  HGG +++ S     T +  R+P+
Sbjct: 509 RFYRVDQSRSKQTGGTGLGLSIVKHVVERHGGSITLESVPGEGTAVTVRLPA 560


>gi|313157297|gb|EFR56722.1| PAS domain S-box protein [Alistipes sp. HGB5]
          Length = 743

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 123/239 (51%), Gaps = 17/239 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E+ L    E   +++++K +F+ ++S+E+R+PL  I+GF+ LL T +   + 
Sbjct: 502 DITALKQTEQELIAAKERAEESNKLKTAFLANMSHEIRTPLNAIVGFSQLLTTEEDPEV- 560

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             + +Y + +S ++ +LL +++D+LDL+ +++G   L  +   L  L  E  ++   +  
Sbjct: 561 --RKEYNDIVSLNNGLLLQIISDVLDLSRIESGHADLVRTRFDLRTLCREAVETFRLQTP 618

Query: 664 ENNIRIKVISDGKLG----SFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGD 718
           E     +V+ D + G    +    RQ L+QI +  + NA+ F+ KG  TV  +  RD   
Sbjct: 619 E-----EVVLDVEKGLPSCTVCQYRQGLMQILANFIRNALKFTPKGFVTVGFERKRDR-- 671

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               V++ G  IP +    +F RF       Q  G GLGLSI +S     G  + + S+
Sbjct: 672 LSLYVRDTGIGIPAEELDKIFERFYKVDTFTQ--GTGLGLSICKSIAEQMGAQIGVDSA 728


>gi|296111787|ref|YP_003622169.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295833319|gb|ADG41200.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 451

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 133/262 (50%), Gaps = 24/262 (9%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L +A+ M+   ++T  ++AER              +++ F+ + S+EL++PLT I GF +
Sbjct: 208 LQHAEVMIILYDLTSVLQAER--------------MQSDFLANASHELKTPLTAITGFVE 253

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L+     SL ++Q Q++  ++  +  L +LV+DIL L+ V      ++    V +D++N
Sbjct: 254 TLQGPAGESLETRQ-QFLGIVAEEAQRLTSLVSDILSLSRVQQKSEAVSLEMAV-HDMVN 311

Query: 653 EVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +  Q + T     ++ +K  V SD  +  F  D   +LQ    ++ NA+ ++     +++
Sbjct: 312 DQWQHVQTLASVKHVALKNDVPSDFFVRGFKNDMATILQ---NLIVNAVKYNKPNGHILI 368

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINL 767
            A +D+  +  +VK+ G  IP++    +F RF       QR    G GLGLSIV   +  
Sbjct: 369 TAYKDHQHWQINVKDTGIGIPKNQQSRIFERFYRGDESRQRTIASGTGLGLSIVNEIVRK 428

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G + ++S     TTI+  +P
Sbjct: 429 HNGDLKVNSQVGVGTTISVTLP 450


>gi|213970545|ref|ZP_03398672.1| extracellular solute-binding protein/sensory box protein
           [Pseudomonas syringae pv. tomato T1]
 gi|213924716|gb|EEB58284.1| extracellular solute-binding protein/sensory box protein
           [Pseudomonas syringae pv. tomato T1]
          Length = 1062

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 127/256 (49%), Gaps = 12/256 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           +++++D  +    L    E    A   K++F+  +S+E+R+P+  +IG  +L LK +  G
Sbjct: 689 WIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQG 748

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+      +E   +S+  LL+L+ DILD+A +++G + LN     L  L+  V +    
Sbjct: 749 ELDRSA---IEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDG 805

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
              + ++ + +  D ++ + V  D  R  QI S ++SNA+ F+  G   I   A DN D 
Sbjct: 806 LARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMGRVKIALQAVDNPDP 865

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHV 772
                  +V+++G  I  +  K +F  F    + GQ  R G GLGL I  S   + GG++
Sbjct: 866 QLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNL 925

Query: 773 SISSSDEGVTTINCRI 788
           S+ S     T I+  +
Sbjct: 926 SLDSEPGNGTRISMNL 941


>gi|170693150|ref|ZP_02884311.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170142148|gb|EDT10315.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 882

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 5/232 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           ALR+ D  K+ F+  +++ELR+PL  +     LL+  K   +  K  + V  +      +
Sbjct: 500 ALRETDRRKDEFLAMLAHELRNPLAPMRNAIALLRRQKDAGM--KPGELVGMLGRQVDHM 557

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV+D+L+++ +  G + L    ++L   +    +++++        + V         
Sbjct: 558 AQLVDDLLEVSRITHGRIVLRREPLLLGTAVYGALETVSSMAASRGQHLTVRLPPTPVWL 617

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD  RL QI   +L+NA  ++  G +V + A  D      ++++NGS I  D+   +F+
Sbjct: 618 HADPLRLSQILVNVLNNACKYTDHGGSVCVTALADERFATVTIEDNGSGISPDLLPHIFD 677

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            F        R   G+G+GLS+V+  + LHGG + I+S   G   T++ R+P
Sbjct: 678 LFAQGERTLDRAHGGLGIGLSLVKKLVELHGGTIEIASPGPGRGATVSIRLP 729


>gi|241204212|ref|YP_002975308.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858102|gb|ACS55769.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 511

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 185/430 (43%), Gaps = 37/430 (8%)

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           + L +G  + +    +  GG I  +E+++  + +E       +     + ++  G+ +F 
Sbjct: 77  FALSDGGMVSLTCAPSRDGGWILSYEDISTLIRVEDSLTEQHRRFDAALSNMPHGLCMFD 136

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDE 510
               + L N ++  ++   +    PGT + +I A  SR  N  +D    F  +  +    
Sbjct: 137 STKNLILCNASYARMYNLPDLLTQPGTPLVDILAYRSREGNGPADTAAYFDVVFEATARG 196

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL-------- 562
             + Q  + L    V++ +  P+     + T  +VT +VR    L   ++ L        
Sbjct: 197 APASQNIV-LADGRVIKITHNPMQTGGYVATHEDVTKTVRLAEELRRHHDQLEATVKSRT 255

Query: 563 -----------------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                            R  +E++  FV   S+E R+PL  I      L   K G++  +
Sbjct: 256 AEVERQARELERMLAQERNINELQRQFVAMASHEFRTPLAIIDAAAQRL-LRKRGAVEPE 314

Query: 606 -QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKM 662
             S  V+ I AS T +++L+  IL    +D G + ++Y    L  L+     +QS   K 
Sbjct: 315 FLSDKVDQIRASVTRIVDLMESILSAGRLDTGKIDISYDACALRSLIKTCCERQSTIAKS 374

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           H    R+ +  DG L  F+ AD + L Q+F+ +LSNA+ ++   S + + A  + G+   
Sbjct: 375 H----RLVLDIDG-LPEFIDADPRTLAQVFTNLLSNAVKYAPGTSEIRVTAWAETGNVKV 429

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           S+ ++G  I  +    +F R+          G G+GL++V+  + LH G + + S+    
Sbjct: 430 SISDDGVGIDAEDVPRLFQRYFRARTSTGIAGTGIGLNLVKQIVELHNGSIEVRSARGCG 489

Query: 782 TTINCRIPSK 791
           +T    +P K
Sbjct: 490 STFIVTLPIK 499


>gi|317499179|ref|ZP_07957455.1| His Kinase A domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893538|gb|EFV15744.1| His Kinase A domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 697

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 7/237 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+AL    E   K + +K   + +VS++L++PLT+IIG+ DLL  S+  +L+++   YV 
Sbjct: 460 EKAL----ETQMKGERMKIDLITNVSHDLKTPLTSIIGYVDLL--SRDQTLSAESRDYVT 513

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +   +  L ++++D+ +LA   +G  K++   + +  L+ +    +A ++ E+   I+ 
Sbjct: 514 ILINKTERLKSIISDLFELAKATSGDAKVDLEEMDMKRLVEQTLGDMADQIEESGFAIRY 573

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +     F+ D  R+ ++   ++ NA+ +S KG+ + L+    + +    V N  S   
Sbjct: 574 QCEATHTRFIGDSSRMYRVVQNVIENALKYSLKGTRIFLRITEADQNIKLEVINTASYEM 633

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS-SSDEGVTTINCR 787
               + +  RF          G GLGLSI +SF    GG  SI    D+ + TI  +
Sbjct: 634 NFTEEEIMERFARAEKSRTSEGNGLGLSIADSFTKNCGGEFSIRIDGDQFLVTIQFK 690


>gi|309790010|ref|ZP_07684585.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227953|gb|EFO81606.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 501

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 12/239 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A RAL    +A  +    + SF+ + S+ELR+PLT I   T++ L+T+   S +  Q   
Sbjct: 262 AGRALGPAQQAWER----QQSFIANASHELRTPLTLIRASTEVALRTAP--SNDDDQRDL 315

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E + + +  +  LV+D+L L+ +D+G +KL    + L +LL +V++ +     E  I+I
Sbjct: 316 LEDVLSEADHMRRLVDDLLTLSRLDSGRLKLEQVPVDLVELLGDVQRQMNRVSQELAIQI 375

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++   G +  FV AD  RL Q+   +L NA+  S+  + + L A          V + GS
Sbjct: 376 RL---GDVAGFVLADPDRLRQVLLILLDNALRHSAADTAITLSAQPHGHQVQIHVTDQGS 432

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +    +F+RF  ++A RG     GLGL I +  I    G + ++S  +  TT+  
Sbjct: 433 GIAPEHLPHIFDRFYRADAARGVSGNAGLGLPIAKGLIEAQRGKLHVTSQLKVGTTVTI 491


>gi|295402033|ref|ZP_06811994.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975924|gb|EFG51541.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 456

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 8/242 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + L    E L+K    +N F+  +S+ELR+PLT + G+ D+ +   +G    ++++Y
Sbjct: 219 KAIQTLARDLEYLKKE---RNEFLASISHELRTPLTYVKGYADIARRPNMG--EEERNRY 273

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  +  LV D+ +LA +D    +++     L     ++   +        + +
Sbjct: 274 LSIIYEEAEHMQKLVKDLFELAKMDQHSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSL 333

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               DG +   + D++R  Q+   +L NA+ +S +GS V +   ++    +  V + G  
Sbjct: 334 VYYCDGSITVHI-DQKRFEQVMMNLLDNALKYSDQGSIVSIDVRKEKHHIVIIVSDEGRG 392

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    +F RF  V  +      G GLGL+IV+  +  HGG +  +S     T +   
Sbjct: 393 IPKEDLPHIFERFYRVDKSRSRTSGGTGLGLAIVKEIVEAHGGAIYAASEYGKGTNMIIT 452

Query: 788 IP 789
           +P
Sbjct: 453 LP 454


>gi|238796160|ref|ZP_04639671.1| Multi-sensor hybrid histidine kinase [Yersinia mollaretii ATCC
           43969]
 gi|238720105|gb|EEQ11910.1| Multi-sensor hybrid histidine kinase [Yersinia mollaretii ATCC
           43969]
          Length = 890

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  +A  +A   K   +  +S+E+R+PL   +G  +LL+ +   +L  +Q +  E  
Sbjct: 346 ALAKSKQAAEQAHRRKRVHLTTISHEIRTPLNGALGAVELLQNT---ALTPEQYRLAETA 402

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  LL ++N++LD + +++G M L+     L  LL++   +I ++    ++ +    
Sbjct: 403 RQCSHSLLAIINNLLDFSRIESGQMTLSQEKTALLPLLDQAMLTIHSQALSQSLFLSTYV 462

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             ++  S   D Q L QI   +L NA+ F+ +G   +    +DN    F+V++ GS I  
Sbjct: 463 SSEVPLSVELDSQHLKQILINLLGNAIKFTQQGHISLNVECKDN-QLCFTVEDTGSGIDS 521

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +++F+ FV       R G GLGL+I ++   + GG +++SS
Sbjct: 522 QHQQAIFSPFVQAC--DHRHGTGLGLTIADNLARMMGGKITLSS 563


>gi|197104132|ref|YP_002129509.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477552|gb|ACG77080.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 538

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 16/256 (6%)

Query: 538 TMLTFVNVTDSVRAERA--LTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNII 588
           TML  +  + +  A  A  +T   EA R       +A   K  F+  +S+E+R+PL  ++
Sbjct: 121 TMLALLQASAAETASHAGEMTRLAEAARASSAQAHEALAAKARFLAVMSHEIRTPLNGVL 180

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L+  KL   +++ +  V  I  S  +LL L+ND LDL+  +A  ++L+ + + + 
Sbjct: 181 GVAEILR-RKL--PDAELAPLVNTIIESGGVLLRLLNDALDLSRAEAAGLELDEAPLPVA 237

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
           +LL++V      +     + +    DG    +V  DR RL QI + ++ N + F+  G  
Sbjct: 238 ELLDDVLALWTPQADIRGVPLTGAYDGPQDLWVLGDRVRLRQILNNLVGNGLKFTGAGGV 297

Query: 708 VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            +   AR  GD +    +V ++G  +P +  +++F  F       +R G GLGL++    
Sbjct: 298 HVRLTARTEGDCVRLAGAVSDSGPGVPPERLETIFQPFQQTEEGVRRGGAGLGLAVCRQI 357

Query: 765 INLHGGHVSISSSDEG 780
           +    G +   +  EG
Sbjct: 358 VQRMDGTIQARNRPEG 373


>gi|6448582|emb|CAB61240.1| virulence protein S [Klebsiella pneumoniae]
          Length = 1218

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 132/254 (51%), Gaps = 9/254 (3%)

Query: 544 NVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++T+S +   AL  EK++A+ +A   K+ F+  +S+E+R+P++ I+GF +LL T      
Sbjct: 687 DITESRKLMEALQVEKDKAI-EASRAKSRFLARMSHEIRTPVSAIMGFLELLATGPQSER 745

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++S  + Y +A S  L+ L+ D+LD+  +++G  +L    + +  L      + A   
Sbjct: 746 EAQESLQLAYATAQS--LIGLIGDVLDMEKIESGNFELTPEWVDIEALTQATMANFAGLA 803

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNG 717
            + N+++ V      G  +  D Q + Q+ +  LSNA+ F+  G   I    +    D  
Sbjct: 804 RQKNLQLTVSYQLNAGGILFLDPQAIKQVLANFLSNAIKFTVSGGVEIKVETQPRENDAA 863

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             + SVK++G  I E+  + +F  F   +   ++ G GLGL+I +  ++   G +S++S 
Sbjct: 864 QLMLSVKDSGVGISEEEQQLLFKPFSQASCGKKQMGSGLGLTICKELMDRMHGTISVASH 923

Query: 778 DEGVTTINCRIPSK 791
               TT++  + ++
Sbjct: 924 PGTGTTMSIYVQTQ 937


>gi|163849377|ref|YP_001637421.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222527374|ref|YP_002571845.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163670666|gb|ABY37032.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222451253|gb|ACM55519.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 452

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 116/232 (50%), Gaps = 6/232 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++A E++      ++++LR+PLT I G+ + L+ ++L +  ++       +   +  LL
Sbjct: 217 LQRATELRRRMTADIAHDLRTPLTVIAGYLEALRDAELPATPAR----FAAMHTETQTLL 272

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+  L+  DAG + L    I ++DLL  + +       +  IR+   S+       
Sbjct: 273 RLVEDLHTLSLADAGELPLRCREIAVDDLLERIVRIYNDAAQQAGIRLHRQSEPAGMRIY 332

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D ++L++  S ++SNA+ ++ +G  ++++A R     + SV++ G  IP +   +VF R
Sbjct: 333 GDEEQLVRALSNLVSNALRYTPEGGEIVIEATRQGHQIMLSVQDTGPGIPPEHLPNVFER 392

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  +  +      G GLGL+IV S    H G  ++ S+          +P++
Sbjct: 393 FYRIDESRHTGSGGSGLGLAIVRSIAQAHNGTATVHSTPGAGARFTIALPAE 444


>gi|237769861|gb|ACL81481.3| ethylene receptor [Dimocarpus longan]
 gi|264683475|gb|ACY72568.1| ethylene receptor [Dimocarpus longan]
          Length = 636

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 125/268 (46%), Gaps = 36/268 (13%)

Query: 547 DSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA+  L E+N AL        KA   +N F   +++E+R+P+   I  + LL  +  
Sbjct: 315 ESMRAQNQLMEQNVALDLARREAEKAIHARNDFRAVMNHEMRTPMHATIALSSLLLET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L   Q    E +  SS IL  LV+D+LDL+ ++ G + L+     L  ++ EV   I 
Sbjct: 373 -DLTPDQRVMTETVLKSSNILATLVDDVLDLSRLEDGSLNLDIGQFNLRAVIKEVMDLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + +       L ++ V D +RL+Q    +  NA+ F+ +G   I+      ++
Sbjct: 432 PIASLKKLSMTSFLAPDLPTYAVGDEKRLMQTILNVAGNAVKFTKEGYVSIIATVAKPES 491

Query: 713 ARD-----------NGDFIFSVKNN--GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
           +RD           +G F   V+ N  G  +P      +F +F S +H    R   G GL
Sbjct: 492 SRDWRPPEFYPVSSDGHFYLRVQVNDSGCGVPPQDIPLLFTKF-SQSHSDNTRKSGGAGL 550

Query: 757 GLSIVESFINLHGGHVSISSS--DEGVT 782
           GL+I   F+NL GGH+ I S   D+G T
Sbjct: 551 GLAISRRFVNLMGGHIWIESEGLDKGST 578


>gi|229159730|ref|ZP_04287739.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803]
 gi|228623755|gb|EEK80572.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803]
          Length = 461

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           ++ F+  V++ELR+PLT + G+ D+ LK S   +   ++ +Y+  I   S  + NLV D+
Sbjct: 235 RSEFLASVAHELRTPLTYVRGYADIALKES---TPPEQRLRYLSIIKDESDYITNLVQDL 291

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
             LA ++     +  + + L+  L  + + +     E ++++ +     L     D QR 
Sbjct: 292 FLLAQMEKHSFSIVVTEVQLHSFLTRITEKVNAMYKERHVKVSLTCPSSL-LVKLDEQRF 350

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+   ILSNA   S + S + +    +      ++K+ G  IP +    +F+RF  V  
Sbjct: 351 EQVIVNILSNAYRHSKEHSHINISVTEETKRISITIKDEGEGIPPEDLSHIFDRFYRVDK 410

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           A      G GLGLSIV+  + LHGG++++SS
Sbjct: 411 ARSRATGGTGLGLSIVKEIVELHGGNITVSS 441


>gi|218670543|ref|ZP_03520214.1| multi-sensor signal transduction histidine kinase [Rhizobium etli
           GR56]
          Length = 186

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 5/185 (2%)

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I  S   LLN++NDILD++ ++AG ++L+   I L  L+ E  +  A    E NI
Sbjct: 1   EYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHCERIDLVPLIEESLRFTAIPAAEKNI 60

Query: 668 RI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            I + IS G   +  ADR+ + Q+   +LSNA+ F+  G  + ++  R +G    ++ + 
Sbjct: 61  VIDQRISSGL--TLTADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVTVTIADT 118

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP      +   F  V + +   + G GLGL+I  S   LHGG + I S +   T I
Sbjct: 119 GIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVI 178

Query: 785 NCRIP 789
           + RIP
Sbjct: 179 SLRIP 183


>gi|92113190|ref|YP_573118.1| Hpt sensor hybrid histidine kinase [Chromohalobacter salexigens DSM
           3043]
 gi|91796280|gb|ABE58419.1| Hpt sensor hybrid histidine kinase [Chromohalobacter salexigens DSM
           3043]
          Length = 695

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R +R   E   A+++A+   + K+ F+  +S+E+R+PL  ++G  D+L+         K+
Sbjct: 163 RLQRQSQELQRAVQQAEAASQSKSEFMAIMSHEVRTPLNGVVGMLDVLEDE---PCQEKR 219

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q+   +  S+  L  ++ND+LD + ++AG + L +S   L  +++ + +   ++   + 
Sbjct: 220 EQHFATLRESTASLRAVINDVLDYSKIEAGRLDLEHSPFPLTRMVSRLAEGYQSRQTSDV 279

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             I  + D      + D  RL Q+   ++ NA  F+  GS  +   +R      F V++ 
Sbjct: 280 SLIVQLGDDLPPVVIGDATRLRQVLMNLMDNAFKFTQVGSITLSVQSRKPATIFFEVRDT 339

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I + +  ++F  F        RR  G GLGL+I    +   GGH+ ++S
Sbjct: 340 GVGIDKQVQAALFEPFTQVDTSLSRRHEGTGLGLAICYRLVEAMGGHLELNS 391


>gi|117926235|ref|YP_866852.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609991|gb|ABK45446.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 764

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 108/234 (46%), Gaps = 10/234 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R L    EA  +A+  K  F+  +S+E+R+PL  ++G +DLL  S    LNS Q  +
Sbjct: 219 RRTRELRLAKEAAEQANLAKTEFLATMSHEIRTPLNGVLGMSDLLLES---DLNSYQRHH 275

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  S   LL ++NDILDL+ + AG M L  +   L   L +V+     +     +  
Sbjct: 276 VETIHRSGRTLLRVINDILDLSRIQAGRMPLEVTAFKLRACLEDVQALFKDQARRKGLSF 335

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIF--SVK 724
            +    +L    + D  RL QI   ++ NA+ F+ +G   +   A      D +    V+
Sbjct: 336 SINCQEELPQRLLGDATRLNQILFNLVGNALKFTERGFVRVSVQAEQVREADLLLRIQVE 395

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++G  I ++    +F  F        RR  G GLGL I      + GG +  SS
Sbjct: 396 DSGIGISDEYKNRLFEIFSQQDSSISRRYGGSGLGLVITRKLAQIMGGKLGFSS 449


>gi|301385098|ref|ZP_07233516.1| PAS [Pseudomonas syringae pv. tomato Max13]
          Length = 1046

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 127/256 (49%), Gaps = 12/256 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           +++++D  +    L    E    A   K++F+  +S+E+R+P+  +IG  +L LK +  G
Sbjct: 673 WIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQG 732

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+      +E   +S+  LL+L+ DILD+A +++G + LN     L  L+  V +    
Sbjct: 733 ELDRSA---IEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDG 789

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
              + ++ + +  D ++ + V  D  R  QI S ++SNA+ F+  G   I   A DN D 
Sbjct: 790 LARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMGRVKIALQAVDNPDP 849

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHV 772
                  +V+++G  I  +  K +F  F    + GQ  R G GLGL I  S   + GG++
Sbjct: 850 QLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNL 909

Query: 773 SISSSDEGVTTINCRI 788
           S+ S     T I+  +
Sbjct: 910 SLDSEPGNGTRISMNL 925


>gi|224092694|ref|XP_002309700.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|222855676|gb|EEE93223.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 923

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 60/306 (19%)

Query: 543 VNVTDSVRAERALTEKNE--ALRKADEIKNSFVQHV--------------SYELRSPLTN 586
           ++VTD VR    +    E  A++KA E + +   H+              S+E+RSPL+ 
Sbjct: 323 MDVTDQVRKREKMARLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSG 382

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++   ++L T+   +L+ +Q Q +  + +S  ++L L+NDILDL+ V++G+MKL  +   
Sbjct: 383 VVSMAEILSTT---NLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFR 439

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +++  V Q+ A  + +       ++D      + D  R+ QI + ++SNA+ F+ +G 
Sbjct: 440 PREVVKHVLQTAAASLQKILTLEGRVADDVPIEVIGDVLRIRQILTNLISNAIKFTHEGK 499

Query: 707 TVIL----------KAAR-------------------DNGD----------FIFSVKNNG 727
             I           KA R                   D G+              V + G
Sbjct: 500 VGIKLYVVSDPCYGKAERKHQNNEPQTPVKNGNTMDGDKGEEPEVPGTTVWLCCDVYDTG 559

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP++   ++F ++  VS  H  +  G GLGL+I +  + L GG +++SS  +  +T  
Sbjct: 560 IGIPDNALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKVKCGSTFT 619

Query: 786 CRIPSK 791
             +P K
Sbjct: 620 FVLPYK 625


>gi|189423187|ref|YP_001950364.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419446|gb|ACD93844.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 774

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 15/271 (5%)

Query: 531 IPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +PL +A   +T     FV++   V+A+    +   A   A+  K++F+ ++S+E+R+PL 
Sbjct: 357 VPLRDASGSITGVVAAFVDIGQLVQAQEEARQARLAAEAANRAKSAFLANMSHEIRTPLN 416

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G   LL+ ++   L  +Q  Y+  I +SS+ LL+L+ND+LDL+ ++AG + L     
Sbjct: 417 GIVGTAQLLEFTR---LTGEQKDYLADIKSSSSTLLSLLNDVLDLSKIEAGKITLESLDF 473

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L   ++ V +S+ +      ++I++ I D        D+ R  QI   +L NA+ F+  
Sbjct: 474 RLRASIDGVIKSLKSLAQSKGLQIELQIPDSVPDCLKGDQTRFKQILLNLLGNAVKFTET 533

Query: 705 GS-TVILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           G  TV ++    + D +     VK+ G  I   M + +F  F        ++  G GLGL
Sbjct: 534 GGITVSVRLKEQHNDQLLLEIDVKDTGIGISPQMLEMIFEPFTQAETSLTKKYGGTGLGL 593

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I +  + + GG +   S   G +T +   P
Sbjct: 594 AICKRLVTMMGGQLWAESVAGGGSTFHLAAP 624


>gi|188588135|ref|YP_001921036.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498416|gb|ACD51552.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 515

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 111/219 (50%), Gaps = 8/219 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILL 621
           + +K  F   VS+E ++PL  I+    LL    K   L        +Y+  I  +S  LL
Sbjct: 252 ESLKTEFFATVSHEFKTPLNIILTTVQLLADKFKNDVLTEEVKINLKYINGIKQNSYRLL 311

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVN+++D+  +D GI KL+     +  ++  +  S++  ++E N  I   +  +     
Sbjct: 312 KLVNNLIDITQIDGGIYKLSLENCNIVSVIENIVISVSKYINEKNRNIIFDTTKEEIILA 371

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVF 739
            D  ++ +I   +LSNA+ ++++G  + +  + D  N   I  +K++G  IPE    S+F
Sbjct: 372 IDCDKIERIILNLLSNAVKYTNRGGNIYVNLSTDINNNRVIVKIKDDGIGIPEKDMDSIF 431

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            RF  +     RR  G G+GLSIV S I +HGG + +++
Sbjct: 432 RRFKQSGDVFTRRCEGTGIGLSIVRSLIEMHGGKIKVNN 470


>gi|189424899|ref|YP_001952076.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421158|gb|ACD95556.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 641

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 21/291 (7%)

Query: 511 RKSLQGTLELLSDSVLEY----SIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKA 565
           +K LQ  LELL +   +Y    S+  L  +  +L   VN+        AL    E    A
Sbjct: 219 KKPLQQALELLQEIPEQYRPVQSVTALDESNRLLRAMVNLVT------ALKAAKEQAEAA 272

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K +F+  +S+E+R+P+  I G T+L       + +++Q + +E IS ++  LL+L+N
Sbjct: 273 SSAKGAFLAQMSHEIRTPMNAISGLTELALDQ---APSAQQRELLEGISHAANHLLSLIN 329

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADR 684
            +LD + ++AGI++L      L   L       + ++    +R + V++D      + D 
Sbjct: 330 QVLDFSKLEAGIVELEQIPFNLRQTLTATLLPFSVRVRSKGVRFETVLADNLPTRVIGDP 389

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFN 740
            RL Q+   ++ NA+ F+ +G   I ++     G   +    V++ G  IP++    +F 
Sbjct: 390 TRLRQVLVNLVGNAVKFTRQGCIEIDVEKGEQTGNHCELRIMVRDTGIGIPQEKIAQIFA 449

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +   A    R   G GLGLSIV+  + +  G +++ S     T  +  +P
Sbjct: 450 PYSQAAASTTREFGGTGLGLSIVKQLLEVMQGTITVESQPGAGTCFSVSVP 500


>gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella
           amazonensis SB2B]
 gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1236

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 32/358 (8%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEE---------NRLSPGTHIRNIAATC 487
            +D + +G+  +  D    + NPA+ S+  +KT E         + + P   IR      
Sbjct: 588 AMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKTNEFPALLSTIDSLIHPDDRIR------ 641

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            + Y E    D   A    F    K+ Q    L    V+E++    P  + + T  ++T 
Sbjct: 642 VQEYREQYLKDPIGAYEIEFRMRAKTGQYHWMLSRGRVVEFTQDAQPK-RMVGTHKDITR 700

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ +   SL  +Q 
Sbjct: 701 HKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG---MLQLAGRTSLTEQQK 757

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y++  S S+  LL ++NDILD + ++AG ++L      L+ +L+      A +  E  I
Sbjct: 758 DYLDKASFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQEKGI 817

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720
            + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+        
Sbjct: 818 ELLLYAPVSAGIMLKGDPLRLGQVLINLLSNAVKFTQNGEIEL--GCEDVGERDHRITLK 875

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F V++ G  I  +    +F+ F        R+  G GLGLSI +  +++ GG + + S
Sbjct: 876 FWVRDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVES 933


>gi|229068028|ref|ZP_04201337.1| hypothetical protein bcere0025_2450 [Bacillus cereus F65185]
 gi|229077629|ref|ZP_04210260.1| hypothetical protein bcere0023_3330 [Bacillus cereus Rock4-2]
 gi|228705683|gb|EEL58038.1| hypothetical protein bcere0023_3330 [Bacillus cereus Rock4-2]
 gi|228715095|gb|EEL66961.1| hypothetical protein bcere0025_2450 [Bacillus cereus F65185]
          Length = 314

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++++E +   +  +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +
Sbjct: 80  KRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKH 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV++I ++A +DA    L    +  +++  EV      ++ ++NI ++++        +A
Sbjct: 139 LVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPDSTCPIIA 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   +++I   ++ NA+ +   G T+ ++    + ++   + + G  I +   +++F R 
Sbjct: 199 DHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIQKHDLQNIFERM 258

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + S   R     G GLGLSI ++ +  +GGH+ + S+    TT    IP
Sbjct: 259 YRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIP 307


>gi|297588713|ref|ZP_06947356.1| sensor histidine kinase KdpD [Finegoldia magna ATCC 53516]
 gi|297574086|gb|EFH92807.1| sensor histidine kinase KdpD [Finegoldia magna ATCC 53516]
          Length = 642

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 130/234 (55%), Gaps = 6/234 (2%)

Query: 548 SVRAERALTEKNEA-LRKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           ++  E+ + +KN A L+  DE  K + ++ +S++LR+PLT I G +D+L  +      S 
Sbjct: 397 ALEKEKVIEDKNRANLKIKDEQFKTNLLRSISHDLRTPLTTICGDSDILLNNYKNLTESM 456

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +  + I   S  LLNL+ +IL +  V+ G MKL     ++ ++++E  + I     ++
Sbjct: 457 KLELFQDIYDDSQWLLNLIENILSITRVEEGRMKLKIEPQIVEEVIDEALKHINRDKRKH 516

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI + +  +  + +   D + ++Q+   ++ NA+ ++ +GS +++KA + + + I  + +
Sbjct: 517 NINVDIEDEYLMANM--DVRLIIQVIINLVDNAIKYTDEGSNILIKAFKKDENTIIQICD 574

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +G+ I ++  + +F +F ++  +    +R +GLGL + +  +  HGG + +  +
Sbjct: 575 DGNGIRDNDKEKIFRKFYTSNDKISDNKRSIGLGLYLCKIIVEAHGGSIKVEDN 628


>gi|219853029|ref|YP_002467461.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219547288|gb|ACL17738.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 575

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 155/365 (42%), Gaps = 28/365 (7%)

Query: 445 EGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-- 501
           +GV     DGRI   NPA  R L K      SP   I   +     +    DG       
Sbjct: 214 QGVVYQNADGRIISMNPAAERILGK------SPAEFINQTSEDTEHHTIREDGTKFLGLE 267

Query: 502 ----AIITSFDDERKSLQGTLELLSDSVLEYSIIPLP--------NAQTMLTFVNVTDSV 549
                 + + +D +  + G            SI  +P          Q    F ++T+  
Sbjct: 268 HPAMVALRTGEDIKDVVMGVFNPREQGYRWISIDAVPLFHPSEKRPYQVYTIFDDITERR 327

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE  L E  E ++ ++E    F    S++L+ PL NI+ F+ LL     G L++   +Y
Sbjct: 328 KAEEVLREYGEKVQASNEELQQFAYVTSHDLQEPLRNIVSFSQLLNRRYQGRLDADADEY 387

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + +I      +  L+ D+L  + V      L    + ++ ++ +V + +  ++ E N   
Sbjct: 388 LGFIIEGGQRMQLLIKDLLQFSQVQTTARPL--EQVDMHGVVADVLRMMERQIREAN--- 442

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK--GSTVILKAARDNGDFIFSVKNNG 727
             ++ G L + +AD  +L Q+F+ ++ NA+ +        + + A R    + F+V +NG
Sbjct: 443 ATVTMGDLPAIMADASQLEQVFTNLIGNALKYRRHDLPPAIQISAERMRKCWRFAVADNG 502

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I  +    +F  F       +  G G+GL+IV+  +  HGG VS++S     +T    
Sbjct: 503 IGIAPEFFDRIFVVFQRLHTIEEFEGTGIGLAIVKKIVERHGGRVSVTSVPGEGSTFFFT 562

Query: 788 IPSKE 792
           +P+ E
Sbjct: 563 LPAVE 567


>gi|186685533|ref|YP_001868729.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467985|gb|ACC83786.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 937

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 14/236 (5%)

Query: 550 RAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R E    E  EA   AD     K+ F+ ++S+ELR+PL  I+G+  +L  +   + + KQ
Sbjct: 445 RVEERTHELKEAKLTADAANHAKSDFLANMSHELRTPLNGILGYAQILART---ASDEKQ 501

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I    + LL L+NDILDL+ ++AG ++L      L   L  V +    K  + +
Sbjct: 502 QRGIDIIYQCGSHLLTLINDILDLSKIEAGKLELQLVPFYLPAFLQSVVEICRIKAEQKS 561

Query: 667 IR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FS 722
           I  I    +      VAD +RL Q+   +L NA+ F+ KGS V  +     GD     F 
Sbjct: 562 IEFIYQPPENSAMGIVADEKRLRQVLINLLGNAIKFTDKGS-VTFRVEVLLGDITNLRFY 620

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +++ G  +     + +F  F  V ++ R Q  G GLGL+I + F+ L    + + S
Sbjct: 621 IQDTGIGMSPQQLEKIFLPFEQVGDSKR-QSEGTGLGLAISQRFVELMASKIQVES 675


>gi|94264256|ref|ZP_01288050.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455301|gb|EAT05508.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 16/251 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +VRAE    E     + A+  K+ F+ ++S+E+R+P+  +IG   LL       L+ +Q 
Sbjct: 154 AVRAEELAREA----QSANIAKSEFLANMSHEIRTPMNGVIGMASLLLAE---DLSDEQR 206

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y + I +S   LL L+N ILD + ++AG ++L+       +L+ EV   +  +    NI
Sbjct: 207 SYAQIIISSGQALLELINQILDFSKIEAGRLELDCRPFSPRELVQEVAVLLQPQAAAQNI 266

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI 720
            +   +S G       D  RL Q+   ++ NA+ F+  G   +         A  +    
Sbjct: 267 TLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELSPAPADPAAPHCSLH 326

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F+VK++G  IP +    +F RF  V  +   +  G GLGL+I    + L GG + + S +
Sbjct: 327 FAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVESEE 386

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 387 GKGSTFWFTVP 397


>gi|332712429|ref|ZP_08432355.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332348724|gb|EGJ28338.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1156

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 13/232 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L+  D++KN F+ + S+ELR+PL  +I   + L     G L SK +  +  I+
Sbjct: 445 LEAKNTELQHLDQLKNEFLANTSHELRTPLNGMISIAESLMDGVAGQLPSKANANLAIIA 504

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKV 671
           +S   L NLVND+LD + +    ++L    + L ++ N +    QS+  K     I   +
Sbjct: 505 SSGKRLGNLVNDLLDFSKLKHKHLELQIKPVSLREIANLILGHSQSLIGKKPLQLIN-SI 563

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN-GDFIFSVKNN 726
            +D  L    AD  RL QI   ++ NA+ F+  G   +    L  + D     + +V + 
Sbjct: 564 AADMPLVD--ADENRLQQIIYNLIENAIKFTESGKVEVSAEQLPVSNDELPMLVITVSDT 621

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  IP D    +F+ F  V  +   +  G GLGL++    + LHGG + + S
Sbjct: 622 GIGIPADKLNRIFDSFESVDCSRTKEYGGRGLGLAVTRQLVELHGGKIHVRS 673


>gi|327538058|gb|EGF24748.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 638

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 120/240 (50%), Gaps = 7/240 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++TD    E++L +  +A   A+  +  F+ ++S+E+R+P+  I+G  D+L+     
Sbjct: 240 TMQDITDRKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDHLRD 299

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             N    Q V+ I  +   LL ++NDILDL+ +DAG +++    +  + ++ EV+  +  
Sbjct: 300 PDNL---QVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDV 356

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +  E  + +++  DG + + +  D  R+ QI   ++ NA+ F+ +G   + ++    N  
Sbjct: 357 RAAEKKLPLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDEGVVRLTVRFDEANSC 416

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V + G  I  D    +F+ FV   +   R   G GLGL+I     +   G V + S
Sbjct: 417 LQFHVIDTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVES 476


>gi|330808143|ref|YP_004352605.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376251|gb|AEA67601.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +   A   AD  K SF+  +S+E+R+P+  +IG T+LL  S   +L+ +Q + + 
Sbjct: 217 EQVLNQAKNAAEDADRSKTSFLATMSHEIRTPMYGVIGATELLARS---ALDPEQRRLLT 273

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S   LL+L+++ILDLA ++AG ++L      +  L++   + I   + +  I ++ 
Sbjct: 274 TIHSSGRTLLSLIDNILDLAKIEAGKLELKPRVFEVRALVSSCMELIRQNIQDKPIVLEA 333

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNG 727
                +   V  D   L QI   +L NA  F+  G   +L      G      FS+++ G
Sbjct: 334 QFSPDVPPLVKTDMDCLRQILINLLGNAGKFTEAGKISLLVTTSGYGSQAWLDFSIRDTG 393

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +   ++F  F        +R  G GLGLSI ++ +    G +S +S     +T +
Sbjct: 394 IGIPTERQDNLFKPFAQFKGPASQRFTGSGLGLSICKNLLEAQQGTLSFTSEPGVGSTFS 453

Query: 786 CRIP 789
             +P
Sbjct: 454 FSLP 457


>gi|309804859|ref|ZP_07698921.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165798|gb|EFO68019.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
          Length = 593

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++ 
Sbjct: 349 QKNENEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIA-PQFLGVIQNETERMIR 407

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---IKVISDGKLGS 679
           ++ND+L+L+ +D G++K++   + LND L+ +       +  + ++   I+ I   +   
Sbjct: 408 MINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALW 467

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  +++Q+   I++NA+ +S  G  + ++  + +   I SV + G  IP      +F
Sbjct: 468 VEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRKDLSRIF 527

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A   ++ G GLGL+I +  +  H G +   SS+   +T    IP
Sbjct: 528 DRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 579


>gi|257129263|gb|ACV42481.1| putative adenylate/guanylate cyclase [Lyngbya majuscula 19L]
          Length = 1156

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 13/232 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L+  D++KN F+ + S+ELR+PL  +I   + L     G L SK +  +  I+
Sbjct: 445 LEAKNTELQHLDQLKNEFLANTSHELRTPLNGMISIAESLMDGVAGQLPSKANANLAIIA 504

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKV 671
           +S   L NLVND+LD + +    ++L    + L ++ N +    QS+  K     I   +
Sbjct: 505 SSGKRLGNLVNDLLDFSKLKHKHLELQIKPVSLREIANLILGHSQSLIGKKPLQLIN-SI 563

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN-GDFIFSVKNN 726
            +D  L    AD  RL QI   ++ NA+ F+  G   +    L  + D     + +V + 
Sbjct: 564 AADMPLVD--ADENRLQQIIYNLIENAIKFTESGKVEVSAEQLPVSNDELPMLVITVSDT 621

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  IP D    +F+ F  V  +   +  G GLGL++    + LHGG + + S
Sbjct: 622 GIGIPADKLNRIFDSFESVDCSRTKEYGGRGLGLAVTRQLVELHGGKIHVRS 673


>gi|257093441|ref|YP_003167082.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045965|gb|ACV35153.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 681

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 8/235 (3%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EA R A   K+ FV  +S+ELR+PL  I+GF  +L       L +    YV  I  S 
Sbjct: 292 RDEAER-ASRAKSDFVSRMSHELRTPLNAILGFAQVLDRE---PLQASHQDYVRLIMRSG 347

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGK 676
             LL LVN +LDLA ++AG + L          + EV   +A +  +  +  I  +++  
Sbjct: 348 QHLLELVNQVLDLAKIEAGRLTLEAIVFDFRQTIAEVGGIVAQRAADKGLDFIPKVAEDL 407

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
               + D  RL Q+   + +NA+ F+  GS  +   A D    +FS+++ G  + E    
Sbjct: 408 PSHVIGDPTRLRQVLINLTANAVKFTEAGSVELAIDAHDQ-RLLFSIRDTGIGMDEAALG 466

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  F        R+  G GLGL I    +   GG + + S     +     +P
Sbjct: 467 RLFLPFGQGDESITRKYGGTGLGLMIARELVQAMGGEIEVDSKPGAGSCFRFSLP 521


>gi|300774227|ref|ZP_07084094.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300758906|gb|EFK55735.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 711

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 14/246 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSK---QS 607
           ER L E+     K  E K   +  +++E+R+P+ ++IG  DLLK  + L +   K   +S
Sbjct: 322 ERKLIEEKLYANKLAEEKTDTIAEITHEIRTPINSLIGIIDLLKKKENLYTDKDKLLLES 381

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y    + S TI     NDIL+L+ VD     L  S   +NDLL +V +    +    N+
Sbjct: 382 AYSSIQNTSKTI-----NDILNLSKVDDSSNNLLLSNFDINDLLMDVVEQNRNQAELKNL 436

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVK 724
           +IK + +  L + + +D  ++  I + +LSN++ +S KG T+      DN     I +V+
Sbjct: 437 QIKYVKEKGLRTIIYSDEFKIRHILNNLLSNSIKYSQKG-TITSSVMIDNKSSQLILTVE 495

Query: 725 NNGSSIPEDMCKSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  I  D+ K++F + F  N +     GVGLGL I++  +N   G +S +S     TT
Sbjct: 496 DQGIGISADLEKTIFRKYFTVNKNNKVEGGVGLGLFILQKLVNSLNGKISFTSQSNVGTT 555

Query: 784 INCRIP 789
               IP
Sbjct: 556 FTITIP 561


>gi|153871221|ref|ZP_02000448.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072313|gb|EDN69552.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 711

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 124/244 (50%), Gaps = 7/244 (2%)

Query: 555 LTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           + E  +A +KA+E    K+ F+ ++S+ELR+P+  I+G+T++L+       N    Q ++
Sbjct: 188 IMELKQAKKKAEEANISKSLFLANMSHELRTPMNTIVGYTEMLEEEIKECPNPNLLQDIK 247

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I A++  LL LV+ ILD++ ++AG + L      L  ++     +I   + +    +++
Sbjct: 248 SIHAAAKHLLGLVDGILDISKIEAGKIHLYSERFDLKTMIQNTITTIQPIIEKKANALQI 307

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI-FSVKNNGSS 729
             D  LG    D  ++ QI   +LSNA  F+ +G  T+ ++  R  GD+I   V + G  
Sbjct: 308 SFDEDLGEAYTDLTKVRQILINLLSNASKFTDQGIITLEVRRQRTQGDWITIRVSDEGIG 367

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +   ++F  F        R+  G GLGL+I + F  + GG + I S     +    R
Sbjct: 368 MTNEQQANLFQVFTQADASISRKYGGTGLGLAITKHFTQMLGGTIHIESEFGKGSHFKVR 427

Query: 788 IPSK 791
           +P++
Sbjct: 428 LPAQ 431


>gi|78046084|ref|YP_362259.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034514|emb|CAJ22159.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 769

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 94  EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSVDQRDMLQ 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 151 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLRLSL 210

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 211 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 270

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 271 GIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 330

Query: 785 NCRIP 789
              IP
Sbjct: 331 WFEIP 335


>gi|285018087|ref|YP_003375798.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473305|emb|CBA15810.1| probable two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 1097

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 10/246 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L  V++ +    E  L E  +   +A+  K+ F+  VS+E+R+PL   +G  +LL  S
Sbjct: 484 VLLGLVDINERKANEMLLMEAKQTADEANRAKSMFLAIVSHEIRTPLHGAMGHLELLSRS 543

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+ +Q ++V+ I  S   LLNLVN +LD   ++A  +K+N   +  N++L    +S
Sbjct: 544 ---PLSFEQGEWVDMIRRSFDALLNLVNALLDSTKLEANALKINPVQMSPNEVLERCARS 600

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
               + +  +    ++D  L + +  D QRL QI   +L NA  F+ +GS +I    LK 
Sbjct: 601 FGASILQGGVAFYCVTDPDLDAMLEGDDQRLAQILQNLLGNAAKFTERGSIMISSRCLKQ 660

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           A       F V + G  IP  M  ++FN          RR  G GLGL +  +  +L GG
Sbjct: 661 ADGELWARFEVADTGIGIPASMQSAIFNPLAQADDSISRRFGGTGLGLFLCRNLSHLMGG 720

Query: 771 HVSISS 776
            +S+ S
Sbjct: 721 RISVRS 726


>gi|213161958|ref|ZP_03347668.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 725

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 123/233 (52%), Gaps = 16/233 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+E K++F+  +S+E+R+PL  I+G   LL    L + N +    ++ I+ S   LL +
Sbjct: 440 KANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMA-NYRDD--LQAINDSGESLLAI 496

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLG 678
           +NDILD + ++ G      + + +++   E +Q + + +H  + R++V      S+    
Sbjct: 497 LNDILDYSAIEVG-----GTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 551

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   D +R+ QI   +LSNA  F+ +GS ++L+   D+  +   V++ G  IPE    ++
Sbjct: 552 TLQGDPRRIRQIVINLLSNAAKFTDRGS-IVLRTFCDDQSWFIEVEDTGCGIPEAKLTAI 610

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  FV     G R G GLGL+I  S     GG ++++S+    +    ++P +
Sbjct: 611 FKPFVQAT--GCRGGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLPVR 661


>gi|21241265|ref|NP_640847.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106582|gb|AAM35383.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 769

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 94  EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 151 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLRLSL 210

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 211 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 270

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 271 GIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 330

Query: 785 NCRIP 789
              IP
Sbjct: 331 WFEIP 335


>gi|78046490|ref|YP_362665.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926044|ref|ZP_08187408.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|78034920|emb|CAJ22565.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543570|gb|EGD14989.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 636

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+   S+ELR+PL  I+G+  +L+   +        +++++I  +   LL L+
Sbjct: 272 ANRAKTEFLSRSSHELRTPLNAILGYAQVLE---MDLPEPGHRRHLQHILGAGRHLLGLI 328

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ++LD+A ++A  + L+   + +   ++E    IA    ++ I ++  S     +  AD 
Sbjct: 329 TELLDIARIEADQLDLSPEPVSVRAAVHEALGLIAPDADKHGIALQPASIDGPWTVRADA 388

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QRL Q+   +LSNA+ F+  G  V + A  D      +V + G+ +       +F  F  
Sbjct: 389 QRLRQVLLNLLSNAVKFNRTGGQVQVSAQADGEQVRITVADQGAGLTPAQIDRLFTPFER 448

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             A R    G GLGL++ +  I   GG + + SS +G 
Sbjct: 449 LGAERSAVEGTGLGLALSKRLIEAMGGQIGVHSSSDGA 486


>gi|319954446|ref|YP_004165713.1| multi-sensor signal transduction histidine kinase [Cellulophaga
            algicola DSM 14237]
 gi|319423106|gb|ADV50215.1| multi-sensor signal transduction histidine kinase [Cellulophaga
            algicola DSM 14237]
          Length = 1083

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 17/261 (6%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q +L + N++D  R E  +    +  ++ +E+K+ F+   S+E R+PL+ ++  T+L++ 
Sbjct: 829  QALLVYNNISDQKRVEVEIRNTLQKEKELNELKSRFISMASHEFRTPLSTVLSATNLIER 888

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNE 653
                    K+ +Y+  I  S   L+ ++ND L L+ ++ G      + +  +  +D L E
Sbjct: 889  QNEAGQEEKRIKYISKIKTSIKNLVGILNDFLSLSKLEEGKVIAQPILFDFVEFSDALVE 948

Query: 654  VKQSIATKMHENNI-----RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
              Q I     E  I      I+V  D KL         L  I   +L+NA+ +S + + +
Sbjct: 949  ELQGIKKTGQEMAIVYSSYSIQVQLDPKL---------LRHIVHNLLTNAIKYSEENTKI 999

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            +L  +  N      V + G  IP++    +F RF    +    +G GLGL+IV+ ++ L 
Sbjct: 1000 LLIISTKNKKLFIEVTDQGIGIPDEDQGYLFQRFYRAKNATNFQGTGLGLNIVQQYVLLM 1059

Query: 769  GGHVSISSSDEGVTTINCRIP 789
             G++S  S     TT    +P
Sbjct: 1060 RGNISFQSKLNHGTTFIVELP 1080


>gi|269103459|ref|ZP_06156156.1| aerobic respiration control sensor protein ArcB [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163357|gb|EEZ41853.1| aerobic respiration control sensor protein ArcB [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 788

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 119/250 (47%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    EA  KA   K SF+  +S+ELR+PL  I+G + +L  S+   L   Q  Y
Sbjct: 264 RDITERKRYEEAQEKASRDKTSFISTISHELRTPLNGIVGLSRMLLESE---LTEDQRNY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S+  L N+ NDI+DL   D   ++L    + L + + E+    A    +  +R 
Sbjct: 321 LRTIHISAITLGNIFNDIIDLDKSDRRRLELLPKPLDLPEFITEIGNISALMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKN 725
            +    +L   +  D  RL Q+   ++ NA  F+ +G  ++    +   D     F V++
Sbjct: 381 DLEQLTQLPKMIEVDGTRLRQVLWNLMGNATKFTKQGGVILSVSCEVEADQAHIQFEVED 440

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSSD-EG 780
           +G  IP     ++F  +     +G       G G+GL++    + L  G +++SS + EG
Sbjct: 441 SGIGIPAGELDNIFAMYY-QVQQGDDNLHAVGTGIGLAVSRQLVQLMNGDITVSSEEGEG 499

Query: 781 VT-TINCRIP 789
            T T+N  +P
Sbjct: 500 STFTVNITVP 509


>gi|229175569|ref|ZP_04303079.1| hypothetical protein bcere0006_46470 [Bacillus cereus MM3]
 gi|228607965|gb|EEK65277.1| hypothetical protein bcere0006_46470 [Bacillus cereus MM3]
          Length = 362

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 131/245 (53%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL+   +  SL  +Q ++ 
Sbjct: 121 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDE--SLTKEQIKHF 178

Query: 611 EYISAS-STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             I+ + S  L +L++++ ++  ++ G++KL+   I +N+LL ++ + +   + ++++  
Sbjct: 179 STIAYTKSQRLESLIDELFEITRMNYGMLKLDTKPIDINELLIQLDEELYPLLEKHHLEA 238

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V +    DN + +  V N G S
Sbjct: 239 RLNVDSHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDMNGYIDNEEVVVQVINYGDS 297

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 298 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNIVRTVFEVR 356

Query: 788 IPSKE 792
           +P  E
Sbjct: 357 LPKDE 361


>gi|229089400|ref|ZP_04220672.1| hypothetical protein bcere0021_2490 [Bacillus cereus Rock3-42]
 gi|229182668|ref|ZP_04309910.1| hypothetical protein bcere0004_2520 [Bacillus cereus BGSC 6E1]
 gi|228600808|gb|EEK58386.1| hypothetical protein bcere0004_2520 [Bacillus cereus BGSC 6E1]
 gi|228693934|gb|EEL47625.1| hypothetical protein bcere0021_2490 [Bacillus cereus Rock3-42]
          Length = 314

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 132/264 (50%), Gaps = 10/264 (3%)

Query: 535 NAQTML------TFVNVTDSVRAERALTEKNE-ALRKADEIKNSFVQHVSYELRSPLTNI 587
           N QT L      +F N+  S+    A  EK     ++++E +   +  +S+++R+PLT+I
Sbjct: 45  NLQTRLFTSNDQSFHNIVFSINELIAELEKVRIKAKRSEESRKQLLSSISHDIRTPLTSI 104

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG+ D LK     S   KQ +Y++ +   S  L +LV++I ++A +DA    L    +  
Sbjct: 105 IGYIDALKDGVATSEIEKQ-EYLKILYMKSNNLKHLVDEIFNMAKLDANEFPLKEEKLDF 163

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++  EV      ++ ++NI+++V+        +AD   L++I   ++ NA+ +   G  
Sbjct: 164 SEVTREVLIEFLPEISKHNIKLQVLMPESTCPIIADHLSLMRIIGNLMKNAIYYGKDGKI 223

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQR-RGVGLGLSIVESFI 765
           + ++    +  +   + + G  IP+   ++VF R + S   R     G GLGLSI ++ +
Sbjct: 224 IGVELLETDAAYELLIWDKGPGIPKHDLQNVFERMYRSEQSRNSSFGGSGLGLSISKALV 283

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             +GGH+ + S     TT    IP
Sbjct: 284 ERNGGHIWVESIPWERTTFGFSIP 307


>gi|218887072|ref|YP_002436393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758026|gb|ACL08925.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1058

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 11/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAE  L    E    A   K  F+ ++S+E+R+PL  I+G   LL+T    ++   ++ Y
Sbjct: 596 RAESELRCAKEVAEAASRTKGEFLANMSHEIRTPLNGIMGMLQLLQTDPPKAM---RTVY 652

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V   + S   L  L+ DILDL+ ++AG ++L+        +L+EV+        E  + +
Sbjct: 653 VGAATQSCRRLGLLLGDILDLSRIEAGKLELHDEPFEARAVLDEVRGLFEGPAAERGLTL 712

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG-DFIFSV 723
           +V  D ++   +  D  RL Q+   ++ NA+ F+ +G  V+    ++A+R  G   +F+V
Sbjct: 713 RVSVDERIPRHLRGDAMRLRQVLFNLVGNAVKFTDQGEVVVEAWRVQASRSRGCRVVFTV 772

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I E+  K +F  FV       RR  G GLGL IV   + L  G V++ S+    
Sbjct: 773 RDTGIGIAEERLKDIFEPFVQAETASTRRYQGAGLGLPIVRRLVRLMCGTVTVESTPGAG 832

Query: 782 TTINCRIP 789
           T  +  +P
Sbjct: 833 TAFSVSLP 840


>gi|171912499|ref|ZP_02927969.1| PAS/PAC Sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 684

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 122/256 (47%), Gaps = 12/256 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T+  RAE+ L E  +    A   K+ F+  +S+ELR+PL  ++    LL +    +
Sbjct: 286 LTDLTERKRAEQELKEARDQALAASGAKDEFLARLSHELRTPLNPVL----LLASEAADN 341

Query: 602 LNSKQSQYVEYISASSTILL--NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +       ++ +    + L   L++D+LD+  +  G + L    + L+D++ +   S+ 
Sbjct: 342 PHLPDEVRADFHTIRKNVDLEARLIDDLLDVTRISRGKLSLELRRVDLHDVVRDAFTSVK 401

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +  +  +R+++  DG+    + D  RL QIF  +L+NA+ F+  G  +++         
Sbjct: 402 GEADKKRLRLQLSLDGESPYVLGDAVRLQQIFWNLLNNAVKFTPDGGRIVVATQIKEAWV 461

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH-----RGQRRGVGLGLSIVESFINLHGGHVSI 774
              V+++G  + ++   SVF+ F    H       Q  G+GLGL+I    + +H G +S 
Sbjct: 462 TVEVQDDGIGLSKEELTSVFDAFAQGEHSWPNGSHQFGGLGLGLAISRMLVEMHSGEISA 521

Query: 775 SSSDEGVTTI-NCRIP 789
           SS       I   RIP
Sbjct: 522 SSPGRDAGAIFRVRIP 537


>gi|154487501|ref|ZP_02028908.1| hypothetical protein BIFADO_01356 [Bifidobacterium adolescentis
           L2-32]
 gi|154084019|gb|EDN83064.1| hypothetical protein BIFADO_01356 [Bifidobacterium adolescentis
           L2-32]
          Length = 330

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +  E  E L+ AD+++   V +VS+ELR+P++ +    + +    +    S     +E I
Sbjct: 89  SFNEMAEELQHADQMRRDMVANVSHELRTPVSALQAMVENMADGVVEPTPSN----LESI 144

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV 671
              +  L +L+  +LDL+ ++AG   L        D ++E  +   IA   H +NI I V
Sbjct: 145 LNQTHRLSDLIAFLLDLSRMEAGAASLQIDKFNFADFIDETVEPLEIADAGHAHNIEIHV 204

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
             + ++     D+ RL Q+F+ I++NA+  S+  + V+++A   +D G  + +V N GS 
Sbjct: 205 PDNIEME---GDQDRLRQLFTNIIANALKHSADNTAVLIEAHENKDFGTIVTNVVNFGSQ 261

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           IP++    +F RFV        +  G GLGLSI      LHGG V +     G
Sbjct: 262 IPQEARSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVRVVDDPRG 314


>gi|154504470|ref|ZP_02041208.1| hypothetical protein RUMGNA_01974 [Ruminococcus gnavus ATCC 29149]
 gi|153795245|gb|EDN77665.1| hypothetical protein RUMGNA_01974 [Ruminococcus gnavus ATCC 29149]
          Length = 528

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 557 EKNEALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           ++ EAL +A  ++++ + ++ +S++LR+PLT+I G   +L  S       KQ Q  + I 
Sbjct: 286 KREEALAQAKNEQLRANLLRSISHDLRTPLTSISGSAGILLNSASALGEEKQKQLYKGIY 345

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L+NLV ++L +  ++ G M LN    ++++++    + I+     ++  +K I  
Sbjct: 346 DDSMWLINLVENLLSVTRLEDGTMNLNLQIELVDEVIEGALKHISRD--HSDYELKFIHS 403

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +L     D + ++Q+   I+ NA+ ++ KGS + + A ++N     S+ +NG  I +  
Sbjct: 404 EELLLAKMDSRLIIQVIINIVDNALKYTPKGSKIEIYARKENQMIAISIADNGKGIADCA 463

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
            + +F+ F +   +    RRG+GLGL + +S I  HGG + ++
Sbjct: 464 KEKIFDMFYTADSKVADSRRGLGLGLFLCKSIIQAHGGTIQVA 506


>gi|186474904|ref|YP_001856374.1| histidine kinase [Burkholderia phymatum STM815]
 gi|184191363|gb|ACC69328.1| histidine kinase [Burkholderia phymatum STM815]
          Length = 547

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 136/293 (46%), Gaps = 38/293 (12%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           AA + SFD  R +L G     +DS L   I P            +  +VRA   L    E
Sbjct: 87  AAAVQSFDKVR-ALDGG----ADSYLTEPIEP----------AELVANVRALLRLHRAEE 131

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK------QSQYVEYIS 614
           ALR AD  K+ F+  +++ELR+PL  I    +L+      + ++         + VE++S
Sbjct: 132 ALRDADRRKDQFLATLAHELRNPLAPIRNAVELMDPRYHAAEDAVCHARMIARRQVEHLS 191

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQS-IATKMHENNIRIK 670
                   LV+D+LD++ +  G + L    + L+  +    E  Q  IATK H   +R+ 
Sbjct: 192 -------RLVDDLLDVSRITHGKIALQRECVHLDAAVATAVEANQPFIATKQH--TLRVN 242

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V     +     D  R+ Q+ S +LSNA  ++ +G  + L  +  +G     V++NG  I
Sbjct: 243 VPKSACM--IYGDPIRVAQVISNLLSNAAKYTPEGGVIELDVSAADGSVTVRVRDNGIGI 300

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           P +    VFN F+ +     R   G+G+GLS+ ++   LHGG +   S   G+
Sbjct: 301 PPNELADVFNLFMQSEDSLARSEGGLGIGLSLAKTLTELHGGTIEAFSGGLGM 353


>gi|94263712|ref|ZP_01287520.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455911|gb|EAT06070.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 16/251 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +VRAE    E     + A+  K+ F+ ++S+E+R+P+  +IG   LL       L+ +Q 
Sbjct: 149 AVRAEELAREA----QAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAE---DLSDEQR 201

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y + I +S   LL L+N ILD + ++AG ++L+       +L+ EV   +  +    NI
Sbjct: 202 SYAQIIISSGQALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLLQPQAAAQNI 261

Query: 668 RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFI 720
            +   +S G       D  RL Q+   ++ NA+ F+  G   +         A  +    
Sbjct: 262 TLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEVGGVAMELSPAPADPAAPHCSLH 321

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F+VK++G  IP +    +F RF  V  +   +  G GLGL+I    + L GG + + S +
Sbjct: 322 FAVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVKSEE 381

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 382 GKGSTFWFTVP 392


>gi|310641469|ref|YP_003946227.1| response regulator receiver:ATP-binding region,
           atpase-like:histidine kinase, hamp region:histidine
           [Paenibacillus polymyxa SC2]
 gi|309246419|gb|ADO55986.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Paenibacillus polymyxa SC2]
          Length = 577

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 161/297 (54%), Gaps = 33/297 (11%)

Query: 514 LQGTLELLSDSVL-----------EYSII--PLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           L+ T+E L+D VL           E+S +   L N Q  L   N      AE   T K E
Sbjct: 11  LRRTVEQLTDEVLKSKAEEEKLLNEFSAMNNELVNLQRQLAKSN------AELKRT-KEE 63

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A+R A+++K++F+  VS+E R+P+  I+G  ++L +SK   L+  Q Q +  I  S+++L
Sbjct: 64  AIR-ANDLKSTFLAVVSHEFRTPMNGILGMIEMLASSK---LSPDQRQAIGVIRESASLL 119

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           LN++N++LD++ V+AG M+L    + +  +++ V Q +  ++++   ++ + +D  +   
Sbjct: 120 LNMINNLLDISKVEAGQMELEIGNVRVQAIMSHVAQLLEPQIYQMGNQLSIETDPGVAEH 179

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI-PEDM 734
           +  D  R++QI   +L+NA  F+S+G+ V+    ++  +D+    F V+++G  I PED 
Sbjct: 180 LEGDSARIMQILLNLLNNANKFTSEGNLVVRTKLVEETKDSQRVRFEVQDSGIGISPEDQ 239

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            K +F  +V     G  Q  G GLGL I  SF+ L  G + + S +   +T    IP
Sbjct: 240 DK-LFQPYVQAGEGGASQYGGTGLGLWICSSFVKLMQGEIGVVSEEGQGSTFWFEIP 295


>gi|255012067|ref|ZP_05284193.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 3_1_12]
 gi|313149910|ref|ZP_07812103.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138677|gb|EFR56037.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 769

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T S R  R L E N+      E +   +  ++++ ++PL +IIG+TDLL  S L + +
Sbjct: 247 DITRSNRYRRELEEANKRAEALLEAREKLMLAITHDFKAPLGSIIGYTDLL--SGLTT-D 303

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y++ + +SS  LL LV+D+LD   +D    ++N  T     L  E++ S      
Sbjct: 304 ERQRFYLDNMKSSSQHLLKLVSDLLDFHRLDLNKAEVNRVTFNPAQLFEEIRVSFKPLTD 363

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             ++ +    D +L G F++D  R+ QI + +LSNA+ F+ KG+ + L     +      
Sbjct: 364 AKHLALDYSIDSELDGRFISDPLRIRQIVNNLLSNAVKFTVKGN-IALNVTYHSSSVRIE 422

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           V + G  +     + +F  F          G GLGLSIV   + L  G +S+ S+
Sbjct: 423 VADTGKGMAPGDREKIFQEFTRLPGAQGEEGFGLGLSIVHKLVTLLEGSISVQST 477


>gi|86146520|ref|ZP_01064843.1| sensor histidine kinase [Vibrio sp. MED222]
 gi|85835783|gb|EAQ53918.1| sensor histidine kinase [Vibrio sp. MED222]
          Length = 818

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 126/231 (54%), Gaps = 13/231 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     L+++Q ++++ +  S   ++ L+N+I
Sbjct: 343 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LSTEQEKHLKSLYDSGDHMMTLLNEI 398

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G + L+ +   L+ ++  +     T   E  ++ KV S+   G  + +D+ R
Sbjct: 399 LDFSKIEQGRLDLDETRFPLDSIIGSINSVYYTLSSEKGLQFKVYSEVPSGRWYFSDKAR 458

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFV 743
           L QI   +L+NA+ F+S+G   V LK   +  D   S  V++ G  I ++  K +F  F 
Sbjct: 459 LRQILFNLLNNAVKFTSRGFVEVYLKEVVEGSDTYLSIRVRDTGIGISKEAQKRIFKPFE 518

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPSK 791
                  RR  G GLGL+IV+    L  G +S+ +S+EG+ T+ + R+  K
Sbjct: 519 QAESSTTRRFGGTGLGLAIVKKIAQLMEGSISV-TSEEGIGTSFDVRLKIK 568


>gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
 gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
          Length = 1221

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 124/258 (48%), Gaps = 15/258 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ + V+  + L +       A++ K++F+  +S+E+R+P+  +IG  D+L  +   SL+
Sbjct: 540 DMREHVKIRQDLEQARHEAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLDQT---SLS 596

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q +  + I  S+  LL ++ DILD + ++AG +++  + I L  ++     ++     
Sbjct: 597 TYQREMTDLIRESAFALLEIIEDILDFSKIEAGRLEIEQTPISLEKVVERACGTLTHMAA 656

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------N 716
              + + +  D  L   V  D  RL QI   +++NA+ FSS  S +   A R       +
Sbjct: 657 SKEVELTLFVDPALPEGVLGDALRLRQILINLINNAIKFSSGMSRLGRVAVRASPAEEVD 716

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           GD +   F V +NG  + +   + +F  F        RR  G GLGL I    + L  G 
Sbjct: 717 GDVVTVMFQVIDNGIGMDDAARERLFTPFSQGDASTTRRFGGTGLGLIICRRLVELMKGE 776

Query: 772 VSISSSDEGVTTINCRIP 789
           +S+ S  +  +    RIP
Sbjct: 777 ISVESKPDVGSVFTVRIP 794


>gi|163792977|ref|ZP_02186953.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181623|gb|EDP66135.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 388

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 12/247 (4%)

Query: 554 ALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           ++++ NEAL  AD        I + F  ++++E+R+PL  +IGF ++L     G L ++ 
Sbjct: 128 SMSDGNEAL-DADARHEARGRIADVF-ANLAHEMRTPLNAVIGFGEILVGEHFGPLAARY 185

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y   I  +   LL LVN  LDL    AG   L+   + L  +L      +       +
Sbjct: 186 KDYSRDIVGAGYHLLALVNGALDLGRASAGPDTLDERPVELRAVLTSTIAMLQRSATLKS 245

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKN 725
           I ++V     L    AD  R+ Q+F  ++SNA+ +S  G  V +K    D+G     V +
Sbjct: 246 ITVEVADLAGLPLIYADETRMRQLFVNLVSNAIKYSPVGRGVTIKHWIEDDGQVCIDVVD 305

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  +  D        F    +A R    G GLGL I ++ +  HGG ++I S+    TT
Sbjct: 306 GGVGMSIDEVAIALLPFGRTESAMRTGEAGTGLGLPICKAIVEAHGGRLTIDSAPRRGTT 365

Query: 784 INCRIPS 790
           I+  +P+
Sbjct: 366 ISVVLPA 372


>gi|119493256|ref|ZP_01624096.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119452729|gb|EAW33907.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 491

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVN 625
           E +  FV +VS+ELR+PLT + G+  L  T + G+ L   Q + +E  +  +   + L+ 
Sbjct: 270 EQQRQFVSNVSHELRTPLTIVQGY--LQSTLRRGNNLTPPQREGLEVAANEAERTIRLLQ 327

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+L+LA  D G +        +N LL+EV++ +A +  +  + ++ I  G +    ADR 
Sbjct: 328 DLLELARADHGNLHFQIEPFEVNSLLSEVRE-MAQQFSQGRVHLEKI-QGTI-QVQADRN 384

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
           RL Q+   ++ NA+ +S     + LK  + +     SV + G  IP      +F RF   
Sbjct: 385 RLKQVLLNLIDNAIKYSEPEQPITLKVKQTDKKVYLSVCDQGQGIPLQHQSRIFERFYRV 444

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEG 780
           +  R +  G GLGLSIV++ +   GG V+ +S   EG
Sbjct: 445 DEARTRAGGTGLGLSIVKTIVEGMGGRVTLLSKPGEG 481


>gi|94502158|ref|ZP_01308657.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Oceanobacter sp. RED65]
 gi|94425705|gb|EAT10714.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Oceanobacter sp. RED65]
          Length = 629

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 10/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L + +   ++  + K+ FV  VS+ELR+PL  I+G T+LL      + NSK+S+ 
Sbjct: 240 KARDLLKQADAYEKQQQKYKDQFVASVSHELRTPLNGILGLTNLLVKQ---NPNSKKSKT 296

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+ +LL++VN+ILD + + +G   +    + +    N V   +    H  +I  
Sbjct: 297 IQKIHLSAQMLLDVVNEILDYSKIQSGKFNIELIPVDIQTDFNHVFSVLTHLAHNKDIDF 356

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVK 724
            +  D  + + V +D  RL Q+ + + SNA+ F+++G  V    I   + D+    F   
Sbjct: 357 HIFIDPNIRTRVLSDPLRLQQVINNLCSNAIKFTNQGKVVASIDIEDESVDSLTLHFKFM 416

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I +D    +F  F  +     R+  G GLGL I +  +   GGH+ + S   G +
Sbjct: 417 DTGIGISDDALPHLFEAFKQSDDSVTRQYGGTGLGLFISQQIVKALGGHIEVESRLGGGS 476

Query: 783 TINCRIPSKE 792
           T    +  K+
Sbjct: 477 TFEFTLTMKK 486


>gi|17646117|gb|AAL40903.1|AF145974_1 ethylene receptor [Petunia x hybrida]
          Length = 753

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 126/263 (47%), Gaps = 32/263 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  + LL+ +  
Sbjct: 328 ESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 385

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   VE I  SS +L  L+ND+LDL+ ++ G + L+  T  L+ L  EV   I 
Sbjct: 386 -DLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLLLDIGTFNLHALFREVLSLIK 444

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  +   +     L  +V  D +RL+QI   ++ NA+ FS +GS  I         
Sbjct: 445 PITSVKKLFATLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKEGSVSISAFVAKSES 504

Query: 710 LKAARDNGDFIFS----------VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           L+  R    F             VK+ G  I +    ++F++F  +     +   G GLG
Sbjct: 505 LRDPRAPEFFAVPSENHFYLRVQVKDTGVGINQQDIPNLFSKFAQSEALTTKNSDGSGLG 564

Query: 758 LSIVESFINLHGGHVSISSSDEG 780
           L+I + F+NL  GH+ I S   G
Sbjct: 565 LAICKRFVNLMEGHIWIESDGLG 587


>gi|295133859|ref|YP_003584535.1| sensory transduction histidine kinase [Zunongwangia profunda
           SM-A87]
 gi|294981874|gb|ADF52339.1| sensory transduction histidine kinase [Zunongwangia profunda
           SM-A87]
          Length = 414

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 124/247 (50%), Gaps = 13/247 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE  + E     R+ +E+K  F+  VS+E ++PLT I+  T L+          K+ +++
Sbjct: 175 AENKIKESLRKERELNELKTKFLSMVSHEFKTPLTGILTSTTLIGKYTESEQQQKREKHL 234

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+     L N+++D L +  ++ G +   YS   L   LNEV       +++ N+ +K
Sbjct: 235 KTITGKVKYLNNILDDFLSVERLETGKVSYKYSYFPLTKTLNEV-------IYDANMLLK 287

Query: 671 ----VISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
               ++   ++   V   D + L  I S +++NA+ +S + S + ++A  +       +K
Sbjct: 288 EGQEILYPKQIDDIVLYFDEKILELILSNLINNAIKYSPEHSVIEVEAYEEGEMVHVCIK 347

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IPE+  K +FNR+    +    +G G+GL+I++S +   GG +S  S     +T 
Sbjct: 348 DQGIGIPENEQKYIFNRYFRAENALTNQGTGIGLNIIKSHLENVGGSISFKSKQHLGSTF 407

Query: 785 NCRIPSK 791
           + +IP K
Sbjct: 408 HIQIPKK 414


>gi|269137660|ref|YP_003294360.1| sensor histidine kinase/response regulator TorS [Edwardsiella tarda
           EIB202]
 gi|267983320|gb|ACY83149.1| sensor histidine kinase/response regulator TorS [Edwardsiella tarda
           EIB202]
 gi|304557723|gb|ADM40387.1| Sensor protein TorS [Edwardsiella tarda FL6-60]
          Length = 930

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 23/235 (9%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNL 623
           AD  K++F+  +S+E+R+PL  I+G   LL    +    S QS+ YV+ I+ S   LL +
Sbjct: 441 ADRAKSAFLAAMSHEIRTPLHGILGTAQLLAEQPI----SPQSRGYVQAINDSGESLLAV 496

Query: 624 VNDILDLATVDAGIMKLNYSTIVLND-------LLNEVKQSIATKMHENNIRIKV-ISDG 675
           +ND+LD + ++AG      S++VLND       LL+ + +    ++ E  +R+    +D 
Sbjct: 497 LNDVLDYSAIEAG-----SSSVVLNDEPFSPRQLLDSLLRLAEGRLRERPLRLAHDYADA 551

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D +R+ QI   +L+NA+ F+ +G  + +    D   +  +V+++G  I     
Sbjct: 552 LPAWLQGDPRRIRQIVMNLLNNALRFTERG-VICVSCGCDETHWWIAVQDSGCGIDPAQQ 610

Query: 736 KSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++F  FV  +A RG   G GLGL+I         G + +SS+    +    R+P
Sbjct: 611 AAIFQPFVQLSARRG---GTGLGLAICRGLAQAMAGSLELSSTPGKGSRFCLRLP 662


>gi|228915144|ref|ZP_04078741.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228844573|gb|EEM89627.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 312

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGNDGDYIDITAYESNNMIAIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 302


>gi|218281490|ref|ZP_03487933.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989]
 gi|218217412|gb|EEC90950.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989]
          Length = 717

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A   K+ F+  +S+++R+P+  I+G+T+L++ + +G+   K+  Y+  I +SS  LL+
Sbjct: 294 QEASAAKSRFLFSMSHDIRTPMNAIMGYTELMEKN-IGNA-EKEKDYLSKIHSSSKFLLD 351

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N IL++A +++G   LN     + D+L+ +        HE  +  +  +  +      
Sbjct: 352 LINSILEMARIESGKETLNIKACNIFDVLDSLNSVFEKLAHEKGLEYQCTTKIQHPYIYC 411

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L +I   I+ N++ ++ +G  +I     ++G F   +++ G  + E      F  F
Sbjct: 412 DPIKLEEILLNIIGNSIKYTDEGMVLIQIEEGESGQFQCMIQDTGIGMSEAYLPHAFEDF 471

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783
                  Q   +G GLGL+IV+S + L  G + ISS  ++G TT
Sbjct: 472 SREKSGTQTSVKGTGLGLAIVKSLVELMNGTIEISSQVNQGTTT 515


>gi|126739384|ref|ZP_01755077.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126719484|gb|EBA16193.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 857

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 122/239 (51%), Gaps = 10/239 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D + AE+ L +  +     +  K   +  +S+E+R+PLT ++G  DLL+ +      
Sbjct: 333 DISDRIAAEKELLKARDDALAGERAKADLLTVMSHEMRTPLTGVLGAIDLLEGT---GPT 389

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATK 661
           ++Q +Y+  +  S  +LL+ VND+L L++++AG+     S   L  LL  +   QS    
Sbjct: 390 TEQGRYLNAMRVSGELLLHHVNDVLQLSSLEAGMAPQELSDFDLKGLLEGLVDSQSANAG 449

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFI 720
            H N + ++   D     +    + L Q+   ++ NA+ F+  G+ +IL     NG D +
Sbjct: 450 SHGNELILQYALDEAATRYTGSPRALQQVLLNLIGNAIKFTRDGA-IILDVMPGNGADMV 508

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
            F V + G  I  D  + +F+ F++ +A  G+   G GLGL+I    ++  GG ++  S
Sbjct: 509 EFHVSDTGQGIAPDDLERIFDDFITLDASYGRGSEGTGLGLAITRRILHSLGGSITCES 567


>gi|291618633|ref|YP_003521375.1| BarA [Pantoea ananatis LMG 20103]
 gi|291153663|gb|ADD78247.1| BarA [Pantoea ananatis LMG 20103]
          Length = 928

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 15/230 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  ++GFT  +LKT     L + Q  Y+  I  S+  LL
Sbjct: 306 QEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTP----LRTTQRDYMLTIERSANNLL 361

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +++ND+LD + ++AG + L      L   L+E    +A   HE  + + V+ D  +  + 
Sbjct: 362 SIINDVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVVCDNSVPDNV 421

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMC 735
           + D  RL QI   ++ NA+ F+ KG T+ L+  +      + +    V++ G  I E+  
Sbjct: 422 IGDALRLQQILINLMGNAIKFTEKG-TINLRVEQHTITATHVELEIQVRDTGIGISEEQQ 480

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
             +F  F        RR  G GLGL I +  +    G ++ +S  + G T
Sbjct: 481 AQLFQAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGST 530


>gi|153815452|ref|ZP_01968120.1| hypothetical protein RUMTOR_01687 [Ruminococcus torques ATCC 27756]
 gi|317502264|ref|ZP_07960437.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089009|ref|ZP_08337916.1| hypothetical protein HMPREF1025_01499 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847094|gb|EDK24012.1| hypothetical protein RUMTOR_01687 [Ruminococcus torques ATCC 27756]
 gi|316896379|gb|EFV18477.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406461|gb|EGG85974.1| hypothetical protein HMPREF1025_01499 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 468

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+  D+ +   V +VS++ RSPLT+I G+ + +    +        +Y+  I   +  L 
Sbjct: 238 LKDMDDYQKKIVANVSHDFRSPLTSIKGYVEAMADGTIPP--ELYGKYLNIILFETERLT 295

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L  D+L L   D   + LN S   + ++L     S  +   + +I I+++        +
Sbjct: 296 DLTRDLLTLNEFDTKELLLNKSDFDIQEVLKSTAASFESACTQKHISIELLLMPDAVFVL 355

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD++++ Q+   ++ NA+ FS   S + ++ +  N     SVK++G  IP      ++ R
Sbjct: 356 ADKRKIQQVLYNLIDNAIKFSENDSLITVEVSEKNEKVFISVKDHGIGIPRQEQTKIWER 415

Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  S+  RG+ ++G GLGLSIV+  I  H  H+++ S+ EGV T
Sbjct: 416 FYKSDLSRGKDKKGTGLGLSIVKEIIQAHDEHINVVST-EGVGT 458


>gi|291565905|dbj|BAI88177.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39]
          Length = 1040

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 11/163 (6%)

Query: 555  LTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            L  KN+AL++A       +  K+ F+ ++S+E+R+P+  I+GF DLL+         +Q 
Sbjct: 860  LEHKNQALKEATRHAEAANRAKSEFLANMSHEIRTPMNAILGFCDLLQGL---VAEPRQK 916

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            QYV+ I AS   LL L+NDILDL+ ++AG M+L+   + L  +L E+ Q    K  E  +
Sbjct: 917  QYVKSIGASGKTLLALINDILDLSKIEAGKMELHQEPMDLRVMLEEIYQIFCQKAAEKKV 976

Query: 668  RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
             + + I+D    + + D  RL QI   ++ NA+ F+  GS  +
Sbjct: 977  ELIIEINDDLPKAIIFDEVRLRQILLNVVGNALKFTDNGSVKV 1019


>gi|291443482|ref|ZP_06582872.1| two-component sensor [Streptomyces roseosporus NRRL 15998]
 gi|291346429|gb|EFE73333.1| two-component sensor [Streptomyces roseosporus NRRL 15998]
          Length = 381

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 9/240 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T  VR         EA R+ +      +  V++ELRSPLT++ GFT  L        + +
Sbjct: 129 TGPVRRVVVCLRGTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQ 188

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           +   +E + A +  +  L+ ++LD++ +D+G ++L    + ++  +    Q++ T     
Sbjct: 189 KRLMLETVDADAGRVTRLIAELLDISRIDSGRLELRRQPVDISAAVARHIQALITGGQAA 248

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG----DFI 720
             R  V + G L    AD  ++ Q+   +L NA+       T+ I  AA   G       
Sbjct: 249 E-RFLVRTRGPLPDLWADPDKVDQVLGNLLENAVRHGEGTVTIEIAPAAAPGGCDEMGTA 307

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +V + G  IPE+    VF RF   + RG   G GLGL IV+  +  HGG +++     G
Sbjct: 308 VTVSDEGPGIPEESMSRVFTRFWRGSKRG---GTGLGLYIVKGIVEAHGGTITVDRGPRG 364


>gi|330957172|gb|EGH57432.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 595

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 130/282 (46%), Gaps = 14/282 (4%)

Query: 510 ERKSLQGTLELLSDS-VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADE 567
           ER      +E+ S+S +L YS+ P+ + +  +L  V V   V  +RA           + 
Sbjct: 325 ERAPEDLAIEIDSESRLLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ER 374

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +++ FV   S+ELR+P+T +     LL+     +  S+++  +  ++     L+ L+ND+
Sbjct: 375 VRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDL 434

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L+ +    G+ KL  +   +  LL E K     +  E +I + +     +    AD+ +L
Sbjct: 435 LNFSRYQNGLQKLKLAPCSVEALLEEAKARFEEQALEQDIVLMLEVQEPMPRLHADQSQL 494

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            ++   +L NA+  +     + L+A R     I SV++NG  I       +F  FV    
Sbjct: 495 ERVLDNLLDNALRHTPPKGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGR 554

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + G GLGL++ +  + LHGG + + S     T     +P
Sbjct: 555 K--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|261251802|ref|ZP_05944376.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           orientalis CIP 102891]
 gi|260938675|gb|EEX94663.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           orientalis CIP 102891]
          Length = 776

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 139/269 (51%), Gaps = 20/269 (7%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           +P++Q MLT V+   S   +R   EK  +L  +A + +  F+  +S+ELR+P+ ++IG  
Sbjct: 176 IPDSQKMLTVVDDVTSEYQQRTALEKAHSLAEQAVQSRERFLATMSHELRTPIASMIGLL 235

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL      + N      ++ + +S+  L  LVNDILD + +D+  + L    +   DLL
Sbjct: 236 ELL---SFENGNIADDYKLKSLMSSARNLQLLVNDILDYSKLDSQGISLVEELVSYTDLL 292

Query: 652 NEVKQSIATKMHENNIRIKVI------SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            ++      ++HE + R + +       +  +   + D  RL QI + +LSNA+ F+ +G
Sbjct: 293 GDL-----VRLHEASARERGLVFETQWDNSDVEYILTDALRLSQIVNNVLSNAVKFTEQG 347

Query: 706 S-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
              V ++ A  +   I  V + G  I  D  +S+F+ F       +R+  G GLGL+I++
Sbjct: 348 KIKVTVRVATQSIQII--VDDTGIGICPDKLESIFDPFRQADDSIERKYGGTGLGLAIIK 405

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
               L  G++SI+S++   T++   +P K
Sbjct: 406 KLTTLMSGYISINSAEGKGTSVMISLPLK 434


>gi|238760599|ref|ZP_04621729.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
 gi|238701186|gb|EEP93773.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
          Length = 1193

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 14/244 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L+   E   +A+  K++F+  +S+E+R+PL+ IIG  +L  T+K G   +++S  V Y
Sbjct: 685 KELSAARENAEQANRTKSTFLATMSHEIRTPLSAIIGLLELAVTNK-GHPGTEESIQVAY 743

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMH-ENNIR 668
            SA +  L+ LV DILD+A +++G ++L    +  N+L + V      +A + H E    
Sbjct: 744 ESAHT--LMGLVGDILDIAKIESGKLELTLEWMKFNELFSPVIPVFMGLARQKHLELTCD 801

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVK 724
           I V+   ++     D  RL QI   ++SNA+ F+ +GS  I        D        V 
Sbjct: 802 IDVLHPEEI---YVDPIRLHQIMFNLVSNAIKFTEQGSVDIQVKCLSGSDQQVMLELVVN 858

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP+D    +F+ +  +    ++ G GLGLSI    +++ GG + + S     T I
Sbjct: 859 DTGVGIPQDDQPQIFSPYKQSDAGKKQVGTGLGLSICAQLVSMMGGTIELFSQPGRGTRI 918

Query: 785 NCRI 788
              I
Sbjct: 919 TVEI 922


>gi|225378733|ref|ZP_03755954.1| hypothetical protein ROSEINA2194_04403 [Roseburia inulinivorans DSM
           16841]
 gi|225209570|gb|EEG91924.1| hypothetical protein ROSEINA2194_04403 [Roseburia inulinivorans DSM
           16841]
          Length = 439

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K  +++  F  +VS+EL++PLT I G+ +L+ +      ++    +   I  S+  L  L
Sbjct: 215 KHSQMRQEFTANVSHELKTPLTAISGYAELIASGMTSGEDT--IHFATEIHKSAERLQYL 272

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDI+ L+ +D+   K+ + T+ L+++    +  +     +N + ++V  D        +
Sbjct: 273 INDIIKLSELDSDDTKIEFETLDLHEMALNCQAMMEIPAEKNEVTVEVQGDS--AEIRGN 330

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           R  + ++   + SNA+ ++ KG  V +    +NG    +VK+ G  IP++  K VF RF 
Sbjct: 331 RNLIDELIYNLCSNAVRYNKKGGKVTIMTGTENGHPTLTVKDTGIGIPKEAQKRVFERFY 390

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            V  +      G GLGL+IV+  +  H   +S+  S+EG  T
Sbjct: 391 RVDKSRSKSTGGTGLGLAIVKHIVAQHEAQISL-ESEEGAGT 431


>gi|229815014|ref|ZP_04445352.1| hypothetical protein COLINT_02057 [Collinsella intestinalis DSM
           13280]
 gi|229809501|gb|EEP45265.1| hypothetical protein COLINT_02057 [Collinsella intestinalis DSM
           13280]
          Length = 911

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 132/250 (52%), Gaps = 7/250 (2%)

Query: 548 SVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           ++ +++A  E+ EA  L K ++++ + ++ + ++LR+PLT I G   +L+       ++K
Sbjct: 659 ALESDKAAREREEAAVLAKNEQLRANLLRSIGHDLRTPLTAISGSAAVLRDGGEKLEDAK 718

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +  + I   S  L++ V ++L +  ++ G M+LN ++ ++++++      +A + H +
Sbjct: 719 RLELADAIYNDSLWLIDTVENLLAITRIEDGDMQLNLTSELMDEVIAAALSHVARESHGH 778

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
             R+ +    ++     D   ++Q+ + +++NA  ++ KGSTV + A R+    +  V +
Sbjct: 779 --RVTITHTDEILLVKIDVHLIMQVLTNLITNAFKYTPKGSTVTIGARREGSSVVVEVAD 836

Query: 726 NGSSIPEDMCKSVFNR-FVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +G  + +     VF+R F++   R     R  GLGLS+  S I  HGG + ++ +     
Sbjct: 837 DGPGVSDRDKPRVFDRFFIAEGPRPVDSHRSFGLGLSLCRSIIEAHGGIIEVADNKPHGA 896

Query: 783 TINCRIPSKE 792
                +P++E
Sbjct: 897 VFRFTLPAEE 906


>gi|167766708|ref|ZP_02438761.1| hypothetical protein CLOSS21_01214 [Clostridium sp. SS2/1]
 gi|167711462|gb|EDS22041.1| hypothetical protein CLOSS21_01214 [Clostridium sp. SS2/1]
          Length = 697

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 7/237 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+AL    E   K + +K   + +VS++L++PLT+IIG+ DLL  S+  +L+++   YV 
Sbjct: 460 EKAL----ETQMKGERMKIDLITNVSHDLKTPLTSIIGYVDLL--SRDQTLSAESRDYVT 513

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +   +  L ++++D+ +LA   +G  K++   + +  L+ +    +A ++ E+   I+ 
Sbjct: 514 ILINKTERLKSIISDLFELAKATSGDAKVDLEEMDMKRLVEQTLGDMADQIEESGFAIRY 573

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +     F+ D  R+ ++   ++ NA+ +S KG+ + L+    + +    V N  S   
Sbjct: 574 QCEATHTRFIGDSSRMYRVVQNVIENALKYSLKGTRIFLRITEADQNIKLEVINTASYEM 633

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS-SSDEGVTTINCR 787
               + +  RF          G GLGLSI +SF    GG  SI    D+ + TI  +
Sbjct: 634 NFTEEEIMERFARAEKSRTSEGNGLGLSIADSFTKNCGGEFSIRIDGDQFLVTIQFK 690


>gi|166711950|ref|ZP_02243157.1| RpfC [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 725

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+ +Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDVEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I AS+  LL+LV ++LD++ ++AG ++++     L DL+  V   +  +     +     
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLRDLIGSVNMILQPQARTRGLDYGTE 289

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
               +   +  D   L Q+   +L NA+ F+  G  V L+ AR +G+        F V++
Sbjct: 290 VATDVPDLLKGDTGHLRQVLLNLLGNAVKFTDHGH-VRLRVARLSGNGADTVRLRFDVED 348

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           +G  +P DM   +F  F   A  G  R   G GLG +I +  I   GG + 
Sbjct: 349 SGIGVPMDMRPRMFEAF-EQADVGLSRRYEGTGLGTTIAKGLIEAMGGAIG 398


>gi|125623280|ref|YP_001031763.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492088|emb|CAL97017.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070031|gb|ADJ59431.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 475

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 127/240 (52%), Gaps = 18/240 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           KA+  +  FV +VS+ELR+PLT++  + + L+    G+++ K+  S ++      +  ++
Sbjct: 223 KAERERRLFVSNVSHELRTPLTSVKAYLEALED---GAIDDKETASSFIGVSLTETNRMI 279

Query: 622 NLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHE----NNIRIKVIS 673
            +++D+L L+ +D   + LN   I     L+  +N + Q + T+ ++    N   ++  S
Sbjct: 280 RMISDLLTLSRMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYS 339

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +   + D  ++ Q+   I+ NA+ +S KG T+ +       D + S+K+ G  IP+ 
Sbjct: 340 DKPIWVEI-DTDKIAQVIDNIIGNAIKYSPKGGTITIYVETRERDVLISIKDEGMGIPKS 398

Query: 734 MCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
               +F+RF  V NA R  +  G GLGLSIV   + +HGG +  SS  EG  TT +  +P
Sbjct: 399 DLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|110677849|ref|YP_680856.1| hypothetical protein RD1_0457 [Roseobacter denitrificans OCh 114]
 gi|109453965|gb|ABG30170.1| conserved domain protein [Roseobacter denitrificans OCh 114]
          Length = 492

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 141/317 (44%), Gaps = 19/317 (5%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           V+ + AF RI  ++      A++ L+ K L + +   +   D+    +W  D  G + W 
Sbjct: 93  VTRAGAFTRINMVENEVQTSAQS-LRFKNLQHELEDLRRASDTTPHAIWQVDSEGSVTWH 151

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N +Y   T     + QK     + +F        ++ S  EK+  + VS     N     
Sbjct: 152 NAAY---TGLYNRLHQKEPDPVKPVFD-------VAPSFHEKSGRQRVSAQLPDNEHVDW 201

Query: 279 IVRVLNSFGEAGI--AIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
               + S G+  I  AIDV+     E    + +    +    L++ +AIFD+N  L   N
Sbjct: 202 YDVTVASVGDIMIFHAIDVNAVVKSEAAQRNFVQTLAKTFAQLSIGLAIFDRNGQLALFN 261

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKD 390
            + ++L E+   FL+  P+     + +R   ++PE  N+ +W++ I  V  ++    +++
Sbjct: 262 PALIDLTELPADFLSGRPTLMSFFDRIRENRRMPEPKNYHSWRQQITDVIAAATDGRYQE 321

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           TW L  GQT  V    +P G   ++ E+++ +V +   +   +++    +D   E + VF
Sbjct: 322 TWTLETGQTYRVSGRPHPDGAIAFLIEDISAEVSVTRNFRAELELGQSLMDTFDEALVVF 381

Query: 451 GPDGRIKLSNPAFRSLW 467
              G +   N A+R LW
Sbjct: 382 SSTGVLTFCNLAYRELW 398


>gi|39725602|dbj|BAD04924.1| ethylene responsive sensor [Chrysanthemum x morifolium]
          Length = 639

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 127/266 (47%), Gaps = 33/266 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  +        
Sbjct: 315 ESMRARDQLMEQNFALNLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALS---SLLLE 371

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L   Q   +E I  SS +L  LVND+LDL+ ++ G ++L      L+ L  EV   I 
Sbjct: 372 TELTPDQRAMIETILKSSNLLAALVNDVLDLSRLEDGSLELESEVFNLHGLFKEVVTLIN 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                 N  + +  D  L +F + D +RL+QI   ++ NA+ F +KG  V ++A+  + +
Sbjct: 432 PIASVKNTSMALNCDLDLPAFGIGDEKRLMQIILNVVGNAVKF-TKGGHVSIQASILSPE 490

Query: 719 F--------------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLG 757
           +                    +  VK++GS I +     +F +F        R  G GLG
Sbjct: 491 YLQEWRTPEFCPTLTEGLFYLLAQVKDSGSGIKQQDIPHIFTKFSEPRSASNRSGGAGLG 550

Query: 758 LSIVESFINLHGGHVSISSSDEGVTT 783
           L+I + F+NL GGH+ I S   G  T
Sbjct: 551 LAICKRFVNLMGGHIWIESGGLGKGT 576


>gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
 gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
          Length = 1692

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 12/239 (5%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            F +VT  ++A   L +  EA  +A   K  F+ ++S+E+R+PL  IIG + LL  +   +
Sbjct: 1073 FEDVTKDIKAAEELRKAKEAAEEAARSKAEFLANMSHEIRTPLNAIIGMSGLLLRT---N 1129

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  +Q  YV  I +S   LL ++ DILDL+ ++ G ++L+ ST  + + +      ++ K
Sbjct: 1130 VTPEQRSYVSAIQSSGNALLEMLADILDLSRIEEGKLELDSSTFSILECVETCIDILSVK 1189

Query: 662  MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RD 715
              E  I +  + D  +   V  D  RL Q+   +L NA+ F+ +G  V L+        D
Sbjct: 1190 ASEKQIELAYLIDEDVPELVLGDATRLRQVLVNLLENAIKFTERGE-VFLRVICQYMDED 1248

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
              +  F V++ G  IP +    +F+ F        RR  G GLGL+I +  + + GG +
Sbjct: 1249 LSELHFFVRDTGIGIPPEKMDRLFHTFSQVDSSITRRYGGTGLGLAISKHLVEMMGGRI 1307


>gi|320101775|ref|YP_004177366.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749057|gb|ADV60817.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1093

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 21/245 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  L E      +A+E K  F+  +S+E+R+PL +++G T LL  +    L ++Q   
Sbjct: 409 RFEAQLVEAKRIADQANEAKTRFLAGMSHEIRTPLNSVLGMTRLLMDTP---LTAEQRDL 465

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +S   LL LVN +LDL+ +++G M+L ++++    ++  V   IA       + +
Sbjct: 466 AAAIQSSGESLLELVNGVLDLSKIESGRMELEHASMSPRGVVESVLDMIAATAERKGLEV 525

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGD- 718
              +++        D  +L Q+   + SNA+ F++ GS  I         L+  RD+   
Sbjct: 526 AARVAEDVPERVRGDAAKLRQVLVNLASNAVKFTASGSVTIDVITLGQCPLRPGRDSVSD 585

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                  F+V++ G  I  D    +F+ +        R   G GLGL+I +  + L GG 
Sbjct: 586 RPGLILSFTVRDTGVGIAPDKVSRLFDAYRQADASITRLYGGTGLGLAISKKLVELMGGE 645

Query: 772 VSISS 776
           + + S
Sbjct: 646 IEVES 650


>gi|126651383|ref|ZP_01723590.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
 gi|126591912|gb|EAZ85995.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
          Length = 510

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 9/227 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L + ++I+  FV +VS+ELR+P+T+I GF++ L     G+   ++    ++E I   S  
Sbjct: 281 LVRLEQIRKDFVANVSHELRTPITSIKGFSETLLD---GAYKDEKMLISFLEIIYKESNR 337

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ D+L+L+ ++     +N   + L D+L    +  A ++ E N+  +V  D  +  
Sbjct: 338 LQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDRDV-Q 396

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R++QI + +++NA+ +S + +TV ++   +    I  +++ G  I +     VF
Sbjct: 397 VMGDANRIIQIVTNLITNAITYSPENTTVSIRLKENETHGIIEIEDQGIGIEKHEIARVF 456

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            RF  V  A      G GLGL+IV+  +  H G + +  S+ GV TI
Sbjct: 457 ERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQV-ESEVGVGTI 502


>gi|56475945|ref|YP_157534.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56311988|emb|CAI06633.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
          Length = 509

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 134/320 (41%), Gaps = 32/320 (10%)

Query: 482 NIAATCSRYYNESDG------WDLFAAIITSFD----------DERKSLQGTLELLSDSV 525
            + A   R  +E DG      W L  A+  +F                ++G +E L +S 
Sbjct: 192 QLEAESKRLLDELDGNREQLAWHLLVAVTAAFLLAALTGWWVLRPLTRVEGAIEALGESR 251

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +  +I +     +       D +R   A  E N         +   ++HVS+EL++PL 
Sbjct: 252 FDEPVI-IGGPADLRRVGRRLDWLRVRLADLEAN---------RTRVLRHVSHELKTPLA 301

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL--DLATVDAGIMKLNYS 643
           ++     LLK   +G L + Q + V  +  ++  L   +  +L  + A  DA    L   
Sbjct: 302 SLREGIALLKDGVVGELTAGQHEVVGILEHNTRALQLRIEGLLGYNAAVFDA--RSLKRR 359

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + L  L+  V      ++   N+ + +  +G +    AD  +L    + +++NA+ FS 
Sbjct: 360 KVALRPLVEAVVAEQQLQIQSRNLHVDIDVNGNIPPLSADPDKLRIALANLVANAISFSP 419

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
            G  V LK AR   D      + G  +PE+  + +F  F   + +    R G GLGLSIV
Sbjct: 420 HGGKVRLKIARQLRDVTIDCIDEGPGVPENESERIFEPFYQGSRQPAAPRHGSGLGLSIV 479

Query: 762 ESFINLHGGHVSISSSDEGV 781
             FI+ HGG + +  +  G 
Sbjct: 480 REFIDAHGGKIELLPTSTGA 499


>gi|54301706|ref|YP_131699.1| sensor protein TorS [Photobacterium profundum SS9]
 gi|46915126|emb|CAG21899.1| hypothetical sensor protein TorS [Photobacterium profundum SS9]
          Length = 1035

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 11/223 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +A++ K+SF+ H+S+E+R+P+  I+G   LL  +   +L++ Q  Y + I +S  I
Sbjct: 535 EQAEQANKAKSSFLAHMSHEIRTPMNGIMGTLHLLDDT---TLDNAQKHYTKTIISSGEI 591

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ ++N++LD + ++AG   +N +    + ++  V   +  +  E NI++       +  
Sbjct: 592 LMGVLNNVLDYSKIEAGCFDINETNFRTDLIVGNVVNMLKARAKEKNIKLTYAVASDVPD 651

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI--FSVKNNGSSIPED 733
           ++  D  +++QI + ++ NA+ F++ GS  I   LK       F+  F V + G  IPE 
Sbjct: 652 YLHGDANKIIQILTNLVGNAIKFTNLGSVTIRVQLKEQLPEDRFLLKFEVLDTGKGIPER 711

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F  F          G GLGL I + F  + GG + + S
Sbjct: 712 KQAVIFEPFEQVTQ--SEGGTGLGLPISKRFAEMLGGELMVYS 752


>gi|329901629|ref|ZP_08272868.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549058|gb|EGF33662.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 762

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 6/229 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K+ F+  +S+E+R+P+  IIG T LL  + L   N++Q ++   I  S+  LL +
Sbjct: 382 QANAAKSVFLSTMSHEIRTPMNGIIGMTGLLLETPL---NTEQREFARIIETSADALLTV 438

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +NDILD + ++AG + +      L   +      IA K  +  + +    D  L  FV  
Sbjct: 439 INDILDFSRIEAGKLMVESVAFALPATVAGCIDVIAGKACDKGLALNCTIDPALPVFVMG 498

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI   +L NA+ F++ G   +       G   F V ++G  I +     +F  F
Sbjct: 499 DAGRLRQILLNLLGNAIKFTATGKVALHVTPVLAGAVRFVVADSGIGIDQKNAAELFIPF 558

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +  +   +  G GLGLSI +  + L GG +   S      T    +P
Sbjct: 559 HQIDGSITRKYGGTGLGLSITKRLVELMGGTIGFESVPGQGATFWVELP 607


>gi|289663864|ref|ZP_06485445.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 769

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 94  EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 151 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLRLSL 210

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 211 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 270

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 271 GIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 330

Query: 785 NCRIP 789
              IP
Sbjct: 331 WFEIP 335


>gi|251778968|ref|ZP_04821888.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083283|gb|EES49173.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 515

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 111/219 (50%), Gaps = 8/219 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILL 621
           + +K  F   VS+E ++PL  I+    LL    K   L        +Y+  I  +S  LL
Sbjct: 252 ESLKTEFFATVSHEFKTPLNIILTTVQLLADKFKNDVLTEEVKINLKYINGIKQNSYRLL 311

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVN+++D+  +D GI KL+     +  ++  +  S++  ++E N  I   +  +     
Sbjct: 312 KLVNNLIDITQIDGGIYKLSLENCNIVSVIENIVISVSKYINEKNRNIIFDTTKEEIILA 371

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVF 739
            D  ++ +I   +LSNA+ ++++G  + +  + D  N   I  +K++G  IPE    S+F
Sbjct: 372 IDCDKIERIILNLLSNAVKYTNRGGNIYVNLSTDINNNRVIVKIKDDGIGIPEKDIDSIF 431

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            RF  +     RR  G G+GLSIV S I +HGG + +++
Sbjct: 432 RRFKQSGDVFTRRCEGTGIGLSIVRSLIEMHGGKIKVNN 470


>gi|221210649|ref|ZP_03583629.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221169605|gb|EEE02072.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 1001

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 133/265 (50%), Gaps = 18/265 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T   + E+ L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+  + 
Sbjct: 490 LCTLTDITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAP 549

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---- 654
           L     ++   ++ I++SS  LL +++D+LDL+  ++  M +      + D+L+++    
Sbjct: 550 LAPTERRR---LDTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFY 606

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LK 711
           +   + K  E   R+   ++DG    +V D  RL QI S ++ NA+ F+ +GS  I   +
Sbjct: 607 RPLASAKGLELRCRVAPELADG----YVGDPVRLRQIMSNLVDNAIKFTERGSVSIDAQR 662

Query: 712 AARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
             R  G     ++  + G  IP D   ++F+ ++       RR  G GLGL +      L
Sbjct: 663 VVRSAGGARVEIRIADTGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAML 722

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
             G +++ S +   TT+   +P  E
Sbjct: 723 MHGDLTVDSREGEGTTMCVTLPLPE 747


>gi|254255329|ref|ZP_04948645.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124901066|gb|EAY71816.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 1020

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 22/268 (8%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T V++T     E++L     A  +A+  K+ F+  +S+E+R+PL  +IG  +L+K   
Sbjct: 503 LCTVVDITARKLTEQSLDAARRAADQANRAKSVFLATMSHEIRTPLNAVIGNLELMKR-- 560

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L   Q + +     SST LL+++ND+LDL+ V+AG ++++        LL++V +S 
Sbjct: 561 -GPLADAQRRRLHAADTSSTALLHILNDVLDLSKVEAGQLRIDAVPFDCAALLDDVTESF 619

Query: 659 ATKMHENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712
                     + VI D  L      + D  R+ QI S +LSNA+ F+  G   +      
Sbjct: 620 RPLAERKG--LSVICDVALEPSPYRIGDPIRIRQIVSNLLSNAIKFTDAGHVRVAAHAAS 677

Query: 713 ------ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
                  R  G        V + G  IPE    ++F  +        RR  G GLGL++ 
Sbjct: 678 DAAHGTGRTAGGAPVVEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLGLALC 737

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++   G +++SS+    +T   RIP
Sbjct: 738 RRLLDAMSGDIAVSSAPGAGSTFRVRIP 765


>gi|170726314|ref|YP_001760340.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811661|gb|ACA86245.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1713

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A+  LT K E L  A + K+ F+ ++S+ELR+PL +++     L  +K   L+  + +  
Sbjct: 1003 AKTDLTIKAEELALASKYKSEFLANMSHELRTPLNSLLLLAKGLADNKSQHLDETEVEDA 1062

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I      LL L+NDI+DL+ V+AG + ++   + +  L   ++Q       +  + + 
Sbjct: 1063 KIIFDGGNNLLCLINDIMDLSKVEAGKLSIHIEEVSIAVLCRNLRQVFDPIAKDRELVLN 1122

Query: 671  VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF--------- 719
            +  D KL S V +D  R+ QI   +LSNA+ F+  GS T+ +     N  F         
Sbjct: 1123 IEVDDKLPSTVRSDGHRVEQILRNLLSNALKFTETGSVTLKIGYVAPNTLFSHSSLDAET 1182

Query: 720  --IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               FSV + G  IPE+  +++F  F        R+  G GLGL+I      L GG + + 
Sbjct: 1183 ALSFSVVDTGIGIPENKIQAIFEAFQQQDGSTSRKYGGTGLGLTIARELTRLLGGEIQLQ 1242

Query: 776  SS-DEGVT 782
            S  DEG T
Sbjct: 1243 SVLDEGST 1250


>gi|16801788|ref|NP_472056.1| hypothetical protein lin2727 [Listeria innocua Clip11262]
 gi|16415263|emb|CAC97953.1| lin2727 [Listeria innocua Clip11262]
          Length = 459

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 12/233 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620
           L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q +Y+  +S  +T L
Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQKEYLTVLSEETTRL 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679
            +L   +L LA++D          + L +   ++ Q       E  + I + ++D    +
Sbjct: 289 SSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSWREKELTINLELADI---N 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738
           +  D + L Q++S +L+NA+ ++  G  + ++   +  +    V N+G+ I  EDM K +
Sbjct: 346 YSGDAELLYQVWSNLLNNAIKYTPLGGNIQVRLYEETTNVFVEVWNSGAGISKEDMAK-I 404

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF   S +   +    GLGLSI +  I LH G +++ S+ +  TT   ++P
Sbjct: 405 FDRFYKASQSRTREEGSSGLGLSICKKIITLHHGEITVESNTDKGTTFKVKLP 457


>gi|311280421|ref|YP_003942652.1| osmosensitive K channel signal transduction histidine kinase
           [Enterobacter cloacae SCF1]
 gi|308749616|gb|ADO49368.1| osmosensitive K channel signal transduction histidine kinase
           [Enterobacter cloacae SCF1]
          Length = 894

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 122/261 (46%), Gaps = 7/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L    +  +   +R ALT   E  R A E   I+NS +  +S++LR+PLT + 
Sbjct: 623 IPEQQRLLETCTLLVASALDRLALTTSEEQARLASERESIRNSLLAALSHDLRTPLTVLF 682

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L T  L S  SK +     I         LVN++LD+A + +G   L    + L 
Sbjct: 683 GQAEIL-TLDLASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSGGFNLRKEWLTLE 741

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    +++   +   +I + +     L     D     ++   +L NA+ ++   + +
Sbjct: 742 EVVGSAIRTLEPGLGGRHIELHL--GDPLALIHVDGPLFERVLINLLENAVKYAGTKAQI 799

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            + A   +      V +NG  IP    +S+F++F          GVGLGL+I ++ +++H
Sbjct: 800 GITATHQDEQLQLDVWDNGPGIPAGKEQSIFDKFARGHKESAIPGVGLGLAICQAIVDVH 859

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +S  +  EG  +    +P
Sbjct: 860 GGTLSAHNRPEGGASFTVTLP 880


>gi|293397257|ref|ZP_06641529.1| sensor histidine kinase KdpD [Serratia odorifera DSM 4582]
 gi|291420175|gb|EFE93432.1| sensor histidine kinase KdpD [Serratia odorifera DSM 4582]
          Length = 387

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 128/262 (48%), Gaps = 9/262 (3%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD----EIKNSFVQHVSYELRSPLTNII 588
           +P  Q +L    V  +   ER    ++ A  K D    +++NS +  +S++LR+PLT + 
Sbjct: 112 VPEQQRLLQTFTVLIASALERLQLARSAAEAKLDAEREQLRNSLLAALSHDLRTPLTVLF 171

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L T  L S  S+ +Q    I         LVN++LD+A + +G   L      L 
Sbjct: 172 GQAEIL-TLDLASEGSQHAQQASQIRQQVLSTTRLVNNLLDMARIQSGGFSLRKEWQSLE 230

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++      +   + +++IR+++  D  L     D   L ++F+ +L NA  ++   + +
Sbjct: 231 EIVGASLHMLEPILSQHDIRVELPDDMVL--INCDGSLLERVFTNLLENANKYAGHDAII 288

Query: 709 ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            ++A R   D++   V +NG  IP++  + +F++F          GVGLGL+I  + I +
Sbjct: 289 GIRA-RTLPDWLEVEVWDNGPGIPQEQKQRIFDKFARGNKESPIPGVGLGLAICRAIIEV 347

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +    + +G  +    +P
Sbjct: 348 HGGRIWSDDASQGGASFKFLLP 369


>gi|302382543|ref|YP_003818366.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302193171|gb|ADL00743.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 561

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 555 LTEKNEA--LR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           L+E+ +A  LR  +A   K+  + +V++E++SP+  +IG  DL  + +LG +   Q++  
Sbjct: 320 LSERAKAGQLRAERASAAKSRLLANVAHEIKSPIGGVIGIGDLWSSGQLGPVTPTQAEMA 379

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  ++  +  L +D+LD+A  ++G +K+      +  +L +++ +   +     + + 
Sbjct: 380 VMLVKTARQVEALSHDLLDVARAESGAVKVELRPTDVPGILEDIRAATVLRPEARALSVS 439

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V+ +G     +AD QRL Q+   + +NA+ ++  G +++L+A R        V + G  +
Sbjct: 440 VVCEGDGLIAIADSQRLAQVIDNLATNAVKYAGAGGSLVLRARRIYDGVRIEVVDRGPGL 499

Query: 731 -PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
            PE   +    FNR      R    G G+GL++ +  + L GG + + S+  EG T
Sbjct: 500 TPEKQAQLFEPFNRL--GLERSSVEGHGIGLALAKRLVELQGGSIGVVSNLGEGST 553


>gi|229029240|ref|ZP_04185331.1| hypothetical protein bcere0028_13370 [Bacillus cereus AH1271]
 gi|228732053|gb|EEL82944.1| hypothetical protein bcere0028_13370 [Bacillus cereus AH1271]
          Length = 603

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 143/292 (48%), Gaps = 33/292 (11%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 325 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 364

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   + Y + 
Sbjct: 365 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTTYYTDV 420

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L+ +V   +   M E ++++ + 
Sbjct: 421 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELIQQVYTKLLFSMEEKHLQVNID 480

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D  +  FV A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IP
Sbjct: 481 VDSSI--FVKANRSRIEQVVVNLLSNAIRYTPDGEKIQVSVIEMEDTVKVEIENTGNPIP 538

Query: 732 EDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ED  + +++RF   +A R +   G GLGLSIV++ ++LH     + +++  V
Sbjct: 539 EDSLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTNNSV 590


>gi|226944603|ref|YP_002799676.1| hybrid histidine kinase [Azotobacter vinelandii DJ]
 gi|226719530|gb|ACO78701.1| hybrid histidine kinase [Azotobacter vinelandii DJ]
          Length = 642

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 8/250 (3%)

Query: 531 IPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + LP+    + FV ++TD    E +L E  E   +A   K++F+ ++S+E+R+P+ +IIG
Sbjct: 17  VDLPDEVLFVGFVTDITDRYTLEASLRETAERAEQAAAAKSTFLANMSHEIRTPMNSIIG 76

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           FT+LL  S L  +   Q  ++  I  SS  LL L+NDILD   ++ G ++L  +   L  
Sbjct: 77  FTELLLQSNLSPV---QRNHLNTIRQSSRSLLGLLNDILDTTKMEKGGLELERTDFSLKG 133

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           L  +++ S+        + +       +   F  D  RLLQ+ + ++ NA+ F+ +G   
Sbjct: 134 LAMQIESSLYLGAQSKRLTLATHYPRDMPEHFQGDPLRLLQVLTNLVGNAIKFTERGRVD 193

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           ++ +  ++   +  V++ G  +      S+F  F        RR  G GLG +I    + 
Sbjct: 194 VVFSHEEDMVHV-QVRDTGIGMTPQQAASIFAPFTQADASISRRFGGTGLGTTIAHQLVE 252

Query: 767 LHGGHVSISS 776
           L GG + + S
Sbjct: 253 LMGGRIGVES 262


>gi|318056508|ref|ZP_07975231.1| two-component system sensor kinase [Streptomyces sp. SA3_actG]
          Length = 585

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  AL  +   +   +E    FV  +S+ELR+PLT I   T++L+  ++ +L+      V
Sbjct: 287 AAAALERRVADMSAREEASRRFVADMSHELRTPLTAITAVTEVLE-EEIDTLDPMIEPAV 345

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             + + +  L  LV +++++   DAG  +L    +   D+ +++   I  +   + + + 
Sbjct: 346 RLVVSETRRLNTLVENLMEVTRFDAGTARLVCDDV---DIADQITACIDARAWLDAVEL- 401

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              D + G     D +RL  I + ++ NA+     GS V +    +    +  V+++G  
Sbjct: 402 ---DAERGIMARVDPRRLDVILANLIGNALKHG--GSPVRVSVRVEGPSLVIRVRDHGPG 456

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           IPED+   VF+RF  ++A R +  G GLGLSI ++  ++HGG ++ ++S EG      R+
Sbjct: 457 IPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAQANAHIHGGGITAANSPEGGAVFTLRL 516

Query: 789 P 789
           P
Sbjct: 517 P 517


>gi|313107599|ref|ZP_07793784.1| hypothetical protein PA39016_001030048 [Pseudomonas aeruginosa
           39016]
 gi|310880286|gb|EFQ38880.1| hypothetical protein PA39016_001030048 [Pseudomonas aeruginosa
           39016]
          Length = 384

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 13/223 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS---STILLNLVNDIL 628
           F   +++ELR+P TN++  T +     LG   S + +Y E + ++      +  ++ D+L
Sbjct: 166 FSADIAHELRTPATNLVTQTHV----ALGQPRSNE-EYREILYSNLEEFDRMGRMIGDML 220

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA  +     L  STI L++L+  +         ++ I + V   G +GS  ADR+ L 
Sbjct: 221 FLAQTENDPRNLRLSTIDLSELVRSLFDYFEALAEDSGITLGV--KGAIGSIAADREMLT 278

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           +  + +LSNA+  + +G ++ +  ++D      SV N G  IPE     +FNRF  V  A
Sbjct: 279 RALNNLLSNAIRHTPRGKSITVLLSQDEQWTTISVVNPGERIPERDLPKLFNRFYRVDPA 338

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            R    G GLGL+IV+S    HGG V+++SS E VT  +  +P
Sbjct: 339 RRRNTAGAGLGLAIVKSIAEAHGGSVAVTSS-ELVTRFDLVLP 380


>gi|309789502|ref|ZP_07684085.1| sensory transduction histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308228468|gb|EFO82113.1| sensory transduction histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 528

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 18/268 (6%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PL +   ++ + +++  + AE+AL +  + L +++     F    S++L+ PL  +IG 
Sbjct: 271 LPLEDYGVVIAYNDISSRMAAEQALHQTMKELTRSNADLEQFAYVASHDLQEPLRGVIGM 330

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL     G L+S+  QY+     S+  +  L+ND+L  + V+             N +
Sbjct: 331 LQLLHERYQGRLDSRADQYIALAIDSANRMQALINDLLLFSRVERR-----------NQI 379

Query: 651 LNEVKQSIATKMHENNIRIKVISDG------KLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             ++  + A +    N+++ +   G       L    AD  ++ Q+F  +LSNA+ F  +
Sbjct: 380 FTQMDAAAALEHAMANLQVVIQESGAEITYDPLPQIYADSTQITQLFQNLLSNAIKFRDE 439

Query: 705 GSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               I + A R +  ++F+V++NG  I  D  + +F  F     R    G G+GL+I + 
Sbjct: 440 APPRIHISAQRRSNAWVFAVRDNGIGIAPDHVERIFIIFQRLHPRQAYPGTGIGLAICKK 499

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  HGG + ++S      T    IP +
Sbjct: 500 IVERHGGQIWVNSHLGHGATFFFTIPDQ 527


>gi|256829655|ref|YP_003158383.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578831|gb|ACU89967.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 979

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 23/244 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L  + EA   A   KN F+  +S+E+R+P+  I+GFTD+    +      +  QY+  
Sbjct: 431 RQLKLEREASAMAARAKNLFLARMSHEIRTPMAAILGFTDIALRMQC---CDQVRQYLLK 487

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+  LL L+N+ILDLA ++AG + + + +  L  L  EV + +A    +N   + + 
Sbjct: 488 VKVSAGHLLGLINEILDLAKIEAGKLDVEHKSFDLLCLAREVCEIVAPMAEKNGNELLLE 547

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------------ARDN 716
           +D  L   V  D  RL Q+   +  NA+ F+  G   I                  A  +
Sbjct: 548 ADPDLPVHVFGDPMRLRQVLVNLAGNAVKFTKNGEVRIAMGFAKAVPGAAYAVDAHAFSS 607

Query: 717 G--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           G   F F + + G  IP ++   +F  F         R  G GLGL+I    + L GG +
Sbjct: 608 GRQRFRFEISDTGPGIPAELIPRLFQAFEQGGGDTASRYGGAGLGLNISSRLVELMGGVI 667

Query: 773 SISS 776
            +SS
Sbjct: 668 GLSS 671


>gi|146342170|ref|YP_001207218.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194976|emb|CAL79001.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain (modular protein)
           [Bradyrhizobium sp. ORS278]
          Length = 1319

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 117/236 (49%), Gaps = 5/236 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EAL + D  K +F  ++S+E R+PLT ++   + L     G++ ++    +  I  +S
Sbjct: 368 RAEALAEVDRAKTTFFSNISHEFRTPLTLMLSPLEDLLARDEGTIAAEDRSVLTLIHRNS 427

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ LVN +LD + ++AG M   +  + L  L +E+  +  +      +++ + ++   
Sbjct: 428 LRLMKLVNTLLDFSRIEAGRMTARFEPVDLGGLTSELVSNFRSATDRAGLQLVIETEALP 487

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCK 736
                DR    +I   ++SNA  F+ +G   + +  + D       V++ G+ IP     
Sbjct: 488 EPVHVDRDMWEKIVLNLVSNAFKFTFEGEIAVSIGLSSDRRQAELRVRDTGTGIPPGELP 547

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC-RIP 789
            +F RF  +  A      G G+GL++V+  + LHGG +++  S+ G  ++ C RIP
Sbjct: 548 HLFERFRRIEGARGRSFEGSGIGLALVQELVKLHGGEITV-ESELGRGSVFCVRIP 602



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 25/226 (11%)

Query: 560  EALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            EA R+A +++        V+++  + LT I    DLL+  +L     +  +YV+ IS ++
Sbjct: 939  EAFRQAQKMEAIGQLTGGVAHDFNNLLTVIRSSADLLRRRQLSP--ERMRRYVDAISDTA 996

Query: 618  TILLNLVNDILDLA---TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                 L   +L  A    ++  +  +      + D+L  V  + A  + E ++R + +  
Sbjct: 997  DRAAKLTGQLLAFARRTPMERSVFDVAGHIEQIEDMLQTVLGAPA--VIELDLRSRPLP- 1053

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMD-------FSSKGSTVILKAARDNGDFI-FSVKNN 726
                    D  +L      +++NA D        + +G  V  + A     F+  +V + 
Sbjct: 1054 -----VDVDVNQLETALVNLVANARDAMNGRGVLTIRGDRVQQQTAGGAQPFVSIAVSDT 1108

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G  I  D    +F  F +   +G  RG GLGLS V  F++  GG V
Sbjct: 1109 GCGIAADQIDRIFEPFFTT--KGVGRGTGLGLSQVYGFVHQSGGRV 1152


>gi|146309133|ref|YP_001189598.1| sensory histidine kinase CreC [Pseudomonas mendocina ymp]
 gi|145577334|gb|ABP86866.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina ymp]
          Length = 473

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 7/212 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDL 630
           +V  +++EL+SPL  I G  +LL     G + ++Q Q +V  I   S  L NL+  +L L
Sbjct: 259 YVHTLTHELKSPLAAIRGAAELLD----GDMPAEQRQRFVANIQQESARLQNLIERLLHL 314

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A V+          + L  L+ E+ Q+   ++    +RI+      L S   +R  L Q 
Sbjct: 315 AQVEQRQGLEERVAVPLAALVEELLQAQQARIVAAGLRIEPAVPANL-SLRGERFLLRQA 373

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RG 749
            + +L NA+DF+  G  + + A R     +  + N G +IPE     +  RF S     G
Sbjct: 374 LANLLDNALDFTPPGGCIRIAAERQGERIVLRLFNQGEAIPEYALARLTERFYSLPRPNG 433

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            R+  GLGL+ V+    LHGG + I + + GV
Sbjct: 434 GRKSTGLGLNFVQEVAELHGGELQIGNVEGGV 465


>gi|146279078|ref|YP_001169237.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557319|gb|ABP71932.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 850

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 128/253 (50%), Gaps = 15/253 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++   RAER LTE  +     ++ +  F+  +S+E+R+PL  + G  +LL  +    L+
Sbjct: 341 DISARRRAERELTEARDQALAGEQARADFLAVMSHEMRTPLNGLAGSVELLDQTP---LD 397

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-- 661
            +Q + V  + AS+ ILL+ VN +LD+A  +A   + + + +V  DL   V + IA +  
Sbjct: 398 MRQRELVSVLRASAQILLDHVNSVLDIARSEA---RPSEAEMVDYDLDRLVAECIANQSG 454

Query: 662 ---MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +  N I ++ I+ G +G    +  RL Q+   +L+NA+ F+  G  +I++     G 
Sbjct: 455 FAAVVGNRIDLRAIT-GPVGLLNGEPARLRQVILNLLNNAVKFTRNGR-IIVETEVMGGT 512

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V + G  I  +  + +F+ FV+     +RR  G GLGL I      + GG +++ S
Sbjct: 513 LEIRVLDTGIGIAPENQEKIFDDFVTLDASYERRSGGTGLGLGIARRLARIMGGDLTVES 572

Query: 777 SDEGVTTINCRIP 789
           +    +    R+P
Sbjct: 573 APGNGSRFTLRLP 585


>gi|330874568|gb|EGH08717.1| sensory box histidine kinase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 595

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 157/353 (44%), Gaps = 23/353 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +D + +G+ +    G ++  NP  +     +E+RL      +++    SR   E D  +
Sbjct: 263 VLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLG-----QSLGEALSR--PELD--E 313

Query: 499 LFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556
               ++     ER      +E+  +S +L YS+ P+ + +  +L  V V   V  +RA  
Sbjct: 314 QLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF- 372

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                    + +++ FV   S+ELR+P+T +     LL+     +  S+++  +  ++  
Sbjct: 373 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTEE 423

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +     
Sbjct: 424 MQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEAKARYEGQAQEQDIVLMLDIQEP 483

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I      
Sbjct: 484 MPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIAYGQQG 543

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  FV    +  + G GLGL++ +  + LHGG + + S     T     +P
Sbjct: 544 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|312796927|ref|YP_004029849.1| sensor protein kdpD [Burkholderia rhizoxinica HKI 454]
 gi|312168702|emb|CBW75705.1| Sensor protein kdpD (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454]
          Length = 938

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 112/216 (51%), Gaps = 9/216 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK---QSQYVEYISASSTIL 620
           +++ ++NS +  +S++LR+PLT I+GF  +L   + G    +   +   +E I   +  +
Sbjct: 667 ESERLRNSLLSAISHDLRTPLTAIVGFASMLAEQQSGGAPPRPQAERDLIEAIHEEALRM 726

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV ++LD+A + AG ++LN   ++L +++     +    +  + +  +V ++  L   
Sbjct: 727 TRLVTNLLDMARLQAGAVRLNRQWLMLEEMVGAALAACRRSLAAHPVHTRVPAELPLLRL 786

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF---SVKNNGSSIPEDMCK 736
             D   +  +F+ +  NA  ++  G+ + + A   ++G   +   +++++G  +P  M  
Sbjct: 787 --DPVLMEHLFANLFENAAKYTPTGAPLSIDAGVVEDGARRYVKVAIEDSGPGLPPGMQA 844

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            VF++F        + G+GLGL+I  + ++ HGG +
Sbjct: 845 RVFDKFTRGEKESAKPGIGLGLAICRAIVDAHGGRI 880


>gi|312872733|ref|ZP_07732798.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325912287|ref|ZP_08174684.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
 gi|311091775|gb|EFQ50154.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325475946|gb|EGC79115.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
          Length = 612

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++ 
Sbjct: 368 QKNENEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIA-PQFLGVIQNETERMIR 426

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---IKVISDGKLGS 679
           ++ND+L+L+ +D G++K++   + LND L+ +       +  + ++   I+ I   +   
Sbjct: 427 MINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALW 486

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  +++Q+   I++NA+ +S  G  + ++  + +   I SV + G  IP      +F
Sbjct: 487 VEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRKDLSRIF 546

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A   ++ G GLGL+I +  +  H G +   SS+   +T    IP
Sbjct: 547 DRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|298490277|ref|YP_003720454.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298232195|gb|ADI63331.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 446

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 2/229 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    +  +N  L +A  +K  F+  +S+E R+P+  IIGF+ +L   K G LNS+Q   
Sbjct: 155 RQREQIQLQNLRLLEASRLKTKFLATISHEFRTPMNAIIGFSQILLRPKFGQLNSQQVDM 214

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  +   LL L+N++LD + +++G ++L    + L  ++N     I +      + +
Sbjct: 215 VERILNNGKHLLMLLNEVLDFSKLESGRLELKPEILDLEKIVNNSVSEIMSLAEAKKLSL 274

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V +D +      D  R+ QI   +L+NA+ F+  G   +            ++++ G  
Sbjct: 275 VVETDLQNTLIFNDSVRVRQILINLLANAVKFTESGGIWVEVKEITQNRLTITIRDTGIG 334

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I     K +F  F  V      +  G GLGL+I +S + + GG + + S
Sbjct: 335 ISSKDFKHIFEAFRQVDQGISRKYPGTGLGLAITDSLVQMMGGKIFLES 383


>gi|192359662|ref|YP_001981685.1| response regulator receiver domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190685827|gb|ACE83505.1| Response regulator receiver domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 1061

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 11/226 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K EAL  A   K  F+ ++S+E+R+PL  IIG   +    ++   N     Y++ + AS 
Sbjct: 510 KEEAL-AASRAKADFLANMSHEIRTPLNAIIGLAHVALAMEM---NPNLRNYLQKMRASG 565

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL ++NDIL+ + ++AG +KL+     L D++      ++ K     + ++V    ++
Sbjct: 566 EHLLEVINDILNFSRLEAGKLKLDQVEFALVDVIQRAINLVSDKAEAKGLSLQVEIAPEI 625

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNG-DFIFSVKNNGSSIPE 732
             ++  D  RL QI   + +NA+ F+ +G   +L   KA R +  + I  V++ G  I  
Sbjct: 626 SPWLKGDPLRLGQILINLCANAVKFTDQGCIQLLVQQKARRGDAINLIIDVRDTGIGIAP 685

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  S+F  F  V N++  +  G GLGL+I +S  +L   H+S+ S
Sbjct: 686 GLLASLFQPFHQVDNSNTRRFEGTGLGLAICKSLADLMDAHLSVES 731


>gi|206977000|ref|ZP_03237901.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|206744805|gb|EDZ56211.1| sensor histidine kinase [Bacillus cereus H3081.97]
          Length = 368

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 129/245 (52%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 124 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 183

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  + +L++++ ++  ++ G++KL+   I +++LL ++ + +   + ++++  
Sbjct: 184 IAY--TKSQRVESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLEA 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DNG+ +  V N G S
Sbjct: 242 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNGEVVVQVMNYGDS 300

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F + +  R + R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 301 IPEEDLPYLFDMFYTGDKSRSENRGGTGLGLFIAKNIVEQHNGTIS-AESNIVRTMFEVR 359

Query: 788 IPSKE 792
           +P  E
Sbjct: 360 LPKDE 364


>gi|24349687|gb|AAN56450.1|AE015782_2 sensor histidine kinase/response regulator [Shewanella oneidensis
           MR-1]
          Length = 929

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 14/232 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y+  I  S
Sbjct: 285 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYINTIERS 339

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + L E    I+       + + V I+  
Sbjct: 340 ATNLLAIINDILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDIAPN 399

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++   L+A  D    +   V + G  I 
Sbjct: 400 VPDNVNGDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGIGID 459

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780
           E     +F  F        RR  G GLGL I +  +N  GG +  +SS D+G
Sbjct: 460 ESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKG 511


>gi|88797705|ref|ZP_01113293.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Reinekea sp. MED297]
 gi|88779382|gb|EAR10569.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Reinekea sp. MED297]
          Length = 976

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 116/246 (47%), Gaps = 8/246 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ L+++N+ L + D++K+ F+ + S+E R+PLT I G    +    LG  N    Q + 
Sbjct: 445 QQILSDQNDRLLELDQMKSHFLANFSHEFRTPLTLIKGPLKQILNGDLGEQNDATLQAIA 504

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S+  L  L+ ++L L+ ++A  +KL   +  LN     +      +  E  +++  
Sbjct: 505 TSQRSAERLARLMEELLMLSHLEANQLKLQVQSTELNSFCRRIVSLFEYQAQERELKLSC 564

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNGD-----FIFSVKN 725
               +      D ++L  +   ++SNA+ F+ + G+  +  +   + D     + F V +
Sbjct: 565 ECLAEDTVAFCDVRKLETVVYNLISNAIKFTPRQGAITVQLSVEGDADQTERFYRFEVSD 624

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +  + VF RF  +    R    G GLGLS+V     +HGG V ++ S  G + 
Sbjct: 625 TGPGIPVEQREQVFQRFYRLQKDARSGAEGSGLGLSLVRELTEMHGGTVLVTESTMGGSC 684

Query: 784 INCRIP 789
              RIP
Sbjct: 685 FTVRIP 690


>gi|329910714|ref|ZP_08275357.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546114|gb|EGF31175.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1105

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 15/242 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +A   A+  K+ F+  +S+ELR+PL  +IG T LL  +    ++ +Q  + + I 
Sbjct: 449 LEQARDAAESANRAKSDFLATMSHELRTPLHAVIGLTRLLGAAP---ISPRQRDHADNIL 505

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  +++DILD + ++AG ++L +    LN +L      I   + +  +      D
Sbjct: 506 LSAEALQTMIDDILDFSRIEAGKLQLEHLPFSLNAILRTTATVIGIGLVDKPVEACFDID 565

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNG----DFIFSVKNNG 727
             +   V  D  RL Q+   + SNA+ F+  GS ++  L   R  G     FIF  +++G
Sbjct: 566 PDMPDLVLGDSLRLQQVLLNLASNAVKFTDAGSIIVQLLCEPRAGGRIALKFIF--RDSG 623

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVTTI 784
             IP     ++F +F        RR  G GLGL+I     +L  G +S+ S   +G T  
Sbjct: 624 IGIPAAQLDTIFEQFTQADTSTTRRYGGSGLGLAISRRLADLMRGTISVDSQPGQGSTFC 683

Query: 785 NC 786
            C
Sbjct: 684 FC 685


>gi|255523351|ref|ZP_05390321.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255513005|gb|EET89275.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 502

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 120/236 (50%), Gaps = 10/236 (4%)

Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L EKN+ L       RK DE++  F+  VS+ELR+PL+ I G+ + L  S +      ++
Sbjct: 252 LNEKNQKLEEDIEKERKIDEMRKEFISSVSHELRTPLSLIQGYAEGL-ISNVNESEEDRN 310

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y + I   +  +  LV D+L+L+ +++G  +++ S   +  L+N V     +   E N+
Sbjct: 311 FYCDVIMQETIKMNKLVRDLLNLSQIESGYFQIDKSEFDIIHLINYVLTKYKSIFTEKNV 370

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++    G+      D  R+ Q+ +  ++NA++   +   + + ++ D+     +V N G
Sbjct: 371 KVETELFGETCIVYGDMVRIEQVLTNYINNAINHVDENRIIKITSSIDSDKVRVNVFNTG 430

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             IPED  K ++N F  V  A      G GLGLSIV++  +LH     + + + GV
Sbjct: 431 KHIPEDSLKKLWNSFYKVDKARTRAYGGYGLGLSIVKAIQDLHKSAYGVENINHGV 486


>gi|222055079|ref|YP_002537441.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564368|gb|ACM20340.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 678

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 124/256 (48%), Gaps = 6/256 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L  ++VT   R +  L E NE L+  D +K+ F+   + +LR P+  +      L+ S
Sbjct: 422 AILALIDVTRERRDQHLLAEANERLKALDLLKSEFIYTATNDLRLPVAVLHSNCLQLRES 481

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L   Q ++++    S   L++L+ ++LD +  D     L      + D + EV   
Sbjct: 482 DTENLTETQCEHLDAAIESCDRLMDLIEELLDSSRFDLKDYALTIGKQNIMDPIREVYTV 541

Query: 658 IATKMHENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +A     N +++ V S      GSF  D+ +   + + ++ NA+ F+ +G  + +    D
Sbjct: 542 LAPFASGNGVQMTVTSLQSDIFGSFDGDKIKC--VLTNLIGNAIKFTPRGGEIGISVDAD 599

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           + +   S+ + G  IPE     +FN F  + +A    ++G GLGL++ +  I+ H G + 
Sbjct: 600 DLELKISISDTGEGIPEAYVTRIFNEFYHLKSAKGSLKKGSGLGLAVSKRIIDAHNGRIW 659

Query: 774 ISSSDEGVTTINCRIP 789
           + SS++  TT +  IP
Sbjct: 660 VESSEDRGTTFSFAIP 675


>gi|209695063|ref|YP_002262992.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208009015|emb|CAQ79245.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 697

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 127/250 (50%), Gaps = 8/250 (3%)

Query: 548 SVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           S+R +R   + +  +    A++ K+ F+  +S+E+R+PL  I+G  D+   S L   + +
Sbjct: 309 SIRKKRLQQIQKAKQEAETANKAKSQFLAMMSHEIRTPLNAILGMVDVFNESLL---SKE 365

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q ++++ +  S+ +LL +++D+LD++ ++AG   L+   I L + +         K  + 
Sbjct: 366 QYEWLDQMEVSAQLLLAIISDVLDISRIEAGTFVLDEQPIDLLETIINSTNYFKEKSKDK 425

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            I + V     + ++V AD  R++QI   ++ NA+ F+ KGS  I     +      ++ 
Sbjct: 426 GINLTVTVSHSVPNYVIADAARIMQIIFNLVGNAVKFTKKGSIWINITQTECNSTKIAIT 485

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I +D+  ++F  FV       R+  G GLGLSI++    L  G +S+ S     +
Sbjct: 486 DTGIGISKDVLNNLFQPFVQADSSITRQFGGSGLGLSIIKRLTELMNGVISVKSVINEGS 545

Query: 783 TINCRIPSKE 792
           T    +P KE
Sbjct: 546 TFTVTLPFKE 555


>gi|158338730|ref|YP_001519907.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308971|gb|ABW30588.1| two-component hybrid sensor and regulator, putative [Acaryochloris
           marina MBIC11017]
          Length = 805

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYI 613
           L++  EA   A   K  F+  +S+ELR+PL  I+GF+ ++ + + L   N K+++    I
Sbjct: 455 LSQAKEAAEMASRAKGKFLAKMSHELRTPLNAILGFSQMMAQDTTLSEANHKRNR---LI 511

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + S   LL L+NDIL LA +++G  +L      L+ LL  V+     ++ +  +  +V +
Sbjct: 512 NQSGEHLLGLINDILSLAKLESGKQELREGPFQLSTLLETVEGIFRLRIEQKGLAFRVKA 571

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSS 729
              L  ++  D Q+L Q+   +LSNA+ F+  G   +   +      +   F +++ G  
Sbjct: 572 TPDLPPYLFGDAQKLRQVLINLLSNALKFTPAGHIFLRIGSIPTPAGLTLRFEIEDTGEG 631

Query: 730 IPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I       +F  F  + +    + G GLGL I + F  L GG + +SS
Sbjct: 632 IAASELHKLFVPFEQTESGEKSKAGTGLGLPISQQFAQLMGGDIKVSS 679


>gi|86751330|ref|YP_487826.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574358|gb|ABD08915.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 877

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 25/250 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  RAE+A  E        +  K+ F+  +S+E+R+P+  ++G  + L  +KL   +
Sbjct: 354 DVTERWRAEQAEAE--------NRAKSDFLAMMSHEIRTPMNGVLGLANSLLETKL---D 402

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIM---KLNYSTIVLNDLLNEVKQSIAT 660
            +Q   V  I  S   LL ++NDILDL+ ++AG +   ++N+S  VL D    V+  +  
Sbjct: 403 PEQQHAVTTIRDSGDNLLRILNDILDLSKLEAGRIEFEQVNFSPSVLVD---AVRSIVEP 459

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718
                 + +K+  D +L  +   D QR+ Q+   +  NA+ F+ +G  T++L   R +  
Sbjct: 460 NARAKGLTLKIDVDPRLPPALTGDAQRIRQVLLNLAFNAVKFTDRGGVTIVLTCVRRDDA 519

Query: 719 FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           +    + V + G  IP D   S+F  F        RR  G GLGL+I    +   GG + 
Sbjct: 520 YATIEWQVTDTGIGIPLDRVGSLFTDFAQGDVSINRRFGGTGLGLAISRRIVEQMGGAID 579

Query: 774 ISS-SDEGVT 782
           ++S   EG T
Sbjct: 580 VTSKPGEGST 589


>gi|261342654|ref|ZP_05970512.1| sensor histidine kinase/response regulator [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315302|gb|EFC54240.1| sensor histidine kinase/response regulator [Enterobacter
           cancerogenus ATCC 35316]
          Length = 778

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 128/242 (52%), Gaps = 29/242 (11%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLN----EVKQSIATK 661
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L DL N    + +Q   + 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENLSGLQAQQKGLSF 380

Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           + E  + +  KV++DG          RL QI   ++SNA+ F+  G  V ++   + GD 
Sbjct: 381 VMEPTLPLPHKVVTDGT---------RLRQILWNLISNAVKFTPHGGRVAVRIRNEEGDM 431

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP++    +F  +  V ++  G+   G G+GL++ +      GG +++S
Sbjct: 432 LRFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSKRLAKSMGGDITVS 491

Query: 776 SS 777
           S 
Sbjct: 492 SQ 493


>gi|217970461|ref|YP_002355695.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507788|gb|ACK54799.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1007

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD  K +F+  VS+ELR+PL  I+G  +L++ +   S  +++ QY   + A++ +LL L
Sbjct: 473 QADRAKTAFLGTVSHELRTPLAGILGLLELVEDA---SSTTERKQYQAQMRAAAVLLLEL 529

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           + D+LD A ++AG ++++ ++  L D +N+V     T+     + +    D  L   V  
Sbjct: 530 LEDMLDFARIEAGGVQVDKASFSLRDTVNDVFAVQGTRAAVRGLALIAEVDPALPDAVQG 589

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           DR++L QI   ++ NA+ FS  G+ TV ++A        F+V+++G  I     + VF  
Sbjct: 590 DRRKLSQILLNLVGNAIKFSDTGAVTVRVRAGTQPDHLHFAVEDHGIGIEPARQQEVFEP 649

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FV     G+   G GLGL++    +   GG + + S+    TT++  IP
Sbjct: 650 FVQVRDSGRHHAGTGLGLAVCRRLVEAMGGAIELKSAPGQGTTVSFEIP 698


>gi|171912720|ref|ZP_02928190.1| PAS sensor signal transduction histidine kinase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 796

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 10/254 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKL 599
           T +++T    AE AL ++ +ALR+AD  K+ F+  +S+ELR+PL  +     L+   S++
Sbjct: 399 TVMDITARKDAEVALLQQTQALREADRKKDEFLAMLSHELRNPLAAVSHAAMLVNDASEM 458

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+         I   +  L +L++D+LD++ +  G + L    I    +L+   ++  
Sbjct: 459 EDLHWAAG----VIDRQTRQLAHLIDDLLDVSRITTGKIHLRKEVIDAAIVLDHACETAG 514

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             M +   R++     G+L    AD  R+ Q+   +L+NA  ++  G  + L A R  G+
Sbjct: 515 PLMIDRGHRLRRRYLQGELW-LEADATRIEQVVLNLLTNAAKYTPNGGQIELAARRQEGE 573

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV-SIS 775
            +  V +NG+ I  +    +F  F        R   G+G+GL+IV+    +HGG V ++S
Sbjct: 574 VVIQVCDNGTGIVPERLPEMFQLFTQGERSIARSEGGLGIGLTIVQKIAEMHGGRVEAVS 633

Query: 776 SSDEGVTTINCRIP 789
              +  +T    +P
Sbjct: 634 PGPQQGSTFTVHLP 647


>gi|160887742|ref|ZP_02068745.1| hypothetical protein BACUNI_00144 [Bacteroides uniformis ATCC 8492]
 gi|270295689|ref|ZP_06201890.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478675|ref|ZP_07937830.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156862773|gb|EDO56204.1| hypothetical protein BACUNI_00144 [Bacteroides uniformis ATCC 8492]
 gi|270274936|gb|EFA20797.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905186|gb|EFV26985.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 623

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 153/320 (47%), Gaps = 52/320 (16%)

Query: 474 LSPGTHIRNIAATCSRYY---NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           L+  ++IR I    ++Y     E+   + +  IITS       L GT+ L++  VL   +
Sbjct: 315 LASQSYIRQINTIKAKYQVDKAETASNNEYNKIITSI------LVGTMALVTLFVLLAIL 368

Query: 531 IPLPNAQTMLTFVNV-TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +     +  L+   + T  + AE A+             K+ F+ ++S+E+R+PL  + G
Sbjct: 369 LKRQREKVKLSTQKLATSRINAENAM-----------RAKSVFLSNMSHEIRTPLNALSG 417

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYST 644
           F+ LL    L     +Q    E I  +S +LL L+ND++DL++++ G     I + +  +
Sbjct: 418 FSSLLTEEGLDDETRRQCN--EVIQQNSELLLKLINDVIDLSSLEFGKLQFCIAQHDAVS 475

Query: 645 IVLN--DLLNEVKQSIA-----TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           I  N  D +N+VKQ+ A     T++ E  I               D  RL Q+   +L N
Sbjct: 476 ICRNVIDTVNKVKQTQAELTFTTELEEMPIE-------------TDDSRLQQVLINLLIN 522

Query: 698 AMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           A  F+ +GS ++LK  ++  D  +F+V + G  IP+D   ++F RF       Q  G GL
Sbjct: 523 ATKFTPQGS-IVLKLEKETDDTVLFTVTDTGCGIPKDKQANIFQRFEKLNENAQ--GSGL 579

Query: 757 GLSIVESFINLHGGHVSISS 776
           GLSI +  I   GG + I S
Sbjct: 580 GLSICQLIIEHIGGQIWIDS 599


>gi|114563673|ref|YP_751186.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114334966|gb|ABI72348.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 1132

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 125/238 (52%), Gaps = 6/238 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++TD    E++L    +   +A   +++F+ ++S+E+R+P+  IIGF+D+L      SL
Sbjct: 533 MDITDRKEMEQSLLIAKDKAEQAASARSAFLANMSHEIRTPMNAIIGFSDILLDD---SL 589

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            ++Q +++  I+ S+  LL+L+ND+LD A +D G   L      + + ++ V  ++  + 
Sbjct: 590 PAEQQKHLRTINQSAKSLLHLLNDVLDSAKLDKGKFDLELRDFSVIEEIDSVVSTLWLQA 649

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               + + V +S     S+     R+ Q+ + ++ NA+ F+++G   I  + + +G   F
Sbjct: 650 SSKGLFLNVNVSADVAISYHGAPDRIRQVLTNLIGNAIKFTAEGGVSIDVSVKPSGCIEF 709

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           ++ + G  +  +    VF+ F        RR  G GLG +I +  + L GG ++  S+
Sbjct: 710 AINDTGIGMTPEQLALVFDAFAQADASMNRRFGGTGLGTTISKQLVELMGGKITAKST 767


>gi|317477128|ref|ZP_07936369.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316906671|gb|EFV28384.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 479

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 122/217 (56%), Gaps = 4/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ +++G+LN +Q Q  + I  ++  LL
Sbjct: 251 FKELDTAKTTFISTISHELKTPISAILMSLQLLEDNRVGALNEEQEQLSKSIRENADRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            +  ++L++  V+AG +++        +L+    ++   +  + NI+I+V   + K+   
Sbjct: 311 GITGELLNMTQVEAGKLQMIPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKMPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   VI+  A+  G+F+   V++ G  I     +S+F
Sbjct: 371 FVDSEKVAWVLTNLLSNAIRYSKENGRVII-GAKQEGNFVELYVQDFGKGIDPRYHQSIF 429

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +R+       + +G GLGLSI + FI  HGG +++ S
Sbjct: 430 DRYF-RVPGTKVQGSGLGLSISKDFIEAHGGTLTVQS 465


>gi|310640016|ref|YP_003944774.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244966|gb|ADO54533.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L E+ + L  A + K+ F+  +S+ELR+PL +II    ++          +  QY
Sbjct: 215 KAKVILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQIINEQGKELDEDELYQY 274

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I AS   LL L+NDILDL+ V+AG M++    + + ++   +         + N+  
Sbjct: 275 SDLIYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQGMMMHFEVTAKDKNLEF 334

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDF-IF 721
            + + +       +D +R+ QI   +LSNA  F+ KG      ST  L      GD+ +F
Sbjct: 335 NLKVHEHIPDEIRSDSKRVQQILRNLLSNAFKFTHKGRVLLEISTQHLDRKGQEGDWVVF 394

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +VK+ G  I +     +F  F        R+  G GLGLSI   F  L GG + + S + 
Sbjct: 395 AVKDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGFIRLESEEG 454

Query: 780 GVTTINCRIP 789
             +T +  +P
Sbjct: 455 KGSTFSLYLP 464


>gi|266619522|ref|ZP_06112457.1| sensory box histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288868933|gb|EFD01232.1| sensory box histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 468

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 123/244 (50%), Gaps = 7/244 (2%)

Query: 543 VNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           VN  D +    A L   ++ L K +E + +F+ +VS++ RSPLT+I G+ + +    +  
Sbjct: 217 VNTRDEMGYLAATLNYMSDELNKMEEYQKTFIANVSHDFRSPLTSIKGYLEAILDGTIPP 276

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 +Y+  +   +  L  L   +L L T+D+    LN +   +N ++ +   S    
Sbjct: 277 --EMYEKYLTRVITETERLNKLTQGMLTLNTLDSK-GYLNRTNFDINRVIKDTAASFEGT 333

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E NI   +     +    AD  ++ Q+   ++ NA+ FS   ST+ ++A+        
Sbjct: 334 CEEKNINFDLTFSNNIQMVYADLGKIQQVMYNLIDNAIKFSHHDSTIYIQASGKYEKIFI 393

Query: 722 SVKNNGSSIPEDMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  IP+D  K ++ RF  S+  RG+ ++G GLGL+IV+  I  HG ++ + S+ E
Sbjct: 394 SVKDTGIGIPKDSIKKIWERFYKSDLSRGKDKKGTGLGLAIVKEIIQSHGENIDVVST-E 452

Query: 780 GVTT 783
           GV T
Sbjct: 453 GVGT 456


>gi|257481808|ref|ZP_05635849.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331009443|gb|EGH89499.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 595

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  ++++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPETREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E +     K  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 QNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|257093581|ref|YP_003167222.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046105|gb|ACV35293.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 436

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 132/274 (48%), Gaps = 24/274 (8%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L   V    ++PL     +L  ++VTD+              R+ + +++ FV +VS+EL
Sbjct: 176 LRTRVYALRVVPLGEQHKLLVSLDVTDA--------------RRVESMRSEFVANVSHEL 221

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           R+PLT + GF +       G++++ Q   +   +S  +  +L+LV+D+L L+ ++A    
Sbjct: 222 RTPLTVVSGFLEHFADE--GTMSADQRLHFARLMSDQTARMLSLVDDLLTLSRLEAEDAP 279

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            +   + + DLL ++  S    + E   R+ V   G   +   DR+ L   F  ++SNA+
Sbjct: 280 ASEEDVDMADLLAQL-LSEGQSLSEGRHRLAVSCRGP--ALRGDRKELHSAFGNLVSNAI 336

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
            ++  G  + ++    +G+ +FSV+++G  I       +  RF     RG+ R   G GL
Sbjct: 337 RYTPAGGAIAIEWTLRDGNGMFSVRDSGVGIAAQHLPRLTERFY-RVDRGRSRDTGGTGL 395

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GL+IV+  +  H   ++I S     +T     P+
Sbjct: 396 GLAIVKHILLRHQATLAIESQVGEGSTFCAEFPA 429


>gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1230

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ +   
Sbjct: 694 THKDITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIG---MLQLASRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q+ Y++    S+  LL ++NDILD + ++AG ++L      L+ +L+      A 
Sbjct: 751 QLTPQQADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNAL 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I ++  +S+F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGT 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVQS 933


>gi|168700127|ref|ZP_02732404.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Gemmata
           obscuriglobus UQM 2246]
          Length = 393

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   NEALR+AD  K+ F+  +++ELR+PLT I+   ++L+ +     +S  +   +   
Sbjct: 153 LARVNEALREADRRKDEFLALLAHELRNPLTPILNALEILRLAN----DSGDTVRRQRER 208

Query: 615 ASSTI--LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  L  LV D+LD++ +  G ++L    + + +L++       +++    + + + 
Sbjct: 209 MERQVAQLKRLVEDLLDVSRITTGKLRLAPERLTIQELIDSAVDMSRSQLEAAKLELVLN 268

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      DR RL Q+   +L+NA  F+  G  V +  A   G    ++++ G  I E
Sbjct: 269 VPAEQVVLTGDRVRLTQVLCNVLNNAAKFTEPGGRVFVSVAPHPGRVTVTIRDTGVGIAE 328

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
            +   +F  F  V       + G+G+GL++V   + +HGG V+  S   G   T    +P
Sbjct: 329 SVLPQLFGLFTQVDRTLSRSQSGLGIGLALVRRLVEMHGGTVTAHSDGPGTGATFTIHLP 388


>gi|167761216|ref|ZP_02433343.1| hypothetical protein CLOSCI_03621 [Clostridium scindens ATCC 35704]
 gi|167660882|gb|EDS05012.1| hypothetical protein CLOSCI_03621 [Clostridium scindens ATCC 35704]
          Length = 474

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 121/211 (57%), Gaps = 9/211 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLV 624
           + +K+S ++ +S++ R+PLT I+G   L+  S+   ++S +++Q V+ I   S  L+ ++
Sbjct: 247 EHMKSSMLRSISHDFRTPLTGIMGDCGLILESE--DMDSPERAQLVQDIMEQSMWLMKMM 304

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            +IL +  +++G   +N S  V++D++NE    +       N ++ +  +  +     D 
Sbjct: 305 ENILSMTKIESGQQFINKSPEVVDDVINEASLHVIGLRDRRNFQVSLPKEVIVADM--DA 362

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           + + Q+   +L NAM  + +G ++ L  + RDN  + F ++++G  + E++ + +F+ FV
Sbjct: 363 RMIAQVIINLLDNAMKHTKEGGSISLSVSYRDNKAY-FVIEDDGDGVLEELRERIFDEFV 421

Query: 744 SNAHRG--QRRGVGLGLSIVESFINLHGGHV 772
           S   +   Q+RG+GLGL+I +  ++ HGG +
Sbjct: 422 SGGDKSTDQKRGIGLGLTICKEVVHAHGGDI 452


>gi|86160424|ref|YP_467209.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776935|gb|ABC83772.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 376

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 26/287 (9%)

Query: 511 RKSLQGTLELLSDSVLEYSII----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           +++L+GT   L   +   + +    PL   + ++   +VTD+              R+A+
Sbjct: 108 KRALEGTARRLELPIQRRTYLAALSPLLRGEVLVLLRDVTDA--------------RRAE 153

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             +  FV + S+ELR+P+  I    + L +  +    + ++ +VE ++  +  L  L  D
Sbjct: 154 ATRRDFVANASHELRTPIAAIRAAAETLLSGAVEDPAAGRA-FVEIVARHAERLSRLTQD 212

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           +LDL+ +++       + + L  L  +V +  A+      I ++  I  G   +  AD +
Sbjct: 213 LLDLSRIESRQWTFELAPVDLGPLARQVLELFASAARAKGIALRAGIPAGA--TLRADAR 270

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
            L Q+   ++ NA+ +++ GS V L AARD   ++ SV + G  I       +F RF  V
Sbjct: 271 ALEQVLVNLVDNAVKYTATGS-VTLSAARDGDAWVISVADTGPGIERHHLPRLFERFYRV 329

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +     + G GLGL+IV+  +   GG V + S   G T    R+P+
Sbjct: 330 DSGRSRDQGGTGLGLAIVKHLVQGMGGEVGVESGAGG-TRFWMRLPA 375


>gi|315654108|ref|ZP_07907024.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|329919831|ref|ZP_08276782.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
 gi|315488804|gb|EFU78450.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|328937178|gb|EGG33606.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
          Length = 612

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++ 
Sbjct: 368 QKNENEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIA-PQFLGVIQNETERMIR 426

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---IKVISDGKLGS 679
           ++ND+L+L+ +D G++K++   + LND L+ +       +  + ++   I+ I   +   
Sbjct: 427 MINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALW 486

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  +++Q+   I++NA+ +S  G  + ++  + +   I SV + G  IP      +F
Sbjct: 487 VEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRKDLSRIF 546

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A   ++ G GLGL+I +  +  H G +   SS+   +T    IP
Sbjct: 547 DRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|298247019|ref|ZP_06970824.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549678|gb|EFH83544.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 648

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 14/238 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ D+ K++F+   S+EL++PL ++   T LL   KLG  +      VE + A   
Sbjct: 400 NSARQELDQRKDAFLGMASHELKTPLASLKLQTQLL-CKKLGKQDLSN---VEVVCARME 455

Query: 619 ILLN----LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             LN    LV+++LDL+ + AG ++  +  + L+ +L EV   +    H       V+  
Sbjct: 456 GQLNAITRLVDELLDLSRIQAGKLEYAHEMVDLDAMLKEVMDVL---QHIQTTHTIVVQH 512

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                FV  DR RL Q+F  +LSNA+ ++     + +           S+++ G  IP +
Sbjct: 513 AAPPVFVVGDRDRLAQVFLNVLSNAIKYAPDAPQIEVTLTTSAEAVTISIRDQGIGIPRE 572

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   +F RF       QR   G+G+GL IV   +  HGG + + S     +T +   P
Sbjct: 573 LQGRIFERFYRAVPLQQRAFPGLGMGLYIVSEIVKHHGGTIRVESERGKGSTFHITFP 630


>gi|293610389|ref|ZP_06692690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827621|gb|EFF85985.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 935

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +LN++Q+ Y++ I  SS  LL L+
Sbjct: 286 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNLYLQTIRKSSAHLLALI 343

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 344 NDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGD 403

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 404 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 462

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 509


>gi|317051421|ref|YP_004112537.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316946505|gb|ADU65981.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 295

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 136/253 (53%), Gaps = 25/253 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-------KTSKLGSL 602
           R  + L + N+  R+A+ +K+ F+  +  E  +P+++++ F+  L       K S +  +
Sbjct: 32  RMTQNLLDLNDKARQAEAVKSEFLSLIKNEFNNPISSLLSFSQALASGRHTEKISDIARM 91

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ Q +++           + +I   A +++G ++  +  + L++L+NEV+ S+   +
Sbjct: 92  THQELQRIDF----------HMKNIFAAAEIESGQIQNTFEDVYLDELVNEVRSSLRYII 141

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + ++ I++ ++   G+  +D  +L  I   +LSNA ++S     +++ A  D+G  +  
Sbjct: 142 ADKHLDIQLFNELS-GAVQSDSAKLFTILLNLLSNACEYSHVHGRIVVWAGVDDGSIVIF 200

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVSISSSD 778
           VK+ G  IP      +FNRF +  H G+ R   G+GLGLS+V+  + +L G   S SSS+
Sbjct: 201 VKDFGEGIPTQYHGKIFNRF-TQFHSGKNRPHTGLGLGLSVVKGLVESLDGSIESYSSSE 259

Query: 779 EGVTTINCRIPSK 791
           + V T+  R+P++
Sbjct: 260 QTVFTV--RLPAQ 270


>gi|239940053|ref|ZP_04691990.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239986542|ref|ZP_04707206.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 385

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 9/240 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T  VR         EA R+ +      +  V++ELRSPLT++ GFT  L        + +
Sbjct: 133 TGPVRRVVVCLRGTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQ 192

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           +   +E + A +  +  L+ ++LD++ +D+G ++L    + ++  +    Q++ T     
Sbjct: 193 KRLMLETVDADAGRVTRLIAELLDISRIDSGRLELRRQPVDISAAVARHIQALITGGQAA 252

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG----DFI 720
             R  V + G L    AD  ++ Q+   +L NA+       T+ I  AA   G       
Sbjct: 253 E-RFLVRTRGPLPDLWADPDKVDQVLGNLLENAVRHGEGTVTIEIAPAAAPGGCDEMGTA 311

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +V + G  IPE+    VF RF   + RG   G GLGL IV+  +  HGG +++     G
Sbjct: 312 VTVSDEGPGIPEESMSRVFTRFWRGSKRG---GTGLGLYIVKGIVEAHGGTITVDRGPRG 368


>gi|194365606|ref|YP_002028216.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348410|gb|ACF51533.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 907

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 114/230 (49%), Gaps = 11/230 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ALT      R+A+E K+ F+ ++S+E R+PL  + G T++L T++   L+ +Q + +  I
Sbjct: 365 ALTRAVAEARQANEAKSRFLANMSHEFRTPLNGLAGMTEVLATTR---LDDEQRECLNTI 421

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            AS+  LL LV ++LD++ ++AG +++ +    L D+L  +   +  +    ++  +V +
Sbjct: 422 QASTRSLLALVEEVLDISAIEAGKVRVEWHEFALADVLQAINLILTPQTRSKSLDYRVHV 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNG 727
            D      + D   L QI   ++ NA+ F+  G      + +  A  +     F + ++G
Sbjct: 482 DDNVPPRLLGDAGHLQQILLNLMGNAVKFTDSGYVHLRVSSLDAAGSERARLRFEIVDSG 541

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             +P  +   +FN F        RR  G GLG +I +  +   GG V  +
Sbjct: 542 IGVPVALRGRLFNAFEQGDVGLARRHEGTGLGTAIAKGLVESMGGQVGYA 591


>gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.]
          Length = 1155

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 9/223 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+ E L + D+ K  F Q++S+E R+P+T I G  +    S +G+              +
Sbjct: 503 EQAERLLQLDKQKTEFFQNISHEFRTPITLIQGPLE----SAVGTGEGLSYAQSAIALCN 558

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LL LVN +LDL  +DAG M+ ++    L D ++++ +S      +  + +    D +
Sbjct: 559 SRRLLRLVNQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYCEKKALHLTTELD-E 617

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             +   D ++  ++   +LSNAM F+ +G T+ +K        I  V++ G  I ++   
Sbjct: 618 CPTVYIDMEKFDKVVYNLLSNAMKFTPEGGTISVKLQSQGHHCILQVQDTGIGIVKEQIP 677

Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            +F RF   A   + R   G GLGL++V+  + LHGG V++ S
Sbjct: 678 HLFERF-RQAEGSENRSYEGSGLGLALVKELVELHGGRVTVDS 719


>gi|320322202|gb|EFW78298.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331853|gb|EFW87791.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 595

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  ++++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPETREADLLNTVTEEMQHLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E +     K  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 QNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|320353213|ref|YP_004194552.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121715|gb|ADW17261.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 564

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 12/235 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R L +K      A++ K+ F+  +S+E+R+P+  +IG ++LL  +    L  +Q  +
Sbjct: 24  RENRKLRKKARQADSANQAKSDFLAMISHEIRTPMNGVIGISELLLDT---DLQPRQKHF 80

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S+T LL L+N++LD + ++A  M L      L  LL ++            +R+
Sbjct: 81  AHLIRTSATSLLTLINNLLDFSKIEADKMVLESEPFDLRALLEQLLSLYRVTGKSKGLRV 140

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSV 723
               D  L   +V D  RL Q+   +L NA+ F+ +G+ ++L+  ++          F V
Sbjct: 141 NAEIDPSLSRQYVGDAHRLRQVLVNLLGNAVKFTEQGA-ILLRVRKERAGETAELLRFEV 199

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +++G  I E     +F  F        RR  G GLGLSI    I L  G     S
Sbjct: 200 EDSGVGIAEGSMDKLFQPFSQVDSSSTRRYGGTGLGLSICARLIKLMEGEFGARS 254


>gi|325109469|ref|YP_004270537.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324969737|gb|ADY60515.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 543

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 122/249 (48%), Gaps = 15/249 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA + L E +     A+++K+ F+ +VS+ELR+PLT I+GFTDL+   +L     + S  
Sbjct: 137 RANQELQELSRQAEAANQLKSEFLANVSHELRTPLTAILGFTDLVLDHELEPEVERASL- 195

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  +   LL+++NDILDL+ ++AG +++  S      ++ EV   +  +     I +
Sbjct: 196 --TIKQNGQHLLSILNDILDLSKIEAGHLRIERSDCSPGQIIEEVISLLRVRATAKGIDL 253

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFS 722
           +  S   + + + +D  R+ QI   ++ NA+ F+ +G      STV L+           
Sbjct: 254 RFHSKPDVPARIQSDPLRIRQIMLNLIGNAIKFTERGFVQVNMSTVELEG---KPQLRID 310

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  +  +    +F  FV       R+  G GLGL+I    + L  GH+S SS  E 
Sbjct: 311 VSDTGIGMTPEQLDRLFQPFVQADASITRQFGGTGLGLTICRRLLELMDGHISASSRPEL 370

Query: 781 VTTINCRIP 789
            +T     P
Sbjct: 371 GSTFQVVFP 379


>gi|288554580|ref|YP_003426515.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
 gi|288545740|gb|ADC49623.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
          Length = 607

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 34/355 (9%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV     DG I L N     L   +   +     I+++     R     +  DLF 
Sbjct: 271 HMTDGVLATDQDGHIILMNKRAEELLGVQSYEV-----IKSLLPEVLRLPETYELEDLFE 325

Query: 502 ---AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
              +I+  F D+ +     L   + SV++    P+    T+L  V   + +  +R     
Sbjct: 326 QTDSILLDFSDDEQEF---LIEANFSVIQEEDGPINGLITVLHDVTEQEKIEQDR----- 377

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISAS 616
                        FV +VS+ELR+PLT +  + + L+    G+L+  +   ++V      
Sbjct: 378 -----------REFVANVSHELRTPLTTMKSYLEALED---GALDEPELARRFVGVTQNE 423

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  ++ LVND+L L+ +D+   +L  + +     L+EV           +I       G 
Sbjct: 424 TERMIRLVNDLLQLSKIDSHDYRLQLTWVDFGQFLHEVIDRFEMVAQGRDIHFTRHISGH 483

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D+ +L Q+   I+SNAM +S +G  +         +   S+ + G  IP +   
Sbjct: 484 PTYVEVDKDKLTQVIDNIISNAMKYSPEGGNITTTLMHQGHNVRVSISDEGMGIPRENQS 543

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F+RF  V  A      G GLGL+I +  ++ HGG + +SS     TTI   +P
Sbjct: 544 KIFDRFYRVDKARARSIGGTGLGLAIAKELVHAHGGEIWVSSEYGSGTTIYFTLP 598


>gi|262280993|ref|ZP_06058776.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
 gi|262257893|gb|EEY76628.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
          Length = 935

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +LN++Q+ Y++ I  SS  LL L+
Sbjct: 286 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNLYLQTIRKSSAHLLALI 343

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 344 NDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGD 403

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 404 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 462

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 509


>gi|259500799|ref|ZP_05743701.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|302190751|ref|ZP_07267005.1| two-component system sensor histidine kinase [Lactobacillus iners
           AB-1]
 gi|309804083|ref|ZP_07698164.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|312871187|ref|ZP_07731285.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|312873315|ref|ZP_07733370.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|312874960|ref|ZP_07734979.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|325913630|ref|ZP_08175992.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
 gi|259167493|gb|EEW51988.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|308163851|gb|EFO66117.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|311089705|gb|EFQ48130.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|311091195|gb|EFQ49584.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|311093201|gb|EFQ51547.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|325476989|gb|EGC80139.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
          Length = 612

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++ 
Sbjct: 368 QKNENEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIA-PQFLGVIQNETERMIR 426

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---IKVISDGKLGS 679
           ++ND+L+L+ +D G++K++   + LND L+ +       +  + ++   I+ I   +   
Sbjct: 427 MINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALW 486

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  +++Q+   I++NA+ +S  G  + ++  + +   I SV + G  IP      +F
Sbjct: 487 VEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRKDLSRIF 546

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A   ++ G GLGL+I +  +  H G +   SS+   +T    IP
Sbjct: 547 DRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|228985667|ref|ZP_04145820.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229139203|ref|ZP_04267778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|229156149|ref|ZP_04284247.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|229196732|ref|ZP_04323475.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228586807|gb|EEK44882.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228627332|gb|EEK84061.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228644262|gb|EEL00519.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|228774062|gb|EEM22475.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 312

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGNDGDYIDITAYESNNMIAIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 302


>gi|225569041|ref|ZP_03778066.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM
           15053]
 gi|225161840|gb|EEG74459.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM
           15053]
          Length = 475

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 160/353 (45%), Gaps = 34/353 (9%)

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R L++  E  ++  T   NI     RY  E  G++    ++     E K     +E  S 
Sbjct: 129 RQLYEMSEKFINV-TGKENIIELGIRYIYEHTGYESVVELL----GEEKGADSAVEYTSK 183

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL---------------------TEKNEAL 562
             + + II +     +L   N       E+ L                      E+ +  
Sbjct: 184 DYVMFPIIGIVKQIGILKVFNHNQGFTVEQDLLVKTASNQIGIALDRELIYAEQERTKVE 243

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVEYISASSTILL 621
            + + +K+S ++ +S++ R+PLT I+G   L+  SK +G    ++ Q ++ I   S  L+
Sbjct: 244 MEREHMKSSMLRSISHDFRTPLTGILGDCSLIIDSKEMG--REEEKQLLKDIMEQSMWLM 301

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +V +IL++  +++G   +  S  V++D++N  ++ +      +     V+   ++    
Sbjct: 302 KMVVNILNMTKIESGQQFVEKSGEVIDDVINGAERHVIGLGQRDY---HVVLPKQVIMAQ 358

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D + ++Q+   IL NA+  + +G  +IL A+        S++++G  I E M + +F+ 
Sbjct: 359 MDGKMIMQVLVNILDNAVKHTQEGGKIILTASFRRKRLYVSIEDDGPGIEEGMEEKIFDE 418

Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           FV  S     Q+RG+GLGL+I    ++ HGG +   +  EG       +P+++
Sbjct: 419 FVSLSGESMDQKRGIGLGLAICRQVVSAHGGEIWAENRSEGGARFTFWLPAEQ 471


>gi|168700922|ref|ZP_02733199.1| multi-sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 723

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 5/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +   L      ++ F+  V++ELR+P+  I     L++ S  G  N+  ++  + I
Sbjct: 481 ALARRGAGLEAEARRRDDFLAAVAHELRNPIAPIQNAAQLVRMSAGG--NAVAARAADMI 538

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L  +V D+LD +    G ++++   + L  L+    +     +  N I +   +
Sbjct: 539 ERQTGALRRIVEDLLDASRAGQGKLRVDLVPLDLAPLVRAAVEDARAALEANGIALAART 598

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                    D  RL Q+ S +L+NA  F+ +G  V +    D      SV + G  I   
Sbjct: 599 PAAPVRVRGDAVRLRQVISNLLTNAGKFTDRGGRVTVALGADATAASLSVADTGIGIAAA 658

Query: 734 MCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
             + VF  F  +  +    R G+GLGL++V S   LHGG  S +S   G  TT   R+P
Sbjct: 659 DLRRVFQAFAQSEGSLERSREGLGLGLALVRSIAELHGGSASAASDGPGHGTTFTVRLP 717


>gi|83816058|ref|YP_446610.1| two component system histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83757452|gb|ABC45565.1| Two component system histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 755

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 161/344 (46%), Gaps = 30/344 (8%)

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L  P + + W   ENR +    +  +A     Y         F A   + D E +++ G 
Sbjct: 410 LGRPFWETPWWETENRSAVREKVERVAE--GEYVR-------FEAEHVTPDGEARTVTGI 460

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKN 570
           +  ++    E   I        +T  ++T+  R  R L +  E          +A  +K+
Sbjct: 461 MRPVTGEEGEVVSI-------FVTARDITERKRKARRLKQAKEQAELSKLEAEEASRMKS 513

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           + + ++S+E+R+PLT IIGF + +     G  +   + + + I  S   LL+ ++ +L+L
Sbjct: 514 AMLANMSHEIRTPLTGIIGFAEAIGDEIDG--DGGVAHFADLIEDSGRRLLDTLDAVLNL 571

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + ++AG M L    I L     +V +  A +  ++ + ++V ++ + G++ AD   L  +
Sbjct: 572 SKLEAGQMTLESRPIDLAGQARQVAREFAAEADDSGLALEVEAE-EAGAW-ADEGGLQIV 629

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +LSNA+ ++ +G TV ++  R++G+ +  +++ G  +   + +S+F  F   +    
Sbjct: 630 LQNLLSNAIKYTEEG-TVQVRTYREDGEAVLQIEDTGIGMDPAVAESLFEPFRQGSEGLS 688

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           R   G G+GL++ +      GG + + +     +T   R+P+ +
Sbjct: 689 REYEGTGIGLAVTKKATEQMGGSIDVETEKGQGSTFTARLPAAD 732


>gi|71733915|ref|YP_272558.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554468|gb|AAZ33679.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|330986816|gb|EGH84919.1| sensory box histidine kinase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 595

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  ++++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPETREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E +     K  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 QNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|23099619|ref|NP_693085.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22777849|dbj|BAC14120.1| two-component sensor histidine kinase involved in phosphate
           regulation [Oceanobacillus iheyensis HTE831]
          Length = 453

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 164/354 (46%), Gaps = 27/354 (7%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D++  G+ +    G + + N  F  ++  EE+      H+         YY+  +  ++
Sbjct: 122 VDNMQSGLVLIDEKGYVHVVNRKFLEMFGEEESNYR--GHL---------YYDVFENENV 170

Query: 500 FAAIITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
              +  +F  E    +  +  E L+   +E    P+ N + ML       +V     +TE
Sbjct: 171 HETVQKTFLYEETVKKSFVHREGLNKIYVEVVGAPIFNERNMLK-----GAVLVLYDITE 225

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
               L+K ++++  FV +VS+ELR+P+T+I GF + L  + +    +K  +++E I   S
Sbjct: 226 ----LKKLEKMRKDFVANVSHELRTPITSIRGFAETLLDNNITDPATK--EFMEIIYKES 279

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L+ D+L L+ ++    +L      +  ++ E+   +  K    N+   +    +L
Sbjct: 280 HRLQLLIEDLLALSRLEREDFRLLIDNYDVRQMVEEILPQLHQKAENKNLTFDLEVPDQL 339

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            +  AD+ R+ Q+   ++ N++ ++  G  + L  + +     F VK++G  + E     
Sbjct: 340 -TMRADKDRMKQVLINLIDNSIHYTPSGGDICLAISEETDVIHFQVKDSGIGMDEKSQTR 398

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           VF RF  V  A      G GLGL+IV+  + +H G + + S+    TTI+  IP
Sbjct: 399 VFERFYRVDKARSRNTGGTGLGLAIVKHIVEVHKGKIDVESTLNQGTTIHIYIP 452


>gi|317470855|ref|ZP_07930236.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901682|gb|EFV23615.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 1062

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 130/256 (50%), Gaps = 23/256 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +AL    EA +KA+E K+SF+  +S+++R+P+  I+G T  +  S++     K  + 
Sbjct: 659 RNRKALLAAYEAAKKANEAKSSFLAQMSHDIRTPMNAIMGMTS-IAASRIND-PEKVREC 716

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHEN 665
           +  I  SS+ LL+L+N+ILD++ ++ G ++L      L +L+ ++    +     K  E 
Sbjct: 717 LTKIDMSSSHLLDLINEILDMSKIEKGKIELTEEPFCLRELITDINSITRPEALQKGQEL 776

Query: 666 NIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------D 718
             R + V+       F+ D  R+ Q+   +++NA+ ++  G  +I++     G       
Sbjct: 777 LFRTVDVVHT----DFIGDAGRIRQVLINLITNAVKYTQNGGRIIVEVQEVTGRTPGAAS 832

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F+F+V++NG  +  D    +F  F        RR  G GLG+SI +  ++   G++   S
Sbjct: 833 FVFTVEDNGIGMDPDFLNYIFVPFSRADDSKVRRVQGTGLGMSIAQGIVSAMNGNIQAES 892

Query: 777 -SDEG---VTTINCRI 788
              +G   + T+N +I
Sbjct: 893 RKGQGSRFIVTLNLKI 908


>gi|296157808|ref|ZP_06840642.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295892054|gb|EFG71838.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 656

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 116/231 (50%), Gaps = 7/231 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER L  +  A + A+E    K+ F+  +S+ELR+PLT ++    +L+   +  L  +   
Sbjct: 271 ERLLASEQAARQTAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEM--IPHLPDQARA 328

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  +  +   L++D+LDL  V  G ++L+  T+ ++D+++ V +   +++      
Sbjct: 329 SVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHDVMDSVLELFRSEIQVKQQD 388

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V  + +    +ADR RL Q+   ++ NA  F+  G  + ++   +      +V++ G 
Sbjct: 389 VHVHKNARHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTRDERMQVQIAVEDTGI 448

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            I  D    +FN F        R+  G+GLGL+I ++  ++HGG V+  S 
Sbjct: 449 GIEPDQIGKLFNAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTVTAQSP 499


>gi|229824433|ref|ZP_04450502.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
 gi|229786034|gb|EEP22148.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
          Length = 616

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 116/234 (49%), Gaps = 11/234 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTILL 621
           K ++ +  FV +VS+ELR+PLT+I  +T+ L+    G+   +    Q++  I   +  ++
Sbjct: 373 KTEQERRDFVSNVSHELRTPLTSIKSYTEALRE---GAWQDEVIAPQFLNVIQLETDRMM 429

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN----NIRIKVISDGKL 677
            ++ ++LDL+ +  G  KLN   I    +++ +       + +N      ++K     + 
Sbjct: 430 RMIGNLLDLSKIHEGQYKLNLEYIDFKRMVSHILDRFEFMLEQNPDQKKFKLKRDFTSRE 489

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D+ R+ Q+   IL+NA+ +S  G  +++K    +     S+K+ G  IP+     
Sbjct: 490 IYLEIDQDRVTQVIDNILNNAIKYSPDGGVIVVKIEDSHSHVHLSIKDQGLGIPQKDIPH 549

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF  V  A   ++ G GLGL+I +  I LHGG +  +S +   +T    +P
Sbjct: 550 LFQRFYRVDKARSREQGGTGLGLAISKEIIELHGGKIWATSVEGKGSTFGFDLP 603


>gi|149175132|ref|ZP_01853755.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846110|gb|EDL60450.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 568

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 168/365 (46%), Gaps = 44/365 (12%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWK---------------TEENRLSPGTH------IRNIAA 485
           V     +GRI +++P+  S W                TE +R  P  H      +   +A
Sbjct: 25  VITMTEEGRILMASPSIESAWGWNTEEISGKNIYELLTEASR-KPCLHCISECVVSGNSA 83

Query: 486 TCSRYYNESD-GWDLFAAIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPNAQT-MLT 541
            C       D    LF  I+   +D   S +G+  + +  D    +    L + QT  L 
Sbjct: 84  VCELVVKRKDQSCSLFELILHQLED---SCEGSQFIGIFRDKSERFR---LQDQQTEYLE 137

Query: 542 FVNVT--DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            + +T  +  R E  L      + +A+++KN F+ ++S+E+R+P+T IIG++++LK S  
Sbjct: 138 RLKLTRRELKRKEFELKSALNMVEQANQVKNEFLSNMSHEIRTPMTAIIGYSEVLKES-- 195

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             + ++Q   +E I  +   LL ++NDILD++ ++ G  +L         ++ EV     
Sbjct: 196 -VIQAEQHDLIETIQRNGDHLLQVINDILDISKIELGQCELKTEACFPLQIVQEVIALHR 254

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            K  +  +R+   I +    +  +D  RL Q+ + ++SNA+ F++ G   I     +  +
Sbjct: 255 PKAVQKGLRLLTNIHESIPETIQSDPIRLKQVLNNLVSNAVKFTNNGFVRIEIRTFNRSN 314

Query: 719 F----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           F     F+V + G  I +D  K +F+ F        R   G GLGL++ +  + L GG +
Sbjct: 315 FERLLQFNVADTGIGISKDNLKRIFDPFTQADSSMSRPYSGTGLGLTLSQKLVQLLGGKL 374

Query: 773 SISSS 777
           S+ S+
Sbjct: 375 SVQST 379


>gi|187478274|ref|YP_786298.1| two component sensor kinase for capsular biosynthesis [Bordetella
           avium 197N]
 gi|115422860|emb|CAJ49388.1| putative two component sensor kinase for capsular biosynthesis
           [Bordetella avium 197N]
          Length = 1142

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 19/259 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F +VT   + ER   E   A   A+  K++F+  +S+E+R+PL  I G  +LL  S   
Sbjct: 486 AFTDVTLEKQMERVSQEARHAADSANAAKSAFLAAMSHEIRTPLNAIHGNLELLSHS--- 542

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+S Q  +V+ I ++S  LL++V+D+LD + ++AG ++L +    + D+        A 
Sbjct: 543 ALDSAQRAHVDTIRSASDSLLSIVSDVLDFSKIEAGELRLEHLEYDIQDIAAR-----AL 597

Query: 661 KMHENNIRIK-VISDGKLG-----SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            M     R K ++  G+ G         D  R+ Q+ + +LSNA+ F++ G  V L+  +
Sbjct: 598 IMFSTTARAKGLVLGGEFGLHTTQPMRGDPTRVAQVINNLLSNAVKFTAAGK-VTLRMTQ 656

Query: 715 D--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           D      + +V+++G  +  +    +F  F        RR  G GLGL++        GG
Sbjct: 657 DATPPQLVLTVEDSGIGMSPEQMSMLFQAFTQADITINRRFGGTGLGLALCSRLSQAMGG 716

Query: 771 HVSISSSDEGVTTINCRIP 789
            +S++S     +    R+P
Sbjct: 717 TLSVTSKAGQGSCFTLRLP 735


>gi|125974330|ref|YP_001038240.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|256003450|ref|ZP_05428440.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|125714555|gb|ABN53047.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|255992474|gb|EEU02566.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|316941477|gb|ADU75511.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 1313]
          Length = 363

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 143/299 (47%), Gaps = 19/299 (6%)

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C    N  D  ++    +TSF DE    +G          +Y + P  NA  +L+     
Sbjct: 72  CRLIKNTPDLKNIPVIFLTSFSDEESIRKG----FESGGQDYVVKPF-NASELLS----- 121

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+    L  + E+L++A++  +SF   V+++L+SPL ++    +LL +  L  L+S  
Sbjct: 122 -RVKTHLMLKCQAESLKEANKELDSFCYTVAHDLKSPLLSLNKLVELLVSDHLNQLDSAG 180

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  I   S+ +++ V+ +L+ + +    M++N+  I LN+L  EV   + +   + +
Sbjct: 181 KELVYNIREKSSEIIHTVDRLLEFSKMCE--MQVNFEIIDLNELFTEVCNELKSLEPQRD 238

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK 724
           IRI +     L     DR  +  + S ILSNA  ++    T I+  +++ D  +++F VK
Sbjct: 239 IRIHI---QPLPKVYGDRLLMRLLISNILSNAFKYTRNRQTAIIEIQSSEDGNEYVFFVK 295

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           +NG+         +F  F     + +  G G+GL+I +  +  H G   ++   D+G T
Sbjct: 296 DNGAGFDMKYSSRLFGVFQRLHSKDEFEGSGVGLAICQRILKRHNGRAWMTGEIDKGAT 354


>gi|58696692|ref|ZP_00372242.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58698386|ref|ZP_00373299.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630987|ref|YP_002727778.1| sensor histidine kinase [Wolbachia sp. wRi]
 gi|58535099|gb|EAL59185.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58537134|gb|EAL60244.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592968|gb|ACN95987.1| sensor histidine kinase [Wolbachia sp. wRi]
          Length = 475

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 9/236 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY-- 612
           L +  EAL + +  K  F   V++ELR+PL  IIGF +L+K   LGS++   SQY EY  
Sbjct: 226 LQQIKEALEQENANKLKFFASVTHELRTPLNAIIGFAELIKNETLGSMDD--SQYKEYAD 283

Query: 613 -ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  + T LL L+ND+LD +  ++  + +      LN +++     +  K+ E  I +K 
Sbjct: 284 DIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCVNMLLPKLKEAGINLKK 343

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSS 729
               K    +AD +R+ Q+   +LSN++ F+ K   +  ++K   +         +NG  
Sbjct: 344 EMTNKQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKENIEKNLLTIEFHDNGIG 403

Query: 730 IPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           I +     V + F   A  G R  G G+GL + +  + L GG   I S  +  TTI
Sbjct: 404 IMQQDIYKVMSVF-GQADSGYRNEGTGIGLPLSKKLVELMGGTFDIKSEAKLGTTI 458


>gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
 gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
          Length = 1364

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 122/244 (50%), Gaps = 15/244 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKMHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +
Sbjct: 675 PGAAQDMVTKIDRSARTLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSL 734

Query: 663 HENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
               + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 735 SAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG +
Sbjct: 793 NKVKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGEL 852

Query: 773 SISS 776
            + S
Sbjct: 853 EVES 856


>gi|323138439|ref|ZP_08073508.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322396235|gb|EFX98767.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 742

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 4/230 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSLNSKQSQYVEY 612
           L +  E L   D  K+ F+  +++ELR+PL  I    +LL   TS+  S   K+   +  
Sbjct: 500 LKKIEEELLSVDRRKDEFLATLAHELRNPLGAISNSVNLLNILTSETSSAEEKKRASLAR 559

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      L  +V+D+L++  +  G ++L    + L ++L++        + E   ++ + 
Sbjct: 560 IKRQVNHLKRIVDDLLEITRIKHGKIELKKERVELGEILSQAVDLCQPLVQEKGHQLTIE 619

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D  RL+QIF  +L+NA+ F+  G  + + AA    + I  V++ G+ +P 
Sbjct: 620 LPSRPLEVDGDPVRLVQIFGNLLNNAVKFTDAGGRIDIAAAHGEKEAIVRVRDTGAGLPP 679

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +   S+F+ F  V    R    G+G+GL++    I LHGG +   S   G
Sbjct: 680 ETLGSIFDMFAQVKTGSRIASGGIGVGLALSRGLILLHGGRIDAHSDGPG 729


>gi|298249641|ref|ZP_06973445.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547645|gb|EFH81512.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 895

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 163/361 (45%), Gaps = 38/361 (10%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRS---LWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           ++ +S+G+ + G DG +  +NP   S   L  TE  R      I+ +    SR   E + 
Sbjct: 552 MESMSDGLVLTGIDGTVLYANPGASSITGLPITELERHP----IQVLYEALSRSAMEPE- 606

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM---LTFVNVTDSVRAE- 552
                      +  RK LQ T     + ++E      P+AQ     L F +V D      
Sbjct: 607 -----------ECARKMLQATSAEKPELLIELE----PHAQRQVIHLRFFDVGDEAGRTI 651

Query: 553 -RALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            R L  ++    R+ DE K + +  V +ELR+PL  I G+   L    +      Q  ++
Sbjct: 652 GRGLLLRDVTREREVDEFKTTLLGAVGHELRTPLAAIKGYASTLLQEDVTWPIEDQRHFL 711

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + IS+ +  +  LV+++LDL+  +AG++ L  +   L ++   V  +IA   H + +   
Sbjct: 712 QTISSKADYMAQLVSNLLDLSRQEAGLLLLKRAPARLQEI---VTHTIAETEHPDVMVTT 768

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I D  L     D  R+  +   ++ NA+ +  +G   I    ++N   I +V +NG  I
Sbjct: 769 RIPD-DLPLVDIDSGRIEVVLRNLVMNALAY-GEGEIHISAKLQENA-VIVAVTDNGPGI 825

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  VF RF    H  QR   G GLGL+I ++FI  HG  +   S+++G TTI+  +
Sbjct: 826 APTELPHVFERFYRAQHGRQRHSGGTGLGLAICKAFIEAHGTSIWAESAEQG-TTISFAL 884

Query: 789 P 789
           P
Sbjct: 885 P 885


>gi|296188285|ref|ZP_06856677.1| His Kinase A (phosphoacceptor) domain protein [Clostridium
           carboxidivorans P7]
 gi|296047411|gb|EFG86853.1| His Kinase A (phosphoacceptor) domain protein [Clostridium
           carboxidivorans P7]
          Length = 486

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 120/236 (50%), Gaps = 10/236 (4%)

Query: 555 LTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           L EKN+ L       RK DE++  F+  VS+ELR+PL+ I G+ + L  S +      ++
Sbjct: 252 LNEKNQKLEEDIEKERKIDEMRKEFISSVSHELRTPLSLIQGYAEGL-ISNVNESEEDRN 310

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y + I   +  +  LV D+L+L+ +++G  +++ S   +  L+N V     +   E N+
Sbjct: 311 FYCDVIMQETIKMNKLVRDLLNLSQIESGYFQIDKSEFDIIHLINYVLTKYKSIFTEKNV 370

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++    G+      D  R+ Q+ +  ++NA++   +   + + ++ D+     +V N G
Sbjct: 371 KVETELFGETCIVYGDMVRIEQVLTNYINNAINHVDENRIIKITSSIDSDKVRVNVFNTG 430

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             IPED  K ++N F  V  A      G GLGLSIV++  +LH     + + + GV
Sbjct: 431 KHIPEDSLKKLWNSFYKVDKARTRAYGGYGLGLSIVKAIQDLHKSAYGVENINHGV 486


>gi|213692630|ref|YP_002323216.1| integral membrane sensor signal transduction histidine kinase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524091|gb|ACJ52838.1| integral membrane sensor signal transduction histidine kinase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458781|dbj|BAJ69402.1| two-component sensor kinase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 357

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 13/235 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  E    L  AD+++   + +VS+ELR+P++ +    + +       +       +E 
Sbjct: 116 RSFNEMAGELEHADKMRRDMIANVSHELRTPVSALQAMVENMADG----VTEPTPANLEG 171

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIK 670
           I   +  L +L+  +LDL+ ++AG   LN       D L+E  +   IA   H ++I + 
Sbjct: 172 ILTQTHRLSDLIAFLLDLSRIEAGAASLNIEKFNFADFLDETIEPLEIADGGHAHDIHVT 231

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGS 728
           V +D    S   D+ RL Q+F+ I++NA+  S+ G+TV++ A  D   G  + +V N GS
Sbjct: 232 VPADI---SMEGDQDRLRQLFTNIIANALKHSADGTTVLVDAHEDENQGTIVTNVVNFGS 288

Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            I       +F RFV        +  G GLGLSI      LHGG V +     G 
Sbjct: 289 QIALSDRSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVKVVDDTRGA 343


>gi|192361265|ref|YP_001984106.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
            domain-containing protein protein [Cellvibrio japonicus
            Ueda107]
 gi|190687430|gb|ACE85108.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein protein [Cellvibrio japonicus Ueda107]
          Length = 1260

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+PL  ++G+T LL       L   Q + ++ I  +S  LL L+ND+LDL+
Sbjct: 813  FLANMSHEIRTPLNAVLGYTQLLMRDP--QLAGNQRERLQLILNASQRLLGLINDVLDLS 870

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
             +++G + L      L+  + E+   IA + +   + + +  D    + V  DRQ+L QI
Sbjct: 871  KIESGALNLRQDYFDLHQEMQEIHAIIAERANAKGLSLGLEIDFPAPNIVRGDRQKLGQI 930

Query: 691  FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
               +L NA+ F+ +GS  ++     +GD++ F + + G  I     + +F+ F       
Sbjct: 931  LLNLLGNAVKFTHQGSVNLMLTR--HGDWVDFVISDTGPGIAPQELEQLFSAFRQGQAGQ 988

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               G GLGL++        GG + ++S     T  + R+P
Sbjct: 989  DSGGTGLGLTLSRHLAQGMGGSLELTSQLGEGTRAHLRLP 1028


>gi|153954091|ref|YP_001394856.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219854704|ref|YP_002471826.1| hypothetical protein CKR_1361 [Clostridium kluyveri NBRC 12016]
 gi|146346972|gb|EDK33508.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219568428|dbj|BAH06412.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 437

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 178/369 (48%), Gaps = 37/369 (10%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           + I +L +   V+  +G I L N   R L+     +L+    I   A +C +YY+  +  
Sbjct: 25  DIIQNLPDAFFVYNKEGYIVLLNAMARKLYP----QLNAQKTIEE-AHSCLQYYDLDNNI 79

Query: 498 DLFAAIITSFDDERKSLQGTLELLSD----SVLEYSIIPLPNAQTMLTFVNVT------- 546
            L     T    + K ++    ++       ++E +  P+ + +  L +V  +       
Sbjct: 80  ILPDNFPTRRAFKGKKVKNERVVIKRCHKIQIIEVNATPIFDEENNLVYVVASHHDVSEL 139

Query: 547 ----DSVRAER-----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI---IGFTDLL 594
               + ++A++     A   +NE L +A + K  F   +++E ++P++ I   +   DL+
Sbjct: 140 IKNQEEIKAQQEKLLNAEKSRNEILEEAIKSKEEFFYLMTHEFKTPISVINLALQAIDLM 199

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              ++     K ++Y+  I  +    L LVN++LD+A +D+G +K+N S   +  ++  +
Sbjct: 200 YKKEI---TEKVNKYLNTIKQNVNRQLRLVNNLLDIARIDSGHLKMNKSCFSIIHVIEAI 256

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             S+     + N+ +K  ++    +  +D ++L +I   +LSNA+ F+  G ++I+  + 
Sbjct: 257 VNSVQLYAKQKNVILKFNTNLSKKNIYSDEEKLERILLNLLSNALKFTPSGKSIIVTLST 316

Query: 715 ---DNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
               NG+ I  SV++ G  IP D  K++F RF  V ++   Q  G GLGL +V+  +N  
Sbjct: 317 KKYKNGEMISISVQDEGMGIPLDKQKTIFERFGQVDSSLSDQAEGTGLGLHLVKLLVNSL 376

Query: 769 GGHVSISSS 777
            G + ++S+
Sbjct: 377 DGEILLNST 385


>gi|89896384|ref|YP_519871.1| hypothetical protein DSY3638 [Desulfitobacterium hafniense Y51]
 gi|89335832|dbj|BAE85427.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 305

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 10/241 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ +    L   + ++  F+ +VS+E++SPLT+I GF  LLK   L +   ++ +Y E I
Sbjct: 67  AINDMARGLGNLETMRQDFISNVSHEIQSPLTSISGFAGLLKKEDLPT--EQRRRYAEII 124

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L +L  ++L L T+D   + LN     L+  L  V   +  +    N+ ++  +
Sbjct: 125 EGESKRLSSLSENLLKLTTLDNSKLSLNRQDFRLDKQLEHVALLLEPQWSAKNLTLE--A 182

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
           D  L     D   L Q+++ +L NA+ F+ +G  + ++  R+      ++ + G  I PE
Sbjct: 183 DLPLCILCGDEDLLSQVWTNLLHNAIKFTPEGGQISIELKREGNTAQVTIGDTGIGIGPE 242

Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D    +F RF   A + + R   G GLGLS+V+  ++LH G + + S+    TT    +P
Sbjct: 243 DRIH-IFERFY-KADKARARSAGGNGLGLSLVKKIVDLHEGSIGVESTIGKGTTFEIFLP 300

Query: 790 S 790
            
Sbjct: 301 G 301


>gi|332528024|ref|ZP_08404058.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112598|gb|EGJ12391.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 630

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 2/234 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+   AE AL E      +A   K+ F+  + +E+R+PL  I+GF  +L    +  L 
Sbjct: 241 DVTEQRLAEAAL-EAQRVAERASRAKSEFLSRLGHEIRTPLNAIVGFAQMLLRGAVVPLA 299

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  Q V +I+ +   L  L+ D+ DL+ ++AG ++L  S + L  +++EV         
Sbjct: 300 LEHRQAVAHIADAGRHLERLIADLTDLSLIEAGTVRLESSVVDLGQVIDEVLHEAHASAA 359

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              ++++     +    +AD  RL Q+ + ++SNA+ ++     V++   RD   +  +V
Sbjct: 360 MRRVQLRSALPAERLLVLADGTRLRQVLANLVSNAIKYNRLHGEVVVAVRRDGAGWCIAV 419

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
           ++ G  +      ++F  F           G G+GL +    +   GG + +SS
Sbjct: 420 RDTGLGMSPAQLAALFEPFNRLGREASGIPGTGIGLVLTRELVEAMGGSLEVSS 473


>gi|311104326|ref|YP_003977179.1| sensor kinase CusS [Achromobacter xylosoxidans A8]
 gi|310759015|gb|ADP14464.1| sensor kinase CusS [Achromobacter xylosoxidans A8]
          Length = 478

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 13/223 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST---ILLNLVNDIL 628
           F   +++ELR+P+TN++  T +     LG   S + +Y E + ++      +  ++ D+L
Sbjct: 260 FSADIAHELRTPVTNLVTQTHV----ALGQPRSNE-EYREILYSNLEEFDRMGRMIGDML 314

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA  +     L  STI L++L+  +         ++ I + V   G +GS  ADR+ L 
Sbjct: 315 FLAQTENDPRNLRLSTIDLSELVRSLFDYFEALAEDSGITLGV--KGAIGSIAADREMLT 372

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           +  + +LSNA+  + +G ++ +  ++D      SV N G  IPE     +FNRF  V  A
Sbjct: 373 RALNNLLSNAIRHTPRGKSITVLLSQDEQWTTISVVNPGEKIPEPDLPKLFNRFYRVDPA 432

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    G GLGL+IV+S    HGG V+++SS E VT  +  +P
Sbjct: 433 RQRNTAGAGLGLAIVKSIAEAHGGSVAVTSS-ELVTRFDLALP 474


>gi|298387530|ref|ZP_06997082.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259737|gb|EFI02609.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 639

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 120/235 (51%), Gaps = 8/235 (3%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S+   R L   N+A+ KA  +K+SF+QH+++E+R+PL +IIGF+ L+     G    +  
Sbjct: 401 SLSLNRKLDAANKAVIKASHMKSSFIQHITHEIRTPLNSIIGFSSLMAAG--GLTQEEME 458

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   + +S+  LL+LVN+++D+A +D+    +    + ++    E    I   + E  I
Sbjct: 459 EYARQMESSNAYLLDLVNNVIDIADMDSQTDDIPKKPVSVDACCQECLGLIRQNLKE-GI 517

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKN 725
           +++ +              + ++   +L+NA  F+  G  + L  A D  + +  F +++
Sbjct: 518 KLQYMPSSTPVEVCTVEIWMKRVLLGLLNNANKFTESG-FICLSYAEDKPNRLVRFIIED 576

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +G  I E+   S+F RF       Q  G GLGLSI+   + L  G+V + +S  G
Sbjct: 577 SGPGIDENYRDSIFERFAKVDAFTQ--GTGLGLSIIRQIMELVDGNVYLDTSYAG 629


>gi|229143069|ref|ZP_04271503.1| hypothetical protein bcere0012_2440 [Bacillus cereus BDRD-ST24]
 gi|228640398|gb|EEK96794.1| hypothetical protein bcere0012_2440 [Bacillus cereus BDRD-ST24]
          Length = 225

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 113/216 (52%), Gaps = 3/216 (1%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+++R+PLT+IIG+ D LK     S   KQ +Y++ +   S  L +LV++I ++A +DA
Sbjct: 4   ISHDIRTPLTSIIGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKHLVDEIFNMAKLDA 62

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
               L    +  +++  EV      ++ ++NI +++         +AD   +++I   ++
Sbjct: 63  NEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQIRIPESTCPIIADHLSIMRIIGNLM 122

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR-FVSNAHRGQR-RG 753
            NA+ +   G T+ ++    + ++   + + G  IP+   ++VF R + S   R     G
Sbjct: 123 KNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDLQNVFERMYRSEQSRNSSFGG 182

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI ++ +  +GGH+ + S+    TT    IP
Sbjct: 183 SGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIP 218


>gi|237809486|ref|YP_002893926.1| hybrid sensory histidine kinase BarA [Tolumonas auensis DSM 9187]
 gi|237501747|gb|ACQ94340.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 908

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 13/236 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT  L KT     L+  Q  Y+  I  S+  LL
Sbjct: 285 QEAARIKSEFLANMSHELRTPLNGVIGFTRQLFKTQ----LSLHQRDYLSTIEHSAKNLL 340

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +++NDILD + ++AG + L      + +++N+    +A   H+  + + ++    +   V
Sbjct: 341 SIINDILDFSKLEAGKLTLENIPFNIREMINDTVTLLAPSAHDKKLELSLLVSQPIPDLV 400

Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMC 735
           A D  RL QI + I+ NA+ F+ +G   I  +   + D       F +++ G  + ++  
Sbjct: 401 AGDPLRLQQIITNIVGNAIKFTEQGMVNIHVSTTPSIDQQKVLLRFRIRDTGIGMDDEQL 460

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F  F+       RR  G GLGL I +  I    G + + S     +     +P
Sbjct: 461 MRLFQPFIQGDSSISRRYGGTGLGLVISQKLIEQMDGSMQVHSEPNQGSEFTITMP 516


>gi|302871717|ref|YP_003840353.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574576|gb|ADL42367.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 576

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 126/236 (53%), Gaps = 15/236 (6%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K + +++ FV +VS+EL++PLT+I GF + LK    G+++ K    +++  I      
Sbjct: 339 LKKLERVRSDFVANVSHELKTPLTSIKGFVETLKD---GAIDDKDVALKFLNIIEVEVER 395

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---IKVISDGK 676
           L+ L+ND+L L+ ++   M +    +V+ +++ E  + +  K  + NI+   IKV    +
Sbjct: 396 LVRLINDLLYLSEIENAAMPILDEKVVVKEVVLESIELLKIKAEKKNIQFVDIKVPDGLE 455

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +  +   R  L QIF  ++ NA+ ++ +   V +   + NG  +  VK+ G  IPE   +
Sbjct: 456 MNIY---RDWLKQIFINLIDNAIVYNKENGKVWVTVEKSNGMVVIKVKDTGIGIPEKEIE 512

Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF     +G+ R   G GLGLSIV+  + L+GG + + S +   +     IP
Sbjct: 513 RIFERF-YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGYGSEFTVIIP 567


>gi|295094505|emb|CBK83596.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 624

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 13/243 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L    +   KA+  K  F+  +S+++R+P+  IIGFTDLL  +   S   K   Y
Sbjct: 231 KANHELENALDMANKANNAKTVFLNSMSHDIRTPMNAIIGFTDLLNDNL--SDQDKARDY 288

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I +SS  LL+L+N++L++A +++G  +L+ S+I L   L+ V     ++M E NI  
Sbjct: 289 IAKIRSSSDYLLSLINNVLEMARIESGKTELDESSISLKS-LDSVYWLFESQMKEKNIDF 347

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFIFS-V 723
               + K  + + D  ++ +I   I++NA  +S  G +V +K       RD    I + V
Sbjct: 348 TWNVNVKHNNILCDVVKIKEILMNIINNAYKYSLPGDSVAVKIDELPCDRDGYVRIRTVV 407

Query: 724 KNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            + G  + ED  + +F  F    ++   GQ  G GLG++IV+  ++L GG + + S    
Sbjct: 408 SDTGIGMSEDFLEHIFEDFSREQTSTESGQ-FGTGLGMAIVKKIVDLMGGDIDVQSEPGK 466

Query: 781 VTT 783
            TT
Sbjct: 467 GTT 469


>gi|255011940|ref|ZP_05284066.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313149776|ref|ZP_07811969.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138543|gb|EFR55903.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 736

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 21/245 (8%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           NVT + +  + L++  E   ++D++K++F+ ++S+E+R+PL  IIGF+ LL  +      
Sbjct: 295 NVTPTKKLLKELSDAKERAEESDKLKSAFLANISHEIRTPLNAIIGFSSLLMNT---DRK 351

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS----TIVLNDLLNEVKQSIA 659
            +  +Y + I++++ +LL LVND+LDL+ +++G + +  +     I   +L N ++  + 
Sbjct: 352 EEMDEYKQIITSNTDLLLRLVNDVLDLSKIESGTIDVKLAEFDLAIYFEELCNSIRPLVV 411

Query: 660 TKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                    +K++ D     F+   D  RL Q+     +NA+  + +G+  I    R  G
Sbjct: 412 RP------EVKLVCDNPYKRFMVLLDNNRLAQVMLNYATNAIKCTRQGT--IHVGYRCEG 463

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + I F V + G  I E     ++ RF       Q  G GLGL I +      GG V    
Sbjct: 464 EGIRFYVSDTGIGISEANKSRLYQRFEKLNEFAQ--GTGLGLVICKVVTEASGGQVGF-E 520

Query: 777 SDEGV 781
           S+EGV
Sbjct: 521 SEEGV 525


>gi|146312879|ref|YP_001177953.1| hybrid sensory histidine kinase BarA [Enterobacter sp. 638]
 gi|145319755|gb|ABP61902.1| Hpt sensor hybrid histidine kinase [Enterobacter sp. 638]
          Length = 918

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L   S+   LN  Q  ++  I  S+  LL 
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSE---LNPTQRDHLHTIERSANNLLA 343

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++ND+LD + ++AG + L      L   L+E+   +A   H+  + + + I +    + +
Sbjct: 344 IINDVLDFSKLEAGKLILESIPFPLRSTLDEIVTLLAHSSHDKGLELTLNIKNDVPDNVI 403

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSV--KNNGSSIPEDMCKS 737
            D  RL Q+ + ++ NA+ F+  G+  +L  K A  N      V  ++ G  IPE     
Sbjct: 404 GDPLRLQQVITNLVGNAIKFTENGNIDVLVEKRAISNNKLQIEVQIRDTGIGIPERDQSR 463

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 464 LFQAFRQADASISRRHGGTGLGLVITQKLLKEMGGDISFHS 504


>gi|326793449|ref|YP_004311269.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326544213|gb|ADZ89433.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 1148

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +RAL +  E   +A+E K+ ++  +S+ELR+PL +IIG+  LL   K     ++    ++
Sbjct: 668 DRALQDAKELAERANEAKSRYLTGISHELRTPLQSIIGYAQLLSDKK--DAPTQHQNGLD 725

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   L +L+  +LD++ ++AG   L  +T+ L +L+ +++     +     I  ++
Sbjct: 726 IIQRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPNLIEQLESMFEMQARGKGIEFEL 785

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                L   V  D +RL QI   +LSNA+ ++ KG  V       N    F + + G  I
Sbjct: 786 NIRAPLPRLVITDEKRLRQILINLLSNAVKYTQKGK-VTFDINYRNQVAEFHIVDTGVGI 844

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            E+  + +F+ F  V + +     G GLGL+IV+    + GG +   S
Sbjct: 845 KEEYLQRIFDPFERVRDRYSANLPGTGLGLTIVKLLTEIMGGDLKARS 892


>gi|315181473|gb|ADT88386.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii NCTC 11218]
          Length = 1203

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 127/255 (49%), Gaps = 8/255 (3%)

Query: 539 MLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +LT VN ++     ER L +     +KA   +  F+  +S+ELR+P+  ++G  ++LK  
Sbjct: 607 ILTVVNDISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEMLKIR 666

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +    N      +  + +S+  L  LVNDILD + ++A  ++L+     L   + E+ + 
Sbjct: 667 E---TNEDTRLILNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGELLRV 723

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             T   E ++   V  + G++ + + D  RL QI + +LSNA+ F+  G  V +      
Sbjct: 724 HCTAAREKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFTQSG-FVSVDIEVTE 782

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            D + ++ ++G  +  +  K+VF+ FV       RR  G GLGL+IV   + +  G ++I
Sbjct: 783 RDMVMNISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKGDITI 842

Query: 775 SSSDEGVTTINCRIP 789
            S     T+I   IP
Sbjct: 843 DSEQGKGTSIQVTIP 857


>gi|325961693|ref|YP_004239599.1| signal transduction histidine kinase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467780|gb|ADX71465.1| signal transduction histidine kinase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 547

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 11/233 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D+ K  F+  V++ELR+PLT+I+ + D+++      ++ +  Q ++ +  ++  L  L+ 
Sbjct: 308 DKAKTDFLATVNHELRTPLTSIMAYLDMIQERTEQPVSPEVHQMLDIVVRNTERLRILIE 367

Query: 626 DILDLAT--VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           D+L ++   +D  +M L  + + L   L+ V  ++       N+ I V    +    +AD
Sbjct: 368 DMLSVSRNGLDDSLMHL--TPVRLGQTLDLVAAALRPLATLQNVTIAVEPVPEDPEILAD 425

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDF-IFSVKNNGSSIPEDMCKSV 738
             +L Q+F+ ++SNA+ F+  G  + +     AA D   +   SV + G  I  D    V
Sbjct: 426 EVQLQQVFTNLVSNAIKFTPSGGRIEVGSESHAAADGTRWATVSVADTGIGISSDEIHHV 485

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF   SNA  G   G GLGL+I +  ++ HGG + +SS+    TT+   +P
Sbjct: 486 FTRFYRASNAMAGAIPGTGLGLAITKDIVSRHGGRIDVSSTLGSGTTVTVSLP 538


>gi|323526066|ref|YP_004228219.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323383068|gb|ADX55159.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 657

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER L  +  A + A+E    K+ F+  +S+ELR+PLT ++    +L+   +  L  +   
Sbjct: 271 ERLLASEQAARQTAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEM--IADLPDQARA 328

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  +  +   L++D+LDL  V  G ++L+  T+ ++++++ V +   +++      
Sbjct: 329 SVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQVKQQD 388

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V  D      +ADR RL Q+   ++ NA  F+  G  + ++   +      SV++ G 
Sbjct: 389 VHVHKDATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTRDERMHVQISVEDTGI 448

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I  +    +FN F     +  R+  G+GLGL+I ++  ++HGG V+  S
Sbjct: 449 GIEPEQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGTVTAQS 498


>gi|228927616|ref|ZP_04090668.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832096|gb|EEM77681.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 312

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     K    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQLQEANIDCRPFFPSKKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGNDGDYIDITAYESNNMIAIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 302


>gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 8/224 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  IIG   L   S+      +   Y+E I+ S+  LL L+NDIL
Sbjct: 414 KSEFLANMSHEIRTPMNAIIGLGQLALKSQPPP-PPRLYDYLEKITGSAATLLTLINDIL 472

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D + ++AG + ++     L+++LN++   +A +  E  + +    D  +    V D  RL
Sbjct: 473 DFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDPTVPRLLVGDPHRL 532

Query: 688 LQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+   + +NA+ F+  G   I    +    +      +V++ G  +  +  + +F  F 
Sbjct: 533 GQVLINLTANAIKFTETGEVTISFEVVDPTAEPLTLRVAVRDTGIGMSPEQIERIFQPFT 592

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
                  R+  G GLGLSI    + L GG + + S+    +T +
Sbjct: 593 QADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFS 636


>gi|294776755|ref|ZP_06742219.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294449410|gb|EFG17946.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1316

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 30/254 (11%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +K E + +A   +  F  ++S++ R+PL+ II   D L+   L      +  Y   ++ +
Sbjct: 770  DKKEQIHQA---QLRFFTNISHDFRTPLSLIIAALDKLRREGL------KEYYYRILNGN 820

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            +  LLNLVN+++D  TV+ G+MKL    + +N ++ E+         +  I  +VI D +
Sbjct: 821  AQRLLNLVNELMDFRTVENGMMKLELQPLDINHIVKEIANDFIDYAEQRKIDFQVICDTE 880

Query: 677  LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN--------- 726
            L  +  ADR  + +I   +L+NA  ++     ++L+       F    KNN         
Sbjct: 881  LPVTIYADRNIVEKIVMNLLNNAFKYTPDNGKILLETRGRKDCFTSEYKNNFIVGECVDD 940

Query: 727  ---------GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                     G  +  D   SVF+RF  V+  +     G G+GL++V+S + LH G +SI 
Sbjct: 941  TFFILVSDTGVGVSHDSISSVFDRFYKVNTVNTDSHLGTGIGLALVKSLVLLHKGSISIF 1000

Query: 776  SSDEGVTTINCRIP 789
            S     T +  R+P
Sbjct: 1001 SERGRGTDMVVRLP 1014


>gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 956

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 124/241 (51%), Gaps = 10/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T S  A +A+   ++   +A+  K+SF+ ++S+E+R+P+  I+G + L++ ++   LN
Sbjct: 201 DITPSYEARQAIEHAHQQAEEANRAKSSFLANMSHEIRTPMNAIMGMSYLVQKTE---LN 257

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+  I +SS  LL ++NDILD + ++AG + + +    L+ +L+ +   +  K  
Sbjct: 258 ERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGKLGIEHIEFELDKVLDNLAGLVGDKAA 317

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI- 720
              + +    D ++    V D  RL QI     +NA+ F+ +G   I ++   ++   + 
Sbjct: 318 SKGLELVFDVDKQVPLQLVGDPLRLGQILVNYANNAVKFTERGEIDIRVRVQEESTSHVV 377

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F+V++ G  I E+    +F  F        R+  G GLGL+I      +  G V + S
Sbjct: 378 LHFAVRDTGIGISEEQKSVLFQSFQQADASTTRKFGGTGLGLAISRQLAQMMEGEVGVDS 437

Query: 777 S 777
           +
Sbjct: 438 T 438


>gi|288942026|ref|YP_003444266.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897398|gb|ADC63234.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 556

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 129/254 (50%), Gaps = 21/254 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +   A  +A+  K++F+ ++ +ELR+P+  +IG ++LL      ++   Q  Y+  I 
Sbjct: 196 LIQAKLAAEQANVAKSAFLANMGHELRTPMNALIGLSNLLLDGS-EAMTPHQRDYLLKIH 254

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L +L+NDILD + V++G ++L  + + L+++L+  +Q       E  +    +  
Sbjct: 255 DSAAALSSLLNDILDYSKVESGYLRLESTPLNLDNILDRTRQLYMPCAEEKGLAFSCVRA 314

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN-------GDFI--- 720
            ++   +A D  R+ Q+   ++ NA++F+ +GS    V+L AA          G+ +   
Sbjct: 315 PEVPPVLAGDPLRIQQVLDHLVDNAIEFTERGSVRVGVVLVAAPARVASKTAAGERLVLR 374

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS- 777
           FS+++ G  +  + C+++F  F        R   G GLGLS+ +  + L  G + + S  
Sbjct: 375 FSIEDTGIGLTPEQCQALFAPFQQADMSASRVHGGTGLGLSLCQRLVELMSGEIGVESRL 434

Query: 778 DEGVT---TINCRI 788
            EG T   T+  R+
Sbjct: 435 GEGSTFWFTVPLRL 448


>gi|229825439|ref|ZP_04451508.1| hypothetical protein GCWU000182_00798 [Abiotrophia defectiva ATCC
           49176]
 gi|229790002|gb|EEP26116.1| hypothetical protein GCWU000182_00798 [Abiotrophia defectiva ATCC
           49176]
          Length = 494

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 163/372 (43%), Gaps = 48/372 (12%)

Query: 445 EGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHI-RNIAATCSRYYNESDGWDLFAA 502
           E + VFG DGR I  SN A  SL   ++  +    +I  NI    +      +  D++  
Sbjct: 22  ELIFVFGEDGRYINCSNKARESLGYLQDEDMGKFENIFPNILLEETSLLEHVEA-DVYRK 80

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             T F  + K                 II   + + ++  ++ T++    R L    E L
Sbjct: 81  NETCFPADVK-----------------IIRFEDDKFIVFAIDQTETRNMARELKACKEEL 123

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +   + K  FV ++++ELR+P+  I G T +LL T     L+S Q + V  I      + 
Sbjct: 124 KSELKYKTEFVSNITHELRTPVNGIQGMTKNLLNT----ELDSFQLETVGIIEQCCVNMS 179

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + +++  + L        + LN+V     T ++E  +++ V + D      
Sbjct: 180 KIINDLLDFSKMESDKLVLENKAFSFREFLNKVMAFNVTLVNEKGLKLLVHVGDDIPKYL 239

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFI---FSVKNNGSSIPEDMCK 736
           + D  RL QIF+ ++SNA+ F++ G   +  +  R+  DF+   F V + G  I ++   
Sbjct: 240 IGDELRLTQIFNNLISNAVKFTTIGHVAVEASLIREEDDFVELFFMVVDTGIGIAKENMD 299

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS----------------SD 778
            +F +F        RR  G GLGLSI +  + L GG + + S                +D
Sbjct: 300 KLFKKFSQVDASTTRRFGGTGLGLSISKKLVELMGGDIKVESEVGKGSSFSFNVILKKAD 359

Query: 779 EGVTTINCRIPS 790
           E   T    +PS
Sbjct: 360 EAEETTGVELPS 371


>gi|225862322|ref|YP_002747700.1| putative sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225786427|gb|ACO26644.1| putative sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 337

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 535 NAQTML------TFVNVTDSVRAERALTEKNE-ALRKADEIKNSFVQHVSYELRSPLTNI 587
           N QT L      +F N+  S+    A  EK     ++++E +   +  +S+++R+PLT+I
Sbjct: 68  NLQTRLFTSNDQSFHNIVFSINELIAELEKVRIKAKRSEESRKQLLSSISHDIRTPLTSI 127

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG+ D LK     S   KQ +Y++ +   S  L +LV++I ++A +DA    L    +  
Sbjct: 128 IGYIDALKDGVATSEIEKQ-EYLKILYMKSNNLKHLVDEIFNMAKLDANEFPLKEEKLDF 186

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++  EV      ++ ++NI+++V+        +AD   L++I   ++ NA+ +   G  
Sbjct: 187 SEVTREVLIEFLPEISKHNIKLQVLMPESTCPIIADHLSLMRIIGNLMKNAIYYGKDGKI 246

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFI 765
           + ++    +  +   + + G  IP+   ++VF R      +      G GLGLSI ++ +
Sbjct: 247 IGVELLETDAAYELLIWDKGPGIPKHDLQNVFERMYRSEQSRNSSFGGSGLGLSISKALV 306

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             +GGH+ + S     TT    IP
Sbjct: 307 ERNGGHIWVESIPWERTTFGFSIP 330


>gi|157691147|ref|YP_001485609.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157679905|gb|ABV61049.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 475

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 119/243 (48%), Gaps = 17/243 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E + + ++ +  F+  VS+EL++PLT I G  + L T+ + +   K+  Y   I+
Sbjct: 236 LQRSREEIDRLEKRRRQFIADVSHELKTPLTTIRGLVEWLNTADVPA-EEKEKCYA-LIT 293

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVI 672
             +  +L LVN+ +D   + +  + L      L D    +K+ +     E  N + ++V 
Sbjct: 294 DETKRMLRLVNENMDYEKIRSNQITLQKFHYPLIDTFEVIKEQLNRMAEEKNNQLIVEVN 353

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D K+    AD  RL+QI   I  NA+ F+ +G  ++L+   ++G+ I  V++ G  I  
Sbjct: 354 PDQKV---YADYDRLIQILVNITKNAIQFT-EGGRIVLRGKEEDGETIIEVEDTGVGIAP 409

Query: 733 DMCKSVFNRFV------SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           +  K ++ RF       +    G+    GLGLSIV+  ++LH G + + S     TT   
Sbjct: 410 EEVKHIWERFYKADISRTTTPYGE---YGLGLSIVKQLVDLHEGQIDLKSEKYKGTTFTI 466

Query: 787 RIP 789
           R+P
Sbjct: 467 RLP 469


>gi|114800173|ref|YP_759993.1| sensory box sensor histidine kinase/response regulator [Hyphomonas
           neptunium ATCC 15444]
 gi|114740347|gb|ABI78472.1| sensory box sensor histidine kinase/response regulator [Hyphomonas
           neptunium ATCC 15444]
          Length = 655

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 14/248 (5%)

Query: 540 LTFVNVTDSVRAERALT-EKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           + F+     VR ER    E  +AL +A++   +K+ F+ ++S+E+R+PL  ++G   +L 
Sbjct: 237 MVFITYIRDVREERRKAHELRDALNRAEQATRLKSEFLANMSHEIRTPLNGVLGMAQVLA 296

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G L   Q++ V  I  S   L+ L+NDILDL+ ++AG M L+     L   L+ + 
Sbjct: 297 H---GKLTEAQAEQVGVILDSGNTLMVLLNDILDLSKIEAGRMDLSPVPGDLRHKLSGLF 353

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      +E  I I++  D  + S  + D  R+ Q  S +LSNA+ F+S+G  +++  + 
Sbjct: 354 KLHEAAANEKGIGIRLFVDPSVPSRLLFDPVRVRQCVSNLLSNAIKFTSQGEVMLVVTSE 413

Query: 715 --DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
              +G    I  V + G  I  D    +F  F        R+  G GLGLSI      + 
Sbjct: 414 PVQSGAHRVIMHVSDTGVGIAADKVDRIFESFAQEDGSTTRKFGGTGLGLSITRRLARMM 473

Query: 769 GGHVSISS 776
           GG V+  S
Sbjct: 474 GGDVTAVS 481


>gi|91975367|ref|YP_568026.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91681823|gb|ABE38125.1| histidine kinase [Rhodopseudomonas palustris BisB5]
          Length = 451

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 9/238 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +E++  FV + S+ELR+PL  + GF D L+        +++ +++  + A +T + 
Sbjct: 208 LRRVEEMRVDFVANASHELRTPLAALSGFIDTLQGPARDDAKARE-RFLGIMQAQATRMA 266

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+L L+ V+  +     + I L  L+ +V   +     E  + I++          
Sbjct: 267 RLIDDLLSLSRVELSVHVRPDTQIDLAPLIKQVADGLEPLAKERQVAIEIELPEAPAVIA 326

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNG-DFIFSVKNNGSSIPEDMCK 736
            DR+ LL++F  ++ NA+ + + G  V +      + D G ++  +V++ G  I  +   
Sbjct: 327 GDREELLRVFENLIENALKYGASGGRVAVSVGSVPSSDGGVEYRVAVRDFGPGISPEHLP 386

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPSK 791
            +  RF  V       + G GLGLS+V+  +N H G + I S    G T   C  P K
Sbjct: 387 RLTERFYRVDVGDSRSQGGTGLGLSLVKHIVNRHRGRLLIESVMKNGATFTVCFPPEK 444


>gi|323693597|ref|ZP_08107798.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323502334|gb|EGB18195.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 360

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 128/241 (53%), Gaps = 6/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L E+ +  ++A++ KN  V ++++++++PLT++IG+  LL  +     + ++++Y+ 
Sbjct: 110 KRTLAERADKAKRAEQQKNDLVVYLAHDIKTPLTSVIGYLSLLDETP-DMPDEEKAKYIH 168

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                +  L  LVN+  ++    +  + L  + + L  ++ ++   +  +++     I+ 
Sbjct: 169 TAWEKANRLRTLVNEFFEITRSHSEALPLQKTKVDLYYMIAQISDELYPQLNACGKIIEN 228

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  + S   D  +L ++F+ IL NA+ +S + S VI  +AR+  ++      N   IP
Sbjct: 229 HVDEDI-SVYGDSDKLARVFNNILKNAISYSEENS-VIKVSARELSEWTVIQFENDGEIP 286

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED    +F++F  + NA   +  G GLGL+I ++ I LHGG +   SS+ G T     IP
Sbjct: 287 EDKLNVIFDKFCRLCNARLSETGGSGLGLAIAKNIIVLHGGQIRAESSN-GRTAFIIEIP 345

Query: 790 S 790
           S
Sbjct: 346 S 346


>gi|281490938|ref|YP_003352918.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374696|gb|ADA64216.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 480

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 132/249 (53%), Gaps = 22/249 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEY 612
           +TE+++A R+    +  FV +VS+ELR+PLT++  + + L+    G++  K+  S ++  
Sbjct: 218 MTEQDKAERE----RRLFVSNVSHELRTPLTSVKAYLEALED---GAIEDKETASSFINV 270

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHE---- 664
               +  ++ +++D+L L+ +D   + LN   I     L+  +N + Q + T+ ++    
Sbjct: 271 SLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISS 330

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           N   ++  S+  +   + D  ++ Q+   I+ NA+ +S KG T+ +   +   D + S+ 
Sbjct: 331 NFTLVRKYSEQPIWVEI-DTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISIS 389

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IP+     +F+RF  V NA R  +  G GLGLSIV   + +HGG +  SS  EG 
Sbjct: 390 DQGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGK 449

Query: 782 -TTINCRIP 789
            TT +  +P
Sbjct: 450 GTTFSFTLP 458


>gi|239907500|ref|YP_002954241.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797366|dbj|BAH76355.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1133

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 160/362 (44%), Gaps = 29/362 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           T+Y  L       +D + +G  V   D R+  SNPAF+ +     + L   T+ R+I   
Sbjct: 487 TRYKLL-------LDSMGDGFVVLSSDYRLVESNPAFQEMTGYGPDELEKMTY-RDITPE 538

Query: 487 C-----SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                  R   E D           F+ E +   G++  ++     +   P  + +    
Sbjct: 539 AWHKPEERLLAEVDA----KGSAEVFEKEYRRKDGSILPVAVRPHRHPESPGEDRRYFAV 594

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++ D    E  L +  EA   A+  K+ F+  +S+E+R+PL  +IG T+L     LG+
Sbjct: 595 VRDIADVKAIEADLRQAKEAAETANRAKSDFLAKMSHEIRTPLHAVIGMTEL----TLGT 650

Query: 602 -LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q   +E    ++  LL ++ND+LDL+ ++A  ++L      L   L  V +++  
Sbjct: 651 ELSPQQRDALETAREAAGNLLGIINDVLDLSRIEAKGLELVIQDFDLRRTLAGVARTLRP 710

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--G 717
           +     + + + ++         D+ R+ QI   ++ NA+ F+ +G   +  AA D   G
Sbjct: 711 QAARKGLFLTLAVAPNTPRHVRGDQGRVRQILLNLVGNAVKFTREGGVTVTVAAPDGDPG 770

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSI 774
               +V + G  I  D  + +F+ F + A R       G GLGL+I    +   GG +++
Sbjct: 771 QLELAVADTGIGIAPDRLERIFDMF-TQADRTVALNFGGTGLGLAICRELVRSMGGEIAV 829

Query: 775 SS 776
            S
Sbjct: 830 DS 831


>gi|212693237|ref|ZP_03301365.1| hypothetical protein BACDOR_02748 [Bacteroides dorei DSM 17855]
 gi|237709983|ref|ZP_04540464.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|237725353|ref|ZP_04555834.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|265753634|ref|ZP_06088989.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|212664188|gb|EEB24760.1| hypothetical protein BACDOR_02748 [Bacteroides dorei DSM 17855]
 gi|229436040|gb|EEO46117.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|229456076|gb|EEO61797.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|263235348|gb|EEZ20872.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 489

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 117/217 (53%), Gaps = 3/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++G+LN +Q      I  +S  LL
Sbjct: 260 FKELDSAKTTFISTISHELKTPISAIMMSLQLLEDQRIGALNEEQEDLANSIKENSERLL 319

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N+  ++L++  V++G ++L        +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 320 NITGELLNMTQVESGKLQLKPKITKPIELIEYAIKANRVQAEKFNIQIEVEYPEDKIGKL 379

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   V++ A + +  FI   V++ G  I     KS+F
Sbjct: 380 FVDSEKIAWVLTNLLSNAIRYSPENGRVVIGARQTDDGFIEMFVRDFGKGIDPRYHKSIF 439

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +       + +G GLGLSI   F+  H G +++ S
Sbjct: 440 DHYF-RVPGTKVQGSGLGLSISRDFVEAHNGTLTVDS 475


>gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 1245

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 123/245 (50%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E  + E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 706 THKDITRHKSNEVVMLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 762

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  +Q  Y++    S+  LL ++NDILD + ++AG ++L   +  L+ +L+      A 
Sbjct: 763 SLTPQQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVSFPLDKVLDHALDLNAL 822

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 823 KAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIEL--GCEDVGER 880

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I ++  +S+F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 881 DHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGT 940

Query: 772 VSISS 776
           + + S
Sbjct: 941 MQVQS 945


>gi|94500324|ref|ZP_01306857.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94427623|gb|EAT12600.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 896

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 138/268 (51%), Gaps = 23/268 (8%)

Query: 522 SDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +D+++EY +    NA  ++ T  +++   + E+AL +   A   A  +K  F+  +S+E+
Sbjct: 316 ADAIIEYDVDG--NATAIVGTNQDISAQQQQEQALIDARMAAEHAARVKGDFLASMSHEI 373

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  I+G  +LLK ++L +L   Q+Q V    +SS  LL L+NDILD + ++A  + L
Sbjct: 374 RTPMNGIMGMLELLKNTELTTL---QAQRVNIALSSSKSLLVLINDILDFSKIEADRLIL 430

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIR-----IKVISDGKLGSFVADRQRLLQIFSKIL 695
                 L  LL E+ ++++      NI      ++V  D   G    D  R+ QI + ++
Sbjct: 431 EEIDFNLRSLLGELTEALSQLAESKNIELVLDTVEVHQDMVKG----DPSRIRQIITNLI 486

Query: 696 SNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           SNA+ F+ +G  +I  + +    D     FSVK++G  I +   K +F+ F S A     
Sbjct: 487 SNAIKFTHQGEVLIRVSLQEYSLDQWQVNFSVKDSGIGITQGQQKKLFDAF-SQADSSTT 545

Query: 752 R---GVGLGLSIVESFINLHGGHVSISS 776
           R   G GLGL+IV+       G + + S
Sbjct: 546 REYGGTGLGLAIVKKLCEAMDGQIRVKS 573


>gi|325124545|gb|ADY84068.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 935

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +LN++Q+ Y++ I  SS  LL L+
Sbjct: 286 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNLYLQTIRKSSAHLLALI 343

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 344 NDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGD 403

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 404 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 462

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 509


>gi|313680469|ref|YP_004058208.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
 gi|313153184|gb|ADR37035.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
          Length = 478

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 124/269 (46%), Gaps = 17/269 (6%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHV 576
           LE ++    E SI      +T L      D V A  RAL    E L  A + ++ F+   
Sbjct: 207 LEAIAQKAEEVSI----KGRTRLPEPETHDEVSALARALNRMLERLEHAFQTQSRFLADA 262

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+P+T I+G    L   +   +N  Q + +E I      +  LV D+L+LA  + G
Sbjct: 263 SHELRTPITAILGHVGYLL--RRTPVNEVQRESLETIRREGERMTKLVTDLLELAGSEGG 320

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +     + L  LL E+    A    E  I ++   +  +     D +RL Q+F+ +++
Sbjct: 321 -WRFEVRPVELRGLLQEIASEYAPTF-EGEIVLEAPDEVWVE---GDDERLHQVFANLIA 375

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           NA+   +  + + L+  R  G  I  V +NG  IP +    +F RF  V  A      G 
Sbjct: 376 NAV--KAGATRITLRVRRPPGRVIVQVSDNGPGIPPEHLPHLFERFYRVDKARDRAAGGS 433

Query: 755 GLGLSIVESFINLHGGHVSISSS-DEGVT 782
           GLGL+IV++ +   GG V + S   EG T
Sbjct: 434 GLGLAIVKAIVEALGGEVWVESQVGEGTT 462


>gi|295398638|ref|ZP_06808663.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
 gi|294973126|gb|EFG48928.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
          Length = 631

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 123/238 (51%), Gaps = 12/238 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILL 621
           K +  +  FV ++S+ELR+PLT++  +++ L     G++  ++   +++  I   +  ++
Sbjct: 380 KIERDRKQFVSNISHELRTPLTSVRSYSEALVD---GAIKDEKVAVEFLNVIQTETDRMI 436

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGS 679
            +++D+L L+ +DA    +N   I+  DL+N +       +   +   K  +I    +  
Sbjct: 437 RMISDLLHLSRMDAKQQVINRELIIFKDLVNHILDRFNMMLQSEDYEGKNYIIKRELMEE 496

Query: 680 FV---ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            V    D+ +L+Q+   I++NA+ +S  G T+ ++    +   + S+++ G  IP++   
Sbjct: 497 EVWVEIDQDKLIQVIDNIMNNAIKYSPDGGTIYVRLMSTHNQLVLSIQDQGLGIPQESIP 556

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F+RF  V  A    + G GLGLSI +  I LH G + ++S +   TT    +P +E
Sbjct: 557 HLFDRFYRVDKARSRAQGGSGLGLSIAKEEIELHNGKIWVNSIENKGTTFFISLPFEE 614


>gi|172065677|ref|YP_001816389.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997919|gb|ACB68836.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 528

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 5/221 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +++ELR+ L  +     +L+T  L       +Q  + +      L  LV+D+LD+ 
Sbjct: 161 FIAMLAHELRNHLAPLRHSVSVLQT--LPDPAPMLAQCRDAVHRQVGQLTRLVDDLLDVG 218

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            + AG ++L+ + + + D++    +SI  K+      ++V    +      D  RL+Q+ 
Sbjct: 219 RITAGKVELDNAPVTVRDVVCRGVESIQPKLAARQQHLRVELPPEPVVVRGDAARLVQVL 278

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             +L NA  FS  G+ + + AAR+       V ++G  I     +++F+ F  +   G+R
Sbjct: 279 HNLLDNASKFSPPGARIDVAAAREGATVAIRVTDHGVGIAAGSLETIFDLFDQDGVPGRR 338

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
              G GLGL+I  SFI LHGG +S  S   G   T   R+P
Sbjct: 339 PSDGFGLGLAICRSFIELHGGRISAESEGPGHGATFTVRLP 379


>gi|156743247|ref|YP_001433376.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156234575|gb|ABU59358.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 1003

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 126/259 (48%), Gaps = 14/259 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSL 602
           N+T+  + E AL    +   +A   K+ F+ ++S+ELR+PLT IIG+ DL+   ++ G  
Sbjct: 460 NITERKQTEEALRNARDWAEEASRAKSRFLANMSHELRTPLTTIIGYADLITLATQQGEF 519

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N  +       +A    LL ++ND+LDL+ ++AG M+++ +   +  L  EV  S+    
Sbjct: 520 NRIRDDITRVRNAGKH-LLAIINDLLDLSKIEAGRMEIHIAPFSVPALAEEVVASMDLLA 578

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARD----- 715
                 + +  D  +G   +D  R+ Q+   ++ NA  F+  G  +  I ++A +     
Sbjct: 579 QTRRNTLILTIDPTVGVMHSDDVRVRQVLYNLVHNACKFTEDGVVTVTIARSALESTVHV 638

Query: 716 NGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           NG     +F++ + G  + +D    +F  F        R+  G GLGL++    + + GG
Sbjct: 639 NGHSARIVFTISDTGIGMTDDQMARLFQEFTQADPTTMRKYGGTGLGLALSRHLVRMLGG 698

Query: 771 HVSISSSDEGVTTINCRIP 789
            ++++S     TT    +P
Sbjct: 699 DITVTSKPGVGTTFVVTLP 717


>gi|89893822|ref|YP_517309.1| hypothetical protein DSY1076 [Desulfitobacterium hafniense Y51]
 gi|89333270|dbj|BAE82865.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 536

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 129/276 (46%), Gaps = 22/276 (7%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           DE  SL  TL  LSD  L+ SI  L  A                  L E  E  +K D +
Sbjct: 261 DELGSLSTTLNFLSDK-LDSSISELKAAN---------------EKLKEDIEREKKLDLM 304

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN F+  VS+EL++P++ I  + + +K +   +  +K+  Y   I   S  + +LV D+L
Sbjct: 305 KNEFIAGVSHELKTPISLISSYAEGIKDNI--THGAKREYYAHIIMDESKKMASLVEDML 362

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ +++G  KL      L  LLN + +  A  +      + +          AD  R+ 
Sbjct: 363 DLSQLESGSFKLKVEDFSLTGLLNSISERYAGDLRRKGKNLDLSIPAYDLEVSADMFRIE 422

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSN 745
           Q+ + ++ N + +S +G  + +K A D GD +   V+N G  IPE     ++++F  +  
Sbjct: 423 QVLTNLIDNGIKYSLEGGIIKIK-AHDQGDTVTIEVENPGEPIPEAELPHIWSKFYRIEK 481

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +   +  G GLGLSIV   ++ HG      ++  GV
Sbjct: 482 SRNKELGGTGLGLSIVREILDRHGSAYGAENTVSGV 517


>gi|152974826|ref|YP_001374343.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023578|gb|ABS21348.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 459

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 117/241 (48%), Gaps = 6/241 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  RA  +   +L   D  +  F+ +VS+ELR+PL+ I G+++ +     G    KQ ++
Sbjct: 220 RLGRAFNKMATSLENEDIKRKEFLANVSHELRTPLSYIKGYSEAILD---GVAKGKQEKF 276

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I   +  +  LV+D+LDLA ++     L    IV   L+ +V ++   K  E  + I
Sbjct: 277 MQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLQKQPIVFAQLIEDVVETYEWKCIEKQVEI 336

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +  D  +   + D  R+ Q+   IL NA+ ++++   + ++  +   D    + + G  
Sbjct: 337 SMELDPDIIVMI-DEDRMQQVLHNILDNAIRYTNEKGKITVQLQKLKKDCQLKIMDTGIG 395

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +  RF  V  A   Q  G GLGL+IV+  +++H G   I S     TT+  +
Sbjct: 396 IEREHVEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHDGKWKIESEKGKGTTVMIQ 455

Query: 788 I 788
           +
Sbjct: 456 L 456


>gi|115359898|ref|YP_777036.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285186|gb|ABI90702.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 1002

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 129/256 (50%), Gaps = 15/256 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T   + E  L E  EA   A++ K++F+  +S+E+R+PL  I+G  +L++ + 
Sbjct: 491 LCTLTDITARKQMEDKLREAREAADDANKAKSTFLATMSHEIRTPLNAIVGNLELMERAP 550

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L +++ + ++ + +SS  LL ++ND+LDL+ V++  M L      L  ++ +V    
Sbjct: 551 ---LPAEERRRLQTVMSSSDALLRVINDVLDLSKVESNQMVLEAVPFDLRAVVRDVAAIF 607

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                  ++ ++   D +L   +V D  RL QI S ++SNA+ F+ +GS  I   AR  G
Sbjct: 608 HPLAAARHLALECRIDPQLADGYVGDPTRLRQIVSNLVSNAIKFTERGSVTI--EARPTG 665

Query: 718 DFIFS------VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
               +      V++ G  I  +   ++F+ +V       RR  G GLGL +      L  
Sbjct: 666 TVGQARGVEVVVRDTGIGIAPESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMH 725

Query: 770 GHVSISS-SDEGVTTI 784
           G +++ S   +G T I
Sbjct: 726 GDLAVESRPGQGATFI 741


>gi|299771551|ref|YP_003733577.1| Sensor protein gacS [Acinetobacter sp. DR1]
 gi|298701639|gb|ADI92204.1| Sensor protein gacS [Acinetobacter sp. DR1]
          Length = 935

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +LN++Q+ Y++ I  SS  LL L+
Sbjct: 286 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNLYLQTIRKSSAHLLALI 343

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 344 NDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNIPQEVIGD 403

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 404 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 462

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 509


>gi|307725862|ref|YP_003909075.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           sp. CCGE1003]
 gi|307586387|gb|ADN59784.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           sp. CCGE1003]
          Length = 558

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 10/242 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E+   E++E L  A    + FV  VS+ELRSPL+ II +T LL+ +   S  + ++  V
Sbjct: 321 SEKRAREQSERLATA---MDHFVTTVSHELRSPLSAIISWTHLLERASEPSQVAPRAASV 377

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             IS ++  L ++V+D+LD   +  G + +N S + L  L   V + +   +    +R+ 
Sbjct: 378 --ISRNARQLAHMVDDLLDSGAIVTGKLSVNLSPVDLGALAGNVAEDMRIDVEAKGLRL- 434

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +  D    + +AD  R+ Q+   +LSNA  F + GS  +   A D      +V++ G  +
Sbjct: 435 IADDLASVTVLADESRMKQVVWNLLSNARKFCTTGSIELWVKA-DTEHVELAVRDTGVGL 493

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCR 787
            +   + +F RF      G  R  G+GLGL +V++ ++LH G +   S+  G   T   R
Sbjct: 494 DDQSLERIFERFQQFTAHGSGRVAGLGLGLWLVKNLVDLHNGTIVAESAGLGHGATFRVR 553

Query: 788 IP 789
           +P
Sbjct: 554 LP 555


>gi|288942103|ref|YP_003444343.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897475|gb|ADC63311.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 873

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 121/241 (50%), Gaps = 10/241 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+   +E A+ +  E    A+  K+ F+ ++S+E+R+PL  IIG   LL  S    L
Sbjct: 250 LDLTERKASEEAMRQAMETAEVANRAKSEFLANMSHEIRTPLNAIIGLGQLLLDS---GL 306

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +S+Q  Y+  I   S  LL ++ND+LD + ++AG ++L+     +  +L+++    +   
Sbjct: 307 DSRQRDYMNKIRQGSDALLRILNDVLDYSKIEAGQIQLDTVDFRIEAVLDQLTALFSLAA 366

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR-DNG-- 717
               + +    D +    +  D  RL Q+ + ++ NA+ F+ +G   + ++A R D G  
Sbjct: 367 ESKGLALYYHLDPRTPQVLRGDPMRLGQVLNNLVGNAVKFTERGFVELRIRALREDQGQI 426

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              FSV++ G  + +   + +F  F        RR  G GLGLSI      L GG + + 
Sbjct: 427 QLAFSVRDTGIGMDQASIEHLFQSFTQADCSITRRYGGTGLGLSISRQLAQLMGGDIRVR 486

Query: 776 S 776
           S
Sbjct: 487 S 487


>gi|229004319|ref|ZP_04162118.1| hypothetical protein bmyco0002_12830 [Bacillus mycoides Rock1-4]
 gi|228756932|gb|EEM06178.1| hypothetical protein bmyco0002_12830 [Bacillus mycoides Rock1-4]
          Length = 282

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 130/246 (52%), Gaps = 13/246 (5%)

Query: 543 VNVTDSVR----AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           VN+ D +     A   L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K   
Sbjct: 30  VNLKDRIDRLNIANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK--- 86

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              ++   + Y + I   +  +  L+ ++L+LA +++G  KL  +T  L +L+ +V   +
Sbjct: 87  -DGVSKDNTYYTDVILEETENMNRLIVEMLELAKLESGTYKLEMNTFSLGELVQQVYTKL 145

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              M E  +++++  D     +V A+R R+ Q+   +LSNA+ ++  G  + ++   +  
Sbjct: 146 LFSMEEKQLQVEI--DANPSIYVEANRNRIEQVVVNLLSNAIRYTPDGKEIRIRVIENEE 203

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
                ++N G+ IPE+  + +++RF   +A R +   G GLGLSIV++ + LH     + 
Sbjct: 204 KVKVEIENTGNPIPEESLQKIWDRFYRLDASRSRHTGGTGLGLSIVKNILELHHAKYGVY 263

Query: 776 SSDEGV 781
           ++++ V
Sbjct: 264 NTNDSV 269


>gi|254414213|ref|ZP_05027980.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178888|gb|EDX73885.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 531

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 1/245 (0%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + +  R+E  + +  E  ++  E+K+  +  +S+E R+PLT I   ++LLK         
Sbjct: 285 IIERQRSETMIRQALEKEKELGELKSHIITTISHEFRTPLTTIQSSSELLKLYDKKLTED 344

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K+ ++ + I      +  L+ND++ +   +AG MK N  ++ + DL +++ +   + +  
Sbjct: 345 KKLKHFQKIGLCVEHITQLLNDVILIGQSEAGQMKFNPISLEVADLCHDLIEEFQSNLDP 404

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
                  I++  +     D   L +  + +LSNA+ +S KG T+  +    +      ++
Sbjct: 405 RYTLKVFIAESPIKGLF-DEAMLRKSLNHLLSNAVKYSPKGGTITFQLGCHSDKVTVQIQ 463

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP      +F  F   ++     G GLGL+IV+ +++LHGG + I S     TT+
Sbjct: 464 DEGIGIPSIDQSRLFESFYRGSNISTIGGTGLGLAIVKKYVDLHGGQIQIESEVGIGTTV 523

Query: 785 NCRIP 789
              +P
Sbjct: 524 TVTLP 528


>gi|170738932|ref|YP_001767587.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168193206|gb|ACA15153.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 1113

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ +V  +S+ELR+PL  ++G+  LL+     ++  ++   +  I  S+  L  L++ +L
Sbjct: 671 KSRYVVGISHELRTPLNAVLGYAQLLENDP--AIPPQRQSGIRVIRRSAEHLSGLIDGLL 728

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687
           D++ ++AG ++L+ + + L D L+++      +     +  +      L + VA D +RL
Sbjct: 729 DISRMEAGRLQLHRNAVRLPDFLDQIVDMCRPQAEAAGLEFRFTRPAILPALVATDEKRL 788

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   ++SNA+ F+++G  V L     N    F+V + GS IPE     +F  FV    
Sbjct: 789 RQILLNLISNAIKFTARGH-VGLDLTYRNQIAEFAVTDTGSGIPEADLPRIFEPFVRGTL 847

Query: 748 RG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  G GLGL+I      + GG ++++S+    +T   R+
Sbjct: 848 PAATSTPGTGLGLTIAHLLAQVMGGEITVASALGRGSTFRLRL 890


>gi|299138268|ref|ZP_07031447.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX8]
 gi|298599514|gb|EFI55673.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX8]
          Length = 481

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 552 ERALTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQ 606
           ERA   K E +    + +++++++ +  +++ +++PLT I I    L   S++G L   Q
Sbjct: 234 ERARALKAEVVAESEKLSEQLRSAVLDGLAHAVKTPLTTIAISSAGL---SEIGGLTPVQ 290

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I   ++ L +L N +L  + +D G M+L    + L  LL    + + ++     
Sbjct: 291 IELVDLIEGQASRLSSLTNKLLRTSRLDVGEMRLQRKPLELRALLQATIEELGSEFDTER 350

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +      +G   +   DR+ L    ++IL NA+ +S   S + L A  D G  I S+ N+
Sbjct: 351 LHTH-FEEGL--AIEGDRELLSMALAQILENALKYSPAASAIELSAKADGGSVILSIHND 407

Query: 727 GSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           GS IP +    +F RF  +    HR    G G+GLS+    +  HGG + + S  +  TT
Sbjct: 408 GSYIPVEERALIFRRFYRSQDVEHRAP--GTGIGLSVALRAVEAHGGELWVESERDTGTT 465

Query: 784 INCRIPSK 791
            +  +P+K
Sbjct: 466 FSISLPAK 473


>gi|298249186|ref|ZP_06972990.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547190|gb|EFH81057.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 845

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 113/235 (48%), Gaps = 5/235 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+ELR+PL  +     L++       + + +  +  +     
Sbjct: 611 NSARKELEQRKDDFISMASHELRNPLAALKMQIQLVRKRLERQSHHEAATALSRVEGPVK 670

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      
Sbjct: 671 QLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTMQQLSTTHTI---VVRGAAPR 727

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             V D+ RL Q+F+ +LSNA+ +S    TV +  +         V ++G  IP +    +
Sbjct: 728 VLVGDKDRLGQVFTNLLSNAIKYSPGAETVEMDLSASEETVTVRVHDHGLGIPREQRDKI 787

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF   A   Q+   G+G+GL IV   +  HGG +++ S+    +T    +P K
Sbjct: 788 FERFYRVAGPKQKAIPGLGMGLYIVAEIVKHHGGTLTVDSAVGKGSTFTVTLPCK 842


>gi|206968070|ref|ZP_03229026.1| sensor protein VanS [Bacillus cereus AH1134]
 gi|229177366|ref|ZP_04304749.1| hypothetical protein bcere0005_7370 [Bacillus cereus 172560W]
 gi|206736990|gb|EDZ54137.1| sensor protein VanS [Bacillus cereus AH1134]
 gi|228606089|gb|EEK63527.1| hypothetical protein bcere0005_7370 [Bacillus cereus 172560W]
          Length = 350

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 137/254 (53%), Gaps = 11/254 (4%)

Query: 546 TDSVRAERALTEK-NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +D  RA    +EK  EA+ + D     K+  V +++++LR+PLT+++G+ DL+   K  +
Sbjct: 100 SDIARAINIASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILNEK--N 157

Query: 602 LNSKQSQYVEYIS-ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           L ++Q +Y   I+ A S  L +L++++ ++  ++ G+ +++   I +++LL ++   +  
Sbjct: 158 LTAEQIKYYSTIAFAKSQRLESLIDELFEITRMNYGVQQIDKKNINISELLVQLDLELYP 217

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +N +  ++     L +   D   L ++F  +L+NA+ + + G  V +    ++GD +
Sbjct: 218 LLEKNQLEARLHVAPNL-TINGDGNLLARVFENLLTNAVRYGNNGKFVDMNGYIEDGDVV 276

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             + N G SIPE+    +F+ F +   A   Q+   GLGL I ++ +  H G +S + S+
Sbjct: 277 VQIINYGESIPEEELPYLFDMFYTGDKARTVQKNSTGLGLFIAKNIVEKHNGKIS-AESN 335

Query: 779 EGVTTINCRIPSKE 792
              T    R+P +E
Sbjct: 336 VVRTIFEVRLPKEE 349


>gi|168187463|ref|ZP_02622098.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum C str. Eklund]
 gi|169294658|gb|EDS76791.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum C str. Eklund]
          Length = 463

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 125/233 (53%), Gaps = 14/233 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYISAS 616
           + + K +++K  F+  +S+ELR+PLT+I G+T  L    L   N+K S++   +  I   
Sbjct: 233 QEILKNEKLKTEFIASISHELRTPLTSIKGWTVALS---LCDPNNK-SEFEDGLTIIEEE 288

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L NLV ++LD + + +G + L    + +++LL  +++ +  +  ++NI + +    +
Sbjct: 289 TDRLSNLVEELLDFSKLSSGKITLKKDYVDIHELLIYLQKQLQPRASKDNIHLSLECKNE 348

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           + +  AD  RL Q F  IL NA+ F++    V +  + +    I ++K+NG  IP D   
Sbjct: 349 IPNIYADINRLKQSFMNILDNALKFTASDGKVKITLSSNKDSVIINIKDNGCGIPLDDLP 408

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTINC 786
            V  +F    ++GQ  +   G+GLSI    I+LH G++ I S  ++G   I C
Sbjct: 409 RVTEKF----YKGQNSKSKNGIGLSICSEIISLHNGNLQILSEENKGTEVIVC 457


>gi|161486828|ref|NP_719006.2| hybrid sensory histidine kinase BarA [Shewanella oneidensis MR-1]
          Length = 935

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 14/232 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y+  I  S
Sbjct: 291 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYINTIERS 345

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + L E    I+       + + V I+  
Sbjct: 346 ATNLLAIINDILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDIAPN 405

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++   L+A  D    +   V + G  I 
Sbjct: 406 VPDNVNGDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGIGID 465

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780
           E     +F  F        RR  G GLGL I +  +N  GG +  +SS D+G
Sbjct: 466 ESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKG 517


>gi|146280453|ref|YP_001170606.1| hypothetical protein PST_0056 [Pseudomonas stutzeri A1501]
 gi|145568658|gb|ABP77764.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 1012

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 13/242 (5%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R +TE+    ++ + +K+  V  VS+ELR+PLT+I G   L+    LG  +    Q +  
Sbjct: 770  RDITER----KRIERMKSELVSIVSHELRTPLTSISGALGLIVGGALGEPSPTMLQMLTI 825

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLN---YSTIVLNDLLNEVKQSIATKMHENNIRI 669
               +S  L  LV+D+LD+  + AG M L    +S +    L  E  Q  A K H   +++
Sbjct: 826  AHQNSLRLGRLVDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAK-HGVYLQL 884

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + +   +L   +AD  RL Q+ + ++SNA+ FS +G TV L A +        V++ G  
Sbjct: 885  EPLPTLQL---IADDDRLQQVLANLISNAVKFSPEGGTVSLGAQQRGAWVRIWVRDQGPG 941

Query: 730  IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I  +    +F +F    ++   Q+ G GLGL+I +  I    G +   S         C 
Sbjct: 942  IAPEFHARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCE 1001

Query: 788  IP 789
            +P
Sbjct: 1002 LP 1003


>gi|119773209|ref|YP_925949.1| signal transduction histidine kinase-like protein protein
           [Shewanella amazonensis SB2B]
 gi|119765709|gb|ABL98279.1| Hpt sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1021

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 30/262 (11%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E    A  IK  F+  +S+E+R+P+  ++G   LL+ ++L   + +Q  Y++  S
Sbjct: 383 LVEAREKAEAASRIKADFLACMSHEIRTPMNGVLGILSLLEKTEL---SIQQKHYLDVAS 439

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S+  LL L+NDILD + +++G  +++     L  LL++  Q  A +     +++ + IS
Sbjct: 440 TSAESLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAKGLKLLLDIS 499

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGD---FIFSVKNNGSS 729
              L     D  R+ Q+   ++SNA+ F+  G   V ++A+ D  +    + S+++ G  
Sbjct: 500 GIHLRWVRGDPGRIRQVLVNLVSNAIKFTEVGWIAVRVQASEDTANGVSLMVSIEDTGIG 559

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT---- 782
           I +D  + +F+ F        R   G GLGLSI +    L  G +  IS+ D G T    
Sbjct: 560 ISKDKQEVLFSPFTQADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISAEDAGSTFKFH 619

Query: 783 ---------------TINCRIP 789
                           +NCR P
Sbjct: 620 LRLKSEAASGAEWPPALNCRAP 641


>gi|330890979|gb|EGH23640.1| sensory box histidine kinase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 595

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  ++++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPETREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E +     K  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 QNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|266619368|ref|ZP_06112303.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288869123|gb|EFD01422.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 329

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTILL 621
           R+++  KN  + +V+++LR+PLT+IIG+ +LL    KL      Q +Y+      +  L 
Sbjct: 89  RESERTKNELITNVAHDLRTPLTSIIGYLELLSGDVKLDP--ELQKKYINIAYVKTKRLE 146

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+     ++ G + ++ + + +  LL+++ +       + N+  ++ S+       
Sbjct: 147 KLIEDLFGFTKMNYGKLTMHVAQVDVVKLLSQLLEEFYPSFVDKNLSYELQSNVPAKVIT 206

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD   L ++F  +++NA+ + + G  +++K   D+     SV N G  IP D    +FN+
Sbjct: 207 ADGNLLARLFDNLINNAIKYGADGKRIMVKLHADDEIVTVSVINYGYVIPADELPLIFNK 266

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788
           F  V  +      G GLGL+I ++ +++HGG ++++S   G V T+  ++
Sbjct: 267 FYRVEQSRSTNTGGTGLGLAISKNIVDMHGGTITVTSDLSGTVFTVKLKV 316


>gi|299821622|ref|ZP_07053510.1| sensor histidine kinase [Listeria grayi DSM 20601]
 gi|299817287|gb|EFI84523.1| sensor histidine kinase [Listeria grayi DSM 20601]
          Length = 601

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+    R+ +++K  F+ +VS+ELR+P++ + G+++ +    +     +   + E 
Sbjct: 354 RDMTEE----RRLEKMKTDFLNNVSHELRTPISMLQGYSEAI-IDGVAQNEEEVRAFAEI 408

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   S  +  LVN++LDLA ++AG   L+     L  L N+V  ++     EN++ + V 
Sbjct: 409 IYEESLRIGRLVNEMLDLARMEAGFTNLDKKAGSLTALANKVTANLQVLAEENHVSLAVS 468

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAARDNGDFIFSVKNNGSS 729
           S      +  D+ R+ Q+F  ++ NA+  + +      V ++  +       ++++NG+ 
Sbjct: 469 SAPADIPYFFDQDRMEQVFINLIMNAIQHTGREGHEGKVAVQLEKLEDRIKIAIQDNGAG 528

Query: 730 IPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I E     +F RF        RG+ +G G+GL+IV++ ++ HGG++ + S
Sbjct: 529 ISEADIPYLFERFYKADKARIRGETKGTGIGLAIVKNIVDAHGGYIKVES 578


>gi|291294435|ref|YP_003505833.1| histidine kinase [Meiothermus ruber DSM 1279]
 gi|290469394|gb|ADD26813.1| histidine kinase [Meiothermus ruber DSM 1279]
          Length = 423

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 8/243 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R   +  EAL + +  + + +  +++ELR+PLT + G  + ++    G +  + S+ 
Sbjct: 181 RLARNFDQMAEALERLEAERRAMIADIAHELRTPLTVMQGRLEAIQD---GVMPLEMSE- 236

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ +   + +L  LV D+  L+  DAG + L    + L +L + +  +    +    I +
Sbjct: 237 VDRLHQQARLLSRLVEDLRTLSLADAGRLNLTLQPLNLAELADRMADTFQAALEAKRITL 296

Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            + + +G +    AD  RL Q+   +LSNA+  +  G  + L+ A +       V ++G 
Sbjct: 297 ERRLPEGPV-LVRADSDRLAQVIGNLLSNALGHTPAGGWIGLEVAAEAAQARLRVLDSGP 355

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +    VF+RF  + A R +   G GLGLSIV++ + LH G V+  +  EG      
Sbjct: 356 GIPAEALNKVFDRFYRAEASRSRATGGSGLGLSIVKALVELHKGTVTARNRPEGGAVFEV 415

Query: 787 RIP 789
           R+P
Sbjct: 416 RLP 418


>gi|164504822|gb|ABY59649.1| BarA [Yersinia ruckeri]
          Length = 865

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKTS    L   Q+ Y++ I  S+  LL
Sbjct: 281 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTS----LTPTQTDYLQTIQRSANNLL 336

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + + +++      
Sbjct: 337 SIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQV 396

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           V D  RL Q+ + +L NA+ F+  G+  I  + R +          +++ G  I E    
Sbjct: 397 VGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSLRSHTRRQIKLAVEIQDTGIGISEQQQS 456

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I E  +    G +S  S
Sbjct: 457 QLFQAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHS 498


>gi|167574162|ref|ZP_02367036.1| probable two-component sensor/regulator [Burkholderia oklahomensis
           C6786]
          Length = 920

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 7/225 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E       A   K+  +  +S+ELR+PL  I+G   LL  S   +L ++Q   V  
Sbjct: 382 RELAEAKRIAESASHRKSEHIASISHELRTPLNGIVGALALLNRS---ALQAEQRDLVRV 438

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              SS+ LL +VN++LD + ++AG ++L      L  LL++   +I  +  E ++ ++  
Sbjct: 439 AQQSSSYLLGIVNNVLDFSRIEAGQLELASEESDLLALLDQAMLTIHIRAQEKSLSLRTF 498

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +   V  D  R+ QI   +L NA+ F+  G  + L   R      F V++ G  IP
Sbjct: 499 VAADVPRRVWLDGLRVRQILINLLGNAVKFTEHGH-IHLTVERRADMLAFVVEDTGKGIP 557

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +D    +F  FV    R    G GLGL I     NL  G + + S
Sbjct: 558 DDYQLDIFKPFVQV--RAHDSGNGLGLPIASRLANLMNGEILLDS 600


>gi|146338894|ref|YP_001203942.1| hypothetical protein BRADO1833 [Bradyrhizobium sp. ORS278]
 gi|146191700|emb|CAL75705.1| conserved hypothetical protein; putative sensor histidine kinase
           with a response regulator receiver domain
           [Bradyrhizobium sp. ORS278]
          Length = 787

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 189/431 (43%), Gaps = 57/431 (13%)

Query: 395 PNGQTLHVIVTSNP----------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           P+G+   + + ++P          R G +   +++T +   E   +   ++  + I+ L+
Sbjct: 189 PDGEIRWIRIVADPIDDVDGRFRERFGIV---QDITERKQAEVAADQAQQLLLDAIEALT 245

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG---THIRNIAATCSRYYNESDG----- 496
           +G  +F  D R  LSN  FR ++      + PG   T +   A        + DG     
Sbjct: 246 KGFVLFDKDDRFVLSNTRFREMFPGWATLMRPGISFTDLMRKAHDHGLVRPKGDGFEDWL 305

Query: 497 -----WDLFAAIITSFD----------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                W L  + +              D R S  GT+ L++D +  +  +     Q  L 
Sbjct: 306 ERKRAWHLGGSRMIEHREINGRWIQSVDHRISDGGTVCLVTD-ITAFKTVQAELEQK-LA 363

Query: 542 FVNV--TDSVRAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTD 592
           +V    +D    +R L      LR A +        K+ F+  +S+E+R+PL+ ++G  D
Sbjct: 364 YVQAIRSDLEEQKRELEATGAELRAARDAAEAANRAKSDFLAIMSHEIRTPLSGMVGMVD 423

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   SLN +Q +Y      S+ +LL ++NDILD + ++AG +K       +  L+ 
Sbjct: 424 LLRGT---SLNDEQKRYTSLAKESADLLLQVINDILDFSKLEAGKLKSECIDFDVPSLVE 480

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                +  K     + +KV     L  ++  D  R+ Q+   ++ NA+ F+ +G+  +  
Sbjct: 481 SAVSFMGEKARRRGLDLKVSFAPGLPQYLEGDPTRIRQVMLNLVGNAIKFTEQGAIEVHA 540

Query: 712 AAR--DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           + R  D+G  D    V ++G  + +++   +F+ FV       R+  G GLGL+I +   
Sbjct: 541 SHRELDDGAVDLRIEVIDSGIGMSQEIQAQIFDPFVQADTSISRKYGGSGLGLAICKQLC 600

Query: 766 NLHGGHVSISS 776
            + GG + + S
Sbjct: 601 AIMGGSIGVES 611


>gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 1236

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 14/245 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   +L+ ++  
Sbjct: 694 THKDITRQKSNEVALLEAKQDAELANMYKSEFLANMSHEIRTPMNAIIG---MLQLAQRT 750

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  +Q  Y+     S+  LL ++NDILD + ++AG ++L      L+ +L+ V    A 
Sbjct: 751 SLTVQQQDYLNKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHVIDINAI 810

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+ 
Sbjct: 811 KAQEKGVELLLYAPVTAGLILYGDPLRLGQVIVNLLSNAVKFTQTGEVEL--GCEDVGER 868

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V++ G  I +D    +F+ F        R+  G GLGLSI +  +++ GG 
Sbjct: 869 DDRITMKFWVRDTGIGISKDQQAMLFDAFSQADGSTTRKYGGTGLGLSISKHLVSMMGGT 928

Query: 772 VSISS 776
           + + S
Sbjct: 929 MQVES 933


>gi|116625119|ref|YP_827275.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228281|gb|ABJ86990.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 618

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 116/222 (52%), Gaps = 17/222 (7%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K++F+ ++S+ELR+PL+ I+  +DLL  S        Q + ++ IS S   LL L+
Sbjct: 222 ANRAKSTFLANMSHELRTPLSVILASSDLLNES---DPTPDQREDIDRISHSGKHLLGLI 278

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT---KMHENNIRIKVISDGKLGSFV 681
           +++LD+A +++G  +L    I  +DLL+ V+  I     +  + ++ +       +  +V
Sbjct: 279 DNVLDVAKIESGKQEL---AIAASDLLSTVRMVIEMMRGRAEDKHLALIYYQAPDVPRYV 335

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDM 734
             D  +L QI   +L NA+ F+ +G+ V L+ +   GD      F F + + G  +P+  
Sbjct: 336 RVDAPKLRQILINLLGNAIKFTREGA-VELRLSAKPGDEPGYAQFCFDINDTGVGMPQHD 394

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +F  F    +  Q+ G GLGL+I   F+ L GG + + S
Sbjct: 395 LDRIFEPFQQVGNPSQQAGTGLGLTITRRFVELMGGTLLVES 436


>gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
 gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
          Length = 916

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTD----LNATQRDHLTTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  +L   R            + + G  IPE    
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHS 504


>gi|298251695|ref|ZP_06975498.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546287|gb|EFH80155.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 972

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 9/237 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K++F+   S+ELR+PL  +     LL            +  +  +     
Sbjct: 738 NSARKELEQRKDAFISMASHELRNPLAALKLQATLLHRQLARQGLEASAPALSRMQTQIN 797

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  LV ++LD++ + AG ++     + L+ LL EV  ++      + +   V+      
Sbjct: 798 TVTRLVEELLDVSKIQAGRLEYIREAVNLDALLREVADTMQQIKTTHTV---VVRGATFC 854

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S V D+ RL Q+F+ +LSNA+ +S    TV ++ +         V+++G  IP++    +
Sbjct: 855 SLVGDKDRLGQVFTNLLSNAIKYSPDARTVEMELSATEDAVTVRVRDHGLGIPQEQRDKI 914

Query: 739 FNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF      G R+    G+G+GL IV   +  HGG +++ S+    +T    +P +
Sbjct: 915 FERFYRAV--GPRQPTIPGLGMGLYIVAEIVKGHGGTITVDSAAGKGSTFTVTLPKR 969


>gi|237808149|ref|YP_002892589.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500410|gb|ACQ93003.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 675

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 127/257 (49%), Gaps = 23/257 (8%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A++++ +  +  + A++ K+ F+  +S+E+R+PL  +I  ++LL  ++L   + +Q +  
Sbjct: 154 AQQSMIQARDEAQAANKAKSHFLATMSHEIRTPLNAVINLSELLLETQL---DDRQRKLT 210

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----KQSIATKMHEN 665
           + +      LL LVND+LD + ++AG ++L  ++  L+DLL+ +     K+++  K+H  
Sbjct: 211 QGVCEGGRSLLQLVNDVLDFSRIEAGRLELVTTSFRLHDLLDGLASLFEKEAVIKKLHFG 270

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD---- 718
                 IS        AD  RL QI   +L+NA+ F+ KGS  I   + AA         
Sbjct: 271 ----LSISPDVPDVIAADPSRLRQILQNLLANAIKFTEKGSVSIAVRMLAANQQKPPDSV 326

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              IF + + G  I E   + +F  F        RR  G GLGL+I    + L GG +  
Sbjct: 327 PMMIFHISDTGIGISESDQQRLFQEFSQVDTNLDRRFGGSGLGLAIAARLVMLMGGKIGC 386

Query: 775 SSSDEGVTTINCRIPSK 791
            S     +T    +P+K
Sbjct: 387 HSVAGIGSTFWFTLPAK 403


>gi|188582812|ref|YP_001926257.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           populi BJ001]
 gi|179346310|gb|ACB81722.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           populi BJ001]
          Length = 1120

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 117/237 (49%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 644 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 701

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     ++ +    
Sbjct: 702 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLKFRFTRP 761

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+++G  V L+        +F++++ G  IPE 
Sbjct: 762 EILPAVVATDEKRLRQILLNLLSNAIKFTAEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 820

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F   +    R   G GLGL+I      + GG +++ S     T+   R+
Sbjct: 821 DLGRIFEPFERGSMPAARAAPGTGLGLTIAGLLAQVMGGEITVESRVGQGTSFRVRL 877


>gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 916

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTD----LNATQRDHLTTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  +L   R            + + G  IPE    
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHS 504


>gi|37526937|ref|NP_930281.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786370|emb|CAE15423.1| sensor protein (capsular synthesis regulator component C)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 938

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 128/252 (50%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+++  VR E++L E   A  +A+  K+ F+  VS+ELR+PL  IIG  +LL+     
Sbjct: 442 VLVDISVRVRMEKSLQEMALASEQANYSKSMFLATVSHELRTPLYGIIGNLELLQAH--- 498

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++  + +  ++ SS +LL +++DILD + +++  +K+        ++++ V  +   
Sbjct: 499 SLPAESVRLLSTMNNSSALLLKIISDILDFSKIESKQLKIESREFSCQEVISHVISNYLP 558

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +  ++  D  RL Q+ S +L+NA+ F+  G  VI+    D    
Sbjct: 559 LVVKKPLTLYCYIEPGVPDYICNDPVRLQQVISNLLNNAIKFTDTG-CVIIHVTVDKDYL 617

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +K+ G  I +     +F+ F  +        +G GLGL+I E  INL  G + + S 
Sbjct: 618 YVRIKDTGVGISDKALIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQ 677

Query: 778 DEGVTTINCRIP 789
            +  +  + R+P
Sbjct: 678 PQIGSMFSIRLP 689


>gi|182419613|ref|ZP_02950858.1| two-component sensor histidine kinase [Clostridium butyricum 5521]
 gi|237665475|ref|ZP_04525463.1| two-component sensor histidine kinase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376503|gb|EDT74080.1| two-component sensor histidine kinase [Clostridium butyricum 5521]
 gi|237658422|gb|EEP55974.1| two-component sensor histidine kinase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 363

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILL 621
           R+ +  KN+ + ++S++LR+PLT+I+GF DL++ S   + + KQ + Y       +  L 
Sbjct: 137 RQWENQKNNLITNLSHDLRTPLTSILGFLDLIEKS---TNDDKQINHYCNIALEKAKKLK 193

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++ + +   ++   +KLN   I +  L+ +V      +  +NN+  ++IS  K     
Sbjct: 194 YSIDQLFEFTKINNADLKLNKYEIGVEALIEQVTMGFIPEFEDNNMEYRIISKSKGLKIN 253

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD   L + F  I+SN++ ++++G  + +   +++   I    N G  I ++  +++FNR
Sbjct: 254 ADPILLGRAFENIISNSIKYANEGKYLNIIIDKESDSAIIKFINYGDEIKQEDLENLFNR 313

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        R+ G GLGL+IV++ +  H G +S++SS+E  T    ++P
Sbjct: 314 FYRVEKSCSRKEGTGLGLAIVKTLVECHSGEISVTSSNEE-TEFKIKVP 361


>gi|110596751|ref|ZP_01385041.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341438|gb|EAT59898.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 672

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 15/246 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKN----SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           D  + +R L E  +  R   EI N     F+ ++S+E+R+PL  ++G T+LL  +    L
Sbjct: 259 DKEQIQRILIESLKKSRVEAEIANRAKSEFLANMSHEIRTPLHAVVGMTELLLDT---PL 315

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           NS Q  Y + I AS+  L  L+NDILD   +++G +    S   L  L  E+   +    
Sbjct: 316 NSTQRHYTDTIQASTKQLHQLINDILDFTKIESGQLDKVKSPFNLRALFTELSSILTGNA 375

Query: 663 HENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDF 719
            +  +++  +I +   G  +     L Q    ++ NA+ F+ KG  V+  A      G+ 
Sbjct: 376 EKAGLQLSFIIPESVAGDLIGYPIYLKQALINLIQNAIKFTYKGGIVVQVATESETPGEI 435

Query: 720 IF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  IP++  + VF RF        R+  G GLGL+I    +   GG ++++
Sbjct: 436 TLRISVKDTGIGIPDEKKELVFQRFTQLDSSATRKAGGAGLGLAISTQLVEFMGGKLNLN 495

Query: 776 S-SDEG 780
           S  +EG
Sbjct: 496 SRKNEG 501


>gi|26988170|ref|NP_743595.1| heavy metal sensor histidine kinase [Pseudomonas putida KT2440]
 gi|24982904|gb|AAN67059.1|AE016334_8 heavy metal sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 460

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 7/224 (3%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F   +++ELR+PL+N++G   +    +  + N ++   +E      T L  ++ND+L 
Sbjct: 242 SQFSDDLAHELRTPLSNLMGKAQVTLARERDNANYRE--VLEDSIEELTRLNRIINDMLF 299

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           LA V     ++    + L+D    V +  A       I ++V      G+ + DR    +
Sbjct: 300 LAQVSQPHTQVALKPLALSDEAARVVELFAYSAELKEIELRVQG---WGTALGDRLMFQR 356

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
             S +LSNA+  S +G  V L+  R   + I SV+N G  +P +    +F RF  V +  
Sbjct: 357 ALSNLLSNAIRHSPEGKPVALRIERSGSEVILSVENQGPGVPAEHQSRLFERFYRVGSGR 416

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                G GLGL+IV+S + LHGG V +SS   G T      P++
Sbjct: 417 SRLEGGTGLGLAIVKSIMQLHGGRVEVSSCPLGPTRFTLVFPAE 460


>gi|58580142|ref|YP_199158.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622139|ref|YP_449511.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58424736|gb|AAW73773.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366079|dbj|BAE67237.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 769

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 94  EQELLRAKQAAEAAMLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             ++SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 151 TATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLRLSL 210

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 211 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 270

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 271 GIGIAPDQQTRLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 330

Query: 785 NCRIP 789
              IP
Sbjct: 331 WFEIP 335


>gi|117926967|ref|YP_867584.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117610723|gb|ABK46178.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 667

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 9/229 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K  F+  +S+E R+P+ ++IG  D+L+ +    L+ +Q +Y++ +  ++  L ++V +
Sbjct: 162 EAKRVFIAKMSHEFRTPMNSMIGMLDMLEGT---PLSEEQFEYIDSMRQATDHLTSMVGN 218

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQ 685
           +LD+  ++AGI+K+      L  L+  V   I     +  I  I  IS      F+ D  
Sbjct: 219 LLDITQLEAGIIKIKEKPFSLIALVKNVINIIRPLAFKKKILFIPYISPDIAPWFIGDAN 278

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           RL QI   +L NA+ ++  GS  +L +A+      +  F V + G  I  +  + +F  F
Sbjct: 279 RLQQILVNLLGNAIKYTHWGSVALLISAKPVNSRYNVEFKVVDTGDGIDLENQEKIFQAF 338

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V  A+       G GLGLSI ++ ++L  G + + S+ +  +T +  IP
Sbjct: 339 VRGAYNNAETTEGTGLGLSICKNLVDLMQGTIELKSTPQHGSTFSVSIP 387


>gi|303248422|ref|ZP_07334682.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302490220|gb|EFL50138.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 606

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 120/241 (49%), Gaps = 17/241 (7%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLK-----------TSKLGSLNSKQSQY---VEYI 613
           +K +F+  VS+EL++PLT+++GF  +++            +    L+++  ++   ++ +
Sbjct: 365 VKANFLSLVSHELKTPLTSMVGFAQVMRKRLERGPLPQAVAGRPELDAEMVRFRDNLDIM 424

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 L  +++++L+L++++AG   L    +   ++++         M E  +R     
Sbjct: 425 LGEGRRLAQMIDNVLELSSLEAGETPLAMGMVSAAEIVDRAVSPFTEVMTEKGLRYACAI 484

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     DR+RL+ +   + SNA+ F+  G  +  +  R+    + SV+++G  IP +
Sbjct: 485 PSDLPPLRCDRERLVYVLRHLFSNAVKFTESGH-IACRVTREGKMAVISVEDSGPGIPPE 543

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             ++VF +F  + +   G+  G+G+GL+   + +  HGG + I+      +T++  +P  
Sbjct: 544 KREAVFEKFLQLGDNLTGKMPGLGIGLAAARAVVEYHGGSIRITGEPGKGSTVSVTVPLA 603

Query: 792 E 792
           E
Sbjct: 604 E 604


>gi|300868056|ref|ZP_07112694.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333976|emb|CBN57872.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1224

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 41/291 (14%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +++D  +AE +     EA   A+  K++F+ ++S+ELR+PL  IIG++++L      
Sbjct: 649 TVEDISDRKKAEVSCQLALEAAESANRAKSTFLANMSHELRTPLNAIIGYSEMLAEEAED 708

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                    ++ I  +   LL+L+NDILD++ ++AG M +      +  L++ V  +   
Sbjct: 709 LAVKDFIPDLDKIRTAGKHLLSLINDILDISKIEAGRMDVYLENFDIPALIDGVVATAQP 768

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------ 714
            + +N   +KV+     G+  AD  ++ QI   +LSNA  F+ +G T+ L   R      
Sbjct: 769 LVEKNGNTLKVLCPNSTGTMYADVTKMRQILLNLLSNAAKFTQEG-TITLTVERVKHEKL 827

Query: 715 --------------------------------DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
                                           D    IF V + G  +     K +F  F
Sbjct: 828 TSPEVNFIPEQSQGTLLGLLQNPDILSQFLIYDCDSLIFRVADTGIGMNPQQLKQLFQPF 887

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   R+  G GLGL+I + F  + GG +++ S+    T     +PS+
Sbjct: 888 TQGDASTTRKYGGTGLGLAISQRFCQMMGGDIAVESALGEGTVFTVVLPSE 938


>gi|196042334|ref|ZP_03109608.1| putative sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196047736|ref|ZP_03114936.1| putative sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196021426|gb|EDX60133.1| putative sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196026828|gb|EDX65461.1| putative sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 337

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 535 NAQTML------TFVNVTDSVRAERALTEKNE-ALRKADEIKNSFVQHVSYELRSPLTNI 587
           N QT L      +F N+  S+    A  EK     ++++E +   +  +S+++R+PLT+I
Sbjct: 68  NLQTRLFTSNDQSFHNIVFSINELIAELEKVRIKAKRSEESRKQLLSSISHDIRTPLTSI 127

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG+ D LK     S   KQ +Y++ +   S  L +LV++I ++A +DA    L    +  
Sbjct: 128 IGYIDALKDGVATSEIEKQ-EYLKILYMKSNNLKHLVDEIFNMAKLDANEFPLKEEKLDF 186

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++  EV      ++ ++NI+++V+        +AD   L++I   ++ NA+ +   G  
Sbjct: 187 SEVTREVLIEFLPEISKHNIKLQVLMPESTCPIIADHLSLMRIIGNLMKNAIYYGKDGKI 246

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFI 765
           + ++    +  +   + + G  IP+   ++VF R      +      G GLGLSI ++ +
Sbjct: 247 IGVELLETDAAYELLIWDKGPGIPKHDLQNVFERMYRSEQSRNSSFGGSGLGLSISKALV 306

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             +GGH+ + S     TT    IP
Sbjct: 307 ERNGGHIWVESIPWERTTFGFSIP 330


>gi|167648714|ref|YP_001686377.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167351144|gb|ABZ73879.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 593

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 9/214 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++FV  +S+ELR+P++ I+     L +      ++    + + I+ +  ++  L+ND+L
Sbjct: 224 KSAFVAMISHELRTPISAILAGAARLHSD---VPDAASKSHAQLIADAGAMMRTLLNDLL 280

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRL 687
           DL+ +DAG M ++ S   L   + +  +          +R++V     L  +VA D  RL
Sbjct: 281 DLSRLDAGRMAVDQSPFDLRQAMADTLRLWRPDAQRKGLRLRVEGAANLPRWVAGDSLRL 340

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFS--VKNNGSSIPEDMCKSVFNRFVS 744
            Q+ + +LSNA+ F+ +G+  +  AARD G+  IF   V + G  + E+    +F  F  
Sbjct: 341 RQVLNNLLSNAIKFTPRGAVTVRLAARDEGEHLIFEAIVADTGPGLTEEQLSRLFTPFDQ 400

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            A    R   G GLGL I      L GG ++++S
Sbjct: 401 LASSVVREHGGSGLGLVISRELTRLMGGDLTVTS 434


>gi|59713543|ref|YP_206318.1| sensor histidine kinase [Vibrio fischeri ES114]
 gi|59481791|gb|AAW87430.1| sensor histidine kinase, GacS/BarA family [Vibrio fischeri ES114]
          Length = 864

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 132/248 (53%), Gaps = 16/248 (6%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  + +F   T+ +  E++   K EAL KA   K+SF+ ++S+E+R+PL  IIG +D+L 
Sbjct: 326 ADLIYSFNQETEYLEIEKS---KAEALAKA---KSSFLANMSHEIRTPLNGIIGMSDILT 379

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            + L  +   QS+YVE I  SS  LL L+NDILDL+ +++G + +      + ++  +  
Sbjct: 380 ETDLTPV---QSEYVETIDTSSQTLLLLINDILDLSKIESGNLVIVPQESNVEEVAYDTL 436

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTV--ILKA 712
             I +K  E  + ++V     L   V  D  RL Q+   ++SNA+ F+  G+ +  I   
Sbjct: 437 TVILSKATEKGLALQVDIANDLPELVMLDEHRLRQVLMNLMSNAVKFTQDGAVILSINYQ 496

Query: 713 ARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            ++NG     FSVK+ G  I +D C+ +F  F        R+  G GLGL+I    + + 
Sbjct: 497 QKENGRGLLFFSVKDTGIGISKDKCEQIFEPFTQEDSSITRQFGGTGLGLAICRQLVEML 556

Query: 769 GGHVSISS 776
           GG + + S
Sbjct: 557 GGELKVDS 564


>gi|82471111|gb|ABB77561.1| ERS type ethylene receptor [Ziziphus jujuba]
          Length = 632

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 34/268 (12%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA + L ++N AL +A          +N F+  +++E+R+P+  II  + LL  +  
Sbjct: 315 ESMRARQQLVDQNLALDRARREAETAIHARNDFLSVMNHEMRTPMHAIIALSSLLLET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E +  SS +L  L+ND+LDL+ ++ G ++L+  T  L+ +  EV   I 
Sbjct: 373 -DLTPEQRVMIETVLKSSNLLATLINDVLDLSRLEDGSLELDIGTFNLHGVFREVVNLIK 431

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ 712
                  + + +I    L  S + D +RL+Q    I+ NA+ F+  G   I+ +      
Sbjct: 432 PVASVKKLPVTLILAPDLPFSAIGDEKRLMQTLLNIVGNAVKFTKAGYVSIIASIAKPES 491

Query: 713 -----------ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRG-VGLG 757
                          G F     VK++G  +      ++FN+F +  +   +  G  GLG
Sbjct: 492 IREWRPPEFYPVSSEGHFYVQVQVKDSGCGVSHQDIPNLFNKFALPRSGSSKINGSTGLG 551

Query: 758 LSIVESFINLHGGHVSISSS--DEGVTT 783
           L+I + F+NL GGH+ I S   D G T 
Sbjct: 552 LAISKRFVNLMGGHIWIESEGIDRGSTA 579


>gi|327440829|dbj|BAK17194.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 592

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 120/246 (48%), Gaps = 4/246 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           DS+R   A+        K +++K+ F+ +VS+ELR+P+  + G+++ +    + +   ++
Sbjct: 346 DSIRGAVAVIRDKTEETKLEKLKSDFIANVSHELRTPIAMLQGYSEAI-IDGVVTTEEER 404

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  I   S  +  LV D+LDLA +++G M L    + L  ++  +         E +
Sbjct: 405 IDMIRVIYDESQRMSRLVTDLLDLARMESGHMTLYKEEVPLVTVIERMTHKFDQTAKEKH 464

Query: 667 IRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +++++ +D    + ++ D  R+ Q+ + ++ NA+  +    +V +    +       V +
Sbjct: 465 VQLQIETDFSDETLISIDEDRIEQVLTNLIDNAIRHTPADGSVTVSMINEQNYAKIQVSD 524

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D    VF RF     A    + G GLGL+I ++ +  H G +S+ S ++  TT
Sbjct: 525 TGQGIPQDDLPYVFERFYKADKARTRSKGGTGLGLAITKNIVEAHNGRISVDSVEQQGTT 584

Query: 784 INCRIP 789
               +P
Sbjct: 585 FTFYLP 590


>gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
 gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
          Length = 916

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTD----LNATQRDHLTTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  +L   R            + + G  IPE    
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHS 504


>gi|266623166|ref|ZP_06116101.1| sensor protein VanS [Clostridium hathewayi DSM 13479]
 gi|288865033|gb|EFC97331.1| sensor protein VanS [Clostridium hathewayi DSM 13479]
          Length = 381

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 130/241 (53%), Gaps = 6/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L E+ +  ++A++ KN  V ++++++++PLT++IG+  LL  +     + ++++Y+ 
Sbjct: 135 KRTLAERADKAKRAEQQKNDLVVYLAHDIKTPLTSVIGYLSLLDETP-DMPDEEKAKYIH 193

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                +  L  LVN+  ++    +  + L+ + I L  ++ ++   +  +++     I+ 
Sbjct: 194 TAWEKANRLRILVNEFFEITRSHSESLPLHKAKIDLFYMIAQISDELYPQLNACGKIIEN 253

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  + S   D  +L ++F+ IL NA+ +S + S VI  +AR+  ++      N   IP
Sbjct: 254 HVDEDI-SVYGDSDKLARVFNNILKNAISYSEENS-VIKVSARELSEWTVIRFENDGEIP 311

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED    +F++F  +SNA   +  G GLGL+I ++ I LHGG +   SS+ G T     IP
Sbjct: 312 EDKLNVIFDKFCRLSNARLSETGGSGLGLAIAKNIIVLHGGQIRAESSN-GRTAFIIEIP 370

Query: 790 S 790
           S
Sbjct: 371 S 371


>gi|206578572|ref|YP_002236863.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae 342]
 gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae 342]
          Length = 916

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTD----LNATQRDHLTTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  +L   R            + + G  IPE    
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHS 504


>gi|254410303|ref|ZP_05024083.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183339|gb|EDX78323.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 747

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 123/255 (48%), Gaps = 15/255 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R +  +       ++  ++K+ F+   S+E R+PLT I    +LL+  +    +
Sbjct: 495 DITERQRVQAEILNALAQEKELSDLKSRFITVTSHEFRTPLTTIHSSAELLEHYRHKWSD 554

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY---------STIVLNDLLNEV 654
            KQ  ++  I  S   +  L+ND+L L   DAG + L+          +T+V    LN+ 
Sbjct: 555 EKQQMHLHRIQGSVKYMTKLLNDVLILGKTDAGKLALSLEPINLELFCATLVKELQLNQP 614

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           + S+    +E  + +    D ++     D+Q L QI   +LSNA+ +SS   T+ +K   
Sbjct: 615 ELSVINISYEWELTL----DAQV--IYLDKQLLQQILENVLSNAIKYSSSEETIEVKLKG 668

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       +++ G  IP D    +F  F    + G   G GLGL+IV+  +++H G++ I
Sbjct: 669 NREQITLEIRDRGIGIPLDDQDRLFEAFHRGTNVGTIPGTGLGLTIVKKCVDIHQGNIDI 728

Query: 775 SSSDEGVTTINCRIP 789
           +S     TT+   +P
Sbjct: 729 NSIIGVGTTVTVTLP 743


>gi|171689430|ref|XP_001909655.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944677|emb|CAP70788.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2424

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 112/214 (52%), Gaps = 17/214 (7%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +A + K+ F+ +VS+ELR+PL  +IG ++LL+ S    LN +Q +  + I  S+ +LL +
Sbjct: 1938 EATKAKSIFLANVSHELRTPLNGVIGNSELLRDS---GLNREQMEMADSIRVSADLLLTV 1994

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV 681
            +NDILD + ++A  MKL        +++ EV ++++    E   +  +K++ D  L   +
Sbjct: 1995 INDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIVQDINLPPML 2054

Query: 682  --ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPED 733
               D  RL Q+   ++ N++ F+  GS  I   AR      D     F VK+ G  I + 
Sbjct: 2055 IYGDPIRLHQVLGNLIGNSLKFTEDGSITI--GARIDEETPDKATLTFWVKDTGIGISQQ 2112

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
              +++F  F        R+  G GLGLSI +S I
Sbjct: 2113 HLENLFQPFSQADASTARKYGGSGLGLSICKSLI 2146


>gi|150388840|ref|YP_001318889.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
 gi|149948702|gb|ABR47230.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
          Length = 542

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 12/252 (4%)

Query: 547 DSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +  R E+  +EK+E  L +A   ++ FV+ + +E+R+PL +IIG  +L+  +    L  +
Sbjct: 2   NKTRKEKC-SEKDEVYLERARSNESEFVRSIIHEIRTPLNSIIGMAELMSIT---DLTLE 57

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  Y+E I  S  IL+N VND L+L+ ++   + ++     LN+L+ +V + +  K+ + 
Sbjct: 58  QQNYIETIQLSGQILINTVNDFLELSKMEFKGLTIDDEVFELNELIEDVLKIMDEKIKKK 117

Query: 666 NIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI-- 720
            +R+    D  L  F    D+ R+ QI   ++SNA+ F+ +G   VI + A +  + +  
Sbjct: 118 KLRLNKKVD-LLSEFHVKGDKLRVQQILLNLISNAVKFTEEGKIEVICEIAHEREEIVEI 176

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            F V + G  I  +    +F+ F          G GLGLSI +  + L GG + + S   
Sbjct: 177 QFEVIDTGGGIAPESIDIIFDPFTQINRTESHEGTGLGLSICKKLVELMGGEIGVESQLR 236

Query: 780 GVTTINCRIPSK 791
             T    RIP K
Sbjct: 237 NGTRFWVRIPLK 248


>gi|47097090|ref|ZP_00234660.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498603|ref|ZP_03666952.1| sensor protein ResE [Listeria monocytogenes Finland 1988]
 gi|254827168|ref|ZP_05231855.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|254831452|ref|ZP_05236107.1| sensor protein ResE [Listeria monocytogenes 10403S]
 gi|254899356|ref|ZP_05259280.1| sensor protein ResE [Listeria monocytogenes J0161]
 gi|254912505|ref|ZP_05262517.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
 gi|254936832|ref|ZP_05268529.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284802392|ref|YP_003414257.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284995534|ref|YP_003417302.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|47014535|gb|EAL05498.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258599550|gb|EEW12875.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|258609428|gb|EEW22036.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284057954|gb|ADB68895.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284061001|gb|ADB71940.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|293590490|gb|EFF98824.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
          Length = 596

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +   
Sbjct: 335 AILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-ID 393

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  +
Sbjct: 394 GVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISN 453

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAAR 714
                 EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   
Sbjct: 454 FDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTI 513

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHG 769
           D    + + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H 
Sbjct: 514 DEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHN 573

Query: 770 GHVSISS 776
           G +S+ S
Sbjct: 574 GKISVES 580


>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1202

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D  R E  L +       A+  K+ F+ ++S+E+R+P+  ++G  +LL  ++L    
Sbjct: 517 DISDRKRVEDELKKAMLDAESANRSKSEFLANMSHEIRTPMNGVVGMMELLSNTEL---T 573

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  ++     S+  LL ++NDILD + ++AG ++L      L +L+ +V   +A ++ 
Sbjct: 574 PEQQSHMRTARNSAESLLTIINDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQRVD 633

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718
              + +   +   L   VA D  RL Q+   ++ NA+ F+ +G   V +   R + D   
Sbjct: 634 SEKLELLHNAPADLPMQVAGDPTRLRQVLVNLVGNAVKFTPEGEVEVRMTVERQDADTVT 693

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +  V++ G  I E +   +F  F        RR  G GLGL+I +  + L GG V  SS
Sbjct: 694 VLTEVRDTGIGIDEAVRPRLFRMFTQADGSTTRRFGGTGLGLAISKQLVELMGGEVGFSS 753


>gi|325288684|ref|YP_004264865.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964085|gb|ADY54864.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 584

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 165/356 (46%), Gaps = 40/356 (11%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI---RNIAATCSRYYNESDGWDL 499
           +S+GV     +GR+ L NP  + L     + L   + I    N+A   S          L
Sbjct: 256 MSDGVITVDIEGRVVLINPQAKHLLNM--SNLEKNSRIDKDENLARLSS----------L 303

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFV--NVTDSVRAERALT 556
           F+ ++   +  ++ +     ++++  L   + PL + +Q +LT V   + D+ R      
Sbjct: 304 FSGVLAQKEQAKEEI-----MINEKNLTVRLSPLFDPSQLILTGVIAVLQDTTRE----- 353

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                  K ++++  FV +VS+ELR+P++ I G+ + L      S   +Q Q+++ I   
Sbjct: 354 ------YKLEQMRRDFVANVSHELRTPISLIQGYAEALADHVEDS-PVQQDQFMKIIIEE 406

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L  LV D+L+L+ + +G   L    I L  +  +VK+       + NI+ K   +  
Sbjct: 407 SNRLKRLVEDLLELSRLQSGKADLEKEEINLFQVSEQVKEKYDQLFIQRNIKFKAEINQD 466

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            G+  AD+    QI   ++ NA+ ++  G T+ L +AR        + + G  I E+   
Sbjct: 467 AGTVWADKFMFEQIVLNLIDNAICYAP-GGTITLTSARTQKGIELCLSDTGKGISEEDLP 525

Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F RF   A + + R   G GLGLSIV++ +  HGG +S+ S     T  + + P
Sbjct: 526 YLFERFY-RADKSRNRESGGTGLGLSIVKNLVQAHGGIISVESEAGKGTKFSLKFP 580


>gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
 gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
          Length = 1197

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 12/220 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           A+  K+ F+ ++S+E+R+P+  IIG + L LKT     L   Q  Y+  +  S+  LL L
Sbjct: 477 ANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTD----LTKAQRNYIHKVKLSADSLLGL 532

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILD + ++AG + +      L ++L+ +   +  +  E  + + +  D  +  + V 
Sbjct: 533 INDILDFSKIEAGKLDIEQVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTTLVG 592

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSV 738
           D  RL QI   + +NA+ F+ KG   I ++    NGD +   FSV+++G  +  +    +
Sbjct: 593 DPLRLGQILINLANNAVKFTEKGEIKISIRVVERNGDDLVLQFSVEDSGIGMTPEQTAKL 652

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F++F        R+  G GLGL+I +    L GG + + S
Sbjct: 653 FSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIEVQS 692


>gi|313623104|gb|EFR93377.1| sensor histidine kinase ResE [Listeria innocua FSL J1-023]
          Length = 596

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 129/246 (52%), Gaps = 9/246 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +    
Sbjct: 336 ILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-IDG 394

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  + 
Sbjct: 395 VAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVIANF 454

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAARD 715
                EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   D
Sbjct: 455 DVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTID 514

Query: 716 N--GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHGG 770
               + + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H G
Sbjct: 515 ETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNG 574

Query: 771 HVSISS 776
            +S+ S
Sbjct: 575 KISVES 580


>gi|196048232|ref|ZP_03115409.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196020969|gb|EDX59699.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 456

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 13/238 (5%)

Query: 559 NEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYIS 614
           N  ++K D+   +KN F+  +S+ELR+PLT I G+++ L T  + SL  K+  Q +  I+
Sbjct: 224 NHMVKKIDQTTHMKNEFIASISHELRTPLTGIKGWSETLGT--VDSLTEKEIKQGMSIIT 281

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L++LV ++LD + ++     L    I+L +L+NE    + TK  +    IK++S+
Sbjct: 282 QETDRLIHLVEELLDFSKLELDYPNLYKENILLQELINESIWQLGTKAEQR--EIKIVSE 339

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            +      DR RL Q+F  ++ NA+ +S+ KG   +    +D    +  + + G  I E+
Sbjct: 340 LEEVEITGDRDRLKQVFLNLIDNAIKYSNIKGIITVTLLKKDQ--VLIRITDQGIGIAEE 397

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +   F     +    G G+GL+IV+  + LH G + I S     TTI  ++P++
Sbjct: 398 HLPYINESFYQVNTKSS--GSGIGLAIVKKIVELHNGSIQIDSELGIGTTITIKLPTE 453


>gi|153867648|ref|ZP_01997955.1| PAS domain protein [Beggiatoa sp. SS]
 gi|152145030|gb|EDN72043.1| PAS domain protein [Beggiatoa sp. SS]
          Length = 166

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 4/152 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  E    A+  K+ F+ ++S+E+R+P+  +IGF++LL        + K   Y++ I 
Sbjct: 1   MKEAKETAESANRAKSEFLANMSHEIRTPMNAVIGFSELLSQR---ITDKKHKGYLDAIQ 57

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   L+ L+NDILDL+ ++AG +++ Y  +    L NE+KQ  A KM E N+ + V  D
Sbjct: 58  TAGKSLMTLINDILDLSKIEAGRLEIEYEAVNPYTLFNELKQIFAIKMAEKNLELIVDMD 117

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
             L S  + D  RL Q+   +L NA+ F+ KG
Sbjct: 118 KALPSMLILDEVRLRQVLLNLLGNAIKFTDKG 149


>gi|161521237|ref|YP_001584664.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
 gi|189352590|ref|YP_001948217.1| putative and unique signal transduction histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160345287|gb|ABX18372.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
 gi|189336612|dbj|BAG45681.1| putative and unique signal transduction histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 526

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A + A E K++F+  VS+ELR+P T I+G+ D+L  +   +   ++   V  I  +   L
Sbjct: 156 AAQSASESKDAFIAAVSHELRAPSTAILGWADMLGDAADDAAVVREG--VAVIRRNILAL 213

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV+D+LD + +  G   +  + + + + LN   Q +A       +RI        G  
Sbjct: 214 TRLVDDLLDASRLGQGKFAIESAPVSIAECLNAALQDVAPIAETKGVRIAE-PGADDGLV 272

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+F  +L NA+  +  G  ++             + + G+ IP D  + +F 
Sbjct: 273 SGDAARLEQVFRNLLDNALKHTPSGGEIVPSLVVGPDTVQVRIADTGAGIPADRLERIFE 332

Query: 741 RFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            F+   H    Q  G+GLGLSI  S + +H G ++  S   G
Sbjct: 333 PFLQIRHPLHAQAGGLGLGLSIARSIVVMHRGEITAYSDGLG 374


>gi|83310363|ref|YP_420627.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945204|dbj|BAE50068.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 685

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 162/366 (44%), Gaps = 35/366 (9%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            EG+      GR+   NPA RS+  W   E+ +    H  N       +++  DG     
Sbjct: 336 GEGICGIDIQGRVTFMNPAARSMLGW-LHEDPIGRNLHAAN-------HHSRPDGAAYPG 387

Query: 502 A----IITSFDDERKSLQG-----------TLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           +      T  D + + +QG            +E+++  ++E   +       +L F +++
Sbjct: 388 SECPIAHTLADGQTREVQGETFWRLNGTQFPVEMIATGLVEDGGV----KGAVLMFRDIS 443

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D + +E+AL  +   L +++     F    S++LR PL  +  F  LL+     +L+   
Sbjct: 444 DRLASEQALKAQATELSRSNADLEQFAYVASHDLREPLRQVASFVSLLERRYGPTLDDDA 503

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+ Y    +  +  L+ D+LD + +  G        + L  +++E   ++ T + E+ 
Sbjct: 504 RDYITYAREGAKRMDRLIIDLLDFSRI--GHHSQAVQQVNLGSVIDEAIANLGTVIVEHG 561

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVK 724
            ++   ++  +   V  R  ++++F  ++ NA+ +     T I++  A RD+  ++ SV 
Sbjct: 562 AQVDRAAEMPVLGLV--RDDMVRLFQNLIGNALKYHHPERTPIVRIAARRDDEGWVVSVI 619

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +NG  I     + +F  F     R +  G G+GL+I +  +   GG + +  ++ G +  
Sbjct: 620 DNGLGIDPQFSERIFGIFQRLHTRDKFEGTGIGLAICKKIVERAGGRIWVEPAEGGGSVF 679

Query: 785 NCRIPS 790
           N R+P+
Sbjct: 680 NVRLPA 685


>gi|32477267|ref|NP_870261.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1]
 gi|32447818|emb|CAD77336.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1]
          Length = 1182

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 134/286 (46%), Gaps = 34/286 (11%)

Query: 531 IPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           IP+ +A      + +VT    A  A+ E   A  +A+  K  F+  +S+ELR+PL  I G
Sbjct: 410 IPVGDATGQAVIIRDVTLQRAAFEAMREAKAAAEQANRTKTQFMAGISHELRTPLGGIRG 469

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            TDLL      +L +   +YV  I+ ++ +L +++ DILD A ++AG + ++   + L++
Sbjct: 470 LTDLLGQQ---TLPTAARRYVNLIAQNTELLRDVIEDILDFAAIEAGRVAIDPVPVDLHE 526

Query: 650 LLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST- 707
           ++ +    +A ++ +  +R+ + I+       +AD +R+ QI   +  NA+ F+++G   
Sbjct: 527 VVGDAFGCLAVRVADKPVRLCLSIAPDTPRRVIADPKRIRQIVINLAGNAIKFTNRGEVS 586

Query: 708 ----VILKAARDNGD--------------------FIFSVKNNGSSIPEDMCKSVFNRFV 743
                I  A   +G+                    F  +V + G  I  +    +F+ F 
Sbjct: 587 LRLGPIGDAPPSHGNDANSPEITTNGSTDDTPMAWFELTVSDTGIGIAPENQSRIFDAF- 645

Query: 744 SNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             A RG   Q  G GLGL+I        GG ++++S  +  +   C
Sbjct: 646 EQADRGTNKQFGGTGLGLAIARGLAQRMGGDITVTSQVDLGSQFQC 691


>gi|298711257|emb|CBJ26502.1| Histidine kinase receptor [Ectocarpus siliculosus]
          Length = 773

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 58/287 (20%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           VRAER              +K+ F+  +S+E+R+P+  I+G ++LL      +L+S    
Sbjct: 308 VRAERY-----------SSLKSRFIADISHEIRTPMNGILGMSELLAEK---NLDSTSKY 353

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL-NEVKQS-IATKM-HEN 665
           YV+ IS+    L+ L+NDILD++ ++AG++ +   TI + D++ + VK + IA +M HE+
Sbjct: 354 YVKTISSCGATLMALINDILDMSKIEAGLLDIREDTIRVQDVVKSTVKNALIAHRMKHES 413

Query: 666 N-IRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
           N I++++     DG     V D  R+ Q+   +L+N++ F+  G   I+ +    GD   
Sbjct: 414 NKIKLEIALEFVDGVPEKIVGDGFRIQQVLINLLTNSLKFTDAGFIKIVVSCIKKGDVKP 473

Query: 719 ---------------------------------FI-FSVKNNGSSIPEDMCKSVFNRFVS 744
                                            +I  SV++ G  + +D  K  F  F  
Sbjct: 474 RARPRARPRATAISCVEEGDSKPRVESGARAKRYIRVSVQDTGCGMTQDSAKEAFTAFKQ 533

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              R    G GLGLSI      L GG +  SS+    TT+   + +K
Sbjct: 534 VHSRTDVGGTGLGLSICRQLCGLMGGEIVCSSTLGVGTTVTFTVEAK 580


>gi|298247623|ref|ZP_06971428.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550282|gb|EFH84148.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 775

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 116/235 (49%), Gaps = 5/235 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K++F+   S+EL++PLT +     L +         + +  +  +  S  
Sbjct: 529 NSARKELEQRKDAFISMASHELKTPLTALKMQAQLARKRLERQSPHEAATALSRVEGSIQ 588

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ ++LD++ + AG ++     + L+ LL+EV  ++      + I   V+    L 
Sbjct: 589 QLERLIGELLDVSKIQAGRLEYLQEIVDLDTLLHEVTDTMQQISTTHTI---VVRGATLC 645

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S   D+ RL Q+F  ++SNA+ +S    TV +  +         V+++G  IP++    +
Sbjct: 646 SLEGDKDRLGQVFINLISNAIKYSPGAETVEIDLSASPEAATIRVRDHGQGIPQEQRDKI 705

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF  VS  ++    G+G+GL IV   +  HGG +++ S     +T +  +P K
Sbjct: 706 FERFYRVSGPNQKAIPGLGMGLYIVAEIVRHHGGTITVESEVGKGSTFSVTLPLK 760


>gi|294667725|ref|ZP_06732937.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602565|gb|EFF46004.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 769

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 94  EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 151 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLRLSL 210

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 211 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 270

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 271 GIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 330

Query: 785 NCRIP 789
              IP
Sbjct: 331 WFEIP 335


>gi|289627984|ref|ZP_06460938.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646452|ref|ZP_06477795.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298485210|ref|ZP_07003303.1| Sensory box histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160198|gb|EFI01226.1| Sensory box histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330866577|gb|EGH01286.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 595

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  ++++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPETREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E +     K  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 QNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|259047883|ref|ZP_05738284.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
 gi|259035560|gb|EEW36815.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
          Length = 618

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 123/236 (52%), Gaps = 14/236 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K D  + +FV +VS+ELR+PLT+I  +T+ L     G+  +K+   +++  I   +  ++
Sbjct: 374 KIDRERRNFVSNVSHELRTPLTSIKSYTEALVD---GAWENKEIAPEFLNVIETETDRMM 430

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-----ATKMHENNIRIKV-ISDG 675
            ++ D+L+L+ +D   ++L+   + +N+L+  +         + +  E N RI   I+  
Sbjct: 431 RMITDLLNLSRMDQNRLELDKEFVNMNELVKHIVNRFDMVLQSDQYREKNYRILTDITQR 490

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L   + D+ ++ Q+   I++NA+ +S  G  +I++    + D I SV + G  +P    
Sbjct: 491 NLWVEI-DQDKMTQVLDNIINNAIKYSPDGGRIIVRLMETHTDLIVSVSDEGLGVPRKDI 549

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A      G GLGL+I +  + LHGG + ++S +   +T    +P
Sbjct: 550 PHLFDRFYRVDKARSRAMGGSGLGLAISKEVVQLHGGKIWVNSIENKGSTFFISLP 605


>gi|212716133|ref|ZP_03324261.1| hypothetical protein BIFCAT_01048 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661500|gb|EEB22075.1| hypothetical protein BIFCAT_01048 [Bifidobacterium catenulatum DSM
           16992]
          Length = 344

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 117/235 (49%), Gaps = 15/235 (6%)

Query: 554 ALT--EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ALT  E  E L+ AD+++   V +VS+ELR+P++ +    + +    +    S     +E
Sbjct: 101 ALTFNEMAEELQHADQMRRDMVANVSHELRTPVSALQAMVENMADGVVEPTPSN----LE 156

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRI 669
            I   +  L +L+  +LDL+ ++AG   L        D L+E  +   IA   H ++I +
Sbjct: 157 SILNQTYRLSDLIAFLLDLSRMEAGAASLQIEMFNFADFLDETVEPLEIADAGHAHDIEM 216

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNG 727
            V  D ++     D+ RL Q+F+ I++NA+  S+  + V+++A   +D G  + +V N G
Sbjct: 217 HVPDDIEME---GDQDRLRQLFTNIIANALKHSADNTKVLIEAHENKDFGTIVTNVVNFG 273

Query: 728 SSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           S IP +    +F RFV        +  G GLGLSI      LHGG V +     G
Sbjct: 274 SQIPPEARSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGSVRVVDDPRG 328


>gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1200

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 131/261 (50%), Gaps = 15/261 (5%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+E+++   P  + + T  ++T     E A+ E  +    A+  K+ F+ ++S+E+R+P+
Sbjct: 648 VVEFTVDNQPK-RMVGTHKDITRHKSNEVAMLEAKQDAESANLYKSEFLANMSHEIRTPM 706

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG   +L+ ++  SL  +Q  Y++    S+  LL ++NDILD + ++AG ++L    
Sbjct: 707 NAIIG---MLQLAQRTSLTPQQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVG 763

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L+ +L+      A K  +  + + + +    G  +  D  RL Q+   +LSNA+ F+ 
Sbjct: 764 FPLDKVLDHALDLNALKAQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQ 823

Query: 704 KGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
            G   +     D G+        F V++ G  I ++   S+F+ F        R+  G G
Sbjct: 824 SGEIEL--GCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTG 881

Query: 756 LGLSIVESFINLHGGHVSISS 776
           LGLSI +  +++ GG + + S
Sbjct: 882 LGLSISKHLVSMMGGKMQVQS 902


>gi|108762962|ref|YP_628459.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466842|gb|ABF92027.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 642

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 143/309 (46%), Gaps = 12/309 (3%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRLSPGTHIRNIAATCSRYYNESDGW 497
           T D ++EGV V   + R+   N  F  +W  TEE  +        + A     + ES   
Sbjct: 288 TFDSIAEGVIVVDLNKRVTAFNKRFLDIWGLTEEMMVDRDAERVLVRAAGGVKHPES--- 344

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALT 556
              + I   F+   +    T+ELL   +LE   +P      ++  V     V AER A  
Sbjct: 345 -FTSRIRERFEPSEEVDVETVELLDGRILERKSLPQRMGGAIIGRVWSYREVTAERQAEA 403

Query: 557 EKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           E+   LR+A E   +++ F+   ++EL++PLT +     +L+       +   +++V+  
Sbjct: 404 ERERLLREAQEAIRVRDDFLSIAAHELKTPLTPLKLHLQMLRQHG-AEGDGASARHVDKS 462

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
               + L  LVND+LD + +  G + L +  +VL +L ++V   +  ++   + R++  +
Sbjct: 463 LMQVSRLTGLVNDLLDTSRIQEGRLTLKHGPVVLQELAHDVVSEM--RLSSAHHRVEYEA 520

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  + D  RL Q+   ++ NA  +S  G TV ++ AR++     SV++ G  IP D
Sbjct: 521 PEAPLVVLGDADRLAQVLVNLMENAFKYSPSGGTVRVRVAREDRHAHVSVQDEGIGIPRD 580

Query: 734 MCKSVFNRF 742
             + +F RF
Sbjct: 581 QQEHLFERF 589


>gi|331270145|ref|YP_004396637.1| sensory transduction histidine kinase [Clostridium botulinum
            BKT015925]
 gi|329126695|gb|AEB76640.1| sensory transduction histidine kinase [Clostridium botulinum
            BKT015925]
          Length = 1675

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----TSKLGSLNSKQSQYVEYIS 614
            NE++R  +E++  F  ++S+ELR+PL  I G   +LK    +  L S   K  +Y+  + 
Sbjct: 1407 NESIR-YEEMRTEFFANISHELRTPLNVIFGGYQMLKLMLESENLQS-KPKIDKYMGTMK 1464

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +   L+ L+N+++D+  +D+G  ++N   + + + +  +  S+A  +    I +   + 
Sbjct: 1465 QNCYRLVRLINNLIDITKIDSGFFEVNLINVDIINTIESITLSVAQYIESKGINLVFDTF 1524

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +      D  ++ +I   +LSNA+ F++ G  + +    +  + + SVK++G  IP++ 
Sbjct: 1525 VEEKIIACDVDKIERIILNLLSNAIKFTNPGGNIAVTMYEEKNNIVISVKDDGIGIPDEK 1584

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F+RF  V  +    R G G+GLS+V+S + LH G + + S
Sbjct: 1585 QSIIFDRFIQVDKSLSRNREGSGIGLSLVKSIVELHKGKIYLKS 1628


>gi|164688824|ref|ZP_02212852.1| hypothetical protein CLOBAR_02471 [Clostridium bartlettii DSM
           16795]
 gi|164602300|gb|EDQ95765.1| hypothetical protein CLOBAR_02471 [Clostridium bartlettii DSM
           16795]
          Length = 533

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 139/274 (50%), Gaps = 14/274 (5%)

Query: 526 LEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++Y  +P+ +     +  + +   +  E AL E+ E +R        F  ++S+ELR+P+
Sbjct: 239 IQYKFLPIIDEDGKAIKRIGILTDITKEVALEEEKEKIRL------DFFANISHELRTPV 292

Query: 585 TNIIGFTDLLKTSKLGSLNSKQ----SQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
             I+    +LK  KL +L+ +     S Y+  +  ++  L+ L+N+++D   +D+  +++
Sbjct: 293 NLILSSIQVLKL-KLSTLDKENYNYFSNYINIMQRNTFRLVKLINNLIDSTKIDSKSIEI 351

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +     +   + +   S+   +   N+ +   +D +      D   + +I   +LSNA+ 
Sbjct: 352 HPINSDIISFIEDTCSSVLDFVKSKNMNLIFDTDIEEEVIGFDPSYIERIMLNLLSNAIK 411

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           F+ K   + +  + +  D +  VK+ G  IPE+   ++F+RF  V +  + +R G G+GL
Sbjct: 412 FNKKDGNIFVNVSVNEKDVVVEVKDEGPGIPEEKIPNIFDRFEQVRSKMKSEREGTGIGL 471

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            IV++ ++LH G + ++S ++   +I   +P K+
Sbjct: 472 YIVKALVDLHNGTIRVNSEEKDGCSIIFTLPRKK 505


>gi|51244735|ref|YP_064619.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875772|emb|CAG35612.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1041

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  I+GF  ++  S   SL +   +++     S+  LL ++ND+LD++
Sbjct: 450 FLANMSHEIRTPMNAILGFLAIVLESS--SLPADLRKHIVTAHGSAESLLVIINDVLDVS 507

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
             D+G M+L +S   L   + +  Q++     E  + I +  D  L   F+ D  RL Q+
Sbjct: 508 KFDSGRMELVFSVFHLPRTIGKALQTLYMPAQEKELNIHLNYDEDLPYCFLGDSVRLRQV 567

Query: 691 FSKILSNAMDFSSKGS-TVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
              +++NA+ F+ +GS T+ +K      D  +F+V + G  I  +    +F  F      
Sbjct: 568 IINLVANAIKFTEEGSITIEVKGTSGEDDLLLFTVVDTGIGIRPEQVARIFEPFTQADDS 627

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             R   G GLGL+I +  ++L GG + + S     ++ N  +P
Sbjct: 628 STRNIGGTGLGLAICKEIVDLMGGRIWVESEKGKGSSFNFMVP 670


>gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1235

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 14/232 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA  +   +K+ F+ ++S+E+R+P+  ++G T LL  ++L   ++KQ  +V+ I 
Sbjct: 561 LVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTEL---DTKQKDFVQAIR 617

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++NDILD + ++A  ++L      L + L  +   +A +     I +  I D
Sbjct: 618 TSANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVD 677

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFI--FSVKNN 726
             +  ++  D  RL Q+   ++SN + F+  G  V L+ +R      N   I  + V++ 
Sbjct: 678 RNVPRYLRGDPGRLRQVLLNLMSNGIKFTPAGE-VTLRVSRPPNYDINAPLILRYEVQDT 736

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  IP +    +F  F        R+  G GLGL I +  +++ GG + + S
Sbjct: 737 GIGIPPESHGRLFEAFSQVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLES 788


>gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 916

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTD----LNATQRDHLTTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  +L   R            + + G  IPE    
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHS 504


>gi|229085933|ref|ZP_04218157.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44]
 gi|228697369|gb|EEL50130.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44]
          Length = 458

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ DE++  FV +VS+E +SPL++I GF+  L++  +     +Q  Y++ I   S  
Sbjct: 230 KSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENV--TEEEQKHYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      L   + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEETVLQVKEFNLQKQIKDVVFMLEWKWREKDIAVEF--DVPNMN 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q+++ + +N++ F+ +G T+   A         SV ++G  + ++    +F
Sbjct: 346 ITGDENLLHQVWANLFTNSIKFTDQGGTIEFAAKELENSVEISVSDSGIGMEQEEVNRIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV   + LH G +S+ S     TT    IP
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVHKIVELHHGIISVESKKGEGTTFRIEIP 457


>gi|227513409|ref|ZP_03943458.1| sensor kinase protein [Lactobacillus buchneri ATCC 11577]
 gi|227083282|gb|EEI18594.1| sensor kinase protein [Lactobacillus buchneri ATCC 11577]
          Length = 468

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 34/293 (11%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTDSVRAERA 554
           GW   ++           L  T    S S LEY +++P+P +            +  ++ 
Sbjct: 181 GWYFISSTAKRLTQPISQLSQTARDQSKSELEYETLLPVPKS-----------PMEVKQL 229

Query: 555 LTEKNEALRK---ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYV 610
            T  NE L      ++ + +F+ + ++ELR+P+  I G   L++  + G  + +   + +
Sbjct: 230 TTSFNELLTSINYKNQQEKTFISNAAHELRTPIAAIRGHIQLVQ--RHGRDHPEIVDRSI 287

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNI 667
           ++I+  S  +  LVND+L L+  D G +KL+Y  I L  LLNE    ++++  +    NI
Sbjct: 288 QFINNESARMQTLVNDLLALSRADRGDVKLDY--IDLTSLLNETVEEQRAVLKQTINVNI 345

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             K +         A+   + QI S +L NA  +S   S + +  ++    +  SV+N G
Sbjct: 346 PTKTV-------VYANADNVQQILSALLDNAGKYSPADSQITVALSQHGSQYSLSVQNTG 398

Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SIP++    +F RF     AH  Q  G GLGLSIV+    L+  H+ I+ +D
Sbjct: 399 PSIPDNQKDQIFERFYRGDQAHNHQVSGTGLGLSIVKQLAELN--HIQITVTD 449


>gi|224068380|ref|XP_002302732.1| ethylene receptor 1 [Populus trichocarpa]
 gi|222844458|gb|EEE82005.1| ethylene receptor 1 [Populus trichocarpa]
          Length = 636

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 38/270 (14%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL+ A          +N F+  +++E+R+P+  II  + LL  +  
Sbjct: 315 ESMRARDQLMEQNVALKSARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L ++Q   +E +  SS +L  L ND+LDL+ ++ G + L+  T  L++L  EV   I 
Sbjct: 373 -GLTTEQRAMIETVLKSSNLLAVLTNDVLDLSRLEDGSLDLDLKTFNLHELFREVVGLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG--STVILKAARD- 715
                  + + +I    L +  V D +RL Q    ++ NA+ F+ +G  S V+  A  D 
Sbjct: 432 PIASVKKLSMTLIMAPDLPACAVGDEKRLTQTILNVVGNAVKFTKEGYVSIVVSVAKPDS 491

Query: 716 --------------NGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVG 755
                         +G F     VK++G  + P+D+   +F +F +    G  R   G G
Sbjct: 492 LRDWQPPEFYPMTSDGHFYLRVQVKDSGCGVLPQDV-PHLFTKF-AQPQSGSSRSNGGAG 549

Query: 756 LGLSIVESFINLHGGHVSISSS--DEGVTT 783
           LGL+I + F+ L  GH+ I S   D+G  T
Sbjct: 550 LGLAICKRFVTLMKGHIWIESEGLDKGTVT 579


>gi|301309055|ref|ZP_07215000.1| two-component sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833081|gb|EFK63706.1| two-component sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 571

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 115/216 (53%), Gaps = 1/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ +++G++N +Q    E I  SS  LL
Sbjct: 344 FKELDSAKTTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAESIKESSNRLL 403

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            + +++L +  V+ G ++LN       +L+    ++   +    N  I+V    K+    
Sbjct: 404 EITSELLKMTQVETGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLF 463

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +++  + + +LSNA+ ++ +   +I+ A + +      V++ G  I     +S+F+R
Sbjct: 464 VDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDPRYHQSIFDR 523

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +       + +G GLGL+I + F+  HGG +S+ S+
Sbjct: 524 YF-RVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSA 558


>gi|294627247|ref|ZP_06705834.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598486|gb|EFF42636.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 769

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 94  EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 151 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLRLSL 210

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 211 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 270

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 271 GIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 330

Query: 785 NCRIP 789
              IP
Sbjct: 331 WFEIP 335


>gi|284167539|ref|YP_003405817.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284017194|gb|ADB63144.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 683

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 127/250 (50%), Gaps = 12/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L + N  L++++     F    S++L+ PL  +  +  LL+      L+
Sbjct: 434 DITERKAYERELEQTNAQLKRSNRELKRFAHAASHDLQEPLRMVSSYLQLLEQRYGDDLD 493

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +  ++++E+    +  +  +V+ +L+ + V     + ++ T+    +L +  +++   + 
Sbjct: 494 ADATEFIEFAVDGADRMRAMVDALLEYSQV--STRENDFETVDCEAVLEQATENLQMAIE 551

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFS 722
           E   R   I+  +L +   D ++L+Q+F  +L NA+ ++     TV + A R +G+++FS
Sbjct: 552 E---REASITSDELPTVSGDERQLIQLFQNLLDNAITYAGDAPPTVHVSAERGDGEWLFS 608

Query: 723 VKNNGSSI-PE--DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           V++NG  I PE  D   +VFNR  +    G   G G+GL+I +  + +H G + + S   
Sbjct: 609 VRDNGIGIDPEETDDIFAVFNRLHAPDEYG---GTGIGLAICKRIVTIHDGRIWVESEPG 665

Query: 780 GVTTINCRIP 789
             TT    IP
Sbjct: 666 EGTTFFFTIP 675


>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1437

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 35/244 (14%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A + K+ F+ ++S+E+R+P+  +IG T LL  +    L+S+Q  Y   + +S+  LL +
Sbjct: 694 EATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDT---DLDSEQQHYARTVRSSAESLLTV 750

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +NDILD + ++AG + +      L  +L +    +A K  E  + +    D  + S V  
Sbjct: 751 INDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNVPSMVRG 810

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------------------ 718
           D  RL QI   ++ NA+ F+  G  V +K +R   D                        
Sbjct: 811 DSGRLRQILMNLVGNAVKFTEHGE-VEIKVSRMVNDECENPNAETQENSHDLYRSSFTTQ 869

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 FSV++ G  IPED   S+F  F        R+  G GLGL+I      + GG  
Sbjct: 870 HSCLMHFSVRDTGIGIPEDKQDSLFESFSQVDASTTRKFGGTGLGLAISRQLAEIMGGTA 929

Query: 773 SISS 776
            + S
Sbjct: 930 GLES 933


>gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
 gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
          Length = 888

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQ 608
           R    LT   +A  +A   K+ F+ ++S+E+R+PL  IIGF +L +  S L ++ S    
Sbjct: 508 RKTNDLTNAQQAAEQATIAKSQFLANMSHEIRTPLNAIIGFAELAQDESNLMTIQS---- 563

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ IS+SS  LL LVND+LD + ++AG ++L+ +   L +L   ++    T+     + 
Sbjct: 564 HLKGISSSSEALLGLVNDVLDYSKLEAGKLELHRAPFSLQELAKRLRSIFETQARARGLS 623

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKN 725
            ++  D       V+D  RL QI   + SNA+ F+  G   +     +  +   +  VK+
Sbjct: 624 FRIDVDCPANKDIVSDETRLQQILINLCSNAIKFTRHGDIHVQMQVLEEQETQLMLVVKD 683

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + E     +F++F        R   G GLGLSI  +   L  G V + S     + 
Sbjct: 684 TGIGMTESERARIFDQFTQADSSITRHYGGTGLGLSITMTLTELLDGQVMVESEQGVGSQ 743

Query: 784 INCRIP 789
              R+P
Sbjct: 744 FTIRLP 749


>gi|320451219|ref|YP_004203315.1| sensor histidine kinase [Thermus scotoductus SA-01]
 gi|320151388|gb|ADW22766.1| sensor histidine kinase [Thermus scotoductus SA-01]
          Length = 468

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 16/228 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL      +++A   +  F+Q  S+ELR+P+T I+G    L       L   Q + +E 
Sbjct: 231 RALNGMLSRMQQAFLAQTRFLQDASHELRTPITAILGHVGFLLRRT--PLTEAQRESLEV 288

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  +  LV+D+L+L+    G  ++  + + + DLL EVK+  A K  E  I ++  
Sbjct: 289 VKREAERMGKLVSDLLELSQT--GSWRMEPAPVRIQDLLEEVKEEFA-KSFEGEIEVEAS 345

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSI 730
            +     +V  D  RL Q+ + +LSNA+     G+  I   A D G+  +  V+++G  I
Sbjct: 346 PE----LWVQGDPDRLHQVLANLLSNAI---KAGARHIWLRAFDLGEKVVVRVEDDGEGI 398

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P++    +F RF  V  A   +R G GLGL+IV++ +  HGG + + S
Sbjct: 399 PKEHLPHLFERFYRVDKARDRERGGSGLGLAIVKAILEAHGGEIWVES 446


>gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 584

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 158/355 (44%), Gaps = 33/355 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           + ++ +G+ +   +G+I L NPA   ++  EE R    + I  +     R++   + W+ 
Sbjct: 255 LKNMKDGILLVDENGKISLINPAAAGMFGIEETRAIGASLIEAV-----RHHTIVELWER 309

Query: 500 FAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLP----NAQTMLTFVNVTDSVRAERA 554
                T   ++ +   G +E+L +   L+  + PL     NA T+L F ++T   R ER 
Sbjct: 310 -----TRHSEQPQD--GEVEVLPEHRFLQVVLTPLGKETGNA-TLLVFHDLTRERRVERV 361

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
             +              FV +VS+ELR+PL ++    + L+   L    + Q +++  + 
Sbjct: 362 RRD--------------FVSNVSHELRTPLASLKALVETLQEGALEDPPAAQ-RFLRQME 406

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  +V ++L+L+ +++G++ L    +   ++L    + +  +     + ++V   
Sbjct: 407 IEIDNLTQMVRELLELSRIESGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCP 466

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD +R+ Q+   +  NA+ F+  G  + L   ++     F V++ G  IP + 
Sbjct: 467 ESLPEVFADAERVEQVLVNLTHNAVKFTPPGGEITLGVKQEGQAICFWVRDTGVGIPPED 526

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F RF          G GLGLSI    +  HGG +   S  +  +T    +P
Sbjct: 527 LERIFERFYKTDRSRSGEGTGLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLP 581


>gi|312141824|ref|YP_004009160.1| two component system sensor kinase [Rhodococcus equi 103S]
 gi|311891163|emb|CBH50482.1| putative two component system sensor kinase [Rhodococcus equi 103S]
          Length = 480

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 121/230 (52%), Gaps = 13/230 (5%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++AD  +  FV  V +ELR+PL  ++   ++L+     S+    ++    +S  +  L
Sbjct: 241 AAKEADARR--FVADVFHELRTPLAALVAVAEVLE-EDADSMAPDTARAARIVSRGTERL 297

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L  D+++++  D G   L    +  +DL+  V++S+AT+   +  R+   +DG +   
Sbjct: 298 SRLTEDVIEISRFDNGRADL---VLEPHDLVEVVRESLATRGFGSRARLG--ADGAVPCR 352

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V DR+R+  +   +++NA        TV ++   D  D + +V ++G+ IP ++   +F 
Sbjct: 353 V-DRRRIDIVVGNLVANAFAHGRPPVTVAVRT--DGDDAVITVTDHGAPIPAEVRAHLFE 409

Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  ++  RG+  G G+GL++ E  + LHGG +S++S   G  T   R+P
Sbjct: 410 RFYKADESRGRTDGSGIGLALAEENVTLHGGTISVTSGSTG-NTFTVRLP 458


>gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 916

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT L LKT     LN+ Q  ++  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTD----LNATQRDHLTTIERSANNLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + + I +    + 
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + ++ NA+ F+  G+  +L   R            + + G  IPE    
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQS 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 463 RLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHS 504


>gi|260770406|ref|ZP_05879339.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii CIP 102972]
 gi|260615744|gb|EEX40930.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii CIP 102972]
          Length = 1203

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 127/255 (49%), Gaps = 8/255 (3%)

Query: 539 MLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +LT VN ++     ER L +     +KA   +  F+  +S+ELR+P+  ++G  ++LK  
Sbjct: 607 ILTVVNDISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEMLKIR 666

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +    N      +  + +S+  L  LVNDILD + ++A  ++L+     L   + E+ + 
Sbjct: 667 E---TNEDTRLILNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGELLRV 723

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             T   E ++   V  + G++ + + D  RL QI + +LSNA+ F+  G  V +      
Sbjct: 724 HCTAAREKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFTQSG-FVSVDIDVTE 782

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            D + ++ ++G  +  +  K+VF+ FV       RR  G GLGL+IV   + +  G ++I
Sbjct: 783 RDMVMNISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKGDITI 842

Query: 775 SSSDEGVTTINCRIP 789
            S     T+I   IP
Sbjct: 843 DSEQGKGTSIQVTIP 857


>gi|240138708|ref|YP_002963180.1| putative two-component system regulator: response regulator
           receiver (N-terminal) and histidine kinase (C-terminal)
           [Methylobacterium extorquens AM1]
 gi|240008677|gb|ACS39903.1| putative two-component system regulator: response regulator
           receiver (N-terminal) and histidine kinase (C-terminal)
           [Methylobacterium extorquens AM1]
          Length = 606

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 139/292 (47%), Gaps = 16/292 (5%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSF 572
           L G L +  D+V+ Y  +   N       V  T + +RA R L  +   LR+A+ +K   
Sbjct: 312 LAGRLSVAFDNVILYERLQRANVTLEQRVVERTAELIRANRRLDMQRSDLRRANSLKTEI 371

Query: 573 VQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQ-----YVEYISASSTILLNL 623
           +  ++++L++PL+ I+G     TDL+   +  +  ++++Q      VE+I AS+T L+++
Sbjct: 372 LGTIAHDLKNPLSVILGRSEMLTDLIGLDQGDASGAEKAQAAMLTQVEHIRASATRLIDM 431

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++ ++  A  DA  + L    + L  L  EV ++           + +   G L +   D
Sbjct: 432 IDSLMADALNDALDITLRREPVDLAGLAREVCEANRPLAESKGQSLVMDLAGPL-TLCGD 490

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF 742
            +RL +    ++SNA+ +S  G  + +    + GD + +V + G  + PED  + +F R+
Sbjct: 491 AERLREALDNLVSNAIKYSYPGGAIAVSVREEAGDLVCAVADQGPGLSPEDAGR-LFGRY 549

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI-NCRIPSK 791
             +S    G     GLGLSIV+    LHGG     S   G   +   R P +
Sbjct: 550 QRLSAKPTGGEGSTGLGLSIVKRIAELHGGRAEAFSDGPGQGAVFAMRFPKE 601


>gi|220930742|ref|YP_002507651.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
 gi|220001070|gb|ACL77671.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
          Length = 617

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 133/258 (51%), Gaps = 10/258 (3%)

Query: 542 FVNVTDSVRAERALT----EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LK 595
            +N+TD    E A+T    + +E L++ D++K  F+ +VS+ELR+PL  +I    L  LK
Sbjct: 330 LLNLTDKAAEEAAVTRYSSQTSEKLKEWDKLKTDFLCNVSHELRTPLNLMISSLKLSSLK 389

Query: 596 TSK-LGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            S+  G L++    ++   ++ +   L  ++N+I+D+  +DAG ++LN S   + D++ E
Sbjct: 390 ISQNHGVLDTALMHKHFHIMNQNCFRLTRIINNIIDITKIDAGSLELNLSNNNIVDIVEE 449

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              S+A+ + +  I +   +D +      D  ++ +I   ++SNA+ F++ G  + +  A
Sbjct: 450 TVLSVASHIKDKEITLIFDTDVEEKFLACDPDQIQRILLNLISNAVKFNNDGREIYVSIA 509

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                   SVK+NG  I  +    +F RF  V  +   Q  G G+GL+I    + LH G 
Sbjct: 510 DSIDSVKISVKDNGIGISLENQPLIFERFIQVDKSLTRQHEGSGMGLTITRYLVELHKGT 569

Query: 772 VSISSSDEGVTTINCRIP 789
           +++ S     +T    +P
Sbjct: 570 IALESEPNIGSTFTITLP 587


>gi|332141178|ref|YP_004426916.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551200|gb|AEA97918.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1111

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 21/225 (9%)

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
           ++S+E+R+P+  IIGF+DL+    LG +L  +Q  ++  I+ S+  LL+L+NDILD A +
Sbjct: 541 NMSHEIRTPMNAIIGFSDLM----LGEALRDEQKSHLTTINRSARSLLHLLNDILDSAKL 596

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV---ISDGKLGSFVADRQRLL 688
           D G + L+Y   ++ + L+ V  +  +  K  + ++ + V   ++DG  G  V +R R  
Sbjct: 597 DKGKLDLDYRDFLIREELDLVVSTFWLEAKRKKVDLVLNVDASVADGYRG--VPERMR-- 652

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           Q+ + ++ NA+ F+ +G   I  A R  G+ + F V + G  + +    +VF+ F S A 
Sbjct: 653 QVLNNLIGNAVKFTHEGKVEI--AVRSEGELVYFDVSDTGIGMTKAQLDNVFDPF-SQAD 709

Query: 748 RGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               R   G GLG +I +  + L GG++  +S +   TT   R+P
Sbjct: 710 ASMSRKYGGTGLGTTISKQLVELMGGNICATSEEGKGTTFTFRLP 754


>gi|315181980|gb|ADT88893.1| PAS/PAC sensor hybrid histidine kinase [Vibrio furnissii NCTC
           11218]
          Length = 1190

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 56/343 (16%)

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---------SVL---------- 526
           TC+  Y +  G D  +AI T+  + +K+LQ  ++  SD          +L          
Sbjct: 596 TCNSQYYQVFGLDRASAIGTTPQEVKKNLQEAVKFESDYQQVIRTGEPILVDRTLHVAGS 655

Query: 527 EYSII----PLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           E SI     P  +A       +  +++V+D     R L E+   L +A + K +F+  +S
Sbjct: 656 ELSIYHWIEPYKDAAGHCLGVICGWIDVSD----RRDLIEQ---LTQASKAKTTFLATMS 708

Query: 578 YELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           +E+R+P+  IIG  ++ +K S  G  +    + V Y SA +  L  L+ DILD+  +++G
Sbjct: 709 HEIRTPMNAIIGLLEIAIKKSHQGHFDVPALE-VAYDSAHN--LQVLIGDILDIVRIESG 765

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKIL 695
            + +    + L DL+  + +       +  I++ V  D  +   V  D  RL QI S +L
Sbjct: 766 HISIAPQRVNLRDLVESITRVFDGLARQKYIQLDVHIDPTITQDVYVDPTRLKQILSNLL 825

Query: 696 SNAMDFSSKGSTVI-----------LKAARDNGD----FIFSVKNNGSSIPEDMCKSVFN 740
           SNA+ F+ +G   +                  G     + F VK+ G+ I E+    +F 
Sbjct: 826 SNAIKFTDQGGVTVTVTNHGPSETTFTEPEQQGSIAERYSFVVKDTGTGISEEAQPRLFA 885

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            FV       R+G GLGLSIV+S  N+ GG +++  S+ GV T
Sbjct: 886 PFVQVHSDVDRQGTGLGLSIVQSLCNMMGGTIAL-CSEVGVGT 927


>gi|295690250|ref|YP_003593943.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432153|gb|ADG11325.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 622

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 9/241 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +  E  + A+E K+ F+  VS+E+R+PL  I+G   +L  S   +LN KQ + V  
Sbjct: 231 RQLQDATERAQSANEAKSRFLATVSHEMRTPLNAILGLGQILARS---ALNKKQREQVLE 287

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++  L  +++D+LDL  +D G ++L      L  L   +            +R+ + 
Sbjct: 288 MKGAARRLRMMIDDVLDLCQLDDGELELKPRPFHLTALAQSLDNLHRPTAEVRGLRLTMQ 347

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSI 730
            +  LG + + D  RL Q+ S ++ NA+ F+ +G     +  A D  D    V + G  +
Sbjct: 348 LEPGLGEARLGDVDRLRQVISVLIDNALKFTQEGGVDCRIHGAGD--DLRIEVSDTGDGV 405

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F  F  + ++ +    G+GLGL++ +  +   GG +S SS     +T   RI
Sbjct: 406 AAEKMAVIFEHFSQIDDSTKRAAGGIGLGLALCQGLVAKMGGDMSASSQPGQGSTFTLRI 465

Query: 789 P 789
           P
Sbjct: 466 P 466


>gi|229011817|ref|ZP_04168998.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
 gi|229133605|ref|ZP_04262432.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
 gi|229170278|ref|ZP_04297957.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|228613201|gb|EEK70347.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|228650005|gb|EEL06013.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
 gi|228749448|gb|EEL99292.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
          Length = 312

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L  + I + +LL ++      ++ E NI  +     +    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSAPIDIVELLGQLTVQFRIQLQEANIECRPSFPSQKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + + A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAITYGNDGDHIDITAYESNNMITIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V  +      G GLGL+I +S + LH G + + S D+  T     +P K
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTTFTVKLLPYK 311


>gi|56900932|gb|AAW31759.1| ethylene receptor [Hevea brasiliensis]
          Length = 744

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 123/263 (46%), Gaps = 32/263 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ +  
Sbjct: 315 ESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+  T  L  +  EV   I 
Sbjct: 373 -GLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDLGTFNLRAVFREVLNLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNG 717
                  + + +     L  + + D +RL+Q    ++ NA+ FS +G+  I    AR   
Sbjct: 432 PIASVKKLPVTLNLAPDLPEYAIGDEKRLMQTILNVVGNAVKFSKEGNISITAFVARPES 491

Query: 718 -------DFI-----------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
                  DF              VK+ G  I       +F +F  N     R   G GLG
Sbjct: 492 LRDLRFPDFFPVPSDDHFYLRVQVKDEGLGINLQDIPKLFTKFAQNQSLATRNSGGSGLG 551

Query: 758 LSIVESFINLHGGHVSISSSDEG 780
           L+I + F+NL  GH+ I S   G
Sbjct: 552 LAICKRFVNLMEGHIWIESEGLG 574


>gi|315282987|ref|ZP_07871270.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
 gi|313613358|gb|EFR87219.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
          Length = 565

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +   
Sbjct: 304 AILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-ID 362

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  +
Sbjct: 363 GVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISN 422

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAAR 714
                 EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   
Sbjct: 423 FDVLAKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTI 482

Query: 715 DNGD--FIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHG 769
           D  +   + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H 
Sbjct: 483 DEAESNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHN 542

Query: 770 GHVSISS 776
           G +S+ S
Sbjct: 543 GKISVES 549


>gi|297545596|ref|YP_003677898.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843371|gb|ADH61887.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 568

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 132/270 (48%), Gaps = 14/270 (5%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + VL  +I PL   Q +  +V V   +      TE++    K D ++  FV +VS+ELR
Sbjct: 309 GNKVLTVNIAPLKGNQQIEGYVYVLHDI------TEQH----KLDTMRKEFVANVSHELR 358

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I  + + L  S + +  SK+  +++ I + +  +  LV D+L L+ +D+    L 
Sbjct: 359 TPIATIKSYVETLLYSDVDAEYSKK--FLKIIDSETDRMTRLVKDLLLLSKMDSEDNNLK 416

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +    LND++ E    ++ +  + N ++ V           DR ++ Q+   +++NA+ +
Sbjct: 417 FEQKNLNDIVVEAINRLSIEAQKKNQKLIVDLQETPRYVYIDRDKMEQVIVNLVTNAIKY 476

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           + +   + +    D       V++NG  IP++    +F RF  V  A   +  G GLGLS
Sbjct: 477 TPENGMIKIMTEYDESFASLIVEDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLS 536

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IV+  + LH G V+I S     T +  ++P
Sbjct: 537 IVKQIVELHKGEVNIESEVGKGTIVRVKLP 566


>gi|291613794|ref|YP_003523951.1| multi-sensor signal transduction histidine kinase [Sideroxydans
            lithotrophicus ES-1]
 gi|291583906|gb|ADE11564.1| multi-sensor signal transduction histidine kinase [Sideroxydans
            lithotrophicus ES-1]
          Length = 1095

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 17/287 (5%)

Query: 507  FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            F D++KS+ G   +  D      +  L  A+  +  +N       ER + E+   L  A+
Sbjct: 819  FSDDKKSVIGIFGISRD------VTELKQAEDRIMALNRD----LERRVAERTAQLEVAN 868

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +   +F   VS++LR+PL  I GF+ +L+    G L+ +  + ++ +  ++  +  L++D
Sbjct: 869  KELEAFSYSVSHDLRTPLRAIDGFSHILQEDYAGKLDDEGKRLLKVVRDNANRMGLLIDD 928

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            IL  +   AG +++++S I +  L +EV   +   +    + + +   G + S   DR  
Sbjct: 929  ILKFSR--AGRIEISFSEIDMEKLAHEVFDELRLAIAGGGLEMDI---GHIPSARGDRAM 983

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            + Q+F  +LSNA+ FS       ++     G  + I+ VK+NG+         +F  F  
Sbjct: 984  MHQVFVNLLSNAIKFSRNREPARIEVGATTGSDETIYHVKDNGAGFDMQYVDKLFGVFQR 1043

Query: 745  NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 +  G G+GL+IV+  I  HGG V          TI   +P+K
Sbjct: 1044 LHSMEEFEGTGIGLAIVKRIITRHGGRVWAEGKINEGATIYFALPAK 1090


>gi|229165941|ref|ZP_04293706.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
 gi|228617494|gb|EEK74554.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
          Length = 883

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 127/259 (49%), Gaps = 31/259 (11%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   + ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I 
Sbjct: 469 LEEKASEILRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--- 671
           +S   LL L+NDILDL+ V+AG + + +    ++D+        A  MH+N + I     
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDM--------AANMHQNFLHIAAQKN 580

Query: 672 ----ISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----------KAAR 714
               I D  +    F  D +R+ QI   +LSNA  F+ KGS  +            +   
Sbjct: 581 VEFTIEDSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDPIETTNLSNEMQS 640

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            + D+I  SVK+ G  I  +  + +F  F        R+  G GLGLSI + F  L GG 
Sbjct: 641 ISNDWITISVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGW 700

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++ S+    +T    IP+
Sbjct: 701 ITLESNVGEGSTFTVYIPN 719


>gi|313499779|gb|ADR61145.1| Virulence sensor protein bvgS [Pseudomonas putida BIRD-1]
          Length = 1210

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 126/245 (51%), Gaps = 15/245 (6%)

Query: 557 EKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEY 612
           E  +A ++AD+    K++F+  +S+E+R+P+  +IG  +L +K +  G ++      +E 
Sbjct: 696 ELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVDRSA---LEL 752

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
              S+  LL L+ DILD+  +++G + L    + L  L+  V +    +  +  + ++V 
Sbjct: 753 AHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKGLALEVQ 812

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
           I+       + D  R  Q+ S ++SNA+ F+  G   I     D+G          V+++
Sbjct: 813 IAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRICVRLLDDGTSTPAVLELEVRDS 872

Query: 727 GSSIPEDMCKSVFNRFV-SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D  + +FN F+ +N H +G R G GLGL+I  +   + GG +S+ S ++  T +
Sbjct: 873 GIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMMGGSLSMKSLEDVGTQV 932

Query: 785 NCRIP 789
             ++P
Sbjct: 933 RLKMP 937


>gi|118476035|ref|YP_893186.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118415260|gb|ABK83679.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 340

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 535 NAQTML------TFVNVTDSVRAERALTEKNE-ALRKADEIKNSFVQHVSYELRSPLTNI 587
           N QT L      +F N+  S+    A  EK     ++++E +   +  +S+++R+PLT+I
Sbjct: 71  NLQTRLFTSNDQSFHNIVFSINELIAELEKVRIKAKRSEESRKQLLSSISHDIRTPLTSI 130

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG+ D LK     S   KQ +Y++ +   S  L +LV++I ++A +DA    L    +  
Sbjct: 131 IGYIDALKDGVATSEIEKQ-EYLKILYMKSNNLKHLVDEIFNMAKLDANEFPLKEEKLDF 189

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++  EV      ++ ++NI+++V+        +AD   L++I   ++ NA+ +   G  
Sbjct: 190 SEVTREVLIEFLPEISKHNIKLQVLMPESTCPIIADHLSLMRIIGNLMKNAIYYGKDGKI 249

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFI 765
           + ++    +  +   + + G  IP+   ++VF R      +      G GLGLSI ++ +
Sbjct: 250 IGVELLETDAAYELLIWDKGPGIPKHDLQNVFERMYRSEQSRNSSFGGSGLGLSISKALV 309

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             +GGH+ + S     TT    IP
Sbjct: 310 ERNGGHIWVESIPWERTTFGFSIP 333


>gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1397

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 123/246 (50%), Gaps = 14/246 (5%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +NV++ +R  + L +      +A+E K+ F+  +S+E+R+P+  +IG  D+L+ +   SL
Sbjct: 686 INVSERIRILKDLEQARHEAEQANEAKSIFLAAMSHEIRTPMNGVIGMADVLQQT---SL 742

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q + V+ I  S+  LL ++ DILD + ++AG +++  + + +  ++ +    + +  
Sbjct: 743 SGYQMEMVDLIRESAFALLEIIEDILDFSKIEAGRLEIEQAPMSVEKVVEKACAMLESLA 802

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS--------KGSTVILKAA 713
               + + +  D  +   V  D  RL Q+   + +NA+ FSS            ++++  
Sbjct: 803 ARKAVELTLFLDPAIPDEVLGDALRLRQVLVNLANNAIKFSSGLQEPGRVSVRALLVEHD 862

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           +D     F + +NG  + E++   +F  F        RR  G GLGL+I    + L GG 
Sbjct: 863 QDTVTVEFEITDNGIGMNEEVQSRLFTSFTQGDTSTTRRYGGTGLGLAITHHLVELMGGS 922

Query: 772 VSISSS 777
           + + S+
Sbjct: 923 IQVRSA 928


>gi|300868783|ref|ZP_07113392.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300333219|emb|CBN58584.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 680

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 133/256 (51%), Gaps = 31/256 (12%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+++K+ F++++S+ELR+PL  IIGF   ++         ++ ++V+    ++  LLN++
Sbjct: 413 ANQLKDEFLRNISHELRTPLNGIIGFLQFVQDGDCDD-RDEEMEFVQRAYDAAIHLLNII 471

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD+A +++G + +   TI L  ++ E       ++ +  + + ++ D K    V AD
Sbjct: 472 NDILDIAKIESGTLSMMLETINLTQVIEEAVDLQVVEVEQKGLEL-ILPDLKEPIMVYAD 530

Query: 684 RQRLLQIFSKILSNAMDFSSKG---------STVILKAARDNGDFIF------------- 721
             +L Q+F  +LSNA+ F+  G         S ++   A  NG+ ++             
Sbjct: 531 PDKLKQVFLNVLSNAIKFTDSGKITISIRLESVLLNNGASYNGNAVYNMAQVTGTKDWVV 590

Query: 722 -SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS- 777
            ++++ G  I ++    +F  FV       R+  G GLGL+I  + + L  G +S+ S+ 
Sbjct: 591 VTIEDTGIGIDQEQQDKLFQPFVMADGSTTRKYGGNGLGLAISRNLMQLMAGTISLYSAG 650

Query: 778 -DEGVTTINCRIPSKE 792
            ++G TT+   +P+K+
Sbjct: 651 INQG-TTLTIALPAKQ 665


>gi|261415582|ref|YP_003249265.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372038|gb|ACX74783.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326511|gb|ADL25712.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
            subsp. succinogenes S85]
          Length = 1503

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 127/237 (53%), Gaps = 18/237 (7%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQY 609
            ERAL   N A R     K +F+ ++S+++R+P+  IIGFT L        +++K+  + Y
Sbjct: 973  ERALQMANSASRA----KTTFLNNMSHDIRTPMNAIIGFTGLAAEH----IDNKEQVADY 1024

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +  I  SS  LL L+ND+LD++ +++G M +      L+D+++ +K  + + +     + 
Sbjct: 1025 LSKIGQSSEHLLALINDVLDMSRIESGKMNIANRPERLSDVVHMLKGIVLSDVRSRQQQF 1084

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSV 723
             V  +      +  D+ RL Q+   ++SNA+ ++ K   +      L A    G + F V
Sbjct: 1085 FVELENVHNEMIYCDKLRLNQVLLNVVSNAIKYTPKNGLITMNVKELPAETGYGVYEFLV 1144

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            K+NG  + E   K +F+ F  V+++     +G GLG+SI ++ I++ GG + +SS +
Sbjct: 1145 KDNGIGMSEAFLKQIFDPFTRVNSSTVSGIQGTGLGMSITKNIIDMMGGTIKVSSEE 1201


>gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
 gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
          Length = 1682

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 12/220 (5%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A   K +F+ ++S+E+R+P+  +IG T L+  +    L  +Q  Y++ I  SS  LL ++
Sbjct: 932  AARAKANFLANMSHEIRTPMNAVIGMTHLVLNT---DLTRQQRDYLKKIQGSSQHLLGII 988

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVA 682
            NDILDL+ ++AG M + +    L+ +L  V   I+ K     + + +I  GK    S V 
Sbjct: 989  NDILDLSKIEAGKMAVEHIEFDLDTVLENVTGLISEKATGKGLEL-IIDVGKTVPRSLVG 1047

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            D  RL Q+     +NA+ F+ +GS VI     + A  +    FSV + G  I  +    +
Sbjct: 1048 DPLRLGQVLINYANNAVKFTERGSIVIRCDLAETAERDVVLRFSVTDTGIGIEAEQIPRL 1107

Query: 739  FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F  F    +   R+  G GLGL+I     ++ GG   + S
Sbjct: 1108 FQTFEQADNSTTRKYGGTGLGLAISRELAHMMGGEAGVDS 1147


>gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1364

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 15/244 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +
Sbjct: 675 PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSL 734

Query: 663 HENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
               + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 735 SAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    + L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852

Query: 773 SISS 776
            + S
Sbjct: 853 EVES 856


>gi|109899128|ref|YP_662383.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109701409|gb|ABG41329.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 720

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 135/262 (51%), Gaps = 37/262 (14%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q      ++ D++ A +    + EA+  A + K+ F+  +S+ELR+P+  + G  +L   
Sbjct: 203 QITFALASLKDALSASK--KAQAEAI-DASKAKSEFLASMSHELRTPMNGLFGMMELAID 259

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +       K  +Y++    +   LL L+ND+LDL+ ++AG +++  +++ L  L+++V  
Sbjct: 260 NP-----HKSGEYLKKAKNAGRQLLVLINDVLDLSKIEAGKLRIERTSVDLLQLMDDV-- 312

Query: 657 SIATKMHENNIRIKVIS-----DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
              T +   N R+K ++        L ++ V D  R+ QI   +LSNA+ F+ +G TV L
Sbjct: 313 ---TSVQSANCRLKKLAFDYQKQTNLPAYIVGDPTRIAQILHNLLSNAIKFTQQG-TVTL 368

Query: 711 KAARDNGDFI--------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLS 759
           +     G F+          V++ G  IP +  +++FN+F   A +   R   G GLGLS
Sbjct: 369 RI----GVFVTEKRHWLTIDVQDTGMGIPPEKTRTIFNKF-EQADQSTTRIHGGTGLGLS 423

Query: 760 IVESFINLHGGHVSISSS-DEG 780
           I +   +L GG +++ S  D+G
Sbjct: 424 IAKQLTDLMGGKLTVQSKVDKG 445


>gi|330969982|gb|EGH70048.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 535

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 7/183 (3%)

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +LN +Q Q +  +  +   LL ++NDILD+A ++AG M+L ++      LL+E+ +    
Sbjct: 8   ALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTP 67

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +  E  +R  V     L G  + D  R+ QI   ++ NA+ F+S G   V +    D+ D
Sbjct: 68  QAQEKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGGVDVTVSREDDHAD 127

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                FSV++ G  IP D+   +F+ F        RR  G GLGLS+V       GG + 
Sbjct: 128 TCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIG 187

Query: 774 ISS 776
           + S
Sbjct: 188 VES 190


>gi|329132024|gb|AEB77973.1| GacS [Pseudomonas sp. K94.41]
 gi|329132030|gb|AEB77976.1| GacS [Pseudomonas protegens]
 gi|329132042|gb|AEB77982.1| GacS [Pseudomonas sp. S8-62]
          Length = 203

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEEEHEDSVQLRISIQDTGIGLSNQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  I
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLI 203


>gi|311893921|dbj|BAJ26329.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1412

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 14/241 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L E+   L  A   K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y
Sbjct: 836  QARQELEERAHQLSLASTYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTAKQVEY 895

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M L+   + L  LL+  + +      + N+  
Sbjct: 896  AGIIHSAGSDLLQLINDILDLSKVEAGKMDLSPEPVALRSLLDYAEATFKPLTGQKNLAF 955

Query: 670  KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST----------VILKAARDNGD 718
             V +   +    V D  RL Q+   +LSNA+ F+ +G             I +  R  G 
Sbjct: 956  TVRTSPDVPERLVTDDYRLRQVLRNLLSNAVKFTEQGRVELRIGLAPQDRIPEGVRRGGP 1015

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + F V + G  I     +SVF  F        R+  G GLGLSI      L GG ++  
Sbjct: 1016 VLAFQVSDTGIGIAPQHLESVFGAFQQADGTTSRKYGGTGLGLSISREIAYLLGGAITAE 1075

Query: 776  S 776
            S
Sbjct: 1076 S 1076


>gi|189909957|ref|YP_001961512.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774633|gb|ABZ92934.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
          Length = 912

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 125/234 (53%), Gaps = 10/234 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L KA+ +K+ F+ ++S+E+R+P+  ++G   LL+ +   +++ +Q  Y++    S   LL
Sbjct: 526 LEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEET---NVDIEQKDYLDNAKKSVLSLL 582

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---ISDGKLG 678
            ++NDILD++ ++   +++  +   +  L  +++    + + + N+++ +   I D  L 
Sbjct: 583 TIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDKNLKLNLDFTIEDTNLH 642

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
             V D  RL Q+ + ++SNA+ F+  G   +      + +FI F V + G  I E+  K 
Sbjct: 643 ILV-DENRLRQVLNNLISNALKFTPSGIITLAVKLDPSRNFIEFCVHDTGIGISEENIKR 701

Query: 738 VFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RFV   +A   +  G GLGL I +  +NL GG + + S     +T    IP
Sbjct: 702 LFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILNIGSTFKFTIP 755


>gi|119509382|ref|ZP_01628531.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119465996|gb|EAW46884.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 658

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/471 (23%), Positives = 205/471 (43%), Gaps = 31/471 (6%)

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N+ F+++W+I  + + ++    +   F ++  K PE      +   I  +  SS+   ++
Sbjct: 196 NQKFIDMWQIPESLILSHKC-PQFKAFFQNKLKDPE-----AFSRLICEI--SSQCDFES 247

Query: 392 WH---LPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           ++   L +G+T       +  G    G +W   ++T   + E     L + +  T+   +
Sbjct: 248 YYILELKDGRTFAHQSKPHYLGDKIVGRVWSIWDITQTQETEATLR-LNEARFRTLAETT 306

Query: 445 EGVAVFGPDGRIKLSNPAFRSL--WKTEE--NRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           E       + R+   NPA   L  +K EE  N       I++      R+ N +  ++  
Sbjct: 307 EANIFLLQNTRLCYINPAVERLTGYKKEELLNDFDLRRLIKSREHRQVRHQNAAANFEYQ 366

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              +   D   + L   +  L D +L++   P+     ++T +++TD    E  L +  E
Sbjct: 367 EMNLLKKDGTERWLACAVAKL-DGMLDFGGKPV----ELITGIDITDYKNVESELNQALE 421

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTI 619
             ++  E++  F+  V ++ R+PL NI+ F++ LLK         K    +++I  +   
Sbjct: 422 QAKQLSELRARFLAMVCHQFRTPL-NIVSFSNSLLKQQVDKHTEQKIQPLLDHIEKAIEQ 480

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRIKVISDGKLG 678
           +  +++D L  A  +    K+N+    L DL+N     +A   M  +   I  +S     
Sbjct: 481 ISQMLDDTLFFAKAETA--KINFEPQPL-DLVNLCDILVAQMHMSMSQKPINFVSQFYCL 537

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D + L  I   +L NA+ +S     V    A +NG  IF VK+ G  IP    + +
Sbjct: 538 MACVDPKLLEPILKNLLENAIKYSPSNMRVDFMLACENGQVIFQVKDKGIGIPYKDQQRL 597

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F   ++     G GLGLSI+++ ++LHGG VS+ S     TT    +P
Sbjct: 598 FEPFYRGSNVDNIPGTGLGLSIIKTLVDLHGGQVSVESEVAVGTTFTVMLP 648


>gi|58583559|ref|YP_202575.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428153|gb|AAW77190.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 619

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 164/372 (44%), Gaps = 31/372 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + E + +   D RI L NPAF  L+  EE     G  +  +       + ++      A 
Sbjct: 249 VREPIVLLDADQRIVLHNPAFAELYGLEER----GNELMALEDVGEGVWRDAQIHQRLAD 304

Query: 503 IIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAE 552
           ++        ++ E++   G L  +   ++    +PLP+       ++T  +++    A+
Sbjct: 305 VLLRGRELWDYEHEQRGADGVLRTM---LINARRMPLPDTTDEDVVLMTVSDISLQKTAQ 361

Query: 553 RALTEKNEALR-KADEIKN------SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             + E N  +  K +++        +F   VS++LR+PL ++ GF+D L      + + K
Sbjct: 362 MRIQELNRQMEGKVEQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEK 421

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y+E IS+S+  + +L++D+L  + +  G ++L   ++ +  L+ E +  + + +   
Sbjct: 422 SRHYMEVISSSARRMASLIDDLLVYSRLGRGALRLQ--SVDMQSLVAETRAILDSNVQSE 479

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIF 721
           N   +V      L   VAD   + Q++  +L NA+ +S+K       +      +G   F
Sbjct: 480 NTGHRVEWHIAPLPVLVADENMMRQLWMNLLGNAVKYSAKREVAKVEVTYTPMADGGHQF 539

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780
           SV++NG+    +    +F  F       +  G G+GL+ V   +  HGG V      DEG
Sbjct: 540 SVRDNGAGFDMEYSAKLFGVFQRLHKASEYAGTGIGLASVRRVLTRHGGRVWAEGLVDEG 599

Query: 781 VTTINCRIPSKE 792
            T      P+ E
Sbjct: 600 ATFYFVLPPALE 611


>gi|15893855|ref|NP_347204.1| histidine kinase [Clostridium acetobutylicum ATCC 824]
 gi|15023432|gb|AAK78544.1|AE007571_10 Histidine kinase (HAMP, HisKA and HATPase domains) [Clostridium
           acetobutylicum ATCC 824]
          Length = 499

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 145/279 (51%), Gaps = 18/279 (6%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-LTEKNEALRKADEIKN 570
           +S+   L  +S   L+Y I+ +   +      N+ D++ +  + L ++ E  R+A++ KN
Sbjct: 224 ESVSNGLVEISKGNLDYRIMLMGEDE----LKNLADNINSMASELQKRIEKEREAEKTKN 279

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             + +VS++LR+PLT++ G+  LLK  K    N  Q  ++E     S  L NL+ND+ + 
Sbjct: 280 DLITNVSHDLRTPLTSVKGYLLLLKDKKYRDSNEFQ-DFIEIAYNKSEKLENLINDLFEY 338

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFV-ADRQRLL 688
             +   +++LN  +I L++LL ++ + +     ENN  I K I++  +  FV  D  +++
Sbjct: 339 TKLSNRVIELNKVSICLDELLEQLVEELYVICKENNTEIEKEITEKNI--FVKVDGDKMV 396

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           ++F  +L NA+ +S K   + LK        I +V+N    I     K +FNRF     R
Sbjct: 397 RVFENLLMNAIRYSKKPGKIKLKVEDQKAYVIVTVENECEHINNQELKKIFNRFY---RR 453

Query: 749 GQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + R     G GLGL+I +S + LH G +   S +E ++
Sbjct: 454 DKSRSEATGGSGLGLAIAKSIVELHNGEIWAESREETIS 492


>gi|16801705|ref|NP_471973.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
 gi|16415180|emb|CAC97870.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
          Length = 591

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 118/236 (50%), Gaps = 10/236 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E NI++ V  +  +  
Sbjct: 416 LHRLIMDILALSRIEQNPVAENTEPVDVDEVIEQSSRTIFEMATEKNIQVSV-PEKTIPP 474

Query: 680 FV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            +   DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      
Sbjct: 475 IIIETDRDKLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAKDIDR 534

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VF RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 535 VFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|154244154|ref|YP_001415112.1| histidine kinase [Xanthobacter autotrophicus Py2]
 gi|154158239|gb|ABS65455.1| histidine kinase [Xanthobacter autotrophicus Py2]
          Length = 510

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 120/233 (51%), Gaps = 8/233 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LT++    R+ ++++  FV + S+ELR+PL ++ GF + L+        +++ +++  
Sbjct: 263 RDLTQQ----RRVEQMRADFVANASHELRTPLASLSGFIETLQGPARNDAPARE-RFLAI 317

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++A +  +  L++D+L L+ ++        + + L  +L  V  +++    +  + +  +
Sbjct: 318 MAAQARRMSRLIDDLLSLSRIELNAHVRPQTKVDLGGILAHVCDTLSPLARDRGVTLDQV 377

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D      + DR  L+++F  ++ NA+ + + G  + ++  R+NG  + S+++ G  IP 
Sbjct: 378 KDAVPLEVLGDRDELIRLFENLVENALKYGAPGKRIEVRLFRENGTAVVSIRDFGPGIPP 437

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           +    +  RF  V  A    + G GLGL+IV+  +  H G + I S   EG T
Sbjct: 438 EHLPRLTERFYRVDVAASRDQGGTGLGLAIVKHIVARHRGRLGIDSVLGEGAT 490


>gi|186682169|ref|YP_001865365.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464621|gb|ACC80422.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 595

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 6/219 (2%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+  +S+ELRSPL  I+G+  LL+T KL    +K +  +  I  ++ +   L+ D+
Sbjct: 220 LKDEFLAVLSHELRSPLNPILGWAKLLQTRKLD--EAKTAYALATIERNAKLQSQLMEDL 277

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ +    + L  S++ L+ ++     ++       +I +K   +  +G  + D  RL
Sbjct: 278 LDVSRILQRKLSLKISSVDLSAVIEVALDTVRLAAQAKSIELKTEFEPNIGQVLGDPSRL 337

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +LSNA+ F+  G  V ++  R        V + G  I  +    VF+ F    +
Sbjct: 338 QQVVWNLLSNAVKFTEDGGQVEIRLERVGTQAQIQVSDTGKGINPEFLPHVFDYFRQADN 397

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVT 782
              R   G+GLGL+I    I LHGG +   S   D+G T
Sbjct: 398 TTTRTFGGLGLGLAIARQIIELHGGAIQAESEGDDKGAT 436


>gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118]
 gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118]
          Length = 1364

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 15/244 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +
Sbjct: 675 PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSL 734

Query: 663 HENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
               + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 735 SAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    + L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852

Query: 773 SISS 776
            + S
Sbjct: 853 EVES 856


>gi|303248367|ref|ZP_07334628.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490275|gb|EFL50189.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1178

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 117/235 (49%), Gaps = 11/235 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    E   +A+E K+ F+  +S+E+R+P+  I+G T++   ++L   + +Q  Y++ +
Sbjct: 663 ALCAAKEEADRANEAKSRFLASMSHEIRTPMNAILGLTEVTLRTRL---SEEQRDYIDTV 719

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             S+  LL+++NDILD + ++A  M ++     L++LL  V +++     +  + + + I
Sbjct: 720 RDSARHLLDILNDILDFSKIEACQMTVDVVDYDLHELLRRVIKTLGGAARDKGLWLTLDI 779

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
             G   +   D  ++ Q+   ++ NA+ F+  G   +  A    G          V + G
Sbjct: 780 DVGVPRNVRGDPGKVRQVLVNLVGNAVKFTEAGGVTVRAALMMPGAGGLPLLGVEVADTG 839

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
             IP +M ++VF  F    +   RR  G GLGL+I      L GG + + S+  G
Sbjct: 840 IGIPAEMREAVFESFRQADNSTARRFGGTGLGLAISRELARLMGGDIHVRSTPGG 894


>gi|228905409|ref|ZP_04069364.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
 gi|228854229|gb|EEM98932.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
          Length = 588

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L
Sbjct: 358 RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALL 416

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L+ +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++
Sbjct: 417 QLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKI 474

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V 
Sbjct: 475 TQVLYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVD 533

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A   Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 534 KARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|297567355|ref|YP_003686327.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
 gi|296851804|gb|ADH64819.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
          Length = 384

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 120/253 (47%), Gaps = 16/253 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++ T    AE AL +    LR+ ++ +  FV   ++ELR+PLT I G  +LL        
Sbjct: 133 LDTTQRRLAEEALRQSEARLREINQAQQRFVADAAHELRAPLTAIQGNLELLYRYPEMPP 192

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--T 660
             +    ++ +  +   L  LV D+L LA  DAG  +L   +I L+ +L E  +S    +
Sbjct: 193 QDRMESVIQALQEARR-LGRLVADMLALARGDAG-HRLKRESIELDRVLLEAFESTCHLS 250

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + H     ++ +        V DR  L Q+   +L NA+ ++  G  V L  +R  G   
Sbjct: 251 QQHRLTHELEPVR------LVGDRDYLKQLALILLDNALKYTPPGGQVHLALSRQEGHAE 304

Query: 721 FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
             V + GS I P+D+   VF+RF   A + +RR   G GLGLSI +  +  HGG + + S
Sbjct: 305 LQVSDTGSGIAPQDL-PHVFDRFY-RADQSRRRDPGGSGLGLSIAKWIVEQHGGEIWLES 362

Query: 777 SDEGVTTINCRIP 789
                T    R+P
Sbjct: 363 EPGQGTRAVVRLP 375


>gi|153855864|ref|ZP_01996839.1| hypothetical protein DORLON_02861 [Dorea longicatena DSM 13814]
 gi|149751832|gb|EDM61763.1| hypothetical protein DORLON_02861 [Dorea longicatena DSM 13814]
          Length = 676

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 113/215 (52%), Gaps = 7/215 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K+  +K   V +VS++L++PLT II + +LLK  +      +Q +Y++ +   S  L  L
Sbjct: 446 KSQRMKTELVTNVSHDLKTPLTAIITYVNLLKIEQDPE---RQKEYIDVLDRKSLRLKAL 502

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFV 681
           + D+ +++   +  + LN + I + +L  +VK  +  K+ E N+  R+ +  D  + +  
Sbjct: 503 IEDLFEISKASSKSVNLNIANIDIVNLFKQVKLEMEEKITEANLDFRLDIPEDKVIVAL- 561

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D Q+  +IF  ++ NA  ++   + V +K A ++GD +F +KN  ++      + +  R
Sbjct: 562 -DGQKTYRIFENLIGNAAKYAMPHTRVYVKIAAEDGDAVFQMKNVSANELTFNPEEITER 620

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           FV         G GLGL+IV+SF+ +  G   I +
Sbjct: 621 FVRGDSSRNTEGSGLGLAIVKSFVEIQKGKFWIET 655


>gi|220927705|ref|YP_002504614.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219998033|gb|ACL74634.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 488

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 117/217 (53%), Gaps = 7/217 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L K + ++   + ++S++LR+PLT I G+ ++++   L   N+ ++  V+ I   +  L 
Sbjct: 258 LSKVEGLRKELIANISHDLRTPLTMITGYGEVMR--DLPGENTPEN--VQIIIDEAKRLT 313

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVNDILD++ +++G +KLN  T  + + +  + Q       ++  R++  SD  +    
Sbjct: 314 TLVNDILDISQLESGTLKLNLDTFNITESIRNILQRYNKLTEQDGYRLEFKSDKDIW-VN 372

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  ++ Q+   +++NA+ ++    TV +  +  +      + + G  I E+M   +++R
Sbjct: 373 ADTVKMSQVIYNLINNAITYTGPDRTVTIIQSSSSDSVKVEITDTGEGISEEMLPLIWDR 432

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  +  AH+    G GLGLSIV++ +++HG    + S
Sbjct: 433 YYKIDKAHKRAAIGTGLGLSIVKTILDMHGARYGVGS 469


>gi|167645202|ref|YP_001682865.1| histidine kinase [Caulobacter sp. K31]
 gi|167347632|gb|ABZ70367.1| histidine kinase [Caulobacter sp. K31]
          Length = 287

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 12/220 (5%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLV 624
           D+ K SF++ VS+ELR+PL  +IGF+++L     G L + Q  +Y   +  S   LL LV
Sbjct: 47  DDQKRSFLRMVSHELRTPLNAVIGFSEILSCELYGPLGAPQYKEYATLVHESGLKLLRLV 106

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N I+++A ++  +  L+     L+D + +V   +  +    +I I     G +    AD 
Sbjct: 107 NQIVEIARLEGHVTDLDLGAEDLDDAIEDVILQLRAETKARDISIVAPEVGAVPCLRADG 166

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
           + L  I + +L NA+  S +G  ++++A+R +G  +   +++ G    E +  +  NR V
Sbjct: 167 RGLRTILTNLLQNAITHSPQGGRIVIEASRIDGAMVEIEIRDQG----EGVDPAELNRLV 222

Query: 744 SNAHRG------QRRGVGLGLSIVESFINLHGGHVSISSS 777
               +G         G GLGL IV+       G + + S+
Sbjct: 223 RPFEQGGSTLTRSTEGAGLGLPIVDLLTRAMDGSLRLKST 262


>gi|117923577|ref|YP_864194.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607333|gb|ABK42788.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 948

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 131/247 (53%), Gaps = 10/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+E AL   ++   KA+  K+ F+  +S+E+R+P+  I+G T+LL+ ++L ++   Q  Y
Sbjct: 416 RSEIALRIASDEALKANRAKSDFLAVMSHEIRTPMNAIMGMTELLEETELTTI---QRNY 472

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +    +S   LL L+NDILD++ V+AG M++  +   L+ ++++  Q I  +  E  +  
Sbjct: 473 LSICRSSGQNLLQLINDILDISKVEAGRMEVAVAPFHLHRIIHDANQVILFRAQEKGLNQ 532

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVK 724
            V  D  + +  + D+ R+ QI    L N++ F+  G+   L   R + +     +  V 
Sbjct: 533 IVYIDPAVPTILLGDQARIRQILINFLGNSVKFTQSGTIATLVTTRAHANKEDQLVIHVV 592

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I +   +++F  F  V ++++ Q+ G GLGL+I    + L  G VS+SS     +
Sbjct: 593 DTGIGIEQSEQEAIFKAFHQVDSSNQRQQGGTGLGLAICLKLVALMQGSVSLSSRAGKGS 652

Query: 783 TINCRIP 789
           T    +P
Sbjct: 653 TFTLTLP 659


>gi|295681482|ref|YP_003610056.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295441377|gb|ADG20545.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 682

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 14/250 (5%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P  Q   TF+     V  ERA  E    LR AD  K+ F+  +++ELR+PL  +     L
Sbjct: 277 PVHQDDYTFIGSLCDV-TERADAEAK--LRDADRRKDIFLATLAHELRNPLAPVRNAAHL 333

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN- 652
           L  S  G+ ++K+      I   +  L +L++D+LD++ +  G + L      +   L+ 
Sbjct: 334 LGHSA-GADSAKREWLRNVIERQTGHLSHLIDDLLDVSRITTGKIVLKREVFDIRLALDH 392

Query: 653 --EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
             E+    A + H + +R+ +    +   +V  D+ R+ Q FS +L NA+ ++ +G  ++
Sbjct: 393 ALEITMPAALQRHHDIVRLPL----EHPVYVHGDQARITQTFSNLLDNAIKYTDEGGRIV 448

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINL 767
           + A     +   SV + G+ I +D    VF+ FV  +  G+  R G+G+GLS+ ++   +
Sbjct: 449 VCATLVGQEVCVSVSDTGTGISDDALPHVFDLFVQGSCHGEPSRGGLGIGLSVCKTLTEM 508

Query: 768 HGGHVSISSS 777
           HGG ++  S+
Sbjct: 509 HGGTIAARSA 518


>gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60]
          Length = 1520

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 12/247 (4%)

Query: 539 MLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ML  +N  +T   +AE  L     A   A++ K++F+ ++S+ELR+PL  I+G   LL  
Sbjct: 732 MLVGINRDITRQRQAEATLQAAKLAAENANQAKSAFLANMSHELRTPLNAILGMLTLLLK 791

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S    L  +Q+ Y     A++  LL L+NDILD + ++AG M+L      L +LL ++  
Sbjct: 792 S---GLTHRQADYATKSEAAARALLRLLNDILDYSKIEAGKMELETEPFSLCNLLQDLAV 848

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILK 711
            +++   +  + +    D  L  + V D  RL Q+   +  NA+ F+ +G       +L 
Sbjct: 849 ILSSSSRQKPVEVLFDIDPSLPHWLVGDSLRLQQVLINLGGNALKFTERGEVTLFIRLLA 908

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
             +      F V++ G  I  +  +++F+ F        RR  G GLGLSI + F+ + G
Sbjct: 909 QDQQTVTLHFGVRDTGIGIAPEKQRAIFSGFSQAEASITRRFGGTGLGLSISQRFVTMMG 968

Query: 770 GHVSISS 776
           G + + S
Sbjct: 969 GTLQVES 975


>gi|257867535|ref|ZP_05647188.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257873864|ref|ZP_05653517.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257801591|gb|EEV30521.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257808028|gb|EEV36850.1| histidine kinase [Enterococcus casseliflavus EC10]
          Length = 578

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 120/234 (51%), Gaps = 7/234 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R+ ++++  FV +VS+EL++P+T++IGFT+ L         + Q+ ++E I   +  L 
Sbjct: 345 IRQLEKMQKDFVGNVSHELKTPVTSLIGFTETLLDGAKEDPETLQT-FLEIIQKDAYRLK 403

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           NL+ DI+ L+  D+   +     I  ++LL +V Q+      +  +  +   +G     +
Sbjct: 404 NLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAGKKQLTFQF--EGPEPFIL 460

Query: 682 ADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + ++ LLQ I   ++ NA+ +S  G  + L  +  +   +F V++ G  I E+  + +F 
Sbjct: 461 STKKELLQPIVKNLVENAVTYSKPGGVITLSYSEQDDQLLFQVQDQGIGIDEEDQERIFE 520

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF  V  A      G GLGL+IV+ +  L GG + + S  +  +T    +P  E
Sbjct: 521 RFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGSTFTVTLPLHE 574


>gi|298528571|ref|ZP_07015975.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512223|gb|EFI36125.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 533

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 127/253 (50%), Gaps = 17/253 (6%)

Query: 553 RALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           RA  E +EAL  A          K+ F+ ++S+E+R+PL  I+G   LL ++    L+++
Sbjct: 127 RAKKEAHEALVAAKEAAEVASRAKSEFLANMSHEIRTPLNGIVGMLQLLSST---GLDTE 183

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +Y+    +++  L  L++DILDL++++AG M +  +   ++ +   +         E 
Sbjct: 184 QEEYIRLGQSAAQRLTRLLSDILDLSSIEAGRMYIRENPFSISHVCESIHDLFIITAREK 243

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF-- 721
            I   +  D ++   V  D  R+ QI   ++ NA  F+ +GS ++ ++ A    D +   
Sbjct: 244 GIHFDISLDPQIPKKVMGDATRVSQILFNLVGNAFKFTDQGSISLDIRLAEQEQDRLLLH 303

Query: 722 -SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G+ IP D    +F  F     ++  + +G GLGL +V+  ++L  G + + S  
Sbjct: 304 ISVADTGTGIPPDKINELFQPFTQADGSYTRKYQGAGLGLVVVQRLLDLLEGRIEVDSIV 363

Query: 779 EGVTTINCRIPSK 791
              TT++  +P K
Sbjct: 364 GQGTTMHVSMPLK 376


>gi|254428255|ref|ZP_05041962.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196194424|gb|EDX89383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 699

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 19/247 (7%)

Query: 542 FVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           F  + DS+  A+  L +       A + K+ F+ ++S+E+R+P+T I+G+T+LL+    G
Sbjct: 291 FNAMVDSIHHAQTQLAQARMQAEDASQTKSQFLANISHEIRTPMTAILGYTELLRD---G 347

Query: 601 SLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           SLN+  + +Y+  I  +   LL L+ND+LDL+ ++AG +           LL+EV  S+ 
Sbjct: 348 SLNATDKRRYLTIIQHNGDALLALINDVLDLSRIEAGQLHPEQRLFSARVLLDEVIDSLQ 407

Query: 660 TKMHENNI--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKA 712
            +  E +I  RI  ++D    +   D  RL QI   ++ NA+ F+ +G   +      +A
Sbjct: 408 LRATEKDIDLRIHYLTDLP-PTVSGDAFRLRQILVNLIGNAVKFTERGRVHVGVNWDEEA 466

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
           +R N     SV++ G  I E     +F  F     +H  +  G GLGLSI         G
Sbjct: 467 SRLN----VSVEDTGIGISEGELSRIFLPFSQADASHTRRYTGTGLGLSIARQLARAQDG 522

Query: 771 HVSISSS 777
            + + S+
Sbjct: 523 DIQVFST 529


>gi|170756558|ref|YP_001779917.1| sensory transduction histidine kinase [Clostridium botulinum B1
           str. Okra]
 gi|169121770|gb|ACA45606.1| sensory transduction histidine kinase [Clostridium botulinum B1
           str. Okra]
          Length = 306

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 118/228 (51%), Gaps = 3/228 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ KN+ + ++S++LR+PLT+++GF +L++  K  + +++ + Y E     +  L N
Sbjct: 80  RQWEKQKNNLITNLSHDLRTPLTSVVGFLELIQKKKYKN-DNELNHYCEVSLNKAKELKN 138

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            V+ + +   +  G +KLN  +I L+ L+ +           + +  +V S         
Sbjct: 139 SVDQLFEFTKLSNGDVKLNICSISLHQLIEQAAIGFIPSFENSGMEYRVFSKDPGLIING 198

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   L ++F  I+SNA+ + S+G  + +   ++N   + S  N G  I E   K++F R 
Sbjct: 199 DAALLARVFENIISNAIKYGSEGKYLDIHIEKENNMAVVSFVNYGDIIEEKDVKNLFQRL 258

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   ++ G GLGL+I ++ ++LH G++ I SS E  T    R+P
Sbjct: 259 YRIEKSCDKKEGTGLGLAIAKTIVDLHNGNIDIMSSKEK-TEFKIRLP 305


>gi|313618121|gb|EFR90221.1| sensor histidine kinase ResE [Listeria innocua FSL S4-378]
          Length = 596

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 129/246 (52%), Gaps = 9/246 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +    
Sbjct: 336 ILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-IDG 394

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  + 
Sbjct: 395 VAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVIANF 454

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAARD 715
                EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   D
Sbjct: 455 DVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTID 514

Query: 716 N--GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHGG 770
               + + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H G
Sbjct: 515 ETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNG 574

Query: 771 HVSISS 776
            +S+ S
Sbjct: 575 KISVES 580


>gi|294645581|ref|ZP_06723274.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|292639026|gb|EFF57351.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
          Length = 622

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 132/250 (52%), Gaps = 17/250 (6%)

Query: 529 SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +++P+   + +   +  ++T+    E+ L +      ++D +K++F+ ++S+E+R+PL  
Sbjct: 383 ALVPMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNA 442

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ LL  ++      ++  Y   I+ +S ILL L+NDILDL+ ++AG   L Y    
Sbjct: 443 IVGFSQLLPAAETA---EEKKLYSGIINQNSDILLQLINDILDLSKIEAGT--LEYIKRP 497

Query: 647 LNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFS 702
           +N  L EV ++I   +H+  ++  + ++ D +  +     D+ R++Q+ +  L+NA  F+
Sbjct: 498 MN--LGEVCRTIYA-VHKERVKEGVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFT 554

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             G  + L   R + +    VK+ G  I  +    +F RFV      Q  G GLGLSI +
Sbjct: 555 YAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLNSFAQ--GTGLGLSICQ 611

Query: 763 SFINLHGGHV 772
             I   GG +
Sbjct: 612 MIIEKIGGEI 621


>gi|260460550|ref|ZP_05808801.1| Osmosensitive K channel His kinase sensor [Mesorhizobium
           opportunistum WSM2075]
 gi|259033655|gb|EEW34915.1| Osmosensitive K channel His kinase sensor [Mesorhizobium
           opportunistum WSM2075]
          Length = 882

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 122/265 (46%), Gaps = 10/265 (3%)

Query: 534 PNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P  Q +L  +    +V  ER    A  ++ +   +AD ++++ +  +S++L++PL  I+G
Sbjct: 603 PEQQRLLDALADQAAVAIERIQLVADVDRAKLAAEADRLRSALLTSISHDLKTPLAAIMG 662

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               L+          +++ +  +   S  L   + ++LD+  +++G M+ NY+   + D
Sbjct: 663 AAGTLREFAPALPEQDRAELLSTVLDESERLNRFIANLLDMTKIESGAMEPNYAFHYVGD 722

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++    Q     + E+   I +  D  L     D     Q    +L NA  ++  GST+ 
Sbjct: 723 IVGSALQRARKIIAEHKTEIDIPMD--LPMLKVDPVLFEQALFNLLDNAAKYAPPGSTIR 780

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLH 768
           ++   DNG  I  V + G  IP    + +F+ F     R Q R G GLGLSI   FI   
Sbjct: 781 VQGWTDNGSVILQVMDEGPGIPPGDVERIFDTFYRVRKRDQVRAGTGLGLSICRGFIEAM 840

Query: 769 GGHVSISSSDE---GVTTINCRIPS 790
           GG ++ ++  +    V TI+   P+
Sbjct: 841 GGTITAANRTDRPGAVFTISMPKPA 865


>gi|218530350|ref|YP_002421166.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium chloromethanicum CM4]
 gi|218522653|gb|ACK83238.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium chloromethanicum CM4]
          Length = 593

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 135/280 (48%), Gaps = 15/280 (5%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSF 572
           L G L +  D+V+ Y  +   N       V  T + +RA R L  +   LR+A+ +K   
Sbjct: 299 LAGRLSVAFDNVILYERLQRANVTLEQRVVERTAELIRANRRLDMQRSDLRRANSLKTEI 358

Query: 573 VQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQ-----YVEYISASSTILLNL 623
           +  ++++L++PL+ I+G     TDL+   +  +  ++++Q      VE+I AS+T L+++
Sbjct: 359 LGTIAHDLKNPLSVILGRSEMLTDLIGLDQGDASGAEKAQAAMLTQVEHIRASATRLIDM 418

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++ ++  A  DA  + L    + L  L  EV ++           + +   G L +   D
Sbjct: 419 IDSLMADAMNDALDITLRREPVDLASLAREVCEANRPLAESKGQSLVMDLAGPL-TLCGD 477

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF 742
            +RL +    ++SNA+ +S  G  + +    + GD + +V + G  + PED  + +F R+
Sbjct: 478 AERLREALDNLVSNAIKYSYPGGAIAVSVREEAGDLVCAVADQGPGLSPEDAGR-LFGRY 536

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             +S    G     GLGLSIV+    LHGG     S   G
Sbjct: 537 QRLSAKPTGGEGSTGLGLSIVKRIAELHGGRAEAFSDGPG 576


>gi|186682168|ref|YP_001865364.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186464620|gb|ACC80421.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 706

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 7/243 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL+    A  +   +K++F+   S+ELR+PL + + +  LLK  +L     +  +Y++  
Sbjct: 450 ALSHARAAAEEVSRLKSNFLASTSHELRTPLASTLNYLKLLK-ERLYEDEDELREYIDGA 508

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L+ ++ND+LD+A ++ G + L+  T+ L  LL E  Q   +        I +  
Sbjct: 509 YQSTQNLVTIINDVLDIAKIEDGRIALDLETVYLQQLLQE--QCFLSGAESRYKAIPLTL 566

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
           D ++ +  AD+ ++ Q+ + +L NA  F+ +G   +       G     SV + G  I  
Sbjct: 567 DCEIETVFADKIKVRQVMTNLLDNAFKFTDEGQIDVRAVVDSTGTMAQISVHDTGIGIEM 626

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           +  + +F+ FV      QR   G GLGL+I +  + L GG + + S   G   T+   +P
Sbjct: 627 ENSEQLFSPFVQADGSAQRSYGGTGLGLTICKRLVELMGGKIWLESPGLGQGNTVTFTLP 686

Query: 790 SKE 792
             E
Sbjct: 687 LNE 689


>gi|221134745|ref|ZP_03561048.1| two-component system sensor protein [Glaciecola sp. HTCC2999]
          Length = 876

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 123/227 (54%), Gaps = 12/227 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+  ++A E K++F+ ++S+E+R+PL  I+GF  LL+   L SLN KQ ++ +    S+ 
Sbjct: 344 NQNAQRALEAKSTFLANMSHEIRTPLNGIMGFFQLLE---LESLNKKQHEFAQNGLKSTR 400

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +L  +VNDILD + ++A  + L  S   L  ++N++   +++ ++E  + + +  D  + 
Sbjct: 401 LLSQIVNDILDYSKLEANKVTLQKSVFSLEMMINDIGSLMSSSLNEKRLELWLDIDQNMN 460

Query: 679 ---SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIP 731
              + + D  RL Q+   ++SNA+ F+ +G   I       + D+    F V ++G  I 
Sbjct: 461 MNMNILGDETRLRQVLINLVSNAIKFTDEGFVKIKLTQTALSDDHMTVKFEVSDSGIGIN 520

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           ++    +F  F        ++  G GLGL+I +S + L G  +++SS
Sbjct: 521 QEQQSRIFESFEQANMNTTKKYGGTGLGLNICQSILLLMGSSLAVSS 567


>gi|90413156|ref|ZP_01221152.1| putative sensor histidine kinase FexB [Photobacterium profundum
           3TCK]
 gi|90325847|gb|EAS42299.1| putative sensor histidine kinase FexB [Photobacterium profundum
           3TCK]
          Length = 798

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 23/253 (9%)

Query: 553 RALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+ +   A  KA   K +F+  +S+ELR+PL  I+G + +L  +    LN +Q  Y
Sbjct: 264 RDITERKQYQDAQEKASRDKTAFISTISHELRTPLNGIVGLSRMLLET---PLNDEQRGY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  L N+ NDI+D+   D   ++L    +  +D + E++   +    +  +R 
Sbjct: 321 MRTVHVSAITLGNIFNDIIDMDKSDRRRLELMPKPLDFHDFITEMENISSLMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVK 724
            +    KL +++  D  RL Q+   ++ NA  F+ +G  VIL  + +      +  F V+
Sbjct: 381 DLERLTKLPAYIEVDSTRLRQVLWNLIGNATKFTKEGG-VILSVSSEIFEHEAEITFDVE 439

Query: 725 NNGSSIPEDMCKSVFNRFVS------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS- 777
           ++G  IP      +F  +        N H     G G+GL++    + L GG + ++S  
Sbjct: 440 DSGIGIPASEVDKIFAMYYQVKQGSDNLH---AVGTGIGLAVSRQLVQLMGGDILVTSDI 496

Query: 778 DEGVT-TINCRIP 789
            EG T T+  R+P
Sbjct: 497 GEGSTFTVTIRVP 509


>gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1364

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 15/244 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +
Sbjct: 675 PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSL 734

Query: 663 HENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
               + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 735 SAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    + L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852

Query: 773 SISS 776
            + S
Sbjct: 853 EVES 856


>gi|75761473|ref|ZP_00741438.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900606|ref|YP_002449017.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228968615|ref|ZP_04129600.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|74491034|gb|EAO54285.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218544459|gb|ACK96853.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228791107|gb|EEM38724.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 613

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L
Sbjct: 383 RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALL 441

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L+ +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++
Sbjct: 442 QLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKI 499

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V 
Sbjct: 500 TQVLYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVD 558

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A   Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 559 KARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|330876334|gb|EGH10483.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 626

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 14/211 (6%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL+++N+ILD + ++A
Sbjct: 1   MSHEIRTPLNGILGFTHLLQKSEL---TPRQFDYLGTIEKSADNLLSIINEILDFSKIEA 57

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSK 693
           G + L+     L DLL +    +A   H   + +   V  D  L +   D  RL QI + 
Sbjct: 58  GKLVLDNIPFNLRDLLPDTLTILAPAAHAKQLELVSLVYRDTPL-ALSGDPLRLRQILTN 116

Query: 694 ILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           ++SNA+ F+ +G T++ +A       ++     SV++ G  +     +++F  F    N+
Sbjct: 117 LVSNAIKFTREG-TIVARAMLEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNS 175

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              Q  G GLGL I +  I   GG + + S+
Sbjct: 176 LSRQPGGTGLGLVISKRLIEQMGGEIGVDST 206


>gi|327478670|gb|AEA81980.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 992

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 13/242 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+    ++ + +K+  V  VS+ELR+PLT+I G   L+    LG  +    Q +  
Sbjct: 750 RDITER----KRIERMKSELVSIVSHELRTPLTSISGALGLIVGGALGEPSPTMLQMLTI 805

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLN---YSTIVLNDLLNEVKQSIATKMHENNIRI 669
              +S  L  LV+D+LD+  + AG M L    +S +    L  E  Q  A K H   +++
Sbjct: 806 AHQNSLRLGRLVDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAK-HGVYLQL 864

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +   +L   +AD  RL Q+ + ++SNA+ FS +G TV L A +        V++ G  
Sbjct: 865 EPLPTLQL---IADDDRLQQVLANLISNAVKFSPEGGTVSLGAQQRGAWVRIWVRDQGPG 921

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +    +F +F    ++   Q+ G GLGL+I +  I    G +   S         C 
Sbjct: 922 IAPEFHARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCE 981

Query: 788 IP 789
           +P
Sbjct: 982 LP 983


>gi|300721895|ref|YP_003711173.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
 gi|297628390|emb|CBJ88955.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
          Length = 773

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 127/253 (50%), Gaps = 27/253 (10%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSK 598
           L   NV  ++  +RA     EA+R    IK  F+ ++S+ELR+PL  +IGFT  +LKT  
Sbjct: 261 LEIQNVELTIAKKRA----QEAVR----IKTEFLANMSHELRTPLNGVIGFTRQMLKTP- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              + S+Q +Y+  I  S+  LL ++NDILD + +++  + L     +L D +NEV + +
Sbjct: 312 ---ITSQQMEYLYVIDRSANNLLKIINDILDFSRLESNKLLLEQVPFLLRDTVNEVIELL 368

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
               +  N+ +    D KL +  + D  RL QI + ++ NA+ F+ KG  T+ +K  +  
Sbjct: 369 TPAANVKNLPLHHHIDDKLPNLMIGDPIRLQQILTNLIGNAIKFTDKGGVTLDIKLRQQQ 428

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVESFINLH 768
              I   F+V + G  I  +    +F  F         H G   G GLGLSI +  +N  
Sbjct: 429 HHLIQIDFTVTDTGIGIKPEHRPILFQAFNQADASITRHYG---GTGLGLSITKRLVNEM 485

Query: 769 GGHVS-ISSSDEG 780
            G +  IS   +G
Sbjct: 486 KGEIDFISEVSKG 498


>gi|260220402|emb|CBA27903.1| hypothetical protein Csp_A04610 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 597

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 10/230 (4%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           ++K+ F+ ++S+E+R+P+  ++G  +L + S   S   +Q  Y+     S+  LL ++N+
Sbjct: 215 QVKSEFLSNMSHEIRTPMNGVLGMLELARGS---SDAQEQQHYLATAQNSANALLKILNE 271

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685
           ILD + ++A  M+L  S   L  LL E+K     +  +  +   +  D ++    V D  
Sbjct: 272 ILDYSKLEAHHMQLESSAWDLRALLEELKVVYTNRCVQKQLEFALHLDAQVPPCVVGDAL 331

Query: 686 RLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           R  QI + +L NA+ F+  G    S  + K ++     +F VK+ G  +P +   S+F  
Sbjct: 332 RTRQILTNLLENAVKFTEGGHVHLSVRVGKYSKAKDTLVFEVKDTGIGVPLNQQASIFKA 391

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        RR  G GLGLSI      L  G +++ S+    +T    +P
Sbjct: 392 FEQADASTTRRFGGTGLGLSICAELARLMQGALTVRSAPGQGSTFCLEVP 441


>gi|228920612|ref|ZP_04083957.1| hypothetical protein bthur0011_16270 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839242|gb|EEM84538.1| hypothetical protein bthur0011_16270 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 291

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 128/246 (52%), Gaps = 5/246 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +
Sbjct: 41  TNVNRMVKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEE 99

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L + V+D+L+   ++   ++L+   + +  L+ ++      ++ + 
Sbjct: 100 CEQYVSILKRKSYELKHQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIGFVPQLDDA 159

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+   + SD  L   V D   ++++F  I+ N++ +   G  + +  +    +    +KN
Sbjct: 160 NMSFYIKSDEVLYVEV-DVALIVRLFENIIGNSIMYGKDGKEIAIGISNKTMNVEVEIKN 218

Query: 726 NGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPE+    VF +F     +      G G+GL+I +S   LH G +++ S+D+  T 
Sbjct: 219 FGQCIPEEDLPYVFEKFYRSEKSRSSYTGGKGMGLAISKSIAELHQGDLTVRSNDKE-TV 277

Query: 784 INCRIP 789
              ++P
Sbjct: 278 FTVKLP 283


>gi|163746272|ref|ZP_02153630.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanibulbus
           indolifex HEL-45]
 gi|161380157|gb|EDQ04568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanibulbus
           indolifex HEL-45]
          Length = 683

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 33/271 (12%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNS 604
           TD    +RAL    +A + AD  K  F+ +VS+ELR+PLT I G    L+ S KL     
Sbjct: 407 TDVTTEKRAL----DAAKAADREKTEFLNNVSHELRTPLTVISGRASFLQHSEKLPQARR 462

Query: 605 KQS-----------------QYVEYIS-------ASSTILLNLVNDILDLATVDAGIMKL 640
            Q+                 ++ +++S        SS  +L LV D+LD   V  G M+L
Sbjct: 463 MQTALTNSPNATPDIRSSVNEFQDFVSDQAGGIAGSSKHMLRLVEDLLDWTKVARGKMEL 522

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +   I  +++   V   +        + +    D    +  A+  RL QI   ++SNA+ 
Sbjct: 523 DLQEIEASEIARSVADDLRPDAEAKGLTL-TYEDNGTATANAEPVRLRQILYNLISNAIK 581

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           F+  G+ + LK  +   +  F V + G  I E+  K VF RF  V  +   +  G+GLGL
Sbjct: 582 FTRSGN-IHLKMHQAAEEITFCVTDTGCGISEENIKRVFLRFQQVDGSMSRENGGLGLGL 640

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I E    LHGG +S+ S  +  +T    +P
Sbjct: 641 AIAEQLATLHGGGLSLESEVDVGSTFRLTLP 671


>gi|119476632|ref|ZP_01616942.1| sensory box histidine kinase/response regulator [marine gamma
           proteobacterium HTCC2143]
 gi|119449888|gb|EAW31124.1| sensory box histidine kinase/response regulator [marine gamma
           proteobacterium HTCC2143]
          Length = 848

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +++K  F+  +S+E+R+PL  ++G  +LL+ ++L   +  Q +++ Y+  S  +L++ +
Sbjct: 362 GEKLKTDFLATMSHEIRTPLNGLLGNMNLLRDTQL---SPDQDRHIGYMETSGRLLMSQI 418

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           +D+LD+A  DAG +      + ++ L+ ++  S  + +  +   +K   +G   +++ +D
Sbjct: 419 SDVLDIARYDAGKLSTKSEPMDISALIQDIIDSQRSAVSLSETALKWRWEGAPVNWINSD 478

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFN 740
             RL  +   ++ NA+ F+ +G+  +       G  ++    VK+ G  IPE++   +F+
Sbjct: 479 HDRLQHVMINLIGNAVKFTQRGTIWVTLQVEVQGASVYLHIDVKDTGRGIPEELAAHIFD 538

Query: 741 RFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV+   A+     G GLGLSIV+ F+    G + ++S     +T   ++P
Sbjct: 539 DFVTGNTAYDRDVGGTGLGLSIVKRFVAALNGTIEVTSVLGKGSTFTVKMP 589


>gi|15672378|ref|NP_266552.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723269|gb|AAK04494.1|AE006276_9 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 480

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 132/249 (53%), Gaps = 22/249 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEY 612
           +TE+++A R+    +  FV +VS+ELR+PLT++  + + L+    G++  K+  S ++  
Sbjct: 218 MTEQDKAERE----RRLFVSNVSHELRTPLTSVKAYLEALED---GAIEDKETASSFINV 270

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHE---- 664
               +  ++ +++D+L L+ +D   + LN   I     L+  +N + Q + T+ ++    
Sbjct: 271 SLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISS 330

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           N   ++  S+  +   + D  ++ Q+   I+ NA+ +S KG T+ +   +   D + S+ 
Sbjct: 331 NFTLVRKYSEQPIWVEI-DTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISIS 389

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IP+     +F+RF  V NA R  +  G GLGLSIV   + +HGG +  SS  EG 
Sbjct: 390 DQGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGK 449

Query: 782 -TTINCRIP 789
            TT +  +P
Sbjct: 450 GTTFSFTLP 458


>gi|88860280|ref|ZP_01134918.1| aerobic respiration control sensor protein arcB [Pseudoalteromonas
           tunicata D2]
 gi|88817478|gb|EAR27295.1| aerobic respiration control sensor protein arcB [Pseudoalteromonas
           tunicata D2]
          Length = 770

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 134/273 (49%), Gaps = 13/273 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E   +P  NA+    ++ +    R   +  E  +AL +A + K  F+  +S+ELR+PL 
Sbjct: 236 FEMRKVPFFNAKQ--EYIGLLGFGRDITSRKEAEQALEQAFKDKGKFIATLSHELRTPLN 293

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G T +L  +    LN+ Q  +   + +S+  L N+ NDI+DL  VD   + +   ++
Sbjct: 294 GIVGLTRMLLET---DLNANQRSWCNTVFSSAETLGNIFNDIIDLDKVDRDQLDIACESV 350

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSK 704
            ++D LN+V         + ++   V   G L  +   D  RL Q+   +++NA+ F+++
Sbjct: 351 NVSDFLNDVINFGGLIAQQKDLDFLVEQQGVLDIYAQLDPTRLRQVLWNLINNAVKFTAR 410

Query: 705 GSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           GS V L+  R+    +   +  V ++G  I ++  K +F+ +  V + + G   G G+GL
Sbjct: 411 GS-VKLRCIREYRVKDTWLVIEVIDSGIGIAQEHLKRIFDMYYKVPDINGGNALGSGIGL 469

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ ++ I   GG + + S     +     +P K
Sbjct: 470 AVTKALITAMGGKLEVFSEQSVGSRFRIEVPLK 502


>gi|149174179|ref|ZP_01852807.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148847159|gb|EDL61494.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 739

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 120/233 (51%), Gaps = 13/233 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+E+R+P+T I+GFTD+L    +  LN +++ + V  I  +   LL L+NDI
Sbjct: 344 KSEFLANMSHEIRTPMTAILGFTDIL----INDLNQTEEIEVVRTIHQNGEYLLGLINDI 399

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           LDL+ ++ G + + +     ++++N+V   +  +     I ++V  +G +   +  D  R
Sbjct: 400 LDLSKIEDGKLDVEWLDCSPHEIVNDVISLLQVRAVAKGIPLEVNFEGPVPELIHTDPAR 459

Query: 687 LLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           L QI   ++ NA+ F+  GS      ++     D     F V + G  I  +  +++F  
Sbjct: 460 LRQILINLIGNAIKFTEHGSVQLVIRLVSNQQSDQQKLHFDVFDTGIGIAAEQIENLFLP 519

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F        R+  G GLGL+I +  + L GG + +SS+    +T +  IP  E
Sbjct: 520 FTQADSSTTRQYGGTGLGLAICKRLVELLGGTIQVSSTVGKGSTFSVIIPVGE 572


>gi|91787248|ref|YP_548200.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91696473|gb|ABE43302.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1197

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 10/236 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             A  +A++ K+ ++  +S+ELR+PL +I+G+  L+      ++   + Q V  I     
Sbjct: 722 RHAADQANQAKSRYISAISHELRTPLNSILGYAQLMGEDA--AIPPHRKQAVSVIRRGGE 779

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+L+   LD+A ++AG + L    +   D ++E+      +     +  +  + G L 
Sbjct: 780 HLLSLIEGTLDIARIEAGKLTLTVKPMQFADCVHEMAGMFELQAAAKGLGFRFETAGNLP 839

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCK 736
             V AD +R+ QI   +L NA+ F+++G  +  L+ AR+       +++ G  + E    
Sbjct: 840 ELVRADEKRVRQILINLLGNAIKFTAQGQVIFRLRHAREMA--YIDIEDTGPGMSEAELA 897

Query: 737 SVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F  F   A  G       G GLGL+I +   +L GG +++ S+    +    R+
Sbjct: 898 QIFEPFARGAAAGHSAEGTPGAGLGLTIAKMLTDLMGGEMTVLSTPGQGSVFRVRL 953


>gi|319781532|ref|YP_004141008.1| osmosensitive K channel His kinase sensor [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317167420|gb|ADV10958.1| Osmosensitive K channel His kinase sensor [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 909

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 122/265 (46%), Gaps = 10/265 (3%)

Query: 534 PNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P  Q +L  +    +V  ER    A  ++ +   +AD ++++ +  +S++L++PL  I+G
Sbjct: 630 PEQQRLLDALADQAAVAIERIQLVADVDRAKLAAEADRLRSALLTSISHDLKTPLAAIMG 689

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               L+          +++ +  +   S  L   + ++LD+  +++G M+ NY+   + D
Sbjct: 690 AAGTLRDFSAALPEPDRAELLSTVLDESERLNRFIANLLDMTKIESGAMEPNYAFHYVGD 749

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++    Q     + E+ I   +  D  L     D     Q    +L NA  ++  GST+ 
Sbjct: 750 IVGSALQRARKIIGEHKIETDIPRD--LPMLKVDPVLFEQALFNLLDNAAKYAPAGSTIR 807

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLH 768
           ++   DNG  +  + + G  IP    + +F+ F     R Q R G GLGLSI   FI   
Sbjct: 808 VQGWTDNGSVLLQIMDEGPGIPPGDLERIFDTFYRVRKRDQIRAGTGLGLSICRGFIEAM 867

Query: 769 GGHVSISSSDEG---VTTINCRIPS 790
           GG ++ ++  +G   V TI    P+
Sbjct: 868 GGTITAANRTDGSGAVFTIKMPKPA 892


>gi|239908403|ref|YP_002955145.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798270|dbj|BAH77259.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 855

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 24/225 (10%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  I+G   +L  +    L++ Q+ Y+  I  S+  LL L+NDILD +
Sbjct: 453 FLANMSHEIRTPMNGILGMAQVLGQT---DLDAAQASYLRDIEDSAASLLKLINDILDFS 509

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
            ++A  ++L      L  LL+ ++ S+     E  + + V ++       + D  RL Q+
Sbjct: 510 KIEADRLELAQEPFSLRGLLSLIEASLGVLAREKGLGLSVEVAPETPDILIGDADRLRQV 569

Query: 691 FSKILSNAMDFSSKGSTVI-LKAARDNGD---------------FIFSVKNNGSSI-PED 733
              ++ NA+ F+++G  VI  + A  + D                +FSV + G  I PED
Sbjct: 570 LVNLVGNAIKFTTRGGIVISARPAEPDPDVTLPGEAETTEATREILFSVSDTGIGIRPED 629

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             + +F  F        RR  G GLGL+I      L GG +S+ S
Sbjct: 630 AGR-IFEAFTQADGSYTRRFGGTGLGLAISRRLARLMGGDISLDS 673


>gi|183219822|ref|YP_001837818.1| putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167778244|gb|ABZ96542.1| Putative sensor protein; putative membrane protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 921

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 125/234 (53%), Gaps = 10/234 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L KA+ +K+ F+ ++S+E+R+P+  ++G   LL+ +   +++ +Q  Y++    S   LL
Sbjct: 535 LEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEET---NVDIEQKDYLDNAKKSVLSLL 591

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV---ISDGKLG 678
            ++NDILD++ ++   +++  +   +  L  +++    + + + N+++ +   I D  L 
Sbjct: 592 TIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDKNLKLNLDFTIEDTNLH 651

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
             V D  RL Q+ + ++SNA+ F+  G   +      + +FI F V + G  I E+  K 
Sbjct: 652 ILV-DENRLRQVLNNLISNALKFTPSGIITLAVKLDPSRNFIEFCVHDTGIGISEENIKR 710

Query: 738 VFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F+RFV   +A   +  G GLGL I +  +NL GG + + S     +T    IP
Sbjct: 711 LFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILNIGSTFKFTIP 764


>gi|159901161|ref|YP_001547408.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894200|gb|ABX07280.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 533

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 119/237 (50%), Gaps = 11/237 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ D +K  FV + S+ELR+PL NI  +  L +  K     +K  QY+E I++ +  L 
Sbjct: 297 LKEYDRLKTQFVANASHELRTPLANIKLYARLAQQVK---AKTKLPQYLETIASEAGRLE 353

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRIKVISDGKLGS 679
            +V D+L L  +D+G+M  +   + + +LL  + Q+     +  E  +  +  +      
Sbjct: 354 AIVEDLLTLTRLDSGLMHSSPEWVDIIELLRNLAQTYRPLAEAREQRLIFQECTSNLPKL 413

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMC 735
           ++A  Q  +++   +LSNA+ F+  G TV L   R         + +V + G  I  +  
Sbjct: 414 WLAPDQ-FMRVVVNLLSNALKFTPTGGTVTLSVDRQTQAGQAGTLITVADTGPGIAPEHQ 472

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           + +F RF   ++  +  G GLGL+IV   + L GG +S++S+    +   C +P ++
Sbjct: 473 QRLFERFYRGSNPTE-SGSGLGLAIVRELLALMGGTISVASTVGQGSQFTCWLPLEQ 528


>gi|325921895|ref|ZP_08183706.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325547597|gb|EGD18640.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 718

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 10/232 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 44  EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 100

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +RI +
Sbjct: 101 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLRIGL 160

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F +++ 
Sbjct: 161 EIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQIRDT 220

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           G  I +D    +F  F        R   G GLGL+I +  I+L GG + + S
Sbjct: 221 GIGIAQDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVES 272


>gi|256376496|ref|YP_003100156.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM
           43827]
 gi|255920799|gb|ACU36310.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM
           43827]
          Length = 1433

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 13/228 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EAL  A  +K++FV ++S+E+R+PL  +IG T+LL  +    L+ +Q  Y + +  S+
Sbjct: 697 RDEAL-SASRMKSAFVANMSHEIRTPLNGVIGLTELLLDTD---LDCRQRDYAQTLQNSA 752

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGK 676
             LL ++NDILD + ++AG ++++        L+ +V   +A       + I  V+    
Sbjct: 753 DALLAVINDILDFSKIEAGKLEIDPVDFDPRALVEDVVSLLAASAQAAGLEIAAVVHPPM 812

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNG-DFIFSVKNNGSSI 730
             + V D  R+ Q+   ++SNA+ F+ KG  V+       A  ++G +  F+V + G  I
Sbjct: 813 PPTLVGDAHRVRQVLVNLVSNAIRFTPKGEVVVWVDVAPAAPGESGHEVTFTVADTGIGI 872

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P++  + +F  F  V  +   Q  G GLGL+I +  + L GG + ++S
Sbjct: 873 PDERQQHLFEAFTQVDASTTRQYGGTGLGLTISKQLVELMGGEMGLAS 920


>gi|237797951|ref|ZP_04586412.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020802|gb|EGI00859.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 595

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E K     +  E +I + +     L    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLEEAKARFEDQALERDIVLMLDIQEPLPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 PKGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|168186870|ref|ZP_02621505.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169295198|gb|EDS77331.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 658

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 3/229 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L+   ++K+ F   +S+ELR+PLT I     L K      +    ++ +  I  +  
Sbjct: 395 NNELQNISKMKDEFFNMISHELRTPLTIINSSVQLAKNVYKDEVTDTINKILMRIDQNCR 454

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+N+ILD++  +AG ++L YS   +  +   +  S+       +I +   ++ +  
Sbjct: 455 RLLKLINNILDISKAEAGFLQLEYSFFNIVSVTESIVNSVNIYAKSKDINLIFDTNEEEK 514

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D+ +  +I   +LSNA+ F+S G  + +    +       VK+ G  IP++   ++
Sbjct: 515 MIALDKDKYEKIILNLLSNAIKFTSNGKYIYVNIYAEENSVQVKVKDEGVGIPKESLNNI 574

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           F+RF  ++N+ +    G GLGLS+V++F+ L  G++ ++S  D+G   I
Sbjct: 575 FDRFIQINNSAKNTTPGTGLGLSLVKNFVELMDGNIKVNSEIDKGTEFI 623


>gi|167621587|ref|YP_001672095.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351710|gb|ABZ74436.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 1069

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 6/213 (2%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ ++S+ELR+PLT ++GF+ L +      L+     Y++    +   LL  VNDI
Sbjct: 697 VKSEFLANMSHELRTPLTAVLGFSRLAEEQP--ELSDTTRGYLKRACNAGQALLLTVNDI 754

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           LD + ++AG +++    +    L  E     AT+  E  I + +     L   V AD  R
Sbjct: 755 LDFSKLEAGQVEIAPRPMSPAKLATETLDLFATQAAEKGIALHLGGLETLPRTVRADPDR 814

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--V 743
           + QI   ++ NA+ F+  GS  +       G F+ F+V + G  +PED    +F RF  V
Sbjct: 815 VRQILLNLIGNAVKFTMVGSVRVDAIFEPLGGFLSFAVTDTGPGVPEDRADQLFQRFSQV 874

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +   +  G GLGL+I +      GG +   S
Sbjct: 875 DASSTRKHGGTGLGLAICKGLAEAMGGDIGAQS 907


>gi|325507982|gb|ADZ19618.1| Histidine kinase (HAMP, HisKA and HATPase domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 499

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 132/247 (53%), Gaps = 14/247 (5%)

Query: 544 NVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           N+ D++ +  + L ++ E  R+A++ KN  + +VS++LR+PLT++ G+  LLK  K    
Sbjct: 252 NLADNINSMASELQKRIEKEREAEKTKNDLITNVSHDLRTPLTSVKGYLLLLKDKKYRDS 311

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N  Q  ++E     S  L NL+ND+ +   +   +++LN  +I L++LL ++ + +    
Sbjct: 312 NEFQ-DFIEIAYNKSEKLENLINDLFEYTKLSNRVIELNKVSICLDELLEQLVEELYVIC 370

Query: 663 HENNIRI-KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            ENN  I K I++  +  FV  D  +++++F  +L NA+ +S K   + LK        I
Sbjct: 371 KENNTEIEKEITEKNI--FVKVDGDKMVRVFENLLMNAIRYSKKPGKIKLKVEDQKAYVI 428

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSIS 775
            +V+N    I     K +FNRF     R + R     G GLGL+I +S + LH G +   
Sbjct: 429 VTVENECEHINNQELKKIFNRFY---RRDKSRSEATGGSGLGLAIAKSIVELHNGEIWAE 485

Query: 776 SSDEGVT 782
           S +E ++
Sbjct: 486 SREETIS 492


>gi|318075901|ref|ZP_07983233.1| two-component system sensor kinase [Streptomyces sp. SA3_actF]
          Length = 567

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  AL  +   +   +E    FV  +S+ELR+PLT I   T++L+  ++ +L+      V
Sbjct: 287 AAAALERRVADMSAREEASRRFVADMSHELRTPLTAITAVTEVLE-EEIDTLDPMIEPAV 345

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             + + +  L  LV +++++   DAG  +L    +   D+ +++   I  +   + + + 
Sbjct: 346 RLVVSETRRLNTLVENLMEVTRFDAGTARLVCDDV---DIADQITACIDARAWLDAVEL- 401

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              D + G     D +RL  I + ++ NA+     GS V +    +    +  V+++G  
Sbjct: 402 ---DAERGIMARVDPRRLDVILANLIGNALKHG--GSPVRVSVRVEGPSLVIRVRDHGPG 456

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           IPED+   VF+RF  ++A R +  G GLGLSI ++  ++HGG ++ ++S EG      R+
Sbjct: 457 IPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAQANAHIHGGGITAANSPEGGAVFTLRL 516

Query: 789 P 789
           P
Sbjct: 517 P 517


>gi|300867589|ref|ZP_07112238.1| Sensor protein (fragment) [Oscillatoria sp. PCC 6506]
 gi|300334396|emb|CBN57408.1| Sensor protein (fragment) [Oscillatoria sp. PCC 6506]
          Length = 472

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 126/239 (52%), Gaps = 6/239 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK ++L+KA+E+K  F+ ++S+E R+PL +II  + +L     G L  +Q + V +I 
Sbjct: 205 LDEKADSLQKANEVKTRFLSNMSHEFRTPLNSIISLSRILLDRMDGELTLEQEKQVTFIR 264

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L +LVND+LDLA  +AG + ++ +   ++DL   ++  +   +  N+  + ++ +
Sbjct: 265 KSAECLSDLVNDLLDLAKAEAGKIVVHPNEFEISDLFGALRGMLRPLLAYNS-SVSLVFE 323

Query: 675 GKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             +G      D  ++ QI    +SN++ ++  G  + + AA      +FSV + G  I  
Sbjct: 324 EVVGCHKLYTDEGKVSQILRNFISNSLKYTEVGE-IRVSAAIAGNTVVFSVADTGIGIAV 382

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F  +  +++  + Q +G GLGL + +    L GG V ++S     +T    IP
Sbjct: 383 GDRELIFEEYTQLNSPLQTQFKGTGLGLPLAKKLAELLGGSVFLTSELGKGSTFFATIP 441


>gi|190574102|ref|YP_001971947.1| putative two component system histidine kinase/response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
 gi|190012024|emb|CAQ45646.1| putative two component system histidine kinase/response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
          Length = 377

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 129/256 (50%), Gaps = 11/256 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           Q +L+ VNV   +  +R L + +NEAL +A ++  +    ++++LR+PL+ I+  TD L 
Sbjct: 123 QVILSKVNVFIELYQQRQLLKARNEALERALKLNETMAAVLTHDLRTPLSAILLCTDKLA 182

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +L   N+   Q ++Y+ AS+  +  +V  +LD + + +G ++L  S   L D+   V 
Sbjct: 183 L-ELPEDNAGAQQTLQYLEASTLRMARMVEQLLDFSRIRSGGLRLEASACDLADVTRAVV 241

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +    + I + +  D +L     D  RL Q+ + ++ NA+   S+    +    RD
Sbjct: 242 AEAGSAHGADRIHLDLQGDTRLQG---DLDRLGQVAANLVGNALTHGSEARVQV--DGRD 296

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +  V N G  I + +   +F  F ++ H  Q +G+GLGL IV+ F+  HGG ++ +
Sbjct: 297 PRGVLLRVSNAGR-IDDALLPRLFEPFKASFH--QSKGLGLGLYIVDQFVRAHGGRIA-A 352

Query: 776 SSDEGVTTINCRIPSK 791
            ++ G       +P +
Sbjct: 353 RNEAGQVVFEAMLPRR 368


>gi|163744381|ref|ZP_02151741.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161381199|gb|EDQ05608.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 666

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 5/213 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           + +FV  V++EL +PL ++ G  ++L      ++     + +   + ++  LL LVNDI 
Sbjct: 423 RTAFVMSVNHELSTPLRSLAGSLEILHERFGDTIPKSAGELLTMATRNAERLLVLVNDIQ 482

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFV-ADRQ 685
            L  +D   + + +  + ++DLL+E   + +      ++R+K+    D    +++  D  
Sbjct: 483 TLQAIDQQQLSIQFERVAVSDLLSEAIATNSGYGANRDVRLKMRTAPDAPQDAYIRVDPV 542

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ QI S ++SNA+ ++ +G TV + A  D     F V + G  IP      +F RF   
Sbjct: 543 RMQQILSNLISNAIKYTPRGGTVKIGADVDQEKVTFYVCDAGPGIPRSAHDRMFKRFADP 602

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
            H    Q  G GLGL+I E  +   GG +S  +
Sbjct: 603 VHSRDTQAYGTGLGLAITEELVTRQGGDISFET 635


>gi|94497919|ref|ZP_01304484.1| two-component system sensor protein [Sphingomonas sp. SKA58]
 gi|94422647|gb|EAT07683.1| two-component system sensor protein [Sphingomonas sp. SKA58]
          Length = 1034

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 129/239 (53%), Gaps = 6/239 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  RA+ +L E+   L +A   K+ F+ ++S+ELR+PL +++    LL  ++ G+L ++Q
Sbjct: 347 DLTRAQASLEEQARELEQASRYKSEFLANMSHELRTPLNSLLIMARLLADNRAGNLTAEQ 406

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++ E I  S   LL L+NDILD++ ++AG + L    + +  ++ ++   +     +  
Sbjct: 407 VRHAETIETSGNDLLLLINDILDISKIEAGHVDLQTRPMRIAPMVEKLHALLEPGARQKG 466

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVK 724
           I +++ +   +   + +D  R+ QI    LSNA+ F+ KG  T+ ++ A D+    F+V 
Sbjct: 467 IALRIPAASAMPVEIESDPHRVEQILKNFLSNAIKFTDKGEVTLTVEEAGDDA-IAFTVH 525

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEG 780
           + G  IP +  ++VF  F        R+  G GLGLSI      L GG +S +S+  EG
Sbjct: 526 DTGIGIPVEQQQTVFEPFRQADGSVSRKYGGTGLGLSISRELAKLLGGEISLVSAPGEG 584


>gi|17231257|ref|NP_487805.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132899|dbj|BAB75464.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 443

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L +A  +K+ F+  +S+ELR+P+  IIGF  +L   K G+L  +Q+  VE I  +  
Sbjct: 164 NLKLLEASRLKSQFLATMSHELRTPMNAIIGFAQILSRPKFGNLTGQQADMVERILNNGK 223

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+N++LD + ++ G ++L      L  ++N V   + +      + + V  D +  
Sbjct: 224 HLLMLLNEVLDFSKLEEGRLELKPELFDLTKVINAVVMEMRSLAEAKKLSLLVQIDLQNS 283

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI-FSVKNNGSSIPEDMCK 736
             V D  R+ QI   +LSNA+ F+  GS  I    +D  G ++   VK+ G  I     K
Sbjct: 284 LLVNDPVRIKQILINLLSNAIKFTDSGSIWI--DVKDLPGSWVEIKVKDTGIGIAAKDFK 341

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F  F  V  +   +  G GLGL+I++S + +  G + + S
Sbjct: 342 YIFEAFRQVDQSITRKYPGTGLGLAIIDSLVQMMSGKIFLES 383


>gi|326405972|gb|ADZ63043.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 480

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 132/249 (53%), Gaps = 22/249 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEY 612
           +TE+++A R+    +  FV +VS+ELR+PLT++  + + L+    G++  K+  S ++  
Sbjct: 218 MTEQDKAERE----RRLFVSNVSHELRTPLTSVKAYLEALED---GAIEDKETASSFINV 270

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHE---- 664
               +  ++ +++D+L L+ +D   + LN   I     L+  +N + Q + T+ ++    
Sbjct: 271 SLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISS 330

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           N   ++  S+  +   + D  ++ Q+   I+ NA+ +S KG T+ +   +   D + S+ 
Sbjct: 331 NFTLVRKYSEQPIWVEI-DTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISIS 389

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  IP+     +F+RF  V NA R  +  G GLGLSIV   + +HGG +  SS  EG 
Sbjct: 390 DQGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGK 449

Query: 782 -TTINCRIP 789
            TT +  +P
Sbjct: 450 GTTFSFTLP 458


>gi|227893255|ref|ZP_04011060.1| possible histidine kinase [Lactobacillus ultunensis DSM 16047]
 gi|227864938|gb|EEJ72359.1| possible histidine kinase [Lactobacillus ultunensis DSM 16047]
          Length = 485

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 125/234 (53%), Gaps = 15/234 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + NE ++  ++ ++ F+   ++E+R+PLT I G  + L+   +   +  +S  +  
Sbjct: 238 KALKQSNEEVKAQEKRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKS--IAL 295

Query: 613 ISASSTILLNLVNDILDLATV-DAGIM--KLNYSTI-VLNDLLNEVKQSIATKMHENNIR 668
           +   +  L+ LVN+ LD   + +  IM  K+N++ + VL+DL +++ Q+      + N +
Sbjct: 296 MQHETKRLIRLVNENLDYEKIRNNQIMLYKVNFNAVPVLHDLRSQLMQN----AKKANDQ 351

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++V++  ++  + ADR R  QI   ++ NA+ F+  G   I+    ++G   FSV++NG 
Sbjct: 352 LQVVAPDEVEVY-ADRDRFTQIMVNLIQNAIQFTHDGKIKIISQRLEHG-AQFSVQDNGI 409

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDE 779
            + E   K +F RF        R G    GLGLSIV S +  HGG + + S  E
Sbjct: 410 GMDEKQMKFIFERFFKADPSRARLGTGESGLGLSIVSSLVKQHGGKIEVKSEPE 463


>gi|169602473|ref|XP_001794658.1| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
 gi|160706176|gb|EAT87998.2| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
          Length = 968

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 126/234 (53%), Gaps = 18/234 (7%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ ++S+E+R+P+  +IG ++LL      +L+ +Q +  E I  S+  LL ++NDI
Sbjct: 400 MKSQFLANMSHEIRTPIAGVIGMSELLSDM---NLDEEQKECAENIHRSANSLLTVINDI 456

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQ--SIATK----MHENNIRIKVISDGKLGSFV 681
           LD + V++G + +      L+ +L +V +  S A +    ++++ I+ +V  D ++   +
Sbjct: 457 LDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLVYQSTIQDEVEQDLRV---M 513

Query: 682 ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL QI + +L+N++ F+S+G    S  I +   D+    FSV + G  I E++ K 
Sbjct: 514 GDPGRLRQILTNVLTNSIKFTSEGSVKLSVSISQETNDSVTVNFSVIDTGIGIEEEVRKR 573

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F        RR  G GLGL+I ++ + L  G + + S     TT    IP
Sbjct: 574 LFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 627


>gi|32477912|ref|NP_870906.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448469|emb|CAD77984.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1122

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 129/249 (51%), Gaps = 18/249 (7%)

Query: 544 NVTDSV--RAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           N+T+ V  R ERA     L +       A + K++FV ++S+E+R+P+T I+G+ DL++ 
Sbjct: 692 NLTEMVYLRIERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTPMTAILGYADLVRD 751

Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +   Q+ +++E I  +   LL ++NDILDL+ ++AG +++N+       L+ +V+
Sbjct: 752 M----IEDPQAIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNHEKFEPARLIEDVR 807

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +  +  E  + + V   G L   + +D +RL QI   ++ NA+ F+ KG   I    R
Sbjct: 808 SIMEVRAKEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKFTQKGWVQI--RVR 865

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            N      + + G  + ++  K +F  F        R   G GLGL+I +    + GG +
Sbjct: 866 FNKLLHIDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGLAISKRLTEMLGGTI 925

Query: 773 SISSSDEGV 781
            I+SS EGV
Sbjct: 926 -IASSTEGV 933


>gi|309809785|ref|ZP_07703639.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169964|gb|EFO72003.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 612

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++ 
Sbjct: 368 QKNENEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIA-PQFLGVIQNETERMIR 426

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---IKVISDGKLGS 679
           ++ND+L+L+ +D G++K++   + LND L+ +       +  + ++   I+ I   +   
Sbjct: 427 MINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALW 486

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  +++Q+   I++NA+ +S  G  + ++  + +   I S+ + G  IP      +F
Sbjct: 487 VEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRKDLSRIF 546

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A   ++ G GLGL+I +  +  H G +   SS+   +T    IP
Sbjct: 547 DRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|309806454|ref|ZP_07700459.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167127|gb|EFO69301.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
          Length = 612

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++ 
Sbjct: 368 QKNENEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIA-PQFLGVIQNETERMIR 426

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---IKVISDGKLGS 679
           ++ND+L+L+ +D G++K++   + LND L+ +       +  + ++   I+ I   +   
Sbjct: 427 MINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALW 486

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  +++Q+   I++NA+ +S  G  + ++  + +   I S+ + G  IP      +F
Sbjct: 487 VEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRKDLSRIF 546

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A   ++ G GLGL+I +  +  H G +   SS+   +T    IP
Sbjct: 547 DRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|84625371|ref|YP_452743.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84369311|dbj|BAE70469.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 603

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 164/372 (44%), Gaps = 31/372 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + E + +   D RI L NPAF  L+  EE     G  +  +       + ++      A 
Sbjct: 233 VREPIVLLDADQRIVLHNPAFAELYGLEER----GNELMALEDVGEGVWRDAQIHQRLAD 288

Query: 503 IIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAE 552
           ++        ++ E++   G L  +   ++    +PLP+       ++T  +++    A+
Sbjct: 289 VLLRGRELWDYEHEQRGADGVLRTM---LINARRMPLPDTTDEDVVLMTVSDISLQKTAQ 345

Query: 553 RALTEKNEALR-KADEIKN------SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             + E N  +  K +++        +F   VS++LR+PL ++ GF+D L      + + K
Sbjct: 346 MRIQELNRQMEGKVEQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEK 405

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y+E IS+S+  + +L++D+L  + +  G ++L   ++ +  L+ E +  + + +   
Sbjct: 406 SRHYMEVISSSARRMASLIDDLLVYSRLGRGALRLQ--SVDMQSLVAETRAILDSNVQSE 463

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIF 721
           N   +V      L   VAD   + Q++  +L NA+ +S+K       +      +G   F
Sbjct: 464 NTGHRVEWHIAPLPVLVADENMMRQLWMNLLGNAVKYSAKREVAKVEVTYTPMADGGHQF 523

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780
           SV++NG+    +    +F  F       +  G G+GL+ V   +  HGG V      DEG
Sbjct: 524 SVRDNGAGFDMEYSAKLFGVFQRLHKASEYAGTGIGLASVRRVLTRHGGRVWAEGLVDEG 583

Query: 781 VTTINCRIPSKE 792
            T      P+ E
Sbjct: 584 ATFYFVLPPALE 595


>gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1364

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 15/244 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +
Sbjct: 675 PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSL 734

Query: 663 HENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
               + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 735 SAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    + L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852

Query: 773 SISS 776
            + S
Sbjct: 853 EVES 856


>gi|240146132|ref|ZP_04744733.1| multi-sensor hybrid histidine kinase [Roseburia intestinalis L1-82]
 gi|257201731|gb|EEV00016.1| multi-sensor hybrid histidine kinase [Roseburia intestinalis L1-82]
          Length = 452

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 22/233 (9%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLN 622
           A+E K  F+  +S+E+R+P+  IIG   ++++S    L+ ++    Y E + ++S  LL 
Sbjct: 77  ANEAKTKFLAGMSHEIRTPMNAIIGLNSMIRSS----LDDREQVLDYTEKLDSASQYLLA 132

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----KQSIATKMHENNIRIKVISDGKL 677
           L+NDILD++ +++G MKL       +   + V      Q++   +  +  R K IS+   
Sbjct: 133 LLNDILDMSRIESGSMKLAIRAFEGDKFWDNVNMLAKAQAVMAGVGYSFERRKKISE--- 189

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPED 733
             ++ D  RL QI   +++NA+ F+ KG  V +  A    D        V +NG  I +D
Sbjct: 190 -VYIGDSTRLEQIMVNLINNAVKFTPKGGNVNVSVAEQETDGRVQLTAVVSDNGIGIAKD 248

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
               VF+ F        R   G GLGLSI  ++  +  G +++ S+ EG  T+
Sbjct: 249 FLPKVFDIFTQEHEENTRVYGGSGLGLSIARNYARMMDGDITVESA-EGKGTV 300


>gi|227500015|ref|ZP_03930094.1| possible sensor histidine kinase VanSG [Anaerococcus tetradius ATCC
           35098]
 gi|227217912|gb|EEI83199.1| possible sensor histidine kinase VanSG [Anaerococcus tetradius ATCC
           35098]
          Length = 352

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L+K +   N  + +++++LR+PLT+IIG+  +L   K    N ++ +Y+  +  ++  L
Sbjct: 123 TLKKRENEDNDLITYLAHDLRTPLTSIIGYLSMLDEMK-DLPNKQREKYIRQLLETALGL 181

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +L+N   ++A ++ G   ++   I L   L ++K  +   M ENN +I + S+G +   
Sbjct: 182 EDLINQFFEIARLNNGEFSIHKEKIDLEYFLIQLKDELYPMMKENNHKINISSEGSIIVN 241

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V D  ++ +    IL NA+ +S   + + +K  +     I  + N   ++ E   +++FN
Sbjct: 242 V-DPNKMKRALENILKNAILYSYANTEIKVKIYQTYKCVILKIINKADTLEEAQIRNMFN 300

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +F  ++ A   ++ G GLGL I +  I LH G + + SS+  V  I
Sbjct: 301 KFTRLNLARNSKKVGCGLGLPIAKEIIELHEGKIEVESSNNEVIVI 346


>gi|21229958|ref|NP_635875.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766834|ref|YP_241596.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188989907|ref|YP_001901917.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21111470|gb|AAM39799.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572166|gb|AAY47576.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167731667|emb|CAP49845.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris]
          Length = 767

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+     G L+  Q   ++
Sbjct: 94  EQELLRAKQAAEAASLAKGEFLATMSHEIRTPLNGIIPMLELISR---GQLSLDQRDMLQ 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 151 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVAQLMQRTAEGKQLRLGL 210

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 211 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 270

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S      T 
Sbjct: 271 GIGIAADQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGATF 330

Query: 785 NCRIP 789
              IP
Sbjct: 331 WFEIP 335


>gi|330953684|gb|EGH53944.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas
           syringae Cit 7]
          Length = 745

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQ-SQY 609
           R +  + +A+R  DE+    V  VS++LR+P+T I     +++   S  G   S++ S  
Sbjct: 509 RQVRREQQAVRARDEL----VAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRRISTA 564

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +++ +  L+ D+LD + ++AG   +    + ++ +  E    +A    + +I I
Sbjct: 565 IDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEI 624

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              ++  L    AD +RL Q+ S ++ NA+ F+ K  T+ + A  +  + +F+V+++G  
Sbjct: 625 SFNAEPDL-KVQADPERLFQVLSNLIGNAIKFTPKMGTIGVAAMSNGAEIVFTVRDSGEG 683

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP +    +F R+ +    G   G GLGL I +  I  HGG ++  S
Sbjct: 684 IPPEQLPHIFERYWT-VKEGNPTGTGLGLYISQGIIKAHGGELAAQS 729


>gi|312877423|ref|ZP_07737387.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795812|gb|EFR12177.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 450

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 28/246 (11%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + +T   + L K ++++  F+ + ++ELR+PL+ I  + + +    L     K+  Y   
Sbjct: 221 KTITFMAQNLSKTEKLRRDFIANTTHELRTPLSIIKSYAEAIYDDILNKDQIKEYAYSIM 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-------MHEN 665
           I A    L NL+N+IL+L+ + +G ++LN   I L +L NE+   +          + E+
Sbjct: 281 IEADH--LNNLINEILELSKLQSGTIQLNIRPISLKNLFNEIISEVNIIKGNRKFWLFED 338

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +I  K  +DGKL         L + FS I+ NA+  ++    V +KA ++N     S+K+
Sbjct: 339 DIVTK--ADGKL---------LKRAFSNIIINAIHHTNDTGNVYIKAEKENDHIKVSIKD 387

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGV-GLGLSIVESFINLHGGHVSI-SSSDEG--- 780
           +G  I E     +FNRF S   +  ++G+ GLGLSI +  I +H G +S+ S   EG   
Sbjct: 388 DGEGIDEADLPYIFNRFYS---KSAKKGIGGLGLSIAKEIIQMHNGEISVFSKKGEGAEF 444

Query: 781 VTTINC 786
           V  + C
Sbjct: 445 VVKLKC 450


>gi|238764024|ref|ZP_04624979.1| Multi-sensor hybrid histidine kinase [Yersinia kristensenii ATCC
           33638]
 gi|238697695|gb|EEP90457.1| Multi-sensor hybrid histidine kinase [Yersinia kristensenii ATCC
           33638]
          Length = 919

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 9/238 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +   A  +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L  +Q +  E  
Sbjct: 372 ALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGTLGAVELLQNT---YLTPEQYRLAETA 428

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671
           S  S  LL ++N++LD + +++G + L+     L  LL++   +I +++   +I +   V
Sbjct: 429 SQCSHSLLAIINNLLDFSRIESGQLTLSQDKTALLPLLDQAMLTIHSQVLSKSIVLSTYV 488

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            SD  L     D QR+ QI   +L N++ F+ +G  + L   R      F+V++ G  I 
Sbjct: 489 SSDVPL-ELELDSQRIKQILINLLGNSVKFTQQGR-ISLTVERKGQQLCFTVEDTGCGID 546

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + +F  F+     GQ  G GLGL+I ++   + GGH+++ S     +  +  +P
Sbjct: 547 LQDQQKIFRPFIQTYDHGQ--GTGLGLTIADNLAKMMGGHITLYSKPNSGSRFSLTLP 602


>gi|167748589|ref|ZP_02420716.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662]
 gi|167651903|gb|EDR96032.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662]
          Length = 1088

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 128/252 (50%), Gaps = 15/252 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +AL    EA +KA+E K+SF+  +S+++R+P+  I+G T  +  S++     K  + 
Sbjct: 683 RNRKALLAAYEAAKKANEAKSSFLAQMSHDIRTPMNAIMGMTS-IAASRIND-PEKVREC 740

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-SIATKMHENNIR 668
           +  I  SS+ LL+L+N+ILD++ ++ G ++L      L +L+ ++   +    + +    
Sbjct: 741 LTKIDMSSSHLLDLINEILDMSKIEKGKIELTEEPFCLRELITDINSITRPEALQKGQEL 800

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFS 722
           +    D     F+ D  R+ Q+   +++NA+ ++  G  +I++     G       F+F+
Sbjct: 801 LFRTVDVVHTDFIGDAGRIRQVLINLITNAVKYTQNGGRIIVEVQEVTGRTPGAASFVFT 860

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-E 779
           V++NG  +  D    +F  F        RR  G GLG+SI +  ++   G++   S   +
Sbjct: 861 VEDNGIGMDPDFLNYIFVPFSRADDSKVRRVQGTGLGMSIAQGIVSAMNGNIQAESRKGQ 920

Query: 780 G---VTTINCRI 788
           G   + T+N +I
Sbjct: 921 GSRFIVTLNLKI 932


>gi|86148693|ref|ZP_01066971.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
 gi|85833512|gb|EAQ51692.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
          Length = 1462

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 27/246 (10%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL--------GS 601
           + ++AL    +   +A   K+ F+  +S+E+R+P++ I+G  +L++  +L        G 
Sbjct: 703 KQQQALDNARQKAERATAAKSQFLATISHEVRTPISGILGLLELMQEHQLSEELLNLHGG 762

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN            S+  LL++VND+LD + ++AG + LN + I L  +L  + Q  +  
Sbjct: 763 LNQ-----------SARNLLHIVNDVLDYSKIEAGKLDLNPTEIELGKVLARIVQPQSIH 811

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716
             +  +      D  L  ++ AD  RL QI +  L+NA+ F+  G+      +++     
Sbjct: 812 AQQKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKFTEHGTISLHIDVIEQNEHQ 871

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                +V + G  IP+D  +S+F  F        RR  G GLGLSI    I    G++ +
Sbjct: 872 QKVSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTGLGLSIALKLIEQMDGNIEL 931

Query: 775 SSSDEG 780
            SS+EG
Sbjct: 932 -SSEEG 936


>gi|332702027|ref|ZP_08422115.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552176|gb|EGJ49220.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 604

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 167/382 (43%), Gaps = 49/382 (12%)

Query: 415 MFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW------ 467
           M E++ +Q++ +  +   LV +    +D++ EGV +   DGRI+  N A   ++      
Sbjct: 239 MAESIQIQIETITVQKQQLVAI----LDNMKEGVMLLSADGRIQAVNRAMTLIFPGIEHC 294

Query: 468 --KTE-ENRLSPGTHIRNIAATCSRYY-NESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             KT  E  + P  H       C R   N   G  +             SL   LE  S 
Sbjct: 295 QGKTPLEAIMDPVLH-----QECERALENRETGAPV-------------SL--LLEPRSG 334

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
              +  I+PL  + + L  V V   +            L+  + ++  FV +VS+ELR+P
Sbjct: 335 VFYDVGIVPLKESGSGLGAVVVFHDI----------SRLKHLERVRRDFVANVSHELRTP 384

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT+I G+ + L++    S  +K   +++ I  ++  +  ++ D+L+L+ ++A       +
Sbjct: 385 LTSIKGYAETLQSDPAASPQAKG--FLDIIVKNANHMTKILGDLLNLSRLEADRQAFELA 442

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            +     +    +   +      + +      K    +AD  RL+Q+F  ++ NA+ +S 
Sbjct: 443 PVDAQAAVMSAYRECESLGRGRGVGLVCRIPEKAVFVLADYDRLVQVFRNLIENALRYSP 502

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRG-VGLGLSIV 761
           +  +V +     +G+ +F V + G  IP D    +F RF     HR +  G  GLGL+I 
Sbjct: 503 EHGSVTVFHQTGDGEVLFGVSDRGPGIPRDEQAKIFERFYRVEKHRLKMGGSSGLGLAIA 562

Query: 762 ESFINLHGGHVSISSSDEGVTT 783
           +  +  HGG + + S   G  T
Sbjct: 563 KHIVERHGGRIWVVSPATGEDT 584


>gi|295692614|ref|YP_003601224.1| sensor protein [Lactobacillus crispatus ST1]
 gi|295030720|emb|CBL50199.1| Sensor protein [Lactobacillus crispatus ST1]
          Length = 484

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 15/232 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + NE ++  +E ++ F+   ++E+R+PLT I G  + L+   +   +  +S  +  
Sbjct: 238 QALKQSNEEVKAQEERRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEDSKPKS--IAL 295

Query: 613 ISASSTILLNLVNDILDLATVDAG---IMKLNY-STIVLNDLLNEVKQSIATKMHENNIR 668
           +   +  L+ LVN+ LD   +      ++K N+ +TI+L+DL +++KQ+ ATK    N  
Sbjct: 296 MQRETKRLIRLVNENLDYEKIRNNQIMLVKTNFNATIILHDLKSQLKQN-ATKA---NDE 351

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V +  +L  + ADR R  Q+   ++ NA+ F+  G  +I+   R       SVK+NG 
Sbjct: 352 LVVEAPDQLPIY-ADRDRFTQVMVNLVQNAIQFTHDGK-IIISGKRIEHGTQLSVKDNGI 409

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSS 777
            + ++  K +F RF        R G    GLGL+IV S I  HGG V + S+
Sbjct: 410 GMSKNQTKYIFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVEVFST 461


>gi|291537791|emb|CBL10902.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 437

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 118/219 (53%), Gaps = 7/219 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +++  F  +VS+EL++PLT I G+ +L+ +   G  ++  + +   I  S+  L +L+ND
Sbjct: 218 QMRQEFTANVSHELKTPLTAISGYAELIASGMTGGEDT--AHFANEIHKSAERLQSLIND 275

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           I+ L+ +D   +KL + T+ L+DL  +   S+  +  +N + + +  +G       ++  
Sbjct: 276 IIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEVTLHL--EGASVPMNGNKTL 333

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           L ++   + SNA+ ++ KG +V +    +N   +  VK+ G  IP++  + VF RF  V 
Sbjct: 334 LEELLFNLCSNAVRYNKKGGSVTIVTTIENTRPVLIVKDTGIGIPKEQQERVFERFYRVD 393

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            +      G GLGL+IV+  +  H   +++ +S+ GV T
Sbjct: 394 KSRSKSTGGTGLGLAIVKHIVAQHDAQMTL-TSEVGVGT 431


>gi|254475748|ref|ZP_05089134.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214029991|gb|EEB70826.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 742

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 120/239 (50%), Gaps = 9/239 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T + + E+ L +   A  +   +K+ F+  +S+E+R+P+  +IG   +L+ ++L   +
Sbjct: 343 DMTAAKQYEQQLNDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTEL---D 399

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y + I  S+  LL+L+ND+LDL+ +DAG + L+           +  +    +  
Sbjct: 400 EEQRLYADTILGSARTLLSLINDVLDLSKMDAGEVTLSEVDFDPRACFQQTLKLFEPQAQ 459

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDF 719
           E  I++ + +++        D +RL Q+   ++ NA+ F+  G+  +   A   RD+   
Sbjct: 460 EKGIQLHLDVAEDVPQLLNGDDRRLRQVILNLVGNAVKFTDDGAVAVSVNADHTRDHVTL 519

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            FSVK++G  I  +    +F RF        RR  G GLGL+I        GG +++ S
Sbjct: 520 RFSVKDSGIGIAPEQQSRIFERFSQADAAITRRFGGTGLGLTISRLLCEAMGGDITVRS 578


>gi|129306885|gb|ABO30405.1| GacS [Pseudomonas sp. PITR2]
 gi|129306905|gb|ABO30415.1| GacS [Pseudomonas sp. PILH1]
          Length = 204

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSSQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|219850592|ref|YP_002465025.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219544851|gb|ACL26589.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 913

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 126/271 (46%), Gaps = 10/271 (3%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           ++   ++L   I P   +  ++   N+T   +    L    EA  +A+  + SF+  +S+
Sbjct: 372 QVFDTTLLPIEITPGHVSGGLIVGRNITVERQIATDLLRAKEAAEQAERARTSFLAAISH 431

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  +I  T++L     G L  +Q  +VE I   S  LL L+N++LDL+ ++AG +
Sbjct: 432 EMRTPLNAVIASTEVLLR---GGLTDEQRDFVETIRIGSESLLTLINNVLDLSKLEAGQV 488

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
           +L      L  ++  V +    +     + + V  D  L   V  D  R+ QI + ++SN
Sbjct: 489 ELEPKPTDLRAIITTVCELFRREAVRKGLHMGVRIDPALPPLVIVDGVRVRQIVTNLVSN 548

Query: 698 AMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR 752
           A+ F+  GS  I    L  A D       V + G  I  +    +F  F+   + + +R 
Sbjct: 549 AIKFTDHGSVSITVELLDVADDRCQVAIRVSDTGIGITSEHLPKLFQPFIRYRSEQVRRD 608

Query: 753 GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           G  LGL+I     +L GG +   S   EG T
Sbjct: 609 GARLGLAISAQLASLMGGELRADSRLGEGST 639


>gi|327538030|gb|EGF24720.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1122

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 130/251 (51%), Gaps = 18/251 (7%)

Query: 544 NVTDSV--RAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           N+T+ V  R ERA     L +       A + K++FV ++S+E+R+P+T I+G+ DL++ 
Sbjct: 692 NLTEMVYLRIERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTPMTAILGYADLVRD 751

Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +   Q+ +++E I  +   LL ++NDILDL+ ++AG +++N+       L+ +V+
Sbjct: 752 M----IEDPQAIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNHEKFEPARLIEDVR 807

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +  +  E  + + V   G L   + +D +RL QI   ++ NA+ F+ KG   I    R
Sbjct: 808 SIMEVRAKEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKFTQKGWVQI--RVR 865

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            N      + + G  + ++  K +F  F        R   G GLGL+I +    + GG +
Sbjct: 866 FNKWLHIDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGLAISKRLTEMLGGTI 925

Query: 773 SISSSDEGVTT 783
            I+SS EGV +
Sbjct: 926 -IASSTEGVGS 935


>gi|312891713|ref|ZP_07751222.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311295796|gb|EFQ72956.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 604

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 19/229 (8%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   K+ + ++ F+  +S+E+R+PL  +IG ++LL    + S    Q + +E +  S+  
Sbjct: 216 ERSEKSSKAQSEFLSTMSHEIRTPLNAVIGMSNLL---MMESPRPDQKENLEILRFSAGN 272

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA----TKMHENNIRIKVISDG 675
           LL LVND+LD   +++G  K+ +  I  N  L+E+ Q I      K  E  +   +  D 
Sbjct: 273 LLTLVNDVLDFNKIESG--KITFENIKFN--LHELMQHICGGQIMKAEEKGLNFHLSVDT 328

Query: 676 KLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729
            L +   + D  RL QI   ++SNA+ F+++G+  +    ++   +     FS+++ G  
Sbjct: 329 FLKTHYLIGDPTRLSQIIFNLISNAIKFTNRGAVTVDISCIEDRHNEATIKFSIRDTGIG 388

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I E+    +F+ F   +    R+  G GLGL+IV+  ++L GG + +SS
Sbjct: 389 IAEEKMADIFDPFTQESVTTTRQFGGTGLGLAIVKRLLDLQGGRIGVSS 437


>gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1364

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 15/244 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +
Sbjct: 675 PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSL 734

Query: 663 HENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
               + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 735 SAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    + L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852

Query: 773 SISS 776
            + S
Sbjct: 853 EVES 856


>gi|227524552|ref|ZP_03954601.1| sensor kinase protein [Lactobacillus hilgardii ATCC 8290]
 gi|227088227|gb|EEI23539.1| sensor kinase protein [Lactobacillus hilgardii ATCC 8290]
          Length = 468

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 34/293 (11%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTDSVRAERA 554
           GW   ++           L  T    S S LEY +++P+P +            +  ++ 
Sbjct: 181 GWYFISSTAKRLTQPISQLSQTARDQSKSELEYETLLPVPKS-----------PMEVKQL 229

Query: 555 LTEKNEALRK---ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYV 610
            T  NE L      ++ + +F+ + ++ELR+P+  I G   L++  + G  + +   + +
Sbjct: 230 TTSFNELLTSINYKNQQEKTFISNAAHELRTPIAAIRGHIQLVQ--RHGRDHPEIVDRSI 287

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNI 667
           ++I+  S  +  LVND+L L+  D G +KL+Y  I L  LLNE    ++++  +    NI
Sbjct: 288 QFINNESARMQTLVNDLLALSRADRGDVKLDY--IDLTSLLNETVEEQRAVLKQTINVNI 345

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             K +         A+   + QI S +L NA  +S   S + +  ++    +  SV+N G
Sbjct: 346 PTKTV-------VYANADNVQQILSALLDNAGKYSPADSQITVALSQHGSQYSLSVQNTG 398

Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SIP++    +F RF     AH  Q  G GLGLSIV+    L+  H+ I+ +D
Sbjct: 399 PSIPDNQKDQIFERFYRGDQAHNHQVSGTGLGLSIVKQLAELN--HIQITVTD 449


>gi|16801127|ref|NP_471395.1| hypothetical protein lin2061 [Listeria innocua Clip11262]
 gi|16414562|emb|CAC97291.1| resE [Listeria innocua Clip11262]
          Length = 596

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 129/246 (52%), Gaps = 9/246 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +    
Sbjct: 336 ILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-IDG 394

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  + 
Sbjct: 395 VAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVIANF 454

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAARD 715
                EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   D
Sbjct: 455 DVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTID 514

Query: 716 N--GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHGG 770
               + + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H G
Sbjct: 515 ETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNG 574

Query: 771 HVSISS 776
            +S+ S
Sbjct: 575 KISVES 580


>gi|295100812|emb|CBK98357.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 449

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 13/246 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +   +++ ++R L E NE +R+       F  +VS+EL++PLT+I G+ +L++T     
Sbjct: 203 LIPFAENIHSDRMLRENNEKMRQ------EFTANVSHELKTPLTSISGYAELIETGIAKP 256

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-T 660
            ++    +   I   ++ ++ LVNDIL L+ +D          +   DLL+  ++ +   
Sbjct: 257 ADTPD--FARKIHVEASRMIQLVNDILQLSHLDNVSETGAAPAMETVDLLDVARECVERQ 314

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDF 719
           K++  +  I +   G+       R  L ++   +  NA+ ++  G  V I+ A   +G  
Sbjct: 315 KVNARHSYISLTYLGESAPVTGSRSLLDELCQNLCDNAIRYNRPGGKVQIITACTRDGHC 374

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS- 776
             +VK+NG  IP++   SVF RF  V  +      G GLGL+IV+    +H   + + S 
Sbjct: 375 TLTVKDNGIGIPKEAQTSVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLDSV 434

Query: 777 SDEGVT 782
            DEG T
Sbjct: 435 VDEGTT 440


>gi|317051957|ref|YP_004113073.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316947041|gb|ADU66517.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 378

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 4/229 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L +K+  L K +E+KN F+   +++LR+P+  I+  +D L       L+S+   ++
Sbjct: 127 ANRDLQKKHAELEKLNELKNQFLGMAAHDLRNPIGTIMTLSDFLLEEAFEHLSSEHIHFL 186

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +SS  +LNL+ND+LD+A ++AG M LN + + L  L+ +       +  +  + + 
Sbjct: 187 TMIRSSSGFMLNLLNDLLDIAKIEAGRMGLNITPVNLETLIEKTLAFQRFQARKKRVELV 246

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                +    +AD  ++ Q+   +L+NA+ FS     V +      G    +V + G  I
Sbjct: 247 FSCYEQHPMVLADSLKIEQVLQNLLTNAIKFSPPEGKVTVNLFGSQGHLTVAVTDQGPGI 306

Query: 731 PEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P D   ++F  F   V  A  G+ +G GLGLSIV+  I  H G + + S
Sbjct: 307 PADQLSNIFKPFSRDVPPAPEGE-KGTGLGLSIVQKIILAHRGSIWVES 354


>gi|302879443|ref|YP_003848007.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582232|gb|ADL56243.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1346

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 123/239 (51%), Gaps = 10/239 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ++D   A + L     A   A   K+ F+ ++S+E+R+P+  IIG T +   S+L     
Sbjct: 602 ISDRKLALKDLEIARNAADLASRAKSDFLANMSHEIRTPMNAIIGLTRITLDSELAP--- 658

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ  ++  +  +S  LLN+++DILD + ++A  +++     +L D++ E       K+ E
Sbjct: 659 KQRDHLRKVYNASRALLNILDDILDYSKIEANKLEIERVEFILEDVIRECFDLFMQKLQE 718

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNG--DF 719
             + + +  D  +  S + D  RL QI + +++NA+ F+ +G   I  A  + +N   + 
Sbjct: 719 KELELFIEIDPLISCSLLGDPLRLGQILNNLINNAIKFTQRGEIHIRAALISENNQTLNL 778

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            FSV++ G  + +     +FN F        R+  G GLGL+I +  + L GG +S++S
Sbjct: 779 KFSVRDTGIGMDQSQQDRLFNAFTQADSSITRKYGGSGLGLTISKRLVELMGGALSVAS 837


>gi|209547648|ref|YP_002279565.1| integral membrane sensor hybrid histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209533404|gb|ACI53339.1| integral membrane sensor hybrid histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 759

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 118/260 (45%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591
           A   L   +V   V  ER + +  E  R+  E     K+  +  VS+E+R+PL+ ++G T
Sbjct: 206 ANGRLLLQSVARDVTDERLIAQGREEARQKAEYNSAAKSRLLATVSHEVRTPLSGLLGMT 265

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  ++L     +Q  Y+  I  S   L  LV D+LD +T++ G   L+  +  L  LL
Sbjct: 266 HLLAETRL---TQEQQDYLANIRQSGHALTQLVEDLLDFSTIEVGRFALHPRSESLRKLL 322

Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V + +A + HE  I I   +S     +   D  RL Q+   ++ NA+ F+  G  V +
Sbjct: 323 ESVVEMLAHRAHEKGIEIGATVSSDVPENMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 381

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHG 769
           + + D  D   +V ++G  +  +    VF  F        R  G GLGL+I    +    
Sbjct: 382 RVSLDADDLSITVTDSGPGMTAEEQARVFGEFEQGGTVADRSSGTGLGLAISARIMREFN 441

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G ++++S     +    R P
Sbjct: 442 GTLTVASEKGRGSEFTIRFP 461


>gi|119469631|ref|ZP_01612500.1| putative membrane bound sensor or esterase [Alteromonadales
           bacterium TW-7]
 gi|119446878|gb|EAW28149.1| putative membrane bound sensor or esterase [Alteromonadales
           bacterium TW-7]
          Length = 936

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 12/244 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYI 613
           L +  + LR A+++K+ F+ +VS+E+R+PLT I+G TD L     G    +Q    +  I
Sbjct: 460 LQDVAQELRAANDVKSQFLANVSHEIRTPLTAILGQTDDLMN---GLYEPEQLKDELAII 516

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L +L+ND+LDL+ ++A  ++LN S   +  L+N+V      +    N+R+  + 
Sbjct: 517 QRHSNHLKSLINDVLDLSKIEANRLELNVSCFDMVQLVNDVHAMFNPQAKAKNLRL--VL 574

Query: 674 DGKLGSFVADR---QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           + K+G     R    R+ QI   + +NA+ F+  G  +I     + G  +  VK+ G  +
Sbjct: 575 ENKVGDEFYTRLDIMRVKQILINLCANAIKFTQSGQVLIALNKTEQG-IVLIVKDTGIGM 633

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K +F  F    +   RR  G GLGLS+ +   ++ GG++S+ S  +  +  +  +
Sbjct: 634 NSSQLKLIFEYFSQADNSISRRFGGTGLGLSLSQQLASMMGGYISVQSEYKKGSQFSFFL 693

Query: 789 PSKE 792
           P  +
Sbjct: 694 PCAQ 697


>gi|170732652|ref|YP_001764599.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia cenocepacia MC0-3]
 gi|169815894|gb|ACA90477.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia cenocepacia MC0-3]
          Length = 1220

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 127/244 (52%), Gaps = 11/244 (4%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ---SQYV 610
            A + ++EA R A+  K++F+  VS+ELRSPL  I G+  +L T++   +++ +    + V
Sbjct: 835  AQSARDEAER-ANTAKDNFLALVSHELRSPLNVISGWAAVLMTARERGVSTDEEMSQRAV 893

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I     +   L++D+LD++ + +G   L+   +     +  V +S   +      +I 
Sbjct: 894  TTILRHCQLQAELIDDLLDVSRISSGRFSLDTKPVDFAAAVRTVVES--NRPAAEKKQIT 951

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            ++S G  G  +   D +RL Q+ S +L NA+ F+  G  V +   +       SV +NG 
Sbjct: 952  LVSAGLQGRAIVSGDARRLQQVASNLLGNALKFTPDGGRVEVALTQLGTLVELSVTDNGI 1011

Query: 729  SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
             +  ++   +F+RF+ +     R   G+GLGLSIV+  ++ HGG V+ SS  EG  T + 
Sbjct: 1012 GVKAELLPRLFDRFMQSDITRTRNYGGLGLGLSIVKHLVSAHGGTVTASSEGEGRGTRLT 1071

Query: 786  CRIP 789
             R+P
Sbjct: 1072 VRLP 1075


>gi|78043110|ref|YP_359461.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995225|gb|ABB14124.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 531

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 9/238 (3%)

Query: 542 FVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + N+ + VR ER   L+  NE L +A+  K+  +  VS+EL++PLT+I+ F ++L  +  
Sbjct: 281 YHNLEEKVR-ERTHELSLANEELARANAFKSEIIAMVSHELKTPLTSILAFGEIL-LADS 338

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L   Q +Y+E I  S   LL  +  +L +A ++AG + + YS + L   L +  +   
Sbjct: 339 ENLLPWQKEYLEDIMESGQELLKQIETLLTMAKIEAGKITVTYSPVNLQQFLEQCFKFYK 398

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K     + +K+ ++   G  + D  +L  I   I+ NA+ F+  G  + +   +  G  
Sbjct: 399 NKARSRRVSLKIKTN-ITGILITDEHKLKLILGNIIGNAIKFTPPGGKISVGLRKIFGRL 457

Query: 720 IFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              VK++G  I PED+  ++FN+F     +    G GLGL++ +    L G  + + S
Sbjct: 458 YIYVKDSGPGIAPEDL-PNIFNKFWRKDQKVD--GTGLGLTLAKDLCELLGYEIKVKS 512


>gi|152974986|ref|YP_001374503.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023738|gb|ABS21508.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 601

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 141/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  S DDE  SL  ++  LS                    VN+ D +     A 
Sbjct: 323 FDFTEKLPISADDEIGSLSSSINTLS--------------------VNLKDRIDRLNIAN 362

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ +  +  F+  VS+EL++PL+ I  F + +K      ++   + Y + 
Sbjct: 363 TKLQQDIERERQLERTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTTYYTDV 418

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL  +T  + DL+ +V   +   M E ++++++ 
Sbjct: 419 ILEETENMNRLIVEMLELAKLESGTYKLEMTTFSIGDLIQQVYTKLLFSMEEKHLQVEMD 478

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  +    A+R R+ Q+   +LSNA+ ++     + ++           ++NNG+ IP+
Sbjct: 479 IDCSI-YVKANRNRIEQVVVNLLSNAIRYTPDTKHICIRVIDGEEKVKVEIENNGNPIPD 537

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ + LH  +  + + D GV
Sbjct: 538 ESLQKIWDRFYRLDASRSRHTGGTGLGLSIVKNILELHHANYGVYNIDNGV 588


>gi|307824939|ref|ZP_07655161.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307733986|gb|EFO04841.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 2035

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 22/239 (9%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS--LNSKQSQY 609
            E AL E     R    +++ F+  +S+ELR+PL  I+G++ +L    LG   LN +Q   
Sbjct: 1548 EAALVEAERLAR----LRSEFMARMSHELRTPLNGILGYSQIL----LGENRLNERQHVM 1599

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR- 668
            V  +  S   LL+L+NDILD A ++AG  +L+ S I L   L+ +   ++ K  +  +  
Sbjct: 1600 VNVMQQSGEHLLSLINDILDFAKIEAGKQELSLSDIHLPSFLHNLADIVSVKAEQKQLAF 1659

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILK-----AARDNGD 718
            I  I+        AD  RL Q+   +LSNA+ +S +G      TV+ K     A  + G 
Sbjct: 1660 ICDIAAAVPEGIRADDMRLKQVLLNLLSNAVKYSEQGQISLRVTVLKKPFSEGAPVELGR 1719

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISS 776
              F ++++G  I     +S+F  F   A  +    G GLGL I    + L G  + +SS
Sbjct: 1720 LRFEIQDSGIGIEAGQLESIFKPFEQAADIQYSGGGTGLGLVISRELVRLMGSEIFVSS 1778


>gi|256821209|ref|YP_003142408.1| histidine kinase [Anaerococcus prevotii DSM 20548]
 gi|256799189|gb|ACV29843.1| histidine kinase [Anaerococcus prevotii DSM 20548]
          Length = 348

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 122/232 (52%), Gaps = 5/232 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+K +   N  + +++++LR+PLT+IIG+  +L   K    N ++ +Y+  +  ++  L 
Sbjct: 120 LKKRENEDNDLITYLAHDLRTPLTSIIGYLSMLDEMK-DLPNKQREKYIRQLLETALGLE 178

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+N   ++A ++ G   ++   I L   L ++K  +   M ENN +I + S+G +   V
Sbjct: 179 DLINQFFEIARLNNGEFSIHKEKIDLEYFLIQLKDELYPMMEENNHKINISSEGSIVVNV 238

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  ++ +    IL NA+ +S   + + +K  +     I  + N   ++ E   +++FN+
Sbjct: 239 -DPNKMKRALENILKNAILYSYANTEIKVKIYQTYKCVILKIINKADTLEEAQIRNMFNK 297

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  ++ A   ++ G GLGL I +  I LH G + + SS+  V  I  R+ +K
Sbjct: 298 FTRLNLARNSKKVGSGLGLPIAKEIIELHEGKIEVESSNNEVIVI-VRLKNK 348


>gi|295839841|ref|ZP_06826774.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           sp. SPB74]
 gi|197698680|gb|EDY45613.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           sp. SPB74]
          Length = 391

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 15/236 (6%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTI 619
           A R+ +      +  V++ELRSPLT++ GFT  L  +K    N  Q +  +E + A +  
Sbjct: 156 ARRRTERSHAELIATVAHELRSPLTSVKGFTATL-LAKWERFNDDQKRLMLETVDADAHR 214

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +  L+ ++LD++ +DAG M+L    + +       V+  IA     +   + V     L 
Sbjct: 215 VTRLITELLDISRIDAGRMELRRQPVDIAGAAARHVQAHIADGRSCDRFLVTVRR--PLP 272

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPED 733
           +  AD  ++ Q+ S +L NA+     G TV +  A   G       + +V + G  IPE+
Sbjct: 273 ALWADPDKVDQVLSNLLENAVRHG--GGTVTIDIAPTAGGEGPEGTVITVSDEGQGIPEE 330

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF RF   + RG   G GLGL IV+  + +HGG +++  +  G       +P
Sbjct: 331 SMNRVFTRFWRGSKRG---GTGLGLYIVKGIVEVHGGWITVGRAPCGGARFRFMLP 383


>gi|153872278|ref|ZP_02001216.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152071255|gb|EDN68783.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 623

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 15/225 (6%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+ELR+P+  I+GF+ L++  +  ++ S Q   +  I  S   LL+L+
Sbjct: 345 ANQSKSLFLANMSHELRTPMNAILGFSQLMERDQ--AITSTQQNNLRIIQRSGEHLLSLI 402

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           ND+LD++ +++G M L   +  L   L ++   I  +    N+      D KL  ++  D
Sbjct: 403 NDVLDMSKIESGRMTLETESCDLPQTLKDIADMIHIRAKNKNLLFTWEYDPKLAHYIKTD 462

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----------FIFSVKNNGSSIPE 732
             +L QI   +L NA+ ++ +G   +   +++                  V+++G+ I  
Sbjct: 463 VGKLRQILINLLGNAIKYTHEGGLSLRVHSKEMATTSASEKPYQHRVYVEVEDSGAGIGP 522

Query: 733 DMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +    +F+ FV  ++ +G   G GLGLSI   +I + GG + + S
Sbjct: 523 EEVDKIFDAFVQVSSSKGISEGTGLGLSITRRYIQMMGGDIRVMS 567


>gi|254245733|ref|ZP_04939054.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184]
 gi|124870509|gb|EAY62225.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184]
          Length = 1220

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 127/244 (52%), Gaps = 11/244 (4%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ---SQYV 610
            A + ++EA R A+  K++F+  VS+ELRSPL  I G+  +L T++   +++ +    + V
Sbjct: 835  AQSARDEAER-ANTAKDNFLALVSHELRSPLNVISGWAAVLMTARERGVSTDEEMSQRAV 893

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I     +   L++D+LD++ + +G   L+   +     +  V +S   +      +I 
Sbjct: 894  TTILRHCQLQAELIDDLLDVSRISSGRFSLDTKPVDFAAAVRTVVES--NRPAAEKKQIT 951

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            ++S G  G  +   D +RL Q+ S +L NA+ F+  G  V +   +       SV +NG 
Sbjct: 952  LVSAGLQGRAIVSGDARRLQQVASNLLGNALKFTPDGGRVEVALTQLGTLVELSVTDNGI 1011

Query: 729  SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
             +  ++   +F+RF+ +     R   G+GLGLSIV+  ++ HGG V+ SS  EG  T + 
Sbjct: 1012 GVKAELLPRLFDRFMQSDITRTRNYGGLGLGLSIVKHLVSAHGGTVTASSEGEGRGTRLT 1071

Query: 786  CRIP 789
             R+P
Sbjct: 1072 VRLP 1075


>gi|56695086|ref|YP_165433.1| sensory box histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56676823|gb|AAV93489.1| sensory box histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 823

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 130/269 (48%), Gaps = 15/269 (5%)

Query: 531 IPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           I L      L F+    ++T+ ++ E  L E  +  +   + K   +  +S+E+R+PL  
Sbjct: 306 ISLAETSDQLVFISFLRDITNRLKTEDDLREARDTAQAGAQAKAQLLTVMSHEMRTPLNG 365

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G  DL++  +   L+ KQ + V  I  S  +LL  VN +LDL+ +++G+++       
Sbjct: 366 ILGSLDLMERDE---LSPKQVRLVRAIRVSGELLLTQVNRVLDLSRLESGMIEFPKEPFA 422

Query: 647 LNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           L  ++  + +S+     E  N ++  ++ D   G  + +R  L Q    +L NA+ F+  
Sbjct: 423 LLPMVRRLTESLTAAAEERGNRLQTTLVGDDP-GVVLGNRIALQQALVNLLGNAIKFTRN 481

Query: 705 GSTVILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSI 760
           G  + L+  R N D +  F + + G  IP    + +F+ FV+   A+  +  G GLGLSI
Sbjct: 482 GE-ISLEVERLNDDRMIEFRISDTGLGIPAKDIERIFDEFVTIDTAYARENPGTGLGLSI 540

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
               +   GG + + S +   +    R+P
Sbjct: 541 TRRLVWAMGGEIEVESIEHEGSLFLIRLP 569


>gi|332534201|ref|ZP_08410048.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036367|gb|EGI72837.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 672

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 129/257 (50%), Gaps = 14/257 (5%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF N+T++V     L  K     +  E ++     +S+ELR+PL    G T +L T    
Sbjct: 274 TFQNITEAVTLREELKNKQAQAERLLEDRSMLFAKISHELRTPLN---GITGMLTTLIDE 330

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               K+++ ++    S+ ILL+++N++LD + ++ G +KL  + ++LN    ++  S+ T
Sbjct: 331 HNEQKRTEKIKVALRSADILLSIINEVLDFSKINHGELKLEPTDVLLNTTFTDLI-SLYT 389

Query: 661 KMHEN-NIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            + +N N+ ++V   ISD        D  RL QI S +LSNA+ F+  G   +  +  +N
Sbjct: 390 PLFKNSNVELEVKNEISDSCWA--YCDNTRLSQITSNLLSNALKFTEHGCVKLHTSVINN 447

Query: 717 GDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHV 772
            + +     V + G  +     +S+F+ F      +  + G GLGL+IV+  +   GG +
Sbjct: 448 NNKLTLNIKVADTGRGMTSQFLESLFSPFTQEVDAKNSKGGTGLGLAIVKELVEYMGGTI 507

Query: 773 SISSSDEGVTTINCRIP 789
            +SS     TT +  IP
Sbjct: 508 KVSSKVNQGTTFSLSIP 524


>gi|326406912|gb|ADZ63983.1| two-component system histidine sensor kinase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 517

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 138/264 (52%), Gaps = 30/264 (11%)

Query: 530 IIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           I PLP+  ++ M+T ++V+              + R+  +  N+F+ +VS+EL++PLT+I
Sbjct: 277 ITPLPDLDSRFMVTMMDVS--------------SYRRTVDAHNAFIANVSHELKTPLTSI 322

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI--MKLNYSTI 645
            GF +LL+T  + S ++K   +   I+  S+ L+NLV D L L   +  I   K+N +T+
Sbjct: 323 KGFAELLETDSISSSDTK--NFASIINKESSRLMNLVQDTLLLTKQNHRIDKKKINLTTL 380

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           + N L     QS   +++E ++ ++  S  +  +F  +   +  IF  ++ NA+ ++   
Sbjct: 381 IQNIL-----QSSGPQINEKSLHLE--SQIEEITFKTNEPMVHSIFENLIENAIKYTPAN 433

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764
             + +    +    IFSV +NG  + E   + +F+RF   +  R +  G GLGL+IVE  
Sbjct: 434 GQIFVSLHLEQNKVIFSVTDNGPGLSEIQKERIFDRFYRVDESRAEVSGTGLGLAIVEKN 493

Query: 765 IN-LHGGHVSISSSDEGVT-TINC 786
           +  LHG    +S   +G T T+N 
Sbjct: 494 VQELHGTIDVVSILGKGTTFTVNL 517


>gi|306823059|ref|ZP_07456435.1| exopolyphosphatase [Bifidobacterium dentium ATCC 27679]
 gi|309801199|ref|ZP_07695328.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bifidobacterium dentium JCVIHMP022]
 gi|304553691|gb|EFM41602.1| exopolyphosphatase [Bifidobacterium dentium ATCC 27679]
 gi|308222088|gb|EFO78371.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bifidobacterium dentium JCVIHMP022]
          Length = 358

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +  E  E L+ AD+++   V +VS+ELR+P++ +    + +    +          +E I
Sbjct: 117 SFNEMAEELQHADQMRRDMVANVSHELRTPVSALQAMVENMADGVV----EPTPANLESI 172

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV 671
              +  L +L+  +LDL+ ++AG   L       +D ++E  +   IA   H ++I + +
Sbjct: 173 LNQTHRLSDLIAFLLDLSRMEAGAASLQIEKFNFHDFIDETVEPLEIADAGHAHDIEMHI 232

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
            ++ ++     D+ RL Q+F+ I++NA+  S+  +TV+++A   +D G  + +V N GS 
Sbjct: 233 PANIEME---GDQDRLRQLFTNIIANALKHSADNTTVLIEAHENKDFGTIVTNVVNFGSQ 289

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           IP++    +F RFV        +  G GLGLSI      LHGG V +     G
Sbjct: 290 IPQEARSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVRVVDDQRG 342


>gi|326792138|ref|YP_004309959.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326542902|gb|ADZ84761.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 420

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 6/236 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + + KA E +  FV   S+EL++PLT I   TD++ ++    + + QS+++ YI   +  
Sbjct: 187 KPVAKAWEKQKQFVADASHELKTPLTVIATNTDVVLSNPFDYVEN-QSKWLHYIKTETER 245

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LVND+L LA VD     L+ S   +++    V     + + E+N    +     L  
Sbjct: 246 MTKLVNDLLYLAKVDDDEALLHQSEFNISEAFTNVCLPFESIIFESNKHFHMDITPDLLV 305

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKS 737
           +  D  RL Q+   +L NA+  +++   +     RD      +FSV N G  IP +    
Sbjct: 306 Y-GDENRLKQLAIILLDNAIKNANEAGDIYFSLRRDASKNKLVFSVTNTGPGIPVEHHNK 364

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RF  V  +   +  G GLGLSI +S +  H G + + S+ EG TT    +P K
Sbjct: 365 IFERFYRVDPSRARETGGYGLGLSIAKSIVTQHAGSIEVQSTLEGPTTFLVILPMK 420


>gi|257455156|ref|ZP_05620394.1| sensory box histidine kinase/response regulator [Enhydrobacter
           aerosaccus SK60]
 gi|257447489|gb|EEV22494.1| sensory box histidine kinase/response regulator [Enhydrobacter
           aerosaccus SK60]
          Length = 912

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 21/222 (9%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           V +ELR+PL+ ++G  DLL   K    NS+Q + +  +  SS  ++ L+ND+LD+A +DA
Sbjct: 351 VGHELRTPLSGLVGMIDLLAEDK-AQFNSEQQETIATLQQSSYTMIQLLNDMLDVAKLDA 409

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694
           G ++ N ++I L  LL +  + +        I + +  D     F+  D  +L QI   +
Sbjct: 410 GRLQTNVTSIDLLQLLRQTTELMVGNARHQKISLYIFVDPFTPRFIDCDEGKLRQIILNL 469

Query: 695 LSNAMDFSSKGSTVI----------LKAARDNGDFIFS-------VKNNGSSIPEDMCKS 737
           L+NA+ F+ +G   I          L AA+ + +   S       VK+ G  I E   + 
Sbjct: 470 LTNAVKFTKEGYVAITVDKTDSRHPLIAAKTSQNMTVSKDWLKITVKDTGLGISEKDQQK 529

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F+ F   +++   Q  G GLGL+I  SF +L GG + + S 
Sbjct: 530 LFSYFEQANDSISRQFGGTGLGLAISNSFSHLLGGFIHLESQ 571


>gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 584

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 14/251 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +DS+R    L    EA   A   K+ F+ ++S+E+R+P+  ++G  +LL  + L     +
Sbjct: 193 SDSIRLRIELNAAKEAAEAASRAKSQFLANMSHEIRTPMNGVLGIAELLLATPLA---EQ 249

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   ++ +  S   LL+++NDILD + ++AG ++L  S   L  +L +V  + A      
Sbjct: 250 QRSRLQTLYRSGQSLLDVINDILDFSKIEAGKLELRESDFDLRAMLRDVLDAFAATAAAK 309

Query: 666 NIRIKVISDGKLGSFV-----ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +      +LG+ V     AD+ RL Q+ + ++ NA+ F+  G  V+     D+    
Sbjct: 310 GLALS----SRLGADVPAGLHADQARLRQVLTNLIGNAIKFTEAGRVVVTVERLDDQHLR 365

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F+V++ G  +  +    VF+ F     +H  +  G GLGL+I    + L  G + + S+ 
Sbjct: 366 FAVQDTGVGLAAEERARVFDAFAQADVSHTRRHGGTGLGLAISRQIVTLMAGEIGVDSTP 425

Query: 779 EGVTTINCRIP 789
              +T   ++P
Sbjct: 426 GAGSTFWFKLP 436


>gi|194292091|ref|YP_002007998.1| two-component regulatory system protein; signal transduction
           histidine kinase atpase [Cupriavidus taiwanensis LMG
           19424]
 gi|193225995|emb|CAQ71942.1| two-component regulatory system protein; signal transduction
           histidine kinase ATPase [Cupriavidus taiwanensis LMG
           19424]
          Length = 671

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 7/224 (3%)

Query: 570 NSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           N F+  +S+ELR+PL  +    T +      G+L    +Q +  I    T L  LV+D+L
Sbjct: 303 NEFLATLSHELRNPLAPVRSALTAMRLAPGDGAL---ANQSLALIERQVTHLSRLVDDLL 359

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+  + +G ++L    + L+++L    +     +   + R+ V          AD+ RL+
Sbjct: 360 DIGRITSGRIELRTGPVELDEILALAIEGARPALDAKSQRVDVQGAPAAIRMDADKTRLV 419

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   ++ NA  FS  G+ V + AA  N      V + G  I       +F  FV  +  
Sbjct: 420 QVMQNLVLNASKFSPPGTVVTIAAAVQNRTLEIRVSDQGRGISPHALDDIFQLFVQESRP 479

Query: 749 GQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
           G   + G+G+GLS+  S + LHGG ++ +S+  G+ +T   R+P
Sbjct: 480 GTDVQGGLGIGLSLCRSLVELHGGTIAATSAGPGLGSTFTVRLP 523


>gi|149174997|ref|ZP_01853621.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
 gi|148846334|gb|EDL60673.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
          Length = 883

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 17/239 (7%)

Query: 553 RALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R L EK E L++A+         K+ F+ ++S+E+R+P+T ++G+TDLL     G   S 
Sbjct: 463 RELEEKAERLKQANTDAEAASRAKSEFLANMSHEIRTPMTAVLGYTDLLIEESWGRPGS- 521

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             Q ++ I  +   LL L+NDILDL+ +++G + +      L + + E++  +  +    
Sbjct: 522 -IQLLDVIKRNGHYLLELINDILDLSKIESGNLTIETIQFSLLEKMKEIQSLMKVRAELR 580

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDF 719
            +  K+  +G L   + +D  RL QI   ++ NA+ FS  G  V      L ++ DN   
Sbjct: 581 GLHFKLSFEGTLPVEIQSDPTRLKQILINLIGNAIKFSPDGGKVSVETSFLNSSADNPLL 640

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F + + G  +  +    ++  FV       R+  G GLGL+I +    + GG ++  S
Sbjct: 641 EFKISDTGIGMTAEQIAMLYQPFVQADSSTTRKFGGTGLGLAISKRLAEMLGGDLTCES 699


>gi|4138853|gb|AAD03598.1| ethylene response sensor [Vigna radiata]
          Length = 636

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 123/264 (46%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  +        
Sbjct: 316 ESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALS---SLLLE 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E +  SS +L  L+ND+LDL+ ++ G ++L      L+ +L E+ + I 
Sbjct: 373 TELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEMGKFNLHGVLGEIVELIK 432

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + I +I    L +  + D +RL Q    ++ NA+ F+ +G   I         
Sbjct: 433 PIASVKKLPITLILAPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSIRASVAKPES 492

Query: 710 --------LKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
                         +G F     VK++G  IP      +F +F + +  G  R   G GL
Sbjct: 493 LQDWRPPEFYPTSSDGHFYIRVQVKDSGCGIPPQDIPHLFTKF-AQSRSGPARPSSGAGL 551

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL GGH+ I S   G
Sbjct: 552 GLAICKRFVNLMGGHIWIESEGPG 575


>gi|325929287|ref|ZP_08190418.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|325929326|ref|ZP_08190457.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|325540309|gb|EGD11920.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|325540348|gb|EGD11959.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 560

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 11/228 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +AL   D  ++ F+  +S+ELR+PL  +I    L++T ++    ++Q + +  ++ ++T 
Sbjct: 180 QALASRDA-QSRFISTMSHELRTPLNAVINCAQLIETEQM---PAQQRELLHSVTVNATA 235

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L + VN++LD+A++D G ++L+   + L D++  VK   AT      + + V  D     
Sbjct: 236 LRHRVNEVLDVASIDGGRLQLHRKPLNLLDVVTTVKAVCATAASSKGVTLDVRVDSPQAP 295

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDM 734
            V  D  R+ Q+ S ++ NA+ F+  G TV L       ++      +V + G  +P+D 
Sbjct: 296 HVMGDEGRIEQVISNLVINAIKFTPAGGTVDLLIDATQVQERWSIAVTVTDTGIGVPDDQ 355

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              +F  F  +S        GVGLGL I  S  +  GG +++S +  G
Sbjct: 356 KAYIFTPFTQLSTGFSRVEGGVGLGLYIALSVSDAMGGSLTVSDNPAG 403


>gi|294010920|ref|YP_003544380.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292674250|dbj|BAI95768.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 1048

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT +    +    R +  L    EA   A+  K+ F+  +S+E+R+PL  I G+  LL  
Sbjct: 647 QTSMLVDEIEAHARTDAELQRAKEAADAANLAKSRFIVGISHEIRTPLNTISGYAQLLDK 706

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  +  +  V  I  S+T L +L++ ++D++ ++ G +++  + + L+DLL+++  
Sbjct: 707 DP-----AHLADAVRVIRRSATHLTDLIDGLVDVSRIENGSVRIQRAPVNLHDLLHQLGD 761

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     I+        L  +V +D +RL QI   ++SNA+ ++ +GS  +    R 
Sbjct: 762 MFRLQAAARGIQFSHSRAPHLPQWVYSDEKRLRQILINLISNAIKYTPQGSASLAVHWR- 820

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           N    F +K++G  I  D  K +F  F   NA  GQ  GVGLGL+I     ++ GG V++
Sbjct: 821 NPVAEFEIKDSGVGIAADDLKRIFEPFERINAVPGQ-PGVGLGLTITRLLADIMGGQVTV 879

Query: 775 SS 776
            S
Sbjct: 880 ES 881


>gi|240145146|ref|ZP_04743747.1| putative sensor histidine kinase [Roseburia intestinalis L1-82]
 gi|257202824|gb|EEV01109.1| putative sensor histidine kinase [Roseburia intestinalis L1-82]
          Length = 437

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 117/219 (53%), Gaps = 7/219 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +++  F  +VS+EL++PLT I G+ +L+ +   G  ++  + +   I  S+  L  L+ND
Sbjct: 218 QMRQEFTANVSHELKTPLTAISGYAELIASGMTGGEDT--AHFANEIHKSAERLQALIND 275

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           I+ L+ +D   +KL + T+ L+DL  +   S+  +  +N + + +  +G       ++  
Sbjct: 276 IIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEVTLHL--EGASVPMSGNKTL 333

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           L ++   + SNA+ ++ KG +V +    +N   +  VK+ G  IP++  + VF RF  V 
Sbjct: 334 LEELLFNLCSNAVRYNKKGGSVTIVTTIENTRPVLIVKDTGIGIPKEQQERVFERFYRVD 393

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            +      G GLGL+IV+  +  H   +++ +S+ GV T
Sbjct: 394 KSRSKSTGGTGLGLAIVKHIVAQHDAQMTL-TSEVGVGT 431


>gi|254525204|ref|ZP_05137259.1| sensor histidine kinase IrlS [Stenotrophomonas sp. SKA14]
 gi|219722795|gb|EED41320.1| sensor histidine kinase IrlS [Stenotrophomonas sp. SKA14]
          Length = 344

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 13/223 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST---ILLNLVNDIL 628
           F   +++ELR+P+TN++  T +     LG   S + +Y E + ++      +  ++ D+L
Sbjct: 126 FSADIAHELRTPVTNLVTQTHV----ALGQPRSNE-EYREILYSNLEEFDRMGRMIGDML 180

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA  +     L  STI L++L+  +         ++ I + V   G +GS  ADR+ L 
Sbjct: 181 FLAQTENDPRNLRLSTIDLSELVRSLFDYFEALAEDSGITLGV--KGAIGSIAADREMLT 238

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           +  + +LSNA+  + +G ++ +  ++D      SV N G  IPE     +FNRF  V  A
Sbjct: 239 RALNNLLSNAIRHTPRGKSITVLLSQDEQWTTISVVNPGERIPERDLPKLFNRFYRVDPA 298

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    G GLGL+IV+S    HGG V+++SS E VT  +  +P
Sbjct: 299 RQRNTAGAGLGLAIVKSIAEAHGGSVAVTSS-ELVTRFDLVLP 340


>gi|171316802|ref|ZP_02906013.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171098060|gb|EDT42876.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1004

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 124/253 (49%), Gaps = 10/253 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  FV++T   R ER L E + A   A   K++F+  +S+E+R+PL  I+G  +LL  + 
Sbjct: 495 LCNFVDITARKRLERNLAEASRAAESASRAKSAFLATMSHEIRTPLNAILGSLELLDRTP 554

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+  Q + V+    S T LL +VNDILD++ ++AG M + + +  L  L  +V    
Sbjct: 555 ---LSDAQRKRVQTALTSGTSLLGIVNDILDVSKIEAGQMTIEHVSFDLASLARDVAAMF 611

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714
                  ++    + D  L   ++ D  R+ QI   ++ NA+ F+  G  V+   L+ A 
Sbjct: 612 EPVAKSRHLDFCCMVDPALAPRYIGDPTRIRQIMINLVGNAIKFTESGEVVLEVYLEDAD 671

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL-HGGH 771
           D       V ++G  +  +  +++F+ F        RR  G GLGL++ +   +L HG  
Sbjct: 672 DRNRIAIGVIDSGIGMSPEQQQNLFHAFTQADTSIARRFGGTGLGLALCKQLTDLMHGDI 731

Query: 772 VSISSSDEGVTTI 784
            SIS    G T I
Sbjct: 732 ESISEPGVGSTFI 744


>gi|149247545|ref|XP_001528181.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146448135|gb|EDK42523.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 2592

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 119/226 (52%), Gaps = 10/226 (4%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +A   A   K SF+ ++S+E+R+P  +++  +  L  +    LNS Q +YVE I +S+ +
Sbjct: 2084 QAAEDATAEKASFLANMSHEIRTPFNSLLSCSIFLLDT---PLNSTQREYVEAIKSSAMV 2140

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLG 678
             LN+++ IL  + ++ G   L+ +   LND +    Q    ++ +N + +   ++  ++ 
Sbjct: 2141 TLNIIDGILAFSKIEHGSFTLDNAPFSLNDCIESAIQLGGEQVVDNELELVFFNNCPQIN 2200

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR---DNGDFIFSVKNNGSSIPEDM 734
            + + D  R+ QI   ++ NA+ F+S+G  ++   AA    D  + + SV++ G  IPE  
Sbjct: 2201 TVMGDVTRVRQIIINLVGNAIKFTSQGHIIVSCNAAEITPDRYEILISVEDTGIGIPEMS 2260

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             K VF  F  V  + R +  G GLGL+I +   ++ GG +   S +
Sbjct: 2261 HKKVFGAFSQVDGSSRREFGGSGLGLAISKKLADIMGGDIRFESQE 2306


>gi|129306903|gb|ABO30414.1| GacS [Pseudomonas sp. P97.38]
          Length = 204

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSAQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|329851250|ref|ZP_08266007.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840096|gb|EGF89668.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 799

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 126/259 (48%), Gaps = 15/259 (5%)

Query: 544 NVTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++TD    E AL++ N  L         A EIK  F+  +S+E+R+PLT I+G+  LL  
Sbjct: 396 DITDLKLKELALSDSNAQLIAARHQAEAALEIKAQFLATMSHEIRTPLTTILGYAGLL-- 453

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L+ + + +V+ I  +   LL L+ND+LD++ ++AG + L    + +++L  E+ +
Sbjct: 454 GEQDDLSQEAAAFVKRIGKAGRTLLALINDVLDVSRLEAGQVTLTQQAVNVHELARELVE 513

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +    N+++ +  D +L  + + D  RL Q+ + ++ NA  F+S G   I   A +
Sbjct: 514 QFQMQASTRNLKLNLDYDEELPEWQLIDDTRLTQVLNNLVGNACKFTSDGVISISMRAVE 573

Query: 716 N---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           N         V + G  +  +    +F RF        R+  G GLGL+I    I L  G
Sbjct: 574 NLAGTRMRVEVGDPGPGLTTEQTGKLFKRFQQLDAGINRKHGGSGLGLAICAEIIKLMQG 633

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + SS    +T    +P
Sbjct: 634 EIGVVSSVTAGSTFWFEVP 652


>gi|309807799|ref|ZP_07701731.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168901|gb|EFO70987.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
          Length = 612

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++ 
Sbjct: 368 QKNENEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIA-PQFLGVIQNETERMIR 426

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR---IKVISDGKLGS 679
           ++ND+L+L+ +D G++K++   + LND L+ +       +  + ++   I+ I   +   
Sbjct: 427 MINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALW 486

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  +++Q+   I++NA+ +S  G  + ++  + +   I S+ + G  IP      +F
Sbjct: 487 VEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRKDLSRIF 546

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A   ++ G GLGL+I +  +  H G +   SS+   +T    IP
Sbjct: 547 DRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|227877263|ref|ZP_03995336.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256842826|ref|ZP_05548314.1| histidine kinase [Lactobacillus crispatus 125-2-CHN]
 gi|256848810|ref|ZP_05554244.1| histidine kinase [Lactobacillus crispatus MV-1A-US]
 gi|293381661|ref|ZP_06627642.1| phage holin, LL-H family [Lactobacillus crispatus 214-1]
 gi|312977654|ref|ZP_07789401.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
 gi|227863119|gb|EEJ70565.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256614246|gb|EEU19447.1| histidine kinase [Lactobacillus crispatus 125-2-CHN]
 gi|256714349|gb|EEU29336.1| histidine kinase [Lactobacillus crispatus MV-1A-US]
 gi|290921708|gb|EFD98729.1| phage holin, LL-H family [Lactobacillus crispatus 214-1]
 gi|310895393|gb|EFQ44460.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
          Length = 484

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 15/232 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + NE ++  +E ++ F+   ++E+R+PLT I G  + L+   +   +  +S  +  
Sbjct: 238 QALKQSNEEVKAQEERRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEDSKPKS--IAL 295

Query: 613 ISASSTILLNLVNDILDLATVDAG---IMKLNY-STIVLNDLLNEVKQSIATKMHENNIR 668
           +   +  L+ LVN+ LD   +      ++K N+ +TI+L+DL +++KQ+ ATK    N  
Sbjct: 296 MQRETKRLIRLVNENLDYEKIRNNQIMLVKTNFNATIILHDLKSQLKQN-ATKA---NDE 351

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V +  +L  + ADR R  Q+   ++ NA+ F+  G  +I+   R       SVK+NG 
Sbjct: 352 LVVEAPDQLPIY-ADRDRFTQVMVNLVQNAIQFTHDGK-IIISGKRIEHGTQLSVKDNGI 409

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSS 777
            + ++  K +F RF        R G    GLGL+IV S I  HGG V + S+
Sbjct: 410 GMSKNQTKYIFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVEVFSA 461


>gi|227889096|ref|ZP_04006901.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
 gi|227850325|gb|EEJ60411.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
          Length = 621

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 115/236 (48%), Gaps = 10/236 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L        N    +++  I   +  ++ 
Sbjct: 373 QKNEREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIA-PKFLHVIQDETERMIR 431

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-------QSIATKMHENNIRIKVISDG 675
           ++ND+L L+ +D G+ K++   + LND +N V        +S   KMH+    IK     
Sbjct: 432 MINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKMHKKKYSIKREFPH 491

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  +++Q+   I++NA+ +S  G  + ++  +     I S+ + G  IP    
Sbjct: 492 QALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLGIPRKDL 551

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A   ++ G GLGL+I +  +  H G +   S++   +T    +P
Sbjct: 552 NKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISLP 607


>gi|213971024|ref|ZP_03399145.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|301385587|ref|ZP_07234005.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058829|ref|ZP_07250370.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato K40]
 gi|302132142|ref|ZP_07258132.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924260|gb|EEB57834.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|331014872|gb|EGH94928.1| sensory box histidine kinase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 595

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E +     +  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLEEARARYEGQAQEQDIVLMLDIQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 PNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|83953054|ref|ZP_00961776.1| hypothetical protein NAS141_12136 [Sulfitobacter sp. NAS-14.1]
 gi|83842022|gb|EAP81190.1| hypothetical protein NAS141_12136 [Sulfitobacter sp. NAS-14.1]
          Length = 503

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 161/370 (43%), Gaps = 37/370 (10%)

Query: 115 FENWLKFHHYI--KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD 172
           F  W   HH +  + +   +K     +   +V  T  D  I    R++      R++ LD
Sbjct: 68  FHEWSDLHHNVSGRFAMFPDKPPSTPEGQLIVPAT--DPKIHTLIRITWEKHLCRVVVLD 125

Query: 173 G------IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-- 224
                  + SE AE TL   +L + +SV           +WH D A  +LW N +Y +  
Sbjct: 126 PNDMGVDLRSE-AEVTLT--RLRSTVSV----------PLWHTDHANRLLWYNDAYHELF 172

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
           N    G    +AI E+++LF  +      S++    +  +  + ++     ++   R +N
Sbjct: 173 NACHPG----QAI-ETQRLFPSDF-----SNATHRLSLRDRTTGVKDWYAVTHSQSRSIN 222

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            +    I   V  E    + +    +    L++ +AIFD+   L   N + ++L  +   
Sbjct: 223 CYQATCITALVRAEEAQRNFVQTLTKTFAQLSIGLAIFDRKSQLVLFNPALIDLTGLGAQ 282

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHV 402
           FL+  P+     + LR A K+PE  ++ TW+  +  +  ++    +++ W L +GQT  V
Sbjct: 283 FLSARPAIQTFFDKLREARKIPEPKDYATWRTTVSELISAAHDGRYEEIWSLESGQTFRV 342

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               +P G T ++ E+++ QV L   +   ++     +D L + + VF   G +  SN A
Sbjct: 343 KGRPHPDGATAFLIEDISAQVSLTRTFRAELEQGQAMLDTLDDAIVVFSSSGILTFSNTA 402

Query: 463 FRSLWKTEEN 472
           +  LW  + +
Sbjct: 403 YNDLWGVDPD 412


>gi|329132026|gb|AEB77974.1| GacS [Pseudomonas sp. P97.1]
 gi|329132028|gb|AEB77975.1| GacS [Pseudomonas sp. P97.6]
          Length = 203

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSAQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|325915224|ref|ZP_08177547.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538584|gb|EGD10257.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 765

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 114/245 (46%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 94  EQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 151 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAESRQLRLGL 210

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 211 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSIDIQLRRLGETRAQHLLRFQVRDT 270

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S      T 
Sbjct: 271 GIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGATF 330

Query: 785 NCRIP 789
              IP
Sbjct: 331 WFEIP 335


>gi|229005190|ref|ZP_04162910.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228756050|gb|EEM05375.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
          Length = 360

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 110/225 (48%), Gaps = 3/225 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I      
Sbjct: 127 EEERQTEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVNR 185

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ND+ +   V    ++LN   I + +LL ++      +  E NI  ++    +   
Sbjct: 186 LNMLMNDLFEYTRVQNNELQLNTVLIDIIELLGQLSVQFRMQFQEANIECRLSFPPEKLM 245

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD  +L+++F  ++ NA+ + + G  + + A +D    I  + N G  IP      +F
Sbjct: 246 VLADGDKLVRVFENLIMNAITYGNDGKFIDITAYQDGNMIIIDITNYGQPIPSTDLAHIF 305

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            RF  V  +      G GLGL+I +S + +H G + + S  E  T
Sbjct: 306 ERFYRVEKSRSAYTGGSGLGLAIAKSIVEIHDGTIEVYSDTEQTT 350


>gi|217963901|ref|YP_002349579.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290892107|ref|ZP_06555103.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|217333171|gb|ACK38965.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290558230|gb|EFD91748.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|307571529|emb|CAR84708.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 596

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +   
Sbjct: 335 AILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-ID 393

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  +
Sbjct: 394 GVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISN 453

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAAR 714
                 EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   
Sbjct: 454 FDVLAKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTI 513

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHG 769
           D    + + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H 
Sbjct: 514 DEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHN 573

Query: 770 GHVSISS 776
           G +S+ S
Sbjct: 574 GKISVES 580


>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 962

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 16/223 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           K+ F+ ++S+ELR+P+T ++G  DL    TS+L     +QS Y+     S   LL ++ND
Sbjct: 571 KSQFLANMSHELRTPMTGVLGMLDLALQSTSEL-----QQSDYIRTAYRSGRSLLQILND 625

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           ILDL+ V+AG   L+     L   + E     A +     I +++ ++       V D+ 
Sbjct: 626 ILDLSKVEAGKFSLDQKPFSLRSCVTEAADIAAPEAKRKGIELELDLAQDLPWHVVGDQV 685

Query: 686 RLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFN 740
           RL Q+ + ++ NA+ F+ +G  TV ++ A    +      F V + G  IP+D    +F 
Sbjct: 686 RLRQVLTNLVGNAVKFTERGRVTVQVEVADKTAEAELLLRFRVSDTGIGIPQDKRHLLFQ 745

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            F  V +++     G GLGL+I +  +   GG +   S  EGV
Sbjct: 746 AFSQVDDSNTRNYGGTGLGLAISKEIVQRMGGEIGFESG-EGV 787


>gi|120610910|ref|YP_970588.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
 gi|120589374|gb|ABM32814.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
          Length = 839

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 127/257 (49%), Gaps = 16/257 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++++   AERA  E  +A  +A   +  FV ++S+ELR+PL  IIGF      ++LGS
Sbjct: 582 LVDISEFREAERATREAYDAAEEAARTRTQFVANMSHELRTPLQAIIGF------AELGS 635

Query: 602 LNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S+  +       I A+   +L LVND+LD+A +++ I  ++     L   +  V + +
Sbjct: 636 ARSQDERLGAMFTDILAAGQRMLALVNDLLDVAKIESDIGTIHLERTDLRGHIRTVAREL 695

Query: 659 ATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
              +     ++RI +     +    AD +R  Q+   +L+NA+ FS  GS + L+A  D 
Sbjct: 696 GPLVASRRQDLRIDLPQHPLVAR--ADPRRFQQVVRNVLANAIKFSPDGSCIQLRAGMDA 753

Query: 717 GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSI 774
            D I   V++ G  IP    + +F+ F  ++  R +  G GLGL+I    +    G +  
Sbjct: 754 EDTICIEVQDQGPGIPPAELERIFDAFAQSSRTRNRSGGTGLGLAICRKIVEALEGRIH- 812

Query: 775 SSSDEGVTTINCRIPSK 791
           + + EG       +P++
Sbjct: 813 ARNVEGGAVFRIELPAR 829


>gi|309789683|ref|ZP_07684263.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228169|gb|EFO81817.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 526

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 111/218 (50%), Gaps = 3/218 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A R+  E++N+F+  +S+EL++P++ I G+   L  +          + +  I   +  L
Sbjct: 286 AQRREAELQNTFISVISHELKTPVSIIKGYASTLARTDATFSPDMLREGLTVIEEEADRL 345

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              + D+LD++ + AG  +L+     L+ L+ +V +S A ++ E +   ++     +   
Sbjct: 346 ARQIQDLLDVSRLAAGGARLDRCDFALSSLVADVVRSFAAQV-EGHFEFELRLADDMPPI 404

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +RL Q+ S ++SNA+ +S +G T+ + A  +    +  V + G  I  +  + +F 
Sbjct: 405 HGDYERLRQVLSNLISNAIKYSPEGGTIRIGARAEAERAVVYVADQGIGIAPEEHEQIFQ 464

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF  V N  R Q +G GLGL +  + I  HGG + + S
Sbjct: 465 RFYRVDNRLRRQTQGSGLGLYLARAIIEAHGGRIWVES 502


>gi|296132860|ref|YP_003640107.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296031438|gb|ADG82206.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 473

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 133/240 (55%), Gaps = 6/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R++    + L K ++ +  F+ +VS++LR+PLT+I+GF + L+ +K  +  ++ +++++ 
Sbjct: 230 RSINYMADKLEKLEKTRREFLANVSHDLRTPLTSILGFVEALQDNKDKNPETR-ARFLDI 288

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + + ++ L+ LVND+LD   ++ G+++LN   + + +L  +        + E  IRI   
Sbjct: 289 LHSETSRLIRLVNDLLDFTKIEEGVLELNKQPVDIAELAGKTLAKYQPILKEKGIRISFE 348

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S G   + V D  RL Q+ + ++ NA+ ++   + + LK +++  +   ++ ++G  IP 
Sbjct: 349 SSGNAVALV-DYDRLEQVLTNLMDNAVRYAR--NRIALKVSQEIQEIGITLSDDGPGIPG 405

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +++RF  V  +      G GLGL+IV+  ++ H G + + S     TT   ++P+
Sbjct: 406 EDLPYIWDRFYKVDKSRAKGAGGTGLGLAIVKRLVDAHNGSIDVESQPGKGTTFVIKLPA 465


>gi|253998596|ref|YP_003050659.1| histidine kinase [Methylovorus sp. SIP3-4]
 gi|253985275|gb|ACT50132.1| histidine kinase [Methylovorus sp. SIP3-4]
          Length = 480

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F++HVS+EL++PLT I   ++LL     G+L+ +Q +    +  SS  L  ++ ++L
Sbjct: 253 KQRFLRHVSHELKTPLTAIREGSELLSDEIGGALSPQQKEIANILRESSMRLQKMIENLL 312

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           + + V     +L  S      LL  V  S A  M    I I+   D +     AD +++ 
Sbjct: 313 NYSAVQYQKPQLELSGFDFPTLLENVLNSYALTMSSKQITIE--RDCETVHLKADAEKVA 370

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNA 746
            I   ++SNA+ ++ K  T+ L+  + N   +F V + G  +       +F+ F   +  
Sbjct: 371 TIVDNLISNAIKYTPKSGTIRLRTRQTNDSLVFEVHDGGPGVMAADKAKLFDPFYKGNGV 430

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +     G GLGLSI + +++ HGG + +  SD G      R+P
Sbjct: 431 YESLVSGSGLGLSIAKEYVDAHGGEIMLLPSDHG-AHFQVRLP 472


>gi|223984151|ref|ZP_03634302.1| hypothetical protein HOLDEFILI_01595 [Holdemania filiformis DSM
           12042]
 gi|223963883|gb|EEF68244.1| hypothetical protein HOLDEFILI_01595 [Holdemania filiformis DSM
           12042]
          Length = 624

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 125/233 (53%), Gaps = 3/233 (1%)

Query: 545 VTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           V+D++   R  ++ + E   K++++K   + +VS++L++P+T++I ++DLL  +++    
Sbjct: 373 VSDNLEKIREGVSHQVEEQLKSEKLKIELITNVSHDLKTPITSLINYSDLLTKAEIQPEY 432

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++   YV  I+  S  L NL+ D+ +++   +G ++++   + +N LL +    +  K+ 
Sbjct: 433 ARD--YVRIITQKSVRLKNLIQDLFEISKAASGNLQMDLRKLEINGLLMQTLAELDEKIE 490

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            +++  K+      G  +AD  RL  +F  +++NA+ +S + + V ++  R +     S 
Sbjct: 491 ASSLEFKIQYLETPGYILADGGRLYNVFDNLITNAIKYSMENTHVYIQIERQDDQICISF 550

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           KN  +   +    S+  RFV         G GLGL+I E+F+ L  G + +S+
Sbjct: 551 KNIANYELKFDPGSLTERFVRGDVSRSTEGSGLGLAIAETFVTLMKGQIEVSA 603


>gi|118443619|ref|YP_877113.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134075|gb|ABK61119.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 470

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           ++L + DE + SF+ +VS+ELRSP+T+I GF   +    +     K+  Y+         
Sbjct: 238 KSLEEVDENRRSFISNVSHELRSPITSIKGFIGGILDGIIP--KEKEKYYLSIAYEEIQR 295

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ND+LDL+T++AG   LN     +N+++        T +    + ++V  + +   
Sbjct: 296 LTRLINDLLDLSTIEAGKFVLNMKKEDINEIIRLSIIKFETIIKSKKLNVEVWLEEESVY 355

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSV 738
            + DR +++Q+ + ++ NA+ +  +   + ++  +  G +I+ SV N+G +I E+  K +
Sbjct: 356 ALVDRDKIIQVITNLIDNAIKYGKEEGNIEIR-TKVRGQYIYISVYNDGPNISEEDGKYI 414

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTI 784
           ++RF   +  R  +   GLGLSIV   +  HGG +   +  D+GV  I
Sbjct: 415 WDRFYKGDKSRTMKVSTGLGLSIVRRIVTKHGGDIWFENKEDKGVKFI 462


>gi|94270344|ref|ZP_01291716.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450841|gb|EAT01870.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 15/252 (5%)

Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R   A  +  E  R+A      K+ F+ ++S+E+R+P+  +IG   LL       L+ +Q
Sbjct: 149 RLGEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAE---DLSDEQ 205

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I +S   LL L+N ILD + ++AG ++L+       +L+ EV   +  +    N
Sbjct: 206 RSYAQIIMSSGQALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLLQPQAAAQN 265

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDF 719
           I +   +S G       D  RL Q+   ++ NA+ F+  G   +         A  +   
Sbjct: 266 ITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELSPAPADPAAPHCSL 325

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F+VK++G  IP +    +F RF  V  +   +  G GLGL+I    + L GG + + S 
Sbjct: 326 HFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVESE 385

Query: 778 DEGVTTINCRIP 789
           +   +T    +P
Sbjct: 386 EGKGSTFWFTVP 397


>gi|16803986|ref|NP_465471.1| hypothetical protein lmo1947 [Listeria monocytogenes EGD-e]
 gi|224501253|ref|ZP_03669560.1| hypothetical protein LmonFR_01810 [Listeria monocytogenes FSL
           R2-561]
 gi|16411400|emb|CAD00025.1| resE [Listeria monocytogenes EGD-e]
          Length = 596

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +   
Sbjct: 335 AILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-ID 393

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   + +  ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  +
Sbjct: 394 GVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISN 453

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAAR 714
                 EN + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   
Sbjct: 454 FDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTI 513

Query: 715 D--NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH-RGQRRGVGLGLSIVESFINLHG 769
           D    + + +V +NGS I E+    +F RF  V  A  RG+  G G+GL+IV++ +  H 
Sbjct: 514 DVARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHN 573

Query: 770 GHVSISS 776
           G +S+ S
Sbjct: 574 GKISVES 580


>gi|116493444|ref|YP_805179.1| Signal transduction histidine kinase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103594|gb|ABJ68737.1| Signal transduction histidine kinase [Pediococcus pentosaceus ATCC
           25745]
          Length = 378

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 123/252 (48%), Gaps = 22/252 (8%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-- 601
           +V  S+  ERAL +           K+  + +VS++LR+PLT+IIG+  L++  +  +  
Sbjct: 133 SVISSMEEERALKQS----------KDDLITNVSHDLRTPLTSIIGYLRLIEDRQFKNED 182

Query: 602 --LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L    + Y++ I   S     LV D+ +   V      L  +TI ++ +L ++  S  
Sbjct: 183 DILKYTHTAYLKSIQMKS-----LVEDLFEYTKVSQSNPHLTINTINVDSMLQQLAASFE 237

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +  + +  I      K      D +++ ++F+ +++NA+ + + G  + L A + N   
Sbjct: 238 LEAKQKHFVITSQCTPKDLEITGDAEKIGRVFNNLITNALKYGNGGKNIFLSAKQINDTV 297

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           IF V N+G  +P +    +F+RF  V  +      G GLGL+I +S + +H G +   S+
Sbjct: 298 IFEVANDGEKVPAEALGKLFDRFYRVEGSRSKATGGTGLGLAIAQSIVEMHNGTIEAHSN 357

Query: 778 DEGVTTINCRIP 789
           D+  T+   ++P
Sbjct: 358 DKR-TSFVIQLP 368


>gi|326693644|ref|ZP_08230649.1| histidine protein kinase; sensor protein [Leuconostoc argentinum
           KCTC 3773]
          Length = 451

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 131/262 (50%), Gaps = 24/262 (9%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L +A+ M+   ++T  ++ ER              +++ F+ + S+EL++PLT I GF +
Sbjct: 208 LKHAEVMIIIYDLTSVLQVER--------------MQSDFLANASHELKTPLTAITGFIE 253

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L+    G+  + +  +++ ++  +  L +LVNDIL L+ V      +  + +V++D++ 
Sbjct: 254 TLQ-GPAGADQATREMFLDIVAQEAKRLSSLVNDILSLSRVQQKREAVQ-TELVIHDMVA 311

Query: 653 EVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           E  Q +        ++++  V  D  +     D + +LQ    ++ NA+ ++ +G  + +
Sbjct: 312 EQWQHVMPLAETKAVQLRNDVPDDFIIRGLKTDVEMILQ---NLIVNAVKYNVQGGDIHV 368

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
            A +D+  +  +VK+ G  IP +    +F RF       QR+   G GLGL+IV   +N 
Sbjct: 369 TAYKDHQHWQLNVKDTGIGIPTNQQSRIFERFYRGDESRQRKIASGTGLGLAIVNEIVNK 428

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G + + S     TTI+  +P
Sbjct: 429 HNGEIKVQSQVAVGTTISVTLP 450


>gi|310659855|ref|YP_003937576.1| sensory box histidine kinase yycg [Clostridium sticklandii DSM 519]
 gi|308826633|emb|CBH22671.1| sensory box histidine kinase yycg [Clostridium sticklandii]
          Length = 602

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 187/411 (45%), Gaps = 59/411 (14%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPD 453
            V V S+   G +  MF  LT ++D      TL+++  E       I H+ +G+      
Sbjct: 221 RVTVKSDDEIGQLGSMFNYLTEKLD-----TTLLEISSEKSKLNAIIKHMEDGLVAIDGK 275

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNI---------AATCSRYYNESDGWDLFAAII 504
           G+I   NP+F S+    E  L+  ++ + I          A   +  + S    +F    
Sbjct: 276 GQIIHYNPSFLSMLNLREKDLTDKSYDKIIDDYSKDLEYGAILQKSISNSSENIIFE--- 332

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
              +++++ L+ +  L  D     S         ++ F ++T+S R E            
Sbjct: 333 ---NNKKRILKASPALFRDEAGRIS-------GAIVVFQDITESQRLE------------ 370

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLN 622
             +++  FV +VS+EL++P+T I  +++ L     G+L  K+    +VE I   +  + +
Sbjct: 371 --DMRREFVANVSHELKTPITTIKSYSETLLC---GALEDKELSKNFVEVIENEADRMSS 425

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           LV D+L L+ +D   +      + L +++ +  + +       N ++ + ISD  +  + 
Sbjct: 426 LVKDLLQLSHMDYEKVVWEMHHLDLREIVTDSVRKLEVHFQNKNQKLNMKISDEAVPIY- 484

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR ++ Q+   +L+NA+ ++ +   + + A   + + IF ++++G  IP++  K +F R
Sbjct: 485 ADRGKIQQVIINLLTNAIKYTPENGNIRISAQVVDKNAIFQIQDSGIGIPKEDIKRIFER 544

Query: 742 FVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F     +G+ R   G GLGLSI  + I  H G + +SS  E  +      P
Sbjct: 545 FY-RVDKGRSRAQGGTGLGLSIAHNIIKQHKGSIKVSSELEKGSIFTVYFP 594


>gi|229028788|ref|ZP_04184892.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
 gi|228732520|gb|EEL83398.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
          Length = 883

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 31/259 (11%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I 
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVIH 528

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--- 671
           +S   LL L+NDILDL+ V+AG + + +    ++D+        A  MH+N + I     
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDM--------AANMHQNFLHIAAQKN 580

Query: 672 ----ISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR------- 714
               I D  +    F  D +R+ QI   +LSNA  F+ KG   +    ++ A        
Sbjct: 581 VEFTIEDSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGFVSLHFDSIETANLSHEMQS 640

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             N     SVK+ G  I ++  + +F  F        R+  G GLGLSI + F  L GG 
Sbjct: 641 ISNDWMKISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGW 700

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++ S+    +T    IP+
Sbjct: 701 ITLESNVGEGSTFTVYIPN 719


>gi|83942005|ref|ZP_00954467.1| hypothetical protein EE36_07213 [Sulfitobacter sp. EE-36]
 gi|83847825|gb|EAP85700.1| hypothetical protein EE36_07213 [Sulfitobacter sp. EE-36]
          Length = 503

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 37/370 (10%)

Query: 115 FENWLKFHHYI--KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD 172
           F  W   HH +  + +   +K     +   +V  T  D  I    R++      R++ LD
Sbjct: 68  FHEWSDLHHNVSGRFAMFPDKPPSTPEGQLIVPAT--DPKIHTLIRITWEKHLCRVVVLD 125

Query: 173 G------IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-- 224
                  + SE AE TL   +L + +SV           +WH D A  +LW N +Y +  
Sbjct: 126 PNDMGVDLRSE-AEVTLT--RLRSTVSV----------PLWHTDHANRLLWYNDAYHELF 172

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
           N    G    +AI E+++LF  +      S++    +  +  + ++     ++   R +N
Sbjct: 173 NACHPG----QAI-ETQRLFPSDF-----SNATHRLSLRDRTTGVKDWYAVTHSQSRSIN 222

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            +    I   V  E    + +    +    L++ +AIFD+   L   N + ++L  +   
Sbjct: 223 CYEATCITTLVRAEEAQRNFVQTLTKTFAQLSIGLAIFDRKSQLVLFNPALIDLTGLGAQ 282

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHV 402
           FL+  P+     + LR A K+PE  ++ TW+  +  +  ++    +++ W L +GQT  V
Sbjct: 283 FLSARPAIQTFFDKLREARKIPEPKDYATWRTTVSELISAAHDGRYEEIWSLESGQTFRV 342

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               +P G T ++ E+++ QV L   +   ++     +D L + + VF   G +  SN A
Sbjct: 343 KGRPHPDGATAFLIEDISAQVSLTRTFRAELEQGQAMLDTLDDAIVVFSSSGILTFSNTA 402

Query: 463 FRSLWKTEEN 472
           + +LW  + +
Sbjct: 403 YNNLWGVDPD 412


>gi|329132016|gb|AEB77969.1| GacS [Pseudomonas sp. C10-186]
 gi|329132018|gb|AEB77970.1| GacS [Pseudomonas sp. C10-190]
 gi|329132022|gb|AEB77972.1| GacS [Pseudomonas sp. K93.52]
          Length = 203

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSSQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|224023356|ref|ZP_03641722.1| hypothetical protein BACCOPRO_00049 [Bacteroides coprophilus DSM
           18228]
 gi|224016578|gb|EEF74590.1| hypothetical protein BACCOPRO_00049 [Bacteroides coprophilus DSM
           18228]
          Length = 480

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 119/217 (54%), Gaps = 3/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++G LN +Q +  + I  +S  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPISAIMMSLQLLEDDRVGDLNEEQKELAQSIQDNSERLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           N+  ++L++  V++G ++L        +L+    ++   +  + NI+I+V   + K+G  
Sbjct: 311 NITGELLNMTQVESGKLQLKPRITKPIELIEYAIKANRVQAEKFNIQIEVQYPENKIGKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   +I+ A +   + I   V++ G  I     +S+F
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSPENGRIIIGARQTEDNHIEMYVRDFGKGIDPRYHQSIF 430

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +       + +G GLGLSI + F+  HGG +++ S
Sbjct: 431 DHYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 466


>gi|91215892|ref|ZP_01252861.1| Signal transduction histidine kinase [Psychroflexus torquis ATCC
           700755]
 gi|91185869|gb|EAS72243.1| Signal transduction histidine kinase [Psychroflexus torquis ATCC
           700755]
          Length = 502

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 125/241 (51%), Gaps = 7/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ALT++ E      E+K  F+  V++E ++PL+ I+    L          SK+ ++++
Sbjct: 266 QKALTKEKEL----GELKTKFLSLVAHEFKTPLSGIMTSATLAGKYTREEQQSKREKHLK 321

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIK 670
            I      L N++ND L +  +++G     +S   ++ ++NEV       + EN +I   
Sbjct: 322 TIRGKVKYLNNIINDFLSIERLESGKFNYTFSKFPISKVVNEVIYDANMLLKENQHIEYP 381

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              D    +F  D + L  I + +++NA+ +SS+ STV + A   +    FS+++ G  I
Sbjct: 382 DHIDSIYLNF--DEKILELILTNLINNAIKYSSEDSTVYIVAEEIDDKLAFSIRDEGIGI 439

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           PE   K +FNR+    +    +G G+GL+IV++ +   GG ++ +S++   +  N +IP 
Sbjct: 440 PEAEQKHIFNRYFRAENALLNQGTGIGLNIVKTHLENLGGTITFTSTEGEGSVFNVKIPL 499

Query: 791 K 791
           K
Sbjct: 500 K 500


>gi|1136289|gb|AAC47300.1| histidine kinase A [Dictyostelium discoideum]
          Length = 2150

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 19/263 (7%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++T     +R + EK EA  +A++ K++FV  VS+E+R+PL+ +IG +DLL  +   
Sbjct: 1360 TLRDMTSRKDMQRLILEK-EAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLET--- 1415

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +L+ +Q  YV+ I  SS  LL ++NDILD + +++  +K+      + +    V   ++ 
Sbjct: 1416 NLSEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLSV 1475

Query: 661  KMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
              +++ +I ++V  +     F  D  R+ Q+    LSNA+ F+S+G  +   +  D+   
Sbjct: 1476 AANDDVDILLRVPPNVPRIIF-GDAMRMRQVLLNRLSNAIKFTSRGHVLTDISVDDSIPP 1534

Query: 719  ---------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI-N 766
                        ++++ G  IP+ +  S+F  F    +   R+  G GLGLSI +  I  
Sbjct: 1535 TNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSITKRLIEE 1594

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            + GG + +SS     +   C IP
Sbjct: 1595 VMGGTIQVSSIVGQGSKFKCIIP 1617


>gi|16125186|ref|NP_419750.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221233920|ref|YP_002516356.1| hybrid sensor histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13422206|gb|AAK22918.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220963092|gb|ACL94448.1| hybrid sensor histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 605

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 19/252 (7%)

Query: 552 ERALTEKNEALR-----------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           ER LTE N  LR           KA+  K+ F+  +S+E+R+PL  ++G   ++ +   G
Sbjct: 196 ERELTE-NRRLRTEAQALALAAEKANRAKSEFLATMSHEIRTPLNGVLGMAQIMAS---G 251

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q + +E I+AS   LL L+N ILD++ ++ G M++      L   ++ +      
Sbjct: 252 KLQVDQRRRLETITASGQSLLGLINTILDVSRIEDGKMEIVEGPFDLTAQMHTLSLLYGG 311

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              + ++   + +S    G    D +RL Q+ S ++SNA+ F+  G+  +     D G  
Sbjct: 312 LARDKHLDFSLEVSPTVAGCRQGDGERLRQVLSNLISNAIKFTDSGAVRVTLDGDDQG-L 370

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +  V + G  IPE   + +F +F        RR  G GLGL+I +S   L GG +   + 
Sbjct: 371 VARVLDTGVGIPEAQRERLFTKFAQLDSSSTRRVGGSGLGLAICKSLAELMGGEIRFLAP 430

Query: 778 DEGVTTINCRIP 789
            EG       +P
Sbjct: 431 AEGGACFELTLP 442


>gi|77359506|ref|YP_339081.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874417|emb|CAI85638.1| aerobic respiration control sensor protein arcB [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 772

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 128/248 (51%), Gaps = 16/248 (6%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  EAL  A + K  F+  +S+ELR+PL  I+G T +L  ++L   N +Q  +   + +S
Sbjct: 265 EAAEALETAYKDKGKFIATLSHELRTPLNGIVGLTRMLLDTEL---NKQQRSWCNTVFSS 321

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L N+ NDI+DL  +D   + +  + I ++D +N+V         + ++   +   G 
Sbjct: 322 AETLGNIFNDIIDLDKIDREQLDIATNAINVSDFINDVVNFAGLIAEQKDLSFDIKRLGM 381

Query: 677 LGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI-FSVKNNGSSIPE 732
           L  +   D  RL Q+   +++NA+ F+ KGS  +  ++  RD+G ++   + + G  IP 
Sbjct: 382 LDIYAQLDPTRLRQVVWNLINNAVKFTHKGSVTLTCIRENRDDGPWLTMKISDTGEGIPA 441

Query: 733 DMCKSVFNRFVSNAH-RGQRR-GVGLGLSIVESFINLHGGHVSISSSD-EG------VTT 783
           +    +F+ +      +G    G G+GL++ ++ ++   G +S++S++ EG      +  
Sbjct: 442 EQLSRIFDMYYKAPDLKGTNAIGSGIGLAVTKALVDAMQGIISVNSTEGEGSCFIVEIPL 501

Query: 784 INCRIPSK 791
           I C  P++
Sbjct: 502 ILCSAPTE 509


>gi|117919558|ref|YP_868750.1| hybrid sensory histidine kinase BarA [Shewanella sp. ANA-3]
 gi|117611890|gb|ABK47344.1| Hpt sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 935

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 14/232 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y+  I  S
Sbjct: 291 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYINTIERS 345

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + L E    I+       + + V I+  
Sbjct: 346 ATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGETITLISGSAQAKGLELVVDIAPN 405

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIF---SVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++ L+      D +     V + G  I 
Sbjct: 406 VPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDDQVVLRCDVIDTGIGID 465

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780
           E+    +F  F        RR  G GLGL I +  +N  GG +  +SS D+G
Sbjct: 466 ENQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKG 517


>gi|119716165|ref|YP_923130.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536826|gb|ABL81443.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 535

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 5/228 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A  +K+ FV  VS+ELR+PLT+I+G+T +L       L +     +E ++ +S  L  L
Sbjct: 308 RALRVKDEFVASVSHELRTPLTSIVGYTQMLLERD--DLPADVVAQLEVMARNSGRLHRL 365

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V D+L  A +D G   L  + + L  ++ +  ++ A     + + + V+         AD
Sbjct: 366 VADLLHTARLDEGGAPLVRAPVDLAAVVRDCVEAAAPAARRSGVEL-VLELPPTLVLRAD 424

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           ++RL Q+   ++SNA+ ++S G  V +    D       V + G  I       +F RF 
Sbjct: 425 QERLAQVVDNLVSNAVKYTSAGGCVQVTLLLDGDRAELCVADTGIGIAAADRDRLFTRFF 484

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +R  +GVGLGLSI ++ +  HGG + + S     +    R+P
Sbjct: 485 RARQAEERSIQGVGLGLSITKAIVESHGGRIEVESELGRGSVFRVRLP 532


>gi|260555378|ref|ZP_05827599.1| signal transduction histidine kinase [Acinetobacter baumannii ATCC
           19606]
 gi|260411920|gb|EEX05217.1| signal transduction histidine kinase [Acinetobacter baumannii ATCC
           19606]
          Length = 1157

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 135/261 (51%), Gaps = 8/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +       + L +   A  +A++ K+ +V  +S+ELR+PL +I+G++ LL+ 
Sbjct: 652 QTALLIDEIAAHEATSKDLQDARTAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 711

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L+ +    +  IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q
Sbjct: 712 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 769

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  + N++        L  +V  D++RL Q+   +L NA+ F++ G T+ LK    
Sbjct: 770 MFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 828

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I E   + +FN F   SN  +G   G GLGL IV+  I+L GG +S
Sbjct: 829 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLIDLLGGQLS 888

Query: 774 ISSS-DEGVT-TINCRIPSKE 792
           ++S  ++G    I   +PSKE
Sbjct: 889 VTSQLNQGSQFKIKFYLPSKE 909


>gi|221126281|ref|XP_002164625.1| PREDICTED: similar to histidine kinase [Hydra magnipapillata]
          Length = 547

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 124/241 (51%), Gaps = 10/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T S  A +A+   ++   +A+  K+SF+ ++S+E+R+P+  I+G + L++ ++   LN
Sbjct: 26  DITPSYEARQAIEHAHQQAEEANRAKSSFLANMSHEIRTPMNAIMGMSYLVQKTE---LN 82

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+  I +SS  LL ++NDILD + ++AG + + +    L+ +L+ +   +  K  
Sbjct: 83  ERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGKLGIEHIEFELDKVLDNLAGLVGDKAA 142

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI- 720
              + +    D ++    V D  RL QI     +NA+ F+ +G   I ++   ++   + 
Sbjct: 143 SKGLELVFDVDKQVPLQLVGDPLRLGQILVNYANNAVKFTERGEIDIRVRVQEESTSHVV 202

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F+V++ G  I E+    +F  F        R+  G GLGL+I      +  G V + S
Sbjct: 203 LHFAVRDTGIGISEEQKSVLFQSFQQADASTTRKFGGTGLGLAISRQLAQMMEGEVGVDS 262

Query: 777 S 777
           +
Sbjct: 263 T 263


>gi|188575184|ref|YP_001912113.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188519636|gb|ACD57581.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 603

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 164/372 (44%), Gaps = 31/372 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + E + +   D RI L NPAF  L+  EE     G  +  +       + ++      A 
Sbjct: 233 VREPIVLLDADQRILLHNPAFAELYGLEER----GNELMALEDVGEGVWRDAQIHQRLAD 288

Query: 503 IIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAE 552
           ++        ++ E++   G L  +   ++    +PLP+       ++T  +++    A+
Sbjct: 289 VLLRGRELWDYEHEQRGADGVLRTM---LINARRMPLPDTTDEDVVLMTVSDISLQKTAQ 345

Query: 553 RALTEKNEALR-KADEIKN------SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             + E N  +  K +++        +F   VS++LR+PL ++ GF+D L      + + K
Sbjct: 346 MRIQELNRQMEGKVEQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEK 405

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y+E IS+S+  + +L++D+L  + +  G ++L   ++ +  L+ E +  + + +   
Sbjct: 406 SRHYMEVISSSARRMASLIDDLLVYSRLGRGALRLQ--SVDMQSLVAETRAILDSNVQSE 463

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIF 721
           N   +V      L   VAD   + Q++  +L NA+ +S+K       +      +G   F
Sbjct: 464 NTGHRVEWHIAPLPVLVADENMMRQLWMNLLGNAVKYSAKREVAKVEVTYTPMADGGHQF 523

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780
           SV++NG+    +    +F  F       +  G G+GL+ V   +  HGG V      DEG
Sbjct: 524 SVRDNGAGFDMEYSAKLFGVFQRLHKASEYAGTGIGLASVRRVLTRHGGRVWAEGLVDEG 583

Query: 781 VTTINCRIPSKE 792
            T      P+ E
Sbjct: 584 ATFYFVLPPALE 595


>gi|153808571|ref|ZP_01961239.1| hypothetical protein BACCAC_02867 [Bacteroides caccae ATCC 43185]
 gi|149128893|gb|EDM20110.1| hypothetical protein BACCAC_02867 [Bacteroides caccae ATCC 43185]
          Length = 538

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 23/234 (9%)

Query: 557 EKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++ E ++K  E     K+ F+ ++S+E+R+PL  + GF+ +L    +     KQ   +  
Sbjct: 295 QEQEKVKKQAENSIRTKSLFLSNMSHEIRTPLNALSGFSTILTEESIDEETRKQCNDI-- 352

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYST-----IVLN--DLLNEVKQSIATKMHEN 665
           I  +S +LL L+ND++DL++++ G M   +       +  N  D++ ++KQ+ A      
Sbjct: 353 IQQNSELLLKLINDVIDLSSLEIGKMTFKFKICDAVGLCRNVIDMVEKIKQTHA------ 406

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           ++R     D      + D  RL Q+   +L NA  F+S+GS  +    +     +FSV +
Sbjct: 407 DVRFSTPLDSL--ELLTDSARLQQVLINLLINATKFTSQGSITLQLEQQTEDTALFSVTD 464

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            G+ IP++  K +FNRF       Q  G GLGLSI +  I   GG + I    E
Sbjct: 465 TGTGIPKEKQKKIFNRFEKLNENAQ--GTGLGLSICQLIIEQLGGSIWIDPDYE 516


>gi|303248462|ref|ZP_07334721.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
 gi|302490173|gb|EFL50092.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
          Length = 1324

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 19/249 (7%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T   R E  L +  E    A + K +F+ ++S+E+R+PL  ++G+  L+   +   L 
Sbjct: 791  DITAGKRLEAELADALERAEGASQAKGAFLANMSHEIRTPLNAVLGYVQLMLADR---LE 847

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATK 661
             +Q + +  +  S+  LL+++NDILD + ++AG M+L      L   L  V  +Q +  K
Sbjct: 848  PRQRERLTVVEESAGTLLSIINDILDYSKIEAGRMELKAEPFDLVRGLEGVLKEQEVLAK 907

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------ 715
                ++ +  I++   G+   D  RL Q+   +++NA+ ++ KG   +  A  D      
Sbjct: 908  AKGLDLVLD-IAENVPGAVRGDGLRLRQVLRNLVNNAVKYTDKGGVRLGVAIADAPCAAS 966

Query: 716  NGD-----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
             G+       F+V + G  IP +  +++F+ F  +      ++ G GLGL+I      L 
Sbjct: 967  GGEGGRLWLRFTVADTGIGIPYEQQETIFDSFTQIDGGLTKRQAGTGLGLAICRRLAGLM 1026

Query: 769  GGHVSISSS 777
            GG +S+ S+
Sbjct: 1027 GGTISLEST 1035


>gi|83815808|ref|YP_445757.1| PAS domain-containing protein [Salinibacter ruber DSM 13855]
 gi|83757202|gb|ABC45315.1| PAS domain S-box protein [Salinibacter ruber DSM 13855]
          Length = 904

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 125/254 (49%), Gaps = 7/254 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKL 599
           T  ++T+  + ERAL E  +   +A ++K+S + ++S+E+R+PLT+IIGF +     +K 
Sbjct: 647 TIQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKE 706

Query: 600 GSL--NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             L  +S    Y E I  S   LL  +  +L+L+ ++AG M+L    + L +    V + 
Sbjct: 707 LDLPDDSPLPNYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAEE 766

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +  E  + +++ ++       AD+  +  +   +LSNA+ ++  G  V L+  R+ G
Sbjct: 767 LRPRAEEKEVLLQLETEAAWAE--ADKGGVQILARNLLSNAVKYTEAGGRVRLRTYREEG 824

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  +  +  + +F  F   S     + +G G+GL++ +       G + + 
Sbjct: 825 AVAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSIDVE 884

Query: 776 SSDEGVTTINCRIP 789
           +     T I   +P
Sbjct: 885 TEKGEGTRITVWLP 898


>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1767

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 126/247 (51%), Gaps = 12/247 (4%)

Query: 538  TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +++ V++T+  + ++  L  K EA   A + K  F+ ++S+E+R+P+  IIG + L   
Sbjct: 1009 AVVSMVDMTELKLLSDELLVAKEEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            ++L   + KQ  YVE I  +S  LL+++NDILD + ++AG + +      L+ +L ++  
Sbjct: 1068 TEL---DKKQKNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSD 1124

Query: 657  SIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILK 711
              + K     + +   ++         D  RL Q+   +++NA+ F+ +G  +    +++
Sbjct: 1125 MFSEKAAHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVE 1184

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
               D+    FSV+++G  +  +    +F  F        R+  G GLGL+I +  + L G
Sbjct: 1185 QQNDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMG 1244

Query: 770  GHVSISS 776
            G + + S
Sbjct: 1245 GTIGVES 1251


>gi|329925071|ref|ZP_08280015.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
 gi|328940190|gb|EGG36522.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
          Length = 459

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 116/238 (48%), Gaps = 8/238 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            ++  + L + ++++  FV +VS+E++SPL +I GF+  L+T +L     +Q  Y+  I 
Sbjct: 225 FSQMAKGLAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLS--EEQQQHYLSIIE 282

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A S  +  L   +L LA++D     L+ ST    D+  ++KQ +         +   I  
Sbjct: 283 AESRRMSQLSKQLLMLASLDKEENILDKSTF---DVAEQIKQVLFHTEWSWRSKDLTIDM 339

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
               ++V  D+Q L Q+++ +++N++ F+     + L+    N      + + G  IP +
Sbjct: 340 SLPPTYVYGDQQLLHQVWTNLITNSIKFTVPEGAISLRVIEHNTQCRIEISDTGIGIPPE 399

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +FNRF  V  A        GLGLSI +  + LHGG + ++S     TT    +P
Sbjct: 400 HLPHIFNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVILP 457


>gi|315037994|ref|YP_004031562.1| histidine kinase [Lactobacillus amylovorus GRL 1112]
 gi|325956446|ref|YP_004291858.1| histidine kinase [Lactobacillus acidophilus 30SC]
 gi|312276127|gb|ADQ58767.1| histidine kinase [Lactobacillus amylovorus GRL 1112]
 gi|325333011|gb|ADZ06919.1| histidine kinase [Lactobacillus acidophilus 30SC]
          Length = 483

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + NE ++  ++ ++ F+   ++E+R+PLT I G  + L+   +   +  +S  +  
Sbjct: 238 QALKQSNEEVKAQEKRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKS--IAL 295

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L+ LVN+ LD   +    + L  +      +L ++K  ++    + N  ++VI
Sbjct: 296 MQRETKRLIRLVNENLDYEKIRNNQINLIKTNFNATPILQDLKSQLSQNAEKANDELEVI 355

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L  + ADR R  Q+   ++ NA+ F+  G  + +K  R     + SVK+NG  + +
Sbjct: 356 APDDLPIY-ADRDRFTQVMVNLVQNAIQFTHDGK-IEIKGERMVHATVLSVKDNGIGMSK 413

Query: 733 DMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISS 776
           D  K +F RF        R G    GLGL+IV S I  HGG V++ S
Sbjct: 414 DQIKYIFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVTVES 460


>gi|254518779|ref|ZP_05130835.1| predicted protein [Clostridium sp. 7_2_43FAA]
 gi|226912528|gb|EEH97729.1| predicted protein [Clostridium sp. 7_2_43FAA]
          Length = 686

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 29/261 (11%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++TD V  ++ L E    L+  +E    F   +++E R+PLT +   T LL       L
Sbjct: 411 IDITDKVSHQQELEE---ILKTQEE----FFSFIAHEFRTPLTVMSSTTQLLNLVYRKDL 463

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIA 659
             K   Y++ I+ S+   L LVN++LD+   DAG + +   NY  + ++  + E  +S A
Sbjct: 464 PEKVVGYIDKINLSTLQQLRLVNNLLDITRADAGYLNVNLRNYDIVSMSKAITESVRSFA 523

Query: 660 TKMHEN-----NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +   N     NI  K+I+         D ++  +I   +LSNA+ F+  G TV  K   
Sbjct: 524 VRKDINLEFTCNIDKKIIA--------VDDEKYERILLNLLSNAIKFTKNGKTV--KVEL 573

Query: 715 DNGDFI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
           D+ D     +VK+ G  IP++    +FNRF  V+N    +  G G+GL +V   IN  GG
Sbjct: 574 DSNDRFTNINVKDEGVGIPKEKQDVIFNRFGQVNNDLTRKSEGTGIGLCLVRLLINSMGG 633

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + ++S     +T    +P+K
Sbjct: 634 RIELTSQLGKGSTFTIILPNK 654


>gi|149913575|ref|ZP_01902108.1| multi-sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149812695|gb|EDM72524.1| multi-sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 652

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 9/220 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+PL  ++G  + L+ +   SL S Q + V  I+ S   L  ++ D+LD A +DA
Sbjct: 1   MSHELRTPLNGVLGNAEFLRET---SLTSSQRECVNTITKSGNALKLIIEDVLDFAQIDA 57

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKI 694
             +KLN     L+DL+ +    I        I + V     L  + + D  R  Q+   +
Sbjct: 58  TAIKLNNDEFDLSDLIFDAVSMIEIDAAGKGIELLVDCPTHLEYNLIGDGARFRQVLLNL 117

Query: 695 LSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           LSNA+ F+++G+  +   L       +   SV + G  I  D  +++F  F        R
Sbjct: 118 LSNAIKFTNEGTVTLEVKLVLQGSEAEVCCSVTDTGVGISADALETIFKPFSQVNESTTR 177

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  G GLGL+I    + + GG ++ SSS    +   CR+P
Sbjct: 178 KYGGTGLGLTISRELVRMMGGELTASSSLGDGSKFTCRVP 217


>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1767

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 126/247 (51%), Gaps = 12/247 (4%)

Query: 538  TMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +++ V++T+  + ++  L  K EA   A + K  F+ ++S+E+R+P+  IIG + L   
Sbjct: 1009 AVVSMVDMTELKLLSDELLVAKEEA-DAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQ 1067

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            ++L   + KQ  YVE I  +S  LL+++NDILD + ++AG + +      L+ +L ++  
Sbjct: 1068 TEL---DKKQKNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSD 1124

Query: 657  SIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILK 711
              + K     + +   ++         D  RL Q+   +++NA+ F+ +G  +    +++
Sbjct: 1125 MFSEKAAHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVE 1184

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
               D+    FSV+++G  +  +    +F  F        R+  G GLGL+I +  + L G
Sbjct: 1185 QQNDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMG 1244

Query: 770  GHVSISS 776
            G + + S
Sbjct: 1245 GTIGVES 1251


>gi|46123225|ref|XP_386166.1| hypothetical protein FG05990.1 [Gibberella zeae PH-1]
          Length = 1996

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 15/224 (6%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1326 LKEAMETKGRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQLDYTNTIQTSANSLI 1382

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL +       ++ +V + ++T      + +  + +  + ++V
Sbjct: 1383 MIINDILDLSKVDAGMMKLKHEWFHTRSMIEDVNELVSTMAIAKRLELNYLVEADVPAWV 1442

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGD----FIFSVKNNGSSIP 731
              D+ R+ Q+   +  NA+ F+++G       V +       D      FSV + G    
Sbjct: 1443 KGDKVRIRQVLLNVTGNAIKFTAEGEVFSRCRVYMAEGSSVADNEIMLEFSVIDTGRGFS 1502

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            ++    +F  F  +  +   Q  G GLGL I      LHGG+++
Sbjct: 1503 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGGNMT 1546


>gi|212712306|ref|ZP_03320434.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
 gi|212685052|gb|EEB44580.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
          Length = 928

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 135/260 (51%), Gaps = 24/260 (9%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++++  V+ E++L +  +A  +A++ K+ F+  VS+ELR+PL  IIG  +LL+  +  
Sbjct: 425 VLIDISIRVQMEKSLQDVADAAEQANQAKSMFLATVSHELRTPLYGIIGNIELLQRYE-- 482

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ K  + V  +  SS++LL +++DILD + +++  +K+       N L N   +++  
Sbjct: 483 -LSDKAVRLVSTMDNSSSLLLQIISDILDFSKIESKQLKIE------NKLFN--CRNVFA 533

Query: 661 KMHENNIRIKVISDGKLGSFV---------ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +  N + +       L S++         +D  RL Q+ S I++N++ F+  G  V+L 
Sbjct: 534 YVLANYVPLATKKQVSLYSYIEPNIPDLMLSDPVRLQQVISNIVNNSIKFTDSG-FVMLH 592

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             +D       VK++G  +   +   +F+ F  V + + G  +G GLGL+I E  INL  
Sbjct: 593 VWKDENYLKIEVKDSGIGMTPAVVMQLFDPFFQVYDQNNGH-KGTGLGLAICEKLINLMD 651

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +++ S     +    RIP
Sbjct: 652 GDIAVDSQAGLGSRFTIRIP 671


>gi|167761798|ref|ZP_02433925.1| hypothetical protein BACSTE_00139 [Bacteroides stercoris ATCC
           43183]
 gi|167700304|gb|EDS16883.1| hypothetical protein BACSTE_00139 [Bacteroides stercoris ATCC
           43183]
          Length = 479

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 120/215 (55%), Gaps = 2/215 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D  K +F+  +S+EL++P++ I+    LL+ +++G+LN +Q Q  + I  ++  LL 
Sbjct: 252 KELDTAKTTFISTISHELKTPISAILMSLQLLEDNRVGALNEEQEQLSKSIRENADRLLG 311

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           +  ++L++  V+AG +++        +L+    ++   +  + NI+I+V   + K+    
Sbjct: 312 ITGELLNMTQVEAGKLQMIPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKMPKLF 371

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +++  + + +LSNA+ +S +   VI+ A +++      V++ G  I     +S+F+R
Sbjct: 372 VDSEKIAWVLTNLLSNAIRYSKENGHVIIGARQEDNSVELYVQDFGKGIDPRYHQSIFDR 431

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +       + +G GLGLSI + F+  HGG +++ S
Sbjct: 432 YF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVQS 465


>gi|166710560|ref|ZP_02241767.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 619

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 164/372 (44%), Gaps = 31/372 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + E + +   + RI L NPAF  L+  EE     G  +  +       + ++      A 
Sbjct: 249 VREPIVLLDANQRIVLHNPAFAELYGLEER----GNELMALEDVGEGVWRDTQIHQRLAD 304

Query: 503 IIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAE 552
           ++        ++ E++   G L  +   ++    +PLP+       ++T  +++    A+
Sbjct: 305 VLLRGRELWDYEHEQRGADGVLRTM---LINARRMPLPDTTDEDVVLMTVSDISLQKTAQ 361

Query: 553 RALTEKNEALR-KADEIKN------SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             + E N  +  K +++        +F   VS++LR+PL ++ GF+D L      + + K
Sbjct: 362 MRIQELNRQMEGKVEQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEK 421

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y+E IS+S+  + +L++D+L  + +  G ++L    + +  L+ E +  + + +   
Sbjct: 422 SRHYMEVISSSARRMASLIDDLLVYSRLGRGALRLQ--AVDMQSLVAETRAILDSNVQSE 479

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIF 721
           N   +V      L   VAD   + Q++  +L NA+ +S+K       +      +G   F
Sbjct: 480 NTGHRVEWHIAPLPVLVADENMMRQLWMNLLGNAVKYSAKREVAKVEVTYTPMADGGHQF 539

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780
           SV++NG+    +    +F  F       +  G G+GL+ V   +  HGG V      DEG
Sbjct: 540 SVRDNGAGFDMEYSAKLFGVFQRLHKASEYAGTGIGLASVRRVLTRHGGRVWAEGIVDEG 599

Query: 781 VTTINCRIPSKE 792
            T      P++E
Sbjct: 600 ATFYFVLPPARE 611


>gi|254250800|ref|ZP_04944119.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124879934|gb|EAY67290.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 1468

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 142/312 (45%), Gaps = 34/312 (10%)

Query: 489  RYYNESDGWDLF-AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R++   DG  +F + ++T   D   S  G  +++ D                +T    +D
Sbjct: 1043 RWHRTKDGRRIFCSGVVTPISD--TSFNGFAKIVRD----------------MTLRKQSD 1084

Query: 548  SVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIG-----FTDLLKTSKL 599
                E AL  +  A  +A   +++K+ F+  +S+ELR PL N+IG        L +T  +
Sbjct: 1085 DANRE-ALAREQAAREQALSSNQLKDEFIAVLSHELRHPL-NLIGVKSEMLPRLPETRDI 1142

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             ++        + + A + I    ++D+LDL+ +  G + L  + + L  +L  +  +  
Sbjct: 1143 PAVREAADSIRQAVRAQAQI----IDDLLDLSRIQTGKLALELNRVDLTAMLRSIADTCE 1198

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              +H   + +K     +    +AD  R  QIF  ++SNA+ ++     ++++ A +    
Sbjct: 1199 RDVHARGLVLKTELPTEPAIALADPVRCEQIFWNLMSNALKYTQSHGEIVVRLAHEGRML 1258

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
               V ++G  I  D    VF+ F        R G+G+GL++V   +++HGG ++ +S   
Sbjct: 1259 RVDVVDDGQGIDGDTLPHVFDMFRQAPRDRTRGGLGIGLALVRQLVDMHGGRIAAASDGP 1318

Query: 780  GV-TTINCRIPS 790
            G  TT+   +P+
Sbjct: 1319 GAGTTMTVWLPA 1330


>gi|118470188|ref|YP_889240.1| sensor histidine kinase [Mycobacterium smegmatis str. MC2 155]
 gi|118171475|gb|ABK72371.1| sensor histidine kinase [Mycobacterium smegmatis str. MC2 155]
          Length = 527

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 19/237 (8%)

Query: 563 RKADEIK-NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           R A E +   FV   S+ELR+PL  I G+T+L +  K G L    +  +  + + ++ + 
Sbjct: 297 RHASETRVRQFVADASHELRTPLAAIRGYTELAQ-RKRGELPDDVAHAMSRVESETSRMT 355

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIK---VISDGK 676
            LV D+L LA +DAG   L    + L+ L+ +      +A   H+ ++ +    V+ DG 
Sbjct: 356 QLVEDMLLLARLDAG-RPLERDRVELSRLVVDTVSDAHVAGPQHKWSLDLPEDAVVIDG- 413

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMC 735
                 D  RL Q+ + +L+NA   +  G++V +  + D  G    +V ++G  I  ++ 
Sbjct: 414 ------DEARLHQVMANLLANARTHTPPGTSVTVALSADAEGWVTVAVTDDGPGIAPELL 467

Query: 736 KSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             VF RF   ++ R +R G  GLGL+IV + +  HGG + ++S   G T    R+P 
Sbjct: 468 PDVFERFARGDSSRSRREGSTGLGLAIVAAVVKAHGGVIDVTSR-PGETRFVVRLPG 523


>gi|83310944|ref|YP_421208.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945785|dbj|BAE50649.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 525

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 21/232 (9%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+AD I++ F  HVS+E ++PL  I G  +LL+          + ++++ + + ++ L  
Sbjct: 310 RRADYIRD-FAAHVSHEFKTPLATITGTVELLREHLTDMTPEDRERFLDNLESEASRLSR 368

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG----KLG 678
           LV  +LDLA  D  +M          D        IA       + I++++DG    ++G
Sbjct: 369 LVQRLLDLARAD--VMPAG------QDGCCRPLAVIAGLAERAGLTIEIMADGDMMVRMG 420

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +     + +  +F  +L NA      GS V L   RD+ + +  + ++G  I       V
Sbjct: 421 A-----EAMETVFGNLLDNACRHGGPGSRVTLALRRDDDEVVLILADDGPGISPANAGRV 475

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  F + A   +  G GLGLSIV S +  HGG +++  S+ G      R+PS
Sbjct: 476 FTPFFTTAR--KEGGTGLGLSIVRSLVTAHGGAIALRPSERG-ARFEIRLPS 524


>gi|66768644|ref|YP_243406.1| RpfC protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|7688441|emb|CAB89845.1| fused two-component sensor-regulator protein [Xanthomonas
           campestris]
 gi|66573976|gb|AAY49386.1| RpfC protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 726

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +     
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGTQ 289

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
           ++D        D   L Q+   ++ NA+ F+  G  V+L+  R +G         F V++
Sbjct: 290 VADDVPDLLKGDTAHLRQVLLNLVGNAVKFTEHGH-VLLRVTRVSGSAEDAVRLRFDVED 348

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
            G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG + 
Sbjct: 349 TGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIG 398


>gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris]
          Length = 1364

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A R A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +
Sbjct: 675 PGAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSL 734

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
               + + V    +   + + D  R+ Q+   ++ NA+ F+ +G  V+      +GD   
Sbjct: 735 SAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNK 794

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG + +
Sbjct: 795 IKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEV 854

Query: 775 SS 776
            S
Sbjct: 855 ES 856


>gi|149184283|ref|ZP_01862601.1| GAF sensor signal transduction histidine kinase [Erythrobacter sp.
           SD-21]
 gi|148831603|gb|EDL50036.1| GAF sensor signal transduction histidine kinase [Erythrobacter sp.
           SD-21]
          Length = 355

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 120/261 (45%), Gaps = 15/261 (5%)

Query: 538 TMLTFVNVTDSVRAERALTE---KNEALRKADE----IKNSFVQHVSYELRSPLTNIIGF 590
           T LT     D    ER+L E   + EA  KA +    ++  F+  + ++LR+PL  I   
Sbjct: 90  TRLTMFKAVDRRTYERSLLEAQLRAEAESKAQQEAAVVREQFIAVLGHDLRNPLAAIAAG 149

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA--TVDAGIMKLNYSTIVLN 648
             +L+ S+   L+ +    +  I  S      LV+D LDLA  T+  G++        L 
Sbjct: 150 GRMLRRSE--ELSERGELVLSEIEMSVERASALVDDTLDLARGTLGGGLVLERDPEANLL 207

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +L +V   I     E  +   +  +G   S   DR+R+ Q+ S +LSNA+   S    V
Sbjct: 208 PVLEQVIAEIRAISPEQPVDAIIEIEG---SVSCDRRRIAQLASNLLSNAVTHGSIEQPV 264

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
             +A  +N +F+ SV N G +IP+     +F  F     R  R G+GLGL IV      H
Sbjct: 265 RFEARTENSEFVLSVSNAGEAIPQKALDRLFQPFFRAETRPSRNGLGLGLFIVSEVAKAH 324

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G + +SS+D   T    R+P
Sbjct: 325 DGTIDVSSTDR-ETRFTFRMP 344


>gi|197116409|ref|YP_002136836.1| HAMP/PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197085769|gb|ACH37040.1| sensor histidine kinase, HAMP and PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 754

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K  F+  VS+EL++PLT+I G   LL T +   L   + Q +     ++  L+ L
Sbjct: 519 QVDRMKTEFISTVSHELKTPLTSIKGSLQLLLT-RSKWLTDTERQLLTVCFRNTQRLIRL 577

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +++ILD++ +++G M  N+  + + +L     + I +      I I       L     D
Sbjct: 578 ISEILDISGIESGGMIFNFKPLCIGELAVYAVEEIKSLAMGREITIVNTVGEHLPMVFGD 637

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
             RL+Q+ + +LSNA+ FS +G  V++ A ++    + SV + G  I       +F +F 
Sbjct: 638 SDRLIQVMTNLLSNAVKFSPEGKVVMVTAEQEGNYVVVSVADRGRVIQWSDRDKLFKKFQ 697

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +  R +  G GLGL+I +  +  H G +  +++ E   T +  +P
Sbjct: 698 QIESTERNKIGGTGLGLAICKEIVERHHGRIFYTAAKEYGNTFSFTVP 745


>gi|160871851|ref|ZP_02061983.1| sensory box histidine kinase/response regulator [Rickettsiella
           grylli]
 gi|159120650|gb|EDP45988.1| sensory box histidine kinase/response regulator [Rickettsiella
           grylli]
          Length = 374

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 22/242 (9%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+T   +AERA              K  F+ +++++LR+PL  IIG   + + ++   L
Sbjct: 114 INITGKKQAERA--------------KQQFMMNMAHDLRTPLAGIIGIASI-QANQNKCL 158

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q QY  +I  +   LL L+N ++D+  ++     LN+  I L+ L+ E+   +   +
Sbjct: 159 DDQQ-QYGRWIMEAGNQLLELLNAVMDVMALEEREDALNHDRIELSHLMKELTDLMQPSI 217

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
               +  +   D KL +  +D  +L +I   ++SNA+ F+ KG+  +    L     +  
Sbjct: 218 VAKGLHSEWQFDPKLPAITSDVMKLKRILLNLISNAIKFTEKGTVRVAIHLLGINDKHAR 277

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               +K+ G  IP D  + +F++F     ++RG   G G+GL +V+  ++L GG +++SS
Sbjct: 278 IEIQIKDTGIGIPSDQHEKIFDQFYRAHPSYRGVYSGYGVGLYLVKKAVDLLGGKIAVSS 337

Query: 777 SD 778
            +
Sbjct: 338 EE 339


>gi|21231304|ref|NP_637221.1| RpfC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|21112958|gb|AAM41145.1| RpfC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
          Length = 726

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +     
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGTQ 289

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
           ++D        D   L Q+   ++ NA+ F+  G  V+L+  R +G         F V++
Sbjct: 290 VADDVPDLLKGDTAHLRQVLLNLVGNAVKFTEHGH-VLLRVTRVSGSAEDAVRLRFDVED 348

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
            G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG + 
Sbjct: 349 TGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIG 398


>gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51]
 gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 896

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 126/260 (48%), Gaps = 18/260 (6%)

Query: 532 PLPNAQTMLTFV-NVTDSV-------RAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           PL  ++ MLT + ++T+         RAE    +  E    A+  K+ F+ ++S+E+R+P
Sbjct: 355 PLNGSKVMLTLLRDITERKQIEQERKRAEAEFQQAKEKAEAANRAKSEFLANMSHEIRTP 414

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  IIG  DL   + L SL   Q + ++     +  L  ++NDILD + ++AG + +   
Sbjct: 415 INGIIGMIDL---TLLTSLEKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGKLTVEEI 471

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
              L +++ ++ ++ + +     + +       L  +   D +R+ Q+ + +LSNA+ F+
Sbjct: 472 EFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLSNALKFT 531

Query: 703 SKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
            +G   +    L+   D  D  F+V + G  I E+    +F  F  V  +   +  G GL
Sbjct: 532 ERGEVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRKYGGTGL 591

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL+I    + + GG + + S
Sbjct: 592 GLAISRKLVEMMGGRIWVES 611


>gi|319793726|ref|YP_004155366.1| signal transduction histidine kinase with cheb and cher activity
            [Variovorax paradoxus EPS]
 gi|315596189|gb|ADU37255.1| signal transduction histidine kinase with CheB and CheR activity
            [Variovorax paradoxus EPS]
          Length = 1556

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 154/315 (48%), Gaps = 23/315 (7%)

Query: 485  ATCSRYYNESDGWDLFA--AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            A   R +   DG   +A  A++   D E +S+ G +++L D   + +      AQ  L  
Sbjct: 1105 AADDRLHQRKDGSRFWASGALMPMHDGEGRSI-GLVKVLRDQSKQRA------AQQELE- 1156

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +  + + A RA      AL  AD  K+ F+  +S+ELR+PL +I G  +LL    L + 
Sbjct: 1157 QSRGELLSALRANEAARRALETADAAKDRFLAVLSHELRNPLASISGAAELLAPESLATQ 1216

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSI 658
            +  Q++    I   ++++  ++ ++LD++++  G + L+   I    + +  L  V+  I
Sbjct: 1217 D--QARAARVIRRQASVMKVMLGELLDVSSLRQGRLALSRERISAQAIADAALETVRPLI 1274

Query: 659  ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                H  ++    I++ ++ +  AD  RL Q+ S +LSNA  ++     + L    +  D
Sbjct: 1275 EHGRHTLDLD---IAEEEI-ALDADPIRLSQVLSNLLSNAAKYTPAPGRIALSVRAEARD 1330

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             +F V ++G  +  +  +++F  FV + H   R   G+G+GL++V + + LHGG V+  S
Sbjct: 1331 AVFEVTDDGIGMEPESIETMFEMFVQSEHAHARANGGLGIGLALVRNIVELHGGTVTGHS 1390

Query: 777  SDEGV-TTINCRIPS 790
               G       RIP+
Sbjct: 1391 EGLGRGCRFTVRIPT 1405


>gi|239905687|ref|YP_002952426.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795551|dbj|BAH74540.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 705

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 128/258 (49%), Gaps = 17/258 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T+  + E  L    +    A++ K+ F+ ++S+E+R+PL  I+G   LL++++    N
Sbjct: 300 NITEKKKFESELISSKKIADAANKAKSEFLANMSHEIRTPLNGILGMLQLLESTQ---TN 356

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +QS+Y++    S   L  L++ ILDL+ ++ G   L      +  L++++  +  T++ 
Sbjct: 357 HQQSEYIDIALNSGRNLNKLISGILDLSRIEQGNTTLESHGFNIKHLIDDIVNTFITELS 416

Query: 664 ENNIRI-----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              + I     K++ D   G    D  RL QI   I+ N++ F+  GS  I   +  +G+
Sbjct: 417 SKKLLITTTIAKIMPDVIYG----DSGRLRQIIFNIVGNSIKFTPFGSVAISIDSLTSGN 472

Query: 719 FI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            I     + + G  IPED    +F  F        R+  GVGLGLSIV+  +    G ++
Sbjct: 473 TIHVFIEISDTGIGIPEDKLDDIFYPFTQLDGSLTRKYGGVGLGLSIVKKQLLAMEGSIT 532

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S++ G T     IP K
Sbjct: 533 VESNESGGTKTCIAIPFK 550


>gi|255281350|ref|ZP_05345905.1| sensor protein VanS [Bryantella formatexigens DSM 14469]
 gi|255268307|gb|EET61512.1| sensor protein VanS [Bryantella formatexigens DSM 14469]
          Length = 361

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 126/240 (52%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +  + + L++    KN  + +++++L++PLT++IG+  LL+ +      +++++YV    
Sbjct: 125 IQRREQTLKEEVSRKNDLIVYLAHDLKTPLTSVIGYLSLLEEAP-DMPPAQKAKYVHISL 183

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--KMHENNIRIKVI 672
             +  L  L+N+  ++   +   + L   +I ++ +L ++        + H N  +++  
Sbjct: 184 EKALRLEQLINEFFEITRYNLQQIVLEKESIDISYMLIQMADEFYPILQAHGNTAQVEA- 242

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             G+  +   D  +L ++F+ IL NA+ +S + + V + A   +G  I    N+G +IP+
Sbjct: 243 --GEGLTVYGDSMKLARVFNNILKNAVAYSYRDTPVEISAQEQDGRVIIRFTNHGRTIPK 300

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +++F +F  +  A      G GLGL+I    + LHGG V+ +S++E +TT    +P+
Sbjct: 301 QKLETIFEKFFRLDGARATNTGGAGLGLAIAREIVELHGGTVTAASAEE-LTTFTVTLPA 359


>gi|225026156|ref|ZP_03715348.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353]
 gi|224956516|gb|EEG37725.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353]
          Length = 958

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 136/271 (50%), Gaps = 27/271 (9%)

Query: 537 QTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +L  ++VT   +AE    +AL E   +   A+  K  F+ ++S+++R+P+  I+G T 
Sbjct: 413 KVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTA 472

Query: 593 LLKTSKLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +      G+    Q + +E    I+ SS  LL L+N++LD+A +++G M L      L++
Sbjct: 473 I-----AGANVESQDRVIECLGKITESSRHLLGLINEVLDMACIESGKMTLAQEDFNLSE 527

Query: 650 LLNEV----KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++ +    K  +    H  +I I  I    +     D  R+ Q+F  ++SNA+ ++  G
Sbjct: 528 LVDNLITLTKPVLDEHKHNFDIHINHIEHEDV---CGDSLRIQQVFVNLMSNAIKYTPDG 584

Query: 706 STVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLG 757
             +I           + G + F++++NG  +  +  K +F+ F  ++ HR  R +G GLG
Sbjct: 585 GNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTGLG 644

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++I  + +NL  G + + S+    T I   I
Sbjct: 645 MAISRNIVNLMNGTIKVDSTLHKGTKITVTI 675


>gi|163793169|ref|ZP_02187145.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159181815|gb|EDP66327.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 430

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 6/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613
           L+   E    A+ +K     ++ +ELR+PL  IIGF   L     G L N +   Y + I
Sbjct: 179 LSAVREGAEMAERLKRESFANLGHELRTPLNAIIGFAQSLDAELWGPLGNPRYRDYAKAI 238

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + S   L  L+ DILDL+  DAGI++L+ +T+ +   +   ++ +      N + +    
Sbjct: 239 ADSGQHLYVLIQDILDLSRHDAGILELDETTVDVAAAVRTCRKMLGGSAASNGVSLATTV 298

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSI-P 731
             +      D  +L QI   + +NA+ F+  G  V + A R ++G+    V++ G  + P
Sbjct: 299 PDEGLWVTGDSTKLRQIVINLAANAIRFTPAGGRVTIAACRLESGETELRVEDTGIGLDP 358

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED+ ++    FV  +    R   G GLGL + +    LHGG + I S     T +   +P
Sbjct: 359 EDIPRA-LEPFVQVSRDRARESGGAGLGLPLSKRLTELHGGVLEIHSRRGTGTVVRIVLP 417

Query: 790 S 790
           +
Sbjct: 418 A 418


>gi|29832107|ref|NP_826741.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29609225|dbj|BAC73276.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1383

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 16/255 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R+   L EK   L  + + K+ F+ ++S+ELR+PL +++    LL  +  G L+ ++ Q+
Sbjct: 919  RSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSDQEVQF 978

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +      +  +  
Sbjct: 979  ATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTIDRGLAF 1038

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----------DNG 717
             V + +       +D QRL QI   +LSNA+ F++ G  V L+  R           D+ 
Sbjct: 1039 DVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTASGR-VELRVGRVKDPEHRYTREDSE 1097

Query: 718  DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            + I F+V + G  I  +    +F  F        R+  G GLGLSI      L GG +  
Sbjct: 1098 EVIAFAVSDTGIGIAPEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIIA 1157

Query: 775  SSSDEGVTTINCRIP 789
             S     +T    +P
Sbjct: 1158 ESVPGKGSTFTLYVP 1172


>gi|92116807|ref|YP_576536.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
            hamburgensis X14]
 gi|91799701|gb|ABE62076.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
            hamburgensis X14]
          Length = 1031

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 169/370 (45%), Gaps = 40/370 (10%)

Query: 437  GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            G  +D  +EG+ +F   GRI   N +  +L+    + L+      N+A     +  ES+G
Sbjct: 667  GAILDTTAEGILMFDDGGRITACNRSAEALFGHSGDSLT----QFNLA---DLFAPESEG 719

Query: 497  W--DLFAAII----TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT--------F 542
               D    I+     S  D  + + G        V E  +IPL  + TM          F
Sbjct: 720  AVRDYLNGIVGNGVASLLDHGREVLG-------RVREGGLIPL--SMTMGRTQADGPNFF 770

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNS---FVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                D  +A++  TE ++A R+AD   N+    +  +S+E+R+PL  IIGF +++   K 
Sbjct: 771  AVFRDLSQAKKIETELSQARRQADRAANAKADVLARISHEIRTPLNAIIGFAEVMTDEKF 830

Query: 600  GSLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            G+L +++  YVEY   I AS   ++  ++D+LDL+ ++ G + L +    LN+L+ +   
Sbjct: 831  GALGNER--YVEYMKDIRASGERIIAFIDDLLDLSRIETGKLDLAFVNQNLNELVEQCVA 888

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RD 715
             +  + +   I I+      L   VAD   L QI   ++ N++  ++ G  VI+  A  D
Sbjct: 889  VMQPQANRERIIIRTSLAHTLPPIVADAHALRQIALNLIGNSIHLANAGGQVIVSTALND 948

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSI 774
             GD    V++ G  + E+   +    F + A   Q     G+ LS+ ++ +  +    +I
Sbjct: 949  FGDVALRVRDTGHGLNENELAAATEPFRTPAPSDQASESAGVSLSLTKALVEANRAQFNI 1008

Query: 775  SSSDEGVTTI 784
             +     T I
Sbjct: 1009 RTGPHSGTLI 1018


>gi|16127449|ref|NP_422013.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221236261|ref|YP_002518698.1| two-component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|13424901|gb|AAK25181.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220965434|gb|ACL96790.1| two-component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 657

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 156/354 (44%), Gaps = 39/354 (11%)

Query: 446 GVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           G   FG  G  I L+N   R L +  E RLS   H   +          +D  D+F ++I
Sbjct: 182 GALFFGAAGMAILLANSLARRLAQPME-RLSEAMHETAVGGRFKALEETADD-DVFRSLI 239

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            SF+     L   LE  +D  L  +         M   V   D   A             
Sbjct: 240 ASFN----HLVARLEC-NDQDLRGA---------MAELVKARDDANA------------- 272

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ +K+ F+ ++S+E+R+PL  ++   D++   +L  +   Q + +  I  S  +LL ++
Sbjct: 273 ANVLKSHFLANMSHEIRTPLNGVLAMADVMAMDQLSDI---QRERLAVIRESGAVLLGVL 329

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LDL+ ++AG +++      +  L   ++++   +     +  +V ++    G +  D
Sbjct: 330 NDVLDLSKIEAGRLEIQDRPFDIAQLAQSIRETFVPQARAKGLAFEVGVAPEAQGLWRGD 389

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
             RL QI   ++SNA+ F+  G+  +   +A D       V + G  I  ++   +F++F
Sbjct: 390 ADRLRQILGNLISNALKFTLDGAVAVRFASAEDGSGLRIDVADTGIGISPEILPRLFDKF 449

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT-TINCRIPSKE 792
           V       RR  G GLGL+I      +  G + + S +  G T T+   +P +E
Sbjct: 450 VQADSTTTRRFGGSGLGLAICRELAAMMNGSIKVQSREGRGSTFTVLVGLPREE 503


>gi|83855337|ref|ZP_00948867.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83843180|gb|EAP82347.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 713

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 119/241 (49%), Gaps = 11/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T++V  +R L +       A+  K+ F+  +S+E+R+P+  I+G T++L  +   +L 
Sbjct: 191 DITETVEYQRKLVDARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDT---ALT 247

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  YV+ I  S+  LL ++ND+LD + ++A  + ++ +   L  +  EV   +     
Sbjct: 248 QDQRLYVDTIKTSAEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQPLAV 307

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNG 717
           +  + + +  D  L    V D  R+ Q+ + ++ NA+ F+  G     +T +  A   N 
Sbjct: 308 QKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFTQNGHILIRATGLPDAGAGNV 367

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               S+++ G  I  DM + +   F   S+       G GLGL+I +  + L GG + ++
Sbjct: 368 LIKISIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQLMGGEIWVT 427

Query: 776 S 776
           S
Sbjct: 428 S 428


>gi|330831800|ref|XP_003291944.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum]
 gi|325077858|gb|EGC31544.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum]
          Length = 1468

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 16/230 (6%)

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            A  +A  +K  F+ ++S+ELR+P   I+G + LL  S   +L   Q   V+ I  S+  L
Sbjct: 854  AAIEATRLKTQFITNISHELRTPCHGIVGMSQLLLDS---NLTPTQRDNVDSIKRSTDSL 910

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK---- 676
            ++L+NDILD + ++ G + L   +  L  ++ EV +S  + ++   I + + + G+    
Sbjct: 911  ISLINDILDFSKLEYGKVTLENESFELLPMIEEVLESQTSVVNHKGIDL-IFTMGRDYPV 969

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFI---FSVKNNGSSIP 731
                  DR  L ++   ++ NA  F+  G  V+L+ + D  +GD I   F+VK++G  IP
Sbjct: 970  PPVIFGDRNSLKKVLLNLVGNATKFTESG-FVLLEISTDYVSGDQISLRFTVKDSGIGIP 1028

Query: 732  EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            ED  + +F  F  V  +   +  G GLGLS  +  + L GG++ + S D+
Sbjct: 1029 EDKIEQIFIPFGQVDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQ 1078


>gi|168334601|ref|ZP_02692754.1| multi-sensor signal transduction histidine kinase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 609

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 123/229 (53%), Gaps = 11/229 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           +K D+++  FV +VS+ELR+PLT I  +T+ L +   G+++ K++   ++  +   +  +
Sbjct: 371 QKLDQMRKDFVANVSHELRTPLTTIKTYTETLIS---GAIDEKETALDFLSVMEKETDRM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVK-QSIATKMHENNIRIKVISDGKLG 678
             LV+D+L+L+ +D   M+LN   + + + LL+ ++ Q+I  K   + I++   +  K  
Sbjct: 428 TTLVHDLLELSKIDNKQMQLNIQVMDIYSLLLDTIRAQAIQAKCKHHQIKLSY-NKNKEY 486

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  R+ Q+F  ILSNA+ ++     + +  + ++   +  VK+ G  + +   + +
Sbjct: 487 LIEGDPARIGQVFHNILSNAIKYTEDNGQIKINLSSNDQQVVIKVKDTGIGMSKKDLERI 546

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           F RF     A   +  G GLGLSI +  + LHGG + + S+   G T I
Sbjct: 547 FERFYRADKARSRKMGGTGLGLSIAKEMVELHGGSIKMESALGHGTTVI 595


>gi|149927944|ref|ZP_01916194.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
 gi|149823383|gb|EDM82616.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
          Length = 755

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 127/250 (50%), Gaps = 23/250 (9%)

Query: 551 AERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           A   L +KN AL        K++++K+ FV ++S+E+R+PL  I+G T+++ ++   +L 
Sbjct: 239 ASVTLRKKNRALEAAKLKADKSNDLKSQFVANMSHEIRTPLNGILGLTEIILSN--SALA 296

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K  + +E I  S+  LL +VNDILD + +DA  + ++     L   +  + + +++   
Sbjct: 297 EKPRRNLELIQLSAEHLLRVVNDILDFSKIDANCLDMDPQPFELRPNVQAMVKMVSSAYA 356

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAAR 714
           + ++   +  D  + +++  D  R++Q+ + +LSNA+ F+  G   +         K  +
Sbjct: 357 KPHVATVLDIDPDVPNYLFGDCPRIMQVLNNLLSNALKFTQHGQVSLTIKTKQGTEKTQK 416

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGH 771
                 F+V++ G  I E     +F  F S A  G  R   G GLGL+I +  + L    
Sbjct: 417 SKSKIHFAVRDTGMGISESARTEIFKAF-SQAEPGTARKYGGTGLGLTITQRLLELMNSR 475

Query: 772 VSISSSDEGV 781
           + +  S+EGV
Sbjct: 476 IHL-WSEEGV 484


>gi|254229567|ref|ZP_04922980.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262394235|ref|YP_003286089.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|151937940|gb|EDN56785.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262337829|gb|ACY51624.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 573

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 138/275 (50%), Gaps = 26/275 (9%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I +   + +   V V  +      L +  E    A+  K+ F+  +S+E+R+PL
Sbjct: 176 LIERAVIDIETKEKLQRIVEVRTT-----QLAKAREEAELANRSKSEFLAMMSHEIRTPL 230

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+LK S   +L+ +Q   +  +  S+ +LL +++DILDL+ +++G  +LN   
Sbjct: 231 NSVLGMLDILKQS---TLSEEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQW 287

Query: 645 IVLND----LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           + L D    ++++ KQ    K  +  +   V +D +   F  D  RL QI   ++ NA+ 
Sbjct: 288 VNLRDTVTFVISQQKQIAKKKSLQFKLNCMVTTDKQ---FWIDSTRLSQILFNLIGNAIK 344

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GV 754
           F+ +G  V +  +  + + + S+ + G  I +   + +F  F    H+G R       G 
Sbjct: 345 FTDEGE-VKVSVSEQDTELVISISDTGIGISKAKQEHLFTAF----HQGDRSITRRFGGT 399

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I +  + +  G + + S +   +T   +IP
Sbjct: 400 GLGLAITKHLVEMMRGKIIVKSDEHVGSTFTIKIP 434


>gi|119716209|ref|YP_923174.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
 gi|119536870|gb|ABL81487.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
          Length = 1072

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 12/252 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  +    V +  RA+R L +  +    A   K+ F+  +S+E+R+PL  +IG  DLL  
Sbjct: 388 QVGVQLGRVAERERAQRELADARDVAMAASRQKSEFLATMSHEIRTPLNGVIGLNDLLLR 447

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L+  Q +    +  +S  LL ++NDILD + ++AG ++L      +  + ++V  
Sbjct: 448 TP---LDPDQLRLASGVQVASRALLGVINDILDFSKIEAGKLELERLDFEVRGVFDQVAS 504

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +        + + V    ++   +  D  RL Q+ + + SNA+ F+ +G  V ++A   
Sbjct: 505 LLGEAARAKGLELIVSCHSEVPEVLRGDPTRLAQVITNLGSNAVKFTEEGE-VFIRATAS 563

Query: 716 NGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            G         SV + G  +P +    +F  F+       RR  G GLGL+I    +   
Sbjct: 564 PGPAGRTRLHVSVTDTGVGVPANDVGELFEAFIQADASTTRRFGGTGLGLAISREIVQAL 623

Query: 769 GGHVSISSSDEG 780
           GG + +  +  G
Sbjct: 624 GGEIGMEPNPGG 635


>gi|332527595|ref|ZP_08403642.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111998|gb|EGJ11975.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 1425

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 16/248 (6%)

Query: 543 VNVTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           ++++   RAE  L   N  L         A   K++F+ ++S+E+R+P+  IIG   L+ 
Sbjct: 746 IDISAQKRAEAGLQRANAELVVERDRAEAASRSKSAFLANISHEIRTPMNAIIGLAHLML 805

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +    + + +  I   +  LL ++ND+LDL+ ++AG ++L      L+ LL    
Sbjct: 806 RD---AHADTERERLLKIRGQAQHLLQILNDVLDLSKIEAGRLELEAIPFSLDTLLARAF 862

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           Q++AT+     + + + +D      V D  RLLQ    +LSNA+ F+ KG   +     D
Sbjct: 863 QTVATEAQRKGLELVLDTDAVPDRLVGDPTRLLQALLNLLSNAVKFTEKGWVRLQARQAD 922

Query: 716 NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           + +      F+V + G  IP D   ++F  F        RR  G GLGL++     ++ G
Sbjct: 923 HAEGRVLLRFTVTDTGVGIPPDRLGALFQAFEQVDSSTSRRHGGTGLGLALTRHMASMMG 982

Query: 770 GHVSISSS 777
           G V   S+
Sbjct: 983 GEVGADST 990


>gi|295114872|emb|CBL35719.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SM4/1]
          Length = 596

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 20/264 (7%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+LT  + T  +  ++ L    +   KA+  K+ F+  +S+E+R+P+  IIG   ++   
Sbjct: 331 TVLT--DQTQILSTQKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGMG-MIAMQ 387

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            LG  +S+    +  I+ SS  LL L+ND+LD++ +++G +++          L  V   
Sbjct: 388 NLGD-SSRVEDCIRKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLFLESVSNV 446

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           I+ +  +  +   VI  G +      D  R+ QI   +LSNA+ F+ +G +++L+ A+ +
Sbjct: 447 ISGQARDKGLNFDVIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKMD 506

Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFI 765
            D       F V + G  I E   + +F  F      +S+ +     G GLGLSI   F 
Sbjct: 507 EDSTTVWLKFEVSDTGCGIEEKNYEKIFMPFEQEHEDISHVY----GGTGLGLSISRRFA 562

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            L  G +++SS     +T    +P
Sbjct: 563 ELMDGRLTVSSQVGKGSTFTLTMP 586


>gi|282895906|ref|ZP_06303946.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
 gi|281199151|gb|EFA74020.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
          Length = 428

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 113/229 (49%), Gaps = 2/229 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + +  +N  L +   +K+ F+  +S+ELR+P+  IIGF  +L   K   L+S Q+  
Sbjct: 154 RQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSSVQTDI 213

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  ++  L  L+N++LD + +D+G + L      L+ ++N     I + +    + +
Sbjct: 214 LKRILNNAKNLSMLLNEVLDFSKIDSGRLALKPEIFDLSKVVNHAVSEIRSLVEAKKLSL 273

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V  + +      D  R+ QI   +LSNA+ F+ +G   +            S+++ G  
Sbjct: 274 SVEIELENTLVFNDPMRVSQILINLLSNAIKFTERGCIWVRVTEPSKNRIAISIRDTGIG 333

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           I    C+ +F  F  V      +  G+GLGL+I++S + + GG + + S
Sbjct: 334 ISSQDCEHIFEAFRQVDQGISRKYPGMGLGLAIIDSLVKIMGGKIILES 382


>gi|283796048|ref|ZP_06345201.1| PAS domain protein [Clostridium sp. M62/1]
 gi|291076258|gb|EFE13622.1| PAS domain protein [Clostridium sp. M62/1]
          Length = 889

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 18/238 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+  K+ F+  +S+E+R+P+  IIG   ++    LG  +S+    +  I+ SS  LL L
Sbjct: 355 KANRAKSEFLSRMSHEIRTPMNGIIGMG-MIAMQNLGD-SSRVEDCIRKINLSSRHLLTL 412

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVA 682
           +ND+LD++ +++G +++          L  V   I+ +  +  +   VI  G +      
Sbjct: 413 INDVLDMSKIESGRIEIKRDVFDFRLFLESVSNVISGQARDKGLNFDVIFLGDMEEELFG 472

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKS 737
           D  R+ QI   +LSNA+ F+ +G +++L+ A+ + D       F V + G  I E   + 
Sbjct: 473 DALRVNQILMNLLSNALKFTPEGGSIVLRIAKMDEDSTTVWLKFEVSDTGCGIEEKNYEK 532

Query: 738 VFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F      +S+ +     G GLGLSI   F  L  G +++SS     +T    +P
Sbjct: 533 IFMPFEQEHEDISHVY----GGTGLGLSISRRFAELMDGRLTVSSQVGKGSTFTLTMP 586


>gi|182418495|ref|ZP_02949788.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|237667746|ref|ZP_04527730.1| sensory box histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377658|gb|EDT75203.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|237656094|gb|EEP53650.1| sensory box histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 546

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 556 TEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVE 611
           T+K E LR    +E++  F  ++S+ELR+PL  +I    LL  K+    SL+    +Y  
Sbjct: 274 TQKLEILRLKHEEELRTQFFANISHELRTPLNIMICSFQLLESKSKDKDSLSEYYKKYEN 333

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS +S+ +L L+N+I+D +  +AG  K++++   +  ++ ++  SIA         I  
Sbjct: 334 VISENSSRMLRLINNIIDASKFEAGCFKMDFANCEIIRVIEDITLSIAQSEKSQKRNIIF 393

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            ++ +      D + + ++   +LSNA+ F+     +I+    +    +  VK+NG  IP
Sbjct: 394 DTNTEFLEIKCDPENIERVMLNLLSNAIKFTDNDGEIIVSCEENEDYLVIRVKDNGIGIP 453

Query: 732 EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +    +F RFV    + R    G G+GLSIV+  ++ H G + I+
Sbjct: 454 PEFRSRIFERFVQVDKSFRRNVEGSGIGLSIVKFIVDSHEGEIYIN 499


>gi|95930270|ref|ZP_01313008.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133733|gb|EAT15394.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 946

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 124/234 (52%), Gaps = 10/234 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTIL 620
           R+ D++KN F+   ++EL +PLT I+GF +LL  +  +      +Q +++E I     +L
Sbjct: 711 RELDQLKNEFISSAAHELNTPLTVIMGFAELLVNREYRQSITLEQQQEFLETIRNKGEVL 770

Query: 621 LNLVNDILDLATVDAG-IMKLNYSTIVLN-DLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            ++V+D+L L  ++ G  ++L Y    L  D++  VK     K + ++  I ++   +L 
Sbjct: 771 TSIVDDLLKLEQLEFGQSIQLQYHCFDLQLDIMTLVKHY--EKTYTDHRFIVMVEPCELW 828

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD++R+ Q+   +LSNA+ FS   + + +     N   + +V++ G  + +     V
Sbjct: 829 ---ADQERVGQVLDNLLSNAVKFSPPQTRIHISLQMKNHQAVITVRDEGIGMEQKNIDKV 885

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F++F   +     + G+GLGL++ +S I+ H G + + S  +  TT+   +P +
Sbjct: 886 FDKFFRIDGSTTSKGGLGLGLTVAKSIIDAHHGSIRVDSEVDRGTTVTLTLPCQ 939


>gi|325923492|ref|ZP_08185146.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325546028|gb|EGD17228.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 537

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+   S+ELR+PL  I+G+  +L+   +        +++++I  +   LL L+
Sbjct: 173 ANRAKTEFLSRSSHELRTPLNAILGYAQVLE---MDLPEPAHRRHLQHILGAGRHLLGLI 229

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ++LD+A ++A  + L+   I +   ++E    IA    +  I ++  +     +  AD 
Sbjct: 230 TELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKYGIALQPAAIDGPWTVRADA 289

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QRL Q+   +LSNA+ F+  G  V + A  D      +V + G+ +     + +F  F  
Sbjct: 290 QRLRQVLLNLLSNAVKFNRTGGQVQVSAQPDGEQVRITVADQGAGLTPAQIERLFTPFER 349

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             A R    G GLGL++ +  I   GG + + SS +G 
Sbjct: 350 LGAERSAVEGTGLGLALSKRLIEAMGGRIGVDSSRDGA 387


>gi|302519445|ref|ZP_07271787.1| two-component system sensor kinase [Streptomyces sp. SPB78]
 gi|302428340|gb|EFL00156.1| two-component system sensor kinase [Streptomyces sp. SPB78]
          Length = 584

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  AL  +   +   +E    FV  +S+ELR+PLT I   T++L+  ++ +L+      V
Sbjct: 287 AAAALERRVADMSAREEASRRFVADMSHELRTPLTAITAVTEVLE-EEIDTLDPMIEPAV 345

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             + + +  L  LV +++++   DAG  +L    +   D+ +++   I  +   + + + 
Sbjct: 346 RLVVSETRRLNTLVENLMEVTRFDAGTARLVCDDV---DIADQITACIDARAWLDAVEL- 401

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              D + G     D +RL  I + ++ NA+     GS V +    +    +  V+++G  
Sbjct: 402 ---DAERGIMARVDPRRLDVILANLIGNALKHG--GSPVRVSVRVEGPSLVIRVRDHGPG 456

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           IPED+   VF+RF  ++A R +  G GLGLSI ++  ++HGG ++ ++S EG      R+
Sbjct: 457 IPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAQANAHIHGGGITAANSPEGGAVFTLRL 516

Query: 789 P 789
           P
Sbjct: 517 P 517


>gi|256829865|ref|YP_003158593.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579041|gb|ACU90177.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 534

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 125/243 (51%), Gaps = 7/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L   NE L+  D +K+ F+  +S+ELRSPLT+I G  D L+ ++    ++ +  Y+
Sbjct: 293 ATSELALANEELKTLDRLKSEFLATMSHELRSPLTSIRGGLDYLRRTE---TSADRQDYL 349

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  + + L +LV DI D+  ++A  +  N+    + +L+ E+ + ++    E  +R+ 
Sbjct: 350 HIMDKNVSRLTHLVTDIFDITRIEAEKIDWNFGPADMTELVGEIVEIMSPLAEERGLRLG 409

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           ++S G + + +AD +R+ Q+   +  NA+ +S  G  +      + G+    V++ G  I
Sbjct: 410 LLSSGPMIA-LADVERIEQVIVNLTDNAIKYSPDGGVISFTLQNEGGEIRILVRDQGPGI 468

Query: 731 PEDMCKSVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           P    +++F +F    S+   G+  G GLGL+I    +  HGG + +  +  G +     
Sbjct: 469 PPGDRQAIFKKFHTAPSSGTGGKPGGTGLGLAICSQIVRAHGGRIWVEDNPGGGSVFTFT 528

Query: 788 IPS 790
           +P+
Sbjct: 529 LPA 531


>gi|299537061|ref|ZP_07050364.1| integral membrane sensor hybrid histidine kinase [Lysinibacillus
           fusiformis ZC1]
 gi|298727302|gb|EFI67874.1| integral membrane sensor hybrid histidine kinase [Lysinibacillus
           fusiformis ZC1]
          Length = 1015

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 121/244 (49%), Gaps = 6/244 (2%)

Query: 550 RAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           RA +A   +   +E L + +++KN F+   S+ELR+PL  I+  +  L     G L   Q
Sbjct: 413 RANQAVLKIAALSEELLEHNQMKNEFLLKTSHELRAPLNGILNLSRSLMEGAQGPLKRSQ 472

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  I + +  + +LV D+L  +    G ++++  ++ L+ +++EV   I + M +N+
Sbjct: 473 QEQVILIHSVTQRIGHLVEDLLFSSNQMTGEVRISLRSVSLS-VIHEVVAEIRSVMPKNS 531

Query: 667 -IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +R+    +  L     D  R  QI   +L NA+ F+  G T+ + A  +    +  V +
Sbjct: 532 QVRVAAEINWDLPKIFTDELRFKQILYNLLHNAIKFTQNG-TITVTAHVEQQQMVIQVSD 590

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP      +FN F    H   + G+GLGLSI ++ +    G++ ++S+ E  TT  
Sbjct: 591 TGCGIPTQELDRIFNAFYQGNHHHNKEGLGLGLSITKNIVEKLNGNIYVTSTVEEGTTFT 650

Query: 786 CRIP 789
             +P
Sbjct: 651 FTMP 654


>gi|284166170|ref|YP_003404449.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015825|gb|ADB61776.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 520

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 124/257 (48%), Gaps = 13/257 (5%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +LT  +VT+ V  ER L E NE L +       F    S++L+ PL  I  +  LL+ 
Sbjct: 264 KAVLTCTDVTERVEYERDLQESNERLEQ-------FAYAASHDLQEPLRMISSYLQLLEN 316

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+++  +++++    +  +  +++ +LD + VD       + T+ L+ +L++V+ 
Sbjct: 317 RYADELDAEAREFIDFAVDGADRMRGMIDALLDYSRVDK--ETDTFETVELDSVLSDVRA 374

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARD 715
            +  ++  ++  I V S   L     D ++L Q+F  +L NA+++S +    V + A RD
Sbjct: 375 DLRARIEASDAEIAVDS---LPRVYGDGEQLRQVFRNLLDNAIEYSGEEPPRVRVSAERD 431

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             +++ +V++ G  I  +    VF  F       +  G G+GL++ E  +  H G +   
Sbjct: 432 EDEWVIAVRDEGIGIDTEELDRVFEVFERLHPPDEHDGTGIGLALCERIVERHNGEIWAE 491

Query: 776 SSDEGVTTINCRIPSKE 792
           S     +T    +P +E
Sbjct: 492 SVPGDGSTFYFTVPVEE 508


>gi|268591166|ref|ZP_06125387.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131]
 gi|291313393|gb|EFE53846.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131]
          Length = 924

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 130/252 (51%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+++  V+ E++L +  +A  +A+  K+ F+  VS+ELR+PL  IIG  +LL+  +L 
Sbjct: 425 VLVDISIRVQMEKSLQDVADAAEQANHAKSMFLATVSHELRTPLYGIIGNIELLQRYELP 484

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               K ++ V  +  SS++LL +++DILD + +++  +K+        ++   V  +   
Sbjct: 485 ---EKATRLVSTMDNSSSLLLQIISDILDFSKIESKQLKIESKLFNCREVFAFVLANYLP 541

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  I +    +  +   +  D  RL Q+ S I++N++ F+  G  V+L   +D    
Sbjct: 542 LVTKKKISLYSFIEPNIPDLILNDPVRLQQVISNIVNNSIKFTESG-FVLLYVWKDENYL 600

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              ++++G  +   +   +F+ F  V + +    +G GLGL+I E  +NL  G + +SS 
Sbjct: 601 KIEIRDSGIGMTHAVVMKLFDPFFQVYDQNNMGHKGTGLGLAICEKLVNLMDGDIEVSSQ 660

Query: 778 DEGVTTINCRIP 789
               ++   RIP
Sbjct: 661 IGLGSSFTIRIP 672


>gi|169827295|ref|YP_001697453.1| sensor protein [Lysinibacillus sphaericus C3-41]
 gi|168991783|gb|ACA39323.1| Sensor protein [Lysinibacillus sphaericus C3-41]
          Length = 561

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 121/240 (50%), Gaps = 8/240 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE++    + +++++ F+ +VS+ELR+P+  + G+++ L          ++++  + 
Sbjct: 325 RDMTEQH----RLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDQEERNEITKI 380

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   S  +  LV D+LDLA +++G M L    + +N     + Q  A    E ++ +   
Sbjct: 381 IYDESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHVHLLFD 440

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           S+    + +  D  R+ Q+ + ++ NA+  + +GS V +K  ++      SV++ G  IP
Sbjct: 441 SEFNDDAMINIDEDRIEQVLTNLVDNALRHTDEGS-VTVKVEKEPTFAKISVQDTGHGIP 499

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +D    VF RF     A    + G GLGL+I  + +  H G++ + S  +  TT    +P
Sbjct: 500 QDDLPYVFERFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 559


>gi|188991538|ref|YP_001903548.1| Sensory/regulatory protein RpfC [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733298|emb|CAP51497.1| Sensory/regulatory protein RpfC [Xanthomonas campestris pv.
           campestris]
          Length = 726

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +     
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGTQ 289

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
           ++D        D   L Q+   ++ NA+ F+  G  V+L+  R +G         F V++
Sbjct: 290 VADDVPDLLKGDTAHLRQVLLNLVGNAVKFTEHGH-VLLRVTRVSGSAEDAVRLRFDVED 348

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
            G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG + 
Sbjct: 349 TGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIG 398


>gi|329963868|ref|ZP_08301210.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328527121|gb|EGF54127.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 479

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 119/217 (54%), Gaps = 4/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++G+LN +Q Q    I  ++  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSNSIKENADRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            +  ++L++  V+AG +++        +L+    ++   +  +  I+I+V   + K+   
Sbjct: 311 GITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVEYPEEKMPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   V++ A  D GDF+   V++ G  I     +S+F
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKHD-GDFVEMYVQDFGKGIDPRYHQSIF 429

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 430 DRYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVQS 465


>gi|325262999|ref|ZP_08129735.1| sensor histidine kinase KdpD [Clostridium sp. D5]
 gi|324032093|gb|EGB93372.1| sensor histidine kinase KdpD [Clostridium sp. D5]
          Length = 892

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 115/214 (53%), Gaps = 7/214 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV-EYISASSTILLN 622
           + ++++ + ++ +S++LR+PLT+I G  + L  ++ G +  +Q + + + I   S  L+N
Sbjct: 662 QKEQLRANLLRSISHDLRTPLTSISGNAETLLINE-GKVEKEQRKKIYKDIYDDSMWLIN 720

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV ++L +  ++ G M+LN    ++ D++ E    +  +  E  I ++     +L     
Sbjct: 721 LVENLLSVTRIENGTMELNLQGEIVEDVIEEALHHVNRRGKEQKIHVEC---DELLMAKM 777

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D + +LQ+   +  NA+ ++  GS + +KA +     + SV +NG  IP +    +F  F
Sbjct: 778 DVKLMLQVLINLTDNAVKYTPAGSDIRIKAEKQGDRAVISVTDNGLGIPAEQKSRLFQMF 837

Query: 743 VSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
            +  H     RRG+GLGL++ +S +N HG  + +
Sbjct: 838 YTAGHAVSDGRRGMGLGLTLCKSIVNAHGSELKV 871


>gi|259419178|ref|ZP_05743095.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259345400|gb|EEW57254.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 825

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 129/250 (51%), Gaps = 10/250 (4%)

Query: 537 QTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           Q ++++V +++  ++AE  L    +     ++ K+  +  +S+E+R+PLT I+G  D+L+
Sbjct: 317 QVLVSYVRDISRRLQAEEELRRARDDALAGEQAKDRLLTVMSHEMRTPLTGILGSLDVLE 376

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              LG   + Q +Y++ +  S  +LL+ VND+L L+ ++AG          L++L++ + 
Sbjct: 377 --DLGP-TADQQRYMQAMRVSGELLLHHVNDVLQLSRLEAGADPDPPHPFDLDELVSGIG 433

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAAR 714
           +S       NN  + V       S V  R R +Q +   ++ NA+ F+  G+ V +   R
Sbjct: 434 ESQQAIARRNNNELTVFCSLGGSSGVEGRCRYVQQVLLNLIGNALKFTHDGA-VSVDVMR 492

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             GD + FSV + G  I  +    +F+ F  +  +++    G GLGL+I    + L GG 
Sbjct: 493 TEGDLVEFSVADTGKGIAAEDLDRIFDDFTMLDPSYKRGSEGTGLGLAISRRLVRLMGGE 552

Query: 772 VSI-SSSDEG 780
           ++  S  DEG
Sbjct: 553 ITCESEPDEG 562


>gi|225175428|ref|ZP_03729423.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169180|gb|EEG77979.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 546

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 119/237 (50%), Gaps = 8/237 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K + +++ F+  VS+ELR+PL+ I+ F +LL+     +   ++ Q +  + +SS 
Sbjct: 306 NHDLEKMNRLQSEFLASVSHELRTPLSCILAFIELLEAP---AFAHQRQQNLADLKSSSE 362

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LLN+VN++LD A ++AG ++ +      ++++    ++      E ++ +    +  L 
Sbjct: 363 KLLNMVNNLLDTAKLEAGAIEPDIQEHRADEIVQGTIKAFMPLAREKSLTVTSDIEPGLP 422

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMC 735
               D +R+ Q+   +L NA+ F+  G  + ++     +     +F V++ G+ I  +  
Sbjct: 423 RVKCDVERVRQVLVNLLGNAVKFTDPGGRITVRVNSEGKTQQYVVFRVEDTGAGISREEK 482

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + +F RF   A    ++  G GLGL + +  I + GG + + S     T    R+P+
Sbjct: 483 EVIFQRFRQGAVPVNKKQAGSGLGLYLSKGLIEMQGGEIGLESEPGQGTAFWFRLPA 539


>gi|170077996|ref|YP_001734634.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885665|gb|ACA99378.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1019

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 154/322 (47%), Gaps = 26/322 (8%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPL 533
           T I  IAA  ++ Y E+        I   ++ +  +  G   +L+      + ++S  PL
Sbjct: 531 TEIPTIAAWAAKAYGEA-YLTALQGIEKVYEIQNSTHDGEYAILTKDGEKRIWDFSSAPL 589

Query: 534 ---PNAQTM--LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              P+ + +     ++VTD    E AL    +   +A+  K+ F+ ++S+ELR+PL  I+
Sbjct: 590 GTLPDGRKLQITMAMDVTDRKADELALQAAKKQAEEANRAKSLFLANMSHELRTPLNGIL 649

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+  +L   +  SL+++Q   +  I      LL L+ D+LD + ++A  ++L  + +  +
Sbjct: 650 GYAQILMFDE--SLSAEQKSSLSIIEQCGQHLLRLIADVLDFSKIEAQRLELIPTAVQFH 707

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST 707
             + ++ Q+   K  E  + +    D  +  + + D QRL Q+   +L NA+ F+ +GS 
Sbjct: 708 YFILDIIQTCQIKATEKQLLLNYDIDPDIPDYLLVDDQRLRQVLLNLLGNAIKFTHQGSV 767

Query: 708 VI-----------LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGV 754
           V+            K+ + +   + F+V++ G  I  +  + +F  F     R  R  G 
Sbjct: 768 VLDVQLSQPPQTPPKSPKHHWHRVHFAVRDTGCGIDPENHQKIFLPFEQIGDRRSRPHGT 827

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLGL+I +  + + GG + ++S
Sbjct: 828 GLGLAISQKLVAMMGGELQLTS 849


>gi|86138705|ref|ZP_01057278.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           MED193]
 gi|85824765|gb|EAQ44967.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           MED193]
          Length = 866

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 129/252 (51%), Gaps = 14/252 (5%)

Query: 535 NAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            +Q  + FV    +++D + A+  L    +     +  K + +  +S+E+R+PLT I+G 
Sbjct: 351 RSQADMVFVAYLRDISDRIAADEELRRARDDALAGERAKANLLTVMSHEMRTPLTGILGA 410

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            DLL+ +     N++QS+Y++ +S S  +LL+ VND+L L+++++GI         L ++
Sbjct: 411 IDLLQET---DPNAEQSRYLDAMSVSGELLLHHVNDVLQLSSLESGIASEAACPFDLREV 467

Query: 651 LNEV--KQSIATKMHENNIRIKVISDGKLGSFVADRQRLL-QIFSKILSNAMDFSSKGST 707
           +  +   Q    + H N + +    D +  S VA + R L Q    ++ NA+ F+  G+ 
Sbjct: 468 MERLVGSQQAHARSHGNVLTLNYGLD-EAASMVAGQPRALQQALLNLIGNAIKFTRDGAV 526

Query: 708 VI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
           ++ ++ +   G   F V + G  I +   K +F  F++  +++R    G GLGL+I    
Sbjct: 527 LVDVQLSATAGHIEFHVSDTGEGIAKKDLKRIFEDFITLDSSYRRGSEGTGLGLAITRRI 586

Query: 765 INLHGGHVSISS 776
           +   GG ++  S
Sbjct: 587 VEAIGGTITCDS 598


>gi|294505928|ref|YP_003569986.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one co [Salinibacter ruber M8]
 gi|294342256|emb|CBH23034.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one co [Salinibacter ruber M8]
          Length = 1392

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 123/254 (48%), Gaps = 27/254 (10%)

Query: 546  TDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLN 603
            T+ +  ++  TE+  E L++ DE KN F  HVS+E R+PL+ I+    D L+ +  G+ +
Sbjct: 828  TEELARQKEKTERQAERLQELDEAKNRFFAHVSHEFRTPLSLILSPLRDALQRATDGAAS 887

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              ++Q +  ++ ++  L  L+  +LDLAT++AG M+L+     L  L+    ++  +K  
Sbjct: 888  LSENQ-LRRMTTNAERLQRLIGQLLDLATLEAGGMELDRRPGDLAALVERTAEAFRSKAE 946

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------ 711
            +  I +K     +      D +++  I S ++ NA+ F+ +G  V+L+            
Sbjct: 947  QKGIALKTEMPPERVEMRFDPEKVETIVSNLVGNAVKFTPEGGRVVLRLRLTEDTPSGPA 1006

Query: 712  --AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVES 763
               A   G    +V + G  I       +F++F       + AH     G GLGL++   
Sbjct: 1007 ADEAPAEGGVRIAVADTGPGIDPAEQARIFDQFERSGTNSTEAH----EGTGLGLALTSE 1062

Query: 764  FINLHGGHVSISSS 777
             + LHGG + + S+
Sbjct: 1063 LVELHGGTIEVEST 1076


>gi|229190003|ref|ZP_04317011.1| hypothetical protein bcere0002_16770 [Bacillus cereus ATCC 10876]
 gi|228593495|gb|EEK51306.1| hypothetical protein bcere0002_16770 [Bacillus cereus ATCC 10876]
          Length = 291

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 128/246 (52%), Gaps = 5/246 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +
Sbjct: 41  TNVNRMVKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSNGEE 99

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L + V+D+L+   ++   ++L+   + +  L+ ++      ++ + 
Sbjct: 100 CEQYVSILKRKSYELKHQVDDLLEYCQINYREIELHKDEVDMKALIEQIMIGFVPQLDDV 159

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+   + SD  L   V D   ++++F  I+ N++ +   G  + +  +    +    +KN
Sbjct: 160 NMSFYIKSDEVLYVEV-DVALIVRLFENIIGNSIMYGKDGKEIAIGISNKTMNVEVEIKN 218

Query: 726 NGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPE+    VF +F     +      G G+GL+I +S   LH G +++ S+D+  T 
Sbjct: 219 FGQCIPEEDLPYVFEKFYRSEKSRSSYTGGKGMGLAISKSIAELHQGDLTVRSNDKE-TV 277

Query: 784 INCRIP 789
              ++P
Sbjct: 278 FTVKLP 283


>gi|225419919|ref|ZP_03762222.1| hypothetical protein CLOSTASPAR_06260 [Clostridium asparagiforme
           DSM 15981]
 gi|225041427|gb|EEG51673.1| hypothetical protein CLOSTASPAR_06260 [Clostridium asparagiforme
           DSM 15981]
          Length = 494

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 125/239 (52%), Gaps = 6/239 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISA 615
           E N    + + +K++ ++ +S++LR+PLT I G         +G ++    +  ++ I  
Sbjct: 255 ENNRIQMERERLKSTLLRSISHDLRTPLTGI-GSNAGFLYDNIGIIDQDTVRGMLKDICK 313

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  +V ++L+L  +  G + +N +  V++D++    + ++ ++  + ++ K   + 
Sbjct: 314 DTEWLSTMVENLLNLTRIQEGRLDINKTKEVVDDIIGSAVKLVSKRVGTHRLKTKTPEEI 373

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L  F  D +  +Q+   +L NA   S +G+TV + A R   +  F V ++G  IPE   
Sbjct: 374 LL--FSVDGRLFIQVLVNLLDNAFRHSGEGTTVTISAERVGNNIRFQVSDDGVGIPEGKM 431

Query: 736 KSVFNRFVSNAHR-GQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +F+ F + A++ G R RGVGLGL+I ++ +   GG +S  ++  G  T +  +P ++
Sbjct: 432 AQIFDNFFTTAYQDGDRQRGVGLGLTICKAIVEAQGGTISAFNNSAGGATFSVEMPMED 490


>gi|254361059|ref|ZP_04977204.1| histidine kinase [Mannheimia haemolytica PHL213]
 gi|153092545|gb|EDN73600.1| histidine kinase [Mannheimia haemolytica PHL213]
          Length = 616

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 118/237 (49%), Gaps = 7/237 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K    K+  +  +S+ELR+PL  IIG + +L   K      KQ +Y++ I+ S+T
Sbjct: 104 NAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDK---TTEKQQEYLKTINMSAT 160

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++  DI+DL  +D+  ++L    +    L++++            I  +V     L 
Sbjct: 161 ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPDLP 220

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
            ++  D  RL QI   ++SNA+ F+     ++L+  + D   F F+V ++G  IPE   +
Sbjct: 221 KYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPEKDQR 280

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F+ F    N+   + +G G+GLS+ +    L GG + ++S +   +T    + ++
Sbjct: 281 KIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTVQAE 337


>gi|152992352|ref|YP_001358073.1| hypothetical protein SUN_0758 [Sulfurovum sp. NBC37-1]
 gi|151424213|dbj|BAF71716.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 501

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 125/247 (50%), Gaps = 15/247 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L + N   + A E K+ F+ ++S+E+R+P+T I+GF + L   +      +Q      
Sbjct: 110 KDLQQANIDAQIASETKSEFLANMSHEIRTPMTGILGFVEQLAKKENDPERLRQ---FNI 166

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LL+++NDILDL+ +++G M L      L+ L ++        +   NI +   
Sbjct: 167 ITKSGQTLLSIINDILDLSKIESGKMTLEPQPTDLHKLFDDTITLFDELIKSKNIDLHKE 226

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--SVKNNGSS 729
            D KL    + D+ R  Q+   +LSNA+ F+  G ++ L+A+ D+   I   +V++ G  
Sbjct: 227 IDEKLPKCLIIDQLRFKQVILNLLSNAIKFTPSGGSISLQASYDHTTQILQCAVQDTGLG 286

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG------ 780
           I ++  + +F+ F        RR  G GLGL+I    +++  G + + S+  EG      
Sbjct: 287 IGKEHLEKIFHAFAQEDTSTTRRYGGTGLGLTISSKLLHMMKGQIHVQSTLGEGSRFYLD 346

Query: 781 VTTINCR 787
           V  ++C+
Sbjct: 347 VPVVSCK 353


>gi|310817499|ref|YP_003949857.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390571|gb|ADO68030.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 606

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 5/231 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ DE+KN  V  V++E R+PLT++     L     +G +  KQ+  +         L 
Sbjct: 379 LRRFDELKNDLVATVAHEFRTPLTSLRMAIHLCAEGVVGPVTDKQADLLTAAREDCHRLQ 438

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +V+D+LDL+ + +G + L+   +   +L+        T   E  +R+      +     
Sbjct: 439 GIVDDLLDLSRIQSGRLVLDLRRVPAAELVEGALGVHWTAAEERGVRLSQEVAPEAEEVT 498

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +R+  + S ++ N +  +  G  V ++ +R+     F VK+ G  I       +F +
Sbjct: 499 VDAERMQLVLSNLVGNGIRHTPSGGEVSVRVSREGARVRFEVKDTGEGIAPSEQARIFEK 558

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  V  A  G   G GLGLSI +  +  HGG + + S++   +T    +P 
Sbjct: 559 FYRVPGAPSG---GAGLGLSIAQEGVQAHGGELGVLSAEGQGSTFWFTVPG 606


>gi|288959997|ref|YP_003450337.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912305|dbj|BAI73793.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1522

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 19/241 (7%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSK--LGSL 602
            +S  AER    + EAL + D  K +F  + S+E R+PLT ++G   ++L  S    GS 
Sbjct: 442 AESYEAER---RRAEALAEIDRAKTAFFSNASHEFRTPLTLMLGPLEEMLHGSAALAGSS 498

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            S     +E +  +   LL LVN +LD + ++AG M+ +++ + L     ++     + M
Sbjct: 499 VSVSRNELEMVHRNGQRLLRLVNALLDFSRIEAGRMRASFAPVDLAAYTADLASGFRSAM 558

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF 721
            +  +  ++           DR    +I   ++SNA  ++ +G   V L+A R  G  + 
Sbjct: 559 EKAGLAYRIDCPTLPEPVWIDRDLWEKIVLNLISNAFKYTLRGEVAVTLEAVR--GAAVL 616

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ----RRGVGLGLSIVESFINLHGGHVSIS 775
            V++ G  IPE     VF+RF    HR  GQ      G G+GL++V+    LHGG V + 
Sbjct: 617 KVRDTGIGIPEAELTRVFDRF----HRIEGQVGRTHEGTGIGLALVKDLTALHGGTVGVE 672

Query: 776 S 776
           S
Sbjct: 673 S 673



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 113/262 (43%), Gaps = 36/262 (13%)

Query: 553  RALTEKNEALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +AL +  E LR+A +++        V+++  + L  +IG    L  + +G  N++ +  V
Sbjct: 999  QALRQAEEQLRRAQKMEAVGQLTGGVAHDFNN-LLQVIGGNLQLLLNDVGD-NARAADRV 1056

Query: 611  EYISASSTILLNLVNDILDLA---TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
                +  +    L + +L  A    ++  ++        L+D+L  V            I
Sbjct: 1057 RNALSGVSRGAKLASSLLAFARRQPLEPRVVNPGRLIRGLDDMLRRVLG--------EEI 1108

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDN 716
            RI+VI  G L + V D  ++      +  NA D + KG  V+           + AAR +
Sbjct: 1109 RIEVIGGGGLWNTVVDPTQVENALLNLAINARD-AMKGRGVLTIEAGNAELDDVYAAR-H 1166

Query: 717  GDF------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
            GD       + +V + GS +  ++ +  F+ F +    G   G GLGLS+V  F+   GG
Sbjct: 1167 GDVRPGQYVMLAVTDTGSGMSPEVRERAFDPFFTTKPEGH--GTGLGLSMVYGFVKQSGG 1224

Query: 771  HVSISSSDEGVTTINCRIPSKE 792
            HV I S     TTI   +P  +
Sbjct: 1225 HVKIYSEMGHGTTIRLYLPRTQ 1246


>gi|291287528|ref|YP_003504344.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884688|gb|ADD68388.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 472

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ DE+++ F+ +VS+ELR+PLT+I   +++LK           +  +  IS+ S  ++
Sbjct: 242 LKENDELRSEFIGNVSHELRTPLTSIREASEMLKEEYFRGDKETSNNLLNIISSESDRMI 301

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSF 680
           N VN+IL++  +D      ++    +  + +   +  A      NI +  +IS G++ + 
Sbjct: 302 NSVNNILEITRLDMAKEYYDFEQTDIGKIAHSAIEKTAPIAERRNITVTSLISKGEVQAL 361

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
           V D +++  +F  +L NA+ +S + + V + A R  G+F+   VK+ G  I +D    +F
Sbjct: 362 V-DVEKIAVVFVNLLGNALKYSDQNTHVTISADR-CGEFLCVCVKDEGIGISQDELSKIF 419

Query: 740 NRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHV-SISSSDEG 780
            R+   ++R  + +G GLGL+I +  I  HGG + + SS  EG
Sbjct: 420 ERYRLGSNRSTEYKGTGLGLAICKKIIERHGGEIWAESSKGEG 462


>gi|225388658|ref|ZP_03758382.1| hypothetical protein CLOSTASPAR_02394 [Clostridium asparagiforme
           DSM 15981]
 gi|225045256|gb|EEG55502.1| hypothetical protein CLOSTASPAR_02394 [Clostridium asparagiforme
           DSM 15981]
          Length = 345

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 130/241 (53%), Gaps = 6/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L E+ +  ++A++ KN  V ++++++++PLT++IG+  LL  +     + ++++Y+ 
Sbjct: 99  KRTLAERADKAKRAEQQKNDLVVYLAHDIKTPLTSVIGYLSLLDETP-DMPDEEKAKYIH 157

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                +  L  LVN+  ++    +  + L+ + + L  ++ ++   +  +++     I+ 
Sbjct: 158 TAWEKANRLRTLVNEFFEITRSHSESLPLHKTKVDLFYMIAQISDELYPQLNACGKIIEN 217

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  + S   D  +L ++F+ IL NA+ +S++ S VI  +AR+  ++      N   IP
Sbjct: 218 HVDEDI-SVYGDSDKLARVFNNILKNAISYSAENS-VIKVSARELSEWTVIQFENDGEIP 275

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED    +F++F  +S+A   +  G GLGL+I ++ I LHGG +   S + G T     IP
Sbjct: 276 EDKLNVIFDKFCRLSSARLSETGGSGLGLAIAKNIIVLHGGQIKAESGN-GRTAFIIEIP 334

Query: 790 S 790
           S
Sbjct: 335 S 335


>gi|225569632|ref|ZP_03778657.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
 gi|225161102|gb|EEG73721.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
          Length = 870

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 133/264 (50%), Gaps = 16/264 (6%)

Query: 538 TMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           T+LTF   +  ++   +E   TEK  A   A+  K+ F+  +S+E+R+PL  I+G  +L 
Sbjct: 319 TVLTFFLLLRRSEKRSSELLRTEKERA-ETANRAKSDFLSQMSHEIRTPLNGIMGMVELG 377

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K         +    ++ I+ SS  LL+L+NDILD++ +++G ++L+     L  LL  +
Sbjct: 378 KHHI--EEPDRMRNCLDKITLSSAHLLSLINDILDMSKIESGKIELHPERFDLGRLLRTL 435

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA- 712
                 +     I  ++   G+L  ++  D  RL QI + +LSNA+ F+     V L   
Sbjct: 436 TTVFLVQAKNKQIDFQIFLYGELEEYLTGDALRLNQILTNLLSNALKFTPAHGYVSLNVE 495

Query: 713 --ARD-NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
              RD NG ++ F V++ G  I  +  + VF  F +  + G  R   G GLGL I ++F+
Sbjct: 496 ELQRDENGIWLRFEVRDTGRGIAPENLERVFEAF-TQENSGIVREYGGTGLGLPITKNFV 554

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            + GG V++SS     +     +P
Sbjct: 555 QMMGGSVTVSSEIGAGSVFTVDLP 578


>gi|160945119|ref|ZP_02092345.1| hypothetical protein FAEPRAM212_02638 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442850|gb|EDP19855.1| hypothetical protein FAEPRAM212_02638 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105635|emb|CBL03179.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 449

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 12/253 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +   +S+ ++R L E NE +R+       F  +VS+EL++PLT+I G+ +L++T    +
Sbjct: 203 LIPFAESIHSDRILRENNEKMRQ------EFTANVSHELKTPLTSISGYAELIETGI--A 254

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-T 660
                  +   I + +T ++ LVNDIL L+ +D      +   +   DLL   K+ +   
Sbjct: 255 KPEDVPDFGRKIHSEATRMIQLVNDILQLSKLDTVSETGDTPVMETVDLLEVAKECVERQ 314

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDF 719
           K++     I +   G+    +  R  L ++   +  NA+ ++  G  V I+     +G  
Sbjct: 315 KLNARRAYISLTYLGESAPVLGSRALLDELCQNLCDNAIRYNRPGGKVQIITTCNRDGHC 374

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +V +NG  IP +   SVF RF  V  +      G GLGL+IV+    +H   + + S 
Sbjct: 375 SLTVADNGIGIPREAQASVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLESQ 434

Query: 778 DEGVTTINCRIPS 790
            +  TTI    P+
Sbjct: 435 VDVGTTITVTFPT 447


>gi|221133477|ref|ZP_03559782.1| aerobic respiration control sensor protein ArcB [Glaciecola sp.
           HTCC2999]
          Length = 785

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 14/248 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +A+ KA + K  F+  +S+ELR+PL  I+G + +L+ ++L     +Q  +
Sbjct: 267 RDMTERMKAEKAVEKASKDKTKFIATISHELRTPLNGIVGLSRMLRDTEL---TEEQFTW 323

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I AS+  L N+ NDI+DL  ++   + L+Y T+ L     E+   I     +  ++ 
Sbjct: 324 ISTIYASAITLGNIFNDIIDLDKLERDKIALSYKTLSLETFTAELSSVIELLAADKGLQF 383

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DN--GDFIFSV 723
                  L  FV  D  RL QI   +L NA+ F+ KG   +  +A    DN   +  F +
Sbjct: 384 VSNIIKPLPDFVQVDGTRLRQILWNMLFNAVKFTPKGQVSLSVSATVQDDNKTANVCFDI 443

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP+     +F  +    H   +   G G+GL+I +  ++   GH+ + S     
Sbjct: 444 QDTGVGIPQADIDKIFAMYYQVDHPDHQSATGTGIGLAICKEMVDRMNGHIEVQSEVGKG 503

Query: 782 TTINCRIP 789
           T     IP
Sbjct: 504 TRFLINIP 511


>gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1364

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E+ L    +A R A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +
Sbjct: 675 PGAAQDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSL 734

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
               + + V    +   + + D  R+ Q+   ++ NA+ F+ +G  V+      +GD   
Sbjct: 735 SAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNK 794

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG + +
Sbjct: 795 IKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEV 854

Query: 775 SS 776
            S
Sbjct: 855 ES 856


>gi|78049349|ref|YP_365524.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037779|emb|CAJ25524.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 582

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 11/228 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +AL   D  ++ F+  +S+ELR+PL  +I    L++T ++    ++Q + +  ++ ++T 
Sbjct: 202 QALASRDA-QSRFISTMSHELRTPLNAVINCAQLIETEQM---PAQQRELLHSVTVNATA 257

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L + VN++LD+A++D G ++L+   + L D++  VK   AT      + + V  D     
Sbjct: 258 LRHRVNEVLDVASIDGGRLQLHRKPLNLLDVVTTVKAVCATAASSKGVTLDVRVDSPQAP 317

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDM 734
            V  D  R+ Q+ S ++ NA+ F+  G TV L       ++      +V + G  +P+D 
Sbjct: 318 HVMGDEGRIEQVISNLVINAIKFTPAGGTVDLLIDATQVQERWSIAVTVTDTGIGVPDDQ 377

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              +F  F  +S        GVGLGL I  S  +  GG +++S +  G
Sbjct: 378 KAYIFTPFTQLSTGFSRVEGGVGLGLYIALSVSDAMGGSLTVSDNPAG 425


>gi|331701208|ref|YP_004398167.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128551|gb|AEB73104.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus buchneri NRRL B-30929]
          Length = 487

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 126/240 (52%), Gaps = 7/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L + N  +++ +E +  F+ + ++E+R+PLT I G  + +K   +   +  +S  ++ 
Sbjct: 240 QSLQQANNEIQRQEERRQEFLANAAHEMRTPLTTISGILEGIKYDVIPQESRAKS--IDL 297

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S+ +  L+ LVN+ LD   + +  ++L+        +L  V   + +K  E+  ++ V+
Sbjct: 298 MSSETQWLIRLVNENLDYEKIRSNSIQLDKRHFNAAKVLENVIDQLDSKAEESQDKL-VL 356

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  K  S  AD  R +QI   +++NA+ F+  G T+ +   R   + I  V + G  + E
Sbjct: 357 NAPKDLSIYADYDRFVQIVFNMVTNAIQFTDHG-TITVTGERGYNETIIKVADTGIGMSE 415

Query: 733 DMCKSVFNRFV-SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D  K++F R+  ++A R  G+    GLGL+IV   +  HGG +S+SS     TT    IP
Sbjct: 416 DQQKNIFERYYKADASRRTGKYGESGLGLAIVHQLVKSHGGKISVSSKLGEGTTFTVIIP 475


>gi|261493613|ref|ZP_05990133.1| histidine kinase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495451|ref|ZP_05991899.1| histidine kinase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308956|gb|EEY10211.1| histidine kinase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310795|gb|EEY11978.1| histidine kinase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 616

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 118/237 (49%), Gaps = 7/237 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K    K+  +  +S+ELR+PL  IIG + +L   K      KQ +Y++ I+ S+T
Sbjct: 104 NAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDK---TTEKQQEYLKTINMSAT 160

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L ++  DI+DL  +D+  ++L    +    L++++            I  +V     L 
Sbjct: 161 ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPDLP 220

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
            ++  D  RL QI   ++SNA+ F+     ++L+  + D   F F+V ++G  IPE   +
Sbjct: 221 KYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPEKDQR 280

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F+ F    N+   + +G G+GLS+ +    L GG + ++S +   +T    + ++
Sbjct: 281 KIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTVQAE 337


>gi|239623825|ref|ZP_04666856.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521856|gb|EEQ61722.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1081

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 123/249 (49%), Gaps = 14/249 (5%)

Query: 540 LTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           ++  +VTD VR E+     L     A  +A+  K+ F+  +S+E+R+P+  IIG + +  
Sbjct: 531 MSRTDVTDVVRKEQRQKEDLAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMSTIAA 590

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S +G  + +    +  I  SS  LL+L+NDILD++ +++G M L    I   D LN + 
Sbjct: 591 QS-IGD-DEQVEDCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIPTEDFLNGIN 648

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA- 713
                +     +  + I D  L   ++ D  +L Q+   ILSNA+ F+ +G  V L AA 
Sbjct: 649 SICYAQAAARGVDYECIVDPVLDDYYMGDAMKLQQVLINILSNAIKFTKEGGKVTLSAAL 708

Query: 714 ----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINL 767
               +++    F V + G  + E+    +F  F   S        G GLGL+I +S +++
Sbjct: 709 RRKTKNDAVLRFIVNDTGIGMGEEFIPHIFEPFSQESTGTTTPYGGSGLGLAISKSIVDM 768

Query: 768 HGGHVSISS 776
             G +++ S
Sbjct: 769 MDGKINVRS 777


>gi|241951126|ref|XP_002418285.1| histidine kinase osmosensor and regulator, putative [Candida
            dubliniensis CD36]
 gi|223641624|emb|CAX43585.1| histidine kinase osmosensor and regulator, putative [Candida
            dubliniensis CD36]
          Length = 2467

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 11/230 (4%)

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            A   A + K SF+ ++S+E+R+P  +++ F   L  +KL   +S Q +YVE I +S+ I 
Sbjct: 1986 AAEDATDEKASFLANMSHEIRTPFNSLLSFAIFLLDTKL---DSTQREYVEAIQSSAMIT 2042

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            LN+++ IL  + ++ G   L  +   LND +    Q     +  + I +   ++     F
Sbjct: 2043 LNIIDGILAFSKIEHGSFTLENAPFSLNDCIETAIQVSGETVLNDQIELVFCNNCPEIEF 2102

Query: 681  -VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMC 735
             V D  R  QI   ++ NA+ F++KG  +I     K   +  +   SV+++G  IP+   
Sbjct: 2103 VVGDLTRFRQIIINLVGNAIKFTTKGHVLISCDSRKLTEERVEINVSVQDSGIGIPKKSQ 2162

Query: 736  KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
              VF  F  V  + R Q  G GLGL+I +    L GG +    S+EG+ T
Sbjct: 2163 NKVFGAFSQVDGSARRQYGGSGLGLAISKKLTELMGGTIRF-ESEEGIGT 2211


>gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21]
 gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21]
          Length = 588

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 111/214 (51%), Gaps = 10/214 (4%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+P+  ++G  +LL  S+L   + KQ  Y + +  S   LL+++NDIL+
Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHSEL---DEKQKSYAKMLHHSGESLLDIINDILN 254

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLL 688
           ++ ++AG +++      L++      +          + +++  +  +   VA D  RL 
Sbjct: 255 ISKIEAGKLEIERIPFDLHETARGAVELYREVGRGKGVAVELQIEEDVPRCVAGDPNRLR 314

Query: 689 QIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+   +++N + F+ KGS    V L     NG ++ F VK+ G  IP D   ++F+ F  
Sbjct: 315 QVLINVVNNGLKFTEKGSVQVRVSLVEQNQNGQYVGFEVKDTGIGIPADSIGAIFDLFAQ 374

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                 R+  G GLGL+I +  + L GG + + S
Sbjct: 375 VDGSTTRKYGGTGLGLAIAKQLVELMGGEIGVES 408


>gi|326203230|ref|ZP_08193095.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325986488|gb|EGD47319.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 485

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 114/217 (52%), Gaps = 7/217 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L K + ++   + ++S++LR+PLT I G+ ++++   L   N+ ++  V+ I   +  L 
Sbjct: 254 LSKVEGLRRELIANISHDLRTPLTMITGYGEVMR--DLPGENTPEN--VQIIIDEAKRLT 309

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVNDILD++ + +G  K+N     + + + ++ Q     + +   RI   SD  +   +
Sbjct: 310 TLVNDILDISQLQSGTRKINVEIFNITESIRKILQRYNKLIEQEGYRIDFKSDKDIW-VI 368

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  ++ Q+   +++NA+ ++    TV +  +         + + G  I E+M   +++R
Sbjct: 369 ADAVKISQVIYNLINNAITYTGVDRTVTITQSSTAKGVKVEITDTGEGIEEEMLPLIWDR 428

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  V  AH+    G GLGLSIV+S +++HG    + S
Sbjct: 429 YYKVDKAHKRAAMGTGLGLSIVKSILDMHGAQYGVES 465


>gi|229030239|ref|ZP_04186296.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228731083|gb|EEL82008.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 364

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 134 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRYYIQVIYDKVTRLNA 192

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     +    +A
Sbjct: 193 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 252

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + L A   N      + N G  IP      +F RF
Sbjct: 253 DGDKLVRVFENLIINAIAYGNDGGYIDLAAYESNNMITIDITNYGQPIPSTDLPHIFERF 312

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 313 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGSIEVYSDDKKTT 354


>gi|254456888|ref|ZP_05070316.1| sensor protein GacS [Campylobacterales bacterium GD 1]
 gi|207085680|gb|EDZ62964.1| sensor protein GacS [Campylobacterales bacterium GD 1]
          Length = 761

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 6/216 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K  F+ ++S+E+R+PL  I+GF +LL       ++ K   Y++ I  S   LL++
Sbjct: 152 KASQAKEYFLSNMSHEIRTPLNAILGFVNLLIDE---DVSKKHRTYLDIILNSGENLLSI 208

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILD + + +G   +      L+D ++   +      +  +I I    D  +     A
Sbjct: 209 INDILDFSKLRSGEFTIEPKIFSLHDEISHTMELFVASANVKDITITSFIDPHIPKELYA 268

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  R+ QI S  LSNA+ F+  G  + ++AA  +G    SV ++G  I E+  +++F  F
Sbjct: 269 DALRIKQILSNFLSNAIKFTPNGGHISVEAACHHGILKLSVTDSGIGIAEEDIENIFTAF 328

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               H  Q+   G GLGLSI         G V   S
Sbjct: 329 AQAQHSQQKNCDGTGLGLSICHQLARHMNGSVHAKS 364


>gi|158121175|gb|ABW17001.1| two-component sensor histidine kinase [Bacillus subtilis]
          Length = 579

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%), Gaps = 7/218 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K ++++  FV +VS+EL++P+T+I GFT+ L     G++  K+  S+++  I   S  L
Sbjct: 345 KKLEQMRKDFVANVSHELKTPITSIKGFTETLLD---GAMEDKEALSEFLSIILKESERL 401

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV D+LDL+ ++     L+  T     +L E++  +  K  E  I +++         
Sbjct: 402 QSLVQDLLDLSKIEQQNFTLSIETFDPAKMLGEIETLLKHKADEKGISLQLNVPKDPQYV 461

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+F  +++NA+ ++ +G +V +       D    V ++G  I ++    +F 
Sbjct: 462 SGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPRERDIQIEVADSGIGIQKEEIPRIFE 521

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF  V         G GLGL+IV+  I  H G + ++S
Sbjct: 522 RFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559


>gi|153954094|ref|YP_001394859.1| hypothetical protein CKL_1469 [Clostridium kluyveri DSM 555]
 gi|219854707|ref|YP_002471829.1| hypothetical protein CKR_1364 [Clostridium kluyveri NBRC 12016]
 gi|146346975|gb|EDK33511.1| KdpD [Clostridium kluyveri DSM 555]
 gi|219568431|dbj|BAH06415.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 898

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 124/234 (52%), Gaps = 10/234 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + ++++ + ++ +S++LR+PLT+I G    L+  SK+ S   K+  Y + I   S  L+N
Sbjct: 666 QQEKLRGNLLRTISHDLRTPLTSISGNAGILMGNSKVLSEAQKKGLYTD-IYDDSMWLIN 724

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGSF 680
           LV +IL +  ++ G + LN       +LL E+       ++ N  N  I+ I + +L   
Sbjct: 725 LVENILSITRIEDGKINLNLQP----ELLEEIIAEALCHINRNSVNYHIETIVEDELIMA 780

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D + ++Q+   I+ NA+ ++  GS +++ A R     +  + ++G  I ++    +F+
Sbjct: 781 KVDSRLIIQVIINIVDNAIKYTPPGSHIVISAKRRKQFILVEIADDGPGIEDEAKDRLFD 840

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            F  V N H   RRG+GLGLS+ +S ++ HGG + +  +    T I   + ++E
Sbjct: 841 MFYTVDNIHGDSRRGLGLGLSLCKSIVHAHGGTIYVKDNIPQGTVICFTLQAQE 894


>gi|129306887|gb|ABO30406.1| GacS [Pseudomonas sp. CM1'A2]
 gi|129306889|gb|ABO30407.1| GacS [Pseudomonas sp. F113]
 gi|129306895|gb|ABO30410.1| GacS [Pseudomonas sp. K94.31]
 gi|129306909|gb|ABO30417.1| GacS [Pseudomonas sp. Q65c-80]
          Length = 204

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|86748594|ref|YP_485090.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris HaA2]
 gi|86571622|gb|ABD06179.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris HaA2]
          Length = 1149

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 167/368 (45%), Gaps = 33/368 (8%)

Query: 437  GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            G  +D  +EG+ +F   GRI   N +  +L+  + + L      R+IA   +   N++  
Sbjct: 788  GAILDTTAEGILMFDAGGRISACNRSAEALFGYDGDELV----QRSIAELFAPESNDA-- 841

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEY-------SIIPL--------PNAQTMLT 541
                   + ++ D  KS  G+ E L D  LE         + PL        P+      
Sbjct: 842  -------VRAYFDSVKS--GSAESLLDHGLEALGRVREGGLFPLTMTIGRTQPDGPNYFA 892

Query: 542  -FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             F +++ + R E  L +  +   +A   K   +  +S+E+R PL  IIGF +++   + G
Sbjct: 893  VFRDLSQARRIEVELDQVRKLADRAAGAKADVLARLSHEIRMPLNAIIGFAEVMIEERFG 952

Query: 601  SL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L N + + Y++ I AS   ++ +V D+LDL+ ++ G + L +++  LN+L+ +    + 
Sbjct: 953  ALGNERYADYLKDIRASGERVIGIVGDLLDLSRIETGKLDLAFTSQNLNELVEQCVAVMQ 1012

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGD 718
             + +   I I+      L S  AD Q L QI   ++  ++  ++ G  VI+  A  D G+
Sbjct: 1013 PRANRERIIIRSSLAHALPSVTADAQALRQIVLNLIGTSIHLANAGGQVIVSTALSDFGE 1072

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +  V++ G  + +    +    F + A   +    G+ LS+ ++ +  +     I S+ 
Sbjct: 1073 VVLRVRDTGHRLNDSEIAAALQPFSTPAPSERSEASGVSLSLTKALVEANRAQFHIKSAP 1132

Query: 779  EGVTTINC 786
            +  T I  
Sbjct: 1133 QSGTLIEV 1140


>gi|108805803|ref|YP_645740.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108767046|gb|ABG05928.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 471

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 120/254 (47%), Gaps = 18/254 (7%)

Query: 531 IPLPNAQTMLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +P+ N Q  +  +  T +    R E A   + EAL +    +  F    S+ELR+PLT+I
Sbjct: 208 LPVANPQDEIGRLAATINALLARTEAAFGRQREALGR----QRRFAADASHELRTPLTSI 263

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIV 646
            G+  +L+   L   ++ + +    I   +  + +LV ++L LA  D G  ++L  +   
Sbjct: 264 AGYARMLERWALKDPDAAR-EGAAAIRREAERMQHLVEELLALARGDEGRPLELGRA--- 319

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSK 704
             DL    ++S A        R+ V+ +   G   A  DR+R+ Q  + +L NA+ ++ +
Sbjct: 320 --DLAEVAEESAAAARAAAGDRVSVVWEPPEGPVEAVFDRERVRQALAALLDNAVRYTPE 377

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           G  V ++A R +G     V++ G  IPE+    +F RF        RR  G GLGLSI  
Sbjct: 378 GGRVSVRALRRDGKAAVRVEDTGPGIPEEQLGMIFERFYRVDGTRSRRLGGAGLGLSIAR 437

Query: 763 SFINLHGGHVSISS 776
                HGG + + S
Sbjct: 438 QIAEAHGGAIEVRS 451


>gi|110639462|ref|YP_679671.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110282143|gb|ABG60329.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 856

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 127/248 (51%), Gaps = 17/248 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +++T   +AE    E+ E +R A E        K  F+ ++S+E+R+P+  I+GFT +L 
Sbjct: 328 IDITPLKKAELTAREQQELMRVAKEKAESASQFKTRFLSNMSHEIRTPINAILGFTAILS 387

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +   L  +Q + ++ IS S  +LL L+ +ILD++ ++ G + +   +  L + +  V 
Sbjct: 388 KQE---LTEQQKKLLKNISISGELLLKLIGNILDISKIEEGKVIIESKSFHLKESIRSVL 444

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS---TVILK 711
                   E  ++  +I D  +  + + D  R+ Q+   ++ NA+ F+S G+   +V+L 
Sbjct: 445 SPFQHSASEKGLQFHLIIDKSIPDYLLGDFPRISQVLVNLIGNALKFTSHGNITVSVLLT 504

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
             +D   F+ F + + G  I  +    +F  F   + +   +  G GLGLSIV+  ++L 
Sbjct: 505 KKQDGLSFVEFVINDTGIGIQANKQDEIFESFTQANESISVKYGGSGLGLSIVQEVVHLM 564

Query: 769 GGHVSISS 776
           GG++ + S
Sbjct: 565 GGNIQVQS 572


>gi|229194249|ref|ZP_04321093.1| hypothetical protein bcere0002_58360 [Bacillus cereus ATCC 10876]
 gi|228589224|gb|EEK47199.1| hypothetical protein bcere0002_58360 [Bacillus cereus ATCC 10876]
          Length = 279

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 120/236 (50%), Gaps = 13/236 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA   +   +  +S+++R+PLT+IIG+ D LK     S   K+ +Y+E IS  S+ L  L
Sbjct: 48  KAQNARKRLLSSISHDIRTPLTSIIGYIDALKDDIAVSREEKK-EYLEIISKKSSNLKQL 106

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +N+I ++A +DA  + +N  ++ L ++  EV      ++ +NN+ +K +S  K   F+ A
Sbjct: 107 INEIFNMAKLDADEVLINPESLELTEITREVLIEYLPEIKKNNLELK-LSLPKTKCFITA 165

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   +++I   ++ NA+ +  +G  + ++    N +F   V + G  I E     VF R 
Sbjct: 166 DYLSIIRIIDNLIKNAILYGKEGKVLGIELMESNQEFQLLVWDKGQGIAEHDLDHVFERM 225

Query: 743 VSNAHRG-QRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               +RG Q R     G GLGL+I +S +  + G + + SS    T      P  E
Sbjct: 226 ----YRGDQSRNSINGGSGLGLAIAKSLVEKNQGRIWVESSPWNKTVFGISFPKTE 277


>gi|254254262|ref|ZP_04947579.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124898907|gb|EAY70750.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 1104

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 10/228 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+PL    G  +LL  +   SL++ Q + V  I  S   LL+L+ND+L
Sbjct: 517 KSIFLAIMSHEIRTPLHGATGHLELLSNT---SLDAGQRERVGLIRRSFDSLLSLINDLL 573

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D   ++A  + +N   I +N +     Q  A  +  +N+ +   +D  L   +  D QRL
Sbjct: 574 DTTRIEANALTVNALPIYVNRIAEYCAQHFAPTILAHNVALHCYTDPALDRLLEGDDQRL 633

Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           +QI   ++SNA  F+  G    ST +L    D       V + G  IP  +   VF   V
Sbjct: 634 MQILQNLVSNAAKFTQHGTISVSTTLLDRHDDRLWVRIEVADTGIGIPSALQAMVFKPLV 693

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  RR  G GLGL +  +   L GG +++ S     +T    +P
Sbjct: 694 QADASISRRFGGTGLGLFLCRNLAELMGGRITLQSEPNVGSTFGIEVP 741


>gi|332712371|ref|ZP_08432298.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348845|gb|EGJ28458.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 375

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 161/346 (46%), Gaps = 23/346 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++  E +AVF  + R   +NPA    +   ++ L   TH            +    WD 
Sbjct: 26  VENSPECIAVFDREFRYVYANPALSQAFGIAQSELIGKTH-----HDLQMPEDFIHLWDR 80

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFV-----NVTDSVRA 551
               + +   E++      + ++++ L++    ++P   +   + FV     N++D +  
Sbjct: 81  AMEKVFATGQEKRI---EFQWITENGLQFYQSCLVPELASHGSVEFVLGYSCNISDRI-T 136

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
               +   E L+ ++     F    S++L+ PL  +  FT+LL     G L+ +  +Y+ 
Sbjct: 137 NTEFSRSIEQLQNSNRELEQFAYVASHDLQEPLRKVKSFTELLVEEYQGKLDGEADKYMA 196

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           YI      +  L+ D+L  + +  G  +L +    + ++L +V ++++  + EN+    V
Sbjct: 197 YIVDGVFRMQTLIKDLLAYSRL--GRSELTFEPTDIAEVLEQVLENLSVTIKENH---AV 251

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSI 730
           I+   L +  A+ Q ++++F  ++SN + F S+ +  I ++A      ++  V++NG  I
Sbjct: 252 ITHDPLPTIPANPQHMVELFQNLISNGIKFRSEATPEIHIEAQLQESQWLIGVRDNGIGI 311

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P    + +F+ F     R +  G G+GL+I +  +  HGG++ + S
Sbjct: 312 PSKYAERIFSIFQRLHGRSKYPGTGIGLAICQKIVQCHGGNIWVES 357


>gi|326406735|gb|ADZ63806.1| osmosensitive K+ channel sensor histidine kinase [Lactococcus
           lactis subsp. lactis CV56]
          Length = 876

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 130/243 (53%), Gaps = 7/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE- 611
           R + +KNE   + ++++ + V+ +S++LR+PLT+I G   LL  +   ++N  Q Q +  
Sbjct: 631 REVQQKNEIQIEQEQLRVNLVRAISHDLRTPLTSISGHAKLLMKND-STINKLQIQELSA 689

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           YI   S  L+NLV ++L +  +D  I +L     ++++++ E  + +   + ++   + +
Sbjct: 690 YIYDDSMWLINLVENLLSITRLDEKI-ELKLEANIIDEVVEEALKHVDRHLKQHEFSLNL 748

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +  +     D   ++Q+   +++NA+ ++   S + L+  + N + +  V +NG  I 
Sbjct: 749 ADELLMAKM--DVALMIQVIVNLINNAVKYTPINSKIELQTKKINDELVLEVSDNGPGIT 806

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   + +F+ F ++ +R    +RG+GLGLS+ +S I  HGG + +  +      I  ++P
Sbjct: 807 DKAKEKIFDLFYTDENRQVDSKRGLGLGLSLCKSIILAHGGQIYVKDNQPNGAIIGFKLP 866

Query: 790 SKE 792
            +E
Sbjct: 867 LEE 869


>gi|289435761|ref|YP_003465633.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289172005|emb|CBH28551.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 591

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R  + +++ FV +VS+EL++P+T + GF + L    +    +   +++  I   S  L 
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EALLKKFLTIIKEESDRLH 417

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ DIL L+ ++   +  N  T+ ++D++++  ++I     E NI++           +
Sbjct: 418 RLIMDILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTVPPVII 477

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +R +L QI   +LSNA++++     V +K      + I  V +NG  IP      VF 
Sbjct: 478 ETNRDQLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTDNGIGIPTKDIDRVFE 537

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 538 RFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|257877615|ref|ZP_05657268.1| histidine kinase [Enterococcus casseliflavus EC20]
 gi|257811781|gb|EEV40601.1| histidine kinase [Enterococcus casseliflavus EC20]
          Length = 573

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 7/231 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R+ ++++  FV +VS+EL++P+T++IGFT+ L         + Q+ ++E I   +  L 
Sbjct: 345 IRQLEKMQKDFVGNVSHELKTPVTSLIGFTETLLDGAKEDPETLQT-FLEIIQKDAYRLK 403

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           NL+ DI+ L+  D+   +     I  ++LL +V Q+      +  +  +   +G     +
Sbjct: 404 NLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAAKKQLTFQF--EGPEPFIL 460

Query: 682 ADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + ++ LLQ I   ++ NA+ +S  G  + L  +  +   +F V++ G  I E+  + +F 
Sbjct: 461 STKKELLQPIVKNLVENAVTYSKPGGVITLSYSEQDDQLLFQVQDQGIGIDEEDQERIFE 520

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A      G GLGL+IV+ +  L GG + + S  +  +T    +P
Sbjct: 521 RFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGSTFTVTLP 571


>gi|197336880|ref|YP_002157952.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197314132|gb|ACH63581.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 864

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 132/248 (53%), Gaps = 16/248 (6%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  + +F   T+ +  E++   K EAL KA   K+SF+ ++S+E+R+PL  IIG +D+L 
Sbjct: 326 ADLIYSFNQETEYLEIEKS---KAEALAKA---KSSFLANMSHEIRTPLNGIIGMSDILT 379

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            + L  +   QS+YVE I  SS  LL L+NDILDL+ +++G + +      + ++  +  
Sbjct: 380 ETDLTPV---QSEYVETIDTSSQTLLLLINDILDLSKIESGNLVIVPQESNVEEVAYDTL 436

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTV--ILKA 712
             I +K  E  + +++     L   V  D  RL QI   ++SNA+ F+  G+ +  I   
Sbjct: 437 TVILSKATEKGLALQIDLANDLPELVMLDEHRLRQILMNLMSNAVKFTQDGAVILSINYQ 496

Query: 713 ARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            ++NG     FSVK+ G  I +D C+ +F  F        R+  G GLGL+I    + + 
Sbjct: 497 QKENGRGLLFFSVKDTGIGISKDKCEQIFEPFTQEDSSITRQFGGTGLGLAICRQLVEML 556

Query: 769 GGHVSISS 776
           GG + + S
Sbjct: 557 GGELKVDS 564


>gi|206978268|ref|ZP_03239146.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217959038|ref|YP_002337586.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|222095192|ref|YP_002529252.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|229138255|ref|ZP_04266850.1| hypothetical protein bcere0013_13760 [Bacillus cereus BDRD-ST26]
 gi|206743517|gb|EDZ54946.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217063404|gb|ACJ77654.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|221239250|gb|ACM11960.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|228645147|gb|EEL01384.1| hypothetical protein bcere0013_13760 [Bacillus cereus BDRD-ST26]
          Length = 603

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 142/292 (48%), Gaps = 33/292 (11%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 325 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 364

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   + Y + 
Sbjct: 365 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTTYYTDV 420

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L+ +V   +   M E ++++ + 
Sbjct: 421 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELIQQVYTKLLFSMEEKHLQVNID 480

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D  +  FV A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IP
Sbjct: 481 VDPSI--FVKANRSRIEQVVVNLLSNAIRYTPDGEKIQVSVIEMEDTVKVEIENTGNPIP 538

Query: 732 EDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ED  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 539 EDSLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 590


>gi|76364060|sp|P0C0F7|RPFC_XANC8 RecName: Full=Sensory/regulatory protein rpfC
          Length = 677

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 124 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 180

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +     
Sbjct: 181 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGTQ 240

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
           ++D        D   L Q+   ++ NA+ F+  G  V+L+  R +G         F V++
Sbjct: 241 VADDVPDLLKGDTAHLRQVLLNLVGNAVKFTEHGH-VLLRVTRVSGSAEDAVRLRFDVED 299

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
            G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG + 
Sbjct: 300 TGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIG 349


>gi|285018938|ref|YP_003376649.1| two component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283474156|emb|CBA16657.1| putative two component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1188

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + KQ  Y E I  + 
Sbjct: 799  KQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLATPL---DPKQRGYTESIRGAG 855

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            T LL LVND LDLA ++AG ++L+     L  L+ E+  ++   M + +    V+ +   
Sbjct: 856  THLLRLVNDALDLARIEAGRLELDQQPFDLGQLIAELA-AMMEPMAQGHGLTFVLDNAMP 914

Query: 678  GSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDM 734
                A  D  R+ QI   +L+NA+ F+ +GS  +  A       + F V + G  I  + 
Sbjct: 915  EQVTATGDATRVRQILLNLLNNAIKFTERGSVQLRVAPLQEFQGVRFEVVDTGPGINAEQ 974

Query: 735  CKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               +F RF  ++  R   R  G GLGL+I +      GG + + S
Sbjct: 975  QARLFQRFEQADGPRTAARYGGSGLGLAICQELAVAMGGRIDLQS 1019


>gi|229000253|ref|ZP_04159822.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
 gi|229007776|ref|ZP_04165364.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228753484|gb|EEM02934.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228759585|gb|EEM08562.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
          Length = 611

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D  +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ L
Sbjct: 376 RIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNIA-PQFLTVTQEETERMIRL 434

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           VN +L L+ +D+   +L    +   D  N V         +N I  +  S  K   F+  
Sbjct: 435 VNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVIFKRSFS--KKSRFIDM 492

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  ++ Q+   I+SNA+ +S +G TV  +  RD  D +  SV + G  IP++  + +F R
Sbjct: 493 DADKITQVLYNIISNALKYSPEGGTVTYR-LRDREDMLEISVSDQGMGIPKENVEKIFER 551

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A   Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 552 FYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 601


>gi|119351153|gb|ABL63471.1| ethylene receptor [Coffea canephora]
          Length = 740

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L ++N AL    R+A+     +N F+  +++E+R+P+  I+  + LL+ ++L
Sbjct: 314 ESMRARDLLMDQNVALDLARREAETAVRARNDFLAVMNHEMRTPMHAIVALSSLLQETEL 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L+     L+ L  EV   I 
Sbjct: 374 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIEPFDLHGLFKEVINLIK 430

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  + +   +RL+QI   ++ NA+ FS +G   I         
Sbjct: 431 PIASVKKLFVTLSMSSDLPEYAIGGEKRLMQIMLNVVGNAVKFSREGGISISASVAKSDS 490

Query: 710 LKAAR---------DNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+  R         DN  ++   VK+ GS I P+D+ K +F +F  +     +   G GL
Sbjct: 491 LRDPRAPDFFPGLSDNHFYLRVQVKDTGSGISPQDIPK-LFTKFAQSQSLAAKNSGGSGL 549

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ + S   G
Sbjct: 550 GLAICKRFVNLMDGHIWLESEGLG 573


>gi|119471230|ref|ZP_01613733.1| putative two-component sensor histidine kinase and response
           regulator hybrid [Alteromonadales bacterium TW-7]
 gi|119445696|gb|EAW26979.1| putative two-component sensor histidine kinase and response
           regulator hybrid [Alteromonadales bacterium TW-7]
          Length = 654

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 18/237 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  ER    K EA  ++   K+ F+ H+S+ELR+PL++I+G+T+LL  S      S+Q++
Sbjct: 130 VEGERVERLKAEAENRS---KDRFLAHLSHELRTPLSSILGYTELLMQSDF----SQQAE 182

Query: 609 -YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I  +   LL+L+ND+LDL+ + A  ++L  S + L+ +L +V   +   + +  +
Sbjct: 183 NELGVIYRNGKHLLSLLNDVLDLSKIAADKLELTPSEVNLDSMLADVYTLMRVSVLDKGL 242

Query: 668 RIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIF 721
            +K  SD  L   VA  D  R+ QI   +++NA+ F+ KG  V+ KA   + D      F
Sbjct: 243 ALKFESDQAL-PLVARLDATRVRQILINLINNAVKFTDKGEIVV-KAWTQHVDGTEMLFF 300

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           S+K++G  I  +  + +F  F  +++       G GLGL+I    ++   G++S+ S
Sbjct: 301 SIKDSGMGIAPEKQQLIFKPFEQIADVESRSVGGAGLGLAICAELLSRMQGNISLHS 357


>gi|308067293|ref|YP_003868898.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305856572|gb|ADM68360.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 481

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 10/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L E+ + L  A + K+ F+  +S+ELR+PL +II    ++          +  QY
Sbjct: 215 KAKVILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQIINEQGKELDEDELDQY 274

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I AS   LL L+NDILDL+ V+AG M++    + + ++   +         + N+  
Sbjct: 275 SDLIYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQVMMMHFEVTAKDKNLEF 334

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDF-IF 721
            +     + + + +D +R+ QI   +LSNA  F+ +G      ST  L      GD+ +F
Sbjct: 335 SLKEHEPIPNEIRSDSKRVQQILRNLLSNAFKFTHEGRILLEISTQHLNQKGQEGDWVVF 394

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +VK+ G  I +     +F  F        R+  G GLGLSI   F  L GG + + S + 
Sbjct: 395 AVKDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGFIRLESEEG 454

Query: 780 GVTTINCRIP 789
             +T +  +P
Sbjct: 455 KGSTFSLYLP 464


>gi|300865287|ref|ZP_07110101.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300336760|emb|CBN55251.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1581

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 42/286 (14%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            + D  +AE AL +  E    A+  K+ F+ ++S+ELR+PL  I+G+  L+K  K  ++  
Sbjct: 1063 ICDRKQAESALQQAKEVAEAANRAKSEFLANMSHELRTPLNGILGYVQLIKADK--NITE 1120

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             Q + +  I      LL L+ DILDL+ ++A  M+L+     L + +  +      +  +
Sbjct: 1121 DQQESLGNIQQCGEHLLTLIEDILDLSKIEARKMELSPVEFNLPNFVKNIADLFQMRSAQ 1180

Query: 665  NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---- 719
             NI         L ++V  D +RL Q+   +L NA+ F++ GS        + GD+    
Sbjct: 1181 KNIAFTCEQISSLPTYVCGDDKRLRQVLINLLGNAVKFTNSGSVTFRVGYVEAGDWGETG 1240

Query: 720  --------------------------------IFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
                                             F V++ G  I E+  + +F  F   + 
Sbjct: 1241 DWGLGITSKKEQGTTKTEQLTAINYPLPITKIRFQVEDTGIGIEENKLEEIFLPFHQVSD 1300

Query: 748  RGQR-RGVGLGLSIVESFINLHGGHVSISSS--DEGVTTINCRIPS 790
            R     G GLGLSI    + + GG +S+ SS     V  I+  +PS
Sbjct: 1301 RVYSIEGTGLGLSISYKLVKMMGGEISVKSSLGKGSVFWIDLELPS 1346


>gi|266625718|ref|ZP_06118653.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288862376|gb|EFC94674.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 518

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 120/241 (49%), Gaps = 19/241 (7%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           + +A + K+ F+  VS+E+R+PL ++IG   LLK ++   LN KQ +Y+  +  +S  LL
Sbjct: 283 MAEAMKAKDEFLASVSHEIRTPLNSVIGCETLLKQTR---LNEKQREYLACMETASKQLL 339

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           ++VN++LD A+++   M++  +   L +   +++ S      E  +   V +D K+   V
Sbjct: 340 DMVNELLDYASLEKK-MEIQETEWSLREAAKDLENSFCCLAVEKGLEFSVEADDKVPEQV 398

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            AD  +   I   ++SNA+ F+ +G      +  K   D G  +  V++ G  I ++  +
Sbjct: 399 LADEGKFRLIAGNLISNAIKFTDEGLVHAELLWEKGTEDEGVLVLRVEDTGRGIKKEDEE 458

Query: 737 SVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F  F     RG +       G GLGL+I +    L  G +++ S     +    RIP 
Sbjct: 459 RIFEAF----ERGSKEESAPVAGTGLGLAICQRTAGLLRGSLTVESCWRKGSAFTARIPM 514

Query: 791 K 791
           K
Sbjct: 515 K 515


>gi|297568633|ref|YP_003689977.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924548|gb|ADH85358.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 407

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 23/247 (9%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D  R    L E  +   +A  +K+ F+ ++S+ELR+PL  IIG ++++       + + 
Sbjct: 147 VDLFRMVEELKEARDQALEASRLKSEFIGNMSHELRTPLNQIIGLSEVMLDQP--EMLAD 204

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y++ I  ++  L   +N++L+L+ +D+G + L+     L++LL  ++Q    +  E 
Sbjct: 205 HRNYLQTIVKAAWGLNGTLNNVLELSQLDSGQVDLSEQDFQLDELLTVIRQHYQAEARER 264

Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------ 718
            + + V+   G       D  RL Q+   +L NA  F+ +GS  + K  R+NG+      
Sbjct: 265 GLELTVVRMPGVPAQLRGDSARLEQVLQLLLDNAFKFTEQGSIAV-KVERENGNDHGNGG 323

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHG 769
                  V + G  IP +  + +F  F      ++  H     G GLGL++ +  + L G
Sbjct: 324 VLRLRVLVSDTGCGIPAEKQECIFASFRQADGSLTRCH----GGAGLGLAVAKRLVKLLG 379

Query: 770 GHVSISS 776
           G +S++S
Sbjct: 380 GEISVTS 386


>gi|197124505|ref|YP_002136456.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196174354|gb|ACG75327.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 376

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 137/287 (47%), Gaps = 26/287 (9%)

Query: 511 RKSLQGTLELLSDSVLEYSII----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           +++L+GT   L   +   + +    PL   + ++   +VTD+              R+A+
Sbjct: 108 KRALEGTARRLELPIQRRTYLAALSPLLRGEVLVLLRDVTDA--------------RRAE 153

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             +  FV + S+ELR+P+  I    + L +  +    + ++ +VE ++  +  L  L  D
Sbjct: 154 ATRRDFVANASHELRTPIAAIRAAAETLLSGAVEDPAAARA-FVEIVARHAERLSRLTQD 212

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           +LDL+ +++       + + L  L  +V +  A+      + ++  ++   G+ V AD +
Sbjct: 213 LLDLSRIESRQWTFELAPVELGALARQVLELFASAARPKGLALR--AEVPAGAVVRADGR 270

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
            L Q+   ++ NA+ +++ GS V + AARD   ++ SV + G  I       +F RF  V
Sbjct: 271 ALEQVLVNLVDNAVKYTAAGS-VTVSAARDGDAWVVSVSDTGPGIERHHLPRLFERFYRV 329

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +     + G GLGL+IV+  +   GG V + S   G T +  R+P+
Sbjct: 330 DSGRSRDQGGTGLGLAIVKHLVQGMGGEVGVESGAGG-TRLWARLPA 375


>gi|88858301|ref|ZP_01132943.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
 gi|88819918|gb|EAR29731.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
          Length = 884

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 126/229 (55%), Gaps = 11/229 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+A+   N+A  +A ++K+ F+ ++S+E+R+PLT I+GFT+ + T +    + K++Q++ 
Sbjct: 396 EKAM---NQA-EQASQLKSRFLANMSHEIRTPLTAIMGFTEQMLTKEP---DDKKAQHLN 448

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  +S  LL L+N+ILDL+ ++A  +++    + L+ L+ ++   +     + N+   V
Sbjct: 449 TVLRNSKHLLELINNILDLSKIEAEKLEVERQPLELSQLIEDINSVVHVLAQDKNLTFAV 508

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSS 729
             D  L  +  +D  RL Q+   + +NA+ F+++GS T+ + A        F V++ G  
Sbjct: 509 EYDYPLPRTLNSDITRLKQVLLNVCTNAVKFTAEGSVTLAISAKHSLSQLEFKVQDTGIG 568

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +     + +F  F        R+  G GLGL I ++   L GG ++++S
Sbjct: 569 MSNQELERIFKPFEQADSSTTRKFGGTGLGLCISKNLAQLLGGDITVTS 617


>gi|325286241|ref|YP_004262031.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
 gi|324321695|gb|ADY29160.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
          Length = 478

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 137/248 (55%), Gaps = 15/248 (6%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V+   A+  +N+A  +++++K++F+ ++S+E+ +P+ +I+G TDLLK       N++ + 
Sbjct: 212 VKHNNAVAARNKA-EQSEQLKSAFLANISHEIGTPMYSILGTTDLLK-----DYNTEDNG 265

Query: 609 Y---VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Y   ++ I  +   LL+++ DI++++ V++G+M +  +   +   + E+   + T++ E 
Sbjct: 266 YQKSLQLIEENGNKLLDIIADIVNISKVESGLMPITPTAFNVKTCVEEIYTKLKTEVVEK 325

Query: 666 NIRI---KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +I      +IS  +      D++++  + + ++ NA+ ++ KGS  I     + G   F 
Sbjct: 326 DIDFTLTNLISTNE-SLIYTDKEKVEAVLNHLVKNAIKYTEKGSINIKCHLPEEGIVAFE 384

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  IP+D  +S+F  F  V    +    G G+GL+I +++  + GG +S+ ++ + 
Sbjct: 385 VKDTGIGIPKDKFRSIFKAFYQVDTDQKNALHGSGVGLAISKAYTEMLGGKLSLKNNQDS 444

Query: 781 VTTINCRI 788
            +T    I
Sbjct: 445 GSTFGFTI 452


>gi|322831385|ref|YP_004211412.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
 gi|321166586|gb|ADW72285.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
          Length = 916

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT   LKT     L+  Q+ Y++ I  S+  LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP----LSPTQADYLQTIERSANHLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L +    L ++L+EV   +A   H+  + + + + +    + 
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHTAHDKGLELTLNVHNNVPENV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + +L NA+ F+  G+  I    R       +    + + G  I E    
Sbjct: 402 LGDPMRMQQVVTNLLGNAIKFTETGNIDINVELRSQNNLQVELEVQIHDTGIGISERQQS 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +S  S
Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFYS 503


>gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 832

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 19/233 (8%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  +I  T LL  +   +LN++Q  YVE I +SS  LL ++NDILD +
Sbjct: 157 FLANMSHEIRTPMNGVIAMTGLLLET---NLNNEQRSYVETIHSSSESLLTIINDILDFS 213

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +++G ++L +    L   + E    +ATK  E  + +    D  + S V  D  RL Q+
Sbjct: 214 KIESGKLELEHRPFNLRMGVEEALDLLATKAAEKKLDLAYQMDDDIPSHVHGDVTRLRQV 273

Query: 691 FSKILSNAMDFSSKGSTVI--------LKAARDNGDFI---FSVKNNGSSIPEDMCKSVF 739
              +LSN + F+++G   +         +   D+   +   F+V++ G  I       +F
Sbjct: 274 LVNLLSNGIKFTNEGEVFVHVKIHSASPEPTADDATRLQLHFTVRDTGIGIHPTQIDRLF 333

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F S A     R   G GLGL+I +  + L GG + + S+ +  +T +  IP
Sbjct: 334 KSF-SQADASTTRQYGGTGLGLAISKRLVELMGGKMWVESTLQRGSTFHFLIP 385


>gi|71907563|ref|YP_285150.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847184|gb|AAZ46680.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1015

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 16/231 (6%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE----YISASSTILLN 622
           +IK+ F+ ++S+E+R+PL  ++GF      +++G  N++ S+        I  S   LL 
Sbjct: 643 KIKSEFLANMSHEIRTPLNGVLGF------AQIGYRNAENSEKARDSFAKIQLSGNRLLG 696

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSF 680
           ++NDILD + ++AG +++  + +VL++++      +  +     I ++V    D  L + 
Sbjct: 697 VINDILDFSKIEAGKLRIEQTEVVLSEVVEHALDLLRERARAKQIELQVELAPDLPL-TC 755

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           ++D  R+ Q+   ILSNA+ F+  GS  +    RD G  +F V + G  +  +   ++FN
Sbjct: 756 ISDPLRMGQVLLNILSNAVKFTEVGSVTLSVNCRD-GMLLFKVADTGIGMSAEQIGTLFN 814

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F        R+  G GLGL+I +  + L  G VSI S     T++   +P
Sbjct: 815 PFHQVDASASRKFGGTGLGLAISKRILELMNGKVSIDSLPGVGTSVEFCLP 865


>gi|16127421|ref|NP_421985.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221236230|ref|YP_002518667.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424865|gb|AAK25153.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220965403|gb|ACL96759.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 642

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 12/219 (5%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K+ F+ ++S+E+R+P+  ++G   LLKT KL   +  +    E +S    +L  L+ND
Sbjct: 264 ETKSQFLANMSHEIRTPMNGVLGVLHLLKTEKLS--DDGRRLLTEALSCGE-MLSALLND 320

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           I+D + ++AG ++L+   +   +LL  V   +  +     + ++V +   LG    D  R
Sbjct: 321 IIDFSKIEAGKLELSAEPVCPAELLRGVADMLRAQAETKGLYLRVEASDDLGWVATDPLR 380

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD-----FIFSVKNNGSSIPEDMCKSVF 739
           L Q    ++ NA+ F+ +G  V   + R  D+ D       F + + G  I E+    +F
Sbjct: 381 LRQALFNLIGNAVKFTLEGGVVARLSGRRIDSPDGARLRLRFEIDDTGVGIGEEAGARLF 440

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            RF        RR  G GLGL+I      L GG V   S
Sbjct: 441 ERFRQGDGSTTRRFGGSGLGLAICRRLAELMGGEVGFES 479


>gi|85543001|sp|P0C0F6|RPFC_XANCP RecName: Full=Sensory/regulatory protein rpfC
          Length = 677

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 124 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 180

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +     
Sbjct: 181 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGTQ 240

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
           ++D        D   L Q+   ++ NA+ F+  G  V+L+  R +G         F V++
Sbjct: 241 VADDVPDLLKGDTAHLRQVLLNLVGNAVKFTEHGH-VLLRVTRVSGSAEDAVRLRFDVED 299

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
            G  +P DM   +F  F   A  G  R   G GLG +I +  +   GG + 
Sbjct: 300 TGIGVPMDMRPRLFEAF-EQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIG 349


>gi|293603699|ref|ZP_06686118.1| sensor histidine kinase [Achromobacter piechaudii ATCC 43553]
 gi|292817873|gb|EFF76935.1| sensor histidine kinase [Achromobacter piechaudii ATCC 43553]
          Length = 478

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 13/223 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST---ILLNLVNDIL 628
           F   +++ELR+P+TN++  T +     LG   S + +Y E + ++      +  ++ D+L
Sbjct: 260 FSADIAHELRTPVTNLVTQTHV----ALGQPRSNE-EYREILYSNLEEFDRMGRMIGDML 314

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA  +     L  STI L++L+  +         ++ I + V   G +GS  ADR+ L 
Sbjct: 315 FLAQTENDPRNLRLSTIDLSELVRSLFDYFEALAEDSGITLGV--KGAIGSIAADREMLT 372

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           +  + +LSNA+  + +G ++ +  ++D      SV N G  IPE     +FNRF  V  A
Sbjct: 373 RALNNLLSNAIRHTPRGKSITVLLSQDEQWTTISVVNPGERIPERDLPKLFNRFYRVDPA 432

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    G GLGL+IV+S    HGG V+++SS E VT  +  +P
Sbjct: 433 RQRNTAGAGLGLAIVKSIAEAHGGSVAVTSS-ELVTRFDLVLP 474


>gi|162451352|ref|YP_001613719.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161161934|emb|CAN93239.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 636

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYV 610
           +RA  E  EA+R+    +   +  V+++LR+PL+ I+    LLK      ++  K    V
Sbjct: 399 KRARAEAQEAVRQ----REQMLGIVAHDLRNPLSAIMLRAALLKRELASRVDEEKWRDGV 454

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  ++     L+ D+LD+A++DA  + +  +   ++DL+ +  +++       ++ + 
Sbjct: 455 RTIERAARHSNRLIADLLDVASIDAHRLSILPAPHEVSDLVADATETVRLGATGRSLSVH 514

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V     L   +ADR R++Q+ S +L NA  F+  G T+ ++A   +G+    V+++G  I
Sbjct: 515 VEVPTDLPRVLADRDRVVQVLSNLLGNAHKFTPDGGTIGVRAEALDGEVGIHVRDSGVGI 574

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +    +F+ + +  +  Q RG GLGL+I    +  HGG + + S
Sbjct: 575 AAEHLSRIFDPYWTRPNNRQ-RGTGLGLAIARGIVQAHGGRIWVES 619


>gi|13472735|ref|NP_104302.1| two-component sensor KdpD [Mesorhizobium loti MAFF303099]
 gi|14023482|dbj|BAB50088.1| two-component sensor; KdpD [Mesorhizobium loti MAFF303099]
          Length = 907

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 8/262 (3%)

Query: 534 PNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P  Q +L  +    +V  ER    A  ++ +   +AD ++++ +  +S++L++PL+ I+G
Sbjct: 630 PEQQRLLDALADQAAVAIERIQLVADVDRAKLAAEADRLRSALLTSISHDLKTPLSAIMG 689

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               LK          +++ +  +   S  L   + ++LD+  +++G M+ NY+   + D
Sbjct: 690 AAGTLKEFAPDLPEQDRAELLSTVIDESERLNRFIANLLDMTKIESGAMEPNYALHYVGD 749

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++            E+ I + +  D  L     D     Q+   +L NA  +S  GST+ 
Sbjct: 750 IVGTALNRARKITSEHKIEVDIPPD--LPMLKLDPVLFEQVLFNLLDNASKYSPPGSTIR 807

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLH 768
           L+   DNG  I  + + G  IP    + VF+ F       Q R G GLGLSI   F+   
Sbjct: 808 LQGWADNGSVIVQIMDEGPGIPSHDLERVFDTFYRVRKGDQVRAGTGLGLSICRGFVESM 867

Query: 769 GGHVSISS-SDEGVTTINCRIP 789
           GG +S ++ +D        R+P
Sbjct: 868 GGTISAANRTDRPGAAFTIRMP 889


>gi|303240443|ref|ZP_07326960.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592008|gb|EFL61739.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 411

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 6/227 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + + K+ E +  F+   S+EL++PLT I+  TD+L   K  ++ S Q ++++YI   ST 
Sbjct: 183 KPVEKSWEQQRQFIADASHELKTPLTVILANTDVLAAHKGETIQS-QLKWLDYIKTESTR 241

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           +  LVND+L LA  DA    +  S    +DL+        +  +E    ++  SD K   
Sbjct: 242 MKGLVNDLLFLAKSDASRNTVVTSIFNFSDLVWSCVLPFESIAYEQGKDLQ--SDIKSDI 299

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           SF  D  +L Q+   +L NA  +S +   + +  ++     +  + N+G  IP      +
Sbjct: 300 SFKGDEGKLKQLIMILLDNACKYSDEKGVIKINLSQKQDKILLEITNSGEPIPAQHLPHL 359

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F RF        R   G GLGLSI ++ + +H G +S++S+ E  TT
Sbjct: 360 FERFYRADESRARELGGYGLGLSIAQNIVEMHHGKISVTSTKEAGTT 406


>gi|253577301|ref|ZP_04854619.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843305|gb|EES71335.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 586

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 11/236 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +RK + +++ FV +VS+EL++P+  + GF + L    +    + +S +++ I      L 
Sbjct: 347 IRKLERMRSEFVANVSHELKTPIAAVKGFAETLLAGGVKDEETTRS-FLQIIYDEGDRLN 405

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+L+L+ +++  + L Y+ + L++L + + + +     + +I +    D     F+
Sbjct: 406 RLIGDLLELSKIESKRVPLEYAPVQLSELFDSLYEVLLPAAEKKSISMS--HDVPEHLFI 463

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSVKNNGSSIPEDMC 735
            AD  RL QIF  +LSNA+ +S +G  V     I+    D       V + G  IP+   
Sbjct: 464 EADEDRLRQIFMNLLSNAISYSLEGGKVRVSASIIGEGGDEEKVRILVSDTGIGIPKKDL 523

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F RF  V  A      G GLGLSIV+  ++LH G + + S     TT    +P
Sbjct: 524 PRIFERFYRVDKARSRSSGGTGLGLSIVKHLVDLHRGTIRVESKVGEGTTFILELP 579


>gi|218886232|ref|YP_002435553.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757186|gb|ACL08085.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 500

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 133/306 (43%), Gaps = 20/306 (6%)

Query: 495 DGWDLFAAIITSFDDERKSLQG---------TLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
           DG +L   I   +  E  S+ G         T+E + +   ++   P    +     +  
Sbjct: 184 DGLELTRRIRERYPREALSIMGVSVHAERPLTVEFIKNGADDFITKPFLREELYCRVLQN 243

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            ++V   R L E N+       +KN F+   +++LR+P+  I GF+ LL    LG L   
Sbjct: 244 VETVERARTLVELND-------VKNRFLGMAAHDLRNPINGIRGFSRLLLDGVLGPLTDD 296

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   +  +  +S  +L LVND+LD+  +++G + L  +   L  L  E     +      
Sbjct: 297 QRSVLGTMHQASNEMLQLVNDLLDVTVIESGRLDLVLAPGDLAVLAAERLSFASLAAGAK 356

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NIRI+          + D +R+ Q+F  +LSNA+ F+   + + +    +  + +F V +
Sbjct: 357 NIRIE--KQFAHAQCMFDPRRMAQVFDNLLSNAVKFTPPQTRISVAVRVEGAEAVFEVAD 414

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +  + +F+ F  +S          GLGL+IV+  +  HGG V + S       
Sbjct: 415 AGPGILPEERERMFHSFEKLSARPTAGEASTGLGLTIVKRIVTAHGGRVWVESEPGNGAI 474

Query: 784 INCRIP 789
               +P
Sbjct: 475 FRVAVP 480


>gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1364

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 15/244 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++ +    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L
Sbjct: 618 VDLIEQKLQEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---L 674

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  V  I  S+  LL ++NDILD + ++AG + L  +   LN L + + + + + +
Sbjct: 675 PGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSL 734

Query: 663 HENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
               + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 735 SAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGEL 852

Query: 773 SISS 776
            + S
Sbjct: 853 EVES 856


>gi|167469341|ref|ZP_02334045.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis FV-1]
          Length = 616

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 127/250 (50%), Gaps = 18/250 (7%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +++Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DAEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   +     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           K I + +L      +AD  RL QI   ++ NA+ F+ +G  V+      N   IF V+++
Sbjct: 379 KFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLIFEVEDS 438

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT- 782
           G  IPED    +F  +     R   R   G G+GL++ +      GG +++ S+ +GV  
Sbjct: 439 GMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST-QGVGS 497

Query: 783 --TINCRIPS 790
             T+  + P+
Sbjct: 498 CFTLTIKAPA 507


>gi|189423637|ref|YP_001950814.1| chemotaxis protein CheR [Geobacter lovleyi SZ]
 gi|189419896|gb|ACD94294.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Geobacter
            lovleyi SZ]
          Length = 1193

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 122/255 (47%), Gaps = 10/255 (3%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++++  R E+ +    EA   A+  K  F+ ++S+E+R+PL  I+G + LL  + L    
Sbjct: 786  DLSEQKRVEQEIRAAKEAAESANRAKTQFLANISHEVRTPLNGIMGMSHLLHMTPLAD-- 843

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q  Y+ ++  S+  LL+++ND+LDL  +++G      +   L+ L  ++ +       
Sbjct: 844  -EQQDYLRHLDDSAQSLLSVINDLLDLTRIESGGFGTEQADFQLDQLARDILRIHQPVAQ 902

Query: 664  ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
               + +++ ++DG  G       RL Q+   ++ NA+ F+ +G  V+    +     +  
Sbjct: 903  RKGVLLQLELADGMPGLLRGVPLRLKQVLHNLVGNAVKFTDQGRVVLSISPIIVPGQSLR 962

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              F+V ++G  +  +  K +F+ F        RR  G GLGL+I      L GG + + S
Sbjct: 963  VRFAVCDSGIGMEPETIKRIFDPFSQADESISRRYGGTGLGLTICRRLTELMGGTIEVES 1022

Query: 777  SDEGVTTINCRIPSK 791
            +    +     +P K
Sbjct: 1023 TPGQGSCFTVILPMK 1037


>gi|161521751|ref|YP_001585178.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189352086|ref|YP_001947713.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160345801|gb|ABX18886.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189336108|dbj|BAG45177.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 1001

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 132/265 (49%), Gaps = 18/265 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T   + E+ L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+  + 
Sbjct: 490 LCTLTDITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAP 549

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---- 654
           L     ++   ++ I++SS  LL +++D+LDL+  ++  M +      + D+L+++    
Sbjct: 550 LAPTERRR---LDTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFY 606

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LK 711
           +   + K  E   R+   ++DG    +V D  RL QI S ++ NA+ F+ +GS  I   +
Sbjct: 607 RPLASAKGLELTCRVAPELADG----YVGDPVRLRQIVSNLVDNAIKFTERGSVSIDAQR 662

Query: 712 AARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
             R  G     ++  + G  IP D   ++F+ ++       RR  G GLGL +      L
Sbjct: 663 VVRGAGGARVEIRVADTGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIATL 722

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
             G + + S +   TT+   +P  E
Sbjct: 723 MHGDLLVDSREGEGTTMCVTLPLPE 747


>gi|330831029|ref|YP_004393981.1| Virulence sensor protein BvgS [Aeromonas veronii B565]
 gi|328806165|gb|AEB51364.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565]
          Length = 1413

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 121/511 (23%), Positives = 222/511 (43%), Gaps = 65/511 (12%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL-- 355
            E  +N+QL     +L++L   +A+ D  + +   N+++ +      AFL    S++EL  
Sbjct: 544  EDKLNEQLLFVQTLLNSLPTMVALRDSEQRITLCNQAYRD------AFLGAGSSSEELQN 597

Query: 356  -LEFLRSANKLPEQLNWKTWK--ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGG 411
              E LR++    E+L W+T +  E   S  ++           +G   HVI    P R  
Sbjct: 598  MPETLRNSVLEEERLVWQTGQDLEGAGSNLRA-----------DGTPCHVIYAKRPYRDP 646

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA--FRSLWKT 469
               M   LTV  D+ ++     +   +  + L++          I  S P   ++ LW+ 
Sbjct: 647  DGNMLGVLTVLTDV-SRIKEAEERARQAENRLTQ----------ITDSMPGVVYQYLWQG 695

Query: 470  E-ENRLSPGTHIRN--IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
              + R    +   +  + A+    +N   G ++F     +  D    +    E L+   L
Sbjct: 696  PGKGRFLYASQGASEILGASRQELFNAESGCEVFGFTEEALQDFVSKVANHAETLAPLDL 755

Query: 527  EYSIIPLPNAQTML----TFV--------------NVTDSVRAERALTEKNEALRKADEI 568
            E  +   P+    L     FV              ++T   + E  L E      +A + 
Sbjct: 756  EVKV-ERPDGDRYLQVRGNFVRQEQQALILNGVIQDITALKQQEYELREARAYAEQAMQA 814

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            ++ F+  +S+ELR+P++ + G  +LL+ S+L   N  Q   V  +  S+  LL LVNDIL
Sbjct: 815  RSRFLATMSHELRTPISGMHGMLELLQMSEL---NDDQRFMVRNVVTSTNNLLYLVNDIL 871

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            D + ++AG ++LNY +  L  ++ +  +  A   H   + + +  +  +  +   D  R+
Sbjct: 872  DFSKIEAGQLQLNYQSSRLQTVICDAIRGHAALAHNKGLNVVLEWEHHVPDWADIDGVRI 931

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             Q+ S +L+NA+ F+ +G   I + +  +     SV + G  I E+    +F  F     
Sbjct: 932  GQVISNLLNNAVKFTEQGGITI-RVSYLSEQLTISVSDTGIGIAEEKQALLFTPFEQVES 990

Query: 748  RGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGL+I E  +   GG ++++S
Sbjct: 991  DINRRFGGTGLGLAICEQLVCKMGGALTLTS 1021


>gi|325927603|ref|ZP_08188833.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
 gi|325542037|gb|EGD13549.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
          Length = 1181

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 23/237 (9%)

Query: 552  ERALTEKNEALRKADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  LT++ + L +   I K+ F+  + +E+R+P+T ++G ++LL  + L   N+KQ  YV
Sbjct: 796  EWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLATPL---NAKQRGYV 852

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSIATKM----- 662
            + I  + T LL LVND LDLA ++AG ++L    +    L   L      IA        
Sbjct: 853  DAIRKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELAHFMHPIADARGLRLE 912

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N +   V+        V D  R+ QI   +L NA+ F+ +G  V L  ++      F 
Sbjct: 913  YRNQLPPHVV-------VVGDATRVRQILINLLGNAIKFAERGE-VSLTVSQHGDALRFK 964

Query: 723  VKNNGSSIPEDMCKSVFNRF-VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            V++ G  I  +  K +F RF      R   R  G GLGL+I +       G + + S
Sbjct: 965  VRDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVRS 1021


>gi|313636361|gb|EFS02143.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           S4-171]
          Length = 591

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R  + +++ FV +VS+EL++P+T + GF + L    +    +   +++  I   S  L 
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EALLKKFLTIIKEESDRLH 417

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ DIL L+ ++   +  N  T+ ++D++++  ++I     E NI++           +
Sbjct: 418 RLIMDILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVII 477

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +R +L QI   +LSNA++++     V +K      + I  V +NG  IP      VF 
Sbjct: 478 ETNRDQLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTDNGIGIPAKDIDRVFE 537

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 538 RFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|313631990|gb|EFR99108.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           N1-067]
          Length = 591

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R  + +++ FV +VS+EL++P+T + GF + L    +    +   +++  I   S  L 
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EALLKKFLTIIKEESDRLH 417

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ DIL L+ ++   +  N  T+ ++D++++  ++I     E NI++           +
Sbjct: 418 RLIMDILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVII 477

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +R +L QI   +LSNA++++     V +K      + I  V +NG  IP      VF 
Sbjct: 478 ETNRDQLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTDNGIGIPAKDIDRVFE 537

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 538 RFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 590


>gi|312881107|ref|ZP_07740907.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
 gi|310784398|gb|EFQ24796.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
          Length = 695

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 125/252 (49%), Gaps = 20/252 (7%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGS 601
           +++T   +AE  L    E    A   K++FV  +S+E+R+PL  I+G+T LLK   ++ +
Sbjct: 347 LDITPRKQAEEILRHAKENAEAASRAKSTFVARISHEIRTPLNAILGYTQLLKEREEVRA 406

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +  ++++ +S S   LL +V D+L+++ ++AG + L         LL ++++ +  +
Sbjct: 407 LPGELREWLDTVSRSGHHLLTVVEDVLEMSRIEAGRLVLQERDFDPRALLGQIEEMLRLR 466

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------L 710
             E ++R+ +  +D    S  AD  ++ Q+   ++ N++ F+++GS  +           
Sbjct: 467 AEEKSLRLFLERTDTLPRSLHADEGKVRQVVINLVGNSLKFTTQGSVTLSVGWTPLEGSW 526

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLH 768
           +A R        V++ G  IP  +   +F  F     RG   R G GLGL+I   F    
Sbjct: 527 EAPRVK--VWIRVEDTGPGIPLGLTDKLFEPF----ERGLEGRGGTGLGLAISRQFARFL 580

Query: 769 GGHVSISSSDEG 780
           GG + +  +  G
Sbjct: 581 GGDLILERNAPG 592


>gi|313114103|ref|ZP_07799655.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623512|gb|EFQ06915.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 449

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 122/255 (47%), Gaps = 16/255 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V   +S+ ++R L E NE +R+       F  +VS+EL++PLT+I G+ +L++T     
Sbjct: 203 LVPFAESIHSDRILRENNEKMRQ------EFTANVSHELKTPLTSISGYAELIETGIAKP 256

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +     + + I   ++ ++ LVNDIL L+++D      +   +   DLL   K  +  +
Sbjct: 257 EDVP--GFAQKIHVEASRMIQLVNDILQLSSLDNASEAGSEPEMETVDLLTVAKDCV--E 312

Query: 662 MHENNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG 717
             + N R   IS   LG       +R  L ++   +  NA+ ++  G  V I  A   +G
Sbjct: 313 RQKLNARRAYISLNCLGESALVHGNRALLDELCQNLCDNAIRYNRPGGKVQITTACSRDG 372

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +V +NG  IP++   SVF RF  V  +      G GLGL+IV+    +H   + + 
Sbjct: 373 HCTLTVADNGIGIPKEAQSSVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLE 432

Query: 776 SSDEGVTTINCRIPS 790
           S  +  TTI    P+
Sbjct: 433 SQVDVGTTITVTFPT 447


>gi|281424136|ref|ZP_06255049.1| sensor histidine kinase/response regulator [Prevotella oris F0302]
 gi|281401793|gb|EFB32624.1| sensor histidine kinase/response regulator [Prevotella oris F0302]
          Length = 634

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 121/248 (48%), Gaps = 19/248 (7%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +T + E  R  D++K  F  ++S+ELR+PL+ I+    +L + +    +  +   ++ IS
Sbjct: 94  VTREAEQARHLDKMKLDFFANISHELRTPLSLILSPLSVLISQEK---DETKRTKLQLIS 150

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++T LL LVN +LD   +D    ++    +V  D++  + +   T       RI +   
Sbjct: 151 RNATRLLGLVNQLLDFRKIDEDCQQMK---LVTGDVVAFIHEICNTFQQLMGPRISLTFY 207

Query: 675 GKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGD-------FIFSV 723
             + S +   D  +L +I   +LSNA  F+  G    V L+    +G+           V
Sbjct: 208 ASINSLMMSFDDDKLRKIMDNLLSNAYKFTPNGGRIDVSLRVVSQHGNGQDGERQLEIKV 267

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + GS I ++  K VF+RF    H  +    G G+GLS+V+ F+ +HGG +S+S +  G 
Sbjct: 268 SDTGSGIDDEAKKHVFDRFYQAPHTDEIAASGSGIGLSLVKKFVEMHGGTISVSDNPGGG 327

Query: 782 TTINCRIP 789
           T   C IP
Sbjct: 328 TVFICLIP 335


>gi|270263998|ref|ZP_06192266.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
 gi|270042191|gb|EFA15287.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
          Length = 908

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     ++  Q+ Y++ I  S+  LL
Sbjct: 286 QEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTE----MSVTQTDYLQTIERSANNLL 341

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            ++ND+LD + ++AG + L +    L + L+EV   +A   HE  + + + + +      
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQV 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  RL QI + +L NA+ F+  G+  I   L+  ++   +    + + G  I E    
Sbjct: 402 IGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGLQERQVELEVQIHDTGIGISERQQS 461

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL I +  +   GG +   S
Sbjct: 462 QLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHS 503


>gi|265750539|ref|ZP_06086602.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237435|gb|EEZ22885.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 634

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 11/227 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  E  L  K +A  +++ +K +F+ ++S+E+R+PL  I+GF+ +L +       ++++Q
Sbjct: 392 VSGEELLVAKEKA-EESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSP--AEKAQ 448

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL+L+NDILD++ +++G +K  +      D++   + +++T  +     
Sbjct: 449 YCDIIQKNSDLLLHLINDILDISRMESGKIKFVWEEC---DVVELCQTALSTAEYGRKTS 505

Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
              + +  + S V   D QRL Q+   +LSNA  F+  GS  +  A  + +     SV +
Sbjct: 506 ALFLFETPVASLVIKTDAQRLKQVLINLLSNAAKFTPSGSIKLAIAIDKQHQQLELSVSD 565

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G  IP D    VF RF       Q  G GLGL+I    +   GG +
Sbjct: 566 TGCGIPSDKSDRVFERFEKLNEYSQ--GTGLGLAISRLIVENLGGKI 610


>gi|229173211|ref|ZP_04300760.1| Sensor histidine kinase [Bacillus cereus MM3]
 gi|228610295|gb|EEK67568.1| Sensor histidine kinase [Bacillus cereus MM3]
          Length = 364

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 134 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 192

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      ++ E NI  +     +    +A
Sbjct: 193 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQVQEANIECRPSFPSQKLMVLA 252

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  + L A   N      + N G  IP      +F RF
Sbjct: 253 DGDKLVRVFENLIINAIAYGNDGGYIDLAAYESNNMITIDITNYGQPIPSTDLPHIFERF 312

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 313 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 354


>gi|172057086|ref|YP_001813546.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989607|gb|ACB60529.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 679

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 17/235 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K+  V  VS+ELR+PL++I GFT+L+   KL    +K+  Y++ I   S  L +L
Sbjct: 445 EVDRMKSELVSTVSHELRTPLSSIYGFTELMLKRKLDPERNKR--YLQTIHDESKRLTDL 502

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-----ATKMHENNIRIKVISDGKLG 678
           V+D L++  +++G  K +Y   V  DL++ V++       +T+ H    R+++  D    
Sbjct: 503 VSDFLNVQRMESG--KHSYDKEVF-DLIDTVREQTRFYQASTEQH----RLQLDVDENHE 555

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             + AD+  + Q+   +L NA+ +S  G  V++     +     SV++ G  IP      
Sbjct: 556 FLIHADKNSMKQLLGNLLHNAIKYSPDGGDVVISLTHHHNQIELSVRDFGLGIPSSAMPH 615

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F++F  V N+   +  G GLGLSI +  +  H G++ + S     T     +PS
Sbjct: 616 LFSKFYRVDNSDSRKIGGTGLGLSICKEIVRAHDGNIDVESILGEGTVFKVLLPS 670


>gi|329910769|ref|ZP_08275381.1| sensor histidine kinase [Oxalobacteraceae bacterium IMCC9480]
 gi|327546081|gb|EGF31149.1| sensor histidine kinase [Oxalobacteraceae bacterium IMCC9480]
          Length = 840

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 112/216 (51%), Gaps = 5/216 (2%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+  +S+ELR+PL+ I+G+  LLK +       ++   ++ I+ ++T    L+ D+
Sbjct: 447 IKDEFLATLSHELRTPLSAIMGWASLLKRAPPSPELYRKG--IDVIARNATEQAALIGDL 504

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQR 686
           LD+  + +G +++    + L+ +      ++A       I ++ V++       + D  R
Sbjct: 505 LDMNRILSGKLRMESELVHLDAVAAAAIDTLAPAALAKGIALELVLAPAGPVRVLGDGAR 564

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   +L+N + F++ G  V L     +   + +V +NG+ I       +F+RF  + 
Sbjct: 565 LQQVLWNLLANGVKFTASGGVVTLAIDERDDLVVATVTDNGNGIEAGFLPFLFDRFSQSD 624

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
               R   G+GLGLSIV++ + LHGG VS SS   G
Sbjct: 625 GSAARVHGGLGLGLSIVKNLLELHGGTVSASSGGAG 660


>gi|295838625|ref|ZP_06825558.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces
           sp. SPB74]
 gi|295827101|gb|EFG65239.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces
           sp. SPB74]
          Length = 573

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 123/241 (51%), Gaps = 12/241 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  AL  +   +   +E    FV  +S+ELR+PLT I   T++L+  ++ +L+      V
Sbjct: 290 AAAALERRVADMSAREESSRRFVADMSHELRTPLTAITAVTEVLE-EEIDTLDPMIEPAV 348

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             + + +  L  LV +++++   DAG  +L    +   D+ +++   +  +   + + + 
Sbjct: 349 RLVVSETRRLNTLVENLMEVTRFDAGTARLVCDDV---DIADQITACVDARAWLDAVEL- 404

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              D + G +   D +RL  I + ++ NA+     GS V +    +    +  V+++G  
Sbjct: 405 ---DAERGITARVDPRRLDVILANLIGNALKHG--GSPVRVSVRVEGPSLVIRVRDHGPG 459

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           IPED+   VF+RF  ++A R +  G GLGLSI ++  ++HGG ++ ++S +G      R+
Sbjct: 460 IPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAQANAHIHGGDITAANSPDGGAVFTLRL 519

Query: 789 P 789
           P
Sbjct: 520 P 520


>gi|239908881|ref|YP_002955623.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798748|dbj|BAH77737.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 745

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 126/257 (49%), Gaps = 11/257 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +++++T   R E AL    +A   A+  K+ F+ ++S+E+R+P+  + G   L++++   
Sbjct: 480 SWIDITQRKREEEALRHAIQAAEAANRAKSIFLDNMSHEIRTPINGVNGMLHLMQST--- 536

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q  Y+E    + T L  L+  ILD  T++A   +L      +  LLN+VK +   
Sbjct: 537 DLDDEQRLYIENAKFACTRLSKLLTAILDYTTLEANGPQLENRLFSVVGLLNKVKDAHVA 596

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNG 717
              +  ++  V  D  + +  + D  ++ +I   ++ NA+ F+ +G     +  A RD  
Sbjct: 597 MAIDKGLQFDVELDPAVPAHLIGDEGKVAKILGCLVENALKFTLEGFVQVTVFSAPRDTA 656

Query: 718 ---DFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHV 772
                +F++ ++G  + ED   S+F  F     ++  Q +G GLGL+         GG +
Sbjct: 657 KGRSVVFAIADSGIGMEEDCLDSIFEPFFQGETSYTRQFQGAGLGLAFACRLARAMGGEI 716

Query: 773 SISSSDEGVTTINCRIP 789
           ++ S  E  TT+   +P
Sbjct: 717 AVESRPEQGTTMWLLLP 733


>gi|239628811|ref|ZP_04671842.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239518957|gb|EEQ58823.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 984

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 129/268 (48%), Gaps = 17/268 (6%)

Query: 539 MLTFVNVTDSV---RAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNII 588
           ++ F+++TD     + +  L E+ E L       + A+  K+ F+  +S+++R+P+  I 
Sbjct: 441 LVVFIDITDITELRKLQHQLEERTEMLNTALEAAKLANAAKSEFLSRMSHDIRTPMNVIA 500

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T++           K    +  I  SS  LL L+ND+LD++ +++G + ++ + + L 
Sbjct: 501 GMTEIADAHLQDPERVKDC--LHKIRLSSHHLLGLINDVLDMSQIESGKVSIHMAPLSLP 558

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           DL+ E+       +     + KV + + +   F +D  RL QI   +LSNA  F+ +   
Sbjct: 559 DLVREIIMITLPNVRAKRQKFKVHLMNVRQEHFYSDELRLRQILLNLLSNASKFTPENGQ 618

Query: 708 VILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVES 763
           ++ +  +  +N    F+V + G  I ED  + +F  F    ++   +  G GLGL+IV+ 
Sbjct: 619 IVFEVEQLENNAALSFTVSDTGPGIKEDFQEHIFETFARERDSRTDRIEGSGLGLAIVKR 678

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
              L  G + + S     TT    +P +
Sbjct: 679 LTELMDGDIILGSLPGQGTTFRVTLPMQ 706


>gi|218262691|ref|ZP_03477049.1| hypothetical protein PRABACTJOHN_02728 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223242|gb|EEC95892.1| hypothetical protein PRABACTJOHN_02728 [Parabacteroides johnsonii
           DSM 18315]
          Length = 925

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E N  + K+   K  F  ++++E+++PLT I+G   L K SK     S  +  +  I 
Sbjct: 402 LAEANRYIEKSTAQKLQFFTNITHEIKTPLTLILG--PLGKLSKEAPEGSSLADDIRIIR 459

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  L  +V+ +LD   V++  M +    + L   + EVK    T      I      D
Sbjct: 460 KNAERLKRVVDQLLDFRKVESNKMNMRVGEVDLVAFVAEVKSCFDTMAAAKQIHFTFEHD 519

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
               S   DR ++ +I + +LSNA  F+  G T+ ++  +D GD +  SV++NG  IP +
Sbjct: 520 CPSVSIWVDRDKMEKILANLLSNAFKFTLDGGTITVRL-KDKGDQVELSVEDNGKGIPLE 578

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SVF+RF +   +    G G+GL +   F+++H G + + S
Sbjct: 579 NIASVFDRFFT-GDQNYVTGTGIGLHLTREFVHMHKGTIRVES 620


>gi|163747505|ref|ZP_02154855.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161379183|gb|EDQ03602.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 491

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A ++K  FV  +S+ELR+P+T+I G  D+     LG +  +  + ++    +S  L +++
Sbjct: 225 AFKVKTEFVSTISHELRTPMTSIKGSLDMACAGVLGDMTPQMEKVLKIAQRNSARLTSII 284

Query: 625 NDILDLATVDAG-----IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           N+ILDL   +AG     I  L   TI+ + +  E+ Q+ A+ +    + ++         
Sbjct: 285 NEILDLQKFEAGKVSFDIEPLEVQTIIEDAI--ELNQAFASNL---GVTLRYAKPSDAAG 339

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D +RL Q+ S +LSNA  FS  GSTV + + + +     SV + G  + E   + VF
Sbjct: 340 IATDEKRLQQVMSNLLSNAAKFSPAGSTVKVTSVKQDEKVRISVIDEGIGLAESEREKVF 399

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + F       QR   G GLG++I +  I   GG +    ++   TT    +P
Sbjct: 400 DEFSQIDSSDQRAVGGTGLGMNISKRIIEALGGQIDYFKNEGPGTTFYIDMP 451


>gi|129306911|gb|ABO30418.1| GacS [Pseudomonas sp. Q2-87]
          Length = 204

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSSQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|152988773|ref|YP_001347467.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
 gi|150963931|gb|ABR85956.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
          Length = 691

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 126/248 (50%), Gaps = 16/248 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLK 595
           M  ++++T+  R  R L    EA+R+ADE    K+ F+  +S+E+R+P+  +IG  +L+ 
Sbjct: 168 MNGWIDITERERLARQL---REAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL 224

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    + S  V Y +A S  L  L+ DILD+A +++G + L    + L +++  V+
Sbjct: 225 QRLTPGQPERASLEVAYEAAGSLQL--LIGDILDVAKIESGHLILTPERVRLREVVESVR 282

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       +  +R+ V + D      + D  R  Q+ S ++SNA+ F+ +G   I    +
Sbjct: 283 RMFEGLARQKGLRLGVELGDTPGCDVLIDPLRFKQVLSNLVSNAIKFTEQGQVTIRLQEK 342

Query: 715 --DNGDFI--FSVKNNGSSI-PEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
             D G  +   +V++ G  I P D  + +F  F+  A  R  + G GLGL+I    ++L 
Sbjct: 343 NLDEGRAVVRLAVEDTGIGIAPADQAR-LFQPFIQVAKGRTVQGGTGLGLAICRKLVDLM 401

Query: 769 GGHVSISS 776
           GG + + S
Sbjct: 402 GGDIEMHS 409


>gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1666

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 13/248 (5%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
            +VTD+  A  AL +  +    A + K+ F+ ++S+E+R+P+  IIG + L LKT     L
Sbjct: 929  DVTDARAAAEALAKARDVAEDAAKTKSDFLANMSHEIRTPMNAIIGMSHLALKTE----L 984

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            N +Q  YV+ I  S   LL ++NDILD + ++AG +++  + + L+ +L  V   I+ K 
Sbjct: 985  NPRQRDYVKKIQQSGQHLLGIINDILDFSKIEAGKLEVEVTEVHLDKVLENVGNLISDKA 1044

Query: 663  HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
                + +   +  G     + D  RL Q+     +NA+ F+ +G  V+ ++   D G  +
Sbjct: 1045 SAKGLELLFDLGAGVPLDLMGDSLRLGQVLINYANNAVKFTEEGEIVVAVRLLEDLGAEV 1104

Query: 721  ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F V++ G  + E+    +F  F        R+  G GLGL+I +    L GG V + 
Sbjct: 1105 MLRFEVRDTGIGLTEEQKARLFQSFQQADTSTTRKFGGTGLGLAISKKLAELMGGEVGVD 1164

Query: 776  S-SDEGVT 782
            S   EG T
Sbjct: 1165 SVPGEGST 1172


>gi|237727250|ref|ZP_04557731.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229434106|gb|EEO44183.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 669

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 11/227 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  E  L  K +A  +++ +K +F+ ++S+E+R+PL  I+GF+ +L +    S  ++++Q
Sbjct: 427 VSGEELLVAKEKA-EESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDD--SSPAEKAQ 483

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL+L+NDILD++ +++G +K  +      D++   + +++T  +     
Sbjct: 484 YCDIIQKNSDLLLHLINDILDISRMESGKIKFVWEEC---DVVELCQTALSTAEYGRKTS 540

Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
              + +  + S V   D QRL Q+   +LSNA  F+  GS  +  A  + +     SV +
Sbjct: 541 ALFLFETPVASLVIKTDAQRLKQVLINLLSNAAKFTPSGSIKLAIAIDKQHQQLELSVSD 600

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G  IP D    VF RF       Q  G GLGL+I    +   GG +
Sbjct: 601 TGCGIPSDKSDRVFERFEKLNEYSQ--GTGLGLAISRLIVENLGGKI 645


>gi|167749659|ref|ZP_02421786.1| hypothetical protein EUBSIR_00617 [Eubacterium siraeum DSM 15702]
 gi|167657412|gb|EDS01542.1| hypothetical protein EUBSIR_00617 [Eubacterium siraeum DSM 15702]
          Length = 967

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 116/225 (51%), Gaps = 10/225 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           NEA +KA+  K+SF+  +S+++R+PL+ IIGF  L    +  S  +K  +Y+  I  S  
Sbjct: 453 NEA-KKANNAKSSFISGISHDIRTPLSAIIGFASLAANEEGNSEATK--EYINKIITSGN 509

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L++DILD++ +++G +  N + + L+ +  E++  I++   E    + +       
Sbjct: 510 QLLGLISDILDISVIESGRLTFNITNVDLSRMFYEIRTVISSIAAEKQHNLTISMHNVTH 569

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNG-----DFIFSVKNNGSSIP 731
             V  D+ R  Q+    LSNA+ F+  G  + L     D+G     ++   V++NG  + 
Sbjct: 570 EIVRCDKHRFEQLIMNFLSNAIKFTHNGGNISLTLTETDDGKKGVPEYEIRVRDNGIGMS 629

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           E+  K +F  +          G GLG+ I +  ++  GG +++++
Sbjct: 630 EEFTKKIFEPYEREMTDKNIGGTGLGMPISKRIVDAAGGSITVNT 674


>gi|54302830|ref|YP_132823.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9]
 gi|46916254|emb|CAG23023.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9]
          Length = 578

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 11/229 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   KA+  K+SF+ ++S+E+R+PL  IIG + +L  ++   LN  Q++Y++ I  SS  
Sbjct: 52  EEAEKANAAKSSFLANMSHEIRTPLNGIIGMSGILSDTE---LNPSQAEYLQTIETSSQT 108

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LL L+NDILDL+ +++G + L+     L +++ +    +  K  E  + +++  D +L  
Sbjct: 109 LLLLINDILDLSKIESGNLVLSPHESNLAEVVYDTITIVQAKASEQGLNLQIQLDPELPT 168

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
           S + D  RL Q+   ++SNA+ F+ +GS  +     D GD     +FS+K+ G  I +D 
Sbjct: 169 SVMLDEHRLRQVLMNLMSNAVKFTLQGSVTLSITYTDIGDKKASLLFSIKDTGIGIEKDK 228

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + VF  F        R+  G GLGL+I    + L GG + +  S++GV
Sbjct: 229 QQQVFAPFTQEDGSITRQFGGTGLGLAICRQLVELLGGSIEL-KSEKGV 276


>gi|327405721|ref|YP_004346559.1| integral membrane sensor hybrid histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327321229|gb|AEA45721.1| integral membrane sensor hybrid histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 1052

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 28/274 (10%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN----EALRKADEIKNSFVQHVSYE 579
           +++ ++++ L  A  +  F   +  + AER   E      E +++ ++ K+ F+ ++S+E
Sbjct: 486 AIVGFTLMTLLVASLLYLFRLRSKKLAAERLNVELKRREIETVKETEKFKSRFLANISHE 545

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY--ISASSTILLNLVNDILDLATVDAGI 637
            R+PLT I G  +LLK       N+ +   V Y  +  +   LL L+N +LDL+ +++G 
Sbjct: 546 FRTPLTFINGHLELLKQ------NASKEDVVRYNEMENNGKRLLQLINHLLDLSKMESGQ 599

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDG-----KLGSFVADRQRL 687
            +L +      +LLNE+ Q+     H + +R+ +     IS+          F    + L
Sbjct: 600 YELQFQN---GNLLNEI-QAHVQAFHSHALRLGIELTIEISESAKQQLNQKPFYYSSEAL 655

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             I   +LSNA+ F+    T+           + SV + G  IP++    VF+RF     
Sbjct: 656 TTILVNLLSNALKFTPSSGTIYTSIDISENHLLISVADTGIGIPDNQLDKVFDRFYQVDS 715

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
             QR   G G+GL+IV+    +HGG VS+ ++ E
Sbjct: 716 VNQRFQSGSGIGLAIVKELAIMHGGEVSVKNAPE 749


>gi|312881159|ref|ZP_07740957.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309371051|gb|EFP98505.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 731

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+    + + + K++F+  +S+E+R+P+  ++G   +L+ +++     +Q +Y++ + 
Sbjct: 339 LEEEKVKAQASTKAKSAFLAVLSHEIRTPMNGVLGTAQILQKTEM---TDEQRKYLKTLI 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + V+ G ++L +    L  +L  +     T   E  ++ KV SD
Sbjct: 396 DSGEHMMTLLNEILDFSKVEQGHLELEHKPFPLESVLGSINSVYNTLCCEKGLQFKVYSD 455

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI-FSVKNNGSSI 730
             +   +  D+ RL QI   +L+NA+ F+S+G   +   +   D+  ++   V++ G  I
Sbjct: 456 VPIERWYRFDKARLRQILFNLLNNAVKFTSRGYVEVSFTEEIIDDQTYLRLRVRDTGIGI 515

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           P++  + VF  F        RR  G GLGL+IV     L GG + ++S
Sbjct: 516 PKEAREKVFKPFEQAESSTTRRFGGTGLGLAIVNQLCELMGGKIQLTS 563


>gi|300786407|ref|YP_003766698.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299795921|gb|ADJ46296.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1516

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 15/248 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y
Sbjct: 942  QARQELEARAQQLTLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTAKQVEY 1001

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M +    + L  L++ V+ +      + N+  
Sbjct: 1002 AGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPEQVSLRQLIDYVEATFRPMTSQRNLDF 1061

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----------TVILKAARDNGD 718
            ++ ++ G     + D  RL Q+   +LSNA+ F+  G             + +  R +G 
Sbjct: 1062 RITVAPGSPIELLTDDSRLRQVLRNLLSNAVKFTEVGGIELHIEPVDPERLPRPLRVHGP 1121

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + F V + G  I E   +S+F  F        R+  G GLGLSI      L GG ++  
Sbjct: 1122 AVAFRVTDTGIGIAEHQLESIFGAFQQADGTTSRKYGGTGLGLSISREIAQLLGGVITAQ 1181

Query: 776  SS-DEGVT 782
            S+  EG T
Sbjct: 1182 STLGEGST 1189


>gi|284988897|ref|YP_003407451.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM
           43160]
 gi|284062142|gb|ADB73080.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM
           43160]
          Length = 957

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 11/232 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L    +   +A + K +F+  +S+E+R+PL  ++G TD+L  + L     +Q  ++E
Sbjct: 295 ERDLVAARDEAERAGQAKTAFLATMSHEIRTPLNAVLGLTDVLLATDL---TDEQRGHLE 351

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRI 669
            ++ S   LL+L+NDILD + ++AG + L  +   L  ++ +V Q +A        ++ +
Sbjct: 352 TVAGSGDSLLSLINDILDFSKIEAGELDLEAAPFDLVGVVYDVAQLLAPTASGAGLDLLV 411

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFIFSVKNN 726
            V  DG     V D  R  Q+ + ++ NA+ F+S+G  V+     AA        SV + 
Sbjct: 412 DVAGDGPW-QVVGDGSRFRQVVTNLVGNAVKFTSEGHVVLRLTGTAAEGRLQCRLSVVDT 470

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  I  D    +F  F  V  +      G GLGL+I +      GG + + S
Sbjct: 471 GIGISPDQRHRLFRSFSQVDASVTRSYGGTGLGLAISQRIARAMGGDIQVHS 522


>gi|213584048|ref|ZP_03365874.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 396

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 9/222 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  VS+ELR+PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD +
Sbjct: 3   FLATVSHELRTPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFS 59

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
            +++  +K+        +++N +  +    +    + +    +  +  S   D  RL Q+
Sbjct: 60  KIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQV 119

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            S +LSNA+ F+  G  V+    R +GD++   V++ G  IP      +F+ F       
Sbjct: 120 ISNLLSNAIKFTDIGCIVL--HVRCDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGV 177

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           QR  +G GLGL+I E  I++  G +S+ S     +    RIP
Sbjct: 178 QRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 219


>gi|209515313|ref|ZP_03264180.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209504294|gb|EEA04283.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 721

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 124/258 (48%), Gaps = 10/258 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + +F ++T     ER L E   A   A++ K++F+  +S+E+R+PL  I+G  +LL  S 
Sbjct: 206 LCSFSDITTLKNTERKLDEARAAADAANQAKSAFLAMMSHEIRTPLNAILGNLELLGRSP 265

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L  L   Q + +  +++SST LL ++NDILD + V++G M L   +  L  ++ +V    
Sbjct: 266 LSPL---QEERLGVVTSSSTALLGIINDILDFSKVESGQMTLESISFDLGHVIRQVGAMF 322

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
               H   +    + D  L   ++ D  R+ QI   ++SNA+ F++ G  ++    +D  
Sbjct: 323 EPVAHAKGLEFDCVIDDALAPHYLGDPTRIRQIAVNLVSNAIKFTATGDVLLEVYLKDDT 382

Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             +   +  V + G  +     +++F+ F        RR  G GLGL++      L  G 
Sbjct: 383 AEDSPIVIGVSDTGIGMTLQQQETLFHAFTQADSSIARRYGGTGLGLALCLRLTELMHGT 442

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     +T    +P
Sbjct: 443 IQVKSELNAGSTFIVTLP 460


>gi|281418386|ref|ZP_06249406.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
 gi|281409788|gb|EFB40046.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
          Length = 363

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 142/299 (47%), Gaps = 19/299 (6%)

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C    N  D  ++    +TSF DE    +G          +Y + P  NA  +L+     
Sbjct: 72  CRLIKNTPDLKNIPVIFLTSFSDEESIRKG----FESGGQDYVVKPF-NASELLS----- 121

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+    L  + E+L++A++  +SF   V+++L+SPL ++    +LL +  L  L+S  
Sbjct: 122 -RVKTHLMLKCQAESLKEANKELDSFCYTVAHDLKSPLLSLNKLVELLVSDHLNQLDSAG 180

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  I   S+ +++ V+ +L+ + +    M++N+  I LN+L  EV   + +   + +
Sbjct: 181 KELVYNIREKSSEIIHTVDRLLEFSKMCE--MQVNFEIIDLNELFTEVCNELKSLEPQRD 238

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK 724
           IRI +     L     DR  +  + S ILSNA  ++    T I+  +++ D  +++F VK
Sbjct: 239 IRIHI---QPLPKVYGDRLLMRLLISNILSNAFKYTRNRQTAIIEIQSSEDGNEYVFFVK 295

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           +NG+         +F  F       +  G G+GL+I +  +  H G   ++   D+G T
Sbjct: 296 DNGAGFDMKYSSRLFGVFQRLHSEDEFEGSGVGLAICQRILKRHNGRAWMTGEIDKGAT 354


>gi|78185147|ref|YP_377582.1| periplasmic sensor signal transduction histidine kinase
           [Synechococcus sp. CC9902]
 gi|78169441|gb|ABB26538.1| periplasmic sensor signal transduction histidine kinase
           [Synechococcus sp. CC9902]
          Length = 478

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDI 627
           +  FV  VS+ELR+PLT + G+    +T K G +L+S+Q   ++     S  +  L++++
Sbjct: 257 QRQFVSAVSHELRTPLTIVQGYIH--RTIKRGDNLSSEQVHGLQTAKDESIRMQRLMDEL 314

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQ 685
           LDL+  D+G + ++   + L D L +V   +A    +  + + +  D +   G   AD  
Sbjct: 315 LDLSRGDSGQLAISCEPVRLADQLEQVA-DMARHTLQRPLVLHLPDDPQQRDGIAQADPA 373

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q+   ++ NA  +S +G  ++LK   D  +    V + G  IPED   +VF RF   
Sbjct: 374 RLRQVLLDLIENADKYSPEGRPILLKLQHDGNNSAIEVIDQGIGIPEDELDAVFERFQRG 433

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++   + G GLGLS+V+  +   GG + + S
Sbjct: 434 SNAPVKTGSGLGLSLVKLLVVGMGGSIEVRS 464


>gi|78048724|ref|YP_364899.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037154|emb|CAJ24899.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1191

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 21/241 (8%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQL 906

Query: 668  RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIF 721
              +   D  L   +  D  R+ QI   +L NA+ F+ +GS     T + +  R       
Sbjct: 907  AFQCELDEALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRLTTLPQYTRQG--LRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             V++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V+++
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGAVTVT 1021

Query: 776  S 776
            S
Sbjct: 1022 S 1022


>gi|298492280|ref|YP_003722457.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc
           azollae' 0708]
 gi|298234198|gb|ADI65334.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc
           azollae' 0708]
          Length = 533

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 130/255 (50%), Gaps = 8/255 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +LT +++T+    E  L +  E  +   E++   V  V ++ R+PL N+I F++ L    
Sbjct: 275 ILTAIDITNYKYVESELCQTLEKTKLLSELRAHLVAIVCHQFRTPL-NVISFSNSLLKRH 333

Query: 599 LGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   + ++   ++++I      +  +++DIL LA  ++  ++ ++   V++  L E  Q 
Sbjct: 334 IDKWDEEKILPFIKHIQIGVEQINQILDDILFLAKAES--VQFSFQPEVID--LVEFCQD 389

Query: 658 IATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +KM    +   I   S G       D++ +  I + +L NA+ +S  GS V L+    
Sbjct: 390 LISKMLIINSEYHINFDSRGNCEKVWIDKRLVEPIVNNLLENAIKYSPIGSVVELRVDCH 449

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            G+ IF VK+ G +IPE+    +F  F   ++  +  G GLGLSIV++ +NLHGG + + 
Sbjct: 450 EGEVIFHVKDQGIAIPEEDQNRLFEPFYRGSNIDKVPGHGLGLSIVKTLVNLHGGQMRVV 509

Query: 776 SSDEGVTTINCRIPS 790
           S     TT    +PS
Sbjct: 510 SKVGVGTTFTVVLPS 524


>gi|266624238|ref|ZP_06117173.1| PAS domain protein [Clostridium hathewayi DSM 13479]
 gi|288863916|gb|EFC96214.1| PAS domain protein [Clostridium hathewayi DSM 13479]
          Length = 739

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 139/256 (54%), Gaps = 21/256 (8%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-- 606
            ++++AL    E  R A+E K++F+  +S+++R+P+  IIG T +     +G ++ ++  
Sbjct: 336 AQSQKALFAAYEEARNANEAKSNFMAQMSHDIRTPMNAIIGMTAI----AMGQVDDRERV 391

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ IS SS+ LL+L+N++LD++ ++ G + L  +   L +L +E+   +  +  E  
Sbjct: 392 KDCLQKISLSSSHLLHLINEVLDMSKIERGQLTLTEAPFSLKNLFHEIGSIVYNESMEKE 451

Query: 667 IRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-------GD 718
             +  ++DG    + + D  ++ Q+   +++NA+ ++  G T+ + A+R+        G 
Sbjct: 452 QTLNFLTDGTTHDNLLGDAGKIRQVLINLINNAIKYTPHGGTITV-ASREMTSGIPGVGC 510

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F+F+V++NG  I  D    +F  F    N H  + +G GLG+SI    +    G++ + S
Sbjct: 511 FVFTVEDNGIGISRDFMDHIFVPFAREDNCHVRKVQGTGLGMSISYGIVRAMQGNIRVES 570

Query: 777 SD-EG---VTTINCRI 788
            + EG   + T+N RI
Sbjct: 571 REGEGSRFIVTLNIRI 586


>gi|238793685|ref|ZP_04637307.1| Aerobic respiration control sensor protein arcB [Yersinia
           intermedia ATCC 29909]
 gi|238726926|gb|EEQ18458.1| Aerobic respiration control sensor protein arcB [Yersinia
           intermedia ATCC 29909]
          Length = 778

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 121/235 (51%), Gaps = 16/235 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +S+Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DSEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKN 725
           K I + +L      + D  RL QI   ++ NA+ FS +G  V+ +  R+  D  IF V++
Sbjct: 379 KFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFSQQGKIVV-RVRREGSDRLIFEVED 437

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSS 777
           +G  IPED    +F  +     R   R   G G+GL++ +      GG +++ S+
Sbjct: 438 SGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492


>gi|159897248|ref|YP_001543495.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890287|gb|ABX03367.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 531

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+A++ ++SF+Q ++++LR+PL  ++G  D L T++L   +     +VE    +     
Sbjct: 303 LREAEDSRDSFIQMLTHDLRAPLAGMVGCFDALMTTQL---DDDGKLFVELGFRAGAAQQ 359

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+LD+   +AG + L+  T  L  L   + + +     E  +  ++    +    V
Sbjct: 360 RLIDDLLDVYKAEAGRLMLSKETTSLQRLGELLSEQVLGITVEQQLSFELDLPAE-PLVV 418

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS--VKNNGSSIPEDMCKSVF 739
            D  +++++ + ++SN + ++  G T+ +    D    + +  V + G  I  +    +F
Sbjct: 419 LDEHKMVRVLANLVSNGIKWTRPGGTIRVVGTIDQAQQLITLNVSDTGQGIAAEDIPHIF 478

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           ++F       Q RG GLGL+     +  HGG +S+ S     TT+  ++P KE
Sbjct: 479 DKFYQGRTTAQSRGTGLGLTFCNLAVGAHGGTISVDSQVGKGTTVTVQLPWKE 531


>gi|44885996|dbj|BAD11810.1| ethylene receptor [Diospyros kaki]
          Length = 633

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 40/272 (14%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           DS+RA   L E+N AL  A +        +N F+  +++E+R+P+  II  +        
Sbjct: 315 DSMRARDQLMEQNVALDNARQEAETAIRARNDFLAVMNHEMRTPMHAIISLS---TLLLE 371

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E I  SS +L  L+ND+LDL+ ++ G ++L+     L+++L +    I 
Sbjct: 372 TELTPEQRVMIETILKSSNLLATLINDVLDLSRLEDGSLELDTGIFNLHEVLKQAVGLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG------STVILKA 712
                  + + ++   +L  + V D +RL+Q    I  NA+ F+ +G      ST   ++
Sbjct: 432 PIASVKKLSMTLLLAPELPVYAVGDEKRLIQTILNIAGNAVKFTKEGYVSVVASTAKPES 491

Query: 713 ARD-----------NGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR-----G 753
            RD           +G F     VK++G  I P+D+   +F +F + +  G  R     G
Sbjct: 492 LRDWRPPEFYPMPSDGHFFLRVQVKDSGCGISPQDI-PQIFTKF-AQSQSGSNRNTSGAG 549

Query: 754 VGLGLSIVESFINLHGGHVSISSS--DEGVTT 783
           +GLGL I + FINL GGH+ I S   D+G T 
Sbjct: 550 LGLGLPICKRFINLMGGHIWIESEGLDKGTTV 581


>gi|84498452|ref|ZP_00997222.1| putative two-component system sensor kinase [Janibacter sp.
           HTCC2649]
 gi|84381195|gb|EAP97079.1| putative two-component system sensor kinase [Janibacter sp.
           HTCC2649]
          Length = 394

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 11/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEY 612
           L E +   R+ +E++  FV +VS+EL++P    +G   LL  + L + +  +  S++   
Sbjct: 137 LAEDHTHARRVEEVRRDFVANVSHELKTP----VGGIALLAEAVLDARDDPEAVSRFAAR 192

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   ST L  LV +I+DL+ +           + +  ++ E    +        I ++ +
Sbjct: 193 IQVESTRLTRLVKEIVDLSRLQVADTLHEPELVQIPQVVAEAVDRVRVAAEARQITLEAV 252

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731
           +D +   F  D + L    + ++SNA+++S +G+ V + AAR  GD I  +V + G  IP
Sbjct: 253 ADERASVF-GDTELLATAVANLVSNAVNYSEQGTRVAV-AARRVGDTIEITVSDQGQGIP 310

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F RF  V  A      G GLGL+IV+     HGG VS+ S +   +T   R+P
Sbjct: 311 ATEQSRIFERFYRVDAARSRATGGTGLGLAIVKHVCATHGGDVSVWSEEGHGSTFTMRLP 370


>gi|325927602|ref|ZP_08188832.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
 gi|325542036|gb|EGD13548.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
          Length = 1191

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 21/241 (8%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQL 906

Query: 668  RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIF 721
              +   D  L   +  D  R+ QI   +L NA+ F+ +GS     T + +  R       
Sbjct: 907  AFQCELDEALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRLTTLPQYTRQG--LRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             V++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V+++
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGAVTVT 1021

Query: 776  S 776
            S
Sbjct: 1022 S 1022


>gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
 gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
          Length = 2241

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 20/270 (7%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNII 588
            AQ  ++  N       E  +TE+   L        KA++ K++F+ ++S+E+R+P+  +I
Sbjct: 1455 AQAAVSLSNAYLYSTLENRITERTRELNQARLTAIKANQSKSNFLANMSHEIRTPMNGVI 1514

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            G + LL  +   +L++KQ  Y +    S+  LL ++NDILD + ++ G M L  +   L 
Sbjct: 1515 GLSQLLLKT---NLDNKQKNYAKKTLESANSLLTIINDILDFSKIEVGKMTLEEAPFNLE 1571

Query: 649  DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             L+  V      + H  ++ + V IS     + + D  RL QI   + SNA+ F+  G  
Sbjct: 1572 QLVKRVTTICELRAHTKDLELIVDISPNIPFNLIGDALRLEQILLNLTSNAVKFTKSGHV 1631

Query: 708  VILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
            +I   + +  +           V++ G  I E  C  +F  F        R   G GLGL
Sbjct: 1632 IIRVQSLNEVEIDDMHVQLNIEVEDTGIGISEQQCALLFESFTQANDSITREFGGTGLGL 1691

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +I +  + L  G + + S     +T + +I
Sbjct: 1692 AICKQLVELMQGQIQVRSQPNIGSTFSLKI 1721


>gi|312128529|ref|YP_003993403.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778548|gb|ADQ08034.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 450

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 10/225 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + +T   + L K ++++  F+ + ++ELR+PL+ I  + + +    L     K+  Y   
Sbjct: 221 KTITYMAQNLSKTEKLRRDFIANTTHELRTPLSIIKSYAEAIYDDILNKDQIKEYSYSIM 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I A    L NL+N+IL+L+ + +G ++LN   I L  L NE+   +   + + N +  + 
Sbjct: 281 IEADH--LNNLINEILELSKLQSGTIQLNIQPINLKSLFNEIISEV--NIIKGNRKFWLF 336

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  +    AD + L + FS I+ NA++ ++    V +KA ++N     S+K++G  I E
Sbjct: 337 EDDIVTK--ADSKLLKRAFSNIIINAVNHTNDTGNVYIKAEKENDYIKVSIKDDGEGIDE 394

Query: 733 DMCKSVFNRFVSNAHRGQRRGV-GLGLSIVESFINLHGGHVSISS 776
                +FNRF S   +  ++G+ GLGLSI +  + +H G +++SS
Sbjct: 395 ADLPYIFNRFYS---KSAKKGIGGLGLSIAKEIVQMHSGKINVSS 436


>gi|303327881|ref|ZP_07358321.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862242|gb|EFL85176.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 976

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 16/241 (6%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNS 604
           +D   AE+      E   +A   K+ F+  +S+E+R+P+  I+G T L L+T+      +
Sbjct: 300 SDLREAEKNALAAKEQAEEASRAKSDFLARMSHEIRTPMNAILGITYLCLQTTH----EN 355

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ  Y+  I ++   LL ++NDILD++ ++AG M L      L +L+  +       +  
Sbjct: 356 KQLYYLRKILSAGRGLLGIINDILDVSKIEAGKMTLQNEAFALQELVENLSDLCGALVGG 415

Query: 665 NNIRIKVISDGKLGSFV---ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
            NI +    D  +  FV    D  RL Q+ + +L NA+ F+ KG  V+    L    D  
Sbjct: 416 KNIEVLFHVDPNV--FVTVEGDLLRLTQVLTNLLGNAVKFTEKGRVVLRIEELGRGADTI 473

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               SV + G  + E+    +F  F        RR  G GLGL I + F+ + GG + + 
Sbjct: 474 TLGISVSDTGIGLTEEELARLFKPFEQADGSITRRYGGTGLGLVICQRFVRMMGGELEVR 533

Query: 776 S 776
           S
Sbjct: 534 S 534


>gi|295695239|ref|YP_003588477.1| Osmosensitive K channel His kinase sensor [Bacillus tusciae DSM
           2912]
 gi|295410841|gb|ADG05333.1| Osmosensitive K channel His kinase sensor [Bacillus tusciae DSM
           2912]
          Length = 905

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 121/232 (52%), Gaps = 5/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEYISASST 618
           E   +++ ++ + +  ++++LR+PL ++IG  T LL+  ++     ++ + +  I   + 
Sbjct: 666 EVAAESERLRTALLNSITHDLRTPLASVIGSVTSLLEGDEIFDPKDRR-ELLMTIYQGAL 724

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  L+ ++LD+A +++G+M+L+     L D++          +H   + + +  +  + 
Sbjct: 725 RMNRLIANLLDMARIESGMMQLHKKWCDLEDVVGVALAQSEEWLHNREVHLNIPRE--MP 782

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             +AD   L ++ + +L NA+ FS  GS + + A  ++G    SV N G+ IPE+  + V
Sbjct: 783 MVLADDVLLERVMANLLGNAVKFSPPGSPIEVAAEVEDGAVEVSVTNRGAPIPEEELEKV 842

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F +F        + G GLGL+I ++ +  HGG +   +   GV  +  R+P+
Sbjct: 843 FEKFYRAPGAHVQPGTGLGLAISKAIVEAHGGSIWAENIPGGV-RVAFRLPA 893


>gi|212694778|ref|ZP_03302906.1| hypothetical protein BACDOR_04312 [Bacteroides dorei DSM 17855]
 gi|212662632|gb|EEB23206.1| hypothetical protein BACDOR_04312 [Bacteroides dorei DSM 17855]
          Length = 669

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 11/227 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  E  L  K +A  +++ +K +F+ ++S+E+R+PL  I+GF+ +L +    S  ++++Q
Sbjct: 427 VSGEELLVAKEKA-EESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDD--SSPAEKAQ 483

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL+L+NDILD++ +++G +K  +      D++   + +++T  +     
Sbjct: 484 YCDIIQKNSDLLLHLINDILDISRMESGKIKFVWEEC---DVVELCQTALSTAEYGRKTS 540

Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
              + +  + S V   D QRL Q+   +LSNA  F+  GS  +  A  + +     SV +
Sbjct: 541 ALFLFETPVASLVIKTDAQRLKQVLINLLSNAAKFTPSGSIKLAIAIDKQHQQLELSVSD 600

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G  IP D    VF RF       Q  G GLGL+I    +   GG +
Sbjct: 601 TGCGIPSDKSDRVFERFEKLNEYSQ--GTGLGLAISRLIVENLGGKI 645


>gi|189426004|ref|YP_001953181.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422263|gb|ACD96661.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1127

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 27/249 (10%)

Query: 551 AERA--LTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           AER   LT  NE L +A +        K+ F+ ++S+E+R+P+  I+G   L L+T    
Sbjct: 503 AERTSELTRLNEELARARDTAEGASRSKSEFLANMSHEIRTPMNAILGLVHLALQT---- 558

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ KQ +Y++ +S S+  LL ++NDILD++ ++AG +++  +   L  ++      ++ 
Sbjct: 559 DLSHKQREYLDTVSNSAQSLLGIINDILDVSKIEAGRLQIEKTNFSLEGVVTRTLALLSI 618

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----- 714
           K  E  I ++   D  +  + V D  RL Q+   +L NA+ F+  G TV L+  R     
Sbjct: 619 KAREKGINLEQQVDTSIPDALVGDPLRLEQVLVNLLGNAVKFTDSG-TVTLQIRRGTEPR 677

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
               D      S+ + G+ + E     +F  F        R   G GLGL+I    + + 
Sbjct: 678 DSDSDEITLEISITDTGAGMDEQTLGRLFKPFSQGDTSTTRTHGGTGLGLTICRHLVEMM 737

Query: 769 GGHVSISSS 777
           GG ++++SS
Sbjct: 738 GGTITVTSS 746


>gi|146297551|ref|YP_001181322.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411127|gb|ABP68131.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 16/235 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLN 622
           K D ++  FV +VS+ELR+P+T I  +++ L    L   N + + Q++  I      +  
Sbjct: 338 KLDSMRKQFVANVSHELRTPITTIKTYSETL----LDVDNEETKKQFLSVIIKECDRMTR 393

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+L L+ +D+G   LN   + L++L+  V + +     + N   + +S   L   VA
Sbjct: 394 LVSDLLYLSRLDSGENILNLEEVNLSELVRFVCEKLKIHAKKKN---QTLSCSILQDIVA 450

Query: 683 --DRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             DR ++ Q+   ++SNA+ +  +G    V+L+   D    I  VK+NG  IPE+    +
Sbjct: 451 MVDRDKIEQVLINLISNAVTYVQEGGQINVVLQKEEDKIKII--VKDNGPGIPEEDLPRI 508

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF  V  A   +  G GLGLSI +  +  HGG + + S     TT    +P+K
Sbjct: 509 FERFYRVDKARSRELGGSGLGLSIADEIVKAHGGKILVESKVGSGTTFTVVLPAK 563


>gi|330872980|gb|EGH07129.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 584

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  ++++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPETREADLLNTVTEEMQHLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E +     K  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 QNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISS 776
            + LHGG + + S
Sbjct: 569 IVQLHGGRMGVYS 581


>gi|325845471|ref|ZP_08168762.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|325488490|gb|EGC90908.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 426

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV   S+EL++PLT I   TD++  ++  ++N +Q +++++I + +  +  LV+D+L
Sbjct: 197 QQQFVADASHELKTPLTVIHTTTDVILANQHQTIN-EQRKWIDHIKSETERMSKLVSDLL 255

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA +D+  + L  ++  L++ +      + +   E+   + +  +  L  F  + +R+ 
Sbjct: 256 YLAKIDSNEVLLKSASFDLSEAIINAALPLESVFFESGKELVLDIEPDL-MFTGEEERIA 314

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   +L NA+  S   + ++L   +++  FI +VKN G  IP +    +F RF      
Sbjct: 315 QVAIILLDNALKHSPTQTQIMLSLKKEHEQFILAVKNKGVGIPPEHLDKIFERFYRADES 374

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             R   G GLGLSI ++ ++ H G +S+ S     TT     P+K
Sbjct: 375 RARDTGGYGLGLSIAKTIVSQHHGQISVKSIPNDETTFTVIFPTK 419


>gi|298241549|ref|ZP_06965356.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554603|gb|EFH88467.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 978

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ D+ K++F+   S+ELR+PLT +   T LL            +  +  +     
Sbjct: 744 NSARKELDQRKDAFISMASHELRNPLTALKLQTSLLHRQLARQGIPASAPALSSMETQIN 803

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  LV + LD++   AG ++     + L++LL E    I   M + +   +++  G + 
Sbjct: 804 TVTRLVEEWLDVSKFQAGRLEYVRERVNLDELLRE----IVDTMQQTHPSHRILLRGAVQ 859

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            S +ADR RL Q+F+ +LSNA+ +S    TV +  +         V ++G  IP +    
Sbjct: 860 TSLMADRDRLGQVFTNLLSNAIKYSPGAETVEMDLSTSEETVTVRVCDHGLGIPREQRDK 919

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RF   +   Q+   G+G+GL IV   +  H G +++ S+    +T    +P K
Sbjct: 920 IFERFYRASGPRQKAIPGLGMGLYIVAEIVKRHRGTITVDSTVGKGSTFTVTLPKK 975


>gi|251780945|ref|ZP_04823865.1| two-component sensor kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085260|gb|EES51150.1| two-component sensor kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 722

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 12/235 (5%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQS--QYVEYISASSTILLNL 623
           +K +F  +VS+E R+PL  I+    L+  K S       K+   QY+  I  +S  LL L
Sbjct: 459 LKTTFFANVSHEFRTPLNIILTAIQLISIKLSNCPCSEDKEKIFQYIRGIKQNSYRLLKL 518

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-- 681
           VN++LDL  +D G  +L      + +L+ E+  S+A   H  + + ++I D      +  
Sbjct: 519 VNNLLDLTKIDGGYYELKSIKCNIVNLIEEIVLSVAD--HIGSKKREIIFDTTEEEILTS 576

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVF 739
            D +++  I   +LSNA+ F+ +  ++ +    D+   + + SV+N+GS I ++  K +F
Sbjct: 577 CDPEKIETILLNLLSNAVKFTKENDSIEVNLNVDSYYKNVVISVRNSGSKIDKEDAKIIF 636

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           NRF    +   RR  G G+GL++V+S ++LHGG + +++  E    I   IP KE
Sbjct: 637 NRFTQLDNLLNRRCEGSGIGLALVKSLVDLHGGDIWVNTLFEDGAEIIFTIPIKE 691


>gi|187778877|ref|ZP_02995350.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
 gi|187772502|gb|EDU36304.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
          Length = 569

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF++ LK  +       + ++++ I+  +  L 
Sbjct: 340 IKKLENMREQFVANVSHELKTPLTSIKGFSETLKYVE---DKKNREKFLQIINDEADRLT 396

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDIL L+ ++    +L    I LN+L+ +V   +     + NI+I ++  GK+   +
Sbjct: 397 RLINDILVLSNIEKQKQELIKEEIDLNELIEKVYCLVKKSAEDKNIKINIVG-GKVPLLI 455

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            ++ +  Q+   ++ NA+ ++     V +   +D  + IF V++ G  I ++    +F R
Sbjct: 456 GNKDKYNQMIINLIDNAIKYTEPNGEVNIGTRQDKDNIIFWVEDTGVGISKEHLDRIFER 515

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGL+IV+  +    G + + S  +  T    +IP
Sbjct: 516 FYRVDKARSRAEGGTGLGLAIVKHIVLGINGKIEVKSEPKKGTKFIVKIP 565


>gi|162418891|ref|YP_001605672.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Angola]
 gi|162351706|gb|ABX85654.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis Angola]
          Length = 778

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 126/250 (50%), Gaps = 18/250 (7%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +++Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DAEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++ +   +     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQFDNQPVDFTGFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           K I + +L      +AD  RL QI   ++ NA+ F+ +G  V+      N   IF V+++
Sbjct: 379 KFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLIFEVEDS 438

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT- 782
           G  IPED    +F  +     R   R   G G+GL++ +      GG +++ S+ +GV  
Sbjct: 439 GMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST-QGVGS 497

Query: 783 --TINCRIPS 790
             T+  + P+
Sbjct: 498 CFTLTIKAPA 507


>gi|95928312|ref|ZP_01311060.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135583|gb|EAT17234.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1001

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 14/239 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT-NIIGFTDLLKTSKLGSLNSKQ 606
           S+ A R  TE+ EA  +A   K+ F+  VS+E+R+P+T  I     +L++S    L+ +Q
Sbjct: 607 SILAMRQATEEAEAANRA---KSEFLAVVSHEIRTPMTVTIAALQQVLESS----LDDEQ 659

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            QY+   + +S  LL+L+NDILD + ++A  + L  S   L + +  V   +     +  
Sbjct: 660 RQYLTMANDASDSLLSLINDILDFSKIEAEKLVLEESPFNLRECIENVVAILGVNARQKG 719

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF---S 722
           +R+++ S+  L    + D+ R+ QI   ++SNA+ F+ +G   +   A    D      +
Sbjct: 720 LRLELASNASLPDLLLGDQHRVRQILVNLVSNAIKFTEQGQVSVKVDAEQQDDHHLVHVA 779

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           V + G  I + + + VF  F        R+  G GLGL+I +  +   GG + + S  +
Sbjct: 780 VCDTGIGIDDSLRERVFESFSQADSSTTRKYGGTGLGLAICKGLVEQMGGVIGVESCQD 838


>gi|300867975|ref|ZP_07112614.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300333996|emb|CBN57792.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 574

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 122/262 (46%), Gaps = 26/262 (9%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E   A   A+  K++F+ ++S+ELR+PL  II ++++L+              +E I 
Sbjct: 311 LQEAKIAAEAANRSKSAFLANMSHELRTPLNAIINYSEMLQEDAQDEGYEDFLPDLERIQ 370

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL++++DILD++ ++AG + L      + +++ EV  +    + +    + +  +
Sbjct: 371 TAGKHLLDMISDILDISKIEAGHVTLYLENFDIANMIEEVVTTAQPLVEKKGNTLAMQIN 430

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------- 718
           G +G+  AD+ ++ QI   +LSNA  F+ KG  + L   R   D                
Sbjct: 431 GDVGTMYADQPKVRQILLNLLSNAAKFTEKG-VITLSIERIKNDKFKSKNKKYKQEYPPA 489

Query: 719 -------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                   IF V + G  + E+  + +F  F        R+  G GLGL+I +    + G
Sbjct: 490 LNSNSQVLIFRVSDTGIGMTEEQLQHIFKPFTQADASTTRKYGGTGLGLTISQRLCQILG 549

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +++ S  E  +T   R+P +
Sbjct: 550 GEIAVESEVERGSTFTVRLPER 571


>gi|294054185|ref|YP_003547843.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613518|gb|ADE53673.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 1191

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 120/248 (48%), Gaps = 12/248 (4%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R    L    E    A+ IK+ F  ++S+E+R+P+ +I+GF D+L+     ++N     Y
Sbjct: 815  RQSEELVIAKEHAESANRIKSEFTANISHEIRTPMNSIMGFADILRDE---TVNPTHQHY 871

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++ +  S   LL++++D+LD++ ++A  + L+     L+    +  +    K+ E  + +
Sbjct: 872  LDAVLKSGDTLLHMIDDLLDMSKLEADKLSLHPRPTNLSSETRDTLRMFQPKLSEKALDL 931

Query: 670  KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD---NGDFIFSVK 724
            + +SD  +  S + D  R  Q+   I+ NA+ F+  G   I L+  R    +     ++ 
Sbjct: 932  EFLSDPNIPSSLLIDATRYRQVLLNIVGNAIKFTDSGKISIRLELVRQYALHAHVRCAIS 991

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IPE+  + +FN F   A R   R   G GLGL+I +  + +  G + + S     
Sbjct: 992  DTGEGIPENQLQRIFNAF-EQASRDFTRSEMGSGLGLAISKRLVEMMDGQIRVVSRVGRG 1050

Query: 782  TTINCRIP 789
            +T     P
Sbjct: 1051 STFTVDFP 1058


>gi|237710952|ref|ZP_04541433.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454796|gb|EEO60517.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 634

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 11/227 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  E  L  K +A  +++ +K +F+ ++S+E+R+PL  I+GF+ +L +       ++++Q
Sbjct: 392 VSGEELLVAKEKA-EESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSP--AEKAQ 448

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL+L+NDILD++ +++G +K  +      D++   + +++T  +     
Sbjct: 449 YCDIIQKNSDLLLHLINDILDISRMESGKIKFVWEEC---DVVELCQTALSTAEYGRKTS 505

Query: 669 IKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
              + +  + S V   D QRL Q+   +LSNA  F+  GS  +  A  + +     SV +
Sbjct: 506 ALFLFETPVASLVIKTDAQRLKQVLINLLSNAAKFTPSGSIKLAIAIDKQHQQLELSVSD 565

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G  IP D    VF RF       Q  G GLGL+I    +   GG +
Sbjct: 566 TGCGIPSDKSDRVFERFEKLNEYSQ--GTGLGLAISRLIVENLGGKI 610


>gi|171743214|ref|ZP_02919021.1| hypothetical protein BIFDEN_02342 [Bifidobacterium dentium ATCC
           27678]
 gi|171278828|gb|EDT46489.1| hypothetical protein BIFDEN_02342 [Bifidobacterium dentium ATCC
           27678]
          Length = 344

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +  E  E L+ AD+++   V +VS+ELR+P++ +    + +    +          +E I
Sbjct: 103 SFNEMAEELQHADQMRRDMVANVSHELRTPVSALQAMVENMADGVV----EPTPANLESI 158

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV 671
              +  L +L+  +LDL+ ++AG   L        D ++E  +   IA   H ++I + +
Sbjct: 159 LNQTHRLSDLIAFLLDLSRMEAGAASLQIEKFNFRDFIDETVEPLEIADAGHAHDIEMHI 218

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
            ++ ++     D+ RL Q+F+ I++NA+  S+  +TV+++A   +D G  + +V N GS 
Sbjct: 219 PANIEME---GDQDRLRQLFTNIIANALKHSADDTTVLIEAHENKDFGTIVTNVVNFGSQ 275

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           IP++    +F RFV        +  G GLGLSI      LHGG V +     G
Sbjct: 276 IPQEARSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVRVVDDQRG 328


>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 1233

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 163/367 (44%), Gaps = 32/367 (8%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS-----------PGTHIRNIAATC 487
            +D + +G+  +  D    + NP++ S+   E N              P    R +    
Sbjct: 588 AMDAVEDGLWDWYLDSEQIICNPSYYSMLGYETNEFPALISSIEELIHPDDRDR-VKTYR 646

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
             Y +E  G     A  T F    KS +    L    V+E++   +P ++ + T  ++T 
Sbjct: 647 DLYLSEPSG-----AYETEFRMRTKSGRYLWVLSRGRVVEFTADGMP-SRMLGTHKDITR 700

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E AL E       A+  K+ F+ ++S+E+R+P+  IIG   +L+ +    L  +Q 
Sbjct: 701 QKSNEVALLEAKHDAELANMYKSEFLANMSHEIRTPMNAIIG---MLQLASRTQLTLQQQ 757

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+     S+  LL ++NDILD + ++AG ++L      L  +L+ V    A    E  +
Sbjct: 758 DYLNKAGFSAESLLRIINDILDFSKIEAGKLELESVPFSLEKVLDHVIDMNALSAQEKGV 817

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720
            + + S    G +   D  RL Q+   +LSNA+ F+  G   +     D G+        
Sbjct: 818 ELLLFSPLTTGLTLKGDPLRLGQVLVNLLSNAVKFTQDGEIEL--GCEDVGERDTQISLK 875

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I  +   ++F+ F     +   Q  G GLGLSI +  +++ GG++S+ S  
Sbjct: 876 FWVRDTGIGISREQQANLFDAFSQADGSTTRQYGGTGLGLSISKHLVSMMGGNLSVESEP 935

Query: 779 EGVTTIN 785
           +  +T +
Sbjct: 936 QQGSTFS 942


>gi|23009598|ref|ZP_00050588.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 160

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/113 (42%), Positives = 66/113 (58%)

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +GS  AD +R+ QI   +LSNA+ FS  G  V ++A R+  +   +V + G  I  ++  
Sbjct: 5   IGSVFADGKRVRQILFNLLSNAVGFSEPGQQVRVEARREGAELRLTVVDRGRGIAPEVID 64

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            VF+RF SN    + RGVGLGLSIV SF+ LHGG V I S+    T + C  P
Sbjct: 65  RVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGRVEIDSAAGRGTCVTCLFP 117


>gi|290955693|ref|YP_003486875.1| two-component sensor kinase [Streptomyces scabiei 87.22]
 gi|260645219|emb|CBG68305.1| two-component sensor kinase [Streptomyces scabiei 87.22]
          Length = 485

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 128/257 (49%), Gaps = 18/257 (7%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TML  ++   +VR     TE  + LR+       FV   S+ELR+PL ++ G+ DL + +
Sbjct: 236 TMLEHIDDALAVR-----TEAEQRLRR-------FVADASHELRTPLMSVRGYADLFQYA 283

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN-EVKQ 656
              S   ++ +++  + A +  +  L++D+L LA +DA  ++     +   DL+   V+ 
Sbjct: 284 AAHS-PEERDKHLARLRAEAARMGYLLDDLLMLARLDAADVETPLR-LEEADLVELAVQA 341

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           + A +    +  + V +         D  RL Q+   +L+NA   + +G+ V L+    +
Sbjct: 342 ADAFRAGHPDHPLTVTTGSGPVHLRLDPLRLRQVLDNLLTNAAVHTPRGTEVRLEVRVAS 401

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           G     + + G  IP D  + VF+RF  V  A    R G GLGL++  S +  HGG +++
Sbjct: 402 GTAEVRITDFGPGIPADDQERVFDRFYRVDKARSRDRGGSGLGLAVARSLVRAHGGTLTL 461

Query: 775 SSSDEGVTTINCRIPSK 791
            +++ G TT   R+PS+
Sbjct: 462 -TAEPGTTTFTVRLPSQ 477


>gi|188578874|ref|YP_001915803.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523326|gb|ACD61271.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 727

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 52  EQELLRAKQAAEAAMLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 108

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             ++SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 109 TATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLRLSL 168

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 169 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 228

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 229 GIGIAPDQQTRLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 288

Query: 785 NCRIP 789
              IP
Sbjct: 289 WFEIP 293


>gi|223937742|ref|ZP_03629643.1| osmosensitive K+ channel signal transduction histidine kinase
           [bacterium Ellin514]
 gi|223893535|gb|EEF59995.1| osmosensitive K+ channel signal transduction histidine kinase
           [bacterium Ellin514]
          Length = 859

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 122/245 (49%), Gaps = 8/245 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +R ++ ++EK++ L +++ +  + +  +S+E+R+P+  I      L       L+  Q
Sbjct: 610 DRLRLQQ-VSEKSKILAESERLTKTLLNSISHEIRTPIAAIQSAASNLVELNDAPLSEPQ 668

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  I  ++  L  LV ++L++  +++G +K   S   +NDL++   +    ++  + 
Sbjct: 669 QSMVGEIQEATDRLNRLVGNVLEITRIESGHVKPRLSLCDVNDLVHVCIKETRKQLARHG 728

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + + +     L     D   + Q  S +LSNA   +  G++V L A  +  +F+ SV + 
Sbjct: 729 VTVDL--QPHLPLVPMDFVLIQQALSNLLSNAALHTRAGTSVRLTARVEQTEFVLSVADQ 786

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G+ IP +    +F++F    NA  G   G GLGLS+V+ F+  HGG V   +  +G    
Sbjct: 787 GAGIPAEALPRIFDKFYRAPNAPAG---GTGLGLSLVKGFVEAHGGSVLAQNDPKGGAIF 843

Query: 785 NCRIP 789
             R+P
Sbjct: 844 AIRLP 848


>gi|91223693|ref|ZP_01258957.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
 gi|91191185|gb|EAS77450.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
          Length = 573

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 137/274 (50%), Gaps = 24/274 (8%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I +   + +   V V  +      L +  E    A+  K+ F+  +S+E+R+PL
Sbjct: 176 LIERAVIDIETKEKLQRIVEVRTT-----QLAKAREEAELANRSKSEFLAMMSHEIRTPL 230

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+LK S   +L+ +Q   +  +  S+ +LL +++DILDL+ +++G  +LN   
Sbjct: 231 NSVLGMLDILKQS---TLSEEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQW 287

Query: 645 IVLNDLLNEV---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           I L D +  V   ++ IA K +        +++ K   F  D  RL QI   ++ NA+ F
Sbjct: 288 INLRDTVTFVISQQKQIAKKKNLKFKLNCTVTNDK--QFWIDSTRLSQILFNLIGNAIKF 345

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GVG 755
           + +G  V +  +  + + + S+ + G  I +   + +F  F    H+G R       G G
Sbjct: 346 TDEGE-VKVSVSEQDAELVISISDTGIGISKAKQEHLFTAF----HQGDRSITRRFGGTG 400

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  + +  G +++ S +   +T    IP
Sbjct: 401 LGLAITKHLVEMMRGKIAVKSDEHVGSTFTISIP 434


>gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1133

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 117/245 (47%), Gaps = 10/245 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +N+ L + D +K+ F+ + S+ELR+PL  IIG  + L      +LNS  +  +  I 
Sbjct: 432 LEAQNKQLTELDRLKDEFLANTSHELRTPLNGIIGIGEFLLEENTKNLNSITTSNLAIIV 491

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVIS 673
           +S+  L NLVNDILD + +    ++L    I +  ++  V       + +N N+++    
Sbjct: 492 SSARRLSNLVNDILDFSKIRYHKLELQVRAIDVRIVVESVITLNRVLVGKNKNLQLTNAI 551

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD----FIFSVKNN 726
              L   +AD  RL QI   +++NA+ F+  G   I   L + +++ D     I  V + 
Sbjct: 552 PTDLPPVLADENRLQQILYNLIANAIKFTESGKVEISASLYSPKEDQDEATEIIIMVSDT 611

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP D    +F  F        R+  G GLGL++ +  + L GG + + S     +  
Sbjct: 612 GIGIPPDQLDRIFESFEQGEGSIIRKYGGTGLGLAVTKELVELQGGRIWVESEVGVGSRF 671

Query: 785 NCRIP 789
           N  +P
Sbjct: 672 NVTLP 676


>gi|332702886|ref|ZP_08422974.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553035|gb|EGJ50079.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 519

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 130/253 (51%), Gaps = 17/253 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R ER + +   A   A++ KN+F+ ++S+E+R+P+  I+G T+LL  +K   L+++Q + 
Sbjct: 123 RMEREVKDARRAAEAANKAKNTFLANMSHEIRTPMNGILGMTNLLLETK---LSAEQQEI 179

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  L+ ++ND+LD + +++G + +    + L D++  + +++       ++++
Sbjct: 180 LGLVRDSAHALMTVLNDVLDFSKIESGRLAMTEEKLDLCDIVQSIYKALRHAAAAKSLQL 239

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------NGDFIF 721
                  + S + ADR R+ QI   ++ NA+ F+S GS  +   A D       NG   F
Sbjct: 240 TFDVAADVPSMIRADRSRIRQILLNLMGNAIKFTSCGSVRLAVDAPDGVAPNDPNGSGRF 299

Query: 722 SVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            ++    + G  IP D  + +F  F        RR  G GLGL+I      + GG++++ 
Sbjct: 300 PLRLRVIDTGPGIPADKHEQIFESFTQLDGSLTRRHGGTGLGLTIARELARMMGGNITLQ 359

Query: 776 SSDEGVTTINCRI 788
           S+    +T    I
Sbjct: 360 STPGKGSTFTATI 372


>gi|317478664|ref|ZP_07937819.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905175|gb|EFV26974.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 479

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 119/217 (54%), Gaps = 4/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++G LN +Q Q    I  ++  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGVLNDEQEQLSNSIKENADRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            +  ++L++  V+AG +++        +L+    ++   +  +  I+I+V   + K+   
Sbjct: 311 GITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVEYPEEKMPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   V++  AR +GDF+   V++ G  I     +S+F
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVVI-GARHDGDFVEMYVQDFGKGIDPRYHQSIF 429

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 430 DRYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLAVQS 465


>gi|294627283|ref|ZP_06705869.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598365|gb|EFF42516.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 1191

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 21/241 (8%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQL 906

Query: 668  RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIF 721
                 + D    +   D  R+ QI   +L NA+ F+ +GS     T + +  R       
Sbjct: 907  AFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLPQHTRQG--LRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             V++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V+++
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGAVTVA 1021

Query: 776  S 776
            S
Sbjct: 1022 S 1022


>gi|269968417|ref|ZP_06182433.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
 gi|269826965|gb|EEZ81283.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
          Length = 573

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 137/274 (50%), Gaps = 24/274 (8%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I +   + +   V V  +      L +  E    A+  K+ F+  +S+E+R+PL
Sbjct: 176 LIERAVIDIETKEKLQRIVEVRTT-----QLAKAREEAELANRSKSEFLAMMSHEIRTPL 230

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+LK S   +L+ +Q   +  +  S+ +LL +++DILDL+ +++G  +LN   
Sbjct: 231 NSVLGMLDILKQS---TLSEEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQW 287

Query: 645 IVLNDLLNEV---KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           I L D +  V   ++ IA K +        +++ K   F  D  RL QI   ++ NA+ F
Sbjct: 288 INLRDTVTFVISQQKQIAKKKNLKFKLNCTVTNDK--QFWIDSTRLSQILFNLIGNAIKF 345

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GVG 755
           + +G  V +  +  + + + S+ + G  I +   + +F  F    H+G R       G G
Sbjct: 346 TDEGE-VKVSVSEQDAELVISISDTGIGISKAKQEHLFTAF----HQGDRSITRRFGGTG 400

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  + +  G +++ S +   +T    IP
Sbjct: 401 LGLAITKHLVEMMRGKIAVKSDEHVGSTFTISIP 434


>gi|227484749|ref|ZP_03915065.1| sensor histidine kinase VanSG [Anaerococcus lactolyticus ATCC
           51172]
 gi|325846326|ref|ZP_08169316.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|227237271|gb|EEI87286.1| sensor histidine kinase VanSG [Anaerococcus lactolyticus ATCC
           51172]
 gi|325481590|gb|EGC84629.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 348

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L+K +   N  + +++++LR+PLT+IIG+  +L   K    N ++ +Y+  +  ++  L
Sbjct: 119 TLKKRENEDNDLITYLAHDLRTPLTSIIGYLSMLDEMK-DLPNKQREKYIRQLLETALGL 177

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +L+N   ++A ++ G   ++   I L   L +++  +   M ENN +I + S+G +  F
Sbjct: 178 EDLINQFFEIARLNNGEFSIHKEKIDLEYFLIQLRDELYPMMKENNHKINISSEGSI--F 235

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           V  D  ++ +    IL NA+ +S   + + +K  +     I  + N   ++ E   +++F
Sbjct: 236 VNVDPNKMKRALENILKNAILYSYANTEIKVKIYQTYKCVILKIINKADTLEEAQIRNMF 295

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           N+F  ++ A   ++ G GLGL I +  I LH G + + SS+  V  I  R+ +K
Sbjct: 296 NKFTRLNLARNSKKVGSGLGLPIAKEIIELHEGKIEVESSNNEVIVI-VRLKNK 348


>gi|163851540|ref|YP_001639583.1| histidine kinase [Methylobacterium extorquens PA1]
 gi|163663145|gb|ABY30512.1| Histidine kinase [Methylobacterium extorquens PA1]
          Length = 631

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 134/280 (47%), Gaps = 15/280 (5%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSF 572
           L G L +  D+V+ Y  +   N       V  T + +RA R L  +   LR+A+ +K   
Sbjct: 337 LAGRLSVAFDNVILYERLQRANVTLEQRVVERTAELIRANRRLDMQRSDLRRANSLKTEI 396

Query: 573 VQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQ-----YVEYISASSTILLNL 623
           +  ++++L++PL+ I+G      DL+   +  +  ++++Q      VE+I AS+T L+++
Sbjct: 397 LGTIAHDLKNPLSVILGRSEMLADLIGLDQGDASGAEKAQAAMLTQVEHIRASATRLIDM 456

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++ ++  A  DA  + L    + L  L  EV ++           + +   G L +   D
Sbjct: 457 IDSLMADAMNDALDITLRREPVDLAGLAREVCEANRPLAESKGQSLVMDLAGPL-TLCGD 515

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF 742
            +RL +    ++SNA+ +S  G  + +    + GD + +V + G  + PED  + +F R+
Sbjct: 516 AERLREALDNLVSNAIKYSYPGGAIAVSVREEGGDLVCAVADQGPGLSPEDAGR-LFGRY 574

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             +S    G     GLGLSIV+    LHGG     S   G
Sbjct: 575 QRLSAKPTGGEGSTGLGLSIVKRIAELHGGRAEAFSDGPG 614


>gi|134291112|ref|YP_001114881.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134301|gb|ABO58626.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 529

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 20/266 (7%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR---SPLTNIIGF 590
           P  Q ++ F+ +T  +   + L E    L  +    + F+  +++ELR   +PL + +G 
Sbjct: 128 PGGQ-LVGFIKITRDMTERKRLAE----LEASTHRLSVFIAMLAHELRNHLAPLRHSVGV 182

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
              L            +Q  + +      L  LV+D+LD+  + AG ++L+ + + + DL
Sbjct: 183 LQSLPEPA-----PALAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKLELDTAPVTIRDL 237

Query: 651 LNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +    +S+  K+   E ++R+ V  D  L     D  RL+Q+   +L NA  FS  GS +
Sbjct: 238 VCRGVESVQPKLAAREQHLRVDV-PDAPL-VVRGDAARLVQVLHNLLDNASKFSQYGSQI 295

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFIN 766
            + A  ++G  +  V + G  I     +S+F+ F      G     G GLGL+I  SF+ 
Sbjct: 296 DIGARMEDGAAVIRVSDRGIGIAPGALESIFDLFDQGNATGTLASDGFGLGLAICRSFVE 355

Query: 767 LHGGHVSISSSDEGV-TTINCRIPSK 791
           LHGG +S  S+  G   T   R+P++
Sbjct: 356 LHGGAISAESAGPGQGATFVVRLPAE 381


>gi|119470180|ref|ZP_01612946.1| sensor protein LuxQ [Alteromonadales bacterium TW-7]
 gi|119446601|gb|EAW27875.1| sensor protein LuxQ [Alteromonadales bacterium TW-7]
          Length = 602

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 130/254 (51%), Gaps = 11/254 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T S + E  L  +     +A + K+ F+  +S+E+R+P+  ++G  +LL  ++   L 
Sbjct: 220 NITISKQREFELQAQTLKAEEASQTKSKFLSVMSHEIRTPIHAVMGMIELLLDTE---LT 276

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIAT 660
            +Q Q V Y ++S+ IL  L+ D+LD + +++G    +K  +   +L +  N V Q    
Sbjct: 277 PEQQQLVNYANSSTEILYGLITDVLDFSKIESGTVSCLKKPFDIKLLTE--NIVGQFNII 334

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +  ++ +    I +      V D+ RL Q+   I+SNA  +++ G  + L     N   +
Sbjct: 335 EKSDDILFTTHIDESIPQYVVGDQYRLGQVLFNIMSNAFKYTTHGQ-INLNVVLQNERLV 393

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F VK++G  I +     +F  F  V+++   +  GVGLGLSI ++ + + GG +++ +  
Sbjct: 394 FEVKDSGIGIAKKHLDLIFKPFSQVNDSINRKSEGVGLGLSISKNLLGIMGGEITVDTQL 453

Query: 779 EGVTTINCRIPSKE 792
              +T    IP +E
Sbjct: 454 GLGSTFTISIPFEE 467


>gi|170725399|ref|YP_001759425.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169810746|gb|ACA85330.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 793

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 138/256 (53%), Gaps = 18/256 (7%)

Query: 548 SVRAERALTEKN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           S   +R+L  K+  E  +KA + ++ F+  +++ELR+P+  +IG  DLL+ SK    +S+
Sbjct: 252 SSAKQRSLEFKSAKEFAKKASQTQSEFLSMMNHELRTPMNAVIGSLDLLRLSKQ---SSE 308

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + +E  ++S+T L+N++NDILD+  +++G M+L +S   +N+ ++ + +S      + 
Sbjct: 309 SMELIETATSSATNLMNILNDILDINKIESGKMQLEHSPFSINETIDGLVKSFLPSAQKK 368

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDF 719
            I++ +     + S  + D ++  ++   ++SNA+ F+    T     +  + ++ + + 
Sbjct: 369 QIQLNIKESSMVPSQVIGDEKKTRRVLYNLISNAIKFTDLKCTQGRVNLNCEVSQQSEEL 428

Query: 720 IF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           ++   ++++NG  I E     +F  F + A +   R   G GLGL I  S +   GG ++
Sbjct: 429 LYIKLTIEDNGIGINESDQSKLFAPF-TQAQKSVTREYGGTGLGLPICRSLVQQMGGKIT 487

Query: 774 ISSSDEGVTTINCRIP 789
           ++S +   +T    +P
Sbjct: 488 LTSKEGVGSTFTVELP 503


>gi|7208795|emb|CAB76929.1| ethylene receptor (ETR-1 protein) [Citrus sinensis]
          Length = 386

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 34/264 (12%)

Query: 547 DSVRAERALTEKNEAL----RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L ++N AL    R+A+     +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 75  ESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 134

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE I  SS +L  L+ND+LDL+ ++ G ++L   T  L+ +  EV   I 
Sbjct: 135 ---TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIK 191

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--------- 709
                  + + +     L  + V D +RL+Q    ++ NA+ F+ +G+  I         
Sbjct: 192 PIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSES 251

Query: 710 LKAARDNGDFIFSVKNN----------GSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           L+ +R    F   ++N+          GS I P+D+  ++F +F  N     R   G GL
Sbjct: 252 LRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDI-PNLFTKFAQNQAIALRNSSGSGL 310

Query: 757 GLSIVESFINLHGGHVSISSSDEG 780
           GL+I + F+NL  GH+ I S   G
Sbjct: 311 GLAICKRFVNLMEGHIWIESEGLG 334


>gi|47564779|ref|ZP_00235823.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47558152|gb|EAL16476.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 361

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 137/254 (53%), Gaps = 11/254 (4%)

Query: 546 TDSVRAERALTEK-NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +D  RA    +EK  EA+ + D     K+  V ++++ LR+PLT+++G+ DL+   K  +
Sbjct: 111 SDIARAINIASEKLKEAVERGDFAESSKDQLVVNLAHVLRTPLTSVLGYLDLILNEK--N 168

Query: 602 LNSKQSQYVEYIS-ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           L ++Q +Y   I+ A S  L +L++++ ++  ++ G+ +L+   I +++LL ++ + +  
Sbjct: 169 LTAEQIKYYSTIAFAKSQRLESLIDELFEITRMNYGVQQLDKKNINISELLVQLNEELYP 228

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +N +  ++  +  L +   D   L ++F  +++NA+ + S G  V +    ++GD +
Sbjct: 229 LLEKNQLEARLRVEPNL-TINGDGNLLARVFENLVTNAVRYGSNGKFVDMNGYIEDGDVV 287

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             + N G SI E+    +F+ F +   A   Q+   GLGL I ++ +  H G +S + S+
Sbjct: 288 VQIINYGESISEEELPYLFDMFYTGDKARTMQKNSTGLGLYIAKNIVEQHDGKIS-AESN 346

Query: 779 EGVTTINCRIPSKE 792
              T    R+P +E
Sbjct: 347 VIRTIFEVRLPKEE 360


>gi|330501102|ref|YP_004377971.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           NK-01]
 gi|328915388|gb|AEB56219.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           NK-01]
          Length = 598

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 5/222 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           R  + +++ F+   S+ELR+P+T + + F+ L +   L S + ++ + +  +      L+
Sbjct: 373 RAFERVRSEFILRASHELRTPITGMHMAFSLLRERLSLPS-SGREQELMRTVDEEMHRLV 431

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+L+ +    G+  L      L +++ +  Q    K  E  + +       L    
Sbjct: 432 QLIDDLLNFSRYQNGMQTLQRRPCDLAEMIRQAPQRFVEKTAEREVTLVCEVHEPLPRLS 491

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  +L ++   ++ NA+ +S+ G  V L+  R     I SV+++G  IP +    +F  
Sbjct: 492 LDAAQLERLIDNLIDNALRYSNPGDEVRLQVRRHGEQVIVSVQDDGEGIPFEQQARIFEP 551

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
           FV    R  + GVGLGL++    + LHGG +S+ S   EG T
Sbjct: 552 FVQVGRR--KGGVGLGLALAREIVQLHGGQLSVHSRPGEGST 591


>gi|294667422|ref|ZP_06732639.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292602755|gb|EFF46189.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 1191

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 21/241 (8%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQL 906

Query: 668  RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIF 721
                 + D    +   D  R+ QI   +L NA+ F+ +GS     T + +  R       
Sbjct: 907  AFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLPQHTRQG--LRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             V++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V+++
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGAVTVA 1021

Query: 776  S 776
            S
Sbjct: 1022 S 1022


>gi|281491991|ref|YP_003353971.1| two-component system histidine sensor kinase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281375700|gb|ADA65204.1| Two-component system, histidine sensor kinase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 517

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 26/262 (9%)

Query: 530 IIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           I PLP+  ++ M+T ++V+              + R+  +  N+F+ +VS+EL++PLT+I
Sbjct: 277 ITPLPDLDSRFMVTMMDVS--------------SYRRTVDAHNAFIANVSHELKTPLTSI 322

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF +LL+T  + S ++K   +   I+  S+ L+NLV D L L   +  I K     I L
Sbjct: 323 KGFAELLETDSISSSDTK--NFASIINKESSRLMNLVQDTLLLTKQNHRIDK---KKINL 377

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             L+  + QS   +++E ++ ++  S  +  +F  +   +  IF  ++ NA+ ++     
Sbjct: 378 TALIQNILQSSGPQINEKSLHLE--SQIEEITFKTNEPMVHSIFENLIENAIKYTPANGQ 435

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFIN 766
           + +    +    IFSV +NG  + E   + +F+RF   +  R +  G GLGL+IVE  + 
Sbjct: 436 IFVSLHLEQNKVIFSVTDNGPGLSEIQKERIFDRFYRVDESRAEVSGTGLGLAIVEKNVQ 495

Query: 767 -LHGGHVSISSSDEGVT-TINC 786
            LHG    +S   +G T T+N 
Sbjct: 496 ELHGTIDVVSILGKGTTFTVNL 517


>gi|158320426|ref|YP_001512933.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158140625|gb|ABW18937.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 587

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 7/240 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVE 611
           A+ E    +R+ +++++ FV +VS+EL++PLT+I GF + LK+   G++  +    ++++
Sbjct: 347 AIMEDVTEIRRLEKMRSDFVTNVSHELKTPLTSINGFVETLKS---GAVEDRDVAMRFLD 403

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   +  L  L+NDIL L+ +++   K   + I  +D L EV   I        I +  
Sbjct: 404 IIEIETDRLKRLINDILTLSEIESMETKFIVNEIFPSDTLMEVVDFIIPLADSKEIELFT 463

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  L S   +R    QI   +L N++ ++  G  V L A   + + +  VK+ G  IP
Sbjct: 464 DIDSALPSIYGNRDWFKQIVINLLDNSIKYTPIGGKVELTAYTKDNNIVLHVKDTGIGIP 523

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +     +F RF  V  A   +  G GLGL+IV+  +    G +++ S +   T     IP
Sbjct: 524 KKDLPRLFERFYRVDKARSRKVGGTGLGLAIVKYIVLSFNGKINVDSEEGNGTEFIVTIP 583


>gi|21232865|ref|NP_638782.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21114694|gb|AAM42706.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 603

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 175/404 (43%), Gaps = 48/404 (11%)

Query: 410 GGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G  IW+ +  +  ++  E +Y       G  +  + E + +     RI L NPAF  L+ 
Sbjct: 199 GTVIWLLQRQIRRRLAAEQEYLRASGRAGSVLQTVREPIVLLDARQRIVLHNPAFAELYG 258

Query: 469 TEE--NRL------------SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            EE  N L             P  H R +A    R   + + WD        F+ E++  
Sbjct: 259 LEERGNELMLLDDVGDGAWRDPQIHQR-LADVLLR---DRELWD--------FEHEQRGA 306

Query: 515 QGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTD-------SVRAE---RALTEKNEALR 563
            G L  +   ++    +PLP+  +  +  + V+D         R +   R L  K E + 
Sbjct: 307 DGVLRTM---LINARRMPLPDDGEEEVVLMTVSDISLQKVSQQRIQELNRQLEGKVEQVS 363

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + +    +F   VS++LR+PL ++ GF+D L      + + K   Y+E IS+S+  + +L
Sbjct: 364 EVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASL 423

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           ++D+L  + +    ++L    + +  L+ E +  +   +   N   +V      L   +A
Sbjct: 424 IDDLLVYSRLGRSALRLQ--AVDMQSLVAETRAILDANVQSENTGHRVDWHIAPLPVLIA 481

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIPEDMCKSVF 739
           D   + Q++  ++ NA+ +S+K     ++   +   +G   F+V++NG+    D    +F
Sbjct: 482 DENMMRQLWMNLMGNAVKYSTKREVAKIQIGYEPMPDGGHYFTVRDNGAGFDMDYSGKLF 541

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
             F       +  G G+GL+ V   +  HGG V +    DEG T
Sbjct: 542 GVFQRLHKVSEYPGTGIGLASVRRVLARHGGRVWAEGVVDEGAT 585


>gi|323465649|gb|ADX69336.1| Sensor protein [Lactobacillus helveticus H10]
          Length = 618

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 192/427 (44%), Gaps = 56/427 (13%)

Query: 386 ETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETI-DH 442
           E  K   H+ NG  +  V + SN   G +   F  L+V+++   + +   + + +++  H
Sbjct: 212 EMQKQALHIANGDYSSQVKIYSNDELGQLAKAFNTLSVRIEQSQEESDSERRRLDSVLSH 271

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLF 500
           +S+GV      G + + N    S    +E+ +   P   +  +  T S+        DL 
Sbjct: 272 MSDGVLATDRHGNVSVVNHMALSYLNADEDEIINRPIAEVLGLKDTSSQ--------DLI 323

Query: 501 AA---IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           ++   I+ + D       GT     D ++ ++   L    T      V+ SV     +TE
Sbjct: 324 SSQKEIVVTVD------PGT----RDEIILHASFSLIKRVTGF----VSGSVCVLHDVTE 369

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISA 615
           +    +K +  +  FV +VS+ELR+PLT++  + + L     G+    +   +++E    
Sbjct: 370 Q----QKNENSQRQFVSNVSHELRTPLTSLQAYIEALNE---GAWKDPEIAPKFLEVTQQ 422

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLND----LLNEVKQSIAT---KMHENNIR 668
            ++ ++ ++ND+L L+ +D G+ K++   + LND    +LN     + T   K H+    
Sbjct: 423 ETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYT 482

Query: 669 IKVISDGKLGSFV----ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           IK     +LG+       D  +++Q+   I++NA+ +S  G  + ++     G  I S+ 
Sbjct: 483 IK----RELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSIS 538

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+RF  V  A    + G GLGL+I +  +  H G +   SS+   +
Sbjct: 539 DQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGS 598

Query: 783 TINCRIP 789
           T    +P
Sbjct: 599 TFYISLP 605


>gi|285016906|ref|YP_003374617.1| two-component system sensor/regulator hybrid protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472124|emb|CBA14631.1| putative two-component system sensor/regulator hybrid protein
           [Xanthomonas albilineans]
          Length = 1142

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 175/393 (44%), Gaps = 45/393 (11%)

Query: 402 VIVTSNPRGGTIWMFENLTV--QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           +++TS  RG  + + E + V  Q   E ++N   ++   T+D++S GV+V  P  R+   
Sbjct: 605 LVLTSLLRGSGMDLGEVVAVLDQAGQELRFNR--EILSTTLDNISAGVSVVDPSMRLVAW 662

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-----IITSFDDERKSL 514
           N  ++ L+   ++ L  G  + ++       YN   G  L A      I       R   
Sbjct: 663 NRRYQRLFGYPDSMLYVGRSVADLI-----RYNAERG-QLVAGQVEEQISRRIAHMRAGT 716

Query: 515 QGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK-------- 564
           +   E +    +V+E    PLP    + T+ ++TD  RAE+AL E NE L +        
Sbjct: 717 KHVFERIHHDGTVIEMRGQPLPGGGYITTYNDITDYKRAEQALLEANETLEQRVAVRSRE 776

Query: 565 ---ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A + K  F+  +S+++  PL     F   L+ +   S   +Q    E + AS     
Sbjct: 777 AELAQQSKTRFLAAISHDVLQPLNAARLFASALRDAAHQS--EEQRHLAERVDASLRAAE 834

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++ +LD++ +DAG ++     +  + LL E+    A       +R++V +  +     
Sbjct: 835 ELLDGLLDVSRLDAGGLRPTIEDVDASALLRELAAQYAPVAASRGLRLRVYA--RPCWVR 892

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
           +DR+ L ++    L+NA+ ++ +G  V+    R  G  +   V + G  IP+   + +F 
Sbjct: 893 SDRRLLRRVLQNFLANALRYTRQGRIVL--GMRGRGTALELQVWDTGPGIPQHHLRQIFE 950

Query: 741 RFVSNAHRGQR------RGVGLGLSIVESFINL 767
            F     R Q+      +G+GLGLSI +    L
Sbjct: 951 EF----QRYQQPFDWGEQGLGLGLSICQRISRL 979


>gi|254443113|ref|ZP_05056589.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257421|gb|EDY81729.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 601

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL E+ +    A + K+ F+  +S+ELR+PL  I+GF DLL+  +  +L S+    +E 
Sbjct: 206 KALKEERDRTEAASKAKDRFLSVISHELRTPLNPILGFLDLLEEDQ--ALRSESKDQLEL 263

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL +++ ++D + +D G + L  +     +L  +++  +     E N+   V 
Sbjct: 264 MRRSGEHLLLMIDKVVDFSELDRGELTLVRNERTWAELRRDIRSRLQLLAEEKNLEFHVH 323

Query: 673 SDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNG---DFIFSVKNN 726
            +G      V D +R LQI  ++ SNA+ F+ KGS  I    A+ D G        V + 
Sbjct: 324 CEGAARDRLVLDNRRTLQIIDELGSNALKFTDKGSVAIALCLASGDGGRTHRLAIEVSDT 383

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I       +F+ FV       R   G GLGLS  ++     GG + + S     +T 
Sbjct: 384 GCGIDCKAIDRLFDPFVQEKSGWTRDAGGFGLGLSACQAIAGAMGGAIRVESEIGIGSTF 443

Query: 785 NCRIP 789
              IP
Sbjct: 444 TVEIP 448


>gi|129306893|gb|ABO30409.1| GacS [Pseudomonas sp. K93.2]
 gi|129306897|gb|ABO30411.1| GacS [Pseudomonas sp. K94.37]
 gi|129306899|gb|ABO30412.1| GacS [Pseudomonas sp. P12]
 gi|129306907|gb|ABO30416.1| GacS [Pseudomonas sp. Q37-87]
          Length = 204

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|91783499|ref|YP_558705.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91687453|gb|ABE30653.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 657

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER L  +  A + A+E    K+ F+  +S+ELR+PLT ++    +L+   +  L  +   
Sbjct: 271 ERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEM--IPELPDQARA 328

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  +  +   L++D+LDL  V  G ++L+  T+ ++D+++ V +   +++      
Sbjct: 329 SVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHDVMDSVLELFRSEIQVKQQD 388

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V  + +    +ADR RL Q+   ++ NA  F+  G  + ++   +      +V++ G 
Sbjct: 389 VHVHKNARHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTRDERMHVQIAVEDTGI 448

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I  D    +FN F        R+  G+GLGL+I ++  ++HGG V+  S
Sbjct: 449 GIEPDQIGKLFNAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTVTAQS 498


>gi|17229733|ref|NP_486281.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131332|dbj|BAB73940.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 377

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 117/226 (51%), Gaps = 1/226 (0%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +++K+  +   ++E R+PLT I    ++L T        K+ ++++ I +++  L NL+ 
Sbjct: 147 NQMKSQHLYMAAHEFRNPLTTIKLSAEMLNTYGEKMSEEKKQKHIDRIESATDSLTNLLE 206

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +IL L   +A    LN + I +     E+ +S+   + E    I  ++D K      D Q
Sbjct: 207 NILTLGRAEAENFVLNPTLIEVVSFCEEIVESLRLTLKEQ-YEINFVTDTKSCIACLDEQ 265

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            L  + + +LSNA+ +S +GST++L+   D  D  F +K+ G  IP +    +F  F   
Sbjct: 266 LLWHLLNNLLSNAVKYSPRGSTILLRLTCDESDVYFQIKDQGVGIPPEFQAKLFEPFQRA 325

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           A+     G GLGL+IV+  ++LH G +SI ++    T+   ++P K
Sbjct: 326 ANVATIPGTGLGLAIVKQCVDLHQGTISIDTTLGQGTSFVVKLPLK 371


>gi|332702019|ref|ZP_08422107.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552168|gb|EGJ49212.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 522

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            +  +VT+ VR E AL    +   +A   K+ F+  +S+ELR+PL  ++G T+L   S+ 
Sbjct: 120 FSLTDVTERVRTELALRRSEQEAEEASRAKSEFLASMSHELRTPLGGVLGMTELALMSE- 178

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              ++    Y++ +  S   L +LVND+LDL+ ++A  ++L      L   L      + 
Sbjct: 179 --PSAAVRTYLQMVLRSGQALRDLVNDLLDLSRIEARKLELESVDFDLRAELALALDPLI 236

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG- 717
                N + ++      + + V  D  RL Q+ + ++SNA+ F+ +G   +   +   G 
Sbjct: 237 LDARANGLCLRHSVAPAVPAMVRGDSGRLRQVITNLVSNALKFTEQGGITVAVESDTTGA 296

Query: 718 -DFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            D + F V + G  I  D  ++VF+ F  + +     R G+GLGL+I    ++L GG +
Sbjct: 297 PDLLRFRVTDTGIGIAADQLEAVFDTFRQLRDKDGRTRGGMGLGLAICRRLVDLMGGRL 355


>gi|288918260|ref|ZP_06412614.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
 gi|288350297|gb|EFC84520.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
          Length = 1065

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 13/239 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A + + E+ + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++
Sbjct: 466 QARQEIEERAQQLALASKYKSEFLANMSHELRTPLNSLLVLARLLAQNPTRNLTPKQVEF 525

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-- 667
              I ++ + LL L+NDILDL+ V+AG M ++     L  L+++++ +      E  +  
Sbjct: 526 ANVIHSAGSDLLQLINDILDLSKVEAGKMDVHREWADLGKLVDDLQATFQPLTAEKGLDF 585

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNG---DF 719
            ++V  D     F  D QRL Q+   +LSNA+ F+  G   +          D+G     
Sbjct: 586 AVEVAPDVPTRLFT-DEQRLEQVLRNLLSNAVKFTEDGQVALRIHTSHPLEPDSGATSKI 644

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F+V + G  I ++  K +F  F        R+  G GLGLSI      L  G + + S
Sbjct: 645 AFAVVDTGVGISDENLKRIFGAFQQGDGTTSRKYGGTGLGLSISREVAALLDGDLRVES 703


>gi|197295473|ref|YP_002154014.1| hybrid two-component system kinase-response regulator protein
            [Burkholderia cenocepacia J2315]
 gi|195944952|emb|CAR57564.1| hybrid two-component system kinase-response regulator protein
            [Burkholderia cenocepacia J2315]
          Length = 1380

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 143/320 (44%), Gaps = 34/320 (10%)

Query: 481  RNIAATCSRYYNESDGWDLF-AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            R   A   R++   DG  +F + ++T   D   S  G  +++ D                
Sbjct: 947  REGRADDERWHRTKDGRRIFCSGVVTPISD--TSFNGFAKIVRD---------------- 988

Query: 540  LTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIG-----FT 591
            +T    +D    E AL  +  A  +A   +++K+ F+  +S+ELR PL N+IG       
Sbjct: 989  MTLRKQSDDANRE-ALAREQAAREQALSSNQLKDEFIAVLSHELRHPL-NLIGVKSEMLP 1046

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             L +T  + ++        + + A + I    ++D+LDL+ +  G + L    + L  +L
Sbjct: 1047 RLPETRDIPAVREAADSIRQAVRAQAQI----IDDLLDLSRIQTGKLALELGRVDLTAML 1102

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
              +  +    +H   + +K     +    +AD  R  QIF  ++SNA+ F+     ++++
Sbjct: 1103 RGIADTCERDVHARGLVLKTELPTEPAIALADPVRCEQIFWNLMSNALKFTQSHGEIVVR 1162

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             A +       V ++G  I  D    VF+ F        R G+G+GL++V   + +HGG 
Sbjct: 1163 LAHEGRMLRVDVIDDGQGIDGDTLPHVFDMFRQAPRDRTRGGLGIGLALVRQLVEMHGGR 1222

Query: 772  VSISSSDEGV-TTINCRIPS 790
            ++ +S  +G  TT+   +P+
Sbjct: 1223 IAAASDGQGRGTTMTVWLPA 1242


>gi|193213741|ref|YP_001994940.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
 gi|193087218|gb|ACF12493.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
          Length = 1332

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 128/254 (50%), Gaps = 15/254 (5%)

Query: 544  NVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            ++T+  + E+ + EK +  R       KA+     F   VS++L++PL  I   +  L +
Sbjct: 1079 DITERKKYEQDILEKEQRYRLLAHDLQKANRELKDFAYIVSHDLKAPLRAIGSLSSWLYS 1138

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              +  L+ +  + +  +      + +L+  IL  + +  G +K  +  I L+ L++E+  
Sbjct: 1139 DYVDRLDEEGKETLSLLVGRVKRMHDLIEGILQYSRI--GRIKEAFVEIELDLLIDEIVD 1196

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             ++   H     I V+ D  L + +A++ R++Q+F  ++SNA+ ++ K    I     +N
Sbjct: 1197 FLSIPKH-----ISVVKDTSLPNIIAEKTRMMQVFQNLISNAVKYNDKEHGEISIGHVEN 1251

Query: 717  GD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            G+ + F VK+NG  I E   + +F  F + A R +    G+GL+IV+  I ++GG +++ 
Sbjct: 1252 GETWQFYVKDNGPGIDEKYHEKIFQIFQTLAPRDEHESTGIGLTIVKKIIEMYGGTIAVE 1311

Query: 776  SSDEGVTTINCRIP 789
            S+    TT    +P
Sbjct: 1312 STMGKGTTFWIELP 1325


>gi|168019826|ref|XP_001762445.1| ETR3 ethylene receptor protein [Physcomitrella patens subsp.
           patens]
 gi|162686523|gb|EDQ72912.1| ETR3 ethylene receptor protein [Physcomitrella patens subsp.
           patens]
 gi|163644180|dbj|BAF95740.1| ethylene receptor homolog [Physcomitrella patens]
          Length = 747

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 132/268 (49%), Gaps = 34/268 (12%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+ A   L E+N AL  A +        +N F+  +++E+R+P+  II  + LL+ ++L
Sbjct: 314 ESMLARDLLMEQNVALEHARQEAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   VE +  SS +L  L+ND+LDL+ ++ G ++L+  T  L ++  EV   + 
Sbjct: 374 ---TPEQRSMVETVLKSSNLLATLINDVLDLSRLEDGSLELDIQTFNLPNVFKEVLNLVK 430

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  +++ +     +    V D +RLLQ    ++ NA+ F+ +G   ++      + 
Sbjct: 431 PIASVKRLQVNLTMGPDIPEIAVGDDKRLLQTALNVVGNAVKFTKEGHVNVIVGLERPEY 490

Query: 713 ARD---------NGDFIF----SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            RD         +GD  F     V++ G  + P+D+   +FN+FV       R   G GL
Sbjct: 491 PRDPRQPDFRPLSGDNHFYLRVQVRDTGLGLNPQDI-PMLFNKFVQADSTTTRNYGGTGL 549

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTI 784
           GL+I + F+NL  GH+ I S   G  +I
Sbjct: 550 GLAICKRFVNLMDGHIWIESEGVGRGSI 577


>gi|158338635|ref|YP_001519812.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158308876|gb|ABW30493.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 468

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 113/210 (53%), Gaps = 8/210 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F    S+ELR+PLT I    +++       ++ K ++ +  IS+++  +  LV D+L LA
Sbjct: 219 FTADASHELRTPLTVIKTSVEVMMNHP-ERVHPKDAKKLAAISSATAQMNRLVEDLLFLA 277

Query: 632 TVDAGI--MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
             D  +   +  ++ + L+++L ++   +        +   +++ G +  + V D  +L 
Sbjct: 278 RTDTSVPTARREWTRVALDEVLKDLVDFLDPSAQTQGV--TLVTQGIVPMTLVGDAMQLA 335

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAH 747
           ++FS +L NA+ ++  G TV L  AR N   I SV++ G  I ++    +FNRF   + H
Sbjct: 336 RLFSNLLRNAVAYTPSGGTVTLSVARTNQVTIISVEDTGIGISKEQIPYIFNRFYRVDKH 395

Query: 748 RGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           R +R+ G+GLGL+I +S   LH G ++I S
Sbjct: 396 RARRQGGLGLGLAIAQSIAQLHKGKITIQS 425


>gi|186681893|ref|YP_001865089.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
 gi|186464345|gb|ACC80146.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
          Length = 477

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 536 AQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            Q+ L+  N    V+   + LT     L ++ + +  FV +VS+ELR+PLT + G+   +
Sbjct: 219 GQSQLSVKNAPSEVKELAQTLTMLLSRLSQSWKQEREFVSNVSHELRTPLTIVHGYLQSV 278

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +  +L   Q + +E  ++ +   + L+ D+LDLA  D+G +     + VLNDL+ EV
Sbjct: 279 -LRRQNNLTQTQQEALETAASEAERTIRLLQDLLDLARADSGYLYFQMKSYVLNDLIEEV 337

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  K + + I IK+ S        AD  RL Q+   ++ NA+ +S   + +  K  +
Sbjct: 338 --VMMAKKYSDRI-IKIESKVDRIEVKADYSRLKQVLLNLIDNAIKYSEIDTPIAFKLNQ 394

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                I  V + G  IP      +F RF  V  +      G GLGLSIV++ +   GG V
Sbjct: 395 LEDRAIVEVCDRGYGIPLQQQARIFERFYRVDESRSHTTGGCGLGLSIVKTLVEGMGGSV 454

Query: 773 SISSSDEGVTTINCRIP 789
           S+ S     +T    +P
Sbjct: 455 SVQSKLGEGSTFTISLP 471


>gi|329132040|gb|AEB77981.1| GacS [Pseudomonas sp. S8-151]
          Length = 203

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|329132020|gb|AEB77971.1| GacS [Pseudomonas sp. F96.26]
          Length = 203

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSAQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|328880420|emb|CCA53659.1| putative two-component system sensory histidine kinase [Streptomyces
            venezuelae ATCC 10712]
          Length = 1337

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 15/248 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A + L ++ + L  A   K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y
Sbjct: 758  QARQELEDRAQQLALASTYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTAKQVEY 817

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I ++ + LL L+NDILDL+ V+AG M  N   + L  LL+ V+ +      + ++  
Sbjct: 818  AGIIHSAGSDLLQLINDILDLSKVEAGKMDFNPERVPLRRLLDYVEATFRPLTTQKSLAF 877

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD---------NGD 718
             V +   +    V D  RL Q+   +LSNA+ F+  GS  + ++ A D          G 
Sbjct: 878  SVTTAAGVPVDLVTDDSRLRQVLRNLLSNAVKFTEHGSVELRIEPASDAELPVPVHRGGP 937

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + F V + G  I  +  +++F  F        R+  G GLGLSI      L GG ++++
Sbjct: 938  VVAFRVTDTGIGIAPENLEAIFGAFQQADGTTNRKYGGTGLGLSISREIAFLLGGALTVT 997

Query: 776  S-SDEGVT 782
            S + EG T
Sbjct: 998  SVAGEGST 1005


>gi|293376524|ref|ZP_06622752.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292644750|gb|EFF62832.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 426

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV   S+EL++PLT I   TD++  ++  ++N +Q +++++I + +  +  LV+D+L
Sbjct: 197 QQQFVADASHELKTPLTVIHTTTDVILANQHQTIN-EQRKWIDHIKSETERMSKLVSDLL 255

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA +D+  + L  ++  L++ +      + +   E+   + +  +  L  F  + +R+ 
Sbjct: 256 YLAKIDSNEVLLKSASFDLSEAIINAALPLESVFFESGKELVLDIEPDL-MFTGEEERIA 314

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   +L NA+  S   + ++L   +++  FI +VKN G  IP +    +F RF      
Sbjct: 315 QVAIILLDNALKHSPTQTQIMLSLKKEHEQFILAVKNKGVGIPPEHLDKIFERFYRADES 374

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             R   G GLGLSI ++ ++ H G +S+ S     TT     P+K
Sbjct: 375 RARDTGGYGLGLSIAKTIVSQHHGQISVKSIPNDETTFTVIFPTK 419


>gi|255034925|ref|YP_003085546.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254947681|gb|ACT92381.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 647

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 127/248 (51%), Gaps = 15/248 (6%)

Query: 540 LTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           L FVN+ D  +    E AL +      KA + K SF+ ++S+E+R+PL  IIG  +LL  
Sbjct: 238 LLFVNLHDVEKRKAHELALIDAQAQAEKARKTKESFLANMSHEIRTPLNGIIGLGNLLAA 297

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+  Q++ V+ +  SS  LLN++NDILD++ +D G   +  ++  L  L  ++  
Sbjct: 298 TE---LSEAQAELVDMLRQSSGSLLNILNDILDISKIDEGKFSIIPTSTDLRVLGKQIID 354

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---- 711
            +  K  E  + +++ I          D  RL QI   ++ NA+ F+  G+ V LK    
Sbjct: 355 LMQFKADEKKLELRLEIGKDIPDCVTVDGMRLNQILLNLVGNALKFTGTGN-VTLKMEHL 413

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
           A    G  I F+V++ G  + +D   ++F+ +   S     Q  G GLGL+I +  + L 
Sbjct: 414 AQTAAGHTIRFAVEDTGIGMSDDHLANIFSEYGQASENISHQYGGTGLGLTISQKLVRLM 473

Query: 769 GGHVSISS 776
           G  + ++S
Sbjct: 474 GSELEVNS 481


>gi|150002977|ref|YP_001297721.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           vulgatus ATCC 8482]
 gi|254883619|ref|ZP_05256329.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642313|ref|ZP_07996971.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|149931401|gb|ABR38099.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Bacteroides vulgatus ATCC
           8482]
 gi|254836412|gb|EET16721.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317386036|gb|EFV66957.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 855

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 126/251 (50%), Gaps = 10/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D  R+     E  +A R+A+++   +   +  +++++++P+ +I+G+TDLL+     +  
Sbjct: 313 DITRSNHYRRELEKAKRRAEDLLAAREKLMLTITHDIKAPVGSILGYTDLLERI---TTE 369

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+  + +S+  LL+LV  +LD   +DA  M +N  +   + L + +  S      
Sbjct: 370 ERQRFYLNNMQSSANHLLSLVKSLLDYHRLDAHKMDVNQVSFNPHQLFDTIYISFKPMAD 429

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + +    +  L   ++ D  R+ QI   +LSNA+ F+ +G  + L+AA +NG   FS
Sbjct: 430 SKQLELNYHCNESLNRVYIGDPFRIRQIAENLLSNALKFTKEGG-ITLRAALENGQLHFS 488

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + + G  I ++  + +F  F +  H  Q + G GLGL+I    + L  G + I S  +  
Sbjct: 489 ISDTGCGISQEEQQRIFQEF-TRLHNAQGQEGFGLGLAITRKLVLLLEGDIKIESEQDKG 547

Query: 782 TTINCRIPSKE 792
           +  +  +P  E
Sbjct: 548 SCFHVYLPLPE 558


>gi|26988825|ref|NP_744250.1| two-component sensor protein [Pseudomonas putida KT2440]
 gi|24983627|gb|AAN67714.1|AE016402_6 two-component sensor protein [Pseudomonas putida KT2440]
          Length = 1211

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 126/245 (51%), Gaps = 15/245 (6%)

Query: 557 EKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEY 612
           E  +A ++AD+    K++F+  +S+E+R+P+  +IG  +L +K +  G ++      +E 
Sbjct: 697 ELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVDRSA---LEL 753

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
              S+  LL L+ DILD+  +++G + L    + L  L+  V +    +  +  + ++V 
Sbjct: 754 AHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKGLALEVQ 813

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
           I+       + D  R  Q+ S ++SNA+ F+  G   I     D+G          V+++
Sbjct: 814 IAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRISVRLLDDGTSTPAVLELEVRDS 873

Query: 727 GSSIPEDMCKSVFNRFV-SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D  + +FN F+ +N H +G R G GLGL+I  +   + GG +S+ S ++  T +
Sbjct: 874 GIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMMGGSLSMKSLEDVGTQV 933

Query: 785 NCRIP 789
             ++P
Sbjct: 934 RLKMP 938


>gi|163788810|ref|ZP_02183255.1| hypothetical protein FBALC1_11252 [Flavobacteriales bacterium
           ALC-1]
 gi|159876047|gb|EDP70106.1| hypothetical protein FBALC1_11252 [Flavobacteriales bacterium
           ALC-1]
          Length = 942

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 3/244 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSK 605
           + ++A+ ++ E  E ++  D+IK  F  ++S+E R+PL  I G      K S    + + 
Sbjct: 411 EKLKAQLSIVEM-ERIKDLDKIKTRFFANISHEFRTPLALISGPINRAFKQSAKDEVITI 469

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            +++   I  ++  L NLV+ +LDL+ +++G + L+     L   L  +  S  +     
Sbjct: 470 SNKHFNIIQNNANRLQNLVDQLLDLSKIESGKVHLSLKQGGLIKFLRSIIYSFESMAERE 529

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI +      +L S   D+ +L +I + ILSNA  ++S+  +V      +       + +
Sbjct: 530 NISLNTSFPEELDSAFYDKDKLEKIVTNILSNAFKYTSENGSVTTTIDYNKNYLNLEITD 589

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  I ++  K +F RF       + +G G+GL++ +  I LH G +S+ S+    TT  
Sbjct: 590 TGKGIDKEEVKRIFERFY-RVEGSEEKGSGIGLALTKELIELHNGKISVDSTKHKGTTFK 648

Query: 786 CRIP 789
            R+P
Sbjct: 649 VRLP 652


>gi|91789987|ref|YP_550939.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
 gi|91699212|gb|ABE46041.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
          Length = 919

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L   N+ L++ D +K+ F+  V++ELR+PLT+I   +++L  +   SL  +Q +++
Sbjct: 668 ATAKLRAANDRLKELDRMKDDFMSTVTHELRTPLTSIRALSEILLETPQASLAERQ-KFL 726

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I   +  L  L+N +LD+A +++G  + + S + L +++ E   +     ++ ++ + 
Sbjct: 727 GIIVKEAERLTRLINQVLDMAKIESGNAEWHTSELDLREVIEESVAATYATFNDRHVTLT 786

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSKGSTVILKAARDNGDFIFSVKNNGS 728
                      ADR RL+Q+   +LSNA+ F   ++G  V +   ++ G     V++NGS
Sbjct: 787 QDLASHTPRIRADRDRLIQVMLNLLSNAVKFCHPTRGQ-VHVSLRQEPGGLRVDVRDNGS 845

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I     K +F RF  V +    + +G GLGL I    I   GG + + S      T + 
Sbjct: 846 GISAANQKIIFERFRQVGDTMTNKPQGTGLGLPISRHIIERFGGRLWVQSEPGNGATFSF 905

Query: 787 RIP 789
            +P
Sbjct: 906 TLP 908


>gi|124267689|ref|YP_001021693.1| two-component regulatory protein sensor kinase [Methylibium
           petroleiphilum PM1]
 gi|124260464|gb|ABM95458.1| two-component regulatory protein sensor kinase [Methylibium
           petroleiphilum PM1]
          Length = 906

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 103/215 (47%), Gaps = 6/215 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PL  + G  D L     G    +  +    + A +  L  +
Sbjct: 659 ESERLRNSLLSALSHDLRTPLAALYGLADTLVDGTQG----EAQEMARALGAEARRLNAM 714

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V  +LD+A + +G ++L+     + +++    +S+   +  + +R ++     L  F  D
Sbjct: 715 VGKLLDMARLQSGAVQLDRQWQPIEEVVGSALRSLGPALARHPVRTELPDGLPLVCF--D 772

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
              + ++   +L NA  ++  GS V + A     + + SV + G  +P    +++F +FV
Sbjct: 773 AALIERVLCNLLENAAKYTPSGSAVTIGARVQGEELVVSVSDLGPGLPAGREEALFEKFV 832

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
                    GVGLGL+I  + +  HGGH+     D
Sbjct: 833 RGERESATAGVGLGLAICRAIVEAHGGHIRAGRGD 867


>gi|325672914|ref|ZP_08152608.1| sensor histidine kinase [Rhodococcus equi ATCC 33707]
 gi|325556167|gb|EGD25835.1| sensor histidine kinase [Rhodococcus equi ATCC 33707]
          Length = 480

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 121/230 (52%), Gaps = 13/230 (5%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++AD  +  FV  V +ELR+PL  ++   ++L+     S+    ++    +S  +  L
Sbjct: 241 AAKEADARR--FVADVFHELRTPLAALVAVAEVLE-EDADSMAPDTARAARIVSRGTERL 297

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L  D+++++  D G   L    +  +DL+  V++S+AT+   +  R+   +DG +   
Sbjct: 298 SRLTEDVIEISRFDNGRADL---VLEPHDLVEVVQESLATRGFGSRARLG--ADGAVPCR 352

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V DR+R+  +   +++NA        TV ++   D  D + +V ++G+ IP ++   +F 
Sbjct: 353 V-DRRRIDIVVGNLVANAFAHGRPPVTVAVRT--DGDDAVITVTDHGAPIPAEVRAHLFE 409

Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  ++  RG+  G G+GL++ E  + LHGG +S++S   G  T   R+P
Sbjct: 410 RFYKADESRGRTDGSGIGLALAEENVTLHGGTISVTSGSTG-NTFTVRLP 458


>gi|262204065|ref|YP_003275273.1| ATP-binding region ATPase domain-containing protein [Gordonia
           bronchialis DSM 43247]
 gi|262087412|gb|ACY23380.1| ATP-binding region ATPase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 410

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+ +  + L   D+I+   +  +++ELR+PLT I   TD ++      + +  SQ  + 
Sbjct: 135 RAINQLAQRLDSQDDIRKRMLSDLAHELRTPLTTIGAITDAIED----GIRAPDSQTFDV 190

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++T L  L  DI  +++ D   M L+ +TI +N+LL    +  A    +  + + ++
Sbjct: 191 VRTATTRLQRLAEDIATVSSADEHQMPLHPATITVNELLIATYEEAADLFTDAKVTLGIV 250

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731
           +         D +R+ Q+   +L+NA+  SS G  V++KA       +  SV + G  IP
Sbjct: 251 TTAARVHIHVDAERMSQVLLNLLTNALRHSSPGQRVVVKADTAPAHAVRISVVDCGDGIP 310

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                 +F+RF        R   G G+GL+I  S +  HGG
Sbjct: 311 PQHLPHIFDRFYRTDSSRTRDAGGSGIGLTIARSIVEDHGG 351


>gi|49476767|ref|YP_034606.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49328323|gb|AAT58969.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 340

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 130/264 (49%), Gaps = 10/264 (3%)

Query: 535 NAQTML------TFVNVTDSVRAERALTEKNE-ALRKADEIKNSFVQHVSYELRSPLTNI 587
           N QT L      +F N+  S+    A  EK     ++++E +   +  +S+++R+PLT+I
Sbjct: 71  NLQTRLFTSNDQSFHNIVFSINELIAELEKVRIKAKRSEESRKQLLSSISHDIRTPLTSI 130

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG+ D LK     S   KQ +Y++ +   S  L +LV++I ++A +DA    L    +  
Sbjct: 131 IGYIDALKDGVAASEIEKQ-EYLKILYMKSNNLKHLVDEIFNMAKLDANEFPLKEEKLDF 189

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++  EV      ++ ++NI+++V+        +AD   L++I   ++ N++ +   G  
Sbjct: 190 SEVTREVLIEFLPEISKHNIKLQVLMPESTCPIIADHLSLMRIIGNLIKNSIYYGKDGKI 249

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFI 765
           + ++    +  +   + + G  IP+   ++VF R      +      G GLGLSI ++ +
Sbjct: 250 IGVELLETDAAYELLIWDKGPGIPKHDLQNVFERMYRSEQSRNSSFGGSGLGLSISKALV 309

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             +GGH+ + S     TT    IP
Sbjct: 310 ERNGGHIWVESIPWERTTFGFSIP 333


>gi|15673418|ref|NP_267592.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724425|gb|AAK05534.1|AE006373_13 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 517

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 137/264 (51%), Gaps = 30/264 (11%)

Query: 530 IIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           I PLP+  ++ M+T ++V+              + R+  +  N+F+ +VS+EL++PLT+I
Sbjct: 277 ITPLPDLDSRFMVTMMDVS--------------SYRRTVDAHNAFIANVSHELKTPLTSI 322

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI--MKLNYSTI 645
            GF +LL+T  + S ++K   +   I+  S+ L+NLV D L L   +  I   K+N +T+
Sbjct: 323 KGFAELLETDSISSSDTK--NFASIINKESSRLMNLVQDTLLLTKQNHRIDKKKINLTTL 380

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           + N L     QS   +++E ++  +  S  +  +F  +   +  IF  ++ NA+ ++   
Sbjct: 381 IQNIL-----QSSGPQINEKSLHFE--SQIEEITFKTNEPMVHSIFENLIENAIKYTPAN 433

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764
             + +    +    IFSV +NG  + E   + +F+RF   +  R +  G GLGL+IVE  
Sbjct: 434 GQIFVSLHLEQNKVIFSVTDNGPGLSEIQKERIFDRFYRVDESRAEVSGTGLGLAIVEKN 493

Query: 765 IN-LHGGHVSISSSDEGVT-TINC 786
           +  LHG    +S   +G T T+N 
Sbjct: 494 VQELHGTIDVVSILGKGTTFTVNL 517


>gi|150017295|ref|YP_001309549.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903760|gb|ABR34593.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 625

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 9/231 (3%)

Query: 555 LTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS----KQS 607
           + E++  L KA   D++K  F  ++S+E R+PL  ++    LL        N+    K S
Sbjct: 348 IQEQSRLLDKAAEYDKLKTEFFANLSHEFRTPLNVMLSTLQLLNLIGANKTNTDSKDKIS 407

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   +  +   LL LVN+++D+  +DA   KL+     +   + ++  S+        +
Sbjct: 408 KYYNIMKQNCYRLLRLVNNLIDITKIDAEYFKLSLKNENIISTIEDITLSVTDYAKNKGL 467

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            I   ++ +      D  ++ +I   +LSNA+ F+S G ++ +     +   I SV++ G
Sbjct: 468 DIIFDTNVEEKLMACDADKIERIMLNLLSNAIKFTSSGGSIFVNILDKDSSIIVSVRDTG 527

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             IP+D   S+F RFV    +   +R G G+GLS+V+S + LH G + I+S
Sbjct: 528 VGIPKDKQLSIFKRFVQVDKSLSRKREGSGIGLSLVKSLVELHNGTIKINS 578


>gi|326333581|ref|ZP_08199820.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1]
 gi|325948597|gb|EGD40698.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1]
          Length = 473

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 20/243 (8%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E +L E++    ++++    FV   S+ELR+PLT I G+T+L +              + 
Sbjct: 244 ETSLAERH----RSEQQVRQFVADASHELRTPLTTIRGYTELAQQRP-----EAVPTALG 294

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +   S  +  LV D+L LA +D G   L   ++ L  LL E           +  R+++
Sbjct: 295 KVEEESLRMTALVEDLLLLARLDQG-RPLARDSVDLTRLLLEAVDDARVVDPSHTWRLEL 353

Query: 672 ISDGKLGS----FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +D   G        D QRL Q+ S +L+N    +  G+TV ++   D     F V ++G
Sbjct: 354 PADADSGEAEVIVTGDAQRLHQVISNLLTNERRHTPAGTTVTVRVRPDG----FDVHDDG 409

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
              P  +    F RF       QR  G GLGL++V + +  HGG V ++S   G TTI  
Sbjct: 410 PGFPPALVPHAFERFTRADEARQRDGGAGLGLALVHAIVTSHGGTVRLTSV-PGDTTIAV 468

Query: 787 RIP 789
           R+P
Sbjct: 469 RLP 471


>gi|255971802|ref|ZP_05422388.1| predicted protein [Enterococcus faecalis T1]
 gi|255962820|gb|EET95296.1| predicted protein [Enterococcus faecalis T1]
          Length = 378

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 133/255 (52%), Gaps = 8/255 (3%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+  +  ++ F    + +R E  L  + +  ++A++ KN  + +++++L++PLT++IG+ 
Sbjct: 120 PIALSANLMEFDKELNQIRQEVNL--RQQQAKEAEQRKNDLIVYLAHDLKTPLTSVIGYL 177

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL   +L      + +Y+      +  L  L+N+  ++A  +   ++L  +++ L+ +L
Sbjct: 178 TLLH-DELEISTQLREKYLAISLEKAEHLEELINEFFEIARFNLSNIELEPTSVRLDRML 236

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           N+V       + +  + I+      L S   D  ++ ++F  ++ NA+++S  G+T+ L 
Sbjct: 237 NQVSYEFLPMLKQKQLTIETDFTEAL-SIHLDVDKMQRVFDNLVQNAINYSYAGTTISLS 295

Query: 712 AARDNGDFIFSV--KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
              DN +   ++   N+G ++P +    +F +F  +  A +  R G GLGL++ +  + L
Sbjct: 296 TKVDNENQRVNIYFTNHGPTVPPEKLARIFEQFFRLDTARQTNRGGAGLGLAVAKKIVEL 355

Query: 768 HGGHVSISSSDEGVT 782
           HGG +S  S +E  T
Sbjct: 356 HGGVLSAESENEKTT 370


>gi|183601476|ref|ZP_02962846.1| sensor protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683982|ref|YP_002470365.1| sensor protein [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191024|ref|YP_002968418.1| sensor protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196430|ref|YP_002969985.1| sensor protein [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219082|gb|EDT89723.1| sensor protein [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621632|gb|ACL29789.1| sensor protein [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249416|gb|ACS46356.1| sensor protein [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250984|gb|ACS47923.1| sensor protein [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178767|gb|ADC86013.1| Sensory Transduction Protein Kinase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794013|gb|ADG33548.1| sensor protein [Bifidobacterium animalis subsp. lactis V9]
          Length = 366

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 128/251 (50%), Gaps = 22/251 (8%)

Query: 542 FVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           F N  D V +  RA  +  E L+  D+++   + +V++ELR+P++ +    + +    + 
Sbjct: 107 FSNKYDEVGQLARAFNDMAEELQHEDQLRRDMIANVAHELRTPVSALQAMVENMADGVV- 165

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-- 658
                  + +E I A +  L +L++ +LDL+ ++AG   LN       D ++E    +  
Sbjct: 166 ---EPNEKNMESILAQTHRLTDLISFLLDLSRIEAGSSSLNIEEFNFADFIDETIAPLKL 222

Query: 659 --ATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +++ H  E +I   ++ +G       D  RL Q+++ I++NA+  S   ++V+++A  
Sbjct: 223 LDSSRGHDIETHIPSNIVMEG-------DVDRLRQLYTNIIANALKHSLDDASVLVEAHV 275

Query: 715 DN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRG-QRRGVGLGLSIVESFINLHGG 770
           D+  G  + ++ N GS IPED+   +F RFV     RG +  G GLGLSI +    LHGG
Sbjct: 276 DDSRGTVVTNIVNFGSQIPEDVRHKIFQRFVMGITTRGSESGGTGLGLSIAKWAATLHGG 335

Query: 771 HVSISSSDEGV 781
            + +     GV
Sbjct: 336 SIHVVDDSRGV 346


>gi|94967505|ref|YP_589553.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549555|gb|ABF39479.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 759

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 158/348 (45%), Gaps = 38/348 (10%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           VAVF   G++  +N AF   W    +   PGT    I    SR     +      A   +
Sbjct: 436 VAVFDRAGQLLFANQAFNLAWG---DGPPPGT----IGDVRSRMVESKEAPLTIGA---A 485

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             +   ++QG  EL S  ++      L P   T+L+  N+   V  +RA   + EAL   
Sbjct: 486 LSEGEATIQG--ELYSVRLVPLPATSLTPRGGTLLSMTNLHLRVERDRA---REEAL--- 537

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLV 624
                 FV H   ELR+PL  I GF +++        N+K S Q  + I   S  LL L+
Sbjct: 538 -----GFVTH---ELRTPLVAIQGFAEMMTRMP----NAKASAQAPKTILRESRRLLALI 585

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           N  LD+   DAG   L  + I +  L+ +V   ++   + +++++ +  + ++  FV AD
Sbjct: 586 NSYLDVLRTDAGARPLRPAIIPVRKLILQVFDLMSPLTYTSDVQLTLNCEPQI--FVQAD 643

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
              L      ++SNA+ +  +G+ V + A         SV N G  I +    SVF+ FV
Sbjct: 644 EPLLTGAILNLVSNAIKYGRRGTEVQVSAGISGTKLQISVHNFGEPISD--TGSVFDPFV 701

Query: 744 SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +    R+ G GLGL++V+  ++ HGG  ++ S++   TT    IP 
Sbjct: 702 RGSKDEDRQQGWGLGLALVKRIVDKHGGETTVQSNEAAGTTFTITIPG 749


>gi|41406358|ref|NP_959194.1| hypothetical protein MAP0260 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394706|gb|AAS02577.1| hypothetical protein MAP_0260 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 496

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 23/237 (9%)

Query: 563 RKADEIK-NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           R+A E +   FV   S+ELR+PL  I G+T+L  T ++G      +Q +  +++ +  + 
Sbjct: 263 RQASETRVRQFVADASHELRTPLAAIRGYTEL--TQRMGDDREAVAQAMSRVASETERMT 320

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLN----DLLNEVKQSIATKMHENNIRIK---VISD 674
            LV D+L LA +D+G   L    + L+    D +N+    +A   H+  + +    V+  
Sbjct: 321 RLVEDLLLLARLDSG-RPLEREPVDLSRLAVDAVNDAH--VAGPDHQWELDLPEEPVVVT 377

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G       D  RL Q+ + +L+NA   +  G+ V  + + +    +  V +NG  IP ++
Sbjct: 378 G-------DAARLHQVLTNLLANARVHTGAGTVVTTRLSTEPAHTVLQVIDNGPGIPAEL 430

Query: 735 CKSVFNRFVSNAHRGQRRG--VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF RF        R+G   GLGL+IV + +  H G +S++SS  G T    R+P
Sbjct: 431 QSEVFERFARGDSSRSRKGGSTGLGLAIVSAVVKAHNGTISVNSS-PGHTEFTVRLP 486


>gi|332799977|ref|YP_004461476.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332697712|gb|AEE92169.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 426

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  ML  +       A+RA+    EA  K    +  F+   S+EL++PL  I    D+L 
Sbjct: 171 ALIMLFIIFFVSKFFADRAIKPVQEAFEK----QKQFIADASHELKTPLAIINTNADVLL 226

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    + + QS+++ YI + +  +  L ND+L LA +D   +K+ ++   L+ L+    
Sbjct: 227 ANPQDYIKN-QSKWLYYIKSEAERMTKLTNDLLYLAQMDYSDVKMIFTDFNLSQLVENAI 285

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            ++     E+ I ++   +  L       +++ Q  + +L NA+ +++    VI+   R 
Sbjct: 286 LTMEAVFFEHGISLEYEIEPNL-IICGSCEQIQQAVTILLDNAVKYTNTKGKVIVSLKRQ 344

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             + + SV N G  IP++    VF+RF        R+  G GLGL+I ++ I  HGG +S
Sbjct: 345 QSNVLLSVANTGEGIPQENISKVFDRFYRTDESRTRKSGGYGLGLAIAKTIIEQHGGKIS 404

Query: 774 ISSSDEGVTTINCRIPS 790
           + S+    T    ++P+
Sbjct: 405 VKSNPNENTIFYVKLPA 421


>gi|283455805|ref|YP_003360369.1| Signal transduction histidine kinase [Bifidobacterium dentium Bd1]
 gi|283102439|gb|ADB09545.1| Signal transduction histidine kinase [Bifidobacterium dentium Bd1]
          Length = 358

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 13/233 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +  E  E L+ AD+++   V +VS+ELR+P++ +    + +    +          +E I
Sbjct: 117 SFNEMAEELQHADQMRRDMVANVSHELRTPVSALQAMVENMADGVV----EPTPANLESI 172

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKV 671
              +  L +L+  +LDL+ ++AG   L        D ++E  +   IA   H ++I + +
Sbjct: 173 LNQTHRLSDLIAFLLDLSRMEAGAASLQIEKFNFRDFIDETVEPLEIADAGHAHDIEMHI 232

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
            ++ ++     D+ RL Q+F+ I++NA+  S+  +TV+++A   +D G  + +V N GS 
Sbjct: 233 PANIEME---GDQDRLRQLFTNIIANALKHSADDTTVLIEAHENKDFGTIVTNVVNFGSQ 289

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           IP++    +F RFV        +  G GLGLSI      LHGG V +     G
Sbjct: 290 IPQEARSDIFRRFVKGKTGPGTESGGTGLGLSIARWAAQLHGGTVRVVDDQRG 342


>gi|259047805|ref|ZP_05738206.1| sensor histidine kinase [Granulicatella adiacens ATCC 49175]
 gi|259035482|gb|EEW36737.1| sensor histidine kinase [Granulicatella adiacens ATCC 49175]
          Length = 401

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 125/235 (53%), Gaps = 6/235 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISASST 618
           E  R  ++ K+  + +VS+++R+PLT+I+G+  L+    K+ + ++K+   + Y  A   
Sbjct: 158 EEERAIEKSKDELITNVSHDIRTPLTSILGYLGLIVNQPKIDTEDAKRYAEIAYSKAEQM 217

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL  V+D+ +  T       L  + I + + L ++      +  + ++ I+V S+ +  
Sbjct: 218 KLL--VDDLFEYTTSRPNGAPLRLNDIPIVNFLEQIAADFELEAQKRHMAIEVSSENRDV 275

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D ++++++ + +LSNA+ +  + ST++++  +  G    +V+N G  I +++   +
Sbjct: 276 VLELDAEKMVRVINNLLSNAIKYGHENSTILMEVLKKEGVITIAVRNEGDPISKEVLDQL 335

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF     +   +  G GLGL+I E+ ++ HGG +  + S+ G T+    +P++
Sbjct: 336 FTRFYRAEGSRSKETGGTGLGLAIAENIVHSHGG-IMFAESENGQTSFYVCLPTE 389


>gi|257439802|ref|ZP_05615557.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
 gi|257197711|gb|EEU95995.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
          Length = 449

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 123/247 (49%), Gaps = 12/247 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +   +S+ ++R L E NE +R+       F  +VS+EL++PLT+I G+ +L++T    +
Sbjct: 203 LIPFAESIHSDRLLRENNEKMRQ------DFTANVSHELKTPLTSISGYAELIETGI--A 254

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-T 660
             +   ++   I   ++ ++ LVNDIL L+ +D+         +   DLL+  K  +   
Sbjct: 255 KPADVPEFGRKIHVEASRMIQLVNDILQLSHLDSVSETHAQPDMETVDLLDVAKDCVERQ 314

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDF 719
           K++     I +   G+    + +R +L ++   +  NA+ ++  G  V ++ +   +G  
Sbjct: 315 KLNAQRSFISLTYLGESARVLGNRDQLDELCQNLCDNAIRYNRPGGKVQLITSCTRDGHC 374

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +VK+NG  IP+D   SVF RF  V  +      G GLGL+IV+    +H   + + S 
Sbjct: 375 TLTVKDNGIGIPKDAQSSVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLESE 434

Query: 778 DEGVTTI 784
               TTI
Sbjct: 435 VNVGTTI 441


>gi|255022541|ref|ZP_05294527.1| sensor histidine kinase [Listeria monocytogenes FSL J1-208]
          Length = 459

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620
           L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q++Y+  +S  +T L
Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQAEYLTVLSEETTRL 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +L   +L LA++D          + L +   ++ Q       E  + I +  D    ++
Sbjct: 289 SSLTKQLLILASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINL--DLADVNY 346

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D + L Q++S +L+NA+ F+ +   + +    +  +    ++++G  I +     +F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQDGNIQVHLYEETTNIFVEIQDSGVGISKADIAKIFE 406

Query: 741 RFVS-NAHRGQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF   N  R +  G  GLGLSI +  I LH G +++ SS E  TT   ++P
Sbjct: 407 RFYKVNESRTREEGSSGLGLSICKKIITLHRGEITVQSSPEKGTTFTVKLP 457


>gi|254773314|ref|ZP_05214830.1| sensor histidine kinase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 496

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 23/237 (9%)

Query: 563 RKADEIK-NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           R+A E +   FV   S+ELR+PL  I G+T+L  T ++G      +Q +  +++ +  + 
Sbjct: 263 RQASETRVRQFVADASHELRTPLAAIRGYTEL--TQRMGDDREAVAQAMSRVASETERMT 320

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLN----DLLNEVKQSIATKMHENNIRIK---VISD 674
            LV D+L LA +D+G   L    + L+    D +N+    +A   H+  + +    V+  
Sbjct: 321 RLVEDLLLLARLDSG-RPLEREPVDLSRLAVDAVNDAH--VAGPDHQWELDLPEEPVVVT 377

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G       D  RL Q+ + +L+NA   +  G+ V  + + +    +  V +NG  IP ++
Sbjct: 378 G-------DAARLHQVLTNLLANARVHTGAGTVVTTRLSTEPAHTVLQVIDNGPGIPAEL 430

Query: 735 CKSVFNRFVSNAHRGQRRG--VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF RF        R+G   GLGL+IV + +  H G +S++SS  G T    R+P
Sbjct: 431 QSEVFERFARGDSSRSRKGGSTGLGLAIVSAVVKAHNGTISVNSS-PGHTEFTVRLP 486


>gi|162146088|ref|YP_001600546.1| sensor histidine kinase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784662|emb|CAP54200.1| putative sensor histidine kinase [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 396

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 21/241 (8%)

Query: 558 KNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +NEA+    R   E++  F+  + ++LR+PL +I   T +L          + ++ V +I
Sbjct: 158 ENEAILSHERTQSELREQFIAVLGHDLRNPLMSIESGTRMLL-----RYPERAAELVPHI 212

Query: 614 SASSTILLNLVNDILDLAT--VDAGI---MKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             S+  +  L+ND++D A   +  GI   +K+ ++   L  +L ++ Q + T   E  I 
Sbjct: 213 QKSTARMGALINDLMDFARGRLGGGITLQLKVEHA---LQAILEQIVQEVKTTRPERRIE 269

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +   +    +   D  RL Q+FS +LSNA+        +++KA+ +   F  SV N G 
Sbjct: 270 TRFQMEH---AVTCDTVRLAQLFSNLLSNAVTHGDPDKPIVVKASTNEKFFELSVSNAGK 326

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +  + +F+ F     R  ++G+GLGL IV      H G ++++S ++  T    R+
Sbjct: 327 PIPPEAHEKLFHPFFRGGDRPSQQGLGLGLYIVSEIAKAHRGRLAVTSGNDE-TCFTFRL 385

Query: 789 P 789
           P
Sbjct: 386 P 386


>gi|138894461|ref|YP_001124914.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265974|gb|ABO66169.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 354

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+  ++++  F+ +VS+E+ SPLT+I GF   LK   L     ++  Y++ I      L 
Sbjct: 123 LQAMEDMRQEFISNVSHEIGSPLTSIRGFARALKNENLS--QEQRMHYLDIIETECVRLS 180

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L  ++L LA +D+    L+ ++  L+  L  +      +  E ++ +  + +    S  
Sbjct: 181 KLSENLLRLAMLDSERYPLHPTSYRLDTQLQTLILHCEPQWAEKDVDMCAVMEKV--SIT 238

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD   L Q++  ++ NA+ F+ KG T+ ++  R     I ++ + G  IP+     +F R
Sbjct: 239 ADEDLLSQVWLNLIHNAIKFTPKGGTITVQVQRRGEQAIVTISDTGPGIPKHDQPRIFER 298

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +      G GLGL+I +  +++H G +S+ S      T    +P
Sbjct: 299 FYKVDKSRHRAAGGSGLGLAIAKQIVDMHHGTISVQSEPGEGATFTVELP 348


>gi|325107359|ref|YP_004268427.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967627|gb|ADY58405.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 642

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 113/219 (51%), Gaps = 6/219 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+  +++ELR+PL  I    +LL+ +          + +E +   S  L+ LV
Sbjct: 401 ANQRKDEFLAMLAHELRNPLAPIRTGIELLRIA--ADDPEVLQETIEVMDQQSRQLVTLV 458

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           +D+LD++ +  G + L +  I L D++++   +    + + N    V + D  L     D
Sbjct: 459 DDLLDVSRIARGKIDLRHDLINLADVIDQAVTASRPLLDDANHEFHVELPDCPL-QVQGD 517

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +RL+Q+ S +L+NA  ++ +G  V L    +      ++++ G  IPE M + +F  F 
Sbjct: 518 SRRLVQVVSNLLNNAAKYTPRGGRVDLIVQPEPNRIGIAIRDTGIGIPEHMRERIFELFT 577

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
               R   R  G+G+GL++V + ++LH G + + S  +G
Sbjct: 578 QVDERQHDRYSGLGIGLTLVRTLVHLHNGEIQVHSDGQG 616


>gi|229102504|ref|ZP_04233210.1| hypothetical protein bcere0019_16640 [Bacillus cereus Rock3-28]
 gi|228680894|gb|EEL35065.1| hypothetical protein bcere0019_16640 [Bacillus cereus Rock3-28]
          Length = 268

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 132/250 (52%), Gaps = 13/250 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R  ++L    E  +K+ E+KN  + ++S++LR+P+T++IG+ DLL  +KL S   +
Sbjct: 18  TNVNRLAKSLKGSIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLL-GNKLHSHGEE 76

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  +   S  L N V+D+L+   ++   ++L+ + + +  L+ +V      ++ + 
Sbjct: 77  CEQYVSILKRKSYELKNQVDDLLEYCQINYREIELHKNVVDMKALIEQVMIDFLPQLDDT 136

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           N+   + S+  L   V D   ++++F  I+SN++ +  +G  + ++ ++   +    +KN
Sbjct: 137 NMSFYIKSNEDLYVKV-DVALIVRLFENIISNSIMYGKEGKEISIQISQRERNVEVEIKN 195

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSDE 779
            G  I       VF +F    +RG++       G G+GL+I  S   LH G +++ S+D+
Sbjct: 196 FGQCISTKSLPYVFEKF----YRGEKSRSSHTGGKGMGLAISRSIAQLHKGDITVCSNDK 251

Query: 780 GVTTINCRIP 789
             T    ++P
Sbjct: 252 E-TIFTVKLP 260


>gi|212637309|ref|YP_002313834.1| RscS [Shewanella piezotolerans WP3]
 gi|212558793|gb|ACJ31247.1| RscS [Shewanella piezotolerans WP3]
          Length = 934

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 134/266 (50%), Gaps = 28/266 (10%)

Query: 540 LTFVNVTDS-------VRAERALTEKNE-------ALRKAD---EIKNSFVQHVSYELRS 582
           +T   VTDS       +  ER  T + +       A+ KAD   + K++F+  +S+ELR+
Sbjct: 365 MTISAVTDSDGDISNFIAVERDTTARKQMQDDLAKAVIKADISNKAKSTFLATMSHELRT 424

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G   +++ +     + KQ   ++ +  S   L +L+NDILD + V+ G ++L  
Sbjct: 425 PLNGILGMAQIIEPNLDNPEHRKQ---IQILLESGNHLTSLLNDILDFSKVEQGKLELES 481

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDF 701
                N +L  + ++      E NI++ V ++  +   F  D+ R+ Q+   +LSNA+ F
Sbjct: 482 ELFRFNSVLEPISKTYEPICDEKNIQLIVQNEIDEKQCFKGDKSRIRQVIYNLLSNAVKF 541

Query: 702 SSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + +GS  +L     N +       ++ + G  I  +   S+F+ FV       R+  G G
Sbjct: 542 TEQGSVSLLFKQGVNAEGQQGIEATIIDTGIGIRPERLASIFDPFVQAESSTTRQYGGTG 601

Query: 756 LGLSIVESFINLHGGHVSISSS-DEG 780
           LGLSIV+  + L GG +SI+S  D+G
Sbjct: 602 LGLSIVKQLVELMGGTISITSQVDKG 627


>gi|124266570|ref|YP_001020574.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124259345|gb|ABM94339.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 731

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 124/245 (50%), Gaps = 8/245 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RA R L E  E   +A++ K+ F+ ++S+E+R+PL  ++GF  +    +  S+  +  Q
Sbjct: 320 LRALRLLQEAKEQAVRANDSKSLFLANISHEIRTPLNGVLGFAQI--GYRDPSVVPEARQ 377

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               I  S  +L  ++ND+LD++ ++AG + L+ +  +L   L      +     +  I 
Sbjct: 378 KFARILESGKLLQGILNDVLDMSKIEAGKLLLDPTPTMLRPALERAVDLVRGFARDKGIA 437

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNN 726
           + ++ D ++    V D  RL QI   +LSNA+ F++ G   +      +GD  + +V+++
Sbjct: 438 LCLMVDRRVPEVIVVDPLRLGQILLNLLSNAVKFTASGQVDVTVGV--SGDKLVINVRDS 495

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  + E+    +F  F        RR  G GLGL+I +  + +  G + ++S     +T 
Sbjct: 496 GLGMSEEQISRLFMAFEQADRSTTRRYGGTGLGLAITKRLVEMMNGSIVVTSHLGAGSTF 555

Query: 785 NCRIP 789
           + R+P
Sbjct: 556 SIRLP 560


>gi|119493836|ref|ZP_01624403.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119452428|gb|EAW33617.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 635

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 127/263 (48%), Gaps = 18/263 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +V +    +RA  E  +AL+K  E+   K+ FV  +S+E R+PLT I+  T+ L+     
Sbjct: 359 DVEEITERKRAEAEMRKALQKEKELNLLKSRFVSMISHEFRTPLTTIMASTEALEYYGHR 418

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN----DLLNEV-- 654
               K+ +Y   I  +   L +L+ND+L +   +A  +  N + I L+    +L+ E+  
Sbjct: 419 WTEDKKDKYFSRIRVTIQHLTDLLNDVLIIGQSEAHKLPYNPTVIDLDSFCENLVEEIQI 478

Query: 655 ----KQSIATKMHENNI----RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
               K ++   +H  NI     +    D K+   ++D + L  IF  +LSNA+ +S KG 
Sbjct: 479 TANKKCNLTLSIHGKNILNYLELAASQDSKILP-ISDERLLRHIFINLLSNAVKYSPKGG 537

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            + +K        + ++K+ G  IP +  K +F  F    + G   G GLGL+IV+  ++
Sbjct: 538 KIEMKLFYQATQVVVTIKDEGIGIPVEDQKHLFESFHRARNVGTISGTGLGLAIVKRSVD 597

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
             GG +++ S     T     +P
Sbjct: 598 RLGGTITVHSEVGKGTIFTVALP 620


>gi|27378360|ref|NP_769889.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27351507|dbj|BAC48514.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 897

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 15/250 (6%)

Query: 552 ERALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           + AL E + A R      +A+E K+ F+  VS+ELR+PL  ++G   LL     GSL   
Sbjct: 383 DHALAEHDAAERARSIAVQANETKSRFLAVVSHELRTPLNGVMGVLQLLDD---GSLGEA 439

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +++   +AS   L+ LV+ IL+ A ++A    L      L+ L+      +  +    
Sbjct: 440 QRRHLATAAASGETLIALVDAILEYARLEASAETLEMRDFRLDQLIEAAADLMRPQAFGK 499

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF--- 721
            +   + SD  + + V  D  RL +I   ++ NA+ F+ +G   +  +A  + D I    
Sbjct: 500 GLTFDLASDVTVNTSVHGDPVRLNRILLNLIGNAIKFTPRGGIGLKASAEQHEDHILLSI 559

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V++ G  I  DM + +F  FV       RR  G GLGL+I      L  G +++ S+  
Sbjct: 560 TVRDTGIGIAPDMHERIFEDFVQADDSIARRFGGTGLGLAIARRLTRLMRGELTVESTPG 619

Query: 780 GVTTINCRIP 789
             +T    +P
Sbjct: 620 AGSTFALEVP 629


>gi|262374290|ref|ZP_06067566.1| sensor protein gacS [Acinetobacter junii SH205]
 gi|262310848|gb|EEY91936.1| sensor protein gacS [Acinetobacter junii SH205]
          Length = 936

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 120/226 (53%), Gaps = 9/226 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  SS  LL L+
Sbjct: 285 SNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRKSSAHLLALI 342

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    ++      V D
Sbjct: 343 NDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYAENIPQHVVGD 402

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFI--FSVKNNGSSIPEDMCKSVF 739
             R  QI + ++SNA+ F+  G  ++     D+  G  +  FSV+++G  +     K +F
Sbjct: 403 ALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDEIGQCLLHFSVQDSGIGLSGTDRKKLF 462

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             F        R+  G GLGL+I +  ++L  GH+    + E   T
Sbjct: 463 ESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGHIGFEDNQERAPT 508


>gi|160871635|ref|ZP_02061767.1| sensory box histidine kinase/response regulator [Rickettsiella
           grylli]
 gi|159120434|gb|EDP45772.1| sensory box histidine kinase/response regulator [Rickettsiella
           grylli]
          Length = 563

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 136/262 (51%), Gaps = 22/262 (8%)

Query: 532 PLPNAQ-TMLTFVNV-TDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTN 586
           PL N +  M+  V + TD  + +    +   AL+KA+   + K  F+ +++++LR+PL  
Sbjct: 137 PLRNKKGEMIGVVGISTDITKLKEIQFDLKVALKKAEAANDAKTKFMMNMAHDLRTPLAG 196

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG  ++   +K G+ + +  Q+  +I  +   LL L+N ++D+  ++     LN+  + 
Sbjct: 197 IIGIANI--QAKEGT-HEQDKQHGRWIMEAGNQLLELLNAVMDVMALEEREDALNHDRVE 253

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L+ L+ E+   +   +    +  +   D KL +  +D  +L +I   ++SNA+ F+ KG+
Sbjct: 254 LSHLMKELTDLMQPSIVAKGLHSEWQFDPKLPAITSDVMKLKRILLNLISNAIKFTEKGT 313

Query: 707 TVIL--------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
             +         K AR N      +K+ G  IP D  + +F++F     ++RG   G G+
Sbjct: 314 VGVAIHLLGINDKHARLN----IQIKDTGIGIPSDQHEKIFDQFYRAHPSYRGVYTGYGV 369

Query: 757 GLSIVESFINLHGGHVSISSSD 778
           GL +V+  ++L GG +++SS +
Sbjct: 370 GLYLVKKAVDLLGGKITVSSEE 391


>gi|150025527|ref|YP_001296353.1| two-component system sensor histidine kinase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772068|emb|CAL43544.1| Probable two-component system sensor histidine kinase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 729

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 10/224 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E + KA + +  F+  VS+ELR+PL  I G + +L      +   +Q +Y++ +  S   
Sbjct: 350 ERIEKASKARAEFLSTVSHELRTPLNAINGISHILLDD---NPKPRQIEYLKSLKFSGNH 406

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLG 678
           LL  +N+IL++  +++  +++   +  L +LLN ++ S+  +  +NN   I  I +    
Sbjct: 407 LLTYINEILEINRIESDNIEIENISFNLKELLNNIQNSLKEQARQNNNHFILTIDNDAPE 466

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI--FSVKNNGSSIPEDM 734
             + D  +L QIF  ++SNA+ F+  G+ ++      RD+   +  F VK+NG  IP D 
Sbjct: 467 ILIGDPTKLSQIFINLISNALKFTENGNIIVNARVVNRDDTSCLVKFEVKDNGIGIPTDK 526

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +S+F  F   +    R+  G GLGL+IV+  + L  G + + S
Sbjct: 527 QESIFESFSQGSVEINRKYGGTGLGLTIVKRLLALMNGKIEVHS 570


>gi|238796208|ref|ZP_04639718.1| Aerobic respiration control sensor protein arcB [Yersinia
           mollaretii ATCC 43969]
 gi|238719901|gb|EEQ11707.1| Aerobic respiration control sensor protein arcB [Yersinia
           mollaretii ATCC 43969]
          Length = 777

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +S+Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DSEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      +    ++ 
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLTGLLVQPKGLKF 380

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +  +  L    + D  RL QI   ++ NA+ F+ +G  V+     +N    F V+++G 
Sbjct: 381 TMEPELPLPEKVITDGTRLRQILWNLIGNAVKFTQQGEIVVRVRREENDRLTFEVEDSGM 440

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
            IPED    +F  +  V +++ G+   G G+GL++ +      GG +++ S+
Sbjct: 441 GIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKSA 492


>gi|229056423|ref|ZP_04195836.1| hypothetical protein bcere0026_5500 [Bacillus cereus AH603]
 gi|228720897|gb|EEL72446.1| hypothetical protein bcere0026_5500 [Bacillus cereus AH603]
          Length = 456

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           ++ F+  V++ELR+PLT + G+ D+ LK S   +   ++ +Y+  I   S  + NLV D+
Sbjct: 235 RSEFLASVAHELRTPLTYVRGYADIALKES---TPPEQRLRYLSIIKDESDYITNLVQDL 291

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
             LA ++     +    + L+  L  + + I     E  I+        L     D QR 
Sbjct: 292 FSLAQMEKHNFFIQVQEVHLHPFLTRITEKINVMYGEKQIKAVFTCPSSL-LVKLDEQRF 350

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ + IL+NA   S + S + +    ++      +K+ G  IP +    +F+RF  V  
Sbjct: 351 EQVMANILNNAYRHSKEHSHINISVTEEHKHISIKIKDKGEGIPPEDLPHIFDRFYRVDK 410

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           A      G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 411 ARSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLPS 455


>gi|268590376|ref|ZP_06124597.1| sensor histidine kinase KdpD [Providencia rettgeri DSM 1131]
 gi|291314288|gb|EFE54741.1| sensor histidine kinase KdpD [Providencia rettgeri DSM 1131]
          Length = 895

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 138/264 (52%), Gaps = 8/264 (3%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNII 588
           +P  Q ML TF  +  S  A   LT++ E  +   + ++++NS +  +S++L++PLT + 
Sbjct: 628 IPEQQRMLQTFTGLIASSLARLQLTKQAELAKLNIEREQLRNSLLAALSHDLKTPLTVLF 687

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T++L  + L + NS  ++ V  +         LVN++LD+A + +G ++ N +   L 
Sbjct: 688 GQTEILMLN-LSAENSPLTEQVNQMRQQVLSTSRLVNNLLDMARLQSGSIQPNLAWESLQ 746

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           ++ +   +++   +H + + I + +D  L     D   + ++   +L NA+ +S+  + +
Sbjct: 747 EITSSAVRTLDYTLHSHPLEIDIPADLLL---YCDANLIERVLINLLENAVKYSNNDTPI 803

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            ++AA +       + +  ++IP    K++F++F          GVGLGL+I  + I LH
Sbjct: 804 GIRAAVEGQKIHIEIWDASNAIPNGQEKTIFDKFSRAQKESAIPGVGLGLAICRAIIQLH 863

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
            G +   ++++G  + +  +P K+
Sbjct: 864 EGEIWAQNNNKGGASFHFVLPLKQ 887


>gi|220921256|ref|YP_002496557.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium nodulans ORS 2060]
 gi|219945862|gb|ACL56254.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium nodulans ORS 2060]
          Length = 584

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 20/253 (7%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RA R L  +   LR+A+++K   +  V+++L++PL  I+G  ++L     G L     Q
Sbjct: 333 MRANRRLAMQRSDLRRANQLKTEILGTVAHDLKNPLAVILGRAEML-----GDLIGTLPQ 387

Query: 609 YVEYISA-------SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            VE + A       S+  L  ++  ++  A  DA  + L    +    L  EV Q+ A  
Sbjct: 388 PVEAMRAQVGHIRDSARRLTGMIESLIADAMNDALDITLRREPVDFAALAREVSQANAPL 447

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
               + R++      L  F+  D +RL +    ++SNA+ +S  G+ +++   R+  D +
Sbjct: 448 AETKDQRLRSAIPESL--FICGDGERLREAMDNLISNAIKYSPVGAEIVVTVGREGEDIV 505

Query: 721 FSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SS 776
           ++V++ G  + PED  + +F RF  +S    G     GLGLSIV+    LHGG  +  S+
Sbjct: 506 YAVRDFGPGLSPEDTAR-LFGRFQRLSAKPTGGEGSTGLGLSIVKRIAELHGGRATAESN 564

Query: 777 SDEGVTTINCRIP 789
           + E  +T   R+P
Sbjct: 565 APEPGSTFAIRLP 577


>gi|163739340|ref|ZP_02146751.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161387410|gb|EDQ11768.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 754

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT + + E+ L +   A  +   +K+ F+  +S+E+R+P+  +IG   +L+ ++L   +
Sbjct: 355 DVTAAKQYEQQLKDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTQL---D 411

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y + I  S+  LL+L+ND+LDL+ +DAG + L+     L     +  Q    +  
Sbjct: 412 EEQKLYADTILGSARTLLSLINDVLDLSKMDAGEVILSEVDFDLPACFQQTLQLFEPQAQ 471

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-- 720
           E  I + +     +   +  D +RL Q+   ++ NA+ F+  G   +       GD +  
Sbjct: 472 EKGITLDLNIAPDVPRIINGDDRRLRQVLLNLVGNAVKFTDTGGVGVAVTTSRVGDRLRL 531

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            FSV + G  I ++    +F RF        RR  G GLGL+I        GG + ++S
Sbjct: 532 RFSVTDTGIGIAKEKQDQIFERFSQADAAITRRFGGTGLGLTISRLLCEAMGGEIDVTS 590


>gi|260574258|ref|ZP_05842263.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259023724|gb|EEW27015.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 854

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/472 (20%), Positives = 198/472 (41%), Gaps = 36/472 (7%)

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE--QLNWKTWKEN 377
           A+FD N+ L   NR+++  +E     L    S + +L  L +   L +    N   W   
Sbjct: 100 AVFDTNKKLVTANRAYLASFEGHK--LVPGISYEAILR-LGAETGLVDIGGRNLDDWCAE 156

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           + + +             NG  + ++   +  G  + +  N+T Q+ +            
Sbjct: 157 MLARWDDDPIEPVVLQFANGTWVRLVDHRSRDGDMVCLALNITEQMRIWA---------- 206

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             I+ + +G  +F  + R+   N  +R L+      + PG    +I     RY  E   +
Sbjct: 207 -AIEAIPDGFVLFDREDRLMTCNQRYRDLYPESAEAMVPGASYESIL----RYGLEQGAY 261

Query: 498 DLFAAIITSFDDER------KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                +   +  ER      KS Q   ++     L       P+   +   V+VT +   
Sbjct: 262 ADALGVEEDWLKERLARRRLKSDQFEQQMADGRWLRVIEQETPDGGHVGLRVDVTAAREQ 321

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  L     A   A+  K++F+ ++S+E+R+P+  ++G  +LL  +   +L  +Q  + +
Sbjct: 322 QTLLETARMAAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDT---NLTEEQRLFAD 378

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S   LL ++NDILD + ++A  + L+     L   ++EV   +  +     + + +
Sbjct: 379 TIRSSGEALLVIINDILDYSKIEAERLTLHPEPFDLERTIHEVTMLLQPRARAKGLDLMI 438

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             D  L + ++ D  RL Q+ + ++ NA+ F+  G  ++    ++A   +     +V++ 
Sbjct: 439 DFDMFLPTRYIGDAGRLRQVLTNLMGNAVKFTETGHVLVRVVGIEAEPGSQQLHITVEDT 498

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           G  I  +    +F  F        R+  G GLGL+I +  +   GG V + S
Sbjct: 499 GIGIAPEHLDHIFGEFNQVESETNRKFEGTGLGLAITQRLVERMGGAVWVDS 550


>gi|229164415|ref|ZP_04292344.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
 gi|228619065|gb|EEK75962.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
          Length = 588

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 419

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 420 KLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 477

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V  A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|226315245|ref|YP_002775141.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226098195|dbj|BAH46637.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 717

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E   K++ +K+  + +VS++L++PLT+II +  LLK   L S   ++  YV+ +
Sbjct: 482 GLKHAMEEQMKSERMKSELITNVSHDLKTPLTSIINYVTLLKQEDLTS--EERKSYVDVL 539

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L  L++D+ D A + +G ++LN   + +  LLN+     + K+ ++ +  +V +
Sbjct: 540 DRKADRLRVLIDDLFDAAKMSSGAVELNIEQVNVASLLNQSIAEFSDKIDQSTLTFRVTT 599

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +        D ++  ++F  ++ NA+ +S   + V++  A    + I + KN  +   + 
Sbjct: 600 EQPKIVAPLDGKKTWRVFENLIGNALKYSMPNTRVLIHLAETEDEVILTFKNVSAYEIDF 659

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             + +F RF          G GLGL+I +S + L GG +SI
Sbjct: 660 DAQELFERFKRADQSRHTEGSGLGLAIAKSIVELQGGRLSI 700


>gi|210608614|ref|ZP_03287931.1| hypothetical protein CLONEX_00110 [Clostridium nexile DSM 1787]
 gi|210152969|gb|EEA83975.1| hypothetical protein CLONEX_00110 [Clostridium nexile DSM 1787]
          Length = 264

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + ++ KN  V ++++++R+PLT+I+G+ +LL   K     ++Q +Y+      +  L  L
Sbjct: 28  RTEQRKNDLVGYLAHDIRTPLTSIVGYLELLNDMKQME-RTQQEKYLRITYDKAKRLEKL 86

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N++ D++ ++   + L    + L  +L ++       + +    +K+  D K+  +  +
Sbjct: 87  INELFDISKLNMQTVALKKEQVNLTFMLYQMADEFYPMLEQKGQSMKMEIDEKILIY-GE 145

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             +L ++F  IL NA+ +   GS + ++AA+   + + +  N G+ IP+   + +F +F 
Sbjct: 146 ADKLARVFGNILKNAIAYGDAGSEITVQAAKGVENVVVTFVNRGAEIPKHQLEHIFEKFY 205

Query: 744 -SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            S++ R    G  GLGL+I +  + LHGG +   S+ E    I  ++P
Sbjct: 206 RSDSARSTDTGNAGLGLAIAKEIVTLHGGEIWAVSNKEDTKFI-VKLP 252


>gi|239907548|ref|YP_002954289.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797414|dbj|BAH76403.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 867

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 123/239 (51%), Gaps = 15/239 (6%)

Query: 547 DSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           D VR E  +  +K EA   A   K+ F+ ++S+E+R+PL  I+G   LL+T+   +++ +
Sbjct: 472 DVVRKELISAKDKAEASSMA---KSEFLANMSHEIRTPLNGILGMLQLLETT---TISDE 525

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +Y+     SS  L  L++DILDL+ +++    ++     + +++  V ++ +  + EN
Sbjct: 526 QKEYLLGAIKSSKRLTRLLSDILDLSKIESKRTTIDQVEFDIEEVVRSVSEAFSISIKEN 585

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDF 719
            +  + + D  +    + D  R+ QI   I+ NA+ F+  G      +++      +   
Sbjct: 586 GLSFRTVLDNNIPRRLIGDETRMRQILFNIVGNAIKFTPTGKIEVELSLLSHHTNKSCRV 645

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + SV + G  IP D  K +   F  V  ++   ++G GLGL+IV   + L GG++ I S
Sbjct: 646 LVSVADTGIGIPADRLKDILEPFTQVDGSYIRSKQGAGLGLAIVRKLVALLGGNICIDS 704


>gi|184154492|ref|YP_001842832.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
 gi|183225836|dbj|BAG26352.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
          Length = 619

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 119/239 (49%), Gaps = 16/239 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K +  +  FV +VS+ELR+PLT++  + + L     G++N  +  S+++  +S  +  +
Sbjct: 371 QKEERERKEFVSNVSHELRTPLTSVKSYVEALSD---GAINDPELASRFLGVVSDETERM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------KQSIATKMHENNIRIKVI 672
           + ++ND+L L+ +D+G  KLN   + +N+L N +        K   A    +    ++  
Sbjct: 428 IRMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYF 487

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L   + D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP 
Sbjct: 488 TKKDLWVEI-DTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPR 546

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F+RF  V  A   ++ G GLGL+I +  +NL GG + + S +   +T    +P
Sbjct: 547 KDLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|119486822|ref|ZP_01620797.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119456115|gb|EAW37248.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 810

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 122/255 (47%), Gaps = 11/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  +AE  L   N  L +++     F    S++L+ PL  +  F+ LL      +L
Sbjct: 558 IDITERKQAEELLFTLNRELLQSNRELEQFAYVASHDLQEPLRIVSLFSQLLARKYQDNL 617

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +   Y+ YI  ++T +  L+ D+L  + V       N+  +  N +L +  Q++   +
Sbjct: 618 DEETQTYIYYIVDAATRMQQLIKDLLAYSQVGTSKSTANFERVDCNQVLQQALQNLQVAI 677

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDN----- 716
            + N    +I+  +L + +AD Q+L+ ++  ++ NA+ +   + S  I    R N     
Sbjct: 678 TKQN---AIINSNQLPTVIADPQQLVILWQNLIGNAIKYCHPEVSPYIEIGIRPNLIDES 734

Query: 717 --GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              ++ FSV++NG  I  +  + +F  F    H  +  G G+GL+I +  +  HGG + +
Sbjct: 735 QTQEWCFSVRDNGIGINSEYFERIFKIFQRLHHSQEYPGTGIGLAICQKIVERHGGRIWV 794

Query: 775 SSSDEGVTTINCRIP 789
            S +   +T    +P
Sbjct: 795 KSEENQGSTFYFTLP 809


>gi|116670333|ref|YP_831266.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
 gi|116610442|gb|ABK03166.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
          Length = 587

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 23/257 (8%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A ++L F +VTD V A                +K+ FV ++S+E R+PL +I+G+ DL+ 
Sbjct: 326 AGSVLAFGDVTDLVNAL--------------ALKDDFVANISHEFRTPLMSILGYLDLVL 371

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +      +   ++     ++  LLNLV+ +L   TV +  M ++   + L DL+   K
Sbjct: 372 DGE-EETAGQHELFLGMAQNNAEKLLNLVSGLL---TVSSDSMGVHPQRMDLGDLVR--K 425

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++ K   +   + ++++     ++ AD +RL Q+   +L+NA+ +S  G  V ++A  
Sbjct: 426 CVVSAKPRADGRWVTIVNEVSRAFWITADPERLAQVLDNLLTNAIKYSQPGDVVTVRAWE 485

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            N    FSV + G  I E     +F R+   S        GVGLGL IV+  +  HGG  
Sbjct: 486 TNDQACFSVTDTGMGISEQDLPHIFTRYYRSSRVRESAMPGVGLGLGIVKRIVENHGGSA 545

Query: 773 SISSSDEGVTTINCRIP 789
           +++S  +  +T    +P
Sbjct: 546 TVTSKPDLGSTFTVSLP 562


>gi|329132032|gb|AEB77977.1| GacS [Pseudomonas sp. Q12-87]
 gi|329132034|gb|AEB77978.1| GacS [Pseudomonas sp. Q13-87]
 gi|329132036|gb|AEB77979.1| GacS [Pseudomonas sp. Q7-87]
 gi|329132038|gb|AEB77980.1| GacS [Pseudomonas sp. Q86-87]
          Length = 203

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSSQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|294646778|ref|ZP_06724401.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807691|ref|ZP_06766484.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292637938|gb|EFF56333.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445127|gb|EFG13801.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 623

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 11/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++     
Sbjct: 378 DITELKRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENA--- 434

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++  Y   I  ++ +LLNL+ND++DL+ +++G ++L    + L +LL+E   S+A   H
Sbjct: 435 AEKELYNSLIGHNNKLLLNLINDVIDLSKIESGYLELRPDWVNLTELLDE---SVAEYAH 491

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++++++      +   DR R+ QI S  LSNA+  ++ G   I     D+     
Sbjct: 492 QVPSGVELLTNYPAHDSLVELDRLRIKQILSNFLSNALKNTTTGHVEIFYEV-DHQSVRI 550

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  IP++M + +F RF       Q  G GLGL I +  +    G + + S     
Sbjct: 551 GVKDTGRGIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIG 608

Query: 782 TTINCRIPSK 791
           TT    +P +
Sbjct: 609 TTFIIELPCR 618


>gi|288957220|ref|YP_003447561.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909528|dbj|BAI71017.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 434

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 7/236 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVE 611
           R L E  +   +A   K +F+ ++S+E+R+PLT ++GF +LL+   LG        +Y  
Sbjct: 187 RQLEEARQKAERAIRAKTAFLANMSHEIRTPLTAMMGFAELLEQEVLGPHAIPLYREYAR 246

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ S   L+ L+ND+LDL+  DA  ++L   T+ +  +     + +A +   + +RI  
Sbjct: 247 DIAESGRHLMELINDLLDLSKADADRLELVEGTVDVVRVAIGAARLLAERAARHGVRIAT 306

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSI 730
                L    AD ++L Q+   +LSN + F+     V L A    +G    SV + G  +
Sbjct: 307 TVPLDLPPLRADERKLRQMLLNLLSNGVKFTPADGVVTLGAHMAADGALWLSVHDTGIGM 366

Query: 731 P-EDMCKSV--FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
             E++ K++  + +  S   R Q  G GLGL + +  I LHGG + I S  D+G T
Sbjct: 367 TGEELAKALEPWGQIDSALARVQ-VGSGLGLPLTKRLIELHGGRLDIVSRCDDGTT 421


>gi|256963907|ref|ZP_05568078.1| VanSG [Enterococcus faecalis HIP11704]
 gi|307272097|ref|ZP_07553360.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0855]
 gi|256954403|gb|EEU71035.1| VanSG [Enterococcus faecalis HIP11704]
 gi|306511213|gb|EFM80220.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0855]
          Length = 370

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 133/255 (52%), Gaps = 8/255 (3%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+  +  ++ F    + +R E  L  + +  ++A++ KN  + +++++L++PLT++IG+ 
Sbjct: 112 PIALSANLMEFDKELNQIRQEVNL--RQQQAKEAEQRKNDLIVYLAHDLKTPLTSVIGYL 169

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL   +L      + +Y+      +  L  L+N+  ++A  +   ++L  +++ L+ +L
Sbjct: 170 TLLH-DELEISTQLREKYLAISLEKAEHLEELINEFFEIARFNLSNIELEPTSVRLDRML 228

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           N+V       + +  + I+      L S   D  ++ ++F  ++ NA+++S  G+T+ L 
Sbjct: 229 NQVSYEFLPMLKQKQLTIETDFTEPL-SIHLDVDKMQRVFDNLVQNAINYSYAGTTISLS 287

Query: 712 AARDNGDFIFSV--KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
              DN +   ++   N+G ++P +    +F +F  +  A +  R G GLGL++ +  + L
Sbjct: 288 TKVDNENQRVNIYFTNHGPTVPPEKLARIFEQFFRLDTARQTNRGGAGLGLAVAKKIVEL 347

Query: 768 HGGHVSISSSDEGVT 782
           HGG +S  S +E  T
Sbjct: 348 HGGVLSAESENEKTT 362


>gi|240171860|ref|ZP_04750519.1| response regulator TutC [Mycobacterium kansasii ATCC 12478]
          Length = 796

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 15/259 (5%)

Query: 542 FVNVTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           F    +     R L E N  L       ++ D++K+ F  +VS+ELR+PL  I+     L
Sbjct: 160 FARAYEVAETSRKLKEANAELADLYARAKELDDLKSQFFANVSHELRTPLMLILEPARRL 219

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S   +  S+    +E I  ++ +L   VN++LD A ++AG ++ NY+ + + + L   
Sbjct: 220 LESTEPAEPSRGD--LELIVRNARLLQRHVNNLLDAARLEAGAVQPNYAHVDVAEHLRLG 277

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                +   + +I   V +D  + + + D + L QI   +LSNA  F+    TV    + 
Sbjct: 278 AALFESLAVDRDIEFSVNADQPVTAEL-DPEHLHQILVNLLSNAFKFTRPSGTVRCSVST 336

Query: 715 D-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770
           D +   I  V ++G  IP +   +VF RF      G  R   G GLGLSIV   + LH G
Sbjct: 337 DPDHRVIIEVADSGPGIPHEQRAAVFERF-HQVEGGPTRAVGGTGLGLSIVRDLVGLHRG 395

Query: 771 HVSISSSDEGVTTINCRIP 789
            V+IS + EG   +   +P
Sbjct: 396 SVTISEAREGGALVIVDLP 414


>gi|189464362|ref|ZP_03013147.1| hypothetical protein BACINT_00703 [Bacteroides intestinalis DSM
           17393]
 gi|189438152|gb|EDV07137.1| hypothetical protein BACINT_00703 [Bacteroides intestinalis DSM
           17393]
          Length = 649

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 131/270 (48%), Gaps = 46/270 (17%)

Query: 551 AERALTEKN-------EALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +++ L+EKN       E L+ A E       +K+ F+Q++S+E+R+PL +I+GF+ +L  
Sbjct: 398 SQKRLSEKNNELLCSQEELKYAKEQAEDGSRMKSEFIQNMSHEIRTPLNSIVGFSQIL-- 455

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S   S N    +Y   I  +ST LL LVND+LDL+ +D G  ++   +I       E+  
Sbjct: 456 SSYFSDNDDTKEYAHIIEQNSTSLLQLVNDVLDLSYLD-GEREIPAQSIA------EITG 508

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQ---------RLLQIFSKILSNAMDFSSKGST 707
              T +  + +R K+  D +L  F  +R+         R+ QI   +L NA  F+ +GS 
Sbjct: 509 VCQTCI--DQVRSKLKPDVQL-IFTPERENFTMQTNPDRISQILMNLLQNAAKFTQEGSV 565

Query: 708 VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            +    R+    I FSV + G  IP D  ++VF RF          G GLGLSI      
Sbjct: 566 TLTYHIREEEKVILFSVTDTGIGIPADKQEAVFERFTK--LDSFVPGTGLGLSISRLIAE 623

Query: 767 LHGGHVSISSSDEGVTTINCR----IPSKE 792
             GG + I S+     T  CR    +P KE
Sbjct: 624 KMGGSLLIDST----YTTGCRFILTLPLKE 649


>gi|312961453|ref|ZP_07775956.1| two-component hybrid sensor and regulator [Pseudomonas fluorescens
            WH6]
 gi|311284348|gb|EFQ62926.1| two-component hybrid sensor and regulator [Pseudomonas fluorescens
            WH6]
          Length = 1381

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 128/266 (48%), Gaps = 14/266 (5%)

Query: 538  TMLTFVNVTDSVRAERALT-------EKNEALRKAD---EIKNSFVQHVSYELRSPLTNI 587
            T+L   ++   V+  R LT       E+++ LR+      +K+ F   +S+EL+ PL  I
Sbjct: 971  TLLKSASLQGYVKIARDLTGHKRTQDEQSQRLRETQTNSHLKDEFFAVMSHELKHPLNLI 1030

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
                +LL+        +   + VE I  + +    +++D+LD+A V  G +KL    + L
Sbjct: 1031 QLNAELLRRLPATKTAAPAVRAVETICEAVSSQARIIDDLLDVARVRTGKLKLKKQPVDL 1090

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
               L ++   +    H   + ++  S+       AD  R+ Q+   +++NA+ F+ +   
Sbjct: 1091 IRTLQDIHSVVLADGHHRQVTLQTPSEPGALIVDADPTRIEQVIWNLVNNALKFTPQDGQ 1150

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG-QRRGVGLGLSIVESF 764
            V L  +R NG     V ++G+ + +D  + +F+ F    N H+  QR G+G+GLS+V   
Sbjct: 1151 VQLVLSRSNGHAQLDVIDSGAGLADDSLEKIFDLFGQAENQHQTHQREGLGIGLSLVRQL 1210

Query: 765  INLHGGHVSISSSDEGV-TTINCRIP 789
            +  H G VS+ S   G   T + R+P
Sbjct: 1211 VEAHDGLVSVHSKGLGFGCTFSIRLP 1236


>gi|294775610|ref|ZP_06741119.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|294450552|gb|EFG19043.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 855

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 126/251 (50%), Gaps = 10/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D  R+     E  +A R+A+++   +   +  +++++++P+ +I+G+TDLL+     +  
Sbjct: 313 DITRSNHYRRELEKAKRRAEDLLAAREKLMLTITHDIKAPVGSILGYTDLLERI---TTE 369

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+  + +S+  LL+LV  +LD   +DA  M +N  +   + L + +  S      
Sbjct: 370 ERQRFYLNNMQSSANHLLSLVKSLLDYHRLDAHKMDVNQVSFNPHQLFDTIYISFKPMAD 429

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + +    +  L   ++ D  R+ QI   +LSNA+ F+ +G  + L+AA +NG   FS
Sbjct: 430 SKQLELNYHCNESLNRVYIGDPFRIRQIAENLLSNALKFTREGG-ITLRAALENGQLHFS 488

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + + G  I ++  + +F  F +  H  Q + G GLGL+I    + L  G + I S  +  
Sbjct: 489 ISDTGCGISQEEQQRIFQEF-TRLHNAQGQEGFGLGLAITRKLVLLLEGDIKIESEQDKG 547

Query: 782 TTINCRIPSKE 792
           +  +  +P  E
Sbjct: 548 SCFHVYLPLPE 558


>gi|289667389|ref|ZP_06488464.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            campestris pv. musacearum NCPPB4381]
          Length = 1132

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 17/239 (7%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQL 906

Query: 668  RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSV 723
                  D  L   +  D  R+ QI   +L NA+ F+ +GS  +  AA            V
Sbjct: 907  AFHCALDDALPPALHGDASRVQQILLNLLFNAIKFTERGSVHLRVAALPEHTQQGIRVEV 966

Query: 724  KNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V++ S
Sbjct: 967  RDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGSVTVIS 1022


>gi|206889651|ref|YP_002248593.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741589|gb|ACI20646.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 457

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           ++L +A   +  FV   S+ELR+PL+ I+  +++    +  +   K +     I  ++ I
Sbjct: 221 DSLERAFNRQKQFVSDASHELRTPLSVILSHSEITLRRERSTEEYKNALIA--IKDAAKI 278

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +LN++  +L LA + +   +L +  I L  +L +V + +     + +I+I +    +L +
Sbjct: 279 MLNMIERLLMLARLSSDRAELKFEEINLYSILKDVVKLLNPLAEQKDIKISIHGYEQLTT 338

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPEDMCKSV 738
           F  DR  LL++F+ ++ NA+ ++ +   V +   ++N D+ +  VK+ G  +PE+    V
Sbjct: 339 F-GDRASLLELFTNVVDNAIKYNIQQGKVDI-YIKENQDYALIEVKDTGVGMPEEDLDKV 396

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783
           F+RF  +  A  G  +G GLGLSI +  + LHGG + I S   EG T 
Sbjct: 397 FDRFYRIDKARSGGIKGAGLGLSICKEIVRLHGGKMEIKSRIGEGTTV 444


>gi|188590516|ref|YP_001920345.1| two-component sensor kinase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500797|gb|ACD53933.1| two-component sensor kinase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 719

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 12/235 (5%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQS--QYVEYISASSTILLNL 623
           +K +F  +VS+E R+PL  I+    L+  K S       K+   QY+  I  +S  LL L
Sbjct: 456 LKTTFFANVSHEFRTPLNIILTAIQLISIKLSNCPCSEDKEKIFQYIRGIKQNSYRLLKL 515

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-- 681
           VN++LDL  +D G  +L      + +L+ E+  S+A   H  + + ++I D      +  
Sbjct: 516 VNNLLDLTKIDGGYYELKSIKCNIVNLIEEIVLSVAD--HIGSKKREIIFDTTEEEILTS 573

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVF 739
            D +++  I   +LSNA+ F+ +  ++ +    D+   + + SV+N+GS I ++  K +F
Sbjct: 574 CDPEKIETILLNLLSNAVKFTKENDSIEVNLNVDSYYKNVVISVRNSGSKIDKEDAKIIF 633

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           NRF    +   RR  G G+GL++V+S ++LHGG + +++  E    I   IP KE
Sbjct: 634 NRFTQLDNLLNRRCEGSGIGLALVKSLVDLHGGDIWVNTLFEDGAEIIFTIPIKE 688


>gi|4210924|gb|AAD12777.1| ethylene receptor homolog [Solanum tuberosum]
          Length = 635

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 128/268 (47%), Gaps = 36/268 (13%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           DS+RA   L E+N AL  A +        +N F+  +++E+R+P+  +I    LL  +  
Sbjct: 314 DSMRAHDQLMEQNNALDDARQEAEMAIRARNDFLAVMNHEMRTPMHAVIALCSLLLET-- 371

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E I  SS +L  L+ND+LDL+ ++ GI++L   T  L+ +L E    I 
Sbjct: 372 -DLTPEQRVMIETILKSSNLLATLINDVLDLSRLEDGILELENGTFNLHGILREAVNLIK 430

Query: 660 --TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILK 711
               + + +I + +  D  + + V D +RL+QI   +  NA+ F+ +G      S    +
Sbjct: 431 PIASLKKLSITLALALDLPILA-VGDAKRLIQILLNVAGNAVKFTKEGHISIEASVAKPE 489

Query: 712 AARD-----------NGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
            ARD           +G F     V++ G  I P+D+   VF +F        R   G G
Sbjct: 490 YARDCHPPEMFPMPSDGQFYLRVQVRDTGCGISPQDI-PLVFTKFAEARPTSNRSTGGEG 548

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTT 783
           LGL+I   FI L  G++ I S   G  T
Sbjct: 549 LGLAICRRFIQLMKGNIWIESEGSGKGT 576


>gi|4092526|gb|AAC99435.1| putative ethylene receptor [Citrus sinensis]
          Length = 634

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 123/267 (46%), Gaps = 33/267 (12%)

Query: 547 DSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           DS+RA   L  +N AL        KA   +N F   +++E+R+ +  II  + LL  +  
Sbjct: 315 DSMRARNQLMGQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-- 372

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E +  SS +L  LV+D+LDL+ ++ G ++L+     L  +L EV + I 
Sbjct: 373 -DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIK 431

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILK------- 711
                  + + +I   +L ++ V D +RL+Q    I+ NA+ F+ +G   I+        
Sbjct: 432 PVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIAFVAKPES 491

Query: 712 ----------AARDNGDFIFSVKNN--GSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGL 758
                         +G F   V+ N  G  +P      +F +F  S     Q    GLGL
Sbjct: 492 LSDWRPPKFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLIFTKFAQSRGSSCQTPRAGLGL 551

Query: 759 SIVESFINLHGGHVSISSS--DEGVTT 783
           +I   F+NL GGH+ + S   D+G T 
Sbjct: 552 AICRRFVNLMGGHIWLESEGLDKGSTV 578


>gi|152975590|ref|YP_001375107.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024342|gb|ABS22112.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 384

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 3/225 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I      
Sbjct: 152 EEERQTEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVHR 210

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ND+ +   V    + L    I + +LL ++      ++ E NI+ +     +   
Sbjct: 211 LNTLMNDLFEYTRVQNKELSLRSVPIDMIELLGQLTVQFRIQLQEANIKCRPSYPSQKLM 270

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD  +L+++F  ++ NA+ + S G  + + A  +       V N G  IP      +F
Sbjct: 271 VLADGDKLVRVFENLIINAITYGSDGKYIDITAYEEGNLVAIDVTNYGQPIPSTDLPHIF 330

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            RF  V  +      G GLGL+I +S + LH G + + S +E  T
Sbjct: 331 ERFYRVEKSRSAYTGGSGLGLAIAKSIVELHNGTIEVYSDEEKTT 375


>gi|330995065|ref|ZP_08318982.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|332879513|ref|ZP_08447208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|329576641|gb|EGG58144.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|332682479|gb|EGJ55381.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 491

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 122/233 (52%), Gaps = 2/233 (0%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VT   R +  + +     ++ D  K +F+  VS+EL++P++ I+    LL+  ++G LN 
Sbjct: 246 VTMEKRGDVIMLKNVTEFQELDTAKTTFISTVSHELKTPISAIMMSLQLLEDKRVGGLNP 305

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +    I  +S  LL++  ++L++  V++G ++L        +L++   ++   +  +
Sbjct: 306 EQEELSRSIKENSERLLSITGELLNMTQVESGKLQLKPKITKPIELIDYAIKANRVQAEK 365

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSV 723
             I+++V    K+G    D +++  + + +LSNA+ +SS+   V++ A  +D+      V
Sbjct: 366 FGIQVEVDYPEKIGKLFVDSEKIAWVLTNLLSNAVRYSSEAGRVVIGARQQDDNHIAMFV 425

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           ++ G  I     +S+F  +       + +G GLGLSI   F+  HGG +++ S
Sbjct: 426 QDFGKGIDPRYHESIFEHYF-RVPGTKVQGTGLGLSISRDFVEAHGGTLTVDS 477


>gi|327541400|gb|EGF27939.1| multi-sensor signal transduction histidine kinase [Rhodopirellula
           baltica WH47]
          Length = 649

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 133/276 (48%), Gaps = 11/276 (3%)

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAER 553
           D + L  +  T F+ E K   GT   +S   L  + I + N + T+ TF ++T+  +   
Sbjct: 348 DRFSLNQSANTQFEFETKRADGTTMRIS---LVTATIEIENQSMTLATFTDITERHQVAM 404

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  K E L +++E  + F    S++L++PL  I+  T+ ++      +  +  ++++ +
Sbjct: 405 DLERKQEELERSNEDLDRFAYIASHDLKAPLRGIMHLTEWIEEDMPPQIGQEVREHLKML 464

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A  + +  L+ND+L  A V      + +  + LN  L E+   ++         +K++ 
Sbjct: 465 QAQVSRMDMLLNDLLAYARVTRQTDAVEW--VDLNTALPELFAFMSPP-----PTMKLVM 517

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             K+ S    R  L QIF  +  N++  ++  S VI+ A   +  + F+V++NG  IPE 
Sbjct: 518 PAKMPSLSTARGPLEQIFRNLFGNSIKHAAGSSQVIVTAETTSDSYHFTVRDNGPGIPES 577

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
             + +F  F +      RRG G+GL +V+  + + G
Sbjct: 578 SQERIFGMFQTLESGKDRRGTGMGLHLVKRLVQVQG 613


>gi|306821071|ref|ZP_07454689.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550907|gb|EFM38880.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 598

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 128/234 (54%), Gaps = 13/234 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           R+ +E++  FV +VS+EL++P+T+I  +T+ L     G+++ K +   ++  I+  S  +
Sbjct: 370 RRLEELRRDFVANVSHELKTPITSIKSYTETLLD---GAIDDKDTATSFLTVINNESDRM 426

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIATKMHENNIRIKVISDGKLG 678
            N++ D+L L+ +D      + +   +N L  +  +K ++   M    I +  IS+ KL 
Sbjct: 427 NNIIKDLLQLSHMDYKKESWDLALTDINALTKDCILKMTLYADMKNQKI-VGEISNDKL- 484

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             + D+ +  Q+   ++SNA+ +++   T+I+K   ++G    SV ++G  IPE     +
Sbjct: 485 PVIIDKSKFEQVIINLVSNAIKYTNDNGTIIVKTFVNDGKCHISVTDDGIGIPEKDLPFI 544

Query: 739 FNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF     +G+ R   G GLGLSI ES I  HGG +S++S+    +T    IP
Sbjct: 545 FDRFYR-VDKGRSRSLGGTGLGLSICESIIAEHGGTISVTSTFGEGSTFTVIIP 597


>gi|256839354|ref|ZP_05544863.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738284|gb|EEU51609.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 415

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 133/249 (53%), Gaps = 15/249 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ D  + E+ L      L +  E K  F+ ++S+E+R+PL +I+GF++LL + K   L
Sbjct: 175 ININDMKKREKELI-----LMRGYEQK--FLANMSHEIRTPLNSIVGFSNLLASEK--DL 225

Query: 603 NSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +    Q + + I+ S  +LL L+NDIL+++ + +G MK    +  + +L++++  +    
Sbjct: 226 DEADKQLFAKTINQSCDLLLVLINDILEVSRLQSGQMKFEKESCSVKELVDDLYLA-HQL 284

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
           +   ++R    ++G L  +  D++RL Q+ +  L+NA  F++ G   +  K  R   +  
Sbjct: 285 LVPTHLRFSKEAEGDLFIY-TDKKRLSQVITNFLTNACKFTNSGYIKLGFKHLRGTDEAA 343

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             V+++G  + E+  + VF+RF       Q  G GLGLSI +  +   GG +++SS    
Sbjct: 344 IFVEDSGIGLSEEEQEKVFSRFFKQDEFSQ--GAGLGLSICQGIVQNLGGRIALSSKQGE 401

Query: 781 VTTINCRIP 789
            +  +  +P
Sbjct: 402 GSRFSVVLP 410


>gi|239943793|ref|ZP_04695730.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239990246|ref|ZP_04710910.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 509

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   +L +K   +   +E    FV  +S+ELR+PLT I    ++L+  +  +L+   +  
Sbjct: 255 RTASSLEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLE-DEADTLDPMIAPA 313

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  + + +  L +LV +++++   DAG  +L    +   D+ ++V   I  +   + + +
Sbjct: 314 VHLVVSETRRLNDLVENLMEVTRFDAGTARLVLDDV---DVADQVTACIDARAWLDAVHL 370

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               D + G     D +RL  I + ++ NA+     GS V ++   +  + +  V+++G 
Sbjct: 371 ----DAERGMMARLDPRRLDVILANLIGNALKHG--GSPVGVRVRTEGEELVIEVRDHGP 424

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPE++   VF+RF  ++A R +  G GLGLSI     ++HGG +S ++S +G      R
Sbjct: 425 GIPEEVLPHVFDRFYKASASRPRSEGSGLGLSIAVENAHIHGGDISAANSPDGGAVFTLR 484

Query: 788 IP 789
           +P
Sbjct: 485 LP 486


>gi|160934058|ref|ZP_02081445.1| hypothetical protein CLOLEP_02921 [Clostridium leptum DSM 753]
 gi|156866731|gb|EDO60103.1| hypothetical protein CLOLEP_02921 [Clostridium leptum DSM 753]
          Length = 660

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 142/290 (48%), Gaps = 18/290 (6%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-------K 564
           K  + T+E + + V + S++   + +  LT    +D     + L E  E          K
Sbjct: 376 KRFRKTVEEMGEVVDQVSVMKAGDMEAKLTLPADSDLYATAQDLNEIQEGFSVALEERMK 435

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           ++ +K   + +VS+++++PLT+IIG+ +LL+  +    + K   Y++ +S  S  L  +V
Sbjct: 436 SERMKIELITNVSHDIKTPLTSIIGYVELLEKEEELPEHVKD--YIKILSKKSQRLKTMV 493

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN----NIRIKVISDGKLGSF 680
            DI D++   +G MKL+   +   DL+  ++Q++A  M E+    N+  K+         
Sbjct: 494 QDIFDVSKASSGEMKLDIEEL---DLVKLIRQTLA-DMDEDISGSNLIFKINLPNDPVMI 549

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +RL ++F  ++ N++ +S +GS V +   RD+      +KN        + +++  
Sbjct: 550 RGDGERLYRVFQNVIKNSLQYSLEGSRVYISLYRDDSWTTVMIKNTSKYELGGLGENITQ 609

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RFV         G GLGLSI ESF    GG+  + ++D  + T+    PS
Sbjct: 610 RFVRGDASRSTEGSGLGLSIAESFTEACGGNFRV-TTDADLFTVEIAFPS 658


>gi|57234869|ref|YP_181049.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57225317|gb|AAW40374.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 426

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 125/242 (51%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKA--DEIKN--SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           A  E  + LRK    E+K+   F + V ++L++PLT+II  + +L      + + K    
Sbjct: 180 ASYENEKKLRKCIQTEMKSRLEFTRIVVHDLKTPLTSIISSSGVLSNI---AADGKYKAL 236

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIR 668
              I  S+  L   ++++LD+A  +    KLN S   + ++L+ +  SI   M+  N+I 
Sbjct: 237 AANIYESTMNLNTRLDELLDMAQCEVRDPKLNRSRFNIKEMLDHI-ISIQHGMYNTNHID 295

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            K+I   ++   +AD  RL QI   ++ NA+ +S     + +  +RD  + +FSV ++G 
Sbjct: 296 FKIIIAPEVSFIIADEDRLRQILDNLIDNAIKYSPDSGLISINISRDQNNVLFSVSDSGI 355

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I     K++F  +     R ++ +G+GLGLSIV +++ LHGG + + S     TT    
Sbjct: 356 GIEPGEIKNIFKPYYRVESRQKKLQGLGLGLSIVRTYVKLHGGRIWVESEYGKGTTFLFT 415

Query: 788 IP 789
           IP
Sbjct: 416 IP 417


>gi|89096574|ref|ZP_01169466.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89088589|gb|EAR67698.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 453

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 6/220 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PLT + G+T +    + G  +S++ +Y+E I   S  L NL++++  LA
Sbjct: 237 FLASISHELRTPLTYMQGYTAI--ALREGLPDSERREYLEIIQDESAKLGNLIDNLFQLA 294

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +D     +    I L  +L E+   +    +  NI ++      L +  AD  R  QI 
Sbjct: 295 KIDQTNFTIQKQEIDLCRILGELTAKVKPAFNGKNIELQTCCKEGL-TLSADPLRFEQII 353

Query: 692 SKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
             +L NA+ +S + +   + A +   G     +++ G  IP+   K VF+R   V  +  
Sbjct: 354 YNLLDNALKYSDEHTKTAVHAEQTAKGTVKILIEDQGKGIPQADLKYVFDRLYRVDKSRS 413

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  G GLGLSIV+  +  HGG + ISS +   T +   I
Sbjct: 414 RENGGSGLGLSIVKELVEAHGGTIHISSQETKGTIVEIEI 453


>gi|313200497|ref|YP_004039155.1| histidine kinase [Methylovorus sp. MP688]
 gi|312439813|gb|ADQ83919.1| histidine kinase [Methylovorus sp. MP688]
          Length = 1136

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 8/258 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    + +  L +  +   +A++ K+ ++  +S+ELR+PL +I+G+  LL
Sbjct: 647 NRQTGLLLREIELHRQTDAELQQARQVAEQANQAKSRYITGISHELRTPLNSILGYAQLL 706

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 S+ + +   +  I  S   LL+L+   LD+A +++G +  +   + L + + +V
Sbjct: 707 DNDV--SIPAARQPAIRVIRRSGEHLLSLIEGTLDIARIESGKLTFDIKPLRLPEFIQQV 764

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712
                 +     +       G L   V AD++RL QI   IL NA+ F+ +G  V  L+ 
Sbjct: 765 VDMFELQARNKGLTFSYQLTGDLPDMVRADQKRLSQILINILGNAVKFTRQGGVVFRLRY 824

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGG 770
           AR+    +  +++ G  I ++    +F  F   S A+     G GLGL+I +    L GG
Sbjct: 825 ARELA--VIEIEDTGPGILKEELDEIFEPFARGSAANNSTVAGTGLGLTISKMLTQLMGG 882

Query: 771 HVSISSSDEGVTTINCRI 788
            +S+ S     T    R+
Sbjct: 883 ELSVRSVVGSGTVFQIRL 900


>gi|228995904|ref|ZP_04155562.1| hypothetical protein bmyco0003_5000 [Bacillus mycoides Rock3-17]
 gi|228763876|gb|EEM12765.1| hypothetical protein bmyco0003_5000 [Bacillus mycoides Rock3-17]
          Length = 361

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 3/232 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R + E +  FV   S+ELR+PL  I   TD+L  S   ++  K    +  IS     L 
Sbjct: 130 IRNSWEKQQQFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAID-ISTISKECRRLS 188

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV ++L LA  D+  +++      L++LL EV             ++ +  + K+ SF+
Sbjct: 189 KLVANLLLLARSDSNQIEMYKKEFALDELLTEVVDPYTEIAAYQEKKMTLEIESKV-SFI 247

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR+R+ Q+   +L NAM ++  G T+ +   + N      VK+NG  I E+    +F+R
Sbjct: 248 GDRERIHQMVVILLDNAMKYTDVGGTIQVACMQTNSSITIQVKDNGIGIKEEEIPKLFDR 307

Query: 742 FV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F   +  R +  G GLGLSI    +  H G + + S     T     +P  +
Sbjct: 308 FYQGDKARTKAEGAGLGLSIASWIVEKHHGKIKVESKMNEGTCFEVILPKNQ 359


>gi|170740240|ref|YP_001768895.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium sp. 4-46]
 gi|168194514|gb|ACA16461.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium sp. 4-46]
          Length = 584

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 125/255 (49%), Gaps = 24/255 (9%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RA R L  +   LR+A+++K   +  V+++L++PL  I+G  ++L     G L     Q
Sbjct: 333 MRANRRLALQRSDLRRANQLKTEILGTVAHDLKNPLAVILGRAEML-----GDLVGTLPQ 387

Query: 609 YVE-------YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-- 659
            VE       +I  S+  L  ++  ++  A  DA  + L    +    L  EV QS A  
Sbjct: 388 PVEAMRAQVGHIRESARRLTGMIESLIADAMNDALDITLRREPVDFAALAREVAQSNAPL 447

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +    ++R ++ +      F+  D +RL +    ++SNA+ +S  G  +++  A+D  D
Sbjct: 448 AETKAQHLRTEIPAS----LFICGDGERLREAMDNLVSNAIKYSPNGGEIVVGVAQDETD 503

Query: 719 FIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +F+V++ G  + PED  + +F RF  +S    G     GLGLSIV+    LHGG  +  
Sbjct: 504 TVFAVRDFGPGLSPEDQGR-LFGRFQRLSAKPTGGEGSTGLGLSIVKRIAELHGGRATAE 562

Query: 776 SSDEGV-TTINCRIP 789
           S   G  +T   R+P
Sbjct: 563 SHAPGAGSTFAIRLP 577


>gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A]
 gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1319

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 132/250 (52%), Gaps = 12/250 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L     A ++A  +K+ F+ ++S+E+R+P+T +IG  +LL   +   L+++Q +  E
Sbjct: 711 KRQLLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVE---LDAEQRELTE 767

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-- 669
            I  S+  LL ++NDILD + +++G + +      L  ++ EV + ++      ++    
Sbjct: 768 NIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVGKMLSFTAERKSLAFNY 827

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVK 724
           ++ SD  +   V  D  R+ QI + + +N++ F+ +G   + +   ++  D I   F ++
Sbjct: 828 EICSDIGIDLVVMGDPGRVRQIITNLATNSIKFTHEGHVKLHVSVEQETDDTIEVKFVIQ 887

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I E++ K +F  F        R+  G GLGL+I ++ + L  G ++++S  +  T
Sbjct: 888 DTGIGIEEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLLELMKGRMALASKKDEGT 947

Query: 783 TINCRIPSKE 792
           T    IP K+
Sbjct: 948 TATFWIPFKK 957


>gi|330842920|ref|XP_003293415.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum]
 gi|325076250|gb|EGC30052.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum]
          Length = 947

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT   +A  +A + +  F+  +S+E+R+PL  +IG   LL+ S   +L  ++    + + 
Sbjct: 545 LTIAKDAAIEAYQARQEFLATMSHEIRTPLNGLIGMATLLRDSH--NLPPEEKTMAKAVK 602

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +   ILL LVNDILDL+ ++A  M L +    + +L  ++   ++ + +E  I++   +S
Sbjct: 603 SCGDILLRLVNDILDLSKLEANQMGLEHIPFKMRELTQQICHVLSGQANEKGIQLACEVS 662

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----------KAARDNGDFIFS 722
           D    + V D  R+LQI   +  NA+ F+  G   I+            + +   +  F 
Sbjct: 663 DKIPATLVGDSGRILQILMNLTGNALKFTQSGYVKIIVDLIEEESELVSSRKGEYNISFR 722

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           +K+ G  +P +  + +F  FV       R+  G GLGL +    + L  G + +
Sbjct: 723 IKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVKLMKGEIGV 776


>gi|325283718|ref|YP_004256259.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus proteolyticus MRP]
 gi|324315527|gb|ADY26642.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus proteolyticus MRP]
          Length = 530

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 14/261 (5%)

Query: 535 NAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF-TD 592
           N Q  +   +  D V A   A     E L  + E +  F    S+ELR+P+T I G  T 
Sbjct: 265 NLQARVPVPHSDDEVEALAVAFNRMLERLEDSFETQRRFSSDASHELRTPVTAIGGHATY 324

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ ++L   + +Q + V+ I   S  + +L+  +L LA  D G++ L    +    LL+
Sbjct: 325 LLRRTEL---DPQQRESVQIIQRESARMTDLIGSLLQLARSDGGVLTLKSQLLFSQMLLH 381

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV + +   + E+   + ++  G+   F AD  RL Q+ + ++SNA+     G+T I   
Sbjct: 382 EVAREL-RPLAESEGAV-LVPAGQDIPFEADPDRLRQVLNNLISNAL---KAGATRIELG 436

Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
           +   + G    SV +NG  I  D  + +F+RF  + ++    R G GLGLSI  + ++ H
Sbjct: 437 STQPEPGRVRLSVSDNGPGIAADQLEKLFDRFYRLEDSRSRDRGGAGLGLSIARTIVDAH 496

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG + + S     T     +P
Sbjct: 497 GGRIWLESEPGQGTQAYVDLP 517


>gi|291537656|emb|CBL10768.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 437

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 117/219 (53%), Gaps = 7/219 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +++  F  +VS+EL++PLT I G+ +L+ +   G  ++  + +   I  S+  L  L+ND
Sbjct: 218 QMRQEFTANVSHELKTPLTAISGYAELIASGMTGGEDT--AHFANEIHKSAERLQALIND 275

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           I+ L+ +D   +KL + T+ L+DL  +   S+  +  +N + + +  +G       ++  
Sbjct: 276 IIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEVTLHL--EGASVPMNGNKTL 333

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           L ++   + SNA+ ++ KG +V +    +N   +  VK+ G  IP++  + VF RF  V 
Sbjct: 334 LEELLFNLCSNAVRYNKKGGSVTIVTTIENTRPVLIVKDTGIGIPKEQQERVFERFYRVD 393

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            +      G GLGL+IV+  +  H   +++ +S+ GV T
Sbjct: 394 KSRSKSTGGTGLGLAIVKHIVAQHDAQMTL-TSEVGVGT 431


>gi|228991457|ref|ZP_04151409.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
 gi|228997559|ref|ZP_04157172.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228762187|gb|EEM11120.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228768259|gb|EEM16870.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
          Length = 360

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 110/225 (48%), Gaps = 3/225 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ ++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I      
Sbjct: 127 EEERQTEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVNR 185

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ND+ +   V    ++LN   I + +LL ++      +  E NI  ++    +   
Sbjct: 186 LNMLMNDLFEYTRVQNNELQLNTVLIDIIELLGQLSVQFRMQFQEANIECRLSFPPEKLM 245

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD  +L+++F  ++ NA+ + + G  + + A +D    +  + N G  IP      +F
Sbjct: 246 VLADGDKLVRVFENLIMNAITYGNDGKFIDITAYQDGNMIVIDITNYGQPIPSTDLAHIF 305

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            RF  V  +      G GLGL+I +S + +H G + + S  E  T
Sbjct: 306 ERFYRVEKSRSAYTGGSGLGLAIAKSIVEIHDGTIEVYSDTEQTT 350


>gi|188990156|ref|YP_001902166.1| two-component system sensor histidine kinase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731916|emb|CAP50100.1| two-component system sensor histidine kinase [Xanthomonas
           campestris pv. campestris]
          Length = 603

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 175/404 (43%), Gaps = 48/404 (11%)

Query: 410 GGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G  IW+ +  +  ++  E +Y       G  +  + E + +     RI L NPAF  L+ 
Sbjct: 199 GTVIWLLQRQIRRRLAAEQEYLRASGRAGSVLQTVREPIVLLDARQRIVLHNPAFAELYG 258

Query: 469 TEE--NRL------------SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            EE  N L             P  H R +A    R   + + WD        F+ E++  
Sbjct: 259 LEERGNELMLLDDVGDGAWRDPQIHQR-LADVLLR---DRELWD--------FEHEQRGA 306

Query: 515 QGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTD-------SVRAE---RALTEKNEALR 563
            G L  +   ++    +PLP+  +  +  + V+D         R +   R L  K E + 
Sbjct: 307 DGVLRTM---LINARRMPLPDDGEEEVVLMTVSDISLQKVSQQRIQELNRQLEGKVEQVS 363

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + +    +F   VS++LR+PL ++ GF+D L      + + K   Y+E IS+S+  + +L
Sbjct: 364 EVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASL 423

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           ++D+L  + +    ++L    + +  L+ E +  +   +   N   +V      L   +A
Sbjct: 424 IDDLLVYSRLGRSALRLQ--AVDMQSLVAETRAILDANVQSENTGHRVDWHIAPLPVLIA 481

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIPEDMCKSVF 739
           D   + Q++  ++ NA+ +S+K     ++   +   +G   F+V++NG+    D    +F
Sbjct: 482 DENMMRQLWMNLMGNAVKYSTKREVAKIQIGYEPMPDGGHYFTVRDNGAGFDMDYSGKLF 541

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
             F       +  G G+GL+ V   +  HGG V +    DEG T
Sbjct: 542 GVFQRLHKVSEYPGTGIGLASVRRVLARHGGRVWAEGVVDEGAT 585


>gi|78356407|ref|YP_387856.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218812|gb|ABB38161.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 974

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 14/253 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA++ L + +     A   K+ F+ ++S+E+R+PL  IIG T+L   S    L     + 
Sbjct: 448 RAQKQLEKTSREAEAASRSKSEFLANMSHEIRTPLNAIIGLTEL---SLQEDLPEGVGEN 504

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +    +S+  LL++VNDILDLA V++G + L      L   L  V + +  +     +  
Sbjct: 505 LRASLSSAEALLDIVNDILDLARVESGKLHLEEVEFSLPRFLGGVMRVMRHEAERKGLDF 564

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI------- 720
            + +  G     + D  RL QI   ++ NA+ F+ +G   V ++    +G +I       
Sbjct: 565 SMFLGRGLPRELMGDSGRLRQILVNLIGNAIKFTEEGGVNVAVECVSSSGGYIAGVQRVR 624

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F+V++ G  IPE +   +F  F        R+  G GLGL+I    + + GG +S+ S  
Sbjct: 625 FTVQDTGIGIPEHLHGIIFENFRQADGSITRKYGGTGLGLTISRQLVEMMGGSISLRSEA 684

Query: 779 EGVTTINCRIPSK 791
              +     +P K
Sbjct: 685 GKGSRFEVELPFK 697


>gi|332291290|ref|YP_004429899.1| histidine kinase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169376|gb|AEE18631.1| histidine kinase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 739

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 14/232 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGSLNSKQSQYVEYI 613
           LT KNE+  ++ + K +F   VS+ELR+PL  +IG  T L+   KL S      Q ++ +
Sbjct: 348 LTAKNES-EQSTKAKTAFFSTVSHELRTPLYGVIGLSTILMDDPKLKS----HQQDLKSL 402

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL L+ND+L +  +D+  +  N       D +  +  S      +N   I +  
Sbjct: 403 KFSADYLLALINDVLQINKIDSNTVIENNEVFNTRDFIRNIVSSFEYMRQQNKNNIHINI 462

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA--RDNGDFI-FSVKNNGS 728
           D  +  FV  D  RL QI   ++ NA  F+  G   +IL+A+  RD    I F++++ G 
Sbjct: 463 DENVPEFVKGDATRLSQILMNLVGNACKFTENGDIYIILEASGVRDQKTSIHFTIQDTGI 522

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            IP +  +S+F+ F  VS+ H    +G GLGL IV+  + L G  + +SS +
Sbjct: 523 GIPAEKQQSIFDEFSQVSSRHYT-YQGTGLGLPIVQKLLALSGSEIHLSSKE 573


>gi|301309128|ref|ZP_07215072.1| putative two-component regulator sensor kinase [Bacteroides sp.
           20_3]
 gi|300832810|gb|EFK63436.1| putative two-component regulator sensor kinase [Bacteroides sp.
           20_3]
          Length = 416

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 132/251 (52%), Gaps = 19/251 (7%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ D  + E+ L      L +  E K  F+ ++S+E+R+PL +I+GF++LL + K   L
Sbjct: 176 ININDMKKREKELI-----LMRGYEQK--FLANMSHEIRTPLNSIVGFSNLLASEK--DL 226

Query: 603 NSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIA 659
           +    Q + + I+ S  +LL L+NDIL+++ + +G MK    +  + +L+++  +   + 
Sbjct: 227 DEADKQLFAKTINQSCDLLLVLINDILEVSRLQSGQMKFEKESCSVKELVDDLYLAHQLL 286

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
              H   +R    ++G L  +  D++RL Q+ +  L+NA  F++ G   +  K  R   +
Sbjct: 287 VPAH---LRFSKEAEGDLFIYT-DKKRLSQVITNFLTNACKFTNSGYIKLGFKHLRGTDE 342

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
               V+++G  + E+  + VF+RF       Q  G GLGLSI +  +   GG +++SS  
Sbjct: 343 AAIFVEDSGIGLSEEEQEKVFSRFFKQDEFSQ--GAGLGLSICQGIVQNLGGRIALSSKQ 400

Query: 779 EGVTTINCRIP 789
              +  +  +P
Sbjct: 401 GEGSRFSVVLP 411


>gi|317129906|ref|YP_004096188.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474854|gb|ADU31457.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 592

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 119/221 (53%), Gaps = 12/221 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K ++ +  FV +VS+EL++P+T++ GFT+ L +   G+++ +Q   +++  IS  S  
Sbjct: 357 LKKLEQARKDFVANVSHELKTPVTSLKGFTETLLS---GAVHDEQLREKFLTIISNESER 413

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKL 677
           L +L++D+L+L+ ++     LN+  + ++ LL++V   + +K    NI    +VI D  +
Sbjct: 414 LESLIHDLLELSKIEGSQFVLNWDLVNIDVLLSDVFMMLESKAQNKNIHFSKEVIGDTVI 473

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               AD  R+ Q+F  I++NA+ ++     V +K        I  V++ G  I +     
Sbjct: 474 E---ADAHRIKQVFINIINNAIMYTPNDGEVHVKVIEKAETVIVEVQDTGIGISKKEIPR 530

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +F RF  V  A      G GLGL+IV+  I  H   +S+ S
Sbjct: 531 IFERFYRVDRARSRNSGGTGLGLAIVKHLIEAHRATMSVDS 571


>gi|228911304|ref|ZP_04075108.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
 gi|228848322|gb|EEM93172.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
          Length = 588

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 419

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 420 KLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 477

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V  A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|269926187|ref|YP_003322810.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789847|gb|ACZ41988.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 354

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 117/232 (50%), Gaps = 15/232 (6%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLL-------KTSKLGSLNSKQSQYVEYISASST 618
           +E KN F+ +V++ELR+PLT ++  T+++         S+LGS+       +  +  ++ 
Sbjct: 122 EEAKNDFLSNVTHELRTPLTALVATTEVMLQDYKDIPQSELGSM-------INLLHRNTR 174

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L +LV+++LD+A +  G + L  S   +  L+ +    +   ++  N R+++ +  +  
Sbjct: 175 RLESLVSNLLDVAAIQNGTLHLRKSWASVESLVKDAIDFVQPLLNSKNQRLEIRTISEAP 234

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   D++R++ +   +LSNA  +      + L  A +      SV+  G  IP++    +
Sbjct: 235 ALFVDQRRIISVIVNLLSNASRYGPPNEPIQLIMANEGTLVRISVRQRGPGIPKNEIAML 294

Query: 739 FNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF   +   +   G GLGL+IV+  + LHGG V ++S     TT    +P
Sbjct: 295 FKRFYRASTSDKSPVGTGLGLAIVKEVVELHGGTVGVTSQSGKSTTFWFTLP 346


>gi|56479368|ref|YP_160957.1| two-component hybrid sensor kinase/response regulator [Aromatoleum
           aromaticum EbN1]
 gi|56315411|emb|CAI10056.1| Two-component regulatory system protein containing hybrid kinase
           and response regulator domains [Aromatoleum aromaticum
           EbN1]
          Length = 1015

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 28/259 (10%)

Query: 544 NVTDSVRAERALTE--------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           ++T+  RA+R L +        + EA R A+  K+ F+  VS+ELRSPL  + G++ +L 
Sbjct: 599 DITERKRAQRELEQLLVAEHRLRGEAER-ANRAKDEFLAIVSHELRSPLNALKGWSQVLT 657

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLN------LVNDILDLATVDAGIMKLNYSTIVLND 649
            S          +    + A+  I  N      L++D+LD + + +G ++LN   + L +
Sbjct: 658 ASG-------NPEPATVLRAAEAIKRNIDHQARLIDDLLDTSRIISGKLELNSRRVNLVE 710

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST 707
           +++              I ++V  D    S +   D  RL QI   +L+NA+ F+ +G  
Sbjct: 711 IVHAAIDLSWDTAKAKRIELRV--DTACPSLMINGDHDRLQQIVINLLANALKFTPEGGW 768

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           V L+ A+     I SV ++G  I       VF+RF        RR  G+G+GL++V + +
Sbjct: 769 VELRLAQGETSVILSVADSGVGIEAGFLPHVFDRFSQADTSMTRRHQGLGIGLALVRNLV 828

Query: 766 NLHGGHVSISSSDEGVTTI 784
            LHGG V + S+  G  ++
Sbjct: 829 ELHGGAVRVESAGPGCGSV 847


>gi|330965670|gb|EGH65930.1| sensory box histidine kinase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 595

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 157/353 (44%), Gaps = 23/353 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +D + +G+ +    G ++  NP  +     +E+RL      +++    SR   E D  +
Sbjct: 263 VLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLG-----QSLGEALSR--PELD--E 313

Query: 499 LFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556
               ++     ER      +E+  +S +L YS+ P+ + +  +L  V V   V  +RA  
Sbjct: 314 QLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF- 372

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                    + +++ FV   S+ELR+P+T +     LL+     +  S+++  +  ++  
Sbjct: 373 ---------ERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTEE 423

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L+ L+ND+L+ +    G+ KL  +   +  LL E +     +  E +I + +     
Sbjct: 424 MQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARYEGQAQEQDIVLILDIQEP 483

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I      
Sbjct: 484 MPRLHADQSQLERVLDNLLDNALRHTPPSGLIRLQARRHGERAIISVEDNGEGIAYGQQG 543

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  FV    +  + G GLGL++ +  + LHGG + + S     T     +P
Sbjct: 544 RIFEPFVQVGRK--KGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|256848580|ref|ZP_05554021.1| phosphate regulon sensor kinase PhoR [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714632|gb|EEU29612.1| phosphate regulon sensor kinase PhoR [Lactobacillus coleohominis
           101-4-CHN]
          Length = 384

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 119/235 (50%), Gaps = 10/235 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILL 621
           R+ ++ K+  + +VS++LR+PLT+IIG+  L++  +  S     +  ++ Y  A    + 
Sbjct: 144 RQIEKSKDELITNVSHDLRTPLTSIIGYLRLIEDKQYHSEEDILKYSHIAYEKAKQ--MK 201

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N+V D+ +   V      +N+  + L  LL +V  S   ++   N  I+V S       V
Sbjct: 202 NMVEDLFEYTKVQQHGAPVNFMPVDLGQLLEQVCASF--ELEGENRGIEVSSQTTPTPLV 259

Query: 682 --ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D ++L ++FS +++N + +    S + L A +       +V N+G  IP D    +F
Sbjct: 260 IDGDPEKLGRVFSNLVANGIKYGHGASYIRLDAIQHGDQVTVTVANDGERIPADSLSHLF 319

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  V  +      G GLGL+IV+S ++LH G+V + S+D     I   +P+K+
Sbjct: 320 ERFYRVEASRSKATGGTGLGLAIVKSVVDLHHGNVEVQSNDNQTAFI-VTLPTKQ 373


>gi|150005253|ref|YP_001299997.1| putative two-component histidine sensor kinase [Bacteroides
           vulgatus ATCC 8482]
 gi|149933677|gb|ABR40375.1| putative two-component histidine sensor kinase [Bacteroides
           vulgatus ATCC 8482]
          Length = 667

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 11/227 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  E  L  K +A  +++ +K +F+ ++S+E+R+PL  I+GF+ +L +       +++ Q
Sbjct: 427 VSGEELLVAKEKA-EESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSP--AEKEQ 483

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL+L+NDILD++ +++G +K  +      D++   + +++T  +     
Sbjct: 484 YCDIIQKNSDLLLHLINDILDISRMESGRIKFVWEEC---DVVELCQTALSTVEYGRKTS 540

Query: 669 IKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
              + +  + S V   D QRL Q+   +LSNA  F+  GS  +  A  + +     SV +
Sbjct: 541 ALFLFETPVPSLVVKTDAQRLKQVLINLLSNAAKFTPSGSIKLTVAIDKQHQQLELSVSD 600

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G  IP D  + VF RF       Q  G GLGL+I    I   GG +
Sbjct: 601 TGCGIPPDKSEKVFERFEKLNEYSQ--GTGLGLAISRLIIENLGGKI 645


>gi|127512132|ref|YP_001093329.1| hybrid sensory histidine kinase BarA [Shewanella loihica PV-4]
 gi|126637427|gb|ABO23070.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 933

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 122/234 (52%), Gaps = 14/234 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L++ Q  Y++ I  S
Sbjct: 293 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTP----LHASQQDYIKTIEKS 347

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +T LL ++NDILD + ++AG M+L      L +++++    +A    E ++ + V  +  
Sbjct: 348 ATNLLGIINDILDFSKLEAGKMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPS 407

Query: 677 LGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIP 731
           +   V+ D  R+ Q+ + ++ NA+ F+  GS  + ++   +  + +     + + G  I 
Sbjct: 408 INDNVSGDALRVSQVITNLVGNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITDTGIGID 467

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
           +     +F  F        RR  G GLGL I +  IN  GG +  IS+  +G T
Sbjct: 468 KPHQAQLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGST 521


>gi|88861389|ref|ZP_01136019.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
 gi|88816655|gb|EAR26480.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
          Length = 1106

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 111/206 (53%), Gaps = 8/206 (3%)

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIGF+D+L  +   +L+ +Q +++  IS S+  LL+L+ND+LD A +D
Sbjct: 544 NMSHEIRTPMNAIIGFSDILLDT---ALDKEQLKHLSTISRSAKSLLHLLNDVLDSAKLD 600

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693
            G ++L      L D ++ V  ++  +  + N+ ++     K+ S ++   +RL QI + 
Sbjct: 601 KGKLELENRVFSLTDEIDTVVSTLWLQAKQQNLALEADISPKMASHYLGSPERLRQILTN 660

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           ++ NA+ F+++G   +           F + + G  +  +  + VF+ F S A     R 
Sbjct: 661 LIGNAVKFTAQGKVTVKIYPSAEQSVTFEIIDTGIGMSAEQLEHVFDAF-SQADASMSRK 719

Query: 753 --GVGLGLSIVESFINLHGGHVSISS 776
             G GLG +I +  + L GG + + S
Sbjct: 720 YGGTGLGTTISKQLVELMGGEIEVES 745


>gi|294055873|ref|YP_003549531.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293615206|gb|ADE55361.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 586

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 8/227 (3%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+ ++S+E+R+P+  ++G  DLL  +++   +++Q Q V    +S+  L+ ++NDI
Sbjct: 183 MKDIFLANMSHEIRTPMNGVLGMIDLLYDTEM---DAEQEQLVGTARSSAETLMRIINDI 239

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD + ++AG + +      L +++       +    E  I + V  D      V D  R 
Sbjct: 240 LDFSKIEAGKVSVELMPFNLIEIVESSAALYSEAATEKEIDLAVAFDDVPAWVVGDPHRY 299

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVS 744
            Q+ + ++SNA+ F+  G   I     + G     +  VK+ G  IP      +F  F  
Sbjct: 300 QQVLNNLISNAVKFTDSGEVEIRACQVETGSGLGILTEVKDTGIGIPASKVTKLFEPFTQ 359

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 RR  G GLGLSI  +   L GG +   S  +  T  +  +P
Sbjct: 360 AEESHARRFGGTGLGLSICRNLCELLGGEIECDSQLDDGTVFSFVLP 406


>gi|284007634|emb|CBA73284.1| virulence sensor protein BvgS precursor [Arsenophonus nasoniae]
          Length = 932

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 120/236 (50%), Gaps = 7/236 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LTE  +   +A   K+  +  +S+ELR+PL  I G  +LL+T+    L+ KQ+       
Sbjct: 391 LTEAKQLAERATARKSEHLTTISHELRTPLNGITGSLELLQTT---PLSEKQANLRNTAY 447

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  LL+++N+ILD + ++A  ++LN     +  ++++   +I   + +  +++  I +
Sbjct: 448 TCAKSLLSIINNILDFSRIEADQVELNLRRYPILKIVDDAMVTIQPHLIDKPVKLHCIVN 507

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +  S   D  R+ QI   +L NA  F+ +G  +IL    +     F +K+ G  I E+
Sbjct: 508 NDVPESSNLDSLRVQQILVNLLGNAAKFTEQGH-IILTIKVEKNQLCFYIKDTGPGIKEE 566

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F  FV ++H   + G GLGLSI E    + GG++++ S+     T   R+P
Sbjct: 567 DQVCIFQPFVQSSHY--KVGTGLGLSISEKIAIIMGGNITLKSNYGYGCTFIFRMP 620


>gi|258507900|ref|YP_003170651.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|257147827|emb|CAR86800.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|259649227|dbj|BAI41389.1| two-component sensor kinase [Lactobacillus rhamnosus GG]
          Length = 555

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 32/354 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ID+L  GV +   +  + L N A   L   +            I      Y ++   + L
Sbjct: 222 IDNLPLGVMLIDTNKDVILHNHAMSQLLGHQ------------IPQPRHNYLDDVKTYAL 269

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              I  +F  E+   Q    L +   ++ S+IPL    + L  + +   V          
Sbjct: 270 ARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRLQVLVILYDV---------- 319

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASS 617
             LR+ ++++  FV +VS+EL++P+T I GF + L +   G+ N   +  ++++ I   S
Sbjct: 320 TYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLS---GAKNDPATLDKFLKIIFDES 376

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L+NDIL L+  ++   +   + + L  L+++  +++A  + +  IR++V     L
Sbjct: 377 KRLTQLINDILTLSRPESN--QTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDL 434

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              V D ++L QI   +L+NA+ ++     V + A    G    +V + G  IPE     
Sbjct: 435 -QVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETEQAR 493

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF  V  A      G GLGL+IV   +    G V++SS     +T    +P
Sbjct: 494 IFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLP 547


>gi|253989039|ref|YP_003040395.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780489|emb|CAQ83651.1| sensor protein [Photorhabdus asymbiotica]
          Length = 943

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 128/252 (50%), Gaps = 7/252 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+++  VR E++L E   A  +A   K+ F+  VS+ELR+PL  IIG  +LL+     
Sbjct: 443 VLVDISARVRMEKSLQEMALASEQASYSKSMFLATVSHELRTPLYGIIGNLELLQAH--- 499

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL ++ ++ +  ++ SS +LL +++DILD + +++  +K+        ++++ V  +   
Sbjct: 500 SLPAESARLLSTMNNSSALLLKIISDILDFSKIESKQLKIEPKEFSCQEVISHVISNYLP 559

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + + ++ +    +  + +++  D  RL Q+ S +L+NA+ F+  G   I     D    
Sbjct: 560 LVVKKSLSLYCYIEPDVPNYIRNDPVRLQQVISNLLNNAIKFTDTGCVAI-HVVVDKDYL 618

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V++ G  I +     +F+ F  +        +G GLGL+I E  INL  G + + S 
Sbjct: 619 YVRVRDTGVGISDKELIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQ 678

Query: 778 DEGVTTINCRIP 789
            +  +  + R+P
Sbjct: 679 PQIGSMFSIRLP 690


>gi|238918557|ref|YP_002932071.1| aerobic respiration control sensor protein ArcB [Edwardsiella
           ictaluri 93-146]
 gi|238868125|gb|ACR67836.1| aerobic respiration control sensor protein ArcB [Edwardsiella
           ictaluri 93-146]
          Length = 778

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   LN +Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LNEEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+  TI     L +++      +    +  
Sbjct: 321 LKTIHVSAIALGNIFNDIIEMDKLERRKVQLDNQTIDFTGFLTDLENLSGLLVQPKGLSF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNG 727
            +  D  L    + D  RL QI   ++ NA+ F+ +G  V ++  R+  D  +F V++ G
Sbjct: 381 TLAPDPALPHKVMVDGTRLRQILWNLIGNAVKFTQRGG-VSVRVWREQQDKLLFEVRDTG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
             IP +    +F  +  V + H G+   G G+GL++ +      GG + +SS
Sbjct: 440 IGIPPEEQDKIFAMYYQVKDMHGGKPATGTGIGLAVSKRLAQTMGGDIVVSS 491


>gi|229020105|ref|ZP_04176886.1| hypothetical protein bcere0030_45990 [Bacillus cereus AH1273]
 gi|229026334|ref|ZP_04182693.1| hypothetical protein bcere0029_46120 [Bacillus cereus AH1272]
 gi|228735050|gb|EEL85686.1| hypothetical protein bcere0029_46120 [Bacillus cereus AH1272]
 gi|228741215|gb|EEL91432.1| hypothetical protein bcere0030_45990 [Bacillus cereus AH1273]
          Length = 357

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 127/245 (51%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  + +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 113 ASEKLKEAVERGDFAESSKDQLIVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 172

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + ++++  
Sbjct: 173 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKQIDISELLIQLDEELYPLLEKHHLEA 230

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V +    DN + +  + N G S
Sbjct: 231 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGCDGQFVDMNGYIDNEEVVVQIINYGDS 289

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ I  H G +S + SD   T    R
Sbjct: 290 IPEEDLPYLFDVFYTGDKSRTEDRGGTGLGLFIAKNIIEQHDGTIS-AESDVIRTIFEVR 348

Query: 788 IPSKE 792
           +P +E
Sbjct: 349 LPKEE 353


>gi|229195762|ref|ZP_04322522.1| hypothetical protein bcere0001_13260 [Bacillus cereus m1293]
 gi|228587659|gb|EEK45717.1| hypothetical protein bcere0001_13260 [Bacillus cereus m1293]
          Length = 603

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 142/292 (48%), Gaps = 33/292 (11%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 325 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 364

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   + Y + 
Sbjct: 365 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTTYYTDV 420

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L+ +V   +   M E ++++ + 
Sbjct: 421 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELIQQVYTKLLFSMEEKHLQVNID 480

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D  +  FV A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IP
Sbjct: 481 VDPSI--FVKANRSRIEQVVVNLLSNAIRYTPDGEKIQVSVIEMEDTVKVEIENTGNPIP 538

Query: 732 EDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ED  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 539 EDSLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 590


>gi|189467846|ref|ZP_03016631.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
 gi|189436110|gb|EDV05095.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
          Length = 507

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 9/226 (3%)

Query: 555 LTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +TE  EA  KA+E   +K++F+ ++S+E+R+PL  I+GF+ +L +  +   ++K+  YV 
Sbjct: 268 ITELLEAKEKAEESNKLKSAFLANMSHEIRTPLNAIVGFSSIL-SEYIQEEDAKE--YVH 324

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++ +LL L+NDILD++ ++AGI++     + +N  L E+K +IA       I I +
Sbjct: 325 IIEENNQLLLQLINDILDISRIEAGILEFIEENMDVNASLYEIK-AIAELKVSPKIEIHL 383

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +   +         R+ Q+ +  +SNA+  +  G   I       G   F V++ G+ IP
Sbjct: 384 LPGLETCVIHTVPHRVKQVINNYVSNAIKHTEAGHIDIGYYTPQEGYIRFFVRDTGTGIP 443

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +  K +F RFV       ++G GLGLSI         G + ++S+
Sbjct: 444 TENQKHIFERFVK--LDSFKQGTGLGLSICTIIAEKMNGKLGVNST 487


>gi|317405052|gb|EFV85400.1| hypothetical protein HMPREF0005_04492 [Achromobacter xylosoxidans
           C54]
          Length = 894

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 24/273 (8%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKA----DE---IKNSFVQHVSYELRSPLTNII 588
           AQ  L      +  R ++A+TE+ +AL+ A    DE   ++  F+  +S++LR+PLT+II
Sbjct: 404 AQRELAQAREREHQRLDQAVTERTQALQAALILADEAGRVRQDFLARISHDLRTPLTSII 463

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF DL++    G  +      V  I  S+  +L +VND++D A   AG   L  +    +
Sbjct: 464 GFADLIQA---GGRDDAPRGAV--IRRSADHMLGMVNDLIDYAA-GAGGQALRLAPEYAH 517

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            LL+ V +  A      + R ++ +SD        D +R+ Q+ S ++ NA  F ++G  
Sbjct: 518 ALLDAVAKEAAPIAARQDNRFELRVSDSVPAVLEMDGKRVRQVLSNLVDNAAKF-TRGGV 576

Query: 708 VILKAARDNGD-------FIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           + L A                +V++ G  I PED  + +F  F        + GVGLGL+
Sbjct: 577 LTLTADYAAPAAGEAAGWLTLAVRDTGCGIAPEDR-QHIFEPFQRLTSADSQPGVGLGLA 635

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           IV+ ++    G + + S     TTI+  +P ++
Sbjct: 636 IVQQWVQRMNGRIHVDSEVGQGTTISVALPVRQ 668


>gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1145

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 124/246 (50%), Gaps = 5/246 (2%)

Query: 546 TDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           T  ++ +  LT K N +L++AD++K+  + + S+ELR+P+  I G  + +  S+      
Sbjct: 450 TQELQQQVKLTHKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQDLTEG 509

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q+Q +  I  S+  L  LV+D+LD   +  G ++++   +    ++  V       +  
Sbjct: 510 QQNQ-LGLIIKSADGLARLVDDLLDYHQMRYGQLEIHPQPVASKGVIRLVLDLCQHLVQA 568

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723
             + +  IS  +L   +AD QRL Q+   ++ NA+ ++ +G  V+  +A   G+F+   V
Sbjct: 569 KPLTLVDISPAELPPVLADEQRLEQVIYNLVGNAIKYTPQGKVVL--SALVEGNFLRIRV 626

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I +D  + +F   V  +    ++G GLGLSI    ++L GG + + S     +T
Sbjct: 627 TDTGIGIAKDHLEHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGST 686

Query: 784 INCRIP 789
               +P
Sbjct: 687 FAFTLP 692


>gi|330828750|ref|YP_004391702.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
 gi|328803886|gb|AEB49085.1| Sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
          Length = 1131

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++N +L++AD++K+  + + S+ELR+P+  I G  + +  S+   L   Q + +  I  S
Sbjct: 448 KQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQ-QDLTEGQQKQLGLIIKS 506

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L  LV+D+LD   +  G ++++   +    ++  V       +    + +  IS  +
Sbjct: 507 ADGLARLVDDLLDYHQMRYGQLEIHSQPVSSKGVIRLVLDLCQHLVQAKPLTLVDISPAE 566

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L   +AD QRL Q+   ++ NA+ ++ +G  V+L A  +N      V + G  I  D  +
Sbjct: 567 LPPVLADEQRLEQVLYNLVGNAIKYTPQGK-VVLSAIVENNFLRIKVTDTGIGIAPDHLE 625

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F   V  +    ++G GLGLSI    ++L GG + + S     +T    +P
Sbjct: 626 HIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLP 678


>gi|327482749|gb|AEA86059.1| sensory box histidine kinase [Pseudomonas stutzeri DSM 4166]
          Length = 591

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 145/331 (43%), Gaps = 36/331 (10%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-AFRSL-WKTEE--NRLSPG 477
           Q ++E   N   ++Q   +D + +G+ +   DGR++ +NP A R L W+ E   + L   
Sbjct: 243 QTNVEALVNGQQRLQA-LLDSIDDGLLIVDRDGRLEHANPVAQRQLAWENEHLGSTLGEA 301

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-- 535
                +     +  ++    D    ++   D ER+            +L + I P+ +  
Sbjct: 302 LGYPQLDNAARQVLDDKPLSDPPEDLVIEADGERR------------LLAWRISPVSHHD 349

Query: 536 ---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              +  ++   +VTD    ER              ++N FV   S+ELR+P+T +     
Sbjct: 350 GSISGAVMVLHDVTDQRTFER--------------VRNEFVLRASHELRTPVTGMQMAFS 395

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+       +S++S   + +      L+ L+ND+L+ +   +G  KL      + +LL 
Sbjct: 396 LLRERLRYPADSRESDLFDTVHEEMQRLVRLINDLLNFSRYQSGQQKLELEQCDVPELLE 455

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             +Q       E ++++K+     L + + DRQ++ ++   +LSNA+  + +G  V L A
Sbjct: 456 AARQRFEVNAAEQDVQLKLELQQPLPTLMLDRQQIERVLDNLLSNALRHTPRGGEVRLLA 515

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
                  I SV++NG  IP      +F  FV
Sbjct: 516 RHHGERLILSVEDNGEGIPYSQQARIFEPFV 546


>gi|325293768|ref|YP_004279632.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325061621|gb|ADY65312.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 1154

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    +    + + AL +  E    A+  K+ +V  +S+ELR+PL  ++G+  +L+ 
Sbjct: 668 QNTLLLKEIAAHKKTDAALQDAKETAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILER 727

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  ++ + +   ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L+++  
Sbjct: 728 DE--TIPAPRQSAIKVIRRSADHLSGLIDGLLDISKIEAGRLQVYSNEINIQDFLDQIVD 785

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     +  +      L  +V  D +RL QI   +LSNA+ F+ +GS V    A  
Sbjct: 786 MFRPQAQAKGLEFRHERAHSLPQYVRTDEKRLRQILVNLLSNAIKFTDEGS-VTFDVAYR 844

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           +    F+V + G  I E     ++  F        R   G+GLGL+I     N  GG +S
Sbjct: 845 SQVASFTVSDTGRGIAEKDLARIYEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEIS 904

Query: 774 ISSSDEGVTTINCRI 788
           +SS  +  +T   R+
Sbjct: 905 VSSEKDNGSTFRVRL 919


>gi|320038754|gb|EFW20689.1| sensor histidine kinase/response regulator [Coccidioides posadasii
            str. Silveira]
          Length = 2340

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 31/252 (12%)

Query: 552  ERALTEKNEALRKADEI-----------------KNSFVQHVSYELRSPLTNIIGFTDLL 594
            +R+L +  EA +KA E                  K+ F+ ++S++LR+P+T +IG ++LL
Sbjct: 1847 KRSLAQAREAEQKAKEAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELL 1906

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   +L+ +Q  YVE I   +  LL L+NDILD + ++AG MK++   + L   + EV
Sbjct: 1907 KQT---NLDRQQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRQTIAEV 1963

Query: 655  KQSIATKMHENNIR-IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
             +++     +  +  I+ + D      V  D  RL QIF  +LSN+  F+ KGS TV  K
Sbjct: 1964 VRALRYTHRDRGLETIEDLDDIAPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAK 2023

Query: 712  AARDNGDFIFS---VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
             A ++   I     V + G  I  +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 2024 VAEEDETTIRVTCIVADTGIGISNEHLARLFRPF-SQADSSTARSYGGSGLGLSICKAII 2082

Query: 766  -NLHGGHVSISS 776
              + GG + + S
Sbjct: 2083 EEVLGGKIWLRS 2094


>gi|320332928|ref|YP_004169639.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus maricopensis DSM 21211]
 gi|319754217|gb|ADV65974.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus maricopensis DSM 21211]
          Length = 364

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 12/255 (4%)

Query: 544 NVTDSVRAERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            + D+ R E  +  +N      +L + ++ + + + +V +ELR+PL  + G+T+ L    
Sbjct: 112 RLPDAGRDELGVLARNFNVLARSLERVEQDRVALLGNVGHELRTPLAALRGYTEGLADGV 171

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +        Q    I      +  L +D+  ++ V+AG + L+ ST   +DLL       
Sbjct: 172 M-----TAPQVAPAILREVRAIERLASDLSLVSRVEAGQVALHASTFSAHDLLLAAADRF 226

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                E  + +   +        AD  R LQ+ S +L+NA+  +  G  V L A    G 
Sbjct: 227 EDAYRERGVALHRPAHATPLPVHADFDRALQVLSNLLANALRHTPSGGRVTLNADATAGQ 286

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F+V++ GS IP +    +F RF   +A R +  G G+GL+I  S +   GG +S++SS
Sbjct: 287 VTFAVQDTGSGIPPEHLTRIFERFYRVDAARTRSDGSGVGLTIARSLVLQMGGQLSVTSS 346

Query: 778 DEGVT-TINCRIPSK 791
             G T T     PS 
Sbjct: 347 PAGSTFTFTLPRPSP 361


>gi|298247304|ref|ZP_06971109.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297549963|gb|EFH83829.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1110

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 112/235 (47%), Gaps = 5/235 (2%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N A ++ ++ K++F+   S+ELR+PL  +   T L++         + +  +  +     
Sbjct: 876  NSARKELEQRKDAFISMASHELRNPLAALKMQTQLVQKRLERQSLHEAATALSRVEGPVK 935

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      
Sbjct: 936  QLERLIGELLDVSKIQAGRLEYRQETVDLDALLHEVADTMQQLSTTHTI---VVRGAAPH 992

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              V D+ RL Q+F+ ++SNA+ +S     V +  +        SV ++G  IP +    +
Sbjct: 993  LLVGDKDRLGQVFTNLISNAIKYSPDTEAVEIDLSASEETVTISVHDHGLGIPREQRDKI 1052

Query: 739  FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F RF       QR   G+G+GL IV   +  H G +++ S+    +T    +P K
Sbjct: 1053 FERFYRATGPRQRAIPGLGMGLYIVAEIVKRHEGTITVDSTVGKGSTFTVTLPCK 1107


>gi|229083887|ref|ZP_04216194.1| hypothetical protein bcere0022_5430 [Bacillus cereus Rock3-44]
 gi|228699408|gb|EEL52086.1| hypothetical protein bcere0022_5430 [Bacillus cereus Rock3-44]
          Length = 424

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+    K  +   ++ +Y+  I   +  + NLV D+ 
Sbjct: 196 RSEFLASVAHELRTPLTYVRGYADI--ALKDHTSPKQRQRYLSIIKDEADSITNLVQDLF 253

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +  + + + D L+ +   +       +IR+       L S   D QR  
Sbjct: 254 LLAQMEQHNFSIETAKVQVEDFLSRIVTKVNIMYEIKHIRVSFTCPSSL-SIALDEQRFE 312

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   IL+NA   S++ S + +           S+++ G  IPE     +F+RF  V  A
Sbjct: 313 QVIINILNNAYAHSAEHSQIFIFVTVHQTHIEISIQDAGEGIPEKDIPHIFDRFYRVDKA 372

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 373 RSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLPS 416


>gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1258

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 10/241 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T     E  L   ++    A + K+ F+  +S+E+R+PL  ++G  +LL  +K   L
Sbjct: 576 MDITSRKETEVLLRNASDQAVAASKAKSDFLATMSHEIRTPLNGVLGMAELLSGTK---L 632

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q+  +  +  S   LL L+ND+LD + ++AG + +      L   + +V + +  + 
Sbjct: 633 NPEQTTQLNVLKESGEGLLGLINDLLDFSKIEAGHISIERVDFNLEKAIYDVIRLLMMRA 692

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
            E  I + V  D     F V D  R+ QI + ++SNA+ F+S G  ++ +K   D    +
Sbjct: 693 DEKGIDLLVEYDEVCPRFLVGDVFRIKQILTNLISNAIKFTSIGHVLVSVKGIVDKHGMV 752

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               SV + G  I + +   +F  FV       R+  G GLGL+I +  I L  G++S+S
Sbjct: 753 SITISVADTGVGIADKVQPHLFTAFVQADSSTTRKFGGTGLGLAITKQLIGLMNGNISLS 812

Query: 776 S 776
           S
Sbjct: 813 S 813


>gi|148654780|ref|YP_001274985.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148566890|gb|ABQ89035.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 475

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 9/252 (3%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  V  T    A RAL    EA     E +  F+   S+ELR+PLT +I  +  +    L
Sbjct: 215 MALVGATSWWLAGRALRPAQEAW----ERQQRFIASASHELRAPLT-LIRASAEVALRDL 269

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               S Q   +  + A S  +  LV+D+L L  +D+G + L   T+ L  LL  +++  A
Sbjct: 270 PPDESDQRALLHDVLAESDHMRRLVDDLLTLTRLDSGQLTLTKETVDLTALLASIQRQAA 329

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
               +  + +++   G  G   AD +RL Q+    L NA+  +  G  + L A   +   
Sbjct: 330 RLGEQRGVAVELADVG--GLMQADAERLQQVVLIALDNALRHTPSGGRITLAATPADRMV 387

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSS 777
             +V + GS I  +    +F+RF  ++  RG+  G  GLGLSI +  +   GG +++ S+
Sbjct: 388 QITVADTGSGIAPEHLPHIFDRFYRADPARGRENGNAGLGLSIAKGLVEAMGGRIAVEST 447

Query: 778 DEGVTTINCRIP 789
               TT+   +P
Sbjct: 448 VGVGTTVVISLP 459


>gi|321312444|ref|YP_004204731.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018718|gb|ADV93704.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 579

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 7/218 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K ++++  FV +VS+EL++P+T+I GFT+ L     G++  K+  S+++  I   S  L
Sbjct: 345 KKLEQMRKDFVANVSHELKTPITSIKGFTETLLD---GAMEDKEALSEFLSIILKESERL 401

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV D+LDL+ ++     L+  T     +L E++  +  K  E  I + +         
Sbjct: 402 QSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPKDPQYV 461

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+F  +++NA+ ++ +G +V +       D    V ++G  I ++    +F 
Sbjct: 462 SGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEIPRIFE 521

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF  V         G GLGL+IV+  I  H G + ++S
Sbjct: 522 RFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559


>gi|317499088|ref|ZP_07957367.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893608|gb|EFV15811.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+     ++++ KN  + +++++L++PLT+II +  LL  S     +  + Q  +YI 
Sbjct: 122 LKEQRRIAEESEQRKNDIIVYLAHDLKTPLTSIIAYLSLLNESP----DMSEEQRAKYIG 177

Query: 615 AS---STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            S   +  L  L+N+  ++   +   + L+     L  LL +V  S A    +  +  K+
Sbjct: 178 ISLEKAKRLGELINEFFEITRYNLQNITLDKKEFYLYVLLEQVMDSFAAVFKQKGLEWKI 237

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D K+  +  D  RL ++F  +L NA+ +    S + +    D  +    V+N G +IP
Sbjct: 238 EVDDKILIY-GDPDRLARVFENLLRNAVSYCYPNSLIEVYGMIDGDNAEILVRNQGKTIP 296

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E    ++F +F  +  A   +  G GLGL+I +  I LH G +   S +E  TT   R+P
Sbjct: 297 EHQLNNLFEKFYRLDEARSSETGGAGLGLAIAKEIIELHDGTIKAKSQNE-YTTFIIRLP 355

Query: 790 SKE 792
            K+
Sbjct: 356 RKK 358


>gi|310643958|ref|YP_003948716.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309248908|gb|ADO58475.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 556

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 111/215 (51%), Gaps = 10/215 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  +IG  DLL  ++   L + Q +Y + I  S+  L+ ++NDILD  
Sbjct: 172 FLAMMSHEIRTPMNGVIGMIDLLMETE---LQNDQQEYADIIRRSADALVAVINDILDFT 228

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +++G M++      L   + EV      +++  N+ +    D +    +  D  RL Q+
Sbjct: 229 KLESGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQTPPVLYGDMGRLRQV 288

Query: 691 FSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
              ++SNA+ F+ +G   +  + +   DNG  + FSVK+ G  I       +F+ F    
Sbjct: 289 LINLVSNAVKFTDQGGVYVFASVKERSDNGLTVEFSVKDTGIGIDPAKVGRLFHPFSQLD 348

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
               R+  G GLGL+I ++ +++ GG + + +S E
Sbjct: 349 SSMTRKYGGTGLGLAICKTLVDMMGGDIRVDTSGE 383


>gi|254883721|ref|ZP_05256431.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254836514|gb|EET16823.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 667

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 11/227 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  E  L  K +A  +++ +K +F+ ++S+E+R+PL  I+GF+ +L +       +++ Q
Sbjct: 427 VSGEELLVAKEKA-EESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSP--AEKEQ 483

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL+L+NDILD++ +++G +K  +      D++   + +++T  +     
Sbjct: 484 YCDIIQKNSDLLLHLINDILDISRMESGRIKFVWEEC---DVVELCQTALSTVEYGRKTS 540

Query: 669 IKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
              + +  + S V   D QRL Q+   +LSNA  F+  GS  +  A  + +     SV +
Sbjct: 541 ALFLFETPVPSLVVKTDAQRLKQVLINLLSNAAKFTPSGSIKLTVAIDKQHQQLELSVSD 600

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G  IP D  + VF RF       Q  G GLGL+I    I   GG +
Sbjct: 601 TGCGIPPDKSEKVFERFEKLNEYSQ--GTGLGLAISRLIIENLGGKI 645


>gi|193213739|ref|YP_001994938.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087216|gb|ACF12491.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 787

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 130/256 (50%), Gaps = 12/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   + E AL +      ++   K  F+ ++S+E+R+P+  +IG T+LL  +    L+
Sbjct: 248 DITHRKKTEEALVKAKILAEESMRSKERFLANMSHEIRTPMNAVIGMTNLLLRT---PLS 304

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+Q++ V+ I  SS  LL ++NDILD + +++G +        L+ LL +   + + K  
Sbjct: 305 SEQAECVDIIKQSSENLLVIINDILDFSKIESGKITFESIPFSLHSLLKKTISTFSLKAS 364

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NG 717
           E ++ + +  D     S + D  RL QI   ++ NA+ F+ KG  +++K   D     + 
Sbjct: 365 EKDLSLSLSLDASCPDSVMGDSVRLNQILVNLVGNALKFTEKGK-IVVKVQLDRRTPTHS 423

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             +FS+ + G  I  +  +++F  F    +   R+  G GLGL+I +  + L GG + + 
Sbjct: 424 VVLFSISDTGIGIDAEKQETIFESFTQAGNDTTRKFGGTGLGLAITKKLVELQGGKIWVK 483

Query: 776 SSDEGVTTINCRIPSK 791
           S      T +  +P K
Sbjct: 484 SELGVGATFSFALPLK 499


>gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1361

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 117/226 (51%), Gaps = 11/226 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA   A   K+ F+ ++S+E+R+P+  IIG   +   +    L ++Q +Y+  + +S+  
Sbjct: 729 EAAEAASRAKSDFMANMSHEIRTPMNGIIG---MTDLTLDTDLTAEQREYLTMVQSSAGS 785

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           LL ++NDILD + ++AG ++L+ +   L + L +  +++A + H+  + +   I+     
Sbjct: 786 LLTIINDILDFSKIEAGRLELDQTEFSLRNHLYDTLKTMAWRAHQKGLELVCDIAPDVAD 845

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI--FSVKNNGSSIPED 733
             V D  RL QI + ++ NA+ F+++G  ++   +   R N   +  F+V + G  IP +
Sbjct: 846 ILVGDPGRLRQIVTNLVGNAIKFTAEGEVILAVDIDERRSNNVIVIHFTVTDTGIGIPAE 905

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
               +F  F        R+  G GLGL+I    + L GG +   S+
Sbjct: 906 KLHLIFEAFSQADGSITRKYGGTGLGLTISTRMVELMGGKLRAEST 951


>gi|319643445|ref|ZP_07998068.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317384850|gb|EFV65806.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 632

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 11/227 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V  E  L  K +A  +++ +K +F+ ++S+E+R+PL  I+GF+ +L +       +++ Q
Sbjct: 392 VSGEELLVAKEKA-EESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSP--AEKEQ 448

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I  +S +LL+L+NDILD++ +++G +K  +      D++   + +++T  +     
Sbjct: 449 YCDIIQKNSDLLLHLINDILDISRMESGRIKFVWEEC---DVVELCQTALSTVEYGRKTS 505

Query: 669 IKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
              + +  + S V   D QRL Q+   +LSNA  F+  GS  +  A  + +     SV +
Sbjct: 506 ALFLFETPVPSLVVKTDAQRLKQVLINLLSNAAKFTPSGSIKLTVAIDKQHQQLELSVSD 565

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            G  IP D  + VF RF       Q  G GLGL+I    I   GG +
Sbjct: 566 TGCGIPPDKSEKVFERFEKLNEYSQ--GTGLGLAISRLIIENLGGKI 610


>gi|262384507|ref|ZP_06077641.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293800|gb|EEY81734.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 417

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 128/236 (54%), Gaps = 15/236 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ D  + E+ L      L +  E K  F+ ++S+E+R+PL +I+GF++LL + K   L
Sbjct: 175 ININDMKKREKELI-----LMRGYEQK--FLANMSHEIRTPLNSIVGFSNLLASEK--DL 225

Query: 603 NSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +    Q + + I+ S  +LL L+NDIL+++ + +G MK    +  + +L++++  +    
Sbjct: 226 DEADKQLFAKTINQSCDLLLVLINDILEVSRLQSGQMKFEKESCSVKELVDDLYLA-HQL 284

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
           +   ++R    ++G L  +  D++RL Q+ +  L+NA  F++ G   +  K  R   +  
Sbjct: 285 LVPTHLRFSKEAEGDLFIY-TDKKRLSQVITNFLTNACKFTNSGYIKLGFKHLRGTDEVA 343

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             V+++G  + E+  + VF+RF       Q  G GLGLSI +  +   GG + +SS
Sbjct: 344 IFVEDSGIGLSEEQQEKVFSRFFKQDEFSQ--GAGLGLSICQGIVQNLGGRIELSS 397


>gi|228994184|ref|ZP_04154084.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
 gi|228765636|gb|EEM14290.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
          Length = 611

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D  +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ L
Sbjct: 376 RIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNIA-PQFLTVTQEETERMIRL 434

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           VN +L L+ +D+   +L    +   D  N V         +N I  +  S  K   F+  
Sbjct: 435 VNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVIFKRSFS--KKSRFIDM 492

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  ++ Q+   I+SNA+ +S +G TV  +  RD  D +  SV + G  IP++  + +F R
Sbjct: 493 DADKITQVLYNIISNALKYSPEGGTVTYR-LRDREDMLEISVSDQGMGIPKENVEKIFER 551

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A   Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 552 FYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFVLP 601


>gi|254453564|ref|ZP_05067001.1| periplasmic sensor hybrid histidine kinase [Octadecabacter
           antarcticus 238]
 gi|198267970|gb|EDY92240.1| periplasmic sensor hybrid histidine kinase [Octadecabacter
           antarcticus 238]
          Length = 543

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 16/256 (6%)

Query: 536 AQTML----TFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            QT+L     FV+VT   R A RA+T        A+ ++  F+  VS+ELR+PLT I G 
Sbjct: 282 GQTLLGWTVAFVDVTMQKRYAARAMT--------AERVQAQFLATVSHELRTPLTVINGA 333

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL          K +  +     +S IL  LVND+LD+  +++    LN     ++D+
Sbjct: 334 LGLLNIHPSKLTAEKSTHLISLALKNSAILAKLVNDLLDMQKLESSEFTLNLEICDVSDI 393

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++    S+ T  ++ N++++          +AD+ R+ Q+   ++SNA+ FS + S V +
Sbjct: 394 ISGAVASMETFKYKGNVKLRFDRKPSGVMILADKIRMHQVVVNVISNAIKFSEENSVVEV 453

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
               +      +VK+ G  IP    + VF +F  V  +      G GLG+ I    ++ H
Sbjct: 454 CMNAEGDTVQITVKDTGRGIPAGSEEKVFGQFLQVDGSDDKDVYGSGLGMHISRQILSQH 513

Query: 769 GGHVSISSSDEGVTTI 784
           GG +   +S+ GV T+
Sbjct: 514 GGTIGY-ASELGVGTL 528


>gi|163755747|ref|ZP_02162865.1| multi-sensor hybrid histidine kinase [Kordia algicida OT-1]
 gi|161324268|gb|EDP95599.1| multi-sensor hybrid histidine kinase [Kordia algicida OT-1]
          Length = 687

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 21/256 (8%)

Query: 549 VRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           V+    L +KN  L+       KA + K  F+  V++ELR+PL  + G T LL      +
Sbjct: 293 VKTNNLLLKKNSELQLAKDNAEKAMKAKAQFLSTVTHELRTPLYAVTGLTHLLLEE---N 349

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  Q ++++ +  S   LL  +NDIL +  ++A  + +  + + L  +LN+V  S+   
Sbjct: 350 PSESQKEHLKSLKFSGDYLLTFINDILQVNKIEARKLAVEKAPLNLKKILNDVVNSLTQT 409

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716
             ENN +I + I  G     V D  ++ Q+F  ++SNA+ F+  G    S  IL+     
Sbjct: 410 SKENNNKIVLNIDKGIPEKLVGDYLKMSQVFINLISNALKFTKNGVVEISAKILEEDETQ 469

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F +K+NG  I + M +++F+ F   + +  R+  G GLGL+IV+S + L    + +
Sbjct: 470 QHIQFEIKDNGIGISQAMQENIFDSFSQGSVQINRKYGGTGLGLTIVKSLLELLESDIQL 529

Query: 775 SSS-DEGVTTINCRIP 789
            S   EG T    R P
Sbjct: 530 ESKLGEGST---FRFP 542


>gi|312793663|ref|YP_004026586.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180803|gb|ADQ40973.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 575

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 10/233 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K + I++ FV +VS+EL++PLT+I GF + LK    G+++ K   ++++  I      
Sbjct: 339 LKKLERIRSDFVANVSHELKTPLTSIKGFVETLKD---GAIDDKDVATKFLNIIEVEVER 395

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ L+ND+L L+ ++   M +    +V+ +++ E  + +  K  + NI++ V     L  
Sbjct: 396 LVRLINDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKNIQLDVKVQEGLEM 455

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +  R  L QIF  ++ NA+ ++ +   V +   + +      VK+ G  IPE   + +F
Sbjct: 456 NIY-RDWLKQIFINLIDNAIVYNKENGKVWVTVEKSDSTVTIKVKDTGIGIPEKEIERIF 514

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF     +G+ R   G GLGLSIV+  + L+GG V + S +   +     IP
Sbjct: 515 ERF-YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566


>gi|262401680|ref|ZP_06078246.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
 gi|262352097|gb|EEZ01227.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
          Length = 1112

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G L +     ++ I 
Sbjct: 429 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIII 488

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 489 NSGQRLATLVDDLLDYHKMRYGALDIQKCAVDLSSATRLVLELSHHLLGKKMLRIINQVP 548

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD QRL Q+   ++ NA+ ++S+G  VI     D+      V + G  IP D 
Sbjct: 549 EQAVWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISTTYMDD-KIRVQVVDTGQGIPADQ 607

Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F   +  +      R+G GLGLSI    I L GG + +SS     TT +  +P
Sbjct: 608 LEQIFEPLIQASRDASRYRQGAGLGLSITRQLIELMGGTLYVSSQPMVGTTFSFTLP 664


>gi|253998422|ref|YP_003050485.1| histidine kinase [Methylovorus sp. SIP3-4]
 gi|253985101|gb|ACT49958.1| histidine kinase [Methylovorus sp. SIP3-4]
          Length = 1151

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 8/258 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    + +  L +  +   +A++ K+ ++  +S+ELR+PL +I+G+  LL
Sbjct: 662 NRQTGLLLREIELHRQTDAELQQARQVAEQANQAKSRYITGISHELRTPLNSILGYAQLL 721

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 S+ + +   +  I  S   LL+L+   LD+A +++G +  +   + L + + +V
Sbjct: 722 DNDV--SIPAARQPAIRVIRRSGEHLLSLIEGTLDIARIESGKLTFDIKPLRLPEFIQQV 779

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712
                 +     +       G L   V AD++RL QI   IL NA+ F+ +G  V  L+ 
Sbjct: 780 VDMFELQARNKGLTFSYQLTGDLPDMVRADQKRLSQILINILGNAVKFTRQGGVVFRLRY 839

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGG 770
           AR+    +  +++ G  I ++    +F  F   S A+     G GLGL+I +    L GG
Sbjct: 840 ARELA--VIEIEDTGPGILKEELDEIFEPFARGSAANNSTVAGTGLGLTISKMLTQLMGG 897

Query: 771 HVSISSSDEGVTTINCRI 788
            +S+ S     T    R+
Sbjct: 898 ELSVRSVVGSGTVFQIRL 915


>gi|239624050|ref|ZP_04667081.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522081|gb|EEQ61947.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 862

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 126/244 (51%), Gaps = 19/244 (7%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R ++AL +  +  + A++ K +F+  +S+++R+P+  IIG       S +   N K 
Sbjct: 330 EQARQKQALEDACKTAQIANDAKTNFLSSMSHDIRTPMNAIIGM------SVIAQANLKA 383

Query: 607 SQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + ++     I+ SS  LL+L+N++LD++ +++G + L   TI L +L+ +V        
Sbjct: 384 PEKIQDCLNKINVSSRHLLSLINEVLDMSKIESGKIDLISETISLPELIEDVMDVFRPLA 443

Query: 663 HENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARD 715
            E +  ++V +D  +  + + D+ RL Q+   +LSNA+ ++  G  V      +   A+ 
Sbjct: 444 AEKHQELQVNADHVRHENVITDQNRLRQVLVNLLSNAVKYTPDGGCVGLWIREVPSFAKG 503

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            G + F V +NG  + E+    VF  F    +    Q +G GLG++I ++ + +  G + 
Sbjct: 504 RGQYEFIVTDNGIGMSEEFLPHVFEPFARAKDPTINQVQGTGLGMAITQNIVRMMNGTIE 563

Query: 774 ISSS 777
           + S+
Sbjct: 564 VRSN 567


>gi|237716267|ref|ZP_04546748.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407872|ref|ZP_06084420.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229443914|gb|EEO49705.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354680|gb|EEZ03772.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 628

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 11/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++     
Sbjct: 383 DITELKRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENA--- 439

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++  Y   I  ++ +LLNL+ND++DL+ +++G ++L    + L +LL+E   S+A   H
Sbjct: 440 AEKELYNSLIGHNNKLLLNLINDVIDLSKIESGYLELRPDWVNLTELLDE---SVAEYAH 496

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++++++      +   DR R+ QI S  LSNA+  ++ G   I     D+     
Sbjct: 497 QVPSGVELLTNYPAHDSLVELDRLRIKQILSNFLSNALKNTTTGHVEIFYEV-DHQSVRI 555

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  IP++M + +F RF       Q  G GLGL I +  +    G + + S     
Sbjct: 556 GVKDTGRGIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIG 613

Query: 782 TTINCRIPSK 791
           TT    +P +
Sbjct: 614 TTFIIELPCR 623


>gi|224536423|ref|ZP_03676962.1| hypothetical protein BACCELL_01297 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521978|gb|EEF91083.1| hypothetical protein BACCELL_01297 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 673

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 10/247 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +R++  L    E   +   +K+ F+Q++S+E+R+PL +I+GF+ +L +S  G  N    +
Sbjct: 434 IRSQEDLKYAKEQAEEGSRMKSEFIQNMSHEIRTPLNSIVGFSQIL-SSYYGD-NEDTKE 491

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH--ENN 666
           Y   I  +ST LL L+ND+LDL+ +D    + N     + D+    +  I       + N
Sbjct: 492 YAHIIEQNSTNLLQLINDVLDLSYLDG---EQNIPAETIADITGVCQTCIDQTYSYLKPN 548

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKN 725
           +++    + +  S   + +R+ Q+   +L NA  F++ GS  +    R+    I FSV +
Sbjct: 549 VQLIFTPERENFSMQTNPERISQVLMSLLQNAAKFTTHGSISLSYHIREEEKMILFSVTD 608

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP +  +SVF RF  N       G GLGLSI        GG ++I S+    +   
Sbjct: 609 TGIGIPIEKQESVFERF--NKLDTFMPGTGLGLSISRLIAEKMGGSLTIDSTYTTGSRFI 666

Query: 786 CRIPSKE 792
             +P KE
Sbjct: 667 LILPLKE 673


>gi|254415056|ref|ZP_05028819.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178203|gb|EDX73204.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 2724

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 11/242 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++T+  + E  L +  +A   A+  K++F+  +S+ELR+PL  I+G+  +LKT+   +L
Sbjct: 2241 IDITELKKTEIELAQAKDAAEAANRAKSAFLASMSHELRTPLNGILGYAQILKTN--SNL 2298

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              KQ   +E I      LL L+NDILDL+ V+AG ++L          L  + +    K 
Sbjct: 2299 TQKQKDGIEIIHQCGEHLLTLINDILDLSKVEAGKLELYPEDFHFPSFLVGLCEIFRLKA 2358

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDN 716
             + +I         +   V  D +RL QI   +LSNA+ F+  G+      +I K    N
Sbjct: 2359 IQKDITFNYNPPTHIPQIVHGDEKRLRQILMNLLSNAVKFTDTGTVTFTVNIIHKGQMTN 2418

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                F V++ G  +  +  + +F  F  +    R    G GLGL+I +  I L G  + +
Sbjct: 2419 DKIRFQVEDTGIGMSAEDLEKIFLPFEQIKETSR-HHEGTGLGLAITKKLIALMGSQIRV 2477

Query: 775  SS 776
             S
Sbjct: 2478 ES 2479


>gi|182434039|ref|YP_001821758.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178462555|dbj|BAG17075.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 508

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 10/229 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR A      F   VS+ELR+PL  ++  TD+L   +  +L+   ++ V  ISA +  L 
Sbjct: 255 LRDAGARARRFASDVSHELRTPLAGMLAVTDVLD-EEAATLDPDTARAVRLISAETGKLA 313

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+++++  DA   +L    +   D    V++S++ +  ++ +R ++    ++    
Sbjct: 314 VLVEDLMEMSRFDARAAELTTDEV---DAAEAVRRSLSGRKWQDRVRAELPEGIRI---R 367

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +R   I + ++ NA+   ++  TV L +    G  I  V+++G  I  D    VF+R
Sbjct: 368 LDPRRFDVIVANLVGNALHHGAEPVTVRLSS--RAGSLITEVRDSGPGIAPDALPHVFDR 425

Query: 742 FV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  ++A R +  G GLGL+I +  + LHGG +   ++  G       +P
Sbjct: 426 FYKADAARSRSSGSGLGLAITQENVRLHGGTIRAQNAPGGGALFTVELP 474


>gi|225026716|ref|ZP_03715908.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353]
 gi|224955977|gb|EEG37186.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353]
          Length = 961

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 129/236 (54%), Gaps = 12/236 (5%)

Query: 553 RALTEKNE-ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           + L EK E AL+KA++    K SF+ ++S+++R+P+  I+G+  L++    G    +  +
Sbjct: 552 QKLNEKLEIALKKAEDASLAKTSFLNNMSHDIRTPMNVILGYAQLMENELNGKDIPEVLE 611

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++E +  S  +LL+++N++LD+A +++G M+++ +   + D+   +      K  + NI 
Sbjct: 612 HLEKLQQSGNLLLSIINNVLDMARIESGRMEIDENYCRIEDVWKSLFAVFDEKARKKNIS 671

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIFSVK 724
           +    + +    + D  ++ +I   ILSNA+ ++  G +V++        ++G  I  ++
Sbjct: 672 LHYTMNVEHEHVLTDVTKVKEILVNILSNAIKYTPAGGSVMVYVDELPCDESGYMIVRIR 731

Query: 725 --NNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             + G  + +D    +F  F    N  + +  G GLG+SIV+++++L GG + + S
Sbjct: 732 ISDTGIGMSQDYLTKIFEAFTREKNTTKSKIAGTGLGMSIVKNYVDLLGGTIDVES 787


>gi|167618486|ref|ZP_02387117.1| two-component system, sensor kinase protein KdpD [Burkholderia
           thailandensis Bt4]
          Length = 928

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT I+G + +L  ++ G  ++++ + VE I   +  +  +
Sbjct: 673 ESERLRNSLLSAISHDLRTPLTAIVGLSSMLANARGGGSSAREDELVESIHDEALRMTGI 732

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + AG ++L     +L + +     +    +  +  R+++ +D  L     D
Sbjct: 733 VTNLLDMARLQAGSLQLKRQWSLLEETVGAALAACKRVLARHPARVRLPADLPL--LQTD 790

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVF 739
              + ++F+ +  NA  ++   + + + A R   D+  F+   V ++G  +P  M   +F
Sbjct: 791 AVLMERLFANLFENAAKYTPLDTPIEIGAERIVDDSRPFVRVFVDDHGPGLPAGMEARIF 850

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +F          G+GLGL+I  + ++ HGG + 
Sbjct: 851 EKFTRGEKESATPGIGLGLAICRAIVDAHGGKIG 884


>gi|117168636|gb|ABK32300.1| Jer7 [Sorangium cellulosum]
          Length = 1762

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A +AL EK   L    + K+ F+ ++S+ELR+PL +++  +D L  +   +L  +Q ++
Sbjct: 1061 QARQALEEKARQLAITSKYKSEFLANMSHELRTPLNSLLILSDQLSKNTDRNLTGRQVEF 1120

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I +S   LL L+NDILDL+ +++G + ++   +  +DL + V+++         +  
Sbjct: 1121 AKTIHSSGNDLLALINDILDLSKIESGTVIVDVGELSFSDLQDYVERTFQHVAESKRLEF 1180

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------------LKAARD 715
            ++     L   +  D +R+ Q+   +LSN+  F+ +GS  +                +R 
Sbjct: 1181 ELNFAQNLPQVIYTDAKRVQQVLKNLLSNSFKFTERGSVALDVDLVTSGWTIENEGLSRA 1240

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                  SV++ G  IP D  + +F  F        R+  G GLGL+I      + GG + 
Sbjct: 1241 GAAIAMSVRDTGIGIPHDKQQIIFEAFQQADGSTSRKYGGTGLGLAISREIAWMLGGEIK 1300

Query: 774  ISSSDEGVTTINCRIP 789
            +SS     +T    +P
Sbjct: 1301 LSSRPGSGSTFTLYLP 1316


>gi|170724253|ref|YP_001751941.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
 gi|169762256|gb|ACA75572.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
          Length = 592

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + Q  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 338 LLSYSLTPVSHPQGPILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 387

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+        ++++  +E I      L  L+ND+L+ +   +G+ KL  +
Sbjct: 388 VTGMHMAFGLLRERVKFPPQARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELA 447

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +++LL   +   + +     I +    +  L    AD  +L ++   +L NA+  + 
Sbjct: 448 PCAIDELLERAQVRFSEQASVKQIELIKALEPPLPRIQADIAQLDRVLDNLLHNAIRHTG 507

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
            G  + L A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 508 SGGRIRLHARRHAERVIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 565

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 566 IVQLHGGRMGVFSRPGQGTQFYMALP 591


>gi|157960115|ref|YP_001500149.1| histidine kinase [Shewanella pealeana ATCC 700345]
 gi|157845115|gb|ABV85614.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 885

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 143/247 (57%), Gaps = 16/247 (6%)

Query: 542 FVNVTDSVRAERALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           F N  +++  ER L +K + LR      KA++ K+SF+ ++S+E+R+PL  IIG +D++ 
Sbjct: 351 FSNKLNNLINERHLNDK-KILRAKLEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIMA 409

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +KL ++   Q++Y++ I  SS  LL L+NDILDL+ +++G + +  +   +++++ +  
Sbjct: 410 DTKLTAI---QNEYLQTIETSSQTLLLLINDILDLSKIESGNLSIINTDTDISEVVYDTL 466

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             I  K+ E ++ + V  D      ++ D  R+ Q+   +LSNA+ F+ +G   ++ +++
Sbjct: 467 TMILAKVTEKSLTLAVEIDSDTPYLISLDEHRMRQVLMNLLSNAVKFTHEGGIRVVVSSK 526

Query: 715 DNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           +  D+   I S+ ++G  I ++  + +F+ F        R   G GLGL+I +  + L G
Sbjct: 527 NTADYCDMIISIYDSGIGIAKEKQQYIFSPFTQEDDTTTREFGGTGLGLAICKQLVELMG 586

Query: 770 GHVSISS 776
           G +SI+S
Sbjct: 587 GEISINS 593


>gi|299143948|ref|ZP_07037028.1| putative sensory box histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518433|gb|EFI42172.1| putative sensory box histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 467

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           + K  E++   + +VS++L++PLT I  + ++++    G+    ++++++ I   +  L 
Sbjct: 232 ITKTMEVRKDLIANVSHDLKTPLTVIKSYGEMIRDIS-GNNEEMRNKHIDTIINEADRLT 290

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LD++ +++ + ++ +  I L ++  +V         +NN +   I  G    F 
Sbjct: 291 MLVNDLLDISKIESNLEEIKFDCIDLKEVAEDVIDRFKIMFEKNNYKFNFIYSGNTHIF- 349

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           A+++R+ Q+   +++NA+++S     + +K   D G   F   + G  IP+D   S++ R
Sbjct: 350 ANKKRIEQVIYNLINNAINYSKSEKDITIKVVGDLGVVRFDCIDKGIGIPKDKLDSIWER 409

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           F  V N H     G GLGL IV++ + LH     +  S+EGV
Sbjct: 410 FYRVRNNHTRPTVGTGLGLYIVKNILELHKFKYGV-ISEEGV 450


>gi|298249355|ref|ZP_06973159.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547359|gb|EFH81226.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 554

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+ELR+PL  +   T L++       + + +  +  +     
Sbjct: 320 NSARKELEQRKDDFINMASHELRNPLAALKMQTQLVRKRLEKQSHHEAATALSRVEGPVK 379

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ ++LD++ + AG ++     + L  LL+EV    A  M + +    V+  G   
Sbjct: 380 QLERLIGELLDVSKIQAGKLEYLQEPVDLEALLHEV----ADTMQQISTTHAVVVRGAAP 435

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            + + D+ RL Q+F+ ++SNA+ +S    TV +            V ++G  IP +    
Sbjct: 436 CTLIGDKGRLEQVFTNLISNAIKYSPDAKTVEIDLDASPEMVTIRVHDHGPGIPREQRDK 495

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RF   A   Q+   G+G+GL IV   +  HGG +++ S     +T    +P K
Sbjct: 496 IFERFYRVADPNQKAIPGLGMGLYIVAEIVKRHGGTITVDSEVGKGSTFTVTLPRK 551


>gi|295688200|ref|YP_003591893.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430103|gb|ADG09275.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 638

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 8/213 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  ++G   LLK  +L   ++   + +        +L  L+NDI+
Sbjct: 266 KSQFLANMSHEIRTPMNGVLGVLHLLKKERL---SADGRRLLNEALDCGEMLSQLLNDII 322

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG + L        +LL  V + +  +     + ++V + G LG  + D  RL 
Sbjct: 323 DVSRIEAGKLDLAAEPTEPAELLRGVAEMLRPQAEAKGLSLRVETAGDLGWAITDPLRLR 382

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSN 745
           Q    +L NA+ F+  G  V     R  GD +   + + + G  I  +    +F RF   
Sbjct: 383 QALFNLLGNAVKFTLAGGVVARLTGRREGDRLRLRYEIADTGVGIAPEAAAKLFERFRQG 442

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                RR  G GLGL+I      L GG V   S
Sbjct: 443 DGSTTRRFGGSGLGLAICRRLAELMGGDVGFES 475


>gi|255015514|ref|ZP_05287640.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 306

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 132/251 (52%), Gaps = 19/251 (7%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ D  + E+ L      L +  E K  F+ ++S+E+R+PL +I+GF++LL + K   L
Sbjct: 66  ININDMKKREKELI-----LMRGYEQK--FLANMSHEIRTPLNSIVGFSNLLASEK--DL 116

Query: 603 NSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE--VKQSIA 659
           +    Q + + I+ S  +LL L+NDIL+++ + +G MK    +  + +L+++  +   + 
Sbjct: 117 DEADKQLFAKTINQSCDLLLVLINDILEVSRLQSGQMKFEKESCSVKELVDDLYLAHQLL 176

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
              H   +R    ++G L  +  D++RL Q+ +  L+NA  F++ G   +  K  R   +
Sbjct: 177 VPAH---LRFSKEAEGDLFIYT-DKKRLSQVITNFLTNACKFTNSGYIKLGFKHLRGTDE 232

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
               V+++G  + E+  + VF+RF       Q  G GLGLSI +  +   GG +++SS  
Sbjct: 233 AAIFVEDSGIGLSEEEQEKVFSRFFKQDEFSQ--GAGLGLSICQGIVQNLGGRIALSSKQ 290

Query: 779 EGVTTINCRIP 789
              +  +  +P
Sbjct: 291 GEGSRFSVVLP 301


>gi|83718958|ref|YP_441578.1| two-component system, sensor kinase protein KdpD [Burkholderia
           thailandensis E264]
 gi|257139730|ref|ZP_05587992.1| two-component system, sensor kinase protein KdpD [Burkholderia
           thailandensis E264]
 gi|83652783|gb|ABC36846.1| two-component system, sensor kinase protein KdpD [Burkholderia
           thailandensis E264]
          Length = 1035

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT I+G + +L  ++ G  ++++ + VE I   +  +  +
Sbjct: 673 ESERLRNSLLSAISHDLRTPLTAIVGLSSMLANARGGGSSAREDELVESIHDEALRMTGI 732

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + AG ++L     +L + +     +    +  +  R+++ +D  L     D
Sbjct: 733 VTNLLDMARLQAGSLQLKRQWSLLEETVGAALAACKRVLARHPARVRLPADLPL--LQTD 790

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI-FSVKNNGSSIPEDMCKSVF 739
              + ++F+ +  NA  ++   + + + A R   D+  F+   V ++G  +P  M   +F
Sbjct: 791 AVLMERLFANLFENAAKYTPLDTPIEIGAERIVDDSRPFVRVFVDDHGPGLPAGMEARIF 850

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +F          G+GLGL+I  + ++ HGG + 
Sbjct: 851 EKFTRGEKESATPGIGLGLAICRAIVDAHGGKIG 884


>gi|83310416|ref|YP_420680.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945257|dbj|BAE50121.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1018

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 11/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ALT   E    A+  K++F+  +S+E+R+P+  +IG  +LL  ++L   ++ Q   V   
Sbjct: 491 ALTIAKENAEAANVAKSAFLAAMSHEIRTPMNGVIGMLELLDHTEL---DNDQRDLVSTT 547

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL +++D+LD + ++AG ++L    + L+ ++  V Q++A      ++ +    
Sbjct: 548 RESGLSLLRILDDVLDFSKIEAGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTLSAFV 607

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFIFSVK--NNG 727
           D  L    +AD  RL QI   +  NA+ F+++G   I          G  I S++  + G
Sbjct: 608 DPGLPPVLLADPVRLRQILFNLAGNAVKFTAQGLVAIHMGNGGTDGQGRQILSIRVADTG 667

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I   +   +F  F        RR  G GLGLSI    ++L  G     S     ++  
Sbjct: 668 IGIDSSLRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPGVGSSFW 727

Query: 786 CRIP 789
           CR+P
Sbjct: 728 CRLP 731


>gi|330828889|ref|YP_004391841.1| Virulence sensor protein BvgS [Aeromonas veronii B565]
 gi|328804025|gb|AEB49224.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565]
          Length = 1414

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 224/521 (42%), Gaps = 85/521 (16%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID------LAFLATNPS 351
            E T+N+QL     +L +L   +A+ D++  L   NR++ EL+  D        ++    +
Sbjct: 550  EKTLNEQLVFIQTLLDSLPNMVALRDRDHRLTLSNRAYRELFVGDGEEGDHWGYM----T 605

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RG 410
             DE  + LR      E+  W+T   +IF     ++   D         LHV+    P R 
Sbjct: 606  EDERQQMLRE-----ERAVWET--GDIFEGSGYTQREGDV-------PLHVVYVKLPYRA 651

Query: 411  GTIWMFENLTVQVD---LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA--FRS 465
                +   LTV  D   L+   N + +V+G   D              I  S P   ++ 
Sbjct: 652  ADGAIQGVLTVLTDVSALKAAENKVREVEGRLRD--------------ITDSMPGLVYQY 697

Query: 466  LW----KTEENRLSPG-------THIRNIAATCSRYYNESDG--WDLFAAIITSFDDERK 512
            LW    K +   LS G       TH   +AA       ES G    L    + +F D+  
Sbjct: 698  LWQGAGKGQFLYLSQGASDILGMTHQELMAA-------ESGGVILGLNDEALATFIDKVA 750

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--------------NVTDSVRAERALTEK 558
                TLE L   VL  S+      Q    FV              ++T   + E  L E 
Sbjct: 751  KHAQTLEPLDMEVLVPSVQGERYIQIRGNFVAQQGHDRLLNGVVQDITAIKQQEHELREA 810

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
              A  +A + ++ F+  +S+ELR+P++ + G  +LL+ S+L   N  Q   +  + +S+ 
Sbjct: 811  RAAAEQAMQARSLFLATMSHELRTPISGMHGMLELLRMSEL---NDDQRYLLRNVESSAN 867

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL LVNDILD + ++AG + LN  +  L  ++ +V +  A   +   +++ +  + +L 
Sbjct: 868  HLLYLVNDILDFSKIEAGQLHLNRQSCRLQPVVCDVIRGHAALAYSKGLKVTLQWEDQLP 927

Query: 679  SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                 D  R+ Q+ S +L+NA+ F+ +G+  I  +  D    + +V + G  I E+    
Sbjct: 928  DLADIDPVRVGQVVSNLLNNAVKFTEQGAISIQVSCHDQ-QLVIAVTDTGIGIAEEKQAK 986

Query: 738  VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        RR  G GLGL+I +  +   GG +++ S
Sbjct: 987  LFTPFEQVESDINRRFGGTGLGLAICDQLVKKMGGTLTVKS 1027


>gi|228924209|ref|ZP_04087480.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835427|gb|EEM80797.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 613

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|153869369|ref|ZP_01998997.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152074110|gb|EDN71002.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 483

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 32/287 (11%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-DEIKNSFVQHVSYELRSPLTNIIGFT 591
           L N Q  L             A+ E+   + +A ++ K SF+  +S+ELR+PL  I+G++
Sbjct: 193 LENLQLYLDLKEANQQTSYMLAIAEQARKMAEAANQAKTSFLARMSHELRTPLNAILGYS 252

Query: 592 DLLK--TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +++   S LG  +      ++ I  +   LL+ +++ILD++ +++  ++LN +   +++
Sbjct: 253 GMIQEDASDLGYQDILPD--LDKIQVAGKQLLDTISNILDISKIESDKLELNLTEFAVSN 310

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+NEV  +I   +  N  + +      LG   AD  ++ QI   IL+NA  F+  G   +
Sbjct: 311 LVNEVVTTIQPLIKINGNQFECQMSDDLGRLYADYHKVTQILLNILNNANKFTHAGKITL 370

Query: 710 ---------LKAARDNGDF--------------IFSVKNNGSSIPEDMCKSVFNRF--VS 744
                    + A  +N +                F + + G  IP D    +F  F  V 
Sbjct: 371 DVTRKRMSKIIAETENCELALESEVLDTFTDWVFFQINDTGIGIPSDKLNLIFEAFAQVD 430

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
            +   Q  G GLGL+I E+F    GG +S+ S+ DEG +T   ++P+
Sbjct: 431 TSTTRQFGGTGLGLAICENFCKAMGGKISLCSTIDEG-STFTIQLPT 476


>gi|149927444|ref|ZP_01915699.1| PAS [Limnobacter sp. MED105]
 gi|149823936|gb|EDM83161.1| PAS [Limnobacter sp. MED105]
          Length = 489

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 121/241 (50%), Gaps = 10/241 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           +   E    A+  K+ F+ ++S+E+R+PL  IIG T+L   +KL  +   Q ++++  + 
Sbjct: 249 SRAKEVAESANRAKSEFLANMSHEIRTPLNGIIGMTELALETKLTKV---QREFLQVAND 305

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISD 674
           S+  LL +VN+ILD + ++AG+M ++        +  +    +  +     + ++   S+
Sbjct: 306 SANTLLLIVNEILDFSKIEAGMMTIDTVVFDPKRIFEQALGPMIPRAKSKCLELQCTFSE 365

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD-NGDFIF--SVKNNGSSI 730
           G    FV D  RLLQI + ++ NA+ F+ +G   + ++A +D  G  +   S+++ G  +
Sbjct: 366 GFPKEFVGDPVRLLQIINNMVGNAIKFTERGGVYLHVQAGKDLQGIQLLKCSIRDTGIGV 425

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +   S+F  F        R   G GLGL+I    + L  G V + S     +T +  +
Sbjct: 426 PFEKVSSIFKPFEQADSSITRNFGGTGLGLTITRRLVELMRGEVWLESQVGVGSTFHFSL 485

Query: 789 P 789
           P
Sbjct: 486 P 486


>gi|118466581|ref|YP_879594.1| sensor histidine kinase [Mycobacterium avium 104]
 gi|118167868|gb|ABK68765.1| sensor histidine kinase [Mycobacterium avium 104]
          Length = 496

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 23/237 (9%)

Query: 563 RKADEIK-NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           R+A E +   FV   S+ELR+PL  I G+T+L  T ++G      +Q +  +++ +  + 
Sbjct: 263 RQASETRVRQFVADASHELRTPLAAIRGYTEL--TQRMGDDREAVAQAMSRVASETERMT 320

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLN----DLLNEVKQSIATKMHENNIRIK---VISD 674
            LV D+L LA +D+G   L    + L+    D +N+    +A   H+  + +    V+  
Sbjct: 321 RLVEDLLLLARLDSG-RPLEREPVDLSRLAVDAVNDAH--VAGPDHQWELDLPEEPVVIT 377

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G       D  RL Q+ + +L+NA   +  G+ V  + + +    +  V +NG  IP ++
Sbjct: 378 G-------DAARLHQVLTNLLANARVHTGAGTVVTTRLSTEPAHTVLQVIDNGPGIPAEL 430

Query: 735 CKSVFNRFVSNAHRGQRRG--VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF RF        R+G   GLGL+IV + +  H G +S++SS  G T    R+P
Sbjct: 431 QSEVFERFARGDSSRSRKGGSTGLGLAIVSAVVKAHNGTISVNSS-PGHTEFTVRLP 486


>gi|27468286|ref|NP_764923.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251811086|ref|ZP_04825559.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875887|ref|ZP_06284754.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|293366361|ref|ZP_06613040.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315832|gb|AAO04967.1|AE016748_201 alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251805383|gb|EES58040.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294912|gb|EFA87439.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|291319486|gb|EFE59853.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737291|gb|EGG73545.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU028]
          Length = 565

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 124/222 (55%), Gaps = 13/222 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K + ++  FV +VS+EL++P+T+I GF + L     G+ N +QS   ++  I   S  
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNR 393

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           + +LV D+LDL+ ++    +++NY    L++L   +  ++ T+ +  N RIK+ S+ +  
Sbjct: 394 IESLVTDLLDLSHIEQQKELEINYMN--LSELAINIIDNLQTQAY--NKRIKIQSEIEKD 449

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             + A   ++ Q+ + +LSNA+++SS+ + VI++  R++      +++ G  I E   K 
Sbjct: 450 VIIEAHENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKR 509

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F RF  V  A      G GLGLSI +  +  H G + + S+
Sbjct: 510 IFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSA 551


>gi|85710244|ref|ZP_01041309.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Erythrobacter sp. NAP1]
 gi|85688954|gb|EAQ28958.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Erythrobacter sp. NAP1]
          Length = 999

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 114/245 (46%), Gaps = 16/245 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+ V  E  LT        A   K+ F+ ++S+E+R+P+  ++GF +L+     G L 
Sbjct: 454 DVTERVELELLLTRARRHAENAARAKSEFLANMSHEIRTPMNGVLGFAELMLQ---GDLE 510

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               ++ E I  S   ++ L+NDILDL+ ++AG + ++   + L   L E  Q       
Sbjct: 511 PDNRRHTEMIVESGRSMMLLLNDILDLSKIEAGQIAIDSQPVDLVSTLAECVQLHLPNAE 570

Query: 664 ENNIRIK-VISDG-KLGS--------FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +R+    SD  KLG            D  RL QI   ++ NA+ F+ KGS V ++ +
Sbjct: 571 GKGLRLNFTASDAVKLGGEGARENPWVATDALRLRQIVLNLIGNAVKFTEKGS-VDVQLS 629

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                F   VK+ G  I     +++F  F    +   RR  G GLGL+I      L GG 
Sbjct: 630 IQAEQFRVDVKDTGIGIGAKRVQTIFAPFTQGENDTSRRFGGTGLGLTISRQLAELLGGQ 689

Query: 772 VSISS 776
           + + S
Sbjct: 690 IEVCS 694


>gi|163846472|ref|YP_001634516.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|163667761|gb|ABY34127.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
          Length = 1202

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 10/238 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGS--LN 603
           ++ R  RA TE      +A+++K+ F+  VS+EL++PL  I+G +D LL+ S  G+  L 
Sbjct: 574 NAARLYRAATEGRRLSEEANQLKSRFLSMVSHELQTPLNLIVGMSDLLLRESAEGTQHLP 633

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    ++ I  ++  L  L+ D+LDL + DAG ++L    + L  ++  V   I  +M 
Sbjct: 634 LQVRHDLKRIYDNARHLSRLIGDVLDLTSSDAGQLRLVCDVVDLGQVMRAVA-DIGQQMA 692

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +   I   +    G +V  DR RL QI   ++ NA+ F+++GS V L    +      +
Sbjct: 693 ADKHLIWHDAIPAEGPWVWGDRTRLQQIALNLVVNAIKFTNRGS-VSLTVTTEADAVTVT 751

Query: 723 VKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           V++ G  + PE+  +    F R   +  RG   G+GLGL+I +  + LHGG + + SS
Sbjct: 752 VRDTGIGLSPEEQARIFGEFQRTERSIERGY-SGIGLGLAICKRLVALHGGTIGVHSS 808


>gi|290992991|ref|XP_002679117.1| predicted protein [Naegleria gruberi]
 gi|284092732|gb|EFC46373.1| predicted protein [Naegleria gruberi]
          Length = 603

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 26/249 (10%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +  E L +A   K +F++H+S+E RSP  + +G  +LL+ +   +L  +Q + VE 
Sbjct: 243 RTLEKTREKLEEALSTKQTFLRHISHEFRSPCLSSLGSVELLRET---NLTCEQRELVET 299

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL-LNEVKQSIATKMHEN----NI 667
           I++S  ILLNL+ DIL +A  +    K N+   ++N   L +  Q I   ++      N+
Sbjct: 300 IASSDGILLNLIEDILTVARFEHE-KKENFKNTIVNVFNLGKCIQLIGAIINSYSKHFNV 358

Query: 668 RIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------- 717
           +++++ D    +      + R+ QI S +L+NA+  S  G TV L   + NG        
Sbjct: 359 KLEILMDSITQNLNVRTSQTRIHQILSNLLTNAIKASKNGQTVNL-ICKANGEPQTNHGI 417

Query: 718 ---DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +  F V + GS IP++  + +F  F  + N +     G GLGL+IV S +N  GG +
Sbjct: 418 LQQEIEFKVIDLGSGIPKNKQREIFAPFSQLHNVNENIYPGSGLGLNIVSSHVNSMGGTI 477

Query: 773 SISSS-DEG 780
           S+ S  D+G
Sbjct: 478 SLKSEIDKG 486


>gi|229172567|ref|ZP_04300126.1| hypothetical protein bcere0006_16790 [Bacillus cereus MM3]
 gi|228611038|gb|EEK68301.1| hypothetical protein bcere0006_16790 [Bacillus cereus MM3]
          Length = 288

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 131/242 (54%), Gaps = 13/242 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  ++L E  E  +K+ E+K   + ++S++LR+P+T++IG+ DLL  ++L S   +  Q 
Sbjct: 45  RMAKSLKESIENEKKSQEMKTEMISNISHDLRTPVTSLIGYADLL-GNQLHSNREECEQS 103

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +   S  L N V+D+L+   ++   ++L+ S + +   + ++       + + ++  
Sbjct: 104 VSILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPLLDDADMSF 163

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D +L   + D   ++++F  ++SN++ +   G  ++++ ++ + +    +KN G  
Sbjct: 164 RINGDKELHVEI-DVAVMVRLFENVISNSIMYGKDGKDILIQVSKRDMNAEIEIKNFGQC 222

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           IP++    VF +F    +RG++       G G+GL+I  S   LH G +++ S++ E V 
Sbjct: 223 IPDENLPYVFEKF----YRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKETVF 278

Query: 783 TI 784
           TI
Sbjct: 279 TI 280


>gi|119899384|ref|YP_934597.1| sensor for high-affinity potassium transport system [Azoarcus sp.
           BH72]
 gi|119671797|emb|CAL95711.1| probable sensor for high-affinity potassium transport system
           [Azoarcus sp. BH72]
          Length = 509

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 127/265 (47%), Gaps = 9/265 (3%)

Query: 532 PLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           PL + + +L  V    ++  ER    A+ + ++   +A+ ++NS +  +S+++R+PLT +
Sbjct: 236 PLESLRPLLEAVASLAAIALERLHFVAVAQASQFEAEAERLRNSILASISHDIRTPLTVL 295

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G  D L  S+ G L S++ +    I   +  L ++V+ +LD+A + AG ++L      L
Sbjct: 296 FGLADALALSE-GRLGSEEREAAHAIRDQAGRLHDMVDKLLDMARLQAGTVRLRKEWQPL 354

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++L      +   +  + + +   ++  L     D   L ++F  +L NA   S  G+ 
Sbjct: 355 DEILGAAIALLGDALRAHPVTLVQAAETPL--VAVDAVLLERVFCNLLDNAARCSPAGTP 412

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           + +  AR+    +  V+++G   P    +  F  F      G   GVGLGL+I  + +  
Sbjct: 413 ITVDLAREGDMLVVGVRDHGPGFPAG-GERAFELFERGRASGV-AGVGLGLAICRAVVEA 470

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           HGG +   ++ +G   +   +P  E
Sbjct: 471 HGGWIRAGNAADGGACVRFALPCGE 495


>gi|119186753|ref|XP_001243983.1| hypothetical protein CIMG_03424 [Coccidioides immitis RS]
          Length = 2341

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 31/252 (12%)

Query: 552  ERALTEKNEALRKADEI-----------------KNSFVQHVSYELRSPLTNIIGFTDLL 594
            +R+L +  EA +KA E                  K+ F+ ++S++LR+P+T +IG ++LL
Sbjct: 1848 KRSLAQAREAEQKAKEAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELL 1907

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   +L+ +Q  YVE I   +  LL L+NDILD + ++AG MK++   + L   + EV
Sbjct: 1908 KQT---NLDRQQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRQTIAEV 1964

Query: 655  KQSIATKMHENNIR-IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
             +++     +  +  I+ + D      V  D  RL QIF  +LSN+  F+ KGS TV  K
Sbjct: 1965 VRALRYTHRDRGLETIEDLDDIAPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAK 2024

Query: 712  AARDNGDFIFS---VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
             A ++   I     V + G  I  +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 2025 VAEEDETTIRVTCIVADTGIGISNEHLARLFRPF-SQADSSTARSYGGSGLGLSICKAII 2083

Query: 766  -NLHGGHVSISS 776
              + GG + + S
Sbjct: 2084 EEVLGGKIWLRS 2095


>gi|323694410|ref|ZP_08108581.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum
           WAL-14673]
 gi|323501491|gb|EGB17382.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum
           WAL-14673]
          Length = 801

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 22/264 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLN-- 603
           R +R L        KA+E K  F+  +S+++R+P+  I+G   +    L++   G+ N  
Sbjct: 386 RKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMASVARFVLQSEVKGTANLQ 445

Query: 604 --SKQSQY------VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              K   Y      +E I  SS  LL+L+NDILD++ +++G MK+    + L D +  +K
Sbjct: 446 CDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGKMKIANREMNLKDAIRNIK 505

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV---ILK 711
             I  +  E      V    ++G F   D  RL QI   +L NA+ ++ +   +   +  
Sbjct: 506 VMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLGNALKYTPEQGEIRLCVTA 565

Query: 712 AARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
              + G+ +  F + + G  + E+    +F+ F      G R   G GLGLSI    + L
Sbjct: 566 GKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSRIFEGTGLGLSISRKLVEL 625

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
             G +S  S     T    +IP K
Sbjct: 626 LNGTISAESEPSKGTVFTVKIPMK 649


>gi|319646652|ref|ZP_08000881.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|317391240|gb|EFV72038.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 455

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 7/208 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +N F+  V++ELR+P+T I G+TD+    KL      ++QY+  I   +  L  LV+D+ 
Sbjct: 233 RNDFLSSVAHELRTPITYIKGYTDVAMRDKLEP--QARNQYLSIIKEEADNLNTLVDDLF 290

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L  +     ++N   + L   + +  Q  A    E   RI V  D     +V  D  R 
Sbjct: 291 LLTKLKQPGFQINKKQVHLYTFVKKEIQKAAVAFSEK--RISVSFDIPTDLYVTVDEVRF 348

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +L+NA  +S   ST  + A++       +V + G  IPE+    +F RF  +  
Sbjct: 349 SQVISNLLNNARQYSDPESTAAVTASKLEDQVKITVADEGCGIPEEERDYIFERFYRIDK 408

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +   Q  G GLGL+IV+  + LHGG ++
Sbjct: 409 SRSRQTGGTGLGLAIVKEIVELHGGQIA 436


>gi|229084862|ref|ZP_04217117.1| hypothetical protein bcere0022_14890 [Bacillus cereus Rock3-44]
 gi|228698442|gb|EEL51172.1| hypothetical protein bcere0022_14890 [Bacillus cereus Rock3-44]
          Length = 346

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 124/236 (52%), Gaps = 10/236 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L++  E  +++ E+KN  + ++S++LR+P+T++IG+ DL++ SKL S   +  QY+  +
Sbjct: 106 SLSDSIEKEKESQEMKNEMIHNISHDLRTPVTSLIGYVDLVE-SKLHSNIEECDQYIAVL 164

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L N ++D+L+   ++   ++L    I +  L+ ++      ++ E  I    I 
Sbjct: 165 KRKSYELKNQIDDLLEYCHINYKEIQLQKEIIEVKPLVEQIMIDFVPQLDEEKIHF-YIE 223

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +      D + ++++   ++SN++ +   G +++++   +N +    +KN G  I  +
Sbjct: 224 CKQTVHIKVDIKLIIRLMQNVISNSIVYGKSGKSIVIEIVVENMNAQIKIKNYGPCISNE 283

Query: 734 MCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
               +F +F       NAH G   G G+GL+I +S   +H G +++ S+ E  T I
Sbjct: 284 DIPYIFEKFYRGEKSRNAHTG---GKGMGLAIAKSIAQIHEGDITVDSNKEETTFI 336


>gi|16329648|ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652132|dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1462

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 22/235 (9%)

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            A   A+  K  F+  +S+E+R+P+  +IG T+LL  +    LN +Q  YV+ I  S   L
Sbjct: 770  AAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMT---DLNLQQLDYVQTIRQSGETL 826

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
            L ++NDILD + ++A  + L      L  L+  V +         ++ +    D +  + 
Sbjct: 827  LTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPAR 886

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTV----------------ILKAARDNGDFIFSV 723
             + D+ RL QI S ++ NA+ F+ KG  V                IL     +    F++
Sbjct: 887  ILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNL 946

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ G  IP D    +F  F  V ++   +  G GLGL I +    + GG ++++S
Sbjct: 947  RDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTS 1001


>gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
 gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
          Length = 954

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 142/285 (49%), Gaps = 20/285 (7%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEK 558
           +T F+ ER+   G   ++S S+   ++ PL +A   +  V     ++++   AER L + 
Sbjct: 246 LTQFETERRRRDG--RIISVSI---TVSPLRDANERIIGVSTIERDISERKFAERELQKA 300

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             A  +A+  ++ F+ +VS+E+R+P+  IIG T   K +    L     +YVE  ++S+ 
Sbjct: 301 KAAAERANRARSEFLANVSHEIRTPMNAIIGMT---KLTLAEDLPEAVREYVETANSSAH 357

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+L+NDILD + ++AG   ++ S   L   ++   ++++ +     + + +  D ++ 
Sbjct: 358 TLLSLLNDILDFSKIEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDPRIP 417

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPED 733
              + D  RL QI + ++SNA+ F+ +G    S  +L+         F++ + G  I   
Sbjct: 418 EELIGDAIRLRQIITNLVSNAVKFTERGEVLLSVKLLRRFPREVRIRFTISDTGVGITPA 477

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             K +F  F        R   G GLGL+I    + L GG + ++S
Sbjct: 478 DQKRIFEPFTQVDSSSTRNFGGSGLGLTICHELLELMGGRLELNS 522


>gi|30265483|ref|NP_847860.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47531051|ref|YP_022400.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188302|ref|YP_031555.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|65317446|ref|ZP_00390405.1| COG5002: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165872528|ref|ZP_02217161.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167641431|ref|ZP_02399681.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170689184|ref|ZP_02880381.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|170708650|ref|ZP_02899089.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|177651823|ref|ZP_02934406.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227818234|ref|YP_002818243.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229602903|ref|YP_002869674.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
 gi|254687094|ref|ZP_05150952.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735140|ref|ZP_05192850.1| sensory box histidine kinase YycG [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742151|ref|ZP_05199838.1| sensory box histidine kinase YycG [Bacillus anthracis str. Kruger
           B]
 gi|254755939|ref|ZP_05207971.1| sensory box histidine kinase YycG [Bacillus anthracis str. Vollum]
 gi|30260161|gb|AAP29346.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47506199|gb|AAT34875.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182229|gb|AAT57605.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|164711751|gb|EDR17295.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167510606|gb|EDR86002.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170126432|gb|EDS95320.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|170666827|gb|EDT17593.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|172082527|gb|EDT67591.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227004751|gb|ACP14494.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229267311|gb|ACQ48948.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
          Length = 613

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVIQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|328948861|ref|YP_004366198.1| histidine kinase [Treponema succinifaciens DSM 2489]
 gi|328449185|gb|AEB14901.1| histidine kinase [Treponema succinifaciens DSM 2489]
          Length = 472

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 129/249 (51%), Gaps = 21/249 (8%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P   A+   +F ++TD +      T+  ++L+K ++I+  FV +VS+EL++P+T+I GFT
Sbjct: 217 PQEIAELAQSFNSMTDRI------TQNIQSLKKVEQIRKDFVANVSHELKTPVTSIKGFT 270

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV--DAGIMKLNYSTIVLND 649
           + L    +    + +  ++  I+     L+N++ D+L L+ +  D G+++      V  D
Sbjct: 271 ETLLDDGINEPETAK-HFLGIINTQCERLINIIEDLLTLSRLETDDGVLE-----TVKTD 324

Query: 650 LLNEVKQS---IATKMHENNIRIKVISDGKLGSFVADRQRLL-QIFSKILSNAMDFSSKG 705
           L+   K++   + +   E  IRI   S  K   F+     LL Q+ + ++ N++ +  + 
Sbjct: 325 LVQIAKKACSNLESAATEKQIRIN-FSSSKKEIFIKGNPGLLEQVITNLIDNSVKYCPEK 383

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
           S V    + ++G     V++NG+ IP++    +F RF  V      +  G GLGLSI   
Sbjct: 384 SIVFCSLSENSGKAKIIVEDNGNGIPDEYKDRIFERFYRVDKGRSREHGGTGLGLSIARH 443

Query: 764 FINLHGGHV 772
            +N+HGG +
Sbjct: 444 IVNIHGGTI 452


>gi|323137621|ref|ZP_08072698.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397247|gb|EFX99771.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 501

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 8/233 (3%)

Query: 555 LTEKNE--ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +TEK    AL + D  K+ F+  +++ELR+PL  I     +L+  +     +K+ +    
Sbjct: 248 VTEKKRIHALCETDRRKDEFLATLAHELRNPLAPIKNAVHVLRLLEDDDSATKEKRRAAL 307

Query: 613 ISASSTI--LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             A   +  +  LV+D+L++  +  G ++L  +   L  +L +       ++   + R+ 
Sbjct: 308 ERAGRQVDHMARLVDDLLEITRISHGKVELRKARTDLAAILTQAIDLSQPQIQAGSHRLA 367

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V    +      D  RL Q+F+ +++NA  ++  G  + + AARD  + + +V++NG  I
Sbjct: 368 VDLSTEPLQIDGDPVRLAQVFTNLINNAARYTDAGGRIEIAAARDGEEAVVTVRDNGIGI 427

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           P     S+F  F  V    R    G+G+GL++  S + LHGG +   S  EGV
Sbjct: 428 PRQQLSSIFEMFAQVEPTCRRAPGGIGVGLALARSVVQLHGGRIEARS--EGV 478


>gi|317498208|ref|ZP_07956509.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894563|gb|EFV16744.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 939

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 135/271 (49%), Gaps = 27/271 (9%)

Query: 537 QTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +L  ++VT   +AE    +AL E   +   A+  K  F+ ++S+++R+P+  I+G T 
Sbjct: 394 KVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTA 453

Query: 593 LLKTSKLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +      G+    Q + +E    I+ SS  LL L+N++LD+A +++G M L      L+D
Sbjct: 454 IA-----GANIESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSD 508

Query: 650 LLNEV----KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++ +    K  +    H  +I I  I      +   D  R+ Q+F  ++SNA+ ++  G
Sbjct: 509 LVDNLITITKPVLDEHKHNFDIHINHIEH---EAVCGDSLRIQQVFVNLMSNAIKYTPDG 565

Query: 706 STVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLG 757
             +            + G + F++++NG  +  +  K +F+ F  ++ HR  R +G GLG
Sbjct: 566 GNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTGLG 625

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++I  + +NL  G + + S+    T I   I
Sbjct: 626 MAISRNIVNLMNGTIKVDSTLHKGTKITVTI 656


>gi|283834019|ref|ZP_06353760.1| sensor histidine kinase KdpD [Citrobacter youngae ATCC 29220]
 gi|291070157|gb|EFE08266.1| sensor histidine kinase KdpD [Citrobacter youngae ATCC 29220]
          Length = 894

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 146/352 (41%), Gaps = 45/352 (12%)

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L   E  +L+P TH + +             WD  A    SFD  + +  GT  L     
Sbjct: 550 LLPDEHGKLAPLTHQQGMTP-----------WD-DAIAQWSFDKGQPAGAGTDTLPG--- 594

Query: 526 LEYSIIPL----------------------PNAQTML-TFVNVTDSVRAERALTEKNEAL 562
           + Y I+PL                      P  Q +L TF  +  S      LT   E  
Sbjct: 595 VPYQILPLKSANKTHGLLVVEPGNLRQLMIPEQQRLLETFTLLVASALERLTLTASEEQA 654

Query: 563 RKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           R A E   I+N+ +  +S++LR+PLT + G  ++L T  L S  S  ++    I      
Sbjct: 655 RFASERESIRNALLAALSHDLRTPLTVLFGQAEIL-TLDLASEGSPHARQASEIRQHVLN 713

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
              LVN++LD+A + +G   L    + L +++    Q +   +   +  I +     L  
Sbjct: 714 TTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGL---SAPINLSLPEPLTL 770

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D     ++   +L NA+ ++   + + + A+ D       V +NG  IP  M + VF
Sbjct: 771 IHVDGPLFERVLINLLENAVKYAGPQAQIGIDASVDGEHLQLDVWDNGPGIPSGMEQRVF 830

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++F          GVGLGL+I ++ +++HGG +S  +  +G       +P +
Sbjct: 831 DKFSRGNKESSVPGVGLGLAICQAIVDVHGGTISAHNRAQGGACFRVTLPQE 882


>gi|220913623|ref|YP_002488932.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219860501|gb|ACL40843.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 553

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 11/239 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ALT+   AL +A   K+ FV  VS+ELR+PLT+I+G+  +    +   L+ +    +E  
Sbjct: 310 ALTDVT-ALVEALSAKDQFVASVSHELRTPLTSILGYLSIAMDEE--GLDPELEHCLEVA 366

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  LLNLV D+L   T+ +G + +      L ++  +   +   +     + + + +
Sbjct: 367 KRNAERLLNLVADLL---TIASGTLTVRPRQADLAEVAAQSVDAAQPRAASGGVTLSLET 423

Query: 674 DGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +G   G F  D  RL Q    ++SNA+ ++ +G  V ++   ++G  +  V + G  + +
Sbjct: 424 EGPAPGRF--DPDRLGQAIDNLVSNAIKYTPRGGVVTVRVRTEDGRLVCEVADTGVGMTD 481

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + F RF   + AH     G GLGL+I  S I  H G V+++SS    TT    +P
Sbjct: 482 QDLANAFTRFFRTATAHSSAIPGAGLGLAITRSIIENHRGSVTLASSHGEGTTATLTLP 540


>gi|187934998|ref|YP_001887259.1| two-component sensor kinase [Clostridium botulinum B str. Eklund
           17B]
 gi|187723151|gb|ACD24372.1| two-component sensor kinase [Clostridium botulinum B str. Eklund
           17B]
          Length = 507

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 124/239 (51%), Gaps = 4/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + EK +A R A++ K   + +VS++LR+PLT+I+G+  L+K  +  +   + ++Y+  
Sbjct: 267 KEIGEKIQAERDAEKTKTDLITNVSHDLRTPLTSIMGYIGLVKEDRYKN-KEEMNEYLNI 325

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  L  L+ D+ +   ++   MKL    + L +LL+++ + +   + EN++ I   
Sbjct: 326 AYNKAQKLNILIEDLFEYTKLNNNGMKLTKEKVNLCELLSQLIEEMTPIVDENSVSINKK 385

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D        D  ++L++F  ++ NA+ +S K   +I+   + +    F  +N G  I +
Sbjct: 386 FDIDRAYVFIDIVKMLRVFENLIMNAVKYSIKPGEIIIGLYQKDDYVTFVCRNKGEYISK 445

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-TINCRI 788
           +    VF+RF  V  +      G GLGL+I ++ INLH G +     D+ ++  +N +I
Sbjct: 446 EKLDKVFDRFYRVDESRNTTTGGSGLGLAISKNIINLHEGKIWAECIDDNISFYVNLKI 504


>gi|56964475|ref|YP_176206.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56910718|dbj|BAD65245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 590

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 12/236 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK--QSQYVEYISASSTIL 620
           +K ++++  FV +VS+EL++P+T+I GF + L     G+++      Q+ E I   S  L
Sbjct: 357 KKLEQVRKDFVANVSHELKTPVTSIKGFAETLLD---GAIDDPVLSKQFTEIIWKESDRL 413

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+L+L+ ++    KL+   + L D+  +V + +  K  E  + + +   G     
Sbjct: 414 QMLIVDLLELSKIENAQFKLDLEDMSLKDITEDVFELVRGKAEEKGMHLHIQEQGS-SVI 472

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             D QRL Q+   ++SNA+ ++  G   TV LK  +D    +  V++ G  I       +
Sbjct: 473 EGDWQRLKQVVLNLVSNAISYTPSGGHVTVALKEQKDA--VVLKVQDTGIGIDPKETLRI 530

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F RF  V  A      G GLGL+IV+     H   + + S +   T  +   P K+
Sbjct: 531 FERFYRVDRARSRNSGGTGLGLAIVKHLAEAHHAKIEVQSEEGKGTEFSLTFPKKQ 586


>gi|16079962|ref|NP_390788.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310851|ref|ZP_03592698.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315177|ref|ZP_03596982.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320094|ref|ZP_03601388.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324376|ref|ZP_03605670.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|130130|sp|P23545|PHOR_BACSU RecName: Full=Alkaline phosphatase synthesis sensor protein phoR
 gi|143331|gb|AAA22663.1| alkaline phosphatase regulatory protein [Bacillus subtilis]
 gi|2293271|gb|AAC00349.1| signal transduction protein kinase [Bacillus subtilis]
 gi|2635375|emb|CAB14870.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 579

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 7/218 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K ++++  FV +VS+EL++P+T+I GFT+ L     G++  K+  S+++  I   S  L
Sbjct: 345 KKLEQMRKDFVANVSHELKTPITSIKGFTETLLD---GAMEDKEALSEFLSIILKESERL 401

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV D+LDL+ ++     L+  T     +L E++  +  K  E  I + +         
Sbjct: 402 QSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPKDPQYV 461

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+F  +++NA+ ++ +G +V +       D    V ++G  I ++    +F 
Sbjct: 462 SGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEIPRIFE 521

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF  V         G GLGL+IV+  I  H G + ++S
Sbjct: 522 RFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559


>gi|220932996|ref|YP_002509904.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
 gi|219994306|gb|ACL70909.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
          Length = 594

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 114/217 (52%), Gaps = 3/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ ++++  FV +VS+EL++PLT+IIG+ D +  + +   ++   +++  I   +  L 
Sbjct: 363 LRRLEQLRKEFVANVSHELKTPLTSIIGYIDTIIDNDIKD-DTTIKRFLSIIKDEADRLY 421

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+LDL+ ++A   ++      LN ++ ++   +  +    +I +K+    KL    
Sbjct: 422 LLIKDLLDLSKLEAKRGEVILQPGDLNKIVKKIYLMLQEQAESKDIDLKLDIKEKLPFVY 481

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
              +++ Q+   ++ N + ++  G  VIL+A  +N   +  V++NG  IPE+    +F R
Sbjct: 482 LIPEQIEQVLINLVDNGIKYTEPGGRVILRAYEENNRVVVEVEDNGIGIPEEDQGRIFER 541

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F  V  A      G G+GLSIV+  I  H   + + S
Sbjct: 542 FYRVDKARSRSMGGTGIGLSIVKHIIKNHDSEIKVES 578


>gi|326390091|ref|ZP_08211653.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993956|gb|EGD52386.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 124/239 (51%), Gaps = 15/239 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L + +E+KN F+ ++S+EL++PLT+I GF   +    L   NS+  +Y+  I   +  
Sbjct: 231 EELGQLEEMKNEFISNISHELKTPLTSIKGFA--ITAMDLVEKNSELYEYLNIIDEETDR 288

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVISDGKLG 678
           L  LV+++LD + ++   +KL++  + L+ L   ++ ++A  + H +N  + +I   K+ 
Sbjct: 289 LSRLVDELLDFSKIELNKIKLSFEEVELDKL---IEDTVAILRPHASNYGVNLICKKKID 345

Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             V   D  RL Q+   I+ N +   S+G  V +     +   +  +++ G  IP++  K
Sbjct: 346 RVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAVIRIEDQGQGIPQEEIK 405

Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F++F    +RG+     G GLGL+I +  I  H G +++ S     +     +P K+
Sbjct: 406 YIFDKF----YRGKNNKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELPLKD 460


>gi|298241956|ref|ZP_06965763.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555010|gb|EFH88874.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 615

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 125/253 (49%), Gaps = 36/253 (14%)

Query: 553 RALTEKNE------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R L E+ E       L +   + N F+   S+ELR+PLT I+G   L++  +L +L  +Q
Sbjct: 356 RCLHEQTETETRTLVLHEVQHLSNDFLTLASHELRTPLTGIMGNLQLVQ-RRLDTLKCQQ 414

Query: 607 S-QYVEYI----------SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           + Q  E+I          S S+ +L  ++ND++D A +    + L+ +   L+ LL   K
Sbjct: 415 TDQVSEHITRAQQPLTSASQSAWLLQRMINDLIDDARIQTNQLALSMTPCDLSTLL---K 471

Query: 656 QSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++IA + H   E+ I ++ I   +    +AD QR+ Q+ +  L+NA+  +     V +  
Sbjct: 472 EAIAKQQHDRPEHAIILEKIPTEQAVPILADVQRITQVLTTYLTNALRSAPAERPVSVAL 531

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV--------GLGLSIVESF 764
             ++     SV + G  IP +    +++RF    HRG+   +        GLGL + +S 
Sbjct: 532 TVEDTVARVSVHDEGPGIPAEEQAHLWDRF----HRGKGSSIQHELDLSFGLGLYLCKSL 587

Query: 765 INLHGGHVSISSS 777
           I LH GHV + S+
Sbjct: 588 IELHQGHVGVQSA 600


>gi|289664296|ref|ZP_06485877.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            campestris pv. vasculorum NCPPB702]
          Length = 1191

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 17/239 (7%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQL 906

Query: 668  RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSV 723
                  D  L   +  D  R+ QI   +L NA+ F+ +GS  +  AA            V
Sbjct: 907  AFHCALDDALPPALHGDASRVQQILLNLLFNAIKFTERGSVHLRVAALPEHTQQGIRVEV 966

Query: 724  KNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V++ S
Sbjct: 967  RDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGSVTVIS 1022


>gi|270263222|ref|ZP_06191492.1| aerobic respiration control sensor protein ArcB [Serratia odorifera
           4Rx13]
 gi|270042910|gb|EFA16004.1| aerobic respiration control sensor protein ArcB [Serratia odorifera
           4Rx13]
          Length = 815

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  +    LN +Q +Y
Sbjct: 268 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLNDEQLKY 324

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   +     L +++           ++ 
Sbjct: 325 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFLADLENLSGLLAQPKGLQF 384

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +     L    + D  RL QI   ++ NA+ F+  G  V+     +    +F V+++G 
Sbjct: 385 VMEPQSPLPQQIITDGTRLRQILWNLIGNAVKFTPHGQIVVRVRREEQDRLVFEVEDSGM 444

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            IP+D    +F  +  V + H G+   G G+GL++ +      GG +++SS
Sbjct: 445 GIPQDEQDKIFAMYYQVKDQHGGRPATGTGIGLAVSKRLAQSMGGDITVSS 495


>gi|225573641|ref|ZP_03782396.1| hypothetical protein RUMHYD_01835 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039009|gb|EEG49255.1| hypothetical protein RUMHYD_01835 [Blautia hydrogenotrophica DSM
           10507]
          Length = 882

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 134/246 (54%), Gaps = 8/246 (3%)

Query: 552 ERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQ 608
           ER   E+ EA  L K ++++   ++ +S++LR+PLT+I G  ++LL  S+     +K+  
Sbjct: 635 ERTAREREEAAVLAKNEQLRADLLRAISHDLRTPLTSISGNASNLLFNSEDFDKETKKGL 694

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I   S  L+NLV ++L ++ ++ G M L  S  +++++++E  Q +  +  E+ I 
Sbjct: 695 YKD-IYEDSLWLINLVENLLSVSRIEEGRMNLRLSAELMDEVISEALQHVNRRSIEHVIV 753

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++   D  L     D + ++Q+   I+ NA+ ++ +GS + +   +        + ++G 
Sbjct: 754 VENSDDILLARI--DARLIVQVVINIVDNAIKYTPRGSHITISTVQTGQIITVKISDDGP 811

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + +++   VF+ F + +++    RR +GLGLS+  S I+ HGG +++  +    T  + 
Sbjct: 812 GMDDEVKSHVFDMFYTGSNKVADSRRSLGLGLSLCRSIIHAHGGEITVKDNQPQGTVFSF 871

Query: 787 RIPSKE 792
            +P+ E
Sbjct: 872 TLPAGE 877


>gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1313

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 18/235 (7%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            RA TE +EA R     K+ F+  +S+E+R+P+  +IG T LL  +    L+ +Q  +V  
Sbjct: 783  RAKTEADEASRA----KSDFLASMSHEIRTPMNGVIGMTSLLMET---DLSPEQRDFVNT 835

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
            I  S   LL ++NDILD + +++G M L +    L   L E     A +    ++ +   
Sbjct: 836  IRTSGEALLTIINDILDFSKIESGKMDLEHLPFELATCLEESLDLFALQASAKHLELAYH 895

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAARDNGDFIFSV 723
            I+       + D  RL QI   +++NA+ F+S GS  I        + A        F V
Sbjct: 896  IAPDVPEWIIGDITRLRQIVVNLVNNAVKFTSAGSIAIEVRRRPPTVPANLKRFPLEFVV 955

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ G  IP +    +F  F  V ++   +  G GLGL+I +    L GG + + S
Sbjct: 956  RDTGIGIPAERLDRLFKAFSQVDSSTTRKYGGTGLGLAICQRLSILMGGGIRVES 1010


>gi|190568905|ref|ZP_03021807.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
 gi|190559972|gb|EDV13955.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
          Length = 613

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVIQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|38489898|gb|AAR21569.1| putative ethylene receptor [Solanum tuberosum]
          Length = 635

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 128/268 (47%), Gaps = 36/268 (13%)

Query: 547 DSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           DS+RA   L E+N AL  A +        +N F+  +++E+R+P+  +I    LL  +  
Sbjct: 314 DSMRAHDQLMEQNNALDDARQEAEMAIRARNDFLAVMNHEMRTPMHAVIALCSLLLET-- 371

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E I  SS +L  L+ND+LDL+ ++ GI++L   T  L+ +L E    I 
Sbjct: 372 -DLTPEQRVMIETILKSSNLLATLINDVLDLSRLEDGILELENGTFNLHGILREAVNLIK 430

Query: 660 --TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILK 711
               + + +I + +  D  + + V D +RL+QI   +  NA+ F+ +G      S    +
Sbjct: 431 PIASLKKLSITLALALDLPILA-VGDAKRLIQILLNVAGNAVKFTKEGHISIEASVAKPE 489

Query: 712 AARD-----------NGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
            ARD           +G F     V++ G  I P+D+   VF +F        R   G G
Sbjct: 490 YARDCHPPEMFPMPSDGQFYLRVQVRDTGCGISPQDI-PLVFTKFAEARPTSNRSTGGEG 548

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTT 783
           LGL+I   FI L  G++ I S   G  T
Sbjct: 549 LGLAICRRFIQLMKGNIWIESEGSGKGT 576


>gi|323492021|ref|ZP_08097186.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
 gi|323313750|gb|EGA66849.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
          Length = 1128

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++NE L+ A+++K+ F+   S+ELR+PL  ++G  + L +   G + ++    ++ 
Sbjct: 444 KLIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVGIAEALASGANGPITAEHKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--K 670
           I +S   L  LV+D+LD   +  G + +  S + L+     V +  +  +    IRI  +
Sbjct: 504 IISSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLSGSTRLVLELSSHLLGNKPIRIINQ 563

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V S+    S  AD QRL Q+   ++ NA+ ++S+G  VI     D+      V + G  I
Sbjct: 564 VPSEPVWVS--ADPQRLEQVLYNLVGNAIKYTSEGKIVISANVVDD-QIRVQVVDTGQGI 620

Query: 731 PEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           P D  + +F   +   S++ R  R+G GLGLSI    I L  G + +SS     TT +  
Sbjct: 621 PADQLEHIFEPLIQAGSDSSR-YRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFT 679

Query: 788 IP 789
           +P
Sbjct: 680 LP 681


>gi|319781457|ref|YP_004140933.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167345|gb|ADV10883.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 763

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   RAE +L    E    A + K+ F+  VS+E+R+P+  I+G   LL  +   SL+
Sbjct: 230 DITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLLADT---SLS 286

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YV  +S S++ LL L+ D+LD + ++AG        + + ++ + + + +A +  
Sbjct: 287 PEQQTYVGAVSTSASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADNIIELLAARAF 346

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI 720
             +I +    +  +   + AD  ++ Q+   ++ NA+ F+  G  +  I +A  +  D I
Sbjct: 347 AKDIGLGCHVEPDVPQLITADPGKVRQVLLNLIGNAIKFTDSGGVLVSIARARTETSDRI 406

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F++ + G  + +   + +F  F        R   G GLGL+I    +   GG +S+SS
Sbjct: 407 CFTIADTGPGLHDADLERIFEEFEQADGTSTRTHGGAGLGLAISRRLVAAMGGTISVSS 465


>gi|283851290|ref|ZP_06368572.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573240|gb|EFC21218.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 656

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 25/247 (10%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R +TE  E  R+A+  K+ F+ ++S+E+R+PL  I+G   L   +++ SL+     Y+
Sbjct: 273 ATRKVTE--ERARQANRAKSEFLANMSHEIRTPLNGIMGMVHL---ARMQSLDRTTLSYL 327

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E   AS+  LL +VND+LD+A ++AG ++L        DL  E + ++ T +        
Sbjct: 328 ELADASAQHLLGIVNDVLDIAKMEAGKIRLARQAF---DLRREFEATL-TPLRIAAQGKG 383

Query: 671 VISDGKLGSFVADR-----QRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD--F 719
           V+ D  +   VAD       RL Q+ + ++ NA+ F+ +G   +      AA + G    
Sbjct: 384 VVLDHAVAPDVADHVVGDVGRLRQVLTNLVGNAVKFTGQGRIDVRVDREGAADEAGGQRL 443

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
             ++++ G  +P D  + +F  F   AH        G GLGLSI +  + L GG +   S
Sbjct: 444 RVTIRDTGIGVPADRLERIFESF-EQAHTSAHALYGGTGLGLSIAKRLVELMGGDIRAES 502

Query: 777 SD-EGVT 782
            + EG T
Sbjct: 503 REGEGST 509


>gi|260769448|ref|ZP_05878381.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Vibrio furnissii CIP 102972]
 gi|260614786|gb|EEX39972.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Vibrio furnissii CIP 102972]
          Length = 1190

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 21/241 (8%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASST 618
           E L +A + K +F+  +S+E+ +P+  IIG  ++ +K S  G  +    + V Y SA + 
Sbjct: 691 EQLTQASKAKTTFLATMSHEIHTPMNAIIGLLEIAIKKSHQGHFDVPALE-VAYDSAHN- 748

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ DILD+  +++G + +    + L DL+  + +       +  I++ V  D  + 
Sbjct: 749 -LQVLIGDILDIVRIESGHISIAPQRVNLRDLVESITRVFDGLARQKYIQLDVHIDPTIT 807

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGD----FIFS 722
             V  D  RL QI S +LSNA+ F+ +G   +                  G     + F 
Sbjct: 808 QDVYVDPTRLKQILSNLLSNAIKFTDQGGVTVTVTNHGPSETTFTEPEQQGSIAERYSFV 867

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           VK+ G+ I E+  + +F  FV       RRG GLGLSIV+S  N+ GG +++  S+ GV 
Sbjct: 868 VKDTGTGISEEAQQRLFAPFVQVHSDVDRRGAGLGLSIVQSLCNMMGGTIAL-CSEVGVG 926

Query: 783 T 783
           T
Sbjct: 927 T 927


>gi|262045792|ref|ZP_06018756.1| histidine kinase [Lactobacillus crispatus MV-3A-US]
 gi|260573751|gb|EEX30307.1| histidine kinase [Lactobacillus crispatus MV-3A-US]
          Length = 484

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 16/238 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + NE ++  +E ++ F+   ++E+R+PLT I G  + L+   +   +  +S  +  
Sbjct: 238 QALKQSNEEVKAQEERRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEDSKPKS--IAL 295

Query: 613 ISASSTILLNLVNDILDLATVDAG---IMKLNY-STIVLNDLLNEVKQSIATKMHENNIR 668
           +   +  L+ LVN+ LD   +      ++K N+ +TI+L+DL +++KQ+ ATK    N  
Sbjct: 296 MQRETKRLIRLVNENLDYEKIRNNQIMLVKTNFNATIILHDLKSQLKQN-ATKA---NDE 351

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V +  +L  + ADR R  Q+   ++ NA+ F+  G  +I+   R       SVK+NG 
Sbjct: 352 LVVEAPDQLPIY-ADRDRFTQVMVNLVQNAIQFTHDGK-IIISGKRIEHGTQLSVKDNGI 409

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHV-SISSSDEGVT 782
            + ++  K +F RF        R G    GLGL+IV S I  HGG V + S+  +G T
Sbjct: 410 GMSKNQTKYIFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVEAFSAPGKGST 467


>gi|303317536|ref|XP_003068770.1| Histidine Kinase A (phosphoacceptor) domain containing protein
            [Coccidioides posadasii C735 delta SOWgp]
 gi|240108451|gb|EER26625.1| Histidine Kinase A (phosphoacceptor) domain containing protein
            [Coccidioides posadasii C735 delta SOWgp]
          Length = 2340

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 31/252 (12%)

Query: 552  ERALTEKNEALRKADEI-----------------KNSFVQHVSYELRSPLTNIIGFTDLL 594
            +R+L +  EA +KA E                  K+ F+ ++S++LR+P+T +IG ++LL
Sbjct: 1847 KRSLAQAREAEQKAKEAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELL 1906

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            K +   +L+ +Q  YVE I   +  LL L+NDILD + ++AG MK++   + L   + EV
Sbjct: 1907 KQT---NLDRQQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRQTIAEV 1963

Query: 655  KQSIATKMHENNIR-IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
             +++     +  +  I+ + D      V  D  RL QIF  +LSN+  F+ KGS TV  K
Sbjct: 1964 VRALRYTHRDRGLETIEDLDDIAPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAK 2023

Query: 712  AARDNGDFIFS---VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI 765
             A ++   I     V + G  I  +    +F  F S A     R   G GLGLSI ++ I
Sbjct: 2024 VAEEDETTIRVTCIVADTGIGISNEHLARLFRPF-SQADSSTARSYGGSGLGLSICKAII 2082

Query: 766  -NLHGGHVSISS 776
              + GG + + S
Sbjct: 2083 EEVLGGKIWLRS 2094


>gi|229101411|ref|ZP_04232154.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
 gi|228681987|gb|EEL36121.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
          Length = 428

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           ++ F+  VS+ELR+PLT + G+ D+ LK S   +   ++ +Y+  I   S  + NLV D+
Sbjct: 200 RSEFLASVSHELRTPLTYVRGYADIALKDS---TPPEQRLRYLSIIKDESDYITNLVQDL 256

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
             LA ++     +    + L+  L  + + +     E +I++       L   + D QR 
Sbjct: 257 FSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERHIKVSFTCPPTLLVNL-DEQRF 315

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+   IL+NA   S + S + +    +      +++++G  IP +    +F+RF  V  
Sbjct: 316 EQVIVNILNNAYRHSKEHSHINISVTEEYKHISITIEDDGEGIPPEDLPHIFDRFYRVDK 375

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           A      G GLGLSIV+  + LHGG++++ S  +  +     +PS
Sbjct: 376 ARTRSTGGTGLGLSIVKEIVELHGGNITVISEVDHGSCFTISLPS 420


>gi|229165595|ref|ZP_04293369.1| hypothetical protein bcere0007_5760 [Bacillus cereus AH621]
 gi|228617878|gb|EEK74929.1| hypothetical protein bcere0007_5760 [Bacillus cereus AH621]
          Length = 421

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+    K  +   ++ +Y+  I   S  + NLV D+ 
Sbjct: 200 RSEFLASVAHELRTPLTYVRGYADI--ALKENTPPEQRLRYLSIIKDESDYITNLVQDLF 257

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +    + L+  L  + + I     E  I++       L     D QR  
Sbjct: 258 SLAQMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSL-LVKLDEQRFE 316

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+ + IL+NA   S +   + +    ++      +K+ G  IP +    +F+RF  V  A
Sbjct: 317 QVMANILNNAYRHSKEHYHINISVTEEHKHISIKIKDKGEGIPPEDLPHIFDRFYRVDKA 376

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 377 RSRATGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLPS 420


>gi|270308800|ref|YP_003330858.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
 gi|270154692|gb|ACZ62530.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
          Length = 392

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 9/222 (4%)

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA--SSTILLNL-VNDI 627
           +F++ + +EL++PLT+      +L TS+L S N K+     YI    +    LNL V+++
Sbjct: 171 TFMRALVHELKTPLTS------MLATSELLSKNLKEEPNHSYIKCLYAGIQDLNLRVDEL 224

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD+A  + G+++L    + + +LL +V++ I      N  ++ +     L   VAD +RL
Sbjct: 225 LDIARGEVGLLRLECEPLNIYELLKDVEEIIRPVFESNAQKLTISLQNSLPVVVADYKRL 284

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +L NA  ++  G  + L AA  N   +  VK+NG  +      ++F  +  +  
Sbjct: 285 KQVILNLLDNATKYTPLGGDIRLSAAASNKYLVIEVKDNGKGMSPKETGALFKLYSRSNK 344

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +G   G+G+GL++ +  ++LH G +++ S     +T    IP
Sbjct: 345 KGSPSGLGIGLALSKMIVDLHEGEITVKSKLGEGSTFTFSIP 386


>gi|149180956|ref|ZP_01859457.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148851240|gb|EDL65389.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 607

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 10/231 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K D  +  FV +VS+ELR+PLT +  + + L     G+   ++   +++      +  ++
Sbjct: 372 KIDMERRDFVSNVSHELRTPLTTMRSYLEALAE---GAWQDEEIAPRFLSVTQDETERMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+L L+ +D+   + N   I      +++        ++N    + +   K   FV
Sbjct: 429 RLVNDLLQLSKMDSKDYRFNKEWIEFVGFFHQIIDRFEMSKNQNVTFKRQLP--KTALFV 486

Query: 682 A-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D+ +L Q+   I+SNA+ +S +G  +       +   + SV + G  IP+D    +F 
Sbjct: 487 EIDKDKLTQVLDNIISNALKYSPEGGLIAFNVVEKDKMIVVSVSDQGLGIPQDNLSKIFE 546

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A   Q  G GLGL+I +  I+ HGG++   S +   TTI+  +P
Sbjct: 547 RFYRVDKARSRQMGGTGLGLAIAKEMISAHGGNIWAESKEGKGTTISFSLP 597


>gi|52079559|ref|YP_078350.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52784923|ref|YP_090752.1| hypothetical protein BLi01151 [Bacillus licheniformis ATCC 14580]
 gi|52002770|gb|AAU22712.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347425|gb|AAU40059.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 455

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 7/208 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +N F+  V++ELR+P+T I G+TD+    KL      ++QY+  I   +  L  LV+D+ 
Sbjct: 233 RNDFLSSVAHELRTPITYIKGYTDVAMRDKLEP--QARNQYLSIIKEEADNLNTLVDDLF 290

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L  +     ++N   + L   + +  Q  A    E   RI V  D     +V  D  R 
Sbjct: 291 LLTKLKQPGFQINKKQVHLYTFVKKEIQKAAVAFSEK--RISVSFDIPTDLYVTVDEVRF 348

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+ S +L+NA  +S   ST  + A++       +V + G  IPE+    +F RF  +  
Sbjct: 349 SQVISNLLNNARQYSDPESTAAVTASKLEDQVKITVADEGCGIPEEERDYIFERFYRIDK 408

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +   Q  G GLGL+IV+  + LHGG ++
Sbjct: 409 SRSRQTGGTGLGLAIVKEIVELHGGQIA 436


>gi|219667713|ref|YP_002458148.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537973|gb|ACL19712.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 377

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 122/238 (51%), Gaps = 7/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ +A  +A++ KN  V ++++++++PLT++IG+  LL  +       ++++YV    
Sbjct: 143 LEKQKKAALEAEQRKNDLVVYLAHDIKTPLTSVIGYLSLLDEAP-DMPPEQKAKYVGITL 201

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
             +  L  L+N+  ++   +   + LN   I L  +L ++       +     ++ V + 
Sbjct: 202 EKAYRLEELINEFFEITRFNLQTIVLNKEKINLQFMLQQLADEFYPMLAPQAKQVSVNVP 261

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           DG   +   D  +L ++F+ IL NA+ +S + S + + A + +   + +  N G  IP+ 
Sbjct: 262 DGL--TLWGDADKLARVFNNILKNAIAYSYENSVIDIAAGQQDKTMVITFTNQGDPIPQK 319

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +++F +F  + +A      G GLGL+I +  +  H G +S+ S+ E  TT   +IP
Sbjct: 320 KLETIFEKFYRLDSARSTNTGGAGLGLAIAQEIVKAHDGTISVESNPEN-TTFTVKIP 376


>gi|302670202|ref|YP_003830162.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302394675|gb|ADL33580.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1015

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 119/224 (53%), Gaps = 16/224 (7%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY---ISASSTI 619
           R+A E K++F+ ++S+E+R+P+  ++G  +++         S+  Q +EY   + ++   
Sbjct: 389 REASEAKSAFLSNMSHEIRTPINAVLGLNEMIVR------ESEDPQILEYANSVKSAGNS 442

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL +VNDILD + ++AG M +      L+  +N++   IA K  + ++ +K   D  L +
Sbjct: 443 LLGIVNDILDFSKIEAGKMDILPVEYHLSSTINDLVNLIAVKAEDKHLELKFNIDKTLPT 502

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
             + D  R+ Q  + IL+NA+ ++ KGS  +  + R +G+      F V + G  I E+ 
Sbjct: 503 QLIGDEIRIKQCVTNILTNAVKYTEKGSVSLNISYRKDGEDSIYLRFQVIDTGIGIKEED 562

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + +++ F  +         G GLG+SIV++ + L G  + + S
Sbjct: 563 LEKLYSPFERIEETRNRSIEGTGLGMSIVKNLLALMGSRLEVKS 606


>gi|255946519|ref|XP_002564027.1| Pc20g15550 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588762|emb|CAP86884.1| Pc20g15550 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 685

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 127/253 (50%), Gaps = 14/253 (5%)

Query: 542 FVNVTDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTN-IIGFTDLLKTSKL 599
           FV VT  +   RA   +  +A  ++ + K+ F+ ++S+ELR+P+   ++  T LL+T   
Sbjct: 276 FVKVTRDMTERRATQARLIDAFEESAKSKSDFLANMSHELRTPMNGMLLALTMLLRTE-- 333

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q ++   +  S++ILL ++ND+LD + + +G   LN   + + ++++ V ++  
Sbjct: 334 --LTDEQREFGCILEDSTSILLQVINDVLDYSKLSSGSFPLNVDVVNIPNVISAVVRNCQ 391

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARD 715
           + +      +  +S+G   S   D  R  Q+   +++NA+ F+  G   +        +D
Sbjct: 392 SALKPGVQIMGGVSEGFPPSLKGDPLRFRQVLQNMVTNAVKFTESGHVRVHATYAIDEKD 451

Query: 716 NGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
              F+ S  V + G  +PED   ++F  F   A    ++  G GLGLSI +S   L  G 
Sbjct: 452 PDMFVISTQVVDTGIGVPEDATNTLFTPFTRFADTAAKKYQGTGLGLSICKSLAELMDGT 511

Query: 772 VSISSSDEGVTTI 784
           V   ++ +G  ++
Sbjct: 512 VGFHANPDGPGSV 524


>gi|167574777|ref|ZP_02367651.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           oklahomensis C6786]
          Length = 1138

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 4/214 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ +V  +S+ELR+PL +I+G+T LL  ++   L   +   V  I  S   LL LV
Sbjct: 676 ANRAKSRYVSGLSHELRTPLNSILGYTQLLLQAR-EELTPMRYNAVRTIHRSGEHLLALV 734

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           + +LD+A ++AG ++LN + I L D +  +   +  +  E  +   V + G+L + V   
Sbjct: 735 DGLLDIARIEAGKLQLNIAKISLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRTD 794

Query: 685 QRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           Q+ + QI + ++ NA+ F+S G T+ L+ +       F V + G  IP    + +F  F 
Sbjct: 795 QKCMSQILTNLIGNAIRFTSSG-TITLRVSHVLDTLKFEVIDTGPGIPPAEMERLFLPFE 853

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              A      G GLGL+I        GG + + S
Sbjct: 854 RGEAAHAYDHGAGLGLTICRLLTQALGGSLEVDS 887


>gi|148827359|ref|YP_001292112.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae PittGG]
 gi|148718601|gb|ABQ99728.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae PittGG]
          Length = 598

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|144901017|emb|CAM77881.1| sensor protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 906

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 136/274 (49%), Gaps = 12/274 (4%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D V+E     L  A  ++ +    ++  AE  L   NE L + D +K+ F+  V++ELR+
Sbjct: 635 DEVMEI----LDEASQVIAYSQRLEAATAE--LKAANERLTELDRMKDDFISTVTHELRT 688

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT+I  F+++L  +  G   +++ +++  I   S  L  L+N +LD+A +++G M  ++
Sbjct: 689 PLTSIRSFSEILFDNP-GIDEAQRLEFLAIIIKESERLTRLINQVLDMAKMESGRMTWHF 747

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF- 701
             +    L+ +   +      +  + ++      L     D  + +Q+   +LSNA+ F 
Sbjct: 748 VMVEPRQLIQDSIAATGALFEDRRVTLETRLADDLPPLRTDADKFMQVVINLLSNAVKFV 807

Query: 702 -SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
            + +G   +  AA  NG  +  V +NG  +P +  ++VF++F  V +    + +G GLGL
Sbjct: 808 EAGQGRVRLTLAATANGIRV-EVADNGPGLPANALEAVFDKFHQVGDTLTNKPKGTGLGL 866

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I  + +   GG + + S +    T    +P++ 
Sbjct: 867 AISRTIVEHLGGRIWVDSIEGQGATFTFDLPNQP 900


>gi|125623898|ref|YP_001032381.1| sensor protein kinase kinB [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|12483702|gb|AAG53727.1|AF176556_3 KinB [Lactococcus lactis subsp. cremoris MG1363]
 gi|2182990|gb|AAC45384.1| histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492706|emb|CAL97660.1| Sensor protein kinase kinB [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070670|gb|ADJ60070.1| sensor protein kinase kinB [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 517

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 135/262 (51%), Gaps = 26/262 (9%)

Query: 530 IIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           I PLP+  ++ M+T  +V+              + R+  +  N+F+ +VS+EL++PLT+I
Sbjct: 277 ITPLPDLDSRFMVTMNDVS--------------SYRRTVDAHNAFIANVSHELKTPLTSI 322

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF +LL+T  +    S+   +   I   S+ L++LV D L L   +  I K   S   L
Sbjct: 323 KGFAELLETDTVSP--SETKNFASIIHKESSRLMSLVQDTLLLTKQNQRIEKKKLS---L 377

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           + L+  + QS + ++ E ++R++  +  +  +F  + Q +  IF  ++ NA+ ++     
Sbjct: 378 SALIQNILQSSSPQISEKSLRLE--TQIEEITFKTNEQMVHSIFENLIENAIKYTPAQGQ 435

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766
           + +    +    IFSV +NG  + E   + +F+RF  ++  R +  G GLGL+IVE  + 
Sbjct: 436 IFVSLHHEQDKIIFSVTDNGPGLSEIQKERIFDRFYRADESRAEVSGTGLGLAIVEKNVQ 495

Query: 767 -LHGGHVSISSSDEGVT-TINC 786
            LHG    +S   +G T T+N 
Sbjct: 496 ELHGTIDVVSILGKGTTFTVNL 517


>gi|300722372|ref|YP_003711658.1| sensory histidine kinase in two-component regulatory system wtih
           KdpE [Xenorhabdus nematophila ATCC 19061]
 gi|297628875|emb|CBJ89458.1| sensory histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation [Xenorhabdus
           nematophila ATCC 19061]
          Length = 904

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 133/265 (50%), Gaps = 12/265 (4%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  V  +      LT   E+ +   + ++++NS +  +S++LR+PLT + 
Sbjct: 630 VPEQQRLLQTFTGVIANALERLHLTRSAESAKLETEREQLRNSLLAALSHDLRTPLTILF 689

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T++L    L + NS  +Q V  I         LVN++LD+A + +G ++LN     L 
Sbjct: 690 GQTEILMLD-LSAENSPHTQQVNQIRQQILSTSRLVNNLLDMARIQSGGIQLNLEWYPLE 748

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    +S+   +H  N+ + + +   L     D   L ++F  +L NA+ ++ + + +
Sbjct: 749 EIVGSALRSLDYSLHRYNVELTLSTHLFLH---CDAALLERVFINLLENAIKYTHEQTPL 805

Query: 709 ILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            ++A      +       + + GS IP    + +F +F   +      GVGLGL+I ++ 
Sbjct: 806 GIQATIEQETEKKQVHIEIWDAGSGIPSGQEQLIFEKFSRASKESVIPGVGLGLAICQAI 865

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I +HGG++  + + +G  + +  +P
Sbjct: 866 IEIHGGNIWATGNQKGGASFHFVLP 890


>gi|297195413|ref|ZP_06912811.1| two-component sensor [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152774|gb|EDY63125.2| two-component sensor [Streptomyces pristinaespiralis ATCC 25486]
          Length = 391

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 11/228 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA R+++      +  V++ELRSPLT++ GFT  L        + ++   +E + A + 
Sbjct: 152 TEARRRSERSNAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAN 211

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQSIATKMHENNIRIKVISDGKL 677
            +  L+ ++LD++ +D+G +++    + L   +   V+  +A     +  R+ V   G L
Sbjct: 212 RVTRLIAELLDISRIDSGRLEVRRQPVDLAAAVRRHVEAHVAAGQTPDRFRVDVT--GPL 269

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPE 732
               AD  ++ Q+   +L NA+       T+ +  +   G         +V + G  IPE
Sbjct: 270 PDLWADPDKVDQVLGNLLENAVRHGEGTVTIDIAPSPSAGGQSGTGTAVTVSDEGPGIPE 329

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +    VF RF   + RG   G GLGL IV+  +  HGG +++     G
Sbjct: 330 ESMGRVFTRFWRGSKRG---GTGLGLYIVKGIVEAHGGTITVGRGPGG 374


>gi|226304542|ref|YP_002764500.1| two-component histidine kinase [Rhodococcus erythropolis PR4]
 gi|226183657|dbj|BAH31761.1| putative two-component histidine kinase [Rhodococcus erythropolis
           PR4]
          Length = 368

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 9/228 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R E A  +    L  +D ++   +  +++ELR+P++ +  + D ++   + +  S  
Sbjct: 125 DFTRLETAFADMAARLDHSDRVRKRLLADLAHELRTPVSTLAAYVDGIEDGVVPTDPSSW 184

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S   + +      L  L  D+ D++  D   ++L+  T  L+D++     +   +  +  
Sbjct: 185 SVMRDQLER----LRRLSCDLADVSAADEHALELDRRTENLDDVVCSATAAAGPRFADRG 240

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +      +  +   DRQR+ QI + +L NA+  +  G +V +   R+      SV + 
Sbjct: 241 VELTTALPPQPITAEVDRQRIEQILANLLENALRHTPTGGSVKVTLVREGDHLTVSVTDT 300

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVS 773
           G  IP D  +SVF+RF    HRG R  G GLGL+I  S    HGG+++
Sbjct: 301 GDGIPADQLESVFDRF----HRGDRSDGSGLGLTIARSLALAHGGNLT 344


>gi|332971319|gb|EGK10282.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora
           sp. 8437]
          Length = 359

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 7/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL    E L   + ++      V++ELR+PL  +    +  +      +     + +  
Sbjct: 122 QALNHLTEELEHQEHLRRQMTSDVAHELRTPLATLKSHMEAFEDG----IWQPTPERLRA 177

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++     L  LV D+  L  +++   +L      L+ ++++   ++     +  I +K  
Sbjct: 178 VTDEIDRLTGLVGDMEQLTLLESPEFELEQKEEDLSAIVDQTLTNMRASFDQKGIALKSE 237

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S G + ++V DR+R+ Q+   +LSN + F+SKG  V ++  +   + I +V++ G  IP+
Sbjct: 238 SVGPVHAWV-DRRRIAQVLVNLLSNCLKFTSKGGEVTVRTEQKGQEAILTVRDTGEGIPQ 296

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + VF RF  V  +   Q  G G+GL+IV+  +  H G + I S     T+I   IPS
Sbjct: 297 EELQRVFERFYRVDRSRNRQSGGSGIGLTIVKKLVESHAGAIRIESKPGTGTSIYIHIPS 356


>gi|322417759|ref|YP_004196982.1| histidine kinase [Geobacter sp. M18]
 gi|320124146|gb|ADW11706.1| histidine kinase [Geobacter sp. M18]
          Length = 584

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 18/218 (8%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+P+  ++G  +LL  ++L   + KQ  Y E +  S   LL +++DIL+
Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHTEL---DGKQRSYAEMLHRSGESLLGIISDILN 254

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-----FVADR 684
           ++ ++AG  KL    I  +  L+E  +S      E   R  V  + ++        V D 
Sbjct: 255 ISKIEAG--KLEIERIGFD--LHEATRSAVELYREVGRRKGVAIELQIAPDVPRHAVGDP 310

Query: 685 QRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
            RL Q+   I++N + F+ KGS    V L     NG ++ F +K+ G  IP +   ++F 
Sbjct: 311 NRLRQVLINIINNGLKFTEKGSVRIRVTLVEKSGNGHYVGFEIKDTGIGIPGEAIGAIFE 370

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F        R+  G GLGL+I +  + L GG + + S
Sbjct: 371 LFAQVDGSTTRKYGGTGLGLAIAKQLVELMGGEIEVES 408


>gi|254761651|ref|ZP_05213671.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           Australia 94]
          Length = 613

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVIQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|228990906|ref|ZP_04150870.1| hypothetical protein bpmyx0001_16670 [Bacillus pseudomycoides DSM
           12442]
 gi|228768843|gb|EEM17442.1| hypothetical protein bpmyx0001_16670 [Bacillus pseudomycoides DSM
           12442]
          Length = 323

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 124/235 (52%), Gaps = 10/235 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L E  E  +++ E+KN  + ++S++LR+P+T++IG+ DL++ SKL S   +  QYV  
Sbjct: 82  KSLKESIEKEKQSQEMKNEMIHNISHDLRTPVTSLIGYVDLVE-SKLHSNIEECDQYVAV 140

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   S  L N ++D+L+   ++    +L+   + +  L+ ++      ++ E  +    I
Sbjct: 141 LKRKSDELKNQIDDLLEYCHINYKERQLHKEIVEVKPLIEQIMIDFVPQLDEEKMHFD-I 199

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D + ++++   ++SN++ +   G  ++++   +N +    +KN G  I +
Sbjct: 200 ECKQTVQIEVDIKLIIRLMQNVISNSILYGKSGKKIVIEVLVENVNAQIKIKNYGPRISD 259

Query: 733 DMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +    VF +F       NAH G   G G+GL+I +S  ++H G +++ S+ E  T
Sbjct: 260 EDIPYVFEKFYRGEKSRNAHTG---GKGMGLAIAKSIAHIHEGDLTVDSNKEETT 311


>gi|227499589|ref|ZP_03929696.1| two-component sensor histidine kinase [Anaerococcus tetradius ATCC
           35098]
 gi|227218348|gb|EEI83602.1| two-component sensor histidine kinase [Anaerococcus tetradius ATCC
           35098]
          Length = 491

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 2/230 (0%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E + K +++KN F+  VS+ELR+PLT+I G+   L+  ++       SQ ++ I      
Sbjct: 256 ENIIKREDMKNEFISSVSHELRTPLTSIKGWAITLQAPEIQKNEDMMSQGLKIIEDEGDR 315

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  +V D+LD + + +   K +   + +  L  +V + +  +     I    ++  K   
Sbjct: 316 LSMMVEDLLDFSRLSSSSFKYDKEKLDIVALSLQVYRQLYPRTENQKIEFNFVTVYKSIP 375

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD+ R+ ++   I+ NA+ F+ +G  + L   ++N   + ++K+NG  I ED    V 
Sbjct: 376 VFADKNRIKEVLINIIDNAIKFTDEGGQIDLIIDQENDKVLITIKDNGEGIKEDEIAFVA 435

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++F   +    +   GLGLSI E     HGG + I S     T++   IP
Sbjct: 436 SKFYKGS--SSKSQTGLGLSICEEIAKAHGGKLVIKSQYGSGTSVTVEIP 483


>gi|227894304|ref|ZP_04012109.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
 gi|227863881|gb|EEJ71302.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
          Length = 621

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 122/241 (50%), Gaps = 20/241 (8%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKLGSLNSKQSQYVEYISASS 617
           +K ++ +  FV +VS+ELR+PLT++  + + L     K  K+        +++E     +
Sbjct: 374 QKNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPKIAP------KFLEVTQQET 427

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNI-RIKVISD 674
           + ++ ++ND+L L+ +D G+ K++   + LND +N +  +  +  K  +N   + K   +
Sbjct: 428 SRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKSHKKKYTIN 487

Query: 675 GKLGSFV----ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            +LGS       D  +++Q+   I++NA+ +S  G  + ++  ++    I S+ + G  I
Sbjct: 488 RELGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGI 547

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      +F+RF  V  A    + G GLGL+I +  +  H G +   SS+   +T    +
Sbjct: 548 PRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGRGSTFYISL 607

Query: 789 P 789
           P
Sbjct: 608 P 608


>gi|222529475|ref|YP_002573357.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456322|gb|ACM60584.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
          Length = 575

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 126/235 (53%), Gaps = 14/235 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K + I++ FV +VS+EL++PLT+I GF + LK    G+++ K    +++  I      
Sbjct: 339 LKKLERIRSDFVANVSHELKTPLTSIKGFVETLKD---GAIDDKDVAIKFLNIIEVEVER 395

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKL 677
           L+ L+ND+L L+ ++   M +    +V+ +++ E+ + +  K  + NI+  IKV    ++
Sbjct: 396 LVRLINDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKVQEGLEM 455

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             +   R  L QIF  ++ NA+ ++ +   V +   + +   +  VK+ G  IPE   + 
Sbjct: 456 NIY---RDWLKQIFINLIDNAIVYNKENGKVWVTVEKLDNLIVIKVKDTGIGIPEKEIER 512

Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF     +G+ R   G GLGLSIV+  + L+GG V + S +   +     IP
Sbjct: 513 IFERF-YRVDKGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566


>gi|309790734|ref|ZP_07685283.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227225|gb|EFO80904.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 871

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 13/260 (5%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+ ++TF    +S +  +AL    EA   AD+ K++F+  +S+E+R+PL  +IG   +  
Sbjct: 332 AEMLITFA---ESWQTAQALIAAKEAAEAADKAKSAFLAMMSHEIRTPLNAVIG---MSS 385

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L+  Q +Y   I  S   LL L+ DILDL+ ++AG M L      L+  L+E  
Sbjct: 386 LLLNSDLSELQHEYATTIGTSGKTLLALITDILDLSRIEAGQMVLEQQPFSLDTCLSETL 445

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +A     + + +K      L + V  D  RL QI   +LSNA+ F+ +G  V+   ++
Sbjct: 446 SIVAHAATTHGLMLKSQVRPGLPALVYGDVNRLRQIVVNLLSNAIKFTRRGEVVLSAESQ 505

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
              +        V++ G  I  +  + +F+ FV       RR  G GLGL+I      L 
Sbjct: 506 PQANGYHHITIQVRDTGIGISAEQIERIFHPFVQADSSTTRRYGGTGLGLAISRQLAELM 565

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG ++++S  E  +T   R+
Sbjct: 566 GGTLTVTSVPERGSTFTLRL 585


>gi|302188257|ref|ZP_07264930.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae 642]
          Length = 745

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQ-SQY 609
           R +  + +A+R  DE+    V  VS++LR+P+T I     +++   S  G   S++ S  
Sbjct: 509 RQVRREQQAVRARDEL----VAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRRISTA 564

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +++ +  L+ D+LD + ++AG   +    + ++ +  E    +A    + +I I
Sbjct: 565 IDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEI 624

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              ++  L    AD +RL Q+ S ++ NA+ F+ K  T+ + A  +  + +F+V+++G  
Sbjct: 625 SFNAEPDL-KVQADPERLFQVLSNLIGNAIKFTPKMGTIGVAAMSNGTEIVFTVRDSGEG 683

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP +    +F R+ +    G   G GLGL I +  I  HGG ++  S
Sbjct: 684 IPPEQLPHIFERYWT-VKEGNPTGTGLGLYISQGIIKAHGGELAAQS 729


>gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
 gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
          Length = 1384

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 122/264 (46%), Gaps = 38/264 (14%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  + TD  +A      ++EAL  A   K+ F+  +S+E+R+P+  +IG T LL  +   
Sbjct: 647 TATDATDLAKA------RDEAL-AATRAKSEFLATMSHEIRTPINAVIGMTGLLLDT--- 696

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL S Q+++VE I +S   LL L+NDILD + +++    L      L   L E    +  
Sbjct: 697 SLKSDQTEFVETIRSSGDALLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVA 756

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----- 714
           K+ E  + +    D +  + V  D  R+ QI   +LSNA+ F+S G  ++  + R     
Sbjct: 757 KVSEQGLELVYFIDPETPTIVIGDVTRVRQILVNLLSNAVKFTSDGEVLVSVSGRKLEIE 816

Query: 715 --------------DNGD------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752
                         D  D        FSVK+ G  IP +    +F RF  V ++   +  
Sbjct: 817 ENVQNLAVENISESDTCDIWPAYEIQFSVKDTGIGIPANRMNRLFKRFSQVDSSTNREYG 876

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL I +    + GG + + S
Sbjct: 877 GTGLGLVISKRLAEMMGGQMWVES 900


>gi|291279601|ref|YP_003496436.1| hypothetical protein DEFDS_1212 [Deferribacter desulfuricans SSM1]
 gi|290754303|dbj|BAI80680.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1099

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 13/238 (5%)

Query: 551 AERALTEKNE----ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +R L EK      A  +A+++K++ +  +S+E+R+PL  +  F D+++  K   L ++ 
Sbjct: 445 TDRKLLEKERLKRIAAEEANKVKSNLLATISHEIRTPLNAVTTFLDIMEERK--YLKTED 502

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +E    SS IL+NL+ND+LDL+ +++G  KL  + I L DL+ ++       + E  
Sbjct: 503 KYLLEKTKYSSNILINLINDVLDLSKIESGNFKLVKNEISLIDLIIKITSIFENSLLEKK 562

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-F 721
           +++ + I          D  RL QI   ++ NA+ F+  G  ++   L+   D   F+  
Sbjct: 563 LKMYIDIPPDVPDKIKTDDLRLSQILINLIGNAIKFTDNGYILLSVNLEKRNDKDIFLKI 622

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +VK+ G  I E   KS+F  F+       ++  G GLGL+IV+  +   GG + I S 
Sbjct: 623 TVKDTGIGIEEKNIKSIFLPFIQENVGDNKKYGGTGLGLAIVKLIVEKMGGTIKIESK 680


>gi|290960529|ref|YP_003491711.1| sensor kinase [Streptomyces scabiei 87.22]
 gi|260650055|emb|CBG73171.1| putative sensor kinase [Streptomyces scabiei 87.22]
          Length = 1391

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 14/254 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R+   L EK   L  + + K+ F+ ++S+ELR+PL +++    LL  +  G L  ++ Q+
Sbjct: 923  RSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLTDQEVQF 982

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +      +  +  
Sbjct: 983  ATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPLTLDRGLAF 1042

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDF 719
            +V + +       +D QRL QI   +LSNA+ F++ G   +          +  R++ D 
Sbjct: 1043 EVAVGENVPREMYSDEQRLQQILRNLLSNAIKFTASGRVELAVNRVKDPDHRFTREHHDE 1102

Query: 720  I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            +  F+V + G  I  +    +F  F        R+  G GLGLSI      L GG +   
Sbjct: 1103 VIAFAVSDTGIGIAAEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGGRIIAE 1162

Query: 776  SSDEGVTTINCRIP 789
            S     +T    +P
Sbjct: 1163 SVPGKGSTFTLYVP 1176


>gi|145631979|ref|ZP_01787731.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae R3021]
 gi|144982363|gb|EDJ89943.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae R3021]
          Length = 598

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1382

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 121/240 (50%), Gaps = 10/240 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  +AE        A  +A+  K+ F+ ++S+E+R+P+  IIG T L + +   +  
Sbjct: 527 DITERKQAEEETRLARIAAEEANRTKSDFLANMSHEIRTPMNAIIGMTHLAQRT---NPT 583

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ  Y+  I  ++  LL ++NDILD + ++AG + L      L+D+L  +   +  K  
Sbjct: 584 PKQKGYLTKIGNAAEALLGIINDILDFSKIEAGKLDLESIPFSLDDVLGNLVDMVGIKAG 643

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD---NGD 718
           +  + + + ++     + + D  RL QI   + +NA+ F+ KG  +I +  A D    G 
Sbjct: 644 QKGVEVVLAVAPDVPRTLIGDPLRLGQILINLANNAVKFTDKGEIIIRVVNAPDIPTAGR 703

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + SV++ G  +  +   ++F+ F        R+  G GLGL+I +    + GG V + S
Sbjct: 704 LMVSVRDTGIGMTSEQVSNLFHSFNQADTSITRKYGGTGLGLAISKQLCEMMGGTVCVES 763


>gi|325104532|ref|YP_004274186.1| histidine kinase [Pedobacter saltans DSM 12145]
 gi|324973380|gb|ADY52364.1| histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1368

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 5/244 (2%)

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            T+ +  ER   EK +++ K   +K  F  ++S+E R+PLT +I   + L  +KL    +K
Sbjct: 835  TNKLNLERMEREKMDSINK---MKTDFFTNISHEFRTPLTLMIAPLEELMANKLSERTTK 891

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            +  Y E I  ++  LLNLV+ +L+    +AG  KL  +   +   +++V  S      +N
Sbjct: 892  K--YHELILLNTKRLLNLVDQLLEFRKTEAGTRKLKLAKGDIVSFIHDVYSSFVVLSEKN 949

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
             I+    S         D+  + +I   +LSNA  ++ KG  + +  +++  +   +V +
Sbjct: 950  GIKYSFKSTESRLPISFDKDAIEKICFNLLSNAFKYTPKGGVIEINLSKNAQEIQITVSD 1009

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             G  I  +  +SVFNRF    ++    G G+GL+  +  + LHGG++ ++S         
Sbjct: 1010 TGIGIDINEQQSVFNRFYQVDNQEMNLGSGVGLAFTKKLVELHGGYIELNSKKGEGAVFA 1069

Query: 786  CRIP 789
              IP
Sbjct: 1070 VNIP 1073


>gi|302390527|ref|YP_003826348.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201155|gb|ADL08725.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 463

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 8/233 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E +RK++E++ +    +++ELR+P+  I G  + ++   L    +      E +S     
Sbjct: 235 EKIRKSEELRRNLTADIAHELRTPIAIIQGTLESIQEGVLEPTPALMLSLQEEVSR---- 290

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L+ D+ DL+ V+AG ++LN   I   +L  +       +     IR  +     L +
Sbjct: 291 MTRLIKDLSDLSLVEAGKLELNRIKIFPAELAGKFIH-FKAEAEAKGIRFDINFPRNLPA 349

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  RL+QI + +LSNA+  +S G  + L A +  G  +F V++ GS I ++    +F
Sbjct: 350 VYADPTRLVQIITNLLSNALKHTSSGR-IELSAEKAEGGVVFKVQDTGSGIKKEDLPYIF 408

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF        R+  G GLGL+I +  +  HGG + + S +   +  +  IPS
Sbjct: 409 ERFYRAEKSRSRKTGGTGLGLAITKGLVEAHGGRIWVESREGEGSVFSFFIPS 461


>gi|283851324|ref|ZP_06368606.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573274|gb|EFC21252.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 858

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 24/295 (8%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS-VRAERALTEKNEALRKADEIKNSFVQ 574
           G L LL+D+   YS       Q M    ++  + +R E  L         A E K  F+ 
Sbjct: 419 GGLLLLADAKAPYSDRDARTLQRMAVLFDMGAARLRVETELVAARRQAEAASEAKTQFLA 478

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+ELR+P+  I+G   L   + L     + ++Y + +  ++  L+ +V+++L+LA+V+
Sbjct: 479 NVSHELRTPINGILGMAQL---AILEGAVGRDAEYWQTVRDATDRLVAIVDNLLELASVE 535

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSK 693
           +G +        L  LL  ++ + + +     + + + I+ G     + D  RL QI   
Sbjct: 536 SGSLSPLLREFSLRRLLESLRGAFSVRAGLAGLTLGLDITPGLPDRLLGDPFRLRQILGN 595

Query: 694 ILSNAMDFSSKGSTVILKAARDN------------GDF-----IFSVKNNGSSIPEDMCK 736
           +L NA+ F+  G   +     D             GDF     +F+V + G  IP+D   
Sbjct: 596 LLDNAIRFTPSGGVSMQIRPFDPRTAGGPQRVFVAGDFNGISLVFTVTDTGIGIPKDKQA 655

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++F  F        +R  G G+GLSI      L GG + + S     +T +  +P
Sbjct: 656 AIFESFTLGEDHLTKRFGGTGMGLSIARRLAELLGGSIWVESRPGFGSTFHLTVP 710


>gi|229199021|ref|ZP_04325707.1| hypothetical protein bcere0001_45360 [Bacillus cereus m1293]
 gi|228584487|gb|EEK42619.1| hypothetical protein bcere0001_45360 [Bacillus cereus m1293]
          Length = 365

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 128/245 (52%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 121 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 180

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + ++++  
Sbjct: 181 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLEA 238

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DN + +  V N G S
Sbjct: 239 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNEEVVVQVMNYGDS 297

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F + +  R + R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 298 IPEEDLPYLFDMFYTGDKSRSENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTMFEVR 356

Query: 788 IPSKE 792
           +P  E
Sbjct: 357 LPKDE 361


>gi|167636243|ref|ZP_02394546.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
 gi|167528358|gb|EDR91129.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
          Length = 611

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+
Sbjct: 384 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVIQEETERMIRLVNALLQLS 442

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 443 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 500

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 501 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 559

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 560 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 601


>gi|146284366|ref|YP_001174519.1| sensory box histidine kinase [Pseudomonas stutzeri A1501]
 gi|145572571|gb|ABP81677.1| sensory box histidine kinase [Pseudomonas stutzeri A1501]
          Length = 595

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 145/332 (43%), Gaps = 36/332 (10%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-AFRSL-WKTEE--NRLSPG 477
           Q ++E   N   ++Q   +D + +G+ +   DGR++ +NP A R L W+ E   + L   
Sbjct: 247 QTNVEALVNGQQRLQA-LLDSIDDGLLIVDRDGRLEHANPVAQRQLAWENEHLGSTLGEA 305

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-- 535
                +     +  ++    D    ++   D ER+            +L + I P+ +  
Sbjct: 306 LGYPQLDNAARQVLDDKPLSDPPEDLVIEADGERR------------LLAWRISPVSHHD 353

Query: 536 ---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              +  ++   +VTD    ER              ++N FV   S+ELR+P+T +     
Sbjct: 354 GSISGAVMVLHDVTDQRTFER--------------VRNEFVLRASHELRTPVTGMQMAFS 399

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+       +S++S   + +      L+ L+ND+L+ +   +G  KL      + +LL 
Sbjct: 400 LLRERLRYPADSRESDLFDTVHEEMQRLVRLINDLLNFSRYQSGQQKLELEQCDVPELLE 459

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             +Q       E ++++K+     L + + DRQ++ ++   +LSNA+  + +G  V L A
Sbjct: 460 AARQRFEVNAAEQDVQLKLELQQPLPTLMLDRQQIERVLDNLLSNALRHTPRGGEVRLLA 519

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
                  I SV++NG  IP      +F  FV 
Sbjct: 520 RHHGERLILSVEDNGEGIPYSQQARIFEPFVQ 551


>gi|77359078|ref|YP_338653.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873989|emb|CAI85210.1| putative sensor protein; similar to LuxQ in Vibrio harveyi, similar
           to ArcB sensor in E. coli [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 896

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 9/244 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608
           R  R L ++ +   +A +IK+ F+ ++S+E+R+P+  I G   L     L   + +Q++ 
Sbjct: 508 RQTRTLRQEKQKADEASQIKSQFLANMSHEVRTPINGIKGLHYL----ALQQNDWQQART 563

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+E    +  +LL ++ND+LD + ++AG + L    + +  L  EV   I  ++   ++ 
Sbjct: 564 YIEQADGALGVLLRVLNDLLDFSKMEAGKLDLMQEPVDIGRLAEEVINLIQFEVSVKSLE 623

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           IK+  D      +  D  RL Q+   +L+NA+ F+++GS + LK  +       SV + G
Sbjct: 624 IKLDYDKNTNLMINTDAIRLKQVLLNLLNNAVKFTAQGS-ITLKIWQSKTMTYLSVSDTG 682

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ++  K +F  F    N+   Q  G GLGLSI +  + L GG + + S+    +T  
Sbjct: 683 IGISKEAQKKLFRPFAQADNSTSRQYGGTGLGLSICKKLVELMGGAIDLKSTAGQGSTFT 742

Query: 786 CRIP 789
             +P
Sbjct: 743 FSLP 746


>gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1609

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 6/221 (2%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            NE LR+ D +K+ F+ + S+ELR+PL  IIG ++ L           Q + +  I +SS 
Sbjct: 915  NEQLRRVDALKDQFLANTSHELRTPLQGIIGLSESLIER---VQERDQQEDLSMIISSSR 971

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +LVNDILD + +    ++L    + L  L + V +++A  +      I       L 
Sbjct: 972  RLNSLVNDILDFSKLKNQEIELATKPVNLYALTDVVLRNLAPLVQGKKFSIINAVPNDLP 1031

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
            +  AD  RL QI   ++ NA+ F+  G  V+        D +  SVK+ G  IP D  + 
Sbjct: 1032 AAWADENRLQQILYNLVGNAIKFTETGQIVVNALREKTSDVLTISVKDTGIGIPADKQEV 1091

Query: 738  VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F  F        R   G GLGLS+ +  + LHGG + + S
Sbjct: 1092 IFKEFEQGDGSIARSFAGTGLGLSVSKRLVELHGGKMWLES 1132


>gi|301061334|ref|ZP_07202116.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444653|gb|EFK08636.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 633

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 168/369 (45%), Gaps = 35/369 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG--THIRNIAAT-CSRYYNE--- 493
           ID++   + +F PDG +++ N  +R+L   +  ++        R I  T C   +++   
Sbjct: 283 IDNIPVMICLFNPDGNVRILNSHYRNLIGLDGRKIGDTDLAETRQIDPTICREVWSQMKQ 342

Query: 494 -SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
              GW  F  I T++    K+LQ +          ++ + L +   +   +++++  R+E
Sbjct: 343 GQRGWKDFT-IQTTYG---KNLQTS----------WARVRLSDGSVIGIGIDISERKRSE 388

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
                  E L+++++    F    S++L+ PL  I  F +LL T    S++++   ++  
Sbjct: 389 EQKEHYLEQLKRSNKELQDFAFVASHDLQEPLRKIQSFGELLVTEVHDSISAEGRDFLVR 448

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++T +  L++ +L  + V        +S + L + + E   ++A    E    ++V 
Sbjct: 449 MQNAATRMRKLIDSLLAYSRVTTKTRA--FSQVNLVEAVEEALGNLAVLKEEKKASVEV- 505

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--------AARDNGD-FIFSV 723
             G+L +   D+ +++Q+F  ++ NA+ F  KG +  +K           D  D +   V
Sbjct: 506 --GELPTVEGDQVQMIQLFQNLIGNALKFHRKGVSPEIKIYALTIHGGRSDQADVYEIFV 563

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           K+NG    E     +F  F     + +  GVG+GL+I    +  HGGH++ +S+  G   
Sbjct: 564 KDNGIGFDESYLSRIFTPFQRLHGKSEYEGVGIGLAICRKIVERHGGHITATSNPGGGAV 623

Query: 784 INCRIPSKE 792
               +P K+
Sbjct: 624 FIVTLPKKQ 632


>gi|218708960|ref|YP_002416581.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
 gi|218321979|emb|CAV17985.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
          Length = 1462

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 27/246 (10%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL--------GS 601
           + ++AL    +    A   K+ F+  +S+E+R+P++ I+G  +L++  +L        G 
Sbjct: 703 KQQQALDNARQKAESATAAKSQFLATISHEVRTPISGILGLLELMQEHQLSEELLNLHGG 762

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN            S+  LL++VND+LD + ++AG + LN + I L  +L  + Q  +  
Sbjct: 763 LNQ-----------SARNLLHIVNDVLDYSKIEAGKLDLNPTEIELGKVLARIVQPQSIH 811

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN 716
             +  +      D  L  ++ AD  RL QI +  L+NA+ F+  G+      +++     
Sbjct: 812 AQQKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKFTEHGTISLHIDVIEQNEHQ 871

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                +V + G  IP+D  +S+F  F        RR  G GLGLSI    I    G++ +
Sbjct: 872 QKVSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTGLGLSIALKLIEQMDGNIEL 931

Query: 775 SSSDEG 780
            SS+EG
Sbjct: 932 -SSEEG 936


>gi|199597242|ref|ZP_03210673.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
 gi|199591758|gb|EDY99833.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
          Length = 555

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 32/354 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ID+L  GV +   +  + L N A   L   +            I      Y ++   + L
Sbjct: 222 IDNLPLGVMLIDTNKDVILHNHAMSQLLGHQ------------IPQPRHNYLDDVKTYAL 269

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              I  +F  E+   Q    L +   ++ S+IPL    + L  + +   V          
Sbjct: 270 ARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRLQVLVILYDV---------- 319

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASS 617
             LR+ ++++  FV +VS+EL++P+T I GF + L +   G+ N   +  ++++ I   S
Sbjct: 320 TYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLS---GAKNDPATLDKFLKIIFDES 376

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L+NDIL L+  ++   +   + + L  L+++  +++A  + +  IR++V     L
Sbjct: 377 KRLTQLINDILTLSRPESN--QTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDL 434

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              V D ++L QI   +L+NA+ ++     V + A    G    +V + G  IPE     
Sbjct: 435 -QVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETEQAR 493

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF  V  A      G GLGL+IV   +    G V++SS     +T    +P
Sbjct: 494 IFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLP 547


>gi|256958080|ref|ZP_05562251.1| VanSG [Enterococcus faecalis DS5]
 gi|257079967|ref|ZP_05574328.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257417029|ref|ZP_05594023.1| VanSG [Enterococcus faecalis AR01/DG]
 gi|294779528|ref|ZP_06744923.1| sensor histidine kinase/response regulator [Enterococcus faecalis
           PC1.1]
 gi|300860242|ref|ZP_07106329.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|307268333|ref|ZP_07549714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX4248]
 gi|307276157|ref|ZP_07557288.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX2134]
 gi|307286854|ref|ZP_07566936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0109]
 gi|312951111|ref|ZP_07770016.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0102]
 gi|256948576|gb|EEU65208.1| VanSG [Enterococcus faecalis DS5]
 gi|256987997|gb|EEU75299.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257158857|gb|EEU88817.1| VanSG [Enterococcus faecalis ARO1/DG]
 gi|294453407|gb|EFG21814.1| sensor histidine kinase/response regulator [Enterococcus faecalis
           PC1.1]
 gi|300849281|gb|EFK77031.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|306502069|gb|EFM71355.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0109]
 gi|306507151|gb|EFM76290.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX2134]
 gi|306515359|gb|EFM83893.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX4248]
 gi|310630887|gb|EFQ14170.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0102]
 gi|315036302|gb|EFT48234.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0027]
 gi|315154149|gb|EFT98165.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0031]
 gi|315158988|gb|EFU03005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0312]
 gi|315166288|gb|EFU10305.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX1302]
 gi|315171872|gb|EFU15889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX1342]
 gi|323481724|gb|ADX81163.1| sensor histidine kinase VanSG [Enterococcus faecalis 62]
 gi|327536015|gb|AEA94849.1| sensor histidine kinase VanS [Enterococcus faecalis OG1RF]
          Length = 370

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 133/255 (52%), Gaps = 8/255 (3%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+  +  ++ F    + +R E  L  + +  ++A++ KN  + +++++L++PLT++IG+ 
Sbjct: 112 PIALSANLMEFDKELNQIRQEVNL--RQQQAKEAEQRKNDLIVYLAHDLKTPLTSVIGYL 169

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL   +L      + +Y+      +  L  L+N+  ++A  +   ++L  +++ L+ +L
Sbjct: 170 TLLH-DELEISTQLREKYLAISLEKAEHLEELINEFFEIARFNLSNIELEPTSVRLDRML 228

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           N+V       + +  + I+      L S   D  ++ ++F  ++ NA+++S  G+T+ L 
Sbjct: 229 NQVSYEFLPMLKQKQLTIETDFTEAL-SIHLDVDKMQRVFDNLVQNAINYSYAGTTISLS 287

Query: 712 AARDNGDFIFSV--KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
              DN +   ++   N+G ++P +    +F +F  +  A +  R G GLGL++ +  + L
Sbjct: 288 TKVDNENQRVNIYFTNHGPTVPPEKLARIFEQFFRLDTARQTNRGGAGLGLAVAKKIVEL 347

Query: 768 HGGHVSISSSDEGVT 782
           HGG +S  S +E  T
Sbjct: 348 HGGVLSAESENEKTT 362


>gi|66767064|ref|YP_241826.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66572396|gb|AAY47806.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 603

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 175/404 (43%), Gaps = 48/404 (11%)

Query: 410 GGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G  IW+ +  +  ++  E +Y       G  +  + E + +     RI L NPAF  L+ 
Sbjct: 199 GTVIWLLQRQIRRRLAAEQEYLRASGRAGSVLQTVREPIVLLDARQRIVLHNPAFAELYG 258

Query: 469 TEE--NRL------------SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            EE  N L             P  H R +A    R   + + WD        F+ E++  
Sbjct: 259 LEERGNELMLLDDVGDGAWRDPQIHQR-LADVLLR---DRELWD--------FEHEQRGA 306

Query: 515 QGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTD-------SVRAE---RALTEKNEALR 563
            G L  +   ++    +PLP+  +  +  + V+D         R +   R L  K E + 
Sbjct: 307 DGVLRTM---LINARRMPLPDDGEEEVVLMTVSDISLQKVSQQRIQELNRQLEGKVEQVS 363

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + +    +F   VS++LR+PL ++ GF+D L      + + K   Y+E IS+S+  + +L
Sbjct: 364 EVNRELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASL 423

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           ++D+L  + +    ++L    + +  L+ E +  +   +   N   +V      L   +A
Sbjct: 424 IDDLLVYSRLGRSALRLQ--AVDMQSLVAETRAILDANVQSENTGHRVDWHIAPLPVLIA 481

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIPEDMCKSVF 739
           D   + Q++  ++ NA+ +S+K     ++   +   +G   F+V++NG+    D    +F
Sbjct: 482 DENMMRQLWMNLMGNAVKYSTKREVAKIEIGYEPMPDGGHYFTVRDNGAGFDMDYSGKLF 541

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
             F       +  G G+GL+ V   +  HGG V +    DEG T
Sbjct: 542 GVFQRLHKVSEYPGTGIGLASVRRVLARHGGRVWAEGVVDEGAT 585


>gi|145628532|ref|ZP_01784332.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 22.1-21]
 gi|145639720|ref|ZP_01795322.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae PittII]
 gi|144979002|gb|EDJ88688.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 22.1-21]
 gi|145271088|gb|EDK11003.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae PittII]
 gi|309750363|gb|ADO80347.1| Aerobic respiration sensor-response protein ArcB [Haemophilus
           influenzae R2866]
          Length = 598

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|331092297|ref|ZP_08341125.1| hypothetical protein HMPREF9477_01768 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401729|gb|EGG81308.1| hypothetical protein HMPREF9477_01768 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 468

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 124/244 (50%), Gaps = 6/244 (2%)

Query: 543 VNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +N  D V    A L   +  L+  +  +  F+ +VS++ RSPLT+I G+ + +    +  
Sbjct: 219 INTDDEVGYLSASLNYMSNQLKDMNSYQKKFIANVSHDFRSPLTSIKGYVNAIADGTIPV 278

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 +Y+  I   +  L +L  D+L L   D   + L+ S+  +++++     S   +
Sbjct: 279 --EMYDKYLNIILFETERLTDLTQDLLTLNEFDTKELLLDKSSFDIHEIIRTTAISFEGR 336

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                I I+++   K     AD++++ Q+   +L NA+ FS+  S++ ++     G    
Sbjct: 337 CTAKKISIELLFASKTIFVYADKRKIQQVLYNLLDNAVKFSNADSSIYVETTEHGGKVFV 396

Query: 722 SVKNNGSSIPEDMCKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+ G  IP+     ++ RF  ++  RG+ ++G GLGL+IV+  IN HG  +++ S+ E
Sbjct: 397 SVKDAGIGIPKKSINQIWERFYKTDLSRGKDKKGTGLGLAIVKEIINAHGESINVIST-E 455

Query: 780 GVTT 783
           GV T
Sbjct: 456 GVGT 459


>gi|329925318|ref|ZP_08280259.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328939926|gb|EGG36261.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 485

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 142/260 (54%), Gaps = 15/260 (5%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +  L F ++ D + ++ +  E++ + L++ +  +  F  +V++EL++PLT+I+G+ +++
Sbjct: 227 GELALNFNDMIDRIGSQISTIERDRDRLKELNAQEKRFFDNVTHELKTPLTSILGYAEII 286

Query: 595 KTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAG--IMKLNYSTIVLNDLL 651
           +    G  + K   + + +I   S  L  +V  +L+++  + G   ++L  S  +L D++
Sbjct: 287 REK--GDDDRKFFDKGMNHIVEESRRLHGMVLRLLEVSQHNPGEEDVELVDSGKILRDVV 344

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + +  S   K ++ +I    I + + GSFV     RL Q+F  +L NA+ +S+  S + +
Sbjct: 345 DSM--SFRAKRYKKSI----ICEAEEGSFVLGQPDRLRQLFINLLDNAIKYSAAQSEITV 398

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG-VGLGLSIVESFINLHG 769
           KA R +G   ++  N G  IP D   +VF  F S + + +  G VGLGLSIV+S ++ HG
Sbjct: 399 KAERADGSVRYTFDNTGEPIPADELANVFQPFYSVSQKQKEEGSVGLGLSIVKSIVDDHG 458

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + I S +   T +   IP
Sbjct: 459 GTIRIISENFH-TVVYVEIP 477


>gi|329123765|ref|ZP_08252324.1| aerobic respiration control sensor protein ArcB [Haemophilus
           aegyptius ATCC 11116]
 gi|327469668|gb|EGF15136.1| aerobic respiration control sensor protein ArcB [Haemophilus
           aegyptius ATCC 11116]
          Length = 598

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|309792218|ref|ZP_07686690.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308225759|gb|EFO79515.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 726

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 2/220 (0%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  VS+ELR+PL  + GF  ++   K G LN  Q +++      +  L   + ++L+  
Sbjct: 494 FISMVSHELRNPLNTLNGFLKVVLQGKAGPLNELQQEFLGLADGQADALKGRITELLEYN 553

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +++G ++L      L DLL         +  +  + I+      +   + D +R+ Q+ 
Sbjct: 554 RLESGRLRLQPQWSDLADLLLRTSTRFQIQAEQFGLTIETAIPTNIPEVLMDPERIGQVL 613

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + ++ NAM  +  G  + L+A       +  V + G  IPE+  + +F+RF    H    
Sbjct: 614 TNLIENAMKATPAGGKIALRALVQEQYVLVQVADTGVGIPEEQREKIFSRFYRLEHTSSL 673

Query: 752 RGV--GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GV  GLGLSI +  +  H G + + S+    +  N  +P
Sbjct: 674 HGVHLGLGLSICQQIVEGHNGRIWVESAVAQGSCFNFTLP 713


>gi|291447256|ref|ZP_06586646.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
           15998]
 gi|291350203|gb|EFE77107.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
           15998]
          Length = 542

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   +L +K   +   +E    FV  +S+ELR+PLT I    ++L+  +  +L+   +  
Sbjct: 288 RTASSLEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLE-DEADTLDPMIAPA 346

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  + + +  L +LV +++++   DAG  +L    +   D+ ++V   I  +   + + +
Sbjct: 347 VHLVVSETRRLNDLVENLMEVTRFDAGTARLVLDDV---DVADQVTACIDARAWLDAVHL 403

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               D + G     D +RL  I + ++ NA+     GS V ++   +  + +  V+++G 
Sbjct: 404 ----DAERGMMARLDPRRLDVILANLIGNALKHG--GSPVGVRVRTEGEELVIEVRDHGP 457

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPE++   VF+RF  ++A R +  G GLGLSI     ++HGG +S ++S +G      R
Sbjct: 458 GIPEEVLPHVFDRFYKASASRPRSEGSGLGLSIAVENAHIHGGDISAANSPDGGAVFTLR 517

Query: 788 IP 789
           +P
Sbjct: 518 LP 519


>gi|260580898|ref|ZP_05848722.1| aerobic respiration control sensor protein [Haemophilus influenzae
           RdAW]
 gi|260092387|gb|EEW76326.1| aerobic respiration control sensor protein [Haemophilus influenzae
           RdAW]
          Length = 598

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|238751334|ref|ZP_04612827.1| Aerobic respiration control sensor protein arcB [Yersinia rohdei
           ATCC 43380]
 gi|238710392|gb|EEQ02617.1| Aerobic respiration control sensor protein arcB [Yersinia rohdei
           ATCC 43380]
          Length = 799

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 135/260 (51%), Gaps = 34/260 (13%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +S+Q +Y
Sbjct: 285 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DSEQLKY 341

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      +    ++ 
Sbjct: 342 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLLVQPKGLKF 401

Query: 670 ----------KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
                     KVI+DG          RL QI   ++ NA+ F+  G  ++L+  R+  D 
Sbjct: 402 ILEPQLPLPEKVITDGT---------RLRQILWNLIGNAVKFTQHGK-IVLRVWREGSDR 451

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
            IF V+++G  IPED    +F  +  V +++ G+   G G+GL++ +      GG +++ 
Sbjct: 452 LIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVK 511

Query: 776 SSDEGVT---TINCRIPSKE 792
           S+ +GV    T+  + P+++
Sbjct: 512 ST-QGVGSCFTLTIKAPAEQ 530


>gi|269928609|ref|YP_003320930.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787966|gb|ACZ40108.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 668

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 15/249 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL------KTSKLGS 601
           SV   R   E  EA++  DE    F+   ++ELR+PLT+I G+  LL      +   + +
Sbjct: 405 SVDNARLYQEAREAIKARDE----FLSVAAHELRTPLTSIKGYIQLLDRRLAIEQPDIAA 460

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L +     +E +         +V D+LD++ +D G + L      L  +  EV  ++   
Sbjct: 461 LRAS----MEKLRPQLARFERIVRDLLDISRIDRGHLALQREPCDLAAIAREVFDAVEHS 516

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +  +  +   +S       + D  R+ Q+ + +LSNA+ FS+    V+++  R+    + 
Sbjct: 517 VDHDPAQPMRLSVPDTLPGIWDGARITQVLANLLSNALKFSTGRGEVVMEVRREGTHAVI 576

Query: 722 SVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  + E+    VF  F  +++  G   G GLGL I +  + LHGG +++ S+   
Sbjct: 577 CVRDQGVGMTEEEQSRVFEPFFRADSIVGHIPGTGLGLHITKRIVELHGGSITVESTPRI 636

Query: 781 VTTINCRIP 789
            +T   R+P
Sbjct: 637 GSTFTVRLP 645


>gi|224373295|ref|YP_002607667.1| sensor histidine kinase/response regulator [Nautilia profundicola
           AmH]
 gi|223588528|gb|ACM92264.1| sensor histidine kinase/response regulator [Nautilia profundicola
           AmH]
          Length = 1030

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 120/237 (50%), Gaps = 14/237 (5%)

Query: 551 AERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            + A+    E++RKA+E    K+ F+ ++S+E+R+PL  I+GF +LL T+    L  +Q 
Sbjct: 374 VDEAIKVTQESVRKAEEATKAKSLFLANMSHEIRTPLNGILGFLELLNTT---DLTEEQL 430

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            YV  I+ S+  LL +VN+ILD++ +++  + L        D      +   T   + NI
Sbjct: 431 DYVNTIAQSAKNLLQIVNNILDVSKIESNKVSLELIDFKAVDEFENTIELFGTPAAQKNI 490

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIF 721
            +       + S +  D  ++ +I + +LSNA+ F+     +     + K   +     F
Sbjct: 491 ELTTQISPNIPSIIKGDILKIKEILTNLLSNAIKFTPNNGHIHVKIQLEKIIDNKAKIYF 550

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            V+++G  + E+  + +F  F        R+  G GLGL+IV+S+I + GG + + S
Sbjct: 551 EVRDSGIGMSEEQKEKIFEAFSQADESVTRKYGGTGLGLTIVKSYIEMMGGKIYLES 607


>gi|196043500|ref|ZP_03110738.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225864540|ref|YP_002749918.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|196025809|gb|EDX64478.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225787658|gb|ACO27875.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 385

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 155 RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 214 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 273

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  +   A   N      + N G  IP      +F RF
Sbjct: 274 DGDKLVRVFENLIINAIAYGNDGDYIDFAAYESNNMITIDITNYGQPIPSTDLPHIFERF 333

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 334 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 375


>gi|167644627|ref|YP_001682290.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347057|gb|ABZ69792.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 570

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 545 VTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           V D++R  RA    L +     ++A+  K++F+  +S+ELR+P+  ++G    L +++L 
Sbjct: 172 VLDAMRLVRASALALEKAQIEAQEANRAKSAFLAMMSHELRTPMNGVLGMAHALGSTQL- 230

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +++Q+ YVE I  S   L+ ++NDILDL+ ++A  ++   +   +  L  ++++  + 
Sbjct: 231 --DARQADYVETIVQSGDGLMAILNDILDLSKIEARKLEFEITPFDIRALGRQLQRVWSE 288

Query: 661 KMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 + + +    +   ++A D  R+ QI   ++SNA+ F+ +G   +  A    G  
Sbjct: 289 TARRKGLSLTLDVAPETPQWLAGDPARVRQILLNLVSNALKFTEEGRVALRIAPHAAGGV 348

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS- 776
             +V + G+ +  +    +F  FV       RR  G GLGLSI      + GG V+  S 
Sbjct: 349 EITVSDTGAGMSPEQQAKLFTPFVQGDASIARRFGGTGLGLSICRELAEMMGGRVTADSR 408

Query: 777 SDEGVT 782
             EG T
Sbjct: 409 PGEGST 414


>gi|90022560|ref|YP_528387.1| Cache sensor hybrid histidine kinase [Saccharophagus degradans
           2-40]
 gi|89952160|gb|ABD82175.1| Cache sensor hybrid histidine kinase [Saccharophagus degradans
           2-40]
          Length = 779

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L +A++ K +F+  +S+E+R+P+  I+G+  +L TS     +S Q   ++ I  +   
Sbjct: 396 DELDQANKAKTTFLATMSHEIRTPMNAILGYAQIL-TSDADIPDSHQDT-LKAIEGAGKH 453

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+ND+LD+  +++G M L Y  + + D++  + +  + +  +  +      D     
Sbjct: 454 LLSLLNDVLDITKIESGGMILYYENVYVRDMIESLDKVFSVRCQQKKLDWSSEIDIP-EE 512

Query: 680 FVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           ++A  DR +L QI   +L N++ F+  G  V L+AA +N   I ++ + G  I  +  + 
Sbjct: 513 YIACVDRAKLNQIAFNLLGNSVKFTEHGR-VHLEAAIENDHLILTIIDTGPGITPENQQK 571

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F       ++ G GLGL+I++  + L GG V +  +    +     IP
Sbjct: 572 LFTPFYQGQAGFEQGGTGLGLAIIQKLVELMGGTVGLKDTSALGSIFEVDIP 623


>gi|304407579|ref|ZP_07389231.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304343530|gb|EFM09372.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 368

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 124/263 (47%), Gaps = 8/263 (3%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+     +     +T+ + +   ++E  E  R++++ KN  + +VS++LR+PLT+IIG+
Sbjct: 102 IPVRQGNELTELAEITNQIVSR--MSETLEDQRRSEQAKNELITNVSHDLRTPLTSIIGY 159

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L++  +      +   YV+     S  L  L+ D+ +   +    + L  +   L +L
Sbjct: 160 LGLIEQDRYRD-EIELRYYVQIAHDKSKRLGILIEDLFEYTRMRHDAIPLKRTEFDLIEL 218

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L ++       + E  +   + ++       AD  +L+++F  + +NA+ +  +G  + +
Sbjct: 219 LRQLLVQYRVALSEAGLEGAMQTEEPAVPMFADADKLVRVFENLFANAIAYGKEGKRLDI 278

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFIN 766
               ++G  I  V N+G  IP      +F+RF     S       RG GLGL+I +S + 
Sbjct: 279 IVRSEDGHAIVEVMNDGEPIPSVDLPHIFDRFYRVDKSRTEEAGTRGSGLGLAIAKSIVE 338

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            H G +++  SD   T    R+P
Sbjct: 339 RHNGTIAV-VSDTSRTAFVLRLP 360


>gi|289579383|ref|YP_003478010.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289529096|gb|ADD03448.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 470

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L + ++++  FV +VS+ELRSPLT+I G+ D +    +     K   Y++ +   +  + 
Sbjct: 241 LEQLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPV--EKACDYLKIVQKETRRMS 298

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D L++  +++G   L+ +   +N+L+         ++ E ++ +KV  +      +
Sbjct: 299 RLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVI 358

Query: 682 ADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVF 739
           AD+ ++ Q+ S ++ NA+ FS  KG   I    +D+  FI ++K+NG  I PED  + ++
Sbjct: 359 ADKDKIEQVLSNLIDNAIKFSKEKGIIHIFTETKDDKVFI-TIKDNGIGISPEDQ-EHIW 416

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +RF        + G GLGL IV+  IN H   + + S
Sbjct: 417 DRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVES 453


>gi|311069406|ref|YP_003974329.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869923|gb|ADP33398.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 578

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTIL 620
           +K ++++  FV +VS+EL++P+T+I GFT+ L     G+L+ +++  +++  I   S  L
Sbjct: 347 KKLEQMRKDFVANVSHELKTPITSIKGFTETLLD---GALDDREALLEFLSIILKESERL 403

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV D+LDL+ ++     L+  T     +L E++  +  K  E +IR ++         
Sbjct: 404 QSLVQDLLDLSKIEQQNFTLSVETFDAAKMLGEIETLLQHKASEKDIRFELNIPKDPLYV 463

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+F  + +NA+ ++ +  TV + A     D    V + G  I ++    +F 
Sbjct: 464 QGDVYRLKQVFLNLANNALTYTPEHGTVTISAKLAEEDIQIEVADTGIGIEKEEIPRIFE 523

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           RF  V         G GLGL+IV+  I  H G + +  S++G  TI
Sbjct: 524 RFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEV-KSEQGQGTI 568


>gi|326317103|ref|YP_004234775.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373939|gb|ADX46208.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 558

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 19/258 (7%)

Query: 547 DSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           D+V A  A L   +EAL++ DE +      +S+ELR+P T I G  ++   +  G +   
Sbjct: 284 DAVEARTAELRTAHEALQRNDERRRQLFADLSHELRTPATAIRGEAEI---ALRGGVRPA 340

Query: 606 QS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--K 661
           +   Q +E I  +   L   V+D++ +A  +A  + +    + L+ LL +  +       
Sbjct: 341 EEYRQTLERIVGAVEQLTGTVDDLMLVARTEADPLAMRPGPVALHGLLRDAAEQAEALCA 400

Query: 662 MHENNIRIKVIS---DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDN 716
           ++  ++R++  +    G+ G  + AD  RL Q    +L NA  +S  G TV L   A D 
Sbjct: 401 LYGVHLRLEAPAAWPGGQAGPTLHADADRLRQALMIVLDNAARYSHAGGTVHLGWRAEDE 460

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           G     V++ G  I  +    VF+RF+    + AHR    G G+GLSI  + +  HGG +
Sbjct: 461 GGIGIEVRDEGIGIDAEELPRVFDRFMRGSRARAHRAD--GTGIGLSIARAIVEAHGGSM 518

Query: 773 SISSSDEGVTTINCRIPS 790
           SI       T +   +P+
Sbjct: 519 SIGPVQPRGTLVGIHLPA 536


>gi|315497725|ref|YP_004086529.1| histidine kinase [Asticcacaulis excentricus CB 48]
 gi|315415737|gb|ADU12378.1| histidine kinase [Asticcacaulis excentricus CB 48]
          Length = 519

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 126/259 (48%), Gaps = 25/259 (9%)

Query: 547 DSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           D+++A+R  +    EALR+AD  K+ F+  +++ELR+P+  I    + L+  ++   +  
Sbjct: 137 DALQAQRDEIQRAAEALREADHRKDVFLATLAHELRNPMAPI---RNGLQILRMAPDSPM 193

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS----IATK 661
            +Q  + +    T L+ LV+D+LD++ V  G ++L    + L  ++    ++    I   
Sbjct: 194 AAQVRDMMDRQMTHLVRLVDDLLDVSRVSQGKIELKRDHLTLRSVVEAAVETARPVIDLA 253

Query: 662 MHENNIRIKVIS---DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            H   + +       DG L        RL QI + +L+NA  ++ +   + L   RD   
Sbjct: 254 GHTFTLDLPAEELWVDGDL-------TRLAQIVANLLNNAAKYTPERGRIGLSLRRDGAQ 306

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGG--HVS 773
            I  V + G  I  DM   VF  F     N HR Q  G+G+GL++ +  + LHGG  H  
Sbjct: 307 AIIRVSDTGLGIDADMLPRVFELFTQVDRNIHRAQ-GGLGIGLALAQKLVALHGGSIHAE 365

Query: 774 ISSSDEGVTTINCRIPSKE 792
            + +++G +T   R+P  E
Sbjct: 366 SAGANKG-STFELRLPLAE 383


>gi|229051134|ref|ZP_04194678.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
 gi|228722197|gb|EEL73598.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
          Length = 613

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEYRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|226310177|ref|YP_002770071.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093125|dbj|BAH41567.1| probable two-component sensor histidine kinase [Brevibacillus
           brevis NBRC 100599]
          Length = 363

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS-STILLNL 623
           A+  K+  V +++++LR+PLT+++G+ DL+   +   +  +Q ++   I+ + S  L  L
Sbjct: 138 AESSKDQLVLNLAHDLRTPLTSVLGYLDLILQDE--QMTQEQMRHYATIALTKSHRLEKL 195

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++++ ++  ++ G++ +    I L++LL ++ + +     +N +  +     +L   V D
Sbjct: 196 IDELFEITRMNYGMVTIEQKVIDLSELLVQLNEEMYPSFEKNELVARCTVAAQL-VIVGD 254

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            + L ++F  IL+NA+ +   G  + L A R+  + +  + N G  IPE+    +F  F 
Sbjct: 255 GELLARVFENILTNAIRYGGDGQFIDLNAYREGDEVVVQIMNYGDQIPEEALPHIFEMFF 314

Query: 744 SN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   A   Q  G GLGL I ++ +  H G +S+  SD   T    R+P
Sbjct: 315 TGDKARTHQGGGTGLGLFIAKNIVEKHRGTISV-QSDLIRTCFEVRLP 361


>gi|225181177|ref|ZP_03734623.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168146|gb|EEG76951.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 603

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 165/385 (42%), Gaps = 36/385 (9%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           MF  L+ Q+D   +  +  K + E I +H+++G+     DG++   NP    L    E  
Sbjct: 231 MFNYLSRQLDATLREISSEKGKVEAILNHMTDGIVALNRDGQVLHVNPTAHRLLDLNEES 290

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSVLEYSII- 531
                 +  + A            DL A + T   + R+  LQ   +L+  S + +    
Sbjct: 291 EPTAEVLGQLVAPV----------DLAAILNTGRQESREIMLQPHQQLIVASYVPFHTQD 340

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            + + + +   + V   V  ER L            I+  FV +VS+ELR+PLT +  +T
Sbjct: 341 EITDTEFLSGVLIVLHDVTKERELIR----------IQQEFVANVSHELRTPLTTMKSYT 390

Query: 592 DLLKTSKLGSLNSKQSQYVEYISA---SSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           + L    LG    +    + ++S     +  ++ LV D+L L+ +D   +      + LN
Sbjct: 391 ETL----LGGAMYEPETCLSFLSTMEKETERMVRLVKDLLALSQLDYRQVAWRKEKLPLN 446

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-- 706
           +L++EV   +  K  E    + V           DR ++ Q+   ++ N+  ++++    
Sbjct: 447 ELVSEVVNELRVKFQEEPRHVTVELPETTVWHCFDRDKMKQVLINVIQNSFKYTAEHGLI 506

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
            + L+ A D    +  V ++G  IP +  K VF+RF  V  A      G GLGLSI    
Sbjct: 507 RIALEVAEDQA--VIHVADDGIGIPPEDVKRVFDRFYRVDKARSRDFGGTGLGLSIAREI 564

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +  HGG +++ S  E  T     +P
Sbjct: 565 VEAHGGSITVCSEPEKGTQFTISLP 589


>gi|255936779|ref|XP_002559416.1| Pc13g09940 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584036|emb|CAP92063.1| Pc13g09940 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1879

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 123/250 (49%), Gaps = 15/250 (6%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++ D    ER L +  + L    E K  F  ++S+E+R+PL  I+G    +  ++L 
Sbjct: 1153 TCTDINDRKNLERELNKAMQQLNHQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQL- 1211

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +S Q + ++ I  SST L  LV++ILD++ V+AG M +  S   +  ++ +V  +IA+
Sbjct: 1212 --DSDQRRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSMVKSWFHIRSMIEDVIDTIAS 1269

Query: 661  KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD 715
            +  +  + I  +    L S V  DR R+ Q+   +L NA+ F+++G   I     +    
Sbjct: 1270 RAIDKGLEINYLIGEDLPSMVIGDRFRIRQVLINLLGNAVKFTAQGEIHICCDMYRDPSA 1329

Query: 716  NGD----FI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLH 768
            N D    F+ F V + G        + +  RF      G  Q  G GLGL + +  + +H
Sbjct: 1330 NPDDTQAFMNFEVVDTGKGFSSQDAERLMQRFSQLGENGTQQHAGSGLGLFLSKQLVEMH 1389

Query: 769  GGHVSISSSD 778
            GG ++ SS +
Sbjct: 1390 GGKLTPSSKE 1399


>gi|193084137|gb|ACF09803.1| ammonium transporter/integral membrane sensor signal transduction
           histidine kinase [uncultured marine group III
           euryarchaeote SAT1000-53-B3]
          Length = 752

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 2/229 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A++ K+ F+ ++S+ELR+PL  IIG++++L            S+ +  I +S   LL 
Sbjct: 517 QTANKAKSDFLANMSHELRTPLNAIIGYSEMLIEEADDDGLETYSEDLAKIHSSGDHLLT 576

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILDL+ ++AG M L+       +LL +++ +    + +N  +  +    K      
Sbjct: 577 LINDILDLSKIEAGKMDLHIEEFDFTNLLKQIEATARPLVDKNKNKFVIKCKTKKLKLKN 636

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ ++ QI   +LSNA  F+ KG+  +        +  F V + G  + E+    VF  F
Sbjct: 637 DQTKVRQILFNMLSNAAKFTKKGTITLQIKPEKKDNLRFDVIDTGIGMSEEQMDKVFEEF 696

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   +   G GLGL I +    + GG + + S +   TT +  IP
Sbjct: 697 TQAESSTSKDYGGTGLGLPISKKMTEMMGGKMEVKSKEGKGTTFSIIIP 745


>gi|92112997|ref|YP_572925.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM
            3043]
 gi|91796087|gb|ABE58226.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM
            3043]
          Length = 1316

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 121/561 (21%), Positives = 229/561 (40%), Gaps = 79/561 (14%)

Query: 290  GIAIDVSKEITVNDQLTHTYEI--------LHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
            G  I +S  I++ D+ +   E         + N+   I++ DQN  L   N+ ++EL+  
Sbjct: 620  GRGIGISDVISIVDEASQVLEFNRALLQATIENINQGISVVDQNARLVVWNQRYLELFRF 679

Query: 342  DLAFLATNPSNDELLEFLRSANKL----PEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
              + +  N   D++L +     +     PE+ + +   +NI    +  + H+   +  +G
Sbjct: 680  PDSLIRVNAPFDKILRYNAHNGEYGPGDPEE-HVELLMDNI----RQGQPHRYVRYRQDG 734

Query: 398  QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET---IDHLSEGVAVFGPDG 454
              L V     P GG ++ ++++T Q   E     L++ +       D++   +A F  + 
Sbjct: 735  TVLEVQGNPMPGGGFVYTYQDITQQKRTE---EALIRSENNIRIYTDNVPALIAYFDKEC 791

Query: 455  RIKLSNPAFRSLWKTEENRL-----------------SPGTH------------------ 479
            R   +N A+ S    + N                   +P  H                  
Sbjct: 792  RYLFTNRAYESAMGIDRNEAIGERFDNVMPSQVIRERAPWMHRALAGERVSFEISQDDGD 851

Query: 480  --IRNIAATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLELLSDSVLEYSIIPLP 534
              +R +  T + ++ E DG   F A+     + R +   L+ T E L + V E +   L 
Sbjct: 852  GGVRYMLVTYTPHFGEGDGVLGFFALYQDITERRLAEIALRETNENLEERVRERTQ-ALS 910

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             A   L   N   +  AE AL +  +   +A+  K  F+   S++L  PL         L
Sbjct: 911  EANAALRQENRVRA-EAESALRQAKQVAEEANASKTRFLAAASHDLLQPLN-----AARL 964

Query: 595  KTSKLGS-LNSKQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
             TS LG  +++   ++ + +I  S      L++ +LD++ +DAG +    +   L D+L 
Sbjct: 965  FTSALGQQVDADDLRHTISHIDNSLQAAEELLSTLLDISKLDAGALTPRRTQFPLTDILR 1024

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             ++        +  + + V++ G      +D Q L +I    LSNA+ ++ +G  V+L  
Sbjct: 1025 PLRAEFEVMAADRGLDLDVVATGAWVD--SDAQMLRRIVQNFLSNALRYTQQGR-VLLGC 1081

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLH 768
             R   +    V + G  IPE     +F  F     ++ H+   +G+GLGLSI +    + 
Sbjct: 1082 RRQGDNLSIEVWDTGPGIPEAKQAEIFQEFRRLDQASRHKESEKGLGLGLSIADRMSRVL 1141

Query: 769  GGHVSISSSDEGVTTINCRIP 789
               + I S  +  T  +  +P
Sbjct: 1142 EHPIKIRSWVDIGTVFSVSVP 1162


>gi|154246277|ref|YP_001417235.1| multi-sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
 gi|154160362|gb|ABS67578.1| multi-sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
          Length = 504

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 38/289 (13%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I  L  AQ  L  VN       E+ + E+   L++A++   SF   VS++LRSPL NI+
Sbjct: 219 TIAALETAQQDLEAVNAG----LEQRVAERTADLKEANDEIQSFAYIVSHDLRSPLVNIM 274

Query: 589 GFT---DLLKT---SKLGSLNSKQSQYVE--------------YISASSTILLNLVNDIL 628
           GFT   ++++T    +L  L  K  +  E              +I  S T +  L++ IL
Sbjct: 275 GFTSEIEVMRTDLFERLAQLREKAGEGPEADGELAADFEEALGFIKTSITRMDRLIHAIL 334

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            L+    G  +     + + +L+  +  S+A +M E    I+    G+L    +DR  L 
Sbjct: 335 ALSR--EGRKEFLPVDVDVGELVASIAGSMAHQMQEAGAEIRA---GRLPVIHSDRLALE 389

Query: 689 QIFSKILSNAMDFSSKGSTVILK-AARDNGDFI-FSVKNNGSSI-PEDMCKSVFNRFVSN 745
           QIF+ +L NA+ +  +G   +++ +A D   FI F+VK+NG  I P+D  + VF  F   
Sbjct: 390 QIFTNLLDNALKYRREGVPGLIEVSAVDTPGFITFTVKDNGRGIDPKDRGR-VFELF-RR 447

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT---TINCRIPS 790
           + R  R G G+GL+ V + +   GG +S+ S+  EG T   T+  R+P+
Sbjct: 448 SGRQDRPGEGIGLAHVRALVRRMGGLISLDSTLGEGSTFKVTLPRRLPT 496


>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1819

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 11/226 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            +++AL +A  +K+ F+  +S+E+R+PL  +IG +++L  +    LN +Q+ +   I  S 
Sbjct: 1142 RDQAL-EASRLKSEFLATMSHEIRTPLNAVIGMSEILLDT---PLNEEQADFARIIRDSG 1197

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGK 676
              LL+++NDILD + ++AG M L      L  L++ V +  A+ + + N+ +   I+   
Sbjct: 1198 KSLLSIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLHLFGWIAPDV 1257

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVK--NNGSSIPE 732
                V D  RL Q+   ++ N + F+ +G  S  I    R   + I  V+  + G  + E
Sbjct: 1258 PNIVVGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERLENEVILRVEVHDTGIGLSE 1317

Query: 733  DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               K +F  F        RR  G GLGL+I +S + L GG + + S
Sbjct: 1318 TARKRLFTPFTQADGSMTRRFGGTGLGLAISKSLVELMGGEIGVES 1363


>gi|307325426|ref|ZP_07604628.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           violaceusniger Tu 4113]
 gi|306888895|gb|EFN19879.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           violaceusniger Tu 4113]
          Length = 398

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 106/231 (45%), Gaps = 13/231 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA R+ +      +  V++ELRSPLT++ GFT  L        + ++   +E + A + 
Sbjct: 155 TEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAN 214

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  L+ ++LD++ +D+G +++    + L   +    Q++    H    R  + + G L 
Sbjct: 215 RVTRLIAELLDISRIDSGRLEVRRQPVDLAAAVRRHVQALTAAGHTAE-RFLIRARGPLP 273

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---------FSVKNNGSS 729
              AD  ++ Q+   +L NA+       T+ +  A      +          +V + G  
Sbjct: 274 RLWADPDKIDQVLGNLLENAVRHGEGTVTIDIAPATPAKPVVEGPPVERTAVTVSDEGPG 333

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           IPE+    VF RF   + RG   G GLGL IV+  +  HGG +++  +  G
Sbjct: 334 IPEESMSRVFTRFWRGSKRG---GTGLGLYIVKGIVEAHGGTITVERARGG 381


>gi|289622415|emb|CBI51037.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 1333

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 127/258 (49%), Gaps = 12/258 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++   V  +R L     A ++A  +K+ F+ ++S+E+R+P+T +IG  +LL       L+
Sbjct: 702 DIEAQVLEKRQLLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDV---GLD 758

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q +  E I  S+  LL ++NDILD + +++G + +      L  ++ EV + ++    
Sbjct: 759 AEQRELTENIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVSKMLSFTAE 818

Query: 664 ENNIRI--KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716
              +    ++ SD  L   V  D  RL Q+   +  N + F  +G    +  + +   D 
Sbjct: 819 RKGLTFNYEICSDIALDLVVMGDPGRLRQVLCNLAQNGIKFCHEGHVKLNVFVEQETNDT 878

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            +  F +++ G  I E++ K +F  F        R+  G GLGL+I ++ + L  G +++
Sbjct: 879 IEVKFVIQDTGIGIEEEVLKGLFQPFSQGDASTARKFGGTGLGLTISKNLLELMNGRMAL 938

Query: 775 SSSDEGVTTINCRIPSKE 792
           +S     TT    IP K+
Sbjct: 939 ASKRGEGTTATFWIPFKK 956


>gi|307729618|ref|YP_003906842.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307584153|gb|ADN57551.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 657

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 7/230 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER L  +  A + A+E    K+ F+  +S+ELR+PLT ++    +L    +  L  +   
Sbjct: 271 ERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLDM--IPDLPDQARA 328

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  +  +   L++D+LDL  V  G ++L+  T+ ++++++ V +   +++      
Sbjct: 329 SVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQVKQQD 388

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V  +      +ADR RL Q+   ++ NA  F+  G  + ++   +      SV++ G 
Sbjct: 389 VHVYKEATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTRDERMHVQISVEDTGI 448

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I  D    +FN F     +  R+  G+GLGL+I ++  ++HGG V+  S
Sbjct: 449 GIEPDQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGTVTAQS 498


>gi|257094698|ref|YP_003168339.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047222|gb|ACV36410.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 918

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E NE L++ D +K+  +  V++ELR+PLT+I  F++LL+      L  ++ +++  I 
Sbjct: 670 LQEANERLQELDRVKDDIMSSVTHELRTPLTSIRAFSELLRDDPKMHLADRE-RFLGLIV 728

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + +  L  L+N  LDLA +++G    N   + L +++ +   + +    E +  + +   
Sbjct: 729 SEAERLSRLINQTLDLAKIESGRADWNGCELDLKEVVEQSLAATSQLFREKDAHVDLDLP 788

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI-PE 732
             L   +ADR RL+Q+   +LSNA  F  +G+  +    R   D +  SV +NG  I PE
Sbjct: 789 DNLPLILADRDRLIQVMLNLLSNAAKFLVQGAGRVSVKLRVLADALEVSVSDNGPGIRPE 848

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           D  + +F +F  V +    +  G GLGL I    +   GG + + S   EG T
Sbjct: 849 DQ-ELIFEKFRQVGDTMTAKPAGTGLGLPISRRIVEHFGGRLWVESVPGEGAT 900


>gi|253580705|ref|ZP_04857969.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848076|gb|EES76042.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 927

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 126/240 (52%), Gaps = 15/240 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+  K+ F+ ++S+++R+P+  ++G+++L+K       + K   Y E +  S  +LL++
Sbjct: 541 KANAAKSEFLFNMSHDIRTPMNALLGYSELIKRE---LTDPKLLDYQEKMEQSGNLLLSI 597

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N++LD+A +++G ++L+   + + D+   + +    +  +  I +K+  D K    + D
Sbjct: 598 INNVLDMARIESGKVELDEDYVKIRDIYQGIYKIFQAEAEKKCIHLKMEYDVKHEHVICD 657

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI---FSVKNNGSSIPEDMCKS 737
             +  +IF  ++SNA+ +++ G  V ++      D  D++     V + G  + E+   S
Sbjct: 658 ETKNKEIFLNLISNAVKYTASGGRVTIRITELDCDRKDYVRIRTQVIDTGIGMSEEFLPS 717

Query: 738 VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EG---VTTINCRIPSK 791
           +F  F    N   G+  G GLG+ I++ +I++  G + + S   EG     T+  RI  K
Sbjct: 718 LFEAFARERNTTDGKIAGTGLGMPIIKKYIDMMYGTIEVESKQGEGSKFTVTLEYRIADK 777


>gi|229551747|ref|ZP_04440472.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|258539146|ref|YP_003173645.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314878|gb|EEN80851.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|257150822|emb|CAR89794.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
          Length = 555

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 32/354 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ID+L  GV +   +  + L N A   L   +            I      Y ++   + L
Sbjct: 222 IDNLPLGVMLIDTNKDVILHNHAMSQLLGHQ------------IPQPRHNYLDDVKTYAL 269

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              I  +F  E+   Q    L +   ++ S+IPL    + L  + +   V          
Sbjct: 270 ARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRLQVLVILYDV---------- 319

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASS 617
             LR+ ++++  FV +VS+EL++P+T I GF + L +   G+ N   +  ++++ I   S
Sbjct: 320 TYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLS---GAKNDPATLDKFLKIIFDES 376

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L+NDIL L+  ++   +   + + L  L+++  +++A  + +  IR++V     L
Sbjct: 377 KRLTQLINDILTLSRPESN--QTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDL 434

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              V D ++L QI   +L+NA+ ++     V + A    G    +V + G  IPE     
Sbjct: 435 -QVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETEQAR 493

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF  V  A      G GLGL+IV   +    G V++SS     +T    +P
Sbjct: 494 IFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLP 547


>gi|172037421|ref|YP_001803922.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698875|gb|ACB51856.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 418

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 118/237 (49%), Gaps = 4/237 (1%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           KN  L++A   ++ F+  +S+ELR+P+  I+GF+ LL       L  +Q   ++ I  +S
Sbjct: 178 KNLQLQEASRRQSQFLATISHELRTPMNAIMGFSQLLLRQYPDPLTDQQIDIIQRIFNNS 237

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+N++LD + ++ G M LN     L+ L+    + +++     N+ + V      
Sbjct: 238 QNLLTLINEVLDFSKLEIGQMDLNIGKFDLDILVRFTVEELSSLTLNKNLSLNVDIHLAN 297

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCK 736
              + D+  L +I   +LSNA+ F+  G  + +K    N + I  ++++ G  I  +  K
Sbjct: 298 NQVINDKNFLKRILINLLSNAIKFTPAGE-IWVKVWEMNPERIAITIEDTGVGIAPEHLK 356

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++F  F  V      Q  G GLGL+IV S + +  G + ++S  E  +     IP +
Sbjct: 357 TIFTPFHQVDQTLTRQHLGTGLGLAIVYSLVKMMQGEIHVTSQLEQGSVFRVEIPRR 413


>gi|301164848|emb|CBW24408.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 638R]
          Length = 766

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 5/235 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T S R  + L E N+      E +   +  ++++ ++PL +IIG+TDLL      + +
Sbjct: 247 DITRSNRYRKELEEANKRAEALLEAREKLMLAITHDFKAPLGSIIGYTDLLTGL---TTD 303

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y++ + +SS  LL LV+D+LD   +D    ++N  T     L  E++ S      
Sbjct: 304 KRQRFYLDNMKSSSQHLLKLVSDLLDFHRLDLNKAEVNRVTFNPAQLFEEIRISFKPLTD 363

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             ++ +    D +L G F++D  R+ QI + +LSNA+ F++KGS + L     +      
Sbjct: 364 AKHLTLSCSIDAELDGRFISDPLRIRQIVNNLLSNAVKFTAKGS-IALNITYHSSSVRIE 422

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           V + G  +     + +F  F          G GLGLSIV   + L  G + + S+
Sbjct: 423 VVDTGKGMAPGDREKIFQEFTRLPGAQGEEGFGLGLSIVHKLVTLLEGSIRVQST 477


>gi|317049978|ref|YP_004117626.1| osmosensitive K channel signal transduction histidine kinase
           [Pantoea sp. At-9b]
 gi|316951595|gb|ADU71070.1| osmosensitive K channel signal transduction histidine kinase
           [Pantoea sp. At-9b]
          Length = 891

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 131/264 (49%), Gaps = 13/264 (4%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q ++ TF  +  +     AL++   A R A E   ++N+ +  +S++LR+PLT + 
Sbjct: 621 IPEQQRLVETFTVLIANALERMALSQSEAASRLAAEREQLRNALLSALSHDLRTPLTVLF 680

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           G  ++L    +  L S+QS+YV     I   +   + LV+++LD+A + +G + L    +
Sbjct: 681 GQAEML----MLDLASEQSKYVAQANQIREQTLSTIRLVSNMLDMARIQSGGLNLREEWV 736

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L++++     S+   +  ++  + + ++  L     D   L ++F+ I+ N++ ++   
Sbjct: 737 ALDEVIGGALSSMGPSLKGHDFTLDLPAE--LVLIKGDSSMLERVFTNIIENSLKYAGNA 794

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
           +   + A R+N     ++ ++G  I  D    +F++F          GVGLGL+I ++ +
Sbjct: 795 AQHGIHAWRENARLEIAIWDSGPGIAPDALTRIFDKFTRGDKESAVPGVGLGLAICKTIV 854

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             HGG +   +  EG  +    +P
Sbjct: 855 ESHGGRIWAENRAEGGASFRLSLP 878


>gi|90415638|ref|ZP_01223572.1| sensor histidine kinase with a response regulator receiver domain
           [marine gamma proteobacterium HTCC2207]
 gi|90332961|gb|EAS48131.1| sensor histidine kinase with a response regulator receiver domain
           [marine gamma proteobacterium HTCC2207]
          Length = 1142

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 137/260 (52%), Gaps = 11/260 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R +  L +  E    A+  K+ +++ +S+ELR+PL +++G+  LL+ 
Sbjct: 657 QTQLLINEIKAHERTDLELQQSKEKADAANIAKSRYLERISHELRTPLNSVMGYAQLLEG 716

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L  ++S  ++ + +SS  L +L+  ++D++ ++AG + L+ + + +  ++ ++  
Sbjct: 717 ADDIPLPRRES--IKVMRSSSEHLTDLIEGLVDISKIEAGRLDLHRNKVDMLAMIEQLMY 774

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +    NI +      +L   V AD +RL Q+   ++SNA+ F+ +GS  +    R+
Sbjct: 775 MFQIQAQSKNISLNFSHQERLPETVFADGKRLRQVMINLISNAIKFTPEGSVSVDLKYRN 834

Query: 716 NGDFIFSVKNNGSSIP-EDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              + FSV + G  I  ED+ +    F R  +  H  Q  G GLGL+I ++ ++  GG +
Sbjct: 835 QVAY-FSVTDTGVGIEDEDISRISEAFVRIANPMH--QVAGSGLGLAITQALVHRMGGDL 891

Query: 773 SISSS-DEGVT-TINCRIPS 790
           SI S   EG T T++  +PS
Sbjct: 892 SIESRFGEGSTFTVSLMLPS 911


>gi|78776617|ref|YP_392932.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
 gi|78497157|gb|ABB43697.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
          Length = 896

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 125/233 (53%), Gaps = 19/233 (8%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A E K+ F+ ++S+E+R+PL  I+GFT+LLK S    L  +QS++V+ I  SS  LL 
Sbjct: 376 QEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDS---GLQQEQSEFVDIIEKSSENLLE 432

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---ATKMHENNIRIKVISDGKLGS 679
           ++N+ILDL+ +++   KL    I+ N ++ E + ++   A +  E +I +    D  L  
Sbjct: 433 IINNILDLSKIESN--KLEIENILFNPIV-EFESAVEVYAVRASEKHINLGCFIDPSLEF 489

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPE 732
           ++  D  +L +I   +LSNA+ F++    + +   + + D        F ++++G  +  
Sbjct: 490 WLKGDPTKLKEIIINLLSNAVKFTNNAGFINVNIRKIDSDKSTKTRVRFEIQDSGIGVTS 549

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           +    +F  F        R+  G GLGL+I  +F+ L GG + + S   EG T
Sbjct: 550 EQKSKIFEAFSQADTSITRKYGGTGLGLTISSNFVELMGGKLDLESKLAEGTT 602


>gi|303246184|ref|ZP_07332465.1| histidine kinase [Desulfovibrio fructosovorans JJ]
 gi|302492580|gb|EFL52451.1| histidine kinase [Desulfovibrio fructosovorans JJ]
          Length = 540

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 33/251 (13%)

Query: 546 TDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--------- 595
           TD++ R    L + N  LR+ D +K+ F+  V+++LR+PLT+++GF  L +         
Sbjct: 254 TDTLARQAEELADANNRLRELDALKSGFLATVTHDLRTPLTSVLGFAKLTRRDFIKDFMP 313

Query: 596 ----TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
               + KL    ++ +  +  I      L  LVND LDL+ +++G +  N       D++
Sbjct: 314 FSEVSDKLRRKGNRIADNLGIIETEGARLTRLVNDFLDLSKIESGRLNWNDQDTDPADVI 373

Query: 652 NEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                ++  + +E N R+ ++ D  G L     D  RL+Q+   +L+NA  ++ +G  V 
Sbjct: 374 RAAVAAVGGE-YEQNERLALVVDIPGALPRLCLDPDRLMQVLVNLLTNAARYTGEGE-VT 431

Query: 710 LKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG---------VGLGLS 759
           L A R  NG   F V + G  IP    + +F++F        R+G          GLGL+
Sbjct: 432 LSAGRLPNGRMEFRVADTGPGIPAQERERIFDKFYQT-----RQGDTTATTKKGTGLGLA 486

Query: 760 IVESFINLHGG 770
           I +  +  +GG
Sbjct: 487 ICKQIVERYGG 497


>gi|297155950|gb|ADI05662.1| two-component system sensor kinase [Streptomyces bingchenggensis
           BCW-1]
          Length = 389

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA R+ +      +  V++ELRSPLT++ GFT  L        + ++   +E + A + 
Sbjct: 147 TEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAN 206

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  L+ ++LD++ +D+G +++    + +   +    Q++    H +  R  +   G L 
Sbjct: 207 RVTRLIAELLDISRIDSGRLEVRRQPVDIAAAVRRHVQALTASGHSSG-RFLIKVRGPLP 265

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDF---IFSVKNNGSSI 730
              AD  ++ Q+   +L NA+       T+     ++K A +         +V + G  I
Sbjct: 266 GLWADPDKVDQVLGNLLENAVRHGEGTVTIEVAPELVKPAAEGPPVERTAVTVSDEGPGI 325

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           PE+    VF RF   + RG   G GLGL IV+  +  HGG +++  +  G       +P
Sbjct: 326 PEESMSRVFTRFWRGSKRG---GTGLGLYIVKGIVEAHGGTITVGRAHGGGAEFRFTLP 381


>gi|297545524|ref|YP_003677826.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843299|gb|ADH61815.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 470

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L + ++++  FV +VS+ELRSPLT+I G+ D +    +     K   Y++ +   +  + 
Sbjct: 241 LEQLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPV--EKACDYLKIVQKETRRMS 298

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D L++  +++G   L+ +   +N+L+         ++ E ++ +KV  +      +
Sbjct: 299 RLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVI 358

Query: 682 ADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVF 739
           AD+ ++ Q+ S ++ NA+ FS  KG   I    +D+  FI ++K+NG  I PED  + ++
Sbjct: 359 ADKDKIEQVLSNLIDNAIKFSKEKGIIHIFTETKDDKVFI-TIKDNGIGISPEDQ-EHIW 416

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +RF        + G GLGL IV+  IN H   + + S
Sbjct: 417 DRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVES 453


>gi|315499005|ref|YP_004087809.1| response regulator receiver sensor hybrid histidine kinase
           [Asticcacaulis excentricus CB 48]
 gi|315417017|gb|ADU13658.1| response regulator receiver sensor hybrid histidine kinase
           [Asticcacaulis excentricus CB 48]
          Length = 527

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + L    E    A + K  F+  +S+E+R+PL  + G +D+L  S    LN  Q + 
Sbjct: 138 RQRQELQAAKERAEAASQAKTDFLATMSHEIRTPLNVVTGLSDILIKS---PLNDDQYRI 194

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE +  ++ +LL L+ND+LD++ ++   + L  +     D++ ++K   A  +    +  
Sbjct: 195 VETLRTNAQLLLRLINDLLDISRIEDNKIDLESTAFRPADVMEDLKMMFAQDIERKGLDF 254

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNN 726
            +    +  +   DR RL QI   ++SNA+ F+++G   ++  A+  GD +    +V++ 
Sbjct: 255 ALTDHTQGVTVRGDRTRLQQIVMNLISNALKFTARGEIELIGEAQARGDRVDLCLAVRDT 314

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           G  IPE     +F++F        RR  G GLGLSI  + + + GG +++ S +
Sbjct: 315 GIGIPEAKRSQIFDKFTQADASITRRFGGSGLGLSIARALVEVMGGEIAVESEE 368


>gi|158338274|ref|YP_001519451.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158308515|gb|ABW30132.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 410

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 169/394 (42%), Gaps = 66/394 (16%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +D + EGV     +G +   NPA   +  W T E    P   + + +     +Y + +  
Sbjct: 36  LDAIGEGVYGLDIEGNVTFVNPAAAKMIGWSTAELIGQPMHAVLHHSHPNGSHYPKEN-- 93

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSV----------LEYSIIPLPNAQ-----TMLTF 542
                I  +F D      G +  ++D V          +EY   P+ + Q      ++TF
Sbjct: 94  ---CPIYAAFRD------GKVYRVTDEVFWRRDGTCFPVEYISTPIHDEQGQIVGAVVTF 144

Query: 543 VNVTDSVRAERALTEKNEAL------RKAD------------EIKNSFVQHVSYELRSPL 584
            ++T    AE  L + NE L      R A+             +K+ FV  V +E R+PL
Sbjct: 145 CDITQRQWAESVLKQTNEVLESKVRERTAELEQVNQQLQELSALKSRFVAMVCHEFRNPL 204

Query: 585 TNIIGFTDLLKTSKLGSLNSK-----QSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            NI      L  S L   +S+     QS+Y+  I+ +   +  +++DIL +  +DA  M+
Sbjct: 205 NNIA-----LSISSLNRYHSRLTVRQQSEYLAGIAENVERMTEMIDDILVIGKLDAKRME 259

Query: 640 LNYSTIVL----NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           L  + + L     DL+ EV+      M  +++ + +    +L + + D Q L  I + IL
Sbjct: 260 LKSAEVDLVAFCQDLVAEVQ-----SMAPHHVVLLICRHRQLITPI-DVQLLRSILTNIL 313

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
            NA+ +S +   +  K +R      F + + G  +  +    +F+ F    +     G G
Sbjct: 314 HNAIRYSPEDGEIQFKVSRRKHIITFQISDQGMGVSPEEQSLIFDPFYRGKNVSNVPGTG 373

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGLSIV+ F+ L  G +++ S     TT   R+P
Sbjct: 374 LGLSIVKQFVELLQGTITLDSRIGVGTTFTVRLP 407


>gi|57867173|ref|YP_188828.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
 gi|57637831|gb|AAW54619.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
          Length = 565

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 124/222 (55%), Gaps = 13/222 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K + ++  FV +VS+EL++P+T+I GF + L     G+ N +QS   ++  I   S  
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNR 393

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           + +LV D+LDL+ ++    +++NY    L++L   +  ++ T+ +  N RIK+ S+ +  
Sbjct: 394 IESLVTDLLDLSHIEQQKELEINYMN--LSELAINIIDNLQTQAY--NKRIKIQSEIEKD 449

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             + A   ++ Q+ + +LSNA+++SS+ + VI++  R++      +++ G  I E   K 
Sbjct: 450 VIIEAHENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKR 509

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F RF  V  A      G GLGLSI +  +  H G + + S+
Sbjct: 510 IFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIGVKSA 551


>gi|16330590|ref|NP_441318.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653081|dbj|BAA17998.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 950

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 116/233 (49%), Gaps = 10/233 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           ++ +L E       A + K+ F+ ++S+E+R+P+  IIG ++L+  +    L S+Q  Y+
Sbjct: 440 SQESLLEAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQT---DLTSQQRNYL 496

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  +  +LL ++N+ILD + ++AG ++L      + +++  +   +  +     + + 
Sbjct: 497 QKVQYAGELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLN 556

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
              D ++    V DR RL QI   + +NA+ F+++G   I    LK   +     FSV +
Sbjct: 557 FHLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQGEITIRGQLLKTENEQTKLQFSVTD 616

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            G  +  D    +F  F        R+  G GLGL+I +S   L GG + + S
Sbjct: 617 TGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLES 669


>gi|332140998|ref|YP_004426736.1| Signal transduction histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551020|gb|AEA97738.1| Signal transduction histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 667

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 9/255 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  NV  SV+    L  + +    A + +   +  +S+EL++PL    G T +L+  K  
Sbjct: 266 TCQNVNKSVQLRLELDARRKEAEAASKERGMLLSRISHELKTPLN---GITGMLQAIKFE 322

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + ++ + +  +    S+  LL+L+ND+LD  ++  G   LNYS   +  L  ++      
Sbjct: 323 NKDNVRIRKADIALHSADRLLSLINDVLDYTSIINGEFSLNYSDFCVRSLAEDIVDEFKN 382

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           K  +  +R+  +      ++V  D  R+ Q+ + +LSNA+ F++KG   I    +  GD 
Sbjct: 383 KCSDKGVRLYAVLSFDDNTYVNGDAARISQVITNLLSNAVKFTAKGYISIQVTLKQQGDI 442

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              + SV++ G  + +D+   +F  F ++         G GLGLSIV   +   GG + +
Sbjct: 443 PILLASVEDTGVGMSDDILSRIFRPFQNDTDSASEELNGNGLGLSIVNQLVGKMGGELEV 502

Query: 775 SSSDEGVTTINCRIP 789
            S+    T  +  IP
Sbjct: 503 RSNVGKGTCFDVAIP 517


>gi|116619215|ref|YP_821371.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116222377|gb|ABJ81086.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 498

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 498 DLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVN-VTDSVRAE 552
           DL AA      SFD E+      + L    +   +++  LP+ QTM   VN V  SV   
Sbjct: 199 DLLAAAEVDHVSFDPEKHIATAPVRLGGRPLGSMALLGELPSEQTMSAIVNLVAISVEKA 258

Query: 553 RALTEKN--EALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQY 609
           RAL + +  EA R+++ +K++ +  +++++++PLT+I    T LL  S      +   + 
Sbjct: 259 RALEDASHAEAARQSEVLKSALLDSLAHDIKTPLTSIKAAVTSLLSNSA-----AADQEL 313

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I+  +  L  L  +++ +A V+AG + L    + + +L+      +  +   +   +
Sbjct: 314 LTIINEEADRLNQLAAEVIAMARVEAGKLHLEKRPVNVAELIEGALGELGAR---SGHAV 370

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V    +L     D + + Q+  ++L NA+ +S +G+ V + A R     +  V + G  
Sbjct: 371 TVNLSPRLPRASCDPEFVQQVVKQLLENALKYSPEGAEVTVSAERKGAKIVVGVADRGPG 430

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           I E+    VF++F     HR + +G G+GL+I +  I  HG  + + S  E  +     +
Sbjct: 431 IDEEERARVFDKFFRGKRHRFETKGTGMGLAIAKGIIEAHGEKIWVESEPEHGSAFYFSL 490

Query: 789 PSKE 792
           P  E
Sbjct: 491 PLAE 494


>gi|307149960|ref|YP_003885344.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
 gi|306980188|gb|ADN12069.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
          Length = 610

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 10/237 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-----SKLGSLNSKQ--SQYVEYIS 614
           L K + +K++F++ +S+ELR+P+++I+   + L+       + G L S Q  +Q +E   
Sbjct: 372 LEKLNNLKDNFLKTISHELRTPMSSILLAAETLEKLIEIEQEEGRLKSSQRFNQVLEIFK 431

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S      LVND+L L  +DA    L    I L   L E+ Q   +K       + +   
Sbjct: 432 ESCQQQNKLVNDLLTLCYIDADSTTLFPDWIDLRIWLPEIVQPFLSKTGSQQQHLILDIS 491

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +  F  D   L +I  ++L+NA  +S KG T+ + A   + + + SV N+G  IP + 
Sbjct: 492 PSILPFECDISTLERIVIELLNNACKYSPKGETITVAAWMKDNNILISVINSGVEIPAEE 551

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F++F  +  A   +  G G+GL++V   + L G  + + S + G T+   +IP
Sbjct: 552 FERIFDQFYRIPKADPWRYNGTGIGLTLVRKLVGLLGATIEVESQN-GKTSFTVQIP 607


>gi|258625362|ref|ZP_05720259.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582353|gb|EEW07205.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 571

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 7/221 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV  V++E+R+PL  I+G  DLL T+    L  +Q +Y+  I  S  +L  ++ND++D  
Sbjct: 204 FVAMVNHEIRTPLVGILGSADLLGTT---YLTEEQKKYLADIQHSGEMLNFVINDLIDFN 260

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            + +G++++         L N V   ++ K    N  +  I    L  +V  D++R+ QI
Sbjct: 261 KLHSGLLRITAQPFEWLQLHNYVYNLVSIKTRNKNTTLNFIYKDTLPEYVYGDKKRIQQI 320

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
              ++ N++ F+ KG   I  +  D+      VK+ G  IPE   + +F+ F  V  +  
Sbjct: 321 LLNLIGNSLKFTLKGEINIYISWADD-KLKIDVKDTGIGIPEYAQQKIFDAFYQVDRSST 379

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G+G+GL+I  S   L  G +S+ SS+   +  +  +P
Sbjct: 380 RQFEGLGMGLAICLSLTKLMNGLLSVKSSEGEGSEFSVVLP 420


>gi|239933709|ref|ZP_04690662.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
          Length = 543

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 12/232 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +     FV  VS+ELR+PL  +   TD+L     G    +  + +  IS  +  L 
Sbjct: 305 LRRLEAQGRRFVADVSHELRTPLAAMSAVTDVLDLEGEG----ETGEALRLISEGTNRLS 360

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+++++  DAG  +LN   I   DL   V++++A++  +  +  ++   G+L + V
Sbjct: 361 GLVNDLMEISRFDAGAAELNRDEI---DLAESVRRTVASRWWQEQVETRLPGPGELRARV 417

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKNNGSSIPEDMCKSV 738
            D +RL  + + ++ NA+        + +    D       +  V +NG  I E+    +
Sbjct: 418 -DPRRLDVVTANLIGNALRHGEPPVRLTMGVRVDGTGMAWAVIEVTDNGPGIAEEAMPHI 476

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF  ++  R +    GLGL+I    + LHGG +  ++   G       +P
Sbjct: 477 FERFYKASTSRARSESSGLGLAITAENVRLHGGRIRAANLPRGGAVFTVELP 528


>gi|226309918|ref|YP_002769812.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226092866|dbj|BAH41308.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 469

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 122/235 (51%), Gaps = 7/235 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+L++ DE++  FV +VS+E++SPLT+I GF+  +++   G  N ++  Y+  I   S  
Sbjct: 230 ESLKQLDEMRQEFVSNVSHEIQSPLTSIQGFSQAIRSG--GVTNEQRETYLTIIEEESRR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L   +L LA++D        +   L++ + +V   +  +  +  + +++        
Sbjct: 288 LSSLSKQLLTLASLDKETGLYEPTRFRLDEQIRQVLLVLEHQWQQKKLTMELTLPETF-- 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            V D+Q L Q++  +++N++ F+ K  ++ +   +D    + ++++ G  + E+  + VF
Sbjct: 346 IVGDKQLLNQVWMNLIANSIKFTPKAGSIYIMIQKDT-RIVVTIRDTGIGMSEEEQEHVF 404

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +RF        R   G GLGLSIV+  + +  G + I S     TT+   +P+ E
Sbjct: 405 DRFYKGDKSRNREATGSGLGLSIVQKILQVAKGGIHIQSRIGEGTTVTVSLPTGE 459


>gi|254283696|ref|ZP_04958664.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
 gi|219679899|gb|EED36248.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
          Length = 512

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYISASSTILLNLVNDIL 628
           F+ +VS+ELR+PL  IIG++++L+          Q Q+   +  I  S   LL+L+NDIL
Sbjct: 281 FLANVSHELRTPLNAIIGYSEMLQDELSDGQQLDQDQFHHDLGTIIFSGRQLLSLINDIL 340

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ ++ G M ++  T+    L+ ++  +++  + + N  + +     L    +D  +L 
Sbjct: 341 DLSKMETGKMTVSLETVDPAALIYQICDALSPLITQKNNTLTLSIADDLPEMESDPAKLQ 400

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           QI + + SNA  F+  G   ++     N   + +VK+NG  I E    +VF  F    ++
Sbjct: 401 QIVTNLFSNACKFTEDGVIEVIARIEKNS-LLIAVKDNGIGIAEAQQANVFEAFEQAESS 459

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  G GLGL+IV  F  + GG +++ S+    +T    +P
Sbjct: 460 TGSKYGGTGLGLAIVREFCRMLGGDITLESTPGKGSTFTATLP 502


>gi|162437479|dbj|BAF95556.1| cdsS [Pseudoalteromonas piscicida]
          Length = 772

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  +AL  A + K  F+  +S+ELR+PL  I+G T ++  +    L ++Q  +   + +S
Sbjct: 265 EAEQALETAYKDKGKFIATLSHELRTPLNGIVGLTRMMLDT---DLTAQQKSWCNTVFSS 321

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L N+ NDI+DL  +D   + +   +I ++D +N+V         +  +   +   G 
Sbjct: 322 AETLGNIFNDIIDLDKIDREQLDIATDSINVSDFINDVVNFAGLIADQKGLEFTINRSGI 381

Query: 677 LGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731
           L  + + D  RL Q+   +++NA+ F+ KG+ V L+  R+N D       SV + G  I 
Sbjct: 382 LDVYALLDPTRLRQVLWNLINNAVKFTHKGN-VTLECRRENRDDGPWLTISVIDTGMGIS 440

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  + +F  +    +A      G G+GL++ ++ +    G ++++S +   +  +  IP
Sbjct: 441 EDQLERIFEMYYKAPDASGSNAIGSGIGLAVTKALVQAMKGTIAVTSQEGKGSRFDVEIP 500


>gi|42518152|ref|NP_964082.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|268318622|ref|YP_003292278.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|41582436|gb|AAS08048.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|262396997|emb|CAX66011.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|329666464|gb|AEB92412.1| two-component system histidine kinase [Lactobacillus johnsonii DPC
           6026]
          Length = 616

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 10/236 (4%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K +  +  FV +VS+ELR+PLT++  + + L        N    Q++  I   +  ++ 
Sbjct: 368 QKNEREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIA-PQFLHVIQDETERMIR 426

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-------QSIATKMHENNIRIKVISDG 675
           ++ND+L L+ +D G+ K++   + LND +N V        +S   K H+    IK     
Sbjct: 427 MINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKTHKKKYSIKREFPH 486

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  +++Q+   I++NA+ +S  G  + ++  +     I S+ + G  IP    
Sbjct: 487 QALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLGIPRKDL 546

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A   ++ G GLGL+I +  +  H G +   S++   +T    +P
Sbjct: 547 NKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISLP 602


>gi|262171096|ref|ZP_06038774.1| hypothetical protein VII_001912 [Vibrio mimicus MB-451]
 gi|261892172|gb|EEY38158.1| hypothetical protein VII_001912 [Vibrio mimicus MB-451]
          Length = 571

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 7/221 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV  V++E+R+PL  I+G  DLL T+    L  +Q +Y+  I  S  +L  ++ND++D  
Sbjct: 204 FVAMVNHEIRTPLVGILGSADLLGTT---YLTEEQKKYLADIQHSGEMLNFVINDLIDFN 260

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            + +G++++         L N V   ++ K    N  +  I    L  +V  D++R+ QI
Sbjct: 261 KLHSGLLRITAQPFEWLQLHNYVYNLVSIKTRNKNTTLNFIYKDTLPEYVYGDKKRIQQI 320

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
              ++ N++ F+ KG   I  +  D+      VK+ G  IPE   + +F+ F  V  +  
Sbjct: 321 LLNLIGNSLKFTLKGEINIYISWADD-KLKIDVKDTGIGIPEYAQQKIFDAFYQVDRSST 379

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G+G+GL+I  S   L  G +S+ SS+   +  +  +P
Sbjct: 380 RQFEGLGMGLAICLSLTKLMNGLLSVKSSEGEGSEFSVVLP 420


>gi|258621314|ref|ZP_05716348.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586702|gb|EEW11417.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 571

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 7/221 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV  V++E+R+PL  I+G  DLL T+    L  +Q +Y+  I  S  +L  ++ND++D  
Sbjct: 204 FVAMVNHEIRTPLVGILGSADLLGTT---YLTDEQKKYLADIQHSGEMLNFVINDLIDFN 260

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            + +G++++         L N V   ++ K    N  +  I    L  +V  D++R+ QI
Sbjct: 261 KLHSGLLRITAQPFEWLQLHNYVYNLVSIKTRNKNTTLNFIYKDTLPEYVYGDKKRIQQI 320

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
              ++ N++ F+ KG   I  +  D+      VK+ G  IPE   + +F+ F  V  +  
Sbjct: 321 LLNLIGNSLKFTLKGEINIYISWADD-KLKIDVKDTGIGIPEYAQQKIFDAFYQVDRSST 379

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G+G+GL+I  S   L  G +S+ SS+   +  +  +P
Sbjct: 380 RQFEGLGMGLAICLSLTKLMNGLLSVKSSEGEGSEFSVVLP 420


>gi|255281905|ref|ZP_05346460.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255267578|gb|EET60783.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 356

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 117/241 (48%), Gaps = 5/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E++     E L   + ++  F+ + S+E ++P+ +I GF  LL+   L    +++ +Y+ 
Sbjct: 118 EKSFNSAAEELEHTEMLRGDFINNFSHEFKTPIVSIAGFAKLLRRGNLSE--AQKEEYLA 175

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   +  L  +  ++L+L  V+   +  N ++  L++ +      +A K  + ++   +
Sbjct: 176 VIEEEALRLSEMATNMLNLTKVENQTILTNVTSYNLSEQIRSTVLLLAEKWTQKDLEPDL 235

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D +  +  A+ + L QI+  ++ NA+ FS  G+ +         D   S+ N G+ IP
Sbjct: 236 --DFQEYTIEANEELLKQIWVNLIDNAVKFSEPGNLISFHITEKADDLFVSISNRGTEIP 293

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           E+    +FN+F          G G+GL+IV+    LH G + ++S ++  TT   R+P  
Sbjct: 294 EESLNRIFNKFYQADESHSSEGNGIGLAIVKKVAELHNGDIYVTSENKR-TTFTVRLPKH 352

Query: 792 E 792
           +
Sbjct: 353 Q 353


>gi|157146700|ref|YP_001454019.1| sensor protein KdpD [Citrobacter koseri ATCC BAA-895]
 gi|157083905|gb|ABV13583.1| hypothetical protein CKO_02466 [Citrobacter koseri ATCC BAA-895]
          Length = 895

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 20/269 (7%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  S      LT   E  R A E   I+N+ +  +S++LR+PLT + 
Sbjct: 625 IPEQQRLLETFTLLVASALERLTLTASEELARLASERESIRNALLAALSHDLRTPLTVLF 684

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  ++L T  L S  S  ++    I         LVN++LD+A + +G   L    + L 
Sbjct: 685 GQAEIL-TLDLASEGSPHARQASEIRQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLE 743

Query: 649 DLLNEVKQSIATKM-HENNIRIK-----VISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           +++    Q +   + H  N+ +      V  DG L           ++   +L NA+ ++
Sbjct: 744 EVVGSALQMLEPGLSHPINLSLPAPMTLVHVDGPL---------FERVLINLLENAVKYA 794

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
              + + + A  ++      V +NG  IP+   KS+F++F          GVGLGL+I +
Sbjct: 795 GSQAEIGIDAHVEDEHLQLDVWDNGPGIPDGQEKSIFDKFARGNKESAVPGVGLGLAICQ 854

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + + +HGG +S  +  +G       +P +
Sbjct: 855 AIVEVHGGTISAHNRPQGGACFRVTLPQE 883


>gi|301310707|ref|ZP_07216646.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300832281|gb|EFK62912.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 828

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 20/231 (8%)

Query: 562 LRKADEIKNSFVQH-------VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L KA ++  S ++        +S+++R+PL++IIG+ +LL        + +Q  Y+E + 
Sbjct: 323 LEKAKQVAESLLRSREKLMLTISHDIRAPLSSIIGYIELLLRRHP---DERQQYYLENMK 379

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR----IK 670
            SS  +L+LVND+LD   +++G M+++     +  L +E+  S         +R    +K
Sbjct: 380 GSSDHILSLVNDLLDFQRLESGEMEVHSVPFRVPVLFDEIYTSFQPIAEAKGLRFVLNLK 439

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNN 726
               G++  ++ D  R+ Q+   +LSNA+ F+  G  V+L    K +  N     +V ++
Sbjct: 440 PEETGQV--YMGDPIRIRQVVGNLLSNAIKFTEAGRVVLLVSLQKLSIINYQLSITVSDS 497

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           G  IP++  + +F  F   A   +  G GLGLSI    ++L  G +++ S+
Sbjct: 498 GPGIPKEEQERIFGEFTRLADTEEAEGFGLGLSITRKLLSLMNGTLALDST 548


>gi|229093968|ref|ZP_04225059.1| hypothetical protein bcere0021_46880 [Bacillus cereus Rock3-42]
 gi|228689450|gb|EEL43264.1| hypothetical protein bcere0021_46880 [Bacillus cereus Rock3-42]
          Length = 357

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 126/245 (51%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 113 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 172

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G+++LN   I +++LL ++ + +   + ++++  
Sbjct: 173 IAY--TKSQRLESLIDELFEITRMNYGMLQLNKKPIDISELLIQLDEELYPLLEKHHLEA 230

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DN + +  V N G S
Sbjct: 231 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNEEVVVQVMNYGDS 289

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 290 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTMFEVR 348

Query: 788 IPSKE 792
           +P  E
Sbjct: 349 LPKDE 353


>gi|227873345|ref|ZP_03991606.1| integral membrane sensor signal transduction histidine kinase
           [Oribacterium sinus F0268]
 gi|227840823|gb|EEJ51192.1| integral membrane sensor signal transduction histidine kinase
           [Oribacterium sinus F0268]
          Length = 469

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E ++K+D+ +  F+ +VS++ RSPLT+I G+ + +    +      + +Y+  + + +  
Sbjct: 234 EEIQKSDDYQRQFIANVSHDFRSPLTSIKGYLEAMLDGTIP--KEAEEKYLLRLISETER 291

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L   +L L  +D G   LN S   LN ++ EV  S   +  +  +   ++   K   
Sbjct: 292 LSKLTQSMLSLNKLDQG-SSLNRSNFDLNRMIREVCASFEMQCQKKKLGFSLVFAEKKQM 350

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  ++ Q+F  +L NA+ FS + S + ++  +     +  +K+ G  IP+     ++
Sbjct: 351 VNGDYPKIQQVFYNLLDNAVKFSKEDSEIQIRTEQKGTKVLVGIKDQGIGIPKKDLGKIW 410

Query: 740 NRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  ++  RG+ + G GLGL+IV+S I  HG ++   S++   T  +  +P+ E
Sbjct: 411 ERFYKTDISRGKDKAGTGLGLAIVKSIITAHGENIDCVSTEGVGTEFSFSLPAME 465


>gi|108761462|ref|YP_635109.1| response regulator/sensor histidine kinase AsgD [Myxococcus xanthus
           DK 1622]
 gi|108465342|gb|ABF90527.1| response regulator/sensor histidine kinase AsgD [Myxococcus xanthus
           DK 1622]
          Length = 773

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 10/235 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E LR+  E +   V  VS++LR+PL  I     LL+  K G+L   Q + V  I  ++ 
Sbjct: 541 QEELRRRAEFEQQLVGIVSHDLRNPLAAISMSAGLLE--KKGALTEPQKRMVWRIGQATE 598

Query: 619 ILLNLVNDILDL--ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               ++ D+LD   A +  GI  L+  T  L +++++V   +        + ++V  + +
Sbjct: 599 RAARMIRDLLDFTKARLGGGI-ALHRQTTDLREVVHQVVDELLVANPGRRVEVEVQGEVR 657

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            G +  D  R+ Q+ + +L NA+ +S   + V +    +    + SV N G+ IP ++  
Sbjct: 658 -GEW--DSDRIAQVLTNLLGNALAYSPADAPVRVDTRLEGEAALLSVFNGGAPIPRELLP 714

Query: 737 SVFNRFVSNAHR-GQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F      A + GQ  R +GLGL IV+  +  HGG V + SS++  TT   R+P
Sbjct: 715 RLFEPLTRGALKEGQSTRSIGLGLYIVQDIVRGHGGGVEVVSSEQHGTTFTVRLP 769


>gi|118359423|ref|XP_001012951.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           containing protein [Tetrahymena thermophila]
 gi|89294718|gb|EAR92706.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           containing protein [Tetrahymena thermophila SB210]
          Length = 1332

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 119/219 (54%), Gaps = 11/219 (5%)

Query: 555 LTEK--NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +TEK  NE  ++  + K+  +   +++L++PL NII   + +K   L   N+  S+ +E 
Sbjct: 446 ITEKVVNEQNKQQYQYKDQILAIATHDLKTPLNNIICSVESMK---LRQDNTNISEQLEL 502

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S S   ++N++ DILD + ++ G ++LN     L+DL+ ++ Q         NI +K  
Sbjct: 503 VSVSVKQMMNIIKDILDYSALNKGSLRLNIEIFRLSDLIKQIFQLFKLHAQSRNIELKYT 562

Query: 673 SDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI-FSVKNNGS 728
            D  L     V+D  RL+QIF+ +++N++ F+ KGS  I  K+  ++ + I  S+ + G 
Sbjct: 563 IDPFLQELDIVSDPSRLVQIFNNLIANSLKFTVKGSIHIKFKSNPNDRNVIHISITDTGV 622

Query: 729 SIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFI 765
            IP+     +F  F +  H    + +GVGLGL I ++ +
Sbjct: 623 GIPQQYVDQIFKPFQTFNHTEGLKTQGVGLGLIICKTLV 661


>gi|7212861|gb|AAF40475.1|AF227964_1 aerobic respiration control sensor protein [Haemophilus influenzae
           Rd KW20]
          Length = 598

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|330972152|gb|EGH72218.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 595

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 121/266 (45%), Gaps = 13/266 (4%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E K     +  E +I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GL L++ + 
Sbjct: 511 PNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLRLALCKE 568

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S     T     +P
Sbjct: 569 IVQLHGGRMGVYSRPGQGTQFYMALP 594


>gi|331698893|ref|YP_004335132.1| histidine kinase [Pseudonocardia dioxanivorans CB1190]
 gi|326953582|gb|AEA27279.1| histidine kinase [Pseudonocardia dioxanivorans CB1190]
          Length = 492

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 17/246 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ E  +AL ++++ +  F+  VS+ELR+PLT + GF + L    +   +++        
Sbjct: 254 AVNELADALSRSEQRQREFLLSVSHELRTPLTAVRGFAESLADGVVTGDDAR-------- 305

Query: 614 SASSTILL------NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +A +TIL        LV D+++LA ++A   +L+  T+ L  LL+E       +  E  +
Sbjct: 306 AAGTTILREAQRLDRLVGDLMELARLEADDFRLDVGTVDLGALLSEASAVWRARCAEQGV 365

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +V +        AD +RL Q+   +  NA+     G+ ++L      G  +  V++ G
Sbjct: 366 DFRVDAPAHPVPVRADPRRLRQVVDGLAENALRVLPPGAPLVLAVRPGRGAGVLQVRDGG 425

Query: 728 SSIPEDMCKSVFNRFVSNA-HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             +  +    VF R   +A +RG R     G+GL++V   +   GG ++ + + EG    
Sbjct: 426 PGLAAEDYPLVFRRGALHARYRGHRPVGAGGVGLALVHGLVTRMGGTITAAPAPEGGACF 485

Query: 785 NCRIPS 790
              +PS
Sbjct: 486 TVTVPS 491


>gi|268317981|ref|YP_003291700.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335515|gb|ACY49312.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 662

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 129/247 (52%), Gaps = 10/247 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A+++L   ++T+ ++ E  L    E     + +K++ + ++S+ELR+PLT +IGF D++
Sbjct: 399 SAESLLIVRDLTERLQHEAELIRAREEAEAMNRLKSTLLTNLSHELRTPLTTVIGFADVI 458

Query: 595 K-TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +  +  G+L     ++ + I+     LL+L+ +++DLA ++A  +K     ++L + L  
Sbjct: 459 REEAAPGTLF---HEFAQLIADGGRRLLHLMEEVMDLAQLEAQTLKAGRERLLLPERLRP 515

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKA 712
           +  +   +  +  ++ +V     +  + AD + L +    +L NA+ F+ +G  TV  + 
Sbjct: 516 LMATYRARAEQKGLKFRVQQAPGVAVW-ADPELLERAVEHLLDNAIKFTERGGVTVRFRQ 574

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
             D    +  V++ G  IPE     VF+ F   S+       G+GLGL++   F+ + GG
Sbjct: 575 VEDQVGIV--VEDTGIGIPEAALPHVFDEFWQASSGIGRTHEGLGLGLAVARRFVEIMGG 632

Query: 771 HVSISSS 777
            + + S+
Sbjct: 633 RIEVEST 639


>gi|170692375|ref|ZP_02883538.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170142805|gb|EDT10970.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 657

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 116/231 (50%), Gaps = 7/231 (3%)

Query: 552 ERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER L  +  A + A+E    K+ F+  +S+ELR+PLT ++    +L+   +  L  +   
Sbjct: 271 ERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEM--IPDLPDQARS 328

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  +  +   L++D+LDL  V  G ++L+  T+ ++++++ V +   +++      
Sbjct: 329 SVRMIRRNIELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQVKQQD 388

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V  D      +ADR RL Q+   ++ NA  F+  G  + ++   +      SV++ G 
Sbjct: 389 VHVHKDATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTRDERMHVQISVEDTGI 448

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            I  +    +FN F     +  R+  G+GLGL+I ++  ++HGG V+  S 
Sbjct: 449 GIEPEQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGTVTAQSP 499


>gi|167768195|ref|ZP_02440248.1| hypothetical protein CLOSS21_02751 [Clostridium sp. SS2/1]
 gi|167709719|gb|EDS20298.1| hypothetical protein CLOSS21_02751 [Clostridium sp. SS2/1]
          Length = 381

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+     ++++ KN  + +++++L++PLT+II +  LL  S     +  + Q  +YI 
Sbjct: 142 LKEQRRIAEESEQRKNDIIVYLAHDLKTPLTSIIAYLSLLNESP----DMSEEQRAKYIG 197

Query: 615 AS---STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            S   +  L  L+N+  ++   +   + L+     L  LL +V  S A    +  +  K+
Sbjct: 198 ISLEKAKRLGELINEFFEITRYNLQNITLDKKEFYLYVLLEQVMDSFAAVFKQKGLEWKI 257

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D K+  +  D  RL ++F  +L NA+ +    S + +    D  +    V+N G +IP
Sbjct: 258 EVDDKILIY-GDPDRLARVFENLLRNAVSYCYPNSLIEVYGMIDGDNAEILVRNQGKTIP 316

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E    ++F +F  +  A   +  G GLGL+I +  I LH G +   S +E  TT   R+P
Sbjct: 317 EHQLNNLFEKFYRLDEARSSETGGAGLGLAIAKEIIELHDGTIKAKSQNE-YTTFIIRLP 375

Query: 790 SKE 792
            K+
Sbjct: 376 RKK 378


>gi|150008357|ref|YP_001303100.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936781|gb|ABR43478.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 417

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 128/236 (54%), Gaps = 15/236 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +N+ D  + E+ L      L +  E K  F+ ++S+E+R+PL +I+GF++LL + K   L
Sbjct: 175 ININDMKKREKELI-----LMRGYEQK--FLANMSHEIRTPLNSIVGFSNLLASEK--DL 225

Query: 603 NSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +    Q + + I+ S  +LL L+NDIL+++ + +G MK    +  + +L++++  +    
Sbjct: 226 DEADKQLFAKTINQSCDLLLVLINDILEVSRLQSGQMKFEKESCSVKELVDDLYLA-HQL 284

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
           +   +++    ++G L  +  D++RL Q+ +  L+NA  F++ G   +  K  R   +  
Sbjct: 285 LVPTHLQFSKEAEGDLFIY-TDKKRLSQVITNFLTNACKFTNSGYIKLGFKHLRGTDEVA 343

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             VK++G  + E+  + VF+RF       Q  G GLGLSI +  +   GG + +SS
Sbjct: 344 IFVKDSGIGLSEEQQEKVFSRFFKQDEFSQ--GAGLGLSICQGIVQNLGGRIELSS 397


>gi|89902167|ref|YP_524638.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89346904|gb|ABD71107.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 1202

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 114/232 (49%), Gaps = 9/232 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R   +   A  +A++ K+ ++  +S+ELR+PL +I+G+  L+      S+   + Q V
Sbjct: 718 ARRVAEQARHAADQANQAKSRYISAISHELRTPLNSILGYAQLMGEDP--SIPVHRQQAV 775

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I      LL+L+   LD+A +++G + LN   +    L+ ++      +     +  +
Sbjct: 776 SVIKRGGEHLLSLIEGTLDIAHIESGKLTLNPRPMHFASLMQDIASLFELEAQAKGLSFR 835

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728
            +    L + V AD +R+ QI   +L NA+ F+ KG  T  ++ AR+    +  +++ G 
Sbjct: 836 YVEGAALPAVVRADEKRVRQILINLLGNAIKFTQKGQVTFDIRYAREMA--VIDIEDTGP 893

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +       +F  F + AH       G GLGL+I +   +L GG ++++S+ 
Sbjct: 894 GLSPQELNRIFEPF-TRAHTPGATASGSGLGLTIAKMLTDLMGGELTVTSTP 944


>gi|329733745|gb|EGG70071.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU045]
          Length = 239

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 124/222 (55%), Gaps = 13/222 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K + ++  FV +VS+EL++P+T+I GF + L     G+ N +QS   ++  I   S  
Sbjct: 11  LQKLENLRREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNR 67

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           + +LV D+LDL+ ++    +++NY    L++L   +  ++ T+ +  N RIK+ S+ +  
Sbjct: 68  IESLVTDLLDLSHIEQQKELEINYMN--LSELAINIIDNLQTQAY--NKRIKIQSEIEKD 123

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             + A   ++ Q+ + +LSNA+++SS+ + VI++  R++      +++ G  I E   K 
Sbjct: 124 VIIEAHENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKR 183

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F RF  V  A      G GLGLSI +  +  H G + + S+
Sbjct: 184 IFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSA 225


>gi|327183274|gb|AEA31721.1| histidine kinase [Lactobacillus amylovorus GRL 1118]
          Length = 483

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL   NE ++  ++ ++ F+   ++E+R+PLT I G  + L+   +   +  +S  +  
Sbjct: 238 QALKRSNEEVKAQEKRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKS--IAL 295

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L+ LVN+ LD   +    + L  +      +L ++K  ++    + N  ++VI
Sbjct: 296 MQRETKRLIRLVNENLDYEKIRNNQINLIKTNFNATPILQDLKSQLSQNAEKANDELEVI 355

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L  + ADR R  Q+   ++ NA+ F+  G  + +K  R     + SVK+NG  + +
Sbjct: 356 APDDLPIY-ADRDRFTQVMVNLVQNAIQFTHDGK-IEIKGERMVHATVLSVKDNGIGMSK 413

Query: 733 DMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISS 776
           D  K +F RF        R G    GLGL+IV S I  HGG V++ S
Sbjct: 414 DQIKYIFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVTVES 460


>gi|298242207|ref|ZP_06966014.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555261|gb|EFH89125.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 503

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 8/233 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++ D+ K+ F+    +E+++PLT +      LK  +       Q + +  I A +TIL
Sbjct: 258 AQKELDKRKDEFISLACHEIKTPLTALKLLVQRLKQKQ--KREEDQERSLSLIEAQTTIL 315

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LVND+LD++ +  G          L+ ++ E  + +      + +   V   G +   
Sbjct: 316 THLVNDLLDVSKIRQGYFDYADDLFDLDLMIREAIEQVQQATTTHTLCFHVPEAGPI-HI 374

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V D+ +L Q+ + +L NA+ +S +   V +         I  V++ G  IP+    ++FN
Sbjct: 375 VGDKYKLEQVVTNLLCNAIKYSPQAHDVDIFLGTSENAAIIQVQDYGVGIPKQYQHTIFN 434

Query: 741 RFVSNAHRGQRRGV----GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF   A+  QR+GV    GLGL +       +GG + I S +   TT +  +P
Sbjct: 435 RFDRGAY-SQRKGVFPGLGLGLYLAHEIATHYGGDIEIESEEGKGTTFSVHLP 486


>gi|229170167|ref|ZP_04297854.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
 gi|228613312|gb|EEK70450.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
          Length = 586

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L
Sbjct: 356 RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALL 414

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L+ +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++
Sbjct: 415 QLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKI 472

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V 
Sbjct: 473 TQVLYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVD 531

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A   Q  G GLGL+I +  I  HGG V   S +   TTI   +P
Sbjct: 532 KARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576


>gi|227511986|ref|ZP_03942035.1| sensor histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227524972|ref|ZP_03955021.1| sensor histidine kinase [Lactobacillus hilgardii ATCC 8290]
 gi|227084794|gb|EEI20106.1| sensor histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227087884|gb|EEI23196.1| sensor histidine kinase [Lactobacillus hilgardii ATCC 8290]
          Length = 391

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 137/262 (52%), Gaps = 14/262 (5%)

Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N Q+++  +N + DSV   +++ E+    R  +  K+  + +VS++LR+PLT+I+G+  L
Sbjct: 121 NTQSVVESINALVDSVI--KSMDEE----RAIESSKDELITNVSHDLRTPLTSILGYLGL 174

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +  S      +Y E     +  + +LV+++ +   V      L+ + I L+ ++ +
Sbjct: 175 IQDKQYKS-QEDLLKYTEIAYLKAKQMKSLVDNLFEYTKVKQTGTPLSINRIDLSQMMEQ 233

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--K 711
           +  S   +  ++ ++I      K     AD ++L ++F+ ++SNA+ +   G  + L  +
Sbjct: 234 LVASFELEAKKSGLQISAQGTEKPLYIEADAEKLGRVFNNLISNAIKYGKGGKHIYLTCR 293

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             + N + +  V N+G  IP+     +F RF  V  +      G GLGL+I +S I+LHG
Sbjct: 294 VGKPN-EAVIHVSNDGPEIPKKSLNQIFERFYRVEGSRNKDTGGSGLGLAIAQSIIDLHG 352

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G++ I +S+  +TT    +P K
Sbjct: 353 GYI-IVTSEHHLTTFAIHLPFK 373


>gi|168187447|ref|ZP_02622082.1| two-component sensor histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169294655|gb|EDS76788.1| two-component sensor histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 779

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 132/238 (55%), Gaps = 8/238 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSL 602
           ++T  ++AE      +EAL    +++  F  ++S+EL++PL  I+     L++ +   SL
Sbjct: 499 DLTPHLKAEENKKLLDEALS-YQQLRTKFFANISHELKTPLNLILSAIQFLQSVNGDSSL 557

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +  ++Y + I  +S  ++ ++N+ILD+  +D+G  +++     + +++ ++    ++ +
Sbjct: 558 RTNFNKYGDVIKENSYRMVRIINNILDITKIDSGYFEIHPENYNIVEVVEDICLYSSSYI 617

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
           +  N+     +D +      D   + +I   +LSNA+ F++ G  + +    D GDFI  
Sbjct: 618 NSKNLEFIFDTDTEEKIIACDPHLIERIILNLLSNAIKFTNAGGKITVNMY-DKGDFIDI 676

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           S+K+ G  IP++  K +F RFV    +  R Q  G G+GLS+V+SF++LH G + ++S
Sbjct: 677 SIKDTGIGIPKNHQKIIFERFVQIDKSLSRNQ-EGSGVGLSLVKSFVDLHNGFIKLNS 733


>gi|116750316|ref|YP_847003.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699380|gb|ABK18568.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 615

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 160/348 (45%), Gaps = 27/348 (7%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D + EGV V    GRI+ +N +F  L   +    S     R +    +    ES   D  
Sbjct: 262 DAMQEGVMVLDTRGRIRTTNRSFSGLVPGD----SAVAGRRPLEVIVNVELQES--CDRI 315

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
            A  +  +    SLQ TL    +   + +I+ + ++QT    V V   +           
Sbjct: 316 MASTSDSEGAPFSLQITLG--QERTYDVNIVGIADSQTGAGAVVVFHDI----------S 363

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTI 619
            L++ ++++  FV +VS+ELR+PLT+I G+T+ LL   ++       S +++ +  ++  
Sbjct: 364 ELKRLEKVRQDFVANVSHELRTPLTSIKGYTETLLAEDRVDP--HMLSSFLQIVLKNTNH 421

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLG 678
           ++ +V D+L LA ++A     N   +   + L    ++ A +     +R++  + +G  G
Sbjct: 422 VVKIVEDLLQLARLEAQQKPPNAVPVNAANALTAAWKACAHQAESKRVRLESTLPEG--G 479

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            +V AD  +L+Q+F  +L NA+ +S +G  V +            V++ G  IP    + 
Sbjct: 480 VWVCADFDQLVQVFRNLLENAIRYSPEGEAVTVSHEARREKVTLMVRDEGPGIPGAHQQR 539

Query: 738 VFNRFVS-NAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +F RF     HR    G  GLGL+I    +   GG + + S + G TT
Sbjct: 540 IFERFYRVEKHRSDNWGSTGLGLAICRHILRNLGGRIRVQSPNTGGTT 587


>gi|119775213|ref|YP_927953.1| sensor histidine kinase/response regulator [Shewanella amazonensis
           SB2B]
 gi|119767713|gb|ABM00284.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1141

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 193/448 (43%), Gaps = 52/448 (11%)

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNG----QTLHVIVTSNPRGGTIWMFENLTV 421
           PE +N  +W +       S E    T HL +G     +  +++ S   G  + + E L++
Sbjct: 554 PEAVNRDSWNKA-----ASPELIAHTEHLLSGVLGASSAALVLDSVIAGRDLALDEVLSL 608

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
             +  +K     ++    I+H  EG++V   D  +   N  +  L++  +N L PG  I 
Sbjct: 609 VDEASSKVILSQEMLRGAIEHAYEGISVVDKDLNLVAWNARYGELYQYPDNFLQPGMPIS 668

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ-GTL-----ELLSDSVLEYSIIPLPN 535
            +       +N + G+     I    +   + ++ GT      E     V++    P+P+
Sbjct: 669 EVI-----RFNAARGYCGVGDIEEQVERRVQHMRNGTPHTSERERSDGKVIKIQGNPMPD 723

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRK-------------------------ADEIKN 570
              ++TF ++T     ERAL E NE L                           A+  K+
Sbjct: 724 GGFVMTFTDITQYRAQERALKESNETLESRVKERTYELAMLNSQLLEAKAQEEMANASKS 783

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  V ++L  PL     FT  L  S+  +L+ +    + ++++S  I   L+ D+LD+
Sbjct: 784 RFLAAVGHDLMQPLNAARLFTASL--SQYSNLDDEARTTLSHVNSSLKIAGELLTDLLDI 841

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +D+G++++N     ++D+L+ +         +N IR  ++S     +  +D   L ++
Sbjct: 842 SKLDSGMVEVNRRDFAVSDILSGLAVEFDAMGKDNQIRFAMVSSSV--TINSDPALLRRV 899

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
               L+NA  + ++G  V+L      G+    V + G  I E     +F  F  +SN H 
Sbjct: 900 LQNFLTNAYRY-ARGGRVLLGCRHRPGELEIQVLDTGCGIDERELHEIFKEFKRLSNPHS 958

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776
               G+GLGL+I +    + G  + ++S
Sbjct: 959 KGVSGLGLGLAIADRISKVLGHDIKVAS 986


>gi|325923719|ref|ZP_08185338.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
 gi|325545805|gb|EGD17040.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
          Length = 603

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 178/411 (43%), Gaps = 42/411 (10%)

Query: 410 GGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G  IW+ +  +  ++  E +Y          +  + E + +     RI L NPAF  L+ 
Sbjct: 199 GTVIWLLQRQIRRRLAAEQEYLRANGRASSVLQTVREPIVLLDDKQRIMLHNPAFAELYG 258

Query: 469 TEENRLSPGTHIRNIAATCSR-----------YYNESDGWDLFAAIITSFDDERKSLQGT 517
            EE R +    + ++     R              + + WD        ++ E++   G 
Sbjct: 259 LEE-RGNESMSLEDVGEGVWRDAQIHQRLADVLLRDRELWD--------YEHEQRGADGV 309

Query: 518 LELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALR-KADEIKN-- 570
           L  +   ++    +PLP+       ++T  +++    +++ + E N  +  K D++    
Sbjct: 310 LRTM---LINARRMPLPDTNDEDVVLMTVSDISLQKASQQRIQELNRQMEGKVDQVSEVN 366

Query: 571 ----SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
               +F   VS++LR+PL ++ GF+D L      + + K   Y+E IS+S+  + +L++D
Sbjct: 367 RELEAFSYSVSHDLRAPLRHVAGFSDKLARHLGDAADEKSRHYMEVISSSARRMASLIDD 426

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           +L  + +    ++L    + +  L++E +  + + +   N   +V      L   VAD  
Sbjct: 427 LLVYSRLGRSALRLQ--AVDMQSLVSETRAILDSSVQSENTGHRVEWHIAPLPVLVADEN 484

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            + Q++  +L NA+ +S+K     ++       +G   FSV++NG+    +    +F  F
Sbjct: 485 MMRQLWMNLLGNAVKYSAKREVAKIEVGYRPLPDGGHQFSVRDNGAGFDMEYSAKLFGVF 544

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVTTINCRIPSKE 792
                  +  G G+GL+ V   +  HGG V +    DEG T      P+ E
Sbjct: 545 QRLHKASEYAGTGIGLASVRRVLTRHGGRVWAEGVVDEGATFHFVLPPAHE 595


>gi|325571334|ref|ZP_08146834.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
 gi|325155810|gb|EGC68006.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
          Length = 573

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 7/231 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R+ ++++  FV +VS+EL++P+T++IGFT+ L         + Q+ ++E I   +  L 
Sbjct: 345 IRQLEKMQKDFVGNVSHELKTPVTSLIGFTETLLDGAKEDPETLQT-FLEIIQKDAYRLK 403

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           NL+ DI+ L+  D+   +     I  ++LL +V Q+      +  +  +   +G     +
Sbjct: 404 NLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAVKKQLTFQF--EGPEQFIL 460

Query: 682 ADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + ++ LLQ I   ++ NA+ +S  G  + L  +  +   +F V++ G  I E+  + +F 
Sbjct: 461 STKKELLQPIVKNLVENAVTYSKPGGVITLSYSEQDDQLLFQVQDQGIGIDEEDQERIFE 520

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A      G GLGL+IV+ +  L GG + + S  +  +T    +P
Sbjct: 521 RFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGSTFTVTLP 571


>gi|121605276|ref|YP_982605.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120594245|gb|ABM37684.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1124

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 120/237 (50%), Gaps = 20/237 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA     EA+R     K +F+  +S+E+R+PL  ++G + LL  +   +L+++Q   ++ 
Sbjct: 456 RARQVAEEAVRA----KAAFLATMSHEIRTPLNGVVGMSTLLAET---ALDAEQRDILQT 508

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I  SS  LL +++DILD + +++G   L    + +++++ E     A +  E  I + V 
Sbjct: 509 IRLSSDQLLAVISDILDFSKIESGRFDLESEPVSVHNMIEEACDIAAPRAREKGIELIVD 568

Query: 672 ----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI---F 721
                + G   + + D  RL QI   +++NA+ F+  G+  +   L  A D        F
Sbjct: 569 VPGAAAGGPPPAILGDVTRLRQILINLVNNAVKFTEHGAVSVHSRLAEAPDEQGLALIEF 628

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           SV + G  IP +   ++F  F+       R+  G GLGL+I +  + L GG +S++S
Sbjct: 629 SVHDTGIGIPPERVGALFEAFMQVDASTTRKYGGTGLGLAICKRLVELMGGKISVTS 685


>gi|331002564|ref|ZP_08326080.1| hypothetical protein HMPREF0491_00942 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408292|gb|EGG87768.1| hypothetical protein HMPREF0491_00942 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 466

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   ++ L   +  +  F+ ++S++ RSPLT+I G+ + +    + S    Q +Y++ + 
Sbjct: 229 LNYMSDKLDDTENYQKKFISNISHDFRSPLTSIKGYLEAILDGTIPS--EMQEKYLQRVI 286

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L   +L L ++++  +KLN ++  +N ++ +   S   + +  NI I++I  
Sbjct: 287 DETNRLTKLTESLLSLDSIES--VKLNKTSFDINKVIRDTASSFEVQCNSKNITIELILI 344

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                 +AD  ++ Q+   ++ NA+ FSS+ S++I++ +        SVK+ G  I ++ 
Sbjct: 345 NVSQYVIADLSKIQQVLYNLIDNAIKFSSQNSSIIIQTSLKKEKIFISVKDTGIGIAKNE 404

Query: 735 CKSVFNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSS 777
              VF+RF  S+  RG+ ++G GLGL+IV+  +  HG ++ + S+
Sbjct: 405 QSKVFDRFYKSDLSRGKDKKGTGLGLAIVKEILQTHGENIDVIST 449


>gi|302384892|ref|YP_003820714.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302195520|gb|ADL03091.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 378

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVE 611
           R L +K    R+A+  KN  + +++++LR+PLT+IIG+ +LL   +KL      Q +Y+ 
Sbjct: 131 RGLMDKE---REAERTKNELITNIAHDLRTPLTSIIGYLELLSGETKLDP--EVQKKYIG 185

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                +  L  L+ D+     ++ G + ++ S + +  L++++ +       + N+  ++
Sbjct: 186 IAYVKTKRLEKLIEDLFGFTKLNYGKISMHVSKVDVVKLISQLLEEFYPSFVDKNLSYEL 245

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            S+  + +  AD   L ++F  +++NA+ + + G  +++K           V N G  IP
Sbjct: 246 QSNVPVQTISADGNLLARLFDNLINNAIKYGADGKRILVKVHGSEELVTVQVINYGYVIP 305

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           E+    +FN+F  V ++      G GLGL+I ++ +++HGG + +SS   G
Sbjct: 306 EEELPLIFNKFYRVEHSRSTNTGGTGLGLAIAKNIVDMHGGTIEVSSDLSG 356


>gi|254724123|ref|ZP_05185908.1| sensory box histidine kinase YycG [Bacillus anthracis str. A1055]
          Length = 613

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVIQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|254424565|ref|ZP_05038283.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192054|gb|EDX87018.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 615

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 165/354 (46%), Gaps = 22/354 (6%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY-----YNESDGW 497
           LS+G+ V      I   NP   +++ T+  +L+ G H   I    + Y       ES   
Sbjct: 270 LSDGIVVVDDQLHIVAINPVAATIFGTKP-KLAQGRHCLEIIEDRTLYDQLQSVAESQTP 328

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            L A   +S   + +S + T+E    S+  Y  I  P        V   D+ R    L  
Sbjct: 329 ALPAGP-SSQGSDAQSFELTIE--RGSIEHYQYIATP--------VTTEDNRRLGVVLLL 377

Query: 558 KNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +N   L++ D++K+ FV   S+ELR+PLT +    DLL  +    L++ + + ++     
Sbjct: 378 QNVTNLKQLDQLKSEFVMTASHELRTPLTGMAMSIDLLTETAKTKLSNNEQELLQTAQED 437

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L +LVND+LDL+ +++G ++++ +T+    L+ +  + +  +  +  I +   +   
Sbjct: 438 VERLRDLVNDLLDLSKIESGKLEVDKTTVDPRQLVEKAIELLKIQSEDKQIEVSSQTASN 497

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735
           L     D  ++  + + +++NA+ ++ +   VI   A+ +G +I  +V ++G  I     
Sbjct: 498 LPKVEVDVNKITWVMTNLIANALRYAKETIEVI---AKRHGTWISIAVADDGPGIDPAYQ 554

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F++FV         G GLGL+I +  I  HGG + + S+    +T    +P
Sbjct: 555 TKIFDKFVQVKTEKDVGGSGLGLAICKEIIKAHGGTIWVDSTPGHGSTFTFTLP 608


>gi|153826223|ref|ZP_01978890.1| sensor histidine kinase [Vibrio cholerae MZO-2]
 gi|149739988|gb|EDM54163.1| sensor histidine kinase [Vibrio cholerae MZO-2]
          Length = 736

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 125/244 (51%), Gaps = 19/244 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 335 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 387

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +K   ++
Sbjct: 388 --TSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSS 445

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714
              E  ++ ++   I+DG+   +  D+ RL QI   +LSNA+ F+  G   I    ++  
Sbjct: 446 LCVEKGLKFQLNSEITDGRW--YYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCD 503

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L  G+V
Sbjct: 504 EENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGNV 563

Query: 773 SISS 776
            + S
Sbjct: 564 LVQS 567


>gi|167646657|ref|YP_001684320.1| osmosensitive K+ channel signal transduction histidine kinase
           [Caulobacter sp. K31]
 gi|167349087|gb|ABZ71822.1| osmosensitive K+ channel signal transduction histidine kinase
           [Caulobacter sp. K31]
          Length = 897

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 110/223 (49%), Gaps = 7/223 (3%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + E LR+AD  +++ +  +S++LR+PL+ ++G +  L     G   + +   +  I   +
Sbjct: 655 ETETLRRADRFRSALLNSISHDLRTPLSTVLGASTTLIDYGKGMTAAVRDDLLLSIREEA 714

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--G 675
             L   V ++LD+  ++ G ++L      + D+L    + ++ ++ +  +    + D  G
Sbjct: 715 ERLNRYVGNLLDMTRLEGGALRLRTDWTDVRDVLGAAAERVSRRLGDRAL----VRDFPG 770

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +L    AD   L Q    IL NA+ +S   + + + A  D  + + S+++ G  IP    
Sbjct: 771 ELSLVRADSSLLEQAVVNILENAIAYSPAATRIEMAAYEDRSNVVISIEDEGRGIPTAEL 830

Query: 736 KSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
           + VF +F        R +G GLGLSI + FI+  GG ++ +S 
Sbjct: 831 EQVFEKFRRMEEPTDRNQGAGLGLSISKGFIDAMGGRIAAASP 873


>gi|71908362|ref|YP_285949.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71847983|gb|AAZ47479.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 455

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 121/237 (51%), Gaps = 11/237 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  +   K+D  K  F+ +VS+ELR+P+  I+G ++LL +     L   Q++ +  +  +
Sbjct: 207 QARQTAEKSDLAKTQFLANVSHELRTPMNGILGLSELLSSDP---LTPDQAELLSLLRDT 263

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L+  ++ +++L+ ++AG + +  +   + DLL  +  S     +E  ++++  +D  
Sbjct: 264 ADGLMRQIDLLIELSALEAGHVVIKPAPFAVADLLEGLVSSQLRSANEKGLKLEKQADPD 323

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIP 731
           L    + D +RL +IF  ++ NA+ F+  G+  I    L+    +    FS+++ G  I 
Sbjct: 324 LPLVLIGDLERLREIFDHLVGNAIKFTEHGTISITAKLLEKQNQHARIAFSIRDTGPGIS 383

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           E+  + +   F        RR  G+G+GL I    + L GG +SI +S+ GV +  C
Sbjct: 384 EEKLQVIKGLFAPGDSSLIRRHSGIGIGLPISRKLVELMGGEISI-ASEVGVGSNFC 439


>gi|219670543|ref|YP_002460978.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
 gi|219540803|gb|ACL22542.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
          Length = 896

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 127/260 (48%), Gaps = 18/260 (6%)

Query: 532 PLPNAQTMLTFV-NVTD--SVRAERALTEK-----NEALRKADEIKNSFVQHVSYELRSP 583
           PL  ++ MLT + ++T+   +  ER  TE       E    A+  K+ F+ ++S+E+R+P
Sbjct: 355 PLNGSKVMLTLLRDITERKQIEQERKRTEAEFQQAKEKAEAANRAKSEFLANMSHEIRTP 414

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  IIG  DL   + L SL   Q + ++     +  L  ++NDILD + ++AG + +   
Sbjct: 415 INGIIGMIDL---TLLTSLEKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGKLTVEEI 471

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
              L +++ ++ ++ + +     + +       L  +   D +R+ Q+ + +LSNA+ F+
Sbjct: 472 EFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLSNALKFT 531

Query: 703 SKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
            +G   +    L+   D  D  F+V + G  I E+    +F  F  V  +   +  G GL
Sbjct: 532 ERGEVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRKYGGTGL 591

Query: 757 GLSIVESFINLHGGHVSISS 776
           GL+I    + + GG + + S
Sbjct: 592 GLAISRKLVEMMGGRIWVES 611


>gi|329939263|ref|ZP_08288599.1| two-component system sensor kinase [Streptomyces griseoaurantiacus
           M045]
 gi|329301492|gb|EGG45386.1| two-component system sensor kinase [Streptomyces griseoaurantiacus
           M045]
          Length = 554

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 118/243 (48%), Gaps = 17/243 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER + E    LR+ +     FV  VS+ELR+PL  +   TD+L     G    + ++ + 
Sbjct: 283 ERTVAE----LRRLEAQGRRFVADVSHELRTPLAAMSAVTDVLDLEGDG----ETAEALR 334

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-MHENNIRIK 670
            IS  +  L  LVND+++++  DAG+  LN   I   DL   V++++A++   E  + ++
Sbjct: 335 LISEGTNRLSGLVNDLMEISRFDAGVAALNRDEI---DLAESVRRTVASRWPREGEVELR 391

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKNNG 727
           +   G L + V D +RL  + + ++ NA+        + L+  ++       +  V +NG
Sbjct: 392 LPEAGVLRARV-DPRRLDVVTANLVGNALRHGQPPVRLTLEVRKEGTGMAWAVLRVTDNG 450

Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I ED    +F RF  ++  R +    GLGL+I    + LHGG +  ++  EG      
Sbjct: 451 PGIAEDALPHIFERFYKASTSRSRSESSGLGLAITAENVRLHGGRIRAANRPEGGAEFTV 510

Query: 787 RIP 789
            +P
Sbjct: 511 ELP 513


>gi|319898185|ref|YP_004136382.1| sensor protein [Haemophilus influenzae F3031]
 gi|317433691|emb|CBY82079.1| Sensor protein [Haemophilus influenzae F3031]
          Length = 613

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 113 VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 169

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 170 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 229

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 230 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 288

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 289 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 348

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 349 TFHLTLHAQE 358


>gi|312885917|ref|ZP_07745549.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311301724|gb|EFQ78761.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1437

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 110/217 (50%), Gaps = 11/217 (5%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            KA++ K+ F+  +S+E+R+P+  +IG   LL  +    LN++Q +Y E I      L+N+
Sbjct: 919  KANQAKSVFLATMSHEIRTPMNGVIGMASLLVET---DLNTEQREYAETIITCGDSLVNV 975

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
            +NDILD + +++G M + +    L   + EV      ++    I +    D  +    + 
Sbjct: 976  INDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVALRGIDLIYEIDYNVPRQIIG 1035

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG--DFIFSVKNNGSSIPEDMCKS 737
            D  RL Q+   +++NA+ F+ KG   +   L    D+G  D  F+V + G  IPE+   +
Sbjct: 1036 DSLRLKQVLINLINNAIKFTEKGEVFVKISLLKQDDHGGIDLAFTVTDTGIGIPEEKLSN 1095

Query: 738  VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +F  F  V ++   +  G GLGL I E  + L G  +
Sbjct: 1096 LFKPFSQVDSSTTRKYGGTGLGLVISERLVKLMGDEI 1132


>gi|262166041|ref|ZP_06033778.1| hypothetical protein VMA_002490 [Vibrio mimicus VM223]
 gi|262025757|gb|EEY44425.1| hypothetical protein VMA_002490 [Vibrio mimicus VM223]
          Length = 571

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 7/221 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV  V++E+R+PL  I+G  DLL T+    L  +Q +Y+  I  S  +L  ++ND++D  
Sbjct: 204 FVAMVNHEIRTPLVGILGSADLLGTT---YLTDEQKKYLADIQHSGEMLNFVINDLIDFN 260

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            + +G++++         L N V   ++ K    N  +  I    L  +V  D++R+ QI
Sbjct: 261 KLHSGLLRITAQPFEWLQLHNYVYNLVSIKTRNKNTTLNFIYKDTLPEYVYGDKKRIQQI 320

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
              ++ N++ F+ KG   I  +  D+      VK+ G  IPE   + +F+ F  V  +  
Sbjct: 321 LLNLIGNSLKFTLKGEINIYISWADD-KLKIDVKDTGIGIPEYAQQKIFDAFYQVDRSST 379

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G+G+GL+I  S   L  G +S+ SS+   +  +  +P
Sbjct: 380 RQFEGLGMGLAICLSLTKLMNGLLSVKSSEGEGSEFSVVLP 420


>gi|229016818|ref|ZP_04173747.1| hypothetical protein bcere0030_13860 [Bacillus cereus AH1273]
 gi|229023024|ref|ZP_04179540.1| hypothetical protein bcere0029_13690 [Bacillus cereus AH1272]
 gi|228738272|gb|EEL88752.1| hypothetical protein bcere0029_13690 [Bacillus cereus AH1272]
 gi|228744470|gb|EEL94543.1| hypothetical protein bcere0030_13860 [Bacillus cereus AH1273]
          Length = 605

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 35/293 (11%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 327 FDFSEKLPVAADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 366

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + ++        SK + Y   
Sbjct: 367 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIQDGV-----SKDTTYYTN 421

Query: 613 ISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +    T  +N L+ ++L+LA +++G  KL  ST  + +L+ +V   +   M E ++++ +
Sbjct: 422 VILEETENMNRLIVEMLELAKLESGTYKLEMSTFSIGELIQQVYTKLLFSMEEKHLQVDI 481

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            +D  L  FV A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ I
Sbjct: 482 HADSSL--FVKANRSRIEQVVVNLLSNAIRYTPDGERIHVSVVETEDTVKIEIENTGNPI 539

Query: 731 PEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           PE+  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 540 PEESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHRAEYGVYNTTNSV 592


>gi|229136290|ref|ZP_04265037.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
 gi|228647162|gb|EEL03250.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
          Length = 586

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L
Sbjct: 356 RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALL 414

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L+ +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++
Sbjct: 415 QLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKI 472

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V 
Sbjct: 473 TQVLYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVD 531

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A   Q  G GLGL+I +  I  HGG V   S +   TTI   +P
Sbjct: 532 KARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576


>gi|254412228|ref|ZP_05026003.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181194|gb|EDX76183.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 423

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 13/253 (5%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +T+ +  +S+R E       EA ++  E+K+ F+Q VS+E R+PL  I     LL  S  
Sbjct: 178 MTYRHQAESLRREL------EAEKEFSELKSRFIQTVSHEFRTPLNMIYVSAQLLARSHD 231

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL---LNEVKQ 656
           G    K +Q ++    +   +  +++D+L  +   A  ++LN + + L      L E  Q
Sbjct: 232 GLTEEKCNQLLQRTDKAVRRITKILDDVLVFSKASADKLELNPTLLDLEQFCQTLVEDYQ 291

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            IA     ++  ++  + G   S   D + L QI   +LSNA+++S   ST+ L     +
Sbjct: 292 VIAG----SSKTLQFNAPGTKHSVCLDEKLLYQILGNLLSNAINYSQPNSTITLTLTYPD 347

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F +++ G  IP +    +F+ F    +     G GLGLSIV+  I +HGG +++ S
Sbjct: 348 HTVCFQIQDQGIGIPREDIPRLFDPFHRARNVSNLPGTGLGLSIVKKAIEIHGGTINVHS 407

Query: 777 SDEGVTTINCRIP 789
                TT    +P
Sbjct: 408 EVGIGTTFTVTLP 420


>gi|119472221|ref|ZP_01614400.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Alteromonadales bacterium TW-7]
 gi|119445039|gb|EAW26334.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Alteromonadales bacterium TW-7]
          Length = 772

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  EAL  A + K  F+  +S+ELR+PL  I+G T +L  +    LN +Q  +   + +S
Sbjct: 265 EAAEALETAYKDKGKFIATLSHELRTPLNGIVGLTRMLLDT---DLNKQQRSWCNTVFSS 321

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L N+ NDI+DL  +D   + +  ++I ++D +N+V         +  +   +  +G 
Sbjct: 322 AETLGNIFNDIIDLDKIDREQLDIAANSINVSDFINDVVNFAGLITEQKGLEFDIERNGM 381

Query: 677 LGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731
           L  + + D  RL Q+   +++NA+ F+  G  V L+ +R+N       +  + + G  IP
Sbjct: 382 LDIYALLDPTRLRQVVWNLINNAVKFTQHGK-VTLECSRENRPEGPWLVIKISDTGQGIP 440

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F+ +    +       G G+GL++ ++ +    G ++++S++   +    +IP
Sbjct: 441 QEQLSRIFDMYYKAPDLQGTNAIGSGIGLAVTKALVTAMKGSITVNSTEGEGSCFTVQIP 500


>gi|66046733|ref|YP_236574.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63257440|gb|AAY38536.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 745

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQ-SQY 609
           R +  + +A+R  DE+    V  VS++LR+P+T I     +++   S  G   S++ S  
Sbjct: 509 RQVRREQQAVRARDEL----VAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRRISTA 564

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +++ +  L+ D+LD + ++AG   +    + ++ +  E    +A    + +I I
Sbjct: 565 IDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEI 624

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              ++  L    AD +RL Q+ S ++ NA+ F+ K  T+ + A  +  + +F+V+++G  
Sbjct: 625 SFNAEPDL-KVQADPERLFQVLSNLIGNAIKFTPKMGTIGVAAMSNGTEIVFTVRDSGEG 683

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           IP +    +F R+ +    G   G GLGL I +  I  HGG ++  S
Sbjct: 684 IPPEQLPHIFERYWT-VKEGNPTGTGLGLYISQGIIKAHGGELAAQS 729


>gi|319936949|ref|ZP_08011359.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319807885|gb|EFW04464.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 908

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 17/237 (7%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K  F+  +S+++R+P+  I+G   + +     +   K S  +  I  SS  LL+L+
Sbjct: 395 ANSAKTDFLSSMSHDIRTPMNAIVGMASIAQAHI--NFPEKVSDCLHKIKISSRHLLSLI 452

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHENNIRIKVISDGKLGSF 680
           N++LD++ +++G + L    + L +L+++V    +  I  K  + +I I  I   K+   
Sbjct: 453 NEVLDMSKIESGKIDLMLEDVNLPELIDDVSDMCRALIDEKQQDFSIVIGRIKHEKV--- 509

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDM 734
           VAD  RL QIF  ++SNA+ ++ +G  + L          D G F F   +NG  + ED 
Sbjct: 510 VADGDRLKQIFMNLISNAVKYTPRGGQISLVINELDSLILDKGRFEFKFYDNGIGMSEDF 569

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F    +    + +G GLG++I E+ +N+  G + + S     T     IP
Sbjct: 570 LPHIFEPFSRAEDTRINKIQGTGLGMAITENIVNMMNGTIEVESQLGKGTIFTVSIP 626


>gi|169335012|ref|ZP_02862205.1| hypothetical protein ANASTE_01418 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257750|gb|EDS71716.1| hypothetical protein ANASTE_01418 [Anaerofustis stercorihominis DSM
           17244]
          Length = 672

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  E   K++++K+  V +VS++L++PLT+II + DL+K   +    +K+  Y+E + 
Sbjct: 441 IKEAVEEQVKSEKMKSELVTNVSHDLKTPLTSIINYVDLMKREDIKPEIAKE--YLEILD 498

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + S  L  LV DI D++   +G ++L+ + I L  L+N+     +  ++EN++ ++V  D
Sbjct: 499 SKSQKLKKLVEDIFDISKATSGNIELHNTNINLKSLINQSISEFSDSINENDLEVRVNVD 558

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFSVKNNGSSIPED 733
             +  + AD +RL ++   ++ N++ +S KG+ + +   +D     I ++ N       D
Sbjct: 559 DDVYVY-ADGERLGRVLENLIQNSVKYSLKGTRIYIDLEKDGPSITIINISNYEMDFTSD 617

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +  RF          G GLGLSIV+SF  L G   S++
Sbjct: 618 ---EILTRFARADKARDLEGFGLGLSIVQSFTGLMGIDFSVT 656


>gi|163813914|ref|ZP_02205308.1| hypothetical protein COPEUT_00067 [Coprococcus eutactus ATCC 27759]
 gi|158450784|gb|EDP27779.1| hypothetical protein COPEUT_00067 [Coprococcus eutactus ATCC 27759]
          Length = 663

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 121/224 (54%), Gaps = 11/224 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISA 615
           E+   L K+++++   ++ +S++LR+PL ++ G  D LL         +KQ  Y + I  
Sbjct: 424 ERAADLAKSEQLRADLLRSISHDLRTPLCSVSGNADTLLHNGNCLDEATKQQIYKD-IYD 482

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRIKVIS 673
            S  L+ +V ++L +  ++ G +KL  +  ++++++NE    +  K   H+  +R   + 
Sbjct: 483 DSEWLIGVVENLLYVTRLNDGRLKLELTDQLVDEVVNEAVSHLKKKSVGHKVTVRCDDLI 542

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             ++     D Q ++Q+   ++ NA+ ++ +GS + + A +  GD +  V +NG+ I +D
Sbjct: 543 LARM-----DAQLIVQVIVNLIDNALKYTEQGSEICVSAEKQGGDAVIRVTDNGNGIADD 597

Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           M   +F  F +  N     RR  G+GL++ +S I LHGG ++++
Sbjct: 598 MKPHIFEMFYTGKNTVADSRRSFGIGLTLCKSIIELHGGTLTLT 641


>gi|254248176|ref|ZP_04941496.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124874677|gb|EAY64667.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 1140

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 4/214 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ +V  +S+ELR+PL +I+G+  LL  +K   L   +   V  I  S   LL LV
Sbjct: 683 ANQAKSRYVSGLSHELRTPLNSILGYAQLLLQAK-EELTPMRYNAVRTIHRSGEHLLALV 741

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           + +LD+A ++AG ++LN + + L D +  +   +  +  E  +   V + G+L + V   
Sbjct: 742 DGLLDIARIEAGKLQLNVAKVSLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRTD 801

Query: 685 QRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           Q+ + QI + ++ NA+ F+S G T+ L+ +       F V + G  IP    + +F  F 
Sbjct: 802 QKCMSQILTNLIGNAIRFTSSG-TITLRVSHVLDTLKFEVIDTGPGIPPAELERLFLPFE 860

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              A      G GLGL+I        GG + + S
Sbjct: 861 RGEAAHAYDHGAGLGLTICRLLTQALGGSLEVDS 894


>gi|134299696|ref|YP_001113192.1| histidine kinase [Desulfotomaculum reducens MI-1]
 gi|134052396|gb|ABO50367.1| histidine kinase [Desulfotomaculum reducens MI-1]
          Length = 324

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 13/247 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L + NE LR+ +E +   V  +S+EL +P+T+I G+   +    L ++     QY+ 
Sbjct: 74  ESHLNKVNENLRQLEESRRQLVSDISHELGTPMTSIQGYLKAM----LDNVIEPDRQYLN 129

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   + ++  LV D+ +L+ ++A  +  N+  + + DL+  + +  A     + I   +
Sbjct: 130 LIYDKTLLVNQLVEDLFELSKLEANQVSFNFKEVTIQDLMANITRKFALDFKNSGINFMI 189

Query: 672 ISDGKLGS-----FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFS 722
                L          D  R+ Q+   +++NA+ ++  G T+ ++     A  +G+ I  
Sbjct: 190 DPIENLTPDNHIIMNVDPARIDQVMVNLINNAVKYTPTGGTIRIQCQIQNAEKDGEVIIK 249

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++GS I E     VF+RF       +  G GLGL+I +  I  HGG++ + S     +
Sbjct: 250 VIDSGSGIDEKSLPFVFDRFFKGTQSQKVGGTGLGLAIAKQIIIKHGGYIGVDSMVNKGS 309

Query: 783 TINCRIP 789
           T    +P
Sbjct: 310 TFYFSLP 316


>gi|117924203|ref|YP_864820.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607959|gb|ABK43414.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 894

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 127/265 (47%), Gaps = 13/265 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLL 594
           ++ F+++ + + A  AL ++ E  R A E    +K+ F+ H+++E R+PL  I G   L+
Sbjct: 485 VINFMSIKEDISARIALEKEIEHARTAAETANQVKSEFLTHMTHEFRTPLNIIKGCVKLI 544

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     +L+ KQ + +E I   +T L  ++ D++DL+ V++    L+     L+ LL E+
Sbjct: 545 RDEN--NLSDKQGRQLENILDGATHLATMIQDLVDLSRVESEQFHLHEEPCDLSHLLTEL 602

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709
              +  K  E  +   V +S       + D  RL    + +L+NA+ F+ +G   +    
Sbjct: 603 HDEMELKSQEKQLTFAVEVSPTLPPEIMLDAARLRHALTNLLTNAIKFTHEGQVSLNCWY 662

Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG-VGLGLSIVESFINL 767
             +     G   F + + G  IP +   ++F  F         RG VGLGL+I +  + +
Sbjct: 663 EGETKARTGTLHFVISDTGVGIPSEQIHAIFEPFNQGDMPAMTRGGVGLGLTITKRLVEV 722

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
             G + + S  +  +  + ++P ++
Sbjct: 723 MDGTIEVRSEPDHGSVFHIQLPCRK 747


>gi|325916548|ref|ZP_08178814.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537221|gb|EGD08951.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 482

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 12/243 (4%)

Query: 555 LTEKNEALRKADEIK---NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           L +  E +R+  E K     +VQ +++E++SPL  I G ++LL T  L    + +  +V 
Sbjct: 242 LGQALETMRRKLEGKAYVEHYVQSLTHEMKSPLAAIRGASELL-TEPL--PEADRQHFVA 298

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I A    L   ++ +L LA V+          I +  +L+   +++  +     +++++
Sbjct: 299 SIRAQEQRLTETIDKLLALAEVEQHGWLQTRERIAVVSVLHAALEAVMPRAAAVGVQLEL 358

Query: 672 IS--DGKLGSFVADRQRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +  D     +V+    LL Q    +L NA+ FS +GS+V+L+A  D G +  SV++ GS
Sbjct: 359 AAPPDSTGEQYVSGDGFLLRQALINLLENAIAFSPQGSSVLLRAQMDAGQWQLSVEDRGS 418

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +P+   + VF RF S A    GQR   GLGL  V     LHGG  ++ + D G      
Sbjct: 419 GVPDYAIERVFERFYSLARPQTGQRSS-GLGLPFVREVARLHGGDAALGNRDGGGAIAVL 477

Query: 787 RIP 789
           R+P
Sbjct: 478 RLP 480


>gi|311896419|dbj|BAJ28827.1| putative two-component system sensor kinase [Kitasatospora setae
           KM-6054]
          Length = 503

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 122/239 (51%), Gaps = 14/239 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   +L+++   L   +     FV  +S+ELR+PLT +   TD+L+  +  +L+      
Sbjct: 256 RTAESLSDQVAELSAREAQSRRFVADMSHELRTPLTAMTAVTDILE-DEADALDPMIEPA 314

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  + + +  L +LV +++++   DAG  KL    + + DL   +   I  +   + + +
Sbjct: 315 VRIVVSETRRLSDLVENLMEVTRFDAGTAKLVADEVDMADL---IMSCIDGRAWYDAVDL 371

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
               D   G   V D +RL  +F+ ++ NA+     GS V ++  +D+     + SV + 
Sbjct: 372 ----DAPRGILAVVDPRRLDVVFANLIGNALKHG--GSPVRVRVRQDDEAHTVVVSVSDG 425

Query: 727 GSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPED+   VF+RF  ++  R +  G GLGLSI E+   +HGG ++ +++ +GV  +
Sbjct: 426 GPGIPEDVLPHVFDRFYKADKGRARSEGSGLGLSIAEANARIHGGDITAANNPDGVGAV 484


>gi|291535232|emb|CBL08344.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Roseburia intestinalis
           M50/1]
          Length = 430

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 4/225 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV   S+EL+SPL  +I  TD+L  +   SLN +  Q V+ I      L  LV D+L
Sbjct: 208 QKDFVATASHELKSPLAVMISNTDMLLDNV--SLNEQARQAVQTIDFECMRLSRLVKDML 265

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
            LA+ DA    L+ STI ++ LL  + ++      + N+ +K+ +S+    + + D+ RL
Sbjct: 266 LLASSDAKTWTLHKSTINVDTLLITLYETYEPVCMKQNLELKLHLSEESYPAMLTDKDRL 325

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NA 746
            QI    + NA+  S   S + ++      +  FSV ++G  I ++  + +F+RF S + 
Sbjct: 326 FQILCVFMDNAIQHSKNNSLIEIEVIATEKNIAFSVADHGQGISDEDKQYIFDRFYSGDK 385

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +   GLGLSI +    +  G ++I+ +  G  T   + P K
Sbjct: 386 SHTNKSNFGLGLSIAKELTQMLNGTITINDTAGGGATFTVKFPLK 430


>gi|238026793|ref|YP_002911024.1| phosphate regulon sensor protein PhoR [Burkholderia glumae BGR1]
 gi|237875987|gb|ACR28320.1| Phosphate regulon sensor protein PhoR [Burkholderia glumae BGR1]
          Length = 436

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT+    + + D ++  FV +VS+EL++PLT + GF + L+   L   + ++++Y++ + 
Sbjct: 193 LTQDITEVERTDAMRRDFVANVSHELKTPLTVLSGFLETLRELPLS--DDERARYLDMME 250

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKV 671
             ++ +  +V D+L LA ++          + ++D+L    +V Q+++   HE +  I  
Sbjct: 251 QQASRMRKIVTDLLVLAKLEGEGKPPTDKPVDMDDVLGHLEDVAQTLSAGHHEISFEI-- 308

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  L    A+ + +      +++NA+ ++ +G  + +   RD    +FSVK++G  IP
Sbjct: 309 --DETLTVTGAETE-IFSALGNLVTNAVRYTPEGGKIRVSWRRDGAQAVFSVKDSGFGIP 365

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +  RF  V  +      G GLGL+IV+  +  H G + I S +   +T   R P
Sbjct: 366 AEDLPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDGQLLIQSEEGRGSTFTARFP 425

Query: 790 SK 791
           ++
Sbjct: 426 AQ 427


>gi|170769985|ref|ZP_02904438.1| TMAO reductase system sensor TorS [Escherichia albertii TW07627]
 gi|170121169|gb|EDS90100.1| TMAO reductase system sensor TorS [Escherichia albertii TW07627]
          Length = 904

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 114/216 (52%), Gaps = 9/216 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 429 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--TLNA-QRDDLRAITDSGESLLTI 485

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q +  ++    IR+   I+D      
Sbjct: 486 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMNGRVKGRPIRLTTEIADDVPPVL 545

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  + L++  D   ++  V+++G  I       +F 
Sbjct: 546 MGDPRRIRQVMTNLLSNALRFTDRGR-ITLRSHTDGKQWLVEVEDSGCGIDPAKLTDIFQ 604

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            FV  +  G+R G GLGL+I  S     GG ++ +S
Sbjct: 605 PFVQVS--GKRGGTGLGLTISSSLTQAMGGKLTATS 638


>gi|153003674|ref|YP_001377999.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152027247|gb|ABS25015.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 663

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 4/225 (1%)

Query: 569 KNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +   +  VS++LR+PL++II     L +++    L     +    I  +   + +LV D+
Sbjct: 441 REQTLAEVSHDLRNPLSSIILAAAQLERSAGRSELPDLVGRRAASIRRAGDRMNHLVQDL 500

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDLA  + G ++L+       +L+++  +SIA  + E  +R++   +  L     DR+R+
Sbjct: 501 LDLARAENGRLELDVGEHSARELVDDAVESIAPVVRERELRVRAAVEPLL--VRCDRERV 558

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            ++ + +LSNA+  S +  TV L A +     +F+V + G  I  D  + +F  +     
Sbjct: 559 HRVLANLLSNAVKVSPRKGTVELTARQRERAVLFTVADEGPGISLDEQRHMFEHYWRGRE 618

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            G  +GVG+GLSIV++ +  HGG V + S        +  +P  E
Sbjct: 619 SGA-QGVGIGLSIVKTLVERHGGKVWVDSVPGAGARFSFTLPRAE 662


>gi|150007292|ref|YP_001302035.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935716|gb|ABR42413.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 828

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 20/231 (8%)

Query: 562 LRKADEIKNSFVQH-------VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L KA ++  S ++        +S+++R+PL++IIG+ +LL        + +Q  Y+E + 
Sbjct: 323 LEKAKQVAESLLRSREKLMLTISHDIRAPLSSIIGYIELLLRRHP---DERQQYYLENMK 379

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR----IK 670
            SS  +L+LVND+LD   +++G M+++     +  L +E+  S         +R    +K
Sbjct: 380 GSSDHILSLVNDLLDFQRLESGEMEVHSVPFRVPALFDEIYTSFQPIAEAKGLRFVLNLK 439

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNN 726
               G++  ++ D  R+ Q+   +LSNA+ F+  G  V+L    K +  +     +V ++
Sbjct: 440 PEETGQV--YMGDPIRIRQVVGNLLSNAIKFTEAGRVVLLVSLQKLSAVHYQLSITVSDS 497

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           G  IP++  + VF  F   A   +  G GLGLSI    ++L  G +++ S+
Sbjct: 498 GPGIPKEEQERVFGEFTRLADTEEAEGFGLGLSITRKLLSLMNGTLALDST 548


>gi|329926653|ref|ZP_08281064.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328939062|gb|EGG35427.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 1017

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 11/272 (4%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           + ++L++ ++     Q +L  +    S RA   +   +E L   D++K+ F+   S+ELR
Sbjct: 356 TPALLQFGVLGFVFLQALLLSMK---SSRAFFQVERLSERLLTLDKLKDEFLAKTSHELR 412

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  D L     G L S     +  +  S   L +LVNDILD + +    + L 
Sbjct: 413 TPLHGIIGLADALIDGSSGKLPSPVIDLLRLMKVSGQRLAHLVNDILDFSKLKHQEIGLV 472

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             T+ L   +    Q +     +  +R+  ++  D  +   +AD  RL QI   ++ NA+
Sbjct: 473 LVTVNLRLAVELTLQVLNPLAEKKGLRLSHQLPDDMYV---MADENRLQQILHNLIGNAI 529

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
            ++  G+ V + A R  G     + ++G  I E     +F  F  ++   R Q+ G G+G
Sbjct: 530 AYTETGA-VTVTAKRLQGQLSIQITDSGIGIAEADLDRIFESFEQINPLDRSQQGGTGIG 588

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI +  + LH G + ++S     +T +  +P
Sbjct: 589 LSITKKLVELHDGRIGVTSGLGEGSTFSFTLP 620


>gi|317476029|ref|ZP_07935281.1| His Kinase A domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907667|gb|EFV29369.1| His Kinase A domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 702

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 171/363 (47%), Gaps = 50/363 (13%)

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           VTS+    ++W F +++T ++  E +     +V  +TI++L  G+ V       K     
Sbjct: 358 VTSDEGEYSLWAFGKDITQRIKDEQQIKRFSQVMDKTIENLPAGIVV-------KDIKNK 410

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           F+ L++  E      ++ RNI         E+ G D F      FD  +K  +  +E+  
Sbjct: 411 FKYLYRNRE------SYNRNIPM------KEALGKDDFD--FYPFDIAQKKRKQDMEIAE 456

Query: 523 DSVLEYSI-------------------IPLPNAQTMLTFV--NVTDSVRAERALTEKNEA 561
             + ++ I                   I   +   +L  +  ++T+  R ++ L    E 
Sbjct: 457 TGIEKHWITEEYDQNGKSIILDKRKMRIESKDFSPILLSIEWDITEMERMKQELLVAKEK 516

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              +D++K++F+ ++S+E+R+PL  I+GF+ ++  S   +   ++  + + + A++  LL
Sbjct: 517 AEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAES---TDAEERKSFYDIVEANNERLL 573

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+N ILDL+ ++AGI++   + + L+ L  E+  ++  +  +    I   SD ++ +  
Sbjct: 574 QLINGILDLSKIEAGIVEFTITPVRLHSLCREIYDALKFRCPQGVKLIYEPSDEEI-TIE 632

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
            D+ R+ Q+ S ++ NA  F+++G   +    R  GD I F V + G  I       VF 
Sbjct: 633 GDKNRIFQVISNLIGNAFKFTTQGK--VSYGYRRKGDGIEFHVSDTGIGIEAGKLDKVFE 690

Query: 741 RFV 743
           RFV
Sbjct: 691 RFV 693


>gi|312883424|ref|ZP_07743150.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369040|gb|EFP96566.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 963

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 114/219 (52%), Gaps = 9/219 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K++F+  +S+E+R+P+  ++G   LLK      L+SKQ  YV+ I+ S T LL +
Sbjct: 465 QANRAKSAFLATMSHEIRTPMNGVLGTAQLLKDD---GLDSKQRHYVDVINRSGTTLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG + +      ++ ++ +  + +  +  E N+++    +  +  +   
Sbjct: 522 LNDVLDYSKIEAGFIDIRPINFDIHSMIKDTCELVGARAQEKNLKLDYFIESDVEQYWHG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFN 740
           D  RL Q+ + ++ NA+ F+  G   +  A   +  G  +F V + G  I E    ++F 
Sbjct: 582 DATRLAQVLNNLVGNAVKFTDAGHVDLYVALNPDYEGYILFEVTDTGCGIDEVEQSTLFE 641

Query: 741 RFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSS 777
            F + A  G   + G GLGL+I +  +   GG +   S+
Sbjct: 642 PF-TQASNGISSKGGTGLGLAISKRIVEAMGGEMFFDST 679


>gi|257440064|ref|ZP_05615819.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
 gi|257197416|gb|EEU95700.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
          Length = 540

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 111/219 (50%), Gaps = 4/219 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E ++  D  +  F+ ++++ELR+P+T I GF D +    +      Q+ Y++ +S  +  
Sbjct: 243 ENIQSNDNSRGQFMGNIAHELRTPMTTIKGFVDGILDGTIPP--DMQNHYLQLVSEETGR 300

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ ++LDL+ +++G  ++N     + + L  V  S   ++++  I ++ ++  +   
Sbjct: 301 LARLIQNMLDLSKLESGEYQVNARMFNIWETLTGVALSAEQRINDGMIDLEGLTMDEKVL 360

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD   + Q+   IL NA+ F+  G T+     +   +   S+ N+G  I  +    VF
Sbjct: 361 VYADPDLIHQVAYNILDNAIKFTPAGGTIKFHVEKLGPEVEISIWNSGQGISPEALPYVF 420

Query: 740 NRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776
            RF   +  RG   RG GLGL+I +  +NL GG + + S
Sbjct: 421 QRFYKEDRSRGLHARGAGLGLNICKVLVNLSGGQIRVES 459


>gi|237709610|ref|ZP_04540091.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|237725247|ref|ZP_04555728.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229436513|gb|EEO46590.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|229456246|gb|EEO61967.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 855

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 126/251 (50%), Gaps = 10/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D  R+     E  +A R+A+++   +   +  +++++++P+ +I+G+TDLL+     +  
Sbjct: 313 DITRSNHYRRELEKAKRRAEDLLVAREKLMLTITHDIKAPVGSILGYTDLLERI---TTE 369

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+  + +S+  LL+LV  +LD   +DA  M +N  +   + L + +  S      
Sbjct: 370 ERQRFYLNNMQSSANHLLSLVKSLLDYHRLDAHKMDINRVSFNPHQLFDTIYISFKPMAD 429

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + +    +  L   ++ D  R+ QI   +LSNA+ F+ +GS + L+AA +NG   FS
Sbjct: 430 SKQLELNYHCNESLNRVYIGDPFRIRQIAENLLSNALKFTKEGS-ITLQAALENGQLHFS 488

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + + G  I ++  + +F  F +  H  Q + G GLGL+I    + L  G + I S     
Sbjct: 489 ISDTGCGISQEEQQRIFQEF-TRLHNAQGQEGFGLGLAITRKLVLLLEGDIKIESEQGKG 547

Query: 782 TTINCRIPSKE 792
           +  +  +P  E
Sbjct: 548 SRFHVYLPLPE 558


>gi|161503513|ref|YP_001570625.1| hypothetical protein SARI_01589 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864860|gb|ABX21483.1| hypothetical protein SARI_01589 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 936

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 9/249 (3%)

Query: 547 DSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +S  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL+T+    LN 
Sbjct: 388 ESKVAERTHALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTT---PLNI 444

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ    +     +  LL L+N++LD + +++G   L+     L  LL++  Q+I      
Sbjct: 445 KQQGLADTARYCTLSLLTLINNLLDFSRIESGHFTLHMEETALLPLLDQTMQTIQGPAQS 504

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             + ++      +   F  D  RL QI   +L NA+ F+  G  + L   R     IF V
Sbjct: 505 KKLSLRTFVGQHVPLYFHTDAIRLRQILVNLLGNAVKFTETGG-IRLTVKRHAEQLIFLV 563

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            ++G  I       +F  F       Q  G G+GL+I  S   + GG + I S     T 
Sbjct: 564 SDSGKGIEIQQQPKIFTAFYQADTNSQ--GTGIGLTIASSLAKMMGGELKIDSIPGVGTC 621

Query: 784 INCRIPSKE 792
           I+  +P +E
Sbjct: 622 ISLVLPLQE 630


>gi|5566398|gb|AAD45389.1|AF166333_1 histidine protein kinase AsgD [Myxococcus xanthus]
          Length = 773

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 10/235 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E LR+  E +   V  VS++LR+PL  I     LL+  K G+L   Q + V  I  ++ 
Sbjct: 541 QEELRRRAEFEQQLVGIVSHDLRNPLAAISMSAGLLE--KKGALTEPQKRMVWRIGQATE 598

Query: 619 ILLNLVNDILDL--ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               ++ D+LD   A +  GI  L+  T  L +++++V   +        + ++V  + +
Sbjct: 599 RAARMIRDLLDFTKARLGGGI-ALHRQTTDLREVVHQVVDELLVANPGRRVEVEVQGEVR 657

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            G +  D  R+ Q+ + +L NA+ +S   + V +    +    + SV N G+ IP ++  
Sbjct: 658 -GEW--DSDRIAQVLTNLLGNALAYSPADAPVRVDTRLEGEAALLSVFNGGAPIPRELLP 714

Query: 737 SVFNRFVSNAHR-GQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F      A + GQ  R +GLGL IV+  +  HGG V + SS++  TT   R+P
Sbjct: 715 RLFEPLTRGALKEGQSTRSIGLGLYIVQDIVRGHGGGVEVVSSEQHGTTFTVRLP 769


>gi|319900099|ref|YP_004159827.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415130|gb|ADV42241.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 630

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 30/240 (12%)

Query: 550 RAERALTEKNEALRKAD-----EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           R +  L+ +  AL +A+       K+ F+ ++S+E+R+PL  + GF+ LL    L S   
Sbjct: 377 REKVVLSTRKLALSRANAENATRAKSVFLSNMSHEIRTPLNALSGFSSLLMEDGLDSETR 436

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS-------TIVLN--DLLNEVK 655
           +Q    E I  +S +LL L+ND++DL++++ G  KL +S        I  N  D +++VK
Sbjct: 437 RQCN--EVIQQNSELLLKLINDVIDLSSLEFG--KLQFSIKRHDAICICQNVVDTVSKVK 492

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714
           Q+ A      N++  +I          D  RL Q+   +L NA  F+ +GS V+ LK   
Sbjct: 493 QTQAEVSFATNLKEMIIE--------TDDSRLQQVLINLLINATKFTPEGSIVLELKQEA 544

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +N  F FSV + G  IP++   ++F RF       Q  G GLGLSI +  I   GG + I
Sbjct: 545 ENMIF-FSVTDTGCGIPQNKQATIFQRFEKLNENMQ--GSGLGLSICQLIIEHIGGKIWI 601


>gi|325108930|ref|YP_004269998.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324969198|gb|ADY59976.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1628

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 11/226 (4%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + LR  D  K+ F+  +++ELR+PL  I    DLL      +L SK+ Q V  +      
Sbjct: 1227 DQLRATDRRKDEFLAMLAHELRNPLAPIRSGLDLL------TLESKEDQPVLLVMKEQVE 1280

Query: 620  -LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677
             L+ LV+D+LD++ +  G + L   T  L +++    +++     E    + V + +  L
Sbjct: 1281 HLVRLVDDLLDVSRIMRGKIDLRKKTTELKEIIERAVEAVRWTFDEKQQTLTVSVPEESL 1340

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              FV D  RL+Q+ S +L+NA  ++  G  + LK  +   +    V +NG  I  ++  +
Sbjct: 1341 PIFV-DPVRLVQVVSNLLNNASKYTDPGGNIDLKVEKAEDEVRVRVLDNGIGIEPELLPN 1399

Query: 738  VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VF+ F  ++    R   G+G+GL++V++ + +H G VS+ S   G+
Sbjct: 1400 VFDLFTQSSRALDRAQGGLGIGLTLVQNLVEMHRGSVSVFSDGPGL 1445


>gi|301168536|emb|CBW28126.1| putative alkaline phosphatase synthesis sensor protein
           [Bacteriovorax marinus SJ]
          Length = 630

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ E+ + L+K + +K +F+  +S++L++P+  I G  D++K    G  N + +  ++ I
Sbjct: 394 AIQEETKLLKKVENLKQNFISLMSHDLKTPVAKIAGMADVMKHKNAG--NMELTSGLQSI 451

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L   ++ ILDL  V++  + LN  +  +N ++    + +  +   N   + V+ 
Sbjct: 452 IDSTKELNKFISSILDLTKVESRNVSLNMQSKDINSIVENTVEGL--RYEANTKNVTVVQ 509

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D   L     D   + ++F+ ++ NA+ +S +GS V +K   D      ++ +NG  IP 
Sbjct: 510 DLAPLYPIEFDVTLMKRVFANLVENAIKYSGEGSEVNVKTWDDEQWVYITISDNGVGIPP 569

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVT 782
           +  + VF +F  V N      +G GLGL +V+ F+ LHGG + + S   +G T
Sbjct: 570 EDLEYVFEKFYRVKNDASHSIKGTGLGLYLVKYFVELHGGTIEAFSEVGQGTT 622


>gi|295694964|ref|YP_003588202.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
 gi|295410566|gb|ADG05058.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
          Length = 752

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 176/387 (45%), Gaps = 42/387 (10%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           M ENL  ++   +   TL+      +D ++EG+     +GRI   NPA   L   E    
Sbjct: 364 MLENLVEELRKLSTRTTLI------LDSVTEGIYELDENGRITFCNPAAARLVGRE---- 413

Query: 475 SPGTHIRNIAATCSRYYNESD--GWDLFAAIITSFDDERKSLQGTLELL-----SDSVLE 527
            PG  I  +      ++ +S+  G  L A  I S     + +Q T EL      S   ++
Sbjct: 414 -PG-EIIGLPQHDVFWHGKSEDKGCTLAACPILSPIQTGQPIQATDELFRRKDGSTFPVD 471

Query: 528 YSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           Y   P+ +       ++ F +VT+  R+E  +  K+E L     +       V++E+R+P
Sbjct: 472 YVSTPMRDGGRIQGAVVVFKDVTERKRSEELMI-KSEKL----SVVGQLAAGVAHEIRNP 526

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT + GF  LL+++    +++K   +   +S    I L ++N++L LA      + + + 
Sbjct: 527 LTALKGFVQLLQSN----VHTKDEYFNIMLSELDRIEL-IINELLILAKP----VDVQFQ 577

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              L  L+  V   + T+   +N++I    D  L + + D  RL Q+   +L NA++   
Sbjct: 578 FHDLKVLIETVVALLRTQAILSNVQIATDCDPALPAVLCDENRLKQVLVNLLKNAIEAMP 637

Query: 704 KGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           +G  ++++A + D+   +  V + G  IPED    +   F +     + +GVGLGL++  
Sbjct: 638 RGGQIVVQARQEDDRTILIRVIDEGMGIPEDSLPRLGEPFFTT----KEKGVGLGLTMSY 693

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             I  HGG +   S     TT+   +P
Sbjct: 694 QIIESHGGQMHFESEVGAGTTVEILLP 720


>gi|251795530|ref|YP_003010261.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247543156|gb|ACT00175.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 591

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 166/351 (47%), Gaps = 44/351 (12%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D++  GV +  P G+I L +     L       L              R Y E+     
Sbjct: 256 LDNMINGVMMIDPAGKILLMSRRAGELLGISSGEL------------VGRNYAEAKQQYE 303

Query: 500 FAAIITSFDDERKSLQG--TLELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAE 552
            + +I    + R+ ++   T     + +LE +++P+          +L   +VT      
Sbjct: 304 LSQLIQEALEGREHIREEITFYFPEERLLELNLVPINQENQEFGGVLLVLADVT------ 357

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYV 610
                   A+R+ + +++ FV +VS+EL++P+  + GF + L     G++N +++   ++
Sbjct: 358 --------AIRRLERMRSEFVANVSHELKTPIAAVKGFAETLLG---GAVNDEETARSFL 406

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I   S  L  L+ DIL L+ +++  + L +S + ++  + +    + ++  + +I+++
Sbjct: 407 QIIYDESDRLNRLIGDILALSKIESKRVPLYFSPVEMDSFMTKTVTMMESEAAKKSIKLQ 466

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
           +  + + G +V AD  RL QI   +++N ++++ +G  V +     + D I   + + G 
Sbjct: 467 L--EMEHGLYVEADEDRLRQIMMNVIANGVNYTPEGGKVSVNIESIDEDHIRIQISDTGI 524

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            IP+     +F RF  V  A      G GLGLSIV+  + LH G ++++S+
Sbjct: 525 GIPKKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLVELHKGTIAVTSA 575


>gi|158337906|ref|YP_001519082.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308147|gb|ABW29764.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 888

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 16/236 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +       A+  K+ F+ ++S+ELR+P+  +IG T LL  +    L+ +Q+ +VE I
Sbjct: 359 ALVQAKRDADTANTAKSQFLANMSHELRTPMNAVIGMTGLLLNT---DLDLQQADFVETI 415

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S   LL+L+NDILD + ++AG ++       L   + +  + +A +  + ++ +  + 
Sbjct: 416 RSSGDALLSLINDILDFSKIEAGKLEFENQPFDLRICIEQALRIVAPRAVDKSLELAYLF 475

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARDNGDFIFS-- 722
           +     + + D  RL QI   +L+N + F+  G  V+          A    G  I    
Sbjct: 476 EPDTPEWIIGDVTRLRQIIVNLLTNGVKFTDTGEVVVYIQDVTADHAAPVRKGHHILQIV 535

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           VK+ G  IP D    +F  F        R+  G GLGL+I      L GG + + S
Sbjct: 536 VKDTGIGIPADRMDRLFKSFSQVDASTTRKYGGTGLGLAICHRLCELMGGRMWVES 591


>gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 691

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 19/265 (7%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P  Q +L   ++T+  + ER L E  E   +   +K++ + ++S+E+R+PL  +IGF ++
Sbjct: 418 PAFQVVLR--DITERKQYERHLLEAKERAEEIARLKSTLLSNISHEIRTPLAGVIGFAEV 475

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+      L+    +    I  S   LL  +N +LDLA ++AG   L        D  +E
Sbjct: 476 LEE----ELDEPHRELAALIRDSGRRLLETLNTLLDLARIEAGAFVLTPEPF---DAADE 528

Query: 654 VKQSI---ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           V+QS+      + +  +R+++ + D  L  ++ DR    +I   ++SNA+ F+ +G   +
Sbjct: 529 VRQSVRIFQRMIDDKGLRLELDLPDAPLPVYL-DRNGFHRIVVNLVSNAVKFTDEGMIRV 587

Query: 710 LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFIN 766
             AA   GD++   V++ G  I       +F  F   +N       G GLGL+I    + 
Sbjct: 588 GLAA--EGDWLRLQVQDTGVGIDPAFMPHLFEEFRQENNGLARTHPGSGLGLAITHRLVE 645

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           + GG + + S     TT    +P +
Sbjct: 646 MMGGRIEVQSEKGKGTTFTVWLPLR 670


>gi|256826676|ref|YP_003150635.1| signal transduction histidine kinase [Cryptobacterium curtum DSM
           15641]
 gi|256582819|gb|ACU93953.1| signal transduction histidine kinase [Cryptobacterium curtum DSM
           15641]
          Length = 319

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 12/251 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++ DS  A+ A       L + ++ +  FV  V++ELR+PLT I G  +LL    L  
Sbjct: 76  FKDLLDSSYAQAA------DLARQEKQQLQFVGDVAHELRTPLTAIHGNAELLADPDLPP 129

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               + ++   +   S  L  LVND+L L  ++     LN++ + L  +  E   ++A  
Sbjct: 130 --EMREKFGHTVVTESERLTRLVNDLLSLQHIEGDSYVLNFTRVDLRPVAQEAVDALAPV 187

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + E      VI  G+    + +R RL Q+ S ++ NA  F   G  + ++     G+ I 
Sbjct: 188 LQERGAHCVVI--GEAPDVLGNRDRLKQVVSNLVDNASRFIEPGGHIRVELYGVGGNSII 245

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +VK++G+   +   K +F RF        R   G GLGLSIV+S +  H G V   +  E
Sbjct: 246 AVKDDGTGFGDVDPKMLFERFFRTDFSRARNTGGSGLGLSIVKSVVEAHDGTVEAYNLPE 305

Query: 780 GVTTINCRIPS 790
           G       IPS
Sbjct: 306 GGACFIVAIPS 316


>gi|212690571|ref|ZP_03298699.1| hypothetical protein BACDOR_00057 [Bacteroides dorei DSM 17855]
 gi|265754240|ref|ZP_06089429.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|212666920|gb|EEB27492.1| hypothetical protein BACDOR_00057 [Bacteroides dorei DSM 17855]
 gi|263234949|gb|EEZ20504.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 855

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 126/251 (50%), Gaps = 10/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D  R+     E  +A R+A+++   +   +  +++++++P+ +I+G+TDLL+     +  
Sbjct: 313 DITRSNHYRRELEKAKRRAEDLLVAREKLMLTITHDIKAPVGSILGYTDLLERI---TTE 369

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+  + +S+  LL+LV  +LD   +DA  M +N  +   + L + +  S      
Sbjct: 370 ERQRFYLNNMQSSANHLLSLVKSLLDYHRLDAHKMDINRVSFNPHQLFDTIYISFKPMAD 429

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + +    +  L   ++ D  R+ QI   +LSNA+ F+ +GS + L+AA +NG   FS
Sbjct: 430 SKQLELNYHCNESLNRVYIGDPFRIRQIAENLLSNALKFTKEGS-ITLQAALENGQLHFS 488

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + + G  I ++  + +F  F +  H  Q + G GLGL+I    + L  G + I S     
Sbjct: 489 ISDTGCGISQEEQQRIFQEF-TRLHNAQGQEGFGLGLAITRKLVLLLEGDIKIESEQGKG 547

Query: 782 TTINCRIPSKE 792
           +  +  +P  E
Sbjct: 548 SRFHVYLPLPE 558


>gi|254442095|ref|ZP_05055571.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256403|gb|EDY80711.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 536

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 558 KNEALRK--ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           +NE L+   A + K+ F+  +S+E R+P+  IIG  ++LK    G  +S++ Q +    A
Sbjct: 148 ENEKLKAEAASKAKSEFLAVMSHEFRTPMNGIIGGLEILKNEPAGD-SSREIQSMMRECA 206

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +   L L+ND+LDL+ +++  ++L    + L+D++     ++  K    +I+++   D 
Sbjct: 207 FNQ--LELINDVLDLSKIESNSVELEIGPVCLSDVITSTMGTLGFKAESKSIKLESFVDP 264

Query: 676 KL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +  SF +D +R+ QI   ++ NA+ F+  G   +   +   G   F+V + G  I E  
Sbjct: 265 SVPNSFRSDARRIRQILLNLVGNAVKFTDSGEVKLKVTSSLGGMLEFTVTDTGIGIAEAD 324

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            K VF  F  V  +++ + +G GLGL+I +    + GG + + S
Sbjct: 325 IKKVFESFSQVDGSYQRRYQGTGLGLTICKRLTRILGGEIRVES 368


>gi|218438404|ref|YP_002376733.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218171132|gb|ACK69865.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 404

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 119/244 (48%), Gaps = 2/244 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R +  +NE L++   +K+ F+  +S+ELR+P+  I+GF+ +L       L   Q+  
Sbjct: 158 RQRRQIEIQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRRYPEPLTPAQTDL 217

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  +S  LL L+ND+LD + ++AG + L+     L  L+    + + +     N+ +
Sbjct: 218 VQRIFDNSKNLLTLLNDVLDFSKIEAGKLILHPHEFDLKQLVVLTTEELRSLAISKNLSL 277

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  + +    + D+  L +I   +LSNA+ F+  G   +     +      +V++ G  
Sbjct: 278 QIQVEVENPKIINDQSCLRRILVNLLSNAIKFTETGGVSVTVWELNPDLMAIAVEDTGIG 337

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  + +F  F        R+  G GLGL+I ES I +  G ++++S     +     
Sbjct: 338 IAQEHLEHIFEVFRQADQTLTRKYGGTGLGLAISESLIKMMHGKITVTSELGKGSIFQIE 397

Query: 788 IPSK 791
            P K
Sbjct: 398 FPRK 401


>gi|171060879|ref|YP_001793228.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170778324|gb|ACB36463.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 757

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 176/381 (46%), Gaps = 43/381 (11%)

Query: 431 TLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           T ++++GE +D +     +G   F    R+   +PAF  L    E++ + G   R+I A 
Sbjct: 397 TRLQIRGEQLDAIFALSPDGFVSFDSQRRVNYVSPAFTRLTGMPESQ-ALGADERDIEAQ 455

Query: 487 CSRYYNESDGWDLFAAI---ITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLT 541
                +    W  F A+   +   DD     +  +E    +  VLE   + L    T   
Sbjct: 456 LRAQCDSPIPWRGFDAMRHDLRPRDDASVPGRELIETARPARRVLE---VGLREGHT--- 509

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V + R +T +    R+ D++K+ F+   ++ELR+P+ +I GF +L+   KL +
Sbjct: 510 --EAISQVLSLRDVTHE----REVDQMKSEFLSTAAHELRTPMASIFGFAELMLRRKLSA 563

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-----IMKLNYSTIVLNDLLNEVK- 655
              KQ   +  I   S ++++++N++LDLA ++A      +++     ++L ++L++ K 
Sbjct: 564 --EKQLDVLTTIHRQSQLMISIINELLDLARIEARGGKDFVLETLDLALLLREVLHDFKP 621

Query: 656 -QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--A 712
            Q  A  + E   R++ +        + DR ++ Q    +LSNA  +S  G  V+++  A
Sbjct: 622 PQDRALPLFER--RLEPVP------VLVDRNKMRQAIGNVLSNAYKYSPHGGDVVVRIVA 673

Query: 713 ARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
             D    +    V+++G  +       V  RF      G   G GLG+SIV+  I L GG
Sbjct: 674 GTDPAVPMIGIEVRDHGIGMTAAQLARVSERFYRADTSGSIAGTGLGMSIVKEIIELLGG 733

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            ++++S     TT+   +P K
Sbjct: 734 RIALASEPAQGTTVTLWLPCK 754


>gi|152977664|ref|YP_001377181.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152026416|gb|ABS24186.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 619

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D  +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ L
Sbjct: 384 RIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWKDPNIA-PQFLTVTQEETERMIRL 442

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           VN +L L+ +D+   +L    +   +  N V         +N I  +  S  K   FV  
Sbjct: 443 VNALLQLSKMDSTEYRLMKEWVDFTEFFNNVIDRFEMSKEQNVIFNRSFS--KKARFVDM 500

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  ++ Q+   ++SNA+ +S +G T+  +  RD GD +  SV + G  IP++    +F R
Sbjct: 501 DTDKITQVLYNVISNALKYSPEGGTITYR-LRDRGDMLEISVSDQGMGIPKENVDKIFER 559

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A   Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 560 FYRVDKARSRQMGGTGLGLAIAKEMIIAHGGSIWAKSEEGKGTTIYFTLP 609


>gi|107026085|ref|YP_623596.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           cenocepacia AU 1054]
 gi|116692731|ref|YP_838264.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           cenocepacia HI2424]
 gi|105895459|gb|ABF78623.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           cenocepacia AU 1054]
 gi|116650731|gb|ABK11371.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           cenocepacia HI2424]
          Length = 1140

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 4/214 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ +V  +S+ELR+PL +I+G+  LL  +K   L   +   V  I  S   LL LV
Sbjct: 683 ANQAKSRYVSGLSHELRTPLNSILGYAQLLLQAK-EELTPMRYNAVRTIHRSGEHLLALV 741

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           + +LD+A ++AG ++LN + + L D +  +   +  +  E  +   V + G+L + V   
Sbjct: 742 DGLLDIARIEAGKLQLNVAKVSLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRTD 801

Query: 685 QRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           Q+ + QI + ++ NA+ F+S G T+ L+ +       F V + G  IP    + +F  F 
Sbjct: 802 QKCMSQILTNLIGNAIRFTSSG-TITLRVSHVLDTLKFEVIDTGPGIPPAELERLFLPFE 860

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              A      G GLGL+I        GG + + S
Sbjct: 861 RGEAAHAYDHGAGLGLTICRLLTQALGGSLEVDS 894


>gi|332705480|ref|ZP_08425558.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula
           3L]
 gi|332355840|gb|EGJ35302.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula
           3L]
          Length = 606

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 20/248 (8%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           +E   +A   K+ F+ + S+ELR+PL  +IGF  L+    +     +Q  +++    S+ 
Sbjct: 346 SERAEEASRHKSDFLANTSHELRTPLNGMIGFLKLV-LDGMADDPQEQRDFIQEAYNSAL 404

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV----ISD 674
            LLN++NDILD+A ++AG M+L  + + L+ L  +V+     +    N+ +++    + D
Sbjct: 405 HLLNIINDILDIAKIEAGKMELELAPVELDSLFRKVEDFTINQAQLKNLSLRIEMPDVYD 464

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGDFIFSVK 724
           G +     + QRLLQ+   ++ NA+ F+ +G   +           K     G     V 
Sbjct: 465 GIV--MYGNYQRLLQVMLNLVGNAIKFTDEGGVTVSAEVIRKKITFKGTEFPGLVKVRVA 522

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV- 781
           + G  +  D    +F  F  V  +   Q  G GLGL I +  I   GG V+  S  E + 
Sbjct: 523 DTGIGVSLDQQDRLFQTFTQVDGSRTRQYGGTGLGLVISQKLIETMGGVVNFFSMGENLG 582

Query: 782 TTINCRIP 789
           +T+   +P
Sbjct: 583 STVTFTVP 590


>gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
 gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
          Length = 1364

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 125/246 (50%), Gaps = 19/246 (7%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL--G 600
           V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+L   
Sbjct: 618 VDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPVA 677

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+      V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + +
Sbjct: 678 ALD-----MVAKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRS 732

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            +    + + V     D +    + D  R+ Q+   ++ NA+ F+ +G  V+      +G
Sbjct: 733 SLSAKPVEMIVEPLPRDSRW--LLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSG 790

Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           D      +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG
Sbjct: 791 DPNKLKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGG 850

Query: 771 HVSISS 776
            + + S
Sbjct: 851 ELEVES 856


>gi|319775909|ref|YP_004138397.1| Sensor protein [Haemophilus influenzae F3047]
 gi|317450500|emb|CBY86717.1| Sensor protein [Haemophilus influenzae F3047]
          Length = 613

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 113 VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 169

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 170 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 229

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 230 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 288

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 289 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 348

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 349 TFHLTLHAQE 358


>gi|239787450|emb|CAX83922.1| Sensor protein [uncultured bacterium]
          Length = 1574

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 11/234 (4%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E  L    E  R+A+  K  F+ ++S+E+R+P+  I+G   L   +    L S+Q  Y+E
Sbjct: 815  EDELRASEEQARQANRAKGEFLANMSHEIRTPMNAIVGMAYLAMQT---GLTSQQRGYLE 871

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIK 670
             I  +S  LL L+NDILD + +DAG +++      L+ +L  V   +  K+  +  + + 
Sbjct: 872  KIQGASHALLRLINDILDFSRIDAGKLEMENLPFELDQVLGGVFDGLLPKLARKGGVELL 931

Query: 671  VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKN 725
            +   G L   +  D  RL Q+ + +  NA+ F+  G   +   L+A  +    + F V +
Sbjct: 932  LDCPGDLPRRLRGDGVRLGQVLTNLCDNAIKFTEAGEVAVSIRLEAMDEEQLTYAFVVTD 991

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            +G  I  +  + +   F        RR  G GLGL+I  + + + GG   + S+
Sbjct: 992  SGIGIDPEQIERILQPFQQADSSTTRRYGGTGLGLAICRNLVTMMGGVFQVDSA 1045


>gi|167767207|ref|ZP_02439260.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1]
 gi|167711182|gb|EDS21761.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1]
          Length = 1068

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 135/271 (49%), Gaps = 27/271 (9%)

Query: 537 QTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +L  ++VT   +AE    +AL E   +   A+  K  F+ ++S+++R+P+  I+G T 
Sbjct: 523 KVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTA 582

Query: 593 LLKTSKLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +      G+    Q + +E    I+ SS  LL L+N++LD+A +++G M L      L+D
Sbjct: 583 IA-----GANIESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSD 637

Query: 650 LLNEV----KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++ +    K  +    H  +I I  I      +   D  R+ Q+F  ++SNA+ ++  G
Sbjct: 638 LVDNLITITKPVLDEHKHNFDIHINHIEH---EAVCGDSLRIQQVFVNLMSNAIKYTPDG 694

Query: 706 STVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLG 757
             +            + G + F++++NG  +  +  K +F+ F  ++ HR  R +G GLG
Sbjct: 695 GNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTGLG 754

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++I  + +NL  G + + S+    T I   I
Sbjct: 755 MAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785


>gi|115379211|ref|ZP_01466329.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1]
 gi|310820022|ref|YP_003952380.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115363798|gb|EAU62915.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1]
 gi|309393094|gb|ADO70553.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 665

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 10/232 (4%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           AL++  E +   +  VS++LRSPL  I +G T + +      L+ +  + V  I  ++  
Sbjct: 438 ALKRQAEFEQHLIGIVSHDLRSPLGAIHLGATAMARRE---DLDERSRKSVMRIQNAAER 494

Query: 620 LLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            + +V D+LD       G +++      L++L   V   +        +R++   DG+ G
Sbjct: 495 AIRMVKDLLDFTQARLGGGIRIERRPTNLHELARGVVDEVEAAYPARELRVRRSGDGR-G 553

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S+  D  RL Q+   +++NA+ +S   + + ++    +G+   SV N G+ IP ++  S+
Sbjct: 554 SW--DPDRLSQVVQNLVTNALKYSPDDTPIQVETFGVDGEVTLSVHNQGAPIPPELLASL 611

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F              R VGLGL IV+S +  HGG V + S+ E  TT   R+
Sbjct: 612 FQPLTRGTAEIDTAGRSVGLGLYIVQSIVEAHGGRVEVQSTAEVGTTFTVRL 663


>gi|159900990|ref|YP_001547237.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894029|gb|ABX07109.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 581

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 123/241 (51%), Gaps = 8/241 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT K++A   A+  K++F+  VS+ELR+PL  I+G+++++    +     + +  +  I 
Sbjct: 325 LTAKDDA-EAANRAKSTFLSTVSHELRTPLNAIVGYSEMIYEDLIDRSMPELAMDMTRIR 383

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++S  LL+L++ +L +  +DA +++L Y TI L   +  +   +  K  +N   ++++  
Sbjct: 384 SASDRLLSLIDGVLTITDLDAEVVRLEYETIDLALAIGSISDQLQAKAQDNKNTVQLLGS 443

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI-FSVKNNGSSIP 731
              GS ++D  +L  I   +L NA+ F+  G  S  + +     G ++  ++++ G  I 
Sbjct: 444 QNWGSIISDDHKLRMIIYHLLDNAIKFTHAGLISISVQRLQHAAGGWLEIAIRDTGIGIA 503

Query: 732 EDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  + +F  FV   S+A R Q  G GLGL++        GG + + S     +T    +
Sbjct: 504 HEQFERIFEPFVQADSSATR-QYEGTGLGLAVSMRLARALGGTIELDSRLGIGSTFTLHM 562

Query: 789 P 789
           P
Sbjct: 563 P 563


>gi|167648680|ref|YP_001686343.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167351110|gb|ABZ73845.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 614

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 8/238 (3%)

Query: 544 NVTDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++  SVRA     E+  E  + A+  K+ F+  VS+E+R+PL  I+G   LL      +L
Sbjct: 223 DLESSVRARTIELERMTEEAKVANRAKSQFLATVSHEMRTPLNAILGEGQLLARE---AL 279

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   ++ I  +S  + +L++D+LD++ ++AG ++L      L  L+++++Q      
Sbjct: 280 TPSQRSRLQVIDTASRAMRHLIDDVLDISQIEAGALRLRPKVFALATLVDDIQQIYRPLA 339

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               + + V    +   F   D  RL QI   +++NA+ F+ +G  V +K   D+     
Sbjct: 340 EGRGLSLTVSLQPETAPFRRGDPDRLRQIVGNLIANALKFTRQGG-VTVKIGGDDEQLTV 398

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           SV + G  I     +++F RFV       R   G+GLGL+I        GG + + S+
Sbjct: 399 SVSDTGIGIDAKDHETIFQRFVQVDSSSTREAGGIGLGLAICRELSEQMGGSLKVISA 456


>gi|315645081|ref|ZP_07898207.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
 gi|315279502|gb|EFU42807.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
          Length = 409

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 10/210 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+  +  +S+E+R+P+  I+G + LL   +L SL+ +Q +YVE I  SS  LL+++  IL
Sbjct: 177 KSELLAVMSHEIRTPMNGIMGMSALL---QLTSLDEEQREYVELIEQSSESLLSMIEHIL 233

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRL 687
           + + V+   M+L      L  L+ +V       +    IR+  VI D       AD  ++
Sbjct: 234 EYSKVENTKMELVMEPFYLRPLMKQVTSLFMNDVQRKGIRLHVVIGDEVPEKVTADANKI 293

Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+   ++SNA+ F+S+G  +V +  + +      SV++ G  IP D    +F  F S A
Sbjct: 294 RQVLINLISNAIKFTSEGEVSVAVGISPETQAIKISVRDTGIGIPVDRRHRLFKSF-SQA 352

Query: 747 HRG----QRRGVGLGLSIVESFINLHGGHV 772
           H      +  G GLGLSI +    L  G +
Sbjct: 353 HHAEVTREYTGTGLGLSICKQLTELMNGRI 382


>gi|313204107|ref|YP_004042764.1| histidine kinase [Paludibacter propionicigenes WB4]
 gi|312443423|gb|ADQ79779.1| histidine kinase [Paludibacter propionicigenes WB4]
          Length = 1298

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 131/257 (50%), Gaps = 19/257 (7%)

Query: 542  FVNVTDSVRAERALTEKNEALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSK 598
            + +V+  +R  R    K E L+K   D++K SF  ++S+ELR+PLT I+   D +LK   
Sbjct: 784  YSSVSYYIRRNR---HKMETLQKEELDQLKYSFFTNISHELRTPLTLILTPLDSILKKVD 840

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              SL  +    +  I  ++  LL LVN +LD   ++     L  S   +ND + EV    
Sbjct: 841  DESLKKQ----LNGIYRNANELLKLVNQLLDFRKLEMKGETLELSYCSINDFI-EVTAFS 895

Query: 659  ATKMHENNIRIKVIS---DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
              +M  NN  I+++S   D  + ++V D+ ++ +I + +LSNA+ F+  G  ++LKA +D
Sbjct: 896  FQEMAANN-GIELVSECEDDNIYAYV-DKDKMQKIINNLLSNAIKFTPSGGRILLKAMKD 953

Query: 716  NGD--FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +  F+  V + G  IPE     +F+RF      +    G G+GL +V+ ++ LH G +
Sbjct: 954  TDEQMFVIQVSDTGIGIPEVDVSQIFDRFYQVKKQKSINTGSGIGLHLVKEYVELHNGTI 1013

Query: 773  SISSSDEGVTTINCRIP 789
             + S     +     IP
Sbjct: 1014 EVESRLNEGSLFTVSIP 1030


>gi|255533357|ref|YP_003093729.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255346341|gb|ACU05667.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 706

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 135/260 (51%), Gaps = 14/260 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++   N+    + ER L    +   +    K+ F+ ++S+E+R+PL +++GF++ L    
Sbjct: 307 VIILYNIIKLYKNERVLIGLGKRAAQDSHSKSRFLANMSHEIRTPLNSVVGFSEQLSQ-- 364

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L+ +Q   V+ I  SS +LL+LVN+ILD +  + G + L     +  D + EV  S+
Sbjct: 365 -GILSPEQKDQVDAIRNSSEMLLSLVNEILDFSKYEVGKINLENVPFLPEDEIMEVFNSM 423

Query: 659 -ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----- 712
               +++N +    +S  K      DR RL Q+   +L+NA+ F++ G  V LK      
Sbjct: 424 NVLAINKNLLLENKVSLEKGICLAGDRLRLKQLIMNLLTNAIKFTASGK-VTLKVNLAVH 482

Query: 713 ARDNGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
            + +      V++ G  I PED  + +F+ F  V ++ + +++G GLGL+I +  + L G
Sbjct: 483 GKKHALLKVQVEDTGIGIAPEDQ-EFIFDEFAQVYSSTKSRQQGTGLGLAICKKIVELQG 541

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +S++S     +  +  IP
Sbjct: 542 GKISVNSVMGKGSVFSFEIP 561


>gi|229096053|ref|ZP_04227027.1| hypothetical protein bcere0020_13020 [Bacillus cereus Rock3-29]
 gi|229115009|ref|ZP_04244420.1| hypothetical protein bcere0017_13040 [Bacillus cereus Rock1-3]
 gi|228668425|gb|EEL23856.1| hypothetical protein bcere0017_13040 [Bacillus cereus Rock1-3]
 gi|228687345|gb|EEL41249.1| hypothetical protein bcere0020_13020 [Bacillus cereus Rock3-29]
          Length = 616

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 142/292 (48%), Gaps = 33/292 (11%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 338 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 377

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + ++      ++   + Y + 
Sbjct: 378 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIQ----DGVSKDTTYYTDV 433

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL  +T  + +L+ +V   +   M E  +++ V 
Sbjct: 434 ILEETENMNRLIVEMLELAKLESGTYKLEMTTFSIGELIQQVHTKLLFSMEEKQLQVDVD 493

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +D  +  FV A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IP
Sbjct: 494 ADTSI--FVKANRSRIEQVVVNLLSNAIRYTPDGERIQVSVIETEDTVKVEIENTGNPIP 551

Query: 732 EDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           E+  + +++RF   +A R +   G GLGLSIV++ ++LH     + +++  V
Sbjct: 552 EESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAKYGVYNTNNSV 603


>gi|220909974|ref|YP_002485285.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866585|gb|ACL46924.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 701

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 7/235 (2%)

Query: 550 RAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           RAE   +L  +   L++A+ +K+ F+  +S+ELR+PL  I+ ++ +L+  K      K +
Sbjct: 311 RAELVSSLQHQTGELKRANRVKDEFLAVLSHELRTPLNPILAWSQMLQHRKFS--QDKLA 368

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +E I  ++ +   L++D+LD+A +    + LN   + L  +++   +++       ++
Sbjct: 369 IGLETIERNAKLQAQLIDDLLDMARILRDKLVLNPVPLDLGRVIDAAIETVQPSAAAKSV 428

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            I+      +G    D  RL Q+   +L+NA+ F  +G  V +  A+        VK+NG
Sbjct: 429 VIEK-HFSAVGQVSGDAARLQQVIWNLLANAVKFVPEGGRVQIGLAQIGDRIQIQVKDNG 487

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
             I  D    VF  F        R   G+GLGL+IV   + +HGG ++  S  +G
Sbjct: 488 KGIKPDFLPYVFESFRQADASTTRTFGGLGLGLAIVRQIVEMHGGTITADSEGDG 542


>gi|46199663|ref|YP_005330.1| phosphate regulon sensor protein phoR [Thermus thermophilus HB27]
 gi|46197289|gb|AAS81703.1| phosphate regulon sensor protein phoR [Thermus thermophilus HB27]
          Length = 373

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL K ++ +   +  V++ELR+PL  + G+ + L     G L+ +++   E I      
Sbjct: 138 EALEKVEKTRAELIGTVAHELRTPLAALQGYAEGLMD---GVLSKEKA--AEGILREVKA 192

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+  ++ V+A  +++    +    LL E      +      + + + +   L  
Sbjct: 193 MRRLVEDLSLVSRVEAKAVEIRPKPLDPKGLLEEALARFQSAFQAKGVALSLEAQDPLPQ 252

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +R+LQ+ + +L+NA+  + +G  V L+A R      F V + G  IPE+    +F
Sbjct: 253 VWADEERVLQVLANLLTNALRHTPQGGEVRLRAFRQGEAVAFQVADTGPGIPEEHLPHIF 312

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A   +  G G+GL++ +  +   GG + + S     TT    +P
Sbjct: 313 ERFYRVDKARSRKEGGSGVGLTVAKGLVEAMGGRIFVESRVGEGTTFTFTLP 364


>gi|17231253|ref|NP_487801.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132895|dbj|BAB75460.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1550

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 10/220 (4%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A   K++F+ ++S+E+R+P+  ++G T L+  +    LN +Q  ++E I  S   LL L+
Sbjct: 887  ASHAKSAFLANMSHEIRTPMNAVLGMTGLMLET---LLNQEQRDFMETIRISGDALLTLI 943

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            N+ILDL+ ++AG M L      L+  + EV   +A + H   + I  +    +      D
Sbjct: 944  NEILDLSKLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSKGLEIAALIYRHVPIQLQGD 1003

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
              RL QI   ++ NA+ F+S G  V+   L++       I F+V ++G  I  +    +F
Sbjct: 1004 ASRLRQILMNLIGNAIKFTSFGEVVMRVELRSETPTTAIIHFAVTDSGLGITLEDQHKLF 1063

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              F        R+  G GLGL+I +  + L GG + + S 
Sbjct: 1064 TPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQ 1103


>gi|325262857|ref|ZP_08129593.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
 gi|324031951|gb|EGB93230.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
          Length = 581

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 15/257 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           NA  +L F+ +  S +  + +    E    A+  K+ F+  +S+E+R+P+  I G T + 
Sbjct: 170 NAGFLLLFIMLWVSGKHRKKVQMALETAEHANRAKSEFLSRMSHEIRTPMNGITGMTSIA 229

Query: 595 KTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           K     SLN   K    +  I  SS  LL+L+ND+LD++ +++G ++L      L ++  
Sbjct: 230 KK----SLNDPGKLQDCLNKIELSSGYLLSLLNDVLDMSRIESGKLELECRPFNLTEVFE 285

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +      K  +  I ++    D ++ S + D  R+ Q+F  ++SNA+ F+  G  VIL+
Sbjct: 286 RIYVMFKQKAEDAGISLEFQCGDIEVPSVIGDNLRITQVFVNLISNALKFTPAGGRVILE 345

Query: 712 AAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           A             F+V ++G  I E+  K +F  F        R+  G GLGL+I  +F
Sbjct: 346 AHETEIKDQEVSLQFTVTDSGIGINEEFQKRIFIPFEQEQSGTARQYGGTGLGLAICSNF 405

Query: 765 INLHGGHVSI-SSSDEG 780
           + L GG +S+ S + EG
Sbjct: 406 VELMGGQISVYSKTGEG 422


>gi|293376179|ref|ZP_06622424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292645166|gb|EFF63231.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 623

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 140/281 (49%), Gaps = 21/281 (7%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDS-VRAERALTEKNE-------ALRKA---DEIKNSFVQH 575
           +Y+I P  N+    +FV + ++ +  ER L  K+        A +KA   ++ K  F+  
Sbjct: 336 DYTIPPGINSSWRFSFVRIRNAYLENERLLAVKDNQSQELEYAWKKALVANQAKTHFLAK 395

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+EL++PL  I G+  LL   KL   N KQ + +E I  SS +LL  V+++LD + ++ 
Sbjct: 396 VSHELKTPLNAIKGYIQLL---KLSIDNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIED 452

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694
           G +KL   TI L    + +++       + ++   V  D ++ S +  D  R+ QI   +
Sbjct: 453 GKVKLEIDTIDLFHTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIINL 512

Query: 695 LSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV--SNAHR 748
           +SNA+ F+  G   +   L    +N  ++   VK+ G  I E+   S+F+ F   +N+  
Sbjct: 513 MSNALKFTEHGKIEVSFDLDYQTENEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSIS 572

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G GLGLSI +    + GG++ + S     +T    +P
Sbjct: 573 RQFGGTGLGLSISKRLAEVMGGNLIVESKVNVGSTFTLFLP 613


>gi|239787453|emb|CAX83925.1| Sensor protein [uncultured bacterium]
          Length = 844

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 115/226 (50%), Gaps = 13/226 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +++AL  A + K+ F+  +S+E+R+P+  ++G  +LL       L  ++ + +     S 
Sbjct: 155 RDQAL-AASQAKSLFMATMSHEIRTPMNVVLGMLELLGDL---PLEHERREQLRLAYGSG 210

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ L++++LD A ++A  + L+     L  L++E   ++AT  H   I +       +
Sbjct: 211 KTLMALIDNVLDFAKIEADRLTLDEMDFDLRALVDESALTLATLAHTREIELTPFFPHSM 270

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSI 730
            + V  D  RL QIF+ +L NA+ F+ +G +V L          +  +++F V++ G  +
Sbjct: 271 PTAVRGDINRLRQIFTNLLGNAIKFTPEGGSVELYGGPVGLVPGNRIEYLFEVRDTGPGV 330

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           P    + +F +F    HR  +   G GLGL+I +  + + GG + +
Sbjct: 331 PVADRERIFEQFAQGEHRHDQGYSGSGLGLAISKRLVEMMGGAIGV 376


>gi|237718503|ref|ZP_04548984.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229452210|gb|EEO58001.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 795

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +R L   N+  R+  + +   +  ++++LRSPL  I G  +LL   +  ++   Q +Y
Sbjct: 295 RYQRQLEISNKENRELIQSRKRMMLTIAHDLRSPLAIIRGAAELLPGEQERAM---QEEY 351

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  +S  +L+LV+ ++D   +D G ++ N S   L  L  E+  + A  + +  +R+
Sbjct: 352 AGNIRHASDYMLSLVDTLMDFYLLDTGQVRENVSIFRLESLFREIADNHAPLVKKKRLRM 411

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                G      +DR  L QI + +LSNA+ F+ KG  + L+AA   G+    V++ G+ 
Sbjct: 412 LTRFSGMDAVVCSDRGHLQQIVNNLLSNALKFTVKG-YIRLEAAYHEGELRIKVQDTGTG 470

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEG 780
           + E   + +F+ F  + NA RG   G GLGL+I    ++  GG + + S  DEG
Sbjct: 471 MNEGDRQRIFDAFERLDNA-RGI-SGFGLGLAITSRLVSQMGGFIRVESRPDEG 522


>gi|229082672|ref|ZP_04215130.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
 gi|229181711|ref|ZP_04309034.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228601744|gb|EEK59242.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228700638|gb|EEL53166.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
          Length = 588

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 419

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 420 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 477

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V  A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|90413941|ref|ZP_01221926.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK]
 gi|90325003|gb|EAS41518.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK]
          Length = 908

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 10/224 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   KA+  K+SF+ ++S+E+R+PL  IIG + +L  ++   LN  Q++Y++ I  SS  
Sbjct: 375 EEAEKANVAKSSFLANMSHEIRTPLNGIIGMSGILSDTE---LNPSQAEYLQTIETSSQT 431

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LL L+NDILDL+ +++G + L+     L +++ +    +  K  E  + +++  D +L  
Sbjct: 432 LLLLINDILDLSKIESGNLVLSPHESNLAEVVYDTITIVQAKASEQGLNLQIQLDPELPT 491

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
           S + D  RL Q+   ++SNA+ F+ +GS  +     D GD     +FS+K+ G  I +D 
Sbjct: 492 SVMLDEHRLRQVLMNLMSNAVKFTLQGSVTLSITYTDIGDKKASLLFSIKDTGIGIEKDK 551

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + VF  F        R+  G GLGL+I    + L GG + + S
Sbjct: 552 QQQVFAPFTQEDGSITRQFGGTGLGLAICRQLVELLGGSIELKS 595


>gi|317494012|ref|ZP_07952428.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917785|gb|EFV39128.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 780

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 28/241 (11%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   N +Q  Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---NQEQLNY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV----------LNDLLNEVKQSIA 659
           ++ I  S+  L N+ NDI+++  ++   ++L+   I           L+ LL + K+   
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFLTDLENLSGLLVQPKKLDF 380

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           T  H+ N+  K+++DG          RL QI   ++ NA+ F+ KG   +       G  
Sbjct: 381 TLEHQPNLPHKILADGT---------RLRQILWNLIGNAVKFTQKGGVNVKVWRETGGKL 431

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            F VK++G  IP+D    +F  +  V + + G+   G G+GL++ +      GG + + S
Sbjct: 432 FFEVKDSGIGIPQDEQDKIFAMYYQVKDQNGGKPATGTGIGLAVSKRLAQNMGGDIVVRS 491

Query: 777 S 777
           +
Sbjct: 492 T 492


>gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1140

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 26/248 (10%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L  KN  L++ D++K+ F+ + S+ELR+PL  IIG  + L     GSL  K    +  I
Sbjct: 428 SLETKNAELQQLDKLKDEFLANTSHELRTPLNGIIGIAESLIDGATGSLPDKTVSNLALI 487

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVI 672
            +S   L NLVNDILD + +    M+L    I + + ++EV  +++  +  + ++++   
Sbjct: 488 VSSGRRLSNLVNDILDFSKLSHNNMELEIKPIGMRE-ISEVVLTLSQPLIGKKSLQLINA 546

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-----------STVILK---------- 711
              ++    AD  R+ QI   I+ NA+ F+ KG           S+ +L+          
Sbjct: 547 ISPEVPLVDADENRMQQILHNIIGNAIKFTEKGIVEVSAEVVDSSSKLLQEGYIKIVESN 606

Query: 712 -AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            ++  N     +V + G  IPED  + +F  F        R   G GLGL++ +  + LH
Sbjct: 607 DSSTQNQRLAITVADTGIGIPEDKLERIFEAFEQGDGSTAREYGGTGLGLAVTKQLVELH 666

Query: 769 GGHVSISS 776
            G + +SS
Sbjct: 667 QGEIWVSS 674


>gi|291514043|emb|CBK63253.1| PAS/PAC sensor signal transduction histidine kinase [Alistipes
           shahii WAL 8301]
          Length = 555

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 156/339 (46%), Gaps = 17/339 (5%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D L E +   GPD RI   N    S+    E+ +  G     +A +           DL
Sbjct: 218 VDTLHEPIVGLGPDRRILFMNREAFSVLNLREDAV--GRDAAEVALSN----------DL 265

Query: 500 FAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
              ++   +D E+ + +  L++ +D+   Y    + N    +T V   +       +   
Sbjct: 266 LRRLVRGVNDTEKDADKEPLKIYADNKESY--FQVENTPLYITPVGGREQQFVGNLIVLN 323

Query: 559 N-EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           N    ++ D  K +F+  VS+E+++P+++I+    LL   +LG+LN +Q Q V  I  SS
Sbjct: 324 NVTRFKELDSAKTNFISTVSHEMKTPISSILMSLQLLGDDRLGTLNGEQKQLVTSIKESS 383

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL++  ++L++  ++ G +KL        +L++   ++           ++V    K+
Sbjct: 384 DRLLSITGELLNMTQIETGKLKLIPKVTKPIELIDYAVKATQVLAERFCCFVEVDYPEKI 443

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D +++  + + +LSNA+  S + S +I+ A +        V++ G  I     KS
Sbjct: 444 SKLFVDNEKIAWVITNLLSNAIHHSPERSRIIVGAVQREKAVEIYVQDFGRGIDPRYHKS 503

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +F R+       + +G GLGL+I + F+  HGG +S+ S
Sbjct: 504 IFERYF-RVPGTKVQGSGLGLAISKEFVEAHGGTISVES 541


>gi|163943145|ref|YP_001648029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865342|gb|ABY46401.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 611

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L
Sbjct: 381 RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALL 439

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L+ +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++
Sbjct: 440 QLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKI 497

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V 
Sbjct: 498 TQVLYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVD 556

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A   Q  G GLGL+I +  I  HGG V   S +   TTI   +P
Sbjct: 557 KARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 601


>gi|332139904|ref|YP_004425642.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549926|gb|AEA96644.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1042

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 10/228 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA  +K+ F+ ++S+E+R+PL  I+GF+  L  +   SL + Q + V  ++ ++  LL +
Sbjct: 426 KASNVKSQFLANMSHEIRTPLNAILGFSKELNNA---SLPTDQQEQVRIVNTAADNLLTI 482

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VND+LD + ++AG + +N      N LL E+   +A   H  ++             + D
Sbjct: 483 VNDVLDFSKIEAGKLTINNQPFSPNKLLEEMVTIMAKSSHSKHLEFVFDLHPLPEKLIGD 542

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVF 739
             R+ Q+ + +LSNA+ F+S G+       R     I     ++++ G  I     K +F
Sbjct: 543 VFRIKQVLNNLLSNALKFTSSGTITFSVRGRALPHGIHEVNMTIEDTGIGISRQDRKKLF 602

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           N F  V +A     +G GLGL I    + L  G +++ S+  +G T I
Sbjct: 603 NAFSQVDDALNRNYQGTGLGLVISRELVRLMNGDLTLKSALGQGSTFI 650


>gi|219667788|ref|YP_002458223.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219538048|gb|ACL19787.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 356

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 10/241 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ +    L   + ++  F+ +VS+E++SPLT+I GF  LLK   L +   ++ +Y E I
Sbjct: 118 AINDMARGLGNLETMRQDFISNVSHEIQSPLTSISGFAGLLKKEDLSA--EQRRRYAEII 175

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L +L  ++L L T+D   + LN     L+  L  V   +  +    N+ ++  +
Sbjct: 176 EGESKRLSSLSENLLKLTTLDNSKLPLNRQDFRLDKQLEHVALLLEPQWSAKNLTLE--A 233

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
           +  L     D   L Q+++ +L NA+ F+ +G  + +   ++      ++ + G  I PE
Sbjct: 234 ELPLCILCGDEDLLSQVWTNLLHNAIKFTPEGGQISIGLKQEGDAAQVTIGDTGIGIGPE 293

Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D    +F RF   A + + R   G GLGLS+V+  ++LHGG + + S+    TT    +P
Sbjct: 294 DRIH-IFERFY-KADKARARSAGGNGLGLSLVKKIVDLHGGSIRVESTIGEGTTFEVFLP 351

Query: 790 S 790
            
Sbjct: 352 G 352


>gi|295689830|ref|YP_003593523.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295431733|gb|ADG10905.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 830

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 13/233 (5%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           ++F+  +S+ELR+PL  ++G    L   KL  L   + + V+ I  +   LL L+ND+LD
Sbjct: 459 STFLATMSHELRTPLNGVLGLAQAL---KLEPLEPGEREQVDLIEDAGRNLLTLLNDVLD 515

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           L+ ++AG +++      L      + +       E  I + +  D    S + D  R+ Q
Sbjct: 516 LSKIEAGKLQIAPLRADLRRKCERLGKIHGVLAAEKGIGLTLDIDDTPPSLIFDPVRVRQ 575

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDF----IFSVKNNGSSIPEDMCKSVFNRFVSN 745
             S +LSNA+ F+  G  V+       GD       +V + G  +  + C  +F  F   
Sbjct: 576 CVSNLLSNAIKFTETGGVVLSVRCEPTGDHEMMAYIAVSDTGIGMSPETCARLFGAFEQA 635

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT---TINCRIPSKE 792
                RR  G GLGL+I      L GG V++ S + EG T   +  C++P  E
Sbjct: 636 DATTARRFGGTGLGLNITRRLAKLMGGDVTVESREGEGSTFTLSFRCQVPLAE 688


>gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity
           potassium transport system [Janthinobacterium sp.
           Marseille]
 gi|151281091|gb|ABR89501.1| two-component regulatory protein sensor kinase for high-affinity
           potassium transport system [Janthinobacterium sp.
           Marseille]
          Length = 908

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 116/227 (51%), Gaps = 5/227 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ ++NS +  +S++LR+PLT ++G ++ L  SK   L + Q +    +   +  + NL
Sbjct: 666 ESERLRNSLLAAISHDLRTPLTALVGLSESLTRSK-PELAAAQQELAHALHEEALRMGNL 724

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + +G +KLN       +++    +++ + +  + +  ++     L +F  D
Sbjct: 725 VTNLLDMARIQSGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHTRLAPGLPLVNF--D 782

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
              + ++   +L NA  ++  GS + + AA  +G ++  +V +NG  +P    +++F +F
Sbjct: 783 AVLIERVLCNLLENASKYTPAGSQITI-AAELSGQYLDVAVYDNGPGLPPGQEEAIFEKF 841

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                     GVGLGL+I  + I  H G +    S +G   I   +P
Sbjct: 842 TRGERESATPGVGLGLAICRAIIEAHHGTIRGGHSPQGGAAIIFTLP 888


>gi|129306891|gb|ABO30408.1| GacS [Pseudomonas sp. F96.27]
          Length = 204

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+PL  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPLNGILGFTLLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSAQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|116250178|ref|YP_766016.1| transmembrane two-component sensor histidine kinase/response
           regulator hybrid [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254826|emb|CAK05900.1| putative transmembrane two-component sensor histidine
           kinase/response regulator hybrid [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 750

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591
           A   L   +V   V  ER + +  E  R+  E     K+  +  VS+E+R+PL+ I+G T
Sbjct: 197 ANGRLLLQSVARDVTDERLIAQGREEARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMT 256

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L+  ++L     +Q  Y+  I  S   L  LV D+LD +T++ G   L+  +  L  LL
Sbjct: 257 HLIAETRL---TQEQQNYLASIRQSGHALTQLVEDLLDFSTIEVGRFALHPRSESLRKLL 313

Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V + +A + HE  I I   +S     +   D  RL Q+   ++ NA+ F+  G  V +
Sbjct: 314 ESVVEMLAHRAHEKGIEIGATVSSDVPENMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 372

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + + D  D   +V ++G  +  +    VF  F        +  G GLGL+I    +    
Sbjct: 373 RVSLDGDDLSITVTDSGPGMTAEEQARVFGEFEQGGSVTDKSSGTGLGLAISARIMREFN 432

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G ++++S     +    R P
Sbjct: 433 GALTVASEKGRGSEFTIRFP 452


>gi|289669452|ref|ZP_06490527.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 769

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 10/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    +    A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   ++
Sbjct: 94  EQELLRAKQTAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDMLQ 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +R+ +
Sbjct: 151 TATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLRLSL 210

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             +  +   V  D  RL Q+   ++ NA+ F+ +GS  I    L   R      F V++ 
Sbjct: 211 DIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDT 270

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S     +T 
Sbjct: 271 GIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 330

Query: 785 NCRIP 789
              IP
Sbjct: 331 WFEIP 335


>gi|194365517|ref|YP_002028127.1| response regulator receiver sensor signal transduction histidine
           kinase [Stenotrophomonas maltophilia R551-3]
 gi|194348321|gb|ACF51444.1| response regulator receiver sensor signal transduction histidine
           kinase [Stenotrophomonas maltophilia R551-3]
          Length = 377

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 140/290 (48%), Gaps = 16/290 (5%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE-KNEA 561
           +  S DD  ++ +G  E  +   L   + P    Q +L+ VNV   +  +R L + +NEA
Sbjct: 94  LTASPDDPVRAFKGY-ETGAVDFLHKPVAP----QVILSKVNVFIELYQQRQLLKARNEA 148

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +A ++  +    ++++LR+PL+ I+   D L    L   N+   Q ++Y+ AS+  + 
Sbjct: 149 LERALKLNETMAAVLTHDLRTPLSAILLCVDKLALD-LPQGNAGAQQTLQYLEASTLRMA 207

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +V  +LD + + +G ++L  ST  L ++   V   + +      IR+    D +L    
Sbjct: 208 RMVEQLLDFSRIRSGGLRLQASTCDLAEVTRAVVAEVGSAHGAGRIRLDTHGDTQLQG-- 265

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+ + ++ NA+   ++    +    RD  + +  V+N G  I   +   +F  
Sbjct: 266 -DLDRLGQVAANLIGNALTHGNEAQVEV--DGRDPRNVLLRVRNAG-EIDAALLPRLFEP 321

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F ++ H  Q  G+GLGL IV+ F+  HGG +  + ++ G       +P +
Sbjct: 322 FKASFH--QSNGLGLGLYIVDQFVRAHGGRIG-ARNEAGQVVFEALLPRR 368


>gi|170738019|ref|YP_001779279.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169820207|gb|ACA94789.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1140

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 4/214 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ +V  +S+ELR+PL +I+G+  LL  +K   L   +   V  I  S   LL LV
Sbjct: 683 ANQAKSRYVSGLSHELRTPLNSILGYAQLLLQAK-EELTPMRYNAVRTIHRSGEHLLALV 741

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           + +LD+A ++AG ++LN + + L D +  +   +  +  E  +   V + G+L + V   
Sbjct: 742 DGLLDIARIEAGKLQLNIAKVSLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRTD 801

Query: 685 QRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           Q+ + QI + ++ NA+ F+S G T+ L+ +       F V + G  IP    + +F  F 
Sbjct: 802 QKCMSQILTNLIGNAIRFTSSG-TITLRVSHVLDTLKFEVIDTGPGIPPAELERLFLPFE 860

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              A      G GLGL+I        GG + + S
Sbjct: 861 RGEAAHAYDHGAGLGLTICRLLTQALGGSLEVDS 894


>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 944

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 178/429 (41%), Gaps = 72/429 (16%)

Query: 393 HLPNGQT----LHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           H P G      L V+    P    GG +    ++T ++++E      ++ Q E      E
Sbjct: 94  HRPGGSGPAHYLRVVTLPLPGEGDGGWVLQLHDMTARLEVEAS----LRQQKEFF----E 145

Query: 446 GVAVFGPDGRIKLSNPAFRSL-WKTEENRL---SP----GTHIRNIAATCSRYYNESDGW 497
            V +  P   I ++   FR L W  E  RL   SP    G HI  + AT      E++  
Sbjct: 146 AVVINSPVAIITITR-QFRVLSWNPEATRLFGYSPAEALGKHIFELVATEPTVLPEAE-- 202

Query: 498 DLFAAIITSFDDERKSLQ-GTLELLSDSV--------LEYSIIPLPNAQTMLTFV----N 544
                        R+ +Q G L  ++  V        +E   +P+      L F+    +
Sbjct: 203 ----------QASREVVQRGRLRSVTRRVRKDGSVVDVELRALPVSVGGRQLGFIAIYHD 252

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +TD  RA +A    N+A       K+ F+  +S+E+R+P+  IIG T LL      +L  
Sbjct: 253 ITDLERARKAAEAANQA-------KSLFLATMSHEIRTPMNAIIGMTGLLLDR---ALTE 302

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  +V  I  SS  LL L+ND+LD + ++AG  +       L   +  V   +A +  E
Sbjct: 303 EQRDFVATIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASE 362

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNG 717
             + +       L    V D  RL Q+   ++ NA+ F+  G  V+      L       
Sbjct: 363 KGLDLGCDLAPPLPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVSVEGLALGGTEGAA 422

Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           D    FSV++ G  IP+D    +F  F        RR  G GLGL+I +  +   GG + 
Sbjct: 423 DWELTFSVQDTGLGIPDDRRTGLFQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTIW 482

Query: 774 ISSSDEGVT 782
           + S  EGV 
Sbjct: 483 VES--EGVP 489


>gi|28867566|ref|NP_790185.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28850801|gb|AAO53880.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 595

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 118/253 (46%), Gaps = 13/253 (5%)

Query: 525 VLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +L YS+ P+ + +  +L  V V   V  +RA           + +++ FV   S+ELR+P
Sbjct: 341 LLTYSMTPVSHTKGHILGAVMVLHDVTEQRAF----------ERVRSEFVLRASHELRTP 390

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T +     LL+     +  S+++  +  ++     L+ L+ND+L+ +    G+ KL  +
Sbjct: 391 VTGMHMAFGLLQERLHFAPESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLA 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  LL E +     +  E  I + +     +    AD+ +L ++   +L NA+  + 
Sbjct: 451 PCSIETLLEEARARYEGQAQEQEIVLMLDIQEPMPRLHADQSQLERVLDNLLDNALRHTP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
               + L+A R     I SV++NG  I       +F  FV    +  + G GLGL++ + 
Sbjct: 511 PNGLIRLQARRHGERAIISVEDNGEGIAYGQQGRIFEPFVQVGRK--KGGAGLGLALCKE 568

Query: 764 FINLHGGHVSISS 776
            + LHGG + + S
Sbjct: 569 IVQLHGGRMGVYS 581


>gi|315224472|ref|ZP_07866299.1| DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga ochracea F0287]
 gi|314945493|gb|EFS97515.1| DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga ochracea F0287]
          Length = 934

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 129/253 (50%), Gaps = 12/253 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            T+  R +  L E +  L +A + K  F  ++S+E ++PL+ I+G    L      SL  
Sbjct: 390 ATELQRQKERLEEISAQLEEATQAKLLFFTNISHEFKTPLSLILGPVQTLLAH--NSLPK 447

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++   +  I  +S  LL+L++++++  + + G M++ ++   L   L E+    + ++ +
Sbjct: 448 EEQDLLFLIKKNSNRLLHLISEVIEFRSYENGKMQMYFTKGNLKRFLTELNSFFSDRIKQ 507

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-------- 716
             +  + +++        D++++ +I+  +LSNA+ F+ +G ++ +   +++        
Sbjct: 508 KKLNFQFLAEDTSFEMAFDKEKVEKIYFNLLSNALKFTPQGGSITVSLEKEDLPLTPSKG 567

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G  +  V N+GS IP+D    VF  F       +  G G+GL++V++ +  H G +S+ S
Sbjct: 568 GVAVLRVFNSGSYIPKDKQSEVFEHFYKINPDSE--GSGIGLALVQALVASHNGTISVES 625

Query: 777 SDEGVTTINCRIP 789
           ++   TT   R+P
Sbjct: 626 TEGEGTTFVIRLP 638


>gi|240142880|ref|YP_002967393.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
 gi|240012827|gb|ACS44052.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
          Length = 679

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 10/213 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  VS+ELR+PL  IIG +DLL  ++   L++ Q++    +S +   LL  +N IL
Sbjct: 185 KSRFMASVSHELRTPLNAIIGMSDLLGETR---LDADQTEMNRTVSTAGRALLAHINTIL 241

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++ G M    +   L D + +    +  +     +  +   D  L   V   R+ L
Sbjct: 242 DFSRLEVGRMPAEKAPFALRDAVADAASMVVAQARSKGLAFQTEVDDDLPQGVCGGRRHL 301

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
            ++   + +NA+ F++ G TV +   R +GD + F V++ G  I  +    +F  F S A
Sbjct: 302 EEVLVNLAANAVKFTADG-TVSVHVRRADGDMVRFEVRDTGIGIAPEARGRIFEAF-SQA 359

Query: 747 HR---GQRRGVGLGLSIVESFINLHGGHVSISS 776
                    G GLGL+I    + LHGG + + S
Sbjct: 360 DETILDSFGGTGLGLAICRQLVTLHGGEIGVDS 392


>gi|68248827|ref|YP_247939.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 86-028NP]
 gi|68057026|gb|AAX87279.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 86-028NP]
          Length = 613

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 113 VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 169

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 170 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 229

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 230 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 288

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 289 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 348

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 349 TFHLTLHAQE 358


>gi|332703162|ref|ZP_08423250.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553311|gb|EGJ50355.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 657

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 125/255 (49%), Gaps = 18/255 (7%)

Query: 537 QTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +T+L+ +N   +++  E  L +  +   +A++ K++F+  +S+E+R+P+  ++G  +L  
Sbjct: 240 ETVLSILNEITALKVTEEELRQAKDLAEEANQAKSAFLAAMSHEIRTPMNGVLGMIEL-- 297

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            + +    SK  QY++    S   LL ++NDILDL+ ++AG++ +         +L  + 
Sbjct: 298 -ALMRRPTSKVKQYLDLAKQSGQALLLIINDILDLSKIEAGMITIEEQPFNPRAMLESLF 356

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----- 709
            +++    +  +  +      L S  + D  RL Q+   I+ NA+ F+ +G   +     
Sbjct: 357 ATMSLAAEQKGLEFRSNVASALSSMALGDEGRLRQVLFNIIGNAIKFTEQGEIAVSIDVP 416

Query: 710 -------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIV 761
                  +  A+ +   + S+++ G  IP  M + +F+ F   N    +  G GLGL+I 
Sbjct: 417 RGEKWRDICGAKGSFCLLASIRDTGVGIPAHMLEKIFDSFTQVNGRNYEFGGTGLGLAIS 476

Query: 762 ESFINLHGGHVSISS 776
              + + GG + + S
Sbjct: 477 RQLVEMMGGKIWVES 491


>gi|313622296|gb|EFR92795.1| heme sensor protein HssS [Listeria innocua FSL J1-023]
          Length = 459

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 12/233 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTIL 620
           L K++  +  FV +VS+EL+SPLT++ GF  LL +   G+L  K Q +Y+  +S  +T L
Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFARLLGS---GTLTEKEQKEYLTVLSEETTRL 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679
            +L   +L LA++D          + L +   ++ Q       E  + I + ++D    +
Sbjct: 289 SSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSWREKELTINLELAD---IN 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSV 738
           +  D + L Q++S +L+NA+ ++ K   + ++   +  +    V N+G  I  EDM K +
Sbjct: 346 YSGDAELLYQVWSNLLNNAIKYTPKSGNIQVRLYEETTNVFVEVWNSGVCISKEDMAK-I 404

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF   S +   +    GLGLSI +  I LH G +++ S+ +  TT   ++P
Sbjct: 405 FERFYKASQSRTREEGSSGLGLSICKKIITLHHGEITVESNTKKGTTFKVKLP 457


>gi|291559470|emb|CBL38270.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 1068

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 135/271 (49%), Gaps = 27/271 (9%)

Query: 537 QTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +L  ++VT   +AE    +AL E   +   A+  K  F+ ++S+++R+P+  I+G T 
Sbjct: 523 KVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTA 582

Query: 593 LLKTSKLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +      G+    Q + +E    I+ SS  LL L+N++LD+A +++G M L      L+D
Sbjct: 583 IA-----GANIESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSD 637

Query: 650 LLNEV----KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++ +    K  +    H  +I I  I      +   D  R+ Q+F  ++SNA+ ++  G
Sbjct: 638 LVDNLITITKPVLDEHKHNFDIHINHIEH---EAVCGDSLRIQQVFVNLMSNAIKYTPDG 694

Query: 706 STVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLG 757
             +            + G + F++++NG  +  +  K +F+ F  ++ HR  R +G GLG
Sbjct: 695 GNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTGLG 754

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++I  + +NL  G + + S+    T I   I
Sbjct: 755 MAISRNIVNLMDGTIKVDSTLHKGTKITVTI 785


>gi|289643245|ref|ZP_06475371.1| PAS/PAC sensor signal transduction histidine kinase [Frankia
           symbiont of Datisca glomerata]
 gi|289506950|gb|EFD27923.1| PAS/PAC sensor signal transduction histidine kinase [Frankia
           symbiont of Datisca glomerata]
          Length = 391

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 155/358 (43%), Gaps = 31/358 (8%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D L +G+ +   +GRI++ N A   +        +PG H+  +        N  D W+  
Sbjct: 51  DDLPDGIVIVDREGRIEVFNAAAARITGVSAA-TTPGQHLTEVLPLLDERGN--DWWECS 107

Query: 501 AAI-----ITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                   +T   + R +L  QG    L+ +V    +    + Q     +++ D+   ER
Sbjct: 108 RVTRGLPRVTGQPERRLTLARQGDERDLNVTVRYVRV----DGQLAHVSLSLRDTASRER 163

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEY 612
              E+N A           V  V++ELRSPLT++ GFT  L  +K      +Q +  +  
Sbjct: 164 --MERNRA---------DLVSTVAHELRSPLTSVKGFTATL-LAKWDRFTEEQKKLMLNT 211

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  +  L+ ++LD++ +D+G +++    + L   L  V           + R  V 
Sbjct: 212 VNTDADRVTRLLAEVLDVSRIDSGRIQMRKQIVDLGQTLRRVVDGKVAAGEATHDRFVVR 271

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           ++G+L     D  ++ Q+   ++ NA+   +   T++++      +   +V + G  +PE
Sbjct: 272 AEGELPEMWLDSDKIEQVLHNLVDNALRHGAGTVTIVMRGTPSGAE--VTVADEGDGVPE 329

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                VF +F   A RG   G GLGL I  + I  HGG +++  +  G       +P+
Sbjct: 330 ASASRVFTKFWRGATRGN--GTGLGLYIARALIEAHGGSITVGRAPGGGAEFRFVVPA 385


>gi|229014631|ref|ZP_04171745.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
 gi|228746642|gb|EEL96531.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
          Length = 611

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L
Sbjct: 381 RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALL 439

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L+ +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++
Sbjct: 440 QLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKI 497

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V 
Sbjct: 498 TQVLYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVD 556

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A   Q  G GLGL+I +  I  HGG V   S +   TTI   +P
Sbjct: 557 KARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 601


>gi|229065124|ref|ZP_04200417.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
 gi|228716153|gb|EEL67872.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
          Length = 586

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L
Sbjct: 356 RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALL 414

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L+ +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++
Sbjct: 415 QLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKI 472

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V 
Sbjct: 473 TQVLYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVD 531

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A   Q  G GLGL+I +  I  HGG V   S +   TTI   +P
Sbjct: 532 KARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576


>gi|116873389|ref|YP_850170.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742267|emb|CAK21391.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 594

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 127/247 (51%), Gaps = 9/247 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LT +   + VR+  A+       ++ +++K+ FV +VS+ELR+P++ + G+++ +   
Sbjct: 335 AILTLLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI-ID 393

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   + +  ++ + I   S  +  LVND+LDLA ++AG   ++   + +  LL +V  +
Sbjct: 394 GVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNHMDNQKMPIAPLLEKVIAN 453

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAAR 714
                 EN + + +  +     +  D+ R+ Q+   ++ NA+  + K      VILK   
Sbjct: 454 FDVLAKENFVELGLELETPNLEYSYDQDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTI 513

Query: 715 DN--GDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHG 769
           D    + + +V +NGS I E+    +F RF        RG+  G G+GL+IV++ +  H 
Sbjct: 514 DKTRNNLVITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHN 573

Query: 770 GHVSISS 776
           G +S+ S
Sbjct: 574 GKISVES 580


>gi|331002012|ref|ZP_08325532.1| hypothetical protein HMPREF0491_00394 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411808|gb|EGG91213.1| hypothetical protein HMPREF0491_00394 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 509

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 148/300 (49%), Gaps = 21/300 (7%)

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           N+    D  A    +  DE ++L   +  +SD  LE +I  L NA  +L      + ++ 
Sbjct: 227 NKMGKLDFTAKYTGNRSDEIQTLGQNMNYMSDR-LEKAINELQNANELLK-----EDIKR 280

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           + A+          DE++  F+ +VS+EL++P+  I G+ + L         S++  Y E
Sbjct: 281 KEAI----------DEMRRDFIANVSHELKTPIALIQGYAEGLNEGLCEDEESRK-YYTE 329

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   S  +  +V  +L L+++++G   LN     +  L++ +  SI+  + E N+ I  
Sbjct: 330 VIMDESEKMNKMVKQLLTLSSLESGNSILNKEKFNITALISNILGSISILIGEKNVNIIF 389

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            S+ ++  + AD  ++ ++ +  +SNA+        + +    D  + IF+V N G+ IP
Sbjct: 390 DSNKEIYVY-ADEFKIEEVITNYISNAIHHVKDFGEIKITVDDDGKNIIFNVYNTGNPIP 448

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   +V+ +F  V  AH     G G+GLSIV++ I  H G+V + + ++GV     RIP
Sbjct: 449 KEDLGNVWEKFFKVDKAHSRAYGGSGIGLSIVKAIIEAHNGNVDVRNINDGV-EFGFRIP 507


>gi|329724647|gb|EGG61153.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU144]
          Length = 565

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 123/221 (55%), Gaps = 13/221 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K + ++  FV +VS+EL++P+T+I GF + L     G+ N +QS   ++  I   S  
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNR 393

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           + +LV D+LDL+ ++    +++NY    L++L   +  ++ T+ +  N RIK+ S+ +  
Sbjct: 394 IESLVTDLLDLSHIEQQKELEINYMN--LSELAINIIDNLQTQAY--NKRIKIQSEIEKD 449

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             + A   ++ Q+ + +LSNA+++SS+ + VI++  R++      +++ G  I E   K 
Sbjct: 450 VIIEAHENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKR 509

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +F RF  V  A      G GLGLSI +  +  H G + + S
Sbjct: 510 IFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKS 550


>gi|298530516|ref|ZP_07017918.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509890|gb|EFI33794.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 546

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+R L  +   L K +  KN F+   +++LR+PL +I  + +LL+      L+   +  +
Sbjct: 156 AQRELARQIVRLEKLNSQKNFFLGMAAHDLRNPLGSIKLYAELLQEDMKHQLSETGAGML 215

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENN 666
           + I + S  +L +V D+LD+  +D+G + L    +    V+ D L+ ++  +  +  + +
Sbjct: 216 DKIQSLSRFMLGMVEDLLDVTKIDSGQINLQLENVRPGRVVQDALDPLR--MLAREKDIS 273

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +   V+ D  L     D  +  Q+ + +L+NA+ +S  GSTV ++    +G  +  V + 
Sbjct: 274 LNCHVLED--LPQVNLDVAKFTQMVTNLLTNAIKYSPSGSTVDVRLYTRDGYLVLDVSDY 331

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG-QRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +    +F  + + + R  Q  G VGLGL+I    +  H G + + SS    TT 
Sbjct: 332 GQGIPGEEMDRLFAEYQTTSSRPTQGEGSVGLGLAIARRLVEAHDGTIEVQSSQGAGTTF 391

Query: 785 NCRIP 789
              +P
Sbjct: 392 TITLP 396


>gi|153003673|ref|YP_001377998.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152027246|gb|ABS25014.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 718

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK + LR+A E+K+ F+ ++S+E R+PL  +I F  +L     G LN +Q + V +  
Sbjct: 213 LDEKADYLRRASELKSRFLSNMSHEFRTPLNTVISFCRMLLDETDGPLNDEQRKQVGFAR 272

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  +L+LV+D+LDLA V+AG   +  S    ++L   ++  +   +    + +     
Sbjct: 273 RAAEGMLDLVSDLLDLAKVEAGKTTVRSSPFEASELFGALRGMLRPLLATTQVTLHFEDP 332

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPED 733
             L +   D  ++ QI    +SNA+ F+ +G   +  +AR  GD  +FSV + G  I  +
Sbjct: 333 VGLPTLYTDEGKISQILRNFISNALKFTERGEVRV--SARRQGDRVVFSVSDTGIGIARE 390

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F  +       QR  RG GLGL + +    L GG +++ S     +T +  +P
Sbjct: 391 DLDRIFQEYGQLDSPVQRRVRGTGLGLPLSKRLAELLGGRLAVKSEPGVGSTFSLEVP 448


>gi|86610220|ref|YP_478982.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558762|gb|ABD03719.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 886

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 124/249 (49%), Gaps = 16/249 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI---IGFTDLLKTSKLGSLNS 604
             R  + +  + + L++ +++K+ F+  VS+E+R+PLTN+   IGF      SK  +L  
Sbjct: 631 QARLYQTIQRQVQQLQELNQLKDEFLHMVSHEMRTPLTNMKLAIGFL-----SK-ANLTE 684

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +Y + +   +   L L+ND+L+L  +++G   L  + +   + +  + +    +  +
Sbjct: 685 RERRYFQILEMETNRELELINDLLELQALESGNKVLRLTCLSPQEWIPNLAEPFRLRAAQ 744

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FI 720
              + +V  D  L     D   L ++ S++L+NA  ++  G ++ L  ++ N +    ++
Sbjct: 745 QGQQFQVEWDPDLWPLCTDESLLSRVVSELLNNACKYTPTGESIYLSVSQANSNGRPGWL 804

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-S 777
            +V+N G  IP +    +F +F        R   G GLGLS+V+  + L  G + + S S
Sbjct: 805 ITVRNTGVEIPAEALPRLFEKFYRLPQLDCRNAGGTGLGLSLVQKAVELLQGSLRVESHS 864

Query: 778 DEGVTTINC 786
            + V  + C
Sbjct: 865 RQVVVQVWC 873


>gi|312890418|ref|ZP_07749955.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311297188|gb|EFQ74320.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 733

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 14/237 (5%)

Query: 549 VRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            + ERA  + +KN A  +A ++K  F+  +S+E+R+PL  +I    LL     G +  K+
Sbjct: 350 AQVERADIIDKKNRA-EQAAQVKQEFLSTMSHEIRTPLNAVITIAALLG----GKVKKKE 404

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q+V+ +  ++  LL ++NDILD   +D G   L         LL  +K +      E  
Sbjct: 405 KQFVDSLKFAANNLLLIINDILDFTKLDTGKSNLEMRPGNFKVLLENIKNTYENLAKEKG 464

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIF 721
           I + +  D  +  S+  D  +L QI S +++NA+ F+  G   I    L    +    +F
Sbjct: 465 IGLFLNIDPDVAQSYHLDETKLSQIISNLITNAIKFTDAGHIDINITKLSTTEETDCLLF 524

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +K+ G+ I +   + +F+ F        R+  G GLGL+IV+  + LHG  + +SS
Sbjct: 525 EIKDTGTGIAKGHLELIFDSFSQPQTITTRKQGGSGLGLAIVKKLVELHGSTIRVSS 581


>gi|229154352|ref|ZP_04282472.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342]
 gi|228629176|gb|EEK85883.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342]
          Length = 463

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+   SK  +   ++ +Y+  I   S  + NLV D+ 
Sbjct: 235 RSEFLASVAHELRTPLTYVRGYADI--ASKEATSPEQRLRYLSIIKDESDYITNLVQDLF 292

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +    + L+  L  + + +     E  I++       L   + D QR  
Sbjct: 293 SLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPSTLLVNL-DEQRFE 351

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   IL+NA   S + S + +    ++     ++++ G  IP +    +F+RF  V  A
Sbjct: 352 QVVVNILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKA 411

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 412 RSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLPS 455


>gi|325263090|ref|ZP_08129825.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031483|gb|EGB92763.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 675

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 136/242 (56%), Gaps = 10/242 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L++++ +K+ F+ ++S+EL++PLT  I  ++LL     G+LN +Q++YV+ I  SS  
Sbjct: 431 EELKESNMVKSRFLANISHELKTPLTGSINASELLLDELFGTLNERQTKYVKNIWLSSNQ 490

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLG 678
           LL L+NDILDL+ ++AG + +N +   +N++L E    + +  ++ +I  I  ++  +L 
Sbjct: 491 LLLLINDILDLSKINAGKLNVNPAVCFVNEVLEEAIGIVKSTTYKKSIELITSVTPDELE 550

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPE 732
            + AD+Q L Q+   +LSNA+ FS++ STV + A   N          F V + G  I +
Sbjct: 551 VW-ADKQLLKQVLYNLLSNAIKFSNENSTVFVSAGNVNNPENSRTYVRFCVSDQGIGIAK 609

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              + VF  F    N++  +  G GLGL + + ++ L GG + + S     T +   +P+
Sbjct: 610 KDLERVFVEFEQTDNSYSREYGGTGLGLPLSKKWVELQGGKMELHSELNVGTEVIFFLPA 669

Query: 791 KE 792
            E
Sbjct: 670 TE 671


>gi|309790681|ref|ZP_07685232.1| integral membrane sensor signal transduction histidine kinase
           [Oscillochloris trichoides DG6]
 gi|308227275|gb|EFO80952.1| integral membrane sensor signal transduction histidine kinase
           [Oscillochloris trichoides DG6]
          Length = 409

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   NE LR+ +  K++ +   S++LRSPL  I     L+  +      ++++  V+ I 
Sbjct: 172 LAAANERLRELNAFKDNLLMIASHDLRSPLGIIQNIAGLILDNPATPETTRRA--VQTIM 229

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S+  L +LV DILD+++++AG + L    I +  ++ +V +++        I + + +S
Sbjct: 230 SSAEQLNSLVADILDISSLEAGKVVLEPIIIQVGFIVEQVIENLRYSAEAKQIHLSLEVS 289

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L   +AD  +L Q+FS ++ NA+ F+  G  + +    +       V +NG  IP +
Sbjct: 290 PTNL-VVLADWHKLSQVFSNLIGNAIKFTPPGGWIAVTIKPEGEHICCEVADNGLGIPGE 348

Query: 734 MCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISS 776
               +F +F   AH       RG GLGL+IV+  + LHGG + + S
Sbjct: 349 AIPHIFEKF-QRAHPTGTNNERGSGLGLAIVQQLVELHGGKIEVHS 393


>gi|254670825|emb|CBA07227.1| putative two-component system sensor kinase [Neisseria meningitidis
           alpha153]
          Length = 398

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 14/219 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L K    +   + HVS+E+RSPL  +     L++         KQ QY++ +    T 
Sbjct: 158 EKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQP-----QKQEQYLKRLEGELTR 212

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGK 676
           +  LV ++L L+ ++   M L   ++ L   L    E  QSIA K   N   + + +DGK
Sbjct: 213 MDTLVGELLTLSRLETSNMALEKESLKLLPFLGNLVEDNQSIAQK---NGQTVTLSADGK 269

Query: 677 LG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +    + +A+   L + F  ++ NA+++S +GST+++   +D+  +I  V +NG  + E 
Sbjct: 270 IPENTTILANESYLYRAFDNVIRNAVNYSPEGSTILINIGQDHKHWIIDVTDNGPGVDEM 329

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
               +F  F        + G GLGL++ +  I  H G +
Sbjct: 330 QLPHIFTAFYRADSSANKPGTGLGLALTQHIIEQHCGKI 368


>gi|158318243|ref|YP_001510751.1| integral membrane sensor signal transduction histidine kinase
           [Frankia sp. EAN1pec]
 gi|158113648|gb|ABW15845.1| integral membrane sensor signal transduction histidine kinase
           [Frankia sp. EAN1pec]
          Length = 490

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F    S+ELR+PLT+I G+ DLL+   +    +  +  +  ++  +  +  LV+D+L LA
Sbjct: 253 FAADASHELRTPLTSIRGYVDLLRAGMVPPAETDDT--LRRVAEETARMQTLVDDLLYLA 310

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE----NNIRIKVISDGKLGSFV-ADRQR 686
            +D    +L     V++  L  + +  A  +        + ++V +  + G  V  D   
Sbjct: 311 HLD----ELRPRDRVVDVDLVTIAEDAAANLRAVDPGRPVTVEVEAGPEAGRHVLGDPDA 366

Query: 687 LLQIFSKILSNAMDFSSKGSTVILK--------AARDNGDFIFSVKNNGSSIPEDMCKSV 738
           L Q+   +L+NA   +  G+TV ++         A+D    + +V++ G  +P ++ + V
Sbjct: 367 LRQLLGNLLTNARVHTPAGTTVTVRVTGWDAATPAQDRA-AVLAVEDGGPGMPPEVARHV 425

Query: 739 FNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+RF   A    RG R G GLGLSIV +    HGG   +SS+ EG TT    +P 
Sbjct: 426 FDRFYRAAGSRARG-RSGSGLGLSIVAATAAAHGGRAEVSSTPEGGTTFRVYLPG 479


>gi|294814188|ref|ZP_06772831.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442586|ref|ZP_08217320.1| histidine kinase [Streptomyces clavuligerus ATCC 27064]
 gi|294326787|gb|EFG08430.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 549

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA      +++ A+E +      +++ELR+PL N+ G+ + L+   +        + ++ 
Sbjct: 303 RAFNRMAGSIQGAEERQRRLTGDIAHELRTPLANLRGYVEALQDGYV----EPTPELLDS 358

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +     +   +V+D+ DLA  +AG +  +   + L +LL   + +   +     + +   
Sbjct: 359 LHEEVMLQQRIVDDLQDLALAEAGALTYHRVDVDLRELLETCRTAHHARAEAATVTLTTA 418

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                    AD  RL Q+   +L+NA+  +  G TV L         I  V + G+ I E
Sbjct: 419 PPATPVLVHADPDRLRQVVGNLLTNAIRATPPGGTVTLALVPHGELAIIHVHDTGTGISE 478

Query: 733 DMCKSVFNRF-VSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSS 777
           D    +F+RF  ++A RG Q  G GLGL+IV   +  HGG V + S+
Sbjct: 479 DALPHLFDRFWRADAARGRQTGGSGLGLAIVRQIVRDHGGTVGVEST 525


>gi|167769136|ref|ZP_02441189.1| hypothetical protein ANACOL_00459 [Anaerotruncus colihominis DSM
           17241]
 gi|167668776|gb|EDS12906.1| hypothetical protein ANACOL_00459 [Anaerotruncus colihominis DSM
           17241]
          Length = 490

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 106/210 (50%), Gaps = 5/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           + SF  +VS+ELR+P+T I GF D +    +     K+  Y+  +S     L  LV  +L
Sbjct: 252 RRSFTANVSHELRTPMTTIAGFIDGILDGTIPP--EKRDDYLRIVSDEVKRLSRLVRSML 309

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           ++A ++AG +++      +N+ +     +    + E  I ++ + +GK+    AD   + 
Sbjct: 310 NIARIEAGELQIKPDLFDVNETVIRTVFTFEKPLEEKGIEVRGLDNGKV-MVEADPDLIH 368

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   ++ NA+ F ++   + +    D+      +KN+G  I +D    +F+RF     +
Sbjct: 369 QVVYNLIENAVKFCNEHGYIEVSYRADDAYTYVGIKNSGDGIAKDEIPHIFDRFYKTDKS 428

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              ++ G GLGL IV S +NLHGG + + S
Sbjct: 429 RSREKGGAGLGLHIVRSIVNLHGGDIVVRS 458


>gi|71908504|ref|YP_286091.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848125|gb|AAZ47621.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 858

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 11/230 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+    + A + K++F+ ++S+E+R+P+  IIG T +L+  K+      Q + +  I+
Sbjct: 334 LAEQVSQAKAASQAKSNFLANMSHEIRTPMNAIIGLTHMLRRDKV---TPAQGEKLIRIA 390

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL+++NDILDL+ ++AG ++L        ++L  +   +  +     I + V+  
Sbjct: 391 GAADHLLSVINDILDLSKIEAGKVELEAENFSPEEMLQRICSIVLLRAQAKGIEL-VVDA 449

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSS 729
           G+L + +  D  RL Q     LSNA+ F+ KGS +    +LK    +    F V+++G  
Sbjct: 450 GELPALLNGDVTRLGQALLNYLSNAVKFTEKGSIILRGNVLKETEKDVLVRFEVEDSGIG 509

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I  +    +F  F   +    R   G GLGL+I      L GG    SS+
Sbjct: 510 ISPEKLAHLFTAFEQASASISRHYGGTGLGLAISRHIAMLMGGEAGASST 559


>gi|53748095|emb|CAG38882.1| putative histidine kinase BvgS [Bordetella holmesii]
          Length = 1218

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 12/257 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + ++T+ +R    L E  E    A+  K +F+  +S+E+R+P+  IIG  +L+       
Sbjct: 691 WTDLTERMRLLHDLQEAKEEADAANRAKTTFLATMSHEIRTPMNAIIGMLELVLRRPPEQ 750

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +Q+  V Y SA S  LL+L+ DILD++ ++A  ++L      L  LL  V       
Sbjct: 751 AVDRQALMVAYDSARS--LLDLIGDILDISKIEADKLELTPVPTDLRRLLESVVNVFQGM 808

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +N + +++ I   ++ +   D  RL Q+ S ++SNA+ F+ KG   +    R     +
Sbjct: 809 ARQNGLSLRLDIGADQVPAVSIDASRLKQVVSNLVSNALKFTEKGGVTVSMQVRPVEQGL 868

Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                +V ++G  I     + +F  F      + A +G+  G GLGL+I    +   GG 
Sbjct: 869 ARIEIAVDDSGPGISAADRRRLFEPFTQVHQEARADKGRLAGTGLGLAISRRIVQAMGGS 928

Query: 772 VSISSSDEGVTTINCRI 788
             +SS     T I+ ++
Sbjct: 929 FDLSSIPGKGTRIDVQL 945


>gi|32472196|ref|NP_865190.1| signal-transducing histidine kinase [Rhodopirellula baltica SH 1]
 gi|32397568|emb|CAD72874.1| signal-transducing histidine kinase [Rhodopirellula baltica SH 1]
          Length = 659

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 129/266 (48%), Gaps = 11/266 (4%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALR 563
           T F+ E K   GT   +S   L  + I + N + T+ TF ++T+  +    L  K E L 
Sbjct: 368 TQFEFETKRADGTTMRIS---LVTATIEIENQSMTLATFTDITERHQVAMDLERKQEELE 424

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++E  + F    S++L++PL  I+  T+ ++      +  +  ++++ + A  + +  L
Sbjct: 425 RSNEDLDRFAYIASHDLKAPLRGIMHLTEWIEEDMPPQIGQEVREHLKMLQAQVSRMDML 484

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+L  A V      + +  + LN  L E+   ++         +K++   K+ S    
Sbjct: 485 LNDLLAYARVTRQTDAVEW--VDLNTALPELFAFMSPP-----PTMKLVMPTKMPSLSTA 537

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R  L QIF  +  N++  ++  S VI+ A   +  + F+V++NG  IPE   + +F  F 
Sbjct: 538 RGPLEQIFRNLFGNSIKHAASSSQVIVTAETTSDSYHFTVRDNGPGIPESSQERIFGMFQ 597

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHG 769
           +      RRG G+GL +V+  + + G
Sbjct: 598 TLESGKDRRGTGMGLHLVKRLVQVQG 623


>gi|325269953|ref|ZP_08136562.1| tetracycline resistance element regulator RteA [Prevotella
           multiformis DSM 16608]
 gi|324987676|gb|EGC19650.1| tetracycline resistance element regulator RteA [Prevotella
           multiformis DSM 16608]
          Length = 772

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           V+ Y II   NA  +  +   T D +   + + ++NEAL  +   +   V  +++ELR+P
Sbjct: 259 VISYIIIH-RNANRIKRYKQETADLIERLQQMAKRNEALITS---RKKAVHTITHELRTP 314

Query: 584 LTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           LT I G+  L++ +     N+ K   Y+  I  SS  +  ++N +L    +D G  + N+
Sbjct: 315 LTAITGYAGLIQKN----FNADKTGMYIRNIQQSSDRMREMLNTLLSFFRLDDGKEQPNF 370

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           ST  ++ + + ++           + + V +       + D++R+LQI + +LSNA+ F+
Sbjct: 371 STCRISSIAHTLESEFMPIAINKGLALTVTNHTD-AVVLTDKERILQIGNNLLSNAIKFT 429

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             G+ V L    DNG     VK+ GS + E+  + VF  F   ++   + G GLGLSIV+
Sbjct: 430 ENGA-VSLTMGYDNGMLKLIVKDTGSGMTEEEQQRVFGAFERLSNAAAKDGFGLGLSIVQ 488

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             + + GG + + S     +     IP
Sbjct: 489 RIVTMLGGTIQLKSEKGKGSRFTVEIP 515


>gi|262382235|ref|ZP_06075373.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262297412|gb|EEY85342.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 846

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 134/231 (58%), Gaps = 13/231 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++AD++K++F+ ++S+E+R+PL  I+GF++++  +++     +QS Y++ I  ++ +LL
Sbjct: 483 VKEADKLKSAFLANMSHEIRTPLNAIVGFSNII--AEIDDEVERQS-YLDIIHKNNDLLL 539

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++DILD + ++AG M  ++  + + D+  E+  + + KM  +   + +I D    S +
Sbjct: 540 QLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPSD---VDLIFDLDSPSVI 596

Query: 682 A--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
              D +R++Q+ S  ++NA+ F++KGS  I       GDFI   VK+ G  I  +  + +
Sbjct: 597 VKTDERRVMQVISNFVNNAIKFTTKGSITIYYEIE--GDFIRVCVKDTGIGISAENQRRI 654

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF+      Q  G GLGL+I  + I   GG + + S + G +T    +P
Sbjct: 655 FERFIKVDTFQQ--GTGLGLTISRTIIEALGGKIGVDSEEGGGSTFWFTLP 703


>gi|229020690|ref|ZP_04177418.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
 gi|229026905|ref|ZP_04183229.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228734408|gb|EEL85078.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228740605|gb|EEL90875.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
          Length = 586

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L
Sbjct: 356 RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALL 414

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L+ +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++
Sbjct: 415 QLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKRSRFIDMDTDKI 472

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V 
Sbjct: 473 TQVLYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVD 531

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A   Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 532 KARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 576


>gi|197119990|ref|YP_002140417.1| PAS/GAF domain-containing heme-binding site containing sensor
           histidine kinase [Geobacter bemidjiensis Bem]
 gi|197089350|gb|ACH40621.1| sensor histidine kinase, PAS and GAF domain-containing, putative
           heme-binding site [Geobacter bemidjiensis Bem]
          Length = 665

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 39/260 (15%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+A  E+N    + D +KN F+  VS+E  +PLT+II   + L  +   S    +S  +E
Sbjct: 390 EQASLEQN----RLDRMKNQFLGMVSHEFNTPLTSIISGVEHLLQNGWHSEQEARS-VLE 444

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +      L  LV D+L L  V+A    L  S + L   L+E+   +  ++ E   R+ +
Sbjct: 445 LVRDGGLRLKGLVADLLKLIKVEARRGALETSAVHLRHFLDELAAQLQPQLEERGQRVTL 504

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------------ARDN 716
               +L  F ADR  L ++F ++L NA+ FS     +++                  R N
Sbjct: 505 AGLEELPFFDADRNYLERVFGELLQNAIRFSPHKGEILVTGRVVDRPALLERRETLERFN 564

Query: 717 GDFI----------FSVKNNGSSIPEDMCKSVFNRFV---------SNAHRGQRRGVGLG 757
            +F+            V++NG  IP +  + +F  F          S   R Q RG GLG
Sbjct: 565 PEFLRRCGERCYLEVEVRDNGIGIPPEEQQGIFGIFYEVGEIRHHSSGMSREQGRGAGLG 624

Query: 758 LSIVESFINLHGGHVSISSS 777
           L++V+  +  HGG V + S+
Sbjct: 625 LAMVKGMVEAHGGMVWVESA 644


>gi|89893206|ref|YP_516693.1| hypothetical protein DSY0460 [Desulfitobacterium hafniense Y51]
 gi|219666479|ref|YP_002456914.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
 gi|89332654|dbj|BAE82249.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536739|gb|ACL18478.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
          Length = 1018

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 14/231 (6%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D++K+ F+   S+EL++PL  II  +  L     GSL+  Q++ +  I++    L  LV 
Sbjct: 428 DKLKDDFLAKTSHELKTPLNGIINISQSLLDGAGGSLSRAQAEDIRLITSIGKRLSTLVY 487

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA------TKMHENNIRIKVISDGKLGS 679
           DILD + +   +M +    + L+  +++V +S         K     +  K+  +  L  
Sbjct: 488 DILDYSKLK--VMDIQLHIVCLD--VHQVAESTVDIFRYLIKGRPITLENKIPPNQHL-- 541

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  RL QIFS +L N++ ++  GS + L   +D G     V + G  IP D  K +F
Sbjct: 542 IWADENRLKQIFSNLLDNSLKYTELGS-ISLSCRQDGGFLWIQVSDTGIGIPADKLKDIF 600

Query: 740 NRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +         +RG+GLGL+I +  I LHGG +   S     T+    IP
Sbjct: 601 APYEQLGEQSANQRGIGLGLTITQQLIELHGGQIVARSEPGQGTSFTFSIP 651


>gi|295094109|emb|CBK83200.1| Osmosensitive K+ channel histidine kinase [Coprococcus sp. ART55/1]
          Length = 658

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 121/224 (54%), Gaps = 11/224 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISA 615
           E+   L K+++++   ++ +S++LR+PL ++ G  D LL         +KQ  Y + I  
Sbjct: 419 ERAADLAKSEQLRADLLRSISHDLRTPLCSVSGNADTLLHNGNCLDEATKQQIYKD-IYD 477

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRIKVIS 673
            S  L+ +V ++L +  ++ G +KL  +  ++++++NE    +  K   H+  +R   + 
Sbjct: 478 DSEWLIGVVENLLYVTRLNDGRLKLELTDQLVDEVVNEAVSHLKKKSVGHKVTVRCDDLI 537

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             ++     D Q ++Q+   ++ NA+ ++ +GS + + A +  GD +  V +NG+ I +D
Sbjct: 538 LARM-----DAQLIVQVIVNLIDNALKYTEQGSEICVSAEKQGGDAVIRVADNGNGIADD 592

Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           M   +F  F +  N     RR  G+GL++ +S + LHGG ++++
Sbjct: 593 MKPHIFEMFYTGKNTVADSRRSFGIGLTLCKSIVELHGGTLTLT 636


>gi|237668492|ref|ZP_04528476.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237656840|gb|EEP54396.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 508

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 139/280 (49%), Gaps = 21/280 (7%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T  +DE  SL  +L +LS++ L  ++I L +    L      + +  ER +    E +RK
Sbjct: 231 TEREDEIGSLAHSLNMLSNN-LHNALIDLQDKNKKLE-----NDIERERQI----ETMRK 280

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
                  F  +VS+EL++P+  I G+ + LK   +   ++  + Y+E I   S  +  LV
Sbjct: 281 ------EFTANVSHELKTPIGIIEGYAEGLKDGIVKGEDA--ALYLETIIDESKKMSVLV 332

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ++L+L+ +++G  K N+    +N L+ +V +    +   +   +   S        AD 
Sbjct: 333 TNMLELSKLESGASKPNFEDFNINRLIAKVIRKHEPEFEAHKFNVNFNSSSPYSYVYADA 392

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV- 743
            ++ Q+F+ +++NA+ ++  G+ + +        F  SV+N G+SIPE     +F +F  
Sbjct: 393 FQMEQVFTNLITNAIKYTPPGNDININIDEGLDKFRLSVQNMGTSIPEPEIDKLFEKFYR 452

Query: 744 --SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
              +  R QR   GLGLSIV++ + LH    +I + D GV
Sbjct: 453 IDKSRERTQRNSTGLGLSIVKNILRLHNSQFNIRNIDGGV 492


>gi|153833234|ref|ZP_01985901.1| signal transduction histidine kinase [Vibrio harveyi HY01]
 gi|148870505|gb|EDL69420.1| signal transduction histidine kinase [Vibrio harveyi HY01]
          Length = 1200

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 125/255 (49%), Gaps = 9/255 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M  F ++++  + E AL   N    +A E +  F+  VS+ELR+P+  ++G  +LL+   
Sbjct: 638 MTVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLMELLEQD- 696

Query: 599 LGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              L  K+S+ +   +  S   L L VNDILD + +DA  ++L+     +   L    +S
Sbjct: 697 ---LERKESKELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQELGATLRS 753

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +   ++  ++  +       V D  R+ QI + +LSNA+ F+ +G+ VI+      
Sbjct: 754 FEKIIERKSLAFELNWTPTPHALVVLDWLRVSQIINNLLSNAVKFTEEGN-VIVSVHVSP 812

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F V++ G  +      ++F  FV       RR  G GLG+SIV+S +++  G + +
Sbjct: 813 TQLEFKVQDTGCGMNSAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLVDIMEGTIEV 872

Query: 775 SSSDEGVTTINCRIP 789
            S  E  TTI  R+P
Sbjct: 873 DSQTEQGTTITVRLP 887


>gi|126652242|ref|ZP_01724421.1| hypothetical protein BB14905_22488 [Bacillus sp. B14905]
 gi|126590974|gb|EAZ85086.1| hypothetical protein BB14905_22488 [Bacillus sp. B14905]
          Length = 895

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 137/263 (52%), Gaps = 9/263 (3%)

Query: 530 IIPLPNAQTMLTFVNVTD-SVRAERALTEK--NEALRKAD--EIKNSFVQHVSYELRSPL 584
           ++PLP  +  +    + D S   ++   +K   E  R+A+  +++ + ++ VS++LR+PL
Sbjct: 629 LLPLPAFERNILHAIINDFSFAMDKWYLQKLHEEVAREAEMEQMRANLLRAVSHDLRTPL 688

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I G  D+L  +     +S++++  E I  +S  L+ +V ++L ++ ++ G   L    
Sbjct: 689 TAISGNADILLNNAPLIPDSEKNKLYEDIYNNSKWLVQMVENLLAVSKLEDGQFALEMQL 748

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            ++ D++ E    +  +   + I  ++  +  L   + D + ++Q+F  I+ NA+ ++  
Sbjct: 749 ELVEDIIQEALSHVVHQNSSHTISYQIEPEFLLS--LMDARLIIQVFINIIDNALTYTPP 806

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVE 762
           GS + +     +G   FS+ +NG  I + +  S+F  F +        RRG+GLGL++ +
Sbjct: 807 GSDITILVKECDGLVNFSISDNGPGIDDSLKSSLFEPFTTGKVQRSDSRRGLGLGLALCQ 866

Query: 763 SFINLHGGHVSISSSDEGVTTIN 785
           + + LHG H++++ +    T  N
Sbjct: 867 TILKLHGSHITVADNKPQGTIFN 889


>gi|270293521|ref|ZP_06199723.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274988|gb|EFA20848.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 875

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 121/239 (50%), Gaps = 6/239 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + +  L +A   K  F  ++S++ R+PLT I    + L  ++  +L+ +  Q +E + 
Sbjct: 356 LEQLSHELEEATHAKLVFFTNISHDFRTPLTLIADPIEQLLANR--TLDGQPRQLLELMK 413

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +  ILL LVN ILD   V+ G M+L+     L D       S    + + +I      S
Sbjct: 414 KNVHILLRLVNQILDFRKVENGRMELHLEPFDLLDSFRGWNDSFRMALLKKHIAFSFEAS 473

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  +AD +++ +I+  + SNA+ ++ +   + ++ +    ++  SV N+GS I   
Sbjct: 474 PDTDFRMMADAEKMERIYFNLFSNAVKYTPENGKIAIRLSMTEQNYSLSVFNSGSYISST 533

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +++F RF      G + G G+GL++V +F+ +HGG+++  S D+G TT     P ++
Sbjct: 534 DVEAIFERFYQVD--GHQAGTGIGLALVRAFVEMHGGNIAAHSDDKG-TTFTVTFPKQD 589


>gi|254822465|ref|ZP_05227466.1| sensor histidine kinase [Mycobacterium intracellulare ATCC 13950]
          Length = 485

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 25/250 (10%)

Query: 553 RALTEKNEAL--RKADEIK-NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R L    EAL  R+A E +   FV   S+ELR+PL  I G+T+L  T ++G      +Q 
Sbjct: 240 RMLDHIAEALSARQASETRVRQFVADASHELRTPLAAIRGYTEL--TQRMGDDREAVAQA 297

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN----DLLNEVKQSIATKMHEN 665
           +  +++ +  +  LV D+L LA +D+G   L   ++ L+    D +N+    +A   H+ 
Sbjct: 298 MSRVASETERMTRLVEDLLLLARLDSG-RPLERESVDLSRLAVDAVNDAH--VAGPDHQW 354

Query: 666 NIRIK---VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + +    V+  G       D  RL Q+ + +L+NA   +  G+ V  + + +    +  
Sbjct: 355 ELDLPEEPVVVTG-------DAARLHQVLTNLLANARVHTGAGTVVTTRLSTEPSHTVLQ 407

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG--VGLGLSIVESFINLHGGHVSISSSDEG 780
           V +NG  IP  +   VF RF        R+G   GLGL+IV + +  H G +++ SS  G
Sbjct: 408 VIDNGPGIPAALQSEVFERFARGDSSRSRKGGSTGLGLAIVSAVVRAHNGTIAVDSS-PG 466

Query: 781 VTTINCRIPS 790
            T    R+P 
Sbjct: 467 RTEFTVRLPP 476


>gi|124268351|ref|YP_001022355.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124261126|gb|ABM96120.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 1077

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 117/253 (46%), Gaps = 8/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++ +R E A     E+   A+  KN F+  +S+ELR+PL  ++GF  LL   +   L+
Sbjct: 675 DISEHLRLEEA-EHARESAETANRAKNEFLSRMSHELRTPLNAMLGFAQLLDLDRGEPLH 733

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   +V  I  +   LL ++ND+LDL+ +++G + L   ++ L  L+      +  +  
Sbjct: 734 ERHRMWVTQIQQAGWHLLEMINDVLDLSRIESGTLSLQVESLSLEPLIAASMALVEPQAR 793

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGD 718
              +  ++ +++      + D  R+ QI + +LSNA+ ++ +   V +       RD   
Sbjct: 794 GRGLTLVRTMAEHAPLQVLGDATRVKQILTNLLSNAVKYNREAGEVRVSTRRTEDRDGTP 853

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +   V + G  I   +   +F  F      RG   G G+GL I +      GG + + S
Sbjct: 854 MLELDVCDTGLGIEPQLLTQLFQPFNRLGRERGATEGTGIGLVIAKLLAERQGGSLKVRS 913

Query: 777 SDEGVTTINCRIP 789
                +T   R+P
Sbjct: 914 EPGVGSTFTLRLP 926


>gi|14133665|gb|AAK54095.1|AF362376_1 histidine kinase DhkK [Dictyostelium discoideum]
          Length = 1213

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            LT   +A  +A + +  F+  +S+E+R+PL  +IG   LL+ S   +L  ++    + + 
Sbjct: 802  LTIAKDAAIEAYQARQEFLATMSHEIRTPLNGLIGMATLLRDSH--NLPPEEKTMAKAVK 859

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +   ILL LVNDILDL+ ++A  M L +    + +L  ++   ++ + +E NI +   +S
Sbjct: 860  SCGDILLRLVNDILDLSKLEANQMGLEHIPFRMRELTQQICHVLSGQANEKNIHLSCEVS 919

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI----------FS 722
            D      + D  R+LQI   +  NA+ F+  G   +I+    +  + +          F 
Sbjct: 920  DKIPSILLGDSGRILQILMNLTGNALKFTQSGYVKIIIDLIEEESELVSLKKGEYNISFR 979

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            VK+ G  +P +  + +F  FV       R+  G GLGL +    + L  G + +
Sbjct: 980  VKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVRLMKGEIGV 1033


>gi|15806193|ref|NP_294898.1| sensory box sensor histidine kinase [Deinococcus radiodurans R1]
 gi|6458911|gb|AAF10744.1|AE001966_6 sensory box sensor histidine kinase [Deinococcus radiodurans R1]
          Length = 1131

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 14/252 (5%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +AQ  L  +N +   R +R   E  EA R+ +    +F   VS++LR+PL +I+GF DLL
Sbjct: 877  DAQHELRQLNQSLEERVQRRTLELEEANRELE----AFSYSVSHDLRTPLRHIVGFGDLL 932

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            +     +L+ K  +Y+  I+ ++  +  L++ +L+ + +  G   L    + L +L+  V
Sbjct: 933  RKDSAEALSPKSQRYLGVITDAAGRMSGLIDSLLEFSRM--GRQPLRLVPVDLTELVERV 990

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS--SKGSTVILKA 712
             Q++        +R+ +     L     D   L  +F  +LSNA+ +S   + + V + A
Sbjct: 991  WQNLEPDRQGREVRLTLR---PLPQVPGDPALLELVFQNLLSNALKYSRTREVAQVTVAA 1047

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGH 771
            + D G    +V +NG          +F  F    HR +   G+G+GL+ V   +  HGG 
Sbjct: 1048 SEDGGAARITVTDNGVGFDPKYTDKLFGVF-QRLHRAEEFDGIGIGLANVRRIVTRHGGQ 1106

Query: 772  VSISS-SDEGVT 782
            VS SS   EG T
Sbjct: 1107 VSGSSVPGEGAT 1118


>gi|301053100|ref|YP_003791311.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375269|gb|ADK04173.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 603

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 143/293 (48%), Gaps = 33/293 (11%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----A 551
            +D    +  + DDE   L G++  LS                    VN+ D +     A
Sbjct: 324 NFDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVA 363

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   + Y +
Sbjct: 364 NTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTTYYTD 419

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   +  +  L+ ++L+LA +++G  KL+ +T  + +L+ +V   +   M E ++++ +
Sbjct: 420 VILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELIQQVYTKLLFSMEEKHLQVNI 479

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             D  +  FV A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ I
Sbjct: 480 DVDSSI--FVKANRSRIEQVVVNLLSNAIRYTPEGEKIQVSVITMEDTVKIEIENTGNPI 537

Query: 731 PEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           PE+  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 538 PEESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 590


>gi|229148015|ref|ZP_04276354.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
 gi|228635440|gb|EEK91931.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
          Length = 613

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|167567697|ref|ZP_02360613.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           oklahomensis EO147]
          Length = 1138

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 4/214 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ +V  +S+ELR+PL +I+G+T LL  ++   L   +   V  I  S   LL LV
Sbjct: 676 ANRAKSRYVSGLSHELRTPLNSILGYTQLLLQAR-EELTPMRYNAVRTIHRSGEHLLALV 734

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           + +LD+A ++AG ++LN + + L D +  +   +  +  E  +   V + G+L + V   
Sbjct: 735 DGLLDIARIEAGKLQLNIAKVSLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRTD 794

Query: 685 QRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           Q+ + QI + ++ NA+ F+S G T+ L+ +       F V + G  IP    + +F  F 
Sbjct: 795 QKCMSQILTNLIGNAIRFTSSG-TITLRVSHVLDTLKFEVIDTGPGIPPAEMERLFLPFE 853

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              A      G GLGL+I        GG + + S
Sbjct: 854 RGEAAHAYDHGAGLGLTICRLLTQALGGSLEVDS 887


>gi|83646428|ref|YP_434863.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634471|gb|ABC30438.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 796

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 8/222 (3%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EA+  A++ K+ F+ ++S+E+R+PL  +IG   +L+    G L+ +Q    +    S 
Sbjct: 68  RDEAM-AANKAKSLFIANMSHEIRTPLNGVIG---MLQAMMQGDLSREQKARAKTALTSG 123

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +LL ++ND+LD + ++A  + L      L  LL+     + ++  +  + + +     L
Sbjct: 124 KLLLTVINDLLDFSKLEADKVNLERIPFSLGRLLDSCFPVVCSQASDKGLTLTLTLAAHL 183

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
               + D  RL QI   +LSNA+ F+ +G  V L         +F V + G  IP D  +
Sbjct: 184 PDQIMGDPTRLKQIICNLLSNAVKFTKRGE-VSLYCYPVEDRLVFGVADTGVGIPADRQQ 242

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F  F    ++H  +  G GLGLSI    +   GG + + S
Sbjct: 243 QIFEPFSQADDSHTRRYGGTGLGLSISSRLVEAMGGRLKVRS 284


>gi|30023490|ref|NP_835121.1| two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206970358|ref|ZP_03231311.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218232571|ref|YP_002370240.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228942614|ref|ZP_04105146.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228955716|ref|ZP_04117711.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228975544|ref|ZP_04136096.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982180|ref|ZP_04142469.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|229072930|ref|ZP_04206126.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|229112878|ref|ZP_04242409.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|229130711|ref|ZP_04259664.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|229153623|ref|ZP_04281800.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|229193716|ref|ZP_04320657.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|296505893|ref|YP_003667593.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|29899051|gb|AAP12322.1| Two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206734935|gb|EDZ52104.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218160528|gb|ACK60520.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228589741|gb|EEK47619.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|228629852|gb|EEK86504.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|228652728|gb|EEL08613.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|228670557|gb|EEL25870.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|228710176|gb|EEL62154.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|228777532|gb|EEM25810.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|228784154|gb|EEM32181.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228803944|gb|EEM50568.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228817040|gb|EEM63133.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|296326945|gb|ADH09873.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|326943263|gb|AEA19159.1| two-component sensor kinase yycG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 613

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|315125214|ref|YP_004067217.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013727|gb|ADT67065.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 896

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 129/246 (52%), Gaps = 13/246 (5%)

Query: 551 AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           A++ LT + E  +KADE   IK+ F+ ++S+E+R+P+  I G   L     L   + +Q+
Sbjct: 507 AKQTLTLRQEK-QKADEASAIKSQFLANMSHEIRTPINGIKGMHYL----ALQQQDWQQA 561

Query: 608 Q-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y+E    + ++LL ++ND+LD + ++AG ++L    + L  L  ++   +  ++   +
Sbjct: 562 KGYIEQADGALSVLLRVLNDVLDFSKMEAGKLELMQEPVNLKQLAEDIVGLMQFEVESKS 621

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +K+  D      +  D  RL QI   +L+NA+ F++KG  + LK  + +    FSV +
Sbjct: 622 LSLKLEYDSDAHLILNTDPIRLKQILLNLLNNAVKFTAKG-CITLKIWQSSKMTYFSVND 680

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I     K +F  F    ++   Q  G GLGLSI +  + L GG + + SS+   +T
Sbjct: 681 TGIGISSAAQKQLFKPFSQADSSTSRQYGGTGLGLSICKKLVELMGGAIDLKSSEGHGST 740

Query: 784 INCRIP 789
               +P
Sbjct: 741 FTFSLP 746


>gi|298248438|ref|ZP_06972243.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551097|gb|EFH84963.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 484

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 5/235 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K  F+  VS+EL +PLT +   T L++         + +  +  +     
Sbjct: 250 NSARKELEQHKYDFLNIVSHELGTPLTAVKLQTHLVRKHLEKHSQHEAATELSRVERPVE 309

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ ++LD++ + AG ++     + L +LL EV   +    H +     V+      
Sbjct: 310 QLECLIAELLDVSRIQAGRLEYVRERVDLGELLREV---VDAMQHTSPSHTIVVRGSMQT 366

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S + DR RL Q+FS +LSNAM +S    TV ++ +         V+++G  IP +    +
Sbjct: 367 SLIGDRDRLGQVFSNLLSNAMKYSPDARTVEVELSATEEAVTILVRDHGLGIPREQYNKI 426

Query: 739 FNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF     A      G+G+GLSIV   +  HGG + + S     +T    +P +
Sbjct: 427 FERFYRTDVARLRAIPGLGMGLSIVAEIVKSHGGTIVVDSDVGKGSTFTVTLPRR 481


>gi|254506101|ref|ZP_05118245.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
 gi|219550919|gb|EED27900.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
          Length = 771

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 14/226 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISAS 616
           K +A  KA   K++F+  +S+E+R+P+  ++G    LLKT     L  +Q ++++ +  S
Sbjct: 306 KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKTD----LTEEQRKHLKTLYES 358

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              ++ L+N+ILD + ++ G ++L +    L  ++  +     T   E  ++ KVIS+  
Sbjct: 359 GDHMMTLLNEILDFSKIEQGHLELEHQPFPLESIIGSINSVYFTLCSEKGLQFKVISEVP 418

Query: 677 LGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-DFI-FSVKNNGSSIPE 732
            G  + +D+ RL QI   +L+NA+ F+S+G   V     R NG D++   V++ G  I +
Sbjct: 419 QGRWYRSDKARLRQILFNLLTNAVKFTSRGYVEVYFTEKRANGVDYLHIRVRDTGIGIAK 478

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +  + +F  F        RR  G GLGL+IV+    L  G + ++S
Sbjct: 479 ESQEKIFKPFEQAESSTTRRFGGTGLGLAIVKQLCELMDGDIHLTS 524


>gi|129306901|gb|ABO30413.1| GacS [Pseudomonas sp. P97.30]
          Length = 204

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 14/207 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+E+R+P+  I+GFT LL+ S+L     +Q  Y+  I  S+  LL ++N+I
Sbjct: 2   IKSEFLANMSHEIRTPVNGILGFTHLLQKSEL---TPRQLDYLGTIEKSADSLLGIINEI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQ 685
           LD + ++AG + L+     L DLL +    +A   H   + +   V  D  L S V D  
Sbjct: 59  LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL-SLVGDPL 117

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI + ++SNA+ F+ +G T++ +A       D+     S+++ G  +     +++F 
Sbjct: 118 RLKQILTNLVSNAIKFTREG-TIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQ 176

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFI 765
            F    N+   Q  G GLGL I +  +
Sbjct: 177 AFSQADNSLSRQPGGTGLGLVISKRLV 203


>gi|85860639|ref|YP_462841.1| sensor proteinluxq [Syntrophus aciditrophicus SB]
 gi|85723730|gb|ABC78673.1| sensor proteinLuxQ [Syntrophus aciditrophicus SB]
          Length = 955

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 129/253 (50%), Gaps = 7/253 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D    E AL +  EA   A+  K++F+ ++S+ELR+PL  IIG+++LL+     +  
Sbjct: 417 DISDRKATEVALQQAKEAADAANRSKSAFLANMSHELRTPLNAIIGYSELLQEEAEEAGV 476

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     ++ I ++   LL L+NDILDL+ ++A  ++L   T  +++++  + + IA  + 
Sbjct: 477 NHFISALDRIHSAGKHLLGLINDILDLSKIEASKIELYPETFSVSEMIESIVK-IADPLV 535

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
           + N  I ++   + G  + AD  RL Q    +LSNA  F++ G   +  +     +    
Sbjct: 536 KKNGNILIVKGCETGGEMHADLTRLRQCLFNLLSNAAKFTTSGVITLTVSRTQEAEQEWM 595

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            FS+ + G  +     + +F  F        R+  G GLGL+I  +F  L GG +++ S 
Sbjct: 596 NFSLHDTGIGMTPQQMERLFQTFTQADSSTTRKFGGTGLGLTITRNFCRLMGGDITVESE 655

Query: 778 DEGVTTINCRIPS 790
               +    RIP+
Sbjct: 656 YGKGSLFTIRIPA 668


>gi|75907786|ref|YP_322082.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701511|gb|ABA21187.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1550

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 10/220 (4%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A   K++F+ ++S+E+R+P+  ++G T L+  +    LN +Q  ++E I  S   LL L+
Sbjct: 887  ASHAKSAFLANMSHEIRTPMNAVLGMTGLMLET---LLNQEQRDFMETIRISGDALLTLI 943

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            N+ILDL+ ++AG M L      L+  + EV   +A + H   + I  +    +      D
Sbjct: 944  NEILDLSKLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSKGLEIAALIYRHVPIQLQGD 1003

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
              RL QI   ++ NA+ F+S G  V+   L++       I F+V ++G  I  +    +F
Sbjct: 1004 ASRLRQILMNLIGNAIKFTSFGEVVMRVELRSETPTTAIIHFAVTDSGLGITLEDQHKLF 1063

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              F        R+  G GLGL+I +  + L GG + + S 
Sbjct: 1064 TPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQ 1103


>gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
 gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
          Length = 782

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 121/255 (47%), Gaps = 11/255 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T SV  E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +LL  +   +L
Sbjct: 195 LDITTSVNYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLNDT---TL 251

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  Y   I  S   LL ++ND+LD + ++A  + L+     L   ++E+   +    
Sbjct: 252 SDEQKLYANTIKNSGEALLVIINDVLDYSKIEADKLVLHEEVFDLERCIHEIVMLLQPTA 311

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            +  + I V  D  L + FV D  R+ Q+ + +  NA+ F+++G   +      N +   
Sbjct: 312 RDKGLTILVDYDLFLPTQFVGDPGRIRQVLTNLAGNAVKFTNEGHVTLRVTGISNPEEGT 371

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 +++ G  IP +    VF  F  V +    +  G GLGL+I    I L  G + +
Sbjct: 372 CAVHCMIEDTGIGIPVEKIDHVFGEFNQVEDERNRKFEGTGLGLAISRRLIELMKGEIWV 431

Query: 775 SSSDEGVTTINCRIP 789
            S +   +    RIP
Sbjct: 432 ESDEGKGSCFGFRIP 446


>gi|302784310|ref|XP_002973927.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
 gi|300158259|gb|EFJ24882.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
          Length = 320

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 27/251 (10%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQS 607
           V+A   L    +A   A + K+ F+ ++S+E+R+P+  I+G + L+    LG SL  +Q 
Sbjct: 50  VKANEELQTSKQAAELASQAKSDFLANMSHEIRTPIHGILGMSALV----LGTSLTDEQK 105

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  +S  + +LL+++N ILDL  ++AG  ++   +  L+ +L      +  +   +N+
Sbjct: 106 ENMTTVSECAELLLHIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHILQPRAQAHNL 165

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----------------- 709
           R+    D  +  F V D  +L Q    ++ NA+ F+ +G   +                 
Sbjct: 166 RLSYEIDSAVPEFLVGDSGKLRQCLLNLVGNALKFTPEGEVRVEVSVHRFGMQDDSVLSR 225

Query: 710 LKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           L A++  D  + +  + ++G  I ++  K VF  F        R   G GLGL +V+ F+
Sbjct: 226 LNASQWSDMSEMMLEISDSGIGISKNKLKDVFKPFTQADASISRLYGGTGLGLCVVQRFV 285

Query: 766 NLHGGHVSISS 776
            L GGH+ + S
Sbjct: 286 ELMGGHILVES 296


>gi|300117512|ref|ZP_07055302.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298725347|gb|EFI65999.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 603

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 143/293 (48%), Gaps = 33/293 (11%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----A 551
            +D    +  + DDE   L G++  LS                    VN+ D +     A
Sbjct: 324 NFDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVA 363

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   + Y +
Sbjct: 364 NTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTTYYTD 419

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   +  +  L+ ++L+LA +++G  KL+ +T  + +L+ +V   +   M E ++++ +
Sbjct: 420 VILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELIQQVYTKLLFSMEEKHLQVNI 479

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             D  +  FV A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ I
Sbjct: 480 DVDSSI--FVKANRSRIEQVVVNLLSNAIRYTPEGEKIQVSVITMEDTVKIEIENTGNPI 537

Query: 731 PEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           PE+  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 538 PEESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 590


>gi|291442112|ref|ZP_06581502.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
 gi|291345007|gb|EFE71963.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
          Length = 493

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 12/232 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +     FV  VS+ELR+PL  +   TD+L     G    +  + +  IS  +  L 
Sbjct: 255 LRRLEAQGRRFVADVSHELRTPLAAMSAVTDVLDLEGEG----ETGEALRLISEGTNRLS 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+++++  DAG  +LN   I   DL   V++++A++  +  +  ++   G+L + V
Sbjct: 311 GLVNDLMEISRFDAGAAELNRDEI---DLAESVRRTVASRWWQEQVETRLPGPGELRARV 367

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKNNGSSIPEDMCKSV 738
            D +RL  + + ++ NA+        + +    D       +  V +NG  I E+    +
Sbjct: 368 -DPRRLDVVTANLIGNALRHGEPPVRLTMGVRVDGTGMAWAVIEVTDNGPGIAEEAMPHI 426

Query: 739 FNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF  ++  R +    GLGL+I    + LHGG +  ++   G       +P
Sbjct: 427 FERFYKASTSRARSESSGLGLAITAENVRLHGGRIRAANLPRGGAVFTVELP 478


>gi|75910979|ref|YP_325275.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704704|gb|ABA24380.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 680

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 15/256 (5%)

Query: 546 TDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ +RA+  R  T + EA   A+ +K+ F+  +S+ELR+PLT+++G++ +L+  KL    
Sbjct: 270 SEEIRAQVIREQTARQEA-EAANRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLD--E 326

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              ++ +E I  ++   + L+ DILD++ +  G ++LN S + L  ++    +++     
Sbjct: 327 KATARALEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLTTVVEAALEAVRPLAD 386

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--- 720
             ++ I    D  L     D  RL QI   +L+NA+ F+ K   V ++    +G      
Sbjct: 387 TKSMTINTALDYTLSPVSGDSARLQQIVWNLLTNAIKFTPKEGKVEIRLEGISGGLSDDL 446

Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 V + G  I  +    VF RF        R   G+GLGL+IV   + LH G +  
Sbjct: 447 THAQIQVIDTGIGIEREFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHKGTILA 506

Query: 775 SSSDEGV-TTINCRIP 789
            S   G   T   R P
Sbjct: 507 ESPGVGKGATFTVRFP 522


>gi|42779796|ref|NP_977043.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42735713|gb|AAS39651.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 463

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQS-QYVEYISASSTILLNLVND 626
           ++ F+  V++ELR+PLT + G+ D+ LK +     +SKQ  +Y+  I   S  + NLV D
Sbjct: 235 RSEFLASVAHELRTPLTYVRGYADIALKETT----SSKQRLRYLSIIKDESDYITNLVQD 290

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +  LA ++     +    + L++ L  + + +     E +IR+       L   + D QR
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHNFLTRIAEKVNAIYKEKHIRVSFSCPPTLLVNL-DEQR 349

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
             Q+   IL+NA   S + S + +    ++     ++++ G  IP +    +F+RF  V 
Sbjct: 350 FEQVVVNILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVD 409

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            A      G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 410 KARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLPS 455


>gi|297538157|ref|YP_003673926.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297257504|gb|ADI29349.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 873

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 110/214 (51%), Gaps = 2/214 (0%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+  K+ F+  +S+ELR+PL  I+GF  L++ S   +  + Q + ++ I  +   LL L
Sbjct: 492 KANLAKSDFLSSMSHELRTPLGAILGFAQLIE-SGTPAPTASQKKSIDQILKAGWYLLEL 550

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N++LDLA +++G + L+   ++L D+++E +  I  +     I +             D
Sbjct: 551 INEVLDLALIESGKLALSLEPVLLADVMHECEAMIEPQAQSREINVIFKQPEVPYCVRGD 610

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
           R R+ QI   +LSNA+ ++    TV ++ +    D +  SV++ G+ + ++    +F  F
Sbjct: 611 RTRVKQIVINLLSNAIKYNRVNGTVTVECSITPHDTVRISVQDTGAGLTDEELTQLFQPF 670

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                  +  G G+GL + +   +L  G + + S
Sbjct: 671 NRLGQNTKEEGTGIGLVVCKRLTDLMKGKIGVES 704


>gi|229188857|ref|ZP_04315890.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876]
 gi|228594562|gb|EEK52348.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876]
          Length = 463

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+   SK  + + ++ +Y+  I   S  + NLV D+ 
Sbjct: 235 RSEFLASVAHELRTPLTYVRGYADI--ASKESTPSEQRLRYLSIIKDESDYITNLVQDLF 292

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +    + L+  L  + + +     E  I++       L   + D QR  
Sbjct: 293 SLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAIYKERYIKVSFSCPPTLLVNL-DEQRFE 351

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   IL+NA   S + S + +    ++     ++++ G  IP +    +F+RF  V  A
Sbjct: 352 QVVVNILNNAYRHSKEHSHINISVTEEHKSISITIEDEGEGIPPEDLPHIFDRFYRVDKA 411

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 412 RSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLPS 455


>gi|218506120|ref|ZP_03503998.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Brasil 5]
          Length = 199

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 3/199 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623
           A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N +Q +YV  +  S   LL++
Sbjct: 1   ANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSV 60

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VN +LD++ ++AG  +L      ++  +   +  +A +     + +       LG  VAD
Sbjct: 61  VNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQAKTKGVTLTSRIQRGLGEIVAD 120

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           ++ + QI   ++ NA+ F+  G  V + AA  +G    +V + G  I  D    +   FV
Sbjct: 121 QRAIQQILINLVGNAVKFTEAGGVVSIDAAARDGILKLTVSDTGIGIAADKLALLGQPFV 180

Query: 744 SNAHRGQRR--GVGLGLSI 760
              +   RR  G GLGLS+
Sbjct: 181 QIQNDYTRRFEGTGLGLSL 199


>gi|254416315|ref|ZP_05030069.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176997|gb|EDX72007.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1474

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 19/248 (7%)

Query: 547  DSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            +  R  + L EKN  L +A       +  K+ F+ ++S+ELR+PL  I+G+  +LK    
Sbjct: 970  EQTRISQQLAEKNLHLEQARQEAETANHAKSEFLANMSHELRTPLNGILGYVQVLKREPH 1029

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             +  +KQ Q +  I      LL L+NDILDL+ ++A  M L  S       L  + + + 
Sbjct: 1030 PT--AKQQQGLSIIQQCGEHLLTLLNDILDLSKIEARKMDLCLSEFQFPHFLEGIIEMVR 1087

Query: 660  TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--------L 710
             +  E  I         L   V  D +RL Q+   +L NA+ F+ +GS            
Sbjct: 1088 IRADEKAIAFHYQPLSPLPKIVRGDEKRLRQVLINLLGNAIKFTDQGSITFKVGYTSAQA 1147

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHG 769
             A   +    F +++ G  I  +    +F  F     R  Q  G GLGL+I +  + L G
Sbjct: 1148 PATEASNTMRFQIEDTGIGIAAEQLNDIFLPFHQIGDRNRQVEGTGLGLAISQRLVQLLG 1207

Query: 770  GHVSISSS 777
            G + + S+
Sbjct: 1208 GELHVESN 1215


>gi|86750927|ref|YP_487423.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573955|gb|ABD08512.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1426

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 10/234 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSK 605
           DS   ER    + EAL + D  K +F  +VS+E R+PLT ++    D+L  +   +L + 
Sbjct: 341 DSYEEER---RRAEALAEIDRAKTAFFSNVSHEFRTPLTLMLSPLEDVLNQA---TLPND 394

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   +     +   LL LVN +LD A ++AG +  +++ + L+    E+  +  + + + 
Sbjct: 395 QQALLGIAHRNGLRLLKLVNTLLDFARIEAGRVTAHFTPVDLSSFTAELASNFRSAIDKA 454

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVK 724
            +R+ + +         DR    ++   +LSNA  F+ +G   V L+   D       V+
Sbjct: 455 GLRLTIDAPPLPQPVHVDRDMWEKVVLNLLSNAFKFTFEGEIAVTLRPTPDGRSAEIVVR 514

Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
           + G+ IP D    +F RF   +  RG+   G G+GL++V+  + LH G + + S
Sbjct: 515 DTGTGIPPDEIPHLFERFRRIDGARGRSIEGSGIGLALVQELVKLHSGSIGVES 568



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 156/386 (40%), Gaps = 67/386 (17%)

Query: 429  YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH--IRNIAAT 486
            Y  L+ V G  ID     ++  G     +L +   + LW T     +PG    IR+  A 
Sbjct: 936  YQALLDVDGAVIDANLTSLSGIG----ARLEDVVGQPLWDTPWFAGTPGMQQTIRDDVAA 991

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-----T 541
                             + +    R+ +Q  L +      ++ + P+ +AQ  +      
Sbjct: 992  -----------------VAAGQSVRREMQLDLPVGGWRWFDFQMRPVHDAQGQIIAIVPE 1034

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIK--NSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
             V +T+  +AE       EA R+A +++        V+++  + LT I    DLL+  +L
Sbjct: 1035 AVEITERRKAE-------EAFRQAQKMEAIGQLTGGVAHDFNNLLTVIRSSADLLRRREL 1087

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA-------GIMKLNYSTIVLNDLLN 652
                 +  +YV+ IS ++     L   +L  A   A          ++  +  +L   L 
Sbjct: 1088 PP--ERMRRYVDAISDTADRAAKLTGQLLTFARRHAQNRQVFDAAGQIEQTAEMLRTALG 1145

Query: 653  EVKQSIATKMHENNIRIKVIS---DGKLGSFVA------DRQRLLQIFSKILSNAMDFSS 703
              + S A K+ +  + ++  +   D  + + VA      D Q  L+I  ++ + A     
Sbjct: 1146 S-RASFALKIDQRPLAVEADANQFDAAMVNLVANARDAMDGQGALEI--RVAAAAPTAQE 1202

Query: 704  KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
              + V+   A        S+ + G+ IP+D    +F  F +    G  RG GLGLS V  
Sbjct: 1203 TAAGVMDVVA-------VSIADTGAGIPQDQIDRIFEPFFTTKDVG--RGTGLGLSQVYG 1253

Query: 764  FINLHGGHVSISSSDEGVTTINCRIP 789
            F+   GG+V++ S+    TTI  R+P
Sbjct: 1254 FVKQSGGNVTVESALGCGTTITLRLP 1279


>gi|66816785|ref|XP_642392.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74841827|sp|Q86CZ2|DHKK_DICDI RecName: Full=Hybrid signal transduction histidine kinase K; AltName:
            Full=Protein sombrero
 gi|30230651|gb|AAP20874.1| sombrero SmbA [Dictyostelium discoideum]
 gi|60470136|gb|EAL68116.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1213

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            LT   +A  +A + +  F+  +S+E+R+PL  +IG   LL+ S   +L  ++    + + 
Sbjct: 802  LTIAKDAAIEAYQARQEFLATMSHEIRTPLNGLIGMATLLRDSH--NLPPEEKTMAKAVK 859

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +   ILL LVNDILDL+ ++A  M L +    + +L  ++   ++ + +E NI +   +S
Sbjct: 860  SCGDILLRLVNDILDLSKLEANQMGLEHIPFRMRELTQQICHVLSGQANEKNIHLSCEVS 919

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI----------FS 722
            D      + D  R+LQI   +  NA+ F+  G   +I+    +  + +          F 
Sbjct: 920  DKIPSILLGDSGRILQILMNLTGNALKFTQSGYVKIIIDLIEEESELVSLKKGEYNISFR 979

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            VK+ G  +P +  + +F  FV       R+  G GLGL +    + L  G + +
Sbjct: 980  VKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVRLMKGEIGV 1033


>gi|329114863|ref|ZP_08243619.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001]
 gi|326695760|gb|EGE47445.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001]
          Length = 946

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 129/256 (50%), Gaps = 8/256 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R ++ L +  E    A+  K+ F+  VS+E+R+PL +I+G+  LL+ 
Sbjct: 645 QTRLLMREIHAHKRTDQELKKAKERAESANLSKSRFMVGVSHEIRTPLNSIMGYAYLLEN 704

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L     KQ++ ++ I  S+  L  L+  + D++ ++AG M++    I   + L  + +
Sbjct: 705 KMLTP--EKQNEGLKVIQRSTEHLSGLIEGLFDISKIEAGRMEILREKINFREFLKHLTE 762

Query: 657 SIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  ++++  +  I+ I D      + D++RL QI   +LSNA+ F+  GS     + R 
Sbjct: 763 MLRFQVNQKKLLFIEHIPDDLPEYVMTDQRRLRQILINLLSNAIKFTPSGSVSF--SVRW 820

Query: 716 NGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           N +  IF +++ G  IP    + +   F  ++H   +  +G GLGL+I    + + GG +
Sbjct: 821 NMEIAIFEIQDTGIGIPATDIERIHEPFQRSSHPASQSIQGTGLGLTITRLLVQILGGEL 880

Query: 773 SISSSDEGVTTINCRI 788
           +I S     TT   R+
Sbjct: 881 TIKSQVGLGTTCRVRL 896


>gi|163788048|ref|ZP_02182494.1| sensor histidine kinase [Flavobacteriales bacterium ALC-1]
 gi|159876368|gb|EDP70426.1| sensor histidine kinase [Flavobacteriales bacterium ALC-1]
          Length = 407

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 123/241 (51%), Gaps = 4/241 (1%)

Query: 554 ALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  E  +AL+K    +E+K  F+  VS+E ++PL+ I+  T LL   KL     K+ +++
Sbjct: 165 AEEEAKDALQKEIELNELKTKFLSLVSHEFKTPLSGILTSTMLLSKYKLAEQQGKRDKHI 224

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + IS     L N++ND L +  ++ G ++    T  L+ ++NEV  + A  + ++  +I 
Sbjct: 225 KTISDKVHYLNNILNDFLSVEKLEKGKVQYKPRTFKLSKVVNEVIYN-ANMLLKDGQQIN 283

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              D    S   D + +    S ++ NA+ +SS+ + + +   +D    +F VK+NG  I
Sbjct: 284 YPKDIDDMSLHQDEKIVELALSNLVHNAIKYSSENTIIDIDIEQDKLTTVFRVKDNGIGI 343

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           P+   K++FNR+    +    +G G+GL+IV+  +    G +   S  +  T     +P+
Sbjct: 344 PKKDQKNIFNRYFRAENALLTQGTGIGLNIVKDHLENLKGKIYFESEPQKQTIFTIELPN 403

Query: 791 K 791
           K
Sbjct: 404 K 404


>gi|94499610|ref|ZP_01306147.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
 gi|94428364|gb|EAT13337.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
          Length = 1120

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 137/267 (51%), Gaps = 19/267 (7%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           P  + ++ + ++ D    E +L + K +A   AD+ K+ F+ ++S+E+R+PL  ++G ++
Sbjct: 725 PKKRLLVQWHDIKDMYAREESLRQAKADAEELADQ-KSMFLANMSHEIRTPLNALVGLSN 783

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  ++    + K   Y+  I+ +S  L ++V+DILD + +DA  + L+   +  ++ L 
Sbjct: 784 LLVANE---THVKAQDYMRSINKASIHLKSIVDDILDFSKIDADRIDLDEIAVNFDEFLC 840

Query: 653 EVKQSIATKMHENNIRIKVIS---DGKLGSFVA---DRQRLLQIFSKILSNAMDFSSKGS 706
           E+K      +HE + R K +    D +L + +A   D  R  QI + ++SNA+ F+ KG 
Sbjct: 841 EIK-----SLHEQSAREKGLHFEVDNRLDNDIAIVIDPVRYRQIINNLVSNAIKFTEKGE 895

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
            VI+   +     + SV + G  + E+   ++F+ F        R+  G GLGLSI +  
Sbjct: 896 -VIVVTKKQQESLLLSVCDTGCGLDENQLSNLFDPFSQADITTTRKYGGTGLGLSICKGL 954

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
                G +S+SS     +     IP K
Sbjct: 955 AERMSGSISVSSELGKGSCFYVSIPYK 981


>gi|326790775|ref|YP_004308596.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326541539|gb|ADZ83398.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 484

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L K ++++   + +VS++LR+PLT I G+ +L++   L + N+ ++  V+ I   +  L 
Sbjct: 258 LTKTEKLRRELIANVSHDLRTPLTLITGYAELMR--DLPTENTPEN--VQVIVDEAKRLT 313

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LDL+ + AG  +L   T  L   +NE+     T   +    I  I D ++    
Sbjct: 314 QLVNDMLDLSKLQAGTSQLEKVTFNLTKQINELLLRYNTLTAQEGYTIDFIYDEEIW-VN 372

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  +L Q+   +++NA++++     VI+K    N      V + G  I E+    ++ R
Sbjct: 373 GDELKLSQVIYNLINNAINYTGSDKHVIVKQHVTNDQVRIEVIDTGEGISEEYLPYIWER 432

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           +  V   H+    G GLGLSIV++ ++ H  H  ++S+  EG T
Sbjct: 433 YYKVDKTHKRATVGTGLGLSIVKTILDAHEAHYGVTSNIGEGST 476


>gi|296332102|ref|ZP_06874566.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675503|ref|YP_003867175.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150873|gb|EFG91758.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413747|gb|ADM38866.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 579

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 7/218 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K ++++  FV +VS+EL++P+T+I GFT+ L     G++  K+  S+++  I   S  L
Sbjct: 345 KKLEQMRKDFVANVSHELKTPITSIKGFTETLLD---GAMEDKEALSEFLSIILKESERL 401

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV D+LDL+ ++     L+  T     +L E++  +  K  E  I +++         
Sbjct: 402 QSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLQLNLPKDPLYV 461

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+F  +++NA+ ++ +G +V +       D    V ++G  I ++    +F 
Sbjct: 462 SGDPYRLKQVFLNLVNNALTYTPEGGSVAINVTPREKDIQIEVADSGIGIQKEEIPRIFE 521

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF  V         G GLGL+IV+  I  H G + + S
Sbjct: 522 RFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVKS 559


>gi|302381457|ref|YP_003817280.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192085|gb|ADK99656.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
          Length = 535

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 7/213 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+PL  ++G   LL   KL     +   YV+ I  S   LL L+ D L
Sbjct: 161 KSEFLAVMSHEIRTPLNGVLGVAGLLD-RKL--QQEELRPYVQTILDSGQTLLRLLTDAL 217

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRL 687
           D++   AGI+ L  + + ++ L+ ++      +  E  +R+ V+SD     + V D  R+
Sbjct: 218 DMSRASAGILTLEPAPLHIDTLVKDLDALWRPRAEEKGLRLSVVSDTTGHDWVVGDGMRI 277

Query: 688 LQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVS 744
            Q+ + ++ NA+ F+++G  V  L   R++G      +V ++G  IP     ++F  F +
Sbjct: 278 KQLLNNLIGNALKFTAEGEVVATLTCRREDGAVRIDGTVDDSGPGIPAANAATIFEPFNT 337

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                +  G GLGL+I    +   GG + +S S
Sbjct: 338 GQAGREGAGAGLGLAICRQIVERMGGSIGVSRS 370


>gi|256423414|ref|YP_003124067.1| signal transduction histidine kinase with CheB and CheR activity
            [Chitinophaga pinensis DSM 2588]
 gi|256038322|gb|ACU61866.1| signal transduction histidine kinase with CheB and CheR activity
            [Chitinophaga pinensis DSM 2588]
          Length = 1274

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 145/311 (46%), Gaps = 21/311 (6%)

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            C  +   + G  +   +   F   R   Q  LE+ +      SII       +  +    
Sbjct: 978  CWSFPVRTIGGPILGTLAIYFRQPRSPQQRELEMAAIITHSASII-------ISRYNEAV 1030

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +  +AE AL    + L+   +I+  F+   S+EL++P+T++  + ++++     + N + 
Sbjct: 1031 ERAQAEEALRLSEQRLKNLLKIREEFISVASHELKTPITSMKVYAEIVEERMAETGNHED 1090

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKM 662
             + +  ++     L  L+N +LD  T+  G +K+N++ +    V+ + L +++++   K 
Sbjct: 1091 GELISRLNEQIDRLTVLINLLLDTTTISEGKLKMNFTDVDIKKVVAEKLGDIQRAGTHKF 1150

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
                  + +IS        AD +R+ Q+ + +LSNA+ +S  GSTV +   ++      S
Sbjct: 1151 ELQTEELPLIS--------ADAERIGQVVTNLLSNAIKYSPAGSTVRIAVRKEKERIQVS 1202

Query: 723  VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  IP+   + +F+RF  V+  +     G+GLGL I    I  H G + + S +  
Sbjct: 1203 VQDQGYGIPKAHQQKIFDRFYRVTTDNFDTFPGMGLGLYISAQIIQGHHGAIDVESEEGK 1262

Query: 781  VTTINCRIPSK 791
             +  +  +P K
Sbjct: 1263 GSNFSFTLPIK 1273


>gi|222082058|ref|YP_002541423.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221726737|gb|ACM29826.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 949

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 18/251 (7%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N   +LT  N T  VR   A         +A+  K+ F+ ++S+E+R+P+  I+GF+ LL
Sbjct: 174 NMGHVLTVQNETLEVRTREA--------EQANAAKSLFLANMSHEIRTPMNAILGFSHLL 225

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++L    ++Q  YV  I  +S  LL+L+ DILD + ++AG M L  ++     ++   
Sbjct: 226 GRTEL---TARQHDYVTKIRGASDRLLSLLKDILDFSKIEAGKMALEKASFDPRAMIERT 282

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +    K  E  I I    D  + + +  D  RL Q+   ++SNA+ F+S G   +    
Sbjct: 283 MELSTLKAQEKGIAIGWQVDPAIPAMLRGDELRLSQVVLNLVSNAIKFTSSGEVTLKLNL 342

Query: 714 RDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           R++ D        V++ G  +       +F+ F        RR  G GLGL+I    + L
Sbjct: 343 REHQDSRCVIEGVVRDTGLGMSSGQVARLFDSFTQADSSTTRRFGGTGLGLAISRQLVAL 402

Query: 768 HGGHVSISSSD 778
             G +S+ S +
Sbjct: 403 MDGGISVESKE 413


>gi|212695544|ref|ZP_03303672.1| hypothetical protein ANHYDRO_00061 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677422|gb|EEB37029.1| hypothetical protein ANHYDRO_00061 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 348

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 121/233 (51%), Gaps = 5/233 (2%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L+K +   N  + +++++LR+PLT+IIG+  +L   K    N ++ +Y+  +  ++  L
Sbjct: 119 TLKKRENEDNDLITYLAHDLRTPLTSIIGYLSMLDEMK-DLPNKQREKYIRQLLETALGL 177

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +L+N   ++A ++ G   ++   I L   L ++K  +   M ENN +I + S+G +   
Sbjct: 178 EDLINQFFEIARLNNGEFSIHKEKIDLEYFLIQLKDELYPMMKENNHKINISSEGSIVVN 237

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V D  ++ +    IL NA+ +S   + + +K  +     I  + N   ++ E   +++FN
Sbjct: 238 V-DPNKMKRALENILKNAILYSYANTEIKVKIYQTYKCVILKIINKADTLEEAQIRNMFN 296

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  ++ A   ++ G GLGL I +  I LH G + + S +  V  I  R+ +K
Sbjct: 297 KFTRLNLARNSKKVGCGLGLPIAKEIIELHEGKIEVESFNNEVIVI-VRLKNK 348


>gi|183220873|ref|YP_001838869.1| putative sensory transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910970|ref|YP_001962525.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775646|gb|ABZ93947.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779295|gb|ABZ97593.1| Putative sensory transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 914

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 28/288 (9%)

Query: 523 DSVLEYSIIPLP----NAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           D V+++ I P          +L F  ++T+S   +  L +  E    A   K+ F+ ++S
Sbjct: 475 DQVIQWEIRPWTLLSGGIGGILMFTRDITESYETKLELKKAKELAENAYNAKSEFLANMS 534

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  IIG++DLL  +    +++  ++Y + +  S+  LL++VNDILD +  +AG 
Sbjct: 535 HEIRTPLNGIIGYSDLLAET---LVDTSFNEYAQIVKQSAHTLLSIVNDILDFSKAEAGK 591

Query: 638 MKLNYSTIVLNDLLNEVKQSIATK-----MHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++L     V NDL N + ++I        +H  +IR+  I +      + D  RL Q+  
Sbjct: 592 LQL---AEVPNDLKNLILEAIKIMDIQAIVHGLDIRLH-IDESIPNVLMFDSNRLRQVML 647

Query: 693 KILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            ++ NA+ F+  G      T +  A +       SVK+ G  I ++  K +F+ F     
Sbjct: 648 NLIGNAIKFTETGFIECRLTRLESAIKQEVKVRISVKDTGIGIAKENQKKIFDSFTQEDF 707

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISS----SDEGVTTINCRIP 789
              R+  G GLGL+I    + L    + + S      E    I  RIP
Sbjct: 708 STTRKFGGTGLGLAICRQLLQLMKSELKLKSEVGQGSEFFFEIPFRIP 755


>gi|188580981|ref|YP_001924426.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179344479|gb|ACB79891.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 1120

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 15/233 (6%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K+ F+  +S+E+R+PL  I+G+ DLL        + +  + +E I  S  +LL +
Sbjct: 585 RASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRP--ERDPEDQRRLELIRVSGEVLLTV 642

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVA 682
           VND+LD++ ++AG + L+     L  L+ +    I     ++ + ++   D  L  S + 
Sbjct: 643 VNDVLDVSKIEAGQLALDPLPFALGKLIEDTVAIIRGSALKSALTVEARIDRNLPASVIG 702

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARD-----NGDFIFSVKNNGSSIPED 733
           D  RL Q+   +L+NA+ F+  GS  +      + RD          F +++ G  I   
Sbjct: 703 DANRLRQVLFNLLNNAVKFTPAGSVTLTVRYEGSVRDAEGGRREALRFEIRDTGIGIAPS 762

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
               +F  F        RR  G GLGL+I +  + + GG + + S  EGV +I
Sbjct: 763 QQHRLFKPFSQVDGSISRRFGGSGLGLAICQRLVTMMGGAIGVESV-EGVGSI 814


>gi|108760079|ref|YP_635068.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463959|gb|ABF89144.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 588

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 2/216 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           R+A   +   +  VS++L++PL  + +G   LL+ +         ++    I  ++  + 
Sbjct: 341 RRAARAREDLLAVVSHDLKNPLGVVQLGAALLLRGAGAKPGGESVAKQATRIQDATERMS 400

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+LD   ++AG + L +    +  LL E   SI        +R+ V          
Sbjct: 401 RLISDLLDWGRLEAGGLPLEWGEHGVVGLLTEALDSIRPLAEAKRLRLSVEFPAAGVRVR 460

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D+ R+LQ+   +L NA+ F++ G  ++L A    G+    V++ GS I  D    +F+R
Sbjct: 461 CDKVRVLQVLGNLLGNAVKFTTAGGDLMLGARARGGEVSVHVRDTGSGITPDALPHIFDR 520

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +   A     RG GLGL+I +  +  HGG +   S+
Sbjct: 521 YW-QARDAASRGTGLGLAIAKGLVEAHGGGIQAEST 555


>gi|90022761|ref|YP_528588.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952361|gb|ABD82376.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 861

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 12/236 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           VR    L +KNE L +A + K+ F+ ++S+E+R+P+  +IG  D+   + L   + ++ +
Sbjct: 179 VRLRHRLKQKNEELSEALKAKSEFLANMSHEIRTPMNGVIGMLDV---ALLSETSPEKHR 235

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+     S+  LL ++NDILD + V+AG ++L      ++DL++EV  + +    +N++ 
Sbjct: 236 YLSVARNSAQSLLGIINDILDFSKVEAGKLELEAIDTDIDDLVHEVLVNFSGLAEQNDVE 295

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NG--DFIFS 722
           +       +   V  D  R+ QI + ++ NA+ F+  G  V++KA  +   +G     F 
Sbjct: 296 LIADISPTISHLVKCDPGRIKQILNNLVGNALKFTPHGE-VLVKARAEKLVSGRIQLHFL 354

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           V++ G  I     K +F+ F        R+  G GLGLSI +       G +S+ S
Sbjct: 355 VRDTGIGIAAQNQKHLFDSFTQADTSTTRKYGGTGLGLSIAKRLCETMNGAISLES 410


>gi|331269772|ref|YP_004396264.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329126322|gb|AEB76267.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 652

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 3/229 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+ L+   ++K+ F   +S+ELR+PLT I     L +      +     + +  +  +  
Sbjct: 389 NKELQNISKMKDEFFNMISHELRTPLTIINSSVQLARDIYKEEITRNIGRVLLRVDQNCR 448

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+N+ILD++  +AG ++L YS   +  +   +  S++       I++   ++ +  
Sbjct: 449 RLLKLINNILDISKAEAGFLQLQYSDFDIVVITENIVSSVSIYAKSRGIQLIFDTNEEEK 508

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D+ +  +I   +LSNA+ F+ KG  + +    +N      VK+ G  I E+  K++
Sbjct: 509 LVALDKDKYEKIILNLLSNAIKFTPKGRKIYVTTTVENNKVKIKVKDQGIGIEEENLKTI 568

Query: 739 FNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           F+RF+   N+     +G GLGL++V++ + L GG + +SS  +EG   I
Sbjct: 569 FDRFIQIRNSTTNCVQGTGLGLALVKNLVELMGGSIKVSSKLNEGTEFI 617


>gi|327402692|ref|YP_004343530.1| integral membrane sensor signal transduction histidine kinase
           [Fluviicola taffensis DSM 16823]
 gi|327318200|gb|AEA42692.1| integral membrane sensor signal transduction histidine kinase
           [Fluviicola taffensis DSM 16823]
          Length = 889

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 122/243 (50%), Gaps = 3/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   AL   N  +++ D +K+ F+  V++E+R+PLT+I   ++LL   +       + ++
Sbjct: 641 RVSEALKLANFRMKENDLLKDEFLYTVTHEMRTPLTSIKALSELLSDEEDAMPEEIKKEF 700

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   S  +  L++ +LDL   ++G  +L    + +++L+    QS+     +NNI++
Sbjct: 701 LNTILKESNRMTRLISQVLDLENFESGKHQLIIDKVDISELMQHCLQSLDGVFKQNNIQV 760

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGS 728
            +  +  L    AD  R+ Q+   +L+NA  +  K S  V +  +R        + +NG 
Sbjct: 761 CIDIEENLPDLEADHDRITQVVLNLLANAAKYCDKESGKVWVDISRIGSLLQVKIADNGP 820

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  ++ + +F +F    ++  R  +G GLGL+I +  I LH G + ++++D   +    
Sbjct: 821 GVIPELREIIFEKFFQAKNQTMRKPKGSGLGLAISKKIIQLHEGKIGVNTNDPEGSVFTF 880

Query: 787 RIP 789
            IP
Sbjct: 881 SIP 883


>gi|318604060|emb|CBY25558.1| aerobic respiration control sensor protein arcB [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 778

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 121/233 (51%), Gaps = 14/233 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +S+Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DSEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTSFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           K I + +L      + D  RL QI   ++ NA+ F+ +G  V+      N   IF V+++
Sbjct: 379 KFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQGEIVVRVRRESNDRLIFEVEDS 438

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           G  IPED    +F  +  V +++ G+   G G+GL++ +      GG +++ S
Sbjct: 439 GMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKS 491


>gi|301061431|ref|ZP_07202201.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300444470|gb|EFK08465.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 250

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 6/234 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTD--LLKTSKLGSLNSKQSQYVEYISASS 617
           + L+++D+ +   V +VS++LR+PL  + G+ +  LLK   L +   K+  Y+E      
Sbjct: 10  DQLKESDDTRREMVANVSHDLRTPLATLRGYVETLLLKEDDLST--EKRRYYLEIAIKHC 67

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  LV+++++LA +++   ++   +  L +L ++V Q    +  E  I +K   + ++
Sbjct: 68  ERLSKLVDELMELAKLESLETEVQKESFHLGELAHDVIQKFRLRAEEKEITLKTDIEKEM 127

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D   + ++   +L NA++++ +G TV L    +N +   +V + G+ IPE     
Sbjct: 128 PLTHGDIGLIERVLENLLENAINYTPEGGTVGLSIKFENHEISVAVSDTGTGIPESEIPH 187

Query: 738 VFNRFVS-NAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF   N  RGQ  G  GLGL+I +  + LH   + + S     TT++  +P
Sbjct: 188 IFERFYRMNRDRGQGDGHHGLGLAIAKRILELHHRSIHVQSLLHNGTTLSFNLP 241


>gi|270289945|ref|ZP_06196171.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304385804|ref|ZP_07368148.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
 gi|270281482|gb|EFA27314.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304328308|gb|EFL95530.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
          Length = 615

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 114/234 (48%), Gaps = 8/234 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K D+ +  FV +VS+ELR+PLT++  + + L        N   + +++     +  ++ 
Sbjct: 372 QKIDQDRKRFVSNVSHELRTPLTSMKSYIEALVDGAWKDPNVAPN-FLKVTQEETDRMMR 430

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-----ENNIRIKVISDGKL 677
           ++ND+L+L+ +D G  +L+   + LN+L N +       +      E N  IK     + 
Sbjct: 431 MINDLLNLSRMDLGTARLDKEYVNLNELFNHILDRFDMILKNGEKSEKNYTIKRDFTRRD 490

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D  ++ Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP++    
Sbjct: 491 IWVEVDTDKIQQVLDNIMNNAIKYSPDGGVITCRLVETHNHVIMSITDQGLGIPKEAISH 550

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           VF+RF  V  A    + G GLGL+I +  + +HGG + + S +   +T    +P
Sbjct: 551 VFDRFYRVDKARSRAQGGTGLGLAISKEVVQMHGGRIWVESREGEGSTFYISLP 604


>gi|237721045|ref|ZP_04551526.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449880|gb|EEO55671.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 628

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 132/248 (53%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++     
Sbjct: 383 DITELKRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENA--- 439

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++  Y   I  ++ +LLNL+ND++DL+ +++G ++L    + L +LL+E   S+A   H
Sbjct: 440 AEKELYNSLIGHNNKLLLNLINDVIDLSKIESGYLELRLDWVNLTELLDE---SVAEYAH 496

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++++++      +   DR R+ QI S  LSNA+  ++ G   +     D+     
Sbjct: 497 QVPSGVELLTNYPAHDSLVELDRLRIKQILSNFLSNALKNTTTGHVEVFYEV-DHQSVRI 555

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  IP++M + +F RF       Q  G GLGL I +  +    G + + S     
Sbjct: 556 GVKDTGRGIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIG 613

Query: 782 TTINCRIP 789
           TT    +P
Sbjct: 614 TTFIIELP 621


>gi|229003521|ref|ZP_04161339.1| hypothetical protein bmyco0002_4940 [Bacillus mycoides Rock1-4]
 gi|228757759|gb|EEM06986.1| hypothetical protein bmyco0002_4940 [Bacillus mycoides Rock1-4]
          Length = 403

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 3/233 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            +R + E +  FV   S+ELR+PL  I   TD+L  S   ++  K    +  IS     L
Sbjct: 171 PIRNSWEKQQQFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAID-ISTISKECRRL 229

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV ++L LA  D+  +++      L++LL EV             ++ +  + K+ SF
Sbjct: 230 SKLVANLLLLARSDSNQIEMYKKEFALDELLTEVVDPYTEIAAYQEKKMTLEIESKV-SF 288

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + DR+R+ Q+   +L NAM ++  G T+ +   + N      VK+NG  I E+    +F+
Sbjct: 289 IGDRERIHQMVVILLDNAMKYTDVGGTIQVACMQTNSSITIQVKDNGIGIKEEEIPKLFD 348

Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF   +  R +  G GLGLSI    +  H G + + S     T     +P  +
Sbjct: 349 RFYQGDKARTKAEGAGLGLSIASWIVEKHHGKIKVESKMNEGTCFEVILPKNQ 401


>gi|307155195|ref|YP_003890579.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985423|gb|ADN17304.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 404

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 4/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R +  +NE L++   +K+ F+  +S+ELR+P+  I+GF+ +L       L   Q+  
Sbjct: 158 RQRRQIELQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRKYPEPLTCAQTDL 217

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  +S  LL L+ND+L  + ++AG + L+ + + L  L     + + +     N+ +
Sbjct: 218 VQRIFDNSKNLLTLLNDVLHFSKIEAGKLLLHPTELDLKQLTVLTTEELRSLAVSKNLSL 277

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGS 728
           ++  + +    V D+  L +I   +LSNA+ F+  G  V +       D++  +VK+ G 
Sbjct: 278 QIKVELENPQIVNDQSCLRRILVNLLSNAIKFTESGG-VWVNVWEMRPDWLAIAVKDTGI 336

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+  + +F  F        R+  G GLGL+I ES   +  G +S++S     +    
Sbjct: 337 GIAEEQLEHIFEVFRQADQTLTRKYGGTGLGLAISESLTKMMQGKISVTSELGKGSIFQI 396

Query: 787 RIPSK 791
             P K
Sbjct: 397 EFPRK 401


>gi|167629252|ref|YP_001679751.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591992|gb|ABZ83740.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 662

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 26/248 (10%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           + AL    E    A+  K++F+ ++S+E+R+P+  IIG  DLL  + L   N +Q ++V 
Sbjct: 353 QTALQLAKEEADVANRAKSAFLANMSHEIRTPMNAIIGIADLLWETPL---NEEQKKFVH 409

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               +   LL L+NDILDL+ +++G   L      L++L+N+     +T+  E  + + V
Sbjct: 410 IFRDAGNNLLALINDILDLSKIESGKQVLQPVEFYLDNLVNDTIALFSTRAQEKGLELTV 469

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDF-----------------SSKGSTVILKAA 713
            + D      + D   L Q+   +L NA+ F                 S  G+T      
Sbjct: 470 RLPDDIPRLLLGDVGALRQVLFNLLGNAIKFTETGAVSLHIEVADPVVSPSGATADPNPP 529

Query: 714 RDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
              G  +   FSV + G  IP +    +F+ F        RR  G GLGL+I +  + L 
Sbjct: 530 HFPGQPVHLRFSVIDTGLGIPPEWQDRIFDSFTQVDASLTRRFGGTGLGLAICKRLVELM 589

Query: 769 GGHVSISS 776
           GG + + S
Sbjct: 590 GGQIWVDS 597


>gi|153870385|ref|ZP_01999797.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152073147|gb|EDN70201.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 855

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 22/247 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L++  ++K+ F+ + S+ELR+PL  IIG  + L     G L+ +    +  I 
Sbjct: 230 LKAKNAELKRLSQLKDEFLANTSHELRTPLQGIIGIAESLIDGASGQLSQQTCSELSIII 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   L NLVNDILD +      ++L    + + ++ + V +     +   ++++     
Sbjct: 290 ASGRRLSNLVNDILDFSKHKHKKIELQTKPVNMREITDIVLRFCQPLIGHKDLQLINNIP 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------- 718
             L    AD  R+ QI   ++SNA+ F+ KG   I     DN                  
Sbjct: 350 SDLPPANADENRVQQILHNLVSNAIKFTEKGVVKISAQLSDNASLSIENIQPTEKNQSTK 409

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                    +V + G  IP D  + +F+ F          G GLGL+I +  + LHGG +
Sbjct: 410 LPPDKCLTITVSDTGWGIPSDKTQKIFDFFEQLNSNSTINGTGLGLAITKQLVELHGGKI 469

Query: 773 SISSSDE 779
            + S+++
Sbjct: 470 WLESTED 476


>gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106]
 gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106]
          Length = 1361

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 36/270 (13%)

Query: 538 TMLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            ++ F ++T   +AE         L  KNEAL + D++K+ F+ + S+ELR+PL  +IG 
Sbjct: 556 AVVVFEDITQRKQAEVERHNFTAQLKLKNEALERLDKLKDEFLANTSHELRTPLNGMIGI 615

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +     G+L+  Q + +  I+ S   L  LVNDILD + +    ++L      L ++
Sbjct: 616 AESMLEGATGTLSELQRKNLIMIAHSGHRLSTLVNDILDFSKLRHNTIRLQVKPTGLREI 675

Query: 651 LNEVKQSIATKMHENNIR---IKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
                  I   ++++ +R   +++I+D    L    AD  RL QI   ++ NA+ F+ +G
Sbjct: 676 -----TEIVLTLNQSLVRNKDLQLINDISPDLPLVKADENRLQQILHNLVGNAVKFTERG 730

Query: 706 STVI-----------------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           S  +                 +     N     +V + G  IP +    +F  F     +
Sbjct: 731 SITVSAQVISWDENSDNHQPKVDQKATNSQIAVTVSDTGIGIPANKINRIFESFEQADGS 790

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              Q  G GLGL++ +  + LHGG + + S
Sbjct: 791 TARQFSGTGLGLAVTKQLVELHGGKIWVES 820


>gi|222053139|ref|YP_002535501.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
 gi|221562428|gb|ACM18400.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
          Length = 478

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 114/230 (49%), Gaps = 6/230 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ +++K+  +  VS+E+R+PLT ++GFT+ L  +++    S+   Y+  I   +  L  
Sbjct: 251 KEIEQMKDEMISAVSHEMRTPLTAMLGFTEYLLENEVDP--SQLKNYLNTIYKETARLKE 308

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ + LDL  ++A +       + +  L+ +     A  +  ++ R+ V     +     
Sbjct: 309 LIGNFLDLQQINARMTTYRMHPLDVCLLIKDAAGLFA--LDYDSGRLVVQCPRNIPPLQG 366

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+ + ++SN + +S   + V + A  +    +  VK+ G  IP ++ + +F +F
Sbjct: 367 DEARLHQVLTNLISNGLKYSQAPARVTVGAEAEGDQVVVWVKDEGCGIPPELQEKIFEKF 426

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + N  R    G GLGL++V   +  HGG V ++S     +T    +P+
Sbjct: 427 YRIDNTDRRHIGGTGLGLALVREIVAAHGGRVWVTSEVGRGSTFFISLPT 476


>gi|16127218|ref|NP_421782.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221236019|ref|YP_002518456.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|13424622|gb|AAK24950.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220965192|gb|ACL96548.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 574

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA E K++F+  +S+E+R+P+  ++  TD L  + LG   ++Q+  ++    S   L+ L
Sbjct: 194 KASEAKSAFLAMISHEIRTPMNGVLAMTDALSRADLGPDQARQTALLKR---SGEDLMTL 250

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +ND+LD++ ++AG +++      L +LL +++        +  + + + I+ G     + 
Sbjct: 251 LNDVLDISRIEAGKLEIECQPFDLPELLGDLRALWTPAATDKGLDLVLTIAPGLDAYRLG 310

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  RL QI   ++SNA+ F+  G   +  +     G  +F V + G  +  +    +F  
Sbjct: 311 DPTRLRQILGNLVSNAVKFTRSGGVALSARPGEAPGAVVFDVADTGIGMTPEQQGRLFQS 370

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        RR  G GLGLSI      L  G +++ S     +T    +P
Sbjct: 371 FSQADASIARRFGGSGLGLSICSQLATLMDGAITVDSDLGSGSTFRLTLP 420


>gi|330506779|ref|YP_004383207.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328927587|gb|AEB67389.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 1103

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 22/260 (8%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    E  L    E    A   K++F+ ++S+E+R+P+  ++G T LL  +    L 
Sbjct: 566 DITDQKMVEEDLKNSKERAELATRSKSNFLANMSHEIRTPMNAVVGMTGLLLET---DLK 622

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS---IAT 660
            +Q +Y+E I      LL ++N+ILD + ++   M+L    I+  DLL  +++S   +A 
Sbjct: 623 PEQREYLETIRTGGNTLLAIINNILDYSKIEGEKMELE---ILPFDLLGCIEESMDMVAA 679

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNG 717
              E  + I    D  +  F+  D+ RL QI   +L NA  F+ KG  V+  +    D+G
Sbjct: 680 NAAEKGLEIAYFQDDDVPRFILGDQIRLRQILVNLLGNATKFTEKGEIVLSLSTTPLDDG 739

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             +  F V + G  I ++    +F  F  V ++      G GLGL+I    + +  G + 
Sbjct: 740 RIELHFRVMDTGIGISQENLSRLFQFFTQVDSSTTRHYGGTGLGLAISRRLVEMMEGRIW 799

Query: 774 ISSSDEGVT-----TINCRI 788
           +  S++GV      TI C++
Sbjct: 800 V-ESEKGVGSTFHFTIRCQL 818


>gi|327538858|gb|EGF25501.1| sensory box histidine kinase [Rhodopirellula baltica WH47]
          Length = 417

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 168/362 (46%), Gaps = 44/362 (12%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIA 484
           ET+ N    +Q      LS+GV V   D  + L NP A R L          G   R+  
Sbjct: 67  ETRQNASALLQ------LSDGVIVLAKDFSVLLINPSAVRLL----------GLKKRD-- 108

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           A   R + E        A I S   E++  + T+E+    V+     PL   +  +  ++
Sbjct: 109 ALLGRCFTELVRVPQLLASIRSAVREQQPQEFTVEVHDQGVMR----PL---RVRVDLID 161

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +    + +L ++ EA R+ +E++  F+ +VS+EL++PL  I G+ +   T +L   + 
Sbjct: 162 TGEEPNLQLSLRDETEA-RRVEEMRREFIANVSHELKTPLAAIKGYAE---TVELAVQDD 217

Query: 605 KQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +   +++ I +    L  LV++++ LA   AG   L+ S++ L++++++  ++     
Sbjct: 218 PDAALHFMQQIMSQCLRLERLVHEMMQLARAQAGPANLHLSSVSLSEIVSDAIRTYEPVA 277

Query: 663 HENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             N +  I+ +  G+    +ADR+  L I + ++ NA+ ++  G  + +        +  
Sbjct: 278 AANGLDLIQEVPSGE-AKIIADREATLTIANNLIGNALRYTPSGGEIRVSIVEQTDQWAL 336

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSIS 775
            V++ G  IP    + +F RF    +RG R       G GLGL+IV+       G VS++
Sbjct: 337 VVEDTGVGIPYSEQQRIFERF----YRGSRNEESSTSGTGLGLAIVKHLTQAQQGDVSVT 392

Query: 776 SS 777
           S+
Sbjct: 393 ST 394


>gi|330810540|ref|YP_004355002.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378648|gb|AEA69998.1| putative Histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 472

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 20/239 (8%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIG----FTDLLKTSKLGSLNSKQSQYVEY 612
           E+NE +R+       F+  VS+ELR+PL+ + G      D ++T    S+ S Q +    
Sbjct: 245 ERNEKMRR------EFMADVSHELRTPLSVLRGELEAIEDGVRTLDPSSMKSLQGEV--- 295

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
                ++L  LV+D+ +L+  D G +    S   LNDLL+        + +  ++R+++ 
Sbjct: 296 -----SMLSKLVDDLYELSLADVGALTYRKSECDLNDLLDGCVAMFQERCNARHLRLELE 350

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                    AD +RL Q+FS +L NA+ ++ +G  + ++AA ++        ++G  +  
Sbjct: 351 LPTTPLQVEADPKRLQQLFSNLLENAVRYTDEGGVLRIRAASEDDVVRIDFLDSGPGVDA 410

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D    +F RF        R   G GLGL+I  S    HGG +S   S  G   +  R+P
Sbjct: 411 DQLPRLFERFYRGETSRNRASGGAGLGLAICHSIALAHGGSLSADHSPLGGLWLTLRLP 469


>gi|265755246|ref|ZP_06090016.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234388|gb|EEZ19978.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 772

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 12/267 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           V+ Y II   NA  +  +   T D +   + + ++NEAL  +   +   V  +++ELR+P
Sbjct: 259 VISYIIIH-RNANRIKRYKQETADLIERLQQMAKRNEALITS---RKKAVHTITHELRTP 314

Query: 584 LTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           LT I G+  L++ +     N+ K   Y+  I  SS  +  ++N +L    +D G  + N+
Sbjct: 315 LTAITGYAGLIQKN----FNADKTGMYIRNIQQSSDRMREMLNTLLSFFRLDDGKEQPNF 370

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           ST  ++ + + ++           + + V +       + D++R+LQI + +LSNA+ F+
Sbjct: 371 STCRISSIAHTLESEFMPIAINKGLALTVTNHTD-AVVLTDKERILQIGNNLLSNAIKFT 429

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             G+ V L    DNG     VK+ GS + E+  + VF  F   ++   + G GLGLSIV+
Sbjct: 430 ENGA-VSLTMGYDNGMLKLIVKDTGSGMTEEEQQRVFGAFERLSNAAAKDGFGLGLSIVQ 488

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             + + GG + + S     +     IP
Sbjct: 489 RIVTMLGGTIQLKSEKGKGSRFTVEIP 515


>gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 827

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 16/240 (6%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A  +AD  K  F+ ++S+E+R+P+  IIG  DLL  ++   L+  Q QYV+ I  SS  L
Sbjct: 443 AAEQADRTKTEFLANMSHEIRTPMNGIIGMADLLSETE---LHEDQEQYVQIIRTSSKAL 499

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679
           L ++NDILDL  +++G + L      L   +      +     E  + + V  + G   +
Sbjct: 500 LKIINDILDLTRMESGKLSLEPVDFDLESCIENAVDILRPVASEKGLDLTVNYASGLPRT 559

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             AD  RL QI   ++ NA+ F++ G     +L A+ +       V++ G  +      +
Sbjct: 560 VRADDGRLRQILVNLVGNAVKFTASGRVDVRVLCASTNPYRLTIDVQDTGIGMTSAQLHN 619

Query: 738 VFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTT-----INCRIP 789
           +F+RF S A     R   G GLGL+I         G +++  SD G  +     I C+ P
Sbjct: 620 IFDRF-SQADAATTRSFGGTGLGLTISRLLAKQMDGDITV-YSDPGRGSCFSLHIQCQAP 677


>gi|325290339|ref|YP_004266520.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965740|gb|ADY56519.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 894

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 31/288 (10%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-----VTDSVRAERALTEK 558
           + SF DE+ SL      + D  LE  ++    AQT     N     +    +AE  +   
Sbjct: 255 VFSFRDEKFSL------VPDGSLELRML----AQTFNALSNSFQEELVKRKKAEETMKAA 304

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E    A++ K+ F+  +S+E+R+PL  IIG+  LL+ +    L  KQ++YV  +  +S 
Sbjct: 305 KEEAETANKAKSEFLAQMSHEIRTPLHTIIGYQYLLENT---FLEEKQTEYVRNLGLASK 361

Query: 619 ILLNLVNDILDLATVDAGIMKLNYST----IVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            LL ++N+ILD + ++A  M L        +++ DL + ++  I  K  + N  IK    
Sbjct: 362 NLLEIINEILDFSKLEAKKMVLEAVDFDLYLLIEDLCSMLEVEIRRKKLQFNFTIKPDVP 421

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI 730
             L     D  RL Q+   +LSN + F+ +GS  +    ++  +      F V + G  I
Sbjct: 422 RYLK---GDTTRLKQVILNLLSNGIKFTHEGSLQLFVELKEQKNRTVMLCFHVADTGIGI 478

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           P+   + +F  F        R+  G GLGL+I +  + L GG + + S
Sbjct: 479 PQRQIEQLFEVFTQGDTSTSRKYGGSGLGLAISKKIVRLMGGDIFLKS 526


>gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891]
 gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891]
          Length = 1319

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 132/256 (51%), Gaps = 29/256 (11%)

Query: 552 ERAL--TEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           ER L  TE  +A   AD +   K  F+ ++S+E+R+P+  I+G   L   ++L   +  Q
Sbjct: 585 ERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTEL---DPAQ 641

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI--VLNDLLNEVKQSIATKMHE 664
            +Y+  I+ S+  LL ++NDILD + ++ G  KLN  TI   L+++ + +   I+ K  E
Sbjct: 642 HKYLTRINESAKNLLGIINDILDFSKIEVG--KLNIETIDFSLDEVFDNLTNVISLKAQE 699

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDF 719
             I   +  + ++ +  + D  R+ Q+   +  NA+ F+ +G  V+  A R       D 
Sbjct: 700 KKIEFLLDIEPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVV--AVRIEMLTERDV 757

Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774
           +  FSVK+ G  I ++    +F+ F S A     R   G GLGLSI +  + L GG +S+
Sbjct: 758 VLHFSVKDTGIGIDKEKIAHLFDAF-SQADSSITREFGGTGLGLSISKQLVELMGGQLSV 816

Query: 775 SSS-DEGVT---TINC 786
           SS+   G T   TI C
Sbjct: 817 SSTLGAGSTFAFTITC 832


>gi|269836942|ref|YP_003319170.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
 gi|269786205|gb|ACZ38348.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
          Length = 543

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 116/236 (49%), Gaps = 11/236 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK--------LGSL 602
           AER   E   ++ + D  + +FV +VS++LR+P+  + G  + L  S+        LG L
Sbjct: 289 AER-FNEMIASVDRTDRARKAFVANVSHDLRTPVAIVRGHIERLLASRGADPISGSLGEL 347

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-ATK 661
           + ++++ +  +      L  L+ND+  LA ++   + +  + + ++++     + +    
Sbjct: 348 DDEETRSLAVVHQEVLTLERLINDLFTLARIEEATLHIEPAPVAIDEVARAAVEGVRPMA 407

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  + ++ +    L   +ADR RL QIF  +L NA+  + +G  +++ A + +G    
Sbjct: 408 WDQRKVAVEAMLPPGLPPVLADRTRLQQIFGNLLYNALRHTPEGGLIVVGAEQRDGVVEV 467

Query: 722 SVKNNGSSIPEDMCKSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           SV++ G  IPE+   +VF R +      G     GLGL+IV+  +    G + + S
Sbjct: 468 SVRDTGGGIPEEELDAVFQRHYRLGDGAGFGESSGLGLAIVKQLVEAQDGSICVES 523


>gi|228961728|ref|ZP_04123332.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797963|gb|EEM44972.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 613

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD GD +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|209524475|ref|ZP_03273023.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209494933|gb|EDZ95240.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 351

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 28/292 (9%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E  I+    ++ +    ++T S  A+  L    +A   A+  ++ F+  +S+ELR+PL 
Sbjct: 49  FEARIVVSGESEVLAIIRDITQSKLAQIELQRAKDAAESANHAQSEFLASMSHELRTPLN 108

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG+++LL+   +    +     ++ I AS   LL ++ DILD++ +++G+M +     
Sbjct: 109 AIIGYSELLREDAVDFGYTDFIPDLDQIRASGLHLLTIIQDILDISKLESGMMTVCLENF 168

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+ E++  +     +N+ ++KV     +    ADR ++ Q+   +LSNA  F+  G
Sbjct: 169 NIATLIKEIEALVQPLFPKNHNQLKVNCTPDVEGMYADRIKVKQVLLNLLSNAAKFTENG 228

Query: 706 ------------STVILKAARDN--------------GDFIFSVKNNGSSIPEDMCKSVF 739
                        T I    R+N              G   F V + G  +  +    +F
Sbjct: 229 LVNLNVIYIGQLDTKISAYLRENLASSVLVNDEHQLQGGVAFEVIDTGIGLTTEQMTKIF 288

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F    +   RR  G GLGLSI + F  L GG ++++S     +T     P
Sbjct: 289 EPFERADNSTTRRYEGTGLGLSISKRFCELMGGAITVASEIGEGSTFTAYFP 340


>gi|302383451|ref|YP_003819274.1| CBS sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194079|gb|ADL01651.1| CBS sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 539

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 14/226 (6%)

Query: 553 RALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           RALT+ + +AL  A   K+ F+  +S+ELR+P+  ++   +LL+   L   N     +V+
Sbjct: 144 RALTDSRTQALASA-RAKSQFLAIMSHELRTPMNGVLAVAELLRRQPL---NDAAHAHVQ 199

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  LL ++ D LDL+  +AG ++L  +   L  L+++++   A +  ++ +R+ V
Sbjct: 200 TIVDSSETLLRILQDALDLSRAEAGELELTPAPTPLRALVDDIEHLWAPRASQDGVRLMV 259

Query: 672 ISDGKLGSFVADRQ--RLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS--VKNN 726
             +G      AD    R+ Q+F+ ++ NA+ F+  G     LKA  +NG       ++++
Sbjct: 260 GYEGDT-ELTADLDCVRVKQVFNNLIGNALKFARNGVVEASLKAWSENGQVHMEARIRDD 318

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           G  +  D   ++F  FV   H     G GLGLSI    ++   G +
Sbjct: 319 GPGVDADRVDAIFEPFV---HGSGPDGAGLGLSICRQIVDNMNGRI 361


>gi|229158471|ref|ZP_04286532.1| hypothetical protein bcere0010_46460 [Bacillus cereus ATCC 4342]
 gi|228624990|gb|EEK81756.1| hypothetical protein bcere0010_46460 [Bacillus cereus ATCC 4342]
          Length = 365

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 127/245 (51%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 121 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 180

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G+++LN   I +++LL ++ + +   + + ++  
Sbjct: 181 IAY--TKSQRLESLIDELFEITRMNYGMLQLNKKPIDISELLIQLDEELYPLLEKYHLEA 238

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DN + +  V N G S
Sbjct: 239 RLNVDPYL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNEEVVVQVMNYGDS 297

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F + +  R + R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 298 IPEEDLPYLFDMFYTGDKSRAENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTMFEVR 356

Query: 788 IPSKE 792
           +P  E
Sbjct: 357 LPKDE 361


>gi|323487478|ref|ZP_08092772.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
 gi|323399160|gb|EGA91564.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
          Length = 801

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 22/264 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLN-- 603
           R +R L        KA+E K  F+  +S+++R+P+  I+G   +    L++   G+ N  
Sbjct: 386 RKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMASVARFVLQSEVKGTANLQ 445

Query: 604 --SKQSQY------VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              K   Y      +E I  SS  LL+L+NDILD++ +++G MK+    + L D +  +K
Sbjct: 446 CDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGKMKIANREMNLKDTIRNIK 505

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV---ILK 711
             I  +  E      V    ++G F   D  RL QI   +L NA+ ++ +   +   +  
Sbjct: 506 VMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLGNALKYTPEQGEIRLCVTA 565

Query: 712 AARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
              + G+ +  F + + G  + E+    +F+ F      G R   G GLGLSI    + L
Sbjct: 566 GKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSRIFEGTGLGLSISRKLVEL 625

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
             G +S  S     T    +IP K
Sbjct: 626 LNGTISAESEPGKGTVFTVKIPMK 649


>gi|313681752|ref|YP_004059490.1| histidine kinase [Sulfuricurvum kujiense DSM 16994]
 gi|313154612|gb|ADR33290.1| histidine kinase [Sulfuricurvum kujiense DSM 16994]
          Length = 638

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 132/240 (55%), Gaps = 19/240 (7%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A R  +  KN F+ ++S+E R+P+  IIGFTDLLK S    L+S Q +YV+  S S+  +
Sbjct: 125 AERYFEHFKNKFLTNISHEFRTPMNAIIGFTDLLKGS---PLSSWQQEYVQMTSRSAQSM 181

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE----NNIRIKVISDGK 676
           +  + ++L+L  V++G +   ++T+ L + L EV ++ + +  +      I +  + D  
Sbjct: 182 MRNIENLLELMQVESGSI---HTTLALFNPL-EVYENFSMQFCDLALSKEIGLMFLIDPH 237

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFI---FSVKNNGSSI 730
           L  + + D+ ++L I   ++ N + F+ +G +V+++    ++ G+F+   ++V + G  I
Sbjct: 238 LPKTMIGDQDKILAIMRNLIQNGIKFTEEGGSVLVEILIVKEEGNFVEVEYAVSDTGIGI 297

Query: 731 PEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  K++   F S  +  R  + G+G+GLS+   ++++   H+ ++S     +  + RI
Sbjct: 298 ESERIKTLLRPFASAWDNQRKGKDGLGIGLSLSHKYVDMMDSHLMLASESGKGSRFSFRI 357


>gi|323528241|ref|YP_004230393.1| histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385243|gb|ADX57333.1| histidine kinase [Burkholderia sp. CCGE1001]
          Length = 625

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 110/222 (49%), Gaps = 8/222 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+A+  K++F+  + +ELR+PL  I+   +L+      S   ++S    ++      L 
Sbjct: 237 LREANGAKDAFLAMLGHELRNPLAPIVSALELMARRGTDSTARERSVIQRHVDH----LA 292

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV+D+LD++ +  G ++L+   + +++++ +  +     +     R+ +  DG L  F 
Sbjct: 293 RLVDDLLDVSHMIRGNVELHRQRVDVHEVVTKAVEMTRVLVQRRAHRLNIEVDGALECF- 351

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFN 740
           AD  RL Q  + +L NA  ++  G  + + AA    G     V++ G  I  D    +F+
Sbjct: 352 ADPARLAQAIANLLINAARYTEPGGAITVSAAGTGAGTLRIGVRDTGIGIAPDALPRIFD 411

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            F        R   G+G+GL++  +F+ LHGGH+  +S   G
Sbjct: 412 TFYQGTQTIDRAHGGLGIGLALARNFVELHGGHIEAASGGRG 453


>gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1233

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 110/223 (49%), Gaps = 16/223 (7%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K +F+ ++S+E+R+PL  ++G+  L+   +   L   Q Q +  +  S+  LL+++ND
Sbjct: 722 QAKGAFLANMSHEIRTPLNAVLGYVQLMLRDR---LEPAQRQRLAVVEESAATLLSIIND 778

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           ILD + ++AG +++   +  L   L  V +       E  + + + +  G  GS   D  
Sbjct: 779 ILDYSKIEAGRLEIKAESFDLAQCLAAVVKEQEVLAREKGLTLDLQLDPGLPGSVRGDGL 838

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARD-------NGDFI---FSVKNNGSSIPEDMC 735
           RL QI   +++NA+ ++  GS  +  +  D       +G+ +   F+V + G  IP D  
Sbjct: 839 RLRQILRNLVNNAVKYTEHGSVTLRASLLDRSPCPTGSGERVTLRFAVIDTGVGIPADQL 898

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++F+ F  V      ++ G GLGL+I      L  G V + S
Sbjct: 899 PAIFDSFTQVDGGLTKRQAGTGLGLAICRRLAGLMSGEVFVDS 941


>gi|228991892|ref|ZP_04151828.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM
           12442]
 gi|228767621|gb|EEM16248.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM
           12442]
          Length = 458

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +++++ D+++  FV +VS+E +SPL++I GF+  L++ K+     ++ +Y++ I   S  
Sbjct: 230 KSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSEKM--TEDERKRYLQIIEGESKR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           + +L   +L LA++D     L      ++  + +V   +  K  E +I ++   D    +
Sbjct: 288 MSSLCKQLLTLASLDKEEKVLQIKEFDVHKQMKDVIFMLEWKWREKDIAVEF--DVPSIN 345

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q+++ I +N++ F+  G T+           + S+ ++G  + ++  + +F
Sbjct: 346 VRGDENLLHQVWTNIFTNSIKFTDSGGTIGFAVEELEASVVISISDSGIGMEQEEVERIF 405

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +RF  V  A      G GLGLSIV+  + LH G +S+ S     TT    +P
Sbjct: 406 DRFYKVDTARARNVEGSGLGLSIVQKIVELHHGEISVESIRGEGTTFRIELP 457


>gi|229078745|ref|ZP_04211299.1| hypothetical protein bcere0023_14080 [Bacillus cereus Rock4-2]
 gi|228704618|gb|EEL57050.1| hypothetical protein bcere0023_14080 [Bacillus cereus Rock4-2]
          Length = 604

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 141/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ V 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNVD 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ IPE
Sbjct: 482 ADPSI-LVTANRSRIEQVVVNLLSNAIRYTPEGEKIQVSIIEAEDTVKVEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
 gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
          Length = 1343

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 121/244 (49%), Gaps = 27/244 (11%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E  ++ +E+K  F  ++S+ELR+PLT I+     +          KQ   +EY+  ++  
Sbjct: 819  ERQKEVNEMKLRFFINISHELRTPLTLILAPVQEMLDKVSDRWLHKQ---LEYVQKNTNR 875

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE---------VKQSIATKMHENNIRIK 670
            LL+LVN ++D    + G+  L      +++++ +          ++ IA  +H N     
Sbjct: 876  LLHLVNQLMDYRRAELGVFNLKVRPNPIHNVIEKDFSFYERLAQRKQIAYNLHSN----- 930

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              ++G+    + D   +  I + +LSNA  ++ +G ++ +    +N + +  VK+ G  I
Sbjct: 931  --AEGR--EILCDPDYMELIVNNLLSNAFKYTGEGKSITVTLKEENHELLLQVKDTGDGI 986

Query: 731  PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            P D    +F RF  + N H G     G+GLS+V+  ++LH G + + S +   +T +  +
Sbjct: 987  PFDKQGKIFERFYQIDNEHLGS----GIGLSLVQRLVDLHHGRIELESEEGAGSTFSVYL 1042

Query: 789  PSKE 792
            P++E
Sbjct: 1043 PTEE 1046


>gi|197120956|ref|YP_002132907.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196170805|gb|ACG71778.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 383

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 12/239 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLT--NIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           L E  EA+R  D+    F+   S+ELR+PLT   ++  +   +T +   +  +Q + +  
Sbjct: 148 LAEAREAVRSRDD----FLAVASHELRTPLTCVQLVAQSLARQTHEGQPVTGQQVERLHQ 203

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L  LV+ +LDLA +  G ++L  +   L++L+ EV       +      + V 
Sbjct: 204 LQRHVARLGELVSGLLDLAEMSRGALQLEPAPFDLSELVQEVAARFEPDVRRKGTALSVH 263

Query: 673 SDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI- 730
           + G + G +  DR+R+    + +L NA+ +  + S + + A+RD+   +  +++ G  I 
Sbjct: 264 APGPIPGRW--DRRRVADAIAAVLGNAVKYGGR-SPIEVTASRDDRRALVVIEDRGPGIA 320

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           PED  + VF RF   A      G+G+GL      +N HGG +++ S+       + R+P
Sbjct: 321 PEDQSR-VFERFERAAPVAHYPGLGVGLWTARQILNAHGGDIAVESASGKGARFSLRLP 378


>gi|156977382|ref|YP_001448288.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156528976|gb|ABU74061.1| hypothetical protein VIBHAR_06169 [Vibrio harveyi ATCC BAA-1116]
          Length = 1225

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 9/255 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M  F ++++  + E AL   N    +A E +  F+  VS+ELR+P+  ++G  +LL+   
Sbjct: 663 MTVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLMELLEQD- 721

Query: 599 LGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +  K+S+ +   +  S   L L VNDILD + +DA  ++L+     +   L    +S
Sbjct: 722 ---VERKESKELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQELGATLRS 778

Query: 658 IATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +   ++  ++       + VA D  R+ QI + +LSNA+ F+ +G  ++      N
Sbjct: 779 FEKIIERKSLAFELNWTPTPHALVALDWLRVNQIINNLLSNAVKFTKEGKVIVSVHVSPN 838

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F V++ G  +      ++F  FV       RR  G GLG+SIV+S +++  G + +
Sbjct: 839 -QLEFKVQDTGCGMNNAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLVDIMEGTIEV 897

Query: 775 SSSDEGVTTINCRIP 789
            S  E  TTI  R+P
Sbjct: 898 DSQTEQGTTITVRLP 912


>gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1425

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 17/273 (6%)

Query: 529  SIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            S +P      +L  V  ++T     E  L E      +A ++++ F+  +S+ELR+P++ 
Sbjct: 786  SFVPQEEGHLILNGVIQDITALKHQEHDLREARAYAEQAMQVRSRFLATMSHELRTPISG 845

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            + G  +LL+ S+L   N  Q   +  +  S+  LL LVND+LD + ++AG ++L+Y    
Sbjct: 846  MHGMLELLQMSEL---NDDQRYLLRNVVTSTNNLLYLVNDVLDFSKIEAGQLQLHYQDCR 902

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL-----LQIFSKILSNAMDF 701
            L  ++ +V +  AT  H   +++ +    +    V D+ R+      Q+ S +L+NA+ F
Sbjct: 903  LASVICDVIRGHATLAHGKGLKVTL----EWAPEVPDQARIDAVRVGQVLSNLLNNAVKF 958

Query: 702  SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
            + +G  + ++ + +      +V + G  I ED    +F  F        RR  G GLGL+
Sbjct: 959  TERGE-IRIQVSFEKERLAIAVSDTGIGIAEDKQDRLFTPFEQVESDITRRFGGTGLGLA 1017

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            I        GG + + S     T +    P  E
Sbjct: 1018 ICHQLAQKMGGTLVLESKPGHGTRLTFDFPLAE 1050


>gi|115380175|ref|ZP_01467204.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362817|gb|EAU62023.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
          Length = 946

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 126/239 (52%), Gaps = 10/239 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  + E +R    +K+ F  +VS+ELR+PLT I+   + L      +      Q++  +
Sbjct: 283 ALDTQKELIR----LKSEFFDNVSHELRTPLTLILLSLESLLQRDPSAYPDSVRQHLATM 338

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL L+N++LDLA ++AG ++L Y  + L+ LL  +         +  + + ++ 
Sbjct: 339 ERSAHRLLKLINNLLDLAQMEAGKLRLRYQAVELHSLLTSLLSPFRVMAEKKGLTLTLVG 398

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
              +G    D +R+  +F  ++SNA+ F+ +GS V ++ + D+      V++ G  I P+
Sbjct: 399 QA-VGPIHGDVERIEVVFQNLVSNALKFTQQGS-VQVRVSEDSSSVFVEVEDTGPGIAPQ 456

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D+   +F+RF      G RR  G G+GL++V+  ++LH G + +SS      T   ++P
Sbjct: 457 DI-DVIFDRFAQADSTGTRRFGGTGIGLALVKETVDLHSGSIRVSSVVGKGATFRVQLP 514



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 105/248 (42%), Gaps = 19/248 (7%)

Query: 550 RAERALTEKNEALRKADEIKNS----FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R E  L  ++ A+R A+  + +         ++E+R+PL  ++     L+ S LGS    
Sbjct: 679 RIEAQLRLRDAAVRAAENERLAATGLLTSGFAHEVRNPLNGLMNAMLPLRESILGSQVDP 738

Query: 606 QS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    ++ +    T + +L   +L        ++ +N     L   L+     +A K+ 
Sbjct: 739 DTTRAMLDVMEECGTRIRHLAESLLSFVRTSDRLVPVN-----LGASLDSTLSVLAWKIP 793

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +   + V+ D +       D   L Q++  ++ NA+        + +    D    + S
Sbjct: 794 PD---VLVVRDYQCDVPITGDPGSLNQVWVNLIDNALRAVGDKGQLRISTEHDGATAVVS 850

Query: 723 VKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + + G+ I PEDM + +F  F S    G+  G GLGL++    +  HGG + ++S     
Sbjct: 851 ITDTGTGIKPEDM-ERLFQPFFSTRAAGE--GTGLGLALCRRIVLRHGGLIQLTSEWGKG 907

Query: 782 TTINCRIP 789
           T    R+P
Sbjct: 908 TRCEVRLP 915


>gi|20808059|ref|NP_623230.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516640|gb|AAM24834.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 456

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 168/354 (47%), Gaps = 26/354 (7%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           ++ GV  F    RI + N + + +   EE  L+ G  +  +  +   Y       ++F  
Sbjct: 121 IANGVIAFDNAERILMMNDSAKKILGIEEKDLT-GRRVFEVIRSSKLY-------EVFET 172

Query: 503 IITSFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           +  +     KSL+  L   +  +  Y S I  P +   L FV V D +      TE    
Sbjct: 173 LRKNKVLSSKSLE--LNFFNKHLKVYISPILHPVSHVNLGFVLVIDDI------TE---- 220

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +RK ++I++ FV +VS+ELR+PLT+I GF + L++  + +  +++ ++++ I   +  L 
Sbjct: 221 MRKLEKIRSEFVANVSHELRTPLTSIRGFIETLRSGAIENPEARE-KFLDIIDFEAERLT 279

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            L+NDIL L+ ++          I ++  + ++   +     + +I +K  ++ G L + 
Sbjct: 280 RLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNL-TI 338

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +A+R R  Q+   ++ N + ++ +G  V +    +    I  V++NG  IP+D    +F 
Sbjct: 339 IANRDRFHQMMINLIDNGIKYTQEGGFVKVSTRLEGEKIIIEVEDNGIGIPKDKIPRLFE 398

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF  V  +   +  G GLGL+IV+  +    G +S+ S     T    R   K+
Sbjct: 399 RFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRFNRKD 452


>gi|294776124|ref|ZP_06741616.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|294450034|gb|EFG18542.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 771

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 550 RAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R    + ++ E+LR+ + +   +   VQ +++ELR+PL  I G+T L++         K 
Sbjct: 277 RTAELIGKQQESLRQNEALIASRKKAVQTITHELRTPLNAITGYTGLIEKEHD---PEKS 333

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y+  I  SS  +  ++N +LD   +D+G  +   S   ++ L   ++   A +     
Sbjct: 334 AKYIRNIRQSSDRMRGMLNTLLDFFRLDSGKEQPCLSPCRISILTQTLETMFAPEAMNKG 393

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + ++V  + +  +FV  D++R+LQI + +LSNA+ F+  G   +L   RD G    +V++
Sbjct: 394 LALEV--ENRADAFVITDKERILQIGNNLLSNAIKFTENGYVSLLTEYRD-GMLALTVED 450

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G+ + ++  + VF  F   ++   + G GLGLSIV   + + GG++ + S     +   
Sbjct: 451 TGTGMTDEEQQRVFGAFERLSNAATQDGFGLGLSIVRHIVRMLGGNIRVESEKGKGSRFI 510

Query: 786 CRIP 789
             IP
Sbjct: 511 AEIP 514


>gi|260550574|ref|ZP_05824783.1| signal transduction histidine kinase [Acinetobacter sp. RUH2624]
 gi|260406285|gb|EEW99768.1| signal transduction histidine kinase [Acinetobacter sp. RUH2624]
          Length = 1154

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 135/261 (51%), Gaps = 8/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +       + L +   A  +A++ K+ +V  +S+ELR+PL +I+G++ LL+ 
Sbjct: 652 QTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 711

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L+ +    +  IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q
Sbjct: 712 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIGQIIQ 769

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  + N++        L  +V  D++RL Q+   +L NA+ F++ G T+ LK    
Sbjct: 770 MFQPQFEQKNLQFVYEIGDNLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 828

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I E   + +FN F   SN  +G   G GLGL IV+  ++L GG +S
Sbjct: 829 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLS 888

Query: 774 ISSS-DEGVT-TINCRIPSKE 792
           ++S  ++G    I   +PSKE
Sbjct: 889 VASQLNQGSQFKIKFYLPSKE 909


>gi|119487951|ref|ZP_01621448.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119455527|gb|EAW36665.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 799

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 125/259 (48%), Gaps = 29/259 (11%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K + L++ +++K+ F+  VS+ELR+PLTN+     ++K   L S N +  +Y+  + 
Sbjct: 545 LQQKVKELQQLNKLKDDFLSTVSHELRTPLTNMKMAIHMMK---LVSQNEQVQRYISILE 601

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              T   NL+ND+LDL  ++A    ++  T+ L+  L ++ Q   ++  E    + V   
Sbjct: 602 QEWTRETNLINDLLDLQKLEASSTPISLETVELSQWLPQMLQPFYSRTQERQQLLNVKYP 661

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------- 718
             L S +++   L +I +++L+NA  ++  G  V L    +                   
Sbjct: 662 KNLPSILSNSSSLERILAELLNNACKYTPNGGEVCLTVRDETATETRSSKKSSKTKNNEE 721

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
                   F++ N  + IPE     +F++F  V NA   ++ G GLGL++V+  +    G
Sbjct: 722 DSKPLGVKFTITNQ-AEIPEKEIPKIFDKFYRVPNADPWKQGGTGLGLALVQKLVEQLRG 780

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + SS + +TT    +P
Sbjct: 781 EIKV-SSQKNLTTFTVELP 798


>gi|283850395|ref|ZP_06367684.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283574421|gb|EFC22392.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 782

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 25/256 (9%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----------TSKLGSLNS 604
           L E N  + + D +K++F+  VS+ELR+PLT+I+GF  L+            S   +L +
Sbjct: 510 LAEANIRMSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGRDFTEQFLPLASGQAALEA 569

Query: 605 KQSQYVEYISA---SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +  +  + +S     +  L  L+ND+LDL+ +++G M      I   D+L    +SIA  
Sbjct: 570 RGRRIADNLSVVFHEAERLTRLINDVLDLSRIESGSMHWRDRRIAPLDVLRTAARSIAGL 629

Query: 662 MHENNIRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +      I  + D   ++     D  +L+Q+ S +L NA+ F+  G   +    R +G+ 
Sbjct: 630 LAARP-EIVFVFDATEQVPDLFMDPDQLIQVVSNLLQNAVKFTRTGE--VRMTVRTDGEA 686

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-----RRGVGLGLSIVESFINLHGGHVS 773
           +   V ++G  IPE   +S+F +F     RG       +G GLGL+I    +  +GG + 
Sbjct: 687 VQIVVADSGIGIPESELESIFGKF-HQVGRGDTLSDAAKGTGLGLAICGQIVRHYGGRIW 745

Query: 774 ISSSDEGVTTINCRIP 789
            +S     +  + R+P
Sbjct: 746 ATSRLGQGSAFHVRLP 761


>gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82]
 gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164]
 gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82]
 gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164]
          Length = 934

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 116/226 (51%), Gaps = 9/226 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+ELR+PL +I GF  L+   +  +L+++Q+ Y++ I  SS  LL L+
Sbjct: 285 ANQAKSVFLANISHELRTPLNSIDGFIHLML--RQDNLSNEQNLYLQTIRKSSAHLLALI 342

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    +  I +       +  + V D
Sbjct: 343 NDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYGDDVPQYIVGD 402

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
             R  QI + ++SNA+ F+  G  ++      +G       FSV+++G  +     K +F
Sbjct: 403 VLRFKQILTNLISNAIKFTPDGEIIVRARMEQDGMEQCLLHFSVQDSGIGLSGTDRKKLF 462

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 ESFSQGDTSVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPT 508


>gi|229171431|ref|ZP_04299016.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3]
 gi|228612135|gb|EEK69372.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3]
          Length = 421

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+    K  +   ++ +Y+  I   S  + NLV D+ 
Sbjct: 200 RSEFLASVAHELRTPLTYVRGYADI--ALKENTSPEQRLRYLSIIKDESDYITNLVQDLF 257

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +    + L+  L  + + +     E  I++       L     D QR  
Sbjct: 258 SLAQMEQHNFSIQVKEVYLHTFLTRIAEKVNAMYKERYIKVSFSCPPTL-LINLDEQRFE 316

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   IL+NA   S K S + +    ++     ++++ G  IP +    +F+RF  V  A
Sbjct: 317 QVVVNILNNAYRHSQKHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKA 376

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 377 RSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLPS 420


>gi|209544462|ref|YP_002276691.1| GAF sensor signal transduction histidine kinase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532139|gb|ACI52076.1| GAF sensor signal transduction histidine kinase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 396

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 21/241 (8%)

Query: 558 KNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +NEA+    R   E++  F+  + ++LR+PL +I   T +L          + ++ V +I
Sbjct: 158 ENEAILSHERTQSELREQFIAVLGHDLRNPLMSIESGTRMLL-----RYPERAAELVPHI 212

Query: 614 SASSTILLNLVNDILDLAT--VDAGI---MKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             S+  +  L+ND++D A   +  GI   +K+ ++   L  +L ++ Q + T   E  I 
Sbjct: 213 QKSTARMGALINDLMDFARGRLGGGITLQLKVEHA---LQAILEQIVQEVKTTRPERRIE 269

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +   +    +   D  RL Q+FS +LSNA+        ++++A+ +   F  SV N G 
Sbjct: 270 TRFQMEH---AVTCDTVRLAQLFSNLLSNAVTHGDPDKPIVVRASTNEKFFELSVSNAGK 326

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP +  + +F+ F     R  ++G+GLGL IV      H G ++++S ++  T    R+
Sbjct: 327 PIPPEAHEKLFHPFFRGGDRPSQQGLGLGLYIVSEIAKAHRGRLAVTSGNDE-TCFTFRL 385

Query: 789 P 789
           P
Sbjct: 386 P 386


>gi|160885979|ref|ZP_02066982.1| hypothetical protein BACOVA_03984 [Bacteroides ovatus ATCC 8483]
 gi|156108792|gb|EDO10537.1| hypothetical protein BACOVA_03984 [Bacteroides ovatus ATCC 8483]
          Length = 628

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 11/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++     
Sbjct: 383 DITELKRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENA--- 439

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++  Y   I  ++ +LLNL+ND++DL+ +++G ++L    + L +LL+E   S+A   H
Sbjct: 440 AEKELYNSLIGHNNKLLLNLINDVIDLSKIESGYLELRPDWVNLTELLDE---SVAEYAH 496

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++++++      +   D  R+ QI S  LSNA+  ++ G   +     D+     
Sbjct: 497 QVPSGVELLTNYPAHDSLVELDSLRIKQILSNFLSNALKNTTTGHVEVFYEV-DHQSVRI 555

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  IP++M + +F RF       Q  G GLGLSI +  +    G V + S     
Sbjct: 556 GVKDTGRGIPQNMLEKIFERFEKLDSFAQ--GAGLGLSICKLIVEKMNGRVLVDSQLGIG 613

Query: 782 TTINCRIPSK 791
           TT    +P +
Sbjct: 614 TTFVIELPCR 623


>gi|330821820|ref|YP_004350682.1| ATP-binding region, ATPase-like protein [Burkholderia gladioli
           BSR3]
 gi|327373815|gb|AEA65170.1| ATP-binding region, ATPase-like protein [Burkholderia gladioli
           BSR3]
          Length = 908

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 30/261 (11%)

Query: 550 RAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           R ERA+ E+ EAL        +A+  K  F+  VS++LR+PLT+IIGF DL++       
Sbjct: 432 RLERAVGERTEALHTALIAAGEANRAKTDFLARVSHDLRTPLTSIIGFADLVQAG----- 486

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLAT---VDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             + +     I  S+T +L++VND++D A     DA      Y+  +L+ L NE  QS+A
Sbjct: 487 GREDAARGGIIRRSATHMLHMVNDLIDFAAGRDTDALHPAPVYTHALLDALSNEA-QSLA 545

Query: 660 TKMHEN---NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            K       ++R +V    +L     D +R+ QI   ++ NA+ F+  G+  +    R  
Sbjct: 546 GKAGLRFVLDLRNEVPPILEL-----DDKRIRQIVGNLVDNAIKFTRAGTVTLSVDCRSE 600

Query: 717 GD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
                    + +V + G  I  +    +F  F          G+GLGL+IV+ +++   G
Sbjct: 601 PPATAAVALMIAVSDTGCGIAAEAQSRIFEPFHRLDAARSLPGIGLGLAIVKHWVSRMNG 660

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            +++ S+    TTI   IPS+
Sbjct: 661 MLTLDSTPGLGTTITLTIPSR 681


>gi|315633871|ref|ZP_07889160.1| sensor histidine kinase [Aggregatibacter segnis ATCC 33393]
 gi|315477121|gb|EFU67864.1| sensor histidine kinase [Aggregatibacter segnis ATCC 33393]
          Length = 618

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 128/257 (49%), Gaps = 13/257 (5%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S   L  S++ L N         V + + AE+ L+   + + K    K + +  +S+ELR
Sbjct: 86  SRQALSRSVVKLQN--------EVQERLLAEKRLSAALDKVEKISRDKTTLMTTISHELR 137

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG + +L   +     ++QS Y+  I++S+  L ++ +DI+DL  +DA  ++L+
Sbjct: 138 TPLNGIIGLSRILLEEQP---TARQSSYLRTINSSAISLSHIFSDIIDLEKIDARRIELD 194

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMD 700
                L  LLN++         E ++  ++I    L +++  D  RL QI   +++NA+ 
Sbjct: 195 RKETDLYALLNDISNFAVLIAGEKHLEFRLICPPTLPNWLMLDGVRLSQILWNLITNAVK 254

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLS 759
           F+ +GS  +        +F   V + G  I E   + VF  +   ++H  +  G G+GLS
Sbjct: 255 FTPQGSVTLSIEQTAEDEFAIRVTDTGIGIAEADLEKVFELYYQVDSHHYKSLGSGIGLS 314

Query: 760 IVESFINLHGGHVSISS 776
           I ++   L  G +++SS
Sbjct: 315 ISKTIAQLMDGDLTVSS 331


>gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1284

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 11/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T    AE AL    E    A   K  F+  +S+E+R+P+  ++G  +L+    L  L+
Sbjct: 545 DITARKLAEEALRAAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMA---LTPLD 601

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   V  +  S   LL +++DILDL+ ++AG ++L    +   DL+  V   +A + H
Sbjct: 602 EEQRTLVSTMRDSGAALLRIIDDILDLSKIEAGKLELEELDLSPADLVEGVADLLAPQAH 661

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  + +    DG +   +  D  RL QI   +  NA+ F+ +G  V+   A    D    
Sbjct: 662 QKGLALICDIDGSVPERLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRVQAAATADPTLI 721

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               +V+++G  I  +    +F  F        RR  G GLGL+I    +   GG + + 
Sbjct: 722 RLTVAVEDSGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLVERMGGRIGVE 781

Query: 776 S 776
           S
Sbjct: 782 S 782


>gi|253682114|ref|ZP_04862911.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253561826|gb|EES91278.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 551

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 132/253 (52%), Gaps = 13/253 (5%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNE------ALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + +  F +VT+ ++ E+   + NE        R+ ++I+  F  ++S+EL++PL  I+  
Sbjct: 248 KILSVFRDVTEYLQIEKIKQKSNENKKLLDKEREFNKIRTEFFANLSHELKTPLNVILSS 307

Query: 591 TDLL----KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             LL    +  +   ++  K  ++++ +  +S  LL L+++++D+  +D+G   LN    
Sbjct: 308 QQLLALYLRNGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLENH 367

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  ++ ++  ++   +   +I++   +D +    + D  ++ +I   +LSNA+ F+ KG
Sbjct: 368 NIVTIIEDITLAVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKG 427

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
             + +    D      +V++NG  IP+D    +F+RF  V  +      G G+GLS+V++
Sbjct: 428 GKIKVNIHDDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDKSFTRISEGSGIGLSLVKA 487

Query: 764 FINLHGGHVSISS 776
            I +H G +S+ S
Sbjct: 488 LIEMHNGTISVES 500


>gi|149376372|ref|ZP_01894135.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149359386|gb|EDM47847.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 756

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 25/257 (9%)

Query: 553 RALTEKNEALRKADEI--------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           R ++EKNEAL++ +                + +F+  +S+E+R+PL  ++G   +L  + 
Sbjct: 241 REISEKNEALQRGNRALVRAKEDAVRRARARANFLASMSHEIRTPLNGVLG---MLGLAL 297

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G++   Q   +E    +   LL L+NDILD++ V+AG + L      L +L+ E     
Sbjct: 298 EGNMEQAQRNRLEIALNAGQSLLGLLNDILDISKVEAGKLSLENIPFSLRNLVEECATLH 357

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +    NI +    D +L  +F+ D  R  QI + +LSNA+ F+  G  V ++A R NG
Sbjct: 358 AQQARRKNIDVVADIDCELPETFLGDPTRTRQILNNLLSNAIKFTESG-CVRIRATRYNG 416

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFI-NLHGGHVS 773
           +    V + G  + ++    +F+ F S A     R   G GLGL++    +  +HG  + 
Sbjct: 417 NVRIDVIDTGIGMSKEGLHRIFSPF-SQADSDTTRLYGGTGLGLTLCRQLVERMHGQILV 475

Query: 774 ISSSDEGVT-TINCRIP 789
            S   EG   T+N  +P
Sbjct: 476 DSEEHEGTHFTVNLPLP 492


>gi|126640645|ref|YP_001083629.1| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
           17978]
          Length = 906

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  SS  LL L+
Sbjct: 257 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRKSSAHLLALI 314

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 315 NDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGD 374

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 375 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 433

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 434 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 480


>gi|326202730|ref|ZP_08192598.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987314|gb|EGD48142.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 463

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 7/215 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILL 621
           KA+E KN F+  VS+ELR+PLT I G+ + + T   GS   K+   + ++ I   +  L 
Sbjct: 239 KAEETKNDFISSVSHELRTPLTAIKGWGETIIT---GSFEDKEEIEKGLKVILRETDRLK 295

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N+V+++LD + ++   + LN     + + + E+ +    +  +  I ++      +  F 
Sbjct: 296 NMVDELLDFSKLEGNKLVLNMEKTDIKEEIEEILRLYDGRAKKERISLQSKFTENIPEFS 355

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R  Q+   IL NAM FS K S +++  +    + I  + +NG  I ++    + ++
Sbjct: 356 VDRNRFKQVIINILDNAMKFSPKDSNILINVSTLENELIIEIIDNGYGIAKEDLPKIKDK 415

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F       ++ G G+GL++ +  I LHGG + + S
Sbjct: 416 FFKG--NSKKSGSGIGLAVCDKIIKLHGGSLELKS 448


>gi|229069114|ref|ZP_04202406.1| hypothetical protein bcere0025_13210 [Bacillus cereus F65185]
 gi|228714059|gb|EEL65942.1| hypothetical protein bcere0025_13210 [Bacillus cereus F65185]
          Length = 604

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 141/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ V 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNVD 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ IPE
Sbjct: 482 ADPSI-LVTANRSRIEQVVVNLLSNAIRYTPEGEKIQVSIIEAEDTVKVEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|148379108|ref|YP_001253649.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|153933199|ref|YP_001383489.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|148288592|emb|CAL82673.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929243|gb|ABS34743.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
          Length = 477

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 128/231 (55%), Gaps = 16/231 (6%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ----SQYVEYISASSTILLNLVNDI 627
           F  ++S++L++P+  I     ++  +    L++K+     +Y+  I  +   LL LVN+I
Sbjct: 222 FYANISHDLKTPINIIYSAIQVMNMA----LDNKKIDTIEKYIGVIKQNCYRLLRLVNNI 277

Query: 628 LDLATVDAGI--MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++   +++G   +KLN + IV   L+ ++  S++T +  N++ I   +D +      D+ 
Sbjct: 278 VNTNKIESGCCKIKLNNNNIV--SLVEDIVTSVSTYVENNDMDIIFDTDTEEKIIACDKD 335

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVS 744
            + ++   ++SN++ +  KG   I    +D  D  I SVK+NG  IPE++ K+VFNRFV 
Sbjct: 336 MIERVVLNLISNSVKYKQKGKGSIQVTVQDKEDRVIVSVKDNGIGIPENIQKNVFNRFVQ 395

Query: 745 NAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  +         G+GL++V+S I++H G++ I+S +   T I   +PS++
Sbjct: 396 SNRKEYDLTTCSSGIGLALVKSIIDMHDGNIQINSRENKGTEIIFELPSRK 446


>gi|119964150|ref|YP_947343.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
 gi|119951009|gb|ABM09920.1| putative signal transduction histidine kinase [Arthrobacter
           aurescens TC1]
          Length = 417

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 23/248 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L E  +     +  +   V  +S++LR+PL ++   T+ L+      + S    Y   
Sbjct: 144 RSLAESRQREAAIEAARRELVSWISHDLRTPLASMRAMTEALEDG----MASDVQGYYRK 199

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  +VND+L+L+ + AG ++L    + L DL+++    +A    +  IR+   
Sbjct: 200 IIGQTEQMTAMVNDLLELSKIQAGTLRLRAEPLDLYDLVSDALSDLAPLAAKRGIRLDGG 259

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNG 727
            D +  + VAD   L +    IL NA+ +S  GS V +   RD      G+ I +V++  
Sbjct: 260 GDRECMA-VADGPSLARAVRNILLNAIIYSPPGSDVHISVGRDRVGGSGGNAIIAVEDQC 318

Query: 728 SSIPEDMCKSVFN--------RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             IP++    +F         R  +   +G+  G G+GLS+V   +  HGG V++ + D 
Sbjct: 319 GGIPDEDLPHLFETGWQKDPARRTTEEMQGRYSGAGIGLSMVAGIVKAHGGSVTVDNVDG 378

Query: 780 GVTTINCR 787
           G     CR
Sbjct: 379 G-----CR 381


>gi|150014976|ref|YP_001307230.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149901441|gb|ABR32274.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 473

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 3/214 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+L K +  +  F+ +VS+ELRSP+T+I GF   +    +     K+  Y++ + +    
Sbjct: 237 ESLEKVENNRRDFISNVSHELRSPITSIKGFIAGIIDGVIP--RDKEGYYLDIVYSEIKR 294

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ND+LDL+ +++G +K N   I +N+L+     +   K+ E  I +K+    +   
Sbjct: 295 LTRLINDLLDLSAIESGKLKFNIRKIDINELIRLCVINNEQKIREKQIMLKIDLKDQNCY 354

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  + +Q+ + +L NA+ +      + +            + NNG  I ++  + ++
Sbjct: 355 VKADEDKTMQVITNLLDNAIKYCGNNGIIRISTYSKGSKVFVEIYNNGPKIADEEIRHIW 414

Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           NRF  S+  R  +   GLGL IV   I   G  V
Sbjct: 415 NRFYKSDKSRTNKVSTGLGLPIVRMIIMQQGEEV 448


>gi|300866672|ref|ZP_07111358.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335346|emb|CBN56518.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1013

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+ELR+PL  I+G+  +L+ S+   L+ K  + ++ I    + LL L+
Sbjct: 560 ANNAKSEFLANMSHELRTPLNGILGYAQILQRSE--PLSEKGHKGIDIIYQCGSHLLTLI 617

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILDL+ ++A  + L  + + L   L  V +    +  +  I     ++ +L   V AD
Sbjct: 618 NDILDLSKIEARKLDLYPAPLHLPSFLQNVIEINRIRAEQKGITFDYQANSQLPIGVYAD 677

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +RL Q+   +L NA+ F+ KGS V  K         F + + G+ +  +  + +F  F 
Sbjct: 678 EKRLRQVLINLLGNAIKFTDKGS-VTFKVEPIGQKIRFQIADTGTGMTSEQVEKIFLPFE 736

Query: 744 SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT-TINCRIPSKE 792
                + Q  G GLGL+I    + L G  +++ S   EG T +    +P  E
Sbjct: 737 QVGDTKKQAEGTGLGLAISHKIVALMGSEITVDSIPGEGSTFSFEVELPEAE 788


>gi|299538376|ref|ZP_07051659.1| sensor protein [Lysinibacillus fusiformis ZC1]
 gi|298725963|gb|EFI66555.1| sensor protein [Lysinibacillus fusiformis ZC1]
          Length = 591

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 166/351 (47%), Gaps = 31/351 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           +++ V  F  D  I LSNP A R + K   N+ S     ++        Y+  D      
Sbjct: 266 MTDAVITFNRDRTILLSNPPAERLMQKWFVNKGS-----QSAKPIPPELYHMLDH----- 315

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             +  F+D+   L+  +E+   S   ++I PL + + +   V V       R +TE++  
Sbjct: 316 --VLMFEDK---LEEEIEM-DGSYYTFTISPLYSGEMIRGAVAVI------RDMTEQH-- 361

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             + +++++ F+ +VS+ELR+P+  + G+++ L          ++++  + I   S  + 
Sbjct: 362 --RLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDQEERNEITKIIYDESKRMG 419

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+LDLA +++G M L    + +N     + Q  +    E ++R+   S+    + +
Sbjct: 420 RLVTDLLDLARMESGHMALYKDELPINSTFERITQKFSQVAKEKHVRLLFESEFNDEAMI 479

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  R+ Q+ + ++ NA+  + +GS V +K  ++      SV++ G  IP++    VF 
Sbjct: 480 NIDEDRIEQVLTNLVDNALRHTDEGS-VSVKVEQEPTFAKISVQDTGHGIPQEDLPYVFE 538

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF     A    + G GLGL+I  + +  H G++ + S  +  TT    +P
Sbjct: 539 RFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 589


>gi|297530123|ref|YP_003671398.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297253375|gb|ADI26821.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 457

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  +S+ELR+PLT + G+ D+ +   L     +++ Y+  I   +  +  +V D+ 
Sbjct: 236 RSEFLASISHELRTPLTYVKGYADIARRPHLS--EEQRANYMAIIYEEAEKIEKMVKDLF 293

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +LA ++    ++      L   L ++ + +     E ++ +     G + + + DRQR  
Sbjct: 294 ELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLSLVCQCPGSVMAAI-DRQRFE 352

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   +L NA  ++  G+TV +         + +V + G+ IP +    +F RF  V  +
Sbjct: 353 QVMINVLDNARKYAFSGTTVAVAVHLQKQGIVIAVSDEGTGIPPEDVPRIFERFYRVDKS 412

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 G GLGL+I +  +  HGG ++  S     TTI   +P
Sbjct: 413 RSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTIIMTLP 455


>gi|209809753|ref|YP_002265292.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208011316|emb|CAQ81766.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 578

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 124/245 (50%), Gaps = 16/245 (6%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  + EK  A   +++    FV  +++ELR+PL  ++G  +L++ +   ++   Q   + 
Sbjct: 198 ENTIKEKQRA-ENSEQATRDFVAMINHELRTPLNGLLGSAELMEDT---NITQYQQTLLM 253

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +  +L  ++ND+LD + ++AG+++L+ +      L+  ++Q    ++ E  +   V
Sbjct: 254 TIHQAGEMLRVIINDLLDFSKMNAGMLQLSITQFSPQILIQTIEQMFLHQIEETRLEFVV 313

Query: 672 -----ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
                + DG  G    D  R+ QI   ++ NA+ F+ +G      + +DN    F+V ++
Sbjct: 314 GIENTLPDGLSG----DIDRIQQILVNLIGNAIKFTKEGEIRFSASWKDNV-LCFTVSDS 368

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP D   ++F+ F  V N+ + Q  G GLGLSI +S I+   G +++ S     +  
Sbjct: 369 GCGIPLDKQSTLFDPFTQVDNSSQRQFEGTGLGLSICKSLIDKMEGTLTLESELGKGSVF 428

Query: 785 NCRIP 789
           +  IP
Sbjct: 429 SVEIP 433


>gi|94265927|ref|ZP_01289653.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453513|gb|EAT03921.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 12/230 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IG   LL       L+ +Q  Y + I +S   LL L+N IL
Sbjct: 166 KSEFLANMSHEIRTPMNGVIGMASLLLAE---DLSDEQRSYAQIIMSSGQALLELINQIL 222

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++AG ++L++      +L+ EV   +  +    NI +       + + V  D  RL
Sbjct: 223 DFSKIEAGRLELDHRPFSPRELVEEVAVLLRPQAAAQNIALTSEVSPDIPAIVEGDPVRL 282

Query: 688 LQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            Q+   ++ NA+ F+  G   +         A  +    F+VK++G  IP +    +F R
Sbjct: 283 RQVLLNLVGNAIKFTEVGGVAMELSPAPADPAAPHCSLHFAVKDSGIGIPVEKLDLLFQR 342

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  +   +  G GLGL+I    + L GG + + S +   +T    +P
Sbjct: 343 FQQVDGSTCRKYGGTGLGLAICRRLVELMGGEIGVESEEGKGSTFWFTVP 392


>gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus pseudofirmus OF4]
          Length = 593

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 111/217 (51%), Gaps = 4/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L+K ++++  FV +VS+EL++P+T+I GF++ L    +    +   +++  I   S  L 
Sbjct: 356 LKKLEQVRKDFVANVSHELKTPVTSIKGFSETLLDGAMAD-PAYMEKFLTIIHKESERLQ 414

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+ D+L+L+ ++    +LN+    L  ++ +  + +  K     I + + +   +    
Sbjct: 415 SLIQDLLELSKLEQHYFRLNWGRAELTKIVQDAVELLRPKAEAKEIALSLHAASSV-EMD 473

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +RL Q+   ++SNA+ ++     + +   +D+   +F+V +NG  I       +F R
Sbjct: 474 GDSERLKQVAINLISNAITYTPNHGEINVSVTQDHQSILFTVSDNGIGIESSELPRIFER 533

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           F  V  A      G GLGL+IV+  +  H G +S+ S
Sbjct: 534 FYRVDRARSRNSGGTGLGLAIVKHLVEAHNGKLSVES 570


>gi|257061154|ref|YP_003139042.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256591320|gb|ACV02207.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 626

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 128/248 (51%), Gaps = 37/248 (14%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ--YVEYISASSTIL 620
           + A+ +K+ F+   S+ELR+PL  IIG   +LK    G  +SK+ +  +++    ++  L
Sbjct: 388 QNANRLKSEFLATTSHELRTPLNGIIGCLHILKE---GYCDSKEEELEFLQQAEQAAVHL 444

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----------KQSIATKMHENNIRI 669
           L +++D+LDLA ++AG + ++   + L  LL+EV           + ++ TK++ ++I +
Sbjct: 445 LGIIDDVLDLAKIEAGKLSVSLEPVDLTSLLSEVINLQTITLQKKRLTLMTKINPHSIIV 504

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNN 726
           +           AD ++L Q+   +L NA+ F+ KG+  I     +N        +VK+ 
Sbjct: 505 Q-----------ADPKKLKQVILNVLGNAIKFTEKGNITIKTHIEENNHQKQVCITVKDT 553

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV--- 781
           G  I       +F  FV       R+  G GLGL+I  + + L GG++++SS  EG+   
Sbjct: 554 GIGIDIKQQDKLFRPFVMVDGSTTRKYSGTGLGLAISRNLMQLMGGNITLSS--EGIDLG 611

Query: 782 TTINCRIP 789
           TT+   +P
Sbjct: 612 TTVKICLP 619


>gi|184156899|ref|YP_001845238.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|183208493|gb|ACC55891.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
          Length = 906

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  SS  LL L+
Sbjct: 257 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRKSSAHLLALI 314

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 315 NDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGD 374

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 375 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 433

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 434 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 480


>gi|313681751|ref|YP_004059489.1| histidine kinase [Sulfuricurvum kujiense DSM 16994]
 gi|313154611|gb|ADR33289.1| histidine kinase [Sulfuricurvum kujiense DSM 16994]
          Length = 648

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 118/222 (53%), Gaps = 12/222 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K +++K+ F+ ++ +E R+P+  I+GF DLL  +   S +  Q++Y+  I  S+  L++ 
Sbjct: 156 KTEQLKSKFLANIGHEFRTPMNGILGFVDLLSKT---SPDDTQAEYIHSIQGSARNLMSN 212

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           + ++LDLA +  G + ++ S   +   + E+ +   +   +  + +    D KL ++ + 
Sbjct: 213 IENLLDLAQMQNGRLSVSKSEFNIVSEMEELARGCISSAADKGVGVLFFIDPKLPTYIIG 272

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           D +++ Q+ + + +NA+ F+ +G   TV +K  + N     +  F+VK+ G  I +    
Sbjct: 273 DIRKIKQVINNLYNNALKFTHQGGRITVEVKLLKRNTSGTCNLGFTVKDTGKGISKFELS 332

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           ++   FVS  H   R GVGL LS     I L GG + I+S +
Sbjct: 333 NITRPFVSGDHADNRLGVGLSLS--HGLIALMGGELKIASEE 372


>gi|302876207|ref|YP_003844840.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307686939|ref|ZP_07629385.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302579064|gb|ADL53076.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 547

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-----QYVEYISAS 616
           L + D IK  F  ++S+ELR+P TN+I     ++  KL    SK+S      Y + +  +
Sbjct: 280 LEEYDRIKTDFFANISHELRTP-TNVIFSALQVQELKLKKYLSKESCTEMYGYTKMMKQN 338

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL L+N+++D+  +D   +++N   I + +L+  +  S+A  + +  + +   ++ +
Sbjct: 339 CYRLLRLINNLIDITKIDTMYVEINEVNINIINLIENITMSVADYIEDKGLSLIFDTEVE 398

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D +++ +I   +LSNA+ F+  G  +++       +    VK+ G  IP++   
Sbjct: 399 EKVIACDPEKIERIMLNLLSNAVKFTPMGGNIMVNIEDATENVCIRVKDTGRGIPKEKLN 458

Query: 737 SVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           S+F RFV    +      G G+GLS+V+S + LHGG +S+ SS+   T     IP K
Sbjct: 459 SIFERFVQVDKSFTRDHEGSGIGLSLVKSLVELHGGTISVKSSEGYGTEFIIYIPCK 515


>gi|297565508|ref|YP_003684480.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296849957|gb|ADH62972.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 425

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 11/248 (4%)

Query: 552 ERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           E AL  +N     E+L K +  + + +  +++ELR+PLT + G  + ++      + S +
Sbjct: 179 ETALLARNFNRMAESLEKLETERKAMIADIAHELRTPLTIMQGRLEAIQDG----VASLE 234

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ +   + +L  LV D+  L+  DAG + L    + L  ++         +  +  
Sbjct: 235 MREIDRLHHQTRLLSRLVEDLRTLSLADAGRLTLERRPLDLCAVVQHTVAGFQGQAQDKG 294

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++++          AD  RL QI S +L NA+  +  G T+ ++      +    V + 
Sbjct: 295 IKLQLRLPSPPLEVEADPDRLTQIISNLLHNAVAHTPAGGTITVEVEARGKEVAVRVSDT 354

Query: 727 GSSIPEDMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE+    VF+RF  + A R  Q  G GLGL+IV++ + LHGG V   +   G    
Sbjct: 355 GPGIPEEALPRVFDRFFRAEASRSRQSGGSGLGLAIVKALVELHGGMVEAKNRSSGGAEF 414

Query: 785 NCRIPSKE 792
              +P  E
Sbjct: 415 RFLLPKLE 422


>gi|254464768|ref|ZP_05078179.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Rhodobacterales bacterium Y4I]
 gi|206685676|gb|EDZ46158.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Rhodobacterales bacterium Y4I]
          Length = 892

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 14/234 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVE 611
           R L E NE L    E K++F+  VS+ELR+P+T+I  F+++L+    G LN K Q  Y  
Sbjct: 652 RKLRETNEKLTLLSEQKDAFLSQVSHELRTPMTSIRAFSEILRDD--GQLNPKEQRHYAG 709

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   +  L  L+ND+LDL+ ++ G + LN +   L ++L+    +       ++  +KV
Sbjct: 710 IIHDETLRLTRLLNDLLDLSVLENGQVSLNMTAGTLPEVLDHALAAALAG---SDRPLKV 766

Query: 672 ISDGKLGSF--VADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGS 728
           I   +  +F   +D  RL Q+F  +++NA  +  ++   + + A    G       +NGS
Sbjct: 767 IRTPETETFRLSSDLDRLAQVFINLIANAQKYCDAEEPELTISATAAGGRLHIDFTDNGS 826

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +P +  + +F +F  VS    G   G GLGL+I    +   GG +       G
Sbjct: 827 GVPAEFRQMIFEKFSRVSPERAG---GAGLGLAICREVMQRLGGDICYLPGHSG 877


>gi|190574186|ref|YP_001972031.1| putative histidine kinase/response regulator fusion protein,
           regulation of pathogenicity factors [Stenotrophomonas
           maltophilia K279a]
 gi|190012108|emb|CAQ45731.1| putative histidine kinase/response regulator fusion protein,
           regulation of pathogenicity factors [Stenotrophomonas
           maltophilia K279a]
          Length = 883

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 113/230 (49%), Gaps = 11/230 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ALT      R+A+E K+ F+ ++S+E R+PL  + G T++L T++   L+ +Q + +  I
Sbjct: 341 ALTRAVAEARQANEAKSRFLANMSHEFRTPLNGLAGMTEVLATTR---LDDEQRECLNTI 397

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            AS+  LL LV ++LD++ ++AG +++ +    L D+L  +   +  +    ++  +V +
Sbjct: 398 QASTRSLLALVEEVLDISAIEAGKVRVEWHEFALADVLQAINLILTPQTRSKSLDYRVQV 457

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNG 727
            D      + D   L QI   ++ NA+ F+  G   +  ++ D          F + + G
Sbjct: 458 DDNVPPRLLGDAGHLQQILLNLMGNAVKFTDSGYVHLRVSSPDALGSERMRLRFEIVDTG 517

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             +P  +   +FN F        RR  G GLG +I +  +   GG V  +
Sbjct: 518 IGVPVALRGRLFNAFEQGDVGLARRHEGTGLGTAIAKGLVESMGGQVGYA 567


>gi|92116253|ref|YP_575982.1| histidine kinase [Nitrobacter hamburgensis X14]
 gi|91799147|gb|ABE61522.1| histidine kinase [Nitrobacter hamburgensis X14]
          Length = 450

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 10/239 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +E++  FV + S+ELR+PL  + GF D L+        ++  +++  + A +T + 
Sbjct: 207 LRRVEEMRADFVANASHELRTPLAALSGFIDTLQGPARDDAGAR-DRFLGIMHAQATRMA 265

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+L L+ V+        + + L  ++ +V   +     E  +RI+V          
Sbjct: 266 RLIDDLLSLSRVELSAHVRPDALVDLIPIVRQVVDGLEPLAAERQVRIEVELPQTPVMIC 325

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSI-PEDMC 735
            DR+ LL++F  ++ NA+ + + GS V++ +  D       +F  +V++ G  I PE + 
Sbjct: 326 GDREELLRLFENLIENALKYGASGSRVVVSSMMDVSLDGAPEFRVAVRDFGRGIAPEHLP 385

Query: 736 K--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +    F R  +   R Q  G GLGLS+V+  +N H G + I S      T     P  +
Sbjct: 386 RLTERFYRIDAGDSRAQ-GGTGLGLSLVKHILNRHRGRLLIESVPGHGATFTAGFPPAQ 443


>gi|310820597|ref|YP_003952955.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393669|gb|ADO71128.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 971

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 126/239 (52%), Gaps = 10/239 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  + E +R    +K+ F  +VS+ELR+PLT I+   + L      +      Q++  +
Sbjct: 308 ALDTQKELIR----LKSEFFDNVSHELRTPLTLILLSLESLLQRDPSAYPDSVRQHLATM 363

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL L+N++LDLA ++AG ++L Y  + L+ LL  +         +  + + ++ 
Sbjct: 364 ERSAHRLLKLINNLLDLAQMEAGKLRLRYQAVELHSLLTSLLSPFRVMAEKKGLTLTLVG 423

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PE 732
              +G    D +R+  +F  ++SNA+ F+ +GS V ++ + D+      V++ G  I P+
Sbjct: 424 QA-VGPIHGDVERIEVVFQNLVSNALKFTQQGS-VQVRVSEDSSSVFVEVEDTGPGIAPQ 481

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D+   +F+RF      G RR  G G+GL++V+  ++LH G + +SS      T   ++P
Sbjct: 482 DI-DVIFDRFAQADSTGTRRFGGTGIGLALVKETVDLHSGSIRVSSVVGKGATFRVQLP 539



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 105/248 (42%), Gaps = 19/248 (7%)

Query: 550 RAERALTEKNEALRKADEIKNS----FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           R E  L  ++ A+R A+  + +         ++E+R+PL  ++     L+ S LGS    
Sbjct: 704 RIEAQLRLRDAAVRAAENERLAATGLLTSGFAHEVRNPLNGLMNAMLPLRESILGSQVDP 763

Query: 606 QS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    ++ +    T + +L   +L        ++ +N     L   L+     +A K+ 
Sbjct: 764 DTTRAMLDVMEECGTRIRHLAESLLSFVRTSDRLVPVN-----LGASLDSTLSVLAWKIP 818

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +   + V+ D +       D   L Q++  ++ NA+        + +    D    + S
Sbjct: 819 PD---VLVVRDYQCDVPITGDPGSLNQVWVNLIDNALRAVGDKGQLRISTEHDGATAVVS 875

Query: 723 VKNNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + + G+ I PEDM + +F  F S    G+  G GLGL++    +  HGG + ++S     
Sbjct: 876 ITDTGTGIKPEDM-ERLFQPFFSTRAAGE--GTGLGLALCRRIVLRHGGLIQLTSEWGKG 932

Query: 782 TTINCRIP 789
           T    R+P
Sbjct: 933 TRCEVRLP 940


>gi|260551959|ref|ZP_05825821.1| sensor protein gacS [Acinetobacter sp. RUH2624]
 gi|260405362|gb|EEW98857.1| sensor protein gacS [Acinetobacter sp. RUH2624]
          Length = 935

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  SS  LL L+
Sbjct: 286 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRKSSAHLLALI 343

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 344 NDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNIPQEVIGD 403

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 404 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 462

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 509


>gi|220915654|ref|YP_002490958.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953508|gb|ACL63892.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 383

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 12/239 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLT--NIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           L E  EA+R  D+    F+   S+ELR+PLT   ++  +   +T +   +  +Q + +  
Sbjct: 148 LAEAREAVRSRDD----FLAVASHELRTPLTCVQLVAQSLARQTHEGQPVTGQQVERLHQ 203

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L  LV+ +LDLA +  G ++L  +   L++L+ EV       +      + V 
Sbjct: 204 LQRHVARLGELVSGLLDLAEMSRGALQLEPAPFDLSELVQEVAARFEPDVRRKGTALSVH 263

Query: 673 SDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI- 730
           + G + G +  DR+R+    + +L NA+ +  + S + + A+RD+   +  +++ G  I 
Sbjct: 264 APGPIPGRW--DRRRVADAIAAVLGNAVKYGGR-SPIEVTASRDDRRALVVIEDRGPGIA 320

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           PED  + VF RF   A      G+G+GL      +N HGG +++ S+       + R+P
Sbjct: 321 PEDQSR-VFERFERAAPVAHYPGLGVGLWTARQILNAHGGDIAVESASGKGARFSLRLP 378


>gi|160938607|ref|ZP_02085959.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438306|gb|EDP16065.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC
           BAA-613]
          Length = 738

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 12/247 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +     +KA ++K  F+  +S+E+R+PL+ IIG T +  T    S  ++    + 
Sbjct: 212 EQELKDALNNAQKAFKVKKEFLSCMSHEIRTPLSIIIGMTKIAATHLDDS--NRIEDCLS 269

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ SS  L+ ++ND+LD++ ++ G + +N+    L  LL  +  +I  +  E  ++ + 
Sbjct: 270 KITFSSRHLMTIINDVLDMSKIEEGKLSVNHEPFQLQQLLEPLVATIYAQAEEQGLKFEC 329

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGD--FIFSVKN 725
            I +     ++ D  R+ QI   +LSN++ F+ KG  V L+   A   +G     F  K+
Sbjct: 330 GIKNVPEAVYIGDCMRINQILLNLLSNSIKFTPKGGVVHLEVNPAPVVDGKTHLQFITKD 389

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  + ++  K +F  F   A  G  R   G GLG++I  + + L GG + + S     T
Sbjct: 390 TGIGMSDEYLKRIFKPF-EQADSGTSRKYGGTGLGMAITYNLVKLLGGSIQVESKLGEGT 448

Query: 783 TINCRIP 789
           T    +P
Sbjct: 449 TCTVVLP 455


>gi|146305216|ref|YP_001185681.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           ymp]
 gi|145573417|gb|ABP82949.1| Alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           ymp]
          Length = 598

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 5/239 (2%)

Query: 540 LTFVNVTD--SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           LT V V +  SV A   L +  E  R  + +++ F+   S+ELR+P+T +     LL+  
Sbjct: 349 LTPVQVREGGSVGAVMVLRDVTEQ-RAFERVRSEFILRASHELRTPITGMHMAFSLLRER 407

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  ++   +  +      L+ L++D+L+ +    G+  L      L  +L + +Q 
Sbjct: 408 LQVPAGGREQDLMRTVDEEMRRLVQLIDDLLNFSRYQNGLQTLQRVPCDLAVMLQQARQR 467

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              +  E  + I       L     D  +L ++   +LSNA+  S  G TV L+A R   
Sbjct: 468 FTDEASERGVTITCELHQPLPRLSLDEGQLHRLLDSLLSNALRHSDSGGTVTLQAHRHGE 527

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             I SV++ G  IP +    +F  FV    R  + GVGLGL++    + L GG + + S
Sbjct: 528 QVIVSVQDQGEGIPYEQQARIFEPFVQIGRR--KGGVGLGLALAREIVQLFGGQMGVRS 584


>gi|77920672|ref|YP_358487.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77546755|gb|ABA90317.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 477

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 39/251 (15%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASST 618
           E+ RK  +    F    S+ELR+PLT + G T++ L+ +K      K       IS    
Sbjct: 238 ESFRKIKQ----FSGDASHELRTPLTILKGETEVALRWAKTPEEFRKM-----LISGMEE 288

Query: 619 I--LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---------KQSIATKMHEN-- 665
           I  +  +++D+L LA  + G   L    + L+DLL E+          +SI   +H N  
Sbjct: 289 IDRMSRIIDDLLLLAKSEGGQKPLTIKEMSLSDLLQELYLQGRSLAQPKSIELVLHPNVT 348

Query: 666 -NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFS 722
             IRI           +AD+ RL Q+F  +++NA++++  G  V +  + D    + I  
Sbjct: 349 EEIRI-----------LADKMRLRQVFLNLIANAINYTPDGGQVEISLSVDGEQDEVIVK 397

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP +    +F+RF  V  A   +  G GLGL+IV+SF+  HGG V + S  E 
Sbjct: 398 VSDTGIGIPAEHLPHIFDRFYRVDRARNREDGGTGLGLAIVDSFVKAHGGRVEVFSVPEK 457

Query: 781 VTTINCRIPSK 791
            TT    +P K
Sbjct: 458 GTTFTVFLPRK 468


>gi|226315497|ref|YP_002775393.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226098447|dbj|BAH46889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 607

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 114/231 (49%), Gaps = 5/231 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ ++ +  FV +VS+ELR+PLT I  + + L    +      Q ++++  S+ +  ++ 
Sbjct: 370 QRLEQQRREFVANVSHELRTPLTTIKSYVEALLDGAVEEPELSQ-RFLKVTSSETERMIR 428

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LVND+L L+  D+  ++L+     LN LL+      +    +  +++ +    KL     
Sbjct: 429 LVNDLLQLSRFDSQGVRLHCKEADLNRLLHYAADRFSMFSEQQEVQLSLDMPSKLPLVYI 488

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFN 740
           D   + Q+   +LSNA+ ++ +G TV+L A  ++       S+ + G  IP    K +F 
Sbjct: 489 DLDAINQVLDNLLSNAIKYTPQGGTVVLMAKENHKQRRVQISITDTGIGIPSRDLKRIFE 548

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF  V  A    + G GLGL+I    +  HG  + I+S     TT+   +P
Sbjct: 549 RFYRVDKARSRGQGGTGLGLAIARELVQAHGADIEITSEWNVGTTVTFWVP 599


>gi|115371970|ref|ZP_01459282.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370935|gb|EAU69858.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 463

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  V+++LR+PL  +   T+LL  +       K  + +  ISA    L  +V D+LD  
Sbjct: 241 FLAGVAHDLRTPLNTLKLSTELLLRAPTPPPPEKLRESLLRISAQLDRLNRMVGDLLDQT 300

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG ++L      L  L+ EV +       ++ I + V  DG +     D  RL+Q+ 
Sbjct: 301 RIEAGNLELRLEDTDLCTLVREVAELHRPLSQQHQIELTV-PDGPV-PVRGDPTRLIQVL 358

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQ 750
           + +LSNA+ +S  G  V +   +   + + SV + G  IP    + +F  F  +A    +
Sbjct: 359 TNLLSNAIKYSPLGGRVRVLIEQSQEEVLLSVSDEGVGIPPGEYERIFAPFKRSASASAE 418

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G+GLGLS+    +  HGG++ + S +   +T   R+PS+
Sbjct: 419 LPGIGLGLSVSRRIVRAHGGNIEVVSQEGAGSTFRVRLPSQ 459


>gi|72384217|ref|YP_293571.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72123560|gb|AAZ65714.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 404

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 113/218 (51%), Gaps = 11/218 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+ELR+PL  I+GF  L+ +       S+Q+  ++ I  +   LL L+
Sbjct: 23  ANRAKSEFLSSMSHELRNPLNAILGFAQLMSSESPPPSPSQQAS-IDQILKAGWHLLELI 81

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIKVISDGKLGSFV- 681
           N++LDLA ++AG   L+   + + D+L+E    +  +  +  +  R  ++    L  FV 
Sbjct: 82  NEVLDLAKIEAGQASLSPEPVSVVDILHECHAMLEQQALKRAVCMRFPLLD---LPYFVR 138

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFN 740
           ADR RL QI   +LSNA+ ++    T  ++  +  GD I  SV++ G+ +  D    +F 
Sbjct: 139 ADRTRLKQILLNLLSNAIKYNRDQGTAEVQVTK--GDRIRVSVRDTGAGLAPDRLAQLFQ 196

Query: 741 RFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F    H  G   G G+GL + +    L GG + + S+
Sbjct: 197 PFNRLGHEAGSVEGTGIGLVVAKRLAELMGGTIGVEST 234


>gi|299139100|ref|ZP_07032276.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
 gi|298598780|gb|EFI54942.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
          Length = 459

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 126/226 (55%), Gaps = 15/226 (6%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTI 619
           L++ +  +  FV +VS+ELR+PLT+I+G+ +LL    +   ++ ++  ++ + I  ++  
Sbjct: 207 LQQMERTQKEFVANVSHELRTPLTSIMGYVELLIDDGNADANMTAQSREFFDAILKNAQR 266

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKL 677
           +  L  D+L +A VD+G  K+N + + +  LL E   + A+ + +++ R+++ +  D ++
Sbjct: 267 MGRLTEDLLVMAKVDSGEQKINPAPVRVAALLQE-SIAAASGLLKDDARLEIAAMVDTEV 325

Query: 678 GSFVADRQRLLQIFSKILSNAMDF--SSKGSTVILKAARDNGD---FIFSVKNNGSSIPE 732
              +AD   ++Q+ S ++ NA+++   + GS V++ A    G      FSV++ G+ I  
Sbjct: 326 ---MADTDAVVQVLSNLIENALNYGRGAHGSLVVMAAEMVAGPPSMVKFSVRDFGAGIAF 382

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  + +F RF     A   +  G GLGLSI +  +  HGG + + S
Sbjct: 383 EHRERIFERFYRADKARSRESGGTGLGLSIAKHLVESHGGTIWVES 428


>gi|260662553|ref|ZP_05863448.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
 gi|260553244|gb|EEX26187.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
          Length = 619

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 119/239 (49%), Gaps = 16/239 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K +  +  FV +VS+ELR+PLT++  + + L     G++N  +   +++  +S  +  +
Sbjct: 371 QKEERERKEFVSNVSHELRTPLTSVKSYVEALSD---GAINDPELAPRFLGVVSDETERM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------KQSIATKMHENNIRIKVI 672
           + ++ND+L L+ +D+G  KLN   + +N+L N +        K   A    +    ++ +
Sbjct: 428 IRMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYL 487

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L   + D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP 
Sbjct: 488 TKKDLWVEI-DTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPR 546

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F+RF  V  A   ++ G GLGL+I +  +NL GG + + S +   +T    +P
Sbjct: 547 KDLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|262198737|ref|YP_003269946.1| PAS/PAC sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262082084|gb|ACY18053.1| PAS/PAC sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 540

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 7/247 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD    E A  E   AL +++          S++L  PL  I  +++LL+  ++G L+ K
Sbjct: 288 TDITELEGARAEIQTALERSNRELAQIAHAASHDLVEPLRMITSYSELLQRRRVGQLDEK 347

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y  Y+   +  +  L++D+  L+++     +     + L ++L+EV+Q +A  M ++
Sbjct: 348 TIRYTNYMVEGAARIRQLIDDLGALSSISQEAQQPR--PVPLGEVLDEVQQVLAEPMRDS 405

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVK 724
              +     G+L   +ADR  L Q+F  +  N++ F S     I +   RD    + +V+
Sbjct: 406 GAEL---VHGELPEVLADRHHLAQLFRMLFDNSLKFRSADPPRIEVSGHRDGTMQVLAVR 462

Query: 725 NNGSSI-PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +NG     E     +F  F     R + +G G+GL++    +   GG + + SS     T
Sbjct: 463 DNGKGFDSEQYGARIFGMFQRLQGREEYQGTGIGLALARKIVERSGGRIWVESSPGAGAT 522

Query: 784 INCRIPS 790
               +P+
Sbjct: 523 FFFTLPA 529


>gi|189465971|ref|ZP_03014756.1| hypothetical protein BACINT_02335 [Bacteroides intestinalis DSM
           17393]
 gi|189434235|gb|EDV03220.1| hypothetical protein BACINT_02335 [Bacteroides intestinalis DSM
           17393]
          Length = 623

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 114/235 (48%), Gaps = 10/235 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + +S R++  + +K E   +A + KN F+ ++S+E+R+PL  I+GF+ +L +        
Sbjct: 373 LKESKRSQECMIQKAE---RAIKKKNMFLSNMSHEVRTPLNAIVGFSAVLSSDDDSFDED 429

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            + ++ E I  +S  LL L+NDILD +  +   +  N   I   D +   K+ + T    
Sbjct: 430 SRKEFCEIIKVNSFQLLKLINDILDFSDFENDNITFN---IRPYDAVKLCKEVVETVSAS 486

Query: 665 NNIRIKVISDGKLGSFVADRQ--RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + +++  D +L   V D    RL Q+   +L NA  F+ +GS V+     D     FS
Sbjct: 487 RKLEVELRFDTELSDLVMDTDDARLRQVLINLLVNATKFTKEGSIVLKLEMSDRNTAFFS 546

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           V + G  IP +    +F RF       Q  G GLGLSI +  +    G + + S+
Sbjct: 547 VTDTGCGIPLEKQDLIFERFEKLNDFAQ--GSGLGLSICKLIVTYMKGRLWVDSN 599


>gi|330816277|ref|YP_004359982.1| Phosphate regulon sensor protein PhoR [Burkholderia gladioli BSR3]
 gi|327368670|gb|AEA60026.1| Phosphate regulon sensor protein PhoR [Burkholderia gladioli BSR3]
          Length = 437

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 120/242 (49%), Gaps = 12/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT+    + + D ++  FV +VS+EL++PLT + GF + L+   L   + ++++Y++ + 
Sbjct: 193 LTQDITEVERTDAMRRDFVANVSHELKTPLTVLSGFLETLRELPLS--DEERARYLDMME 250

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKV 671
             +  +  +V D+L LA ++          + ++D+L    +V Q+++   HE +  I  
Sbjct: 251 QQAGRMRKIVTDLLVLAKLEGEGKPPTDKPVDMDDVLGHLEDVAQTLSAGHHEISFEI-- 308

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  L S       +      +++NA+ ++ +G  + +   RD    +FSVK++G  IP
Sbjct: 309 --DDTL-SVTGAETEIFSALGNLVTNAVRYTPEGGKIRVCWRRDGSQAVFSVKDSGFGIP 365

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +  RF  V  +      G GLGL+IV+  +  H G + I S +   +T   R P
Sbjct: 366 AEDLPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDGQLLIQSEEGRGSTFTARFP 425

Query: 790 SK 791
           ++
Sbjct: 426 AQ 427


>gi|325921173|ref|ZP_08183041.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548343|gb|EGD19329.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 482

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 12/244 (4%)

Query: 555 LTEKNEALRKADEIK---NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           L +  E++R+  E K     +VQ +++E++SPL  I G ++LL         + +  +V 
Sbjct: 242 LGQALESMRRKLEGKAYVEQYVQSLTHEMKSPLAAIRGASELLSEPLP---EADRQHFVA 298

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I A    L   ++ +L LA V+          I +  LL     ++  +     +R+++
Sbjct: 299 SIRAQELRLTETIDKLLALAEVEQHGWLQKRERIAVAGLLQAAVDAVLPRATAAGMRVEI 358

Query: 672 ISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +  +       + D   L Q    +L NA+ FS +GSTV L+    +G   +SV++ GS
Sbjct: 359 DATTQTAREQYVLGDGFLLRQALINLLENAIAFSPEGSTVQLRTQVHDGHLQWSVEDRGS 418

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +P+   + VF RF S A    GQR   GLGL  V     LHGG V++ + + G      
Sbjct: 419 GVPDYALERVFERFYSLARPQTGQRSS-GLGLPFVREVARLHGGEVALGNREGGGAVATL 477

Query: 787 RIPS 790
           R+P+
Sbjct: 478 RLPA 481


>gi|310641218|ref|YP_003945976.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309246168|gb|ADO55735.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 600

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 21/242 (8%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A+R+ + +++ FV +VS+EL++P+  + GF + L    +    + +S +++ I   S  L
Sbjct: 361 AIRRLENMRSEFVANVSHELKTPIAAVKGFAETLLGGGVKDEETARS-FLQIIYDESERL 419

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----RIKVISDGK 676
             L+ DIL+L+ +++    L+ S I ++  +    +S+  K+  NN+    RI +  D  
Sbjct: 420 NRLIGDILELSKIESKRSPLDCSPIHISSFI----ESLLEKL--NNVAAKKRITLHMDIP 473

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNG--DFIFSVKNNGSSI 730
              F+ AD  +L QIF  +LSN ++++  G  V +K     RDN     +F+V + G  I
Sbjct: 474 DELFMEADEDKLQQIFLNLLSNGINYTLDGGKVKIKVITLQRDNDTEKVVFTVSDTGIGI 533

Query: 731 PEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           P+     +F RF     +G+ R   G GLGLSIV+  ++LH G +S+ S     TT    
Sbjct: 534 PKKDLPRIFERFY-RVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVE 592

Query: 788 IP 789
           +P
Sbjct: 593 LP 594


>gi|291458231|ref|ZP_06597621.1| sensory box histidine kinase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418764|gb|EFE92483.1| sensory box histidine kinase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 471

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           +E + KADE +  F+ +VS++ RSPLT+I G+ + +    +      + +Y++ +   + 
Sbjct: 233 SEEIGKADEYQRQFIANVSHDFRSPLTSIKGYLEAILDGTIPP--EMERKYLQRLIVETE 290

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L   +L L +V+     L  S+  +N ++  V +S      +  I  ++    K  
Sbjct: 291 RLEKLTGSLLSLNSVEQKGF-LIRSSFDVNQVIKSVCESFEMSCQKKRITFELTFSEKRE 349

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD  R+ Q+   ++ NA+ FS + S + +++         SVK++G  IP+     +
Sbjct: 350 PVYADHARIQQVLYNLIDNALKFSGENSVIGIRSGLRGTKVFVSVKDSGIGIPKKDLTKI 409

Query: 739 FNRFV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++RF  ++  RG+ ++G GLGLSIV+S I+ HG ++   S+ EGV T
Sbjct: 410 WDRFYKTDLSRGRDKQGTGLGLSIVKSIIHAHGENIDCVST-EGVGT 455


>gi|240142103|ref|YP_002966613.1| putative multi-sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240012047|gb|ACS43272.1| putative multi-sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 1223

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 179/423 (42%), Gaps = 41/423 (9%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE-------------TIDHL 443
           G+ L + + +NP G   W+     V  D+ T +     ++               T+D +
Sbjct: 549 GRDLVLEIRTNPLGDGGWVM----VTTDVTTAHRNAEALEKSEAVLKEKSAALEITLDAI 604

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT--CSRYYNESDGWDL-- 499
            +G+     DGR+ ++N     L     + L PG H          + YY ES   +   
Sbjct: 605 DQGILTVAADGRVAVANRRLPELMGVSPDTLLPGRHFGGAVRERFAAGYYPESAEVESRI 664

Query: 500 --FAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             +   + S+  +   L  T+ + S      +E    PL     +LT  +VT    AE A
Sbjct: 665 GEYERFVASWPAD---LPPTVRVGSGPDGREIETFTRPLAGGGIVLTARDVTRQRAAESA 721

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    EA    +  K++FV  +S+E+R+PL  +IG  ++L  +    L+ +Q +Y+  I 
Sbjct: 722 LEAAKEAAEAGNRAKSTFVATMSHEIRTPLNGVIGMAEVLSGT---DLDDRQREYLATIR 778

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
                LL++V+DILD + ++AG  +     + +      V   I       ++ + + I 
Sbjct: 779 ECGDALLSIVSDILDFSKLEAGRTEFVQRPVDVEAGAKSVLDIIGATAAGGDVVVGLEIR 838

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
           D      + D  RL Q+   +  NA+ F+  G  V+++ +  +GD       + ++++G+
Sbjct: 839 DDVPRRVLTDGSRLRQVLLNLAGNAVKFTGAGGEVLIRLSM-SGDGARRMLRYEIEDSGT 897

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +    +F  F  + N     + G GLGL+I    +   GG +    +D+G      
Sbjct: 898 PIAAEKRPLLFREFSQLGNGFIAGQGGTGLGLAISRRIVEGLGGSIGYKPTDDGTNVFWF 957

Query: 787 RIP 789
            IP
Sbjct: 958 EIP 960


>gi|240146930|ref|ZP_04745531.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
 gi|257200913|gb|EEU99197.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
          Length = 478

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L   +E +  FV +VS++ RSPLT+I G+ + +    +      Q +Y+  I   +  L 
Sbjct: 242 LNTLEEDQRKFVSNVSHDFRSPLTSIKGYVEAMLDGTIPV--EMQDKYLNIILFETERLN 299

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L   +L+L    +  + L+ ++  +N  +    Q+      E +I   +I  G+     
Sbjct: 300 KLTKSLLELNKFGSHGVMLDITSFDINHTIRMTVQTFEGTCMEKHISFNLILSGETLFVS 359

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  ++ Q+   ++ NA+ FS   S++ ++    N     SVK+ G  IP+D  K +++R
Sbjct: 360 ADFSKIQQVLYNLIDNALKFSHANSSITIETTEKNEKVFVSVKDTGIGIPKDSIKKIWDR 419

Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  ++  RG+ ++G GLGLSIV+  I  HG +++  S+ EGV T
Sbjct: 420 FYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENINCIST-EGVGT 462


>gi|193076366|gb|ABO11027.2| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
           17978]
          Length = 935

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  SS  LL L+
Sbjct: 286 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRKSSAHLLALI 343

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 344 NDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGD 403

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 404 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 462

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 509


>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 929

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 130/258 (50%), Gaps = 18/258 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V +  S    R   E+ EA  +A   K+ F+ ++S+E+R+P+  I+G T+LL  ++L   
Sbjct: 259 VQLMQSGEEMRIAKEQAEASSRA---KSEFLANMSHEIRTPMNGILGMTELLMDTEL--- 312

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q  Y+  +  S+  L++++NDILD + ++ G ++      +L  +L +  ++++ + 
Sbjct: 313 NPQQFDYLRSVKVSAENLMDIINDILDFSKIEVGRLETEAIPFMLRSMLGQTLRTLSVRA 372

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDF 719
            +  + +    D  L  + + D  RL Q+   +  NA+ F+ +G   +L + +    G  
Sbjct: 373 AQKGLELVFQVDPDLPDTLIGDPGRLRQVLLNLAGNAVKFTDQGEVELLVSKQQELPGKE 432

Query: 720 I---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           +   F V++ G  I  +  + +F  F        ++  G GLGL+I    + L GG + +
Sbjct: 433 LLLRFEVRDRGIGISPEHQQRIFAPFEQADLSTTKKYGGTGLGLAISSRLVQLMGGEIGL 492

Query: 775 SS-SDEGVT---TINCRI 788
            S + +G T   T+ C++
Sbjct: 493 ESVAGQGSTFWFTLRCQV 510


>gi|167590124|ref|ZP_02382512.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ubonensis Bu]
          Length = 861

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 9/257 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++  V+VT   R  R L E   A   A+  K+SF+  +S+E+R+PL  I+G  +LL+ S 
Sbjct: 474 IVAAVDVTAKRRIVRKLEEAVRAADSANAAKSSFLAAMSHEIRTPLNVILGNLELLERS- 532

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L+  Q   V+ +  S+  LL LVNDILD + ++AG M +      +  ++     + 
Sbjct: 533 --ALDVSQHGRVQTLRTSAGSLLALVNDILDFSKIEAGAMTVESIEFGVMTVIERELSAF 590

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG---STVILKAAR 714
           A       +++    D  +   +  D  R  Q+F  +L+NA+ F+ +G   + V +  A 
Sbjct: 591 APIAKAKGLQLFCEMDASISQRMRGDPMRFAQVFGNLLNNAIKFTDEGRVTARVSIVDAC 650

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
              +    V++ G  I  +    +F  F        RR  G GLGL++    +   GG +
Sbjct: 651 GAPELAVEVEDTGIGISPEHQHKLFKAFSQVDASITRRYGGTGLGLALCARLVTAMGGRI 710

Query: 773 SISSSDEGVTTINCRIP 789
           S++S     +    R+P
Sbjct: 711 SVASEPGAGSCFTVRLP 727


>gi|153936373|ref|YP_001387038.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|152932287|gb|ABS37786.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 477

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 128/231 (55%), Gaps = 16/231 (6%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ----SQYVEYISASSTILLNLVNDI 627
           F  ++S++L++P+  I     ++  +    L++K+     +Y+  I  +   LL LVN+I
Sbjct: 222 FYANISHDLKTPINIIYSAIQVMNMA----LDNKKIDTIEKYIGVIKQNCYRLLRLVNNI 277

Query: 628 LDLATVDAGI--MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++   +++G   +KLN + IV   L+ ++  S++T +  N++ I   +D +      D+ 
Sbjct: 278 VNTNKIESGCCKIKLNNNNIV--SLVEDIVTSVSTYVENNDMDIIFDTDTEEKIIACDKD 335

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVS 744
            + ++   ++SN++ +  KG   I    +D  D  I SVK+NG  IPE++ K+VFNRFV 
Sbjct: 336 MIERVVLNLISNSVKYKQKGKGSIQVTVQDKEDRVIVSVKDNGIGIPENIQKNVFNRFVQ 395

Query: 745 NAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  +         G+GL++V+S I++H G++ I+S +   T I   +PS++
Sbjct: 396 SNRKEYDLTTCSSGIGLALVKSIIDMHDGNIQINSRENKGTEIIFELPSRK 446


>gi|91224745|ref|ZP_01260005.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|269964372|ref|ZP_06178614.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|91190291|gb|EAS76560.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|269830869|gb|EEZ85086.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 785

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +N+A R A + K++F+  +S+ELR+P+  ++G + ++      +      +++  I  S 
Sbjct: 260 RNKAERAA-KAKSNFLAAMSHELRTPMNGVLGLSQMIAEE---TKEPTTKEHIRVILDSG 315

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GK 676
             L+ ++NDILD + V+   ++   +   L+ +L+ V  +I   + E NI + + ++  +
Sbjct: 316 QHLMTILNDILDFSKVEENKLEFEQAKFKLDQVLSPVCSAIKPLVDEKNIELILENEVSE 375

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDM 734
              F  D  RL QI   +  NA+ F+++G  V+++   D  +   +  V + G  I  D 
Sbjct: 376 YTEFTGDCARLRQILFNLAGNAVKFTNEGH-VLVRTELDESNQLLVMRVSDTGIGIAPDK 434

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + +FN F        RR  G GLGL+IV+   +L GGH+++ S  EGV
Sbjct: 435 HEHIFNSFEQADSSTTRRFGGTGLGLAIVKKLTDLMGGHITLKSI-EGV 482


>gi|312131620|ref|YP_003998960.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311908166|gb|ADQ18607.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1299

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 126/240 (52%), Gaps = 15/240 (6%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            E+ + +++ D +K  F  +VS+E R+PL+ I+  T + K  +L + ++ +  +++ +  +
Sbjct: 799  EEAKRIKELDLLKTKFFTNVSHEFRTPLSLIL--TPVEKLVQLET-DAHKRMHLDLVYRN 855

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-----KMHENNIRIKV 671
            +  LLNLVN +LD   +D   + L+    V  D++ E+K  + +     +  E   +I++
Sbjct: 856  ARRLLNLVNQLLDFRKIDTRSLVLH---AVEGDIIAELKDHVRSFRDLAESKEIQYQIQI 912

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             ++     F  D  +L +I   +LSNA  F+  G  V  ++  D       V +NG  IP
Sbjct: 913  PAEPFTCRF--DHDKLERIIFNLLSNAFKFTPVGGRVFFESTIDGKYLNVKVGDNGMGIP 970

Query: 732  EDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +D  + +F+R+  +        +G G+GLSI + +++L GG +S+ S     +T N RIP
Sbjct: 971  DDSLQRIFDRYFQDDLLKSVLNQGSGIGLSITKEYVSLMGGEISVESKVGMGSTFNVRIP 1030


>gi|167625694|ref|YP_001675988.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           halifaxensis HAW-EB4]
 gi|167355716|gb|ABZ78329.1| PAS/PAC sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 1203

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 166/354 (46%), Gaps = 24/354 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDG 496
            +D + +G+  +  D    + NPA+ S+   + N   P   + I  +     R   E   
Sbjct: 557 AMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKVNEF-PALVSTIDELIHPDDRIRVEEYR 615

Query: 497 WDLFAAIITSFDDERKSLQGTLE---LLSDS-VLEYSIIPLPNAQTML-TFVNVTDSVRA 551
               A  + ++D E + L    E   LLS   V+E++  P    + M+ T  ++T   R 
Sbjct: 616 EQYLANPVGAYDIEFRMLGKNGEYHWLLSRGRVVEFT--PKKQPKRMVGTHKDITRHKRN 673

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E A+ E  +    A+  K+ F+ ++S+E+R+ +  IIG   +L+ ++  SL  +Q  Y+E
Sbjct: 674 EVAMLEAKQDAEMANLYKSEFLANMSHEIRTRMNAIIG---MLQLAQRTSLTPQQKDYLE 730

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S+  LL ++NDILD + ++AG ++L      L+ +L+      A K  E  + + +
Sbjct: 731 KAGFSAHSLLRIINDILDFSKIEAGKLELERIGFPLDKVLDHALDINALKAQEKGVELLL 790

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVK 724
            +    G  +  D  RL Q+   +LSNA+ F+  G   +     D G+        F V+
Sbjct: 791 YAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIEL--GCEDVGERDHRITLKFWVR 848

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + G  I ++   ++F+ F        R+  G GLGLSI +  +++ GG + + S
Sbjct: 849 DTGIGISKEQQATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVES 902


>gi|167648196|ref|YP_001685859.1| osmosensitive K+ channel signal transduction histidine kinase
           [Caulobacter sp. K31]
 gi|167350626|gb|ABZ73361.1| osmosensitive K+ channel signal transduction histidine kinase
           [Caulobacter sp. K31]
          Length = 894

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 3/219 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E LR+AD  +++ +  +S++LR+PL+ ++G +  L         + ++  +  I   +  
Sbjct: 654 ETLRRADRFRSALLNSISHDLRTPLSTVLGASSTLTEYGDKMEPAVRADLMVSIREEAER 713

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L   V ++LD+  ++ G ++L    I + D+L      +  ++    +     S+  L  
Sbjct: 714 LNRYVANLLDMTRLEGGALRLRNDWIDVRDVLGAAADRVTRRLGGRPLTRDFPSE--LSL 771

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD   L Q+   IL NA+ +S  G+ + + A  D G+ + S+++ G  IP    + VF
Sbjct: 772 VRADASLLEQVVVNILENAIAYSPPGAQIEMAAYEDRGNIVISIEDEGRGIPPAELERVF 831

Query: 740 NRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
            +F        R  GVGLGLSI + FI+   G ++ +S 
Sbjct: 832 EKFRRMEEPTDRTGGVGLGLSIAKGFIDAMNGRIAAASP 870


>gi|160880960|ref|YP_001559928.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160429626|gb|ABX43189.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 467

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 119/228 (52%), Gaps = 13/228 (5%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQYVEYISASSTILLNLV 624
           ++  F  + S+EL++P+T+I G+T+LL    LG      +   ++++ I A +  + NL+
Sbjct: 241 VRQEFFSNASHELKTPITSIRGYTELL----LGGFINDEATSEEFMKRILAETESMTNLI 296

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDIL ++ ++    ++  + I +  LL ++ +++     +  + ++ +    +    A++
Sbjct: 297 NDILLISRLETRDYEIETTEIRMAMLLQDIIKTLEPIAAKQEVELQTVCKPVIVR--ANK 354

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           Q L ++   ++ NA+ ++     V +       D +  VK+ G  IP+D    VF RF  
Sbjct: 355 QHLRELLLNLIGNAIKYNKPNGMVYVTITTIGRDLLIEVKDTGIGIPKDSLVRVFERFY- 413

Query: 745 NAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +G+ R   G GLGLSIV+  +N +GG++++ S     +T   R+P
Sbjct: 414 RVDKGRSRKVDGTGLGLSIVKHIVNYYGGNITLDSKINVGSTFTVRLP 461


>gi|56420224|ref|YP_147542.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380066|dbj|BAD75974.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 457

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  +S+ELR+PLT + G+ D+ +   L     +++ Y+  I   +  +  +V D+ 
Sbjct: 236 RSEFLASISHELRTPLTYVKGYADIARRPHLS--EEQRANYMAIIYEEAEKIEKMVKDLF 293

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +LA ++    ++      L   L ++ + +     E ++ +     G + + + DRQR  
Sbjct: 294 ELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLSLVCQCPGSVMAAI-DRQRFE 352

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   +L NA  ++  G+TV +         + +V + G+ IP +    +F RF  V  +
Sbjct: 353 QVMINVLDNARKYAFSGTTVAVAVHLQKQGIVIAVSDEGTGIPPEDVPRIFERFYRVDKS 412

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 G GLGL+I +  +  HGG ++  S     TTI   +P
Sbjct: 413 RSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTILITLP 455


>gi|116750530|ref|YP_847217.1| sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116699594|gb|ABK18782.1| putative sensor with HAMP domain [Syntrophobacter fumaroxidans
           MPOB]
          Length = 485

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 122/235 (51%), Gaps = 6/235 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  E    L + + +++ F+  +S+E+R+PLT+I    +L+    +G +N +Q ++++  
Sbjct: 240 AFNEMAARLAEEERMRSDFISMLSHEIRTPLTSIRESVNLIVEEVVGEINERQRRFLQIA 299

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S     + +L+N ++ ++ ++AG + +    +   + +      +        I I+   
Sbjct: 300 SDEIQRITSLLNHLMQVSRLEAGAVSIRPRPLDAAEFVAGSIHRVTPAAEAKGISIRTEI 359

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSS 729
              +   + D + L Q+   +L NA+ FS  G+ V++KA    A+   +  FSV ++G  
Sbjct: 360 APGIPRAMGDPENLQQVLLNLLGNAIKFSPPGTDVVVKAEFDPAKSGSNLTFSVSDSGPG 419

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVT 782
           IP++    VF+++  ++  R +  GVGLGLSI +  +  HGG V +SS + EG T
Sbjct: 420 IPDEELTLVFHKYYRASGVRDEVDGVGLGLSISKHIVEAHGGRVWVSSRTGEGCT 474


>gi|329956790|ref|ZP_08297359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328523829|gb|EGF50916.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 479

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 120/216 (55%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+ +++G+LN +Q Q  + I  ++  LL
Sbjct: 251 FKELDTAKTTFISTISHELKTPISAILMSLQLLEDNRVGALNEEQEQLSKSIRENADRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            +  ++L++  V+AG +++        +L+    ++   +  + NI+I+V   + K+   
Sbjct: 311 GITGELLNMTQVEAGKLQMIPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKMPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   V++ A +++      V++ G  I     +S+F+
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKQEDNFVELYVQDFGKGIDPRYHQSIFD 430

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 431 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVRS 465


>gi|298246762|ref|ZP_06970567.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549421|gb|EFH83287.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 863

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLG------SLNSKQSQYV 610
           N A ++ ++ K++F+   S+EL++PLT +     LL  + +K G      +L+S ++Q +
Sbjct: 618 NSARKELEQRKDAFISTASHELKTPLTAMKLQAILLHRQLAKQGLQASAPTLSSMETQII 677

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +        +  LV ++LD++ + A  ++    T+ L+ LL+EV  ++      + I   
Sbjct: 678 K--------VTRLVEELLDVSKIQADRLEYLQETVGLDALLHEVVDTMQPIHATHTI--- 726

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V+      S V D+ RL Q+F  ++SNA+ +S    TV +  +         V ++G  I
Sbjct: 727 VVRGAAPCSLVGDKDRLGQVFINLISNAIKYSPGAETVEIDLSASEETVAVRVHDHGLGI 786

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P   C  +F RF       Q+   G+G+GL IV   +  HGG +++ S     +T    +
Sbjct: 787 PRAQCDKIFERFYRATDPNQKAIPGLGMGLYIVAEIVRHHGGTLTVESEVGKGSTFTVTL 846

Query: 789 PSK 791
           P K
Sbjct: 847 PCK 849


>gi|266619278|ref|ZP_06112213.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288869195|gb|EFD01494.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 875

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 132/265 (49%), Gaps = 12/265 (4%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y +  L   Q +  F + T+ VR+ + L E      +A+  K+ F+  +S+E+R+PL  I
Sbjct: 319 YRVEDLKTPQLITVFSDRTEEVRSRQILQEAMTNAEQANMAKSEFLSRMSHEIRTPLNAI 378

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T +   + +    ++    +  I+ SS  LL L+ND+LD++ +++  M L      +
Sbjct: 379 IGMTTI--AAAVVRDPARVEDCLSKITFSSRHLLMLINDVLDMSKIESRSMILQQEPFDM 436

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +++N    ++  +     I  +   +  G+   F+ D  RL QI   + SNA+ F+  G
Sbjct: 437 FEIINGFVSTVYAQTKAKGIEFQETMEGFGEDAIFIGDSLRLNQILFNLSSNAVKFTPPG 496

Query: 706 STVILKAARDNG----DFI-FSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQ-RRGVGLGL 758
             + L+ +R  G    D I F++ + G  + ++  + VF  F  ++A   +   G GLG+
Sbjct: 497 GKIRLEVSRYRGRNTADMIRFTLSDTGIGMTKEAVERVFQPFEQADASIAKLYGGTGLGM 556

Query: 759 SIVESFINLHGGHVSISSSDEGVTT 783
           SI  + I L GG + +  S+ GV T
Sbjct: 557 SITRNLITLMGGCIRV-DSEPGVGT 580


>gi|239503589|ref|ZP_04662899.1| Signal transduction histidine kinase [Acinetobacter baumannii
           AB900]
          Length = 1157

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 135/261 (51%), Gaps = 8/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +       + L +   A  +A++ K+ +V  +S+ELR+PL +I+G++ LL+ 
Sbjct: 655 QTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 714

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  S   K +  V  IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q
Sbjct: 715 QEQLSEQGKMALGV--ISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 772

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  + N++        L  +V  D++RL Q+   +L NA+ F++ G T+ LK    
Sbjct: 773 MFQPQFEQKNLQFVYEIGDNLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 831

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I E   + +FN F   SN  +G   G GLGL IV+  ++L GG +S
Sbjct: 832 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLS 891

Query: 774 ISSS-DEGVT-TINCRIPSKE 792
           ++S  ++G    I   +PSKE
Sbjct: 892 VTSQLNQGSQFKIKFYLPSKE 912


>gi|255093477|ref|ZP_05322955.1| putative sensor histidine kinase [Clostridium difficile CIP 107932]
          Length = 908

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 166/368 (45%), Gaps = 25/368 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY---NESDG 496
           ID L +G+ +   D  I  +N +F  +           T+I +I  +  +     N  + 
Sbjct: 525 IDILPDGICLLKEDLSINYANKSFLDML--------AFTNIDDIKDSNIKLLMNANTEEK 576

Query: 497 WDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNA--QTMLTFVNVTDSVRAE 552
                 +    ++ R  L    EL++  D ++E  +  LP A   T    + + D V  +
Sbjct: 577 MKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALPFAIYNTRYIMLIIKDLVHKK 636

Query: 553 RALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKLGSLNSK 605
            +   + E L   K D+IK  F  ++S+EL++PL N+I  ++ L     +  K+   N+ 
Sbjct: 637 YSEQAEKELLERFKTDKIKTEFFANMSHELKTPL-NVISSSNQLVDSFYRNEKIKDYNNN 695

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              +V+ +  SS  L  L+N+I+DL  +++G   L  +   +  ++ ++  +I       
Sbjct: 696 IKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALRK 755

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +I+I   +D +  +   D+  + +I   +LSN + F+  G  + +         I SVK+
Sbjct: 756 DIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDKVIISVKD 815

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D  + +F  F  V         G G+GL+IV++ ++LHGG + + S     T 
Sbjct: 816 TGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKGTE 875

Query: 784 INCRIPSK 791
               +P K
Sbjct: 876 FLISLPMK 883


>gi|218264345|ref|ZP_03478202.1| hypothetical protein PRABACTJOHN_03893 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222076|gb|EEC94726.1| hypothetical protein PRABACTJOHN_03893 [Parabacteroides johnsonii
           DSM 18315]
          Length = 654

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 122/231 (52%), Gaps = 10/231 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +AD +K++F+ ++++E+R+PL  I+GF+ ++      S    + ++ + I  ++ +
Sbjct: 432 EKAEEADHLKSAFLANMNHEIRTPLNAIVGFSQVIAEE---SDIETRREFAKIIQNNNEL 488

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ D+LD++ +++  +    +   L  L+ ++   ++ ++ E N+ ++ + D    +
Sbjct: 489 LQRLIEDVLDISKIESNTLTFVLTDQDLQALMKDLYSIMSLRISE-NVELQ-LDDCPRFT 546

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              DR RL Q+ + +L+NA+  + +G      K A   G+  F V + G  IPED  + V
Sbjct: 547 LRTDRNRLTQVLANLLTNAIKHTHEGYIRFGYKVA--AGEICFYVADTGEGIPEDQLEHV 604

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RFV         GVGLGL+I ++ +   GG + + S     +T +   P
Sbjct: 605 FDRFVKLTE--WTTGVGLGLAISKALVAKLGGRMEVCSKQGEGSTFSVIFP 653


>gi|218247510|ref|YP_002372881.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218167988|gb|ACK66725.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 626

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 128/248 (51%), Gaps = 37/248 (14%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ--YVEYISASSTIL 620
           + A+ +K+ F+   S+ELR+PL  IIG   +LK    G  +SK+ +  +++    ++  L
Sbjct: 388 QNANRLKSEFLATTSHELRTPLNGIIGCLHILKE---GYCDSKEEELEFLQQAEQAAVHL 444

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----------KQSIATKMHENNIRI 669
           L +++D+LDLA ++AG + ++   + L  LL+EV           + ++ TK++ ++I +
Sbjct: 445 LGIIDDVLDLAKIEAGKLSVSLEPVDLTSLLSEVINLQTITLQKKRLTLMTKINPHSIIV 504

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNN 726
           +           AD ++L Q+   +L NA+ F+ KG+  I     +N        +VK+ 
Sbjct: 505 Q-----------ADPKKLKQVILNVLGNAIKFTEKGNITIKTHIEENNHQKQVCITVKDT 553

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV--- 781
           G  I       +F  FV       R+  G GLGL+I  + + L GG++++SS  EG+   
Sbjct: 554 GIGIDIKQQDKLFRPFVMVDGSTTRKYSGTGLGLAISRNLMQLMGGNITLSS--EGIDLG 611

Query: 782 TTINCRIP 789
           TT+   +P
Sbjct: 612 TTVKICLP 619


>gi|159897332|ref|YP_001543579.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890371|gb|ABX03451.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 399

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 131/303 (43%), Gaps = 38/303 (12%)

Query: 510 ERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            R   Q TL+ +LS+  +     PLP +  ++   ++T     ERA              
Sbjct: 113 RRDPQQVTLQPVLSNRTIRIWCEPLPESGALILARDLTQLSLLERA-------------- 158

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +   V +VS+ELR+PL +I    + L T     L  +    +  +      ++ LV+++ 
Sbjct: 159 RRDLVANVSHELRTPLASIKLLVETLATQPPPELAQR---MLGQVDTELDAVMQLVDELH 215

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +L+ +++G   L      + D++      I  +    ++R+ V     L     DR R+ 
Sbjct: 216 ELSQIESGRTALQLQPTPVEDIVERANDRIQPQAKRKDLRVAVTIAPDLPEVYVDRDRIS 275

Query: 689 QIFSKILSNAMDFSSKGSTVILKAA----------------RDNGDFIFSVKNNGSSIPE 732
           Q+   +L NA+ ++  G T+ ++A                   N   I ++ + G+ IP 
Sbjct: 276 QVLLNLLHNAVKWTDAGGTITIEAGLRSRSELGHHLSRMLEPSNRWVIMAIHDTGAGIPA 335

Query: 733 DMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F RF     R + RGV   GLGL+IV+  +  HGG V ++SS+   +T    +P
Sbjct: 336 EAIPRIFERFY-KVDRARTRGVGGTGLGLAIVKHLVEGHGGVVWVASSEGRGSTFTVALP 394

Query: 790 SKE 792
             E
Sbjct: 395 VVE 397


>gi|117918935|ref|YP_868127.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117611267|gb|ABK46721.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1686

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 10/237 (4%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++TD+   +  L    +A   A+  K+ F+ ++S+E+R+P+  I+G + L+  ++L   
Sbjct: 937  LDITDTKSIQDELAIAKDAAEAANRAKSDFLANMSHEIRTPMNAILGMSYLVLQTEL--- 993

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +SKQ  YV  +  ++  LL ++NDILD + ++A  M +  +   L+D+L+ +   ++ K+
Sbjct: 994  SSKQRDYVGKVHQAAGSLLGILNDILDFSKIEAEKMDIECAVFDLDDVLSNLANVVSYKV 1053

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNG 717
             E N+        +L  +   D  RL QI     +NA+ FS   S V+L    K   +  
Sbjct: 1054 EEKNMAFIFDLPPELPRYYHGDGLRLGQILINYCNNAVKFSHNDSNVVLSCESKVHGEQV 1113

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +  F V++ G  IPE     +F  F  V  +   +  G GLGL+I +   +L GG V
Sbjct: 1114 ELTFCVEDFGIGIPEQKQGVLFGSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEV 1170


>gi|116512237|ref|YP_809453.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107891|gb|ABJ73031.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 517

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 135/262 (51%), Gaps = 26/262 (9%)

Query: 530 IIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           I PLP+  ++ M+T  +V+              + R+  +  N+F+ +VS+EL++PLT+I
Sbjct: 277 ITPLPDLDSRFMVTMNDVS--------------SYRRTVDAHNAFIANVSHELKTPLTSI 322

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF +LL+T  +    S+   +   I   S+ L++LV D L L   +  I K   S   L
Sbjct: 323 KGFAELLETDTVSP--SETKNFASIIHKESSRLMSLVQDTLLLTKQNQRIEKKKLS---L 377

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           + L+  + QS + ++ E ++R++  +  +  +F  + Q +  IF  ++ NA+ ++     
Sbjct: 378 SALIQNILQSSSPQISEKSLRLE--TQIEEITFKTNEQMVHSIFENLIENAIKYTPAQGQ 435

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFIN 766
           + +    +    IFSV +NG  + E   + +F+RF  ++  R +  G GLGL+IVE  + 
Sbjct: 436 IFVSLHHEQDKIIFSVTDNGPGLSEIEKERIFDRFYRADESRAEVSGTGLGLAIVEKNVQ 495

Query: 767 -LHGGHVSISSSDEGVT-TINC 786
            LHG    +S   +G T T+N 
Sbjct: 496 ELHGTIDVVSILGKGTTFTVNL 517


>gi|160886472|ref|ZP_02067475.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483]
 gi|156108357|gb|EDO10102.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483]
          Length = 1362

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 121/257 (47%), Gaps = 8/257 (3%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALR--KADEI---KNSFVQHVSYELRSPLTNIIGFTDL 593
            +L FV     VRA+  +  + E +   K +EI   K  F  ++S+ELR+PL+ I+   + 
Sbjct: 804  ILAFVFYFFIVRAKMRMQVQIEHIERNKIEEISQEKVRFYINMSHELRTPLSLILAPLEE 863

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L   K  S +    Q + Y+  +   LL++VN +LD    ++G + +N  +  +  +   
Sbjct: 864  LLGEK-NSFDPAVQQKLSYVYKNGQKLLHIVNQLLDFRKAESGTLPINIVSGPVESMAMN 922

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            V         + NI     SD K   F  DR  L  I   +LSNA  F+  G  + L   
Sbjct: 923  VFNLFIENARKRNINFHFRSDLKDELFPVDRMYLETILMNLLSNAFKFTPDGGEISLSLW 982

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    + F++++NG  IPE+    +F RF        ++G G+GLS+V+  I+ H G + 
Sbjct: 983  KKESVYGFTIRDNGIGIPEEKLSRIFERFYQVDD--NQKGSGIGLSLVKLLIDKHRGRIE 1040

Query: 774  ISSSDEGVTTINCRIPS 790
            ++S     T     +P+
Sbjct: 1041 VASEIGKFTEFRVILPA 1057


>gi|148977089|ref|ZP_01813729.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145963558|gb|EDK28820.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 602

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 10/227 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+   E+ + A+  K+ F+  VS+E+R+PL  I+G   +L       ++  + + +  I 
Sbjct: 220 LSLAKESAQSANRAKDDFLSVVSHEMRTPLNGILGMAQILGEG----VDEAKKEQISIIV 275

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL ++NDILD+A ++ G ++L      L  L+ EVK +      + ++   V ++
Sbjct: 276 SSGEHLLLIINDILDIAKMEQGKLELRIEPFSLEALVQEVKNAFDNTCKQKSLDYVVTTE 335

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPE 732
              G+++A D  RL Q+   +L NA+ F+ KG+ T   +          ++ + G  IP 
Sbjct: 336 HIEGTYLAGDNTRLKQVIFNLLGNAVKFTKKGAVTCHFQWLESESRLTITITDTGIGIPT 395

Query: 733 DMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           D  +++F  F S A     R   G GLGL+IV   + L  G + + S
Sbjct: 396 DKLETIFKPF-SQADSSTTRHFGGTGLGLAIVTQLLELMSGKIELVS 441


>gi|283850871|ref|ZP_06368157.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573794|gb|EFC21768.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 830

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 147/326 (45%), Gaps = 49/326 (15%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L+ G  IR  A   S  Y++ +G      ++   D ER+  +  LE L+ + LE+     
Sbjct: 363 LTRGQDIRRYAVRISGIYDK-EGVPAGFVLMARDDTERRQAEEHLERLTRN-LEH----- 415

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                 L      D  R  R L E NE LR  DEIK++F+  VS+ELR+PLT+++GF+ L
Sbjct: 416 ------LVVERTRDLTRQARELKEANERLRGMDEIKSAFLSAVSHELRTPLTSLLGFSKL 469

Query: 594 LKTS------KLGSLNS---KQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKL 640
           +          LG+  +   K+   +E     + +    L  L+ND LDL+ +++G M+ 
Sbjct: 470 IARDFSRHFRPLGAGEAALDKRGARIEDNLRVLFSEGERLARLLNDFLDLSRIESGRMEW 529

Query: 641 NYSTIVLNDL----------LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
               I L+++          L   +  +  +M   ++ + V+         AD  RL Q+
Sbjct: 530 RDREICLDEVVRSAVAAVAGLFASRPEVDLEMRLPDVPVMVL---------ADPDRLEQV 580

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
              ++ NA  F++ G+  +  A         SV + G  I  +  + +F++F  V     
Sbjct: 581 LINLIGNAAKFTAVGAVTVRLAVSGPHTARVSVSDTGPGIAAEDRELIFDKFRQVRRDPE 640

Query: 749 G--QRRGVGLGLSIVESFINLHGGHV 772
           G    +G GLGL+I    +  +GG +
Sbjct: 641 GSAPSKGTGLGLAICREIVGHYGGRI 666


>gi|239905744|ref|YP_002952483.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795608|dbj|BAH74597.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 721

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 167/387 (43%), Gaps = 58/387 (14%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           T+D LS  +A+    G I   N A+R+     +   +PG                S+G +
Sbjct: 204 TLDGLSAHIAIVDEAGNILAVNSAWRAF--AADASCTPGA--------------VSEGAN 247

Query: 499 LFAAIITSFDDE-----------RKSLQGTLELLSDSVLEYS-------------IIPLP 534
            F A   +  DE           R+ L G L   S   LEY              +   P
Sbjct: 248 YFRACQGAIGDEADTAGRIARAIREVLAGRLPFFS---LEYPCHSPTEKRWFQVRVTRFP 304

Query: 535 N---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
               A+ ++   NVT+ V+A  AL    EA   A   K+ F+ ++S+E+R+PL  ++G  
Sbjct: 305 GDGPARAVVAHENVTERVQATAALASAKEAAEAAARAKSEFLANMSHEIRTPLNGVMGML 364

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL   KL   + +++ +++    SS  LL L+N+ILD++ ++AG   +        +LL
Sbjct: 365 QLL---KLTGCDEERNDFIKLAYDSSERLLQLLNNILDISRIEAGRTVMVQEPFSPLELL 421

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            E            N+ +   +D  L   V  D  ++ Q+   ++ NA+ F+  G   + 
Sbjct: 422 QEPVLLFQGMAKAKNVTMAFSADDGLPEQVTGDVPKIRQVLFNLVGNAVKFTQNGQVRLA 481

Query: 711 ------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
                  A+ D    + +V + G  I  ++   +F  F    ++ + Q  G GLGLSIV+
Sbjct: 482 VAYAGSPASSDKATLVVTVADTGKGISAELLPELFQPFTQGDSSFKKQYAGTGLGLSIVK 541

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             + L GG + + S +   TT++  +P
Sbjct: 542 RLVCLMGGALCLESVEGEGTTVHLSVP 568


>gi|21241454|ref|NP_641036.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106794|gb|AAM35572.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 619

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 177/406 (43%), Gaps = 32/406 (7%)

Query: 410 GGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G   W+ +  +  ++  E +Y          +  + E + +     RI L NPAF  L+ 
Sbjct: 215 GTVTWLLQRQIRRRLAAEQEYLRANGRASSVLQTVREPIVLLDASQRIVLHNPAFADLYG 274

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT------SFDDERKSLQGTLELLS 522
            EE     G  +  +       + ++      A ++        ++ E+++  G L  + 
Sbjct: 275 LEER----GNELMALEDVGGGVWRDAQIHQRLADVLLRGRELWDYEHEQRAADGVLRTM- 329

Query: 523 DSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNS 571
             ++    +PLP+       ++T  +++    A+       R +  K E + + +    +
Sbjct: 330 --LINARRMPLPDTADEDVVLMTVSDISLQKTAQLRIHELNRQMEGKVEQVSEVNRELEA 387

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F   VS++LR+PL ++ GF+D L      + + K   Y+E IS+S+  + +L++D+L  +
Sbjct: 388 FSYSVSHDLRAPLRHVAGFSDKLARHLGDTADEKSRHYMEVISSSARRMASLIDDLLVYS 447

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
            +  G ++L    + +  L+ E +  + + +   N   +V      L   VAD   + Q+
Sbjct: 448 RLGRGALRLQ--AVDMQSLVAETRAILDSNVQSENTGHRVEWHIAPLPVLVADENMMRQL 505

Query: 691 FSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           +  +L NA+ +S+K     ++ +     +G   FSV++NG+    +    +F  F     
Sbjct: 506 WMNLLGNAVKYSAKREVAKIEVSYTPMSDGGHQFSVRDNGAGFDMEYSGKLFGVFQRLHK 565

Query: 748 RGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVTTINCRIPSKE 792
             +  G G+GL+ V   +  HGG + +  + DEG T      P+ E
Sbjct: 566 ASEYAGTGIGLASVRRVLTRHGGRIWAEGAVDEGATFYFVLPPALE 611


>gi|304313326|ref|YP_003812924.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301799059|emb|CBL47302.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1224

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 117/245 (47%), Gaps = 15/245 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+ + L +K   L  ++  K+ F+  +S+ELR+PL +I+  +  L  ++  +L  KQ ++
Sbjct: 505 RSRKELQDKAYELEMSNRYKSEFLSTMSHELRTPLNSILILSQGLMENRQQNLLDKQVEH 564

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +S   LL L+NDILDL+ V+ G  +L    + L DL  E+     ++     +  
Sbjct: 565 ARVIHSSGRDLLMLINDILDLSKVEEGKFELLVDQVNLADLSKELHAMFDSQAEHKKLEF 624

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGD------ 718
            V  D +L  + V D  RL QI    +SNA+ F+  G       + +A    G+      
Sbjct: 625 IVNLDERLPETVVMDEHRLNQILRNFISNALKFTHTGRVEVNIRVPEALVKFGEQWLAPP 684

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               FSV++ G  I +D    VF  F  V      +  G GLGL+I      L GG +S+
Sbjct: 685 EAISFSVRDTGIGISKDKQALVFEAFQQVDGTISRKYGGTGLGLTISRKLAKLMGGGISV 744

Query: 775 SSSDE 779
           +S  E
Sbjct: 745 ASEGE 749


>gi|283850599|ref|ZP_06367886.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573842|gb|EFC21815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 577

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 114/238 (47%), Gaps = 21/238 (8%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-----------NSKQSQYVE---YISA 615
           + F+  VS+E+R+PLT+++GF  +++  +L  L             +  Q +E    I +
Sbjct: 341 SDFLSMVSHEIRTPLTSVLGFAVIIE-KRLEQLFLPLLDRDPRRRRQAEQVMENLGIIVS 399

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHENNIRIKVISD 674
               L +L+ND+LDLA ++AG M      +   +++  V   S+        + +    +
Sbjct: 400 EGERLKHLINDVLDLAKLEAGKMAFKQERVDPAEVVRHVMSASVGLLSSHKKVSLDTRIE 459

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
           G+L   + DR RL+Q+   ++SNA+ F+ +GS      AR  G +I   V + G  IPE 
Sbjct: 460 GRLPEVLGDRDRLIQVLVNLVSNALKFTERGSVTC--RARTEGHYIVVDVTDTGIGIPES 517

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF +F  +      + +G GLGL+I +  +  HGG +   S     +T    +P
Sbjct: 518 EQHKVFEKFNQIGATLTNKPKGTGLGLAICKHIVESHGGRIFYVSKPGSGSTFTFTLP 575


>gi|254446841|ref|ZP_05060316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256266|gb|EDY80575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 614

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 9/231 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A E K+ F+ ++S+E R+PL  I+G T L   SK  S N++Q + +E +  S+  LL +V
Sbjct: 238 ASEAKSEFLANMSHEFRTPLNGIMGMTQL-AISK--SSNTQQKELLEVVIQSADALLMIV 294

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VAD 683
           NDILDL+ +++  + +    + L+ L++           +  I        +     V+D
Sbjct: 295 NDILDLSKIESHRLTIESEPVSLHALVDSTTPFFQLVAKQKGIEFTTTVSPRCPELIVSD 354

Query: 684 RQRLLQIFSKILSNAMDFSSKGS-TVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFN 740
             RL QI   +  NA+ F+  GS TV ++  +  D    +F + + G  IP+ +  ++F 
Sbjct: 355 AVRLRQILFNLTGNAIKFTKSGSVTVSIEPIQLPDGKYLLFEIADTGIGIPDKLLNTIFE 414

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F        R   G GLGL+I     +L GG V + S  E  +  +  IP
Sbjct: 415 AFTQADTSSTRNFGGTGLGLTITRQLTHLLGGEVHVESVVEKGSVFSVFIP 465


>gi|169634358|ref|YP_001708094.1| GacS-like sensor kinase protein [Acinetobacter baumannii SDF]
 gi|169153150|emb|CAP02235.1| GacS-like sensor kinase protein [Acinetobacter baumannii]
          Length = 935

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  SS  LL L+
Sbjct: 286 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRKSSAHLLALI 343

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 344 NDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGD 403

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 404 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 462

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 509


>gi|123443916|ref|YP_001007887.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090877|emb|CAL13759.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 778

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 121/233 (51%), Gaps = 14/233 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +S+Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DSEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           K I + +L      + D  RL QI   ++ NA+ F+ +G  V+      N   IF V+++
Sbjct: 379 KFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQGEIVVRVRRESNDRLIFEVEDS 438

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           G  IPED    +F  +  V +++ G+   G G+GL++ +      GG +++ S
Sbjct: 439 GMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKS 491


>gi|169797173|ref|YP_001714966.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
 gi|215484636|ref|YP_002326871.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
 gi|239500717|ref|ZP_04660027.1| Sensor protein gacS [Acinetobacter baumannii AB900]
 gi|260556077|ref|ZP_05828296.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606]
 gi|301345776|ref|ZP_07226517.1| Sensor protein gacS [Acinetobacter baumannii AB056]
 gi|301511166|ref|ZP_07236403.1| Sensor protein gacS [Acinetobacter baumannii AB058]
 gi|301594979|ref|ZP_07239987.1| Sensor protein gacS [Acinetobacter baumannii AB059]
 gi|332856912|ref|ZP_08436321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013150]
 gi|332867184|ref|ZP_08437449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013113]
 gi|332874024|ref|ZP_08441959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
 gi|20271376|gb|AAM18622.1|AF497904_1 GacS-like sensor kinase protein [Acinetobacter baumannii]
 gi|169150100|emb|CAM87994.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
 gi|213986830|gb|ACJ57129.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
 gi|260410132|gb|EEX03431.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606]
 gi|322506795|gb|ADX02249.1| barA [Acinetobacter baumannii 1656-2]
 gi|323516664|gb|ADX91045.1| GacS-like sensor kinase protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332726966|gb|EGJ58471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013150]
 gi|332734123|gb|EGJ65255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013113]
 gi|332737765|gb|EGJ68657.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
          Length = 935

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  SS  LL L+
Sbjct: 286 SNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRKSSAHLLALI 343

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD + +DAG ++L  +   L + + +V   ++    + +I +    +D      + D
Sbjct: 344 NDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGD 403

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  +     K +
Sbjct: 404 ALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKL 462

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  F        R+  G GLGL+I +  ++L  G +    + E   T
Sbjct: 463 FESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPT 509


>gi|148263562|ref|YP_001230268.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397062|gb|ABQ25695.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
          Length = 679

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 132/256 (51%), Gaps = 6/256 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LTF++VT+  RA+  L E NE L+  + +K+ F+   + +LR P+  I      L+ S
Sbjct: 422 AILTFMDVTEERRAQHQLAEANERLKGVNHLKSEFIYTATNDLRLPVAVIHSNCSQLRDS 481

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L   Q ++++    S   L++L+ ++LD +  D+  ++L+     + + + EV   
Sbjct: 482 DTNNLTEMQREHLDSAIDSCDRLMDLIEELLDNSNFDSSELELSCEDKNIMESIQEVYTV 541

Query: 658 IATKMHENNIRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +A    ++ +++ V  + D     F  D +++  + + ++ NA+ F+  G  + +  +  
Sbjct: 542 LAPFAWQHGLQMSVEPLQDNISAFF--DSKKIQCVLTNLIGNAIKFTPSGGKIGISVSVC 599

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           + + + SV + G  IPE+    +FN F  + + +   ++G GLGL+I +  ++ H G + 
Sbjct: 600 DEELLVSVTDTGEGIPENYITRIFNEFYHLKSTNSSAKKGSGLGLAICKRIVDAHSGRMW 659

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    +T +  +P
Sbjct: 660 VDSTLNHGSTFSFALP 675


>gi|150390093|ref|YP_001320142.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
 gi|149949955|gb|ABR48483.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
          Length = 451

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 10/233 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL- 620
           L + D+ +  FV +VS+EL++PLT++     LL  S L       + Y E++S   T + 
Sbjct: 217 LSQIDKQRRDFVANVSHELKTPLTSM----KLLSESLLMQEGGDIAIYREFLSDIDTEID 272

Query: 621 -LN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LN ++  +L L  ++   + + Y    +N L+ +V QSI     +  I+I +    K+ 
Sbjct: 273 RLNKIIESLLMLVDLNEDKLTIEYEITYVNYLVEKVTQSIKPLAEQKKIKIIINQWHKIQ 332

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            ++ D+ ++ Q  + I+ NA+ ++  G  V++   R+    I  + +NG  I E+    +
Sbjct: 333 IYL-DQGKIHQALTNIIYNAVKYTEDGGKVVITLYREGNRAIIKIADNGIGISEEELPYI 391

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF  V +A   +  G GLGLSI E  I+LH G + + S +   TT+  ++P
Sbjct: 392 FERFYRVDSARSRKTGGSGLGLSISEQIIHLHQGTIEVESKEHKGTTVYVKLP 444


>gi|326794044|ref|YP_004311864.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326544808|gb|ADZ90028.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 912

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 12/225 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K EA  KA   K  F+  +S+E+R+P+  IIG   L++ + L  +   QS YV  +  S+
Sbjct: 224 KAEAATKA---KTEFLATMSHEIRTPMNGIIGLGHLIQNTVLDQI---QSDYVRKMLRSA 277

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+++NDILD + +++G +++      L+ LL +V     ++  E  +   +  D +L
Sbjct: 278 DSLLSIINDILDFSKIESGSIEIEQRDFHLDSLLEQVFVLNESRAIEKGLTFTIDRDFRL 337

Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI-FSVKNNGSSIPED 733
             +   D  RL QI   ++SNA+ F+  G  S  + +  R    +I FSVK+ G  I  D
Sbjct: 338 QDALEGDSFRLNQILVNLVSNAIKFTEHGAVSLSVAQIERFKDPWIRFSVKDTGVGIQPD 397

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             +S+F  F        R+  G GLGL+I +   +L GG + + S
Sbjct: 398 KIESLFEAFKQEDSSTTRKYGGTGLGLAITKQLSDLLGGEIFVKS 442


>gi|242217331|ref|XP_002474466.1| hypothetical histidine kinase [Postia placenta Mad-698-R]
 gi|220726381|gb|EED80332.1| hypothetical histidine kinase [Postia placenta Mad-698-R]
          Length = 1160

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 121/246 (49%), Gaps = 14/246 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R + EK EA  +A+E+K  F+   S+E+R+P+  + G+ +LL  +   +L+ +Q+ Y
Sbjct: 607 RLWRIMAEK-EAAERANEVKQQFISVASHEIRTPMHTVNGYCELLART---TLSEEQTVY 662

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN---- 665
           +  I  +   +  +  ++LD + +D   ++L+   +++   L +V + +A ++  N    
Sbjct: 663 IASIQQACHAINVIAGNVLDFSKLDRNNVELSARPVLMQ--LRKVLEDLA-RIQSNIPGV 719

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +I I V SD     ++ D     ++   +LSNA  F  KG   +  +    G  +F V++
Sbjct: 720 DIIISVASDVPTTVYL-DETYTFRVLMNLLSNAQKFCDKGYICVTVSMNGPGQLVFQVRD 778

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP     ++F  F     +    R G GLGLSI++  +    G V   S++   +T
Sbjct: 779 TGCGIPASFRSALFEPFRQADTSLTRSREGTGLGLSIIKHLVQRMNGSVEAESTEGLGST 838

Query: 784 INCRIP 789
              ++P
Sbjct: 839 FTVKLP 844


>gi|183219846|ref|YP_001837842.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189909977|ref|YP_001961532.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774653|gb|ABZ92954.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778268|gb|ABZ96566.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 710

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 130/264 (49%), Gaps = 12/264 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           ++L F ++++   A+  L +  E    A++ K+SF+  +S+E+R+PL+ +IG  +LL  +
Sbjct: 294 SILVFRDISEEFAAKTYLEKAKENAEMANKAKDSFLATMSHEIRTPLSGLIGMLELLYQT 353

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SLN  Q   V     S   LL +++DILDL+ ++ G ++L+     ++ LL+EV  +
Sbjct: 354 ---SLNDDQKSLVNNALVSGNSLLRILSDILDLSKIEEGKLELSLQPTSISRLLSEVATT 410

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                    + +    D K+ S  + D  RL QI +  +SN + F+SKGS  I      N
Sbjct: 411 YLQIASSKGLTLSYAVDEKITSAHILDSLRLSQIINNFVSNGIKFTSKGSIHISANLIKN 470

Query: 717 GDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
            D +    FSV + G  + +     +F  +        R   G GLGL+I      L  G
Sbjct: 471 IDTLQQIQFSVTDTGIGLSKTDQSKLFQSYTQATADTARLYGGTGLGLAICMRLSELMDG 530

Query: 771 HVSISS-SDEGVT-TINCRIPSKE 792
           +++I S    G T +I   +P+ E
Sbjct: 531 NITIDSLPGSGSTFSITLSLPTTE 554


>gi|157364230|ref|YP_001470997.1| histidine kinase [Thermotoga lettingae TMO]
 gi|157314834|gb|ABV33933.1| histidine kinase [Thermotoga lettingae TMO]
          Length = 488

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 14/263 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q ++T  +VT+        T++ E LR AD +K  F+  VS+ELR+PLT I  +T+ +
Sbjct: 235 QPQVLITITDVTN--------TKELEKLRAADRLKTDFIATVSHELRTPLTAIKAYTETI 286

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                       + +++ +   S  L +L++++LD A ++   M L  S   L +L+ +V
Sbjct: 287 LADPESMDKDTLTGFLQIVYKESLHLESLLDELLDFAKLEQKAMVLEKSKFDLTELIMQV 346

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILK 711
            QS++       ++++ +    +   VAD++R+ Q+   ++SN + +S + ++   V L 
Sbjct: 347 IQSMSEFARSKKVKLQCVKSKPI-YIVADQKRIRQVLINLISNGIKYSKEEASEKYVKLS 405

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
           A       I SV +NG  I +     +F +F    +    +  G GLGL+I +  + LHG
Sbjct: 406 AETHQDSVIISVADNGIGIEKQHQNKIFEKFFRADSVFDYRTEGTGLGLAISKEIVELHG 465

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G +   S     T    +IP  E
Sbjct: 466 GQIWFESKPHEGTVFYVKIPQGE 488


>gi|32474805|ref|NP_867799.1| histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
 gi|32445345|emb|CAD75346.1| putative histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
          Length = 445

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 167/361 (46%), Gaps = 42/361 (11%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           ET+ N    +Q      LS+GV V   D  + L NP+   L          G   R+  A
Sbjct: 95  ETRQNASALLQ------LSDGVIVLAKDFSVLLINPSAVRLL---------GLKKRD--A 137

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              R + E        A I S   E++  + T+E+    V+     PL   +  +  ++ 
Sbjct: 138 LLGRCFTELVRVPQLLASIRSAVREQQPQEFTVEVHDQGVMR----PL---RVRVDLIDT 190

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +    + +L ++ EA R+ +E++  F+ +VS+EL++PL  I G+ +   T +L   +  
Sbjct: 191 GEEPNLQLSLRDETEA-RRVEEMRREFIANVSHELKTPLAAIKGYAE---TVELAVQDDP 246

Query: 606 QS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   +++ I +    L  LV++++ LA   AG   L+ S++ L++++++  ++      
Sbjct: 247 DAALHFMQQIMSQCLRLERLVHEMMQLARAQAGPANLHLSSVSLSEIVSDAIRTYEPVAA 306

Query: 664 ENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            N +  I+ +  G+    +ADR+  L I + ++ NA+ ++  G  + +        +   
Sbjct: 307 ANGLDLIQEVPSGE-AKIIADREATLTIANNLIGNALRYTPSGGEIRVSIVEQTDQWALV 365

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR------GVGLGLSIVESFINLHGGHVSISS 776
           V++ G  IP    + +F RF    +RG R       G GLGL+IV+       G VS++S
Sbjct: 366 VEDTGVGIPYSEQQRIFERF----YRGSRNEESSTSGTGLGLAIVKHLTQAQQGDVSVTS 421

Query: 777 S 777
           +
Sbjct: 422 T 422


>gi|121603351|ref|YP_980680.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120592320|gb|ABM35759.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1130

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 12/211 (5%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  ++G T LL  + L   + +Q  YV  +  SS  LL ++NDILD + +++
Sbjct: 480 MSHEIRTPLNGVVGMTTLLADTPL---DLEQRDYVHTMRISSDQLLGVINDILDFSKIES 536

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKI 694
           G ++L    + L   + E     A +  E  + + V + D   G    D  RL QI   +
Sbjct: 537 GKLELENEPLNLLATIEEACDIGAPRAREKGLELLVDLGDELPGWVRGDVTRLRQILLNL 596

Query: 695 LSNAMDFSSKGSTVILKAARDN-----GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           ++NA+ F+ KG  V+     ++     G  + F +K++G  I  D   ++F  FV     
Sbjct: 597 VNNAVKFTEKGQVVVSAHVLEDFSPGRGGLVEFRIKDSGIGIEPDRQAALFQSFVQVDAS 656

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             R+  G GLGL+I +  + L GG + + S+
Sbjct: 657 TTRKYGGTGLGLAICQRLVRLMGGQIGLESA 687


>gi|119657095|gb|ABL86672.1| ERS1 [Gossypium barbadense]
          Length = 441

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 38/266 (14%)

Query: 547 DSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L ++N AL        KA   +N F+  +++E+R+P+  II    LL  ++L
Sbjct: 119 ESMRARDQLLDQNVALNLARQEAEKAIHARNDFLSVMNHEMRTPMHAIIALCSLLLETEL 178

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   +E +  SS +L  L+ND+LDL+ ++ G ++L++    L+ +  E    I 
Sbjct: 179 ---TPEQRVMIETVLKSSNLLATLINDVLDLSRLEDGSLELDFGMFDLHGIFKEAINLIK 235

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
                  + + +I    L  + V D +RL+Q    I+ NA+ F+ +G   I+ +      
Sbjct: 236 PIASIKKLSMTMILAPDLPMYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPES 295

Query: 714 -RD-----------NGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVG 755
            RD            G F     VK++G  + P+D+   +F +F +    G  +   G G
Sbjct: 296 LRDWRRPEFYPVSSQGHFYLRVQVKDSGCGVLPQDI-PILFTKF-AQPRSGSSQNSGGAG 353

Query: 756 LGLSIVESFINLHGGHVSISSSDEGV 781
           LGL+I + F+NL GGH+ + S  EGV
Sbjct: 354 LGLAICKRFVNLMGGHIWLES--EGV 377


>gi|153834760|ref|ZP_01987427.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01]
 gi|148868795|gb|EDL67863.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01]
          Length = 576

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 136/271 (50%), Gaps = 18/271 (6%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I +   + +   V V  S      L +  E   +A++ K+ F+  +S+E+R+PL
Sbjct: 176 LIERAVIDIETKEKLQRIVEVRTS-----QLAKAREEAERANQSKSEFLAMMSHEIRTPL 230

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+L+ S   +L+  QS+ +  +  S+ +LL +++DILDL+ +++G  +L+   
Sbjct: 231 NSVLGMLDILRQS---TLSESQSEVLNQMECSADLLLAIISDILDLSKIESGSFRLSEQW 287

Query: 645 IVLND----LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
             L D    ++++ KQ   +K      +  + ++ +   +  D  RL Q+   ++ NA  
Sbjct: 288 TNLRDAVTLVISQQKQVATSKNLSFEYQCNLDNNKQ---YWIDSTRLSQVLFNLIGNASK 344

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F+  G   +    RD G+ + SV + G  IP+     +F  F        RR  G GLGL
Sbjct: 345 FTDFGGINVSVIERD-GELVISVVDTGIGIPQSKIGHLFTAFHQGDSSITRRFGGTGLGL 403

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I +  + +  G +S+ S +   +    +IP
Sbjct: 404 AITKHLVEMMRGTISVKSEENVGSHFEIKIP 434


>gi|319903051|ref|YP_004162779.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319418082|gb|ADV45193.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 652

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 115/206 (55%), Gaps = 5/206 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+  N    KA++IKN+F++++S+E+R+PL  I GF+ ++ +    ++  +Q  + E I 
Sbjct: 424 LSAMNHRAEKAEQIKNTFIRNISHEIRTPLNAISGFSQVIASDPELNMEERQG-FSELII 482

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++ +L  LVNDIL+L  +    ++++ + +   +++ E+ + + T + +  +R+K+   
Sbjct: 483 KNTDLLTKLVNDILELGNMGTSKIQIHKAEVSAQEIIKELSRQMITHVPQ-GVRLKLSFP 541

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +    + D+ RL QI   ++SNA   +++GS + L   +     +F+V + G  IP + 
Sbjct: 542 QQEIKVLTDKLRLKQILQNLISNACKNTNEGS-ISLSVQKTASCVMFTVTDTGCGIPSEK 600

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSI 760
             S+F  F        ++G G+GLSI
Sbjct: 601 ADSIFGEF--EKLDNYKQGAGIGLSI 624


>gi|304407987|ref|ZP_07389637.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343006|gb|EFM08850.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 608

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 144/283 (50%), Gaps = 37/283 (13%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           + +LE +I+P+   Q    FV V         + +   A+R+ + +++ FV +VS+EL++
Sbjct: 330 ERLLELNIVPM--LQDKDDFVGVL-------LVLQDVSAIRRLERMRSEFVANVSHELKT 380

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           P+  + GF + L     G++N +++   +++ I   S  L  L+ DIL+L+ +++  + L
Sbjct: 381 PVAAVKGFAETLLG---GAVNDEETARSFLQIIYDESERLNRLIGDILELSKIESRRVPL 437

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
             S + ++    +  Q +  + +   I +++ +D ++  +V AD  RL QI   +LSN +
Sbjct: 438 MLSPVEMDSFAAKTVQLMEAEANRKRITLELKADDEI--YVEADEDRLRQIMMNLLSNGI 495

Query: 700 DF----------------SSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
           ++                +S G +++    RD+ D I  ++K+ G  IP+     +F RF
Sbjct: 496 NYTPEGGKVTVTVEPVWPASTGRSLLTDEERDDYDRIRITIKDTGIGIPKKDLPRIFERF 555

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             V  A      G GLGLSIV+  + +H G +++  S+ GV T
Sbjct: 556 YRVDKARSRSSGGTGLGLSIVKHLVEMHNGSIAV-ESEVGVGT 597


>gi|220909140|ref|YP_002484451.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865751|gb|ACL46090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1391

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 20/243 (8%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+ +K+ F+  +S+ELR+PL  I+G+  LL+T       + ++  +  I  ++ + + L+
Sbjct: 993  ANRMKDEFLAVLSHELRTPLNPILGWCKLLQTRPFEPARAMEA--LRTIERNAQLQVQLI 1050

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
             D+LD + +  G + L  + + L+ ++    +S+        I+++   D        D 
Sbjct: 1051 EDLLDFSKIVQGKLPLQIAPVQLSSIITAALESVRLAAEAKTIQLQTCLDQHPILVWGDA 1110

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------FIFSVKNNGSS 729
             RL Q+   +LSNA+ F+ +G  V ++     G                    V + G  
Sbjct: 1111 NRLQQVVWNLLSNAIKFTPEGGQVEVRLESGEGSPGKRAHPMPVNTSSYAQICVIDTGKG 1170

Query: 730  IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINC 786
            I  D    VF+ F        RR  G+GLGL+IV+  + +HGG +   S   G   T   
Sbjct: 1171 IASDFLPHVFDYFRQEDGAMTRRYGGLGLGLAIVKQIVEMHGGRIWAESPGLGEGATFTV 1230

Query: 787  RIP 789
            R+P
Sbjct: 1231 RLP 1233


>gi|75907783|ref|YP_322079.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75701508|gb|ABA21184.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 443

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L +A  +K+ F+  +S+ELR+P+  IIGF+ +L   K G+L  +Q+  VE I  +  
Sbjct: 164 NLKLLEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGNLTGQQADMVERILNNGK 223

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+N++LD + ++ G ++L      L  ++N     + +      + + V  D +  
Sbjct: 224 HLLMLLNEVLDFSKLEEGRLELKPELFDLTKVINAAVAEMRSLAEAKKLSLLVQIDLQNP 283

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI-FSVKNNGSSIPEDMCK 736
             V D  R+ QI   +LSNA+ F+  GS  I    +D  G ++   VK+ G  I     K
Sbjct: 284 LLVNDPVRIKQILINLLSNAIKFTDSGSIWI--DVKDLPGSWVEIRVKDTGIGIASKDFK 341

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            +F  F  V  +   +  G GLGL+I++S + +  G + I  S  GV +I
Sbjct: 342 YIFEAFRQVDQSITRKYAGTGLGLAIIDSLVQMMSGKI-ILESQLGVGSI 390


>gi|327484386|gb|AEA78793.1| Sensor histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 734

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 19/244 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 333 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 385

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +K   ++
Sbjct: 386 --TSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSS 443

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714
              E  ++ ++   I+DG+   +  D+ RL QI   +LSNA+ F+  G   I    ++  
Sbjct: 444 LCVEKGLKFQLNSEITDGRW--YYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCD 501

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 502 EENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTV 561

Query: 773 SISS 776
            + S
Sbjct: 562 LVQS 565


>gi|307264990|ref|ZP_07546551.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919975|gb|EFN50188.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 124/239 (51%), Gaps = 15/239 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L + +E+KN F+ ++S+EL++PLT+I GF   +    L   NS+  +Y+  I   +  
Sbjct: 231 EELGQLEEMKNEFISNISHELKTPLTSIKGFA--ITAMDLVEKNSELYEYLNIIDEETDR 288

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVISDGKLG 678
           L  LV+++LD + ++   +KL++  + L+ L   ++ ++A  + H +N  + +I   K+ 
Sbjct: 289 LSRLVDELLDFSKIELNKIKLSFEEVELDKL---IEDTVAILRPHASNDGVNLICKKKID 345

Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             V   D  RL Q+   I+ N +   S+G  V +     +   +  +++ G  IP++  K
Sbjct: 346 RVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAVIRIEDQGQGIPQEEIK 405

Query: 737 SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F++F    +RG+     G GLGL+I +  I  H G +++ S     +     +P K+
Sbjct: 406 YIFDKF----YRGKNNKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELPLKD 460


>gi|300718620|ref|YP_003743423.1| Aerobic respiration control sensor protein [Erwinia billingiae
           Eb661]
 gi|299064456|emb|CAX61576.1| Aerobic respiration control sensor protein [Erwinia billingiae
           Eb661]
          Length = 776

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 119/234 (50%), Gaps = 14/234 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  +    LN +Q +Y
Sbjct: 264 RDITERKRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLDT---DLNQEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ ND++++  ++   ++L+   +     L +++    + +      +
Sbjct: 321 LKTIHVSAITLGNIFNDVIEMDKIERRKVQLDIQPVDFTGFLADLEN--LSGLLAQPKEL 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           K + D +L      + D  RL QI   ++ NA+ F+ KGS ++  A        F V+++
Sbjct: 379 KFVLDPQLPLPHKIMTDGTRLRQILWNLIGNAVKFTQKGSIIVRVAYLGEDCLRFEVEDS 438

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
           G  IP+D    +F  +  V + H G+   G G+GL++        GG +++ S+
Sbjct: 439 GMGIPQDEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQSMGGDITVHSA 492


>gi|292492086|ref|YP_003527525.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580681|gb|ADE15138.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 914

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 7/230 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    EAL++ D  KN F+  + +ELR+PL  I    +L++        + QS+ ++ I 
Sbjct: 532 LVHIQEALKETDRCKNEFLAMLGHELRNPLAPICNAVELMRMHLHHP--AIQSKSIDIID 589

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  LVND+L++A +  G + L    + L +++ +  ++    +      + +   
Sbjct: 590 RQAKHLTRLVNDLLNVARIVTGKINLKTQPVELKEVVMQAVETAQPAIESARHELTLSLP 649

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPED 733
            +     AD  RL+QI + +L+NA++++  G  + L+ A+   G+ I  V++NG  I  +
Sbjct: 650 AQPLKVEADPVRLVQIVANLLNNAVNYTPSGGHIQLQVAQSQEGEAIIRVRDNGVGILPE 709

Query: 734 MCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
               +F+ F + A R     + G+GLGL++V     +HGG     S   G
Sbjct: 710 KLPYIFDIF-TQADRSLDQAQSGLGLGLTLVHRLTEMHGGKAFALSEGPG 758


>gi|260771832|ref|ZP_05880750.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
 gi|260613124|gb|EEX38325.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
          Length = 1139

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 35/332 (10%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           P  +  W  E  R+S G   + I  T  R        D    +  SF+  ++S++  ++L
Sbjct: 392 PLLKLTWAAE--RVSAGDLDQPIIHTQRR--------DEIGRLAVSFERMQRSIREKIQL 441

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +    +E                 + D+++  R   ++N+ L+ A+++K+ F+   S+EL
Sbjct: 442 IKSQNIE-----------------LEDNIQLIR---KQNDELQLANKLKDEFLATTSHEL 481

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  +IG  + L +   G +++     ++ I +S   L NLV+D+LD   +  G + +
Sbjct: 482 RTPLHGMIGIAEALTSGANGPISAAHRYQLDIIISSGQRLANLVDDLLDYHKMRYGHLDI 541

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
               + L++    V +     + +  +R I  I+D  L    AD QRL Q+   ++ NA+
Sbjct: 542 ETQAVNLSNATRMVLELSHHLLGKKTLRIINQIADQPLW-VSADAQRLEQVLYNLIGNAI 600

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLG 757
            ++S+G  VI     ++   I  V + G  IP +  + +F   +   +     R+G GLG
Sbjct: 601 KYTSEGKIVISATPMEHQVRI-QVVDTGQGIPAEQLEHIFEPLIQAGYDSSRYRQGAGLG 659

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I    I L  G + +SS     TT +  +P
Sbjct: 660 LTISRQLIELMQGSLYVSSQPMVGTTFSFTLP 691


>gi|320008930|gb|ADW03780.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces flavogriseus ATCC 33331]
          Length = 510

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 13/243 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A  +L +K   +   +E    FV  +S+ELR+PLT I    ++L+  +  SL+   +  
Sbjct: 254 KAASSLEKKVADMSAREESSRRFVADMSHELRTPLTAITAVAEVLE-DEADSLDPMIAPA 312

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  + + +  L +LV +++++   DAG  +L   T+   D+ ++V   I  +   + + +
Sbjct: 313 VHLVVSETRRLNDLVENLMEVTRFDAGTARLVLDTV---DVADQVTACIDARAWLDAVDL 369

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               D + G  V  D +RL  I + ++ NA+     GS V +    D  + +  V+++G 
Sbjct: 370 ----DAERGIMVRLDPRRLDVILANLIGNALKHG--GSPVRVSVRTDEDELVIEVRDHGP 423

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC- 786
            IPED+   VF+RF  ++A R +  G GLGLSI     ++HGG ++ S+  +G   +   
Sbjct: 424 GIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAVENAHIHGGDITASNLPDGQGAVFVL 483

Query: 787 RIP 789
           R+P
Sbjct: 484 RLP 486


>gi|229193133|ref|ZP_04320088.1| hypothetical protein bcere0002_47830 [Bacillus cereus ATCC 10876]
 gi|228590397|gb|EEK48261.1| hypothetical protein bcere0002_47830 [Bacillus cereus ATCC 10876]
          Length = 365

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 127/245 (51%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 121 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 180

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + +++++ 
Sbjct: 181 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLQA 238

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DN + +  V N G S
Sbjct: 239 RLNIDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNEEVVVQVINYGDS 297

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 298 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTMFEVR 356

Query: 788 IPSKE 792
           +P  E
Sbjct: 357 LPKDE 361


>gi|254976087|ref|ZP_05272559.1| putative sensor histidine kinase [Clostridium difficile QCD-66c26]
 gi|255315220|ref|ZP_05356803.1| putative sensor histidine kinase [Clostridium difficile QCD-76w55]
 gi|255517889|ref|ZP_05385565.1| putative sensor histidine kinase [Clostridium difficile QCD-97b34]
 gi|255651005|ref|ZP_05397907.1| putative sensor histidine kinase [Clostridium difficile QCD-37x79]
          Length = 912

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 166/368 (45%), Gaps = 25/368 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY---NESDG 496
           ID L +G+ +   D  I  +N +F  +           T+I +I  +  +     N  + 
Sbjct: 525 IDILPDGICLLKEDLSINYANKSFLDML--------AFTNIDDIKDSNIKLLMNANTEEK 576

Query: 497 WDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNA--QTMLTFVNVTDSVRAE 552
                 +    ++ R  L    EL++  D ++E  +  LP A   T    + + D V  +
Sbjct: 577 MKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALPFAIYNTRYIMLIIKDLVHKK 636

Query: 553 RALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKLGSLNSK 605
            +   + E L   K D+IK  F  ++S+EL++PL N+I  ++ L     +  K+   N+ 
Sbjct: 637 YSEQAEKELLERFKTDKIKTEFFANMSHELKTPL-NVISSSNQLVDSFYRNEKIKDYNNN 695

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              +V+ +  SS  L  L+N+I+DL  +++G   L  +   +  ++ ++  +I       
Sbjct: 696 IKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALRK 755

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +I+I   +D +  +   D+  + +I   +LSN + F+  G  + +         I SVK+
Sbjct: 756 DIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDKVIISVKD 815

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D  + +F  F  V         G G+GL+IV++ ++LHGG + + S     T 
Sbjct: 816 TGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKGTE 875

Query: 784 INCRIPSK 791
               +P K
Sbjct: 876 FLISLPMK 883


>gi|225388358|ref|ZP_03758082.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme
           DSM 15981]
 gi|225045581|gb|EEG55827.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme
           DSM 15981]
          Length = 972

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 14/245 (5%)

Query: 544 NVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +VTD VR E+     L     A  +A+  K+ F+  +S+E+R+P+  IIG +  +    +
Sbjct: 653 DVTDVVRQEQRQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMS-TIAAQHI 711

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G  + + +  +  I  SS  LL+L+NDILD++ +++G M L    I   + LN +     
Sbjct: 712 GD-DEQVADCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIPTEEFLNGINSICY 770

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
            +     +  + I+D  L   +V D  +L Q+   ILSNA+ F+S+G  V   A+     
Sbjct: 771 AQAASKGVDYECIADPVLDDYYVGDAMKLQQVLINILSNAIKFTSEGGKVTFSASQRKKT 830

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGH 771
           +++    F V + G  + E+    +F  F   S        G GLGL+I ++ +++  G 
Sbjct: 831 KNDAVLRFIVNDTGVGMSEEFIPHIFEPFSQESTGTTAVYGGTGLGLAISKNIVDMMDGR 890

Query: 772 VSISS 776
           +++ S
Sbjct: 891 ITVRS 895


>gi|224537088|ref|ZP_03677627.1| hypothetical protein BACCELL_01965 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521315|gb|EEF90420.1| hypothetical protein BACCELL_01965 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 479

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 117/216 (54%), Gaps = 2/216 (0%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++G+LN +Q Q  + I  ++  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKSIKENADRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            +  ++L++  V+AG +++        +L+    ++   +  +  I+I+V   + K+   
Sbjct: 311 GITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVEYPEEKMPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +++  + + +LSNA+ +S +   V++ A R+       V++ G  I     +S+F+
Sbjct: 371 FVDSEKIAWVLTNLLSNAVRYSKENGRVVIGAKREKEFVELYVQDFGKGIDPRYHQSIFD 430

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 431 RYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVES 465


>gi|261419916|ref|YP_003253598.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319766730|ref|YP_004132231.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261376373|gb|ACX79116.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317111596|gb|ADU94088.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 457

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  +S+ELR+PLT + G+ D+ +   L     +++ Y+  I   +  +  +V D+ 
Sbjct: 236 RSEFLASISHELRTPLTYVKGYADIARRPHLS--EEQRANYMAIIYEEAEKIEKMVKDLF 293

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +LA ++    ++      L   L ++ + +     E ++ +     G + + + DRQR  
Sbjct: 294 ELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLSLVCQCPGSVMAAI-DRQRFE 352

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   +L NA  ++  G+TV +         + +V + G+ IP +    +F RF  V  +
Sbjct: 353 QVMINVLDNARKYAFSGTTVAVAVHLQKQGIVIAVSDEGTGIPPEDVPRIFERFYRVDKS 412

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 G GLGL+I +  +  HGG ++  S     TTI   +P
Sbjct: 413 RSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTILITLP 455


>gi|322417553|ref|YP_004196776.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320123940|gb|ADW11500.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 762

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 122/511 (23%), Positives = 217/511 (42%), Gaps = 49/511 (9%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAI--FDQNRYLQFHN---RSFVE-LWEIDLAFLATNPS 351
           E  ++  L    E + +++VA+A   F   +     N    +FV  L    LAFLA+   
Sbjct: 267 ETVIDPILNSRGEFVGSISVAVATERFKHTKRENLQNILASAFVGILCSFGLAFLASRHL 326

Query: 352 NDELLEFLRSANKLPE-QLNWKTW--KENIFSVYKSS-----ETHKDTWHLPNGQTLHVI 403
              L +   SA K+ E  LN +    +++   +  SS     +  K+   + N +T    
Sbjct: 327 TGPLRQLAASARKIEEGDLNQRVEGSQDDEVGMLASSFNNMVQALKERDSIINKKT---- 382

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPA 462
                 G    + E L   VD  T    +   + E +   L+EGV V   + R+ L NPA
Sbjct: 383 ------GDLQELNEQLEGMVDERTSALAMEMGRLEAVLTSLAEGVVVTDLNNRVVLFNPA 436

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            + L++   +R+  G  I  +         E  G+      I       +      EL +
Sbjct: 437 AQQLFEMVPHRVI-GQPIEQVC--------ELVGFTPLLERIRELGQPERGGGSKEELTA 487

Query: 523 DSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               L   + PL + +    F  +  S+R            ++ D +K  F+  VS+EL+
Sbjct: 488 KGKRLHVYLSPLSDEEG--NFAGIVLSIR-------DVTVEQQVDRMKTEFISTVSHELK 538

Query: 582 SPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PLT+I G   LL T SK   L   + Q +     ++  L+ L+++ILD++ +++G M  
Sbjct: 539 TPLTSIKGSLQLLLTRSKW--LTDTERQLLTVCFRNTQRLIRLISEILDISGIESGGMVF 596

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            +  + + +L     + +       +I I       L     D  RL+Q+ + +LSNA+ 
Sbjct: 597 KFKPVSIGELTVYAVEEMKPYAMGRDITIVNTVGEHLPMVYGDSDRLIQVITNLLSNAVK 656

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           FS +G  V++ A ++    + SV + G  I       +F +F  +    RG+  G GLGL
Sbjct: 657 FSPEGKVVMVSAEQEGNYVVVSVGDKGRVIQWSDRDKLFKKFQQIECQERGKVGGTGLGL 716

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I +  +  H G +  +++ E   T +  +P
Sbjct: 717 AICKEIVERHHGRIFYTAAQERGNTFSFTVP 747


>gi|317497235|ref|ZP_07955559.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895480|gb|EFV17638.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 346

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 114/216 (52%), Gaps = 5/216 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK   L K ++++   ++ +S++LR+PL +I G  D+L  S     +  + Q    I   
Sbjct: 107 EKISVLAKNEQLRADLLRAISHDLRTPLCSISGNADMLLNSGERLDDITKHQIYTDIYDD 166

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L+N+V ++L +  ++ G +KL ++  +L++++ E  + I+ K  E  I   V    +
Sbjct: 167 SEWLINIVENLLSITRLNDGRLKLKFTDQLLDEVIAESLRHISRKHEEYQI---VTECDE 223

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L     D + +LQ+   ++ NA+ ++ KGST+ + A  +NG     V++NG  I ++M  
Sbjct: 224 LILAHMDVRLILQVLINLVDNAIKYTPKGSTIRICAMNENGKAKIQVEDNGPGICDEMKP 283

Query: 737 SVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGG 770
            +F  F +  N      R +GLGL++  S I +H G
Sbjct: 284 HIFEMFYTGKNTIADSHRSLGLGLALCRSIIEVHNG 319


>gi|310824646|ref|YP_003957004.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397718|gb|ADO75177.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 473

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  V+++LR+PL  +   T+LL  +       K  + +  ISA    L  +V D+LD  
Sbjct: 251 FLAGVAHDLRTPLNTLKLSTELLLRAPTPPPPEKLRESLLRISAQLDRLNRMVGDLLDQT 310

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG ++L      L  L+ EV +       ++ I + V  DG +     D  RL+Q+ 
Sbjct: 311 RIEAGNLELRLEDTDLCTLVREVAELHRPLSQQHQIELTV-PDGPV-PVRGDPTRLIQVL 368

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQ 750
           + +LSNA+ +S  G  V +   +   + + SV + G  IP    + +F  F  +A    +
Sbjct: 369 TNLLSNAIKYSPLGGRVRVLIEQSQEEVLLSVSDEGVGIPPGEYERIFAPFKRSASASAE 428

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G+GLGLS+    +  HGG++ + S +   +T   R+PS+
Sbjct: 429 LPGIGLGLSVSRRIVRAHGGNIEVVSQEGAGSTFRVRLPSQ 469


>gi|153005788|ref|YP_001380113.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029361|gb|ABS27129.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 623

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 13/255 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+ PL +   +   ++ T+ V AE       EALR  D  K+ F+  +S+ELR+PL  + 
Sbjct: 228 SLFPLDHWNLVAAGIDTTERVAAE-------EALRAEDRRKSEFLAMLSHELRNPLAPMR 280

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
               +L+ +  G+  + +++    I+  +  L  LV+D+LD+  +  G ++L    + L 
Sbjct: 281 TAVAVLERAAPGAPEASRARAA--ITRQTEHLARLVDDLLDVTRIAHGKIRLRTERLDLA 338

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+          +  + + ++V    +    + DR RL Q+   +L+NA  F+ +G  V
Sbjct: 339 ALVRCTADDHRDLLAASGVALRVTGAVEPLPILGDRTRLEQVVGNLLANAGKFTRRGGNV 398

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFI 765
            +   R+    +FSV ++G  I  ++   +F  FV  A  G    R G+GLGL +V S +
Sbjct: 399 TVTLGRERDRAVFSVADDGEGIDPELVPRLFAPFV-QADDGLDRPRGGLGLGLYLVRSLV 457

Query: 766 NLHGGHVSISSSDEG 780
            LHGG V++ S   G
Sbjct: 458 ELHGGSVAVRSGGSG 472


>gi|91227595|ref|ZP_01261899.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|91188488|gb|EAS74781.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
          Length = 806

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 11/227 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     L  +Q +++  +  S   ++ L+N+I
Sbjct: 353 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LTDEQRKHLRTLYDSGDHMMTLLNEI 408

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G ++       +  ++  +K    T   E  +R +V+S    G  +  D+ R
Sbjct: 409 LDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLRFRVVSHLPTGRWYNNDKAR 468

Query: 687 LLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           L Q+   +L+NA+ F+ +G   +    K+++     I  VK+ G  I ++  K +F  F 
Sbjct: 469 LRQVLFNLLNNAVKFTDRGIVEVELAEKSSKAGTKLILKVKDTGIGISKEAQKRIFRPFE 528

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  RR  G GLGL+IV+      GG V + S ++  TT    I
Sbjct: 529 QAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAGTTFTVEI 575


>gi|86747901|ref|YP_484397.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86570929|gb|ABD05486.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 449

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 9/238 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+ +E++  FV + S+ELR+PL  + GF + L+        +++ +++  + A +T + 
Sbjct: 208 LRRVEEMRADFVANASHELRTPLAALSGFIETLQGPARDDAKARE-RFLGIMQAQATRMA 266

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+L L+ V+          I L  L+ +V   +     E  + I++          
Sbjct: 267 RLIDDLLSLSRVELSAHVRPDVQIDLAPLIRQVADGLEPLAKERQVAIEIDMPETPAVIA 326

Query: 682 ADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            DR+ LL++F  ++ NA+ + + G     S   L +     ++  +V++ G  I  +   
Sbjct: 327 GDREELLRVFENLIENALKYGASGGRVAVSVAALASGEGGTEYRVAVRDFGPGIAPEHLP 386

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPSK 791
            +  RF  V       + G GLGLS+V+  +N H G + I S   +G T   C  P K
Sbjct: 387 RLTERFYRVDVGDSRSQGGTGLGLSLVKHIVNRHRGRLLIESVPKKGATFTVCFPPVK 444


>gi|77919955|ref|YP_357770.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77546038|gb|ABA89600.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 827

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQ-SQYVEYISASSTIL 620
           R+ + +K  F+   ++ELR+PLT+I+G+ +  +   + G  +  Q  +++  I   + +L
Sbjct: 595 REMERVKTEFISTAAHELRTPLTSIMGYLEFCMHPEEFGGFSDAQLKEFMTEIYDKAEVL 654

Query: 621 LNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
             +V+D+LD++ ++AG  + L   T+ + ++  ++ Q    +       ++  + G    
Sbjct: 655 ERIVSDLLDISRMEAGREIPLVLETVDVAEISRKLLQHFQLQFPRYRFEMEFAA-GTSHL 713

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             ADR++L+Q+   I+SNA+ +S +G  V +    +   +  SV++ G  +  +  + +F
Sbjct: 714 VRADREKLVQVMENIISNAIKYSQEGKAVRVIGRCEPKCYRISVRDQGIGMTPEQIERMF 773

Query: 740 NRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++F          RG+GLG+ IV+  I  HGG + + S+    T I   +P
Sbjct: 774 DKFYRAVDLNSGVRGLGLGMHIVKHIIERHGGGIEVVSAPGAGTEIIFSLP 824


>gi|238794991|ref|ZP_04638587.1| Sensor kinase protein rcsC [Yersinia intermedia ATCC 29909]
 gi|238725694|gb|EEQ17252.1| Sensor kinase protein rcsC [Yersinia intermedia ATCC 29909]
          Length = 932

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 127/253 (50%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 421 VLVDVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 480

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 481 ---HGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLP 537

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +    + D  RL Q+ S +L+NA+ F+  G  ++    R  GD+
Sbjct: 538 LVVKKRLGLYCFIEPDVPRQMLGDSVRLQQVISNLLNNAIKFTDTGCIIL--QVRVRGDY 595

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           + F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S
Sbjct: 596 LEFRVRDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVVS 655

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 656 ELGMGSIFAIRIP 668


>gi|313200668|ref|YP_004039326.1| histidine kinase [Methylovorus sp. MP688]
 gi|312439984|gb|ADQ84090.1| histidine kinase [Methylovorus sp. MP688]
          Length = 480

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F++HVS+EL++PLT I   ++LL     G+L+ +Q +    +  SS  L  ++ ++L
Sbjct: 253 KQRFLRHVSHELKTPLTAIREGSELLSDEIGGALSPQQKEIANILRESSMRLQKMIENLL 312

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           + + V     +L  S      LL  V  S A  M    I I+   D +     AD +++ 
Sbjct: 313 NYSAVQYQKPQLELSGFDFPTLLENVLNSYALTMSSKQITIE--RDCETVHLKADAEKVA 370

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNA 746
            I   ++SNA+ ++ K  T+ L+  + N   +F V + G  +       +F+ F   +  
Sbjct: 371 TIVDNLISNAIKYTPKSGTIRLRTRQTNDSLVFEVHDGGPGVMAADKAKLFDPFYKGNGV 430

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +     G GLGLSI + +++ HGG + +  S+ G      R+P
Sbjct: 431 YESLVSGSGLGLSIAKEYVDAHGGEIMLLPSEHG-AHFQVRLP 472


>gi|304406284|ref|ZP_07387941.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344868|gb|EFM10705.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 791

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 12/255 (4%)

Query: 544 NVTDSVRAERALTEK--NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           N+   V+   A  E+  +EA+ KA+ IK+ F+ ++S+ELR+PL  IIG++++L       
Sbjct: 272 NLEQLVKERTAQLEQAHDEAI-KANMIKSQFLANMSHELRTPLNAIIGYSEMLAEEAEEL 330

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 + +  I  +   LL L+NDILD++ ++AG M+++  T  L+ L+ +V  ++   
Sbjct: 331 GEQIFVEDLGKIRNAGKHLLTLINDILDISKIEAGKMEIHMETFELSGLIQDVITTVKPL 390

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NG 717
           + +N  ++             D  +L QI   +LSNA  F+  G T+ L+  R+      
Sbjct: 391 IDKNGNKLDXXXXXX--XXXTDITKLRQILINLLSNASKFTQNG-TISLEVNREPRKGRT 447

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            + F VK+ G  +  +  + +F  F+       R+  G GLGL+I  SF  L  G + + 
Sbjct: 448 GYCFRVKDTGIGMSPEQVEKLFQPFMQADSSTTRKYGGTGLGLAISHSFSELMDGSIQVE 507

Query: 776 SSDEGVTTINCRIPS 790
           S     +   C +PS
Sbjct: 508 SEMGAGSIFTCWLPS 522


>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 967

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E   +A   K+ F+ ++S+E+R+P+  ++G  +LL  +    L  +Q ++ + I 
Sbjct: 291 LEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMET---DLTEEQRRFSKTIQ 347

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S + LL ++NDILD + ++AG ++L      L  L+++V Q +A++ H   + + V+  
Sbjct: 348 SSGSSLLAIINDILDFSKIEAGKLELETINFNLQILIDDVMQMLASRAHAKQLELAVLIP 407

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSS 729
            +   F+  D  R  Q+ + ++ NA+ F+ +G  V+  A     ++       +++ G  
Sbjct: 408 PETCIFLRGDPTRFRQVLTNLVGNAIKFTKQGEVVVQVATTVSDQNRVKLHVLIRDTGIG 467

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I +   + +F+ F        R+  G GLGL+I +  + L GG +   S
Sbjct: 468 ISQQDLQRLFSPFSQADGSTTRKYGGTGLGLAISKEIVALMGGDLHCES 516


>gi|242803435|ref|XP_002484173.1| sensor histidine kinase/response regulator Fos-1/TcsA [Talaromyces
           stipitatus ATCC 10500]
 gi|218717518|gb|EED16939.1| sensor histidine kinase/response regulator Fos-1/TcsA [Talaromyces
           stipitatus ATCC 10500]
          Length = 713

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 131/269 (48%), Gaps = 22/269 (8%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKN--EALRKADEIKNSFVQHVSYELRSPLTNI 587
           I P+  A   + FV VT  +  ER   E     A  ++ ++K+ F+ ++S+E+R+P+  +
Sbjct: 295 ITPVYTAGRHVGFVKVTRDL-TERKAAESRLIAAFEESSKLKSDFLANMSHEIRTPMHGM 353

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +    +L  +   +++ KQ +Y+  I  + ++LL ++ND+LD + + +G   +    + +
Sbjct: 354 LMSIQMLAAT---NVDEKQKEYINIIEDTGSVLLQIINDVLDYSKLSSGTFTITPGVVDV 410

Query: 648 NDLLNEVKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            +++  V ++  + +    ++R+   SD        D  R  QI   ++SNA+ F+ +GS
Sbjct: 411 KEVVGAVLRNCQSSVKPGVDLRVH-YSDQLPKHLKGDPLRYRQIIQNLISNAVKFTDEGS 469

Query: 707 T-VILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
             V +K   D  D         V + G  +P D   S+F  F   A   ++R  G GLGL
Sbjct: 470 VEVSVKVTEDPQDSSTYEVTTMVVDTGIGVPVDAANSLFTPFTRFADTSRKRYQGTGLGL 529

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR 787
           SI +S   L  G V  +S+       NCR
Sbjct: 530 SICKSLAELMDGSVGFASNS------NCR 552


>gi|229526741|ref|ZP_04416145.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
 gi|90074862|dbj|BAE87106.1| LuxQ [Vibrio cholerae bv. albensis]
 gi|229336899|gb|EEO01917.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
          Length = 857

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 126/255 (49%), Gaps = 15/255 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           ++T    AE+   +   A R+A+E   ++  F+  +S+ELR+PL  ++G + LLK +   
Sbjct: 455 DITTIAEAEK---QSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT--- 508

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + +    
Sbjct: 509 PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRP 568

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716
             HE  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS  +   L      
Sbjct: 569 LCHEKGLELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPL 628

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +  V + G  I E     +F  F+       R   G GLGL+IV S + +  G + +
Sbjct: 629 AQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688

Query: 775 SSSDEGVTTINCRIP 789
           SS     T    ++P
Sbjct: 689 SSEYGIGTRFEIQLP 703


>gi|326798533|ref|YP_004316352.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
 gi|326549297|gb|ADZ77682.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
          Length = 369

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 125/256 (48%), Gaps = 11/256 (4%)

Query: 541 TFVNVTDSVRA----ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           TF  + +  +A    + AL ++ E  +  +  K+ F+   S+EL++PLT++ G+  LL+ 
Sbjct: 116 TFYRLFEQAQAMHEMQEALKQEIEHRKMLENKKDEFISIASHELKTPLTSVRGYLQLLER 175

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                 N K   Y+   SA    L  L++D+LD++ +++G MK N+  + +  L++   +
Sbjct: 176 LPEAKNNEKFKTYLGKTSAQLNKLRELIDDLLDISKIESGKMKFNFQPVSIEKLISNTLE 235

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-R 714
           +++    E+  +      G++ S + AD  RL Q+    L+NA+ +S     + L+ A  
Sbjct: 236 NVSQMYPEHAFK----RIGQVDSIILADEMRLEQVLINYLTNAIKYSPNSKEIYLETALT 291

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVS 773
           ++      V++ G  IP D    +F++F        + +G+G+GL I +  I  H G   
Sbjct: 292 EDNKIQIGVRDFGIGIPSDKLNHLFDKFYRVEESSYKFQGLGMGLYICKEIIARHHGEHG 351

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +    R+P
Sbjct: 352 VESRLNEGSFFYFRLP 367


>gi|318607514|emb|CBY29012.1| secretion system regulator: Sensor component [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 926

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 118/238 (49%), Gaps = 9/238 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +   A  +A+  K+  +  +S+E+R+PL   +G  +LL+ + L     +Q Q  E  
Sbjct: 383 ALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGAVELLQNTPLA---PEQYQLAETA 439

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671
              S  LL ++N++LD + +++G + L+     L  LL++   +I +++    I +   V
Sbjct: 440 RQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQAMLTIHSQVLNKPIALSTYV 499

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            SD  L     D QR+ QI   +L NA+ F+ +G  + L   R      F+V++ G  I 
Sbjct: 500 SSDVPL-EIELDSQRIKQILVNLLGNAVKFTRQGH-ISLTVERKGQQLCFTVEDTGCGID 557

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + +F  F+       R+G GLGL+I ++   + GG++++ S     +  +  +P
Sbjct: 558 SQHQEKIFRPFIQT--YDHRQGTGLGLTIADNLAKMMGGNITLYSKPNCGSRFSLTLP 613


>gi|316935268|ref|YP_004110250.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315602982|gb|ADU45517.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 1157

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 8/241 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+ ++ E  L     +  KA   K +F+ ++S+E+R+PL  IIG+ DL+   +  +L
Sbjct: 628 VDLTEQLKYENELKAARASAEKAGAAKANFLANMSHEIRTPLNGIIGYADLVLEDQTLAL 687

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++++ Q +    AS ++ + +++DILD + ++A  + L    + +  L++     I  K 
Sbjct: 688 DTRR-QVIRIFEASDSLRV-IIDDILDFSKIEALGVTLESKPLYVEQLIDNCMSIIQRKA 745

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGD 718
            +  + ++V +       + D  RL Q+   +L+NA+ F+  GS       L    D   
Sbjct: 746 EKKGLELRVDAQEIPAVLMGDGARLRQVLLNLLNNAVKFTDAGSVELNVACLSRVGDRAR 805

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
              +V + G  I     K +F RF        R+  G GLGL+I +  +   GG + I S
Sbjct: 806 LRITVTDTGIGISAQDQKGLFKRFSQADETISRKYGGTGLGLAISQRIVQAMGGEIGIDS 865

Query: 777 S 777
           +
Sbjct: 866 A 866


>gi|196035779|ref|ZP_03103182.1| sensor histidine kinase [Bacillus cereus W]
 gi|195991746|gb|EDX55711.1| sensor histidine kinase [Bacillus cereus W]
          Length = 461

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           ++ F+  V++ELR+PLT + G+ D+ LK S   +   ++ QY+  I   S  + NLV D+
Sbjct: 235 RSEFLASVAHELRTPLTYVRGYADIALKES---TSPEQRLQYLSIIKDESDYITNLVQDL 291

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
             LA ++     +    + L+  L  + + +     E  I +       L   + D QR 
Sbjct: 292 FSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNL-DEQRF 350

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+   IL+NA   S + S + +    +N     ++++ G  IP +    +F RF  V  
Sbjct: 351 EQVVVNILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDK 410

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           A      G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 411 ARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLPS 455


>gi|284053811|ref|ZP_06384021.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 784

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 153/350 (43%), Gaps = 45/350 (12%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD---- 495
           ++ L  GV V+  +G I  +N   + L++ E     P   + + A   + Y N +D    
Sbjct: 449 LEALPVGVLVYDKNGNIYYANQKLKDLFRHEH---IPEVSLEDFAGINNLYLNGTDQVYP 505

Query: 496 --GWDLFAA----IITSFDDERK--------SLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                L  A    I+   + E +        SL  T    SD  + Y I           
Sbjct: 506 TKALPLIRALKGKIVPIENIEIRHPDQTICCSLMATPIFDSDEAIVYGIA---------V 556

Query: 542 FVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           F ++T   +AE       + L EKN+AL++ DE+K+ F+ + S+ELR+PL  +IG ++ +
Sbjct: 557 FEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSESM 616

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G L   Q Q +  I+ S   L  LVNDILD + +    ++L    + L +++  +
Sbjct: 617 LDGVGGPLTELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELKLQPLGLREIVEVI 676

Query: 655 KQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              + +K    N  I++I++      +  AD  RL QI   ++ NA+ F+  G+  I  +
Sbjct: 677 --VVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLIGNAIKFTDSGTVKITAS 734

Query: 713 ARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
             D    +   + ++ + G  IP D    +F  F        R+  G GL
Sbjct: 735 VLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTARQYGGTGL 784


>gi|265765124|ref|ZP_06093399.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254508|gb|EEZ25942.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 671

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 124/248 (50%), Gaps = 17/248 (6%)

Query: 549 VRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++  + L E  E LRKA E       +K +F+Q +S+E+R+PL +I+GF+ +L       
Sbjct: 421 IQQNKELVENGEELRKAKEQAENASRMKTTFIQSMSHEIRTPLNSIVGFSQVLSNYFKEE 480

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIAT 660
            N +  ++   I  SS+ LL L+ND+LD++ +D   I+  +    + N  L  ++++  +
Sbjct: 481 DNDEIREFASIIEISSSNLLRLINDVLDISYLDQSEILPYDKPEDINNCCLLSIERTRNS 540

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF 719
              E ++R +  S G L   + + +R+ QI + +L NA+ F+ KG+ T+    +      
Sbjct: 541 IKKEVSLRFEP-SCGPL-MILTNPERVAQILTHLLHNAIKFTDKGNITLAYTISPTEKQI 598

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +++V + G  IP +  + VF RF       Q  G GLGL I        GG + I  +  
Sbjct: 599 VYTVTDTGKGIPVEQQEYVFERFAKLNDFSQ--GTGLGLPICRIIAEKLGGSLIIDKT-- 654

Query: 780 GVTTINCR 787
              T  CR
Sbjct: 655 --YTKGCR 660


>gi|260587732|ref|ZP_05853645.1| sensor protein VanS [Blautia hansenii DSM 20583]
 gi|260541997|gb|EEX22566.1| sensor protein VanS [Blautia hansenii DSM 20583]
          Length = 384

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 125/250 (50%), Gaps = 9/250 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T  V+ +  +  K + L+   + KN  + +++++L++PLT+++G+ +LL+ +    L ++
Sbjct: 140 TQLVQIKADMERKEQYLKMETQKKNDLITYLAHDLKTPLTSVMGYLNLLEDAPDMPL-AQ 198

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE- 664
           + +Y       +  L +L+ +  ++   +   + L    I L  +L ++K+     + + 
Sbjct: 199 REKYTHIARKKAERLDSLIQEFFEITRYNLQNITLEKENIDLYYMLIQMKEEFYPVLAQK 258

Query: 665 -NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N I +KV  D ++     D  +L ++F+ I+ NA+ +S   S + ++  +++       
Sbjct: 259 GNTIELKVPEDLQV---YGDADKLARVFNNIIRNAVSYSYPSSVITIEGEKNSDGVCLFF 315

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +N G +IP++    VF +F  +  A      G GLGL+I +  + LHGG +S  S  E  
Sbjct: 316 RNKGKTIPKEKLSRVFQKFFRIDEARSSDSAGSGLGLAIAKEIVELHGGSISAISEQEE- 374

Query: 782 TTINCRIPSK 791
           T     +P K
Sbjct: 375 TVFQIVLPEK 384


>gi|220917584|ref|YP_002492888.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955438|gb|ACL65822.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 761

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAE  L + N  L +AD  K+ F+  +S+ELR+PL  I   + +L+ +  GS  + ++Q 
Sbjct: 386 RAEAELRDANAKLVEADRRKDEFLGMLSHELRNPLAPIRNSSFILRHAAPGSDAASRAQQ 445

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I   +  L +LV+D+LD+  +  G ++L  ST+ L +++    +     + +  +  
Sbjct: 446 V--IERQTGHLTHLVDDLLDVTRISRGKIELRRSTVDLREVVLRAAEDFRLPLDDRGVSF 503

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +  + +  + + V D  R+ Q+   +L+NA  F+ +G  VI+    + G+    V++ G+
Sbjct: 504 RASVPEAPVRAHV-DATRITQVVGNLLTNAAKFTRRGDEVIVSLTVEEGEAAIRVRDTGA 562

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
            I   +  S+F  FV       R   G+GLGL++V     LHGG  S++S  +G
Sbjct: 563 GIDPAILASIFQPFVQGERTLARSEGGLGLGLALVRGIAELHGGAASVTSEGKG 616


>gi|160898521|ref|YP_001564103.1| histidine kinase [Delftia acidovorans SPH-1]
 gi|160364105|gb|ABX35718.1| histidine kinase [Delftia acidovorans SPH-1]
          Length = 1088

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 11/246 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+  F +V+     E  L     A  +A+E K++F+  +S+E+R+PL    G    L+  
Sbjct: 470 TLCVFADVSARAEIESNLERARIAADEANEAKSTFLATMSHEIRTPL---YGALGTLELL 526

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            L  L   Q +YV+ I ASS+ILL +++DILD + ++A  ++L  +     +L+     S
Sbjct: 527 GLTELTQLQRKYVDRIEASSSILLQIISDILDTSKIEADQLQLEKAPFNPRELVQNCTSS 586

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
            A    +N + +    D ++  S + D  R+ QI   ++SNA+ F+  G  ++    +  
Sbjct: 587 YAAMAQQNGLLLFSCVDAQVPESVLGDAVRIRQILGNLISNAIKFTEAGHVIVRLRSVPG 646

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
                  +F V + G  I + +   +F  F  V N+ R   RG GLGLSI  S   +   
Sbjct: 647 TASQVRLVFEVCDTGVGIEKSLHGELFTPFYLVKNSSR-TARGAGLGLSICWSLARMMSS 705

Query: 771 HVSISS 776
            + + S
Sbjct: 706 SIEVWS 711


>gi|297580226|ref|ZP_06942153.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
 gi|297535872|gb|EFH74706.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
          Length = 857

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 126/255 (49%), Gaps = 15/255 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           ++T    AE+   +   A R+A+E   ++  F+  +S+ELR+PL  ++G + LLK +   
Sbjct: 455 DITTIAEAEK---QSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT--- 508

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + +    
Sbjct: 509 PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRP 568

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDN 716
             HE  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS  +   L      
Sbjct: 569 LCHEKGLELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPL 628

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +  V + G  I E     +F  F+       R   G GLGL+IV S + +  G + +
Sbjct: 629 AQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688

Query: 775 SSSDEGVTTINCRIP 789
           SS     T    ++P
Sbjct: 689 SSEYGIGTRFEIQLP 703


>gi|330808999|ref|YP_004353461.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377107|gb|AEA68457.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1239

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 12/238 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYIS 614
           +N+A   A++ K+ FV  VS+ELR+PLT I     L    +L +  +  + +   V+   
Sbjct: 543 RNQA-ETANQAKSDFVATVSHELRTPLTLI-----LAPLEQLSAATTPPADWHVQVDRAQ 596

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  L+N VNDILD +  +AG  +L    + LN  +  + +  A         +    D
Sbjct: 597 RNALRLMNRVNDILDFSKAEAGKFELCPMPVDLNKTVGVLAEDAAMVAEGKGCTLTCSID 656

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPED 733
             LG+   D +   +I   ++SNA+ F+  G TV L   A D   F F+V+++G  I  D
Sbjct: 657 PALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLTVTALDGERFEFAVQDSGIGIAPD 716

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RF  + N+      G G+GL++V+  + L GG V ++S     +    R+P
Sbjct: 717 KLPLLFQRFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVGVNSEPGQGSCFFVRLP 774


>gi|320162058|ref|YP_004175283.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995912|dbj|BAJ64683.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 380

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L K + ++   +  V++ELR+PL  I G+ + L    + +  +   Q  + I+     
Sbjct: 146 DKLEKTETMRRQLIGDVAHELRTPLAAIKGYIEGLMDGVIPAEGNTYQQIHDEINR---- 201

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV+D+ +L+ V++G   L    + L+DL++ ++     +     I+ ++  +  L  
Sbjct: 202 LQRLVDDLQELSRVESGAFHLKPELVSLSDLMDTIQNIFVPQFIHKGIQFQIQIEPNLPP 261

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D+ R+LQ+ + ++ NA+ ++  G  V ++ ++   + + SV + G  I  +    +F
Sbjct: 262 VLIDKDRILQVLTNLVGNALQYTPSGGKVTVQISKQRTEILISVSDTGIGISPEHLPFIF 321

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           NRF        R   G G+GL+I ++ +  H G +   S  EG
Sbjct: 322 NRFYRTDKSRARASGGSGIGLTIAQALVKAHHGRIWAESGGEG 364


>gi|298248922|ref|ZP_06972726.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546926|gb|EFH80793.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 485

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 9/237 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ ++ K+ F+   S+ELR+PLT +   T L+          + +  +  +     
Sbjct: 251 NSARKELEQHKDDFINMASHELRTPLTVVKMQTQLVHKRLEKHSQHEAATTLSRVERPIE 310

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+ ++LD++ + AG +K     + L+ LL E   +  T  H +     V+      
Sbjct: 311 QLERLIGELLDVSQMQAGRLKYVRERVDLDALLRE---ATDTMQHMSPSHTIVVRGSIQT 367

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S + DR RL Q+ S +LSNA+ +S    TV ++ +         V ++G  IP +    +
Sbjct: 368 SVIGDRDRLEQMLSNLLSNAIKYSPDAKTVEVELSTSESAVTIRVIDHGLGIPREQRDKI 427

Query: 739 FNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF  +A  G R+    G+G+GL IV   +  HGG +++ S     +T     P +
Sbjct: 428 FERFYRDA--GLRQHAVPGLGMGLYIVAEIVKHHGGTITVDSDVGKGSTFTVTFPRR 482


>gi|237745636|ref|ZP_04576116.1| signal transduction histidine kinase [Oxalobacter formigenes
           HOxBLS]
 gi|229376987|gb|EEO27078.1| signal transduction histidine kinase [Oxalobacter formigenes
           HOxBLS]
          Length = 577

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 15/226 (6%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS---KLGSLNSKQSQYVEYISASS 617
           A   A   K+ F+  +S+E+R+P+  IIG T + + S   K   LNS     ++ I  SS
Sbjct: 189 AAENASREKSEFLSRMSHEIRTPMNGIIGMTKMARMSVDDKNKLLNS-----LDKIDFSS 243

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             LL L+NDILD+A +++G ++L      L  L++ ++     K  +N +  +V   D  
Sbjct: 244 RFLLALINDILDMARIESGKVELYNQPFDLLHLVDGIEIMFRQKAVDNQVTFRVNTHDLS 303

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFI---FSVKNNGSSIP 731
           +   V D  R+ QI   ++SNA+ F+  G  V+L  KA R +G+ +   F + + G  + 
Sbjct: 304 VPGVVGDELRINQIIINLVSNALKFTPAGGQVMLDIKAHRTSGNAVRLEFRISDTGIGMS 363

Query: 732 EDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776
           E+  + +F  F   +    Q  G GLGL+I  + +++  G ++++S
Sbjct: 364 EEFMQRMFEPFEQASESAMQYGGTGLGLAICHNLVHMMNGTINVTS 409


>gi|229058197|ref|ZP_04196585.1| hypothetical protein bcere0026_13120 [Bacillus cereus AH603]
 gi|229132368|ref|ZP_04261222.1| hypothetical protein bcere0014_13040 [Bacillus cereus BDRD-ST196]
 gi|228651074|gb|EEL07055.1| hypothetical protein bcere0014_13040 [Bacillus cereus BDRD-ST196]
 gi|228720061|gb|EEL71645.1| hypothetical protein bcere0026_13120 [Bacillus cereus AH603]
          Length = 603

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 15/247 (6%)

Query: 543 VNVTDSVR----AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           VN+ D +     A   L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + ++   
Sbjct: 351 VNLKDRIDRLNVANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIQDGV 410

Query: 599 LGSLNSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                SK + Y   +    T  +N L+ ++L+LA +++G  KL  ST  + +L+ +V   
Sbjct: 411 -----SKDTTYYTNVILEETDNMNRLIVEMLELAKLESGTYKLEMSTFSIGELIQQVYTK 465

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +   M E ++++ + +D  L  FV A+R R+ Q+   +LSNA+ ++  G  + +      
Sbjct: 466 LLFSMEEKHLQVDIHADSSL--FVKANRSRIEQVVVNLLSNAIRYTPDGEKIHVSVIETE 523

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSI 774
                 ++N G+ IPE+  + +++RF   +A R +   G GLGLSIV++ ++LH     +
Sbjct: 524 DTVKIKIENTGNPIPEESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGV 583

Query: 775 SSSDEGV 781
            ++   V
Sbjct: 584 YNTTNSV 590


>gi|196228883|ref|ZP_03127749.1| integral membrane sensor signal transduction histidine kinase
           [Chthoniobacter flavus Ellin428]
 gi|196227164|gb|EDY21668.1| integral membrane sensor signal transduction histidine kinase
           [Chthoniobacter flavus Ellin428]
          Length = 406

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 6/234 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASS 617
           N+ LR   E+KN+ V  V++ELR+PL  +    D L+  +    N +Q  +Y++ + + +
Sbjct: 172 NQQLR-LHELKNTSVATVAHELRTPLATMRVLVDTLREGRYR--NEEQLREYLDLLHSEN 228

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L    L  + +  G  +  ++ +  + + N    S+  K+        +  +  L
Sbjct: 229 LRLSRLTEHFLTHSRLARGQYQFTFAPVRADSIANHALNSLQPKLSAPGCSFTLDVEKSL 288

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              +ADR  L+ +   +L NA+ ++     + L+A RD+   +F V++NG  +     K 
Sbjct: 289 PPVMADRDSLVTVLINLLENALKYTGDEKRITLRARRDDDTLVFIVEDNGVGLTATQRKQ 348

Query: 738 VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F     +    R GVGLGLSIV + ++ H G + I+S        +  IP
Sbjct: 349 IFEPFYQADQKLSRSRSGVGLGLSIVRAIVSAHRGRIEIASEPNRGAAFSVHIP 402


>gi|311747684|ref|ZP_07721469.1| sensor histidine kinase/response regulator fusion protein
           [Algoriphagus sp. PR1]
 gi|126575672|gb|EAZ79982.1| sensor histidine kinase/response regulator fusion protein
           [Algoriphagus sp. PR1]
          Length = 981

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 14/242 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSL 602
           ++++    E  L E      KA +IK+ F+  +S+ELR+PL  I G    LL+       
Sbjct: 587 DISEQKEFENKLNEARMTAEKASQIKSEFLSMISHELRTPLNAISGSVYSLLQEET---- 642

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           NS Q   +  I+ +   L+ ++ND+LD   ++AG + +        +L+N++ + ++   
Sbjct: 643 NSSQESALNTINFAVDNLIIMINDLLDFQKIEAGKLTIEKEPFQFQNLINQIIKGLSFHA 702

Query: 663 HE--NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILK-AARDN 716
            +  NN+ +  IS+G       D+ RL QI + +++NA+ F+++G    TV LK ++ + 
Sbjct: 703 GDSKNNLNLH-ISEGLEIWLKGDKTRLSQILNNLITNALKFTNEGDVDVTVKLKESSNEK 761

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               F VK++G  I ++    +FN F  V      +  G GLGLSI    + L GG + +
Sbjct: 762 AKVYFEVKDSGIGIAKENQDKIFNDFDQVRPTFSTKYGGTGLGLSITRKLLQLMGGTIQL 821

Query: 775 SS 776
            S
Sbjct: 822 ES 823


>gi|119898693|ref|YP_933906.1| putative sensor-regulator protein [Azoarcus sp. BH72]
 gi|119671106|emb|CAL95019.1| putative sensor-regulator protein [Azoarcus sp. BH72]
          Length = 1012

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 12/245 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVE 611
           R L+      ++A   K+ F+  +S+E+R+P+  +IG T L L+T     L+ +Q  Y+ 
Sbjct: 262 RQLSIATAEAQQASRAKSDFLARMSHEIRTPMNAVIGLTHLALRTE----LSPQQRDYLR 317

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  LL ++NDILD + ++AG ++L      L+D+++ +   +  K  E  + + +
Sbjct: 318 KIRGSSQALLGIINDILDFSKIEAGKLRLEQIPFTLHDVIDNLSNIVTVKAAEKGLDVLL 377

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
             D  +   +  D  RL QI   + +NA+ F+ +G  V+    +    D     FSV + 
Sbjct: 378 AIDPAIPDRMRGDPLRLSQILINLGTNAVKFTERGEVVVDCRLIDKTEDCVRVRFSVTDT 437

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I       +F  F        RR  G GLGL+I +  I +  G + ++S     +T 
Sbjct: 438 GIGISAAQRGLLFQSFHQADGSITRRFGGTGLGLAISKQLIEIMEGSLEVASEPGEGSTF 497

Query: 785 NCRIP 789
           +  IP
Sbjct: 498 SFVIP 502


>gi|90425417|ref|YP_533787.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris BisB18]
 gi|90107431|gb|ABD89468.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris BisB18]
          Length = 1188

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 158/341 (46%), Gaps = 30/341 (8%)

Query: 437  GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            G  +D  +EG+ +F  +G++ + N +  +L+    + L     I   A    R       
Sbjct: 826  GAILDTTAEGIVMFDAEGQLHVCNRSAEALFGYPGDNLVQRNLIELFAPESQRVL----- 880

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-----------PNAQTMLTFVNV 545
             D   AI +  D     L    E+L   V E  +IPL           PN      F ++
Sbjct: 881  LDYIEAIKS--DGAASLLDPGREVLG-RVREGGLIPLSAIIGRTRHDGPN--YFAVFRDL 935

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            + + + E  L +      +A   K   +  +S+E+R+PL  I+GFT+++   + G+L ++
Sbjct: 936  SQAKKTESELIQARRQAERAANAKADVLARLSHEIRTPLNAILGFTEVMIEERFGALGNE 995

Query: 606  QSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +  YVEY   I AS   ++ +V+D+LDL+ ++ G ++L ++   LN+L+ +    +  + 
Sbjct: 996  R--YVEYMKDIRASGERVIAIVSDLLDLSRIETGKLELAFAPQHLNELVEQCVGVMQPQA 1053

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIF 721
            +   I I+     +L + VAD Q L QI   ++  ++  ++ G  VI+  A  D GD + 
Sbjct: 1054 NRERIIIRTSLAHQLPNVVADAQALRQITLNLIGTSIHLANAGGQVIVSTALSDFGDVML 1113

Query: 722  SVKNNGSSIPEDMCKSVFNRF---VSNAHRGQRRGVGLGLS 759
             V++ GS + E    +    F     + H  +  GV L L+
Sbjct: 1114 RVRDTGSRLNEHELAAAMEPFRTAPPSDHSSEAPGVSLSLT 1154


>gi|313672756|ref|YP_004050867.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939512|gb|ADR18704.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 331

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 116/223 (52%), Gaps = 7/223 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  + ++ E LR ++E   +F   VS++L++PL  I+GF+ +L+       + +  + ++
Sbjct: 91  EETVLKRTEDLRASNETLEAFAYSVSHDLKAPLRAIVGFSKILEEDYAEKFDDEAKRVIK 150

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++T +  L+NDIL L+ V    +K+ +S I +  L+ ++ + +       + RI++
Sbjct: 151 VIKDNATKMDQLINDILSLSMVQR--VKITFSKIDMKHLIRDIIEQLGEIYVLKHYRIEI 208

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFI-FSVKNNGSS 729
              GK+   + D   + Q+F  IL NA  +SSK     I   +R  GD+I + V++NG  
Sbjct: 209 ---GKIYDCLGDPVLIKQLFYNILDNAFKYSSKSDIPEISIDSRIEGDYIVYKVEDNGIG 265

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                   +FN F       + +G G+GLS+V++ +  H G +
Sbjct: 266 FDNMYVDKIFNLFSRLNSSSEYQGTGIGLSVVKTIVQRHLGSI 308


>gi|312130844|ref|YP_003998184.1| integral membrane sensor signal transduction histidine kinase
           [Leadbetterella byssophila DSM 17132]
 gi|311907390|gb|ADQ17831.1| integral membrane sensor signal transduction histidine kinase
           [Leadbetterella byssophila DSM 17132]
          Length = 342

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++ ERA     +   K  E+ N+ +  +S+EL++P++ IIG  DLLK   L    +++S 
Sbjct: 103 LKTERAKIRDQKEREKTLELYNTVLNSLSHELKTPISAIIGGVDLLKDGNLAP--AQRSM 160

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I   +  L   V  +L+++ +++G +KL Y    +N+++  V +    KM + ++R
Sbjct: 161 VLKEIETGALRLNTQVESLLNMSRLESGTLKLKYDWTDINEMIFGVIE----KMSKEHLR 216

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
                   L     D   +  +   ++ NA  +S  G  V L A   N   + +V++ G 
Sbjct: 217 KIDFEPIDLPLVKLDVGLIELVLLSLIRNAFRYSIPGGKVCLSAQITNDQLVLTVEDEGP 276

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            IPE+  + VF +F   + +G   G GLGL+IV+  ++ HGG + I
Sbjct: 277 GIPEEEREKVFQKFYRLSLKG---GTGLGLAIVQGIVDAHGGKIRI 319


>gi|326317128|ref|YP_004234800.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373964|gb|ADX46233.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 663

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 23/249 (9%)

Query: 547 DSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           DS R E  + E+ +A R   E     K+ F+  +S+ELR+PL  I G+  +LK       
Sbjct: 260 DSRRQE--VLEREQAARATAERLSRTKDDFIAVLSHELRTPLNAIAGWVHILK------- 310

Query: 603 NSKQSQYVEYISASSTILLN------LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             ++    E I    +I  N      +++DILD++ +++G + L        +++     
Sbjct: 311 --RRGGTPELIKGLDSIHRNVKAQARIISDILDVSRINSGKLHLEREWTQPAEVVRSAID 368

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++   + E ++ I + +   +G    D  R  QIF  +L+NA+ FS+    + +  +R  
Sbjct: 369 ALQASIAEKHLEIVLTAGEDIGPAWLDPTRFQQIFWNLLTNAIKFSNDSGRIDVSMSRAG 428

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                +V++ G  I  +  + +F+RF  +     RR  G+GLGLSIV+    LHGG V  
Sbjct: 429 DALTLTVQDFGRGISPEFIEHLFDRFTQSDSPDNRRHGGLGLGLSIVKHLAELHGGGVEA 488

Query: 775 SSSDEGVTT 783
            S+  G  T
Sbjct: 489 YSAGTGEGT 497


>gi|224535490|ref|ZP_03676029.1| hypothetical protein BACCELL_00353 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522883|gb|EEF91988.1| hypothetical protein BACCELL_00353 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 754

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 124/254 (48%), Gaps = 8/254 (3%)

Query: 526 LEYSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Y  I LP    +     +N+      E+ L E      KA E+K SF+ ++S+E+R+P
Sbjct: 485 FRYKTILLPGGGYKAAGLLLNIQAIKDREQELEEARLLAEKA-ELKQSFLANMSHEIRTP 543

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+GF+++L     G    ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M   Y 
Sbjct: 544 LNAIVGFSNILALDD-GVSPEERLEYIGSINKNSDLLLKLINDILELSRIESGYMSFEYE 602

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +++L++ +  +    + E    IK + D      + D+ RL Q+ +  L+NA  F+ 
Sbjct: 603 KCFVSELVDSIYMTHQMLISEQLEFIKEL-DAVQVEVMVDKGRLTQVITNFLNNASKFTK 661

Query: 704 KGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            G   +  +   ++      V++ G  I     K +F+RF       Q  G GLGLSI +
Sbjct: 662 TGYIKLGYRYLSESDRVAIYVEDTGRGIELSEQKMIFSRFYKQDEFSQ--GAGLGLSICQ 719

Query: 763 SFINLHGGHVSISS 776
             +    G + + S
Sbjct: 720 VIVEKLRGKIELWS 733


>gi|186681899|ref|YP_001865095.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464351|gb|ACC80152.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 444

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 2/229 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  +  +N  L +A  +K+ F+  +S+ELR+P+  IIGF+ +L   K G L+++Q+  
Sbjct: 155 RQQEQIQMQNFKLLEASRLKSHFLATMSHELRTPMNAIIGFSQILLRPKFGQLSNQQADM 214

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  +   LL L+N++LD + ++ G + L      ++ ++N     + +      + +
Sbjct: 215 VERILNNGKHLLMLLNEVLDFSKLEIGRLDLKAEIFDVSKVINLAVGEMRSLADAKKLSL 274

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V +D +      D  R+ QI + +LSNA+ F+  G   +             V++ G  
Sbjct: 275 LVQNDLQNPFIFNDPVRIRQILTNLLSNAIKFTESGEIWVEVKELPTNQVAIIVRDTGIG 334

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I     K +F  F        R+  G GLGL+IV+S + + GG + + S
Sbjct: 335 IASRDFKRIFEAFRQVDQTITRKYPGTGLGLAIVDSLVRMMGGKIFLES 383


>gi|323702488|ref|ZP_08114152.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532627|gb|EGB22502.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 487

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 116/238 (48%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L K ++I+  FV +V++E+++PL  + GFT+ +    L     ++ +Y+  I 
Sbjct: 245 LQEKISQLEKQEQIRREFVTNVAHEIKTPLAVMQGFTETM-IDGLVKTEQERDEYLNNIL 303

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  LVN++LDL  ++ G    +     L ++++ V++ +     E +I  ++  +
Sbjct: 304 EEINRLKRLVNEVLDLKRMEEGHFDFDQEPCDLREIIDRVRRKLTQLAVEKDIHFEIGVE 363

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PED 733
             L     +  R+ Q+   ++ NA+  +  G  VIL+ +         + + G  I PED
Sbjct: 364 KNLPLVTCNSDRIEQVLINLIDNAIRHTHTGGRVILRVSSKANQVHLRISDTGEGIAPED 423

Query: 734 MCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   ++ RF     +    R G GLGL+IV+  +  HGG +++ S     TT N  +P
Sbjct: 424 L-PMIWERFYKGDKSRTRARGGTGLGLAIVKMIVEGHGGQINVDSKLNVGTTFNIVLP 480


>gi|297567023|ref|YP_003685995.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296851472|gb|ADH64487.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 475

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 13/228 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVE 611
           RAL      L ++ E +  F+   S+ELR+P+T I+G    LL+ +    L  +Q + +E
Sbjct: 234 RALNGMLARLEESWETQTRFLADASHELRTPVTAILGHVSYLLRRT---PLTEQQRESLE 290

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-IRIK 670
            +      +  LV D+L+L+    G  ++  S + L+ LL E+ +       +   I+++
Sbjct: 291 IVRREGERMKKLVGDLLELSKT-GGTWRVELSPVHLHTLLAEIAEEYGQSFPQGGRIQLE 349

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V  D  +   + D +RL Q+F+ ++SNA    ++ S + L A       +  V++NG  I
Sbjct: 350 VPEDLWV---LGDVERLHQVFANMVSNAQ--KAQASEIRLVARDLQERVVIRVEDNGEGI 404

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           P +    +F RF  V  A   +R G GLGLSIV++ +  HGG V + S
Sbjct: 405 PPEHLPHLFERFYRVDKARDRERGGSGLGLSIVKAIVEAHGGSVWVES 452


>gi|218516447|ref|ZP_03513287.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli 8C-3]
          Length = 369

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 9/212 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591
           A   L   +V   V  ER L +  E  R+  E     K+  +  VS+E+R+PL+ I+G T
Sbjct: 160 ADGRLLLHSVARDVTEERLLAQGREQARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMT 219

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  ++L     +Q  Y+  I  S   L  LV D+LD +T++ G  +L+  +  L  LL
Sbjct: 220 HLLAETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFELHPRSESLRKLL 276

Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V + +A + HE  I I   +S     +   D  RL Q+   ++ NA+ F+  G  V +
Sbjct: 277 ESVVEMLAHRAHEKGIEIGATVSSDVPQNMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 335

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           + + D G+ + +V ++G  +  +    VF  F
Sbjct: 336 RVSLDAGNLLITVADSGPGMTAEEQARVFGEF 367


>gi|154482552|ref|ZP_02025000.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC
           27560]
 gi|149736577|gb|EDM52463.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC
           27560]
          Length = 436

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQSQYVEYISA 615
           +++AL+K+ +++  F  +VS+EL++PL +I G+ +L++T  +K G +      +   I  
Sbjct: 201 QHKALKKSSKMRQEFTANVSHELKTPLASISGYAELIETGMAKEGDI----QHFASEIHK 256

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  LL+L+NDI++L+ +D    +L+ + + LN+ +      +     ++NI I      
Sbjct: 257 SANRLLSLINDIIELSQLDVMDHQLSTTNVSLNEEVVSCVDMLQMNAEKHNITIATDIIE 316

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K     A+++ + ++   +  NA+ ++     V     + + + I  VK++G  IPED  
Sbjct: 317 KDCIIKANQEMIQEVIYNLCDNAIRYNKPEGHVWASVFKKDDNIILQVKDDGIGIPEDDL 376

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
             +F RF  V  A   +  G GLGL+IV+     H   + I S+  EG T
Sbjct: 377 NRIFERFYRVDKARSKKTGGTGLGLAIVKHISEQHEAEIQIDSTLGEGTT 426


>gi|298292394|ref|YP_003694333.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
 gi|296928905|gb|ADH89714.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
          Length = 1129

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 124/250 (49%), Gaps = 14/250 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    R +  L +  EA   A+  K+ +V  +S+ELR+PL  I+G+  LL
Sbjct: 643 NRQTALLMREIEAHKRTDAKLQKAKEAAEAANLAKSRYVVGISHELRTPLNAILGYAQLL 702

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     S+   +   +  +  S+  L  L++ +LD++ ++AG + L    + + D L+++
Sbjct: 703 ERDT--SIPPHRRDAIRVVRRSAEHLSGLIDGLLDISKIEAGRLHLTRDEVRIADFLDQL 760

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     I    +   +L + V  D +RL Q+   +LSNA+ F+ +G  V L+ +
Sbjct: 761 VDMFRLQATAKGIDFVYVRPDRLPAVVYTDEKRLRQVLINLLSNAIKFTDRGR-VALRVS 819

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR------RGVGLGLSIVESFINL 767
             N    F V+++G  IP    + +F  F     RG+R       G+GLGL+I +    +
Sbjct: 820 YRNQVAEFEVEDSGIGIPAADHRRIFEPF----ERGERAGTYSTAGIGLGLTITKLLTEI 875

Query: 768 HGGHVSISSS 777
            GG +S++S+
Sbjct: 876 MGGEISLTST 885


>gi|229099892|ref|ZP_04230815.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
 gi|229118955|ref|ZP_04248300.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228664480|gb|EEL19976.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228683507|gb|EEL37462.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
          Length = 613

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L
Sbjct: 383 RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALL 441

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            L+ +D+   +L    +   D  N V         E N+  K  S  K   F+  D  ++
Sbjct: 442 QLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKI 499

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VS 744
            Q+   I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V 
Sbjct: 500 TQVLYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVD 558

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            A   Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 559 KARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|121585863|ref|ZP_01675657.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|121550001|gb|EAX60019.1| sensor histidine kinase [Vibrio cholerae 2740-80]
          Length = 736

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 19/244 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 335 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 387

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +K   ++
Sbjct: 388 --TSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSS 445

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714
              E  ++ ++   I+DG+   +  D+ RL QI   +LSNA+ F+  G   I    ++  
Sbjct: 446 LCVEKGLKFQLNSEITDGRW--YYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCD 503

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 504 EENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTV 563

Query: 773 SISS 776
            + S
Sbjct: 564 LVQS 567


>gi|312130582|ref|YP_003997922.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907128|gb|ADQ17569.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1365

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 15/262 (5%)

Query: 539  MLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++ +  +   +  E AL   +NE  R+ +EIK +F   +S+E R+PLT I+     + + 
Sbjct: 818  IVKYTKIKSRLEHELALEHLENERQREINEIKLNFFTSISHEFRTPLTLILAPVQHMLSQ 877

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              G+L+    + +  +  +S  LLNLVN +LD    ++G   LN +   ++  L+++   
Sbjct: 878  --GNLDESSKKLMTTVKNNSLRLLNLVNQLLDFRKQESGTYTLNKAHQDMSSFLDQIAME 935

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKA 712
                  E  I               DR  + ++   +LSNA  F      V     +   
Sbjct: 936  FTHYAKERGINFFYEKPYSTMMVEVDRDEMEKVIYNLLSNAFKFVPSYGIVKMDMEVEAP 995

Query: 713  ARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
            +RD   G  +  V +NG  IPE    S+F+ F  +   G   G G+GL++ ++   LHGG
Sbjct: 996  SRDFPEGSVVIRVWDNGPGIPEGERSSIFDFFYQS---GNHSGSGIGLALAKNITELHGG 1052

Query: 771  HVSISSSDEGV--TTINCRIPS 790
             +S+ S  E V  T  +  +PS
Sbjct: 1053 KISVDSCTEDVTYTCFSVHLPS 1074


>gi|253681304|ref|ZP_04862102.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253562542|gb|EES91993.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 469

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 111/214 (51%), Gaps = 3/214 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           ++L + +E +  F+ +VS+ELRSP+T+I GF   +    +     K++ Y+         
Sbjct: 238 KSLEEVEENRRVFISNVSHELRSPITSIKGFIGGILDGVIPK--EKENYYLSVAYEEIQR 295

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ND+LDL++++AG   LN     +N+++        T +    I ++V  D +  S
Sbjct: 296 LTRLINDLLDLSSIEAGKFVLNVKEEDINEIIRLSIIKFETVIKSKKINVEVWLDEERLS 355

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + DR +++Q+ + ++ NA+ +  +   + ++          SV N+G +I E+  K ++
Sbjct: 356 VLVDRDKIIQVITNLIDNAIKYGKEEGNIEIRTKVKGQKVFVSVYNDGPNISEEDGKYIW 415

Query: 740 NRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +RF   +  R  +   GLGLSIV   +  HGG V
Sbjct: 416 DRFYKGDKSRTLKVSTGLGLSIVRRIVTQHGGDV 449


>gi|229166404|ref|ZP_04294160.1| hypothetical protein bcere0007_13760 [Bacillus cereus AH621]
 gi|228616978|gb|EEK74047.1| hypothetical protein bcere0007_13760 [Bacillus cereus AH621]
          Length = 603

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 15/247 (6%)

Query: 543 VNVTDSVR----AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           VN+ D +     A   L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + ++   
Sbjct: 351 VNLKDRIDRLNVANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIQDGV 410

Query: 599 LGSLNSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                SK + Y   +    T  +N L+ ++L+LA +++G  KL  ST  + +L+ +V   
Sbjct: 411 -----SKDTTYYTNVILEETDNMNRLIVEMLELAKLESGTYKLEMSTFSIGELIQQVYTK 465

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +   M E ++++ + +D  L  FV A+R R+ Q+   +LSNA+ ++  G  + +      
Sbjct: 466 LLFSMEEKHLQVDIHADSSL--FVKANRSRIEQVVVNLLSNAIRYTPDGEKIHVSVIETE 523

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSI 774
                 ++N G+ IPE+  + +++RF   +A R +   G GLGLSIV++ ++LH     +
Sbjct: 524 DTVKIKIENTGNPIPEESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGV 583

Query: 775 SSSDEGV 781
            ++   V
Sbjct: 584 YNTTNSV 590


>gi|227820411|ref|YP_002824382.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227339410|gb|ACP23629.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 1126

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 124/253 (49%), Gaps = 4/253 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    +    + + AL    EA   A+  K+ +V  +S+ELR+PL  ++G+  +L+ 
Sbjct: 645 QNTLLLKEIAAHKKTDAALQNAKEAAESANRAKSRYVVGLSHELRTPLNAVLGYAQILER 704

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  ++ S +   ++ I  S+  L  L++ +LD++ ++AG +++  + I ++D L+++  
Sbjct: 705 DE--TIPSSRQGAIKVIKRSADHLSGLIDGLLDISKIEAGKLQVYSNEINIHDFLDQIVD 762

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     I  +      L  +V  D +RL QI   +LSNA+ F+ +G  +    A  
Sbjct: 763 MFRPQAQAKGIGFEHNRGPTLPQYVRTDEKRLRQILVNLLSNALKFTDQG-LIRFDIAYR 821

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +    F+++++G  I +     +F+ F       +  G+GLGL+I        GG +S++
Sbjct: 822 SQVATFTIEDSGRGISDKDLPKIFDPFQRGDAEHRMPGLGLGLTITRLLTQTLGGEISVT 881

Query: 776 SSDEGVTTINCRI 788
           S  +  T    R+
Sbjct: 882 SEKDKGTAFRVRL 894


>gi|225619868|ref|YP_002721125.1| signal transduction histidine kinase [Brachyspira hyodysenteriae
           WA1]
 gi|225214687|gb|ACN83421.1| Signal transduction histidine kinase [Brachyspira hyodysenteriae
           WA1]
          Length = 579

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 137/263 (52%), Gaps = 25/263 (9%)

Query: 526 LEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E SIIP+ N +    ++ F +VTD              +RK +  K  F  + S+EL++
Sbjct: 313 IEISIIPIRNNENISALIKFEDVTD--------------IRKVEIEKQDFFINASHELKT 358

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT+IIG+++LL  +  G     Q+ +++ I+  +  + +LV D+L L+ ++A   +   
Sbjct: 359 PLTSIIGYSELLIATGGGK---NQADFIKRINNEALRMKDLVIDMLTLSRIEANWKETVD 415

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             I + D++ +V +S   K  + NI +++  D +    +A+++++ ++ + ++ NA+ ++
Sbjct: 416 EEIDIKDIVLDVFESNRIKSEQRNIDVEL--DIESAVIMANKEKITEVVNNLVDNAIKYT 473

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
                V +    ++   IFSVK+ G  I       VF RF  V N    +  G GLGL+I
Sbjct: 474 DDDGKVKIYLKNNSDKAIFSVKDTGCGIAPQYLNRVFERFFRVKNNKYLKVHGTGLGLTI 533

Query: 761 VESFINLHGGHVSISSSDEGVTT 783
           V++  N +   + I  S+E V T
Sbjct: 534 VKNICNYYNADIHI-KSEENVGT 555


>gi|217423576|ref|ZP_03455077.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           576]
 gi|217393434|gb|EEC33455.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           576]
          Length = 436

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT+    L + D ++  FV +VS+EL++PLT + GF + ++   L   + ++++Y+E + 
Sbjct: 193 LTQDITELERTDAMRRDFVANVSHELKTPLTVLSGFLETMRELPLS--DDERARYLELME 250

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRIKV 671
             ++ + ++V D+L LA ++          + +  +L+ ++   Q+++ + HE   ++  
Sbjct: 251 QQASRMRHIVTDLLVLAKLEGESKPPADRAVDMRTVLDHLRDDAQTLSGRHHEITFKV-- 308

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  L +    +  +      +++NA+ ++ +G T+ ++  RD    +FSV ++G  IP
Sbjct: 309 --DETL-AVTGAQTEIFSALGNLVTNAIRYTPEGGTIRVEWRRDGAQAVFSVTDSGLGIP 365

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +  RF  V  +      G GLGL+IV+  +  H   +SI S +   +T   R P
Sbjct: 366 AAELPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDAQLSIQSEEGRGSTFTARFP 425

Query: 790 S 790
           +
Sbjct: 426 A 426


>gi|324328752|gb|ADY24012.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 368

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 127/245 (51%), Gaps = 7/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 124 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 183

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G++KL+   I +++LL ++ + +   + ++++  
Sbjct: 184 IAY--TKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLDEELYPLLEKHHLEA 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DN + +  + N G S
Sbjct: 242 RLNIDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLTGYIDNEEVVVQIMNYGDS 300

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 301 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTMFEVR 359

Query: 788 IPSKE 792
           +P +E
Sbjct: 360 LPKEE 364


>gi|325262477|ref|ZP_08129214.1| sensory box sensor histidine kinase/response regulator [Clostridium
           sp. D5]
 gi|324032309|gb|EGB93587.1| sensory box sensor histidine kinase/response regulator [Clostridium
           sp. D5]
          Length = 1209

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 124/253 (49%), Gaps = 14/253 (5%)

Query: 536 AQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +  L   +VTD VR E+     L     A  +A+  K+ F+  +S+E+R+P+  IIG +
Sbjct: 641 GRVCLARTDVTDVVRKEQQQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMS 700

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +   S +G  + +    +  I  SS  LL+L+NDILD++ +++G M L    I   + +
Sbjct: 701 AIAAQS-IGD-DEQVQDCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIPTEEFI 758

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV-- 708
           N +      +    N+  + I D  L  F + D  +L Q+   ILSNA+ F+S+G  V  
Sbjct: 759 NGINSICYAQAASRNVEYECIVDPVLDDFYIGDAMKLQQVLINILSNAIKFTSEGGRVTF 818

Query: 709 -ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVES 763
            + +  R   D +  F V + G  + E+    +F  F   S        G GLGL+I ++
Sbjct: 819 SVEQRQRTKNDVLMRFIVNDTGVGMSEEFIPHIFEPFSQESTGTTALYGGTGLGLAISKN 878

Query: 764 FINLHGGHVSISS 776
            +++  G +++ S
Sbjct: 879 IVDMMDGRITVRS 891


>gi|291485343|dbj|BAI86418.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 579

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 7/218 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K ++++  FV +VS+EL++P+T+I GFT+ L     G++  K+  S+++  I   S  L
Sbjct: 345 KKLEQMRKDFVANVSHELKTPITSIKGFTETLLD---GAMEDKEALSEFLSIILKESERL 401

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV D+LDL+ ++     L+  T     +L E++  +  K  E  I + +         
Sbjct: 402 QSLVQDLLDLSKIEQQNFTLSIETFEPAKMLVEIETLLKHKADEKGISLHLNVPKDPQYV 461

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+F  +++NA+ ++ +G +V +       D    V ++G  I ++    +F 
Sbjct: 462 SGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEIPRIFE 521

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF  V         G GLGL+IV+  I  H G + ++S
Sbjct: 522 RFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559


>gi|302879057|ref|YP_003847621.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302581846|gb|ADL55857.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 708

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 17/229 (7%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA   A   K+ F+ ++S+E+R+P+  ++G  D+L+ +K   LNS Q + +  I  SS  
Sbjct: 394 EAAHAASRAKSEFLANMSHEIRTPMNGVLGMVDILQETK---LNSMQHRLLGTIQHSSQA 450

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN++NDILD + ++AG + +         +  E+ Q + ++    ++ + V    +L  
Sbjct: 451 LLNILNDILDYSKIEAGRLDIECIATCPRVVAEEIVQLMISQ--AKSVALCVFVSPELPL 508

Query: 680 FVA-DRQRLLQIFSKILSNAMDFSS-------KGSTVILKAARDNG--DFIFSVKNNGSS 729
           ++A D  RL QI   +L NA+ F+S       + S  +     D+G     F + +NG  
Sbjct: 509 WIASDPSRLRQILLNLLGNAIKFTSGVQGRAGQVSLNVRPCELDDGHAGIRFDIADNGIG 568

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I  ++  ++F  F        R+  G GLGLSI      L GG + +SS
Sbjct: 569 IAPEVIDTLFQPFAQADASTARKFGGSGLGLSISRRLAGLMGGEIKLSS 617


>gi|242242957|ref|ZP_04797402.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|242233558|gb|EES35870.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|319401006|gb|EFV89225.1| his Kinase A domain protein [Staphylococcus epidermidis FRI909]
          Length = 565

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 122/221 (55%), Gaps = 13/221 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K + ++  FV +VS+EL++P+T+I GF + L     G+ N +QS   ++  I   S  
Sbjct: 337 LQKLENLRREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNR 393

Query: 620 LLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           + +LV D+LDL+ ++    +++NY    L++L   +  ++ T+    N RIK+ S+ +  
Sbjct: 394 IESLVTDLLDLSHIEQQKELEINYMN--LSELAINIIDNLQTQAQ--NKRIKIQSEIEKD 449

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             + A   ++ Q+ + +LSNA+++SS+ + VI++  R++      +++ G  I E   K 
Sbjct: 450 VIIEAHENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKR 509

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +F RF  V  A      G GLGLSI +  +  H G + + S
Sbjct: 510 IFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKS 550


>gi|254421196|ref|ZP_05034914.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188685|gb|EDX83649.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 858

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 37/239 (15%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K+ F+  VS+ELR+PLT+I     LL  S++    +KQ + +E  S+++  L+ LVN
Sbjct: 601 DSMKDEFIAVVSHELRTPLTSIRAALGLLAQSQIEISPAKQQRMIEIASSNTNRLVRLVN 660

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILD+  +  G + LN     L+ ++ +    +  +   +N  I + +         D  
Sbjct: 661 DILDVERIKLGKIVLNKQICNLSTIITQATDEM--RAMADNRSIHLSASSLSIELWVDPD 718

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------------------------- 718
           +++Q  + +LSNA+ FS   STV + A +   D                           
Sbjct: 719 KIIQTIANLLSNAIKFSPVNSTVEISAQQIRSDDVSRIQKHLSAKGKSAIEAGLEIGESV 778

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +  VK+ G  IP+D  +++F +F        AH+G   G GLGL+I  S +  H G +
Sbjct: 779 LLVMVKDAGRGIPKDKLEAIFEQFEQLNTSDEAHQG---GTGLGLAICRSIVQRHHGEI 834


>gi|254229957|ref|ZP_04923359.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|151937526|gb|EDN56382.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 811

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 11/227 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     L   Q +++  +  S   ++ L+N+I
Sbjct: 358 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LTDDQRKHLRTLYDSGDHMMTLLNEI 413

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G ++   +   +  ++  +K    T   E  +R  V+S    G  +  D+ R
Sbjct: 414 LDYSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLRFGVVSHLPTGRWYNNDKAR 473

Query: 687 LLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           L Q+   +L+NA+ F+ +G   +    K+++     I +VK+ G  I ++  K +F  F 
Sbjct: 474 LRQVLFNLLNNAVKFTDRGIVEVELTEKSSKAGTKLILAVKDTGIGISQEAQKRIFRPFE 533

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  RR  G GLGL+IV+      GGHV + S +   TT    I
Sbjct: 534 QAESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVGTTFTVEI 580


>gi|153005861|ref|YP_001380186.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029434|gb|ABS27202.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 549

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 1/202 (0%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS++LR+PL+ I      L+ S   ++        + I  S+  +  L+ D+LD+A V A
Sbjct: 335 VSHDLRTPLSAIRMGAHRLRASAASAVPEALGAIADVIQRSAGRMERLIGDLLDVAAVQA 394

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G + ++ S     +L+ E  +S+ + +  + + + V +   L   +AD  R+LQ+   ++
Sbjct: 395 GRLTVDPSPRRPGELVREAVESMQSLVRGHGVELDVDAAPDLPLVLADHDRILQVLGNLV 454

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           SNA+  +  G  + ++A        F+V + G  I  D  + +F  +   A      G G
Sbjct: 455 SNAVKVTEAGGRIGVRAEPRAAAVRFAVSDTGPGIAPDELERIFEPYRRGAG-ATYSGTG 513

Query: 756 LGLSIVESFINLHGGHVSISSS 777
           LGL+I    +  HGG + + S+
Sbjct: 514 LGLAIARGIVEAHGGRIGVESA 535


>gi|170720356|ref|YP_001748044.1| GAF sensor signal transduction histidine kinase [Pseudomonas putida
           W619]
 gi|169758359|gb|ACA71675.1| GAF sensor signal transduction histidine kinase [Pseudomonas putida
           W619]
          Length = 405

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 18/244 (7%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERAL E+    R   E++  F+  + ++LR+PL  I    +LL T +L   + K      
Sbjct: 161 ERALREE----RAMAEVREQFIAVLGHDLRNPLFAITAGAELL-TQRLD--DDKNRAIAR 213

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN-----DLLNEVKQSIATKMHENN 666
           +I         LV D+LD A    G      S I LN     DL   +    A   H + 
Sbjct: 214 HIHTCGQRASQLVRDVLDFARGRLG------SGIPLNLQPCPDLSEGLMHVAAELQHVHP 267

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            R  ++    +G    DR+R+ Q+ S +++NA+   +    V ++AA  + +F+ SV NN
Sbjct: 268 RRQILLQVDDIGGLYCDRERVTQLLSNLIANALTHGAPDGPVTVRAAIADEEFVLSVHNN 327

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I       +F  F        R+G+GLGL I       HGG + + S ++  T  + 
Sbjct: 328 GHPIAPQTLNQLFQPFTRPLSAAPRQGLGLGLYIANQIALAHGGRMEVISDEQRGTLFSF 387

Query: 787 RIPS 790
            +P+
Sbjct: 388 HLPA 391


>gi|118474424|ref|YP_892424.1| sensor histidine kinase/response regulator [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413650|gb|ABK82070.1| sensor histidine kinase/response regulator [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 1016

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 131/243 (53%), Gaps = 26/243 (10%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   +T + +A   A+  K++F+ ++S+E+R+PL  IIGFTDLLK S   +L  ++ + 
Sbjct: 368 KALELITTQKQAAIDANRSKSAFLANISHEIRTPLNGIIGFTDLLKNS---NLKKQEKEL 424

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS------IATKMH 663
           V  I  SS  LL ++N+ILD++ +++  ++L+      N++ + +K+        + K +
Sbjct: 425 VGVIEQSSENLLRIINNILDISKIESRKVELD------NEVFSPIKEFSSAVELYSQKAY 478

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD-- 718
           E +I      D  L   +  D  ++ Q+   ++ NA+ F+ +   +I+   +  +N D  
Sbjct: 479 EKDIEFICYIDPSLNKHLEGDYFKVKQVLINLIGNAIKFTPQNGQIIVDITKLDENEDGK 538

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
               FSVK+NG  I ++M + +F+ F+  A++   +   G GLGLSI   +I +    + 
Sbjct: 539 TTIKFSVKDNGIGIDKNMLEKIFDSFIQ-ANKDITKIYGGTGLGLSISNEYIKMMDSIIK 597

Query: 774 ISS 776
           + S
Sbjct: 598 VKS 600


>gi|120556772|ref|YP_961123.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326621|gb|ABM20936.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 1127

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 119/243 (48%), Gaps = 7/243 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R ++AL +  E    A+  K+ ++  +S+ELRSPL  I+G+  L++ 
Sbjct: 642 QTRLLTEEIVAHERTDQALQQAKEQAEAANGAKSRYLTGISHELRSPLNAILGYAQLMEN 701

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               S+   + + +  I  S   L +L+  +LD++ ++AG + L+   + +  L+ ++  
Sbjct: 702 DD--SVPPHRKEALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDQVRIGLLMEQLVT 759

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714
               +  E  +         L   V  D +RL QI   +LSNA+ ++ +GS ++ L+   
Sbjct: 760 MFRLQAEEKGLAFDYHCPHPLPELVTTDEKRLRQILINLLSNAIKYTDQGSVSLTLRYRS 819

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVS 773
              +  F+V++ G  I  +  + +F  F    + GQ R G GLGL+I      + GG +S
Sbjct: 820 QVAE--FTVRDTGEGIAAENIERIFRPFERIRNPGQSRTGTGLGLTITRLLTEIMGGDIS 877

Query: 774 ISS 776
           + S
Sbjct: 878 VES 880


>gi|228996980|ref|ZP_04156613.1| hypothetical protein bmyco0003_15640 [Bacillus mycoides Rock3-17]
 gi|229007888|ref|ZP_04165459.1| hypothetical protein bmyco0002_47560 [Bacillus mycoides Rock1-4]
 gi|228753393|gb|EEM02860.1| hypothetical protein bmyco0002_47560 [Bacillus mycoides Rock1-4]
 gi|228762859|gb|EEM11773.1| hypothetical protein bmyco0003_15640 [Bacillus mycoides Rock3-17]
          Length = 323

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 120/233 (51%), Gaps = 10/233 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E  +K+ E+KN  + ++S++LR+P+T++IG+ DL++ SKL S   +  QYV  + 
Sbjct: 84  LNESIEKEKKSQEMKNEMIHNISHDLRTPVTSLIGYVDLVE-SKLHSNIEECDQYVAVLK 142

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L N ++D+L+   ++   ++L    + +  L+ ++      ++ E  +    I  
Sbjct: 143 RKSYELKNQIDDLLEYCHINYKEIQLYKEIVEVKPLIEQIMIDFVPQLDEEKMHFD-IEC 201

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D + ++++   ++SN++ +   G  ++++   +N +    +KN G  I    
Sbjct: 202 KQTVQIEVDMKLMIRLMQNVISNSILYGKSGKKIVIEMLVENMNVQIKIKNYGQCISSKD 261

Query: 735 CKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
              +F +F       NAH G   G G+GL+I +S   +H G +++ SS++  T
Sbjct: 262 LPYLFEKFYRGEKSRNAHTG---GKGMGLAIAKSIAQIHEGDITVCSSNKETT 311


>gi|218709306|ref|YP_002416927.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio splendidus LGP32]
 gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid
           histidine kinase [Vibrio splendidus LGP32]
          Length = 1223

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 12/216 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+E+R+P+  IIG + L LKT     L   Q  Y+  +  SS  LL L+NDI
Sbjct: 480 KSDFLANMSHEIRTPMNAIIGMSYLALKTD----LTKAQRNYIHKVKLSSDTLLGLINDI 535

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++AG + +      L ++L+ +   +  +  +  + + +  D  + +  + D  R
Sbjct: 536 LDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGDPLR 595

Query: 687 LLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRF 742
           L QI   + +NA+ F+ KG   I +  A   GD I   F+V ++G  + ++    +F +F
Sbjct: 596 LGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSGIGMKQEQASKLFTKF 655

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                   R+  G GLGL+I +    L GG + +S+
Sbjct: 656 TQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVST 691


>gi|160888745|ref|ZP_02069748.1| hypothetical protein BACUNI_01163 [Bacteroides uniformis ATCC 8492]
 gi|156861644|gb|EDO55075.1| hypothetical protein BACUNI_01163 [Bacteroides uniformis ATCC 8492]
          Length = 919

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + +  L +A   K  F  ++S++ R+PLT I    + L  ++  +L+ +  Q +E + 
Sbjct: 400 LEQLSHELEEATHAKLVFFTNISHDFRTPLTLIADPIEQLLANR--TLDGQPRQLLELMK 457

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +  ILL LVN ILD   V+ G M+L+     L D       S    + + +I      S
Sbjct: 458 KNVHILLRLVNQILDFRKVENGRMELHLEPFDLLDSFRGWNDSFRMALLKKHIAFSFEAS 517

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  +AD +++ +I+  + SNA+ ++ +   + ++  +   ++  SV N+GS I   
Sbjct: 518 PDTDFRMMADAEKMERIYFNLFSNAVKYTPENGKITVRLLKSEQNYSLSVFNSGSYISST 577

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             +++F RF      G + G G+GL++V +F+ +HGG+++  S ++G T I
Sbjct: 578 DVEAIFERFYQVD--GHQAGTGIGLALVRAFVEMHGGNITARSDEKGTTFI 626


>gi|153940917|ref|YP_001392697.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152936813|gb|ABS42311.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295320678|gb|ADG01056.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 448

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +    +++  E +  F+ ++S++LR+PLT+I+GF +LLK  K  +   ++  Y+  I
Sbjct: 215 ALNDMGGKIKENKENEKEFLLNISHDLRTPLTSILGFLNLLKQKKYDTEEEREG-YINTI 273

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L  L+++    +T+    +KLN   I L ++L ++      ++ EN I + +  
Sbjct: 274 EEQSLYLKTLIDEFFQFSTLKWKNVKLNKENINLQEILRQINDGFYPQLKENKISMSMNF 333

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG-SSIPE 732
             K      D  + +++   ++SNA+ +S KG+ + L    +    +    N    ++ E
Sbjct: 334 PEKPLYKEVDVDKFMRVLENVISNAIKYSHKGTEISLNLYENKDKIVMEFWNTPIEALKE 393

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           D    +F RF         +G GLGLSI    + LHGG +     +E +  I
Sbjct: 394 DELDFLFKRFYKKDLSRGNKGAGLGLSIALEAVKLHGGELYAVMKNERLGII 445


>gi|163852796|ref|YP_001640839.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163664401|gb|ABY31768.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 1071

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 594 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 651

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     +  +    
Sbjct: 652 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRP 711

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+ +G  V L+        +F++++ G  IPE 
Sbjct: 712 EILPAVVATDEKRLRQILLNLLSNAIKFTPEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 770

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               +F  F   +    R   G GLGL+I      + GG +++ S
Sbjct: 771 DLGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVES 815


>gi|71907451|ref|YP_285038.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847072|gb|AAZ46568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 582

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 18/239 (7%)

Query: 552 ERALTEKNEALRKAD------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           ER  +E+ EALR  +      + K+ F+  +S+E+R+P+  I+G   L+  S+L     +
Sbjct: 179 ERKQSEE-EALRAKEIAEAENQAKSRFLTTMSHEIRTPMNGILGMAQLMLVSRL--TEQE 235

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  +   I  S   LL L+NDILD + ++AG ++L  +      +++E     A      
Sbjct: 236 QHDHARTILNSGQSLLALLNDILDFSKIEAGKLELTPAVFSPRQIVDEAATLFAESAKAK 295

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI 720
            + I+ +  G +   ++AD  RL Q+ + +++N++ F+  G   I    ++   D     
Sbjct: 296 GLVIEAVWHGPIDQRYLADPMRLRQMLANLINNSIKFTGSGFVRIEGREIEPMADASLLE 355

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           FSV ++G  IP +    +F  F S A     R   G GLGLSIV +   L GG   + S
Sbjct: 356 FSVTDSGIGIPPEKLTLLFRPF-SQADSSTTREYGGSGLGLSIVHNLAKLMGGDAGVES 413


>gi|332304964|ref|YP_004432815.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172293|gb|AEE21547.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1058

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A  +K+ F+ ++S+E+R+PL  I+GF+  L+ +   +    Q   +  I+A++  L+ +V
Sbjct: 441 ASNVKSQFLANMSHEIRTPLNAILGFSKELQQADFSADKRDQ---INIINAAADNLMTIV 497

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND+LD++ ++AG +++N     +N+LL E+   +A   H   +      +      + D 
Sbjct: 498 NDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHLKGLEFVYDIEPLPLKLIGDS 557

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVK--NNGSSIPEDMCKSVFN 740
            R+ QI + +L NA+ F+  G   +  + +  ++G F  ++K  + G  I  +  + +F 
Sbjct: 558 YRIRQILNNLLGNALKFTDTGHIGLSASGKLLEHGIFELNIKIEDTGIGISREDKRKLFT 617

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F  V +A     +G GLGL I +  + L  G +S+ SS    +  N  +
Sbjct: 618 AFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLSLQSSPGQGSVFNVTV 667


>gi|255307522|ref|ZP_05351693.1| putative sensor histidine kinase [Clostridium difficile ATCC 43255]
          Length = 912

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 166/368 (45%), Gaps = 25/368 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY---NESDG 496
           ID L +G+ +   D  I  +N +F  +           T+I +I  +  +     N  + 
Sbjct: 525 IDILPDGICLLKEDLSINYANKSFLDML--------AFTNIDDIKDSNIKLLMNANTEEK 576

Query: 497 WDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNA--QTMLTFVNVTDSVRAE 552
                 +    ++ R  L    EL++  D ++E  +  LP A   T    + + D V  +
Sbjct: 577 MKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALPFAIYNTRYIMLIIKDLVHKK 636

Query: 553 RALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKLGSLNSK 605
            +   + E L   K D+IK  F  ++S+EL++PL N+I  ++ L     +  K+   N+ 
Sbjct: 637 YSEQAEKELLERFKTDKIKTEFFANMSHELKTPL-NVISSSNQLVDSFYRNEKIKDYNNN 695

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              +V+ +  SS  L  L+N+I+DL  +++G   L  +   +  ++ ++  +I       
Sbjct: 696 IKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALRK 755

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +I+I   +D +  +   D+  + +I   +LSN + F+  G  + +         I SVK+
Sbjct: 756 DIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDKVIISVKD 815

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D  + +F  F  V         G G+GL+IV++ ++LHGG + + S     T 
Sbjct: 816 TGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKGTE 875

Query: 784 INCRIPSK 791
               +P K
Sbjct: 876 FLISLPMK 883


>gi|139438316|ref|ZP_01771869.1| Hypothetical protein COLAER_00858 [Collinsella aerofaciens ATCC
           25986]
 gi|133776513|gb|EBA40333.1| Hypothetical protein COLAER_00858 [Collinsella aerofaciens ATCC
           25986]
          Length = 412

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +ALR     K+  V +++++LR+PL +++G+  LL+ +    L  +Q  +   ++    
Sbjct: 180 QQALRDESHRKDDLVTYLAHDLRTPLASVVGYLSLLQEAP--ELPVEQRAHFTGVALDKA 237

Query: 619 ILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ L+ +  D+   D   + L    + L  LL +V       ++E +  ++V     L
Sbjct: 238 HRLDALIEEFFDITRFDFHDIVLTRGYVDLGLLLAQVADEFYPILNEQHKEVQVDIREDL 297

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            + + D  ++ ++F+ I+ NA+ +S +GST+ ++A  RD G       N G  IPE   K
Sbjct: 298 -TVLVDGDKMARVFNNIMKNAIAYSYEGSTITIEARRRDGGGVRVRFINQGDPIPEAKLK 356

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            +F +F  +  A    R G GLGL+I +  +  HGG V+  S+ E
Sbjct: 357 VIFEKFYRLDAARATNRGGAGLGLAIAKEIVCAHGGTVACESTPE 401


>gi|255745407|ref|ZP_05419356.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262149050|ref|ZP_06028193.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|262169820|ref|ZP_06037511.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|255737237|gb|EET92633.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262022054|gb|EEY40764.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|262031150|gb|EEY49771.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 734

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 19/244 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 333 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 385

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +K   ++
Sbjct: 386 --TSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSS 443

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714
              E  ++ ++   I+DG+   +  D+ RL QI   +LSNA+ F+  G   I    ++  
Sbjct: 444 LCVEKGLKFQLNSEITDGRW--YYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCD 501

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 502 EENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTV 561

Query: 773 SISS 776
            + S
Sbjct: 562 LVQS 565


>gi|15641833|ref|NP_231465.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147674034|ref|YP_001217367.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|153819807|ref|ZP_01972474.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|227081960|ref|YP_002810511.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229508072|ref|ZP_04397577.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229511689|ref|ZP_04401168.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229518828|ref|ZP_04408271.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229607633|ref|YP_002878281.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254848917|ref|ZP_05238267.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|298498130|ref|ZP_07007937.1| sensor histidine kinase [Vibrio cholerae MAK 757]
 gi|9656358|gb|AAF94979.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126509646|gb|EAZ72240.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|146315917|gb|ABQ20456.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|227009848|gb|ACP06060.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|227013730|gb|ACP09940.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|229343517|gb|EEO08492.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229351654|gb|EEO16595.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229355577|gb|EEO20498.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229370288|gb|ACQ60711.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254844622|gb|EET23036.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|297542463|gb|EFH78513.1| sensor histidine kinase [Vibrio cholerae MAK 757]
          Length = 736

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 19/244 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 335 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 387

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +K   ++
Sbjct: 388 --TSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSS 445

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714
              E  ++ ++   I+DG+   +  D+ RL QI   +LSNA+ F+  G   I    ++  
Sbjct: 446 LCVEKGLKFQLNSEITDGRW--YYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCD 503

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 504 EENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTV 563

Query: 773 SISS 776
            + S
Sbjct: 564 LVQS 567


>gi|89897368|ref|YP_520855.1| hypothetical protein DSY4622 [Desulfitobacterium hafniense Y51]
 gi|89336816|dbj|BAE86411.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 484

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  K EA+ + D ++   +  VS+ELR+PLT I GF++ +    + S   +Q+ Y++ I 
Sbjct: 240 LKAKIEAIERYDRLRQELLSDVSHELRTPLTVIQGFSEAVLDGLVKSKEQEQN-YLKLII 298

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  LV+D+LDL  ++          +VLN L+    +          I +++I  
Sbjct: 299 DETERLRRLVDDLLDLKALEEVETFDEMDYVVLNKLVQISVERFKQLAETREIELEIILP 358

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
               +   +  RL Q+ + ++ NA+  S  G+ V ++   +N     +VK++G  IP+  
Sbjct: 359 EAPVTIWGNSDRLKQVLTNLVDNAIKHSESGTKVGIQLEFENDWAFIAVKDSGPGIPQGE 418

Query: 735 CKSVFNRFVSNAHRGQRRGVG--LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++++ RF        RRG G  LGLSIV+  I +H G V   S     T     +P
Sbjct: 419 LENIWERFYKIDKSRSRRGTGTGLGLSIVKKIIEMHNGKVLARSRIGQGTVFTVYLP 475


>gi|320166903|gb|EFW43802.1| hypothetical protein CAOG_01846 [Capsaspora owczarzaki ATCC 30864]
          Length = 2463

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 126/267 (47%), Gaps = 19/267 (7%)

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            LE    P       +   N+T   + +  L   N  L ++    + F+ H+++ELR+PL 
Sbjct: 1018 LEVDTDPSSPDDICIVLTNITSQKQHDLELERTNATLVQSKHSTSQFMSHMTHELRTPLN 1077

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             +IG  D+L  ++   LN +Q   ++ I  SS ++ +LVN+ILDL+ +D  I+ L    +
Sbjct: 1078 GVIGLVDVLAQTQ---LNEEQRGVLKDIEFSSDLMNSLVNNILDLSRMDNYIIGLEQKPM 1134

Query: 646  VLNDLLNEVKQSIA-TKMHENNIRIKVIS--DGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
             L  L+  +  +I+ +K  ++ + ++++S  D  L   V  D  RL QI + +LSNA  F
Sbjct: 1135 ELRPLIESMCVNISQSKFLKDKLGVELLSFIDPALPRCVLGDPPRLTQILNNLLSNACKF 1194

Query: 702  SSKGSTVI-------LKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            + KG  ++       L+AA +  D       F  ++ G  I +     +F  F      G
Sbjct: 1195 TEKGHVLLSAELLPPLEAADEVPDEKYVRVRFMCEDTGIGIRDQEWHRLFTPFFQVNPNG 1254

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISS 776
               G GLGL I      + GG +   S
Sbjct: 1255 PNGGTGLGLCITAELARIMGGELYFHS 1281


>gi|301168871|emb|CBW28464.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 10810]
          Length = 598

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  VAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    E
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKE 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGIGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLSQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|149276715|ref|ZP_01882858.1| two-component regulatory system histidine kinase [Pedobacter sp.
           BAL39]
 gi|149232384|gb|EDM37760.1| two-component regulatory system histidine kinase [Pedobacter sp.
           BAL39]
          Length = 374

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R  T     L   ++ KN FV  VS+EL++PLT+I+ +  ++ +    + ++  SQ +  
Sbjct: 137 RCFTRDITPLVLEEQRKNDFVSMVSHELKTPLTSILSYVQVMLSRTSKTSDAFISQALSR 196

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  +  ++ND L+++ ++   ++L+ +   LN+LL+EV + I    H ++I+    
Sbjct: 197 TEKQAKSMTRMINDFLNMSRLEQAKVQLDIAPFDLNELLHEVAEEIELTNHTHHIQYA-- 254

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             G++ S  ADR +L Q+   +++NA+ +S + ST+ +   +   D    V++ G  I E
Sbjct: 255 HAGEI-SISADRAKLSQVLDNLINNAIKYSPEHSTITVGFEQVGTDVKIYVRDQGIGISE 313

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS-ISSSDEGVT 782
              K +F RF     +  +   G G+GL +V   +  H   +  +SS  EG T
Sbjct: 314 ADQKRLFERFYRVESKATKHATGFGIGLYLVAEILRYHHSKIEVVSSPGEGST 366


>gi|153800379|ref|ZP_01954965.1| sensor histidine kinase [Vibrio cholerae MZO-3]
 gi|124124005|gb|EAY42748.1| sensor histidine kinase [Vibrio cholerae MZO-3]
          Length = 736

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 19/244 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF   T  + AE+    K +A  KA   K++F+  +S+E+R+P+  ++G   +L   +L 
Sbjct: 335 TFNQKTIYLEAEKV---KAQASTKA---KSAFLATLSHEIRTPMNGVLGTAQILLKDEL- 387

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +K   ++
Sbjct: 388 --TSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSS 445

Query: 661 KMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAAR 714
              E  ++ ++   I+DG+   +  D+ RL QI   +LSNA+ F+  G   I    ++  
Sbjct: 446 LCVEKGLKFQLNSEITDGRW--YYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCD 503

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 504 EENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTV 563

Query: 773 SISS 776
            + S
Sbjct: 564 LVQS 567


>gi|300310697|ref|YP_003774789.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300073482|gb|ADJ62881.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 916

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 135/273 (49%), Gaps = 28/273 (10%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKA----DEI---KNSFVQHVSYELRSPLTNIIG 589
           Q  + ++ V + ++ E+A+  + + LR+A    DE    K+ F+  +S++LR+PLT+I+G
Sbjct: 412 QWTMLYLRVREQLKLEKAVAARTQELRQALQAADEANLAKSGFLTRISHDLRTPLTSILG 471

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F D+++ S         + +   I  S+  +L +VND++D A  D  +     + + L+ 
Sbjct: 472 FADMIQAS-----GGPHAGHGRIIMRSARHMLTMVNDLIDYARGDP-LDTPQPTPLYLHA 525

Query: 650 LLNEVKQS---IATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG 705
           LL E+ Q    +A + H N+  + +  D  L   +A D +RL +I   +L NA  ++ +G
Sbjct: 526 LLQEIAQEGQVLAQRQH-NHFTLDISPD--LPPVLALDARRLHRILGNLLDNAAKYTREG 582

Query: 706 STVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGL 758
              +        A    G     V + G  I       +F  F  ++A R Q  G+G+GL
Sbjct: 583 RIGLHVQWQADHADAGKGALQIEVSDTGCGIAPQFQSRIFEPFERADADRRQ-PGIGMGL 641

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +IV  ++   GG + + S     T ++ ++P++
Sbjct: 642 AIVRLWVQRMGGSIVLESQPGMGTRMHLQLPAE 674


>gi|240140121|ref|YP_002964598.1| putative integral membrane sensor hybrid histidine kinase
           [Methylobacterium extorquens AM1]
 gi|240010095|gb|ACS41321.1| putative integral membrane sensor hybrid histidine kinase
           [Methylobacterium extorquens AM1]
          Length = 1071

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 594 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 651

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     +  +    
Sbjct: 652 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRP 711

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+ +G  V L+        +F++++ G  IPE 
Sbjct: 712 EILPAVVATDEKRLRQILLNLLSNAIKFTPEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 770

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               +F  F   +    R   G GLGL+I      + GG +++ S
Sbjct: 771 DLGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVES 815


>gi|229055103|ref|ZP_04195533.1| hypothetical protein bcere0026_2390 [Bacillus cereus AH603]
 gi|228721251|gb|EEL72777.1| hypothetical protein bcere0026_2390 [Bacillus cereus AH603]
          Length = 484

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  RK ++ KN  + +VS++LR+PLT+I+G+  LL+ SK  +   +  +Y +   A S  
Sbjct: 251 EKERKLEKQKNELITNVSHDLRTPLTSIMGYLRLLRDSKYEN-KEQHDEYTKIAFAKSEQ 309

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLG 678
           L NL+ D+ +   +    + L    + +N+LL+++ + +  +  E+ +  +K   + +  
Sbjct: 310 LKNLIEDLFEYTKLTNEQVVLEKQEVCVNELLDQLIEELVPQAEEHGLSFVKKFPEERAH 369

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           + + D ++++++F  +L NA+ +S     + +   R   D    + N+      +   ++
Sbjct: 370 AMI-DSEKMVRVFDNLLMNAIKYSKDDGEIKVSLQRQRRDIQIVIANHSEEFTREELGNL 428

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF        R   G GLGL+I +S + L GG +     D GV      +P
Sbjct: 429 FERFYKKDQSRSRVTEGSGLGLAIAKSIVELQGGSIRAEYED-GVVQFIVSLP 480


>gi|152997384|ref|YP_001342219.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150838308|gb|ABR72284.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 902

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 121/242 (50%), Gaps = 7/242 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+       L +  EA  +A + K+ F+ ++S+E+R+PL  IIG+  L+  S+   L 
Sbjct: 415 DITEQKYVSMELEQAKEAAEQASQAKSHFLANMSHEIRTPLNAIIGYAQLI--SEDNQLT 472

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                    I+++   LL L+NDILD+A +++G + L+   + L   ++++ +    +  
Sbjct: 473 GVSRTRFLSIASAGHRLLGLINDILDIARIESGRLVLHEQKVNLCREVSQISKLFQGQAQ 532

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF 721
           E  + + V  D     FV  D  +  QI + +L NA+ F+ +G    +++   D      
Sbjct: 533 EKGLELIVECDIDERRFVWIDPVKFQQIITNLLGNAVKFTDQGYVKAVVQIVEDR--IHI 590

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           S+++ G  I  ++   +F  F+         G GLGLS+  + + L  G +S+ SS EGV
Sbjct: 591 SIEDTGPGIEAELMDHLFTPFIQGKAGEASGGTGLGLSLSTTLVKLMNGTLSVKSS-EGV 649

Query: 782 TT 783
            T
Sbjct: 650 GT 651


>gi|222053125|ref|YP_002535487.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221562414|gb|ACM18386.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 751

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 115/228 (50%), Gaps = 2/228 (0%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  F+  VS+EL++PLT++ G   LL  ++   L   + Q +     ++  L+ +++
Sbjct: 520 DRMKTEFISTVSHELKTPLTSMKGSLQLL-LNRGKWLTETERQLLSVCLRNTQRLIRMIS 578

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +ILD++ +++G M   +  + + +L+    + I T  H  +I I       L     D  
Sbjct: 579 EILDISRMESGGMDFTFKPLSMGELVVYAIEEIKTFAHNRSISIVNSLGDHLPLVYGDHD 638

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
           RL+Q+ + +LSNA+ FS +G  V++ A R+    + SV +   +I     + +F +F   
Sbjct: 639 RLIQVLTNLLSNAVKFSPEGKIVMVLAEREGNYLVVSVTDRARAIQWSDREKLFKKFQQL 698

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + +  + G GLGL+I +  I  H G +  ++  EG    +  +P  E
Sbjct: 699 ESDQPMQGGTGLGLAICKEIIEKHHGKIYYNAGKEGGNVFSFTVPIYE 746


>gi|309792276|ref|ZP_07686748.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308225817|gb|EFO79573.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 749

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 111/219 (50%), Gaps = 10/219 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  K +F+  +S+ELR+PLT I G  DLL     G L   Q  ++E I   +  + +L++
Sbjct: 503 DRAKTNFIGTISHELRTPLTVIRGNADLLMRGLAGPLEDDQKVFIESIRQHAGNMTSLIS 562

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKVISDGKLGSFVAD 683
           +++ +A +D+G +  +   + +    ++    +  A K     +RI++  D  L   +AD
Sbjct: 563 NVIMIAGLDSGSLATDIEPLSIFRPADDAAWPLQSAIKAKGLTLRIEIAKD--LPEILAD 620

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             +L  IF +++ NA  ++++G  +I++A       +  V + G  I  DM + +F RF+
Sbjct: 621 FDQLRMIFHQLIDNARRYTAQGE-IIVRAQTLPEYMLVEVADTGRGIAPDMHEQIFERFI 679

Query: 744 -----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                S       RG+GLGL+I +  +   GG + + S+
Sbjct: 680 RGDGASEGINSSERGIGLGLAICKQLVERQGGKIWVEST 718


>gi|301061389|ref|ZP_07202161.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444513|gb|EFK08506.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 595

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 118/235 (50%), Gaps = 6/235 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LRK + I+  FV +VS+E+++P+T I GF + L+   + +  +   +++  I      L 
Sbjct: 358 LRKLENIRRDFVSNVSHEIKTPITAIKGFVETLRDGSVKN-PADAERFLGIIEKHVDRLE 416

Query: 622 NLVNDILDLATVD--AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            ++ D+L+L+ ++  +G   L+     + D+++   Q     + E  I I V S  +  +
Sbjct: 417 AIIEDLLNLSKIEQTSGKEGLSLVESQMVDIIHNALQICHVAIAEREIEIDV-SCAESVT 475

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D   L Q    +L NA+ +S  G T+ +    ++G    +V+++G  I +     +F
Sbjct: 476 LKVDPTLLEQALVNLLDNAVKYSDTGGTIHISVTEESGSITIAVRDHGVGINKKHLPRLF 535

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF  V  A   Q  G GLGL+IV+  +  HGGH+++ S+    +T +  +P  +
Sbjct: 536 ERFYRVDKARSRQLGGTGLGLAIVKHVVQAHGGHITVESTPGEGSTFSIHLPKNQ 590


>gi|295086868|emb|CBK68391.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 772

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 16/248 (6%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----TSKLGS 601
            D +   + + ++NEAL  +   +   V  +++ELR+PLT I G+  L++    T K G+
Sbjct: 280 ADLIERLQQMAKRNEALIAS---RKKAVHTITHELRTPLTAITGYAGLMRKDCNTDKTGT 336

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  Y+  I  SS  +  ++N +L+   +D G  + N+S   ++ + + ++      
Sbjct: 337 -------YIRNIQESSDRMREMLNTLLNFFRLDNGKEQPNFSACRISAITHTLETEFMPI 389

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                + +  I   K      D++R+LQI + +LSNA+ F+  GS V L+A  DNG    
Sbjct: 390 AINKGLTL-TIHCHKDAFVCTDKERILQIGNNLLSNAIKFTENGS-VSLRADYDNGLLKL 447

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G+ + E+  + VF  F   ++   + G GLGLSIV+  + + GG + + S     
Sbjct: 448 IVEDTGTGMTEEEQQRVFGAFERLSNAAAKDGFGLGLSIVQRIVTMLGGTIRLESDKGKG 507

Query: 782 TTINCRIP 789
           +     IP
Sbjct: 508 SRFTVEIP 515


>gi|262403778|ref|ZP_06080336.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
 gi|262350282|gb|EEY99417.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
          Length = 830

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 15/255 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +VT    AE+   +   A R+A+E   ++  F+  +S+ELR+PL  ++G + LLK + L 
Sbjct: 430 DVTSIAEAEK---QSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL- 485

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q ++V  + +S   LL ++NDILD + ++ G  ++  S   LN+L+  + +    
Sbjct: 486 --TDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLNELVYAIDRIYRP 543

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN-- 716
             ++  + + V S+      V +D+ R+ QI   +L+NA+ F+ +GS  V+L+    +  
Sbjct: 544 LCNDKGLELVVDSNITSAVLVRSDQVRINQILFNLLNNAIKFTHQGSIRVVLELIEGDPL 603

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              +  V + G  I E     +F  FV       R   G GLGL+IV S + +  G + +
Sbjct: 604 AQLVIQVVDTGIGIREQDLTVIFEPFVQAESTTTREYGGSGLGLAIVHSLVEMLSGQLHV 663

Query: 775 SSSDEGVTTINCRIP 789
           SS     T    ++P
Sbjct: 664 SSEYGRGTRFEIQLP 678


>gi|229125248|ref|ZP_04254354.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
 gi|228658208|gb|EEL13942.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
          Length = 387

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 5/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+  V++ELR+PLT I G+ D++  +K+ + +  Q  Y+  I   +  +  LV D+ 
Sbjct: 167 RGEFLASVAHELRTPLTYIRGYADIILKTKMSTQD--QKHYLSIIKEEADHVTGLVQDLF 224

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +LA ++     +N     L DLL  +   I     E NI I + S  +    + D QR  
Sbjct: 225 ELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHI-IFSCPEDLVLLLDEQRFE 283

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   +L+NA   S   S + +            VK+ G  IPE     +F RF  V  +
Sbjct: 284 QVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDEGEGIPEKDLPHIFERFYRVDKS 343

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 G GLGL+IV+  I LH G +S+ S
Sbjct: 344 RTRATGGSGLGLAIVKEIIELHRGSISVKS 373


>gi|227112764|ref|ZP_03826420.1| aerobic respiration control sensor protein ArcB [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 789

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 34/247 (13%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   L+ +Q +Y
Sbjct: 264 RDITERKRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLDTQ---LDPEQQKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV----------LNDLLNEVKQSIA 659
           ++ I  S+  L N+ ND++++   +   ++L+   I           L  LL E K    
Sbjct: 321 LKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLENLGGLLAEPKGLKL 380

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAAR 714
                  +  KVI+DG          RL QI   +LSNA+ F+ KG       ++++   
Sbjct: 381 IMDQHQPLPQKVITDGT---------RLRQILWNLLSNAVKFTPKGENGKKGEIVVRVWH 431

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGG 770
           + GD + F V+++G  IP D  + +F  +  V + H G+   G G+GL++ +      GG
Sbjct: 432 EKGDRLRFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGTGIGLAVSKRLAQNMGG 491

Query: 771 HVSISSS 777
            + +SS+
Sbjct: 492 DIQVSST 498


>gi|298530225|ref|ZP_07017627.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509599|gb|EFI33503.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 850

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 40/322 (12%)

Query: 491 YNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTML-------- 540
           Y     +D F A+I   D +  +K + G L    +  +EY  +   N +T+         
Sbjct: 373 YELPQNYDSFLAVIHPADKDEVKKQMDGFLRQSENFSIEYRAVS-KNGETLWILTRGKVV 431

Query: 541 -------------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                        T V++T+    E+ L++  ++   A+  K+ F++++++ELR+PL  I
Sbjct: 432 QSDEQGRPLRMAGTNVDMTERKLMEQELSQAKKSAETANRAKDRFLENMNHELRTPLNGI 491

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +     L  S+   L   + +YVE    SS+ LL  +N IL+L+++   I +++    VL
Sbjct: 492 MSVLQTLADSE---LKPAEKEYVEMALNSSSQLLASLNKILELSSLQDDIQQVHPQPFVL 548

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++ ++++      +     I +++ I +      V+D   L QI   ++ NA+ F+ +G 
Sbjct: 549 HEEMSKLVSFFQPQARNKQIGLELDIQEDVPSWLVSDVGMLRQIVWNLVDNAVKFTHEGK 608

Query: 707 TV--ILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---RRGV 754
            V  I K +    D        +F V++ G  IP +M K +F  FV   H  Q    +G 
Sbjct: 609 VVLRISKQSDSRQDSEATTVPLLFEVEDTGGGIPHEMQKDIFEPFVIGEHDIQFKRYQGT 668

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           G+GLS+    +   GG   + S
Sbjct: 669 GIGLSVCRQLVRSLGGETGVES 690


>gi|160941292|ref|ZP_02088629.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435853|gb|EDP13620.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
           BAA-613]
          Length = 805

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 112/216 (51%), Gaps = 11/216 (5%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+++R+P+  IIG T+L +   +G    KQ  Y+  I++S   LL L+N+ILD
Sbjct: 414 SDFLSRMSHDIRTPMNAIIGMTELAQL-HIGD-EEKQRDYLNKIASSGAHLLGLINEILD 471

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           ++ +++G+M+L+ S + L  L  E  + +   M  +    +V  D     +V  D +R+ 
Sbjct: 472 VSKIESGVMELSESPLNLRALAGEAAEMVRISMENSQQEFQVDIDESFDPWVMGDARRIR 531

Query: 689 QIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           Q+   IL NA  ++ +   +        K  +  G + F +++ G  +  +  + +F  F
Sbjct: 532 QVLVNILENASKYTGQRGKITFSVCEFKKEEQRTGTYRFIIEDTGIGMKPEYMEHIFEPF 591

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               ++   +  G GLG++IV++ I++  G + + S
Sbjct: 592 SRADDSRTSKVPGTGLGMTIVKNLISMMDGDIRVES 627


>gi|126700109|ref|YP_001089006.1| putative sensor histidine kinase [Clostridium difficile 630]
 gi|255101653|ref|ZP_05330630.1| putative sensor histidine kinase [Clostridium difficile QCD-63q42]
 gi|115251546|emb|CAJ69379.1| Two-component sensor histidine kinase,sporulation-associated spo0A
           [Clostridium difficile]
          Length = 912

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 166/368 (45%), Gaps = 25/368 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY---NESDG 496
           ID L +G+ +   D  I  +N +F  +           T+I +I  +  +     N  + 
Sbjct: 525 IDILPDGICLLKEDLSINYANKSFLDML--------AFTNIDDIKDSNIKLLMNANTEEK 576

Query: 497 WDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNA--QTMLTFVNVTDSVRAE 552
                 +    ++ R  L    EL++  D ++E  +  LP A   T    + + D V  +
Sbjct: 577 MKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALPFAIYNTRYIMLIIKDLVHKK 636

Query: 553 RALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKLGSLNSK 605
            +   + E L   K D+IK  F  ++S+EL++PL N+I  ++ L     +  K+   N+ 
Sbjct: 637 YSEQAEKELLERFKTDKIKTEFFANMSHELKTPL-NVISSSNQLVDSFYRNEKIKDYNNN 695

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              +V+ +  SS  L  L+N+I+DL  +++G   L  +   +  ++ ++  +I       
Sbjct: 696 IKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALRK 755

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +I+I   +D +  +   D+  + +I   +LSN + F+  G  + +         I SVK+
Sbjct: 756 DIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDKVIISVKD 815

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D  + +F  F  V         G G+GL+IV++ ++LHGG + + S     T 
Sbjct: 816 TGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKGTE 875

Query: 784 INCRIPSK 791
               +P K
Sbjct: 876 FLISLPMK 883


>gi|82502199|gb|ABB80127.1| SubS [Bacillus subtilis]
          Length = 347

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 117/229 (51%), Gaps = 2/229 (0%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K++  +   + ++S+++R+PLT+IIG+ D LK     S   KQ +Y+  +S  S  L  L
Sbjct: 112 KSEAARKRLLSNISHDIRTPLTSIIGYVDALKDGVASSEEEKQ-EYLNILSKKSNSLKQL 170

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +++I ++A +DA  ++L      L ++  E       ++ +++I + V    K  S +AD
Sbjct: 171 IDEIFNMAKLDANEVQLKTEFFDLAEVARETLIDFLPELKKHDIDLNVQIPEKKCSVIAD 230

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR-F 742
           R  L+++   I+ N + +  +G  + ++      ++   + + G  IPE+  ++VF+R +
Sbjct: 231 RLSLIRVIENIVRNGIHYGKEGKVLGIELTESEHEYQLLIWDQGPGIPENDIENVFDRMY 290

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +  R    G GLGL+I +S +  + G +   S     TT    +P +
Sbjct: 291 RRDRSRSLDDGSGLGLAIAKSLVEKNRGRIWAQSVPWEKTTFGFSLPKQ 339


>gi|28210523|ref|NP_781467.1| sensory transduction protein kinase [Clostridium tetani E88]
 gi|28202960|gb|AAO35404.1| sensory transduction protein kinase [Clostridium tetani E88]
          Length = 521

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 127/235 (54%), Gaps = 14/235 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ E  R+ ++ K+  + +VS++LR+PLT+I+G+ +L+K  K     S + + +E+I 
Sbjct: 283 LNKRIEKEREIEKTKSELITNVSHDLRTPLTSILGYLNLIKDGKY----SGEEEMLEFIQ 338

Query: 615 AS---STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK- 670
            +   S  L  L++++ +   + +  +K++   I L++L+ ++ +       EN I IK 
Sbjct: 339 IAYNKSEKLRVLIDELFEYTRLSSDGIKISKVEIALDELIEQLVEEFIPVFLENKIEIKR 398

Query: 671 -VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + S+ K+    AD  +L+++F  +  NA+ +S K   + +    + G   FS+ N G S
Sbjct: 399 NIESNIKID---ADGDKLVRVFENLFMNAVRYSYKPGLIKINLINEYGYAKFSITNKGKS 455

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + +D    +F+RF  V  +      G GLGL+I +S ++LH G +  S   E +T
Sbjct: 456 LRKDEVDKLFDRFYRVEKSRSETTGGTGLGLAISKSIVSLHHGEIWGSCQGEEIT 510


>gi|323693564|ref|ZP_08107767.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323502372|gb|EGB18231.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 814

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 21/255 (8%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFT 591
           ++   +VT   R ++ LTE+ EAL+       +A+  K  F+  +S+E+R+P+  IIG T
Sbjct: 261 LIDITDVTQLRRMQKKLTEQTEALKDALAVAERANHAKTDFLSRMSHEIRTPMNAIIGMT 320

Query: 592 DLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               T     +  +Q  +  +E I  SS  L++L+NDILD++ +DAG MK+ +    L  
Sbjct: 321 ----TIAGAYIEDRQRVAGCLEKIGYSSKHLMSLINDILDMSKIDAGKMKIAHEAFDLKT 376

Query: 650 LLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +   +   I  +  E  +   V + +      + D  RL QI   +LSN++ F+ KG T+
Sbjct: 377 VAESITSIIYPQAVEKGLLFTVPLIELTETVMIGDAMRLNQILLNLLSNSLKFTPKGGTI 436

Query: 709 IL-----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQR-RGVGLGLSIV 761
            L     +  R      F+V + G  +  +  K +F  F   +   GQ+  G GLG++I 
Sbjct: 437 RLEIRQIQRKRSRVRLGFTVCDTGYGMSREFMKRLFTPFEQESVAAGQKFGGTGLGMAIT 496

Query: 762 ESFINLHGGHVSISS 776
            + + L GG +S+ S
Sbjct: 497 RNLVMLMGGTISVKS 511


>gi|312962748|ref|ZP_07777237.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
 gi|311283123|gb|EFQ61715.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
          Length = 1206

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 9/230 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA   A+E K+ F+  +S+E+R+P++ +IG  ++L+          ++  V ++S
Sbjct: 704 LLQAKEAADDANESKSIFLASMSHEIRTPISALIGLIEMLRVRGGSPEQIDENLRVAHLS 763

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A S  LL+L+ DILDL+ ++AG M  +     L  LL  V +          +   +  D
Sbjct: 764 AQS--LLSLIGDILDLSKIEAGAMVPSPRPTDLAQLLESVHKLFEVNAQNKGLTFDLQID 821

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN-----GDFIFSVKNNGS 728
                 + D   L QI + ++SNA+ F+ +G   + LK   D+     G ++  V+++G 
Sbjct: 822 AMASLVLIDSLMLNQIIANLISNAIKFTQQGFVKLSLKQLPDDHESGFGRYLIEVQDSGL 881

Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + E   K++F  FV  + +    R  GLGLSI      L G  +SI+S+
Sbjct: 882 GLNEQQKKAIFEPFVQVSPNTTGERSTGLGLSICTRLATLLGARLSINST 931


>gi|229087950|ref|ZP_04220060.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
 gi|228695363|gb|EEL48238.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
          Length = 609

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D  +  FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ L
Sbjct: 375 RIDRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNIA-PQFLTVTQEETERMIRL 433

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           VN +L L+ +D+   +L    +   D  N V         +N I  +  S  K   F+  
Sbjct: 434 VNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVIFKRSFS--KKSRFIDM 491

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           D  ++ Q+   I+SNA+ +S +G TV  +  RD  D +  SV + G  IP++  + +F R
Sbjct: 492 DGDKITQVLYNIISNALKYSPEGGTVTYR-LRDREDMLEISVSDQGMGIPKENVEKIFER 550

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A   Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 551 FYRVDKARSRQMGGTGLGLAIAKEMIVAHGGSIWAKSEEGKGTTIYFTLP 600


>gi|254442243|ref|ZP_05055719.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256551|gb|EDY80859.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 564

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++K+S V  V++EL++P+++I    D L+  S+ G ++ K+  YV  I+  +  L  L++
Sbjct: 339 QLKDSLVATVTHELKTPVSSIRLLVDTLQDESRKGKVDEKE--YVALIARENQRLGRLID 396

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           + L  + ++ G+       I    ++   +++   +    N  ++V  +  +     D  
Sbjct: 397 NFLSFSRMERGMGSFAMEAISAASVVGAAEEAFRDRFQGQNFELEVCVEEGIAEISGDGD 456

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
            L  +   +L NA  +  KG  ++L+A  ++   +F V++ G  I +   + +F +F   
Sbjct: 457 ALATVLGNLLENAFKYGGKGRRIVLRAKGESTGALFEVEDYGMGIAKKEQRKIFRKFYQV 516

Query: 745 NAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ RG   G VGLGLSIVE  ++ H G + I S     +    RIP
Sbjct: 517 SSGRGSHAGSVGLGLSIVEFIVSKHSGRIDIESELGRGSIFKVRIP 562


>gi|149377908|ref|ZP_01895636.1| Putative diguanylate cyclase (GGDEF domain) with GAF sensor domain
           [Marinobacter algicola DG893]
 gi|149357798|gb|EDM46292.1| Putative diguanylate cyclase (GGDEF domain) with GAF sensor domain
           [Marinobacter algicola DG893]
          Length = 815

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L E     RK D +KN F+  VS+ELR+PLT+I G   L+     G+L  +    V   
Sbjct: 571 SLVEDISERRKVDRMKNEFISTVSHELRTPLTSISGSLGLIAGGVFGALPDEVKTMVAIA 630

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + +S  L +L++D+LD+  + +G M+L   +  ++ ++ +    ++T   +  I +++ +
Sbjct: 631 ARNSDQLRHLIDDLLDMEKLVSGKMELRMQSENISAIIQDSLDRVSTYAVDRQISLRLEN 690

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                    D +RL Q    +LSNA+ FS + + V++     NG F   V + G+ IPE 
Sbjct: 691 QHPWAKAFIDARRLGQALDNLLSNAIKFSPQEAEVVIFTHLHNGLFRIEVTDYGTGIPEA 750

Query: 734 MCKSVFNRFV 743
               +F +F 
Sbjct: 751 FQPRIFEKFA 760


>gi|148550792|ref|YP_001260231.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingomonas wittichii RW1]
 gi|148503211|gb|ABQ71464.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingomonas wittichii RW1]
          Length = 377

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 29/245 (11%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL------LKTSKLGSLNSKQS 607
           AL E    L+ AD  KN F+  +++ELR+P+  +     L      L+T+ +  +  + S
Sbjct: 141 ALEELTGVLQTADRRKNEFLAVLAHELRNPIMAMGAGLHLMERRPDLETATM--VRGQMS 198

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMH 663
           +YV ++        +LV D+LD+A +D G + L    ++L DLL+      +  I    H
Sbjct: 199 KYVRHLG-------SLVEDLLDIARIDQGKIALKKERLLLQDLLSFAVEGSRHHIDAASH 251

Query: 664 E--NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           E   ++  K I         AD  RL Q+   +L+NA  ++  G  + L A R+      
Sbjct: 252 ELIQHVAPKPIW------LEADHARLAQVVGNLLTNAAKYTPAGGEIRLSARREEDQVRI 305

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL--GLSIVESFINLHGGHVSISSSDE 779
            V + G  IP +M   +F+ F       QR   GL  GL++V+  + LHGG +++  S  
Sbjct: 306 EVADTGVGIPAEMQARIFDLFAQIDGSNQRTQEGLGIGLALVKQLVELHGGTIALKRSAP 365

Query: 780 GVTTI 784
           G  ++
Sbjct: 366 GEGSV 370


>gi|87307413|ref|ZP_01089558.1| probable sensor/response regulator hybrid [Blastopirellula marina
           DSM 3645]
 gi|87290153|gb|EAQ82042.1| probable sensor/response regulator hybrid [Blastopirellula marina
           DSM 3645]
          Length = 672

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K  F+ ++S+E+R+P+T I+G+ +LL   +    + ++  +++ I  +   L+ ++NDI
Sbjct: 286 VKTEFLANMSHEIRTPMTAILGYAELLAQQET---DLEKLHFLKVIRQNGEFLVEIINDI 342

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           LDL+ ++AG + +    + L+ ++ E++  +  +  EN+I   V     +   + +D +R
Sbjct: 343 LDLSKIEAGKLDITLEPLELSRMIEEIQSLMLVRAAENDIEFNVDFAATVPERIRSDSKR 402

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L QI   ++ NA+ F+ +GS V L  + D     F V + G  + +   + +F  F    
Sbjct: 403 LRQILINLIGNAVKFTQEGS-VRLVVSPDAERIQFDVIDTGIGMTQQQVEQLFLPFQQAD 461

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               R+  G GLGL+I +    + GG +++ S     +     IP+
Sbjct: 462 SSVSRKFGGSGLGLAISQRLAVMLGGEITVQSQQGQGSVFTLSIPN 507


>gi|312127465|ref|YP_003992339.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777484|gb|ADQ06970.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 575

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 10/233 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L+K + I++ FV +VS+EL++PLT+I GF + LK    G+++ K    +++  I      
Sbjct: 339 LKKLERIRSDFVANVSHELKTPLTSIKGFVETLKD---GAIDDKDVAIKFLNIIEVEVER 395

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ L+ND+L L+ ++   M +    +V+ +++ E+ + +  K  + NI++ V     L  
Sbjct: 396 LVRLINDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDVKVQEGLEM 455

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +  R  L QIF  ++ NA+ ++ +   V +   + N   +  V + G  IP+   + +F
Sbjct: 456 NIY-RDWLKQIFINLIDNAIVYNKENGKVWVTVEKSNSIVVIKVTDTGIGIPKKEIERIF 514

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF     +G+ R   G GLGLSIV+  + L+GG V + S +   +     IP
Sbjct: 515 ERF-YRVDKGRSRKLGGTGLGLSIVKHIVKLYGGKVWVESQEGIGSEFTVTIP 566


>gi|295084438|emb|CBK65961.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 610

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 133/250 (53%), Gaps = 11/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++     
Sbjct: 365 DITELKRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTESA--- 421

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++  Y   I  ++ +LLNL+ND++DL+ +++G ++L    + L +LL+E   S+A   H
Sbjct: 422 AEKELYNSLIGHNNKLLLNLINDVIDLSKIESGYLELRPDWVNLTELLDE---SVAEYAH 478

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++++++      +   D+ R+ QI S  LSNA+  ++ G   +     D+     
Sbjct: 479 QVPSGVELLTNYPAHDSLVELDKLRIKQILSNFLSNALKNTTTGHVEVFYEV-DHQSVRI 537

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  IP++M + +F RF       Q  G GLGL I +  +    G + + S     
Sbjct: 538 GVKDTGRGIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIG 595

Query: 782 TTINCRIPSK 791
           TT    +P +
Sbjct: 596 TTFIIELPCR 605


>gi|220905766|ref|YP_002481077.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7425]
 gi|219862377|gb|ACL42716.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7425]
          Length = 706

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 120/240 (50%), Gaps = 10/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K + L + + +K+ F+  VS+ELR+P+ NI     +LK   +     KQ +Y+  ++
Sbjct: 465 LQQKMQELERLNALKDDFLSTVSHELRTPMANIKMAIHMLKQFPMAD---KQERYLNILA 521

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              +    L+ND+LDL  ++AG   +   +I L++ L  V +   T+  ++   +++   
Sbjct: 522 NECSRETELINDLLDLQRLEAGTNPIGLESINLSEWLPIVLEPFQTRTQQHKQHMRIHRP 581

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSSIP 731
            +L    ++R  L ++  ++L+NA  ++  G  +   +   +    +  F V N  S IP
Sbjct: 582 VELPCLRSNRHALERVLVELLNNACKYTPAGGELHFGVDLPSPSPSNLCFRVTNQ-SEIP 640

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F +F  V NA   ++ G GLGL++V+  +    G + + S + G TT   ++P
Sbjct: 641 SSELPRIFEKFYRVPNADPWKQGGTGLGLALVKKLVEQLQGEIYVHSHN-GQTTFTVQLP 699


>gi|115372064|ref|ZP_01459376.1| cyanobacterial phytochrome A [Stigmatella aurantiaca DW4/3-1]
 gi|115371029|gb|EAU69952.1| cyanobacterial phytochrome A [Stigmatella aurantiaca DW4/3-1]
          Length = 865

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 144/350 (41%), Gaps = 23/350 (6%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           QG T D          P GRI  S    R  W   + R SPG  I  ++    +      
Sbjct: 519 QGPTQDEPPPLALGVSPIGRIAQS----RKPWVVHDVRHSPGPEIAELSLPEEKVS---- 570

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
               FA       ++   L G L L S       I+ +  A   +    V +  RAE AL
Sbjct: 571 ----FAGYPLVLGEQ---LIGVLALASTQPFSRDIVDVLAAAAEIITQGV-ERRRAEEAL 622

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               + L +++E    F    S++L+ PL  +  +T LL     G L++   +++ Y   
Sbjct: 623 RLHAQELARSNEELQQFAYVASHDLQEPLRMVASYTQLLGRRYRGKLDADADEFIRYAVD 682

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               +  L+ D+L  + V  G    +         L   ++++   + E    ++V  +G
Sbjct: 683 GVNRMQRLIQDLLAYSRV--GTRGRDLKPCESLKPLERAQENLRAMLQETGGAVEV--EG 738

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPED 733
            L + +AD  +L+Q+F  ++ NA+ F       ++  A   G   + F+VK+NG  I   
Sbjct: 739 TLPTVLADESQLVQLFQNLVGNALKFHGPVPPRVVVRAESQGAEGWRFTVKDNGLGIDPQ 798

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
             + +F  F     R +  G G+GL+I +  +  HGG + + S   EG T
Sbjct: 799 YFERIFVIFQRLHGREEYPGTGIGLAICKKIVERHGGRIGVESQPGEGST 848


>gi|53711747|ref|YP_097739.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52214612|dbj|BAD47205.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 671

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 124/248 (50%), Gaps = 17/248 (6%)

Query: 549 VRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++  + L E  E LRKA E       +K +F+Q +S+E+R+PL +I+GF+ +L       
Sbjct: 421 IQQNKELVENGEELRKAKEQAENASRMKTTFIQSMSHEIRTPLNSIVGFSQVLSNYFKEE 480

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIAT 660
            N +  ++   I  SS+ LL L+ND+LD++ +D   I+  +    + N  L  ++++  +
Sbjct: 481 DNDEIREFASIIEISSSNLLRLINDVLDISYLDQSEILPYDKPEDINNCCLLSIERTRNS 540

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF 719
              E ++R +  S G L   + + +R+ QI + +L NA+ F+ KG+ T+    +      
Sbjct: 541 IKKEVSLRFEP-SCGPL-MILTNPERVAQILTHLLHNAIKFTDKGNITLAYTISPTEKQI 598

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +++V + G  IP +  + VF RF       Q  G GLGL I        GG + I  +  
Sbjct: 599 VYTVTDTGKGIPVEQQEYVFERFAKLNDFSQ--GTGLGLPICRIIAEKLGGSLIIDKT-- 654

Query: 780 GVTTINCR 787
              T  CR
Sbjct: 655 --YTKGCR 660


>gi|332163059|ref|YP_004299636.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667289|gb|ADZ43933.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 794

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 121/233 (51%), Gaps = 14/233 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +S+Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DSEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           K I + +L      + D  RL QI   ++ NA+ F+ +G  V+      N   IF V+++
Sbjct: 379 KFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQGEIVVRVRRESNDRLIFEVEDS 438

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
           G  IPED    +F  +  V +++ G+   G G+GL++ +      GG +++ S
Sbjct: 439 GMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKS 491


>gi|300866839|ref|ZP_07111516.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335149|emb|CBN56676.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1317

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 135/273 (49%), Gaps = 29/273 (10%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +++D  R E  L +  EA   A+  K++F+ ++S+ELR+PL  I+GFT ++  ++  +L 
Sbjct: 803  DISDRKRREIELWQAMEAAESANLAKSTFLANMSHELRTPLNAILGFTQVM--ARNPALT 860

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +  + ++ I  S   LL+L+NDILDL+ ++AG   L  +   L  LL+ ++  +A +++
Sbjct: 861  PELKEDLQTIGRSGDYLLSLINDILDLSKIEAGHSTLEETGFDLIALLHSLQNMLAERVN 920

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----- 717
               +++       L  F+ AD Q+L Q+   +LSN++ F+  G   +   + ++      
Sbjct: 921  SKKLQLYFDVAPNLPQFILADSQKLRQVLLNLLSNSLKFTDLGYITLRVRSEESSLTVRG 980

Query: 718  --------------------DFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGL 756
                                  +F V + G  I      ++F+ FV + A +  + G GL
Sbjct: 981  LEAPEISNLDPTISNVTPKTSLLFEVTDTGVGISPQELDNIFDAFVQTQAGKRAKNGTGL 1040

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GL+I    I + GG + ++S+    +T    +P
Sbjct: 1041 GLTISRKLIEIMGGEIFVNSTPGQGSTFTFTVP 1073


>gi|325679756|ref|ZP_08159330.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324108571|gb|EGC02813.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 508

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 120/238 (50%), Gaps = 3/238 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +    +RK ++++   + +VS++LR+PLT +  + ++++    G    K++++++ 
Sbjct: 253 KVLNDAKNEIRKVNDLRRDLIGNVSHDLRTPLTMVKAYAEMIRDLS-GDNPVKRAEHIQV 311

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L NLVN++L+L+ +++G M+LN     + D LN+        + +N   +K  
Sbjct: 312 IIDEADRLSNLVNNLLELSKLESGNMELNLKKFSIVDKLNDCMTRYQLVIEQNGYDMKFE 371

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D       AD  +L Q+    ++NA++++ +   + +K           V++NG  I +
Sbjct: 372 PDDD-REVTADPDKLDQVIYNFINNAINYTGEHKVIRIKQINTEKAVRIEVEDNGKGIAK 430

Query: 733 DMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D+   VF+R+  +A  +    G GLGL+I +  +  H     + S +   +T    IP
Sbjct: 431 DLLPKVFDRYYRDAKVKRDVVGTGLGLAICKEILKCHDFPFGVRSEEGKGSTFWFEIP 488


>gi|238797459|ref|ZP_04640958.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969]
 gi|238718730|gb|EEQ10547.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969]
          Length = 1001

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 127/253 (50%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 488 VLVDVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 547

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 548 ---QGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHISANYLP 604

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    +  +    + D  RL Q+ S +L+NA+ F+  G  ++    R  GD+
Sbjct: 605 LVVKKRLGLYCFIEPNVPRVMMGDSVRLQQVISNLLNNAIKFTDTGCIIL--QVRVRGDY 662

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           + F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S
Sbjct: 663 LEFRVRDTGVGINSREINQLFDPFFQIGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVIS 722

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 723 ELGMGSIFAIRIP 735


>gi|220928357|ref|YP_002505266.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219998685|gb|ACL75286.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 447

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 117/218 (53%), Gaps = 6/218 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL   ++ KN F+ ++S+++R+PLT I+G+ +++K     S  + Q  Y+  +      
Sbjct: 211 EALENEEQKKNEFLTNISHDIRTPLTTILGYLNMIKNKNYDSEEALQG-YIRIMERKGKF 269

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +++ D    + + +  + + Y+ + LN+LL ++K+    +     +++++    ++  
Sbjct: 270 LASMLEDFFQYSKLASHDISIKYTKLDLNELLRQMKEDEEEEFLAKELKLELQLYPEVIY 329

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKN-NGSSIPEDM 734
            + D + L ++   +LSN++ +S   ++V++K++ +  ++I    FS+ N    SI E+ 
Sbjct: 330 CMGDPELLARVVGNLLSNSIKYSQMNTSVLMKSSIEKVNYINYGVFSISNVPQESISEEE 389

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +F R     +  +  G GLGLSI  + I LHGG +
Sbjct: 390 VSRLFERLYKRDNARKEEGSGLGLSIANNIIKLHGGKI 427


>gi|291535461|emb|CBL08573.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 478

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L   +E +  FV +VS++ RSPLT+I G+ + +    +      Q +Y+  I   +  L 
Sbjct: 242 LNTLEEDQRKFVSNVSHDFRSPLTSIKGYVEAMLDGTIPV--EMQDKYLNIILFETERLN 299

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L   +L+L    +  + L+ ++  +N  +    Q+      E +I   +I  G+     
Sbjct: 300 KLTKSLLELNKFGSHGVMLDITSFDINHTIRMTVQTFEGTCMEKHISFNLILSGETLFVS 359

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  ++ Q+   ++ NA+ FS   S + ++    N     SVK+ G  IP+D  K +++R
Sbjct: 360 ADFSKIQQVLYNLIDNALKFSHANSAITIETTEKNEKVFVSVKDTGIGIPKDSIKKIWDR 419

Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  ++  RG+ ++G GLGLSIV+  I  HG +++  S+ EGV T
Sbjct: 420 FYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENINCIST-EGVGT 462


>gi|261211606|ref|ZP_05925893.1| signal transduction histidine kinase [Vibrio sp. RC341]
 gi|260838956|gb|EEX65588.1| signal transduction histidine kinase [Vibrio sp. RC341]
          Length = 569

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 134/272 (49%), Gaps = 21/272 (7%)

Query: 525 VLEYSIIPLPNAQTMLTFVNV-TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +LE +I  + + + ++  V + T  +R  +   E+      A++ K++F+  +S+ELR+P
Sbjct: 171 LLERAISDIEHKEELIKLVEIRTRELRLAQKFAEQ------ANQSKSNFLAMMSHELRTP 224

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  ++G  D+L+    G   S Q++ +E +  S+ +LL ++ND+LDL+ +++G   L+  
Sbjct: 225 LNAVLGLIDVLR----GDSTSYQAELLEQMENSAELLLIIINDVLDLSRIESGHFSLHCH 280

Query: 644 TIVLNDLLNEVKQSIATK---MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
            +   DL  ++ QS+        E  I   V +   +   +  D  RL QI   I+ NA+
Sbjct: 281 WV---DLKKKLDQSLVYHRQIAQEKGIAFNVQTHINERLEYYTDSARLTQILFNIVGNAI 337

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G  V +          F VK+ G  I ++    +F  F+   +   R   G GLG
Sbjct: 338 KFTKSGQ-VDIDLIYGTHQVTFRVKDTGIGIEKNRIDRLFTPFIQADNSITRNYGGTGLG 396

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  I L GG + + S  E  TT   ++P
Sbjct: 397 LAITKHLIELMGGSIQVESELEVGTTFILQVP 428


>gi|260684073|ref|YP_003215358.1| putative sensor histidine kinase [Clostridium difficile CD196]
 gi|260687732|ref|YP_003218866.1| putative sensor histidine kinase [Clostridium difficile R20291]
 gi|260210236|emb|CBA64481.1| putative sensor histidine kinase [Clostridium difficile CD196]
 gi|260213749|emb|CBE05667.1| putative sensor histidine kinase [Clostridium difficile R20291]
          Length = 895

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 166/368 (45%), Gaps = 25/368 (6%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY---NESDG 496
           ID L +G+ +   D  I  +N +F  +           T+I +I  +  +     N  + 
Sbjct: 508 IDILPDGICLLKEDLSINYANKSFLDML--------AFTNIDDIKDSNIKLLMNANTEEK 559

Query: 497 WDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNA--QTMLTFVNVTDSVRAE 552
                 +    ++ R  L    EL++  D ++E  +  LP A   T    + + D V  +
Sbjct: 560 MKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALPFAIYNTRYIMLIIKDLVHKK 619

Query: 553 RALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLL-----KTSKLGSLNSK 605
            +   + E L   K D+IK  F  ++S+EL++PL N+I  ++ L     +  K+   N+ 
Sbjct: 620 YSEQAEKELLERFKTDKIKTEFFANMSHELKTPL-NVISSSNQLVDSFYRNEKIKDYNNN 678

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              +V+ +  SS  L  L+N+I+DL  +++G   L  +   +  ++ ++  +I       
Sbjct: 679 IKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKYNIVSVIEDLFMNIEEYALRK 738

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +I+I   +D +  +   D+  + +I   +LSN + F+  G  + +         I SVK+
Sbjct: 739 DIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNGGWIYVSIHYKIDKVIISVKD 798

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D  + +F  F  V         G G+GL+IV++ ++LHGG + + S     T 
Sbjct: 799 TGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVKNLVSLHGGDIEVVSEVNKGTE 858

Query: 784 INCRIPSK 791
               +P K
Sbjct: 859 FLISLPMK 866


>gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2]
 gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2]
          Length = 941

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 123/233 (52%), Gaps = 11/233 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++A+   +EA + A + K+ F+ ++S+E+R+P+  ++G  ++       +L  +Q   +E
Sbjct: 258 DKAIVLADEA-QAASKAKSQFLANMSHEIRTPMNGVLGMAEMALDM---NLTLEQQNAIE 313

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S   LL ++NDILD + ++AG +++      L  L+ E+ Q +A + H   + + V
Sbjct: 314 TIKSSGESLLTIINDILDFSKIEAGKLEIETINFNLPALIEEIAQILAHRAHAKGLELIV 373

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNN 726
            I++       +D  R+ Q+ + +LSNA+ F+ +G   + +++ +D GD     F V++ 
Sbjct: 374 DIAETLHPDMSSDPSRIRQVLTNLLSNAIKFTEQGEVYLKVESLKDMGDSEQVRFLVRDT 433

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           G  +  +  K +F  F        R+  G GLGL+I    + L  G ++ + +
Sbjct: 434 GIGMTAEERKKLFQPFSQADESTTRKYGGTGLGLAISRQLVELMDGQINCTGN 486


>gi|168178541|ref|ZP_02613205.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|226948394|ref|YP_002803485.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|182670789|gb|EDT82763.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|226843323|gb|ACO85989.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 477

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 127/231 (54%), Gaps = 16/231 (6%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ----SQYVEYISASSTILLNLVNDI 627
           F  ++S++L++P+  I     ++      +LN+K+     +Y+  I  +   LL LVN+I
Sbjct: 222 FYANISHDLKTPINIIYSAIQVMNM----ALNNKKIDTIEKYIGVIKQNCYRLLRLVNNI 277

Query: 628 LDLATVDAGI--MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++   +++G   +KLN + IV   L+ ++  S++T +  N++ I   +D +      D+ 
Sbjct: 278 VNTNKIESGCCKIKLNNNNIV--SLVEDIVTSVSTYVENNDMDIIFDTDTEEKIIACDKD 335

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVS 744
            + ++   ++SN++ +   G   I    +D  D  I SVK+NG  IPE++ K+VFNRFV 
Sbjct: 336 MIERVVLNLISNSVKYKQSGKGSIQVTVQDKEDRVIVSVKDNGIGIPENIQKNVFNRFVQ 395

Query: 745 NAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  +         G+GL++V+S I++H G++ I+S +   T I   +PS++
Sbjct: 396 SNRKEYDLTTCSSGIGLALVKSIIDMHDGNIQINSRENKGTEIIFELPSRK 446


>gi|119489748|ref|ZP_01622506.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454322|gb|EAW35472.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1012

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 20/244 (8%)

Query: 550 RAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           RA  AL E+ E L +A       D++K+ F+ + S+ELR+PL  IIG  + L     G L
Sbjct: 332 RATIALREREEDLERANTDLKHLDQLKDEFLANTSHELRTPLNGIIGIAESLIDGATGQL 391

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI---VLNDLLNEVKQSIA 659
           +      +  I +S   L +LVND+LD + +    + L    +    + DL+  + Q + 
Sbjct: 392 SDLTQSNLAMIVSSGRRLSSLVNDVLDFSKIRYSNIDLQLKPVDLYTITDLVITLSQPLV 451

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--- 716
            K    N+++    + +  +  AD  RL QI   ++ NA+ F++ G   IL    DN   
Sbjct: 452 GK---KNLQLINSINPESPAVQADENRLQQILHNLVGNAIKFTAAGQVEILAKKVDNLES 508

Query: 717 -GDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
             +F+   + + G  I ED  + +F  F   +    R   G GLGL+I +  + L GG +
Sbjct: 509 DQEFLKIVIADTGIGISEDKFEQIFESFEQASGTTAREYGGTGLGLAITKQLVELQGGKI 568

Query: 773 SISS 776
            + S
Sbjct: 569 EVFS 572


>gi|115377600|ref|ZP_01464797.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820429|ref|YP_003952787.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365401|gb|EAU64439.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393501|gb|ADO70960.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1020

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 11/230 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AER   ++ EAL + D  K +F  +VS+E R+PLT +IG T+    S   +L   +   +
Sbjct: 334 AER---KRAEALAEIDRAKTAFFSNVSHEFRTPLTLMIGPTEDALASPERALRGSE---L 387

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  +   LL LVN +LD + ++AG ++  Y+ + L+ L  E+  +  + +    +R++
Sbjct: 388 ERVYRNEVRLLRLVNTLLDFSRIEAGRVQATYAPVDLSRLTGELASTFRSAVERAGLRLR 447

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
           +           D     +I   +LSNA+ F+ +G   ++   R  G  +  ++++ G+ 
Sbjct: 448 LELPPLPERIYVDHDMWEKIVLNLLSNALKFTFEGEIAVV--LRWLGTHVELTIQDTGTG 505

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           IP      +F+RF  V  A      G G+GLS+V+  +  HGG +   S+
Sbjct: 506 IPAGELPRIFDRFHRVQGARSRTHEGSGIGLSLVQELVKFHGGTIRAEST 555



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER + E+   L +++    SF   VS++LR+PL +I+GF  LL+ S  G L+ K   ++ 
Sbjct: 770 ERRVRERTAQLEESNRELESFSYSVSHDLRAPLRHILGFAGLLEKSSRGKLDEKSQSHLR 829

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ ++     LV+D+L  + +  G  ++    + L  L+ EV+  + T+     +   V
Sbjct: 830 VIAEAAQKGGQLVDDLLAFSRL--GRAEVKKRPVELRKLVEEVRAELVTEAEGRKVSWHV 887

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDN-GDFIFSVKNNGSS 729
                L    AD   L  +   +LSNA+ ++  +    I  + R N G     +K+NG  
Sbjct: 888 ---APLPQVQADPSLLRLVLKNLLSNALKYTRPRAEAAIDVSTRQNDGAVEVCIKDNGVG 944

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                   +F  F       Q  G G+GL+ V   I  HGG V
Sbjct: 945 FEMQYVGKLFGVFQRLHTPEQFEGTGIGLANVRRIILRHGGRV 987


>gi|167644961|ref|YP_001682624.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347391|gb|ABZ70126.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 832

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 8/238 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    ER L E       A  +K  F+ ++S+ELR+PLT+++GF  L+       L+
Sbjct: 435 DITEHKAMERQLREARNEAEAAAAVKGEFLANMSHELRTPLTSVLGFARLVDNEP--DLS 492

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               +++  + +    LL  +NDILD + ++AG ++L         L++E     + +  
Sbjct: 493 PDARRFISRVLSGGKALLTTINDILDFSKLEAGQLELKLEPTAPAQLIDEAMDLFSLETE 552

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-F 721
              + ++ +    L +  + D  RL Q+   ++ NA+ F+  G+  +  A    G+ +  
Sbjct: 553 ARGVALRAVGLEDLPADLLIDGGRLRQVLLNLIGNAVKFTEVGTITVSAAYEPAGERLSL 612

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           SV + G  I       +F RF S    G  R   G GLGL+I +  +   GG + ++S
Sbjct: 613 SVADTGPGIAPGDVDLLFRRF-SQVDAGLTRKHGGTGLGLAICKGLVEAMGGQIGVTS 669


>gi|55981692|ref|YP_144989.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55773105|dbj|BAD71546.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 373

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL K ++ +   +  V++ELR+PL  + G+ + L     G L+ +++   E I      
Sbjct: 138 EALEKVEKTRAELIGTVAHELRTPLAALQGYAEGLID---GVLSKEKA--AEGILREVKA 192

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+  ++ V+A  +++    +    LL E      +      + + + +   L  
Sbjct: 193 MRRLVEDLSLVSRVEAKAVEIRPRPLDPKGLLEEALARFQSAFQAKGVALSLEAQDPLPQ 252

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +R+LQ+ + +L+NA+  + +G  V L+A R      F V + G  IPE+    +F
Sbjct: 253 VWADEERVLQVLANLLTNALRHTPQGGEVRLRAFRQGEAVAFQVADTGPGIPEEHLPHIF 312

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A   +  G G+GL++ +  +   GG + + S     TT    +P
Sbjct: 313 ERFYRVDKARSRKEGGSGVGLTVAKGLVEAMGGRIFVESRVGEGTTFTFTLP 364


>gi|229113506|ref|ZP_04242955.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
 gi|228669924|gb|EEL25318.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
          Length = 387

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 5/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+  V++ELR+PLT I G+ D++  +K+ + +  Q  Y+  I   +  +  LV D+ 
Sbjct: 167 RGEFLASVAHELRTPLTYIRGYADIILKTKMSTQD--QKHYLSIIKEEADHVTGLVQDLF 224

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +LA ++     +N     L DLL  +   I     E NI I + S  +    + D QR  
Sbjct: 225 ELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHI-IFSCPEDLVLLLDEQRFE 283

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   +L+NA   S   S + +            VK+ G  IPE     +F RF  V  +
Sbjct: 284 QVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDEGEGIPEKDLPHIFERFYRVDKS 343

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 G GLGL+IV+  I LH G +S+ S
Sbjct: 344 RTRATGGSGLGLAIVKEIIELHRGSISVKS 373


>gi|210634442|ref|ZP_03298109.1| hypothetical protein COLSTE_02031 [Collinsella stercoris DSM 13279]
 gi|210158819|gb|EEA89790.1| hypothetical protein COLSTE_02031 [Collinsella stercoris DSM 13279]
          Length = 233

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 126/232 (54%), Gaps = 7/232 (3%)

Query: 548 SVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           ++ +++A  E+ EA  L K ++++ + ++ + ++LR+PLT I G   +L+ S      +K
Sbjct: 4   ALESDQAAREREEAAVLAKNEQLRANLLRSLGHDLRTPLTAISGSAAVLRESGDQLPPAK 63

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +  + I   S  L++ V ++L +  V+ G + LN +T ++++++      +A + H +
Sbjct: 64  RRELADAIYDDSLWLIDTVENLLAITRVEDGDLHLNLTTELMDEVIAGAVAHVAREAHGH 123

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           ++ ++   D  L     D   ++Q+ + ++ NA  ++ +GSTV + A RD    +  V +
Sbjct: 124 HLVVEHTDDILLARI--DVHLIMQVLTNLIVNAFKYTPEGSTVTVGARRDGAFVVVEVAD 181

Query: 726 NGSSIPEDMCKSVFNR-FVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
           +G  + +     VF+R F+++ +R     R  GLGLS+  + +  HGG + +
Sbjct: 182 DGPGVADCDKPHVFDRFFIADRNRPVDSHRSFGLGLSLCRAIVEAHGGIIEV 233


>gi|220908400|ref|YP_002483711.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865011|gb|ACL45350.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 500

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 131/269 (48%), Gaps = 9/269 (3%)

Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYEL 580
           L++SI PL N++    L      D  + +RA  E   +L K  E+   KN F+  +S+E 
Sbjct: 230 LDFSIKPLKNSKGDINLLIAEGRDISKLKRAEAEIRRSLEKEQELSQMKNKFISMISHEF 289

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           RSP+  I    DLL+ ++L     ++ ++ + + +S    L L++++L L     G ++L
Sbjct: 290 RSPMAIISSAIDLLEDNELS--EDEKIKFYQKMRSSIDQTLQLIDEVLLLGRA-TGRVEL 346

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            +S + L    +E+ +++       + +I  + +G  G    D   L QI   +LSNA+ 
Sbjct: 347 EHSPLDLEKYCSEIVETLQLTTGREH-QIIYVCEGTSGQVGMDSFLLKQIIDNLLSNAIK 405

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           +S K   +    +  +   IF +++ G  IPE     +F  F    +  + +G GLGL+I
Sbjct: 406 YSPKSGMIRFTLSLQSNQAIFCIQDWGIGIPEQDQAKLFTAFKRAGNVYKIQGTGLGLAI 465

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
           V+  ++L  G + + S +   TT    +P
Sbjct: 466 VKQCVDLLHGKIEVESQEGCGTTFTVTLP 494


>gi|193077064|gb|ABO11821.2| putative two-component sensor kinase [Acinetobacter baumannii ATCC
           17978]
          Length = 1154

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 135/261 (51%), Gaps = 8/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +       + L +   A  +A++ K+ +V  +S+ELR+PL +I+G++ LL+ 
Sbjct: 652 QTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 711

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L+ +    +  IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q
Sbjct: 712 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 769

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  + N++        L  +V  D++RL Q+   +L NA+ F++ G T+ LK    
Sbjct: 770 MFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 828

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I E   + +FN F   SN  +G   G GLGL IV+  ++L GG +S
Sbjct: 829 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLS 888

Query: 774 ISSS-DEGVT-TINCRIPSKE 792
           ++S  ++G    I   +PSKE
Sbjct: 889 VTSQLNQGSQFKIKFYLPSKE 909


>gi|297807097|ref|XP_002871432.1| hypothetical protein ARALYDRAFT_909023 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317269|gb|EFH47691.1| hypothetical protein ARALYDRAFT_909023 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 846

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 122/239 (51%), Gaps = 35/239 (14%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+RSPL+ ++G  ++L T+KL   + +Q Q +  + +S  ++L L+NDILD++ V++
Sbjct: 353 MSHEIRSPLSGVVGMAEILSTTKL---DKEQRQLLNVMISSGDLVLQLINDILDISKVES 409

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G+MKL  +     +++  V Q+ A  + ++      I+D      V D  R+ QI + ++
Sbjct: 410 GVMKLEATKFRPREVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGDVLRIRQILTNLI 469

Query: 696 SNAMDFSSKGSTVI-------LKAARD---NGD---------------FIFSVKNNGSSI 730
           SNA+ F+ +G+  I          ARD   N D                   V + G  I
Sbjct: 470 SNAIKFTHEGNVGIKLQVISEPSFARDNALNADTEEHEQNGLTETSVWICCDVWDTGIGI 529

Query: 731 PEDMCKS----VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
           P    K+    +F +++  S  H  +  G GLGL+I +  + L GG ++++S  +EG T
Sbjct: 530 PGKQAKNAIPCLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVNEGST 588


>gi|283779193|ref|YP_003369948.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437646|gb|ADB16088.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 827

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 124/246 (50%), Gaps = 21/246 (8%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+VT+  ++ER L     A   A+  K+ F+ ++S+ELR+P+T I+GF D++  +     
Sbjct: 415 VDVTEWKQSERELKLAKIAAEAANHAKSEFLANMSHELRTPMTAILGFVDIVAENV---- 470

Query: 603 NSKQSQYVEYISASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               S   + I A++TI      L+ L+NDILDL+ ++AG +++   +  +  L  +V Q
Sbjct: 471 ----SSNPQLIDAAATIKRNGEHLMGLLNDILDLSKIEAGRLEVQKHSCNVRALTADVIQ 526

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  +     + + +   G +   +  D  RL QI   ++ NA+ F+  G   IL     
Sbjct: 527 LMRVRSDAKGLELSIEFQGAIPETIETDSTRLRQILINLIGNAIKFTENGRVQILVRLER 586

Query: 716 NGDFI--FSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            G  +  F +++ G  I PE M K +F  F        R+  G GLGL+I +    + GG
Sbjct: 587 RGTPMLEFEIRDTGIGITPEQMTK-LFRPFTQVDTSLTRKFGGTGLGLTISKRLAEILGG 645

Query: 771 HVSISS 776
            +++SS
Sbjct: 646 TITVSS 651


>gi|119896994|ref|YP_932207.1| sensory histidine kinase CreC [Azoarcus sp. BH72]
 gi|119669407|emb|CAL93320.1| catabolite repression sensor kinase for PhoB [Azoarcus sp. BH72]
          Length = 476

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 6/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL E    L     +++ +VQ +++EL+SPLT + G  +LL  +        ++++V +
Sbjct: 243 RALAEMRARLDGKQYVEH-YVQSLAHELKSPLTAVRGAAELLAEAPSAD---DRARFVGH 298

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  +++ +L LA V+        + I L +L  EV  S   ++    +++ + 
Sbjct: 299 IGEQAERMQLIIDRLLALARVEQLQAPEALAEIALGELAAEVVASRQPQLAARGLQVDIG 358

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +G+      DR  L Q  + ++ NA+DFS  G+ + L    D    + +V+++G   PE
Sbjct: 359 GEGER-RVRGDRFLLQQALANLVDNAIDFSPPGARIGLTLGGDASHHVITVRDHGPGAPE 417

Query: 733 DMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F RF S       R+  GLGL+ V     +HGG    +++ EG       +P
Sbjct: 418 FALPQLFERFYSLPRPATGRKSTGLGLAFVREVARVHGGDADFANAPEGGAQARIVLP 475


>gi|119486213|ref|ZP_01620273.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119456704|gb|EAW37833.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 659

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 154/323 (47%), Gaps = 37/323 (11%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSII----PLPNAQTMLTFVNVTD--SVRAE 552
           L AA I +     + L   LE L D  L  + +    P+P    +  F+ +    S+  E
Sbjct: 328 LIAASIIAALYLSRDLARPLERLRDYALTINSLESPRPIPQNLKIREFIQLGQAISIMVE 387

Query: 553 R------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R      AL    +  + A+++K+ F++ +S+ELR+PL  II     L+   L     ++
Sbjct: 388 RLQSRASALELATKEAQIANQLKDEFLRIISHELRTPLNGIINSLQFLR-DDLCDTPKEE 446

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK---MH 663
            +Y++  + S+  L ++VNDILD+A +  G + +    +   DL+  ++++IAT+   +H
Sbjct: 447 QEYLDMANKSALHLYSIVNDILDIALIQEGQLSITQKPV---DLVKIIREAIATQSLEVH 503

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------------- 709
           +  + +K+     +  + AD  +L Q+   ILSNA+ F+ KG  +I              
Sbjct: 504 QKGLSLKLHLQDPIKVW-ADPDKLKQVLLNILSNAVKFTKKGRIIITAEVLPIVQCDRIS 562

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
            ++  +    +  V++ G  I  +    +F  F  V  +   +  G+GLGLSI +S + +
Sbjct: 563 YESCEEKFQAVIVVQDTGIGIAVEKQDKLFQPFAVVDGSTTREFGGIGLGLSISQSLMTM 622

Query: 768 HGGHVSISSSDEGV-TTINCRIP 789
            GG + + S  E   TT+   IP
Sbjct: 623 MGGSIELYSKGENQGTTVTLCIP 645


>gi|60679980|ref|YP_210124.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491414|emb|CAH06163.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 671

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 124/248 (50%), Gaps = 17/248 (6%)

Query: 549 VRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++  + L E  E LRKA E       +K +F+Q +S+E+R+PL +I+GF+ +L       
Sbjct: 421 IQQNKELVENGEELRKAKEQAENASRMKTTFIQSMSHEIRTPLNSIVGFSQVLSNYFKEE 480

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIAT 660
            N +  ++   I  SS+ LL L+ND+LD++ +D   I+  +    + N  L  ++++  +
Sbjct: 481 DNDEIREFASIIEISSSNLLRLINDVLDISYLDQSEILPYDKPEDINNCCLLSIERTRNS 540

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF 719
              E ++R +  S G L   + + +R+ QI + +L NA+ F+ KG+ T+    +      
Sbjct: 541 IKKEVSLRFEP-SCGPL-MILTNPERVAQILTHLLHNAIKFTDKGNITLAYTISPTEKQI 598

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +++V + G  IP +  + VF RF       Q  G GLGL I        GG + I  +  
Sbjct: 599 VYTVTDTGKGIPVEQQEYVFERFAKLNDFSQ--GTGLGLPICRIIAEKLGGSLIIDKT-- 654

Query: 780 GVTTINCR 787
              T  CR
Sbjct: 655 --YTKGCR 660


>gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 998

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 9/242 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+    E AL +      +A  +K+ F+ ++S+E+R+P+  IIG T LL       L
Sbjct: 475 VDLTERKHIEEALKKAKREAEEAARVKSDFLANMSHEIRTPMNAIIGMTSLLLEE---PL 531

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q   +E I  +   LL ++NDILD + ++     L      +   + +    +    
Sbjct: 532 TPEQRDCIEVIETNGDALLTVINDILDFSKMENNKTVLEECQFAIAQCVEDSLDLVGINA 591

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI 720
               + +    D  +    V D  +L Q+   +LSNA+ F+ KG  V+  +A++ +GD +
Sbjct: 592 ANKGLNLAYSIDKSVPEMIVGDPSKLKQVLGNLLSNAVKFTDKGEVVVTVSAQEVDGDNV 651

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  IP++  K +F  F        R   G GLGL+I +  + +  G +   S
Sbjct: 652 IQFEVRDTGIGIPQNRMKLLFLPFSQMEPSTSRLYGGTGLGLAISKRLVEMMKGRIWAES 711

Query: 777 SD 778
           S+
Sbjct: 712 SE 713


>gi|327190925|gb|EGE57979.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 1127

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 7/250 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    +    + + AL    E    A+  K+ +V  +S+ELR+PL  ++G+  +L+ 
Sbjct: 645 QNTLLLKEIAAHKKTDAALQNAKETAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILER 704

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               ++ + +   ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L+++ +
Sbjct: 705 DD--TIPAPRQSSIKVIRRSAEHLSGLIDGLLDISKIEAGRLQVYSNEINIQDFLDQIVE 762

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     +         L  FV  D +RL QI   +LSNA+ F+ +GS V       
Sbjct: 763 MFRPQAQAKGLAFAHQRSPALPQFVRTDEKRLRQILVNLLSNAIKFTDEGS-VTFDVGYR 821

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           +    F+V + G  I E     ++  F        R   G+GLGL+I     N  GG +S
Sbjct: 822 SQVATFTVADTGRGITEKDLPRIYEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEIS 881

Query: 774 ISS-SDEGVT 782
           +SS  DEG T
Sbjct: 882 VSSVRDEGST 891


>gi|288957487|ref|YP_003447828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288909795|dbj|BAI71284.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1064

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 10/218 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+  +S+E+R+P+  I G  +LL+ +   SL   Q + V  +  S+  LL ++N
Sbjct: 365 NQAKSLFLATMSHEIRTPMNGIQGMLELLEHT---SLTGDQRELVSVVRESAGALLTIIN 421

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DILD + ++AG + L    + L +++  V  ++A       + +    D  L + V  D 
Sbjct: 422 DILDFSKIEAGRLDLERVPVALANVVEGVADTLAPSARAKGLSLVTYIDPDLPAEVLGDP 481

Query: 685 QRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFN 740
            R+ Q+   I  NA+ F+  GS TV ++ A  +GD +    +V + G  I ++    +F 
Sbjct: 482 VRIRQVLFNIAGNAVKFTQSGSVTVRVELAHFDGDRVTIRVAVIDTGIGIAKEDQSRLFR 541

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            F        RR  G GLGLSI      L GG V ++S
Sbjct: 542 PFTQAEVSTTRRFGGTGLGLSICRRLAELMGGDVGVTS 579


>gi|255010645|ref|ZP_05282771.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313148457|ref|ZP_07810650.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137224|gb|EFR54584.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 587

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 9/214 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  + GF+ +L    +   N  + Q  + I  +S +LL L+ND++
Sbjct: 361 KSLFLSNMSHEIRTPLNALSGFSSILTEESID--NDTRRQCNDIIQQNSELLLKLINDVI 418

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--KMHENNIRIKVISDGKLGSFVADRQR 686
           DL+++D G +  N+      D +N  +  I T  K+ +    +  ++     +   D  R
Sbjct: 419 DLSSLDPGKLTFNFKEC---DAVNTCRNVIDTVEKVKQTQAGVSFVTSLDKLTLRTDESR 475

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   +L NA  F+++G+  +          +F+V + G  IP +    +FNRF    
Sbjct: 476 LQQVLINLLINATKFTTEGNITLTLEKESETMALFTVTDTGCGIPPEKQNQIFNRFEKLN 535

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              Q  G GLGLSI +  I   GG + I     G
Sbjct: 536 EGAQ--GTGLGLSICQLIIEQIGGKIWIDPEYTG 567


>gi|256829197|ref|YP_003157925.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578373|gb|ACU89509.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 918

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 124/248 (50%), Gaps = 12/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E+ L    E    A+  K+ F+ ++S+E+R+PL  I+G   LL+TS     +
Sbjct: 520 DITERKREEKELLLAKEHAEAANRAKSEFLANMSHEIRTPLNGILGMLQLLETS---VQD 576

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ Q+      S+  L +L++DILDL+ V+A +M +      L+  L +          
Sbjct: 577 KEELQFCALAIQSTNRLTSLLSDILDLSRVEASMMLIRSERFNLHSALTQTIDLFGPVAV 636

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNG 717
           +  + +    D  L  + V D  RL Q+ + ++ N+  F+ +G     +  +   + D  
Sbjct: 637 QTGVTLTAHLDPGLPIWVVGDSIRLQQVLTNLIGNSFKFTKRGHVHVEAYPLPSRSIDTL 696

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F++++ G  I E    ++F  F  VS  +    +G GLGL+I +  + L GG++++ 
Sbjct: 697 RVFFAIEDTGCGIAEKDIGNLFQPFTQVSQGYNRNHQGAGLGLTISKQLVALMGGNMAV- 755

Query: 776 SSDEGVTT 783
            S+EGV T
Sbjct: 756 ESEEGVGT 763


>gi|329298208|ref|ZP_08255544.1| aerobic respiration control sensor protein ArcB [Plautia stali
           symbiont]
          Length = 781

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 118/232 (50%), Gaps = 10/232 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  +    LN +Q +Y
Sbjct: 268 RDITERKRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLDT---DLNQEQLKY 324

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ ND++++  ++   ++L+   +     L +++           ++ 
Sbjct: 325 LKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPLDFTGFLADLENLSGLLAQPKGLKF 384

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +  +  L   + AD  RL QI   ++ NA+ F+ +G  V+  A   +    F V+++G 
Sbjct: 385 VMAPELPLPHKISADGTRLRQILWNLIGNAVKFTRQGEIVVRVAYHQDETLHFEVQDSGM 444

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
            IP++    +F  +  V + H G+   G G+GL++        GG +++SS+
Sbjct: 445 GIPQEEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQAMGGDITVSSA 496


>gi|332159934|ref|YP_004296511.1| Multi-sensor hybrid histidine kinase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664164|gb|ADZ40808.1| Multi-sensor hybrid histidine kinase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 926

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 118/238 (49%), Gaps = 9/238 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +   A  +A+  K+  +  +S+E+R+PL   +G  +LL+ + L     +Q Q  E  
Sbjct: 383 ALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGAVELLQNTPLA---PEQYQLAETA 439

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671
              S  LL ++N++LD + +++G + L+     L  LL++   +I +++    I +   V
Sbjct: 440 RQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQAMLTIHSQVLNKPIALSTYV 499

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            SD  L     D QR+ QI   +L NA+ F+ +G  + L   R      F+V++ G  I 
Sbjct: 500 SSDVPL-EIELDSQRIKQILVNLLGNAVKFTRQGH-ISLTVERKGQQLCFTVEDTGCGID 557

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + +F  F+       R+G GLGL+I ++   + GG++++ S     +  +  +P
Sbjct: 558 SQHQEKIFRPFIQT--YDHRQGTGLGLTIADNLAKMMGGNITLYSKPNCGSHFSLTLP 613


>gi|295096581|emb|CBK85671.1| Osmosensitive K+ channel histidine kinase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 895

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 7/261 (2%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  S     ALT   E  R A E   I+NS +  +S++LR+PLT + 
Sbjct: 624 IPEQQRLLETFTLLVASALERLALTASEEQARLASERESIRNSLLAALSHDLRTPLTVLF 683

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G +++L T  L +  SK +     I         LVN++LD+A + +G   L    + L 
Sbjct: 684 GQSEIL-TLDLAAEGSKHAMQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLE 742

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    + +   +   +I + +     L     D     ++   +L NA  ++   + +
Sbjct: 743 EVVGSALKMLEPGLGGRHIELDMPE--PLTLIHVDGPLFERVLINLLENAAKYAGTKARL 800

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            + A  D       V +NG  IP    +++F +F          GVGLGL+I ++ +++H
Sbjct: 801 GIAARVDKRVLRLDVWDNGPGIPAGQERAIFEKFARGNKESAIPGVGLGLAICQAIVDVH 860

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +S  +  EG       +P
Sbjct: 861 GGTISAENRPEGGARFCVTLP 881


>gi|260775399|ref|ZP_05884296.1| aerobic respiration control sensor protein ArcB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608580|gb|EEX34745.1| aerobic respiration control sensor protein ArcB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 779

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 127/250 (50%), Gaps = 17/250 (6%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E+L+KA   K +F+  +S+ELR+PL  I+G + +L  ++   +  +Q  +
Sbjct: 264 RDITERKRHEESLKKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ---MTDEQRNH 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ S+  L N+ NDI+D+   D   ++L  S++   + + E++   A    +  +R 
Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELFPSSLNFEEFVAEMESISALMASQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKN 725
            +     L + +  D  RL Q+   ++SNAM F+ +G  V+   A  + ++      +++
Sbjct: 381 DLERLSDLPTAIDVDATRLRQVLWNLISNAMKFTKEGGVVMTVEAEVDEEYANITMEIED 440

Query: 726 NGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +G  IPE     +F  +    S        G G+GL++ +  I +  G +++ SS+EG  
Sbjct: 441 SGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLIKMMDGDITV-SSEEGFG 499

Query: 783 ---TINCRIP 789
              T+   +P
Sbjct: 500 STFTVTIHVP 509


>gi|291295488|ref|YP_003506886.1| histidine kinase [Meiothermus ruber DSM 1279]
 gi|290470447|gb|ADD27866.1| histidine kinase [Meiothermus ruber DSM 1279]
          Length = 473

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 15/215 (6%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTIL 620
           L  A E +  F+   S+ELR+P+T I+G  + LL+ +++     +Q + +E I   S  +
Sbjct: 243 LESAWETQGRFLADASHELRTPVTAILGHVNYLLRRTQI---TEQQRESLEIIKRESERM 299

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+L+L+    G  K+   ++ L  +LNE+++   +K  E  I ++      +   
Sbjct: 300 QKLVGDLLELSKT-GGSWKIELGSVHLKTVLNEIEEEY-SKSFEGQIEVQAPEHVWV--- 354

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVF 739
           + D +RL Q+ + ++SNA+     G+T I   A D  +  +  V++NG  I ++    +F
Sbjct: 355 LGDPERLHQVMANLVSNAIK---AGATRIRLIALDLAERVVIRVEDNGEGISKEHLPHLF 411

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            RF  V  A    R G GLGL+IV S +  HGGHV
Sbjct: 412 ERFYRVDKARDRARGGSGLGLAIVRSIVEAHGGHV 446


>gi|226225795|ref|YP_002759901.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
 gi|226088986|dbj|BAH37431.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
          Length = 423

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 9/225 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  + AD  K S +  +S+ELR+PLT + G+ +LL+   LG L+ +Q   +  +      
Sbjct: 184 EDAQSADAAKTSLLATLSHELRTPLTALEGYGELLEDEILGPLSHEQRDVITRLRTVGRH 243

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+ DIL  A+++A  +    S + L++LL+ +   +     E  I   +  +G L  
Sbjct: 244 LGSLIEDILTYASLEADRLTARPSAVRLDELLDSLHPFLEPLAREKGIDFVIDPEGGLPG 303

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNG-DFIFSVKNNGSSIPED 733
              D  ++ QI   +  NA+ F+  GS V L+ +R     D G    F+VK+ G  I   
Sbjct: 304 MHTDEAKVRQILLNLCQNAIKFTESGS-VTLRVSRGSPMPDGGVSLRFAVKDTGIGIATA 362

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             + +F  F  + +    +R G GLGL I      L GG + + S
Sbjct: 363 DLQRLFRPFSQLEDVPTRRRGGTGLGLYIARRLATLLGGRIEVVS 407


>gi|297582942|ref|YP_003698722.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141399|gb|ADH98156.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 807

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 116/233 (49%), Gaps = 9/233 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K   V  V++ELR+PL++I+GFT+ +    +     ++  Y+E I + S  L  L
Sbjct: 580 EVDRLKTELVSTVNHELRTPLSSIMGFTERMLNKDVSE--ERRRVYLETILSESERLSQL 637

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VN+ LDL  +++   +++   + ++D L +   +     H     I  ++D K+    A 
Sbjct: 638 VNNFLDLQKIESLPDEMDLEPVKISDSLRQAMSAFHPSEHHELKVIDSLTDTKVNGHSAS 697

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNR 741
              L Q+F  +LSNA  +S +G T+ ++   D+   + +  + + G  I +     +F +
Sbjct: 698 ---LHQVFLNLLSNAQKYSPEGGTITVETELDDAKKNVLIHISDEGIGIAKKDHDRLFMK 754

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F  + + H G  +G GLGL++ +  +   GG + + S     +T    IP KE
Sbjct: 755 FSRIKDQHGGTIKGTGLGLALSKELMEAQGGDIRVRSEAGEGSTFTVVIPLKE 807


>gi|37525371|ref|NP_928715.1| sensor protein KdpD [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784798|emb|CAE13710.1| sensor protein (histidine kinase) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 897

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 138/264 (52%), Gaps = 14/264 (5%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALR---KADEIKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  +      L+ + E+ +   + ++++NS +  +S++LR+PLT + 
Sbjct: 629 IPEQQRLLQTFTGLIANALERLQLSRRAESAKLDTEREQLRNSLLAALSHDLRTPLTVLF 688

Query: 589 GFTD--LLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           G  +  +L  S  GS ++KQ +Q  + I ++S     LVN++LD+A + +G ++LN    
Sbjct: 689 GQAEILMLDLSAEGSPHTKQVNQIRQQILSTS----RLVNNLLDMARIQSGGIQLNLEWQ 744

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L +++    +S+   ++ + + + + SD  L     D   L ++F  +L NA+ ++ + 
Sbjct: 745 SLEEIVGSTLRSLEYALNRHPVAVSLPSDLLLH---CDASLLERVFINLLENAIKYTDEQ 801

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             + +KA  +       V + G  IP +  + +F++F          GVGLGL+I  + I
Sbjct: 802 IPLGIKATTEKNQIHIEVWDAGKGIPPEQEQLIFDKFSRARKESAIPGVGLGLAICRAII 861

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            +H G +  S++++G  + +  +P
Sbjct: 862 EIHQGKIWASNNEKGGASFHFVLP 885


>gi|256829208|ref|YP_003157936.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578384|gb|ACU89520.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1079

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 117/534 (21%), Positives = 220/534 (41%), Gaps = 68/534 (12%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL--WEIDLAFLA 347
           GI  D+S+ +   +++    +++      I + D    +++ N  F EL  +  D A   
Sbjct: 425 GIVRDISERVRTEERMRSLMQMVEQSPACIVMTDPQGNIEYVNPKFTELSGYSFDEA-RG 483

Query: 348 TNPSNDELLEFLRSANKLPEQLN--WKT------WKENIFSVYKSSETHKDTWHL----- 394
            NP        L S  K  E+    W+T      W+    + +K    + ++  +     
Sbjct: 484 QNP------RILGSGYKSREEYQDLWRTIESGRQWRGEFRNRHKDGSLYWESALIAPILD 537

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           P+G+T H +             E++T +   E +         + +D L + V+    D 
Sbjct: 538 PDGRTTHYVAIK----------EDITKRRHTEEELRKRDINFKKIVDILPQLVSYIDKDL 587

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA----IITSFDDE 510
           R +  N  + S +       SPG  I N  A       E  G   F A    I   F  +
Sbjct: 588 RYRFVNATYSSFF-------SPGNLIGNTVA-------EVIGEKAFEATRGHIEQVFQGK 633

Query: 511 RKSLQGTLEL--LSDSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALR 563
                 TL    + +  ++  +IP  ++  ++        ++T   R E +L    +   
Sbjct: 634 TVHYGATLTYPEMGERFVDVYLIPDYSSHGVVDGYYAILNDLTHLKRIEDSLRLAKDEAE 693

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A+++K+ F+ ++S+E+R+PL  I+G   L++ S   +L+++Q + +     SS  L  L
Sbjct: 694 AANKLKSEFLANMSHEIRTPLNGILGMLQLMQGS---NLDAEQQECLHTAIKSSERLTRL 750

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           ++DILD++ ++A  +        + D+   + +     + E  I      D  L   V  
Sbjct: 751 LSDILDISKIEADRLIFREHAFDIMDVEKALTELFGQAVKEAGIAYDFRVDPGLPKQVLG 810

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           D  RL+QI   ++ N++ F+ KG      T +   A      +F V ++G  + E   + 
Sbjct: 811 DEARLVQILFNLVGNSLKFADKGYVSVDITPLPFTAGAPLRLLFCVTDSGLGMSEQTQRD 870

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F+ +     RR  GVGLGL+IV   +   GG + + S     T +   +P
Sbjct: 871 IFEPFIQSDGSYTRRHQGVGLGLTIVRKLVQRMGGSLCLDSVSGQGTAVYVSLP 924


>gi|167762401|ref|ZP_02434528.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC
           43183]
 gi|167699507|gb|EDS16086.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC
           43183]
          Length = 923

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + + + + ++ K  F  ++S+E+R+P+T II   DLL  S  G L++     +  I  ++
Sbjct: 389 EKQYIEEMNQSKLRFFTNISHEIRTPITLIISQVDLLLNS--GKLSTYAYSKLLNIHKNA 446

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L +L++++LD    + G++KL  S   L DLL E            NI   +  + + 
Sbjct: 447 GNLKSLISELLDFRKQEQGLLKLKISQFDLCDLLQEHFVLFKELSANRNISFSLHMNVQH 506

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                DR +L ++ + +LSNA  ++S G T++L     +    FSV +NG+ I E+  + 
Sbjct: 507 CMIWGDRMQLQKVINNLLSNAFKYTSDGGTIVLGFTEKDMVCRFSVTDNGAGISEEDYQK 566

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +F RF    + G   G G+GL++ +  +  H G +++ S
Sbjct: 567 IFERFYQVENIGLYGGTGIGLALTQGIVKAHKGEINVKS 605


>gi|218531622|ref|YP_002422438.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|218523925|gb|ACK84510.1| histidine kinase [Methylobacterium chloromethanicum CM4]
          Length = 1071

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 594 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 651

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     +  +    
Sbjct: 652 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRP 711

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+ +G  V L+        +F++++ G  IPE 
Sbjct: 712 EILPAVVATDEKRLRQILLNLLSNAIKFTPEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 770

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               +F  F   +    R   G GLGL+I      + GG +++ S
Sbjct: 771 DLGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVES 815


>gi|109898859|ref|YP_662114.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109701140|gb|ABG41060.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 572

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  + EA + A E K++F+ ++S+E+R+P+  +IG  +L+  +KL  +   Q  Y+   
Sbjct: 183 ALKHEKEA-KAATEAKSAFLANMSHEIRTPMNGVIGMIELVSQTKLEKV---QQDYIATA 238

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L+ ++NDILD + ++ G + +      +     E+      +  E  +++ +I 
Sbjct: 239 KRSADSLMVIINDILDFSKIEVGELTIELVEFDVEQFFAELLHDQQFQASEKGLKLSLIK 298

Query: 674 DG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSS 729
           +  +    V D  R+ QI + +LSNA+ F+  G   +   L ++ DN +   +V + G  
Sbjct: 299 EELQHTKVVGDPYRIRQIVNNLLSNAIKFTQSGHIQVRYSLTSSSDNLELHCAVTDTGIG 358

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +  +    +F+ F        R+  G GLGLSI +   NL GG + + S
Sbjct: 359 VSNEALPYLFDSFSQADTSTTRKFGGTGLGLSITKQLCNLMGGDIKVQS 407


>gi|331270613|ref|YP_004397105.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329127163|gb|AEB77108.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 710

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 151/319 (47%), Gaps = 17/319 (5%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           KT +N ++  TH +NI     + Y   D   L    I ++ DE     G        VL+
Sbjct: 353 KTTQNIINTLTH-KNIYENRLKKYEHFDNIALMRKTIVNYQDEFCLANG-----EKIVLD 406

Query: 528 YSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              +P+ +    LT +     ++T  ++AE      NE L +  +++  F  ++S+EL++
Sbjct: 407 IFKVPIFDCNNNLTGMVTIGHDLTAHIKAEENSKLLNEML-EYQKLRVEFFANISHELKT 465

Query: 583 PLTNIIG---FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           PL  I+    + +L+        +    +Y   I  +S  L+ +VN+I+D+  +D+G  +
Sbjct: 466 PLNLILSAVQYVELVNNKNFDFNSDSFCKYTNIIKQNSYRLVRIVNNIIDITKIDSGYFQ 525

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           ++     + +L+ ++    A+ +H  ++     ++ +      D   + +I   +LSNA+
Sbjct: 526 IHPENYNIVELVEDICLYCASYIHSKDLDFIFDTETEEKIISCDALIMERIILNLLSNAI 585

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
            F+  G  + +     + +   SVK+ G  IPE+    +F RF  V  +      G G+G
Sbjct: 586 KFTQPGGRITVNIYDKDNEIQISVKDTGIGIPENRQDLIFERFIQVDKSLSRNHEGSGVG 645

Query: 758 LSIVESFINLHGGHVSISS 776
           LS+V++F++LH G + + S
Sbjct: 646 LSLVKAFVDLHNGSIEVKS 664


>gi|255014082|ref|ZP_05286208.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 828

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 20/231 (8%)

Query: 562 LRKADEIKNSFVQH-------VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L KA ++  S ++        +S+++R+PL++IIG+ +LL        + +Q  Y+E + 
Sbjct: 323 LEKAKQVAESLLRSREKLMLTISHDIRAPLSSIIGYIELLLRRHP---DERQQYYLENMK 379

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR----IK 670
            SS  +L+LVND+LD   +++G M+++     +  L +E+  S         +R    +K
Sbjct: 380 GSSDHILSLVNDLLDFQRLESGEMEVHSVPFRVPALFDEIYTSFQPIAEAKGLRFVLNLK 439

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNN 726
               G++  ++ D  R+ Q+   +LSNA+ F+  G  V+L    K +  +     +V ++
Sbjct: 440 PEETGQV--YMGDPIRIRQVVGNLLSNAIKFTEAGRVVLLVSLQKLSAVHYQLSITVSDS 497

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           G  IP++  + +F  F   A   +  G GLGLSI    ++L  G +++ S+
Sbjct: 498 GPGIPKEEQERIFGEFTRLADTEEVEGFGLGLSITRKLLSLMNGTLALDST 548


>gi|159026319|emb|CAO88896.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 641

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 128/244 (52%), Gaps = 10/244 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQ 608
            E  +  + EA   A ++KN F+ + S+ELR+PL  IIG    ++    G  NS++   +
Sbjct: 378 GEEIVKSRQEA-ENASQLKNQFLANTSHELRTPLNGIIGS---IRCVMDGFCNSEEEEKE 433

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++    ++  LL +++DIL +A ++AG + ++   + L+ ++NEV       +   +++
Sbjct: 434 YLQQADKAAVHLLEIIDDILSIAKIEAGKLSVDPEPVDLHQIINEVVSLQTASLQGKHLK 493

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + ++   +     AD  +L Q+   ++SN++ F+  G T+ L    +    I ++ + G 
Sbjct: 494 LNLLFCPENPIVYADPTKLKQVILNVISNSIKFTETG-TISLITHLEYPQAIITIVDTGI 552

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
            I       +F  FV       R+  G GLGL+I ++F+ + GG ++ISS  +G+ TT+ 
Sbjct: 553 GIDPQQQLKLFRPFVMIDGSTTRKFSGTGLGLAISKNFMKVMGGDITISSQGQGLGTTVE 612

Query: 786 CRIP 789
             +P
Sbjct: 613 IILP 616


>gi|167034015|ref|YP_001669246.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas putida GB-1]
 gi|166860503|gb|ABY98910.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas putida GB-1]
          Length = 1371

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +K+ F   +S+EL+ PL  I    D+L+     +     S+ V  I  + T    +++D+
Sbjct: 1002 MKDEFFAVMSHELKHPLNLIQLNADILRRIPSVTSTGMASKAVNVIREAVTSQARIIDDL 1061

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD+A +  G +KL    + L  +L  +      +    ++R+ + +DG+     AD  R+
Sbjct: 1062 LDVARIRTGKLKLKTQPVDLCAVLQGICAVACNEQRGRSVRLTLPADGEPVLVEADSTRV 1121

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             QI   +L+NA+ FS     ++L+  R +      V + G  + ED  + +F  F     
Sbjct: 1122 EQIIWNLLNNALKFSPADGDILLRLTRQDEQARLEVIDQGIGLAEDSLEGIFELFNQATP 1181

Query: 748  RGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             G  R G+G+GLS+V   +  HGG VS+ S   G
Sbjct: 1182 TGHGREGLGIGLSLVRQLVEAHGGAVSVESPGVG 1215


>gi|119963101|ref|YP_946860.1| signal transduction histidine kinase domain-containing protein
           [Arthrobacter aurescens TC1]
 gi|119949960|gb|ABM08871.1| putative signal transduction histidine kinase domains protein
           [Arthrobacter aurescens TC1]
          Length = 541

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 127/258 (49%), Gaps = 23/258 (8%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A +++ F +VTD V A  A              K+ FV +VS+E R+PLT+I+G+ +L+ 
Sbjct: 304 AGSVVVFSDVTDLVNALAA--------------KDDFVANVSHEFRTPLTSILGYVELIL 349

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +L+++  + ++ +  ++  LL LV+D+L    V +G + +    + + +L+    
Sbjct: 350 DDP-DALDARARKQLDIVRRNAERLLTLVSDLL---VVRSGQIVIQPHAVDVAELVRGSV 405

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S   +  +  IR+ +     L + V D  R+ Q+   ++SNA+ +S  G  V + A  D
Sbjct: 406 NSAEPRAAKAGIRLSMDIPEALEAHV-DSSRIAQVLDNLVSNAIKYSPDGGNVEVAAWED 464

Query: 716 NGDFIFS-VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             DF+F  V + G  + E+     F +F            GVGLGL I ++ +  HGG +
Sbjct: 465 Q-DFVFCRVTDTGMGMNEEEQAEAFTKFFRAGGVRNSTIPGVGLGLPISKAIVEAHGGTI 523

Query: 773 SISSSDEGVTTINCRIPS 790
            ++S     TT   +IP+
Sbjct: 524 MVASEPGQGTTFTVKIPA 541


>gi|83312294|ref|YP_422558.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947135|dbj|BAE51999.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 601

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 107/215 (49%), Gaps = 10/215 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+ELR+P+ +I+GF  L   + +    ++    +  +  +   LL +V+DIL
Sbjct: 219 KSDFLAVMSHELRTPIASILGFVQL---AGMAPTLARARAILPKVGRAGRHLLAIVDDIL 275

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRL 687
           D++ ++AG   L+ +   L+++L  V+        E  + + +  SD      V D  RL
Sbjct: 276 DISRIEAGKYALDLAPFSLDEMLGHVEDLTRPLAEEKGVELSLQHSDDAPALLVGDALRL 335

Query: 688 LQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFV 743
            QI   ++ NA+ F+S+G+    +     D    +    V ++G  IP D  +++F  F 
Sbjct: 336 GQILINLVGNAVKFTSRGAVHVTVRTMPIDEISLLLECEVADSGIGIPADRLEAIFEPFT 395

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                  RR  G GLGLS+  + + + GG +++ S
Sbjct: 396 QGDGSTTRRYGGTGLGLSVCRTLVEMMGGEITVES 430


>gi|298206889|ref|YP_003715068.1| two-component system sensor histidine kinase [Croceibacter
           atlanticus HTCC2559]
 gi|83849523|gb|EAP87391.1| two-component system sensor histidine kinase [Croceibacter
           atlanticus HTCC2559]
          Length = 813

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 154/310 (49%), Gaps = 27/310 (8%)

Query: 503 IITSFDDE---RKSLQGTLELLS----DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           IIT+FD E   +  +Q T +  S     ++L+YS +       + T++ + D  +AER  
Sbjct: 245 IITAFDAEIARKNQIQATKKSASVDRTSTILKYSGVLGIFIILLFTYIILNDFFKAERFK 304

Query: 556 TEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
               ++   ++E+   +   +  VS++L++PL  I+G++DL++ +    L  KQ  YV  
Sbjct: 305 ISLKKSKDYSEELLKSREQLISTVSHDLKTPLNTIVGYSDLIENT---DLTEKQLYYVNQ 361

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM---HENNIRI 669
           I+ SS  +  LV+D+LD + ++AG  KL+  TI  + L + ++Q++ T      + N+ I
Sbjct: 362 ITNSSLYVTKLVDDLLDFSKLEAG--KLHIETIPFS-LESIIQQTVETSKDVHQQKNVAI 418

Query: 670 KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSV 723
            +  D  + +  F +D  R+ QI S ++ NA  F+ +GS      IL+      +    V
Sbjct: 419 HLYVDQAISNQVFESDPLRIRQILSNLIGNAFKFTEEGSVTVYAKILEQKAQEFEIEIKV 478

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I ++  + +F  F        +R  G GLGL+I     NL  G +++ S+    
Sbjct: 479 VDTGIGISKEKQELIFKEFQQAEADTIKRFGGNGLGLAISRKLTNLLHGTLTVDSTPNQG 538

Query: 782 TTINCRIPSK 791
           +T    +P K
Sbjct: 539 STFTLVLPLK 548


>gi|329849848|ref|ZP_08264694.1| histidine protein kinase divJ [Asticcacaulis biprosthecum C19]
 gi|328841759|gb|EGF91329.1| histidine protein kinase divJ [Asticcacaulis biprosthecum C19]
          Length = 570

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 103/196 (52%), Gaps = 3/196 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K  F+  +S+ELR+PL  +IGF+D+++    G L+ K ++Y + I  S   +L+++N
Sbjct: 314 NQSKTKFLASMSHELRTPLNAVIGFSDIMRQKLFGDLSPKYTEYAQLIWESGQHVLDMIN 373

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD++ ++A   +L   T  L + ++   + I    H+  I I         +  AD++
Sbjct: 374 DVLDMSKIEAQKYELTLETFDLREPVSGALRLIRAAAHDKAIEITSTMPVSSLTVTADKR 433

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI-PEDMCKSVFNRFVS 744
            + QI   +LSNA+ F+ KG  V L       +   ++++ G  I P+D+ +    +   
Sbjct: 434 AIKQICLNLLSNAVKFTPKGGDVALVLGHSANEVEITIRDTGIGIAPDDLSR--LGQPYE 491

Query: 745 NAHRGQRRGVGLGLSI 760
            A   +++ +G GL +
Sbjct: 492 QAGPAEQKAMGTGLGL 507


>gi|323485061|ref|ZP_08090414.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323401617|gb|EGA93962.1| sensor protein [Clostridium symbiosum WAL-14163]
          Length = 814

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 21/255 (8%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFT 591
           ++   +VT   R ++ LTE+ EAL+       +A+  K  F+  +S+E+R+P+  IIG T
Sbjct: 261 LIDITDVTQLRRMQKKLTEQTEALKDALAVAERANHAKTDFLSRMSHEIRTPMNAIIGMT 320

Query: 592 DLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               T     +  +Q  +  +E I  SS  L++L+NDILD++ +DAG MK+ +    L  
Sbjct: 321 ----TIAGAYIEDRQRVAGCLEKIGYSSKHLMSLINDILDMSKIDAGKMKIAHEAFDLKT 376

Query: 650 LLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +   +   I  +  E  +   V + +      + D  RL QI   +LSN++ F+ KG T+
Sbjct: 377 VAESITSIIYPQAVEKGLLFTVPLIELTETVMIGDAMRLNQILLNLLSNSLKFTPKGGTI 436

Query: 709 IL-----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQR-RGVGLGLSIV 761
            L     +  R      F+V + G  +  +  K +F  F   +   GQ+  G GLG++I 
Sbjct: 437 RLEIRQIQRKRSRVRLGFTVCDTGYGMSREFMKRLFTPFEQESVAAGQKFGGTGLGMAIT 496

Query: 762 ESFINLHGGHVSISS 776
            + + L GG +S+ S
Sbjct: 497 RNLVMLMGGTISVKS 511


>gi|296502132|ref|YP_003663832.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296323184|gb|ADH06112.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 604

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 142/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ + 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNID 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++ +G  + +       +    ++N G+ IPE
Sbjct: 482 ADPSI-LVKANRSRIEQVVVNLLSNAIRYTPEGEKIQVSIIEAEDNVKVEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|288556694|ref|YP_003428629.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547854|gb|ADC51737.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 461

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +L++  + +  F+ ++S++LR+PLT I G++ LLK  +L     K+   + Y  AS   +
Sbjct: 231 SLKEYRDERQQFLTNISHDLRTPLTYIKGYSALLKDQQLEPPVVKEQSNIIYQEASR--M 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            +LV D+  L   + G   L+     L    ++++  +   +    + +KV +       
Sbjct: 289 EHLVQDLFHLMKYEEGSFHLDVERTDLKGFFDQIQTKLKLDIQSKQLNLKVHAANDDMYV 348

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             DR +  +    +LSNA+  +  G  + +   R+    +  +++NG+ IPE     ++ 
Sbjct: 349 AIDRGQFERAVMNLLSNAIRHTQPGGEINVALTRETQRCMIEIRDNGTGIPEKDLDRIWE 408

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF  V ++   +  G GLGL+I +  I+LH G +S+SS     TT    IP++
Sbjct: 409 RFYRVDSSRSTKLGGSGLGLAITKEIIHLHHGLISVSSKMGEGTTFIIEIPAE 461


>gi|253564188|ref|ZP_04841645.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947964|gb|EES88246.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 671

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 13/238 (5%)

Query: 549 VRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++  + L E  E LRKA E       +K +F+Q +S+E+R+PL +I+GF+ +L       
Sbjct: 421 IQQNKELVENGEELRKAKEQAENASRMKTTFIQSMSHEIRTPLNSIVGFSQVLSNYFKEE 480

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIAT 660
            N +  ++   I  SS+ LL L+ND+LD++ +D   I+  +    + N  L  ++++  +
Sbjct: 481 DNDEIKEFASIIEISSSNLLRLINDVLDISYLDQSEILPYDKPEDINNCCLLSIERTRNS 540

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF 719
              E ++R +  S G L   + + +R+ QI + +L NA+ F+ KG+ T+    +      
Sbjct: 541 IKKEVSLRFEP-SCGPL-MILTNPERVAQILTHLLHNAIKFTDKGNITLAYTISPTEKQI 598

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +++V + G  IP +  + VF RF       Q  G GLGL I        GG + I  +
Sbjct: 599 VYTVTDTGKGIPVEQQEYVFERFAKLNDFSQ--GTGLGLPICRIIAEKLGGSLIIDKT 654


>gi|163786010|ref|ZP_02180458.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Flavobacteriales
           bacterium ALC-1]
 gi|159877870|gb|EDP71926.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Flavobacteriales
           bacterium ALC-1]
          Length = 922

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 116/231 (50%), Gaps = 4/231 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  LR+ D  K+ F  ++S+E R+PLT I    D  +  +  SL   + +  +    +S 
Sbjct: 404 NTKLRELDATKSRFFANISHEFRTPLTLISNPID--EAIEDNSLPEGKREQFKVAKRNSD 461

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL LVN +LDL+ +DA  +KLN     L   +  +  S +    +  +   V ++    
Sbjct: 462 RLLTLVNQLLDLSKIDANQLKLNIEKAELIPFIAALADSFSYSAEQKEVSYLVNAERNST 521

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D+  + +I + +++NA+ ++     + L  +  +   +F VKN+GS + +   K V
Sbjct: 522 EVYFDKDAIEKIVTNLIANAIKYTPSKEEIKLSCSIVDDQLLFEVKNSGSQLTQKEAKVV 581

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FNRF          G G+GL++ +  ++LH G+++++ +++   + + ++P
Sbjct: 582 FNRFYQTNEDNS--GSGIGLALAKELVDLHKGNIAVNITEDNWISFSVKLP 630


>gi|126641439|ref|YP_001084423.1| putative two-component sensor kinase [Acinetobacter baumannii ATCC
           17978]
          Length = 1089

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 135/261 (51%), Gaps = 8/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +       + L +   A  +A++ K+ +V  +S+ELR+PL +I+G++ LL+ 
Sbjct: 587 QTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 646

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L+ +    +  IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q
Sbjct: 647 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 704

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  + N++        L  +V  D++RL Q+   +L NA+ F++ G T+ LK    
Sbjct: 705 MFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 763

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I E   + +FN F   SN  +G   G GLGL IV+  ++L GG +S
Sbjct: 764 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLS 823

Query: 774 ISSS-DEGVT-TINCRIPSKE 792
           ++S  ++G    I   +PSKE
Sbjct: 824 VTSQLNQGSQFKIKFYLPSKE 844


>gi|15614508|ref|NP_242811.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174563|dbj|BAB05664.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 462

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 111/228 (48%), Gaps = 8/228 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +L + +E +  F+  VS+ELR+PL+ + G+ + ++   +       S+ +  I   +  L
Sbjct: 236 SLERVEEKRREFLADVSHELRTPLSYMKGYAEGVEEGVIDP-----SKGLSIIQKEANRL 290

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LVND+LDLA ++     +    I    L+ EV +       +  +++ +  D  +   
Sbjct: 291 ERLVNDLLDLAQLEGESYVMKDEPIAFAQLVYEVVEQFRYLAAQKRLQVHLDLDEDV-II 349

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  R+ Q+   +L NA+ ++ + +T+ L   R+     F + + G  IPED    VF 
Sbjct: 350 SGDPDRIEQVIRNLLDNAIKYAHEETTISLTIGREGSRAQFILSDQGIGIPEDKLALVFE 409

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           RF  V+ +   ++ G GLGL+I    I  HGG + I+S +   TT+  
Sbjct: 410 RFYRVNKSRSRKKGGTGLGLAIASQIIKKHGGTIDITSQELKGTTVTI 457


>gi|150389322|ref|YP_001319371.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149949184|gb|ABR47712.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 518

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 117/242 (48%), Gaps = 6/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +++      L + ++++  F+ +VS+E++SPL +I GF  LL+  +L     ++  Y
Sbjct: 278 RLVKSVNMMASGLDQMEKMRQEFISNVSHEIQSPLASIQGFAQLLQNDELSP--EERKHY 335

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   S  L  L + +L LA +++  M+       L+  L  +  +   +  E  I +
Sbjct: 336 LSIIETESKRLSKLSDSLLKLAILESDSMRFEPKAYRLDKQLRNLILACEPQWREKRINM 395

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +   D    +  AD   + Q++  ++ N++ F+ +G +V +   +     +  + + G  
Sbjct: 396 EAFLDEV--TITADEDMMSQVWINLIYNSIKFTPEGGSVRVDLNQHGKTIVCKISDTGIG 453

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+  K +F RF     +    ++G GLGLSI +  I++H G +S+ S     TT    
Sbjct: 454 IPEEDQKHIFERFYKADKSRERSKKGGGLGLSITKKIIDMHYGDISVQSKSGTGTTFTVS 513

Query: 788 IP 789
           +P
Sbjct: 514 LP 515


>gi|134292637|ref|YP_001116373.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135794|gb|ABO56908.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1021

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 13/254 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           TD+    R + +  EA+R AD     K+SF+   S+E+R+PL  I+G  +LL+ +   +L
Sbjct: 478 TDTTAQRRLVQQLEEAVRAADSANAAKSSFLAATSHEIRTPLNVILGNLELLERT---AL 534

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++ Q   V  + AS+  LL +V+DILD + ++AG M +      L  ++ +   + A   
Sbjct: 535 DASQQSRVRTLRASAEGLLAIVSDILDFSKIEAGAMSVESIEFELIAVIEQQLAAFAPIA 594

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG 717
               + + V  D  +   +  D  RL Q+   +LSNA+ F+S+G       +   AR   
Sbjct: 595 KAKGLPLFVEIDASVEQRMRGDPTRLAQVLGNLLSNAIKFTSEGHIAARVAVWPDARGVP 654

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           +   SV++ G  I       +F  F        RR  G GLGL++ +  +   GG +S+ 
Sbjct: 655 EVELSVEDTGIGIEPTQRARLFKPFSQVDASITRRYGGTGLGLALCDRLVTAMGGTLSVE 714

Query: 776 SSDEGVTTINCRIP 789
           S+ +  +  +  +P
Sbjct: 715 STPQVGSVFSVHLP 728


>gi|308068862|ref|YP_003870467.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858141|gb|ADM69929.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 457

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 118/238 (49%), Gaps = 21/238 (8%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++  + ++ F  +VS+ELR+P+T + G+ ++L    +     KQ QY+  I+  +  L 
Sbjct: 229 LKRYRDTRSEFFANVSHELRTPVTYLKGYANVLANGLVDHEEEKQ-QYLHIIADEAHRLT 287

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG------ 675
            ++ND+ +LA ++ G +  +  ++   D+   V++S       N +RIK    G      
Sbjct: 288 VIINDLFELAKMEEGKIAFHLESV---DVRRAVEKS------ANKVRIKAEQKGLQLVSA 338

Query: 676 --KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +   + D  RL Q+   +L NA+ ++++G  + L   ++NG  +  + ++G  IP D
Sbjct: 339 LETIPRCLVDPVRLEQVLLNLLDNAIRYTTEGD-IELTLQQENGFGVIMISDSGPGIPPD 397

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RF  V  +   +  G GLGL+IV+ ++ L GG + + S     T      P
Sbjct: 398 ELPYIFERFYRVEKSRSRELGGTGLGLAIVQKWVQLQGGMIEVESELGRGTVFRLSFP 455


>gi|302335809|ref|YP_003801016.1| histidine kinase [Olsenella uli DSM 7084]
 gi|301319649|gb|ADK68136.1| histidine kinase [Olsenella uli DSM 7084]
          Length = 414

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 122/246 (49%), Gaps = 7/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSK 605
           D +R +R      +A + A++ K+  V ++++++R+PLT I+G+ D+L+ T  L S    
Sbjct: 158 DLLRIQRRALSDAKAAKMAEQRKDELVAYIAHDIRTPLTTILGYLDILRSTPDLPS--DA 215

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +Y +    S+T L +L+++  ++   +   + L      +  L  +V++ +       
Sbjct: 216 RGRYAQISYDSATRLNDLLDEFFEVTRYNLQSIPLKREDTDVALLCRQVEEELHPDSQAR 275

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + I      +L  F+ D ++  ++ S +L NA+ F+S G+TV + A    G  +  V +
Sbjct: 276 GVAIAHGGPDELVWFI-DPEKFARVLSNVLRNAIAFASPGTTVNVDARTKEGGLVVCVTD 334

Query: 726 NGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F +F     A   +R   GLGL+I +  +  HGG +  ++S  G TT
Sbjct: 335 CGREISAEHLGLIFEKFYREDGARPAERGRAGLGLAIAKELVVAHGGDIR-AASKLGETT 393

Query: 784 INCRIP 789
              RIP
Sbjct: 394 FTIRIP 399


>gi|260426521|ref|ZP_05780500.1| sensory box histidine kinase/response regulator [Citreicella sp.
           SE45]
 gi|260421013|gb|EEX14264.1| sensory box histidine kinase/response regulator [Citreicella sp.
           SE45]
          Length = 858

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 12/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  LTE  +     +  K+ F+  +S+E+R+PL  ++G   LL+  +L     +Q   ++
Sbjct: 345 EEQLTEARDRALAGERSKSEFLAVMSHEMRTPLNGLLGTLQLLRDEEL---TERQCAMID 401

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIRI 669
              AS  +LL LVND+LDL   +AG M   ++   L  L+  V +++      + N +  
Sbjct: 402 RTEASGRLLLELVNDVLDLTKFEAGKMTAEHAPFSLTALVGGVVETVRPIADRYRNALSW 461

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFI-FSVKNN 726
           + +  G  G +V  D +RL Q+   ++ NA+ F+  G+  I     D+ G+ +   V ++
Sbjct: 462 RWV--GPEGDWVDGDARRLRQVLLNLVGNALKFTRDGTVEIEAEYLDDVGNALELRVIDS 519

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+    +F  F  + +++  +  G GLGL I + F  L GG +   S     +  
Sbjct: 520 GIGIREEDLARIFRDFETLDSSYAREAGGTGLGLGIAQRFARLMGGSIGAESEPGEGSLF 579

Query: 785 NCRIP 789
             R+P
Sbjct: 580 WVRLP 584


>gi|229126876|ref|ZP_04255888.1| hypothetical protein bcere0015_13330 [Bacillus cereus BDRD-Cer4]
 gi|228656816|gb|EEL12642.1| hypothetical protein bcere0015_13330 [Bacillus cereus BDRD-Cer4]
          Length = 604

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 142/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ + 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNID 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++ +G  + +       +    ++N G+ IPE
Sbjct: 482 ADPSI-LVKANRSRIEQVVVNLLSNAIRYTPEGEKIQVSIIEAEDNVKVEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|254489411|ref|ZP_05102614.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
 gi|214041918|gb|EEB82558.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
          Length = 376

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 18/234 (7%)

Query: 561 ALRKADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           AL KAD     K++FV  +++ELR+PLT++ G   L    ++G+   +    +E    SS
Sbjct: 138 ALEKADTANREKDNFVSVINHELRTPLTSLNGAIALALNDQIGADGDRVRSLLEIAERSS 197

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + L  LV++IL    +D   ++L+ + I    VL D   E K + ++K H     ++V  
Sbjct: 198 SRLSKLVDNILLAQKIDIDALELDETVIDIGRVLKDSFEENK-TFSSKCH-----LEVFD 251

Query: 674 DG-KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           D  K   F+  D   + QI   ++SNA+ FS KG TV  K + D+G    S+ ++G  IP
Sbjct: 252 DSLKNPPFIIGDEFAVRQIIDNMVSNAIKFSEKGDTVRGKISEDHGKVRVSIIDSGEGIP 311

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + M  +VF RF  V N  +G  +G GLGL I         G++S   S+ GV T
Sbjct: 312 DGMEGAVFGRFEQVKNKKQGSTQGTGLGLHISRKLAGKMSGNLSY-KSELGVGT 364


>gi|189218172|ref|YP_001938814.1| phosphate regulon sensor protein phoR [Methylacidiphilum infernorum
           V4]
 gi|189185030|gb|ACD82215.1| Phosphate regulon sensor protein phoR [Methylacidiphilum infernorum
           V4]
          Length = 439

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 121/259 (46%), Gaps = 17/259 (6%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LP+   +L F ++T+              ++  +E +  FV +VS+ELR+PL    G+ +
Sbjct: 182 LPSDIMVLVFRDITE--------------IKMFEEARKEFVINVSHELRTPLAIFKGYVE 227

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L  +   S  S+  +  E +      L +L+ D+L LA +++  + +  + + + + L 
Sbjct: 228 TLTDNPRLS-KSEVKRIYEILKKHCQRLSSLIEDLLLLAKLESRKLTIETTPVSIAEFLE 286

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E  Q +     +    + ++ +  L +   D     Q    ++ NA+ FS     ++++A
Sbjct: 287 ETIQDLHPLFKQKECTVNLLIEPDLPTVEIDPFWFQQAVYNLVDNALKFSIPPRKLVIEA 346

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGG 770
            + + +F+  + +NG  IP      +F+RF     +   +++G GLGLSI +  + LHGG
Sbjct: 347 QKIDQNFVLKIIDNGFGIPSKDLPFIFDRFYRGDKSRSSEQKGTGLGLSITKQIVELHGG 406

Query: 771 HVSISSSDEGVTTINCRIP 789
            +   S  E  TT+    P
Sbjct: 407 QIRAISEPEKGTTMELTFP 425


>gi|148381289|ref|YP_001255830.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|148290773|emb|CAL84907.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 461

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +    +++  E +  F+ ++S++LR+PLT+I+GF +LLK  K   +  ++  Y+  I
Sbjct: 228 ALNDMGGKIKENKENEKEFLLNISHDLRTPLTSILGFLNLLKQKKY-DIEEEREGYINTI 286

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L  L+++    +T+    +KLN   I L ++L ++      ++ EN I + +  
Sbjct: 287 EEQSLYLKTLIDEFFQFSTLKWKNVKLNKENINLQEILRQISDGFYPQLKENKISVSMNF 346

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG-SSIPE 732
             K      D  + +++   ++SNA+ +S KG+ + L    +    +    N    ++ E
Sbjct: 347 PEKSLYKEVDVDKFMRVLENVISNAIKYSHKGTEISLNLYENKDKIVMEFWNTPIEALKE 406

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           D    +F RF         +G GLGLSI    + LHGG +     +E +  I
Sbjct: 407 DELDFLFKRFYKKDLSRGNKGAGLGLSIALEAVKLHGGELYAVMKNERLGII 458


>gi|262394675|ref|YP_003286529.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|262338269|gb|ACY52064.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 806

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 11/227 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     L   Q +++  +  S   ++ L+N+I
Sbjct: 353 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LTDDQRKHLRTLYDSGDHMMTLLNEI 408

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G ++   +   +  ++  +K    T   E  +R  V+S    G  +  D+ R
Sbjct: 409 LDYSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLRFGVVSHLPTGRWYNNDKAR 468

Query: 687 LLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           L Q+   +L+NA+ F+ +G   +    K+++     I +VK+ G  I ++  K +F  F 
Sbjct: 469 LRQVLFNLLNNAVKFTDRGIVEVELTEKSSKAGTKLILAVKDTGIGISQEAQKRIFRPFE 528

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  RR  G GLGL+IV+      GGHV + S +   TT    I
Sbjct: 529 QAESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVGTTFTVEI 575


>gi|42780661|ref|NP_977908.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42736581|gb|AAS40516.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 603

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 142/292 (48%), Gaps = 33/292 (11%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 325 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 364

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   + Y + 
Sbjct: 365 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTTYYTDV 420

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L+ +V   +   M E ++++ + 
Sbjct: 421 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELIQQVYTKLLFSMEEKHLQVNID 480

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D  +  FV A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IP
Sbjct: 481 VDPSI--FVKANRSRIEQVVVNLLSNAIRYTPDGEKIQVSVMEMEDTVKVEIENTGNPIP 538

Query: 732 EDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           E+  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 539 EESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 590


>gi|86145892|ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222]
 gi|85836347|gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222]
          Length = 1223

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 12/216 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+E+R+P+  IIG + L LKT     L   Q  Y+  +  SS  LL L+NDI
Sbjct: 480 KSDFLANMSHEIRTPMNAIIGMSYLALKTD----LTKAQRNYIHKVKLSSDTLLGLINDI 535

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++AG + +      L ++L+ +   +  +  +  + + +  D  + +  + D  R
Sbjct: 536 LDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGDPLR 595

Query: 687 LLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRF 742
           L QI   + +NA+ F+ KG   I +  A   GD I   F+V ++G  + ++    +F +F
Sbjct: 596 LGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSGIGMKQEQASKLFTKF 655

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                   R+  G GLGL+I +    L GG + +S+
Sbjct: 656 TQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVST 691


>gi|329957698|ref|ZP_08298173.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522575|gb|EGF49684.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1347

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 22/248 (8%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +R ER   E+ E +    ++K  F  ++S+ELR+PLT I+     L +   G    ++  
Sbjct: 814  IRMERLDKERREEI---SQMKIRFYINISHELRTPLTLIVAPLQELLSGVAGHWEREK-- 868

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKL-----NYSTIVLNDLLNEVKQSIATKMH 663
             + YI  ++  LL+LVN ++D    + GI +L     N    VL++ LN   +S+A +  
Sbjct: 869  -LLYIQRNTKRLLHLVNQLMDYRRAELGIFELKPIYANAYKRVLSNFLN--YESLAKR-- 923

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +I     S+ +    + D   L  I + +LSNA  ++ +G ++ +K  R+N   +  V
Sbjct: 924  -KDIDYNFYSELQDDEVLFDGTYLDLIINNLLSNAFKYTEEGESISVKLYRENKYIVLQV 982

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G  IP+D  + +F RF  + N H G     G+GLS+V+  + LH G +++ S     
Sbjct: 983  IDTGVGIPDDKQQKIFERFYQMENGHEGS----GIGLSLVQRLVELHHGQITLVSEVGKG 1038

Query: 782  TTINCRIP 789
            +T +  IP
Sbjct: 1039 STFSIYIP 1046


>gi|304392331|ref|ZP_07374272.1| two-component sensor/response regulator hybrid [Ahrensia sp.
           R2A130]
 gi|303295435|gb|EFL89794.1| two-component sensor/response regulator hybrid [Ahrensia sp.
           R2A130]
          Length = 708

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 6/226 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K+ F+  +S+E+R+PL  ++G   LL  + L   ++ Q  ++  +  S   LL L+ D
Sbjct: 239 EAKSRFLATISHEVRTPLNGVMGVAQLLARTPL---DATQRDHLSILKTSGDTLLALIED 295

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQ 685
           +LD A ++ G + +    + L  LL  V   +A++    ++ I    D  L  S +AD  
Sbjct: 296 LLDTARMEQGDLSIQTEPVKLEQLLEGVAAMMASRAAAKSLPISTYIDPTLPASILADGG 355

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q+   +L NA+ F+ +GS  +        +    V + G  I +     +F  FV  
Sbjct: 356 RLRQVLVNLLGNALKFTDQGSVSLCAHRHSIDELCLVVSDTGPGIADKDRDRIFQPFVQT 415

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                R   G GLGL+I    +   GG +S+S+  +  +     +P
Sbjct: 416 DDGSTRAHNGAGLGLAISRHIVVRMGGDISVSTGKDSGSVFTVTLP 461


>gi|302870949|ref|YP_003839585.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573808|gb|ADL41599.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 450

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 13/231 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + +T   + L K ++++  F+ + ++ELR+PL+ I  + + +    L     K+  Y   
Sbjct: 221 KTITFMAQNLSKTEKLRRDFIANTTHELRTPLSIIKSYAEAIYDDILNKDQIKEYAYSIM 280

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + A    L NL+N+IL+L+ + +G ++LN   I L  L NE+   +   + + N +  + 
Sbjct: 281 VEADH--LNNLINEILELSKLQSGTIQLNIQPINLKSLFNEIISEV--NIIKGNRKFWLF 336

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731
            D  +    AD + L + FS I+ NA++ ++    V +KA ++N DFI  S+K++G  I 
Sbjct: 337 EDDIVTK--ADSKLLKRAFSNIIINAVNHTNDTGNVYIKAEKEN-DFIKVSIKDDGEGID 393

Query: 732 EDMCKSVFNRFVSNAHRGQRRGV-GLGLSIVESFINLHGGHVSI-SSSDEG 780
           E     +FNRF S   +  ++G+ GLGL+I +  I +H G +S+ S   EG
Sbjct: 394 EADLPYIFNRFYS---KSAKKGIGGLGLAIAKEIIQMHNGEISVFSKKGEG 441


>gi|253578668|ref|ZP_04855939.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849611|gb|EES77570.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 640

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 133/252 (52%), Gaps = 17/252 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQ 608
           + ++ L    E    A++ K++F+  +S+++R+P+  IIGFT++ L  + +  ++     
Sbjct: 244 KQKQLLMTAAEEADAANKAKSAFLLSISHDIRTPMNAIIGFTNIALHQNTVSDIHDS--- 300

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E +  SS  LL+L+ND+LD   +++G + ++   + +  L + V+  +   ++  +++
Sbjct: 301 -LEKVQKSSNHLLSLLNDVLDFTRIESGKVTISPEPMDITQLTDNVQAIMNGLLYNRDLK 359

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFI--F 721
            +V  +     +V AD  R+ ++   +L NA+ F+  G  + L        D    I  +
Sbjct: 360 FEVHREISKNPYVLADVVRIREVLVNLLGNAVKFTKDGGKITLDISSYPGADEKHIITRY 419

Query: 722 SVKNNGSSIPEDMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            V++NG  + E+  K +F+ F     +NA R Q +G GLG++I + ++++ GG +++ S 
Sbjct: 420 VVRDNGIGMSEEFQKKLFDPFSQEDDANA-RTQYKGTGLGMAITKKYVDMMGGSIAVESK 478

Query: 778 DEGVTTINCRIP 789
               +T    IP
Sbjct: 479 KGVGSTFTVEIP 490


>gi|150018828|ref|YP_001311082.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149905293|gb|ABR36126.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 502

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 134/250 (53%), Gaps = 28/250 (11%)

Query: 550 RAERALTEK-----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + +RALT++      EA   A+  K+ F+ ++S+E+R+PL  IIG TDL  ++   +L  
Sbjct: 3   KFDRALTKEELFKLKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTDLTLST---NLTE 59

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIAT- 660
           +Q + +  + + +  LL+L+N+ILDL+ ++A    I  +N++  VL      +K  I T 
Sbjct: 60  EQKENLSIVKSCAHSLLSLINNILDLSKIEAEKVLIENVNFNIQVL------IKNVIYTN 113

Query: 661 --KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
             K +E  I++    D  +    V D  RL Q+ + ++SNA+ F+  G  +I    +  +
Sbjct: 114 LPKANEKYIQLHYTIDENIPQVLVGDVYRLEQVLNNLVSNAVKFTESGFVIIKVRKINKS 173

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           ++  +  F V++ G  I  D  + +F  F  V  +   +  G GLGLSI +  + L GG+
Sbjct: 174 KNEYEIQFVVEDVGIGISRDEMQHLFKSFSQVDGSITRKYGGTGLGLSISKKLVELMGGN 233

Query: 772 VSISSSDEGV 781
           + +  S++GV
Sbjct: 234 IEV-ESEKGV 242


>gi|312960762|ref|ZP_07775267.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
 gi|311284420|gb|EFQ62996.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
          Length = 1234

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 21/285 (7%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADE 567
           ER+ +Q +LE +              A+  +T  + T+ + A+    +  +N+A   A++
Sbjct: 506 ERQQVQASLERMV-------------AERTVTLHHQTEVLEAQAIELIQARNQA-DSANQ 551

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ FV  VS+ELR+PLT I+   + L  + L  + +     +E    ++  L+N VNDI
Sbjct: 552 AKSDFVATVSHELRTPLTLILAPLEQLSAATL--VPADWRVQIERAQRNALRLMNRVNDI 609

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD +  +AG  ++  + + LN+ +  + +  A         +    D  LG+   D +  
Sbjct: 610 LDFSKAEAGKFEVCPTLVDLNNAVGVLAEDAAMVAEGKGCTLTCSIDPALGTVFLDPRHF 669

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VS 744
            +I   ++SNA+ F+  G TV L     +G+ F  +V+++G  I  +    +F RF  + 
Sbjct: 670 EKILLNLVSNAIKFTPAGGTVHLAVTPLDGERFELAVQDSGIGIAPEELPLLFQRFSQID 729

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           N+      G G+GL++V+  + L GG V +SS     +    R+P
Sbjct: 730 NSATRHYSGTGIGLALVKDLVELMGGEVGVSSEPGRGSCFFVRLP 774


>gi|298481013|ref|ZP_06999208.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298273036|gb|EFI14602.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 628

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 133/250 (53%), Gaps = 11/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++     
Sbjct: 383 DITELKRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTESA--- 439

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++  Y   I  ++ +LLNL+ND++DL+ +++G ++L    + L +LL+E   S+A   H
Sbjct: 440 AEKELYNSLIGHNNKLLLNLINDVIDLSKIESGYLELRPDWVNLTELLDE---SVAEYAH 496

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++++++      +   D+ R+ QI S  LSNA+  ++ G   +     D+     
Sbjct: 497 QVPSGVELLTNYPAHDSLVELDKLRIKQILSNFLSNALKNTTTGHVEVFYEV-DHQSVRI 555

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  IP++M + +F RF       Q  G GLGL I +  +    G + + S     
Sbjct: 556 GVKDTGRGIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIG 613

Query: 782 TTINCRIPSK 791
           TT    +P +
Sbjct: 614 TTFIIELPCR 623


>gi|288871335|ref|ZP_06117244.2| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288863842|gb|EFC96140.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 894

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 12/236 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+   L  + E    A   K+ F+  +S+E+R+PL  I+G  +L K         +    
Sbjct: 354 RSNELLRLEKERAEAASRAKSDFLSQMSHEIRTPLNGIMGMVELGKNHI--DEPGRMRNC 411

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ SST LL+L+NDILD++ +++G ++L+     L  LL  +      +     I  
Sbjct: 412 LDKITFSSTHLLSLINDILDMSKIESGKIELHPELFDLGKLLRALTTVFHVQAINRQIDF 471

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGD--FIFSV 723
           ++   G++  + V D  RL QI + +LSNA+ F+    +V L      RD+      F V
Sbjct: 472 QIFLRGEVTEYLVGDALRLNQILTNLLSNAVKFTPAQGSVNLNIETLRRDDHRIWLRFEV 531

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           K+ G  I  +    +F  F +  + G  R   G GLGL I  SF  + GG +++SS
Sbjct: 532 KDTGRGIAPENIHRIFEPF-TQENSGIARNYGGTGLGLPITRSFTEMMGGSITVSS 586


>gi|187778664|ref|ZP_02995137.1| hypothetical protein CLOSPO_02259 [Clostridium sporogenes ATCC
           15579]
 gi|187772289|gb|EDU36091.1| hypothetical protein CLOSPO_02259 [Clostridium sporogenes ATCC
           15579]
          Length = 702

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 6/234 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L K +++K+ F   +S+ELR+PLT I     L        +N    + ++ I+ ++ 
Sbjct: 439 NLELEKVNKLKDEFFTIISHELRTPLTIIYSSLQLAYDIYSKDINPSIDKILKRINQNTA 498

Query: 619 ILLNLVNDILDLATVDAGIMKLN--YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            LL L+N+ILD++  +AG + LN  Y  +V       +  SI    +  NI +   +  +
Sbjct: 499 RLLKLINNILDISKAEAGFLALNNEYFDVVWE--TENIVNSITNYANSKNINLIFDTTKE 556

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D+ +  +I   +LSNA+ F+ +  ++ +       +F   VK+ G+ IP++   
Sbjct: 557 EEKVWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIYKNNFKLIVKDEGAGIPKEKID 616

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +FNRF  V+++      G G+GLS+V+  ++L GG + ++S+    TT   +I
Sbjct: 617 CIFNRFAQVNSSLSRNAEGTGIGLSLVKKIVDLMGGEIKVNSTLGKGTTFTVKI 670


>gi|169333797|ref|ZP_02860990.1| hypothetical protein ANASTE_00182 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259362|gb|EDS73328.1| hypothetical protein ANASTE_00182 [Anaerofustis stercorihominis DSM
           17244]
          Length = 710

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+SF+ ++S+E+R+PL  I+G   L++ + +G    K  +Y++    S+  L +
Sbjct: 328 REAEQAKSSFLANMSHEIRTPLNGIVGLHYLMRKN-IGD-KDKMLEYLKKADVSAEYLKS 385

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           +++D+L+++ +++G +++  + + LN  +N++   I T+  +  +  ++ S+  +G   +
Sbjct: 386 VISDVLNMSKIESGQIEIYKNDMDLNKFINDIDILIGTQAKDKRLHFEIDSNNIIGYHII 445

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKS 737
            D  RL QI   +L NA+ F+ +  ++ LK  +   + I    F++ + G  +  +  + 
Sbjct: 446 GDETRLKQIIVNLLGNALKFTPEEGSIFLKIEQAESNNILNTKFTISDTGCGMSPEFLEK 505

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++  F        + G GLG ++ + F+   GG++ + S     TT    IP
Sbjct: 506 IWIPFEQERRYNSQNGTGLGTTLSKIFVEKMGGNIEVQSKVNEGTTFIINIP 557


>gi|115372373|ref|ZP_01459682.1| putative sensory histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115370586|gb|EAU69512.1| putative sensory histidine kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 855

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 9/234 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQYVEY 612
           +  + LR+A  +++ F+   S+ELR+PLT +    +LL      +++  L  +Q   +E 
Sbjct: 610 QTQKELREAITLRDQFLSMASHELRTPLTPLKATVELLLRQSDENQVLPLE-RQRSTLER 668

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           +      L  LV+D+LD+A +  G + +  +++ L  L  EV   I     E +  I++ 
Sbjct: 669 LRRQVDRLTRLVSDMLDMARIQGGRLAMRRASMDLTALAREVADRIQHSSRERSAPIQLE 728

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + +G L   V D QRL Q+ + ++ NA  +S   + + +         +  VK+ G  +P
Sbjct: 729 LPEGPLLG-VWDEQRLDQLLTNLIENAARYSPPDAPIQVCIGSTADRALIEVKDQGIGVP 787

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            +   S+F  F    NA +    G+GLGL+I    +  HGG +  SS+  G  T
Sbjct: 788 AESLPSLFTPFYRARNAAQHYAGGLGLGLAICREIVERHGGTIQASSAGPGQGT 841


>gi|70729884|ref|YP_259623.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68344183|gb|AAY91789.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1198

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 125/243 (51%), Gaps = 13/243 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLG 600
           ++++++  +  + LT+  +   KA+  K +F+  +S+E+R+P++ ++G  +L LK +  G
Sbjct: 677 WLDISERQQLLQELTQAKDEADKANRAKTTFLATMSHEIRTPMSAVLGMLELALKRADQG 736

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +      +E   +S+  LL L+ DILD+A +++G + L+     L  L+  V +    
Sbjct: 737 QFDRPS---IEVAYSSAQTLLELIGDILDIARIESGHLSLSPERANLRGLVEPVFRVFDG 793

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
              +  +R+++  D   G  V  D  R  QI S ++SNA+ F+ +G   V L       +
Sbjct: 794 LARQKGLRLELELDSHAGDDVLVDPLRFKQILSNLISNAIKFTQQGGVQVRLATGPSEPE 853

Query: 719 F---IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +   + +VK++G  I  D  + +F  F  V   H+  R G GLGL I  +   + GG ++
Sbjct: 854 YLALLLTVKDSG--IAADDLQQLFKPFSQVLGQHQDARSGTGLGLVICRTLCEMMGGTLT 911

Query: 774 ISS 776
           + S
Sbjct: 912 LHS 914


>gi|163939376|ref|YP_001644260.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163861573|gb|ABY42632.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 603

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 129/247 (52%), Gaps = 15/247 (6%)

Query: 543 VNVTDSVR----AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           VN+ D +     A   L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + ++   
Sbjct: 351 VNLKDRIDRLNVANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIQDGV 410

Query: 599 LGSLNSKQSQYVEYISASSTILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                SK + Y   +    T  +N L+ ++L+LA +++G  KL  ST  + +L+ +V   
Sbjct: 411 -----SKDTTYYTNVILEETDNMNRLIVEMLELAKLESGTYKLEMSTFSIGELIQQVYTK 465

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +   M E ++++ + +D  L  FV A+R R+ Q+   +LSNA+ ++  G  + +      
Sbjct: 466 LLFSMEEKHLQVDIHADSSL--FVKANRSRIEQVVVNLLSNAIRYTPDGEKIHVSIIETE 523

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSI 774
                 ++N G+ IPE+  + +++RF   +A R +   G GLGLSIV++ ++LH     +
Sbjct: 524 DTVKIKIENTGNPIPEESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGV 583

Query: 775 SSSDEGV 781
            ++   V
Sbjct: 584 YNTTNSV 590


>gi|253572834|ref|ZP_04850233.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251837566|gb|EES65658.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 713

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----TSKLGSL 602
           D +   + + ++NEAL  +   +   V  +++ELR+PLT I G+  L++    T K G+ 
Sbjct: 222 DLIERLQQMAKRNEALIAS---RKKAVHTITHELRTPLTAITGYAGLMRKDCNTDKTGT- 277

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                 Y+  I  SS  +  ++N +L+   +D G  + N+S   ++ + + ++       
Sbjct: 278 ------YIRNIQESSDRMREMLNTLLNFFRLDNGKEQPNFSACRISAITHTLETEFMPIA 331

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               + +  I   K      D++R+LQI + +LSNA+ F+  GS V L+A  DNG     
Sbjct: 332 INKGLTL-TIHCHKDAFVCTDKERILQIGNNLLSNAIKFTENGS-VSLRADYDNGLLKLI 389

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G+ + E+  + VF  F   ++   + G GLGLSIV+  + + GG + + S     +
Sbjct: 390 VEDTGTGMTEEEQQRVFGAFERLSNAAAKDGFGLGLSIVQRIVTMLGGTIRLESDKGKGS 449

Query: 783 TINCRIP 789
                IP
Sbjct: 450 RFTVEIP 456


>gi|239907809|ref|YP_002954550.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797675|dbj|BAH76664.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 660

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 135/284 (47%), Gaps = 20/284 (7%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKA 565
           R ++ G  E   ++  + SI P+ +A   + +V     ++T     E  L  + E    +
Sbjct: 208 RNAIVGYEERYGETCYQVSICPIADASGQVLYVASYSRDITTLKETEHQLRRERELAFSS 267

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K+ F+ ++++ELR+PL  I+G   L      G    ++ +  E +  S   LL++VN
Sbjct: 268 SQAKSQFLGNITHELRTPLNGIMGAAQLALQEAAG---GEERELWEIVEDSGKRLLSIVN 324

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           ++L+LA +DA  ++   +T  + ++L  + +S   +    +++     D ++    V D 
Sbjct: 325 NVLELADIDAAAIEPVLATFSMGEVLGSLSRSYGVRAKVRDVQFLTRLDPRIPERLVGDV 384

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNGDFIFSVKNNGSSIPEDMC 735
            RL QI S ++ NA+  +  G+  +         LK +      +F V++ G  I +++ 
Sbjct: 385 FRLRQILSNLVDNALKCTKNGTIEVRAKLIRSERLKFSAQYRTVLFMVRDTGIGIAKELQ 444

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +F  F    H   +R  G GLGLSI +  + L GG + + S+
Sbjct: 445 GKIFEDFELAEHYLTKRVSGAGLGLSIAKHLVQLLGGRIWVKSA 488


>gi|229189642|ref|ZP_04316657.1| hypothetical protein bcere0002_13200 [Bacillus cereus ATCC 10876]
 gi|228593906|gb|EEK51710.1| hypothetical protein bcere0002_13200 [Bacillus cereus ATCC 10876]
          Length = 604

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 141/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ + 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNID 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ IPE
Sbjct: 482 ADPSI-LVTANRSRIEQVVVNLLSNAIRYTPEGEKIQVSIIEAEDTVKVEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|187777128|ref|ZP_02993601.1| hypothetical protein CLOSPO_00673 [Clostridium sporogenes ATCC
           15579]
 gi|187774056|gb|EDU37858.1| hypothetical protein CLOSPO_00673 [Clostridium sporogenes ATCC
           15579]
          Length = 319

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 117/228 (51%), Gaps = 3/228 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+ ++ KN+ + ++S++LR+PLT+++GF +L++  K  + + + + Y E     +  L N
Sbjct: 93  RQWEKQKNNLITNLSHDLRTPLTSVVGFLELIQKKKYKN-DDELNHYCEVSLNKAKELKN 151

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            V+ + +   +    +KLN  +I L+ L+ +           + +  +V S         
Sbjct: 152 SVDQLFEFTKLSNSDVKLNICSISLHQLIEQAAIGFIPSFENSGMEYRVFSKDAGLIING 211

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR- 741
           D   L + F  I+SNA+ + S+G  + +   ++N   + S  N G  I E   K++F R 
Sbjct: 212 DATLLARAFENIISNAIKYGSEGKYLDIHIEKENNMAVVSFVNYGDIIEEKDVKNLFERL 271

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +     ++ G GLGL+IV++ ++LH G + I SS E  T    R+P
Sbjct: 272 YRTEKSCDKKEGTGLGLAIVKTIVDLHNGDIDIMSSKEK-TEFKIRLP 318


>gi|154499882|ref|ZP_02037920.1| hypothetical protein BACCAP_03539 [Bacteroides capillosus ATCC
           29799]
 gi|150271480|gb|EDM98737.1| hypothetical protein BACCAP_03539 [Bacteroides capillosus ATCC
           29799]
          Length = 435

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA E +  FV   S+EL++PLT I+  + +L + K  ++ + Q++++EYI   +  +  L
Sbjct: 198 KAWEQQRQFVADASHELKTPLTVILANSGILLSHKEDTV-AAQAKWIEYIQEEARRMKGL 256

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA- 682
           V D+L LA  DA  +      + +++L         +   E  + ++  SD + G +V+ 
Sbjct: 257 VEDMLFLAKSDAARLPTTRLPVDMSELTEGCLLPFESVAFEAGVNLE--SDIRPGLYVSG 314

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L ++   +L NA  ++    TV +  +R +     +V+N G +IP +  + +F RF
Sbjct: 315 DEGQLRRLVYILLDNACKYAGTDGTVSVTLSRPSDRLKLTVRNTGPAIPPEHLEHLFERF 374

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +A   +  G GLGL+I ++ +  H G +S++SS+   T     +P
Sbjct: 375 YRSDSARTREAGGYGLGLAIAKAIVQSHRGQISVTSSEAEGTVFTVLLP 423


>gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 925

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 12/244 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V +T+  R E  L E  +    + E K +F+ H+S+E+R+P+  I+G ++LL      
Sbjct: 379 VMVEITERKRMEEDLREARDRAESSSEAKMAFLSHMSHEIRTPMNAIVGLSELLLEE--- 435

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +  Q + +  I  +S  L+ L+ DILDL+ ++AG ++L++    L +    V   +  
Sbjct: 436 CPHDPQREQLRLIREASGSLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLGM 495

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           +     +     ++    G F+ D  RL Q+   ++ NA+ F+ +G  V + A  + G+ 
Sbjct: 496 EAKRKGLVFSWDVAPSAQGFFLGDSFRLRQVLWNLVGNAVKFTERGR-VHVTAWGEQGEG 554

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 F V++ G  I     + +F  F        RR  G GLGLSI    +   GG +
Sbjct: 555 GARKVHFRVQDTGIGILPVNLERIFEYFSQGETLLHRRFPGTGLGLSISRHLVRAMGGEI 614

Query: 773 SISS 776
            ++S
Sbjct: 615 LVAS 618


>gi|296271900|ref|YP_003654531.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096075|gb|ADG92025.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
          Length = 1420

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 122/243 (50%), Gaps = 10/243 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++VT++      L    +   KA+ +K+ F+ ++S+E+R+P++ + G   L+    L  L
Sbjct: 693 IDVTENHELLEELKGAKKNAEKANVVKSEFLANMSHEIRTPISGVTGLISLILDMPLEPL 752

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q  Y+     SS  LL+++NDILD + ++AG + +      L ++   +      + 
Sbjct: 753 ---QRDYLNKAKKSSNALLSIINDILDYSKIEAGKLDIIEQDFSLEEIFKNISNLFGYET 809

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI 720
           ++  +    + DG + S  + D  RL QI + ++ NA+ F+  G   +    ++ N D +
Sbjct: 810 YKKQLEFTFVLDGNIPSLIIGDSLRLTQILNNLVGNAIKFTENGYVALKSEIKEINEDVV 869

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F +++ G  I ++  K +FN F  +  +++ +  G GLGLSI +  I L  G + + 
Sbjct: 870 VLRFCIEDTGIGISKEGQKKLFNTFEQLDTSNKRKYSGSGLGLSITKQLIELMHGKIWLE 929

Query: 776 SSD 778
           S +
Sbjct: 930 SEE 932


>gi|262382136|ref|ZP_06075274.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262297313|gb|EEY85243.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 828

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 20/231 (8%)

Query: 562 LRKADEIKNSFVQH-------VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L KA ++  S ++        +S+++R+PL++IIG+ +LL        + +Q  Y+E + 
Sbjct: 323 LEKAKQVAESLLRSREKLMLTISHDIRAPLSSIIGYIELLLRRHP---DERQQYYLENMK 379

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR----IK 670
            SS  +L+LVND+LD   +++G M+++     +  L +E+  S         +R    +K
Sbjct: 380 GSSDHILSLVNDLLDFQRLESGEMEVHSVPFRVPVLFDEIYTSFQPIAEAKGLRFVLNLK 439

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNN 726
               G++  ++ D  R+ Q+   +LSNA+ F+  G  V+L    K +  +     +V ++
Sbjct: 440 PEETGQV--YMGDPIRIRQVVGNLLSNAIKFTEAGRVVLLVSLQKLSAVHYQLSITVSDS 497

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           G  IP++  + +F  F   A   +  G GLGLSI    ++L  G +++ S+
Sbjct: 498 GPGIPKEEQERIFGEFTRLADTEEAEGFGLGLSITRKLLSLMNGTLALDST 548


>gi|330862443|emb|CBX72601.1| hypothetical protein YEW_HP33960 [Yersinia enterocolitica W22703]
          Length = 733

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 118/238 (49%), Gaps = 9/238 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +   A  +A+  K+  +  +S+E+R+PL   +G  +LL+ + L     +Q Q  E  
Sbjct: 190 ALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGAVELLQNTPLA---PEQYQLAETA 246

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--V 671
              S  LL ++N++LD + +++G + L+     L  LL++   +I +++    I +   V
Sbjct: 247 RQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQAMLTIHSQVLNKPIALSTYV 306

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            SD  L     D QR+ QI   +L NA+ F+ +G  + L   R      F+V++ G  I 
Sbjct: 307 SSDVPL-EIELDSQRIKQILVNLLGNAVKFTRQGH-ISLTVERKGQQLCFTVEDTGCGID 364

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + +F  F+       R+G GLGL+I ++   + GG++++ S     +  +  +P
Sbjct: 365 SQHQEKIFRPFIQT--YDHRQGTGLGLTIADNLAKMMGGNITLYSKPNCGSHFSLTLP 420


>gi|295092339|emb|CBK78446.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 885

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 18/238 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+  K+ F+  +S+E+R+P+  IIG   ++    LG  +S+    +  I+ SS  LL L
Sbjct: 355 KANRAKSEFLSRMSHEIRTPMNGIIGMG-MIAMQNLGD-SSRVEDCIRKINLSSRHLLTL 412

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVA 682
           +N++LD++ +++G +++          L  V   I+ +  +  +   VI  G +      
Sbjct: 413 INEVLDMSKIESGRIEIKRDVFDFRLFLESVSNVISGQARDKGLNFDVIFLGDMEEELFG 472

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKS 737
           D  R+ QI   +LSNA+ F+ +G +++L+ A+ + D       F V + G  I E   + 
Sbjct: 473 DALRVNQILMNLLSNALKFTPEGGSIVLRIAKLDEDSTTVWLKFEVSDTGCGIEEKNYEK 532

Query: 738 VFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F      +S+ +     G GLGLSI   F  L  G +++SS     +T    +P
Sbjct: 533 IFMPFEQEHEDISHVY----GGTGLGLSISRRFAELMDGRLTVSSQVGKGSTFTLTMP 586


>gi|256839582|ref|ZP_05545091.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738512|gb|EEU51837.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 828

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 20/231 (8%)

Query: 562 LRKADEIKNSFVQH-------VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L KA ++  S ++        +S+++R+PL++IIG+ +LL        + +Q  Y+E + 
Sbjct: 323 LEKAKQVAESLLRSREKLMLTISHDIRAPLSSIIGYIELLLRRHP---DERQQYYLENMK 379

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR----IK 670
            SS  +L+LVND+LD   +++G M+++     +  L +E+  S         +R    +K
Sbjct: 380 GSSDHILSLVNDLLDFQRLESGEMEVHSVPFRVPALFDEIYTSFQPIAEAKGLRFVLNLK 439

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNN 726
               G++  ++ D  R+ Q+   +LSNA+ F+  G  V+L    K +  +     +V ++
Sbjct: 440 PEETGQV--YMGDPIRIRQVVGNLLSNAIKFTEAGRVVLLVFLQKLSAVHYQLSITVSDS 497

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           G  IP++  + +F  F   A   +  G GLGLSI    ++L  G +++ S+
Sbjct: 498 GPGIPKEEQERIFGEFTRLADTEEVEGFGLGLSITRKLLSLMNGTLALDST 548


>gi|153003908|ref|YP_001378233.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027481|gb|ABS25249.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 664

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 172/372 (46%), Gaps = 35/372 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFG--------P-DGRIKLSNPAFRSLWKTEENRL 474
           D E +Y TL     ETID   EG  +          P D R    NPAF         R 
Sbjct: 165 DSEERYRTLF----ETID---EGFCIVDVLFDEAGKPNDCRFVEVNPAFEQHTGLANAR- 216

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPL 533
             G  IR +       + E+     +  + T+ +  R S +   E LS     Y+  +  
Sbjct: 217 --GKRIRELVPQLDERWYEA-----YGRVATTGESIRFSHRA--EALSRDYDVYAFRVGA 267

Query: 534 PNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           P  + + + F +V++  RAE +L E N  LR++D  K+ F+  +S+ELR+PL  I     
Sbjct: 268 PEMRRVGVLFSDVSERKRAEESLREVNRQLRESDRRKSEFLAMLSHELRNPLAPIRNSIY 327

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   S  + +++  E +   +  L  L++D+LD+  +  G + L  S + L +++ 
Sbjct: 328 LLERAAADSEQATRAR--EVVRRQTEHLTRLIDDLLDVTRISHGKIPLERSRVDLREIVR 385

Query: 653 EVKQSIATKMHENNIRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +    + +   +  +R++V  ++ G +    AD  R+ Q+ + +L+N+M F+  G  V +
Sbjct: 386 KTTDDLYSVFTQGGVRLRVDHVTAGPMW-IEADSTRMAQVLTNLLNNSMKFTPSGGAVRV 444

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             A   G     V ++G  +     + +F  F    H   R   G+GLGL++V+S + LH
Sbjct: 445 SVAAREGGAELCVTDDGVGMDPKQIEHMFEPFAQADHSLARTKGGLGLGLALVKSIVELH 504

Query: 769 GGHVSISSSDEG 780
           GG V+  S   G
Sbjct: 505 GGTVAAHSDGPG 516


>gi|303242815|ref|ZP_07329281.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302589626|gb|EFL59408.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 718

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 121/250 (48%), Gaps = 10/250 (4%)

Query: 552 ERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKT-----SKLGSLN 603
           E+++ E    L++  E   +K  +  ++S+E R+PL+ ++    ++++       L    
Sbjct: 436 EKSVVENKRLLKEITEKHKMKTDYFTNLSHEFRTPLSIMLCTLKIMESFCKLEENLNDQK 495

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K +QY+  +  +S  L  + N+ L++A +D+G  +L      +  ++ +V  S+     
Sbjct: 496 EKMAQYIASVKTNSYRLFKIANNFLEIAKIDSGYGELKLKNYNIVSIVEKVTMSVWEYTR 555

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              I +   +D +      D  ++  I   +LSNA+ F+ +G  + +         + SV
Sbjct: 556 NRRISLMFDTDTEEIILACDIDKIEMIVLNLLSNAIKFTREGGQIEVNIFNHKQHVLISV 615

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IPED    +F RF  V N+      G+G+GLS+V++ + +HGG++ + SS    
Sbjct: 616 SDTGIGIPEDKLDLIFERFKQVDNSLAKDYEGIGVGLSLVKALVEMHGGNIEVESSLGVG 675

Query: 782 TTINCRIPSK 791
           +T    +P +
Sbjct: 676 STFKVLLPKR 685


>gi|238785704|ref|ZP_04629679.1| Sensor kinase protein rcsC [Yersinia bercovieri ATCC 43970]
 gi|238713389|gb|EEQ05426.1| Sensor kinase protein rcsC [Yersinia bercovieri ATCC 43970]
          Length = 965

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 128/253 (50%), Gaps = 9/253 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L 
Sbjct: 453 VLVDVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELP 512

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +   
Sbjct: 513 ---HGVDRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHISANYLP 569

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  + +    + ++    + D  RL Q+ S +L+NA+ F+  G  ++    R  GD+
Sbjct: 570 LVVKKRLGLYCFIEPEVPRVMMGDPVRLQQVISNLLNNAIKFTDTGCIIL--QVRVRGDY 627

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           + F V++ G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S
Sbjct: 628 LEFRVRDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVIS 687

Query: 777 SDEGVTTINCRIP 789
                +    RIP
Sbjct: 688 ELGMGSIFAIRIP 700


>gi|167765081|ref|ZP_02437194.1| hypothetical protein BACSTE_03467 [Bacteroides stercoris ATCC
           43183]
 gi|167696709|gb|EDS13288.1| hypothetical protein BACSTE_03467 [Bacteroides stercoris ATCC
           43183]
          Length = 868

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 12/235 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  A   K  F  +VS++ R+PLT I    + L   +  S++ +  Q +E +  +  ILL
Sbjct: 356 LEAATHAKLVFFTNVSHDFRTPLTLISDPVEQLLADR--SISGQSHQLLELMKKNVHILL 413

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRIKV-ISDGKL 677
            LVN ILD   V+ G M+L+       DLL   K    S    + + +I      + G  
Sbjct: 414 RLVNQILDFRKVENGRMELHLEPF---DLLESFKGWNDSFRMALLKKHIAFSFEPASGVD 470

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              +AD  ++ +I+  +LSNA+ ++ +   ++++   ++  F  SV N+GS I     ++
Sbjct: 471 YRMLADAGKMERIYFNLLSNAVKYTQENGKIVVRLEAEDNHFRLSVFNSGSYISTTDVEA 530

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F RF      G + G G+GL++V +F+ +HGG++   S+++G TT    +P ++
Sbjct: 531 IFERFYQVD--GHQAGTGIGLALVRAFVEMHGGNIMAHSNEKG-TTFTVILPKRD 582


>gi|160947610|ref|ZP_02094777.1| hypothetical protein PEPMIC_01545 [Parvimonas micra ATCC 33270]
 gi|158446744|gb|EDP23739.1| hypothetical protein PEPMIC_01545 [Parvimonas micra ATCC 33270]
          Length = 492

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 13/235 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L K +++K  F+  VS+ELR+PLT I G+   L+    G  N      +  I   S  
Sbjct: 256 ENLVKKEQLKKDFISSVSHELRTPLTVIKGWAFTLQPEAKG--NKLLEDGLSIIEKESDR 313

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLG 678
           L N+V ++LD + + +G + +N     LN+L   + + +  K     I + +  D  K  
Sbjct: 314 LGNMVTELLDFSEISSGRLIMNKELFDLNELGIFINKQLMPKSSSKKIDMILNYDETKRV 373

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             +ADR R+ Q+F  IL NA+ F+ +G  V+     +    I  V +NG  I ED    V
Sbjct: 374 MVMADRDRIKQVFINILDNALKFTDEGGVVLTDIKIEEDKAIIEVIDNGCGISEDEISLV 433

Query: 739 FNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F     SN+H       GLGLSI E  +  H G++ I S  E  T +   +P
Sbjct: 434 TGKFYKGTNSNSH------TGLGLSICEEIVKAHNGNLIIRSVLEKGTVVRVELP 482


>gi|145596614|ref|YP_001160911.1| ATPase domain-containing protein [Salinispora tropica CNB-440]
 gi|145305951|gb|ABP56533.1| ATP-binding region, ATPase domain protein domain protein
           [Salinispora tropica CNB-440]
          Length = 1179

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 16/242 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L E  + L +A   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ 
Sbjct: 750 ARLGLEETAQQLTRASAYKSEFLANMSHELRTPLNSLLLLARLLVQNPEQNLSPKQIEFA 809

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  + T LL+L++DILDL+ ++AG   +  + I   ++   V+Q+ A +  E  +  +
Sbjct: 810 RTIHNAGTDLLSLIDDILDLSKIEAGRTDVEPTEIQFTEIRGYVEQAFAPQAEEKGLDFE 869

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF--------- 719
           V IS       V D Q L QI   +LSNAM F+  G+  + +  A ++  F         
Sbjct: 870 VRISPELPKEIVTDVQLLQQILRNLLSNAMKFTDAGAVRLGIAPASESAVFDVPALTNAR 929

Query: 720 ---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F+V + G  I +D    +F  F        RR  G GLGLSI      L GG + +
Sbjct: 930 QVVAFTVVDTGIGISDDKLSIIFEAFQQADGTTSRRYGGTGLGLSISRDLARLLGGAIGV 989

Query: 775 SS 776
           SS
Sbjct: 990 SS 991


>gi|70730352|ref|YP_260091.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68344651|gb|AAY92257.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1059

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 11/247 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++    E  + +  +   +A + K+ F+  +S+E+R+PL  IIG   L     L  + 
Sbjct: 447 DISERKAVEAQIQQSRQDAERATQAKSEFLDCMSHEIRTPLNAIIGMAHLALDLPLEPV- 505

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  Y+E I  ++  L+  +N +LDL+ ++AG + +      L +L+++V   +  +  
Sbjct: 506 --QRDYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRELVDDVLLLVRQRAE 563

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           E  +R+++     L   +V D  RL Q+ + ++ NA+ F+  G   I    ++       
Sbjct: 564 EKALRLQLDIPASLPHRYVGDPLRLAQVLTNLVDNAIKFTEAGHVCIGVYLVRQWDHQAL 623

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-S 775
             FSV + G  I ++    +FN FV       RR  G GLGL+I +  + L  G + + S
Sbjct: 624 LCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISKKIVQLMQGDIRVKS 683

Query: 776 SSDEGVT 782
              +G T
Sbjct: 684 QPGQGAT 690


>gi|298247031|ref|ZP_06970836.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297549690|gb|EFH83556.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 484

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 124/248 (50%), Gaps = 15/248 (6%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-- 597
           L      + VR E+A  E+ E  R+        + +VS+ELR+P+ +I    ++L  +  
Sbjct: 225 LRVAQAEEQVRREQAKAERAELSRQ------QLIVNVSHELRTPVASIRAHLEVLLKACA 278

Query: 598 ---KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L     + S Y+      +  L +LV D+L L+  +A  ++LN +++   +++ EV
Sbjct: 279 HDDGLVLQPQELSNYLGIAHRETVRLSSLVEDLLSLSRTEADKLRLNMASVPPGEVIEEV 338

Query: 655 KQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q++     +  +   V S   +L    AD QRL Q+   ++ NA+ ++  G  + +   
Sbjct: 339 YQALLPLARKERMITLVHSLPERLPRVQADHQRLTQVLMNLVRNAITYTPNGGIISISTR 398

Query: 714 RDNGDF-IFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGG 770
           +++ D+ + SV + G  IP D    +F RF  ++A R +   G GLGLSIV+  ++  GG
Sbjct: 399 QEHSDYLVISVADTGMGIPADQLAQIFERFYRTDASRSRSSGGFGLGLSIVKDLVDAMGG 458

Query: 771 HVSISSSD 778
            +++ S +
Sbjct: 459 KITVESQE 466


>gi|269963086|ref|ZP_06177422.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832218|gb|EEZ86341.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 481

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 134/272 (49%), Gaps = 20/272 (7%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I +   + +   V V  S      L +  E   +A++ K+ F+  +S+E+R+PL
Sbjct: 81  LIERAVIDIETKEKLQRIVEVRTS-----QLAKAREEAERANQSKSEFLAMMSHEIRTPL 135

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+L+ S   +L   QS+ +  +  S+ +LL +++DILDL+ +++G   LN   
Sbjct: 136 NSVLGMLDILRQS---TLTEDQSEVLNQMERSADLLLAIISDILDLSKIESGSFHLNEQW 192

Query: 645 IVLND----LLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
             L+D    ++++ KQ    K    N+  +   +  K   +  D  RL QI   ++ NA 
Sbjct: 193 TDLSDAVTLIISQQKQVATAK----NLSFEFDCNLDKNKQYWIDSTRLSQILFNLIGNAS 248

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G   I    +D+ + + SV + G  IP+     +F  F        RR  G GLG
Sbjct: 249 KFTDFGGIDISVIEKDS-ELVISVADTGIGIPKAKVGHLFTAFHQGDSSITRRFGGTGLG 307

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  + +  G +S+ S +   +    RIP
Sbjct: 308 LAITKHLVEMMRGTISVKSEENVGSHFKIRIP 339


>gi|261377987|ref|ZP_05982560.1| putative sensor histidine kinase CpxA [Neisseria cinerea ATCC
           14685]
 gi|269145858|gb|EEZ72276.1| putative sensor histidine kinase CpxA [Neisseria cinerea ATCC
           14685]
          Length = 468

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 14/219 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L K    +   + HVS+E+RSPL  +     L++         KQ QY++ +    T 
Sbjct: 228 EKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQP-----QKQEQYLKRLEGELTR 282

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGK 676
           +  LV ++L L+ ++   M L    + L   L+   E  QSIA K   N   + + +DGK
Sbjct: 283 MDTLVGELLTLSRLETSNMALEKEKLKLLPFLSNLVEDNQSIAQK---NGQTVTLSADGK 339

Query: 677 L---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +    +  A+   L + F  ++ NA+++S +GST+++   +D+  +I  V +NG  + E 
Sbjct: 340 IPENATLYANESYLYRAFDNVIRNAVNYSPEGSTILINIGQDHKHWIIDVTDNGPGVDEM 399

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
               +F  F        + G GLGL++ +  I  H G +
Sbjct: 400 QLPHIFTAFYRADSSANKPGTGLGLALTQHIIGQHCGKI 438


>gi|153870045|ref|ZP_01999526.1| two-component system sensor histidine kinase/response regulator
            [Beggiatoa sp. PS]
 gi|152073490|gb|EDN70475.1| two-component system sensor histidine kinase/response regulator
            [Beggiatoa sp. PS]
          Length = 1258

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 123/259 (47%), Gaps = 33/259 (12%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             ++ + L    E    A+  K++F+  +S+ELR+PL  I+GF  ++  S   +L ++   
Sbjct: 754  AQSYQQLETAKEKAEVANRAKSTFLASMSHELRTPLNAILGFAQIMHRSS--TLPTEHRD 811

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             +  I+ S   LL+L+ND+LD++ ++AG + L+     L  LL+E+      K     ++
Sbjct: 812  NLNIINRSGNYLLSLINDVLDMSKIEAGKITLDEQNFDLYRLLDEIYDLFYLKAESKQLQ 871

Query: 669  IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------------------ 709
            ++V     L  ++  D ++L Q+   ++SNA+ F+  G   +                  
Sbjct: 872  LQVERSDHLPRYIRTDGKKLRQVIINLISNALKFTQDGGVSLYADKIASNTSGEVPPPSG 931

Query: 710  --LKAARD-NGDFI--------FSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLG 757
              L+  ++ +G+ +        FSV + G+ + ++    +F  F   A  R  + G GLG
Sbjct: 932  RRLRGGKNPDGEDVNTEITTLHFSVADTGAGVAQEEMDKLFEAFSQTATGRASQEGSGLG 991

Query: 758  LSIVESFINLHGGHVSISS 776
            L I   F  L GG++ + S
Sbjct: 992  LPISRQFTQLMGGNIQVRS 1010


>gi|332142241|ref|YP_004427979.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552263|gb|AEA98981.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 1070

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 9/221 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LRKA + K+ F+  +S+E+R+PL  IIG T   K S+  + + +Q   +  I  +S  LL
Sbjct: 427 LRKATKAKSDFLARMSHEIRTPLNAIIGLT---KLSQRAAEDKEQQTNLIQIEGASQTLL 483

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSF 680
           +++NDILD + ++AG + +  +   L+ L+N+  +    +  E +I  I+ IS     + 
Sbjct: 484 SIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLARAQEKHIELIQHISRDVPLNL 543

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           + D  R+ Q+ + +LSNA+ F+  G    +V  +   ++    F VK++G  +       
Sbjct: 544 IGDPLRIQQVLNNLLSNALKFTEDGLISVSVRCEQVSEDIQLEFEVKDSGVGLSSAHQAL 603

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           +F  F        RR  G GLGL+I +    L GG + + S
Sbjct: 604 LFQPFNQGDETISRRYGGTGLGLAICKQLTALMGGEIWVES 644


>gi|329934628|ref|ZP_08284669.1| Two-component hybrid sensor and regulator [Streptomyces
            griseoaurantiacus M045]
 gi|329305450|gb|EGG49306.1| Two-component hybrid sensor and regulator [Streptomyces
            griseoaurantiacus M045]
          Length = 1271

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 122/277 (44%), Gaps = 38/277 (13%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R+  AL EK   L  + + K+ F+ ++S+ELR+PL +++    LL  +  G L  ++  +
Sbjct: 760  RSNAALEEKASLLATSSQYKSEFLANMSHELRTPLNSLLILARLLADNPDGHLTDQEVHF 819

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V         +  +  
Sbjct: 820  AQTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKRLPLMKLLDYVHAVFRPLTLDRGLAF 879

Query: 670  KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------DNGD-- 718
            ++ + +G      +D QRL QI   +LSNA+ F++ G  V L+  R         +GD  
Sbjct: 880  EIAVGEGVPREMFSDEQRLQQILRNLLSNAIKFTASGR-VELRVNRVHDPEHRPADGDET 938

Query: 719  ------------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
                                      F+V + G  I  +    +F  F        R+  
Sbjct: 939  GSASGSGSGSGSGSASASASGEGVIAFAVSDTGIGIAPEKLPVIFEAFQQADGTTHRKYG 998

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGLSI      L GG ++ +S     +T    +P
Sbjct: 999  GTGLGLSISREIAGLLGGRITAASRPGKGSTFTLYVP 1035


>gi|302875025|ref|YP_003843658.1| histidine kinase [Clostridium cellulovorans 743B]
 gi|302577882|gb|ADL51894.1| histidine kinase [Clostridium cellulovorans 743B]
          Length = 1034

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 134/262 (51%), Gaps = 11/262 (4%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            N +T+L    + + ++  + L +K   L K +  KN++  ++S+ELR+PL  I+    L+
Sbjct: 772  NQRTIL----LNNKLKENKTLYDK---LIKYERSKNNYFINLSHELRTPLNVILSTLQLI 824

Query: 595  KTSKLGSLNSKQ---SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
                 G    ++   ++YV+ +S +S  LL ++ND++D + ++ G  KL  S + +  L+
Sbjct: 825  SNLNEGEKYIEKPNLNKYVDIMSRNSLRLLKVINDLIDASKIENGDYKLTISEVDIVYLV 884

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             EV  S+   +  NNI + +  D +      DR ++ +    +LSNA  +S+K  ++ + 
Sbjct: 885  EEVALSMKDYIESNNIDLIIDPDIEEKLIECDRTQIERCIVNLLSNATKYSNKNGSIWVT 944

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGG 770
               D+     S+K+NG  I       +F RF   N     ++G G+GLS+V+S + LH G
Sbjct: 945  ILDDDTKVRISIKDNGIGIAPKNHDIIFERFGQVNNSESNKKGSGIGLSLVKSLVELHNG 1004

Query: 771  HVSISSSDEGVTTINCRIPSKE 792
             + + S +   +     +P ++
Sbjct: 1005 TIDLISEEGKGSDFIISLPVRQ 1026


>gi|294634692|ref|ZP_06713224.1| sensor histidine kinase/response regulator [Edwardsiella tarda ATCC
           23685]
 gi|291091868|gb|EFE24429.1| sensor histidine kinase/response regulator [Edwardsiella tarda ATCC
           23685]
          Length = 778

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 123/247 (49%), Gaps = 14/247 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   LN +Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LNDEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     L +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQEIDFTGFLTDLENLSGLLVQPKGLNF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNG 727
            +  +  L    +AD  RL QI   ++ NA+ F+ +G  V ++  R+  D   F V++ G
Sbjct: 381 TLTPEAGLPHKIMADGTRLRQILWNLIGNAVKFTQQGG-VSVRVWREPSDKLFFEVRDTG 439

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS-SDEGVT- 782
             IP D    +F  +     R   +   G G+GL++ +      GG + +SS + EG   
Sbjct: 440 IGIPRDEQDKIFAMYYQVKDRNGGKPATGTGIGLAVSKRLAQAMGGDIVVSSVAGEGACF 499

Query: 783 TINCRIP 789
           T++ R P
Sbjct: 500 TLSIRAP 506


>gi|195939410|ref|ZP_03084792.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4024]
          Length = 472

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 115/213 (53%), Gaps = 12/213 (5%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++   L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE---LTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   A +  +  +R 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRF 380

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
            +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D GD + F V+++G
Sbjct: 381 NLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQ-VTVRVRYDEGDMLHFEVEDSG 439

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLG 757
             IP+D    +F  +  V ++H G+   G G+G
Sbjct: 440 IGIPQDELDKIFAMYYQVKDSHGGKPATGTGIG 472


>gi|310828980|ref|YP_003961337.1| hypothetical protein ELI_3415 [Eubacterium limosum KIST612]
 gi|308740714|gb|ADO38374.1| hypothetical protein ELI_3415 [Eubacterium limosum KIST612]
          Length = 1195

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 10/213 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  IIG +  +    LG  + + ++ +  I  SS  LL+L+NDILD++
Sbjct: 680 FLSRMSHEIRTPMNAIIGMS-AIAAQALGD-DERVAECISKIGISSRFLLSLINDILDMS 737

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQI 690
            +++  M L    I   D +N +     ++     +  + I D  L  F + D  +L Q+
Sbjct: 738 RIESRKMLLKNEKIPTEDFINGLNAICYSQAATKGVEYECIVDPTLDDFYIGDAMKLQQV 797

Query: 691 FSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-- 743
              ILSNA+ F+ +G  V   AA     ++     F V + G  I +     +F  F   
Sbjct: 798 LLNILSNAIKFTGEGGKVTFSAALHRKSKNGATLRFIVNDTGVGISDSFLIHLFEPFSQE 857

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           S     Q  G GLGLSI ++ I++ GG +++ S
Sbjct: 858 SIGTTAQYGGSGLGLSISKNIIDMMGGKITVRS 890


>gi|310828525|ref|YP_003960882.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612]
 gi|308740259|gb|ADO37919.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612]
          Length = 913

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 123/240 (51%), Gaps = 27/240 (11%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-----KLGSLNSKQSQ 608
           AL +  +A+R A+  K  F+  +S+++R+P+  I+G T + + +     K+G   +K   
Sbjct: 389 ALEDAYQAVRVANSAKTDFLSSMSHDIRTPMNAIMGMTAIARVNLESPEKVGDCLNK--- 445

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHE 664
               I+ SS  LL+L+N++LD++ +++G + L++    L +L+ E     K  +  K H+
Sbjct: 446 ----INVSSRHLLSLINEVLDMSKIESGKLDLSFEAAELPELIQEASDMCKALLTEKKHD 501

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGD 718
             + +  +   K+   + D  RL Q+F  +LSNA+ ++ +G  + L            G 
Sbjct: 502 FRVIVGQVQHEKV---ITDGDRLQQVFLNLLSNAIKYTPEGGKITLLINEKPSIIPKKGQ 558

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + F   +NG  + ++    +F  F    ++   + +G GLG++I E+ +++  G + + S
Sbjct: 559 YEFIFTDNGIGMEQEFLTQIFEPFSRAEDSRISKVQGTGLGMAITENIVHMMNGTIDVKS 618


>gi|307822326|ref|ZP_07652558.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307736892|gb|EFO07737.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 1187

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 120/221 (54%), Gaps = 13/221 (5%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K++F+ ++S+E+R+P+  IIG T LL+ +   +  S+QS  ++ I A++  LL+++
Sbjct: 582 ANQSKSAFLANMSHEIRTPMNAIIGLTYLLRQN---TPTSEQSVRLDKIDAAALHLLSII 638

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILDL+ ++AG ++L  +   L  +L+ +   I  +     + I+ + +G +  ++  D
Sbjct: 639 NDILDLSKIEAGRLELEQTDFSLAAVLDHISSLITDQSRAKGLTIE-MDNGDVPLWLRGD 697

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFI-FSVKNNGSSIPEDMCKSV 738
             RL Q       NA+ F+ +G T+ L+A      D G  + F V++ G  I  +   ++
Sbjct: 698 PTRLRQAMLNYAGNAVKFTERG-TIWLRARLLKETDAGLLVRFEVQDTGIGIAAENLPTL 756

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F  F        R+  G GLGL+I     N+ GG V + S+
Sbjct: 757 FEVFAQADISTTRKYGGTGLGLAITRRLANIMGGEVGVESA 797


>gi|303327577|ref|ZP_07358018.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862517|gb|EFL85450.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 780

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 10/219 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+++R+PL  I+G  D+  T +L        + ++ I AS   LLNL+N++L
Sbjct: 276 KTDFLSQMSHDIRTPLNAILGMADIAGT-RLDDPRGA-GECLKKIQASGRHLLNLINEVL 333

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ +++G M+L    + L +L+  V     + + E    + V ++        D  RL 
Sbjct: 334 DMSKIESGQMRLAAEDMELAELVRNVLDVCGSLLKEKGHVLTVRANVAHERVRGDSGRLQ 393

Query: 689 QIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           Q+F+ +LSNA  ++  G ++            D G F   + +NG  + ED  K +F  F
Sbjct: 394 QLFTNLLSNAAKYTPAGGSIAFSIDELPSLNTDVGLFECVIADNGIGMSEDFVKHLFEPF 453

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
               +    + +G GLGL I  S + L GG + + S  E
Sbjct: 454 KRADDPRICKIQGTGLGLVISRSIVRLMGGGIKVESRPE 492


>gi|153875770|ref|ZP_02003419.1| histidine kinase [Beggiatoa sp. PS]
 gi|152067766|gb|EDN66581.1| histidine kinase [Beggiatoa sp. PS]
          Length = 314

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 13/205 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+ A+  K + L  A + K+ F+ ++S+ELR+PL +++    LL ++K  +L  +Q +Y 
Sbjct: 95  AKAAIETKAKELEIASQYKSEFLANMSHELRTPLNSLLILAQLLASNKQENLTEQQIEYA 154

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I ++   LL L+N+ILDL+ ++AG M++N     L+DL+  +         E ++  +
Sbjct: 155 KTIHSAGADLLELINEILDLSKIEAGKMEVNIEQFSLSDLVETIGNKFQPLTSEKSLDFQ 214

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---------- 718
           +     L   +  D+QRL QI + +LSNA  F+ +G+ T+ ++   DN D          
Sbjct: 215 IRMTEDLPPILETDQQRLKQILNNLLSNAFKFTEQGNITLGIRQIADNEDIGLVGVDLTN 274

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRF 742
               SV + G  IP+   + +F  F
Sbjct: 275 AIAISVTDTGIGIPKHKQQIIFEAF 299


>gi|331270597|ref|YP_004397089.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329127147|gb|AEB77092.1| two-component sensor histidine kinase, putative [Clostridium
           botulinum BKT015925]
          Length = 463

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYISA 615
           +E L K +++K  F+  VS+ELR+PLT+I G+T  L    L   N+K S++   ++ I  
Sbjct: 232 SEELLKTEKLKTEFIASVSHELRTPLTSIKGWTIALS---LCDPNNK-SEFEDGLKIIEE 287

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L +LV ++LD + + +G + L    + + +LL  +++ ++ +  ++NI I +    
Sbjct: 288 ETDRLSSLVEELLDFSKLSSGKITLKKDFVNIYELLIYLQKQLSPRASKDNINILLECKS 347

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPED 733
            +     D  RL Q+   IL N++ F+S G  +  IL +  D+   I ++K+NG  IP +
Sbjct: 348 TIPDIYVDVNRLKQVLMNILDNSLKFTSNGGEIKTILSSTMDH--VIITIKDNGCGIPPE 405

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               V  +F    +   + G+  GLSI    I+LH G + I S +   T +   +P
Sbjct: 406 DLPRVTEKFYKGKNSNSKNGI--GLSICSEIISLHNGTLKILSEEHNGTEVIITLP 459


>gi|315283630|ref|ZP_07871770.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
 gi|313612735|gb|EFR86737.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
          Length = 591

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 115/235 (48%), Gaps = 8/235 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           +R  + +++ FV +VS+EL++P+T + GF + L     G++  +    +++  I   S  
Sbjct: 359 IRHLENVRSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLKKFLTIIKEESDR 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ DIL L+ ++   +  N   + ++D++ +  ++I     E NI++ +        
Sbjct: 416 LHRLIMDILALSRIEQNPVPENIEIVDMDDVIEQSARTIFEMATEKNIQVTIPEKTSTPV 475

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            +  DR +L QI   +LSNA++++     V +K      + I  V +NG  IP      V
Sbjct: 476 TIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIDHEAEVIIEVTDNGIGIPAKDIDRV 535

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF  V  A      G GLGLSIV+  +   GG + + S +E  +T    +  K
Sbjct: 536 FERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLSKK 590


>gi|308068584|ref|YP_003870189.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857863|gb|ADM69651.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 571

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 133/229 (58%), Gaps = 13/229 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           K EA+R A+++K++F+  VS+E R+P+  I+G  ++L +SK   L+  Q Q +  I  S+
Sbjct: 61  KEEAVR-ANDLKSTFLAVVSHEFRTPMNGILGMIEMLGSSK---LSPDQRQAIGVIRESA 116

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           ++LLN++N++LD++ V+AG M+L    + +  +++ V Q +  ++++   R+ + +D  +
Sbjct: 117 SLLLNMINNLLDISKVEAGQMELEIGNVRVQAIMSHVAQLLEPQIYQMGNRLSIETDTDV 176

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSI-P 731
              +  D  R++QI   +L+NA  F+S+G     T +++  +D+    F V+++G  I P
Sbjct: 177 AEHLEGDSARIMQILLNLLNNANKFTSEGLLNIRTKLVEETKDSQRVRFEVQDSGIGISP 236

Query: 732 EDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           ED  K +F  +V        Q  G GLGL I  SF+ L  G + I S +
Sbjct: 237 EDQNK-LFQPYVQAGEGSTSQYGGTGLGLWICSSFVELMQGEIGIVSEE 284


>gi|296104922|ref|YP_003615068.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059381|gb|ADF64119.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 777

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 138/257 (53%), Gaps = 32/257 (12%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL +A   K +F+  +S+ELR+PL  I+G + +L  +    L ++Q +Y
Sbjct: 264 RDITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT---DLTAEQEKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLN----EVKQSIATK 661
           ++ I  S+  L N+ NDI+D+  ++   ++L+   +     L DL N    + +Q   + 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSGLQAQQKGLSF 380

Query: 662 MHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           + E  + +  KV++DG          RL QI   ++SNA+ F+ +G  V ++   D GD 
Sbjct: 381 VMEPTLPLPHKVVTDGT---------RLRQILWNLISNAVKFTQQGQ-VAVRIRYDEGDM 430

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
           + F V+++G  IP++    +F  +  V +++ G+   G G+GL++ +      GG ++++
Sbjct: 431 LHFEVEDSGIGIPQEEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKSMGGDITVA 490

Query: 776 S-SDEGVT-TINCRIPS 790
           S + +G T T+    P+
Sbjct: 491 SQAGKGSTFTLTVHAPA 507


>gi|283851683|ref|ZP_06368962.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573013|gb|EFC20994.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 838

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 17/244 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------TSKLGSLNSKQ-------SQ 608
           ++ D +K  F+  VS+ELR+PLT+++GF  +++          L   + +         +
Sbjct: 369 KEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFADLVAPALAEADPRTWRGAQQIRE 428

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I A    L  LV+D+LD+A +++G  + N + + L ++ +   ++         + 
Sbjct: 429 NLDIIVAEGERLTELVDDVLDIAKMESGRCEWNMAALSLAEVADHAVKAATPLAARKGLV 488

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +       L   + DR RL+Q+F  ++ NA+ F++ G  V ++AA D  + + +V++ G 
Sbjct: 489 LANQVPPTLPLVLGDRDRLVQVFLNLIGNAVKFTATGR-VDVEAALDGPEILVTVRDTGP 547

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I     + +F +F    +    + +G GLGL I    +  HGG +   S     +    
Sbjct: 548 GIAAGDLERIFEKFKQAGDTLTEKPKGTGLGLPICRQIVERHGGRIWAESEGGAGSAFRF 607

Query: 787 RIPS 790
            +P+
Sbjct: 608 TLPA 611


>gi|255263744|ref|ZP_05343086.1| hybrid signal transduction histidine kinase J [Thalassiobium sp.
           R2A62]
 gi|255106079|gb|EET48753.1| hybrid signal transduction histidine kinase J [Thalassiobium sp.
           R2A62]
          Length = 577

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 124/230 (53%), Gaps = 14/230 (6%)

Query: 557 EKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           E  EALR+A+   + K+ FV  +S+E+R+PL  ++G  DLL    +   ++ + +++ Y 
Sbjct: 62  ELEEALRQAEAAGKAKSRFVATMSHEIRTPLGGMLGMIDLLA---MDENDASKLEFLSYA 118

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ-SIAT-KMHENNIRIKV 671
           + +   L  +VND+LD + ++AG+  +    + +  L+  V+  +++T K  +  I  K+
Sbjct: 119 ALAGKGLSRIVNDVLDFSKMEAGVFVIKEEGVDVRALVESVRMLAVSTDKPADRTIVAKI 178

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFI-FSVKNNGS 728
            +D     F+ D  R+ Q+ S ++SNA+ +S  G  +I  +A D+  G  +   +++ G 
Sbjct: 179 TADVP-HLFLGDGTRIRQVISNLVSNAVRYSEDGPVLIRASASDHKKGALLRVEIEDFGV 237

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I ED   ++F  F  +SN      +G GLGL+I +  +   GG + + S
Sbjct: 238 GIAEDSIPNIFKDFSQISNPLTAAAQGSGLGLAICKRILEGCGGTMGVES 287


>gi|229084388|ref|ZP_04216668.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
 gi|228698928|gb|EEL51633.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
          Length = 441

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 120/245 (48%), Gaps = 5/245 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +A  +   +L   D  +  F+ +VS+ELR+PL+ I G+++ +      +   +QS++
Sbjct: 195 RLGKAFNKMAHSLETEDAKRKEFLANVSHELRTPLSYIKGYSEAILDGV--AKGEQQSKF 252

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I   +  +  LV+D+LDLA ++     L    IV   L+ +V ++   K  E  +RI
Sbjct: 253 MQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFAQLIEDVLETYELKWTEKQLRI 312

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               D  +   + D  R+ Q+   +L NA+ ++++  ++ ++  + +      +++ G  
Sbjct: 313 SKDLDPDIIVMI-DEDRMQQVLHNLLDNAIRYTNQNGSIAIRLEKKDNSCELRIEDTGIG 371

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +  RF  V  A   Q  G GLGL+IV+  + +H G   + S     TT+   
Sbjct: 372 IDSEHLEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVYIHEGEWQVESEKGKGTTVIIT 431

Query: 788 IPSKE 792
           +  KE
Sbjct: 432 LYMKE 436


>gi|167746502|ref|ZP_02418629.1| hypothetical protein ANACAC_01212 [Anaerostipes caccae DSM 14662]
 gi|167653462|gb|EDR97591.1| hypothetical protein ANACAC_01212 [Anaerostipes caccae DSM 14662]
          Length = 635

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 135/258 (52%), Gaps = 26/258 (10%)

Query: 551 AERALTEKNEA------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           AE    EKN A        KA+  K+ F+  +S+E+R+P+  IIG T L+    L + ++
Sbjct: 102 AELLAAEKNRAEEAFKHAEKANLAKSEFLSRMSHEIRTPMNGIIGMT-LIAGQNLQN-SA 159

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN---YSTIVLNDLLNEV--KQSIA 659
           K S  ++ IS SS  LL L+ND+LD++ +++G +++    +   V  + L  V   Q+++
Sbjct: 160 KISDCLKKISLSSKHLLALINDVLDMSKIESGKIEIKNEVFDFKVFIESLTTVYYAQAVS 219

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNG 717
            K++ + I I  + +      + D  RL QI + +LSNA+ F+ +G  V L+    R+  
Sbjct: 220 KKLNFDTILIGEVRE----ELIGDSLRLNQIITNLLSNAIKFTPEGGNVTLRIQELREED 275

Query: 718 D---FIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           +   F F V++ G  + PE+M K +FN F        ++  G GLGLSI   F +L GG 
Sbjct: 276 ELVWFRFQVEDTGCGVAPENMEK-IFNAFEQETSDVAQKYGGTGLGLSISRRFASLMGGS 334

Query: 772 VSISSSDEGVTTINCRIP 789
           + ++S     +     IP
Sbjct: 335 LILNSEVGKGSVFTADIP 352


>gi|161507257|ref|YP_001577211.1| histidine kinase [Lactobacillus helveticus DPC 4571]
 gi|160348246|gb|ABX26920.1| Histidine kinase [Lactobacillus helveticus DPC 4571]
          Length = 485

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + NE +R  +  ++ F+   ++E+R+PLT I G  + L+   +   +  +S  ++ 
Sbjct: 238 KALKQSNEEVRAQENRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKS--IDL 295

Query: 613 ISASSTILLNLVNDILDLATVDAG---IMKLNYSTI-VLNDLLNEVKQSIATKMHENNIR 668
           +   +  L+ LVN+ LD   +      ++K ++  + +L DL +++KQ+      + N  
Sbjct: 296 MQRETKRLVRLVNENLDYEKIRNNQIMLIKTDFDAMPILRDLKSQLKQNAG----KANDE 351

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I V    KL  + ADR R  Q+   ++ NA+ F+  G   I     ++   IF VK+NG 
Sbjct: 352 ISVTGPEKLPIY-ADRDRFTQVMVNLVQNAIQFTHDGQIEISGKRLEHASEIF-VKDNGI 409

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISS 776
            + +D  K +F RF        R G    GLGL+IV S I  HGG V + S
Sbjct: 410 GMSKDQTKYIFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVKVDS 460


>gi|331083979|ref|ZP_08333086.1| hypothetical protein HMPREF0992_02010 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402341|gb|EGG81911.1| hypothetical protein HMPREF0992_02010 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 399

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 125/250 (50%), Gaps = 9/250 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T  V+ +  +  K + L+   + KN  + +++++L++PLT+++G+ +LL+ +    L ++
Sbjct: 155 TQLVQIKADMERKEQYLKMETQKKNDLITYLAHDLKTPLTSVMGYLNLLEDAPDMPL-AQ 213

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE- 664
           + +Y       +  L +L+ +  ++   +   + L    I L  +L ++K+     + + 
Sbjct: 214 REKYTHIARKKAERLDSLIQEFFEITRYNLQNITLEKENIDLYYMLIQMKEEFYPVLAQK 273

Query: 665 -NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N I +KV  D ++     D  +L ++F+ I+ NA+ +S   S + ++  +++       
Sbjct: 274 GNTIELKVPEDLQV---YGDADKLARVFNNIIRNAVSYSYPSSVITIEGEKNSDGVCLFF 330

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +N G +IP++    VF +F  +  A      G GLGL+I +  + LHGG +S  S  E  
Sbjct: 331 RNKGKTIPKEKLSRVFQKFFRIDEARSSDSAGSGLGLAIAKEIVELHGGSISAISEQEE- 389

Query: 782 TTINCRIPSK 791
           T     +P K
Sbjct: 390 TVFQIVLPEK 399


>gi|304440637|ref|ZP_07400521.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370824|gb|EFM24446.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 545

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 183/384 (47%), Gaps = 61/384 (15%)

Query: 423 VDLETKYNTLVKVQGETID----HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++LE  Y ++ K Q +T++     + EG+ +F    R+ L N +  ++ K   ++   G+
Sbjct: 203 LELEKLY-SIEKSQNDTVEAILTKMKEGLVIFDRSLRLVLINDSAINILKPINSK--KGS 259

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           HI  +        NES   D   A+   F  + K ++G +E+  + + EY I P   +  
Sbjct: 260 HILELT-------NESKILD---AVNEGF--KGKYIKGEIEI-DNKIYEYFISPESESLG 306

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +  + +TD    E  L  K E           F  +V++EL++PLT I GF +LLK+  
Sbjct: 307 GVALL-LTDKT-YEAGLKLKRE----------EFTSNVTHELKTPLTIISGFAELLKSGN 354

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV----LNDLLNEV 654
           +     K  ++   I   ST L  L++D+L ++ ++A     N + I+    L++L +EV
Sbjct: 355 VEE--EKIKEFGGIIYKQSTNLQRLIDDLLKISKLEA-----NDAVIIEELSLDELGDEV 407

Query: 655 KQSIATKMHENNI-------RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              +A ++   N+       R+K   +G++         + +    +L+NA+ ++  G  
Sbjct: 408 CDDLAIEIKNKNLNLVKDFDRVKAKVNGEM---------IKEAMMNLLTNAIKYNRDGGE 458

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
           +  K A+++G  +  + +NG  I E++   +F RF  V N+   +    GLGLSIV+  +
Sbjct: 459 IEFKIAKEDGFALVQISDNGIGIEEELLDRIFERFYVVDNSRSKKISSTGLGLSIVKHIV 518

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             HGG + ++S     +T    +P
Sbjct: 519 EAHGGRIEVTSEIGKGSTFTIYLP 542


>gi|260662241|ref|ZP_05863137.1| sensor histidine kinase [Lactobacillus fermentum 28-3-CHN]
 gi|260553624|gb|EEX26516.1| sensor histidine kinase [Lactobacillus fermentum 28-3-CHN]
          Length = 354

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 119/240 (49%), Gaps = 14/240 (5%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  + L K   +++ F+   S+E R+P+ +I G TDL++  +L     ++  Y+  IS  
Sbjct: 120 QMTDQLAKTATLRDDFINQFSHEFRTPIASIQGLTDLMQERELPK--KERQAYLALISKE 177

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-----ATKMHENNIRIKV 671
           +  L NL  ++L L T+++  +  N ++    DL  +V+Q++       + H+ N+ + +
Sbjct: 178 AHRLTNLSTNVLTLTTLESQTILNNQTSF---DLTEQVRQAVILLWPQLEEHKLNVNLTL 234

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                 G+  AD   L Q++  +++NA+ F+  G  + +K  R +     SV N+G  I 
Sbjct: 235 APATAFGN--ADL--LNQVWVNLINNAIKFTPDGGHLTIKIERHDDQIAVSVNNDGPLIS 290

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 +F +F    +R     +GLGL+I    I LH G +++ S+    TT    +PSK
Sbjct: 291 PTDQDHLFEKFYQADNRSNVGRLGLGLAIASRIIALHQGRITVVSNPADHTTFTVYLPSK 350


>gi|229589354|ref|YP_002871473.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361220|emb|CAY48084.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 633

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++     +QS+Y    S
Sbjct: 251 LIQTREEAERANNAKSDFLAMMSHELRTPMNGVLGMLQLMETTEM---TEEQSEYAALAS 307

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S+  LL ++NDILD + ++   ++L +    L DL+N   Q+      +  + +++ I 
Sbjct: 308 ESTEHLLKVINDILDFSRIERAALELEHIPFNLADLINSCAQAFQHSAQQRGLALQLSIP 367

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGS 728
            G     V  D  R+ QI   ++ NA+ F+  GS  +         D   F  +V+++G 
Sbjct: 368 QGMDALRVQGDPTRIRQILVNLIGNALKFTENGSVSVEPHWQTLDHDLVWFTCTVRDSGI 427

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D  + +F+ F        RR  G GLGL I  +     GG +   S +   +    
Sbjct: 428 GISADRLELMFDAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQSEESRGSVFTL 487

Query: 787 RIP 789
            IP
Sbjct: 488 EIP 490


>gi|227510398|ref|ZP_03940447.1| sensor kinase protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190050|gb|EEI70117.1| sensor kinase protein [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 468

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 135/289 (46%), Gaps = 26/289 (8%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           GW   ++           L  T    S S LEY  + LP  +T +    +T S       
Sbjct: 181 GWYFISSTAKRLTQPISQLSQTARDQSKSELEYETL-LPVPKTPMEVKQLTTS------F 233

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYIS 614
            E   ++   ++ +  F+ + ++ELR+P+  I G   L++  + G  + +   + +++I+
Sbjct: 234 NELLTSINHKNQQEKRFISNAAHELRTPIAAIRGHIQLVQ--RHGRDHPEIVDRSIQFIN 291

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKV 671
             S  +  LVND+L L+  D G +KL+Y  I L  LLNE    ++++  +    NI  K 
Sbjct: 292 NESARMQTLVNDLLALSRADRGDVKLDY--IDLTSLLNETVEEQRAVLKQTINVNIPTKA 349

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +         A+   + QI S +L NA  +S   S + +  ++    +  SV+N G  IP
Sbjct: 350 V-------VYANADNVQQILSALLDNAGKYSPADSQITVVLSQHGSQYSLSVQNTGPRIP 402

Query: 732 EDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           ++    +F RF     AH  Q  G GLGLSIV+    L+  H+ I+ +D
Sbjct: 403 DNQKDQIFERFYRGDQAHNHQVSGTGLGLSIVKQLAELN--HIQITVTD 449


>gi|16124976|ref|NP_419540.1| sensor histidine kinase / response regulator [Caulobacter
           crescentus CB15]
 gi|13421950|gb|AAK22708.1| sensor histidine kinase / response regulator [Caulobacter
           crescentus CB15]
          Length = 591

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 15/250 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL         A + K+ F+  +S+ELR+PL  ++G +  L   KL  L   + + VE 
Sbjct: 210 RALELAKSQAEAASQAKSEFLALMSHELRTPLNGMLGLSQAL---KLEPLEPGEREQVEL 266

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           +  S   LL L+ND+LD+A ++AG + +  +   L+ L   V +    +  E    I + 
Sbjct: 267 LEESGRTLLALLNDVLDMAKIEAGKLDIAPTQEDLSRLAERVVRINQAQAREKGTEITLE 326

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFS---VKNN 726
           I      + + D  R+ Q    ++SNA+ F+  G     +   A D  D + +   V + 
Sbjct: 327 IDPATPRALLFDPLRVRQCLGNLVSNAVKFTPAGQIRVRVTCEAGDQPDRMLAKIIVSDT 386

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
           G  +   +   +F  F        RR  G GLGL+I      + GG VS+ S++ +G T 
Sbjct: 387 GVGMGPAVLARIFTPFEQADPTIARRTGGTGLGLNITRRLAQMMGGSVSVRSTEGKGSTF 446

Query: 783 --TINCRIPS 790
             T  CR+PS
Sbjct: 447 TLTFGCRLPS 456


>gi|255941286|ref|XP_002561412.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586035|emb|CAP93776.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1025

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 20/249 (8%)

Query: 557 EKNEALRKADEIKN----SFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVE 611
           ++N A R+A E+ N     F+ ++S+E+R+P+  IIG + L L T  L +        V 
Sbjct: 502 QRNTAAREAAELANRSKSDFLANMSHEIRTPMNGIIGLSSLALDTDDLQAPVRDTLNMVH 561

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++ S   LL +++DILD++ ++A  M +  +   L   +  V ++++ + +E  + +  
Sbjct: 562 NLAIS---LLTIIDDILDISKIEANHMIIEKTPFSLGATVFSVLKALSVETNEKALGLVY 618

Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGDFIFSV 723
             DG++  + + D  RL Q+   ++ NA+ F+  G   +        K A D   F FSV
Sbjct: 619 TVDGEVPDYLIGDAYRLRQVMLNLVGNAIKFTDHGEIRVTVKHAQDDKCASDETAFQFSV 678

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780
            + G  I E     +F++F        RR  G GLGL+I +  ++L GG + ++S+  EG
Sbjct: 679 SDPGIGIDESKIGLIFDKFQQADGSMTRRFGGTGLGLAISKRLVSLMGGDIWVTSNVGEG 738

Query: 781 VT-TINCRI 788
            T +  CR+
Sbjct: 739 STFSFTCRV 747


>gi|313890185|ref|ZP_07823820.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121546|gb|EFR44650.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 881

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 129/254 (50%), Gaps = 15/254 (5%)

Query: 548 SVRAERALTEKNEALR----------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +V  E AL  + E LR          + ++++ + ++ +S++LR+PLT+I G   L+  +
Sbjct: 621 AVLGEAALALEKERLREEQQKIELKMQKEQLRANLLRAISHDLRTPLTSISGQARLMMET 680

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  + ++   YI   S  L+NL+ ++L +  +D   M L+ ST + ++++ E  + 
Sbjct: 681 GETLEKQQLTELATYIYDDSMWLINLIENLLSITKLDND-MTLSLSTNIFDEMVEEALKH 739

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +   +  +N  + +  D  +     D   ++Q+   I++NA+ ++ +GS + L + R + 
Sbjct: 740 VDRHLKHHNFILDLSDDLLMAKM--DGPLIVQVLINIINNAVKYTPEGSRITLTSKRKDQ 797

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           + +  V ++G  I +   + +F+ F +  NA    +RG+G+GLS+ +S I  HGG + + 
Sbjct: 798 NLVVEVSDDGPGISDQAKEKIFDLFYTSENASADGKRGLGIGLSLCKSIITAHGGTIYVH 857

Query: 776 SSDEGVTTINCRIP 789
            +      I   +P
Sbjct: 858 DNIPKGVIIGFTLP 871


>gi|310824676|ref|YP_003957034.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397748|gb|ADO75207.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 882

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 144/350 (41%), Gaps = 23/350 (6%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           QG T D          P GRI  S    R  W   + R SPG  I  ++    +      
Sbjct: 536 QGPTQDEPPPLALGVSPIGRIAQS----RKPWVVHDVRHSPGPEIAELSLPEEKVS---- 587

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
               FA       ++   L G L L S       I+ +  A   +    V +  RAE AL
Sbjct: 588 ----FAGYPLVLGEQ---LIGVLALASTQPFSRDIVDVLAAAAEIITQGV-ERRRAEEAL 639

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               + L +++E    F    S++L+ PL  +  +T LL     G L++   +++ Y   
Sbjct: 640 RLHAQELARSNEELQQFAYVASHDLQEPLRMVASYTQLLGRRYRGKLDADADEFIRYAVD 699

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               +  L+ D+L  + V  G    +         L   ++++   + E    ++V  +G
Sbjct: 700 GVNRMQRLIQDLLAYSRV--GTRGRDLKPCESLKPLERAQENLRAMLQETGGAVEV--EG 755

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPED 733
            L + +AD  +L+Q+F  ++ NA+ F       ++  A   G   + F+VK+NG  I   
Sbjct: 756 TLPTVLADESQLVQLFQNLVGNALKFHGPVPPRVVVRAESQGAEGWRFTVKDNGLGIDPQ 815

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
             + +F  F     R +  G G+GL+I +  +  HGG + + S   EG T
Sbjct: 816 YFERIFVIFQRLHGREEYPGTGIGLAICKKIVERHGGRIGVESQPGEGST 865


>gi|225571388|ref|ZP_03780384.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
           15053]
 gi|225159864|gb|EEG72483.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
           15053]
          Length = 976

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 116/235 (49%), Gaps = 12/235 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +VR + +L +      K +  K  F+  +S+E+R+P+  I+G +DL  T  +  +     
Sbjct: 576 AVRMQNSLAKA----EKENRAKGEFLSRMSHEIRTPMNAIVGLSDL--TCMMDDVPETVR 629

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I +SS  LL L++DILD++ ++  +M +      +  ++NE++  +  +     +
Sbjct: 630 VNLSKIRSSSRYLLGLISDILDMSRIEQDMMTIVREPFSIGQVMNELESMMTAEAGRREL 689

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFS 722
             K+    K    + D  RL Q+   ++SNA  F+S G  + +     +A+ +   F F 
Sbjct: 690 EFKLDLRIKSDRLIGDAVRLKQVLMNLISNAFKFTSAGGRIRVDVTETEASAEEAVFCFR 749

Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V +NG  I E   + +F  F     +  + +G GLGL+I ++ + L GG + + S
Sbjct: 750 VADNGIGISEKDQERIFESFEQVGTNYSKSQGTGLGLAISKNIVELMGGKLELKS 804


>gi|221233697|ref|YP_002516133.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|220962869|gb|ACL94225.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 566

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 15/250 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL         A + K+ F+  +S+ELR+PL  ++G +  L   KL  L   + + VE 
Sbjct: 185 RALELAKSQAEAASQAKSEFLALMSHELRTPLNGMLGLSQAL---KLEPLEPGEREQVEL 241

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           +  S   LL L+ND+LD+A ++AG + +  +   L+ L   V +    +  E    I + 
Sbjct: 242 LEESGRTLLALLNDVLDMAKIEAGKLDIAPTQEDLSRLAERVVRINQAQAREKGTEITLE 301

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFS---VKNN 726
           I      + + D  R+ Q    ++SNA+ F+  G     +   A D  D + +   V + 
Sbjct: 302 IDPATPRALLFDPLRVRQCLGNLVSNAVKFTPAGQIRVRVTCEAGDQPDRMLAKIIVSDT 361

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT- 782
           G  +   +   +F  F        RR  G GLGL+I      + GG VS+ S++ +G T 
Sbjct: 362 GVGMGPAVLARIFTPFEQADPTIARRTGGTGLGLNITRRLAQMMGGSVSVRSTEGKGSTF 421

Query: 783 --TINCRIPS 790
             T  CR+PS
Sbjct: 422 TLTFGCRLPS 431


>gi|218894079|ref|YP_002442948.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218774307|emb|CAW30124.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 998

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 18/223 (8%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD  K+ F+  +S+E+R+PL  I+G  +LL+ + LG    +  Q +  ++ +   LL ++
Sbjct: 503 ADRAKSRFLATMSHEIRTPLNGILGMAELLREASLG---ERDRQRLRALATAGEGLLAIL 559

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGS 679
           N++L  A ++            L  LL +V   +  +  EN  R+ +     + DG  G+
Sbjct: 560 NEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGA 619

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                Q L Q+ + +L NA+ F+  G        L  +  +     SV ++G  IPE+M 
Sbjct: 620 ----EQFLRQVLTNLLGNAVKFTEAGEVRVRVERLVRSAGSERLRLSVADDGIGIPEEMR 675

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F RF        RR  G GLGL+I +  +   GG + + S
Sbjct: 676 ERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVES 718


>gi|254413294|ref|ZP_05027065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179914|gb|EDX74907.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 498

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 128/273 (46%), Gaps = 24/273 (8%)

Query: 526 LEYSIIPLPNAQTMLTFVN--VTDSVRAERALTEKNEALRK----------ADEIKNSFV 573
           + Y+   + N+Q  + +    + D  + ++A TE+ + L+           A+ +K+ F+
Sbjct: 206 VRYNARAIRNSQGEVMYYEGAIEDVTQRKQAETERTQLLKSEQAARAEAETANRLKDEFL 265

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PL  I+G+  LL+  +L     K  + +E I  ++     L++D+LD++ +
Sbjct: 266 ATLSHELRTPLNAILGWAGLLRRKQLSP--DKVQRALEVIERNAKSQAQLIDDLLDVSRI 323

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
             G ++L    + L  ++N    ++       +I+I    +        D  RL QI   
Sbjct: 324 IRGNLRLTVIPVDLQQIINAAIDTLQPAADAKSIQIDSFLEPSQTVIKGDSDRLQQIVWN 383

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF------VSNAH 747
           +LSNA+ F+     V +            V++ G  +  D+   +F+RF      ++ +H
Sbjct: 384 LLSNAIKFTPTHGQVKIYLEWLENAVQIRVQDTGKGVSVDIAPYIFDRFRQAEGSITRSH 443

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
                G+GLGL+IV   + LHGG V   S  +G
Sbjct: 444 ----GGLGLGLAIVRHLVELHGGTVWCESDGDG 472


>gi|308187795|ref|YP_003931926.1| two-component system sensor kinase [Pantoea vagans C9-1]
 gi|308058305|gb|ADO10477.1| two-component system sensor kinase [Pantoea vagans C9-1]
          Length = 475

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 118/228 (51%), Gaps = 13/228 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           +E L+  +  ++ F++H+S+EL++PL ++   T+LL     GSLN+ Q + V  + +SS 
Sbjct: 240 SERLQWLESQRHEFLRHLSHELKTPLASLREGTELLADEVAGSLNADQKEVVTILDSSSR 299

Query: 619 ILLNLVNDILD----LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            L  L+  +LD    LA     +  ++ + IV  D++N    S   K+      ++ + D
Sbjct: 300 HLQQLIEQLLDYNRKLADGPIALEPVSVAEIV-EDVVNAHALSARAKL------MQTVVD 352

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K+   +A+   L+++   + SNA+++ S+  T+ L++ +        V N+GS IP + 
Sbjct: 353 LKVNHCLAEPMLLMRVIDNLYSNAVNYGSESGTIWLRSQQQGDRVWIEVANSGSPIPPEE 412

Query: 735 CKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              +F  F   S   +G  +G GLGLSI +  +    G +++ S D+ 
Sbjct: 413 QAMIFEPFYQGSQQRKGPVKGSGLGLSIAKDCLRRMQGDLTLVSCDQA 460


>gi|307690355|ref|ZP_07632801.1| histidine kinase [Clostridium cellulovorans 743B]
          Length = 1069

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 134/262 (51%), Gaps = 11/262 (4%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            N +T+L    + + ++  + L +K   L K +  KN++  ++S+ELR+PL  I+    L+
Sbjct: 807  NQRTIL----LNNKLKENKTLYDK---LIKYERSKNNYFINLSHELRTPLNVILSTLQLI 859

Query: 595  KTSKLGSLNSKQ---SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
                 G    ++   ++YV+ +S +S  LL ++ND++D + ++ G  KL  S + +  L+
Sbjct: 860  SNLNEGEKYIEKPNLNKYVDIMSRNSLRLLKVINDLIDASKIENGDYKLTISEVDIVYLV 919

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             EV  S+   +  NNI + +  D +      DR ++ +    +LSNA  +S+K  ++ + 
Sbjct: 920  EEVALSMKDYIESNNIDLIIDPDIEEKLIECDRTQIERCIVNLLSNATKYSNKNGSIWVT 979

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGG 770
               D+     S+K+NG  I       +F RF   N     ++G G+GLS+V+S + LH G
Sbjct: 980  ILDDDTKVRISIKDNGIGIAPKNHDIIFERFGQVNNSESNKKGSGIGLSLVKSLVELHNG 1039

Query: 771  HVSISSSDEGVTTINCRIPSKE 792
             + + S +   +     +P ++
Sbjct: 1040 TIDLISEEGKGSDFIISLPVRQ 1061


>gi|284165631|ref|YP_003403910.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015286|gb|ADB61237.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 767

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 125/256 (48%), Gaps = 19/256 (7%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++T  ++T+    +R L E NE L +       F    S++L+ PL  +  +  LL++  
Sbjct: 523 VVTISDITERRAYQRKLEESNERLEQ-------FAYAASHDLQEPLRMVTSYLQLLESRY 575

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             + +    +++E+    +  +  +++ +L+ + V+       +    LND+L +V+  +
Sbjct: 576 ADAFDEDGREFLEFAVDGADRMRAMIDGLLEYSRVET--RGDPFEPTDLNDVLEDVRSDL 633

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG- 717
             ++ E+   I       L     D  +L Q+F  +LSNA+ +S +GS  +   AR  G 
Sbjct: 634 QLQIEESGAEITTED---LPRVNGDVDQLRQLFQNLLSNAIIYSGEGSPRVRVDARRRGR 690

Query: 718 DFIFSVKNNGSSI-PEDMCK--SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            ++ SV++NG  I PED  +  +VF+R  S   R +  G G+GL++ E  +  HGG + +
Sbjct: 691 QWVISVEDNGIGIDPEDQERIFTVFDRLHS---REEYEGTGIGLALCERIVERHGGEIWV 747

Query: 775 SSSDEGVTTINCRIPS 790
            S      T +  +P+
Sbjct: 748 DSEAGDGATFSMTLPA 763


>gi|317049304|ref|YP_004116952.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
 gi|316950921|gb|ADU70396.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
          Length = 908

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 13/229 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q  Y+  I  S+  LL
Sbjct: 287 QEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTG----LSTNQRDYMSTIERSAANLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +++ND+LD + ++AG + L      L   L+E    +A   HE  + + V  + ++  + 
Sbjct: 343 SIINDVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHEKGLEMTVCLEKQVPDNV 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI---FSVKNNGSSIPEDMCK 736
           + D  RL QI   ++ NA+ F+ +G   +    R+ N   +     V + G  I +    
Sbjct: 403 IGDPLRLQQILINLIGNAIKFTEQGHIDLRVELRNTNATRVALEIQVHDTGIGISDQQQT 462

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
            +F  F        RR  G GLGL I +  ++  GG ++  S   EG T
Sbjct: 463 QLFQAFRQADASISRRHGGTGLGLVITQKLVHEMGGEIAFHSRQGEGST 511


>gi|219851326|ref|YP_002465758.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219545585|gb|ACL16035.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 929

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 8/244 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+  + E    +  E L  ++E    +    S++L+ PL +I+ F+ LL     G 
Sbjct: 683 LLDITERKQFETTQKKYAEKLMASNEELQRYAYVASHDLQEPLRSIVSFSQLLDRRYRGK 742

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+    +Y+++I      +  L+ D+L ++ ++     L  +    N ++ +  +S+ T 
Sbjct: 743 LDKDADEYIKFIVDGGVRMQALIKDLLQVSRIETQAQPLAPTDA--NAVVADSIRSLKTP 800

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSKGSTVILKAARDNGDF 719
           +H+NN R+ V     L   +AD  +L QIF+ ++ NA+ +        + + A R    +
Sbjct: 801 IHDNNARVTV---DPLPIVMADPSQLEQIFTNLIGNAIKYHRPEMPPAITVSAERHGNWW 857

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-D 778
            FSV++NG  I  +    +F  F       +  G G+GL+IV+  +  HGG + I S   
Sbjct: 858 EFSVRDNGIGIKAEFFDRIFEMFRRLHTIDEYEGTGIGLAIVKKIVERHGGRIRIESELG 917

Query: 779 EGVT 782
           EG T
Sbjct: 918 EGST 921


>gi|56460555|ref|YP_155836.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR]
 gi|56179565|gb|AAV82287.1| Hybrid sensor histidine kinase [Idiomarina loihiensis L2TR]
          Length = 644

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 27/261 (10%)

Query: 541 TFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           T  +VT+  +AE  AL        KA   KN F+ ++S+E+R+PL  I+G   +L+++  
Sbjct: 252 TVTDVTEQKKAELNAL--------KAAHAKNVFLANMSHEIRTPLHGILGIASVLEST-- 301

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN  Q Q +  I  S   LL  +ND+LDL   + G +K+         +L  V Q   
Sbjct: 302 -DLNPYQQQLLGTIKNSGDYLLTTLNDVLDLTQAEEGQLKVKRGVHSPAKVLGHVIQLFE 360

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
             + +  +   +  D  +    + DR R+ Q+ S ++SNA+ F+ +GS  I KA+     
Sbjct: 361 QPVKDKGLEFIIDIDADIPERTLMDRARIAQVISNLVSNALKFTERGSIAI-KASWEVDS 419

Query: 714 --RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768
             +  GD I  V++ G  I +   + ++  F      G  R   G GLGL+IV + + L 
Sbjct: 420 EKQSEGDLIVKVQDTGVGIYD--TQRIWQLF-EQEQDGLNRPEGGSGLGLAIVRNLVQLL 476

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G + + S  E  +     IP
Sbjct: 477 SGTIQVDSEPEQGSCFTLCIP 497


>gi|39998228|ref|NP_954179.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39985174|gb|AAR36529.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298507165|gb|ADI85888.1| response receiver histidine kinase [Geobacter sulfurreducens KN400]
          Length = 484

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 120/246 (48%), Gaps = 12/246 (4%)

Query: 549 VRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           VR E A+  TE+ E  R  DE+    +  VS+E+ +PLT ++GFT+ L  +++      Q
Sbjct: 245 VRMEIAIDITERKEMERMKDEM----ISAVSHEMHTPLTAMMGFTEFLLENEVD--RDLQ 298

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ I   +  L  L+ + L L  + A ++K   + + +  L+ +V    A    ++ 
Sbjct: 299 KNYLKTIYRETERLNELITNFLQLQRLKASMVKFRITPVAVGLLVADVVSLYAAASKKHR 358

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I ++   D  L     + ++L Q  S ++SNA+ +S  G  V + A+         V++ 
Sbjct: 359 IVVECPPD--LPPVRGNEEQLYQAISNLVSNAIKYSPDGGDVTIGASAAADIVTLWVRDQ 416

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +  + +F RF  V N+ R +  G GLGL++V   +  HGG   + SS    +T 
Sbjct: 417 GIGISPEFQEKIFERFFRVDNSDRRKVGGAGLGLTLVREIVATHGGRSWVESSPGKGSTF 476

Query: 785 NCRIPS 790
              +P+
Sbjct: 477 FISLPA 482


>gi|325663721|ref|ZP_08152125.1| hypothetical protein HMPREF0490_02866 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470214|gb|EGC73447.1| hypothetical protein HMPREF0490_02866 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 286

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 123/237 (51%), Gaps = 8/237 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EA+ ++++ KN  V  ++++L++PLT+I+ +  +L+T     +  ++ +   +IS  
Sbjct: 50  QEQEAI-ESEKKKNDLVVFLAHDLKTPLTSIVAYLSILETKP--DMPEEERKKYTHISLE 106

Query: 617 STILL-NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             I L  L+N+  ++   +   + L    + L+ +L ++   +   + E N+R  V  D 
Sbjct: 107 KAIRLGELINEFFEITKFNLQDIVLEPGNLDLSMMLEQIADELYAVLKEKNLRCDVQIDD 166

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L  +  D  +L ++F  +L NA+ + +KG+ + ++A   + +    V N G  IPE+  
Sbjct: 167 TLMIY-GDADKLARVFDNLLRNAIAYCNKGTAIRIQAKERHQEIEIVVANEGEKIPEEEL 225

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++F +F  V  +   +  G GLGL+I +  + LH G +  + SDE  T     +P+
Sbjct: 226 SAIFEKFYRVDGSRSSKTGGAGLGLAIAKEIVELHHGTIR-AESDEWETRFIVTLPA 281


>gi|323700306|ref|ZP_08112218.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323460238|gb|EGB16103.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 649

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-------KLGSLN 603
           A R  TE+   L   D  K  F+   S+ELR+PLT+IIGF  L++ +        LG L+
Sbjct: 390 AHRRETERE--LIAMDRTKTMFLASASHELRTPLTSIIGFLHLMEKNFRTRFLPVLGPLD 447

Query: 604 --SKQSQYVE----YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +Q++  E     +   +  L  LVND+LDL+ ++AG M+   + + ++ +L    ++
Sbjct: 448 PVGRQARTFEKNLAVVRVEADRLGRLVNDLLDLSKIEAGRMEWRENILSVDLVLQRAGEA 507

Query: 658 IATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            A+   +   +R+ V    +    +AD  R+ Q+   +LSNA   +  GS V L A R  
Sbjct: 508 SASLAEDRPGVRLVVEPLTEPMGILADADRVHQVLINLLSNAFKNTEAGS-VTLSAVRTG 566

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS----NAHRGQRRGVGLGLSIVESFINLHGGHV 772
               FSV++ G  I ED  + +F+ F      N    Q  G GLGLSI    +  +G  +
Sbjct: 567 AGATFSVRDTGRGISEDEREKIFDLFYQGRDENNRSTQVLGTGLGLSICRRIVAHYGSRL 626

Query: 773 SISS 776
            + S
Sbjct: 627 EVDS 630


>gi|299535467|ref|ZP_07048789.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
 gi|298729228|gb|EFI69781.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
          Length = 511

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 119/232 (51%), Gaps = 8/232 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTI 619
           L + ++I+  FV +VS+ELR+P+T+I GF++ L     G+   ++    ++E I   S  
Sbjct: 282 LVRLEQIRKDFVANVSHELRTPITSIKGFSETLLD---GAYKDEKMLISFLEIIYKESNR 338

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ D+L+L+ ++     +N   + L D+L    +  A ++ E N+  +V  +  +  
Sbjct: 339 LQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIERDV-Q 397

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R++QI + +++NA+ +S + +TV ++   +    I  +++ G  I +     VF
Sbjct: 398 VMGDANRIIQIVTNLITNAITYSPENTTVSIRLKENETHGIIEIEDQGIGIEKHEIARVF 457

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A      G GLGL+IV+  +  H G + + S     T +   IP
Sbjct: 458 ERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEVGIGTKMIVMIP 509


>gi|182701655|ref|ZP_02613649.2| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182701853|ref|ZP_02616687.2| sensor histidine kinase [Clostridium botulinum Bf]
 gi|226950785|ref|YP_002805876.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|182670157|gb|EDT82133.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182674750|gb|EDT86711.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|226841157|gb|ACO83823.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 448

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +    +++  E +  F+ ++S++LR+PLT+I+GF +LLK  K  +   ++  Y+  I
Sbjct: 215 ALNDMGGKIKENKENEKEFLLNISHDLRTPLTSILGFLNLLKQKKYDTEEEREG-YINTI 273

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L  L+++    +T+    +KLN   I L ++L ++      ++ EN I + +  
Sbjct: 274 EEQSLYLKTLIDEFFQFSTLKWKNVKLNKENINLQEILRQISDGFYPQLKENKISVSMNF 333

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG-SSIPE 732
             K      D  + +++   ++SNA+ +S KG+ + L    +    +    N    ++ E
Sbjct: 334 PEKSLYKEVDVDKFMRVLENVISNAIKYSHKGTEISLNLYENKDKIVMEFWNTPIEALKE 393

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           D    +F RF         +G GLGLSI    + LHGG +     +E +  I
Sbjct: 394 DELDFLFKRFYKKDLSRGNKGAGLGLSIALEAVKLHGGELYAVMKNERLGII 445


>gi|163756771|ref|ZP_02163881.1| sensor histidine kinase [Kordia algicida OT-1]
 gi|161323288|gb|EDP94627.1| sensor histidine kinase [Kordia algicida OT-1]
          Length = 407

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 155/305 (50%), Gaps = 25/305 (8%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R   E+   +L+A +      E+K +Q T EL S+++ E        A+  L      D 
Sbjct: 123 RKQQEAKIQELYAGL------EQKVMQRTQEL-SETIAELE------AENKLRLQAEKD- 168

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+ AL  + E     +E+K  F+  VS+E ++PL++I+  + LL   KL    +K+ +
Sbjct: 169 --AKTALKREQEL----NELKTKFLSLVSHEFKTPLSSILTSSMLLGKYKLTEQQAKRDR 222

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ IS     L N++ND L +  ++ G +    ST  ++ ++NEV  + A  + ++  +
Sbjct: 223 HIKIISDKVHYLNNILNDFLSVEKLEKGKVNYKLSTFKVSKVVNEVVYN-ANMLLKDGQQ 281

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--FSVKNN 726
           I    +    S   D + +    S +++NA+ +SS+ + + +   +D  DFI    +K+N
Sbjct: 282 INYPDNIDGFSLHQDEKIIELALSNVVNNAIKYSSENTIIDISITQD--DFITTIQIKDN 339

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  IPE   K++FNR+    +    +G G+GL+IV++ +    G +S  S +   TT   
Sbjct: 340 GIGIPEKEQKNIFNRYFRAENALLVQGTGIGLNIVKNHLENLKGSISFESIENVGTTFTL 399

Query: 787 RIPSK 791
           +IP+K
Sbjct: 400 KIPNK 404


>gi|162449198|ref|YP_001611566.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159780|emb|CAN91085.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 779

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 175/399 (43%), Gaps = 38/399 (9%)

Query: 401 HVIVTSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV---AVF--GPD 453
           +VI+T+  RG  G +  F  +T  +    +    ++   E    L EGV   A+F   P+
Sbjct: 245 NVIITAL-RGPDGELRGFCKITRDLTERKRQEESLRQSEERFRTLVEGVKDYAIFMLDPE 303

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIIT------S 506
           GR+        ++W     R+   +    I    SR+Y  E+       A++       S
Sbjct: 304 GRV--------TMWNAGAERIKGYSAQEVIGTHFSRFYPAEAIERGRPEAVLAAARREGS 355

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           F+DE   ++        SVL  +I   P+ + +  F  +T  +   + L +     R+ +
Sbjct: 356 FEDEGWRVRKDGSSFWASVLVTAIYG-PSGE-LRGFSKITRDLSERKRLEQMESNARQME 413

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E    FV  +++ELR+PL  I   T +LK    G  N++       +      L+ LV+D
Sbjct: 414 E----FVAMLAHELRNPLAPIANATSVLKLE--GKDNAQVVWAAGLMERQLGQLVRLVDD 467

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--KMHENNIRIKVISDGKLGSFVADR 684
           +LD++ +  G + L    I L D++    ++  T     E  + ++ + +G L     D 
Sbjct: 468 LLDVSRITRGKIALESKRIDLADVVTRAAEASRTWIDAREQTLELQ-LPEGPLAIVSGDL 526

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+ S +L NA  F+     + +    D+   I  V++NG  I  ++   VF+ F +
Sbjct: 527 ARLTQVVSNLLHNAAKFTPPRGAIRVTVEADDAHAILRVRDNGVGISPELLPQVFDLF-T 585

Query: 745 NAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEG 780
              RG  R   G+GLGL+IV   + LHGG V   S   G
Sbjct: 586 QGDRGLDRVEGGLGLGLTIVRRLVELHGGTVQALSEGPG 624


>gi|71906644|ref|YP_284231.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71846265|gb|AAZ45761.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 497

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 17/242 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL+   EA   A+  KN+F+  +S+EL +PL+ I+G T+L+K +   +  + Q+Q ++ 
Sbjct: 237 RALSIAKEAAETANRAKNTFLATMSHELLTPLSGIMGITELMKRNAADA--TTQNQLLKM 294

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
             A +  LL+++N IL  + ++AG + L  +   L+ +L  V   +     E  I + V 
Sbjct: 295 GDAQNR-LLHVINGILQHSKLEAGRLTLECNAFSLSSILKWVSSHLHPLADEKEIALAVA 353

Query: 673 S----DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI---FSV 723
                DG    F  D  R+ QI S+  +NA+ F+ +G +  V  +     GD +   F+V
Sbjct: 354 DLSGWDGV--EFFGDSARIGQIVSEFAANAIKFTERGGSVKVACEVVEVPGDAVLCRFAV 411

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +NG  I  +    VFN F  V  +      G+GLGL+I +    L GG V  + S  GV
Sbjct: 412 SDNGIGISPEKLDRVFNSFEQVDGSFSRAYGGLGLGLAICKQLAELMGGKVG-AVSKPGV 470

Query: 782 TT 783
            +
Sbjct: 471 GS 472


>gi|16125841|ref|NP_420405.1| sensor histidine kinase KdpD [Caulobacter crescentus CB15]
 gi|221234603|ref|YP_002517039.1| osmosensitive K+ channel histidine kinase kdpD [Caulobacter
           crescentus NA1000]
 gi|13422989|gb|AAK23573.1| sensor histidine kinase KdpD [Caulobacter crescentus CB15]
 gi|220963775|gb|ACL95131.1| osmosensitive K+ channel histidine kinase kdpD [Caulobacter
           crescentus NA1000]
          Length = 892

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + E LR+AD  +++ +  VS++LR+PL+ ++G +  L           +   V  I   +
Sbjct: 650 ETETLRRADRFRSALMNSVSHDLRTPLSTVLGASTTLIDYGDKLAKPVREDLVVSIREEA 709

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L   V ++LD+  ++ G ++L    I + D+LN     ++ ++    +      +  L
Sbjct: 710 ERLNRYVANLLDMTRIEGGALRLRTDWIDVRDVLNAAADRVSRRLGGRELARDFPRE--L 767

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               AD   L Q+   +L NA+ +S   + + + A  D  + + S+++ G  IP    + 
Sbjct: 768 SLIQADASLLEQVVVNVLENAIAYSPPEARIEMAAYEDRANVVISIEDEGRGIPTSELER 827

Query: 738 VFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
           VF++F        R +G GLGLSI + FI+  GG ++ +S 
Sbjct: 828 VFDKFRRMEEPSDRTQGAGLGLSIAKGFIDALGGRIAAASP 868


>gi|331087241|ref|ZP_08336311.1| hypothetical protein HMPREF0987_02614 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408927|gb|EGG88388.1| hypothetical protein HMPREF0987_02614 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 378

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EA+ ++++ KN  V  ++++L++PLT+I+ +  +L+T     +  ++ +   +IS  
Sbjct: 142 QEQEAI-ESEKKKNDLVVFLAHDLKTPLTSIVAYLSILETKP--DMPEEERKKYTHISLE 198

Query: 617 STILLN-LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             I L  L+N+  ++   +   + L    + L+ +L ++   +   + E N+R  V  D 
Sbjct: 199 KAIRLGELINEFFEITKFNLQDIVLEPGNLDLSMMLEQIADELYAVLKEKNLRCDVQIDD 258

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L  +  D  +L ++F  +L NA+ +  KG+ + ++A   + +    V N G  IPE+  
Sbjct: 259 TLMIY-GDADKLARVFDNLLRNAIAYCDKGTAIRIQAKERHQEIEIVVANEGEKIPEEEL 317

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++F +F  V  +   +  G GLGL+I +  + LH G +  + SDE  T     +P+
Sbjct: 318 SAIFEKFYRVDGSRSSKTGGAGLGLAIAKEIVELHHGTIR-AESDEWETRFIVTLPA 373


>gi|326802680|ref|YP_004320498.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651672|gb|AEA01855.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 385

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 122/234 (52%), Gaps = 3/234 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+ +E K+  + ++S+++R+PLT++IG+  L++  ++   +  Q +YV      +  
Sbjct: 139 EEERRIEESKDELIANMSHDIRTPLTSVIGYLGLIENKQIDDPDKIQ-EYVHIAYDKALQ 197

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  +V D+ +   +     K+N     +  LL ++      +  E   RI+V S G+   
Sbjct: 198 MQKMVEDLFEYTKIQNINTKINTQKTNVVRLLEQLSAEFELQADEVGRRIEVDSSGQEDI 257

Query: 680 FVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +V  D + ++++FS +++NA+ +  +G  ++L+         F V ++G+ I +   +++
Sbjct: 258 WVEIDPETIVRLFSNLITNAIKYGGEGDYILLRVIPQKDTTRFEVIDDGNEISKAALENL 317

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F RF         +G GLGL+I ++ +NLH G +  + SD G T     +P+++
Sbjct: 318 FQRFYRVDPSRTTKGSGLGLAIAQTIVNLHHGKIW-AESDHGQTRFIFVLPNQQ 370


>gi|291523426|emb|CBK81719.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 1068

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 137/271 (50%), Gaps = 27/271 (9%)

Query: 537 QTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + ++  ++VT   +AE    +AL E   +   A+  K  F+ ++S+++R+P+  I+G T 
Sbjct: 523 KVLMASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTA 582

Query: 593 LLKTSKLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +      G+    + + +E    I+ SS  LL L+N++LD+A +++G M L      L++
Sbjct: 583 I-----AGANVESKDRVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSE 637

Query: 650 LLNEV----KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++ +    K  +    H  +I I  I      +   D  R+ Q+F  ++SNA+ ++  G
Sbjct: 638 LVDNLITLTKPMLDEHKHNFDIHINHIEH---EAVCGDSLRIQQVFVNLMSNAIKYTPDG 694

Query: 706 STVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLG 757
             +I           + G + F++++NG  +  +  K +F+ F  ++ HR  R +G GLG
Sbjct: 695 GNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSTEFQKIMFDPFSRADDHRTTRVQGTGLG 754

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++I  + +NL  G++ + S+    T I   I
Sbjct: 755 MAISRNIVNLMNGNIKVDSTLHKGTRITVTI 785


>gi|262278732|ref|ZP_06056517.1| signal transduction histidine kinase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259083|gb|EEY77816.1| signal transduction histidine kinase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 1154

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 135/261 (51%), Gaps = 8/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +       + L +   +  +A++ K+ +V  +S+ELR+PL +I+G++ LL+ 
Sbjct: 652 QTALLIDEIAAHEVTSKDLQDARISAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 711

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L+ +    +  IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q
Sbjct: 712 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 769

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  + N++        L  +V  D++RL Q+   +L NA+ F++ G T+ LK    
Sbjct: 770 MFQPQFEQKNLQFIYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYR 828

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I E   + +FN F   SN  +G   G GLGL IV+  ++L GG +S
Sbjct: 829 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLS 888

Query: 774 ISSS-DEGVT-TINCRIPSKE 792
           +SS  ++G    I   +PSKE
Sbjct: 889 VSSQLNQGSQFKIKFYLPSKE 909


>gi|229184787|ref|ZP_04311980.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228598691|gb|EEK56318.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
          Length = 312

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 3/222 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A++ K+  + +VS++LR+PLT+I+G+ +L+          +   Y++ I    T L  
Sbjct: 82  RQAEQAKSELITNVSHDLRTPLTSIVGYVNLIHHDNYRD-EVELRHYIQVIYDKVTRLNA 140

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ND+ +   V    + L    I + +LL ++      +  E NI  +     +    +A
Sbjct: 141 LMNDLFEYTRVQNKELSLYSVPIDIVELLGQLTVQFRIQFQEANIECRPSFPSQKLMVLA 200

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L+++F  ++ NA+ + + G  +   A   N      + N G  IP      +F RF
Sbjct: 201 DGDKLVRVFENLIINAIAYGNDGDYIDFAAYESNNMITIDITNYGQPIPSTDLPHIFERF 260

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             V  +      G GLGL+I +S + LH G + + S D+  T
Sbjct: 261 YRVEKSRSTNTGGSGLGLAIAKSIVELHKGTIEVYSDDKKTT 302


>gi|125973031|ref|YP_001036941.1| histidine kinase [Clostridium thermocellum ATCC 27405]
 gi|125713256|gb|ABN51748.1| histidine kinase [Clostridium thermocellum ATCC 27405]
          Length = 440

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+ + +      K+ F+  +++E ++PL  I      ++      L  +  +Y+  I  +
Sbjct: 160 EQKKYIENLARFKDEFLYGITHEFKTPLVVISSALQAIEALCRDELTDRVKKYLNRIKQN 219

Query: 617 STILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +   + LVN++LD+A ++AG   I K N   + L  L+ E   S++       +++   S
Sbjct: 220 TFRQIRLVNNLLDIARIEAGHIKIFKRNLDIVALTRLITE---SVSMFADLKGVQLLFYS 276

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +        D ++  +I   +LSNA+ F+ K  +V ++ +   G     VK++G  IP+D
Sbjct: 277 NIDKKIIAIDEEKYERIMLNLLSNAIKFTPKDRSVYVEVSAKEGCVEIKVKDSGIGIPKD 336

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             K++F RF  V ++      G G+GLS+V  F+N  GG +S++S +   +T    +P
Sbjct: 337 KIKTIFERFGQVDSSLSRNAEGTGIGLSLVRMFVNAMGGEISVTSEENIGSTFTVTLP 394


>gi|219849612|ref|YP_002464045.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543871|gb|ACL25609.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 596

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 110/225 (48%), Gaps = 2/225 (0%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           ++F+  +S+ELR+PLT I+G++++++        +     ++ +  +   LLNL+NDIL+
Sbjct: 362 STFLAMMSHELRTPLTAILGYSEVIRDDLQIRGQNDLIADLDRVVLAGRHLLNLINDILE 421

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           LA ++A  +++    + L +++ EV  +       N   + V  +  L    AD  RL Q
Sbjct: 422 LARLEANSLQVYPEPLHLAEIVTEVVSTSHGLAQRNQNTLTVTVEPNLPPVKADPTRLRQ 481

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +   ++ NA  F+ +G   +   +   G     V + G  IP +   S+F  F+   +  
Sbjct: 482 VLLNLIGNACKFTEQGQIHVRCYSPQPGIIQIDVSDTGIGIPPEQLASLFQPFMQVDNGT 541

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RR  G GLGL+I        GG + + S  +  +T + R+P  +
Sbjct: 542 TRRYGGAGLGLAISRRLCQAMGGEIVVESEPQRGSTFSVRLPVAD 586


>gi|332994707|gb|AEF04762.1| sensor protein BarA [Alteromonas sp. SN2]
          Length = 1043

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 17/252 (6%)

Query: 546 TDSVRAERALTEKNEALR--------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TD +R    L E+  A          KA  +K+ F+ ++S+E+R+PL  I+GF+  L  +
Sbjct: 400 TDDLRNNMELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTPLNGILGFSRELTHA 459

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL S Q + V  I+ ++  LL +VND+LD + ++AG +++N      N LL E+   
Sbjct: 460 ---SLPSDQQEQVRIINTAADNLLTIVNDVLDFSKIEAGKLQINNQPFSPNTLLEEMVTI 516

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
           +A   H   +             + D  R+ QI + +L NA+ F+  G+  +    R   
Sbjct: 517 MAKSSHSKKLEFVFDLAPLPEKLIGDVFRIKQILNNLLGNALKFTPSGTITLAVKGRPLL 576

Query: 716 NG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           +G  +   +V++ G  I     K +FN F  V ++     +G GLGL I    + L  G 
Sbjct: 577 HGIHEIEITVEDTGIGINRQDRKKLFNAFSQVDDSINRNYQGTGLGLVISRELVRLMRGD 636

Query: 772 VSISSSDEGVTT 783
           +++ S+    +T
Sbjct: 637 LTLKSTPRQGST 648


>gi|317471316|ref|ZP_07930675.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901209|gb|EFV23164.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 640

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 135/258 (52%), Gaps = 26/258 (10%)

Query: 551 AERALTEKNEA------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           AE    EKN A        KA+  K+ F+  +S+E+R+P+  IIG T L+    L + ++
Sbjct: 107 AELLAAEKNRAEEAFKHAEKANLAKSEFLSRMSHEIRTPMNGIIGMT-LIAGQNLQN-SA 164

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN---YSTIVLNDLLNEV--KQSIA 659
           K S  ++ IS SS  LL L+ND+LD++ +++G +++    +   V  + L  V   Q+++
Sbjct: 165 KISDCLKKISLSSKHLLALINDVLDMSKIESGKIEIKNEVFDFKVFIESLTTVYYAQAVS 224

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNG 717
            K++ + I I  + +      + D  RL QI + +LSNA+ F+ +G  V L+    R+  
Sbjct: 225 KKLNFDTILIGEVRE----ELIGDSLRLNQIITNLLSNAIKFTPEGGNVTLRIQELREED 280

Query: 718 D---FIFSVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           +   F F V++ G  + PE+M K +FN F        ++  G GLGLSI   F +L GG 
Sbjct: 281 ELVWFRFQVEDTGCGVAPENMEK-IFNAFEQETSDVAQKYGGTGLGLSISRRFASLMGGS 339

Query: 772 VSISSSDEGVTTINCRIP 789
           + ++S     +     IP
Sbjct: 340 LILNSEVGKGSVFTADIP 357


>gi|312875839|ref|ZP_07735829.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797320|gb|EFR13659.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 575

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 10/233 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTI 619
           L+K + I++ FV +VS+EL++PLT+I GF + LK    G+++ K   ++++  I      
Sbjct: 339 LKKLERIRSDFVANVSHELKTPLTSIKGFVETLKD---GAIDDKDVATKFLNIIEVEVER 395

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ L+ND+L L+ ++   M +    +V+ +++ E  + +  K  + +I++ V     L  
Sbjct: 396 LVRLINDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKDIQLDVKVQEGLEM 455

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +  R  L QIF  ++ NA+ ++ +   V +   + +      VK+ G  IPE   + +F
Sbjct: 456 NIY-RDWLKQIFINLIDNAIVYNKENGKVWVTVEKSDSTVTIKVKDTGIGIPEKEIERIF 514

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF     +G+ R   G GLGLSIV+  + L+GG V + S +   +     IP
Sbjct: 515 ERF-YRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566


>gi|310822652|ref|YP_003955010.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395724|gb|ADO73183.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 827

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LT+ N  L++ + +K+  +   S++LR+PL  ++G   LL  S   ++ ++Q Q +E 
Sbjct: 311 RELTDANRRLKELNRLKDEIIAVCSHDLRAPLQVLLGHGRLLLES---TITAEQKQSIEA 367

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      +L LV  +L+    +A  + +    + +  L  E    +     +  + ++  
Sbjct: 368 IIRQGRKILGLVESLLEKGKGEAARLSIEPRRLDMAVLCKESTHELNILAAQRGVTLRAE 427

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFI-FSVKNNGS 728
           +   L   + D  +L ++   +++NA+  +     V ++A    R +GD +  +V+++GS
Sbjct: 428 APESL-MLIGDEVKLHEVLQNLITNAIHHAKDSGRVTVRALRLTRPDGDAVKITVQDDGS 486

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            IP D    VF+R+     R   +G GLGL+I + F+ LHGG +   S  EG
Sbjct: 487 GIPPDELHLVFDRY-----RHGPKGTGLGLAICKEFVELHGGEIWAESPPEG 533


>gi|301161517|emb|CBW21057.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 671

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 13/238 (5%)

Query: 549 VRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++  + L E  E LRKA E       +K +F+Q +S+E+R+PL +I+GF+ +L       
Sbjct: 421 IQQNKELVENGEELRKAKEQAENASRMKTTFIQSMSHEIRTPLNSIVGFSQVLSNYFKEE 480

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIAT 660
            N +  ++   I  SS+ LL L+ND+LD++ +D   I+  +    + N  L  ++++  +
Sbjct: 481 DNDEIKEFASIIEISSSNLLRLINDVLDISYLDQSEILPYDKPEDINNCCLLSIERTRNS 540

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF 719
              E ++R +  S G L   + + +R+ QI + +L NA+ F+ KG+ T+    +      
Sbjct: 541 IKKEVSLRFEP-SCGPL-MILTNPERVAQILTHLLHNAIKFTDKGNITLAYTISPTEKQI 598

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +++V + G  IP +  + VF RF       Q  G GLGL I        GG + I  +
Sbjct: 599 VYTVTDTGKGIPVEQQEYVFERFAKLNDFSQ--GTGLGLPICRIIAEKLGGSLIIDKT 654


>gi|332524684|ref|ZP_08400883.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332107992|gb|EGJ09216.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 856

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 120/231 (51%), Gaps = 9/231 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D +K+ F+   ++ELR+P+ ++ GFT+LL    +     ++   ++ I   +++L+N+
Sbjct: 611 EVDRMKSEFLSTAAHELRTPMVSVFGFTELLLRRPVS--EERRRDMLQTIHRQASLLINM 668

Query: 624 VNDILDLATVDAGIMK-LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           VN++LDLA ++A   K L      L+ L+ +    +  +   + ++I V     +     
Sbjct: 669 VNELLDLARIEARQGKDLKREPCRLDSLVTQAVGPMLIQGGAHELQIDVAHPDCV--LDV 726

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK--NNGSSIPEDMCKSV 738
           D ++  +  + +LSNA+ +S  G T+++  ++   +G+    V+  ++G  +  +    V
Sbjct: 727 DPEKTNRALTNVLSNAVKYSPDGGTIVVTTQSGELHGEPAVGVRVTDHGIGMTSEQLARV 786

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF      G   G GLG+S+V+  + L GG V ++S+    TT+   +P
Sbjct: 787 FERFYRADPSGNIPGTGLGMSLVKEIVELQGGRVDVASTPGRGTTVTLWLP 837


>gi|206580762|ref|YP_002236509.1| putative sensor protein EvgS [Klebsiella pneumoniae 342]
 gi|206569820|gb|ACI11596.1| putative sensor protein EvgS [Klebsiella pneumoniae 342]
          Length = 1080

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 126/246 (51%), Gaps = 20/246 (8%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK++A+ +A + K+ F+  +S+ELR+P++ I+GF +LL   +L     K++  +E   ++
Sbjct: 586 EKDKAI-QATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNGGQRKEA--IELAGST 642

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-------VKQSIATKMHENNIRI 669
           +  LL L+ +ILD+  +++G  ++      +  L+++       + Q     +H +N   
Sbjct: 643 AQTLLGLIGNILDIDKIESGKYQITPQWSDVAQLVSQQCHTFDALAQQKGIVLHHHN--- 699

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKN 725
             + +G +     D Q L QI + ++ NA+ F+++G    S  +++A    G+   +V +
Sbjct: 700 -ALQEGIM--LWLDPQALRQILNNLIGNALKFTAEGAIQVSCRLVQADETQGELTLTVSD 756

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           +G  I E    ++F+R+       Q+ G GLGL I +  + L  G + + S     TT  
Sbjct: 757 SGCGISEAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSHPGVGTTFT 816

Query: 786 CRIPSK 791
             +P K
Sbjct: 817 ITLPVK 822


>gi|189464152|ref|ZP_03012937.1| hypothetical protein BACINT_00488 [Bacteroides intestinalis DSM
           17393]
 gi|189437942|gb|EDV06927.1| hypothetical protein BACINT_00488 [Bacteroides intestinalis DSM
           17393]
          Length = 623

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 23/236 (9%)

Query: 556 TEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           TE  E LR     A   K+ F+ ++S+E+R+PL  + GF+ LL    L   +S + Q  +
Sbjct: 379 TETLEQLRHNAENATRAKSIFLSNMSHEIRTPLNALSGFSALLTEEGLD--DSTRRQCTD 436

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYS-----TIVLN--DLLNEVKQSIATKMHE 664
            I  +S +LL L+ND++DL++++ G M+ + +      I  N  D + +VKQ+ A  + E
Sbjct: 437 IIQQNSELLLKLINDVIDLSSLEFGKMQFSIAEHDAVAICRNVTDTVGKVKQTQAELLFE 496

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            ++    I          D  RL Q+   +L NA  F+  GS  +    +     +FSV 
Sbjct: 497 TSLEELYIE--------TDDSRLQQVLINLLINATKFTPDGSITLKLEKQSEKMALFSVT 548

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + G  IP++   S+F RF       Q  G GLGLSI +  I   GG + I     G
Sbjct: 549 DTGCGIPKEKQASIFQRFEKLDENAQ--GSGLGLSICQLIIEHIGGKIWIDPDYTG 602


>gi|148657589|ref|YP_001277794.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569699|gb|ABQ91844.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 471

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 124/246 (50%), Gaps = 20/246 (8%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQY--V 610
           A  + +  L +A + +      ++++LR+PL+ + G+T+ L+  ++ GS    Q  +  V
Sbjct: 213 AFNQMSADLSRAIQARRQMTADLAHDLRTPLSILRGYTEGLQEGRISGSPTIYQIMHGEV 272

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E++         L++D+  L+  DAG + LN   +    LL     +   +  +  + I+
Sbjct: 273 EHLQ-------RLIDDLRLLSLADAGALSLNRRPVDPRALLERAALAHMVQAEQQGLTIR 325

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGS 728
           V +   L S   D  R+ Q+ + +++NA+  +++G  V+   AR+ G    I  V++ GS
Sbjct: 326 VEASETLPSVAVDTDRMAQVLNNLVANALRHTARGEIVL--TAREEGAQRVILEVRDTGS 383

Query: 729 SI-PEDMCKSVFNRFV----SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            I PED+ + +F+RF     S +  G  +  GLGL+I ++ I  H G +S++S     TT
Sbjct: 384 GIAPEDLPR-IFDRFYRADPSRSREGGHQSAGLGLAIAKAIIEAHNGAISVASRVGEGTT 442

Query: 784 INCRIP 789
               +P
Sbjct: 443 FTITLP 448


>gi|256004828|ref|ZP_05429803.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255991278|gb|EEU01385.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316940734|gb|ADU74768.1| histidine kinase [Clostridium thermocellum DSM 1313]
          Length = 501

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+ + +      K+ F+  +++E ++PL  I      ++      L  +  +Y+  I  +
Sbjct: 221 EQKKYIENLARFKDEFLYGITHEFKTPLVVISSALQAIEALCRDELTDRVKKYLNRIKQN 280

Query: 617 STILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +   + LVN++LD+A ++AG   I K N   + L  L+ E   S++       +++   S
Sbjct: 281 TFRQIRLVNNLLDIARIEAGHIKIFKRNLDIVALTRLITE---SVSMFADLKGVQLLFYS 337

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +        D ++  +I   +LSNA+ F+ K  +V ++ +   G     VK++G  IP+D
Sbjct: 338 NIDKKIIAIDEEKYERIMLNLLSNAIKFTPKDRSVYVEVSAKEGCVEIKVKDSGIGIPKD 397

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             K++F RF  V ++      G G+GLS+V  F+N  GG +S++S +   +T    +P
Sbjct: 398 KIKTIFERFGQVDSSLSRNAEGTGIGLSLVRMFVNAMGGEISVTSEENIGSTFTVTLP 455


>gi|148258028|ref|YP_001242613.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146410201|gb|ABQ38707.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 981

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 130/249 (52%), Gaps = 9/249 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F +++   R E  L +      +A   K   +  +S+E+R+PL  IIGF +++   + G+
Sbjct: 721 FRDLSQLRRGESELLQARRVADRAASAKADMLARISHEVRAPLNAIIGFAEVMIGERFGT 780

Query: 602 L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           L N++ ++Y++ I AS   +++L++D+L+L+ ++ G ++L +++  LN+L   V+  +A 
Sbjct: 781 LGNTRYAEYMKDIRASGERVVSLIDDLLELSRIETGRLELAFTSQNLNEL---VEGCVAV 837

Query: 661 -KMHENNIRIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDN 716
            + H N  RI + +     L   +AD + L QI   ++S ++  ++ G  VI+  A  D 
Sbjct: 838 MQPHANRARIIIRTSLSQSLPPVIADARALRQIAMNLISTSISLANAGGQVIVSTATSDF 897

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
           G+ +  V++ G  + +    +    F + A   Q   G GL LS+ ++ +  +     I 
Sbjct: 898 GEVVLRVRDTGHGLNDQAVAAALEPFRATAGPEQGHDGSGLSLSLTKALVEANRAQFHIK 957

Query: 776 SSDEGVTTI 784
           ++ +  T +
Sbjct: 958 AAPKSGTLL 966


>gi|323466877|gb|ADX70564.1| Sensor protein [Lactobacillus helveticus H10]
          Length = 485

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + NE +R  +  ++ F+   ++E+R+PLT I G  + L+   +   +  +S  ++ 
Sbjct: 238 KALKQSNEEVRAQENRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKS--IDL 295

Query: 613 ISASSTILLNLVNDILDLATVDAG---IMKLNYSTI-VLNDLLNEVKQSIATKMHENNIR 668
           +   +  L+ LVN+ LD   +      ++K ++  + +L DL +++KQ+      + N  
Sbjct: 296 MQRETKRLVRLVNENLDYEKIRNNQIMLIKTDFDAMPILRDLKSQLKQNAG----KANDE 351

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I V    KL  + ADR R  Q+   ++ NA+ F+  G   I     ++   IF VK+NG 
Sbjct: 352 ISVTGPEKLPIY-ADRDRFTQVMVNLVQNAIQFTHDGQIEISGKRLEHASEIF-VKDNGI 409

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISS 776
            + +D  K +F RF        R G    GLGL+IV S I  HGG V + S
Sbjct: 410 GMSKDQTKYIFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVKVDS 460


>gi|256838505|ref|ZP_05544015.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739424|gb|EEU52748.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 769

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----TSKLGSL 602
           D +  ++   ++NEAL  +   +   V  +++ELR+PLT I G+  L++    T K G+ 
Sbjct: 278 DLIEQQKQSIKQNEALIAS---RKKAVHTITHELRTPLTAITGYAGLMRKDCNTDKTGT- 333

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                 Y+  I  SS  +  ++N +L+   +D G  + N+S   ++ + + ++       
Sbjct: 334 ------YIRNIQESSDRMREMLNTLLNFFRLDNGKEQPNFSACRISAITHTLETEFMPIA 387

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               + +  I   K      D++R+LQI + +LSNA+ F+  GS V L+A  DNG     
Sbjct: 388 INKGLTL-TIHCHKDAFVCTDKERILQIGNNLLSNAIKFTENGS-VSLRADYDNGLLKLI 445

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G+ + E+  + VF  F   ++   + G GLGLSIV+  + + GG + + S     +
Sbjct: 446 VEDTGTGMTEEEQQRVFGAFERLSNAAAKDGFGLGLSIVQRIVTMLGGTIRLESDKGKGS 505

Query: 783 TINCRIP 789
                IP
Sbjct: 506 RFTVEIP 512


>gi|224538238|ref|ZP_03678777.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520170|gb|EEF89275.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1472

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L  K    ++  +IK  F  ++S+ELR+PLT I G  +  +  + G LN ++ + +  + 
Sbjct: 929  LKHKVSVEQEISDIKLRFFTNISHELRTPLTLIAGPVE--QVLQHGKLNDEEREQLVLVE 986

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +    MK+    I L   +  + +S  +   E+ I   +  D
Sbjct: 987  RNTNRMLRLVNQILDFRKIQNKKMKMRVQQIDLIPFIRHIMESFNSLADEHQIDFSM--D 1044

Query: 675  GKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             K+ S    AD  +L +I   +LSNA  ++ +G  + +    +  D I +V++ G  I E
Sbjct: 1045 TKVSSLKIWADSDKLEKILFNLLSNAFKYTPQGKQIKVMVQEEEKDVILAVEDQGIGIAE 1104

Query: 733  DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  KS+F RF  + + +   +   G+GLS+V+  I++H G +SI S
Sbjct: 1105 NKQKSLFVRFENLVDKNLFNQASTGIGLSLVKELIDMHHGSISIRS 1150


>gi|196233948|ref|ZP_03132785.1| integral membrane sensor signal transduction histidine kinase
           [Chthoniobacter flavus Ellin428]
 gi|196221997|gb|EDY16530.1| integral membrane sensor signal transduction histidine kinase
           [Chthoniobacter flavus Ellin428]
          Length = 695

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  FV +VS+EL++PLT+I  F +L++    GS   K  QY+  I   +  L  L+N++L
Sbjct: 465 KTDFVSNVSHELKTPLTSIRMFAELMQNGNGGS-TEKYPQYLRIIMVEAERLTRLINNVL 523

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D A ++    + +   + L  ++    +  A  + E+    +  +       + D   L 
Sbjct: 524 DFARLERKQKQFDKKPLDLRSVVERTWEGHALHLQESGFTTRWQAAPGPYPVIGDEDALA 583

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           QI   +LSNA  ++ +   V L +  D G    SV + G  +P    + +F  F   AH 
Sbjct: 584 QILVNLLSNAEKYAGERKEVELHSYLDGGHACVSVLDRGIGVPPGDERKIFESFY-RAHD 642

Query: 749 GQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               G+   GLGL++ +     HGG +      EG +    R+P
Sbjct: 643 SLSSGIQGSGLGLTLAQQLAREHGGEILYQPRLEGGSNFTLRVP 686


>gi|169334577|ref|ZP_02861770.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259294|gb|EDS73260.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM
           17244]
          Length = 928

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 127/238 (53%), Gaps = 13/238 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   AL +  +  + A+E K +F+  +S+++R+P+  I+G   + K +   +   K    
Sbjct: 400 RQRIALEDAYQTAKVANEAKTNFLSSMSHDIRTPMNAIMGMAAIAKMNT--NEPDKVRDC 457

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I+ SS  LL+L+N++LD++ +++G + L    I L++L+  V       + E N ++
Sbjct: 458 LNKINISSKHLLSLINEVLDMSKIESGKINLMLEKIDLSELVENVADICKPLVAEKNQQL 517

Query: 670 KVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDN-GDFIF 721
           K +S G++     +AD  RL Q+   ++SNA+ ++ +G T+      L +A DN G + F
Sbjct: 518 K-MSVGRVRHEKVIADGDRLQQVLLNLMSNAIKYTPEGGTITFRINELSSAIDNLGQYEF 576

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +NG  + ED    +F  F    ++   + +G GLG++I ++ + +  G + + S+
Sbjct: 577 IFIDNGIGMAEDFIPHIFEPFSRAEDSRISKIQGTGLGMAITDNIVRMMNGIIEVQST 634


>gi|153933939|ref|YP_001385667.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153936029|ref|YP_001389073.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|152929983|gb|ABS35483.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152931943|gb|ABS37442.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 448

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +    +++  E +  F+ ++S++LR+PLT+I+GF +LLK  K   +  ++  Y+  I
Sbjct: 215 ALNDMGGKIKENKENEKEFLLNISHDLRTPLTSILGFLNLLKQKKY-DIEEEREGYINTI 273

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L  L+++    +T+    +KLN   I L ++L ++      ++ EN I + +  
Sbjct: 274 EEQSLYLKTLIDEFFQFSTLKWKNVKLNKENINLQEILRQISDGFYPQLKENKISVSMNF 333

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG-SSIPE 732
             K      D  + +++   ++SNA+ +S KG+ + L    +    +    N    ++ E
Sbjct: 334 PEKSLYKEVDVDKFMRVLENVISNAIKYSHKGTEISLNLYENKDKIVMEFWNTPIEALKE 393

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           D    +F RF         +G GLGLSI    + LHGG +     +E +  I
Sbjct: 394 DELDFLFKRFYKKDLSRGNKGAGLGLSIALEAVKLHGGELYAVMKNERLGII 445


>gi|44004552|ref|NP_982221.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|190015080|ref|YP_001966749.1| sensor histidine kinase [Bacillus cereus]
 gi|190015346|ref|YP_001967073.1| sensor histidine kinase [Bacillus cereus]
 gi|218848250|ref|YP_002455135.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|229164673|ref|ZP_04292537.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296506625|ref|YP_003667859.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
 gi|42741618|gb|AAS45063.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|116584756|gb|ABK00871.1| sensor histidine kinase [Bacillus cereus]
 gi|116585027|gb|ABK01136.1| sensor histidine kinase [Bacillus cereus]
 gi|218540301|gb|ACK92697.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|228618753|gb|EEK75715.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296327212|gb|ADH10139.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
          Length = 455

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 5/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+  V++ELR+PLT I G+ D++  +K+ + +  Q  Y+  I   +  +  LV D+ 
Sbjct: 235 RGEFLASVAHELRTPLTYIRGYADIILKTKMSTQD--QKHYLSIIKEEADHVTGLVQDLF 292

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +LA ++     +N     L DLL  +   I     E NI I + S  +    + D QR  
Sbjct: 293 ELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHI-IFSCPEDLVLLLDEQRFE 351

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   +L+NA   S   S + +            VK+ G  IPE     +F RF  V  +
Sbjct: 352 QVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDEGEGIPEKDLPHIFERFYRVDKS 411

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 G GLGL+IV+  I LH G +S+ S
Sbjct: 412 RTRATGGSGLGLAIVKEIIELHRGSISVKS 441


>gi|56752231|ref|YP_172932.1| two-component sensor histidine kinase [Synechococcus elongatus PCC
           6301]
 gi|81300681|ref|YP_400889.1| histidine kinase [Synechococcus elongatus PCC 7942]
 gi|56687190|dbj|BAD80412.1| two-component sensor histidine kinase [Synechococcus elongatus PCC
           6301]
 gi|81169562|gb|ABB57902.1| histidine kinase [Synechococcus elongatus PCC 7942]
          Length = 482

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 12/231 (5%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           E +  FV +VS+EL++PLT I G+   LL+     +LNS Q+Q +E  SA +   + ++ 
Sbjct: 256 EQQQQFVGNVSHELKTPLTVISGYLQSLLRRGD--NLNSYQNQALETASAEAERTIRMLQ 313

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--AD 683
           D+LDLA VD+G +       VLN L+ EV      +M       ++I        V  AD
Sbjct: 314 DLLDLARVDSGNLHFRLMPTVLNTLIAEV-----AEMTRRVTGRQIIMQTPKSEIVVYAD 368

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           + RL Q    +L NA  +S++   V +   + N   +  + + G  IP      +F RF 
Sbjct: 369 QNRLEQALINLLDNAAKYSNQDQVVYINLEQSNQQTLIHIIDQGVGIPLAHQSRIFERFY 428

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            V  A    R G GLGL+I +S I    G +++ S     +T    +P+ E
Sbjct: 429 RVDEAMTRSRDGTGLGLAIAKSLIEGMQGKITLRSKLGEGSTFTIILPNWE 479


>gi|89074574|ref|ZP_01161046.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34]
 gi|89049678|gb|EAR55237.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34]
          Length = 971

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EA  KA+  K+SF+  +S+E+R+P+  ++G   LL  ++L    S+Q +Y++ I+ S 
Sbjct: 460 RDEA-EKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQL---TSQQKRYLDVINRSG 515

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             LL+++NDILD + ++AG + +  S   +  ++ +V   +  +     I ++  IS   
Sbjct: 516 ETLLDILNDILDYSKIEAGHLDIRSSNFSVVRMVTDVSNMLEGRSLAKRIGLECHISPQV 575

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD-FIFSVKNNGSSIPEDM 734
            G +  D  R+ Q+   ++ NA+ F+  G  ++ ++   D  D  +FSVK+ G  I E+ 
Sbjct: 576 EGVWFGDESRIRQVLVNLVGNAIKFTDTGKVSIFVEPHPDMPDELLFSVKDTGIGIDEEA 635

Query: 735 CKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +F+ F  + A R    G GLGL+I +  +    G + + S
Sbjct: 636 QSLLFSAFQQAAAGRKSIEGTGLGLAISKHIVAAMDGEIGLES 678


>gi|325274521|ref|ZP_08140585.1| two-component sensor protein [Pseudomonas sp. TJI-51]
 gi|324100338|gb|EGB98120.1| two-component sensor protein [Pseudomonas sp. TJI-51]
          Length = 1212

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 125/247 (50%), Gaps = 15/247 (6%)

Query: 555 LTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYV 610
           +TE  +A ++AD     K++F+  +S+E+R+P+  +IG  +L +K +  G ++       
Sbjct: 696 VTELRQAKQQADNANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGWVDRSALALA 755

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            +   S+  LL L+ DILD+  +++G + L    + L  L+  V +    +  +  + ++
Sbjct: 756 HH---SAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVGRMFDGQARQKGLALE 812

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVK 724
           VI         + D  R  Q+ S ++SNA+ F+  G   I  +  D            V+
Sbjct: 813 VIIEPAARCHALLDPLRFKQVLSNLVSNAIKFTEHGQVRICVSLLDEAPGRPAMLDLEVR 872

Query: 725 NNGSSIPEDMCKSVFNRFV-SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I  D  + +FN F+ +N H +G R G GLGL+I  +  ++ GG ++I S ++  T
Sbjct: 873 DSGIGIHPDDLERLFNPFIQANPHSQGARAGTGLGLAICRNLCDMMGGSLTIKSLEDVGT 932

Query: 783 TINCRIP 789
            +  ++P
Sbjct: 933 QVRLKMP 939


>gi|218700495|ref|YP_002408124.1| hybrid sensory histidine kinase TorS [Escherichia coli IAI39]
 gi|218370481|emb|CAR18288.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Escherichia coli IAI39]
          Length = 914

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K++F+  +S+E+R+PL  I+G   LL  +   +LN+ Q   +  I+ S   LL +
Sbjct: 439 KASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP--ALNT-QRDDLRAITDSGESLLTI 495

Query: 624 VNDILDLATVDAGIMKLNYS--TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
           +NDILD + ++AG   ++ S        LL    Q ++ ++    I +   I+D    + 
Sbjct: 496 LNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIHLATAIADDVPTAL 555

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D +R+ Q+ + +LSNA+ F+ +G  ++L++  D   ++  V+++G  I       +F 
Sbjct: 556 MGDPRRIRQVITNLLSNALRFTDEGQ-IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQ 614

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV  + +  R G GLGL+I         G +S +S+ E  +    R+P
Sbjct: 615 PFVQVSSK--RGGTGLGLTISSRLAQAMDGELSATSTPEVGSCFCLRLP 661


>gi|254244130|ref|ZP_04937452.1| hypothetical protein PA2G_04970 [Pseudomonas aeruginosa 2192]
 gi|126197508|gb|EAZ61571.1| hypothetical protein PA2G_04970 [Pseudomonas aeruginosa 2192]
          Length = 998

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 18/223 (8%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD  K+ F+  +S+E+R+PL  I+G  +LL+ + LG    +  Q +  ++ +   LL ++
Sbjct: 503 ADRAKSRFLATMSHEIRTPLNGILGMAELLREASLG---ERDRQRLRALATAGEGLLAIL 559

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGS 679
           N++L  A ++            L  LL +V   +  +  EN  R+ +     + DG  G+
Sbjct: 560 NEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGA 619

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                Q L Q+ + +L NA+ F+  G        L  +  +     SV ++G  IPE+M 
Sbjct: 620 ----EQFLRQVLTNLLGNAVKFTEAGEVRVRVERLVRSAGSERLRLSVADDGIGIPEEMR 675

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F RF        RR  G GLGL+I +  +   GG + + S
Sbjct: 676 ERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVES 718


>gi|88812847|ref|ZP_01128092.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nitrococcus mobilis Nb-231]
 gi|88789917|gb|EAR21039.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nitrococcus mobilis Nb-231]
          Length = 1656

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 116/240 (48%), Gaps = 7/240 (2%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+  R ER +  + + L +    K+ F+  +++ELR+PL  I  F  L    + G  N
Sbjct: 1265 DITERKRMERQIQGQAKELAEVSRRKDEFLAMLAHELRNPLAPI--FNALQLIGQKGE-N 1321

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   +  E I      +  L++D+LD++ + +G ++L    + LN ++    + +   + 
Sbjct: 1322 ALHEEAREIIERQVRHMARLIDDLLDVSRITSGRIRLRPERVDLNTIVERAVERMRPLID 1381

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
                ++ +    +     AD  RL QIF  +L NA  +S+    + L+  RD+   I  V
Sbjct: 1382 RRGQQLSIEPAQQPIWLDADPTRLEQIFGNLLDNASKYSTNNGHIDLRIERDDHRAISRV 1441

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEG 780
            +++G  I  D    +F  F   A R   R   G+G+GL++V+S + +HGG V   S   G
Sbjct: 1442 RDDGEGIAADTLPRIFELF-GQAERSLERSEGGLGIGLALVKSLVEMHGGTVDAYSEGLG 1500


>gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 858

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 21/242 (8%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+A  E  +   +A + K+ FV  +S+E+R+PL  IIG   LLK S     +  Q  Y+ 
Sbjct: 466 EKAYAEAIQRAHEASKAKSEFVARISHEIRTPLNAIIGMNYLLKQS---CTDPVQESYLR 522

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL------LNEVKQSIATKMHEN 665
            +  S+  LL+++ND+LD + +++G +++  +T+ +  L      +NE K   A +  E 
Sbjct: 523 KMELSAKNLLSIINDVLDFSKIESGKLEIEKNTLSIEKLVRDVVSINEPKAKAANESFET 582

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIF 721
           +     I  G     + D  R+ QI   ++SNA+ FS  G+  I     +   +N   +F
Sbjct: 583 H-----IDPGIPDVLIGDTLRISQIMLNLVSNAVKFSHHGTIKIEVLCERVHGENVTLLF 637

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  + +     +F  F        R+  G GLGLSI +  + L  G +  + ++E
Sbjct: 638 SVRDQGIGMSQQQLDKLFIPFTQADGSTTRKYGGTGLGLSICKMLVELMHGEI-WAVTEE 696

Query: 780 GV 781
           GV
Sbjct: 697 GV 698


>gi|288957576|ref|YP_003447917.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909884|dbj|BAI71373.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 704

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 22/254 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--KLGSLNSKQSQYV 610
           R L EK +A   A + K+ F+ ++ +EL  PLT I+  +  L +   +LG   ++ +  V
Sbjct: 412 RLLREKAKA-EAASQAKSDFLVNMGHELHGPLTEIVNASQTLMSDLHRLGV--AELAADV 468

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIR 668
           E+I  +   L  LV+ ILD A V+AG+M +      +N LL E ++    A  ++ N + 
Sbjct: 469 EHIQWTGEQLTGLVDAILDYAKVEAGVMDVCLQDFDVNRLLAEARERSMPAADLYGNALD 528

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVK 724
           +   +   LG   +D  +L Q    +L NA  F+  G TV L A +   D    + F+V 
Sbjct: 529 LSAPA--GLGQMHSDFNKLRQTLLNLLDNACKFTQDG-TVTLSAEKLERDGARWYRFTVA 585

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--------RGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G   P      +F  FV  A         +G+ RG GLGL++V  +  + GG + ++S
Sbjct: 586 DTGRGFPTAQTGRLFQPFVQGAGNGAVATRGQGKPRGAGLGLTLVGHYTAMLGGDIEVAS 645

Query: 777 SDEGVTTINCRIPS 790
                T I   +P+
Sbjct: 646 EPGQGTRITIALPA 659


>gi|288871250|ref|ZP_06410080.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479]
 gi|288864174|gb|EFC96472.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479]
          Length = 720

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 135/250 (54%), Gaps = 8/250 (3%)

Query: 548 SVRAERALTEKNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +++ E+   EK +A  L K ++++ + ++ +S++LR+PLT+I G   +L  +       K
Sbjct: 469 ALKNEQTTREKEQAAVLAKNEQLRANLLRAISHDLRTPLTSISGNAGVLLANDTVIPQEK 528

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + Q    I   S  L+NLV ++L +  ++ G M L     +++D++ E    I  K  E+
Sbjct: 529 RRQLYGDIYDDSLWLINLVENLLAVTRIEDGSMNLRLKPELMDDVVAEALHHINRKSVEH 588

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS-VK 724
           +  I V    +L     D + ++Q+   I+ NA+ ++ +GST+ ++    +GD++ + + 
Sbjct: 589 H--ITVAQSNELALARMDGRLIVQVVINIVDNAIKYTPQGSTITVRTF-TSGDWVVTEIS 645

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  I +++   +F+ F +++ +    RR +GLGL++ +S I  HGG + +  ++   T
Sbjct: 646 DNGPGISDEVKLRIFDMFYTSSTKIADSRRSLGLGLALCKSIITAHGGTIEVRDNEPEGT 705

Query: 783 TINCRIPSKE 792
                +P +E
Sbjct: 706 VFCFTLPIEE 715


>gi|260102560|ref|ZP_05752797.1| sensor histidine kinase [Lactobacillus helveticus DSM 20075]
 gi|260083635|gb|EEW67755.1| sensor histidine kinase [Lactobacillus helveticus DSM 20075]
          Length = 485

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + NE +R  +  ++ F+   ++E+R+PLT I G  + L+   +   +  +S  ++ 
Sbjct: 238 KALKQSNEEVRAQENRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKS--IDL 295

Query: 613 ISASSTILLNLVNDILDLATVDAG---IMKLNYSTI-VLNDLLNEVKQSIATKMHENNIR 668
           +   +  L+ LVN+ LD   +      ++K ++  + +L DL +++KQ+      + N  
Sbjct: 296 MQRETKRLVRLVNENLDYEKIRNNQIMLIKTDFDAMPILRDLKSQLKQNAG----KANDE 351

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I V    KL  + ADR R  Q+   ++ NA+ F+  G   I     ++   IF VK+NG 
Sbjct: 352 ISVTGPEKLPIY-ADRDRFTQVMVNLVQNAIQFTHDGQIEISGKRLEHASEIF-VKDNGI 409

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISS 776
            + +D  K +F RF        R G    GLGL+IV S I  HGG V + S
Sbjct: 410 GMSKDQTKYIFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVKVDS 460


>gi|288941215|ref|YP_003443455.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896587|gb|ADC62423.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 905

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 157/384 (40%), Gaps = 60/384 (15%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG- 496
           E +D+L  GV V GPD  I L+NP    L     ++L    H R       R+  E DG 
Sbjct: 368 ELLDNLHVGVVVHGPDTAILLANPMASRLLGLAVDQL----HGRTAMDPAWRFVRE-DGT 422

Query: 497 -------------------WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                               DL   I+   D     +Q     L D        P    Q
Sbjct: 423 PMPLAEYPVTRVVNTGVIVQDLVLGILEPEDIRLTWVQCEAYPLWDE-------PGRLQQ 475

Query: 538 TMLTFVNVTDSVRAE------------------RALTEKNEALRKADEIKNSFVQHVSYE 579
            ++TF ++T    AE                  + L+E  +A   A+  K++F+ ++S+E
Sbjct: 476 IVVTFFDITARKSAETELERYRQHLESLVASRTQELSEARDAAEAANRAKSAFLANMSHE 535

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIG   LL+       + +   ++  +  ++  LL +++DILDL+ ++AG + 
Sbjct: 536 IRTPMNAIIGLNHLLQHE---VTDPRAHDWLTKVGEAAAHLLRIIDDILDLSKIEAGHLT 592

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNA 698
           L        +L+      +  +  +  +R+   I+     S V D  RL QI    +SNA
Sbjct: 593 LETGEFSPRNLIERTFSLLGDRARQKGLRLHAAIAPDVPESLVGDALRLQQILLNFVSNA 652

Query: 699 MDFSSKGSTVILKAAR-DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + FS +G   +    + ++ +++     V + G  +  +    +F  F        RR  
Sbjct: 653 IKFSEQGEIRVRAWTQAEDAEWMRLHLDVADQGIGLTAEQQARLFQPFAQGDESTTRRYG 712

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G GLGL+I     NL  G V + S
Sbjct: 713 GTGLGLAIARRLANLMQGEVGVVS 736


>gi|228989704|ref|ZP_04149686.1| hypothetical protein bpmyx0001_4740 [Bacillus pseudomycoides DSM
           12442]
 gi|228770038|gb|EEM18620.1| hypothetical protein bpmyx0001_4740 [Bacillus pseudomycoides DSM
           12442]
          Length = 400

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 3/232 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +R + E +  FV   S+ELR+PL  I   TD+L  S   ++  K    +  IS     L 
Sbjct: 169 IRNSWEKQQQFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAID-ISTISKECRRLS 227

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV ++L LA  D+  +++      L++LL EV             ++ +  + K+ SF+
Sbjct: 228 KLVANLLLLARSDSNQIEMYKKEFALDELLTEVVDPYTEIAAYQEKKMTLEIESKV-SFI 286

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR+R+ Q+   +L NAM ++  G T+ +   + N      VK+NG  I E+    +F+R
Sbjct: 287 GDRERIHQMVVILLDNAMKYTDVGGTIQVACMQTNSSITIQVKDNGIGIKEEEIPKLFDR 346

Query: 742 FV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F   +  R +  G GLGLSI    +  H G + + S     T     +P  +
Sbjct: 347 FYQGDKARTKAEGAGLGLSIASWIVEKHHGKIKVESKMNEGTCFEVILPKNQ 398


>gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1681

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 131/258 (50%), Gaps = 18/258 (6%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++TD+   +  L    +A   A+  K+ F+ ++S+E+R+P+  I+G + L+  ++L   
Sbjct: 936  LDITDTKSIQDELAIAKDAAEAANRAKSDFLANMSHEIRTPMNAILGMSYLVLQTEL--- 992

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +SKQ  YV  +  ++  LL ++NDILD + ++A  M +  +   L+D+L+ +   ++ K+
Sbjct: 993  SSKQRDYVGKVHQAAGSLLGILNDILDFSKIEAEKMDIECTVFDLDDVLSNLANVVSYKV 1052

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNG 717
             E N+        +L  +   D  RL QI     +NA+ FS   S+V+L    +   +  
Sbjct: 1053 EEKNMAFIFDLPPELPRYYHGDGLRLGQILINYCNNAVKFSHNDSSVVLSCQTQQQGEQV 1112

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  F V++ G  IPE     +F  F  V  +   +  G GLGL+I +   +L GG V   
Sbjct: 1113 ELTFCVEDFGIGIPEQKQGVLFGSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEV-WC 1171

Query: 776  SSDEGV-------TTINC 786
             S+ GV        T+NC
Sbjct: 1172 ESELGVGSRFYLRLTLNC 1189


>gi|329890253|ref|ZP_08268596.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845554|gb|EGF95118.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 839

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 118/235 (50%), Gaps = 8/235 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R L +       A+  K+ F+ ++S+E+R+PL  ++   ++L T     L  +  + 
Sbjct: 441 RQSRRLKKAQLHAEAANRAKSEFLANMSHEIRTPLNGVVAMAEVLTTR---DLPERDREL 497

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I +S   L  L++DILD+A +++G + ++ +   L  +  +V    A       + +
Sbjct: 498 VDIIRSSGVTLERLLSDILDVARIESGQVAIDPAPFDLEQVTRDVVALWAPLALGKGVEL 557

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNG 727
           ++  D  L   V  D  RL Q+ + ++SNA+ F+ +G+ V L+A +  G+ + F+V + G
Sbjct: 558 RLDYDPTLPRLVIGDAVRLRQVLTNLISNALKFTQEGA-VTLEAVQGEGERVRFTVTDTG 616

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
                +    +F+RF        R+  G GLGL+I +  + L GG +   S  +G
Sbjct: 617 IGFDAEFKSRIFHRFQQEDGSITRQFGGSGLGLAISDDLVRLMGGELDCESPPQG 671


>gi|325660729|ref|ZP_08149357.1| hypothetical protein HMPREF0490_00089 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472803|gb|EGC76013.1| hypothetical protein HMPREF0490_00089 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 450

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +N    KA E++  F  +VS+EL++PLT+I G+ +++K   +   + K   + E I   +
Sbjct: 208 QNREKEKAAEMRKEFSANVSHELKTPLTSISGYAEIMKNGLVRPEDMK--GFSERIYNEA 265

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           + L+ LV DI+ ++ +D   ++L    + L  L+ E+   +A +  + +IR +V   G+ 
Sbjct: 266 SRLITLVEDIIKISKLDEKSIELEKQEVDLYLLVREICTRLAPQAEKKSIRFEV--SGEH 323

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            S+   RQ L ++   +  NA+ ++ KG  V +            V++ G  IPE+  + 
Sbjct: 324 VSYNGIRQILDEMIYNLCENAVKYNVKGGKVSVWTGNTLEGPKVIVEDTGIGIPEEEKER 383

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           VF RF  V  +H  +  G GLGLSIV+    LH   + ISS+
Sbjct: 384 VFERFYRVDKSHSRENGGTGLGLSIVKHGALLHDAKIQISSN 425


>gi|307592105|ref|YP_003899696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985750|gb|ADN17630.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 816

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 5/233 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A++IK+ F+  VS+ELR+PL  ++G++ LL   +    ++  +Q +  I  ++ +   
Sbjct: 433 QQANQIKDEFLAIVSHELRNPLNAMLGWSQLLHKREFE--DTMVNQAITIIERNALLQKK 490

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ D+LD++ +    + ++   + L  L++ V  ++   +    I I    D        
Sbjct: 491 LIEDLLDISRIIQNRLHISREPVYLIPLIDTVIDTLRPNIKAKAIEISSNLDTSTKPVFG 550

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI   +LSNA+ F+S G  + ++ +++      +V + G  I  +    +F RF
Sbjct: 551 DAYRLEQIVGNLLSNAIKFTSTGGKINVQLSQEGSLAKITVADTGQGISPEFLPFIFERF 610

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIPSKE 792
                +    + G+GLGL+IV   + LHGG V  +S   G   T   ++P+++
Sbjct: 611 RQADPSKTRSQSGLGLGLAIVRHLVELHGGSVYAASPGVGKGATFIVQLPTQD 663


>gi|226357201|ref|YP_002786941.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226319191|gb|ACO47187.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 963

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 7/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L ++ E L +++     F    S++L+ PL  I  FT+LL     G L+SK 
Sbjct: 713 EGARSLTQLAQRTEELERSNRDLEQFAYVASHDLQEPLRTITSFTELLARRYQGQLDSKA 772

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+ +   ++  + +L+ D+L  + V A   +L  + +  + +L ++ + +A  + E+ 
Sbjct: 773 DRYIHFTVDAARRMSSLIQDLLAFSRVGAENHQL--AMVDTSQVLEDITRDLAEDLRESG 830

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVK 724
               V+S   L S  AD  ++ Q+   ++SN + F  +G    V +    +   F F V+
Sbjct: 831 ---AVVSWDSLPSVYADPVQIRQLLQNLVSNGIKFQREGMVPAVHISGHEEGQVFHFQVQ 887

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +NG  I       +F  F    +R + +G G+GL++ +  +  HGG + + S     +T 
Sbjct: 888 DNGIGIDRQYFDRIFTVFQRLHNREKYKGTGVGLALCKRIVERHGGRLWLESKVGAGSTF 947

Query: 785 NCRIP 789
           +  +P
Sbjct: 948 HFTLP 952


>gi|3955036|emb|CAA65047.1| putative sensor kinase [Synechocystis sp. PCC 6803]
          Length = 1138

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 22/235 (9%)

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            A   A+  K  F+  +S+E+R+P+  +IG ++LL  +    LN +Q  YV+ I  S   L
Sbjct: 770  AAEAANRAKGEFLAMMSHEIRTPMNGVIGMSELLIMT---DLNLQQLDYVQTIRQSGETL 826

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
            L ++NDILD + ++A  + L      L  L+  V +         ++ +    D +  + 
Sbjct: 827  LTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPAR 886

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTV----------------ILKAARDNGDFIFSV 723
             + D+ RL QI S ++ NA+ F+ KG  V                IL     +    F++
Sbjct: 887  ILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNL 946

Query: 724  KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++ G  IP D    +F  F  V ++   +  G GLGL I +    + GG ++++S
Sbjct: 947  RDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTS 1001


>gi|328461775|gb|EGF34011.1| histidine kinase [Lactobacillus helveticus MTCC 5463]
          Length = 485

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + NE +R  +  ++ F+   ++E+R+PLT I G  + L+   +   +  +S  ++ 
Sbjct: 238 KALKQSNEEVRAQENRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKS--IDL 295

Query: 613 ISASSTILLNLVNDILDLATVDAG---IMKLNYSTI-VLNDLLNEVKQSIATKMHENNIR 668
           +   +  L+ LVN+ LD   +      ++K ++  + +L DL +++KQ+      + N  
Sbjct: 296 MQRETKRLVRLVNENLDYEKIRNNQIMLIKTDFDAMPILRDLKSQLKQNAG----KANDE 351

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I V    KL  + ADR R  Q+   ++ NA+ F+  G   I     ++   IF VK+NG 
Sbjct: 352 ISVTGPEKLPIY-ADRDRFTQVMVNLVQNAIQFTHDGQIEISGKRLEHASEIF-VKDNGI 409

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISS 776
            + +D  K +F RF        R G    GLGL+IV S I  HGG V + S
Sbjct: 410 GMSKDQTKYIFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVKVDS 460


>gi|325262754|ref|ZP_08129490.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031848|gb|EGB93127.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 899

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 122/243 (50%), Gaps = 19/243 (7%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE-- 611
           AL +  +  + A+  K +F+  +S+++R+P+  I+G       + +   N  + + V   
Sbjct: 373 ALEDAYQTAKVANSAKTNFLSSMSHDIRTPMNAIMGM------AAIAQANLAEPERVRDC 426

Query: 612 --YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I+ SS  LL+L+N++LD++ +++G + L    + L +L+  V       + E  +  
Sbjct: 427 LNKINVSSRHLLSLINEVLDMSKIESGKIDLLPEEVNLPELIQNVSDMCKPLIAEKQLDF 486

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFS 722
           K+ +S  +    + D  R+ Q+   +LSNA+ ++  G TV L+           G F F 
Sbjct: 487 KISVSYVRHEKVITDGDRMQQVLMNLLSNAIKYTPDGGTVSLRIKEIPSITDKKGQFEFI 546

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  +PED    +F+ F    ++   + +G GLG++I E+ + +  G + ++S  E 
Sbjct: 547 VTDDGIGMPEDFIPLIFDPFSRAEDSRISKIQGTGLGMAITENIVRMMNGSIEVTSQMEK 606

Query: 781 VTT 783
            +T
Sbjct: 607 GST 609


>gi|260220546|emb|CBA28192.1| hypothetical protein Csp_A06050 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 640

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 124/250 (49%), Gaps = 13/250 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD +R  R      +A  +A++ K+ F+ ++S+E+R+P+  ++G T LL  S   +LN +
Sbjct: 235 TDELRQAR------DAAEQANQAKSDFLANMSHEIRTPMNGVLGMTGLLLES---NLNKE 285

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  Y   I  S   LL ++NDILDL+ ++AG M+   +   L+ L++ V   +  +  + 
Sbjct: 286 QRDYATSICHSGEALLAIINDILDLSKIEAGRMEFESNPFSLDVLVDSVVSVLRIRAEDK 345

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +   V + +G    +V D  R+ Q+   +L NA+ F+ +G   +      NG   F V+
Sbjct: 346 GVFFSVGLPEGDGMDYVGDSLRIRQVLFNLLGNAVKFTMQGEVRLEIKVITNG-LRFEVR 404

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I ++    +F+ FV       R+  G GLGL I    +    G + + S     +
Sbjct: 405 DSGIGISQEGLARIFSNFVQVDSSTSRKFGGTGLGLVISRKLVEGMNGSMGVESELGQGS 464

Query: 783 TINCRIPSKE 792
             +  +P K+
Sbjct: 465 CFSFELPLKQ 474


>gi|227509079|ref|ZP_03939128.1| sensor histidine kinase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227191466|gb|EEI71533.1| sensor histidine kinase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 391

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 138/262 (52%), Gaps = 14/262 (5%)

Query: 535 NAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           N Q+++  +N + DSV   +++ E+    R  +  K+  + +VS++LR+PLT+I+G+  L
Sbjct: 121 NTQSVVESINALVDSVI--KSMDEE----RAIESSKDELITNVSHDLRTPLTSILGYLGL 174

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +  S      +Y E     +  + +LV+++ +   V      L+ + I L+ ++ +
Sbjct: 175 IQDKQYKS-QEDLLKYTEIAYLKAKQMKSLVDNLFEYTKVKQTGTPLSINRIDLSQMMEQ 233

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--K 711
           +  S   +  ++ ++I      K     AD ++L ++F+ ++SNA+ +   G+ + L  +
Sbjct: 234 LVASFELEAKKSGLQISAQGTEKPLYIEADAEKLGRVFNNLISNAIKYGKGGNHIYLTCR 293

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             + N + +  V N+G  IP+     +F RF  V  +      G GLGL+I +S I+LHG
Sbjct: 294 VGKPN-EAVIHVSNDGPEIPKKSLNQIFERFYRVEGSRNKDTGGSGLGLAIAQSIIDLHG 352

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G++ + +S+  +TT    +P K
Sbjct: 353 GYI-VVTSEYHLTTFAIHLPFK 373


>gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1195

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 155/318 (48%), Gaps = 33/318 (10%)

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAA----IITSFDDERKSLQGTLELLSDSVLEYS--- 529
           G HIR++            G +LFA     +  + + ER+  + TL   +D  + Y+   
Sbjct: 496 GIHIRDLM-----------GDELFAKNEPYMRAALNGERQRFERTLTK-ADGSIGYTWAH 543

Query: 530 IIP-LPNAQTMLTFVNVTDSVR---AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            IP + N Q    FV V+D       +  L ++ +    A+  K+ F+ ++S+E+R+P+ 
Sbjct: 544 YIPDIANGQVRGFFVLVSDITELKLTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPMN 603

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G T L+  ++   L+ +Q  ++  +  +S  L+ ++NDILD + ++AG +++    I
Sbjct: 604 AILGLTRLVLETE---LDPRQRDFLLKVYNASQALMEILNDILDYSKIEAGRVEIEQLPI 660

Query: 646 VLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            + +++         K+ E  +  I  ++         D  RL Q+ + ++ NA+ F+  
Sbjct: 661 SVEEVVRNTMGLFRAKIEEKGLATIMELASSLPAVLQGDPMRLSQVLNNLVGNAVKFTES 720

Query: 705 GST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           G   ++++  +++   +   FSV++ G  + +D    +F  F        R+  G GLGL
Sbjct: 721 GEIRIMVEQIQEDCRTVTLCFSVQDTGIGLDKDETARLFQAFTQADSTISRKYGGTGLGL 780

Query: 759 SIVESFINLHGGHVSISS 776
           +I +  + L GG +S+SS
Sbjct: 781 TICQRLVGLMGGSISVSS 798


>gi|119944685|ref|YP_942365.1| aerobic respiration control sensor protein ArcB [Psychromonas
           ingrahamii 37]
 gi|119863289|gb|ABM02766.1| PAS/PAC sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 753

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 19/254 (7%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    E++ K    K  F+  +S+ELR+PL  I+G + +L   +L    S+Q ++
Sbjct: 238 RDITERKKHQESIDKNIREKTDFISSISHELRTPLNGIVGLSRMLLDEQL---TSEQMKH 294

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ +DI++L  +D   +KL  + I + D ++++K     +  +  + +
Sbjct: 295 LKTIHISAISLGNIFSDIINLDKLDRNRLKLATNKINMLDFISDLKSLSFIQTEQKGLVL 354

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVK 724
                G     +  D  RL Q+   ++SNA+ F+ KG+  I     +  ++  +  F V+
Sbjct: 355 NFEQRGHFPDIIETDDTRLRQVLWNLISNAVKFTQKGTITIRCVCHQLNQNQVELCFEVE 414

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEG--- 780
           ++G  IPED    +F  +          G G+GL++        GG +S+ S   EG   
Sbjct: 415 DSGIGIPEDQLDKIFAMYYQVEGNTFATGTGIGLAVTSKIAQAMGGVISVKSKLGEGSMF 474

Query: 781 --VTTINCRIPSKE 792
               T+NC  P+KE
Sbjct: 475 KLTLTVNC--PAKE 486


>gi|270296951|ref|ZP_06203150.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272938|gb|EFA18801.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 626

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 558 KNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           + EA++    +A + KN F+ ++S+E+R+PL  I+GF+ +L        +  + ++ E I
Sbjct: 381 RQEAMKEKAVQAIQRKNMFLSNMSHEVRTPLNAIVGFSAVLTDEDESFDDESRREFSEII 440

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S  LL L+NDILD +  +   +  N  T     L NEV   + T M    + +++  
Sbjct: 441 KVNSFQLLKLINDILDFSDFENDNITFNIRTHDAVKLCNEV---VETVMASRKLEVEMRF 497

Query: 674 DGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           D  L   +   D  RL Q+   +L NA  F+ +GS V+     D G  +FSV + G  IP
Sbjct: 498 DTDLSVLMLDTDDARLRQVLINLLVNATKFTEQGSIVLELKMADAGTALFSVTDTGCGIP 557

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +    +F RF       Q  G GLGLSI +  +    G + + S
Sbjct: 558 PEKQHLIFERFEKLNDFVQ--GSGLGLSICQLIVKYMNGKLWVDS 600


>gi|238785117|ref|ZP_04629112.1| Aerobic respiration control sensor protein arcB [Yersinia
           bercovieri ATCC 43970]
 gi|238714009|gb|EEQ06026.1| Aerobic respiration control sensor protein arcB [Yersinia
           bercovieri ATCC 43970]
          Length = 778

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 120/232 (51%), Gaps = 10/232 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +S+Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DSEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      +    ++ 
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLTGLLVQPKGLKF 380

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +  +  L    + D  RL QI   ++ NA+ F+ +G  V+      N    F V+++G 
Sbjct: 381 IMEPELPLPEKIITDGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLTFEVEDSGM 440

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
            IPED    +F  +  V +++ G+   G G+GL++ +      GG +++ S+
Sbjct: 441 GIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492


>gi|169350203|ref|ZP_02867141.1| hypothetical protein CLOSPI_00947 [Clostridium spiroforme DSM 1552]
 gi|169292986|gb|EDS75119.1| hypothetical protein CLOSPI_00947 [Clostridium spiroforme DSM 1552]
          Length = 464

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 129/257 (50%), Gaps = 2/257 (0%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N    + +V   +  +  +   +  + L K +E +  F+  +S+E ++PLT I GF ++L
Sbjct: 194 NYNVRVNYVGDDEISKLNQGFNQMAQQLAKQEETRQKFISDISHEFQTPLTAIQGFANIL 253

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   L    S++ +Y + I   S  L  L  ++L L  ++   ++L Y+T  + + L+ V
Sbjct: 254 KDEDLPK--SQRQKYADIILFHSKRLSTLSKNMLQLTLLEREEVELEYTTFSIVEQLSRV 311

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +   +    +I I      K  +   D QRL Q++  I+SNA+ ++  G  + +K  +
Sbjct: 312 ISTQENQAILKDIEIVFEKPRKDITVNGDEQRLEQVWINIISNAIKYTDNGGLITIKVKK 371

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            + +   S+++ G  + +++   +F RF          G GLGLSIV+S I+LH G++ +
Sbjct: 372 TSKEVEVSIEDTGRGMSKEVISHIFERFYREDKARSVEGNGLGLSIVKSIIDLHHGNIDV 431

Query: 775 SSSDEGVTTINCRIPSK 791
            S  +  +T   ++P++
Sbjct: 432 ISQVDVGSTFIIKLPNE 448


>gi|182418132|ref|ZP_02949432.1| sensor protein KdpD [Clostridium butyricum 5521]
 gi|237666286|ref|ZP_04526273.1| sensor protein KdpD [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377950|gb|EDT75490.1| sensor protein KdpD [Clostridium butyricum 5521]
 gi|237658376|gb|EEP55929.1| sensor protein KdpD [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 468

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 127/228 (55%), Gaps = 8/228 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + ++++ ++ +S++LR+PLT I+G + ++    +KL     K    V+ I+  +  L NL
Sbjct: 244 ERLRSNLIRGISHDLRTPLTAIVGASGVVIDNINKLPQETIKD--LVKDINEEALWLNNL 301

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V +IL++  +  G + +     V++D+++E  + I+  +   ++++ +  +  + S   D
Sbjct: 302 VENILNMTRIGEGKLVIKKQDEVVDDIVDESLRHISGLLSNRDVQVSLPRE--VISIPVD 359

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            + ++Q+   +L NA+ ++ +  T+ L+  + +   +F + +NG  I E +   +F+ FV
Sbjct: 360 GKLIVQVLINLLDNAVKYTDEKCTIYLRVFQKDDFIVFEIADNGEGINESIIDKIFDSFV 419

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           S + +    +RG+GLGL+I ++ IN HGG ++   S EG    +  +P
Sbjct: 420 SYSGKIVDGKRGMGLGLAICKAIINAHGGEITAGKSPEGGALFSFTLP 467


>gi|219848679|ref|YP_002463112.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542938|gb|ACL24676.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 710

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 164/351 (46%), Gaps = 35/351 (9%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDG 496
           ++ +++G+ V+   G++ L N  A R L  + E++   G     +AA  +R +   ES  
Sbjct: 368 LNDMADGLIVYDDHGKVYLDNAVARRVLQYSAEHQ---GVLHTRLAAFAARLFQRGESLS 424

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            ++    +         +QGTL               P+ +T L  V + D         
Sbjct: 425 EEVEVKDVDGAQARYYRIQGTL-------------VNPSPETCLAVVVLHDIT------- 464

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYIS 614
             ++ LR  ++ +  F+  VS+ELR+PL  + GF  LL  +++K+G+LN +Q++ ++ + 
Sbjct: 465 --DQKLR--EQQRRDFMAKVSHELRNPLHTLQGFLKLLINESNKVGNLNERQTEALQEVE 520

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L   + D+++L  ++ G   +N       D++        +K  E+ + + +   
Sbjct: 521 NSVNTLKKRIVDLIELNRLERGQFTINPVRTNPIDIIVTTCSQQRSKALESEVELIIDIP 580

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +L   + D  R+ Q+ + ++ NAM  + +G  +++ A +     +  V + G  I  ++
Sbjct: 581 DQLPQVIVDEDRIRQVLTNLIENAMKATPRGGKIVVSAEQQQDQILIHVTDTGKGIASEL 640

Query: 735 CKSVFNRFVSNAHRGQRRG--VGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + +F+ F S  + G   G  +G+GL+I    +  HGG + ++ S+ G  T
Sbjct: 641 WEKIFDPFYSRGN-GMLAGENMGVGLTICRQLVEAHGGKIWVAHSEVGKGT 690


>gi|326939024|gb|AEA14920.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 306

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 6/238 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +A  +   +L   D  +  F+ +VS+ELR+PL+ I G+++ +      +   +Q + 
Sbjct: 60  RLGKAFNKMANSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV--AKGPQQEKV 117

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I   +  +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  + I
Sbjct: 118 TQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKELHI 177

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               + ++   + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  
Sbjct: 178 STNLNPEIIVMI-DEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQIDDYCELKIKDTGIG 236

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           I  +  +++  RF  V  A   Q  G GLGL+IV+  +++HGGH  I S  D+G T I
Sbjct: 237 IDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGHWKIESEKDKGTTVI 294


>gi|288942502|ref|YP_003444742.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897874|gb|ADC63710.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 806

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 15/235 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A RA T +   L +++  K+ F+ +VS+ELR+PL +I+  + +L     G L+  Q +  
Sbjct: 380 AARAHTRE---LERSNRYKSQFLANVSHELRTPLNSILLLSKMLGAEGNG-LSPTQRRQA 435

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENN 666
           + I  +   L  L+++ILD++ +++G + LN   +    +L DL+      +A K  E +
Sbjct: 436 QVIHEAGRDLRALIDNILDISRIESGRLGLNPEPVDLRPMLEDLIELFSPQLADKPVELS 495

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK 724
           +R++  +   + +   DR +L QI    L+NA+ F+  G   I     A      I SV 
Sbjct: 496 LRLEPDAPEHIRT---DRDKLRQILKNFLANAIKFTECGEVRIEVGGCAESERPLILSVI 552

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           + G  IP D  + +F  F       +RR  G GLGL+I      L GG + + S+
Sbjct: 553 DTGIGIPPDKQEIIFEAFQQADGSTRRRYGGTGLGLAISRELATLLGGRIEVEST 607


>gi|222151384|ref|YP_002560540.1| hypothetical protein MCCL_1137 [Macrococcus caseolyticus JCSC5402]
 gi|222120509|dbj|BAH17844.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 585

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 14/242 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +TE+    +K D++K  F+ +VS+ELR+P+  + G+T+ +    + S  S   +++  
Sbjct: 344 RDMTEE----KKIDQMKQMFIANVSHELRTPIQMLQGYTEAI-LDGIVSEKSDVDEFLNI 398

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK---QSIATKMHENNIRI 669
           I   S  L  LVN++L++A +DAG   LN     + +L+       + +A K HE  ++ 
Sbjct: 399 ILDESKRLNRLVNELLNVARIDAGEQVLNLEATDIEELIERTIMNFKHVAEK-HETELQT 457

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                 K      D  +++Q+ + I+ NA+ ++  G  + +    D+ + I  + + G  
Sbjct: 458 HYSHHSKAW---LDYDKMIQVITNIIDNALRYTVAGDVISIHTDEDDENLIIRISDTGVG 514

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +   ++F RF  V  A    + G GLGL IV+S +  H G +++ S+    TT    
Sbjct: 515 IAPEHIDNIFERFYKVDQARTRGKHGTGLGLFIVKSIVEGHHGSINVDSTVGKGTTFVIS 574

Query: 788 IP 789
           IP
Sbjct: 575 IP 576


>gi|171056927|ref|YP_001789276.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170774372|gb|ACB32511.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 935

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 4/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L   NE L+  D +K+ F+  V++ELR+PLT+I    +L++  +     +++ Q+
Sbjct: 665 RATDELRAANEKLQGLDRLKDDFMSSVTHELRTPLTSIRALAELMR-DEADMPEAQRQQF 723

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  L  LVN +LD+A +++G        + L  L     Q++A  M E  I +
Sbjct: 724 MTIIVGETERLSRLVNQVLDMAKIESGHATWIDDDVDLVALAGHAAQTLAELMRERGITL 783

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNG 727
           ++ +    L +  AD  RLLQ+   +LSNA  F+  G+  I+   R D      +V +NG
Sbjct: 784 QLDLPAEPLPTLRADPDRLLQVLLNLLSNAAKFTPAGAGRIVLTVRGDAQGATVTVADNG 843

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             +P      VF +F        R +G GLGL I    +  +GG + + S      T   
Sbjct: 844 PGVPAHEQALVFEKFRQGGDGLNRPQGTGLGLPICRQIVEHYGGRIWLRSDPGQGATFGY 903

Query: 787 RIP 789
            +P
Sbjct: 904 TLP 906


>gi|83814809|ref|YP_446154.1| putative two-component system sensory/regulatory protein, putative
           [Salinibacter ruber DSM 13855]
 gi|294508078|ref|YP_003572136.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|83756203|gb|ABC44316.1| putative two-component system sensory/regulatory protein, putative
           [Salinibacter ruber DSM 13855]
 gi|294344406|emb|CBH25184.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 942

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKAD 566
           + +QG  E   D ++++SI P+ +A   +  +     ++T+    E  L    E   +A 
Sbjct: 648 RPIQGGDE---DRIIDFSIRPVTDADGQVELLIPEARDITELKWREETLRAAKEEAEEAS 704

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++ + ++S+ELR+PLT+I+GF + +   +        S++   I+ S   LL   ++
Sbjct: 705 RLKSAVLANMSHELRTPLTSILGFAEAID-DEASDGAGPVSRFASLIAKSGERLLRTFDN 763

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           IL+L+ ++A         + +      V   I  +   ++I ++           A   +
Sbjct: 764 ILNLSRLEAEQQNEPAEPVDVAAAARSVADEIQDRAEADDIALRTEVGSATMRTRAPADQ 823

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           +  +   +LSNA+ ++  G TV L+  R  GD +  V++ G  +  D   ++F  F   S
Sbjct: 824 VPIVLRHLLSNAITYTEAGGTVWLRVGRAGGDVVVEVEDTGIGMDPDEVPALFEPFRQAS 883

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                +  G GLGL++V+  ++  GG V +++ +   T +   +P  E
Sbjct: 884 EGFGREYEGTGLGLAVVQRAVDRMGGTVDVATEEGEGTCVTVGLPGME 931


>gi|74318689|ref|YP_316429.1| periplasmic sensor hybrid histidine kinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058184|gb|AAZ98624.1| Periplasmic Sensor Hybrid Histidine Kinase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 841

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 9/233 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           RKA   K+SF+ ++S+ELR+PL  +IG  DLL  +K   LN +Q ++ + I  S+  LL 
Sbjct: 191 RKASLAKSSFLANMSHELRTPLNGVIGVADLLAETK---LNKEQKEFAQIIRTSADTLLE 247

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           L++++LD++ ++AG +  +     L+ ++N     + T+ +   + +   I+        
Sbjct: 248 LIDNVLDISRIEAGRILTSSEDFDLHRVINGTVAMMETQANAKGLVLAAHIAPQTPFQLQ 307

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSV 738
            D   L Q+   ++ NA+ F+  G   +       G+       V + G  IP D    +
Sbjct: 308 GDAPHLRQVLINLIGNAVKFTEHGRVDVYVRPVGQGNPQRLRLEVVDTGIGIPPDAQIRI 367

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ F        RR  G GLG +I +  +   GG + + S +   TT    +P
Sbjct: 368 FDSFTQADASITRRFGGTGLGTTIAKQLVEAMGGEIGLHSREGEGTTFWFELP 420


>gi|56552219|ref|YP_163058.1| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543793|gb|AAV89947.1| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 545

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L++ N AL++  +   +F   V++EL++PL ++    D L+  K   L   + Q +  
Sbjct: 293 RSLSDMNTALQQRIDATEAFAADVTHELKNPLASLRSAVDSLEMIKDDHL---RQQLIGV 349

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      L  L+ DI + + VDA + + ++  I L  L+  V +    +    ++RI   
Sbjct: 350 IRDDIQRLDRLITDISEASRVDAEMARSSFEVIDLGPLIQGVTKHCERRPDAADVRIAFA 409

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +   + D  RL ++   ++ NA+ FS     V +   RD  D +  V++ G  +P
Sbjct: 410 RPQSGIAVVLGDGTRLTRVVENLIDNAISFSPPDGLVTITTTRDKDDVVIRVEDEGPGVP 469

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +D  + +F RF  V  +     R  GLGL+I ++ +  H G + ++    G
Sbjct: 470 DDAKEEIFRRFHSVRPSQEAFGRHSGLGLAIAKATVEAHHGTIEVAKRSHG 520


>gi|295109067|emb|CBL23020.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 658

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 136/279 (48%), Gaps = 38/279 (13%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP      + TFV+V+D V  + AL    E  R     K+SF+  +S++LR+P+  IIG+
Sbjct: 252 IPTGERAVLTTFVDVSDMVMLKNALRRAEEGSRA----KSSFLFAMSHDLRTPMNAIIGY 307

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG----------IMKL 640
            +L++ +  G      + Y++ +  +S  LL L+ ++L++A +++G          +MKL
Sbjct: 308 AELME-AHWGE-KEAATNYLQKLKGASQFLLALIGNVLEIARIESGKETLNEAPWNLMKL 365

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
             +  +L D   E+ +   T     NIR          +   D  ++ +I   +LSNA+ 
Sbjct: 366 EETLDILLD--REISRKQLTVNRNVNIR--------HANVYCDALKIREIIMNLLSNAVK 415

Query: 701 FSSKGSTVILKAARD---NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           ++++G  ++L          DF+     V +NG  I ++    +F+ F       +    
Sbjct: 416 YTAEGGKIVLDIEEKPSVQDDFMTLQIRVSDNGIGISKEYIPHIFDAFTRERSSSESGII 475

Query: 753 GVGLGLSIVESFINLHGGHVSI-SSSDEG---VTTINCR 787
           G GLGL IV+SF++L  G +S+ S S +G      I+CR
Sbjct: 476 GTGLGLHIVKSFVDLMNGDISVESESGKGTCFTVEISCR 514


>gi|258541259|ref|YP_003186692.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632337|dbj|BAH98312.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256635394|dbj|BAI01363.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256638449|dbj|BAI04411.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256641503|dbj|BAI07458.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256644558|dbj|BAI10506.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256647613|dbj|BAI13554.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256650666|dbj|BAI16600.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653657|dbj|BAI19584.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1160

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 127/258 (49%), Gaps = 12/258 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R ++ L +  E    A+  K+ F+  VS+E+R+PL +I+G+  LL+ 
Sbjct: 687 QTRLLMKEIRAHKRTDQELKKAKERAEAANLSKSRFMVGVSHEIRTPLNSIMGYAYLLEN 746

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L     KQ++ ++ I  S+  L  L+  + D++ ++AG + + +  I   + L  +  
Sbjct: 747 KMLAP--EKQNEGLKVIQRSAEHLSGLIEGLFDISKIEAGRLDILHDKINFQEFLKHLTG 804

Query: 657 SIATKMHENNIRIKVISD--GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +  +   NN ++  I D    L  +V  D++RL QI   +LSNA+ F+  GS     + 
Sbjct: 805 ML--RFQVNNKKLVFIEDIPENLPEYVMTDQRRLRQILINLLSNAIKFTPSGSVSF--SV 860

Query: 714 RDNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           R N +   F +++ G  IP+   + +   F  ++H    R  G GLGL+I    + + GG
Sbjct: 861 RWNMEIATFEIRDTGIGIPDSDIERIQEPFQRSSHPDSHRIQGTGLGLTITRLLVQILGG 920

Query: 771 HVSISSSDEGVTTINCRI 788
             +I S+    TT   R+
Sbjct: 921 EFTIKSTVGQGTTCRVRL 938


>gi|119470568|ref|ZP_01613271.1| putative Sensory box sensor histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
 gi|119446269|gb|EAW27546.1| putative Sensory box sensor histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
          Length = 1263

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 12/231 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ALT+      +A   K+ F+ ++S+E+R+PL  ++G  D+L       L  +Q Q  +  
Sbjct: 646 ALTKAKHNAERATLAKSRFIANLSHEIRTPLNAVLGLLDMLIEQ---GLTQRQIQQTDQA 702

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  LL ++N +LD A V++   +L  +   + +L++           +  +   +  
Sbjct: 703 KQAAQSLLLMLNRMLDFARVESAQAELKLAPFTVVELVDICDSLTGPLCEQKGVEFIIDV 762

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
           D  +  S + D  RL Q+   +L+NA+ F+  GS + LK     GD       FSVK+ G
Sbjct: 763 DPLIAPSLICDSIRLQQVLGNLLTNAVKFTHNGS-ITLKMELIEGDSTEQAICFSVKDTG 821

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           S I E     +F+ F        R  +GVGLGL+IV+  ++L GG ++++S
Sbjct: 822 SGINEADQLRLFDAFTQGDESSTRAHQGVGLGLAIVKHAVSLMGGEIAVNS 872


>gi|148549490|ref|YP_001269592.1| heavy metal sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
 gi|148513548|gb|ABQ80408.1| heavy metal sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
          Length = 460

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F   +++ELR+PL+N++G   +    +  + N ++   +E      T L  ++ND+L 
Sbjct: 242 SQFSDDLAHELRTPLSNLMGKAQVTLARERDNANYRE--VLEDSIEELTRLNRIINDMLF 299

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           LA V     ++    + L+D    V +  A       I ++V      G+ + DR    +
Sbjct: 300 LAQVSQPHTQVALKPLALSDEAARVVELFAYSAELKEIELRVQG---WGTALGDRLMFQR 356

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
             S +LSNA+  S +G  V L+  R   +   SV+N G  +P +    +F RF  V +  
Sbjct: 357 ALSNLLSNAIRHSPEGKPVALRIERSGSEVRLSVENQGPGVPAEHQSRLFERFYRVGSGR 416

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                G GLGL+IV+S + LHGG V +SS   G T      P++
Sbjct: 417 SRLEGGTGLGLAIVKSIMQLHGGRVEVSSCPLGPTRFTLVFPAE 460


>gi|331083700|ref|ZP_08332811.1| hypothetical protein HMPREF0992_01735 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403911|gb|EGG83463.1| hypothetical protein HMPREF0992_01735 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 471

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 115/217 (52%), Gaps = 5/217 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+ +VS++ RSPLT+I G+T+ +    +      Q +Y++ +   +  L  L   +L
Sbjct: 245 QRKFISNVSHDFRSPLTSIKGYTEAILDGTIPP--EMQEKYLKIVVYETDRLYKLTQSML 302

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            L  +D    +L+YS   +N  +    ++      +  I I++   G+     AD  ++ 
Sbjct: 303 TLNNLDEKGRQLDYSDFDINRTIKTTAEAFEGICRDKRISIELFLTGQTLFVHADMGQIQ 362

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAH 747
           Q+   ++ NA+ FSS  S + +++   +     SVK+ G  IP++    +++RF   ++ 
Sbjct: 363 QVLYNLIDNAIKFSSPDSIIKIESTLKHETVFISVKDTGCGIPKESLTKIWDRFYKIDSS 422

Query: 748 RGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           RG+ R+G GLGL+IV+  IN H  ++++ S+ EGV T
Sbjct: 423 RGKDRKGTGLGLAIVKEIINSHKQNINVIST-EGVGT 458


>gi|288959744|ref|YP_003450084.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912052|dbj|BAI73540.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1082

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 112/248 (45%), Gaps = 9/248 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYV 610
           E  L +  +A   A   K  F+  +S+ELR+P+  +IGF DL+     G + N++   + 
Sbjct: 508 EAELQDARQAAEAASRGKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRDFA 567

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+N+ILD    +AG + L+   + L+       + +  +     I I 
Sbjct: 568 INIRDSGQHLLELINEILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIAIA 627

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARDNGDFIFSVKNNGSS 729
              +        D +R+ QI   +LSNA+ ++  G +V L      +G  +  V++ G  
Sbjct: 628 AKVEPAARHMRGDERRIRQILLNLLSNAVKYTPAGGSVSLTTGPAPDGGLLLEVRDTGVG 687

Query: 730 IPEDMCKSVFNRFV----SNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           IPE   + V   +      +  R + R   G GLGL +    + LHGG ++++S     T
Sbjct: 688 IPEPELERVPPAYTRVDGPDGRRAESRRIEGSGLGLPLTRRLVELHGGTLTLASRVGRGT 747

Query: 783 TINCRIPS 790
           T+    P 
Sbjct: 748 TVTVHFPP 755


>gi|220910721|ref|YP_002486031.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219867493|gb|ACL47830.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 766

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 16/247 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T    AE+ L +  E   KA + K+ F+ ++S+ELR+PL  I+  T ++  ++  +  
Sbjct: 334 NITSLKLAEQELEKAKEEAEKASQAKSLFLANMSHELRTPLNVILIMTQMM--NRTANKI 391

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  +Y++ IS +S  LL ++ND+LDL  V+A    L  S   L +LL  +  +   +  
Sbjct: 392 PEYQEYIDLISRNSDHLLKMINDVLDLFKVEAEKASLENSETNLFELLQSIYVTFKQQCT 451

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           + +I+I +  D K+   +  D Q+L Q+   ++ NA+ F+  G   +        D    
Sbjct: 452 DKHIQINLEIDEKVPRLILVDVQKLQQVLINLIGNAVKFTEHGEITVRVTVELTQDKTKW 511

Query: 719 ------FIFSVKNNGSSI-PEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGG 770
                   F+V++ G  I PE+M + +F+ F  + A R    G GLGLSI +  + L GG
Sbjct: 512 QDASIPLAFTVEDTGVGIAPEEMNQ-IFDAFAQAAAGRQMTGGTGLGLSISQGLVQLMGG 570

Query: 771 HVSISSS 777
            +++ S+
Sbjct: 571 EITVKST 577


>gi|162450707|ref|YP_001613074.1| putative sensor kinase [Sorangium cellulosum 'So ce 56']
 gi|161161289|emb|CAN92594.1| putative sensor kinase [Sorangium cellulosum 'So ce 56']
          Length = 341

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 111/229 (48%), Gaps = 4/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R   E++  FV  VS+ELR+PLT+I  FT+ L   +  +++  + + +E ++  S  L  
Sbjct: 76  RNLSELQADFVSKVSHELRTPLTSIRMFTETLTLRRGDTIS--EDRCIEALTKESARLQQ 133

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++ +LD   +++G      S   L ++ +E   +      + ++ + V  D  L   + 
Sbjct: 134 LIDRLLDWGRMESGRRVYELSEHHLGEIADEAIHAFEPTREKRSVDLDVSIDANLPPVLC 193

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR  L+     +LSNA  +  +   + + A   N   + +V++NG  I     K +F +F
Sbjct: 194 DRSALVDAIVNLLSNAYKYGGQPRKISVSAHVLNRSAMLTVRDNGKGIARAEHKRIFEKF 253

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V +    Q+ G GLGLSIV+  I  HGG + + S     +T    +P
Sbjct: 254 YRVDDLLARQQEGSGLGLSIVKHVIRAHGGKILVDSEPGKGSTFTLVLP 302


>gi|297625539|ref|YP_003687302.1| Sensor protein [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|32452354|emb|CAD60274.1| putative two-component system histidine kinase [Propionibacterium
           freudenreichii subsp. shermanii]
 gi|296921304|emb|CBL55857.1| Sensor protein [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 621

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 137/279 (49%), Gaps = 30/279 (10%)

Query: 527 EYSIIP-LPNAQT---------MLTFVNVTDSVRAERALTEKNEALRKADEIK-NSFVQH 575
           E ++ P +PN++T          L+F  + D+V  E ALT      R+A E K   FV  
Sbjct: 337 EVNLPPRIPNSETDPKNEVGRVGLSFNRMLDNV--EGALT-----AREASENKVKQFVAD 389

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            S+ELR+PL +I G+ +L +  +   LN   +  +  I++ S  +  LV D+L LA +D 
Sbjct: 390 ASHELRNPLASIRGYAELAQ-RRANELNPDTAFAMSRITSESERMSGLVEDMLLLARLDT 448

Query: 636 GIMKLNYSTIVLNDLLNEVKQS-IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
                   T V+  +LN    + +A   H  + R+ +  +    + +ADR +L Q+ + +
Sbjct: 449 KPELQLAETDVVEVVLNAASDAQVAGPDH--HWRVNLPDEAV--TVMADRNQLHQVVANL 504

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF----VSNAHRGQ 750
           LSNA   +  G+ V      +    +  V +NG  +P ++   VF RF    V+  H  +
Sbjct: 505 LSNARKHTPAGTQVDTSVGIEGDQAVIRVHDNGPGVPPEIADKVFERFARADVARTHD-K 563

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               GLGL+IV + +  HGG  ++ SSD G TT   R+P
Sbjct: 564 EGSTGLGLAIVAAVMAAHGGTAALDSSD-GHTTFTLRLP 601


>gi|294788406|ref|ZP_06753649.1| putative sensor histidine kinase CpxA [Simonsiella muelleri ATCC
           29453]
 gi|294483837|gb|EFG31521.1| putative sensor histidine kinase CpxA [Simonsiella muelleri ATCC
           29453]
          Length = 478

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 9/216 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L+K  E +   + HVS+E+RSPL  I     LL+         KQ++Y+  + +  T 
Sbjct: 226 EQLQKLVEKERHLLHHVSHEMRSPLARIQAIVGLLQARP-----DKQTEYISRLESELTR 280

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV---KQSIATKMHENNIRIKVISDGK 676
           + NLV ++L L+ ++   + +    + +   L ++    Q++A K  ++ I ++V +  K
Sbjct: 281 MDNLVGELLTLSRLETANIPMEKENLQIVPFLKQIVEDSQTVAEK-KKHTISLEVKNIDK 339

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                A+   L + F  ++ NAM++S +GST+ +K   D  +    + +NG+ I E+   
Sbjct: 340 NARLEANESYLYRAFDNVIRNAMNYSPEGSTIKVKMYEDRKNLHIEIVDNGNGIKEEQLP 399

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +F  F          G GLGL++ +  I  H G +
Sbjct: 400 HIFTAFYRADSSANTTGTGLGLALTKHIIEQHNGKI 435


>gi|283835631|ref|ZP_06355372.1| sensor protein EvgS [Citrobacter youngae ATCC 29220]
 gi|291068845|gb|EFE06954.1| sensor protein EvgS [Citrobacter youngae ATCC 29220]
          Length = 1080

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 8/239 (3%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           TEKN+A+ +A + K+ F+  +S+ELR+P+++I+GF +LL +S+L     K++  +    A
Sbjct: 585 TEKNKAI-EATKAKSRFLASMSHELRTPVSSIVGFLELLSSSELSPAQRKEA--IALTGA 641

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++  LL L+  ILD+  +++G  ++      L  L+     S      +  I +  IS  
Sbjct: 642 TAQSLLGLIGKILDVDKIESGKYQVVPQWTDLAQLIELQCHSFDALARQKGITLACISQL 701

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDN-GDFIFSVKNNGSSI 730
            +   V  D+Q L QI + ++ NA+ F+++GS   T  L    DN G    ++ + G  I
Sbjct: 702 PINERVFVDQQALRQILTNLVGNALKFTTQGSIHVTARLTPETDNHGTLTITISDTGCGI 761

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            E+    +F+R+       Q+ G GLGL I +  + L GG + + S     TT    +P
Sbjct: 762 SEEEQAGLFHRYAQGRCGRQQTGSGLGLFICKELVTLMGGTLELKSVLSKGTTFTITLP 820


>gi|261250289|ref|ZP_05942865.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
 gi|260939405|gb|EEX95391.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
          Length = 1128

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 119/240 (49%), Gaps = 5/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ A+++K+ F+   S+ELR+PL  ++G  + L +   G + S+    ++ 
Sbjct: 444 KLIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALASGANGPITSEHKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   L  LV+D+LD   +  G + +  S + L      V +  +  +    IRI   
Sbjct: 504 IISSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLAGSTRLVLELSSHLLGTKPIRIINQ 563

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +     AD QRL Q+   ++ NA+ ++S+G  VI     D+ +    V + G  IP 
Sbjct: 564 VPNEPVWVSADPQRLEQVLYNLVGNAIKYTSEGKIVISANVVDD-NIRVQVVDTGQGIPA 622

Query: 733 DMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D  + +F   +   S++ R  R+G GLGLSI    I L  G + +SS     TT +  +P
Sbjct: 623 DQLEHIFEPLIQAGSDSSR-YRQGAGLGLSISRQLIELMNGSLYVSSQPMVGTTFSFTLP 681


>gi|190893144|ref|YP_001979686.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190698423|gb|ACE92508.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 1127

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 7/250 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    +    + + AL    E    A+  K+ +V  +S+ELR+PL  ++G+  +L+ 
Sbjct: 645 QNTLLLKEIAAHKKTDAALQNAKETAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILER 704

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               ++ + +   ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L+++ +
Sbjct: 705 DD--TIPAPRQSSIKVIRRSAEHLSGLIDGLLDISKIEAGRLQVYSNEINIQDFLDQIVE 762

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     +         L  FV  D +RL QI   +LSNA+ F+ +GS       R 
Sbjct: 763 MFRPQAQAKGLAFVHQRSPALPQFVRTDEKRLRQILVNLLSNAIKFTDQGSVTFDVGYRS 822

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F+V + G  I E     ++  F        R   G+GLGL+I     N  GG +S
Sbjct: 823 QVA-TFTVADTGRGITEKDLPRIYEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEIS 881

Query: 774 ISS-SDEGVT 782
           +SS  DEG T
Sbjct: 882 VSSVRDEGST 891


>gi|330973560|gb|EGH73626.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 745

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 10/232 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQ-SQY 609
           R +  + +A+R  DE+    V  VS++LR+P+T I     +++   S  G   S++ S  
Sbjct: 509 RQVRREQQAVRARDEL----VAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRRISTA 564

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +++ +  L+ D+LD + ++AG   +    + ++ +  E    +A    + +I I
Sbjct: 565 IDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEI 624

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              ++  L    AD +RL Q+ S ++ NA+ F+ K  T+ + A  +  + +F+V+++G  
Sbjct: 625 SFNAEPDL-KVQADPERLFQVLSNLIGNAIKFTPKMGTIGVAAMSNGTEIVFTVRDSGEG 683

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH-VSISSSDEG 780
           IP +    +F R+ +    G   G GLGL I +  +  HGG  V+ S   EG
Sbjct: 684 IPPEQLPHIFERYWT-VKEGNPTGTGLGLYISQGIVKAHGGELVAQSRVGEG 734


>gi|330446361|ref|ZP_08310013.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490552|dbj|GAA04510.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 971

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           ++EA  KA+  K+SF+  +S+E+R+P+  ++G   LL  ++L     +Q +Y++ I+ S 
Sbjct: 460 RDEA-EKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQL---TPQQKRYLDVINRSG 515

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             LL+++NDILD + ++AG + +  S   ++ ++ +V   +  +     I ++  I+   
Sbjct: 516 ETLLDILNDILDYSKIEAGHLDIRPSDFSVSRMVTDVANMLEGRALAKRIGLEYHIAPEV 575

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD-FIFSVKNNGSSIPEDM 734
            G +  D  R+ Q+   ++ NA+ F+  G  ++ ++   D  D  +FSV++ G  I E+ 
Sbjct: 576 EGMWYGDESRIRQVLVNLVGNAIKFTDNGKVSITVEPHPDMPDELLFSVRDTGIGIDEEE 635

Query: 735 CKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +FN F  + A R    G GLGL+I +  +    G + + S
Sbjct: 636 QNLLFNAFKQAEAGRKSIEGTGLGLAISKHIVAAMDGEIGLDS 678


>gi|320334454|ref|YP_004171165.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319755743|gb|ADV67500.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 874

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 164/375 (43%), Gaps = 45/375 (12%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGW 497
           ++ L+EGV    PDG++ L N A R++   + + L P             +Y   E+DG 
Sbjct: 520 LESLAEGVVACAPDGQLTLFNDAARTMHGLDASTLPP--------EAWPAHYKLFEADGA 571

Query: 498 DLFA----AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-----------F 542
                    ++ ++  ER      + +  D     S++   N Q + T            
Sbjct: 572 TPLTTDRIPLVRAWQGERVR-DAEIVIRPDDGPARSLVA--NGQPIFTEDGEPLGAVVAM 628

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T+   AE A+   NE LR++++    F    S++L++PL  +  F DL+       L
Sbjct: 629 HDLTERKVAEEAVRRSNEELRRSNQELEQFAYIASHDLQAPLRAMTSFADLIARKYADRL 688

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLA--TVDAGIMKLNYSTIVLNDLLNEVK---QS 657
           +++   Y+  I+ S   +  LV+D+L  +  T +   ++   S  VL+ +L  ++    +
Sbjct: 689 DARGQVYLGQIAQSGKHMKRLVDDLLAFSRVTTEERTVQPTDSGAVLDGVLERMRVEMDA 748

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARD 715
              ++    +   +I  G+L           Q+F  ++ NA+ +   G    V ++AA D
Sbjct: 749 AGGQVDRAALPTVLIGAGQLD----------QLFQNLVGNALKYHRPGVPPRVRVRAAPD 798

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              + F+V++NG  I     + VF  F     R Q  G G+GL+I +  +  HGG + + 
Sbjct: 799 GPLWHFTVQDNGIGIEPAYFERVFEIFQRLHTREQYEGTGVGLAICKKIVERHGGQLWLD 858

Query: 776 SSDEGVTTINCRIPS 790
           S+    +T +  +P 
Sbjct: 859 STPGEGSTFHFTLPG 873


>gi|317154216|ref|YP_004122264.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944467|gb|ADU63518.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 479

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 115/243 (47%), Gaps = 7/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA       LR+ + ++  FV  +S+E+R+PLT+I    DL+ +  LG +N +Q +++  
Sbjct: 231 RAFNAMAGRLRREERMRADFVAMLSHEIRTPLTSIREAVDLVGSGALGEVNERQERFLAI 290

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
               S  L +L+  ++ ++ +++  + L+        L+    + +A       + +   
Sbjct: 291 AGQESIRLSDLLARLMTVSRMESQALDLSPEPTDCAGLVTSALERLAPTAQARRVALSAR 350

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + D  + S V D   + Q+   ++ N + FS +GSTV ++   D     F V + G  I 
Sbjct: 351 LPDAPV-SCVCDPAHVQQVLLNLIGNGIKFSPEGSTVTIELLADESAATFRVSDTGPGIA 409

Query: 732 EDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +   + VF+++      G R    G GLGL+I    +  HGG +++ S     +T +  +
Sbjct: 410 QQEQELVFHKYYREP--GMRHSVDGAGLGLAIARRIVEAHGGRMALDSEPGLGSTFSFTL 467

Query: 789 PSK 791
           P K
Sbjct: 468 PLK 470


>gi|268318298|ref|YP_003292017.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335832|gb|ACY49629.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 785

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 127/273 (46%), Gaps = 10/273 (3%)

Query: 527 EYSIIPLPNAQ-TMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           E  I PL +A+  ++ F+    ++T  V  E+ L         A  +K +F+ ++S+E+R
Sbjct: 507 ELRIEPLRDAEGRLIGFMGLNHDITALVEYEQELKRARAEAETAARLKAAFLANMSHEIR 566

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL +I+GF +LL      S      ++   I  S   LL L+NDIL+L+ ++A  + L 
Sbjct: 567 TPLNSILGFAELLDEQLAASGQESLREFTGIIQRSGRRLLRLINDILELSRLEADRLVLR 626

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                L+ ++ E    +     +  + + V ++  +   + D  RL QI + ++ NA+ +
Sbjct: 627 TEPCALHTIVKEAVAELEPLACQKGLTLTVHTEA-VPPVLGDPHRLHQIVTNLVGNALKY 685

Query: 702 SSKGST-VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLG 757
           + +G   V ++   ++G    +  V + G  I  D    +F  F        R  G GLG
Sbjct: 686 TEQGEVRVEVQETTEDGVRQVVLRVTDTGPGIDPDFLPHLFEPFQRAPSENDRSEGSGLG 745

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I +  +    G +++ S+    TT     P+
Sbjct: 746 LAITKRLVEQMNGRITVESAPGNGTTFTVTFPA 778


>gi|225412406|ref|ZP_03761595.1| hypothetical protein CLOSTASPAR_05629 [Clostridium asparagiforme
           DSM 15981]
 gi|225042069|gb|EEG52315.1| hypothetical protein CLOSTASPAR_05629 [Clostridium asparagiforme
           DSM 15981]
          Length = 604

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 17/225 (7%)

Query: 564 KADEI---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           KAD +   K  F+  +S+E+R+P+  I G T + K+     +  K    +E I +S+  L
Sbjct: 220 KADAVSRAKTDFLSRMSHEIRTPMNAISGMTTIAKSVVKDPV--KTLDCLEKIESSNVYL 277

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           LNLVNDILD++ +++G ++L Y T+ L  LL  ++     +  E  + +  + DG+  + 
Sbjct: 278 LNLVNDILDMSRIESGKLELCYGTLDLTQLLASLESLFHAQALEKGLTM-CLKDGRSRNR 336

Query: 681 V--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI--FSVKNNGSSIPEDMC 735
           +  AD  RL Q+   ++ NA+ F+  G  TV ++    N   +  FSV + G  I     
Sbjct: 337 LLRADSLRLNQVLVNMIGNAVKFTDHGGITVRVEELEANPRAVLRFSVADTGIGIEPSSL 396

Query: 736 KSVFNRF----VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            ++FN F     S A R  R G GLGLSI    + + GG + ++S
Sbjct: 397 PNIFNPFEQAEASTASR--RGGTGLGLSISYRLVQMMGGVLEVTS 439


>gi|149174474|ref|ZP_01853100.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
 gi|148846584|gb|EDL60921.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
          Length = 488

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 12/224 (5%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDL 630
           FV  V++EL++P++ I  + ++L     G    +++ +   +I+     L  LVN +L+L
Sbjct: 253 FVSSVAHELKTPMSGIKAYIEMLID---GDCEPEEADELYGFINDQIDRLTRLVNSMLNL 309

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQ 689
           A +++G++++      LND+L      I+    E +I+    +SD  L  FV D+  L Q
Sbjct: 310 ARIESGVVEIKRHDHELNDILKTAADVISPTATEKDIKFTAELSDMYLPVFV-DKDMLGQ 368

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
               +LSNA+ ++  G  V L++  ++   +  V++ G  IPE+    +F+RF  V   +
Sbjct: 369 AIINLLSNAVKYTPNGREVRLRSRMEDTTAVIEVRDTGLGIPENSLPHIFDRFYRVPENN 428

Query: 748 RGQRRGVGLGLSIVESFI-NLHGGHVSISSS-DEGVTTINCRIP 789
           R    G GLGL++V   + N+H G +S+ S  DEG T     IP
Sbjct: 429 RSA-AGTGLGLALVHFIVTNVHNGSISVQSQVDEG-TCFTVTIP 470


>gi|300784917|ref|YP_003765208.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|7339514|emb|CAB82847.1| putative histidine kinase [Amycolatopsis mediterranei]
 gi|14572577|emb|CAC42479.2| histidine kinase [Amycolatopsis mediterranei]
 gi|299794431|gb|ADJ44806.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 469

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 11/232 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR  +     FV  VS+ELR+PL  +   TD+L       L    +     +SA +  L 
Sbjct: 245 LRAMEADARRFVADVSHELRTPLAAMNAVTDVLDEDA-EQLPPDTAVAARLVSAETRRLT 303

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            LV D+++++  DAG  +L    +   D+   V  S+A +  E      +++D   G + 
Sbjct: 304 RLVQDLIEISRFDAGRAELRREEL---DVAAAVTDSLAARGWEAGA--DLVTDLPAGITA 358

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             DR+RL  + + ++ NA+   +    V+L+  ++ GD + +V ++G  IP +    VF+
Sbjct: 359 RLDRRRLDIVVANLVGNALRHGAPRVEVVLR--KELGDVVLTVTDHGPGIPAEALPKVFD 416

Query: 741 RFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF  +++ R +  G GLGLSI      LHGG +  +++  G      R+P +
Sbjct: 417 RFTKADSARARSGGSGLGLSIARENARLHGGDIVAANTGTG-ARFELRLPGE 467


>gi|310819568|ref|YP_003951926.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392640|gb|ADO70099.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 831

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 9/234 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQYVEY 612
           +  + LR+A  +++ F+   S+ELR+PLT +    +LL      +++  L  +Q   +E 
Sbjct: 586 QTQKELREAITLRDQFLSMASHELRTPLTPLKATVELLLRQSDENQVLPLE-RQRSTLER 644

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           +      L  LV+D+LD+A +  G + +  +++ L  L  EV   I     E +  I++ 
Sbjct: 645 LRRQVDRLTRLVSDMLDMARIQGGRLAMRRASMDLTALAREVADRIQHSSRERSAPIQLE 704

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + +G L   V D QRL Q+ + ++ NA  +S   + + +         +  VK+ G  +P
Sbjct: 705 LPEGPLLG-VWDEQRLDQLLTNLIENAARYSPPDAPIQVCIGSTADRALIEVKDQGIGVP 763

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            +   S+F  F    NA +    G+GLGL+I    +  HGG +  SS+  G  T
Sbjct: 764 AESLPSLFTPFYRARNAAQHYAGGLGLGLAICREIVERHGGTIQASSAGPGQGT 817


>gi|262196343|ref|YP_003267552.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079690|gb|ACY15659.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 859

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 25/243 (10%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +F+  +S+ELR+P+  IIG T LL     G L S Q  YVE I      LL ++NDILD
Sbjct: 332 TTFLTSMSHELRTPMNAIIGMTGLLLD---GPLASAQRDYVETIREGGDALLTIINDILD 388

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
            A +++G ++L+     L   +    + +A +     + + V  D  L SFV  D  RL 
Sbjct: 389 YAQMESGTLRLDCERFDLYRCVESAAELVAAQAAAKQLELDVFLDPALPSFVYGDEARLR 448

Query: 689 QIFSKILSNAMDFSSKGSTVILKA-----------------ARDNGDFIFSVKNNGSSIP 731
           QI  +ILSNA+ F+ +G   ++ A                 A D     F V + G  I 
Sbjct: 449 QILVEILSNALKFTERGLVRLVAAPGEAPASGGGDRAGAPGADDTAVLSFHVSDTGIGIS 508

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT-TINCR 787
                 +F  F  +  +      G GLGL+I        GG +++ S    G T  +  R
Sbjct: 509 NAQQADLFQSFRQLDGSRSRSYGGTGLGLAICRYLAEHMGGAIAVDSELGAGATFHVVVR 568

Query: 788 IPS 790
           +P+
Sbjct: 569 LPA 571


>gi|326445170|ref|ZP_08219904.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
          Length = 690

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 24/263 (9%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E+ E L      K  F+ ++S+EL +PL +++    LL  +   +L+ +Q +Y 
Sbjct: 233 ARQVLEERTEQLILEMRYKTEFLANMSHELCTPLNSLLLLAKLLMDNDARNLSPRQVEYA 292

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  + + LL+L+N+ILDL+T +AG M ++ S      L + +    +    E  I + 
Sbjct: 293 ETIHGAGSDLLHLINNILDLSTAEAGKMNVSTSQAAPAQLADRIGAVFSPLAAEKGIGLS 352

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA--------------- 713
           V +  +L  +F+ D QRLLQ+   ++SNA+ F+  G   V +  A               
Sbjct: 353 VRASPELPPAFLTDEQRLLQVLRNLVSNAIKFTETGGVEVTIHPAGTDVPPTIRRQLVEA 412

Query: 714 -----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                 D G   F+V++ G  I     + +F+ F     +  R+  G GLGL+I      
Sbjct: 413 GSLSDPDAGVIAFAVRDTGIGIAASQVEVIFDAFKQADRKTTRKYGGTGLGLTISREIAR 472

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L GG +   S     +T    +P
Sbjct: 473 LLGGEIHAQSEPGHGSTFTLYLP 495


>gi|126724717|ref|ZP_01740560.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium HTCC2150]
 gi|126705881|gb|EBA04971.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium HTCC2150]
          Length = 784

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 107/208 (51%), Gaps = 9/208 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  +IG  DLL  SK   L+ +Q +  + I  S   LL+++NDILD + + +
Sbjct: 402 ISHEIRTPMNGVIGMADLLVKSK---LDEEQLELTKTIIESGESLLHIINDILDFSKLGS 458

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKI 694
           G ++L+   I + D+++   +++       +I + + S    +G  + D  RL QI   +
Sbjct: 459 GKLELSPQAISVPDVISRAIETLRAVARNKDIALSMTSVQSDIGFLLIDPVRLRQIVLNL 518

Query: 695 LSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + NA+ F+  G     V+++   +N +   ++ + G  IP D    +F  F        R
Sbjct: 519 VGNAIKFTDTGGVTIDVLMQEVSNNVEVTINISDTGIGIPADALHRIFENFTQADGDTTR 578

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSS 777
           +  G GLGLSI +      GG + ++S+
Sbjct: 579 KYGGTGLGLSISKRLAKQMGGDIVVTST 606


>gi|310818142|ref|YP_003950500.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391214|gb|ADO68673.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 558

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 7/235 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           R+A   +   +  VS++L++PL  + +G   LL+       +    ++   I  +S   L
Sbjct: 320 RRATRAREDLLAVVSHDLKNPLGVVQLGAALLLRERPNVPRDEHVHKHATRIRDASDRAL 379

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+LD   ++ G + L    +  + L+ E   SI      + +++ V     L   V
Sbjct: 380 RLISDLLDWGRLEEGRLPLETREVDASALVLEAVDSIRPLAEAHGLQVVVELPEGLPRVV 439

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R+LQ+   +L NA+ F+  G  V + A     +    V++ G  IP +    VF+R
Sbjct: 440 CDRGRVLQVLGNLLGNAVKFTDPGGRVTVGARTQGDEARLYVRDTGKGIPPEQLSYVFDR 499

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT---TINCRIPSKE 792
           +   A     RG GLGL+I +  +  HGG +   S+  EG T   T++  +PS E
Sbjct: 500 YW-QAKDSVSRGTGLGLAIAKGLVEAHGGRIEAQSTLGEGSTFSFTLHA-VPSHE 552


>gi|241761708|ref|ZP_04759795.1| integral membrane sensor signal transduction histidine kinase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374016|gb|EER63549.1| integral membrane sensor signal transduction histidine kinase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 545

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L++ N AL++  +   +F   V++EL++PL ++    D L+  K   L   + Q +  
Sbjct: 293 RSLSDMNTALQQRIDATEAFAADVTHELKNPLASLRSAVDSLEMIKDDHL---RQQLIGV 349

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      L  L+ DI + + VDA + + ++  I L  L+  V +    +    ++RI   
Sbjct: 350 IRDDIQRLDRLITDISEASRVDAEMARSSFEVIDLGPLIQGVTKHCERRPDAADVRIAFA 409

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +   + D  RL ++   ++ NA+ FS     V +   RD  D +  V++ G  +P
Sbjct: 410 RPQSGIAVVLGDGTRLTRVVENLIDNAISFSPPDGLVTITTTRDKDDVVIRVEDEGPGVP 469

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +D  + +F RF  V  +     R  GLGL+I ++ +  H G + ++    G
Sbjct: 470 DDAKEEIFRRFHSVRPSQEAFGRHSGLGLAIAKATVEAHHGTIEVAKRSHG 520


>gi|228938515|ref|ZP_04101123.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971394|ref|ZP_04132020.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978007|ref|ZP_04138386.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407]
 gi|228781668|gb|EEM29867.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407]
 gi|228788261|gb|EEM36214.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821113|gb|EEM67130.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 466

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 6/238 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +A  +   +L   D  +  F+ +VS+ELR+PL+ I G+++ +      +   +Q + 
Sbjct: 220 RLGKAFNKMANSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGV--AKGPQQEKV 277

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I   +  +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  + I
Sbjct: 278 TQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKELHI 337

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               + ++   + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  
Sbjct: 338 STNLNPEIIVMI-DEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQIDDYCELKIKDTGIG 396

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
           I  +  +++  RF  V  A   Q  G GLGL+IV+  +++HGGH  I S  D+G T I
Sbjct: 397 IDIEHLENLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGHWKIESEKDKGTTVI 454


>gi|229102165|ref|ZP_04232875.1| hypothetical protein bcere0019_13270 [Bacillus cereus Rock3-28]
 gi|228681235|gb|EEL35402.1| hypothetical protein bcere0019_13270 [Bacillus cereus Rock3-28]
          Length = 617

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 142/292 (48%), Gaps = 33/292 (11%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 339 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 378

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + ++      ++   + Y + 
Sbjct: 379 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIQ----DGVSKDTTYYTDV 434

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL  +T  + +L+ +V   +   M E  +++ V 
Sbjct: 435 ILEETENMNRLIVEMLELAKLESGTYKLEMTTFSIGELIQQVHTKLLFSMEEKQLQVDVD 494

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +D  +  FV A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IP
Sbjct: 495 ADTSI--FVKANRSRIEQVVVNLLSNAIRYTPDGERIQVSIIETEDTVKVEIENTGNPIP 552

Query: 732 EDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           E+  + +++RF   +A R +   G GLGLSIV++ ++LH     + +++  V
Sbjct: 553 EESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAKYGVYNTNNSV 604


>gi|262202522|ref|YP_003273730.1| ATP-binding region ATPase domain-containing protein [Gordonia
           bronchialis DSM 43247]
 gi|262085869|gb|ACY21837.1| ATP-binding region ATPase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 410

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 7/221 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+ +  + L   D+I+   +  +++ELR+PLT I   TD ++      + +  S   + 
Sbjct: 135 RAINQLAQRLDSQDDIRKRMLSDLAHELRTPLTTIGAITDAIED----GIRAPDSHTFDV 190

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++T L  L  DI  +++ D   M L+ +TI +N+LL    +  A    +  + + ++
Sbjct: 191 VRTATTRLQRLAEDIATVSSADEHQMPLHPATITVNELLIATYEEAADLFTDAKVTLGIV 250

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIP 731
           +         D +R+ Q+   +L+NA+  SS G  V++KA       +  SV + G  IP
Sbjct: 251 TTAARVHIHVDAERMSQVLLNLLTNALRHSSPGQRVVVKADTAPAHAVRISVVDCGDGIP 310

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                 +F+RF        R   G G+GL+I  S +  HGG
Sbjct: 311 PQHLPHIFDRFYRTDSSRTRDAGGSGIGLTIARSIVEDHGG 351


>gi|160895668|ref|YP_001561250.1| histidine kinase [Delftia acidovorans SPH-1]
 gi|160361252|gb|ABX32865.1| histidine kinase [Delftia acidovorans SPH-1]
          Length = 1166

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 127/256 (49%), Gaps = 8/256 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    +    R +  L    +   +A + K  +V  +++ELRSPL +++G+T +L  
Sbjct: 658 QNQLLLQEIAAHKRTDAELQAAKDHAEQASQAKTRYVAGMTHELRSPLNSLLGYTQILLK 717

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S    ++    + +  +  S   L  L+++ L+LA+++AG ++L+ + + L  L++ ++ 
Sbjct: 718 SP--QVDGWVRETLSTMQHSGQHLRALIDESLELASIEAGRLRLDLAPLPLPALIDGIEA 775

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  +     ++  V + G +  +V AD +RL QI   +LSNA+ F+ +G   +    R 
Sbjct: 776 MMRPQAQARGLQFSVETLGTMPRWVRADAKRLRQILINLLSNAVRFTQRGEVRLRMDFRP 835

Query: 716 NGDFIFSVKNNGSSI-PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +   I  V + G  I P+DM + +F  F   S   R    G GLGL+I      L GG +
Sbjct: 836 HVSRI-EVIDTGIGIEPQDM-ERIFVPFERGSAGRRVSEAGTGLGLTITHLLTELMGGQL 893

Query: 773 SISSSDEGVTTINCRI 788
           ++SS+    +    R+
Sbjct: 894 TLSSTPGEGSCFTVRL 909


>gi|154493654|ref|ZP_02032974.1| hypothetical protein PARMER_02994 [Parabacteroides merdae ATCC
           43184]
 gi|154086864|gb|EDN85909.1| hypothetical protein PARMER_02994 [Parabacteroides merdae ATCC
           43184]
          Length = 910

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E N  + K+   K  F  ++++E+++PLT I+G   L K SK     S  +  +  I 
Sbjct: 387 LAEANRYIEKSTAQKLQFFTNITHEIKTPLTLILG--PLGKLSKEAPEGSSLADDIRIIR 444

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  L  +V+ +LD   V++  M +    + L   + EVK    T      I      D
Sbjct: 445 KNAERLKRVVDQLLDFRKVESNKMNMRVGEVDLVAFVAEVKSYFDTMAATKQIHFTFEHD 504

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
               +   DR ++ +I + +LSNA  F+  G TV +   +D GD +  SV++NG  IP +
Sbjct: 505 CPSVNIWVDRDKMEKILANLLSNAFKFTLDGGTVTIHL-KDKGDQVELSVEDNGKGIPSE 563

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SVF+RF +   +    G G+GL +   F+++H G + + S
Sbjct: 564 NIASVFDRFFT-GDQNYVTGTGIGLHLTREFVHMHKGTIRVES 605


>gi|317479509|ref|ZP_07938640.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904329|gb|EFV26152.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 875

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + +  L +A   K  F  ++S++ R+PLT I    + L  ++  +L+ +  Q +E + 
Sbjct: 356 LEQLSHELEEATHAKLVFFTNISHDFRTPLTLIADPIEQLLANR--TLDGQPRQLLELMK 413

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            +  ILL LVN ILD   V+ G M+L+     L D       S    + + +I      S
Sbjct: 414 KNVHILLRLVNQILDFRKVENGRMELHLEPFDLLDSFRGWNDSFRMALLKKHIAFSFEAS 473

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  +AD +++ +I+  + SNA+ ++ +   + ++  +   ++  SV N+GS I   
Sbjct: 474 PDTDFRMMADAEKMERIYFNLFSNAVKYTPENGKITVRLLKSEQNYSLSVFNSGSYISST 533

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             +++F RF      G + G G+GL++V +F+ +HGG+++  S ++G T I
Sbjct: 534 DVEAIFERFYQVD--GHQAGTGIGLALVRAFVEMHGGNITARSDEKGTTFI 582


>gi|251780053|ref|ZP_04822973.1| two-component sensor kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084368|gb|EES50258.1| two-component sensor kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 507

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 124/241 (51%), Gaps = 4/241 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + EK +A R A++ K   + +VS++LR+PLT+I+G+  L++  +  +     ++Y+  
Sbjct: 267 KEIGEKIQAERDAEKTKTDLITNVSHDLRTPLTSIMGYIGLVREDRYKN-KEDMNEYLNI 325

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  L  L+ D+ +   ++   MKL+   + L +LL+++ + +   + EN + I   
Sbjct: 326 AYNKAQKLNILIEDLFEYTKLNNNGMKLSKEKVNLCELLSQLIEEMTPIVDENLVSINKK 385

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D        D  ++L++F  ++ NA+ +S K   +I+   + +    F  +N G  I +
Sbjct: 386 FDIDKAYVFIDIVKMLRVFENLIMNAVKYSIKPGEIIIGLYQKDDYITFVCRNKGEYISK 445

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-TINCRIP 789
           +    VF+RF  V  +      G GLGL+I ++ INLH G +     D+ ++  +N +I 
Sbjct: 446 EKLDKVFDRFYRVDESRNANTGGSGLGLAISKNIINLHEGKIWAECIDDNISFYVNLKIE 505

Query: 790 S 790
           +
Sbjct: 506 N 506


>gi|261401424|ref|ZP_05987549.1| putative sensor histidine kinase CpxA [Neisseria lactamica ATCC
           23970]
 gi|313668919|ref|YP_004049203.1| two-component system sensor kinase [Neisseria lactamica ST-640]
 gi|269208556|gb|EEZ75011.1| putative sensor histidine kinase CpxA [Neisseria lactamica ATCC
           23970]
 gi|309379001|emb|CBX22454.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006381|emb|CBN87844.1| putative two-component system sensor kinase [Neisseria lactamica
           020-06]
          Length = 473

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 14/219 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L K    +   + HVS+E+RSPL  +     L++         KQ QY++ +      
Sbjct: 228 EKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQP-----QKQEQYLKRLEGELGR 282

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGK 676
           +  LV ++L L+ ++   M L    + L   L    E  QSIA K   N   + + +DGK
Sbjct: 283 MDTLVGELLTLSRLETSNMALEKENLALIPFLGNLVEDNQSIAQK---NGQAVTLSADGK 339

Query: 677 L---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +    +  A+   L + F  ++ NA+++S +GSTV++   + +  +I  V +NG  + E 
Sbjct: 340 IPENAAVCANESYLYRAFDNVIRNAVNYSPEGSTVLIHIGQSHKHWIIDVTDNGPGVDEM 399

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
               +F  F        + G GLGL+I    I  HGG +
Sbjct: 400 QLPHIFTAFYRADSGAGKPGTGLGLAITRHIIGQHGGKI 438


>gi|153870733|ref|ZP_02000072.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072802|gb|EDN69929.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 922

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 15/224 (6%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +++K++F+ ++S+E R+PL  I+G+T LL+     +L S+Q + +  I  S   LL LVN
Sbjct: 368 NQVKSTFLANISHEFRTPLNCILGYTQLLQDD--NTLTSRQKEDISVIQHSGNYLLKLVN 425

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DIL+L+ ++ G ++L+ +   L   L+++ +       +  I +   +   L + + AD 
Sbjct: 426 DILELSKLEKGNIELHPNDFRLGSFLHDIVKMFQISAEQKGISLIFQTLSNLPTVIHADE 485

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDF-----IFSVKNNGSSIPED 733
           +RL QI   +LSNA+ F+ +G          L A  +  +       F + + G  I  +
Sbjct: 486 KRLRQILIHLLSNAIKFTEQGGVTFQVKSEKLPAQSEVSNLPPFKVYFQIADTGIGISTE 545

Query: 734 MCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISS 776
             + VF  F   +  R +  G G+GL I +  I + GG +   S
Sbjct: 546 ALEKVFLPFEQASEWRHKSEGTGVGLPITKQLIEMMGGELLFES 589


>gi|134287658|ref|YP_001109824.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134132308|gb|ABO60043.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1140

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 4/214 (1%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ +V  +S+ELR+PL +I+G+  LL  +K   L   +   V  I  S   LL LV
Sbjct: 683 ANQAKSRYVSGLSHELRTPLNSILGYAQLLLQAK-EELTPMRYNAVRTIHRSGEHLLALV 741

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           + +LD+A ++AG ++LN + + L D +  +   +  +  E  +   V + G+L + V   
Sbjct: 742 DGLLDIARIEAGKLQLNIAKVSLADFVAHLTSMLRPQALEKALAFDVQTVGRLPATVRTD 801

Query: 685 QRLL-QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
           Q+ + QI + ++ NA+ F+  G T+ L+ +       F V + G  IP    + +F  F 
Sbjct: 802 QKCMSQILTNLIGNAIRFTPSG-TITLRVSHVLDTLKFEVVDTGPGIPPAELERLFLPFE 860

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              A      G GLGL+I        GG + + S
Sbjct: 861 RGEAAHAYDHGAGLGLTICRLLTQALGGSLEVDS 894


>gi|42784659|ref|NP_981906.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
 gi|42740591|gb|AAS44514.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
          Length = 613

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    I   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWIDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|299536970|ref|ZP_07050275.1| hypothetical protein BFZC1_13138 [Lysinibacillus fusiformis ZC1]
 gi|298727550|gb|EFI68120.1| hypothetical protein BFZC1_13138 [Lysinibacillus fusiformis ZC1]
          Length = 736

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K++ +K   + +VS++LR+PLT+II +TDLLK   +     ++ QY+  +   S  L  L
Sbjct: 511 KSERLKTELITNVSHDLRTPLTSIITYTDLLKKPNITE--EERKQYIHILDKKSERLKVL 568

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           + D+ +++ + +G ++L+ S + L  L+ +        + ++ + +++ +    + ++V 
Sbjct: 569 IEDLFEVSKMASGNIELHRSRVDLTQLIQQAVGEHKEDLTQSQLDLRMTMPHDPIFAYV- 627

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGS-SIPEDMCKSVFN 740
           D Q+  ++   ++ N + ++ +G+ V +   R  +GD  F+VKN     I ED  + +F 
Sbjct: 628 DGQKWWRLIDNLIVNVLKYALEGTRVYVTFKRTADGDAEFTVKNVAKYEISED-AEELFE 686

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF          G GLGL+I +S ++LHG  +SI   D  +  +  RIP+
Sbjct: 687 RFKRADASRHTEGSGLGLAIAQSIVDLHGARMSI-DVDGDLFKVIVRIPA 735


>gi|228964531|ref|ZP_04125643.1| hypothetical protein bthur0004_13780 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795233|gb|EEM42727.1| hypothetical protein bthur0004_13780 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 628

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 140/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 350 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 389

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 390 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 445

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ V 
Sbjct: 446 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNVD 505

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IPE
Sbjct: 506 ADPSI-LVKANRSRIEQVVVNLLSNAIRYTPDGEKIQVSIIEAEDTVKIEIENTGNPIPE 564

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 565 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 615


>gi|254448258|ref|ZP_05061720.1| sensor kinase CusS [gamma proteobacterium HTCC5015]
 gi|198262125|gb|EDY86408.1| sensor kinase CusS [gamma proteobacterium HTCC5015]
          Length = 467

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 26/230 (11%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS---STILLNLVNDIL 628
           F   +++ELR+PLTN+I  T +     LG   S + +Y E + ++      L  +VND+L
Sbjct: 232 FSADIAHELRTPLTNLITQTQV----GLGKSRSLE-EYRELLYSNLEEQERLTKMVNDML 286

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQ------SIATKMHENNIRIKVISDGKLGSFVA 682
            LA  + G++K  +  +   DL  EV++      ++A + H     I+++ +GK      
Sbjct: 287 WLAQSEHGLLKPVWEPL---DLAREVRELFDFFEALAEEKH-----IELVLEGKAPIIQG 338

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           DR  L +  S +LSNA+  + +   V+++  +   G  + SV+N G  IP +    +F+R
Sbjct: 339 DRAMLRRALSNLLSNALRHTPEEGRVLVRLDSSGEGRALLSVQNPGPEIPAEHLPRIFDR 398

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  + + Q  G GLGL+IV+S +  H G++ +  S+ GVT     +P
Sbjct: 399 FYRVDPSRQRQSEGAGLGLAIVKSIVEAHEGNIEV-ISERGVTRFTINLP 447


>gi|295689254|ref|YP_003592947.1| Osmosensitive K channel His kinase sensor [Caulobacter segnis ATCC
           21756]
 gi|295431157|gb|ADG10329.1| Osmosensitive K channel His kinase sensor [Caulobacter segnis ATCC
           21756]
          Length = 892

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 3/219 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E LR+AD  +++ +  VS++LR+PL+ ++G +  L           +   V  I   +  
Sbjct: 652 ETLRRADRFRSALMNSVSHDLRTPLSTVLGASTTLIDYGDKLAKPVRDDLVVSIREEAER 711

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L   V ++LD+  ++ G ++L    I + D+LN   + ++ ++    +      +  L  
Sbjct: 712 LNRYVANLLDMTRIEGGALRLRTDWIDVRDVLNAAAERVSRRLGGRELARDYPRE--LSL 769

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD   L Q+   +L NA+ +S   + + + A  D  + + S+++ G  IP    + VF
Sbjct: 770 VQADASLLEQVVVNVLENAIAYSPPEARIEMAAYEDRSNVVISIEDEGRGIPTSELERVF 829

Query: 740 NRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
           ++F        R +G GLGLSI + FI+  GG ++ +S 
Sbjct: 830 DKFRRMEEPSDRSQGAGLGLSIAKGFIDALGGRIAAASP 868


>gi|255036993|ref|YP_003087614.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949749|gb|ACT94449.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 854

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 121/248 (48%), Gaps = 12/248 (4%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++  S    + L E  E        K  F+ ++S+E+R+PL +IIG+ + LK  +   
Sbjct: 329 FTDIAKSNDYRQQLEEAKEEAEYHSMAKQRFLANMSHEIRTPLQSIIGYAEALKNEE--- 385

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               + Q +E + ++S  LL LVN++LD + + +           +N LLNEV Q +   
Sbjct: 386 --KPRKQDLETLHSASEHLLYLVNEVLDYSRIISDRFTFEERVFSINPLLNEVVQVLRPT 443

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                + +++ +  K   ++  D  RL Q+   +L+NA+ F+  G  V+     + G+  
Sbjct: 444 ALSKGLILRLENSLKPNLYLHGDPFRLRQVLYNLLTNAIKFTENGEVVLKVTGHETGNAA 503

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              + + + G  +  D  + +FN+F       QR+  G GLGLSIV++ +    G++ ++
Sbjct: 504 KIEYQISDTGIGLSADQVERIFNQFEQADPSIQRKYGGTGLGLSIVKALVEGMSGNIHVT 563

Query: 776 SSD-EGVT 782
           S   EG T
Sbjct: 564 SKPGEGTT 571


>gi|220908403|ref|YP_002483714.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865014|gb|ACL45353.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 653

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 123/249 (49%), Gaps = 9/249 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   R E A  E     R  DE    F+  +S+ELR+PL  I+G+  LL+T       
Sbjct: 263 DITQLRRTEAAFAEAETTNRMKDE----FLATLSHELRTPLNAILGWAKLLQTRSFTVEQ 318

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++ +  +E I  ++     LV D+LD++ +  G + L+ + ++L+D L    +++     
Sbjct: 319 TRTA--LETIERNAQQQTQLVADLLDVSQMMRGQLTLSMAPVLLSDPLAAAIETVRLAAV 376

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             NI ++   D ++G    D  RL Q+   +L+NA+ F+ KG  + ++  R N +   +V
Sbjct: 377 AKNIELETEIDPEVGYVRGDAARLQQLVWNLLTNAVKFTPKGGKISVQLERINQEAQITV 436

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I  +    VF+RF        R   G+GLGL++V      HGG V+  SS +G 
Sbjct: 437 SDTGKGIRPEFLPFVFDRFRQEDSSTTREYGGLGLGLALVRQLAEAHGGTVTAGSSGKGQ 496

Query: 782 -TTINCRIP 789
             T   R+P
Sbjct: 497 GATFRVRLP 505


>gi|260752273|ref|YP_003225166.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551636|gb|ACV74582.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 545

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L++ N AL++  +   +F   V++EL++PL ++    D L+  K   L   + Q +  
Sbjct: 293 RSLSDMNTALQQRIDATEAFAADVTHELKNPLASLRSAVDSLEMIKDDHL---RQQLIGV 349

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      L  L+ DI + + VDA + + ++  I L  L+  V +    +    ++RI   
Sbjct: 350 IRDDIQRLDRLITDISEASRVDAEMARSSFEVIDLGPLIQGVTKHCERRPDAADVRIAFA 409

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +   + D  RL ++   ++ NA+ FS     V +   RD  D +  V++ G  +P
Sbjct: 410 RPQSGIAVVLGDGTRLTRVVENLIDNAISFSPPDGLVTITTTRDKDDVVIRVEDEGPGVP 469

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +D  + +F RF  V  +     R  GLGL+I ++ +  H G + ++    G
Sbjct: 470 DDAKEEIFRRFHSVRPSQEAFGRHSGLGLAIAKATVEAHHGTIEVAKRSHG 520


>gi|163801626|ref|ZP_02195524.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4]
 gi|159174543|gb|EDP59345.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4]
          Length = 986

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 10/222 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S   LL +
Sbjct: 465 QASRAKSAFLATMSHEIRTPMNGVLGTARLLIDS---GLNPIQKRYAEIINRSGKTLLAI 521

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           +ND+LD + ++AG +++      L+ ++ +  Q +  K  E  +      +  +G +   
Sbjct: 522 LNDVLDYSKIEAGHLEIRCLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVGRYWKG 581

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           D  R+ Q+ S ++ NA+ F+ +G   I  +    D    +F V + G  I +   K++F+
Sbjct: 582 DVTRINQVLSNLVGNAIKFTEEGEVDIYVSLNPEDESQVLFEVTDTGIGIAKKDQKTLFD 641

Query: 741 RFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            F + A  G  Q  G GLGL+I    +   GG +++  SDEG
Sbjct: 642 AF-TQAESGMHQTGGTGLGLAISRRIVQAMGGELNV-DSDEG 681


>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 954

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 127/265 (47%), Gaps = 25/265 (9%)

Query: 534 PNAQTML-TFVNVTDSVRAERALTEKNEALR--------------KADEIKNSFVQHVSY 578
           PN +  L + V++T   R E AL++  + L               KA + K  F+  +S+
Sbjct: 369 PNGKLALASIVDITMRKRTESALSKAAQDLEWKNWEISEARDQAVKAGQAKTDFLATMSH 428

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  ++G T LL  +   +L+++Q  Y++ +  SS  LL ++NDILD + ++AG  
Sbjct: 429 EIRTPMNGVLGMTTLLLDT---ALSTEQRDYLQTLRHSSESLLRIINDILDFSKIEAGKF 485

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
            +      L   + +    +A    + ++ +  + D +   + + D  R+ Q+ + +L N
Sbjct: 486 TIEQIPFDLRMTIEDTLDMLAPASQDRHLELVGLIDAQTPRTVIGDPGRIRQVLTNLLGN 545

Query: 698 AMDFSSKGSTVILKAARD-NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           A+ F+ +G  +I     D +  F+   F V + G  +  +    +F  F        R+ 
Sbjct: 546 AIKFTEQGEVLIQVLPLDEDPTFVMLRFEVIDTGIGLSPEAQAKMFQAFTQADSSTARKY 605

Query: 753 -GVGLGLSIVESFINLHGGHVSISS 776
            G GLGL+I +  + L GG + + S
Sbjct: 606 GGTGLGLTICKRLVELMGGEIGLQS 630


>gi|300864747|ref|ZP_07109599.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300337257|emb|CBN54747.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 1008

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 23/235 (9%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--------------SKLGSLNSKQ 606
           A ++ D++K  F+  VS+ELR+PLT+++GF  L++                K+     + 
Sbjct: 510 AEKEVDQMKTDFISTVSHELRTPLTSVLGFAKLIQKKLEENVFPIVVTEDKKVQRAVKQV 569

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ I +    L +L+ND+LD+A ++AG +      + ++DL++  +   AT     N
Sbjct: 570 GDNLQIIVSEGQRLTDLINDLLDVAKMEAGKIDWKMQPMKVDDLID--RAIAATFALFEN 627

Query: 667 IRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723
             ++ I D    L   V DR +L+Q+   +LSN++ F+ KG   +   A+  GD I  S+
Sbjct: 628 KGLEPIKDIEENLPELVGDRDKLIQVMINLLSNSIKFTDKG--FVTCQAKKIGDKIKISI 685

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + G  I E     VF +F  V      + +G GLGL I +  I  HGG + + S
Sbjct: 686 IDTGMGISEADQPKVFEKFKQVGETLTDKPKGTGLGLPICKQIIEHHGGKIWVES 740


>gi|289665486|ref|ZP_06487067.1| histidine kinase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 578

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 11/228 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +AL   D  ++ F+  +S+ELR+PL  +I    L+ T ++    ++Q + ++ ++ +++ 
Sbjct: 198 QALASRDA-QSRFISTMSHELRTPLNAVINCAQLIDTEQM---PAQQRELLQAVTVNASA 253

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L + VN++LD+A++D G ++L    + L D++  VK   +T      I + V  D     
Sbjct: 254 LRHRVNEVLDVASIDGGRLQLQSKPLNLLDVVTTVKAVCSTAASSKGITLDVRVDSPQTP 313

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDM 734
            V  D  R+ Q+ S ++ NA+ F+  G TV L       ++      +V + G  +P+D 
Sbjct: 314 HVMGDEGRIEQVISNLVINAIKFTPAGGTVDLLIDATQVQERWSIAVTVTDTGIGVPDDQ 373

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              +F  F  +S        GVGLGL I  S  +  GG +++S +  G
Sbjct: 374 KAYIFTPFTQLSTGFSRVEGGVGLGLYIALSVSDAMGGSLTVSDNPAG 421


>gi|260587420|ref|ZP_05853333.1| sensory box histidine kinase [Blautia hansenii DSM 20583]
 gi|260542287|gb|EEX22856.1| sensory box histidine kinase [Blautia hansenii DSM 20583]
          Length = 471

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 115/217 (52%), Gaps = 5/217 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  F+ +VS++ RSPLT+I G+T+ +    +      Q +Y++ +   +  L  L   +L
Sbjct: 245 QRKFISNVSHDFRSPLTSIKGYTEAILDGTIPP--EMQEKYLKIVVYETDRLYKLTQSML 302

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            L  +D    +L+YS   +N  +    ++      +  I I++   G+     AD  ++ 
Sbjct: 303 TLNNLDEKGRQLDYSDFDINRTIKTTAEAFEGICRDKRISIELFLTGQTLFVHADMGQIQ 362

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAH 747
           Q+   ++ NA+ FSS  S + +++   +     SVK+ G  IP++    +++RF   ++ 
Sbjct: 363 QVLYNLIDNAIKFSSPDSIIKIESTLKHETVFISVKDTGCGIPKESLTKIWDRFYKIDSS 422

Query: 748 RGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           RG+ R+G GLGL+IV+  IN H  ++++ S+ EGV T
Sbjct: 423 RGKDRKGTGLGLAIVKEIINSHKQNINVIST-EGVGT 458


>gi|281417241|ref|ZP_06248261.1| histidine kinase [Clostridium thermocellum JW20]
 gi|281408643|gb|EFB38901.1| histidine kinase [Clostridium thermocellum JW20]
          Length = 501

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+ + +      K+ F+  +++E ++PL  I      ++      L  +  +Y+  I  +
Sbjct: 221 EQKKYIENLARFKDEFLYGITHEFKTPLVVISSALQAIEALCRDELTDRVKKYLNRIKQN 280

Query: 617 STILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +   + LVN++LD+A ++AG   I K N   + L  L+ E   S++       +++   S
Sbjct: 281 TFRQIRLVNNLLDIARIEAGHIKIFKRNLDIVALTRLITE---SVSMFADLKGVQLLFYS 337

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +        D ++  +I   +LSNA+ F+ K  +V ++ +   G     VK++G  IP+D
Sbjct: 338 NIDKKIIAIDEEKYERIMLNLLSNAIKFTPKDRSVYVEVSAKEGCVEIKVKDSGIGIPKD 397

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             K++F RF  V ++      G G+GLS+V  F+N  GG +S++S +   +T    +P
Sbjct: 398 KIKTIFERFGQVDSSLSRNAEGTGIGLSLVRMFVNAMGGEISVTSEENIGSTFTVTLP 455


>gi|220919229|ref|YP_002494533.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957083|gb|ACL67467.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 376

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 137/287 (47%), Gaps = 26/287 (9%)

Query: 511 RKSLQGTLELLSDSVLEYSII----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           +++L+GT   L   +   + +    PL   + ++   +VTD+              R+A+
Sbjct: 108 KRALEGTARRLELPIQRRTYLAALSPLLRGEVLVLLRDVTDA--------------RRAE 153

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             +  FV + S+ELR+P+  I    + L +  +    + ++ +VE ++  +  L  L  D
Sbjct: 154 ATRRDFVANASHELRTPIAAIRAAAETLLSGAVEDPAAGRA-FVEIVARHAERLSRLTQD 212

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           +LDL+ +++       + + +  L  +V +  A+      + ++  ++   G+ V AD +
Sbjct: 213 LLDLSRIESRQWTFELAPVGVGALARQVLELFASAARAKGLALR--AEVPAGAVVRADGR 270

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
            L Q+   ++ NA+ +++ GS V + AARD   ++ SV + G  I       +F RF  V
Sbjct: 271 ALEQVLVNLVDNAVKYTAAGS-VTVSAARDGDAWVVSVADTGPGIERHHLPRLFERFYRV 329

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +     + G GLGL+IV+  +   GG V + S   G T +  R+P+
Sbjct: 330 DSGRSRDQGGTGLGLAIVKHLVQGMGGEVGVESGAGG-TRLWARLPA 375


>gi|165869675|ref|ZP_02214333.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|228929899|ref|ZP_04092914.1| hypothetical protein bthur0010_45820 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936160|ref|ZP_04098963.1| hypothetical protein bthur0009_46010 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948596|ref|ZP_04110875.1| hypothetical protein bthur0007_47210 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124415|ref|ZP_04253603.1| hypothetical protein bcere0016_46990 [Bacillus cereus 95/8201]
 gi|164714504|gb|EDR20023.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|228659067|gb|EEL14719.1| hypothetical protein bcere0016_46990 [Bacillus cereus 95/8201]
 gi|228811095|gb|EEM57437.1| hypothetical protein bthur0007_47210 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823505|gb|EEM69334.1| hypothetical protein bthur0009_46010 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829815|gb|EEM75437.1| hypothetical protein bthur0010_45820 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 365

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 125/242 (51%), Gaps = 7/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 121 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 180

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G+++LN   I +++LL ++ + +   + ++++  
Sbjct: 181 IAY--TKSQRLESLIDELFEITRMNYGMLQLNKKPIDISELLIQLDEELYPLLEKHHLEA 238

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DN + +  V N G S
Sbjct: 239 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNEEVVVQVMNYGDS 297

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 298 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTIFEVR 356

Query: 788 IP 789
           +P
Sbjct: 357 LP 358


>gi|296115898|ref|ZP_06834522.1| signal transduction histidine kinase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977586|gb|EFG84340.1| signal transduction histidine kinase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 971

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 7/216 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+ H+S+E+R+PL  I G T L+      S    Q + +E +      L+ L++D+L
Sbjct: 496 KGRFLAHLSHEVRTPLNAIFGMTSLMLRD---SPREDQRRRLELMRFEGAGLVRLLDDVL 552

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+A+++   +++ +    L DL  +    +  +  E  +      D    +   D  RL 
Sbjct: 553 DMASLETTRIEIVHVPFNLEDLCTQFADVMVERCAEKGLAFTHEFDPLPTTISGDPTRLH 612

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+   +L NA+ F+  GS   +  A   G    +  F + N G  IP  +   VF+ FV 
Sbjct: 613 QLLGNVLDNALKFTQTGSIRFVVRAEHCGPGVWEIAFELTNTGPGIPPHVLNRVFDEFVR 672

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
                   G GLGL+IV       GG VS+ + D G
Sbjct: 673 GPDTEFVPGSGLGLAIVSRLAVAMGGRVSLDNIDGG 708


>gi|168182973|ref|ZP_02617637.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237794414|ref|YP_002861966.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182673814|gb|EDT85775.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229262067|gb|ACQ53100.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 477

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 128/231 (55%), Gaps = 16/231 (6%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ----SQYVEYISASSTILLNLVNDI 627
           F  ++S++L++P+  I     ++  +    L++K+     +Y+  I  +   LL LVN+I
Sbjct: 222 FYANISHDLKTPINIIYSAIQVMNMA----LDNKKIDTIEKYIGVIKQNCYRLLRLVNNI 277

Query: 628 LDLATVDAGI--MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++   +++G   +KLN + IV   L+ ++  S++T +  N++ I   +D +      D+ 
Sbjct: 278 VNTNKIESGCCKIKLNNNNIV--SLVEDIVTSVSTYVENNDMDIIFDTDTEEKIIACDKD 335

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVS 744
            + ++   ++SN++ +  +G   I    +D  D  I SVK+NG  IPE++ K+VFNRFV 
Sbjct: 336 MIERVVLNLISNSVKYKQRGKGSIQVTVQDKEDRVIVSVKDNGIGIPENIQKNVFNRFVQ 395

Query: 745 NAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  +         G+GL++V+S I++H G++ I+S +   T I   +PS++
Sbjct: 396 SNRKEYDLTTCSSGIGLALVKSIIDMHDGNIQINSRENKGTEIIFELPSRK 446


>gi|12483718|gb|AAG53733.1|AF178425_3 KinC [Lactococcus lactis subsp. cremoris MG1363]
 gi|2182992|gb|AAC45385.1| histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 475

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 127/240 (52%), Gaps = 18/240 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           KA+  +  FV +VS+ELR+PLT++  + + L+    G+++ K+  S ++   +  +    
Sbjct: 223 KAERERRLFVSNVSHELRTPLTSVKAYLEALED---GAIDDKETASSFIRCFTNRNQSDD 279

Query: 622 NLVNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHE----NNIRIKVIS 673
           ++++D+L L+ +D   + LN   I     L+  +N + Q + T+ ++    N   ++  S
Sbjct: 280 SVISDLLTLSRMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYS 339

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +   + D  ++ Q+   I+ NA+ +S KG T+ +       D + S+K+ G  IP+ 
Sbjct: 340 DKPIWVEI-DTDKIAQVIDNIIGNAIKYSPKGGTITIYVETRERDVLISIKDEGMGIPKS 398

Query: 734 MCKSVFNRF--VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCRIP 789
               +F+RF  V NA R  +  G GLGLSIV   + +HGG +  SS  EG  TT +  +P
Sbjct: 399 DLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|289668335|ref|ZP_06489410.1| histidine kinase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 578

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 11/228 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +AL   D  ++ F+  +S+ELR+PL  +I    L+ T ++    ++Q + ++ ++ +++ 
Sbjct: 198 QALASRDA-QSRFISTMSHELRTPLNAVINCAQLIDTEQM---PAQQRELLQAVTVNASA 253

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L + VN++LD+A++D G ++L    + L D++  VK   +T      I + V  D     
Sbjct: 254 LRHRVNEVLDVASIDGGRLQLQSKPLNLLDVVTTVKAVCSTAASSKGITLDVRVDSPQTP 313

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDM 734
            V  D  R+ Q+ S ++ NA+ F+  G TV L       ++      +V + G  +P+D 
Sbjct: 314 HVMGDEGRIEQVISNLVINAIKFTPAGGTVDLLIDATQVQERWSIAVTVTDTGIGVPDDQ 373

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
              +F  F  +S        GVGLGL I  S  +  GG +++S +  G
Sbjct: 374 KAYIFTPFTQLSTGFSRVEGGVGLGLYIALSVSDAMGGSLTVSDNPAG 421


>gi|229826834|ref|ZP_04452903.1| hypothetical protein GCWU000182_02213 [Abiotrophia defectiva ATCC
           49176]
 gi|229788989|gb|EEP25103.1| hypothetical protein GCWU000182_02213 [Abiotrophia defectiva ATCC
           49176]
          Length = 471

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           ++ +  F+ ++S++ RSPLT+I GF T ++  +    L +K   Y+  I   +  L  L 
Sbjct: 244 EDYQRKFISNISHDFRSPLTSIKGFATAMIDGTIPPELYNK---YLNTICFETDRLTKLT 300

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           + +++L   D+    L+     L+ ++ +  ++   K  E  I + +I +G     +AD+
Sbjct: 301 SGLIELGKFDSHQALLDIKEFDLHSMIKQTVEAFEGKCREKYISLNLIFEGDESPVMADK 360

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV- 743
            ++ Q+F  ++ NA+ FS   S + +         I SVK+ G  IP++  K ++ RF  
Sbjct: 361 GKIEQVFYNLIDNAIKFSHNDSDITITTKSKGNKVIVSVKDYGVGIPKESLKKIWERFYK 420

Query: 744 SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +++ RG+ ++G GLGL+IV+  I  HG  + + S++   T
Sbjct: 421 TDSSRGKDKKGSGLGLAIVKEIIQSHGEEIDVISTENAGT 460


>gi|307721594|ref|YP_003892734.1| histidine kinase [Sulfurimonas autotrophica DSM 16294]
 gi|306979687|gb|ADN09722.1| histidine kinase [Sulfurimonas autotrophica DSM 16294]
          Length = 654

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 125/240 (52%), Gaps = 18/240 (7%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ +++K  F+ ++ +E R+P+  I+GF +LLK++    L+  Q++Y++ I  SS  L+N
Sbjct: 157 KEVEKLKTKFLSNIGHEFRTPMNGILGFIELLKST---DLDEHQNEYLDMIDYSSKNLMN 213

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT---KMHENNIRIKVISDGKLGS 679
            +  +LDL+ + +G +++        +LL E+++ I T   K + N + +    D KL  
Sbjct: 214 NIETLLDLSQLQSGRLEVELEPF---NLLVEMEKLIYTCFDKANNNGVGVMSFIDPKLPQ 270

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFI-FSVKNNGSSIPE 732
               D +++LQ+   I+ NA+ F+  G  VI     LK  ++    I F VK+NG  + +
Sbjct: 271 ELEGDAKKILQVMRSIIQNAIKFTPHGGKVIIEVKLLKRLQNGACTIGFGVKDNGQGMSQ 330

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +    +   F + +H  +R G+GL LS     + L    + I+S     T +N  +  KE
Sbjct: 331 EQIALMDEPFTAGSHADERLGIGLSLS--SGLVKLMDSELRINSEIGSGTYVNFVLNFKE 388


>gi|296536415|ref|ZP_06898515.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
           ATCC 49957]
 gi|296263265|gb|EFH09790.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
           ATCC 49957]
          Length = 1111

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 6/246 (2%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P  QT L    +    R + AL +  EA   A+  K+ +V  +S+ELRSPL  I+G+  L
Sbjct: 631 PRRQTSLLMSEIRAHQRTDAALQKAKEAAEAANMAKSRYVIGISHELRSPLNAILGYAQL 690

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+     ++  ++   +  I  S   L  L+  +LD++ ++AG ++L    I   + L++
Sbjct: 691 LERDT--AIPERRRDGLRTIRRSGEHLAALIEGLLDISKIEAGRIELYRDEIRFPEFLDQ 748

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           + Q +  +    +I        ++   V  D +RL QI   +LSNA+ F+  G   +   
Sbjct: 749 IVQMLRLQAEAKSIAFTFDPPERMPEVVHTDERRLRQILINLLSNAIKFTRAGGVTLRLR 808

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGG 770
            R     I  V + G  I ED    +F  F   +N+H     GVGLGL+I ++ + + GG
Sbjct: 809 FRSEVAEI-EVIDTGIGIAEDDLARIFEPFQRGANSHAPSTPGVGLGLTITKTLVEVMGG 867

Query: 771 HVSISS 776
            +++ S
Sbjct: 868 DIAVWS 873


>gi|238789735|ref|ZP_04633517.1| Aerobic respiration control sensor protein arcB [Yersinia
           frederiksenii ATCC 33641]
 gi|238722094|gb|EEQ13752.1| Aerobic respiration control sensor protein arcB [Yersinia
           frederiksenii ATCC 33641]
          Length = 778

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 125/235 (53%), Gaps = 16/235 (6%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++L   +S+Q +Y
Sbjct: 264 RDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---DSEQLKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      +    +  
Sbjct: 321 LKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLLVQPKGL-- 378

Query: 670 KVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKN 725
           K I + +L      + D  RL QI   ++ NA+ F+ +G  V+ +  R+  D  IF V++
Sbjct: 379 KFIMEPQLPLPEKIITDGTRLRQILWNLIGNAVKFTQQGKIVV-RVRREGSDRLIFEVED 437

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
           +G  IPED    +F  +  V +++ G+   G G+GL++ +      GG +++ S+
Sbjct: 438 SGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492


>gi|189464626|ref|ZP_03013411.1| hypothetical protein BACINT_00969 [Bacteroides intestinalis DSM
           17393]
 gi|189436900|gb|EDV05885.1| hypothetical protein BACINT_00969 [Bacteroides intestinalis DSM
           17393]
          Length = 783

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            V  E  L +  +    A E+K SF+ ++S+E+R+PL  I+GFT+LL       +  ++ 
Sbjct: 538 QVEREEQLIQAKQMAENA-ELKQSFLNNMSHEIRTPLNAIVGFTNLLVGEGGDEIEPEEK 596

Query: 608 Q-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +  +E I+ ++ +LL LVND+++++ +D+G + L      +  ++ E+  +  T + + +
Sbjct: 597 KAMLEIINRNNELLLKLVNDVVEISRLDSGNLDLKIKEWNMTTVVKEIYMAYQT-LIKPS 655

Query: 667 IRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVK 724
           ++  ++ D  L   V  DR R +Q+ S  L+NA  F+  GS T+     +++      V+
Sbjct: 656 LQFHLVLDESLSLPVRIDRMRFIQVISNFLNNADKFTRSGSVTLGCSVDKEHRKVSVYVQ 715

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           + G  I E     +F+RF       Q  G GLGLSI +  I    GH+ + S
Sbjct: 716 DTGKGIDEKELMMIFDRFYKTDEFEQ--GSGLGLSICKVIIERLCGHIEVQS 765


>gi|330447436|ref|ZP_08311085.1| aerobic respiration control sensor protein arcB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491627|dbj|GAA05582.1| aerobic respiration control sensor protein arcB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 789

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 23/253 (9%)

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL KA   K SF+  +S+ELR+PL  I+G + +L  ++   L  +Q  Y
Sbjct: 264 RDITERKKYEDALEKASSDKTSFISTISHELRTPLNGIVGLSRMLLDTE---LTDEQRGY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  L N+ NDI+DL   D   ++L    +  ++ ++E+         +  +R 
Sbjct: 321 LRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFHEFVDEMGNISQLMAEQKGLRF 380

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVK 724
            +     L   +  D  RL Q+   ++ NA  F+ +G  VIL  + +    + D +F V+
Sbjct: 381 DLECLTDLPKNIEVDSTRLRQVLWNLIGNATKFTKQGG-VILSVSSEIHEHDADIVFEVE 439

Query: 725 NNGSSIPEDMCKSVFNRFVS------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS- 777
           ++G  IP+    ++F  +        N H     G G+GL++    + L GG +++ S  
Sbjct: 440 DSGVGIPKSEIDNIFAMYYQVKQGDDNIH---AVGTGIGLAVSRQLVQLMGGDITVDSEV 496

Query: 778 DEGVT-TINCRIP 789
            EG T  +  R+P
Sbjct: 497 GEGSTFRVKIRVP 509


>gi|229074754|ref|ZP_04207773.1| hypothetical protein bcere0024_13090 [Bacillus cereus Rock4-18]
 gi|228708352|gb|EEL60506.1| hypothetical protein bcere0024_13090 [Bacillus cereus Rock4-18]
          Length = 617

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 142/292 (48%), Gaps = 33/292 (11%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 339 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 378

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + ++      ++   + Y + 
Sbjct: 379 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIQ----DGVSKDTTYYTDV 434

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL  +T  + +L+ ++   +   M E  +++ V 
Sbjct: 435 ILEETENMNRLIVEMLELAKLESGTYKLEMTTFSIGELIQQIHTKLLFSMEEKQLQVDVD 494

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +D  +  FV A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IP
Sbjct: 495 ADTSI--FVKANRSRIEQVVVNLLSNAIRYTPDGERIKVSVIETEDTVKVEIENTGNPIP 552

Query: 732 EDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           E+  + +++RF   +A R +   G GLGLSIV++ ++LH     + +++  V
Sbjct: 553 EESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAKYGVYNTNNSV 604


>gi|220929081|ref|YP_002505990.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999409|gb|ACL76010.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 594

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 145/291 (49%), Gaps = 20/291 (6%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNE 560
           +IT    E+KS Q T   ++   L +++ P+ + +  +T   V V D   +ER      E
Sbjct: 317 MITKVIKEKKSFQVTKNWMNKK-LRFTLSPIIDNKGNVTGCVVLVLDISESERL-----E 370

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASST 618
            LRK       FV +VS+E R+PLT I G  + L     G++++K+   +Y   + + + 
Sbjct: 371 QLRK------DFVANVSHEFRTPLTVIKGSIEALID---GTIDNKEDIERYYGRMLSETK 421

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  LV D+L+L+ + +G + +N   + +  LL+++ +S+ T      I I       + 
Sbjct: 422 SLQRLVGDLLELSRLQSGKISVNNELVHIPSLLSDITKSMQTIAIMKEISIVYTPINDVP 481

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   D  RL Q+F   + NA+ +S + + + ++AA  +     S++++G  I E+    V
Sbjct: 482 AVSGDYDRLRQLFVIFIDNAIKYSPQKTEIHIRAAVKS-TLEISIEDHGYGISEEELPYV 540

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++RF       +  G GLGL+I +  I LH G V I SS    TT+   +P
Sbjct: 541 WDRFYKTDKSREGGGTGLGLAIAKHLIKLHKGSVIIKSSLGKGTTVTVSLP 591


>gi|83594752|ref|YP_428504.1| periplasmic sensor Signal transduction histidine kinase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83577666|gb|ABC24217.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 564

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 114/231 (49%), Gaps = 8/231 (3%)

Query: 554 ALTEKNEAL-RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           AL E  E L  + D I+  F   V++E+++PLT++    + +  +++   N +Q + +  
Sbjct: 318 ALREMTEVLWARMDAIER-FAADVAHEIKNPLTSLRSAVETV--ARIDDPN-QQKRLMAV 373

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      L  L+ DI D + +DA + +    ++ +  +L  + +  A +  +  + IKV+
Sbjct: 374 IVDDVQRLNRLITDISDASRLDAELSRAEMESVEIRPMLEMLAEVHAAEAEQRGVTIKVM 433

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D G          RL+Q+F  ++ NA+ FS  G T+ L+A R  G  + +V ++G  IP
Sbjct: 434 GDAGDALGIEGLEGRLVQVFRNLIGNAVSFSPPGGTITLRAWRTKGKVVITVADDGPGIP 493

Query: 732 EDMCKSVFNRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSSDEG 780
                 +F RF S   R ++ G   GLGLSI +  +  H G +   +  +G
Sbjct: 494 PGKEADIFKRFYSERPREEKFGTHSGLGLSISQQIVETHRGTIRAENRRDG 544


>gi|303246335|ref|ZP_07332615.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492398|gb|EFL52270.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 545

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 121/265 (45%), Gaps = 36/265 (13%)

Query: 536 AQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            QT+L  +  +VT+ VRAE+A     + LR              ++LRSPL  I G  + 
Sbjct: 298 GQTLLFSIVHDVTNRVRAEQARERAEQVLR--------------HDLRSPLAGIAGLANH 343

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L     G L+++  +  E I  ++T L  LV   LDL  ++ G   L    + +   L  
Sbjct: 344 LVG---GGLSAEHREMAEVIRETATRLYTLVGRNLDLHKIEQGSYTLRPEPVPMAPFLAG 400

Query: 654 VKQSIATKMHENNIRI----KVISDGKLGSFVADRQRLLQI-FSKILSNAMDFSSKGSTV 708
           + + +AT     ++R+    +   DG  G  VA    LL I FS +++NA++ +  G+ V
Sbjct: 401 MAREVATLAQARHVRLILAGEGFDDGGRGPSVAGEPDLLAILFSNLVTNALEAAPPGTAV 460

Query: 709 ILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            L     +AR       +V +N   +PED+    F ++ ++   G+R G GLG     + 
Sbjct: 461 RLTLKTVSARAE-----TVIHNQGVVPEDIRPRFFKKYATS---GKRNGTGLGAYNAMAV 512

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
             LHGG +   S     T I  R+P
Sbjct: 513 ARLHGGDIDWESDAATGTRITVRLP 537


>gi|229845210|ref|ZP_04465344.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 6P18H1]
 gi|229811921|gb|EEP47616.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 6P18H1]
          Length = 598

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  IAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    +
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKQ 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDYYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|299821889|ref|ZP_07053777.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
 gi|299817554|gb|EFI84790.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
          Length = 591

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 3/230 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++  + ++  FV +VS+EL++P+T + GF + L    +    +   +++  +   S  L 
Sbjct: 360 IKHLENVRTEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EALLKKFLGIMKDESDRLH 418

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ DIL L+ ++   + +N   + +   + E  Q++     + NI + +    K     
Sbjct: 419 RLILDILALSRIEQHALPINQEVVDIYQTITEAAQTVTESAKQKNIDLVLPHAAKPLPIE 478

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  +L QI   ++SNA+ ++ +  TV +       + +F+V +NG  IP    + VF R
Sbjct: 479 TDNDKLKQIIINLVSNAVAYTPENGTVKVDVEESPHEVLFTVADNGIGIPAKEIERVFER 538

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V  A      G GLGLSIV+      GG + ++S +   TT +  +P
Sbjct: 539 FYRVDKARSRYSGGTGLGLSIVKHLTEQLGGRIEVASVEGEGTTFSIHLP 588


>gi|240144916|ref|ZP_04743517.1| two component sensor histidine kinase [Roseburia intestinalis
           L1-82]
 gi|257203055|gb|EEV01340.1| two component sensor histidine kinase [Roseburia intestinalis
           L1-82]
          Length = 529

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 16/266 (6%)

Query: 540 LTFV--NVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           L FV  +VTD+   E    R + +   A ++AD  K+ F++ +S+E+R+PL +IIG +  
Sbjct: 116 LVFVRRDVTDNYEEEQNRQREIYDAMLAAKRADRSKSEFLERMSHEIRTPLNSIIGLS-Y 174

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  + LG    K  +  + I  S+  L + ++DIL+L+ +++G +  +  +      L  
Sbjct: 175 LSRANLGD-EKKVLENFDKIEMSAQFLRSCMDDILNLSLLESGRVAFHEESTDFEAFLTH 233

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS-KGSTVILK 711
           +++  + K  E  I   V   G     ++ DR++L +  S IL NA+ ++  +GS   + 
Sbjct: 234 IEKEFSDKAQEKKISFSVQRRGSFADQYLFDREKLNEALSAILENAVKYTQPEGSVFFII 293

Query: 712 AARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFI 765
                G+    F F +++NG  + ++    +F+ F     R      G GLGL+I ++ I
Sbjct: 294 ELFTRGEQETIFRFEIRDNGIGMEQNFLPHIFDAFAQEDDRNTTLSGGTGLGLTISKNII 353

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
           +  GG + + S     +     +P K
Sbjct: 354 DFMGGKIDVYSEKGKGSAFVVTVPLK 379


>gi|75908983|ref|YP_323279.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75702708|gb|ABA22384.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1557

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 17/262 (6%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLL 594
            MLT         A   L E  +  R   E    IK+ F+  +S+ELR+PL  I+G+  LL
Sbjct: 1151 MLTLGQQCAQAIARSQLYEAEKNARAVAESTNRIKDEFLAVLSHELRTPLNPIMGWAKLL 1210

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            +T        KQ   +E I  ++ +   L++D+LD++ +  G + LN   + L DL N V
Sbjct: 1211 RTRTYKEETIKQG--LETIERNAKLQTQLIDDLLDVSRILRGKLNLN---VCLVDLRNTV 1265

Query: 655  KQSIAT---KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +  + T        +I I  I   +    + D  RL Q+   ++SNA+ F+     V ++
Sbjct: 1266 QAGLETVRLAAEAKSIAIHTILSDEPVQVMGDGDRLQQVIWNLVSNAVKFTPSEGRVEVR 1325

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
              +   D    V + G  I  +    VF  F     +  R   G+GLGL+IV   + LHG
Sbjct: 1326 LEQVGRDAQIQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGGLGLGLAIVHHLVELHG 1385

Query: 770  GHVSISSS--DEGVTTINCRIP 789
            G V   S+  D+G  T   ++P
Sbjct: 1386 GTVVAQSAGEDQG-ATFTVKLP 1406


>gi|253564070|ref|ZP_04841527.1| FrrD [Bacteroides sp. 3_2_5]
 gi|251947846|gb|EES88128.1| FrrD [Bacteroides sp. 3_2_5]
 gi|301161630|emb|CBW21170.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 479

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 119/217 (54%), Gaps = 4/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++GSLN +Q Q  + I  +S  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPISAIMMSLQLLEDKRVGSLNGEQEQLSKNIRDNSQRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG +++        +L+    ++   +  + NI+I+V     K+   
Sbjct: 311 DITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVDYPQEKIPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   V++   R   ++I   V++ G  I     +S+F
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVVI-GVRHKKEYIELYVQDFGKGIDPRYHQSIF 429

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 430 DRYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVQS 465


>gi|261341295|ref|ZP_05969153.1| sensor histidine kinase KdpD [Enterobacter cancerogenus ATCC 35316]
 gi|288316600|gb|EFC55538.1| sensor histidine kinase KdpD [Enterobacter cancerogenus ATCC 35316]
          Length = 895

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 120/261 (45%), Gaps = 7/261 (2%)

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNII 588
           +P  Q +L TF  +  S     ALT   E  R A E   I+NS +  +S++LR+PLT + 
Sbjct: 624 IPEQQRLLETFTLLVASALERLALTASEEQARLASERESIRNSLLAALSHDLRTPLTVLF 683

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G +++L T  L +  SK +     I         LVN++LD+A + +G   L    + L 
Sbjct: 684 GQSEIL-TLDLAAEGSKHAMQASEIREHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLE 742

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++    + +   +   +I + +     L     D     ++   +L NA  ++   + +
Sbjct: 743 EVVGSALKMLEPGLGGRHIALNMPE--PLTLIHVDGPLFERVLINLLENAGKYAGPKAQI 800

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            + A+ +       V + G  IP+   +++F +F          GVGLGL+I E+ + +H
Sbjct: 801 GMNASVEEQALRLEVWDTGPGIPQGQEQAIFEKFARGNKESAIPGVGLGLAICEAIVEVH 860

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +S ++  EG       +P
Sbjct: 861 GGTLSAANRPEGGARFCVTLP 881


>gi|254478763|ref|ZP_05092131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035275|gb|EEB75981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 456

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 168/354 (47%), Gaps = 26/354 (7%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           ++ GV  F    RI + N + + +   EE  L+ G  +  +  +   Y       ++F  
Sbjct: 121 IANGVIAFDNAERILMMNDSAKKILGIEEKDLT-GRRVFEVIRSSKLY-------EVFET 172

Query: 503 IITSFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           +  +     KSL+  L   +  +  Y S I  P +   L FV V D +      TE    
Sbjct: 173 LRKNKVLSSKSLE--LNFFNKHLKVYISPILHPVSHVNLGFVLVIDDI------TE---- 220

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +RK +++++ FV +VS+ELR+PLT+I GF + L++  + +  +++ ++++ I   +  L 
Sbjct: 221 MRKLEKMRSEFVANVSHELRTPLTSIRGFIETLRSGAIENPEARE-KFLDIIDFEAERLT 279

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            L+NDIL L+ ++          I ++  + ++   +     + +I +K  ++ G L + 
Sbjct: 280 RLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNL-TI 338

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +A+R R  Q+   ++ N + ++ +G  V +    +    I  V++NG  IP+D    +F 
Sbjct: 339 IANRDRFHQMMINLIDNGIKYTQEGGFVKVSTRLEGEKIIIEVEDNGIGIPKDKIPRLFE 398

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF  V  +   +  G GLGL+IV+  +    G +S+ S     T    R   K+
Sbjct: 399 RFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRFNRKD 452


>gi|170703164|ref|ZP_02893975.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170131926|gb|EDT00443.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 528

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +++ELR+ L  +     +L+T  L       +Q  + +      L  LV+D+LD+ 
Sbjct: 161 FIAMLAHELRNHLAPLRHSVSVLQT--LPDAAPMLAQCRDAVHRQVGQLTRLVDDLLDVG 218

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            + AG ++L+ + + + D++    +SI  K+      ++V    +      D  RL+Q+ 
Sbjct: 219 RITAGKVELDNAPVTVRDVVCRGMESIQPKLAARQQHLRVELPPEPVVVRGDAARLVQVL 278

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             +L NA  FS  G+ + + A R+       V ++G  I     +++F+ F  +   G+R
Sbjct: 279 HNLLDNASKFSPPGARIDVAADREGSTVAIRVTDHGVGIAAGSLETIFDLFDQDGVPGRR 338

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
              G GLGL+I  SFI LHGG +S  S   G   T   R+P
Sbjct: 339 PSDGFGLGLAICRSFIELHGGRISAESEGPGHGATFTVRLP 379


>gi|169612351|ref|XP_001799593.1| hypothetical protein SNOG_09297 [Phaeosphaeria nodorum SN15]
 gi|160702493|gb|EAT83489.2| hypothetical protein SNOG_09297 [Phaeosphaeria nodorum SN15]
          Length = 545

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 133/264 (50%), Gaps = 14/264 (5%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKN--EALRKADEIKNSFVQHVSYELRSPLTNI 587
           I P+    T+L F  VT  +  ER   E++   A  +A ++K+ F+ ++S+E+R+P+   
Sbjct: 117 ITPIFKDDTLLGFSKVTRDL-TERRKAEQSLISAYEEASKLKSEFLANMSHEIRTPMH-- 173

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G    L       L+  Q      I  S  +LL ++NDILD + + +G   +++  I +
Sbjct: 174 -GMLSALTLLLDTKLDEDQLDLAHVIQESGDVLLQVINDILDYSKLASGSFSVSHDIISV 232

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
            D++  V ++   K+++  ++++++ D +L  S   D  R  QI    LSNA  F+ +G 
Sbjct: 233 TDIVQSVFRA-HLKLYKPEVKLEILLDPRLPKSAEGDSLRYRQIIQNFLSNATKFTEEGY 291

Query: 707 T-VILKAARDNGD-FIF--SVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSI 760
             ++ K  ++  D FI    V + G  +P+D    +F  F+   N+   + +G GLGLSI
Sbjct: 292 VRIVAKLHKEEDDHFIIMSEVIDTGIGVPQDSSDKLFTPFLQFDNSTTKRFKGTGLGLSI 351

Query: 761 VESFINLHGGHVSISSSDEGVTTI 784
            +S   L GG +    + EG  ++
Sbjct: 352 CKSLAELMGGSIGYFPNPEGRGSV 375


>gi|153806756|ref|ZP_01959424.1| hypothetical protein BACCAC_01028 [Bacteroides caccae ATCC 43185]
 gi|149131433|gb|EDM22639.1| hypothetical protein BACCAC_01028 [Bacteroides caccae ATCC 43185]
          Length = 633

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 131/247 (53%), Gaps = 9/247 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  + E  L  + +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++    N
Sbjct: 387 DITDLKQIEEMLVNERDRAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLASAE----N 442

Query: 604 SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             + + Y   IS ++ +LLNL+NDI+DL+ ++AG ++L+ +   L +LL+E     A ++
Sbjct: 443 VVEKELYNSLISHNNELLLNLINDIIDLSKIEAGYLELHQNWFNLTELLDECVAEYA-RL 501

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + + +             D+ R+ QI +  LSNA+  + +G   +     D       
Sbjct: 502 LPSGVELLTSYPEHDALVELDKLRIKQILNNFLSNALKNTIRGYVEVFYEI-DKHCVRIG 560

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           VK+ G  IP++M + +F RF       Q  GVGLGLSI +S ++   G + + S     T
Sbjct: 561 VKDTGCGIPQNMLEKIFERFEKVDSFAQ--GVGLGLSICKSIVDKMNGRIQVYSQLGLGT 618

Query: 783 TINCRIP 789
           T    +P
Sbjct: 619 TFIAELP 625


>gi|323528534|ref|YP_004230686.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1001]
 gi|323385536|gb|ADX57626.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           CCGE1001]
          Length = 720

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 103/201 (51%), Gaps = 8/201 (3%)

Query: 552 ERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ER    + EA R A+     K  F+ ++S+ELR+PL  I+G+  +L+     SL+++  +
Sbjct: 243 ERDAAVEREARRSAEAANRAKGEFLANMSHELRTPLNAILGYAQILRRD--ASLSAQHRE 300

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  S   LL L+ D LD A V+AG +++  + + L   L+ +++ I  K+ + ++ 
Sbjct: 301 GVGVIQRSGEHLLALIGDALDFARVEAGRLRIEMADVPLAGTLDAIREIIEVKVAQKHVD 360

Query: 669 I--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              +V  D    +  AD +RL Q+   +L NA +F+ +GS  +L      G   F V++ 
Sbjct: 361 FIWRVAPDVP-EAVRADERRLRQVLLNLLVNAFNFTDQGSVSLLIEMSAMGRVCFEVRDT 419

Query: 727 GSSIPEDMCKSVFNRFVSNAH 747
           G  +  D  +++F  F    H
Sbjct: 420 GIGMDPDKLQTIFEPFEQIMH 440


>gi|266622770|ref|ZP_06115705.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288865493|gb|EFC97791.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 1052

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 117/238 (49%), Gaps = 12/238 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  ++A+E K+ F+  +S+++R+P+  I G T++  +        K    ++ I  SS  
Sbjct: 544 EEAKQANEAKSDFLSRMSHDIRTPMNVIAGMTEIAGSHVYEPERVKDC--LQKIRLSSHH 601

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ----SIATKMHENNIRIKVISDG 675
           LL L+ND+LD++ ++ G   +N   + L  +L EV       I  K    ++ +  + D 
Sbjct: 602 LLGLINDVLDMSRIENGNFHINMVPVSLPAVLREVIMITLAGIREKAQIFDVHLVNLEDE 661

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDM 734
           +   F +D  RL QI   +LSNA  F+     ++ +   +D    IF+V + G+ +  + 
Sbjct: 662 Q---FYSDALRLRQILLNLLSNACKFTPVSGRIVFEVEQKDRTALIFTVSDTGAGMSPEF 718

Query: 735 CKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F  F    ++   Q  G GLG+ I +  +++  G +++SS     TT    +P+
Sbjct: 719 LEHIFEAFTREQDSRTDQIEGSGLGMCITKRLVDMMEGTITVSSCPGKGTTFQVTLPA 776


>gi|153874727|ref|ZP_02002839.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152068810|gb|EDN67162.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 250

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 119/237 (50%), Gaps = 21/237 (8%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLK--TSKLGSLNSKQSQYVE---YISASSTILLNL 623
           K+ F+ ++S+ELR+PL  I+G++++L+    ++G     ++ +V     I ++   LL L
Sbjct: 3   KSQFIANMSHELRTPLNAILGYSEILQEDAQEIG-----EADFVTDLVKIHSAGKHLLGL 57

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+LDL+ ++AG M++      L  LL EV  +I   + + +  + +     LG   AD
Sbjct: 58  INDVLDLSKIEAGKMEIYLEHFELQSLLKEVISTIQPLISKRDNILHLEFAENLGKMEAD 117

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFI-----FSVKNNGSSIPEDM 734
           + ++ Q    +LSNA  F++ G          A  +N +F      F V + G  + +  
Sbjct: 118 QTKIRQSLLNLLSNAAKFTNNGIITFFVNRQTANSENSEFKRDWIEFGVSDTGIGMTKTQ 177

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+ F        R+  G GLGL I + FI + GG +++ S  E  +T   R+P
Sbjct: 178 KNKIFHAFSQADASTTRKYGGTGLGLVITKCFIEMMGGTITVESDYEHGSTFKIRLP 234


>gi|152982741|ref|YP_001352306.1| hybrid two-components system response regulator and sensor kinase
           [Janthinobacterium sp. Marseille]
 gi|151282818|gb|ABR91228.1| hybrid two-components system response regulator and sensor kinase
           [Janthinobacterium sp. Marseille]
          Length = 948

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 10/251 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F+++T   +   +L +       A+  K  F+  +S+ELR+PL  ++G  +L     
Sbjct: 444 LCVFMDITAHKQIHESLLKAKLHADDANTAKTLFLTTMSHELRTPLHGLLGALELFS--- 500

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L ++  +Q  Y+  +  SS+ILL  V+  LD+A ++AG  +L  +      LL EV  + 
Sbjct: 501 LTAVTDQQRMYLHAMQQSSSILLKTVSQTLDIARIEAGAFELETTAFSSLALLEEVIAAY 560

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAA 713
           A       + I  + D  +    V D  R+ QI + ++SNA+ F+  G  V    +L   
Sbjct: 561 AAPAERKALCICGVPDPAIPELLVGDVTRIKQILNNLMSNAIKFTDSGQVVLRSRLLNLE 620

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHV 772
                 +  V+++G  I +     +F  F       Q + G GLGLSI   F  + GG +
Sbjct: 621 HGMATIVLQVEDSGRGIDQVHLGRIFEPFYQVEQNAQLKSGTGLGLSICRRFAQMMGGTI 680

Query: 773 -SISSSDEGVT 782
            ++S    G +
Sbjct: 681 WAMSEPGSGTS 691


>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 947

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 17/247 (6%)

Query: 548 SVRAERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           S+  ER  TE+N     +A   A   K+ F+ ++S+ELR+P+T ++G  DL   S     
Sbjct: 545 SIAMERKTTEENLQQAKQAAEAASRTKSQFLANMSHELRTPMTGVLGMLDLALQSP---S 601

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + ++S Y+     S   LL ++NDILDL+ V+AG   L+     L   + E     A + 
Sbjct: 602 DLERSDYIRTAYRSGRSLLQILNDILDLSKVEAGKYSLDLKPFSLKSCVAEAVDIAAPEA 661

Query: 663 HENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GD 718
               I +++     L + VA D+ RL Q+ + ++ NA+ F+ +G   +     D    G+
Sbjct: 662 KRKGIELELDLAQDLPARVAGDQVRLRQVLTNLVGNAVKFTERGRVTVQVEVADKTPEGE 721

Query: 719 FI--FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +  F V + G  IP+D    +F  F  + +++     G GLGL+I +  +   GG +  
Sbjct: 722 SLLRFRVSDTGIGIPQDKRHLLFQAFSQIDDSNTRNYGGTGLGLAISKEIVQRMGGEIGF 781

Query: 775 SSSDEGV 781
            S  EGV
Sbjct: 782 ESG-EGV 787


>gi|150399196|ref|YP_001322963.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150011899|gb|ABR54351.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 613

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 118/243 (48%), Gaps = 6/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAER + E  + L+  D++K   +  VS+ELR+PLT+I G+ +LL+    G L   Q ++
Sbjct: 371 RAER-IEESYDELKDRDKLKTELLSAVSHELRTPLTSIKGYLELLREGAAGKLTETQKEF 429

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E +  +   L   V +I DL  VD+   K+    + + + ++E+  ++    +E N+ +
Sbjct: 430 IEVVYENVNRLRRHVENIKDLVKVDSLENKVKLDGVNIKNAVSEIIDNVKNFANEKNVVL 489

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             + D        DR ++ Q+   ++ NA+ F+   S V +    +  +F   V + G  
Sbjct: 490 --LQDIDNVVIKGDRIKINQVLENLVENAISFTKPYSKVTVGGYTEGENFHLEVTDQGVG 547

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVG---LGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           IP++   ++F  F S +   +   VG    GL   +  I  H G + + S     TTI+ 
Sbjct: 548 IPKEELNNIFKDFYSESFSSKVENVGDPNFGLIACKKIIEAHEGSIWVESRVGKGTTIHV 607

Query: 787 RIP 789
            +P
Sbjct: 608 LLP 610


>gi|311894213|dbj|BAJ26621.1| putative two-component system sensor kinase [Kitasatospora setae
           KM-6054]
          Length = 545

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 31/308 (10%)

Query: 502 AIITS--FDDERKSLQGTLELLSDSV-------LEYSIIPLPNAQTMLTFVNVTDSVRA- 551
           A++T+  F+  R+ +   LE L            E+ I+P   A        + DS+R  
Sbjct: 207 AVLTALVFEGLRRGINRPLERLGADARRIAAGDFEHPIVPTGPADLRRLSAEI-DSMRRR 265

Query: 552 ---ERALTEKNEALR---KADEIKNS------FVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              E A TE+   LR   +A +++ S      F    S++L+ PL  +  FT LL+    
Sbjct: 266 LTRELAFTEQAR-LRLDAQAADLQRSNTELEQFAYVASHDLQEPLRKVSSFTQLLRRRYG 324

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L++K  QY+++    +  +  ++ND+LD + V  G +  N+  + L  +L    ++++
Sbjct: 325 GQLDAKADQYIDFAVDGANRMQVMINDLLDFSRV--GRVHHNHQEVDLEHVLERTLETLS 382

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNG 717
             + E  +R ++  D  L + VAD  ++  ++  ++ NA+ F   G    V + A R+ G
Sbjct: 383 IGIEE--VRGEITHD-SLPTLVADPTQMGMLWQNLIGNAVKFRRPGVPPRVHVSAEREGG 439

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + F+V +NG  IP      VF  F     + +  G G+GL++ +  +  HGG + +  +
Sbjct: 440 LWRFAVTDNGIGIPAQFAVKVFVIFQRLHTKEEYAGSGIGLAMCKKIVEFHGGTIEVDPT 499

Query: 778 DEGVTTIN 785
               T I 
Sbjct: 500 RTDGTRIT 507


>gi|294495286|ref|YP_003541779.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666285|gb|ADE36134.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 510

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 126/250 (50%), Gaps = 7/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  +AE AL E N+ L++ D+++N F+ ++S EL+ PL +I GF++LL   + G +N
Sbjct: 246 DITEKKQAEMALVEANKELQELDKMRNEFLANISKELQMPLASIKGFSNLLARGEYGEIN 305

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY-STIVLNDLLNEVKQSIATKM 662
           SKQ   +  I+ +   L   VN +L  A+ D     + Y     +N LLN+    +    
Sbjct: 306 SKQRDALLTITRNCDRLQKHVN-VLLYASEDCSQNVIYYFEATDINSLLNKTLDELKINF 364

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + N+ +++ + D  +    AD  +L  +  +IL NA+ F+     + +  +R       
Sbjct: 365 AKYNLTLEINLED--IPQVNADETQLKNVIFQILDNAIKFTPANGKIKVSTSRTGKYVEM 422

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            ++++G  I +D  +++F  F  V  + R +  G G+GL I +  +  H G + + S   
Sbjct: 423 KIRDSGIGIAKDKVENIFKSFYQVDGSTRRKYGGTGIGLYICKKIVEGHKGKILVESVKG 482

Query: 780 GVTTINCRIP 789
             +    ++P
Sbjct: 483 KGSEFTVQLP 492


>gi|260102099|ref|ZP_05752336.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
 gi|260084086|gb|EEW68206.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
          Length = 619

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 22/242 (9%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K +  +  FV +VS+ELR+PLT++  + + L     G+    +   +++E     ++ +
Sbjct: 372 QKNENSQRQFVSNVSHELRTPLTSLQAYIEALNE---GAWKDPEIAPKFLEVAQQETSRM 428

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLND----LLNEVKQSIAT---KMHENNIRIKVIS 673
           + ++ND+L L+ +D G+ K++   + LND    +LN     + T   K H+    IK   
Sbjct: 429 IRMINDLLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIK--- 485

Query: 674 DGKLGSFV----ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +LG+       D  +++Q+   I++NA+ +S  G  + ++     G  I S+ + G  
Sbjct: 486 -RELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLG 544

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +F+RF  V  A    + G GLGL+I +  +  H G +   SS+   +T    
Sbjct: 545 IPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYIS 604

Query: 788 IP 789
           +P
Sbjct: 605 LP 606


>gi|225419781|ref|ZP_03762084.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme
           DSM 15981]
 gi|225041585|gb|EEG51831.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme
           DSM 15981]
          Length = 938

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 11/230 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A  EK EA   A   K+ F+  +S+E+R+P+  I+G T+L+       L+ +    +E 
Sbjct: 551 QAELEKAEARSTA---KSDFLSKMSHEIRTPMNAIVGMTELVSMES--GLSPETRDKLEK 605

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +SS  LL+L+NDILD++ +++G + +N     L ++L EV+  I+ +  +  + ++ +
Sbjct: 606 IRSSSRYLLSLINDILDMSRIESGNLSINEEAFSLREILEEVESIISGQAQQRGLALECV 665

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGD---FIFSVKNNG 727
            +        D  RL Q+   +L N++ F+  G  + L  +A    G    + FSV++ G
Sbjct: 666 RNIDCDWLTGDPIRLRQVLLNLLGNSVKFTPTGGLLQLSVQACGMEGQEAVYDFSVRDTG 725

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             I  +  + +F  F     +  +  G GLGL I  + +   GG +++ S
Sbjct: 726 VGISHEDQERIFRPFEQLGGNELKSLGTGLGLPISRNLVRSMGGELTLES 775


>gi|145637393|ref|ZP_01793053.1| GTP cyclohydrolase II [Haemophilus influenzae PittHH]
 gi|229847397|ref|ZP_04467498.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 7P49H1]
 gi|145269485|gb|EDK09428.1| GTP cyclohydrolase II [Haemophilus influenzae PittHH]
 gi|229809723|gb|EEP45448.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 7P49H1]
          Length = 598

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  IAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    +
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKQ 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|20808918|ref|NP_624089.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517579|gb|AAM25693.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 469

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L + ++++  FV +VS+ELRSP+T+I G+ D +    +     K   Y++ +   +  + 
Sbjct: 240 LAQLEDMRKEFVANVSHELRSPITSIQGYIDGILDGTIPK--EKTYDYLKVVQEETRRMS 297

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ND+L++  +++G   LN +   +N+L+         ++ E ++ +KV  +       
Sbjct: 298 RLINDLLEMTKLESGEFPLNRTEFDINELIRICIIKFEKRIVEKDLTVKVDFEEDRRFVF 357

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSI-PEDMCKSVF 739
           ADR ++ Q+ + ++ NA+ FS K   +I       GD +F +VK+NG  I PED+ + ++
Sbjct: 358 ADRDKIEQVLTNLIDNAIKFS-KPKGIIHLFTEVKGDKVFITVKDNGIGISPEDL-EHIW 415

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF        + G GLGL IV+  I  H   +   S  +  T+    +P K+
Sbjct: 416 ERFYKADKSRGKDGAGLGLYIVKKIIEAHKEEIWAESELKKGTSFTFTLPIKK 468


>gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
           2228]
          Length = 1043

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+E+R+P+  I G   L+  +    L+ +Q  Y++ I +S+  L  L+
Sbjct: 313 ANKAKSEFLANMSHEIRTPINAIKGLIYLILDT---PLSMQQKDYLKKIQSSTVSLSRLI 369

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILD + ++A  + L      L+D+L+++    A K ++  +     +D      V D 
Sbjct: 370 NDILDFSKIEAKKLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEFFYDTDHVPQKLVGDS 429

Query: 685 QRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            RL QI   ++SNA+ F+  G       I+K         F VK+ G  + ++  + +F+
Sbjct: 430 LRLGQILLNLVSNAIKFTETGEVRLIVRIIKKTEQKIKLKFIVKDTGIGMTKEEQQKLFS 489

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           +F        R+  G GLGL+I +  +   GG + + S   EG T
Sbjct: 490 QFTQADSSTTRKYGGTGLGLTISQRLVEKMGGEIKVESKPAEGST 534


>gi|196041431|ref|ZP_03108724.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196027679|gb|EDX66293.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 368

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 125/242 (51%), Gaps = 7/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 124 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 183

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G+++LN   I +++LL ++ + +   + ++++  
Sbjct: 184 IAY--TKSQRLESLIDELFEITRMNYGMLQLNKKPIDISELLIQLDEELYPLLEKHHLEA 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DN + +  V N G S
Sbjct: 242 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNEEVVIQVMNYGDS 300

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 301 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTIFEVR 359

Query: 788 IP 789
           +P
Sbjct: 360 LP 361


>gi|24375923|ref|NP_719966.1| response regulator/sensor histidine kinase [Shewanella oneidensis
           MR-1]
 gi|24350905|gb|AAN57410.1|AE015877_1 response regulator/sensor histidine kinase [Shewanella oneidensis
           MR-1]
          Length = 1141

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 10/244 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL    E    A + K  F+  +S+E+R+P+  ++G  + L  + LG    +Q Q V+
Sbjct: 545 ENALAIAKENAELATKRKAEFLAAMSHEIRTPMNGLVGMAEQLSFTPLGI---EQKQMVQ 601

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS  +  +L ++N+ILD + +D G M+L  + I+L ++L+     +   +   ++ + +
Sbjct: 602 IISNGAEEILQIINNILDFSKIDMGKMRLESTPILLREVLDSTLNMVMNDLRTKDLSLYL 661

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDNGDFIF-SVKNN 726
            +  G       D  R+ QI    +SNA+ F+ +G    +V L+A  +    +   V++ 
Sbjct: 662 HVDQGVAARVTGDSLRIKQILFNWVSNAIKFTERGFIEVSVKLEAEEEGQQLLLIGVQDT 721

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +  D    +FN F        R   G GLGL+I  +   + GG + ++S+    T I
Sbjct: 722 GIGMNADTQARIFNIFEQADVSTTRSYGGAGLGLAISHTLAEMMGGDIILNSAPHLGTFI 781

Query: 785 NCRI 788
             RI
Sbjct: 782 GLRI 785


>gi|21243758|ref|NP_643340.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
 gi|21109346|gb|AAM37876.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1191

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 21/241 (8%)

Query: 549  VRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +RA+  L + K E   +A   K  F+  + +E+R+P+T ++G ++LL  + L   + +Q 
Sbjct: 790  MRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL---DGRQQ 846

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +  + +     +  +
Sbjct: 847  GYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQAVELVRPSAEQKQL 906

Query: 668  RIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-----TVILKAARDNGDFIF 721
                 + D    +   D  R+ QI   +L NA+ F+ +GS     T + +  R       
Sbjct: 907  AFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLSQHTRQG--LRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRF------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             V++ G  +  +    +F RF      ++ A  G   G GLGL+I        GG V+++
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHG---GSGLGLAICRELAAAMGGAVTVA 1021

Query: 776  S 776
            S
Sbjct: 1022 S 1022


>gi|53711874|ref|YP_097866.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52214739|dbj|BAD47332.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 479

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 119/217 (54%), Gaps = 4/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++GSLN +Q Q  + I  +S  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPISAIMMSLQLLEDKRVGSLNGEQEQLSKNIRDNSQRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG +++        +L+    ++   +  + NI+I+V     K+   
Sbjct: 311 DITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVDYPQEKIPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   V++   R   ++I   V++ G  I     +S+F
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVVI-GVRHKKEYIELYVQDFGKGIDPRYHQSIF 429

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 430 DRYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVQS 465


>gi|325121839|gb|ADY81362.1| putative two-component sensor kinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 1154

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 135/261 (51%), Gaps = 8/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +       + L +   +  +A++ K+ +V  +S+ELR+PL +I+G++ LL+ 
Sbjct: 652 QTALLIDEIAAHEVTSKDLQDARISAERANDAKSRYVIGISHELRTPLNSILGYSQLLQK 711

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L+ +    +  IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q
Sbjct: 712 QE--QLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 769

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  + N++        L  +V  D++RL QI   +L NA+ F++ G T+ LK    
Sbjct: 770 MFQPQFEQKNLQFVYEIGDNLPHYVRTDKKRLEQILINLLGNALKFTTSG-TITLKVEYR 828

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  I E   + +FN F   SN  +G   G GLGL IV+  ++L GG +S
Sbjct: 829 FQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLS 888

Query: 774 ISSS-DEGVT-TINCRIPSKE 792
           ++S  ++G    I   +PSKE
Sbjct: 889 VTSQLNQGSQFKIKFYLPSKE 909


>gi|313625271|gb|EFR95100.1| sensor protein kinase WalK [Listeria innocua FSL J1-023]
          Length = 274

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 28/240 (11%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILL 621
           K D+ +  FV +VS+ELR+PLT++  + + L     G+   K+   +++E     +  ++
Sbjct: 39  KVDQERRDFVSNVSHELRTPLTSMHSYLEALSD---GAWEDKEIAPRFLEVTQNETERMI 95

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------KQSIATKMH--ENNIRIKV 671
            LVND+L L+ +D G  +L  S +   D  N +        K++I  K H  +  + I++
Sbjct: 96  RLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEI 155

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                      D  +++Q+   I+SNA  +S  G  +     +   +   S+ + G  +P
Sbjct: 156 -----------DEDKVMQVLDNIISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVP 204

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   +VF+RF  V  A   +  G GLGL+I    I  HGG +    +    T I   +P
Sbjct: 205 DEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 264


>gi|269977577|ref|ZP_06184544.1| putative sensory transduction histidine kinase [Mobiluncus mulieris
           28-1]
 gi|269934180|gb|EEZ90747.1| putative sensory transduction histidine kinase [Mobiluncus mulieris
           28-1]
          Length = 271

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 5/233 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E LR+  E        +++E+RSPLT +IG ++LL+    G L+ +Q + V  I  ++ +
Sbjct: 35  EWLRQTHEQYKRNPSILAHEIRSPLTVLIGNSELLQDKTFGELSERQQEMVSRIETNARL 94

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L ++  D L  A +DA + +L   T    D+++ ++Q     +     RIKV    +   
Sbjct: 95  LQDMAEDFLTAARIDAELFELKLQTF---DIVSLIRQITGDLLSVKKARIKVTRRVRSIW 151

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD++ + Q  + +++NA+  +   +++ +         +  + +NG+ + E     +F
Sbjct: 152 VQADKRLIRQALTNLINNAISHAGDDASIEVNPYHGKEGCVIDITDNGAGMTEVERIRIF 211

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +V  +  GQ  G GLG+ I +  INLH G + + S  E  T I   +P+ E
Sbjct: 212 QPYVRGSS-GQ-PGTGLGMMITKKIINLHQGRIQVDSIAERGTRIRVILPALE 262


>gi|83311278|ref|YP_421542.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946119|dbj|BAE50983.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 499

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 8/229 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR   E +N F+  VS+E R PL+ I G   L+     G  +S+ +  V  I  +   + 
Sbjct: 276 LRAMGEQRN-FLSMVSHEFRGPLSTITGAAQLIAI--YGGGHSELADEVAKIHRALGRMS 332

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           NL+N+ L+   +D+    L+ +     DL   V+ + A+ +   N R   +S  + G FV
Sbjct: 333 NLINEYLNEERLDSAASPLDAARF---DLGGMVEDACASGLFSTNDRPLDVST-EPGVFV 388

Query: 682 ADRQRLLQI-FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
                L+ I  S I  NA+ FS   S V +   R +G    +V+++G  IP D  + +F 
Sbjct: 389 FGDSALMSIAVSNIADNALKFSPADSPVTVTLRRRDGFAAVTVRDHGPGIPPDEQERIFE 448

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++  +    +  GVGLGL +V+  ++LHGG ++I S   G T     +P
Sbjct: 449 KYYRSIRTDRVCGVGLGLYLVKRIVDLHGGTIAIDSPPSGGTAFTVSLP 497


>gi|60680102|ref|YP_210246.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|265765240|ref|ZP_06093515.1| FrrD [Bacteroides sp. 2_1_16]
 gi|18033127|gb|AAL56997.1|AF329100_4 FrrD [Bacteroides fragilis]
 gi|60491536|emb|CAH06288.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|263254624|gb|EEZ26058.1| FrrD [Bacteroides sp. 2_1_16]
          Length = 479

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 119/217 (54%), Gaps = 4/217 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D  K +F+  +S+EL++P++ I+    LL+  ++GSLN +Q Q  + I  +S  LL
Sbjct: 251 FKELDSAKTTFISTISHELKTPISAIMMSLQLLEDKRVGSLNGEQEQLSKNIRDNSQRLL 310

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           ++  ++L++  V+AG +++        +L+    ++   +  + NI+I+V     K+   
Sbjct: 311 DITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVDYPQEKIPKL 370

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVF 739
             D +++  + + +LSNA+ +S +   V++   R   ++I   V++ G  I     +S+F
Sbjct: 371 FVDSEKIAWVLTNLLSNAIRYSKENGRVVI-GVRHKKEYIELYVQDFGKGIDPRYHQSIF 429

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +R+       + +G GLGLSI + F+  HGG +++ S
Sbjct: 430 DRYF-RVPGTKVQGSGLGLSISKDFVEAHGGTLTVQS 465


>gi|115360402|ref|YP_777539.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
 gi|115285730|gb|ABI91205.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 528

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +++ELR+ L  +     +L+T  L       +Q  + +      L  LV+D+LD+ 
Sbjct: 161 FIAMLAHELRNHLAPLRHSVSVLQT--LPDPAPMLAQCRDAVHRQVGQLTRLVDDLLDVG 218

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            + AG ++L+ + + + D++    +SI  K+      ++V    +      D  RL+Q+ 
Sbjct: 219 RITAGKVELDNAPVTVRDVVCRGVESIQPKLAARQQHLRVELPPEPVVVRGDAARLVQVL 278

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             +L NA  FS  G+ + + A R+       V ++G  I     +++F+ F  +   G+R
Sbjct: 279 HNLLDNASKFSPPGARIDVSADREGSTVAIRVTDHGVGIAAGSLETIFDLFDQDGVPGRR 338

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
              G GLGL+I  SFI LHGG +S  S   G   T   R+P
Sbjct: 339 PSDGFGLGLAICRSFIELHGGRISAESEGPGHGATFTVRLP 379


>gi|328881239|emb|CCA54478.1| Osmosensitive K+ channel histidine kinase KdpD [Streptomyces
           venezuelae ATCC 10712]
          Length = 398

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASS 617
            EA R+ +      +  V++ELRSPLT++ GFT  L   K    N +Q +  +E + A +
Sbjct: 160 TEARRRTERSHAELIATVAHELRSPLTSVKGFTATL-LGKWERFNDEQKRLMLETVDADA 218

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +  L+ ++LD++ +D+G +++    + +   +    Q + T   ++  R  V    +L
Sbjct: 219 GRIKRLIAELLDISRIDSGRLEVRRQPVDIAAAIGRHVQ-VHTTGGQSPDRFFVRIRPEL 277

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD--FIFSVKNNGSSIPED 733
               AD  ++ QI   +L NA+       T+ +  A+  D+G+     +V + G  IPE+
Sbjct: 278 PPLWADPDKIDQILGNLLENAVRHGEGTVTIEVAPAKTGDDGEEGTEVTVSDEGPGIPEE 337

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
               VF RF   + RG   G GLGL IV+  +  HGG +++     G
Sbjct: 338 SMSRVFTRFWRGSKRG---GTGLGLYIVKGVVEAHGGTITVGRGPRG 381


>gi|298375279|ref|ZP_06985236.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298267779|gb|EFI09435.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 828

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 20/231 (8%)

Query: 562 LRKADEIKNSFVQH-------VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L KA ++  S ++        +S+++R+PL++IIG+ +LL        + +Q  Y+E + 
Sbjct: 323 LEKAKQVAESLLRSREKLMLTISHDIRAPLSSIIGYIELLLRRHP---DERQQYYLENMK 379

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR----IK 670
            SS  +L+LVND+LD   +++G M+++     +  L +E+  S         +R    +K
Sbjct: 380 GSSDHILSLVNDLLDFQRLESGEMEVHSVPFRVPVLFDEIYTSFQPIAEAKGLRFVLNLK 439

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNN 726
               G++  ++ D  R+ Q+   +LSNA+ F+  G  V+L    K +  +     +V ++
Sbjct: 440 PEETGQV--YMGDPIRIRQVVGNLLSNAIKFTEAGRVVLLVSLQKLSAVHYQLSITVSDS 497

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           G  IP++  + +F  F   A   +  G GLGLSI    ++L  G +++ S+
Sbjct: 498 GPGIPKEEQERIFGEFTRLADTEEVEGFGLGLSITRKLLSLMNGTLALDSA 548


>gi|242373792|ref|ZP_04819366.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
 gi|242348529|gb|EES40131.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
          Length = 587

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D++K  F+ +VS+ELR+P++ + G+T+ +    +   +  +      +  S   L  LVN
Sbjct: 356 DQMKKDFIANVSHELRTPISLLQGYTESIVDGVVTEPDEIRDSLAVVLDESKR-LNRLVN 414

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKLGSFVAD 683
           ++L++A +DA  + +      ++DLLN++K     +  + ++ ++  S  D +L  +  D
Sbjct: 415 ELLNVARMDAEGLSVEKEVQPIDDLLNKMKAKYRMQAEDLDLTMEFNSGNDNQLWDY--D 472

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
             R+ Q+ + ++ NA  ++  G T+ +  A+DN   I  + + G+ I  +  + VF+RF 
Sbjct: 473 MDRMDQVLTNLIDNASRYTQPGDTIAVTTAKDNRYNILYISDTGTGIAPEHLQQVFDRFY 532

Query: 743 -VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            V  + +  ++G GLGL I +  I  HGG + + S     TT   ++P
Sbjct: 533 KVDASRKRGKQGTGLGLFICKMIIEEHGGKIEVESELGKGTTFIIKLP 580


>gi|218676135|ref|YP_002394954.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218324403|emb|CAV25798.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 861

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 125/258 (48%), Gaps = 19/258 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  + AER      E       ++  F+  +S+E+R+PL  I+G + LLK S     N
Sbjct: 458 DITKLIEAERQADRAREEAEHLASVRADFLAKMSHEIRTPLNGILGVSQLLKRSIHDEDN 517

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V+ +  S+  LL ++NDILD + ++ G   +     +L +L+N +  SI   + 
Sbjct: 518 RDQ---VDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQKKDFLLGELVNTL-DSIYRPLC 573

Query: 664 ENN-----IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--N 716
           E+      I   +I D K+ +   D+ RL QI   +LSNA+ F+ +GS  +        N
Sbjct: 574 EDKSVEFTIVNHLIDDIKIHT---DQVRLNQIMFNLLSNALKFTHQGSISVSFEIESILN 630

Query: 717 GDF---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            DF   I  VK++G  I E    ++F  FV       R   G GLGL+IV++ +++  G 
Sbjct: 631 TDFASLIVRVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGSGLGLTIVKNLVDMLEGD 690

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S  +  +     IP
Sbjct: 691 IQVRSVKDQGSEFIIEIP 708


>gi|126663362|ref|ZP_01734360.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium
           BAL38]
 gi|126625020|gb|EAZ95710.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium
           BAL38]
          Length = 722

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 126/243 (51%), Gaps = 21/243 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYV 610
           + LT + E   +A + +  F+  VS+ELR+PL  I G T LL  +  K+  LN     Y+
Sbjct: 341 KELTLEKEKAERASKARADFLSTVSHELRTPLNAINGITYLLLQEKPKVSQLN-----YL 395

Query: 611 EYISASSTILLNLVNDILDLATVDAG---IMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  S   LLN +NDIL++  +++    I K+N++   L +L   +  S    ++ENNI
Sbjct: 396 KSLEFSGNYLLNFINDILEINRLESDKVLIEKINFN---LTELSGNITASFKEFINENNI 452

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FS 722
              +  D  +  +   D  +L QI   +L+NA+ FS  G    T+  K+  +N  F+ F 
Sbjct: 453 NFHLNIDNSITYNLKGDPTKLSQILINLLNNAIKFSKDGDVWFTIKKKSETENNVFLYFE 512

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS-SDE 779
           + +NG  IP++   ++F+ F   +    R   G GLGLSIV+  + + G  + + S S +
Sbjct: 513 ISDNGIGIPKEKQDAIFDSFSQGSVEINRTYGGTGLGLSIVKKILEIMGSQIHLKSESGK 572

Query: 780 GVT 782
           G T
Sbjct: 573 GST 575


>gi|330964084|gb|EGH64344.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 1195

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+    E+ L E      +A+E K+ F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 672 WIDITERKLLEQQLEEAVRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEHAL-R 730

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                SQ ++    S+T L+ L+ + LDLA ++AG M+L+     L      V    + +
Sbjct: 731 RGEAPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLVVTPLQTFFEGVLALFSAQ 790

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718
             +  + +++ +++   G +  D  RL Q+   +L NA+ F+ +G+ V+ ++ + D+ D 
Sbjct: 791 ARDKGLELRLELAEQARGDYWLDPLRLRQVVHNVLGNALKFTRQGAVVVKVEVSDDSPDS 850

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                 + ++G  I     + +F  F      + AH G   G GLGLSI    + L  G 
Sbjct: 851 SRVRIGIMDSGVGIEPARQQQIFQPFTQAADDTAAHYG---GSGLGLSITRQLVELMKGD 907

Query: 772 VSISSSDEGVTTINCRIP 789
           +S+ S     T +   +P
Sbjct: 908 ISLHSEPGTGTRVTIDVP 925


>gi|308185492|ref|YP_003929624.1| two-component system sensor protein [Pantoea vagans C9-1]
 gi|308055772|gb|ADO07942.1| two-component system sensor protein [Pantoea vagans C9-1]
          Length = 389

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 122/245 (49%), Gaps = 9/245 (3%)

Query: 549 VRAERALTEKNEALRKAD-EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           VR      +  + L + D E++ S V  +++ELRSPLT  +G    +    L  +   + 
Sbjct: 150 VRFTEDFNQMTQQLARYDRELRTSHVA-MAHELRSPLTAAMGRLQGI----LDGVFPAEP 204

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q +  I    T L  L +++  L+  DAG + LN     L++LL E    +  +  E+ +
Sbjct: 205 QQLAMIMKQLTQLSRLTDELHLLSLADAGQLTLNRERFNLSELLRERSGWLLPQAEESGV 264

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            I V++ G L    AD  RL Q+ + I  NA+ +++ G  +++ A++++     + ++ G
Sbjct: 265 VISVMAPGDL-LLCADTFRLGQVITIICENALRYAADGGALLITASQNDKATTLTFRDYG 323

Query: 728 SSIPEDMCKSVFNRFV-SNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +  D    +F+RF  +++ R +  G  GLGLSI ++ I  HGG +  +   +G   I 
Sbjct: 324 QGVEPDFLPQLFDRFTRADSSRARHSGGSGLGLSIAKAIIEAHGGSLHATLPADGGLLIG 383

Query: 786 CRIPS 790
             +P+
Sbjct: 384 ITLPA 388


>gi|229159652|ref|ZP_04287663.1| hypothetical protein bcere0009_4570 [Bacillus cereus R309803]
 gi|228623803|gb|EEK80618.1| hypothetical protein bcere0009_4570 [Bacillus cereus R309803]
          Length = 396

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A RAL      ++ + E +  FV   S+ELR+PL  I   TD+L  S   ++  K    +
Sbjct: 158 AGRALV----PIQNSWEKQQQFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKVMD-I 212

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA--TKMHENNIR 668
             IS     L  LV+++L LA  D+  ++++  T  L+ LL E+ +         E  + 
Sbjct: 213 STISKECRRLSKLVSNLLLLARSDSNQIEMDKKTFGLDKLLEEIVEPYKEIASYQEKAMI 272

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +KV  D    SF+ DR+R+ Q+   +L NAM ++++G  + +   + +G     VK++G 
Sbjct: 273 LKVERDI---SFMGDRERIHQMMVILLDNAMKYTNEGGHIQIDCTQTSGSIRIQVKDDGI 329

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + ED    +F+RF   +  R +  G GLGLSI    +  H G + + S
Sbjct: 330 GVKEDDIPKLFDRFYQGDKARSKSEGAGLGLSIANWIVEKHYGKILVES 378


>gi|196033154|ref|ZP_03100567.1| sensor histidine kinase [Bacillus cereus W]
 gi|195994583|gb|EDX58538.1| sensor histidine kinase [Bacillus cereus W]
          Length = 368

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 125/242 (51%), Gaps = 7/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 124 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 183

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G+++LN   I +++LL ++ + +   + ++++  
Sbjct: 184 IAY--TKSQRLESLIDELFEITRMNYGMLQLNKKPIDISELLIQLDEELYPLLEKHHLEA 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DN + +  V N G S
Sbjct: 242 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNEEVVVQVMNYGDS 300

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 301 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTIFEVR 359

Query: 788 IP 789
           +P
Sbjct: 360 LP 361


>gi|163793336|ref|ZP_02187311.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           BAL199]
 gi|159181138|gb|EDP65653.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           BAL199]
          Length = 553

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 125/242 (51%), Gaps = 4/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611
           R L    +    A+  K+SF+  +S+ELR+PL  IIGF+ LL  S+ GS   K+++ Y+ 
Sbjct: 306 RRLVLAAQQAEAANTAKSSFMAVMSHELRTPLNAIIGFSQLLVESEDGSPLWKRARGYIA 365

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL++++DILDL+ +++G  +L  + + + + ++ + + +A    ENNI + +
Sbjct: 366 DIERSGQFLLSIISDILDLSRIESGRYELKPAPLDVVEEVHRIARHLAVSFEENNIDLTL 425

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI 730
               +  S  AD + L Q+    LSNA   +   +TV +     + D +   V + G  I
Sbjct: 426 PPASQRASAFADPRALQQVLMNALSNAQKHNPPDTTVTVSVRMPSYDTVQIEVTDTGVGI 485

Query: 731 PEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P D    ++  FV   +++  +  G GLGL+I    +    G + ++S     TTI   +
Sbjct: 486 PTDQLSRIWEPFVQIESSYSRKGGGTGLGLTICHGLVTAMLGTIEVTSEFGSGTTIRITL 545

Query: 789 PS 790
           P+
Sbjct: 546 PT 547


>gi|83310209|ref|YP_420473.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945050|dbj|BAE49914.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 976

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 106/212 (50%), Gaps = 10/212 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  I+G   LL  S    L+  Q  Y E + +S  +LL+++NDILDL+
Sbjct: 466 FLAVMSHEIRTPMNAILGMIRLLLDS---PLDETQRDYAETVLSSGEVLLSILNDILDLS 522

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQI 690
            ++AG ++L      L  +++ +   +  +  E ++ ++  + G + +    D  RL Q+
Sbjct: 523 RIEAGKLELERIAFDLPKVVDSIIHLMTPRAREKSLALRSWTAGGVPARLTGDPTRLRQV 582

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNA 746
              +LSNA+ F+  G   +  +A    D I      VK+ G  I  +    +F  F    
Sbjct: 583 LLNLLSNAIKFTEAGEVSLHLSAEIQPDGIAAIRMEVKDTGIGISPEARSRLFANFAQAD 642

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               RR  G GLGL+I ++ + L  G + + S
Sbjct: 643 ASITRRFGGTGLGLAICQNLVRLMNGEIGVDS 674


>gi|152978536|ref|YP_001344165.1| integral membrane sensor hybrid histidine kinase [Actinobacillus
           succinogenes 130Z]
 gi|150840259|gb|ABR74230.1| integral membrane sensor hybrid histidine kinase [Actinobacillus
           succinogenes 130Z]
          Length = 611

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 124/255 (48%), Gaps = 10/255 (3%)

Query: 526 LEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           L YSII  L +A  ++ F     +V  ER    + +  R   + K   +  +S+ELR+PL
Sbjct: 55  LGYSIIFGLISAPFVIYFF----TVLVERLELSRQDLARLIRD-KTDLMATISHELRTPL 109

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G T +L  +    L  +Q  Y+  I+ S+  L N+ ND++DL  +D+  ++L    
Sbjct: 110 NGIVGLTRILLDT---PLTEEQKNYLNTINVSAVSLGNIFNDVIDLEKIDSRKLELYKKE 166

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
                 +N++         + N+  ++ +   L  F+  D  RL QI   ++SNA+ F+ 
Sbjct: 167 TDFFSFINDINHIAQFLAGQKNLTFELKTSPDLPHFLLIDATRLNQILWNLISNAVKFTE 226

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           KG   +        +F FSV + G  IP      +F  +    ++ +  G G+GLSI ++
Sbjct: 227 KGKVTLNIQRLSPKNFQFSVSDTGLGIPRGELAKIFGMYYQVENKQKAAGSGIGLSISKN 286

Query: 764 FINLHGGHVSISSSD 778
             NL  G++++SS +
Sbjct: 287 IANLMNGNLTVSSEE 301


>gi|317475545|ref|ZP_07934807.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908249|gb|EFV29941.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 594

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 20/253 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSL 602
           N+   +  ER   EK E +    ++K  F   +S+ELR+PLT I+    +L++  K    
Sbjct: 55  NMQAEILMERLDKEKQEEI---SQMKIRFYIDISHELRTPLTLIVAPLQELIERIK---- 107

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL-----NYSTIVLNDLLNEVKQS 657
              + + + YI  ++  LL+LVN ++D    + GI +L     N    VLN  LN    S
Sbjct: 108 GHWEHEKLSYIQRNTNRLLHLVNQLMDYRRAELGIFELRPVYANAYKKVLNCFLNYENLS 167

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                   +I   + ++ +    + D   L  I + +LSNA  ++ KG  + ++  +++ 
Sbjct: 168 -----KRKDIDYNLYTELQDEELLFDETYLDLIVNNLLSNAFKYTEKGECITVRLYKEDN 222

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + +  V + G  IP +  K +F RF   A  G   G G+GLS+V+  + LH GH+++ S 
Sbjct: 223 NLVLQVIDTGVGIPAEKQKKIFERFYQ-AESGH-EGSGIGLSLVQRLVELHHGHITLESK 280

Query: 778 DEGVTTINCRIPS 790
               +T +  IP 
Sbjct: 281 VGEGSTFSIYIPQ 293


>gi|304405489|ref|ZP_07387148.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304345528|gb|EFM11363.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 505

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 120/237 (50%), Gaps = 13/237 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASS 617
           EA R+A E    F+   S+ELR+PLT+I GF ++L     G+ + ++  Y  +  +   S
Sbjct: 273 EAEREAKEHMRRFIADASHELRTPLTSIHGFLEVLLR---GAADKREQLYPALNSMHGES 329

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           T +  LV D+L LA +D    +L  S I+L++L+ E+   +     E  ++ ++    + 
Sbjct: 330 TRMKKLVEDLLMLAKMDRAP-QLRMSPILLDELMEEMDPHLRMLAGERTVQFEL---QQA 385

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMC 735
            S   D  ++ Q+   +  NA+  +   S +I     D   G  I S+ +NG  I  +  
Sbjct: 386 VSANGDADQIKQVVLNLFHNAVQHTDAHSGIIQVTVSDRPAGQPIVSITDNGPGIAAEHV 445

Query: 736 KSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             VF RF  S++ R ++  G GLGLSI +S +  HGG +++ S     +T   ++P+
Sbjct: 446 PHVFERFYRSDSSRTRKHGGAGLGLSISQSIVKAHGGEITVDSVIGRGSTFAFKLPA 502


>gi|224535913|ref|ZP_03676452.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522473|gb|EEF91578.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1344

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 18/243 (7%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            ER   EK E +    ++K  F  ++S+ELR+PLT I+     L +   G    +Q   + 
Sbjct: 815  ERLDKEKQEEI---SQMKIRFYVNISHELRTPLTLIVAPLQELLSRISGHWEHEQ---LL 868

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKL-----NYSTIVLNDLLNEVKQSIATKMHENN 666
            YI  ++  LL+LVN ++D    + GI +L     N    VLN  +N   +S++ K    +
Sbjct: 869  YIQRNTNRLLHLVNQLMDYRRAELGIFELRLVSANAYKRVLNSFMN--YESLSKK---KD 923

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            I     ++ +    + D   L  I + +LSNA  ++ +G ++ +K  ++ GD +  V + 
Sbjct: 924  IDYNFYTELQDKELLFDENYLDLIVNNLLSNAFKYTEEGESITVKLYQEAGDLVLQVTDT 983

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            G  IP++  + +F RF        R G G+GLS+V+  + LH G + + S     +T + 
Sbjct: 984  GIGIPKEKQEKIFERFYQ--VESGREGSGIGLSLVQRLVELHHGRIELESEPGKGSTFSI 1041

Query: 787  RIP 789
             +P
Sbjct: 1042 YLP 1044


>gi|159037875|ref|YP_001537128.1| histidine kinase [Salinispora arenicola CNS-205]
 gi|157916710|gb|ABV98137.1| histidine kinase [Salinispora arenicola CNS-205]
          Length = 477

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 15/226 (6%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
             FV   S+ELR+PL  I G+ ++ +  +   +    +  +  + + ST +  LV D+L 
Sbjct: 255 RQFVADASHELRTPLAAIRGYAEVARRGR-DRVPPDVAHALRRVESESTRMTGLVEDLLL 313

Query: 630 LATVDAG----IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           LA +D+G    +  ++ S +V++ + +     +A   H   + +     G  G    D  
Sbjct: 314 LARLDSGRPLAVQPVDLSALVVDAVSD---AHVAGPEHRWQLDLPEQQIGVPG----DPA 366

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-S 744
           RL Q+ + +L+NA   +  G+TV    A +    +  V ++G  IPED+   VF RF   
Sbjct: 367 RLHQVVANLLANARVHTPAGTTVTTSLAVEPDAAVLRVADDGPGIPEDLQPEVFERFARG 426

Query: 745 NAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ R +  G  GLGL+IV + ++ H G VS+ S   G T    R+P
Sbjct: 427 DSSRSRSHGSTGLGLAIVAAVVDAHHGVVSVQSR-PGRTVFTVRLP 471


>gi|167647731|ref|YP_001685394.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167350161|gb|ABZ72896.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 710

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 12/242 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+ +R    +     A   A+  K+ F+ ++S+E+R+PL  +IG    L  +    L 
Sbjct: 296 DVTERLREAAEMEAAKTAAEAANRAKSDFLANMSHEIRTPLNGVIGVVAALGQT---GLT 352

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q + V+ I +S   L  LV+DILD++ ++AG + +      L   L  +      +  
Sbjct: 353 PAQREMVDLIQSSGETLERLVSDILDVSKIEAGHLAIEEREFDLEAELGGLLDIARLRAE 412

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDN 716
           E  +  +V       G F+ D  R+ Q+   +LSNAM F+ +G  V         A    
Sbjct: 413 EKGLTFRVEGGASARGVFLGDSIRIRQVLGNLLSNAMKFTGQGEIVARIEVADPPAGEQA 472

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                 V++ G     D+   +F RF        RR  G GLGLSI ++ + + GG +S 
Sbjct: 473 SRLTLEVQDTGVGFDPDLATMLFQRFSQADTTITRRFGGTGLGLSISKTLVEMMGGQISA 532

Query: 775 SS 776
            S
Sbjct: 533 QS 534


>gi|87307297|ref|ZP_01089442.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87290037|gb|EAQ81926.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 1138

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 169/374 (45%), Gaps = 32/374 (8%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           I   S GV +   DG+I+  N  F  +  ++ EE   + G   R++       Y  +   
Sbjct: 611 IRRTSNGVIITDIDGKIEWINDGFTRISGYQLEE---ALGKSPRDL------LYGPNSNL 661

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTMLT-FV----NVTDSV 549
           D  A +  +F  +  +    +    D    V+   I PL +    LT F+    ++T+  
Sbjct: 662 DAIARLEDAFRLQAPTNSEIVNYAKDGREYVVATEIAPLLDTSGTLTGFMMIENDITEKC 721

Query: 550 RAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            AE  L   N  L        +A +IK+ F+ ++S+E+R+P+T I+GF+DLL    +   
Sbjct: 722 AAEARLKAVNAELMLAHQDAERASKIKSEFLANMSHEIRTPMTAIVGFSDLLLEQGMSEE 781

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++S  V  I  +   LL L+NDILDL+ V++G   +    +   +++ +V + +  + 
Sbjct: 782 EKRKS--VGTIQRNGNHLLELINDILDLSKVESGKFDIELRDMDPTEVIRDVHELLNERA 839

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
                R+++   G L   + +D  RL Q    ++ NA+ F+  G   VI +    +   I
Sbjct: 840 ITQENRLQIELKGALPQTIHSDSTRLKQALFNLVGNAIKFTQNGVVKVIAECDFAHEQMI 899

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F V ++G  +  +  + +F  F        R+  G GLGL+I +    L GG V + S  
Sbjct: 900 FQVIDSGIGMSPEQLEQIFQPFRQADASTTRKFGGTGLGLTITKQIAELLGGDVRVESQS 959

Query: 779 EGVTTINCRIPSKE 792
              ++   R+ + +
Sbjct: 960 GVGSSFTLRVATGD 973


>gi|294619270|ref|ZP_06698742.1| sensor protein VanS [Enterococcus faecium E1679]
 gi|291594490|gb|EFF25895.1| sensor protein VanS [Enterococcus faecium E1679]
          Length = 298

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 143/283 (50%), Gaps = 26/283 (9%)

Query: 523 DSVLEYS-------IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           D VLE S       I PL  ++ +  F    + +R E  L++     ++A++ KN  + +
Sbjct: 24  DEVLEASRKLYQNQIEPLKLSEDLQEFEWELNQIRQEVVLSQPQA--KEAEQRKNDLIVY 81

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS---STILLNLVNDILDLAT 632
           ++++L++PLT++IG+  LL+  +   ++S+  ++  Y+S S   +  L  L+N+  ++A 
Sbjct: 82  LAHDLKTPLTSVIGYLTLLRDEQ--EISSELRKH--YLSISLDKAERLEELINEFFEIAR 137

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            +   ++L  + + L  +L ++       +    + ++   +  L S   D  ++ ++F 
Sbjct: 138 FNLSNIELMPTKVHLKMMLEQLSYEFLPLLSSKQLTLESELEADL-SIRFDVDKMQRVFD 196

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
            +L NA+++S +G+ + L A  D        IFS  N G +IP +    +F +F  +  A
Sbjct: 197 NLLQNAINYSYEGAVIKLSAKTDQDKKRVKIIFS--NQGPTIPPEKLSRIFEQFFRLDTA 254

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  R G GLGL+I +  I LH G ++  S DE  T+    +P
Sbjct: 255 RQTNRGGAGLGLAIAKQIIELHAGQLTAQSKDEE-TSFTIDLP 296


>gi|291537898|emb|CBL11009.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 478

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L   +E +  FV +VS++ RSPLT+I G+ + +    +      Q +Y+  I   +  L 
Sbjct: 242 LNTLEEDQRKFVSNVSHDFRSPLTSIKGYVEAMLDGTIPV--EMQDKYLNIILFETERLN 299

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L   +L+L    +  + L+ ++  +N  +    Q+      E +I   +I  G+     
Sbjct: 300 KLTKSLLELNKFGSHGVMLDITSFDINHTIRMTVQTFEGTCMEKHISFNLILSGETLFVS 359

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  ++ Q+   ++ NA+ FS   S + ++    N     SVK+ G  IP+D  K +++R
Sbjct: 360 ADFSKIQQVLYNLIDNALKFSLANSAITIETTEKNEKVFVSVKDTGIGIPKDSIKKIWDR 419

Query: 742 FV-SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           F  ++  RG+ ++G GLGLSIV+  I  HG +++  S+ EGV T
Sbjct: 420 FYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENINCIST-EGVGT 462


>gi|195970207|ref|NP_384498.2| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|187904136|emb|CAC41829.2| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
          Length = 696

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 22/231 (9%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+  +  VS+E+R+PL+ I+G + LL  ++   L+ +Q  Y+  +  S   L+ LV D++
Sbjct: 181 KSRLLATVSHEIRTPLSGILGMSRLLAETR---LSEEQKNYLAGMQQSGHTLVQLVEDLI 237

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA------ 682
           D +++  G  +L  S   L   +  V + ++ + HE NI I        G+ VA      
Sbjct: 238 DFSSLAVGRFQLRPSQEDLRQTVENVVEMLSPRAHEKNIEI--------GATVAIEVPER 289

Query: 683 ---DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  RL Q+   ++ NA+ F+ KG  V +    +NG     + ++G  +  D    VF
Sbjct: 290 MLFDAARLRQVLFNVVGNAVKFTEKGG-VFVSVDIENGSVRIRIDDSGPGMSADELARVF 348

Query: 740 NRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F       QR +G GLGL+I    +   GG ++ +S     +    R P
Sbjct: 349 EEFEQAGDDAQRAKGTGLGLAISRRIMEAFGGSLTATSMSGKGSRFEIRFP 399


>gi|115375537|ref|ZP_01462796.1| SocD [Stigmatella aurantiaca DW4/3-1]
 gi|115367492|gb|EAU66468.1| SocD [Stigmatella aurantiaca DW4/3-1]
          Length = 546

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 7/235 (2%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           R+A   +   +  VS++L++PL  + +G   LL+       +    ++   I  +S   L
Sbjct: 308 RRATRAREDLLAVVSHDLKNPLGVVQLGAALLLRERPNVPRDEHVHKHATRIRDASDRAL 367

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++D+LD   ++ G + L    +  + L+ E   SI      + +++ V     L   V
Sbjct: 368 RLISDLLDWGRLEEGRLPLETREVDASALVLEAVDSIRPLAEAHGLQVVVELPEGLPRVV 427

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R+LQ+   +L NA+ F+  G  V + A     +    V++ G  IP +    VF+R
Sbjct: 428 CDRGRVLQVLGNLLGNAVKFTDPGGRVTVGARTQGDEARLYVRDTGKGIPPEQLSYVFDR 487

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT---TINCRIPSKE 792
           +   A     RG GLGL+I +  +  HGG +   S+  EG T   T++  +PS E
Sbjct: 488 YW-QAKDSVSRGTGLGLAIAKGLVEAHGGRIEAQSTLGEGSTFSFTLHA-VPSHE 540


>gi|17232702|ref|NP_489250.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134349|dbj|BAB76909.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1558

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 17/262 (6%)

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLL 594
            MLT         A   L E  +  R   E    IK+ F+  +S+ELR+PL  I+G+  LL
Sbjct: 1152 MLTLGQQCAQAIARSQLYEAEKNARAIAESTNRIKDEFLAVLSHELRTPLNPIMGWAKLL 1211

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            +T        KQ   +E I  ++ +   L++D+LD++ +  G + LN   + L DL N V
Sbjct: 1212 RTRTYKEETIKQG--LETIERNAKLQTQLIDDLLDVSRILRGKLNLN---VCLVDLRNTV 1266

Query: 655  KQSIAT---KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +  + T        +I I  I   +    + D  RL Q+   ++SNA+ F+     V ++
Sbjct: 1267 QAGLETVRLAAEAKSIEIHTILSDEPVQVMGDGDRLQQVIWNLVSNAVKFTPSEGRVDVR 1326

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
              +   D    V + G  I  +    VF  F     +  R   G+GLGL+IV   + LHG
Sbjct: 1327 LEQVGRDAQIQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGGLGLGLAIVHHLVELHG 1386

Query: 770  GHVSISSS--DEGVTTINCRIP 789
            G V   S+  D+G  T   ++P
Sbjct: 1387 GTVVAESAGEDQG-ATFTVKLP 1407


>gi|119774122|ref|YP_926862.1| sensor histidine kinase/response regulator TorS [Shewanella
           amazonensis SB2B]
 gi|119766622|gb|ABL99192.1| Hpt sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 973

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 107/213 (50%), Gaps = 3/213 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    EA   A + K+ F+  +S+E+R+PL  ++G  +LL   K  SL   Q Q +    
Sbjct: 452 LASAREAAENASQAKSRFLATMSHEIRTPLNGLMGTLELLDKDK--SLTESQHQLLGLSR 509

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+ +L  L++DILD + ++ G +K   + +    LL+EV   +        + +++++ 
Sbjct: 510 YSAVLLQTLLSDILDFSRLEKGQLKAQPAPVDFPQLLDEVMNVMLAGASLAGLGLELLTT 569

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   D  +L Q+   +L NA+ F+ +GS V+L+ + +     FSV + G  + E  
Sbjct: 570 NVPQYVSLDGPKLRQVLLNLLGNAIKFTQRGS-VVLRVSAEGQRLHFSVTDTGVGMDEAT 628

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            + +F  + +   +G+ RG GLGL+I    + L
Sbjct: 629 RQRLFTPYETGHVQGRARGTGLGLAISRELVCL 661


>gi|260582439|ref|ZP_05850231.1| signal transduction histidine kinase [Haemophilus influenzae NT127]
 gi|260094590|gb|EEW78486.1| signal transduction histidine kinase [Haemophilus influenzae NT127]
          Length = 598

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  IAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    +
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKQ 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|170756242|ref|YP_001782973.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169121454|gb|ACA45290.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 448

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +    +++  E +  F+ ++S++LR+PLT+I+GF +LLK  K  +   ++  Y+  I
Sbjct: 215 ALNDMGGKIKENKENEKEFLLNISHDLRTPLTSILGFLNLLKQKKYDTEEDREG-YINTI 273

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L  L+++    +T+    +KLN   I L ++L ++      ++ EN I + +  
Sbjct: 274 EEQSLYLKTLIDEFFQFSTLKWKNVKLNKENINLQEILRQINDGFYPQLKENKISMSMNF 333

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG-SSIPE 732
             K      D  + +++   ++SNA+ +S KG+ + L    +    +    N    ++ E
Sbjct: 334 PEKPLYKEVDVDKFMRVLENVISNAIKYSHKGTEISLNLYENKDKIVMEFWNTPIEALKE 393

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           D    +F RF         +G GLGLSI    + LHGG +     +E +  I
Sbjct: 394 DELDFLFKRFYKKDLSRGNKGAGLGLSIALEAVKLHGGELYAVMKNERLGII 445


>gi|86156934|ref|YP_463719.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773445|gb|ABC80282.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 383

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 10/238 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEY 612
           L E  EA+R  D+    F+   S+ELR+PLT +   T  L  +T +  ++  +Q + +E 
Sbjct: 148 LAEAREAVRSRDD----FLAVASHELRTPLTCVQLVTQSLARQTHEGQAVTGQQVERLEQ 203

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L  LV+ +LDLA +  G ++L  +   L +L++EV       +      + V 
Sbjct: 204 LQRHVARLGELVSGLLDLAEMSRGALQLEPAPFDLAELVHEVAARFEPDVRRRGTALSVH 263

Query: 673 SDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           + G + G +  DR+R+    + +L NA+ +  + S + + A+RD+   +  +++ G  I 
Sbjct: 264 APGPIPGRW--DRRRVGDAIAAVLGNAVKYGGR-SPIEVTASRDDRRAVVVIEDRGPGIA 320

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    VF RF   A      G+G+GL      +N HGG +++ S+       + R+P
Sbjct: 321 LEDQSRVFERFERAAPVAHYPGLGVGLWTARQILNAHGGDIAVESAAGKGARFSLRLP 378


>gi|150389765|ref|YP_001319814.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149949627|gb|ABR48155.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 424

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 125/257 (48%), Gaps = 8/257 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  ML  +       A +++    EA  K    +  F+   S+EL++PLT I    D+L 
Sbjct: 171 AFIMLIVIFFISRFFANKSIKPIEEAFDK----QKQFIADASHELKTPLTIIHTNIDVLL 226

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           +S    +N   S+++ YI + +  +  L+ND+L L  VD   +K+  ++  L+D +  + 
Sbjct: 227 SSGEDQVNGP-SKWLYYIKSETERMTKLINDLLYLTQVDYSDVKMIVTSFNLSDAVENII 285

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            ++   ++ENN+ +  + +  L S +  R+++ Q+   +L NA+ ++     + +   + 
Sbjct: 286 LTMDAVIYENNLSLDYMVEPNLIS-LGSREQIQQVVMILLDNAVKYTDSKGIITISLKKY 344

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           +   + SV N    I ++    +F+RF        R+  G GLGL+I ++ I  HGG + 
Sbjct: 345 HSSLVLSVTNTSEGITQEHIDRIFHRFYRIDQSRARKSGGYGLGLAIAKTIIQQHGGKIY 404

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     TT    +PS
Sbjct: 405 VKSILNESTTFTVELPS 421


>gi|30264914|ref|NP_847291.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47778363|ref|YP_022719.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187735|ref|YP_030988.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49478655|ref|YP_038894.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65322217|ref|ZP_00395176.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|167633958|ref|ZP_02392281.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167638140|ref|ZP_02396418.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170685619|ref|ZP_02876842.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170705368|ref|ZP_02895832.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177651286|ref|ZP_02934117.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190567302|ref|ZP_03020217.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227817645|ref|YP_002817654.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229600811|ref|YP_002869119.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254687656|ref|ZP_05151512.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254736962|ref|ZP_05194668.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741996|ref|ZP_05199683.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254754405|ref|ZP_05206440.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254757237|ref|ZP_05209264.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30259589|gb|AAP28777.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47552068|gb|AAT35453.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181662|gb|AAT57038.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49330211|gb|AAT60857.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|167513957|gb|EDR89325.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167530759|gb|EDR93461.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129493|gb|EDS98356.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170670083|gb|EDT20823.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172083112|gb|EDT68174.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190561806|gb|EDV15776.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227006466|gb|ACP16209.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229265219|gb|ACQ46856.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 368

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 125/242 (51%), Gaps = 7/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
           A   L E  E    A+  K+  V +++++LR+PLT+++G+ DL LK   L     K    
Sbjct: 124 ASEKLKEAVERGDFAESSKDQLVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFST 183

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + Y    S  L +L++++ ++  ++ G+++LN   I +++LL ++ + +   + ++++  
Sbjct: 184 IAY--TKSQRLESLIDELFEITRMNYGMLQLNKKPIDISELLIQLDEELYPLLEKHHLEA 241

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D  L     D + L ++F  +L+NA+ +   G  V L    DN + +  V N G S
Sbjct: 242 RLNVDPHL-PINGDGKLLARVFENLLTNAVRYGYDGQFVDLNGYIDNEEVVVQVMNYGDS 300

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F+ F +   +    R G GLGL I ++ +  H G +S + S+   T    R
Sbjct: 301 IPEEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTIS-AESNVVRTIFEVR 359

Query: 788 IP 789
           +P
Sbjct: 360 LP 361


>gi|239997165|ref|ZP_04717689.1| putative two-component member protein [Alteromonas macleodii ATCC
           27126]
          Length = 1033

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 115/220 (52%), Gaps = 11/220 (5%)

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
           ++S+E+R+P+  IIGF+DL+    LG +L  +Q  ++  I+ S+  LL+L+NDILD A +
Sbjct: 491 NMSHEIRTPMNAIIGFSDLM----LGEALREEQKSHLTTINRSARSLLHLLNDILDSAKL 546

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFS 692
           D G + L+Y   ++ + L+ V  +   +     + + + + D     +    +R+ Q+ +
Sbjct: 547 DKGKLDLDYRDFLIREELDLVISTFWLEAKRKKVGLVLNVDDSVANGYRGVPERMRQVLN 606

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            ++ NA+ F+ +G  V +    D     F V + G  + ++  + VF+ F S A     R
Sbjct: 607 NLIGNAVKFTHEGE-VTINVKSDEKYVYFDVTDTGIGMTQEQVERVFDPF-SQADASMSR 664

Query: 753 ---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              G GLG +I +  + L GG++  +S     TT   R+P
Sbjct: 665 KYGGTGLGTTISKQLVELMGGNICATSEKGKGTTFTFRLP 704


>gi|117168610|gb|ABK32275.1| Amb7 [Sorangium cellulosum]
          Length = 2087

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 123/256 (48%), Gaps = 16/256 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +A +AL EK   L    + K+ F+ ++S+ELR+PL +++  +D L  +   +L  +Q ++
Sbjct: 1386 QARQALEEKARQLAITSKYKSEFLANMSHELRTPLNSLLILSDQLSKNNDRNLTGRQVEF 1445

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I +S   LL L+NDILDL+ +++G + ++   +  +DL + V+++         +  
Sbjct: 1446 AKTIHSSGNDLLALINDILDLSKIESGTVIVDVGELSFSDLQDYVERTFRHVAESKKLEF 1505

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-------------LKAARD 715
            ++     L   +  D +R+ Q+   +LSN+  F+ +GS  +                +R 
Sbjct: 1506 ELNFAQNLPQVIYTDAKRVQQVLKNLLSNSFKFTERGSVALDVDLVTSGWAPENEGLSRA 1565

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                  SV++ G  IP D  + +F  F        R+  G GLGL+I      + GG + 
Sbjct: 1566 GAAIAMSVRDTGIGIPHDKQQIIFEAFQQADGSTSRKYGGTGLGLAISREIAWMLGGEIK 1625

Query: 774  ISSSDEGVTTINCRIP 789
            +SS     ++    +P
Sbjct: 1626 LSSKPGSGSSFTLYLP 1641


>gi|88797749|ref|ZP_01113337.1| PAS [Reinekea sp. MED297]
 gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297]
          Length = 1593

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            ++T+   +E  L         + E K++F+ + S+E+R+PL  IIG + LL      +L 
Sbjct: 830  DITERKNSEEKLQHAITQAMSSAEAKSAFLANTSHEIRTPLNAIIGLSHLLDHE---NLT 886

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q   V+ I  S   LLN++ND+LDL+ ++A  + +  + + L +L+ +       +  
Sbjct: 887  ENQHLLVDKIQLSGQSLLNIINDVLDLSKIEANEVDIESTPVNLRELIEDTLNVHRMQAD 946

Query: 664  ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDF 719
               + + +  D K+ ++V  D+ RL QI   + SNA+ F+S+GS  +   L    D    
Sbjct: 947  LKGLEVALNIDPKVPNWVETDKTRLKQILDNLFSNALKFTSEGSISLRCHLVEETDRATV 1006

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             F V + G  I E   + +F  F        R+  G GLGLSI+   + L  G + +  S
Sbjct: 1007 RFEVIDTGIGISEKAQQQLFEPFTQADVSTTRKYGGTGLGLSIILKLVYLMEGRLGL-ES 1065

Query: 778  DEG 780
            +EG
Sbjct: 1066 EEG 1068


>gi|299782693|gb|ADJ40691.1| Sensor protein [Lactobacillus fermentum CECT 5716]
          Length = 619

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 118/239 (49%), Gaps = 16/239 (6%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K +  +  FV +VS+ELR+PLT++  + + L     G++N  +   +++  +S  +  +
Sbjct: 371 QKEERERKEFVSNVSHELRTPLTSVKSYVEALSD---GAINDPELAPRFLGVVSDETERM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--------KQSIATKMHENNIRIKVI 672
           + ++ND+L L+ +D+G  KLN   + +N+L N +        K   A    +    ++  
Sbjct: 428 IRMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSKKKYTIVRYF 487

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L   + D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP 
Sbjct: 488 TKKDLWVEI-DTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPR 546

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F+RF  V  A   ++ G GLGL+I +  +NL GG + + S +   +T    +P
Sbjct: 547 KDLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|283853366|ref|ZP_06370613.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571234|gb|EFC19247.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 963

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 126/276 (45%), Gaps = 21/276 (7%)

Query: 518 LELLSDSVLEYSIIPLPNAQT----MLTFVNVT-DSVRAERALTEKNEALRKADEIKNSF 572
           LEL     LE    P+   +     +L++++VT D  R       KN A   A + K  F
Sbjct: 378 LELGDGRFLERRSGPIIQGEAYIGRVLSYIDVTADKEREASTERAKNRA-EDASKAKGDF 436

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+PL  +IG T+ +        + +Q  ++  +  S+  LL +VNDILD + 
Sbjct: 437 LAVMSHEIRTPLNVVIGLTEEMLAR---PASEEQLGHLRTVRESAAHLLGVVNDILDFSK 493

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIF 691
           ++AG + L      +  L+  V ++   +     +R +  ++DG  G+   D  RL Q+F
Sbjct: 494 IEAGKLVLERLDFDVRRLVAGVAEAFDREARRKGLRFEARVADGLPGTLCGDPGRLRQVF 553

Query: 692 SKILSNAMDFSSKGSTVI-------LKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRF 742
             ++ NA+ F+  GS  +          A  +G       V + G  I  D    +F+ F
Sbjct: 554 LNLVGNAVKFTEAGSVSLSVGPAQAAPGAVPDGRIGIEVCVADTGIGIEPDRLPEIFDHF 613

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                   RR  G GLGL+I +  +   GG +++ S
Sbjct: 614 QQGGGSIGRRFGGTGLGLAISKGIVERMGGRITVES 649


>gi|149280509|ref|ZP_01886627.1| signal transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149228753|gb|EDM34154.1| signal transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 711

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 119/229 (51%), Gaps = 11/229 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F   +S+E+R+PL  IIG ++ LK++    LN  Q    + +  SS++LL+ VN++L
Sbjct: 339 KSRFFTSISHEMRTPLNAIIGVSEQLKST---PLNDDQRAMSKLLDNSSSMLLSAVNEVL 395

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRL 687
           D + ++ G + L  +      +L E++ +      +  + ++++  D        D  RL
Sbjct: 396 DFSRLETGKLSLAKTPFKYKRVLRELRDTAKVLADQKKLTLELLDEDAPDLLLYGDPYRL 455

Query: 688 LQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF- 742
            QI   +++NA+ F+ KG  +V +   R++ +    + SV + G  I  +   ++FN F 
Sbjct: 456 KQIVMNLIANAIKFTDKGKVSVAVNVKRNDHEQAILLISVTDTGIGIAAENLPTIFNEFS 515

Query: 743 -VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            V N+ R   ++G GLGL I +  + LH G++ + S+    T  +  +P
Sbjct: 516 QVINSKRIDWQKGSGLGLPISKKLVELHKGNIHVESTLNKGTAFHIELP 564


>gi|78486407|ref|YP_392332.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
 gi|78364693|gb|ABB42658.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
          Length = 948

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L E+NEA  KA + K+ F+  +S+ELR+PL  ++GF  LL   +  +L + Q   + 
Sbjct: 562 EEILKERNEA-EKASQAKSQFLSSMSHELRTPLNAVLGFAQLLDMDE--NLTADQKDNIY 618

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +   LL+L+ND+LDLA +++G + L+   + L ++L E +  +        I + +
Sbjct: 619 EIVKAGNHLLDLINDVLDLAKIESGNVDLSIEPVGLKEVLEECRNLMLPVAENKGISLDI 678

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSI 730
            +   L    ADR RL QI   +LSNA+ ++     V ++  + + + +  SVK++G  +
Sbjct: 679 PALNDL-YVRADRVRLKQILLNLLSNAVKYNDDHGRVWVECGQQSENTLRISVKDSGLGV 737

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           PE+    +F  F       G   G G+GLSI ++ I L GG +
Sbjct: 738 PENKQSELFQPFNRLGQEGGGIEGTGVGLSITKTLIELMGGEI 780


>gi|99081695|ref|YP_613849.1| GAF sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99037975|gb|ABF64587.1| GAF sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 579

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 123/245 (50%), Gaps = 12/245 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQ 608
           AE   T K EA     E + +++ H+S+E+R+PL  IIG  DLL  + S++     +Q+ 
Sbjct: 173 AEAERTAKREA-----EARKTYLAHMSHEIRTPLNGIIGSVDLLLREASRVNLDPREQND 227

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I+ S+  L +L+ND LD+A +DAG ++L  +   L++ +++V +  + +  E  + 
Sbjct: 228 LLRTINRSARNLQHLLNDALDIAKIDAGKLELAPAAFDLHETVDDVMKLFSAQACEKGVE 287

Query: 669 IKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +     G         DR RL QI   +LSNA+ F+  GS V L+          +++++
Sbjct: 288 LNHSFRGIEAQEQRYGDRFRLAQILGNLLSNAIKFTDDGS-VSLQINGTPDALHLTLRDS 346

Query: 727 GSSIPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  +  ++A   Q + G GLGL+IV   + L  G +   S     T  
Sbjct: 347 GCGIAPDRLDKLFLPYTQASADVAQTKGGTGLGLTIVHQMVELMQGRIRAESVPGRGTVF 406

Query: 785 NCRIP 789
           +  +P
Sbjct: 407 HLYLP 411


>gi|304406484|ref|ZP_07388140.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344542|gb|EFM10380.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 1088

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 139/286 (48%), Gaps = 39/286 (13%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           LLS  VL ++ +     Q++L  +  + + R    L+E+   L   D++K+ F+   S+E
Sbjct: 392 LLSTGVLLFAFL-----QSLLLSMKFSKAFRQVEQLSER---LLSLDKLKDEFLARTSHE 443

Query: 580 LRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           LR+PL  IIG T+ L     GS L+++++ +++ I +S   L +LVNDILD +       
Sbjct: 444 LRTPLHGIIGLTESLLDGPAGSRLSAEENGHLQLIRSSGQRLAHLVNDILDFS------- 496

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV----------ADRQRLL 688
           KL    I L+ +   V Q +   +H     ++ +++GK    +          AD  RL 
Sbjct: 497 KLRNREIQLHPVTINVHQIVELVLH----LLRPLAEGKGLLLINEVPPALQVRADENRLH 552

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-----V 743
           Q+   ++ NA  F+ +G  VI  A +       ++K+ G  I ++    +F  F      
Sbjct: 553 QMLHNLVGNATKFTLQGHVVI-SARKQARQITINIKDTGIGIAQESLGVIFESFEQLDPT 611

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +N+  G   G G+GLSI +  + LHGG +   S+    ++ +  +P
Sbjct: 612 TNSRFG---GTGIGLSITKKLVELHGGRIWAESTPGLGSSFSFTLP 654


>gi|239995946|ref|ZP_04716470.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 932

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 9/230 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL    + L+KA + K+ F+  +S+E+R+PL  IIG T   K S+  + +  Q   +  
Sbjct: 403 KALDALTQDLQKATKAKSDFLARMSHEIRTPLNAIIGLT---KLSQRAAEDKDQQTNLIQ 459

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671
           I  +S  LL+++NDILD + ++AG + +  +   L+ L+N+  +    +  E +I  I+ 
Sbjct: 460 IEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLGRAEEKHIELIQH 519

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGS 728
           IS     + + D  R+ QI S ++SNA+ F+  G   +      N + I   F VK+ G 
Sbjct: 520 ISRDVPLNLIGDPLRIQQILSNLVSNALKFTEDGLISVSVRCTHNVEDIQLEFEVKDTGI 579

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +       +F  F        RR  G GLGL+I +  + L GG + + S
Sbjct: 580 GLNSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMGGEIWVES 629


>gi|217958236|ref|YP_002336782.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|229137450|ref|ZP_04266061.1| hypothetical protein bcere0013_5820 [Bacillus cereus BDRD-ST26]
 gi|217065748|gb|ACJ79998.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|228646008|gb|EEL02231.1| hypothetical protein bcere0013_5820 [Bacillus cereus BDRD-ST26]
          Length = 463

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 5/224 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+   SK  +   ++ +Y+  I   S  + NLV D+ 
Sbjct: 235 RSEFLASVAHELRTPLTYVRGYADI--ASKEATSPEQRLRYLSIIKDESDYITNLVQDLF 292

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +    + L+  L  + + +     E  I++       L   + D QR  
Sbjct: 293 SLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNL-DEQRFE 351

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   IL+NA   S + S + +    ++     ++++ G  IP +    +F+RF  V  A
Sbjct: 352 QVVVNILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKA 411

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 412 RSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLPS 455


>gi|298248601|ref|ZP_06972406.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551260|gb|EFH85126.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 1025

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLN-SKQS 607
           +AL E ++ L +A+ +K+  +   S+ELR+PLT I+G T L    LK S++   N +   
Sbjct: 143 QALAESHQQLERANNVKDYIIMRSSHELRTPLTTILGRTQLLSVRLKKSEVTPENWAAVQ 202

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QY+E + A +  L  L++ +  L+ V AG + L    I L  L +++ ++    +   +I
Sbjct: 203 QYLEVVEARALHLRALIDSLFKLSRVHAGEIPLRGKCIELGALCHKIVEN-QQNLSGRSI 261

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            IK+ +   L    A+ + + Q+   +++NA+ +SS+ S + + A  ++      ++N+ 
Sbjct: 262 EIKLPAQPLL--LQANEELVSQVVVNLVANAIKYSSETSAIQMGAQSNDHQVTLQIQNDH 319

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +  D  + +F  F   ++       G GLGL++ +  +  +GG +   SS+E   +  
Sbjct: 320 PGLSPDQLEHLFEPFYRTTDVEYSSIPGWGLGLTVCKEIVEQYGGQIWAESSEETGVSFF 379

Query: 786 CRIP 789
            ++P
Sbjct: 380 VKLP 383



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 26/286 (9%)

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            E +++     QTML  +       A+    +K  A R+   +   F+   S+ELR+PLT 
Sbjct: 743  EIALVKAVTGQTML-LIEGIHCFYAQGEKQKKALAQREVSCLTGEFLTLASHELRTPLTG 801

Query: 587  IIGFTDL----LKTSK--LGSLNSKQSQYVEYI-------SASSTILLNLVNDILDLATV 633
            I+G   L    L+T K  L   +++  + V +I       S  + +   ++ND++D A +
Sbjct: 802  IMGNLQLAQRRLETLKKQLAPPSAQIREPVAHIQRPLTAASQGTQLQQRIINDLIDDARI 861

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
                + L+ +   L  LL EV         E+ I + V S  +    +AD  R+  + + 
Sbjct: 862  QTHTLTLSLNPEDLLTLLREVVARQQQAAPEHTIVLDVPSPEQRVPIIADAGRIKHVLNT 921

Query: 694  ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
             L+NA+ +S  G  V+++    +     SV N G  I  +    ++ RF    +R +   
Sbjct: 922  YLTNALTYSPPGRPVVVQVRVADALARVSVHNEGPGIAREELDHIWERF----YRAKGSA 977

Query: 754  V--------GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V        GL L +   FI  H G V + S+ +   T    IPS+
Sbjct: 978  VQHELDLSFGLVLYLCRVFIERHQGSVGVESAPDQGATFWFTIPSQ 1023


>gi|218261732|ref|ZP_03476467.1| hypothetical protein PRABACTJOHN_02138 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223808|gb|EEC96458.1| hypothetical protein PRABACTJOHN_02138 [Parabacteroides johnsonii
           DSM 18315]
          Length = 769

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 109/208 (52%), Gaps = 10/208 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+++R+PL++IIG+ +LL   +    + +Q  Y+E ++ S+  +L+LVN +LD   +++
Sbjct: 284 ISHDIRAPLSSIIGYIELLLRRRP---DERQRYYLENMTGSADHILSLVNGLLDFHRLES 340

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQRLLQIFSK 693
           G M++      +  L NE+  S         +   + +  +G    +  D  RL Q+ S 
Sbjct: 341 GQMEIQNVPFSVRTLFNEIYGSFRPIAEAKGLAFVLNMKEEGMDRIYSGDPIRLRQVVSN 400

Query: 694 ILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           +LSNA+ F+ +G  V++     + +  +     +V ++G  IPE+  + +F  F   +  
Sbjct: 401 LLSNAVKFTHEGRIVLIVKLNCQLSIVHPQLSITVSDSGVGIPEEEQEKIFGEFARLSGT 460

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  G GLGLSI    I L GG +S+ S
Sbjct: 461 EKEEGFGLGLSITRKLIELMGGTLSLKS 488


>gi|28868689|ref|NP_791308.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851928|gb|AAO55003.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 1213

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 8/255 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           ++++T+    E+ L +      +A+E K+ F+  +S+E+R+P+  IIG  +L     L  
Sbjct: 690 WIDITERKLLEQQLEQAVRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEQAL-R 748

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              + +Q ++    S+T L+ L+ + LDLA ++AG M+L+     L      V    + +
Sbjct: 749 RGEEPTQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLVVTPLQTFFEGVLALFSAQ 808

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718
             E  + +++ +++   G +  D  RL Q+   +L NA+ F+ +G+ V+ ++ + D  D 
Sbjct: 809 AREKGLELRLELAEQARGDYWLDPLRLRQVVHNVLGNALKFTRQGAVVVKVEVSDDPPDA 868

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                 + ++G  I     + +F  F   A     R  G GLGLSI    + L  G +S+
Sbjct: 869 SRVRIGIMDSGVGIEPARQQQIFQPFTQAADDTAARYGGSGLGLSITRQLVELMKGDISL 928

Query: 775 SSSDEGVTTINCRIP 789
            S     T +   +P
Sbjct: 929 HSEPGKGTRVTVDVP 943


>gi|34497307|ref|NP_901522.1| sensory box histidine kinase/response regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|34103163|gb|AAQ59526.1| probable sensory box histidine kinase/response regulator
           [Chromobacterium violaceum ATCC 12472]
          Length = 552

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 129/262 (49%), Gaps = 15/262 (5%)

Query: 526 LEYSIIPLPNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E +I  +P    +   +T  +++    AE+ L   ++    A++ K +F+  +S+E+R+
Sbjct: 1   MEMAITRMPELDGIGFNMTLRDISARKAAEQELRRAHDQANAANQAKTAFLTTISHEIRT 60

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  ++G  +LL+ S+   L+ +Q   +     S+ +LL L++DILD A ++A  M++ Y
Sbjct: 61  PMNGVLGMLELLQMSR---LDEEQQDTLATARESAQLLLRLIDDILDFAKIEADQMEVVY 117

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +   +  LL +V    A       +R+++ + D   G+   D  RL Q+    LSNA+ F
Sbjct: 118 AATPIRPLLQQVHSLYAQAAERKGLRMELEMDDALAGALRVDPLRLRQVLQNFLSNAVKF 177

Query: 702 SSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           ++ GS V L+AA +  D       F V + G  +  D    +F  F        R   G 
Sbjct: 178 TATGS-VKLRAAVEADDGRRQRLRFDVTDTGIGMDRDQLARLFQPFTQAESDTARHYGGA 236

Query: 755 GLGLSIVESFINLHGGHVSISS 776
           GLGLSI      L GG V + S
Sbjct: 237 GLGLSISRRLATLMGGAVELQS 258


>gi|75761465|ref|ZP_00741431.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491047|gb|EAO54297.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 608

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 140/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ V 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNVD 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IPE
Sbjct: 482 ADPSI-LVKANRSRIEQVVVNLLSNAIRYTPDGEKIQVSIIEAEDTVKIEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|186686850|ref|YP_001870043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186469202|gb|ACC85002.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 835

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 11/243 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+   AE  + +  EA   A+  K+ F+ ++++ELR+PL  I+G+  +L+     +  
Sbjct: 351 DITERKSAELKILQAKEAAEVANHAKSEFLANMNHELRTPLNGILGYAQILQRDP--ATT 408

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           SKQ + +  I    + LL L+NDILDL+ ++   M L        + L    +    K  
Sbjct: 409 SKQQKGLSVIHQCGSHLLTLINDILDLSKLEVQKMDLYPQDFHFANFLTTTVEICRIKAE 468

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
           +  I  +        +  AD +RL Q+   +LSNA+ F+  GS      A  N +     
Sbjct: 469 QKGIAFRYHPANLPTAVHADDKRLRQVLLNLLSNAIKFTDFGSVKFTVEAISNEETADTR 528

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSI 774
                F V++ G  IP +  +++F  F     R +   G GLGL+I +  + + G  + +
Sbjct: 529 STRIRFLVEDTGIGIPTEKWQTIFLPFEQAGKRDRNSEGTGLGLAISQQIVQMMGSSIQV 588

Query: 775 SSS 777
           +S+
Sbjct: 589 NST 591


>gi|315304163|ref|ZP_07874542.1| histidine protein kinase SaeS [Listeria ivanovii FSL F6-596]
 gi|313627470|gb|EFR96224.1| histidine protein kinase SaeS [Listeria ivanovii FSL F6-596]
          Length = 347

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++  +E +   + ++S+++++P+ +I  F++ L    + +   KQ QY+  I   +  L 
Sbjct: 113 IKDGEEKRTELIANLSHDIKTPVASIRSFSEALLDGMIVTETEKQ-QYLRTIQRETVRLT 171

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +LV++++D+A +D     LN S I L+ L+  V +S   ++   +  I V  D       
Sbjct: 172 DLVDELMDVAAIDKKQPVLNRSRIWLDQLIINVLESFNVQLKREHRDIHVTIDPGCDPLY 231

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD+  + +I   ++ NA+ FS  G+T+ L+    +   +F VK+ G  I  +    +F R
Sbjct: 232 ADQPFVTRILCNLIENALKFSDAGTTIELRITSTDEATMFFVKDYGQGISSEDIPRIFER 291

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              V  +      G GLGL I ++   LHGG + + S  +  +T    IP
Sbjct: 292 LYRVEKSRNLAHGGSGLGLHIAKNLTELHGGTLQVESELQVGSTFILTIP 341


>gi|293372986|ref|ZP_06619355.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632054|gb|EFF50663.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 623

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 133/250 (53%), Gaps = 11/250 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++     
Sbjct: 378 DITELKRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENA--- 434

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++  Y   I  ++ +LLNL+ND++DL+ +++G ++L    + L +LL+E   S+A   H
Sbjct: 435 AEKELYNSLIGHNNKLLLNLINDVIDLSKIESGYLELRPDWVNLTELLDE---SVAEYAH 491

Query: 664 ENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    ++++++      +   D+ R+ QI S  LSNA+  ++ G   +     D+     
Sbjct: 492 QVPSGVELLTNYPAHDSLVELDKLRIKQILSNFLSNALKNTTTGHVEVFYEV-DHQSVRI 550

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  IP++M + +F RF       Q  G GLGL I +  +    G + + S     
Sbjct: 551 GVKDTGRGIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIG 608

Query: 782 TTINCRIPSK 791
           TT    +P +
Sbjct: 609 TTFIIELPCR 618


>gi|228988692|ref|ZP_04148778.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771143|gb|EEM19623.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 588

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L      + N    Q++      +  ++ LVN +L L+
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQNPNIA-PQFLTVTQEETERMIRLVNALLQLS 419

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 420 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 477

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 1383

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 7/238 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EAL + D  K  F  ++S+ELR+PLT I+G  + L  S   SL+  +   +  I A 
Sbjct: 340 KRAEALTELDRAKTVFFSNISHELRTPLTLILGPIEALLHSDESSLS--KGDRISLIMAQ 397

Query: 617 STILL--NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +L    LVN +L+ + ++AG ++  Y    L    +++     + M +  I   V   
Sbjct: 398 RNVLRLQKLVNTLLEFSRLEAGRIQAFYQPTDLATFTHDLASVFRSAMEQAGIEFSVNCP 457

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   DRQ   +I   +LSNA  F+ +G  + L  A         +++ G  I  + 
Sbjct: 458 PLPELIYVDRQMWEKIVLNLLSNAFKFTFEGE-IRLSLAWTGERVKLDIQDTGVGIAPEE 516

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F RF  V         G G+GLS+V   +NLHGG + ++S+ E  T     IPS
Sbjct: 517 IPHLFQRFHRVLGVRSRTHEGSGIGLSLVRELVNLHGGTIEVNSTLEAGTCFTIYIPS 574



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 111/230 (48%), Gaps = 9/230 (3%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            LTE  E L+K +E  + F   VS++L++PL  I   +  ++      +  +  Q +E + 
Sbjct: 1152 LTETAELLQKKNEELDQFTYIVSHDLKAPLRAIANLSQWIEEDLSDIIPPESQQQIELLR 1211

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                 +  L+N++LD A +  G  +     + +  LL E+  S+A         +++  D
Sbjct: 1212 QRVYRMDQLINNLLDYARI--GRSEATKERVEVAQLLEEIIDSLAPP---PTFTLEI--D 1264

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPED 733
              + + + ++  L Q+FS ++SN +    K    +  + ++  +F  F + ++G  IP D
Sbjct: 1265 LPMPTLMTEKLLLSQVFSNLISNGIKHHGKDQGKLKISVQEQNNFYQFLIADDGQGIPVD 1324

Query: 734  MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVT 782
              + +F  F +   +  +   G+GLSIV+  + + GG + +SS   EG T
Sbjct: 1325 YQEKIFAIFQTVKSKDNKDSTGIGLSIVKKIVEIQGGKIMVSSQVGEGTT 1374


>gi|182420032|ref|ZP_02951266.1| sensory transduction histidine kinase [Clostridium butyricum 5521]
 gi|237669506|ref|ZP_04529486.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376069|gb|EDT73656.1| sensory transduction histidine kinase [Clostridium butyricum 5521]
 gi|237654950|gb|EEP52510.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 473

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+L K +  +  F+ +VS+ELRSP+T+I GF   +    +     K+++Y+E        
Sbjct: 233 ESLEKVEMNRRDFISNVSHELRSPITSIKGFIAGIIDGVIPK--DKENEYLERAYFEIQR 290

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           L  L+ND+LDL+ + +G +KLN   + +N+L+     +   K+ E  I +KV + D K  
Sbjct: 291 LTRLINDLLDLSAISSGKLKLNIKKVDINELIRRCIINSERKLKEKGIILKVYLQDDK-- 348

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            FV  D  +++Q+ + +L N++ +      +  +    N   +  + NNG  + E+    
Sbjct: 349 CFVNTDEDKIIQVVTNLLDNSIKYCGDNGIITCRIYYKNNKVLVEIYNNGPKLSEEEKIH 408

Query: 738 VFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +++RF  S+  R  +   GLGL IV   +N  G  V
Sbjct: 409 IWDRFYKSDKSRTNKVSTGLGLPIVRMLLNEMGEEV 444


>gi|167769054|ref|ZP_02441107.1| hypothetical protein ANACOL_00377 [Anaerotruncus colihominis DSM
           17241]
 gi|167668694|gb|EDS12824.1| hypothetical protein ANACOL_00377 [Anaerotruncus colihominis DSM
           17241]
          Length = 901

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 146/289 (50%), Gaps = 17/289 (5%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD----SVRAERALTEKNEALRKA-- 565
           +  +G + L+   +  Y   P+P+A      + +      S+   R   EKN+A  +A  
Sbjct: 613 RGARGAMGLVGIPIAGY---PIPDASEKNFMIAILSECGLSLERLRLQEEKNQAALQAQK 669

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + ++ + ++ VS++LR+PLTNI G   +L   +    ++ + +    I   +  L+++  
Sbjct: 670 EHLQANLLRAVSHDLRTPLTNISGSASILMQKECPLDDAAKERLYTGIYDDTNWLISMTE 729

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++L    ++A    L     +L D+       +  +  E+NI I V+ D  L + + + +
Sbjct: 730 NLLAATHLEADKGALPMEPQLLEDIFQSAATQLDRRAREHNISI-VLQDPMLMANI-NAK 787

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS 744
            +L++   I++NA+ ++  GS ++L   R  GD +  S+ ++G  IP++  K +F+ F +
Sbjct: 788 LILRVIINIMNNAIQYTPNGSHIVLSGER-KGDMVEVSISDDGPGIPDEAKKHLFDLFYT 846

Query: 745 NAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            A +G+   +RG+GLGL++  S I  H G +++S +    T     +P+
Sbjct: 847 -AEQGRSDCQRGLGLGLNLCRSIIAQHNGQITVSDNRPSGTVFRFTLPA 894


>gi|1747434|gb|AAB39095.1| KdpD [Clostridium acetobutylicum ATCC 824]
          Length = 900

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 576 VSYELRSPLTNIIGF-TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +S++LRSPL  I G  + +L+  +L     KQ + +  I   +  L+ L+ ++L +   D
Sbjct: 684 ISHDLRSPLAGIKGAASTILENGELIDEKRKQ-ELINGIYEDTEWLIRLIENLLSMTKFD 742

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            G  K+     ++ ++++E  Q  +     + I++ V  D  + S   D   + Q+   +
Sbjct: 743 EGNTKIKKDVELVEEVVSEAVQRSSKYFKNHKIKVSVPEDVIMVSM--DGSLIEQVIINL 800

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRR 752
           L NA  FS KGST+ +K      D +F + + G  I ED+  ++F+RF +N  +    RR
Sbjct: 801 LDNASKFSPKGSTIEIKVYEKKKDVVFEIIDEGQGISEDILPNIFDRFFTNGSKISDSRR 860

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GVGLGL+I +S +  HGG +   +   G       IP
Sbjct: 861 GVGLGLAICKSIVEAHGGKIEAVNKGSGGAIFKFNIP 897


>gi|295109684|emb|CBL23637.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 850

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 140/270 (51%), Gaps = 25/270 (9%)

Query: 537 QTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +L  ++VT   +AE    +AL E   +   A+  K  F+ ++S+++R+P+  I+G T 
Sbjct: 523 KVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTA 582

Query: 593 LLKTSKLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +      G+    Q + +E    I+ SS  LL L+N++LD+A +++G M L      L++
Sbjct: 583 I-----AGANIESQDRVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSE 637

Query: 650 LLNE---VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L++    + Q +  + H++N  I  I+  +      D  R+ Q+F  ++SNA+ ++  G 
Sbjct: 638 LVDNLITLTQPVLDE-HKHNFDIH-INHIEHEDVCGDSLRIQQVFVNLMSNAIKYTPDGG 695

Query: 707 TVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLGL 758
            +I           + G + F+++++G  +  +  K +F+ F  ++ HR  R +G GLG+
Sbjct: 696 NIIFSIEEKPNGFSELGCYEFTIEDDGIGMSPEFQKIMFDPFSRADDHRTTRVQGTGLGM 755

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I  + +NL  G++ + S+    T I   I
Sbjct: 756 AISRNIVNLMNGNIKVDSTLHQGTKITVTI 785


>gi|224825187|ref|ZP_03698293.1| osmosensitive K+ channel signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
 gi|224602858|gb|EEG09035.1| osmosensitive K+ channel signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
          Length = 890

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 111/229 (48%), Gaps = 4/229 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           ++D ++N+ +  +S++LR+PLT++IG  D L+   L   +S + + ++ +   +  + +L
Sbjct: 657 ESDRLRNTLLTTLSHDLRTPLTSLIGVADTLQRDDLA--DSARHELLQSLQDEARRMGSL 714

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++LD+A + A  + L      + ++     + ++  +  + I   +  +  L  F  D
Sbjct: 715 VGNLLDMARLQAEGVTLKKDWQSIEEVAGSALRQMSIPLARHAIATDLPPELPLCEF--D 772

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
              + ++   +L NA  ++  GS V L A  D      SV +NG  +P      +F++F 
Sbjct: 773 ALLIERVLVNLLDNAAKYTPPGSEVRLSARVDGRWLAVSVSDNGPGLPPGDPTRLFDKFT 832

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                    GVGLGL++  + ++ HGG +   +  EG      R+P  E
Sbjct: 833 RGHGESAIPGVGLGLALCRTILDAHGGQIRAENRPEGGARFTFRLPLGE 881


>gi|167997627|ref|XP_001751520.1| ETR1 ethylene receptor [Physcomitrella patens subsp. patens]
 gi|162697501|gb|EDQ83837.1| ETR1 ethylene receptor [Physcomitrella patens subsp. patens]
 gi|163644192|dbj|BAF95746.1| ethylene receptor homolog [Physcomitrella patens]
          Length = 767

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 54/290 (18%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S RA   L E+N AL   R+  EI    +N F+  ++YE+R+PL  +I  + LL+ + L
Sbjct: 314 ESRRARNLLVEQNVALDMARREAEIAICARNDFLAEMNYEMRTPLHAVIALSSLLQETLL 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +Q   V+ I  SS +L  L+ND+L L+ ++ G ++L+     L ++  EV + +A
Sbjct: 374 ---TPEQRSMVDTILKSSNLLATLINDVLGLSRLEDGRLELDARIFSLPNVFREVVKLVA 430

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
             +    ++  +     L  F V D +RL+QI   ++ NA+ F+  GS  I +   RD  
Sbjct: 431 PIISVKKLKSDLSVSKDLPEFVVGDEKRLMQILLNVVGNAVKFTKDGSVAIRVSLERDRT 490

Query: 718 DF------IFSVKNNGSSIP---------------EDMC------------------KSV 738
           D+      +    + G  IP               E  C                   ++
Sbjct: 491 DYQREPRSLREPPSQGEYIPQRESHSQRDLNLSSGEQCCYIRVEVVDTGVGLNPQDIANL 550

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV-TTIN 785
           FN+F+       R     GLGL+I + F+ L GG + + S   G  TT+N
Sbjct: 551 FNKFIQADSSSARNHEETGLGLAICKRFVYLMGGDIWVDSEGLGKGTTVN 600


>gi|163791511|ref|ZP_02185917.1| sensor histidine kinase ResE [Carnobacterium sp. AT7]
 gi|159873234|gb|EDP67332.1| sensor histidine kinase ResE [Carnobacterium sp. AT7]
          Length = 598

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 114/225 (50%), Gaps = 12/225 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D ++N F+ ++S+ELR+PL  I G+++ +    +     ++ +  + I   S  +  
Sbjct: 359 KRLDIMRNDFINNISHELRTPLVMIQGYSEAI-LDDVAETQEEKKEMAKIIGEESIRMNR 417

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +VN++LD + ++AG + L    +   D    +    AT   +N I++K+  D  L S+  
Sbjct: 418 MVNEMLDSSRMEAGFINLIKLDVDFEDFFKNLFTRFATMSEKNAIQLKLTLDPNLESYYM 477

Query: 683 DRQRLLQIFSKILSNAMDFSS------KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           D  ++ Q+F  +++NA+  +S      K   + +   +   + +  V +NG+ I E+   
Sbjct: 478 DEDKMNQVFVNLINNAIRHTSMTNKENKKVEIWVHLDKIMDEVLIEVIDNGTGISEEDVP 537

Query: 737 SVFNRFVSN-----AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            VF+RF          +  + G G+GLSIV++ I  HGG V + S
Sbjct: 538 YVFDRFYKADKSRMVTKENKTGTGIGLSIVKNIIEAHGGFVEVKS 582


>gi|149174016|ref|ZP_01852644.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846996|gb|EDL61331.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 540

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 141/269 (52%), Gaps = 30/269 (11%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR----KADEIKNSFVQHVSYELRSP 583
           +  IP P   + +    V +++RA + L E+ + LR     A++ K++F+ ++S+E+R+P
Sbjct: 104 FDYIPKPATDSEIK-ARVRNAIRALQLLREQ-KTLRIQAEAANQSKSAFLANMSHEIRTP 161

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS-STI------LLNLVNDILDLATVDAG 636
           +T I+G+TD+L+      L +K  Q  E IS S  TI      L+ L+NDILDL+ ++AG
Sbjct: 162 MTAILGYTDILE------LEAKSLQLPELISDSLDTIKRNGGHLMELINDILDLSKIEAG 215

Query: 637 IMKLNYSTIVLND--LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
             KL+  +I  +   ++ EV + +  +     ++++      L + + +D  R+ QI   
Sbjct: 216 --KLDVESICCSPQTIVEEVLELVQVRAEAKGLKLEASYQFPLPAEIHSDPTRIRQILIN 273

Query: 694 ILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           ++ NA+ F+  G+    T  L+   +     F+V + G  + E    ++F  F       
Sbjct: 274 LIGNAIKFTEVGTIRLNTSFLENPGEEPQVQFTVIDQGIGMTEAQMSNLFRPFSQADSST 333

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISS 776
            R+  G GLGL+I +   ++ GG +S++S
Sbjct: 334 TRKYGGTGLGLTICKRLTDVLGGDISVTS 362


>gi|145633773|ref|ZP_01789497.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 3655]
 gi|145635654|ref|ZP_01791351.1| GTP cyclohydrolase II [Haemophilus influenzae PittAA]
 gi|144985344|gb|EDJ92174.1| aerobic respiration control sensor protein ArcB [Haemophilus
           influenzae 3655]
 gi|145267127|gb|EDK07134.1| GTP cyclohydrolase II [Haemophilus influenzae PittAA]
          Length = 598

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  IAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    +
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKQ 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|126175349|ref|YP_001051498.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS155]
 gi|125998554|gb|ABN62629.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 932

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 13/230 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y++ I  S
Sbjct: 288 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYIKTIERS 342

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + + +    I+       + + V I+  
Sbjct: 343 ATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPN 402

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++   L++  +    +   V + G  I 
Sbjct: 403 VPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGID 462

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           E     +F  F        RR  G GLGL I +  +N  GG +  +SS E
Sbjct: 463 ESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPE 512


>gi|313885404|ref|ZP_07819154.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619134|gb|EFR30573.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 618

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K ++ +  FV +VS+ELR+PLT++  +++ L    L   +  Q  ++E I   S  ++ +
Sbjct: 373 KTNQERRDFVSNVSHELRTPLTSVKSYSEALLDGALQDTSLAQP-FLEVIQLESNRMIRM 431

Query: 624 VNDILDLATVDAGIMKLNYSTI----VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           V+++LDL+ +D G + L    +    V++ +++ ++ ++ +   + N +I      +   
Sbjct: 432 VSNLLDLSKIDGGQIILQKDLVDFKRVVDHIVDRMEFTLESGQRDKNYKIVRHYTPRDIY 491

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D+ R+ Q+   +++NA+ +S  G  + +    +    IFSV + G  I +   + +F
Sbjct: 492 VDIDQDRMTQVIDNLINNAIKYSPDGGKITIGLEDNRDSVIFSVSDQGLGISQVDAEHLF 551

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  A   ++ G GLGL+I +  + LHGG + + S +   +T +  +P
Sbjct: 552 ERFYRVDKARSREQGGSGLGLAISKEVVELHGGRIWVESIENEGSTFSFELP 603


>gi|223413886|gb|ACM89302.1| ethylene receptor ERS1a [Eriobotrya japonica]
          Length = 498

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 129/266 (48%), Gaps = 38/266 (14%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +S+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  II  +        
Sbjct: 175 ESMRARAQLVEQNNALDLARREAEMAIHARNDFLAVMNHEMRTPMQAIIALS---SLLLE 231

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E +  SS +L  L+ND+LDL+ +D G ++L+     L+ +  EV   + 
Sbjct: 232 TELTPEQRLMIETVLKSSNLLETLINDVLDLSRLDDGSLELDNEIFNLHGVFREVMNLVR 291

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
                  + + +I    L    V D  RL+Q    +  NA+ F+ +G   I+      ++
Sbjct: 292 PIASVKKLSMTLILAPDLPVCAVGDENRLMQTILNVAGNAVKFTKQGYISIIASVAKPES 351

Query: 713 ARD-----------NGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR---GVG 755
           +RD           +G F     VK++G  + PEDM   VF +F S    G  R   G G
Sbjct: 352 SRDWQPPEFYPASTDGHFYLRVQVKDSGCGVLPEDM-PHVFTKF-SQPRNGSNRINEGAG 409

Query: 756 LGLSIVESFINLHGGHVSISSSDEGV 781
           LGL+I + F+N  GGH+ I S  EG+
Sbjct: 410 LGLAICKRFVNTMGGHIWIES--EGI 433


>gi|217972408|ref|YP_002357159.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS223]
 gi|217497543|gb|ACK45736.1| Hpt sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 933

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 13/230 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y++ I  S
Sbjct: 289 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYIKTIERS 343

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + + +    I+       + + V I+  
Sbjct: 344 ATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPN 403

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++   L++  +    +   V + G  I 
Sbjct: 404 VPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGID 463

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           E     +F  F        RR  G GLGL I +  +N  GG +  +SS E
Sbjct: 464 ESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPE 513


>gi|168033671|ref|XP_001769338.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162679444|gb|EDQ65892.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 369

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 123/248 (49%), Gaps = 10/248 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V+A   L    +    A   K+ F+ ++S+E+R+P+  I+G T LL  S+   L + Q +
Sbjct: 7   VKANNELLISQKRAEHASHAKSDFLANMSHEIRTPIHGILGLTALLLESQ---LTADQRE 63

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  +   + +LL+++N +LDL+ ++AG + +      +  +++   + +  +   +N++
Sbjct: 64  SLMSVKECADLLLHIINSVLDLSKIEAGRLDIETVPFSIRKMVSSTLRMMQARAQAHNLQ 123

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSV 723
           +    +G +  + V D  +L Q    ++ NA+ F+++GS  +      +     D  F V
Sbjct: 124 LLWHIEGAVPDNLVGDPGKLQQCLLNLVGNALKFTNEGSVTVRIFSQPSTPKTVDVEFEV 183

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I ++  + +FN F        R   G GLGL IV+ F+ L GG +   S +   
Sbjct: 184 QDTGIGISKEKLQDMFNPFTQADASTSRLYGGTGLGLCIVKRFVELLGGTIWAESEENKG 243

Query: 782 TTINCRIP 789
           +T   R+P
Sbjct: 244 STFGFRVP 251


>gi|160876397|ref|YP_001555713.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS195]
 gi|160861919|gb|ABX50453.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315268587|gb|ADT95440.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 933

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 13/230 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y++ I  S
Sbjct: 289 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYIKTIERS 343

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + + +    I+       + + V I+  
Sbjct: 344 ATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPN 403

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++   L++  +    +   V + G  I 
Sbjct: 404 VPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGID 463

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           E     +F  F        RR  G GLGL I +  +N  GG +  +SS E
Sbjct: 464 ESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPE 513


>gi|113969453|ref|YP_733246.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-4]
 gi|113884137|gb|ABI38189.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 935

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 14/232 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y+  I  S
Sbjct: 291 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYINTIERS 345

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + L E    I+       + + V I+  
Sbjct: 346 ATNLLAIINDILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVDIAPN 405

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++    ++  D        V + G  I 
Sbjct: 406 VPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTGIGID 465

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780
           +     +F  F        RR  G GLGL I +  +N  GG +  +S+ D+G
Sbjct: 466 DSQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKG 517


>gi|309972657|gb|ADO95858.1| Aerobic respiration sensor-response protein ArcB [Haemophilus
           influenzae R2846]
          Length = 598

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + + + A++ L++  E L K    K++ +  +S+E R+PL  I+G + +L       L+ 
Sbjct: 98  IAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDD---ELDD 154

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y++ I+ S+  L  + +DI+DL  +DA  ++LN        LLN++    +    +
Sbjct: 155 LQRNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKQ 214

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            N+   +  +  L +++  DR RL QI   ++SNA+ F+ +G+ +ILK  R+   + F V
Sbjct: 215 KNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGN-IILKIMRNQDCYHFIV 273

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  K +F  +      R Q  G G+GL+I ++   L  G +++ S      
Sbjct: 274 KDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMEGDLTVESERGKGA 333

Query: 783 TINCRIPSKE 792
           T +  + ++E
Sbjct: 334 TFHLTLHAQE 343


>gi|241206010|ref|YP_002977106.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859900|gb|ACS57567.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1128

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    +    + + AL    E    A+  K+ +V  +S+ELR+PL  ++G+  +L+ 
Sbjct: 645 QNTLLLKEIAAHKKTDAALQNAKETAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILER 704

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  ++ + +   ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L+++  
Sbjct: 705 DE--TIPAPRQSSIKVIRRSAEHLSGLIDGLLDISKIEAGRLQVYSNEINIQDFLDQIVD 762

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     +         L  FV  D +RL QI   +LSNA+ F+ +GS V       
Sbjct: 763 MFRPQAQAKGLAFIHERAPALPQFVRTDEKRLRQILVNLLSNAIKFTDEGS-VTFDVGYR 821

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           +    F+V + G  I E     ++  F        R   G+GLGL+I     N  GG +S
Sbjct: 822 SQVATFTVADTGRGITEKDLPRIYEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEIS 881

Query: 774 ISSSDEGVTTINCRI 788
           +SS  E  +T   R+
Sbjct: 882 VSSVKEEGSTFRVRL 896


>gi|153001659|ref|YP_001367340.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS185]
 gi|151366277|gb|ABS09277.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 933

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 13/230 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y++ I  S
Sbjct: 289 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYIKTIERS 343

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + + +    I+       + + V I+  
Sbjct: 344 ATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPN 403

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++   L++  +    +   V + G  I 
Sbjct: 404 VPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGID 463

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           E     +F  F        RR  G GLGL I +  +N  GG +  +SS E
Sbjct: 464 ESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPE 513


>gi|119964677|gb|ABM17106.1| sensor histidine kinase [Sulfobacillus acidophilus DSM 10332]
          Length = 477

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 124/254 (48%), Gaps = 28/254 (11%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  +  + E LR+  E +++ + HV+++LR+PLT+I GF + ++    G    +Q + 
Sbjct: 237 RLQDRIERQMEQLRREAEARDALLAHVAHDLRTPLTSIRGFLEAIED---GVATGEQQKR 293

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             +++   T+ L  + D            +L  +T + +   +  + ++   + +   R+
Sbjct: 294 AIHVAWEETLRLQRLVD------------RLLKATRIWSQTGSRERLALQAWVGKTIERV 341

Query: 670 KVISD-GKLGSFVADRQ---------RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           + ++D  ++G    +RQ          L++    +L NA+ +S  GSTV + +   +G  
Sbjct: 342 RPVADRAQVGVVWQNRQDGVMWGNEDYLMEALMNVLDNAIKWSPPGSTVEVISDVVDGQA 401

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSSD 778
           +  V + G  IP+++   VF RFV+      R+G  GLGL+IVE  +  H G V I    
Sbjct: 402 VIEVDDQGPGIPDELLPRVFERFVTGDL--SRQGSSGLGLAIVEDVVRQHQGSVVIERRP 459

Query: 779 EGVTTINCRIPSKE 792
           EG T +  R P +E
Sbjct: 460 EGGTRVTLRFPVEE 473


>gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 1159

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 122/246 (49%), Gaps = 5/246 (2%)

Query: 546 TDSVRAERALTEK-NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           T  ++ +  LT K N +L++AD++K+  + + S+ELR+P+  I G  + +  S+   L  
Sbjct: 464 TQELQQQVKLTHKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQ-QDLTE 522

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + +  I  S+  L  LV+D+LD   +  G ++++   +    ++  V       +  
Sbjct: 523 GQQKQLGLIIKSADGLARLVDDLLDYHQMRYGQLEIHPQPVSSKGVIRLVLDLCQHLVQA 582

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723
             + +  IS  +L   +AD QRL Q+   ++ NA+ ++ +G  V+  +A   G+F+   V
Sbjct: 583 KPLTLVDISPVELPPVLADEQRLEQVLYNLVGNAIKYTPQGKVVL--SALVEGNFLRIKV 640

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I  D  + +F   V  +    ++G GLGLSI    ++L GG + + S     +T
Sbjct: 641 TDTGIGIAPDHLEHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGST 700

Query: 784 INCRIP 789
               +P
Sbjct: 701 FAFTLP 706


>gi|331085548|ref|ZP_08334632.1| hypothetical protein HMPREF0987_00935 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407435|gb|EGG86937.1| hypothetical protein HMPREF0987_00935 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 450

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +N    KA E++  F  +VS+EL++PLT+I G+ +++K   +   + K   + E I   +
Sbjct: 208 QNREKEKAAEMRKEFSANVSHELKTPLTSISGYAEIMKNGLVRPEDMK--GFSERIYNEA 265

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           + L+ LV DI+ ++ +D   ++L    + L  L+ E+   +A +  + ++R +V   G+ 
Sbjct: 266 SRLITLVEDIIKISKLDEKSIELEKQEVDLYLLVREICTRLAPQAEKKSVRFEV--SGEH 323

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            S+   RQ L ++   +  NA+ ++ KG  V +            V++ G  IPE+  + 
Sbjct: 324 VSYNGIRQILDEMIYNLCENAVKYNVKGGKVSVWTGNTLEGPKVIVEDTGIGIPEEEKER 383

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           VF RF  V  +H  +  G GLGLSIV+    LH   + ISS+
Sbjct: 384 VFERFYRVDKSHSRENGGTGLGLSIVKHGALLHDAKIQISSN 425


>gi|329930360|ref|ZP_08283949.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328935086|gb|EGG31572.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 683

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 126/273 (46%), Gaps = 15/273 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSV----RAERALTEKNEALRKA---DEIKNSFVQHVSYELR 581
           +I+PL     ML FV VT ++    R  RA T+ ++  R+    D +K+ F+ + S+ELR
Sbjct: 393 AIVPL----EMLLFV-VTQAMLLAQRFSRAFTDVDQLSRRLLTLDGLKDEFMANTSHELR 447

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+     L     GS++ +QS+ +  I ++   L  LVNDILD + +  G + L 
Sbjct: 448 TPLHGIVNIAQSLMDGSSGSVSDRQSRELSMIVSTGKRLSTLVNDILDFSKLKNGEIVLK 507

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L  +   V + +        + +K      L     D  RL QI   +L NA+ F
Sbjct: 508 RQPVDLKAVTQSVLEVVTHLAAGKPLSLKQEWPDNLPWLDTDEDRLRQILYNLLGNAVKF 567

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           +  G TV + A   NG    SV + G  I  +    VF  +  +  A   +  G G+GLS
Sbjct: 568 TETG-TVQVTAHALNGHVRVSVTDTGIGISPERLIDVFKSYDQIGYASDREYSGTGIGLS 626

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +  + L GG +   S     +  +  +PS +
Sbjct: 627 ITKKLVELGGGEIWAESMPGAGSAFHFTLPSTQ 659


>gi|294627636|ref|ZP_06706218.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292597988|gb|EFF42143.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 603

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 176/406 (43%), Gaps = 32/406 (7%)

Query: 410 GGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G   W+ +  +  ++  E +Y          +  + E + +     RI L NPAF  L+ 
Sbjct: 199 GTVTWLLQRQIRRRLAAEQEYLRANGRASSVLQTVREPIVLLDASQRIVLHNPAFADLYG 258

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT------SFDDERKSLQGTLELLS 522
            EE     G  +  +       + ++      A ++        ++ E+++  G L  + 
Sbjct: 259 LEER----GNELMALEDVGRGVWRDAQIHQRLADVLLRGRELWDYEHEQRAADGVLRTM- 313

Query: 523 DSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNS 571
             ++    +PLP+       ++T  +++    A+       R +  K E + + +    +
Sbjct: 314 --LINARRMPLPDTTDEDVVLMTVSDISLQKAAQLRIHELNRQMEGKVEQVSEVNRELEA 371

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F   VS++LR+PL ++ GF+D L      + + K   Y+E IS+S+  + +L++D+L  +
Sbjct: 372 FSYSVSHDLRAPLRHVAGFSDKLARHLGDTADEKSRHYMEVISSSARRMASLIDDLLVYS 431

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
            +  G ++L    + +  L+ E +  + + +   N   +V      L   VAD   + Q+
Sbjct: 432 RLGRGALRLQ--AVDMQSLVAETRAILDSNVQSENTGHRVEWHIAPLPVLVADENMMRQL 489

Query: 691 FSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           +  +L NA+ +S+K     ++ +     +G   FSV++NG+    +    +F  F     
Sbjct: 490 WMNLLGNAVKYSAKREVAKIEVSYTPMSDGGHQFSVRDNGAGFDMEYSGKLFGVFQRLHK 549

Query: 748 RGQRRGVGLGLSIVESFINLHGGHV-SISSSDEGVTTINCRIPSKE 792
             +  G G+GL+ V   +  HGG V +    DEG T      P+ E
Sbjct: 550 ASEYAGTGIGLASVRRVLTRHGGRVWAEGVVDEGATFYFVLPPALE 595


>gi|284047510|ref|YP_003397849.1| histidine kinase [Acidaminococcus fermentans DSM 20731]
 gi|283951731|gb|ADB46534.1| histidine kinase [Acidaminococcus fermentans DSM 20731]
          Length = 576

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 114/233 (48%), Gaps = 13/233 (5%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           R+ ++++  F  +V++EL++PLT+I GF +L+     G    K+  + + + I   +  L
Sbjct: 349 REREQLRRDFTANVTHELKTPLTSISGFAELMAA---GMYQKKEDITHFGQLIRKEAARL 405

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--KMHENNIRIKVISDGKLG 678
           L ++N I+ L+ ++    +     + L  L+  V + +    K  +  I   +  D   G
Sbjct: 406 LEMINSIIFLSRIEEVPAEALQEEVPLGGLIQSVVEFMDPFCKDRQVTIHCHLTEDKVRG 465

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S       L ++   ++ N + ++  G  V +   RD    + +VK+ G  IPED+ + V
Sbjct: 466 SSSM----LREMAMNLIDNGVKYNRPGGHVYVTMGRDGDQVVLTVKDTGIGIPEDVQERV 521

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF  V  +   Q  G GLGLSIV+  +  H G + ++S     T+I  ++P
Sbjct: 522 FERFYRVEGSRSKQSGGSGLGLSIVKHIVEQHRGKIRLTSRVNEGTSIEVQLP 574


>gi|229094576|ref|ZP_04225643.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
 gi|229187694|ref|ZP_04314830.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228595762|gb|EEK53446.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228688823|gb|EEL42654.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
          Length = 588

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 419

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 420 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 477

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|255534130|ref|YP_003094502.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255347114|gb|ACU06440.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 374

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 13/264 (4%)

Query: 522 SDSVLEYSIIPLPNAQTML---TFVNVTDSVRA----ERALTEKNEALRKADEIKNSFVQ 574
           S   L+Y   P+     +L   TF  + +  R     ++AL ++ E  + A+  K+ F+ 
Sbjct: 94  SSGGLDYITKPVDMGVLLLKVKTFYRIYEQSRKLIEIQKALLDEIEFRKMAERKKDEFIS 153

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             S+EL++PLT++ G+  LL  S          +++         L  L+ D+LD++ ++
Sbjct: 154 IASHELKTPLTSVKGYVQLLGRSVDKGDIPTVKKHLAKAQVQLEKLNELIADLLDISKIE 213

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
           +G +K N    VL+ LL+ V + I    H+ N    +I  G     + AD  R+ Q+   
Sbjct: 214 SGKLKFNKKYFVLDALLDGVLEVI----HQANPTFNIIRKGNAPQEIYADEMRIEQVIVN 269

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRR 752
            L+NA+ +S   + + +      G     V++ G  I  ++ K+VF +F          +
Sbjct: 270 FLTNAIKYSPGTNEIEVNVKVGEGQLYLGVRDFGIGIAPELQKNVFEKFYRVEETAIHFQ 329

Query: 753 GVGLGLSIVESFINLHGGHVSISS 776
           G+G+GL I    IN HGG V + S
Sbjct: 330 GLGIGLYISAEIINRHGGEVGVKS 353


>gi|188589011|ref|YP_001922198.1| two-component sensor kinase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499292|gb|ACD52428.1| two-component sensor kinase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 507

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 125/241 (51%), Gaps = 4/241 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + EK +A R A++ K   + +VS++LR+PLT+I+G+  L++  +  +   + ++Y+  
Sbjct: 267 KEIGEKIQAERDAEKTKTDLITNVSHDLRTPLTSIMGYIGLVREDRYKN-KEEMNEYLNI 325

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  L  L+ D+ +   ++   MKL+   + L +LL+++ + +   + EN + I   
Sbjct: 326 AYNKAQKLNILIEDLFEYTKLNNNGMKLSKEKVNLCELLSQLIEEMTPIVDENLVSINKK 385

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D        D  ++L++F  ++ NA+ +S K   +I+   + +    F  +N G  I +
Sbjct: 386 FDIDKAYVFIDIVKMLRVFENLIMNAVKYSIKPGEIIIGLYQKDDYITFVCRNKGEYISK 445

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT-TINCRIP 789
           +    VF+RF  V  +      G GLGL+I ++ INLH G +     D+ ++  +N +I 
Sbjct: 446 EKLDKVFDRFYRVDESRNTNTGGSGLGLAISKNIINLHEGKIWAECIDDNISFYVNLKIE 505

Query: 790 S 790
           +
Sbjct: 506 N 506


>gi|34499673|ref|NP_903888.1| two-component system sensor kinase [Chromobacterium violaceum ATCC
           12472]
 gi|34105524|gb|AAQ61878.1| probable two-component system sensor kinase [Chromobacterium
           violaceum ATCC 12472]
          Length = 467

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 10/251 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D  R  R L + +  L + ++ K  F + VS+EL++PL +I     LL+    G LN +
Sbjct: 221 ADLQRLGRELEQLDLRLVELEQQKTRFFRQVSHELKTPLASIHEAAALLREQVAGPLNPQ 280

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIM---KLNYSTIVLNDLLNEVKQSIATKM 662
           Q   V+ +  ++  L   V  +L     DAG      LN S   L  L+ +   S     
Sbjct: 281 QRHIVDILGNNAQTLRQRVEALL---RQDAGPWLSSALNISAFPLRSLIEDRLASCQPLW 337

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
                R+ V  DG  G    D  ++  I   +L NA+  S  G  + L+ AR+ G     
Sbjct: 338 QAK--RLTVALDGPAGLVRGDASKVETIVDNLLLNAIRHSPPGGRLALRFARERGQVWLE 395

Query: 723 VKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V + G+ +P ++   +F  F S  A  G+R G GLGL++   +  L GG + +     G 
Sbjct: 396 VADQGAGVPGELRDRIFEPFWSGPAPDGERPGSGLGLTMARGYAQLMGGELRLLGDGPG- 454

Query: 782 TTINCRIPSKE 792
           T      P  E
Sbjct: 455 TCFRLHWPEPE 465


>gi|317497327|ref|ZP_07955650.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895396|gb|EFV17555.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 430

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 4/225 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV   S+EL+SPL  +I  TD+L  +    LN +  Q V+ I      L  LV D+L
Sbjct: 208 QKDFVATASHELKSPLAVMISNTDMLLDNV--PLNEQARQAVQTIDFECMRLSRLVKDML 265

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
            LA+ DA    L+ STI ++ LL  + ++      + N+ +K+ +S+    + + D+ RL
Sbjct: 266 LLASSDAKTWTLHKSTINVDTLLITLYETYEPVCMKQNLELKLHLSEESYPAMLTDKDRL 325

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NA 746
            QI    + NA+  S   S + ++   +  +  FSV ++G  I ++  + +F+RF S + 
Sbjct: 326 FQILCVFMDNAIQHSKNNSLIEIEVIANEKNIAFSVVDHGQGISDEDKQYIFDRFYSGDK 385

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +   GLGLSI +    +  G ++I+ +  G  T   + P K
Sbjct: 386 SHTNKSNFGLGLSIAKELTQMLNGTITINDTAGGGATFTVKFPLK 430


>gi|268590725|ref|ZP_06124946.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
 gi|291313496|gb|EFE53949.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
          Length = 781

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 117/231 (50%), Gaps = 10/231 (4%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    EAL  A   K +F+  +S+ELR+PL  I+G + +L  +    L S+QS Y
Sbjct: 264 RDITERKRYQEALESASREKTTFISTISHELRTPLNGIVGLSRILLDT---DLTSEQSSY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S+  L N+ NDI+++  ++   ++L+   I L++ +N+++      +    ++ 
Sbjct: 321 LKTIHVSAVTLGNIFNDIIEMDKIERRKVQLDNQPITLSEFVNDLENLSGLLVQPKGLKF 380

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            + ++     + + D  RL QI   ++ NA+ F+ KG   +           F V+++G 
Sbjct: 381 VMDVAPALPKTVLTDGTRLRQILWNLIGNAVKFTQKGEVKLSIWQEAENKLFFRVQDSGI 440

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISS 776
            IP+     +F  +  V+++  G+   G G+GLS+        GG + + S
Sbjct: 441 GIPKGELDKIFAMYYQVTDSAGGKPATGTGIGLSVSRRLAQNMGGDIQVES 491


>gi|149912859|ref|ZP_01901393.1| hypothetical protein RAZWK3B_02685 [Roseobacter sp. AzwK-3b]
 gi|149813265|gb|EDM73091.1| hypothetical protein RAZWK3B_02685 [Roseobacter sp. AzwK-3b]
          Length = 506

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 148/344 (43%), Gaps = 22/344 (6%)

Query: 213 GDILWANISYKKNTETEGIVF---QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
           G ++W N+++    E E       +K + E      + I  +  +  A +  + E  ST 
Sbjct: 168 GRVIWQNLAFSNLPEDERARLLPDRKIVPECEGSLIDRISFKNAADGATQ--WYEVNSTR 225

Query: 270 EHGNNKSY--KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
             G+   Y   I +V+        A  V +E      LT T+    NLT  +A+FD+ + 
Sbjct: 226 VGGDLFHYVTDITKVIQ-------AETVRREFV--QTLTKTFA---NLTTGLAVFDRQQR 273

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           L   N +FV+L  +   FL+  P    + + LR    +PE  N+  W+  I  +  ++  
Sbjct: 274 LALFNPAFVDLTGLSAEFLSARPDLIGVFDNLRDRQIMPEPKNYANWRTRISEIVATASD 333

Query: 388 --HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             ++DTW LP+G T  V    +P G   ++FE+++ ++ L  ++ T + ++   +D L +
Sbjct: 334 GLYQDTWSLPSGLTYRVTGRPHPDGAVAFLFEDISDEIALTRRFRTQLNLRQAVLDQLPD 393

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            +AV  P+  + L N     +   + +       +  + A C  +  +   W   A  + 
Sbjct: 394 AIAVISPNNLLLLCNKRCSDVLGIDPDSSLAELSVPALIAICREHIPDDTFWPQ-AETLL 452

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           S  +  + L+  L   +   +   + PL     ML+  + T +V
Sbjct: 453 SGHNLTEPLETVLYSRAGHPMRCRLSPLTGGSAMLSMADCTATV 496


>gi|315644230|ref|ZP_07897400.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315280605|gb|EFU43894.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 460

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 123/242 (50%), Gaps = 13/242 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            ++  + + + ++++  FV +VS+E++SPL +I GF+  L+T +L     +Q  Y+  I 
Sbjct: 225 FSQMAKGIAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLS--EEQQQHYLSIIE 282

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS- 673
           A S  +  L   +L LA++D     L  ST    D+  ++KQ +     E + R K ++ 
Sbjct: 283 AESRRMSQLSKQLLMLASLDKEENILEKSTF---DVAEQIKQVLFHT--EWSWRSKELTM 337

Query: 674 DGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSI 730
           D  L S     D+Q L Q+++ +++N++ F++    + L+   +DN      + + G  I
Sbjct: 338 DMSLPSTYIHGDQQLLHQVWTNLMTNSIKFTAPEGIISLRITGQDNPSCSIEISDTGIGI 397

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +    +F+RF  V  A        GLGL+I +  + +HGG + ++S     TT    +
Sbjct: 398 PPEHLPHIFDRFYRVDEARDRSEGSSGLGLAITQKIVQMHGGRIEVTSQPGEGTTFTVTL 457

Query: 789 PS 790
           P+
Sbjct: 458 PT 459


>gi|300869313|ref|ZP_07113904.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332690|emb|CBN59102.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 887

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 124/240 (51%), Gaps = 11/240 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E +  A++ K+ F+ ++S+ELRSPL  I+GF+ L+   +  +L  +Q +    I  S   
Sbjct: 416 EKVEDANQAKSLFIANMSHELRSPLNAILGFSQLM--VRATNLPPEQHENAGIIYRSGDY 473

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+N++LDL+ ++AG   LN     L+ LL++++  +        +++       +  
Sbjct: 474 LLTLINNVLDLSKIEAGKTILNPKDFDLHLLLDDLEDMLHLSATNAGLKLVFKRHENVPR 533

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI---FSVKNNGSSIPED 733
           ++  D+ +L Q+   +LSNA+ F+S+G     + +  R+  D     F V++ G  I   
Sbjct: 534 YICTDQVKLRQVLINLLSNAIKFTSEGQITLSVFQGDRETTDIFNLHFRVQDTGVGIAAA 593

Query: 734 MCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F+ F S A  G+  + G GLGL+I   F+ L GG +S+ S     TT    I +K
Sbjct: 594 ELPKLFDTF-SQAQAGKEMQEGTGLGLAISRKFVQLMGGDISVESKLGKGTTFQFNIQAK 652


>gi|229109017|ref|ZP_04238618.1| hypothetical protein bcere0018_12900 [Bacillus cereus Rock1-15]
 gi|228674486|gb|EEL29729.1| hypothetical protein bcere0018_12900 [Bacillus cereus Rock1-15]
          Length = 604

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 141/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ + 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNID 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ IPE
Sbjct: 482 ADPSI-LVKANRSRIEQVVVNLLSNAIRYTPEGEKIQVSIIEAEDTVKVEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|220930051|ref|YP_002506960.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|220000379|gb|ACL76980.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 362

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 114/230 (49%), Gaps = 8/230 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER + E+    +  DE+ N    ++S++LR+PLT+IIG+  ++   K         QY  
Sbjct: 125 ERLIAEEKRWEKSKDEMIN----NISHDLRTPLTSIIGYLQMIIECKQNDNEDYMMQYAH 180

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              +    L  LV+ + +   V +   KL+ + I + +L+ +V   +   + E NI  ++
Sbjct: 181 VAYSKCEQLKLLVDQLFEFTNVSSKEYKLDITKIDVAELVRQVVAGLMPILQEKNICCRI 240

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              D K+ +  AD   + ++F  ++SNA+ +S  G  + +   ++       V N G +I
Sbjct: 241 DFPDEKVYT-SADGTLIARVFDNLISNAVKYSPNGGNIDVMLRKEPFGAFVRVTNYGITI 299

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           PE     +F+RF  V  +      GVGLGL+IV+S +  H G + + S+D
Sbjct: 300 PEQNLPYIFDRFYRVDKSRSNSCAGVGLGLAIVKSIVEKHKGEIHVKSND 349


>gi|260061561|ref|YP_003194641.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Robiginitalea biformata
           HTCC2501]
 gi|88785693|gb|EAR16862.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Robiginitalea biformata
           HTCC2501]
          Length = 846

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 16/233 (6%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +   +  VS++LRSPL  I G+ +LL  ++L   + KQ+ Y   + ++S  L  L ND+L
Sbjct: 321 RERLIASVSHDLRSPLNTIQGYGELLGQTEL---SEKQAAYTAAMDSASRYLERLANDLL 377

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D + ++AG +K      +  +L+ E   SI        + +++  +  L +  + D  R+
Sbjct: 378 DFSRLEAGQLKTEELPFIPAELIRETCHSIEAANRTGRVALELDLERVLDTPCLGDSFRV 437

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNG--------DFIFSVKNNGSSIPEDMCKSVF 739
            QI S +L NA  F+ +G+  +    R +G        +    V + G  I E+  +S+F
Sbjct: 438 RQILSNLLGNAYKFTREGTITVSGRLRPSGNGGREGLRELEIRVSDTGMGIREENLESIF 497

Query: 740 NRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F    ++A  GQ +G GLGL+I      L GG ++  S+    +T   R+P
Sbjct: 498 QEFTQAEADAGAGQ-KGYGLGLTISRKLSELLGGSLTARSTWGRGSTFTLRVP 549


>gi|83859608|ref|ZP_00953128.1| PAS [Oceanicaulis alexandrii HTCC2633]
 gi|83851967|gb|EAP89821.1| PAS [Oceanicaulis alexandrii HTCC2633]
          Length = 597

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 34/278 (12%)

Query: 538 TML--TFVN-VTDSVRAERALTEKN------------------EALRKADEIKNS---FV 573
           TML  T+ N + DSV A  AL E N                  +A RKA+E   S    +
Sbjct: 166 TMLAKTYANTLLDSVAANIALEEANKKTLEQAAALARLAEHNDQAARKAEETARSSAVLL 225

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELRSPL  ++G   LL  ++L   + +QS  V  +  S   L  L+N +L+++ +
Sbjct: 226 ANMSHELRSPLNGVLGMGQLLDKTRL---SDEQSLMVSRLLESGEKLEGLINTVLEVSRI 282

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           DAG M+L    I   D  + +++  A      NI   V  DG    +  AD  RL+ +  
Sbjct: 283 DAGRMELILEDITACDFADRLRREHAPHAAAKNISFDVEFDGDGARALRADGGRLMHMCR 342

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNA-- 746
            +  NA+ F+ +G   +    R++   +     SV + GS +PE   + +FN    +A  
Sbjct: 343 ILAHNAIHFTDEGGVTVNLTMREDQPGLSALRISVIDTGSGVPESSREQLFNAMGKDAID 402

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
              ++ G GLGL +V     +  G V  + ++EG  ++
Sbjct: 403 DNIKQAGTGLGLHLVRKLAEMMHGEVGYAPAEEGSGSV 440


>gi|226943669|ref|YP_002798742.1| heavy metal sensor histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
 gi|226718596|gb|ACO77767.1| heavy metal sensor histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
          Length = 431

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 14/215 (6%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS---TILLNLVND 626
           ++F   +++ELR+PL+N+     L +T    S      +Y E + ++      L  +V D
Sbjct: 215 SAFSADIAHELRTPLSNL-----LTQTQVTLSRPRALEEYREALHSNLEELQRLAQMVAD 269

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +L LA  D G++  N   + L   ++ +    A    +  IR++   D +L   +ADR  
Sbjct: 270 MLLLAKADHGLLLPNREPLALGAEIDTLLDYFAPLAEDAGIRLERRGDARL---MADRGM 326

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VS 744
           LL+  S +L NA+ F+  G  + L+ +   G     V N+G +IP +    +F+RF  V 
Sbjct: 327 LLRALSNLLDNALRFTPAGGEIRLELSGTPGRLRLEVGNSGPAIPPEQLPKLFDRFYRVD 386

Query: 745 NAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            A R G     GLGL++  S +  HGG +   SS+
Sbjct: 387 PARREGDGEHAGLGLALARSIVRAHGGEIRCESSE 421


>gi|332981485|ref|YP_004462926.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699163|gb|AEE96104.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 473

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 13/244 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  A++++ E+L KA   ++ FV + S+EL++PL++I     +L  S +   N+    Y 
Sbjct: 234 AFNAMSQRVESLDKA---RSEFVANASHELKTPLSSI----KVLAQSLVQDPNADIKVYK 286

Query: 611 EY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           E+   I +    + N++ND+L L  +D     + Y+ + L  L+NEV + +       NI
Sbjct: 287 EFMYDIDSEIDRMNNVINDLLTLVQLDKDKPDITYTDVDLERLINEVLKVLRPLAAAKNI 346

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++    +  + S   D  +L Q+   I+ NA+ ++ +G  V +   + +G+ +  V +NG
Sbjct: 347 KLNYRCEEGV-SIRGDAPKLKQMLINIIDNALKYTPEGGKVDVCLRKKDGEALIEVVDNG 405

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +F+RF  V  A      G GLGLSI +    LH G +++ SS+   T  +
Sbjct: 406 MGIPRADLPYIFDRFYRVDKARSRATGGTGLGLSIAQKIAYLHKGTINVESSEGEGTRFS 465

Query: 786 CRIP 789
            ++P
Sbjct: 466 IKLP 469


>gi|257468274|ref|ZP_05632370.1| sensor protein barA [Fusobacterium ulcerans ATCC 49185]
 gi|317062552|ref|ZP_07927037.1| GAF sensor hybrid histidine kinase [Fusobacterium ulcerans ATCC
           49185]
 gi|313688228|gb|EFS25063.1| GAF sensor hybrid histidine kinase [Fusobacterium ulcerans ATCC
           49185]
          Length = 633

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 10/246 (4%)

Query: 547 DSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLN 603
           +S+ A R   L    E    A+  KN F+  +S+E+R+PLT IIG++ LL K      L 
Sbjct: 141 ESIVATRTKELIISKEIAESANRAKNEFLAKISHEMRTPLTPIIGYSRLLLKEFPDSPLK 200

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K    ++ I  S   LLN  N++LD + ++AG + LNY +  + +L  ++    +T   
Sbjct: 201 DK----LDIIHTSGVKLLNFTNELLDFSKIEAGKVDLNYESFNIKELFQDIYHEHSTLAS 256

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             NI+ K+          +D+ ++ +I   ++ NA+ ++ KG  V+ +    +    F+V
Sbjct: 257 SKNIKFKIEFSANEVIIYSDKMKIYEIAKNLIHNAIKYTEKG-FVLCEVDIKDSYLSFNV 315

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            ++G  I +     +F  F       Q  G GLGLSI +  + +  G + + S     TT
Sbjct: 316 YDSGIGISKTNINYIFESF--GQINKQSSGAGLGLSITKKLVEILNGTIEVESKVLIGTT 373

Query: 784 INCRIP 789
              +IP
Sbjct: 374 FKVKIP 379


>gi|228918077|ref|ZP_04081605.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930471|ref|ZP_04093471.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936745|ref|ZP_04099536.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228949187|ref|ZP_04111455.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124968|ref|ZP_04254142.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228658469|gb|EEL14135.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228810470|gb|EEM56823.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228822954|gb|EEM68795.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829190|gb|EEM74827.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841557|gb|EEM86673.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 588

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 419

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 420 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 477

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|254393223|ref|ZP_05008377.1| signal transduction histidine kinase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706864|gb|EDY52676.1| signal transduction histidine kinase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 772

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 24/263 (9%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L E+ E L      K  F+ ++S+EL +PL +++    LL  +   +L+ +Q +Y 
Sbjct: 315 ARQVLEERTEQLILEMRYKTEFLANMSHELCTPLNSLLLLAKLLMDNDARNLSPRQVEYA 374

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  + + LL+L+N+ILDL+T +AG M ++ S      L + +    +    E  I + 
Sbjct: 375 ETIHGAGSDLLHLINNILDLSTAEAGKMNVSTSQAAPAQLADRIGAVFSPLAAEKGIGLS 434

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA--------------- 713
           V +  +L  +F+ D QRLLQ+   ++SNA+ F+  G   V +  A               
Sbjct: 435 VRASPELPPAFLTDEQRLLQVLRNLVSNAIKFTETGGVEVTIHPAGTDVPPTIRRQLVEA 494

Query: 714 -----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                 D G   F+V++ G  I     + +F+ F     +  R+  G GLGL+I      
Sbjct: 495 GSLSDPDAGVIAFAVRDTGIGIAASQVEVIFDAFKQADRKTTRKYGGTGLGLTISREIAR 554

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L GG +   S     +T    +P
Sbjct: 555 LLGGEIHAQSEPGHGSTFTLYLP 577


>gi|197303867|ref|ZP_03168902.1| hypothetical protein RUMLAC_02605 [Ruminococcus lactaris ATCC
           29176]
 gi|197297050|gb|EDY31615.1| hypothetical protein RUMLAC_02605 [Ruminococcus lactaris ATCC
           29176]
          Length = 450

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 8/242 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEY 612
           A+  +N+       ++  F  +VS+EL++PLT+I G+ +++     G + ++    + + 
Sbjct: 206 AIDRQNKEKEAVANMRKEFSANVSHELKTPLTSISGYAEIMMN---GLVRAEDIPGFSKR 262

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L+ LV DI+ L+ +D   ++L    + L +L  E+   ++ +  E  I + + 
Sbjct: 263 IYKEARRLITLVEDIIKLSKLDEESVELEKEDVELYELTREIVSRLSPQCSEKKISVALS 322

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +      +  RQ L ++   I  NA+ ++  G +V +           SV + G  IPE
Sbjct: 323 GEPVFCHGI--RQILDEMIYNITENAIKYNRDGGSVSVWVGNTLDGPKISVSDTGIGIPE 380

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF  V  +H  +R G GLGLSIV+    LHG  V+++S     T I  R P 
Sbjct: 381 EHQERIFERFYRVDKSHSKERGGTGLGLSIVKHGAILHGAKVTVNSEPGKGTKIEIRFPK 440

Query: 791 KE 792
           +E
Sbjct: 441 EE 442


>gi|220911015|ref|YP_002486324.1| multi-sensor signal transduction histidine kinase [Arthrobacter
           chlorophenolicus A6]
 gi|219857893|gb|ACL38235.1| multi-sensor signal transduction histidine kinase [Arthrobacter
           chlorophenolicus A6]
          Length = 563

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 11/233 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D+ K  F+  V++ELR+PLT+I+ + D+++ S     +++  Q ++ +  ++  L  L+ 
Sbjct: 324 DKAKTDFLATVNHELRTPLTSIMAYLDMIQESTEQPGSAEIHQMLDIVVRNTERLRTLIE 383

Query: 626 DILDLA--TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           D+L ++   +D  +M L  + + L   L+ V  ++       N+ I +         +AD
Sbjct: 384 DMLSVSRNGLDDTLMHL--TPVRLGHTLDLVASALRPLAKLQNVTIALDPVPDDPEILAD 441

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDF-IFSVKNNGSSIPEDMCKSV 738
             +L Q+F+ ++SNA+ F+  G  + +     AA D   +    V +NG  I  D    V
Sbjct: 442 EIQLQQVFTNLVSNAIKFTPSGGRIEVGSESHAAADGSRWATVRVADNGIGISSDEIDHV 501

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF   SNA  G   G GLGL+I +  +  HGG + ++S+    TT+   +P
Sbjct: 502 FTRFYRASNAMSGAIPGTGLGLAITKDIVARHGGTIDVASTLGAGTTVTVSLP 554


>gi|226942490|ref|YP_002797563.1| hybrid sensory histidine protein kinase [Azotobacter vinelandii DJ]
 gi|226717417|gb|ACO76588.1| hybrid sensory histidine protein kinase [Azotobacter vinelandii DJ]
          Length = 957

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 1/237 (0%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T V++    R E  L       + A + K+ F+  +S+ELR+PL  I GF  LL+     
Sbjct: 574 THVDIDTLKRTEADLRLAIGEAQAASQAKSRFISSISHELRTPLNAIYGFAQLLRLGYEA 633

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +++  Y++ +  +S  L  LV+D+LD + +      L   ++ +  L+ E  + +  
Sbjct: 634 RGETQEVAYLDELLRASRHLNQLVDDVLDWSNLQTAKFSLEMQSVEVAGLMAECAEMVRL 693

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +    +R+ +    K     AD +RL Q+   +LSNA+ ++S    + L    ++G   
Sbjct: 694 DVETRGLRLDLEPPDKGLLVRADPRRLRQVLLNLLSNAIKYNSPAGRIALTHQAESGRIR 753

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
             V++ G  I E     +F  F          +G G+GLS+   F  L GG + +SS
Sbjct: 754 LIVEDTGPGIDESRQVQLFEPFQRLGRENSTIQGTGIGLSLCRQFAVLMGGRMGMSS 810


>gi|94972065|ref|YP_594105.1| periplasmic sensor signal transduction histidine kinase
           [Deinococcus geothermalis DSM 11300]
 gi|94554116|gb|ABF44031.1| periplasmic sensor signal transduction histidine kinase
           [Deinococcus geothermalis DSM 11300]
          Length = 354

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 110/218 (50%), Gaps = 8/218 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL + ++ +   + +V++ELR+PL  + G+ D ++   +   ++ QS     IS     +
Sbjct: 138 ALEQVEQGRVELIGNVAHELRAPLAALRGYADAMQDGVMTPEHAAQS-----ISREIGAM 192

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+  ++ V+AG ++L+   I    LL  +++  AT   +  ++++ I+D  L   
Sbjct: 193 DRLVRDLSLVSRVEAGKVELHLKAIDPQGLLQIMRERFATPFEDKGVQLQ-ITDAVLPQI 251

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD +R LQ+ + +LSNA+  +  G  V +    +     F+V++ G+ IP +    +F 
Sbjct: 252 KADEERTLQVLTNLLSNALRHTPAGGKVSVTVQTEAALLKFNVQDTGTGIPAEHLPRIFE 311

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           RF     A      G G+GL+I +  +   GG + + S
Sbjct: 312 RFYRADPARSRSEGGSGVGLTIAKGLVEAMGGEMWVVS 349


>gi|172058696|ref|YP_001815156.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991217|gb|ACB62139.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 454

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 10/226 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   E  +A+ K+D  + +FV +VS+E +SPLT I G+ + L+ S      +K+   ++ 
Sbjct: 223 RRFDEMAQAVAKSDAERKAFVANVSHEFQSPLTTIRGYAEQLERSA----ETKERLKLQT 278

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I   +T +  L   +L LA +D G   L    I L   +    ++++ ++ E  + + + 
Sbjct: 279 IGQEATRMAELTRQLLTLARLDEG-RPLRRQPIPLVQSIQTTLETLSYQLDERGVAVALE 337

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            SD  +   +AD   L QIF  ++ NA+  S++G  + ++   +    I  +K+ G  + 
Sbjct: 338 ASDDPV--ILADELALEQIFQNLIRNALHVSAEGDLITIQVDTEADSVIVRIKDQGPGMT 395

Query: 732 EDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           E++    F RF   +A RG   G GLGL+IV+  +N   G + I S
Sbjct: 396 EEVIAHAFERFYQGDASRGTS-GTGLGLAIVKETMNQLEGQIRIES 440


>gi|332531837|ref|ZP_08407722.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038813|gb|EGI75255.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 1046

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT   E   KA++ K  FV ++S+ELR+P+  I+G   LL++S+L    S+Q  Y +   
Sbjct: 353 LTSAMEQTDKANKTKIDFVANMSHELRTPMNGILGMLQLLQSSELP---SRQKHYADKAF 409

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+  LL ++N+ILD + +++  ++L      L+ +++ V+   +T   +  + +  I  
Sbjct: 410 SSAQNLLQILNNILDFSKLESEKVQLEQIPFTLHTIVSNVQNLFSTNAKQKGLLLNFILH 469

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSS 729
              G   + D   L QI +  + NA+ F+  G  ++I++A   +   I   FS+K+ G  
Sbjct: 470 VDAGLELIGDPMHLSQIINNCVGNAIKFTEHGEISLIIEATSQHEKTINLRFSIKDTGIG 529

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           + E+  K +F  F        R+  G GLGL+I +    L GG + + S+
Sbjct: 530 MTEEQSKIIFQSFSQGDSSTTRKYGGTGLGLTISKQLTKLLGGDIQVRST 579


>gi|317471229|ref|ZP_07930594.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901276|gb|EFV23225.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 1090

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 134/276 (48%), Gaps = 20/276 (7%)

Query: 532 PLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           P  N +  +     TD  R E     +AL    +    A++ K  F+ ++S+++R+P+  
Sbjct: 536 PYSNDKLAILISRRTDEQRYEEEQQRQALQTALDNANAANKAKGQFLSNMSHDIRTPMNA 595

Query: 587 IIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           IIG + +        L+ ++   + +  I+ S   LL+L+NDILD++ +++G + L    
Sbjct: 596 IIGMSAIAS----AHLDDRERIMECLGKINLSGKHLLSLINDILDMSKIESGKLSLRKEP 651

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             L +L+ +  + I  +     IR+KV +   K  + + D  R+ Q+   ILSNA+ ++ 
Sbjct: 652 FNLAELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVCINILSNAVKYTP 711

Query: 704 KGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           +G  + ++        R+  +FIF   + G  +     K +F+ F   S++   +  G G
Sbjct: 712 EGGKIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERASDSTSSKMTGTG 771

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LG++I ++ I+L  G + + SS    +     +P K
Sbjct: 772 LGMAITKNIIDLMSGDIQVESSPGKGSVFTVTLPLK 807


>gi|298244389|ref|ZP_06968195.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551870|gb|EFH85735.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 745

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 5/233 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N A ++ +  K +F+   S+EL++PLT I     L +   L     + +  +        
Sbjct: 510 NSARKELELRKENFLSMASHELKTPLTAIKMRLQLARVRLLKQGLGEAATMLSRAEEPVH 569

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +L  L+ ++LD++ + AG +   Y  + +  L+ E+ ++       + I   V+     G
Sbjct: 570 LLDRLIGELLDVSKLQAGKLDYLYEPVDMEALVYEIAETTQLMSTTHTI---VVHGSAPG 626

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           + + D+ RL Q+F  ++SNA+ +S   +TV +     +     SV++ G  IP+   + +
Sbjct: 627 TVIGDKGRLEQVFINLISNAIAYSPDANTVDIDLHATSEAVTVSVRDYGIGIPQGQREKI 686

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF       QR   G+G+GL+I +  +  HGG +++ S +   +T    +P
Sbjct: 687 FERFYRAFDLSQRAVPGLGMGLTIAQEIVTQHGGTITVQSEEGKGSTFQVTLP 739


>gi|239945496|ref|ZP_04697433.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239991961|ref|ZP_04712625.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 11379]
 gi|291448953|ref|ZP_06588343.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
           15998]
 gi|291351900|gb|EFE78804.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
           15998]
          Length = 514

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER++ E    LR+A+     F   VS+ELR+PL  ++  T++L       L++  +Q V 
Sbjct: 274 ERSVGE----LREAEARARRFASDVSHELRTPLAGMLAVTEVLDQDAH-RLDADTAQAVR 328

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +SA +  L  LV D+++++  DA   +LN   I   D+   +++++ T+   ++ RI+ 
Sbjct: 329 LVSAETGKLAVLVEDLMEISRFDARAAELNSDEI---DVAEAIRKTLQTRHWADDERIRT 385

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIF--SVKNNGS 728
                + + + D +R   + + ++ NA+       TV+L+  A  +G  +    V + G 
Sbjct: 386 ELPAGVRARL-DPRRFDVVVANLVGNALRHGGTPVTVLLRTEASSSGTLVLVVEVADRGP 444

Query: 729 SIPEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IP      +F+RF  ++A R +  G GLGL+I    +NLHGG +   +   G       
Sbjct: 445 GIPAAALPHIFDRFYKADAARTRSPGSGLGLAITLENVNLHGGTIRAGNLPGGGAVFTVE 504

Query: 788 IP 789
           IP
Sbjct: 505 IP 506


>gi|229149760|ref|ZP_04277990.1| hypothetical protein bcere0011_13180 [Bacillus cereus m1550]
 gi|228633791|gb|EEK90390.1| hypothetical protein bcere0011_13180 [Bacillus cereus m1550]
          Length = 604

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 141/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ + 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNID 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ IPE
Sbjct: 482 ADSSI-LVKANRSRIEQVVVNLLSNAIRYTPEGEKIQVSIIEAEDTVKVEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|77359088|ref|YP_338663.1| hypothetical protein PSHAa0111 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76873999|emb|CAI85220.1| putative membrane bound sensor or esterase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 942

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 125/236 (52%), Gaps = 12/236 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASST 618
           + LR+A+++K+ F+ ++S+E+R+PLT I+  TD L     G  + +Q Q  ++ I   S 
Sbjct: 469 QELREANDVKSQFLANISHEIRTPLTAILSQTDDLIN---GLYDPEQLQDELKVIQRQSE 525

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L +L+ND+LDL+ ++A  ++L+ S   +  +LN++    + +    N+ +  + D +LG
Sbjct: 526 HLKSLINDVLDLSKIEANRLELSISCFDIVQVLNDIHGMFSVQAKAKNLSL--VFDNQLG 583

Query: 679 SFVADR---QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
             +  R    R+ QI   + +NA+ F+  G   I+    + G  + +VK+ G  +     
Sbjct: 584 DELYTRLDLTRVKQILINLCANAIKFTHSGQVTIVANNTEQG-LVLTVKDTGIGMNTAQL 642

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           K +F  F    +   RR  G GLGLS+ +    + GG++S+ S  +  +  +  +P
Sbjct: 643 KLIFECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQSEFKKGSQFSFFVP 698


>gi|121997445|ref|YP_001002232.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121588850|gb|ABM61430.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 790

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 22/289 (7%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           W L A  +   DD      G + L S          +P        + +  ++RA++   
Sbjct: 171 WGLAATGVIGVDDRVNPATGPIILAS----------IPWTLGWTYGLAMAANLRAQQESE 220

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                  +A+  K+ F+ ++++E+R+P+  ++G T LL  +    L+++Q  ++  I  S
Sbjct: 221 RARAEAERANRAKSEFLANMNHEIRTPMNAVLGRTQLLLDT---DLDAQQLDHLGKIHNS 277

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S +LL ++NDILD++ +++G +++      L +++++V    +    E  + +       
Sbjct: 278 SKMLLGIINDILDISKIESGKLEIEPHRFDLREVIDQVDTLFSAAASEKGLDVTYDIQPD 337

Query: 677 LGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSS 729
           L    + D  RL Q+ S +LSNA+ F+ +G TV L      +A  D     F V+++G  
Sbjct: 338 LPRMLIGDSLRLTQVLSNLLSNAIKFTPRGGTVELNLHEVGEADDDAAHVRFQVRDSGIG 397

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  +  K +F  F     +   Q  G GLGL I    +   GG + ++S
Sbjct: 398 MDAEQLKRIFQPFEQADASTTRQYGGTGLGLEIGRRLVTNMGGRLEVTS 446


>gi|269960017|ref|ZP_06174394.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835316|gb|EEZ89398.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1200

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 124/254 (48%), Gaps = 7/254 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M  F ++T+  + E AL   N    +A E +  F+  +S+ELR+P+  ++G  +LL+   
Sbjct: 638 MTVFDDITELKKKECALKASNLKAMQAIEAREHFLAVISHELRTPIAAMLGLMELLE-QD 696

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L    SK+      +SA    L   VNDILD + VDA  ++L+  +  + + L    +S 
Sbjct: 697 LDRPESKELLKSAMLSAERLQL--HVNDILDFSKVDANQLQLDVHSGNVYEELGSSLRSF 754

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              + +  +  +V       + V  D  R+ QI + +LSNA+ F+ KG   +      N 
Sbjct: 755 EKAVEQKALAFEVNWQPTPYALVNLDWLRVNQIINNLLSNAVKFTDKGKISVNIHVCAN- 813

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           + +FSV + G  + +    ++F  FV       RR  G GLG+SIV+  +++  G + +S
Sbjct: 814 ELVFSVHDTGCGMSKAQLDALFQPFVQGDKSISRRFGGTGLGMSIVKKLVDIMTGTIEVS 873

Query: 776 SSDEGVTTINCRIP 789
           S     T I  R+P
Sbjct: 874 SKQGKGTEITVRLP 887


>gi|253686706|ref|YP_003015896.1| multi-sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753284|gb|ACT11360.1| multi-sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 789

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 34/247 (13%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   L+ +Q +Y
Sbjct: 264 RDITERKRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLDTQ---LDPEQQKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV----------LNDLLNEVKQSIA 659
           ++ I  S+  L N+ ND++++   +   ++L+   I           L  LL E K    
Sbjct: 321 LKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLENLGGLLAEPKGLKL 380

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAAR 714
                  +  KVI+DG          RL QI   +LSNA+ F+ KG       ++++   
Sbjct: 381 IMDQHYPLPQKVITDGT---------RLRQILWNLLSNAVKFTPKGENGEKGEIVVRVWH 431

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGG 770
           + GD + F V+++G  IP D  + +F  +  V + H G+   G G+GL++ +      GG
Sbjct: 432 EKGDRLSFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGTGIGLAVSKRLAQNMGG 491

Query: 771 HVSISSS 777
            + +SS+
Sbjct: 492 DIQVSST 498


>gi|268317957|ref|YP_003291676.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335491|gb|ACY49288.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 628

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 11/248 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD V AE+AL   NE L++ +     F    S++L+ PL  +  F +LLK      L+
Sbjct: 364 DVTDRVEAEQALARSNETLQQRNRELQDFAYIASHDLQEPLRKVRAFAELLKEEYESVLD 423

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y++ +  ++  +  L+ D+L  + V        +  + L+ +L +V   +  ++ 
Sbjct: 424 DEGRYYLDRMQDAAQRMSRLIEDLLTFSRVTT--QGRPFERVDLHAILEQVLADLEVRIA 481

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD----NG 717
           E + ++ V  +G      AD  ++ Q+   ++ NA+ F     T  V L+A  +      
Sbjct: 482 ETDAQVHV--EGHWPVVEADPTQMRQLLQNLIGNALKFHHPERTPEVWLRARLEETPAGT 539

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI-SS 776
             +  V++NG    E     +F+ F     RG+  G G+GL+I    +  H G ++  S 
Sbjct: 540 QCVIEVQDNGIGFDEKYLDRIFSPFQRLHGRGRYAGTGMGLAICRRIVERHHGQLTARSR 599

Query: 777 SDEGVTTI 784
            DEG T I
Sbjct: 600 PDEGATFI 607


>gi|255034195|ref|YP_003084816.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254946951|gb|ACT91651.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 577

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 115/214 (53%), Gaps = 1/214 (0%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++ D  K +F+ +VS+EL++P+++I    DLL+  ++G  N +Q   ++ I   +  LL 
Sbjct: 349 KELDFAKTNFIANVSHELKTPISSIKITLDLLRNERVGETNEEQRGLIDSIREDADRLLK 408

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +  ++L++  V++G ++LN +     ++++    +  T+    +IR++   +G     +A
Sbjct: 409 ITGELLNITQVESGKIQLNIAAASPREMVHYAIAANETQAANRDIRLETEENGVHSDVLA 468

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D ++   + + ++SNA+ +S   ST+ +  + D+     +V +NG  I ++    +F+R+
Sbjct: 469 DTEKTAWVLTNLVSNAIRYSYDHSTIRISLSEDDQCVRIAVTDNGQGISQEYKDKIFDRY 528

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                   + G GLGL+I   F+    G +++ S
Sbjct: 529 F-RVPGSTKEGTGLGLAISREFMEAQEGTLTVES 561


>gi|226324179|ref|ZP_03799697.1| hypothetical protein COPCOM_01958 [Coprococcus comes ATCC 27758]
 gi|225207728|gb|EEG90082.1| hypothetical protein COPCOM_01958 [Coprococcus comes ATCC 27758]
          Length = 391

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 124/237 (52%), Gaps = 12/237 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E   K+D      + ++S++L++P+T I G+ + ++   +     K  +Y+  I 
Sbjct: 145 LRDNAEEKLKSDRESKELISNISHDLKTPITAIKGYVEGIRDG-VADTPEKMEKYIGTIY 203

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK---- 670
             +  +  L+N++   A +D   +  N++ + +ND  N+  + I  ++   N+       
Sbjct: 204 NKANEMDTLINELTLYAKIDTNRIPYNFAPLSVNDYFNDCAEDIEMELDSKNVEFGYFNY 263

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
           V  D K+   +AD ++L ++ + I+SN++ +  +   +I    +D GDFI   +++NG  
Sbjct: 264 VEGDQKI---IADPEQLKRVINNIVSNSLKYMEREHGLINLRVKDVGDFIQVELEDNGKG 320

Query: 730 IPEDMCKSVFNRFV-SNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           I      ++F+RF  ++A R   + G G+GLSIV+  I  HGG +  ++S EGV T+
Sbjct: 321 IAAKDLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEDHGGKIW-ATSREGVGTV 376


>gi|71906612|ref|YP_284199.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846233|gb|AAZ45729.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1064

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 9/215 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  I+G   LL+ S    LN++Q   V  I  ++  LL+++ND+L
Sbjct: 595 KSTFLANMSHEIRTPMNAIMGLGYLLEQS---PLNTEQQDKVRKIHGAAKHLLSILNDVL 651

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ ++AG M L+       + L  V   I        + +   +D      + D  RL 
Sbjct: 652 DLSKIEAGKMTLDRCAYSPAEELTAVASMIGEDAQRKGLTVITETDDLPPFTIGDPTRLR 711

Query: 689 QIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           Q       NA+ F+  GS      I +   DN    FSV + G  I  ++   +F  F  
Sbjct: 712 QAILNFAGNAVKFTEHGSIRLRGEIAETQPDNYLLRFSVSDTGPGIAPELQARLFTAFEQ 771

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
                 RR  G GLGL+I     +L GG   + S+
Sbjct: 772 ADSSSTRRLGGTGLGLAISRHLSHLMGGDAGVDST 806


>gi|68535407|ref|YP_250112.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium
           K411]
 gi|68263006|emb|CAI36494.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium
           K411]
          Length = 536

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 122/260 (46%), Gaps = 20/260 (7%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEA-LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           AQ    FV +  S R  R    ++EA +R+       F+   S+ELR+PLT++ G+ +L 
Sbjct: 294 AQIQTAFVAIGASERQAR----RSEASMRR-------FIGDASHELRTPLTSVRGYAELY 342

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           ++             ++ IS  +  +  LV D+L L  +D G   L  + + + +L+ E 
Sbjct: 343 QSGA----TDDAPMVIDRISEEAGRMSLLVEDLLALVRMDEG-RPLAKNRVDMLELVLET 397

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +S         +++ V   G +   + D  RL Q+   +++NA+  + + + V L+  +
Sbjct: 398 AESARAGFPNRTVQV-VNETGDVPIVIGDVNRLHQVLGNLVTNALRHAGEDAEVKLRLDK 456

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            +G  I  V++NG  IP +    +F RF        R   G GLGLSIV+  +  HGG V
Sbjct: 457 RDGHVIVDVEDNGRGIPAEDVPHLFERFYRPDVSRSRASGGSGLGLSIVKGLVEAHGGTV 516

Query: 773 SISSSDEGVTTINCRIPSKE 792
           S+ S +   T     +P  E
Sbjct: 517 SVDSEEGQGTRFRIDLPEAE 536


>gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 675

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 18/252 (7%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T   R ++ L E   A   A   K+ F+ ++S+E+R+P+T I+GF+DLL   +     
Sbjct: 246 DITRQRRDQQELEEAKRAAESASHAKDEFLANMSHEIRTPITAILGFSDLLIHDQ----- 300

Query: 604 SKQSQYVEYISASSTI------LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             Q+++  +  ++ T+      LL+L+ND+LDL+ ++AG + +        +++ +V Q 
Sbjct: 301 RLQNEFPNWFESAQTVYRNGEHLLSLINDVLDLSKIEAGRLLIESIRCSPLEIVRDVCQL 360

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++ K  E ++ + V     +  + V D  R+ Q+   ++ NA+ F+ +GS  I      +
Sbjct: 361 MSLKASEKDLTLDVSFRTDIPVTAVTDPTRIKQVLINLVGNAVKFTPRGSVQITVDIHSS 420

Query: 717 GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           G        V + G  +       +F  F        RR  G GLGL I +  +   GG 
Sbjct: 421 GHATMLAVEVTDTGIGMTSAQIDRLFQPFTQADASTTRRFGGTGLGLVISKRIVEALGGQ 480

Query: 772 VS-ISSSDEGVT 782
           VS +S S EG T
Sbjct: 481 VSVVSQSGEGST 492


>gi|239834065|ref|ZP_04682393.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
 gi|239822128|gb|EEQ93697.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
          Length = 901

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 112/243 (46%), Gaps = 12/243 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+ +   +AD+++++ +  +S++L++PL  I+G    L+       ++ +S+ V  +   
Sbjct: 659 ERAKLAAEADKLRSALLTSISHDLKTPLAAILGAATTLRDYSASLPDADRSELVATVVDQ 718

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATKMHENNIRIKVISD 674
           S  L   + ++LD+  ++AG MK N S   + DL+     + S     H+ N+ + V   
Sbjct: 719 SERLNRFIANLLDMTRIEAGAMKPNLSLHFVGDLIGAALNRASRILACHQVNVAVPV--- 775

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D     Q    +  NA  ++ + S + +KA  D  +    + + G  IP D 
Sbjct: 776 -NLPMVHLDAVLFEQALFNLFDNAAKYAPENSPITVKAHADTSNITLEISDRGPGIPHDD 834

Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEG---VTTINCRIP 789
            + VF+ F     +G   + G GLGL I   FI   GG +   +  EG   V T+   IP
Sbjct: 835 LEHVFDTFY-RVRKGDHVQAGTGLGLPIARGFIEAMGGSIRAGNQQEGTGAVFTVTLPIP 893

Query: 790 SKE 792
           + E
Sbjct: 894 ADE 896


>gi|254521065|ref|ZP_05133120.1| sensory/regulatory protein RpfC [Stenotrophomonas sp. SKA14]
 gi|219718656|gb|EED37181.1| sensory/regulatory protein RpfC [Stenotrophomonas sp. SKA14]
          Length = 910

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 113/230 (49%), Gaps = 11/230 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ALT      R+A+E K+ F+ ++S+E R+PL  + G T++L T++   L+ +Q + +  I
Sbjct: 368 ALTRAVAEARQANEAKSRFLANMSHEFRTPLNGLAGMTEVLATTR---LDDEQRECLNTI 424

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            AS+  LL LV ++LD++ ++AG +++ +    L D+L  +   +  +    ++  +V  
Sbjct: 425 QASTRSLLALVEEVLDISAIEAGKVRVEWHEFALADVLQAINLILTPQTRSKSLDYRVQV 484

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNG 727
           D  +    + D   L QI   ++ NA+ F+  G   +  ++ D          F + + G
Sbjct: 485 DENVPPRLLGDAGHLQQILLNLMGNAVKFTDSGYVQLHVSSPDALGSERVRLRFEIVDTG 544

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             +P  +   +FN F        RR  G GLG +I +  +   GG V  +
Sbjct: 545 IGVPVALRGRLFNAFEQGDVGLARRHEGTGLGTAIAKGLVESMGGQVGYA 594


>gi|218132110|ref|ZP_03460914.1| hypothetical protein BACEGG_03738 [Bacteroides eggerthii DSM 20697]
 gi|217985760|gb|EEC52101.1| hypothetical protein BACEGG_03738 [Bacteroides eggerthii DSM 20697]
          Length = 644

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 109/210 (51%), Gaps = 5/210 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K+ F+ ++S+E+R+PL  + GF+ LL    L   N  + Q  + I  +S +LL L+
Sbjct: 410 ATSAKSIFLSNMSHEIRTPLNALSGFSSLLTEEGLD--NETRRQCNDVILQNSELLLKLI 467

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND++DL++++ G ++ + +   +  +   V  ++ +K+ +    I  I++ +      D 
Sbjct: 468 NDVIDLSSLEFGKIQFSIAKHDVVGICRNVTDTV-SKVKQTQAEIHFITEQESMEIETDD 526

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   +L NA  F+ +GS ++        + +FSV + G  IP++   ++F RF  
Sbjct: 527 SRLQQVLINLLINATKFTPQGSIILEVKKGSKEELLFSVTDTGCGIPKEKQATIFQRFEK 586

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                Q  G GLGLSI +  I   GG + I
Sbjct: 587 LNENAQ--GSGLGLSICQLIIEHIGGKIWI 614


>gi|317477108|ref|ZP_07936349.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316906651|gb|EFV28364.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 644

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 109/210 (51%), Gaps = 5/210 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K+ F+ ++S+E+R+PL  + GF+ LL    L   N  + Q  + I  +S +LL L+
Sbjct: 410 ATSAKSIFLSNMSHEIRTPLNALSGFSSLLTEEGLD--NETRRQCNDVILQNSELLLKLI 467

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND++DL++++ G ++ + +   +  +   V  ++ +K+ +    I  I++ +      D 
Sbjct: 468 NDVIDLSSLEFGKIQFSIAKHDVVGICRNVTDTV-SKVKQTQAEIHFITEQESMEIETDD 526

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   +L NA  F+ +GS ++        + +FSV + G  IP++   ++F RF  
Sbjct: 527 SRLQQVLINLLINATKFTPQGSIILEVKKGSKEELLFSVTDTGCGIPKEKQATIFQRFEK 586

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                Q  G GLGLSI +  I   GG + I
Sbjct: 587 LNENAQ--GSGLGLSICQLIIEHIGGKIWI 614


>gi|299146852|ref|ZP_07039920.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298517343|gb|EFI41224.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1315

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 186/420 (44%), Gaps = 76/420 (18%)

Query: 396  NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            NG++++  +T+ P G +     N+T+++  + K     KV    I+ L+        D +
Sbjct: 656  NGESVNNELTNRPTGISAPWNSNITIRIMSKEKDIFRQKVYRYQIEGLN--------DQQ 707

Query: 456  IKLSNP--AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERK 512
            I+  NP  A RSL         PG++   I A+C+      DG W               
Sbjct: 708  IESYNPELAIRSL--------PPGSY--KIMASCT----AKDGSW--------------- 738

Query: 513  SLQGTLELLSDSVLEYSIIP-------LPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                   + S  VLE +I+P          + T+LT   + ++ R  R L  K E L+ A
Sbjct: 739  -------IPSQEVLELTILPPWYRTWWFILSCTVLTAAAIIETFR--RTLKRKEEKLKWA 789

Query: 566  --------DEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQY--VEYIS 614
                     E K  F+ ++S+ELR+PLT I    + +LK     SL+++ +QY  ++ I 
Sbjct: 790  MKEHEQQVYEEKVRFLINISHELRTPLTLIHAPLSRILK-----SLSAEDTQYLPIKAIY 844

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              S  + NL+N +LD+  ++ G  KL      LN  +  V Q   ++    N+RI+   D
Sbjct: 845  RQSQRMKNLINMVLDVRKMEVGESKLQIQPYALNQWIEHVSQDFVSEGEAKNVRIRYQLD 904

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPE 732
             ++ +   D+ +   I S +L NA+  S + + + + +    +      S+ + G+ + +
Sbjct: 905  PQVNTVSFDKDKCEIILSNLLINALKHSPQDAEITITSELLSEKNSVRISIIDRGNGLKQ 964

Query: 733  DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               + +F RF      G++ G G+GLS     + LHGG +    + E   T    +P ++
Sbjct: 965  VNTQKLFTRFYQGT--GEQSGTGIGLSYSRILVELHGGSIGARDNQEAGATFFFELPLRQ 1022


>gi|295104471|emb|CBL02015.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 509

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 113/226 (50%), Gaps = 4/226 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   +  E ++  D  +  F+ ++++ELR+P+T I GF D +    +      Q+ Y++ 
Sbjct: 241 RTFNQMAENIQSNDNSQGQFMGNIAHELRTPMTTIKGFVDGILDGTIPP--EMQNHYLQL 298

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  L  L+ ++LDL+ +++G  ++N     + + L  V  +   ++++  I ++ +
Sbjct: 299 VSEETGRLARLIQNMLDLSKLESGEYQVNARMFNIWETLTGVALAAEQRINDGMIELEGL 358

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  +     AD   + Q+   +L NA+ F+  G T+     +   +   S+ N+G  I  
Sbjct: 359 TMDEKVLVYADPDLIHQVAYNLLDNAIKFTPAGGTIRFSVEKLGPEAEISIWNSGQGISP 418

Query: 733 DMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776
           +    VF RF   +  RG   RG GLGL+I +  +NL GG + + S
Sbjct: 419 EALPYVFERFYKEDRSRGLHARGSGLGLNICKVLVNLAGGQIRVES 464


>gi|295101233|emb|CBK98778.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 505

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   +  + ++  D  +  F+ ++++ELR+P+T I GF D +    +      Q+ Y++ 
Sbjct: 237 RTFNKMADNIQSNDNSRGQFMGNIAHELRTPMTTIKGFIDGILDGTIPP--DMQNHYLQL 294

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  L  L+ ++LDL+ +++G  ++N     + + L  V  S   ++++  I I  +
Sbjct: 295 VSEETGRLARLIQNMLDLSKLESGEYQVNARMFNIWETLTGVALSAEQRINDGMIDIDGL 354

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  +     AD   + Q+   +L NA+ F+  G T+     R   +   S+ N+G  I  
Sbjct: 355 TMDEKVLVYADPDLIHQVAYNLLDNAIKFTPAGGTIRFGVERLGPEVEVSIWNSGQGISP 414

Query: 733 DMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776
           +    VF RF   +  RG   RG GLGL+I +  +NL GG + + S
Sbjct: 415 EALPYVFQRFYKEDQSRGLHARGAGLGLNICKVLVNLSGGQIRVES 460


>gi|228983851|ref|ZP_04144046.1| hypothetical protein bthur0001_5680 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775900|gb|EEM24271.1| hypothetical protein bthur0001_5680 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 424

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 5/210 (2%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           ++ F+  V++ELR+PLT + G+ D+   SK  +   ++ +Y+  I   S  + NLV D+ 
Sbjct: 196 RSEFLASVAHELRTPLTYVRGYADI--ASKEATSPEQRLRYLSIIKDESDYITNLVQDLF 253

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA ++     +    + L+  L  + + +     E  I++       L   + D QR  
Sbjct: 254 SLAQMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNL-DEQRFE 312

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           Q+   IL+NA   S + S + +    ++     ++++ G  IP +    +F+RF  V  A
Sbjct: 313 QVVVNILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKA 372

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 G GLGLSIV+  + LHGG+++++S
Sbjct: 373 RSRATGGTGLGLSIVKEIVELHGGNITVTS 402


>gi|188589597|ref|YP_001920541.1| sensory histidine kinase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499878|gb|ACD53014.1| sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43]
          Length = 555

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + ++  FV +VS+EL++PLT+I GF + L+  +    N  + +++  I   S  L 
Sbjct: 331 IKKLELMRTQFVANVSHELKTPLTSIKGFAETLRYVED---NETREKFLNIIDKESERLS 387

Query: 622 NLVNDILDLATVDAGIMKLN---YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L+NDIL L+++++ I   N      +++ D++N V++    K    +I ++   D +  
Sbjct: 388 RLINDILVLSSIESNISTPNDEFLPKVIIEDVINMVRKLANNK----DINLEFYDDNQ-E 442

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             + D+ +  Q+   ++ NA+ +S  GS V + +    G +   + +NG  IP++    V
Sbjct: 443 LILGDKDKFYQLTLNLVENAIKYSENGSKVKVVSYSKQGYYYLEISDNGIGIPKEDLPRV 502

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F RF       ++ G GLGL+IV+  +    G +++ S+    +T   RI
Sbjct: 503 FERFYRVDKSRKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRI 552


>gi|325522177|gb|EGD00827.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. TJI49]
          Length = 1219

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQ--SQYV 610
            A   + EA R A+  K++F+  VS+ELR+PL  I G+  +L T S+ G    +Q   + V
Sbjct: 834  AQAARTEAER-ANTAKDNFLGLVSHELRAPLNVISGWAAVLATASERGMPADEQMSQRAV 892

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I     +   L++D+LD++ + +G   L+        ++  V +S         I + 
Sbjct: 893  TTIMRHCQLQAELIDDLLDVSRISSGRFSLDTKPADFAAIVQTVVESNRPVAARKEISLA 952

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                        D +RL Q+ S ++ NA+ F+ +G  V +   R       SV +NG  +
Sbjct: 953  TAGLNARAVVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRLGTMLELSVTDNGIGV 1012

Query: 731  PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV-TTINCR 787
              +    +F+RF+ +     R   G+GLGLSIV+  +  HGG V+ SS  EG  T +  R
Sbjct: 1013 SAEQLPYLFDRFMQSDTSRTRNYGGLGLGLSIVKHLVTAHGGTVTASSEGEGRGTRLTVR 1072

Query: 788  IPS 790
            +PS
Sbjct: 1073 LPS 1075


>gi|325959504|ref|YP_004290970.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330936|gb|ADZ09998.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 573

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ + E+ +AL+++++    F    S++L+ PL  I  F  LL+      L+++ + ++ 
Sbjct: 336 EKKVNERTKALKQSNKELKEFAYVASHDLKEPLRMITTFLQLLERRYKDKLDNEANDFIR 395

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +    S  + N++ND+L+ + +  G  +  +  +    LL+ V  ++ + + + N    +
Sbjct: 396 FAVEGSKRMDNMINDLLEYSRI--GNQEREFEYLQSEKLLDTVLMNLKSSITDTNA---I 450

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           I+   L    A+ Q ++Q+F  I+SN++ +   K   + +     N ++IF +K+NG  +
Sbjct: 451 ITHDPLPLIFANEQLMIQLFQNIISNSIKYHGEKNPEIHISTDNANDEYIFIIKDNGIGM 510

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++  K +F  F     R +  G G+GL+IV+  +  H G + + S     TT    IP+
Sbjct: 511 NQNHLKKIFTIFQRLHTREEYEGTGIGLAIVQKIVQKHRGKIWVESELGKGTTFYFTIPN 570

Query: 791 K 791
           K
Sbjct: 571 K 571


>gi|325972366|ref|YP_004248557.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
 gi|324027604|gb|ADY14363.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
          Length = 935

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 12/229 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  VS+E+R+PL  I G + LL+ +   SL++ Q +YV+ IS ++  + +++NDIL
Sbjct: 318 KSRFLARVSHEIRTPLNGIRGMSYLLEKT---SLDANQMRYVKTISGATQTMQSIINDIL 374

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           + + +D   + L      L+D+L       +  + +  +  ++   D      V D  RL
Sbjct: 375 EFSRLDEDRIILENIPFALDDVLENCISIESYLIQQKGLHFRLNQPDDVPQHLVGDPTRL 434

Query: 688 LQIFSKILSNAMDFSSKGS---TVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI   +L+NA+ F+  GS   TV ++  A  +    F VK+ G  + E   +++F  FV
Sbjct: 435 AQILINLLNNAVKFTEAGSIDLTVQVQTLAEQSCSLSFEVKDTGIGMNEQQMENLFKPFV 494

Query: 744 -SNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +NA  HR +  G GLGLSIV++ +   GG ++++S     +     IP
Sbjct: 495 QANASIHR-KYGGSGLGLSIVKALVEKMGGTLTVTSEMGKGSAFTATIP 542


>gi|313110945|ref|ZP_07796785.1| hypothetical protein PA39016_002870020 [Pseudomonas aeruginosa
           39016]
 gi|310883287|gb|EFQ41881.1| hypothetical protein PA39016_002870020 [Pseudomonas aeruginosa
           39016]
 gi|327482585|gb|AEA85895.1| sensor histidine kinase [Pseudomonas stutzeri DSM 4166]
          Length = 464

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 14/226 (6%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL---LNLVND 626
           + F   +S+ELR+PLTN++G     K     S      +Y E + + +  L    ++V D
Sbjct: 243 SQFSDDLSHELRAPLTNLMG-----KAQVALSRPRSSEEYREVLESCAEELDRMKSMVAD 297

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +L LA V      + + T+ L D +  V    +    E+ +R+ V   G +     +R  
Sbjct: 298 MLFLAHVSQPAALVQFETVALVDEVQRVSDLFSLSAEESGVRLDV--SGSVDVIQGNRLM 355

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + +  S +LSNA+ +  +G  V++K  R+      SV N G  IPE+    +F RF    
Sbjct: 356 IQRAVSNLLSNAIRYCPQGQAVVVKVHREQEHIRLSVGNPGQGIPEEHLPHLFERFY-RV 414

Query: 747 HRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +G+ R   G GLGL+IV S ++LH G   +  +  G T  +   P
Sbjct: 415 DKGRARSEGGTGLGLAIVRSIMSLHQGVAKVEITGSGFTWFHLSFP 460


>gi|300865282|ref|ZP_07110096.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336755|emb|CBN55246.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 663

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 130/260 (50%), Gaps = 34/260 (13%)

Query: 550 RAERALTEKNEALRK--------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           R ++ L ++NE L+K              A + K+ F+ ++S+ELR+PL  I+GFT ++ 
Sbjct: 132 RLQKQLIQQNEQLQKEIVERKKAEESAAAASKAKSEFLANMSHELRTPLNAILGFTQVMI 191

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L++ Q + +  I+ S   LL+L+ND+LD++ ++AGI+ ++ ++  L  LL+ ++
Sbjct: 192 RDPF--LSTDQLENLRIINRSGEHLLDLINDVLDMSKIEAGIITISETSFDLYRLLDTLE 249

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LK 711
           +    K  +  ++++      +  ++ AD ++L      +L NA+ F+  GS  +   L 
Sbjct: 250 EMFHFKAEKKGLKLRFTVHPDVPHYIKADEKKLRICLINLLGNAIKFTENGSVTLRVNLG 309

Query: 712 AARDNGDFI-------------FSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQRRGVGLG 757
                   +             F V++ G  I  +   S+F+ FV S A R    G GLG
Sbjct: 310 GIESKPGLVHTTVSESEPFPITFEVEDTGVGIAPEEIDSLFDAFVQSEAGRKSAEGTGLG 369

Query: 758 LSIVESFINLHGGHVSISSS 777
           L+I   F+ L  G+++  S+
Sbjct: 370 LTITRKFVQLLKGNITAVSA 389


>gi|256848491|ref|ZP_05553933.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714758|gb|EEU29737.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 620

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 120/248 (48%), Gaps = 35/248 (14%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTIL 620
           +K D+ +  FV +VS+ELR+PLT++  + + L     G+    +   Q+++ +   +  +
Sbjct: 372 QKEDQERKQFVSNVSHELRTPLTSVKSYVEALSD---GAWKDAEIAPQFLKVVQDETDRM 428

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV-----------------KQSIATKMH 663
           + ++ND+L L+ +D+G +KLN   + +N+L N +                 K +I  K+ 
Sbjct: 429 IRMINDLLSLSRMDSGTVKLNLEYVNINELFNYILDRFDMILKKETDPQQKKYTIQRKIT 488

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + ++ +++ +D              Q+   I++NA+ +S  G  +  +        I S+
Sbjct: 489 QKDLWVEIDTDT-----------FTQVIDNIMNNAVKYSPDGGVITARLMETKNHVIMSI 537

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP      +F+RF  V  A   ++ G GLGL+I +  +NL GG + + S +   
Sbjct: 538 ADQGLGIPRKDIGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSIEGKG 597

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 598 STFYISLP 605


>gi|229176140|ref|ZP_04303633.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
 gi|228607375|gb|EEK64704.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
          Length = 588

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 419

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 420 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 477

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|229142214|ref|ZP_04270738.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
 gi|229199594|ref|ZP_04326255.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228583999|gb|EEK42156.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228641232|gb|EEK97539.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
          Length = 588

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 419

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 420 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 477

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|254414421|ref|ZP_05028187.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178651|gb|EDX73649.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 992

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 118/248 (47%), Gaps = 10/248 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VT+  +A+  L E N+ L +++     F    S++L+ PL  +  +  LL       L++
Sbjct: 751 VTERKQAKEKLKELNQELWQSNRDLEQFAYVASHDLQEPLRAVNSYAQLLSRKYQNQLDA 810

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVD--AGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           K  +Y+ YI   +T +  L+ND+L+ + V      ++   S  ++   +  +  +IA   
Sbjct: 811 KADKYLHYIMDGATRMQQLINDLLEFSRVGTRGKPLQPTDSETIIRQAMENLNVAIAESQ 870

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIF 721
                   +++   L + +AD+ +L Q+F  ++ NA+ F  +    +  +A++ G ++ F
Sbjct: 871 -------AIVTYDALPTVIADQTQLTQLFQNLIGNAIKFRRETPPNVHISAQNQGNEWTF 923

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++NG  +  +    +F  F     R    G G+GL+I +  +  HGG + ++S     
Sbjct: 924 VVQDNGIGMESEYLDRIFTIFQRLHSRRDYPGTGIGLAICKKIVERHGGRIWVNSELGIG 983

Query: 782 TTINCRIP 789
           TT    IP
Sbjct: 984 TTFYFTIP 991


>gi|313632438|gb|EFR99461.1| histidine protein kinase SaeS [Listeria seeligeri FSL N1-067]
          Length = 347

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 114/230 (49%), Gaps = 3/230 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++  +E +   + ++S+++++P+ +I  F++ L    + +   KQ QY+  I   +  L 
Sbjct: 113 IKDGEEKRTELIANLSHDIKTPVASIRSFSEALLDGMIVAETEKQ-QYLRTIQRETVRLT 171

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +LV++++D+A +D     LN S I L+ L+  V +S   ++   +  I V  +       
Sbjct: 172 DLVDELMDVAAIDKKQPVLNRSRIWLDQLIINVLESFNVQLKREHRDIHVTIEPGCDPLY 231

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD+  + +I   ++ NA+ FS  G+T+ LK    +   +F VK+ G  I  +    +F R
Sbjct: 232 ADQTFVTRILCNLIENALKFSDAGTTIELKITSTDEATMFFVKDYGQGISSEDIPRIFER 291

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              V  +      G GLGL I ++   LHGG + + S  +  +T    IP
Sbjct: 292 LYRVEKSRNLAHGGSGLGLHIAKNLTELHGGTIQVESELQVGSTFILTIP 341


>gi|300864140|ref|ZP_07109035.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337868|emb|CBN54181.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1037

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 16/249 (6%)

Query: 551 AERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER   L E  E    A+  K+ F+ ++S+ELR+PL  I+G+  +L+ SK  SL     +
Sbjct: 547 AERTVELKEAKEIADSANRAKSEFLANMSHELRTPLNGILGYAQILQRSK--SLVELDQK 604

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I+   T LL L+NDILD + ++A  M++  +       L  V +    K  +  I 
Sbjct: 605 GIGIINQCGTHLLTLINDILDFSKIEARKMEIYAADFYFPSFLEAVIEICRIKAEQKGID 664

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGD------- 718
               ++G +   +  D +RL Q+   +L NA+ F+ +GS   L  +R  ++ D       
Sbjct: 665 FIDQTEGVIPLGIHTDEKRLRQVLINLLGNAIKFTEQGSVKFLINSRKVESEDREVNLYR 724

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F V++ G  I +D  K++F  F  S   + Q  G GLGL+I ++ +++ G  + +  S
Sbjct: 725 IRFQVEDTGVGISKDHIKNIFLPFEQSGNMKKQSEGTGLGLAISKNIVDMMGSTLEV-ES 783

Query: 778 DEGVTTINC 786
           + G  ++ C
Sbjct: 784 ELGKGSVFC 792


>gi|291518851|emb|CBK74072.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens
           16/4]
          Length = 779

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 15/271 (5%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y II L    TM     + D    ER +     A  +A +   +F+  +S+E+R+P+  I
Sbjct: 366 YLIIGLLFLITMAYMRALKDIRNTEREMY----AAVQAQDASTAFMTRMSHEMRTPINAI 421

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +G   + L+ SK    +     Y   ++++   LL++VN++LDLA V AG +++      
Sbjct: 422 LGMNKMILRESK----DDAILDYARDVNSAGNYLLSIVNEVLDLAKVTAGRIEIIPEEYD 477

Query: 647 LNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L D++ E    +  +   N +  +V +SD      + D++R++Q+ + +L+NA+ ++  G
Sbjct: 478 LMDMIRECYSLVRPRAKANRLSFEVDMSDVLPSKLMGDKERVIQVITNLLTNAVKYTPAG 537

Query: 706 S-TVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
             T+ ++     G    I  V + G  + E+    +F+ F  V   +  +  G GLGL+I
Sbjct: 538 RVTLSVQGKISEGRLLLIVGVTDTGIGVAEENIPYLFDSFRRVGEFNNKKIEGTGLGLTI 597

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  + L GG +S+ S     TT    IP +
Sbjct: 598 TKQLVELMGGSISVESELGKGTTFTVMIPQE 628


>gi|171058133|ref|YP_001790482.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775578|gb|ACB33717.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 945

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 129/266 (48%), Gaps = 27/266 (10%)

Query: 536 AQTMLTFVNVTDSVRAERAL---------------TEKNEALRKADEI---KNSFVQHVS 577
           A  +L   ++T+  RAE+ L                + NEA R+A+     K++F+ ++S
Sbjct: 514 AHFILLLRDITERKRAEQTLDDYRQGLEAMVGERTAQLNEATRRAEAANVAKSAFLANMS 573

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+G + L++   L  L   Q++ ++ + A++T LL ++N ILDL+ +DAG 
Sbjct: 574 HEIRTPLNAIVGMSHLIR---LAGLPPAQTERLDKLKAAATHLLEILNAILDLSKIDAGK 630

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             L    + +  ++      +  +    ++R+    D    S V D  RL Q      +N
Sbjct: 631 FTLEEIPLRVESIIANTLSMLDDRARAKSLRLTSEVDRMPRSLVGDPTRLQQALLNYANN 690

Query: 698 AMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           A+ F+  GS TV  +    + + +   F V++ G  I +    ++F+ F        RR 
Sbjct: 691 AIKFTDAGSVTVRARLVEQHAEDVLVRFEVEDTGIGIDDAAIGNLFSAFQQADSATTRRS 750

Query: 753 -GVGLGLSIVESFINLHGGHVSISSS 777
            G GLGL+I +    L  G+  ++S+
Sbjct: 751 GGTGLGLAITKKLAELMKGNAGVTST 776


>gi|170690963|ref|ZP_02882129.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           graminis C4D1M]
 gi|170144212|gb|EDT12374.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           graminis C4D1M]
          Length = 1175

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 15/245 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   + +EA+ +A   + +F   +S+E+R+PL  ++G  +L   ++   L++  +Q +  
Sbjct: 535 RQAQQTSEAMMRA---RTNFFAAMSHEIRTPLNALLGNLELF--ARTPGLDA-HAQRLAS 588

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KV 671
           ++ +   L  +VNDILD + +DAG M L  +   L D    +  S A+   +  +R   +
Sbjct: 589 LNVAGDALRRVVNDILDFSKIDAGEMLLVRAPFALLDAFENIALSYASMAGDRRVRFYSL 648

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFS--VKNNG 727
           +S     + + DR R+ Q+ + +LSNA  F+S G   +     D+  G  +    V ++G
Sbjct: 649 LSPAIDRTVIGDRMRIAQVINNLLSNAFKFTSSGKITLQAELADDTPGHPVLKCRVSDSG 708

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             + E++   +F  FV     G  RG    GLGL+I      L GG VS  S     +  
Sbjct: 709 PGMSEELVGRLFKPFV-QGEAGASRGAESTGLGLAICARLCELMGGAVSAESVVGVGSVF 767

Query: 785 NCRIP 789
           N  IP
Sbjct: 768 NVSIP 772


>gi|241202805|ref|YP_002973901.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856695|gb|ACS54362.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 760

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 10/247 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFT 591
           A   L   +V   V  ER + +  E  R+  E     K+  +  VS+E+R+PL+ I+G T
Sbjct: 207 ANGRLLLQSVARDVTDERLIAQGREEARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMT 266

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L+  ++L     +Q  Y+  I  S   L  LV D+LD +T++ G   L+  +  L  LL
Sbjct: 267 HLIAETRL---TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFALHPRSESLRKLL 323

Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V + +A + HE  I I   +S     +   D  RL Q+   ++ NA+ F+  G  V +
Sbjct: 324 ESVVEMLAHRAHEKGIEIGATVSSDVPENMSFDPARLRQVLFNVIGNAVKFTQVGG-VFI 382

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + + D+ D   +V ++G  +  +    VF  F        +  G GLGL+I    +    
Sbjct: 383 RVSLDDDDLSITVTDSGPGMTTEEQARVFGEFEQGGSVVDKSSGTGLGLAISARIMREFN 442

Query: 770 GHVSISS 776
           G ++++S
Sbjct: 443 GALTVAS 449


>gi|325203687|gb|ADY99140.1| putative sensor histidine kinase CpxA [Neisseria meningitidis
           M01-240355]
          Length = 468

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 14/219 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L K    +   + HVS+E+RSPL  +     L++         KQ QY++ +    T 
Sbjct: 228 EKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQP-----QKQEQYLKRLEGELTR 282

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGK 676
           +  L  ++L L+ ++   M L   ++ L   L    E  QSIA K   N   + + +DGK
Sbjct: 283 MDTLAGELLTLSRLETSNMALEKESLKLLPFLGNLVEDNQSIAQK---NGQTVTLSADGK 339

Query: 677 LG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +    + +A+   L + F  ++ NA+++S +GST+++   +D+  +I  V +NG  + E 
Sbjct: 340 IPENTTILANESYLYRAFDNVIRNAINYSPEGSTILINIGQDHKHWIIDVTDNGPGVDEM 399

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
               +F  F        + G GLGL++ +  I  H G +
Sbjct: 400 QLPHIFTAFYRADSSANKPGTGLGLALTQHIIEQHCGKI 438


>gi|307943987|ref|ZP_07659329.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4]
 gi|307772828|gb|EFO32047.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4]
          Length = 1168

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 226/515 (43%), Gaps = 55/515 (10%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANK 364
           T   + + +L     ++D++  L   N  + E + +      + P N    + +R  A++
Sbjct: 400 TRLVDAIESLPDGFVLYDKDDRLVVCNSKYKEFYHLSADL--SEPGN-RFEDIIREGAHR 456

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWH-----LPNGQTLHVIVTSNPRGGTIWMFENL 419
              Q +  T  + I    +  E H++        L +G+ L V       GG +    ++
Sbjct: 457 GQYQFDAGTVDDRI---EQRLEQHRNPGEPMEQFLADGRWLRVFEARTSEGGLVGFCVDI 513

Query: 420 TVQVDLETKYNTLVKVQGETIDHLS---EGVAVFGPDGRIKLSNPAFRSL--WKTEE--- 471
           T   +L+ +   L++ QG   + +S   +GV V   +G +   NPA   +  W ++E   
Sbjct: 514 T---ELKHREQELLRSQGLLQNVVSASFDGVIVMNAEGVVLDFNPAAEDVFGWTSDEIVG 570

Query: 472 NRLSP---GTHIRNI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
            RLS      H+R    A  S Y    +G      +I     +R  +QG  +     +LE
Sbjct: 571 ERLSDFIIPEHLREAHEAGLSHYLATGEG-----PVIG----KRIEIQGLHK--QGHILE 619

Query: 528 YSI-IPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             + I    + T   F+    ++T+   A+ AL +  E    A+E K  F+  +S+E+R+
Sbjct: 620 VELAIRQTTSDTGPLFLGYVRDITERKAADEALRDAKERAEAANEAKAKFLAMMSHEIRT 679

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  ++G   LL+ +   +LN  Q  YV+    S   LL L+NDILD + ++A  ++L+ 
Sbjct: 680 PMNGVLGILSLLRDT---NLNPAQEIYVKTARESGRSLLELINDILDFSKLEASRVELDQ 736

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +   L   +  V         E  + +  +  SD    + V D  RL Q+    +SNA+ 
Sbjct: 737 APFNLRTAVKSVVDLFTPIAQEKALELNWRFPSDLPR-NVVGDAGRLRQVLLNFVSNAIK 795

Query: 701 FSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           F+  GS  +     K+      F FSVK+ G  IP +   ++F  FV+      +R  G 
Sbjct: 796 FTELGSVEVNVGLEKSDPQKPVFRFSVKDTGIGIPAEKHDALFGDFVTVDGASTKRYGGT 855

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I +   +L  G +++ S     +T +  +P
Sbjct: 856 GLGLAISKQIADLMEGEITLESLPGAGSTFHFFVP 890


>gi|228924360|ref|ZP_04087607.1| hypothetical protein bthur0011_53110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835309|gb|EEM80703.1| hypothetical protein bthur0011_53110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 279

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 13/236 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K+   +   +  +S+++R+PLT+IIG+ D LK     S   K+ +Y+E IS  S+ L  L
Sbjct: 48  KSQNARKRLLSSISHDIRTPLTSIIGYIDALKDDIAVSREEKK-EYLEIISKKSSNLKQL 106

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +N+I ++A +DA  + +N   + L ++  EV      ++ +NN+ +K +S  K   F+ A
Sbjct: 107 INEIFNMAKLDADEVLINPEFLELTEITREVLIEYLPEIKKNNLELK-LSLPKTKCFITA 165

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   +++I   ++ NA+ +  +G  + ++    N +F   V + G  I E     VF R 
Sbjct: 166 DYLSIIRIIDNLIKNAIIYGKEGKVLGIELMESNQEFQLLVWDKGQGIAEHDLDHVFERM 225

Query: 743 VSNAHRG-QRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               +RG Q R     G GLGL+I +S +  + G + + SS    T      P  E
Sbjct: 226 ----YRGDQSRNSINGGSGLGLAIAKSLVEKNQGRIWVESSPWNKTVFGISFPKTE 277


>gi|229015977|ref|ZP_04172938.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273]
 gi|229022194|ref|ZP_04178744.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272]
 gi|228739125|gb|EEL89571.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272]
 gi|228745337|gb|EEL95378.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273]
          Length = 463

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           ++ F+  V++ELR+PLT + G+ D+ LK S   +   ++ +Y+  I   S  + NLV D+
Sbjct: 235 RSEFLASVAHELRTPLTYVRGYADIALKES---TPPEQRLRYLSIIKDESDYITNLVQDL 291

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
             LA ++     ++   + L+  L  + + +     E ++ +       L   + D QR 
Sbjct: 292 FSLAQMEKHNFFIHVQEVHLHPFLTRITEKVNAMYKERHVTVSFTCPPSLLVNL-DEQRF 350

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
            Q+   IL+NA   S + S + +    ++      +++ G  IP +    +F+RF  V  
Sbjct: 351 EQVVVNILNNAYRHSKEHSHINISVTEEDKHISIKIEDEGEGIPPEDLPHIFDRFYRVDK 410

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           A      G GLGLSIV+  + LHGG+++++S  +  +     +PS
Sbjct: 411 ARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLPS 455


>gi|229159025|ref|ZP_04287081.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
 gi|228624444|gb|EEK81215.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
          Length = 588

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 419

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 420 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 477

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 478 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 536

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 537 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1319

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 11/230 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + ++    A+  K++F+ ++S+E+R+P+  I+G T LLK     + +  Q   +E I 
Sbjct: 698 LAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRD---TPDHTQHDRLEKID 754

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL ++ DILDL+ +DAG M L      L  +L+ V   ++ +     + I ++  
Sbjct: 755 NAAQHLLTIITDILDLSKIDAGKMVLEQGDFSLTAMLDNVSALMSEQARAKGLTI-IVDI 813

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR--DNGDFI-FSVKNNGSS 729
           G   ++V  D  RL Q      +NA+ F+ +GS T+ ++  R   NG  + F V++ G  
Sbjct: 814 GDSPAWVHGDITRLRQALLNYAANAIKFTEQGSVTLRVRVERPLSNGYLLRFEVEDTGIG 873

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           I  +  + +F  F        R+  G GLGL+I      L GG V + S+
Sbjct: 874 ISPEQREKLFQAFEQADASTTRKYGGTGLGLAITSRLATLMGGEVGVEST 923


>gi|116694038|ref|YP_728249.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113528537|emb|CAJ94884.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a purine-cytosine permease domain
           [Ralstonia eutropha H16]
          Length = 1111

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 4/240 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  L    E   +A+  K+ F+  +S+E+R+ L +I+G++ LL  +   +L +   + 
Sbjct: 662 RTDALLQSAKEVAEQANLAKSRFITGMSHEMRAGLNSILGYSQLLLRTP--ALPAACRED 719

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  +   L +LV+ +L+L+ ++AG ++L    + L DLL+E+ +          +  
Sbjct: 720 VRTIGRAGEHLSSLVDGLLELSRIEAGKLRLEQDAVALEDLLDELVRMFRPLAAVRGLAF 779

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
                GKL + V  D +RL QI   +++NA+ F+  G  V L         + +V + G 
Sbjct: 780 HYRVTGKLPAHVHGDAKRLRQIIINLVTNAIKFTEHGD-VSLTVRHQRELAMITVSDTGP 838

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  +    +F+ F        R G+GLGL+IV    +L GG + + S+    +  + R+
Sbjct: 839 GIAAEDQARIFDPFERATPHDDREGIGLGLAIVRLLADLMGGDIRVRSAPGQGSEFSVRL 898


>gi|313900869|ref|ZP_07834359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
 gi|312954289|gb|EFR35967.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
          Length = 547

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 122/224 (54%), Gaps = 12/224 (5%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LRK + ++   + ++S++LR+PLT I G+ ++++   +   N+ ++  V+ I   +  L 
Sbjct: 314 LRKVENLRRELIANMSHDLRTPLTMISGYGEVMR--DIPGENTPEN--VQIIIDETKRLT 369

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT--KMHENNIRIKVISDGKLGS 679
           NLVND+LDL+ + AG+ +L+  ++ L D +  + +   T  K  E +IR +   D  +  
Sbjct: 370 NLVNDMLDLSKLQAGVQELHAVSMNLTDEIRSIIERYETLLKQDEYDIRFEYREDVIIQ- 428

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  +L Q+   +++NA+++S +   VI+K   + G     + ++G  I +D    ++
Sbjct: 429 --GDVIKLDQVIYNLINNAINYSGEDHQVIVKQLLELGRVRIEIIDHGPGIEKDKLAYIW 486

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            R+  V   H   R G GLGLSIV++ + LH     +  S+EGV
Sbjct: 487 ERYYKVDKTHVRSRVGSGLGLSIVKAVLELHKAEYGV-LSEEGV 529


>gi|291545377|emb|CBL18485.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 799

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 29/293 (9%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKN 570
           + T ++ S   LE+  + L   + +L  ++VT   +AE    +AL E   +   A+  K 
Sbjct: 503 EKTYKIASYIPLEWKNVKLE--KVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKT 560

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE---YISASSTILLNLVNDI 627
            F+ ++S+++R+P+  I+G T +      G+    Q + +E    I+ SS  LL L+N++
Sbjct: 561 EFLSNMSHDIRTPMNAIVGLTAI-----AGANVESQDRVIECLGKITESSRHLLGLINEV 615

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEV----KQSIATKMHENNIRIKVISDGKLGSFVAD 683
           LD+A ++ G M L      L++L++ +    K  +    H  +I I  I      +   D
Sbjct: 616 LDMARIERGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHNFDIHINHIEH---EAVCGD 672

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKS 737
             R+ Q+F  ++SNA+ ++  G   I           + G + F++++NG  +  +  K 
Sbjct: 673 SLRIQQVFVNLMSNAIKYTPDGGNTIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKI 732

Query: 738 VFNRFV-SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F  ++ HR  R +G GLG++I  + +NL  G + + S+    T I   I
Sbjct: 733 MFEPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785


>gi|254476057|ref|ZP_05089443.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214030300|gb|EEB71135.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 883

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 17/257 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D + AER L    +     +  K   +  +S+E+R+PLT ++G  DLL  S    L+
Sbjct: 337 DISDRIAAERELRNARDKALAGERAKAELLTVMSHEMRTPLTGVLGAVDLLSDS---GLS 393

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV--KQSIATK 661
           ++QS YV  I  S   L+  VND+L L+ +++ +   N     L  L+ E+   Q  A +
Sbjct: 394 AEQSGYVTMIRQSGDRLMGHVNDVLQLSNLESSVDNENRRIFDLAKLVGELVKSQQTAAR 453

Query: 662 MHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              N +        ++  LG  +A  QR+LQ   KIL NA+DF+  G+  +      + D
Sbjct: 454 QAGNELSWSCNLGPTNNVLGRPLA-VQRVLQ---KILQNAVDFTRDGAVAVEVQRLGSSD 509

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +  S+ + G  I ED    +F  F+    ++     G GLGL+I    +   GG +S  
Sbjct: 510 RVEISIADTGKGIAEDDLDRIFEDFIRLDASYSRSSEGTGLGLAITRRTVEAMGGDISCE 569

Query: 776 SS-DEG-VTTINCRIPS 790
           S   EG + TI+  +P+
Sbjct: 570 SELGEGSLFTISLPLPA 586


>gi|194292840|ref|YP_002008747.1| sensor hybrid histidine kinase with pas domain [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226744|emb|CAQ72695.1| Putative sensor hybrid histidine kinase with PAS domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 662

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 4/212 (1%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            SF+  +++ELR+PL  +    + +  +       +  +  E I      +  LVND+LD
Sbjct: 294 QSFLAILAHELRNPLAPVRNALEAIVLA--ADTGPRVRRCAEIIDRQLRQIERLVNDLLD 351

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           +  V AG MK+  +    ND+++   ++I   +     ++ V++  ++  +V AD  RL 
Sbjct: 352 VGRVTAGKMKMELTPTSYNDVVSTCLEAIRPTLEAAGQQL-VVALPEVTPYVRADAARLG 410

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   +LSNA  ++ +G TV ++ + +    I +V + G  +       +FN F      
Sbjct: 411 QVLLNLLSNAAKYTPRGGTVSVRVSVEPARVITAVSDTGRGLEPSALDRIFNLFAQEGDA 470

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           G R G+G+GL++ ++ +  HGG +   S+  G
Sbjct: 471 GSRSGLGVGLALAKAIVEAHGGAIQADSAGVG 502


>gi|170740045|ref|YP_001768700.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168194319|gb|ACA16266.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 606

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 101/217 (46%), Gaps = 9/217 (4%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +K+ F+  VS+ELR+PL  IIGF+++L   + L     +Q +Y   I  S   LL +VN 
Sbjct: 348 VKSRFLAVVSHELRTPLNAIIGFSEMLSAEANLALPPERQREYAAIIHGSGRHLLEVVNA 407

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LDL  + +G          L  L+N     +  +  +  I +       L    AD + 
Sbjct: 408 LLDLTKIQSGSFDFAPEPFDLRALVNGCCDLMQLRADQGGIELMRDVPRDLPELTADPRA 467

Query: 687 LLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV- 743
             Q+   +LSNA+ F+ +G   TV ++A  D      SV + G  I E     + + F  
Sbjct: 468 CRQMLINLLSNAVKFTPRGGRITVAVRAIYDR--IEMSVTDTGVGIAEADLPRLGDPFFQ 525

Query: 744 ---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              S A+     G GLGLS+V   + LH G + + SS
Sbjct: 526 AGDSAAYARMHEGTGLGLSVVRGLVGLHDGELLLESS 562


>gi|153950420|ref|YP_001402786.1| sensor histidine kinase/response regulator EsrA [Yersinia
           pseudotuberculosis IP 31758]
 gi|152961915|gb|ABS49376.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 939

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 110/214 (51%), Gaps = 7/214 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L++ Q +  E     S  LL +
Sbjct: 393 QANRRKSDHLTTISHEIRTPLNGALGAVELLQNTP---LDAGQMRLAETAHQCSLSLLAI 449

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +N++LD + +++G M L+     L  LL++   +I ++    ++ +       +      
Sbjct: 450 INNLLDFSRIESGQMTLSLKKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELEL 509

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI   +L NA+ F+ +G  + L+  R N    F+V++ G  I     +++F  F
Sbjct: 510 DTLRLRQILVNLLGNAVKFTPQGR-IQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPF 568

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +  +   Q  G GLGL+I ++   + GGH+++ S
Sbjct: 569 MQTSDHEQ--GTGLGLAIADNLAKMMGGHLTVFS 600


>gi|296314967|ref|ZP_06864908.1| putative sensor histidine kinase CpxA [Neisseria polysaccharea ATCC
           43768]
 gi|296838164|gb|EFH22102.1| putative sensor histidine kinase CpxA [Neisseria polysaccharea ATCC
           43768]
          Length = 468

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 14/219 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L K    +   + HVS+E+RSPL  +     L++         KQ QY++ +    T 
Sbjct: 228 EKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQP-----QKQEQYLKRLEGELTR 282

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGK 676
           +  LV ++L L+ ++   M L   ++ L   L    E  QSIA K   N   + +  DGK
Sbjct: 283 MDTLVGELLTLSRLETSNMALEKESLKLLPFLGNLVEDNQSIAQK---NGQTVALSVDGK 339

Query: 677 LG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +    + +A+   L + F  ++ NA+++S +GST+++   +D+  +I  V +NG  + E 
Sbjct: 340 IPKNTTILANESYLYRAFDNVIRNAVNYSPEGSTILINIGQDHKHWIIDVTDNGPGVDEM 399

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
               +F  F        + G GLGL++ +  I  H G +
Sbjct: 400 QLPHIFTAFYRADSSANKPGTGLGLALTQHIIEQHCGKI 438


>gi|291535930|emb|CBL09042.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 529

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 16/266 (6%)

Query: 540 LTFV--NVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           L FV  +VTD+   E    R + +   A ++AD  K+ F++ +S+E+R+PL +IIG +  
Sbjct: 116 LVFVRRDVTDNYEEEQNRQREIYDAMLAAKRADRSKSEFLERMSHEIRTPLNSIIGLS-Y 174

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  + LG    K  +  + I  S+  L + ++DIL+L+ +++G +  +  +      L  
Sbjct: 175 LSRANLGD-EKKVLENFDKIEMSAQFLRSCMDDILNLSLLESGRVAFHEESTDFEAFLTH 233

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS-KGSTVILK 711
           +++  + K  E  I   V   G     ++ DR++L +  S IL NA+ ++  +GS   + 
Sbjct: 234 IEKEFSDKAQEKKISFSVQRRGSFADQYLFDREKLNEALSAILENAVKYTQPEGSVFFII 293

Query: 712 AARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFI 765
                G+    F F +++NG  + ++    +F+ F     R      G GLGL+I ++ I
Sbjct: 294 ELFTRGEQETIFRFEIRDNGIGMEQNFLPHIFDAFAQEDDRNTTLSGGTGLGLTISKNII 353

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
           +  GG + + S     +     +P K
Sbjct: 354 DFMGGKIDVYSEKGKGSAFVVTVPLK 379


>gi|206968235|ref|ZP_03229191.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|218233456|ref|YP_002366243.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|228957837|ref|ZP_04119577.1| hypothetical protein bthur0005_13500 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229043303|ref|ZP_04191023.1| hypothetical protein bcere0027_13550 [Bacillus cereus AH676]
 gi|229144160|ref|ZP_04272575.1| hypothetical protein bcere0012_13240 [Bacillus cereus BDRD-ST24]
 gi|229177969|ref|ZP_04305341.1| hypothetical protein bcere0005_13320 [Bacillus cereus 172560W]
 gi|206737155|gb|EDZ54302.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|218161413|gb|ACK61405.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|228605457|gb|EEK62906.1| hypothetical protein bcere0005_13320 [Bacillus cereus 172560W]
 gi|228639379|gb|EEK95794.1| hypothetical protein bcere0012_13240 [Bacillus cereus BDRD-ST24]
 gi|228726017|gb|EEL77254.1| hypothetical protein bcere0027_13550 [Bacillus cereus AH676]
 gi|228801753|gb|EEM48630.1| hypothetical protein bthur0005_13500 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 604

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 141/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ + 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNID 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ IPE
Sbjct: 482 ADPSI-LVKANRSRIEQVVVNLLSNAIRYTPEGEKIQVSIIEAEDTVKVEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|114046681|ref|YP_737231.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-7]
 gi|113888123|gb|ABI42174.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 935

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 14/232 (6%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y+  I  S
Sbjct: 291 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYINTIERS 345

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + L E    I+       + + V I+  
Sbjct: 346 ATNLLAIINDILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVDIAPN 405

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++    ++  D        V + G  I 
Sbjct: 406 VPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTGIGID 465

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEG 780
           +     +F  F        RR  G GLGL I +  +N  GG +  +S+ D+G
Sbjct: 466 DSQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKG 517


>gi|297531092|ref|YP_003672367.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297254344|gb|ADI27790.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 423

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 7/241 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A RAL     A +K    +  FV   S+ELR+PL+ I   TD L  S   ++  K S  +
Sbjct: 179 AGRALVPIQAAWKK----QQQFVSDASHELRTPLSVIQAKTDALFRSPKATIEEK-SVDI 233

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+     L  LV+ +L LA  D+  +++      L++L+ ++ +  +         + 
Sbjct: 234 SVIAKECRRLSRLVSQLLTLARSDSNQLEMQKEAFRLDELVRDIGEQYSEIASYQQKTMS 293

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V +   +  +V DR+R+ Q+   +L NA+ ++++G  + L   R +   +  V+++G  I
Sbjct: 294 VEAQIPI-EWVGDRERIHQLIVILLDNALKYTTEGGHIRLACHRFSSSVVVEVEDDGIGI 352

Query: 731 PEDMCKSVFNRFV-SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           P +    +F+RF  S+  R Q  G GLGL+I +  I+ H G V + S     T      P
Sbjct: 353 PTEDLPRIFDRFYQSDKARSQSDGAGLGLAIAKWIIDQHHGKVKVESKLGEGTRFQVMFP 412

Query: 790 S 790
           +
Sbjct: 413 A 413


>gi|237723233|ref|ZP_04553714.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229447755|gb|EEO53546.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1315

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 186/420 (44%), Gaps = 76/420 (18%)

Query: 396  NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            NG++++  +T+ P G +     N+T+++  + K     KV    I+ L+        D +
Sbjct: 656  NGESVNNELTNRPTGISAPWNSNITIRIMSKEKDIFRQKVYRYQIEGLN--------DQQ 707

Query: 456  IKLSNP--AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERK 512
            I+  NP  A RSL         PG++   I A+C+      DG W               
Sbjct: 708  IESYNPELAIRSL--------PPGSY--KIMASCT----AKDGSW--------------- 738

Query: 513  SLQGTLELLSDSVLEYSIIP-------LPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                   + S  VLE +I+P          + T+LT   + ++ R  R L  K E L+ A
Sbjct: 739  -------IPSQEVLELTILPPWYRTWWFILSCTVLTAAAIIETFR--RTLKRKEEKLKWA 789

Query: 566  --------DEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQY--VEYIS 614
                     E K  F+ ++S+ELR+PLT I    + +LK     SL+++ +QY  ++ I 
Sbjct: 790  MKEHEQQVYEEKVRFLINISHELRTPLTLIHAPLSRILK-----SLSAEDTQYLPIKAIY 844

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              S  + NL+N +LD+  ++ G  KL      LN  +  V Q   ++    N+RI+   D
Sbjct: 845  RQSQRMKNLINMVLDVRKMEVGESKLQIQPYALNQWIEHVSQDFVSEGEAKNVRIRYQLD 904

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPE 732
             ++ +   D+ +   I S +L NA+  S + + + + +    +      S+ + G+ + +
Sbjct: 905  PQVNTVSFDKDKCEIILSNLLINALKHSPQDAEITITSELLSEKNSVRISIIDRGNGLKQ 964

Query: 733  DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               + +F RF      G++ G G+GLS     + LHGG +    + E   T    +P ++
Sbjct: 965  VNTQKLFTRFYQGT--GEQSGTGIGLSYSRILVELHGGSIGARDNQEAGATFFFELPLRQ 1022


>gi|227513041|ref|ZP_03943090.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227083798|gb|EEI19110.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
          Length = 498

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 126/250 (50%), Gaps = 7/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +TD      +L + N+ +++ +E +  F+   ++E+R+PLT I G  + +K   +     
Sbjct: 232 ITDFNHMTESLEKANQEIQRQEERRQEFLADAAHEMRTPLTTISGILEGIKYDVIPQ--E 289

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ + ++ +S  +  L+ LVN+ LD   + +  ++L         +L+ + + + +K  E
Sbjct: 290 QRGKSIDLMSNETQRLIRLVNENLDYEKIRSNSIRLEKRHFNATKVLSSIVEQLGSKASE 349

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           +    ++ +   L  + AD  R +QI   I +NA+ F+  G T+ L   R   + I  +K
Sbjct: 350 SKDHFEIQAPDNLPIY-ADYDRFVQIVFNITNNAIQFTDSG-TITLIGERGYNETIIRIK 407

Query: 725 NNGSSIPEDMCKSVFNRFV-SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  + ++  K++F R+  ++A R  R+    GLGL+IV   +  HGG +S++S     
Sbjct: 408 DTGIGMTKEQQKNIFERYYKADASRRARKYGESGLGLAIVHQLVQQHGGKISVASKPHKG 467

Query: 782 TTINCRIPSK 791
           T     IP +
Sbjct: 468 TAFTVIIPDQ 477


>gi|169343152|ref|ZP_02864177.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
 gi|169298790|gb|EDS80865.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
          Length = 791

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 128/242 (52%), Gaps = 14/242 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-- 601
           N+T   R E    +  EA +  ++I+N F  ++S+ELR+PL NII  T  L  SK  +  
Sbjct: 508 NLTSKKRLENLAIKFKEA-KAYEQIRNEFFANISHELRTPL-NIIYSTIQLLNSKHETDP 565

Query: 602 --LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              N+   +Y + +  +   +L L+N+++D++ ++ G +K +++     D++  V+  ++
Sbjct: 566 MDFNNFYDKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTN---RDIVFLVENIVS 622

Query: 660 TKM-HENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             + H  N  I +I D  +   +   D  ++ ++   +LSNA+ F+     + +     N
Sbjct: 623 LVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIFVDLNISN 682

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                S+K+NG  IP++M  S+F+RFV      +RR  G G+GLSIV+S   LH G + +
Sbjct: 683 DWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELHDGKIEL 742

Query: 775 SS 776
            S
Sbjct: 743 IS 744


>gi|83312029|ref|YP_422293.1| sensor protein barA [Magnetospirillum magneticum AMB-1]
 gi|82946870|dbj|BAE51734.1| Sensor protein barA [Magnetospirillum magneticum AMB-1]
          Length = 1248

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           +VT +     A     +A   A   K+ F+ ++S+E+R+P+  IIG   L LKT     L
Sbjct: 695 DVTQARATAEAQARAKDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTD----L 750

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  YV  I  S   LL ++NDILD + ++AG +++  + I L+ +L  V   I+ K 
Sbjct: 751 DPRQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKA 810

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
               + +   +  G     + D  RL Q+     +NA+ F+  G  V+ ++   D G  +
Sbjct: 811 TAKGLELLFDVGAGVPLDLMGDALRLGQVLINYANNAVKFTEAGEIVVAVRLMEDLGPDV 870

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  + ++    +F  F        R+  G GLGL+I +    L GG V + 
Sbjct: 871 MLRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVD 930

Query: 776 S 776
           S
Sbjct: 931 S 931


>gi|331268507|ref|YP_004394999.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329125057|gb|AEB75002.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 554

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 541 TFVNVTDSVRAERALTEKNE------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            F +VT+ +  E    + NE        R+ ++I+  F  ++S+EL++PL  I+    LL
Sbjct: 255 VFRDVTEYLEIENIKQKSNENKKLLDKEREFNKIRTEFFANLSHELKTPLNVILSSQQLL 314

Query: 595 ----KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               +  +   ++  K  ++++ +  +S  LL L+++++D+  +D+G   LN     +  
Sbjct: 315 ALYLRNGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLQNHNIVT 374

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++ ++  S+   +   +I++   +D +    + D  ++ +I   +LSNA+ F+ KG  + 
Sbjct: 375 IIEDITLSVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKGGRIK 434

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           +    D      +V++NG  IP+D    +F+RF  V  +      G G+GLS+V++ + +
Sbjct: 435 VNIHDDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDTSFTRISEGSGIGLSLVKALVEM 494

Query: 768 HGGHVSISSS 777
           H G +S+ S 
Sbjct: 495 HNGTISVESE 504


>gi|298241197|ref|ZP_06965004.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554251|gb|EFH88115.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 383

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 161/365 (44%), Gaps = 37/365 (10%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR-----NIAATCSRYYNES 494
           +D ++  +AV   +GR+ + N A+R   +      SP    R     N    C      S
Sbjct: 35  LDSVTVMMAVLDTNGRVHIVNEAWR---RQARESCSPDQLARTGIGMNYLDVCKHAQGTS 91

Query: 495 --DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY---SIIPLP-NAQTMLTFVNVTDS 548
             +  + FA I       + S        S +   +   S+ PLP NA  ++  +++T  
Sbjct: 92  AEEAPEAFAGIEAVLGGRQSSFTLEYPCFSSARQSWYLMSVTPLPGNAGAVVAHIDIT-- 149

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                   E+ E  ++ DE    F+   S+EL+SPLT +   +  L+     + +    Q
Sbjct: 150 --------ERKELEQRKDE----FISIASHELKSPLTALTLLSSHLRKKLTENDSFMAEQ 197

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  +      L  L+ND+LD++ + AG +        L+ L+NE+ ++       + + 
Sbjct: 198 MLTRMEGQVRTLTCLINDLLDVSKIQAGRLGYAKEPFDLDALINEIVETAQLTSPGHRLM 257

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNN 726
           I   S   +     DR +L Q+F  +LSNA+ +S +   V   L+  +D G F+  +++ 
Sbjct: 258 IHGASHATIS---GDRDKLGQVFINLLSNAIKYSPQADHVDISLETVQD-GAFV-RIQDV 312

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP++    +F RF  V  + +    G+GLGL I    I  HGG +++SS +   +  
Sbjct: 313 GIGIPKERQDRLFERFYRVDTSKQNDVPGLGLGLYIAREIIKHHGGEITVSSEEGKGSIF 372

Query: 785 NCRIP 789
           +  +P
Sbjct: 373 SVSLP 377


>gi|259416961|ref|ZP_05740881.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348400|gb|EEW60177.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 826

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 10/217 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  K  F+ ++S+E+R+P+  IIG  DLL  +   +L  +Q QYV+ I  SS  LL ++N
Sbjct: 448 DRTKTEFLANMSHEIRTPMNGIIGMADLLSET---ALPEEQEQYVQIIRTSSKALLKIIN 504

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DILDL  +++G + L      L   +      +     E  + + V     L   V AD 
Sbjct: 505 DILDLTRMESGKLSLEPVDFDLERCIESAVDILRPVAREKGLTLNVNYATDLPKSVRADD 564

Query: 685 QRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            R+ QI   ++ NA+ F++ G     +L+A  D       V+++G  + +    ++F+RF
Sbjct: 565 GRVRQILVNLVGNAVKFTASGRVDVRVLRAQSDPYRLTIDVQDSGIGMSQAQLNNIFDRF 624

Query: 743 VSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            S A     R   G GLGL+I         G +++ S
Sbjct: 625 -SQADAATTRSFGGTGLGLTISRLLAQQMQGDITVHS 660


>gi|228926592|ref|ZP_04089661.1| hypothetical protein bthur0010_13080 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832968|gb|EEM78536.1| hypothetical protein bthur0010_13080 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 603

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 142/293 (48%), Gaps = 33/293 (11%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----A 551
            +D    +  + DDE   L G++  LS                    VN+ D +     A
Sbjct: 324 NFDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVA 363

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   + Y +
Sbjct: 364 NTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGISKDTTYYTD 419

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   +  +  L+ ++L+LA +++G  KL+ +T  + +L+ +V   +   M E ++++ +
Sbjct: 420 VILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELIQQVYTKLLFSMEEKHLQVNI 479

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             D     FV A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ I
Sbjct: 480 --DVNSSIFVKANRSRIEQVVVNLLSNAIRYTPEGEKIQVSVITMEDTVKIEIENTGNPI 537

Query: 731 PEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           PE+  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 538 PEESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 590


>gi|227326661|ref|ZP_03830685.1| aerobic respiration control sensor protein ArcB [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 788

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 34/247 (13%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   L+ +Q +Y
Sbjct: 264 RDITERKRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLDTQ---LDPEQQKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV----------LNDLLNEVKQSIA 659
           ++ I  S+  L N+ ND++++   +   ++L+   I           L  LL E K    
Sbjct: 321 LKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLENLGGLLAEPKGLKL 380

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAAR 714
                  +  KV++DG          RL QI   +LSNA+ F+ KG       ++++   
Sbjct: 381 IMDQHQPLPQKVMTDGT---------RLRQILWNLLSNAVKFTPKGENGKKGEIVVRVWH 431

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGG 770
           + GD + F V+++G  IP D  + +F  +  V + H G+   G G+GL++ +      GG
Sbjct: 432 EKGDRLRFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGTGIGLAVSKRLAQNMGG 491

Query: 771 HVSISSS 777
            + +SS+
Sbjct: 492 DIQVSST 498


>gi|167765965|ref|ZP_02438018.1| hypothetical protein CLOSS21_00456 [Clostridium sp. SS2/1]
 gi|167712322|gb|EDS22901.1| hypothetical protein CLOSS21_00456 [Clostridium sp. SS2/1]
          Length = 658

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 114/216 (52%), Gaps = 5/216 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK   L K ++++   ++ +S++LR+PL +I G  D+L  S     +  + Q    I   
Sbjct: 419 EKISVLAKNEQLRADLLRAISHDLRTPLCSISGNADMLLNSGERLDDITKHQIYTDIYDD 478

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L+N+V ++L +  ++ G +KL ++  +L++++ E  + I+ K  E  I   V    +
Sbjct: 479 SEWLINIVENLLSITRLNDGRLKLKFTDQLLDEVIAESLRHISRKHEEYQI---VTECDE 535

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L     D + +LQ+   ++ NA+ ++ KGST+ + A  +NG     V++NG  I ++M  
Sbjct: 536 LILAHMDVRLILQVLINLVDNAIKYTPKGSTIRICAMNENGKAKIQVEDNGPGICDEMKP 595

Query: 737 SVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGG 770
            +F  F +  N      R +GLGL++  S I +H G
Sbjct: 596 HIFEMFYTGKNTIADSHRSLGLGLALCRSIIEVHNG 631


>gi|160942673|ref|ZP_02089916.1| hypothetical protein FAEPRAM212_00145 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446028|gb|EDP23031.1| hypothetical protein FAEPRAM212_00145 [Faecalibacterium prausnitzii
           M21/2]
          Length = 509

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 113/226 (50%), Gaps = 4/226 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   +  E ++  D  +  F+ ++++ELR+P+T I GF D +    +      Q+ Y++ 
Sbjct: 241 RTFNQMAENIQSNDNSQGQFMGNIAHELRTPMTTIKGFVDGILDGTIPP--EMQNHYLQL 298

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S  +  L  L+ ++LDL+ +++G  ++N     + + L  V  +   ++++  I ++ +
Sbjct: 299 VSEETGRLARLIQNMLDLSKLESGEYQVNARMFNIWETLTGVALAAEQRINDGMIELEGL 358

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  +     AD   + Q+   +L NA+ F+  G T+     +   +   S+ N+G  I  
Sbjct: 359 TMDEKVLVYADPDLIHQVAYNLLDNAIKFTPAGGTIRFSVEKLGPEAEISIWNSGQGISP 418

Query: 733 DMCKSVFNRFV-SNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776
           +    VF RF   +  RG   RG GLGL+I +  +NL GG + + S
Sbjct: 419 EALPYVFERFYKEDRSRGLHARGSGLGLNICKVLVNLAGGQIRVES 464


>gi|154490871|ref|ZP_02030812.1| hypothetical protein PARMER_00788 [Parabacteroides merdae ATCC
           43184]
 gi|167762746|ref|ZP_02434873.1| hypothetical protein BACSTE_01104 [Bacteroides stercoris ATCC
           43183]
 gi|189461182|ref|ZP_03009967.1| hypothetical protein BACCOP_01829 [Bacteroides coprocola DSM 17136]
 gi|189464474|ref|ZP_03013259.1| hypothetical protein BACINT_00816 [Bacteroides intestinalis DSM
           17393]
 gi|198277331|ref|ZP_03209862.1| hypothetical protein BACPLE_03543 [Bacteroides plebeius DSM 17135]
 gi|212692134|ref|ZP_03300262.1| hypothetical protein BACDOR_01629 [Bacteroides dorei DSM 17855]
 gi|218131443|ref|ZP_03460247.1| hypothetical protein BACEGG_03061 [Bacteroides eggerthii DSM 20697]
 gi|255012135|ref|ZP_05284261.1| truncated tetracycline resistance element regulator RteA
           [Bacteroides fragilis 3_1_12]
 gi|255016392|ref|ZP_05288518.1| truncated tetracycline resistance element regulator RteA
           [Bacteroides sp. 2_1_7]
 gi|262406726|ref|ZP_06083275.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|265766705|ref|ZP_06094534.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|282859281|ref|ZP_06268397.1| sensor histidine kinase/response regulator [Prevotella bivia
           JCVIHMP010]
 gi|294807383|ref|ZP_06766189.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298377032|ref|ZP_06986986.1| two component system sensor kinase [Bacteroides sp. 3_1_19]
 gi|298483553|ref|ZP_07001729.1| two component system sensor kinase [Bacteroides sp. D22]
 gi|313149976|ref|ZP_07812169.1| tetracycline resistance element regulator RteA [Bacteroides
           fragilis 3_1_12]
 gi|319644398|ref|ZP_07998852.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|329960033|ref|ZP_08298529.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|46242801|gb|AAS83506.1| RteA [Bacteroides fragilis]
 gi|154088619|gb|EDN87663.1| hypothetical protein PARMER_00788 [Parabacteroides merdae ATCC
           43184]
 gi|167699086|gb|EDS15665.1| hypothetical protein BACSTE_01104 [Bacteroides stercoris ATCC
           43183]
 gi|189432096|gb|EDV01081.1| hypothetical protein BACCOP_01829 [Bacteroides coprocola DSM 17136]
 gi|189438264|gb|EDV07249.1| hypothetical protein BACINT_00816 [Bacteroides intestinalis DSM
           17393]
 gi|198269829|gb|EDY94099.1| hypothetical protein BACPLE_03543 [Bacteroides plebeius DSM 17135]
 gi|212665255|gb|EEB25827.1| hypothetical protein BACDOR_01629 [Bacteroides dorei DSM 17855]
 gi|217986375|gb|EEC52712.1| hypothetical protein BACEGG_03061 [Bacteroides eggerthii DSM 20697]
 gi|262355429|gb|EEZ04520.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|263253082|gb|EEZ24558.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|282587946|gb|EFB93135.1| sensor histidine kinase/response regulator [Prevotella bivia
           JCVIHMP010]
 gi|294445403|gb|EFG14064.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298266016|gb|EFI07675.1| two component system sensor kinase [Bacteroides sp. 3_1_19]
 gi|298270310|gb|EFI11895.1| two component system sensor kinase [Bacteroides sp. D22]
 gi|313138743|gb|EFR56103.1| tetracycline resistance element regulator RteA [Bacteroides
           fragilis 3_1_12]
 gi|313158485|gb|EFR57879.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
 gi|317384118|gb|EFV65093.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|328533167|gb|EGF59936.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 772

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD +R      ++NEAL  +   +   V  +++ELR+PLT I G+  L++  +      K
Sbjct: 280 TDLIRQLEQSVQRNEALITS---RKKAVHTITHELRTPLTAITGYAGLIRKEQC---EDK 333

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QY++ I  SS  + +++N +LD   +D G  +   S   ++ + + ++          
Sbjct: 334 SGQYIQNILQSSDRMRDMLNTLLDFFRLDNGKEQPRLSPCRISAITHTLETEFMPVAVNK 393

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + + V + G     + D++R++QI + +LSNA+ F+ +G  V L    DNG     V++
Sbjct: 394 GLSLSVKT-GHDAIVLTDKERIIQIGNNLLSNAVKFTEEGG-VSLITEYDNGVLTLVVED 451

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G+ + E+  K  F  F   ++   + G GLGL+I+ + +++ GG + + S
Sbjct: 452 TGTGMTEEEQKQAFGAFERLSNAAAKEGFGLGLAIMRNIVSMLGGTIRLDS 502


>gi|1122445|gb|AAC49124.1| ethylene receptor [Solanum lycopersicum]
 gi|52222392|gb|AAU34075.1| ethylene receptor neverripe [Solanum lycopersicum]
 gi|1586409|prf||2203452A never-ripe gene
          Length = 635

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 130/268 (48%), Gaps = 36/268 (13%)

Query: 547 DSVRAERALTEKNEAL---RKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           DS+RA   L E+N AL   R+  E+    +N F+  +++E+R+P+  +I    LL  +  
Sbjct: 314 DSMRAHDQLMEQNIALDVARQEAEMAIRARNDFLAVMNHEMRTPMHAVIALCSLLLET-- 371

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q   +E I  SS +L  L+ND+LDL+ ++ GI++L   T  L+ +L E    I 
Sbjct: 372 -DLTPEQRVMIETILKSSNLLATLINDVLDLSRLEDGILELENGTFNLHGILREAVNLIK 430

Query: 660 --TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG------STVILK 711
               + + +I + +  D  + + V D +RL+Q    +  NA+ F+ +G      S    +
Sbjct: 431 PIASLKKLSITLALALDLPILA-VGDAKRLIQTLLNVAGNAVKFTKEGHISIEASVAKPE 489

Query: 712 AARD-----------NGDFIF--SVKNNGSSI-PEDMCKSVFNRFVSNAHRGQRR--GVG 755
            ARD           +G F     V++ G  I P+D+   VF +F  +     R   G G
Sbjct: 490 YARDCHPPEMFPMPSDGQFYLRVQVRDTGCGISPQDI-PLVFTKFAESRPTSNRSTGGEG 548

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTT 783
           LGL+I   FI L  G++ I S   G  T
Sbjct: 549 LGLAICRRFIQLMKGNIWIESEGPGKGT 576


>gi|329851158|ref|ZP_08265915.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840004|gb|EGF89576.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 1409

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 18/237 (7%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            R+ + I++ FV   S+ELR+PLT I G   +L       L     + V+    +S  LL 
Sbjct: 1172 REMEHIQSEFVSVASHELRTPLTAIHGSLGMLAGPMASQLPETAGRMVDLAHRNSERLLG 1231

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATK----MHENNIRIKVISDG 675
            LVNDILD+  + +G M+ +     L +L+    E  Q  A +    MH + +      D 
Sbjct: 1232 LVNDILDIDKLTSGQMRFDMQVESLAELVAQSVEANQPFADRYGVSMHLSPV------DA 1285

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
             L + + D  R  Q+ + +LSNA  FS +   + +    ++G    +V ++G  IPE   
Sbjct: 1286 GLRARL-DGDRFAQVMANLLSNAAKFSHREGRIDIDVQIESGQVRITVTDHGVGIPEAFR 1344

Query: 736  KSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F RF S A     R   G GLGL I    +   GG +   S +   T+   ++P
Sbjct: 1345 GKIFERF-SQADSSMTRNKGGTGLGLYIARQMVERMGGQLGFDSVEGEGTSFWIKLP 1400


>gi|268609559|ref|ZP_06143286.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus flavefaciens FD-1]
          Length = 481

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 120/229 (52%), Gaps = 5/229 (2%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           ++E   +F+ +VS+ELR+P+T I GF D +    +    ++Q++Y+  +S     L  L+
Sbjct: 249 SEETSKTFIANVSHELRTPMTTIGGFVDGILDGTIP--KTRQNEYLILVSKEIKRLRILI 306

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           + +L+++  ++G +  N+    L DL+ +       K+ + +I ++ +   ++ + V D 
Sbjct: 307 SSMLNMSRFESGTLSPNFKETNLTDLVIQTVLMFEKKIDDKHIEVEGLGSPRIDAEV-DA 365

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV- 743
             + Q+   ++ NA+ F ++  T+  +  + +G     +KN G  +  +    VF+RF  
Sbjct: 366 DLIQQVIYNLVENAVKFINERGTLSFRFEKLDGMVTIGIKNTGEGLTNEEITQVFDRFYK 425

Query: 744 SNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +++ RG+   G+GLGLSI    ++LH GH+ + S     T     IP K
Sbjct: 426 TDSSRGKDTTGLGLGLSISRKIVHLHDGHIVVKSVYNEYTEFLVEIPEK 474


>gi|228951938|ref|ZP_04114036.1| hypothetical protein bthur0006_13520 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807861|gb|EEM54382.1| hypothetical protein bthur0006_13520 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 604

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 141/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ + 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNID 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++ +G  + +            ++N G+ IPE
Sbjct: 482 ADPSI-LVKANRSRIEQVVVNLLSNAIRYTPEGEKIQVSIIEAEDTVKVEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|168206570|ref|ZP_02632575.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170661961|gb|EDT14644.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
          Length = 791

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 128/242 (52%), Gaps = 14/242 (5%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-- 601
           N+T   R E    +  EA +  ++I+N F  ++S+ELR+PL NII  T  L  SK  +  
Sbjct: 508 NLTSKKRLENLAIKFKEA-KAYEQIRNEFFANISHELRTPL-NIIYSTIQLLNSKHETDP 565

Query: 602 --LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              N+   +Y + +  +   +L L+N+++D++ ++ G +K +++     D++  V+  ++
Sbjct: 566 MDFNNFYDKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTN---RDIVFLVENIVS 622

Query: 660 TKM-HENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             + H  N  I +I D  +   +   D  ++ ++   +LSNA+ F+     + +     N
Sbjct: 623 LVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIFVDLNISN 682

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                S+K+NG  IP++M  S+F+RFV      +RR  G G+GLSIV+S   LH G + +
Sbjct: 683 DWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELHDGKIEL 742

Query: 775 SS 776
            S
Sbjct: 743 IS 744


>gi|163802031|ref|ZP_02195927.1| sensor histidine kinase [Vibrio sp. AND4]
 gi|159174172|gb|EDP58980.1| sensor histidine kinase [Vibrio sp. AND4]
          Length = 806

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E+ +AL   +  K +F+  +S+E+R+P+  ++G   +L  ++L   N +Q +Y+  +  S
Sbjct: 342 ERAKALASTNA-KTAFLATLSHEIRTPMNGVLGTAQILLKTRL---NEEQRKYLNTLYDS 397

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              ++ L+N+ILD + ++ G ++++ +   ++ +L  +     +   E  +  +VIS+  
Sbjct: 398 GDHMMTLLNEILDYSKIEQGHIEIDNTPFPIDSILGSINSIYDSLCAEKGLEFRVISNVP 457

Query: 677 LGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPE 732
            G  +  D+ RL Q+   +++NA+ F+ +G   +    + +GD      SVK+ G  I  
Sbjct: 458 EGRWYNNDKARLRQVLFNLINNAVKFTDQGYVEVELTEQVSGDQTHLYISVKDTGIGIRP 517

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           D  K +F  F        RR  G GLGL+IV+   +  GG V++ S +
Sbjct: 518 DAQKRIFRPFEQAESSTTRRYGGTGLGLAIVKQISDHMGGSVTVQSQE 565


>gi|218767731|ref|YP_002342243.1| putative two-component system sensor kinase [Neisseria meningitidis
           Z2491]
 gi|121051739|emb|CAM08043.1| putative two-component system sensor kinase [Neisseria meningitidis
           Z2491]
          Length = 468

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 14/219 (6%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L K    +   + HVS+E+RSPL  +     L++         KQ QY++ +    T 
Sbjct: 228 EKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQP-----QKQEQYLKRLEGELTR 282

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN---EVKQSIATKMHENNIRIKVISDGK 676
           +  L  ++L L+ ++   M L   ++ L   L    E  QSIA K   N   + + +DGK
Sbjct: 283 MDTLAGELLTLSRLETSNMALEKESLKLLPFLGNLVEDNQSIAQK---NGQTVTLSADGK 339

Query: 677 LG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +    + +A+   L + F  ++ NA+++S +GST+++   +D+  +I  V +NG  + E 
Sbjct: 340 IPENTTILANESYLYRAFDNVIRNAVNYSPEGSTILINIGQDHKHWIIDVTDNGPGVDEM 399

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
               +F  F        + G GLGL++ +  I  H G +
Sbjct: 400 QLPHIFTAFYRADSSANKPGTGLGLALTQHIIEQHCGKI 438


>gi|315921776|ref|ZP_07918016.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313695651|gb|EFS32486.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1315

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 186/420 (44%), Gaps = 76/420 (18%)

Query: 396  NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            NG++++  +T+ P G +     N+T+++  + K     KV    I+ L+        D +
Sbjct: 656  NGESVNNELTNRPTGISAPWNSNITIRIMSKEKDIFRQKVYRYQIEGLN--------DQQ 707

Query: 456  IKLSNP--AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERK 512
            I+  NP  A RSL         PG++   I A+C+      DG W               
Sbjct: 708  IESYNPELAIRSL--------PPGSY--KIMASCT----AKDGSW--------------- 738

Query: 513  SLQGTLELLSDSVLEYSIIP-------LPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                   + S  VLE +I+P          + T+LT   + ++ R  R L  K E L+ A
Sbjct: 739  -------IPSQEVLELTILPPWYRTWWFILSCTVLTAAAIIETFR--RTLKRKEEKLKWA 789

Query: 566  --------DEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQY--VEYIS 614
                     E K  F+ ++S+ELR+PLT I    + +LK     SL+++ +QY  ++ I 
Sbjct: 790  MKEHEQQVYEEKVRFLINISHELRTPLTLIHAPLSRILK-----SLSAEDTQYLPIKAIY 844

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              S  + NL+N +LD+  ++ G  KL      LN  +  V Q   ++    N+RI+   D
Sbjct: 845  RQSQRMKNLINMVLDVRKMEVGESKLQIQPYALNQWIEHVSQDFVSEGEAKNVRIRYQLD 904

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPE 732
             ++ +   D+ +   I S +L NA+  S + + + + +    +      S+ + G+ + +
Sbjct: 905  PQVNTVSFDKDKCEIILSNLLINALKHSPQDAEITITSELLSEKNSVRISIIDRGNGLKQ 964

Query: 733  DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               + +F RF      G++ G G+GLS     + LHGG +    + E   T    +P ++
Sbjct: 965  VNTQKLFTRFYQGT--GEQSGTGIGLSYSRILVELHGGSIGARDNQEAGATFFFELPLRQ 1022


>gi|304410179|ref|ZP_07391798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307302110|ref|ZP_07581868.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304351588|gb|EFM15987.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306914148|gb|EFN44569.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 933

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 13/230 (5%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISAS 616
           K  AL +A  IK+ F+ ++S+ELR+PL  +IGF   L+KT     L+S Q  Y++ I  S
Sbjct: 289 KKRAL-EASRIKSEFLANMSHELRTPLNGVIGFARQLVKTP----LHSSQVDYIKTIERS 343

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDG 675
           +T LL ++NDILD + ++AG M L      L + + +    I+       + + V I+  
Sbjct: 344 ATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPN 403

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIP 731
              +   D  R+ QI + ++ NA+ F+  GS ++   L++  +    +   V + G  I 
Sbjct: 404 VPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGID 463

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           E     +F  F        RR  G GLGL I +  +N  GG +  +SS E
Sbjct: 464 ESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPE 513


>gi|291558759|emb|CBL37559.1| Osmosensitive K+ channel histidine kinase [butyrate-producing
           bacterium SSC/2]
          Length = 658

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 114/216 (52%), Gaps = 5/216 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           EK   L K ++++   ++ +S++LR+PL +I G  D+L  S     +  + Q    I   
Sbjct: 419 EKISVLAKNEQLRADLLRAISHDLRTPLCSISGNADMLLNSGERLDDITKHQIYTDIYDD 478

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L+N+V ++L +  ++ G +KL ++  +L++++ E  + I+ K  E  I   V    +
Sbjct: 479 SEWLINIVENLLSITRLNDGRLKLKFTDQLLDEVIAESLRHISRKHEEYQI---VTECDE 535

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L     D + +LQ+   ++ NA+ ++ KGST+ + A  +NG     V++NG  I ++M  
Sbjct: 536 LILAHMDVRLILQVLINLVDNAIKYTPKGSTIRICAMNENGKAKIQVEDNGPGICDEMKP 595

Query: 737 SVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGG 770
            +F  F +  N      R +GLGL++  S I +H G
Sbjct: 596 HIFEMFYTGKNTIADSHRSLGLGLALCRSIIEVHNG 631


>gi|219852596|ref|YP_002467028.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219546855|gb|ACL17305.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 761

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 124/255 (48%), Gaps = 13/255 (5%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +++T+  + E    E  E L  ++E    +    S++L+ PL +I+ F++LL     G 
Sbjct: 507 LLDITERKQFEATQEEYAEKLMASNEELQRYAYVASHDLQEPLRSIVSFSELLNRRYRGK 566

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL---NYSTIVLNDLLNEVKQSI 658
           L+    +Y+ +I      + NL+ D+L ++ ++         +  T+V + +     +S+
Sbjct: 567 LDKDADEYIRFIVDGGVRMQNLIKDLLQVSRIETQAQPFAPTDARTVVADSI-----RSL 621

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNG 717
            T +HE +    V++   L   +AD  +L Q+F+ ++ NA+ +   +   VI  +A   G
Sbjct: 622 ETPIHEIS---AVVTVDPLPIVMADPSQLEQVFTNLIGNAIKYRRPEVPPVITISAERYG 678

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           D+  FSV++NG  I  +    +F  F       +  G G+GL+IV+  +  HGG + + S
Sbjct: 679 DWWEFSVRDNGIGIESEFFDRIFEMFRRLHTIDEYEGTGIGLAIVKRIVERHGGRIRVES 738

Query: 777 SDEGVTTINCRIPSK 791
                +T    +P++
Sbjct: 739 KPGEGSTFFFTLPNE 753


>gi|166850504|gb|ABY91232.1| FitF [Pseudomonas fluorescens]
          Length = 1056

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 13/258 (5%)

Query: 535 NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            A T +T V  ++++    E  + +      +A + K+ F+  +S+E+R+PL  IIG   
Sbjct: 436 GAPTRVTGVLQDISERKAVEAQIQQSRHDAERATQAKSEFLDCMSHEIRTPLNAIIGMAH 495

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L     L  +   Q  Y+E I  ++  L+  +N +LDL+ ++AG + +      L +L++
Sbjct: 496 LALDLPLEPV---QRDYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRELVD 552

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-- 709
           +V   +  +  E  +R+++     L   +V D  RL Q+ + ++ NA+ F+  G   I  
Sbjct: 553 DVLLLVRQRAEEKALRLQLDIPASLPRRYVGDPLRLAQVLTNLVDNAIKFTEAGHVCIGV 612

Query: 710 --LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
             ++         FSV + G  I ++    +FN FV       RR  G GLGL+I +  +
Sbjct: 613 CLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISKKIV 672

Query: 766 NLHGGHVSI-SSSDEGVT 782
            L  G + + S   +G T
Sbjct: 673 QLMQGDIWVKSQPGQGAT 690


>gi|52425785|ref|YP_088922.1| BaeS protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307837|gb|AAU38337.1| BaeS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 614

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R  T   + L +A   K + +  +S+ELR+PL  I+G + +L  SKL     +Q  Y++ 
Sbjct: 99  RERTTAEQRLAQAIRDKTTLMATISHELRTPLNGIVGLSRILLDSKL---TEEQYNYLKT 155

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S+  L ++ NDI+DL  +D   ++L       + L+ +V         + +++  + 
Sbjct: 156 INVSAVSLGHIFNDIIDLEKLDGSRIELYKKETDFHALITDVYNVAQLMAEQKHLKFILQ 215

Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSI 730
            D  L +++  D  RL Q+   ++SNA+ F+ KG TV LK +R     + F++ + G  I
Sbjct: 216 VDKDLPNWLLLDYTRLSQVLWNLISNAVKFTDKG-TVTLKISRLSENRYAFAISDTGPGI 274

Query: 731 PEDMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           PE+    +F  +    +N ++ +  G G+GL+I +S   L  G + + S
Sbjct: 275 PENELNKIFTMYYQVKANFNKHKAAGSGIGLAISKSIARLMNGDLVVES 323


>gi|86144427|ref|ZP_01062759.1| Signal transduction histidine kinase [Vibrio sp. MED222]
 gi|85837326|gb|EAQ55438.1| Signal transduction histidine kinase [Vibrio sp. MED222]
          Length = 857

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 17/257 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  + AER      E       ++  F+  +S+E+R+PL  I+G + LLK S     N
Sbjct: 454 DITKLIEAERQADRAREEAEHLASVRADFLAKMSHEIRTPLNGILGVSQLLKRSIHDEDN 513

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   V+ +  S+  LL ++NDILD + ++ G   +     +L +L+N +         
Sbjct: 514 RDQ---VDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQKKDFLLGELVNTLDSIYRPLCE 570

Query: 664 ENNIRIKVIS----DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----- 714
           + ++   +++    D K+ +   D+ RL QI   +LSNA+ F+ +GS  +          
Sbjct: 571 DKSVEFTIVNHLVDDIKIHT---DQVRLNQIMFNLLSNALKFTHQGSISVSFEIESILNT 627

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D    I  VK++G  I E    ++F  FV       R   G GLGL+IV++ +++  G +
Sbjct: 628 DYASLIVRVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGSGLGLTIVKNLVDMLEGDI 687

Query: 773 SISSSDEGVTTINCRIP 789
            + S  +  +     IP
Sbjct: 688 QVRSVKDQGSEFIVEIP 704


>gi|148253661|ref|YP_001238246.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1]
 gi|146405834|gb|ABQ34340.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1]
          Length = 786

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 181/431 (41%), Gaps = 57/431 (13%)

Query: 395 PNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDL-ETKYNTLVKVQG-----ETIDHLSEGV 447
           PNGQ   V + +N       +F E   +  D+ E K   +   Q      + I+ L+ G 
Sbjct: 188 PNGQVRWVRIEANASDEADGVFRERFGIVQDITERKLAEINADQARLLLMDAIESLTNGF 247

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-------------IRNIAATCSRYYNES 494
            +F  D R  +SN  FR ++      + PG               IR+       +    
Sbjct: 248 VLFDKDDRFVMSNTMFREMFPAWTVLMKPGISFTELMRRAYEHGLIRSKGDRFEEWLARK 307

Query: 495 DGWDLFAAIITSFD----------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
             W L  + +              D R S  GT+ L++D +  +  +     Q  L +V 
Sbjct: 308 TAWHLGGSRMIEHRELNGRWIQSVDHRISDGGTVCLVTD-ITAFKTVQAELEQK-LAYV- 364

Query: 545 VTDSVRAERALTEKNEALRKAD------------EIKNSFVQHVSYELRSPLTNIIGFTD 592
             +++R++     +    R A+              K+ F+  +S+E+R+PL+ ++G  D
Sbjct: 365 --EAIRSDLEQQTQELEARGAELRAARDAAEAANRAKSDFLAIMSHEIRTPLSGMVGMVD 422

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   SL+ +Q +Y      S+ +LL ++NDILD + ++AG ++       + +L+ 
Sbjct: 423 LLRGT---SLSEEQKRYTALAKESADLLLEVINDILDFSKLEAGRLQSECIDFDVPNLVE 479

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                +  K     + +KV ++ G       D  R+ Q+   ++ NA+ F+ +GS  +  
Sbjct: 480 SAVSFMGEKARRRGLDLKVSLAPGLPQYLEGDPTRIRQVMLNLVGNAIKFTEQGSIEVRA 539

Query: 712 AAR--DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           + R  D G  D    V + G  +  ++   +F+ FV       R+  G GLGL+I     
Sbjct: 540 SHRQLDGGVVDLRIEVIDTGIGMSPEILAQIFDPFVQADTSISRKYGGSGLGLAICRQLC 599

Query: 766 NLHGGHVSISS 776
            + GG + + S
Sbjct: 600 TIMGGSIGVDS 610


>gi|258513816|ref|YP_003190038.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777521|gb|ACV61415.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 386

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ +A   A++ KN  V ++++++++PLT++IG+  LL  +       ++++YV    
Sbjct: 143 LEKQKKAALDAEQRKNDLVVYLAHDIKTPLTSVIGYLSLLDEAP-DMPPEQKAKYVGITL 201

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
             +  L  L+N+  ++   +   + LN   I L  +L ++       +     R+ V + 
Sbjct: 202 EKAYRLEQLINEFFEITRFNLQTIVLNREKINLLFMLQQMADEFYPILTPQEKRVSVNVP 261

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           DG +     D  +L ++F+ IL NA+ +S + S + + A +   + + +  N G+ IP +
Sbjct: 262 DGLI--LWGDADKLARVFNNILKNAIAYSYENSVIDISAKQQEKNIVITFNNQGNPIPRE 319

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +++F +F  +  +      G GLGL+I +  +N HGG++ + S+ E  T      P K
Sbjct: 320 KLETIFEKFFRLDTSRSTNTGGAGLGLAIAKEIVNAHGGNIFVQSNTEK-TVFTVVFPQK 378

Query: 792 E 792
           +
Sbjct: 379 Q 379


>gi|296127492|ref|YP_003634744.1| multi-sensor signal transduction histidine kinase [Brachyspira
           murdochii DSM 12563]
 gi|296019308|gb|ADG72545.1| multi-sensor signal transduction histidine kinase [Brachyspira
           murdochii DSM 12563]
          Length = 585

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 139/265 (52%), Gaps = 29/265 (10%)

Query: 526 LEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E +IIP+ N +    ++ F +VTD              +RK +  K  F  + S+EL++
Sbjct: 325 IEITIIPIRNNENISALIKFEDVTD--------------IRKVEIEKQDFFINASHELKT 370

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT+IIG+++LL  +  G     Q+ +++ I+  +  + +LV D+L L+ ++A   +   
Sbjct: 371 PLTSIIGYSELLIATGGGK---NQADFIKRINNEALRMKDLVIDMLTLSRIEANWKETID 427

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             I + D++ +V +S   K  +  I I++  D +    +A+++++ ++ + ++ NA+ ++
Sbjct: 428 EKIDIKDIILDVFESNKIKAEQREINIEL--DIESAFIMANKEKITEVVNNLVDNAIKYT 485

Query: 703 SKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
             G +V   LK   D    +F+VK+ G  I       +F RF  V N    +  G GLGL
Sbjct: 486 DDGGSVKVFLKQKADKA--VFTVKDTGCGIAPQYLNRIFERFFRVKNNKYLKVHGTGLGL 543

Query: 759 SIVESFINLHGGHVSISSSDEGVTT 783
           +IV++  N +  ++ I  S+E V T
Sbjct: 544 TIVKNICNYYNANIHI-KSEENVGT 567


>gi|317479081|ref|ZP_07938222.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904737|gb|EFV26550.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 626

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 558 KNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           + EA++    +A + KN F+ ++S+E+R+PL  I+GF+ +L        +  + ++ E I
Sbjct: 381 RQEAMKEKAVQAIQRKNMFLSNMSHEVRTPLNAIVGFSAVLTDEDESFDDESRREFSEII 440

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S  LL L+NDILD +  +   +  N  T     L NEV   + T M    + +++  
Sbjct: 441 KVNSFQLLKLINDILDFSDFENDNITFNIRTHDAVKLCNEV---VETVMASRKLEVEMRF 497

Query: 674 DGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           D  L   +   D  RL Q+   +L NA  F+ +GS V+     D G  +FSV + G  IP
Sbjct: 498 DTDLSVLMLDTDDARLRQVLINLLVNAAKFTEQGSIVLELKMVDAGTALFSVTDTGCGIP 557

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +    +F RF       Q  G GLGLSI +  +    G + + S
Sbjct: 558 PEKQHLIFERFEKLNDFVQ--GSGLGLSICQLIVKYMNGKLWVDS 600


>gi|269967966|ref|ZP_06182005.1| sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|269827402|gb|EEZ81697.1| sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 811

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 11/227 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           K +F+  +S+E+R+P+  ++G    LLKT     L  +Q +++  +  S   ++ L+N+I
Sbjct: 358 KTAFLATLSHEIRTPMNGVLGTAQILLKTP----LTDEQRKHLRTLYDSGDHMMTLLNEI 413

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++ G ++       +  ++  +K    T   E  +R +V+S    G  +  D+ R
Sbjct: 414 LDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLRFRVVSHLPTGRWYNNDKAR 473

Query: 687 LLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           L Q+   +L+NA+ F+ +G   +    ++++     I  VK+ G  I ++  K +F  F 
Sbjct: 474 LRQVLFNLLNNAVKFTDRGIVEVELAEQSSKAGTKLILKVKDTGIGISKEAQKRIFRPFE 533

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  RR  G GLGL+IV+      GG V + S ++  TT    I
Sbjct: 534 QAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAGTTFTVEI 580


>gi|265751737|ref|ZP_06087530.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236529|gb|EEZ21999.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 772

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD +R      ++NEAL  +   +   V  +++ELR+PLT I G+  L++  +      K
Sbjct: 280 TDLIRQLEQSVQRNEALITS---RKKAVHTITHELRTPLTAITGYAGLIRKEQC---EDK 333

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QY++ I  SS  + +++N +LD   +D G  +   S   ++ + + ++          
Sbjct: 334 SGQYIQNILQSSDRMRDMLNTLLDFFRLDNGKEQPRLSPCRISAITHTLETEFMPVAVNK 393

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + + V + G     + D++R++QI + +LSNA+ F+ +G  V L    DNG     V++
Sbjct: 394 GLSLSVKT-GHDAIVLTDKERIIQIGNNLLSNAVKFTEEGG-VSLITEYDNGVLTLVVED 451

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            G+ + E+  K  F  F   ++   + G GLGL+I+ + +++ GG + + S
Sbjct: 452 TGTGMTEEEQKQAFGAFERLSNAAAKEGFGLGLAIMRNIVSMLGGTIRLDS 502


>gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 17/233 (7%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +NEA R A ++K  F+ ++S+E+R+PL  I G   L++      L+ KQ++ ++ +  +S
Sbjct: 464 RNEAERLA-QVKAQFLANMSHEIRTPLNAIGGMAHLIRRQ---GLSEKQTRQMDSLERAS 519

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+++N IL+L+ +DAG + L    + +  L++EV      +  + +I ++     + 
Sbjct: 520 AHLLSVINSILELSKIDAGALHLASEPVSVTSLVHEVIDLQRQQATDKHITLRCELALRT 579

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPED 733
            ++V D  RL Q     +SNA+ F+  G+ +I     D    +    F V++ G  I  D
Sbjct: 580 DAWVGDPTRLRQALLNYVSNAIKFTGSGAVLIRVDPVDEDAASALIRFEVQDTGIGISPD 639

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
               +F  F    N+H  Q  G GLGL+I        GG       D G T++
Sbjct: 640 AMPRLFKAFEQADNSHTRQYGGTGLGLAITRMVARQMGG-------DSGATSL 685


>gi|163792793|ref|ZP_02186770.1| histidine kinase response regulator hybrid protein [alpha
           proteobacterium BAL199]
 gi|159182498|gb|EDP67007.1| histidine kinase response regulator hybrid protein [alpha
           proteobacterium BAL199]
          Length = 417

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 11/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L     A   AD  K+ F+ H+S+ELR+PL  +IGF D+L+    G +  +    VE IS
Sbjct: 171 LARAKMAAEMADRAKSEFLAHMSHELRTPLNAVIGFADMLRLQLHGPMLPQYLDSVETIS 230

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+L+ND+LDLA ++AG ++L    + L  L +   + +        I +++  +
Sbjct: 231 TSGRHLLDLINDLLDLARIEAGAIELQTEPVELAALAHATARMLEPLADGRGIGMRI--E 288

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPE 732
           G+ G  V ADR+ + Q+   I+ NA+ F  + S +I+  +  +GD +   V++ G  +  
Sbjct: 289 GRRGPRVQADRRAIQQVLINIIGNAIKFGPEDSEIIVTFS--DGDPVEIRVRDEGPGMTM 346

Query: 733 DMCKSVFNRF----VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              +     +    +  +H      G GLGL I    + LH G + I S+  G TT+   
Sbjct: 347 RQIERAMQPYGRTQIEPSHTSPSNGGTGLGLPIAHRLVELHNGRLRIDSAPGGGTTVVVS 406

Query: 788 IP 789
           +P
Sbjct: 407 LP 408


>gi|107104081|ref|ZP_01367999.1| hypothetical protein PaerPA_01005154 [Pseudomonas aeruginosa PACS2]
          Length = 750

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 18/223 (8%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           AD  K+ F+  +S+E+R+PL  I+G  +LL+ + LG    +  Q +  ++ +   LL ++
Sbjct: 255 ADRAKSRFLATMSHEIRTPLNGILGMAELLREASLG---ERDRQRLRALATAGEGLLAIL 311

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGS 679
           N++L  A ++            L  LL +V   +  +  EN  R+ +     + DG  G+
Sbjct: 312 NEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGA 371

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                Q L Q+ + +L NA+ F+  G        L  +  +     SV ++G  IPE+M 
Sbjct: 372 ----EQFLRQVLTNLLGNAVKFTEAGEVRVRVERLVRSAGSERLRLSVADDGIGIPEEMR 427

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + +F RF        RR  G GLGL+I +  +   GG + + S
Sbjct: 428 ERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVES 470


>gi|90579698|ref|ZP_01235507.1| probable sensor/response regulator hybrid [Vibrio angustum S14]
 gi|90439272|gb|EAS64454.1| probable sensor/response regulator hybrid [Vibrio angustum S14]
          Length = 669

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 120/259 (46%), Gaps = 22/259 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E+   L +A +IK  F+ ++S+E+R+P+  ++GF   L+   L   + +Q   + Y
Sbjct: 260 RKLREQANDLSEAIKIKAEFMANMSHEIRTPMNGVLGFVQCLEERNLDQESQRQ---IGY 316

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I  S+  LL ++N+ILD + +++G ++L+ +   L   ++        +     I++   
Sbjct: 317 IKESAYSLLVIINEILDYSKLESGNVELHMTAFNLKPFVHSCATPFIHQAKIKKIQLSTE 376

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------- 718
           I +G   SF AD  RL QI   ++ NA+ F+  GS  ++   RD  +             
Sbjct: 377 IGEGLADSFTADEGRLRQILINLIGNAVKFTHTGSVKLVVEKRDPPEQQCEELKKYNDKH 436

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                F VK+ G  I E+    +F+ +        R+  G GLGLSI  S   L    + 
Sbjct: 437 IQWLRFKVKDTGIGIAEEKLAFIFDSYTQADGSISRQFGGTGLGLSISNSLCRLMSAKLQ 496

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S+    T     IP K+
Sbjct: 497 VDSTIGNGTEFWFDIPLKQ 515


>gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1118

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 118/241 (48%), Gaps = 11/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     ER L    +A   A+  K+ F+ ++S+E+R+P+  ++G   LL  +   +L 
Sbjct: 397 DITARKNIERELQNARKAAEAANRAKSEFLANMSHEIRTPMNGVLGAVGLLLNT---TLT 453

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-M 662
             Q +      AS   LL ++NDILD + ++AG + ++     L   + EV   +A +  
Sbjct: 454 PSQRELAGLARASGETLLCIINDILDFSKIEAGKLVISPVPFDLLQAVEEVAGMVAMQPA 513

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNG 717
            + N+ + V     +  +V  D  R+ Q+   + +NA+ F+ KG  +I   A     D  
Sbjct: 514 RKANVNVIVRYLPNVPRYVFGDLGRIRQVLINLTNNAIKFTDKGHVLIDVEAEALSEDEV 573

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               SV+++G  I  D  +S+F++F        RR  G GLGL+I +  + L GG ++  
Sbjct: 574 SLRISVEDSGLGIAPDKLQSIFDKFTQADASTTRRYGGTGLGLAISKQLVQLMGGTIAAK 633

Query: 776 S 776
           S
Sbjct: 634 S 634


>gi|83941860|ref|ZP_00954322.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           EE-36]
 gi|83847680|gb|EAP85555.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           EE-36]
          Length = 713

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 117/241 (48%), Gaps = 11/241 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T++V  +R L +       A+  K+ F+  +S+E+R+P+  I+G T++L  +   +L 
Sbjct: 191 DITETVEYQRKLVDARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDT---ALT 247

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  YV+ I  S   LL ++ND+LD + ++A  + ++ +   L  +  EV   +     
Sbjct: 248 QDQRLYVDTIKTSGEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQPLAV 307

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNG 717
           +  + + +  D  L    V D  R+ Q+ + ++ NA+ F+  G     +T +  A   N 
Sbjct: 308 QKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFTQNGHILIRATGLPDAGSGNV 367

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                +++ G  I  DM + +   F   S+       G GLGL+I +  + L GG + ++
Sbjct: 368 LIKILIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQLMGGEIWVT 427

Query: 776 S 776
           S
Sbjct: 428 S 428


>gi|308271995|emb|CBX28603.1| hypothetical protein N47_G39270 [uncultured Desulfobacterium sp.]
          Length = 491

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 3/225 (1%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL+K D +K+ FV  VS+E+RSP+ +++    ++     G L  KQ   +         L
Sbjct: 257 ALKKMDRMKSEFVSTVSHEIRSPMNSVLMQIQVILDGLAGELTEKQRDILTRAYRKVENL 316

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             +  ++LDLA +++G++ L    + + D++ +            +I + +    +L   
Sbjct: 317 AQMTTELLDLARIESGLITLEREPVAMADVIRDQVAFYLPLAASASIGMDIDISQELPPV 376

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +A+R+ + ++ S +++NA+ +S  G  + + A+  N      VK+ G  I  +    +F 
Sbjct: 377 LANRRNMEEVLSNLITNAIKYSPGGGRITVSASIANDYLHIRVKDTGMGISAEDQHRIFE 436

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVT 782
           RF     +  R   G GLGL IV+S +  H G + I S + EG T
Sbjct: 437 RFYRVKDKKTRYINGTGLGLVIVKSILESHQGRIKIESQEGEGST 481


>gi|307301290|ref|ZP_07581052.1| PAS/PAC sensor hybrid histidine kinase [Sinorhizobium meliloti
           BL225C]
 gi|307317961|ref|ZP_07597398.1| PAS/PAC sensor hybrid histidine kinase [Sinorhizobium meliloti
           AK83]
 gi|306896363|gb|EFN27112.1| PAS/PAC sensor hybrid histidine kinase [Sinorhizobium meliloti
           AK83]
 gi|306903746|gb|EFN34333.1| PAS/PAC sensor hybrid histidine kinase [Sinorhizobium meliloti
           BL225C]
          Length = 759

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 22/231 (9%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+  +  VS+E+R+PL+ I+G + LL  ++   L+ +Q  Y+  +  S   L+ LV D++
Sbjct: 244 KSRLLATVSHEIRTPLSGILGMSRLLAETR---LSEEQKNYLAGMQQSGHTLVQLVEDLI 300

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA------ 682
           D +++  G  +L  S   L   +  V + ++ + HE NI I        G+ VA      
Sbjct: 301 DFSSLAVGRFQLRPSQEDLRQTVENVVEMLSPRAHEKNIEI--------GATVAIEVPER 352

Query: 683 ---DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  RL Q+   ++ NA+ F+ KG  V +    +NG     + ++G  +  D    VF
Sbjct: 353 MLFDAARLRQVLFNVVGNAVKFTEKGG-VFVSVDIENGSVRIRIDDSGPGMSADELARVF 411

Query: 740 NRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F       QR +G GLGL+I    +   GG ++ +S     +    R P
Sbjct: 412 EEFEQAGDDAQRAKGTGLGLAISRRIMEAFGGSLTATSMSGKGSRFEIRFP 462


>gi|153811915|ref|ZP_01964583.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174]
 gi|149832049|gb|EDM87134.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174]
          Length = 865

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 136/271 (50%), Gaps = 27/271 (9%)

Query: 537 QTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +L  ++VT   +AE    +AL E   +   A+  K  F+ ++S+++R+P+  I+G T 
Sbjct: 320 KVLLASMDVTQEKKAEIESRQALKEAYWSAENANRAKTEFLSNMSHDIRTPMNAIVGLTA 379

Query: 593 LLKTSKLGSLNSKQSQYVE---YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +      G+    Q + +E    I+ SS  LL L+N++LD+A +++G M L      L D
Sbjct: 380 IA-----GANIESQDRVIECLSKITKSSRHLLGLINEVLDMARIESGKMTLAQEDFNLPD 434

Query: 650 LLNEV----KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++ +    K  +    H  ++RI  I    +     D  R+ Q+F  ++SNA+ ++  G
Sbjct: 435 LVDNLITLTKPVLDEHKHNFDVRINHIEHEDV---CGDSLRIQQVFVNLMSNAIKYTLDG 491

Query: 706 STVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR-RGVGLG 757
             +            + G + F++++NG  +  +  K +F+ F  ++ HR  + +G GLG
Sbjct: 492 GNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTKVQGTGLG 551

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++I  + +NL  G++ + S+    T I   I
Sbjct: 552 MAISRNIVNLMNGNIKVDSTLHKGTKITVTI 582


>gi|300787746|ref|YP_003768037.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299797260|gb|ADJ47635.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1361

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 4/223 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K +F  ++S+E R+PLT I+G    L+ +  G+   +  + V+ I  ++  L  LVN++L
Sbjct: 336 KTTFFANISHEFRTPLTLILGPAAELREALAGA-GERVREEVDVIQRNALRLGRLVNNLL 394

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D + ++AG M+  +  + L     E+       +    +   V           DR    
Sbjct: 395 DFSRIEAGRMQARFEPVDLGTFTAELASVFRAAVERAGLAFDVDCRPSDEPVHVDRGMWE 454

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           ++   +LSNA+ F+  G+ + + +A + G  + +V + G  I       +F RF  + +A
Sbjct: 455 KVVFNLLSNAVKFTFDGA-IRVTSAVEAGHAVIAVSDTGIGIDAAELPRLFERFHRIPSA 513

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 G G+GL++V   + +HGG V++ S+    TT   R+P
Sbjct: 514 RARSNEGSGIGLALVRELVGMHGGSVAVESTPGAGTTFRVRVP 556


>gi|293395635|ref|ZP_06639918.1| sensor histidine kinase [Serratia odorifera DSM 4582]
 gi|291421954|gb|EFE95200.1| sensor histidine kinase [Serratia odorifera DSM 4582]
          Length = 904

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L + +++   R ER L +  +    A   K+ F+  +S+E+RSP+  I+G  + L++ +
Sbjct: 403 LLGWYDISQRKRLERDLADALQQATDASREKSDFLARMSHEIRSPMNAILGILE-LESQR 461

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             + +S  S  + Y  A+S  LL +V D+LD++ ++AG + L      L  LL ++ ++ 
Sbjct: 462 PDAADS--SLPIAY--AASRQLLQIVGDVLDISKIEAGELHLQPQPTALYPLLTQLLETY 517

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           AT   +  +R+   I       ++ D  +L Q+ + +LSNA+ ++ +G  V L+ +  + 
Sbjct: 518 ATLAAQKALRLDSDIEAAWQCDYLLDGTKLTQVLNNLLSNAIKYTERG-FVALQVSVQSQ 576

Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           D       FS+ ++G  I   M + +   +V  A        GLGL+I    + L GG +
Sbjct: 577 DTQYDRVTFSITDSGIGIAPQMQQKILQPYV-QADPNTPASTGLGLAICTQLVQLLGGEL 635

Query: 773 SISSSDE 779
            I S+ +
Sbjct: 636 QIDSAPQ 642


>gi|269837966|ref|YP_003320194.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
 gi|269787229|gb|ACZ39372.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
          Length = 366

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 110/239 (46%), Gaps = 3/239 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +RA         +   +++     +S+E+R+PL +I G+   L           + +++ 
Sbjct: 117 QRAARPAGRLASQGAHLRSDLAAILSHEMRTPLASIKGYASALLLEDAYWDEETRREFLL 176

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I A +  L  L+ D+LD + ++AG +++    I+L  ++      +A +   +   +  
Sbjct: 177 AIDAETDHLTQLIEDVLDASIIEAGALRIEPEPILLPHMVRRAIDKLALRTDRHRFVLSF 236

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D    + +AD  R+ Q+ S +L NA+ +S +G  +++       + + SV + G  I 
Sbjct: 237 PPD--FPAVMADALRIDQVLSNLLDNAVKYSPQGGLIVVSGRVAGDEVVVSVADQGIGIA 294

Query: 732 EDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +F R+   +  G+R  G GLGL I ++ I  HGG +   S+    T  +  +P
Sbjct: 295 PEHLNKLFERYFRASTNGRRVAGTGLGLPISDAIIRAHGGRIWAESTVGQGTVFSFTLP 353


>gi|253702322|ref|YP_003023511.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251777172|gb|ACT19753.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 665

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 39/260 (15%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+A  E+N    + D +KN F+  VS+E  +PLT+II   + L  +   S    +S  +E
Sbjct: 390 EQANLEQN----RLDRMKNQFLGMVSHEFNTPLTSIISGVEHLLQNGWHSEQEARS-VLE 444

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +      L  LV D+L L  V+A    L  S + L   L+E+   +  ++ E   R+ +
Sbjct: 445 LVRDGGLRLKGLVADLLKLIKVEARRGALETSAVHLRHFLSELSAQLQPQLEERGQRVTL 504

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------------RDN 716
               +L  F ADR  L ++F ++L NA+ FS     +++                  R N
Sbjct: 505 AGLDELPYFDADRHYLERVFGELLQNAIRFSPHRGEIVVTGKVVDRPALLERRETLERFN 564

Query: 717 GDFI----------FSVKNNGSSIPEDMCKSVFNRFV---------SNAHRGQRRGVGLG 757
            +F+            V+++G  IP +  + +F  F          S   R Q RG GLG
Sbjct: 565 PEFLRRCGDRCYLEVEVRDSGIGIPPEEQQGIFGIFYEVGEIKHHSSGMSREQGRGAGLG 624

Query: 758 LSIVESFINLHGGHVSISSS 777
           L++V+  +  HGG V + S+
Sbjct: 625 LAMVKGMVEAHGGMVWVESA 644


>gi|160886361|ref|ZP_02067364.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483]
 gi|293372788|ref|ZP_06619169.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|156108246|gb|EDO09991.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483]
 gi|292632297|gb|EFF50894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1315

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 186/420 (44%), Gaps = 76/420 (18%)

Query: 396  NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            NG++++  +T+ P G +     N+T+++  + K     KV    I+ L+        D +
Sbjct: 656  NGESVNNELTNRPTGISAPWNSNITIRIMSKEKDIFRQKVYRYQIEGLN--------DQQ 707

Query: 456  IKLSNP--AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERK 512
            I+  NP  A RSL         PG++   I A+C+      DG W               
Sbjct: 708  IESYNPELAIRSL--------PPGSY--KIMASCT----AKDGSW--------------- 738

Query: 513  SLQGTLELLSDSVLEYSIIP-------LPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                   + S  VLE +I+P          + T+LT   + ++ R  R L  K E L+ A
Sbjct: 739  -------IPSQEVLELTILPPWYRTWWFILSCTVLTAAAIIETFR--RTLKRKEEKLKWA 789

Query: 566  --------DEIKNSFVQHVSYELRSPLTNI-IGFTDLLKTSKLGSLNSKQSQY--VEYIS 614
                     E K  F+ ++S+ELR+PLT I    + +LK     SL+++ +QY  ++ I 
Sbjct: 790  MKEHEQQVYEEKVRFLINISHELRTPLTLIHAPLSRILK-----SLSAEDTQYLPIKAIY 844

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              S  + NL+N +LD+  ++ G  KL      LN  +  V Q   ++    N+RI+   D
Sbjct: 845  RQSQRMKNLINMVLDVRKMEVGESKLQIQPYALNQWIEHVSQDFVSEGEAKNVRIRYQLD 904

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPE 732
             ++ +   D+ +   I S +L NA+  S + + + + +    +      S+ + G+ + +
Sbjct: 905  PQVNTVSFDKDKCEIILSNLLINALKHSPQDAEITITSELLSEKNSVRISIIDRGNGLKQ 964

Query: 733  DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               + +F RF      G++ G G+GLS     + LHGG +    + E   T    +P ++
Sbjct: 965  VNTQKLFTRFYQGT--GEQSGTGIGLSYSRILVELHGGSIGARDNQEAGATFFFELPLRQ 1022


>gi|49481209|ref|YP_039455.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196036107|ref|ZP_03103507.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218906657|ref|YP_002454491.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
 gi|49332765|gb|AAT63411.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195991274|gb|EDX55242.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218538378|gb|ACK90776.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
          Length = 613

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV +VS+ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIA-PQFLTVTQEETERMIRLVNALLQLS 444

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +D+   +L    +   D  N +         E N+  K  S  K   F+  D  ++ Q+
Sbjct: 445 KLDSTEHRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKR-SFSKKSRFIDMDTDKITQV 502

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
              I+SNA+ +S +G TV  +  RD G+ +  SV + G  IP++    +F RF  V  A 
Sbjct: 503 LYNIISNALKYSPEGGTVTYR-LRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKAR 561

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q  G GLGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 562 SRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|328856106|gb|EGG05229.1| hypothetical protein MELLADRAFT_27303 [Melampsora larici-populina
           98AG31]
          Length = 365

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 16/229 (6%)

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K++F+ ++S+E+R+P+ N++G  +LL  ++L SL   Q  Y E I +S+  LL++V
Sbjct: 3   ANQSKSTFLSNMSHEIRTPIANVLGIIELLLETELDSL---QRDYAETIKSSADGLLDVV 59

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGS--- 679
            DILD + ++ G +  + S   L DL +E+ +           R +  +  D  +G+   
Sbjct: 60  GDILDFSKIECGKLSFDPSPFNLKDLFHELDRIFTHTARSKRSRFQSNLTIDPTIGTNPE 119

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSI-PEDM 734
            + D+ R+ Q+ S ++SN++ F+  G  T+ L+  R   D +    ++K++G  + PE +
Sbjct: 120 IIGDKGRVRQVLSNLVSNSLKFAPTGRITLDLRLERSPPDRLKLSATIKDDGIGLTPESL 179

Query: 735 CKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEG 780
                 +  S A     R   G GLGL IV++ ++   G VS+ S   G
Sbjct: 180 RILTSWQPFSQAESSTSRLYGGSGLGLCIVKTLVDAMDGTVSLESEGLG 228


>gi|308535171|ref|YP_002137349.2| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|308052516|gb|ACH37553.2| LOW QUALITY PROTEIN: sensor histidine kinase [Geobacter
           bemidjiensis Bem]
          Length = 554

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 116/254 (45%), Gaps = 19/254 (7%)

Query: 552 ERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           E+AL +  E L         A+  K  F+ ++S+E+R+PL   +G   L+    +G+   
Sbjct: 283 EKALLQTGERLAVAQRQSEAANRAKTEFLANMSHEMRTPLAGALGMIRLVLDMNIGA--- 339

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ Q +E    S+  LL ++ D+LD + ++AG+M        L +++    + ++    E
Sbjct: 340 EERQLLEMAKRSADSLLRIIADLLDFSRLEAGVMTFEDKPFSLKEVVRSAVEVVSLVAEE 399

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719
             + +    DG +      D  RL Q+   +L NA+ F+ +G    S   L+     G+ 
Sbjct: 400 KELHLSWSVDGAVPDQLSGDEGRLRQVLVNLLGNAVKFTERGGIEVSIKTLEPLEAQGER 459

Query: 720 I--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  IP D  + +F+RF        RR  G GLGL++    +   GG +   
Sbjct: 460 YVEFYVRDTGVGIPADQLQRIFDRFTQVDSSLTRRHGGTGLGLALTRQIVEKMGGSIWAE 519

Query: 776 SSDEGVTTINCRIP 789
           S     +T +  +P
Sbjct: 520 SVIGSGSTFHFTVP 533


>gi|298242874|ref|ZP_06966681.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297555928|gb|EFH89792.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 465

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 126/268 (47%), Gaps = 16/268 (5%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---------ALTEKNEALRKADEIKN 570
           +LS ++L+  +  L  A   L   N+T  V+  R         A     ++L +++ ++ 
Sbjct: 182 MLSGTILK-PVRALTRAARQLEQGNLTQRVQIRRLDEIGDLAHAFDTMADSLERSEHLRR 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             + ++++ELR+PLTNI G+ +  +   +    +     +  I   + +L  +V D+ DL
Sbjct: 241 QLLSNIAHELRTPLTNIRGYLEAFQDQVI----TPDPAVIASIYEEAMLLSRMVTDLQDL 296

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A  +AG ++L    I L D++ +   +++ +     I         L    AD QR+ QI
Sbjct: 297 ALAEAGQLRLQRVHIALEDVITKAINALSLQAENKKISFSANIAPNLPLVEADAQRVGQI 356

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
              +L+NA+ ++ +   V + A     +   SV++NG  I  +    +F  F     +  
Sbjct: 357 MRNLLNNAIKYTPEQGEVRVSARALQKEIQVSVRDNGMGIAAEHLPYIFKHFYRADTSRT 416

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISS 776
            +  G GLGL+IVE  +  HGG +++ S
Sbjct: 417 RETGGSGLGLAIVEQLVCAHGGRITVES 444


>gi|297538299|ref|YP_003674068.1| integral membrane sensor signal transduction histidine kinase
           [Methylotenera sp. 301]
 gi|297257646|gb|ADI29491.1| integral membrane sensor signal transduction histidine kinase
           [Methylotenera sp. 301]
          Length = 477

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 125/233 (53%), Gaps = 5/233 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ +E K  F++HVS+EL++PLT I   T+LL     G+L ++QS+    +  +S  L 
Sbjct: 246 LKEVNEQKQQFLRHVSHELKTPLTAIREATELLYDGIGGALTAQQSEITLILRENSIRLQ 305

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ ++L+   +++   +L    + L++++N+V  + A  +   N  + V +   + + V
Sbjct: 306 RMIENLLNYTRMESIEAELTLVQLNLSEVINKVINAHALSIR--NKELAVETHYNVETVV 363

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD ++L  I   ++SNA+ ++ +   + ++   +   +I  VK+NG  + E     +F+ 
Sbjct: 364 ADEEKLTIILDNLISNAVKYTPQQGLISVQTRFEKETWIIDVKDNGPGLAELDQAQLFDP 423

Query: 742 FV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F   +  H+    G GLGL+I +  +N H G + ++ S++G   I   IP  E
Sbjct: 424 FYRGNTLHKSLIGGSGLGLTIAKDLVNAHQGVIKLAESNQGAHFI-VSIPQLE 475


>gi|289434077|ref|YP_003463949.1| sensor histidine kinase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170321|emb|CBH26861.1| sensor histidine kinase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 459

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L K++  +  FV +VS+EL+SPLT++ GF  LL +  L     ++++Y+  +S  +T L 
Sbjct: 232 LEKSEAARQEFVANVSHELQSPLTSMQGFATLLASDTL--TEKERAEYLAVLSEETTRLS 289

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L   +L LA++D          + L     ++ Q+         I I +  D    +  
Sbjct: 290 SLTKQLLTLASLDQEAELRKKDQVQLEVQWRQLLQTTEWSWRAKEITINLELDKV--NCT 347

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D + L Q++S +L+NA+ F+    T+ ++  +D       V+++G  I E     +F R
Sbjct: 348 GDAELLYQVWSNLLTNAIKFTPTSGTINIRLYQDASHAFVEVEDSGIGISEADIDKIFQR 407

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F    H   R     GLGLSI +  I+LH G + + S  E  T    ++P
Sbjct: 408 FYKANHSRTREEGSSGLGLSICKKIIHLHHGEIFVESKSEKGTKFTIKLP 457


>gi|261819661|ref|YP_003257767.1| aerobic respiration control sensor protein ArcB [Pectobacterium
           wasabiae WPP163]
 gi|261603674|gb|ACX86160.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae
           WPP163]
          Length = 789

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 34/247 (13%)

Query: 553 RALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +TE+    +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   L+ +Q +Y
Sbjct: 264 RDITERKRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLDTQ---LDPEQQKY 320

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV----------LNDLLNEVKQSIA 659
           ++ I  S+  L N+ ND++++   +   ++L+   I           L  LL E K    
Sbjct: 321 LKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLENLGGLLAEPKGLKL 380

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAAR 714
                  +  KVI+DG          RL QI   +LSNA+ F+ KG       ++++   
Sbjct: 381 IMDQHPPLPQKVITDGT---------RLRQILWNLLSNAVKFTPKGEKGEKGEIVVRVWH 431

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR-GVGLGLSIVESFINLHGG 770
           + GD + F V+++G  IP D  + +F  +  V + H G+   G G+GL++ +      GG
Sbjct: 432 EKGDRLRFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGSGIGLAVSKRLAQNMGG 491

Query: 771 HVSISSS 777
            + +SS+
Sbjct: 492 DIQVSST 498


>gi|228900141|ref|ZP_04064374.1| hypothetical protein bthur0014_13480 [Bacillus thuringiensis IBL
           4222]
 gi|228907193|ref|ZP_04071054.1| hypothetical protein bthur0013_13630 [Bacillus thuringiensis IBL
           200]
 gi|228852414|gb|EEM97207.1| hypothetical protein bthur0013_13630 [Bacillus thuringiensis IBL
           200]
 gi|228859547|gb|EEN03974.1| hypothetical protein bthur0014_13480 [Bacillus thuringiensis IBL
           4222]
          Length = 604

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 140/291 (48%), Gaps = 31/291 (10%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AE 552
           +D    +  + DDE   L G++  LS                    VN+ D +     A 
Sbjct: 326 FDFSEKLPVTADDEIGGLSGSINTLS--------------------VNLKDRIDRLNVAN 365

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  E  R+ ++ +  F+  VS+EL++PL+ I  F + +K      ++   S Y + 
Sbjct: 366 TKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIK----DGVSKDTSYYTDV 421

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  L+ ++L+LA +++G  KL+ +T  + +L  +V   +   M E ++++ V 
Sbjct: 422 ILEETENMNRLIVEMLELAKLESGTYKLDMTTFSIGELTQQVYTKLLFSMEEKHLQVNVD 481

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  +    A+R R+ Q+   +LSNA+ ++  G  + +            ++N G+ IPE
Sbjct: 482 ADPSI-LVKANRSRIEQVVVNLLSNAIRYTPDGEKIQVSIIEAEDTVKIEIENTGNPIPE 540

Query: 733 DMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +  + +++RF   +A R +   G GLGLSIV++ ++LH     + ++   V
Sbjct: 541 ESLEKIWDRFYRLDASRSRHTGGTGLGLSIVKNILDLHHAEYGVYNTTNSV 591


>gi|254513206|ref|ZP_05125271.1| sensory box histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
 gi|221532210|gb|EEE35206.1| sensory box histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
          Length = 820

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 127/251 (50%), Gaps = 9/251 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+ ++AE  L    +  +++++ K+  +  +S+E+R+PL  I+G  +L+  S   +L 
Sbjct: 326 DITEDLKAEEDLRTARDKAQESEQAKSDLLTVMSHEMRTPLNGILGSAELIDRS---NLT 382

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++  I  S  +LL+ V D+LD + + +G    + S   +  ++ EV  S+     
Sbjct: 383 DRQKRHLHSIEVSGKLLLSHVTDVLDFSRLGSGNALRDKSNFDICKVVREVADSLTANAD 442

Query: 664 E--NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI 720
              N++++ V+S+ +L   +  R  L Q    +L NA++F+  GS  I ++  R N    
Sbjct: 443 ARGNDLKVDVLSE-ELCEVLGYRTALQQCLVNLLGNAIEFTRDGSVTIEVERLRHNDLVE 501

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F + + G  I  +    +F+ FV+   A    + G GLGL+I +      GG +S  S  
Sbjct: 502 FRIADTGVGISPEYLDVIFDEFVTIDTAFARDKSGTGLGLAITKRLAEAMGGDISADSVL 561

Query: 779 EGVTTINCRIP 789
              +  + R+P
Sbjct: 562 GEGSLFSMRLP 572


>gi|254467050|ref|ZP_05080461.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
 gi|206687958|gb|EDZ48440.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
          Length = 764

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 127/260 (48%), Gaps = 12/260 (4%)

Query: 539 MLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           M+T  +++T +VR E  L         A+  K++F+ ++S+E+R+P+  ++G  +LL  +
Sbjct: 185 MVTLALDITSTVRYEEELRAARARAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDT 244

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+ +Q  Y   I  S   LL ++ND+LD + ++A  ++L+     L   L+EV   
Sbjct: 245 E---LDEEQRLYASTIKNSGEALLVIINDVLDYSKIEADKLELHPEPFDLERCLHEVVML 301

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +     +  I + V  D  L + F  D  R+ Q+ + +  NA+ F+ +G   +      +
Sbjct: 302 LQPTARDKGIALLVDYDLFLPTRFTGDPGRIRQVLTNLAGNAVKFTKEGHVTLRVTGITS 361

Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
            D        ++++ G  IP++    +F  F  V +    Q  G GLGL+I +  I + G
Sbjct: 362 PDDKQCAVHVNIEDTGIGIPQEKISHIFGEFNQVEDERNRQFEGTGLGLAISKRLIEMMG 421

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S +   +    R+P
Sbjct: 422 GEIWVDSEEGKGSCFGFRLP 441


Searching..................................................done


Results from round 2




>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254547827|gb|ACT57298.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 792/792 (100%), Positives = 792/792 (100%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60
           MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS
Sbjct: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120
           FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK
Sbjct: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
           FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE
Sbjct: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
           TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES
Sbjct: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
           RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT
Sbjct: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR
Sbjct: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT
Sbjct: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI
Sbjct: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML
Sbjct: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG
Sbjct: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT
Sbjct: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI
Sbjct: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG
Sbjct: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780

Query: 781 VTTINCRIPSKE 792
           VTTINCRIPSKE
Sbjct: 781 VTTINCRIPSKE 792


>gi|315122049|ref|YP_004062538.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495451|gb|ADR52050.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 792

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 625/792 (78%), Positives = 709/792 (89%), Gaps = 2/792 (0%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60
           M  G+ATI IG  + I  +FSCK+ +FGTI GMLL TIIP+I+LI+QRN+LAK+VNE+YS
Sbjct: 1   MTTGIATIDIGNEMGIWAIFSCKMLIFGTIVGMLLATIIPLIMLIKQRNNLAKQVNESYS 60

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120
             SEIC QLSKYH+LLTENNCL IVWDGKD TPEIIGQL++R+DIP  DTD LSFENWLK
Sbjct: 61  SFSEICYQLSKYHALLTENNCLIIVWDGKDGTPEIIGQLNRRMDIPLKDTDFLSFENWLK 120

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
           FHHYI+LSK  +KLR+EGQSFDL+AET+ND AIKIEGRVSGSCAFLR L+L+G+YSELAE
Sbjct: 121 FHHYIQLSKEIKKLREEGQSFDLIAETKNDWAIKIEGRVSGSCAFLRFLTLNGVYSELAE 180

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
           TTL+CKK+S H+SVFK+LFDSLDFLVW R+Q G++LWAN SYKKNTE      QK I ++
Sbjct: 181 TTLECKKISGHMSVFKLLFDSLDFLVWQRNQRGELLWANNSYKKNTEETS--PQKEIFDN 238

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            KLF+EE+KKRMISS  LE+NFC+TVS++E G +KSYKI++VLNSFGEAGIAIDVSKEIT
Sbjct: 239 YKLFEEEVKKRMISSVELEENFCKTVSSIERGKHKSYKIIKVLNSFGEAGIAIDVSKEIT 298

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
            NDQLTHTY+IL NLTVAIAIFDQNRYLQF+N+SF+ LW++D AFL +NPSNDE LEFLR
Sbjct: 299 ANDQLTHTYDILQNLTVAIAIFDQNRYLQFYNQSFMALWQMDPAFLKSNPSNDEFLEFLR 358

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           SANKLPEQL+WKTWKE IFS YKSS  HKDTWHLP GQTLHVIV +NP GGTIWMFENLT
Sbjct: 359 SANKLPEQLDWKTWKEKIFSAYKSSGDHKDTWHLPTGQTLHVIVVTNPLGGTIWMFENLT 418

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           VQVDLET+YNTLVKVQGE IDHLSEGVAVFGPDGRI+LSNP FRSLWK EE ++SPGTHI
Sbjct: 419 VQVDLETRYNTLVKVQGEAIDHLSEGVAVFGPDGRIQLSNPVFRSLWKVEEEQVSPGTHI 478

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           RNIA+TCS+YYN+SDGWDLFAAIITSF+DERKSLQGTLELLSD+VLEYS+IPLPNAQTML
Sbjct: 479 RNIASTCSKYYNKSDGWDLFAAIITSFEDERKSLQGTLELLSDAVLEYSVIPLPNAQTML 538

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TFVNVTDSVRAERALTEKNEAL KADEIKN+FVQHVSYELRSPLTNIIGFTDLLKTSKLG
Sbjct: 539 TFVNVTDSVRAERALTEKNEALHKADEIKNNFVQHVSYELRSPLTNIIGFTDLLKTSKLG 598

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN KQSQYVEYIS SS +LLNLVNDILDLATV+AGIMKLNYS I+L+DLLNEVKQSIA+
Sbjct: 599 GLNPKQSQYVEYISTSSELLLNLVNDILDLATVNAGIMKLNYSEIILSDLLNEVKQSIAS 658

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           KMHENNI ++++S   LGS VADRQRLLQIF+KILSNA DFSSKGSTV+L+A RD  DF+
Sbjct: 659 KMHENNITLEIVSRKALGSVVADRQRLLQIFAKILSNAADFSSKGSTVLLEADRDATDFV 718

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           FSV +NGS+IPEDM ++VFN FVS++H GQRRG+GLGLSIV+SF+NLHGG V ISS  EG
Sbjct: 719 FSVTSNGSNIPEDMRQNVFNGFVSDSHHGQRRGMGLGLSIVKSFLNLHGGSVFISSPHEG 778

Query: 781 VTTINCRIPSKE 792
            T  NCRIPSK+
Sbjct: 779 TTIFNCRIPSKK 790


>gi|222084231|ref|YP_002542757.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221721679|gb|ACM24835.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 824

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/792 (51%), Positives = 549/792 (69%), Gaps = 7/792 (0%)

Query: 5   MATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSE 64
           +A         +    S ++AVF  I G++   ++  + ++RQR +L  +  E  + LS+
Sbjct: 28  LAQTSAASPAVVRLFTSSEMAVFSVIIGVISAALLSTVWMVRQRGNLESESREIRTALSD 87

Query: 65  ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHY 124
              ++S+Y +L+ + N   I+WDG++  PE++GQL      PQ D + L+F  W+K    
Sbjct: 88  ANQRISQYQALIADKNRRIIIWDGQNARPELLGQLPVETGAPQ-DNEFLAFGRWMKSWSA 146

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
            +L KA +KLR  GQSFD+V ET  +  ++ +GR+SG  AF+R ++L+ + +ELAE  ++
Sbjct: 147 GELEKAIDKLRGSGQSFDIVVETNREEILEAQGRISGGRAFVRFIALNNLRAELAELKIE 206

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
            ++L   IS F+ L D++D  VW RD  G + W N +Y +  E   +   +A+ E R+  
Sbjct: 207 RERLMTSISAFQNLLDAIDLPVWQRDADGQLTWVNHAYGEAVEA--VSPDEALREGREFL 264

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
               ++R+ +S+  E  F + +ST+ HGN   + ++ V    G AG+AIDVS+  TV  +
Sbjct: 265 TTVARERIRASATPESPFHDKISTVVHGNRTFFDVIDVKLPNGSAGMAIDVSETETVRAE 324

Query: 305 LTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L        E L +L   +AIFD +R LQF+N++FV+LWE+D+AFL   P N ELL+ LR
Sbjct: 325 LERTLKSHAETLDHLATPVAIFDGDRRLQFYNQAFVQLWELDIAFLEKKPDNSELLDRLR 384

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           SA KLPEQLNWKTWK+ + SVY++ +T  D WHLPNGQ L V  T++P+GG  W+FENLT
Sbjct: 385 SAKKLPEQLNWKTWKDGVLSVYRALDTQSDLWHLPNGQILRVFATAHPQGGATWVFENLT 444

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            QVDLET+YNTLV VQGETIDHLSEGVAVFGPDGRI+LSNPAFR LW   E +  PGTHI
Sbjct: 445 EQVDLETRYNTLVVVQGETIDHLSEGVAVFGPDGRIRLSNPAFRILWNITEIQAKPGTHI 504

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           + +A  C+  Y+  DGW  FA  ITSFDDER S QGTLEL S+ VL+Y++IPLPNAQTML
Sbjct: 505 QTLAEACAPSYDRPDGWKRFAEQITSFDDERPSSQGTLELYSNLVLDYAVIPLPNAQTML 564

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TFVN TDSVRAERALTEKNEAL KADE+KN FVQHVSYELRSPLTNIIGFTDLLKT  +G
Sbjct: 565 TFVNKTDSVRAERALTEKNEALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGIG 624

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SLN +Q++Y+++IS SS +LL LVNDILDLATVDAGIM+LNYS I L+DLL+EV   IA 
Sbjct: 625 SLNDRQAEYIDHISTSSAVLLTLVNDILDLATVDAGIMRLNYSEIALDDLLDEVSMQIAD 684

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           ++ E+ + +++     LGS VAD+QRL QI  K+L+NA +F+ +GST+ LK  RD  DF+
Sbjct: 685 RLQESGVTLEITVPAHLGSVVADQQRLKQILLKLLTNAANFAPEGSTIALKCGRDGTDFV 744

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           FSV + G  I E++ ++VFNRF S+   G+R G GLGLSIVESF++LH G VSI S    
Sbjct: 745 FSVADKGPGISEEIMRTVFNRFASSGKGGKRSGAGLGLSIVESFVSLHDGQVSIESQPGK 804

Query: 781 VTTINCRIPSKE 792
            TT+NCRIPS E
Sbjct: 805 GTTVNCRIPSAE 816


>gi|190889670|ref|YP_001976212.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190694949|gb|ACE89034.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 861

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/759 (52%), Positives = 530/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK      L KA ++LR E QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPAETGAPQ-DGEFLAFGLWLKSRSAADLEKAIDRLRDEAQSFDMVVETIRDEVLEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y    E      Q+AI E R++     ++R+ +++  E  F +T+ST+ HGN  
Sbjct: 275 TWVNQAYGDAVEARS--PQQAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AG+A+DVS    V  +L        E L +L   +AIFD  R LQF+
Sbjct: 333 FFDVVDVTLPGGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++ E+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVVLEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +GS++ L+  R+  DF+FSV++ G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGSSISLECRREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|15887386|ref|NP_353067.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15154889|gb|AAK85852.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 881

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/793 (49%), Positives = 536/793 (67%), Gaps = 6/793 (0%)

Query: 2   MAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
              MA  G+          S +   +    GML  T+  ++ L+RQR ++  + +E    
Sbjct: 81  TVAMAQDGLVAKTSARLFSSGETITYSLFVGMLSATLFSVVWLVRQRGNIEAESSEYRQA 140

Query: 62  LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121
           L++   +++KY +L+++ +   ++WDG D+ PE +GQL     +PQ D D L+F  WLK 
Sbjct: 141 LAQSHHKIAKYEALISDKSRRIVIWDGVDKRPEFLGQLPAETGVPQADQDFLAFGRWLKP 200

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
               +L K+ EKLR   QSFDL  ETQ    I+++GRVSG  AF R ++L+ + +ELAE 
Sbjct: 201 ASAGQLEKSIEKLRSHAQSFDLTIETQRGEVIEVQGRVSGGNAFARFIALNNLRAELAEL 260

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            ++ ++L   +S F+ L DS++  VW R+  G++ W N +Y    +      ++A+ E R
Sbjct: 261 QVERERLLASVSTFQELLDSIEQPVWRRNGEGELTWVNHAYAHAVDARNA--EQAVQEKR 318

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
           +L     ++++ +++  E  + + +ST+  GN   + +V +  + G AGIAID ++  T+
Sbjct: 319 ELLNTVTRQKIRAAATPESPYHDRISTVVSGNRSFFDVVDIKTAGGSAGIAIDATEAETI 378

Query: 302 NDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
            ++L        E L +L   +AIFD  + LQF+N++F  LW  DL  L + P N ELL+
Sbjct: 379 REELKRVLKSHAETLDHLATPVAIFDGRQRLQFYNQAFASLWGFDLVLLESGPDNSELLD 438

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            LRSA KLPEQLNWK WKE   SVY+S +T  D WHLPNGQTL VI T++P+GG  W+FE
Sbjct: 439 RLRSAGKLPEQLNWKNWKETALSVYRSLDTKTDLWHLPNGQTLRVIATAHPQGGATWVFE 498

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           NLT QVDL+ +YNTLVKVQGETIDHL+EGVAVFG DGRI+LSNPAFR+LW    +    G
Sbjct: 499 NLTEQVDLQMRYNTLVKVQGETIDHLAEGVAVFGADGRIRLSNPAFRALWGVTADEAETG 558

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           THIR I   C++ Y+  DGW  F+  ITSFDDER S QGTLELLS  VL+Y+IIPLP+AQ
Sbjct: 559 THIRAIETACAQSYDGPDGWRAFSQFITSFDDERPSRQGTLELLSGLVLDYAIIPLPDAQ 618

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TMLTFVN+TDSVRAERAL EKN+AL KADE+KN FVQHVSYELRSPLTNIIGFTDLLKT 
Sbjct: 619 TMLTFVNMTDSVRAERALKEKNDALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTP 678

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +G L  +Q++Y+++IS SS++LL +VNDILDLATVDAGIM+LNYS   LN+LL++V   
Sbjct: 679 GIGQLTERQAEYLDHISTSSSVLLTIVNDILDLATVDAGIMQLNYSDNDLNELLDDVSVQ 738

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           IA ++ E+ I +++++   LGS VAD QRL QI  K+L+NA++F+ +GS+V L   R  G
Sbjct: 739 IADRLQESGISLEIVAPAHLGSLVADHQRLKQILIKLLTNAINFAPEGSSVQLSCQRSEG 798

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           DF+FSV + G  IPEDM KSVF+RF +  + G+R G GLGLSIVESF++LH G VSI S 
Sbjct: 799 DFVFSVADKGPGIPEDMLKSVFDRFATRGNGGRRTGAGLGLSIVESFVSLHHGTVSIDSR 858

Query: 778 DEGVTTINCRIPS 790
               T + CRIPS
Sbjct: 859 PGNGTIVTCRIPS 871


>gi|327192798|gb|EGE59726.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 861

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/759 (52%), Positives = 529/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK      L KA ++LR   QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPAETGAPQ-DGEFLAFGLWLKSRSASDLEKAIDRLRDGAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y    E      Q+AI E R++     ++R+ +++  E  F +T+ST+ HGN  
Sbjct: 275 TWVNQAYGDAVEARS--PQQAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AG+A+DVS    V  +L        E L +L   +AIFD  R LQF+
Sbjct: 333 FFDVVDVTLPGGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++ E+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVALEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +GS++ L+  R+  DF+FSV++ G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGSSISLECRREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|222147058|ref|YP_002548015.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734048|gb|ACM35011.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 911

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/783 (51%), Positives = 539/783 (68%), Gaps = 6/783 (0%)

Query: 12  KGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSK 71
               I T  S ++     + G +  T++  + L+RQRNS+     E  S LS+   ++S+
Sbjct: 121 NAGGIGTFSSTEMIGLSLVIGAISATLLSTLWLVRQRNSIEADSREIRSALSDANQRISR 180

Query: 72  YHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKAT 131
           Y +L+ + N   ++WDG +  PE +GQL      PQT+ D L+F  W+K      L  A 
Sbjct: 181 YQALIADKNRRIVIWDGGETKPEQLGQLPVETGAPQTEGDFLAFGRWMKPGSAADLDNAI 240

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
           EKLR   QSFDL+ ET  D  ++++GRVSG  AF R ++L+ + +ELAE  ++  +LS  
Sbjct: 241 EKLRFNAQSFDLIVETYRDEVLEVQGRVSGGRAFARFVALNNLRAELAELKIEKTRLSTA 300

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
           I  F+ L +S++  VW RD  G ++W N +Y    E   +   +AI E R++     +++
Sbjct: 301 IETFESLLESVEQPVWQRDSEGRLVWVNQAYSDAVEA--LTPDQAIQEGREILNTITREK 358

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH---- 307
           + ++      + +TVST+ HGN   + +V      G  G+AIDVS+E  + ++L+     
Sbjct: 359 IRATLTPVSPYHDTVSTVVHGNRTFFSVVDTKTPKGSCGMAIDVSREEALREELSRTLKS 418

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             E L +L   +AIFD  R LQF+N++F +LW++DLAFL + P + ELL+ LRSA KLPE
Sbjct: 419 HAETLDHLATPVAIFDGERRLQFYNQAFQQLWDLDLAFLESRPDHAELLDRLRSAGKLPE 478

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           QL+WK WKEN  SVY+S +T    WHLPNGQTL VI +++P+GG  W+FENLT QVDLET
Sbjct: 479 QLSWKAWKENTLSVYRSIDTQTVLWHLPNGQTLRVIASAHPQGGATWVFENLTEQVDLET 538

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +YNTLV+VQGETIDHLSEGVAVFGPDGRI+LSNPAFR+LW   E + +PGTHIR I   C
Sbjct: 539 RYNTLVRVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETQAAPGTHIRAIEEAC 598

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +  Y + DGW  F  +ITSF+DER S QGT+EL+S  VL+Y++IPLPNAQTMLTFVN+TD
Sbjct: 599 ALSYEKPDGWRAFGKMITSFEDERPSSQGTIELMSGLVLDYAVIPLPNAQTMLTFVNITD 658

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           SVRAERAL EKNEALRKADE+KN FVQH+SYELRSPLTNIIGFTDLLK+S +G LN +Q 
Sbjct: 659 SVRAERALLEKNEALRKADELKNDFVQHISYELRSPLTNIIGFTDLLKSSAIGPLNERQG 718

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV++IS SS +LL +VNDILDLATVDAGIM+L YS I L DLL++V   +  ++ E  +
Sbjct: 719 EYVDHISTSSAVLLTIVNDILDLATVDAGIMRLTYSDIDLTDLLDDVSMQMTDRLQEGGV 778

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +++++   LG  VAD+QRL QI  KI++NA++FS +G+ V+LK  R++ DF+FSV + G
Sbjct: 779 TLEILAPSHLGDIVADQQRLKQILIKIITNAVNFSPEGAKVVLKCWREDADFVFSVSDTG 838

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IPEDM  SVF RF SNA  G+R G GLGLSIVESF++LH G VSI+S     TT+ CR
Sbjct: 839 CGIPEDMLPSVFKRFSSNAKGGKRTGAGLGLSIVESFVHLHNGTVSINSVPNQGTTVLCR 898

Query: 788 IPS 790
           IPS
Sbjct: 899 IPS 901


>gi|325291480|ref|YP_004277344.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325059333|gb|ADY63024.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 860

 Score =  849 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/791 (49%), Positives = 535/791 (67%), Gaps = 6/791 (0%)

Query: 4   GMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLS 63
            +A  G+          S +   +    GML  T+  ++ L+RQR ++  +  E    L+
Sbjct: 62  ALAQDGLVAKTGARLFSSGETITYSLFVGMLSATLFSVVWLVRQRGNIEAESGEYRKALA 121

Query: 64  EICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH 123
           E   +++KY +L+++ +   ++WDG D+ PE +GQL      PQ D D L+F  WLK   
Sbjct: 122 ESHHKIAKYEALISDKSRRIVIWDGVDKRPEFLGQLPVETGAPQADHDFLAFGRWLKPSS 181

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
             +L K+ EKLR   QSFDL  ETQ    I+++GRVSG  AF R ++L+ + +ELAE  +
Sbjct: 182 ASQLEKSLEKLRSHAQSFDLTIETQRGEVIEVQGRVSGGNAFARFVALNNLRAELAELQV 241

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           + ++L   +S F+ L DS++  VW R+  G+++W N +Y    +      ++ I E R+L
Sbjct: 242 ERERLIASVSTFQELLDSIEQPVWRRNGEGELIWVNHAYAHAVDARDA--EQTIQEKREL 299

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
                ++++ +++     + + +ST+  GN   + +V +  + G AGIAID ++  T  +
Sbjct: 300 LNTVTRQKIRAAATPSSPYHDRISTVVSGNRTFFDVVDIKTAGGSAGIAIDATEAETTRE 359

Query: 304 QLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           ++        E L +L   +AIFD  + LQF+N++F  LW  DL FL + P N ELL+ L
Sbjct: 360 EMKRVLKSHAETLDHLATPVAIFDGRQRLQFYNQAFASLWGFDLVFLESGPDNSELLDRL 419

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R+A KLPEQLNWK WKE   SVY+S +T  D WHLPNGQTL VI T++P+GG  W+FENL
Sbjct: 420 RTAGKLPEQLNWKNWKETALSVYRSLDTKTDLWHLPNGQTLRVIATAHPQGGATWVFENL 479

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T QVDL+ +YNTLVKVQGETIDHL+EGVAVFG DGRI+LSNPAFR+LW     +   GTH
Sbjct: 480 TEQVDLQMRYNTLVKVQGETIDHLAEGVAVFGADGRIRLSNPAFRALWGVTAEQAETGTH 539

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           IR + A C++ Y++ DGW  F+  ITSFDDER S QGTLELLS  VL+Y+IIPLP+AQTM
Sbjct: 540 IRAVEAACTQSYDKPDGWRSFSQFITSFDDERPSRQGTLELLSGLVLDYAIIPLPDAQTM 599

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LTFVN+TDSVRAERAL EKN+AL KADE+KN FVQHVSYELRSPLTNIIGFTDLLKT  +
Sbjct: 600 LTFVNMTDSVRAERALKEKNDALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGI 659

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L  +Q++Y+++IS SS++LL +VNDILDLATVDAGIM+LNYS   LN+LL++V   IA
Sbjct: 660 GELTDRQAEYLDHISTSSSVLLTIVNDILDLATVDAGIMQLNYSENDLNELLDDVSVQIA 719

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++ E+ I +++++   LGS VAD QRL QI  K+L+NA++F+ +GS+V L   R  GDF
Sbjct: 720 DRLQESGISLEIVAPAHLGSLVADHQRLKQILIKLLTNAINFAPEGSSVQLSCQRSEGDF 779

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +FSV + G  IPEDM K+VF+RF +  + G+R G GLGLSIVESF++LH G VSI S   
Sbjct: 780 LFSVADKGPGIPEDMLKAVFDRFETRGNGGRRTGAGLGLSIVESFVSLHHGTVSIDSRPG 839

Query: 780 GVTTINCRIPS 790
             T + CRIPS
Sbjct: 840 NGTIVTCRIPS 850


>gi|86355698|ref|YP_467590.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86279800|gb|ABC88863.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 860

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/759 (52%), Positives = 529/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 96  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 154

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK H   +L KA ++LR   QSFD+V ET  D  ++ 
Sbjct: 155 LGQLPPETGAPQ-DGEFLAFGLWLKSHSASELEKAIDRLRDGAQSFDMVVETIRDEILEA 213

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD  G +
Sbjct: 214 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPVGRL 273

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y    E      Q+AI E R++     ++R+ + +  E  F +T+ST+  GN  
Sbjct: 274 TWVNQAYGDAVEARS--PQQAINEGREMLTTVARERIRAVTTPESPFHDTISTVVRGNRT 331

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AGIAIDVS    V  +L        E L +L   +AIFD  R LQF+
Sbjct: 332 FFDVVDVKVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGERRLQFY 391

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N +FV LWE+D+AFL + P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 392 NHAFVALWELDIAFLESRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 451

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 452 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 511

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 512 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDER 571

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 572 RSSQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 631

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 632 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 691

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++HE+ + +++ +   LGS +AD QRL QI 
Sbjct: 692 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIIADPQRLKQIL 751

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+L+NA +FS +G+++ L+  R+  DF+FSV++ G  I  DM  +VF+RF + A  G+R
Sbjct: 752 LKLLANAANFSPEGASISLECHREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKR 811

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 812 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 850


>gi|15963791|ref|NP_384144.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|15072966|emb|CAC41425.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021]
          Length = 826

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/780 (49%), Positives = 518/780 (66%), Gaps = 9/780 (1%)

Query: 17  CTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLL 76
               + ++  F  + G++   +I  I LIRQR ++  +  E  S LS+   ++S++ +L+
Sbjct: 44  SIFGTSEVVTFSVLIGVISAAMISAIWLIRQRGNIEAENRELRSNLSDANQRISRFQALI 103

Query: 77  TENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK 136
            + N   ++WDG  E PE +GQL      PQ D D L+F  W+K     +L KA E LR 
Sbjct: 104 ADKNRRIVIWDGLAERPEFLGQLPAETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRA 163

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
           + QSFDLV ETQ +  ++ +GRVSG  AF+R ++L+ + +ELAE  L+  +L   +S F+
Sbjct: 164 QAQSFDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFR 223

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            L D++D   W R   G + W N +Y    ET+      A+ E R+L     ++R+ + S
Sbjct: 224 TLLDAVDLPAWQRGGDGRLQWVNAAYANAVETQSAST--AVAEERELLATTARERIRAVS 281

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEIL 312
            L+  F + VST+  GN   + +V      G AGIAIDVS    V ++L        E L
Sbjct: 282 TLQTPFRDKVSTVVRGNRTFFDVVDARTPAGSAGIAIDVSGIEAVREELARTLKSHAETL 341

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            +L   +AIFD N+ LQF+N++F  LW++D+ FL   P N E+L+ LR+  KLPEQLNWK
Sbjct: 342 EHLATPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEVLDRLRAGGKLPEQLNWK 401

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
            WK +  SVY++ +T  D WHLPNGQTL V  T+ P+GG  W+FENLT +VDLET+YNTL
Sbjct: 402 QWKTSALSVYQAIDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETRYNTL 461

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           V+VQGETIDHL+EGVAVFGPDGRI+LSNPAFR++W   E    PGTHIR I   C   Y+
Sbjct: 462 VQVQGETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEAQPGTHIRAIEQACLASYD 521

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           + DGW  FA IITSFDDER S +G LEL +  +L+Y++IPLPNAQTMLTFVN+TDSVR E
Sbjct: 522 QPDGWKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVE 581

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RALTEKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT   G LN +Q++YV++
Sbjct: 582 RALTEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGELNERQAEYVDH 641

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS++LL +VNDILDLATVDAGI++L  S + L DL+++V Q +  ++ E+ + ++  
Sbjct: 642 IATSSSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQMGDRLVESGVSLRTD 701

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   LG   AD+QRL QIF K+L+NA +F+  GST+ LK  R+  DF FSV + G  IP+
Sbjct: 702 APDNLGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGSDFAFSVTDTGPGIPQ 761

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           D+  +VFNRF      GQR G GLGLSIVESF++LH G+VSI S +   T + CRIPS E
Sbjct: 762 DVLNTVFNRF---ESYGQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTAVTCRIPSAE 818


>gi|307310979|ref|ZP_07590624.1| histidine kinase [Sinorhizobium meliloti BL225C]
 gi|307322010|ref|ZP_07601389.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306892348|gb|EFN23155.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306899659|gb|EFN30286.1| histidine kinase [Sinorhizobium meliloti BL225C]
          Length = 826

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/780 (49%), Positives = 518/780 (66%), Gaps = 9/780 (1%)

Query: 17  CTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLL 76
               + ++  F  + G++   +I  I LIRQR ++  +  E  S LS+   ++S++ +L+
Sbjct: 44  SIFGTSEVVTFSVLIGVISAAMISAIWLIRQRGNIEAENRELRSNLSDANQRISRFQALI 103

Query: 77  TENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK 136
            + N   ++WDG  E PE +GQL      PQ D D L+F  W+K     +L KA E LR 
Sbjct: 104 ADKNRRIVIWDGLAERPEFLGQLPAETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRA 163

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
           + QSFDLV ETQ +  ++ +GRVSG  AF+R ++L+ + +ELAE  L+  +L   +S F+
Sbjct: 164 QAQSFDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFR 223

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            L D++D   W R   G + W N +Y    ET+      A+ E R+L     ++R+ + S
Sbjct: 224 TLLDAVDLPAWQRGGDGRLEWVNAAYANAVETQSAST--AVAEERELLATTARERIRAVS 281

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEIL 312
            L+  F + VST+  GN   + +V      G AGIAIDVS    V ++L        E L
Sbjct: 282 TLQTPFRDKVSTVVRGNRTFFDVVDARTPAGSAGIAIDVSGIEAVREELARTLKSHAETL 341

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            +L   +AIFD N+ LQF+N++F  LW++D+ FL   P N E+L+ LR+  KLPEQLNWK
Sbjct: 342 EHLATPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEVLDRLRAGGKLPEQLNWK 401

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
            WK +  SVY++ +T  D WHLPNGQTL V  T+ P+GG  W+FENLT +VDLET+YNTL
Sbjct: 402 QWKTSALSVYQAIDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETRYNTL 461

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           V+VQGETIDHL+EGVAVFGPDGRI+LSNPAFR++W   E    PGTHIR I   C   Y+
Sbjct: 462 VQVQGETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEAQPGTHIRAIEQACLASYD 521

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           + DGW  FA IITSFDDER S +G LEL +  +L+Y++IPLPNAQTMLTFVN+TDSVR E
Sbjct: 522 QPDGWKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVE 581

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RALTEKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT   G LN +Q++YV++
Sbjct: 582 RALTEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGELNERQAEYVDH 641

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS++LL +VNDILDLATVDAGI++L  S + L DL+++V Q +  ++ E+ + ++  
Sbjct: 642 IATSSSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQMGDRLVESGVSLRTD 701

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   LG   AD+QRL QIF K+L+NA +F+  GST+ LK  R+  DF FSV + G  IP+
Sbjct: 702 APDNLGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGSDFAFSVTDTGPGIPQ 761

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           D+  +VFNRF      GQR G GLGLSIVESF++LH G+VSI S +   T + CRIPS E
Sbjct: 762 DVLNTVFNRF---ESYGQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTAVTCRIPSAE 818


>gi|227823897|ref|YP_002827870.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234]
 gi|227342899|gb|ACP27117.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234]
          Length = 827

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/780 (49%), Positives = 518/780 (66%), Gaps = 9/780 (1%)

Query: 17  CTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLL 76
               + ++  F  + G++   ++  I LIRQR ++  +     + LS+   ++S++ +L+
Sbjct: 45  SIFGTSEVVTFSVLIGVISAAMLSAIWLIRQRGNIEAENRALRADLSDANQRISRFQALI 104

Query: 77  TENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK 136
            + N   +VWDG  E PE +GQL      PQ D D L+F  W+K     +L KA E LR 
Sbjct: 105 ADKNRRIVVWDGLAERPEFLGQLPLETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRA 164

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
           + QSFDLV ETQ +  ++ +GRVSG  AF+R ++L+ + +ELAE  L   +L   +S F+
Sbjct: 165 QAQSFDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLDRDQLHVSLSTFR 224

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            L D++D  VW R   G + W N +Y +  +        A  E R+L     ++++ + S
Sbjct: 225 TLLDAIDLPVWQRGADGKLEWVNEAYAEAVDARS--PAAAASEGRELLATAAREKIRAVS 282

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEIL 312
           + E  F + +ST+  GN   + +V      G AGIAIDVS    V ++L        E L
Sbjct: 283 SFETPFRDKLSTVVKGNRTFFDVVDARTHAGSAGIAIDVSGIEAVREELARTLKSHAETL 342

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            +L   +AIFD N+ LQF+N++F  LWE+D+ FL   P N E+L+ LR+ NKLPEQLNWK
Sbjct: 343 DHLATPVAIFDGNQRLQFYNQAFQRLWELDMGFLERKPDNGEVLDRLRAGNKLPEQLNWK 402

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
            WK N  SVY++ +T  D WHLPNGQTL V  T+ P+GG  W+FENLT +VDLE +YNTL
Sbjct: 403 QWKANALSVYQALDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLEIRYNTL 462

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           V+VQGETIDHL+EGVAVFGPDGRI+LSNPAFR++W   E    PGTHIR +   C   Y+
Sbjct: 463 VQVQGETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISEVEAKPGTHIRAVEQACLSSYD 522

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           + DGW  FA IITSFDDER S +G LEL +  +L+Y++IPLPNAQTMLTFVN+TDSVR E
Sbjct: 523 QPDGWKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVE 582

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RALTEKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT   G+LN +Q++YV++
Sbjct: 583 RALTEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPAFGALNDRQAEYVDH 642

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS +LL +VNDILDLATVDAGI++L+ S + L DLL++V Q +A ++ E+   +++ 
Sbjct: 643 IATSSALLLTIVNDILDLATVDAGIVELDMSEVNLLDLLDDVAQQMADRLTESGASLRID 702

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   LG  VAD+QRL Q+F K+L+NA +F+  GS + LK  R+ GDF+FSV + G  IP+
Sbjct: 703 AADNLGRIVADQQRLKQVFIKLLTNAANFAPDGSAIDLKCRREGGDFVFSVSDTGPGIPQ 762

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           D+  +VFNRF      GQR G GLGLSIVESF++LH G VSI S +   T + CRIPS E
Sbjct: 763 DVLNTVFNRF---ESYGQRGGAGLGLSIVESFVSLHHGTVSIRSKEGEGTEVTCRIPSAE 819


>gi|209551534|ref|YP_002283451.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537290|gb|ACI57225.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 861

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/759 (52%), Positives = 530/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLESESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK      L KA ++LR   QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPPETGAPQ-DGEFLAFGLWLKSRSAADLEKAIDRLRDGAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y +  E      Q+AI E R++     ++R+ ++   E  F +T+ST+ HGN  
Sbjct: 275 TWVNQAYGEAVEARS--PQQAINEGREMLTTVARERIRATVTPESPFHDTISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AGIAIDVS    V  +L        E L +L   +AIFD +R LQF+
Sbjct: 333 FFDVVDVRLPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGDRRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDGWKAFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++HE+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +G+++ L+  R+  DF+FSV + G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGTSISLECHREGTDFVFSVSDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|116249796|ref|YP_765634.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254444|emb|CAK05518.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 861

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/759 (52%), Positives = 529/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK     +L KA ++LR E QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPPETGAPQ-DGEFLAFGLWLKSRSASELEKAIDRLRDEAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD  G +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPVGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y +  E      Q+AI E R++     ++R+ +++  E  F + +ST+  GN  
Sbjct: 275 TWVNQAYGEAVEARS--PQQAINEGREMLTTVARERIRATTTPESPFHDKISTVVRGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AGIAIDVS    V  +L        E L +L   +AIFD +R LQF+
Sbjct: 333 FFDVVDVRVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGDRRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACTPSYDRPDGWKTFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G L  +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTPGVGPLTERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++HE+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +G+++ L+  R+  DF+F+V + G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGTSISLECHREGTDFVFAVSDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|241206973|ref|YP_002978069.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860863|gb|ACS58530.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 861

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/759 (52%), Positives = 530/759 (69%), Gaps = 8/759 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK     +L KA ++LR E QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPPETGAPQ-DGEFLAFGLWLKSRSASELEKAIDRLRDEAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD  G +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPVGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y +  E      Q+AI E R++     ++R+ +++  E  F + +ST+ HGN  
Sbjct: 275 TWVNQAYGEAVEARS--PQQAINEGREMLTTVARERIRATTTPESPFHDKISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFH 331
            + +V V    G AGIAIDVS    V  +L        E L +L   +AIFD  R LQF+
Sbjct: 333 FFDVVDVRVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIFDGERRLQFY 392

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++FV LWE+D+AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D 
Sbjct: 393 NQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQTDL 452

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLPNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFG
Sbjct: 453 WHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFG 512

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PDGRI+LSNPAFR+LW   E    PGTHIR +   C+  Y++ DGW  FA +ITSFDDER
Sbjct: 513 PDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDQPDGWKTFAELITSFDDER 572

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN 
Sbjct: 573 RSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKND 632

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FVQHVSYELRSPLTNIIGFTDLL+T  +G L  +Q++Y+++IS SS++LL LVNDILDLA
Sbjct: 633 FVQHVSYELRSPLTNIIGFTDLLRTPGVGPLTERQAEYIDHISTSSSVLLTLVNDILDLA 692

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           TVDAGIM+LNY+ I LNDLL++V   IA ++HE+ + +++ +   LGS VAD QRL QI 
Sbjct: 693 TVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQIL 752

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            K+LSNA +FS +G+++ L+  R+  DF+FSV + G  I  DM  +VF+RF + A  G+R
Sbjct: 753 LKLLSNAANFSPEGTSISLECHREGTDFVFSVGDRGPGISPDMIATVFDRFATGAKSGKR 812

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+SF++LH G V+I S     TT+ CRIPS
Sbjct: 813 GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPS 851


>gi|150398438|ref|YP_001328905.1| histidine kinase [Sinorhizobium medicae WSM419]
 gi|150029953|gb|ABR62070.1| histidine kinase [Sinorhizobium medicae WSM419]
          Length = 826

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/780 (48%), Positives = 513/780 (65%), Gaps = 9/780 (1%)

Query: 17  CTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLL 76
               + ++  F  + G++   +I  I LIRQR ++  +  +  S LS+    +S++ +L+
Sbjct: 44  SIFGTPEVVTFSVLIGVISAAMISAIWLIRQRGNIEAENRDLRSSLSDANQHISRFQALI 103

Query: 77  TENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK 136
            + N   ++WDG  +  E +G L      PQ D D L+F  W+K H   +L KA E LR 
Sbjct: 104 ADKNRRIVIWDGLADRAEFLGHLPVETGAPQDDRDFLAFGRWVKPHSAGQLEKAIEALRA 163

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
           + QSFDLV ETQ +  ++ +GRVSG  AF+R ++L+ + +ELAE  L+  +L   +S F+
Sbjct: 164 QAQSFDLVLETQRNEVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFR 223

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            L D++D   W R   G + W N +Y K  ET       A+ E R+L     + R+ + +
Sbjct: 224 TLLDAVDLPAWQRAGDGRLEWVNAAYAKAVETPSASL--AVAEERELLATAARDRIRAVA 281

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEIL 312
            L+  F + VST+  GN   + +V      G AGIAIDVS    V ++L        E L
Sbjct: 282 TLQTPFRDKVSTVVRGNRTFFDVVDARTPAGSAGIAIDVSGIEAVREELARTLKSHAETL 341

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            +L   +AIFD N+ LQF+N++F  LW++D+ FL   P N E+ + LR   KLPEQLNWK
Sbjct: 342 EHLATPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEMFDRLRDGGKLPEQLNWK 401

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
            WK N  SVY++ +T  D WHLPNGQTL V  T+ P+GG  W+FENLT +VDLET+YNTL
Sbjct: 402 QWKANALSVYQALDTQTDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLETRYNTL 461

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           V+VQGETIDHL+EGVAVFGPDGRI+LSNPAFR++W   E    PGTHIR I   C   Y+
Sbjct: 462 VQVQGETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGINETEAQPGTHIRAIEQACLASYD 521

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           + DGW  FA IITSFDDER S +G LEL +  +L+Y++IPLPNAQTMLTFVN+TDSVR E
Sbjct: 522 QQDGWKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQTMLTFVNITDSVRVE 581

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RALTEKNEALRKAD +KN FV HVSYELRSPLTNIIGF DLLKT   G LN +Q++YV++
Sbjct: 582 RALTEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGELNERQAEYVDH 641

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS++LL +VNDILDLATVDAGI++L  + + L DL+++V Q +  ++ E+ + ++  
Sbjct: 642 IATSSSLLLTIVNDILDLATVDAGIVELELAEVNLIDLIDDVTQQMGDRLVESGVSLRTD 701

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   LG   AD+QRL QIF K+L+NA +F+  GST+ LK  R+  DF FSV + G  IP+
Sbjct: 702 APDNLGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGSDFAFSVTDTGPGIPQ 761

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           D+  +VFNRF      GQR G GLGLSIVESF++LH G+VSI S +   T + CRIPS +
Sbjct: 762 DVLNTVFNRF---ESYGQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTEVTCRIPSAQ 818


>gi|254501085|ref|ZP_05113236.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11]
 gi|222437156|gb|EEE43835.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11]
          Length = 837

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/789 (35%), Positives = 441/789 (55%), Gaps = 7/789 (0%)

Query: 6   ATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEI 65
           A      G  +  +    + +FG + GM    +   I L+R R    +          ++
Sbjct: 41  AAADFISGT-LAAINPDTMVMFGALGGMCAFAVTAAIALVRHRAQSGQLTEALEQEKRDL 99

Query: 66  CDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYI 125
             ++ +  ++L  +    IVW G    P+I G L ++  +P+    LL+F +WL      
Sbjct: 100 KFRVDRLETMLNTDEQRVIVWTGNGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTAKCAG 159

Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
            L +  + L + G++F+   +T+    ++  GR +G    LR+  L G     AE   + 
Sbjct: 160 DLERHLDLLFRTGETFNTTLKTRTGSYVEALGRTTGGAVVLRLRDLTGERQAQAELQTRN 219

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
            K+S  + +   L D++    W RD  G+++WAN +Y +  E      Q A+ E      
Sbjct: 220 AKISGELHMLHALLDAMPAPAWQRDAEGNVIWANDAYAEAVEMPDA--QAAVKEGATFLD 277

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
              +  M      +  F   +  +  G  + ++I  V  + G AGIA+D+S+      +L
Sbjct: 278 AAARTAMAVQRNEDGCFSARIPIVASGQRRVFEITDVNANVGGAGIAVDISELEQAQKEL 337

Query: 306 THTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
               E     L  L  A+AI+  +R LQF+N +F +LW++D A L ++P +  +L+ LR+
Sbjct: 338 GRAEEFHGRTLDQLAAAVAIYSGDRKLQFYNAAFRQLWDLDPALLESHPEDGAVLDALRA 397

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           A KLPEQ +++ W+  +   Y+S E  +  WHLP+G+TL VI   +P+GG  +++EN+T 
Sbjct: 398 ARKLPEQADYRGWRNKMLEGYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTE 457

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q+DLE++YN L +VQGET+D+LSE VAVFG DG+++L NPAF  +W  EE +LS   H+ 
Sbjct: 458 QLDLESRYNALTRVQGETLDNLSEAVAVFGSDGKLRLWNPAFGRIWDLEEEQLSRFPHVN 517

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            + + C+    E   W+  A+ +T   D R      LE  + +VL+Y+ +PLP+  T++T
Sbjct: 518 EVVSACALNDYEKTAWEQLASSVTGLVDNRTQNVSRLERHNGAVLDYATVPLPDGGTLVT 577

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           FV+VTDSV  ERAL EKNEAL +AD+IKN+F+QHVSYELRSPLTNIIGF  LL   K G 
Sbjct: 578 FVDVTDSVNVERALLEKNEALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGD 637

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  KQ +Y +YI +SS+ LL ++NDILDLAT+DAGIM+L+   + L   +    + +  +
Sbjct: 638 LTEKQGEYADYIQSSSSALLAIINDILDLATLDAGIMELDLREVDLASTVEAAVEGLKDR 697

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + E  I ++      +G+ +AD +RL Q+   ++SNA+ +S     V +   RD+    F
Sbjct: 698 IAEARINLRTQVPDNIGNMIADEKRLRQVLFNLISNAVRYSEPDGVVDISCDRDDDKVTF 757

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V+++G  IP ++   VFNRFV +    +R+G GLGL+IV+SF+ LHGG V I S     
Sbjct: 758 VVQDHGLGIPAEILTQVFNRFVGHDTGARRQGAGLGLAIVKSFVELHGGTVDIDSVVGKG 817

Query: 782 TTINCRIPS 790
           TT+ C  P+
Sbjct: 818 TTVTCVFPA 826


>gi|118590595|ref|ZP_01547997.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM
           12614]
 gi|118437058|gb|EAV43697.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM
           12614]
          Length = 814

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/794 (34%), Positives = 447/794 (56%), Gaps = 6/794 (0%)

Query: 2   MAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
           ++  +            +    + +FG + GM    +   + L+R R       +     
Sbjct: 13  LSCGSAAADMLADTTAAISPDNMILFGALGGMCAFAVTASVALVRHRKQSGLLTDALEKE 72

Query: 62  LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121
            S++  ++ +  ++L  +    IVW G    P+I G L ++  +P+    LL+F +WL  
Sbjct: 73  KSDLKFRVDRLEAMLNTDEQRVIVWTGNGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTA 132

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
                L +  + L + G++F    +T+    ++  GR +G    LR+  L G     AE 
Sbjct: 133 KCAGDLERHLDMLFRTGEAFTTTLKTRTGTYVEALGRTTGGAVVLRLRDLTGERQMQAEL 192

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             +  K+S  + +   L D++    W RD  G+++WAN +Y +  +        A+ E  
Sbjct: 193 AARNAKISGELHMLHALLDAMPAPAWQRDAEGNLIWANQAYAEAVDMTDADL--AVKEGA 250

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
                  +  M      +  F   +  +  G  + +++  V  + G AGIA+D+S+    
Sbjct: 251 SFLDAAARTAMAVQRTEDGCFNARIPIVASGERRVFEVTDVNANVGGAGIAVDISELEQA 310

Query: 302 NDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
             +L    E     L  L  A+AI+  +R LQF+N +F +LW++D AFL + P +  +L+
Sbjct: 311 QKELGRAEEFHGRTLDQLAAAVAIYSADRKLQFYNAAFRQLWDLDPAFLESRPEDSAVLD 370

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            LR+A K+PEQ +++ W+  +   Y+S E  +  WHLP+G+TL VI   +P+GG  +++E
Sbjct: 371 ALRAARKIPEQADYRVWRNKMMESYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYE 430

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           N+T Q+DLE++YN L +VQGET+D+LSE VAVFG DGR++L NPAF  +W  EE++L+  
Sbjct: 431 NVTEQLDLESRYNALTRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGRIWGLEEDQLTEL 490

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            H++ + + C+    E D W+  A  +T   D R      LE  +  V++Y+ +PLP+  
Sbjct: 491 PHVKEVVSACTLSETERDAWEQLAGNVTGLLDNRTQKVSRLERHNGDVVDYATVPLPDGG 550

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T++TFV+VTDSV  ERAL EKNEAL +AD+IKN+F+QHVSYELRSPLTNIIGF  LL   
Sbjct: 551 TLVTFVDVTDSVNVERALLEKNEALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADP 610

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K G L+ KQS+Y +YI +SS+ LL ++NDILDLAT+DAGIM+L+   + +   +    + 
Sbjct: 611 KFGELSDKQSEYADYIQSSSSALLAIINDILDLATLDAGIMELDLGEVDVAPTVAAAVEG 670

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  ++ E  I ++    G +G  VAD +RL Q+   ++SNA+ +S     V +  +R++ 
Sbjct: 671 LKDRIAEARINLRTHVPGDIGMMVADEKRLRQVLFNLISNAVRYSEPDGVVDVSCSREDD 730

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              F V+++G  IP ++   VFNRFV +    +R+G GLGL+IV+SF+ LHGG V I S+
Sbjct: 731 KVTFVVQDHGYGIPAEILTQVFNRFVGHDTGSRRQGAGLGLAIVKSFVELHGGTVDIQSA 790

Query: 778 DEGVTTINCRIPSK 791
           +   TT+ C  P++
Sbjct: 791 EGKGTTVTCVFPAR 804


>gi|328545814|ref|YP_004305923.1| Alkaline phosphatase synthesis sensor protein phor [polymorphum
           gilvum SL003B-26A1]
 gi|326415554|gb|ADZ72617.1| Alkaline phosphatase synthesis sensor protein phor [Polymorphum
           gilvum SL003B-26A1]
          Length = 807

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/793 (35%), Positives = 445/793 (56%), Gaps = 6/793 (0%)

Query: 2   MAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
           +A  +T+     +    L + KI   G + G     +   +  +R R +   ++      
Sbjct: 6   LACQSTLAAAAPLAEIGLSADKIVWLGALGGACAFAVTAAVAFLRTRRAGDVRMEALARE 65

Query: 62  LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121
             ++   + +  S+L       I W G ++ P + G + +    P+    LL+F +WL+ 
Sbjct: 66  SRDLRLYVDRLESMLNTEEQRMIAWVGAEDRPRVWGVMPESSGAPRAPGQLLAFGSWLEP 125

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
                L     +LR  G +F +   T+    ++  GR +G  A LR+  L G     AE 
Sbjct: 126 KSAEVLEAHLGRLRSAGDAFAVTLTTRKRTYVEAVGRTAGGVAVLRLRDLTGERQAQAEL 185

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             +  +LS  + +   L +++    W RD  G + WAN +Y      +      A+ ++ 
Sbjct: 186 AARNARLSGELHMLHALLEAMPAPAWQRDAEGRVTWANSAYACA--VDVADAATAVRDNV 243

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
                  ++ M      +  F   +  +  G  + +++  V  + G A +AID+S+   +
Sbjct: 244 DFLDAAGREAMSRDRDDDGCFRARMPIVAAGERRVFEVTDVSANVGGAALAIDISELDRL 303

Query: 302 NDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
             +L  T E     L  L  A+AI+  +R LQF+N +F  LW +D AFL   P +  +L+
Sbjct: 304 KKELRRTEEFHGSTLDQLATAVAIYGGDRKLQFYNSAFRALWNLDTAFLDGRPEDGAVLD 363

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            LR+A KLPEQ +++ W+  +   Y+S E  +  WHLP+G+TL VI   +P+GG  +++E
Sbjct: 364 ALRAARKLPEQADYRVWRTKMLESYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYE 423

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           N+T ++DLE++YN L++VQGET+D+LSE VAVFG DGR++L NPAF S+W   E++L+  
Sbjct: 424 NVTERLDLESRYNALIRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGSIWDLPEDQLANM 483

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            HI ++   C+   +E   W   A  +T   D R  L G +E    +VL+Y+ +PLP+  
Sbjct: 484 PHINDVVEWCAARPDEVQAWSQLAGSVTGLVDSRTHLAGRMERRDGTVLDYATVPLPDGG 543

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T++TFVNVTDSV  ERAL EKNEAL +AD++KN+F+QHVSYELRSPLTNIIGF  LL   
Sbjct: 544 TLVTFVNVTDSVNVERALVEKNEALEQADQLKNAFIQHVSYELRSPLTNIIGFAQLLSDP 603

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K G L+ KQ +Y +YI +SS+ LL ++NDILDLAT+DAGIM+L+   + + D +    + 
Sbjct: 604 KFGELSRKQGEYADYILSSSSALLAIINDILDLATIDAGIMELDLGEVDVADTVAAAVEG 663

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  ++ +  I ++    G +G+  AD +RL Q+   +++NA+ +S +G  + +   R +G
Sbjct: 664 LKDRLADAKIVLRTHVPGDIGTLYADERRLRQVLFNLIANAVRYSDEGGVIDVTCGRKDG 723

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +F+VK++G  IP++M   VF+RFV +    +RRG GLGLSIV+SF+ LHGG V I S 
Sbjct: 724 AVVFTVKDHGCGIPQEMIDQVFSRFVGHDAGTKRRGAGLGLSIVKSFVELHGGQVEIQSR 783

Query: 778 DEGVTTINCRIPS 790
           +   TT+ C  P+
Sbjct: 784 EGVGTTVTCTFPA 796


>gi|163757504|ref|ZP_02164593.1| putative sensor histidine kinase protein [Hoeflea phototrophica
           DFL-43]
 gi|162285006|gb|EDQ35288.1| putative sensor histidine kinase protein [Hoeflea phototrophica
           DFL-43]
          Length = 869

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/793 (43%), Positives = 491/793 (61%), Gaps = 18/793 (2%)

Query: 9   GIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQ 68
              +      + S ++  F  + G +   +I  I LIR+R  +  +     + L++   Q
Sbjct: 76  AFAQSAGGFKISSLEVVNFAMVIGAISAAMISAIWLIRERAKIDAENVALRTALADSHAQ 135

Query: 69  LSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLS 128
           LS+Y SL+ + +   +VWDG     E++G L      PQ   D L+F  WL+      L+
Sbjct: 136 LSRYQSLIVDRDRQIVVWDGVGVPAEVLGNLSPATGAPQKPDDFLAFGRWLEPRSAASLN 195

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
           ++ + LR + + FDL+ ET     I+ +GRVSG  AF+R ++L  + +ELAE   +  +L
Sbjct: 196 ESIDLLRAQAERFDLIVETVRGHVIEAQGRVSGGRAFVRFVALSNVRAELAELKTERDRL 255

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
              +  F+ L D +D   W R     +LW N +Y +  E  G      I    +L     
Sbjct: 256 LASVDTFQTLLDVIDMPAWLRGSDAKLLWVNNAYVRAVE--GPDRSDTIERGMELLGTAA 313

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH- 307
           ++++ +++  E+ F + VST+  G+ +  ++  V    G AG+A+DVS E  + ++L   
Sbjct: 314 REKIRAAATPERPFLDRVSTVIQGHRRFLEVADVKTPGGNAGLALDVSVEEDLREELRRT 373

Query: 308 ---TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                E L +L   +AIFD+++ LQFHN++F +LWE+D+ FLA  P N E LE LR+  K
Sbjct: 374 IQSHSETLDHLATPVAIFDRDQRLQFHNQAFQQLWELDIPFLARRPDNGEFLERLRADGK 433

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
           LPE   W+ WKE + SVY+S ET    WHLP+GQTL+V   ++P+GG  W+FENLT +VD
Sbjct: 434 LPEPHAWRDWKEQMLSVYRSVETTPHLWHLPDGQTLNVFANAHPQGGVTWVFENLTEKVD 493

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           LETKYNTL++VQGETIDHL+EGV VFGPDGRI+LSNP+FR+LW   E ++ PGTHIR+I 
Sbjct: 494 LETKYNTLLQVQGETIDHLAEGVGVFGPDGRIRLSNPSFRALWGLTEEQVKPGTHIRDIT 553

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           A C   Y E DGW LFA  ITSF++ER+S  G +EL++  +L+Y+++PLPN QTM+ FVN
Sbjct: 554 AACEPSYREPDGWKLFAGEITSFNEERRSRDGRIELVTGLILDYAVVPLPNGQTMVAFVN 613

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VTDSV AER LTE NEALRKAD +KN FV HVSYELRSPLTNIIGFTDLLKT  +G L  
Sbjct: 614 VTDSVDAERMLTETNEALRKADALKNDFVNHVSYELRSPLTNIIGFTDLLKTPGVGDLTE 673

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q++Y+++IS SS++LL +VNDILDLATVDAGIM+L  + + ++ LL+E    IA    E
Sbjct: 674 RQAEYLDHISTSSSVLLTIVNDILDLATVDAGIMQLEIAEVNIDTLLSEAADQIADWFKE 733

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           N ++++  S     + + D QRL QI  K+L NA +F+ +GS V L  A ++   +FSV 
Sbjct: 734 NGLKLETESANAPATMMGDYQRLKQILFKLLMNAANFAPEGSVVRLGCAMEDESIVFSVA 793

Query: 725 NNGSSIPEDMCKSVFNRFVS------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           ++G  IPE   K VF RF +          G         SIV+SF++LH G VS+  S+
Sbjct: 794 DSGPGIPESARKDVFARFETHGQGGRRRGAGLGL------SIVQSFVSLHNGTVSVEDSE 847

Query: 779 EGVTTINCRIPSK 791
              TTI CR P+K
Sbjct: 848 GSGTTILCRFPTK 860


>gi|307942838|ref|ZP_07658183.1| multi-sensor signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
 gi|307773634|gb|EFO32850.1| multi-sensor signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
          Length = 812

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/778 (36%), Positives = 450/778 (57%), Gaps = 6/778 (0%)

Query: 18  TLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLT 77
           ++ +  + + G   GM    I   +  +RQR +        +   SE+  ++ +  S+L 
Sbjct: 27  SIDANTMMLLGAFGGMCAFAITASVAYLRQRRAAGALCEHLHREKSELKLRVDRLESMLN 86

Query: 78  ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137
            +    +VW G    P++ G L ++  +P+    LL+F +WL       L +  + L   
Sbjct: 87  SDEQRIVVWTGSGNAPQVWGVLPEQSGVPRATNQLLAFGSWLSAKCASDLERRLDALFST 146

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           G++F     T+    ++  GR +G    LR+  + G     AE + +  K+S  + +   
Sbjct: 147 GETFTTTLTTRVGTFVEAIGRTTGGAVVLRLRDMTGERQIQAEISARNAKISGELHMLHS 206

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           L D+L    W RD  G ++W N +Y    +      + AI E         +     +  
Sbjct: 207 LLDALPSPAWQRDAEGKLIWVNQAYATAIDAPD--QKAAIKEGDDFLDSAARDAAGKNRN 264

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILH 313
            +  F   +  +  G  + +++  V  + G AG+AID+S+   V  +L+   E     L 
Sbjct: 265 EDGCFTARIPMVAAGERRVFEVTDVAANVGGAGVAIDISELDQVRRELSRAEEFHGRTLD 324

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            L  A+AI+  +R LQFHN +F +LWE++  FL ++P +  +L+ LR+A KLPEQ +++ 
Sbjct: 325 QLVTAVAIYGGDRKLQFHNEAFRQLWELEPVFLESSPEDGAVLDALRAARKLPEQADYRV 384

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           W+  +   Y+S ET +  WHLP+G+TL V+ + +P+GG I+++EN+T ++DLE++YN L+
Sbjct: 385 WRNTMLESYQSVETKEHWWHLPDGRTLRVVASPHPQGGVIYIYENVTERLDLESRYNALI 444

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +VQGET+++LSE VAVFG DGR++L NPAF  +W  EE+RLS   H+  + +TC+    E
Sbjct: 445 RVQGETLENLSEAVAVFGSDGRLRLWNPAFSRIWNFEEDRLSQLPHVNQLESTCALSPAE 504

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            + WD  +A +TS  + R  +   +E    +VL+Y+ +PLP+  T++TFV+VTDSV  ER
Sbjct: 505 QEAWDRLSANVTSLLENRTPVANRMERHDGAVLDYATVPLPDGGTLVTFVDVTDSVNVER 564

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL EKNEAL +ADE+KN+F+QHVSYELRSPLTNIIGF  LL   K G L+ KQ +Y +YI
Sbjct: 565 ALVEKNEALEQADELKNAFIQHVSYELRSPLTNIIGFAQLLTDPKFGDLSEKQGEYADYI 624

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +SS+ LL ++NDILDLAT+DAGIM+L  S + +   +    + +  ++ E+ I ++   
Sbjct: 625 RSSSSALLAIINDILDLATLDAGIMELELSEVDVAATVEAAVEGLKDRLAESRINLRTDV 684

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +GS VAD +RL Q+   ++SNA+ +S +   V +   R +    F VK++G  IP D
Sbjct: 685 PDNIGSMVADEKRLRQVLYNLISNAVRYSEEEGVVDVVCNRKDEAVEFVVKDHGCGIPAD 744

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +   VFNRFV +    +R+G GLGLSIV+SF+ LHGG V I+S +   TT+ C  P+K
Sbjct: 745 ILTQVFNRFVGHNAGARRQGAGLGLSIVKSFVELHGGKVDINSVEGKGTTVTCSFPAK 802


>gi|254470855|ref|ZP_05084258.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio
           sp. JE062]
 gi|211959997|gb|EEA95194.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio
           sp. JE062]
          Length = 817

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/801 (35%), Positives = 455/801 (56%), Gaps = 12/801 (1%)

Query: 1   MMAGMATIGIGKGIEICTLFSC------KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A +   G  + ++I    S       K+      AG+ L  +   ++L+R R + +  
Sbjct: 9   VFALLGAAGFSQAMDILPALSGSSVDAFKVVWVAATAGIALYAVAASVVLVRIRRNDSLS 68

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
           + +     ++   ++ +  SLL   + L +VWDG+ + P + G L + +++    + L+ 
Sbjct: 69  ILQLRQDRADAMARIDRLESLLETEDSLLLVWDGEAKHPGVAGHLPENLELSGGLSQLVE 128

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           FE WL       L    E LR  G+ F L   T +   ++  G  +G  A LR+  L G 
Sbjct: 129 FETWLDVKSAEALRAFLEHLRGHGEVFRLTLTTIDGVYLEASGHTAGGLAVLRLRDLTGD 188

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
               A  + + K+L   IS    L D+L    W RD  G ++W N +Y    E E    +
Sbjct: 189 RQLSARLSEQNKELREQISSLHSLLDALPGPAWQRDHHGQLVWVNTAYVDAVEAEST--R 246

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
             + +  +L + + + ++      +  +   +  +  G  + +++  V +  G AG+A D
Sbjct: 247 TVVDDQIELLEAKGRNKLNMMRQTDGVYHSPMPVVAAGERRVFELTDVNSEHGNAGLAQD 306

Query: 295 VSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +S+   V  QL  T E     L  L   +A+F  +  LQF+N ++  LW+ID +FL T P
Sbjct: 307 ISELERVQGQLRRTLESHTRTLDQLQTPVAVFGADHRLQFYNAAYRSLWDIDQSFLETKP 366

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              ELL+ LR+A KLPEQ +++ W+      Y++ +     WHLP+G+TL VI + +P+G
Sbjct: 367 EEGELLDALRAARKLPEQADYRGWRTKHLECYQALDAQAFWWHLPDGRTLRVIASPHPQG 426

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  + +EN+T Q+DLE+++N L +VQ ET+DHL+E VAVFG +GR++LSNPAF  +W   
Sbjct: 427 GVTYFYENVTEQLDLESRFNALTRVQRETLDHLTEAVAVFGSNGRMRLSNPAFAEIWGLS 486

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           +  L    H+ ++   C     +SD W   A  +T   D R S+ G +E +  SV++Y  
Sbjct: 487 QEFLEGAPHVNDLLDNCRELMGDSDRWQELARGVTGLSDNRTSVSGRMERIDGSVIDYVT 546

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP+  T+LTFVNVTD+V  ERAL   N+AL++AD++KN+F+QHVSYELRSPLT IIGF
Sbjct: 547 VPLPDGGTLLTFVNVTDTVNVERALHATNDALQEADQLKNAFIQHVSYELRSPLTTIIGF 606

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL  +K G L+ KQ +Y +YI +SS+ LL+++NDILDLATVDAGIM+L  S + +   
Sbjct: 607 AQLLGDAKFGDLSPKQEEYTDYILSSSSALLHIINDILDLATVDAGIMELEISEVDVAQT 666

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++E  + +  ++ E++I ++      +G   AD +RL Q+   +LSNA+ +S KG  V +
Sbjct: 667 VSEAVEGLKDRLVESDITLRTHMPDDIGILKADERRLRQVLFNLLSNAIRYSDKGGLVDI 726

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
              R+  +  F +K++G+ IP++M + VF+RFV     G R+GVGLGLSIV+SF+ LHGG
Sbjct: 727 SCQREENEIRFRIKDHGAGIPQEMLEQVFSRFVGRGAGGNRQGVGLGLSIVKSFVELHGG 786

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            V I+S +   TT++C  P +
Sbjct: 787 TVDITSEEGQGTTVDCTFPLE 807


>gi|110635903|ref|YP_676111.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110286887|gb|ABG64946.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 843

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/800 (38%), Positives = 450/800 (56%), Gaps = 22/800 (2%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60
           +MA     G  +     ++ + ++      AG+L    +  I LIR+R   A +  E  +
Sbjct: 44  VMAMAQQEGAARAAAGLSISTIEVIQLSVFAGVLGAAFLSAIWLIRERGRTASENTELKN 103

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120
            ++E+   LS+  +LL   +   IVW G ++ P ++G L     +P   +  L+F  WL 
Sbjct: 104 RMAELSGALSRAEALLNLKDQRIIVWQG-NQRPIVLGDLSPESGVPHDRSTFLAFGRWLT 162

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
                 L +AT  LR+ G +FDLVAET+     +++GR S   A +R LSL    +E A 
Sbjct: 163 PRSASALDRATAALREAGTAFDLVAETREGLLFEVQGRKSALHAIVRFLSLSAAQAENAR 222

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
             L  ++L         L ++L+   W RD+AG + W N +Y +  E +      A  E 
Sbjct: 223 LKLDHQRLQADHESILGLINALEMPFWLRDEAGRLKWVNSAYAQMVEAKDPSAAAA--EG 280

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
           R+L     +  +      +  F E +ST+  G+ + + +    +  G AGIA+D S    
Sbjct: 281 RELLPSSARAAVAQHHQEQPVFREPLSTVVGGDRRLFAVTDYASQKGSAGIALDTSDVDA 340

Query: 301 VNDQ----LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +  +    L    + L  LT A+AIFD ++ L+F+N++F +LW +D  FL   P    LL
Sbjct: 341 LRREYESTLRSHADTLDQLTTAVAIFDADQKLKFYNQAFQKLWALDAGFLDAGPEYALLL 400

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           + LRS  KL EQ  W+ WKE + S Y++ E  +  WHLP+G+T+ V+ T   +GG  W+F
Sbjct: 401 DRLRSDGKLAEQPEWRRWKEQLLSAYRAVEPQEHWWHLPDGRTIRVVATPQSKGGVTWVF 460

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ENLT ++DLE++YN +VKVQ ET+D+L+EGVAVFGPDGR++LSNPAFR+LW   E  + P
Sbjct: 461 ENLTEKIDLESRYNAVVKVQRETLDNLAEGVAVFGPDGRLRLSNPAFRTLWGIPEKLIGP 520

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             HI  + A C     ES   + F   +T FDDER+   G  EL++ + L Y+I+ LPN 
Sbjct: 521 DIHISILKAACDPVAMESPWAE-FVGAVTGFDDERRDKHGRTELINGAALHYAIVHLPNG 579

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q MLTFV+VTDSV  ERAL EKNEAL KAD +KN FVQHVSYELRSPLTNIIGFT+LL  
Sbjct: 580 QVMLTFVDVTDSVNVERALKEKNEALEKADRLKNDFVQHVSYELRSPLTNIIGFTELLGQ 639

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G LN +Q +YV++I +SS++LL +VNDILDLATVDAGIM+L    + +  L+     
Sbjct: 640 ETTGPLNPRQREYVDHIGSSSSLLLTIVNDILDLATVDAGIMELEIGEVEIRPLVKAATD 699

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +A ++ E+ IR++V  D    SF AD  R+ QI   +LSNA +++ +G  + L A+   
Sbjct: 700 LVADRLREHRIRLEVTVDAAPVSFHADENRIRQILYNLLSNAANYAPEGGKITLSASGTG 759

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-------RGQRRGVGLGLSIVESFINLHG 769
               F V +NG  +  ++  ++F RF  +A                    IV+SF+ LHG
Sbjct: 760 NAIEFRVHDNGPGMSPEVLATIFKRFEPSAKGGRRRGAGLGLA-------IVKSFVELHG 812

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G V I ++    T + CR P
Sbjct: 813 GTVDIDTAPGRGTAVTCRFP 832


>gi|306843516|ref|ZP_07476117.1| histidine kinase [Brucella sp. BO1]
 gi|306276207|gb|EFM57907.1| histidine kinase [Brucella sp. BO1]
          Length = 859

 Score =  745 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 467/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 53  LFAASPAFAQGMDGARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 112

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 113 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 172

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 173 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 232

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y    +       
Sbjct: 233 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANAS-- 290

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 291 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 350

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 351 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 410

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 411 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 470

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 471 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 530

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 531 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 589

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 590 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 649

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 650 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 709

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 710 ISAAASRVSERLRDHNIGLDVDIADDVDMFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 769

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 770 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 822

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 823 FVELHGGRVEIDTGEERGTTVICRFPSE 850


>gi|39933159|ref|NP_945435.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39652784|emb|CAE25523.1| sensor histidine kinase with multiple PAS domains [Rhodopseudomonas
           palustris CGA009]
          Length = 848

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/780 (32%), Positives = 402/780 (51%), Gaps = 10/780 (1%)

Query: 19  LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE 78
           L   ++         L  +++  I+L+R R     +     + L  +  +  ++ +LL  
Sbjct: 63  LNRHEMMTLIIALAALGFSVMSAIMLVRTRQRAVAREAGLRADLQGLQAESDRFQALLFA 122

Query: 79  NNCLTIVWDGKDETPEIIGQLHQRIDI---PQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
              + I W   D  P++ G     + +    +    +L+F  WL     +++  A + L 
Sbjct: 123 EPQVLISWAAGDSRPQVSGDTALFLPLETQSRQPQRVLAFGTWLPPEPALQMDHAVDALL 182

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
            +G+ F L   T N  +I+  GR  G  A +RI  L G+  ELA+ T + K L     + 
Sbjct: 183 DKGEGFLLQLVTSNGRSIEAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEML 242

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           +    +  + +W R   G + +AN +Y + T+         IG + +L     +  +  +
Sbjct: 243 RGFATAAPWPIWTRRSDGTLSFANAAYARATDASDAADA--IGRNLELLDSGDRAALARA 300

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEI 311
                 +   +  +  G  + Y +  +  S G AGIA+D ++   +   L          
Sbjct: 301 LGDGYEYSGRLPIVVGGERRYYDVRALKVSGGSAGIAVDATETAALGAALERMADAHRRT 360

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L  L+  +A+FD  R L F+N S+ +LW++D  FL ++P +  +L+ LR+  KLPE+ ++
Sbjct: 361 LDQLSSGVAVFDAQRRLSFYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDF 420

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           K WK  +   Y++ E  KD W+LP+G+ + ++ T NP GG  ++F+++T  +DL+ +Y  
Sbjct: 421 KAWKNKLHEAYRAVEAEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGG 480

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L+ VQ ET+D+LSE VAVFG +G  +L NP F  +W      L    HI  I   C   +
Sbjct: 481 LIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLF 540

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           ++   W      IT  DD R  L   +E    SVL    +PLP+  TMLTF ++TD+   
Sbjct: 541 DDDVFWQALRGAITGIDDRRHVLLK-IERKDGSVLACKTMPLPDGATMLTFQDITDTENV 599

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERAL E+NEAL  AD IK  FV HVSYELRSPLT IIGF   L  S  G L  KQ++YV 
Sbjct: 600 ERALRERNEALETADRIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTEKQAEYVN 659

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           YI+ S+  L+ ++N+ILDLA++DAG M LN   I +   ++   + I  ++  + I +++
Sbjct: 660 YITTSTNALMAIINNILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQI 719

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  + SFV D +R++Q+   +L+NA+DFS    TV L   R      F+V ++G  I 
Sbjct: 720 DVDPAIESFVGDERRVVQVLYNLLANAIDFSPSQGTVRLTVRRGETRVAFTVTDSGPGIA 779

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               + +F+ F S+    + RG GLGLS+V SF+ LHGG V + S+    T++ C  P +
Sbjct: 780 PAFKEKMFDLFESDPQGSRHRGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFPIE 839


>gi|237816446|ref|ZP_04595439.1| sensory box histidine kinase [Brucella abortus str. 2308 A]
 gi|237788513|gb|EEP62728.1| sensory box histidine kinase [Brucella abortus str. 2308 A]
          Length = 870

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 64  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGGMGAALLSAGWLIRDRSKIANE 123

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 124 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 183

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 184 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 243

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 244 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 301

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 302 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 361

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 362 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 421

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 422 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 481

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 482 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 541

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 542 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 600

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 601 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 660

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 661 TELLQTPAFGSLNERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 720

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 721 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 780

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 781 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 833

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 834 FVELHGGRVEIDTGEERGTTVICRFPSE 861


>gi|254694720|ref|ZP_05156548.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
          Length = 859

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 469/808 (58%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR+R+ +A +
Sbjct: 53  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRERSKIANE 112

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 113 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 172

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 173 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 232

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 233 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 290

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 291 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 350

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 351 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 410

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 411 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 470

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 471 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 530

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 531 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 589

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 590 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGF 649

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 650 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 709

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 710 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 769

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 770 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 822

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 823 FVELHGGRVEIDTGEERGTTVICRFPSE 850


>gi|75674244|ref|YP_316665.1| histidine kinase [Nitrobacter winogradskyi Nb-255]
 gi|74419114|gb|ABA03313.1| histidine kinase [Nitrobacter winogradskyi Nb-255]
          Length = 838

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/777 (33%), Positives = 405/777 (52%), Gaps = 8/777 (1%)

Query: 19  LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE 78
           L    +       G+L  +++  ILL+R R   A       S L E+  +  ++ +LL  
Sbjct: 55  LSRQDLTALAMALGVLSFSVVAAILLMRTRIRAAANEQRLRSELRELQSEADRFRALLFV 114

Query: 79  NNCLTIVWDGKDETPEIIGQLHQRIDIPQT-DTDLLSFENWLKFHHYIKLSKATEKLRKE 137
              + I W   +E P+I G +   +         +L+F  WL     +++  A + LR  
Sbjct: 115 EPQILISWGAGEERPQISGDIALLLPQDAKQPLRILAFGTWLPPEPALQMDHAVDALRSA 174

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           G+ F L   T     ++  GR  G  A +RI  L G+  +LAE TL+   L     + + 
Sbjct: 175 GEGFLLNLVTSAGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAEMTLRHDSLLAETEMLRA 234

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
              +  + +W R + G + +AN +Y + TE        AI  + +L   E +  M  +  
Sbjct: 235 FATAAPWPLWARGKDGKLSFANQAYARATEAAD--SADAIQRNLELLDSEDRTAMSRALN 292

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILH 313
               F   +  +  G  + Y +  +    G AGIA+D S+   ++  L          L 
Sbjct: 293 DHATFAARLPIIIGGERRMYDVHALRTGGGSAGIALDASEATALSGALARMADAHRRTLD 352

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            L+  +A+FD  R L F+N S+  LW++D  FL  +P +  +L+ LR+  KLPEQ +++ 
Sbjct: 353 QLSSGVAVFDGQRRLAFYNDSYRRLWDLDRPFLDGHPDDSSVLDRLRAGRKLPEQPDFRA 412

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           WK  +   Y+++E  KD W+LP+G+ L ++ T NP GG  ++F+++T  +DL  +Y+ L+
Sbjct: 413 WKARLHEAYRANEAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLDLARRYDRLI 472

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            VQ ET+D L+E VAVFG +GR +L NPAF  +WK     L+   HI  + A C   +++
Sbjct: 473 NVQRETLDSLTEAVAVFGSNGRAQLFNPAFARMWKLSPEALAQQPHIDTVEAWCKPLFDD 532

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            D W      +T  D+ R ++   LE    S+L+   +PLP+  TMLTF ++TDS   ER
Sbjct: 533 DDAWRTIHKAVTGIDN-RTAVPLKLERKDGSILDCMTMPLPDGATMLTFHDITDSENVER 591

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E+N+AL  AD++K  FV HVSYELRSPLT IIGF  L+     G L  KQ++YV YI
Sbjct: 592 ALRERNDALEAADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLTEKQAEYVNYI 651

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           ++S+  LL L N+ILDLAT+DAG M L    + +   +    + I  ++  + I + V  
Sbjct: 652 TSSTDALLALTNNILDLATIDAGAMTLELGPVDVRKTIAAAAEGIQDRLTRDRIVLNVDV 711

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +G F+ D +R++Q+   +L+NA  FS   + + + A R      F+V + G  IP D
Sbjct: 712 DPDIGDFIGDERRIIQVLYNLLANAAGFSPPDAVITVSARRTEHSVRFAVMDEGPGIPPD 771

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    F+ F S A+  + RG GLGLS+V SF+ LHGG V    + +  T + C  P 
Sbjct: 772 VRDKAFDWFESYANGSRHRGAGLGLSLVRSFVELHGGRVHFDPAIKSGTRVVCDFPL 828


>gi|254718142|ref|ZP_05179953.1| histidine kinase [Brucella sp. 83/13]
 gi|306837656|ref|ZP_07470525.1| histidine kinase [Brucella sp. NF 2653]
 gi|306407214|gb|EFM63424.1| histidine kinase [Brucella sp. NF 2653]
          Length = 859

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 467/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 53  LFAASPAFAQGMDGARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 112

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 113 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 172

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 173 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 232

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y    +       
Sbjct: 233 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANAS-- 290

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 291 QVISEGRELFGAQARQRLERGRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 350

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 351 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 410

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 411 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 470

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 471 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 530

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 531 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 589

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 590 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 649

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 650 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 709

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 710 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 769

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 770 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 822

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 823 FVELHGGRVEIDTGEERGTTVICRFPSE 850


>gi|225626475|ref|ZP_03784514.1| sensory box histidine kinase [Brucella ceti str. Cudo]
 gi|294851326|ref|ZP_06791999.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026]
 gi|225618132|gb|EEH15175.1| sensory box histidine kinase [Brucella ceti str. Cudo]
 gi|294819915|gb|EFG36914.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026]
          Length = 870

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 64  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 123

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 124 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 183

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 184 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 243

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 244 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 301

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 302 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 361

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 362 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 421

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 422 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 481

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 482 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 541

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 542 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 600

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 601 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 660

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 661 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 720

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 721 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 780

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 781 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 833

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 834 FVELHGGRVEIDTGEERGTTVICRFPSE 861


>gi|261215049|ref|ZP_05929330.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|260916656|gb|EEX83517.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
          Length = 843

 Score =  742 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 469/808 (58%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR+R+ +A +
Sbjct: 37  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRERSKIANE 96

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 97  NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 156

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 157 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 216

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 217 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 274

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 275 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 334

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 335 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 394

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 395 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 454

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 455 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 514

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 515 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 573

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 574 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGF 633

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 634 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 693

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 694 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 753

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 754 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 806

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 807 FVELHGGRVEIDTGEERGTTVICRFPSE 834


>gi|62290941|ref|YP_222734.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82700852|ref|YP_415426.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus
           2308]
 gi|189025153|ref|YP_001935921.1| sensory box histidine kinase, hypothetical [Brucella abortus S19]
 gi|254690232|ref|ZP_05153486.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 6
           str. 870]
 gi|254731263|ref|ZP_05189841.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 4
           str. 292]
 gi|256258485|ref|ZP_05464021.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 9
           str. C68]
 gi|260546204|ref|ZP_05821944.1| histidine kinase [Brucella abortus NCTC 8038]
 gi|297247326|ref|ZP_06931044.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196]
 gi|62197073|gb|AAX75373.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 1
           str. 9-941]
 gi|82616953|emb|CAJ12057.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Bacterial sensor protein,
           C-terminal:Histidine kinase [Brucella melitensis biovar
           Abortus 2308]
 gi|189020725|gb|ACD73447.1| sensory box histidine kinase, hypothetical [Brucella abortus S19]
 gi|260096311|gb|EEW80187.1| histidine kinase [Brucella abortus NCTC 8038]
 gi|297174495|gb|EFH33842.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196]
          Length = 859

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 53  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGGMGAALLSAGWLIRDRSKIANE 112

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 113 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 172

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 173 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 232

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 233 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 290

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 291 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 350

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 351 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 410

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 411 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 470

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 471 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 530

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 531 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 589

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 590 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 649

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 650 TELLQTPAFGSLNERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 709

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 710 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 769

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 770 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 822

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 823 FVELHGGRVEIDTGEERGTTVICRFPSE 850


>gi|265983095|ref|ZP_06095830.1| histidine kinase [Brucella sp. 83/13]
 gi|264661687|gb|EEZ31948.1| histidine kinase [Brucella sp. 83/13]
          Length = 843

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 467/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 37  LFAASPAFAQGMDGARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 96

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 97  NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 156

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 157 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 216

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y    +       
Sbjct: 217 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANAS-- 274

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 275 QVISEGRELFGAQARQRLERGRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 334

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 335 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 394

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 395 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 454

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 455 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 514

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 515 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 573

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 574 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 633

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 634 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 693

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 694 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 753

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 754 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 806

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 807 FVELHGGRVEIDTGEERGTTVICRFPSE 834


>gi|316931476|ref|YP_004106458.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315599190|gb|ADU41725.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 837

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/781 (32%), Positives = 400/781 (51%), Gaps = 10/781 (1%)

Query: 19  LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE 78
           L   ++         L  +++  I+L+R R   A +     + L  +  +  ++ +LL  
Sbjct: 52  LNRHEMMTLIIALAALGFSVMSAIMLVRTRQRAAAREAGLRADLQGLQAESDRFQALLFA 111

Query: 79  NNCLTIVWDGKDETPEIIGQLHQRIDI---PQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
              + I W   D  P I G     +      +    +L+F  WL     +++  A + L 
Sbjct: 112 EPQVLISWIAGDSRPRISGDTALFLPAEPQSRQPQRILAFGTWLPPEPALQMDHAVDALL 171

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
            +G+ F L   T N  +I+  GR  G  A +RI  L G+  ELA+ T + K L     + 
Sbjct: 172 DKGEGFLLQLVTSNGRSIEAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEML 231

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           +    +  + +W R   G + +AN +Y + T+         IG + +L     +  +  S
Sbjct: 232 RGFATAAPWPIWTRRADGTLSFANAAYARATDASDAADA--IGRNLELLDTGDRAALARS 289

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEI 311
                 F   +  +  G  + + +  +    G AGIA+D ++   +   L          
Sbjct: 290 LGDSAEFTGRLPIVVGGERRYFDVRALKVPGGSAGIAVDATETAALGVALERMADAHRRT 349

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L  L+  +A+FD  R L+F+N S+ +LW++D  FL ++P +  +L+ LR+  KLPE+ ++
Sbjct: 350 LDQLSSGVAVFDAQRRLKFYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDF 409

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           K WK  +   Y++ E  KD W+LP+G+ + ++ T NP GG  ++F+++T  +DL+ +Y  
Sbjct: 410 KAWKNKLHEAYRAVEADKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGG 469

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L+ VQ ET+D+LSE VAVFG +G  +L NP F  +W      +    HI  I   C   +
Sbjct: 470 LIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFVRMWNLSAEAMQSQPHIEAIETWCRPLF 529

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           ++   W      IT  DD R  L   LE    SVL    +PLP+  TMLTF ++TD+   
Sbjct: 530 DDDVFWQALRGAITGIDDRRHVLLK-LERKDGSVLACKTMPLPDGATMLTFQDLTDTENV 588

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERAL E+NEAL  AD IK  FV HVSYELRSPLT IIGF   L  S  G L  KQ++YV 
Sbjct: 589 ERALRERNEALETADRIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTDKQAEYVN 648

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           YI+ S+  L+ ++N+ILDLA++DAG M LN   I +   ++   + I  ++  + I ++V
Sbjct: 649 YITTSTNALMAIINNILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQV 708

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D ++  FV D +R++Q+   +L+NA+DFS    TV L   R      F+V + G  I 
Sbjct: 709 DVDPEIDRFVGDERRVVQVLYNLLANAVDFSPPQGTVRLTVRRGETRVAFTVADAGPGIA 768

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 +F+ F S+    + RG GLGLS+V SF+ LHGG V + S+    T++ C  P +
Sbjct: 769 PAFKDRMFDLFESDPQGSRHRGAGLGLSLVRSFVELHGGKVEVESTVGRGTSVTCEFPLE 828

Query: 792 E 792
           +
Sbjct: 829 Q 829


>gi|306842790|ref|ZP_07475431.1| histidine kinase [Brucella sp. BO2]
 gi|306287063|gb|EFM58571.1| histidine kinase [Brucella sp. BO2]
          Length = 850

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 44  LFAASPAFAQGMDGARIAMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 103

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 104 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 163

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 164 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 223

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y    +       
Sbjct: 224 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAHAVDMANAS-- 281

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + IGE R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 282 QVIGEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 341

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 342 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 401

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 402 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 461

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 462 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 521

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 522 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 580

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 581 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 640

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 641 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 700

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 701 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 760

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 761 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 813

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 814 FVELHGGRVEIDTGEERGTTVICRFPSE 841


>gi|23502947|ref|NP_699074.1| sensory box histidine kinase [Brucella suis 1330]
 gi|161620011|ref|YP_001593898.1| histidine kinase [Brucella canis ATCC 23365]
 gi|225853527|ref|YP_002733760.1| histidine kinase [Brucella melitensis ATCC 23457]
 gi|254700729|ref|ZP_05162557.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|254705101|ref|ZP_05166929.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|254707383|ref|ZP_05169211.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|254709075|ref|ZP_05170886.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|256030600|ref|ZP_05444214.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|256045702|ref|ZP_05448580.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112422|ref|ZP_05453343.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|256158596|ref|ZP_05456486.1| histidine kinase [Brucella ceti M490/95/1]
 gi|256254007|ref|ZP_05459543.1| histidine kinase [Brucella ceti B1/94]
 gi|256262989|ref|ZP_05465521.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|256370497|ref|YP_003108008.1| sensory box histidine kinase, putative [Brucella microti CCM 4915]
 gi|260169506|ref|ZP_05756317.1| sensory box histidine kinase, putative [Brucella sp. F5/99]
 gi|260563004|ref|ZP_05833490.1| histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260567429|ref|ZP_05837899.1| histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261759034|ref|ZP_06002743.1| histidine kinase [Brucella sp. F5/99]
 gi|23348982|gb|AAN30989.1| sensory box histidine kinase, putative [Brucella suis 1330]
 gi|161336822|gb|ABX63127.1| histidine kinase [Brucella canis ATCC 23365]
 gi|225641892|gb|ACO01806.1| histidine kinase [Brucella melitensis ATCC 23457]
 gi|256000660|gb|ACU49059.1| sensory box histidine kinase, putative [Brucella microti CCM 4915]
 gi|260153020|gb|EEW88112.1| histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260156947|gb|EEW92027.1| histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261739018|gb|EEY27014.1| histidine kinase [Brucella sp. F5/99]
 gi|263092862|gb|EEZ17037.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9]
          Length = 859

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 53  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 112

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 113 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 172

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 173 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 232

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 233 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 290

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 291 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 350

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 351 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 410

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 411 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 470

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 471 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 530

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 531 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 589

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 590 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 649

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 650 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 709

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 710 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 769

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 770 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 822

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 823 FVELHGGRVEIDTGEERGTTVICRFPSE 850


>gi|148251707|ref|YP_001236292.1| putative sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146403880|gb|ABQ32386.1| Putative sensor histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 835

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 423/791 (53%), Gaps = 14/791 (1%)

Query: 10  IGKGIE---ICTLFSC---KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLS 63
            G G+    + TLF      +A    +  +L  +++  + L+R R + A+K     + ++
Sbjct: 39  AGNGVPADAVTTLFELSRQDVAEVTAMLALLGFSVVAAVALVRTRLAAARKEARLRADVA 98

Query: 64  EICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH 123
            +  Q  +Y +LL     + I W      P+I G     +   Q    +L+F +WL    
Sbjct: 99  ALQLQADRYRALLFAEPQILIAWPAGGHRPQISGDTAMLVPQDQ-PQRILAFGSWLPPEP 157

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
            ++L +A + LR+ G+ F L   + +  AI+  GR  G  A +RI  L G+  ELAET L
Sbjct: 158 ALQLDRAVDALREAGEGFLLHLTSSHGHAIEAMGRAIGGQAIVRIRELSGLRRELAETQL 217

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           + K L       + L  +L + VW R   G + + N         +      AI  + +L
Sbjct: 218 RFKALGEETESLRALAAALPWPVWARQANGALTYVNP--AYARAADARDVPDAISRNLEL 275

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
                +  +  +      F   +  +  G  + + +     S G AG+AID S+   +  
Sbjct: 276 LDSADRTDLQRALGAAGRFEGRLPIVTGGERRMHDVHAFTLSNGSAGVAIDASEAAALRT 335

Query: 304 QLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            L    E     L  L+  +A+FD  R L F+N S+  LW++D AFL + P +  +L+ L
Sbjct: 336 ALVRMAEAHRRTLDQLSSGVAVFDGQRRLSFYNDSYRRLWDLDSAFLDSQPDDSSVLDRL 395

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R+A KLPEQ +++ WK  +   Y++ E  KDTW LP+G+ L V+ T NP GG  ++F+++
Sbjct: 396 RAARKLPEQADFRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNPEGGVTYLFDDV 455

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T    L  +++ L++VQ ET+D L+EGVAVFG +GR++L NPAF  +W+   ++L    H
Sbjct: 456 TESFALARRFDGLIRVQRETLDSLAEGVAVFGSNGRVELFNPAFAKMWRLSPDQLREHPH 515

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           I  + + C   Y+++  W      ITS ++ R  +   LE    SVL+    PLP+  TM
Sbjct: 516 IDTVESWCRSLYDDAVAWRTIREAITSIEN-RLDIALKLERKDGSVLDCMSRPLPDGATM 574

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LTF ++TD+   ERAL E NEAL  A ++K  FV HVSYELR+PLT IIGF   L     
Sbjct: 575 LTFQDITDTENVERALRESNEALEAAGQMKIDFVHHVSYELRAPLTTIIGFAHFLSDPST 634

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L  KQ++Y++Y++ S+  LL L N+ILDLAT+DAG MKL    +     +    + + 
Sbjct: 635 GPLTPKQAEYLDYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDAAKAIEAAAEGVQ 694

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            ++  + IR+KV  D  +G+FV D +R++Q+   +L+NA+ FS + STV++ A R +   
Sbjct: 695 DRLATDRIRLKVQVDPNVGTFVGDERRVVQVLYNLLANAVGFSPQDSTVLVSARRTDHSV 754

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            FSV ++G  IP D+   +F+ FVS +   + RG GLGLS+V SF+ LHGG V + S   
Sbjct: 755 AFSVTDSGPGIPPDLKDQMFDWFVSRSQGSRHRGAGLGLSLVRSFVELHGGKVRMDSVVG 814

Query: 780 GVTTINCRIPS 790
             TT+ C  P+
Sbjct: 815 KGTTVTCDFPT 825


>gi|239833142|ref|ZP_04681471.1| histidine kinase [Ochrobactrum intermedium LMG 3301]
 gi|239825409|gb|EEQ96977.1| histidine kinase [Ochrobactrum intermedium LMG 3301]
          Length = 882

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/799 (37%), Positives = 463/799 (57%), Gaps = 21/799 (2%)

Query: 4   GMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLS 63
           G  +  I       ++ + ++  F    G++   ++    LIR+R+ +A +  E  S  +
Sbjct: 85  GAESTRIALPFGGGSVGAFEVIQFSMFLGVMGAALLSAGWLIRERSRVAAENKELRSKFA 144

Query: 64  EICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH 123
           ++     +  +LL   +   +VWDG     E++G L      PQ  +  L+F  WL+   
Sbjct: 145 DLNLVAQRNEALLNLKDQRIVVWDGHSTRAEVVGLLPDESAAPQDRSAFLAFGRWLRPQS 204

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
            + L +A   LR++ +SFDL  ET N   + + GR SG  A  R LSL G+ +E A    
Sbjct: 205 VVALERAIGLLREQARSFDLTVETVNGTLLDVRGRTSGGFAVARFLSLQGVQAERAALQA 264

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           + ++ S  I +F+ L D +D  VW RD  G + W N +Y +  +       + I E R+L
Sbjct: 265 QNREFSERIELFRRLLDRIDQPVWARDAGGRVEWVNAAYAQAVDMADAS--QVISEGREL 322

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
           F  + ++R+      E    E +S + HG+ + + +  V    G  G+ +D+++   V +
Sbjct: 323 FGAQARQRLERDRFAEPVLQEQLSAVVHGDRRLFNVTDVSAETGSIGLGVDLTEVQAVRE 382

Query: 304 QLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           +L        E L  L+ A+AIFD    LQF N++F +LW +D A+L + PSN  +L+ L
Sbjct: 383 ELNRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFAKLWSLDTAWLESQPSNTLILDRL 442

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           RS  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+
Sbjct: 443 RSEGKLPEQPEWRKWKDSVLSAYRAVEPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENM 502

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T + +LE +YNTL+KVQGET+DHL+E VAVFG DGRI+LSNP+F  LW      +  GTH
Sbjct: 503 TEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTH 562

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           I +IA  CS        WD F + +T F D+R    G +EL   ++L ++++PLP  QTM
Sbjct: 563 ISSIAKICSERGGNG-LWDDFVSTVTGFLDKRDGRMGQVELDDGTILSFAVVPLPKGQTM 621

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   
Sbjct: 622 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 681

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     + 
Sbjct: 682 GSLNERQIEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAAARVG 741

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +M +++I + +     +  F AD  R+ Q+   +LSNA +++ +GS++ L+ AR+  + 
Sbjct: 742 ERMRDHDIGLDIDIADDVDVFKADANRVRQVLFNLLSNATNYAPEGSSIRLQVAREGSEI 801

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +F+V ++G  +P ++  +VF RF S                      IV+SF+ LHGG V
Sbjct: 802 VFAVHDDGPGMPGEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGSV 854

Query: 773 SISSSDEGVTTINCRIPSK 791
            I +     TT+ CR PS+
Sbjct: 855 DIDTGSGRGTTVICRFPSE 873


>gi|260755773|ref|ZP_05868121.1| histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|260758996|ref|ZP_05871344.1| histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260884797|ref|ZP_05896411.1| histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260669314|gb|EEX56254.1| histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260675881|gb|EEX62702.1| histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|260874325|gb|EEX81394.1| histidine kinase [Brucella abortus bv. 9 str. C68]
          Length = 843

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 37  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGGMGAALLSAGWLIRDRSKIANE 96

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 97  NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 156

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 157 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 216

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 217 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 274

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 275 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 334

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 335 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 394

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 395 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 454

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 455 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 514

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 515 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 573

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 574 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 633

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 634 TELLQTPAFGSLNERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 693

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 694 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 753

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 754 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 806

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 807 FVELHGGRVEIDTGEERGTTVICRFPSE 834


>gi|192288515|ref|YP_001989120.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192282264|gb|ACE98644.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 837

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/780 (32%), Positives = 403/780 (51%), Gaps = 10/780 (1%)

Query: 19  LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE 78
           L   ++         L  +++  I+L+R R     +     + L  +  +  ++ +LL  
Sbjct: 52  LNRHEMMTLIIALAALGFSVMSAIMLVRTRQRAVAREAGLRADLQGLQAESDRFQALLFA 111

Query: 79  NNCLTIVWDGKDETPEIIGQLHQRIDI---PQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
              + I W   D  P++ G     + +    +    +L+F  WL     +++  A + L 
Sbjct: 112 EPQVLISWAAGDSRPQVSGDTALFLPLETQSRQPQRVLAFGTWLPPEPALQMDHAVDALL 171

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
            +G+ F L   T N  +I+  GR  G  A +RI  L G+  ELA+ T + K L     + 
Sbjct: 172 DKGEGFLLQLVTSNGRSIEAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEML 231

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           +    +  + +W R   G + +AN +Y +   T+      AIG + +L     +  +  +
Sbjct: 232 RGFATAAPWPIWTRRSDGTLSFANAAYARA--TDASDAADAIGRNLELLDSGDRAALARA 289

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEI 311
                 +   +  +  G  + Y +  +  S G AGIA+D ++   +   L          
Sbjct: 290 LGDGYEYSGRLPIVVGGERRYYDVRALKVSGGSAGIAVDATETAALGAALERMADAHRRT 349

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L  L+  +A+FD  R L F+N S+ +LW++D  FL ++P +  +L+ LR+  KLPE+ ++
Sbjct: 350 LDQLSSGVAVFDAQRRLSFYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDF 409

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           K WK  +   Y++ E  KD W+LP+G+ + ++ T NP GG  ++F+++T  +DL+ +Y  
Sbjct: 410 KAWKNKLHEAYRAVEAEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGG 469

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L+ VQ ET+D+LSE VAVFG +G  +L NP F  +W      L    HI  I   C   +
Sbjct: 470 LIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLF 529

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           ++   W      IT  DD R  L   +E    SVL    +PLP+  TMLTF ++TD+   
Sbjct: 530 DDDVFWQALRGAITGIDDRRHVLLK-IERKDGSVLACKTMPLPDGATMLTFQDITDTENV 588

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERAL E+NEAL  AD IK  FV HVSYELRSPLT IIGF   L  S  G L  KQ++YV 
Sbjct: 589 ERALRERNEALETADRIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTEKQAEYVN 648

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           YI+ S+  L+ ++N+ILDLA++DAG M LN   I +   ++   + I  ++  + I +++
Sbjct: 649 YITTSTNALMAIINNILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQI 708

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D  + SFV D +R++Q+   +L+NA+DFS    TV L   R      F+V ++G  I 
Sbjct: 709 DVDPAIESFVGDERRVVQVLYNLLANAIDFSPSQGTVRLTVRRGETRVAFTVTDSGPGIA 768

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               + +F+ F S+    + RG GLGLS+V SF+ LHGG V + S+    T++ C  P +
Sbjct: 769 PAFKEKMFDLFESDPQGSRHRGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFPIE 828


>gi|254713498|ref|ZP_05175309.1| histidine kinase [Brucella ceti M644/93/1]
 gi|254716146|ref|ZP_05177957.1| histidine kinase [Brucella ceti M13/05/1]
          Length = 859

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 53  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 112

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 113 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 172

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 173 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 232

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 233 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 290

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 291 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 350

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 351 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 410

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 411 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 470

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAV+G DGR++LSNP+F +LW   
Sbjct: 471 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVYGSDGRLRLSNPSFAALWSLP 530

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 531 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 589

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 590 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 649

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 650 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 709

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 710 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 769

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 770 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 822

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 823 FVELHGGRVEIDTGEERGTTVICRFPSE 850


>gi|261221148|ref|ZP_05935429.1| histidine kinase [Brucella ceti B1/94]
 gi|261314866|ref|ZP_05954063.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261316576|ref|ZP_05955773.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|261751241|ref|ZP_05994950.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261755806|ref|ZP_05999515.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|265987648|ref|ZP_06100205.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|265992123|ref|ZP_06104680.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993860|ref|ZP_06106417.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|265997108|ref|ZP_06109665.1| histidine kinase [Brucella ceti M490/95/1]
 gi|260919732|gb|EEX86385.1| histidine kinase [Brucella ceti B1/94]
 gi|261295799|gb|EEX99295.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|261303892|gb|EEY07389.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261740994|gb|EEY28920.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261745559|gb|EEY33485.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|262551576|gb|EEZ07566.1| histidine kinase [Brucella ceti M490/95/1]
 gi|262764841|gb|EEZ10762.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|263003189|gb|EEZ15482.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264659845|gb|EEZ30106.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|326410096|gb|ADZ67161.1| histidine kinase [Brucella melitensis M28]
          Length = 843

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 37  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 96

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 97  NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 156

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 157 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 216

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 217 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 274

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 275 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 334

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 335 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 394

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 395 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 454

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 455 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 514

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 515 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 573

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 574 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 633

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 634 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 693

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 694 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 753

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 754 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 806

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 807 FVELHGGRVEIDTGEERGTTVICRFPSE 834


>gi|261217919|ref|ZP_05932200.1| histidine kinase [Brucella ceti M13/05/1]
 gi|261321231|ref|ZP_05960428.1| histidine kinase [Brucella ceti M644/93/1]
 gi|260923008|gb|EEX89576.1| histidine kinase [Brucella ceti M13/05/1]
 gi|261293921|gb|EEX97417.1| histidine kinase [Brucella ceti M644/93/1]
          Length = 843

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 37  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 96

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 97  NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 156

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 157 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 216

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 217 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 274

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 275 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 334

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 335 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 394

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 395 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 454

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAV+G DGR++LSNP+F +LW   
Sbjct: 455 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVYGSDGRLRLSNPSFAALWSLP 514

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 515 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 573

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 574 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 633

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 634 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 693

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 694 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 753

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 754 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 806

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 807 FVELHGGRVEIDTGEERGTTVICRFPSE 834


>gi|256060062|ref|ZP_05450244.1| histidine kinase [Brucella neotomae 5K33]
          Length = 859

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 467/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 53  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 112

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 113 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 172

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 173 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 232

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y    +       
Sbjct: 233 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYALAVDMANAS-- 290

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 291 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 350

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 351 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 410

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 411 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 470

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 471 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 530

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 531 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 589

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 590 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 649

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 650 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 709

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 710 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 769

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 770 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 822

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 823 FVELHGGRVEIDTGEERGTTVICRFPSE 850


>gi|163844116|ref|YP_001628520.1| histidine kinase [Brucella suis ATCC 23445]
 gi|163674839|gb|ABY38950.1| histidine kinase [Brucella suis ATCC 23445]
          Length = 859

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 467/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 53  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 112

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 113 NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 172

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 173 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 232

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 233 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 290

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 291 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 350

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 351 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 410

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y + E  +  WHLP+ +T+ V+   +P+G
Sbjct: 411 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYCAVEPEEHMWHLPDTRTMRVVANPHPQG 470

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 471 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 530

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 531 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 589

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 590 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 649

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 650 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 709

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 710 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 769

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 770 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 822

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 823 FVELHGGRVEIDTGEERGTTVICRFPSE 850


>gi|326539813|gb|ADZ88028.1| histidine kinase [Brucella melitensis M5-90]
          Length = 821

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 468/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 15  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 74

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 75  NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 134

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 135 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 194

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 195 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 252

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 253 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 312

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 313 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 372

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 373 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 432

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 433 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 492

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 493 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 551

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 552 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 611

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 612 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 671

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 672 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 731

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 732 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 784

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 785 FVELHGGRVEIDTGEERGTTVICRFPSE 812


>gi|90421906|ref|YP_530276.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90103920|gb|ABD85957.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 843

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/781 (32%), Positives = 412/781 (52%), Gaps = 14/781 (1%)

Query: 23  KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL 82
            I        +L  +++  ILL+R R   A         +  +  +  ++ +LL   + +
Sbjct: 58  DIIALTMAVAVLGFSVVAAILLMRTRLRAAACETRLRGNIQTLQVEADRFRALLFAESQV 117

Query: 83  TIVWDGKDETPEIIGQLHQ-------RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
            I W   D  P+I G +           D       +L+F  W+     +K+  A + L 
Sbjct: 118 LIAWAAGDSRPQISGDVSLLIPQAGLAADQSVQSQRILAFGTWMPPEPALKMDHAVDALL 177

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
           + G+ F L   T    +I+  GR  G  A +R+  L G+  ELAE T + K L     + 
Sbjct: 178 ESGEGFQLNLVTSTGRSIEAVGRAVGGQAIVRMRELSGLRRELAEMTQRHKTLQEETEML 237

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           +    +  + +W R  AG++ +AN +Y + TE   +   +AI  + +L +   +  +  +
Sbjct: 238 RDFAAAAPWPIWTRRDAGELNFANAAYARATEAGSV--AEAIERNLELLESNDRTALSRA 295

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----I 311
                NF   +  +  G  + Y +  +    G AG AID S+   +   L    E     
Sbjct: 296 LNDNANFSARLPIVVRGERRIYDVHAMKVRGGSAGAAIDASEAYALGAALVRMAEAHRRT 355

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L  L+  +A+FD+   L F+N S+  LW++D AFL +NP +  +L+ LR+A KLPEQ N+
Sbjct: 356 LDQLSSGVAVFDEQHRLAFYNDSYRRLWDLDRAFLDSNPDDSSVLDRLRAARKLPEQPNF 415

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           + WK  +   Y++ +  KD W+LP+G+ + ++ T NP GG  ++F+++T  ++L  +++ 
Sbjct: 416 REWKMRLHEAYRAVDPAKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLELARRFDG 475

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L+ VQ ET+D+L+E VAVFG +G  +L NP F  +W      L    HI  +   C   +
Sbjct: 476 LINVQRETLDNLAEAVAVFGSNGCARLFNPPFARMWNLSPEALQLQPHIETVVDWCRPLF 535

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           ++   W      IT  ++ R ++   LE    SVL    +PLP+  TMLTF ++TD+   
Sbjct: 536 DDPAIWQTLRGAITGIEN-RIAIPLKLERRDGSVLNCMTMPLPDGATMLTFQDITDTENV 594

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERAL E+NEAL  AD++K  FV HVSYELRSPLT IIGF   L     G L  KQ +Y+ 
Sbjct: 595 ERALRERNEALETADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPSTGPLTEKQEEYLS 654

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           YI+ S+  LL ++N+ILDLAT+DAG M LN   + +   + +  + I  ++  ++I ++V
Sbjct: 655 YITTSTNALLAIINNILDLATIDAGAMTLNLGQVDIRKAIADAIEGIQDRLARDHIVLEV 714

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            +   +G F+AD +R++Q+   +L+NA+ FS + + + L A R     +F+V + G  IP
Sbjct: 715 NAAPDVGHFIADERRVVQVLYNLLANAVGFSPQHAAITLSAKRTEQTVVFTVTDTGPGIP 774

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            D+ + VF+ F S ++  + RG GLGLS+V SF+ LHGG+V I S     TT+ C  P  
Sbjct: 775 PDVKEKVFDWFESRSNGSRHRGAGLGLSLVRSFVELHGGNVRIDSVVGKGTTLTCSFPID 834

Query: 792 E 792
           +
Sbjct: 835 Q 835


>gi|115522493|ref|YP_779404.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
 gi|115516440|gb|ABJ04424.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
          Length = 843

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/795 (32%), Positives = 419/795 (52%), Gaps = 14/795 (1%)

Query: 9   GIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQ 68
             G    +      +       AG+L  +++  ILL+R R   A         +  +  +
Sbjct: 44  SAGSVAGLLDFNRQEWIALSLAAGVLGFSVLATILLMRTRLRAAANEARLRGEVQTLQAE 103

Query: 69  LSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID---IPQTD----TDLLSFENWLKF 121
             ++ +LL     + I W   D  P+I G +   I    +PQ        +L+F  W+  
Sbjct: 104 ADRFRALLFAEPQVLISWAAGDSHPQISGDISLLIPPAMLPQDPTLQPQRVLAFGTWMPP 163

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
              +++  A + L + G+ F L   T    +I+  GR  G  A +RI  L G+  ELAET
Sbjct: 164 EPALRMDHAVDALLESGEGFLLHLVTAGGRSIEAMGRAVGGQAIVRIRELSGLRRELAET 223

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
           T + K L     + +    +  + +W R   G + +AN +Y + +E   I    A+ +S 
Sbjct: 224 TQRYKSLQEETEMLRDFVFAAPWPIWTRRADGALTFANAAYARASEAASIT--DAVTQSV 281

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
           +L     +  +  + A   +F   +  +  G  + + +       G AGIAID ++   +
Sbjct: 282 ELLDSSDRAAVARALADGTSFNARLPIVVGGERRIFDVYAQKVRGGSAGIAIDANEAAAL 341

Query: 302 N----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
                         L  L+  +A+FD  + L F+N S+  LW++D  FL +NP +  +L+
Sbjct: 342 AAALVRMADAHRRTLDQLSSGVAVFDAQQRLAFYNDSYRRLWDLDRVFLDSNPDDSSVLD 401

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            LR+A KLPEQ +++ WK  +   Y++ +  KD W+LP+G+TL ++ T NP GG  ++F+
Sbjct: 402 RLRAARKLPEQPDFRAWKTRLHEAYRAVDAVKDVWYLPDGRTLSMVTTPNPEGGVTYLFD 461

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T   DL  +Y  L+ VQ ET+D+L+E VAVFG +G  +L NP F  LW      L   
Sbjct: 462 DVTESFDLARRYGALINVQRETLDNLTEAVAVFGSNGCAQLFNPPFARLWNLSPEALQLQ 521

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            HI  +   C   +++   W    + IT  ++ R ++   L+    SVL  + +PLP+  
Sbjct: 522 PHIETVIGWCRPLFDDDAIWQTLRSAITGIEN-RVAVPLKLQRSDGSVLACTTMPLPDGA 580

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TMLTF + TD+   ERAL E+NEAL  AD++K  FV HVSYELRSPLT IIGF   L  +
Sbjct: 581 TMLTFQDNTDTENVERALRERNEALETADQMKVKFVHHVSYELRSPLTTIIGFAHFLADA 640

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G L  KQ++Y+ YI+ S+  LL ++N+ILDLAT+DAG M LN   + +   ++   + 
Sbjct: 641 STGPLTEKQAEYLSYITTSTNALLAIINNILDLATIDAGAMALNLGPVDIRKAIDAAVEG 700

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I  ++  ++IR+++  D ++G F+AD +R++Q+   +L+NA+ FS +   + LKAAR   
Sbjct: 701 IQDRLARDHIRLEIEVDPEIGRFLADERRVVQVLYNLLANAVGFSPEHGAITLKAARSEK 760

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + +F+V + G  IP ++   VF+ F S++   + RG GLGLS+V SF+ LHGG V ++S 
Sbjct: 761 EVVFTVIDKGPGIPPEVKDKVFDWFESHSKGSRHRGAGLGLSLVRSFVELHGGKVEVNSV 820

Query: 778 DEGVTTINCRIPSKE 792
               TT+ C  P  +
Sbjct: 821 LGQGTTLTCSFPIDQ 835


>gi|148560078|ref|YP_001259900.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|148371335|gb|ABQ61314.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840]
          Length = 837

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/808 (37%), Positives = 467/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 31  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 90

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 91  NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 150

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 151 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 210

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y +  +       
Sbjct: 211 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYAQAVDMANAS-- 268

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 269 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 328

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 329 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 388

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 389 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 448

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 449 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 508

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 509 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 567

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 568 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 627

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 628 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 687

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 688 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 747

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 748 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 800

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ C  PS+
Sbjct: 801 FVELHGGRVEIDTGEERGTTVICHFPSE 828


>gi|261324039|ref|ZP_05963236.1| histidine kinase [Brucella neotomae 5K33]
 gi|261300019|gb|EEY03516.1| histidine kinase [Brucella neotomae 5K33]
          Length = 843

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/808 (37%), Positives = 467/808 (57%), Gaps = 27/808 (3%)

Query: 1   MMAGMATIGIG-KGIEICTLFSC-----KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK 54
           + A       G  G  I   F       ++  F    G +   ++    LIR R+ +A +
Sbjct: 37  LFAASPAFAQGMDGARISMPFGGSVGAFEVIQFSIFLGAMGAALLSAGWLIRDRSKIANE 96

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS 114
            NE  S  +++     +  +LL   +   +VWDG +   +++GQL      PQ     L+
Sbjct: 97  NNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRADVVGQLPDACGAPQDRPAFLA 156

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
           F  WL+      L +A   LR++ ++FDL  ET N   + + GR SG  A     SL G+
Sbjct: 157 FGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLLDVHGRTSGGFAVACFQSLQGV 216

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +E A    + ++L++ I + + L D ++   W RD  G I W N++Y    +       
Sbjct: 217 QAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNGRIEWVNLAYALAVDMANAS-- 274

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G+  D
Sbjct: 275 QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLGFD 334

Query: 295 VSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L T P
Sbjct: 335 LTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWLETRP 394

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           SN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+G
Sbjct: 395 SNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANPHPQG 454

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +LW   
Sbjct: 455 GVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLP 514

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L +++
Sbjct: 515 SEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAILSFAV 573

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGF
Sbjct: 574 VPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGF 633

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + 
Sbjct: 634 TELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEA 693

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS ++L
Sbjct: 694 ISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVL 753

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVES 763
           + ARD  D +F+V ++G  +P ++  +VF RF S                      IV+S
Sbjct: 754 QVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKS 806

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ LHGG V I + +E  TT+ CR PS+
Sbjct: 807 FVELHGGRVEIDTGEERGTTVICRFPSE 834


>gi|146337252|ref|YP_001202300.1| putative sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146190058|emb|CAL74050.1| Putative sensor histidine kinase [Bradyrhizobium sp. ORS278]
          Length = 835

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/799 (34%), Positives = 423/799 (52%), Gaps = 14/799 (1%)

Query: 2   MAGMATIGIGKGIEICTLFS------CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKV 55
           +A  +    G G+    + S        +A    +  +L  +++  I L+R R + A+K 
Sbjct: 31  LAPASQGFAGDGVPADAISSLFELSRSDVAEVTAMLALLGFSVVAAIALVRTRLAAARKE 90

Query: 56  NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
               + ++E+  Q  +Y +LL     + I W      P+I G     +   Q    +L+F
Sbjct: 91  ARLRADVAELQLQADRYRALLFAEPQILIAWPAGGHRPQISGDTSMLVPSDQ-PQRILAF 149

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
            +WL     ++L  A E LR+ G+ F L   T +  AI+  GR  G  A +RI  L G+ 
Sbjct: 150 GSWLPPEPALQLDHAVEALREAGEGFMLHLTTSHGHAIEAMGRAIGGQAIVRIRELSGLR 209

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ELAET L+ K L       + L  +L + +W R   G + + N         +      
Sbjct: 210 RELAETQLRFKALGEETESLRALASALPWPIWARHANGALAYVNA--AYARAADARDIPD 267

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
           AI  + +L     +  +  +     +F   +  +  G  + + +       G AG+AID 
Sbjct: 268 AISRNLELLDSADRSDLQRALGAGGHFEGRLPIVMGGERRMHDVRAFTLGGGSAGVAIDA 327

Query: 296 SKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           S+   + D L   +E     L  L+  +A+FD  R L F+N S+  LW++D AFL + P 
Sbjct: 328 SEAAALTDALVRMHEAHRRTLDQLSSGVAVFDGQRRLAFYNDSYRRLWDLDTAFLDSQPD 387

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
           +  +L+ LR++ KLPEQ +++ WK  +   Y++ E  KDTW LP+G+ L V+ T NP GG
Sbjct: 388 DSSVLDRLRASRKLPEQADFRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNPEGG 447

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             ++F+++T    L  +Y+ L++VQ ET+D L+EGVAVFG +GR++L NPAF  +W+   
Sbjct: 448 VTYLFDDVTESFALARRYDGLIRVQRETLDSLAEGVAVFGSNGRVELFNPAFAKMWRLSP 507

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           + L    HI  + + C   Y++S  W      ITS ++ R  +   LE    SVL+    
Sbjct: 508 DSLREHPHIDTVESWCRSIYDDSVAWRTIREAITSIEN-RLDVALKLERKDGSVLDCMSR 566

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           PLP+  TMLTF ++TD+   ERAL E NEAL  A ++K  FV HVSYELR+PLT IIGF 
Sbjct: 567 PLPDGATMLTFQDITDTENVERALRESNEALEAAGQMKIDFVHHVSYELRAPLTTIIGFA 626

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             L     G L  KQ++Y++Y++ S+  LL L N+ILDLAT+DAG MKL    +     +
Sbjct: 627 HFLSDPSTGPLTPKQAEYLDYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDAAKAI 686

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
               + +  ++  + IR++V     +GSFV D +R++Q+   +L+NA+ FS + STVI+ 
Sbjct: 687 EAAAEGVQDRLATDRIRLRVEVAPDVGSFVGDERRVVQVLYNLLANAVGFSPQDSTVIVS 746

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           A R +    F+V + G  IP D+   +F+ FVS +   + RG GLGLS+V SF+ LHGG 
Sbjct: 747 ARRTDHSVAFAVTDCGPGIPADIKDQMFDWFVSRSQGSRHRGAGLGLSLVRSFVELHGGK 806

Query: 772 VSISSSDEGVTTINCRIPS 790
           V + S     TT+ C  P+
Sbjct: 807 VRMDSVVGKGTTVTCDFPT 825


>gi|209883640|ref|YP_002287497.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha
           carboxidovorans OM5]
 gi|209871836|gb|ACI91632.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha
           carboxidovorans OM5]
          Length = 816

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/785 (34%), Positives = 421/785 (53%), Gaps = 9/785 (1%)

Query: 14  IEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYH 73
           + +  L   ++        +   +++  I L+R R S A    + ++    +  +  +  
Sbjct: 27  MILSGLQRPEMPALALFVAVTCFSVVATIALLRTRLSAAATEAKLHADNQALQSETDRLR 86

Query: 74  SLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQ--TDTDLLSFENWLKFHHYIKLSKAT 131
           +LL     + I W   DE P+I G     +   Q      +L+F  WL     + +  A 
Sbjct: 87  ALLFAEPQVLIAWSAGDERPDITGDTALLMPQGQTAPAQRILAFGTWLHPEQALAMDHAV 146

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
           + LR+ G+SF L   T N  AI+  GR  G  A +RI  L G+  ELAETT + + L   
Sbjct: 147 DGLRERGESFLLTMATSNGRAIEAMGRAVGGQAIVRIRELSGVRLELAETTQRHRDLLEE 206

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
               +    ++   +W     G + +AN         E      AI  S +L   E +  
Sbjct: 207 TDALRAFAAAIPLPLWALRTDGTLRYANA--AYAQAAEAENPADAIARSVELLDSEDRTA 264

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH---- 307
           M  + A  K +   +     G  +++ +       G  G+A+D S+ +   D LTH    
Sbjct: 265 MRDALADGKAYRARLPVAIGGERRTFDVFAFNIGDGSVGMAVDASETVAFKDALTHMASA 324

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +L  L+  +A+FD +R L F+N S+  LW++D AFL ++P +  +LE LR+  K+PE
Sbjct: 325 HRRMLDQLSSGVAVFDADRRLAFYNDSYRRLWDLDSAFLDSSPDDSSVLEKLRAMRKIPE 384

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           Q +++ WK  +   Y++ E  KDTW+LP+G+ + ++ T NP GG  ++F+++T  + L+ 
Sbjct: 385 QPDFRAWKAKLHEAYRAVEPAKDTWYLPDGRAISIVTTPNPEGGVTYLFDDVTEGLKLQR 444

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +++ L++VQ ET+D+L+E VAVFG +GR +L NP F  +WK     L    HI  I   C
Sbjct: 445 QHDGLLRVQRETLDNLAEAVAVFGGNGRARLFNPPFARMWKLSPEALEQQPHIETIEQWC 504

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
              + E+  W    A IT  D+ R+ LQ  LE    SVL+ + +PLP+  TMLTF +VTD
Sbjct: 505 RPLFEEAATWQAMRAAITGIDN-REPLQLRLERKDGSVLDCTTMPLPDGATMLTFQDVTD 563

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +V  ERAL E+N+AL  AD++K  FV HVSYELRSPLT IIGF   L     G +  KQS
Sbjct: 564 TVNVERALRERNDALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPATGPMTVKQS 623

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+ YI+ S+  LL ++N+ILDLAT++AG M L+   + L   + E    +  ++  +NI
Sbjct: 624 EYLGYITTSTNALLAIINNILDLATINAGAMTLDLGPVDLRKTVEEATAGLQDRLVHDNI 683

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R+ V  D  +  FVAD +R++QIF  +L+NA+ FS    T+   A R+NG    +V + G
Sbjct: 684 RLAVEIDPSVTGFVADERRMVQIFYNLLANAIGFSPPNGTIRFSAWRENGAVCCAVSDAG 743

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IP +M   +F+ F S A+  + RG GLGLS+V SF+ LHGG V + S+ +  TT+ C 
Sbjct: 744 PGIPPEMRDRMFDWFESRANGSRHRGAGLGLSLVRSFVELHGGTVRVDSAVDQGTTVTCE 803

Query: 788 IPSKE 792
            P+ +
Sbjct: 804 FPADQ 808


>gi|91974689|ref|YP_567348.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
 gi|91681145|gb|ABE37447.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
          Length = 837

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/777 (32%), Positives = 417/777 (53%), Gaps = 10/777 (1%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++      A +L  +++  ILL+R R   A +  +  + +  +  +  ++ +LL     
Sbjct: 55  HELVTLAMAASVLGFSVVSAILLMRTRQRAAAQEAQLRADVQTLQAESDRFRALLFAEPQ 114

Query: 82  LTIVWDGKDETPEIIGQLHQRID---IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG 138
           + I W   D+ P+I G     +           +L+F  WL     +++  A + L  +G
Sbjct: 115 VLISWSAGDDRPQISGDTALLLPQEVANAQPQRVLAFGTWLPPEPALQMDHAVDALLDKG 174

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           ++F L   T    +I+  GR  G  A LRI  L GI  ELA+ + + K L +   + +  
Sbjct: 175 EAFLLHLTTSTGRSIEAMGRAIGGQAILRIRELSGIRRELADMSRRFKSLQDESEMLRGF 234

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            ++  + +W R  +G++ +AN +Y + T+        A+  + +L     +  +  +   
Sbjct: 235 ANAAPWPIWTRRASGELSFANAAYARATDAGSA--ADAVNRNLELLDSNDRGNLARALND 292

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHN 314
              F   +  +  G  + + +  +  S G AGIA+D S+   +   L    E     L  
Sbjct: 293 NAQFAARLPIVVSGERRYFDVRALRLSGGSAGIAVDASEAAALGAALVRMAEAHRRTLDQ 352

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           L+  +A+FD  R L F+N S+  LW++D AFL +NP +  +++ LR+A KLPE+ +++ W
Sbjct: 353 LSSGVAVFDAQRRLAFYNDSYRRLWDLDRAFLDSNPDDSSVIDRLRAARKLPEERDFREW 412

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           K+ +   Y++ E  K  W+LP+G+ + ++ T N  GG  ++F+++T  ++L+ +Y  L+ 
Sbjct: 413 KKKLHEAYRAVEPEKAIWYLPDGRAISIVTTPNQEGGVTYLFDDVTESLELQRRYGGLID 472

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           VQ ET+D+L+E VAVFG +G  +L NPAF  +W      L+   HI  +   C   ++++
Sbjct: 473 VQRETLDNLTEAVAVFGSNGCAQLFNPAFTRMWNLSPEALNNRPHIETVEEWCRPLFDDA 532

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             W    + IT  DD RK +   LE    +VL    +PLP+  TMLTF++++D+   ERA
Sbjct: 533 VSWQALRSAITGIDD-RKHVLLKLERKDGTVLSCKTMPLPDGATMLTFLDISDTENVERA 591

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+NEAL  AD IK  FV HVSYELRSPLT IIGF  LL     G LN KQS+Y+ YI+
Sbjct: 592 LRERNEALETADRIKVDFVHHVSYELRSPLTTIIGFAHLLGDPSTGPLNDKQSEYIAYIT 651

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+  L+ ++N+ILDLA++DAG M LN   I +   ++   + I  ++  + I + V  D
Sbjct: 652 SSTNALMAIINNILDLASIDAGAMTLNLGPIDIGRAIDAAAEGIQDRLARDQITLDVEID 711

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +G FV D +R++Q+   +L+NA+ FS   +TV L   +     +F+V + G  I  ++
Sbjct: 712 PAVGEFVGDERRVVQVLYNLLANAVGFSPNQATVTLVVHKIGAKVVFTVTDAGPGIAPEL 771

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              VF+ F S++   + RG GLGL++V SF+ LHGG V + S     T++ C  P +
Sbjct: 772 KDKVFDWFESHSQGSRHRGPGLGLALVRSFVELHGGKVQVDSVVGRGTSVICEFPIE 828


>gi|85714154|ref|ZP_01045143.1| Histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85699280|gb|EAQ37148.1| Histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 831

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/779 (33%), Positives = 415/779 (53%), Gaps = 8/779 (1%)

Query: 19  LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE 78
           L    +       G+L  +++  ILL+R R   A       + + E+  +  ++ +LL  
Sbjct: 48  LSRQDLTALAMALGVLSFSVVAAILLMRTRIRAAANEQRLRAEIRELQSEADRFRALLFV 107

Query: 79  NNCLTIVWDGKDETPEIIGQLHQRIDIPQT-DTDLLSFENWLKFHHYIKLSKATEKLRKE 137
              + I W   ++ P+I G +   +         +L+F  WL     +++  A + LR E
Sbjct: 108 EPQILISWGAGEDRPQISGDIALLLPQDAKQPLRILAFGTWLPPEPALQMDHAVDALRNE 167

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           G+ F L   T     ++  GR  G  A +RI  L G+  +LAE TL+   L     + + 
Sbjct: 168 GEGFLLNLVTSAGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAEMTLRHNNLLAETEMLRT 227

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
              +  + +W R + G++ +AN        TE      AI  + +L   E +  M  +  
Sbjct: 228 FAGAAPWPLWARSEDGNLSYANA--AYARATEAAGAADAIQRNLELLDSEDRIAMARALD 285

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILH 313
               F   +  +  G  + Y +  +  + G AGIA+D S+ +T+   L          L 
Sbjct: 286 DHAAFSARLPIVIGGERRMYDVHALRAAGGSAGIALDASEAVTLRQTLERMADAHRRTLD 345

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            L+  +A+FD  R L F+N S+  LW++D AFL  NP +  +L+ LR+A KLPEQ +++ 
Sbjct: 346 QLSSGVAVFDGRRRLAFYNDSYRRLWDLDRAFLDGNPDDSSVLDRLRAARKLPEQPDFRA 405

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           WK  +   Y+++E  KD W+LP+G+ L ++ T NP GG  ++F+++T  +DL  +Y+ L+
Sbjct: 406 WKARLHEAYRANEAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLDLARRYDRLI 465

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            VQ ET+D L+E VAVFG +GR +L NPAF  +WK     L+   HI  + A C   +++
Sbjct: 466 TVQRETLDSLTEAVAVFGSNGRAQLFNPAFARMWKLSAEALAQQPHIDTVEAWCKPLFDD 525

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           +D W      +T  D+ R ++   LE    SVL+   +PLP+  TMLTF ++TDS   ER
Sbjct: 526 NDAWRTIHKAVTGIDN-RTAVPLKLERKDGSVLDCMTMPLPDGATMLTFHDITDSENVER 584

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E+N+AL  AD++K  FV HVSYELRSPLT IIGF  L+     G L  KQ++YV YI
Sbjct: 585 ALRERNDALETADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLTEKQAEYVNYI 644

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           ++S+  LL L N+ILDLAT+DAG M L    + +   +    + I  ++  ++I + V  
Sbjct: 645 TSSTDALLALTNNILDLATIDAGAMTLELGPVDVRKTIAAAAEGIQDRLARDHIVLNVDV 704

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +G+F+ D +R++Q+   +L+NA +FS   + + + A R      F+V + G  IP D
Sbjct: 705 DPDIGNFIGDERRIVQVLYNLLANAANFSPPNAVITVSARRTEHSVRFAVMDEGPGIPPD 764

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +   VF+ F S+A+  + RG GLGLS+V SF+ LHGG V   S+    T + C  P  +
Sbjct: 765 VKDKVFDWFESHANGSRHRGAGLGLSLVRSFVELHGGRVHFDSTITSGTRVVCDFPLDQ 823


>gi|153008157|ref|YP_001369372.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
 gi|151560045|gb|ABS13543.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
          Length = 858

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/799 (37%), Positives = 459/799 (57%), Gaps = 21/799 (2%)

Query: 4   GMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLS 63
           G  +  I       ++ + ++  F    G++   ++    LIR+R+ +A +  E  S  +
Sbjct: 61  GAESARIALPFGGGSIGAFEVIQFSMFLGVMGAALLSAGWLIRERSRVAAENKELRSKFA 120

Query: 64  EICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH 123
           ++     +  +LL   +   +VWDG     E++G L      PQ  +  L+F  WL+   
Sbjct: 121 DLNLVAQRNEALLNLKDQRIVVWDGHSTRAEVVGLLPDDSAAPQDRSTFLAFGRWLRPQS 180

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
            + L +A   LR++ +SFDL  ET N   + + GR SG  A  R LSL G+ +E A    
Sbjct: 181 VVALERAIGMLREQARSFDLTVETVNGTLLDVRGRTSGGFAVARFLSLQGVQAERAALQA 240

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           + ++ S  I +F+ L D +D  VW RD  G + W N +Y +  +       + I E R+L
Sbjct: 241 QNREFSERIELFRRLLDRIDQPVWTRDAGGRVEWVNAAYAQAVDMAD--GSQVISEGREL 298

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
           F  + ++R+      E    E ++ + HG+ + + +  V    G  G+  D ++   V +
Sbjct: 299 FGAQARQRLERDRFAEPVLQEQLTAVVHGDRRLFNVTDVSAETGSVGLGFDQTEVQAVRE 358

Query: 304 QLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           +L        E L  L+ A+AIFD    LQF N++F +LW +D A+L + PSN  +L+ L
Sbjct: 359 ELNRTMKSHAETLDQLSTAVAIFDPEMKLQFFNQAFAKLWSLDTAWLESQPSNTLILDRL 418

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           RS  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   +P+GG  W FEN+
Sbjct: 419 RSEGKLPEQPEWRKWKDSVLSAYRAVEPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENM 478

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T + +LE +YNTL+KVQGET+DHL+E VAVFG DGRI+LSNP+F  LW      +  GTH
Sbjct: 479 TEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTH 538

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           I +IA  C         WD F + +T F D R    G +EL   ++L ++++PLP  QTM
Sbjct: 539 ISSIARICGERGGNG-LWDDFVSTVTGFLDTRDGRMGQVELDDGTILSFAVVPLPKGQTM 597

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTNIIGFT+LL+T   
Sbjct: 598 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 657

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           GSLN +Q +Y+++IS SS++LL +VNDILDLATVDAGIM+L    + + + ++     + 
Sbjct: 658 GSLNERQIEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAASRVG 717

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +M +++I + +     +  F AD  R+ Q+   +LSNA +++ +GS++ L+ AR+  + 
Sbjct: 718 ERMRDHDIGLDIDIADDVDVFKADANRVRQVLFNLLSNATNYAPEGSSIQLQVAREGSEV 777

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +F+V ++G  +P ++  +VF RF S                      IV+SF+ LHGG V
Sbjct: 778 VFAVHDDGPGMPGEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGSV 830

Query: 773 SISSSDEGVTTINCRIPSK 791
            I +     TT+ CR PS+
Sbjct: 831 DIDTGSGRGTTVICRFPSE 849


>gi|299133352|ref|ZP_07026547.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298593489|gb|EFI53689.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 834

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/796 (34%), Positives = 418/796 (52%), Gaps = 10/796 (1%)

Query: 3   AGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFL 62
           AG   I     I +  L   +I      A +L  +++  ILL+R R        +  +  
Sbjct: 35  AGNGAIDTTLAI-LGNLNRPEITGLALSASVLCFSVVSAILLMRTRLRAEAMEAQLRADN 93

Query: 63  SEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQ--TDTDLLSFENWLK 120
             +  +  +  +LL     + I W   DE P+I G +   +   Q  +   +L+F  WL 
Sbjct: 94  QSLQHESDRLRALLFAEPQVLIAWSAGDERPDITGDIALLMPQGQATSAQRVLAFGTWLL 153

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
               + +  A + LR+ G+SF L     N  AI+  GR  G  A +RI  L G+  ELAE
Sbjct: 154 PEQALAMDHAVDALRERGESFLLTMSASNGRAIEAIGRAVGGQAIVRIRELSGVRLELAE 213

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
            T +   L       +     +   +W R   G + +AN         E      AI   
Sbjct: 214 MTQRHLHLIEETDALRAFAAEIPQPLWARRANGTLRYANA--AYARAAEAANPSDAIERG 271

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            +L   E +  M  + A  K +   +     G  + + +     + G  G+AID S+ + 
Sbjct: 272 VELLDSEDRAAMRHALAEGKPYRARLPVAIGGERRIFDVFAYNVTDGSVGVAIDCSETVA 331

Query: 301 VNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             D L         +L  L+  +A+FD ++ L F+N S+  LW++D AFL +NPS+  +L
Sbjct: 332 FKDALMRMADAHRRMLDQLSSGVAVFDADKRLAFYNDSYRRLWDLDRAFLDSNPSDSSVL 391

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           E LR+  K+PEQ +++ WK  +   Y++ E  K+TW+LP+G+ + ++ T NP GG  ++F
Sbjct: 392 EKLRAERKIPEQPDFRAWKARLHEAYRAIEPAKETWYLPDGRAVSIVTTPNPEGGVTYLF 451

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +++T  + L+ +++ L++VQ ET+D+LSE VAVFG +GR +L NP F  LWK     L  
Sbjct: 452 DDVTESLKLQRQHDGLLRVQRETLDNLSEAVAVFGGNGRAQLFNPPFAQLWKLSTEALQQ 511

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             HI  I   C   + ++  W    A IT  D  R +LQ  +E    SVL+ + IPLP+ 
Sbjct: 512 QPHIETIEQWCRPLFEDAATWQAIRAAITGIDS-RTALQTRIERKDGSVLDCTTIPLPDG 570

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            TML F +VTDSV  ERAL E+N+AL  AD++K  FV HVSYELRSPLT IIGF   L  
Sbjct: 571 ATMLAFQDVTDSVNVERALRERNDALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSD 630

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G +  KQS+Y+ YI+ S+  LL ++N+ILDLAT++AG M L+   + L   + E   
Sbjct: 631 PATGPMTVKQSEYLNYITTSTNALLAIINNILDLATINAGAMTLDLGPVDLRKTVEEATA 690

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  ++  +NIR+ +  D     F+AD +R++QIF  +L+NA+ FS    TV L A R+N
Sbjct: 691 GLQDRLVHDNIRLVIDIDPSAAGFIADERRIVQIFYNLLANAIGFSPTNGTVRLNAWREN 750

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G    +V + G  IP+D+   VF+ F S A+  + RG GLGLS+V SF+ LHGG V + S
Sbjct: 751 GLICCAVADAGPGIPDDVRDKVFDWFESRANGSRHRGAGLGLSLVRSFVELHGGRVRVDS 810

Query: 777 SDEGVTTINCRIPSKE 792
                TT+ C  P+ +
Sbjct: 811 VVGEGTTVTCEFPADQ 826


>gi|319780208|ref|YP_004139684.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166096|gb|ADV09634.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 851

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/788 (37%), Positives = 442/788 (56%), Gaps = 22/788 (2%)

Query: 12  KGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSK 71
            G+ +  +   ++AVF    G+    +I  I+LIR+R   + +  E  S L++I   L +
Sbjct: 66  AGLSVSAIDVMQLAVF---VGVTGAALISAIVLIRERARTSAENVELRSRLADINAALRR 122

Query: 72  YHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKAT 131
             +LL   +   +VW  +++ PE+IG L      P+     L+F  WL       L  A 
Sbjct: 123 SEALLNLRDQRVVVWAAENKKPELIGTLPVESGAPEDRAAFLAFGRWLMPRSAAALEHAV 182

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
             LR++ + FDLV E+Q    +++ GR S +   +R LSL       A   ++ ++L+  
Sbjct: 183 AGLREKAKPFDLVIESQAGAPLEVHGRKSAAHVLVRFLSLSETQRSQARLKIENQRLAAD 242

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
                 L D+L+   W R + G + W N +Y    E E         E ++    + +  
Sbjct: 243 HDTMIGLLDALNMPAWLRGEDGGLKWVNRAYADAVEAENAEAAVR--EKKEFLGGQARDA 300

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH---- 307
           + +       F +++ST+  G+ + + +     S G AG+A D S    V  +       
Sbjct: 301 IAAQHRTHPVFEQSLSTVIEGDRRVFAVTDFAGSDGSAGLACDTSAIEAVRGEYERTVRS 360

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             + L  L  A+AIFD +  L+F N++F +LW ++  FL + P N  LL+ LRS  K+ E
Sbjct: 361 HADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLEAGFLHSAPDNALLLDRLRSEGKIAE 420

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           Q  W+ WKE +   Y++ E+ +  WHLP+G+T+ V+    P+GG  W+FENLT ++DLE+
Sbjct: 421 QPEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLES 480

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +Y T V+VQGET+D+L+EGVAVFGPDGR++LSNPAF +LW        P  H+  I   C
Sbjct: 481 RYQTAVRVQGETLDNLAEGVAVFGPDGRLRLSNPAFATLWGLSGEAAKPSVHVSTIRDLC 540

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R   +S      AA +T FDDER+   G  EL + +VL Y++IPLPN Q M+TFV+VTD
Sbjct: 541 DRQAADSPWPGFVAA-VTGFDDERRDRHGQTELNNGNVLSYAMIPLPNGQVMMTFVDVTD 599

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           SV  ERAL +KNEAL+K+D++KN FVQHVSYELRSPLTNIIGFT+LL     G L  KQ 
Sbjct: 600 SVHVERALKDKNEALQKSDQLKNEFVQHVSYELRSPLTNIIGFTELLSQPTTGPLTQKQR 659

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YVE++S+SS +LL +VNDILDLATVDAGIM+L+ S + ++  +    + +A ++ E++I
Sbjct: 660 EYVEHVSSSSAVLLTIVNDILDLATVDAGIMQLDISEVQVDRTIAAAAELVADRLEEHSI 719

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R++V +     +F  D  R+ QI   +LSNA +++ + ST+ L          FSV ++G
Sbjct: 720 RLEVEAASAPKTFHGDEVRVRQILYNLLSNAANYAPEASTIRLTCRHLADGVEFSVHDDG 779

Query: 728 SSIPEDMCKSVFNRFV------SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             +P D+  SVF RF            G         SIV+SF+ LHGG V I +  +  
Sbjct: 780 PGMPPDVLDSVFRRFEPRANGGRRRGAGLGL------SIVKSFVELHGGSVRIETGKDKG 833

Query: 782 TTINCRIP 789
           TT+ C  P
Sbjct: 834 TTVICTFP 841


>gi|86747750|ref|YP_484246.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86570778|gb|ABD05335.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 837

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/783 (32%), Positives = 413/783 (52%), Gaps = 10/783 (1%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75
           I  L   ++        +L  +++  ILL+R R   A +     + +  +  +  ++ +L
Sbjct: 49  IVDLNRHELVTLAMAVSVLGFSVMSAILLMRTRQRAAAQEARLRAEVQTLQAESDRFRAL 108

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDIP---QTDTDLLSFENWLKFHHYIKLSKATE 132
           L     + I W   D+ P+I G +   +           +L+F  WL     +++  A +
Sbjct: 109 LFAEPQVLISWSAGDDRPQISGDIALLLPNDAHGGQPQRVLAFGTWLPPEPALQIDHAVD 168

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
            L  +G++F L   T    AI+  GR  G  A LRI  L G+  ELA+ + + K L +  
Sbjct: 169 ALLDKGEAFLLHLTTSTGRAIEAMGRAVGGQAILRIRELSGVRRELADMSRRFKMLQDET 228

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
            + +   D+  + +W R  +G++ +AN         +      A+G + +L     +  +
Sbjct: 229 DMLRGFADAAPWPIWTRRASGELNFANA--AYARAADASSPADAVGRNLELLDSTDRGNL 286

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-- 310
             + A +  F   +  +  G  + + +  +    G AG+A+D S+   +   L    E  
Sbjct: 287 ARALAEDSEFAARLPIVVAGERRYFDVRALRLKGGSAGMAVDSSEAAALGAALVRMAEAH 346

Query: 311 --ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
              L  L+  +A+FD  R L F+N S+ +LW++D  FL ++P +  +L+ LR+A KLPE+
Sbjct: 347 RRTLDQLSSGVAVFDAQRRLAFYNDSYRKLWDLDRTFLDSHPDDSSVLDRLRAARKLPEE 406

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            +++ WK  +   Y++ E  K  W+LP+G+ + ++ T N  GG  ++F+++T  +DL+ +
Sbjct: 407 RDFREWKNRLHEAYRAVEADKAIWYLPDGRAISIVTTPNQEGGVTYLFDDVTESLDLQRR 466

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           Y  L+ VQ ET+D+LSE VAVFG +G  +L NPAF  +W      L+   HI  + A C 
Sbjct: 467 YGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPAFTRMWNLSPEALNDRPHIETVEAWCR 526

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
             Y++   W      IT  DD RK +   LE    +VL    +PLP+  TMLTF +++D+
Sbjct: 527 PLYDDDASWQALRGAITGIDD-RKQVALKLERKDGTVLSCKTMPLPDGATMLTFQDISDT 585

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ERAL E+NEAL  AD IK  FV HVSYELRSPLT IIGF  LL     G LN KQS+
Sbjct: 586 ENVERALRERNEALETADRIKIDFVHHVSYELRSPLTTIIGFAHLLGDPSTGPLNDKQSE 645

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+ YI++S+  LL ++N+ILDLA++DAG M LN   I +   +    + I  ++  + I 
Sbjct: 646 YIAYITSSTNALLAIINNILDLASIDAGAMTLNLGPIEIRRTIAAAAEGIQDRLARDQIT 705

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + + +D  +G FV D +R++Q+   +L+NA+ FS   +TV L   +   + +F+V + G 
Sbjct: 706 LDIDTDPAIGEFVGDERRVVQVLYNLLANAIGFSPNEATVKLVVRKKGTNVVFTVTDAGP 765

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I   +   VF+ F S++   + RG GLGL++V SF+ LHGG V + S     T++ C  
Sbjct: 766 GIAPALKDKVFDLFESDSQGSRHRGPGLGLALVRSFVELHGGKVEVDSVVGHGTSVICEF 825

Query: 789 PSK 791
           P +
Sbjct: 826 PIE 828


>gi|17988310|ref|NP_540944.1| alkaline phosphatase synthesis sensor protein phoR [Brucella
           melitensis bv. 1 str. 16M]
 gi|17984083|gb|AAL53208.1| alkaline phosphatase synthesis sensor protein phor [Brucella
           melitensis bv. 1 str. 16M]
          Length = 768

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/769 (38%), Positives = 458/769 (59%), Gaps = 21/769 (2%)

Query: 34  LLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP 93
           +   ++    LIR R+ +A + NE  S  +++     +  +LL   +   +VWDG +   
Sbjct: 1   MGAALLSAGWLIRDRSKIANENNELRSKFADLNLIAQRNEALLNMKDQRIVVWDGHNVRA 60

Query: 94  EIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153
           +++GQL      PQ     L+F  WL+      L +A   LR++ ++FDL  ET N   +
Sbjct: 61  DVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGSLL 120

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
            + GR SG  A     SL G+ +E A    + ++L++ I + + L D ++   W RD  G
Sbjct: 121 DVHGRTSGGFAVACFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWLRDGNG 180

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
            I W N++Y +  +       + I E R+LF  + ++R+      E    E ++ + HG+
Sbjct: 181 RIEWVNLAYAQAVDMANAS--QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGD 238

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQ 329
            + + ++ V    G  G+  D+++   V D+L+       E L  L+ A+AIFD    LQ
Sbjct: 239 RRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQ 298

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           F N++FV+LW +D+A+L T PSN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +
Sbjct: 299 FFNQAFVKLWGLDVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEE 358

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
             WHLP+ +T+ V+   +P+GG  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAV
Sbjct: 359 HMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAV 418

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           FG DGR++LSNP+F +LW      +  GTHI  IA  C++   +    D F + +T F D
Sbjct: 419 FGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLD 477

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           +R    G +EL   ++L ++++PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IK
Sbjct: 478 QRDGRMGQVELSDGAILSFAVVPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIK 537

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           N FVQHVSYELRSPLTNIIGFT+LL+T   GSLN +Q +Y+++IS SS++LL +VNDILD
Sbjct: 538 NDFVQHVSYELRSPLTNIIGFTELLQTPAFGSLNERQLEYLDHISTSSSVLLTIVNDILD 597

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           LATVDAGIM+L    + + + ++     ++ ++ ++NI + V     +  F AD  R+ Q
Sbjct: 598 LATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQ 657

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS----- 744
           +   +LSNA++++ +GS ++L+ ARD  D +F+V ++G  +P ++  +VF RF S     
Sbjct: 658 VLFNLLSNAVNYAPEGSNIVLQVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGG 717

Query: 745 --NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                            IV+SF+ LHGG V I + +E  TT+ CR PS+
Sbjct: 718 RRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVICRFPSE 759


>gi|220921597|ref|YP_002496898.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219946203|gb|ACL56595.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 830

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/782 (34%), Positives = 431/782 (55%), Gaps = 9/782 (1%)

Query: 14  IEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYH 73
           +      +        + G+++ + I  +L IR+R   A++ ++  + L+++     +  
Sbjct: 40  LPATGALAHNAMALALLIGLIVFSTILSLLHIRERGRWARREHDLVAELADLRGAHDRAA 99

Query: 74  SLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT--DTDLLSFENWLKFHHYIKLSKAT 131
            LL     + I W G+DE P+I G     +D  ++     +L+F  WL       L  A 
Sbjct: 100 LLLGSERQIIITWCGRDE-PQIEGDASLAMDGTRSASPRRVLAFGTWLSAADAAALDAAV 158

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
           + LR  G+ F L   T     I+ +G+     A LR+  L G   EL E     ++    
Sbjct: 159 DTLRSRGERFRLTVRTLGGRTIEAQGQAVSGRALLRLRELTGERQELVELRAMLQEARGS 218

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
           +SV   L D++   VW R + G +LWAN +Y    E      ++A+ E  +L     ++ 
Sbjct: 219 LSVLAALLDAIPQPVWRRGRDGRLLWANAAYVAAVEAGD--RERALAEGTELLDRVAREE 276

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE- 310
                +  +     VS +  G  ++  +  V    G  GIA+DVS+  +V   L    E 
Sbjct: 277 AGRRRSSGQGGALRVSAVMAGARRTLDVTEVAVESGSVGIAVDVSELESVRADLQRQMEA 336

Query: 311 ---ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               L  L  A+AIFD  + L FHN ++ +LW++D  FL  NP + E+L+ LR+A KLPE
Sbjct: 337 NARTLDQLPTAVAIFDARQRLIFHNAAYRQLWDLDPGFLDGNPLDGEILDALRNARKLPE 396

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           Q ++++WK  + S Y+++E  ++ WHLP+G+TL V+   NP+GG  ++F++++ +V LE+
Sbjct: 397 QADFRSWKTGVLSAYRAAEAQENWWHLPDGRTLRVVADPNPQGGLTYLFDDVSERVHLES 456

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +YN L++VQ ET+D L E VAVFG DGR+KL+N AF ++W+     L    HI  + A C
Sbjct: 457 RYNALMRVQSETLDTLREPVAVFGSDGRLKLANRAFTAIWRIGPELLGTQPHIDEVIALC 516

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                  + W      +T   D R +L   L L   +VL+ +  PLP+  T+LT ++VT 
Sbjct: 517 RPLSPAEEPWTEIRGAVTGLMDARHALACRLALKDGTVLDCAAQPLPDGATLLTHIDVTA 576

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           SV  ERALTEKNEAL +   +++ FV HVSYELRSPLTNIIGFT+LL    +G+LN++Q 
Sbjct: 577 SVNVERALTEKNEALERTARLRDEFVHHVSYELRSPLTNIIGFTELLGDETVGALNTRQR 636

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y ++I  SS  LL ++NDILDLA++DAG M+L    + +   +    + +  ++ E  I
Sbjct: 637 EYADHIMRSSAALLVIINDILDLASIDAGSMELTREVVDVQATIAAAVRGVEDRLAEAAI 696

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +       +G FVAD +R+ QI   +LSNA+ FS+ G TV+++A + + +  F+V + G
Sbjct: 697 TLDRDVPADIGGFVADGKRIRQILFNLLSNAIGFSAPGQTVVVQARKTDREIAFAVIDQG 756

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +P ++   VF+RF S+    + RGVGLGLSIV SF+ LHGG + I+S+    T + C 
Sbjct: 757 RGMPPEVVARVFDRFESHTLGTRHRGVGLGLSIVRSFVELHGGRIDIASAPGQGTKVTCT 816

Query: 788 IP 789
            P
Sbjct: 817 FP 818


>gi|27375868|ref|NP_767397.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27349006|dbj|BAC46022.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 862

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/762 (34%), Positives = 413/762 (54%), Gaps = 7/762 (0%)

Query: 35  LTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE 94
             +++  ILL+R R   AK      + + E+  Q  ++ +LL     + I W   D   +
Sbjct: 96  GFSVMAAILLMRTRVRTAKNEARLRARIGELQLQADRFGALLFAEPQILISWPAGDNRAQ 155

Query: 95  IIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIK 154
           I G +   +    +   +L+F  WL     +++  A + LR  G  F L   T +   ++
Sbjct: 156 ISGDVSMVLPRDSSPQRVLAFGTWLPPEPALQMDHAVDALRDRGDGFQLTLTTAHGHTLE 215

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
             GR  G  A +RI  L G+  +LAET L+ K LS+   + +    +  + +W + + G 
Sbjct: 216 AIGRAIGGQAIVRIRELSGLRRDLAETNLRYKALSDETEMLRGFAAAAPWPIWAKGENGA 275

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           + +AN +Y + TE     F  A     +L     +  M        NF   +  +  G  
Sbjct: 276 LTFANPAYVRATEAAS--FSDAHERKLELLDSADRGAMERGLKDAANFTSRLPIVIGGER 333

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQF 330
           + Y +  V    G  G+AID S+   ++  L    E     L  L+  +A+FD +R L F
Sbjct: 334 RIYDVRAVNVGSGSVGVAIDASEADALSSALVRMAEAHRRTLDQLSSGVAVFDGHRRLAF 393

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           +N S+  LW++D  FL  NP +  +L+ LR+A KLPEQ +++ WK  +   Y++ E  KD
Sbjct: 394 YNDSYRRLWDLDRTFLDANPDDSSVLDQLRAARKLPEQPDFRAWKAKLHEAYRAVEAAKD 453

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           TW+LP+G+ L V+ T NP GG  ++F+++T  ++L  +++ +++VQ ET+D L+EGVAVF
Sbjct: 454 TWYLPDGRALSVVTTPNPEGGVTYLFDDVTESLELARRFDGMIRVQRETLDSLAEGVAVF 513

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
           G +G+ +L NPAF  +WK   + +    HI+ +   C + +++   W      +TS +  
Sbjct: 514 GSNGKAQLFNPAFVRMWKLSSDAMRDEPHIQTVEGWCHQLFDDPVVWRQIREAVTSIES- 572

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R  +   L+    SVL+  I PL +  TMLTF ++TD+   ERAL E+NEAL  AD++K 
Sbjct: 573 RADVPLKLDRKDGSVLDGMIRPLHDGATMLTFQDITDTENVERALRERNEALEAADQMKV 632

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            FV HVSYELRSPLT IIGF   L     G L  KQ++Y++Y++ S+  LL L N+ILDL
Sbjct: 633 DFVHHVSYELRSPLTTIIGFAHFLSDPSTGPLTPKQAEYLDYVTKSTNALLALTNNILDL 692

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           AT+DAG MKL    + ++  +    + I  ++  + IR+KV     +GSF+ D +R++Q+
Sbjct: 693 ATIDAGAMKLELGPVDVSKTIELAAEGIQDRLATDRIRLKVEIAPDIGSFIGDEKRVVQV 752

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +L+NA+ FS + STV + A R     +F+V ++G  IP DM   VFN F S +   +
Sbjct: 753 LYNLLANAVGFSPQDSTVGISARRTEHSVVFTVTDSGPGIPADMKDKVFNWFESRSQGSR 812

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RG GLGLS+V SF+ LHGG V + S     T + C  P+ +
Sbjct: 813 HRGAGLGLSLVRSFVELHGGKVRVDSIVGRGTVVICDFPTDQ 854


>gi|92115685|ref|YP_575414.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
 gi|91798579|gb|ABE60954.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
          Length = 838

 Score =  715 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/779 (33%), Positives = 417/779 (53%), Gaps = 8/779 (1%)

Query: 19  LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE 78
           L    +       G+L  +++  ILL+R R   A       + + E+     ++ +LL  
Sbjct: 55  LSRPDLTALALALGVLGFSVVAAILLMRTRIRAAANEQRLRTEIRELQSDADRFRALLFA 114

Query: 79  NNCLTIVWDGKDETPEIIGQLHQRIDIPQTDT-DLLSFENWLKFHHYIKLSKATEKLRKE 137
              + I W   ++ P+I G +   +         +L+F  WL     +++  A + LR  
Sbjct: 115 EPQVLISWGAGEDRPQISGDIALLLPQDAKPPLRILAFGTWLPPEPALQMDHAVDALRNA 174

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           G+ F L   T     ++  GR  G  A +RI  L G+  +LAETTL+   L     + + 
Sbjct: 175 GEGFLLNLVTSAGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAETTLRHNSLLAETGMLRA 234

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
              +  + +W R + G++ +AN +Y + TE        AI  + +L   + +  M  +  
Sbjct: 235 FAAAAPWPLWARGEDGNLNFANAAYARATEAASAT--DAIQRNLELLDSDDRIAMARALN 292

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILH 313
               F   +  +  G  + Y +  +  + G AGIA+D S+   ++  L          L 
Sbjct: 293 DHAAFAARLPVVIGGERRMYDVHALRAAGGSAGIALDASETAALSQALERMADAHRRTLD 352

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            L+  +A+FD  R L F+N S+  LW++D AFL  NP++  +L+ LR+A KLPEQ +++ 
Sbjct: 353 QLSSGVAVFDGQRRLAFYNDSYRRLWDLDRAFLDGNPNDSSVLDRLRAARKLPEQPDFRA 412

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           WK  +   Y+++E  KD W+LP+G+ L ++ T NP GG  ++F+++T  ++L  +Y+ L+
Sbjct: 413 WKARLHEAYRANEAAKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLELARRYDRLI 472

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            VQ ET+D L+E VAVFG +GR +L NPAF  +WK     LS   HI  +   C   +++
Sbjct: 473 TVQRETLDSLTEAVAVFGSNGRAQLFNPAFARMWKLSPEALSQQPHIDTVEGWCKPLFDD 532

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            D W      +T  D+ R +++  LE    SVL+   +PLP+  TMLTF ++TDS   ER
Sbjct: 533 DDAWQTIRNAVTGIDN-RSAVRLKLERKDGSVLDCMTMPLPDGATMLTFHDITDSENVER 591

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E+N+AL  AD++K  FV HVSYELRSPLT IIGF  L+     G L  KQ+QY++YI
Sbjct: 592 ALRERNDALETADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLTEKQAQYIDYI 651

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           ++S+  LL L N+ILDLAT+DAG M L    + +   +    + I  ++    I ++V  
Sbjct: 652 TSSTDALLALTNNILDLATIDAGAMTLELGPVDVRKTIAAATEGIQDRLTRERIVLEVDV 711

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +G+F+ D +R++Q+   +L+NA  FS +G+ + + A R      F+V ++G  IP +
Sbjct: 712 DPDIGNFIGDERRIIQVLYNLLANAAGFSPQGAVIAVSARRTAHSVSFAVTDDGPGIPPE 771

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +   VF+ F S A+  + RG GLGLS+V SF+ LHGG V    + +  T + C  P  +
Sbjct: 772 VKDKVFDWFESRANGSRHRGAGLGLSLVRSFVELHGGRVHFDPTVKRGTRVVCDFPLDQ 830


>gi|13474243|ref|NP_105811.1| two-component sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
 gi|14024995|dbj|BAB51597.1| two-component sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
          Length = 851

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/793 (37%), Positives = 447/793 (56%), Gaps = 22/793 (2%)

Query: 7   TIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEIC 66
                 G+ I T+   ++AVF    G+     +  I+LIR+R   + +  E  S +++I 
Sbjct: 61  AAVATAGLSINTVEVMQLAVF---VGVTGAAFLSAIVLIRERARTSAENVELRSRVADIN 117

Query: 67  DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK 126
             L +  +LL   +   +VW  +++ PE+IG L      P+  +  L+F  WL       
Sbjct: 118 AALRRSEALLNLRDQRVVVWASENKKPELIGTLPVESGAPEERSAFLAFGRWLMPRSAAA 177

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           L  A   LR++ + FDLV E+Q    +++ GR S +   +R +SL       A   +  +
Sbjct: 178 LEHAIAGLREKARPFDLVIESQAGAPLEVHGRKSAAHILVRFVSLSETQRSQARLKIDNQ 237

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
           +L+        L ++L    W RD+ G + W N +Y    E E       + ++R+    
Sbjct: 238 RLAADHDTMIGLLEALKMPAWLRDEHGRLKWVNRAYADAVEAESAEAA--VRDAREFLGG 295

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
           + ++ + +       F +++ST+  G+ + + +    +  G AG+A D S    +  +  
Sbjct: 296 QAREAIDAQHKTHPVFEQSLSTVIEGDRRVFAVTDFASPDGSAGLAADTSAIEAIRGEYE 355

Query: 307 H----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                  + L  L  A+AIFD +  L+F N++F +LW +D  FL + P N  LL+ LRS 
Sbjct: 356 RTVRSHADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDSGFLHSAPDNALLLDRLRSE 415

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
            K+ EQ  W+ WKE +   Y++ E+ +  WHLP+G+T+ V+    P+GG  W+FENLT +
Sbjct: 416 GKIAEQPEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEK 475

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +DLE++Y T V+VQGET+D+L+EGVAVFGPDGR++LSNPAF +LW        P  H+  
Sbjct: 476 MDLESRYRTAVRVQGETLDNLAEGVAVFGPDGRLRLSNPAFATLWGLSGEAAKPNVHVST 535

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           I   C R   +S      AAI T FDDER+   G  EL + +VL Y++IPLPN Q M+TF
Sbjct: 536 IRDLCDRQAVDSPWPGFVAAI-TGFDDERRDRHGQSELNNGTVLRYAVIPLPNGQVMMTF 594

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+VTDSV  ERAL +KNEAL K+D++KN FVQHVSYELRSPLTNIIGFT+LL     G L
Sbjct: 595 VDVTDSVHVERALKDKNEALEKSDQLKNDFVQHVSYELRSPLTNIIGFTELLSLPTTGPL 654

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N KQ +YVE++S+SS++LL +VNDILDLATVDAGIM+L+ S + ++  +    + +A ++
Sbjct: 655 NQKQREYVEHVSSSSSVLLTIVNDILDLATVDAGIMQLDISEVHVDRTIAAAAELVADRL 714

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E++IR++V +     +F  D  R+ QI   +LSNA +++ + ST+ L          FS
Sbjct: 715 QEHSIRLEVDARAAPKTFHGDEIRIRQILYNLLSNAANYAPEASTIRLACRHLADGVEFS 774

Query: 723 VKNNGSSIPEDMCKSVFNRFV------SNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           V ++G  +P D+  SVF RF            G         SIV+SF+ LHGG+V I +
Sbjct: 775 VHDDGPGMPPDVLDSVFRRFEPRANGGRRRGAGLGL------SIVKSFVELHGGNVRIET 828

Query: 777 SDEGVTTINCRIP 789
             +  TT+ C  P
Sbjct: 829 GKDKGTTVICTFP 841


>gi|218517057|ref|ZP_03513897.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 636

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/628 (55%), Positives = 453/628 (72%), Gaps = 6/628 (0%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG + W N +Y    
Sbjct: 1   RFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRLTWVNQAYGDAV 60

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
           E      Q+AI E R++     ++R+ +++  E  F +T+ST+ HGN   + +V V    
Sbjct: 61  EARS--PQQAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRTFFDVVDVTLPG 118

Query: 287 GEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G AG+A+DVS    V  +L        E L +L   +AIFD  R LQF+N++FV LWE+D
Sbjct: 119 GSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFYNQAFVALWELD 178

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           +AFL   P N ELLE LR+A KLP+QLNWK+WKE   SVY++ +T  D WHLPNGQTL V
Sbjct: 179 IAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAALSVYRALDTQSDLWHLPNGQTLRV 238

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
             T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFGPDGRI+LSNPA
Sbjct: 239 FATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPA 298

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           FR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER+S QGTLEL S
Sbjct: 299 FRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRSGQGTLELFS 358

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN FVQHVSYELRS
Sbjct: 359 GLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFVQHVSYELRS 418

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLTNIIGFTDLL+T  +G LN +Q++Y+++IS SS++LL LVNDILDLATVDAGIM+LNY
Sbjct: 419 PLTNIIGFTDLLRTQGVGPLNERQAEYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNY 478

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + I LNDLL++V   IA ++ E+ + +++ +   LGS VAD QRL QI  K+LSNA +FS
Sbjct: 479 AEIDLNDLLDDVSMQIADRLQESGVVLEITAPAYLGSIVADPQRLKQILLKLLSNAANFS 538

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS++ L+  R+  DF+FSV++ G  I  DM  +VF+RF + A  G+R G GLGLSIV+
Sbjct: 539 PEGSSISLECRREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGKRGGAGLGLSIVD 598

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
           SF++LH G V+I S     TT+ CRIPS
Sbjct: 599 SFVSLHHGDVTIDSEPGKGTTVVCRIPS 626


>gi|170738842|ref|YP_001767497.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168193116|gb|ACA15063.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 830

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/797 (34%), Positives = 438/797 (54%), Gaps = 11/797 (1%)

Query: 1   MMAGMATIGIGKG--IEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNET 58
           ++ G+    +G    + + +  +        + G+++ + I  +L IR+R   A++  + 
Sbjct: 25  VLTGLPEAAMGAPALVPVPSSLAHSAMALALLVGLIVFSTILSLLHIRERARWARRERDL 84

Query: 59  YSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQ--TDTDLLSFE 116
            + ++++     +   LL     + +VW G+DE P I G     +D  +  +   +L+F 
Sbjct: 85  SAEVADLRGAHDRAALLLGSERQIVVVWSGRDE-PLIEGDASLAMDGTRTASPRRVLAFG 143

Query: 117 NWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYS 176
            WL       L  A + LR  G+ F L A T     ++ +G+  G  A LR+  + G   
Sbjct: 144 TWLTAADAAALDAAVDTLRSRGERFRLTARTLGGRTVEAQGQAVGGRALLRLREITGERQ 203

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           EL E     ++    +SV   L D++   VW R + G +LWAN +Y    E      ++ 
Sbjct: 204 ELVELRATLQEARGSLSVLAALLDAIPQPVWRRGRDGRLLWANAAYVAAVEATD--RERV 261

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           + E  +L     +          +     VS +  G  ++  +  V    G  GIA+DVS
Sbjct: 262 VAEGVELLDRAARDEAERRRTSREAGALRVSAVVAGARRTLDVTEVALETGSVGIAVDVS 321

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +  +V   L    E     L  L  A+AIFD  + L FHN ++ +LW++  AFL  +P +
Sbjct: 322 ELESVRADLQRQMEANVRTLDQLPTAVAIFDARQRLIFHNAAYRQLWDLGPAFLDGSPLD 381

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            E+L+ LR+A KLPEQ ++++WK  + S Y+++E  ++ WHLP+G+TL V+   NP+GG 
Sbjct: 382 GEILDALRNARKLPEQADFRSWKTGVLSAYRAAEAQENWWHLPDGRTLRVVADPNPQGGL 441

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            ++F++++ +V LE++YN L++VQ ET+D L E VAVFG DGR+KL+N AF ++W+    
Sbjct: 442 TYLFDDVSERVHLESRYNALMRVQSETLDTLKEPVAVFGSDGRLKLANRAFMAIWRIGPE 501

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L+   H+  I   C       + W      +T   D R ++   LEL   +VL+ +  P
Sbjct: 502 TLAAQPHVDEIIGLCRSLSAAEEPWTEIRGAVTGLMDARHAVASRLELKDGTVLDCAAQP 561

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LP+  T+LT ++VT SV  ERALTEKNEAL +   +++ FV HVSYELRSPLTNIIGFT+
Sbjct: 562 LPDGATLLTHIDVTASVNVERALTEKNEALERTARLRDEFVHHVSYELRSPLTNIIGFTE 621

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL    +G+LN++Q +Y ++I  SS  LL ++NDILDLA++DAG M+L    + +   + 
Sbjct: 622 LLGDETVGALNTRQREYADHIMRSSAALLVIINDILDLASIDAGSMELTREVVDVQATIA 681

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              + I  ++ E  I + +     +G FVAD +R+ QI   +LSNA+ FS+ G TV+++A
Sbjct: 682 AAVRGIEDRLAEAAITLDLDVPADIGGFVADGKRIRQILFNLLSNAIGFSAPGQTVVVQA 741

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +   +  FSV + G  +P ++   VF+RF S+    + RGVGLGLSIV SF+ LHGG +
Sbjct: 742 RKTGAEIAFSVIDQGRGMPPEVVARVFDRFESHTLGTRHRGVGLGLSIVRSFVELHGGRI 801

Query: 773 SISSSDEGVTTINCRIP 789
            I+S+    T + C  P
Sbjct: 802 DIASAPGQGTRVTCTFP 818


>gi|260463220|ref|ZP_05811422.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031070|gb|EEW32344.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
          Length = 851

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/788 (37%), Positives = 449/788 (56%), Gaps = 22/788 (2%)

Query: 12  KGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSK 71
            G+ I T+   ++AVF    G+  T  +  I+LIR+R   + +  E  S ++++   L +
Sbjct: 66  AGLSISTIEVMQLAVF---VGVTGTAFLSAIVLIRERARTSAENVELRSRVADVNAALRR 122

Query: 72  YHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKAT 131
             +LL   +   IVW  +++ PE++G L      P+     L+F  WL       L  A 
Sbjct: 123 SEALLNLRDQRVIVWASENKKPELVGILPVESGAPEERAAFLAFGRWLMPRSAAALEHAI 182

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
             LR++ + FDLV E+Q    +++ GR S +   +R +SL       A   ++  +L+  
Sbjct: 183 AALREKARPFDLVIESQAGAPLEVHGRKSAAHVLVRFVSLSETQRSQARLKIENHRLAAD 242

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
                 L ++L    W RD+ G + W N +Y    E E       + ++++    + ++ 
Sbjct: 243 HDTMIGLLEALKMPAWLRDEHGRLKWVNRAYADAVEAESAEAA--VRDAKEFLGGQAREA 300

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH---- 307
           + +   L   F +++ST+  G+ + + +    ++ G AG+A D S   ++  +       
Sbjct: 301 IEAQHKLHPVFEQSLSTVIEGDRRVFAVTDFASADGSAGLACDTSAIESIRGEYERTVRS 360

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             + L  L  A+AIFD +  L+F N++F +LW +D  FL + P N  LL+ LRS  K+ E
Sbjct: 361 HADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDSGFLHSAPDNALLLDRLRSEGKIAE 420

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           Q  W+ WKE +   Y++ E+ +  WHLP+G+T+ V+    P+GG  W+FENLT ++DLE+
Sbjct: 421 QPEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLES 480

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +Y T V+VQGET+D+L+EGVAVFGPDG+++LSNPAF +LW  +     P  H+  I   C
Sbjct: 481 RYRTAVRVQGETLDNLAEGVAVFGPDGKLRLSNPAFATLWGLDAEATKPNVHVSTIRDLC 540

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R   +S  W  F A IT FDDER+   G  EL + +VL Y++IPLPN Q M+TFV+VTD
Sbjct: 541 DRQAVDS-PWPSFVAAITGFDDERRDRHGQTELNNGTVLRYAMIPLPNGQVMMTFVDVTD 599

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            VR ERAL +KNEAL K+D++KN FVQHVSYELRSPLTNIIGFT+LL     G L  KQ 
Sbjct: 600 GVRVERALKDKNEALEKSDQLKNDFVQHVSYELRSPLTNIIGFTELLSLPTTGPLTQKQR 659

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YVE++ +SS++LL +VNDILDLATVDAGIM+L+ S + ++  +    + +A ++ E++I
Sbjct: 660 EYVEHVGSSSSVLLTIVNDILDLATVDAGIMQLDISEVHVDRTIAAAAELVADRLQEHSI 719

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R++V +     +F  D  R+ QI   +LSNA +++ + ST+ L          FSV ++G
Sbjct: 720 RLEVDAKAAPKTFHGDETRIRQILYNLLSNAANYAPEASTIRLACRHLADGVEFSVHDDG 779

Query: 728 SSIPEDMCKSVFNRFV------SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             +P D+  SVF RF            G         SIV+SF+ LHGG V I +  +  
Sbjct: 780 PGMPPDVLDSVFRRFEPRANGGRRRGAGLGL------SIVKSFVELHGGGVRIETGKDKG 833

Query: 782 TTINCRIP 789
           TT+ C  P
Sbjct: 834 TTVICTFP 841


>gi|2801651|gb|AAB97416.1| putative sensor protein [Bradyrhizobium japonicum]
          Length = 873

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/792 (33%), Positives = 422/792 (53%), Gaps = 7/792 (0%)

Query: 6   ATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEI 65
           A   +G   E+      ++ V  T   +L  +++  ILL+R R   AK      + + E+
Sbjct: 76  AADFVGTLSELLDFNRQELVVLVTALALLGFSVMAAILLMRTRVRTAKNEARLRARIGEL 135

Query: 66  CDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYI 125
             Q  ++ +LL     + I W   D   +I G +   +    +   +L+F  WL     +
Sbjct: 136 QLQADRFGALLFAEPQILISWPAGDNRAQISGDVSMVLPRDSSPQRVLAFGTWLSPEPAL 195

Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           ++  A + LR  G  F L   T +   ++  GR  G  A +RI  L G+  +LAET L+ 
Sbjct: 196 QMDHAVDALRDRGDGFQLTLTTAHGHTLEAIGRAIGGQAIVRIRELSGLRRDLAETNLRY 255

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           K LS+   + +    +  + +W + + G + +AN +Y + TE            S  L  
Sbjct: 256 KALSDETEMLRGFAAAAPWPIWAKGENGALTFANPAYVRATEAASFSDVHERHAS-SLLD 314

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
              +  M        NF   +  +   + + Y +  V    G  G+AID S+   ++  L
Sbjct: 315 SADRGAMERGLKDAANFTSRLPIVIAASARIYDVRAVNVGSGSVGVAIDASEADALSSAL 374

Query: 306 THTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
               E     L  L+  +A+FD +R L F+N S+  LW++D  FL  NP +  +L+ LR+
Sbjct: 375 VRMAEAHRRTLDQLSSGVAVFDGHRRLAFYNDSYRRLWDLDRTFLDANPDDSSVLDQLRA 434

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           A KLPEQ +++ WK  +   Y++ E  KDTW+LP+G+ L V+ T NP GG  ++F+++T 
Sbjct: 435 ARKLPEQPDFRAWKAKLHEAYRAVEAAKDTWYLPDGRALSVVTTPNPEGGVTYLFDDVTE 494

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            ++L  +++ +++VQ ET+D L+EGVAVFG +G+ +L NPAF  +WK   + +    HI+
Sbjct: 495 SLELARRFDGMIRVQRETLDSLAEGVAVFGSNGKAQLFNPAFVRMWKLSSDAMRDEPHIQ 554

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   C + +++   W      +TS +  R  +   L+    SVL+  I PL +  TMLT
Sbjct: 555 TVEGWCHQLFDDPVVWRQIREAVTSIES-RADVPLKLDRKDGSVLDGMIRPLHDGATMLT 613

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++TD+   ERAL E+NEAL  AD++K  FV HVSYELRSPLT IIGF   L     G 
Sbjct: 614 FQDITDTENVERALRERNEALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPSTGP 673

Query: 602 LNSKQSQYVEYISASSTIL-LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           L  KQ++Y++Y++ S+  L L L N+ILDLAT+DAG MKL    + ++  +    + I  
Sbjct: 674 LTPKQAEYLDYVTKSTNALALALTNNILDLATIDAGAMKLELGPVDVSKTIELAAEGIQD 733

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           ++  + IR+KV     +GSF+ D +R++Q+   +L+NA+ FS + STV + A R     +
Sbjct: 734 RLATDRIRLKVEIAPDIGSFIGDEKRVVQVLYNLLANAVGFSPQDSTVGISARRTEHSVV 793

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           F+V ++G  IP DM   VFN F S +   + RG GLGLS+V SF+ LHGG V + S    
Sbjct: 794 FTVTDSGPGIPADMKDKVFNWFESRSQGSRHRGAGLGLSLVRSFVELHGGKVRVDSIVGR 853

Query: 781 VTTINCRIPSKE 792
            T + C  P+ +
Sbjct: 854 GTVVICDFPTDQ 865


>gi|319898223|ref|YP_004158316.1| sensor histidine kinase [Bartonella clarridgeiae 73]
 gi|319402187|emb|CBI75718.1| Putative sensor histidine kinase [Bartonella clarridgeiae 73]
          Length = 825

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/779 (36%), Positives = 429/779 (55%), Gaps = 31/779 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           I +FG+I+   L   I II++I  + +L K      + LSE   +L  Y  LL E     
Sbjct: 64  IVLFGSISCSSLF--ICIIVIINTKRALWKSWKMIQANLSE---KLKNYEWLLEETGQCL 118

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
            +WD     P I+G +           D   FE WL+ +   +  +A  +LR  G SF+L
Sbjct: 119 FIWDNPTALPRIVGNIPALQKAGIHQKDFQCFEKWLEKNSLQQFDQALTQLRCNGCSFEL 178

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T +   ++I G ++G+ A +R   +    SE         ++   + + + L D + 
Sbjct: 179 SVTTTSKIMLQITGIIAGTAAIVRFQDISAQQSENIRLQKDAIQILTELKMQRNLLDHIR 238

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW RD  G I + N ++++ T        +       LF E     + ++   E  F 
Sbjct: 239 EPVWIRDCEGKICFTNRAFREMTNF------QENNNIVDLFNETT---LCTTDETEAIFQ 289

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ----LTHTYEILHNLTVAI 319
           + V T+  G    + + R+    G A  A D S    +  +    L    E L  ++ A+
Sbjct: 290 KHVYTVVKGERHHFHLTRITTKEGMAAFARDDSAYENLVKEMGRILQSHCETLDQISTAV 349

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD N+ L+F N +F  LW ++++FL + PS+   LE LR    + E  +W+ WKE + 
Sbjct: 350 AIFDANQKLKFCNHAFKILWPLEISFLESEPSHSLFLEHLREKGFIGEHPDWRVWKEELL 409

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            VY+ +E+++  W+LP+G+T+ VI + +P+GG  W++ENLT ++DLE +YNTL+K+QGET
Sbjct: 410 KVYRLTESNQQIWNLPDGRTVRVISSPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGET 469

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VFG DGR++LSNPA   LW    N L  GTHI  +   CS      + W  
Sbjct: 470 LDKLSEGVVVFGTDGRLRLSNPALSKLWSLPHNLLVEGTHITQLQNHCSAL-TTGEEWKQ 528

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   IT F ++R +  G ++L S  +++Y++ PLPN QTMLTFVNVTD+V   RAL EKN
Sbjct: 529 FTQFITGFAEKRDAYSGRIDLKSGIIIDYTLAPLPNGQTMLTFVNVTDTVHIARALQEKN 588

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL KAD ++N FVQHVSYELR+PLTNIIGF+D+L+    GS+N +Q +Y+ YI + S +
Sbjct: 589 EALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSINERQQEYLGYIHSESGV 648

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM L+   + + + + +    +  ++H   I +       L  
Sbjct: 649 LLNIVNDILDLATLDAGIMILDIKPVHIAEAMTQAVARVEERLHGRQITLSQHISPSLKF 708

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +RL QIF  +LSNA++F+++ ST+  +A       IFSV N GS IP D+   +F
Sbjct: 709 ISADVKRLHQIFVNVLSNAINFATEKSTIEFRADTQGDHIIFSVHNEGSDIPTDILDRIF 768

Query: 740 NRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF S++H       G         S+V+SF+ LH G V I +     TT+ C  P+KE
Sbjct: 769 KRFSSHSHHGGRAGAGLGL------SLVKSFVELHDGRVEIFTGMGQGTTVKCFFPNKE 821


>gi|323138125|ref|ZP_08073198.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322396587|gb|EFX99115.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 842

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/795 (31%), Positives = 399/795 (50%), Gaps = 9/795 (1%)

Query: 3   AGMATIGIGKGIEICT--LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60
           A  A     + I +     F  ++  F    G+ L + +  +  I +R    ++      
Sbjct: 35  ALFAPAASAQAINLVGGLPFDSEVVSFAFSGGLALFSAVVALTHISERKRWQRREAALVE 94

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120
            L E   +L +  + L     + I W G D  P+I       +    +   +L F  WL 
Sbjct: 95  ELEETRARLDRAKTFLASEAQILIAWAGPDSEPDINAS-SMLLAESVSPRRILGFGAWLA 153

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
                 L  A E LR++G+ F +            EGR  G  A LRI  + G   EL  
Sbjct: 154 PKDAQDLEAAVESLRRKGEGFRMPLAGLAGRHFDAEGRAVGGSAVLRIREVSGDRLELIG 213

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              +     N ++  + L ++    VW RD  G + + N         E    + A+   
Sbjct: 214 LRERHAAAQNELAGLRTLLEATPAPVWIRDAEGRLSFVNS--AYAAAVEAAEPRDAVARG 271

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            +L ++  +     S      +   V  +  G      + +       A IAID  +  T
Sbjct: 272 LELLEQPARAAAAQSLEKGAVWRARVPAVVAGERHLLDVTQTATPEMAASIAIDRHEVET 331

Query: 301 VN----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           V      Q+      L  L  A+AIFD+ R L +HN ++ +LW+ID  FL   P++ E+L
Sbjct: 332 VRADLQQQMQSHVRTLDQLPTAVAIFDRGRRLIYHNDAYAKLWQIDAPFLEQKPTDGEIL 391

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           + LR+  ++P + ++K WKE +F  Y+S E  + TWHLP+G+ + V+   N +GG  +++
Sbjct: 392 DRLRAEQRVPVESDYKAWKERLFEAYRSPEPIRHTWHLPDGRIIDVVAHPNTQGGVTYLY 451

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++ T   DLET++N L + Q ET++ L EGVAVFG DGR+   NPAF  LW+ +  +L  
Sbjct: 452 DDTTKAYDLETRFNALNRTQSETLETLREGVAVFGADGRLNFCNPAFAQLWRLDVEQLDK 511

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                 I A C + ++ ++ W      +T   + R+     +E     VL+ +   L + 
Sbjct: 512 KPRFDAIVAQCRKLHDNAETWAELQCFVTGLAEMREGFTRRIERSDGVVLDCTAQSLLDG 571

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +LTFV+VT  V  ERALT++N+AL  A++++N F+ HVSYELRSPL NI GF  LL  
Sbjct: 572 AALLTFVDVTADVNVERALTDRNKALLAAEKLRNDFIHHVSYELRSPLNNINGFVHLLGE 631

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G LN +Q +Y+ Y+S SS  LL +++DILDLAT+D   ++L +S +     +    +
Sbjct: 632 ESTGPLNPRQLEYLGYVSKSSAALLAIIDDILDLATIDQDALELEFSDVDAEATMRAAIE 691

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  ++ EN+I +++++   +G+F  D +R+ QI   +LSNA+ FS  G TV L A R  
Sbjct: 692 GVQDRLAENSIDVQIVAMDDVGTFRGDAKRVRQILFNLLSNAIGFSRPGQTVTLAAMRRG 751

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + +F V + G  IP ++ + VF+RF S+    + RGVGLGLSIV +F+ LHGG V I S
Sbjct: 752 DEVVFKVTDRGRGIPPEVLERVFDRFESHTAGSRHRGVGLGLSIVRAFMELHGGKVFIDS 811

Query: 777 SDEGVTTINCRIPSK 791
           +    TT+ C  P++
Sbjct: 812 APGEGTTVTCVFPAQ 826


>gi|298290314|ref|YP_003692253.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
 gi|296926825|gb|ADH87634.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
          Length = 839

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/772 (33%), Positives = 410/772 (53%), Gaps = 8/772 (1%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +     + G+++      I+ +R R    ++    +  +S +  Q+ +  +LL     + 
Sbjct: 63  LIGLALVVGLIVFATTTAIVHLRYRRQSLRREMAAFGEISRLEAQIDEARALLMAEPQIV 122

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           +VW      PEIIG       +      +L+F +WL      ++  A ++LR  G     
Sbjct: 123 VVWRDPAADPEIIGNTPAFTGV-AAPARILAFGSWLTPASAREIEAAVDRLRGRGTPLAA 181

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              TQ+   ++ +GR  G+   LR+  + G+  + A+     + L    S  + L D+L 
Sbjct: 182 TLATQDGRFVEADGRPVGAAVVLRLRDITGVRLDQAQLEAAYRALDAESSALRTLLDALP 241

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
              W   + G + W+N +Y    E        A      L  ++ + +   + A    F 
Sbjct: 242 APAWVDGEDGRLRWSNAAYAHAVEARDAS--DAASRGLMLLDQQSRTQAEKAHAASLPFK 299

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAI 319
             +  +  G  +   ++ V    G AGIA+D ++   V  +L          L  L  A+
Sbjct: 300 ARLPVVVAGTRRVLDVLEVPAGGGAAGIALDATEAEVVRAELAQVVGAHRRTLDQLATAV 359

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIF  ++ L FHN ++  L+++D AFL   P++  +L+ LR+A +LPEQ +++ W+E + 
Sbjct: 360 AIFGADQRLVFHNAAYARLFDLDAAFLDDRPTDGAVLDRLRAARRLPEQADFRLWREELH 419

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           + Y++ E  +  WHLP G+TL V+   NP GG  ++F+ +T ++ LE+++N+L ++Q ET
Sbjct: 420 AAYRAIEPREHWWHLPGGRTLRVVTAPNPEGGITYLFDEVTERLALESRFNSLTRIQSET 479

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D L+E VAVFG DGR+ L N AFR LW+ +   L    HI  +AA C     ++  W  
Sbjct: 480 LDALAEAVAVFGSDGRLGLVNSAFRRLWQLDAAMLDAHPHIDAVAAACRPLTADAAVWAR 539

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             A +T  +  R   +  +E    ++L+ S  PLP+  T++T  +VTDSV  ERAL E+N
Sbjct: 540 LTATVTGIE-ARMPTEFRMERNDRTILDGSTQPLPDGATLVTLRDVTDSVNVERALVERN 598

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +AL  AD +K++FV HVSYELRSPLT IIGF  LL  + +G LN KQ  YV +I+ SS  
Sbjct: 599 DALVAADHLKSTFVSHVSYELRSPLTTIIGFAQLLDDTGIGPLNVKQRAYVNHITESSAA 658

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++NDILDLAT+DAG M L  + + +   ++   + +  ++ E  IR+ +      GS
Sbjct: 659 LLAIINDILDLATIDAGSMALELTEVDVRAAMDAAAEGVRDRLAEGGIRLSIELQNAAGS 718

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F AD +R+ QI   +LSNA+ F+ +GSTV L A R     IF V++ G  +P ++    F
Sbjct: 719 FRADAKRVRQILYNLLSNAVGFAPEGSTVTLSAERREDGVIFRVRDMGPGVPPEIGARAF 778

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +RF S+    + RGVGLGLSIV S + LHGG VS++ +  G T + C  P +
Sbjct: 779 DRFESHTAGSRHRGVGLGLSIVRSLVALHGGTVSLAPAQGGGTLVTCIFPLE 830


>gi|188584128|ref|YP_001927573.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179347626|gb|ACB83038.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 857

 Score =  693 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/810 (31%), Positives = 414/810 (51%), Gaps = 37/810 (4%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75
           +  + +  +A    I G++L   I  ++ +R+R    +K       L+++     +   L
Sbjct: 38  LGAMHTHNVAGLAVILGLILFATILSLVYLRERVGWMRKERALQDELTDLRGAHDRAEML 97

Query: 76  LTENNCLTIVWDGKDETPEIIGQLH----------------------------QRIDIPQ 107
           L     + + W G+ E P I+G                                    P+
Sbjct: 98  LHSERQVLVAWAGRGE-PMIVGDPAFAQDLRNQDLRNPDLRNQELRGYEAWGQDPQGAPR 156

Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR 167
               LL+F  WL       L  A   LR+ G  F +   +     I+ +G+  G  A LR
Sbjct: 157 GSRHLLTFGTWLAAQDAQLLEAAVATLRERGTGFRMNLRSLAGRFIEAQGQAVGGRALLR 216

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +        EL E   + ++    +S    L D+L   VWHRD AG + + N +Y    E
Sbjct: 217 LRETTEERRELIELRHRLEEAKRGLSALAGLLDALPQPVWHRDTAGALAFVNTAYAAAVE 276

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE--TVSTLEHGNNKSYKIVRVLNS 285
                 + A+    +L     + ++   +       +   +S +  G  ++  +      
Sbjct: 277 APN--REAALSHGLELLDRSARDQIARQTGRPGLVAQPLRLSAVVAGARRTLDVSESTLE 334

Query: 286 FGEAGIAIDVSKEITVN----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
            G  GIA+DVS+  +V      Q+      L  L  A+A+FD  + L FHN ++  LW++
Sbjct: 335 TGRVGIAVDVSELESVRADLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDL 394

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           D AFL   P + E+L+ LR+A KLPEQ ++++WK ++ + Y++ E     W+LP+G+TL 
Sbjct: 395 DPAFLEGRPLDGEILDRLRAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLR 454

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           V+   NP+GG  +++ +++  + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N 
Sbjct: 455 VVADPNPQGGLTYLYHDVSESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANR 514

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           AF + W+ +   L+   H+  + A C     +   W      IT   + R      L++ 
Sbjct: 515 AFAATWRLDPATLAGKPHVDAVIAACRALTPDQSPWAGIRQSITGLSETRSGHACRLDIN 574

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +VL+ S  PLP   T+LTF++VT S   ERALTEKN+AL +A +++++FV HVSYELR
Sbjct: 575 DGTVLDCSSQPLPLGATLLTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELR 634

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           SPLTNIIGFT LL    +G+LN +Q +Y E+I  SS  LL ++NDILDLA++DAG ++L 
Sbjct: 635 SPLTNIIGFTQLLGDETVGALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQ 694

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             TI +   ++   + I  ++ E++IR+ +     +GS  AD +R+ QI   +LSNA+ F
Sbjct: 695 RETIDVRATVDAAVRGIEDRLAESDIRLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGF 754

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           S  G  V ++A R+  +   +V + G  I  ++   VF+RF SN    + RGVGLGLSIV
Sbjct: 755 SEPGQQVRVEARREGAELRLTVIDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIV 814

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            SF+ LHGG V I S+    T + C  P +
Sbjct: 815 RSFVELHGGRVEIHSAPGTGTRVTCLFPVE 844


>gi|240849710|ref|YP_002971098.1| sensor histidine kinase protein [Bartonella grahamii as4aup]
 gi|240266833|gb|ACS50421.1| sensor histidine kinase protein [Bartonella grahamii as4aup]
          Length = 821

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/779 (36%), Positives = 439/779 (56%), Gaps = 30/779 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+ G I+   L T + +I  +R + +  K +    +  SE   +L  Y  LL E     
Sbjct: 58  LALCGGISCASLLTCLAVI--MRAKKTAQKPLKIIQANFSE---KLKYYEWLLEETEQFL 112

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           ++W+     P ++G L     I     D   FE W++ +   +L     +LR +   FDL
Sbjct: 113 LIWENPTTLPRVVGALSALQKIGIDQKDFQRFELWVEENSLRELDYVLTQLRCKCHPFDL 172

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T N+  +++ G ++G+ A  R   +    SE A       +L   + + + L D + 
Sbjct: 173 SITTTNNVLLQVTGVIAGTVAIARFQDISKQQSENARLQKDIARLLTELRMQRNLLDLIQ 232

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW +D  G + + N ++++ T+     F++   E   LF E  +++   +   E  F 
Sbjct: 233 EPVWIKDCEGKVCFINRAFREMTD-----FREDSDEVGDLFNENTQRK---TDETETIFQ 284

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAI 319
           E V T+  G    + + R+  + G A  A D S    +  +L        E L  ++ A+
Sbjct: 285 EHVHTVIDGERHRFHLTRITTAEGMAAFARDDSAYENLAHELSYVLQSHCETLDQISTAV 344

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD N+ L+F N +F  LW ++ +FL + PS+   LE LR    + E  +W+ WKE +F
Sbjct: 345 AIFDTNQKLKFCNHAFKILWPLETSFLESEPSHTLFLERLREKGLIAEHPDWRAWKEELF 404

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+ +E+++  W+LP+G+T+ VI   +P+GG  W++ENLT ++DLE +YNTL+K+QGET
Sbjct: 405 KAYRQTESNQQIWNLPDGRTVRVISNPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGET 464

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VFG DGR++LSNPA   LW    N L  GTHI  + + CS        WD 
Sbjct: 465 LDKLSEGVVVFGTDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQSHCSAL-TLGQEWDQ 523

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   IT F ++R++  G ++L +D +++Y+++PLP+ QTMLTFVNVTD+V   RAL E+N
Sbjct: 524 FTKFITGFAEKRETYSGRIDLKNDMIIDYTLVPLPDGQTMLTFVNVTDTVHVARALQERN 583

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL  AD ++N FVQHVSYELR+PLTNIIGF+D+L+    GS+N +Q +Y+ +I + S  
Sbjct: 584 EALESADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSINKRQQEYLGHIHSESGT 643

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM+L+  ++ + D + +    I  +++  +I +       L S
Sbjct: 644 LLNIVNDILDLATLDAGIMELDIKSVNIADAMIQAVARIEDRLNGRHITLLQQISPSLNS 703

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +RL QIF  +LSNA++F+++ ST+       + + +FSV N GS IPED+   +F
Sbjct: 704 ISADEKRLHQIFVNVLSNAINFATEASTIEFCVDEQDDNIVFSVHNEGSDIPEDVLDRIF 763

Query: 740 NRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF S++H       G         S+V+SF+ LHGGHV I +     TT+ C  P  +
Sbjct: 764 KRFSSHSHHGGRAGAGLGL------SLVKSFVELHGGHVEILTGSGKGTTVKCFFPLPK 816


>gi|49474858|ref|YP_032899.1| sensor histidine kinase protein [Bartonella henselae str.
           Houston-1]
 gi|49237663|emb|CAF26846.1| Sensor histidine kinase protein [Bartonella henselae str.
           Houston-1]
          Length = 821

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/780 (35%), Positives = 441/780 (56%), Gaps = 31/780 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+ G I+   L T + +I  +R + +L K      +F +++ ++L  Y  LL E     
Sbjct: 58  LALCGGISCASLFTCMAVI--MRAKKTLQKP---LQTFQTDLSEKLKYYEWLLEETGQYL 112

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           ++W+     P ++G +     +     D   FE WL+ +   +L  A ++LR +   F+L
Sbjct: 113 LIWENPTALPRVVGNIPTLQKVGIHQQDFQRFEFWLEENSLRELDYALKQLRYKSHPFEL 172

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T+N+  + + G ++G+ A  R   +    SE A       ++   + + + L D + 
Sbjct: 173 SLFTKNNMLLHVTGVIAGTVAIARFQDISLQQSENARLQKNIARILTELRMQRNLLDVIQ 232

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW +D  G I + N ++++ T      F++   E   LF E  +++   +   E  F 
Sbjct: 233 EPVWIKDSEGKICFINRAFREITG-----FREGSNEVVDLFNETTQRK---TDETETVFQ 284

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAI 319
           E V T+  G    + + R+  + G A  A D S    + ++L   +    E L  ++ A+
Sbjct: 285 EHVHTVLDGERHRFHLTRITTAEGMAAFARDDSAYENLANELRRVFQNHCETLDQISTAV 344

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           A+FD N+ L+F N +F  LW ++ +FL + PS+   LE LR    + E  +W+TWKE + 
Sbjct: 345 AVFDSNQKLKFCNHAFKILWPLENSFLESEPSHTLFLERLREKGLIGEHPDWRTWKEELL 404

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+ +E+++  W+LP+G+T+ VI + +P+GG  W++ENLT ++DLE +YNTL+K+QGET
Sbjct: 405 KAYRQTESNQQIWNLPDGRTVRVISSPHPQGGVTWLYENLTEKIDLEQRYNTLIKIQGET 464

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VFG DG ++LSNPA   LW    N L  GTHI  + + CS      + WD 
Sbjct: 465 LDKLSEGVVVFGTDGCLRLSNPALSKLWSLPYNLLVEGTHITQLQSYCSPLTLRQE-WDW 523

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   IT F +ER +  G ++L +  +++Y+++PLPN +TMLTFVNVTD+V   RAL EKN
Sbjct: 524 FTKFITGFAEERDTYSGRMDLKNGMIIDYTLVPLPNGETMLTFVNVTDTVHVARALQEKN 583

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL  AD ++N FVQHVSYELR+PLTNIIGF+D+L+    G +N +Q +Y+ +I + S  
Sbjct: 584 EALESADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGPINERQQEYLGHIHSESGS 643

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM+L+   + + D + +    +  +++  +I +       L  
Sbjct: 644 LLNIVNDILDLATLDAGIMELDIKPVNIADAMVQAVARVEERLNGRHITLLQQISPSLNF 703

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  RL QIF  +LSNA++F+++ ST+   A   + D +FSV N GS IPED+   +F
Sbjct: 704 ISVDATRLHQIFVNVLSNAINFATEASTIEFCAEEKDDDIVFSVHNEGSDIPEDILDRIF 763

Query: 740 NRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792
            RF S++H       G         S+V+SF+ LHGG V I +     TT+ C  P SKE
Sbjct: 764 KRFSSHSHHGGRAGAGLGL------SLVKSFVELHGGRVEIFTGTGQGTTVKCFFPISKE 817


>gi|304392409|ref|ZP_07374350.1| histidine kinase [Ahrensia sp. R2A130]
 gi|303295513|gb|EFL89872.1| histidine kinase [Ahrensia sp. R2A130]
          Length = 866

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/793 (31%), Positives = 427/793 (53%), Gaps = 29/793 (3%)

Query: 25  AVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTI 84
            VF    G     +     LIR+R +L          L+++  +  +  +LL   +   +
Sbjct: 63  LVFVFFVGAFSFAMWSATWLIRERRALDDSHRMLSLELADLKARHERAEALLDAPDQRVV 122

Query: 85  VWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLV 144
           VWDG++  P   G L      P    D ++F  W+  +       A ++LR   ++F++ 
Sbjct: 123 VWDGEENPPTCRGALVSTSGTPSESADFVAFGTWMAPNSAQSFDHAIQRLRSSAEAFEMP 182

Query: 145 AETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
            ET+N   ++ +GR  GS AF+R LSL G  + LA    +   L       + L +++  
Sbjct: 183 IETRNGNILEAQGRAFGSHAFVRFLSLTGDRAALALLESQYTSLMATTDTMRTLLEAVPM 242

Query: 205 LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS---------- 254
            VW RD+   + WAN +Y K+ +T  +   +A+  ++ L     + R+            
Sbjct: 243 PVWLRDREEGLTWANPAYVKSIDTADL--AQAVASNQHLLDAGDRNRVSEQLHGAHDADG 300

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV----NDQLTHTYE 310
           ++A    F + +     G+ ++  +  + +  G+AG+A+D+S+   V       L    +
Sbjct: 301 NAAARTTFQKRLHATMAGDRRTVDVTVIEHDGGQAGLAVDMSEVEQVQSDLRRTLQGHAQ 360

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            L  L  A+AIFD  + L FHN++  +LW +   FL + PSN      LR ++++  Q +
Sbjct: 361 TLDQLATAVAIFDAGQKLAFHNQALADLWALAPGFLDSAPSNAAFFNELRDSDRIANQPD 420

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           W  W+  + +V+ ++E  +  WHLP+G++L VI   + +GG  W+FEN+T Q+++E++Y 
Sbjct: 421 WAKWRGELLAVHHATEPAEHFWHLPDGRSLRVIANPHRQGGVTWVFENITEQLEMESRYI 480

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            + +VQGET+DHL E +AVF  DGR+KLSNPA + LW  E+ +++  T I  +A  C   
Sbjct: 481 AMTQVQGETLDHLGEAIAVFASDGRLKLSNPALQELWHLEDEQVAADTPIAEVARYCGEK 540

Query: 491 YNE------------SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             E            +  WD     +T   D R ++ G L L+ D VL+Y+++PLPN QT
Sbjct: 541 LAEDGTVDEPGQAESAMVWDELVTGVTGVTDSRDTIDGRLHLMEDRVLDYALVPLPNGQT 600

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L+F +V+DSV  E+ L E+NEAL  A  +KN F++HVSYE R+PLTNI GF ++L+   
Sbjct: 601 LLSFADVSDSVSLEQTLLERNEALEAAQRLKNEFLEHVSYEFRAPLTNIKGFAEILQGGA 660

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G LN KQ++Y+++I++SS +L  LV+++LDLAT+DAG ++L+   + L D L   + ++
Sbjct: 661 FGPLNEKQAEYIDHIASSSGVLHTLVDNLLDLATMDAGALELDLEQLDLADTLEAARSAV 720

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              + +  + +++  +     FV D  ++ +I   +L NA  FS KG T+ L       D
Sbjct: 721 MPALKDRGLALEINVEDD-TRFVGDSDQIQKILGNLLQNASRFSPKGGTIRLDGVTSGDD 779

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +  + + G  IP ++  ++F RF S+A R  +RG GLGL++ ++   LHGG + + S+ 
Sbjct: 780 VVIRIADEGPGIPAEIRDTIFERFSSSAVRSHKRGAGLGLAVAKALCGLHGGALELDSAV 839

Query: 779 EGVTTINCRIPSK 791
           E   T  CR+P +
Sbjct: 840 EEGATFICRLPIR 852


>gi|319407902|emb|CBI81556.1| sensor histidine kinase protein [Bartonella schoenbuchensis R1]
          Length = 817

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/779 (35%), Positives = 424/779 (54%), Gaps = 30/779 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+FG I+   L   I +I+ I  + +  K +    +   E   +L  Y  L  E     
Sbjct: 54  LALFGGISCASLLICIAVIVAI--KKASWKPLKMIQADFFE---KLKYYEWLFEETGQCL 108

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           ++W+     P I+G +     +     +   F  WL+     +L +A  +LR  G  F+L
Sbjct: 109 LIWENPTALPHIVGNISALQKMEINQKNFQCFGRWLEESSLRQLDQALIELRCNGCPFEL 168

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T N   +++ G ++G+ A  R  ++    SE         +L   +++ + L D + 
Sbjct: 169 SITTTNKILLQVTGVIAGTAAIARFQNISTQQSENIRLQKNIAELLKELNLQRNLLDHIQ 228

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW +D  G I + N ++++ T      F++       LF E  +     +   E  F 
Sbjct: 229 EPVWIQDCKGKICFINRAFREITG-----FKEGSNHITDLFNEATQ---CKTGEAETVFQ 280

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAI 319
           E V T+  G  + + + RV    G A  A D S    +  ++        E L  ++ A+
Sbjct: 281 EHVHTVVDGERRHFHLTRVTTREGMAAFARDDSAHENLTKEMRRILQNHCETLDQISTAV 340

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD ++ L+F N +F  LW ++ +FL + PS+  LLE LR    L E  +W+ WKE +F
Sbjct: 341 AIFDAHQKLKFCNHAFKVLWPLENSFLESEPSHSLLLEQLREKGLLGEHPDWRAWKEELF 400

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+  E+ +  W+LP+G+T+ VI + +P+GG  W +ENLT ++DLE +YNTL+K+QGET
Sbjct: 401 KAYQQIESDQQIWNLPDGRTVRVIASPHPQGGVTWFYENLTEKIDLERRYNTLIKIQGET 460

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VFG DGR++LSNPA   LW    N L  GTHI  +   CS        W+ 
Sbjct: 461 LDKLSEGVVVFGTDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQTHCS-TLTVGQEWEQ 519

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   IT F D+R +  G ++L + ++++Y+++PLPN QTMLTFVNVTDSV   RAL E+N
Sbjct: 520 FTKFITGFADKRDAYSGRIDLKNGTIIDYTLVPLPNGQTMLTFVNVTDSVHIARALQERN 579

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL  AD ++N FVQHVSYELR+PLTNI+GF+D+L+    GS+N +Q +Y+ +I + S  
Sbjct: 580 EALESADRLRNEFVQHVSYELRTPLTNIVGFSDILRDQIFGSINERQHEYLGHIQSESNA 639

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM+L+   + + D + +    +   ++   I         L  
Sbjct: 640 LLNIVNDILDLATLDAGIMELDIKPVNIADAMAQAVARVEEHLNGRYITFSQQISPSLNF 699

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            +AD  RL QIF  ILSNA++F+++ ST+   A +   + +FSV N GS IP D+   +F
Sbjct: 700 ILADATRLHQIFVNILSNAVNFATEESTIEFCANKQGDNIVFSVHNEGSDIPTDILDRIF 759

Query: 740 NRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF S  H       G         S+V+SF+ LHGGHV I +     TT+ C  P ++
Sbjct: 760 KRFSSRPHHGGRAGAGLGL------SLVKSFVELHGGHVKILTGTGQGTTVKCFFPVQK 812


>gi|49473713|ref|YP_031755.1| sensor histidine kinase protein [Bartonella quintana str. Toulouse]
 gi|49239216|emb|CAF25535.1| Sensor histidine kinase protein [Bartonella quintana str. Toulouse]
          Length = 814

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/779 (34%), Positives = 435/779 (55%), Gaps = 30/779 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+ G ++   L   + +I+  ++            +  ++  ++L  Y  LL E     
Sbjct: 56  LALCGGVSCASLLICMAVIMHAKK-----ASQKFLKTIQADFSEKLKYYEWLLEETGQYL 110

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           ++W+     P +IG +           +   FE WL+    ++L  A  +LR +   F+L
Sbjct: 111 LIWETPTALPHVIGNIPALQKAGIPQQNFQCFELWLEETSLLELDHALTQLRCKSHPFEL 170

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T+N+  +++ G ++G+ A  R        SE A       ++   + + + L D + 
Sbjct: 171 SITTKNNMLLQVTGVIAGTVAIARFQDTSTQQSENARLQKDITRILTELRMQRNLLDLIQ 230

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW +D  G + + N ++++ T      F++   +   LF E  +++   +   E  F 
Sbjct: 231 EPVWIQDCEGKVCFINRAFREMTG-----FREDSNKVVDLFNETTQRQ---TDETETIFQ 282

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAI 319
           E V T+  G    + + R+  + G A  A D S    ++++L        E L  ++ A+
Sbjct: 283 EHVHTVIGGERYRFHLTRITTTEGMAAFARDDSAYENLSNELRRVLQSHCETLDQISTAV 342

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD N+ L+F N +F  LW ++ +FL + PS+  LLE LR    + E  +W+TWKE +F
Sbjct: 343 AIFDTNQKLKFCNHAFKILWPLENSFLESEPSHTLLLERLREKGLIGENPDWRTWKEELF 402

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+ +E+++  W+LP+G+T+ VI + +P+GG  W++ENLT ++DLE +YNTL+K+QGET
Sbjct: 403 KAYRQTESNQQIWNLPDGRTVRVISSPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGET 462

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VF  DGR++LSNPA   LW    N L  GTHI  + + CS        WD 
Sbjct: 463 LDKLSEGVVVFATDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQSYCSPL-TVGKEWDR 521

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   IT F ++R +  G ++L +  V++Y+++PLPN +TMLTFVNVTD++   RAL EKN
Sbjct: 522 FTKFITGFAEKRDTYSGRMDLKNGMVIDYTLVPLPNGETMLTFVNVTDTIYVARALQEKN 581

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L  AD ++N FVQHVSYELR+PLTNIIGF+D+L+    GS+N +Q +Y+ +I + S+ 
Sbjct: 582 ETLESADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSINERQKEYLGHIHSESST 641

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM+LN  ++ + D + +    +  +++  +I +       L  
Sbjct: 642 LLNIVNDILDLATLDAGIMELNIKSVNIADAMVQAVARVEERLNGRHITLLQQISPSLNF 701

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  RL QIF  ILSNA++F+++ ST+   A   + + +FSV N GS IP+D+   +F
Sbjct: 702 ISADATRLHQIFVNILSNAINFATEASTIEFCAEEQDNNIVFSVHNEGSDIPKDILDRIF 761

Query: 740 NRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF S++H       G         S+V+SF+ LH GHV I +     TT+ C  P  +
Sbjct: 762 KRFSSHSHHGGRAGAGLGL------SLVKSFVELHNGHVEILTGAGQGTTVQCFFPIPK 814


>gi|319406430|emb|CBI80070.1| sensor histidine kinase protein [Bartonella sp. 1-1C]
          Length = 820

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/779 (35%), Positives = 422/779 (54%), Gaps = 31/779 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           I +FG+IA   L  +I +I++I  + +L K      +  S+   +L  Y  LL +     
Sbjct: 58  IVIFGSIACSSL--LICVIVIINTKRALRKAWIMIQAHFSD---KLKHYEWLLEKTGQCL 112

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
            +WD     P IIG +           D   FE WL+   + +L +A  +LR  G SF+ 
Sbjct: 113 FIWDNPTALPRIIGNIPTLQKAGIHKKDFQHFEKWLEKSSFQQLDQALTQLRCNGCSFEF 172

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T     +++ G +SG+ A +R   +    SE      +  ++   +++ + L D + 
Sbjct: 173 SVMTITKIFLQVTGIISGTAAIVRFQDISAQQSENIRLQKETTQILTELNMQRNLLDHIQ 232

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW RD  G I + N ++++ T            E   +     +    ++   E  F 
Sbjct: 233 EPVWIRDCEGKIYFTNRAFREMTN---------FQEKNNIVDPFNETTQCTTDETEAIFQ 283

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAI 319
           + + T+  G    + + R+    G A  A D S    +  ++        E L  ++ A+
Sbjct: 284 KHIYTVVKGERHHFHLTRITTKEGMASFARDDSAYENLVKEMKRILQNHCETLDQISTAV 343

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD N+ L+F N +F  LW ++++FL + PS+  LLE LR    + E  +W  WKE +F
Sbjct: 344 AIFDANQKLKFCNHAFKILWPLEISFLESEPSHSLLLERLREKGFIGEHPDWHAWKEELF 403

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+ +E+++  W+LP+G+T+ VI + +P+GG  W++ENLT ++DLE +YNTL+K+QGET
Sbjct: 404 KAYQQTESNQQIWNLPDGRTVRVISSPHPQGGITWLYENLTEKIDLERRYNTLIKIQGET 463

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VFG DGR++LSNPA   LW    N    G HI  +   CS      + W  
Sbjct: 464 LDKLSEGVVVFGTDGRLRLSNPALSKLWSLPHNLPIEGAHITELQNHCSAL-TIGEEWKK 522

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           FA  IT   ++R +  G ++L S  +++Y++ PLPN QTMLTFVNVTD+V   RAL EKN
Sbjct: 523 FAQFITGCAEKRDTYSGRIDLKSGIIIDYTLAPLPNGQTMLTFVNVTDTVHIARALQEKN 582

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL KAD ++N FVQHVSYELR+PLTNIIGF+D+L+    G  N +Q +Y+ YI + S +
Sbjct: 583 EALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGPTNERQQEYLGYIHSESGV 642

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM L+   + + + + +    +  ++H  +I +       L  
Sbjct: 643 LLNIVNDILDLATLDAGIMILDIKPVHIAEAMAQAVARVEERLHGRHITLSQNISPSLKF 702

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  RL QIF  +L+NA++F+++ S +   A   +   IFSV N GS IP D+   +F
Sbjct: 703 MSADATRLHQIFVNVLNNAINFATEKSIIEFCANTQDDYIIFSVHNEGSDIPTDILDRIF 762

Query: 740 NRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF S+AH       G         S+V+SF+ LH G V I +     TT+ C  P K+
Sbjct: 763 KRFTSHAHHGGRAGAGLGL------SLVKSFVELHDGRVEILTGMGQGTTVKCFFPHKK 815


>gi|300023813|ref|YP_003756424.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525634|gb|ADJ24103.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 836

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/787 (31%), Positives = 417/787 (52%), Gaps = 9/787 (1%)

Query: 8   IGIGKGIEICTL-FSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEIC 66
            G   G  I ++ F  +         +     I +I  +       ++     S    + 
Sbjct: 33  AGFVNGHGIGSVDFDFRHTWLFLTVAVGALAAIAVIWRMGSMAR--REARAAKSESVHLR 90

Query: 67  DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK 126
             L+   +++     + + W+       +   L     +P+   ++L F  WL+      
Sbjct: 91  RNLAAADAIIRAEPQVLVFWEQGQAVRIVSHTLASVPGLPEHHAEILRFGQWLESTSAHS 150

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           L  A +KL   G+SF ++ +T     I+ EGR +G  A LR+  + G   E+A    +  
Sbjct: 151 LKAALDKLFVNGRSFSIILKTIAGGIIEAEGRAAGGRAVLRLKEVSGYKLEIARIEDQHA 210

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
            L+  I   + L ++L   VW R     ++W N +Y +  + +  +  + +    +L + 
Sbjct: 211 TLARDIRSSRALLNTLPMPVWLRGVDNRLIWVNAAYVQAVDAKSEI--EVLEHQIELLEG 268

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
             +K +  + A  + +   +  +  G  K++++V +      AG A+DV+   +   +L 
Sbjct: 269 RQRKSVSRALAAGQTYRSRIHLVSGGERKAHEVVVLPVDGMTAGAAVDVTDIESAQGELE 328

Query: 307 H----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                    L  +  A+AIF  +  L F+N +F +LW +D  +LA+NPS++ +L+ LR  
Sbjct: 329 RQSSAYDRTLDRVETAVAIFSPDHKLAFYNAAFAKLWSLDTDWLASNPSDNVILDRLREI 388

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             L   +N + WK  + + Y++     DTW+L +G+ LHV+    P GG  ++F + T +
Sbjct: 389 GVLEPVVNHRDWKAQVLACYQTGTPFDDTWNLTDGRILHVMAEQRPDGGVTFLFADETER 448

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + LE++YN L+ VQ ET++ L EGVAVFG +GR+KL N AF ++W  ++ RL+   H+  
Sbjct: 449 LSLESRYNALIDVQRETLNSLKEGVAVFGTNGRLKLFNKAFCNIWHMQQKRLAELPHVGE 508

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           + A     +  +D W      +T+F DER++  G +      V++Y+++PLP+  T++TF
Sbjct: 509 VIAAAQTLHPNNDTWRRIGHAVTAFLDERETFSGQMTRDDGVVVDYALMPLPDGATLMTF 568

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VTD+ RAERAL E+NEAL  AD +K +F+ H+SYELR+PL +IIGF+++L +   G L
Sbjct: 569 ADVTDAKRAERALVERNEALVAADRLKTNFIGHISYELRTPLNSIIGFSEMLASPLFGDL 628

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N+KQ +Y+  I +SS  LL ++NDILDLAT+DAG M+L  + + +  L++     I  + 
Sbjct: 629 NAKQREYLADIMSSSKTLLAIINDILDLATIDAGAMQLKPTPVGVRALIDAAILGIRERA 688

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N + I++    ++  FVAD  R+ Q+   +LSNA+ FS    TV L    +NG  IF 
Sbjct: 689 VRNRLTIEIAVADEVNEFVADEARMRQVLYNLLSNAVGFSKVNGTVRLACWSENGTIIFR 748

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V+++G  IP+D    +F+RF S +H    RG GLGLSIV+S + LHGG + + S +   T
Sbjct: 749 VEDDGVGIPKDRIGRIFDRFESQSHGSDHRGAGLGLSIVKSLVELHGGTIEVFSEENRGT 808

Query: 783 TINCRIP 789
            +  R+P
Sbjct: 809 RVTVRLP 815


>gi|319404942|emb|CBI78544.1| sensor histidine kinase protein [Bartonella sp. AR 15-3]
          Length = 820

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/779 (35%), Positives = 422/779 (54%), Gaps = 31/779 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           I +FG+IA   L  +I + ++I  + +L K      + LSE   +L +Y  LL +     
Sbjct: 58  IVIFGSIACSSL--LICVTIIINTKRALWKSWTMIQAHLSE---KLEQYEWLLEKTGQCL 112

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
            +WD     P  +G +           D   F+ WL+     +L +A  +LR  G SF+ 
Sbjct: 113 FIWDNPTALPYTVGNIPTLQKAGIYKKDFQYFDKWLEKSSLQQLDQALIELRYNGCSFEF 172

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T     +++ G ++G+ A +R   +    SE      +  ++   + +   L + + 
Sbjct: 173 SVTTTTKILLQVTGIIAGTAAIVRFQDISVQQSENIRLQKEVTQILTELKIQHNLLEHIQ 232

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW RD  G I + N ++++ T        +    +  LF E  +    ++   E  F 
Sbjct: 233 EPVWIRDCEGKICFTNRAFREMTNF------QEKNNTVDLFDETTQ---CTTDETETIFQ 283

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV----NDQLTHTYEILHNLTVAI 319
           + V T+  G    + + R+    G A  A D S    +       L    E L  ++ A+
Sbjct: 284 KHVYTVVKGERHHFHLTRITTKEGMAAFARDDSAYENLVKEMERILQSHCETLDQISTAV 343

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD N+ L+F N +F  LW ++++FL   PS+  LLE LR    + E  +W+ WKE +F
Sbjct: 344 AIFDANQKLKFCNHAFKILWPLEISFLENEPSHSLLLEHLREKGFIGEYPDWRAWKEELF 403

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+ +E+++  W+LP+G+T+ VI + +P+GG  W++ENLT ++DLE +YNTL+K+QGET
Sbjct: 404 KAYRQTESNQQIWNLPDGRTVRVISSPHPQGGITWLYENLTEKIDLERRYNTLIKIQGET 463

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VFG DGR++LSNP+   LW    N    GTHI  +   CS      + W  
Sbjct: 464 LDKLSEGVVVFGTDGRLRLSNPSLSKLWSLPHNLPVEGTHITELENHCSAL-TIGEEWKQ 522

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   IT F ++R    G ++L S  +++Y++ PL N QTMLTF NVTD++   RAL EKN
Sbjct: 523 FTQFITGFAEKRDIYSGRIDLKSGIIIDYTLTPLSNGQTMLTFANVTDTIHIARALQEKN 582

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL KAD ++N FVQHVSYELR+PLTNIIGF+D+L+    GS N +Q +Y+ YI + S +
Sbjct: 583 EALEKADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSTNERQKEYLGYIHSESGV 642

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM L+   + + + + +    +  ++H  +I +       L  
Sbjct: 643 LLNIVNDILDLATLDAGIMILDIKPVQIAEAMAQAVARVEERLHGRHITLLQNISPSLKF 702

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  RL QIF  +LSNA++F+++ ST+   A   +   +FSV N GS IP D+   +F
Sbjct: 703 MSADATRLHQIFVNVLSNAINFATEKSTIEFCADTQDNYIVFSVHNEGSDIPTDILDRIF 762

Query: 740 NRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF S++H       G         S+V+SF+ LH G V I +     TT+ C  P+++
Sbjct: 763 KRFTSHSHHGGRAGAGLGL------SLVKSFVELHNGRVEIFTGMGKGTTVRCFFPNQK 815


>gi|114704750|ref|ZP_01437658.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539535|gb|EAU42655.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 822

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/800 (32%), Positives = 425/800 (53%), Gaps = 22/800 (2%)

Query: 5   MATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSE 64
           MA  G+  G       S  I     IA  L T ++  + L++ R +L  +  +  + L +
Sbjct: 1   MAQTGLING-------SAPITALALIAVALGTMMVCAVYLMKYRAALTHENEQLRAELVD 53

Query: 65  ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHY 124
              + +++ +LL  ++   +V+    E P + G+L +    P++    L F  WL     
Sbjct: 54  RSQEANEFRALLGASDQRLLVYR-DSEIPRVFGELPKEAGSPRSPQRFLEFSGWLPIEVA 112

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
             L+ A E LR    SF +  +T+++  I++ GR  G  A +R     G+ ++L     +
Sbjct: 113 GDLAAAIENLRNNAVSFAISLDTRSNELIEVTGRTHGGLALVRFTHTAGLRAKLKRAGSE 172

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
             +    I   + L D+     W RD+ G + W N ++ K  +  G    + +    +  
Sbjct: 173 LTEALGTIDTMQALLDTAPLPAWLRDREGKLYWVNQAFSKAVD--GGSPDETVENGTEFL 230

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
            E  ++ + S+ +    +   +ST+   +   + +  +    G AG+AIDVS+   +  +
Sbjct: 231 AENDRREVASAVSQYGLYAGKLSTVVDADRHIFDVTELAGQLGTAGLAIDVSETENIRRE 290

Query: 305 LTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L  T     E L  L  A+A FD    L ++N +F  L+E+   FL ++P +   L+ LR
Sbjct: 291 LRQTIDSQSETLDKLGTAVARFDPETRLVYYNAAFKNLFELTDTFLQSDPDHVAFLDHLR 350

Query: 361 SANKLPEQLNWKTWKENI-FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
            A  LP +  + + +     + Y +++  +  WHL +G+TL V+ T +P+GG  ++FE++
Sbjct: 351 HAGVLPTETAFPSQRRKEDLAAYSATDPTETMWHLSSGRTLRVVATPHPQGGATFVFEDI 410

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T ++ LE +  T+ ++Q ET+D+L EGVAVFG DGR++LSNP F  +++ +   L     
Sbjct: 411 TERLKLEMEIKTVARLQRETLDYLGEGVAVFGGDGRLQLSNPIFGEMFEFDAAFLKSKPR 470

Query: 480 IRNIAATCSRYYNESD----GWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLP 534
           I+    T      +      GW   + ++TS D+  R S  G + L +   L Y  +PLP
Sbjct: 471 IQTFEDTAGVRIEDGTFDGTGWKGLSVLVTSIDENGRNSENGEVRLSNGMTLAYKAVPLP 530

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            AQTMLTF +V+D+  AER L EKN+AL +A+ IK  FV  +SYELRSPLT +IGF+ LL
Sbjct: 531 AAQTMLTFSDVSDARAAERMLREKNDALEEANRIKYDFVSFMSYELRSPLTTVIGFSQLL 590

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +LG+LN +QS Y+++I++S+  LL +VND LDLAT+DAGIM+L  S + +   +   
Sbjct: 591 AEPELGTLNERQSDYLDHITSSTRSLLAMVNDTLDLATIDAGIMELEVSHVDIAARVENA 650

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-- 712
            + +  ++HEN +R++V          AD  RL QI   +LSNA +F+ +GS + LKA  
Sbjct: 651 VEGVQERLHENQLRVEVDLTKSGDVLEADGARLTQILYNLLSNATNFAPQGSEIELKAWK 710

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +    +  F+V + G  IP D    +F RF +NA  G+  G GLGLSIV+S + LHGG +
Sbjct: 711 SETGSEVCFAVTDRGPGIPADQVDRIFERFETNAEGGRSSGPGLGLSIVKSLVELHGGEI 770

Query: 773 SISSSDEGVTTINCRIPSKE 792
            + + + G T + C +P+ +
Sbjct: 771 RVETPNGGGTRVICALPASQ 790


>gi|218532773|ref|YP_002423589.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218525076|gb|ACK85661.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 842

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/795 (31%), Positives = 411/795 (51%), Gaps = 22/795 (2%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75
           +  + +  +A    + G++L   I  ++ +R+R    +K       L+++     +   L
Sbjct: 38  LGAMQTHNVAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAQLRGAHDRAEML 97

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD-------------TDLLSFENWLKFH 122
           L     + + W G+ E P I+G      D+   D               LL+F  WL   
Sbjct: 98  LHSERQVLVAWAGRGE-PSIVGDAGFAQDLRNQDLRGQDSRGLQGGSRHLLAFGTWLAPQ 156

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
               L  A   LR+ G  F +   +     I+ +G+  G  A LR+        EL E  
Sbjct: 157 DAQLLDSAVATLRERGTGFRMNLRSLAGRYIEAQGQAVGGRALLRLRETTDERRELIELR 216

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
              ++ +  +S    L D+L   +WHR   G + + N         E    + A+    +
Sbjct: 217 HTLEEANRGLSALAGLLDALPQPIWHRSPDGALAFVNA--AYAAAVEAPSREAALSHGLE 274

Query: 243 LFKEEIKKRMISSSALEK--NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
           L     +++++  +           +S +  G  ++  +       G  GIA+DVS+  +
Sbjct: 275 LLDRSAREQIVRQARRPGLPAQALRLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELES 334

Query: 301 VN----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           V      Q+      L  L  A+A+FD  + L FHN ++  LW++D AFL   P + E+L
Sbjct: 335 VRADLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPLDGEIL 394

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           + LR+A KLPEQ ++++WK ++ + Y++ E     W+LP+G+TL V+   NP+GG  +++
Sbjct: 395 DRLRAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLY 454

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +++  + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N AF + W+ +   L+ 
Sbjct: 455 HDVSESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAG 514

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             H+  + A C     +   W      +T   + R      L++   +VL+ S  PLP  
Sbjct: 515 KPHVDAVIAACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLG 574

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T+LTF++VT S   ERALTEKN+AL +A +++++FV HVSYELRSPLTNIIGFT LL  
Sbjct: 575 ATLLTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGD 634

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             +G+LN +Q +Y E+I  SS  LL ++NDILDLA++DAG ++L   TI +   +    +
Sbjct: 635 ETVGALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVR 694

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            I  ++ E++I + +     +GS  AD +R+ QI   +LSNA+ FS+ G  V ++A R+ 
Sbjct: 695 GIEDRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVEARREG 754

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +   +V + G  I  ++   VF+RF SN    + RGVGLGLSIV SF+ LHGG V I S
Sbjct: 755 RELRLTVTDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHS 814

Query: 777 SDEGVTTINCRIPSK 791
           +    T + C  P +
Sbjct: 815 APGTGTRVTCLFPVE 829


>gi|182677583|ref|YP_001831729.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633466|gb|ACB94240.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 903

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/831 (32%), Positives = 432/831 (51%), Gaps = 60/831 (7%)

Query: 18  TLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLT 77
            L    +     I G+ L  I+  +   ++      +     + +  +  ++ +    + 
Sbjct: 56  MLEQANLLWPVLITGLSLVVILTALASRKEEKRARAREKALLTEIHALQTRIDRAELFVG 115

Query: 78  ENNCLTIVWDGKDETPEIIGQLH------QRIDIPQTDTDLLSFENWLKFHHYIKLSKAT 131
            +  L I W    E PEI G                +   LL+F++W+       L    
Sbjct: 116 LDPQLFIAWSAPGEKPEIAGDPGFLTGKNLATGSSPSPDSLLAFKSWMSLDDARDLQARI 175

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
           + LR++G+SF L     N   + IEGR  G  A +RI  +     +L +   +  ++   
Sbjct: 176 DLLREKGESFHLSLGG-NGQHLDIEGRPIGGRAVVRIRDVSAARRDLLQLREEQTQILAD 234

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
           ++  + L D++    W RD AG + W N++Y +  E      Q A+    +L +   +  
Sbjct: 235 LAAVRTLLDAVPHPAWQRDGAGHLSWVNLAYVRAIEARD--RQDAVVRGVELLEHPTRDA 292

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------------------------- 286
             ++ A    +    + +  G  +   I+ +                             
Sbjct: 293 SDATRATGHIWQARAAAVVAGARRMLDIIEMPVPVAANDMGQIHGRRAALHASNGSQGIT 352

Query: 287 ----------------------GEAGIAIDVSKEITVN----DQLTHTYEILHNLTVAIA 320
                                 G  G+A DVS+   +      Q       L  LT A+A
Sbjct: 353 NQGTLDQATIGQEAIDPGTIGKGAVGMASDVSELEAMRSVNVQQAEAHARTLDQLTTAVA 412

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           IFD+ + L FHN ++ +LW +D A+L   P++ E+L+ LR A+ LPEQ+++++WK+++FS
Sbjct: 413 IFDRTKRLVFHNTAYRQLWALDQAWLDQGPTDAEILDRLRMAHLLPEQVDFRSWKQDLFS 472

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            Y++ ET +  W+LP+G+TL  ++T NP+GG  ++F++ T +  LE+++N  ++VQ ET+
Sbjct: 473 AYQALETREQLWYLPDGRTLRSVITPNPQGGVTYLFDDTTERFHLESRFNAAIRVQSETL 532

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D L EGVAVFG DGR+KL NPAF +LWK E   L    HI  +A+ C+    E   WD  
Sbjct: 533 DTLQEGVAVFGSDGRLKLFNPAFAALWKLEPEALGGEPHIDKVASLCAPLLVEQTAWDNL 592

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             ++    DER  L+  L     SVL+Y+  PLP+  T++TF+++T SV  ERALTE+N+
Sbjct: 593 RTVVAGLLDERLGLENRLTRQDGSVLDYAAAPLPDGATLITFIDMTASVNVERALTERNQ 652

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           AL  A++++N FV HVSYELRSPLTNIIGF ++L    +G LN KQ +Y+ Y+ ASS+ L
Sbjct: 653 ALLDAEKLRNDFVHHVSYELRSPLTNIIGFIEMLGEGAVGPLNEKQHEYIGYVMASSSAL 712

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             ++NDILDLA++DA  M L+   + + + +    + +  ++ E+ + + V +   +G F
Sbjct: 713 RAIINDILDLASIDADAMDLSLEEVDIAEAMRAAAEGVRDRLRESTLTLAVDAAPDIGVF 772

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +AD +R+ QI   +LSNA+ FS+ G TV L A+R + + IF V + G  IP+DM + VF+
Sbjct: 773 LADGKRIRQILFNLLSNAIGFSTPGQTVTLAASRSHDEVIFKVIDEGCGIPDDMVEHVFD 832

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF ++A     RGVGLGLSIV SF+ LHGG V I +     TT+ C  PS+
Sbjct: 833 RFKTHAGGSNHRGVGLGLSIVRSFVQLHGGRVLIETKLGKGTTMTCIFPSR 883


>gi|240141281|ref|YP_002965761.1| putative histidine kinase, putative HK, ATPase and Sensor Domain
           [Methylobacterium extorquens AM1]
 gi|254563790|ref|YP_003070885.1| histidine kinase [Methylobacterium extorquens DM4]
 gi|240011258|gb|ACS42484.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain
           [Methylobacterium extorquens AM1]
 gi|254271068|emb|CAX27075.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain
           [Methylobacterium extorquens DM4]
          Length = 847

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/800 (31%), Positives = 409/800 (51%), Gaps = 27/800 (3%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75
           +  + +  +A    + G++L   I  ++ +R+R    +K       L+ +     +   L
Sbjct: 38  LGAMQTHNVAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAHLRGAHDRAEML 97

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD------------------TDLLSFEN 117
           L     + + W G+ E P I+G      D+   D                    LL+F  
Sbjct: 98  LHSERQVLVAWAGRGE-PSIVGDAGFAQDLRNQDLRNQDLRGQDSRGLQGGSRHLLAFGT 156

Query: 118 WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
           WL       L  A   LR+ G  F +   +     I+ +G+  G  A LR+        E
Sbjct: 157 WLAPQDAQLLDSAVATLRERGTGFRMNLRSLAGRYIEAQGQAVGGRALLRLRETTDERRE 216

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           L E     ++    +S    L D+L   +WHR   G + + N         E    + A+
Sbjct: 217 LIELRHTLEEAKRGLSALAGLLDALPQPIWHRSPDGALAFVNA--AYAAAVEAPSREAAL 274

Query: 238 GESRKLFKEEIKKRMISSSALEK--NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
               +L     +++++  +           +S +  G  ++  +       G  GIA+DV
Sbjct: 275 SHGLELLDRSAREQIVRQARRPGLPAQALRLSAVVAGARRTLDVSESTLEAGRVGIAVDV 334

Query: 296 SKEITVN----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           S+  +V      Q+      L  L  A+A+FD  + L FHN ++  LW++D AFL   P 
Sbjct: 335 SELESVRADLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPL 394

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
           + E+L+ LR+A KLPEQ ++++WK ++ + Y++ E     W+LP+G+TL V+   NP+GG
Sbjct: 395 DGEILDRLRAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGG 454

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             +++ +++  + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N AF + W+ + 
Sbjct: 455 LTYLYHDVSESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDP 514

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L+   H+  + A C     +   W      +T   + R      L++   +VL+ S  
Sbjct: 515 ATLAGKPHVDAVIAACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQ 574

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           PLP   T+LTF++VT S   ERALTEKN+AL +A +++++FV HVSYELRSPLTNIIGFT
Sbjct: 575 PLPLGATLLTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFT 634

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL    +G+LN +Q +Y E+I  SS  LL ++NDILDLA++DAG ++L   TI +   +
Sbjct: 635 QLLGDETVGALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATV 694

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
               + I  ++ E++I + +     +GS  AD +R+ QI   +LSNA+ FS+ G  V ++
Sbjct: 695 EAAVRGIEDRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVE 754

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           A R+  +   +V + G  I  ++   VF+RF SN    + RGVGLGLSIV SF+ LHGG 
Sbjct: 755 ARREGRELRLTVTDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGR 814

Query: 772 VSISSSDEGVTTINCRIPSK 791
           V I S+    T + C  P +
Sbjct: 815 VEIHSAPGTGTRVTCLFPVE 834


>gi|217976854|ref|YP_002361001.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217502230|gb|ACK49639.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 859

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/777 (31%), Positives = 408/777 (52%), Gaps = 16/777 (2%)

Query: 28  GTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD 87
             + G++L         +      A +  +     + +  +L +   LL  +  + +VW 
Sbjct: 69  ALVIGLILFAGAAAFATVAAHRRWAGREADLTGEAARLRARLDRAELLLAASAGIIVVWR 128

Query: 88  GKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAET 147
           G D+ PE+ G L    + PQ     L+F +WL      +L      LR  G +F     T
Sbjct: 129 GADDQPEVEGDLALLAEDPQRRLP-LAFGSWLVAASAQELGVRVADLRARGAAFRAAVAT 187

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
            +   + +EGR     A +RI  +     E         +    +     + D+     W
Sbjct: 188 LDGRHLDVEGRPLDGVAVMRIRDVSAERMEAIRLQELEARAKGELKALWAMLDASPNPAW 247

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
            RD  G +   N +Y +  E       +A+  + +L ++  ++    + A    +     
Sbjct: 248 LRDGEGRLTLVNSAYARAVEAADPD--EAVARNVELLEKPAREASREARATGAVWRGRAP 305

Query: 268 TLEHGNNKSYKIVRVLNSFGEA---------GIAIDVSK----EITVNDQLTHTYEILHN 314
            +  G  + + ++   +    A         G+A DV++       +  +       L  
Sbjct: 306 AVVVGERRLFDVIDAPSGEAVAAGSAAPASVGMASDVTELQGARDALEREKQAHARTLDQ 365

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           L+ A+ IFD ++ L FHN ++ +LW +D A+L   P++ E+L+ LR+A  +PEQ +++ W
Sbjct: 366 LSTAVVIFDHSKRLVFHNAAYRQLWGLDQAWLDEKPTDSEILDRLRAARLIPEQTDFRVW 425

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           KE + + Y+S ET +  W+LP+ +TL +++  NP+GG  ++++++T +  LE+++N  ++
Sbjct: 426 KEGLLAAYQSIETEEQAWYLPDERTLRIVINPNPQGGVTYLYDDVTERFRLESQFNAAIR 485

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           VQ ET+D L EGVAVFG DGR+KL NPAF  LW  + ++L    HI  +A  C+  + + 
Sbjct: 486 VQSETLDTLKEGVAVFGSDGRLKLFNPAFAELWSLDPDQLGDQPHIDRVAELCAPLFMQE 545

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             W+   A++    D+R   +  L     +VL+ +  PLP+  T++TF++ T  V  ERA
Sbjct: 546 GDWNELRAVVAGLQDQRLGYENRLARRDGAVLDCAAAPLPDGATLITFIDATAGVNVERA 605

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LTE+N+AL +A+ ++N FV HVSYELRSPLTNIIGF  LL    +G LN +Q +Y  Y++
Sbjct: 606 LTERNQALIEAERLRNDFVHHVSYELRSPLTNIIGFIQLLGDPSVGPLNPRQLEYAGYVT 665

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS+ LL ++NDILDLA++DA  M+L+   I + + +    + +  ++ E  + + VI  
Sbjct: 666 KSSSALLAIINDILDLASIDADAMELSLEEIDVAETMRAAAEGLEDRVAEAGLTLSVIPM 725

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             LG F+AD +R+ QI   +LSNA+ FS+ GS + L A R   + +F V + G  IP ++
Sbjct: 726 QDLGFFIADGKRIRQILMNLLSNAIGFSAPGSAIGLAALRRGEEIVFKVSDQGRGIPREV 785

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F+RF ++    + RGVGLGLSI  SF+ LHGG + I S+    TT+ C  P+K
Sbjct: 786 VDHIFDRFKTHTSGSRHRGVGLGLSIARSFVELHGGRILIDSALGEGTTVTCIFPAK 842


>gi|163853828|ref|YP_001641871.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163665433|gb|ABY32800.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 846

 Score =  672 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/800 (31%), Positives = 409/800 (51%), Gaps = 27/800 (3%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSL 75
           +  + +  +A    + G++L   I  ++ +R+R    +K       L+ +     +   L
Sbjct: 38  LGAMQTHNVAGLAVVLGLILFATILSLVYLRERVGWTRKERALQDELAHLRGAHDRAEML 97

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD------------------TDLLSFEN 117
           L     + + W G+ E P I+G      D+   D                    LL+F  
Sbjct: 98  LHSERQVLVAWAGRGE-PSIVGDAGFAQDLRNQDLRNQDLRGQDSRGLQGGSRHLLAFGT 156

Query: 118 WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
           WL       L  A   LR+ G  F +   +     I+ +G+  G  A LR+        E
Sbjct: 157 WLAPQDAQLLDSAVATLRERGTGFRMNLRSLAGRYIEAQGQAVGGRALLRLRETTDERRE 216

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           L E     ++    +S    L D+L   +WHR   G + + N         E    + A+
Sbjct: 217 LIELRHTLEEAKRGLSALASLLDALPQPIWHRSPDGALAFVNA--AYAAAVEAPSREAAL 274

Query: 238 GESRKLFKEEIKKRMISSSALEK--NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
               +L     +++++  +           +S +  G  ++  +       G  GIA+DV
Sbjct: 275 SHGLELLDRSAREQIVRQARRPGLPAQALRLSAVVAGARRTLDVSESTLEAGRVGIAVDV 334

Query: 296 SKEITVN----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           S+  +V      Q+      L  L  A+A+FD  + L FHN ++  LW++D AFL   P 
Sbjct: 335 SELESVRADLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPL 394

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
           + E+L+ LR+A KLPEQ ++++WK ++ + Y++ E     W+LP+G+TL V+   NP+GG
Sbjct: 395 DGEILDRLRAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGG 454

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             +++ +++  + L ++Y+ L+K Q ET++ L E VAVFG DGR+ ++N AF + W+ + 
Sbjct: 455 LTYLYHDVSESMKLASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDP 514

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L+   H+  + A C     +   W      +T   + R      L++   +VL+ S  
Sbjct: 515 ATLAGKPHVDAVIAACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQ 574

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           PLP   T+LTF++VT S   ERALTEKN+AL +A +++++FV HVSYELRSPLTNIIGFT
Sbjct: 575 PLPLGATLLTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFT 634

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL    +G+LN +Q +Y E+I  SS  LL ++NDILDLA++DAG ++L   TI +   +
Sbjct: 635 QLLGDETVGALNERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATV 694

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
               + I  ++ E++I + +     +GS  AD +R+ QI   +LSNA+ FS+ G  V ++
Sbjct: 695 EAAVRGIEDRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVE 754

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           A R+  +   +V + G  I  ++   VF+RF SN    + RGVGLGLSIV SF+ LHGG 
Sbjct: 755 ARREGRELRLTVTDRGRGIAPEVIDRVFDRFESNTLGTKHRGVGLGLSIVRSFVELHGGR 814

Query: 772 VSISSSDEGVTTINCRIPSK 791
           V I S+    T + C  P +
Sbjct: 815 VEIHSAPGTGTRVTCLFPVE 834


>gi|90420581|ref|ZP_01228488.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335309|gb|EAS49062.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 809

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/792 (33%), Positives = 434/792 (54%), Gaps = 22/792 (2%)

Query: 18  TLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLT 77
            L    I     +A ++  +++  + LIRQR + A + +   + L+E   +      LLT
Sbjct: 1   MLGPADILYLALVAMLIGASMLSAVFLIRQRAATATENDMLRASLAESRAEAEARTMLLT 60

Query: 78  ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137
                 +V+ G    PEI+G L      P  +   LSF +W+     ++L  A   LR +
Sbjct: 61  AGEERLLVYSGPGA-PEILGALPGPAGAPVEEKRFLSFGDWMAADVALRLQTAITALRHD 119

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
            + F +  +  +   I+  G+  G  A +R ++L+G+     E  +        I   + 
Sbjct: 120 AEPFSIEIDLPHGRLIEASGKTIGGLAVVRFVALEGLRERAREAEIASADALAMIETMQN 179

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           LF++    VW RD+ G + W N +Y  + + +       +    +   E+ +  + +  +
Sbjct: 180 LFNAAPIPVWLRDRNGRLGWVNNAYAASVDAK--EAADTLERQVEFLSEQDRLTIAARLS 237

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT----YEILH 313
            +  F + +ST+   + +++ +V      G AG+AIDVS+   V  +L  T     E L 
Sbjct: 238 EQAVFSDKLSTVVAADRRNFAVVEATGPLGSAGLAIDVSETEQVRMELRQTINSQSETLD 297

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            LT A+A FD    L +HN +F  L+++  ++L + P +  LL+ LR+   LP +  +++
Sbjct: 298 QLTTAVARFDDKTRLTYHNAAFQRLFDLTNSYLESEPDHLALLDHLRTRGILPVEKLFRS 357

Query: 374 W-KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
             ++   + Y+++E  +  WHL + +TL VI T  P+GG  W+FE++T ++DLE++    
Sbjct: 358 EIQDQDLAAYRATEPTETMWHLADARTLRVIATPQPQGGATWIFEDITEKLDLESQVKAT 417

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           V++Q ETID+LSE VAVFG DGR++LSNP+F  L+  + + L     I  ++   S    
Sbjct: 418 VQLQRETIDYLSEAVAVFGSDGRLRLSNPSFAELFGLKPDYLLSRPRIHTLSDLASVAIR 477

Query: 493 ES-------------DGWDLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSIIPLPNAQT 538
            +              GW LF   +T+FD+ R+  + G + L S   + ++I+PLPN QT
Sbjct: 478 RTISSADTDGTASAVGGWPLFCQSVTAFDETRRDTETGEMILSSGRTIAFAIVPLPNGQT 537

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           MLTF +++D+ +AER L EKNEAL +A++IKN FVQHV+YELRSPLTNIIGF+ LL++++
Sbjct: 538 MLTFSDISDARQAERMLREKNEALEQANQIKNDFVQHVNYELRSPLTNIIGFSALLRSTE 597

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G LN +QS+Y++YI+ S++ LL +VNDILDLATVDAGIM+L+ S + +   +      I
Sbjct: 598 TGPLNERQSEYLDYIAVSTSSLLTIVNDILDLATVDAGIMELDLSEVDIVSTVEHAADGI 657

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++ E  + +++       +F+AD  RL QI   +LSNA +F+  G+ V + A R    
Sbjct: 658 RERLEEAEVTLRIDLAKAGETFMADSHRLTQILFNLLSNAANFAPAGTAVDVVATRGPRA 717

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F+V + G  IP D    VF RF SN   G+  G GLGLSIV+SF+ LH G + I S+ 
Sbjct: 718 ISFAVTDRGPGIPADQIDRVFERFESNPAGGRHSGAGLGLSIVKSFVELHRGTICIQSAP 777

Query: 779 EGVTTINCRIPS 790
           +  TT+ C  P 
Sbjct: 778 DEGTTVICDFPL 789


>gi|121602765|ref|YP_989601.1| sensor histidine kinase [Bartonella bacilliformis KC583]
 gi|120614942|gb|ABM45543.1| sensor histidine kinase [Bartonella bacilliformis KC583]
          Length = 824

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/788 (35%), Positives = 427/788 (54%), Gaps = 42/788 (5%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+ G+I+   L T I +I+ I  + +  K +    +  SE   +L +Y  LL E     
Sbjct: 43  LALCGSISCASLLTCITVIINI--KKNAEKSLQVIQANFSE---KLKQYEWLLEETEQYL 97

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           ++W+     P I+G + +       + +   FE+WL+     +L +A  +LR  G SF+L
Sbjct: 98  LIWEHPTALPHIVGNISKLQKAGINEQNFQCFEDWLEESFLQQLDQALTQLRCHGCSFEL 157

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T N  A+++ G ++G+ A  R        SE         ++   + + + L D + 
Sbjct: 158 SITTINKIALQVTGVIAGTAAIARFQDFSKQQSENIRLREDMTRMLTELKIQRNLLDYIQ 217

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS-------- 255
             VW R+  G I + N +++  T      FQ+        F E I+ ++           
Sbjct: 218 EPVWIRNSEGKICFVNNAFRDMTN-----FQEGCDTITDPFNETIQFQINKGNQINERSQ 272

Query: 256 -------SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ---- 304
                     +  F + V T+ +G  + + + R+    G A  A D S    + ++    
Sbjct: 273 TNGTNQLDETKTVFQKHVHTVVNGERRHFHLTRITTEEGMAAFARDDSAYKNLTNEMEQI 332

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L   +E L  ++ A+AIFD N+ L+F N +F  LW ++ +FL + PS+  LLE LR    
Sbjct: 333 LQSHHETLDQISTAVAIFDSNQKLKFCNHAFRILWPLESSFLESEPSHTLLLERLREKGF 392

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
           + E  +W+ WKE + + +   E++   W+LPNG T+ V+   +P+GG  W++ENLT ++D
Sbjct: 393 IGEHPDWRAWKEELLTSHHQIESNPKIWNLPNGCTVRVMSRPHPQGGITWLYENLTEKID 452

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           LE +YNTL+K+QGET+D LSEGV VFG DGR+ LSNPA   LW    N L  GTHI  + 
Sbjct: 453 LERRYNTLIKIQGETLDKLSEGVVVFGTDGRLCLSNPALSKLWSLPYNLLVEGTHITQLQ 512

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
             CS      + W  F  +IT F ++R +  G ++L +  +++Y+ +PLPN QTMLTFVN
Sbjct: 513 THCSAL-TVGEEWKQFTQLITGFAEKRDARSGRIDLRNGMIIDYTFVPLPNGQTMLTFVN 571

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VTD+V   RAL EKNEAL   D ++N FVQHVSYELR+PLTNIIGF+D+L+    GSLN 
Sbjct: 572 VTDTVHIARALQEKNEALESTDRLRNEFVQHVSYELRTPLTNIIGFSDILRDQMFGSLNE 631

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +Y+ +I + S  LLNLVNDILDLAT+DAGIM+LN  ++ + D + +    I   ++ 
Sbjct: 632 RQHEYLGHIQSESNTLLNLVNDILDLATLDAGIMELNIQSVNIVDAMAQAVTRIEEHLNG 691

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +I         L    AD  RL QIF  +LSNA++F+ + ST+   A + +   +FSV 
Sbjct: 692 RHILFSQHISPSLDVIFADATRLHQIFVNVLSNAVNFAPEASTIEFCAHKQDNHIVFSVH 751

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           N GS IP D+   +F RF S+AH       G         S+V+SF+ LHGG+V I +  
Sbjct: 752 NEGSDIPSDILDRIFKRFSSHAHHGGRAGAGLGL------SLVKSFVELHGGYVEILTGT 805

Query: 779 EGVTTINC 786
              TT+ C
Sbjct: 806 GQGTTVKC 813


>gi|170747176|ref|YP_001753436.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653698|gb|ACB22753.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 862

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/781 (31%), Positives = 412/781 (52%), Gaps = 16/781 (2%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
             +A      G++   +I  +L + +R    ++  E  + L  +     +   LL     
Sbjct: 41  HSVAALAIFGGLVAFAVILSLLHLYERGRWTRRERELAATLDVLRGAHDRAEMLLNAERQ 100

Query: 82  LTIVWDGKDETPEIIGQLH----QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137
           + + WD + E P + G +                +L+F  WL       +  A E LR  
Sbjct: 101 IIVTWDQRSE-PVVEGDISLAIHGERPTSGYARRVLAFGTWLVPADATAVETAVETLRAR 159

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           G  F L   +Q   +I+  G+     A LR+        E+A+      +    +S    
Sbjct: 160 GTGFALSLRSQTGRSIEAHGQAVAGRALLRLRETSQERCEIADLRAALDETRRGLSALSG 219

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           L D++   VW R++ G + W N         E    + A+    +LF    ++ +    A
Sbjct: 220 LLDAIPQPVWRRNRDGGLSWVNA--AYVAAVEAESREAALDAGLELFDRPARETIAREEA 277

Query: 258 LE----KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN----DQLTHTY 309
                       +S +  GN +   +       G  GIAIDVS+  +V      Q+    
Sbjct: 278 ARFAGLTRSVPRLSAIVAGNRRMLDVFETGLETGRVGIAIDVSELESVRADLQRQMNANV 337

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
             L  L  A+A+FD ++ L FHN ++ +LW++D AFL + PS+ E+L+ LR+  KL E  
Sbjct: 338 RTLDQLPTAVAMFDVSQRLIFHNAAYRQLWDLDQAFLDSRPSDGEILDHLRAERKLEEHA 397

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           +++ WK+ + S Y+++E ++  W+LP+G+TL V+   NP+GG  ++F++++ +++ E++Y
Sbjct: 398 DFRGWKQGVLSAYRAAEANQTWWYLPDGRTLRVVADPNPQGGLTYLFDDVSDRLNAESRY 457

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           N L ++Q ET+D L+E VAVFG DGR+ L+N AF ++W+ +   +    H+  + A C  
Sbjct: 458 NALRRLQAETLDTLAEPVAVFGADGRLSLANRAFFTVWRLDPEMVEERPHVDAVIAACRA 517

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                + W      +   +  R +    LE++  +VL+ +  PLP   T+LT ++VT SV
Sbjct: 518 LAPAEEPWLDIRDAVVGLE-ARTARTCRLEVVDGTVLDCAAQPLPEGATLLTLIDVTASV 576

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             ERALTEKN+AL KA +++++FV HVSYELRSPLTNIIGFT LL    +G+LN +Q +Y
Sbjct: 577 NVERALTEKNDALEKAAQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETVGALNERQREY 636

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++I  SS  LL ++NDILDLA++DAG ++L    + +   +    + I  ++ E++I +
Sbjct: 637 ADHIMRSSAALLVIINDILDLASIDAGSLELQREEVDVQATVEAAVRGIEDRLAESHITL 696

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +     +GS  AD +R+ QI   +LSNA+ FS  G  V ++A R   + + SV+++G  
Sbjct: 697 ALDVPEDIGSVHADGKRVRQILFNLLSNAVGFSDAGQRVEVQARRTAQELLLSVRDHGRG 756

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +P ++  SVFNRF S+    + RGVGLGLSIV SF+ LHGG V + ++    T + C  P
Sbjct: 757 MPPEIADSVFNRFESHTLGTRHRGVGLGLSIVRSFVELHGGRVLLETAPGSGTRVTCTFP 816

Query: 790 S 790
           +
Sbjct: 817 T 817


>gi|163867336|ref|YP_001608530.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476]
 gi|161016977|emb|CAK00535.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476]
          Length = 821

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/777 (35%), Positives = 437/777 (56%), Gaps = 30/777 (3%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +A+ G I+   + + + +I+    + ++ K +   ++ LSE   +L  Y  LL E   L 
Sbjct: 58  LALCGGISCASILSCVVVIMH--AKKAVQKPLKTVHADLSE---KLKYYEWLLEETEQLL 112

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
           ++W+     P ++G L     I     +   FE W++ +   +L  A  +LR +   F+L
Sbjct: 113 LIWENPTTLPRVVGTLSTLQKIGIDQQNFQRFELWVEENSLRELDYALTQLRCKCHPFEL 172

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T N   +++ G ++G+ A  R   +    SE A        L   + + + L D + 
Sbjct: 173 SITTTNHVLLQVTGVIAGTVAIARFQDISKQQSENARLQKDIAHLLTELRMQRNLLDLIQ 232

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             VW +D  G + + N ++++  +     +++   E   LF E  +     +   E  F 
Sbjct: 233 EPVWIKDCKGKVCFINRAFREMID-----YREGSDEVGDLFNENTQ---CKTDETETIFQ 284

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAI 319
           E V T+  G  + + + R+  + G A  A D S    +  +L +      E L  ++ A+
Sbjct: 285 EHVHTVIDGERRRFHLTRITTAEGMAAFARDDSAYENLAHELRYILQSHCETLDQISTAV 344

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AIFD N+ L+F N +F  LW ++ +FL + PS+   LE LR    + E  +W+ WKE +F
Sbjct: 345 AIFDTNQKLKFCNHAFKILWPLESSFLESEPSHTLFLERLREKGLIAEHPDWRAWKEELF 404

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y+  E+++  W+LP+G+T+ V+   +P+GG  W++ENLT ++DLE +YNTL+K+QGET
Sbjct: 405 KAYRQMESNQQIWNLPDGRTVRVVSNPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGET 464

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D LSEGV VFG DGR++LSNPA   LW    N L  GTHI  + + CS        WD 
Sbjct: 465 LDKLSEGVVVFGMDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQSHCSAL-TLGQEWDK 523

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F   IT F ++R++  G ++L +D +++Y+++PLP+ QTMLTFVNVTD+V   RAL E+N
Sbjct: 524 FTKFITGFAEKRETYSGRIDLKNDMIIDYTLVPLPDGQTMLTFVNVTDTVHVARALQERN 583

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL  AD ++N FVQHVSYELR+PLTNIIGF+D+L+    GS+N +Q +Y+ +I + S  
Sbjct: 584 EALESADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSINERQQEYLGHIHSESGT 643

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN+VNDILDLAT+DAGIM+L+   + + D + +    +  +++  +I +       L S
Sbjct: 644 LLNIVNDILDLATLDAGIMELDIKPVNIADAMIQAVARVEDRLNGRHITLLQQISPSLNS 703

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD +RL QIF  +LSNA++F+++ ST+       + + +FSV N GS IPED+   +F
Sbjct: 704 ISADEKRLHQIFVNVLSNALNFATEASTIEFCVDEQDDNIVFSVHNEGSDIPEDILDRIF 763

Query: 740 NRFVSNAH------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF S++H       G         S+V+SF+ LHGG+V I +     TT+ C  P 
Sbjct: 764 KRFSSHSHHGGRAGAGLGL------SLVKSFVELHGGYVEILTGSGKGTTVKCFFPL 814


>gi|154250574|ref|YP_001411398.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154154524|gb|ABS61741.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 861

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/773 (31%), Positives = 413/773 (53%), Gaps = 15/773 (1%)

Query: 32  GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD- 90
           G+     +  I  +R   +  +   E  + L  +  +L    ++L        +W  +  
Sbjct: 71  GIAFAGSLAAITGLRASRAARRVALEREASLGVLQARLDAAEAILAAEPDAVFIWTPETL 130

Query: 91  --------ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFD 142
                     P I+G     +D    D D       L+  +  +L+ A ++LR  G  F 
Sbjct: 131 RAAPGTFQARPRIVGSTATLVDPSSGDLDFSYLLTRLEPENAGRLNTAVQRLRTRGARFS 190

Query: 143 LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
           L  ++ +    + EGR +G+ A L +  + G  +E++    + ++     + F+    S 
Sbjct: 191 LHVQSTDGRTFEAEGRPAGALAVLWLRDVTGERAEVSRLKERLRQAEFARARFEEHIGSA 250

Query: 203 DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
            F  W R   G ++W N         +    + A+    +L  EE    +          
Sbjct: 251 PFPAWRRGDDGALVWVNA--AYARAVDAASPEDAVTRGLELLNEETLSSLRRGLFDRSRA 308

Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVA 318
                 +  G  ++  IV      G +GIAIDVS       +L    E     L  +T A
Sbjct: 309 RARSHAIMAGERRALDIVEQRLGDGVSGIAIDVSDLDAAEAELRRHIESHAATLDRVTTA 368

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           +AI   ++ L F NR+F  LW +D  +L   PS+ E+L+ LR+  +LPEQ N++ WK+  
Sbjct: 369 VAICGPDKRLTFRNRAFETLWGLDPHWLDGGPSDGEILDELRARRRLPEQANFQAWKQTR 428

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
             +Y+S++   + WHLP+G+T+ ++  ++P GG I+++EN+T +++LE+ YNTL +VQ E
Sbjct: 429 MEIYRSTDPVDEYWHLPDGRTIKLLAQAHPFGGVIYLYENVTERLNLESSYNTLARVQRE 488

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           TIDHL EGVAVFG DGR+KL NPA+ ++W   + +LS   H+  +   C     +   WD
Sbjct: 489 TIDHLYEGVAVFGSDGRLKLYNPAYANIWNLADEQLSGEPHVNELVEMCRPLLADEAEWD 548

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                +T+    R  + G L+    +V++Y+ +PLP+  T++T+V+VTDS R E+AL ++
Sbjct: 549 TLKNGVTNMSGIRTQITGRLDRPDGTVVDYAQVPLPDGATLMTYVDVTDSTRMEQALRDR 608

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+AL  AD +K+ F+ HVSY+LR+PLTNI+GF ++L+T   G L+ +Q +Y++ I  SS 
Sbjct: 609 NDALETADRLKSEFISHVSYQLRTPLTNILGFGEILETEMFGPLSPRQHEYMQGILESSE 668

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L+++VNDILDLA ++AG M L+ S + L++++   ++       +N + ++V     +G
Sbjct: 669 TLIDVVNDILDLAVIEAGAMTLDLSDVELSEVIYATEEFAQRPAQKNKVTLRVECPKDIG 728

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD +R+ QI   +LSN++ F+S G T+++ AAR +      V++ G  I  +   +V
Sbjct: 729 IVRADEKRIKQIMINLLSNSLAFTSPGDTIVIGAARRDNSVELYVEDTGDGIKPEFQSNV 788

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+RF +++   +RRG GLGLS+V SF+ LHGG V++ S+ +  T + C +P +
Sbjct: 789 FDRFEAHSSSDRRRGAGLGLSLVRSFVELHGGWVTLESAPDVGTRVTCHLPVR 841


>gi|296446569|ref|ZP_06888511.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255923|gb|EFH03008.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 848

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/778 (31%), Positives = 395/778 (50%), Gaps = 12/778 (1%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           S + A      G++L + +  +  + +R   ++      + L     +L +  + L    
Sbjct: 58  SGEFANLALSLGLVLFSSVVALAHLTERKRWSRGQARLAAELEAARSKLDRAETFLASEP 117

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
            L + WDG    P++   L       +     L+F  WL      +L +    LR+ G+ 
Sbjct: 118 QLLVSWDGAASEPDVENSLGDAAFARRP----LAFGTWLTMKDARELEERIGWLRQSGEG 173

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           F L   +      + EGR     A LRI  + G   EL     +  +          + +
Sbjct: 174 FRLAVASPQGRRFEAEGRAVAGRAVLRIREVSGDRLELLSLRERHARCVAEAEGLHAMLE 233

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           +L   VW R   G + + N         E      A+    +L   + +     +   ++
Sbjct: 234 ALPTPVWMRSADGRLSFVNA--AYAAAVEAESPADALRRQIELIDHQARAEATVARTRDE 291

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN----DQLTHTYEILHNLT 316
            F   V+ +  G      +V        A +A+D  +   +      Q+      +  L 
Sbjct: 292 VFRARVTAVVAGERHGLDVVEAPFHGASAALALDRHEIDAMRSDLEQQMQAHARTMDQLP 351

Query: 317 VAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           +A+AIFD+ + L + N ++  LW  +D AFL   PS+ ++L+ LR+  +LP + ++K WK
Sbjct: 352 IAVAIFDRRKRLVYRNAAYERLWPPLDRAFLDQGPSDSQILDRLRAEQRLPVETDYKAWK 411

Query: 376 ENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
             +   Y+SSE H +  WH+P+G+TL V+V  NP+GG  +++++++ +  LET+++ L +
Sbjct: 412 SRLLEAYRSSEEHHEHIWHMPDGRTLRVVVNVNPQGGVTYLYDDVSERYFLETRFHALDR 471

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +Q ET+++L EGVAVFG DGR++  NPAF +LW+ +++ L        +A  C++ +   
Sbjct: 472 MQNETLENLREGVAVFGADGRLRFCNPAFVALWRLDKHALDEKPRFDAVAGLCAKLHANE 531

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           D W      +T   + RK     +     SVL+ +   LP    +LTFV+VT  V  ERA
Sbjct: 532 DTWSELRGFVTGLQEMRKGFTRRIARSDGSVLDCTAQTLPEGAALLTFVDVTAGVNVERA 591

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LTE+NEAL  A++I+N FV HVSYELRSPL NIIGF+ LL     G LN+KQ +Y+ Y+ 
Sbjct: 592 LTERNEALIAAEKIRNDFVHHVSYELRSPLNNIIGFSHLLGEKSTGELNAKQLEYLSYVG 651

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL ++NDILDLAT+D+  M L    + + D +    + +  ++ EN I +K+++ 
Sbjct: 652 KSSAALLAIINDILDLATIDSDAMALELGDVDVEDAMRAAAEGVQDRLAENTIELKIVAT 711

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G +G F  D +R+ QI   +LSNA+ FS  G T+ L A R  G+ +  V + G  I  + 
Sbjct: 712 GDVGCFRGDAKRIRQILFNLLSNAIGFSRPGQTITLAALRREGEIVLKVADRGRGIAPEA 771

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + VF+RF S+    + RGVGLGLSIV +F  LHGG V I S+    TT+ C  P+ E
Sbjct: 772 LEKVFDRFESHTAGSRHRGVGLGLSIVRAFTELHGGRVLIDSALGEGTTVTCIFPTDE 829


>gi|312114352|ref|YP_004011948.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219481|gb|ADP70849.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 875

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/787 (30%), Positives = 402/787 (51%), Gaps = 9/787 (1%)

Query: 9   GIGKGIEICTLFSCK--IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEIC 66
                +     F     + +   I G+ +   +   +   Q    AK++      L  + 
Sbjct: 68  AASDAVPATCPFGSADLLLIVALIGGVAVAFGVLAFVFREQSRYRAKQLLRQNGRLDALF 127

Query: 67  DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK 126
                + +L      + ++W         +  +   I +P     LL F +WL       
Sbjct: 128 TIEGNFRALAALEPQVFVIWSDNHAR-LALHTMQGTIGVPSKLAQLLRFGSWLHPDDASL 186

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
            ++   +L+  G+ F   A T     I+I G VSG+   LRI +   +  EL       K
Sbjct: 187 TAENLARLQSRGEGFVSNASTLEGHVIEIAGAVSGADTVLRIRAFSPVNKELVRLIGDNK 246

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
           +L   I   + + D+L   VW RD  G + W N +Y    + +    ++AI +  +LF+ 
Sbjct: 247 RLKQAIQDREGILDALQTPVWLRDAKGALTWVNTAYVTAIDAKS--REEAIDKQIELFET 304

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
             +  +   S   K     + T+ +G  ++Y+ +      G  G A+DVS   T  D+L 
Sbjct: 305 RQRTDLHRMSQSRKPGRIKLQTIVNGCVQTYEAITAPIERGSGGAALDVSMLKTQRDELE 364

Query: 307 H----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                    L  ++  +A+F  +R L + N +F ++WE+++A+LA  P+  E  + LR  
Sbjct: 365 RQIAANARTLDKVSTGVAVFGVDRSLFYCNDAFAKIWELEIAWLAAKPAASEFFDQLRQR 424

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             LPEQ +++ W++     +  + T  + WHLP+G+T+HV+      GG  ++F+++T +
Sbjct: 425 RLLPEQPDYRKWRDGKIIAFDRNRTLDEFWHLPDGRTVHVVKDCRDDGGLTFLFDDVTEK 484

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + LE +++TL++ Q ET+DHL+EG+AVFG DGR+ L NP+++S+W   E+ L    H  +
Sbjct: 485 LALERQFHTLIEGQRETLDHLNEGIAVFGADGRLDLYNPSYQSIWALPEDMLGDQPHFED 544

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           I         + D W      IT   + R +  GT+     + L Y + PLP+  T++TF
Sbjct: 545 IRKASDMLAPDPDFWHTLRESITGMPEARDTFSGTVAKSDGAHLAYVVTPLPDGGTLVTF 604

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VTD  R E  L E+NEAL  +D +K +F+ HVSYELR+PLT IIGFTD+L     G+L
Sbjct: 605 ADVTDRKRFEEVLLERNEALEASDRLKTAFLSHVSYELRTPLTTIIGFTDMLAEPAFGAL 664

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N+KQ +Y+++I  SS +LLN++NDI+DLA +DAG + L  + + +  L+   +  +  ++
Sbjct: 665 NNKQREYLDHIKTSSEVLLNIINDIIDLAALDAGALDLKLAPVEIESLIEAAELGVRERL 724

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              N+ + V      G+ +AD  RL+Q+   +LSNA+ FS +  T+ L   R+      S
Sbjct: 725 SRANVNLDVHIASGAGTVMADANRLIQVLYNLLSNAIGFSPEDGTITLACRREKNGVAIS 784

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G  IPE+   +VF+RF S +   + RG GLGL++V+S + LH G + + S+    T
Sbjct: 785 VQDTGLGIPEEEQATVFDRFESRSKGSRHRGAGLGLTLVKSIVELHKGRIDLRSTPGAGT 844

Query: 783 TINCRIP 789
           T+   +P
Sbjct: 845 TVTVFLP 851


>gi|114568634|ref|YP_755314.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339096|gb|ABI64376.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 829

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 223/800 (27%), Positives = 379/800 (47%), Gaps = 40/800 (5%)

Query: 23  KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL 82
           +        G +   +   I   +Q              ++++ D++++  S+   +  L
Sbjct: 7   QFVTLAVTIGAVAFAVAVGIWAFKQTAGARGAQALWRRKMADLEDRVARADSVFGAHPGL 66

Query: 83  TIVWDGKD--------ETPEIIGQ------LHQRIDIPQTDTDLLSFENWLKFHHYIK-- 126
            +VWD             P I G       L +  +  +           L  +      
Sbjct: 67  VLVWDQPPVDSADTSWGAPRIFGSSVALASLLRFAEANEGPNPAGILMEGLADYEARSAG 126

Query: 127 -----LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS--LDGIYSELA 179
                L +    L ++GQ F L     +   ++++GR +G+   + +    + G+    A
Sbjct: 127 GEETTLRRRFGDLSEKGQPFSLTILGPSGRFLEVDGRAAGTQLVVWLSDATIRGLEESGA 186

Query: 180 ETTLKCKK--LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
              ++  +  +S     F  +        W  +  G I WAN +Y +  E + +    A+
Sbjct: 187 RGRIEEARRLVSKDPLAFLDMLGRAPVPAWRMNATGRIEWANQAYVEAVEGDAV---DAV 243

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
            E + L    +      ++   +   E    +  G+ +  K +    S G AG A+DV+ 
Sbjct: 244 IEKQTLLDAAMTDLASRATIAGEPVDEMRIVVIDGSRRGLKFLVFPVSGGAAGFALDVTD 303

Query: 298 EITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
                  L        + L+++  A+ +FD+++ L FHN++F  L+++D A+L   P + 
Sbjct: 304 GEEAKAALARFRRAHDDTLNHMAEAVVVFDRSKRLNFHNKAFSNLFKLDDAWLNERPGHG 363

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSS---ETHKDTWHLPNGQTLHVIVTSNPRG 410
           + L+ +R    LPEQ ++  WK +  + Y +    ET  + W LP+G+TL V    +P G
Sbjct: 364 QFLDRMREKRLLPEQADFGAWKTDELARYDAPPSEETPDELWPLPDGRTLRVARQRHPLG 423

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G + +FE+ T ++ L  +YNTL+ VQ  T+D L E VAVFG +GR++L+N AF  LW  +
Sbjct: 424 GLMLIFEDKTDELALRARYNTLINVQRATLDKLHEAVAVFGANGRLQLNNSAFEDLWGFD 483

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYS 529
              L        ++ TC+  + +   W    A +T    + RK + G +  L   VL Y 
Sbjct: 484 AEELDGQPDFDAVSETCAALFTDDRVWTDIKARVTDPSPQARKQVTGEMRRLDGRVLTYL 543

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             PLP+  T++ + +VTDS R E AL E+ EAL  ++ IK  FV+HVSY+LR+PLT I G
Sbjct: 544 TRPLPDGATLICWDDVTDSRRIEEALRERAEALETSERIKTEFVEHVSYQLRTPLTTIGG 603

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           + D+L     G L+ +Q + +  I +++  L  L++DILD+A +DAG ++L    + L D
Sbjct: 604 YADMLAQGFAGELSDRQKEPMSAIQSAAAHLAKLIDDILDVAAIDAGQLELELGDVDLGD 663

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +  E    +A +   + I++ V  +  LG   ADR RL Q+   +LSNA+   + G  V 
Sbjct: 664 VAREAADLVAARADHHAIKLDVDIEDGLGLLRADRNRLKQVSMNLLSNAIRHVATGGAVT 723

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           + A R+  D    VK++G  I  +   SVF+RF      G+R G GLGLS+V+    LHG
Sbjct: 724 IGARRNGEDITLWVKDDGEGIAPEKQASVFDRFAR----GERGGAGLGLSLVKEIAELHG 779

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G V + S  E  T ++C +P
Sbjct: 780 GWVELQSEPERGTLVSCHLP 799


>gi|209965987|ref|YP_002298902.1| sensor protein divL [Rhodospirillum centenum SW]
 gi|209959453|gb|ACJ00090.1| sensor protein divL [Rhodospirillum centenum SW]
          Length = 821

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 219/752 (29%), Positives = 364/752 (48%), Gaps = 22/752 (2%)

Query: 56  NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
               +       ++    +L+  +      W           +  + + IP+    L   
Sbjct: 60  EADRADALRAEGEVRNLRALVAASPDPWCAWSTGGAQAA-SPRFAEALAIPE-VRRLEDV 117

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVA-ETQNDCAIKIEGRVSGSCA-----FLRIL 169
           E  L       L  +   L++ G  F L           ++ GR +G+        L + 
Sbjct: 118 ETALAPSDAAALHGSFRHLQETGAPFLLTVCRADGGRVFQLAGRRAGTDDGEHFDLLWLR 177

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            +    ++LA       +         +  D++   VW R     I+W N ++ +  +  
Sbjct: 178 DITATAADLARGVEARNRAEEECRRLSLALDTVPVPVWLRGSDLSIVWCNRAFARLLDA- 236

Query: 230 GIVFQKAIGESRKL----FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-- 283
               +  +    +L         ++  + +        E+   +  G+ + +++  +   
Sbjct: 237 --APRAVVDLGLELPGGALTLPPRELAMRARNGAHAETESRYLVVDGDRRLFRLTEMPLD 294

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
               + G  +D++ E  + D+L        E+L  L  AIAIF  +  L+F+NR++ +LW
Sbjct: 295 RPDLQLGFGLDITGEQEIADELERHVSAHAEVLEQLGSAIAIFGADTRLRFYNRAYAQLW 354

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQ 398
            +D  +L + P   ELLE +R+  KL EQ+++  WK    + + S  E  ++  HLP+G+
Sbjct: 355 GLDEVWLDSEPGYGELLEDMRARRKLTEQVDFPRWKRQRLAQFTSLLEPEEEMIHLPDGR 414

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           TL  +   +P GG +++ E++T  + LET YNTL+ VQ ET+D+L E VAVFG DGR+KL
Sbjct: 415 TLRTLTVPHPFGGLMFVQEDVTHTLALETSYNTLMAVQQETLDNLEEAVAVFGGDGRLKL 474

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPAF  LW+  E  L+   HI  +        +    W    A + +   +R      +
Sbjct: 475 HNPAFLRLWRLSEPDLAGEPHIAALIERVRPLMDVGGDWAARRAELVAGLLDRMPRTSRM 534

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E +  SVL YS +PLP+   + + ++VTDS R E+AL   NEAL  AD +K+ F+ +VSY
Sbjct: 535 ERVDGSVLTYSQVPLPDGAVLFSAMDVTDSARVEQALRATNEALETADRLKSEFIANVSY 594

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +LR+PL  I+GF ++L     G LN +Q +Y   +  +S  LL LVNDILDLAT++AG M
Sbjct: 595 QLRTPLNAIMGFAEILNNQYFGPLNPRQIEYARGVLEASRRLLALVNDILDLATIEAGFM 654

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L  + + +  L+N V         +  + ++      +G+  AD +RL Q    ++SNA
Sbjct: 655 VLERAPVDVAGLVNGVAMLTRDWARQQELDLRTDIPAGIGTLEADEKRLKQALFNLVSNA 714

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + F+  G  +IL A R   + + SV++ G  IP+D  + VF RF    H+ +  G GLGL
Sbjct: 715 VRFTPAGGRIILSARRAGDEVVLSVRDTGIGIPQDDQQRVFGRFERAHHQSRSGGAGLGL 774

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           S+V+SFI LHGG V I S+ E  T + C +P+
Sbjct: 775 SLVKSFIELHGGRVEIDSAPEHGTEVRCHLPT 806


>gi|83945797|ref|ZP_00958140.1| tyrosine kinase DivL [Oceanicaulis alexandrii HTCC2633]
 gi|83850800|gb|EAP88662.1| tyrosine kinase DivL [Oceanicaulis alexandrii HTCC2633]
          Length = 818

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 227/817 (27%), Positives = 377/817 (46%), Gaps = 60/817 (7%)

Query: 10  IGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQL 69
             + +++ TL    I   G++A  L +++    L    R   A+K+       +E  D+ 
Sbjct: 3   AAEPVQLATL----IVTGGSVAFALASSVWAYRLTAGARK--ARKLWRDRLLAAE--DRA 54

Query: 70  SKYHSLLTENNCLTIVWDGKDE-------------TPEIIGQLHQRIDIPQTDTD----- 111
            +  SL   +  + +VWD   +             +P  +  L Q  ++ Q+        
Sbjct: 55  ERNTSLFAAHPGVVVVWDVPPQSEAEHWSAPKLYGSPAALASLLQFAELSQSAGANGQIA 114

Query: 112 ------LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAF 165
                 +  F         +        L  EGQ F L    ++   I+ +GR +G    
Sbjct: 115 TDILDSISEFSARNASGETVSFRDRARALMAEGQPFSLTLTGRSGRKIQADGRPAGRQLV 174

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           + +       +E A      +   +    F  +        W  DQ G + W N +Y K 
Sbjct: 175 IWLTDTALRQTEGAS---DDEISHDDPIGFMDMMGRNPVPAWRMDQKGRLNWVNNAYVKA 231

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
            E   +   + I     L +  + ++                 +  G  +   +      
Sbjct: 232 VEASDV--AEVIDRQL-LLEPTLGEQARDVLNSGDPRTGARGVVLAGQRRVMSVTSYPVQ 288

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
            G  G A+DV+        L    E     L+++T A+AIFD+ + L F+NR+F +++ +
Sbjct: 289 GGVTGFAVDVTDGEEAKAALNRFREAHDLTLNHMTEAVAIFDRAKKLVFYNRAFSQMFNV 348

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH----KDTWHLPNG 397
           + AFL   P++  LL+ LR   +LPEQ ++  W++   S Y+++        + W LP+G
Sbjct: 349 EEAFLNDRPAHGVLLDRLREKRRLPEQADYSAWRQAELSRYETAPNQDAEPDELWALPDG 408

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           +TL V    +P GG + +FE++T Q+ L+ +YNT +KVQ  T+D L E VAVFG DGR+K
Sbjct: 409 RTLRVARQRHPMGGLLLIFEDMTDQLSLQARYNTQLKVQRATLDKLHEAVAVFGSDGRLK 468

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQG 516
           L N AF +LWK +  RL  G H  ++ A+C+  Y+ ++ W    A IT    E RK++ G
Sbjct: 469 LRNAAFETLWKLDPERLD-GVHFDDMVASCTPLYDNAEAWGQLKARITDPSPESRKAMTG 527

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +     SVL +   PLP+  T++ + ++TDS R E AL ++ EAL  ++ IK  FV+HV
Sbjct: 528 EIRRADHSVLTWLTRPLPDGATLIAWDDITDSRRIESALRDRAEALEASERIKTEFVEHV 587

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           SY+LR+PLT I G+ DLL     G L+ +Q +++  I  +S  L  L++DILD+A +DAG
Sbjct: 588 SYQLRTPLTTIHGYADLLAGGFAGDLSDRQKEHMGAIQTASAQLGKLIDDILDIAAIDAG 647

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +++    + ++ L  E  + IA++   + I++ + +D       AD +RL Q+   +L+
Sbjct: 648 QLEMELGDVNVHALAEESMELIASRAEHSGIKLTLNADEDGPLIRADGKRLKQVIYNLLT 707

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS----NAHRGQRR 752
           NAMD  + G  V + A     D    V ++G  I  D    +F RF       A  G   
Sbjct: 708 NAMDHVNPGGAVEVGAEVAGDDVSLWVADDGVGIAPDRQAKIFERFERGDGGGAGLGLAL 767

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   V   I LHGG V + S     T + C +P
Sbjct: 768 --------VNDIIRLHGGWVELESEPGEGTRVTCHLP 796


>gi|158422334|ref|YP_001523626.1| ATP-binding ATPase [Azorhizobium caulinodans ORS 571]
 gi|158329223|dbj|BAF86708.1| ATP-binding ATPase [Azorhizobium caulinodans ORS 571]
          Length = 864

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 232/763 (30%), Positives = 370/763 (48%), Gaps = 20/763 (2%)

Query: 34  LLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP 93
            L  +   I  +R R   ++           +   +    +L   +    I+W       
Sbjct: 111 SLMALAAGIYAVRARTRRSRAERHLSERAQALRADVQALRALAAGSARGFILWRDGGRLE 170

Query: 94  EIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153
                     D             W+       L      L +EG  F ++   +    +
Sbjct: 171 SFGDAASAFSDAADAHALANGLVAWVGVEAVAALEGPLAALVREGTPFRILTRDRAAALL 230

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IEGR     A LR+++             +    S      + +FD     +W R   G
Sbjct: 231 QIEGR---GVAGLRVIAAGE------PAAGEGVGASTQAQALRAIFDGAPVPMWWRSPDG 281

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
            +   N +++K              E  +L  +  ++   ++    + +   V  +  G 
Sbjct: 282 TLEAVNAAFEKAVACGAPEGA----ERSELLDQAAREAAEAAHRQGQPYVARVRVVAGGK 337

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVN----DQLTHTYEILHNLTVAIAIFDQNRYLQ 329
            +   +V     +G AG+AIDV+ +          L      L  L  A+ IF  +  + 
Sbjct: 338 RRLLDVVEAAGPYGAAGVAIDVTDQEAARVEHERSLAAHRRTLDQLNTAVVIFGPDDRVD 397

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           FHN ++  L++++ AFL   PS  E+LE LR+A K+PEQ +++ W+E +   Y+  E   
Sbjct: 398 FHNTAYERLFDLEPAFLDQRPSQSEVLERLRAARKVPEQADFRAWREQLRESYRGLEPMN 457

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           D WHLP GQ L V+      GG  ++F++++  + LE +YN+L+++QGET+D L+E VAV
Sbjct: 458 DWWHLPGGQMLRVVAAPTAEGGVTFLFDDMSEHMALEGRYNSLIRIQGETLDGLAEAVAV 517

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           FG DGR++L N AF  LW      L    HI  +AA C   + ES  W     +IT+  D
Sbjct: 518 FGSDGRLRLYNQAFLRLWSLSAQALGERPHIDAVAAMCRPKHGESGAWARIRNVITAL-D 576

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            R+     LE     VL+ +  PLP+  TM+TF +VTDSV+ ERAL E+NEAL  AD +K
Sbjct: 577 HREGETLRLETADKRVLDGAAQPLPDGGTMVTFRDVTDSVKVERALIERNEALEAADVLK 636

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           N+FV HVSY LR+PL ++IG+  +L     G +N +Q +++ +++ S+  L  L++DILD
Sbjct: 637 NAFVGHVSYHLRTPLNSLIGYAHMLAEGVAGEMNPRQREFMTHVNQSADALRELIDDILD 696

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           LAT+DAG M L+   + +   L     S+   +    +R+++   G+ G+F+AD +R+ Q
Sbjct: 697 LATIDAGAMALDLDAVDVTATLEAAADSVRDLLESAGVRLELEWSGEPGTFIADGRRVRQ 756

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           I   +LSNA+     GS V L+A R     + +V+++G  I     + +F RF S    G
Sbjct: 757 ILFNLLSNAIAVEPPGSAVTLRADRLRDALVLTVRDHGPGIDPATVEQLFQRFESAG--G 814

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +RRGVGLGLSIV SF+ LHGG V++  +  G T   C  P  +
Sbjct: 815 KRRGVGLGLSIVRSFMELHGGTVTLKPAPGGGTLAICVFPLDQ 857


>gi|144900968|emb|CAM77832.1| sensor histidine kinase protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 845

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 218/793 (27%), Positives = 379/793 (47%), Gaps = 40/793 (5%)

Query: 25  AVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTI 84
                 AG+L + ++P I  +R R + + +             ++      L  +    +
Sbjct: 62  VAMALGAGVLASVLLPAIAWLRLRLNRSLQAVSL------AETRIESLRECLGASPDGYL 115

Query: 85  VW--DGKDETPEIIGQLHQRIDIPQTDTDLLS-FENWLKFHHYIKLSKATEKLRKEGQSF 141
            W  D    +  +   L     +  +  D+L+ F      H  ++L  A   LR EGQ+F
Sbjct: 116 CWIEDEFGCSRRLAVLLTLPRGLDSSLEDVLACF----DPHDGLRLETAIGVLRDEGQAF 171

Query: 142 DLVAETQND-CAIKIEGRVSGSCA------FLRILSLDGIYSELAETTLKCKKLSNHISV 194
           ++          I+  G  + S A       +    +      + +     + L+   + 
Sbjct: 172 EVDLTLSAGSRRIRAMGVRAASPAGDMLADLVWFRDVSDSAVAVDDLARSLQALAADATY 231

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE----IKK 250
            K L D+L   VW RD+   +L  N +Y    E      + A+    +L  ++     + 
Sbjct: 232 LKALIDTLPMPVWLRDEDLSVLMVNKAYAAAVEATSA--EAAVQAQVELASDDHVREARA 289

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE----AGIAIDVSKEITVNDQLT 306
               + A  +    +   +  G  +   I  +    G+    AG   D ++   + +QL+
Sbjct: 290 LAARARAAGEPRSASFHLVLAGERRLAHITEMPLEVGDTLLTAGFIEDHTRVEELQEQLS 349

Query: 307 HTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           H      E+L  L+ AIAIF  +  L F N +F  LW ++  +L   P+   +++ LR  
Sbjct: 350 HHVSAQVEVLERLSTAIAIFTTDTRLAFFNTAFSRLWRLERDWLENQPTYGAVMDALRDR 409

Query: 363 NKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
             LPE  +++  KE     + S  +  +   HLP+G+TL  +V+ +P GG I+ +E+ T 
Sbjct: 410 RLLPEAADYRALKEEELRRFISLIDPIETLMHLPDGRTLRRVVSPHPYGGLIFTYEDFTD 469

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            + +E  +NT + VQ  T+DHL EG+AVFG D R+KLSNPAF  +W    + L+   H+ 
Sbjct: 470 TLAMERSFNTAMAVQRATLDHLHEGLAVFGDDRRLKLSNPAFARMWGLSVDDLAGEPHLN 529

Query: 482 NIAATCSRYY----NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            +      Y+    + +  W      + +   ER+  +  LE     +L+ + +PLP+  
Sbjct: 530 ELVERLRPYFEGRPDRASTWAPARERLLALVGERRGGEWRLERQDGMILDCASVPLPDGA 589

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           ++L F++VTD+ R ERAL E+NEAL  AD +K+ F+ +VS E+  PLT IIGF ++L + 
Sbjct: 590 SLLAFLDVTDTARVERALIERNEALAAADTLKSEFMSNVSAEVAKPLTTIIGFAEMLDSD 649

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G L+ +Q  Y++ I  +   L +L+ DILDLA ++AG + L   T+ ++ +L+ V   
Sbjct: 650 YFGKLSKRQHDYMKGIVEAGNALKSLIADILDLAAIEAGHLTLELDTVDIHPMLSSVLGL 709

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  ++ E  +++       +G  VAD++RL Q+   ++ NA+ ++  G  + ++A R +G
Sbjct: 710 VRERVREKKLQLDFDCPLDMGWIVADQRRLRQVMFNLIGNAVKYTPNGGAIAVRAERRDG 769

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +    V + G  IP +  + VF  FV   H GQ  G GLGL++V  F+ LHGG V + S 
Sbjct: 770 EVALIVADTGPGIPPEDMERVFKSFVRTIHDGQ-DGAGLGLALVRRFVELHGGTVELDSV 828

Query: 778 DEGVTTINCRIPS 790
               TT+  R+PS
Sbjct: 829 PGQGTTVTVRLPS 841


>gi|294011631|ref|YP_003545091.1| putative sensor histidine kinase [Sphingobium japonicum UT26S]
 gi|292674961|dbj|BAI96479.1| putative sensor histidine kinase [Sphingobium japonicum UT26S]
          Length = 781

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 180/775 (23%), Positives = 341/775 (44%), Gaps = 21/775 (2%)

Query: 33  MLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW--DGKD 90
            ++  ++  + L                   +   +L +  +L+       IV   DG+ 
Sbjct: 8   AVILGVVLALWL-GAAIWALSSGQRRRREGMQAQGKLDRLSALIASAPAAPIVIHSDGRL 66

Query: 91  ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150
           E  + + +   +  +P   ++L + +  L+      L++     ++ G+SF L     + 
Sbjct: 67  EAADRLAKWLGKERVPAFVSELTAPDGGLEPDDATALAQEIAAAQRAGRSFALPVRGVDS 126

Query: 151 -CAIKIEGRVSG------SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              + + G  +G          L I       SE+     + ++L   +     L ++  
Sbjct: 127 SRLLLVRGAPAGSVLAESGGVVLWIFDATDSQSEIQTLKGRVEQLREALEALAGLVEAAP 186

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE----EIKKRMISSSALE 259
           F +WHR     +   N +Y +  + E    ++ I    +L +       +     + A  
Sbjct: 187 FPMWHRTADMRLSLVNTAYVRAVDGENA--REVIANGTELVETVGGLTPQAAAAQTLADG 244

Query: 260 KNFCETVSTLEHGNNKSYKIVRVL-NSFGEAGIAIDVSKEITVNDQLTHT----YEILHN 314
                 V     G  ++ ++V V   + G AG A+D ++      +         ++L  
Sbjct: 245 TPVERMVPATIDGERRTIRVVDVPLGAAGVAGFALDQNELEQARVEHRRLEAAQRDLLDR 304

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           L+  +A F  +R L+F N+ F+ L+ +D   LA NP  + +L+ +R A +LPE  ++  W
Sbjct: 305 LSAGVARFGSDRALRFWNQPFMSLFGLDQERLADNPPFERVLDQMREARRLPENRDFPAW 364

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           +      + S +  ++ W L +G  L V     P GG + +FE+ T QV L +  +TL++
Sbjct: 365 RAERRDWFLSPDPREENWLLADGTHLRVYAQPLPDGGLLLIFEDRTEQVQLSSARDTLLR 424

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           V+  T D+L E + VF  DGR+ L N  FR++W   E+ L+    I  +  T      + 
Sbjct: 425 VRTATFDNLFESIGVFSSDGRLHLWNSRFRTIWDVSEDLLAQHPRIDELMRTVQSRLAKP 484

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
              +L   ++ +   ERK   G +      + E++ IPLP+   + T ++VTDS R E+ 
Sbjct: 485 QQGNLVRELVRAATVERKQRVGHVGFADGRIFEFAAIPLPDGNALFTMLDVTDSRRVEQV 544

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++N+AL +AD++K +FV ++SYELR+PLT I GF +++     G L++   +YV+ I 
Sbjct: 545 LRDRNDALEQADKVKTAFVTNMSYELRTPLTTIAGFAEMMSAGYAGELSASAKEYVDGIL 604

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++++LDL   +AG++ +  + + L     +    I        I + +   
Sbjct: 605 QSTNRLSMLIDNVLDLTQGEAGMLPVEKAPVDLAVEARDAVARIKGDATAKGIDLALSLQ 664

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             LG+   D++R+ Q    +L NA+ + S+G  V+L       +    V +NG  I    
Sbjct: 665 ASLGTIQGDKRRIGQALDHLLENAVRYCSRGGRVLLHGDGTTDNARLVVSDNGPGINAKR 724

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++F+              G+GL +       HGG + + S     T +   +P
Sbjct: 725 QATIFDASSRTEQARNGGKAGIGLPLARQLAQAHGGTLQLVSEPGQGTMVVIELP 779


>gi|114797839|ref|YP_759129.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444]
 gi|114738013|gb|ABI76138.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444]
          Length = 815

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 219/775 (28%), Positives = 386/775 (49%), Gaps = 45/775 (5%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQ---LHQRIDI 105
              AK+  E           L    S+L  +  + +VW G  +  E+ G      +    
Sbjct: 33  RGAAKRYREVAGDRETENAGLK---SVLGAHPGVILVWQG--DALELDGDEITPPELYGS 87

Query: 106 PQTDTDLLSF-ENWLKFHHYIK-------------------LSKATEKLRKEGQSFDLVA 145
           P     LLSF ++ +     ++                   L     +LR+ GQ F L  
Sbjct: 88  PVALAGLLSFTDDAISPDPAVRIVEGLADLEARDSAGQDTTLRIRLRELRESGQPFSLTI 147

Query: 146 ETQNDCAIKIEGRVSGSCAFLRILS--LDGIYSELAETTLKCKK--LSNHISVFKVLFDS 201
              +   ++ +GR +G  A + I    + G+    A   L+  +  ++   + F  +   
Sbjct: 148 IGTSGRFLEADGRTAGVRAVVWINDTTIKGLEESSARGKLEEARQVIARDPTAFLDMLGK 207

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
             F  W     G + WAN +Y +  +   +     + E + +  + + ++   +      
Sbjct: 208 APFPAWRVSGMGRLQWANPAYIEAVDGGNL---DRVLERQLMLDQAVSEQARKTITDGAE 264

Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTV 317
             ET   + +   ++ +++    S G   +A DV+++    ++L        E L+++  
Sbjct: 265 HDETRHIVVNNQRRAMRVLTFALSGGAGCMAFDVTEQENSREELNRHVRAHDETLNHVAD 324

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           A+AIF  +R L F+N++F ++W+++  FL   PS+ +LL+ LR   KLP ++N+  W+  
Sbjct: 325 AVAIFGPDRKLNFYNKAFRDMWDLEETFLLDRPSHGQLLDRLREKKKLPARMNYAEWRAE 384

Query: 378 IFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
             S Y   +  K D W LP+ +TL V    +P GG + +F+++T  + L+T++N L+K Q
Sbjct: 385 EISYYLDIDGVKEDKWSLPDNRTLSVTRQRHPMGGLLVLFKDITDHLSLQTRFNALIKTQ 444

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
             T+D+L E VAVFG DGR++L N AF  +W    +RL       ++ + C   +++ D 
Sbjct: 445 SSTLDNLHEAVAVFGSDGRLRLHNRAFERVWDIPADRLKDRPDYADVISGCVPLFHDMDI 504

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           WD     IT     R+S  G +     S+L Y   PLP+  TM+ F +VT + R E AL 
Sbjct: 505 WDAIKVHITD-PTARQSTTGEMRRSDGSLLTYLTHPLPDGNTMIAFADVTATRRVESALR 563

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EA   AD +K  FV++VSY+LRSPLT I G+ +LL+T + G L  +Q+ +V  I ++
Sbjct: 564 DRAEAFEAADRLKTEFVRNVSYQLRSPLTTIFGYAELLETQRNGPLTERQTDHVRAILSA 623

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  L  L+ +ILDLA ++AG + L  S + L +++++  + + +K  +  + ++    G+
Sbjct: 624 SDHLNKLIENILDLALIEAGRLDLELSELDLEEVIHQSVELVVSKAEDTEVSVRADITGR 683

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           LG    D +R+ Q+   ++SN++ F+  G  +++ A R       SV++NGS +  D   
Sbjct: 684 LGQMRGDERRIKQVLFNLISNSLRFTEPGGEIVVSAQRMGDMITLSVRDNGSGLEADKRA 743

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + F+ FVS      +RG GLGL++V+ FI+LHGG V + S D G   + C +PS+
Sbjct: 744 TSFDSFVSGD----QRGAGLGLALVKHFIHLHGGTVGMKSVDGGGLEVTCWLPSQ 794


>gi|254292570|ref|YP_003058593.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254041101|gb|ACT57896.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 814

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 220/779 (28%), Positives = 380/779 (48%), Gaps = 38/779 (4%)

Query: 42  ILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD------GKDETPEI 95
           +  +R  +       +      E+ ++L++  S+   +  + +VW+      G    P +
Sbjct: 21  LWALRISDGARGAAKKYRERARELEEKLARSDSVFGAHPGVVLVWEEDEILEGSWGKPSV 80

Query: 96  IGQ------LHQRIDIPQTDTDLLSFENWLKFHHYIK-------LSKATEKLRKEGQSFD 142
            G       +    D   +    +     L              L +   +LR EG  F 
Sbjct: 81  YGSHVALAAVLNFTDDSMSSDPAVRLLEGLGDLEARDGAGRDATLRERLMQLRTEGAPFS 140

Query: 143 LVAETQNDCAIKIEGRVSGSCAFLRILS--LDGIYSELAETTLKCKK--LSNHISVFKVL 198
           L     N   ++ +GR +G  A L +    + G+    A   L+  +  ++   + F  +
Sbjct: 141 LTIIGPNGRFLEADGRTAGGRAVLWVSDSTIKGLEESGARGRLEEARQIIARDPTAFLEM 200

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
                F+ W    AG + W N SY K  E + +     + + + +  +EI  +  +    
Sbjct: 201 LGKAPFIAWRLSGAGRLQWVNESYLKAVEGKNLDH---VLDRQIMLDQEIASQAQTVLTD 257

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHN 314
           +    +T   +  G  ++ +++    S G AG+A DVS+E    + L        + L++
Sbjct: 258 KTESRKTRYIVIDGERRAMRVLMFPLSGGVAGMAFDVSEEEAARETLERHRRAHDDTLNH 317

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           ++ A+AIF  +R L FHN+ F ELW+++  FL   PS+ E L+ LR +  LP Q  +  W
Sbjct: 318 VSDAVAIFGADRKLSFHNKHFEELWDLNPRFLLEKPSHGEFLDRLRESKLLPAQQKYSDW 377

Query: 375 KENIFSVYKSSETH---KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +                ++ W LP+G+TL V    +P GG + +F++++ ++ L+  YN 
Sbjct: 378 RTKELDYNTGGSKRSIDENMWMLPDGRTLQVTRQKHPLGGILLLFKDISDELTLKANYNA 437

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L+  Q  T+D LSE VAV+G DG ++LSN +F  LW+ E  +L        +A  C+  +
Sbjct: 438 LINQQKATLDKLSEAVAVYGGDGGLRLSNASFEKLWQLEPAKLKNAPEFDEVAEMCAPLF 497

Query: 492 NESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           ++   W      +T+   E R+  +G ++    S++ +   PLP+  T++ FV+ T S R
Sbjct: 498 HDKSVWAAIKGRVTNPTPEARQEFRGEMKRSDGSIVTFLTQPLPDGATLIAFVDATASRR 557

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E AL E+ EA + AD +K  FVQ+VSY+LRSPLT I+G+ + L++ K GSLN++Q + V
Sbjct: 558 VEGALRERAEAFQAADRLKTEFVQNVSYQLRSPLTTILGYAEFLESGKQGSLNAQQLENV 617

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  +S  L  L+ +ILDLAT++AG M L+   + L  L++E  + +     +  + IK
Sbjct: 618 NSILQASDHLSRLIENILDLATIEAGRMDLDLKDLDLKSLIDESVEMVVANAADTKVSIK 677

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V     +GS  AD +R+ QI   +L+NA+ F++ G T+ +KA +  G     V + G  +
Sbjct: 678 VDCPATIGSMHADERRIKQILFNLLTNALRFTTAGDTIKVKAEKAEGVIRLQVTDTGKGV 737

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +     F+ F S  +R    G GLGL++V SF+ LHGG V++ S      T+ C +P
Sbjct: 738 AYEQQAEAFDAFTSGDNR----GAGLGLALVRSFVELHGGWVAMKSKPTKGATVICCLP 792


>gi|154247224|ref|YP_001418182.1| histidine kinase [Xanthobacter autotrophicus Py2]
 gi|154161309|gb|ABS68525.1| histidine kinase [Xanthobacter autotrophicus Py2]
          Length = 837

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 231/726 (31%), Positives = 377/726 (51%), Gaps = 33/726 (4%)

Query: 73  HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132
             LL++     ++W G++   ++ G+  + +               L          A  
Sbjct: 127 RVLLSDGAPAFLLWTGREAPADLFGRTPETLKAE------------LGPAS-SAFETALA 173

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
           +L+ E  +F    +T     ++++GR       L +  L    S      +     +   
Sbjct: 174 RLKAEDGAFSQTLDTPRG-PLRLDGRSRAGAGILLLAPLSSETSGHEAGPMASGLAALLD 232

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
           +             W R   G + + N ++           ++A  +   L   + +   
Sbjct: 233 AAPAPA--------WLRGADGALSYVNPAFVVAVGAASA--EEARAQGLDLLDGKTRAAA 282

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----T 308
            S+   + +F + V  +  G  +  ++V V   FG AGIAIDV+ E     ++       
Sbjct: 283 ASAEGADGHFRQRVKAVTKGQRRQMEVVEVAGIFGTAGIAIDVTSEEDARAEMKQAVVAH 342

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
              L  LT A+AIF  +  L FHN ++  L+++  AFL  +P   E+LE LR+  K+PEQ
Sbjct: 343 RRTLDQLTTAVAIFGADERLVFHNAAYERLFDLSPAFLDQHPPEGEILEDLRTRRKVPEQ 402

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            +++ W+  +   Y++ E   D WHLP GQ L V+VT N  GG  ++F++L+  + LE++
Sbjct: 403 ADFRGWRAQLREAYRAIEPVNDWWHLPGGQMLRVVVTPNAEGGVTYLFDDLSEHMALESR 462

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           YNTL+++QGET+D L+E VAVFG DGR+ L N AF  LW  E   L    H+  +AA C 
Sbjct: 463 YNTLIRIQGETLDGLAEAVAVFGSDGRLNLYNHAFLGLWSLEARALGERPHVDAVAALCR 522

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
             + E+  +      +T+    R+++   +E     VL+ +  PLP+  TM+TF +VTDS
Sbjct: 523 PLHGETSAFARIRHAVTTI-GPREAVTLRIERPDGRVLDGATQPLPDGGTMVTFRDVTDS 581

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V+ ERAL E+ EAL  AD++KN+FV HVSY LR+PL  ++G+ D+L+    G LN++Q  
Sbjct: 582 VKVERALIERAEALEAADKLKNAFVGHVSYHLRTPLNTLLGYADMLRDGLAGPLNTRQQD 641

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+E++  SS  L  L++DILDLA++DAG M+L+ S + + + +  V +++   + E  + 
Sbjct: 642 YLEHMRQSSDQLRALIDDILDLASIDAGAMELDLSDVDVGETVLGVAEAVRDPVAEAGLN 701

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V      G FVAD +R+ QI   +LSNA+  S  G TV L A R +G  +F+V++ G 
Sbjct: 702 LAVSVGPDAGHFVADGRRVRQILFNLLSNAIAVSPAGGTVSLGAVRRDGALVFTVRDEGP 761

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG----VTTI 784
            +P ++  ++F RF S +   + RGVGLGL+IV SF+ LHGG V+++ +  G     T  
Sbjct: 762 GVPAEVADTLFERFESRSAGPRHRGVGLGLAIVRSFMTLHGGSVTVAPAGRGPDAKGTLA 821

Query: 785 NCRIPS 790
            C  P 
Sbjct: 822 TCIFPL 827


>gi|94496374|ref|ZP_01302951.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
 gi|94424120|gb|EAT09144.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
          Length = 782

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 179/784 (22%), Positives = 341/784 (43%), Gaps = 22/784 (2%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +     +A M+L  ++   L +                 ++   +L +   LL       
Sbjct: 1   MTTLSPVAAMILGIVLA--LWLGAAIWAVMSGQRMRREGTQSQGKLDRLTMLLASAPAAP 58

Query: 84  IVW--DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141
           ++   DG+ E  + + +   R   P   ++L + +  ++      L++     ++ G+SF
Sbjct: 59  VIVHPDGRLEAADRLAKWLGRTRAPNFLSELTAEDGGIEPEDAHALAQVIAAAQRAGKSF 118

Query: 142 DLVAETQND-CAIKIEGRVSG------SCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
            L     +    + + G  +G          L I       +E+     +  +L + +  
Sbjct: 119 ALPVRGIDSTRLLLVRGAPAGPELAESGGVLLWIFDATDSQAEIQSLRSQVAQLRDALEA 178

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE----EIKK 250
              L ++  F +WHR     +   N +Y +  + +       I +  +L +       + 
Sbjct: 179 LAGLVEAAPFPMWHRTPDLRLSLVNSAYVRAVDAQDA--ADVITQGIELVESVGGVPPEA 236

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-NSFGEAGIAIDVSKEITVNDQLTHT- 308
               + A ++     V     G  +  ++V V     G AG A+D  +      +     
Sbjct: 237 AAADAMARDQLVERMVPATIDGERRMMRVVDVPLGDAGIAGYAVDQHELEQARVEGRRLE 296

Query: 309 ---YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
               ++L  L+  +A F  +R L+F N+ F+ L+ +    LA  P  + +L+ +R A +L
Sbjct: 297 AAQRDLLDRLSAGVARFGPDRMLRFWNQPFMSLFGLRQEALADAPVFERVLDQMRDARRL 356

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
           PE  ++  W+      + S E  ++ W L +G  L V     P GG + +FE+ T QV L
Sbjct: 357 PEHRDFPAWRSERRDWFLSPEPVEENWLLQDGTHLRVYAQPLPDGGLLLIFEDRTEQVQL 416

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +  +TL++V+  T D+L E + VF  DGR+++ N  FR++W   E  L+    I ++  
Sbjct: 417 SSARDTLLRVRTATFDNLFESIGVFAADGRLQMWNSRFRTIWGASEELLATHPRIDDLMR 476

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                  + +  +L   ++ +   ERK   G +      + E++ IPLP+   + T ++V
Sbjct: 477 DVQSRLAKPEQGNLVRELVRAATVERKQRMGHVGFADGRIFEFAAIPLPDGNALFTMLDV 536

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TDS R E+ L ++NEAL +AD+IK +FV ++SYELR+PLT I GF +++     G L+  
Sbjct: 537 TDSRRVEQVLRDRNEALEQADKIKTAFVTNMSYELRTPLTTIAGFAEMMSAGYAGELSEP 596

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              YV  I  S+  L  L++++LDL   +AG + +    + L DL     + +  +    
Sbjct: 597 AKDYVSGILQSTGRLSMLIDNVLDLTQSEAGTLPIERLPLDLGDLARARVERLRAEAVAK 656

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + + +     +G    D +R+ Q    +L NA+ + S+G+ ++L            + +
Sbjct: 657 GMDLALDLTPAVGVVRGDERRIGQCIDHLLENALTYCSRGARILLHGDGTADRARIVISD 716

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           NG  IP +  +++F   V           G+GL +    +  HGG + + S     T I 
Sbjct: 717 NGPGIPTERQRAIFEPLVRAEQARSGAKAGMGLPLARQLVQAHGGTLKLVSKKGQGTMIL 776

Query: 786 CRIP 789
             +P
Sbjct: 777 IELP 780


>gi|307292814|ref|ZP_07572660.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|306880880|gb|EFN12096.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 781

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 187/791 (23%), Positives = 343/791 (43%), Gaps = 32/791 (4%)

Query: 18  TLFSCKIAVFGTIAGM-LLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLL 76
           TL      +FG +    L   +    L   QR               +   +L +   LL
Sbjct: 2   TLTPLAAVIFGVVLAAWLGAAVWA--LSSGQRR---------RREGMQAQGKLDRLSVLL 50

Query: 77  TENNCLTIVW--DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
                  IV   DG+ E  + + +   +   P   ++L + +  L+      L++     
Sbjct: 51  ASAPAAPIVVHPDGRLEAADRLAKWLGKDRGPTFLSELTAPDGGLEADDAAALAQEIAAA 110

Query: 135 RKEGQSFDLVAETQND-CAIKIEGRVSG------SCAFLRILSLDGIYSELAETTLKCKK 187
           ++ G+SF L     +    + + G  +G          L I       SE+     K ++
Sbjct: 111 QRAGRSFALAVRGVDSSRLLLVRGAPAGPVLAESGGVVLWIFDATDSQSEIQSLKGKVEQ 170

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE- 246
           L   +     L ++  F +WHR     +   N +Y +  + E    ++ I    +L +  
Sbjct: 171 LREALEAMAGLVEAAPFPMWHRTADMRLSLVNTAYVRAVDGESA--REVIAHGTELVETV 228

Query: 247 ---EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-NSFGEAGIAIDVSKEITVN 302
                +     +          V     G  ++ ++V V   + G AG A+D ++     
Sbjct: 229 GGLTPQAAAAQTLTDGAPVERMVPATIDGERRTIRVVDVPLGAAGVAGFAMDQNELEQAR 288

Query: 303 DQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +         ++L  L+  +A F  +R L+F N+ F+ L+ +D   L+ NP  + +L+ 
Sbjct: 289 VEHRRLEAAQRDLLDRLSAGVARFGSDRALRFWNQPFMSLFGLDQERLSDNPPFERVLDQ 348

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +R A +LPE  ++  W+      + S +  ++ W L +G  L V     P GG + +FE+
Sbjct: 349 MREARRLPENRDFPAWRAERRDWFLSPDPREENWLLADGTHLRVYAQPLPDGGLLLIFED 408

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            T QV L +  +TL++V+  T D+L E + VF  DGR+ L N  FR++W   E+ L+   
Sbjct: 409 RTEQVQLSSARDTLLRVRTATFDNLFESIGVFSSDGRLHLWNSRFRTIWDVSEDLLAQHP 468

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            I  +  T      +    +L   ++ +   ERK   G +      + E++ IPLP+   
Sbjct: 469 RIDELMRTVQSRLAKPQQGNLVRELVRAATVERKQRVGHVGFADGRIFEFAAIPLPDGNA 528

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T ++VTDS R E+ L ++N+AL +AD++K +FV ++SYELR+PLT I GF +++    
Sbjct: 529 LFTMLDVTDSRRVEQVLRDRNDALEQADKVKTAFVTNMSYELRTPLTTIAGFAEMMSAGY 588

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L++   +YV+ I  S+  L  L++++LDL   +AG++ +  + + L     +    I
Sbjct: 589 AGELSTSAKEYVDGILQSTNRLSMLIDNVLDLTQGEAGMLPVEKAPVDLAAEARDAVARI 648

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   I + +     LG+   D++R+ Q    +L NA+ + S+G  V+L       +
Sbjct: 649 KGDATAKGIDLALSLQASLGTIQGDKRRIGQALDHLLENAVRYCSRGGRVLLHGDGTTDN 708

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
               V +NG  I      ++F+              G+GL +       HGG + + S  
Sbjct: 709 ARLVVSDNGPGIDAKRQATIFDASSRTEQARNGGKAGIGLPLARQLAQAHGGTLQLVSEP 768

Query: 779 EGVTTINCRIP 789
              T +   +P
Sbjct: 769 GQGTMVVIELP 779


>gi|254696348|ref|ZP_05158176.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 581

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 242/582 (41%), Positives = 366/582 (62%), Gaps = 21/582 (3%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +Y +  +       + I E R+LF  + ++R+      E    E ++ + HG+ + + ++
Sbjct: 1   AYAQAVDMANAS--QVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVI 58

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            V    G  G+  D+++   V D+L+       E L  L+ A+AIFD    LQF N++FV
Sbjct: 59  DVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFV 118

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           +LW +D+A+L T PSN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+
Sbjct: 119 KLWGLDVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPD 178

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            +T+ V+   +P+GG  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR+
Sbjct: 179 TRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRL 238

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +LSNP+F +LW      +  GTHI  IA  C++   +    D F + +T F D+R    G
Sbjct: 239 RLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMG 297

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +EL   ++L ++++PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHV
Sbjct: 298 QVELSDGAILSFAVVPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHV 357

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           SYELRSPLTNIIGFT+LL+T   GSLN +Q +Y++YIS SS++LL +VNDILDLATVDAG
Sbjct: 358 SYELRSPLTNIIGFTELLQTPAFGSLNERQLEYLDYISTSSSVLLTIVNDILDLATVDAG 417

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           IM+L    + + + ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LS
Sbjct: 418 IMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLS 477

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRG 749
           NA++++ +GS ++L+ ARD  D +F+V ++G  +P ++  +VF RF S            
Sbjct: 478 NAVNYAPEGSNIVLQVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGL 537

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                     IV+SF+ LHGG V I + +E  TT+ CR PS+
Sbjct: 538 GLA-------IVKSFVELHGGRVEIDTGEERGTTVICRFPSE 572


>gi|260760720|ref|ZP_05873063.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671152|gb|EEX57973.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 574

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 241/572 (42%), Positives = 362/572 (63%), Gaps = 19/572 (3%)

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
               + I E R+LF  + ++R+      E    E ++ + HG+ + + ++ V    G  G
Sbjct: 2   ANASQVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVG 61

Query: 291 IAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           +  D+++   V D+L+       E L  L+ A+AIFD    LQF N++FV+LW +D+A+L
Sbjct: 62  LGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGLDVAWL 121

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
            T PSN  + + LR+  KLPEQ  W+ WK+++ S Y++ E  +  WHLP+ +T+ V+   
Sbjct: 122 ETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAVEPEEHMWHLPDTRTMRVVANP 181

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           +P+GG  W FEN+T + +LE +YNTL+KVQGET+DHL+E VAVFG DGR++LSNP+F +L
Sbjct: 182 HPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLSNPSFAAL 241

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           W      +  GTHI  IA  C++   +    D F + +T F D+R    G +EL   ++L
Sbjct: 242 WSLPSEMVREGTHISIIAKLCNQRGGDGLWED-FVSTVTGFLDQRDGRMGQVELSDGAIL 300

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            ++++PLP  QTMLTF++VTD+VR ERAL EKNEAL  AD+IKN FVQHVSYELRSPLTN
Sbjct: 301 SFAVVPLPKGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTN 360

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIGFT+LL+T   GSLN +Q +Y++YIS SS++LL +VNDILDLATVDAGIM+L    + 
Sbjct: 361 IIGFTELLQTPAFGSLNERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVS 420

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + + ++     ++ ++ ++NI + V     +  F AD  R+ Q+   +LSNA++++ +GS
Sbjct: 421 VVEAISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGS 480

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-------NAHRGQRRGVGLGLS 759
            ++L+ ARD  D +F+V ++G  +P ++  +VF RF S                      
Sbjct: 481 NIVLQVARDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAGLGLA------- 533

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV+SF+ LHGG V I + +E  TT+ CR PS+
Sbjct: 534 IVKSFVELHGGRVEIDTGEERGTTVICRFPSE 565


>gi|295687664|ref|YP_003591357.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295429567|gb|ADG08739.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 769

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 201/762 (26%), Positives = 354/762 (46%), Gaps = 35/762 (4%)

Query: 41  IILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET---PEIIG 97
            +    QR     ++    + L+           +   ++ +  V  G+       E + 
Sbjct: 22  ALWAFGQRRGFEARIAALKARLALQGGDAEAPAWVEAFDSAVIAVEGGRASLMAGAEGLD 81

Query: 98  QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG 157
              Q + +      +++        H  KLS     L + GQS    A  Q    + +EG
Sbjct: 82  ACAQVLGVSPDVQAVVAALGGADPDHAQKLS----ALFERGQSCAFDARGQGGW-VSVEG 136

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
           R +G+ A+LR+  + G  + L              + F    DS+    W     G  +W
Sbjct: 137 RAAGAMAWLRLAPVSGHDAGLPSA-----------ARFAAFVDSVVEPAWIAGADGQAVW 185

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
            N ++ +            +G+S   F   +   ++ ++   +           G  +++
Sbjct: 186 GNTAFVRAVGAGSASAPALLGKS---FDRAVDAMVVEAATKGERSEAIRWVNLEGRRRAF 242

Query: 278 KIVRVLNSFGEAG-IAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
           ++       G  G    DV++   V D      E     L+++  A+AIF   R L FHN
Sbjct: 243 RLSAQPLEGGGVGVFCADVTEIEDVRDAFKKHVEAHDETLNHIAEAVAIFSATRRLSFHN 302

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-T 391
            +F ELW ++ A+LA  P++ E+L+ LR   +LPE +++  WK    + Y+S     D  
Sbjct: 303 TAFAELWGLEPAWLADRPTHGEILDRLRQRRRLPETIDYAVWKAAELARYESLGPQADDL 362

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           WHLP+G+TL V+   +P GG + ++ ++T ++ L+ +YN L++VQ  T+D L++ VAVFG
Sbjct: 363 WHLPDGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLNDAVAVFG 422

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE- 510
            DGR++L N AF + W    + L        +   C    ++   W      +   D + 
Sbjct: 423 SDGRLRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLAFWRELKGRVADPDPQM 482

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R    G +    D ++ Y   PLP+  T++ F +VTD+   + AL +++ AL +A+ +K 
Sbjct: 483 RAPTSGEVRTSDDRIVVYQSRPLPDGATLIAFADVTDTRELQSALADRSAALDEAERLKR 542

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            FV +VSYELR+PLT IIG+++LL+ +    L+ +   +V  + A++T L   ++D+LD+
Sbjct: 543 DFVGNVSYELRTPLTTIIGYSELLERA--DGLSERGRNHVAAVRAAATQLARSIDDVLDM 600

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A +DAG M L    I ++DLL   ++          + + V  +  +G    D +RL Q 
Sbjct: 601 AQIDAGEMALEIQDIRVSDLLMNAQERALKDAQLGGVTLAVECEEDVGLIRGDAKRLAQT 660

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              ++ NA+  +  G  V L A R  G+    V + G  +P  +   +F+RFV       
Sbjct: 661 LDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFV----GRD 716

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           R G GLGL++V++ + LHGG V++ S     +T  C +P  +
Sbjct: 717 RGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQ 758


>gi|83309724|ref|YP_419988.1| PAS/PAC domain-containing protein [Magnetospirillum magneticum
           AMB-1]
 gi|82944565|dbj|BAE49429.1| PAS/PAC domain [Magnetospirillum magneticum AMB-1]
          Length = 844

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/799 (26%), Positives = 378/799 (47%), Gaps = 50/799 (6%)

Query: 27  FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY-HSLLTENNCLTIV 85
            G  A ++L   + ++ L+R R      +    +          +   SLL   +     
Sbjct: 54  LGIGALLVLVPALAVLALLRWR------MVSLAADAGRAVILADRLTESLLAAPDG-FYA 106

Query: 86  WDGKDET-PEIIGQLHQRIDIPQTDTDLLSFENWLK---FHHYIKLSKATEKLRKEGQSF 141
           W G+ E     +  L       ++     +F + L+        +L  A  +LR+EGQ F
Sbjct: 107 WLGEREICSRRLAVLLGLFGGTES-----AFMDVLESFAAADAAQLDSAARRLREEGQGF 161

Query: 142 DLVAETQND-CAIKIEG-RVSG--SCAF---LRILSLDGIYSELAETTLKCKKLSNHISV 194
           +L    ++    ++  G R  G    A    + +  +    +  AE   +   L      
Sbjct: 162 ELELRLRDGGRRVRAVGVRACGPEGAALADLVWMHDVTEGAAFEAELASRLAGLVVERER 221

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE----EIKK 250
            + L   L    W RD    +L  N +Y +  +    +   A+    +L  +    E + 
Sbjct: 222 IEGLLGVLPIPAWVRDDDLSLLHVNRAYARAVDVASPL--AAVAGQIELASDGSVREARA 279

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-----NSFGEAGIAIDVSKEITVNDQL 305
               + A  +   E+   +  G  +  +I              AG A+D+++   +  +L
Sbjct: 280 LAARARAAGEPRSESFHLVLGGQRRFTEITEAPFEAEDGGLLTAGYALDLTRVEELQQEL 339

Query: 306 THTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                   ++L +L  AIAIF  +  L F N +F  LW ++  +LA  P+   +L+ LR 
Sbjct: 340 ARHASAHAQVLEHLATAIAIFSTDTRLTFFNTAFTRLWRLEAEWLAAQPTYGAVLDSLRE 399

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTSNPRGGTIWMFENLT 420
              LPE  +++ +KE+    + S     +T  HLP+G+TL  ++ ++P GG I+ +E++T
Sbjct: 400 RRLLPEVADYRAYKEDELKRFISLIDAAETLLHLPDGRTLRRMIAAHPYGGLIFTYEDVT 459

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             + LE  +NT + VQ ET+DHL EGVAVF  DGR++L NPA+  +W    + L    H+
Sbjct: 460 DTLALERSFNTALAVQRETLDHLHEGVAVFKGDGRLRLFNPAYARIWNLAPSMLESEPHL 519

Query: 481 RNIAATCSRYYN----ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             +      Y+      +  W      + +  + R    G +E L DS+++++ +PLP+ 
Sbjct: 520 NELVEAHRPYFEGGAERASVWPEMRERLMALFNTRAPQSGRVERLDDSIVDFASVPLPDG 579

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +LT+++VTDS R ERAL E+NEAL  AD +K+ F+ +VS E+R PLT +IGF+++L  
Sbjct: 580 AMLLTWLDVTDSARVERALRERNEALAAADLLKSEFIANVSAEVRKPLTTVIGFSEMLAA 639

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G LN +Q +Y   I+ +   L  L++DILDLA ++AG M L   T+ ++ +L+ V  
Sbjct: 640 EYFGKLNKRQHEYARGITEAGQGLQALISDILDLAAIEAGQMALELDTVDVHPMLSGVLG 699

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  ++ E  + +       +G  VAD +RL Q+   +L NA+  +  G  V ++A R  
Sbjct: 700 LVRERVREKKVTLDFDCPLDIGWIVADERRLRQVLFNLLGNALKRTPSGGKVSVRAERRP 759

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR------GQRRGVGLGLSIVESFINLHGG 770
            +   ++ + G+ + ++  + +F  F +   R            G+GL++V+ F++LHGG
Sbjct: 760 SELALTISDTGTGLSDEQRERLFGGFATGGRREALPAGRADDDSGIGLALVQRFVDLHGG 819

Query: 771 HVSISSSDEGVTTINCRIP 789
            V ++S+    T +  R+P
Sbjct: 820 RVELASAPGEGTVVTVRLP 838


>gi|87200018|ref|YP_497275.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135699|gb|ABD26441.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 782

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 187/783 (23%), Positives = 343/783 (43%), Gaps = 25/783 (3%)

Query: 25  AVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL-- 82
                I  +L    +    L+      A++             Q  +   ++ E+  L  
Sbjct: 7   TALVLIGLLLAAWTVGAGWLVLDARRRARRGEALQR-------QARRLARMVDESPALPL 59

Query: 83  TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFD 142
            +  DG+ E P  +        +P   ++L + ++ L      +L  A  + +K G  F 
Sbjct: 60  LVRADGRIEGPARLALWLGFEAMPGYLSELDAGDHGLDEVELARLGDAVRRAQKTGTPFR 119

Query: 143 LVAETQND-CAIKIEGRVS------GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
           +    +    ++  +G ++      G  A +    +     EL     + +K  +  +  
Sbjct: 120 MALTPRGGSRSLCAQGHLADPQVSPGGAALVWFFDVSESEEELVALRAETRKAKSDFAGL 179

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG-ESRKLFKEEIKKRMIS 254
             L ++    +W R     +   N +Y      E      A G E  +  +     ++  
Sbjct: 180 SGLIEAAPLPMWFRGPDLRLRLVNSAYVAAVGAESADQVIAQGIELIEPVEGLSAAQVAR 239

Query: 255 SSALEKNFCET-VSTLEHGNNKSYKIVRVL-NSFGEAGIAIDVSKEITVNDQLTHTYE-- 310
            +   K   E  +     G  ++ ++  +     G AG  +D+ +   +  Q     E  
Sbjct: 240 QAHSRKVSIERSLLATIKGQRRAVRVTDLPLGDEGVAGYVVDIEEMEELIRQFRRFREAQ 299

Query: 311 --ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             +L  L+  IA FD+ R L F N+ F+ ++ +  A++   P  D +L+ +R A +LPE 
Sbjct: 300 REMLDTLSAGIAQFDEKRNLVFANQPFLRIFSVPQAWVVDTPPFDRVLDRMRDAGRLPEV 359

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            ++  W+      + + E  ++ WHL +G  L V+    P GG + +FE+ T Q+ L   
Sbjct: 360 RDFPEWRRERQGWFLAREPIEEPWHLSDGTHLRVVGQPMPDGGLLMIFEDRTEQLQLSAT 419

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +TL++ +  T D+L E +AVF PDGR++L N  F + W  +E  L+       + +  +
Sbjct: 420 RDTLLRTRTATFDNLFESLAVFAPDGRLQLWNRRFAADWGLDEEFLATHPRADVLLSRIA 479

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                       A +I     ERK   G L L     L  + +PLP+   +LT +++TDS
Sbjct: 480 DQLKRPAQVGTVAQVIQGATLERKQRSGRLALADGRHLALAGVPLPDGNGLLTVLDITDS 539

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +AE AL E+N AL +AD +K  F+ ++SYE R+PLT+I GF +LL++   G L  +Q++
Sbjct: 540 QKAEAALRERNAALVEADAVKTRFIANMSYEFRTPLTSIGGFAELLQSGIAGDLTEQQNE 599

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YVE I  S   L   + ++LDL+  +AG + L    + +  LL +V      ++    I 
Sbjct: 600 YVEAILTSVERLGEQIENVLDLSQSEAGTLPLAQEPVEIFPLLTDVVTERTERLAGAGIT 659

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNG 727
           + +  D   G    D +RL + F +++ NA+  + +G  ++++A+R   G     V +NG
Sbjct: 660 LDLRGDRSAGMVTGDARRLRRAFGQLIDNAIAATPEGGRILVEASRKKGGALQVVVSDNG 719

Query: 728 SSIPEDMCKSVFNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             +   +     +   VS   +   R  GLGL +V   +  HGG++ + S     T+   
Sbjct: 720 RGMEPAVLARALDGLKVSADGKAVERRQGLGLPLVRQLVEAHGGNLELMSEPGLGTSAIV 779

Query: 787 RIP 789
            +P
Sbjct: 780 MLP 782


>gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199]
 gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199]
          Length = 666

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 186/627 (29%), Positives = 311/627 (49%), Gaps = 27/627 (4%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +L    + + E               + + + +   VW R   G + + N         
Sbjct: 51  RALATERATVQELERSLPARLQEHE--RSILEGVAVPVWRRRPDGTLGYGNA-------- 100

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN-SFG 287
                  A+    +L  E++      +  + +   E+ + + HG+ +   +        G
Sbjct: 101 ------PAMPLYPEL--EKVGPLAERAIHVGRAQSESRNMVVHGDRRLVDVTETPAADGG 152

Query: 288 EAGIAIDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             G A D++    +  +L        ++L  L  A+AIF  ++ L F N +F  LW +D 
Sbjct: 153 TVGTARDLTALEQLQSELARHVDAHADVLETLRTAVAIFGPDKRLIFANTAFGRLWSVDA 212

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHV 402
             L  +P+  E+LE  R   +LPEQ +++ W+++   ++ +   +H++   LP+  T+ +
Sbjct: 213 DLLERDPTLTEVLERARENRRLPEQSDFRAWRDDFNRLFTTLIGSHEELLFLPDDTTVRM 272

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
            VTS+P GG + +FE++T ++ LE  YNTL  VQ ET+D+L +G+A FG DGR+KL NP 
Sbjct: 273 AVTSHPFGGLLMVFEDVTDRLTLERSYNTLTAVQQETLDNLYDGIAAFGADGRLKLINPT 332

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           +R  W   ++      H+  +       + E D W    A   +   ER    G +E   
Sbjct: 333 YRHQWGLPDDFGDDEPHVGLVLEAMRLKFGEEDRWPSVKAEWVTRLAERVPRSGRIEQSD 392

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             VL+Y ++PLP+  ++L+F +VTD++  +RAL E+ EAL  AD +K+ F+ +VSYELR+
Sbjct: 393 GRVLDYGVVPLPDGASLLSFRDVTDTLAVQRALQERTEALEMADRLKSEFLANVSYELRT 452

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  IIGF+++L+    G +N +Q +Y   I  SS  L+ LVNDILDLA+++AG ++L  
Sbjct: 453 PLNAIIGFSEILEQEYAGPMNDRQKEYARAILQSSNRLVRLVNDILDLASIEAGYLELER 512

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    L+  V+     +     I   V  DG +   + D +RL Q    ++SNA  F+
Sbjct: 513 IEVDPLRLIEAVEGLGRERARARRIDFSVRIDGTVAPIMVDERRLTQALYNLVSNAFAFT 572

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             G  V++    D+   +F V + G  I  +    VF+RF          G GLGL++V+
Sbjct: 573 PDGGRVLVTVEDDDDMVLFRVADTGVGIALEDQGRVFDRFERAGRDA---GAGLGLALVK 629

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
           S + LH G V + S     T + CRIP
Sbjct: 630 SLVELHHGTVELLSEPGHGTEVICRIP 656



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/459 (13%), Positives = 143/459 (31%), Gaps = 54/459 (11%)

Query: 7   TIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEIC 66
                +           +     + G    T++  +L  RQ    A       +  + + 
Sbjct: 5   ASAFAQSAADTVPGGTDVVTIMVLGG---FTVLLALLYARQIKKTADAERALATERATVQ 61

Query: 67  DQLSKYHSLLTENNCLTI------VWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120
           +      + L E+    +      VW  + +     G        P+           L+
Sbjct: 62  ELERSLPARLQEHERSILEGVAVPVWRRRPDGTLGYGNAPAMPLYPE-----------LE 110

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVS---GSCAFLR-ILSLDGIYS 176
               +   +A    R + +S ++V        + +    +   G+    R + +L+ + S
Sbjct: 111 KVGPLA-ERAIHVGRAQSESRNMVVHGDR-RLVDVTETPAADGGTVGTARDLTALEQLQS 168

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQ 234
           ELA        +   +     +F               +++AN ++ +    + + +   
Sbjct: 169 ELARHVDAHADVLETLRTAVAIF----------GPDKRLIFANTAFGRLWSVDADLLERD 218

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG---------NNKSYKIVRVLNS 285
             + E  +  +E  +    S     ++    + T   G         ++ + ++    + 
Sbjct: 219 PTLTEVLERARENRRLPEQSDFRAWRDDFNRLFTTLIGSHEELLFLPDDTTVRMAVTSHP 278

Query: 286 FGEAGIA-IDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
           FG   +   DV+  +T+            E L NL   IA F  +  L+  N ++   W 
Sbjct: 279 FGGLLMVFEDVTDRLTLERSYNTLTAVQQETLDNLYDGIAAFGADGRLKLINPTYRHQWG 338

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +   F    P    +LE +R   K  E+  W + K    +               +G+ L
Sbjct: 339 LPDDFGDDEPHVGLVLEAMR--LKFGEEDRWPSVKAEWVTRLAERVPRSGRIEQSDGRVL 396

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
              V   P G ++  F ++T  + ++       +     
Sbjct: 397 DYGVVPLPDGASLLSFRDVTDTLAVQRALQERTEALEMA 435


>gi|6435833|gb|AAF08344.2|AF083422_1 tyrosine kinase DivL [Caulobacter crescentus CB15]
          Length = 769

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 195/766 (25%), Positives = 348/766 (45%), Gaps = 29/766 (3%)

Query: 34  LLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP 93
           +   I   +    QR +L  ++    + L +          L   +  +  V  G+    
Sbjct: 15  VCLAISVALWSHGQRRNLEARIVALKTRLIQQGGSDDAPAWLDAFDTAVIAVEGGRANLV 74

Query: 94  EIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153
                L         D ++ +    L        ++    L + G+     A   +   +
Sbjct: 75  AGGEGLIACAKALGADAEVSAVVAALSDADP-NYAQKLTALFERGEPCVFEARGPHG-LV 132

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
            +EGR +G+ A+LR+  +D   S L              + F    DS+    W     G
Sbjct: 133 SVEGRAAGALAWLRLAPIDRADSGLPTA-----------ARFAAFVDSVVEPCWIAGADG 181

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
             +W N ++ +             G+S   F       ++ ++   +           G 
Sbjct: 182 QAIWGNAAFVRAVGAASAHAPALAGKS---FDRGADAEVVEAAGKGERREALRWINVEGR 238

Query: 274 NKSYKIVRVLNSFGEAG-IAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
            +++++       G  G    DV++   V D      E     L+++  A+AIF Q R L
Sbjct: 239 RRAFRLSAQPLDGGGVGVFCADVTEIEDVRDAFKKHVEAHDETLNHIAEAVAIFSQTRRL 298

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            +HN +F ELW ++ A+LA  P++ E+L+ LR   +LPE +++  WK    + Y+     
Sbjct: 299 SYHNTAFAELWGLEPAWLADRPTHGEVLDRLRQRRRLPETIDYAGWKAAELARYEDLGPQ 358

Query: 389 KD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            D  W LP+G+TL V+   +P GG + ++ ++T ++ L+ +YN L++VQ  T+D L++ V
Sbjct: 359 ADDLWDLPDGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLNDAV 418

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           AVFG DGR++L N AF + W    + L        +   C    ++   W      +   
Sbjct: 419 AVFGSDGRLRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLSFWRELKGRVADP 478

Query: 508 DDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           D + R    G +      ++ Y   PLP+  T++ F +VTD+   + AL +++ AL +A+
Sbjct: 479 DPQMRAPTSGEVRTSDSRIVLYQSRPLPDGATLIAFADVTDTRDLQSALADRSAALAEAE 538

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K  FV +VSYELR+PLT IIG+++LL+ +    ++ +   +V  + A++T L   ++D
Sbjct: 539 RLKRDFVGNVSYELRTPLTTIIGYSELLERA--DGISERGRNHVAAVRAAATQLARSIDD 596

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD+A +DAG M L    I ++DLL   ++          + + V  +  +G    D +R
Sbjct: 597 VLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGKR 656

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q    ++ NA+  +  G  V L A R  G+    V + G  +P  +   +F+RFV   
Sbjct: 657 LAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFV--- 713

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               R G GLGL++V++ + LHGG V++ S     +T  C +P  +
Sbjct: 714 -GRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQ 758


>gi|304320655|ref|YP_003854298.1| sensory box histidine kinase, hypothetical [Parvularcula
           bermudensis HTCC2503]
 gi|303299557|gb|ADM09156.1| sensory box histidine kinase, hypothetical [Parvularcula
           bermudensis HTCC2503]
          Length = 935

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/843 (26%), Positives = 377/843 (44%), Gaps = 71/843 (8%)

Query: 3   AGMATIGIGKGIEI-CTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
           A + +    +G+E    + +  +   G +A  L  T+  I + +  R +           
Sbjct: 44  AALMSRAAAQGVEATGGVDATLLVTGGAVAFGLGATVWAIKVAMAGRTATLDWSRRL--- 100

Query: 62  LSEICDQLSKYHSLLTENNCLTIVWDG-KDETPEIIGQLHQRIDIPQTDTDLLSF----- 115
            + +   L    S+L  +  L +VWD  +DE     G   + +  P     LL++     
Sbjct: 101 -AAMEATLDSSESILASHPGLVLVWDDTEDELEAGWGD-PRILGGPAALATLLTYTDHSD 158

Query: 116 ENWLKFHH-------------------YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIE 156
           E                             L +    LR  G  F     T     I+ +
Sbjct: 159 ERGDNPASGLLEALGDLPLEGDQNRSAAPTLREKVATLRTHGIVFSGAVITDEGRPIECD 218

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           GRV+G+   L +       +E A    + +  +  +       D    + W R     + 
Sbjct: 219 GRVAGNQVTLWLTDPVVRLAEEAGVVGQARDRAADLHGALNQLDRAPIVAWRRGSNLALE 278

Query: 217 WANISYKKNTET----EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
           W N +Y +  E     E I  Q  I  + +   E  K+    S     +    V+    G
Sbjct: 279 WVNQAYVEMVEAINFAEVIDNQIEIDPAFRPIAERAKEEAERSGRRGTD--GVVAVNVKG 336

Query: 273 NNKSYKIVRVLNSFGEA----GIAIDVSKEI----TVNDQLTHTYEILHNLTVAIAIFDQ 324
             +  +++ V           G+AID++++      +  Q       L  L+ A+A+FD 
Sbjct: 337 QRRLLRVIEVPMHGSVGASFGGMAIDITRQERAQLDLKRQQRAHKMTLDQLSTAVAVFDA 396

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
            + L++ N++F++LW +D++ L T PS+ ELL+ LR A KLP + ++  WK N   +Y  
Sbjct: 397 AQSLEYSNQAFLDLWGLDVSILRTRPSHGELLDLLRHAGKLPAKEDFNAWKTNELRLYTE 456

Query: 385 SE----------THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
            +             + W LP G+TL V    +  GG   +FE++T  + L++++ T + 
Sbjct: 457 VQGEDRSANEGAAPDEIWDLPEGKTLRVRHQRHGLGGVSVVFEDITETLRLQSRFQTQIS 516

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           VQ  T++ L++GVAVFG DGR+ L N +F +LW    ++L    H  +++   +    + 
Sbjct: 517 VQRATLNTLAQGVAVFGVDGRLALHNRSFETLWSFSRDQLDDRPHWDSLSEPMAERGRDV 576

Query: 495 DGW--DLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           D     L   I++ + +D    +   L L    +L  +  PLP+  T++TF+++TD+   
Sbjct: 577 DEGLARLKDRIVSLAHEDRVSRVGEELTLKDGRILLPATSPLPDGATLVTFLDITDARER 636

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L  +N+ L  AD IK  FV H+SY+LR+PL  IIGF +++++  +G LN +Q  Y  
Sbjct: 637 EKDLEIRNQILEDADRIKTRFVDHISYQLRNPLNTIIGFAEMMESEMVGPLNDRQKDYAA 696

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +S  LL+LVNDI+DLA +DAG + L    + + DLL       A K  ++ I +KV
Sbjct: 697 TILTASNHLLDLVNDIIDLAAIDAGRLGLELQEVDVRDLLESAAMFAALKAEDSEISLKV 756

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +G+  AD +RL Q+   +L+N   F+  G  V+L A RD       V++ G  + 
Sbjct: 757 DCPKDIGTLKADERRLKQVLFNLLANGFSFTQAGGQVVLGARRDGDAIRIWVEDTGRGVS 816

Query: 732 EDMCKSVFNRFVS-----NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                +VF+RF S      A  G           V SF+ LHGG V ++S +   T + C
Sbjct: 817 PQDQATVFDRFESAGPGAGAGLGLAL--------VNSFVELHGGFVRLASQEGAGTVVTC 868

Query: 787 RIP 789
            +P
Sbjct: 869 HLP 871


>gi|16127714|ref|NP_422278.1| tyrosine kinase DivL [Caulobacter crescentus CB15]
 gi|221236534|ref|YP_002518971.1| two-component sensor histidine kinase divL [Caulobacter crescentus
           NA1000]
 gi|21759092|sp|Q9RQQ9|DIVL_CAUCR RecName: Full=Sensor protein divL
 gi|13425208|gb|AAK25446.1| tyrosine kinase DivL [Caulobacter crescentus CB15]
 gi|220965707|gb|ACL97063.1| two-component sensor histidine kinase divL [Caulobacter crescentus
           NA1000]
          Length = 769

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 195/766 (25%), Positives = 348/766 (45%), Gaps = 29/766 (3%)

Query: 34  LLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP 93
           +   I   +    QR +L  ++    + L +          L   +  +  V  G+    
Sbjct: 15  VCLAISVALWSHGQRRNLEARIVALKTRLIQQGGSDDAPAWLDAFDTAVIAVEGGRANLV 74

Query: 94  EIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153
                L         D ++ +    L        ++    L + G+     A   +   +
Sbjct: 75  AGGEGLIACAKALGADAEVSAVVAALSDADP-NYAQKLTALFERGEPCVFEARGPHG-LV 132

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
            +EGR +G+ A+LR+  +D   S L              + F    DS+    W     G
Sbjct: 133 SVEGRAAGALAWLRLAPIDRADSGLPTA-----------ARFAAFVDSVVEPCWIAGADG 181

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
             +W N ++ +             G+S   F       ++ ++   +           G 
Sbjct: 182 QAIWGNAAFVRAVGAASAQAPALAGKS---FDRGADAVVVEAAGKGERREALRWINVEGR 238

Query: 274 NKSYKIVRVLNSFGEAG-IAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
            +++++       G  G    DV++   V D      E     L+++  A+AIF Q R L
Sbjct: 239 RRAFRLSAQPLDGGGVGVFCADVTEIEDVRDAFKKHVEAHDETLNHIAEAVAIFSQTRRL 298

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            +HN +F ELW ++ A+LA  P++ E+L+ LR   +LPE +++  WK    + Y+     
Sbjct: 299 SYHNTAFAELWGLEPAWLADRPTHGEVLDRLRQRRRLPETIDYAGWKAAELARYEDLGPQ 358

Query: 389 KD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            D  W LP+G+TL V+   +P GG + ++ ++T ++ L+ +YN L++VQ  T+D L++ V
Sbjct: 359 ADDLWDLPDGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLNDAV 418

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           AVFG DGR++L N AF + W    + L        +   C    ++   W      +   
Sbjct: 419 AVFGSDGRLRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLSFWRELKGRVADP 478

Query: 508 DDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           D + R    G +      ++ Y   PLP+  T++ F +VTD+   + AL +++ AL +A+
Sbjct: 479 DPQMRAPTSGEVRTSDSRIVLYQSRPLPDGATLIAFADVTDTRDLQSALADRSAALAEAE 538

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K  FV +VSYELR+PLT IIG+++LL+ +    ++ +   +V  + A++T L   ++D
Sbjct: 539 RLKRDFVGNVSYELRTPLTTIIGYSELLERA--DGISERGRNHVAAVRAAATQLARSIDD 596

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD+A +DAG M L    I ++DLL   ++          + + V  +  +G    D +R
Sbjct: 597 VLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGKR 656

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q    ++ NA+  +  G  V L A R  G+    V + G  +P  +   +F+RFV   
Sbjct: 657 LAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFV--- 713

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               R G GLGL++V++ + LHGG V++ S     +T  C +P  +
Sbjct: 714 -GRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQ 758


>gi|148555587|ref|YP_001263169.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148500777|gb|ABQ69031.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 798

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 166/766 (21%), Positives = 324/766 (42%), Gaps = 43/766 (5%)

Query: 59  YSFLSEICDQ-LSKYHSLLTENNC---------------LTIVWDGKDETPEIIGQLHQR 102
              +++   + + +  +LL                        W G    P  I ++  +
Sbjct: 36  RDVIAKTRARDIERQGALLASAPAVPFRVGLDGRIGADPRLAHWLGLPAPPTTIDEMAGQ 95

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE-TQNDCAIKIEGRVS- 160
               Q           +       L+       + G++F+ V      D  +   GR S 
Sbjct: 96  GIAGQD-------GGGISVVDAEGLAADIAAANQAGRAFERVLRLAGTDRVLLARGRPSP 148

Query: 161 ---GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
              G    + +         +   + + + +S+ +     L ++  F +WHR     +  
Sbjct: 149 PAIGDGVIVWLFDNSEAERAITRLSAEGQAVSDALDSCLALIEAAPFPMWHRGPDLKLAL 208

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEI----KKRMISSSALEKNFCETVSTLEHGN 273
            N +Y    E E    ++ +    +L         +   +++    +     V     G 
Sbjct: 209 VNSAYVAAVEGESA--EEVVTGGVELVDSADGRTPRATALAARDSGRIKTHVVPVTLGGQ 266

Query: 274 NKSYKIVRVL-NSFGEAGIAIDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYL 328
            ++ +IV V     G AG A D+        +L        E+   L+  +A F  +R L
Sbjct: 267 RRTMRIVDVPMGEHGVAGYAFDIQDLEQTRGELGRFQEAQRELFDRLSAGVAQFGPDRSL 326

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            F N+ F++ + +   +++ +P  D +LE +R   +LPE  ++  WK +  + + + +  
Sbjct: 327 IFCNQPFLQFFSLLPEWMSDHPEFDRVLERMRETQRLPEARDFPGWKADRRAWFNAVDAV 386

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           ++ W +P GQ L V+    P GG +  FE+ T QV L +  +TL++V+  T ++L E + 
Sbjct: 387 EENWTIPGGQHLRVVAQPLPNGGLLLFFEDRTEQVQLSSARDTLLRVRAATFENLFEAIG 446

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           VF  DGR+ + N +FR +W   +  L+    +  +    +    +     L   ++    
Sbjct: 447 VFASDGRLHIWNQSFRDIWGLSDADLAQNLRVDAMVELVAAKLADPSRAQLLRDLVRIAT 506

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +R++  G + L      +++++PLP+   + T +++T S   E AL  + +AL +AD++
Sbjct: 507 VDRQARTGRMALADGRYFDFAVVPLPDGNALFTLLDITASRGIEEALRGRADALEEADKL 566

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K +FV ++SYELR PLT+I GF +LL     G +     +YV+ I AS   L +LV D+L
Sbjct: 567 KTAFVANMSYELRVPLTSIAGFAELLDGGYAGEMPPIAQEYVKAILASVGRLGSLVEDVL 626

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL    AG + L+   + +  LL     +         +++ V  +  LG    D +RL 
Sbjct: 627 DLTQGAAGNLPLSEEQVDMGALLTGAVAAARPAAEGKPLQLLVDVEPGLGEIRGDPRRLR 686

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           QI   +L+NA+ ++     V ++   D+   ++ V + G  +       +F+ +      
Sbjct: 687 QIADHLLNNAITYTPPQGRVTIRVHGDDDMIVWVVSDTGPGMDAAQRAGIFDAYPRIDAS 746

Query: 749 GQRRG---VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               G   +G+GL +    +  HGG +++ S     TT+   +P +
Sbjct: 747 ND-EGKQLIGIGLPLTRQLVEAHGGSIALESEPGRGTTVTIHLPRR 791


>gi|167648789|ref|YP_001686452.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
 gi|167351219|gb|ABZ73954.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
          Length = 770

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 194/779 (24%), Positives = 349/779 (44%), Gaps = 36/779 (4%)

Query: 25  AVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTI 84
            +    AG +   +   +  + QR     +V +  +    + D+L              I
Sbjct: 6   LILAATAGAVCLALCATLWAMAQRRRFESQVAQLRTRNDTLEDRLMDSQGAAEAFETAVI 65

Query: 85  VW----DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
                        +++    + +D P     +++        H          L + G++
Sbjct: 66  AIHEHGANLISGEDVLADCARILDAPAQAEAVVAALVRADPDHA----HKLTALFERGEA 121

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
               A       + +EGR +G+ A+LR+ +     + L              + F    D
Sbjct: 122 CAFEARGPRGG-VTVEGRAAGTRAWLRLAAAAADETGLPGA-----------ARFAAFMD 169

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
            L    W     G   W N +Y +    +        G+S     + +      +  L +
Sbjct: 170 GLIEPAWMSGADGVPAWGNAAYLRVVGADSAGDAAREGKSIDRAADALAVEAAKAGELRE 229

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAG-IAIDVSKEITVNDQLTHTYE----ILHNL 315
                      G  ++ +        G  G  + DV++   + D L    E     L+++
Sbjct: 230 VVRW---VPIDGRRRALRFSAQPLEGGGVGVFSSDVTEVEDMRDALKRHVEAHDETLNHI 286

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
             A+AIF Q+R L FHN +F  LW ++ A+LA  P++ E+L+ LR   +LPE +++  WK
Sbjct: 287 ADAVAIFSQSRRLAFHNTAFANLWGLEPAWLADRPTHGEVLDRLRQRRRLPETVDYAKWK 346

Query: 376 ENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               + Y+      D  W LP+G+TL V+   +P GG + ++ ++T ++ L+ +YN L++
Sbjct: 347 AAELARYEDLGPQADEMWDLPDGRTLRVVRQPHPLGGMLLLYSDITGELRLKAQYNALIQ 406

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           VQ  T+D L++ VAVFG DGR++L N AF + W      L        +   C    ++ 
Sbjct: 407 VQQATLDKLNDAVAVFGSDGRLRLHNEAFETFWNVSAQALEAAVDFEGVVELCVPRLHDL 466

Query: 495 DGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             W      +   D + R    G      + ++ Y   PLP+  T++ F +VTD+   + 
Sbjct: 467 SFWRELKGRVADPDPQMRAPTSGETRTSDNRIIVYQSRPLPDGATLIAFADVTDTRDLQA 526

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL ++++AL +A+ +K  FV +VSYELR+PLT IIG+++LL+ +    L+ +   +V  +
Sbjct: 527 ALADRSQALTEAERLKRDFVGNVSYELRTPLTTIIGYSELLERA--DGLSERSRGHVASV 584

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +++T L   ++D+LD+A +DAG M L    I +  LL++ ++          + + V  
Sbjct: 585 RSAATQLARSIDDVLDMAQIDAGEMALEIGDIRVAGLLSDAQERSLKIAQIGGVTLSVEC 644

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +G    D++RL QI   ++ NA+  +     V L A R  G+    V + G  +P  
Sbjct: 645 DKDVGLIRGDQKRLSQILDHLIENALRQTPPDGVVTLSARRALGEVRLDVSDTGRGVPFH 704

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +   +F+RFV       R G GLGL++V++ + LHGG V++ S     +T  C +P  +
Sbjct: 705 VQAHIFDRFV----GRDRGGPGLGLALVKALVELHGGWVALESEPGAGSTFTCHLPETQ 759


>gi|302381632|ref|YP_003817455.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192260|gb|ADK99831.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 787

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 205/795 (25%), Positives = 356/795 (44%), Gaps = 35/795 (4%)

Query: 10  IGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQL 69
           +   I            F   AG     +       R + +L ++ +     L       
Sbjct: 2   LANRIGGWKRMDGAEIAFVATAGATGLAVAVSAWAWRLKRALTRRESIIEQGLRSAETVA 61

Query: 70  SKYHSLLTENNCLTIVWDGKDETPEIIGQLH----QRIDIPQTDTDLLSFENWLKFHHYI 125
               + +     + +    +D  P ++G        RI +   D+   +    L      
Sbjct: 62  VTRDAAVAAFGDVRLS-LVRDAMPVVVGDAAHIQAARIGLASDDSSDAAVG--LAEALNA 118

Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           +  +A   L  EGQ+FDL      D   +++GR  G  A++ +  L              
Sbjct: 119 RHPEAVRLLLDEGQAFDL-----RDGDWRVQGRPFGGEAWIGLSHLVPAERSDVVPGEAP 173

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
             L   +     + D+     W  D  G ++WAN ++        +   +  G       
Sbjct: 174 GGLGAGL-----IADASPSPTWVVDGQGQLVWANHAWLTEVRAPSLEEAREAGAVFDRGA 228

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFG--EAGIAIDVSKEITVN 302
           +++   +      ++ F  T      G  +++KI    L   G      AID+++     
Sbjct: 229 DQLAAEVSRMGVRQEGFRWTAG---DGRRRAWKIMAEPLAGVGGPVLVFAIDMTEAEETR 285

Query: 303 DQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           D L        E L++L  A+AIF  +R L FHN +F  L+ +D A+L   P++ ELL+ 
Sbjct: 286 DTLRRHVTAHDETLNHLADAVAIFGPSRKLAFHNTAFQTLFNLDPAWLNERPTHGELLDR 345

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           LR    LPE +++  WK      Y+++E    D+W LP+G+TL V+   +P GG + +F 
Sbjct: 346 LRQRRMLPEVIDYAGWKAQELEFYEATEAAPDDSWSLPDGRTLRVVRQPHPLGGILLIFS 405

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T ++ L +++N  ++VQ  T+D L++ VAVFG DGR++L N AF + W     RL   
Sbjct: 406 DITGELSLRSRFNAQLQVQTATLDKLNDAVAVFGSDGRLRLHNEAFETFWAVSAERLEAA 465

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNA 536
                +A  C     ++  W    A +   D E R ++QG        +  +   PLP+ 
Sbjct: 466 GDFDAVAELCKVALPDAALWLGLKARVADPDPESRVAVQGEGRTTDGRIAAWQTRPLPDG 525

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T++ F +VT     E+AL ++  AL+++  +K  FV  VSYELR+PLT I+G+++LL++
Sbjct: 526 ATLVAFSDVTARRELEQALAQREAALKESQALKREFVGSVSYELRTPLTTIVGYSELLES 585

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L  L  +  Q+   I  ++  L   ++D+LD+A +DAG M+L+   + + DL  E  +
Sbjct: 586 --LEGLPERSRQHAGAIRIAAGQLARSIDDVLDMAQIDAGEMELSVGDVRIRDLFAEAVE 643

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               ++      +K +    L    AD +RL+Q    +L NA    S+G  V LKA  + 
Sbjct: 644 RHRPRIEGRGATLKAMVPTDLPPVRADARRLMQAVDHLLENATRSVSEGGAVTLKAELNG 703

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +    V++ G  IP  +   VF+RFV    + +R G G+GL++V++ + LHGG   + S
Sbjct: 704 TEVRIRVEDTGRGIPYHLQALVFDRFV----KRERGGPGVGLALVKALVELHGGWAEVES 759

Query: 777 SDEGVTTINCRIPSK 791
                      +P +
Sbjct: 760 EPGKGAAFILHLPLE 774


>gi|197103684|ref|YP_002129061.1| tyrosine kinase DivL [Phenylobacterium zucineum HLK1]
 gi|196477104|gb|ACG76632.1| tyrosine kinase DivL [Phenylobacterium zucineum HLK1]
          Length = 771

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 196/765 (25%), Positives = 347/765 (45%), Gaps = 43/765 (5%)

Query: 40  PIILLIRQRNSLAKKVNETYSFLSEICDQLSKY--------HSLLTENNCLTIVWDGKDE 91
            ++  + QR +   ++    + +  +  +             +LL   +   ++  G++ 
Sbjct: 21  AVLWALAQRRADQARLEALAAQIRSMQIRAEAAQASAEAFDSALLAVEDGQALLASGEES 80

Query: 92  TPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC 151
                  L      PQ   + L         H  +L      L + G++     + +   
Sbjct: 81  LAVCAEALGLAAGEPQAVLNAL---MRADPDHARRL----RALFERGEACAFEVQGEAG- 132

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            + +EGR +G+ A+LR   L G+  E A      +        F     +     W    
Sbjct: 133 VVTVEGRAAGALAWLR---LSGMLGEDAGLPTAPR--------FAAFLHTRSCPAWIAAA 181

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G  +W N ++ +    E +      G +   F          ++ L +           
Sbjct: 182 DGSPVWVNAAWLRAVGAETLDEAARRGAA---FDRGADSVASEAANLGQRREAVRWLAFD 238

Query: 272 GNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
           G  +++ IV + L   G A    DV++   + +QL    E     L+ +  A+AIF + +
Sbjct: 239 GRRRAFHIVAQPLEGGGVAVWTDDVTEVEELREQLKRNIEAHDQTLNRIDDAVAIFGEGK 298

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            L FHN +F ELW I+ A+L   P++ E+L+ LR   +LPE  ++  WK      Y+   
Sbjct: 299 RLIFHNTAFAELWGIEPAWLEERPTHGEVLDRLRQRRRLPETADYAKWKAAELDRYEKLG 358

Query: 387 TH-KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
               D W LP+G+TL V+   +P GG + +F ++T ++ L+ +YN L++VQ  T+D LS+
Sbjct: 359 AEPDDLWSLPDGRTLRVVRQPHPMGGMLVLFADITGELKLKAQYNALIQVQQATLDKLSD 418

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            VAVFG DGR++L N +F   W    ++L        +   C    ++   W      + 
Sbjct: 419 AVAVFGSDGRLRLHNESFERFWGIGHDQLEA-ADFEAVVQLCVPKLHDLGFWRELKGRVG 477

Query: 506 SFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             D   R  + G      D ++EY   PLP+  T++ F +VTD+ R E AL ++  AL +
Sbjct: 478 DPDPGARTPMTGEARTSDDRIVEYRSRPLPDGATLIAFTDVTDARRLESALADREAALSE 537

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ +K  FV +VSYELR+PLT IIG+++LL+ S   +L  +   +   + +++T L   +
Sbjct: 538 AERLKRDFVGNVSYELRTPLTTIIGYSELLEHSG-DALPERARAHAASVKSAATQLARSI 596

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +D+LD+A +DA  M L+ + + + +L+  V            + + +     +G    D 
Sbjct: 597 DDVLDMAQIDADEMALDLADVNVAELMIGVAGRWLKPAEAARVSLVIERPDDIGLIRGDA 656

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +RL QI   ++ NA+  +  G T+ L A +  G+    V + G  IP  +   +F+RF+ 
Sbjct: 657 KRLAQILDHLVENALTQTPAGGTITLAARKALGEIQLQVSDTGRGIPFHVQAHIFDRFI- 715

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +R G GLGL++V++   LHGG V++ S         C +P
Sbjct: 716 ---GRERGGPGLGLALVKALTELHGGWVALESEPGAGARFTCHLP 757


>gi|326387830|ref|ZP_08209436.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207876|gb|EGD58687.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 785

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 177/746 (23%), Positives = 318/746 (42%), Gaps = 28/746 (3%)

Query: 69  LSKYHSLLTENNCLTIVW--DGKDETPEIIGQLHQRIDIPQTDTDLLSF----ENWLKFH 122
             +   ++ E   + +V   DG+ E P  +        +P   ++L +     E     +
Sbjct: 43  ARRLGRMVEEAPAMPMVVRVDGRIEGPARLAGWFGFETMPGYLSELEAGAHGGERGFDEY 102

Query: 123 HYIKLSKATEKLRKEGQSFDLVAE-TQNDCAIKIEGRVS------GSCAFLRILSLDGIY 175
               LS A  + +K    F L      +  A+ + G ++         A +         
Sbjct: 103 QLSLLSDAVRRTQKTAAPFRLNLTPCGSKRALGVRGHLADPQISPAGAALVWFFDFTESE 162

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            EL     +        +    L ++    +W R     +   N +Y +         + 
Sbjct: 163 EELRHLRAETAGARADFAGLSGLIEAAPLPMWFRGPDLALRLVNTAYVRAVGAR--TGED 220

Query: 236 AIGESRKLFKE----EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-NSFGEAG 290
            + +  +L +       +     + A        VS    G  +S +++ +     G AG
Sbjct: 221 VVLDGVELVETVDGATPRDIARLAQARHMPIERVVSATIGGQRRSLRVIDLPLGDDGVAG 280

Query: 291 IAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
            A+D+ +   +  Q         ++L  ++  IA FD+ R L F N+ F+ L+ I  A++
Sbjct: 281 YAVDIEEMEELTRQFRRFRAAQRQMLDTMSAGIAQFDERRNLVFVNQPFLRLFNIPQAWV 340

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              P  D +L+ +R A +LPE  ++  W+      + S E  ++ W L +G  L V+   
Sbjct: 341 VDTPPFDRVLDRMRDAGRLPEVRDFPEWRRERQGWFLSREAREEPWLLSDGTHLRVVAQP 400

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            P GG + MFE+ T Q+ L    +TL++ +  T D+L E +A FGPD R++L N  F + 
Sbjct: 401 MPDGGLLMMFEDRTEQLQLSATRDTLLRSRTATFDNLFESLAAFGPDSRVQLWNRRFVAD 460

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           W  +E  L        + A  +              +I +   ER+   G LEL     L
Sbjct: 461 WGLDEEFLDSHPRADALLARMAVKLRRPGQVATIGQVIEAATLERRQQSGRLELADGRYL 520

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            ++ +PLP+   +LT +++TDS +AE  L E+N AL +AD +K  F+ ++SYE R+PLT+
Sbjct: 521 AFAGVPLPDGNGLLTILDITDSQKAETMLRERNAALLEADAVKTRFIANMSYEFRTPLTS 580

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I GF ++L++   G L  +  +YV  I  S   L   +  +LDL+  +AG + +    + 
Sbjct: 581 IGGFAEMLQSGLAGDLPERAKEYVGAILTSVKRLGEQIETVLDLSQGEAGTLPIAREAVA 640

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  LL+EV       + E  + + +     +G+   D +RL + F  ++ NA+  + +G 
Sbjct: 641 IFPLLSEVVHERDEALTEGGLTLDLRGTEAVGTVTGDPRRLRRAFGHLVDNAIAATGQGG 700

Query: 707 TVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFN--RFVSNAHRGQRRGVGLGLSIVES 763
            ++++  R         V +NG  +               S+    +RR  GLGL +V  
Sbjct: 701 RILVECTRRPDRKVQVVVSDNGRGMEPAQLARALEGLAISSDGRSIERR-SGLGLPLVRQ 759

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            I  HGG + I S     T+    +P
Sbjct: 760 LIEAHGGSIEIMSEPGQGTSAVVVLP 785


>gi|254419079|ref|ZP_05032803.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196185256|gb|EDX80232.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 782

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 205/762 (26%), Positives = 360/762 (47%), Gaps = 40/762 (5%)

Query: 43  LLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD-------GKDETPEI 95
             +R R  L           +     LS++ S+L   + +++               PE+
Sbjct: 24  WALRLRARLNAATALAEGERAAAVADLSRHDSMLRAFDDVSLALTPEGEASGAPIGPPEL 83

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           I +L +          L   +       Y+ L    + L   G++F+ + E  +    +I
Sbjct: 84  IDRLTEASGDTAGHALLTRLKT-----SYVVL---IDGLVTAGKAFEGLIELGDVEPWRI 135

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           EGRV+G  A+LR+     +    A+ T          S   +L D+     W  D AG +
Sbjct: 136 EGRVAGGGAWLRLSPASRVMLTGADATE---------SGLALLGDASPIPTWVVDGAGKL 186

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            WAN  +      + +   +  G S     + +          ++ F     T   G+ +
Sbjct: 187 AWANRVWLHEIGADSVETARNKGLSFDRGADALVAEAGRLGVRQEGFRW---TTGGGHRR 243

Query: 276 SYKIVRVLNSFGEA-GIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQF 330
           +++I+      G     AI+V++     D L        E L++L  A+AIF  ++ L F
Sbjct: 244 AWRIIAEPAGGGAVTAFAIEVTEAEETRDTLRRHVDAHDETLNHLADAVAIFGPSKRLAF 303

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-HK 389
           HN +F  L++ID A+L   P++ ELL+ LR   +LPE +++  WK      Y +S+    
Sbjct: 304 HNTAFQTLFDIDPAWLDERPTHAELLDRLRQRRRLPEVMDYAGWKARELEFYGASQASPD 363

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           D+W LP+G+TL V+   +P GG + +F ++T +++L +++N  ++VQ  T+D L++ VAV
Sbjct: 364 DSWSLPDGRTLRVVRQPHPLGGILLIFSDITDELNLRSRFNAQIQVQTATLDKLNDAVAV 423

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           FG DGR++L N AF + WK    +++  T    +A  C     +   W    A +   D 
Sbjct: 424 FGSDGRLRLHNEAFETFWKLSAEQIAGSTDFDALAELCKAVLPDPALWLGLKARVADPDP 483

Query: 510 E-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           E R ++ G    +   +  +   PLP+  T++ F ++T     E+AL ++ +AL ++  +
Sbjct: 484 ESRVAISGEGRTIDGRIAAWQTRPLPDGATLVAFSDITARRGLEQALVQREQALAESQAL 543

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  FV  VSYELR+PLT I+G+++LL+T  +G L  +  Q+   I  +++ L   ++D+L
Sbjct: 544 KREFVGSVSYELRTPLTTIVGYSELLET--MGDLPERGRQHAGAIRVAASQLARSIDDVL 601

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+A +DAG M+L+   + + DLL +  + +  K+      + V     L    AD  R+ 
Sbjct: 602 DMAQIDAGEMELSLGDVRVQDLLEQAAERVRAKVEGRGATLTVTCPPGLKPIRADDHRIG 661

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q  + +L NA    S+G  V L A     +   +V ++G  IP  +   VF+RFV     
Sbjct: 662 QALNHLLENAARAVSEGGAVTLSAEMAPSEMRVTVSDSGRGIPYHLQAHVFDRFVR---- 717

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +R G G+GL++V++ + LHGG   + S           +P 
Sbjct: 718 RERGGPGVGLALVKALVELHGGWAEVESEPGKGAAFILHLPL 759


>gi|332185686|ref|ZP_08387433.1| his Kinase A domain protein [Sphingomonas sp. S17]
 gi|332014044|gb|EGI56102.1| his Kinase A domain protein [Sphingomonas sp. S17]
          Length = 802

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 190/800 (23%), Positives = 353/800 (44%), Gaps = 35/800 (4%)

Query: 13  GIEICTLFSCKIAVFGTIAGMLLTTIIPIILL-IRQRNSLAKKVNETYSFLSEICDQLSK 71
            + + T+ S +  + G  A +L+     ++ L +R R+               I  +  +
Sbjct: 10  PLRMITINSVEAVLLGAGACVLILVGTLLLFLGLRARSEAGA-----------IRREHER 58

Query: 72  YHSLLTENNC--LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSK 129
              LL       + +  DG+ E P  +      +D  +   ++   +N L       L+ 
Sbjct: 59  LDGLLRAGPAQAMLVCADGRIEMPARLADWLGLVDPARFLEEMTGDQNGLAAEDAALLAA 118

Query: 130 ATEKLRKEGQSFDLVAETQ-NDCAIKIEG------RVSGSCAFLRILSLDGIYSELAETT 182
                +K G+ F  +   Q +   + +EG      + +     +  L +     E+A   
Sbjct: 119 DLNAAQKTGRRFRRIVRPQGSARTLVLEGARAPQDQGASGAVVVWALDMTEAQDEIARLD 178

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
            + ++L +       L ++    +W+R     +   N +Y    E         +    +
Sbjct: 179 AETRRLGDAFEALTGLIEAAPLPMWYRGTDLRLAMVNTAYVDAVEGRDA--ADVVARGLE 236

Query: 243 LFKEEIKKRMISSSA----LEKNFCETVSTLEHGNNKSYKIVRVL-NSFGEAGIAIDVSK 297
           L +   +   ++ +A      +   + +     G  ++ +I  V   + G AG A+D+  
Sbjct: 237 LVEGSGRGGPLAGAAAARDQGRPHEQVLPATIDGARRALRIFDVPLTTGGIAGFAVDIED 296

Query: 298 EITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
                       E    +L  L+ A+A F  +R L F N+ F  ++ +   +LA +P  D
Sbjct: 297 LEQSRAGAKRFAEAQRAMLDRLSAAVAHFGPDRELVFCNQPFRRMFAMRAEWLADHPEFD 356

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYK-SSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            +LE +R AN+ PE  ++  WK      ++ +    ++ WHLP G  L V+    P GG 
Sbjct: 357 RVLERMREANRSPEVRDFPGWKAERIGWFRQAGGGIEEQWHLPGGTHLRVVAQPLPDGGL 416

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +FE+ T +V L +  +TL++V+  T D+L E + VF  DGR++L N  FR LW  EE 
Sbjct: 417 LLIFEDRTEEVQLASARDTLLRVRTATFDNLFEALGVFAADGRLQLWNNRFRVLWGLEEE 476

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            LS    +   A   +      +   L   ++ S   ER+   G + +      E++ +P
Sbjct: 477 FLSSHPRVDVFADKVAGRLATPNRSALIVDLVRSATIERQQRGGRVAMADGRHYEFAGVP 536

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LP+   ++T +++TDS RAE+AL ++  AL  AD++K +FV ++SYELR+PLT+I GF +
Sbjct: 537 LPDGNALITLLDITDSRRAEQALRDRANALEAADKVKTAFVANMSYELRTPLTSISGFAE 596

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L     G L    + YVE I  S+  L  LV+D+LDL     G  ++    + L  +  
Sbjct: 597 MLHGGFAGPLPETANSYVEAILESTERLGLLVDDVLDLTRGGEGA-EIEREDVDLARVAR 655

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
               +I   +    +   V     +G    DR+RL ++   +L +A++ + +   ++L A
Sbjct: 656 TAADTIRPVVGRRRLDFAVEIQRSVGRVTGDRRRLQEVIEHLLRHAVEQTPESGRILLHA 715

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGH 771
             D+G     V ++G  +  +     F+RF     +    R +GLGL + + F+  HGG 
Sbjct: 716 DGDSGRARIIVSDDGQGMNAEAVAHAFDRFAEPEIKATGERALGLGLPLAKQFVEAHGGT 775

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S     T +   +P +
Sbjct: 776 ITLLSEPGQGTLVTVELPRR 795


>gi|329847598|ref|ZP_08262626.1| sensor protein divL [Asticcacaulis biprosthecum C19]
 gi|328842661|gb|EGF92230.1| sensor protein divL [Asticcacaulis biprosthecum C19]
          Length = 805

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 202/772 (26%), Positives = 366/772 (47%), Gaps = 51/772 (6%)

Query: 46  RQRNSLAKKVNETYSFL-------SEICDQLSKY-HSLLTEN-NCLTIVWDGKDETPEII 96
           R R++LAK  +     L       SE+    S +  + L    + + +VW G D      
Sbjct: 27  RTRSTLAKARDLLKGDLFVKETMLSELDAATSAFDEAFLAVEGDAVRLVW-GDDTLKACA 85

Query: 97  GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG--QSFD--------LVAE 146
             L  R         L+              SK  + L  EG    F+        L++ 
Sbjct: 86  EALGVRTTNDAERAPLVVEALGKTSMDA---SKGLKALIAEGKTCRFEVFADNIPGLISA 142

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
                 + I+G+ SG+ A++R+ ++ G    L+               F  + + L    
Sbjct: 143 KPAGLTLVIDGKASGATAWIRL-AIAGAKQSLSSGP------------FAQMAEHLPAPC 189

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           W   + G ++WAN ++ +  E + +      G +     + +      S A  + F    
Sbjct: 190 WICARDGRMVWANEAWLRAAEVQDLEQALRDGATLDRSADALVSDATESRARREGFRW-- 247

Query: 267 STLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAI 321
                G  ++++++   LN       A+DV++     + L        E L +L  A+AI
Sbjct: 248 -LTISGQRRAFQVIAEPLNDAYTCAYAVDVTEAEDSREALKRHAKAHDETLDSLEDAVAI 306

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           F   R L FHNR+F +LWE++ A+LA  P++ E L+ LR   +LPE  ++  +K      
Sbjct: 307 FGPERQLTFHNRAFEKLWELEPAWLAERPTHAEWLDRLRQKRRLPETSDYAGFKGRESEF 366

Query: 382 YKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
           +  + T  D  W LP+G++L V+   +P GG + +F + T ++ L+ ++N L++VQ  T+
Sbjct: 367 FGLTHTADDEMWSLPDGRSLRVVRQPHPLGGLLILFSDKTGELKLKAQFNALIQVQKSTL 426

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D L+E V+V+G DGR++L N AF   W    + ++      +IA  C    ++   W   
Sbjct: 427 DQLNEAVSVYGSDGRLRLRNQAFDKFWHLRSDDIAAVMDFAHIAELCLPLVHDRGFWAEL 486

Query: 501 AAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A +T  D   R   QG ++L    + ++   PLP+  T++ F ++T +   E+A+ +++
Sbjct: 487 KARVTDTDPLARAPQQGEIKLSDSRLAQWRTQPLPDGATLVVFSDITATRSLEKAIEDRD 546

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EAL ++  +K  FV +VSYELR+PLT I+G+ DLL    +G  ++KQ  Y++ I  ++  
Sbjct: 547 EALNESVRLKREFVANVSYELRTPLTTIVGYADLLHAQNIGH-DTKQKAYLDSIQTAAQE 605

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L   ++D+LD+A +DAG M ++ + I L D++ E     A      ++        + G 
Sbjct: 606 LARSIDDVLDMAQIDAGEMSVSTADIRLLDIVAEAAARQADAFKSKSVHFDYTGVRESGL 665

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D +RL Q    +L +A+  ++   +V L A++D  + +  V  +G  IP  +   +F
Sbjct: 666 VHVDGRRLGQCLDHLLGHAVRNATAAGSVSLNASKDGDNLLLEVAYSGRGIPYHVQAHIF 725

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +R++      +R G GLGL++V++ + LHGG +++ S      +   R+P +
Sbjct: 726 DRYI----GRERGGPGLGLALVKALVELHGGWITLESEPNEGASFKIRLPKQ 773


>gi|315497262|ref|YP_004086066.1| pas/pac sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315415274|gb|ADU11915.1| PAS/PAC sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 857

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 191/780 (24%), Positives = 346/780 (44%), Gaps = 53/780 (6%)

Query: 40  PIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQL 99
             +L  R R  L K      S L      L +  +     +   +  +G+     + G  
Sbjct: 21  TTVLAWRLRARLTKLSEGYKSRLDVQHTVLGELDAATLAFDEAFVAIEGETVR-LVWGDE 79

Query: 100 HQRIDIPQTDTDLLSFENWLKFH-------HYIKLSKATEKLRKEGQSFDLVAET----- 147
             +                +             + ++A ++L  EGQ       T     
Sbjct: 80  TLKTIADAFRIPFSEE---VAPRVIEGLAGSSKEAAEALKRLIAEGQPCRFEVFTEAPRS 136

Query: 148 -----QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
                 +   + +EGR +G+ A++R+     I SE    +            F  + D +
Sbjct: 137 LMGSKTSGLTLLVEGRATGATAWVRL----AIASEHTSLSS---------GPFARMADLI 183

Query: 203 DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
               W     G ++WAN ++ K  + + +   ++         E +           + F
Sbjct: 184 PAPCWVVR-DGQLVWANAAWLKAVDAQNVEQARSEQLGLDRSAEALVVEAAEQHVRREGF 242

Query: 263 CETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTV 317
                   HG  +++++V   L        A+DV++     + L    +     L +L  
Sbjct: 243 RW---LTIHGQRRAFQVVAEPLGDAYVCAYALDVTESEESREALKRHAKAHDDTLDHLED 299

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           A+AIF   + L FHNR+F  LW+++ A+LA  P++ ELL+ LR   KLPE  ++ TWK  
Sbjct: 300 AVAIFGPEKRLTFHNRAFEILWDLEPAWLAERPTHGELLDRLRQKRKLPETSDFVTWKAQ 359

Query: 378 IFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
               Y  SE    + W LPNG++L V+   +P GG + +F + T ++ L+ ++N+L++VQ
Sbjct: 360 ELEFYGLSEAAPDEMWSLPNGRSLRVVRQPHPLGGLLLLFSDKTGELTLKAQFNSLIQVQ 419

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
             T+D L++ V+VFG DGR++L N AF + W    + L+  +    + A C    ++   
Sbjct: 420 RATLDQLTDAVSVFGSDGRLRLRNAAFDAFWNLSPDDLAVNSDFGQLTALCLPLVHDRGF 479

Query: 497 WDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           W    A +T  D   R    G +      + ++   PLP+  T++ F ++TD    E A+
Sbjct: 480 WAELKARVTDIDPLARAPQLGEVRTSDGRLAQWRTQPLPDGATLVAFSDITDRRALEEAI 539

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS----KLGSLNSKQSQYVE 611
            +++ AL ++  +K  FV +VSYELR+PLT I+G+ DLL+      +      ++  ++ 
Sbjct: 540 EQRDVALTESVRLKRDFVANVSYELRTPLTTIVGYADLLQRQANAAEADPAEIRRRGFLN 599

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I A+S  L   ++D+LD+A +DAG M L+ S   L+  +       A  +    IR   
Sbjct: 600 AIQAASQELARSIDDVLDMAQIDAGEMSLSPSDFNLSRTVAAALGRQADTLSAKGIRFDY 659

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +         AD+QRL Q+   +L  A+  +++   + +++ ++       +   G  IP
Sbjct: 660 VGLDTRALIRADQQRLGQVLDHLLDYALRNAAQEGQITIRSRKEGDTLTLEIGYTGRGIP 719

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 +F+RFV      +R G GLGL++V++ + LH G +++ S  +   T    +P +
Sbjct: 720 YHTQAHIFDRFV----GRERGGPGLGLALVKALVELHDGWITLESEPQSGATFALHLPHQ 775


>gi|103485658|ref|YP_615219.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis
           alaskensis RB2256]
 gi|98975735|gb|ABF51886.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis
           alaskensis RB2256]
          Length = 787

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 181/794 (22%), Positives = 331/794 (41%), Gaps = 44/794 (5%)

Query: 28  GTIAGMLLTTI--IPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV 85
           GT++  LL  +     + L+        +        +    Q  +  SL+  +  L ++
Sbjct: 3   GTLSPTLLFALGLFAALWLL-AGLWATLRGIAMQRRAAFAGGQAERLASLVEASPQLPVI 61

Query: 86  --WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
              D + E  + +G+       P+   +L    + L    +  L +A    ++  + F L
Sbjct: 62  VRADWRIEASDRLGRWLGLDRGPRNFDELRGIGSGLDAASHDLLRQAILGAQRGAKPFQL 121

Query: 144 VAETQ-NDCAIKIEGRVS------GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
             + + +   I ++G  +           L +         LA    +  +         
Sbjct: 122 SLKPEGSHRTIIVQGAAAPQAVGGAGSVLLWLSDATEGQQALAHARAERDEALAAFEALS 181

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            L ++  F +W RD    +   N +Y +  E         I    +L +         ++
Sbjct: 182 GLIEAAPFPMWFRDTDLQLALVNAAYVRAVEARSAT--AVIDGGIELCETVAGVSAADAA 239

Query: 257 ALEKNF----CETVSTLEHGNNKSYKIVRVLNS------FGEAGIAIDVSKEITVNDQLT 306
              +        T+     G  +  ++V V  +       G AG AID+ +  +      
Sbjct: 240 DAARAAGSAQQRTIPVTIEGERRIMRVVDVPLAPEGGRMIGIAGYAIDIQELESERGAHR 299

Query: 307 HT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                  E+L  L+ A+A F  ++ L F N  F  L+ +D   +        LL+  R  
Sbjct: 300 RFVDTQRELLDRLSAAVAQFGPDQGLAFANLPFRRLFGLDADDVGEARPFARLLDAWRER 359

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
            + PE  ++  W++     +  +E  ++ W L +G  LHV+    P GG + + E+ T Q
Sbjct: 360 GRTPEVRDYPEWRQAHVDWFARAEASEEDWRLRDGTHLHVVAQPTPDGGLLLIAEDKTEQ 419

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           V L    +TL++V+  T D+L E VAVF PDGR+ L N  FR LW  +E  L+    +  
Sbjct: 420 VQLAGARDTLLRVRTATFDNLFEAVAVFAPDGRLHLWNQRFRRLWGVDEPTLAAHPRVDV 479

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +    +    + +   +   +I +   ER+   G +        +++ IPLP+   +L  
Sbjct: 480 LMGGLADRLAKPNQISVVQEVIRAATLERQQRVGEIRFADGRHFDFASIPLPDGNALLIM 539

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T S + E AL E+NEAL  AD+ K +F+  +SYELR+PLT+I GF ++L+    G L
Sbjct: 540 LDITASRKMEGALRERNEALEAADKAKTAFLSRMSYELRTPLTSIGGFGEMLQAGYAGKL 599

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q  YV+ I  S  +L   ++++LDLA  +AG + +  + + +  LL +         
Sbjct: 600 GDQQRAYVDAIMDSVAVLGRQIDNVLDLAQGEAGTLAIERAPVDVRALLEKALDDTRPFA 659

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK----GSTVILKAARDNGD 718
               + +       LG+   D  RL ++ + +L NA+ F++        V+L A  D   
Sbjct: 660 DAEKVELVGNIAADLGTIEGDAPRLSRLVAGLLDNAVRFTAPARKSAGRVLLHADGDKRG 719

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSIS 775
               V +NG  +PE           +   +GQ+ G    G+GL++    +  HGG + + 
Sbjct: 720 IDIIVSDNGPGMPEA---------AAAVAKGQQAGTDTGGIGLALARQLVAAHGGTMEVV 770

Query: 776 SSDEGVTTINCRIP 789
           S     T +   +P
Sbjct: 771 SEAGQGTLVRVSLP 784


>gi|83594772|ref|YP_428524.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577686|gb|ABC24237.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 801

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/819 (26%), Positives = 349/819 (42%), Gaps = 49/819 (5%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60
           M +  +        +I TL          + G L          +R R++  + +   + 
Sbjct: 1   MFSDPSFADSVLPTQIGTLIVLVAGTVAVLMGGLA---------LRWRSAWLRSLESRHQ 51

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVW--DGKDETPEIIGQ-LHQRIDIPQT-DTDLLSFE 116
             +E   +  +   L T ++   + W  DG     E   + L   + +P   + +L    
Sbjct: 52  --AEYEAEALR-EILATASDGYYL-WALDGPLRGREFCSRRLAVLLRLPSGVNAELKEII 107

Query: 117 NWLKFHHYIKLSKATEKLRKEGQSF----DLVAETQNDCAIKIEGRVSGSCAF---LRIL 169
                     L      LR+EG+ F     L A  +    + I        A    L + 
Sbjct: 108 GVFAEGDAQALEGMIAVLRREGRGFVLDLLLAASGRRVRTVGIRANAGDGHALADLLWMR 167

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            +            + + L       + + D+L   +W RD +  I   N +  +  +  
Sbjct: 168 DVTEETRVGDVQGRRAQALQAERDRLRAVVDALPAPIWTRDDSLAIGDGNTALARALDLG 227

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV----STLEHGNNKSYKIVRVLNS 285
                 A+   R+L      + M + +A  +            +  G  K  +I     S
Sbjct: 228 SA--GDALTARRELAPGATGQEMRALAARSRAAGRPARARFHAVLDGERKLLEITETPLS 285

Query: 286 FG-----EAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            G       GIA D++    V  +L        E+L  L  AIAIF  +  L FHN +F 
Sbjct: 286 EGPLRGHTVGIAQDITPIEEVESRLERETEAHAEVLERLGSAIAIFGGDTRLSFHNAAFA 345

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLP 395
            LW ++  +L   PS  + LE  R   +LPE  ++  +K      + K     +D  HLP
Sbjct: 346 SLWGLESDWLNGEPSYGDFLERQRENRRLPEVADFPAYKAGELGYFTKLLRPREDILHLP 405

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +G TL  ++  +P GG I  FE++T  + LE  YN L  VQ ETIDHL E VAVFG +GR
Sbjct: 406 DGATLRRVIAPHPLGGLITTFEDVTDSLALERSYNQLTAVQRETIDHLHEAVAVFGANGR 465

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           ++LSNPAF  LW        P      +             W+ F   +   D+      
Sbjct: 466 LRLSNPAFSQLWSGAGTDSEPQA--AALLDDMEAAMIADGAWETFRRRLCVRDESAGPRN 523

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G L       L+Y+ +PLP+   +L+ +++TD VR E+AL+E+ EALR AD +K+ F+ +
Sbjct: 524 GRLVRRDGRHLDYATVPLPDGGLLLSILDITDRVRVEQALSERTEALRAADMMKSEFIAN 583

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VSYELR+PLT I GF+++L  +  G LN++Q +Y E I+ +S  ++ L+++I DL ++ A
Sbjct: 584 VSYELRTPLTTISGFSEILSGAYYGELNTRQREYAEVITETSRQVVRLIDEITDLVSMQA 643

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G + L      ++  L  V            + +        G  VAD  R+ QI   ++
Sbjct: 644 GKLALELDAFDIHAALAAVLALGRESARRRGVTLNFDCPPDAGWMVADETRIKQILFHLM 703

Query: 696 SNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           SNA+  +  G  V L   R    D G  +F+V + G  + E +    F  F         
Sbjct: 704 SNAITGTDAGGQVTLAVQREDTPDGGTMVFTVADTGRGMDEILQTRAFESFAKGPRAD-- 761

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGL++V  F+ LHGG V + S     TT+  RIP+
Sbjct: 762 -GAGLGLALVRRFVELHGGAVDLVSVPGEGTTVTVRIPT 799


>gi|296283894|ref|ZP_06861892.1| two-component signal transduction histidine kinase [Citromicrobium
           bathyomarinum JL354]
          Length = 784

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 170/759 (22%), Positives = 326/759 (42%), Gaps = 34/759 (4%)

Query: 59  YSFLSEICDQ-LSKYHSLLTENNC--LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
            S  +E   +   +   LL E     L +  DG+ E  + +        +PQ  ++L  +
Sbjct: 32  RSRGAEAARRNAKRMARLLDEAPAAALVVRSDGRLEGSDRLAHWLGFDQLPQFISELAKY 91

Query: 116 -ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ-NDCAIKIEGRVS------GSCAFLR 167
            +  L      +L++     +K    F +      +  ++ + G ++         A + 
Sbjct: 92  PDRGLSREQLDELTQKVRLAQKSAAPFRMAVTLPGSSRSLALRGSLADPQVSPAGAALIW 151

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +        EL     +  +  +  +    L ++    +W R+   ++   N +Y     
Sbjct: 152 VFDFSESELELGRMRKEAARARSDFAALVGLIEAAPTPMWFRNADMELQLVNKAYVAAVG 211

Query: 228 TEGIVFQKAIGESRKLF---KEEIKKRMISSSALEKNFCETVSTL--EHGNNKSYKIVRV 282
            +    Q  I +  +L      E    +   +A      E V ++    G  + +++  +
Sbjct: 212 ADDA--QSVIDQQIELVEAVDGEPPAEIARQAAESGAPIERVVSVTNVDGMRRRFRVSDL 269

Query: 283 L-NSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                G AG A+D+ ++  +  +     E    +L  L+V +A FD  R L F N+ F  
Sbjct: 270 PLAEEGVAGYAVDIQEQEDLAREHRAYREAQRSMLDRLSVGVAQFDDQRRLTFANQPFRR 329

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           L  +           + LL   R   +LPE  ++ +W+++  + +++ +T ++ W L +G
Sbjct: 330 LLGVRPGASGLGTPFERLLSDARDEGRLPEVRDFPSWRKDRMAWFEAGDTQEEDWPLSDG 389

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
             L V+    P GG   + E+ T Q+ L    +TL++ +   +D L E +AVF PDGR++
Sbjct: 390 THLQVVGQPMPDGGLALILEDRTEQLSLAANRDTLLRTRTAMLDSLFEALAVFAPDGRLQ 449

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L N +F   W  E + L     +  +                   +I S   +RK   G 
Sbjct: 450 LWNHSFPETWGLEPDALDEHPSVDALLGLIQPNLARPKQAKGVGEVIRSATLDRKERAGR 509

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L+L     +E++ IPLP+   +LT ++VT + +AE AL ++ EAL +AD++K  F+ ++S
Sbjct: 510 LQLADGRTIEFAGIPLPDGNGLLTTLDVTANEQAETALRDRAEALEQADKVKTRFLANMS 569

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           YE R+PLT+I GF +LL+    G L+    +YV  I  S   L + V ++LDL+  +AG+
Sbjct: 570 YEFRTPLTSIGGFAELLQAEVAGPLSDGAKEYVAAIIESVARLTDQVENVLDLSQSEAGL 629

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +    + L   +  V ++    +   +I + +     L    AD ++L +   ++L N
Sbjct: 630 LPIARRELSLLAFVTGVARAREDVIETKSITLDLRGSQAL-KLQADPRQLGRAIGQLLDN 688

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV--- 754
           A++ S +   +++  A+ +G     + +NG  + E+         +         G    
Sbjct: 689 AIEASGEKGRILVDLAKQDGGVRIVISDNGRGMDENELALA----LDGMRSASEGGAEAT 744

Query: 755 ---GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              GLGL +    I  HGG   I S     T+++  +P 
Sbjct: 745 RRQGLGLPLARQLIEAHGGRFDIHSEKRIGTSVSLWLPL 783


>gi|149184288|ref|ZP_01862606.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. SD-21]
 gi|148831608|gb|EDL50041.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. SD-21]
          Length = 780

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 157/777 (20%), Positives = 315/777 (40%), Gaps = 34/777 (4%)

Query: 36  TTIIP--IILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL--TIVWDGKDE 91
             +     + L+ +     +K     +          +   ++ E   +   +  DG+ E
Sbjct: 15  FALWTGGALWLMFKAARDTQKAKAHRTI-------ARRLSRMVEEGPAIPLLVRVDGRIE 67

Query: 92  TPEIIGQLHQRIDIPQTDTDLL-SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150
            P+   +      +P+  T+L       L      +LS    + +K  + F +       
Sbjct: 68  APDRFARWVGLDKVPEYLTELAGREGQGLSEEQVERLSAHVRRTQKSAKPFKMALRPPGS 127

Query: 151 C-AIKIEGRVSG------SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
             ++ + G ++         A + +        ELA    +  +  +       L ++  
Sbjct: 128 RKSLALRGALADPAVSPSGAALIWVFDFTETEDELARLGEEAARARDDFGALVGLIEAAP 187

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             +W R     +   N +Y +          + + E  +L +    +     +    +  
Sbjct: 188 MPMWFRGADMQLRLVNKAYVEAVGANSAD--QVVAEQIELVEAVGGRSAAQVAQQAADRR 245

Query: 264 ETV----STLEHGNNKSYKIVRVLN-SFGEAGIAIDVSKEITVNDQLTHTYE----ILHN 314
           + +    +       ++ ++  +     G AG AID+ +      +     E    +L  
Sbjct: 246 QPIERILTATIDNARRTVRVTDLPLVGEGIAGYAIDIEEMEEQAREFRAFREAQRSMLDQ 305

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           L++ +A FD    + F N+ F  ++ +    ++     D++L   R   ++PE  ++ TW
Sbjct: 306 LSIGVAQFDAQHRMTFANQPFHRVFALPPGVVSERIRFDQMLMIARENGRIPEVRDFPTW 365

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           ++ +   +   E  +  W LP+   L ++    P GG + + E+ T Q+ L    +TL++
Sbjct: 366 RKELAEWFLKDEPEEHQWPLPDSTHLRLVSQPLPDGGLVLIAEDRTEQLALSATRDTLLR 425

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            +  T D L E +AVF PDG ++L N  F   W  E   L        +     +   E 
Sbjct: 426 TRTATFDSLFEALAVFAPDGHLELWNRGFPIAWGLESEVLDGHPQAEQLLEAIGKQLAEP 485

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                    I +   +RK   G ++L     L Y+ +PLP+   +LT ++VT S +AE A
Sbjct: 486 KEISQIGQTIRAATLDRKPRDGRIQLADGRTLTYAGVPLPDGNGLLTVLDVTASQKAEEA 545

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+N AL +AD +   F+ ++SYE R+PLT+I GF +LL     G L  +  +Y++ IS
Sbjct: 546 LRERNRALEEADAVMTRFLANMSYEFRTPLTSIGGFAELLSQGIAGELTPQAREYIQAIS 605

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L   V ++LDL+  +AG+M L  + + L   + ++ +     +    + + +  +
Sbjct: 606 LSVGKLTEQVENVLDLSQSEAGLMPLRKAKVELLPFIEQIVRKREEAILGAGLTLDLKGN 665

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  AD Q+L +   +++ NA+  + +G  +++  A   G    ++ +NG  + +  
Sbjct: 666 AN-KVVEADPQQLQRALGQLIDNAIAHTPRGGRILIDIATRRGLNRIAISDNGEGMSQHE 724

Query: 735 CKSVFN--RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   R   +    +RR  GLG+ +    +  HGG +   +     TT    +P
Sbjct: 725 LARALEGIRMSEDGKGIERR-QGLGIPLARQLVEAHGGTLEFQTRKNAGTTATVTLP 780


>gi|85373836|ref|YP_457898.1| two-component signal transduction histidine kinase [Erythrobacter
           litoralis HTCC2594]
 gi|84786919|gb|ABC63101.1| two-component signal transduction histidine kinase [Erythrobacter
           litoralis HTCC2594]
          Length = 780

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 165/743 (22%), Positives = 321/743 (43%), Gaps = 21/743 (2%)

Query: 66  CDQLSKYHSLLTENNCL--TIVWDGKDETPEIIGQLHQRIDIPQTDTDL-LSFENWLKFH 122
                +   LL E   +   +  DG+ E  + +        +PQ  ++L  + +  L   
Sbjct: 40  RKAARRMARLLDEAPAIPLLVRADGRIEGSDRLAHWLGFDALPQFLSELADADDRGLTKA 99

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQ-NDCAIKIEGRVS------GSCAFLRILSLDGIY 175
              +LS+   + +K    F +      +  ++ + G ++      G  A + +       
Sbjct: 100 QLSELSEKVRRAQKSAAPFRMNITVPGSQRSLALRGTLADPQVSPGGAALVWVFDFSESA 159

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ- 234
           +EL+    +  +     +    L ++    +W R     +   N +Y +    E      
Sbjct: 160 TELSRMREESARAKGDFAALVGLIEAAPMPMWFRGTDTRLRLVNSAYVEAVGAESAEGVV 219

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETV-STLEHGNNKSYKIVRVL-NSFGEAGIA 292
           +   E  +        ++   +   K   E +      G  ++ ++  +     G AG A
Sbjct: 220 EGQVELIESVDGLSAAQVAGQAVQHKQSVERIVQATIGGERRALRVSDLPLGEEGVAGYA 279

Query: 293 IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +D+ +            +    +L  L+V +A FD  R L F N+ F  ++ + L  LA 
Sbjct: 280 VDIQEMEEQARAHRAYAKAQRNMLDRLSVGVAQFDAERKLTFANQPFRRIFNMRLGGLAD 339

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
               + LL   R A + PE  ++  W++     + S ET ++ W L +G  L ++    P
Sbjct: 340 GLPFERLLSEARDAGRTPEVRDFPAWRQEHVEWFASGETQEEAWPLSDGTHLRIVAQPMP 399

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            GG   + E+ T Q+ L    +TL++ +  T+D L E +AVF PDG ++L N +F S W 
Sbjct: 400 DGGLAIIAEDRTEQLALSATRDTLLRTRTATLDSLFEALAVFAPDGHLQLWNRSFASTWG 459

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            E   L     +  +    +    +         +I +   +R      + L     LE+
Sbjct: 460 VEAETLDEHPLVDTMLEEIAGNLAKPKHIKRVGEVIRTATLDRNETGSRVALADGRTLEF 519

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           + +PLP+   +LT ++VT + +AE AL E+N+AL +AD++K  F+ ++SYE R+PLT+I 
Sbjct: 520 AGVPLPDGNGLLTTLDVTANEQAETALRERNQALEQADQVKTRFLANMSYEFRTPLTSIG 579

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF +LL++   G L+ +  +YV+ I  S   L   V ++LDL+  +AG++ L    + L 
Sbjct: 580 GFAELLESGVAGELSPQGREYVQAILDSVGRLTEQVENVLDLSQSEAGLLPLRKEKLELQ 639

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             + +V +    ++    + + +     +    ADR++L +    +L NA+  + +G  +
Sbjct: 640 PFVTQVVREREAEIEAKGLSLDLRGGANI-KVEADRRQLARAVGHLLDNAIVATDRGGKI 698

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN--RFVSNAHRGQRRGVGLGLSIVESFIN 766
           ++  A+        + +NG+ +  +  +      R   +    +RR  GLG+ +    I 
Sbjct: 699 LVDLAKKPEGTRIVLSDNGAGMSSEELRRALEGLRISEDGEGIERR-QGLGIPLARQLIE 757

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG ++I S     T+    +P
Sbjct: 758 AHGGDLTIQSQTGLGTSATILLP 780


>gi|260752459|ref|YP_003225352.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551822|gb|ACV74768.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 795

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 180/723 (24%), Positives = 315/723 (43%), Gaps = 46/723 (6%)

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVA-ETQNDCAIKIEGR 158
               DIP +      F +WL       L+   + L K G++F        +    KI+G+
Sbjct: 80  LGLEDIPSSPDIF--FYSWLDDDSAQILAHHLDILAKTGRAFHCHVYHKMDQRLFKIDGQ 137

Query: 159 VSGSCA---FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +    +    L I  +            + ++    +     LF+ + F +W+R+ A  +
Sbjct: 138 ILQQSSRDIILWIGDITQEADRQKALAFQAQQSGQALQALSSLFEVMPFPIWYRNAALQL 197

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR----MISSSALEKNFCETVSTLEH 271
              N SY    E      ++ I  + +L + +           +   +         +  
Sbjct: 198 QMVNQSYVTAVE--SPSAREVITRNIELTEGKGANNPVSFAEKALETKSMQSRLSPVILS 255

Query: 272 GNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
           G  +  ++  +    G  AG A+DV        ++    +    IL  L+  +A F+  +
Sbjct: 256 GTRRMMRLTDIPLPTGAVAGYALDVEALEEAKAEMGRFLQAQRHILDQLSAGVAQFNAEQ 315

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385
            L F N  F  L+ +   +L  +P  D +LE +R A +LP   ++  WK      + S +
Sbjct: 316 NLVFANEPFRHLFALKAEWLTDHPEFDRVLERMREAGRLPAAHDFPAWKAERRQWFLSHN 375

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              ++ W L +G  L VI    P GG + +FE+ T QV L + ++ +++V+  + D L E
Sbjct: 376 NALEENWLLMDGSHLRVITQPTPDGGLLLIFEDRTEQVRLTSAHDIMLRVRTASFDKLFE 435

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + VF  DGR+ L N  F  +W+ +E  LS    + ++A         ++     +  I 
Sbjct: 436 AIGVFASDGRLNLWNTRFTDIWQIDEKWLSTHPRVDDLAQKTRLRLENTEHSHYISDAIR 495

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
               ER+   G +  +      +S IPLP+   +LT ++VTDS R ERAL ++NEAL  A
Sbjct: 496 MTMIERQPKHGHIAFIDQQHFNFSTIPLPDGNILLTMLDVTDSWRMERALRDRNEALEAA 555

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  FV ++SYELR+PLT+I GF ++L     G L+   + YV  I  +   L  L++
Sbjct: 556 DRLKTDFVANMSYELRTPLTSISGFAEMLAQGYCGDLSQMANDYVAAILDAVARLSTLID 615

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL  +++G ++L+   + +  LL ++  ++  +  E  I  ++  D  LG   +D Q
Sbjct: 616 DILDLTLLESGNLELDRQNVDIKPLLQDMATALTKRAEELGIHFEIKLDNNLGMIESDPQ 675

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS-------- 737
           RL +  + +L  A+  + +G TV L+A+         + +       D+  S        
Sbjct: 676 RLSRAINHMLLIALARNPRGGTVQLQASGAGDHIAIVIVD-----DADILSSSRQGSVES 730

Query: 738 -----VFNRF--VSNAHRGQRRGVGLGLSIV----ESFINLHGGHVSISSSDEGVTTINC 786
                +F+ F     + RG +       SI       FI LHGG + I S+    T    
Sbjct: 731 SLSDPIFDHFSEYGQSVRGGKGSS----SIAIPLIRRFIALHGGSIHIDSNHNQKTHFII 786

Query: 787 RIP 789
            +P
Sbjct: 787 TLP 789


>gi|283856402|ref|YP_162837.2| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775402|gb|AAV89726.2| histidine kinase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 795

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 180/723 (24%), Positives = 315/723 (43%), Gaps = 46/723 (6%)

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE-TQNDCAIKIEGR 158
               DIP +      F +WL       L+   + L K G++F        +    KI+G+
Sbjct: 80  LGLEDIPSSPDIF--FYSWLDDDSAQILAHHLDILAKTGRAFHCHVHHKMDQRLFKIDGQ 137

Query: 159 VSGSCA---FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +    +    L I  +            + ++    +     LF+ + F +W+R+ A  +
Sbjct: 138 ILQQSSRDIILWIGDITQEADRQKALAFQAQQSGQALQALSSLFEVMPFPIWYRNAALQL 197

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR----MISSSALEKNFCETVSTLEH 271
              N SY    E      ++ I  + +L + +           +   +         +  
Sbjct: 198 QMVNQSYVTAVE--SPSAREVITRNIELTEGKGANNPVSFAEKALETKSMQSRLSPVILS 255

Query: 272 GNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
           G  +  ++  +    G  AG A+DV        ++    +    IL  L+  +A F+  +
Sbjct: 256 GTRRMMRLTDIPLPTGAVAGYALDVEALEEAKAEMGRFLQAQRHILDQLSAGVAQFNAEQ 315

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385
            L F N  F  L+ +   +L  +P  D +LE +R A +LP   ++  WK      + S +
Sbjct: 316 NLVFANEPFRHLFALKAEWLTDHPEFDRVLERMREAGRLPAAHDFPAWKAERRQWFLSHN 375

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              ++ W L +G  L VI    P GG + +FE+ T QV L + ++ +++V+  + D L E
Sbjct: 376 NALEENWLLMDGSHLRVITQPTPDGGLLLIFEDRTEQVRLTSAHDIMLRVRTASFDKLFE 435

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + VF  DGR+ L N  F  +W+ +E  LS    + ++A         ++     +  I 
Sbjct: 436 AIGVFASDGRLNLWNTRFTDIWQIDEKWLSTHPRVDDLAEKTRLRLENTEHSHYISDAIR 495

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
               ER+   G +  +      +S IPLP+   +LT ++VTDS R ERAL ++NEAL  A
Sbjct: 496 MTMIERQPKHGHIAFIDQQHFNFSTIPLPDGNILLTMLDVTDSWRMERALRDRNEALEAA 555

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  FV ++SYELR+PLT+I GF ++L     G L+   + YV  I  +   L  L++
Sbjct: 556 DRLKTDFVANMSYELRTPLTSISGFAEMLAQGYCGDLSQMANDYVAAILDAVARLSTLID 615

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL  +++G ++L+   + +  LL ++  ++  +  E  I  ++  D  LG   +D Q
Sbjct: 616 DILDLTLLESGNLELDRQNVDIKPLLQDMATALTKRAEELGIHFEIKLDNNLGMIESDPQ 675

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS-------- 737
           RL +  + +L  A+  + +G TV L+A+         + +       D+  S        
Sbjct: 676 RLSRAINHMLLIALARNPRGGTVQLQASGAGDHIAIVIVD-----DADILSSSRQGSVES 730

Query: 738 -----VFNRF--VSNAHRGQRRGVGLGLSIV----ESFINLHGGHVSISSSDEGVTTINC 786
                +F+ F     + RG +       SI       FI LHGG + I S+    T    
Sbjct: 731 SLSDPIFDHFSEYGQSVRGGKGSS----SIAIPLIRRFIALHGGSIHIDSNHNQKTHFII 786

Query: 787 RIP 789
            +P
Sbjct: 787 TLP 789


>gi|241761919|ref|ZP_04760004.1| histidine kinase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373599|gb|EER63171.1| histidine kinase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 795

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 180/723 (24%), Positives = 315/723 (43%), Gaps = 46/723 (6%)

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE-TQNDCAIKIEGR 158
               DIP +      F +WL       L+   + L K G++F        +    KI+G+
Sbjct: 80  LGLEDIPSSPDIF--FYSWLDDDSAQILAHHLDILAKTGRAFHCHVHHKMDQRLFKIDGQ 137

Query: 159 VSGSCA---FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +    +    L I  +            + ++    +     LF+ + F +W+R+ A  +
Sbjct: 138 ILQQSSRDIILWIGDITQEADRQKALAFQAQQSGQALQALSSLFEVMPFPIWYRNAALQL 197

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR----MISSSALEKNFCETVSTLEH 271
              N SY    E      ++ I  + +L + +           +   +         +  
Sbjct: 198 QMVNQSYVTAVE--SPSAREVITRNIELTEGKGANNPVSFAEKALETKSMQSRLSPVILS 255

Query: 272 GNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
           G  +  ++  +    G  AG A+DV        ++    +    IL  L+  +A F+  +
Sbjct: 256 GTRRMMRLTDIPLPTGAVAGYALDVEALEEAKAEMGRFLQAQRHILDQLSAGVAQFNAEQ 315

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-S 385
            L F N  F  L+ +   +L  +P  D +LE +R A +LP   ++  WK      + S +
Sbjct: 316 NLVFANEPFRHLFALKAEWLTDHPEFDRVLERMREAGRLPAAHDFPAWKAERRQWFLSHN 375

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              ++ W L +G  L VI    P GG + +FE+ T QV L + ++ +++V+  + D L E
Sbjct: 376 NALEENWLLMDGSHLRVITQPTPDGGLLLIFEDRTEQVRLTSAHDIMLRVRTASFDKLFE 435

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + VF  DGR+ L N  F  +W+ +E  LS    + ++A         ++     +  I 
Sbjct: 436 AIGVFASDGRLNLWNTRFTDIWQIDEKWLSTHPRVDDLAQKTRLRLENTEHSHYISDAIR 495

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
               ER+   G +  +      +S IPLP+   +LT ++VTDS R ERAL ++NEAL  A
Sbjct: 496 MTMIERQPKHGHIAFIDQQHFNFSTIPLPDGNILLTMLDVTDSWRMERALRDRNEALEAA 555

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  FV ++SYELR+PLT+I GF ++L     G L+   + YV  I  +   L  L++
Sbjct: 556 DRLKTDFVANMSYELRTPLTSISGFAEMLAQGYCGDLSQMANDYVAAILDAVARLSTLID 615

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL  +++G ++L+   + +  LL ++  ++  +  E  I  ++  D  LG   +D Q
Sbjct: 616 DILDLTLLESGNLELDRQNVDIKPLLQDMATALTKRAEELGIHFEIKLDDNLGMIESDPQ 675

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS-------- 737
           RL +  + +L  A+  + +G TV L+A+         + +       D+  S        
Sbjct: 676 RLSRAINHMLLIALARNPRGGTVQLQASGAGDHIAIVIVD-----DADILSSSRQGSVES 730

Query: 738 -----VFNRF--VSNAHRGQRRGVGLGLSIV----ESFINLHGGHVSISSSDEGVTTINC 786
                +F+ F     + RG +       SI       FI LHGG + I S+    T    
Sbjct: 731 SLSDPIFDHFSEYGQSVRGGKGSS----SIAIPLIRRFIALHGGSIHIDSNHNQKTHFII 786

Query: 787 RIP 789
            +P
Sbjct: 787 TLP 789


>gi|288959556|ref|YP_003449897.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288911864|dbj|BAI73353.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 773

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 200/779 (25%), Positives = 348/779 (44%), Gaps = 78/779 (10%)

Query: 60  SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWL 119
              ++      +  ++L         W G  +   +  +    + I Q ++ + +     
Sbjct: 17  RRQADHGADRDRCRAMLAAAPQPWCAWTGDGDGA-LSDEAATLLGISQAESLVDA----- 70

Query: 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQ------NDCAIKIEGRVSGS----CAFLRIL 169
                  L+ A  +LR++G  F   A T           + + GR   S    C  + I 
Sbjct: 71  --VTAPDLAPALSRLRRDGTPFRCEATTSVTGTAATGRRLVLTGRRGQSGDTRCDVVWIE 128

Query: 170 SLDGIYSELAETTLKCKKL----SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
            +        + +L+ ++      + ++  + + D+L   VW RD++  + W N +Y   
Sbjct: 129 DVTAASDAARDASLRQEQATGAARSRLAELQAMADALPVPVWMRDRSLRLSWCNRAYASA 188

Query: 226 TETEGIVFQKAIGESRKL--FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
            + +       + E R+L      + +R  S    + +       +     +  ++    
Sbjct: 189 VDGDAGT---VVAEGRELTAAGPALAERARSGGFAQSD---RAPVVIGTERRLLEVTEAP 242

Query: 284 NSFGE------AGIAIDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNR 333
               +       G A+D++    +  +L        E+L  L  AIAIF  +  L F N+
Sbjct: 243 LPLTDGGGTLVVGYALDLTPLEELRGELDRHLTAHAEVLERLGTAIAIFGPDTRLTFFNQ 302

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTW 392
           ++  LW++D A+L   P+N ELLE LR+  +LPE  +++T+K    + Y    E  ++  
Sbjct: 303 AYARLWDLDEAWLRGEPTNAELLEELRARRRLPEYADYQTFKRERLTRYTHLVEPVEEMM 362

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           HLP+G TL  +   +P+GG I + E++T  + LE+ YNTL+ VQ ET+D+L+EG+AVFG 
Sbjct: 363 HLPDGTTLRHLAAPHPQGGLITILEDVTNTLALESSYNTLMAVQQETLDNLAEGIAVFGG 422

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----------------ESDG 496
           DGR+KLSNPAF  LW+  +  L    HI ++                         E+  
Sbjct: 423 DGRLKLSNPAFSRLWELADGELHGEPHIADVIERMRPLLEMPPADKSSEKGPDRPGETAT 482

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           W+     +     ER    G +E    SV+E+S +PLP+   + ++++VTD  R E AL 
Sbjct: 483 WEALKEELIGATLERSVRSGRVERSDGSVVEFSTLPLPDGAVLNSYLDVTDGARLETALR 542

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
             N AL  AD++K+ F+ +VS+ LR+PL  IIGF ++L     G +N +Q +YV  I A+
Sbjct: 543 ASNAALEAADQLKSEFIANVSHHLRTPLNGIIGFAEVLANQYFGEMNQRQMEYVRSILAA 602

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL L++D++DL ++ AG+ KL    + L DLL  V            +R++V++   
Sbjct: 603 GERLLELIDDVVDLTSLGAGVTKLERGAVNLPDLLESVAGLTRDWARREGLRLEVVAPEA 662

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           LG    D +RL Q    ++  A+        + L   R NG    SV   G++ P+    
Sbjct: 663 LGQMEGDGKRLKQALFTLVVGAIRNPPPDRRIRLAGERLNGSITLSVS--GAASPDADP- 719

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV----TTINCRIPSK 791
                    A         LG+S+  + + LHGG + +  +          + C +P +
Sbjct: 720 -------QGAAA-------LGVSLARNVVELHGGRLELDETGGTGMYRSAHVRCIMPVR 764



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/395 (14%), Positives = 122/395 (30%), Gaps = 38/395 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFL--VWHRDQAG-------DILWANISYKKNTETEGIV 232
           T +           + +  +       W  D  G        +L  + +           
Sbjct: 16  TRRQADHGADRDRCRAMLAAAPQPWCAWTGDGDGALSDEAATLLGISQAESLVDAVTAPD 75

Query: 233 FQKAIGESRK---LFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--SYKIVRVLNSFG 287
              A+   R+    F+ E    +  ++A  +    T    + G+ +     I  V  +  
Sbjct: 76  LAPALSRLRRDGTPFRCEATTSVTGTAATGRRLVLTGRRGQSGDTRCDVVWIEDVTAASD 135

Query: 288 EAGIAIDVSKEI--TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            A  A    ++       +L     +   L V + + D++  L + NR++    + D   
Sbjct: 136 AARDASLRQEQATGAARSRLAELQAMADALPVPVWMRDRSLRLSWCNRAYASAVDGDA-- 193

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                    ++   R        L  +          ++         L     L V   
Sbjct: 194 -------GTVVAEGRELTAAGPALAERARSGGFAQSDRAPVVIGTERRL-----LEVTEA 241

Query: 406 SNP--RGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             P   GG    +    +LT   +L  + +  +    E ++ L   +A+FGPD R+   N
Sbjct: 242 PLPLTDGGGTLVVGYALDLTPLEELRGELDRHLTAHAEVLERLGTAIAIFGPDTRLTFFN 301

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATC---SRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            A+  LW  +E  L        +        R    +D        +T +    + ++  
Sbjct: 302 QAYARLWDLDEAWLRGEPTNAELLEELRARRRLPEYADYQTFKRERLTRYTHLVEPVEEM 361

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           + L   + L +   P P    +    +VT+++  E
Sbjct: 362 MHLPDGTTLRHLAAPHPQGGLITILEDVTNTLALE 396


>gi|85708406|ref|ZP_01039472.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
 gi|85689940|gb|EAQ29943.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
          Length = 782

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 165/798 (20%), Positives = 332/798 (41%), Gaps = 43/798 (5%)

Query: 19  LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE 78
           +    + + G    +   T+   +L++R   +  ++     + L        +  SLL  
Sbjct: 1   MEFSPLGLVGIALVLAAWTVAAAVLVLRA-GAKTRRTKALQTSL-------KRMQSLLDA 52

Query: 79  NNCL--TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE-NWLKFHHYIKLSKATEKLR 135
              +   +  DG+ E PE + +      +P   ++L       L      +L +     +
Sbjct: 53  APSIPLLVRVDGRIEAPERLARWLGLEAMPNYLSELEGEGDAGLTKAQVDQLWEKVRLTQ 112

Query: 136 KEGQSFDLVAETQNDC-AIKIEGRVS------GSCAFLRILSLDGIYSELAETTLKCKKL 188
           K    F++          + ++G ++      G  A + +       ++LA+        
Sbjct: 113 KSAAPFEMALAPPGSRKTLALQGTLADPQVSPGGAAIVWVFDFTNSETQLAQFRESASAA 172

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK--- 245
               +    L ++    +W RD    ++  N +Y +      +  +  + +  +L +   
Sbjct: 173 QADFAALIGLIEAAPMPMWFRDPEMRLMLVNHAYVEAVGAGSL--EAVVEDQIELLEASG 230

Query: 246 -EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS-FGEAGIAIDVSKEITVND 303
            E   +    +   +K      +    G+ +S ++  +     G AG A+D+ ++  V  
Sbjct: 231 GESPAQIARKAFEAQKETQRDAAVTIDGSRRSVRVTDLPLGRDGVAGYAMDIEEQQQVTR 290

Query: 304 QLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           +     +    +L  L+V +A F     L F NR F  L+ I         S ++ L   
Sbjct: 291 EFRAFRDAQRAMLDQLSVGVAQFTSEEKLAFANRPFRRLFGITAEVAEGRVSFEQFLSDA 350

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R     PE  ++  W+    + + +SE  ++ W L  G  L ++    P GG + + E+ 
Sbjct: 351 REHGSTPEVRDFPEWRREHRAWFDASEAVEENWPLTGGVHLRIVAQPMPDGGLVMIAEDR 410

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T  + L    +TL++ +  T+D L E +A+F PDG ++L N +F  +W  E   L     
Sbjct: 411 TESLALSATRDTLLRTRTATLDSLFEALAIFAPDGSVQLWNRSFGGMWGLESEFLDTHPS 470

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +              +   AI+ +   +R+  +G + L     L ++ +PLP+   +
Sbjct: 471 AEVLLEAIGENLRRPGEAEKIGAIVRAATLDRREKEGQVVLADGRTLRFAGVPLPDGNGL 530

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           LT +++TDS +AE+AL E+  AL +AD +K  F+ ++SYE R+PLT+I GF +LLK+   
Sbjct: 531 LTVLDITDSQKAEQALRERAVALEEADAVKARFLANMSYEFRTPLTSIGGFAELLKSGAA 590

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L    S+YV+ I +S   L   V ++LDL+  +AG++ +    I L   L ++ +   
Sbjct: 591 GELGEGASEYVDAILSSVERLTEQVENVLDLSQSEAGLLPIEKEEIDLLAFLTKLVRERE 650

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNG 717
             +    + + +    +     AD ++L +    +L NA++ + +G  + ++  +  D+ 
Sbjct: 651 QAIIGAGLGLDLKG-RRGRVVEADPRQLGRALGHLLDNAIEATPEGGKITIELPKPTDDD 709

Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRFVSN----AHRGQRRGVGLGLSIVESFINLHGGH 771
            +    S+ + G  +  D                       G GLG+ +    I  HGG 
Sbjct: 710 AWRGKVSISDTGKGMTPDELAR-----AEGTLNSDDSEMSEGSGLGIRLARQLIEAHGGT 764

Query: 772 VSISSSDEGVTTINCRIP 789
           + ++S  +  T+    +P
Sbjct: 765 LDLTSRKDVGTSAVIVLP 782


>gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea
           phototrophica DFL-43]
 gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea
           phototrophica DFL-43]
          Length = 1337

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/657 (20%), Positives = 273/657 (41%), Gaps = 48/657 (7%)

Query: 173 GIYSELAETTLKCKKLSNHI---SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           G+  ++ E   +   L  H     +F+ + D +    + +D+    ++ N +++K T   
Sbjct: 343 GLRIDVTELKQREALLETHAAQNELFRAILDEMPVSSFVKDEDLRYVYVNRAHRKLT--- 399

Query: 230 GIVFQKAIGESR-KLFKEEIK--KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
           G+  +  +G+   ++F ++ +  + + +S        E    L   + +  +++     F
Sbjct: 400 GLTPEDMLGKDDFRIFGDQGQALRDVDTSVMSGNGLVECEIELNATDGRPLQLIDRKVPF 459

Query: 287 GE-------AGIAIDVSKEITVNDQL-----------THTYEILHNLTVAIAIFDQNRYL 328
            +        G  IDVS+     +++                IL  + + + + D+N  +
Sbjct: 460 TDPSGQRFLLGTTIDVSERKRREEEVFEARRLAEIHRDDLESILETMHMGVIVLDKNLDV 519

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL-NWKTWKENIFSVYKSSET 387
           +  N +F  +W +D     TN S  E++E  R  N       ++  + E   S       
Sbjct: 520 KLINSAFYRIWNVDQDRDLTNASFKEVIELNRYNNIYDVPDNDFDKYIETRLSEISGGFA 579

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN-------TLVKVQGETI 440
               +   +G+TL   V S   G  +  + ++T     E + +          ++  +  
Sbjct: 580 APREFSRADGKTLIYSVRSLSEGKRMVTYFDVTELKQREHERDLARAEGERANEILRDAA 639

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
             +++G+ V   + RI+ SN AF  +    +  + PG         C    +  +G    
Sbjct: 640 SAMAQGLLVV-ENNRIQFSNKAFCEILDLPQELVKPGELADRYLDYCEARGDFGEGEKAS 698

Query: 501 AAI--ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
            +   I    +  K      +   +  L+       +   + TF ++T + + E  L + 
Sbjct: 699 ESREKIRRTIENGKPYAVERKSAKNRWLKVDAKVGSSNAIIATFSDITATKQREAELHDL 758

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                 AD  K+ F+ ++S+E+R+P+  ++G  +LL  ++   L+++Q  + + I  S T
Sbjct: 759 LGKAETADRAKSEFLANMSHEIRTPMNGVLGMAELLSRTE---LDTRQRTFADIIVKSGT 815

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++NDILD + +DAG + L      L + + +V   I+++  E +I + V  D  L 
Sbjct: 816 ALLTIINDILDFSKIDAGQLTLESQPFDLREAIEDVATLISSRAAEKDIELIVRIDPALP 875

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARDNGDFIFSVKNNGSSIPED 733
              V D  R+ Q+ + ++ NA+ F+  G   + +    A+  + D    V + G  IP +
Sbjct: 876 DCLVGDVGRIRQVMTNLVGNAIKFTETGHVLIEVTGSPASEGSVDLTLRVHDTGIGIPPE 935

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +VF++F        RR  G GLGL+I    + L  G +S  S+    +    +I
Sbjct: 936 KLDAVFDKFSQVDTSSTRRHEGTGLGLAITSRLVALMDGTISAESTPGEGSVFCVKI 992



 Score = 91.9 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 118/366 (32%), Gaps = 16/366 (4%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET-VSTLEHGNNKSYKIVR 281
                   ++       +  +   +   ++I++S   K      + TL  G  K   + +
Sbjct: 145 LAQRGHHDLLLAAIEAAAVPMLVVDADDQVIAASKHSKTATGPWLETLLPGGGKMRHVAQ 204

Query: 282 VLNSFGEAG--------IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
                  A           + V +    +D L    +I   + V I I+D N  L + N 
Sbjct: 205 EPAHVTAAAEPLQARPQPPVGVEQSNNESDLLAPVRDIFDAMDVGIVIYDANDVLIYVNP 264

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +   L       L    +  +LL+      +  + +    W EN  SV++   +      
Sbjct: 265 AMDALTA-PDYRLEVGTALPDLLQKTCHIKESEDPVARAAWIENRLSVHRQFGS-ATVER 322

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT---LVKVQGETIDHLSEGVAVF 450
           L NG+ L +       G T+ +  ++T     E    T     ++    +D +     V 
Sbjct: 323 LTNGRWLRLTNRQLDNGCTLGLRIDVTELKQREALLETHAAQNELFRAILDEMPVSSFVK 382

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             D R    N A R L       +      R I     +   + D   +    +   + E
Sbjct: 383 DEDLRYVYVNRAHRKLTGLTPEDMLGKDDFR-IFGDQGQALRDVDTSVMSGNGLVECEIE 441

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
             +  G    L D  + ++  P      + T ++V++  R E  + E         +   
Sbjct: 442 LNATDGRPLQLIDRKVPFT-DPSGQRFLLGTTIDVSERKRREEEVFEARRLAEIHRDDLE 500

Query: 571 SFVQHV 576
           S ++ +
Sbjct: 501 SILETM 506


>gi|298291978|ref|YP_003693917.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296928489|gb|ADH89298.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 786

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 121/504 (24%), Positives = 225/504 (44%), Gaps = 23/504 (4%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +++  + +       L N+   +A++D    L   N+ F E  ++   FL +  + ++ +
Sbjct: 7   EDVDGSREARLLRATLENMAQGVAMYDAEHRLVTWNQLFREYLDMPEEFLGSEHTFEDYI 66

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
            +L    +  E    +T    I  +     +H+     P+G  L V     P GG I ++
Sbjct: 67  RYLALRGEFGEVDIEQTLARRIAQL---KTSHRFERIRPDGTVLEVRRDPVPGGGFIAIY 123

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLS 475
            ++T +   E K     +           G+ +   D   +   NP+F  L   + + + 
Sbjct: 124 TDITERKQAEMKLREDEERFRAIDAAAPVGLVIVDADDHTVLHLNPSFCELVGKQADEV- 182

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                  +        ++    D   AI+ +   ERK  Q      +      S +PL  
Sbjct: 183 -------LGQPLDDVLHDPANGDALVAIVDARSSERKEFQFIRPDGTTRWTMVSQVPLDF 235

Query: 536 AQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 + +FV+++D VRAE+ L E  EA   A  +K++F+ ++S+ELR+PL  IIG+++
Sbjct: 236 RGEKAVICSFVDISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTPLNAIIGYSE 295

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L        N+     ++ I ++   LL L+NDILDL+ ++AG M +    + L  +++
Sbjct: 296 ILSEDAADDGNTAMVADLDKIQSAGKHLLGLINDILDLSKIEAGRMDVYLEQVFLTRMVD 355

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EVK  +   M +N  ++ V     +G+   D  +L Q    +LSNA  F+ +G TV L+ 
Sbjct: 356 EVKTIVGPMMQKNANQLVVECPVDIGTLRTDLTKLKQSLINLLSNAAKFTKEG-TVTLRI 414

Query: 713 ARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           +RD     +    F V ++G  + E+    +F  F        R   G GLGL+I + F+
Sbjct: 415 SRDAMPDGSSAIRFDVSDSGIGMTEEQMGRLFQAFTQADSSTTRNFGGTGLGLTITKHFV 474

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            + GG ++++S     +T    +P
Sbjct: 475 AMLGGTIAVASEAGRGSTFTIELP 498



 Score = 45.7 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 85/277 (30%), Gaps = 31/277 (11%)

Query: 52  AKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGK-----DETPEIIGQLHQRIDIP 106
           +++     + L  +   ++ Y +         + W+       D   E +G  H   D  
Sbjct: 12  SREARLLRATLENMAQGVAMYDA-----EHRLVTWNQLFREYLDMPEEFLGSEHTFEDYI 66

Query: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL 166
           +       F    +      L++   +L+    S        +   +++         F+
Sbjct: 67  RYLALRGEFG---EVDIEQTLARRIAQLK---TSHRFERIRPDGTVLEVRRDPVPGGGFI 120

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ-AGDILWANISYKKN 225
                  IY+++ E      KL      F+ +  +    +   D     +L  N S+ + 
Sbjct: 121 ------AIYTDITERKQAEMKLREDEERFRAIDAAAPVGLVIVDADDHTVLHLNPSFCEL 174

Query: 226 T--ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
              + + ++ Q            +    ++ + + E+   + +     G  +   + +V 
Sbjct: 175 VGKQADEVLGQPLDDVLHDPANGDALVAIVDARSSERKEFQFIRP--DGTTRWTMVSQVP 232

Query: 284 NSF----GEAGIAIDVSKEITVNDQLTHTYEILHNLT 316
             F          +D+S  +    QL    E   + +
Sbjct: 233 LDFRGEKAVICSFVDISDRVRAEQQLREAKEAAESAS 269


>gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 1126

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/715 (19%), Positives = 279/715 (39%), Gaps = 75/715 (10%)

Query: 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
                  L++  E L K  Q   + A       +    R     A               
Sbjct: 132 DPGSAADLAQVREALEKLDQPIGIFAADGRPLVVNAAHRKGAGPA--------------P 177

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQ 234
                     + +   + + + L   V+ RD    +++AN  Y     +  +E  G+   
Sbjct: 178 AGDSAWGDSVSELDALRTVLEDLPVAVFVRDDQHRLIYANKYYETFSGRARSEYLGMTEH 237

Query: 235 KAIGES-------------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-- 279
           +  G               R     E++  M S           V+ +   + ++Y +  
Sbjct: 238 EMFGPEGAEPIYQENLLALRDGISVELESEMPSKGGHVYPVISRVNRVITADGRTYVVGS 297

Query: 280 ---VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
              +  L    +A IA    +E+   D       IL +L + + I D +  + + N  F 
Sbjct: 298 FSDISPLKEREKALIASRKQEEVLHRD----IESILRSLPIGVLILDNDHRILYVNDEFY 353

Query: 337 ELWEIDLA-------FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            +WE+          F+     N EL  +     + PE+L    +++++F   +  E  +
Sbjct: 354 SIWELPREDGFDGRPFIDVIRRNHELGRY--DGTRTPEEL--YAFRKHLFEAAE-PEPIE 408

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-------YNTLVKVQGETIDH 442
             W    G+++            +  + +++   + E +          + ++  +    
Sbjct: 409 VGW--AGGKSVIFDSRRISNDRILLTYADISAVREREKEIHETRAALERVGEMMRDATHA 466

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +S+G+A+   DG IK+SN A   + +   + +  G     +   C+   +  D       
Sbjct: 467 MSQGLAIV-QDGIIKMSNEAMADILQIPPHYIEAGQGWLGMFEFCAARGDFHDAAADILE 525

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
              +    R+ +     +  +  +            +  F +VT+    E  L E     
Sbjct: 526 GWRANIAARQPISTVFHVGGERWVNMDATVSTGQHWVALFTDVTELKSREEELRELLSRA 585

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             AD  K+ F+ ++S+E+R+P+  ++G  +LL  +   +L+++Q  +++ I  S   LL 
Sbjct: 586 EAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFIDIIVKSGNALLT 642

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           ++NDILD + +DAG MKL  +   + + + +V   +++   E NI + V +   L  + +
Sbjct: 643 IINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVI 702

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFI--FSVKNNGSSIPEDMCK 736
            D  R  QI + ++ NA+ F+ +G  V +    +    G+ +    +++ G  IPE+  +
Sbjct: 703 GDAGRFRQIVTNLVGNAVKFTERGH-VFVDVGFETVAGGEIMANIRIEDTGIGIPEEKLE 761

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SVF++F        RR  G GLGL+I    ++L GG++ + S     +     +P
Sbjct: 762 SVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGEGSVFTVNLP 816


>gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 1133

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/670 (19%), Positives = 271/670 (40%), Gaps = 61/670 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKL----SNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
           R L ++  Y + A              N +   + + + L   V+ RD    +++AN  Y
Sbjct: 164 RPLVVNAAYRKGARPAPAHGSAWGKSVNELDALRTVLEDLPVAVFVRDDKHRLIYANKYY 223

Query: 223 -----KKNTETEGIVFQKAIGES-------------RKLFKEEIKKRMISSSALEKNFCE 264
                +  +E  G+   +  G               R     E++  M S+S        
Sbjct: 224 ETFSGRARSEYLGMTEHEMFGPEGAEPIYQENLLALRDGISVELESEMPSTSGHVYPVIS 283

Query: 265 TVSTLEHGNNKSYKI-----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
            V+ +   + ++Y +     +  L    +A IA    +E+   D       IL +L + +
Sbjct: 284 RVNRVITADGRTYVVGSFSDISPLKEREKALIASRKQEEVLHRD----IESILRSLPIGV 339

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-----PEQLNWKTW 374
            I D +  + + N  F  +WE+            +++       +      PE+L    +
Sbjct: 340 LILDNDHRILYVNDEFYSIWELPREDRFDGRPFIDVIRRNHELGRYDGTRTPEEL--YAF 397

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK------ 428
           ++++F   +  E  +  W    G+++            +  + +++   + E +      
Sbjct: 398 RKHLFEA-EEPEPIEVGW--AGGKSVIFDSRRISNDRILLTYADISAVREREKEIHETRA 454

Query: 429 -YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
               + ++  +    +S+G+A+   DG IK+SN A   + +   + +  G     +   C
Sbjct: 455 ALERVGEMMRDATHAMSQGLAIV-QDGIIKMSNDAMADILQIPPHYIEAGQGWLGMFEFC 513

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +   +  D  D       +    R+ +     +  +  +            +  F +VT+
Sbjct: 514 AARGDFHDAADEILQGWRANIAARQPISTVFHVGGERWVNMEATVSSGQHWVALFTDVTE 573

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E  L +       AD  K+ F+ ++S+E+R+P+  ++G  +LL  +   +L+++Q 
Sbjct: 574 LKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQK 630

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +++ I  S   LL ++NDILD + +DAG MKL  +   L + + +V   +++   E NI
Sbjct: 631 TFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDLVEAVEDVATLLSSHAAEKNI 690

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFI--F 721
            + V +   L  + + D  R  QI + ++ NA+ F+ +G  V +     A   G+ I   
Sbjct: 691 ELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGH-VFVDVGFQAAAGGEIIASI 749

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            +++ G  IP +   SVF +F        RR  G GLGL+I    ++L GG+++  S   
Sbjct: 750 RIEDTGIGIPREKLDSVFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYINAESEWG 809

Query: 780 GVTTINCRIP 789
             +     +P
Sbjct: 810 RGSVFTVNLP 819



 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 64/468 (13%), Positives = 137/468 (29%), Gaps = 91/468 (19%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM- 252
             + + D L+   + ++     +  N +Y      E   F      SR+LF    ++   
Sbjct: 11  ACRRIAD-LNTPAYVKNSELRYVAVNEAYAAFLGREISDF--IGRRSRELFDRPEEEDRE 67

Query: 253 -------------------ISSSALEKNFCETVSTLEHGNNKSY-------KIVRVLNSF 286
                               ++ A E+   E+ S       + Y       +  R   + 
Sbjct: 68  DKERRALVFGTEENAICFDAANLAHERIQIESFSPSPD---RIYVLGMFEPRERRAAGNE 124

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV---------- 336
              G +  V+    V        E L  L   I IF  +      N ++           
Sbjct: 125 ANGGSSRTVNDS-GVAADFARVREALEKLDHPIGIFAADGRPLVVNAAYRKGARPAPAHG 183

Query: 337 ELWEIDLAFLATNPSNDE---LLEFLRSA--NKLPEQLNWKTWKENIFSVYKSSETH--- 388
             W   +  L    +  E   +  F+R      +     ++T+     S Y     H   
Sbjct: 184 SAWGKSVNELDALRTVLEDLPVAVFVRDDKHRLIYANKYYETFSGRARSEYLGMTEHEMF 243

Query: 389 ----------KDTWHLPNGQTLHV--------------------IVTSNPRGGTIWMFEN 418
                     ++   L +G ++ +                    ++T++ R   +  F +
Sbjct: 244 GPEGAEPIYQENLLALRDGISVELESEMPSTSGHVYPVISRVNRVITADGRTYVVGSFSD 303

Query: 419 LTVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           ++   + E            L +     +  L  GV +   D RI   N  F S+W+   
Sbjct: 304 ISPLKEREKALIASRKQEEVLHRDIESILRSLPIGVLILDNDHRILYVNDEFYSIWELPR 363

Query: 472 NRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                G    ++         Y+ +   +   A      +  +     +       + + 
Sbjct: 364 EDRFDGRPFIDVIRRNHELGRYDGTRTPEELYAFRKHLFEAEEPEPIEVGWAGGKSVIFD 423

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              + N + +LT+ +++     E+ + E   AL +  E+       +S
Sbjct: 424 SRRISNDRILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMS 471


>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1625

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/805 (20%), Positives = 308/805 (38%), Gaps = 98/805 (12%)

Query: 38   IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE----TP 93
            +  II  I  R    K++ E+            ++   +         WD        +P
Sbjct: 385  LYSIIQDITDRKKAEKELLESR----------ERFSLAMEATKDGLWDWDVSTGEVYFSP 434

Query: 94   EIIGQLH-QRIDIPQTDTDLLSFENWLKFHHYIKLSKA----TEKLRKEGQSFDLVAE-- 146
              +  L     ++P           WL   H  +  KA     + +     SF +     
Sbjct: 435  GYVSMLGYDSAEVPGHVQ------TWLDLIHPEEKEKAYQANLDCINNLVDSFAVEYRMQ 488

Query: 147  TQNDCAIKIEGRVSGSCAFLR-----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
             +N   + I GR     A  R      L + G ++++    L  + L      ++ + +S
Sbjct: 489  ARNGNWVWILGR---GSAVKRDETGKALRMIGTHTDITRRKLAEESLREQEFFYRSILES 545

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE--IKKRMISSSALE 259
            ++  V+  D  GD+ +             ++F ++  E  ++   E  +  R+I S  L 
Sbjct: 546  INDAVFLTDAQGDLTFV-------CPNAHVIFGRSRQELLEMANIEHVLGSRLIKSGELV 598

Query: 260  KNFCETVST-------LEHGNNKSYKIVRVLNSFGEAGI----AIDVSKEITVNDQLTHT 308
            ++  E  +          H       I R+     E G+      DV+++    D    T
Sbjct: 599  EDEQEISNRECAIKDSRGHWRYLLVNIKRLPEQLHEKGLYLYCCRDVTEKKKTEDTFRQT 658

Query: 309  YE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
             E    I+ N    I I D+   L F NRS   +            ++  + +F+   ++
Sbjct: 659  LERYRLIVENANEGIRILDRQARLSFANRSMALMLGYSPE----KVTDHSIWDFIHPEDQ 714

Query: 365  LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMFEN 418
                  W+  K      Y+    H+      NG T+  +V+S P        G+  +  +
Sbjct: 715  DKFNRIWENRKSGKAEKYELRLIHR------NGSTVWTLVSSTPLFKDKEFNGSFALVAD 768

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            +T +  LE +     ++     +    G   +  D R          L    E   +P  
Sbjct: 769  ITEKKHLEEELRKQQEILTSMEEMARVGGWEWDIDARTMTWTRGAY-LIHDFEVNHNPTL 827

Query: 479  HIRNIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                I+ +   YY E     S+ +   A    ++D E   +      L    +  +  P+
Sbjct: 828  SSELISKSLECYYKEDRSRVSNAFQACAEKGVAYDQEFPFVSARGRRL---WVRTAAWPV 884

Query: 534  PNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             ++  ++      +++T+  +++  L E  +  ++A   K+ F+ ++S+E+R+P+  +IG
Sbjct: 885  YDSGRIVRVAGHIMDITELKQSQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVIG 944

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             TDLL  ++   L  +Q    E I +S   LL L+NDILD + ++AG ++L      L  
Sbjct: 945  MTDLLMDTE---LRPEQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRY 1001

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            LL ++   +A +  E  + +  + D  + +    D  RL QI + ++ NA+ F+ +G  V
Sbjct: 1002 LLEDLASLMAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQGEVV 1061

Query: 709  IL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
            +     + + D+   +F+V++ G  IPED    +FN+F        R   G GLGL+I  
Sbjct: 1062 VRVQRSEVSADDVLLLFTVQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISR 1121

Query: 763  SFINLHGGHVSISSSDEGVTTINCR 787
                + GG V + S           
Sbjct: 1122 QLAEMMGGEVGVQSEYGRGCKFWFT 1146



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/394 (11%), Positives = 123/394 (31%), Gaps = 39/394 (9%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI--VFQKAIGESRKLFKEEIKKRMI 253
           + L ++    ++     G +++ N +  +    +    + +     + +L+     +   
Sbjct: 24  RDLLENAPTGIFTSTPEGKLIYVNSALARMFGYDSPQDMVESVTDIASQLYANPADRAAF 83

Query: 254 -SSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSFGE----AGIAIDVSKEITVNDQ 304
                 +K        +   +   + + R    VL+  G      G   D+++   V + 
Sbjct: 84  LRHLEDKKELVNHEYRMRRRDGTEFWVSRNARAVLDEDGRLVACQGFTTDITERKQVQEA 143

Query: 305 LTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L  + E    +   +   +   D    +   N +   +  +    +    S D   + ++
Sbjct: 144 LGASEEKHRLLFETMAQGVVYQDAEGVIISVNPAAERILGLTSEQIVRRSSMDPQWKMIQ 203

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG--------T 412
                    +       + S   +    +  +H  +   + + +T+ P            
Sbjct: 204 EDGS-EVPGSQHPAMTALKSGKTTGPVTRGVYHPVSNDHIWLSITAVPMFHPGDSKPCQV 262

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEE 471
              FE++T   +   +     ++     +  +    +  PD G I  +N A    +    
Sbjct: 263 YTTFEDITRLKEQHDELRKREQMFTNLFEKHAAVKLMVDPDTGAIIDANHAAAEFYGWSR 322

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI- 530
             L    +I+ I        N     +L   +  +   ++   +    L   S+ +  + 
Sbjct: 323 EELKK-KYIQEI--------NTLSPDELHKELERARSRDKFWFEFQHRLADGSIRDVEVF 373

Query: 531 ---IPLPNAQTML-TFVNVTDSVRAERALTEKNE 560
              I     Q +     ++TD  +AE+ L E  E
Sbjct: 374 SSKIESHGRQVLYSIIQDITDRKKAEKELLESRE 407



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/469 (12%), Positives = 142/469 (30%), Gaps = 60/469 (12%)

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDI-PQTDTDLLSFENWLKFHHYIKLSKATEKL 134
           +         +D   +  E +  +  ++   P      L            +L     ++
Sbjct: 46  VNSALARMFGYDSPQDMVESVTDIASQLYANPADRAAFLR-----HLEDKKELVNHEYRM 100

Query: 135 RKE-GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
           R+  G  F +    +    +  +G         R+++  G  +++ E     + L     
Sbjct: 101 RRRDGTEFWVSRNARA--VLDEDG---------RLVACQGFTTDITERKQVQEALGASEE 149

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG---------IVFQKAIGESRKLF 244
             ++LF+++   V ++D  G I+  N + ++                   K I E     
Sbjct: 150 KHRLLFETMAQGVVYQDAEGVIISVNPAAERILGLTSEQIVRRSSMDPQWKMIQEDGSEV 209

Query: 245 KEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKIVRVL-------NSFGEAGIAIDV 295
                  M +  S          V      ++    I  V                  D+
Sbjct: 210 PGSQHPAMTALKSGKTTGPVTRGVYHPVSNDHIWLSITAVPMFHPGDSKPCQVYTTFEDI 269

Query: 296 SKEITVNDQLTHTYEILHNL---TVAI-AIFDQN-RYLQFHNRSFVELWEIDLAFLATNP 350
           ++    +D+L    ++  NL     A+  + D +   +   N +  E +      L    
Sbjct: 270 TRLKEQHDELRKREQMFTNLFEKHAAVKLMVDPDTGAIIDANHAAAEFYGWSREELKKK- 328

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI-----V 404
                  +++  N L P++L+    KE   +  +     +    L +G    V      +
Sbjct: 329 -------YIQEINTLSPDELH----KELERARSRDKFWFEFQHRLADGSIRDVEVFSSKI 377

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            S+ R     + +++T +   E +     +     ++   +G+  +         +P + 
Sbjct: 378 ESHGRQVLYSIIQDITDRKKAEKELLESRERFSLAMEATKDGLWDWDVSTGEVYFSPGYV 437

Query: 465 SLWKTEENRL-SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           S+   +   +        ++     +        D    ++ SF  E +
Sbjct: 438 SMLGYDSAEVPGHVQTWLDLIHPEEKEKAYQANLDCINNLVDSFAVEYR 486



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 24/273 (8%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            ++L N    I        L + N +   ++  D    +     + + +   ++      
Sbjct: 24  RDLLENAPTGIFTSTPEGKLIYVNSALARMFGYD----SPQDMVESVTDI--ASQLYANP 77

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---PRGGTIWMFE----NLTV 421
            +   +  ++    K    H+      +G    V   +       G +   +    ++T 
Sbjct: 78  ADRAAFLRHLEDK-KELVNHEYRMRRRDGTEFWVSRNARAVLDEDGRLVACQGFTTDITE 136

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +  ++       +      + +++GV     +G I   NPA   +      ++   + + 
Sbjct: 137 RKQVQEALGASEEKHRLLFETMAQGVVYQDAEGVIISVNPAAERILGLTSEQIVRRSSMD 196

Query: 482 NIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-----N 535
                     +E  G    A   + S        +G    +S+  +  SI  +P     +
Sbjct: 197 PQWKMIQEDGSEVPGSQHPAMTALKSGKTTGPVTRGVYHPVSNDHIWLSITAVPMFHPGD 256

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           ++    +    D  R    L E+++ LRK +++
Sbjct: 257 SKPCQVYTTFEDITR----LKEQHDELRKREQM 285


>gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 1126

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/648 (18%), Positives = 256/648 (39%), Gaps = 45/648 (6%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----KNTETEGIVF 233
           A +  +  +  N   + + + + L   V+ RD    +++AN  Y+       ++  G+  
Sbjct: 175 ARSDTRWHESVNEGDLLRTIMEDLPVAVFVRDDKHRLVYANRYYETFGGYDRSQVLGMTE 234

Query: 234 QKAIGESR-------------KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
            +  G                    +EI+ +M             V+ +   + ++Y   
Sbjct: 235 HEMFGPEEGEAIYQENRLALEDGLSKEIESQMPGRDGRIHPLISRVNRVVTADGRTY--- 291

Query: 281 RVLNSFGEAGIAID-----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            V+ SF +     +     +  +            IL +L + + I D +  +   N  F
Sbjct: 292 -VVGSFSDIAPLKEREKALIEAKKQEEALHRDIESILRSLPIGVLILDNDHRILSANDEF 350

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             +WE+ L          +++       +       +        ++++ E         
Sbjct: 351 YSIWELPLDDPFDGRHFVDVIRRNNELGRYDGTQTAEEIYAFRKHLFETDEPEPIELGWA 410

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-------YNTLVKVQGETIDHLSEGVA 448
            G+++            +  + +++   + E +          + ++  +    +S+G+A
Sbjct: 411 GGKSVIFDSRRISNDRILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLA 470

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           +   DG IK+SN A  ++ +     +  G     +   C+   +  D  D       +  
Sbjct: 471 IV-QDGIIKMSNEAMAAILQIPPAYIEAGQGWLGMFEFCAARGDFHDAADEILQGWRANI 529

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             R+ +     +  +  +    +       +  F +VT+    E  L         AD  
Sbjct: 530 AARQPISTVFHVGGERWVNMDAMVSEGQHWVALFTDVTELKSREEELRHLLSRAEAADRA 589

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  ++G  +LL  +   +L+++Q  +V+ I  S   LL ++NDIL
Sbjct: 590 KSEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFVDIIVKSGNALLTIINDIL 646

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + +DAG MKL  +   + + + +V   +++   E NI + V +   L  + + D  R 
Sbjct: 647 DFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRF 706

Query: 688 LQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI + ++ NA+ F+ +G     V  +AA          +++ G  IP +  +SVF++F 
Sbjct: 707 RQIVTNLVGNAVKFTERGHVFVDVGFEAAAGGEIMASIRIEDTGIGIPAEKLESVFDKFS 766

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  RR  G GLGL+I    ++L GG++++ S     +     +P
Sbjct: 767 QVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTVNLP 814



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 62/462 (13%), Positives = 140/462 (30%), Gaps = 84/462 (18%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM- 252
             + + D LD   + ++     +  N +Y      E   F      SR+LF    ++   
Sbjct: 11  ACRRIAD-LDTPAYVKNSELRYVAVNEAYADFLGREISDF--IGRRSRELFDRPEEEERE 67

Query: 253 -------------------ISSSALEKNFCETVSTLEHGNNK--SYKIVR---VLNSFGE 288
                               +    E+   E+ S           +++     V    G 
Sbjct: 68  DRERRALVFGTEENAICFDAAGLGHERIQIESFSPSPDRAYVLGVFEVRDRRAVGRETGG 127

Query: 289 AGIAIDVSKEITVNDQLTHTYE-------------------------------------- 310
           +   ++ S    V + L    +                                      
Sbjct: 128 SPRTVNDSDLAQVREALERLEQPIGIFAEDGRPLVVNAAYRTGAKPAARSDTRWHESVNE 187

Query: 311 ------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 I+ +L VA+ + D    L + NR +      D + +     ++          +
Sbjct: 188 GDLLRTIMEDLPVAVFVRDDKHRLVYANRYYETFGGYDRSQVLGMTEHEMFGP---EEGE 244

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT---- 420
              Q N    ++ +    +S    +D    P    ++ +VT++ R   +  F ++     
Sbjct: 245 AIYQENRLALEDGLSKEIESQMPGRDGRIHPLISRVNRVVTADGRTYVVGSFSDIAPLKE 304

Query: 421 ---VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
                ++ + +   L +     +  L  GV +   D RI  +N  F S+W+   +    G
Sbjct: 305 REKALIEAKKQEEALHRDIESILRSLPIGVLILDNDHRILSANDEFYSIWELPLDDPFDG 364

Query: 478 THIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            H  ++    +    Y+ +   +   A      +  +     L       + +    + N
Sbjct: 365 RHFVDVIRRNNELGRYDGTQTAEEIYAFRKHLFETDEPEPIELGWAGGKSVIFDSRRISN 424

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            + +LT+ +++     E+ + E   AL +  E+       +S
Sbjct: 425 DRILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMS 466


>gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1637

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/789 (20%), Positives = 313/789 (39%), Gaps = 71/789 (8%)

Query: 44   LIRQRNSLAKKVNETYSFLSEICDQLSK-YHS------LLTENNCLTIVWDGKDETPEII 96
            L      L     E YS  +E+  ++++   +      LL       +  D       + 
Sbjct: 720  LQSTNEELQSVNEELYSVNAELQVRVNEVNEANADMVNLLATTRVGVVFLDDDLRVRRVT 779

Query: 97   GQLHQRIDI-PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
             ++ + + I P       SFE+++     I+  +  E++R   Q+ D   E + + + + 
Sbjct: 780  PEISRLLSIEPNDLGR--SFESFIHP---IQDDQFLERVR---QARDERVELEWEVSCRD 831

Query: 156  EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
               +  +  +LR   ++G+     +  +  ++    +  FK + D     +   DQ G I
Sbjct: 832  SSYLVRALPYLRNSEINGVVIAFVDVDI-LRRAERDVLKFKFMADQNIDALVLLDQKGKI 890

Query: 216  LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK-----RMISSSALEKNFCETVSTLE 270
             +AN   +K  +  G   ++ +G+    FK E        R+  + A   N  E  S L+
Sbjct: 891  SYAN---RKMCDQLGYSNEEILGQLLSRFKSETDPKSFDDRLEKAHAKGGNLFE--SWLQ 945

Query: 271  HGNNKSYKIVRVLNSFGEAG----IA--IDVSKEITVNDQLTHTYEILHNLTVAIAIFD- 323
              +   + +   L      G     A   D+S   T   Q+    E + +    I I D 
Sbjct: 946  QRDGTEFPVEVALTPVFLQGKQLLFASIRDISLRKTHESQMRLLSEAVQSAANGIVITDC 1005

Query: 324  --QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              ++  + F N+ F ++       +          E   +   L            I   
Sbjct: 1006 SSEDHPITFVNKGFTDMTGFSEQEIIGRNCRFLQGEHTDNETVL-----------RIRRA 1054

Query: 382  YKSSETHKDTW--HLPNGQTLH--VIVTS-NPRGGTIWMF----ENLTVQVDLETKYNTL 432
                E+ ++    +  NG+     + +T  +   G +  F     ++T +++   +  T 
Sbjct: 1055 LGRGESVRELIKNYRKNGEPFWNDLYITPVHDENGILTHFVGVQNDVTERIEAARQTETN 1114

Query: 433  VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
             +     +D  +EG+     DG+   SN     L   E      G  +  +A  C    N
Sbjct: 1115 ERTIRLLLDSTAEGLFGLDVDGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGN 1174

Query: 493  --ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVT 546
              E D   +  A+       R   +   +      +EY   P+         ++TFV++ 
Sbjct: 1175 PFEKDSLQILGAVRAGEAINRYDERFCRKDGESFPVEYWCHPIQEDGKIVGAVVTFVDIE 1234

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              ++ E  L E   A   A+E K+ F+ ++S+ELR+PL+ I+GFT +L+           
Sbjct: 1235 TRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQE---DPDEGTI 1291

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +Y+  I  +   LL L+ D+LDL+ ++A       S++ L +LL ++ +++  +  +  
Sbjct: 1292 QEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQDYQ 1351

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGDFIFS 722
              +       L  +   D  RL QI   +++NA+ F+ KG   V++++ +  D+   +  
Sbjct: 1352 NTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFLLLK 1411

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V ++G  I ++  +++F  FV        +  G GLGLSI +   N  GG + +SS++  
Sbjct: 1412 VIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSSTEGE 1471

Query: 781  VTTINCRIP 789
             +    R+P
Sbjct: 1472 GSEFTIRLP 1480


>gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 1131

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/647 (20%), Positives = 266/647 (41%), Gaps = 65/647 (10%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-------------NTETEGIVFQKA 236
           N + + + + + L    + RD+   +++AN  Y+                E  G+   +A
Sbjct: 193 NELDLLRTILEDLPVAAFVRDEKHRLVYANQYYETFSGHSRSRVLGLTEHEMFGLDGGEA 252

Query: 237 IGESRKLFKE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
           I +   L  E     EI+  + S      +    V+ +   + + Y    V+ SF +   
Sbjct: 253 IYQENLLALEGGTSKEIESLLPSKDGHIYSVLSRVNRVVTADGRPY----VVGSFSDISP 308

Query: 292 AID-----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA-- 344
             D     +  +            IL +L V + I D +  + + N  F  +WE+ L   
Sbjct: 309 LKDREKALIEAQKHKEVLHRDIENILRSLPVGVLILDNDHRILYVNDEFYGIWELPLDDP 368

Query: 345 -----FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                F+     N EL  +     + PE++    +++++F   +  E  +  W    G++
Sbjct: 369 FDGRPFIDVIRRNYELGRY--DGTQTPEEI--YDFRKHLFET-EEPEPIELGW--AGGKS 421

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETK-------YNTLVKVQGETIDHLSEGVAVFGP 452
           +            +  + ++T   + E +          L ++  +    + +G+AV   
Sbjct: 422 VIFDSRRISNDRILLTYADITAVREREKEIHEARAALERLGEMMRDATHAMPQGLAVV-Q 480

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--- 509
           DG IK+SN A   + +     L PG     +   C+      D  D    I+  + D   
Sbjct: 481 DGIIKMSNEALSDILQIPATYLEPGEGWIGMFEFCA---ARGDFHDAAGEILQGWRDNIA 537

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            R  +     +  +  +            +  F +VT+    E  L +       AD  K
Sbjct: 538 ARLPISTVFHVGGERWVNMDATVSKGQHWVALFTDVTELKSREEELRQLLSRAEAADRAK 597

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+P+  ++G  +LL  +   +L+++Q  +V+ I  S   LL ++NDILD
Sbjct: 598 SEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFVDIIVKSGNALLTIINDILD 654

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
            + +DAG MKL  +   + + + +V   +++   E NI + V +   L  + + D  R  
Sbjct: 655 FSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFR 714

Query: 689 QIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QI + ++ NA+ F+ +G   V +      G        +++ G  IP +  +SVF++F  
Sbjct: 715 QIVTNLVGNAVKFTERGHVFVDVGFQPAAGGEIMASIRIEDTGIGIPPEKLESVFDKFSQ 774

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 RR  G GLGL+I    ++L GG++++ S     +     +P
Sbjct: 775 VDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTINLP 821



 Score = 64.6 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 67/468 (14%), Positives = 138/468 (29%), Gaps = 91/468 (19%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM- 252
             + + D LD   + ++     +  N +Y +    E   F    G SR+L     ++   
Sbjct: 11  ACRRIAD-LDTPAYVKNSELRYVAVNEAYARFLGREISDF--IGGRSRELLDRPEEEDRE 67

Query: 253 -------------------ISSSALEKNFCETVSTLEHGNNK--SYKIVRVL-NSFGEAG 290
                               +  + E+   E+ S           +++      + G+ G
Sbjct: 68  DKERRALVFGTEENAICFDAAGLSHERIQIESFSPSLDRAYVLGIFEVREPTRRAIGDPG 127

Query: 291 IAID--VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE----------- 337
           IA D  ++ +  V        E L  L   I IF  +      N ++             
Sbjct: 128 IASDPGMTGDAGVAADFARVREALEQLDYPIGIFAGDGRPLVVNAAYRNDAKPAAVSDAA 187

Query: 338 --------------LWEIDLAFLA-----------------TNPSNDELLEFLRSANKLP 366
                         L ++ +A                    +  S   +L  L       
Sbjct: 188 WHESVNELDLLRTILEDLPVAAFVRDEKHRLVYANQYYETFSGHSRSRVLG-LTEHEMFG 246

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHL---PNGQTLHV------IVTSNPRGGTIWMFE 417
                  ++EN+ ++     T K+   L    +G    V      +VT++ R   +  F 
Sbjct: 247 LDGGEAIYQENLLAL--EGGTSKEIESLLPSKDGHIYSVLSRVNRVVTADGRPYVVGSFS 304

Query: 418 NLTVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           +++   D E            L +     +  L  GV +   D RI   N  F  +W+  
Sbjct: 305 DISPLKDREKALIEAQKHKEVLHRDIENILRSLPVGVLILDNDHRILYVNDEFYGIWELP 364

Query: 471 ENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +    G    ++         Y+ +   +          +  +     L       + +
Sbjct: 365 LDDPFDGRPFIDVIRRNYELGRYDGTQTPEEIYDFRKHLFETEEPEPIELGWAGGKSVIF 424

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               + N + +LT+ ++T     E+ + E   AL +  E+       +
Sbjct: 425 DSRRISNDRILLTYADITAVREREKEIHEARAALERLGEMMRDATHAM 472


>gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1637

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 157/789 (19%), Positives = 312/789 (39%), Gaps = 71/789 (8%)

Query: 44   LIRQRNSLAKKVNETYSFLSEICDQLSK-YHS------LLTENNCLTIVWDGKDETPEII 96
            L      L     E YS  +E+  ++++   +      LL       +  D       + 
Sbjct: 720  LQSTNEELQSVNEELYSVNAELQVRVNEVNEANADMVNLLATTRVGVVFLDDDLRVRRVT 779

Query: 97   GQLHQRIDI-PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
             ++ + + I P       SFE+++     I+  +  E++R   Q+ D   E + + + + 
Sbjct: 780  PEISRLLSIEPNDLGR--SFESFIHP---IQDDQFLERVR---QARDERVELEWEVSCRD 831

Query: 156  EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
               +  +  +LR   ++G+     +  +  ++    +  FK + D     +   DQ G I
Sbjct: 832  SSYLVRALPYLRNSEINGVVIAFVDVDI-LRRAERDVLKFKFMADQNIDALVLLDQKGKI 890

Query: 216  LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK-----RMISSSALEKNFCETVSTLE 270
             +AN   +K  +  G   ++ +G+    FK E        R+  + A   N  E  S L+
Sbjct: 891  SYAN---RKMCDQLGYSNEEILGQLLSRFKSETDPKSFDDRLEKAHAKGGNLFE--SWLQ 945

Query: 271  HGNNKSYKIVRVLNSFGEAG----IA--IDVSKEITVNDQLTHTYEILHNLTVAIAIFD- 323
              +   + +   L      G     A   D+S   T   Q+    E + +    I I D 
Sbjct: 946  QRDGTEFPVEVALTPVFLQGKQLLFASIRDISLRKTHESQMRLLSEAVQSAANGIVITDC 1005

Query: 324  --QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              ++  + F N+ F ++       +          E   +   L            I   
Sbjct: 1006 SLEDHPISFVNKGFTDMTGFSEQEILGRNCRFLQGEHTDNETVL-----------RIRRA 1054

Query: 382  YKSSETHKDTW--HLPNGQTLH--VIVTS-NPRGGTIWMF----ENLTVQVDLETKYNTL 432
                E+ ++    +  NG+     + +T  +   G +  F     ++T +++   +  T 
Sbjct: 1055 LGRGESVRELIKNYRKNGEPFWNDLYITPVHDENGILTHFVGVQNDVTERIEAARQTETN 1114

Query: 433  VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
             +     +D  +EG+      G+   SN     L   E      G  +  +A  C    N
Sbjct: 1115 ERTIRLLLDSTAEGLFGLDVHGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGN 1174

Query: 493  --ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVT 546
              E D   +  A+       R   +   +      +EY   P+         ++TFV++ 
Sbjct: 1175 PFEKDSLQILGAVRAGEAINRYDERFCRKDGESFPVEYWCHPIQEDGKIVGAVVTFVDIE 1234

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              ++ E  L E   A   A+E K+ F+ ++S+ELR+PL+ I+GFT +L+           
Sbjct: 1235 TRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQE---DPDEGTI 1291

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +Y+  I  +   LL L+ D+LDL+ ++A       S++ L +LL ++ +++  +  +  
Sbjct: 1292 QEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQDYQ 1351

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGDFIFS 722
              +       L  +   D  RL QI   +++NA+ F+ KG   V++++ +  D+   +  
Sbjct: 1352 NTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFLLLK 1411

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V ++G  I ++  +++F  FV        +  G GLGLSI +   N  GG + +SS++  
Sbjct: 1412 VIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSSTEGE 1471

Query: 781  VTTINCRIP 789
             +    R+P
Sbjct: 1472 GSEFTIRLP 1480


>gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 969

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/492 (23%), Positives = 198/492 (40%), Gaps = 26/492 (5%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLPEQL 369
            L N+   + + D +  +Q  NR  +EL ++  AF+A  P+   +  + L     +    
Sbjct: 333 TLENMDQGLMMVDADDRVQVCNRRALELLDLPAAFMAQKPTFTAVRNYQLAQNEFVRSDD 392

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
            ++ W   +       + H      PNG  L +       GG +  + ++T +   E   
Sbjct: 393 AFRAW---VARAGLEPKEHTYERERPNGTVLEIRTVPLAGGGAVRTYTDITARHGAEQAR 449

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                      D++S+ + +   DGR    +PA  ++          G  +        R
Sbjct: 450 RESEARYRLLADNVSDLIVLGHADGRRSYISPAVHAML---------GYTVEEAHRIGMR 500

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQTMLTF--- 542
            +   +      A  TS   ER +      L   +      E     + +A  +      
Sbjct: 501 EWLHPEDLGRVFATTTSLSPERPTASVVYRLRHKAGHYVWAEAVFQRVEDAGEVTIITAI 560

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT+ VR ER L +   A      +K  F+ ++S+ELR+PLT ++G  DLL      SL
Sbjct: 561 RDVTERVRQERRLEQAKVAAEAGARVKAEFLANMSHELRTPLTGMLGVHDLLAGD--TSL 618

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++ Q   +     +   LL +VNDILD + ++AG M +      L  L+   ++ +A   
Sbjct: 619 SAAQRHLIGLAQEAGRSLLAIVNDILDFSKIEAGQMAIERVPFSLRALVESCRELVAESA 678

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
               +R+    +G +   +V D  RL QI   + SNA+ F+ +G   + +++A   G   
Sbjct: 679 KGKPLRLVAEIEGDVPDWYVGDPTRLRQILLNLASNAVKFTPQGEIALRVRSAAGTGRVR 738

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  IP D    +F RF        R   G GLGL I +  + L GG + + S  
Sbjct: 739 VEVTDTGIGIPADKLPLLFERFSQADTSTTRQYGGTGLGLVICKRLVELMGGAIGVESIP 798

Query: 779 EGVTTINCRIPS 790
              +T    +P 
Sbjct: 799 GQGSTFWFELPL 810


>gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 995

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/631 (20%), Positives = 246/631 (38%), Gaps = 39/631 (6%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA----IGES 240
            + L       + + D+    +   D+ G I++AN + +          Q+     +   
Sbjct: 371 EQDLRTERDFIEKVADTSPICITKVDRNGYIVYANHAAEMVLGLSKSKIQERTYDDVKWK 430

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEH------GNNKSYKI------VRVLNSFGE 288
              F      +      L + + E V  + H      G  K   I             G 
Sbjct: 431 ITDFDGNYYPQEELPFELVQKYLEPVYDVRHAIQWPDGQRKLLSINAAPIFDDYNRFDGL 490

Query: 289 AGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
                ++S++I    +L  + +       +  + I + +++ Y    N +   +      
Sbjct: 491 VAAIENISEKIEKERELKESEKKFRNYIDHSPIGIFVANKDGYYVDVNPAASSITGYTRD 550

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            L +    D     L   + L +      +   +    K+S            +   +  
Sbjct: 551 ELLSMNLID-----LHPQDVLEQIYQAYNY---LVENGKTSVELPFITKKSELRYFILDA 602

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                   +    ++T +  +E +           I+  ++ +     DG I   N    
Sbjct: 603 VKLSDDKYLGFTTDITERKKVEDELKESEGRFRTVIEQAADAIIAHDFDGNILYVNDLTC 662

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD---LFAAIITSFDDERKSLQGTLELL 521
                 ++ L     + +I      Y      WD     ++ +    + RK        +
Sbjct: 663 DNLGYTKDELLSMN-LADIDPNIDTYEPRKRYWDKLSYHSSYLIETVNRRKDGSEFPVEV 721

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +++  S  P+     +    ++T   +AE  L         A++ K+  + +VS+ELR
Sbjct: 722 KMTLMNLSGKPV----ILGFVRDITVRKQAEEKLINAKLEAEAANQAKSELLANVSHELR 777

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT+IIGF+D++   K+G LN  Q++Y++ I  S   LL+L+NDILDLA +++G ++L+
Sbjct: 778 TPLTSIIGFSDVILKRKVGDLNDNQTRYLDKIHKSGQHLLDLINDILDLAKIESGKLELH 837

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              I +  LLN+++  +     +  + +    D  +    AD  +L QI   ++ NA+ F
Sbjct: 838 REKISIPALLNDLESKLYPFASKKGLSLDSEIDPNIEYIYADEIKLRQILYNLIYNAIKF 897

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLS 759
           ++KGS V +   + N  + FSV + G  IPED    +F  F         +  G GLGL+
Sbjct: 898 TNKGS-VTVTVRQKNDAYQFSVIDTGIGIPEDKQDEIFESFRQLDTGASRRYAGTGLGLA 956

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +V+  + +HGG + + S +   TT    IPS
Sbjct: 957 LVKRLVEIHGGQIWVESEESKGTTFTFTIPS 987



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/431 (14%), Positives = 142/431 (32%), Gaps = 49/431 (11%)

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY--EILHNLTVAIAIFDQNRY 327
           E G    +++    +    A   ++   ++   ++   T   ++L +  V I I D   +
Sbjct: 211 ERGKQLFHEVT---SDISYALYNLESENKLIEKEERHRTIVDDVLDSSKVGIFILDSCFH 267

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--------ANKLPEQLNWKTWKENIF 379
           + + N    + + ID   +        + + L+         AN+L    +  ++ EN  
Sbjct: 268 VVWINEPMEDYFGIDREDIIGKDKRQLVEDKLKHIFEDSDEFANRLLATYDDNSYIENFE 327

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                    ++ W          I +    GG I  + ++T +  +E    T      + 
Sbjct: 328 CHVLPDSNREERWLE---HWSQPIKSGLYAGGRIEHYYDITYRKIIEQDLRTERDFIEKV 384

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            D     +     +G I  +N A   +    ++++   T+            N     +L
Sbjct: 385 ADTSPICITKVDRNGYIVYANHAAEMVLGLSKSKIQERTYDDVKWKITDFDGNYYPQEEL 444

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              ++  + +    ++  ++         SI   P       +      V A   ++EK 
Sbjct: 445 PFELVQKYLEPVYDVRHAIQWPDGQRKLLSINAAP---IFDDYNRFDGLVAAIENISEKI 501

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+  E +  F  ++ +   SP+   +      K      +N   S    Y       
Sbjct: 502 EKERELKESEKKFRNYIDH---SPIGIFVAN----KDGYYVDVNPAASSITGYTRDE--- 551

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS---DGK 676
           LL++  +++DL                  D+L ++ Q+    +      +++       +
Sbjct: 552 LLSM--NLIDL---------------HPQDVLEQIYQAYNYLVENGKTSVELPFITKKSE 594

Query: 677 LGSFVADRQRL 687
           L  F+ D  +L
Sbjct: 595 LRYFILDAVKL 605



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 93/297 (31%), Gaps = 28/297 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R   L      ++E   K ++L      F+   D     ++  ++ G  +  N +    T
Sbjct: 486 RFDGLVAAIENISEKIEKERELKESEKKFRNYIDHSPIGIFVANKDGYYVDVNPAASSIT 545

Query: 227 E--TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-L 283
               + ++    I    +   E+I +         K   E     +    + + +  V L
Sbjct: 546 GYTRDELLSMNLIDLHPQDVLEQIYQAYNYLVENGKTSVELPFITKKSELRYFILDAVKL 605

Query: 284 NSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           +     G   D+++   V D+L         ++     AI   D +  + + N    +L 
Sbjct: 606 SDDKYLGFTTDITERKKVEDELKESEGRFRTVIEQAADAIIAHDFDGNILYVN----DLT 661

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
             +L +      +  L +     N    +   + W +     Y SS   +      +G  
Sbjct: 662 CDNLGYTKDELLSMNLADI--DPNIDTYEPRKRYWDKL---SYHSSYLIETVNRRKDGSE 716

Query: 400 LHVIVTSNPRG-----GTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLS 444
             V V             +    ++TV+   E K            + + E + ++S
Sbjct: 717 FPVEVKMTLMNLSGKPVILGFVRDITVRKQAEEKLINAKLEAEAANQAKSELLANVS 773


>gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 1118

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/713 (18%), Positives = 282/713 (39%), Gaps = 85/713 (11%)

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
               +L +      ++G+   + A  +N      +    G  A+                
Sbjct: 136 EALEQLDQPIGIFAEDGRPLVVNAAYRNG----AKPAAVGDTAW---------------- 175

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----KNTETEGIVFQKA 236
                +  N + + + + + L    + RD+   +++AN  Y+       +   G+   + 
Sbjct: 176 ----HESVNELDLLRTILEDLPVAAFVRDEKHRLVYANQYYETFSGHSRSRVLGMTEHEM 231

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN-----NKSYKIVRVLNSFGEAGI 291
            G      +   ++ +++    +    E++   + G+     ++  ++V         G 
Sbjct: 232 FGPDG--GEAIYQENLLALQGGKSKEIESLLPSKDGHIYSVLSRVNRVVTADGRPYVVGS 289

Query: 292 AIDVSKEITVNDQL-----------THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
             D+S        L                IL +L V + I D +  + + N  F  +WE
Sbjct: 290 FSDISPLKEREKALIEAQKHKEVLHRDIENILRSLPVGVLILDNDHRILYINDEFYGIWE 349

Query: 341 IDLA-------FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           + L        F+     N EL  +     + PE++    +++++F   +  E  +  W 
Sbjct: 350 LPLDDPFDGRPFIDVIRRNYELGRY--DGTQTPEEI--YDFRKHLFET-EEPEPIELGW- 403

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT-------LVKVQGETIDHLSEG 446
              G+++            +  + ++T   + E + +        L ++  +    + +G
Sbjct: 404 -AGGKSVIFDSRRISNDRILLTYADITAVRERENEVHEARAALEHLGELLRDATHAMPQG 462

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +A+   DG IK+SN A   + +     +  G     +   C+      D  +  A I+  
Sbjct: 463 LAIV-QDGIIKMSNEALAHILEIPATYIETGQGWLGMFDFCA---ARGDFHEDAAEILQG 518

Query: 507 FDD---ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           + D    R  +     +  +  +            +  F +VT+    E  L +      
Sbjct: 519 WRDNIAARLPISTAFHVGGERWVNMDATVSKGQHWVALFTDVTELKGREEELRQLLSRAE 578

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            AD  K+ F+ ++S+E+R+P+  ++G  +LL  +   +L+++Q  +V+ I  S   LL +
Sbjct: 579 AADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFVDIIVKSGNALLTI 635

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILD + +DAG MKL  +   + + + +V   +++   E NI + V +   L  + + 
Sbjct: 636 INDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIG 695

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSV 738
           D  R  QI + ++ NA+ F+ +G   V +      G        +++ G  IP +  +SV
Sbjct: 696 DAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQPAAGGEIMACIRIEDTGIGIPSEKLESV 755

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F++F        RR  G GLGL+I    ++L GG++++ S     +     +P
Sbjct: 756 FDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTINLP 808



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/454 (13%), Positives = 127/454 (27%), Gaps = 76/454 (16%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
             + + D LD   + ++     +  N +Y +    E   F      SR+L     ++   
Sbjct: 11  ACRRIAD-LDTPAYVKNSELRYIAVNEAYARFLGREISDF--IGRRSRELLDRPEEEERE 67

Query: 254 SSSALEKNF-------CETVSTLEHGNNKSYKIVRVLNSFGEAGI-----AIDVSKEITV 301
                   F       C   + ++H   +        +     GI     A   + + + 
Sbjct: 68  DKERRALVFGTEENAICFDAAGVDHERIQIESFSPSPDRAYVLGIFEVRAAPRRAADDSA 127

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE------------------------ 337
                   E L  L   I IF ++      N ++                          
Sbjct: 128 AADFARVREALEQLDQPIGIFAEDGRPLVVNAAYRNGAKPAAVGDTAWHESVNELDLLRT 187

Query: 338 -LWEIDLAFLA-----------------TNPSNDELLEFLRSANKLPE------QLNWKT 373
            L ++ +A                    +  S   +L         P+      Q N   
Sbjct: 188 ILEDLPVAAFVRDEKHRLVYANQYYETFSGHSRSRVLGMTEHEMFGPDGGEAIYQENLLA 247

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT-- 431
            +       +S    KD         ++ +VT++ R   +  F +++   + E       
Sbjct: 248 LQGGKSKEIESLLPSKDGHIYSVLSRVNRVVTADGRPYVVGSFSDISPLKEREKALIEAQ 307

Query: 432 -----LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                L +     +  L  GV +   D RI   N  F  +W+   +    G    ++   
Sbjct: 308 KHKEVLHRDIENILRSLPVGVLILDNDHRILYINDEFYGIWELPLDDPFDGRPFIDVIRR 367

Query: 487 CSR--YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                 Y+ +   +          +  +     L       + +    + N + +LT+ +
Sbjct: 368 NYELGRYDGTQTPEEIYDFRKHLFETEEPEPIELGWAGGKSVIFDSRRISNDRILLTYAD 427

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +T     E  + E   AL    E     ++  ++
Sbjct: 428 ITAVRERENEVHEARAAL----EHLGELLRDATH 457


>gi|170741503|ref|YP_001770158.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195777|gb|ACA17724.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 973

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/492 (23%), Positives = 193/492 (39%), Gaps = 26/492 (5%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE-QL 369
            L N+   + + D +  +Q  NR  +EL ++  AF+A  P+   +     + N+      
Sbjct: 334 TLENMDQGLMMIDADDRVQVCNRRALELLDLPPAFMARKPTFTAVRNHQLAHNEFAHSDE 393

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
            ++TW   + +       H      PNG  L +       GG +  + ++T +   E   
Sbjct: 394 AFRTW---VATAGLEPREHTYERERPNGTVLEIRTVPLAGGGAVRTYTDITARHGAERAR 450

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                      D++S+ + +   DGR    +P+  ++             +        R
Sbjct: 451 RESEARYKVLADNVSDLIVLGHADGRRSYISPSVHAMLGYA---------VEEAHRIRVR 501

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQTMLT---F 542
                D  +  +A   S   ER +      L   +     +E +   + +A  +      
Sbjct: 502 DCLHPDDLNRVSAAAASLSRERPTASVVFRLKHKAGHYVWVEAAYKRIEDADEVTIVTAI 561

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT  VR ER L             K  F+ ++S+ELR+PLT ++G  DLL      SL
Sbjct: 562 RDVTQRVRQERHLERARVEAEAGARAKAEFLANMSHELRTPLTGMLGVHDLLAGDA--SL 619

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q   V     +   LL +VNDILD + ++AG M +      L  L+   +  +A   
Sbjct: 620 SDAQRHLVGLAQEAGRSLLAIVNDILDFSKIEAGQMAIESVPFSLRALVESCRALVAESA 679

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFI 720
            +  +R+    +G     FV D  RL QI   + SNA+ F+ +G     +  A   G   
Sbjct: 680 KDKPLRLVTDIEGDAPDRFVGDPTRLRQILLNLASNAVKFTPRGEITMRVGFAASTGRVR 739

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  IP D    +F RF        RR  G GLGL I +  + L GG + + S  
Sbjct: 740 VAVTDTGIGIPADKLPLLFERFSQADASTTRRYGGTGLGLVICKRLVELMGGTIGVESVP 799

Query: 779 EGVTTINCRIPS 790
              +T    +P 
Sbjct: 800 GRGSTFWFELPL 811


>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1363

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/840 (17%), Positives = 311/840 (37%), Gaps = 89/840 (10%)

Query: 1    MMAGMATIGIGKGIEIC-TLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETY 59
            ++A +A + +   + +       ++     I G  L +I+  + ++     + +     Y
Sbjct: 263  VLALIAALLVPIALVLLDAALGLRVDTIPLIVGTSLMSILATVRMV----GILRDHQRDY 318

Query: 60   SFLSEICDQLSKYHSLLTENNCLTIVWDGKDE-TPEIIGQLHQRIDIPQTDTDLL----S 114
              L E      ++ +LL     +       D  + E +    + I    +D +LL    S
Sbjct: 319  DRLQESE---RRFATLLANTPAMVYRRRQDDRWSLEFVSSYAREI-TGYSDAELLGGKVS 374

Query: 115  FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND----CAIKIEG---RVSGSCAFLR 167
                +       ++     +   GQ + L    ++       ++  G   RV+       
Sbjct: 375  LRELVHPEDLPAVTANLRGVSSPGQRYRLEYRLRHRDGSLRFVEEYGQCVRVTEGMPL-- 432

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
               L+G+ +++ +     + +      ++ +F+ +   ++     G +L AN +  +   
Sbjct: 433  ---LEGLLTDVTDRKHAEQAVQQVQRRYQDIFERISEGIFQTSLDGRLLLANPALARMLG 489

Query: 228  TEGIVFQKAIGESRKLFKE-EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
                          +L  E +   R I +   +++    +  LE G  + +++  V    
Sbjct: 490  YASPE---------ELLSEVQDVARQIYARPADRDRYLRI-MLEEGEVRDFELEAVRKDG 539

Query: 287  GEA--------------------GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIF 322
                                   G   D+++     + L  + E+      +  + +A+ 
Sbjct: 540  EHIWLSISSRWLLDEARGMRIIEGTCQDITQRKRAEEALRESMELFVSAFDHAPIGMALV 599

Query: 323  DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
              +      N S   +       L          +     +    +L+ +  ++ +    
Sbjct: 600  ATDGRWLRVNPSLCRMLGYSERELLG----MTFQDITHPDDL---ELDLQHVRQVLDGEI 652

Query: 383  KSSETHKDTWHLPNGQT---LHVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQ 436
               E  K  +H         L V +  +  G  ++     +++T + ++E       +  
Sbjct: 653  AQYEMEKRYYHKHGSIVWALLSVSLVRDLDGQPLYFVSQIQDITQRKEIERAITESEERY 712

Query: 437  GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR--YYNES 494
               ++   + +A+   DGR+   NPA   +   ++ +   G  +        R     + 
Sbjct: 713  RRLVEAFPDLIAIV-QDGRVAYVNPAGARMLGAKDPQELVGRSVLEFVHPERRGEVAAQI 771

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            D          S ++   +L G        V+  S    P +Q +    ++T+S R    
Sbjct: 772  DSIGEGGPPPDSIEERFITLDGREIYAEVKVVPTSHEDRPASQIIA--RDITESRRVAEE 829

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L    +   +A  +K+ FV ++S+E+R+PL  IIG T+LL+ +    L+ +Q ++V+ I 
Sbjct: 830  LRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDT---PLSERQREFVQTIQ 886

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             SS  LL+++NDILD + ++AG M L      L  L+    + +A       I +    D
Sbjct: 887  TSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLMTFVD 946

Query: 675  GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729
              +  + + D  RL Q+   +LSNA+ F+ +G  ++     +AA    + +F V++ G  
Sbjct: 947  PTIPRTLIGDPARLRQVLLNLLSNAVKFTEQGEVLLRVLPHRAADSEVELLFEVRDTGIG 1006

Query: 730  IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I       +F  F        RR  G GLGL+I ++ + L GG +   S     +T    
Sbjct: 1007 IDSAHLGKLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTIWAESQPGVGSTFRFT 1066


>gi|254504351|ref|ZP_05116502.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11]
 gi|222440422|gb|EEE47101.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11]
          Length = 1190

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/657 (18%), Positives = 247/657 (37%), Gaps = 35/657 (5%)

Query: 164 AFLRILSLDGIYSE-LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
           A  R+  L     E  A       +     +    + +++   V     +GD+L AN + 
Sbjct: 264 ALTRVHDLADAEREKNAALEAAIIRAETGEAQVNAVLETMLDGVVTLSPSGDLLSANPAA 323

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMI--------SSSALEKNFCETVSTLEHGNN 274
            +    +             +F +E    +         +    +KN  E       G+ 
Sbjct: 324 LQMFGVQSFEDLSGK-RICDIFPDEDAHVLPFACCSGKSAPLETDKNRFEVTGRRFDGSL 382

Query: 275 KSYKI----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNR 326
              ++      V        I  D++++     +L      L     +L     ++D   
Sbjct: 383 YPVELSLSKTIVEGQDTYTAILRDLTEQKAAAAKLQQVETRLVDAIESLPDGFVLYDAED 442

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSS 385
            L   N  + E +      +    + +E++       +     +  + W E     +++ 
Sbjct: 443 RLVLCNSKYKEFYSSSADLIRPGRTFEEIIREGAQRGQYQVTGDALEDWVELRMENHRNP 502

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
               +  HL +G+ L VI +    GG +    ++T     E +  +   +    +    +
Sbjct: 503 GAPMEQ-HLDDGRWLRVIESRTSEGGMVGFRVDITELKKREQELVSSQGLLRNVVSASFD 561

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G+ V    G +   +PA   ++      L        I     R  +++           
Sbjct: 562 GIIVMDGSGTVLDFSPAAEEVFGWSAVELVGRKMSDYIIPEKYRAMHDAGLEKFLKTGEG 621

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEAL 562
               +R  ++G      + ++E +I      +    +    ++T+   AE AL    E  
Sbjct: 622 PVLGKRIEIEGLHREGHEIIVELAIRHTRGEKGPLFLGYVRDITERKAAEEALRVAKEKA 681

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A+E K  F+  +S+E+R+P+  ++G   LL+ +    L+  Q  YV+    S   LL 
Sbjct: 682 EAANEAKAQFLAMMSHEIRTPMNGVLGILSLLRDT---DLDPVQKAYVKTARESGRSLLE 738

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+NDILD + ++AG  +L  +   L  ++  +         E  + I +     +   V 
Sbjct: 739 LINDILDFSKLEAGRTELEKAPFRLKTVVKSIADLFMPIAQEKGLTIDLNYPADVPQVVS 798

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCK 736
            D  RL Q+   ++SNA+ F+  GS + +  + D  D     F F+VK+ G  I +D  +
Sbjct: 799 GDAGRLRQVLLNLVSNAVKFTEIGS-IDISVSLDEDDPVQPVFRFTVKDTGIGIAKDKHQ 857

Query: 737 SVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++F  FV    ++  ++ G GLGL+I +   +L  G + + S     +T +  +P +
Sbjct: 858 TLFGDFVTIDTSYTKKQGGTGLGLAISKRLSSLMDGEIHVESLPGAGSTFHFCVPLE 914


>gi|126730008|ref|ZP_01745820.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126709388|gb|EBA08442.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 841

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/570 (20%), Positives = 232/570 (40%), Gaps = 26/570 (4%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
            + +  ++    + +   E  +K +  ++    +    +S            VR  +   
Sbjct: 4   ADRLAEERRARLAAERLLELKQKELFEANKRLGDHALKLSHEIRETRHEVAEVRSQHKRV 63

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
              +     K   V +QL    E +       A+FD+ R L+  N +++ ++E       
Sbjct: 64  VQELGQATEKIEVVTEQLWSAMETIR---DGFAMFDEERRLELANPAYLSVFEGLDHIAP 120

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
             P  D L  F        +  + K W+  + + ++       T  L NG+ + V     
Sbjct: 121 GVPYPDILATFAEEGLIDLQGEDPKGWQLRMLARWEQDPIPNTTLRLWNGRFVKVRERHL 180

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           P GG + +  ++T  + +              ++ L +G  ++  + R+ + N  +R  +
Sbjct: 181 PDGGIVSLTVDITDLMRM-----------WSAVEELPDGFVIYDAEDRLLMCNQPYRDYY 229

Query: 468 KTEENRLSPGTHIRNIAA--TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           K     + PGT   +I      +  Y E+ G +               L+   +L     
Sbjct: 230 KASAPAMVPGTTFEDILRYGLKNGQYAEAVGREEEWLEDRLTKHRFAELEHEQQLDDGRW 289

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           L        +   +   V++T     ++ L E       A+  K++F+ ++S+E+R+P+ 
Sbjct: 290 LRIYERETTDGGRVGLRVDITQIKEDQQRLKEATIRAEAANRAKSAFLANMSHEIRTPMN 349

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G  DLL+ ++   LN +Q  Y + I +S   LL ++NDILD + ++A  + LN    
Sbjct: 350 GVVGMADLLRETE---LNDEQKLYADTIRSSGEALLVIINDILDYSKIEAEKLVLNPEPF 406

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L   +++V   +     + +I + V  D  L   FV D  R+ QI + ++ NA+ F+ +
Sbjct: 407 DLERAIHDVVMLLQPTARDKDITLLVDYDMFLPTHFVGDPGRVRQILTNLVGNAVKFTVQ 466

Query: 705 GST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
           G   V +    ++G       +V++ G  IP D  + VF  F  V +    +  G GLGL
Sbjct: 467 GYVLVRVVGVMEDGGSTAVHITVEDTGIGIPADKVEHVFGEFNQVEDERNRKFEGTGLGL 526

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I    + L GG V + S     +    RI
Sbjct: 527 AITRRLVELMGGEVWVESEPGRGSFFGLRI 556


>gi|83312715|ref|YP_422979.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947556|dbj|BAE52420.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 870

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 108/510 (21%), Positives = 200/510 (39%), Gaps = 27/510 (5%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A+D S+             IL N+   I+++D +  L   N  F EL  +         +
Sbjct: 368 ALDTSRRELSTKS-RTLETILDNIAQGISVYDDDLRLVACNHRFGELLRLPPDMTRPGTA 426

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
            ++ L F     +     + +        + ++ + H+      +G  L VI    P GG
Sbjct: 427 LEDYLRFNARRGEYG-PGDPEAHVAERMDLARNFQPHRFQRQRADGTALEVIGNPLPGGG 485

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +    ++T     E    TL +     ++     V +  P G I   NP F  +     
Sbjct: 486 FVATHTDITEARRAEEALRTLSR----AVEQSPVSVIITDPRGNIDYVNPKFMEV----- 536

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLE 527
                G  +  +     R        D   A +        + +G L+    +       
Sbjct: 537 ----CGYTLEEVRGLNPRLLKSGLTQDAVYADLWRTITAGGTWEGELQNRRKNGELYWER 592

Query: 528 YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            SI P+ +        +    ++T    AE AL    +A   A+  K  F+ H+S+ELR+
Sbjct: 593 ASISPIRSPDGAILHYLAVKEDITARKAAEDALVAAMQAAEDANRAKTVFLSHMSHELRT 652

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT ++G+T++L++   G L S+ + +V  IS S   LL++++++LD++ ++ G  ++  
Sbjct: 653 PLTAVLGYTEMLESGMAGPLPSQHADFVAAISDSGRHLLSIIDEVLDISRIELGSYRIAT 712

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               L  +  E    +  +    +I++ +   G +   V D + + Q+   +L NA+ ++
Sbjct: 713 GPTDLRSIAQECVGMLRPQCVAKDIQLDLEEGGAMP-LVTDSRAVRQVLINLLGNAVKYT 771

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
             G  + +   R        V + G  I  D    VF  F           RGVGLGL+I
Sbjct: 772 EAGGRISVGLTRAGQTLRVVVADTGCGIATDKLAHVFEPFQRVDPLRADPARGVGLGLAI 831

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
               + L  G ++I S     T +   +P 
Sbjct: 832 CRRIVELLHGDIAIQSEPGRGTAVTLTLPL 861


>gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
 gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
          Length = 861

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 118/579 (20%), Positives = 238/579 (41%), Gaps = 44/579 (7%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL--EHGNNKSYKIVRVLNS 285
            E    + A     +L + E+       +   +     + +   E    ++ +  RV + 
Sbjct: 8   AEERRARLAAERLLELKQAELFAANRKLNKHARALSNEIHSTRAEISEVRT-ENRRVKSE 66

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            GEA + I++ +           ++ L ++    A F   R ++  N +++  +E  L  
Sbjct: 67  LGEAHVKIEMVE--------GQLWKALQSMRDGFATFSAERMMELANPAYLAPFE-GLDT 117

Query: 346 LATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           +    S   +LE +     +  Q    ++W E + + +       +T  L  GQ + +  
Sbjct: 118 IGPGASYRHVLEMMVEEGIVDLQGEPRRSWHERMTARWDMDPIPSETLRLWTGQFIKMQD 177

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
              P GG + +  ++T  + +              ++ L +G  ++  + R+ + N  +R
Sbjct: 178 RHLPDGGVVSLCVDITELMRM-----------WSALEELPDGFVIYDAEDRMLMCNEPYR 226

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER------KSLQGTL 518
           +++K     + PG    +I     RY  E   +         + +ER       S +   
Sbjct: 227 AIYKASAPAIVPGASFEDIL----RYGLERGQYAAAVGREEDWLEERLSAHRHASHEMEQ 282

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +L     L     PL +   +   +++TD    +R L E       A   K+SF+ ++S+
Sbjct: 283 QLGDGRWLRIYERPLRDGGRVGLRIDITDVKDTQRELEEARIRAETASRAKSSFLANMSH 342

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  ++G  +LL+ S    L  +Q  YV+ I  S   LL ++NDILD + ++A  +
Sbjct: 343 EIRTPMNGVVGMAELLRES---PLTDEQRLYVDTIRGSGEALLVIINDILDYSKIEADKL 399

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
           KL+  +  L   ++EV   +     E  + +    D  L    V D  R+ QI + ++ N
Sbjct: 400 KLSAESFDLERAVHEVLLLLQPTAREKGLEMLAEYDMFLPQRVVGDPGRVRQILTNLVGN 459

Query: 698 AMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           A+ F+++G  ++      +     D   +V++ G  +P D  + +F  F        R  
Sbjct: 460 AVKFTNEGHVLVRVLGLRHAHGALDVRITVEDTGVGVPADKIEHIFGEFNQAEDDRNRPF 519

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGL+I +  + +  G + + S     +    RIP 
Sbjct: 520 EGTGLGLAITKRLVEMMEGEIWVKSEPGQGSCFGLRIPL 558



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/328 (12%), Positives = 105/328 (32%), Gaps = 44/328 (13%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW----- 207
           +    R     A      +    +E++E   + +++ + +    V  + ++  +W     
Sbjct: 28  LFAANRKLNKHARALSNEIHSTRAEISEVRTENRRVKSELGEAHVKIEMVEGQLWKALQS 87

Query: 208 HRD------QAGDILWANISYKKNTETEGIVFQKA---------IGESRKLFKEEIKKRM 252
            RD          +  AN +Y    E    +   A         + E     + E ++  
Sbjct: 88  MRDGFATFSAERMMELANPAYLAPFEGLDTIGPGASYRHVLEMMVEEGIVDLQGEPRRSW 147

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIV-----RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                      +                     R L   G   + +D+++       L  
Sbjct: 148 HERMTAR---WDMDPIPSETLRLWTGQFIKMQDRHLPDGGVVSLCVDITE-------LMR 197

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
            +  L  L     I+D    +   N  +  +++     +    S +++L +     +   
Sbjct: 198 MWSALEELPDGFVIYDAEDRMLMCNEPYRAIYKASAPAIVPGASFEDILRYGLERGQYAA 257

Query: 368 QLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV----Q 422
            +   + W E   S ++ + +H+    L +G+ L +       GG + +  ++T     Q
Sbjct: 258 AVGREEDWLEERLSAHRHA-SHEMEQQLGDGRWLRIYERPLRDGGRVGLRIDITDVKDTQ 316

Query: 423 VDLET---KYNTLVKVQGETIDHLSEGV 447
            +LE    +  T  + +   + ++S  +
Sbjct: 317 RELEEARIRAETASRAKSSFLANMSHEI 344


>gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 975

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 152/828 (18%), Positives = 295/828 (35%), Gaps = 68/828 (8%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNE--- 57
           ++     +     I +   F  ++        +LL       +L+RQ+     +      
Sbjct: 155 VLLASPVLNSDHAIAVWGFFVAQLLSVLMALALLLE------VLMRQQAVAESEGQRANL 208

Query: 58  TYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS--F 115
             S L +    +    +L      L       D   + +  + + I   +   D++   F
Sbjct: 209 LQSRLVDALSSVQDGVALFDPRERLV---TANDLYRQFMAPVAEIIKPGRLFQDIVDAEF 265

Query: 116 ENWLK------FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL 169
           E  +                A   ++         AE  +   + I    +    +LRIL
Sbjct: 266 EMGVVRQECEVVRSGKLADHAVPAVQG------CEAELFDGRWVSINVYPTADGGYLRIL 319

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-- 227
                  ++         L + ++  + + +++   +   D    IL  N + ++     
Sbjct: 320 RDVTARRQVT------ASLHDSVTWLRGIMNTVVDGIITIDDTASILSFNAAAERIFGYG 373

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIV 280
            +  V +       + +  E    M   +   +     +     G  K          + 
Sbjct: 374 ADETVGRNVSMLMPEPYHSEHDDYMRRYAETGEARVIGIGRQVKGKRKDGTVFPLELAVT 433

Query: 281 RVLNSF--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRS 334
           R+         G+  D++    V D L  + +   +L  + + +    D +    F +  
Sbjct: 434 RMNQGGLITYIGLVRDITDRKRVEDALVESEQRFRDLAESASDWFWELDADLRFTFVSGR 493

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
             ++  +   +    P       F   A    +  +W   +  I    +          +
Sbjct: 494 VRQVLGVGPGYFIGRP-------FSDLATSCEDPRDWDVQQSLIRGR-RPFRGFIFVHPM 545

Query: 395 PNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           P+G    V +   P         G      ++T     E +  T   ++   ID++ +GV
Sbjct: 546 PSGAVKFVEMAGRPAFDADGKFDGYRGTAADITPLKRHEQELATQSAMRQTIIDNMGQGV 605

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITS 506
            VF  D R+   N   R L    E  +  GT  +  +    +          +   +   
Sbjct: 606 VVFDGDERLVALNSHARQLLDLPETEIETGTSNLEALLLYLAVQGEFGHSGAIMVKVQRR 665

Query: 507 FDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
               R+  +   E    + SVLE     +P    +LTF ++TD  + E  L E  +A  +
Sbjct: 666 LARLRRDPRRVFEHARPNGSVLEIRSTAMPGGGLILTFTDITDRKKVEVTLREARDAAER 725

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623
            +  K +F+ ++S+ELR+PL  IIGF++L+K    G L       YV+ +  S   LL L
Sbjct: 726 GNRAKATFLANISHELRTPLNAIIGFSELMKHEIFGPLQPPAYRSYVDDVHESGMHLLEL 785

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDILD++  +AG+  L  S + +  ++    + +  +   N I ++      L    AD
Sbjct: 786 INDILDMSKAEAGMTDLVESPVDVAAVVRASLRMMDKRASANGISLEADLPDGLAFLRAD 845

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +R+ QI   +LSNA+ F+  G  V + A  D    +  V + G  +  +    V   FV
Sbjct: 846 ERRIRQILLNLLSNAVKFTDDGGMVRVTAQVDGRGMVIEVIDTGIGMTPEDMDKVMEPFV 905

Query: 744 SNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   +  G GLGL + ++ +N HGG + + S  +  TT+    P
Sbjct: 906 QADTRLSRKYEGTGLGLPLTKALVNAHGGTMELHSIPDHGTTVTVTFP 953


>gi|83312195|ref|YP_422459.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947036|dbj|BAE51900.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 657

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 121/648 (18%), Positives = 232/648 (35%), Gaps = 59/648 (9%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
            ++V + + D LD  +        ++  N  +    +         +G +  +     + 
Sbjct: 16  DMTVMQGVLDHLDQGISVFSADLRLILWNRRFTDLHDFPEGFLTHGLGFADIIRFNAQRG 75

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN-----------SFGEAGIAIDVSKEI 299
              S   +E      V          ++  R                G      DV+   
Sbjct: 76  EYGSDCDVEATVRHRVDAAMEFQAHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNR 135

Query: 300 TVNDQLTHTYEILH-----------------------------NLTVAIAIFDQNRYLQF 330
            V + L  + + L                              ++   + +FD +  L  
Sbjct: 136 QVAENLRDSNDRLDQMVERRTQALQDSEERHRAYGEFLEATVKHMPQGVCLFDNDLNLVV 195

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N+ F +L +I  +F     +  E + +     +     +          + +  E H  
Sbjct: 196 ANKIFFDLTQIPASFNVKGINFHEFMLYNAQRGEYG-PGDPAELANRRLEIARRMEPHAF 254

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
               P+G  + V     P  G I  F ++T +   E        +    +D     V + 
Sbjct: 255 DRIRPDGTVIEVRGNPIPGRGFISTFTDITARAKAEESLREAATMARAMLDAPGLLVLLI 314

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             DG I   N    +   + ++ +        +    +          +F      F+DE
Sbjct: 315 RMDGTIVDLNQEAATGLSSTKDAMIGANIFTVMPPKVAERRFAYAQQAVFEGHAVYFEDE 374

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKA 565
           R               E ++ P P  Q      M+   +VT    AE+ L E     + A
Sbjct: 375 R----------DGRWFETTMTPYPMDQDGVHRVMIIAHDVTHRHHAEQRLREATAMAQAA 424

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K  F+  +S+ELR+PL  I+GF++++     G +  +   Y + I+++   LL ++N
Sbjct: 425 NRTKTDFLAAMSHELRTPLNAILGFSEIIAREMFGPVGDRYRIYGQDINSAGQHLLAMIN 484

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILD++ ++ G   L    +  ++L++   + + T+     IR++      L S + D +
Sbjct: 485 DILDISRIEIGAFTLCVEQVNPHELVDSCLRLVTTRAEAAGIRLREDLPETLPSLMIDSR 544

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           R  QI   +L NA+ F+  G +V L+ A + +G   F V + G  + E       + F  
Sbjct: 545 RTKQILINLLGNAVKFTPAGGSVTLRGALQSDGGMAFHVADTGIGMSEADIAIALSPFGQ 604

Query: 745 NAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  +  G GLGL + +S   LHGG + I S+    TT++   P+
Sbjct: 605 VDTGLDRRFEGAGLGLPLAKSLAELHGGSLEIISTPGEGTTVSVYFPA 652


>gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 1092

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 109/634 (17%), Positives = 250/634 (39%), Gaps = 38/634 (5%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGESRK-- 242
           +   +++ + + L    + RD +  ++++N +Y         +  G    +         
Sbjct: 144 DETGLYRTILEDLPVASFVRDASHRLIYSNEAYAAITGLSRADVLGKTEHEMFETGADDY 203

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS------ 296
             + E         A E    +          +  ++V         G   D+S      
Sbjct: 204 FAENEQVLNEGRGLAFEGQVVDRQHVTHPIMTRINRVVTSDGKRYVVGSMNDISVLKLRE 263

Query: 297 -----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-LATNP 350
                 +            IL ++ + + I D +  +++ N +F ++W+          P
Sbjct: 264 TQLIEAQARAEALHQDLGSILRSMPIGVMIHDSDCNVEYTNDAFYDIWDFSKDERFEGRP 323

Query: 351 SNDELLEFLRSANKLPEQLNWKT-WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             D +++         +  +    ++  + + + +    +      +G+++ +       
Sbjct: 324 VRDLIVKHFELGRYGADAGDIDDIYQARMEASHNAGPNLQTEMSYADGKSVIMDSRRISN 383

Query: 410 GGTIWMFENLTVQVDLETK-------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           G T+  + +++     E +          L  +  +    +S+G+ +   DG I L+N A
Sbjct: 384 GRTLVTYADISSVRQQEREISEAHLALERLGDLMTDATHAMSQGLLIL-QDGIIMLANDA 442

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              +     + L+ G H       C+   +     +             K +     ++ 
Sbjct: 443 LTDMLLVPADCLAVGKHWSAAFDHCAARGDFGADPEALRFAWRENMAADKPVSMIFRVVG 502

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +  ++       + +  +   +VT+  + E  L         AD  K+ F+ ++S+E+R+
Sbjct: 503 ERWIQLEAAVSESRRWTVVLTDVTEMKKREAELQLLLARSEAADRAKSEFLANMSHEIRT 562

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  ++G  +LL  +    L+++Q  +++ I  S   LL ++NDILD + +DAG M+L  
Sbjct: 563 PMNGVLGMAELLAKT---DLDARQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMRLRK 619

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
           +     + + +V   +++   E +I + V +   + + V  D  R  QI + +L NA+ F
Sbjct: 620 AAFDPAEAVEDVATLLSSPAAEKDIELLVRATPAVPAMVLGDAGRFRQIVTNLLGNAIKF 679

Query: 702 SSKGST-VILKAAR-DNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + +G   V + +   DNG+ + +  V++ G  I ++   S+F +F        RR  G G
Sbjct: 680 TERGHVLVEVDSQPIDNGEVMLTLRVEDTGLGISKEKLDSIFEKFSQVDASSTRRHEGTG 739

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I    ++L GG++ + S     +T    +P
Sbjct: 740 LGLAITAGLVDLFGGYLEVDSEWGKGSTFTVHLP 773



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/416 (14%), Positives = 146/416 (35%), Gaps = 39/416 (9%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF----QKAIGESRKLFKEEIK 249
             + + D LD   + ++     +  N +Y +    +   F     + + ES +    E K
Sbjct: 17  ACRRIAD-LDQPAYVKNSDLRYVAVNQAYARFFRRDISDFIGNRSRDLFESGEEVDREDK 75

Query: 250 KRM------------ISSSALEKNFCETVSTLEHGNNK-----SYKIVRVLNSFGEAGIA 292
           +R                +   ++  +  S     +             V + F      
Sbjct: 76  ERRSLVFGSEETALCFDPAGHVRSRVQIESFSPSEDRLYVFGIFLDAPAVPSVFSSE--T 133

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            DV  +    D+      IL +L VA  + D +  L + N ++  +  +  A +    + 
Sbjct: 134 RDVGIQGESVDETGLYRTILEDLPVASFVRDASHRLIYSNEAYAAITGLSRADVLGK-TE 192

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            E+ E            N +   E     ++     +     P    ++ +VTS+ +   
Sbjct: 193 HEMFETGADDYF---AENEQVLNEGRGLAFEGQVVDRQHVTHPIMTRINRVVTSDGKRYV 249

Query: 413 IWMFENL-------TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +    ++       T  ++ + +   L +  G  +  +  GV +   D  ++ +N AF  
Sbjct: 250 VGSMNDISVLKLRETQLIEAQARAEALHQDLGSILRSMPIGVMIHDSDCNVEYTNDAFYD 309

Query: 466 LWKTEENRLSPGTHIRNIA----ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           +W   ++    G  +R++            +  D  D++ A + +  +   +LQ  +   
Sbjct: 310 IWDFSKDERFEGRPVRDLIVKHFELGRYGADAGDIDDIYQARMEASHNAGPNLQTEMSYA 369

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               +      + N +T++T+ +++   + ER ++E + AL +  ++       +S
Sbjct: 370 DGKSVIMDSRRISNGRTLVTYADISSVRQQEREISEAHLALERLGDLMTDATHAMS 425



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/382 (11%), Positives = 109/382 (28%), Gaps = 48/382 (12%)

Query: 89  KDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148
                +++G+    +     D      E  L     +         +           T+
Sbjct: 181 GLSRADVLGKTEHEMFETGADDYFAENEQVLNEGRGLAFEGQVVDRQHVTHP----IMTR 236

Query: 149 NDCAIKIEGR--VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
            +  +  +G+  V GS     +  +  +     +      +          +  S+   V
Sbjct: 237 INRVVTSDGKRYVVGS-----MNDISVLKLRETQLIEAQARAEALHQDLGSILRSMPIGV 291

Query: 207 WHRDQAGDILWANISYKKNTE------TEGIVFQKAIGESRKL---------FKEEIKKR 251
              D   ++ + N ++    +       EG   +  I +  +L           +  + R
Sbjct: 292 MIHDSDCNVEYTNDAFYDIWDFSKDERFEGRPVRDLIVKHFELGRYGADAGDIDDIYQAR 351

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
           M +S     N    +S    G +      R+ N       A D+S       +++  +  
Sbjct: 352 MEASHNAGPNLQTEMS-YADGKSVIMDSRRISNGRTLVTYA-DISSVRQQEREISEAHLA 409

Query: 312 LHNL-----------TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L  L           +  + I  Q+  +   N +  ++  +    LA         +   
Sbjct: 410 LERLGDLMTDATHAMSQGLLIL-QDGIIMLANDALTDMLLVPADCLAVGKHWSAAFDHCA 468

Query: 361 SA---NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +       PE L +  W+EN+     + +     + +   + + +    +       +  
Sbjct: 469 ARGDFGADPEALRF-AWRENM----AADKPVSMIFRVVGERWIQLEAAVSESRRWTVVLT 523

Query: 418 NLTVQVDLETKYNTLVKVQGET 439
           ++T     E +   L+      
Sbjct: 524 DVTEMKKREAELQLLLARSEAA 545


>gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1821

 Score =  366 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 134/668 (20%), Positives = 242/668 (36%), Gaps = 70/668 (10%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ E     + L +    F+ +F+     +      +G++L  N  Y    E  G    +
Sbjct: 899  DITERKQAERALHDSEERFRAIFEQASVGIALVTPSSGELLRVNQRY---CEITGYPESE 955

Query: 236  AIGESRKLFKEEIKKRMI-------SSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSF 286
             +G   +       +           S        E       G  +     I RV +S 
Sbjct: 956  LVGRRVQDITHPDDREQNIEYLQQLMSGKTSTYATEKRYIRNDGQYRWVYISISRVCDSE 1015

Query: 287  GEAGIAI----DVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
             +   A+    D+S       +L          L + + AI + +    +   N    +L
Sbjct: 1016 HKPNYALAVVEDISDRKATEAELRDSEAKFRAFLESASEAIIVTNAQGEIIVFNAKAEDL 1075

Query: 339  WEIDLAFLATN-------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
            +  +   +          P    +    R A+ L         K       +   T    
Sbjct: 1076 FGYNRTEIFGRNIEYLMPPRYHSIHTHHR-ADYLTHPSKRTMGKSQDLYAKRQDGTE--- 1131

Query: 392  WHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVD-----------LETKYNTLVKVQGET 439
            + +  G    +       G  +  F  ++T +             LE++         + 
Sbjct: 1132 FPIEVG----LSTIQTKNGTFVIAFLTDITERQQAEHEIKRLNQKLESQIRETETRYAQI 1187

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            ++   EG+ V    G     N A   +    E  +  G  I +        +  +    L
Sbjct: 1188 VELAEEGIWVTDVQGNTTYINQAMARMLGYTEVEIL-GHAIADFLPPGDNRFTSASSIPL 1246

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-----VNVTDSVRAERA 554
                +   + E ++  G     +      S  P+ + Q  L +      ++T+  +AE+ 
Sbjct: 1247 HPNQVHRQEVELRTKSG-----NTIWAYMSTSPVLDDQGNLLWSCALVYDITERKQAEKQ 1301

Query: 555  LTEKNEA-------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            L E NE        L +A  +K+ F+  +S+ELR+PL  I+G  + L+    GSL  KQ 
Sbjct: 1302 LRESNERISLANAELARATRLKDEFLASMSHELRTPLNAILGLAEALQEEVYGSLTPKQH 1361

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + +  I  S   LL+L+NDILDL+ +++G M L+ S + ++ L       I  +  + NI
Sbjct: 1362 KSLATIEQSGKHLLDLINDILDLSKIESGKMSLSVSLVSVDSLCESSLTFIKQQAQQKNI 1421

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKN 725
            R++      L     D +R+ Q+   +LSNA+ F+  G  V L+     D      SV +
Sbjct: 1422 RLEYHIAPGLSEIEVDERRIRQVLVNLLSNAVKFTPDGGKVSLQVTTDPDGEKLQLSVTD 1481

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  I  +    +F  FV       RR  G GLGL++V   + L GG +++ S     + 
Sbjct: 1482 TGIGIAPENLDKLFKPFVQLDSSLSRRYAGTGLGLALVRRIVELQGGSIALESEVGKGSC 1541

Query: 784  INCRIPSK 791
                +P K
Sbjct: 1542 FTVNLPWK 1549



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 136/446 (30%), Gaps = 50/446 (11%)

Query: 164 AFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANIS 221
           A +R+L  L    +           L  +      + ++LD +VW        +L+ + +
Sbjct: 505 AEVRLLTELANDLAYGISALRTQVALRQNKQRLDSILNALDDVVWSISATTDQVLYLSPA 564

Query: 222 ----YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS- 276
               Y +  +         +G        ++        A      E       G  +  
Sbjct: 565 TETVYGRLVQDFFDHPHLRLGVVHPDDYAQVSPFHQQLLAQGTYSLEYRIQRPDGEIRWL 624

Query: 277 YKIVRVL-----NSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRY 327
           Y   RV      +     GIA D++      D L  + E     L   +  I  ++    
Sbjct: 625 YDRGRVTYDQQGHPLRLDGIASDITDRKQAEDALRVSEERWHLALRGNSDGIWDWNVKTN 684

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSE 386
             F +  + E+   +   +   P++ +      S    P+ L W     ++ F    S  
Sbjct: 685 DVFFSPRWKEMLGYEEDEI---PNHLDEW----SKRVHPDDLEWVMGLIQDHFDHKTSYY 737

Query: 387 THKDTWHLPNGQTLHVIVTS----NPRGGTIWM---FENLTVQVDLETKYNTLVKVQGET 439
           + +      +G    ++       + +G  + M     +++ +   E             
Sbjct: 738 SSEHRLLCKDGSYKWILDRGQALWDDQGKVVRMVGSHTDISDRKAAEAALRDSEARFRAM 797

Query: 440 IDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLS-------PGTHIRNIAATCSRYY 491
            +       +   + G I  +N A    +    ++L            +  + A   R  
Sbjct: 798 FERSKAIKLLIDSETGAIADANWAAVKFYGYSRSQLITKTITDLNCLPLPQVQAEMKRAK 857

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            E   + +F   + S +     +  +   + D     SII            ++T+  +A
Sbjct: 858 LEERTYFVFPHRLASGEIREVEVYSSAIEIQDRTFLVSII-----------HDITERKQA 906

Query: 552 ERALTEKNEALRKADEIKNSFVQHVS 577
           ERAL +  E  R   E  +  +  V+
Sbjct: 907 ERALHDSEERFRAIFEQASVGIALVT 932


>gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis
           HTCC2601]
 gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp.
           HTCC2601]
          Length = 855

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 122/574 (21%), Positives = 246/574 (42%), Gaps = 30/574 (5%)

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
           +  ++    + +   E  +  + +++         +S   H        VR  N   ++ 
Sbjct: 7   LAEERRARLAAERLLELKQAELFAANRKLGKHARALSDEIHETRAEITEVRSENRLVKSQ 66

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           + +   K   V  QL   ++ L  +    A+++ +  L+  N +F+  +E D+  +    
Sbjct: 67  LGLAHEKIELVEGQL---WKALQTMRDGFAMYNSDALLELANPAFLAPFE-DIDSVGPGA 122

Query: 351 SNDELLEFLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           S   +LE L     +  Q   +  W   +   ++ S    +T  L  GQ + +     P 
Sbjct: 123 SYRHVLEMLVEEGIVDLQGERRRHWLSRMQERWEMSPIPPETIRLWTGQFIKIQDRRMPD 182

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GG + +  ++T  + +              I+ L +G  ++  + R+ + N  +R+L+  
Sbjct: 183 GGVVSLCVDITELMRM-----------WSAIEELPDGFVIYDAEDRLLMCNAPYRNLYSD 231

Query: 470 EENRLSPGTHIRNIAA--TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               + PG    +I         Y E+ G +            R   +   +L     L 
Sbjct: 232 SAPAIIPGASFEDILRYGLSQGQYAEALGREEDWLEERLSAHRRAEQEMEQQLRDGRWLR 291

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                L +   +   +++T++ R ++ L E      +A   K++F+ ++S+E+R+P+  +
Sbjct: 292 IYERALSDGGRVGLRIDITEAKRIQQELVEAKRRAEEASHAKSAFLANMSHEIRTPMNGV 351

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  +LL+ S   +L+ +Q+ YV+ I  S   LL ++NDILD + ++A  ++L      L
Sbjct: 352 VGMAELLRES---ALSDEQALYVDTIRNSGEALLVIINDILDYSKIEAERLQLKPEPFDL 408

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
              ++EV   +     E  + + V  D  L + FV D  R+ QIF+ ++ NA+ F+++G 
Sbjct: 409 ERTVHEVLLMLQPTAREKGLELLVDYDMFLPTRFVGDPGRVRQIFTNLVGNAVKFTNEGH 468

Query: 707 TVILKAAR--DNGDFIF--SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
            +I    R  + G+     +V++ G  IP D  + +F  F  V +    Q  G GLGL+I
Sbjct: 469 VLIRITGRCVEEGEAAVHATVEDTGIGIPPDKIEHIFGEFNQVEDDRNRQFEGTGLGLAI 528

Query: 761 VESFINLHGGHVSISSSDEGVTTINCR--IPSKE 792
            +   +L GG + + S     +    R  +P  E
Sbjct: 529 TKRLTDLMGGEIWVESEAGRGSCFGLRMVLPVDE 562



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 99/310 (31%), Gaps = 31/310 (10%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--- 209
           +    R  G  A      +    +E+ E   + + + + + +     + ++  +W     
Sbjct: 28  LFAANRKLGKHARALSDEIHETRAEITEVRSENRLVKSQLGLAHEKIELVEGQLWKALQT 87

Query: 210 --------DQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEE-----IKKRMISS 255
                   +    +  AN ++    E  + +    +     ++  EE       +R    
Sbjct: 88  MRDGFAMYNSDALLELANPAFLAPFEDIDSVGPGASYRHVLEMLVEEGIVDLQGERRRHW 147

Query: 256 SALEKNFCETVSTLEHGNNKSYKIV-----RVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
            +  +   E                     R +   G   + +D+++       L   + 
Sbjct: 148 LSRMQERWEMSPIPPETIRLWTGQFIKIQDRRMPDGGVVSLCVDITE-------LMRMWS 200

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            +  L     I+D    L   N  +  L+      +    S +++L +  S  +  E L 
Sbjct: 201 AIEELPDGFVIYDAEDRLLMCNAPYRNLYSDSAPAIIPGASFEDILRYGLSQGQYAEALG 260

Query: 371 W-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
             + W E   S ++ +E   +   L +G+ L +   +   GG + +  ++T    ++ + 
Sbjct: 261 REEDWLEERLSAHRRAEQEMEQ-QLRDGRWLRIYERALSDGGRVGLRIDITEAKRIQQEL 319

Query: 430 NTLVKVQGET 439
               +   E 
Sbjct: 320 VEAKRRAEEA 329


>gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1350

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 141/831 (16%), Positives = 287/831 (34%), Gaps = 73/831 (8%)

Query: 2    MAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
            +  +A +G+ +   +       + + G   G+L  T +  +LL R    L        + 
Sbjct: 286  LPLIAMVGLARDDALSPWRHQVLVLTGIALGVLGLTALTGLLLGRATARLRASEVLFRAL 345

Query: 62   LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL---SFENW 118
                              + L I   G D+   +           Q + D L     E  
Sbjct: 346  FD-------------ASTDGLLICRLGPDDRFRLEACNQAAAAALQAEPDGLVGRRPEEV 392

Query: 119  LKFHHYIKLSKATEKLRKEGQS--FDLVAETQNDC----AIKIEGRVSG---SCAFLRIL 169
            +      ++     +    G+   F+   +  +       + +  R         F    
Sbjct: 393  MPALQAARVEADLRRCLAVGEPIRFESSVDLDSGRRDREIVLVPLRNEKNRLDRVFASFR 452

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTET 228
             +  +    A T    + L     +            W  D +   + W+   Y +    
Sbjct: 453  DITHLRRAEAATRETNRMLLMAEEI--AHVGH-----WRLDVRENRLTWSQEIY-RIYGV 504

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET-----VSTLEHGNNKSY------ 277
            +    ++ +  +   +  E +  + ++ A                   G+ +        
Sbjct: 505  DPDSGEQTVDSAVAAYHPEDQPVVAAAVADAIAHRRPFTLNLRILRPDGSVRHVVARGLC 564

Query: 278  KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNR 333
            +           G   DV++   V  +   T       L ++   + +      ++  N 
Sbjct: 565  EEDETGEVAAIFGTLSDVTELRRVEREAAETASLLATTLESMDQGLVVVSPEGRVEICNA 624

Query: 334  SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS----ETHK 389
              + L ++    +A  P+  ++L+   +  +      +   +E+I  + +          
Sbjct: 625  RAIALLDLPPELMAGKPTAGQVLDHQWAKGE------FAGTEESIRHLLQLGSIVLAPQA 678

Query: 390  DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
             T   PNG  + V       G  +  + ++T +   E              +++S+ +  
Sbjct: 679  YTRTRPNGTVIEVRTMPMAGGSLVRTYTDITARRVAEEALRESETRYRLIAENVSDVITR 738

Query: 450  FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
               D      +PA R L   E   L     +  I         E+        + T+   
Sbjct: 739  LNLDLEWDYVSPACRELLGYEPEDLVGTKPLDGIHPDDRACSAETFACLTTGLVDTATSR 798

Query: 510  ER-KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +R +   G+   +   +          +  + +  +V++  +   AL +  +A  +A   
Sbjct: 799  QRCRRRDGSYVWVEARIRLLRGADGAPSGYVASLRDVSERQQQAEALEQARDAAEQASRA 858

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K  F+  +S+E+R+PL  I+G+TDLL      +L   Q +  E I ++   LL +VNDIL
Sbjct: 859  KTDFLALMSHEIRTPLNGILGYTDLLLEDA--TLGEGQRRQAERIQSAGAALLTIVNDIL 916

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
            D + ++AG ++L+    +L+ L++     +   + +  I I  + D  +  + V D+ RL
Sbjct: 917  DFSKIEAGQVELDPRPFLLDALVDNTISVVRGFVGKKAIAISTVVDPDVPRTLVGDQDRL 976

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRF 742
             Q+   +L+NA+ F+  GS V L  +            FSV + G  IPED    +F RF
Sbjct: 977  RQVLLNLLNNAVKFTHAGS-VTLSVSCLEPAGATAALRFSVTDTGIGIPEDKRGRLFQRF 1035

Query: 743  VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCRIP 789
                        G GLGL+I ++ + L GG + + S     TT      +P
Sbjct: 1036 SQLDSSIGRDFGGTGLGLAISKNLVELMGGTIDVESEVSKGTTFWFTVTLP 1086


>gi|46201797|ref|ZP_00208250.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 641

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 121/647 (18%), Positives = 235/647 (36%), Gaps = 59/647 (9%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE------TEGIVFQKAIGESRKL-- 243
           +++ + + D LD  +        ++  N  +    E      T  + F+  I  + +   
Sbjct: 1   MTMMQGVLDHLDQGISVFSADLRLVLWNRRFADLHEFPDGFLTHDLAFEDIIRFNAQRGE 60

Query: 244 ------FKEEIKKRMISSSALEKNFCETV-----------STLEHG-----------NNK 275
                  ++ ++ R+ S+     +  E             + L  G           N +
Sbjct: 61  YGGHYDVEDMVRHRVDSAREFRPHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQ 120

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFH 331
             + +R  N   +  +           ++     E L     ++   + +FD    L   
Sbjct: 121 IAENLRGSNDRLDQMVERRTRALQDSEERHRAYGEFLEATVQHMPQGVCLFDNALNLVVA 180

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N+ F +L +I  +F     +  E + +     +     + +        +    E H   
Sbjct: 181 NKIFFDLTQIPDSFNVKGINFYEFMLYNAQRGEYG-PGDPEELARQRQEIAARMEPHAFD 239

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
              P+G  + V     P  G I  F ++T +   E        +    ++     V +  
Sbjct: 240 RTRPDGTVIEVRGNPIPGRGFISTFTDITERAKAEEALREAATMARAMLEAPGLLVLLIR 299

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            DG I   N        + ++ +        +    +          +  A    F+DER
Sbjct: 300 MDGTIVDLNEEAAVGLGSHKDAMIGTNIFNAMPTKVAERRFALAQQAILEARAIYFEDER 359

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKAD 566
                          E ++ P P  Q      M+   +VT    AE+ L E     + A+
Sbjct: 360 ----------DGRWFETTMTPYPMDQDGIPRVMVIAHDVTHRHHAEQRLREATAMAQAAN 409

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F+  +S+ELR+PL  I+GF++++     G +  +   Y + I+A+   LL ++ND
Sbjct: 410 RTKTDFLAAMSHELRTPLNAILGFSEIISREMFGPVGERYRTYGQDINAAGQHLLAMIND 469

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ ++ G   L    +  ++L     + + ++    N+ +       L   + D +R
Sbjct: 470 ILDISRIEIGAFTLCIEPVDPHELAYSCLRLVGSRAEAGNVDLSEDMPESLPHLMIDSRR 529

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             QI   +L NA+ F+  G  V L+   RD+G   F V + G  + E       + F   
Sbjct: 530 TKQILINLLGNAVKFTPPGGKVTLRGETRDSGGIAFHVIDTGIGMSEADMAVALSPFGQV 589

Query: 746 AH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +  G GLGL + +S   LHGG + I+S     TT++   P+
Sbjct: 590 DTGLDRRFEGAGLGLPLAKSLAELHGGSLEITSIPGKGTTVSVYFPA 636



 Score = 39.5 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 60/199 (30%), Gaps = 19/199 (9%)

Query: 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
                 +  +     R E  +FD      +   I++ G       F+         +++ 
Sbjct: 218 DPEELARQRQEIAA-RMEPHAFD--RTRPDGTVIEVRGNPIPGRGFISTF------TDIT 268

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E     + L    ++ + + ++   LV      G I+  N   ++     G      IG 
Sbjct: 269 ERAKAEEALREAATMARAMLEAPGLLVLLIRMDGTIVDLN---EEAAVGLGSHKDAMIGT 325

Query: 240 S-RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG------IA 292
           +       ++ +R  + +         +   +  + + ++         + G      IA
Sbjct: 326 NIFNAMPTKVAERRFALAQQAILEARAIYFEDERDGRWFETTMTPYPMDQDGIPRVMVIA 385

Query: 293 IDVSKEITVNDQLTHTYEI 311
            DV+       +L     +
Sbjct: 386 HDVTHRHHAEQRLREATAM 404


>gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 599

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 108/522 (20%), Positives = 219/522 (41%), Gaps = 32/522 (6%)

Query: 293 IDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +D+++   +  +L        EI     + I I+D   +L   N S ++L+ I       
Sbjct: 85  LDITERKDMEKELKISEKRFREIYSESPIPIEIYDSEGHLANANTSCLKLFGIS------ 138

Query: 349 NPSNDELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHK-----DTWHLPNGQTLHV 402
                E+ +F L     LP     +         Y++    +     D +      ++HV
Sbjct: 139 --DVAEVKDFNLFDDPNLPADTRAQLLAGQTVE-YETVFDFELVKKLDLYKTNRSGSIHV 195

Query: 403 IVTSNPR-----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            V  +        G +   +++T +   E K     +     +     G+  +       
Sbjct: 196 NVKISALCTDCIDGYLVHVQDITKRKQAEEKVRQSEERLELALKGTRAGIWDWDVQTGKT 255

Query: 458 LSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
             +  +  +     + L P      ++         E      FA    +++ + +    
Sbjct: 256 YFDERWAEIVGYNPDELKPDIQTWIDLTHPKDYKRAEELLNKHFAGETENYECQLRMKHK 315

Query: 517 TLELL----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
               +       V+E+S    P   T  T +++TD   AE A+ +      +A+  K+ F
Sbjct: 316 NGHWVWIEDRGRVVEWSRDGKPKRMT-GTHIDITDRKMAENAIIQSKVLAEQANRTKSEF 374

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+ELR+PL +IIG++ +L  +  G+L+ K+ +Y   I  S   LL L+N ILD++ 
Sbjct: 375 LANMSHELRTPLNSIIGYSQILNQNPSGNLDEKELKYSHNILNSGEHLLELINSILDISK 434

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           V+AG M+     + L + ++++   +     + +I I+ I++  +     DR +  QI  
Sbjct: 435 VEAGKMEYEPERVNLPETIDDIIGLVKPLAMKKSIDIRFINNSAIAKVWVDRVKFKQILH 494

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQ 750
            +LSNA+ F+ +   V +  + D+G    SV + G  IP +  + +F+ F    ++   +
Sbjct: 495 NLLSNAIKFTPEKGEVKIYLSTDDGTAQISVADTGIGIPAEKIEDIFDPFKQVNSSSSRE 554

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL++V+ ++ +H G + + S     +T    +  KE
Sbjct: 555 YEGTGLGLALVKKYVEMHDGEIWVESEVGAGSTFTFTLSVKE 596


>gi|294494969|ref|YP_003541462.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292665968|gb|ADE35817.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 625

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 133/642 (20%), Positives = 257/642 (40%), Gaps = 63/642 (9%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L+     +   +F  +       + +      I + N S ++     G    +  G+   
Sbjct: 10  LEFNAPVSKSKIFADMIQHSTDAIIYTTPDFTINFVNRSAEEMF---GWTLPEIKGKPIT 66

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNK----SYKI--------VRVLNSFGEAG 290
           +  ++              +      +E    +    ++                +G  G
Sbjct: 67  ILHDQELTSQQKKEMFSNLYSGKAHEIEGSRKRKDGSTFYCQIKISPLFTEKSRIYGYMG 126

Query: 291 IAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           I  D+++E    D L    ++L  L     V + + D+   + + N    ++    L  +
Sbjct: 127 IIRDITEEKQNEDSLVKELDLLTGLIGTARVIVTVLDRQGKIVYCNPHTEKITGYKLKEI 186

Query: 347 ATNPSNDELL-----EFLRSANKLP----------EQLNWKTWKENIFSVYKSSETHKDT 391
             +      +     E +RS  K              ++ K  KE I   Y ++  + + 
Sbjct: 187 KGDDWFSRFIPVREKERIRSVFKKAICGHPTKGNVNPIDTKEGKEIIVEWYDTALKNDE- 245

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
                G+            G + +  ++T +V+ E K  T         +++  G+ + G
Sbjct: 246 -----GEVT----------GLLSIGNDITQRVEAEEKLKT-------IYENMPGGILMIG 283

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            D  IK  N     +   +   L     + +I         +   W+         D   
Sbjct: 284 QDYIIKDVNYRTCEITGYKREELVGQ--LCDIVCPKGSSSKQCPIWEDGQEEFRGMDTSI 341

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           K   G  + +  +  E +I    +   +  F +++    AE    E  +A  +A++ K+ 
Sbjct: 342 KCKNGIKKPILKNAQEITIK--GDTYILELFQDISQRKNAEENAIEAKKAAEQANQTKSE 399

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+ELR+PL ++IGF+D+L     G LN  Q +YV  I+ S + LL+L+NDILDL+
Sbjct: 400 FLANMSHELRTPLNSVIGFSDILSKEVRGKLNDSQKKYVSNITKSGSHLLSLINDILDLS 459

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG  +L YS+  L++ L+E+   I   + + NI +++    +     ADR++  QI 
Sbjct: 460 KIEAGQKQLEYSSFDLHEALDEISILIKPLISKKNIDLQMDLPPEDSRVYADRKKFKQIM 519

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
             +LSNA  F+    T+ + A ++      +V++ G  IPE    ++F  F    +A   
Sbjct: 520 YNLLSNASKFTPDKGTITIVANQEKDKLKVAVQDTGMGIPEADQATIFEPFQQVKSAKSS 579

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + +G GLGLS+    + +HGG V + S     +T    IP K
Sbjct: 580 EYKGTGLGLSLARELVEMHGGQVGLKSEVGMGSTFTFTIPDK 621



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 29/285 (10%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +D+ +      +     +++ + T AI     +  + F NRS  E++   L  +   P  
Sbjct: 7   VDILEFNAPVSKSKIFADMIQHSTDAIIYTTPDFTINFVNRSAEEMFGWTLPEIKGKP-- 64

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHLPNGQTLHVIVTSNPRG 410
              +  L       +Q      K+ +FS   S + H+        +G T +  +  +P  
Sbjct: 65  ---ITILHDQELTSQQ------KKEMFSNLYSGKAHEIEGSRKRKDGSTFYCQIKISPLF 115

Query: 411 -------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                  G + +  ++T +   E      + +    I      V V    G+I   NP  
Sbjct: 116 TEKSRIYGYMGIIRDITEEKQNEDSLVKELDLLTGLIGTARVIVTVLDRQGKIVYCNPHT 175

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             +   +   +              +    S    +F   I     +        +   +
Sbjct: 176 EKITGYKLKEIKGDDWFSRFIPVREKERIRS----VFKKAICGHPTKGNVNPIDTKEGKE 231

Query: 524 SVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALR 563
            ++E+    L N +  +T       ++T  V AE  L    E + 
Sbjct: 232 IIVEWYDTALKNDEGEVTGLLSIGNDITQRVEAEEKLKTIYENMP 276


>gi|323700304|ref|ZP_08112216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460236|gb|EGB16101.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1049

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 152/793 (19%), Positives = 294/793 (37%), Gaps = 88/793 (11%)

Query: 51  LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI--IGQLHQRIDIPQT 108
            A++        SE   +L    +L    +    VWD   +T E+    QL   +     
Sbjct: 141 SAREEAREAVEASEEQLKL----ALDAAKDA---VWDLDCDTSEVFVSPQLAALLGYGSD 193

Query: 109 DTDLLSFENWLKFHHYIKLSKATEKL-----RKEGQSFDLVAETQND--CAIKIEGRVS- 160
                  + WL   H        E L     R+     +L    ++     + + G+ + 
Sbjct: 194 AVPGTH-DGWLGLVHPSDRPGFEEALWGAVERRGAFDRELRILDRDGIWRWVLVRGKTAE 252

Query: 161 --GSCAFLRIL-----------SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
                A  R++           + + +        L    L  +++  + L +++  LVW
Sbjct: 253 SDDGKAPARMVGTIQDVHARKTAEEELRRAKMAADLANSALKVNMAHLRTLMETMPELVW 312

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET-- 265
            +D+ G  L+ N  +++     G    + +G +   F +           L         
Sbjct: 313 VKDEEGVFLFCNHRFERL---YGASEAEIVGRTDYDFVDADLADFFRGHDLRAMNSGRPC 369

Query: 266 -----VSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHT---YEI 311
                V+  + G+ +  + ++           G  G+A D+++   + D+L  +   +++
Sbjct: 370 INEEQVTYRDDGHVEYLETIKTPLFDDDGKLIGVLGVARDITERKRIADELKESELRFKV 429

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           LHN +           L   N+   ++       L+   + D L    R   +       
Sbjct: 430 LHNASFGGIFLHDQGVLLDCNQGLSDITGYTQEELSGMEALDLLAPSARDDVR------- 482

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM---FENLTVQVDLETK 428
           +  +      Y++    +D    P    L +   S P  G +     F ++T +   E +
Sbjct: 483 EKIRARFERPYETVGLRRDGTCYP----LQIAAKSIPYKGRVVRVVEFRDITERKRAEDE 538

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                +      ++   G+  F  DGRI   N  F  +  +    L     +R       
Sbjct: 539 LKDSERRHRVIFENSPLGMIRFSRDGRILDCNDRFVEMMGSSREALIGFPMLRASNPDMR 598

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVN 544
           R    +      A   ++++D   S  G  E      L     P+   Q     + T  +
Sbjct: 599 RALATA-----IAGSPSAYEDYYSSETGRRETF----LHVQFNPVNPGQSPTEVIATLED 649

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            ++  R + AL    E        K  F+ ++S+E+R+PL  I+G   LL ++    L+ 
Sbjct: 650 FSERKRDQDALRRAKEQAEAFSRSKTEFLTNMSHEIRTPLNGIMGMLQLLHST---GLSR 706

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q++Y      SS  L+NL+ DILDL+ V+AG + +      L +   +V         +
Sbjct: 707 EQAEYSGAALQSSRRLMNLLTDILDLSRVEAGKLVVRAVPFDLVETCRQVCDLFKLTSAQ 766

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----D 718
           + + +       +    + D  RL Q+ + +L NA  F++ GS V+      +G      
Sbjct: 767 SGVTLICELGENVPRRVIGDAIRLQQVLTNLLGNAFKFTATGSIVMAAHRLPDGPSKGYR 826

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +FSV + G  IP++   ++F+ F   +     + +G GLGLSI  + + L GG +SI S
Sbjct: 827 ILFSVADTGEGIPDEKVDTLFDAFTQVSEGYTRRHQGAGLGLSICRNLVRLMGGTMSIES 886

Query: 777 SDEGVTTINCRIP 789
            +   TT+   +P
Sbjct: 887 EEGAGTTLYVALP 899



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 70/512 (13%), Positives = 149/512 (29%), Gaps = 85/512 (16%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
               +   +        +L++    ++ + + +  +V   D  G +++AN   +   +  
Sbjct: 2   EFTNLDQCIRRIEELEHRLADSERRWRGVLEYMPHIVLSLDSEGRVVFAN---RHLLDMT 58

Query: 230 GIVFQKAIGES-RKLFKEEIKKRMISSSALEKNFCETV---------STLEHGNNK---S 276
           G  F++  G+S  +LF  E  +  I    L       V              G  +    
Sbjct: 59  GWTFEEIRGKSWFELFLPEDVREGIREVFLATMARRDVGPHSCHTNEIVTRDGRRRNVSW 118

Query: 277 YKIVRVLNSFGEA---GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQ 329
           + ++      G A    + ID+S      + +  + E     L     A+   D +    
Sbjct: 119 FNVLISAPEGGVANVTSLGIDLSAREEAREAVEASEEQLKLALDAAKDAVWDLDCDTSEV 178

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK------LPEQLNWKTWKENIFSVYK 383
           F +     L       +    ++D  L  +  +++      L   +  +   +    +  
Sbjct: 179 FVSPQLAALLGYGSDAVPG--THDGWLGLVHPSDRPGFEEALWGAVERRGAFDRELRILD 236

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL----------- 432
                +  W L  G+T        P    +   +++  +   E +               
Sbjct: 237 RDGIWR--WVLVRGKTAESDDGKAP-ARMVGTIQDVHARKTAEEELRRAKMAADLANSAL 293

Query: 433 ---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              +      ++ + E V V   +G     N  F  L+   E  +   T    + A  + 
Sbjct: 294 KVNMAHLRTLMETMPELVWVKDEEGVFLFCNHRFERLYGASEAEIVGRTDYDFVDADLAD 353

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSD----SVLEYSIIPLPNAQTMLTFVNV 545
           ++   D        + + +  R  +        D      LE    PL +    L  V  
Sbjct: 354 FFRGHD--------LRAMNSGRPCINEEQVTYRDDGHVEYLETIKTPLFDDDGKLIGVLG 405

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVS------Y------ELRSPLTNIIGFTD- 592
                 ER    +     K  E++   + + S      +      +    L++I G+T  
Sbjct: 406 VARDITERK---RIADELKESELRFKVLHNASFGGIFLHDQGVLLDCNQGLSDITGYTQE 462

Query: 593 ---------LLKTSKLGSLNSKQSQYVEYISA 615
                    LL  S    +  K     E    
Sbjct: 463 ELSGMEALDLLAPSARDDVREKIRARFERPYE 494


>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1248

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 125/677 (18%), Positives = 258/677 (38%), Gaps = 44/677 (6%)

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
           LR++G   ++  E      +++ GR      +           +L E       L     
Sbjct: 167 LRRKG-GDEMTVE-ITLTVVELMGRTVQLAVW----------HDLTERKEAEAALRESEE 214

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK---- 249
            F+   +    L + +D+ G +L+ N   +   + +                +  +    
Sbjct: 215 RFQAFMNHSPVLAFIKDENGRMLYINEVMEHRFQMKLEDIFGKTDFDWLPHDKATRLTAV 274

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKS----YKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
            R + +S L +   E V T +   ++     + +     +    G+AIDV ++      L
Sbjct: 275 DREVLASGLPQQLIEEVPTPDGVMHEWLVMKFSMGTSDGAKMLGGVAIDVGEQRRAERAL 334

Query: 306 T----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFLR 360
                H  E+  +  VA    D    +   N + + +    L  +   P +   + E+  
Sbjct: 335 QQSERHFRELFDDAPVAYHELDLENRITRVNATELNMLGYRLEEMVGRPVTEFLIGEYTG 394

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-GTIWMFENL 419
           +  + P   +       +   ++ S   KD   +P      V+  +  +  GT    +++
Sbjct: 395 TTVQQPAVGD------PLHEAFERSFRRKDGRRVPVLMRQRVMTDAAGKICGTRATLQDI 448

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT--EENRLSPG 477
           +     E +     +      ++  EG+    P+G     NPA   +      +   S  
Sbjct: 449 SALKRKELELRDAEEKYRSIFENAIEGIFQTTPEGSYMSVNPALAEICGYESPDELTSKI 508

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           THI            E     L    +  F+ +      ++  +S+              
Sbjct: 509 THIAKQLYVRPGRRAEFTAMMLEKGAVKDFESQIYRRDRSIIWISERARAVRDQDGKLLY 568

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
              T  ++T     + A+ +  +A  ++  +K+ F+ ++S+E+R+P+  IIG T LL  +
Sbjct: 569 YEGTVEDITARRETDDAIKKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDT 628

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+ KQ  + + IS+S+  LL ++NDILD + ++AG++        L  ++    + 
Sbjct: 629 E---LSPKQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVEL 685

Query: 658 IATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +A +     I +  ++      +   D  RL Q+ + ++ NA+ F+ KG  V+    ++N
Sbjct: 686 LAARAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDKGEVVVRANCQEN 745

Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            +      FSV + G  I  +  + +F  FV       RR  G GLGL+I +  +   GG
Sbjct: 746 AETHTTIRFSVTDTGIGISSEAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGG 805

Query: 771 HVSISSSDEGVTTINCR 787
            + ++S     +T    
Sbjct: 806 EIGVTSEAGKGSTFWFT 822



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 108/332 (32%), Gaps = 25/332 (7%)

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------AGIAIDVSKEIT 300
           E +K +  +   +           +G  K + +V    +           ++ DV+    
Sbjct: 23  EARKALTLARESQTGQFLGSCIAANGERKHWDVVLTTINDAAGKPEKLLAVSRDVTDRRA 82

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
             ++      I    + A  +F ++  +   N + V +   +            L     
Sbjct: 83  AEEKFRI---IFEQSSDAHLLFSKDSIID-CNVAAVRMLGFESKEALLTVPMSSL----- 133

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----NGQTLHVIVTSNPRGGT---I 413
           S    P+          I  V +    H   W+L     +  T+ + +T     G    +
Sbjct: 134 SPESQPDGAKSMERAAEIRRVLREKGRHTCEWNLRRKGGDEMTVEITLTVVELMGRTVQL 193

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            ++ +LT + + E       +     ++H      +   +GR+   N      ++ +   
Sbjct: 194 AVWHDLTERKEAEAALRESEERFQAFMNHSPVLAFIKDENGRMLYINEVMEHRFQMKLED 253

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +   T    +    +      D   L + +     +E  +  G +      V+++S+   
Sbjct: 254 IFGKTDFDWLPHDKATRLTAVDREVLASGLPQQLIEEVPTPDGVMH--EWLVMKFSMGTS 311

Query: 534 PNAQTM-LTFVNVTDSVRAERALTEKNEALRK 564
             A+ +    ++V +  RAERAL +     R+
Sbjct: 312 DGAKMLGGVAIDVGEQRRAERALQQSERHFRE 343


>gi|171060213|ref|YP_001792562.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777658|gb|ACB35797.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1603

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 138/789 (17%), Positives = 282/789 (35%), Gaps = 60/789 (7%)

Query: 38   IIPIILL-IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
            +I  I L I  R     ++      L+ I                      G+    E  
Sbjct: 313  VIAGIHLDISARKHAELELTRGQQRLANILAGTDVGTWEWNVE-------TGETIFNERW 365

Query: 97   GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE------GQSFDLVAETQND 150
              +          T +     W    H   L ++   L             ++    ++ 
Sbjct: 366  AGIAGYTLDELAPTHI---GTWSALTHPDDLRRSAVLLEHHFNGALPAYECEVRMRHRDG 422

Query: 151  CAIKI--EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
              + +   G++SG     R L + G + +++E       L     +            W 
Sbjct: 423  HWVWVLDRGKLSGRSESGRPLWMAGTHMDISERKHAEAALRASQDLLDRTGRIGGVGGWS 482

Query: 209  RD-QAGDILWANISYK-KNTETEGIVFQKAI-----GESRKLFKEEIKKRMISSSALEKN 261
             D    +ILW + + +    E         +      ESR L ++ +++ + +    +  
Sbjct: 483  YDLGTQEILWTDQTCRIHGVEPGHRPTLTEVMSYFDPESRPLLEQAVQRSIATGEGYDME 542

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-----DVSKEITVNDQLTHTYEIL---- 312
                  T   G +   + V      G+  + +     +V+    +  +L    E+L    
Sbjct: 543  LPF---TTAGGQHIWVRAVGETEFVGDQAVRMLGTLQEVTARRELESELRRNNEVLASVL 599

Query: 313  HNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNW 371
             NL   +++FD +  L   N  F  L ++ D  F       ++++       +       
Sbjct: 600  ENLPCGLSVFDADGLLVAANAQFRSLLDLPDRLFEGPVTRFEDIIRHNAEHGEYGPDDIE 659

Query: 372  KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
               +  +         H+     P+G +L +     P GG +  + +++ +   E +   
Sbjct: 660  AKIRTIVDRARSPVVQHQFERVRPDGTSLEIRGGPLPAGGFVTTYTDISARRKAEAEVQR 719

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
              ++    ID + E   ++ PD R+   N  +R ++    + + PGT    I    +   
Sbjct: 720  SAQLLRGAIDTIDEAFVLYDPDDRLVFCNDKYRRIYAASADLIVPGTTFEEIVRKGAERG 779

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
               D        +       ++    L   L     L      +P+  T+   +++T+  
Sbjct: 780  QYVDAIGRVDDWVAERMAAHRAGNAPLVQALDDGRTLRIVERRMPDGHTVGFRIDITE-- 837

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                      EA   A   K+ F+ ++S+E+R+P+  I+G   LL  ++L     +Q+ Y
Sbjct: 838  -----FQRAREAAEAASRAKSEFLANMSHEIRTPMNAILGMLALLHKTELA---PRQADY 889

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            V     ++  LL L+NDILD +  +A  M L      ++ LL ++   ++  +    + +
Sbjct: 890  VAKTEGAARSLLRLLNDILDFSKAEAERMVLEARPFRIDQLLRDLSVILSANIGGKEVEV 949

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVK 724
                D  L  + V D  RL Q+   +  NA+ F+++G  V+  A R+          +V+
Sbjct: 950  LFDIDPTLPRALVGDAMRLQQVLINLGGNAIKFTAEGEVVVSVAVRERSALGVTLQIAVR 1009

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I  +    +F+ F        RR  G GLG++I +  + L GG + ++S     +
Sbjct: 1010 DTGIGIAAENQARIFSAFTQAEASTTRRFGGTGLGVAISQRLVALMGGELQVASEPGRGS 1069

Query: 783  TINC--RIP 789
              +    +P
Sbjct: 1070 RFHFCITLP 1078



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 88/576 (15%), Positives = 188/576 (32%), Gaps = 61/576 (10%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           + ++  F  IA  +  + + +  +  QR  LA  ++ T +   E     S+         
Sbjct: 176 AGQVIGFVEIATDISASKLAVQEIADQRRRLAAIIDGTQAGTWEHDLAKSENR------- 228

Query: 81  CLTIVWDGKDETPEIIG-QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ 139
                        +++G  L +   + +  +    F + +      ++ +A E     G+
Sbjct: 229 -------VNAAYAQMLGYTLPEYTALLRAHS----FPSLVHPDDLARVEQARES-HLTGR 276

Query: 140 S------FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
           S      F +  +  +   I+  GRV+G  A  R L + GI+ +++       +L+    
Sbjct: 277 SSEYEAEFRMRHKAGHWVWIQSRGRVTGHDAHGRPLVIAGIHLDISARKHAELELTRGQQ 336

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYK-------KNTETEGIVFQKAIGESRKLFKE 246
               +    D   W  +        N  +               I    A+     L + 
Sbjct: 337 RLANILAGTDVGTWEWNVETGETIFNERWAGIAGYTLDELAPTHIGTWSALTHPDDLRRS 396

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV---------LNSFGEAGIAIDVSK 297
            +      + AL     E    + H +     ++                 AG  +D+S+
Sbjct: 397 AVLLEHHFNGAL--PAYECEVRMRHRDGHWVWVLDRGKLSGRSESGRPLWMAGTHMDISE 454

Query: 298 EITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
                  L  + ++L        V    +D              +  ++       P+  
Sbjct: 455 RKHAEAALRASQDLLDRTGRIGGVGGWSYDLGTQEILWTDQTCRIHGVEPGH---RPTLT 511

Query: 354 ELLEFLR-SANKLPEQLNWKTWKENI---FSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           E++ +    +  L EQ   ++          +  ++   +  W    G+T  V    +  
Sbjct: 512 EVMSYFDPESRPLLEQAVQRSIATGEGYDMELPFTTAGGQHIWVRAVGETEFV---GDQA 568

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              +   + +T + +LE++     +V    +++L  G++VF  DG +  +N  FRSL   
Sbjct: 569 VRMLGTLQEVTARRELESELRRNNEVLASVLENLPCGLSVFDADGLLVAANAQFRSLLDL 628

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVL 526
            +                +  + E    D+ A I T  D  R  +   Q        + L
Sbjct: 629 PDRLFEGPVTRFEDIIRHNAEHGEYGPDDIEAKIRTIVDRARSPVVQHQFERVRPDGTSL 688

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           E    PLP    + T+ +++   +AE  +    + L
Sbjct: 689 EIRGGPLPAGGFVTTYTDISARRKAEAEVQRSAQLL 724



 Score = 54.9 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/434 (11%), Positives = 120/434 (27%), Gaps = 32/434 (7%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
             A L  + L        +   + ++      +  ++       V   D+A  I W N +
Sbjct: 47  GNAVL-AVWLWRRVRRCRQVESQMQQWLAEHGLLALVARRTSNAVIITDRALRITWVNDA 105

Query: 222 YKKNTETEGIVFQKAIGESRKLF-------KEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           +   T+  G   ++A+G +              I   + S++A      E ++    G++
Sbjct: 106 F---TQVYGYSPEQALGATPGRLLGHPDSSPAAIDTLLRSAAAGVGCRVEILNRAADGHD 162

Query: 275 KSYKIV------RVLNSFGEAGIAIDVSKEI----TVNDQLTHTYEILHNLTVAIAIFDQ 324
                             G   IA D+S        + DQ      I+          D 
Sbjct: 163 VWVDTEVQPVHDDAGQVIGFVEIATDISASKLAVQEIADQRRRLAAIIDGTQAGTWEHDL 222

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
            +     N ++ ++    L               +   +    +   ++      S Y++
Sbjct: 223 AKSENRVNAAYAQMLGYTLPEYTALLRAHSFPSLVHPDDLARVEQARESHLTGRSSEYEA 282

Query: 385 SETHKD-----TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               +       W    G+         P      +  +++ +   E +     +     
Sbjct: 283 EFRMRHKAGHWVWIQSRGRVTGHDAHGRPLV-IAGIHLDISARKHAELELTRGQQRLANI 341

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGW 497
           +     G   +  +    + N  +  +     + L  +       +        +     
Sbjct: 342 LAGTDVGTWEWNVETGETIFNERWAGIAGYTLDELAPTHIGTWSALTHPDDLRRSAVLLE 401

Query: 498 DLFAAIITSFDDERKSLQG---TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             F   + +++ E +        + +L    L              T +++++   AE A
Sbjct: 402 HHFNGALPAYECEVRMRHRDGHWVWVLDRGKLSGRSESGRPLWMAGTHMDISERKHAEAA 461

Query: 555 LTEKNEALRKADEI 568
           L    + L +   I
Sbjct: 462 LRASQDLLDRTGRI 475


>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1274

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 146/656 (22%), Positives = 271/656 (41%), Gaps = 69/656 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTE 227
           G  S L E     + L+N  +  + +F+S++  V+  D    I   N +          E
Sbjct: 146 GPESRLTEMQAVNRALTNEKNKLRTIFESMNECVFVVDSNMRITEINAAAAAYFGVAPEE 205

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
             G+     +G +  L K  +   M S S  +    E V   + G  +       L+   
Sbjct: 206 VLGMHCASLLGCNCDLGKCHLYHAMKSGSCYKDI--EIVINTKQGPRRILTSGSFLHDIS 263

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
               G   + +DV++   +   L    +  ++ +  + IF++N  L + N++ ++L+   
Sbjct: 264 GKYAGGVQVFVDVTERYNMEQALRLHKQANNSSSECVTIFNENAQLIYANQAAIKLFNRS 323

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           +A L                  L  +  +    + +F++ K      +   + +   ++V
Sbjct: 324 MAELMG----------------LGIEEVYPGGDKILFNLIKGDFWQGELTPVKDNPNIYV 367

Query: 403 IVTSNP----RGGTIWMF---ENLTVQVDLETKYNTLVK-------VQGETIDHLSEGVA 448
            V +NP    +G  I  +    ++T     + +     +            +  L+  +A
Sbjct: 368 HVHANPIRENKGKIIGFYVAARDITEHKMAQLRLREARQEIEREAAKLRAIVSILNASIA 427

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF- 507
           +   + RI   N     +       L  G  I ++        ++ +  D    I+ ++ 
Sbjct: 428 LADANDRIIEVNEKCLKITGKSRQEL-IGRSIWDL--------HQGETLDRVRQIVDTYK 478

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALR 563
            D           L +S +  SI P+         +L  V+VT+   A+R   E  EA  
Sbjct: 479 QDPNHPPINITRRLEESDVIMSIQPVYRDKIYDGILLMVVDVTEVAAAKRQAEEAREAAE 538

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A++ K+ F+ ++S+E+R+P+  I+GF ++L  +   +LNS+Q + V  I      LL+L
Sbjct: 539 RANQAKSEFLANMSHEIRTPMNGILGFAEILLQT---NLNSQQEESVRIIQQCGENLLDL 595

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILDL+ +++G M L  +T  L  L+ E    I  K+ E  + IK+     L   F  
Sbjct: 596 INDILDLSKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYFKG 655

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG------DFIFSVKNNGSSIPEDMC 735
           D  R+ Q+ + +LSNA  F+ +G   V +   +D+         +FSV + G  IP +  
Sbjct: 656 DPTRIRQVLNNLLSNAAKFTHEGHVEVKVNGQKDHSVETDSFTLVFSVSDTGIGIPREKL 715

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F  F        R   G GLGL+I  S INL GG +++ S     +  +  IP
Sbjct: 716 DLIFESFTQADGSTTRKYGGTGLGLTISRSLINLMGGQITVESEVNRGSKFSFSIP 771


>gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
 gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
          Length = 1188

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 129/728 (17%), Positives = 265/728 (36%), Gaps = 75/728 (10%)

Query: 120 KFHHYIKLSKATEKLRKEG--QSFDLVAETQNDCAIKI-------EGRVSGSCAFLR-IL 169
                 +++ A  +  + G   +F+      +    K+        GR   + A +  + 
Sbjct: 180 HPDDRERVAAAVNQAIRFGVDIAFEAKIIWPDGTVRKVACRGTTERGRDGKATAVVGVLQ 239

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            L    +       + + L    ++ +   + + + +   D+    + AN  Y +     
Sbjct: 240 DLTDQIAARETLAERNRAL----AILRETVEIVPYSISVYDEHDRFVLANRKYFELYPYL 295

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKN--------FCETVSTLEHGNNK-----S 276
               +        + +  ++ ++I      ++          +    L     +      
Sbjct: 296 ENETKLIGKTFEDVLRISLQNKVIMDRTALEDPENYVAARMADRRGGLPMAERRLANGHW 355

Query: 277 YKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
           Y I     + G      ID++++     +L  T E     L  +  A+  FD +  L   
Sbjct: 356 YLIRENRTTSGHTISTRIDITEQKQAQLELGRTMEVLQATLDTMPNALIAFDADNRLMAW 415

Query: 332 NRSFVELWEIDLA-FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           N +FV L  ++   F    P      + L    KLP     +T    +F           
Sbjct: 416 NSAFVSLVGVEPERFERGRPLRGLTKDVLA---KLPST---ETGIRPMFLHIARRSPADF 469

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            W   +G+   V+    P GG + +F N+T +   + +           ++ +SEG A+F
Sbjct: 470 EWRRNDGEIYAVLGRPMPNGGYVTLFRNVTTERRAQVRAAQFEHRLSNALELMSEGFALF 529

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             +  + L N  +R ++      + PG    +I    +               +    + 
Sbjct: 530 DANDILILCNETYRRMYGKSTAYIRPGRRFVDIVRDAAATGQFPAAVGREEEWVAERLEL 589

Query: 511 RK--SLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            +    Q TL+ L+D  VL  +     +  ++    ++T+ VR E  L    + L +  +
Sbjct: 590 HRNPPDQPTLQALADGRVLLVAENRTSDGGSVGIRSDITERVRTENDLRAARDELEEQAQ 649

Query: 568 ---------------------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                                 K+ F+  +S+ELR+P+T ++G  +L   ++   L+ +Q
Sbjct: 650 SLRDLAEQIDAARLRAEEAGAAKSRFLAVMSHELRTPMTGLLGMIELASRTE---LSKEQ 706

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV  +  S+  LL L+NDILD + ++AG ++L   T     ++ +V      +     
Sbjct: 707 QGYVRIMRDSAETLLALLNDILDFSKLEAGKVQLEEITFAPEQIIGDVFGLFQAQASAKG 766

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFI 720
           + ++      + ++V  D  R+ QI S ++SNA+ F++KG  + ++     G        
Sbjct: 767 LVLEADLRPSVPAWVRGDPLRVKQILSNLISNAIKFTTKG-RITVRLGATEGPSGLVRLQ 825

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  I   + + +F  F        R   G GLGL+I        GG +++ S  
Sbjct: 826 GEVIDTGQGIAAGVLEHLFQAFEQGDSSTTRQFGGTGLGLAISRRLAEGMGGSITVESEL 885

Query: 779 EGVTTINC 786
              +    
Sbjct: 886 GRGSVFRF 893


>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1369

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 155/796 (19%), Positives = 295/796 (37%), Gaps = 89/796 (11%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
            + A  + E     +E   +  +Y S+L          DG  ET ++ G L       Q 
Sbjct: 102 RAGAGNIVEFSRDTAE-RQKAEEYRSVLEAIE------DGYFET-DLAGNL---TFANQA 150

Query: 109 DTDLLSF--ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN---DCAIKIEGR----- 158
              +L +     L  +    + +  E  RK  ++F  V  T         ++  R     
Sbjct: 151 LGRILGYPASRLLGKNSRQYMDR--ENARKVHEAFKEVYATGRAARGLVWEMIPRTGSPR 208

Query: 159 -VSGSCAFLRILS-----LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
            V GS + +R  S       GI  ++ E     ++L +  +  + LF ++D +V   D+ 
Sbjct: 209 CVEGSVSLIRDGSGRPCGFRGILRDITERLRMEERLRSSEAELRALFAAIDDIVLKLDRE 268

Query: 213 GD---ILWANIS--YKKNTETEGIVFQKA--IGESRKLFKEEIKKRMISSSALEKNFCET 265
           G    I  +N S  Y+   E  G   ++   + E   L        +       +     
Sbjct: 269 GRCLDIAPSNPSPLYRPGREMVGRNVREIFPVDEKEPLLDS-----VRRVLQTGRPAAME 323

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAG-IAIDVSKEITVNDQLTHTYEILHNLTVAI--AIF 322
            S         + +       G A  +A DV++E     +L    E    L   I   ++
Sbjct: 324 CSMQLGYRRLYFDVSISPEGEGAAVLVARDVTRERLAEQELRRAEERYRRLIEQIPGIVY 383

Query: 323 DQNRYL---QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
            ++       + +    E+          +P+  +         K+    + +  +    
Sbjct: 384 TEDARTGETLYDSPRVEEILGYPADTYRKDPNYWQ---------KIIHPEDRELLRALEE 434

Query: 380 SVYKSSETHKDTWHLP-NGQTLHVIVTSNPRGG-----TIW--MFENLTVQVDLETKYNT 431
              +  +   +      +G+ + V        G      +W  +  ++T +   E   + 
Sbjct: 435 RASREGKLSAEYRVFAADGRVVWVREEGALIPGEEGRPDVWQGIILDITERKRAEQALHE 494

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +      D    G+A+ G DGR   +N A   +      RL   T  ++I        
Sbjct: 495 SEQRFRRAFDDAPIGMALVGLDGRWLQANRALCEIVGYPRERLLQKT-FQDITHPEDLDA 553

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDS 548
           +      L A  I  +  E++ +  +  ++   +L  S++   N + +       ++T+ 
Sbjct: 554 DLELLRRLVAREIPGYQMEKRYIHASGRIV-WVLLSVSLVTGENDEPLYVIAQVQDITER 612

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E  L E  E    A   K+ FV ++S+E+R+P+  +IG  +LL  +    L  +Q +
Sbjct: 613 KRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDT---PLTPEQRE 669

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I +S   LL ++NDILD + ++AG + L      ++  + EV   +A + H   + 
Sbjct: 670 YARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLE 729

Query: 669 IK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------- 717
           +   I  G       D  RL Q+ + ++ NA+ F+ +G  V+  +               
Sbjct: 730 LICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSASLSKEEKKKSAPAGER 789

Query: 718 ----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
               +  F VK++G  I E+  K +F  F        RR  G GLGL+I    + + GG 
Sbjct: 790 GGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGE 849

Query: 772 VSISSSDEGVTTINCR 787
           + + SS +  +T +  
Sbjct: 850 IGLKSSPKEGSTFHFS 865



 Score = 77.7 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 127/385 (32%), Gaps = 32/385 (8%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFK-------EE 247
           K L +     V  RD+ G I + N S ++     G    +A+G + R+L K       EE
Sbjct: 13  KRLLEFSHDAVLARDEDGRISFWNRSAERL---YGWSSSEALGRNARELLKTRSGEPLEE 69

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           I++R+ S  A E    +       G     +   V    G     ++ S++     +   
Sbjct: 70  IEERVRSEGAWEGELRQHAR---DGRPLVVECRWVRAGAGNI---VEFSRDTAERQKAEE 123

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +L  +       D    L F N++   +     + L    S  + ++   +A K+ E
Sbjct: 124 YRSVLEAIEDGYFETDLAGNLTFANQALGRILGYPASRLLGKNSR-QYMDR-ENARKVHE 181

Query: 368 QLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
                + T +     V++          +    +L    +  P G    +  ++T ++ +
Sbjct: 182 AFKEVYATGRAARGLVWEMIPRTGSPRCVEGSVSLIRDGSGRPCGFR-GILRDITERLRM 240

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +  +           + + V     +GR     P+                    +  
Sbjct: 241 EERLRSSEAELRALFAAIDDIVLKLDREGRCLDIAPS--------NPSPLYRPGREMVGR 292

Query: 486 TCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDS-VLEYSIIPLPNAQTMLTFV 543
                +   +   L  ++       R  +++ +++L       + SI P      +L   
Sbjct: 293 NVREIFPVDEKEPLLDSVRRVLQTGRPAAMECSMQLGYRRLYFDVSISPEGEGAAVLVAR 352

Query: 544 NVTDSVRAERALTEKNEALRKADEI 568
           +VT    AE+ L    E  R+  E 
Sbjct: 353 DVTRERLAEQELRRAEERYRRLIEQ 377



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 78/274 (28%), Gaps = 29/274 (10%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +L     A+   D++  + F NRS   L+    +      + + L        + 
Sbjct: 10  AREKRLLEFSHDAVLARDEDGRISFWNRSAERLYGWSSSEALGRNARELLKTRSGEPLEE 69

Query: 366 PEQLNWK--TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-SNPRGGTIWMFENLTVQ 422
            E+       W+  +              H  +G+ L V         G I  F   T +
Sbjct: 70  IEERVRSEGAWEGELRQ------------HARDGRPLVVECRWVRAGAGNIVEFSRDTAE 117

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                +Y          ++ + +G       G +  +N A   +     +RL      + 
Sbjct: 118 RQKAEEYR-------SVLEAIEDGYFETDLAGNLTFANQALGRILGYPASRLLGKNSRQY 170

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +    +R  +E+     F  +  +    R    +      S   +E S+  + +      
Sbjct: 171 MDRENARKVHEA-----FKEVYATGRAARGLVWEMIPRTGSPRCVEGSVSLIRDGSGRPC 225

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                     ER L  +        E++  F   
Sbjct: 226 GFRGILRDITER-LRMEERLRSSEAELRALFAAI 258


>gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1177

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 125/668 (18%), Positives = 253/668 (37%), Gaps = 54/668 (8%)

Query: 156  EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
            EGR+              +  E         +    +       +     V   D  G+I
Sbjct: 368  EGRIPPRQIRYGASEFRTLTLEFRTLAHSIIEREKRLRTLSTGLEQAPISVLISDTQGNI 427

Query: 216  LWANISYKKNTETEGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFC-ETVSTL 269
             + N  +++ T   G    + +G++  L        E+ + +  + +    +  E ++  
Sbjct: 428  EYVNPYFEQLT---GYYSHEVLGKNPNLLKSDLNPPELFRDLWRTISAGAPWRGEFINRK 484

Query: 270  EHGNNKS--YKIVRVLNSFGEAGIAIDVSKEITVNDQ----LTHTYEILHNL----TVAI 319
            ++G        I  VL++ G+    I +S+EIT   Q    L  + E    L     V I
Sbjct: 485  KNGALHWQMAHIAPVLDNDGQITHFIALSEEITARKQADAALNESNERFRTLAQVSPVGI 544

Query: 320  AIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
               D +    + N ++  +        L++              +   +    + W+E +
Sbjct: 545  FQTDHDGEYIYVNTTWESITGTTSPQALSSQWDIH--------LHPDDQPRVQQRWQETV 596

Query: 379  FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNT 431
               + ++   +  +   +G    VI ++ P+        G +    ++T +  +E +   
Sbjct: 597  L--HGNAFHEEYRFLRGDGTIRWVIGSAAPQRDPDRVIQGFVGTLTDITERKQMELELGK 654

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
               +    ID + + +     DG     N AF    K  E  L   T     +   ++  
Sbjct: 655  ERALLRSLIDSIPDLIFYKRADGTYMGCNRAFELFCKRPEAALIGHTDQALFSPELAQLL 714

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVT 546
               D  +L     + F  E   L G    +          P+   Q      +    ++T
Sbjct: 715  KSGD--ELVINKNSCFSHEATGLFGDGHQV---PFLIQKSPMHGYQGELLGLIGVARDIT 769

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              +R E+ L +  E    A+  K+ F+  +S+E+R+P+  +IG  ++L  +    LN++Q
Sbjct: 770  QRLRVEQELQQAKEDAEAANRSKSEFLAAMSHEIRTPMNVVIGMGEILLET---PLNAEQ 826

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++Y+  +  +   LL L+++ILDL+ ++AG M L      L+ ++  +      +   +N
Sbjct: 827  TRYINSMQHAGDALLELIDNILDLSKIEAGRMTLEERAFRLDTMVISITDFFRLQALNHN 886

Query: 667  IRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + + V    +L     + D  R+ Q+   +L NA+ F+ +G   +  +   N      V 
Sbjct: 887  LSLVVEIAPELEQQYVLGDAGRVRQVLYNLLGNALKFTEEGGVSLHLSLDANQHIHTRVS 946

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I     + +F+ F        RR  G GLGL+I   F  L GG + + S +   +
Sbjct: 947  DTGIGIAPQQLERIFDNFTQEDSSVTRRFGGTGLGLAICRRFTELMGGRIWVESIEGQGS 1006

Query: 783  TINCRIPS 790
            T +  +P 
Sbjct: 1007 TFHMTLPL 1014



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 93/280 (33%), Gaps = 26/280 (9%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
           +L++++       + + +   ++ +L   +       D   E   +              
Sbjct: 511 ALSEEITARKQADAALNESNERFRTLAQVSPVGIFQTDHDGEYIYVNTTWESITGTTSPQ 570

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGR---VSGSCAFL 166
                ++  L      ++ +  ++    G +F           ++ +G    V GS A  
Sbjct: 571 ALSSQWDIHLHPDDQPRVQQRWQETVLHGNAFHEEY-----RFLRGDGTIRWVIGSAAPQ 625

Query: 167 R-----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           R     I    G  +++ E      +L    ++ + L DS+  L++++   G  +  N +
Sbjct: 626 RDPDRVIQGFVGTLTDITERKQMELELGKERALLRSLIDSIPDLIFYKRADGTYMGCNRA 685

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN-----FCETVSTLEHGNNKS 276
           ++   +             + LF  E+ + + S   L  N       E       G+   
Sbjct: 686 FELFCKRPEAAL--IGHTDQALFSPELAQLLKSGDELVINKNSCFSHEATGLFGDGHQVP 743

Query: 277 YKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYE 310
           + I +           G  G+A D+++ + V  +L    E
Sbjct: 744 FLIQKSPMHGYQGELLGLIGVARDITQRLRVEQELQQAKE 783


>gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 849

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 147/622 (23%), Positives = 261/622 (41%), Gaps = 43/622 (6%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE-----EIK 249
           FK L +S +  +   D  G ++ AN       E  G    K +G+  K  +      E  
Sbjct: 212 FKTLIESSNDSILIHDMKGRVMEANHV---ACEIFGYTRSKILGKHIKDLQTGIHLIEFG 268

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFGEAGIAIDVSK----EITV 301
           +++           ET S  + G     +I    +          I  D+S+    E  +
Sbjct: 269 QQIEKLKQTGYFIFETDSLRKDGTVTPQEINNRLIEYEGEAAVLSIGRDISEQKKNEEAL 328

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL---------AFLATNPSN 352
                    +       IA FD    +   N SFV L              + L     +
Sbjct: 329 RASERKYRTLFEEFPGGIAQFDTGGVITLCNESFVNLTGNREKEKISFSLLSLLDGGNPD 388

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GG 411
           +      +S   LPE       K    +  ++         +P   T   +++ N    G
Sbjct: 389 E------KSGTYLPEVSVHNDLKYISRNGKEA---------IPVAITYKPLMSENSELAG 433

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I + E+LT    LE       +   + +D +         +G     N AF +    ++
Sbjct: 434 GIVLVEDLTGIKRLEAVRLQQTECLRKLVDSVPVPAFCKDRNGIYIACNTAFETFMSMQK 493

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             +   +      +  +   +  D   L       ++   K   G++  +  + L +S +
Sbjct: 494 EEILGKSMHNFAPSEIAEKCHTMDIELLKHKKTRVYETSIKFADGSIHQIMFNKLVFSGV 553

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              ++  +   +++T+  +AE  + +   A   A+  K +F+ ++S+ELR+PL  +IGF+
Sbjct: 554 TEEDSMLLGIMIDITEHKQAEEKMLQAKMAAEAANRAKINFIVNMSHELRTPLNAVIGFS 613

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLL +   G LN KQ +Y E IS S + LL+++ND+LD++ ++ G ++L Y T+ +  ++
Sbjct: 614 DLLLSETAGPLNEKQKRYTENISKSGSHLLDVINDVLDISRLELGNIELYYETVDIPGVI 673

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            EV++ +++   E NIRI+   +  L +   DR +  QI   +L+NA+ FSS+   V +K
Sbjct: 674 EEVRRVLSSLSAEKNIRIEYKVEQGLKTIDVDRVKFKQILYNLLNNAIKFSSEDGKVNIK 733

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
           A  +      SVK+ G  I E     VF  FV        +  GVGLGL++V+ F+ LHG
Sbjct: 734 ARSEGDMVEISVKDEGIGINEADYARVFLPFVQIDESISRKHGGVGLGLALVKRFVELHG 793

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G V + +S    +T   RIP +
Sbjct: 794 GQVWVEASPGKGSTFTFRIPKR 815



 Score = 57.6 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 64/197 (32%), Gaps = 8/197 (4%)

Query: 278 KIVRVLNSFGEAGIAIDVS--KEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRS 334
           ++  ++ + G+  I  D          +     ++ L  +   +I I D    +   N  
Sbjct: 179 EVFDIIEAGGKLLIYRDGRWKHFKIKRESKDKKFKTLIESSNDSILIHDMKGRVMEANHV 238

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
             E++    + +        + +     + +      +  K+  + ++++    KD    
Sbjct: 239 ACEIFGYTRSKILGKH----IKDLQTGIHLIEFGQQIEKLKQTGYFIFETDSLRKDGTVT 294

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           P      +I         + +  +++ Q   E       +      +    G+A F   G
Sbjct: 295 PQEINNRLIEYE-GEAAVLSIGRDISEQKKNEEALRASERKYRTLFEEFPGGIAQFDTGG 353

Query: 455 RIKLSNPAFRSLWKTEE 471
            I L N +F +L    E
Sbjct: 354 VITLCNESFVNLTGNRE 370


>gi|323700495|ref|ZP_08112407.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460427|gb|EGB16292.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1086

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 138/665 (20%), Positives = 254/665 (38%), Gaps = 61/665 (9%)

Query: 159 VSGSCAFLRI---LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
             G   FL+I        +  E+ + T    +++        L D L   V+ +     I
Sbjct: 309 AVGGLIFLKIQVNRKTAHLREEIEQRTRAEAQVARSREWMHSLLDHLPLSVYLQTGKHRI 368

Query: 216 LWANISYKKNTET--EGIVFQKAIGESRKLFKEEIKKRMISSSAL--EKNFCETVSTLEH 271
            +AN  +++      +G   +   G          ++ + S  AL  E    +  + L  
Sbjct: 369 AFANEHFRRTLGRCEDGPCHEVIYGRREPCVHCRTREVLESGRALTWETTTRDGATLLV- 427

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
              ++     +  +      A+D+S     E+ +++       ++ N+   +  FD+   
Sbjct: 428 ---RNLPFRDMDGTPVVLAAAMDISGMKRIEVALHESENLYRTLIDNMPDIVMRFDRESR 484

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
             F +R+ +EL  +  +      S        R      E    + W E+I  V+++ E 
Sbjct: 485 HLFVSRNVLELTGVPASAFLGKTS--------RELGIDEEL--CRFWDEHIRRVFETGEP 534

Query: 388 HKDTWHL-PNGQTLHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGET 439
               +H+   G++ H      P     G    +F    ++T Q  LE +Y  L       
Sbjct: 535 QAAEFHMNWRGRSSHFDWRLFPERDESGEVQSVFSLSRDITRQRSLEKEYELL---FHRM 591

Query: 440 IDHLSEGVAVFGPDG-----RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +D  +    +    G     R    NPAF  +       +  G  +  +     RY+ E+
Sbjct: 592 LDGFASHEIICDEAGVPVDYRFLRVNPAFERITDVTAADIV-GRTLLEVFPGTERYWIET 650

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            G          F+              D     S       Q    F ++T+ V   RA
Sbjct: 651 YGKVALTGEPIHFEHYAAE--------QDKFFNVSAFRPAPGQFACIFSDITERVLTSRA 702

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +    A  +K+ F+ ++S+E+R+PL  I+G   LL+    G L  +Q++Y  Y  
Sbjct: 703 LVEAKDLAESASRVKSEFLANMSHEIRTPLNGIMGMLQLLR---AGDLTEEQAEYAAYGI 759

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S  L  L+ DILDL+ ++AG + +    + L D L+ ++Q  A       + +     
Sbjct: 760 KASRRLTRLLTDILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAARSKGLSLVFDLP 819

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVIL----KAARDNGDFIFSVKNNGS 728
             L      D  R+ Q+   ++ NA+ ++  G  TV +    +   D    +F+V + G 
Sbjct: 820 DDLPDRLFGDDTRIQQVLVNLIGNAIKYTETGGVTVEVTTLPRLRPDTVHVLFTVTDTGI 879

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP+D   +VF  F   +       +G GLGL+I +  I L GG +++ S     T    
Sbjct: 880 GIPDDKLGTVFEHFTQVSSGFTRHYQGAGLGLAITKRMIGLLGGTLAVDSEPGRGTVFGL 939

Query: 787 RIPSK 791
            +P +
Sbjct: 940 CVPLR 944


>gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
 gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
          Length = 1223

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 132/689 (19%), Positives = 271/689 (39%), Gaps = 69/689 (10%)

Query: 154 KIEGRVSGSCAFLRILS-------LDGIYSELAETTLKCKKLS---NHISVFKVLFDSLD 203
             +GR      ++R+++       L G+  ++ E       LS       + +   + L 
Sbjct: 223 FADGR------WVRMVNKRLENGMLVGLRVDVTEFKAHETLLSKQIRETWLLRAALEQLP 276

Query: 204 FLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
             V+ RDQ   + +AN +++K       +  G    +   E    F+ E +  + +  A+
Sbjct: 277 VGVFLRDQDRRLTFANAAFEKFRGGSLADYLGKTECEMFPEEGAEFQRENEHILQTGEAI 336

Query: 259 EKNFCETVSTLEHGN----NKSYKIVRVLNSFGEAGIAIDVS----------KEITVNDQ 304
           EK    T+   + G      +  ++    + +   G   DVS                + 
Sbjct: 337 EKT--GTIPLSDGGAVPVITRLGRVTTPDDEYYLVGSVTDVSLLKERENALIAAQAQAEA 394

Query: 305 LTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSA 362
           L   +E  LH L V + + + +  +++ N  F  LW  I         S  E +E    +
Sbjct: 395 LHRQFETVLHALPVGVLLLNADLVIEYVNPCFDTLWGEIGGEKSLVGKSYREFMEANFES 454

Query: 363 NK-----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                  +P +  +    + + +      T ++     +G+   +  T    G  +  + 
Sbjct: 455 GLYDYGDIPFEELYNQRADRLLN--DKVFTPREVRS-KSGKVTVISKTRLDGGKILSTYA 511

Query: 418 NLTVQV-------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           ++T          + + +   + +        +++G+ +    G I +SN A   ++   
Sbjct: 512 DVTDVRMRDAEISEAKAELERVGEYMQGATRAMAQGLVLV-EQGTIIMSNEAVARMFDVP 570

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLE 527
              L  G +     A C+    +    +  AA +T++ +     +     + +   + L 
Sbjct: 571 PQLLEKGCNWSGFFAHCAGR-GDFGTKEEAAATLTAWREHIAANRPFSWLIHIAGKTWLN 629

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      ++   +VT+    E  L         AD  K+ F+ ++S+E+R+P+  +
Sbjct: 630 LEATNSSGNYWLIIVTDVTEMKMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGV 689

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  +LL  S   +L+++Q  + + I  S   LL ++NDILD + ++AG MKL       
Sbjct: 690 LGMAELLAKS---NLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDP 746

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            + + +V   +++   E NI + V  D  + G  + D  R  Q+ + ++ NA+ F+  G 
Sbjct: 747 AEAVEDVVSLLSSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGH 806

Query: 707 T-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
             + L A             V+++G  IP D  +++F++F        RR  G GLGL+I
Sbjct: 807 VLIELSAQSAEASETILSLRVEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAI 866

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
               + L  G +++ S     +T    IP
Sbjct: 867 TVGLVGLFDGTINVVSEVGKGSTFEVNIP 895



 Score = 84.6 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 99/327 (30%), Gaps = 20/327 (6%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF--QKAIGESRKLFKEEIKKRMIS 254
               +LD     +D     L  N +Y +        F    ++  S  +   E + R   
Sbjct: 13  GAIAALDLPACIKDSELRYLMVNAAYGRVMGRPPAAFTGHTSLALSADIRDAEREDRERR 72

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV---------NDQL 305
           S     +   +            +  R     G      +V +E+           +  L
Sbjct: 73  SLVFATDEVISCHGAASSGPYKLRCERFTGDDGSL-FLFEVFEEVPSVVKGVSDGGSADL 131

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR----S 361
                ++  +   I I+D+   L + N  FVE +      L      + L+E +      
Sbjct: 132 LFDSGVIDLIDAGIVIYDRENRLVYCNARFVEFYSDFNLQLKPGTRLETLMEAVYFSSGY 191

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
            +   +  +++ W +     +      +      +G+ + ++      G  + +  ++T 
Sbjct: 192 RSVKSDDPDYQAWLQKQLRDFSLPYLER-VEQFADGRWVRMVNKRLENGMLVGLRVDVTE 250

Query: 422 QVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
               ET  +  ++   +    ++ L  GV +   D R+  +N AF              T
Sbjct: 251 FKAHETLLSKQIRETWLLRAALEQLPVGVFLRDQDRRLTFANAAFEKFRGGSLADYLGKT 310

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIIT 505
                    + +  E++        I 
Sbjct: 311 ECEMFPEEGAEFQRENEHILQTGEAIE 337



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 83/268 (30%), Gaps = 18/268 (6%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L   Y  +  L +   I D        N ++  +     A    + S     +   +  +
Sbjct: 8   LEKAYGAIAALDLPACIKDSELRYLMVNAAYGRVMGRPPAAFTGHTSLALSADIRDAERE 67

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL----T 420
             E+ +     + + S + ++ +                       G++++FE      +
Sbjct: 68  DRERRSLVFATDEVISCHGAASSGPYKLRCE---------RFTGDDGSLFLFEVFEEVPS 118

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           V   +    +  +      ID +  G+ ++  + R+   N  F   +     +L PGT +
Sbjct: 119 VVKGVSDGGSADLLFDSGVIDLIDAGIVIYDRENRLVYCNARFVEFYSDFNLQLKPGTRL 178

Query: 481 RNIAATC----SRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPN 535
             +             +SD  D  A +     D     L+   +      +      L N
Sbjct: 179 ETLMEAVYFSSGYRSVKSDDPDYQAWLQKQLRDFSLPYLERVEQFADGRWVRMVNKRLEN 238

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALR 563
              +   V+VT+    E  L+++     
Sbjct: 239 GMLVGLRVDVTEFKAHETLLSKQIRETW 266


>gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1478

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 108/501 (21%), Positives = 216/501 (43%), Gaps = 37/501 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           ++   I+ +L+  + + ++N  ++  N + + L       L   P    L  F +  N L
Sbjct: 273 SYLDNIISSLSDGLIVLNKNIRVESFNEATLFLSGYSPKELRDQP----LERFFKEDNFL 328

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-GTIWMFENLTVQVD 424
                  + +      Y+++   K    +P   T  V+  S+ R  G + + ++++ +  
Sbjct: 329 AHLQANDSQQSGFLGRYETTFFTKTGTSVPVSVTASVMKNSSDRIQGIVCLVQDISARKR 388

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                +  ++ Q    + + +GV V    G I   NPA   ++  E+  +        + 
Sbjct: 389 A----DEALRRQALMFETIYDGVIVTDLKGHILDWNPAAERIFGYEKTEV--------LG 436

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNA----- 536
            TC   Y   +   L   ++ S   E +  +    +  D    V E  ++PL +      
Sbjct: 437 QTCGMVYQPDEATALTQQMLDSLLHEGRWTREIEFIRKDGNKGVCETVVVPLRDDLGRPI 496

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +VT+    E  L E  EA  +A   K  F+ ++S+E+R+P+  ++G ++LL T
Sbjct: 497 AAIGVNRDVTERKEYENKLVEAREAAVEAARAKAQFLANMSHEIRTPMNGVLGMSELLLT 556

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q  +V+ +  S   LL ++NDILD + ++AG M+L+   + +N  L +V  
Sbjct: 557 T---DLNPRQLDFVKTLQVSGEHLLGVINDILDFSKLEAGEMRLDVDELNINRSLEDVLD 613

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712
             + +    ++ + ++ D  +    + D  RL QI + ++SN++ F+  G  VI  +   
Sbjct: 614 LCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQICTNLVSNSIKFTESGEVVIRVSVHQ 673

Query: 713 ---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
               +D     F+V++ G  I  +    +F  F        R   G GLGL+I +  + +
Sbjct: 674 ELEEQDKLQLRFAVRDTGIGINPEDKSKLFQAFSQVDSSTTRKYGGTGLGLAICKQLVEM 733

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG + + S     +T    I
Sbjct: 734 MGGEIGVESQLGVGSTFWFTI 754



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/152 (8%), Positives = 44/152 (28%), Gaps = 20/152 (13%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           G   +  D+S     ++ L     +   +   + + D   ++   N +   ++  +   +
Sbjct: 375 GIVCLVQDISARKRADEALRRQALMFETIYDGVIVTDLKGHILDWNPAAERIFGYEKTEV 434

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS--VYKSSETHKDTWHLPNGQ--TLHV 402
                             + +        + +    +++   T +  +   +G       
Sbjct: 435 LGQTC-----------GMVYQPDEATALTQQMLDSLLHEGRWTREIEFIRKDGNKGVCET 483

Query: 403 IVTSNPRG-----GTIWMFENLTVQVDLETKY 429
           +V             I +  ++T + + E K 
Sbjct: 484 VVVPLRDDLGRPIAAIGVNRDVTERKEYENKL 515


>gi|307943987|ref|ZP_07659329.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4]
 gi|307772828|gb|EFO32047.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4]
          Length = 1168

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 124/656 (18%), Positives = 246/656 (37%), Gaps = 38/656 (5%)

Query: 168 ILSLDGIYSELAE----TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
           I +L  + +E            ++     +    + +++   V   + +GD+L  N + +
Sbjct: 241 IKNLSDLAAEEQRKNKALQAATQRAEQGEAQVSAILENMLDGVLTLNPSGDVLSINPAAQ 300

Query: 224 KNTETEGIVFQK---------AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           +    +     +         AI +  K    +   R+ + S       ET +    G +
Sbjct: 301 EMFGLQDEDSLENIEVFKVLPAIAQLIKPLSMDEVGRIRAGSDSSSKRLETSARRLDGQH 360

Query: 275 KSYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNR 326
              ++       G       I  D++ +    ++L      L     +L     ++D++ 
Sbjct: 361 FPSELSLTRTRLGGVETFTAIVRDLTDQKKAAEELRRAETRLVDAIESLPDGFVLYDKDD 420

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            L   N  + E + +           ++++       +   Q +  T  + I    +   
Sbjct: 421 RLVVCNSKYKEFYHLSADLSEPGNRFEDIIREGAHRGQY--QFDAGTVDDRIEQRLEQHR 478

Query: 387 THKDTWH--LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              +     L +G+ L V       GG +    ++T     E +      +    +    
Sbjct: 479 NPGEPMEQFLADGRWLRVFEARTSEGGLVGFCVDITELKHREQELLRSQGLLQNVVSASF 538

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +GV V   +G +   NPA   ++    + +        I     R  +E+      A   
Sbjct: 539 DGVIVMNAEGVVLDFNPAAEDVFGWTSDEIVGERLSDFIIPEHLREAHEAGLSHYLATGE 598

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEA 561
                +R  +QG  +      +E +I    +      +    ++T+   A+ AL +  E 
Sbjct: 599 GPVIGKRIEIQGLHKQGHILEVELAIRQTTSDTGPLFLGYVRDITERKAADEALRDAKER 658

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+E K  F+  +S+E+R+P+  ++G   LL+ +   +LN  Q  YV+    S   LL
Sbjct: 659 AEAANEAKAKFLAMMSHEIRTPMNGVLGILSLLRDT---NLNPAQEIYVKTARESGRSLL 715

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
            L+NDILD + ++A  ++L+ +   L   +  V         E  + +       L    
Sbjct: 716 ELINDILDFSKLEASRVELDQAPFNLRTAVKSVVDLFTPIAQEKALELNWRFPSDLPRNV 775

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCK 736
           V D  RL Q+    +SNA+ F+  GS  V +   + +     F FSVK+ G  IP +   
Sbjct: 776 VGDAGRLRQVLLNFVSNAIKFTELGSVEVNVGLEKSDPQKPVFRFSVKDTGIGIPAEKHD 835

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++F  F  V  A   +  G GLGL+I +   +L  G +++ S     +T +  +P 
Sbjct: 836 ALFGDFVTVDGASTKRYGGTGLGLAISKQIADLMEGEITLESLPGAGSTFHFFVPL 891


>gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 892

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 120/505 (23%), Positives = 225/505 (44%), Gaps = 33/505 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E ++ ++      +  +   AI I +  + L   N+   E + +    L  N S   LL 
Sbjct: 87  EESLKEKDKRYRALFEHSNDAIIILNGEKVLDL-NKKGREAFGLGARELD-NISIGSLL- 143

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSN----PRGGT 412
                     + +    ++ + +  ++     +  +   NG+ + V V+S+      G  
Sbjct: 144 ---------SEKDLPAVRDALKTTLENGSACFEMKFRKQNGEVIDVEVSSSFLSLEEGEI 194

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEE 471
             +  ++T +   E       +   + ID+   G+ +       I  +NPA         
Sbjct: 195 QCVARDITTRKKAEKNERESRERLKKIIDNALCGILLVDASTHEIVDANPAAVEAIGLPG 254

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           +RL+     + I   C     +    D   ++  S   ER  L G  E  S  VL+ S++
Sbjct: 255 HRLTGNVCHKFI---CPVEEGKCPITDFKQSVDKS---ERMLLNGKGE--SFPVLK-SVV 305

Query: 532 PL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           P+    N   + +F+++++  + E  L +   A   A+  K+ F+ ++S+ELR+PLT II
Sbjct: 306 PVKIGENEYLIESFIDLSERKKTEEELLQAKLAAESANRAKSEFLTNMSHELRTPLTAII 365

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+D++     G  + +  +++  I+ S   LL L+N+ILDL+ ++AG M+L +    ++
Sbjct: 366 GFSDVMLGGISGEFSEQNKKFLNNIANSGKHLLTLINNILDLSKIEAGKMELEFEMFSVS 425

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           ++ N+ +   +    + +I +K   D ++    ADR R  QI   ++SNA+ F+    +V
Sbjct: 426 EVFNDTRAVTSALALKKDISMKYNVDSEI-LVYADRVRFKQIIYNLVSNAIKFTPDRGSV 484

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
           I+ A +       SV + G  I E+  K +F  F            G GLGL++V+ F+N
Sbjct: 485 IVSALKTEDSVRISVSDTGIGISEENQKLLFQPFRQIDASINRHYEGTGLGLALVKKFVN 544

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           LHGG V   S     +T    +P K
Sbjct: 545 LHGGRVWAESEPGKGSTFEFELPLK 569



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 106/290 (36%), Gaps = 18/290 (6%)

Query: 30  IAGMLLTTIIPIILL--IRQRNSLAKKVNETYSFLSE--ICDQLSKYHSLLTENNCLTIV 85
           + G+L  ++     L     R  +  +        +E  + ++  +Y +L   +N   I+
Sbjct: 51  LGGLLTLSVYLAFALGIFSLRRWMELENALVLQEKTEESLKEKDKRYRALFEHSNDAIII 110

Query: 86  WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS-FDLV 144
            +G+    ++  +  +   +   + D +S  + L       +  A +   + G + F++ 
Sbjct: 111 LNGEKVL-DLNKKGREAFGLGARELDNISIGSLLSEKDLPAVRDALKTTLENGSACFEMK 169

Query: 145 AETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
              QN   I +E  VS S   L    +  +  ++       K         K + D+   
Sbjct: 170 FRKQNGEVIDVE--VSSSFLSLEEGEIQCVARDITTRKKAEKNERESRERLKKIIDNALC 227

Query: 205 LVWHRDQA-GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
            +   D +  +I+ AN +     E  G+   +  G     F   +++     +  +++  
Sbjct: 228 GILLVDASTHEIVDANPA---AVEAIGLPGHRLTGNVCHKFICPVEEGKCPITDFKQSVD 284

Query: 264 ETVSTLEHGNNKSYKI--VRVLNSFGEAGIA----IDVSKEITVNDQLTH 307
           ++   L +G  +S+ +    V    GE        ID+S+     ++L  
Sbjct: 285 KSERMLLNGKGESFPVLKSVVPVKIGENEYLIESFIDLSERKKTEEELLQ 334


>gi|332521563|ref|ZP_08398017.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042962|gb|EGI79161.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
          Length = 1514

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 128/660 (19%), Positives = 267/660 (40%), Gaps = 51/660 (7%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE----- 227
            G+  ++ +  +  +KL N   +F+ L  +    ++  D  G   + N ++ K  +     
Sbjct: 862  GMALDVTDRKIAEEKLINSEKLFRELTSNAPVGIFKMDLDGTCNYVNATWVKYADMSYND 921

Query: 228  TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS-- 285
              G  + +AI    +     ++  M + S  +  + +     + G      +  V     
Sbjct: 922  AMGFGWTQAIHPEDR--DRVLQSWMKAVSLKKNYYVDLRFKNKKGKITWLSVSAVRTFNA 979

Query: 286  ----FGEAGIAIDVSKEITVND----QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                +G  G+A+DV+ +            +   I++N+   + + D+N  L   N +   
Sbjct: 980  NNKLYGYIGVALDVTTKKNNEKLEIKHKQYLNNIINNIGDPVFVKDENSKLILVNNALCS 1039

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD--TWHLP 395
            L+ +    +      +++    R       +++ +     + +V + + +  +     L 
Sbjct: 1040 LFNLPREQILGKTLTEKVPYEERERFL---EIDKQVLATGVENVNEETVSLNNQIIRTLS 1096

Query: 396  NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
              +T ++ V++      I +  ++T +   E K     +   +     + G ++   D  
Sbjct: 1097 VKKTRYIDVSNKKL--LIGVIRDITERKKDEIKIKESQEKFLKVFQSSAIGYSIINMDQI 1154

Query: 456  IKLSNPAFR-SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
                N A    L  T E+ +        +    ++YY + D   LF  ++T      + L
Sbjct: 1155 RIDVNEALAGMLETTREHLIGNKLEDPTVEIIDAKYYEQKD--KLFKKMMTQGFLSNEKL 1212

Query: 515  QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--------------------- 553
              TL       L  S+  +           V D+   ++                     
Sbjct: 1213 TRTLVSGKKISLLVSVEAIEIGGEPHALFAVIDNTEKQKSELELEIYRNKLEDLVELRTL 1272

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L ++ E  + AD +K++F+  +S+ELR+P+ +IIGFT +L     G LN +Q + +  +
Sbjct: 1273 ELEKEKEKAQSADLMKSAFLATMSHELRTPMNSIIGFTGILLKQLAGPLNDEQKKQLTMV 1332

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S   LL+L+NDILD++ ++AG + + YS     ++L +    +  +  +  ++IK   
Sbjct: 1333 KSSGESLLSLINDILDVSKIEAGKLNVAYSAFKYLEILEKTIAFLTPQAEKKGLKIKTEI 1392

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                    +D +R+ QI   ++SNA+ FS+KG  + +K   +    I  + + G  I   
Sbjct: 1393 SNFDIVIESDERRVEQILLNLISNAIKFSNKG-IISIKVKLEGNFVITKIIDQGIGIEAK 1451

Query: 734  MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              K++F  FV        +  G GLGLSI +S +   GG + + S     +T   ++P K
Sbjct: 1452 HIKTLFEPFVQLEAGLSRRHEGTGLGLSISKSLVEKLGGEILVKSQLGEGSTFTFKLPLK 1511



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 165/475 (34%), Gaps = 60/475 (12%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT- 226
                 G+  ++ E     +KL     +FK L       ++  D  G   + N  + +   
Sbjct: 730  FQGYVGLLIDITERKAAEEKLIKSEHLFKRLTSKAPAGIFQTDANGYCNYVNERWIEYAG 789

Query: 227  ----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                E  G  +  AI    +       +  + SS+ E          ++G      +  V
Sbjct: 790  IDYNEAMGYGWADAIHPDDRERITIEWEAYMKSSSKELETSFRFKH-KNGKITWVSVKTV 848

Query: 283  LNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHN 332
                      G  G+A+DV+      ++L ++ ++   L     V I   D +    + N
Sbjct: 849  GTFDSKNNINGYIGMALDVTDRKIAEEKLINSEKLFRELTSNAPVGIFKMDLDGTCNYVN 908

Query: 333  R---SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW--KTWKENIFSVYKSSET 387
                 + ++            S ++ + F  +    PE  +   ++W + +    K +  
Sbjct: 909  ATWVKYADM------------SYNDAMGFGWTQAIHPEDRDRVLQSWMKAV--SLKKNYY 954

Query: 388  HKDTWHLPNGQTLHVIVTS-------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
                +    G+   + V++       N   G I +  ++T + + E       +     I
Sbjct: 955  VDLRFKNKKGKITWLSVSAVRTFNANNKLYGYIGVALDVTTKKNNEKLEIKHKQYLNNII 1014

Query: 441  DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            +++ + V V   + ++ L N A  SL+     ++   T    +       + E D   + 
Sbjct: 1015 NNIGDPVFVKDENSKLILVNNALCSLFNLPREQILGKTLTEKVPYEERERFLEID-KQVL 1073

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
            A  + + ++E  SL   + + + SV +   I + N + ++  +         R +TE+ +
Sbjct: 1074 ATGVENVNEETVSLNNQI-IRTLSVKKTRYIDVSNKKLLIGVI---------RDITERKK 1123

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               K  E +  F       L+   ++ IG++ +        +N   +  +E    
Sbjct: 1124 DEIKIKESQEKF-------LKVFQSSAIGYSIINMDQIRIDVNEALAGMLETTRE 1171


>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
 gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
          Length = 1362

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 103/506 (20%), Positives = 195/506 (38%), Gaps = 20/506 (3%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +  Q      IL ++   + + DQ+    F N +  ++  I    +  +  +     
Sbjct: 410 QKQLRRQSQILQSILDSMGDGVIVADQDGNSVFWNPAAEQIVGIGPQNVDPDKWSQIYGC 469

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRG---GT 412
           +L     +    +    +            + +   +P G  + V      N RG   G 
Sbjct: 470 YLADGKTMCPSRDLPLARAMRGESLDEVVLYLENPDIPEGTWISVTARPLRNDRGELRGG 529

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +  ++T     + +  +  +     +    E          I   N      +     
Sbjct: 530 VIVMRDITESRANQEELQSRDEKNRAILATTHESYIAINEKSLICEWNEQAEVTFGWSYA 589

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                +    I        +         +    F ++R  L        +  +E +I P
Sbjct: 590 EAIGRSLEETIIPERYWLQHTHGIEHYLRSGEGPFLNKRLELSAMHRDGHEFPVELTITP 649

Query: 533 LPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +P     L    + D     +AE  L +  EA   A   K++F+  +S+E+R+P+  +IG
Sbjct: 650 VPQGSGFLFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIG 709

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            T+LL  +    LNS Q +Y+  +  S   LL+++NDILD + ++AG   L  +   L +
Sbjct: 710 MTELLLDT---DLNSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRE 766

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L +  +S+A + H  ++ +    D  +  + V DR RL QI   ++ NA+ F+ +G  +
Sbjct: 767 NLGDTMRSLAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEEGE-I 825

Query: 709 ILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
           +L    D          F V++ G  IPED  + +F  F        RR  G GLGL+I 
Sbjct: 826 VLDVNYDFQSKNELQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIA 885

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
              I + GG + ++S     +  +  
Sbjct: 886 SRLIEMMGGKIWVNSEVGKGSEFHFT 911



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 10/171 (5%)

Query: 416 FENLTVQVDLE-----TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            E+   Q   E      +     ++    +D + +GV V   DG     NPA   +    
Sbjct: 395 LEDRIEQRTAELKASQKQLRRQSQILQSILDSMGDGVIVADQDGNSVFWNPAAEQIVGIG 454

Query: 471 ENRLSP--GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              + P   + I        +    S    L  A+     DE        ++   + +  
Sbjct: 455 PQNVDPDKWSQIYGCYLADGKTMCPSRDLPLARAMRGESLDEVVLYLENPDIPEGTWISV 514

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +  PL N +  L    +      E   +  N+   ++ + KN  +   ++E
Sbjct: 515 TARPLRNDRGELRGGVIVMRDITE---SRANQEELQSRDEKNRAILATTHE 562



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 93/313 (29%), Gaps = 57/313 (18%)

Query: 170 SLDGIYSEL--------AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
            L     EL        AE     K+L     + + + DS+   V   DQ G+ ++ N +
Sbjct: 387 ELSASREELEDRIEQRTAELKASQKQLRRQSQILQSILDSMGDGVIVADQDGNSVFWNPA 446

Query: 222 YKKNTETEGIVFQKA---------IGESRKLFKE---EIKKRMISSSALEKNFCETVSTL 269
            ++                     + + + +       + + M   S  E         +
Sbjct: 447 AEQIVGIGPQNVDPDKWSQIYGCYLADGKTMCPSRDLPLARAMRGESLDEVVLYLENPDI 506

Query: 270 EHG-----NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
             G       +  +  R     G   +  D+++     ++L    E       AI     
Sbjct: 507 PEGTWISVTARPLRNDRGELRGGVIVM-RDITESRANQEELQSRDEK----NRAILATTH 561

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV--- 381
             Y+  + +S +  W  + A +    S  E +        +PE    + W ++   +   
Sbjct: 562 ESYIAINEKSLICEWN-EQAEVTFGWSYAEAIGRSLEETIIPE----RYWLQHTHGIEHY 616

Query: 382 ------------YKSSETHKDTWHLPNGQTLHVIVTSNPRGG---TIWMFENLTVQVDLE 426
                        + S  H+D    P    + + +T  P+G          ++TV+   E
Sbjct: 617 LRSGEGPFLNKRLELSAMHRDGHEFP----VELTITPVPQGSGFLFAAFIHDITVEKQAE 672

Query: 427 TKYNTLVKVQGET 439
            +     +     
Sbjct: 673 EELRQAKEAAEAA 685


>gi|297621362|ref|YP_003709499.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
 gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
          Length = 1005

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/522 (18%), Positives = 210/522 (40%), Gaps = 34/522 (6%)

Query: 295  VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            V     +N+    T  +LH++   +   ++ + + F N +   +  +    +   P  + 
Sbjct: 491  VKAMNELNESKIQTEVLLHSMGEGVFGLNKKKKVAFVNPAGEHMVGMRQEDVVGKPIQEL 550

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH---KDTWHLPNGQTLHVIVTSNPR-- 409
                L  +++ P    +      I+ V++    H    + +   +G + +V  T  P   
Sbjct: 551  F--HLMKSDETP----YHIKDSAIYKVFEDGRMHTVNNELFCRKDGTSFNVEFTCGPLRR 604

Query: 410  ----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                 G + +F ++T ++  E +     +     ID+ +  + V    GR  ++N  +  
Sbjct: 605  EDTIEGVVLVFRDITNRIRAEAEIKETQRRLRAIIDNATSVIYVKDLKGRYLIANKQYLD 664

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            L+      +   T     +   +  ++ +D   L      ++++      G    +S   
Sbjct: 665  LFHLTNEEVIGKTDYEIFSKDVADKFSLNDNDVLEKGKAVTYEETAPLDDGEHTYVSVKF 724

Query: 526  LEY-------------SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
              Y             + I     Q +     +    ++ + L    +   +A+  K++F
Sbjct: 725  PLYDAEDNIYATCGISTDITERKEQELKQLEFLKQIEQSNQDLEIARKKAEEANIAKSTF 784

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            + ++S+E+R+PL  +IG T LL  +    L+  Q +Y   I  S  +LL ++NDILD + 
Sbjct: 785  LANMSHEIRTPLNGVIGMTSLLLNT---PLDKSQEKYANRIDLSGKVLLEIINDILDFSK 841

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIF 691
            ++AG + L      L +++ EV + +  K  E  + +++  +       + D  R+ Q+ 
Sbjct: 842  IEAGELNLEKIPCNLEEIVEEVGELMQPKAEEKGLNLEISYAHDTPKHLIGDPTRIRQVI 901

Query: 692  SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
              + SNA+ F+ +GS  I  +          V + G  IP++    +F +F        R
Sbjct: 902  MNLTSNAIKFTQEGSVAIKVSNPKKAFIRVEVTDTGIGIPQEKKMHIFEKFSQADVSTTR 961

Query: 752  --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               G GLGL+I +  I +  G +   S +   +T    IP +
Sbjct: 962  KFGGTGLGLAICKQLIEIMEGKIGCESIENKGSTFWFEIPLQ 1003



 Score = 41.1 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 31/193 (16%)

Query: 135 RKEGQSFDLVAE-TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
           RK+G SF++            IEG        L    +       AE     ++L     
Sbjct: 587 RKDGTSFNVEFTCGPLRREDTIEG------VVLVFRDITNRIRAEAEIKETQRRL----- 635

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRM 252
             + + D+   +++ +D  G  L AN  Y        +  ++ IG++  ++F +++  + 
Sbjct: 636 --RAIIDNATSVIYVKDLKGRYLIANKQYLDLFH---LTNEEVIGKTDYEIFSKDVADKF 690

Query: 253 ISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVLNS-----FGEAGIAIDVSKEITVN 302
             +        +    E  + L+ G +    +   L       +   GI+ D+++     
Sbjct: 691 SLNDNDVLEKGKAVTYEETAPLDDGEHTYVSVKFPLYDAEDNIYATCGISTDITER---K 747

Query: 303 DQLTHTYEILHNL 315
           +Q     E L  +
Sbjct: 748 EQELKQLEFLKQI 760


>gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1043

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/651 (18%), Positives = 252/651 (38%), Gaps = 41/651 (6%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           RI +     + LA T      L+   + ++ + +S+ F VW  +  G I + + S+ +  
Sbjct: 255 RIQAEYERANALAATQATANALAASEARYRAIGESIPFGVWICNPNGSINYLSDSFLELI 314

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF---CETVSTLEHGNNKSYKIVRVL 283
                  QK+    +    +  +        +       CE       GN  +     V 
Sbjct: 315 GMTLEECQKSGLSGKLPPADVDRTCSEWRECINSGSVWDCEHKFLGIDGNYHTILSRGVP 374

Query: 284 NSFGEAGIA------IDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNR 333
                  IA      +D+++       L         IL ++    A FD      + NR
Sbjct: 375 VRDSSGAIANWVGINLDITERKQTEAALQKASQEIVNILESIGDGFASFDGEWRYTYINR 434

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTW 392
              E+     + +      +            PE  +   +++ + +  ++ +  ++  +
Sbjct: 435 KGEEILGKQRSQILGKIVWEVF----------PELKDTPYYEQILQAKAENLNFEYEHLF 484

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              + +   +     P G  ++ F+++T +   E       +     +   S G+     
Sbjct: 485 PPLDNRWFALRWHPTPEGMCVY-FQDITERKLTEAALRATEEKLKSFVAAASIGIVFADI 543

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGT-HIRNIAATCSRYYNESDGWDLFAAIITS-FDDE 510
            G I  +N  F  +       L  G      I        +E    +     ++  ++ E
Sbjct: 544 YGSITDANAEFLRIVGYSREHLRRGELRWTEITPPEYLPLDEQSIKEGKKTGVSPPYEKE 603

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                G+   +   ++ + ++     +++   +++T+  + E AL ++ E L +A+ +K+
Sbjct: 604 YIRSDGSRVPV---LIGFILVGEQREESVAFILDLTERKQLEAALHQRAEELLQANRLKD 660

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+PL  ++G+T LL++ K      K ++ +E I  ++  L  L+ D+LD+
Sbjct: 661 EFLATLSHELRTPLNAMLGWTQLLRSRKFD--EEKTARALETIDRNTKSLAALIEDLLDV 718

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +  G ++LN   + L  ++    +++       +I+I  + D ++     D  RL Q+
Sbjct: 719 SRIITGKLRLNLRLVDLVSVVEAAIETVIPAAQAKSIQIIPLLDERIERISGDSSRLQQV 778

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDF------IFSVKNNGSSIPEDMCKSVFNRFVS 744
              +LSNA+ F+  G  V +   R   +          V + G  I  +    VF+RF  
Sbjct: 779 IWNLLSNAIKFTPNGGCVTIAIHRVGSELEGNFCAEIEVTDTGQGINPEFLPHVFDRFSQ 838

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
                 R   G+GLGL+IV   + LHGG V   S      +    R+P  E
Sbjct: 839 ADSTTTRSYSGLGLGLAIVRHLVELHGGTVKADSQGSGKGSAFTVRLPLPE 889



 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 71/538 (13%), Positives = 159/538 (29%), Gaps = 84/538 (15%)

Query: 130 ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL---RI-LSLDGIYSELAETTLKC 185
           A  + R     F  V+ T     + +E   +G+  ++   R+   +  +   L E   + 
Sbjct: 69  AIAQARCSDVPFIFVSATL-GEELAVETLKNGATDYVVKERLGRLVPAVKRALREAQERR 127

Query: 186 KKLSNHI------SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
            +L            F+++ D+   ++W  D      + N  + + T             
Sbjct: 128 DRLLAEAARQESEERFEIMADTAPVMIWMSDTDKLCDYFNKPWLEFTGRTLAEEIGNGWA 187

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLE---HGNNKSYKIVRVL------NSFGEAG 290
                 +  +     ++A +      +        G  +      +          G  G
Sbjct: 188 QGVHPDDVERCLDTYTTAFDARLDFKIEYRLKRFDGEYRWLLDTAIPRFNADGTFVGYIG 247

Query: 291 IAIDVSKEITVNDQL------------------THTYEILHNLTVAIAIFDQNRYLQFHN 332
             ID+S  I    +                        I  ++   + I + N  + + +
Sbjct: 248 SCIDISDRIQAEYERANALAATQATANALAASEARYRAIGESIPFGVWICNPNGSINYLS 307

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW--KTWKENIFSVYKSSETHKD 390
            SF+EL  +         + +E  +   S    P  ++     W+E I S       HK 
Sbjct: 308 DSFLELIGM---------TLEECQKSGLSGKLPPADVDRTCSEWRECINSGSVWDCEHKF 358

Query: 391 T-----WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                 +H    + + V  +S      + +  ++T +   E       +     ++ + +
Sbjct: 359 LGIDGNYHTILSRGVPVRDSSGAIANWVGINLDITERKQTEAALQKASQEIVNILESIGD 418

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G A F  + R    N     +   + +++        +       + E      +  I+ 
Sbjct: 419 GFASFDGEWRYTYINRKGEEILGKQRSQI--------LGKIVWEVFPELKDTPYYEQILQ 470

Query: 506 S-FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           +  ++     +     L +        P P    +  F ++T+    E AL    E L  
Sbjct: 471 AKAENLNFEYEHLFPPLDNRWFALRWHPTPEGMCVY-FQDITERKLTEAALRATEEKL-- 527

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
                 SFV   S               ++     GS+    ++++  +  S   L  
Sbjct: 528 -----KSFVAAAS-------------IGIVFADIYGSITDANAEFLRIVGYSREHLRR 567


>gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 813

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 147/620 (23%), Positives = 261/620 (42%), Gaps = 41/620 (6%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE-----EIK 249
           FK L ++    +   D  G +L AN       ET G    K IG+  K  +      E  
Sbjct: 178 FKTLIENSGDSILIHDMNGKVLEANHV---ACETFGYTRSKMIGKHIKDLRTSIHLIEFG 234

Query: 250 KRMISSSALEKNFCETVSTLEHG----NNKSYKIVRVLNSFGEAGIAIDVSK----EITV 301
           +++           E  S    G       + +++          I  D+SK    E  +
Sbjct: 235 QQIEKLKQTGYFTFEMDSLRRDGTVIPQEVNNRLIEYDGETAVLSIGRDISKRRQTEKAL 294

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            D       +       IA FD+   +   N +FV        F  +  +   +   L  
Sbjct: 295 RDSERKYRMLFEEFPGGIAQFDKYGTIIVCNENFVN-------FTGSGENEKLIFNLLNP 347

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--------PNGQTLHVIVTSNPR-GGT 412
               PE+   +   E  F+       H D  ++        P   T   +++ N R  G 
Sbjct: 348 ----PEEKKQE---EKGFTCLPEVPIHCDIKYISSLEDEIIPGEITYKPLISENSRFNGG 400

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + E+LT    LE       +   + +  +         +G     N  F +L + ++ 
Sbjct: 401 IILVEDLTEVKRLEAVRLQQTETLRKLVGSIPVPAFCKDRNGVYIACNKGFENLLRVQKQ 460

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +        I    +  Y+  D   +       ++   K   G++  +  +   +S + 
Sbjct: 461 DIIGKHIYDFIPHKIAENYHAMDIGLVKHKRNHVYETSLKFPDGSVHQVMLNKFIFSGVT 520

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             ++  +   +++T+  +AE  + +       A+  K +F+ ++S+ELR+PL  +IGF+D
Sbjct: 521 EEDSVLLGIMIDITERKQAEERMLQAKMVAEAANRAKTTFIVNMSHELRTPLNAVIGFSD 580

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL +  +G LN KQ +Y E IS S   LL+++ND+LD++ ++ G ++L Y T+ +  ++ 
Sbjct: 581 LLLSETVGPLNEKQKRYTENISKSGNHLLDVINDVLDISKLELGNIELYYETVDVAGIIE 640

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV++ ++    + NI I+   +  L + +ADR +L QI   IL+NA+ FSS+   V + A
Sbjct: 641 EVQRVLSPLSADKNIIIESYIEKDLKTVIADRVKLKQILYNILNNAIKFSSENGKVNIYA 700

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
                    SV++ G  I E   + VF  FV        +  GVGLGL++V+ F+ LHGG
Sbjct: 701 EPREDMIEISVEDEGIGIQESDYEKVFQPFVQIDESISRKHGGVGLGLALVKRFVELHGG 760

Query: 771 HVSISSSDEGVTTINCRIPS 790
            V + +S  G +    RIP 
Sbjct: 761 KVWVKASPGGGSIFTFRIPK 780



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 17/224 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                ++ N   +I I D N  +   N    E +    + +        + +   S + +
Sbjct: 176 KKFKTLIENSGDSILIHDMNGKVLEANHVACETFGYTRSKMIGKH----IKDLRTSIHLI 231

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
                 +  K+  +  ++     +D   +P      +I   +     + +  +++ +   
Sbjct: 232 EFGQQIEKLKQTGYFTFEMDSLRRDGTVIPQEVNNRLIEY-DGETAVLSIGRDISKRRQT 290

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E       +      +    G+A F   G I + N  F +   + EN       I N+  
Sbjct: 291 EKALRDSERKYRMLFEEFPGGIAQFDKYGTIIVCNENFVNFTGSGENE----KLIFNLLN 346

Query: 486 TCSRYYNESDGWDLFAAI--------ITSFDDERKSLQGTLELL 521
                  E  G+     +        I+S +DE    + T + L
Sbjct: 347 PPEEKKQEEKGFTCLPEVPIHCDIKYISSLEDEIIPGEITYKPL 390


>gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 891

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 134/587 (22%), Positives = 232/587 (39%), Gaps = 30/587 (5%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-- 280
            K  ET    F KA+        ++I   +I     E+ F   V  L +G  K  + +  
Sbjct: 290 VKPVETSIDAFMKAVHPEDTERMKQIINNVILKGIHEETFYRIV--LPNGEQKVLRSIWE 347

Query: 281 -----RVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
                         G+  DV++    E  + +       +  +  + I   +   ++   
Sbjct: 348 AEMDEHAGKPVQVVGMIQDVTEHREIEQRLRESENRYKSLFQHNPLGICAMNMEGHILSV 407

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N S  +L       L       E+L    S  +   + + +  K+     Y+S   HK+ 
Sbjct: 408 NPSLEKLTGYTRDELLG----TEILVMASSEEQDKIKRHIEMAKQGETQTYESEFIHKEG 463

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
             L    T   I       G   + EN+T   +   +   L       ++ +SEG+    
Sbjct: 464 ERLFIKMTNIPIFVQEEIVGCYGIIENVTPLKNYIAQIEKLSNEHSLILNAVSEGIVGLN 523

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            +G ++  NPA   ++         G+ I  I        +  D        I S    +
Sbjct: 524 TEGHVRFMNPAAVEMFGIGSANPLNGSCIDVIRHADEIGSHFPDEQASILQAIRSGASYQ 583

Query: 512 KSLQGTLELLSDSVL-EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                  +    S L  Y I PL +       V V      E+ +    E+  +AD  K+
Sbjct: 584 AEEAVFWKKDGSSFLASYRISPLMDNGERKGAVMVFVDRTNEKEIIRAKESAERADRAKS 643

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+P+  IIG   LL  ++   L+ +Q  Y++ I++SS  L+ ++N+ILDL
Sbjct: 644 EFLSVMSHELRTPMNGIIGMAGLLADTE---LDEEQRSYIDIITSSSNALMQILNEILDL 700

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + ++AG M L + + VL D++  V     T+  E  I+++   D ++    V D  R+ Q
Sbjct: 701 SKIEAGKMSLLHESFVLEDVVGSVADLFMTQAMEKGIQLEWHVDQEMPGMLVGDHVRIRQ 760

Query: 690 IFSKILSNAMDFSSKGST---VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFV 743
           I   ++SNA+ F+ +G     V  KA           FSV + G  IP D    +F  F 
Sbjct: 761 ILVNLVSNAIKFTERGHVNIFVERKAYSRRKKKCLIEFSVTDTGIGIPADRQHLLFQPFS 820

Query: 744 SNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                   +  G GLGLSI ++ + L GG + + S +    T   ++
Sbjct: 821 QLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDSDEARGATFRFQL 867



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 109/343 (31%), Gaps = 41/343 (11%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           +   +L     + ++    I I  +     + N +F ++   +   L        L    
Sbjct: 3   SAAQRLPLLEHMYNHAPTGIVILSREGKCLYVNPAFCKMVGYEQEELLDIRYYHLLYNEA 62

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-------TSNPRGGT 412
           +    L E   +  W +    VYK+    K       G T+ + +        +  +   
Sbjct: 63  QDQQGLREA--YAGWLKATDQVYKTELRLKHKR----GTTVWLSLELTIFDDEATEQSYL 116

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I    ++T + D+E   +    +     ++  + ++    DG ++  +P+   L    + 
Sbjct: 117 IAYAMDVTEKKDMEQVLSDNEDLYMLITENTPDVISYSTADGILQYISPSVEKLLGYTKQ 176

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +     ++        +  ++D   +      +   +R+        L    LE S   
Sbjct: 177 EMLGKKRLQFY------HIEDADYMRVHGMFKETGIMKRRVRHKDGHYL---WLEVSYRI 227

Query: 533 LPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY---ELRSPL 584
           + + Q      +    N+T+  ++E  L +  +            V +V +   E R   
Sbjct: 228 IRDEQGKIKRVLSIGRNITERQKSEENLAKAQQLAMFGSWD-WDLVNNVMHFSKEFR--- 283

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +I G+             S  +         +  +  ++N++
Sbjct: 284 -SIFGY------RVKPVETSIDAFMKAVHPEDTERMKQIINNV 319



 Score = 44.5 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 56/414 (13%), Positives = 117/414 (28%), Gaps = 56/414 (13%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
             +  + + + +++     +    + G  L+ N ++ K    E             L   
Sbjct: 3   SAAQRLPLLEHMYNHAPTGIVILSREGKCLYVNPAFCKMVGYEQEELLDI--RYYHLLYN 60

Query: 247 EIKKRMISSSALEKNFCETVSTL--------EHGNNKSYKIV------RVLNSFGEAGIA 292
           E + +     A       T            + G      +                  A
Sbjct: 61  EAQDQQGLREAYAGWLKATDQVYKTELRLKHKRGTTVWLSLELTIFDDEATEQSYLIAYA 120

Query: 293 IDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +DV+++  +   L+   ++      N    I+    +  LQ+ + S  +L       +  
Sbjct: 121 MDVTEKKDMEQVLSDNEDLYMLITENTPDVISYSTADGILQYISPSVEKLLGYTKQEMLG 180

Query: 349 NPSND----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                    E  +++R      E             + K    HKD  +L    +  +I 
Sbjct: 181 KKRLQFYHIEDADYMRVHGMFKE-----------TGIMKRRVRHKDGHYLWLEVSYRIIR 229

Query: 405 TSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
               +   +     N+T +   E     L K Q   +     G   +     +   +  F
Sbjct: 230 DEQGKIKRVLSIGRNITERQKSEE---NLAKAQQLAMF----GSWDWDLVNNVMHFSKEF 282

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLEL 520
           RS++      +   T I            E     +   I+    +E   R  L    + 
Sbjct: 283 RSIFGYRVKPVE--TSIDAFMKAVHPEDTERMKQIINNVILKGIHEETFYRIVLPNGEQK 340

Query: 521 LSDSVLEYSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           +  S+ E  +        Q +    +VT+    E+ L E        +  K+ F
Sbjct: 341 VLRSIWEAEMDEHAGKPVQVVGMIQDVTEHREIEQRLRESE------NRYKSLF 388


>gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
          Length = 1209

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 144/803 (17%), Positives = 297/803 (36%), Gaps = 72/803 (8%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           ++ F  +A + L  +   + ++R     A++  E    LS +  + +    ++T+ +   
Sbjct: 171 LSQFSILATIFLLVMASGLFVLRPYTRRARREAEQLRMLS-LVARHTDNAVIITDRDGR- 228

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF-- 141
           I W  +  T  I G     +   +   + L            ++ +A +     G+S   
Sbjct: 229 IEWVNEGFT-RISGYTLDEVR-GRKPGEFLQ-GPETDPATVARIRQALD----NGESVKA 281

Query: 142 DLVAETQNDCA----IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           ++V  T+        + I          +R ++++   ++  E     +           
Sbjct: 282 EIVNYTKQGRPYWLALNISPVYDDQHNLIRFIAIESDITQQKEMERMLRAALKESRDVMN 341

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
             D    L    D  G IL  N  +       G    + IG+  ++FK  I      +  
Sbjct: 342 ALDESTILS-IADPEGRILEVNERF---CAITGYRADELIGKDHRMFKSGIHPPEFFADL 397

Query: 258 LEKNFCETVSTLE----HGNNKSYKIVRVLNSF-GEAG-------IAIDVSKEITVNDQL 305
            +      +   E      + + + +   +  F G+ G       +  D++      +QL
Sbjct: 398 WQTIKAGRIWRNEICNRAKDGRLFWVDTTIVPFIGDDGKPERYLAVRFDITARKQSEEQL 457

Query: 306 T----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                    ++  ++  I + ++   ++  N S   +  +    L    S D   + +  
Sbjct: 458 RASETRYRSVITAMSEGIVVMNRAGEIETCNASAERILGLSRDQLIGRTSFDPRWQAIHE 517

Query: 362 ANKLPEQLNWKTWKENI---FSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG---G 411
                    +   +  I    +  ++          P+G+   + + S P    +G    
Sbjct: 518 DG-----SPFPGEEHPIMVSLTTGRALNDVIMGIRKPSGELTWLSINSQPLCDEQGNVYA 572

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +  F ++T +   E +      +     +   +GV V  P+ R   SN  FR +W   +
Sbjct: 573 AVASFHDITARRLAEQELRFQKTLLECQTEASPDGVLVVSPERRCLYSNRRFREMWNLSD 632

Query: 472 N---RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +        +A  C      ++  +L+A       +   S +  +EL      E 
Sbjct: 633 REVDHVMCTCMESLLAQVCDPERVRNEIEELYA-------NPSLSGKAEIELKDGRTFER 685

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              P+ +A+              ER            + +KN FV  VS+ELR+PLT+I 
Sbjct: 686 YSAPVISAEGEYYGRVWFFRDVTERR---------AIERMKNEFVAVVSHELRTPLTSIR 736

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL    +G L  + +  ++    +S  L+ L+NDILD+  +++G M   +  +VL+
Sbjct: 737 GSLGLLAGGVVGELPPRAASMIDIALKNSERLIRLINDILDIEKIESGKMVFKFQPVVLD 796

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +L+ +  ++      + ++ I++ +         D  R+ Q+ + ++SNA+ FS  G  V
Sbjct: 797 ELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKFSPPGGKV 856

Query: 709 ILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +   R+  G    +V ++G  IP +    +F +F        RR  G GLGLSI  + +
Sbjct: 857 EVAIGREPRGRIRITVTDHGPGIPVEFRDRIFQKFAQADSSNTRRQGGTGLGLSISRAIV 916

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             HGG +   ++    TT    +
Sbjct: 917 ERHGGQIGFVTASGVGTTFYVDL 939


>gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1209

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 144/803 (17%), Positives = 297/803 (36%), Gaps = 72/803 (8%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           ++ F  +A + L  +   + ++R     A++  E    LS +  + +    ++T+ +   
Sbjct: 171 LSQFSILATIFLLVMASGLFVLRPYTRRARREAEQLRMLS-LVARHTDNAVIITDRDGR- 228

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF-- 141
           I W  +  T  I G     +   +   + L            ++ +A +     G+S   
Sbjct: 229 IEWVNEGFT-RISGYTLDEVR-GRKPGEFLQ-GPETDPATVARIRQALD----NGESVKA 281

Query: 142 DLVAETQNDCA----IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           ++V  T+        + I          +R ++++   ++  E     +           
Sbjct: 282 EIVNYTKQGRPYWLALNISPVYDDQHNLIRFIAIESDITQQKEMERMLRAALKESRDVMN 341

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
             D    L    D  G IL  N  +       G    + IG+  ++FK  I      +  
Sbjct: 342 ALDESTILS-IADPEGRILEVNERF---CAITGYRADELIGKDHRMFKSGIHPPEFFADL 397

Query: 258 LEKNFCETVSTLE----HGNNKSYKIVRVLNSF-GEAG-------IAIDVSKEITVNDQL 305
            +      +   E      + + + +   +  F G+ G       +  D++      +QL
Sbjct: 398 WQTIKAGRIWRNEICNRAKDGRLFWVDTTIVPFIGDDGKPERYLAVRFDITARKQSEEQL 457

Query: 306 T----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                    ++  ++  I + ++   ++  N S   +  +    L    S D   + +  
Sbjct: 458 RASETRYRSVITAMSEGIVVMNRAGEIETCNASAERILGLSRDQLIGRTSFDPRWQAIHE 517

Query: 362 ANKLPEQLNWKTWKENI---FSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG---G 411
                    +   +  I    +  ++          P+G+   + + S P    +G    
Sbjct: 518 DG-----SPFPGEEHPIMVSLTTGRALNDVIMGIRKPSGELTWLSINSQPLCDEQGNVYA 572

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +  F ++T +   E +      +     +   +GV V  P+ R   SN  FR +W   +
Sbjct: 573 AVASFHDITARRLAEQELRFQKTLLECQTEASPDGVLVVSPERRCLYSNRRFREMWNLSD 632

Query: 472 N---RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +        +A  C      ++  +L+A       +   S +  +EL      E 
Sbjct: 633 REVDHVMCTCMESLLAQVCDPERVRNEIEELYA-------NPSLSGKAEIELKDGRTFER 685

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              P+ +A+              ER            + +KN FV  VS+ELR+PLT+I 
Sbjct: 686 YSAPVISAEGEYYGRVWFFRDVTERR---------AIERMKNEFVAVVSHELRTPLTSIR 736

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL    +G L  + +  ++    +S  L+ L+NDILD+  +++G M   +  +VL+
Sbjct: 737 GSLGLLAGGVVGELPPRAASMIDIALKNSERLIRLINDILDIEKIESGKMVFKFQPVVLD 796

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +L+ +  ++      + ++ I++ +         D  R+ Q+ + ++SNA+ FS  G  V
Sbjct: 797 ELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKFSPPGGKV 856

Query: 709 ILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +   R+  G    +V ++G  IP +    +F +F        RR  G GLGLSI  + +
Sbjct: 857 EVAIGREPRGRIRITVTDHGPGIPVEFRDRIFQKFAQADSSNTRRQGGTGLGLSISRAIV 916

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             HGG +   ++    TT    +
Sbjct: 917 ERHGGQIGFVTASGVGTTFYVDL 939


>gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1013

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 127/649 (19%), Positives = 243/649 (37%), Gaps = 61/649 (9%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           +LA  T   + L      F+   D    + W +D  G  ++ N  ++   +   +  Q  
Sbjct: 82  DLAARTQAEESLRESEERFRSFMDHSPAIAWMKDDQGRHVYVNRVFEHRFQM--VSGQWL 139

Query: 237 IGESRKLFKEEIKKR------MISSSALEKNFCETVSTLEHGNNKS----YKIVRVLNSF 286
              + +LF EE+ +R      MI +  L K F E     +          +         
Sbjct: 140 GRTNFELFPEEVARRFQTHDQMILADGLPKEFVEVAPDPDGTQRDWWTFKFPFRGPAGRR 199

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA---IFDQNRYL--QFHNRSFVELWEI 341
              G+AID++    +   L  + E L  L +  A   I+D +        + +   ++ +
Sbjct: 200 YVGGVAIDITDRKRMEAALLVSEERLR-LALGAAQAGIWDWDIRTNAVQWSDNVSTIFGL 258

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNW--KTWKENIFSVYKSSETHKDTWHLPNGQT 399
                    + +  L     A   P+ L+   +  +++I +  +    H+  W  P+G  
Sbjct: 259 SRETFVG--TYEAYL-----ALVDPQDLDRLLQAIRQSIQANVEYQIEHRILW--PDGTV 309

Query: 400 LHVIVT----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
             +        +  G     +    ++T + +++ K           +DH    + +   
Sbjct: 310 HWLACRGDVLRDADGTPVRMVGTVLDVTARKEMDLKLANSEAQLRAILDHSPALIFLKDR 369

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIR-------NIAATCSRYYNESDGWDLFAAIIT 505
           +GR    N  F   +      +   T           +  T  R   E+     F     
Sbjct: 370 EGRYLDVNRQFERAFNLSREAILGKTDTELFSPKQAAVFQTNDRLVLEAKRPLRFEETAD 429

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             D  R S+     LL    + Y++             ++TD  RAE AL    +   +A
Sbjct: 430 YHDGPRTSIVFKFPLLDRDRMLYAV--------GGVATDITDRKRAEEALALARDQAMEA 481

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             +K+ F+  +S+E+R+P+  +IG T+LL  S   +L  +Q +  E +  S   LL ++N
Sbjct: 482 ARLKSEFLATMSHEIRTPMNGVIGMTNLLLES---ALTPEQRECAEVVRNSGDHLLMIIN 538

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG + L         ++++    IA +  +  + +  + D  +  +   D 
Sbjct: 539 DILDFSKIEAGRLTLETIDFDFRGMIDDTLDLIAEQARQKGLDLVGLIDASVPSAVRGDP 598

Query: 685 QRLLQIFSKILSNAMDFSSKGSTV-ILKAARD-NGDFIFS--VKNNGSSIPEDMCKSVFN 740
            RL Q+   +L NA+ F+ +G  V  +  A+D     +    V + G  I  +    +F 
Sbjct: 599 GRLRQVLINLLGNAIKFTDRGEVVLRMTVAQDAQSHVVLRGDVTDTGIGISPEGRNKLFQ 658

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            F        RR  G GLGL+I +    L  G + + S+    +     
Sbjct: 659 TFSQVDASTTRRYGGTGLGLAICKRLTELMQGEIGMESAPGKGSRFWFT 707



 Score = 45.3 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 84/261 (32%), Gaps = 27/261 (10%)

Query: 70  SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSK 129
            +    L         WD +    +    +     + + +T + ++E +L       L +
Sbjct: 223 ERLRLALGAAQAGIWDWDIRTNAVQWSDNVSTIFGLSR-ETFVGTYEAYLALVDPQDLDR 281

Query: 130 ATEKLRKEGQSFDLVAETQ-NDCAIKIEGRVSGSCA---FLRILS-----LDGIYSELAE 180
             + +R+  Q+     E Q     +  +G V         LR        + G   ++  
Sbjct: 282 LLQAIRQSIQA---NVEYQIEHRILWPDGTVHWLACRGDVLRDADGTPVRMVGTVLDVTA 338

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                 KL+N  +  + + D    L++ +D+ G  L  N  +++      +  +  +G++
Sbjct: 339 RKEMDLKLANSEAQLRAILDHSPALIFLKDREGRYLDVNRQFER---AFNLSREAILGKT 395

Query: 241 RKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRVLN------SFGEA 289
                   +  +  +        ++      +   H   ++  + +          +   
Sbjct: 396 DTELFSPKQAAVFQTNDRLVLEAKRPLRFEETADYHDGPRTSIVFKFPLLDRDRMLYAVG 455

Query: 290 GIAIDVSKEITVNDQLTHTYE 310
           G+A D++      + L    +
Sbjct: 456 GVATDITDRKRAEEALALARD 476


>gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 968

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 133/666 (19%), Positives = 256/666 (38%), Gaps = 62/666 (9%)

Query: 157 GRVSGSCAFLRILS--LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           G V G  A + I+   ++ + +EL+ +  + + L +      +L + L         +G 
Sbjct: 183 GAVLGLLAAVAIIMAYMEALQAELSRSEKRFRSLFHGNKALFLLIEPL---------SGK 233

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV----STLE 270
           I     +     +  G   ++  G +         + + S  AL  +  +        L+
Sbjct: 234 IT---DASAGAVDFYGYSLEELKGMNISQINMLSPEEIASMRALAMSGYKQQFIFPHKLK 290

Query: 271 HGNNKSYKIVRVLNSFGE----AGIAIDVSKE----ITVNDQLTHTYEILHNLTVAIAIF 322
            G+ K+ +++      G       I  DV+        + +       ++ N   AI + 
Sbjct: 291 TGDVKTVEVISTPVESGGKELLFSIVQDVTARQKALEDLEESRERLRAVVENAAAAIYLA 350

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D++  L   N +  +               +ELL             N   + + +    
Sbjct: 351 DESGRLVEVNAAAEQQTGY---------MREELLAMAIPDVDANSSKNDPAFFQEVMQSA 401

Query: 383 KSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
                     H  +G    V V +     +     + +  +LT + D E K     +   
Sbjct: 402 TGMTFESRHRH-KDGTIFPVEVRAAKLELHSVPHVLGIVSDLTSRKDTERKLAEANRTLA 460

Query: 438 ETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
             +D +   V V     R +   N A +     +          R+ +  C     E   
Sbjct: 461 AVLDGIPALVNVVDVSTREVLFMNRALKEALGRDGVGGVCHAIFRDKSCVCENCPIERMS 520

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERA 554
            +       S  ++R  + G  +L  D +L     P  + +T+   +  ++    +AE A
Sbjct: 521 ANTEGEANASVWEDRNPISGRWQLNHDRIL-----PWFDGKTVRVQISLDIGQRKQAEEA 575

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A++ K+ F+ ++S+E+R+PL  I+G   LLKT+     N +Q +Y+    
Sbjct: 576 LKQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTT---DPNDEQKEYLLGAI 632

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++DILD++ ++AG M++  S   +  + + + +    +     + ++   D
Sbjct: 633 RSTNRLTRLLSDILDISRIEAGKMQIVESEFDIKMIWDSISELFDMEARGKGLLLEFRWD 692

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNG 727
             L    V D  RL QI   ++ NA+ F+ KG  + +      +++  +   + +V + G
Sbjct: 693 NILPMLLVGDEARLRQILFNLVGNAIKFTEKG-KIRIDASLLPRSSDSSVRVLVTVSDTG 751

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  K +F  FV       RR  G GLGLSIV   + L  G +SI S+    TT  
Sbjct: 752 IGISEEQLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGTTFY 811

Query: 786 CRIPSK 791
             +P K
Sbjct: 812 LSLPFK 817


>gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 996

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 128/631 (20%), Positives = 251/631 (39%), Gaps = 49/631 (7%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
             K+  + + + K   +S    +   D  G + +AN +     E                
Sbjct: 388 AYKEKEDTLHLMKNTLESSINAIAISDLDGYLTYANSASLDMWEYNKEEILGKHITEFWQ 447

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--------SFGEAGIAIDV 295
           +KE                 E  +  +HGN   + +  ++N            AG  +D+
Sbjct: 448 YKENAINVYHYLHENGSWKSEGKAKTKHGN--VFDVYSLINLVNDESGKPVAIAGSFVDI 505

Query: 296 SKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAF 345
           +K  +  ++L  + + L     N  + I + D+N      N +   +        + +  
Sbjct: 506 TKRKSYEEKLKKSEQQLRNYIDNSPIGIFVIDKNGNYVDVNPAACHIIGYTKDELLSMNI 565

Query: 346 LATNPSN-----DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +  +P N      ++ E L    K+  +L + T  +++                   +  
Sbjct: 566 IDLHPDNAHELAGQIFEELLENGKVSAELPFITKNDSL-------------------RYW 606

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +          I    ++T +  +E +     +      +  ++ +     DG I   N
Sbjct: 607 ILDAVKLLEDKYIGFTTDITDRKRIEEELRESEERFRTLTEQAADAIIAHDFDGNIVYVN 666

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                     +  L     I +I+A  + Y  ++  W+  +    S+  E K  +     
Sbjct: 667 NLACENLGYSKEELLSMN-IADISAYINSYDPKTVYWEKLSPS-DSYLVETKLRRKDGSY 724

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
               V    I     +  +     +T   +AE +L         A + K+  + +VS+EL
Sbjct: 725 YPAEVKLTRIDLKGRSVILGFVREITIRKQAEESLINSKLEAEAASQAKSELLANVSHEL 784

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT+IIGF+D+L   KLG LN  Q  Y+  +  S   LL+L+ DILDL+ +++G  +L
Sbjct: 785 RTPLTSIIGFSDILLKGKLGDLNESQKTYLSKVHRSGKHLLDLITDILDLSKIESGKHEL 844

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +   + +  L+ ++K++I     +  + I +  +  +    AD+ +L QI   ++ NA+ 
Sbjct: 845 HCEKVSIPQLMKDLKENIYPFASQKGLEINIDINRSIEYIYADKIKLRQILYNLVYNAVK 904

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+ +GS V +K   ++ D +FSV + G  IP D    +F+ F         +  G GLGL
Sbjct: 905 FTEQGS-VTVKLDWNDNDMLFSVIDTGIGIPADKQDEIFDSFKQLDSGASRRYSGTGLGL 963

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++VE  + +HGG + + S +   +  +  IP
Sbjct: 964 ALVERLVEMHGGKIWVESEEREGSRFSFIIP 994



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 129/384 (33%), Gaps = 44/384 (11%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ-- 234
           ++ E     K L+     F+ + ++    +   ++ G+I++AN + +          +  
Sbjct: 252 DITERKKTQKNLNKEKDFFEKVAETSPVCITKVNKNGNIVYANSAAENVLGLSKSEIEGR 311

Query: 235 --KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH------GNNKSYKIVRVL--- 283
               +      FK  +         L + + + V  + H      G  K   I       
Sbjct: 312 TYDNVKWKITDFKGNLFPETELPFELVQKYQKPVYDVRHAIEWPNGQRKLLSINAAPIFD 371

Query: 284 --NSFGEAGIAI-DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
              +FG     I D++      D L      L +   AIAI D + YL + N + +++WE
Sbjct: 372 DNGNFGSIIATIEDITAYKEKEDTLHLMKNTLESSINAIAISDLDGYLTYANSASLDMWE 431

Query: 341 IDLAFLATNPSNDELLEFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            +   +       E  ++  +A    + L E  +WK       S  K+   H + +    
Sbjct: 432 YNKEEILGKH-ITEFWQYKENAINVYHYLHENGSWK-------SEGKAKTKHGNVF---- 479

Query: 397 GQTLHVIVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
                +I   N   G        F ++T +   E K     +     ID+   G+ V   
Sbjct: 480 -DVYSLINLVNDESGKPVAIAGSFVDITKRKSYEEKLKKSEQQLRNYIDNSPIGIFVIDK 538

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIR-------NIAATCSRYYNESDGWDLFAAIIT 505
           +G     NPA   +    ++ L     I         +A        E+         IT
Sbjct: 539 NGNYVDVNPAACHIIGYTKDELLSMNIIDLHPDNAHELAGQIFEELLENGKVSAELPFIT 598

Query: 506 SFDDERKSLQGTLELLSDSVLEYS 529
             D  R  +   ++LL D  + ++
Sbjct: 599 KNDSLRYWILDAVKLLEDKYIGFT 622



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 99/301 (32%), Gaps = 25/301 (8%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D++ +   +D+L     I  N+ + I + D  R +   N+S  EL+    +         
Sbjct: 116 DITSQRKTDDELKT---IYENVPMVIMMVDSERRIFKVNKS-AELFSGTTSDEMVGLRGG 171

Query: 354 ELLEFLRSANKLPEQLNWKTW------KENIFSVYKSSETHKDTW-HLP---NGQTLHV- 402
           E L  L ++   P+   +  +      K  +   +++   H +    LP   +G   ++ 
Sbjct: 172 EALRCL-NSLSNPDGCGFGQYCQECKVKNTVIDTFETGNNHYNVETSLPFMIDGDVKYLT 230

Query: 403 ------IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
                 ++ ++ +   I    ++T +   +   N       +  +     +     +G I
Sbjct: 231 FLISTSLINNDEKPKVIVSLLDITERKKTQKNLNKEKDFFEKVAETSPVCITKVNKNGNI 290

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
             +N A  ++    ++ +   T+            N     +L   ++  +      ++ 
Sbjct: 291 VYANSAAENVLGLSKSEIEGRTYDNVKWKITDFKGNLFPETELPFELVQKYQKPVYDVRH 350

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +E  +      SI   P         N    +     +T   E       +KN+    +
Sbjct: 351 AIEWPNGQRKLLSINAAP---IFDDNGNFGSIIATIEDITAYKEKEDTLHLMKNTLESSI 407

Query: 577 S 577
           +
Sbjct: 408 N 408



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 94/297 (31%), Gaps = 32/297 (10%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-- 226
           +++ G + ++ +     +KL       +   D+    ++  D+ G+ +  N +       
Sbjct: 496 VAIAGSFVDITKRKSYEEKLKKSEQQLRNYIDNSPIGIFVIDKNGNYVDVNPAACHIIGY 555

Query: 227 ---ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV- 282
              E   +       ++      +I + ++ +          +  +   ++  Y I+   
Sbjct: 556 TKDELLSMNIIDLHPDNAHELAGQIFEELLENGK----VSAELPFITKNDSLRYWILDAV 611

Query: 283 -LNSFGEAGIAIDVSKEI---TVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVE 337
            L      G   D++          +    +  L      AI   D +  + + N    E
Sbjct: 612 KLLEDKYIGFTTDITDRKRIEEELRESEERFRTLTEQAADAIIAHDFDGNIVYVNNLACE 671

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
                   L +  +  ++  ++   +  P+ + W+    +   + ++    KD  + P  
Sbjct: 672 NLGYSKEELLS-MNIADISAYI--NSYDPKTVYWEKLSPSDSYLVETKLRRKDGSYYP-- 726

Query: 398 QTLHVIVTSNPRGG---TIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLS 444
               V +T     G    +     +T++   E              + + E + ++S
Sbjct: 727 --AEVKLTRIDLKGRSVILGFVREITIRKQAEESLINSKLEAEAASQAKSELLANVS 781


>gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 761

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 118/510 (23%), Positives = 221/510 (43%), Gaps = 28/510 (5%)

Query: 294 DVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEID-LAFLAT 348
           DV+    +  +LT + E    +       I I   +  +   N +   ++       L  
Sbjct: 251 DVTASKKIERELTESEEKFKQVVELSIDGIIIGANSGKIVDCNEAACRIFGYGKEEMLEL 310

Query: 349 NPSNDELLEFLRS-------ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           N  N    +F++S          + E    ++  +     + ++E    T+ L +   L 
Sbjct: 311 NVDNILREDFMQSIPEIITTGKAVSENKTIESINKRKDGTFFTAEIATRTFKLGDEDRLI 370

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           V V             ++T +   E    +  +     +++  +G+ +   +G +  +N 
Sbjct: 371 VYVR------------DITERKKAERDLKSSEENFRALVNNTLDGIIILNFEGEVIAANA 418

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A   ++   E     GT+I    A  S      D  ++       +    K++    E  
Sbjct: 419 AVGKMFNV-ELEKITGTNIAKYLAPESVPVAIRDQINVLNN-QGGYLSVYKAISSMGEHF 476

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               L   II       ++   ++T   +AE AL     A   A+  K+ F+ ++S+EL+
Sbjct: 477 WIEGLGTKIIYQNQPANIVVIRDITVRKKAEEALINAKTAAEVANRTKSEFLTNMSHELK 536

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL +IIGF+DLLK    G LN KQS+YV++IS+S   LL ++NDILDL+  ++G   LN
Sbjct: 537 TPLNSIIGFSDLLKEEIAGPLNEKQSRYVQFISSSGKNLLEIINDILDLSKAESGEEDLN 596

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +++ +N+V   +  +  E NI +   S+ +     AD  +  QI   +LSNA+ F
Sbjct: 597 VEKFSVDESINKVISVVLPQAQEKNIILNYQSENRTLWITADEGKFRQIMENLLSNAIKF 656

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLS 759
           +  G ++ +   ++       VK+ G  IPED  + +F  F+           G GLGL+
Sbjct: 657 TPAGGSIDVTLKQEGLLVTIEVKDTGIGIPEDSFEKIFKPFIQIDSSLSRNFEGTGLGLT 716

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +V+ ++ +HGG++ + S     ++    +P
Sbjct: 717 LVKKYVEMHGGNIYVESKIGEGSSFRFELP 746


>gi|260574258|ref|ZP_05842263.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259023724|gb|EEW27015.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 854

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 105/569 (18%), Positives = 217/569 (38%), Gaps = 42/569 (7%)

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
           A  E   L    +  +++    + K+       L+  NN+    +   ++          
Sbjct: 30  AANEKLALHARSLSDQIVEQRQVVKSALSEAEVLKGQNNRFMHDLERAHTAAVVA----- 84

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                        ++ ++ +    A+FD N+ L   NR++  L   +   L    S + +
Sbjct: 85  ---------ERRLWDSINTIRDGFAVFDTNKKLVTANRAY--LASFEGHKLVPGISYEAI 133

Query: 356 LEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L        +     N   W   + + +             NG  + ++   +  G  + 
Sbjct: 134 LRLGAETGLVDIGGRNLDDWCAEMLARWDDDPIEPVVLQFANGTWVRLVDHRSRDGDMVC 193

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  N+T Q+ +              I+ + +G  +F  + R+   N  +R L+      +
Sbjct: 194 LALNITEQMRI-----------WAAIEAIPDGFVLFDREDRLMTCNQRYRDLYPESAEAM 242

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIP 532
            PG    +I          +D   +    +      R  KS Q   ++     L      
Sbjct: 243 VPGASYESILRYGLEQGAYADALGVEEDWLKERLARRRLKSDQFEQQMADGRWLRVIEQE 302

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            P+   +   V+VT +   +  L     A   A+  K++F+ ++S+E+R+P+  ++G  +
Sbjct: 303 TPDGGHVGLRVDVTAAREQQTLLETARMAAEAANRAKSAFLANMSHEIRTPMNGVVGMAE 362

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +   +L  +Q  + + I +S   LL ++NDILD + ++A  + L+     L   ++
Sbjct: 363 LLCDT---NLTEEQRLFADTIRSSGEALLVIINDILDYSKIEAERLTLHPEPFDLERTIH 419

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS----T 707
           EV   +  +     + + +  D  L + ++ D  RL Q+ + ++ NA+ F+  G      
Sbjct: 420 EVTMLLQPRARAKGLDLMIDFDMFLPTRYIGDAGRLRQVLTNLMGNAVKFTETGHVLVRV 479

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           V ++A   +     +V++ G  I  +    +F  F        R   G GLGL+I +  +
Sbjct: 480 VGIEAEPGSQQLHITVEDTGIGIAPEHLDHIFGEFNQVESETNRKFEGTGLGLAITQRLV 539

Query: 766 NLHGGHVSISSSDEGVTTINCR--IPSKE 792
              GG V + S     +    R  +P  E
Sbjct: 540 ERMGGAVWVDSEPGKGSCFGFRLALPVAE 568


>gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 1207

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 140/797 (17%), Positives = 286/797 (35%), Gaps = 66/797 (8%)

Query: 28  GTIAGMLLTTIIPIILLI-RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86
             +  ++L+ +I  + LI R     A++  E    LS +  + +    ++T+     I W
Sbjct: 174 AGVVVLILSLLIAGVFLIIRPYARRARREAEQLRMLS-LVARYTDNAVIITDRTGR-IEW 231

Query: 87  DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146
             +  T  I G     +   +   DLL            +   A  +  + G+S      
Sbjct: 232 VNEGFT-RISGYTLDEVR-GEKLGDLLQ-----GPETDQETVAAISRAIRNGESIKTEIL 284

Query: 147 --TQNDCA----IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
             T+N       + I             ++++   +   E     +             D
Sbjct: 285 NYTKNGHPYWLSLDISPVYDEQHHLTHFIAIESDITHQKEMERMLRSALKESRDIMNALD 344

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE-----EIKKRMISS 255
               L    D  G IL  N  +       G    + IG+  ++FK      E    + ++
Sbjct: 345 QSTILS-IADPEGRILEVNERF---CAITGYRPDELIGKDHRIFKSGVHTPEFFADLWNT 400

Query: 256 SALEKNFCETV-STLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLT-- 306
               + +   + +  + G+        V              +  D++      +QL   
Sbjct: 401 IKAGRIWRNEICNRAKDGHLFWVDTTIVPFIGDNGQPERYLAVRFDITGRKKSEEQLRAS 460

Query: 307 --HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 ++  ++  I + +++  ++  N S   +  +    L      D   E +     
Sbjct: 461 ETRYRSVITAMSEGIVVMNKSGVIETCNTSAERILGLSYDQLVGRTGFDPRWEAIHEDG- 519

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTW---HLPNGQTLHVIVTSNPR-------GGTIW 414
                 +   +  I     +     D       P+G+ + + + S P           + 
Sbjct: 520 ----TPFPGEEHPIMVSLTTGRPQSDVVMGIRKPSGELIWISINSQPLCDEHGNVYAAVA 575

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            F ++T + + E +      +     +   +GV V  PD R   +N  FR +WK   + +
Sbjct: 576 SFHDITARRNAEQELRFQKTLLECQTEASPDGVLVVSPDRRCLYANQRFREMWKITGSPI 635

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T   ++    ++  +     +    +  + +   K+    +EL      E    P+ 
Sbjct: 636 EQATCAASMELMLAQVCDPERVRNEIEELYANPNLTGKT---EIELKDGRTFERYSAPVI 692

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +++              ER            + +KN FV  VS+ELR+PLT+I G   L+
Sbjct: 693 SSEGDYYGRVWFFRDVTERR---------AIERMKNEFVAVVSHELRTPLTSIRGSLGLI 743

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G L  + +  ++    +S  L+ L+NDILD+  +++G M      +VL++L+ + 
Sbjct: 744 AGGVAGELPPRAAAMIDIALKNSERLVRLINDILDIEKIESGKMVFKMQPVVLDELVRQT 803

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            ++      + N++I++ +         D  R+ Q+ + ++SNA+ FS  G  V +   R
Sbjct: 804 IEANRGFGQQYNVQIELTATLPGVQVYVDPDRMTQVITNLISNAVKFSPPGCKVEVAIGR 863

Query: 715 D-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
           +  G    +V ++G  IP +    +F +F        R   G GLGLSI  + +  HGG 
Sbjct: 864 EPQGRVRITVTDHGPGIPPEFRDRIFQKFAQADSSNTRQQGGTGLGLSISRAIVERHGGQ 923

Query: 772 VSISSSDEGVTTINCRI 788
           +   ++    TT    +
Sbjct: 924 IGFVTATGVGTTFYVDL 940


>gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1093

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 120/656 (18%), Positives = 243/656 (37%), Gaps = 48/656 (7%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +L   GI  +++       KL    +  + L DS   L+W  +  G   + N +Y K   
Sbjct: 299 LLWWAGINLDISSLKQTEAKLRESEAQLRNLADSAPVLIWMNNAEGGCEFVNKAYLKFFG 358

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVST-LEHGNNKSYKIVRVL 283
            E +   +  G S  L  ++ +  + +   +   +K F          G  +        
Sbjct: 359 -ESLEEIQGFGWSIHLHPDDAQPYLSAYEQAFNEQKPFRAQARIKRADGQYRWLDSRATP 417

Query: 284 NS------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNR 333
                    G  G + D+S+    ++ L  + +    L   + +     D+ ++ +F N 
Sbjct: 418 QFSSTGQFLGYIGSSSDISEIKEASEALRESEQRFKLLADNVPVLIWMDDEFQHRRFVNA 477

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            +++   I    L    ++             PE       K      +KS         
Sbjct: 478 RYLQFAGISPEMLVQGWTD----------LLHPEDAQQYLLKYKQAIAHKSEYRAVVRLR 527

Query: 394 LPNG--QTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
             +G  +   VI      G    G +    ++T +   E       +      + + + V
Sbjct: 528 RHDGVYRWFEVIGLPRFEGDSFVGYLGCKLDITERKQAEEALQQREQRFSNLFNGMEDWV 587

Query: 448 AVF-----GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
            V+        G++   N             L     +++I    S    E+    L +A
Sbjct: 588 LVYHLTEEDQPGKLIEVNEQASKKLGYSREELLS-MSVKDIINPAS-VNPEASLKKLQSA 645

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                +    + +G    +  S   +++  LP  Q +   +     +  ER      E  
Sbjct: 646 KHIVVESVHITKEGQEIPVEVSATLFTLNGLPTVQAICRDITERKQIEQEREQLLIREQA 705

Query: 563 RKA-----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            +      + IK+ F+  +S+ELRSPL  I+G+  +LK  +L    ++++  +  I  ++
Sbjct: 706 AREAAESANRIKDEFLAVLSHELRSPLNPILGWAQMLKNYELDQPTTQKA--LCIIERNA 763

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +   L+ D+LD++ +  G + LN +++ L  ++    +++       +I ++   +  +
Sbjct: 764 RLQAELIEDLLDVSRILRGKLNLNTTSVSLVVVIEAALETVRLAAQAKSIELRTQLETPV 823

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           G  + D  RL Q+   +LSNA+ F+  G  V ++  + +G     VK+ G  I  +    
Sbjct: 824 GRVLGDAARLQQVVWNLLSNAVKFTPSGGQVEIELEQIHGGVEIRVKDTGKGITPEFLPY 883

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPS 790
           +F+ F        R   G+GLGL+I    + LHGG +   S  +    T    +P 
Sbjct: 884 IFDYFRQADSSTTRKFGGLGLGLAIARHLVELHGGKIWAESLGENQGATFIVNLPL 939



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/411 (13%), Positives = 136/411 (33%), Gaps = 43/411 (10%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
             +++       L  +  +++ + +++D+ +W  +  G  ++A+ S+             
Sbjct: 181 RNISQWKRSEAALRLNERLYRAIGETIDYGIWICEPDGRNIYASDSFLNLVGMTQEQCS- 239

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFGE- 288
             G    L  ++ +  +++    +   NF +        +   + I    V V +  GE 
Sbjct: 240 NFGWGEVLHPDDAEATIVAWQECSQSGNFWDREHRFRGIDGNWHPILARGVPVRDEKGEL 299

Query: 289 ---AGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIF--DQNRYLQFHNRSFVELWEI 341
              AGI +D+S       +L  +   L NL  +  + I+  +     +F N+++++ +  
Sbjct: 300 LWWAGINLDISSLKQTEAKLRESEAQLRNLADSAPVLIWMNNAEGGCEFVNKAYLKFFGE 359

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                    S +E+  F  S +  P+    + +  E  F+  K            +GQ  
Sbjct: 360 ---------SLEEIQGFGWSIHLHPDDAQPYLSAYEQAFNEQKPFRAQARI-KRADGQYR 409

Query: 401 HVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
            +   + P+        G I    +++   +         +      D++   + +    
Sbjct: 410 WLDSRATPQFSSTGQFLGYIGSSSDISEIKEASEALRESEQRFKLLADNVPVLIWMDDEF 469

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
              +  N  +          L  G           +Y  +      +   I    + R  
Sbjct: 470 QHRRFVNARYLQFAGISPEMLVQGWTDLLHPEDAQQYLLK------YKQAIAHKSEYRAV 523

Query: 514 LQGTLELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNE 560
           ++           E   +P          +   +++T+  +AE AL ++ +
Sbjct: 524 VRLRRHDGVYRWFEVIGLPRFEGDSFVGYLGCKLDITERKQAEEALQQREQ 574


>gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 940

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 121/665 (18%), Positives = 244/665 (36%), Gaps = 55/665 (8%)

Query: 169 LSLDGIYSELAETTLKCK-KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
             L   YS L E   + K +L      F+ +  + D  +W  D  G   + +    +   
Sbjct: 124 RRLTAAYSSLLEQYRQLKTELRKREQRFRDVERAFDEYIWELDGEGRYAYVSP---QIHS 180

Query: 228 TEGIVFQKAIG---------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
             G+  +  IG         +  + F    ++    +  +        S    G  +   
Sbjct: 181 ILGVAPEALIGTPVWQYVYPDDVERFLNIFRQAAAENKLVRNLEYRRRSA--SGELRWLS 238

Query: 279 IVRVL------NSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
              V          G  G  +D++     E  + D   H   I+  +   + + +++  +
Sbjct: 239 ANGVPVFNEQGTLIGFRGATLDITKQKAAEAALRDSEEHYRSIVTAIAEGMVVQERDGRI 298

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NR    +  +    L    S D     +R          +   +       ++ +  
Sbjct: 299 VSFNRKAEAILGLTADQLMGRTSCDPRWRAVREDG-----SPFPGEEHPAMVSLRTGKPC 353

Query: 389 KDTW---HLPNGQTLHVIVTSNPRGG--------TIWMFENLTVQVDLETKYNTLVKVQG 437
            +     + PNG+   ++V + P            +  F ++T +  +E       +   
Sbjct: 354 HNVVMGVYKPNGEMCWILVNAEPLFRPGESEPFRVVATFTDITERRRIEQTLLETREQLK 413

Query: 438 ETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              + L+     +     R+   +PA   L+               + AT          
Sbjct: 414 NLFNSLNIVFWSYDVTQRRLLQLSPACEGLFGVPAQAFFDHPDTW-MQATHPDDLPRLRR 472

Query: 497 WDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                 +  +  DE + ++  G L  +S  V+  +       +     +++T+  + +  
Sbjct: 473 ISKRVLVGKAIQDEFRIIRNNGDLRWVSGHVIPVADSSGKVVRLDGMLMDITEKKQVDME 532

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L        +A   K+SF+  +S+E+R+P+  IIG  +LL  ++   L S+Q  Y + + 
Sbjct: 533 LRIAKVRAEEASLAKSSFLAMMSHEIRTPMNGIIGMNELLLGTR---LTSEQLDYAQAVQ 589

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVIS 673
            S+ +LL ++NDILD + V+AG M+L         +++ V + +  K  E  + I   I+
Sbjct: 590 ESAELLLTVINDILDYSKVEAGKMELESIDFDPVPVVDGVARLLQGKAREKGLTISTFIA 649

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSS 729
           D     F  D  RL Q+   ++SNA+ F+ +G+  + +    D G      F V + G  
Sbjct: 650 DEARFLFQGDPGRLRQVLLNLVSNAVKFTERGTIDIRVFPVSDTGSQVTIRFEVIDTGIG 709

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  ++   +F  F         +  G GLGL+I  + + L GG + + S     +T    
Sbjct: 710 IAPEIRDCLFQPFSQGNTSMTRKYGGTGLGLAISRNLVELMGGKIGVQSKPGEGSTFWFT 769

Query: 788 IPSKE 792
           +P ++
Sbjct: 770 LPVRK 774



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/421 (15%), Positives = 130/421 (30%), Gaps = 44/421 (10%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
            S     F  L       +   D    I + N S ++ T           G+      E 
Sbjct: 4   ASGSSETFLSLVRQFPLPLAVLDPDRIIRFLNPSAERLTGWSSQDVAGRRGDDFFHLDET 63

Query: 248 IKK-------RMISSSALEKNFCETVSTLE-HGNN-KSYKIVRVLNSFGEAGIAIDVSKE 298
                     R+++      + C     L  +G    ++ +V      GE G        
Sbjct: 64  DAAGLSAHCGRIVTPEGTSLSLCVQAHGLASNGERADAFLVVLKAVPVGEHGSPSCHGAC 123

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLA--FLATNPSNDEL 355
             +    +   E    L     +  + +  +   R+F E +WE+D    +   +P    +
Sbjct: 124 RRLTAAYSSLLEQYRQLKT--ELRKREQRFRDVERAFDEYIWELDGEGRYAYVSPQIHSI 181

Query: 356 LEFLRSANKLPE--QLNWKTWKENIFSVYKSSETH-------KDTWHLPNGQTLHVIVTS 406
           L     A       Q  +    E   ++++ +          +      +G+   +    
Sbjct: 182 LGVAPEALIGTPVWQYVYPDDVERFLNIFRQAAAENKLVRNLEYRRRSASGELRWLSANG 241

Query: 407 NP---RGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            P     GT+  F     ++T Q   E       +     +  ++EG+ V   DGRI   
Sbjct: 242 VPVFNEQGTLIGFRGATLDITKQKAAEAALRDSEEHYRSIVTAIAEGMVVQERDGRIVSF 301

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI-ITSFDDERKSLQGTL 518
           N    ++     ++L   T             +   G +  A + + +       + G  
Sbjct: 302 NRKAEAILGLTADQLMGRTSCDPRWRAVREDGSPFPGEEHPAMVSLRTGKPCHNVVMGVY 361

Query: 519 ELLSDS-VLEYSIIPLPNA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +   +   +  +  PL         + + TF ++T+  R E+ L      L   +++KN 
Sbjct: 362 KPNGEMCWILVNAEPLFRPGESEPFRVVATFTDITERRRIEQTL------LETREQLKNL 415

Query: 572 F 572
           F
Sbjct: 416 F 416


>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1149

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 123/587 (20%), Positives = 235/587 (40%), Gaps = 39/587 (6%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
            +  E           E  +   E +    +SS  L   + E    +  G  K      +
Sbjct: 283 AEVMEDASAAMGAVCIEDMERVYESL---AVSSQNLTPLYIEYRVNMPSGRKKWVATKAI 339

Query: 283 LNSFG-----EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                       GI  D++      ++L      +   +  + + +++    + N SF  
Sbjct: 340 PEKRSGLRVVWYGIFEDITMRKESEERLRMVSAAVEASSDFVLMVNRDGDALYRNNSFTN 399

Query: 338 LWEIDLAFLATNPSN--DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
           +       L            E L     L E L +  W+ ++  + +S       +   
Sbjct: 400 IVGYQTIDLLNEKGGVKALFGEKLVYDKILQETLEYGHWQGDVQVMTESGRQLDIYF--- 456

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLT---VQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
             +++ V          +    ++T    + +L  +YN+++K Q E     ++G+ V   
Sbjct: 457 --RSVSVKDEKGRVSALVVTGTDVTHNKRRQNLLKRYNSVLKAQSEA---ATDGILVVNE 511

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            G +   N  F  +W    N +  G     I    S+   +S+    F   +   +DE +
Sbjct: 512 RGIVSNFNRRFCKIWGLSTNLMDVGRP-EKIWNVASKQVADSEA--FFERAMKISEDETE 568

Query: 513 SLQGTLELLSDSVLEYSIIPL-----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           + +  L+       E + IP+      +   +  F  VT+  R+E  L        +A+ 
Sbjct: 569 TFKDVLDFEDGRTFERTSIPISSPLGESYGRVWFFHEVTEQKRSEERLRATMREAEEANR 628

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+ ++S+E+R+P+  IIG T LL  +   +L ++Q  YV+ I ASS  LL ++NDI
Sbjct: 629 AKSYFLANMSHEIRTPMNGIIGMTGLLSET---TLENEQHDYVDTIRASSEALLVVINDI 685

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           LD + +++G +++      L D + E   ++A +  E  + +  +   ++  S + D  R
Sbjct: 686 LDFSKIESGKLEIENIMFDLRDCMEEAIDTLAIQATEKGLDVSYVFGKEVPGSLLGDPTR 745

Query: 687 LLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           L Q+   ++ NA+ F++KG  V+         D+    F V + G  IP D    +F  F
Sbjct: 746 LRQVIVNLIGNAVKFTAKGGVVVRVDPFHIKDDDVILHFKVTDTGIGIPADRIDRLFGSF 805

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                   R   G GLGL+I ++ + L GG + + S D   +T +  
Sbjct: 806 SQVDASTTRKYGGTGLGLAISKNLVELMGGSMWVESEDGEGSTFHFT 852



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 65/425 (15%), Positives = 139/425 (32%), Gaps = 57/425 (13%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW-------DGKDETPEIIGQLHQR 102
               +     S L +  ++L +  +       +  V+        G+   P I  ++ + 
Sbjct: 224 RDVTEEVRVQSKLEKSANELDRLSA------QVPGVYFHLSMNESGEPSFPYISEKVKEL 277

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRV--- 159
           + +   +         ++       +   E + +  +S  L   +QN   + IE RV   
Sbjct: 278 LGVEAAEV--------MEDASAAMGAVCIEDMERVYES--LAVSSQNLTPLYIEYRVNMP 327

Query: 160 SGSCAFLRILSLDGIYSELA-------ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
           SG   ++   ++    S L        E     K+    + +     ++    V   ++ 
Sbjct: 328 SGRKKWVATKAIPEKRSGLRVVWYGIFEDITMRKESEERLRMVSAAVEASSDFVLMVNRD 387

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
           GD L+ N S+      + I      G  + LF E++    I    LE    +    +   
Sbjct: 388 GDALYRNNSFTNIVGYQTIDLLNEKGGVKALFGEKLVYDKILQETLEYGHWQGDVQVMTE 447

Query: 273 NNK----SYKIVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEIL----HNLTVAIA 320
           + +     ++ V V +  G     +    DV+      + L     +L       T  I 
Sbjct: 448 SGRQLDIYFRSVSVKDEKGRVSALVVTGTDVTHNKRRQNLLKRYNSVLKAQSEAATDGIL 507

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + ++   +   NR F ++W +    +                    +  + + + E    
Sbjct: 508 VVNERGIVSNFNRRFCKIWGLSTNLMDVGRPEKIW------NVASKQVADSEAFFERAMK 561

Query: 381 VYK-SSETHKDTWHLPNGQTLHVIVTS--NPRG---GTIWMFENLTVQVDLETKYNTLVK 434
           + +  +ET KD     +G+T         +P G   G +W F  +T Q   E +    ++
Sbjct: 562 ISEDETETFKDVLDFEDGRTFERTSIPISSPLGESYGRVWFFHEVTEQKRSEERLRATMR 621

Query: 435 VQGET 439
              E 
Sbjct: 622 EAEEA 626


>gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 891

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 131/587 (22%), Positives = 232/587 (39%), Gaps = 30/587 (5%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-- 280
            K  ET    F  A+        ++I   +I     E+ F   V  L +G  K  + +  
Sbjct: 290 VKPVETSIDAFMAAVHPEDTERMKQIITNVILKGIHEETFYRIV--LPNGEQKVLRSIWE 347

Query: 281 -----RVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
                         G+  DV++    E  + +       +  +  + I   +   ++   
Sbjct: 348 AEMNEHAGKPVQVVGMIQDVTEHREMEQRLRESENRYRSLFQHNPLGICAVNMEGHILSV 407

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N S  EL       L       ++L    S  +   + + +  K+     Y+S   HK+ 
Sbjct: 408 NPSLEELTGYTKDELLG----ADILIMASSEEQDKIKRHMELAKQGETQTYESEFIHKEG 463

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
             L    T   I       G   + EN+T   +   +   L       ++ +SEG+    
Sbjct: 464 ERLFIKMTNIPIFVQEEIVGCYGIIENVTPLKNYIAQIEKLSNEHSLILNAVSEGIVGLS 523

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            +G ++  NPA   ++     +   G  I  I        +  D        I S    +
Sbjct: 524 TEGHVRFMNPAAVEMFGVGSAKPLHGACIDMIRHADEIGSHFPDEQSSILQAIRSGASYQ 583

Query: 512 KSLQGTLELLSDSVL-EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                  +    S L  Y I PL +       V V      E+ +    E+  +AD  K+
Sbjct: 584 VEEAVFWKKGGSSFLASYRISPLMDNGERKGAVMVFVDRTNEKEIIRAKESAERADRAKS 643

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+P+  IIG   LL  ++   L+ +Q  Y++ I++SS  L+ ++N+ILDL
Sbjct: 644 EFLSVMSHELRTPMNGIIGMAGLLADTE---LDEEQRSYIDIITSSSGALMQILNEILDL 700

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + ++AG M L + + VL++++  V      +  E  I +K   D ++    V D  R+ Q
Sbjct: 701 SKIEAGKMSLLHESFVLDNVVGSVADLFMMQAMEKGIELKWHVDQEMPGMLVGDHVRIRQ 760

Query: 690 IFSKILSNAMDFSSKGST---VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFV 743
           +   ++SNA+ F+ +G     V  KA   + +     FSV + G  IP D    +F  F 
Sbjct: 761 VLVNLVSNAIKFTERGRVNIFVERKAYSRHKNRCLIEFSVTDTGIGIPADRQHLLFQPFS 820

Query: 744 SNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                   +  G GLGLSI ++ + L GG + + S +    T   ++
Sbjct: 821 QLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDSDEARGATFRFQL 867



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/343 (11%), Positives = 108/343 (31%), Gaps = 41/343 (11%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           +   +L     + ++    I I  +     + N +F ++   +   L        L +  
Sbjct: 3   SAARRLPLLEHMYNHAPTGIVILSKEGKCLYVNPAFCKMVGYEQEELLDIRYYHLLYKEA 62

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-------TSNPRGGT 412
           +    L E   +  W +    VYK+    K       G ++ + +        +  +   
Sbjct: 63  QDQRGLREA--YAGWLQATDQVYKTELRLKHKR----GTSVWLSLELTIFDDEATEQSYL 116

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I    ++T + D+E   +    +     ++  + ++    DG ++  +P+   L    + 
Sbjct: 117 IAYAMDITEKKDMEQVLSDNEDLYMLITENTPDVISYSTADGILQYISPSVEKLLGYTKQ 176

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +     ++        +  ++D   +      +   +R+        L    LE S   
Sbjct: 177 EMLGKKRLQFY------HVEDADYMRVHGLFKETGIMKRRVRHKDGHYL---WLEVSYRI 227

Query: 533 LPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY---ELRSPL 584
           + + Q      +    N+T+  ++E  L +               V +V +   E R   
Sbjct: 228 IRDEQGRIKRVLSIGRNITERQKSEENLAKAQRLAMFGSWD-WDLVNNVMHFSKEFR--- 283

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +I G+             S  +         +  +  ++ ++
Sbjct: 284 -SIFGYC------VKPVETSIDAFMAAVHPEDTERMKQIITNV 319



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 56/414 (13%), Positives = 120/414 (28%), Gaps = 56/414 (13%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
             +  + + + +++     +    + G  L+ N ++ K    E             L  +
Sbjct: 3   SAARRLPLLEHMYNHAPTGIVILSKEGKCLYVNPAFCKMVGYEQEELLDI--RYYHLLYK 60

Query: 247 EIKKRMISSSALEKNFCETVSTL--------EHGNNKSYKIV------RVLNSFGEAGIA 292
           E + +     A       T            + G +    +                  A
Sbjct: 61  EAQDQRGLREAYAGWLQATDQVYKTELRLKHKRGTSVWLSLELTIFDDEATEQSYLIAYA 120

Query: 293 IDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +D++++  +   L+   ++      N    I+    +  LQ+ + S  +L       +  
Sbjct: 121 MDITEKKDMEQVLSDNEDLYMLITENTPDVISYSTADGILQYISPSVEKLLGYTKQEMLG 180

Query: 349 NPSND----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                    E  +++R      E             + K    HKD  +L    +  +I 
Sbjct: 181 KKRLQFYHVEDADYMRVHGLFKE-----------TGIMKRRVRHKDGHYLWLEVSYRIIR 229

Query: 405 TSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
               R   +     N+T +   E     L K Q   +     G   +     +   +  F
Sbjct: 230 DEQGRIKRVLSIGRNITERQKSEE---NLAKAQRLAMF----GSWDWDLVNNVMHFSKEF 282

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLEL 520
           RS++      +   T I    A       E     +   I+    +E   R  L    + 
Sbjct: 283 RSIFGYCVKPVE--TSIDAFMAAVHPEDTERMKQIITNVILKGIHEETFYRIVLPNGEQK 340

Query: 521 LSDSVLEYSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           +  S+ E  +        Q +    +VT+    E+ L E        +  ++ F
Sbjct: 341 VLRSIWEAEMNEHAGKPVQVVGMIQDVTEHREMEQRLRESE------NRYRSLF 388


>gi|21228620|ref|NP_634542.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907118|gb|AAM32214.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1]
          Length = 702

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 132/642 (20%), Positives = 244/642 (38%), Gaps = 30/642 (4%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANISYK 223
             R   L      L       + L    S ++  F++   +    D     I+ AN    
Sbjct: 53  IDRF-ELKTRIKSLIRIKKNYEALQESESRYRQFFNNSPAVTLLVDPESYRIVDANDPAC 111

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE-TVSTLEHGNNKSYKI--- 279
                              +F EE  K +     LEK     +   L  G  +  ++   
Sbjct: 112 AYYGYTYEEMTAKKISDINVFSEEKNKEITRQVFLEKRGHFYSCHKLASGEIRHVEVYIN 171

Query: 280 -VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN---LT-VAIAIFDQNRYLQFHNRS 334
            V + +         D++       +L  + E       L+   I I   +  +   N +
Sbjct: 172 TVNIRDKELFFINVYDITASKKAERELIESEEKFKQVVELSVDGIIIGTDSGKIVDCNGA 231

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              ++  D   +            L+  +  P  LN         +     +T +     
Sbjct: 232 ACRIFGYDKEEILK----------LQVIDLFPGDLNIIAHDITSCNKAAGEKTVERINQK 281

Query: 395 PNGQTL--HVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
            +G +    V       G   G I    ++T +   E       +     +++  +G+ +
Sbjct: 282 KDGTSFPAEVAARRVKLGNEEGLIVYVRDITERKKAEKALKESEENFRTLVNNTLDGILI 341

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              +GR+  +N A   +    E     G  I    A  S      D  ++       +  
Sbjct: 342 LDFEGRVLAANAAIGKMLG-MELEKVAGIDIMKYLAPESVPVAVEDQINVLNG-RGGYLS 399

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
             KS     E L    L   II       ++   ++T   +AE AL     A   A+  K
Sbjct: 400 VYKSTSCNGEPLWIEGLGTKIIYRGQPANIVVIRDITARKKAEEALINAKTAAEAANRTK 459

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+EL++PL +IIGF+DLL     G LN KQS+Y  +IS++   LLN++N IL+
Sbjct: 460 SEFLTNMSHELKTPLNSIIGFSDLLIEGIAGPLNEKQSRYAGFISSNGKNLLNIINGILE 519

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           L+ V++   +L      +N+ +N+   +   ++ + NI++   SD       AD  +  Q
Sbjct: 520 LSKVESEGDELTLQEFSVNESINKSISTALPQILKKNIKLNYNSDSDPLCIFADENKFRQ 579

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-- 747
           I   +L+NA+ F+ +   + + + ++ G     VK+ G  IPED    +F  F+      
Sbjct: 580 IMESLLNNAVKFTPEDGLIDISSKQEGGIVTIKVKDTGIGIPEDSLDKIFKPFIQLESSL 639

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                G GLGL++ + ++ +HGG++S+ S     ++    +P
Sbjct: 640 SRTFEGTGLGLTLAKKYVEMHGGNISVESKTGKGSSFKVELP 681


>gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
          Length = 1271

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 128/650 (19%), Positives = 253/650 (38%), Gaps = 62/650 (9%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTE 227
           G  S LAE     +KL+N  +    +F+S+   V+  D    I   N +          E
Sbjct: 146 GPESRLAELQSINRKLTNEKNKLWTIFESMTECVFVVDSNMKITEINAAAAAYFQVNPEE 205

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY------KIVR 281
             G+   + +G   +     +   M S    +    E  +  + G  +          + 
Sbjct: 206 VLGLNCSELMGCECREEDCHLFHAMKSGGCYKDVELEIKT--QKGRRRILTSGSFLHDIS 263

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
              + G    A D+++   +   L       ++   +++IFD    L + N +  +L+ +
Sbjct: 264 GKYAGGVQVFA-DITERNLMEQSLRLHMHANNSSVESVSIFDIGGNLTYANPAAEDLFGM 322

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           D + L           +      L   +  K+WK  +    K    H +   LP G  + 
Sbjct: 323 DGSQLLG---LGIEQAYQGGEMVLLSLIRGKSWKGEVSQNGKILYIHANPIRLPKGNII- 378

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK-------VQGETIDHLSEGVAVFGPDG 454
                    G      ++T     + K     +            I  ++  +A+   +G
Sbjct: 379 ---------GFYVSARDITAHKATQLKLQQAREETEREAAKLRAIISIMNAAIALVDAEG 429

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            I   N    ++               ++        +     +    +I +F   R S 
Sbjct: 430 IITEINEQCLTITGKVR---------EDLIGKKLESLHNGKILEKIQKMIANFRLNRNSS 480

Query: 515 QGTLELLSDSV-LEYSIIPLPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIK 569
             T+      + +  +I P+   +T        V+VT+  +A+R   +      KA + K
Sbjct: 481 PVTITRRVGGMDVIMNIQPVYRDKTYDGVLLMVVDVTEVAKAKRQAEQALLVAEKASKAK 540

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+P+  I+GF ++L   +   L+ +Q + V+ I      L++L+NDILD
Sbjct: 541 SEFLANMSHEIRTPMNGILGFAEVLIQQE---LSPQQQESVKIIQQCGEQLMDLINDILD 597

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
           L+ +++G + +  ++  L  L++E    I +K  E N+ +K+  +  L      D  R+ 
Sbjct: 598 LSKIESGKLVMEETSFSLRKLIHEAVNVIESKFLEQNVEMKIDIEQNLHDQLKGDPTRIR 657

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARD-------NGDFIFSVKNNGSSIPEDMCKSVFNR 741
           Q+   ++SNA  F+ +G  V +  A +            F +++ G  IP++  K +F+ 
Sbjct: 658 QVLYNLISNAAKFTHQG-YVKISVAEESISGADHQIKLRFCIEDTGIGIPKEKLKLIFDA 716

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        R   G GLGL+I +S   L GG +++ S     +  +  IP
Sbjct: 717 FTQADGSTTRKYGGTGLGLTICKSLTQLMGGEINVESQVNKGSIFSFYIP 766


>gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1282

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 131/670 (19%), Positives = 254/670 (37%), Gaps = 85/670 (12%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
               + + L         + ++L   ++ +++ G I   N +  +    +       +  
Sbjct: 346 RLRRRSQALDEERRNLSAMNNALAEGIYMQNRDGVITRVNPAACQLLGYDADELLGQVAH 405

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVS------------TLEHGNNKSYKIVRVL---- 283
              LF        +   A    F +TV               ++G     +I        
Sbjct: 406 --DLFHRHGGNGAVPKEAC--PFFQTVHHSGQGYDGEEYFLCKNGELLLMEIASRPIFQQ 461

Query: 284 -NSFGEAGIAIDVSKEITVNDQLTHTYE-------ILHNLTVAIAIFDQNRYLQFHNRSF 335
               G      D+++       L  + E        +     ++ I D +  +++ N+ F
Sbjct: 462 GTVVGSVTAFRDITERKHTEAALLQSEENGRKLMTAVEQSPASVVITDSDGTIEYVNQKF 521

Query: 336 VELWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
           V+         L  NP        +  +  +PE++  + W+     +    E H      
Sbjct: 522 VQKSGFSVEEALGQNP-------RILKSGMMPEEIYKELWQTITAGLEWKGELHNK---R 571

Query: 395 PNGQTLHVIVTSNP---RGGTIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            +G      V+ +P     GTI  F    E++T ++ +E +     ++Q   I+ L  G+
Sbjct: 572 KDGTLYWEAVSISPIRNEQGTITHFIAIKEDITDRMRMEAELRENERIQRTLIESLPIGL 631

Query: 448 AVFGPDGRIKL-SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD--GWDLFAAII 504
           A+   + RI    NP   SL+  +   +        I   C  +    D     +    +
Sbjct: 632 AIIDGESRIIEEVNPLAASLFGADRETI--------IGRECHHFLCPQDELSCPIIDRGL 683

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
              + +R  L+     L        I      + +  FV++ +  +AE ++ E N  L  
Sbjct: 684 AVDNSDRLMLRADGTTLPVLKTVRMITIKGRRKLLECFVDIRERKQAEESVREANRQLEA 743

Query: 565 A--------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A                 K+ F+ ++S+E+R+P+  IIG T L   ++    + K+ +++
Sbjct: 744 AIVRAERLAREAESASRAKSQFLANMSHEIRTPMNAIIGMTHLAMQTR---DDDKRGRFL 800

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  S+  LL L+NDILD + ++AG +KL+ +      LL EV  ++     E  +R+ 
Sbjct: 801 DTVRHSAESLLGLLNDILDFSKMEAGQLKLSTAPFSPRQLLEEVMATLQMPAGEKGLRLA 860

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFS 722
           +     L    V D  RL QI   ++ NA+ F++ GS + L+  ++            F+
Sbjct: 861 MDIAPNLPPCLVGDDLRLRQILLNLVGNAIKFTAAGS-ITLRITQEQPSSGGSEPLIHFT 919

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I E+    +FN F    +    Q  G GLGLSI +  + L GG + + S    
Sbjct: 920 VIDTGIGIAEEKRALIFNSFEQADNSYVRQYGGTGLGLSICKQLVTLMGGKIWVESRINQ 979

Query: 781 VTTINCRIPS 790
            +  +  +P 
Sbjct: 980 GSAFHVLVPL 989



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 96/321 (29%), Gaps = 44/321 (13%)

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
           +L+        I  +G V GS    R +      +E   T     +   +        + 
Sbjct: 447 ELLLMEIASRPIFQQGTVVGSVTAFRDI------TERKHTEAALLQSEENGRKLMTAVEQ 500

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-----KEEIKKRMISSS 256
               V   D  G I + N  + + +   G   ++A+G++ ++       EEI K +  + 
Sbjct: 501 SPASVVITDSDGTIEYVNQKFVQKS---GFSVEEALGQNPRILKSGMMPEEIYKELWQTI 557

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG-------IAIDVSKEITVNDQLTHTY 309
                +   +          ++ V +     E G       I  D++  + +  +L    
Sbjct: 558 TAGLEWKGELHNKRKDGTLYWEAVSISPIRNEQGTITHFIAIKEDITDRMRMEAELRENE 617

Query: 310 EI----LHNLTVAIAIFDQNRY-LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
            I    + +L + +AI D     ++  N     L+  D   +     +  L         
Sbjct: 618 RIQRTLIESLPIGLAIIDGESRIIEEVNPLAASLFGADRETIIGRECHHFLC-------- 669

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI-----VTSNPRGGTIWMFENL 419
                        I     + +         +G TL V+     +T   R   +  F ++
Sbjct: 670 -----PQDELSCPIIDRGLAVDNSDRLMLRADGTTLPVLKTVRMITIKGRRKLLECFVDI 724

Query: 420 TVQVDLETKYNTLVKVQGETI 440
             +   E       +     I
Sbjct: 725 RERKQAEESVREANRQLEAAI 745


>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1545

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 131/796 (16%), Positives = 289/796 (36%), Gaps = 101/796 (12%)

Query: 60   SFLSEICDQLSKYHSLLTENNCLTIVWDGK-------DETPEIIGQLHQRI-DIPQTDTD 111
            + L++  ++     +++        V D         +    + GQ  Q +   P     
Sbjct: 458  AELADALEKARLAEAVINAVKDPIFVKDDHLRFVFVNEAFAALFGQTPQAMLGKPG---- 513

Query: 112  LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG----RVSG----SC 163
                 ++L  +      ++   +   G+ +++      +   +++G    R+        
Sbjct: 514  ----GDFLPTNAVALFEQSERDVLATGRPYEV------EENFEVDGASRSRIVRKSRVGM 563

Query: 164  AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
            A  R   + G   ++++   +  +  +       + +SL   V   D+    ++AN   +
Sbjct: 564  ASGR-NYVAGFLFDISDMKRRETEAQDARKHLASVLESLPAAVIIYDRDDRFVFANRKIQ 622

Query: 224  KNTETEGIVFQKAI-------------------GESRKLFKEEIKKRMISSSALEKNFCE 264
                     +Q                              +    R + +         
Sbjct: 623  DTLPALKPAWQPGCTFREALVLGHANGYFRSSGDPQIDQLYDSDHDRWLDAILARYRLPS 682

Query: 265  TVSTLEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYE-------ILHNLT 316
            +     + + + Y++  +    G   G+ +D+S+  +    L  +         ++  L 
Sbjct: 683  SSYERHNPDGRWYQVYDMRTDDGTFIGVRVDISEIKSREAALRDSMRQIDLFRHVMDELP 742

Query: 317  VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            VA  I  Q+  ++F N+++  +  +         + ++++          +  +  +  +
Sbjct: 743  VAAFIKAQDLSIEFVNKAWCAITGL---------AKEDVIGRTDRQLFGAQDADGYSHDD 793

Query: 377  NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT------IWMFENLTVQVDLETKYN 430
               +V    +  ++     +G    ++   +           +    ++T     E    
Sbjct: 794  TQVAVTGVVKEVEEPVTHRDGTVRQLMTRKSRLVALDGSVHLVGSSTDITDVKARERALE 853

Query: 431  TLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
              ++   V    ID++   +     D R    N  +  L    +      T I       
Sbjct: 854  ESMRENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGWCDLTGFSKEEAIGKTDIEIFGPDG 913

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE------YSIIPLPNAQTMLT 541
              + N        A + T    E + ++ T+ L   SV          I    +   + +
Sbjct: 914  EAFVNGD-----LAVLRTG---ETQEVEETVTLADGSVRHQFARKGAMIASDGSLYLIGS 965

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              ++T+    E  L E  +    AD  K+ F+ ++S+E+R+P+  ++G  +LL  S    
Sbjct: 966  TTDITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS---D 1022

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+ KQ  + + I  S   LL ++NDILD + +DAG + L+ +   L + + +V   ++T+
Sbjct: 1023 LDPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTR 1082

Query: 662  MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG 717
              E ++ + V  + +L S F+ D  R+ QI + +L NA+ F+ +G     V  +      
Sbjct: 1083 AKEKDLELIVRVEPRLESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGT 1142

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                SV + G  IPE+  K VF +F        RR  G GLGL+I    + L GG + + 
Sbjct: 1143 KLTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGDIGVE 1202

Query: 776  SSDEGVTTIN--CRIP 789
            S++   +T      +P
Sbjct: 1203 SAEGKGSTFWFSVTLP 1218



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/458 (14%), Positives = 146/458 (31%), Gaps = 53/458 (11%)

Query: 145 AETQNDCAIKIEGRVSGSCAFLR-ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
             T        EGR +G     R + +L G +  L        +   H++  +   D++ 
Sbjct: 150 VLTSGFPKFDDEGRFAGYRGIGRNVTALAGAFKNLGREPSGDGEPDQHLADLERTMDAMH 209

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             V   D   D L  N +Y+  +         A+G    L  E  +   I     E+ + 
Sbjct: 210 MGVVLLDARLDTLIVNKAYRDLSRIPDGAV--AVGAPFSLLMELNRSSGIYGDIDEQQWQ 267

Query: 264 ETVSTLEH----------------------------GNNKS---YKIVRVLNSFGEAGIA 292
             ++T                               G  +    Y++  +     E    
Sbjct: 268 RYLATRLDEIRAGSVAPREFVHANGRTMMFSVTALSGGRRLLTYYEVTEIKQRDAEIK-- 325

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
              S      +       ++  + + + + D +   +  NR+F + W+ID        S 
Sbjct: 326 ---SANARNAETFASLRTMVDQMPIGVLVLDADMRAEIINRAFYDFWQIDARRAEIGCSF 382

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            +L++  R     P   +  +W+ +I       ++       +   +G+TL   +     
Sbjct: 383 RDLMDASRD--IDPFGADDASWQRHIAEREAEIRAGIAGSRQFPRNDGRTLISSMAPLAG 440

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G  +  + ++T   D E +    ++        I+ + + + V     R    N AF +L
Sbjct: 441 GKRLISYVDVTDMKDREAELADALEKARLAEAVINAVKDPIFVKDDHLRFVFVNEAFAAL 500

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +      +  G    +   T +    E    D+ A       +E   + G        ++
Sbjct: 501 FGQTPQAML-GKPGGDFLPTNAVALFEQSERDVLATGRPYEVEENFEVDGA---SRSRIV 556

Query: 527 EYSIIPLPNAQTMLTF--VNVTDSVRAERALTEKNEAL 562
             S + + + +  +     +++D  R E    +  + L
Sbjct: 557 RKSRVGMASGRNYVAGFLFDISDMKRRETEAQDARKHL 594



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 133/414 (32%), Gaps = 37/414 (8%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI---GESRK 242
               +     + L ++    VW  D      W + +Y+  T  +             ++ 
Sbjct: 54  ASCMDSNDALRRLVEAGSDWVWETDAELRFSWLSQNYQAATGIDPANVLGRFRFDFLNQV 113

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS--------FGEAGIAID 294
           L  +      +      + F + V  L+ G+     ++              G  GI  +
Sbjct: 114 LNGDRSGAAHLEDLQAHRPFRDFVYELKAGSADCRWVLTSGFPKFDDEGRFAGYRGIGRN 173

Query: 295 VSKEITV--------------NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
           V+                   +  L      +  + + + + D        N+++ +L  
Sbjct: 174 VTALAGAFKNLGREPSGDGEPDQHLADLERTMDAMHMGVVLLDARLDTLIVNKAYRDLSR 233

Query: 341 IDLAFLATNPSNDELLEFLRSANKLP--EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           I    +A       L+E  RS+      ++  W+ +        ++       +   NG+
Sbjct: 234 IPDGAVAVGAPFSLLMELNRSSGIYGDIDEQQWQRYLATRLDEIRAGSVAPREFVHANGR 293

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-------DHLSEGVAVFG 451
           T+   VT+   G  +  +  +T     + +  +      ET        D +  GV V  
Sbjct: 294 TMMFSVTALSGGRRLLTYYEVTEIKQRDAEIKSANARNAETFASLRTMVDQMPIGVLVLD 353

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE- 510
            D R ++ N AF   W+ +  R   G   R++                +   I   + E 
Sbjct: 354 ADMRAEIINRAFYDFWQIDARRAEIGCSFRDLMDASRDIDPFGADDASWQRHIAEREAEI 413

Query: 511 RKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           R  + G+ +        L  S+ PL   + ++++V+VTD    E  L +  E  
Sbjct: 414 RAGIAGSRQFPRNDGRTLISSMAPLAGGKRLISYVDVTDMKDREAELADALEKA 467



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/480 (12%), Positives = 133/480 (27%), Gaps = 42/480 (8%)

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           L+   +++R    +            +     +SG    L    +  I    AE      
Sbjct: 270 LATRLDEIRAGSVAPREFVHANGRTMMFSVTALSGGRRLLTYYEVTEIKQRDAEIKSANA 329

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY------KKNTETEGIVFQKAIGES 240
           + +   +  + + D +   V   D        N ++             G  F+  +  S
Sbjct: 330 RNAETFASLRTMVDQMPIGVLVLDADMRAEIINRAFYDFWQIDARRAEIGCSFRDLMDAS 389

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA-------- 292
           R +  +       S           +     G+ +  +          A +A        
Sbjct: 390 RDI--DPFGADDASWQRHIAEREAEIRAGIAGSRQFPRNDGRTLISSMAPLAGGKRLISY 447

Query: 293 IDVSKEITVNDQLTHTYE-------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           +DV+       +L    E       +++ +   I + D +    F N +F  L+      
Sbjct: 448 VDVTDMKDREAELADALEKARLAEAVINAVKDPIFVKDDHLRFVFVNEAFAALFGQTPQA 507

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +   P  D L     +A  L EQ              + +            +   V   
Sbjct: 508 MLGKPGGDFLPT---NAVALFEQSERDVLATGRPYEVEENFEVDGASRSRIVRKSRV-GM 563

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           ++ R        +++     ET+     K     ++ L   V ++  D R   +N   + 
Sbjct: 564 ASGRNYVAGFLFDISDMKRRETEAQDARKHLASVLESLPAAVIIYDRDDRFVFANRKIQD 623

Query: 466 LWKTEENRLSPGTHIRN--IAATCSRYYN-----------ESDGWDLFAAIITSFDDERK 512
                +    PG   R   +    + Y+            +SD      AI+  +     
Sbjct: 624 TLPALKPAWQPGCTFREALVLGHANGYFRSSGDPQIDQLYDSDHDRWLDAILARYRLPSS 683

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           S +           +   +   +   +   V++++    E AL +    +     + +  
Sbjct: 684 SYER--HNPDGRWYQVYDMRTDDGTFIGVRVDISEIKSREAALRDSMRQIDLFRHVMDEL 741


>gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9]
 gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9]
          Length = 1205

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 116/637 (18%), Positives = 238/637 (37%), Gaps = 37/637 (5%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK----A 236
                 +L      ++ + DSL  +V   D  G   + N +++  +     +       A
Sbjct: 159 LDDTRSQLVAAEHSYREVIDSLSEVVCRIDSHGYWQFLNPAWETVSGYPAALSLGHSWLA 218

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAG 290
                   + +I+   + + A+E    +       G+ +   +             G  G
Sbjct: 219 RWHPADQVQAQIRFADLIAGAVEVCRFDVRCIAADGSLRWLSVHLRPMHGSDCQVSGCVG 278

Query: 291 IAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
              DV++      +L  T     + + +L   + +FD    L   NR   EL+    A L
Sbjct: 279 TLTDVTETRLAEAELDRTRGQLADAVDSLDAGLLMFDAEDRLVLCNRKLFELYPDWTAHL 338

Query: 347 ATNPSNDELLEFL------RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
               + +  L+        ++     E        +         E     W       L
Sbjct: 339 RPGTTLESFLQAQISLGGPQAMGMSEEAFRQYKLAQYRDGCKGQIEPFARGW-------L 391

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLS 459
            V  +    GG + +  +++    LE       +     ++  S G+  +   +G +  S
Sbjct: 392 QVDSSRTRDGGMVSLHADISEYKALEAALRLSEERFKLAVESASLGLWDWDLVNGDMYGS 451

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
              +R+  +             ++       ++ +            FD E +    + +
Sbjct: 452 ELLYRTTGQPHPVDTGVRRDWFDLVHPADLPHSRAALVQHLKQQTPVFDSEIRIRDQSGQ 511

Query: 520 LLSDSVLEYSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                V    +    + + +    T  ++     +E A+    EA  +A   K+ F+ ++
Sbjct: 512 YRWVRVCGRVVTRQASGRALRMIGTLADIEARKASEAAILSAKEAAEEASRAKSDFLANM 571

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  I+G T L   ++   L+ +Q +Y++ + +S+ +LL ++NDILD + ++AG
Sbjct: 572 SHEIRTPMNGILGMTRLCLATE---LSEEQREYLDMVDSSAQLLLTVINDILDFSKIEAG 628

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695
            ++L+ +   L +L+ +  Q +A K  E  + I       L  S  AD  RL Q+   +L
Sbjct: 629 KLELSATDFSLRELVRDTLQPLALKAGEKGLEILCDIPPSLADSRHADATRLRQVLGNLL 688

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
            NA+ F+  G   +    + +G   FSV++ G  I  +    VF  F         +  G
Sbjct: 689 GNAVKFTEVGEVELQVREQADGLLRFSVRDTGIGISREGLAQVFESFSQADSSISRRYGG 748

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGL+I    + + GG + + S     +  +  +P 
Sbjct: 749 TGLGLTISSRLVGMMGGTLQVESEAGLGSCFHFAVPL 785


>gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 1046

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 102/372 (27%), Positives = 174/372 (46%), Gaps = 16/372 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           ++      +   +D LSE V     + +I   N A       + N +  G H +++    
Sbjct: 367 EFKAQEHEKKLILDSLSELVVFMDSELKIIWLNKAALDHMGMKINDV-IGRHYQDMYI-- 423

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTF 542
              Y E+ G      ++ S ++E     G +      +   + IP+ N        + T 
Sbjct: 424 --LYKENPGKSPVLKVLESGNEEF----GEVVTQDGKIWTVTAIPIKNEDGRITGILKTG 477

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T   R+E  L +      +A+  K+ F+ +VS+ELR+PL +IIGF+D+L     G L
Sbjct: 478 LDITAHRRSEEKLIQAKLEAEEANNSKSEFLANVSHELRTPLNSIIGFSDILIEKVFGEL 537

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N KQ +YV  IS S   LL L+NDILDL+ V+AG M+L+YS   ++ +  EVK  +   +
Sbjct: 538 NEKQFRYVNNISTSGKHLLVLINDILDLSKVEAGKMELHYSEFSIDPVFEEVKAVLFPLI 597

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               + +    +    +  ADR RL+QI   ++SNA+ F+  G  V +         + S
Sbjct: 598 QAKPLEVTFNVEPDFTTLEADRGRLIQILYNLISNAIKFTPNGGKVSVYCKESGNRALIS 657

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +    +F  F        R+  G GLGL++V+  +NLH G + + S    
Sbjct: 658 VIDTGIGISAEDQVKLFQPFTQLDASTSRQYCGTGLGLALVKKIVNLHQGDIWVESDPGK 717

Query: 781 VTTINCRIPSKE 792
            +     +P ++
Sbjct: 718 GSNFTFALPLRK 729


>gi|329924932|ref|ZP_08279879.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328940316|gb|EGG36645.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 1003

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 112/540 (20%), Positives = 216/540 (40%), Gaps = 28/540 (5%)

Query: 271 HGNNKSYKI--VRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIA 320
            G +  +++    +    G+      IA D+S+   +  +L  + +   +L      A+ 
Sbjct: 462 DGRHIWFEVNCKYISTQDGQKNEIISIARDISERKLMEFKLKESEQRYRSLFEYNPSAVY 521

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
             + +      N++  EL    L  L            +   +      ++   KE I  
Sbjct: 522 SMNLDGDYITANQNLQELTGYTLDELIG----MYFGPIVAEKDMARTLFHFNQAKEGIPQ 577

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            Y  +  HKD   +        I   +   G   +  ++T ++    +   L +     +
Sbjct: 578 SYDLTIIHKDGRPIEINTINIPIFVEDEVVGVYGITRDITERIRTMEEIKKLSRELTLLL 637

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWD 498
           + +SEG+      G++   NPA  ++    E   + G     I         +   +   
Sbjct: 638 NTVSEGIIGLDIHGQVAFINPAGAAMLD-YEPTTTIGRPCDQIIKEIRHDGTFYRGEDSP 696

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L  A+       R  +       +  + +Y + P+ +       V V   +  E+ +   
Sbjct: 697 LVRAVKQGVPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERKGAVMVFRDITDEKEIIRA 756

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   +AD+ K  F+  +S+ELR+P+  IIG  +LL T++   L+  Q  Y+  +  SS 
Sbjct: 757 KENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTE---LDEDQQNYIHILMESSG 813

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+++N+ILD + ++ G M LN+  I L  LL  V    + K  +  + +  I+   + 
Sbjct: 814 SLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLFSAKAKQKGLSLSFINSANVP 873

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG----DFIFSVKNNGSSIPE 732
              + D  RL Q+   ++SNA+ F+ +GS    ++  R  G       F VK+ G  I  
Sbjct: 874 DVIIGDALRLRQVLVNLISNAIKFTHEGSITMSVEGLRRTGTQEFTLAFQVKDTGIGIAP 933

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++   +F  F         +  G GLGL+I +  + L GG + + S +   ++    IP+
Sbjct: 934 ELQHQLFTSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRENAGSSFYFTIPT 993



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 96/291 (32%), Gaps = 27/291 (9%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            +  I  +++E  L   KL      ++ LF+     V+  +  GD + AN + ++ T   
Sbjct: 484 EIISIARDISERKLMEFKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYT 543

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--- 286
                          K+  +     + A E        T+ H + +  +I  +       
Sbjct: 544 LDELIGMYFGPIVAEKDMARTLFHFNQAKEGIPQSYDLTIIHKDGRPIEINTINIPIFVE 603

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
               G  GI  D+++ I   +++         +L+ ++  I   D +  + F N +   +
Sbjct: 604 DEVVGVYGITRDITERIRTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINPAGAAM 663

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET---HKDTWHLP 395
            + +       P +  + E             ++     +    K        +      
Sbjct: 664 LDYEPTTTIGRPCDQIIKEIRHDGTF------YRGEDSPLVRAVKQGVPLSRAEIVLWRG 717

Query: 396 NGQTLHVIVTSNP------RGGTIWMFENLTVQVD-LETKYNTLVKVQGET 439
           +G +       NP      R G + +F ++T + + +  K N     Q +T
Sbjct: 718 DGTSFLADYQVNPIWDQGERKGAVMVFRDITDEKEIIRAKENAERADQAKT 768



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 113/367 (30%), Gaps = 54/367 (14%)

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------IVRVLNSFGEA 289
            I E R+  ++ ++  +    A E  +   +     G  ++ +      +          
Sbjct: 304 VIPEDRERLEQVVRTAI-QGKADEIIYRIQLK---DGQTRTIRAQWEVSVTNEGRPMEMV 359

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G+A D+++++ +  Q          +T           L F +RS ++ +     FL  +
Sbjct: 360 GMAQDITEQVMIEQQSLENENKYKLIT--------ENSLDFISRSTIDCF----TFLYCS 407

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE---------THKDTWHLPNGQTL 400
           PS   LL +           ++  + E+I  +    E              +   +G+ +
Sbjct: 408 PSCYALLGYRPEEMVGTSSFDY-VYAEDIAPLQDYLENCLEGKMLTPITFRYIHKDGRHI 466

Query: 401 HVIVT----SNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
              V     S   G     I +  +++ +  +E K     +      ++    V     D
Sbjct: 467 WFEVNCKYISTQDGQKNEIISIARDISERKLMEFKLKESEQRYRSLFEYNPSAVYSMNLD 526

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G    +N   + L     + L  G +   I A                 I  S+D     
Sbjct: 527 GDYITANQNLQELTGYTLDEL-IGMYFGPIVAEKDMARTLFHFNQAKEGIPQSYD----- 580

Query: 514 LQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
              T+       +E + I +P     + +  +    D     R +    E ++K      
Sbjct: 581 --LTIIHKDGRPIEINTINIPIFVEDEVVGVYGITRDITERIRTM----EEIKKLSRELT 634

Query: 571 SFVQHVS 577
             +  VS
Sbjct: 635 LLLNTVS 641


>gi|254412939|ref|ZP_05026711.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180103|gb|EDX75095.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1055

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 130/645 (20%), Positives = 253/645 (39%), Gaps = 69/645 (10%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              + ++L +    ++ + +    L+      G + + N  Y       G   ++ IG  
Sbjct: 211 VEQQKQQLQHSEFRYRAIIEDQSELICRYSADGILTFVNEVY---CRYFGKTPKELIGHR 267

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEH------GNNKS--------YKIVRVLNSF 286
                    + ++     E N    V  +EH      G  +         +     L  F
Sbjct: 268 FVPLIHPDDQAVLEGFIAELNPNNPVGIVEHRVILESGEIRWQQWSDRAIFDNQGRLLEF 327

Query: 287 GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              G   D++     E  +         I+ + +  I I D+   + F N +   L   D
Sbjct: 328 QAVG--RDITDCKLTEARLRQSEARLNAIVSSTSDGIMIVDRQGQVLFTNPAAANLLNQD 385

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           +  L            L     LP  +N  T    + +  + S                 
Sbjct: 386 VENL------------LNYNFGLPVGVNQTTELGIVRADGQLSFAEMS------------ 421

Query: 403 IVTSNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           +V +   G +++     ++T +   E       +      +  + G+A+  P G++   N
Sbjct: 422 VVETEWEGESVFEICLRDVTERQRAEAALRESEERFRAIFEQAAVGIALGTPSGQLIRVN 481

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTL 518
             F  L   EE+ L       +I     R    +D   L A   +++  E++ +   G  
Sbjct: 482 QRFCDLVGYEESELLQ-LSFPDITHPDDRAAELNDLTQLLAGQRSTYSREKRFIRKDGQW 540

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + ++ +V             +    ++    + E AL +  +A   A+  K+ F+ ++S+
Sbjct: 541 QWVNVAVSLVRTWMDTPNYIIGVVEDIQQRKQTEVALQQALDAAEAANHGKSEFLANMSH 600

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  I+GFT L+      SLN  Q  Y+  I+ S   LL+L+N++L+++ ++AG +
Sbjct: 601 ELRTPLNAILGFTQLMARDA--SLNQDQQDYLGIITRSGEHLLDLINNVLNMSKIEAGRI 658

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSN 697
            L+ ++  L  L++ + + +  K     +++ V     + ++ +AD  +L QI   ++ N
Sbjct: 659 SLSENSFDLYSLVDSIAEMLRLKALSKGVQLMVERTANVPNYGMADEGKLRQILINLVGN 718

Query: 698 AMDFSSKGSTVILKAARDNGDFI------------FSVKNNGSSIPEDMCKSVFNRFVSN 745
           A+ F+S+G  VIL+    +                F V++ G  IP D   ++F  FV  
Sbjct: 719 AVKFTSQG-RVILRVQEISDRITAPTNTDTQSRLFFEVEDTGVGIPPDELDTLFQAFVQT 777

Query: 746 AHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 + G GLGL+I   F+ L GG ++I+S+    T +   IP
Sbjct: 778 KTSQRSQSGTGLGLAISRRFVQLMGGDITINSTPGQGTLVKFDIP 822



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 84/287 (29%), Gaps = 36/287 (12%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+L    +  ++ +  L   +L    +    +  S    +   D+ G +L+ N +     
Sbjct: 323 RLLEFQAVGRDITDCKLTEARLRQSEARLNAIVSSTSDGIMIVDRQGQVLFTNPAAANLL 382

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
             +                +  +  ++ +         +V   E      ++I       
Sbjct: 383 NQDVENLLNYNFGLPVGVNQTTELGIVRADGQLSFAEMSVVETEWEGESVFEIC------ 436

Query: 287 GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
                  DV++    E  + +       I     V IA+   +  L   N+ F +L   +
Sbjct: 437 -----LRDVTERQRAEAALRESEERFRAIFEQAAVGIALGTPSGQLIRVNQRFCDLVGYE 491

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
            + L          +     ++  E  +       + +  +S+ + +  +   +GQ   V
Sbjct: 492 ESELLQL----SFPDITHPDDRAAELNDL----TQLLAGQRSTYSREKRFIRKDGQWQWV 543

Query: 403 IV----------TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            V          T N     I + E++  +   E      +      
Sbjct: 544 NVAVSLVRTWMDTPN---YIIGVVEDIQQRKQTEVALQQALDAAEAA 587


>gi|261406146|ref|YP_003242387.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261282609|gb|ACX64580.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 1004

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 111/541 (20%), Positives = 213/541 (39%), Gaps = 29/541 (5%)

Query: 271 HGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIA 320
            G +  +++       +         IA D+S+   +  +L  + +   +L      A+ 
Sbjct: 462 DGRHIWFEVNCKYISTQGGQKNEIISIARDISERKLMEFKLKESEQRYRSLFEYNPSAVY 521

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
             + +      N++  EL    L  L            +   +      ++   KE I  
Sbjct: 522 SMNLDGDYITANQNLQELTGYTLDELIG----MYFGPIVAEKDMARTLFHFNQAKEGIPQ 577

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            Y  +  HKD   +        I   +   G   +  ++T ++    +   L +     +
Sbjct: 578 SYDLTIIHKDGRPIEINTINIPIFVDDEVVGVYGITRDITERIRTMEEIKKLSRELTLLL 637

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWD 498
           + +SEG+      G++   NPA  ++    E   + G     I         +   +   
Sbjct: 638 NTVSEGIIGLDIHGQVAFINPAGAAMLD-YEPATTIGRPCDQIIKEIRHDGTFYRGEDSP 696

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L  A+       R  +       +  + +Y + P+ +       V V   +  E+ +   
Sbjct: 697 LVQAVKQGIPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERKGAVMVFRDITDEKEIIRA 756

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   +AD+ K  F+  +S+ELR+P+  IIG  +LL T++   L+  Q  Y+  +  SS 
Sbjct: 757 KENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLSTTE---LDEDQQNYIHILMESSG 813

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG--K 676
            LL+++N+ILD + ++ G M LN+  I L  LL  V    + K  E  + +    +    
Sbjct: 814 SLLHILNEILDFSKIETGNMTLNHEPIDLRSLLEVVVDLFSAKAKEKGLSLSFNINSANV 873

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG----DFIFSVKNNGSSIP 731
               + D  RL Q+   ++SNA+ F+ +GS  + ++  R  G       F VK+ G  I 
Sbjct: 874 PDVIIGDALRLRQVLVNLISNAIKFTHEGSITLNVEGLRRTGTQEFTLAFQVKDTGIGIA 933

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++   +F  F         +  G GLGL+I +  + L GG + + S +   ++    IP
Sbjct: 934 PELQHQLFTSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRENVGSSFYFTIP 993

Query: 790 S 790
           +
Sbjct: 994 T 994



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 104/318 (32%), Gaps = 35/318 (11%)

Query: 151 CAIKIEGRVSGSCAFLRILSLDG--------IYSELAETTLKCKKLSNHISVFKVLFDSL 202
             I  +GR        + +S  G        I  +++E  L   KL      ++ LF+  
Sbjct: 457 RYIHKDGRHIWFEVNCKYISTQGGQKNEIISIARDISERKLMEFKLKESEQRYRSLFEYN 516

Query: 203 DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
              V+  +  GD + AN + ++ T                  K+  +     + A E   
Sbjct: 517 PSAVYSMNLDGDYITANQNLQELTGYTLDELIGMYFGPIVAEKDMARTLFHFNQAKEGIP 576

Query: 263 CETVSTLEHGNNKSYKIVRVLNSF-------GEAGIAIDVSKEITVNDQLTHTYE----I 311
                T+ H + +  +I  +           G  GI  D+++ I   +++         +
Sbjct: 577 QSYDLTIIHKDGRPIEINTINIPIFVDDEVVGVYGITRDITERIRTMEEIKKLSRELTLL 636

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L+ ++  I   D +  + F N +   + + + A     P +  + E             +
Sbjct: 637 LNTVSEGIIGLDIHGQVAFINPAGAAMLDYEPATTIGRPCDQIIKEIRHDGTF------Y 690

Query: 372 KTWKENIFSVYKSSET---HKDTWHLPNGQTLHVIVTSNP------RGGTIWMFENLTVQ 422
           +     +    K        +      +G +       NP      R G + +F ++T +
Sbjct: 691 RGEDSPLVQAVKQGIPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERKGAVMVFRDITDE 750

Query: 423 VD-LETKYNTLVKVQGET 439
            + +  K N     Q +T
Sbjct: 751 KEIIRAKENAERADQAKT 768



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 112/363 (30%), Gaps = 46/363 (12%)

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--SFGEAGIAI 293
            I E R+  ++ ++  +   +       +            +++            G+A 
Sbjct: 304 VIPEDRERLEQVVRTAVQGRADEIIYRIQLKDGQIRTIRAQWEVTVTNEGRPMEMVGMAQ 363

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+++++ +  Q          +T           L F +RS ++ +     FL  +PS  
Sbjct: 364 DITEQVMIEQQSLENENKYKLIT--------ENSLDFISRSTIDCF----TFLYCSPSCY 411

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE---------THKDTWHLPNGQTLHVIV 404
            LL +           ++  + E+I  +    E              +   +G+ +   V
Sbjct: 412 ALLGYRPEEMVGTSTFDY-VYAEDIAPLQDYLENCLEGKMLTPITFRYIHKDGRHIWFEV 470

Query: 405 T---SNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
                + +GG     I +  +++ +  +E K     +      ++    V     DG   
Sbjct: 471 NCKYISTQGGQKNEIISIARDISERKLMEFKLKESEQRYRSLFEYNPSAVYSMNLDGDYI 530

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            +N   + L     + L  G +   I A                 I  S+D        T
Sbjct: 531 TANQNLQELTGYTLDEL-IGMYFGPIVAEKDMARTLFHFNQAKEGIPQSYD-------LT 582

Query: 518 LELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           +       +E + I +P   + + +  +    D     R +    E ++K        + 
Sbjct: 583 IIHKDGRPIEINTINIPIFVDDEVVGVYGITRDITERIRTM----EEIKKLSRELTLLLN 638

Query: 575 HVS 577
            VS
Sbjct: 639 TVS 641


>gi|186684843|ref|YP_001868039.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186467295|gb|ACC83096.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1123

 Score =  346 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 138/794 (17%), Positives = 271/794 (34%), Gaps = 108/794 (13%)

Query: 65  ICDQLSKYHSLLTENNCLTIVWDGKDETPE----IIGQLHQRIDIPQTDTDLLSFENWLK 120
           +    ++Y SL+T N    IVW     TP+     +            +        W+ 
Sbjct: 133 LKQSEARYRSLVTANTQ--IVWV---STPQGICFELASWIAYTGQSLAEAQN---GGWID 184

Query: 121 FHHYIKLS-------KATEKLRKEGQSFDLVAETQNDCAIKIEGRVS---GSCAFLRILS 170
             H    +        A   L      + +  +  N     + G             I  
Sbjct: 185 AVHPDDRAYTGEVWSAAVANLSMYQIEYRIRGKDGNYRYFWVWGAPVIEEDGSVREWI-- 242

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG------DILWANISYKK 224
             G  +++ +  L   +       ++ L  +   +VW     G       + W   +Y  
Sbjct: 243 --GTCTDIHKRKLAEAENQRLQERYRSLVTATSQIVWAATPEGLGISNEMLTWM--AYTG 298

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV--RV 282
            +E E  V+               +    + +       E     + G  + + +    V
Sbjct: 299 QSEAEVEVWGWLDPIHPDDCARSTEVWNAAMTNRGIYQTEYRLRGKDGTYRYFSVCGAPV 358

Query: 283 LNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           L   G      G   D+        +     ++L++ + AI + D +  +   N+    L
Sbjct: 359 LEEDGSIREWIGTCTDIHDRKLAEAENQRLLDMLNHSSDAIIVRDMSDKISHWNQGAERL 418

Query: 339 WEIDLAFLATNPSNDELLEFLRSANK---LPEQLNWKTWKENI--FSVYKSSETHKDTWH 393
           +      +         L+      K   + E L    W+  +   + +    T +  W 
Sbjct: 419 YGWTREEVKGQ-CIQAFLKKTFPKPKEEIIAELLEQGNWEGEVQHLTHFGKLITVQSRW- 476

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE--------------- 438
                TL   ++  P    + +  ++T +   E     L +                   
Sbjct: 477 -----TLQRDISGQPC-AVLEINTDITARKQAEIALRQLNQELEARVVERTAALQNTLAE 530

Query: 439 ------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                  +D+L++G+ V    G+I   NPAF +++      L               +Y 
Sbjct: 531 AQGLNAILDNLADGLLVADTAGQITHFNPAFLTMYGLTATALKG-------------HYR 577

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           E     L   +  +     +     + L  + + +     +         +    S    
Sbjct: 578 ELPISGLAELVARTQSHPEEVFSAEVALTKERIGQAVATAIFKKTVEQEPLACFGSALLI 637

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--------------TSK 598
           R +T + E     D++K  F+  VS+ELR+PLT+++GF  ++K                K
Sbjct: 638 RDITAEKEI----DKMKTDFISTVSHELRTPLTSVLGFASIIKEKLETDVFPIISTEDRK 693

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L     + +  +  I + +  L +L+ND+LD+A ++AG ++     +  ++LL+    S 
Sbjct: 694 LQKTIKRVADNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPLDPSELLDWATNST 753

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           A     N +++    +  L   V DR RLLQ+   ++SNA+ F+  G  V  +  + +  
Sbjct: 754 AGLFETNGLQLVSEIEPGLPQIVGDRNRLLQVLINLISNAVKFTESG-CVTCRVKQGHDG 812

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV + G  I  +    VF +F         + +G GLGL I +  I+ HGG + + S
Sbjct: 813 VCISVIDTGIGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQIIDHHGGRIWVES 872

Query: 777 SDEGVTTINCRIPS 790
                +  +  IP+
Sbjct: 873 EPGKGSVFSFIIPT 886



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/432 (13%), Positives = 131/432 (30%), Gaps = 80/432 (18%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           I +R     +                +Y SL+T  +   IVW    E   I  ++   + 
Sbjct: 248 IHKRKLAEAENQRLQ----------ERYRSLVTATSQ--IVWAATPEGLGISNEMLTWMA 295

Query: 105 -IPQTDTDLLSFENWLKFHHYIKLSKATE----KLRKEG---QSFDLVAETQNDCAIKIE 156
              Q++ ++  +  WL   H    +++TE     +   G     + L  +        + 
Sbjct: 296 YTGQSEAEVEVWG-WLDPIHPDDCARSTEVWNAAMTNRGIYQTEYRLRGKDGTYRYFSVC 354

Query: 157 GRVS----GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF---------KVLFDSLD 203
           G       GS     I    G  +++ +  L   +    + +          + + D + 
Sbjct: 355 GAPVLEEDGS-----IREWIGTCTDIHDRKLAEAENQRLLDMLNHSSDAIIVRDMSDKIS 409

Query: 204 FLVWHRDQAGDILW--------ANISYKKNT------ETEGIVFQKAIGESR-------- 241
              W++       W           ++ K T      E    + ++   E          
Sbjct: 410 H--WNQGAERLYGWTREEVKGQCIQAFLKKTFPKPKEEIIAELLEQGNWEGEVQHLTHFG 467

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
           KL   + +  +    + +      ++T      ++   +R LN   EA +    +     
Sbjct: 468 KLITVQSRWTLQRDISGQPCAVLEINTDITARKQAEIALRQLNQELEARVVERTAALQNT 527

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN---DELLEF 358
             +      IL NL   + + D    +   N +F+ ++ +    L  +        L E 
Sbjct: 528 LAEAQGLNAILDNLADGLLVADTAGQITHFNPAFLTMYGLTATALKGHYRELPISGLAEL 587

Query: 359 LRSANKLPEQL---NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           +      PE++        KE I     ++   K            V        G+  +
Sbjct: 588 VARTQSHPEEVFSAEVALTKERIGQAVATAIFKKT-----------VEQEPLACFGSALL 636

Query: 416 FENLTVQVDLET 427
             ++T + +++ 
Sbjct: 637 IRDITAEKEIDK 648


>gi|218508683|ref|ZP_03506561.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Brasil 5]
          Length = 314

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 215/314 (68%), Positives = 258/314 (82%)

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           QLNWK+WKE   SVY++ +T  D WHLPNGQTL V  T++P+GG  W+FENLT QVDLET
Sbjct: 1   QLNWKSWKEAALSVYRALDTQSDLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLET 60

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +YNTLVKVQGETIDHLSEGVAVFGPDGRI+LSNPAFR+LW   E    PGTHIR +   C
Sbjct: 61  RYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEAC 120

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +  Y+  DGW  FA +ITSFDDER+S QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TD
Sbjct: 121 APSYDRPDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTD 180

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           SVRAERALTEKNEALRKADE+KN FVQHVSYELRSPLTNIIGFTDLL+T  +G LN +Q+
Sbjct: 181 SVRAERALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPLNERQA 240

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+++IS SS++LL LVNDILDLATVDAGIM+LNY+ I LNDLL++V   IA ++ E+ +
Sbjct: 241 EYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGV 300

Query: 668 RIKVISDGKLGSFV 681
            +++ +   LGS V
Sbjct: 301 ALEITAPAYLGSIV 314



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 7/172 (4%)

Query: 273 NNKSYKIVRVLNSFGEAGIAID-VSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRY 327
           N ++ ++    +  G A    + +++++ +  +         E + +L+  +A+F  +  
Sbjct: 29  NGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFGPDGR 88

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           ++  N +F  LW I  A          L E    +   P+   WKT+ E I S      +
Sbjct: 89  IRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSYDRPDG--WKTFAELITSFDDERRS 146

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            + T  L +G  L   V   P   T+  F N+T  V  E       +   + 
Sbjct: 147 GQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKA 198


>gi|83950384|ref|ZP_00959117.1| PAS [Roseovarius nubinhibens ISM]
 gi|83838283|gb|EAP77579.1| PAS [Roseovarius nubinhibens ISM]
          Length = 1083

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 149/842 (17%), Positives = 295/842 (35%), Gaps = 111/842 (13%)

Query: 31   AGMLLTTIIPIILLIRQ----RNSLAKKVNETYSFLSEICDQLSK-YHSLLTENNCLTI- 84
              ++   I    L +RQ    R     ++      LS+    L + Y  +L     L + 
Sbjct: 258  LFIMAAMIWGAALGLRQQNLERRRAQVQLKLAVDSLSDGFILLDEEYRMVLFNQPYLDLH 317

Query: 85   --VWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFD 142
              + D           L   I+  Q    +   E WL            +   ++G  F+
Sbjct: 318  DKIADAIKPGVYFKDILALGIERGQFPDAVGREEEWLAEQ--------LKPPGEDGNDFE 369

Query: 143  LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
            +         I  +G  +G    LR   +           +  +       +     ++L
Sbjct: 370  VAFSGGRWVRIYEKGTPNGGLVGLR-SDITRQVETRYRAEVAEQLAQKSKDLLMTAIETL 428

Query: 203  DFLVWHRDQAGDILWANISYKK-------------------NTETEGIVFQKAIGESRKL 243
                   D    ++  N  YK+                           + +A+G   + 
Sbjct: 429  PDAFVLYDAEDRLVVCNRKYKEFYKKSAEAMVPGARFVDILRFGLRHGQYPEALGREEEW 488

Query: 244  FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS-FGEAGIAIDVSKEITVN 302
              + +     +   +E+            + +  +I+       G   + +DV++ +   
Sbjct: 489  LADRMASHRAADDIIEQQLD---------DGRCLRILERPTPDGGRVSLRMDVTELVQSR 539

Query: 303  DQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +       L +    +     + D +R L   N  ++ L+E     +    S ++++ +
Sbjct: 540  ARAEQAERRLRDAINAMPAGFWLTDGDRRLTMFNDYYLSLYEKSAPAIKIGVSEEDVVAY 599

Query: 359  LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRGGTIWMF 416
                 + PE +  +  +E + + +K  +  +  W  P  NG+ +         GG + + 
Sbjct: 600  GLERGEYPEAVGRE--EEWLAAHHKRMDGGEYQWEYPLQNGRWVRSYSHPTSDGGRVGIR 657

Query: 417  ENLTVQVDLETKYNTLVKVQGETIDHLSEG--------------VAVFGPDGRIKLSNPA 462
             ++T     ET+  +  +     +                          D R    +  
Sbjct: 658  VDITELKKQETQLLSSNEKLRTALSERDAAEKRFSDVAEISNDWFWEQDADLRFTYISEG 717

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--L 520
            F  L+   + R S G  I  I    S     +D   LFAA      D R++ +  +   L
Sbjct: 718  FERLFGG-DTRKSIGMKISEIVEALSGLKEVADWELLFAA-----QDRRETFRNLVYPAL 771

Query: 521  LSDS---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             SD     ++ S +P  +            +      L    +    A+  K  F+  +S
Sbjct: 772  SSDRQPKWIQISGVPFYDDNGNFAGYRGVGTDIT--VLYNALQEAEAANVAKTDFLNVMS 829

Query: 578  YELRSPLTNIIGFT------DLL----------------KTSKLGSLNSKQSQ---YVEY 612
            +ELR+PLT I+G+       +LL                 T  +  L + Q +   Y   
Sbjct: 830  HELRTPLTVILGYNSFLAKPELLTSVKELREAASAGDLTATGAIEHLEAVQREVGKYAGK 889

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            +  S   LL L+N++LDLA +DAG +K++   + L  ++  V    +   HE ++ +  +
Sbjct: 890  MEDSGKHLLKLINEMLDLAKIDAGKLKIDPVDLELERVVRSVLDQFSNAAHEKSVDL--V 947

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                  S  AD  RL QI   ++ NA+ F+ KG  + ++A     D    V+++G  IP 
Sbjct: 948  GAIGELSVFADEMRLRQILINLVGNALKFTDKG-QIRIEAEVKGADVAIHVRDSGCGIPA 1006

Query: 733  DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F++F  + ++    + G GLGL+I    + L GG +S++S +   +     +P 
Sbjct: 1007 KEQALIFDQFNQIDSSASRAKGGTGLGLTISRRLVELQGGRISVTSEEGKGSVFTFTLPM 1066

Query: 791  KE 792
            +E
Sbjct: 1067 EE 1068


>gi|294495111|ref|YP_003541604.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666110|gb|ADE35959.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 793

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 92/373 (24%), Positives = 166/373 (44%), Gaps = 3/373 (0%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E   N    +    +D + + +      G     NPAF          +   T
Sbjct: 407 IIARKKAEEDINHYAGMITSLLDSIPDIIFFKDVKGVYMGCNPAFTEFVGRPREEIIGKT 466

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                    + ++ + D   L        ++      G   LL      Y          
Sbjct: 467 DYDLFDKAFADFFRKHDERTLELLQPRHNEEWITYPDGRKILLDMLKTPYRGPDGLLIGI 526

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    ++T+  RAE+AL +      + D +K+ F+ ++S+ELR+PL ++IGF+D+L    
Sbjct: 527 LGIGRDITERNRAEQALLKGKLIAEENDRMKSEFITNMSHELRTPLNSVIGFSDVLLKEI 586

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G LN  Q +Y+  IS S   LL L+NDILDL+ ++ G M+L      LN +L+EV+   
Sbjct: 587 KGELNDSQKKYISNISKSGRHLLELINDILDLSKIEEGKMELQCEDFDLNSILSEVESIF 646

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           + +  + +I ++ +   K+     D+ ++ Q+   +L+NA+ F+ K   + + A  ++ +
Sbjct: 647 SPQAAKKDINLQFVLSEKIPRIKGDKIKIKQVIFNLLTNAIKFTPKNGAISVIAKENDDN 706

Query: 719 FI-FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            I  SV + G  IPE   + VF+ F  V  +      G G+GLS+ + F+ +H G   + 
Sbjct: 707 IIEVSVSDTGIGIPEAKLEDVFDPFIQVDASTSRNYGGTGVGLSLAKKFVQMHDGKFCVE 766

Query: 776 SSDEGVTTINCRI 788
           S     +T    I
Sbjct: 767 SEVYKGSTFTFTI 779



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 48/163 (29%), Gaps = 25/163 (15%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E  +N        +L ++   I   D        N +F E        +      D   
Sbjct: 413 AEEDINHYAGMITSLLDSIPDIIFFKDVKGVYMGCNPAFTEFVGRPREEIIGKTDYDLFD 472

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTSNPRGG---- 411
           +             ++   E    + +    H + W   P+G+ + + +   P  G    
Sbjct: 473 KAFADF--------FRKHDERTLELLQPR--HNEEWITYPDGRKILLDMLKTPYRGPDGL 522

Query: 412 ---TIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLS 444
               + +  ++T +   E              +++ E I ++S
Sbjct: 523 LIGILGIGRDITERNRAEQALLKGKLIAEENDRMKSEFITNMS 565


>gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
 gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
          Length = 1231

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/687 (18%), Positives = 265/687 (38%), Gaps = 61/687 (8%)

Query: 154 KIEGRVSGSCAFLRILS-------LDGIYSELAETTLKCKKLSNHIS---VFKVLFDSLD 203
             +GR      ++R+++       L G+  ++ E       LS  I    + +   + L 
Sbjct: 234 FADGR------WVRMVNKRLENGMLVGLRVDVTEFKAHETLLSTQIRETWLLRAALEQLP 287

Query: 204 FLVWHRDQAGDILWANISY-----KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
             V+ RDQ   + +AN +Y         +  G    +   ++   F++E ++ + +  A+
Sbjct: 288 VGVFLRDQDRRLTYANAAYNTFLGGNLADHIGKTETEMFPQNGPRFRQENERILQTGEAI 347

Query: 259 EKNFCETVSTLEHGN----NKSYKIVRVLNSFGEAGIAIDVS-----------KEITVND 303
           E+     +   + G      +  ++    + +   G   DVS            +     
Sbjct: 348 ERTGN--MPWRDGGAVPVITRLGRVATPDDEYYLVGSVTDVSLLQDREKALIAAQAEAEA 405

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSA 362
                  +L  L V + + + +  +++ N  F ++W  I         S  E +E    +
Sbjct: 406 LHRQLQAVLRALPVGVLLLNADLVIEYVNPFFYQVWGEIGGEKSLVGKSYREFMEMNFDS 465

Query: 363 NKL--PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
                 ++     ++E +  + K+           +G+   +  T    G  +  + ++T
Sbjct: 466 GLYDYGDRPFDDVYEERVQRLLKADAFAPREVRSKSGKVTVISKTRLEGGKILSTYADVT 525

Query: 421 VQV-------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
                         +   + +        +++G+ +    G I +SN A   ++    + 
Sbjct: 526 DVRMRDAEISKARAELERVGEYMQGATRAMAQGLVLV-EQGTIIMSNEAMARMFDVPPHL 584

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDSVLEYSII 531
           L  G +     A C+   +     +    +    ++    +     + +   S L     
Sbjct: 585 LEKGRNWAGFFAHCAGRGDFGTAAEAGETLRIWRENIAANRPFSWLVHVAGKSWLNLEAT 644

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                  ++   +VT+    E  L         AD  K+ F+ ++S+E+R+P+  ++G  
Sbjct: 645 NSSGNYWLIIVTDVTEMKVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMA 704

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL  SK   L+++Q  + + I  S   LL ++NDILD + ++AG MKL        + +
Sbjct: 705 ELLAKSK---LDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAV 761

Query: 652 NEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VI 709
            +V   +++   E +I + V  D  + G  + D  R  QI + I+ NA+ F+  G   V 
Sbjct: 762 EDVVSLLSSAALEKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVE 821

Query: 710 LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           L A         F   V+++G  IP D  +++F++F        RR  G GLGL+I    
Sbjct: 822 LSAQSAEASESIFSLRVEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGL 881

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + L  G +++ S     +     IP +
Sbjct: 882 VGLFDGKINVVSEVGRGSAFEVDIPFQ 908



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 110/330 (33%), Gaps = 24/330 (7%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF--QKAIGESRKLFKEEIKKRMISS 255
              +L+     +D     +  N +Y +        F  Q ++  S  +   E + R   S
Sbjct: 23  AVAALELPACIKDGELRYVVVNEAYGRVMGRAPSAFEGQTSLSLSGDIRDAEREDRERRS 82

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI-----TVNDQLTHTYE 310
                +            +   +  R +   G      +V +E+       +  +    +
Sbjct: 83  LVFATDEAIACHAALSAQSHMLRCERFIGDDGSL-FLFEVFEEMPSAVSRKSAAVGGASD 141

Query: 311 IL------HNLTVAIAIFDQNRYLQFHNRSFVELW-EIDLAFLATNPSNDELLEFLRSAN 363
           IL        +   I ++D++  L + N  F E + ++D+  L      + L++ L S++
Sbjct: 142 ILFSSGVMDFIDAGIVVYDRDNQLVYCNARFAEFYSDLDIE-LKPGIRLEALMKTLYSSS 200

Query: 364 KLP----EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
                  +  +++ W +     +      +      +G+ + ++      G  + +  ++
Sbjct: 201 VYRCAKNDGPSFEDWMQKQLHDFSLPYLER-VEQFADGRWVRMVNKRLENGMLVGLRVDV 259

Query: 420 TVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           T     ET  +T ++   +    ++ L  GV +   D R+  +N A+ +           
Sbjct: 260 TEFKAHETLLSTQIRETWLLRAALEQLPVGVFLRDQDRRLTYANAAYNTFLGGNLADHIG 319

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            T          R+  E++        I  
Sbjct: 320 KTETEMFPQNGPRFRQENERILQTGEAIER 349



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 78/270 (28%), Gaps = 20/270 (7%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L      +  L +   I D        N ++  +     +      S     +   +  +
Sbjct: 17  LEKACRAVAALELPACIKDGELRYVVVNEAYGRVMGRAPSAFEGQTSLSLSGDIRDAERE 76

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
             E+ +     +   + + +             +    I       G++++FE       
Sbjct: 77  DRERRSLVFATDEAIACHAALSAQSHML-----RCERFIG----DDGSLFLFEVFEEMPS 127

Query: 425 LETKYNTLVKVQGETI------DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
             ++ +  V    + +      D +  G+ V+  D ++   N  F   +   +  L PG 
Sbjct: 128 AVSRKSAAVGGASDILFSSGVMDFIDAGIVVYDRDNQLVYCNARFAEFYSDLDIELKPGI 187

Query: 479 HIRNIAATCSR----YYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPL 533
            +  +  T          ++DG      +     D     L+   +      +      L
Sbjct: 188 RLEALMKTLYSSSVYRCAKNDGPSFEDWMQKQLHDFSLPYLERVEQFADGRWVRMVNKRL 247

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            N   +   V+VT+    E  L+ +     
Sbjct: 248 ENGMLVGLRVDVTEFKAHETLLSTQIRETW 277


>gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1459

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 126/678 (18%), Positives = 256/678 (37%), Gaps = 71/678 (10%)

Query: 152  AIKIEGRVSGSCAFLRILSLDGIY-----SELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
            +I+++G V    A  RI+ L+         ++ E       L     + + + +++  L+
Sbjct: 408  SIEVQGEVRHEEA--RIVPLNSQEVLVIVRDITEAKQAELALKAAEQLQRAILEAIPDLI 465

Query: 207  WHRDQAGD-ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR----MISSSALEKN 261
            +  D  G  + + +        +      +++   ++L   E+ +R    +  + A +  
Sbjct: 466  FRLDSQGICLSFISGGEVLLYGSPDTYVGRSL---QELLPPELAERRLFFVQQAIATQTR 522

Query: 262  FCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLT 316
                 S    G  +  ++ +  LN      I  DV+     +  V +       +  N  
Sbjct: 523  QRYDQSIEIEGETRHEEVRIVPLNPQEVVVIVRDVTDRVRSQQAVQESEQKFRALFENAA 582

Query: 317  VAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            VAI I       +   N   +  +                LE LR+ +   +    +  +
Sbjct: 583  VAILIRHAETGEILEANSQAIAAYGFSS------------LEELRAFDACEQSPYRRALQ 630

Query: 376  ENIFSVYKSSETHKDT--------WHLPNGQTLH--VIVTSNPRGGT---IWMFENLTVQ 422
               F++    E  +          W   +G+ +   V V      G    ++   ++T +
Sbjct: 631  GREFALQPYLEQARQQGSARFEWQWQRQDGRVVWEDVFVQPLVLRGIPCWVFTAVDITAR 690

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               E     L +     +D L     +    G  +  N A+ +        L     +  
Sbjct: 691  KSAEA---ELEQFFSVALDLL----CIADAQGYFRRLNRAWETTLGYSLQELQSRPFLEW 743

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            +          +    +    +  F +  ++  G+   +           L  +      
Sbjct: 744  VHPEDVPATQAAMQQLVEEKRLDHFVNRYRTQDGSYRFIEWRA------SLAGSLVYAAG 797

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             ++T + +A+  +    EA   A+  K+ F+  +S+E+R+P+  I+G   LL  +   SL
Sbjct: 798  RDITLAKQAQEQMKAAMEAAEAANRAKSEFLATISHEIRTPINAIMGMAGLLLDT---SL 854

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++Q  +V+ I   S +LL+L+NDILD + +++  ++L  +   L  L+ E+   +A + 
Sbjct: 855  DAQQRDWVQTIRYGSEVLLSLINDILDFSKIESQKLELEETPFSLPQLMEELLDLMAAQA 914

Query: 663  HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
               ++ +    D  L  + V D  RL QI + +LSNA+ F+ +G  V+   A++      
Sbjct: 915  QSKDLELVAWVDPALPATLVGDPNRLRQILANLLSNAIKFTPQGEVVVTVEAQEQDPQAQ 974

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
                 F V++ G  IP +    +F  F         Q  G GLGL+I +    L GG + 
Sbjct: 975  VQWVSFQVQDTGIGIPPEKQDRLFKPFSQVDSSISRQYGGTGLGLAISQRLCQLMGGTIW 1034

Query: 774  ISSSDEGVTTINCRIPSK 791
            + S     +T   RIP K
Sbjct: 1035 VQSQPGQGSTFGFRIPLK 1052



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/415 (15%), Positives = 130/415 (31%), Gaps = 58/415 (13%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-YKKNTETEG---- 230
            +++E     + L      ++ L++++  L++  D  G IL    S Y            
Sbjct: 186 RDISEQVQIKQALEASELRYRALYEAIPDLIFEIDPEGLILNCKPSPYVPTQHPPEFCVG 245

Query: 231 ----IVFQKAIGESRKLFKEEI---------------KKRMISSSALEKNFCETVSTLEH 271
                VF  + GE  +L                         + S       +    + +
Sbjct: 246 RRAQDVFPSSFGEQYQLLAGRALSTQTPQYLEYEMVLPAAAANESEPAIRRYQKACVVAY 305

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
           G ++ Y +VR            D++K       L         +  AI     +  L+  
Sbjct: 306 GRDRVYVLVR------------DITKRKEAELALREMEATQRAILQAI----PDLILRL- 348

Query: 332 NRSFVELWEIDLAFLAT-NPSNDELLEFLRSAN--KLPEQLNWKTWKENIFSVYKSSETH 388
           N   + L  I    +    P+   L   L+      L EQ  +   +       +  E  
Sbjct: 349 NSQGICLSSIPGGDVHLCCPAERHLGRSLQEILPPALAEQRLFYVQQALATQTQQRYEYS 408

Query: 389 KDTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            +      G+  H      P      + +  ++T     E       ++Q   ++ + + 
Sbjct: 409 IEVQ----GEVRHEEARIVPLNSQEVLVIVRDITEAKQAELALKAAEQLQRAILEAIPDL 464

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +      G       +F S  +            R++         E   + +  AI T 
Sbjct: 465 IFRLDSQGICL----SFISGGEVLLYGSPDTYVGRSLQELLPPELAERRLFFVQQAIAT- 519

Query: 507 FDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
               R+    ++E+  +    E  I+PL   + ++   +VTD VR+++A+ E  +
Sbjct: 520 --QTRQRYDQSIEIEGETRHEEVRIVPLNPQEVVVIVRDVTDRVRSQQAVQESEQ 572



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 81/303 (26%), Gaps = 11/303 (3%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFH 331
                 V    G    + D+S+++ +   L         +   +   I   D    +   
Sbjct: 169 WIHHQVVPVGDGILITSRDISEQVQIKQALEASELRYRALYEAIPDLIFEIDPEGLILNC 228

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
             S     +    F     + D          +L       T                  
Sbjct: 229 KPSPYVPTQHPPEFCVGRRAQDVFPSSFGEQYQLLAGRALSTQTPQYLEYEMVLPAAAAN 288

Query: 392 WHLPNGQTLHVI-VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
              P  +      V +  R     +  ++T + + E     +   Q   +  + + +   
Sbjct: 289 ESEPAIRRYQKACVVAYGRDRVYVLVRDITKRKEAELALREMEATQRAILQAIPDLILRL 348

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              G I LS+     +          G  ++ I                 A       + 
Sbjct: 349 NSQG-ICLSSIPGGDVHLCCPAERHLGRSLQEILPPALAEQRLFYVQQALATQTQQRYEY 407

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
              +QG +        E  I+PL + + ++   ++T++ +AE AL    +  R   E   
Sbjct: 408 SIEVQGEV-----RHEEARIVPLNSQEVLVIVRDITEAKQAELALKAAEQLQRAILEAIP 462

Query: 571 SFV 573
             +
Sbjct: 463 DLI 465



 Score = 38.0 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQ------TLHVIVTSNPRGGTIWMFENLTVQVD 424
           W  + E    V ++    ++ + + +GQ       +H  V     G  +    +++ QV 
Sbjct: 136 WGGFFEKYKRVVETGIPLEEEFPI-SGQPGLKASWIHHQVVPVGDG-ILITSRDISEQVQ 193

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           ++              + + + +    P+G I    P
Sbjct: 194 IKQALEASELRYRALYEAIPDLIFEIDPEGLILNCKP 230


>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1202

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 137/712 (19%), Positives = 273/712 (38%), Gaps = 69/712 (9%)

Query: 123 HYIKLSKATEKLRKEGQSFDLVAET---QNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
              +LS A E+LR+E    + +  T     +  ++ + + +       +  L  + S LA
Sbjct: 77  SSEELSDANERLRRETARQEQLLSTLRQTANHLLEADQKPTLGEDEASLEQLSDLMSRLA 136

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
              L+  +   H+   K   D    +V   D  G IL+AN  +    +  G    + +G+
Sbjct: 137 ---LERSEFRRHLERQKFALDQH-AIVSITDTKGVILYANDRF---CQISGYTQDEILGQ 189

Query: 240 SRKL-----FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------ 288
           +  L           + M  + A  + +   V      + + Y +   +  F +      
Sbjct: 190 AHNLVNSGYHDSGFFEVMWRTIARGEVWNGEVCNKAK-DGRLYWVSATIVPFLDERGKPI 248

Query: 289 --AGIAIDVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEID 342
               I  D++++  + +++      L +++      +   D   +  F N     L    
Sbjct: 249 QYIAIRTDITRQKALEEKIEDNRRFLQSISDNIGEGVFALDVQGFCTFLNPEAERLLGWT 308

Query: 343 LAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTL 400
              LA    +D +    + A  +P  + +          V Y+S E   D +   +G   
Sbjct: 309 QDELAGRSFHDTV--HYQDAEGMPMNEADCPVHDAVDRGVDYRSDE---DVFIHRDGGIF 363

Query: 401 HVIVTSNP---RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            V ++  P    G   G + +F+N+T    ++ +     +     +D  + G   + P  
Sbjct: 364 PVNISVVPVREDGVVTGAVGVFQNITESKQIQRQLKQSEERLQIALDASNTGFWDWDP-- 421

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
              L + A+ S           G  + N        + E D   +   +    + +RK+ 
Sbjct: 422 ---LQDRAYFSDQWLSMVGYQQGDILNNSTGWLDLLHGE-DLPHVERELEAHLNGQRKNF 477

Query: 515 QGTLELL-----------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +    +            S  V+E         +      +++D  R E  L +      
Sbjct: 478 EVEFRMRHKQGHWVWILSSGRVIE-RDEEKRALRMAGIHKDISDRKRVEDELKKAMLDAE 536

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A+  K+ F+ ++S+E+R+P+  ++G  +LL  ++   L  +Q  ++     S+  LL +
Sbjct: 537 SANRSKSEFLANMSHEIRTPMNGVVGMMELLSNTE---LTPEQQSHMRTARNSAESLLTI 593

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682
           +NDILD + ++AG ++L      L +L+ +V   +A ++    + +   +   L      
Sbjct: 594 INDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQRVDSEKLELLHNAPADLPMQVAG 653

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+   ++ NA+ F+ +G   V +   R + D    +  V++ G  I E +   +
Sbjct: 654 DPTRLRQVLVNLVGNAVKFTPEGEVEVRMTVERQDADTVTVLTEVRDTGIGIDEAVRPRL 713

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  F        RR  G GLGL+I +  + L GG V  SS     +T   RI
Sbjct: 714 FRMFTQADGSTTRRFGGTGLGLAISKQLVELMGGEVGFSSVMGQGSTFWFRI 765


>gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
 gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
          Length = 854

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 119/529 (22%), Positives = 224/529 (42%), Gaps = 41/529 (7%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
            +  ++   L  + EA    D+ ++  +   L          + A+ I D  + L   N+
Sbjct: 7   RRWTELENTLVLYREAE--CDLEEKDRMYRAL------FEQSSDAVIISDGKKVLDI-NK 57

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
              E++     F    P N  L+ F+++   LPE       ++     ++   ++ +  +
Sbjct: 58  KGCEIFG----FGQKRPFNVSLMSFIQAE-YLPE------LQQAFKETFRQGSSNFEMRY 106

Query: 394 L-PNGQTLHVIVT----SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             P G+ + + V              + +++TV  ++E       +     +D+   G+ 
Sbjct: 107 QKPEGEIVDIKVNLSLIDRKDNIVQLVAQDITVSKNIERSEQENRERLKAILDNTLCGIL 166

Query: 449 VFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           +     R I  +NP         +  L        I  TC R  ++    +  A  +   
Sbjct: 167 LIESSSRKIINANPIALKTAGYSDKEL--------IGMTCYRLIDQHGEENCAALSLDQA 218

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRK 564
            D  +S+  T    +  +L  S++P+    T   + +F++++D  +AE  L +   A   
Sbjct: 219 GDLSESILLTATGKTLPILR-SVVPVSIGGTGYFVESFIDLSDRKQAEEELLQAKIAAES 277

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+   + F+  +S+ELR+PLT IIGF++L+     G  +    +++  IS S   LL+L+
Sbjct: 278 ANRSMSEFLATMSHELRTPLTAIIGFSELMLGGSTGEFDELNKKFLGNISTSGKHLLSLI 337

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N ILDL+ ++AG M+L      L D+ +  K  ++    + NI +    +       ADR
Sbjct: 338 NSILDLSKIEAGKMELQSDYFSLQDIFSNTKNILSPLALKKNISMDFNVEPGF-FVYADR 396

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            R  QI   ++SNA+ F+ KG +V +           SV + G  I +D  K +F  F  
Sbjct: 397 TRFKQIMYNLVSNAVKFTQKGGSVEVLGIVSEKGVRVSVSDTGIGISKDEIKQLFKPFKQ 456

Query: 745 NAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  +  G GLGL + + F+ +HGG + + S     +T    +P K
Sbjct: 457 IDSTLSRKYEGTGLGLVLSKKFVEMHGGRIWVESEPGKGSTFTFEVPVK 505


>gi|153869151|ref|ZP_01998829.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS]
 gi|152074304|gb|EDN71172.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS]
          Length = 1630

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 126/691 (18%), Positives = 259/691 (37%), Gaps = 73/691 (10%)

Query: 135  RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
            R  G  F    ET         G+V G         + G   ++         L      
Sbjct: 927  RPNGSVF--WGETNRIPLHDDSGKVVG---------ILGTVEDITARKQAEDALKKANER 975

Query: 195  FKVLFDSLDFLVWHRDQAG-DILWANISYKKNTETEGIVFQKAIGESRKL-------FKE 246
               + DSLD  V+  D    ++L+ N  Y +    +  V  K   ++  +       F  
Sbjct: 976  VTTVLDSLDSAVYVSDMQTYNVLFVNK-YAQKYYNKNDVIGKMCWQTFHIGQTGPCNFCT 1034

Query: 247  EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-----DVS----K 297
              +         + +  E   T+++   + + +      + +  +       D++     
Sbjct: 1035 NAQLITEEGQPTDVHTWEFEDTVQN---RWFYVQDRAIPWDDGRLVRLSVYTDITPRKRA 1091

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
               + ++  + + I  N  V I + +        N  ++E+       L         L+
Sbjct: 1092 LEALREREAYLHAIFENAAVGIMLANAEGNFINCNIKWLEMTGYSCDELYQL----TYLD 1147

Query: 358  FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRG--- 410
                 +    + ++     N    Y      +  +   NG        V V  N +G   
Sbjct: 1148 VTHPNDIEISRQHFGPLTRNAIDSYH----IEKRFVRKNGSFFWADVSVTVIRNQQGIFD 1203

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS----- 465
              + +  ++T +   E             ++  +E +  F PD  +   N A+       
Sbjct: 1204 SVVGVIVDITERKQAEEALRASEARYRGVVEDQTELICRFLPDTTLTFVNHAYCRHLGIQ 1263

Query: 466  ---LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
               +  T+ ++L P    +++ A   +  N+ D   ++   I + +  +   Q +   ++
Sbjct: 1264 REAIIGTKFSKLIPEVARKDVLAHLQQLINQKDSMIVYEHPIETANGHKGWQQWSDRAIT 1323

Query: 523  D---SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            D    +LE   +            ++T+  +AE  L E  EA   A+  K++F+ ++S+E
Sbjct: 1324 DDAGRILEIQAV----------GRDITERKQAEEKLQEAKEAAEAANRAKSAFLANMSHE 1373

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            LR+PL  I+G+  ++   +   L     + +  I  S   LL L+NDILDL+ ++AG ++
Sbjct: 1374 LRTPLNGILGYAQIM--GRDSHLCENYREGIGIIERSGNYLLTLINDILDLSKIEAGKIE 1431

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
            L  +    N  +  + +    +  + +I         L  +  AD +RL QI   +L NA
Sbjct: 1432 LYPTDFYFNQFIQAITEIFQMRAEQKSISFNYQPLSSLPLAVHADEKRLRQILINLLGNA 1491

Query: 699  MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLG 757
            + F+ +G  ++LK   +     F V++ G  I  +   ++F+ F+   +   R  G GLG
Sbjct: 1492 VKFTKQGG-IVLKVGLEKEKIRFQVEDTGIGIATEDLDNIFSPFLQVGNPNYRAEGTGLG 1550

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            LSI +  +++ GG + + S     +     +
Sbjct: 1551 LSITQKLVDMMGGELHVESVLGQGSRFWMVL 1581



 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/427 (12%), Positives = 143/427 (33%), Gaps = 52/427 (12%)

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG- 238
            +   + + L    +  +++ D++  L++ +D     L  N    +  + +     K    
Sbjct: 833  DVAERTRALREQKAFLRLIIDNIPQLIFWKDIHSVFLGCNRRVAQFVQLKNPKEIKGKTD 892

Query: 239  ------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------ 286
                  E  + F+++ + R++ ++  E +  E++ T  +G+    +  R+          
Sbjct: 893  FDLVWKEHAEYFQDQDR-RVMLTNIPEYHTIESI-TRPNGSVFWGETNRIPLHDDSGKVV 950

Query: 287  GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR-YLQFHNRSFVELWEI 341
            G  G   D++      D L    E    +L +L  A+ + D     + F N+   + +  
Sbjct: 951  GILGTVEDITARKQAEDALKKANERVTTVLDSLDSAVYVSDMQTYNVLFVNKYAQKYYNK 1010

Query: 342  D--------LAFLATNPSNDELLEFLRSANKLPEQLNWKTW--KENIFSVYKSSETHKDT 391
            +          F              +   +  +  +  TW  ++ + + +   +     
Sbjct: 1011 NDVIGKMCWQTFHIGQTGPCNFCTNAQLITEEGQPTDVHTWEFEDTVQNRWFYVQDRAIP 1070

Query: 392  WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            W   +G+ + + V           + ++T +                  ++ + G+ +  
Sbjct: 1071 WD--DGRLVRLSV-----------YTDITPRKRALEALREREAYLHAIFENAAVGIMLAN 1117

Query: 452  PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             +G     N  +  +     + L   T++ ++        +      L    I S+  E+
Sbjct: 1118 AEGNFINCNIKWLEMTGYSCDELYQLTYL-DVTHPNDIEISRQHFGPLTRNAIDSYHIEK 1176

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKAD 566
            + ++           + S+  + N Q +        V++T+  +AE AL       R   
Sbjct: 1177 RFVRKNGSFF---WADVSVTVIRNQQGIFDSVVGVIVDITERKQAEEALRASEARYRGVV 1233

Query: 567  EIKNSFV 573
            E +   +
Sbjct: 1234 EDQTELI 1240



 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/427 (13%), Positives = 138/427 (32%), Gaps = 40/427 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E     K L      F++     +  +W  +     ++ +  +K+         
Sbjct: 424 LQQEIDERQQIEKALRASEKRFELAMQGANDGLWDWNLETQEVYFSPRWKEMLGYADHEI 483

Query: 234 QKAIGESRKLFKEEIKKRMISSSAL----EKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
                E  K   +  + + + + A     +    E +  L+H +     ++    +   A
Sbjct: 484 LNHCDEWHKRIHQTERAQTMDNIAAYLDKDIPTYENIHRLQHRHGPYIWVLARGIALWNA 543

Query: 290 --------GIAIDVSKEITVNDQLTHTYEILHN---LT-VAIAIFDQNRYLQFHNRSFVE 337
                   G  +D++++    + L  + E + +   L  + +AI    +     N    +
Sbjct: 544 QGKAIRFVGTHVDLTEQKQAEEALRKSQERIRHFFELPLIGMAITSPTKGWLQVNDKLCD 603

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           L+      +          +  R      +       +  +        T    +   +G
Sbjct: 604 LFGYTRDEI--------FQKEWREITHSDDLAAHLEQRNQLLCGKSDGYTMDKRFIRKDG 655

Query: 398 QT----LHVIVTSNPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            T    L V    N  G     + + +++T +   E       +     ID++ + +   
Sbjct: 656 NTIFTNLSVRCVRNLAGTVDYFVVLIQDITERKQAENLLREKEEFLRLIIDNIPQLIFWK 715

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLS-PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
             +      N AF  L    +  +   G    ++     +  N S+     + I+ +   
Sbjct: 716 EINNVYLGCNKAFAKLLIESKQPVDVVGKTDFDLNLPFDQAQNLSETD---SEIMETDTP 772

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRK 564
           +   ++   +      +E + IPL ++       + T  ++T+  +AE  LTE N+ L +
Sbjct: 773 QYHYVEEIYQSNGKRWVESNKIPLHDSTCQVIGILGTSEDITERKQAELLLTEYNQTLER 832

Query: 565 ADEIKNS 571
               +  
Sbjct: 833 DVAERTR 839


>gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
 gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
          Length = 1078

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 120/615 (19%), Positives = 238/615 (38%), Gaps = 52/615 (8%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           +FD++   V   D    I + N + ++         Q+  G+   +        +   + 
Sbjct: 207 IFDAMPDPVIVLDATDRIRFINKACERLVGHAS---QEVRGKEIDVLFPGGLFPLSLRAH 263

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSF-GEAGIAIDVSKEITVNDQL----THTYEIL 312
           +E+   +  STL      +  I   L    G      D++ E    + L         +L
Sbjct: 264 MERFEIQVGSTLF--EVHATWITDALGRRKGTLFHLSDITAEREAVNTLALRERQYRNVL 321

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            N+TV + + ++   ++  NR   E +             +     +    + P    + 
Sbjct: 322 ENITVGVMLINREYVVRAWNRRMEEWFPGIPWGKEGVRCVEICKGPVLPCEECPLPPVFA 381

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLET 427
           + K     V + +E  +        +   ++ T +        G + + E++T     E 
Sbjct: 382 SGKTQRREVRRHTEEGE--------RIFSMVATPHLDDEGVIRGVVVLLEDVTA----ER 429

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +    ++     ++  ++ +++   D R +  N AF             G  + ++    
Sbjct: 430 RATEGLERYKFMVNASADFMSLISSDFRYEAVNDAFCKAHGRGREDFV-GRRVADL---- 484

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLT---- 541
             +  E+    +   I  +F+ ER  ++      LL +  LE S  P      +      
Sbjct: 485 --WGEETFRGKILPYIRRAFEGERVVVEDRFVFGLLGERDLEVSYNPYREGDRITHVAVV 542

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T    A R L +      +A   K++F+  +S+E+R+PL  I G +DLL  S+   
Sbjct: 543 TRDITSYKDALRRLEDARRQAEEASRAKSAFLASMSHEIRTPLNAITGMSDLLLLSR--- 599

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           ++ +  + +  I  S+  LL L+NDILDL+ ++AG ++L    +   DL+    +    +
Sbjct: 600 VSPEVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQ 659

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARD 715
                +  ++ +S+G       D  R+ QI   +LSNA+ F+ +G  V L          
Sbjct: 660 AETKGLSFELRLSEGLPPVVNGDPVRIRQILINLLSNALKFTEEGG-VTLSVTGHRMYDR 718

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
           + +    V++ G  IP +  + +F  F         +  G GLGLSI      + GG + 
Sbjct: 719 DWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTIV 778

Query: 774 ISSSDEGVTTINCRI 788
           +SS     +T  CRI
Sbjct: 779 VSSEVGRGSTFVCRI 793



 Score = 38.4 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 33/113 (29%), Gaps = 8/113 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR--------LSPGT 478
            + + L   +    D + + V V     RI+  N A   L               L PG 
Sbjct: 195 ARVDVLPAARELIFDAMPDPVIVLDATDRIRFINKACERLVGHASQEVRGKEIDVLFPGG 254

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                       +    G  LF    T   D     +GTL  LSD   E   +
Sbjct: 255 LFPLSLRAHMERFEIQVGSTLFEVHATWITDALGRRKGTLFHLSDITAEREAV 307


>gi|315186738|gb|EFU20496.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 1078

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 119/620 (19%), Positives = 239/620 (38%), Gaps = 62/620 (10%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESRKLFKEEIKKRMI 253
           +FD++   V   D A  I + N + ++         +     A+     LF   ++  M 
Sbjct: 207 IFDAMPDPVIVLDAADRIRFINKACERLVGHTSREVRGKEIDAVFPGG-LFPLSLRAHME 265

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-GEAGIAIDVSKEITVNDQL----THT 308
                  +    V            I   L+   G      D++ E    + L       
Sbjct: 266 QFEIQVGSTLFEVHAT--------WITDALDRRKGTLFHLSDITAEREAVNTLALRERQY 317

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLPE 367
             +L N+TV + + +++  ++  NR   E W   +++        E+ +  +    + P 
Sbjct: 318 RNVLENITVGVMLLNRDYVVRAWNRRMEE-WFPGISWGTEGVRCVEICKGPVLPCEECPL 376

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQ 422
              + + K     V + ++  +        +   ++ T +        G + + E++T +
Sbjct: 377 PPVFASGKTQRAEVRRQTKYGE--------RIFSMVATPHLDDEGVIRGVVVLLEDVTAE 428

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                +    ++     ++  ++ +++   D R +  N AF             G  +  
Sbjct: 429 RKATEE----LERYKFMVNASADFMSLISSDFRYEAVNDAFCKAHGKGREDFV-GHRVAE 483

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTML 540
           +      +  E+    +   I  +F+ ER  ++      LL +  LE S  P    + + 
Sbjct: 484 L------WGEETFRRKILPYIQRAFEGERVVVEDRFVFGLLGERDLEVSYNPYREGERIT 537

Query: 541 T----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  ++T    A R L +      +A+  K++F+  +S+E+R+PL  I G +DLL  
Sbjct: 538 HVAVVTRDITSYKDALRHLEDARRQAEEANRAKSAFLASMSHEIRTPLNAITGMSDLLLL 597

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S+   ++ +  + +  I  S+  LL L+NDILDL+ ++AG ++L    +   DL+    +
Sbjct: 598 SR---VSPEVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWE 654

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712
               +     +  ++     L      D  R+ QI   +LSNA+ F+ +G  V L     
Sbjct: 655 MFRPQAETKGLSFELHLSEGLPSEVNGDPVRIRQILINLLSNALKFTEEGG-VTLSVTGH 713

Query: 713 --ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
                + +    V++ G  IP +  + +F  F         +  G GLGLSI      + 
Sbjct: 714 RMYDRDWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQLAEMM 773

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG V +SS     +T  CR+
Sbjct: 774 GGTVVVSSEVGRGSTFVCRL 793



 Score = 38.0 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 10/114 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--- 483
            + + L   +    D + + V V     RI+  N A   L       +  G  I  +   
Sbjct: 195 ARVDVLPAARELIFDAMPDPVIVLDAADRIRFINKACERLVGHTSREVR-GKEIDAVFPG 253

Query: 484 ------AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                        +    G  LF    T   D     +GTL  LSD   E   +
Sbjct: 254 GLFPLSLRAHMEQFEIQVGSTLFEVHATWITDALDRRKGTLFHLSDITAEREAV 307


>gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1104

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 105/526 (19%), Positives = 205/526 (38%), Gaps = 30/526 (5%)

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
             +    + G+  +  K    ND L +    + +    IA+   ++ ++F N ++  +  
Sbjct: 171 EAIREEIQDGLNQEREKLKEANDTLQYLKTAIDHSVDGIAVAGSDKRIKFANPAWASMHG 230

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQT 399
           +    +    +       +  +    E       K     V      + +  H   +G  
Sbjct: 231 LTQKEVEGAHA------RIFHSTAQYENEVAPFLK----RVASKGSNYGEMGHVRKDGTE 280

Query: 400 LH-------VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
                    +        G + + ++++ +   E       +     ++   + V V+  
Sbjct: 281 FPCWMSISLIRGEGEDPTGVVAVAKDISERKAAEAALIASEERNRALLEATPDAVTVYDK 340

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           D ++   NPAF  L+      +       +   +  R   +     +        + +R 
Sbjct: 341 DAKVIYVNPAFEQLFGWTAEEVLGKP--LDFVPSEERPKTDELIARMRKGESVLEEIKRY 398

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           +  G L  +  S   +         T++   ++TD  +AE AL +  +    A+  K+ F
Sbjct: 399 TKDGRLLYIRASASMFWDKDRHFLGTVVISRDITDRKKAEEALRKAKKDAETANIAKSQF 458

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           V ++S+E+R+P+  +IG T LL  +    L+ +Q ++ E I +S+  LL ++NDILD + 
Sbjct: 459 VANMSHEIRTPMNGVIGMTGLLLDT---DLDERQREFAETIQSSAANLLTVINDILDFSK 515

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIF 691
           ++A  ++L      L   L +V   +A K    N+    + D  + S  V D  RL Q+ 
Sbjct: 516 IEADKLELESIGFDLRFTLEDVSDLLAIKAQAKNLEFVCMVDPDVPSLLVGDPGRLRQLI 575

Query: 692 SKILSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             I +NA+ F+ +G  V+         D     F++ + G  IPED    +F  F     
Sbjct: 576 INICNNAIKFTREGEVVVRVVGEEIKEDKAYLRFTITDTGIGIPEDKQNDLFAPFTQMDA 635

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              R   G GLGLSI +  + L  G + +SS      T    +P +
Sbjct: 636 STTREYGGTGLGLSICKRLVQLMNGEIGVSSRPGEGATFWFSLPFQ 681



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 94/281 (33%), Gaps = 37/281 (13%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA---IG 238
             K K+ ++ +   K   D     +        I +AN ++           + A   I 
Sbjct: 185 REKLKEANDTLQYLKTAIDHSVDGIAVAGSDKRIKFANPAWASMHGLTQKEVEGAHARIF 244

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--SYKIVRVLNSF----GEAGIA 292
            S   ++ E+   +   ++   N+ E     + G        I  +        G   +A
Sbjct: 245 HSTAQYENEVAPFLKRVASKGSNYGEMGHVRKDGTEFPCWMSISLIRGEGEDPTGVVAVA 304

Query: 293 IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEI------- 341
            D+S+       L  + E    +L     A+ ++D++  + + N +F +L+         
Sbjct: 305 KDISERKAAEAALIASEERNRALLEATPDAVTVYDKDAKVIYVNPAFEQLFGWTAEEVLG 364

Query: 342 -DLAFLAT--NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             L F+ +   P  DEL+  +R    + E++   T    +  +  S+    D       +
Sbjct: 365 KPLDFVPSEERPKTDELIARMRKGESVLEEIKRYTKDGRLLYIRASASMFWD-------K 417

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             H +       GT+ +  ++T +   E       K     
Sbjct: 418 DRHFL-------GTVVISRDITDRKKAEEALRKAKKDAETA 451



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 104/352 (29%), Gaps = 50/352 (14%)

Query: 4   GMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLS 63
            +A   I    E    F   +A+      + L +++        R  +   +N+    L 
Sbjct: 130 CLAAAIIIPPAEFTGAFPYPLAIKTRFLIVFLFSLVTANRYEAIREEIQDGLNQEREKLK 189

Query: 64  EICDQLSKYHSLLT-ENNCLTIV------------WDG--KDETPEIIGQLHQ-RIDIPQ 107
           E  D L    + +    + + +             W         E+ G   +      Q
Sbjct: 190 EANDTLQYLKTAIDHSVDGIAVAGSDKRIKFANPAWASMHGLTQKEVEGAHARIFHSTAQ 249

Query: 108 TDTDLLSFENWLKFH--HYIKLSKATEKLRKEGQSFD--LVAETQNDCAIKIEGRVSGSC 163
            + ++  F   +     +Y ++      +RK+G  F   +             G V+   
Sbjct: 250 YENEVAPFLKRVASKGSNYGEMGH----VRKDGTEFPCWMSISLIRGEGEDPTGVVA--- 302

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
                     +  +++E       L       + L ++    V   D+   +++ N +++
Sbjct: 303 ----------VAKDISERKAAEAALIASEERNRALLEATPDAVTVYDKDAKVIYVNPAFE 352

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKR----MISSSALEKNFCETVSTLEHGNNKSYKI 279
           +     G   ++ +G+       E + +    +      E    E     + G     + 
Sbjct: 353 QLF---GWTAEEVLGKPLDFVPSEERPKTDELIARMRKGESVLEEIKRYTKDGRLLYIRA 409

Query: 280 VRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN 325
              +      +  G   I+ D++      + L    +      +A + F  N
Sbjct: 410 SASMFWDKDRHFLGTVVISRDITDRKKAEEALRKAKKDAETANIAKSQFVAN 461


>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1069

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 186/515 (36%), Gaps = 32/515 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELL 356
           E            +  N +  I        L   N +   ++       L +  S+  L 
Sbjct: 52  ERGRAAAEEGYRSVFENASEGIFRSTPEGRLLAANPAMARMFGYRSPEELVSEVSD--LG 109

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNPRGGTI 413
             L  + +  E+   +  +E   S +++    +D    W   NG    V           
Sbjct: 110 RQLWESPQERERFVRRVLEEGSVSGFEARMRRRDGSLLWASLNGH--RVTGRDGRLVCLE 167

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               ++T +   +       +   +  +   + + V   +G I   N             
Sbjct: 168 GTILDITWRRRQQEALEESQRQFRDLFERSVDALLVHDGEGNIVDCNAEACRSLGYTRQE 227

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSI 530
           L              R         L+   ++        +        D     +E  +
Sbjct: 228 LLRMNVRDFATNLLRREDRTPGEPTLWERALSGEPGVVAGVHLGEHRRRDGTTFPVEVRV 287

Query: 531 IPLPNAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            P+      +      ++T+  R E  L E  E    A   K+ FV ++S+E+R+P+  +
Sbjct: 288 GPVVYGGRRMILAAARDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGV 347

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG  +LL  +    L  +Q +Y   I +S   LL ++NDILD + ++AG + L      +
Sbjct: 348 IGMAELLLDT---PLTPEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEI 404

Query: 648 NDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  + EV   +A + H   + +   I  G       D  RL Q+ + ++ NA+ F+ +G 
Sbjct: 405 HKEVEEVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGE 464

Query: 707 TVI-LKAARDNG-----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
            V+ +  +++             +  F VK++G  I E+  K +F  F        RR  
Sbjct: 465 VVVSVSLSKEEKSAPAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYG 524

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           G GLGL+I    + + GG + + SS +  +T +  
Sbjct: 525 GTGLGLAISRQLVEMMGGEIGLKSSPKEGSTFHFS 559



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 98/311 (31%), Gaps = 42/311 (13%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIR-QRNSLAKKV--NETYSFLSEICDQLSKYHSLLTENN 80
           I     +  +    +  +  L R +R   A +      +   SE   + +    LL  N 
Sbjct: 28  IMTAANVIVVSAIMLWGVRALGRLERGRAAAEEGYRSVFENASEGIFRSTPEGRLLAANP 87

Query: 81  C--LTIVWDGKDETPEIIGQLHQRI-DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137
                  +   +E    +  L +++ + PQ     +     L+              R++
Sbjct: 88  AMARMFGYRSPEELVSEVSDLGRQLWESPQERERFVR--RVLEEGSVSGFEARMR--RRD 143

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           G    L+  + N    ++ GR        R++ L+G   ++     + + L      F+ 
Sbjct: 144 G---SLLWASLNGH--RVTGRDG------RLVCLEGTILDITWRRRQQEALEESQRQFRD 192

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           LF+     +   D  G+I+  N    +   + G   Q+ +  + + F   + +R   +  
Sbjct: 193 LFERSVDALLVHDGEGNIVDCNA---EACRSLGYTRQELLRMNVRDFATNLLRREDRTPG 249

Query: 258 LEKNFCETVS-------TLEHGNNKSYKIVRVLNSF-----------GEAGIAIDVSKEI 299
               +   +S        +  G ++                           A D+++  
Sbjct: 250 EPTLWERALSGEPGVVAGVHLGEHRRRDGTTFPVEVRVGPVVYGGRRMILAAARDITERK 309

Query: 300 TVNDQLTHTYE 310
            + ++L    E
Sbjct: 310 RIEEELREAKE 320



 Score = 41.1 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            LE       +      ++ SEG+    P+GR+  +NPA   ++       SP   +  +
Sbjct: 50  RLERGRAAAEEGYRSVFENASEGIFRSTPEGRLLAANPAMARMFGYR----SPEELVSEV 105

Query: 484 AATCSRYYNESDGWDLFAAI------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +    + +      + F         ++ F+   +   G+L   S +    +        
Sbjct: 106 SDLGRQLWESPQERERFVRRVLEEGSVSGFEARMRRRDGSLLWASLNGHRVTGRDGRLVC 165

Query: 538 TMLTFVNVTDSVRAERALTEKNEA 561
              T +++T   R + AL E    
Sbjct: 166 LEGTILDITWRRRQQEALEESQRQ 189


>gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 928

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/520 (21%), Positives = 206/520 (39%), Gaps = 49/520 (9%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL------L 356
           + L    E L     +I   D+   +   N  F  +W +D   L  + +          L
Sbjct: 9   EFLKALVEALE---DSILAADKFGRIMVCNDRFRAMWNLDDPALLGSDTAAFFDSITAQL 65

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGT 412
           +   S    PE            +     +       L +G+ + +   +      + G 
Sbjct: 66  DGCASGKVYPEDF--------APNTGDGEKAAPVVLSLKDGRVIEIRTAALFPGAGQDGR 117

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +W+F ++T     E      ++   + I+ L E   +   DG I + N A   + + ++ 
Sbjct: 118 LWIFRDVTATRQRERYLQDSIRQLTDIIEFLPEPTMIVDKDGIIVVWNKAIEDVTEVKKE 177

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAII----TSFDDERKSLQGTLELLS-----D 523
            +    +        +        W L   +     T    + + L G +   +      
Sbjct: 178 AIVGKGNYEYALPFYNERRPILIDWVLDDRVPIEQYTFVQRKGEMLFGEIYTPNAFGGKG 237

Query: 524 SVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + L     PL ++       +    NVT+    E+ L     A   A   K+ F+  +S+
Sbjct: 238 AYLWGVAAPLKDSSGNIVGAVECMRNVTERKMVEQELHRAKLAAEAATRAKSEFLARMSH 297

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+ +I+G ++LL+ +   SL+  Q  YV+ + +S  +LL ++NDILD + ++AG +
Sbjct: 298 EIRTPMNSILGMSELLEET---SLDFDQKNYVQTLHSSGEMLLAIINDILDFSKIEAGQV 354

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSN 697
            L      L DL+  + + +  K  E  +++   ++       + D  RL QI   +LSN
Sbjct: 355 DLECVPFDLIDLVEGIGRILGLKAQEKGLKLTCWVAPEVHRHVLGDPTRLQQILINLLSN 414

Query: 698 AMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
           A+ F+  G  V L         D    + +V + G  IP+D  +SVF  F        R 
Sbjct: 415 AIKFTEHGE-VTLHILPGPLPADKETILVTVSDTGIGIPKDKQESVFESFSQADTSTTRK 473

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI--NCRI 788
             G GLGL+I +  I L  G + I S++   TT     R+
Sbjct: 474 FGGTGLGLAISKKLIELMDGGIRIESNEGAGTTFLLTVRL 513



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 89/274 (32%), Gaps = 39/274 (14%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
              K L ++L+  +   D+ G I+  N  ++     +       +G     F + I  ++
Sbjct: 9   EFLKALVEALEDSILAADKFGRIMVCNDRFRAMWNLDDPAL---LGSDTAAFFDSITAQL 65

Query: 253 -------------ISSSALEKNFCETVSTLEHG---NNKSYKIVRVLNSFGEAGIAIDVS 296
                          ++   +     V +L+ G     ++  +       G   I  DV+
Sbjct: 66  DGCASGKVYPEDFAPNTGDGEKAAPVVLSLKDGRVIEIRTAALFPGAGQDGRLWIFRDVT 125

Query: 297 K----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
                E  + D +    +I+  L     I D++  +   N++  ++ E+    +    + 
Sbjct: 126 ATRQRERYLQDSIRQLTDIIEFLPEPTMIVDKDGIIVVWNKAIEDVTEVKKEAIVGKGNY 185

Query: 353 DELLEFLRSANKLPEQLNW----KTWKENIFSVYKSSETHKDTWHLPN-----GQTLHVI 403
           +  L F       P  ++W    +   E    V +  E      + PN     G  L  +
Sbjct: 186 EYALPFYNERR--PILIDWVLDDRVPIEQYTFVQRKGEMLFGEIYTPNAFGGKGAYLWGV 243

Query: 404 VTSNPRG-----GTIWMFENLTVQVDLETKYNTL 432
                       G +    N+T +  +E + +  
Sbjct: 244 AAPLKDSSGNIVGAVECMRNVTERKMVEQELHRA 277


>gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1442

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 129/676 (19%), Positives = 248/676 (36%), Gaps = 69/676 (10%)

Query: 152  AIKIEGRVSGSCAFLRILSLD-----GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
            +I+++G V    A  RI+ L+      I  ++ E       L     V + + +++  L+
Sbjct: 400  SIEVQGEVRYEEA--RIVPLNSQEVLAIVRDITEAKQAELALKAAEQVQRAILEAIPDLI 457

Query: 207  WHRDQAGD-ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR----MISSSALEKN 261
            +  D  G  + +    +                  ++L   E+ +R    +  + A +  
Sbjct: 458  FRLDSQGICLSFV---WGGEVVPYSSPDTYVGRSLQELLPPELAERRLFFVQQAIATQTR 514

Query: 262  FCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLT 316
                 S    G  +  ++ +  LN      I  DV+     +  V +       +  N  
Sbjct: 515  QRYDQSIEIQGETRHEEVRIVPLNPQEVVVIVRDVTDRVRSQQAVQESEQKFRALFENAA 574

Query: 317  VAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            VAI I       +   N   +  +                LE LR+ +   +    +  +
Sbjct: 575  VAILIRHAETGEILEANSQAISAYGFSS------------LEELRAFDASEQSPYRRALR 622

Query: 376  ENIFSVYKSSETHKDT--------WHLPNGQTLH--VIVTSNPRGGT---IWMFENLTVQ 422
               FS+    E  +          W   +G+ +   V V      G    ++   ++T +
Sbjct: 623  GGEFSLQSYLEQARQQGSARFEWHWQRQDGRVVWEDVFVQPLVLRGIPCWVFTAVDITAR 682

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               E     L +     +D L     +    G  +  N A+ +        L     +  
Sbjct: 683  KSAEA---ELEQFFSVALDLL----CIADAQGYFRRLNRAWETTLGYSLQELQSRPFLEW 735

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            +          +    +    +  F +  ++  G+   +           L  +      
Sbjct: 736  VHPEDVPATQAAMQQLIEEKRLDHFVNRYRTQDGSYRFIEWRA------SLAGSLFYAAG 789

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             ++T +  AE  +    EA   A   K+ F+  +S+E+R+P+  I+G T LL  +   SL
Sbjct: 790  RDITVAKLAEEQMKAAKEAAEAASRAKSEFLATISHEIRTPINAILGMTSLLLDT---SL 846

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +Q  +V+ I     +LLNL+NDILD + +++  ++L      L  L+ E+   +A + 
Sbjct: 847  DPQQQDWVQTIRYGGEVLLNLINDILDFSKIESQKLELEEIPFSLPQLVEELLDLMAAQA 906

Query: 663  HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAAR---DNG 717
               ++ +    D  L  + + D  RL QI + +LSNA+ F+ +G  V  ++A     +  
Sbjct: 907  QSKDLELVAWVDPSLPPTLIGDPNRLRQILANLLSNAIKFTPQGEVVVTVEAGERDPEKQ 966

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
                 V++ G  IP +    +F  F         Q  G GLGL+I +    L GG + + 
Sbjct: 967  WVNVQVRDTGIGIPPEKLDRLFKPFSQVDSSISRQFGGTGLGLAISQRLCQLMGGAIGVE 1026

Query: 776  SSDEGVTTINCRIPSK 791
            S     +T   RIP K
Sbjct: 1027 SQPGQGSTFRFRIPLK 1042



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/393 (12%), Positives = 123/393 (31%), Gaps = 22/393 (5%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-YKKNTETE----G 230
            +++E     + L    S ++ L++++  L++     G IL    S Y           G
Sbjct: 186 RDISERVKMERALQESESRYRALYEAIPDLIFELSAEGVILHCKPSPYVPTRHPPEFYVG 245

Query: 231 IVFQKAI-GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
              Q    G  ++ +    +  ++S +     +   +        ++   V         
Sbjct: 246 CRAQDVFTGSLKEQYPSLAEGALVSQTPQYLEYEVEIEPGIRCYRRA--CVVAHGRDKVY 303

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +  D+++       L         +  AI        +   NR  + L  I    +  +
Sbjct: 304 ILVRDITERKQAELALREMEATQRAILQAIP-----DLIVRLNRQGICLSFISGGDVHLD 358

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-HVIVTSNP 408
              +  L         P     + +        ++ + ++ +  +          +    
Sbjct: 359 CPAERHLGRSLQEILPPALAEQRLFYVQQALATQTQQRYEYSIEVQGEVRYEEARIVPLN 418

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               + +  ++T     E       +VQ   ++ + + +      G       +F    +
Sbjct: 419 SQEVLAIVRDITEAKQAELALKAAEQVQRAILEAIPDLIFRLDSQGICL----SFVWGGE 474

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLE 527
                       R++         E   + +  AI T     R+    ++E+  +    E
Sbjct: 475 VVPYSSPDTYVGRSLQELLPPELAERRLFFVQQAIAT---QTRQRYDQSIEIQGETRHEE 531

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             I+PL   + ++   +VTD VR+++A+ E  +
Sbjct: 532 VRIVPLNPQEVVVIVRDVTDRVRSQQAVQESEQ 564



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 84/304 (27%), Gaps = 21/304 (6%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFH 331
                 V    G    + D+S+ + +   L         +   +   I        +   
Sbjct: 169 WIHHQVVPVGDGILITSRDISERVKMERALQESESRYRALYEAIPDLIFELSAEGVILHC 228

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
             S          F     + D     L+          + +  E             + 
Sbjct: 229 KPSPYVPTRHPPEFYVGCRAQDVFTGSLKEQ--------YPSLAEGALVSQTPQYLEYEV 280

Query: 392 WHLPNGQTLHVI-VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
              P  +      V ++ R     +  ++T +   E     +   Q   +  + + +   
Sbjct: 281 EIEPGIRCYRRACVVAHGRDKVYILVRDITERKQAELALREMEATQRAILQAIPDLIVRL 340

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              G       +F S      +  +     R++         E     LF          
Sbjct: 341 NRQGICL----SFISGGDVHLDCPAERHLGRSLQEILPPALAE---QRLFYVQQALATQT 393

Query: 511 RKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           ++  + ++E+  +    E  I+PL + + +    ++T++ +AE AL    +  R   E  
Sbjct: 394 QQRYEYSIEVQGEVRYEEARIVPLNSQEVLAIVRDITEAKQAELALKAAEQVQRAILEAI 453

Query: 570 NSFV 573
              +
Sbjct: 454 PDLI 457


>gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
 gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
          Length = 1034

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 121/649 (18%), Positives = 259/649 (39%), Gaps = 67/649 (10%)

Query: 179  AETTLKCKKLSNHISVF-KVLFDSLDFLVWHRDQAGDILWANISYKKNT----ETEGIVF 233
             E   K  +   HI +  + + D +       D  G   + + S+++      E  G   
Sbjct: 409  IEMEKKRDQYEAHIRLMTRNMNDVIIEA----DVEGRYTYISPSHQRVLGRGKELLGKNC 464

Query: 234  QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
             K +      F   I K+++ +   +      +   +            ++  G+  + I
Sbjct: 465  MKDLHPDDIDFVASIFKKIVETGEQQHAEYRYLHPDKGYIWLGSVATSYVDENGQKRVLI 524

Query: 294  ---DVSKEITVNDQLTHTYEILHNLTVA-------IAIFDQNR-YLQFHNRSFVELWEID 342
               DV++     +++    E    +          I + D N      +NR+        
Sbjct: 525  NTRDVTERKENEEEIKKLTEEYQTVFQGTQDSMFLIEVTDDNEFRYMRNNRAHQVSTGFT 584

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS------SETHKDTWHLPN 396
             A+                  K P++L  K   + + + YK       + ++++T   P 
Sbjct: 585  SAYF---------------RGKTPQELAGKKTGDQLSANYKRCIDSNDTVSYEETLEFPA 629

Query: 397  G-QTLHVIVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            G +     +T   + G     +   +++T ++  E +     +     +++L+E V    
Sbjct: 630  GTRMWQTALTPIFQHGEVRYIVGSSQDITGRIKAENELRQSKQKYQSLVENLNEIVYTLD 689

Query: 452  PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             +  +    P   ++   +   +     +  +     R        + F  +++   DE 
Sbjct: 690  QNATVTYVTPNIENISGYKPEEVIGKNFVEFVHPDDIR-----GRMEQFRKVLSGI-DEP 743

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKA-- 565
               +   +      +  +  P+     ++      +++TD  +AE+ L +      +   
Sbjct: 744  SEYRFLTKSGDTVWVRTNAKPIIKDDKIVGIQGLLMDITDVKKAEKQLEDAVLRANEMAI 803

Query: 566  -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                 ++ K+ F+ ++S+ELR+PL ++IGF+D+L     G LN  Q +Y+  IS     L
Sbjct: 804  QAEYANKTKSQFLANMSHELRTPLNSVIGFSDILLKEIKGELNDSQKKYISNISNGGRHL 863

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            L+L+NDILDL+ ++AG M+L    + L+ + +E++  I+ +  + +I +++     +   
Sbjct: 864  LDLINDILDLSKIEAGKMELACEDLNLDSVFSEIESVISPQAQKKSIDLEISKPADI-EI 922

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD+ ++ QI   +LSNA+ F+ +   V + A   D      +VK+ G  IPED    +F
Sbjct: 923  NADKSKIKQIIFNLLSNAIKFTDENGKVSMSAGEVDRDQVEITVKDTGIGIPEDKLDKIF 982

Query: 740  NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + F+       R   G GLGL +V+ ++ +HGG + + S     +    
Sbjct: 983  DPFMQADSSTSRKYGGTGLGLPLVKEYVEMHGGEILVESEVGKGSVFTL 1031


>gi|260461547|ref|ZP_05809794.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259032617|gb|EEW33881.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 1255

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 125/660 (18%), Positives = 248/660 (37%), Gaps = 58/660 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET------EG 230
           ++ +   +  +  +       + +SL   V   D+    ++AN   + +          G
Sbjct: 287 DVTDMKGRETEAEDARKNLATVLESLPAGVIIYDRDDKFVFANRKLQDSLPALKPYWQPG 346

Query: 231 IVFQKAIGES-------------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
             F++A+                         +R +           +     + + + Y
Sbjct: 347 RTFREALEFGHSVGYFRSSGDAVVDSLYAVDTERWLDGMLRRYRLPNSSYERLNADGRWY 406

Query: 278 KIVRVLNSFGE-AGIAIDVS----KEITVNDQLTHT---YEILHNLTVAIAIFDQNRYLQ 329
           ++  +    G   G+ +D+S    +E  + D +        ++  L VA  I  Q+  ++
Sbjct: 407 QVYDMRTDDGTFIGVRVDISDLKSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLNIE 466

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           F N+++  L  +    +                 +     +            +   TH+
Sbjct: 467 FVNKAWCALTGLAKEDVIGRTDRQLFG---AEEAEGFSHDDADVVATGNVREVEEPVTHR 523

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEG 446
           D            +V S+     +    ++T     E      ++   V    ID++   
Sbjct: 524 DGTVRQLMTRKSRLVASDGSVHLVGSSTDITDVKARERALEESMRENEVFRSLIDNVPVS 583

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +     D R    N  +  L    +           I  T    +       +   +   
Sbjct: 584 IYAKRSDLRQFYVNKGWCDLTGLGKE--------EAIGKTDVEIFGPDGEAFVAGDLAVL 635

Query: 507 FDDERKSLQGTLELLSDSVLE------YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              E + ++ T+ L   SV          I    +   + +  ++T+    E  L E  +
Sbjct: 636 RTGETQEIEETVTLADGSVRHQFARKGAMIASDGSLYLIGSTTDITELKMREAELREARQ 695

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               AD  K+ F+ ++S+E+R+P+  ++G  +LL  S   +L+ KQ  + + I  S   L
Sbjct: 696 RAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS---NLDPKQKTFTDIIVKSGNAL 752

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
           L ++NDILD + +DAG + L+ +   L + + +V   ++T+  E ++ + V  + +LGS 
Sbjct: 753 LTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRIEPRLGSL 812

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGDFIFSVKNNGSSIPEDMCK 736
           F+ D  R+ QI + +L NA+ F+ +G   V +   R         SV + G  IPE+  K
Sbjct: 813 FIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERMPTGTKLTISVTDTGIGIPEEKLK 872

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRIPSKE 792
            VF +F        RR  G GLGL+I    + L GG + + S++   +T      +PS E
Sbjct: 873 LVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGKIGVESAEGKGSTFWFEVTLPSAE 932



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/430 (13%), Positives = 132/430 (30%), Gaps = 48/430 (11%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
                +     + L ++    +W  D      W +  Y+  T   GI     +G  R  F
Sbjct: 29  HTADMDRAEGLRQLVEAGSDWIWETDAELRFSWLSQGYQAAT---GIDPADVLGRFRFDF 85

Query: 245 KEEIKKRMISSSALEKNFCETVSTLE--------HGNNKS-----YKIVRVLNSF-GEAG 290
             ++ K   S++A  ++        +          + +      +        F G  G
Sbjct: 86  LNQVLKGNRSAAAHLEDLQARRPFRDFVYELKGGGADCRWVLTSGFPRFDSEGKFAGYRG 145

Query: 291 IAIDVSKEITVNDQLT-------------HTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           I  +++      +++              +   ++ ++ + + +   +   +  N +F +
Sbjct: 146 IGRNITALAAAFEEMAPKQDEDVSSQSLVNLRTMVDSMPIGVVVLGADMRAEVINSAFHD 205

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHL 394
            W ID        S  EL+E  R+    P   +   W+ ++       ++          
Sbjct: 206 FWRIDPNRAGIGSSFRELMEASRA--IDPFGADETAWQRHVAEREAEIRAGVAGSRQLPH 263

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            +G+TL   + S   G  +  + ++T     ET+     K     ++ L  GV ++  D 
Sbjct: 264 NDGRTLVASLASLAGGKRLISYVDVTDMKGRETEAEDARKNLATVLESLPAGVIIYDRDD 323

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +   +N   +      +    PG   R                D     + + D ER  L
Sbjct: 324 KFVFANRKLQDSLPALKPYWQPGRTFREALEFGHSVGYFRSSGDAVVDSLYAVDTER-WL 382

Query: 515 QGTLELL------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            G L                    +   +   +   +   V+++D    E AL +    +
Sbjct: 383 DGMLRRYRLPNSSYERLNADGRWYQVYDMRTDDGTFIGVRVDISDLKSREAALRDSMRQI 442

Query: 563 RKADEIKNSF 572
                + +  
Sbjct: 443 DLFRHVMDEL 452



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/461 (14%), Positives = 145/461 (31%), Gaps = 35/461 (7%)

Query: 145 AETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
             T        EG+ +G     R ++      E           S  +   + + DS+  
Sbjct: 126 VLTSGFPRFDSEGKFAGYRGIGRNITALAAAFEEMAPKQDEDVSSQSLVNLRTMVDSMPI 185

Query: 205 LVWHRDQAGDILWANISYKK------NTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            V            N ++        N    G  F++ +  SR +      +        
Sbjct: 186 GVVVLGADMRAEVINSAFHDFWRIDPNRAGIGSSFRELMEASRAIDPFGADETAWQRHVA 245

Query: 259 EKNFCETVST-----LEHGNNKSYKIVRVLNSFGEAGIA-IDVS----KEITVNDQLTHT 308
           E+             L H + ++        + G+  I+ +DV+    +E    D   + 
Sbjct: 246 EREAEIRAGVAGSRQLPHNDGRTLVASLASLAGGKRLISYVDVTDMKGRETEAEDARKNL 305

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE- 367
             +L +L   + I+D++    F NR   +       +     +  E LEF  S       
Sbjct: 306 ATVLESLPAGVIIYDRDDKFVFANRKLQDSLPALKPYWQPGRTFREALEFGHSVGYFRSS 365

Query: 368 ---------QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
                     ++ + W + +   Y+   +  +  +  +G+   V       G  I +  +
Sbjct: 366 GDAVVDSLYAVDTERWLDGMLRRYRLPNSSYERLN-ADGRWYQVYDMRTDDGTFIGVRVD 424

Query: 419 LTVQVDLETKYN---TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           ++     E         + +    +D L     +   D  I+  N A+ +L    +  + 
Sbjct: 425 ISDLKSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLNIEFVNKAWCALTGLAKEDVI 484

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             T  +   A  +  ++  D   +    +   ++      GT+  L             +
Sbjct: 485 GRTDRQLFGAEEAEGFSHDDADVVATGNVREVEEPVTHRDGTVRQLMTRKSRLVASD-GS 543

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              + +  ++TD    ERAL    E   + +E+  S + +V
Sbjct: 544 VHLVGSSTDITDVKARERAL----EESMRENEVFRSLIDNV 580



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 100/311 (32%), Gaps = 51/311 (16%)

Query: 173 GIYSELAETTLKCKKLSN---HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           G+  ++++   +   L +    I +F+ + D L    + + Q  +I + N ++       
Sbjct: 420 GVRVDISDLKSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLNIEFVNKAW---CALT 476

Query: 230 GIVFQKAIGESRKLF-----------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           G+  +  IG + +              +       +   +E+       T+     +  +
Sbjct: 477 GLAKEDVIGRTDRQLFGAEEAEGFSHDDADVVATGNVREVEEPVTHRDGTVRQLMTRKSR 536

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTH-------TYEILHNLTVAIAIFDQNRYLQFH 331
           +V    S    G + D++        L            ++ N+ V+I     +    + 
Sbjct: 537 LVASDGSVHLVGSSTDITDVKARERALEESMRENEVFRSLIDNVPVSIYAKRSDLRQFYV 596

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--K 389
           N+ + +L  +           +                + + +     +V ++ ET   +
Sbjct: 597 NKGWCDLTGLGKEEAIGKTDVEIFG------------PDGEAFVAGDLAVLRTGETQEIE 644

Query: 390 DTWHLPNGQTLHVIVT---SNPRGGTIWMF---ENLTVQVDLETKYNTLVKV-------Q 436
           +T  L +G   H            G++++     ++T     E +     +        +
Sbjct: 645 ETVTLADGSVRHQFARKGAMIASDGSLYLIGSTTDITELKMREAELREARQRAVLADRAK 704

Query: 437 GETIDHLSEGV 447
            E + ++S  +
Sbjct: 705 SEFLANMSHEI 715



 Score = 42.2 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 58/181 (32%), Gaps = 14/181 (7%)

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN---HISVFKVL 198
           +     ++    ++  R S   A    + L G  +++ +   + + L        VF+ L
Sbjct: 517 EEPVTHRDGTVRQLMTRKSRLVASDGSVHLVGSSTDITDVKARERALEESMRENEVFRSL 576

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMI 253
            D++   ++ +       + N  +   T     E  G    +  G   + F        +
Sbjct: 577 IDNVPVSIYAKRSDLRQFYVNKGWCDLTGLGKEEAIGKTDVEIFGPDGEAF--VAGDLAV 634

Query: 254 SSSALEKNFCETVSTLEHGNNKSY----KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
             +   +   ETV+  +      +     ++    S    G   D+++      +L    
Sbjct: 635 LRTGETQEIEETVTLADGSVRHQFARKGAMIASDGSLYLIGSTTDITELKMREAELREAR 694

Query: 310 E 310
           +
Sbjct: 695 Q 695


>gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 754

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 106/536 (19%), Positives = 236/536 (44%), Gaps = 51/536 (9%)

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
                GI IDV++     + L  +      I  N  + I  FD+N  +   N + +++ +
Sbjct: 241 PAYYQGIIIDVTERKKAEEALRKSERKYRLIFENSPLGIFDFDENGVVTSGNENMLKILD 300

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQ 398
           +         + DEL+ F      +P+ L  +  K+ ++ V++    H + ++    + +
Sbjct: 301 L---------TRDELIGF-----DMPKSLEDEDMKKALYQVFQKKTGHYEGYYRSPTSNK 346

Query: 399 TLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           T+ + V  +P         G + + E++T +   E       K      ++ ++ + +  
Sbjct: 347 TVPLKVDFSPIISEEGTIQGGVGIVEDITERKQAEEALKESEKKFRSLFENANDAIFIHD 406

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN------ESDGWDLFAAIIT 505
             G I   N          ++ L+    +  I+   +          +  G  +F  +  
Sbjct: 407 LKGNILEVNQLASQRLGYSKDELTNIKSMDLISPFYADNMKNRLNTIQKKGHGIFETVQI 466

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-------ALTEK 558
           + +     ++     LS  ++EY          +    ++T+  RAER        L + 
Sbjct: 467 TKNGSSIPVE-----LSSRIIEYE----GKTAILALARDITERKRAERKLNEYANELAKA 517

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           NE L+  D++K+ F+ +VS+EL++PLT+I G+++++    LG LN +Q + +  I  +S 
Sbjct: 518 NEELKSLDKMKDEFLSNVSHELKTPLTSIKGYSNIIYEETLGKLNDEQKKTMNTIVRNSE 577

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  LV+ ++ ++   AG ++ ++  + ++ ++++  +    ++++  + +       + 
Sbjct: 578 RLRRLVDSLIYMSMSQAGKIEYSFEPVQISKVIDDAIEDTNFEINKKGLILNKNVSENIP 637

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D+ +L  + + +L NA  F+S G  + ++A  ++      V + G  IPED+   +
Sbjct: 638 QINGDKAKLTDMLTNLLDNATKFTSSGGEITVEAFEEDEHIHIKVTDTGVGIPEDLIPYL 697

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F RF         +  G GLGL I +  ++ H G++ I S +   TT++ ++P  E
Sbjct: 698 FQRFYQIDSSIRRKYGGTGLGLYICKLIVDAHYGNIWIDSIEGKGTTVHVKLPETE 753



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 62/472 (13%), Positives = 155/472 (32%), Gaps = 58/472 (12%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE----------GIVFQKAIGES-- 240
             ++ + +++   +W  D+    ++ + +    T               + ++ IG    
Sbjct: 3   EFYEQILENISQGIWVVDKFDKFIYFSQNMADITGISKEDVIGKYLMSYMPERTIGNDVH 62

Query: 241 -RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-GEAGIAIDVSKE 298
            R+LF   +K  +                + + + +   I    +++ G A I  D++++
Sbjct: 63  FRELFLR-VKNTLQPEHFKSIPLRNKKGNITYQSGRLVPISDTDSNYNGMACIIEDITEQ 121

Query: 299 ITVNDQLTHTYEILHNL-----TVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATN 349
                     +E  + L     +  +  F    +++  ++F + + ++       F +  
Sbjct: 122 KLSKKTQRDEWEAENKLESIYKSSPVIAFLWRAEKDWPVEFVSDNIIQFGYTSEDFTSGR 181

Query: 350 PSNDEL-----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
               ++     L+ +R A    E   +  + +    + KS E    T     G+  +   
Sbjct: 182 LIFGDIVHPDDLQKVRDAVSQVEIGGYTYFTKEYRILTKSGEARWVTERSMLGRKYN--G 239

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G I    ++T +   E       +      ++   G+  F  +G +   N    
Sbjct: 240 VPAYYQGIII---DVTERKKAEEALRKSERKYRLIFENSPLGIFDFDENGVVTSGNENML 296

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            +     + L      +++           +  D+  A+   F  +    +G     + +
Sbjct: 297 KILDLTRDELIGFDMPKSL-----------EDEDMKKALYQVFQKKTGHYEGYYRSPTSN 345

Query: 525 ---VLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               L+    P+ + +      +    ++T+  +AE AL E  +  R   E  N      
Sbjct: 346 KTVPLKVDFSPIISEEGTIQGGVGIVEDITERKQAEEALKESEKKFRSLFENAND--AIF 403

Query: 577 SYELR-SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            ++L+ + L      +  L  SK    N K    +      +  + N +N I
Sbjct: 404 IHDLKGNILEVNQLASQRLGYSKDELTNIKSMDLISPFY--ADNMKNRLNTI 453



 Score = 46.1 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--EG 230
           GI  ++ E     + L      F+ LF++ +  ++  D  G+IL  N    +      + 
Sbjct: 369 GIVEDITERKQAEEALKESEKKFRSLFENANDAIFIHDLKGNILEVNQLASQRLGYSKDE 428

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN----NKSYKIVRVLNSF 286
           +   K++      + + +K R+ +         ETV   ++G+      S +I+      
Sbjct: 429 LTNIKSMDLISPFYADNMKNRLNTIQKKGHGIFETVQITKNGSSIPVELSSRIIEYEGKT 488

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILH 313
               +A D+++      +L      L 
Sbjct: 489 AILALARDITERKRAERKLNEYANELA 515


>gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1299

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 188/438 (42%), Gaps = 28/438 (6%)

Query: 368  QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
            + N+  ++E   +++K        W L  G  L    T  P         +++ +   E 
Sbjct: 581  EGNFFQYQEEFRALHKDG---SYRWLLTRGAALW-DKTGKPY-RIAGSHTDISERKKAEE 635

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +K Q   ++  ++G+A+  P G     N     L+   +     G     I    
Sbjct: 636  ----ALKSQLTALEAATDGIALVNPAGEYFYLNQTHLELFGYTQPNELVGRQWHII---- 687

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL--EYSIIPLPNAQTMLTFVNV 545
              Y  E       +     F   + S + T      S    E+S+  L +   +    ++
Sbjct: 688  --YPPEEIERIEKSVFPQLFKTGKWSGEATAVRKDGSTFAEEFSLTLLEDGGLIRVCRDI 745

Query: 546  TDSVRAERALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            T   +AE  + + ++ L  A+        +K+ F+  +S+ELR+PL  I+G ++ L+   
Sbjct: 746  TQRKQAEEQMQQNHQRLAMANAQLERATRLKDEFLASMSHELRTPLNAILGLSEALQEEV 805

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             GS+  +Q + +  I  S   LL L+ND+LDLA +++G M+L+   + L  L N     +
Sbjct: 806  YGSITDRQRKSLSTIQGSGQHLLELINDLLDLAKIESGKMELHICAVSLQKLCNSSLMFV 865

Query: 659  ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--N 716
              + H  NI++      KL     D +R+ Q+   +LSNA+ F+  G +VILKA  D   
Sbjct: 866  RNQAHHKNIKLTSQVTEKLWEIEVDERRIRQVLINLLSNAVKFTPTGGSVILKAEEDLLR 925

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
                FSV + G  I ++    +F  FV        +  G GLGL++V+  I +HGG V +
Sbjct: 926  NTICFSVMDTGIGIAKENMPKLFQSFVQIDSRLSRRYAGTGLGLALVQRTIEIHGGRVDV 985

Query: 775  SSSDEGVTTINCRIPSKE 792
             S     +     +P K+
Sbjct: 986  ESEVGQGSCFRVTLPIKQ 1003



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 109/301 (36%), Gaps = 35/301 (11%)

Query: 291 IAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           IA D+++     + L  T  +L          I + D+N+ + +HNR F ++W I    L
Sbjct: 62  IARDITERKQGENLLKRTKFLLKAQQEASIDGILVIDENQKIIWHNRRFGQMWNIPEEIL 121

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----- 401
            ++  + +LL+ + S    P++   +      +     SE  +D  +L +G+        
Sbjct: 122 NSSGDDQKLLKSVLSKLNKPKEFIHRL----KYLCEHPSEVSRDEIYLNDGRIFDRYSGS 177

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG---------------------ETI 440
           V+  ++     IW F ++T +  +E +   L +                          I
Sbjct: 178 VVSEASDYYTRIWYFRDITQRKQVEAQVTQLNQELSNHALELEVANTELAATKDFITNII 237

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           + +S+ + V     + K  N +F         +L   +      +  +  + ++D   + 
Sbjct: 238 NAVSDPIFVKDKHYKWKFFNDSFCEFIGYSREQLLGHSDSEFFVSEEAEVFRKTDQLVMK 297

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             ++   ++      G L  +S     +      N   +    ++T   + E  L + NE
Sbjct: 298 NGVVNENEEYFTDANGILHFISTKKTRF-FDSKNNPYIVGVIRDLTHRKQLEDRLAKLNE 356

Query: 561 A 561
            
Sbjct: 357 C 357



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 82/244 (33%), Gaps = 40/244 (16%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLA 347
           AG   D+S+     + L      L   T  IA+ +      + N++ +EL+       L 
Sbjct: 621 AGSHTDISERKKAEEALKSQLTALEAATDGIALVNPAGEYFYLNQTHLELFGYTQPNELV 680

Query: 348 TNPSN----DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
               +     E +E +   +  P+      W     +V K   T  + + L         
Sbjct: 681 GRQWHIIYPPEEIERI-EKSVFPQLFKTGKWSGEATAVRKDGSTFAEEFSL--------- 730

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
            T    GG I +  ++T +   E +     +                    R+ ++N   
Sbjct: 731 -TLLEDGGLIRVCRDITQRKQAEEQMQQNHQ--------------------RLAMANAQL 769

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT----LE 519
               + ++  L+  +H            +E+   +++ +I         ++QG+    LE
Sbjct: 770 ERATRLKDEFLASMSHELRTPLNAILGLSEALQEEVYGSITDRQRKSLSTIQGSGQHLLE 829

Query: 520 LLSD 523
           L++D
Sbjct: 830 LIND 833



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 62/201 (30%), Gaps = 10/201 (4%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTIWMFENLTVQVD 424
           NW  + EN+    + S           G+   V +       N +     +  ++T +  
Sbjct: 14  NWSRFWENLKQ--RGSFKQDSVHRTKYGREFPVEIGLNYLKFNYQEYNCVIARDITERKQ 71

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E        +     +   +G+ V   + +I   N  F  +W   E  L+     + + 
Sbjct: 72  GENLLKRTKFLLKAQQEASIDGILVIDENQKIIWHNRRFGQMWNIPEEILNSSGDDQKLL 131

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFV 543
            +     N+    +    +    +   +  +  + L    + + YS   +  A    T +
Sbjct: 132 KSVLSKLNKP--KEFIHRLKYLCEHPSEVSRDEIYLNDGRIFDRYSGSVVSEASDYYTRI 189

Query: 544 NVTDSVRAERALTEKNEALRK 564
                +   + +  +   L +
Sbjct: 190 WYFRDITQRKQVEAQVTQLNQ 210


>gi|119484750|ref|ZP_01619232.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457568|gb|EAW38692.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 727

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 137/567 (24%), Positives = 225/567 (39%), Gaps = 95/567 (16%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL+ +  AIA+FD N +L   N    + W +   FLA+ P  D +           E +N
Sbjct: 13  ILNQIDNAIALFDPNSHLILFNLKLAQTWGLSSEFLASQPDCDTVFR---------EIVN 63

Query: 371 WKTWKENIFSVYKS----SETHKDTWHLP--NGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
              W E      K+    SE+    + L   NG  L V  T  P GG ++ F  +T   +
Sbjct: 64  QGYWSEEQCQHLKACLLKSESQGSAFCLEQNNGVCLEVYTTITPSGGCLFTFREVTPLRN 123

Query: 425 LETKYNTLVKVQGETI---------DHLSEGVAVFGPDGRIKLSNPAF------------ 463
            +   N+ V+     +         D+L E +A F  +  +++ N AF            
Sbjct: 124 SQASLNSEVRRLKFLLGLNERLQDSDNLRE-IAQFALNYLVRVMNAAFGDVKVVTGEGKQ 182

Query: 464 -----------------------RSLWKTEENRLSPGT-HIRNIAAT-----CSRYYNES 494
                                    + +  E  +  G   +  +  T        Y N  
Sbjct: 183 RQAGAISNNISSQFVATYGEPVIAEMQQLLEKGIPYGQGLLWEVVETGEAVYVEDYANHP 242

Query: 495 DGWDLFAAI------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQTMLTFVNVT 546
              + F         I         + G L L S ++ +    P  +       T     
Sbjct: 243 QAMEGFRHPGIGQLGIFPIPATNGGIIGVLTLESRNLEQLQAYPQRDMLYAACRTLGTAI 302

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A+  L + NE L +A ++K+ F+  +S+ELR+PL +I+GF+DLLK    G LN +Q
Sbjct: 303 ERAQAQDRLRQINEDLERASQMKSEFLASMSHELRTPLNSILGFSDLLKRQISGELNHRQ 362

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +V+ I  S   LL L+NDILDL+ ++AG  +LN   + ++ L NE  + I  +  +  
Sbjct: 363 INHVKLIEKSGQHLLQLINDILDLSKIEAGKTELNIQAVEVHRLCNECLKMIQPRADKKR 422

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------- 717
           + + +  D +L     D +R+ QI   +LSNA+ F+ +   + L      G         
Sbjct: 423 LALSLELDYRLNQVALDERRVRQIIINLLSNAVKFTPEAGIIKLSGRLAYGSQMEGDYRP 482

Query: 718 ----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
                          V+++G  IPED    +F  F         +  G GLGL++ +   
Sbjct: 483 DCSPVNASTPYLCLEVQDSGIGIPEDRWHLLFRPFQQVDASLTRRHEGTGLGLALTKRLA 542

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            LHGG VS+ S     +     +P  E
Sbjct: 543 ELHGGTVSLQSDVNQGSRFRVWLPLTE 569


>gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472]
 gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 1480

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 129/651 (19%), Positives = 243/651 (37%), Gaps = 53/651 (8%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++L     K   L+   + ++ + D     V+  D AG  L+AN    +          K
Sbjct: 480  ADLRPLQEKSLALAESQARYQTVLDHAADAVFIADPAGRYLYANRQASQLLGYSQQELLK 539

Query: 236  --AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-AGIA 292
                  +         +   S  A      E +   + G     +I  +    G   G  
Sbjct: 540  LSIADITPPEDAGNAARAFQSLLAGSHVTAELLLKRKDGGQVPVEINAIQLPDGTFYGAC 599

Query: 293  IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
             D+++     +++     ++     +I I D+   +++ N +FV         +     +
Sbjct: 600  RDIAERKRTEEEIRKLSLVVEQSPESIMITDRQARIEYVNDAFVRKTGYSPDEVIGRDPS 659

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
                  L ++ K P+      W++         E H       +G+ L  +    P    
Sbjct: 660  ------LLASGKTPKSTYEDLWRQLQDGQSWKGEFHN---RCKDGRELVELARIAPIREK 710

Query: 409  RGGT---IWMFENLTVQVDL-------ETKYNTLVKVQGE--------------TIDHLS 444
             G     + + E++T +  L         +   LV+ +                 +D + 
Sbjct: 711  DGRISHYLALQEDITEKKRLGLELDNYRHRLEELVEARTAEVREAHARLQITQFAMDSVG 770

Query: 445  EGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
             G+    PD GR   +N     L    E  +     + +I          +    L  + 
Sbjct: 771  IGIQWIDPDSGRFVYANRHTAELLGYSEQEMLT-LTVSDIDPAFPLPAFHATMARLRQSR 829

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
             T F  + ++  G    +  ++          A+ +    +++     E+ L +  EA  
Sbjct: 830  YTQFQSQIETRGGVPIPVEITLYYMEGDADAPARVIAFLTDISRRKETEQTLVQAKEAAE 889

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            KA+  K +FV ++S+E+R+P+  I+G   LL     G L+++Q   ++ I  S+  LLNL
Sbjct: 890  KANLAKTAFVANMSHEIRTPMNAILGMVYLLSQ---GRLSAQQQHQLDTIDRSARHLLNL 946

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            +NDILDL+  D G ++L  S   L  L  +V   +A +     +++ + +D        D
Sbjct: 947  INDILDLSKADVGKLQLALSDFDLARLPADVMGLVADQAKAKGLQLSLQADAGPLPVRGD 1006

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
              RL Q    +LSNA+ F+ +G  + +  + D  D       F V++ G  IP ++   +
Sbjct: 1007 ATRLTQCLLNLLSNAVKFTERG-RIAISLSIDGEDEYGVLARFEVRDTGIGIPAEVQPRL 1065

Query: 739  FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            F  F        RR  G GLGL+I +    L GG V + S+    +     
Sbjct: 1066 FGAFEQADASTTRRYGGTGLGLAITKRLAELMGGAVGVESAPGQGSLFWFT 1116



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 138/405 (34%), Gaps = 54/405 (13%)

Query: 101 QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS--FDLVAETQNDC----AIK 154
             + +P+     L   +        +L+ A  ++   G+   F+++ E  +      ++K
Sbjct: 31  TLLGLPRVPEAGLRDHDLFPEAFADRLAAADRQVLSSGRPQEFEVLMEHLDPPRTYLSLK 90

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ-AG 213
              R         I ++ GI ++++E      ++S H  + + +        W  D  +G
Sbjct: 91  FPLRAPSGE----IYAIGGIATDISERKRLESQISEHDELLRDMSAIARIGGWWFDPISG 146

Query: 214 DILWAN--ISYKKNTETEGIVFQKAI----GESRKLFKEEIKKRMISSSALEKNFCETVS 267
              W           E   +  +  +    GESR+  +  ++  +      +        
Sbjct: 147 QGNWTAEVARIHDLPEAAPVNVEDGLSYYSGESRERIEAAVQAAIRDGKPYDLELE---L 203

Query: 268 TLEHGNNKSYK-IVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEIL----HNLTVA 318
               G  K  + + R     G      G   D+S        L  + E+L     +   A
Sbjct: 204 ISATGRRKWVRTLGRPQVRDGRVVKVRGAMQDISDRKQAELALRESEELLHLFVEHAPAA 263

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF---LRSANKLPEQLNWKTWK 375
           +A+FD+       +R ++  + ++   +          E     R+ ++    L+ +  +
Sbjct: 264 LAMFDRQMRYLAVSRRWLRDYGLEGRDILGQSHYAVFPEIPPAWRAVHRRG--LDGEVVR 321

Query: 376 ENIFSVYKSSETHK------DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           E      +++   +        W   +G            GG +   E++T +   E   
Sbjct: 322 EEEALFIRANGDQQWQKWEVRPWRRRDGTI----------GGILIYTEDITARKQAEKDK 371

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + L     E ++  ++ + +   + R+  +NPA+ +L     + L
Sbjct: 372 HWL----AEALNQAAQPILMVDAEDRVTYANPAYTALMGYSRDEL 412



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/393 (12%), Positives = 123/393 (31%), Gaps = 29/393 (7%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
           + + + D+    ++ +D  G  L AN+  +       +   +A      LF E    R+ 
Sbjct: 1   MLQSILDNSSAAIFVKDLDGRYLLANLGSQTLLGLPRV--PEAGLRDHDLFPEAFADRLA 58

Query: 254 SSSAL----EKNFCETVSTLEHGNNKSYKIVRVLNS------FGEAGIAIDVSKEITVND 303
           ++        +     V        ++Y  ++          +   GIA D+S+   +  
Sbjct: 59  AADRQVLSSGRPQEFEVLMEHLDPPRTYLSLKFPLRAPSGEIYAIGGIATDISERKRLES 118

Query: 304 QLTHTYEILHNLTVAIAI-----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           Q++   E+L +++ AIA      FD              + ++  A  A     D L  +
Sbjct: 119 QISEHDELLRDMS-AIARIGGWWFDPISGQGNWTAEVARIHDLPEA--APVNVEDGLSYY 175

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI----W 414
              + +  E       ++      +              + +  +     R G +     
Sbjct: 176 SGESRERIEAAVQAAIRDGKPYDLELELISATGRR----KWVRTLGRPQVRDGRVVKVRG 231

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             ++++ +   E       ++    ++H    +A+F    R    +  +   +  E   +
Sbjct: 232 AMQDISDRKQAELALRESEELLHLFVEHAPAALAMFDRQMRYLAVSRRWLRDYGLEGRDI 291

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              +H   +       +       L   ++   +       G  +     V  +      
Sbjct: 292 LGQSHY-AVFPEIPPAWRAVHRRGLDGEVVREEEALFIRANGDQQWQKWEVRPWRRRDGT 350

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               ++   ++T   +AE+      EAL +A +
Sbjct: 351 IGGILIYTEDITARKQAEKDKHWLAEALNQAAQ 383



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 95/292 (32%), Gaps = 39/292 (13%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHN---RSFVELWEIDLAFLATNPSNDE-LLEFLRSAN 363
              IL N + AI + D +      N   ++ + L  +  A L  +    E   + L +A+
Sbjct: 2   LQSILDNSSAAIFVKDLDGRYLLANLGSQTLLGLPRVPEAGLRDHDLFPEAFADRLAAAD 61

Query: 364 KLPEQLNWKTWKENIFSVYKSSETH---KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           +           E +        T+   K     P+G+   +       GG      +++
Sbjct: 62  RQVLSSGRPQEFEVLMEHLDPPRTYLSLKFPLRAPSGEIYAI-------GGIA---TDIS 111

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRSLWKTEENRLSPG 477
            +  LE++ +   ++  +       G   F P    G           L +     +  G
Sbjct: 112 ERKRLESQISEHDELLRDMSAIARIGGWWFDPISGQGNWTAEVARIHDLPEAAPVNVEDG 171

Query: 478 THI------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYS 529
                      I A       +   +DL   +I++    RK ++  G  ++    V++  
Sbjct: 172 LSYYSGESRERIEAAVQAAIRDGKPYDLELELISA-TGRRKWVRTLGRPQVRDGRVVKVR 230

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                         +++D  +AE AL E  E L    E   + +     ++R
Sbjct: 231 ----------GAMQDISDRKQAELALRESEELLHLFVEHAPAALAMFDRQMR 272


>gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 902

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 103/508 (20%), Positives = 206/508 (40%), Gaps = 39/508 (7%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           + ++       L ++   + + D+   +   N++  EL    L+  +      E+   + 
Sbjct: 148 LKEENERLLTTLESIGDGVIVTDKAGCVIMMNKAAQELTGY-LSCNSIGKPLSEVFVIIN 206

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRG-------GT 412
             N+ PE   +    E + S  K+    K+T  +  +G   +V  ++ P         G 
Sbjct: 207 GVNREPEPNPY----ERVLSERKTVGLRKNTMLVSKDGTLRYVSASTAPIKSSDREIMGV 262

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +F ++T     E K   L +     ++     + +    G I+  NP F  +     +
Sbjct: 263 VVVFRDITRIRKAEEKLQKLSQ----AVEQSPGIIVMADTRGNIEYVNPRFTEVTGYSFD 318

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII- 531
            +   +              +     +F+      +   KS    +        EY+   
Sbjct: 319 EVKGKSLFFMELEENGEEKCKDMIQAVFSGKEWRSEIRHKSKNNVV------FWEYAYYS 372

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTN 586
           P+ N++ ++T          ER L  +N     EA   A+  K+ F+ ++S+E+R+PL  
Sbjct: 373 PIINSEGVVTNYLKVSEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEIRTPLNG 432

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG T+L   ++   L  +Q + +  +++ + +LL ++NDILD + ++AG M L      
Sbjct: 433 IIGMTNLTLQTE---LTDEQRENLNIVNSCAELLLRVINDILDYSKIEAGKMTLENVKFD 489

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG 705
             +LL +  ++   + +E  +R+       +    V D  RL Q+ + ++SNA+ F+  G
Sbjct: 490 FFNLLEKTYKAHIVQANEKGLRLSYTVQKGIPRILVGDPGRLQQVLNNLISNAVKFTDIG 549

Query: 706 ST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
                V +   RD+     F+V + G  I  D    +F  F         +  G GLGL+
Sbjct: 550 EVRIDVDIIEKRDDSVKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLA 609

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCR 787
           I +  + + GG + + S     +T    
Sbjct: 610 ISKQLVEMMGGEIWVESQKGKGSTFYFT 637



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 95/302 (31%), Gaps = 40/302 (13%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG-IVFQKAIGESRKLFKE 246
           L           +S+   V   D+AG ++  N + ++ T         K + E   +   
Sbjct: 148 LKEENERLLTTLESIGDGVIVTDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIING 207

Query: 247 EIKK-------RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAI 293
             ++       R++S          T+   + G  +                 G   +  
Sbjct: 208 VNREPEPNPYERVLSERKTVGLRKNTMLVSKDGTLRYVSASTAPIKSSDREIMGVVVVFR 267

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+++     ++L    + +      I + D    +++ N  F E+            S D
Sbjct: 268 DITRIRKAEEKLQKLSQAVEQSPGIIVMADTRGNIEYVNPRFTEVTGY---------SFD 318

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNP---R 409
           E+        +L E    K  K+ I +V+   E   +  H   N          +P    
Sbjct: 319 EVKGKSLFFMELEENGEEKC-KDMIQAVFSGKEWRSEIRHKSKNNVVFWEYAYYSPIINS 377

Query: 410 GGTIWMF----ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            G +  +    E++T +  +               + + E + ++S  +     +G I +
Sbjct: 378 EGVVTNYLKVSEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEI-RTPLNGIIGM 436

Query: 459 SN 460
           +N
Sbjct: 437 TN 438


>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1099

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 131/665 (19%), Positives = 245/665 (36%), Gaps = 63/665 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+        E        +      +  + + +++   +   DQ G ++  N +     
Sbjct: 48  RLSDRSARLMEEELRAANQESRRQAKAHLQAILNTVGEGIVIADQTGTVVSVNPA---LL 104

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIVRVLNS 285
              G    + IG +  +       +   SS +E+ F     S        S+ I      
Sbjct: 105 SIFGYERDEVIGNNIDMLIPLAALKAAGSSGMERIFDLGRESMALRRGGTSFPIELAAGD 164

Query: 286 FGEAGIA------IDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSF 335
               G A       D+S+   +  ++  + E   +   + + +      +      +  F
Sbjct: 165 LTPTGSAQFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFSGQF 224

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            E      +    +  ++ + +      +L          +N+  +          +H  
Sbjct: 225 TEHTRALPSHYVGHTRDEMISDDTPMEARL----------QNLADMEARRPFRDFVYHTK 274

Query: 396 N----GQTLHVIVTS--NPRG---GTIWMFENLTVQVDLETKYN-------TLVKVQGET 439
           N    G+ L V      +P G   G      ++T +++   +          L +     
Sbjct: 275 NMDGPGRFLRVNGKPVFDPSGEFKGYRGTASDITEEIEAADRLKASQAEIERLAERNNSI 334

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++ + +G+     +GR    N A   L   E   L  G+ I  + A       + +  + 
Sbjct: 335 LESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELV-GSDILPLMAL------DMETAES 387

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVL--EYSIIPLPNAQ----TMLTFVNVTDSVRAER 553
              I+    D  +    + +    S L  EY   P+ +       +L F ++T     ER
Sbjct: 388 LYQILLRLADSIRDDTASFKRRDGSPLPVEYIASPVMDKGNQVGVVLGFRDITQRRLVER 447

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  EA    +  K+ F+  +S+E+R+P+  +IG T LL  +K   L  +Q  + E I
Sbjct: 448 QLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTK---LTEEQRHFAETI 504

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL ++NDILD + ++AG + L+Y+   L  L+  V   +A + H   I I  + 
Sbjct: 505 RDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLI 564

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGS 728
           D +L   V +D  RL Q+   +  NA+ F+ KG   + +      G      F V++ G 
Sbjct: 565 DPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLERPGAQPMVHFDVRDTGI 624

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +    +F+ F+       RR  G GLGL+I      L GG V + S     +    
Sbjct: 625 GIPPEAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGKGSRFWM 684

Query: 787 RIPSK 791
            +P +
Sbjct: 685 SVPME 689


>gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1524

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 132/687 (19%), Positives = 257/687 (37%), Gaps = 88/687 (12%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
             +  ++ E      +L     + +   D+    V   DQ+G I++ N +  ++       
Sbjct: 692  AVALDITERQQTEDRLR----LVEFALDNAQESVVIVDQSGQIVYVNKTACESLGYSSAK 747

Query: 233  FQKA-IGESRKLFKEEIK-KRMISSSALEKNFC-ETVSTLEHGNNKSYKIVRVLNSFGEA 289
                 I +  +      + ++       +K+   E++   + G     +I     +F   
Sbjct: 748  LSNLKIWQIDQTLNAPPQWEQFCQRLKHQKSLLLESIHHTQTGEAIPVEITLTELNFHGI 807

Query: 290  GI----AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
                  A D+ +       L      L       A+ +  R L     S  +L+++ L+ 
Sbjct: 808  PYFCEIARDIRERKQAEAALQKRDNYL------TALVEVQRQLLCA-TSQSDLYKLVLSI 860

Query: 346  LATNPSNDEL--LEFLRSANKLP--------------------------EQLNWKTWKEN 377
            L    +  ++   E      + P                          +   + +W E 
Sbjct: 861  LGQAANASQVYVFEHYYDEFQRPYLYYMSHWSAPDATSRLNRSVLQQLYDTPCFSSWVEK 920

Query: 378  IFSVYKSSETHKDTWH-------------------LPNGQTLHVIVTSNPRGGTIWMFEN 418
            +       E+  D                      +  G+   +I   N      W    
Sbjct: 921  LAQGEAICESLSDMTSEQRQILEPVGIFTVLLFPLIVKGEFFGLIGFDNDEDDRQWDEAE 980

Query: 419  LTVQVDL--------ETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            +++            E +     +K Q   I+  SEG+A+  P G     N A   L+  
Sbjct: 981  ISLLAAAVSAIALATERQLAQEQLKRQLTAIEAASEGIAITSPMGDYLYLNKAHLELFGY 1040

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VL 526
             E           +       Y+  +G  +   +I    ++  S    L +  D    + 
Sbjct: 1041 TEAN-------ELLNRNWKSLYHPEEGDRIDREVIAKLMEKGYSRGEALAIRKDGSTFLE 1093

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            E+S+    + + +    ++T+  RAE  L   N  L +A  +K+ F+ ++S+ELR+PL +
Sbjct: 1094 EFSLTLTNSGEFVCVCRDITERKRAEVELRRTNAQLERATRLKDEFMANMSHELRTPLYS 1153

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            I+G +++L+    G LN++Q + +  I  S   LL L+N+ILDL+ +++G M+L  S + 
Sbjct: 1154 ILGLSEVLQQEVYGVLNAEQLRSLSTIEQSGQHLLELINEILDLSKIESGKMELQLSAVN 1213

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            L  L       +  +  + NI+++ I+         D  R+ Q+   +LSNA+ F+ +G+
Sbjct: 1214 LTQLCQSSLNFVKPQADQKNIQLQFIATPVPVIINIDELRIRQVLINLLSNAVKFTPEGN 1273

Query: 707  TVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
             ++LK   +  N     SV + G  I  +    +F  FV        +  G GLGL++V 
Sbjct: 1274 HILLKIETEPQNNCVHLSVTDTGIGIAPEDQVRLFEPFVQIDSSLSRRYSGTGLGLALVR 1333

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
                +H G VS+ S     +T    +P
Sbjct: 1334 QITQMHAGTVSLDSEVGRGSTFIVTLP 1360



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 100/297 (33%), Gaps = 34/297 (11%)

Query: 169 LSLDGIYSEL-AETTLKCKKLSNHIS---VFKVLFDSLDFLVWHRDQA-GDILWANISYK 223
             L  +  EL A    +   L   I        + D+    ++  D       +AN    
Sbjct: 558 QRLQQLNQELEARVQQRTADLEAEIDERTRLLNILDASLNEIYIFDAETLKFQYANQGAL 617

Query: 224 KNTETEGIVFQK--AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK------ 275
           +N        Q+  AI    +L  E+ ++ +      +++     +  +  N        
Sbjct: 618 RNLGYTLEQLQQITAIKLKPQLTPEKFQQLIDPLLNHQQHKIIFRAAYQRKNGTLYPVEV 677

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            ++++          +A+D+++     D+L      L N   ++ I DQ+  + + N++ 
Sbjct: 678 HFQLIEHQQERLFLAVALDITERQQTEDRLRLVEFALDNAQESVVIVDQSGQIVYVNKTA 737

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            E      A L+        L+  +    L     W+ + + +   ++ S   +   H  
Sbjct: 738 CESLGYSSAKLSN-------LKIWQIDQTLNAPPQWEQFCQRL--KHQKSLLLESIHHTQ 788

Query: 396 NGQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYN-------TLVKVQGETI 440
            G+ + V +T      +       +  ++  +   E            LV+VQ + +
Sbjct: 789 TGEAIPVEITLTELNFHGIPYFCEIARDIRERKQAEAALQKRDNYLTALVEVQRQLL 845



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 56/458 (12%), Positives = 148/458 (32%), Gaps = 84/458 (18%)

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSFGEAGIAI----DVSKE 298
           + ++++ +  +++ E  + E    +  G      + +  + +  GE  + I    D+S  
Sbjct: 246 QHQLRQSIAKAASGESIYYEVNVKIVGGKVATTDFALRPLRDQTGEVILLIAESRDLSAH 305

Query: 299 ITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSF------------VELWEID 342
           + V   L         +L  +  A+   ++       N  F            +   + D
Sbjct: 306 VEVKRALQDNQILLSSVLDCIPQAVFWKNKEGNFLGCNYQFSVDGGLSSSKEIIGKTDFD 365

Query: 343 LAFLAT----NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           + +          + +++    +   + E +        + ++ +   +HK       G+
Sbjct: 366 MPWKEEAKLYRADDHQVMASGEAKLNIEEPI------TKVGNISRLLRSHKMPLRDAEGE 419

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VAVFGPDGRIK 457
            +          G +  +E++T +   E             +++   G V +F  D R  
Sbjct: 420 II----------GVVGTYEDITERKKAELALRCSEARYQMLVENFPNGAVMMFDHDLRYI 469

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIA----ATCSRYYNESDGWDLFAAIITSFDDERKS 513
           L      +     +  +   T    +           Y+ +   + F A +         
Sbjct: 470 LIGGLGLAEVGLSKQEMEGKTIWEALPKETCELIEPLYHRTLAGEEFVAEL--------- 520

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIK 569
                    D +      P+ + +T+ T      ++T   +AE+ L + N+ L    + +
Sbjct: 521 ------PFGDHIYLVYFFPIIDQETIQTGVVLTQDITQQKQAEQRLQQLNQELEARVQQR 574

Query: 570 NSFVQHVSYEL--RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL---V 624
                 +  E+  R+ L NI         + L  +    ++ +++  A+   L NL   +
Sbjct: 575 T---ADLEAEIDERTRLLNI-------LDASLNEIYIFDAETLKFQYANQGALRNLGYTL 624

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  +  +    +K   +      L++ +      K+
Sbjct: 625 EQLQQITAI---KLKPQLTPEKFQQLIDPLLNHQQHKI 659



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 58/451 (12%), Positives = 133/451 (29%), Gaps = 62/451 (13%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWANISYKKNT 226
           I+ + G Y ++ E       L    + +++L ++     V   D     +          
Sbjct: 420 IIGVVGTYEDITERKKAELALRCSEARYQMLVENFPNGAVMMFDHDLRYILIGGLGLAEV 479

Query: 227 -----ETEGIVFQKAIGESRKLFKEEIKKRMISSSA--LEKNFCETVSTLEHGNNKSYKI 279
                E EG    +A+ +      E +  R ++      E  F + +  +       + I
Sbjct: 480 GLSKQEMEGKTIWEALPKETCELIEPLYHRTLAGEEFVAELPFGDHIYLV-----YFFPI 534

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLT-------------------------HTYEILHN 314
           +          +  D++++     +L                              IL  
Sbjct: 535 IDQETIQTGVVLTQDITQQKQAEQRLQQLNQELEARVQQRTADLEAEIDERTRLLNILDA 594

Query: 315 LTVAIAIFDQNR-YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
               I IFD      Q+ N+  +      L  L       ++          PE   ++ 
Sbjct: 595 SLNEIYIFDAETLKFQYANQGALRNLGYTLEQL------QQITAIKLKPQLTPE--KFQQ 646

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-----SNPRGGTIWMFENLTVQVDLETK 428
             + + +  +     +  +   NG    V V             + +  ++T +   E +
Sbjct: 647 LIDPLLNHQQHKIIFRAAYQRKNGTLYPVEVHFQLIEHQQERLFLAVALDITERQQTEDR 706

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT--HIRNIAAT 486
              LV+     +D+  E V +    G+I   N            +LS      I      
Sbjct: 707 LR-LVEF---ALDNAQESVVIVDQSGQIVYVNKTACESLGYSSAKLSNLKIWQIDQTLNA 762

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             ++           +++       ++ +     ++ + L +  IP           ++ 
Sbjct: 763 PPQWEQFCQRLKHQKSLLLESIHHTQTGEAIPVEITLTELNFHGIPY----FCEIARDIR 818

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +  +AE AL +++  L    E++   +   S
Sbjct: 819 ERKQAEAALQKRDNYLTALVEVQRQLLCATS 849



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 26/303 (8%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +L+N     AI  +   L   N++ ++   +        P  +            
Sbjct: 188 QKIKALLNNTFQCTAILSREGILLDVNQTALDFGGLKREETINRPFWETYW-----WTIS 242

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPR--GGTIWMF---E 417
           PE       +++I         + +      G    T    +       G  I +     
Sbjct: 243 PET--QHQLRQSIAKAASGESIYYEVNVKIVGGKVATTDFALRPLRDQTGEVILLIAESR 300

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +L+  V+++        +    +D + + V     +G     N  F        ++   G
Sbjct: 301 DLSAHVEVKRALQDNQILLSSVLDCIPQAVFWKNKEGNFLGCNYQFSVDGGLSSSKEIIG 360

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNA 536
               ++          +D   + A+     + +E  +  G +  L    L    +PL +A
Sbjct: 361 KTDFDMPWKEEAKLYRADDHQVMASGEAKLNIEEPITKVGNISRL----LRSHKMPLRDA 416

Query: 537 Q-----TMLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +      + T+ ++T+  +AE AL   +       +   N  V    ++LR  L   +G 
Sbjct: 417 EGEIIGVVGTYEDITERKKAELALRCSEARYQMLVENFPNGAVMMFDHDLRYILIGGLGL 476

Query: 591 TDL 593
            ++
Sbjct: 477 AEV 479


>gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
           ATCC 27405]
 gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
           ATCC 27405]
 gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           1313]
          Length = 902

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 103/508 (20%), Positives = 206/508 (40%), Gaps = 39/508 (7%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           + ++       L ++   + + D+   +   N++  EL    L+  +      E+   + 
Sbjct: 148 LKEENERLLTTLESIGDGVIVTDKAGCVIMMNKAAQELTGY-LSCNSIGKPLSEVFVIIN 206

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRG-------GT 412
             N+ PE   +    E + S  K+    K+T  +  +G   +V  ++ P         G 
Sbjct: 207 GVNREPEPDPY----ERVLSERKTVGLRKNTMLVSKDGTLRYVSASTAPIKSSDREIMGV 262

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +F ++T     E K   L +     ++     + +    G I+  NP F  +     +
Sbjct: 263 VVVFRDITRIRKAEEKLQKLSQ----AVEQSPGIIVMADTRGNIEYVNPRFTEVTGYSFD 318

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII- 531
            +   +              +     +F+      +   KS    +        EY+   
Sbjct: 319 EVKGKSLFFMELEENGEEKCKDMIQAVFSGKEWRSEIRHKSKNNVV------FWEYAYYS 372

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTN 586
           P+ N++ ++T          ER L  +N     EA   A+  K+ F+ ++S+E+R+PL  
Sbjct: 373 PIINSEGVVTNYLKVSEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEIRTPLNG 432

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG T+L   ++   L  +Q + +  +++ + +LL ++NDILD + ++AG M L      
Sbjct: 433 IIGMTNLTLQTE---LTDEQRENLNIVNSCAELLLRVINDILDYSKIEAGKMTLENVKFD 489

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG 705
             +LL +  ++   + +E  +R+       +    V D  RL Q+ + ++SNA+ F+  G
Sbjct: 490 FFNLLEKTYKAHIVQANEKGLRLSYTVQKGIPRILVGDPGRLQQVLNNLISNAVKFTDIG 549

Query: 706 ST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
                V +   RD+     F+V + G  I  D    +F  F         +  G GLGL+
Sbjct: 550 EVRIDVDIIEKRDDSVKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLA 609

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCR 787
           I +  + + GG + + S     +T    
Sbjct: 610 ISKQLVEMMGGEIWVESQKGKGSTFYFT 637



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 42/303 (13%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE---------TEGIVFQKAIG 238
           L           +S+   V   D+AG ++  N + ++ T              VF    G
Sbjct: 148 LKEENERLLTTLESIGDGVIVTDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIING 207

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIA 292
            +R+   +   +R++S          T+   + G  +                 G   + 
Sbjct: 208 VNREPEPDPY-ERVLSERKTVGLRKNTMLVSKDGTLRYVSASTAPIKSSDREIMGVVVVF 266

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            D+++     ++L    + +      I + D    +++ N  F E+            S 
Sbjct: 267 RDITRIRKAEEKLQKLSQAVEQSPGIIVMADTRGNIEYVNPRFTEVTGY---------SF 317

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNP--- 408
           DE+        +L E    K  K+ I +V+   E   +  H   N          +P   
Sbjct: 318 DEVKGKSLFFMELEENGEEKC-KDMIQAVFSGKEWRSEIRHKSKNNVVFWEYAYYSPIIN 376

Query: 409 RGGTIWMF----ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIK 457
             G +  +    E++T +  +               + + E + ++S  +     +G I 
Sbjct: 377 SEGVVTNYLKVSEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEI-RTPLNGIIG 435

Query: 458 LSN 460
           ++N
Sbjct: 436 MTN 438


>gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 840

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 118/641 (18%), Positives = 244/641 (38%), Gaps = 49/641 (7%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK- 242
           + +     +  ++ +  ++   +   D+       N +Y           ++ +G + + 
Sbjct: 15  QDEPSQETLRKYQAIVSTVKEPMSFVDRNYVYQAVNQAYLDTFAG---SRKEIVGHTVES 71

Query: 243 -----LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV------RVLNSFGEAGI 291
                +F   +K R+      ++   E+      G  +   +             G    
Sbjct: 72  LLGAHVFDNIVKPRLDRCLEGKEEHYESWFDTPAGIQECLSVFFHPCLDENGQIQGVIVH 131

Query: 292 AIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           A +++++  + + L  + +    I      A  I +++  +   N  F  L       + 
Sbjct: 132 ARNITEQKRLEEALRRSQQYYRAIFETTGTAQVIIEEDTTISLANSRFEGLSGYCRQDIE 191

Query: 348 TNPSNDEL-----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              S  E      LE +R  +    + ++   ++  F    +       +   +  T+  
Sbjct: 192 GRKSWTEFVHPQDLEQMRHFHFSRRKDDYTAPRQYEFRFIDAHGHEHHIYLCID--TIPG 249

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              S      I    ++T +   E              D   + + + GP+G I   NP 
Sbjct: 250 TTQS------IASLMDITERKQAENALQESRAQLQAITDSAQDAIVLMGPEGEIAYWNPM 303

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
             S++      +  G  + NI A    +      +  F       D   K+++ +     
Sbjct: 304 AESIFGYTAEEIV-GKDLHNILAPARYHEQHLKAFQHFQQTGRG-DAIGKTIELSALDRD 361

Query: 523 DS----VLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                  L  S + L N    +    ++T    AE  + +  +    A+  K+ F+ ++S
Sbjct: 362 GREFPISLSLSAVSLQNRWHAVGIVRDITRQKDAEEKIVKARDEAEAANRAKSEFLANMS 421

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+P+  I+G   LL+ +   SL+ +Q+QYV+    S+  L  L++DILDL+ ++AG 
Sbjct: 422 HEIRTPINGIMGMMQLLEAT---SLDVEQAQYVQMGLTSARRLTRLLSDILDLSRIEAGQ 478

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILS 696
           M++      +  L   V +       E NI ++   D +L    + D  RL QI   ++ 
Sbjct: 479 MEIRQEEFDVRKLCFSVTELFMVTCREKNIALEYSLDPQLPEILLGDETRLQQILFNLVG 538

Query: 697 NAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQ 750
           NA+ F+ +G   +    +K    +   + +V + G  +       +F  FV    A+  +
Sbjct: 539 NALKFTEQGRVQVNWHLMKRRERDIQVLLTVSDTGIGMTPHRAGDLFKPFVQAENAYTRK 598

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +G GLGLSIV+  + L  G V++ S  +  +T N  +P K
Sbjct: 599 YQGAGLGLSIVKRLVELMHGEVTVESMPDAGSTFNILLPLK 639



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 98/314 (31%), Gaps = 34/314 (10%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +++    + L     I+  +   ++  D+N   Q  N+++++ +      +  +     L
Sbjct: 14  TQDEPSQETLRKYQAIVSTVKEPMSFVDRNYVYQAVNQAYLDTFAGSRKEIVGHTVESLL 73

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNG--QTLHVIVTSNPRG-- 410
              +      P           +    +  E H ++W   P G  + L V          
Sbjct: 74  GAHVFDNIVKP----------RLDRCLEGKEEHYESWFDTPAGIQECLSVFFHPCLDENG 123

Query: 411 ---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
              G I    N+T Q  LE       +      +       +   D  I L+N  F  L 
Sbjct: 124 QIQGVIVHARNITEQKRLEEALRRSQQYYRAIFETTGTAQVIIEEDTTISLANSRFEGLS 183

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                 +               +  + +    F       DD     Q     +     E
Sbjct: 184 GYCRQDIEGRKSWTEFV-----HPQDLEQMRHFH-FSRRKDDYTAPRQYEFRFIDAHGHE 237

Query: 528 YSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE--- 579
           + I    +      Q++ + +++T+  +AE AL E    L+   +     +  +  E   
Sbjct: 238 HHIYLCIDTIPGTTQSIASLMDITERKQAENALQESRAQLQAITDSAQDAIVLMGPEGEI 297

Query: 580 -LRSPLT-NIIGFT 591
              +P+  +I G+T
Sbjct: 298 AYWNPMAESIFGYT 311


>gi|209523399|ref|ZP_03271954.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209496141|gb|EDZ96441.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 728

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 133/562 (23%), Positives = 237/562 (42%), Gaps = 85/562 (15%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL+ +  AIA+FD +  L   N     +W I +  LA  PS D++   + ++ KL  + +
Sbjct: 13  ILNQIDQAIALFDSSDRLILFNPQLAAIWGISVDQLAAQPSLDDICAEI-TSKKLWLKPD 71

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           W+  ++ +    +   +     H  N   L V   +   GG +  F ++T   + +   N
Sbjct: 72  WEHLRQTLRDCVRGEISFCIQQH--NQIYLEVHSQTTASGGRLLTFRDITDHRNTQLSLN 129

Query: 431 TLVKVQGETI---------DHLSEGVAVFGPDGRIKLSNPAF---RSLWKTEENRLSPGT 478
           T V+     +         D+L + +A F  +  +  +N AF   + +    ENR++ G 
Sbjct: 130 TEVRRLRFLLGLNERLQDSDNL-DNIAQFALNYLVNTTNAAFGDVKVILGEGENRIT-GM 187

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-----QGTLELLSD---------- 523
               I+      Y E    ++ AA+          L      G    + D          
Sbjct: 188 LGNQISGHFVATYGEPAVAEMKAALSQGIPYGEGLLWDVVRTGEPRFVRDYANHPKAFSP 247

Query: 524 ----SVLEYSIIPLPNAQT----------------------------MLTFVNVTDSVRA 551
                + +  I P+P                                  T     +   A
Sbjct: 248 FRHPGIGQLGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAEA 307

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  L + NE L +A ++K+ F+  +S+ELR+PL +++GF DLLK    G+LNS+Q   V+
Sbjct: 308 QERLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQVQ 367

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +I  S   LL+L+NDILDL+ +++G  +LN  ++ +++L +E  + +  +  +  + + +
Sbjct: 368 FIEKSGWHLLHLINDILDLSKIESGKTELNLESVDIHELCSECLKMVQPRADKKCLALSL 427

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGD-------- 718
            SD ++     DR+R+ QI   +LSNA+ F+ +G  V L       ++  GD        
Sbjct: 428 ESDYRITQVWLDRRRVRQIMINLLSNAIKFTPEGGRVRLSGHLAYGSQIEGDYRPDCSPI 487

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
                     V+++G  IP+D    +F  F         +  G GLGL + +    LHGG
Sbjct: 488 NDSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGG 547

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            VS+ S     +     +P  E
Sbjct: 548 TVSLQSQVNQGSRFRVWLPLTE 569



 Score = 44.9 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 5/136 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA--T 486
              L   Q   ++ + + +A+F    R+ L NP   ++W    ++L+    + +I A  T
Sbjct: 3   IQQLKDQQILILNQIDQAIALFDSSDRLILFNPQLAAIWGISVDQLAAQPSLDDICAEIT 62

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             + + + D   L   +    D  R  +   ++  +   LE       +   +LTF ++T
Sbjct: 63  SKKLWLKPDWEHLRQTLR---DCVRGEISFCIQQHNQIYLEVHSQTTASGGRLLTFRDIT 119

Query: 547 DSVRAERALTEKNEAL 562
           D    + +L  +   L
Sbjct: 120 DHRNTQLSLNTEVRRL 135


>gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1391

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 132/664 (19%), Positives = 247/664 (37%), Gaps = 72/664 (10%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
            ++ +   +  +  +       + +SL   V   D+    ++AN   +         +Q  
Sbjct: 423  DVTDMKGRETEAQDARKHLASVLESLPAGVIIYDRDDKFVFANRKLQDTLPALKPFWQPG 482

Query: 237  IGESRKL-FKEEIKKRMISSSALEKNFCETVST------------------LEHGNNKSY 277
                  L F + I     S  A      E                        + + + Y
Sbjct: 483  CSFREALEFGQSIGYFRSSGDAGIDRLYEVEPEHWLDSMLARYRLPNSSYERLNADGRWY 542

Query: 278  KIVRVLNSFGE-AGIAIDV----SKEITVNDQLTHT---YEILHNLTVAIAIFDQNRYLQ 329
            ++  +    G   G+ +D+    S+E  + D +        ++  L VA  I  Q+  ++
Sbjct: 543  QVYDMRTDDGTFIGVRVDITDIKSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLSIE 602

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            F N+++  L  I           D +    R      +   +      +    K  E  +
Sbjct: 603  FVNKAWCALTGI--------AKEDVIGRTDRELFGTQDAEGYSHDDTQVVVTGKGIEVEE 654

Query: 390  DTWHLPNGQTLHVIVTSNPRGGT------IWMFENLTVQVDLETKYNTLVK---VQGETI 440
               H  +G    ++   +    T      +    ++T     E      ++   V    I
Sbjct: 655  PVTHR-DGTVRQLMTRKSRLVATDGSVHLVGSSTDITDVKAREKALEESMRENEVFRSLI 713

Query: 441  DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            D++   +     D R    N  +  L           T I              DG    
Sbjct: 714  DNVPVSIYAKRSDLRQFYVNKGWCDLTGLSREDAIGKTDIEIFGE---------DGEAFV 764

Query: 501  AAIITSFD-DERKSLQGTLELLSDSVLE------YSIIPLPNAQTMLTFVNVTDSVRAER 553
            A  +      E + ++ T+ L   SV          I    +   + +  ++T+    E 
Sbjct: 765  AGDLAVLRTGETQEVEETVRLADGSVRHQFARKGAMIASDGSLYLIGSTTDITELKMREA 824

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L+E  +    AD  K+ F+ ++S+E+R+P+  ++G  +LL  S   +L+ KQ  + + I
Sbjct: 825  ELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS---NLDPKQKTFTDII 881

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S   LL ++NDILD + +DAG M L+ +   L + + +V   ++T+  E ++ + V  
Sbjct: 882  VKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRV 941

Query: 674  DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSS 729
            + +L S FV D  R+ QI + +L NA+ F+ +G     V  +          SV + G  
Sbjct: 942  EPRLESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTRLTISVTDTGIG 1001

Query: 730  IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT--IN 785
            IPE+  K VF +F        RR  G GLGL+I    + L GG + + S++   +T    
Sbjct: 1002 IPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESAEGKGSTFWFT 1061

Query: 786  CRIP 789
              +P
Sbjct: 1062 VTLP 1065



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 118/374 (31%), Gaps = 40/374 (10%)

Query: 145 AETQNDCAIKIEGRVSGSCAFLR-ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
             T        EG+ +G     R + +L G +  + +  L       H++  +   D++ 
Sbjct: 124 VLTSGFPRFDNEGKFAGYRGIGRNVTTLAGAFETVEQNPLSGSDPDRHLADLERTMDAMH 183

Query: 204 FLVWHRDQAGDILWANISYKKNT---------------------------ETEGIVFQKA 236
             V   D   D L  N +Y+  +                           + +   +Q+ 
Sbjct: 184 MGVVLLDAKLDTLIVNKAYRDLSSIPDGAVTVGAPFSRLMELNRRNGIYGDIDEQQWQRY 243

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVLNSFGEAGIAID 294
           +    +  +           A  +    +V+ L  G      Y++  +     E      
Sbjct: 244 LASRIEEIRAGSVAPREFVHASGRTMMFSVTALSGGKRLLTYYEVTELKRRDAEIE---- 299

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S    + +   +   ++  + + + + D +   +  N +F + W ID        +  E
Sbjct: 300 -SANAKIAETFVNLRTMVDEMPIGVLVLDADMRAEVINSAFYDFWRIDPGRAGIGSAFRE 358

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
           L+E  R+    P   +   W+ +        ++           +G+TL   +   P G 
Sbjct: 359 LMEASRA--IDPYGADELAWQRHTTEREAEIRAGVAGSKQLPHNDGRTLVASLAPLPGGK 416

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +  + ++T     ET+     K     ++ L  GV ++  D +   +N   +      +
Sbjct: 417 RLISYVDVTDMKGRETEAQDARKHLASVLESLPAGVIIYDRDDKFVFANRKLQDTLPALK 476

Query: 472 NRLSPGTHIRNIAA 485
               PG   R    
Sbjct: 477 PFWQPGCSFREALE 490



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/463 (15%), Positives = 145/463 (31%), Gaps = 43/463 (9%)

Query: 151 CAIKIEGRV--------SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
             +   GR         SG    L    +  +    AE      K++      + + D +
Sbjct: 260 EFVHASGRTMMFSVTALSGGKRLLTYYEVTELKRRDAEIESANAKIAETFVNLRTMVDEM 319

Query: 203 DFLVWHRDQAGDILWANISYKK------NTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
              V   D        N ++             G  F++ +  SR +      +      
Sbjct: 320 PIGVLVLDADMRAEVINSAFYDFWRIDPGRAGIGSAFRELMEASRAIDPYGADELAWQRH 379

Query: 257 ALEKNFCETVST-----LEHGNNKSYKIVRVLNSFGEAGIA-IDVS----KEITVNDQLT 306
             E+             L H + ++          G+  I+ +DV+    +E    D   
Sbjct: 380 TTEREAEIRAGVAGSKQLPHNDGRTLVASLAPLPGGKRLISYVDVTDMKGRETEAQDARK 439

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF------LR 360
           H   +L +L   + I+D++    F NR   +       F     S  E LEF       R
Sbjct: 440 HLASVLESLPAGVIIYDRDDKFVFANRKLQDTLPALKPFWQPGCSFREALEFGQSIGYFR 499

Query: 361 SANKLP----EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           S+         ++  + W +++ + Y+   +  +  +  +G+   V       G  I + 
Sbjct: 500 SSGDAGIDRLYEVEPEHWLDSMLARYRLPNSSYERLN-ADGRWYQVYDMRTDDGTFIGVR 558

Query: 417 ENLTVQVDLETKYN---TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            ++T     E         + +    +D L     +   D  I+  N A+ +L    +  
Sbjct: 559 VDITDIKSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLSIEFVNKAWCALTGIAKED 618

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +   T         +  Y+  D   +        ++      GT+  L            
Sbjct: 619 VIGRTDRELFGTQDAEGYSHDDTQVVVTGKGIEVEEPVTHRDGTVRQLMTRKSRLVATD- 677

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +   + +  ++TD    E+AL    E   + +E+  S + +V
Sbjct: 678 GSVHLVGSSTDITDVKAREKAL----EESMRENEVFRSLIDNV 716



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 137/416 (32%), Gaps = 47/416 (11%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE------SRK 242
            +     + L ++    +W  D      W + +Y+  T   GI     +G       ++ 
Sbjct: 31  RDSPDALRQLLEAGSDWIWETDAELRFSWLSPTYQAAT---GIDPADVLGRFRFDFLNQD 87

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS--------FGEAGIAID 294
           L         +      + F + V  L+ G      ++              G  GI  +
Sbjct: 88  LKGSRSAAAHLEDLQARRPFRDFVYELKAGGADCRWVLTSGFPRFDNEGKFAGYRGIGRN 147

Query: 295 VSKEITV--------------NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
           V+                   +  L      +  + + + + D        N+++ +L  
Sbjct: 148 VTTLAGAFETVEQNPLSGSDPDRHLADLERTMDAMHMGVVLLDAKLDTLIVNKAYRDLSS 207

Query: 341 IDLAFLATNPSNDELLEFLRSANKLP--EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           I    +        L+E  R        ++  W+ +  +     ++       +   +G+
Sbjct: 208 IPDGAVTVGAPFSRLMELNRRNGIYGDIDEQQWQRYLASRIEEIRAGSVAPREFVHASGR 267

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-------DHLSEGVAVFG 451
           T+   VT+   G  +  +  +T     + +  +      ET        D +  GV V  
Sbjct: 268 TMMFSVTALSGGKRLLTYYEVTELKRRDAEIESANAKIAETFVNLRTMVDEMPIGVLVLD 327

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE- 510
            D R ++ N AF   W+ +  R   G+  R +         +  G D  A    + + E 
Sbjct: 328 ADMRAEVINSAFYDFWRIDPGRAGIGSAFRELMEASRAI--DPYGADELAWQRHTTEREA 385

Query: 511 --RKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             R  + G+ +L       L  S+ PLP  + ++++V+VTD    E    +  + L
Sbjct: 386 EIRAGVAGSKQLPHNDGRTLVASLAPLPGGKRLISYVDVTDMKGRETEAQDARKHL 441



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 65/182 (35%), Gaps = 16/182 (8%)

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN---HISVFKVL 198
           +     ++    ++  R S   A    + L G  +++ +   + K L        VF+ L
Sbjct: 653 EEPVTHRDGTVRQLMTRKSRLVATDGSVHLVGSSTDITDVKAREKALEESMRENEVFRSL 712

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEE-----IKKRM 252
            D++   ++ +       + N  +   T   G+  + AIG++  ++F E+          
Sbjct: 713 IDNVPVSIYAKRSDLRQFYVNKGWCDLT---GLSREDAIGKTDIEIFGEDGEAFVAGDLA 769

Query: 253 ISSSALEKNFCETVSTLEHGNNKSY----KIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
           +  +   +   ETV   +      +     ++    S    G   D+++      +L+  
Sbjct: 770 VLRTGETQEVEETVRLADGSVRHQFARKGAMIASDGSLYLIGSTTDITELKMREAELSEA 829

Query: 309 YE 310
            +
Sbjct: 830 RQ 831


>gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 632

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 134/619 (21%), Positives = 239/619 (38%), Gaps = 51/619 (8%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNF 262
             D    I++ N + +      G  F++  G    +F      EEI+K +  + A  K +
Sbjct: 29  VTDTNSAIIYMNKAAEHLF---GWSFEELKGRKTDVFNAEQMSEEIQKEIYDTVASGKIY 85

Query: 263 CETVSTLEHGNNKSYKIVRVL-------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNL 315
              +   +      Y  +R+        N     G   D++       +L    E L  L
Sbjct: 86  NGELLNKKKDGTYFYVQIRISPIYDKKGNIIAYMGSQRDITNLKQTEKRLQQEREFLEKL 145

Query: 316 ----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
                VAI   D N  +   N S  +++      +       E L  +       E ++ 
Sbjct: 146 IQTSPVAIHGTDTNSNVIIWNESSEKIFGWSREEV-----IGEFLPTVPE-----ENIDE 195

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVD 424
                N     ++   ++      +G  L+  ++  P         G +   E++T +  
Sbjct: 196 HLSLRNRVLAGETITGYEVCRLRKDGSYLYGSLSVAPMYDQKGNIFGIMANMEDITEKKQ 255

Query: 425 LETKYNTLVKVQGETIDHLSEGV--AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            E K             +L   V  A     G    +           E    P   I N
Sbjct: 256 YEYKLKEAFNQLESIHFNLPISVWSATVDETGDFVDT----YISEGVNELLALPPNTIGN 311

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----- 537
                  Y       ++         +  K +    E+++ S +    +    AQ     
Sbjct: 312 DFKAFLNYVKPHYLPEIKDKFEEGIKNPGKVVSFEYEVINGSGVTRWFLSSGRAQEENGT 371

Query: 538 --TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                + +++T +  AE++L         A+  K  F+ +VS+ELR+PL  IIGF+ +L 
Sbjct: 372 VKVYGSTIDITKNKNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILS 431

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T+K G+LN K+ +YV  I  S   LL L+N ILD++ + AG   L    +   ++  ++K
Sbjct: 432 TNKSGNLNDKELKYVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIK 491

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             I   + + N+  + I D    +  AD+ ++LQI   +L NA+ F+ +  ++ + A   
Sbjct: 492 PFIDPLIAKKNLSFECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAINARCI 551

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
             +F  SVK+ G  IPE   K +F+ F         +  G GLGL++V+ +I +HGG + 
Sbjct: 552 GDNFQVSVKDTGIGIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIW 611

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     +T    IP  +
Sbjct: 612 VESEVGKGSTFTFVIPQNQ 630



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 87/273 (31%), Gaps = 24/273 (8%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           D      EI+     +I + D N  + + N++   L+      L    ++      + +A
Sbjct: 11  DNFNIWSEIVKQSVDSIVVTDTNSAIIYMNKAAEHLFGWSFEELKGRKTD------VFNA 64

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMF--- 416
            ++ E++  + +         + E         +G   +V +  +P   + G I  +   
Sbjct: 65  EQMSEEIQKEIYDTVASGKIYNGELLNKK---KDGTYFYVQIRISPIYDKKGNIIAYMGS 121

Query: 417 -ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T     E +     +   + I      +     +  + + N +   ++      + 
Sbjct: 122 QRDITNLKQTEKRLQQEREFLEKLIQTSPVAIHGTDTNSNVIIWNESSEKIFGWSREEV- 180

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G  +  +       +       L    IT ++  R    G+    S      S+ P+ +
Sbjct: 181 IGEFLPTVPEENIDEHLSLRNRVLAGETITGYEVCRLRKDGSYLYGS-----LSVAPMYD 235

Query: 536 --AQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
                     N+ D    ++   +  EA  + +
Sbjct: 236 QKGNIFGIMANMEDITEKKQYEYKLKEAFNQLE 268


>gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 1001

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 108/541 (19%), Positives = 211/541 (39%), Gaps = 28/541 (5%)

Query: 271 HGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIA 320
            G +  +++       +         IA D+S+   +  +L    +   +L      A+ 
Sbjct: 461 DGRHIWFEVNCKYISTQDNQRNEIISIARDISERKMMEFKLKENEQRYRSLFEYNPSAVY 520

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
             + +      N +  EL    L  L            +   +      ++   KE    
Sbjct: 521 SMNLDGDYLTANHNLQELTGYTLDELVG----MYFGPIVAEKDMARTLYHFNLAKEGRPQ 576

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            Y  +  HKD   +        I   +   G   +  ++T ++    +   L +     +
Sbjct: 577 SYDLTIIHKDGHPIEINTINIPIFVDDEVVGVYGITRDITERIRTMEEIKKLSRELSLLL 636

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWD 498
           + +SEG+      G++   NPA  ++    E   + G     I         +   +   
Sbjct: 637 NTVSEGIIGLDIHGQVAFINPAGAAMLD-YEPLTTIGRPCDQIVKEIRHDGTFYRGEDSP 695

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L  A+       R  +       +  + +Y + P+ +       V V   +  E+ +   
Sbjct: 696 LVQAVRQGTPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERKGAVMVFRDITDEKEIIRA 755

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   +AD+ K  F+  +S+ELR+P+  IIG  +LLKT++   L+  Q  Y + +  SS 
Sbjct: 756 KENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLKTTE---LDEDQRNYTDILMESSG 812

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+++N+ILD + ++ G M LN   I +  LL  +    + K  E  + +    +  + 
Sbjct: 813 SLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLFSAKAKEKGLLLSCSINTTVP 872

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSVKNNGSSIPE 732
              + D  RL Q+   ++SNA+ F+++GS       + +         F VK+ G  IP 
Sbjct: 873 DVIIGDGLRLRQVLVNLISNAIKFTNEGSISMSVEGLHRTGTQEFTLAFQVKDTGIGIPA 932

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F  F         +  G GLGL+I +  + L GG + + S ++  ++    IP+
Sbjct: 933 EQQHQLFMSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESREQLGSSFYFTIPT 992

Query: 791 K 791
           +
Sbjct: 993 R 993



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 96/291 (32%), Gaps = 27/291 (9%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            +  I  +++E  +   KL  +   ++ LF+     V+  +  GD L AN + ++ T   
Sbjct: 483 EIISIARDISERKMMEFKLKENEQRYRSLFEYNPSAVYSMNLDGDYLTANHNLQELTGYT 542

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--- 286
                          K+  +     + A E        T+ H +    +I  +       
Sbjct: 543 LDELVGMYFGPIVAEKDMARTLYHFNLAKEGRPQSYDLTIIHKDGHPIEINTINIPIFVD 602

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
               G  GI  D+++ I   +++         +L+ ++  I   D +  + F N +   +
Sbjct: 603 DEVVGVYGITRDITERIRTMEEIKKLSRELSLLLNTVSEGIIGLDIHGQVAFINPAGAAM 662

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET---HKDTWHLP 395
            + +       P +  + E             ++     +    +        +      
Sbjct: 663 LDYEPLTTIGRPCDQIVKEIRHDGTF------YRGEDSPLVQAVRQGTPLSRAEIVLWRG 716

Query: 396 NGQTLHVIVTSNP------RGGTIWMFENLTVQVD-LETKYNTLVKVQGET 439
           +G +       NP      R G + +F ++T + + +  K N     Q +T
Sbjct: 717 DGTSFLADYQVNPIWDQGERKGAVMVFRDITDEKEIIRAKENAERADQAKT 767



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 120/367 (32%), Gaps = 54/367 (14%)

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------IVRVLNSFGEA 289
            I E R+  +  ++K ++  +A E  +   +     G+ ++ +      +          
Sbjct: 303 VIPEDRERVESIVRKALV-GTADEVIYRIKLH---DGHIRTIRAQWEVSVTNDGRPIEMV 358

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G+A D+++++ +  Q          +T           L F +RS +E       FL  +
Sbjct: 359 GMAQDITEQVLIEQQSLDNENKYKLIT--------ENSLDFISRSTIEC----STFLYCS 406

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFS---------VYKSSETHKDTWHLPNGQTL 400
           PS   LL + R    +        + E+I S         V K        +   +G+ +
Sbjct: 407 PSCYSLLGY-RPEEMVGTSAFDYVYAEDIPSLQEYFSSCLVGKLLTPITFRYIHKDGRHI 465

Query: 401 H-------VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                   +    N R   I +  +++ +  +E K     +      ++    V     D
Sbjct: 466 WFEVNCKYISTQDNQRNEIISIARDISERKMMEFKLKENEQRYRSLFEYNPSAVYSMNLD 525

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G    +N   + L     + L  G +   I A       E D          + +   +S
Sbjct: 526 GDYLTANHNLQELTGYTLDEL-VGMYFGPIVA-------EKDMARTLYHFNLAKEGRPQS 577

Query: 514 LQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
              T+       +E + I +P   + + +  +    D     R +    E ++K     +
Sbjct: 578 YDLTIIHKDGHPIEINTINIPIFVDDEVVGVYGITRDITERIRTM----EEIKKLSRELS 633

Query: 571 SFVQHVS 577
             +  VS
Sbjct: 634 LLLNTVS 640


>gi|78222916|ref|YP_384663.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
 gi|78194171|gb|ABB31938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
          Length = 1313

 Score =  339 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 96/518 (18%), Positives = 199/518 (38%), Gaps = 41/518 (7%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             +    +       I ++   AI + D    + + N +  ++     A          L 
Sbjct: 550  AKEAAENSELQLRSITNSAHDAILMMDHQGSISYWNPAAEQILGYSAAEALGK----NLH 605

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGT- 412
            + L     L + L   +  +   S     +T +      +GQ + V ++ +     G   
Sbjct: 606  DLLTPERYLADHLTAFSEFQQTGSGNAVGKTLELFARRKDGQEIEVALSLSAVFLNGAWN 665

Query: 413  -IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             + +  ++T Q     + N  +++    ++H    + +   DGRI+  NP    +     
Sbjct: 666  AVGLLRDITEQ----KRINASLRMLSAAVEHSPVSIIITDRDGRIEYVNPKSCQMTGYAF 721

Query: 472  NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
              L           T    + ++    + +      +   +   G+L       +  SI 
Sbjct: 722  EELRGQNPRIMKGPTHPPEFYKNLWETILSGREWYGEFHNRRKDGSLV-----WVMASIS 776

Query: 532  PLPNAQTMLTFV-----NVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYE 579
            P+ + +  +T        +    + +  L           +   +A+  K+ F+  +S+E
Sbjct: 777  PIYDEKGEITHFVGVREEIEKQKKLQEELANIAQLEKVARDRAEQANRAKSEFLAGMSHE 836

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            +R+PL  IIG +DLL  ++   L+ +QS Y+  + ++   L  L+NDILDL+ ++AG+++
Sbjct: 837  IRTPLNAIIGMSDLLAETR---LDGEQSGYLSVVHSAGETLQGLINDILDLSKIEAGMLQ 893

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
            L+     L D + ++    + K     +         +    + D  RL Q+   ++ NA
Sbjct: 894  LDSVPFSLRDCIRQLTDITSVKASSKGVTYSFSVKSAVPDWLMGDSLRLRQVLINLVGNA 953

Query: 699  MDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
            + F+  G +V+L+              FSV + G  I  +   ++F  F        RR 
Sbjct: 954  VKFTDSGGSVLLEVEPVQQSDAEVLIRFSVADTGIGIAPEKLDTIFESFSQADSSTTRRY 1013

Query: 753  -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGL+I      + GG + + S+    +     +P
Sbjct: 1014 GGTGLGLAISRHLAGMMGGEIGVESTVGKGSCFRFTVP 1051



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 91/289 (31%), Gaps = 32/289 (11%)

Query: 168 ILSLDGIYSEL--------AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
              L  I  EL        AE  +  +   N     + + +S    +   D  G I + N
Sbjct: 526 FSELTAINEELEHRVTERTAELRIAKEAAENSELQLRSITNSAHDAILMMDHQGSISYWN 585

Query: 220 ISYKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV---STLEH 271
            + ++       E  G      +   R L            +       +T+   +  + 
Sbjct: 586 PAAEQILGYSAAEALGKNLHDLLTPERYLADHLTAFSEFQQTGSGNAVGKTLELFARRKD 645

Query: 272 GNN----KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           G       S   V +  ++   G+  D++++  +N  L      + +  V+I I D++  
Sbjct: 646 GQEIEVALSLSAVFLNGAWNAVGLLRDITEQKRINASLRMLSAAVEHSPVSIIITDRDGR 705

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           +++ N    ++       L            +      P +     W+  +       E 
Sbjct: 706 IEYVNPKSCQMTGYAFEELRGQNP------RIMKGPTHPPEFYKNLWETILSGREWYGEF 759

Query: 388 HKDTWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLV 433
           H       +G  + V+ + +P     G I  F  +  +++ + K    +
Sbjct: 760 HN---RRKDGSLVWVMASISPIYDEKGEITHFVGVREEIEKQKKLQEEL 805


>gi|296188236|ref|ZP_06856628.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296047362|gb|EFG86804.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 859

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 126/640 (19%), Positives = 266/640 (41%), Gaps = 65/640 (10%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L+  + +        + D+ +  +  +   G I+  N + ++     G   Q+ +G+  
Sbjct: 116 RLQKDEYTKKALQLASIADASEDAIIGKTLDGKIISWNKAAER---IFGYSEQELLGKKF 172

Query: 242 KLFKEEIKKR-MISSSALEKNFCETVSTLEHGNNKSY---KIVRVLNSFG----EAGIAI 293
            +       + + S+ +        +  +   N   Y    I  V N  G    E+ IA 
Sbjct: 173 SILDNNENNKVLCSTISKNGIKDYEIEMINRNNEVIYLSISISPVKNYSGDTVCESVIAR 232

Query: 294 DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID------- 342
           D+++   ++ +L         I     + I +FD +  +   N SF +++ +D       
Sbjct: 233 DITENKKLHKELYNSEKKFRSIYEQSPIGIELFDADGEVISSNESFCKMFNLDDIKEFKY 292

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
             F  T    + +   +R+         +K  +   F      ET+K+  +  +  T  +
Sbjct: 293 SNFFNTPHIYESVKNRIRNKKTSRITCKYKLNQRADF------ETNKNRIYYFDIVTTPI 346

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNP 461
           +         +   +++T    +E K             +LS+ +  +F  DG+    + 
Sbjct: 347 LNEKKDLTAILLQVQDITKLKTVEKKVQN--------FTNLSDDIFSIFDYDGKFLQVSA 398

Query: 462 AFRSLWKTEENRLSPGT-----HIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQ 515
               + +  E  +         H+ +I    + + Y    G  +F       +   K   
Sbjct: 399 GMNKILEWSEKDVLYKNFKDFVHLDDIQGCVNDFSYMLKCGRHIFKNRYICKNGTYKW-- 456

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             +E  S  + EYS+I            ++T  + +E  L +   A  +A+  K+ F+ +
Sbjct: 457 --IEWNSFVIKEYSLI-------YSIGRDITKRMESEDELKKAKIAAEEANIEKSRFLAN 507

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  I+G TDL   + +  L ++Q +Y+  + ASS+ LL+++NDILD++ +++
Sbjct: 508 MSHEIRTPINGIMGMTDL---TLMTELTNEQREYLNMVKASSSHLLDIINDILDISKIES 564

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSK 693
           G  KL+     L + ++++ ++I+   ++  I +    D  +  G+ + D  +L QI   
Sbjct: 565 GKFKLDLVPFNLEERISKMVKNISVLAYKKFIEVMYFIDPNISEGNIIGDPSKLDQILMN 624

Query: 694 ILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           +LSNA+ F+ +G+ ++    ++  +D     FSV + G  IPED    +F  F       
Sbjct: 625 LLSNAIKFTDRGNIIVCAKKVEGPKDKIKIQFSVSDTGIGIPEDKMDKLFKTFSQIDDSY 684

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +  G GLGLSI +  +N+  G + ++S     +     
Sbjct: 685 TKKYGGTGLGLSISKHLVNMMNGDIWVTSKHNEGSCFYFT 724


>gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
 gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
          Length = 1682

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 122/713 (17%), Positives = 258/713 (36%), Gaps = 74/713 (10%)

Query: 124  YIKLSKATEKLRKEGQS-FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
                    + +R++G + F+     ++   + +   V+     +R         ++    
Sbjct: 471  PAAFQARIDLVREQGGARFENRRRCKDGRLLDVTVDVT----IIR-QDGVDYLVDIWSDV 525

Query: 183  LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               K     I +  +  D     V   D   + ++ N ++ +N    G   ++ +G++ +
Sbjct: 526  TAQKAAEAEIRMLSMAVDQSPNTVLITDLDANTVYVNDAFSRN---NGYTREEILGQNPR 582

Query: 243  LFKEEIKKRMI-----SSSALEKNFC-ETVSTLEHGNNKSYKIVRVLNSFGEAGIA---- 292
            L       R        +    + +  E ++  ++GN +   +  V     +  +     
Sbjct: 583  LLMSGKTPRATYEAMWRALGAGEPWKGEFINRRKNGNERIKAVTIVPLRDDDGCVCNYVA 642

Query: 293  --IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-LATN 349
               D+++   + +QL      +     AI I D +  +++ N++FV          L  N
Sbjct: 643  VMEDITERRRIEEQLRKLSLAVDQSPEAIVITDLDARIEYVNQAFVHQTGFSAEEALGLN 702

Query: 350  PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL----HVIVT 405
            P+  +       + + PE    + W   +       E +       +G       ++   
Sbjct: 703  PAVLK-------SGRTPEATYREMWARLVQGESWQGELYN---RRKDGSEYVELANITPV 752

Query: 406  SNPRGGT---IWMFENLTVQVDL------------------ETKYNTLVKVQGETIDHLS 444
              P G     + + E++T +                             + Q    D  +
Sbjct: 753  RQPDGAVTHYLAIKEDITEKKRTAEELEAYRTRLEQLVASRTEALRLASEHQQAIFDTAT 812

Query: 445  EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAI 503
             G+A+   D  +   N     ++   +  +   +  I  +         ++    L+   
Sbjct: 813  SGIALI-KDRVLIRCNRRLHDIFGWPDGEMVGKSTAIWYVDEASYALGGDAVYNRLWQGE 871

Query: 504  ITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                + E     G+L    L+   ++       +  T+    ++T    A + +    + 
Sbjct: 872  AVCREQELMRRDGSLFWARLTGKAVDIHD---RSKGTVWVIDDITTEREAFQTVRNAQKL 928

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
               A   K +F+ ++S+E+R+P+  +IG T L+  +    L  +Q  Y++ I  SS  LL
Sbjct: 929  AEDAARAKANFLANMSHEIRTPMNAVIGMTHLVLNT---DLTRQQRDYLKKIQGSSQHLL 985

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
             ++NDILDL+ ++AG M + +    L+ +L  V   I+ K     + + +     +  S 
Sbjct: 986  GIINDILDLSKIEAGKMAVEHIEFDLDTVLENVTGLISEKATGKGLELIIDVGKTVPRSL 1045

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCK 736
            V D  RL Q+     +NA+ F+ +GS VI     + A  +    FSV + G  I  +   
Sbjct: 1046 VGDPLRLGQVLINYANNAVKFTERGSIVIRCDLAETAERDVVLRFSVTDTGIGIEAEQIP 1105

Query: 737  SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +F  F    +   R   G GLGL+I     ++ GG   + S     +T    
Sbjct: 1106 RLFQTFEQADNSTTRKYGGTGLGLAISRELAHMMGGEAGVDSEYGKGSTFWFT 1158


>gi|20091132|ref|NP_617207.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916235|gb|AAM05687.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 572

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 125/506 (24%), Positives = 215/506 (42%), Gaps = 29/506 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL- 356
           E  +++       +  N    I + ++N  +   N    EL       L   P  + +  
Sbjct: 61  EKAIHEGEEIYRSMFKNAANLILLVEKNGNIVDCNSRVGELLGYRRFELLGQPIRNLIFP 120

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---PRGG-- 411
           + L    K  E++  + +          S   +      +G+T+ V V S+      G  
Sbjct: 121 DCLEKIKKSSEEVENRGF----------SFNKEYRMVRKDGKTVDVNVNSSGLKDENGFH 170

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWK 468
             TI++ E++T +   E               +    + +  PD G I  +N A  + + 
Sbjct: 171 VQTIYIVEDITERKKAEKLVKENESRYRSLFQNNRAVMLLLDPDTGNILDANSAACAFYG 230

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
               ++  G +I +I         E    +    I   +   R S  G L      V  Y
Sbjct: 231 YPREKML-GLNIADINILPKEQILEELEQEKSRDINHFYFTHRLS-NGVLR----DVERY 284

Query: 529 SIIPLPNAQTM--LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           S   L   + +      ++TD+ + +  L         A + K+ F+  +S+ELR+PL +
Sbjct: 285 SYPILMGGKKLLYAIVSDITDNRKMQSELVRAKMEAEIASKAKSEFLASMSHELRTPLNS 344

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIGF+D+L T   G LN KQ +YV  IS S   LL L+N ILDL+ V+AG M+L      
Sbjct: 345 IIGFSDMLLTQNFGPLNKKQLRYVNNISVSGNHLLKLINGILDLSKVEAGKMELKVEEFS 404

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + D ++EVK  +     + +I+I  + D +L +  ADR +  QI   ++ NA+ F+ +  
Sbjct: 405 VLDSISEVKVLLTPLASKKDIQILSVVDKELTTIRADRTKFKQILYNLVDNAIKFTHEDG 464

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
            VI+ A  +       VK+ G  I +   K +F  F    +   G+++G GLGLS+V+ F
Sbjct: 465 FVIVDARVEGDQAKIMVKDTGIGISKAGVKKIFQPFTQLENSEYGKQKGTGLGLSLVKKF 524

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           + +H G + + S     +     IP 
Sbjct: 525 VEMHTGKIWVESEFGEGSKFIFTIPL 550


>gi|239905207|ref|YP_002951946.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795071|dbj|BAH74060.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 853

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 127/658 (19%), Positives = 234/658 (35%), Gaps = 70/658 (10%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TE 229
           +  +   LA        L    + ++ + ++    ++  + AG  L  N    + T    
Sbjct: 70  IVALLVALASRKQALAALGESQARYQGVVENAPAAIFIVNAAGRFLDVNPKACRLTGYDR 129

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSFGE 288
             +    IGE       +     ++         E       G  + + +  V L+    
Sbjct: 130 ETLLGLTIGEVLDQDSWQAVATYLADFKEGARIAEVSGRRRDGAKRWWSVSAVRLDGERV 189

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            G A DV++    +D  +  YE++ N    +   D++      NR++  L    L  +  
Sbjct: 190 LGFAADVTERRRRDDARSVFYELVQNAEHVVVFKDRDLRYVMVNRAYQNLTGRPLEDVVG 249

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIF-------------------SVYKSSETHK 389
               +            PEQ+      +                         ++  T K
Sbjct: 250 KTDPEAF-----EGLSAPEQIARYVENDRRALNLPRGRTLTSEEEMRGEGGGVRTFLTKK 304

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
              +  +G+ L          G   M   +T +   E +            +     +  
Sbjct: 305 FPVYAEDGRLL----------GVATMASEITERKKAEARLRESEGRYRLLAELAPVSIMA 354

Query: 450 FGPDGRIKLSNPAFRSLW--KTEENRLSPGTHIRNIAATCSRYY----------NESDGW 497
           F   GRI   N      +     +     G  + ++                   E D  
Sbjct: 355 FDAAGRIIFVNRRHLDTFAAGRRDRDYFLGRRLTDLPGIVRAGIAGKLAPLLEGREVDLE 414

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            +     T       +L+G   L  D  L         A  +L   +VT  +  ER LT 
Sbjct: 415 AVHFPEFTGGHSGYVNLRGVPFLRDDGSL---------AGGILIREDVTARIEMERTLTA 465

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                + A++ K+ F+ ++S+E+R+PL  ++G   LL+ +    L ++Q +Y +    SS
Sbjct: 466 ARNEAQAANQTKSEFLANMSHEIRTPLNGVLGMLQLLRDT---PLTAEQGEYADLAIQSS 522

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L+ DILDL+ V+AG M +   +  L   + E  +       +  + ++V  D  L
Sbjct: 523 RRLTRLLADILDLSRVEAGKMAILCESFELARAVTEAVELFRPSARQAGVELRVYVDAAL 582

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSI 730
            +    D  R  Q+ + ++ NA+ F++KGS V ++A             +FSV + G  I
Sbjct: 583 PARVAGDAARFQQVLANLVGNALKFTAKGS-VAVEAYPLPPRREGETRALFSVADTGCGI 641

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +F  FV  +       +G GLGLSI +S + L GG++++ S     TTI  
Sbjct: 642 ADADLTRLFEPFVQGSRGYSRNAQGAGLGLSICKSLVELMGGNIAVDSEVGRGTTIFF 699



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 8/160 (5%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+L +  + SE+ E      +L      +++L +     +   D AG I++ N  +    
Sbjct: 313 RLLGVATMASEITERKKAEARLRESEGRYRLLAELAPVSIMAFDAAGRIIFVNRRHLDTF 372

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-----GNNKSY---K 278
                     +G         ++  +    A      E      H     G +  Y   +
Sbjct: 373 AAGRRDRDYFLGRRLTDLPGIVRAGIAGKLAPLLEGREVDLEAVHFPEFTGGHSGYVNLR 432

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
            V  L   G     I + +++T   ++  T     N   A
Sbjct: 433 GVPFLRDDGSLAGGILIREDVTARIEMERTLTAARNEAQA 472



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 48/160 (30%), Gaps = 11/160 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G  + +   L  +                 +++    + +    GR    NP    L   
Sbjct: 68  GIIVALLVALASRKQALAALGESQARYQGVVENAPAAIFIVNAAGRFLDVNPKACRLTGY 127

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDSVLE 527
           +   L  G  I  +         + D W   A  +  F +      + G     +     
Sbjct: 128 DRETLL-GLTIGEVL--------DQDSWQAVATYLADFKEGARIAEVSGRRRDGAKRWWS 178

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            S + L   + +    +VT+  R + A +   E ++ A+ 
Sbjct: 179 VSAVRLDGERVLGFAADVTERRRRDDARSVFYELVQNAEH 218


>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
 gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
          Length = 1670

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 127/723 (17%), Positives = 259/723 (35%), Gaps = 78/723 (10%)

Query: 133  KLRKEGQSFDLVAETQN--DCAIKIEGRVSGSCAF-----------------LRILSLDG 173
            KLR  G+   +  E        +K++G V G+ A                  L + S  G
Sbjct: 451  KLRDNGEYVLIGPECNIWLGVPLKLQGEVVGAMAVQSYCESEPLDKKDFEVLLFLSSYVG 510

Query: 174  IYSE----LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--- 226
               E    + +   K + L      ++ +FD+    +   D       AN          
Sbjct: 511  FALERLYLMEQGRNKNEALKEREIKYRSIFDNASDAILLMDLNYKFFSANPEAVSMFRCG 570

Query: 227  ---ETEGIVFQKAIGESRKLFKEE---IKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
               E      +  +  +++  +     + + +  +        + +     G      + 
Sbjct: 571  SEEELLSYRPENLVAPNQREGESSSDLLDEWVGKTIDAGGLDFDLICRRSDGEEFYASVR 630

Query: 281  R----VLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHN 332
                 +  +        DV+++    +++  +  +L     +    I   D    +   N
Sbjct: 631  ARKMVISGTPFIQATLRDVTEKRRSKEEIERSVSLLTATIESSADGILAVDGYGQVVAWN 690

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
              F  +W I    L +   +D +  ++  A++L E  +     +      +S     +  
Sbjct: 691  SRFSSMWNITEHILRSGVVSD-VFGYI--ADQLEEGSSVHGLWDY---SLESEAGQIEEL 744

Query: 393  HLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             L +G+ +         G    G +W F ++T +   E +     +   + I+ L +   
Sbjct: 745  ILVDGRIVEKYSNPQRIGSDIVGRVWSFRDVTRKRLSENELRDSYQRLNDIIEFLPDPTI 804

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            V   +G +   N A   +    +  +                        L   +     
Sbjct: 805  VIDSNGVVLAWNKAVEEVTGVSKQDMIGKADYEYALPFYGERRPILIDSALKDDL-EPLT 863

Query: 509  DERKSLQGTLELLSDSVLEYSII------------PLPNA-----QTMLTFVNVTDSVRA 551
            D  +SL+    +L   V                  PL +        +    NVT+  R 
Sbjct: 864  DRYESLERRYGMLYGEVYTPRAFNGQGAYFWGVAGPLRDHSGKVVGAVECMRNVTERRRV 923

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E+ L     A   A   K+ F+ ++S+E+R+P+ +IIGF  L+++     L+S Q +Y+ 
Sbjct: 924  EQELNRARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQS---ADLDSAQREYLN 980

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + +S+  LL+++ DILD + ++AG   L      L+ +L ++   ++ K     I   +
Sbjct: 981  KMMSSADSLLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNMVSVKAESKGIDFIL 1040

Query: 672  ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNN 726
                 +  F+  D  RL Q+ + +++NA+ F+ +G   ++    +N        F V+++
Sbjct: 1041 SVGPDVPLFLRGDPLRLEQVLTNLVNNAVKFTDRGEVNLIVTCEENCTGEASIKFIVRDS 1100

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  +  +    +FN F        R   G GLGL+I  S + L GG VS+ S     ++ 
Sbjct: 1101 GIGLSSEEVSVLFNSFTQADASTTRKYGGTGLGLAIARSLVELMGGTVSVESHPGEGSSF 1160

Query: 785  NCR 787
               
Sbjct: 1161 YFT 1163


>gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 1010

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/511 (21%), Positives = 200/511 (39%), Gaps = 25/511 (4%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  V  +     ++  N  V     D    L   N++ +         L   P     
Sbjct: 367 TLEDRVEQRTMEVQDLYENAPVGYHSLDAEGLLIVLNQTQLNWLGYTREDLLGRP----F 422

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---PRGGT 412
           +E L   +    +  +  +K+       S    +      NG  + V++++       G 
Sbjct: 423 IEILSPRSIPDFEHIFPLFKQQG-----SVRDLEFEMRKKNGTLMPVLISATAVYDECGN 477

Query: 413 IWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             M      + T +   E       +     I+   + + +F   G +   N AF  +  
Sbjct: 478 YLMSRSTVFDNTERKKAELALRETEERTRLLIESSPDAIVLFSEQGEVVQLNRAFEQMTG 537

Query: 469 TEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAA-IITSFDDERKSLQGTLELLSDSV 525
               ++      HI  I    +         DL      T+ D + +   G +  ++  V
Sbjct: 538 YTSAQMLGRTPEHIGLIMPDMTWDLALMVSHDLAEHHYFTTIDLQIQRANGEMLDVAMRV 597

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
              ++   P    + T  +VT    AE  L + N AL  A   K+ F+  +S+ELR+PL 
Sbjct: 598 FGLTLQGQP--HYLATLRDVTTEKHAEEKLRQANVALAHAARTKDEFLASMSHELRTPLN 655

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G ++ L     G LN +Q   +  I AS   LL L+NDILDL+ V+AG + L    +
Sbjct: 656 AILGLSEALIEGVRGPLNERQLDALHNIEASGQHLLALINDILDLSKVEAGRLDLQIEAV 715

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            + ++       +  +  + ++R+    D ++    AD +RL Q+   +LSNA+ F+   
Sbjct: 716 SVAEVCQASLLFVKEQALKKSLRLSFHLDDQMAEMDADPRRLKQMLVNLLSNAVKFTPPK 775

Query: 706 STV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
             V   +    +    +F V++ G  I +D    +F  F         Q  G GLGL++V
Sbjct: 776 GHVNLHVTIDLEAEQIVFVVEDTGIGIAQDDLPRLFQPFKQLDSRLSRQHEGTGLGLALV 835

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                +HGG V + S     +  + ++P ++
Sbjct: 836 RRLAEMHGGGVMVESELGKGSRFSIQLPYRQ 866


>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1767

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 121/718 (16%), Positives = 261/718 (36%), Gaps = 69/718 (9%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
            L+ +H     +   + R    +       ++  A+K +G    +   L IL  D      
Sbjct: 565  LRSNHARDRLQFLREGRDRPMA-----NAKHVRALKADGGEFVAEIALSILPADNEGRRQ 619

Query: 179  AETTLK--------CKKLSNHISVFKVLFDSLDFLVWHRDQAGDI---LWANISYKKNTE 227
               +++         +K+ +    F+ L  ++   V +R + GD+    + + +    T 
Sbjct: 620  VAASIRDMTQKLAVEQKIRDSELRFRGLVTNIPGAV-YRTRIGDVWVMEYVSENIADITG 678

Query: 228  TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNNKSYK--- 278
                 F +    + +    E  + +           +    +E       G+ +      
Sbjct: 679  YAASQFIENRQRTFESLILEEDRALCHQHIDRALAQQETFEVEYRIRHRDGSVRWVHEKG 738

Query: 279  ---IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--------IFDQNRY 327
                          G   D+++      +L  + + L N+T +I         I   +R 
Sbjct: 739  KASYTDEGFPLWFDGSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWISPVDRT 798

Query: 328  LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
              F + +   +  +    L      + + E +    +           E+     +    
Sbjct: 799  FTFLSGAAYHMLGLHRDDLLK--DFNIIAERIFDEERSEVVRALAGKSEDKLQWVR---- 852

Query: 388  HKDTWHLPNGQTLHVIVTSN----PRGGTIW--MFENLTVQVDLETKYNTLVKVQGETID 441
             +  +  PNG T  +   ++      G  IW     ++T +  +E +            D
Sbjct: 853  -EFRYRHPNGSTRWMEAGASGHICDDGAIIWNGYVMDITERKAMEEELAVSEAHFKALFD 911

Query: 442  HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
              + G+      G I   N  +          L  G  I  + +   +   ++   +L  
Sbjct: 912  GSTIGIVNIDAKGVILDCNDQYCEDMGQSRESL-CGMSIFEVLSLQDKETAKAQFKELAE 970

Query: 502  AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALT 556
              +  +  ER  ++   E L    +  ++  L ++Q      +++ V++T+       L 
Sbjct: 971  GRVDHYRGERSFIRPNGEPL---WMTVNVSALFDSQKRFESAVVSMVDMTELKLLSDELL 1027

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               E    A + K  F+ ++S+E+R+P+  IIG + L   ++   L+ KQ  YVE I  +
Sbjct: 1028 VAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTE---LDKKQKNYVEKIERA 1084

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            S  LL+++NDILD + ++AG + +      L+ +L ++    + K     + +       
Sbjct: 1085 SKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPN 1144

Query: 677  LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731
            +      D  RL Q+   +++NA+ F+ +G  +    +++   D+    FSV+++G  + 
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDSGIGLT 1204

Query: 732  EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +    +F  F        R   G GLGL+I +  + L GG + + S     +T    
Sbjct: 1205 AEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFT 1262


>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1767

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 121/718 (16%), Positives = 261/718 (36%), Gaps = 69/718 (9%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
            L+ +H     +   + R    +       ++  A+K +G    +   L IL  D      
Sbjct: 565  LRSNHARDRLQFLREGRDRPMA-----NAKHVRALKADGGEFVAEIALSILPADNEGRRQ 619

Query: 179  AETTLK--------CKKLSNHISVFKVLFDSLDFLVWHRDQAGDI---LWANISYKKNTE 227
               +++         +K+ +    F+ L  ++   V +R + GD+    + + +    T 
Sbjct: 620  VAASIRDMTQKLAVEQKIRDSELRFRGLVTNIPGAV-YRTRIGDVWVMEYVSENIADITG 678

Query: 228  TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNNKSYK--- 278
                 F +    + +    E  + +           +    +E       G+ +      
Sbjct: 679  YAASQFIENRQRTFESLILEEDRALCHQHIDRALAQQETFEVEYRIRHRDGSVRWVHEKG 738

Query: 279  ---IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--------IFDQNRY 327
                          G   D+++      +L  + + L N+T +I         I   +R 
Sbjct: 739  KASYTDEGFPLWFDGSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWISPVDRT 798

Query: 328  LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
              F + +   +  +    L      + + E +    +           E+     +    
Sbjct: 799  FTFLSGAAYHMLGLHRDDLLK--DFNIIAERIFDEERSEVVRALAGKSEDKLQWVR---- 852

Query: 388  HKDTWHLPNGQTLHVIVTSN----PRGGTIW--MFENLTVQVDLETKYNTLVKVQGETID 441
             +  +  PNG T  +   ++      G  IW     ++T +  +E +            D
Sbjct: 853  -EFRYRHPNGSTRWMEAGASGHICDDGAIIWNGYVMDITERKAMEEELAVSEAHFKALFD 911

Query: 442  HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
              + G+      G I   N  +          L  G  I  + +   +   ++   +L  
Sbjct: 912  GSTIGIVNIDAKGVILDCNDQYCEDMGQSRESL-CGMSIFEVLSLQDKETAKAQFKELAE 970

Query: 502  AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALT 556
              +  +  ER  ++   E L    +  ++  L ++Q      +++ V++T+       L 
Sbjct: 971  GRVDHYRGERSFIRPNGEPL---WMTVNVSALFDSQKRFESAVVSMVDMTELKLLSDELL 1027

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               E    A + K  F+ ++S+E+R+P+  IIG + L   ++   L+ KQ  YVE I  +
Sbjct: 1028 VAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTE---LDKKQKNYVEKIERA 1084

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            S  LL+++NDILD + ++AG + +      L+ +L ++    + K     + +       
Sbjct: 1085 SKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPN 1144

Query: 677  LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731
            +      D  RL Q+   +++NA+ F+ +G  +    +++   D+    FSV+++G  + 
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDSGIGLT 1204

Query: 732  EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +    +F  F        R   G GLGL+I +  + L GG + + S     +T    
Sbjct: 1205 AEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFT 1262


>gi|221640855|ref|YP_002527117.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221161636|gb|ACM02616.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 849

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 194/495 (39%), Gaps = 30/495 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
              ++ +  +    A+FD  + L   N ++      +   +    +  +LL+   +   +
Sbjct: 86  RRLWDSIDAIEDGFAVFDAGQRLVAANEAYR--CHFEGLEVRPGMALADLLQLATTHGLI 143

Query: 366 ---PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
               E  +   W++ +   +       +      GQ L ++      G  + +  ++T Q
Sbjct: 144 DLRGEPAD--HWRQRMIRRWDEDPVEPEIVRRATGQWLRLVNRRARDGDMVSLLIDITEQ 201

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + L              ID + +G  +F    R+ L N  +R+++      L PG     
Sbjct: 202 MRL-----------RAAIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEE 250

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTML 540
           I      +    +        +       + L G  E  L     L       P+   + 
Sbjct: 251 ILRHGLAHGQFPEAAGREEEWLADRLAAFRHLGGAAEQQLDDGRWLRVIEHETPDGGRVG 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V++T+  R + AL     A   A   K++F+ ++S+E+R+P+  I+G  DLL  +   
Sbjct: 311 LGVDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETV-- 368

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  + E I +S   LL ++NDILD + ++A  + L+     L   ++EV   +  
Sbjct: 369 -LTEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQP 427

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARD 715
           K     I + +  D  L + FV D  RL Q+ + ++ NA+ F++ G      V L+ A  
Sbjct: 428 KARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPG 487

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             D   +V++ G  I  +    VF  F         +  G GLGL+I    I L  G V 
Sbjct: 488 RHDLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVW 547

Query: 774 ISSSDEGVTTINCRI 788
           + S     +    R+
Sbjct: 548 VESEPGRGSCFGFRL 562



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 102/326 (31%), Gaps = 22/326 (6%)

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD 172
           L+ E   +      L     +L    +   + A   +D  I+   R     A      L 
Sbjct: 7   LAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQ--RAVVKTALSEAEKLK 64

Query: 173 GIYSE-LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           G  S  L+E                   D+++      D    ++ AN +Y+ + E   +
Sbjct: 65  GQNSRFLSELERAHTAAVMAERRLWDSIDAIEDGFAVFDAGQRLVAANEAYRCHFEGLEV 124

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST---------LEHGNNKSYKIV-R 281
               A+ +  +L        +    A                    +     +  ++V R
Sbjct: 125 RPGMALADLLQLATTHGLIDLRGEPADHWRQRMIRRWDEDPVEPEIVRRATGQWLRLVNR 184

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                    + ID+++++ +          +  +     +FD+   L   N  +  ++  
Sbjct: 185 RARDGDMVSLLIDITEQMRLRAA-------IDAIPDGFVLFDRAERLVLCNDRYRAIYPR 237

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTL 400
               L      +E+L    +  + PE     + W  +  + ++      +   L +G+ L
Sbjct: 238 SAEALRPGAPFEEILRHGLAHGQFPEAAGREEEWLADRLAAFRHLGGAAEQ-QLDDGRWL 296

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE 426
            VI    P GG + +  ++T     +
Sbjct: 297 RVIEHETPDGGRVGLGVDITELKRQQ 322


>gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
 gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
          Length = 1447

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 138/714 (19%), Positives = 262/714 (36%), Gaps = 56/714 (7%)

Query: 109  DTDLLS----FENWLKFHHYIKLSKATEKLRKEGQSF----DLVAETQNDCAIKIEGRVS 160
              + ++    F +++       +  A +     G+ +     ++     +  +  +G V 
Sbjct: 745  PQEFVATYDTFLSYVHPDDSESVENAVKGALD-GKPYSIDHRIILAGGEERIVHEQGEVI 803

Query: 161  GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
                 +    ++G+  ++ E     K L    +  + L ++    +      G I   N 
Sbjct: 804  FGEGNVPFR-MNGVVQDITERKKVEKALELANAYNRSLIEASLDPLVTIGPDGKITDVNK 862

Query: 221  SYKKNTETE-----GIVFQKAIGESR---KLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
            + +  T        G  F     E     + +K+  ++ ++   ALE    +   T    
Sbjct: 863  ATELVTGHLRSELIGTDFSDYFTEPEKAKEGYKQVFREGLVRDYALEIQHRDGHITPVLY 922

Query: 273  NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYL 328
            N   Y+        G    A DV++       L     +   ++      +     +  +
Sbjct: 923  NASVYRDKD-WEVIGIFAAARDVTEYKRAEKALKLANAYNRSLIEASIDPLVTIGPDGKI 981

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
               N S   +       L       + L++     K  E      ++  +   Y     H
Sbjct: 982  TDVNNSTESITGYSRNELIG----TDFLDYFTEPEKAREGY-QHVFQNGLVRNYPLEILH 1036

Query: 389  KDTWHLPNGQTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            K     P     +  V  +  G  I +F    ++T     E K  TL       ++  ++
Sbjct: 1037 KCGHLTP--VLYNASVYRDETGKVIGVFAAARDITELKKAEEKIQTL----ANVVESSND 1090

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
             +     DG I   N     ++               +           +       ++ 
Sbjct: 1091 AIITESLDGIITSWNKGAEQVYGYLA---------EEVMGKNMSILESDNLKGEIKQLVD 1141

Query: 506  SFDDERKSL-QGTLELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERA----LTE 557
                 +K     TL L  D  +     ++ P+ +    L  ++       E+     L  
Sbjct: 1142 RVKQGKKVQNHETLRLKKDGTILNISVTLSPVFDVSGKLVAISNIAGDITEKKISENLLH 1201

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            + +    A+  KN F+ ++S+ELR+PL +IIGF+D+L     G LN KQ + +  IS+S 
Sbjct: 1202 EKQMAEIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGELNRKQLRAIGNISSSG 1261

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LLNL+N ILDL+ ++A  M+LNY    L   L  ++  +     + NI I++  D +L
Sbjct: 1262 KHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVADKKNIDIEIDMDTEL 1321

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                AD ++  +I   ++ NA+ FS + S V + A ++      +V + G  I  +    
Sbjct: 1322 TKICADEEKFTRIMYNLVDNAIKFSYENSLVKIGARKNGNLVEITVTDAGIGIKAEDQHK 1381

Query: 738  VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  F         + +G GLGLS+V+  +NLHGG+V   S     +T    IP
Sbjct: 1382 LFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGEGSTFAFAIP 1435



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 119/360 (33%), Gaps = 52/360 (14%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
              E ++     +        +K  FD++  L+   D    ++ AN +        G+  
Sbjct: 415 EQIESSKRKRAEETALQAAKDWKYTFDAVPDLIAIIDTEYKVVRANRA---MAAKLGVTP 471

Query: 234 QKAIGES--RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-------N 284
           ++ +G +  R +              L K+  E  + +       Y +V           
Sbjct: 472 EECVGLTCYRAIHGTNEPPSFCPHRQLLKDGIEHTTEVCEDCLGGYFLVSTSPLHDSEGK 531

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWE 340
             G   +A D+S+     + L  +      L       IA FD+     + N   VE+++
Sbjct: 532 LIGSVHVAHDISERKQAEEALIRSENEFRTLAENSPDLIARFDRQNRHLYINPVSVEIYD 591

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK--SSETHKDTWHLPNGQ 398
                   +P    + +      + PEQ+ +  W+E+   V+     ET +  +  P G+
Sbjct: 592 --------HPQEKVIGKTHSELGRDPEQIKF--WEEHHEKVFAIGKPETMEFEYTSPQGK 641

Query: 399 TLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
             +      P          + +  ++    + E +         ET+D+L E V     
Sbjct: 642 KYYFNTRIVPEFVDGEVTSVLAISRDIADIKEAEIRLK-------ETLDNLEELV----- 689

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC-----SRYYNESDGWDLFAAIITSF 507
           + R      A+RSL K  E  L+    I ++            Y   + + +F      F
Sbjct: 690 EDRTTQLEKAYRSL-KESEKGLAEAQKIAHLGNWNWNIVTDELYWSDEIYRIFGCTPQEF 748



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 86/279 (30%), Gaps = 15/279 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E T              +   IAI D    +   NR+         A L   P     L
Sbjct: 425 AEETALQAAKDWKYTFDAVPDLIAIIDTEYKVVRANRAM-------AAKLGVTPEECVGL 477

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD----TWHLPNGQTLHVIVTSNPRGGT 412
              R+ +   E  ++   ++ +    + +    +     + L +   LH   +     G+
Sbjct: 478 TCYRAIHGTNEPPSFCPHRQLLKDGIEHTTEVCEDCLGGYFLVSTSPLH--DSEGKLIGS 535

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +  +++ +   E              ++  + +A F    R    NP    ++   + 
Sbjct: 536 VHVAHDISERKQAEEALIRSENEFRTLAENSPDLIARFDRQNRHLYINPVSVEIYDHPQE 595

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSII 531
           ++   TH           + E     +FA     + + E  S QG     +  ++    +
Sbjct: 596 KVIGKTHSELGRDPEQIKFWEEHHEKVFAIGKPETMEFEYTSPQGKKYYFNTRIVP-EFV 654

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                  +    ++ D   AE  L E  + L +  E + 
Sbjct: 655 DGEVTSVLAISRDIADIKEAEIRLKETLDNLEELVEDRT 693



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 13/161 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   E       K    T D + + +A+   + ++  +N A  +              
Sbjct: 420 SKRKRAEETALQAAKDWKYTFDAVPDLIAIIDTEYKVVRANRAMAAKLGVTPEEC----- 474

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT- 538
              +  TC R  + ++    F        D  +      E         S  PL +++  
Sbjct: 475 ---VGLTCYRAIHGTNEPPSFCPHRQLLKDGIEHTTEVCEDCLGGYFLVSTSPLHDSEGK 531

Query: 539 ----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
               +    ++++  +AE AL       R   E     +  
Sbjct: 532 LIGSVHVAHDISERKQAEEALIRSENEFRTLAENSPDLIAR 572


>gi|332702022|ref|ZP_08422110.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 946

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 139/811 (17%), Positives = 280/811 (34%), Gaps = 103/811 (12%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET---------------- 92
               ++       L+E         S+        I+ +  D +                
Sbjct: 16  KRAQEQNARLRKRLAEAEKSEQLLKSIFEYIPEGLIIAEVPDASIRAISRHGLSLFDRPR 75

Query: 93  --------PEIIGQLHQR--IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFD 142
                   PE+I +        + Q + D L     +     ++  +    LR +G+   
Sbjct: 76  EAILGCTGPEVIKEWKVFHPDGVTQAEYDELPLIRAMTNGEDVREEEWI-ILRPDGK--K 132

Query: 143 LVAETQNDCAIKIEGRVSGS-CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
           +            EG ++G   A++          E  +     + L    + ++  F++
Sbjct: 133 IPVLINAGPIRGKEGTITGGVLAWI----------ETEKRKQLEEALRESEARYRSFFEA 182

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM----ISSSA 257
              +V      G IL AN +     E  G   ++ I + R++F +    R+       + 
Sbjct: 183 SRDVVLLTSPEGSILAANKA---AQEMYGATEEELIEKGRQVFVDTSDPRLGAFLEERTR 239

Query: 258 LEKNFCETVSTLEHGNNKSYKI-----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-- 310
                 E  S  + G     +        +        I  D+++       L  + +  
Sbjct: 240 TGSARGEYRSRRKDGTLFPTEASSGVFTTMDGILRTTTILRDITERKRAEQALRESEDLL 299

Query: 311 --ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             +L  L V + I D    +   N +   +W    A  A     DE   +   + +  E 
Sbjct: 300 SRVLDALPVGVFIADAQGGIARVNPAGERIWG--GARRAPLDRLDEYKGWWADSGRRIEA 357

Query: 369 LNW---KTWKENIFSVYKSSETHKDTWHLPNGQ--TLHVIVTSNPRGGTIWMFENLTVQV 423
             W   + ++    S+ +  +           +   + V   S      I + E+++ + 
Sbjct: 358 REWAFARAFERGETSMNEIIDIECFDGARKTIRNAAVPVRDASGRIISAIAVIEDISAER 417

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             +              ++  + +  + PD      NP+                     
Sbjct: 418 RAQEALRNREVQYRALAENSPDMIVRYSPDLHYLYVNPSIEHAVGIPPEAFKGK------ 471

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQG-TLEL---LSDSVLEYSIIPLPNAQ-- 537
                R        DL  +I  +    RK+ Q  TLE     S     +  +  P A   
Sbjct: 472 -----RIGQLGLPKDLQCSIAKAVHAVRKTGQEQTLEWSWETSVGTKHFQTMFAPEASRD 526

Query: 538 -----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +     +T   R E  L    +A  +A+  K+ F+ ++S+E+R+P+  I+G  +
Sbjct: 527 GGVDSVLTISREITSLRRLEEDLRRARDAAEEANRAKSQFLANMSHEIRTPMNGIMGMVE 586

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L     +G  +++  +Y+ Y   S+  LL++VNDILDL+ ++AG M+L  S     ++L 
Sbjct: 587 LAL---MGCKDARSREYLGYAKNSAVNLLDIVNDILDLSKIEAGRMELEKSVFRPREMLE 643

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---V 708
            +     ++  +  +R K   D  +    V D  RL QI + ++ NA+ ++ +G     V
Sbjct: 644 SLFAIQGSQAEQKGLRFKTHVDPNVPKRLVGDEGRLRQILTNLVGNAVKYTREGEVAVFV 703

Query: 709 ILKAARDNGD-----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
             +  + + +            +FS+++ G  I  D    +F  F   A   +  G GLG
Sbjct: 704 TAEVLKQDQEQGEHRRADLVSLVFSIRDTGIGIAPDKLPRIFEPFTRGAQDAEFGGTGLG 763

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  + L  G + + S+    +T    +
Sbjct: 764 LTITKQLVELMNGRIDVRSTLGQGSTFTVSL 794


>gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 778

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 126/706 (17%), Positives = 256/706 (36%), Gaps = 46/706 (6%)

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG-RVSGSCAFLRILSLDGI 174
               +     +L  A       G           D    + G R+     F  +  +   
Sbjct: 83  GRGTEDDAAERLEGAL-----LGTP--TEIRLGRDRWGLVHGHRLKDGALFCVLRDITAS 135

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-------- 226
            +  A      +++    S  +   +S+D   +  D +  ++  N               
Sbjct: 136 KAGAARIAESNRRIREAESRLERALESIDQGFYLCDASDTVVLRNAKLAHLLPGLPPLEP 195

Query: 227 -ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN- 284
             T G +   A            + R +S      +        E+G  +  ++   L  
Sbjct: 196 GTTYGAMMAAACDNGAIPAATRHRTRWLSLCMARHHLPRGAWDFENGRGRWVRVSESLTP 255

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWE 340
             G  G+  D+++    ++Q+    + L      +   I + D+N  ++  N +   L+ 
Sbjct: 256 EGGRVGLLTDITETRKASEQVRQREQRLDGIMKTVVDGIVVIDENGIIESFNPAAERLFG 315

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                +     N  +       +    +   +T +  I    +     ++     +G  L
Sbjct: 316 YRAEEVVGASINRLIPGGESGRHDRSLRRYLQTGQAGIIGRGR-----EELALRRDGSLL 370

Query: 401 HVIV-----TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            V +       + R     +  +++ + + + +     +     I    E +  +  D  
Sbjct: 371 PVELAISELRLDDRRIFTGLVRDISARKEADRQLRENEERYALAIAGTHEAIVDWDIDSD 430

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSL 514
               +    ++   +   L        +     R    +    L     + F  D R + 
Sbjct: 431 TITYSDRITAIVGLDPKDLDRSASWIALIHPDHRKDYLTRMDALLRGESSFFSCDFRLAG 490

Query: 515 QGTLELLSDSVLEYSIIPL--PNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIK 569
           +   E   +  L +    L  P+ Q         ++TDS R E  L E  EA   A+  K
Sbjct: 491 RAGAE---ERWLRHRATALRRPDGQIYRLSGAVGDITDSRRGEDRLREAKEAAEFANRAK 547

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDIL 628
           + F+ ++S+ELR+PL  IIGF+++L +   G L + Q   Y   I  S   LL+++NDIL
Sbjct: 548 SEFLTNMSHELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVINDIL 607

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG   L    +   +++  V + +  +     +R+K+  D  L   + + +RL 
Sbjct: 608 DVSRIEAGRATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEARRLK 667

Query: 689 QIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           Q+   +L NA+ F+  G  + L A    D G  +  V ++G  +  +        F    
Sbjct: 668 QVLINLLGNAIKFTPAGGEIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPFRQID 727

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +   +  G GLGL + ++F+ LHGG + + S+    T I  R+P+
Sbjct: 728 GQLARRYEGTGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLPA 773



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 81/276 (29%), Gaps = 22/276 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           +   +I  +L   +A++  +  L   NR F  L E      A      E+L  L + +  
Sbjct: 11  SRLIDIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEILRDLVAPDTG 70

Query: 366 PEQL-------NWKTWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
            E         + +  +++     + +   T  +     + +   V       G    + 
Sbjct: 71  EENRADSGPDDDGRGTEDDAAERLEGALLGTPTEIRLGRD-RWGLVHGHRLKDGALFCVL 129

Query: 417 ENLTVQV-------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            ++T          +   +           ++ + +G  +      + L N     L   
Sbjct: 130 RDITASKAGAARIAESNRRIREAESRLERALESIDQGFYLCDASDTVVLRNAKLAHLLPG 189

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI---ITSFDDERKSLQGTLELLSDSVL 526
                   T+   +AA C      +        +   +      R +     E      +
Sbjct: 190 LPPLEPGTTYGAMMAAACDNGAIPAATRHRTRWLSLCMARHHLPRGAWD--FENGRGRWV 247

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             S    P    +    ++T++ +A   + ++ + L
Sbjct: 248 RVSESLTPEGGRVGLLTDITETRKASEQVRQREQRL 283



 Score = 38.0 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L     +  DHL EGVA++GPD R+   N  F SL +T   R +PG  +  I     R  
Sbjct: 9   LDSRLIDIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEIL----RDL 64

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
              D  +   A     DD R +     E L  ++L
Sbjct: 65  VAPDTGEENRADSGPDDDGRGTEDDAAERLEGALL 99


>gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 897

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 133/649 (20%), Positives = 250/649 (38%), Gaps = 59/649 (9%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET---------- 228
                    L+   +  + LF      +      G  L  N ++ +              
Sbjct: 22  HRLQQLETALAESENRLRDLFHLAPIGIAEISTEGYFLAVNRAFCRWVGYSQADLINLNF 81

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
             I   +     R+ F + I + +   +  ++        +        ++  + N    
Sbjct: 82  NAITHPEDGDICREKFGQLINREIDKYTLEKRYRHRDGHWVYGILTCYLRLDVMGNPLCA 141

Query: 289 AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQF--HNRSFVELWEID 342
               ID+++      ++    E    +L N+   +  F ++  L F   NR++ E   +D
Sbjct: 142 IAQIIDITERKRSEQEIREKEEYLRLLLDNIPQQV--FWKDTNLVFRGCNRNWAEAAGLD 199

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-----PNG 397
            +      ++ +L      A         + ++E    V +S     +         P G
Sbjct: 200 GSESVVGKTDFDLFADADIA---------EFYREKDRQVLESRTPEMNVVAPKQKLGPGG 250

Query: 398 QTLHVIVTSNP----RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           + + + V+  P    +G   G + + E++T + +++ K      +   +ID   + V   
Sbjct: 251 RRIWLDVSRIPMLDSQGNVLGILGVLEDITERKEIDEKLR----LTQFSIDKSRDYVLFS 306

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-- 508
             +GR    N A   +    +  L     + +I    S         DL      +F+  
Sbjct: 307 DINGRFFYVNEAACKILGYSQEELLT-MEVEDIDPLASPGGWSIAWDDLRDQGSFTFESS 365

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              K+ Q     ++ S LEY+              ++ D  + E AL +  EA   A   
Sbjct: 366 HYTKTGQAIAVEITLSYLEYN----HREYGCAVVRDIRDRKQTEIALQQAKEAAETASRA 421

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTILLNLVN 625
           K+ F+  +S+ELR+PL  I+GFT L++     S N   S   +++E I  S   LL L+N
Sbjct: 422 KSEFLARMSHELRTPLNAILGFTQLMERELYHSPNIPLSDHKEHLEIIGRSGEHLLELIN 481

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           D+L+++ ++AG + LN +   L  LLN +++ +        + +    D  + +   AD 
Sbjct: 482 DVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDNIPTYIYADE 541

Query: 685 QRLLQIFSKILSNAMDFSSKGSTV-ILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFN 740
           Q+L Q  + +L NA+ F+ +G  +  +K  +   D G   F V++ G  I       +F 
Sbjct: 542 QKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLFE 601

Query: 741 RFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F      R  ++G GLGLSI + FI L GG + +SS     T     I
Sbjct: 602 PFSQTETGRNSQQGTGLGLSITQKFIGLMGGEIQVSSERGKGTIFRFDI 650



 Score = 67.3 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 94/279 (33%), Gaps = 23/279 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++ E     +++       ++L D++   V+ +D        N ++ +    +G   +  
Sbjct: 147 DITERKRSEQEIREKEEYLRLLLDNIPQQVFWKDTNLVFRGCNRNWAEAAGLDG--SESV 204

Query: 237 IGE-SRKLFKEEI--------KKRMISSSALEKNFCETVSTLEHGNNK-SYKIVRVL--- 283
           +G+    LF +           ++++ S   E N       L  G  +    + R+    
Sbjct: 205 VGKTDFDLFADADIAEFYREKDRQVLESRTPEMNVVAPKQKLGPGGRRIWLDVSRIPMLD 264

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
              N  G  G+  D+++   ++++L  T   +      +   D N    + N +  ++  
Sbjct: 265 SQGNVLGILGVLEDITERKEIDEKLRLTQFSIDKSRDYVLFSDINGRFFYVNEAACKILG 324

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                L T     E+ +    A+     + W   ++     ++SS   K    +    TL
Sbjct: 325 YSQEELLT----MEVEDIDPLASPGGWSIAWDDLRDQGSFTFESSHYTKTGQAIAVEITL 380

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             +  ++   G   +  ++  +   E       +     
Sbjct: 381 SYLEYNHREYGCA-VVRDIRDRKQTEIALQQAKEAAETA 418


>gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 972

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 127/651 (19%), Positives = 250/651 (38%), Gaps = 52/651 (7%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ-AGDILWANISYKKNTETE 229
           L  +   +A       +LS     F+ LF          +  +G I+    +        
Sbjct: 193 LAAVAIMMAYMEALQAELSRSEKRFRSLFHGNKAPFLLIEPFSGQIM---DASAGAVGFY 249

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV----STLEHGNNKSYKIVRVLNS 285
           G   ++  G +         + + S   L  +  +        L++G+ K+ +++     
Sbjct: 250 GYSLEELKGMNISQINMLAPEELASVRTLALSGYKQQFIFPHKLKNGDVKTVEVISTPVE 309

Query: 286 FGE----AGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVE 337
            GE      I  DV+      + L  + E L     N   AI + D++      N +   
Sbjct: 310 SGEKELLFSIVQDVTARQQALEDLGESRERLRAVVENAAAAIYLADKSGRFVEVNAAAER 369

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
                   L      D     + +++ +      +   ++   +     T +      +G
Sbjct: 370 QTGYAREELLAMSIPD-----VDASSSMEGAAVVQAVMQSATGM-----TFESHHRRKDG 419

Query: 398 QTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
               V V +     +     + +  +LT + + E K     +     +D +   V V   
Sbjct: 420 TIYPVEVRAVMLELHGVPHALGIVSDLTSRKEAERKLAEANRTLAAVLDGIPALVNVVDV 479

Query: 453 DGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             R +   N A +     +          R  +  C   + E    +       S  ++R
Sbjct: 480 STREVLFMNRALKEALGRDGVGGVCHDVFRGKSCVCENCHLERMSVNTEGEAGVSVWEDR 539

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIK 569
             + G  +L  D +L     P  + +T+   +  ++    +AE AL +  E    A++ K
Sbjct: 540 NPISGRWQLNHDRLL-----PWFDGKTVRVQISLDIGQRKQAEEALRQSKEEAESANKAK 594

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+PL  I+G   LLKT+     N +Q +Y+     S+  L  L++DILD
Sbjct: 595 SVFLANMSHEIRTPLNGILGMLQLLKTT---DPNDEQKEYLLGAIRSTNRLTRLLSDILD 651

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
           ++ ++AG M++  +   +  + + + +    +     + ++   +  L    + D  RL 
Sbjct: 652 VSRIEAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRWNDNLPLRLIGDEVRLR 711

Query: 689 QIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           QI   ++ NA+ F+ KG T+ +      +A+  +   + +V + G  I E+  K +F  F
Sbjct: 712 QILFNLVGNAIKFTEKG-TIRIDACLLPRASDSSVRVLVTVGDTGIGISEEHLKDIFEPF 770

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           V       RR  G GLGLSIV   + L  G +SI S+    +T    +P K
Sbjct: 771 VQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGSTFYLSLPFK 821


>gi|77464934|ref|YP_354438.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389352|gb|ABA80537.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 849

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 194/495 (39%), Gaps = 30/495 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
              ++ +  +    A+FD  + L   N ++      +   +    +  +LL+   +   +
Sbjct: 86  RRLWDSIDAIEDGFAVFDAGQRLVAANEAYR--CHFEGLEVRPGMALADLLQLATTHGLI 143

Query: 366 ---PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
               E  +   W++ +   +       +      GQ L ++      G  + +  ++T Q
Sbjct: 144 DLRGEPAD--HWRQRMIRRWDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQ 201

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + L              ID + +G  +F    R+ L N  +R+++      L PG     
Sbjct: 202 MRL-----------RAAIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEE 250

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTML 540
           I      +    +        +       + L G  E  L     L       P+   + 
Sbjct: 251 ILRHGLAHGQFPEAAGREEEWLADRLAAFRHLGGAAEQQLDDGRWLRVIEHETPDGGRVG 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V++T+  R + AL     A   A   K++F+ ++S+E+R+P+  I+G  DLL  +   
Sbjct: 311 LGVDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETV-- 368

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  + E I +S   LL ++NDILD + ++A  + L+     L   ++EV   +  
Sbjct: 369 -LTEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQP 427

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARD 715
           K     I + +  D  L + FV D  RL Q+ + ++ NA+ F++ G      V L+ A  
Sbjct: 428 KARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPG 487

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             D   +V++ G  I  +    VF  F         +  G GLGL+I    I L  G V 
Sbjct: 488 RHDLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVW 547

Query: 774 ISSSDEGVTTINCRI 788
           + S     +    R+
Sbjct: 548 VESEPGRGSCFGFRL 562



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 102/326 (31%), Gaps = 22/326 (6%)

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD 172
           L+ E   +      L     +L    +   + A   +D  I+   R     A      L 
Sbjct: 7   LAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQ--RAVVKTALSEAEKLK 64

Query: 173 GIYSE-LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           G  S  L+E                   D+++      D    ++ AN +Y+ + E   +
Sbjct: 65  GQNSRFLSELERAHTAAVMAERRLWDSIDAIEDGFAVFDAGQRLVAANEAYRCHFEGLEV 124

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG---------NNKSYKIV-R 281
               A+ +  +L        +    A            E             +  ++V R
Sbjct: 125 RPGMALADLLQLATTHGLIDLRGEPADHWRQRMIRRWDEDPVEPEIVRRCTGQWLRLVNR 184

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                    + ID+++++ +          +  +     +FD+   L   N  +  ++  
Sbjct: 185 RARDGDMVSLLIDITEQMRLRAA-------IDAIPDGFVLFDRAERLVLCNDRYRAIYPR 237

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTL 400
               L      +E+L    +  + PE     + W  +  + ++      +   L +G+ L
Sbjct: 238 SAEALRPGAPFEEILRHGLAHGQFPEAAGREEEWLADRLAAFRHLGGAAEQ-QLDDGRWL 296

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE 426
            VI    P GG + +  ++T     +
Sbjct: 297 RVIEHETPDGGRVGLGVDITELKRQQ 322


>gi|329851158|ref|ZP_08265915.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840004|gb|EGF89576.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 1409

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 130/716 (18%), Positives = 259/716 (36%), Gaps = 58/716 (8%)

Query: 103  IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGS 162
            I  PQ+    L+   W+       L  A E   +   +F     +     +   G     
Sbjct: 714  ISAPQSR---LAGNAWVVVRQMRVLDHAWELRLEPTAAFVAAQRSPLPVIVLFAGLTIAI 770

Query: 163  CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
             A L + +L       A+  L  +           + D++   V   D  G I   N + 
Sbjct: 771  LAALSVNALMLARLRAADLELARRNSEQEALRTAAVLDTVLDGVLTVDIEGMITSINPA- 829

Query: 223  KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG--------NN 274
                E  G   +  +G+   L   E ++      + + +     +T   G        N 
Sbjct: 830  --GVEIFGYAAEDIVGQPASLLMIEPQRLFTERYSAQPDNRGRFATSILGLETLARRQNG 887

Query: 275  KSYKIVRVLNSFGEAGIAI------DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQ 324
            + + I   +++   +G A+      D+++       L+ T E    ++ N   A+A+FD+
Sbjct: 888  ELFPIDLSVSAMRLSGKAVFVTTVRDITERKRQEIALSVTVEQLKLLIENTPAAVAMFDK 947

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY-- 382
                   +  +++ + +    +      D            PE  N   W +        
Sbjct: 948  GLRCIMASHRWLQDYNLVGTEIIGRHHYDIF----------PEIRNMPHWVDIHRRALCG 997

Query: 383  KSSETHKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKV 435
            +  ++ +++W   +G+   +    +P        GG +   E +T +   E    T  + 
Sbjct: 998  EVFDSREESWQRVDGEREWLNWAIHPWTGPDGDTGGIVMFTEVITPRKQAEIALMTSEET 1057

Query: 436  QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                +++ S G+A+  P+GR    N A  +L    E      + ++++        + + 
Sbjct: 1058 FRSAMENASIGMALVSPEGRWLKVNTALCALLGYAELEFL-ASDVQSLTHADDLEGDRAQ 1116

Query: 496  GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
               L    I S+  E++       ++   +   S++   + Q       + D  +     
Sbjct: 1117 ADRLLGDEIESYTLEKRYFHRNGHVI-WGLQSVSLVRKSDGQPDYFIAQIQDITQRR--- 1172

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                    + + I++ FV   S+ELR+PLT I G   +L       L     + V+    
Sbjct: 1173 --------EMEHIQSEFVSVASHELRTPLTAIHGSLGMLAGPMASQLPETAGRMVDLAHR 1224

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +S  LL LVNDILD+  + +G M+ +     L +L+ +  ++         + + +    
Sbjct: 1225 NSERLLGLVNDILDIDKLTSGQMRFDMQVESLAELVAQSVEANQPFADRYGVSMHLSPVD 1284

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                   D  R  Q+ + +LSNA  FS +   + +    ++G    +V ++G  IPE   
Sbjct: 1285 AGLRARLDGDRFAQVMANLLSNAAKFSHREGRIDIDVQIESGQVRITVTDHGVGIPEAFR 1344

Query: 736  KSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F RF          + G GLGL I    +   GG +   S +   T+   ++P
Sbjct: 1345 GKIFERFSQADSSMTRNKGGTGLGLYIARQMVERMGGQLGFDSVEGEGTSFWIKLP 1400


>gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 919

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 212/552 (38%), Gaps = 45/552 (8%)

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIAI-----DVSKEITVNDQL---THTYEILHNLT 316
           +V       +  +++  V      A + +     DVS++    + L        ++ NL 
Sbjct: 132 SVERPGGKESFLFEVGEVFRDDSGAALRVVSVVQDVSEQKEAENALFFENRYRGLIENLP 191

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             I + D N      N SF     ++ + +      D            PE    +   +
Sbjct: 192 QRIFLKDCNSVYLSCNSSFARDLGVEPSDVFGKTDYDLFA---------PELAKKRQEDD 242

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNT 431
                  ++    +     +G  +   +             + +  ++T +   E +   
Sbjct: 243 GKVMAGGAAVERDEQRER-DGAWISKALIPLRDDNDRVYALLGILTDITFRKRAEEQLRE 301

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +      +  + G+      G +   N  F  +   E+  L  G  +        R  
Sbjct: 302 SEERFRSIFEQAAVGICHLTLSGELIRINRRFCDILGYEQEELL-GWSLEQTIHPDDREA 360

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII------PLPNAQTMLTFVNV 545
            +     L +  I ++  E + ++       D+ +  ++       P    + +   +  
Sbjct: 361 EQRQAARLLSREIDNYSIEIRQMRH-----DDTPVWVNLTKSLVCGPKGEPKYLAGIIED 415

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             + R    L  + + ++ A   K+ F+ ++ +E+R+PL  ++G + L   ++   L+ K
Sbjct: 416 VTANREAEELRHERDLVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTE---LDRK 472

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  Y+E I +SS  LLN++NDILD + ++AG ++L  + + L ++L  +     +K  E 
Sbjct: 473 QRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLELEKTDLNLYEVLGNISDMHQSKAQEK 532

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI 720
            I  +V     L +  V D  RL Q+ + +++NA+ F+ KG  V+    L+   +     
Sbjct: 533 GIEFRVRLAPDLPNKLVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRREEEEVVVH 592

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I  +    +F  F        RR  G GLGLSI    + L GG + + S  
Sbjct: 593 FCVQDTGIGIAPEQMGKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMGGELQVESVP 652

Query: 779 EGVTTINCRIPS 790
              ++ +  +P 
Sbjct: 653 GSGSSFSFTVPL 664



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 86/298 (28%), Gaps = 37/298 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVF------KVLFDSLDFLVWHRDQAGDILWANIS 221
                G    +        +     +        + L ++L   ++ +D     L  N S
Sbjct: 150 FRDDSGAALRVVSVVQDVSEQKEAENALFFENRYRGLIENLPQRIFLKDCNSVYLSCNSS 209

Query: 222 YKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           + +     G+      G++   LF  E+ K+              V   E        I 
Sbjct: 210 FAR---DLGVEPSDVFGKTDYDLFAPELAKKRQEDDGKVMAGGAAVERDEQRERDGAWIS 266

Query: 281 RVLNS--------FGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
           + L          +   GI  D++     E  + +       I     V I     +  L
Sbjct: 267 KALIPLRDDNDRVYALLGILTDITFRKRAEEQLRESEERFRSIFEQAAVGICHLTLSGEL 326

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NR F ++   +   L        L + +   ++  EQ             Y  S   
Sbjct: 327 IRINRRFCDILGYEQEELLG----WSLEQTIHPDDREAEQRQAARLLSREIDNY--SIEI 380

Query: 389 KDTWHLPNGQTLHVIVTSN----PRG---GTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +   H  +   + V +T +    P+G       + E++T   + E   +    VQ  +
Sbjct: 381 RQMRH--DDTPVWVNLTKSLVCGPKGEPKYLAGIIEDVTANREAEELRHERDLVQAAS 436


>gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
 gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
          Length = 911

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 109/533 (20%), Positives = 205/533 (38%), Gaps = 59/533 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S    + D        +      +  ++      F   S   +  +D A   T  +  + 
Sbjct: 336 STRQQLEDNEQRFRVAIEGARCGVWDWNPEADTVFVTDSLARILGLDAA---TECTGQQF 392

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----- 410
           L       +L  + + +  +  +      +E   +     +   L +     P G     
Sbjct: 393 L-------QLFSKPDRERLRAAMRGAPAGAEVDHEVLAARSPVWLQMRGRILPGGEANHT 445

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             I +  ++T +   + +           ++ +SE   ++    R+ L N  FR L+   
Sbjct: 446 RIIGVAIDVTERKGAQARVAAAENRLRAALESMSESFVLWDSRQRLVLWNRKFRDLFDFT 505

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           +  L PG     +    +R            AI T            +EL +   L YS 
Sbjct: 506 DGMLKPGMSYDAVEQAAAR------------AIKTVHGGSEGKAAYEIELSNGRWLHYSD 553

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------------- 565
            P  +   +    ++TD    E ALTE    LRK                          
Sbjct: 554 RPTADGGLVSVGADITDLKHHEAALTENESQLRKTVDDVKRSQARIADLAKKYEEEKIRA 613

Query: 566 ---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621
              +  K+ F+ ++S+ELR+PL  I GF++++     G L + +   Y++ I +S   LL
Sbjct: 614 EEANRSKSEFLANMSHELRTPLNAINGFSEIMMQEMFGPLGDDRYVGYMKDILSSGRHLL 673

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILD++ ++AG M+L       ++L+ +  + +  +  E  ++++      L    
Sbjct: 674 ELINDILDMSKIEAGKMQLQPEPTDASELVEQSIRIVRGRAEEKQLKLRADV-SDLPEIE 732

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +   Q+   ++SNA+ F+ +G  V ++         F V + G  I +D    +   
Sbjct: 733 VDPRAFKQVMINLVSNAVKFTPEGGRVTVRGFLSGLGVAFQVSDTGIGIAKDDLPRLGRP 792

Query: 742 FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F    + H    +G GLGL++ +S I LHGG +SI S     TT++  +P  +
Sbjct: 793 FEQIESQHSKSFQGSGLGLALSKSLIELHGGTLSIDSVLGEGTTVSVVLPISQ 845



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 97/276 (35%), Gaps = 26/276 (9%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++       ++L ++   F+V  +     VW  +   D ++   S  +    +       
Sbjct: 330 QMGRLRSTRQQLEDNEQRFRVAIEGARCGVWDWNPEADTVFVTDSLARILGLDAATECTG 389

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-SYKIVRVLNSFGEA------ 289
             +  +LF +  ++R+ ++        E    +    +    ++   +   GEA      
Sbjct: 390 -QQFLQLFSKPDRERLRAAMRGAPAGAEVDHEVLAARSPVWLQMRGRILPGGEANHTRII 448

Query: 290 GIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G+AIDV++      ++          L +++ +  ++D  + L   NR F +L++     
Sbjct: 449 GVAIDVTERKGAQARVAAAENRLRAALESMSESFVLWDSRQRLVLWNRKFRDLFDFTDGM 508

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L    S D +           EQ   +  K  +    +    ++    L NG+ LH    
Sbjct: 509 LKPGMSYDAV-----------EQAAARAIK-TVHGGSEGKAAYEIE--LSNGRWLHYSDR 554

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
               GG + +  ++T     E           +T+D
Sbjct: 555 PTADGGLVSVGADITDLKHHEAALTENESQLRKTVD 590


>gi|253570165|ref|ZP_04847574.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840546|gb|EES68628.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 931

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 122/656 (18%), Positives = 254/656 (38%), Gaps = 53/656 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDI-----LW 217
              SL  I S   E      ++    S    LF  +      +   RD+ G +       
Sbjct: 288 WFSSLANIISICIELRKAKDRVVREQSFLSNLFHFMPLGYIRMSVVRDENGQLLDYKITD 347

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN-FCETVSTLEHGNNKS 276
            N +  +        +   +    +++ +   + +     L+ N + E           +
Sbjct: 348 VNKACSRFFARPAETYIGVLAS--EIYPDFSSQLLFLKEVLDNNSYREKDIFFPQTELYT 405

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
           + IV         G+  D ++ +  N  L  + +    I  N+   + I+D++ +L   N
Sbjct: 406 HWIVYSPEKDEVVGLFTDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLN 465

Query: 333 RSFVELWEID-------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
              +E++ ++       + F         + + +R  + +  +LN+    E     Y   
Sbjct: 466 NKDLEIFGVENKQDVIGVNFFENPNVPQHIRDRVRDEDLVDFRLNYS--FERAEGYYHPD 523

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                  +    +        N   G I +  + T Q+D   +            D+   
Sbjct: 524 RRDTIDIYTKVSKLYDNEGNFN---GYILISIDNTEQIDAMNRIRDFENFFLLISDYAKV 580

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G A      ++ L N    ++ +  +N                R  +  D   +F     
Sbjct: 581 GYA------KLNLLNRKGYAIKQWYKNLGEEEDTPLADVVGVYRNMHPEDRERIFDFYRE 634

Query: 506 SFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER 553
                RK  QG + +           +  +V+  +  P  N  + +    ++T+    E+
Sbjct: 635 VRKGNRKHFQGEMRIYRPGKKNEWNWIRMNVVVTTYNPEENEVEIIGINYDITELKETEK 694

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++      ++ +Y++ +
Sbjct: 695 ELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDTENI---EERREYIQIV 751

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K+ E N+ +    
Sbjct: 752 KENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVKE-NVELMFDP 810

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  ++DR RL Q+ S  ++NA+ F+S+GS + +   +   +  F V++ G  I  +
Sbjct: 811 HLAECRIISDRNRLHQVISNFVNNAIKFTSEGS-IRVGYKQKGEELEFYVQDTGVGIDAE 869

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RFV         G GLGLSI +S +   GG + + S     +     +P
Sbjct: 870 SQAHIFERFVKLNSFVH--GTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923


>gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1208

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 115/602 (19%), Positives = 224/602 (37%), Gaps = 54/602 (8%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL---------- 269
            S++ +        ++ I E  + F+   +    +S +L +       TL          
Sbjct: 201 RSFEADQARGSDSGRELIDEVPEEFRPMFEVLARTSDSLRRELEAREKTLASLRALLGTI 260

Query: 270 -----EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
                  G      I  V  + GE      V++      +L H    L    + ++I D+
Sbjct: 261 LPADAPAGGAPLDDIETVTRAIGEL-----VAEREAGRRELDHQKFALDQHGI-VSITDR 314

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              + + N  F E+       L            +  ++  P +     W+         
Sbjct: 315 AGLITYANDRFCEISGYSREELLGASH------RIVKSDYHPPEFYADMWRTIRGGRVWH 368

Query: 385 SETHKDTWHLPNGQTLHVIVT--SNPR-----GGTIWMFENLTVQVDLETKYNTLVKVQG 437
            E    T    +G+   V  T    P         I +  ++T + D+E +    +    
Sbjct: 369 GEIKNRT---KSGEPFWVSATIVPLPDADGVPERFISIRTDITERKDIEARLAEQLHFTE 425

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             ++ +   + +   DGR    N AF  ++  +  +      +  +     R  ++ D  
Sbjct: 426 LLLESIPTAIYLKDADGRYLRFNRAFEEMYGIDREKWYGRRVLELVPGDEGRLMHKKDLE 485

Query: 498 DLFAAIITSFDDE---RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            L      S++     R++ Q    L   + L  +   +     +   +++TD  R E+ 
Sbjct: 486 LLQEGGHQSYEARIVNRRTGQHRDGLFWKARLTRADGTV--TGLVGAVIDITDRKRVEQE 543

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +    A + K+ F+ ++S+E+R+P+  IIG T+L   ++   L+  Q  Y+  + 
Sbjct: 544 LESARQLAEAASQAKSDFLANMSHEIRTPMNGIIGMTELALDTR---LDPTQRDYLNIVL 600

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+  LL +VNDILD + ++AG + +          + E  +SI+T+     +R      
Sbjct: 601 SSAESLLVIVNDILDFSKIEAGKLAIEEIDFNPAVAVTEALKSISTRAERKKLRFAYELS 660

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-----FIFSVKNNG 727
             L + V  D  R+ Q+ + +  NA+ F+  G   V ++A             F V + G
Sbjct: 661 PDLPAVVAGDSGRIRQVLTNLCDNALKFTKAGEIAVRVRAEPSAAGGDALIAHFEVSDTG 720

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +    +F  F        RR  G GLGL+I    + L GG + + S+    +T +
Sbjct: 721 IGIDPEQQAQIFEAFTQADTSTTRRFGGTGLGLTISARLVGLMGGRIWVDSTPGVGSTFH 780

Query: 786 CR 787
             
Sbjct: 781 FT 782


>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1610

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 126/659 (19%), Positives = 254/659 (38%), Gaps = 56/659 (8%)

Query: 172  DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD-ILWANISYKKNTETEG 230
             G+  +++E       L      F+ L + +D + W        +L+ + +++   E   
Sbjct: 659  TGMLRDISERKRMEATLRESEERFRQLAEHIDAVFWLTSPDKSEVLYVSPAFETIWEFPR 718

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALEKNFC---ETVSTLEHGNNKSYK--IVRVLNS 285
             +              E + R+ +++A + +     E       G  +  +     + N+
Sbjct: 719  DLLYVNPSFWLDHIHPEDRTRVATAAACQMHLPYDEEYRIVTPSGQVRWIRDRSFAIKNA 778

Query: 286  FGE----AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
             GE    AGI +D++    +  Q+         ++     AI + +    + F N++ V+
Sbjct: 779  QGEPYRIAGITVDITAAKQMEAQIRASELRHRALVELSPHAIFV-NCEDRIVFTNQACVK 837

Query: 338  LWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            L   I  + L        +LEF+   +    Q   +     I    +     ++ +    
Sbjct: 838  LLGAIAPSQLFGK----TVLEFIHPES----QAKVQQRIATIRETNQPVPPTEERFVGLA 889

Query: 397  GQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVF 450
            G  + V V + P           +  ++  + DLE     T +++Q       +  +   
Sbjct: 890  GAIIDVEVAATPIMFEGKPAIQVIATDIRARKDLERALLATNLQLQTILASATNVSIVAT 949

Query: 451  GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-- 508
              +G I   N     L     + +     +  +        +  +  DL+   I      
Sbjct: 950  NTEGTITTFNTGAEELLGYTSDEMIGQQSLILLHVPEEIDRHAKELSDLYERPIQGVAAL 1009

Query: 509  ---------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERA 554
                     DER+      +    +VL  +I  L ++  ++T       ++T    AE A
Sbjct: 1010 VEHANRGGFDEREWTYQRKDGSRLTVL-VTITALRDSDGVVTGFLAMGKDITSRKAAEHA 1068

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L E  +   +A ++K  F+  +S+E+R+P+  IIG T LL  +   +L  +Q ++ + + 
Sbjct: 1069 LAEARDEALRAAQVKADFLATMSHEIRTPMNAIIGMTGLLLDT---ALTKEQHEFADSVR 1125

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             SS  LL L+NDILD + ++AG +        L   + +  + +A +     + +  + D
Sbjct: 1126 RSSDGLLTLLNDILDFSKIEAGKLHFEQLPFDLRMTVEDTVELLAEQAQSKGLELIGLVD 1185

Query: 675  GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730
              + +  V D  RL QI   ++ NA+ F++ G   +       G      F++K+ G  I
Sbjct: 1186 AAVPTAVVGDPGRLRQILVNLVGNAIKFTAAGEVFLHVTRETQGGLDLLRFTIKDTGIGI 1245

Query: 731  PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            PE +   +F+ FV       RR  G GLGL+I +  ++   G + + S     +T    
Sbjct: 1246 PEAVQGRLFHAFVQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVESHSGQGSTFWFT 1304



 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 80/564 (14%), Positives = 166/564 (29%), Gaps = 75/564 (13%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLT--------ENNCLTIVWDGKDETPEII 96
           I  R +L          L      L +  +           E       W   DE   I 
Sbjct: 402 ISDRKALEAAQARAQCDLHAKQQALDEAQTQAHLGSWHWNIETGQE--AWS--DEQCRIF 457

Query: 97  GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF--DLVAETQNDCAIK 154
           G         Q+     +F + L      ++ +A +        +  D      +     
Sbjct: 458 GHTPD-----QSLPTYATFLSALHPDDVERVKQAVDGALTYDSPYNVDCRIRRPDGEVRH 512

Query: 155 IEGR-VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           I  R V       R +S+ G   ++ +         +  +  + +F+S    +   D+ G
Sbjct: 513 INCRGVVQRDPDGRPVSMAGTVLDITDYKRTEFAWRDSETRMRSIFESAIEGIVVIDERG 572

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR----------MISSSALEKNFC 263
            I  AN +        G    + IG++  L      +                 +  +  
Sbjct: 573 RIESANTA---LLNLLGYQAHELIGQNISLLMPSPYREHHDEYLANYLATGKRTIIGSGR 629

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
           +  +  + G      +       G      G+  D+S+   +   L  + E    L   I
Sbjct: 630 DVPAVRKDGTQIDLHVSVSEMQIGTEKKYTGMLRDISERKRMEATLRESEERFRQLAEHI 689

Query: 320 -AIF-----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            A+F     D++  L + + +F  +WE     L  NPS    L+ +   ++         
Sbjct: 690 DAVFWLTSPDKSEVL-YVSPAFETIWEFPRDLLYVNPSF--WLDHIHPEDRT-------- 738

Query: 374 WKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTS----NPRG---GTIWMFENLTVQVD 424
            +    +  +    + + + +  P+GQ   +   S    N +G       +  ++T    
Sbjct: 739 -RVATAAACQMHLPYDEEYRIVTPSGQVRWIRDRSFAIKNAQGEPYRIAGITVDITAAKQ 797

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           +E +           ++     + V   + RI  +N A   L          G  +    
Sbjct: 798 MEAQIRASELRHRALVELSPHAIFV-NCEDRIVFTNQACVKLLGAIAPSQLFGKTVLEFI 856

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-----NAQTM 539
              S+   +        A I   +      +     L+ ++++  +   P          
Sbjct: 857 HPESQAKVQQRI-----ATIRETNQPVPPTEERFVGLAGAIIDVEVAATPIMFEGKPAIQ 911

Query: 540 LTFVNVTDSVRAERALTEKNEALR 563
           +   ++      ERAL   N  L+
Sbjct: 912 VIATDIRARKDLERALLATNLQLQ 935



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 85/650 (13%), Positives = 187/650 (28%), Gaps = 96/650 (14%)

Query: 6   ATIGIGKGIEICTLFSC-----------------KIAVFGTIAGMLLTTIIPIILLIRQR 48
           + +G G  +    LFS                   +A+   IA     T        +  
Sbjct: 188 SVLGFGAPLPDGELFSIILFSKDFIPESTATLFKPLALCAQIALAPYATTTAASHPHQTS 247

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL---------TIV---------WDGKD 90
                  + T    + +  +++    LL  +             IV         W+   
Sbjct: 248 RPEQAGDDPTPVHNAHLQARIADLERLLAVHEQTVDEQADRMDLIVQGSQMGTWDWEIPT 307

Query: 91  ETPEIIGQLHQRID--IPQTDTDLLSFENWLKFHHYIK-LSKATEKLRKEGQSF----DL 143
                  +    +   + + +  + ++E  +      + ++  +  LR +  ++     L
Sbjct: 308 GRVTFNERWASTLGYRLDELEPHVRTWEQLVHPDDLQQVMATVSAHLRGDTPTYSSEHRL 367

Query: 144 VAETQNDCAIKIEGRVS---GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
             ++   C +   GRV       A LR   +    S+         +    +   +   D
Sbjct: 368 RRKSGAWCWVFDSGRVVKRDAKGAPLRAAGIHLDISDRKALEAAQARAQCDLHAKQQALD 427

Query: 201 SLDFLV----WHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK---RM 252
                     WH + + G   W++   +    T              L  +++++    +
Sbjct: 428 EAQTQAHLGSWHWNIETGQEAWSDEQCRIFGHTPDQSLPTYATFLSALHPDDVERVKQAV 487

Query: 253 ISSSALEKNF-CETVSTLEHGNNKSYKIVRVLN------SFGEAGIAIDVSKEITV---- 301
             +   +  +  +       G  +      V+           AG  +D++         
Sbjct: 488 DGALTYDSPYNVDCRIRRPDGEVRHINCRGVVQRDPDGRPVSMAGTVLDITDYKRTEFAW 547

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            D  T    I  +    I + D+   ++  N + + L       L     +  +    R 
Sbjct: 548 RDSETRMRSIFESAIEGIVVIDERGRIESANTALLNLLGYQAHELIGQNISLLMPSPYRE 607

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT--LHVIVTSNPRGG---TIWMF 416
            +         T K  I    +     +      +G    LHV V+    G       M 
Sbjct: 608 HHDEYLANYLATGKRTIIGSGRDVPAVR-----KDGTQIDLHVSVSEMQIGTEKKYTGML 662

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLS 475
            +++ +  +E       +   +  +H+     +  PD   +   +PAF ++W+   + L 
Sbjct: 663 RDISERKRMEATLRESEERFRQLAEHIDAVFWLTSPDKSEVLYVSPAFETIWEFPRDLLY 722

Query: 476 -----PGTHIR-------NIAATCSRY--YNESDGWDLFAAIITSFDDE---RKSLQGTL 518
                   HI          AA C  +  Y+E       +  +    D     K+ QG  
Sbjct: 723 VNPSFWLDHIHPEDRTRVATAAACQMHLPYDEEYRIVTPSGQVRWIRDRSFAIKNAQGEP 782

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             ++   ++ +      AQ   + +      RA   L+     +   D I
Sbjct: 783 YRIAGITVDITAAKQMEAQIRASEL----RHRALVELSPHAIFVNCEDRI 828


>gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 732

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 176/375 (46%), Gaps = 7/375 (1%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVF--GPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           +D   + N  ++     ID+    V  +   P   ++L +     L  + E   S     
Sbjct: 356 LDALEESNASIQEMKTVIDNSPAIVFKWKATPGWPVELVSDNISLLGYSPEEFSSGHLWY 415

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQT 538
            +I         +++     A     F  E + +   G ++ + +  L            
Sbjct: 416 GDIVHPDDLDRVQNNLDKQMAEGQNDFTQEYRIITKSGEIKWVDERTLIKRDAKGKIKYL 475

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +++T+   AE+A+ E       A++ K+ F+ ++S+ELR+PL +IIGF+D+L    
Sbjct: 476 QGIILDITEKKEAEKAIIEAKGMAEAANQTKSQFLANMSHELRTPLNSIIGFSDVLLEEA 535

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G LN KQ +Y   I+ S   LL+++NDILDL+ ++AG M+LN     L ++++E+K ++
Sbjct: 536 FGKLNEKQKKYTHNINTSGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNTL 595

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              + +  + + + +  +     AD+ ++ Q+   +LSNA+ F+ +   + +       +
Sbjct: 596 EPLVKKKQLILDLDTSLEYP-VYADKLKIKQVLYNLLSNAIKFTPEKGKIAIDIDCGEEE 654

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV ++G  IP +    +F  F    +    Q +G GLGL++V++ I +HGG + + S
Sbjct: 655 ITISVSDSGIGIPPEEQDKLFQPFRQIDSDSNRQYQGTGLGLALVKNIIEMHGGQIWVES 714

Query: 777 SDEGVTTINCRIPSK 791
                +T    +P +
Sbjct: 715 EAGKGSTFKFTLPLQ 729


>gi|332559833|ref|ZP_08414155.1| histidine kinase [Rhodobacter sphaeroides WS8N]
 gi|332277545|gb|EGJ22860.1| histidine kinase [Rhodobacter sphaeroides WS8N]
          Length = 849

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 194/495 (39%), Gaps = 30/495 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
              ++ +  +    A+FD  + L   N ++      +   +    +  +LL+   +   +
Sbjct: 86  RRLWDSIDAIEDGFAVFDAGQRLVAANEAYR--CHFEGLEVRPGMALADLLQLATTHGLI 143

Query: 366 ---PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
               E  +   W++ +   +       +      GQ L ++      G  + +  ++T Q
Sbjct: 144 DLRGEPAD--LWQQRMIRRWDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQ 201

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + L              ID + +G  +F    R+ L N  +R+++      L PG     
Sbjct: 202 MRL-----------RAAIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEE 250

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTML 540
           I      +    +        +       + L G  E  L     L       P+   + 
Sbjct: 251 ILRHGLAHGQFPEAAGREEEWLADRLAAFRHLGGAAEQQLDDGRWLRVIEHETPDGGRVG 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V++T+  R + AL     A   A   K++F+ ++S+E+R+P+  I+G  DLL  +   
Sbjct: 311 LGVDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETV-- 368

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  + E I +S   LL ++NDILD + ++A  + L+     L   ++EV   +  
Sbjct: 369 -LTEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQP 427

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARD 715
           K     I + +  D  L + FV D  RL Q+ + ++ NA+ F++ G      V L+ A  
Sbjct: 428 KARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPG 487

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             D   +V++ G  I  +    VF  F         +  G GLGL+I    I L  G V 
Sbjct: 488 RHDLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVW 547

Query: 774 ISSSDEGVTTINCRI 788
           + S     +    R+
Sbjct: 548 VESEPGRGSCFGFRL 562



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 102/326 (31%), Gaps = 22/326 (6%)

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD 172
           L+ E   +      L     +L    +   + A   +D  I+   R     A      L 
Sbjct: 7   LAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQ--RAVVKTALSEAEKLK 64

Query: 173 GIYSE-LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           G  S  L+E                   D+++      D    ++ AN +Y+ + E   +
Sbjct: 65  GQNSRFLSELERAHTAAVMAERRLWDSIDAIEDGFAVFDAGQRLVAANEAYRCHFEGLEV 124

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG---------NNKSYKIV-R 281
               A+ +  +L        +    A            E             +  ++V R
Sbjct: 125 RPGMALADLLQLATTHGLIDLRGEPADLWQQRMIRRWDEDPVEPEIVRRCTGQWLRLVNR 184

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                    + ID+++++ +          +  +     +FD+   L   N  +  ++  
Sbjct: 185 RARDGDMVSLLIDITEQMRLRAA-------IDAIPDGFVLFDRAERLVLCNDRYRAIYPR 237

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTL 400
               L      +E+L    +  + PE     + W  +  + ++      +   L +G+ L
Sbjct: 238 SAEALRPGAPFEEILRHGLAHGQFPEAAGREEEWLADRLAAFRHLGGAAEQ-QLDDGRWL 296

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE 426
            VI    P GG + +  ++T     +
Sbjct: 297 RVIEHETPDGGRVGLGVDITELKRQQ 322


>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
 gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
          Length = 1618

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 121/672 (18%), Positives = 238/672 (35%), Gaps = 82/672 (12%)

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
             +        E   + + L+  +     +FD+    +      G I   N ++ +     
Sbjct: 460  DVTERMRAQKELQRRERLLNELLEQQTAIFDNAP-PILLV-CDGRIRQFNPAFVEL---- 513

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSFG 287
                    G + +L   +I      +S+ E+        L  G    +   + R+  S  
Sbjct: 514  ------MRGTATELLGRDIAVLFNGASSSERFTARVAPRLAQGQALREEATLCRLDGSSY 567

Query: 288  EAGIA-----------------IDVSKEITVNDQLTHTYEILHNLTVA--IAIFDQN--- 325
             A +A                  D+++       +    E L     A  + +FD N   
Sbjct: 568  AARLAGRGLKMEGCLTASIWVIEDITEARQAEVAMREAAERLEIAQEAGKVGVFDVNLES 627

Query: 326  RYLQFHNRSFVELWEIDL--------AFLATNPSNDELLEFLR----SANKLPEQLNWKT 373
                  +   V +  +          A+LA    +D   +  R                +
Sbjct: 628  GR-VLWSDKLVAMMGLPPGDQPRGKDAWLACLHPDDR--DRARTHFDECLAGTATTARAS 684

Query: 374  WK-----ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            W+       +    +++   ++     +G+ + V+           ++ ++  Q  LE +
Sbjct: 685  WRIVRPGGEVRWFLEAARIFRN----ADGKAVRVVG----------VYVDIHDQKQLEAQ 730

Query: 429  YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT--HIRNIAAT 486
                +  Q   ID +   +      GR    N A+   +      L   T   ++ +A  
Sbjct: 731  VAEQLDFQQALIDAIPVPLFYKDAQGRYIGFNAAYEQAFGVRREDLIGKTVLDLQFLAQA 790

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                ++   G  +        + +     G +      +  +S         + TFV++T
Sbjct: 791  ERERFDSDTGAAVAGEQAVHREVDLPYADGAMHHTLFWLHGFSRADGSPGGAIGTFVDIT 850

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            D  +AE+ L    E   +   +K++F+ ++S+E+R+P+  IIG + L   S    LN +Q
Sbjct: 851  DRQKAEQDLRLAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKS---GLNPRQ 907

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              YV  I  +   LL ++NDILD + ++AG + +     VL+ +L  V   +  K     
Sbjct: 908  HDYVSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVGYKAGAKG 967

Query: 667  IRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIF 721
            + +          + V D  RL QI     +NA+ F+ +G   + ++    +       F
Sbjct: 968  LELVCDVAADVPPNLVGDSLRLGQILINFSNNAIKFTERGEISIAVRVQEQDAQRVRLRF 1027

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
             V++ G  +  +    +F  F        RR  G GLGL+I +S   L GG V + S   
Sbjct: 1028 EVRDTGIGLTPEQMGRLFESFQQADASTTRRYGGTGLGLAICKSLAELMGGEVGVDSEYG 1087

Query: 780  GVTTINCRIPSK 791
              +T    +P +
Sbjct: 1088 KGSTFWVSLPLE 1099



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 62/425 (14%), Positives = 134/425 (31%), Gaps = 41/425 (9%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            G  AF+ +  L  +  +L  +  +         V     +S    V   D  G I W N
Sbjct: 317 VGGVAFVVLSLLGLLVLDLLLSRRRVAAARERFHVLGAALESSPVAVVITDADGLIDWVN 376

Query: 220 ISYKKNTETEGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCET-VSTLEHGN 273
             Y++NT   G   ++  G+   L       +   ++M S+    +++    V+    G+
Sbjct: 377 PQYERNT---GYPLKEVRGKKPSLVSSGQTPQRTYQQMWSTLLSGQSWQGQFVNQRRDGS 433

Query: 274 NKSYKIV------RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN-LTVAIAIFDQ-- 324
               +        +     G  G+  DV++ +    +L     +L+  L    AIFD   
Sbjct: 434 IYYDEATLSPVFDKAGKRIGMVGLHEDVTERMRAQKELQRRERLLNELLEQQTAIFDNAP 493

Query: 325 ------NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
                 +  ++  N +FVEL       L        L     S+ +   ++  +  +   
Sbjct: 494 PILLVCDGRIRQFNPAFVELMRGTATELLGR-DIAVLFNGASSSERFTARVAPRLAQGQA 552

Query: 379 FSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRGG----TIWMFENLTVQVDLETKYNTL 432
                     + T    +G +    +        G    +IW+ E++T     E      
Sbjct: 553 LR-------EEATLCRLDGSSYAARLAGRGLKMEGCLTASIWVIEDITEARQAEVAMREA 605

Query: 433 VKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            +      +    GV     + GR+  S+     +     ++               R  
Sbjct: 606 AERLEIAQEAGKVGVFDVNLESGRVLWSDKLVAMMGLPPGDQPRGKDAWLACLHPDDRDR 665

Query: 492 NESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             +   +  A   T+     + ++  G +    ++   +        + +  +V++ D  
Sbjct: 666 ARTHFDECLAGTATTARASWRIVRPGGEVRWFLEAARIFRNADGKAVRVVGVYVDIHDQK 725

Query: 550 RAERA 554
           + E  
Sbjct: 726 QLEAQ 730


>gi|126460803|ref|YP_001041917.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102467|gb|ABN75145.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
          Length = 849

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 194/495 (39%), Gaps = 30/495 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
              ++ +  +    A+FD  + L   N ++      +   +    +  +LL+   +   +
Sbjct: 86  RRLWDSIDAIEDGFAVFDAGQRLVAANEAYR--CHFEGLEVRPGMALADLLQLATTHGLI 143

Query: 366 ---PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
               E  +   W++ +   +       +      GQ L ++      G  + +  ++T Q
Sbjct: 144 DLRGEPAD--LWQQRMIRRWDEDPVEPEIVRRCTGQWLRLVNRRARDGDMVSLLIDITEQ 201

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + L              ID + +G  +F    R+ L N  +R+++      L PG     
Sbjct: 202 MRL-----------RAAIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEE 250

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTML 540
           I      +    +        +       + L G  E  L     L       P+   + 
Sbjct: 251 ILRHGLAHGQFPEALGREEEWLADRLAAFRHLGGAAEQQLDDGRWLRVIEHETPDGGRVG 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V++T+  R + AL     A   A   K++F+ ++S+E+R+P+  I+G  DLL  +   
Sbjct: 311 LGVDITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETV-- 368

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  + E I +S   LL ++NDILD + ++A  + L+     L   ++EV   +  
Sbjct: 369 -LTEDQRLFSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQP 427

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARD 715
           K     I + +  D  L + FV D  RL Q+ + ++ NA+ F++ G      V L+ A  
Sbjct: 428 KARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPG 487

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             D   +V++ G  I  +    VF  F         +  G GLGL+I    I L  G V 
Sbjct: 488 RHDLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVW 547

Query: 774 ISSSDEGVTTINCRI 788
           + S     +    R+
Sbjct: 548 VESEPGRGSCFGFRL 562



 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 103/326 (31%), Gaps = 22/326 (6%)

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD 172
           L+ E   +      L     +L    +   + A   +D  I+   R     A      L 
Sbjct: 7   LAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQ--RAVVKTALSEAEKLK 64

Query: 173 GIYSE-LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           G  S  L+E                   D+++      D    ++ AN +Y+ + E   +
Sbjct: 65  GQNSRFLSELERAHTAAVMAERRLWDSIDAIEDGFAVFDAGQRLVAANEAYRCHFEGLEV 124

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG---------NNKSYKIV-R 281
               A+ +  +L        +    A            E             +  ++V R
Sbjct: 125 RPGMALADLLQLATTHGLIDLRGEPADLWQQRMIRRWDEDPVEPEIVRRCTGQWLRLVNR 184

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                    + ID+++++ +          +  +     +FD+   L   N  +  ++  
Sbjct: 185 RARDGDMVSLLIDITEQMRLRAA-------IDAIPDGFVLFDRAERLVLCNDRYRAIYPR 237

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTL 400
               L      +E+L    +  + PE L   + W  +  + ++      +   L +G+ L
Sbjct: 238 SAEALRPGAPFEEILRHGLAHGQFPEALGREEEWLADRLAAFRHLGGAAEQ-QLDDGRWL 296

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE 426
            VI    P GG + +  ++T     +
Sbjct: 297 RVIEHETPDGGRVGLGVDITELKRQQ 322


>gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1066

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 121/636 (19%), Positives = 235/636 (36%), Gaps = 62/636 (9%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF-------QKAIGESRKLFKEE 247
           +++L ++   ++   D+     + N + +  T      F            +S K+    
Sbjct: 298 YRLLVENSPDIICRFDRKLLCTYINPAVEAMTGAPADTFIGDYLQFPSFEEDSGKILAAA 357

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNN-KSYKIVRVLNSFGEA-GIAIDVSKEITVNDQL 305
           ++      +                   +               GI  D++      +Q 
Sbjct: 358 VRGAFDKKAEQSAEVVFRTPLGLKLCQCRLIPERDADGRVTSVLGILRDIT---QAREQE 414

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +     V +   D +      N  F E+   D   L            +  A+ +
Sbjct: 415 ERYRVVFEQAAVGLNRIDLDGRFTEANGKFCEITGYDRHELIGRS-----FTHVVHADDI 469

Query: 366 PEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRG---GTIWMFE 417
            E ++ +++        + +    +      +G T+ V VT     N  G   GTI + E
Sbjct: 470 SENIDLFRSLMAGKIDEFAA----EKQVVRKDGTTVWVNVTISLERNALGRLVGTIGVME 525

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +   E +     +      ++  + +   G D +    NPA   L     +    G
Sbjct: 526 DITARKRTEQELYRREQEFRALSENSPDIIVRIGKDLKRSYVNPAIGRLHGMSPDH-YLG 584

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIP--LP 534
            H+R  A      +  +   +L   ++ S  +E  S + +L  ++        + P   P
Sbjct: 585 MHVREPARPDREEFRRA-YEELLKQVLASGREE--SHEYSLTTINGLRHFHCRLTPEFAP 641

Query: 535 NAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           + + +       +VT     E+ L         A+  K+ F+  +S+E+R+P+  IIG T
Sbjct: 642 SGEVVSVLSISRDVTAYKELEQELRRARNEAEVANHAKSEFLAAMSHEIRTPMNGIIGMT 701

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DL     +G  +SK S Y+ +I  S+  LL L+NDILDL+ V++G M+L      L   L
Sbjct: 702 DLAL---MGGCDSKASSYLGFIKESAHSLLELINDILDLSKVESGRMELEKKAFDLRKSL 758

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             + Q +        + +      ++    + D  RL Q+F+ ++ NA+ F+S GS + +
Sbjct: 759 ESLLQPLRLSAQRKGVELSWYVGPEVPELLMGDDLRLRQVFTNLVGNALKFTSWGS-ITI 817

Query: 711 K----------------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
                            A+++      +V + G  IP D  + VF  F +  H  +  G 
Sbjct: 818 AIGVAEAADSRKTPEPGASQEEISLQATVSDTGIGIPPDKLQHVFESFATLGHDKEYGGT 877

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTT--INCRI 788
           GLGL+I +  + + GG +   S     +      R+
Sbjct: 878 GLGLAITKKLVEIMGGTIWAESQPGQGSVFGFTVRL 913


>gi|298384963|ref|ZP_06994522.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262107|gb|EFI04972.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 931

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 122/656 (18%), Positives = 254/656 (38%), Gaps = 53/656 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDI-----LW 217
              SL  I S   E      ++    S    LF  +      +   RD+ G +       
Sbjct: 288 WFSSLANIISICIELRKAKDRVVREQSFLSNLFHFMPLGYIRMSVVRDENGQLLDYKITD 347

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN-FCETVSTLEHGNNKS 276
            N +  +        +   +    +++ +   + +     L+ N + E           +
Sbjct: 348 VNKACSRFFARPAETYIGVLAS--EIYPDFSSQLLFLKEVLDNNSYREKDIFFSQTELYT 405

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
           + IV         G+  D ++ +  N  L  + +    I  N+   + I+D++ +L   N
Sbjct: 406 HWIVYSPEKDEVVGLFTDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLN 465

Query: 333 RSFVELWEID-------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
              +E++ ++       + F         + + +R  + +  +LN+    E     Y   
Sbjct: 466 NKDLEIFGVENKQDVIGVNFFENPNVPQHIRDRVRDEDLVDFRLNYS--FERAEGYYHPD 523

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                  +    +        N   G I +  + T Q+D   +            D+   
Sbjct: 524 RRDTIDIYTKVSKLYDNEGNFN---GYILISIDNTEQIDAMNRIRDFENFFLLISDYAKV 580

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G A      ++ L N    ++ +  +N                R  +  D   +F     
Sbjct: 581 GYA------KLNLLNRKGYAIKQWYKNLGEEEDTPLADVVGVYRNMHPEDRERIFDFYRE 634

Query: 506 SFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER 553
                RK  QG + +           +  +V+  +  P  N  + +    ++T+    E+
Sbjct: 635 VRKGNRKHFQGEMRICRPGKKNEWNWIRMNVVVTTYNPEENEVEIIGINYDITELKETEK 694

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++      ++ +Y++ +
Sbjct: 695 ELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDTENI---EERREYIQIV 751

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K+ E N+ +    
Sbjct: 752 KENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVKE-NVELMFDP 810

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  ++DR RL Q+ S  ++NA+ F+S+GS + +   +   +  F V++ G  I  +
Sbjct: 811 HLAECRIISDRNRLHQVISNFVNNAIKFTSEGS-IRVGYKQKGEELEFYVQDTGVGIDAE 869

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RFV         G GLGLSI +S +   GG + + S     +     +P
Sbjct: 870 SQAHIFERFVKLNSFVH--GTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923


>gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
 gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
          Length = 1272

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 126/674 (18%), Positives = 258/674 (38%), Gaps = 86/674 (12%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ--AGDILWANISYKKNTETEGIVFQK 235
            +       + LS     ++ + ++L   V+  D      +   N   ++ T   G+  QK
Sbjct: 368  ITHRKRTERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYMERIT---GVPRQK 424

Query: 236  AIG-ESRKLFKEEIKKRMI--------SSSALEKNFCETVSTLEHGNNKSYKIVR--VLN 284
            A+G    +LF   + + +                     V       ++  K+ +  VL 
Sbjct: 425  ALGVPETRLFPPPLSEELEVLNRKILEDPLTRVLVPSMEVEFPHQEESRIVKVQKRGVLT 484

Query: 285  SFGEA----GIAIDVSKEITVNDQLTHTYEILH-----------------------NLTV 317
              GE      +  D++++    ++L      L                          +V
Sbjct: 485  PEGELDHILVLLEDITEQRRTEEELERYRNHLEEEVARKSAELARAAMEMDAILRSTESV 544

Query: 318  AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            AI   D++  +Q  N +   L  +   +    P  +     L     +  Q+     +  
Sbjct: 545  AICSMDRDLRIQIFNPTLARLSRM---YFKRPPRREMRFTDLFPTRTMQRQVETAVSRVL 601

Query: 378  IFSVYKSSETHKDTWHLPNGQTLHVIVTS-NPRGGTIW----MFENLTVQVDLETKYNTL 432
                + +  +      LP    L V+++     GG I     +  ++T +  +E +    
Sbjct: 602  SGQTFTTRFSVSRRNLLP--LHLEVVISPKRNEGGEILGATVIAMDITQRATVERQ---- 655

Query: 433  VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +++     D    G  +   +  I  +NP    +          G  +  +       ++
Sbjct: 656  MRLFKAIADTAPYGTVIIDANHTIVYANPYMARI---------HGYRLEEVMGQHLSIFH 706

Query: 493  ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY----SIIPLPNAQTMLTFV----- 543
              + ++     +T  +D        +  +    L +    +   + + +  +T++     
Sbjct: 707  TEEQYEKLIEELTRAEDVGVMPSQEIWHVYQGQLPFPMLTTATFIKDEEGHVTYIGIVSL 766

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +++    AE+ L E  E   +A   K+ F+ ++S+E+R+PL  IIGFTDLL +S     +
Sbjct: 767  DMSLQKEAEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASSF---PS 823

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             K++ Y++ I +S   LL L+NDILDL+ ++AG M L+YS + L   + E+     T++ 
Sbjct: 824  GKEASYLDAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVE 883

Query: 664  ENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNG 717
               +   +  +     +   D  RL Q+   ++ NA+ F+ +G   +     L       
Sbjct: 884  HKGLSFILDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGSLHTEESKV 943

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            D   SV++ G  I  +  +++F  F  ++     +  G GLGL+I +  + + GG +S+ 
Sbjct: 944  DLTISVEDTGIGIRPEEREAIFQSFHQSSGQDTRKYGGTGLGLTISKRLVEMMGGTISVE 1003

Query: 776  SSDEGVTTINCRIP 789
            S     TT    IP
Sbjct: 1004 SEYGKGTTFTVNIP 1017



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 116/351 (33%), Gaps = 44/351 (12%)

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSKE----ITVNDQLTHTYE 310
           +A    F    S    G   S+ ++ +          + DV  E     ++ +Q      
Sbjct: 202 AAPHDTFHGRFSFPGRG-RTSFLVIPLPVQGRILPFLLLDVHAETLYFESLQEQRRLFTS 260

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVE----LWEIDLAFLATNP---SNDELLEFLRSAN 363
           +L + T  I + D +R + + N +F      L    L  L   P    +  +   LR   
Sbjct: 261 VLDSFTDYILVTDSDRRILYANTAFETWAYLLEGRPLPSLVGKPISLVSRAIDAHLRPLL 320

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           +  E+ +    +E I   +++ E   +    P  +              + +  N+T + 
Sbjct: 321 EEAEKSDTVILRE-ISWQHRAEEITTEVTIFPLHKDYETAR-------WLIILHNITHRK 372

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLW--------KTEENR 473
             E   +   +   + ++ L  GV    P  D  + L NP    +            E R
Sbjct: 373 RTERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYMERITGVPRQKALGVPETR 432

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS----LQGTLELLSDSVLEYS 529
           L P      +     +   +     L  ++   F  + +S    +Q    L  +  L++ 
Sbjct: 433 LFPPPLSEELEVLNRKILEDPLTRVLVPSMEVEFPHQEESRIVKVQKRGVLTPEGELDHI 492

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           ++ L +         +T+  R E  L      L +    K++ +   + E+
Sbjct: 493 LVLLED---------ITEQRRTEEELERYRNHLEEEVARKSAELARAAMEM 534



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/395 (12%), Positives = 112/395 (28%), Gaps = 57/395 (14%)

Query: 119 LKFHHYIKLSKATEKLRKEGQS-FDLVAETQND---CAIKIEGRVSGSCAFLRILSLDGI 174
           ++      L +            F      +       + ++GR+           L  +
Sbjct: 189 VEPDARKSLEEFLAAPHDTFHGRFSFPGRGRTSFLVIPLPVQGRIL-------PFLLLDV 241

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-NTETEGIVF 233
           ++E    TL  + L     +F  + DS    +   D    IL+AN +++      EG   
Sbjct: 242 HAE----TLYFESLQEQRRLFTSVLDSFTDYILVTDSDRRILYANTAFETWAYLLEGRPL 297

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--------- 284
              +G+   L    I   +       +     +       +++ +I   +          
Sbjct: 298 PSLVGKPISLVSRAIDAHLRPLLEEAEKSDTVILREISWQHRAEEITTEVTIFPLHKDYE 357

Query: 285 SFGEAGIAIDVSKEITVND----QLTHTYEILHNLTVAIAIFDQ--NRYLQFHNRSFVEL 338
           +     I  +++           Q     ++L  L + +   D   +  +   N     +
Sbjct: 358 TARWLIILHNITHRKRTERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYMERI 417

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY----KSSETHKDTWHL 394
             +        P        L       E LN K  ++ +  V     +    H++   +
Sbjct: 418 TGVPRQKALGVPETRLFPPPLSEEL---EVLNRKILEDPLTRVLVPSMEVEFPHQEESRI 474

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY------------NTLVKVQGETID- 441
              Q   V+         + + E++T Q   E +                 ++    ++ 
Sbjct: 475 VKVQKRGVLTPEGELDHILVLLEDITEQRRTEEELERYRNHLEEEVARKSAELARAAMEM 534

Query: 442 ------HLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
                   S  +     D RI++ NP    L +  
Sbjct: 535 DAILRSTESVAICSMDRDLRIQIFNPTLARLSRMY 569


>gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341374|gb|AAO79162.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 921

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 122/656 (18%), Positives = 254/656 (38%), Gaps = 53/656 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDI-----LW 217
              SL  I S   E      ++    S    LF  +      +   RD+ G +       
Sbjct: 278 WFSSLANIISICIELRKAKDRVVREQSFLSNLFHFMPLGYIRMSVVRDENGQLLDYKITD 337

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN-FCETVSTLEHGNNKS 276
            N +  +        +   +    +++ +   + +     L+ N + E           +
Sbjct: 338 VNKACSRFFARPAETYIGVLAS--EIYPDFSSQLLFLKEVLDNNSYREKDIFFPQTELYT 395

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
           + IV         G+  D ++ +  N  L  + +    I  N+   + I+D++ +L   N
Sbjct: 396 HWIVYSPEKDEVVGLFTDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLN 455

Query: 333 RSFVELWEID-------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
              +E++ ++       + F         + + +R  + +  +LN+    E     Y   
Sbjct: 456 NKDLEIFGVENKQDVIGVNFFENPNVPQHIRDRVRDEDLVDFRLNYS--FERAEGYYHPD 513

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                  +    +        N   G I +  + T Q+D   +            D+   
Sbjct: 514 RRDTIDIYTKVSKLYDNEGNFN---GYILISIDNTEQIDAMNRIRDFENFFLLISDYAKV 570

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G A      ++ L N    ++ +  +N                R  +  D   +F     
Sbjct: 571 GYA------KLNLLNRKGYAIKQWYKNLGEEEDTPLADVVGVYRNMHPEDRERIFDFYRE 624

Query: 506 SFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER 553
                RK  QG + +           +  +V+  +  P  N  + +    ++T+    E+
Sbjct: 625 VRKGNRKHFQGEMRIYRPGKKNEWNWIRMNVVVTTYNPEENEVEIIGINYDITELKETEK 684

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++      ++ +Y++ +
Sbjct: 685 ELILARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVDTENI---EERREYIQIV 741

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K+ E N+ +    
Sbjct: 742 KENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVKE-NVELMFDP 800

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  ++DR RL Q+ S  ++NA+ F+S+GS + +   +   +  F V++ G  I  +
Sbjct: 801 HLAECRIISDRNRLHQVISNFVNNAIKFTSEGS-IRVGYKQKGEELEFYVQDTGVGIDAE 859

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RFV         G GLGLSI +S +   GG + + S     +     +P
Sbjct: 860 SQAHIFERFVKLNSFVH--GTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 913


>gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1210

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 123/740 (16%), Positives = 255/740 (34%), Gaps = 127/740 (17%)

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           R++GQ F L+    +  A+         C            + +       + L      
Sbjct: 270 REDGQQFHLLL---SGRALLNSKNQIQGCVV--------TLTNITARKQSEQALQESQER 318

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT-------ETEGIVFQKAIGESRKLFKEE 247
           F+         +    + G++L  N ++ + T        T     QKA G  + L +E 
Sbjct: 319 FRRAVLYSPIPIMLHAEDGEVLQINQAWTELTGYTHQDIPTIADWTQKAYGTRQGLVQEN 378

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG------IAIDVS----- 296
           I +       + +     ++   +G+ + +            G       A+DV+     
Sbjct: 379 IDQLYHLDQPIGEGEYTIITR--NGSTRIWDFSSAPLGKLSDGRRMVISTALDVTLRKQA 436

Query: 297 -------------------------------KEITVNDQLTHTYEILHNLTVAIAIFDQN 325
                                           E  +         IL   +  I   D N
Sbjct: 437 ELELQQANATLEVRVEERTKALQQELQTRHQAEQELRASQARFAGILEIASDGIISVDAN 496

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK-LPEQLNWKTWKENIFSVYKS 384
           + +   N+   +++   ++ +   P     L+ L      +    + KT+  +     + 
Sbjct: 497 QRIILFNQGAEKMFGYRVSEVLGQP-----LDLLLPNRYTIAHHQHIKTFSHSQGKARRM 551

Query: 385 SETHKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            E         +G       + +      +       +++T +   E K           
Sbjct: 552 GERQAIFGRRKDGTEFPAEASISKLTLGDQVVFTAFVQDITERKQFEEKLQQSETRLKTI 611

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I    +G+ +    G++  +NPA   L+    + L        +  T      +S G   
Sbjct: 612 ITATCDGIMIVDRQGQVCFANPAAAQLFDMTPDALLNYQWGMPLGETTEIELMQSSGIGR 671

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A +  +                       I     +  ++   ++T   +A+ +L +  
Sbjct: 672 TAEMKATP----------------------IQWFSKSAYVIALRDITKRKQADLSLQQAK 709

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                A++ K+ F+ ++S+ELR+PL  I+GFT ++      ++  ++ + ++ I+ S   
Sbjct: 710 ADAEAANQAKSMFLANMSHELRTPLNIILGFTQVMSRDP--AITPEEQENLDIINKSGNH 767

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+ND+LDL+ ++AG + +  S   L  L+  +++    K     +++ +     +  
Sbjct: 768 LLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQEMFQHKARAKGLQLHLNIAADVPH 827

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-------------------- 717
           ++ AD  +L Q+   +LSNA+ F+  GS  + +   +  G                    
Sbjct: 828 YIQADSNKLRQVLINLLSNAIKFTQNGSINLRVALLKAEGNDHGSDAEDMITPPSSQTRH 887

Query: 718 -------DFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHG 769
                     F V + G  I      S+F+ F+   A +    G GLGL+I   F+ L G
Sbjct: 888 GTSLQASHLHFEVSDTGVGIAPTELGSIFDAFIQTHAGKVANEGTGLGLAISRKFVQLMG 947

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + +SS     +T +  IP
Sbjct: 948 GDIQVSSQLNQGSTFSFEIP 967



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/470 (12%), Positives = 143/470 (30%), Gaps = 48/470 (10%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L +    +++  + +          G +L+ N    +  +      +  IG + K +   
Sbjct: 51  LQSADEPYRLFVEQMQEGAATVTSDGMLLYCNR---RLADLLQRNLETVIGSNFKQYLNP 107

Query: 248 IKKRMISS--SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI------DVSK-- 297
           ++     S     +  +      L   +     +   ++     G+ +      D+++  
Sbjct: 108 VEVPFFQSLLQKDKAGYSHREFYLIASDQTEIPVELSVSPLMMEGVKVNCLIVTDLTENK 167

Query: 298 -EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE---IDLAFLATNPSND 353
            +  +         I   +  AI + DQ   +   + +  EL     I   F    P   
Sbjct: 168 RQKKIVAAEKLARSIFEQVADAIVVCDQRGTIIRTSMATQELCGQNPILQPFDQIFPLMF 227

Query: 354 ELLEFLRSANKL--PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----- 406
                    + +  P   +   +        +  +  +  +   +GQ  H++++      
Sbjct: 228 SSSTIREDNHTISSPSPTSGHPFSIATILNGEIFQGIEVVFGREDGQQFHLLLSGRALLN 287

Query: 407 --NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             N   G +    N+T +   E       +     + +    + +   DG +   N A+ 
Sbjct: 288 SKNQIQGCVVTLTNITARKQSEQALQESQERFRRAVLYSPIPIMLHAEDGEVLQINQAWT 347

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD- 523
            L       +         A    +   + +   L+       D      + T+   +  
Sbjct: 348 ELTGYTHQDIPTIADWTQKAYGTRQGLVQENIDQLYH-----LDQPIGEGEYTIITRNGS 402

Query: 524 -SVLEYSIIPL-----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV---- 573
             + ++S  PL          + T ++VT   +AE  L + N  L    E +   +    
Sbjct: 403 TRIWDFSSAPLGKLSDGRRMVISTALDVTLRKQAELELQQANATLEVRVEERTKALQQEL 462

Query: 574 ---QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                   ELR    +   F  +L+ +  G ++   +Q +   +  +  +
Sbjct: 463 QTRHQAEQELR---ASQARFAGILEIASDGIISVDANQRIILFNQGAEKM 509


>gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM
            6578]
          Length = 1278

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/672 (18%), Positives = 254/672 (37%), Gaps = 82/672 (12%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ--AGDILWANISYKKNTETEGIVFQK 235
            +       + LS     ++ + ++L   V+  D      +   N   ++ T   G+  QK
Sbjct: 374  ITHRKRTERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYMERIT---GVPRQK 430

Query: 236  AIG-ESRKLFKEEIKKRMI--------SSSALEKNFCETVSTLEHGNNKSYKIVR--VLN 284
            A+G    +LF     + +                     V       ++  K+ +  VL 
Sbjct: 431  ALGVPETRLFPPPFSEELEVLNRKILEDPLTPVLVPSMEVEFPHQEESRIVKVQKRGVLT 490

Query: 285  SFGEA----GIAIDVSKEITVNDQLTHTYEILH-----------------------NLTV 317
              GE      +  D++++    ++L      L                          +V
Sbjct: 491  PEGELDHILVLLEDITEQRRTEEELERYRTHLEEEVARKSAELARAAMEMDAILRSTESV 550

Query: 318  AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            AI   +++  +Q  N +   L  +   +    P  +     L     +  Q+     +  
Sbjct: 551  AICSMNRDLRIQIFNPTLARLSRM---YFKRPPRREMRFTDLFPTRTMQRQVETAVSRVL 607

Query: 378  IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVK 434
                + +  +      LP    + +    N  G   G   +  ++T +  +E +    ++
Sbjct: 608  SGQTFTTRFSISRRNLLPLHLEVVISPKRNEEGEILGATVIAMDITQRATVERQ----MR 663

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            +     D    G  +   +  I  +NP    +          G  +  +       ++  
Sbjct: 664  LFKAIADTAPYGTVIIDANHTIVYANPYMARI---------HGYRLEEVMGQHLSIFHTE 714

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY----SIIPLPNAQTMLTFV-----NV 545
            + ++     +T  +D        +  +    L +    +   + + +  +T++     ++
Sbjct: 715  EQYEKLIEELTRAEDVGVMPSQEIWHVYQGQLPFPMLTTATFIKDEEGHVTYIGIVSLDM 774

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +    AE+ L E  E   +A   K+ F+ ++S+E+R+PL  IIGFTDLL +S     + K
Sbjct: 775  SLQKEAEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASSF---PSGK 831

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            ++ Y++ I +S   LL L+NDILDL+ ++AG M L+YS + L   + E+     T++   
Sbjct: 832  EASYLDAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENK 891

Query: 666  NIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDF 719
             +   +  +     +   D  RL Q+   ++ NA+ F+ +G         L       D 
Sbjct: 892  GLSFILDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGTLHTEESKVDL 951

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              SV++ G  I  +  +++F  F  ++     +  G GLGL+I +  + + GG +S+ S 
Sbjct: 952  TISVEDTGIGIRPEEREAIFQSFHQSSGQDSRKYGGTGLGLTISKRLVEMMGGTISVESE 1011

Query: 778  DEGVTTINCRIP 789
                TT   RIP
Sbjct: 1012 YGKGTTFTVRIP 1023



 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 113/350 (32%), Gaps = 42/350 (12%)

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKE----ITVNDQLTHTYEI 311
           +A    F    S    G      I   +       + +DV  E     ++ +Q      +
Sbjct: 208 AAPHDTFHGRFSFPGRGRTSFLVIPLPVQGRIRPFLLLDVHAETLYFESLQEQRRLFTSV 267

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVE----LWEIDLAFLATNP---SNDELLEFLRSANK 364
           L + T  I + D +R + + N +F      L    L  L   P    +  +   LR   +
Sbjct: 268 LDSFTDYILVTDSDRRILYANTAFETWAYLLEGRPLPSLVGKPISLVSRAIDAHLRPLLE 327

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
             E+      +E I   +++ E   +    P  +              + +  N+T +  
Sbjct: 328 EAEKSATVILRE-ISWQHRAEEITTEVTIFPLHKDYETAR-------WLIILHNITHRKR 379

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLW--------KTEENRL 474
            E   +   +   + ++ L  GV    P  D  + L NP    +            E RL
Sbjct: 380 TERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYMERITGVPRQKALGVPETRL 439

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS----LQGTLELLSDSVLEYSI 530
            P      +     +   +     L  ++   F  + +S    +Q    L  +  L++ +
Sbjct: 440 FPPPFSEELEVLNRKILEDPLTPVLVPSMEVEFPHQEESRIVKVQKRGVLTPEGELDHIL 499

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + L +         +T+  R E  L      L +    K++ +   + E+
Sbjct: 500 VLLED---------ITEQRRTEEELERYRTHLEEEVARKSAELARAAMEM 540



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/395 (12%), Positives = 112/395 (28%), Gaps = 57/395 (14%)

Query: 119 LKFHHYIKLSKATEKLRKEGQS-FDLVAETQND---CAIKIEGRVSGSCAFLRILSLDGI 174
           ++      L +            F      +       + ++GR+       R   L  +
Sbjct: 195 VEPDARKSLEEFLAAPHDTFHGRFSFPGRGRTSFLVIPLPVQGRI-------RPFLLLDV 247

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-NTETEGIVF 233
           ++E    TL  + L     +F  + DS    +   D    IL+AN +++      EG   
Sbjct: 248 HAE----TLYFESLQEQRRLFTSVLDSFTDYILVTDSDRRILYANTAFETWAYLLEGRPL 303

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--------- 284
              +G+   L    I   +       +     +       +++ +I   +          
Sbjct: 304 PSLVGKPISLVSRAIDAHLRPLLEEAEKSATVILREISWQHRAEEITTEVTIFPLHKDYE 363

Query: 285 SFGEAGIAIDVSKEITVND----QLTHTYEILHNLTVAIAIFDQ--NRYLQFHNRSFVEL 338
           +     I  +++           Q     ++L  L + +   D   +  +   N     +
Sbjct: 364 TARWLIILHNITHRKRTERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYMERI 423

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY----KSSETHKDTWHL 394
             +        P                E LN K  ++ +  V     +    H++   +
Sbjct: 424 TGVPRQKALGVPETRLFPPPFSEEL---EVLNRKILEDPLTPVLVPSMEVEFPHQEESRI 480

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY------------NTLVKVQGETID- 441
              Q   V+         + + E++T Q   E +                 ++    ++ 
Sbjct: 481 VKVQKRGVLTPEGELDHILVLLEDITEQRRTEEELERYRTHLEEEVARKSAELARAAMEM 540

Query: 442 ------HLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
                   S  +     D RI++ NP    L +  
Sbjct: 541 DAILRSTESVAICSMNRDLRIQIFNPTLARLSRMY 575


>gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 959

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 120/645 (18%), Positives = 247/645 (38%), Gaps = 57/645 (8%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           +     ++L   +  +++L D+ +  +W  D+     + N +        G    + IG+
Sbjct: 191 QRERTGRQLIESMERYRLLVDTANEGIWAMDREHVTTYVNAAMADMI---GYSPDEMIGQ 247

Query: 240 SRK--LFKEEIK---KRMISSSALEKNFCETVSTLEHGNNKSYKIV------RVLNSFGE 288
             +   F E+++   +RM      E +  E       G      +             G 
Sbjct: 248 KVEDYFFPEDMELHSQRMARRHGGEDDVYERRFRRRDGKELWTMVSAKALKGDRNEFNGS 307

Query: 289 AGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             +  D++      + L         I++ +   + + D +      N+ F   +  D +
Sbjct: 308 FAMFTDITLRKEAQNALAQSELLLRTIINTIPDLVWLKDIDGRYLQCNKKFERFFGADES 367

Query: 345 FLATNPS----NDELLEFLRSANK----LPEQLNWKTWKENIFSVYKSS-ETHKDTWHLP 395
            +         N EL +F R  ++           + W   +   Y    ET K   +  
Sbjct: 368 AIIGKDDYAFFNKELADFFRDNDRKAIEAGGPRINEEWLTFVEDDYSGLFETIKSPMYDA 427

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +G+ +          G + +   +T +   E       +      +    G+A+    G 
Sbjct: 428 HGRLI----------GVLGIAREITARKMAEEALRESEERFKALHNASFGGIAIHDK-GV 476

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           I   N     ++    + L     +  +A        +     + A     +++  +   
Sbjct: 477 ILECNLGLSEMFGYARDELIGMDGLFLVAERSR----DVVMAHIRAGYEKPYEEYGRRKN 532

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           G    +    LE   +P          F ++TDSV+A +AL +  EA   A   K+ F+ 
Sbjct: 533 GEEFPMR---LEARNLPYKGKMVRAVEFRDITDSVKAAQALLDAKEAAESATRAKSEFLA 589

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  ++G   LL+T++      +Q +Y+     S+  L  L+ DILD++ ++
Sbjct: 590 NMSHEVRTPLNGVLGMLQLLQTTEQ---TDEQKEYILGAIKSTKRLTRLLADILDISKIE 646

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSK 693
           AG +++  +      L   + +       E ++      D +     + D  R+ QI   
Sbjct: 647 AGKLQIIEAEFFTACLQESIMEIFRPTAREKSLAFDFHVDAQMPPMLIGDETRVRQILFN 706

Query: 694 ILSNAMDFSSKGSTVI---LKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           ++ NA+ F+  GS  +   +  A+++G    +F+V + G  I ++  K +F  FV     
Sbjct: 707 LVGNALKFTESGSVQVDAMVLPAKNSGAVRVLFAVSDTGIGISDEQLKDIFEPFVQGERS 766

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             R  +G GLGL+IV   + + GG + I ++    TT+   +P K
Sbjct: 767 YTRCYQGAGLGLAIVRKLVRILGGEMVIDNTAGNGTTVYVSLPFK 811



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 100/300 (33%), Gaps = 44/300 (14%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +++         L+    + + + +++  LVW +D  G  L  N  +++    +      
Sbjct: 312 TDITLRKEAQNALAQSELLLRTIINTIPDLVWLKDIDGRYLQCNKKFERFFGADESAIIG 371

Query: 236 AIG------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------ 283
                    E    F++  +K + +           ++ +E   +  ++ ++        
Sbjct: 372 KDDYAFFNKELADFFRDNDRKAIEAGGPRINEEW--LTFVEDDYSGLFETIKSPMYDAHG 429

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELW 339
              G  GIA +++      + L  + E    L       IAI D+   L+  N    E++
Sbjct: 430 RLIGVLGIAREITARKMAEEALRESEERFKALHNASFGGIAIHDKGVILE-CNLGLSEMF 488

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ- 398
                 L        + E  R                +I + Y+    +++     NG+ 
Sbjct: 489 GYARDELIGMDGLFLVAERSRDVVM-----------AHIRAGYEK--PYEEYGRRKNGEE 535

Query: 399 -TLHVIVTSNPRGGTIWM---FENLTVQV-------DLETKYNTLVKVQGETIDHLSEGV 447
             + +   + P  G +     F ++T  V       D +    +  + + E + ++S  V
Sbjct: 536 FPMRLEARNLPYKGKMVRAVEFRDITDSVKAAQALLDAKEAAESATRAKSEFLANMSHEV 595


>gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1436

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 94/507 (18%), Positives = 197/507 (38%), Gaps = 27/507 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V      T  IL +    I     +  + F N +   +       +    ++  +   
Sbjct: 429 EQVKTTEERTRLILDSADEGIYGMATDGQITFVNTATCRMLGFAPEEMIGQKAHPLI--- 485

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHK---DTWHLPNGQTLHVIVTSNPRG----- 410
               +  P+   +   +  + +  ++ E  +   +     +G    V   + P       
Sbjct: 486 ---HHHRPDGSPYPIEECPMRAACQAGEVRRVDDEFLWRKDGTGFPVEYATTPIVKDGKI 542

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G +  F ++T +   + +    +  Q   ++ +   + V     R    N A+  ++ T
Sbjct: 543 LGAVVSFTDITERKRAQEELAYRLTFQRALLESIPYPMFVKDAHARFISCNKAYERVFNT 602

Query: 470 EENRLSPGT--HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             + L   T   +  +     R +++ D   +  A   S++   +   G       SV  
Sbjct: 603 MADFLKGKTVLDLEYLPEVDRRKFHDEDTAVIREASRRSYELPIQYADGRTHTTLYSVDG 662

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           + +        +   V+++D  R    L        +A ++K+ F+ ++S+E+R+P+  I
Sbjct: 663 FKLCDGSPGGLIGLLVDISDQKRVAEELRLAKAKAEEATQMKSMFLANMSHEIRTPMNAI 722

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG + L   ++   L  KQ  Y+  +  + T LL ++NDILD + ++AG + L      L
Sbjct: 723 IGLSHLALKTQ---LTPKQRDYIGKVHNAGTSLLAVINDILDFSKIEAGKLDLEVVDFKL 779

Query: 648 NDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++++  V    A K HE  +  +  ++ G     + D  RL QI +  ++NA+ F+ +G 
Sbjct: 780 DEVITSVTTLTAQKAHEKGLEFLAHVTPGIPEFLLGDPLRLGQILTNFVNNAVKFTERGE 839

Query: 707 TVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             +    ++   +     FSV++ G  +  +    +F  F        R   G GLGL+I
Sbjct: 840 IRLNIELIERTGEKLQLKFSVRDTGIGMTTEQAAKLFQPFTQADMSTTRKHGGTGLGLTI 899

Query: 761 VESFINLHGGHVSISSSDEGVTTINCR 787
               + L GG + + S     +T    
Sbjct: 900 CRRLVELMGGRIWLESEPGAGSTFYFT 926



 Score = 64.6 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 98/290 (33%), Gaps = 44/290 (15%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
           T    +++       +++ DS D  ++     G I + N +        G   ++ IG+ 
Sbjct: 424 TQELLEQVKTTEERTRLILDSADEGIYGMATDGQITFVNTA---TCRMLGFAPEEMIGQK 480

Query: 241 RKLFKEEIKKR----------MISSSALEKNFCETVSTLEHGNNKSYKI---VRVLNSFG 287
                   +            M ++    +        L   +   + +      +   G
Sbjct: 481 AHPLIHHHRPDGSPYPIEECPMRAACQAGEVRRVDDEFLWRKDGTGFPVEYATTPIVKDG 540

Query: 288 EAGIAI----DVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           +   A+    D+++     ++L +       +L ++   + + D +      N+++  ++
Sbjct: 541 KILGAVVSFTDITERKRAQEELAYRLTFQRALLESIPYPMFVKDAHARFISCNKAYERVF 600

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK--SSETHKDTWHLPNG 397
                FL      D  LE+L      PE ++ + + +   +V +  S  +++      +G
Sbjct: 601 NTMADFLKGKTVLD--LEYL------PE-VDRRKFHDEDTAVIREASRRSYELPIQYADG 651

Query: 398 QTLHVIVTSNPR--------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +T H  + S           GG I +  +++ Q  +  +         E 
Sbjct: 652 RT-HTTLYSVDGFKLCDGSPGGLIGLLVDISDQKRVAEELRLAKAKAEEA 700



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 69/183 (37%), Gaps = 23/183 (12%)

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           RK+G  F +   T     I  +G++ G  A +    +        E     ++L+  ++ 
Sbjct: 521 RKDGTGFPVEYATT---PIVKDGKILG--AVVSFTDIT-------ERKRAQEELAYRLTF 568

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR--- 251
            + L +S+ + ++ +D     +  N +Y++   T     +       +   E  +++   
Sbjct: 569 QRALLESIPYPMFVKDAHARFISCNKAYERVFNTMADFLKGKTVLDLEYLPEVDRRKFHD 628

Query: 252 ---MISSSALEKNFCETVSTLEHGNNKSYKIVRV-----LNSFGEAGIAIDVSKEITVND 303
               +   A  +++   +   +   + +   V        +  G  G+ +D+S +  V +
Sbjct: 629 EDTAVIREASRRSYELPIQYADGRTHTTLYSVDGFKLCDGSPGGLIGLLVDISDQKRVAE 688

Query: 304 QLT 306
           +L 
Sbjct: 689 ELR 691



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGTH--I 480
           +L  +  T  +     +D   EG+     DG+I   N A   +     E  +    H  I
Sbjct: 426 ELLEQVKTTEERTRLILDSADEGIYGMATDGQITFVNTATCRMLGFAPEEMIGQKAHPLI 485

Query: 481 RNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
            +     S Y  E         A  +   DDE        +  +   +EY+  P+     
Sbjct: 486 HHHRPDGSPYPIEECPMRAACQAGEVRRVDDEFLWR----KDGTGFPVEYATTPIVKDGK 541

Query: 537 --QTMLTFVNVTDSVRAERALTEK 558
               +++F ++T+  RA+  L  +
Sbjct: 542 ILGAVVSFTDITERKRAQEELAYR 565


>gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 916

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 120/634 (18%), Positives = 244/634 (38%), Gaps = 42/634 (6%)

Query: 173 GIYSELAETTLKCKKLSNHIS-VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           G  +ELA+     +     +   F+ + + L  L+   D       +   Y+++ E    
Sbjct: 16  GSEAELADLLASIRTAGTTLEPAFRGILEGLGDLLSRVDA------SYEQYERDLELRTR 69

Query: 232 VFQ---KAIGESRKLFKEEIKKRMISSSALEKNFCETVS-TLEHGNNKSYKIVRVLNSFG 287
             +     +  + +  ++ +  R  +  +L K   + +    E     + + + VL+   
Sbjct: 70  SLEISSAELSAANEKLRQSLAGRDNALRSLRKTIRDHLPEANEDAETLAEEDIAVLSRRV 129

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
            A +A    +      +L +    L    + ++I D    + + N  F  +       L 
Sbjct: 130 AAMVA----ESEHGLRELANQKFALDQHAI-VSITDTAGIITYANDRFCAISGYAREELI 184

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                      + ++   P +L    W   +       E         +G    V  T  
Sbjct: 185 GQNH------RIVNSGIHPPELFRDMWHTIVLGKVWHGEVCN---RARDGHLYWVNATVV 235

Query: 408 PR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           P           I +   +T +  +E + +  + +  E I+++   + +    GR    N
Sbjct: 236 PLLDAKGEPERYIAIRTEITDRKRMEAQLSEQLHLVEELIENIPLPIYLKDGSGRYIRLN 295

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            AF   ++         T    + A  +R + E D     A    +++    S  G    
Sbjct: 296 RAFEQFFEVRREAFIGRTLHDLLPAEDARQHAEMDADLFAAKGTQTYEATVHSQDGIAHE 355

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                   +      +  +   V++TD  RAE  +    EA   A+  K+ F+ ++S+E+
Sbjct: 356 TIYRKAVLTRRDGSVSGLLGIIVDITDRKRAEIEVLRAKEAAEAANRAKSDFLANMSHEI 415

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  +IG TDL   +   +L  +Q +Y+    +S+  LL ++NDILD + ++AG +++
Sbjct: 416 RTPMNGVIGMTDLALET---ALTEEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQV 472

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
                 L+ L+ +  + +A + HE +I I       +  FV  D  R+ Q+   ++ NA+
Sbjct: 473 EDIPFDLHRLIADTLKPLALRAHEKDIEILSDVVHDVPRFVKGDPSRIRQVLVNLVGNAI 532

Query: 700 DFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
            F+ +G       +++    +    F+V++ G  I  D    +F+ F        R   G
Sbjct: 533 KFTEQGEIALQADLMQLQNGHAVIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGG 592

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            GLGLSI    + L GG + + S     +T +  
Sbjct: 593 TGLGLSICRRLVELMGGTLWLHSEPGKGSTFHFS 626


>gi|46201674|ref|ZP_00208203.1| COG2202: FOG: PAS/PAC domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 648

 Score =  334 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 159/622 (25%), Positives = 276/622 (44%), Gaps = 43/622 (6%)

Query: 27  FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86
            G  A ++L   + ++ L+R R      +    +  S       +    L         W
Sbjct: 36  LGIGALLILIPALAVLALLRWR------MVGLAADASRAAGLAERLTESLLAAPDGFYAW 89

Query: 87  DGKDET--PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLV 144
            G +       +  L        T++  +            +L  A  +LR+EG  F+L 
Sbjct: 90  LGAEREICSRRLAVLLGLFG--GTESTFMDVLESFAAADAAQLDGAARRLREEGAGFELE 147

Query: 145 AETQNDCAIKIEGRVSGSCA----------FLRILSLDGIYSELAETTLKCKKLSNHISV 194
              ++        R +G  A           + +  +    +  AE   +   L+     
Sbjct: 148 LRLRDGGR---RVRAAGVRASSPEGTALADLIWMHDVTEGAAFEAELATRLAGLAAERER 204

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE----EIKK 250
              L   L   VW RD    +L  N +Y +  +        A+    +L  +    E + 
Sbjct: 205 IDGLLGVLPIPVWVRDDDLSLLHVNRAYARAVDVAS--PHAAVAGQIELASDGSVREARA 262

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-----AGIAIDVSKEITVNDQL 305
               + A  +   E+   +  G  +  +I        +     AG A+D+++   +  +L
Sbjct: 263 LAARARAAGEPRAESFHLVLGGQRRFTEITEAPFEAADGGLLTAGYALDLTRIEDLQVEL 322

Query: 306 THTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                   ++L +L  AIAIF  +  L F N +F  LW ++  +L   P+   +L+ LR 
Sbjct: 323 ARHASAHAQVLEHLATAIAIFSTDTRLTFFNTAFTRLWRLEAEWLQAQPTYGAVLDSLRE 382

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTSNPRGGTIWMFENLT 420
              LPE  +++ +KE+    + S     +T  HLP+G+TL  ++ ++P GG I+ +E++T
Sbjct: 383 RRLLPEVADYRAYKEDELKRFISLIDAAETLLHLPDGRTLRRMIAAHPYGGLIFTYEDVT 442

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             + LE  +NT + VQ ET+DHL EGVAVF  DGR++L NPA+  +W      L    H+
Sbjct: 443 DTLALERSFNTALAVQRETLDHLHEGVAVFRGDGRLRLFNPAYARIWNLPVTLLETEPHL 502

Query: 481 RNIAATCSRYY----NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             +      Y+      +  W      + +  + R    G +E L DS+++++ +PLP+ 
Sbjct: 503 NELVEAHRPYFEGGAERASVWPEVRERLVALFNTRAPQSGRVERLDDSIVDFASVPLPDG 562

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +LT+++VTDS R ERAL E+NEAL  AD +K+ F+ +VS E+R PLT +IGF+++L  
Sbjct: 563 AMLLTWLDVTDSARVERALRERNEALAAADLLKSEFIANVSAEVRKPLTTVIGFSEMLAA 622

Query: 597 SKLGSLNSKQSQYVEYISASST 618
              G LN +Q +Y   I+ +  
Sbjct: 623 EYFGKLNKRQHEYARGITEAGQ 644


>gi|27377398|ref|NP_768927.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27350542|dbj|BAC47552.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 833

 Score =  334 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 104/568 (18%), Positives = 230/568 (40%), Gaps = 35/568 (6%)

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT- 300
           +L + +++K +     +       V+ ++      +   R +    +   + ++S+    
Sbjct: 3   RLLRRQLRKHLGVEGEVPAALQSFVAAVDSA-YTDFDSDRAMVERSQELSSKELSEARDK 61

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFL 359
             +      + + +++   +++D +  L  +NR + ++     +  +    S + +L   
Sbjct: 62  ATEAQRRLVDAIESISEGFSLYDADDKLVIYNRRYRDMHGTASINVVNQGVSFETILRNA 121

Query: 360 RSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
            ++ ++ +     + W E   + ++  +         +G+ + +       GGT+  + +
Sbjct: 122 TASGEIRDAEGRVEAWIEQRLAQHRDPK-GTHVQRRSDGRWIQINERKTDDGGTVATYTD 180

Query: 419 LTVQVDLETKYNTLVKVQGETIDH--LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +T     E       +      +   ++  +  F  DG I+ +N  F  +++ E +    
Sbjct: 181 ITDVKKAEQAIQESEQRLRVIAEAAPMAVAIVTFD-DGIIRYANRRFSEMFELEGS---- 235

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--------ERKSLQGTLELLSDSVLEY 528
                 +       Y +    + F   +T            +R   +    L++   +E+
Sbjct: 236 ----SALGLQAKTLYADPQHRERFIGALTEHGHVEGMEMLLKRVGGEEFWALIASQRVEF 291

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              P      +    +++D  R E  L +   A  +A   K+ FV ++S+ELR+PL  II
Sbjct: 292 EGRP----AMINGLADISDRKRMEGELHKAIWASEQATRAKSDFVANMSHELRTPLNAII 347

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++++L      +    +   +  I  +   LL L+++ILDL+ ++AG M L   T  L 
Sbjct: 348 GYSEILFEDAQSAGRESEMADLRKIQDAGKHLLGLIDNILDLSKIEAGKMTLYLETFELR 407

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +++ V  ++     +    +      ++G+  +D  ++ Q    +LSNA  F+ +  T+
Sbjct: 408 PMIDSVAATVTPLAKKTGNALVANCADEIGTIHSDLTKVRQTLFNLLSNACKFT-RNGTI 466

Query: 709 ILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
            L A RD         F V++ G  +  D    VF  F        R   G GLGL+I +
Sbjct: 467 TLTALRDTNAAGEWIEFQVRDTGIGMTPDQQAKVFEAFTQADDSTTRVYGGTGLGLAITK 526

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
           SF  L GG V+++S     T    R+P+
Sbjct: 527 SFCRLMGGDVTLTSEAGKGTAFVVRLPA 554



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 87/290 (30%), Gaps = 31/290 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI-VFQKAIG 238
           E +    K +          +S+       D    ++  N  Y+    T  I V  + + 
Sbjct: 54  ELSEARDKATEAQRRLVDAIESISEGFSLYDADDKLVIYNRRYRDMHGTASINVVNQGVS 113

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETV----------STLEHGNNKSYKI-VRVLNSFG 287
               L        +  +    + + E                  + +  +I  R  +  G
Sbjct: 114 FETILRNATASGEIRDAEGRVEAWIEQRLAQHRDPKGTHVQRRSDGRWIQINERKTDDGG 173

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILH------NLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                 D++        +  + + L        + VAI  FD +  +++ NR F E++E+
Sbjct: 174 TVATYTDITDVKKAEQAIQESEQRLRVIAEAAPMAVAIVTFD-DGIIRYANRRFSEMFEL 232

Query: 342 DLA---FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           + +    L       +     R    L E  + +        +       ++ W L   Q
Sbjct: 233 EGSSALGLQAKTLYADPQHRERFIGALTEHGHVEG-----MEMLLKRVGGEEFWALIASQ 287

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +          G      +++ +  +E + +  +    +     S+ VA
Sbjct: 288 RVEFEGRPAMINGLA----DISDRKRMEGELHKAIWASEQATRAKSDFVA 333


>gi|94263975|ref|ZP_01287777.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455647|gb|EAT05829.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1048

 Score =  334 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 219/549 (39%), Gaps = 45/549 (8%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           N++  ++  + N+      A+  +    V  +L      +      I I D +  +++ N
Sbjct: 131 NDRILELTELANAVLSFHDAL--NDRHRVEKELRKLSLAVDQSPSGIIITDLDGNIEYAN 188

Query: 333 RSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           ++F+       +  L  NP       FL+  + L E    + W           E +   
Sbjct: 189 QAFLACTGYQKMEVLGRNP------RFLKDESTL-ESHYQEMWNTIAAGHTWKGEFYN-- 239

Query: 392 WHLPNGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLETKY-------NTLVKVQ- 436
               +G+      T  P     G     + + +++T ++ +E +          LV+ Q 
Sbjct: 240 -RRKDGREYIEANTVAPIKQADGSITNYLAIKDDVTDKMKMEVELLRHRDHLAELVEEQT 298

Query: 437 ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
                 ++  ++G+      G+I   NPA   ++      +  G+ I  +     R  ++
Sbjct: 299 VSIKAIVETAADGIITIDQQGKILSFNPAAEVIFGYPAGEM-IGSKINRLMPEPHRSQHD 357

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD---SVR 550
               +   +      + +  +       S   L  ++  +             D      
Sbjct: 358 QYLRNYLQSGTAKVINTQVEVMALRRDGSTFPLSLAVSAMEIGGEKRFTAIFRDISSQKE 417

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+AL    +A   A+  K+ F+ ++S+E+R+P+  +IG + +   ++   L  KQ  Y+
Sbjct: 418 AEKALVTARQAAEAANRTKSDFLANMSHEIRTPMNAVIGLSHICLQTE---LTPKQRDYL 474

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  S+  LL ++NDILDL+ +++G +++      L ++L+ +   +  ++    ++ K
Sbjct: 475 EKVHNSAHSLLGILNDILDLSKIESGRLEVEEIPFNLEEVLDRLHTLVDARIAAKPLQFK 534

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKN 725
           +    ++      D  RL Q+ + ++ NA+ F+ +G   +  A            F+V++
Sbjct: 535 LDLPPEVPVNLRGDPLRLGQVLTNLVGNAVKFTEEGEIAVTVAVVAEAEQEITLSFTVRD 594

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  + ++ C  +F  F        R   G GLGLSI    + L GG + + S     ++
Sbjct: 595 NGIGMTQEQCARLFQPFSQADTSTTRKYGGTGLGLSISRQLVELMGGEIRVESEAGKGSS 654

Query: 784 INCRIPSKE 792
               +P ++
Sbjct: 655 FIFTLPLQK 663



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 94/314 (29%), Gaps = 54/314 (17%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            L +  L        +      ++   +    +  D     +   D  G+I +AN ++  
Sbjct: 134 ILELTELANAVLSFHDALNDRHRVEKELRKLSLAVDQSPSGIIITDLDGNIEYANQAFLA 193

Query: 225 NTETEGIVFQKAIGESRKLFKEEIK-----KRMISSSALEKNFCETVSTLEHGNNKSYK- 278
            T   G    + +G + +  K+E       + M ++ A    +            +  + 
Sbjct: 194 CT---GYQKMEVLGRNPRFLKDESTLESHYQEMWNTIAAGHTWKGEFYNRRKDGREYIEA 250

Query: 279 --IVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE---------------ILHNLTV 317
             +  +  + G       I  DV+ ++ +  +L    +               I+     
Sbjct: 251 NTVAPIKQADGSITNYLAIKDDVTDKMKMEVELLRHRDHLAELVEEQTVSIKAIVETAAD 310

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            I   DQ   +   N +   ++      +  +  N            +PE    ++  + 
Sbjct: 311 GIITIDQQGKILSFNPAAEVIFGYPAGEMIGSKIN----------RLMPEPH--RSQHDQ 358

Query: 378 IFSVYKSSETHKDTWH-------LPNGQT--LHVIVTSNPRGG---TIWMFENLTVQVDL 425
               Y  S T K             +G T  L + V++   GG      +F +++ Q + 
Sbjct: 359 YLRNYLQSGTAKVINTQVEVMALRRDGSTFPLSLAVSAMEIGGEKRFTAIFRDISSQKEA 418

Query: 426 ETKYNTLVKVQGET 439
           E    T  +     
Sbjct: 419 EKALVTARQAAEAA 432


>gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1095

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 142/639 (22%), Positives = 258/639 (40%), Gaps = 51/639 (7%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
            K++  I       +S D  +W  D   G +LW++ +Y K        F+ +  +  +L 
Sbjct: 3   DKINISIDEIWAALESGDIGIWFWDNSTGKVLWSDHAY-KMLGYYPNEFEMSYEKWVELL 61

Query: 245 KEEIKKRMISSSALEKNFCETVST-----LEHGNNKSYK----IVRVLNSFGE---AGIA 292
             E  +    S A +  F  + S       + G+ K  +    ++R  +        G  
Sbjct: 62  HPEDVEYAQLSVAKQLEFKNSFSVDFRLRAKDGSYKWIRGSGKVIRYADDGSMLYLTGTH 121

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFD------QNRYLQFHNRSFVELWEIDLAFL 346
            D++++      L     IL      IA         +N  L + N  +  ++EID    
Sbjct: 122 TDITEKKNAEILLQEKLYILEE-AEKIAKLGSWDLDIKNNKLFWSNEIY-NIFEIDKDEF 179

Query: 347 ATNPSNDELLEFLR-SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
               S D  +  +     K  + + W++ +       K S   +    +P+G+  +VI  
Sbjct: 180 GA--SYDAFISLVHPDDRKKIDDVYWESVRS------KKSYQVEHRLLMPDGRIKYVIER 231

Query: 406 S----NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
                +  G    +I   +++T +V LE        V     +    G+      G I L
Sbjct: 232 GKTFYDKDGDPIRSIGTVQDITEKVLLERSVKEQEIVFKSIFERAPVGIIFTDILGNIIL 291

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QG 516
            N     L    E+      +I  I         +     L    I  +  E++ +   G
Sbjct: 292 VNNYLAELLD-YEHEDFKNKNISEITFAEDYKKEQIFIQGLLNNEIDYYRIEKRYIKRDG 350

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +L  +  S              +   +N+ D   AE+ L +  E   +A++ K++F+ ++
Sbjct: 351 SLNWVDSSRTSLKDEDGNIKNFISVVLNINDKKVAEQELIKAKENAERANQAKSTFLANM 410

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  IIG   LLK     +L     +YV++++ +S  LL+L+NDI D + +++G
Sbjct: 411 SHEIRTPLNGIIGIAQLLKNE---NLPKHVVEYVKHLNMASHHLLDLINDIFDFSRIESG 467

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            MK+      L D +NEV + +  +  E NI + V  D  + S  + D  R+ QI + +L
Sbjct: 468 EMKIINDIFSLKDTINEVVKVLYYRAKEKNIELTVFVDPLIPSKIIGDSLRVKQILTNLL 527

Query: 696 SNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
            NA+ F+  G     V +K + +   D +F +K+ G  I  D  + +F  F         
Sbjct: 528 GNAIKFTEVGYVSLDVFIKNSTEKSVDILFVIKDTGIGISGDKKQKLFTPFFQGDQSVTK 587

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  G GLGL+IV+  I+   G ++  S     TT    +
Sbjct: 588 KYGGTGLGLTIVKRLIDAMNGDINFISEPGKGTTFYVTL 626


>gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
 gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris
            marina MBIC11017]
          Length = 1660

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 115/532 (21%), Positives = 201/532 (37%), Gaps = 53/532 (9%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
            E  +         ++ N   AI + D        NR   EL++ID          D    
Sbjct: 914  EDALRRSQKQLQAVIDNSPAAIYLKDLEGKYLIFNRVLGELFDIDPQTFLGKTDFDLFPR 973

Query: 358  FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTI 413
             +    +   + +  T         +   TH       +G     I       +P+G   
Sbjct: 974  QIAEKLR---KNDINTLAAGQVQTIEEVVTH------ADGSRHTYIANKFPVLDPQGHVY 1024

Query: 414  WM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             +     N++ +   E +     ++    ID++ + +     D      N  F +    +
Sbjct: 1025 AIGGVSTNISDRKRTENQLRESQQLLRLVIDNIPQLIYWKDHDSIYLGCNQNFAASMGLD 1084

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG-TLELLSDSVLEYS 529
                  G    +  +   ++   S   D    +I++   E   LQ    E   +   + +
Sbjct: 1085 SPEQVIGKT-DDALSKPHKHLAASQQND--ERVISTGIPELHVLQIFNTEQNGNVWADTN 1141

Query: 530  IIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKA------------------D 566
             IPL +        + T+ +++D  +AE+AL + NE L                     +
Sbjct: 1142 KIPLKDPFDNTVGILGTYEDISDRKQAEQALKQVNEELEHRVVLRTKELQAAKEAADAAN 1201

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
              K+ F+ ++S+ELR+PL  I+G+  +LK      L     Q +  I  S   LL L++D
Sbjct: 1202 RAKSDFLANMSHELRTPLNGILGYAQVLKRDHH--LLPCHQQALNTIHQSGEHLLTLIDD 1259

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685
            ILD+A ++A  ++LN S I    LL  +      +  E NI+        L     +D++
Sbjct: 1260 ILDIAKIEARKLELNISDIHFPSLLESIVNLFQMRAQEKNIQFVYRPADSLPQGIQSDKK 1319

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFN 740
             L QI   +LSNA+ F+ +G  V L    +          F++ + G  I  D  + +F+
Sbjct: 1320 CLRQILLNLLSNAIKFTDQG-QVTLSVEIEQHTSQQIKLKFTITDTGIGISPDQIEQIFH 1378

Query: 741  RFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             F        +  G GLGLSI    + L GG +   S +E  +T    IP K
Sbjct: 1379 PFEQVGDLNRRAEGTGLGLSISRQLVELMGGTLQAESCEEKGSTFWFSIPYK 1430



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 62/158 (39%), Gaps = 14/158 (8%)

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            ++ G+ + +++      +L     + +++ D++  L++ +D     L  N ++  +   +
Sbjct: 1025 AIGGVSTNISDRKRTENQLRESQQLLRLVIDNIPQLIYWKDHDSIYLGCNQNFAASMGLD 1084

Query: 230  GIVF-----QKAIGESRKLFK--EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                       A+ +  K     ++  +R+IS+   E +  +  +T ++GN       ++
Sbjct: 1085 SPEQVIGKTDDALSKPHKHLAASQQNDERVISTGIPELHVLQIFNTEQNGNV-WADTNKI 1143

Query: 283  L------NSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
                   N+ G  G   D+S        L    E L +
Sbjct: 1144 PLKDPFDNTVGILGTYEDISDRKQAEQALKQVNEELEH 1181


>gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1242

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 114/674 (16%), Positives = 256/674 (37%), Gaps = 82/674 (12%)

Query: 168 ILSLDGIYSELAETTLK-----------CKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           +L++    +EL ET  +               +    + + + D+   L+  +D     +
Sbjct: 165 LLTIQDQTAELQETIKQLKLQIQQQQVIATNATQEKHLLQAILDNCPALICAKDSQNRYI 224

Query: 217 WANISYKKNTET-EGIVFQKAIGE-SRKLFKEEIKKRMISSSA----LEKNFCETVSTLE 270
             N    +  E       Q+ +G+ +  L    I +++  S        +      + + 
Sbjct: 225 MVN----RQCEIFLNRPAQEILGKTNYDLLPTTIAQKLQESDQKVFDSGRVQQTHQNIVN 280

Query: 271 -HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD 323
            HG  + +  V         +      I  D+++      +L      + + T AIAI  
Sbjct: 281 YHGKIRQFISVNFPIFNQNRHILAVCNIGSDITEGKHQEQRLRLLESAVSHTTDAIAIAQ 340

Query: 324 Q------NRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
                  +  + + N++F  L        +  NP+  + ++            + +  K 
Sbjct: 341 SNPENTTDSQIVYINKAFTNLTGYQPEGIIGKNPNILQGID-----------TDEQQLKR 389

Query: 377 NIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETK 428
              ++ +S     +   +  NG      ++ +P           +++  ++T +    + 
Sbjct: 390 VEVALSQSESIQVELINYRQNGSKYWADLSISPVTDDTGKVSHFVFVQRDITSRKLKTST 449

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR---NIAA 485
                +   + I +    VA+     R    +  +   +   +  L   +H     +I+ 
Sbjct: 450 LQKEREQLQQIITNAPVAVAILDCSMRYIAYSDRWLQEYHLPQESLVGRSHYEIFPHISE 509

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
           TC   Y ++    +   +I+  +D      G+      ++  +  +       ++    +
Sbjct: 510 TCRELYRKA----IAGEVISCSEDVMTYPDGSQGYFRWAIHPWYTLNQEIGGVVIATYPI 565

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            + V+A  A         +   +K+ F+ ++S+E+R+P+  ++G T LL  ++   L++K
Sbjct: 566 DELVKAREA-------ALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTE---LDTK 615

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  +V+ I  S+  LL+++NDILD + ++A  ++L      L + L  +   +A +    
Sbjct: 616 QKDFVQAIRTSADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENK 675

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------ 718
            I +  I D  +  ++  D  RL Q+   ++SN + F+  G  V L+ +R          
Sbjct: 676 GIELAAIVDRNVPRYLRGDPGRLRQVLLNLMSNGIKFTPAGE-VTLRVSRPPNYDINAPL 734

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              + V++ G  IP +  + VF  F        R   G GLGL I +  + + GG + + 
Sbjct: 735 TLRYEVQDTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLE 794

Query: 776 SSDEGVTTINCRIP 789
           S  +  +T    +P
Sbjct: 795 SVVDQGSTFWFTLP 808


>gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 940

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 104/503 (20%), Positives = 195/503 (38%), Gaps = 29/503 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +  Q  +   +  +      I    R +   N+ F +L+      L         L+ 
Sbjct: 304 KRLQQQQDYWQALFEHNGTGNLIVSSERLMLKVNQQFCDLFGYREEELIGQSVRLLHLDQ 363

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNPRGGTIWM 415
                  P  ++ +  K ++ + Y     HKD    W L  G  L +    + + G +W 
Sbjct: 364 QHYEGWAPTFMSVRDGKTHLSAEYPMR--HKDGSLFWCLFTGVRLQL---PDGQRGVVWS 418

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T +   E      + +    +D + E   +     R    N             L 
Sbjct: 419 AIDITERKQAEQT----MALLNFALDTIHEAAYLVDETTRFIFVNQEACRSTGYSREELL 474

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPL 533
               I ++ A            +L      +F+   K   G      ++ +  E+     
Sbjct: 475 TMK-IGDVDAEFPEDQWPVFWQELIRRRAITFEGMHKDCSGRTYPVEITANYFEFD---- 529

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    ++++  + E  L E  E    A   K  F+ ++S+E+R+P+  II    L
Sbjct: 530 GQGYNLGLARDISERKKTEAVLQEAKERAEAASRAKTEFLANMSHEIRTPMNGIISMAHL 589

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ ++   L S+Q +Y+  +  SS  LL L++DILD++ ++AG ++L Y+   +   + E
Sbjct: 590 LRMTE---LTSEQQEYLASLQISSKNLLALISDILDISKIEAGKLELEYADFSVRATIEE 646

Query: 654 VKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK- 711
           V  S   ++ +  + I    SDG     + D  R  QI   +L NA+ F+ +G   I+  
Sbjct: 647 VVASQMPRITQKRLDICTELSDGLPEILLGDSLRFKQILLNLLGNAIKFTEQGGISIVAK 706

Query: 712 -AARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            +AR +   I    + + G  +  ++ + VF+ F        R   G GLGLSI    + 
Sbjct: 707 PSARHDNQLIMRIMIADTGIGMSPEVLERVFSPFEQADSSTTRKYGGTGLGLSICRRLVE 766

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L GG +  +S     +T    +P
Sbjct: 767 LMGGRIWAASRPGSGSTFFVELP 789



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 18/168 (10%)

Query: 280 VRVLNSFGEAGI---AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           VR+    G+ G+   AID+++       +      L  +  A  + D+     F N+   
Sbjct: 404 VRLQLPDGQRGVVWSAIDITERKQAEQTMALLNFALDTIHEAAYLVDETTRFIFVNQEAC 463

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
                    L T    D   EF       PE      W+E I    + + T +      +
Sbjct: 464 RSTGYSREELLTMKIGDVDAEF-------PEDQWPVFWQELIR---RRAITFEGMHKDCS 513

Query: 397 GQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           G+T  V +T+N      +G  + +  +++ +   E       +     
Sbjct: 514 GRTYPVEITANYFEFDGQGYNLGLARDISERKKTEAVLQEAKERAEAA 561


>gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 456

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 165/379 (43%), Gaps = 11/379 (2%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + +    D +       +      D  ++G+ +    GR    N           + +  
Sbjct: 79  QEIGSYRDFKHSLQESEEKFRTIFDKANDGIYLIDLHGRFIDVNAMACKQTGYSRDEMLQ 138

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLP 534
             +             +    +L+    TSF+     K        +   +++Y      
Sbjct: 139 MAYKDMGFPEID---YKKQVKELYKKGYTSFESASILKDDSTAYGQMRSQIIQYG----G 191

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T+  +AE A+ E       A+  K+ F+ ++S+ELR+PL +IIGF+D+L
Sbjct: 192 KTAILSIARDITERKKAEEAILEAKIEAESANRAKSEFLANMSHELRTPLNSIIGFSDVL 251

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G LN  Q +Y   +  +   LL+++NDIL ++ ++ G M+L+ +  +++D ++EV
Sbjct: 252 YNESHGPLNEYQKKYTSNVLRNGKHLLDIINDILSISNIETGTMELHINEFIVSDAIDEV 311

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +  +     E +I +    D  + +   D  +  QI   ++ NA+ F+ +G +V +    
Sbjct: 312 ESLMILIASEKDIDLTCNIDIGMPTIKTDMIKFKQILYNLVHNAIKFTDQGGSVTIGGKI 371

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
            +     SVK++G  +  +    +FN F         +  G GLGL++V+ F+ +HGG +
Sbjct: 372 SDDLVHISVKDSGIGVSPEDQDKLFNPFFQLDSSNARKYGGTGLGLALVKKFVEMHGGEI 431

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S     +T    IP+K
Sbjct: 432 WVESEVGKGSTFTFIIPTK 450


>gi|254413568|ref|ZP_05027338.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179675|gb|EDX74669.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1315

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 133/685 (19%), Positives = 272/685 (39%), Gaps = 70/685 (10%)

Query: 160  SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
             G  A   +     + +   E       L+   S    + +++   +   D +G I++AN
Sbjct: 412  VGELANSFVQMASQLQASFTELQTLNTALTESESRLNQILEAIPVGISVHDVSGQIIYAN 471

Query: 220  ISYKKNTETEGIVFQKAIG----------ESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
             + K+    + +                 ES +L+  E +  ++ +   EK   + +   
Sbjct: 472  QTSKQLLGIDTLPEATTTDLSGTFHVYQAESEELYPVE-QMPLVRAFQGEKVKVDDMEIR 530

Query: 270  EHGNNKSYKI--VRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHN--------L 315
                    ++    + N  G    AI    D+++       L    + L          L
Sbjct: 531  LPDRRIPLEVYGTPIRNETGTIVAAIATFSDITERKQTEQILADYNQTLATQVRERTVEL 590

Query: 316  TVAIAI-------FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
              A  +       FD N      +     +   D +   + PS ++LL+ +       + 
Sbjct: 591  NEAQRLAHLGNWSFDVNSKKISWSDEVFRICGRDPS--QSEPSYEQLLQQIHRD----DV 644

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTIWMF---ENLTV 421
              ++   E   +  KS E H+      +G   +V+       N  G  + +F   ++++ 
Sbjct: 645  AQFQHDIEQAMTEGKSYE-HEQRIVRSDGSIRYVLAKGEAILNSSGQVVQLFGTVQDISE 703

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            +  +E +     +   +  +++ +   +    G I   NP +  +W+     L       
Sbjct: 704  RKLIEEQLRESEEKFRQLAENIQDVFFILSYTGEILYINPVYEQIWQRTCQSLYDNPRSW 763

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML- 540
              +     Y +     +      T FD   +  +   E+     +     P+P+ +T   
Sbjct: 764  LDSVFPEDYPSTVAAMERQLQDSTDFDQVYRITRPNGEI---RWIRARSFPVPHQKTYRF 820

Query: 541  --TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                 ++TD  + E ALTE  +A   A+  K++F+ ++S+ELR+PL  I+GFT L++ S 
Sbjct: 821  VGIAEDITDRKQIELALTEAKDAAETANRAKSTFLANMSHELRTPLNAIMGFTQLMQRS- 879

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              +  +   + ++ I  SS  LL L+N +LDL+ ++AG + LN +   L  LL +V+   
Sbjct: 880  -STFPADYQENLQIIYRSSEHLLTLINQVLDLSKIEAGRITLNQTVFDLYALLRDVENLF 938

Query: 659  ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--- 714
              K  +  +++      ++  +V  D  +L Q+   +LSNA  F+ +G  + +K +R   
Sbjct: 939  QIKARDKGLQLLFDYSDQVPQYVQTDAVKLRQVLINLLSNAFKFTQEGG-ISVKVSRGID 997

Query: 715  ----------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVES 763
                      +     F +++ G+ +  +  +S+F+ F+ +    Q   G GLGLSI   
Sbjct: 998  VGETPTANKPEEITLQFEIEDTGAGMAAEELESIFDAFIQSKTGKQHQEGTGLGLSISRK 1057

Query: 764  FINLHGGHVSISSSDEGVTTINCRI 788
            F+ L GG ++++S  +  T     I
Sbjct: 1058 FVQLMGGDLTVASQVDQGTVFRFEI 1082


>gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234]
 gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234]
          Length = 989

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 102/533 (19%), Positives = 203/533 (38%), Gaps = 65/533 (12%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLN 370
           + +      ++D +  +   N  F EL+      +      ++L+         P  +L 
Sbjct: 42  IESALEGFVLYDADDRMVAFNSRFEELFS---PRVKLGMRFEDLIRSAVEQGVAPVGELG 98

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
            + W       +++         L NG  + +       GG +  + ++T   +      
Sbjct: 99  VEEWVARRMERHRNPGP-PFKLRLNNGTWIRISEGRTRDGGLVGAYTDITELEEQREHLE 157

Query: 431 TLVKV-----------QGETIDHLS---EGVAVFGPDGRIKLSNPAFRSLWKTEENRL-- 474
            LV+            Q + +D +    EG A++  D R+ + N  +R  +   E  +  
Sbjct: 158 ELVETTEAATERAKAAQRQLLDAIESSLEGFALYDADDRLVVYNSRYRDFFSGPERAVLP 217

Query: 475 -------SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSV 525
                  +PGT    +  T +               I    +  ++ +G   L+    + 
Sbjct: 218 AGPFAVETPGTPFELVIRTFAESGLSPLDGQTVDEWIAQRLERHRNPRGPFNLMHKDGTT 277

Query: 526 LEYSIIPLPNAQTMLTFVNVTD----SVRAER---------------------ALTEKNE 560
           +  S     +  T+  + ++T+      R E                       L    +
Sbjct: 278 IRVSERKTSDGGTICVYSDITELEEHRHRLEELVAKRTAKLERRTEQLRKSREELERARD 337

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A  +A   K+ F+ ++S+E+R+P+  +IG  +LL+ ++   L+ +Q +YV  I  S+  L
Sbjct: 338 AAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTE---LSEQQRRYVSIILHSADTL 394

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
           ++L+NDILD + ++AG ++L     VL D L +  Q++A +  +  + +      ++   
Sbjct: 395 MDLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAADKGLELACHIPPEVPDH 454

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMC 735
            + D  RL QI   ++ NA+ F+  G  V+    +          F V++ G  IPE   
Sbjct: 455 LMGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGQGDHGAHLQFEVRDTGIGIPEAQQ 514

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           + +F  F        R   G GLGL+I        GG + + S     +    
Sbjct: 515 ERIFEAFAQADASTTRQYGGTGLGLAIAAQLAEKMGGRMQLDSKPGVGSVFTF 567


>gi|298674344|ref|YP_003726094.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298287332|gb|ADI73298.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 837

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 111/506 (21%), Positives = 218/506 (43%), Gaps = 31/506 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                  ++    +E   +L  ++   D+N  +   N     +   +          +E+
Sbjct: 348 QALEKSEERYRSIFETAASLITSV---DENGTIVDCNNQIKNILGYEK---------EEV 395

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPRG--- 410
           +    +    P+ +N     E +  +     ++   + +   +G+ + V++ S+      
Sbjct: 396 IGQSMTKIIHPDYVNKS--FEILHEILNYGFSYNKEYKMVRKDGELIDVLINSSGVDKIN 453

Query: 411 ----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                TI +  ++T   + E +     +   +  +  ++ +  +  DG I   N      
Sbjct: 454 GNYSRTICIINDITKSKEFEHELKKSEEKFRKVTEQAADVIIAYDFDGNILYVNNLACEK 513

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
               +N L     I +I    +        + L        +  RK   G++       L
Sbjct: 514 LGYTKNELLSMN-ITDIDPENNIETYRKYWYGLSQNNSVHIETSRKRKDGSVYPAE---L 569

Query: 527 EYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             ++I L     +L F  ++T    AE  L         A + K+  + +V++ELR+PLT
Sbjct: 570 RMTLIDLNGKPVILGFSRDMTVQKEAEENLINAKLEAEAASQAKSDILANVNHELRTPLT 629

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +IIGF+D+L   K G LN  Q  Y+  +  +   LL+L+ DILDL+ +++G   LNY  I
Sbjct: 630 SIIGFSDVLLKGKAGDLNESQKMYLSRVHNNGKHLLDLITDILDLSKIESGKSGLNYERI 689

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            + +L+N++K+ I   +    + +    D  L    AD  ++ QI S +L NA+ F+ +G
Sbjct: 690 SIIELVNDLKEYIQPFVSNKVLILHSRVDSGLNYIYADYIKIKQILSNLLYNAVKFTEEG 749

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
           S + L+ +++  D  FSV + G  IP+   +++F+ F         + +G GLGL++V  
Sbjct: 750 S-ITLEVSQNEDDVQFSVIDTGIGIPKGSHEAIFDSFKQLDSGPARKYQGTGLGLALVNK 808

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +N+HGG + + S  +  +     IP
Sbjct: 809 LVNMHGGQIWVESEIKKGSRFTFTIP 834



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 17/196 (8%)

Query: 293 IDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +D+S+   V + L    +    +     ++I   D++  + + N +  ++  +    +  
Sbjct: 31  LDISERKKVQEDLRKEKKFFERVAETSPISITHLDKSGNIIYANHTAEKVLGLSKNDINR 90

Query: 349 NPSNDELLEFLR-SANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              +D   +      N  P+ +L ++  K+    VY     H   W   NG+ +++ + +
Sbjct: 91  RTYDDVKWKITDYDGNDFPQDELPFELVKKYHQPVY--DVQHAIEW--KNGKRIYLSINA 146

Query: 407 NPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            P         G I   E++T Q + E+     +    E    ++E +        +   
Sbjct: 147 APIFDKYGNFDGMIAAIEDITKQKNTESNLEHALYNSHEREKEINELLNATRTILEVNDF 206

Query: 460 NPAFRSLWKTEENRLS 475
           N A R ++ +    L 
Sbjct: 207 NTAARYIFDSCSRLLG 222



 Score = 45.3 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 53/170 (31%), Gaps = 11/170 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +  F +++ +  ++       K      +     +      G I  +N     +    +
Sbjct: 26  VLVNFLDISERKKVQEDLRKEKKFFERVAETSPISITHLDKSGNIIYANHTAEKVLGLSK 85

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           N ++  T+            N+    +L   ++  +      +Q  +E  +   +  SI 
Sbjct: 86  NDINRRTYDDVKWKITDYDGNDFPQDELPFELVKKYHQPVYDVQHAIEWKNGKRIYLSIN 145

Query: 532 PLPNAQTMLTFVNVTDSVR-----------AERALTEKNEALRKADEIKN 570
             P       F  +  ++             E AL   +E  ++ +E+ N
Sbjct: 146 AAPIFDKYGNFDGMIAAIEDITKQKNTESNLEHALYNSHEREKEINELLN 195


>gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1253

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 110/518 (21%), Positives = 219/518 (42%), Gaps = 46/518 (8%)

Query: 299 ITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
               D+L     +L     ++   + + D +R + + NR+   L       L    + D 
Sbjct: 308 RQQRDELARVGGLLKGTTDSMVEGLLMIDGSRRITYCNRAATLLLHATEQELLGR-TPDA 366

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRG- 410
                 S  ++P+++       +     +S  T  +   + +G   + +  I T    G 
Sbjct: 367 FFFHASSPWEVPQEIFCVADAVSD----ESMGTECEALVISDGGQRRYVSYITTPLQDGA 422

Query: 411 ----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G + +F +++ Q D + +   L +   +T D +   + +    G I+ +N AF   
Sbjct: 423 GISGGHVMVFRDISQQKDDQERIRLLTEAFVQT-DSM---ILITNHRGIIEYANQAF--- 475

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                     G     +     R+ + S   +++ ++I++    R  ++   +       
Sbjct: 476 ------FAQTGYDREEVIGKSPRFPSPSVESEIW-SVISAGQTWRGEMESRKKNGESYWT 528

Query: 527 EYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             S+ P+ +    +T       ++T+    E AL E      +A   K+ F+ ++S+E+R
Sbjct: 529 SMSVTPIKDTHGHVTHYVTVEEDMTERKAMEDALREAKNVAEEASRAKSIFLANMSHEIR 588

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+G T+L   ++   L++ Q +Y+     S+  LL ++ND+LD + V+AG ++L 
Sbjct: 589 TPMNGILGMTELALQTE---LSTTQRRYLTIAHNSAKSLLVIINDVLDFSKVEAGEIRLE 645

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMD 700
            ++    + +  V QSIA   +   I +    D +L    V D  RL QI + +L NA+ 
Sbjct: 646 QTSFDPVETVENVMQSIAYSAYSKGIELMNHIDHRLSHYLVGDPTRLQQILNNLLGNAVK 705

Query: 701 FSSKGST---VILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGV 754
           F+  G     V ++   D      F V + G  IP +   S+F  F     + R +  G 
Sbjct: 706 FTDTGHVLLDVEVQGESDSEAHLHFRVIDTGIGIPANKIDSIFESFSQVEASDRRKFGGT 765

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I    ++L  G + + S     +T +  IP ++
Sbjct: 766 GLGLAITRKLVHLMNGRIWVESHMGEGSTFHFVIPFRK 803



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
             L     +  +L+    + K   DS+   +   D +  I + N +            Q+
Sbjct: 302 RSLYTLRQQRDELARVGGLLKGTTDSMVEGLLMIDGSRRITYCNRAATLLLHA---TEQE 358

Query: 236 AIGESRKLF-----------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
            +G +   F           +E        S       CE +   + G  +    +    
Sbjct: 359 LLGRTPDAFFFHASSPWEVPQEIFCVADAVSDESMGTECEALVISDGGQRRYVSYITTPL 418

Query: 285 ------SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
                 S G   +  D+S++    +++    E        I I +    +++ N++F   
Sbjct: 419 QDGAGISGGHVMVFRDISQQKDDQERIRLLTEAFVQTDSMILITNHRGIIEYANQAFFAQ 478

Query: 339 WEIDLAF-LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
              D    +  +P           +         +TW+  + S  K+ E++  +  +   
Sbjct: 479 TGYDREEVIGKSPRFPSP---SVESEIWSVISAGQTWRGEMESRKKNGESYWTSMSVTPI 535

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +  H  VT       + + E++T +  +E        V  E 
Sbjct: 536 KDTHGHVT-----HYVTVEEDMTERKAMEDALREAKNVAEEA 572



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 11/158 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            +  F  +     L  + + L +V G    T D + EG+ +     RI   N A   L  
Sbjct: 294 VLANFSRVRSLYTLRQQRDELARVGGLLKGTTDSMVEGLLMIDGSRRITYCNRAATLLLH 353

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD----S 524
             E  L   T         S +    + + +  A+     DE    +    ++SD     
Sbjct: 354 ATEQELLGRTPDAFFFHASSPWEVPQEIFCVADAV----SDESMGTECEALVISDGGQRR 409

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            + Y   PL +   +     +     +++   ++   L
Sbjct: 410 YVSYITTPLQDGAGISGGHVMVFRDISQQKDDQERIRL 447


>gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1382

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 120/652 (18%), Positives = 245/652 (37%), Gaps = 53/652 (8%)

Query: 170 SLDGIYSELA---ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-- 224
               +  +LA   E  L    +       K + D++  LV + D+     +AN  Y +  
Sbjct: 142 EDSDVLRDLANCVEGELSLTHIRKSERFLKAISDAMPGLVAYWDKDLVCRFANTPYLEWF 201

Query: 225 ---NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH--GNNKSYKI 279
                   G +    +GE  +LF         + +   ++F  T++  +   G   +  +
Sbjct: 202 GKPADAIIGTLMPDLLGE--RLFAMNQSYIQGALAGQPQHFERTLTKADGSIGYTWANYV 259

Query: 280 VRVLNSFGEAGIAIDVS-------KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
             + +    AG  + V+        E  + D       IL+N+   I   D    +   N
Sbjct: 260 PDMDSYGKVAGFFVLVTDVTPMKEAERQIRDAENRMRTILNNVMDGIITIDGKGIVISVN 319

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            + + L+      +        + E  RS++         T +     V +  E      
Sbjct: 320 PAAISLFGYSGEEVVGQNVKMLMPEPNRSSHDGYLARYQSTGESRAIGVGRELEGLT--- 376

Query: 393 HLPNGQTLHVIVTSNP---RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
              +G+   + +T       G  ++  +  ++T +  +     ++       I+  S+ +
Sbjct: 377 --KDGRVFPMELTITEVEIDGQRMFVGLVRDITERKSIA----SIQARYMAIIEASSDAI 430

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                DG +   NPA  +L+      +      R I         +          I  F
Sbjct: 431 MSKSLDGIVTSWNPAAEALFGYTAEEMIGTPMSRLIPPGREDEEAQILARIRRGEYIDHF 490

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
           +  R+   G +  +S      ++ P+ +             ++T+  +AE        A 
Sbjct: 491 ETFRQRKNGQVFPIS-----VTLSPIRDETGTLMGASKIARDITERKQAEEETRLARIAA 545

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A+  K+ F+ ++S+E+R+P+  IIG T L + +   +   KQ  Y+  I  ++  LL 
Sbjct: 546 EEANRTKSDFLANMSHEIRTPMNAIIGMTHLAQRT---NPTPKQKGYLTKIGNAAEALLG 602

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           ++NDILD + ++AG + L      L+D+L  +   +  K  +  + + +     +  + +
Sbjct: 603 IINDILDFSKIEAGKLDLESIPFSLDDVLGNLVDMVGIKAGQKGVEVVLAVAPDVPRTLI 662

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIPEDMCKS 737
            D  RL QI   + +NA+ F+ KG  +I      +    G  + SV++ G  +  +   +
Sbjct: 663 GDPLRLGQILINLANNAVKFTDKGEIIIRVVNAPDIPTAGRLMVSVRDTGIGMTSEQVSN 722

Query: 738 VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +F+ F         +  G GLGL+I +    + GG V + S     +T    
Sbjct: 723 LFHSFNQADTSITRKYGGTGLGLAISKQLCEMMGGTVCVESEPGKGSTFIFT 774


>gi|46202135|ref|ZP_00053708.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 663

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 121/630 (19%), Positives = 241/630 (38%), Gaps = 33/630 (5%)

Query: 189 SNHISVFKVLFDSLDFL---VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           +  +   + L ++L      V   D A  ++  N  Y +         +        + +
Sbjct: 24  AQTLDAQRQLLEALGNSRDGVALYDSANRLITCNDRYLQMLSPIKDSIRPGARFEDLMAE 83

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---IVR---VLNSFGEAGIAIDVSKEI 299
               ++M       K     ++    G++K      I       +  G+  I  D+++  
Sbjct: 84  LAEAEKMEDGWLARKLSGGGLTDATAGDDKFRDGQWITVNAYATSDGGQLRILRDITQRK 143

Query: 300 TVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                L  T   L      +   I   D+   +   N +   L+      +     +  +
Sbjct: 144 QAEIALEDTVSWLRGVMDTVVDGIVTIDETGTVLSFNPAAEHLFGWAAEQVVGRNVSMLM 203

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQTLHVIVTSNPRGGT-- 412
            +  + A+    +  + +    + +  +  E   +D  H P    + + +    +G    
Sbjct: 204 PDPHQGAHDGYIRAYFSSKSGKVGANGREVEGLRRDGTHFP----MELAIAHMHQGDMLT 259

Query: 413 -IWMFENLTVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            I +  +++ +   E                    ID++ +GVAVF  D  +   N +  
Sbjct: 260 FIGVIRDISERKRSEKALRDSTTRLSHQANRLQAIIDNMPQGVAVFASDDALIALNESAI 319

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD--LFAAIITSFDDERKSLQGTLELLS 522
            +    +  ++PGT   ++        +   G       A ++    ER  +       S
Sbjct: 320 RMLGLPKAEITPGTIDISLFMALLAANDTPPGHHSAQLTADLSESIRERPEMVFEHFTPS 379

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             ++E     +P    +L+F ++TD    E+ L E  +   + +  KN+F+ ++S+ELR+
Sbjct: 380 GLIMEVRSSSMPGGGLILSFTDITDRKHIEQTLREAKDEAERGNRTKNTFLANISHELRT 439

Query: 583 PLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           PL  IIGF++++K    G L       YV+ I  S   LL L+NDILD++  +AG+  L 
Sbjct: 440 PLNAIIGFSEMMKHEIFGPLEPASYRAYVDDIHESGMHLLELINDILDMSKAEAGMTDLM 499

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            + + + DL+    + +  +     I +       L + +AD +RL QI   + SNA+ F
Sbjct: 500 ETAVHVPDLIRAAIRLLNRRAENAAISLTEDLPPNLPTLLADERRLRQIILNLGSNAVKF 559

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLS 759
           +  G  V + A      F+  V + G  +  +  + V   FV        +  G GLGL 
Sbjct: 560 TDDGGAVTIGAKVTEAGFVIRVADTGIGMTPEDVQRVMEPFVQADTRLSRKYEGSGLGLP 619

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + ++ +  HGG +++ S     T +    P
Sbjct: 620 LAKALVIAHGGTLNLDSQPGRGTVVTVTFP 649



 Score = 91.5 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 102/310 (32%), Gaps = 34/310 (10%)

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
           ++   I +    +     LRIL       ++ +       L + +S  + + D++   + 
Sbjct: 115 RDGQWITVNAYATSDGGQLRIL------RDITQRKQAEIALEDTVSWLRGVMDTVVDGIV 168

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM----------ISSSA 257
             D+ G +L  N + +      G   ++ +G +  +   +  +              S  
Sbjct: 169 TIDETGTVLSFNPAAEHLF---GWAAEQVVGRNVSMLMPDPHQGAHDGYIRAYFSSKSGK 225

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGE----AGIAIDVSKEITVNDQLT------- 306
           +  N  E       G +   ++       G+     G+  D+S+       L        
Sbjct: 226 VGANGREVEGLRRDGTHFPMELAIAHMHQGDMLTFIGVIRDISERKRSEKALRDSTTRLS 285

Query: 307 ----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                   I+ N+   +A+F  +  L   N S + +  +  A +     +  L   L +A
Sbjct: 286 HQANRLQAIIDNMPQGVAVFASDDALIALNESAIRMLGLPKAEITPGTIDISLFMALLAA 345

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           N  P   +      ++    +           P+G  + V  +S P GG I  F ++T +
Sbjct: 346 NDTPPGHHSAQLTADLSESIRERPEMVFEHFTPSGLIMEVRSSSMPGGGLILSFTDITDR 405

Query: 423 VDLETKYNTL 432
             +E      
Sbjct: 406 KHIEQTLREA 415


>gi|20093164|ref|NP_619239.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19918507|gb|AAM07719.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 1028

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 103/383 (26%), Positives = 173/383 (45%), Gaps = 17/383 (4%)

Query: 416 FENLTVQVDL-ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              +  ++ L   K       +   ++ LSE V     + +I  +N A       +   +
Sbjct: 338 INRMLDRLRLNSDKVKAQEHEKKVILNSLSELVIFMDLELKIVWANRASLDYAGLKLENI 397

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              ++        S   +   G  L    + S ++E     G +      +    +  + 
Sbjct: 398 VGHSY-----EKLSPISDAVSGRALAQKALESGNEE----TGEVVTPDGKIWTIRMNLIK 448

Query: 535 NA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +        + T +++T   R+E  L +       A   K+ F+ ++S+ELR+PL +IIG
Sbjct: 449 DEDGKVTGFLQTGLDITAHRRSEEKLLQAKLEAEAASCTKSEFLANMSHELRTPLNSIIG 508

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+D+L     G LN KQ +YV  IS S   LL L+NDILDL+ V+AG M L+YS   ++ 
Sbjct: 509 FSDILIERVFGELNEKQLKYVNNISGSGKHLLGLINDILDLSKVEAGKMDLHYSEFTVDS 568

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +  EVK ++       ++ I  +     G   ADR RL+QI   ++SNA+ F+ +G  V 
Sbjct: 569 VFEEVKSTLFPLAQAKSLEINFVVGPDFGDIQADRSRLIQILYNLVSNAIKFTPEGGRVS 628

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           +   +     +FSV + G  I  +  K +F  F        R+  G GLGL++V+  +NL
Sbjct: 629 VYCKKSGSRALFSVTDTGIGISSEDQKKLFQPFTQIDSSSARQYCGTGLGLALVKKIVNL 688

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           H G + + S  E  +T    IP 
Sbjct: 689 HKGDIWVESELEKGSTFMFTIPL 711


>gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
 gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
          Length = 1075

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 128/650 (19%), Positives = 256/650 (39%), Gaps = 67/650 (10%)

Query: 179 AETTLKCKKLSNHISVF-KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           A++ LK +K  +   +  + + + L   +       DI++AN    +  E  G    + +
Sbjct: 175 AKSRLKMEKQLHEKDMLYRTMVEKLQDGLIITTPESDIIFANP---RMEELSGYKLSEML 231

Query: 238 GESR-KLFKEEIK-----KRMISSSALEKNFCETVSTLEHGN--NKSYKIV----RVLNS 285
                +LF  E K     +++        +  E     + G                   
Sbjct: 232 HRKTYELFIAEDKQVLLNEKLQGRREGRSDKYEIEQVRKDGTCWQSLVNATPYYNDANEM 291

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR-YLQFHNRSFVELWE 340
            G   +  D++ +     +L  + +    + +     + IF  +   +   N + VE + 
Sbjct: 292 IGIMALVTDITHQKNAEARLKKSEQDHRLLFNKNPHPMLIFATDNLQILAVNDTMVEKYG 351

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT----WHLPN 396
                 A     D                    W E+I  +  +    KD       L +
Sbjct: 352 YTKEDFAQMSLRDLC------------------WAEDIPCLEANLNQAKDVTRSRHCLKD 393

Query: 397 GQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           G  ++V ++      N +   + + +++T ++  E +           + ++  G+ +  
Sbjct: 394 GTLINVDISGRDILYNNQAARLVLIQDVTEKLKAENELQLTSSRLKALLQNMQAGILLED 453

Query: 452 PDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              ++ L+NP F  ++          G      A     ++  S   D F ++I      
Sbjct: 454 AQRKVALANPVFCDMFDVPVPPEELKGLDCAPFAELSKGFFTNS---DTFISVINDILTA 510

Query: 511 RKSLQGT-LELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKA 565
           R  + G  LEL+   V E   IP+ + +     +  + +V++  +A++ L +  +   ++
Sbjct: 511 RNIVLGEELELVDGRVYERDYIPVFSNEEYLGHLWQYRDVSNKKKAQKVLIQARKKAEES 570

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K  F+ ++S+E+R+PL  IIG   LL  +   SL  +Q +Y++ I  S+  LL ++N
Sbjct: 571 SLAKERFLANMSHEIRTPLNAIIGMQRLLSKT---SLEERQQRYLDAIGTSADNLLVIIN 627

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADR 684
           DILD++ ++AG ++L      L  L+  +  ++  K  E  I +    D  +    + D 
Sbjct: 628 DILDISKIEAGKLELENVGFDLCKLIRHLVFTLGYKAEEKGIGLYANIDDNMHPIVLGDS 687

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            RL QI   +L+NA+ F+  G  +I    ++A  D     F V + G  I  +  ++VF 
Sbjct: 688 VRLHQILLNLLNNAIKFTDVGKVIISTSLVEANPDTQTVCFEVSDTGRGIKAENIEAVFE 747

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F        R   G GLGL+I    + L GG ++++S     TT +  +
Sbjct: 748 SFTQEDASITRKFGGSGLGLAIGRQLVELFGGKLTVTSEYSKGTTFSFTL 797


>gi|288962975|ref|YP_003453269.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288915241|dbj|BAI76725.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1310

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 126/681 (18%), Positives = 239/681 (35%), Gaps = 83/681 (12%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKN-----T 226
           +  E+A       +L +   +  +  +   F  W+ D        W++  Y+        
Sbjct: 193 LRREVALRERAEAELRDRSRLLNLAEEVGQFGHWYIDFVTDTR-RWSDEVYRILGLPPQQ 251

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--- 283
           E   +   +A      L            +    +    V   + G    +    V    
Sbjct: 252 EPPTVELSRASYHPDDLPLLARMAERARRTGEGFSVEARVVRRDGGMRHVFVRASVECGA 311

Query: 284 --NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFDQNRYLQFHNRSFVELW 339
                G  G+  D++       +L    E+L     A    I+D               W
Sbjct: 312 DGRPAGLLGVVQDITDAKREEAELRSNRELLDLTVQATRDGIWD---------------W 356

Query: 340 EIDLAFLATNPSNDELL----EFLRSANKLPEQLNWKTWKENIFSVYKSS--------ET 387
            ++   +  +P+  E L    + L ++ ++   L ++  +       ++         E 
Sbjct: 357 NLETGGIWFSPTWKEQLGYRDDELENSLEMWAGLIFEEDRFTALETVRAYNAGLIPNFEA 416

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGG------TIWMFENLTVQVDLETKYNTLVKVQGETID 441
            +   H        +    + R         +    ++T +   E +     +   + I+
Sbjct: 417 VQRFRHKRGHTVYILSRAIHIRDAAGRVVRMVGAHTDITREKLTEEELRLAKQTLDDAIE 476

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC---SRYYNESDGWD 498
            + EG+A F  D R+ L N  +R          +PG     I         +    DG  
Sbjct: 477 AVPEGLAYFDADDRLILCNERYREAHPLTAPLFTPGRPFEEILRAAVANGEFAGNPDGPS 536

Query: 499 LFAAIITSFDDERKS-LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             A I       R        EL     +  +     +   + T  ++T+  R E  L  
Sbjct: 537 DEAWIQAELAQHRNPGAPFERELPDGRWIVVAENRTSSGSLVCTRTDITERKRFEAELQR 596

Query: 558 KNEALRKADE---------------------IKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +   +    E                      K+ F+  +S+E+R+P+  I+G T+LL  
Sbjct: 597 QAADMCALAEGLDAAREEADALRARAEAATQAKSEFLAAMSHEIRTPMNGIMGMTELLFD 656

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L  +Q Q+ + I +SS  LL ++NDILD++ ++AG + +        DL+  V +
Sbjct: 657 T---PLTEEQRQFAQAIRSSSNALLTIINDILDISKLEAGRVTIETLPFDPADLVEGVVE 713

Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +  + HE  I I    D  L  + + D  R+ QI   ++ NA+ F+ +GS  V L+A  
Sbjct: 714 LLTPRAHEKGIEIGFYIDPPLRRTLLGDPTRIRQILVNLVGNAVKFTDQGSVAVELEARE 773

Query: 715 -DNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
             +   +   +V + G  IP +   ++FN+F        R   G GLGL+I      L G
Sbjct: 774 ATDAHLVLRMTVTDTGIGIPAEAMPTLFNKFQQVDGSITRKFGGTGLGLAICRQLSELMG 833

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +++ S     +     +P 
Sbjct: 834 GSIAVESRLGSGSRFLVDLPL 854



 Score =  101 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/426 (14%), Positives = 144/426 (33%), Gaps = 33/426 (7%)

Query: 43  LLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQR 102
           + +R+R     +       L+E   Q   ++     +      W   DE   I+G   Q+
Sbjct: 197 VALRERAEAELRDRSRLLNLAEEVGQFGHWYIDFVTDTRR---WS--DEVYRILGLPPQQ 251

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAET--QNDCAIKIEGRVS 160
                  +                L++  E+ R+ G+ F + A    ++     +  R S
Sbjct: 252 EPPTVELSRASY-----HPDDLPLLARMAERARRTGEGFSVEARVVRRDGGMRHVFVRAS 306

Query: 161 GSC-AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
             C A  R   L G+  ++ +   +  +L ++  +  +   +    +W  +     +W +
Sbjct: 307 VECGADGRPAGLLGVVQDITDAKREEAELRSNRELLDLTVQATRDGIWDWNLETGGIWFS 366

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNN 274
            ++K+         + ++     L  EE +   + +     + L  NF           +
Sbjct: 367 PTWKEQLGYRDDELENSLEMWAGLIFEEDRFTALETVRAYNAGLIPNFEAVQRFRHKRGH 426

Query: 275 KSYKIVRVLNSFGEAGIAI-------DVSKEITVNDQLTHTYEILHN----LTVAIAIFD 323
             Y + R ++    AG  +       D+++E    ++L    + L +    +   +A FD
Sbjct: 427 TVYILSRAIHIRDAAGRVVRMVGAHTDITREKLTEEELRLAKQTLDDAIEAVPEGLAYFD 486

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL---PEQLNWKTWKENIFS 380
            +  L   N  + E   +           +E+L    +  +    P+  + + W +   +
Sbjct: 487 ADDRLILCNERYREAHPLTAPLFTPGRPFEEILRAAVANGEFAGNPDGPSDEAWIQAELA 546

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            +++     +   LP+G+ + V       G  +    ++T +   E +            
Sbjct: 547 QHRNPGAPFE-RELPDGRWIVVAENRTSSGSLVCTRTDITERKRFEAELQRQAADMCALA 605

Query: 441 DHLSEG 446
           + L   
Sbjct: 606 EGLDAA 611


>gi|291566270|dbj|BAI88542.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 728

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 130/561 (23%), Positives = 229/561 (40%), Gaps = 83/561 (14%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL+ +  AIA+FD +  L   N     +W I +  LA  PS DE+   + ++ KL  +  
Sbjct: 13  ILNEIDQAIALFDSSDRLILFNPQLASIWGISVDQLAAQPSLDEICAEI-TSQKLWSKPE 71

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           W+  ++ +    +   +     H  N   L V   + P G  +  F ++T   + +   N
Sbjct: 72  WEHLRQTLRDSVRGEISFCIQQH--NQIYLEVHSHTTPSGRRLLTFRDITDYRNTQLSLN 129

Query: 431 TLVKVQGETI---------DHLSEGVAVFGPDGRIKLSNPAF------------------ 463
           T V+     +         D+L + +A F  +  +  +N AF                  
Sbjct: 130 TEVRRLRFLLGLNERLQDSDNL-DKIAQFALNYLVHTTNAAFGDVKVILGEGENRITGML 188

Query: 464 -------------RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                               +  LS G               E      +A    +F   
Sbjct: 189 GNQISGQFIATYGEPAVAEMKALLSQGIPYGEGLLWDVVRTGEPIFVQDYANHPKAFSPF 248

Query: 511 RKSLQGTL----------ELLSDSVLEYS----IIPLPNAQTMLTFVNV----TDSVRAE 552
           R    G L          E++    LE      +   P    +           +  +A+
Sbjct: 249 RHPGIGQLGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAACRTLGTAIERAQAQ 308

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L + NE L +A ++K+ F+  +S+ELR+PL +++GF DLLK    G+LNS+Q   V++
Sbjct: 309 ENLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQVQF 368

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L+NDILDL+ +++G  +LN   + +++L +E  + +  +  +  + + + 
Sbjct: 369 IEKSGLHLLQLINDILDLSKIESGKTELNLELVNIHELCSECLKMVQPRADKKCLALSLE 428

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGD--------- 718
           SD ++   + D++R+ QI   +LSNA+ F+ +G  V L       ++ +GD         
Sbjct: 429 SDYRITQALLDKRRVRQIIINLLSNAIKFTPEGGKVRLSGHLAYGSQIDGDYRPDCSPIN 488

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
                    V+++G  IP+D    +F  F         +  G GLGL + +    LHGG 
Sbjct: 489 DSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGT 548

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           VS+ S     +     +P  E
Sbjct: 549 VSLQSQVNQGSRFRVWLPLTE 569



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 5/136 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA--T 486
              L   Q   ++ + + +A+F    R+ L NP   S+W    ++L+    +  I A  T
Sbjct: 3   IQQLKDEQILILNEIDQAIALFDSSDRLILFNPQLASIWGISVDQLAAQPSLDEICAEIT 62

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             + +++ +   L   +    D  R  +   ++  +   LE      P+ + +LTF ++T
Sbjct: 63  SQKLWSKPEWEHLRQTLR---DSVRGEISFCIQQHNQIYLEVHSHTTPSGRRLLTFRDIT 119

Query: 547 DSVRAERALTEKNEAL 562
           D    + +L  +   L
Sbjct: 120 DYRNTQLSLNTEVRRL 135


>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1135

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 98/508 (19%), Positives = 194/508 (38%), Gaps = 28/508 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E  + +  +    ++  L  A+   D +  + F NR   E+       +      D   
Sbjct: 157 AEQKLVESESFYRSLVETLPYAMFRKDLHGRVTFANRKLCEILGSPPNEVVGKTDYDFFP 216

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT--LHVIVTSNPRG---- 410
             L    +           +   +  ++     + +  P+G+    HV+      G    
Sbjct: 217 TDLADKYR---------ADDRYVTETRAQFETIEEFVTPSGEVHYTHVMKNPVYDGRGNC 267

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G   +F ++T +   E   +    +    +  + + +      GR    N A  +    
Sbjct: 268 VGIQGIFSDVTDRKRTEIALDQERDLLNNLMKSIPDNIYFKDVRGRYLRINQAKAAASGL 327

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLE 527
            +  L+ G    +  +         D   +    +     E + +   G +  +S + L 
Sbjct: 328 SDPSLAIGKSDTDFFSAEHAAIARKDEEYVMQTRLPLIGKEERVVWSDGHIRWMSTTKLP 387

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                     T     ++T    AE+AL E  +A   A+  K+ F+ ++S+E+R+PL  I
Sbjct: 388 LISPAGDVIGTYGVSRDITPMKLAEQALREAKDAAEAANRAKSDFLANMSHEIRTPLNAI 447

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T+L+  +    L   Q  Y+  +  S   LL ++NDILD + ++AG + ++     L
Sbjct: 448 IGMTELVMDT---DLKVAQRDYLRMVLESGESLLGIINDILDFSKIEAGRLHVDEQPFRL 504

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
            D L +  +S++ + H   + +       +      D  R+ Q+   +L NA+ F+ +G 
Sbjct: 505 RDSLGDTMKSLSNRAHRKKLELAFHVSPDVPDEVRGDAVRVRQVIINLLGNALKFTERGE 564

Query: 707 TVI-LKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            V+ +       +     F V++ G  I +D  +S+F  F        RR  G GLGL+I
Sbjct: 565 VVLDVSVESRTAEQVTLHFKVQDTGIGIAKDKFESIFEAFEQADSSTTRRYGGTGLGLAI 624

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
               + L  G + + S     +T +  +
Sbjct: 625 SARLVELMQGKIWVESEVGQGSTFHFTL 652



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 91/289 (31%), Gaps = 37/289 (12%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           SE+ +     +KL    S ++ L ++L + ++ +D  G + +AN   +K  E  G    +
Sbjct: 149 SEVLKRQYAEQKLVESESFYRSLVETLPYAMFRKDLHGRVTFAN---RKLCEILGSPPNE 205

Query: 236 AIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLE-----HGNNKSYKIVRVL------ 283
            +G++    F  ++  +  +             T+E      G      +++        
Sbjct: 206 VVGKTDYDFFPTDLADKYRADDRYVTETRAQFETIEEFVTPSGEVHYTHVMKNPVYDGRG 265

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELW 339
           N  G  GI  DV+        L    ++L+NL       I   D        N++     
Sbjct: 266 NCVGIQGIFSDVTDRKRTEIALDQERDLLNNLMKSIPDNIYFKDVRGRYLRINQAKAAAS 325

Query: 340 EIDLAFLATNPSNDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            +    LA   S+ +    E    A K  E +           +    +  +  W   +G
Sbjct: 326 GLSDPSLAIGKSDTDFFSAEHAAIARKDEEYVMQ-------TRLPLIGKEERVVWS--DG 376

Query: 398 QTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               +  T  P         GT  +  ++T     E             
Sbjct: 377 HIRWMSTTKLPLISPAGDVIGTYGVSRDITPMKLAEQALREAKDAAEAA 425


>gi|163795303|ref|ZP_02189270.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159179289|gb|EDP63820.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 664

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 119/589 (20%), Positives = 231/589 (39%), Gaps = 55/589 (9%)

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
              R++            ++    G      I     + G A  A DV+       ++  
Sbjct: 85  AADRLLRVLDSGIPDAFDLALRIDGQPSVMSIKVTAFAGGLAIYARDVTDRRADEIRMRE 144

Query: 308 TY-----------EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                        + L       A+FD +  L   N+++  +  +  A L      ++LL
Sbjct: 145 LEQRARRAERRLIDALDASPDPFAVFDSSSRLVLCNQTWASMSGLGDARLLPGRRFEDLL 204

Query: 357 EFLRSANKLPEQLNW---KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
             + S    P  + +   + + +     +++++         +G+   +       GG++
Sbjct: 205 RQV-SIGADPANVGFDTIEAFIQWRLVRHRNADGEPIQITQKDGRVFLIRERRMDDGGSV 263

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +   +T             ++  +T+D   + VA+F  + R+ + N +F         R
Sbjct: 264 NVATEITE-------LERSRRLLRDTVDATEQAVALFDREERLVIWNQSFELFSPAVTFR 316

Query: 474 LSPGTHIRNI------AATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSV- 525
           +        +      A+T           +  A    SF + ER+S  G + L+ + + 
Sbjct: 317 VGMTLEETVLTVTKTSASTMHIDGRPVTAAERLALPRGSFTELERRSADGRIFLIRERLT 376

Query: 526 ---------------------LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
                                LE  +  L  A+            R    LT + E    
Sbjct: 377 ADGGVVITATDATDLKVKEQTLEAQVQALHAARADAEQHAEH-LARMTDMLTREKERAEA 435

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNL 623
           A   K+ F+ ++S+ELR+PL  ++GF+++LKT   G L +K+  +Y + I AS   LL+L
Sbjct: 436 ASRTKSQFLANMSHELRTPLNAVLGFSEILKTEAFGPLGAKRYKEYADDIHASGHHLLSL 495

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDILD++ ++AG  +L+     L  ++  V + +  +  E ++ ++V           D
Sbjct: 496 INDILDMSKIEAGKYRLHKEKEALASIIGAVGRMMRGRAAEADLVLQVELPDPALVVNVD 555

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            + + Q+   +L+NA+ F+  G  V L     +      V +NG  IPE+    +   F 
Sbjct: 556 VRAIKQVLINLLANAITFTPAGGRVRLGVRVHDDGVAMYVADNGIGIPEEELPRLLRPFE 615

Query: 744 S--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               A R  R G GLGL++  + + LH G +++ S     TT+  R+P+
Sbjct: 616 QIDGADRRGREGTGLGLALSNALVELHSGTLTLESQIGIGTTVTVRLPA 664



 Score = 77.7 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/382 (11%), Positives = 110/382 (28%), Gaps = 37/382 (9%)

Query: 84  IVWDGKDETPE-IIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFD 142
           +VW   +   E ++G+    +        + +   W       +L +  +       +FD
Sbjct: 48  LVWTVVNAGAEQLLGKPSDTLIGTSFLPAITA---WPIPGAADRLLRVLDS--GIPDAFD 102

Query: 143 LVAETQNDCAIKIEGRVS--GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           L        ++      +  G  A      +    ++        ++            D
Sbjct: 103 LALRIDGQPSVMSIKVTAFAGGLAIY-ARDVTDRRADEIRMRELEQRARRAERRLIDALD 161

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVF----------------QKAIGESRKLF 244
           +        D +  ++  N ++   +                                  
Sbjct: 162 ASPDPFAVFDSSSRLVLCNQTWASMSGLGDARLLPGRRFEDLLRQVSIGADPANVGFDTI 221

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
           +  I+ R++     +    E +   +          R ++  G   +A ++++       
Sbjct: 222 EAFIQWRLVRHRNADG---EPIQITQKDGRVFLIRERRMDDGGSVNVATEITELERSRRL 278

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L    + +     A+A+FD+   L   N+SF EL+   + F       + +L   +++  
Sbjct: 279 L---RDTVDATEQAVALFDREERLVIWNQSF-ELFSPAVTFRVGMTLEETVLTVTKTSAS 334

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV--- 421
                          ++ + S T  +     +G+   +       GG +    + T    
Sbjct: 335 TMHIDGRPVTAAERLALPRGSFTELERRS-ADGRIFLIRERLTADGGVVITATDATDLKV 393

Query: 422 -QVDLETKYNTLVKVQGETIDH 442
            +  LE +   L   + +   H
Sbjct: 394 KEQTLEAQVQALHAARADAEQH 415


>gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1236

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/509 (20%), Positives = 201/509 (39%), Gaps = 29/509 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
                  +      +L ++  AI   D+       N++   +     + +    S D   
Sbjct: 449 ATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSEDLTS 508

Query: 354 -ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            E+   +R+        + +  K+     Y+          L +   L          G 
Sbjct: 509 PEMGIRIRAE-------DEQILKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQGL 561

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I ++ ++T + +   +     +     +D + +G+  +  D    + NP++ S+   + N
Sbjct: 562 IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYYSMLGYKPN 621

Query: 473 RLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL----QGTLELLSDSVLE 527
                   I  +     R   E          + +++ E + L         L    V+E
Sbjct: 622 EFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDAYEIEFRILGKNGSYHWVLSRGRVVE 681

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           ++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  I
Sbjct: 682 FTADGQP-KRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAI 740

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG   L + +   SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L
Sbjct: 741 IGMLQLAQRT---SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPL 797

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
           + +L+      A K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G 
Sbjct: 798 DKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGE 857

Query: 707 TVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            + L               F V++ G  I +D  + +F+ F        R   G GLGLS
Sbjct: 858 -IELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLS 916

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +  +++ GG + + S     +T +  I
Sbjct: 917 ISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKDATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 492 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK-----TWKENIFSVYKSSE 386
           N S+  +            S  + L       ++ E  N          E  F +   + 
Sbjct: 609 NPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDAYEIEFRILGKNG 668

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           ++   W L  G+ +       P+   +   +++T     E     L   Q   + +L
Sbjct: 669 SYH--WVLSRGRVVEFTADGQPK-RMVGTHKDITRHKSNEVAL--LEAKQDAELANL 720



 Score = 41.1 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 15/206 (7%)

Query: 360 RSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE     W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 394 QEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 447

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 448 DATERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 500

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 501 LSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQG 560

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYH 586


>gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1236

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/509 (20%), Positives = 201/509 (39%), Gaps = 29/509 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
                  +      +L ++  AI   D+       N++   +     + +    S D   
Sbjct: 449 ATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSEDLTS 508

Query: 354 -ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            E+   +R+        + +  K+     Y+          L +   L          G 
Sbjct: 509 PEMGIRIRAE-------DEQILKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQGL 561

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I ++ ++T + +   +     +     +D + +G+  +  D    + NP++ S+   + N
Sbjct: 562 IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYYSMLGYKPN 621

Query: 473 RLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL----QGTLELLSDSVLE 527
                   I  +     R   E          + +++ E + L         L    V+E
Sbjct: 622 EFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDAYEIEFRILGKNGSYHWVLSRGRVVE 681

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           ++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  I
Sbjct: 682 FTADGQP-KRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAI 740

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG   L + +   SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L
Sbjct: 741 IGMLQLAQRT---SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPL 797

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
           + +L+      A K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G 
Sbjct: 798 DKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGE 857

Query: 707 TVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            + L               F V++ G  I +D  + +F+ F        R   G GLGLS
Sbjct: 858 -IELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLS 916

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +  +++ GG + + S     +T +  I
Sbjct: 917 ISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKDATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 492 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK-----TWKENIFSVYKSSE 386
           N S+  +            S  + L       ++ E  N          E  F +   + 
Sbjct: 609 NPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDAYEIEFRILGKNG 668

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           ++   W L  G+ +       P+   +   +++T     E     L   Q   + +L
Sbjct: 669 SYH--WVLSRGRVVEFTADGQPK-RMVGTHKDITRHKSNEVAL--LEAKQDAELANL 720



 Score = 41.1 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 15/206 (7%)

Query: 360 RSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE     W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 394 QEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 447

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 448 DATERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 500

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 501 LSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQG 560

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYH 586


>gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1236

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/509 (20%), Positives = 201/509 (39%), Gaps = 29/509 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
                  +      +L ++  AI   D+       N++   +     + +    S D   
Sbjct: 449 ATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSEDLTS 508

Query: 354 -ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            E+   +R+        + +  K+     Y+          L +   L          G 
Sbjct: 509 PEMGIRIRAE-------DEQILKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQGL 561

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I ++ ++T + +   +     +     +D + +G+  +  D    + NP++ S+   + N
Sbjct: 562 IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYYSMLGYKPN 621

Query: 473 RLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL----QGTLELLSDSVLE 527
                   I  +     R   E          + +++ E + L         L    V+E
Sbjct: 622 EFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNGSYHWVLSRGRVVE 681

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           ++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  I
Sbjct: 682 FTADGQP-KRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAI 740

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG   L + +   SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L
Sbjct: 741 IGMLQLAQRT---SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPL 797

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
           + +L+      A K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G 
Sbjct: 798 DKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGE 857

Query: 707 TVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            + L               F V++ G  I +D  + +F+ F        R   G GLGLS
Sbjct: 858 -IELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLS 916

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +  +++ GG + + S     +T +  I
Sbjct: 917 ISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKDATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 492 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK-----TWKENIFSVYKSSE 386
           N S+  +            S  + L       ++ E  N          E  F +   + 
Sbjct: 609 NPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNG 668

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           ++   W L  G+ +       P+   +   +++T     E     L   Q   + +L
Sbjct: 669 SYH--WVLSRGRVVEFTADGQPK-RMVGTHKDITRHKSNEVAL--LEAKQDAELANL 720



 Score = 41.1 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 15/206 (7%)

Query: 360 RSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE     W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 394 QEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 447

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 448 DATERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 500

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 501 LSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQG 560

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYH 586


>gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG6]
 gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG6]
          Length = 906

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 129/641 (20%), Positives = 241/641 (37%), Gaps = 58/641 (9%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-K 242
           + +  S+  SV   +       +   D  G I W N  + + T   G V    +G     
Sbjct: 10  QPQGSSHDASVLTRIAQHSSNAMILTDNQGRIEWVNTGFTRLT---GYVLADVVGHKPGD 66

Query: 243 LF-----KEEIKKRMISSSALEKNFCETVSTLEH-GNNKS--------YKIVRVLNSFGE 288
           L       +   +RM  +    + F E V      G            +   R L+ F  
Sbjct: 67  LLQGPGTDKATVERMSLAIRQGQGFSEIVLNYNKIGLPYWISLQVSPIFDAQRQLSHF-- 124

Query: 289 AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            G+   +S++  +             +   + V + + DQ           +EL  +   
Sbjct: 125 LGVVTPISEQRYLAHLFWQNETYLRMVFQTMPVILFVLDQEGTFILGEGKGLELLGLKPG 184

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
             A       +        ++ + +      E+   + +  +   +T   P      V  
Sbjct: 185 MFAGQ----SVFSLYADQPQIIQSVRRALAGEDFAILNQYKDFSFETRFHP---MYDVQG 237

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G I +  +++ ++                I +L  GV V   D R+ L N  F 
Sbjct: 238 QVT---GVIGVAFDISPRLQATAASQNANSRLSTLIANLQAGVLVEDDDCRLTLVNQTFC 294

Query: 465 SLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           +++          G    ++A   +     S+    F        ++R+ + G +  ++D
Sbjct: 295 TIFGLSMPPDALIGMDCYDVARMIAPSLEHSES---FFTHFQQILEQRQPVTGYMVRMAD 351

Query: 524 -SVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              LE   +P+         +  + +V++ VR    L    EA   A   K+SF+  +S+
Sbjct: 352 GRSLECDFVPVFEDDGYHGHLWLYRDVSERVRGTAELVRAKEAAEAATMAKSSFLATMSH 411

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  +IG T L+  +    L  +Q QY E I  S  +LL L+N+ILD + +++G M
Sbjct: 412 EIRTPMNAVIGMTTLMLDT---DLTREQRQYAETIRTSGDMLLALINNILDFSKIESGHM 468

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
           +L      L+  + EV + +  K  E  I +  +  G++ + +  D  R+ QI   ++SN
Sbjct: 469 ELEQQPFSLHACIEEVNELLGPKAAEKGIVLTGMVSGQVPAMISGDSTRVRQILVNLISN 528

Query: 698 AMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           A+ F++ G  V ++A+    +           +V + G  IPED    +F  F       
Sbjct: 529 AIKFTNVGE-VTVRASARPDEALSGEHLIITITVADTGIGIPEDRMDRLFRPFSQIDAST 587

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL+I      L GG +++ S     ++     
Sbjct: 588 TRRFGGTGLGLAISRRLSELMGGSITVQSKVGVGSSFRVTF 628


>gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 849

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 142/815 (17%), Positives = 291/815 (35%), Gaps = 72/815 (8%)

Query: 25  AVFGTIAGMLLTTIIPIILLIRQ----RNSLAKKVNETYSFLSE-ICDQLSKYHSLLTEN 79
                IA  L+   + ++ L ++    R         T +F++E +  +LS+    L   
Sbjct: 32  TTLAVIAFSLVFGCVILVKLHQEWTAARAEAEASQARTAAFIAERVSGRLSEVRGALAMA 91

Query: 80  NCLTIVWDGKDETPEIIGQLHQRIDIP-QTDTDLLSFENWLKFHHYIKLSKATEKLRKEG 138
                V             L   I+ P      LL+ +  L            + LR+  
Sbjct: 92  ASQLEVMSPASLDAGAQAGLDNLIEAPWVDAAALLTPDGRLIASG----EADPDALREAA 147

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
            +  L          +    V  + A L   S+  + + L    L  +   + +++    
Sbjct: 148 NAALLSTSGLAARPGQTPSLVITAPAPLADGSVGALIASLTPQALLPRWNRDEVAML--- 204

Query: 199 FDSLDFLVWHRDQAGDILWANI--------SYKKNTETEGIVFQKAIGESRKLFKE---E 247
                      D  G +L  N            +    +     +       +      E
Sbjct: 205 ----------TDAEGRLLALNPDTPFTGAPFAAERLGLDPEAVSEMSRNGGAMRGAHLGE 254

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQLT 306
             + + +++             +  + +++    + +               I + +Q+ 
Sbjct: 255 DARILGAAAINGAPLQALSLGPDGIDRQAWNSTLLFHLLLFLAPLGTAGALSIVLRNQMG 314

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVE---LWEIDLAFLATNPSNDELLEFLR-SA 362
              +    L       D    L             W++D   +    S  +L+   R  +
Sbjct: 315 RLGDTQARLH------DSEGRLHLAIEGARCGVWDWDLDTDEVVLTDSFAQLIGRARGES 368

Query: 363 NKLPEQL------NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWM 415
              PE L      +    +  +     + +   +         L +     P     I +
Sbjct: 369 LSGPELLLLLGKEDRPKVRAALRGAANAQDVDLEVRAAGLPVWLQLRGRLLPHTRRIIGV 428

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T +   + +           ++ +SE   ++   GR+ L N  FR  +   E  L 
Sbjct: 429 AIDITERKGAQARVAAAESRLRAALESMSESFVLWDARGRLVLWNRKFRDFFGFNEPDLR 488

Query: 476 PGTHIRNIAATCSRYYNE----SDGWDLFAAIITSFD----DERKSLQGTLELLSDSVL- 526
            G+    + A  +R         DG D +   +         ER++  G L  +   +  
Sbjct: 489 IGSSYEQVEAAAARAIKAAHASEDGQDDYDLELNDGRWIHYAERRTADGGLVSVGADITA 548

Query: 527 ---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA----LRKADEIKNSFVQHVSYE 579
              +   +   + +   T  N+  S    + L    E       +A+  K+ F+ ++S+E
Sbjct: 549 LKDQQRALKDNDREMRRTVENLRRSQERVQELAANYEQEKIRAEEANRSKSEFLANMSHE 608

Query: 580 LRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           LR+PL  I GF++++     G L + +   YV  I +S   LL+L+NDILD++ ++AG M
Sbjct: 609 LRTPLNAINGFSEIMAGEMFGPLGHERYQDYVRDILSSGQHLLSLINDILDMSKIEAGKM 668

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L    ++  +++ +  + +  +  E +I + V    +L    AD + L Q+   ++SNA
Sbjct: 669 QLQPEPLMPAEVIEQCVRIMRARAEEKSIELTVEG-SELPEITADPRALKQVILNLMSNA 727

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGL 756
           + F+ +G  V L+  +     +  V + G  I ED  + V   F    + H  + +G GL
Sbjct: 728 VKFTPEGGKVKLRGFQAADGVVLQVSDTGIGISEDDLQRVGRPFEQIESQHSKKHQGSGL 787

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL++ +S I +HGG + I S     TT++  +P++
Sbjct: 788 GLALSKSLIEMHGGALRIDSRLGEGTTVSFTLPAE 822


>gi|332701935|ref|ZP_08422023.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1232

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 130/726 (17%), Positives = 250/726 (34%), Gaps = 86/726 (11%)

Query: 120  KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
                   L  +          F L++  +           +   AFL      G  + L 
Sbjct: 374  HPRLAGLLGASIAHDAGSFCGFLLLSHKREGEF------TAEDEAFL------GQLAALT 421

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLV----WHRDQAGDILWANIS------YKKNTETE 229
               L+               D+    +       D    I   N +      Y       
Sbjct: 422  SLGLRHLSARAEAEQRARQLDAAIEAMAEGLIIFDTDKSIQSINSAGKRLLGYTDENRDM 481

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN-NKSYKIVRVLNSF-- 286
                + A  + R L  E   +    + AL          L      +   ++   +    
Sbjct: 482  PFAERLAKYKVRPLVGEIDIENTPIAKALRGEALRKDEFLIEPEPGRQLHLMASASPIRS 541

Query: 287  ------GEAGIAIDVSKEITVND-----------QLTHTYEILHNLTVAIAIFDQNRYLQ 329
                  G   +  D+++   +             +      ++ N  V I + D+   L 
Sbjct: 542  RQGEVTGAVAVFQDITESKKLERDRENLIAALQVERARLKALIDNALVGIVLLDKKARLV 601

Query: 330  FHNRSFVELWEIDLAFLATNPSNDEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              N +   +  + L      P      LE L       E L  +     +       E H
Sbjct: 602  MANPAAEAILGVPLT-----PGMRHFALEKLDLRQPDGEPLPIQAL--PVVRAALGGEVH 654

Query: 389  KDTW---HLPNGQ----TLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVK 434
            K        P+G+     +H++ ++ P         G + +FE++T +   E       +
Sbjct: 655  KSVELSAARPDGRENGGRIHLLASAMPVRNRQGKLKGAVGVFEDVTERKRAEEALRESEE 714

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            +  +      E + +   DGR    N AF  L+    + +  G   + I    +    E 
Sbjct: 715  MFHKAFVMSPEMLTITTLDGRYLDVNEAFSRLFGYSRDEV-MGRRSQEIGHWLTPELREC 773

Query: 495  DGWDL-FAAIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                +     + + + E ++  G     LLS  V+     P      +    ++T+ +R 
Sbjct: 774  FVRQIQRGGRVQNMEVEFRTKDGDPCTLLLSADVVRIGGKP----CILTVGADITERIRM 829

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E  +    E    A+  K+ F+ ++S+E+R+P+  ++G  DL   S +  L ++  +Y  
Sbjct: 830  EGEMRRAKEQAEIANRAKSDFLANMSHEIRTPMNGVMGMIDL---SLMQKLPTRVREYQI 886

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                S+  LL+++ DILDL+ ++AG M+L      + DL+    + +A    +  +++  
Sbjct: 887  MAKKSADHLLSIIGDILDLSKIEAGRMELTEDIFDVRDLVEGTVRPLALTAADKGLKLLH 946

Query: 672  ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDNGDFIFSV 723
              D  +      D  RL Q+ + ++SNA+ F+ KG  V++          RD    +FSV
Sbjct: 947  AVDADIPPLLCGDPVRLRQVLANLVSNAVKFTHKG-RVLVNVERTGHDLPRDEVRLLFSV 1005

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G  IP +    +F  F         +  G GLGL+I +  + + GGH+ + S     
Sbjct: 1006 SDTGIGIPREKLSLIFESFSQAEEATHARYGGTGLGLAISKRLVEMMGGHIGVESVMGKG 1065

Query: 782  TTINCR 787
            +     
Sbjct: 1066 SRFFFT 1071



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/331 (10%), Positives = 93/331 (28%), Gaps = 40/331 (12%)

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAI-----------GESRKLFKEEIKKRM 252
             VW  D  G++L  N +  KN E       + +            + R++  EE+    
Sbjct: 40  EAVWLIDMDGNLLLLNKAAIKNMEQLASEMPRNMPDLLRALDVRTPDGRRVPPEELPIMQ 99

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLT 306
                +++     V  +        ++             G   +A D++        + 
Sbjct: 100 ALHGEVDRGRAFLVKAVSDTE-LFLEVSAAPLLGPQGEVTGALAVARDMTTLRRTARFME 158

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
                       +   + +  LQ+ N +        + FL    ++            +P
Sbjct: 159 PQVRFTEENPNPVLRVNASGILQYANTA-------SVPFLNALRTDR--------GEVVP 203

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDL 425
           E L     +  +    +  E  +      NG+T    ++     G +  +  ++T +  +
Sbjct: 204 EPL-----RGAMLRCLEHGECGELELA-ANGRTYIFSLSPVRGDGYVNFYGLDITGRKQI 257

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +    +  +   +    + ++    +  ++      R +   +            +  
Sbjct: 258 EERLTQQMAHREVLLRASRDMLSETNRESLLRRVLDLAREVAGADMALAGHELRQGLVTV 317

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
               +            I    D+  + L G
Sbjct: 318 DVFSHAQGIPPCGAPREIPEGRDNIMERLMG 348



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 37/228 (16%)

Query: 90  DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
            E P  +  L + +D+   D         +       + +A       G++F + A +  
Sbjct: 67  SEMPRNMPDLLRALDVRTPD------GRRVPPEELPIM-QALHGEVDRGRAFLVKAVSDT 119

Query: 150 DCAIKI--------EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
           +  +++        +G V+G+ A  R   +  +         + +             + 
Sbjct: 120 ELFLEVSAAPLLGPQGEVTGALAVAR--DMTTLRRTARFMEPQVR-----------FTEE 166

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
               V   + +G + +AN +             + + E           R      LE  
Sbjct: 167 NPNPVLRVNASGILQYANTASVPFLNALRTDRGEVVPEPL---------RGAMLRCLEHG 217

Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
            C  +    +G    + +  V          +D++    + ++LT   
Sbjct: 218 ECGELELAANGRTYIFSLSPVRGDGYVNFYGLDITGRKQIEERLTQQM 265


>gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1090

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 131/666 (19%), Positives = 244/666 (36%), Gaps = 54/666 (8%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           S S AF+ +     I   +     +   L      ++ L ++   ++   D +G I + N
Sbjct: 288 SWSVAFILMTMASAIGGFIGRFKAESA-LRESEEKYRELVETSSSVIIRVDTSGAIRFIN 346

Query: 220 ISYKKNTE-----------TEGIVFQKAIG-----------ESRKLFKEEIKKRMISSSA 257
                              TE I     IG           E+ +     I + + S+  
Sbjct: 347 KFGLHFFGYNEEDILGRNVTETIFPPGGIGCNLKAIIGHIRENPEECSTHIAENIRSNG- 405

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKE-----ITVNDQLTHTYEIL 312
            E  +      L        ++V VL    +       S+E       + +   +   +L
Sbjct: 406 -ELVWIAWAHRLVQNERG--EVVEVLCIGNDITEKKRSSEELKRVAADLRETRDYLDNLL 462

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN--KLPEQLN 370
            +    I ++D N  +   N +F  L       +          +  R+ +   +   L+
Sbjct: 463 SHANAPIIVWDPNFCITRFNHAFERLTGWRADEVLGRSLGILFPDESRTESFAYIERTLS 522

Query: 371 WKTWKE-NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
            ++W    I   +++ E     W+  N               TI   +++T +   E + 
Sbjct: 523 GESWNAVEIPICHQNGEVRTVLWNSAN----IYDEAGRRVIATIAQGQDITERKMAEER- 577

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              V  Q   +D +   V     DGRI   N    SL++ +   +   +    I     +
Sbjct: 578 ---VAFQASLLDQVRNAVIATDFDGRIIYWNRFAESLYQWKAEEVLGASIKDTILPPEMK 634

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           Y  E    ++ A      +   K   G+    S                +    ++T+  
Sbjct: 635 YNVEMVTKEILAKGYLECEYLVKRKDGSRFPASYIFSTICDNRQRRIGIISVSTDLTERK 694

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ L +  E    A + K+ F+ ++S+E+R+P+  +IGFT LL  + + S+   Q  Y
Sbjct: 695 KVEQDLRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFTSLLLNTNIDSV---QRDY 751

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I +S   LL +++DILD + ++ G+M+L    I L + L      +A       + +
Sbjct: 752 IETIHSSGDSLLKVISDILDFSKIEGGMMELEKERIDLIECLETSLNLVAEDASRKGLSV 811

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVK 724
               + ++  + + D  RL QI   +L NA+ F+ KG  V L  +     D  +  F V 
Sbjct: 812 SYEVEPQVPRYLMGDMTRLRQILVNLLGNAVKFTDKG-FVRLDVSALPVEDGHEIQFRVT 870

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I +D    +F  F        R   G GLGL+I +    L GG +   S     +
Sbjct: 871 DSGIGISQDRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHLAELMGGGIWAESVPGEGS 930

Query: 783 TINCRI 788
           +    I
Sbjct: 931 SFYFTI 936



 Score = 43.0 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRLSPGTHIRNIAATCSRYY 491
            ++   T++ L +G+ +  P G I  SNPA   + +  EE     G  ++++ +   +  
Sbjct: 4   ERMFQSTLEILEDGICICDPSGEILYSNPAAERMARSLEELNCGKGGVLKDLCSGILKTA 63

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVR 550
             +DG      +    D +R+ ++ ++  +     E  SII    A      V+  +   
Sbjct: 64  KSADGPIHRGDV----DLQRRRIEYSIATMQGKGYEGRSIITFREAHPSSGQVHDNNPPS 119

Query: 551 AERALTEKNEALRKADEIKNSFVQ 574
                  +++        ++  + 
Sbjct: 120 ENAIFWIEHQGRNDDLRERDRIMA 143


>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
            wolfei subsp. wolfei str. Goettingen]
 gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
            wolfei str. Goettingen]
          Length = 1442

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 136/810 (16%), Positives = 288/810 (35%), Gaps = 102/810 (12%)

Query: 65   ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD--TDLLSFENWLKFH 122
            + +   ++ S L  +      WD          +    +   + +    L  +E+ +   
Sbjct: 247  LKESEDRWSSALECSGNGVWDWDAVTNRVFFSKEWKSMLGYEEHEVGDSLQEWESRVHPE 306

Query: 123  HYIKLSKATEKLRKEGQSF---DLVAETQNDCA--IKIEGRVSGSCAFLRILSLDGIYSE 177
             + ++    +K           +    T++     +   G+V       ++L + G +++
Sbjct: 307  DWERIQVELQKHFDGQTPVYGSEHRLRTRDGSYKWLLDRGKVINRDEEGKVLRVIGTHTD 366

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----KNTETEGIV 232
            + E     + LS      K + D+L FL W +D+ G  +  N  ++        E  G  
Sbjct: 367  ITEIKKVQEDLSRTRGQLKAILDNLPFLAWFKDKEGHHIEVNRFFEISCGLTRDEIIGKT 426

Query: 233  FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSF 286
                      L   E  + ++ +S  + N  E V     G    +   +        N  
Sbjct: 427  DLDIWPRELALVYMEDDREVM-ASKKQINKVERVQDKAGG--IWFNTFKTPVFDQEGNVI 483

Query: 287  GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRYLQF--HNRSFV-ELWEI 341
            G AGI  D+++   +  +L      L +L  AI   IF ++    +   N +F      +
Sbjct: 484  GTAGITRDITESRRLEHELIEQRTFLKSLIDAIPDLIFYKDINSLYLGCNHAFAHRFIGL 543

Query: 342  DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                +      D + +         E   +   K+    +   +  +++T  L +G  + 
Sbjct: 544  SEEEIVGRTDLDFVKDQ--------ETARFFIQKDREILLSGETRMNEETITLADGSIME 595

Query: 402  VIVTSNP--RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV--AVFGPD---- 453
            +     P  +GGT+     ++  +         + ++ + + +++      +   D    
Sbjct: 596  LETVKTPFFKGGTVAGLIGVSRDITKRKIAQNQLLIKQKILSNIASATNELLINSDYYEA 655

Query: 454  --------------GRIKLS------NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
                           R+ +       N A+ S      + +     I N       +   
Sbjct: 656  INKCLALLGEATGVDRVYMFKNHYADNKAYTSYRMGWNSGV-FPAQINNPKLQNIPFDQA 714

Query: 494  SDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTD---- 547
             +  +            R   +G ++  LL  S+L   ++P+        +V   +    
Sbjct: 715  QNFIEPLMRNEAVKAQVRDFGEGWIKETLLEQSILSILVLPIFVGGVFWGYVGFDECKEE 774

Query: 548  -----------------------SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                                     + E+ L +  E    A+  K+ F+ ++S+E+R+P+
Sbjct: 775  RNWSEDEFSILKAFSNSIAEAIERSQMEQKLAQAKEIAESANYAKSLFLANMSHEIRTPM 834

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              I+GF +LL  ++   L+++Q  YV+    +S ILL L+NDILD + ++AG + +    
Sbjct: 835  NGILGFLELLGETE---LSTEQQDYVQEAHRASEILLYLINDILDFSKIEAGKLAMEEIP 891

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ +     A K  E  + +  +    +    V D  RL QI + +LSNA+ F+ 
Sbjct: 892  FRVRTVVEDAVSLQAPKAREKGLEMHTLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTH 951

Query: 704  KGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
             G  +++      + D  +  F V ++G  I  +  + +F  F        R   G GLG
Sbjct: 952  TGEILVIVETINESSDKAEIAFEVSDSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLG 1011

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCR 787
            L+I    + L  G + + S     +     
Sbjct: 1012 LAISYELVRLMEGTMQVKSKLGQGSKFYFT 1041



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 125/424 (29%), Gaps = 35/424 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++    +  + L      +    +     VW  D   + ++ +  +K     E      +
Sbjct: 236 DITGRKIAEELLKESEDRWSSALECSGNGVWDWDAVTNRVFFSKEWKSMLGYEEHEVGDS 295

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG--------- 287
           + E       E  +R+        +    V   EH         + L   G         
Sbjct: 296 LQEWESRVHPEDWERIQVELQKHFDGQTPVYGSEHRLRTRDGSYKWLLDRGKVINRDEEG 355

Query: 288 ----EAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIF-DQNRYLQFHNRSFVEL 338
                 G   D+++   V + L+ T      IL NL   +A F D+  +    NR F   
Sbjct: 356 KVLRVIGTHTDITEIKKVQEDLSRTRGQLKAILDNLPF-LAWFKDKEGHHIEVNRFFEIS 414

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             +    +      D +     +   + +       K+ I  V +  +     W   N  
Sbjct: 415 CGLTRDEIIGKTDLD-IWPRELALVYMEDDREVMASKKQINKVERVQDKAGGIWF--NTF 471

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
              V        GT  +  ++T    LE +           ID + + +     +     
Sbjct: 472 KTPVFDQEGNVIGTAGITRDITESRRLEHELIEQRTFLKSLIDAIPDLIFYKDINSLYLG 531

Query: 459 SNPAF-RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            N AF        E  +   T +  +    +  +      ++  +  T  ++E      T
Sbjct: 532 CNHAFAHRFIGLSEEEIVGRTDLDFVKDQETARFFIQKDREILLSGETRMNEE------T 585

Query: 518 LELLSDSVLEYSIIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           + L   S++E   +  P       A  +    ++T    A+  L  K + L       N 
Sbjct: 586 ITLADGSIMELETVKTPFFKGGTVAGLIGVSRDITKRKIAQNQLLIKQKILSNIASATNE 645

Query: 572 FVQH 575
            + +
Sbjct: 646 LLIN 649



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 119/335 (35%), Gaps = 29/335 (8%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK- 245
            L+   + F  LF++++  ++  ++ G+ ++AN +     E  G   ++  G S  L + 
Sbjct: 6   SLNEVKASFDTLFNTIEDYLFIINENGNAVYANRA---AIEKLGYSQEEIQGLSLLLLQP 62

Query: 246 ----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA----GIAIDVSK 297
               +E  +   S  A +++ C      + G+    +   V   +        I+ D+S+
Sbjct: 63  PERRDEAAQIFASMMAGQRDHCPIPLYTKDGSYIPVETSVVRGQWQGTPVFFAISKDISQ 122

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-ELL 356
               N + +  + I +   +AI+  D  +Y+   N +F+   E +   +    S +  ++
Sbjct: 123 ISQANARFSKAFSI-NPALMAISKIDSGKYID-VNEAFLSRLEYNRDEVIGKTSGELGII 180

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
            F      + E       ++   ++   S +        +       + ++ +   + + 
Sbjct: 181 PFAERDLLIKELYQQGCIRDKELTLITKSGSELYVIFSVD------FIETDDQTYLLTVM 234

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T +   E             ++    GV  +       ++N  F    K  ++ L  
Sbjct: 235 VDITGRKIAEELLKESEDRWSSALECSGNGVWDWDA-----VTNRVF--FSKEWKSMLGY 287

Query: 477 GTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             H + +         +  D   +   +   FD +
Sbjct: 288 EEHEVGDSLQEWESRVHPEDWERIQVELQKHFDGQ 322


>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 954

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 100/653 (15%), Positives = 243/653 (37%), Gaps = 64/653 (9%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK-AIGESR 241
            +  K      +   + + L   +   D  G IL  N S+++     G   +   +G + 
Sbjct: 5   QRRAKHRRDHRLDPSIINVLPANIAVLDAQGTILAVNESWERFAAANGFTGESYGVGLNY 64

Query: 242 KLFKEEIKKRMISSSALE----------KNFCETVSTLEHGNNKSYKIVRVL----NSFG 287
               +    +  +    +          + F     +      + ++++        S+G
Sbjct: 65  LRICDAAGTQPDAQHVAQGIRHILDGTIRAFSYEYESSSSTLRRWFRVIVTPMQGSRSYG 124

Query: 288 EAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
              + I+VS     E  ++        I+      I + ++   ++  N +   ++    
Sbjct: 125 AVVMHINVSDLKQAEAAMHQSEVRLRAIVDTAVDGIVVINERGIIESVNPAVTRMFGYTS 184

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             L        + +   + +        ++ ++ +  + +     ++     +G +  + 
Sbjct: 185 NQLLGQNVKLLMPDPYHTEHDRYLTNYLQSGQKKVIGIGREVLGLRN-----DGVSFPIE 239

Query: 404 VTSNP---RGGT--IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           +  +     G      +  +++++   E ++          ++    G+ +    G I L
Sbjct: 240 LAVSEMLVDGARKFTGIVRDISLRKQAEAQFRQ-------VVESAPNGMLMIDSLGNITL 292

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N    +++      +  G  +  +     R  + +     F+A  +      + L G  
Sbjct: 293 VNKQVETMFGYSREEML-GRPVEMLIPERFRPNHPAHRIGYFSAPSSRAMGAGRELFGLH 351

Query: 519 ELLSDSVLEYSIIPL--PNAQ-TMLTFVNVTDSVRAERALTEKNEALRKAD--------- 566
           +   +  +E  + P+  PN +  + + V++T   R E AL++  + L   +         
Sbjct: 352 KSGQEFPVELGLNPIDTPNGKLALASIVDITMRKRTESALSKAAQDLEWKNWEISEARDQ 411

Query: 567 -----EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                + K  F+  +S+E+R+P+  ++G T LL  +   +L+++Q  Y++ +  SS  LL
Sbjct: 412 AVKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLLDT---ALSTEQRDYLQTLRHSSESLL 468

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD + ++AG   +      L   + +    +A    + ++ +  + D +   + 
Sbjct: 469 RIINDILDFSKIEAGKFTIEQIPFDLRMTIEDTLDMLAPASQDRHLELVGLIDAQTPRTV 528

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCK 736
           + D  R+ Q+ + +L NA+ F+ +G  +I     D         F V + G  +  +   
Sbjct: 529 IGDPGRIRQVLTNLLGNAIKFTEQGEVLIQVLPLDEDPTFVMLRFEVIDTGIGLSPEAQA 588

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +F  F         +  G GLGL+I +  + L GG + + S     T I   
Sbjct: 589 KMFQAFTQADSSTARKYGGTGLGLTICKRLVELMGGEIGLQSMPGLGTRIWFT 641



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 81/276 (29%), Gaps = 22/276 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           ++  +++       +       + + D+    +   ++ G I   N +    T   G   
Sbjct: 128 MHINVSDLKQAEAAMHQSEVRLRAIVDTAVDGIVVINERGIIESVNPA---VTRMFGYTS 184

Query: 234 QKAIGESRKLFK-----EEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIVR 281
            + +G++ KL        E  + + +     +     +     G             +  
Sbjct: 185 NQLLGQNVKLLMPDPYHTEHDRYLTNYLQSGQKKVIGIGREVLGLRNDGVSFPIELAVSE 244

Query: 282 VLNSFGE--AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           +L        GI  D+S       Q     +++ +    + + D    +   N+    ++
Sbjct: 245 MLVDGARKFTGIVRDISLRKQAEAQF---RQVVESAPNGMLMIDSLGNITLVNKQVETMF 301

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQ 398
                 +   P    + E  R  +       +           +     HK     P   
Sbjct: 302 GYSREEMLGRPVEMLIPERFRPNHPAHRIGYFSAPSSRAMGAGRELFGLHKSGQEFPVEL 361

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
            L+ I T N +     +  ++T++   E+  +   +
Sbjct: 362 GLNPIDTPNGKLALASIV-DITMRKRTESALSKAAQ 396


>gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1234

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 121/595 (20%), Positives = 228/595 (38%), Gaps = 34/595 (5%)

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           W   +     + N +  +          + I    K+         + S   E+N   T 
Sbjct: 372 WLTRR----SFVNPA-SRLLTHLEECSAEPIKPPEKITVGWAPWFQLVSRIFEENKQYTR 426

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
              E  N +  K+V             D ++      +      +L ++  AI   D+  
Sbjct: 427 HLAEQ-NRRLDKLVAQRTER-----LKDTTERR--EQEYVLLRSLLDSIPEAIVFKDKEG 478

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
                N+S   +     + +    S+    +  +SA    E  + +   E     Y+   
Sbjct: 479 RYLGCNKSAERMLGFSESEMIGQFSDALTADE-QSARIRAE--DERVLTERTPLRYQEKV 535

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                  L +   +          G I ++ ++T + +   +     +     +D + + 
Sbjct: 536 ELAGKPVLLDTLKIPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDV 595

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIIT 505
           +  +  D    + NPA+ S+   + N        I  +     R   E       A  + 
Sbjct: 596 LWDWYLDSEQIICNPAYYSMLGYKVNEFPALVSTIDELIHPDDRIRVEEYREQYLANPVG 655

Query: 506 SFDDERKSLQ---GTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           +FD E + L    G   LLS   V+EY+    P  + + T  ++T   R E A+ E  + 
Sbjct: 656 AFDIEFRMLGKSGGYHWLLSRGRVVEYTPNNQP-KRMLGTHKDITRHKRNEVAMLEAKQD 714

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K+ F+ ++S+E+R+P+  IIG   L + +   SL  +Q  Y+E    S+  LL
Sbjct: 715 AEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRT---SLTPQQKDYLEKAGFSAHSLL 771

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG ++L      L+ +L+      A K  E  + + + +    G  +
Sbjct: 772 RIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLIL 831

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMC 735
             D  RL Q+   +LSNA+ F+  G  + L               F +++ G  I ++  
Sbjct: 832 EGDPLRLGQVLINLLSNAVKFTQSGE-IELGCEDVGERDHRITLKFWIRDTGIGISKEQQ 890

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++F+ F        R   G GLGLSI +  ++L GG + + S     +T +  I
Sbjct: 891 ATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSLMGGTMQVESEMSVGSTFSFTI 945



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 98/309 (31%), Gaps = 37/309 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++      + + L DS+   +  +D+ G  L  N S ++  
Sbjct: 434 RLDKLVAQRTE--RLKDTTERREQEYVLLRSLLDSIPEAIVFKDKEGRYLGCNKSAERML 491

Query: 227 ETEGIVFQKAIGE-SRKLFKEEIKKRMISSSAL----EKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG+ S  L  +E   R+ +                     G       ++
Sbjct: 492 ---GFSESEMIGQFSDALTADEQSARIRAEDERVLTERTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 IPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDVLWDWYLDSEQIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK------TWKENIFSVYKSS 385
           N ++  +    +       S  + L       ++ E            +      + KS 
Sbjct: 609 NPAYYSMLGYKVNEFPALVSTIDELIHPDDRIRVEEYREQYLANPVGAFDIEFRMLGKSG 668

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD-----LETKYNTLVKVQ--GE 438
             H   W L  G+ +     + P+   +   +++T         LE K +  +      E
Sbjct: 669 GYH---WLLSRGRVVEYTPNNQPK-RMLGTHKDITRHKRNEVAMLEAKQDAEMANLYKSE 724

Query: 439 TIDHLSEGV 447
            + ++S  +
Sbjct: 725 FLANMSHEI 733


>gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella
           amazonensis SB2B]
 gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1236

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/508 (20%), Positives = 197/508 (38%), Gaps = 33/508 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                +      +L ++  AI   D+  +    N++   +     A +    S       
Sbjct: 451 ERREREYALLRSLLDSIPEAIVFKDKEGHYLGCNKAAERMLGFSEAEMIGLSS------- 503

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP------NGQTLHVIVTSNPRGGT 412
                  PEQ +    ++      +    +++   L       +   L          G 
Sbjct: 504 --EELTSPEQGSRIRAEDEQVLTERKPLRYQEKIELAGKPVLLDTLKLPFYNRRGELMGL 561

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I ++ ++T + +   +     +     +D + +G+  +  D    + NPA+ S+   + N
Sbjct: 562 IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKTN 621

Query: 473 RLSPGTH-IRNIAATCSR----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                   I ++     R     Y E    D   A    F    K+ Q    L    V+E
Sbjct: 622 EFPALLSTIDSLIHPDDRIRVQEYREQYLKDPIGAYEIEFRMRAKTGQYHWMLSRGRVVE 681

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           ++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  I
Sbjct: 682 FTQDAQP-KRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAI 740

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG   L   +   SL  +Q  Y++  S S+  LL ++NDILD + ++AG ++L      L
Sbjct: 741 IGMLQLAGRT---SLTEQQKDYLDKASFSAQSLLRIINDILDFSKIEAGKLELEKVAFPL 797

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
           + +L+      A +  E  I + + +    G  +  D  RL Q+   +LSNA+ F+  G 
Sbjct: 798 DKVLDHSLDLNALRAQEKGIELLLYAPVSAGIMLKGDPLRLGQVLINLLSNAVKFTQNGE 857

Query: 707 TVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            + L               F V++ G  I  +    +F+ F        R   G GLGLS
Sbjct: 858 -IELGCEDVGERDHRITLKFWVRDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLS 916

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCR 787
           I +  +++ GG + + S     +T +  
Sbjct: 917 ISKHLVSMMGGTMQVESEPGVGSTFSFT 944



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 94/296 (31%), Gaps = 28/296 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G  L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKETTERREREYALLRSLLDSIPEAIVFKDKEGHYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+          K           G       ++
Sbjct: 492 ---GFSEAEMIGLSSEELTSPEQGSRIRAEDEQVLTERKPLRYQEKIELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELMGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIIC 608

Query: 332 NRSFVELWEID----LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           N ++  +         A L+T  S     + +R      + L        I    ++  T
Sbjct: 609 NPAYYSMLGYKTNEFPALLSTIDSLIHPDDRIRVQEYREQYLKDPIGAYEIEFRMRAK-T 667

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +  W L  G+ +     + P+   +   +++T     E     L   Q   + +L
Sbjct: 668 GQYHWMLSRGRVVEFTQDAQPK-RMVGTHKDITRHKSNEVAL--LEAKQDAELANL 720



 Score = 42.6 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 62/212 (29%), Gaps = 33/212 (15%)

Query: 363 NKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
             +PE     W+ W + +  +++ ++ +       N +   ++                T
Sbjct: 397 RAVPEKITPGWEPWFQLVSRIFEENQQYTKHLAEQNKRLDKLVARR-------------T 443

Query: 421 VQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            ++ +   +      +    +D + E +     +G     N A   +    E        
Sbjct: 444 ERLKETTERREREYALLRSLLDSIPEAIVFKDKEGHYLGCNKAAERMLGFSE-------- 495

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSV-LEYSIIPLPNA 536
              +    S      +      A       ERK L  Q  +EL    V L+   +P  N 
Sbjct: 496 -AEMIGLSSEELTSPEQGSRIRAEDEQVLTERKPLRYQEKIELAGKPVLLDTLKLPFYNR 554

Query: 537 QT-----MLTFVNVTDSVRAERALTEKNEALR 563
           +      +  + +VT    +   L    E   
Sbjct: 555 RGELMGLIAVWRDVTREYESAEQLRLSEERYH 586


>gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS
           [Shewanella putrefaciens 200]
          Length = 1234

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 105/512 (20%), Positives = 206/512 (40%), Gaps = 31/512 (6%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D ++      +      +L ++  AI   D+       N++   +     + +    S D
Sbjct: 448 DTTERR--EREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSED 505

Query: 354 ----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               E+   +R+        + +  K+     Y+          L +   L         
Sbjct: 506 LTSPEMGIRIRAE-------DQQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGEL 558

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I ++ ++T + +   +     +     +D + +G+  +  D    + NPA+ S+   
Sbjct: 559 LGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGY 618

Query: 470 EENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELL--SDS 524
           + N        I ++     R   E          + +++ E + L   GT   +     
Sbjct: 619 KTNEFPALVSAIDHLTHPDDRIRVEEYRNQYLQDPVDAYEIEFRLLGKNGTYHWVLCRGR 678

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+E++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+
Sbjct: 679 VVEFTADGQP-KRMLGTHKDITRQKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPM 737

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG   L + +   SL  +Q  Y+E    S+  LL ++NDILD + ++AG ++L    
Sbjct: 738 NAIIGMLQLAQRT---SLTPQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVP 794

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L+ +L+      A K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+ 
Sbjct: 795 FPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQ 854

Query: 704 KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            G  + L               F V++ G  I +D  + +F+ F        R   G GL
Sbjct: 855 SGE-IELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGL 913

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI +  +++ GG + + S     +T +  I
Sbjct: 914 GLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 92/297 (30%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKDTTERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 492 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDQQVLKDRTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK-----TWKENIFSVYKSSE 386
           N ++  +            S  + L       ++ E  N          E  F +   + 
Sbjct: 609 NPAYYSMLGYKTNEFPALVSAIDHLTHPDDRIRVEEYRNQYLQDPVDAYEIEFRLLGKNG 668

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           T+   W L  G+ +       P+   +   +++T Q   E     L   Q   + +L
Sbjct: 669 TYH--WVLCRGRVVEFTADGQPK-RMLGTHKDITRQKSNEVAL--LEAKQDAELANL 720



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 15/206 (7%)

Query: 360 RSANKLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE++   W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 394 QEPRKPPEKITQGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 447

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 448 DTTERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 500

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 501 LSSEDLTSPEMGIRIRAEDQQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELLG 560

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYH 586


>gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1767

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 120/718 (16%), Positives = 262/718 (36%), Gaps = 69/718 (9%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
            ++ +H     +   + R    +       ++  A+K +G    +   L IL  D      
Sbjct: 565  MRSNHARDRLQFLREGRDRPMA-----NARHVRALKADGGEFVAEIALSILPADHEGRRQ 619

Query: 179  AETTLK--------CKKLSNHISVFKVLFDSLDFLVWHRDQAGDI---LWANISYKKNTE 227
               +++         +K+ +    F+ L  ++   V +R + GD+    + + +    T 
Sbjct: 620  VAASIRDMTQKLAVEQKIRDSELRFRGLVTNIPGAV-YRTRIGDVWVMEYVSDNIADITG 678

Query: 228  TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                 F +    +      E  + +           +    +E+        +R ++  G
Sbjct: 679  FAASQFIENRQRTFASLILEEDRELCHQHIDRALAQQETFEVEYRIRHRDGSIRWVHEKG 738

Query: 288  EAGIAI------------DVSKEITVNDQLTHTYEILHNLTVAIA--------IFDQNRY 327
            +A                D+++      +L  +   L N+T +I         +   +  
Sbjct: 739  KASYTEEGFPLWFDGSIDDITESKLAMVELEASRLQLTNITESIPCTVYQLRWVSPADHT 798

Query: 328  LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
              F + +   +  +    L      + + E +    +           E+     +    
Sbjct: 799  FTFLSGAAFHMLGLHREDLLK--DFNIIAERIFDEERPEVVRALAGKSEDKLQWVR---- 852

Query: 388  HKDTWHLPNGQTLHVIVTS----NPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETID 441
             +  +  PNG    +   +    N  G  IW     ++T +  +E +            D
Sbjct: 853  -EFRYRHPNGSIRWMEAGASGHYNDDGAIIWNGYVMDITERKAIEEELAVSEAHFKALFD 911

Query: 442  HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
              + G+      G I   N  +          L  G  I ++ +   +   ++   +L  
Sbjct: 912  GSTIGIVNVDAKGVILDCNDQYCEDMGQTRESL-CGVPIFDVLSLQDKETAKAQFRELAE 970

Query: 502  AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALT 556
              +  +  ER  ++   E L    +  ++  L ++Q      +++ V++T+       L 
Sbjct: 971  GKVDHYRGERSFIRPNGEPL---WMTVNVSALFDSQKQFESAVVSMVDMTELKLLSDELL 1027

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               E    A + K  F+ ++S+E+R+P+  IIG + L   +   +L+ KQ  YVE I  +
Sbjct: 1028 VAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT---ALDKKQKNYVEKIERA 1084

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            S  LL+++NDILD + ++AG + +      L+ +L ++    + K     + +       
Sbjct: 1085 SKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPN 1144

Query: 677  LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731
            +      D  RL Q+   +++NA+ F+ +G  +    +++   D+    FSV+++G  + 
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDSGIGLT 1204

Query: 732  EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             D    +F  F        R   G GLGL+I +  + L GG + + S     +T    
Sbjct: 1205 ADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFT 1262


>gi|21228875|ref|NP_634797.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907403|gb|AAM32469.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 807

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 119/601 (19%), Positives = 231/601 (38%), Gaps = 44/601 (7%)

Query: 214 DILWANISYK--KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-ETVSTLE 270
           ++ W++  Y+    +  E      A          +     +  +   K +  +    L+
Sbjct: 222 ELYWSDEIYRIFGLSPQEFGATYDAFLSYVHPEDRDCVNNAVKGALEGKPYSIDHRIILK 281

Query: 271 HGNNK-SYKIVRVLNSFG-----EAGIAIDVSKEITVNDQL----THTYEILHNLTVAIA 320
            G  +  ++   V+   G      AGI  D+++   +   L     +   ++      + 
Sbjct: 282 GGEERIVHEQGEVIFENGNVPVRMAGIVQDITERKKIEKALGMANAYNRSLIEVSLDPLV 341

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
               +  +   NR+     EI   +  +     +  ++     K  E   +  +++ +  
Sbjct: 342 TIGPDGKITDVNRA----TEIVTGYFRSELIGTDFSDYFTEPEKAKEGYQY-VFQKGLVR 396

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQG 437
            Y+    HK     P     +  +  +  G    +F    ++T     E K   L     
Sbjct: 397 DYQLEIRHKHGHITP--VLYNASIYRDENGRVTGVFAAARDITELKKAEEKIKAL----A 450

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             ++  ++ +     DG I   N     ++      +          +       + +  
Sbjct: 451 NAVESSNDAIITGTLDGTITSWNKGAEQIYGYLAEEVMGKN-----VSILEPDNLKGEIK 505

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            LF  I      +R     TL L  D +   +  ++ P+ +        +       E+ 
Sbjct: 506 QLFDKIKQGKKVKRYE---TLRLKKDGIAVNVSVTLSPIFDVSGNPVAFSGIARDITEKK 562

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L  + +    A+  K+ F+ ++S+ELR+PL +IIGF+D+L     G LN KQ + +
Sbjct: 563 ITENLLHEKQMAEFANRTKSEFLANMSHELRTPLNSIIGFSDMLYEQAYGELNQKQLRAI 622

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             IS S   LLNL+N ILDL+ ++A  M+L+Y    L   L+ ++  ++    + NI I+
Sbjct: 623 SNISNSGKHLLNLINGILDLSKIEANKMELDYKEFELASSLDLIRNILSPIADKKNIEIE 682

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              D  +    AD  R ++I   ++ NA+ FS + S V +   +       +V++ G  I
Sbjct: 683 TGVDSSISKICADEDRFIRIMFNLVDNAIKFSFENSLVKIGTRKKGELVEITVEDTGIGI 742

Query: 731 PEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F  F         + +G GLGLS+V+  +NLHGG+V   S     +T    I
Sbjct: 743 KTEDQNKLFKPFSQVNSFSSKKFQGTGLGLSLVKQIVNLHGGYVWFKSEQGKGSTFAFAI 802

Query: 789 P 789
           P
Sbjct: 803 P 803


>gi|284041098|ref|YP_003391028.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820391|gb|ADB42229.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 952

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 122/641 (19%), Positives = 251/641 (39%), Gaps = 44/641 (6%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGIVFQ 234
           +   K  +L      ++ L +S+  +++     G   + +   +K       E     F 
Sbjct: 50  QIRDKLTELRESEQRYRQLIESVQDIIYKVSPNGFFTFVSPVVEKLLGYTEEEFLNSHFT 109

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE----AG 290
             +    +    +  + M+S           V           + VR++ + G+      
Sbjct: 110 SVVKPGYRKVLIDFYRTMMSERQDSTYIEFPVLAKNGRTVWIGQTVRLIETHGQIEELVA 169

Query: 291 IAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDL-AF 345
           +A D+S       +L  T   L     NL   + + D+   +   N  F +++++ L   
Sbjct: 170 VARDISDRKLAEMELETTQTRLSTLITNLQSGVMVEDERGRVILANALFCDIFQLPLTPD 229

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIV 404
                   E  + ++     PEQ     +   +  +    +    +   + NG+ L +  
Sbjct: 230 QLVGYDCTEARQQVKQLFAQPEQ-----FISRMNELLTGRQACVGEEISMANGRILELDY 284

Query: 405 TS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
                  N   G +W + ++T +           +     ++++  G+     D  I  S
Sbjct: 285 IPIFLDANQYMGHLWKYTDVTEKYMARELIRRSEEKYRGIMNNMELGLFEVDNDQIIVRS 344

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                 +    E  +     I  +         E    +    I  S++     LQ T +
Sbjct: 345 YERCCQMLGYSEAEMVGKNAIDLLVPAEFVGIVERQQQERQQGIAGSYE-----LQLTKK 399

Query: 520 LLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             S   +  S +P+ +        M    ++ +  + E  L    +   +A + +  F  
Sbjct: 400 DGSRIWVLVSGVPIQDEHGTVVGSMSIHYDMNERKQLEHELARAKQYAEEAQQAEKQFFA 459

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  IIG + LL  ++    +++Q +Y+  +  S+  L +L++D+LD+  ++
Sbjct: 460 NMSHEIRTPLNAIIGMSHLLYDTQ---PSAQQREYINILKTSADFLHSLISDLLDMTKIE 516

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSK 693
           AG ++++     L  LL   ++    K+    I I V+ D ++  +FV D   L QI   
Sbjct: 517 AGHIEVHARPFDLAGLLRSTQKVFEMKLQGRPISIDVLLDTRITNAFVGDDVMLNQIMMN 576

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           ++ NA  F+ +G   +I K  ++ GD     F+V + G  IP D    VF +F     +G
Sbjct: 577 LVGNAEKFTEEGQIQIIGKVKKEEGDKTWIEFTVSDTGVGIPADKIGLVFKKFKQVNSQG 636

Query: 750 -QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +G GLGL+I +  + L GG +S+ S +   ++    IP
Sbjct: 637 YKHKGTGLGLAITKELVELQGGTISVKSQEGVGSSFTFVIP 677



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 57/430 (13%), Positives = 133/430 (30%), Gaps = 66/430 (15%)

Query: 52  AKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE-----TPEIIGQLHQRID-- 104
                +    L+E+ +   +Y  L+       I     +      +P +   L    +  
Sbjct: 45  ENLEQQIRDKLTELRESEQRYRQLIESV-QDIIYKVSPNGFFTFVSPVVEKLLGYTEEEF 103

Query: 105 ---------IPQTDTDLLSFENWLKFHHYIKLSKATE--KLRKEGQSFDLVAETQNDCAI 153
                     P     L+ F   +      + S   E   L K G     V   Q    I
Sbjct: 104 LNSHFTSVVKPGYRKVLIDFYRTMMSE--RQDSTYIEFPVLAKNG---RTVWIGQTVRLI 158

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +  G++    A  R         ++++  L   +L    +    L  +L   V   D+ G
Sbjct: 159 ETHGQIEELVAVAR---------DISDRKLAEMELETTQTRLSTLITNLQSGVMVEDERG 209

Query: 214 DILWANISYKKNTETE-------GIVFQKAIGESRKLF--KEEIKKRMISSSALEKNFCE 264
            ++ AN  +    +         G    +A  + ++LF   E+   RM       +    
Sbjct: 210 RVILANALFCDIFQLPLTPDQLVGYDCTEARQQVKQLFAQPEQFISRMNELLTGRQACVG 269

Query: 265 TVSTLEHGNNKSYKIV----RVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLT 316
              ++ +G       +          G      DV+++    + +  + E    I++N+ 
Sbjct: 270 EEISMANGRILELDYIPIFLDANQYMGHLWKYTDVTEKYMARELIRRSEEKYRGIMNNME 329

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           + +   D ++ +        ++     A +    + D L         +P +      ++
Sbjct: 330 LGLFEVDNDQIIVRSYERCCQMLGYSEAEMVGKNAIDLL---------VPAEFVGIVERQ 380

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKY 429
                   + +++      +G  + V+V+  P         G++ +  ++  +  LE + 
Sbjct: 381 QQERQQGIAGSYELQLTKKDGSRIWVLVSGVPIQDEHGTVVGSMSIHYDMNERKQLEHEL 440

Query: 430 NTLVKVQGET 439
               +   E 
Sbjct: 441 ARAKQYAEEA 450


>gi|24372448|ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
 gi|24346431|gb|AAN53935.1|AE015531_1 sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
          Length = 1765

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 122/754 (16%), Positives = 278/754 (36%), Gaps = 72/754 (9%)

Query: 77   TENNCLTIVWDGKDETP-EIIGQLHQRIDI--PQTDTDLLSFENWLKFHHYIKLSKATEK 133
                     +D K     +I   L + +         D L               +    
Sbjct: 538  NSRCQQLFGYDAKAMLALQIETLLPEELRHLHTGERLDFLREGRDRPMASA----RHVRA 593

Query: 134  LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
            L+ +G  F       +      +GR            +     ++ +  +  +K+ +   
Sbjct: 594  LKSDGGEFVAEIA-LSILPSDFDGR----------RQVAASIRDMTQKIMVEQKIRDSEL 642

Query: 194  VFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
             F+ L  ++   V+     +   I + + +  + T      F +    +      E  + 
Sbjct: 643  RFRGLVTNIPGAVYRTRIGEVWVIEYVSDNIAEITGYAASQFIENRQRTFTSLILEDDRA 702

Query: 252  MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI------------DVSKEI 299
            + +         +    +E+        +R ++  G+A  +             DV++  
Sbjct: 703  LCNQHIERALAQQETFEVEYRIRHRDGSIRWVHEKGKASYSEEGLPLWFDGSIDDVTESK 762

Query: 300  TVNDQLTHTYEILHNLTVAIA--------IFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
               D++  + + L N+T +I         +   +R   F + + + +  +    L     
Sbjct: 763  LAIDEIEASRQQLTNITESIPCTVYQLRWVSPTDRSFTFLSGAALAMLGLHREELLR--D 820

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---- 407
             + + E +    + PE ++    K +    +      +  +  PNG    +   ++    
Sbjct: 821  FNIIAERIFDEER-PEVISALAGKSDDQLRW----IREFRYRHPNGGIRWMEAGASGHYA 875

Query: 408  PRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
              G  IW     ++T +  +E +            D  + G+      G I   N  F  
Sbjct: 876  DDGSIIWNGYVMDVTERKSIEEELAVSEAHFKALFDGATIGIVNVDIKGLILDCNYQFCE 935

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                  + L   T I ++ +   +   ++   +L    I  +  ER  ++ + E L    
Sbjct: 936  DMGLSRDELRS-TPIFDVLSAQDKDVAKAQFKELVEGKIDHYRGERSFVRPSGEPL---W 991

Query: 526  LEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            +  ++  L ++Q      +++ V++T+       L    +    A + K  F+ ++S+E+
Sbjct: 992  MTVNVSTLLDSQNQFESAVVSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEI 1051

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+P+  IIG + L   ++   L+ KQ  Y+E I  +S  LL+++NDILD + ++AG + +
Sbjct: 1052 RTPMNAIIGMSQLCLQTQ---LDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDI 1108

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
               +  L+ +L ++    + +  +  I +       +    + D  RL Q+   +++NA+
Sbjct: 1109 ENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAI 1168

Query: 700  DFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
             F+ +G  +    +++   D+    FSV+++G  + ++    +F  F        R   G
Sbjct: 1169 KFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGG 1228

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             GLGL+I +  + L GG + + S     +T    
Sbjct: 1229 TGLGLAISKQLVELMGGSIGVESQLGHGSTFFFT 1262



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 86/268 (32%), Gaps = 28/268 (10%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA--IAIFDQNRYLQFHNRSF 335
           +IV +  +F +    +   ++  ++ +      ++  ++        D +  L   +   
Sbjct: 363 EIVTLSETFNQMAALLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGV 422

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHL 394
            ++  I    L          + L SAN     LN K W+    ++  ++   H+     
Sbjct: 423 TKVLGIPPELLKRK------YQRLFSAN----PLNEKNWEYTDLALKGQNVPPHQIELVD 472

Query: 395 PNGQTLHVIVTSNPRGGTIW-------MFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
             GQ   + V   P             +F ++T Q                 ++   E +
Sbjct: 473 AKGQARRLDVFMQPLVSDTGELMSVEMLFTDVTEQFSAAA-------WSNAVLEAAPEAM 525

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            +   +G+I  SN   + L+  +   +     I  +     R+ +  +  D         
Sbjct: 526 LIVDQNGQIVFSNSRCQQLFGYDAKAML-ALQIETLLPEELRHLHTGERLDFLREGRDRP 584

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPN 535
               + ++       + V E ++  LP+
Sbjct: 585 MASARHVRALKSDGGEFVAEIALSILPS 612


>gi|124009854|ref|ZP_01694522.1| PAS [Microscilla marina ATCC 23134]
 gi|123984175|gb|EAY24536.1| PAS [Microscilla marina ATCC 23134]
          Length = 1808

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 120/679 (17%), Positives = 242/679 (35%), Gaps = 61/679 (8%)

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            R   +  + +++       ++L       +   D+   L+   D  G + + N  + K  
Sbjct: 855  RQAGVSVLVTDVTSHKTAQRRLRQSEEQLQDFLDNASILIQSVDLEGTVHYVNKYWCKKL 914

Query: 227  ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST---LEHGNNKSYKIVRVL 283
                    +       + +E+   R +      +   + +ST    + G     +    +
Sbjct: 915  GYSKAEALRTNLIDLVVPEEQEDYRALLQHLKTEGGAQQISTRLITKDGKTLMLEGSINI 974

Query: 284  NSFGEA----GIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
               G+         DV++       +          L N  + I I+D+  +    N + 
Sbjct: 975  RKDGKPLLTRSFLQDVTERNQAERAILEQNRLFEAFLENSPIGIQIYDKQGFSLQMNDAQ 1034

Query: 336  VELWEIDLA------FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
              +  +D         L    S +  L+F   A    E +     +  +    +  +  +
Sbjct: 1035 KRILGLDSQETPKFNILQDERSQEAGLDFFYKAAYGGESIFLPRLETELVIKEEEGKAIQ 1094

Query: 390  DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
                L N     +    N   G +   ++++ Q  +E + N          D +   V V
Sbjct: 1095 KEVCL-NLIIFPIKNDYNEVEGVVTFTQDVSEQFTIEQELNESRYFIKSIADAIPNDVYV 1153

Query: 450  FG-PDGRIKLSNPAFRSLWKT-----------EENRLSPGTHIRNIAATCSRYY-NESDG 496
            +     R   +N  +                     +     +  I A     Y    D 
Sbjct: 1154 YDLEQERYVYTNTQYFKHSGFTIKEVDRGGLERIWDMIHPNDLPEIKAIFEEVYKGGEDM 1213

Query: 497  WDLFAAIITSFDDERKSLQGTLE------------LLSDSVLEYSI-IPLPNAQTMLTFV 543
            +++   +  + ++++     +L+             + D ++ + I +     Q +    
Sbjct: 1214 YEMSYRLACNLNNKKGKTHQSLDPTQLHQEGQKYVWVYDRLVPFKINVEGRVTQILGVVQ 1273

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            N+TDS   E  L +  +   KA + K  F+  +S+E+R+P+  +IG T LL         
Sbjct: 1274 NITDSKNFEEELIQAKQDAEKALQAKEQFLSTMSHEIRTPMNAVIGITHLLLEEDH---K 1330

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +Q + ++ +  S+  LL L+NDILD   ++AG +        L + +N +K +   +  
Sbjct: 1331 PEQLENLKTLKFSAENLLALINDILDYNKIEAGKISFERVDFNLREFINNIKHAFNYQAA 1390

Query: 664  ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG-STVILKAAR------- 714
            E  I ++   +  + +  + D  RL QI + +L NA+ F+ KG   V ++          
Sbjct: 1391 EKGIELEFYVERDVPNLLIGDPVRLNQILTNLLGNAIKFTDKGFVVVKVQLQETLPDKQN 1450

Query: 715  ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                    +FSVK++G  I  D   ++F RF        RR  G GLGLSI +  I   G
Sbjct: 1451 IPHQEVSLLFSVKDSGIGIAPDKQSTIFERFTQADSDTTRRFGGTGLGLSITKYLIEHQG 1510

Query: 770  GHVSISSSDEGVTTINCRI 788
            G + + S     +     +
Sbjct: 1511 GEIGLHSELGKGSEFYFFL 1529



 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 64/441 (14%), Positives = 148/441 (33%), Gaps = 65/441 (14%)

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            ++  + G    + E       L         + D +   V+ +++  + +  N +Y +  
Sbjct: 606  KLKHVQGNTRNITERKQSEFTLKQTRDYLIEVLDHIPDPVFVKNERYEFISVNEAYCELV 665

Query: 227  ETEGIVFQKAIGESRKLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKI-- 279
                   Q  +     +F  E    +    +           + V T  +G  +   +  
Sbjct: 666  G--KPREQVLLKTDYDIFASEDAHTLREKDSQVFSTGNTAEYQRVITNLNGEKRHILVKI 723

Query: 280  ---VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRYLQFHNRS 334
                   N     G+  D++++ T  ++L +    L  +  +    +F+ N+ L F N  
Sbjct: 724  DIFRDDKNQKVLVGVIRDITQQKTAEERLANNERSLKAILTSFNDIVFEINQNLIFTN-- 781

Query: 335  F----VELWEIDLAFLATN-------PSNDELLEFLRS--ANKLPEQLNWKTWKENIFSV 381
            F     +L+  D  FL          P        LR    NK  + + + + +  + S 
Sbjct: 782  FWGDKDKLFFDDQDFLGKKVTKVMDDPMRSYFASSLRHVLDNKTSKIIEYPSVQNGVKSW 841

Query: 382  YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
            Y          +LP         TS  + G   +  ++T     + +     +   + +D
Sbjct: 842  YS-----CTINYLPE--------TSERQAGVSVLVTDVTSHKTAQRRLRQSEEQLQDFLD 888

Query: 442  HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            + S  +     +G +   N  +       +        I  +           +  + + 
Sbjct: 889  NASILIQSVDLEGTVHYVNKYWCKKLGYSKAEALRTNLIDLVV---------PEEQEDYR 939

Query: 502  AIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQTMLTF---VNVTDSVRAERA 554
            A++     E  + Q +  L++      +LE SI    + + +LT     +VT+  +AERA
Sbjct: 940  ALLQHLKTEGGAQQISTRLITKDGKTLMLEGSINIRKDGKPLLTRSFLQDVTERNQAERA 999

Query: 555  LTEKNEALRKADEIKNSFVQH 575
            +        + + +  +F+++
Sbjct: 1000 IL-------EQNRLFEAFLEN 1013



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 140/416 (33%), Gaps = 37/416 (8%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-------- 224
           G+  ++ E     +KL    ++++ + ++   ++        + + N +Y +        
Sbjct: 234 GLARDITEIKEANQKLLQSEALYRAVINTQQEILCRFLPDTTLTFVNEAYCQFFNKTADD 293

Query: 225 --NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV--STLEHGNNKSYKIV 280
             NT    +V  +     +K  K+  +++   +   +    +      L   +   +   
Sbjct: 294 LINTPFLEMVPAENHASVKKRLKKIAQEKRPITQEYKVMVEDQTEDIWLRWTDYPIFDEK 353

Query: 281 RVLNSFGEAGIAIDVSK--EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
             L  F   G+ I   K  EI + +Q      IL+ L + + I D+N  L F N++ ++ 
Sbjct: 354 GQLVEFQSVGLEITDRKRVEIELQEQKQMLESILNTLPIHVFIKDENSRLLFVNQTMLDF 413

Query: 339 WEIDLAFLATNPSNDELL-----EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
                  L      +        +F      L +      W+E I       + H+  + 
Sbjct: 414 LRKKPEQLIGKTDAEIFPSKVADKFFDDDELLKKGDLPDNWEEEI-----EVDNHRHFFR 468

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
              G+ L  +   N      + FE +T   + + + +          ++ ++ + +   +
Sbjct: 469 --TGKCLIPLPMQNTHYLLGYSFE-ITPLKETQLQLHESEAKYRLIANNTNDLICLHTYE 525

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G     +P+   L   ++  +     I  +      Y        L +  +   +   K 
Sbjct: 526 GFFSYISPSVEGLTGYKDGEMMHQKVIEWVYEEDQAYVISVWHKVLKSRALQILEYRFKH 585

Query: 514 LQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRK 564
             G L       LE  + P+ +             N+T+  ++E  L +  + L +
Sbjct: 586 KNGELV-----WLETHLFPVYDDAGKLKHVQGNTRNITERKQSEFTLKQTRDYLIE 636


>gi|315920124|ref|ZP_07916364.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693999|gb|EFS30834.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 936

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 124/661 (18%), Positives = 263/661 (39%), Gaps = 63/661 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I S   E      K++   +    LF  +      +   RD+       N   
Sbjct: 289 WFSSLGNIISICIELRKAKDKVAREQTFLNNLFHFMPMGYIRMSIIRDEN------NEPC 342

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +     S    + +F + +                
Sbjct: 343 DYRVTDANEVSSTFFGHPLESYIGSLASEKHSDYLQKVDFLKEILGSNSYREKDEYFART 402

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 403 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYL 462

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E I   
Sbjct: 463 MDLNNKDLEIFGVVNKSDVIGINFFENPNVPQSIRDRVRNEDLVDFRLNYS--FEQIGGY 520

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           YK+S ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 521 YKTSRSNVIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 577

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCSRYYNESDGWDLF 500
           +   G A      ++ L N    ++ +  +N        +  +     + + E D    F
Sbjct: 578 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDIPLSEVVGVYGKMHPE-DRKRFF 630

Query: 501 AAIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVTDS 548
                    +R+  QG + +           ++ +V+  +  P  N   ++    ++T+ 
Sbjct: 631 DFYDEVKKGKRRHFQGEVRIRRPGTKNEWNWVNSNVMVTNYKPEENEIEIIGINYDITEL 690

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++     +++ +
Sbjct: 691 KETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEDV---AERQE 747

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  E ++ 
Sbjct: 748 YIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAKE-DVE 806

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + + +   +   ++DR R+ Q+ S  ++NAM F+S+GS + +      G+  F VK+ G 
Sbjct: 807 LVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYELKEGELEFYVKDTGI 865

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I ++    +F RFV         G GLGLSI +S +   GG + + S     +     I
Sbjct: 866 GIEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTI 923

Query: 789 P 789
           P
Sbjct: 924 P 924


>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
 gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
          Length = 1763

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/699 (17%), Positives = 256/699 (36%), Gaps = 68/699 (9%)

Query: 129  KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
            K    L+  G+ F +         +  + R     A            +L E     +++
Sbjct: 589  KPLHALKCGGEQFPVQIGLS---LLPADSRGQRQVA--------ASIRDLTEQLAVERQI 637

Query: 189  SNHISVFKVLFDSLDFLVWHRDQAGD--ILWANISYKKNTETEGIVFQK---------AI 237
                S F+ L  ++   V+     G   + + + +  + T      F +          +
Sbjct: 638  RESESRFRGLVSNIPGAVYRTRINGTWTMEYVSDNITELTGYPAWHFIESKKRSFGSLIL 697

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------IVRVLNSFGEAGI 291
             E  +     I   +    A E  +         G+ +              N     G 
Sbjct: 698  DEDAERCDAIISGALAEQHAFEVEYRIRHR---DGSLRWVHEKGKASYDEDGNPVWFDGS 754

Query: 292  AIDVSKEITVNDQLTHTYEILHNLTVAIA--------IFDQNRYLQFHNRSFVELWEIDL 343
              D+++     +++  + E L  +T ++           +++R   F + + +       
Sbjct: 755  LNDITESKLAQERIEQSREQLETITESVPSTVYQLVWRSERDRRFTFLSSAAMATLGF-- 812

Query: 344  AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                     +E+L+      +   + +     + +   +    T    +H P+G+   + 
Sbjct: 813  -------HRNEVLDNFELVAERIVEEDRGEIIQMLAGRHGMQWTKAFRYHFPSGELRWLE 865

Query: 404  VT---SNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
                 S  +   +W     +++ +  +ET+            D+   G+      G IK 
Sbjct: 866  AGARGSKQQDALVWNGYLMDISGRKRMETELAQSEAHFRALFDNAGIGIVNLDDRGIIKD 925

Query: 459  SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
             N  F S      + L     + ++     R         L  +   S   E + L G  
Sbjct: 926  CNGQFVSDLGISSDSLKRKQ-LADLMHPEDRALATGLYQALAESEQGSISGEWRMLDGDG 984

Query: 519  ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE---RALTEKNEALRKADEIKNSFVQH 575
            EL+  +V+  S++   +       +++ +  R +     L    E    A++ K+ F+ +
Sbjct: 985  ELMWMAVI-ASVLEEGDGGERSVVMSIANITRLKLLSDELMAAKEDADAANQAKSDFLAN 1043

Query: 576  VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            +S+E+R+P+  IIG + L   ++   L+ KQ  YVE I  +S  LL ++NDILD + ++A
Sbjct: 1044 MSHEIRTPMNAIIGMSQLCLQTE---LDRKQRNYVEKIERASKSLLGIINDILDFSKIEA 1100

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKI 694
            G + +      L+ +L ++    + K  +  + +   ++ G       D  RL Q+   +
Sbjct: 1101 GKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINL 1160

Query: 695  LSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            ++NA+ F+ +G  +  I + ARD       F+V+++G  +  +    +F  F        
Sbjct: 1161 MNNAIKFTERGEVMLSISELARDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTT 1220

Query: 751  R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            R   G GLGL+I +  + L GG + + S     +T    
Sbjct: 1221 RKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGSTFYFT 1259



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/372 (12%), Positives = 116/372 (31%), Gaps = 52/372 (13%)

Query: 114  SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND----CAIKIEGRVS----GSCAF 165
            SF + +      +          E  +F++    ++       +  +G+ S    G+  +
Sbjct: 691  SFGSLILDEDAERCDAIISGALAEQHAFEVEYRIRHRDGSLRWVHEKGKASYDEDGNPVW 750

Query: 166  LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD----FLVWHRDQAGDILWANIS 221
                  DG  +++ E+ L  +++       + + +S+      LVW  ++     + + +
Sbjct: 751  -----FDGSLNDITESKLAQERIEQSREQLETITESVPSTVYQLVWRSERDRRFTFLSSA 805

Query: 222  YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH---GNNKSYK 278
                                +   EE +  +I   A       T +   H   G  +  +
Sbjct: 806  AMATLGFHRNEVLDNFELVAERIVEEDRGEIIQMLAGRHGMQWTKAFRYHFPSGELRWLE 865

Query: 279  IVRVLNSFGEA----GIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQF 330
                 +   +A    G  +D+S    +  +L     H   +  N  + I   D    ++ 
Sbjct: 866  AGARGSKQQDALVWNGYLMDISGRKRMETELAQSEAHFRALFDNAGIGIVNLDDRGIIKD 925

Query: 331  HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
             N  FV              S+D L     +    PE     T      +  +      +
Sbjct: 926  CNGQFVS---------DLGISSDSLKRKQLADLMHPEDRALATGLYQALAESEQGSISGE 976

Query: 391  TWHL-PNGQTLHVIVTSN----PRGG---TIWMFENLT-------VQVDLETKYNTLVKV 435
               L  +G+ + + V ++      GG    +    N+T         +  +   +   + 
Sbjct: 977  WRMLDGDGELMWMAVIASVLEEGDGGERSVVMSIANITRLKLLSDELMAAKEDADAANQA 1036

Query: 436  QGETIDHLSEGV 447
            + + + ++S  +
Sbjct: 1037 KSDFLANMSHEI 1048



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 112/315 (35%), Gaps = 24/315 (7%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVF-KVLFDSL--DFLVWHRDQAGDILWANISYK 223
           R+   +G+  E+A  + K  +++  +    + L DS    F       +    + +++  
Sbjct: 353 RLQKPEGVVREIATLSHKFNEMAEVLEEREQALLDSRGNRFATLIDGMSDKSFYCSMTPD 412

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------------- 269
            N +      +K +G S ++ K + ++   S++  E+N+      L              
Sbjct: 413 GNIDQVSAGVEKVLGISPEVLKRKYQRLFSSNAINEQNWQFMEMALRGEAVPPHQVEMAG 472

Query: 270 EHGNNKSYKIV-RVLNSFGEAGIAIDV--SKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
             G+ +   +  + L       I++++  +           +  +L     A+ I D++ 
Sbjct: 473 ADGSLRRLDLFMQPLLDDEGQLISVEMLFNDVTEQFSAAAWSNAVLEAAPEAMLIVDESG 532

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            L F N    EL+      +     +  + E  R  ++   QL  +  ++ + +  K   
Sbjct: 533 QLVFSNSRCQELFGYSGEEMLNLNIDALIPENERHGHQGKRQLFIEGGRDKVMANGKPLH 592

Query: 387 THK---DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
             K   + + +  G +L +   S  +        +LT Q+ +E +           + ++
Sbjct: 593 ALKCGGEQFPVQIGLSL-LPADSRGQRQVAASIRDLTEQLAVERQIRESESRFRGLVSNI 651

Query: 444 SEGVAVFGPDGRIKL 458
              V     +G   +
Sbjct: 652 PGAVYRTRINGTWTM 666


>gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella
           oneidensis MR-1]
 gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella
           oneidensis MR-1]
          Length = 1188

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 102/509 (20%), Positives = 201/509 (39%), Gaps = 29/509 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
                  +      +L ++  AI   D+       N++   +     + +    S D   
Sbjct: 401 ATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSEDLTS 460

Query: 354 -ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            E+   +R+        + +  K+     Y+          L +   L          G 
Sbjct: 461 PEMGIRIRAE-------DAQILKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQGL 513

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I ++ ++T + +   +     +     +D + +G+  +  D    + NP++ S+   + N
Sbjct: 514 IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYYSMLGYKPN 573

Query: 473 RLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL----QGTLELLSDSVLE 527
                   I  +     R   E          + +++ E + L         L    V+E
Sbjct: 574 EFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNSSYHWVLSRGRVVE 633

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           ++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  I
Sbjct: 634 FTTDGQP-KRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAI 692

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG   L + +   SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L      L
Sbjct: 693 IGMLQLAQRT---SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPL 749

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
           + +L+      A K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G 
Sbjct: 750 DKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGE 809

Query: 707 TVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            + L               F V++ G  I +D  + +F+ F        R   G GLGLS
Sbjct: 810 -IELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLS 868

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +  +++ GG + + S     +T +  I
Sbjct: 869 ISKHLVSMMGGKMQVQSELGVGSTFSFTI 897



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 386 RLDKLVARRTE--RLKDATERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 443

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 444 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDAQILKDRTPLRYQEKVELAGKPVLLDTLK 500

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 501 LPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIIC 560

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK-----TWKENIFSVYKSSE 386
           N S+  +            S  + L       ++ E  N          E  F +   + 
Sbjct: 561 NPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNS 620

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           ++   W L  G+ +       P+   +   +++T     E     L   Q   + +L
Sbjct: 621 SYH--WVLSRGRVVEFTTDGQPK-RMVGTHKDITRHKSNEVAL--LEAKQDAELANL 672



 Score = 41.1 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 15/206 (7%)

Query: 360 RSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE     W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 346 QEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 399

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 400 DATERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 452

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 453 LSSEDLTSPEMGIRIRAEDAQILKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQG 512

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 513 LIAVWRDVTREYESAEQLRLSEERYH 538


>gi|260171812|ref|ZP_05758224.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 926

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 124/661 (18%), Positives = 263/661 (39%), Gaps = 63/661 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I S   E      K++   +    LF  +      +   RD+       N   
Sbjct: 279 WFSSLGNIISICIELRKAKDKVAREQTFLNNLFHFMPMGYIRMSIIRDEN------NEPC 332

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +     S    + +F + +                
Sbjct: 333 DYRVTDANEVSSTFFGHPLESYIGSLASEKHSDYLQKVDFLKEILGSNSYREKDEYFART 392

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 393 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYL 452

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E I   
Sbjct: 453 MDLNNKDLEIFGVVNKSDVIGINFFENPNVPQSIRDRVRNEDLVDFRLNYS--FEQIGGY 510

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           YK+S ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 511 YKTSRSNVIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 567

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCSRYYNESDGWDLF 500
           +   G A      ++ L N    ++ +  +N        +  +     + + E D    F
Sbjct: 568 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDIPLSEVVGVYGKMHPE-DRKRFF 620

Query: 501 AAIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVTDS 548
                    +R+  QG + +           ++ +V+  +  P  N   ++    ++T+ 
Sbjct: 621 DFYDEVKKGKRRHFQGEVRIRRPGTKNEWNWVNSNVMVTNYKPEENEIEIIGINYDITEL 680

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++     +++ +
Sbjct: 681 KETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEDV---AERQE 737

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  E ++ 
Sbjct: 738 YIKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAKE-DVE 796

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + + +   +   ++DR R+ Q+ S  ++NAM F+S+GS + +      G+  F VK+ G 
Sbjct: 797 LVLDNPLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYELKEGELEFYVKDTGI 855

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I ++    +F RFV         G GLGLSI +S +   GG + + S     +     I
Sbjct: 856 GIEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTI 913

Query: 789 P 789
           P
Sbjct: 914 P 914


>gi|254456902|ref|ZP_05070330.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
 gi|207085694|gb|EDZ62978.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
          Length = 1175

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 108/513 (21%), Positives = 222/513 (43%), Gaps = 36/513 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +++    ++L      L    + ++I D    + + N  F E+ +     L     N  +
Sbjct: 278 AEKENALNELHFQKFALDEHAI-VSITDAKGKILYINDKFCEISQFQRGELIGK--NHRV 334

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGG- 411
           ++    +N+ P+ L  + W+          E         +G    V  T  P     G 
Sbjct: 335 IK----SNEHPDSLFKEMWETISSGSVWHGEIKN---RKKDGSFYWVKSTIVPFVDDSGK 387

Query: 412 ---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               I +  + T Q +LE ++           D+++EG+ V    G +  SN +  +L +
Sbjct: 388 PFQYISIRTDTTKQKELEERFQDQANFLNSITDNITEGLMVIDDTGNLIYSNKSASTLLE 447

Query: 469 TEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGT---LELLSDS 524
             ++ L       ++         ++ D     + ++ S D   K+  G    +E+ + S
Sbjct: 448 QRDDELLDSNFYSDVLVENENITLSKFDSLMKKSGVLHSDDVLFKTKNGKNIDIEMSAVS 507

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           VL ++   L     ++ F +++D    + +L E      +A + K++F+ ++S+ELR+PL
Sbjct: 508 VLRHNKKSL-----IVVFKDISDRKILQDSLIEAKLIAEEASKTKSNFLANMSHELRTPL 562

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG + +         + +   Y++ I  S  ILL ++NDILD + ++AG + +    
Sbjct: 563 NGIIGMSYIALNQ---DTDPRIKNYLDKIHTSGNILLKIINDILDFSKIEAGKLDVESIE 619

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
             L+D+L ++   I  K +E ++ + +  D    +  + D  R+ QI   +LSN++ F+ 
Sbjct: 620 FNLDDMLKKLSDFIHLKAYEKDLELVIFKDQNTPTSVIGDPLRINQILLNLLSNSIKFTD 679

Query: 704 KGST-VILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
            G   + ++A      +   +F++++ G  + ++    +FN F         +  G GLG
Sbjct: 680 HGEIEISVEALILDAADSKLVFTIRDTGVGMTKEELDRIFNSFSQADSTIARRYGGTGLG 739

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I +  I L  G++S+ S     TT    +P 
Sbjct: 740 LTITKQLIELMDGNISVESEKGVGTTFKVELPL 772


>gi|218441882|ref|YP_002380211.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174610|gb|ACK73343.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 955

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 125/665 (18%), Positives = 260/665 (39%), Gaps = 55/665 (8%)

Query: 166 LRILSLD------GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           +R+++L       GI   ++       +L ++  +++ + +++D+ +W     G  ++A+
Sbjct: 154 IRLVNLSQPEHFLGIIRNISNCKRVELQLRHNEHLYRAIGETIDYGIWVCQPDGRNIYAS 213

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSY 277
            S+               G    L  ++ ++ + +    +   +F +        + + +
Sbjct: 214 ESFLNLVGLTQEECS-NFGWGNVLHPDDAQETISAWKECSRIGSFWDREHRYRGVDGQWH 272

Query: 278 KI----VRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIF--DQN 325
            I    V V ++ G+    AGI +D+S+     ++L  + E    L  +  + I+     
Sbjct: 273 PILARGVPVRDANGDIICWAGINLDISRLKQTEEKLRESEERFRILADSAPVLIWMNGFE 332

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
              +F N+++++ +   L+ +     +    ++L   +    Q+  KT+KE      +  
Sbjct: 333 GGCEFVNKAYLDFFGKTLSEVQGLAWS----DYLHPDDASYIQVYLKTFKE------RQP 382

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGE 438
              +  +   +GQ   +   +NPR        G I    +++   + E       +    
Sbjct: 383 FRAQGRFKRADGQYRWLESRANPRFSSTGEFLGYIGTSSDISEIKEAEEALLQREQRFST 442

Query: 439 TIDHLSEGVAVF-----GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
             + + + + V+     G  G     N             L     +R+I  T      E
Sbjct: 443 LFNGMEDWILVYPVTEEGHPGNFIEVNEQACKKLGYSREELLQ-MSVRDIVNTLF-INAE 500

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            +   L +A     +   ++  G    +  S   +++  LP  Q +   +     +  ER
Sbjct: 501 INFKKLLSAKHLVLESVHRTKDGENIPVEVSATLFTLNGLPTVQAICRDITERKQIEQER 560

Query: 554 A-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                      E    A+ IK+ F+  +S+ELRSPL  I+G+  LL T  L        +
Sbjct: 561 ENLLIQEQAAREVAESANRIKDEFLAVLSHELRSPLNPILGWAKLLNTHTLEPAT--HQK 618

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  ++ +   L+ D+LD++ +  G + L   ++ L  +++   ++I       NI+
Sbjct: 619 ALSIIERNAQLQAELIEDLLDVSRILRGKLTLKIVSVNLGFIIDSAIETIRLAAQAKNIQ 678

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I+   D  +G  + D  RL QI   +LSNA+ F+  G  V ++           V + G 
Sbjct: 679 IQTKLDPNIGEVLGDPARLQQIVWNLLSNAVKFTPTGGKVEIELNSLGNWAKIRVTDTGK 738

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS-SDEGVTTIN 785
            I  D    +F+ F        R   G+GLGL+I    + LHGG +   S  +    T  
Sbjct: 739 GITSDFLPHIFDYFRQADSTTTRIFGGLGLGLAIARHLVELHGGTIKAESLGEGQGATFI 798

Query: 786 CRIPS 790
            ++P 
Sbjct: 799 VKLPL 803


>gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1044

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 136/682 (19%), Positives = 268/682 (39%), Gaps = 71/682 (10%)

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
            A +R        +   +   + + L+     ++ +      +    D  G I++AN  +
Sbjct: 247 LALVRFALKRPYQTLFRQLAQEREALARSEEKWRNILVHTPQIGISLDPKGRIVFANEYF 306

Query: 223 KKNT--ETEGIVFQK-----AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            K T  E E ++ +         E R+  +E     M    +L  +  E     ++G   
Sbjct: 307 LKLTGWEQEEVLGRDWFEVCIPVEIRESTREFFDSVMAGGQSLAYSTHENEIIGKNGARH 366

Query: 276 S--------YKIVRVLNSFGEAGIAIDVSKE----ITVNDQLTHTYEILHNLTVAIAIFD 323
           +        +    +       G  +D+++       + +       ++ NL ++I  FD
Sbjct: 367 TIGWANAVAFDSSGLPTDVTSLG--VDLTERKHAAEVLVESRNLYQSLVDNLPLSIMTFD 424

Query: 324 QNRYLQFHNRSFVELW---EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           ++  + + N+  ++ +    +D  +      ++  L  L SA   PE          +  
Sbjct: 425 RDGKINYINQFHIDSFAKGRLDKEYFLGRALHE--LPGLVSAGIGPELK-------EVLQ 475

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLVK 434
               S        L  G +    V + P        G I M E++T +   E       +
Sbjct: 476 GRPVSLPSLFIPRLAAGGSAWQSVKAIPLFKDGIFSGGILMREDITARKMSEEAVRQSEE 535

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-------HIRNIAATC 487
                ++  ++G+  +         +P + ++   E               H  ++ A  
Sbjct: 536 RLALALEVTNDGLWDWDCVSGSTYFSPHYYAMLGYEPGEFEANYATWRSLIHPDDVLAVE 595

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                      +F      F  + KS Q    +    V+E         + + T V+VT+
Sbjct: 596 DEVSRHVASGQVFE---IEFRMKSKSGQWQWIMARGRVVEKDEQD-HAVRMVGTHVDVTE 651

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              AE       EA   A+  K+ F+ ++S+E+R+PL  I+G   LL+T+   SLN +Q 
Sbjct: 652 RKNAEYVALRAKEAAEAANRAKSEFLANMSHEIRTPLNGIMGMLQLLQTT---SLNHEQL 708

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y      S++ L +L++DILDL+ V+AG M +      L   L++     A+   ++ +
Sbjct: 709 EYSSMAVQSTSRLTSLLSDILDLSRVEAGKMPIRPEVFDLRKKLHQSIDLFASIALQSGV 768

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFI-- 720
            ++   D  L    + D  RL Q+ + ++ NA  F+ +G  V ++A    AR+       
Sbjct: 769 ELRHHFDDTLPQHVIGDPLRLQQVLTNLIGNAFKFTERG-FVSVEAYPLPARNENQLRIF 827

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V ++G  IP++    +F  F   +  +  Q +G GLGLSI +  + L GG+++ISS  
Sbjct: 828 FEVSDSGCGIPDEALGLLFEPFSQVSQGYTRQYQGAGLGLSICKRLVGLMGGNMAISSEV 887

Query: 779 EGVTTINC--------RIPSKE 792
              T+I          ++P+++
Sbjct: 888 GVGTSIYFCVTLDKALKLPAQD 909


>gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 371

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 176/367 (47%), Gaps = 17/367 (4%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           + K+     + +++G+ +   DGR    N         + + L   T + +I        
Sbjct: 1   MDKIYETVFNSVNDGILIITLDGRFLEVNQITCDDLGYQRHELLQMT-VMDI-------- 51

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQ---TMLTFVNV 545
              +  ++    +     +   +  T+ +  D  L   E +I P+        +    N+
Sbjct: 52  TPPEFREMARENVIGKMKQGGGIVETISICKDGSLVPIELNIHPIEYNGAPAILAVARNI 111

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  +AE A+     A   A++ K+ F+ ++S+ELR+PL +IIGF+D++     GSLN  
Sbjct: 112 TERKKAEEAMLSAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSLNEL 171

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +++  + ++   LLN++NDIL  + ++ G M+L+ S   +++ +NE++  +     E 
Sbjct: 172 QKKFISNVISNGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPIASEK 231

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI +K   D  + +  AD  +  QI   +++NA+ F+++G  V ++    +     SVK+
Sbjct: 232 NIELKFNIDIGMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIRGEISDDFVHISVKD 291

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I  D    +F  F        R   G GLGL+IV+ ++ +HGG V + S     +T
Sbjct: 292 SGIGISPDDQNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEVGKGST 351

Query: 784 INCRIPS 790
              R+P+
Sbjct: 352 FGFRMPT 358


>gi|20090134|ref|NP_616209.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
 gi|19915115|gb|AAM04689.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
          Length = 1456

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 132/709 (18%), Positives = 258/709 (36%), Gaps = 63/709 (8%)

Query: 114  SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG--RVS---GSCAFLR- 167
            SF +++     + +  A +      ++F+    + +   I+ +G  R+    G   F R 
Sbjct: 767  SFLSYVHPEDRVLVDDAVK------EAFNGKTYSIDHRIIRADGKERIVHEQGEVVFDRE 820

Query: 168  --ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
               + + G   ++ E  L  K L       + L ++    +      G I   N S    
Sbjct: 821  NVPVQMKGTVQDVTERKLAEKTLELASKYNRSLIEASLDPLVTIGADGKITDVNSS---T 877

Query: 226  TETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVST-LEHGNNKSYKIV--- 280
                G    + IG      F E  K +       +K         + H +     ++   
Sbjct: 878  ETITGYSRDELIGTDFSDYFTEPEKAKEGYRHVFQKGLVRDYPLEVLHRDRHITHVLYNA 937

Query: 281  -----RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
                  +    G    A D+++     +++      + +   A+     +  +   N+  
Sbjct: 938  SVYRDEIGEVIGVFAAARDITELKKAEEKIKTLVSAVESSDDAVITMSLDGMITSWNKGA 997

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWH 393
              ++                 E L     + E  N K   + +    K  E   H +T  
Sbjct: 998  ERVYGYPAE------------EILGKKMSVLEPANLKGEIKQLIERIKQGEGINHYETVR 1045

Query: 394  LP-NGQTLHVIVTSNP---RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            L  +   + + V  +P     G I     +  ++T +   E             ++   +
Sbjct: 1046 LKKDSTLVDISVALSPVFDDSGKIIALSAIARDITERKKAEEALRLSNIYNRSLLEASLD 1105

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
             +   GPDG+I   N A   +       L  GT   N   T      E          + 
Sbjct: 1106 PLVTIGPDGKITDVNKATEQITGYSRGEL-IGTDFTNYF-TEPEKAKEGYQQVFRKGAVL 1163

Query: 506  SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKNEAL 562
             +  E +   G++  +   +   SI    + Q +  F    +VT+  +AE+ L  K E L
Sbjct: 1164 DYALEIQHRNGSVTPV---LYNASIYRDESGQVIGVFAAARDVTELKKAEKILELKLEEL 1220

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             ++      F    S++L+ PL  I  +  LL+    G L+ +  +Y+ +    ++ + +
Sbjct: 1221 ARSKADLEQFAYVSSHDLQEPLRMIASYLQLLQRRYQGELDERADKYIYFAVDGASRMQS 1280

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            L+ND+L+ + V     +  +       +LN V   +   + EN   +   S   L   +A
Sbjct: 1281 LINDLLEFSRVTTKARE--FEPTDCESILNYVLSDLEVSIKENEATVSYDS---LPEIMA 1335

Query: 683  DRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  +L Q+F  ++SNA+ F S +   + + A +++  + FSV++NG  I     + +F  
Sbjct: 1336 DGTQLTQVFQNLISNAIKFRSKEAPKIHVSAEKEDDKWRFSVQDNGIGINPKYSEKIFEV 1395

Query: 742  FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F     R +  G G+GLSI +  I  HGG + + S     +T    +P+
Sbjct: 1396 FKRLHKREEYPGTGIGLSICKKIIERHGGDIWVKSEPGRGSTFYFTLPA 1444



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 81/245 (33%), Gaps = 20/245 (8%)

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRMISSSALEKNFCE 264
           W +           +Y  +    G      +    K  K+  E +  ++ + A + +   
Sbjct: 469 WDKRADLVRSMGIQAYACHPLHVGETTIGTLSFGTKSRKDFKEDELALMKTVADQVSVAI 528

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
                E   +++Y+ ++V +   +A           +         +  N    IA FD+
Sbjct: 529 ERKRAEEALSEAYENLQVQSEELQAQSEELNEAYELLRKSEKRFRTLAENSPDVIARFDR 588

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
                + N +  E +      +    +N EL          PE + +  W+ +  +V+ S
Sbjct: 589 QNRHLYVNPAATEPYGRSPEEIIGK-TNSEL-------GMDPELVTF--WEGHYQTVFAS 638

Query: 385 SETHKDTWHL--PNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLVKVQ 436
            +T K  +H   P+G+  +      P          + +  ++T   + E +        
Sbjct: 639 GKTEKMEFHYISPSGKEYYFSTRIVPEFVDGEVTSVLAISRDITDIKEAEIELKEARDNL 698

Query: 437 GETID 441
            + ++
Sbjct: 699 KKLVE 703



 Score = 45.7 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 17/193 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   E       K    T D + + +A+   + RI  +N A  +              
Sbjct: 195 SKRKRAEETALQAAKDWKYTFDAVPDLIAILDTEYRIVRANRAMAAKLGVTPEEC----- 249

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--- 536
              +  TC    + +D    F        DE +      E         S+ PL ++   
Sbjct: 250 ---VGLTCYHAIHGTDEPPSFCPHRQLLKDELEHTTEVCEDCLGGCFLVSVSPLYDSKGN 306

Query: 537 --QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              ++    ++T+  + E  L E  E +    ++++  +   + EL++    +    + L
Sbjct: 307 LIGSVHVARDITERKQTEETLFEAYENI----QVQSEELHAQAEELQAQNEELHAQAEEL 362

Query: 595 KTSKLGSLNSKQS 607
             +    + SK+ 
Sbjct: 363 MKTNEALIESKKR 375



 Score = 37.2 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 15/152 (9%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              E ++ TL        ++  + +A F    R    NPA    +      +   T+   
Sbjct: 566 RKSEKRFRTLA-------ENSPDVIARFDRQNRHLYVNPAATEPYGRSPEEIIGKTNSEL 618

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----T 538
                   + E     +FA+  T    E+           +      I+P          
Sbjct: 619 GMDPELVTFWEGHYQTVFASGKT----EKMEFHYISPSGKEYYFSTRIVPEFVDGEVTSV 674

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           +    ++TD   AE  L E  + L+K  E + 
Sbjct: 675 LAISRDITDIKEAEIELKEARDNLKKLVEKRT 706


>gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 933

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 115/643 (17%), Positives = 234/643 (36%), Gaps = 77/643 (11%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGESRKLF---- 244
           + + + +S ++ +      G IL  N + ++       E  G    + + +  ++     
Sbjct: 47  LQQAILNSANYTIISTTPDGIILTFNAAAQRWLGYTAEEVIGKTTPEIVHDKNEVVKVAQ 106

Query: 245 --------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GE 288
                     E    +  + A      E   T    +   + ++  +           G 
Sbjct: 107 ELSQELGVTIEPGFEVFVAKARLGQVEEREWTYIRKDGSRFPVLLSVTPLYDAEENITGF 166

Query: 289 AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GI  D++     E  + +       +     V I   D +    F N     L    L 
Sbjct: 167 LGIGSDITARKLAEAALRESEYRYATLAQTAPVGIFRNDASGRCIFANERACNLIGSPLE 226

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +      +  ++ L   ++L      + W + I          +  +  PN     VI 
Sbjct: 227 DILG----EGWVQSLHPDDRL---RIVREWNQAIKQNL--PFKAEYRFRHPNNVINWVIS 277

Query: 405 TSNPRGGT-------IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            + P  G+       I    ++  +   E +   L +     ++   EG++     G   
Sbjct: 278 QAIPERGSDGEVTGYIGTMTDINDRKRAEEELLHLSQ----ALESAVEGISQLDTQGHYI 333

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             NPA+  +       +        I    +   +  D   + AA      + +  ++  
Sbjct: 334 KVNPAYAQITGYTPEEM--------IGMEWTSTVHPDDQEKMMAAYRQMLKNGKVEMEAR 385

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                 S     ++ +         +     ++            R+ + +K+ FV  VS
Sbjct: 386 AMRKDGSAFYKQVVMVKAYNQQQECIGHYCFMK-------DISDRREVERLKDEFVSVVS 438

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT+I G  DLL +  + + +    + +   + ++  L+ L+NDILD+  +++G 
Sbjct: 439 HELRTPLTSISGALDLLASKVVPAGSEDAQRMLNIAANNTDRLVRLINDILDIERIESGK 498

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +++        DL+ +  + +     +  I++ +          AD  R++Q+F+ ++SN
Sbjct: 499 IQITPQACNAADLMTQSVEVMEELAEQGGIQLAM--SPLSAHLWADPDRIIQVFTNLISN 556

Query: 698 AMDFSSKGSTVILKAARDNGD---------FIFSVKNNGSSIPEDMCKSVFNRF--VSNA 746
           A+ FS  G+TV + A                +F VK+ G  IP D  +S+F RF  V  +
Sbjct: 557 AIKFSPAGATVWVTAKIPEKSELEKFPNPVILFEVKDQGRGIPADKLESIFERFGQVDAS 616

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              Q+ G GLGL+I  S +  HGG +   S+    +T    +P
Sbjct: 617 DSRQKGGTGLGLAICRSILQHHGGRIWAESTLGEGSTFFFTLP 659



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 72/500 (14%), Positives = 164/500 (32%), Gaps = 77/500 (15%)

Query: 76  LTENNCLTIVWDGKD----ETPEIIGQLHQRIDIPQTDTDLLS------FENWLKFHHYI 125
                   + +  ++     TPEI+   ++ + + Q  +  L       FE ++      
Sbjct: 71  FNAAAQRWLGYTAEEVIGKTTPEIVHDKNEVVKVAQELSQELGVTIEPGFEVFVAKARLG 130

Query: 126 KLSKA-TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
           ++ +     +RK+G  F ++           E  ++G           GI S++    L 
Sbjct: 131 QVEEREWTYIRKDGSRFPVLLSVT--PLYDAEENITG---------FLGIGSDITARKLA 179

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKL 243
              L      +  L  +    ++  D +G  ++AN   ++     G   +  +GE   + 
Sbjct: 180 EAALRESEYRYATLAQTAPVGIFRNDASGRCIFAN---ERACNLIGSPLEDILGEGWVQS 236

Query: 244 FKEEIKKRMIS--SSALEKNFCETV-STLEHGNNKSYKIVRVLNSF--------GEAGIA 292
              + + R++   + A+++N          H NN    ++              G  G  
Sbjct: 237 LHPDDRLRIVREWNQAIKQNLPFKAEYRFRHPNNVINWVISQAIPERGSDGEVTGYIGTM 296

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFL 346
            D++      ++L H  + L +    I+  D   +    N ++ ++        I + + 
Sbjct: 297 TDINDRKRAEEELLHLSQALESAVEGISQLDTQGHYIKVNPAYAQITGYTPEEMIGMEWT 356

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
           +T   +D+          L    N K   E        S  +K        Q + V   +
Sbjct: 357 STVHPDDQEKMMAAYRQML---KNGKVEMEARAMRKDGSAFYK--------QVVMVKAYN 405

Query: 407 NPRG--GTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPD 453
             +   G     ++++ + ++E            +  T +      +D L+  V   G +
Sbjct: 406 QQQECIGHYCFMKDISDRREVERLKDEFVSVVSHELRTPLTSISGALDLLASKVVPAGSE 465

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
              ++ N A  +  +           +R I         ES    +      + D   +S
Sbjct: 466 DAQRMLNIAANNTDRL----------VRLINDILDIERIESGKIQITPQACNAADLMTQS 515

Query: 514 LQGTLELLSDSVLEYSIIPL 533
           ++   EL     ++ ++ PL
Sbjct: 516 VEVMEELAEQGGIQLAMSPL 535


>gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 642

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 105/500 (21%), Positives = 200/500 (40%), Gaps = 44/500 (8%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +  +  + IA+          N +  +++      L   P+ D +           E
Sbjct: 13  FEHVYKSAPIGIALVTIEGSWISVNPAACKMFGYTDEELMAQPATDYI---------YSE 63

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL----HVIVTSNPRGGT----IWMFENL 419
            +N K           S+ + +  +   +G  +    HV +  + +  T    I    ++
Sbjct: 64  CINNKDKLLQSLDEASSTISVEKQFVHRDGNVIWASIHVSLVRDDQDQTPLFFISQIVDI 123

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T     E K    ++       +  + +  F  +GRI   N     L   +   L  GT 
Sbjct: 124 TDSKVAEQKLQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKIPEL-IGTK 182

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEY--SIIPLPN 535
           I N+    +            A +++S  D   + +G   +       +E   ++ P+  
Sbjct: 183 ISNLIGERN-----------LARVLSSAADYVAAEKGINCIHHKDGHQVEVLATLAPIVI 231

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
               + F  +   +  ++ L  + EA  K ++ K+ F+  +S+E+R+P+  +IG TDL+ 
Sbjct: 232 HGKNVGFYIIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLIL 291

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++   L+ +Q +YV+ I  S T LLN++NDILD + +++G  +L   T  L   L+E  
Sbjct: 292 ETE---LDEEQQEYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETL 348

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
             I  K  + NI +       +      D  +L Q+   +LSNA+ F+  G+  + ++  
Sbjct: 349 NMILPKALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCV 408

Query: 714 RDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
           RD  +     FSV + G  +P +    +F  F    H    Q  G GLGL+I +  + L 
Sbjct: 409 RDQANSELIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLM 468

Query: 769 GGHVSISSSDE-GVTTINCR 787
           GG +    +     +     
Sbjct: 469 GGDIWYERNPNQQGSVFTFT 488


>gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 642

 Score =  329 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 105/500 (21%), Positives = 198/500 (39%), Gaps = 44/500 (8%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +  +  + IA+          N +  +++      L   P+ D +           E
Sbjct: 13  FEHVYKSAPIGIALVTIEGSWISVNPAACKMFGYTDEELMAQPATDYI---------YSE 63

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL----HVIVTSNPRGGT----IWMFENL 419
            +N K           S+   +      +G  +    HV +  + +  T    I    ++
Sbjct: 64  CINNKDKLLRSLDEASSTIAVEKQLVHKDGNVIWASIHVSLVRDDQDQTPLFFISQIVDI 123

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T     E K    ++       +  + +  F  +GRI   N     L   +   L  GT 
Sbjct: 124 TDSKVAEQKLQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKIPEL-IGTK 182

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEY--SIIPLPN 535
           I N+    +            A +++S  D   + +G   +       +E   ++ P+  
Sbjct: 183 ISNLIGERN-----------LARVLSSAADYVAAEKGINCIHHKDGHQVEVLATLAPIVI 231

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
               + F  +   +  ++ L  + EA  K ++ K+ F+  +S+E+R+P+  +IG TDL+ 
Sbjct: 232 HGKNVGFYIIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLIL 291

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++   L+ +Q +YV+ I  S T LLN++NDILD + +++G  +L   T  L   L+E  
Sbjct: 292 ETE---LDEEQREYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETL 348

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
             I  K  + NI +       +      D  +L Q+   +LSNA+ F+  G+  + ++  
Sbjct: 349 NMILPKALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCV 408

Query: 714 RDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
           RD  +     FSV + G  +P +    +F  F    H    Q  G GLGL+I +  + L 
Sbjct: 409 RDQANSKLIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLM 468

Query: 769 GGHVSISSSDE-GVTTINCR 787
           GG +    +     +     
Sbjct: 469 GGDIWYERNPNQQGSVFTFT 488


>gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 603

 Score =  329 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 92/472 (19%), Positives = 196/472 (41%), Gaps = 24/472 (5%)

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH- 388
           F +R+  +++E+D             L+ LR    + E  +     E    + +    + 
Sbjct: 142 FWSRALYDIFEVDPDTYD--------LDRLRGFEMIAE-KDRSLMMETHRRLMEQGTDYD 192

Query: 389 -KDTWHLPNGQTL--HVIVTSNPRGGTI----WMFENLTVQVDLETKYNTLVKVQGETID 441
            + T     G+     V+ T+  + G I     +  ++  +  +E +      +    + 
Sbjct: 193 VEVTVCSGKGRVFPARVMGTALRQEGRIVQIYGLMYDVAQRRHVEKELRYQQFLLRMFLQ 252

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
                V V    GR  L +P F +L       L   T  +      +R +++SD   +  
Sbjct: 253 SSPAIVYVKDLQGRYLLVSPTFENLVGKRSVELVGKTDAQIFGVEDARRFSDSDNQLIQE 312

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
               S++++     G+ +                        ++T+  R ++ L    EA
Sbjct: 313 QQPRSYEEKLTFHDGSQKYYLSEKFPLRDEDGHLIAIAGVSTDITELHRYQQELERAKEA 372

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                  K+ F+ ++S+E+R+P+ +I+G ++LL  ++   L+  Q Q+V  ++ +S+ LL
Sbjct: 373 AEAGTRAKSEFLANMSHEIRTPMNSIMGMSELLLDTE---LSPDQRQFVTILTRASSSLL 429

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           NL+NDILDL+ +++G+M +      + + +    + +  +  E  + +K+  D ++    
Sbjct: 430 NLINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAVEKKLDLKLEIDPQVPEKI 489

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D  R  Q+   ++ N + F++ G  V ++   +       VK+ G  +  +  + +F 
Sbjct: 490 LGDATRFQQVLINLIGNGLKFTTHGE-VRVQLKVNGHQLWVGVKDTGIGMAPEQMQGLFT 548

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF        RR  G GLGLSI +  +   GG + ++S     +     +P 
Sbjct: 549 RFSQGDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTSEIGQGSVFYFTLPL 600



 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 68/192 (35%), Gaps = 15/192 (7%)

Query: 132 EKLRKEGQSFDLVAE--TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189
            +L ++G  +D+     +            +      RI+ + G+  ++A+     K+L 
Sbjct: 182 RRLMEQGTDYDVEVTVCSGKGRVFPARVMGTALRQEGRIVQIYGLMYDVAQRRHVEKELR 241

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
               + ++   S   +V+ +D  G  L  + +++       +          ++F  E  
Sbjct: 242 YQQFLLRMFLQSSPAIVYVKDLQGRYLLVSPTFENLVGKRSVEL--VGKTDAQIFGVEDA 299

Query: 250 KRMISSS-----ALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGE----AGIAIDVSKE 298
           +R   S        +    E   T   G+ K Y  +   + +  G     AG++ D+++ 
Sbjct: 300 RRFSDSDNQLIQEQQPRSYEEKLTFHDGSQKYYLSEKFPLRDEDGHLIAIAGVSTDITEL 359

Query: 299 ITVNDQLTHTYE 310
                +L    E
Sbjct: 360 HRYQQELERAKE 371


>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 1721

 Score =  329 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 155/901 (17%), Positives = 308/901 (34%), Gaps = 169/901 (18%)

Query: 19   LFSCKIAVFGTIAGMLLTTIIPIIL--LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLL 76
            L   +  +     G+LLT  + +++   IR+R  L   V +    L E      +Y  ++
Sbjct: 670  LHPARAGLAAAFTGLLLTAAVTLVMVGYIRRRRQLEGLVAQRTRSLRESE---KRYAQIV 726

Query: 77   TENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL---SFENWLKFHHYIKLSKATE- 132
               N         DE             I   D   L    F   +   H+  +++    
Sbjct: 727  ENANDTIFT---TDENGRFSFVNPVAQKISGYDETELLGRHFTMLIPPEHHEAVARFYGI 783

Query: 133  --------------KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
                           LRK+G+    V   QN   I   GRV+G     R         ++
Sbjct: 784  QFTEKTPNTYYEMPMLRKDGKR---VWLGQNTGLILKNGRVAGFQVVAR---------DI 831

Query: 179  AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
             +       L   +   + +  +    +   D  GDI + N + ++     G   Q+A+G
Sbjct: 832  TDRKQAEAALRAEVMRNRTITGTAQDAIVMIDPKGDISFWNPAAERMF---GYTGQEALG 888

Query: 239  ESRKLFKEEIKKRMISSSA-----LEKNFCETVSTLE----HGNNKSYKI------VRVL 283
            ++        +       A            T  TLE      + + + I      +R+ 
Sbjct: 889  QNLHRLLPPQRYHAAHLKAFLQFQQTGMGDATGKTLELAALDKDGREFPIELSLSALRLD 948

Query: 284  NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI-----AIFDQNRYLQFHNRSFVEL 338
            + +   GI  D++      D+L   +E +H L  ++      +   +R +   N +   +
Sbjct: 949  DGWHAVGIMRDITDRKRAEDKLRSAHERIHALMESVQAGIILVRKSDRVIVEANPAAARI 1008

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             ++ +  L   P  +                  +  +  +F + +  +  + + +  +G+
Sbjct: 1009 ADVSVDALVGTPCQEHFC-------------PAEIGRCPVFDLGQEVDNSERSVYRADGK 1055

Query: 399  TLHVI--VTSNPRGGTIWMFE---NLTVQVDLETKYNTLVKVQGET-----------IDH 442
             + ++  VTS    G  ++ E   ++T     E +     ++Q              +D 
Sbjct: 1056 HVPILKTVTSLSLDGEDYLLESFVDITDLKRAEEELRFQTRLQELLTEISTTYISLPLDR 1115

Query: 443  LSEGV--------AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            +   V           G D          + +        + G   R        +    
Sbjct: 1116 MDVAVENSLGEMGIFVGADRVYLFDYDFEKQVCNNTHEWCAAGIAPRIDTLQAIPFSAIP 1175

Query: 495  DGWDLFAAIITSFDDERKSL---QGTLELLS-DSVLEYSIIPLPNAQTM----------- 539
               +      T + D+ K+L    G   LL    V     +PL + +             
Sbjct: 1176 QWVNAHRQGKTLYIDDIKALTPEDGVRRLLEPQGVQSMIAVPLMDNERCLGFAGFDSISA 1235

Query: 540  ----------------LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                               VN+      E++L +  +  R A + K+ F+ ++S+E+R+P
Sbjct: 1236 LRHYSDAEKKLLTVFAQMLVNIRKRHEIEQSLHQATQRARAATQAKSEFLANMSHEIRTP 1295

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            +  I+G T LL  ++   L  +Q ++ E +  +   LL ++NDILD + ++AG ++L   
Sbjct: 1296 MNGILGMTSLLLETE---LTGEQRRFAEIVRNNGDALLEIINDILDFSKIEAGKLELEMV 1352

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFS 702
               LN LL  +  +++ + H+  I +    +         D  RL QI + ++ NA+ F+
Sbjct: 1353 DFSLNKLLEGLAGALSVQAHKKGIELIYDIEPGTPSHVRGDPGRLRQILANLMGNAIKFT 1412

Query: 703  SKGST-------------------------------VILKAARDNG---DFIFSVKNNGS 728
             KG                                 V +  + ++      +FSVK+ G 
Sbjct: 1413 EKGEVFVQIKTGEAVAADTVAETEAGAPDVKSTEPEVAVSVSDNDAPAVTLLFSVKDTGI 1472

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  +  +++F  F        R   G GLGL+I      + GG + ++S+    +T   
Sbjct: 1473 GISPEKIETIFESFTQADSSITRNFGGTGLGLTISRKLAGMLGGKLWVTSNPGAGSTFAF 1532

Query: 787  R 787
             
Sbjct: 1533 T 1533



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 72/520 (13%), Positives = 160/520 (30%), Gaps = 56/520 (10%)

Query: 91   ETPEIIG-QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
            E P ++   L  R   PQ    + + E  L     + ++     L   G+ F +     +
Sbjct: 611  ERPAVVDMALLDRYGQPQRLAAIQANE--LPSSTGLAVTYFMPML---GKVFSVTVY-PD 664

Query: 150  DCAIKIEGRVSG-SCAFLRILSLDGI----------YSELAET-TLKCKKLSNHISVFKV 197
               +K+    +G + AF  +L    +            +L      + + L      +  
Sbjct: 665  AEFVKLHPARAGLAAAFTGLLLTAAVTLVMVGYIRRRRQLEGLVAQRTRSLRESEKRYAQ 724

Query: 198  LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS--- 254
            + ++ +  ++  D+ G   + N       +  G    + +G    +         ++   
Sbjct: 725  IVENANDTIFTTDENGRFSFVNPV---AQKISGYDETELLGRHFTMLIPPEHHEAVARFY 781

Query: 255  ----SSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVS----KEITV 301
                +      + E     + G           I++     G   +A D++     E  +
Sbjct: 782  GIQFTEKTPNTYYEMPMLRKDGKRVWLGQNTGLILKNGRVAGFQVVARDITDRKQAEAAL 841

Query: 302  NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLR 360
              ++     I      AI + D    + F N +   ++       L  N       +   
Sbjct: 842  RAEVMRNRTITGTAQDAIVMIDPKGDISFWNPAAERMFGYTGQEALGQNLHRLLPPQRYH 901

Query: 361  SANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLHVIVTSNPRG-GTIWMFEN 418
            +A+        +T   +      + +   KD    P    L +       G   + +  +
Sbjct: 902  AAHLKAFLQFQQTGMGDATGKTLELAALDKDGREFP--IELSLSALRLDDGWHAVGIMRD 959

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRL--- 474
            +T +   E K  +  +     ++ +  G+ +     R I  +NPA   +     + L   
Sbjct: 960  ITDRKRAEDKLRSAHERIHALMESVQAGIILVRKSDRVIVEANPAAARIADVSVDALVGT 1019

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                H           ++     D     +   D +   +  T+  LS    +Y      
Sbjct: 1020 PCQEHFCPAEIGRCPVFDLGQEVDNSERSVYRADGKHVPILKTVTSLSLDGEDY------ 1073

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                + +FV++TD  RAE  L  +        EI  +++ 
Sbjct: 1074 ---LLESFVDITDLKRAEEELRFQTRLQELLTEISTTYIS 1110


>gi|167625694|ref|YP_001675988.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           halifaxensis HAW-EB4]
 gi|167355716|gb|ABZ78329.1| PAS/PAC sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 1203

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 120/603 (19%), Positives = 230/603 (38%), Gaps = 50/603 (8%)

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           W   +     + N +  +          + I    K+         + S   E+N   T 
Sbjct: 341 WQTRR----SFVNPA-SRLLTHLEECSAEPIKPPEKITVGWAPWFQLVSRIFEENKQYTR 395

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
              E  N +  K+V             D ++       L     +L ++  AI   D+  
Sbjct: 396 HLAEQ-NRRLDKLVAQRTER-----LKDTTERREQEYALLR--SLLDSIPEAIVFKDKEG 447

Query: 327 YLQFHNRSFVELWEIDLAFLATN------PSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
                N+S   +     + +         P    L         L ++   + ++E +  
Sbjct: 448 RYLGCNKSAERMLGFSESEMIGQFSDALAPDEQSLRIRAEDERVLTDRTPLR-YQEKVEL 506

Query: 381 VYKSS--ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
             K    +T K  ++   G+ L          G I ++ ++T + +   +     +    
Sbjct: 507 AGKPVLLDTLKIPFYNRRGELL----------GLIAVWRDVTREYESAEQLRLSEERYHL 556

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGW 497
            +D + +G+  +  D    + NPA+ S+   + N        I  +     R   E    
Sbjct: 557 AMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKVNEFPALVSTIDELIHPDDRIRVEEYRE 616

Query: 498 DLFAAIITSFDDERKSLQGTLE----LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
              A  + ++D E + L    E    L    V+E++    P  + + T  ++T   R E 
Sbjct: 617 QYLANPVGAYDIEFRMLGKNGEYHWLLSRGRVVEFTPKKQP-KRMVGTHKDITRHKRNEV 675

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ E  +    A+  K+ F+ ++S+E+R+ +  IIG   L + +   SL  +Q  Y+E  
Sbjct: 676 AMLEAKQDAEMANLYKSEFLANMSHEIRTRMNAIIGMLQLAQRT---SLTPQQKDYLEKA 732

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++NDILD + ++AG ++L      L+ +L+      A K  E  + + + +
Sbjct: 733 GFSAHSLLRIINDILDFSKIEAGKLELERIGFPLDKVLDHALDINALKAQEKGVELLLYA 792

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
               G  +  D  RL Q+   +LSNA+ F+  G  + L               F V++ G
Sbjct: 793 PVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGE-IELGCEDVGERDHRITLKFWVRDTG 851

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ++   ++F+ F        R   G GLGLSI +  +++ GG + + S     +T +
Sbjct: 852 IGISKEQQATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEMGVGSTFS 911

Query: 786 CRI 788
             I
Sbjct: 912 FTI 914



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 93/308 (30%), Gaps = 35/308 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G  L  N S ++  
Sbjct: 403 RLDKLVAQRTE--RLKDTTERREQEYALLRSLLDSIPEAIVFKDKEGRYLGCNKSAERML 460

Query: 227 ETEGIV----FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                     F  A+    +     I+                      G       +++
Sbjct: 461 GFSESEMIGQFSDALAPDEQSL--RIRAEDERVLTDRTPLRYQEKVELAGKPVLLDTLKI 518

Query: 283 L------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFHN 332
                     G   +  DV++E    +QL  + E  H    A+   ++D   +      N
Sbjct: 519 PFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICN 578

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK------TWKENIFSVYKSSE 386
            ++  +    +       S  + L       ++ E            +      + K+ E
Sbjct: 579 PAYYSMLGYKVNEFPALVSTIDELIHPDDRIRVEEYREQYLANPVGAYDIEFRMLGKNGE 638

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD-----LETKYNTLVKVQ--GET 439
            H   W L  G+ +       P+   +   +++T         LE K +  +      E 
Sbjct: 639 YH---WLLSRGRVVEFTPKKQPK-RMVGTHKDITRHKRNEVAMLEAKQDAEMANLYKSEF 694

Query: 440 IDHLSEGV 447
           + ++S  +
Sbjct: 695 LANMSHEI 702


>gi|239905559|ref|YP_002952298.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
 gi|239795423|dbj|BAH74412.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 2025

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 131/644 (20%), Positives = 265/644 (41%), Gaps = 37/644 (5%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLD----FLVWHRDQAG-----DILWANISYK 223
            G+  ++ E     ++L  +   ++ LF+S++     L   RD  G      +L  N +Y 
Sbjct: 1240 GLVLDITERKRLERELHENEGRYRSLFESMNEGLCLLEMVRDPDGQPVDYRVLDVNPAYG 1299

Query: 224  KNTETEGIVFQKAIGE-SRKLFK-EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
            +     G+   +A+G   R++F  ++     +    LE     T  ++     K +++  
Sbjct: 1300 R---ILGVAPDQAVGRLVREIFNLKQAPNLDVYVPLLETRQPATFESMLPELGKHFRVSA 1356

Query: 282  V-LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFV 336
              L       +  DV+           +      L     + +   DQ+  +   NR F 
Sbjct: 1357 FALQGERFVAMFQDVTALWEARQAEERSALRFRELFGFSPLPMGYMDQHGRILDLNRRFT 1416

Query: 337  ELWEIDLAFLATNPSNDELLEFL--RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
            EL+      L   P+ D+  E      A +      W    +N  +  +   + +     
Sbjct: 1417 ELFGYT---LEDIPTLDDWREKAYPDPAYRREVIAQWDAALDNRRADTREIPSAEYRVTC 1473

Query: 395  PNGQTLHVIVTSNP-RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
             +G+   V++T      G +  F ++T +   ET      +     ++H    +A+F  D
Sbjct: 1474 KDGRIRDVLITGMTTEHGLLACFVDITERKRFETHLAEREEQLRLFVEHAPAAIAMFDRD 1533

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
                  +  +   +K +E  +   +H   I     + +       L  AI  +  D    
Sbjct: 1534 MTYLAVSRRWIDDYKLDERAVLGRSHY-EIFPEIPQRWKRIHQQCLAGAIERADSDPFVR 1592

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            L G  + +S  +  +          +    +VT   +AE A+ E   A   A+  K+ F+
Sbjct: 1593 LDGNTQFVSWEIRPWLTPEGAIGGIVCFSEDVTLRKQAETAMLEAKNAAEAANRAKSEFL 1652

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             ++S+E+R+PL  ++G   LL ++   +L+++Q +Y +    +   L  L++DILDL+ +
Sbjct: 1653 ANMSHEIRTPLNGLLGMLQLLHST---TLDAEQEEYAQMAIRAGNRLTRLLSDILDLSRI 1709

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
            +AG + +  +   L +++  ++++ A    E  +++   ++  L    V D  R+ QI  
Sbjct: 1710 EAGRLPIVAAPFRLANVVQALRETFAPFCKEKRLQLVFETEAALPEWLVGDELRIRQILF 1769

Query: 693  KILSNAMDFSSKGST-VILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             ++ NA+ FS+ G   V +      A  +   +F+V +NG  IP+D   SV   F+    
Sbjct: 1770 NLVGNALKFSTNGDVLVTMSRLPGVAAKHARILFTVADNGIGIPDDKLDSVCEPFIQAEG 1829

Query: 748  R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 ++G GLGL+I +  ++L  G +++ S     TT    +P
Sbjct: 1830 SYTRSQQGAGLGLTITKRLVDLMHGTMALESEAGVGTTAYVTLP 1873



 Score = 54.9 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 119/409 (29%), Gaps = 44/409 (10%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANIS-YKKNTETEGI 231
            + +   E  +  ++        + + D     VW  RD     +  N + Y       G 
Sbjct: 866  VAARTRELEVARQEAERRAVELEAIMDQAPAAVWITRDTEARTIIGNQASYHVLRMAPGS 925

Query: 232  --------VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
                    V  +A+    +L  +E+  +  +           +   +  +   +     L
Sbjct: 926  NVSKTLEGVPYRALRNGYELPLQELPMQRATRGEHVIGQEVDLVFADGQSRTIFGNAAPL 985

Query: 284  NSF-----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVE 337
             +F     G  G+ +D+++  +   +     ++       + I   ++      N SF  
Sbjct: 986  RNFLGEIYGAVGVFLDITQLKSAQAEALRWQQLFERSEFGLVIVRVRDNTFLAVNPSFAR 1045

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
                +   L   P               PE       +    +     E  +      +G
Sbjct: 1046 ERGYEAEELVGQPLF----------MLYPEAALPGLREHIAHADATGHELFEAMHMRKDG 1095

Query: 398  QTLHVIV--------TSNPRGGTIWMFENLTVQVDLETKY-NTLVKVQGETID-HLSEGV 447
             T  V+V           P+    +   ++T +  +E +    L   +  T + +LS   
Sbjct: 1096 STFPVLVEITVLMDDEGRPQTRLAYCL-DITRRKVVEQQLHRALAAAKAGTWEWNLSTNE 1154

Query: 448  AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
             V+ P+          R     +   LS     R+ AA         +        + + 
Sbjct: 1155 NVWSPETYRLYELDPDRHPASYDSWLLSVHPDDRDRAAHDVAEMARQEAPLAVEYRLNTH 1214

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            D   + L    EL  D       +       +   +++T+  R ER L 
Sbjct: 1215 DGRERWLLSLGELQRD-------MHGTGTAYLGLVLDITERKRLERELH 1256


>gi|124009958|ref|ZP_01694623.1| MmoS [Microscilla marina ATCC 23134]
 gi|123984042|gb|EAY24420.1| MmoS [Microscilla marina ATCC 23134]
          Length = 670

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/550 (19%), Positives = 234/550 (42%), Gaps = 24/550 (4%)

Query: 258 LEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEIL 312
            +K F + +    +       +  R + + G++   +    D++K       L     ++
Sbjct: 122 KQKAFEDVLHWHNNAQETVLDVKTRFIGNNGQSTYLMLTFEDITKRFQRERTLDRLSFVV 181

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            ++   + + +++  +++ N SF ++   +L  +   P    L +FL+  +   E +   
Sbjct: 182 KHINDFVIVTNEHGQIEWVNDSFNKVTGYELREIEGVP----LTKFLQQKDLNKEAIKRI 237

Query: 373 TWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIV-TSNPRGGTIWMFENLTVQVDLET-- 427
             K     + +       KD     N  T+ V+  T+  +   + +  N T     E   
Sbjct: 238 EAKIEKNEIVEEELQNRRKDGLPYWNKLTIRVMYDTAAHQKKYLSIHTNTTEYKAHEKYL 297

Query: 428 -KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +    ++ Q   ID  +  + +   +G I  +N AF  + K EE+ L    H    +  
Sbjct: 298 SQLINELQHQQFAIDQ-AALITITDRNGYITHANEAFCRVSKYEEHELLGQKHSLVNSGY 356

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--QTMLTFVN 544
             R + +     +   ++   +   ++  GT   +  +++ +      +   + +    +
Sbjct: 357 HPRSFFKDMWGTVRKGMLWRGEIHNRAKDGTFYWVDVTIVPFLYKDEGHDPYKYLFIRFD 416

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+   AE+ L    +   +A+ +K++F+ ++S+E+R+PL  I+G   L++   + S N 
Sbjct: 417 ITERKNAEKQLIVAKDKAEEANRLKSNFLANMSHEIRTPLNGILGVVQLIE---IESDNE 473

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
               Y   I  S   LLN +N ILDL+ ++A   ++++  + + +L++ + QS+    + 
Sbjct: 474 TMLHYAHLIGQSGQRLLNTINGILDLSRIEANRAEVSWEQVNIIELVSALVQSLEVLANS 533

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            NI + +  +      + D   L Q+ + +L NA+ F+ +G  V L+   +N      V 
Sbjct: 534 RNIYLNIEFNLAQKQVLIDPYLLEQVLNNLLGNAIKFTERGG-VTLRLNDENNCLTIEVI 592

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I E   K +F  F   +   +RR  G GLGL+I +  + L GG + + S     +
Sbjct: 593 DTGIGIEEHFLKEIFEPFKQESTGMERRFQGSGLGLAIAKKIVELMGGDIKVHSKKNLGS 652

Query: 783 TINCRIPSKE 792
                 P ++
Sbjct: 653 CFTVIFPEQK 662



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 92/293 (31%), Gaps = 41/293 (13%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA----IGESRK 242
           +    +     +   ++  V   ++ G I W N S+ K T  E    +        + + 
Sbjct: 169 QRERTLDRLSFVVKHINDFVIVTNEHGQIEWVNDSFNKVTGYELREIEGVPLTKFLQQKD 228

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG------IAIDVS 296
           L KE IK+        E    E  +  + G     K+   +     A       I  + +
Sbjct: 229 LNKEAIKRIEAKIEKNEIVEEELQNRRKDGLPYWNKLTIRVMYDTAAHQKKYLSIHTNTT 288

Query: 297 KEITVNDQLTHTYEILHNLTVA------IAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +       L+     L +   A      I I D+N Y+   N +F  + + +   L    
Sbjct: 289 EYKAHEKYLSQLINELQHQQFAIDQAALITITDRNGYITHANEAFCRVSKYEEHELLGQK 348

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-- 408
            +      L ++   P       W      +    E H       +G    V VT  P  
Sbjct: 349 HS------LVNSGYHPRSFFKDMWGTVRKGMLWRGEIHN---RAKDGTFYWVDVTIVPFL 399

Query: 409 --RGGT-----IWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
               G      +++  ++T + + E +            +++   + ++S  +
Sbjct: 400 YKDEGHDPYKYLFIRFDITERKNAEKQLIVAKDKAEEANRLKSNFLANMSHEI 452


>gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1235

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 112/664 (16%), Positives = 245/664 (36%), Gaps = 62/664 (9%)

Query: 168 ILSLDGIYSELAETTLK-----------CKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           +L++    +EL ET  +               +    + + + D+   L+  +D     +
Sbjct: 158 LLTIQDQTAELQETIKQLKLQIQQQQVIATNATQEKHLLQAILDNCPALICAKDSQNRYI 217

Query: 217 WANISYKKNTET-EGIVFQKAIGE-SRKLFKEEIKKRMISSSA----LEKNFCETVSTLE 270
             N    +  E       Q+ +G+ +  LF   I +++  S        +      + + 
Sbjct: 218 MVN----RQCEIFLNRPAQEILGKTNYDLFPTTIAQKLQESDQKVFDSGRVQQTHQNIVN 273

Query: 271 -HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD 323
            HG  + +  V         +      I  D+++      +L      + + T AIAI  
Sbjct: 274 YHGKIRQFISVNFPIFNQNRHILAVCNIGSDITEGKRQEQRLRLLESAVSHTTDAIAIAQ 333

Query: 324 ------QNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPE-QLNWKTWK 375
                  +  + + N++F  L        +  NP+  +  +      K  E  L+     
Sbjct: 334 CNPEKTTDSQIVYINKAFTNLTGYQPEDIIGKNPNILQGTDTDEQQLKRVEVALSQGQSI 393

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
           +     Y+ + +     +  +     V   +      +++  ++T +    +      + 
Sbjct: 394 QVELINYRQNRSK----YWADLSISPVTDDTGKVSHFVFVQRDITSRKLKTSTLQREREQ 449

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
             + I +    VA+     R    +  +   +      L   +H   I    S    E  
Sbjct: 450 LQQIITNAPVAVAILDCSMRYIAYSDRWLQEYHLPPESLVGRSHY-EIFPHISETCTEVY 508

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              +   +I+  +D      G+      ++  +  +       ++    + + V+A  A 
Sbjct: 509 RRAIAGEVISCSEDNMIYPDGSHGYFRWAIHPWYTLNQEIGGVVIATYPIDELVKAREA- 567

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                   +   +K+ F+ ++S+E+R+P+  ++G T LL  ++   L++KQ  +V+ I  
Sbjct: 568 ------ALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTE---LDTKQKDFVQAIRT 618

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  LL ++NDILD + ++A  ++L      L + L  +   +A +     I +  I D 
Sbjct: 619 SANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDR 678

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNG 727
            +  ++  D  RL Q+   ++SN + F+  G  V L+ +R             + V++ G
Sbjct: 679 NVPRYLRGDPGRLRQVLLNLMSNGIKFTPAGE-VTLRVSRPPNYDINAPLILRYEVQDTG 737

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +    +F  F        R   G GLGL I +  +++ GG + + S     +   
Sbjct: 738 IGIPPESHGRLFEAFSQVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFW 797

Query: 786 CRIP 789
             +P
Sbjct: 798 FTLP 801


>gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 837

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 131/643 (20%), Positives = 243/643 (37%), Gaps = 47/643 (7%)

Query: 176 SELAETTLKCKKLSNHISVFKVL-FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +  +   + + L    S ++ L   SLD LV   D  G    AN + +      G+   
Sbjct: 61  RQARQRERQDRALRESESRYRSLFMGSLDALVLASD-DGRCFCANPAAEALF---GLTEA 116

Query: 235 KAIGESRKLFKEEIKKRMIS----SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--GE 288
           + +   R    +    R+       +A  +   E     + G     ++         G+
Sbjct: 117 EIVQAGRAGLFDPDDPRLPRLWQSRAATGQARGEVRFRRKTGELFEAEVSVSACEDFHGQ 176

Query: 289 AGIAI---DVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
               +   D+S     E  +  ++     ++      IAIF Q+  +   NR F  +   
Sbjct: 177 PCFCLALRDISARKHTEEALQKEIQRRRALMEVSNDGIAIFSQDHRILEANRRFAAMLGY 236

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
               + +  S     +F  +   L E      +++        ++T +      +G    
Sbjct: 237 PPEAMTSLSS----WDFEAA---LTEDQIRSAFRDFTHI----NQTFETRHRRRDGTVYD 285

Query: 402 VIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL-SEGVAVFGPDGR 455
             V+++          I +  ++T +   E +     +      D++ +  V  +  D  
Sbjct: 286 AEVSASGARIGDERLIITICRDITDRKRTEERLRQSEERFRSLFDNVETVAVQGYDRDRN 345

Query: 456 IKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +   NPA  +L+    E  L        I      Y  E     +         + R S 
Sbjct: 346 VLYWNPASEALYGYSREEALGQKLETLIIPPAMRPYVVEDIRRWIEEGRPIPAGELRLSR 405

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   E+   S          + +     +++T++    + L    +A   A+  K  F+ 
Sbjct: 406 QDGSEVPVFSSHVLQQTGSGDCELFCLDIDLTETEAMRKELIASKDAAVAANRAKTEFLA 465

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I G   LL T+   S + +Q +YV     S+  L +L++DILDL+ ++
Sbjct: 466 NMSHEIRTPLNGIYGMLQLLATT---SPDDEQQEYVTAALKSAKRLSSLLSDILDLSKIE 522

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSK 693
           A  + +        +L+  +K        E  +RIK  + DG  G  V D  R+ QI   
Sbjct: 523 ANKLDICRKAFPFQELVQSLKDIFVLSAREKALRIKFSVEDGIPGHLVGDEIRVRQILFN 582

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           ++ NA+ F+  G   V      ++ D     +FSVK+ G  I ED    VF  F      
Sbjct: 583 LIGNAIKFTETGGVAVKACLLPESADGRVRILFSVKDTGIGIREDKVHYVFEPFAQADGS 642

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +++G GLGL+IV+  + +  G + I S     TTI+  +P
Sbjct: 643 YIREQQGAGLGLTIVKRVVEMLDGILCIDSKFGSGTTISVALP 685


>gi|319408254|emb|CBI81907.1| two-component sensor histidine kinase [Bartonella schoenbuchensis
           R1]
          Length = 772

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 211/497 (42%), Gaps = 42/497 (8%)

Query: 329 QFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            + +R+  E+   +    L +      ++         P   N+    + + S  K    
Sbjct: 284 VYWSRAMYEMLGYVPQDALLSISQITAIIN--------PTDTNFFDLAQELMSGEKKHID 335

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                   +G  + +   +    G     + +  +++ Q  L  +         + I+++
Sbjct: 336 INIPMRHADGHYIWMRFRAEVTEGEEPHLVGISFDISEQRQLAEQTAQADLRIRDAIENI 395

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS----RYYNESDGWDL 499
           SE   ++  +GR+ +SN  F       +  L  G     + A        Y  + DG   
Sbjct: 396 SESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIQRATVEAMARPAISEYLLKEDGTGN 455

Query: 500 FAAIITSFD------DERKSLQGTLELLSDSVLE---------------YSIIPLPNAQT 538
             +I  + D      +ER++  G L      + E               +S I       
Sbjct: 456 LTSIRQTADGCWLKINERRTQDGGLVCTGTDISELKQQQEKFKNSEKSLFSFIQELKRAR 515

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                  T+  +  ++L  + E    A++ K+ F+ ++S+ELR+PL  I+GF+D++  S 
Sbjct: 516 GNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANISHELRTPLNAILGFSDIMLQST 575

Query: 599 LGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            G L S++  +Y+  I  S T LL L+NDILD++ ++AG   L+   I L  +++E  ++
Sbjct: 576 FGPLGSQRYKEYMRDIHNSGTHLLTLINDILDMSKIEAGRFTLDCKNIDLGPIISEAVRT 635

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +  E  + +      KL + V D + + QIF  ++SNA+ F+  G  + + A +   
Sbjct: 636 LTPQAQEKKVSVTENIAPKLHAEV-DCRAIRQIFLNLISNAVKFTPSGGNIDVCAFQKEN 694

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
           + IF +K+ G  IP+   K +   F    +       G GLGL+I  S + LH G + I+
Sbjct: 695 NLIFKIKDTGVGIPQAAIKKLGQPFEQVENQFTKTHTGSGLGLAISRSLVKLHKGKLEIT 754

Query: 776 SSDEGVTTINCRIPSKE 792
           S +E  TT+   +P ++
Sbjct: 755 SKEEKGTTVTITMPIQQ 771



 Score = 67.3 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 27/280 (9%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIV 232
            +   +   +  +    +++ +      D+ +     +G + W+   Y+       + ++
Sbjct: 248 RAHNMDLVSEKNQNRIDMAMMRGRCGLWDWNM----ASGRVYWSRAMYEMLGYVPQDALL 303

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGE--- 288
               I                   + EK   +    + H +     +  R   + GE   
Sbjct: 304 SISQITAIINPTDTNFFDLAQELMSGEKKHIDINIPMRHADGHYIWMRFRAEVTEGEEPH 363

Query: 289 -AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             GI+ D+S++  + +Q         + + N++ +  ++D    L   N  F E   I  
Sbjct: 364 LVGISFDISEQRQLAEQTAQADLRIRDAIENISESFVLWDSEGRLVMSNSKFCEYAAIPK 423

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             L +      +    R A      ++    KE+      S           +G  L + 
Sbjct: 424 QMLQSGIQRATVEAMARPA------ISEYLLKEDGTGNLTS------IRQTADGCWLKIN 471

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                 GG +    +++     + K+    K     I  L
Sbjct: 472 ERRTQDGGLVCTGTDISELKQQQEKFKNSEKSLFSFIQEL 511


>gi|212633456|ref|YP_002309981.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1203

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 103/494 (20%), Positives = 201/494 (40%), Gaps = 21/494 (4%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +L ++  AI   D++      N+S   +       +      D L+   ++     E
Sbjct: 429 LRSLLDSIPEAIVFKDKDGRYLGCNKSAERMLGYTENEIVGQ-YADALIPSEQAVRIRAE 487

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             + +     +   Y+          L +   +      +   G I ++ ++T + +   
Sbjct: 488 --DERVLANRVPLRYQEKVDFAGKPVLLDTLKIPFYNRRDELLGLIAVWRDVTREYESAE 545

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAAT 486
           +     +     +D + +G+  +  D    + NPA+ S+   + N        I  +   
Sbjct: 546 QLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKSNEFPALVSTIDELIHP 605

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLE----LLSDSVLEYSIIPLPNAQTMLTF 542
             R   E    +     I ++D E + L  + E    L    V+E++    P  + + T 
Sbjct: 606 DDRIRVEEHRNEYLNNPIGTYDVEFRMLGKSGEYHWLLSRGRVVEFTPTNQP-KRMVGTH 664

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T   R E A+ E  +    A+  K+ F+ ++S+E+R+P+  IIG   L + +   SL
Sbjct: 665 KDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRT---SL 721

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+      A K 
Sbjct: 722 TLQQKDYLEKADFSAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKA 781

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            E  + + + +    G  +  D  RL Q+   +LSNA+ F+  G  + L           
Sbjct: 782 QEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTKSGE-IELGCEDVGERDHR 840

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
               F V++ G  I ++    +F+ F        R   G GLGLSI +  +++ GG + +
Sbjct: 841 ITLKFWVRDTGIGISKEQQAILFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQV 900

Query: 775 SSSDEGVTTINCRI 788
            S     +T +  I
Sbjct: 901 ESEMGVGSTFSFTI 914



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 107/309 (34%), Gaps = 37/309 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G  L  N S ++  
Sbjct: 403 RLDKLVAQRTE--RLKETTERREEEYALLRSLLDSIPEAIVFKDKDGRYLGCNKSAERML 460

Query: 227 ETEGIVFQKAIGE-SRKLFKEE----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + +G+ +  L   E    I+       A              G       ++
Sbjct: 461 ---GYTENEIVGQYADALIPSEQAVRIRAEDERVLANRVPLRYQEKVDFAGKPVLLDTLK 517

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 518 IPFYNRRDELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIIC 577

Query: 332 NRSFVELWEI-DLAFLATNPSNDELL---EFLRSANKLPEQLNWK--TWKENIFSVYKSS 385
           N ++  +       F A   + DEL+   + +R      E LN    T+      + KS 
Sbjct: 578 NPAYYSMLGYKSNEFPALVSTIDELIHPDDRIRVEEHRNEYLNNPIGTYDVEFRMLGKSG 637

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD-----LETKYNTLVKVQ--GE 438
           E H   W L  G+ +    T+ P+   +   +++T         LE K +  +      E
Sbjct: 638 EYH---WLLSRGRVVEFTPTNQPK-RMVGTHKDITRHKRNEVAMLEAKQDAEMANLYKSE 693

Query: 439 TIDHLSEGV 447
            + ++S  +
Sbjct: 694 FLANMSHEI 702



 Score = 38.4 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 1/129 (0%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D + E +     DGR    N +   +    EN +  G +   +  +       +
Sbjct: 428 LLRSLLDSIPEAIVFKDKDGRYLGCNKSAERMLGYTENEI-VGQYADALIPSEQAVRIRA 486

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           +   + A  +     E+    G   LL    + +          +  + +VT    +   
Sbjct: 487 EDERVLANRVPLRYQEKVDFAGKPVLLDTLKIPFYNRRDELLGLIAVWRDVTREYESAEQ 546

Query: 555 LTEKNEALR 563
           L    E   
Sbjct: 547 LRLSEERYH 555


>gi|288941879|ref|YP_003444119.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897251|gb|ADC63087.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1253

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 131/776 (16%), Positives = 282/776 (36%), Gaps = 69/776 (8%)

Query: 57  ETYSFLSEICDQLS-KYHSLLTENNCLTIVWDGKDETPEIIGQLH-QRIDIPQTDTDLLS 114
           +  S  +    +   ++ +L       TI+ D  D +     Q+   ++     +   L 
Sbjct: 5   KLRSIAATEAARQDVEFRTLFEVYPDATILIDPADGSTLEFNQVSCAQLGYTSEEFARLR 64

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQ-SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
             ++        ++    ++  +G+  F+     ++   I +   VS      R + L  
Sbjct: 65  ISDYEVQESAEDVAAHIRRVLTQGRDEFETQHRHKDGRVIDVSVAVSCLDLGERPVLLAV 124

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIV 232
           +  +++      ++        ++  ++    +W  D Q   ++W    ++         
Sbjct: 125 VR-DISRRKQDERQAHQAEERLQLATEAAKLGIWDYDIQQDRLIWDERMFQLYGLEPREF 183

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKSYK-IVRVLNSF 286
             + +  S  +  E +++      AL ++         +     G  ++ + + RV +  
Sbjct: 184 GYRFVDWSTLVLPESLQRVKADFQALVESGRPFDVKFQIRRPSDGEIRTLRGLARVTHDD 243

Query: 287 G-----EAGIAIDVSKEITVNDQLTHTYEILHNLTVA--IAIF--DQNRYLQFHNRSFVE 337
                   G+  D+++   V  ++    + L  L        +  D      + +     
Sbjct: 244 QGRAIRVVGVNEDITEFQAVQREILDREQRLQQLAEQSRTVTWEVDAQGRYTYLSPVAEL 303

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS---ETHKDTWHL 394
           +W      +       +L          PE    + ++E IF         + H +    
Sbjct: 304 VWGYTPDEIVGRRYFYDL---------HPEP-GREAFREAIFQAIAQQLKFQGHVNPIIR 353

Query: 395 PNGQTLHVIVTSNP---RGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            +G+ + V   + P     G +  +     ++T     +       +      +     V
Sbjct: 354 KDGRVIWVSTNAIPVTDDRGLLLGYRGSDVDITEAKYAKEALEAEKERFRGIFEKTGSAV 413

Query: 448 AVFGP-----DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           AV+ P     D      NPA   + +T    +     I      C     E    D+   
Sbjct: 414 AVYQPTDDSQDFIFTDYNPAAERIDRTTRQAV-----IGRCLTECFPAAIEMGLVDMLRR 468

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +  +   +        +    +  E +I  L + + +  + ++T+  RA+ A        
Sbjct: 469 VNLTGQTQYMPSAYYQDDRLQAWRENTIFKLSSGEVVAVYNDLTEIKRAQEA-------A 521

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A   K+ F+ ++S+E+R+P+  +IG +DLL  +    L++KQ  Y+  I  SS +LL 
Sbjct: 522 ERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLET---PLDAKQRDYLGKIRESSRLLLG 578

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFV 681
           ++NDILD + ++AG + L+     L+DLL++++     +    +I +        L    
Sbjct: 579 IINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEADARDIELIFDLAVSSLHRVE 638

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL Q+   +LSNA+ F+ +G  V+    L A   +    F V++ G  I  +    
Sbjct: 639 GDALRLRQVLINLLSNAVKFTEQGQVVLSIRQLDAGTASARLRFEVRDTGIGIAPEQQTR 698

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIP 789
           +F  F        RR  G GLGL I +  +   GG + + S+    +       +P
Sbjct: 699 LFKPFSQADSSTTRRYGGTGLGLVISQKLVEKMGGTLVLESTPGAGSRFYFDLTLP 754


>gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
 gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
          Length = 1297

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 117/596 (19%), Positives = 223/596 (37%), Gaps = 46/596 (7%)

Query: 217  WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            WA   +  +     +  Q+ +    K F  + +      S         V   +HG    
Sbjct: 573  WAKRVHPDDLARVKVELQELLNTGSKEFFSDFRIIRQDGSLCWLQSRARVFYDDHGQ--- 629

Query: 277  YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHN 332
                         G+ IDV++       L  +   L  L     + I   D    + F N
Sbjct: 630  --------PLRMVGVNIDVTERKQAEAALQQSEARLKQLLQSSIIGIIEADSE-RINFAN 680

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKD 390
             +F+++       L T          LR  +  P + + +  +  +  V  +      + 
Sbjct: 681  DAFLKIVGYTQEDLLTGK--------LRWQDMTPLEYS-ELDQAKVQEVINAGFCIPFEK 731

Query: 391  TWHLPNGQTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             +   +G  + +      ++S+P     ++  +LT +   E        +     D + +
Sbjct: 732  EYIRKDGSRVPILLGAARLSSSPLTWVCFIL-DLTARKQAEAALQQSELMFRTLADTMPQ 790

Query: 446  GVAVFGPDGRIKLSNPAF--------RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
               +  P+G  +  N  +                 ++     ++          +    +
Sbjct: 791  MFWITQPNGYHEYFNQRWYDYTGTTLEQTQGEGWQKILHPDDVQRTIEQWQDSLDTGKDY 850

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            D+   +  + D E +   G    L D   +               + + +  +A      
Sbjct: 851  DIEYRLRRAADGEYRWHLGRAFPLRDENGQMVKWFGSCTDIHDQKLAIEERAQAWEQERA 910

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                L +A+ +K+ F+  VS+ELRSPL  I+G+  LLK+ KL +L + Q+  +E I  ++
Sbjct: 911  ARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQA--LEVIERNA 968

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +   L++D+LD++ +  G + LN  T+ L   +    +++       +I I+      +
Sbjct: 969  KLQAGLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAESKSIHIQTDLTASV 1028

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                 D  RL Q+   +LSNA+ F+ +G  + +K  R        V++ G  I  D    
Sbjct: 1029 CRVEGDPNRLQQVVWNLLSNAVKFTPEGGEIEVKLERVGSLAHIQVRDTGKGISLDFLPY 1088

Query: 738  VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
            VF RF        R   G+GLGL+IV   + LHGG V ++S  EG  TT   ++P 
Sbjct: 1089 VFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGSVQVTSPGEGLGTTFTVKLPL 1144



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 99/299 (33%), Gaps = 22/299 (7%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A + S+ + +     +   +L      I IFD     ++ N    ++    +  ++    
Sbjct: 109 AREASE-VQLAKLKVNYRHLLETANEGIWIFDSEGKTEYVNHQLAQMLGYSVEQISK--- 164

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-- 409
              +  FL    ++ E   W   +       K     +   H  +G +L VIV+ +    
Sbjct: 165 -CSIFNFLEPQARV-EIEQWLEQQHKYHQQTKQQFDLRLQRH--DGASLWVIVSLSSILD 220

Query: 410 -----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                   I M  ++T       K +   +     +D L  GV +    G++   NP  +
Sbjct: 221 KHGQFSSAIAMLTDITEHKQEPAKPDLERQRLRAILDILPMGVVISDAKGQLLEINPGAK 280

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD- 523
           ++W  +   L   +                   +   A   +  +     +  +E  +  
Sbjct: 281 AIWGEDAPLLDNTSQYHQYKGWWPDTGQPLTAEEWTLARTLATGEAIIGEEIDIETFNGE 340

Query: 524 -SVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              +  S +P+ +A       +   V++T+  R E AL +     +   E   + ++ V
Sbjct: 341 RKTILNSAVPICDATGTIVNAITVNVDITERKRVEAALRQSEALAKARAEELETIMETV 399



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/452 (14%), Positives = 148/452 (32%), Gaps = 51/452 (11%)

Query: 33  MLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET 92
           +L   +   + ++    +L  +     S +     +++ Y  LL   N    ++D + +T
Sbjct: 86  LLNLIVFASVAVLISSLNLQVRTAREASEVQLAKLKVN-YRHLLETANEGIWIFDSEGKT 144

Query: 93  PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL----RKEGQSFDLVAETQ 148
             +  QL Q +          S  N+L+    +++ +  E+     ++  Q FDL  +  
Sbjct: 145 EYVNHQLAQMLGYSVEQISKCSIFNFLEPQARVEIEQWLEQQHKYHQQTKQQFDLRLQRH 204

Query: 149 NDCAIKIEGRVSGSCAFL----RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
           +  ++ +   +    + L    +  S   + +++ E   +  K        + + D L  
Sbjct: 205 DGASLWV---IVSLSSILDKHGQFSSAIAMLTDITEHKQEPAKPDLERQRLRAILDILPM 261

Query: 205 LVWHRDQAGDILWANISYKKNTETEGIVFQKA----------IGESRKLFKEEIKKRMIS 254
            V   D  G +L  N   K     +  +                  + L  EE       
Sbjct: 262 GVVISDAKGQLLEINPGAKAIWGEDAPLLDNTSQYHQYKGWWPDTGQPLTAEEWTLARTL 321

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA------IDVSKEITVNDQLTH- 307
           ++       E      +G  K+     V        I       +D+++   V   L   
Sbjct: 322 ATGEAIIGEEIDIETFNGERKTILNSAVPICDATGTIVNAITVNVDITERKRVEAALRQS 381

Query: 308 ----------TYEILHNLTVAIAI-FDQNRYLQFHNRSFVELWEIDLA--FLATNPSNDE 354
                        I+  +  A+ I  D + +    NR+  E+  +       AT  S   
Sbjct: 382 EALAKARAEELETIMETVPAAVWIAHDPHCHSMSVNRAAYEMMRVPAGSVMTATPASGGY 441

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRG-- 410
              F    N     LN    ++   +  +     +  +   + + ++   T   +P G  
Sbjct: 442 PFPFKIQKNGQDVPLNELAMQQAGLTGQEVEAEVEFVFSSEDVRHIYGKATPLCDPDGNV 501

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
            G I  F ++T +     +  +L++ + E +D
Sbjct: 502 RGVIGAFLDVTER----QQLMSLLQQKQEWLD 529



 Score = 41.1 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 49/145 (33%), Gaps = 12/145 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           +L         L     +F+ L D++  + W     G   + N  +   T T  +   + 
Sbjct: 763 DLTARKQAEAALQQSELMFRTLADTMPQMFWITQPNGYHEYFNQRWYDYTGTT-LEQTQG 821

Query: 237 IGESRKLFKEEIKKRMIS-----SSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGE- 288
            G  + L  +++++ +        +  + +    +     G  + +  +   + +  G+ 
Sbjct: 822 EGWQKILHPDDVQRTIEQWQDSLDTGKDYDIEYRLRRAADGEYRWHLGRAFPLRDENGQM 881

Query: 289 ---AGIAIDVSKEITVNDQLTHTYE 310
               G   D+  +    ++    +E
Sbjct: 882 VKWFGSCTDIHDQKLAIEERAQAWE 906



 Score = 37.6 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T +   E +   L       ++  +EG+ +F  +G+ +  N     +      ++S    
Sbjct: 108 TAREASEVQLAKLKVNYRHLLETANEGIWIFDSEGKTEYVNHQLAQMLGYSVEQISK-CS 166

Query: 480 IRNIAATCSRYYNE---SDGWDLFAAIITSFDDERKSLQG 516
           I N     +R   E                FD   +   G
Sbjct: 167 IFNFLEPQARVEIEQWLEQQHKYHQQTKQQFDLRLQRHDG 206


>gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1238

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 105/512 (20%), Positives = 205/512 (40%), Gaps = 31/512 (6%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D ++      +      +L ++  AI   D+       N++   +     + +    S D
Sbjct: 448 DTTERR--EREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSED 505

Query: 354 ----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               E+   +R+        + +  K+     Y+          L +   L         
Sbjct: 506 LTSPEMGIRIRAE-------DEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGEL 558

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I ++ ++T + +   +     +     +D + +G+  +  D    + NPA+ S+   
Sbjct: 559 QGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGY 618

Query: 470 EENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT----LELLSDS 524
           + N        I  ++    R   E       A  + +++ E + L         L    
Sbjct: 619 KTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWVLSRGR 678

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+E++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+
Sbjct: 679 VVEFTAEGQP-KRMLGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPM 737

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG   L + +   SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L    
Sbjct: 738 NAIIGMLQLAQRT---SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVP 794

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L+ +L+      A K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+ 
Sbjct: 795 FPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQ 854

Query: 704 KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            G  + L               F V++ G  I +D    +F+ F        R   G GL
Sbjct: 855 SGE-IELGCEDVGERDHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGL 913

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI +  +++ GG + + S     +T +  I
Sbjct: 914 GLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 90/297 (30%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKDTTERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 492 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL-----NWKTWKENIFSVYKSSE 386
           N ++  +            S  + L       ++ E       +     E  F +   + 
Sbjct: 609 NPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNG 668

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +   W L  G+ +       P+   +   +++T     E     L   Q   + +L
Sbjct: 669 GYH--WVLSRGRVVEFTAEGQPK-RMLGTHKDITRHKSNEVAL--LEAKQDAELANL 720



 Score = 41.1 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 15/206 (7%)

Query: 360 RSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE     W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 394 QEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 447

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 448 DTTERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 500

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 501 LSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQG 560

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYH 586


>gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1622

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 142/796 (17%), Positives = 286/796 (35%), Gaps = 79/796 (9%)

Query: 44   LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI 103
            ++R R  +A  +       + +    S    ++T+     I W       +        +
Sbjct: 335  MMRHRARMALAMERFRVLGAALQS--SPVAVVITDAEGR-IDWVNS----QYEANTGYSL 387

Query: 104  DIPQTDTDLLSFENWLKFHHYIKL-SKATEKLRKEG----QSFDLVA---ETQNDCAIKI 155
            D  +     L          Y ++ S+    L   G    Q  D      E         
Sbjct: 388  DEVRGRRPSLVASGQTPPETYRQMWSRLIAGLPWRGEFINQRQDGTIYHDEATLSPVFDD 447

Query: 156  EGRVSGSCAFLRILSLDGIY-SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
             GR     A + +        +   E   + ++L+  ++    +FD+    V      G 
Sbjct: 448  HGRRI---AIVGLHENVTERITAHQELQRRERELNEALAQQTAIFDNAP-PVLIV-ADGR 502

Query: 215  ILWANISYKKNTETEGIVFQ----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
            +L  N +  +    +    +    + I    +L +  +++      A E           
Sbjct: 503  LLRFNPACLELLGAQPGQLEGRGVEVIFGGEELHRRFLERVEGRLEAGESVREVARLVRR 562

Query: 271  HGNNKSYKIVRVLNSFGEAGIA-----IDVSKEITVNDQLTHTYE--ILHNLTVAIAIFD 323
             G     ++   L      G+A      DV++       +    E  IL      + +FD
Sbjct: 563  DGTVFEARLSGRLLPLQGYGLACIWVVEDVTEARRSEAAMREMNERLILAQEAGRVGVFD 622

Query: 324  QN--RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
             +  R     +     L+ +        P    L++++ S +    +   +       ++
Sbjct: 623  LDLARDHLVFSEKLASLYGLPH-----QPQGLRLMDWMDSLHL---EDRPRVQARLDAAL 674

Query: 382  YKSSETHKDTWH--LPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTL 432
              ++   +D+W    P+G    ++ ++             I +  ++  Q  LE +    
Sbjct: 675  AGAATGLQDSWRVVRPDGSERWLLCSARIERDAEGRARRLIGVQVDVHEQKQLEARLADQ 734

Query: 433  VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRYY 491
            +  Q   +D +   +     DGR +  N A+   +    E+ L    H  +      R  
Sbjct: 735  LAFQQALVDAIPIPLFHKDGDGRYRGFNRAYEEAFGIRREDFLGKTVHEADFLNQAERAE 794

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQ--------TMLTF 542
             E+D   + A            +   ++L  +D  + +++  +   Q        ++ T 
Sbjct: 795  FEADARTIRAG--------GPPIHKEVDLTYADGEIHHTLFWMHGFQRPDGSPGGSIGTL 846

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            V++TD  RAER L    E   +   +K++F+ ++S+E+R+P+  IIG + L   S    L
Sbjct: 847  VDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKS---GL 903

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              +Q+ YV  I  +   LL ++NDILD + ++AG + +     +L+ +L  +   +  K 
Sbjct: 904  TPRQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGYKA 963

Query: 663  HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-- 718
                + + +  +       V D  RL QI     +NA+ F+ +G   V ++    +G   
Sbjct: 964  GVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVRVVERHGRRV 1023

Query: 719  -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               F V++ G  +  +    +F  F        RR  G GLGL+I ++   L GG V   
Sbjct: 1024 LLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVGAE 1083

Query: 776  SSDEGVTTINCRIPSK 791
            S     +T    +P +
Sbjct: 1084 SVLGEGSTFWVMLPLE 1099


>gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1238

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 105/512 (20%), Positives = 205/512 (40%), Gaps = 31/512 (6%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D ++      +      +L ++  AI   D+       N++   +     + +    S D
Sbjct: 448 DTTERR--EREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSED 505

Query: 354 ----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               E+   +R+        + +  K+     Y+          L +   L         
Sbjct: 506 LTSPEMGIRIRAE-------DEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGEL 558

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I ++ ++T + +   +     +     +D + +G+  +  D    + NPA+ S+   
Sbjct: 559 QGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGY 618

Query: 470 EENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT----LELLSDS 524
           + N        I  ++    R   E       A  + +++ E + L         L    
Sbjct: 619 KTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWVLSRGR 678

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+E++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+
Sbjct: 679 VVEFTAEGQP-KRMLGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPM 737

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG   L + +   SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L    
Sbjct: 738 NAIIGMLQLAQRT---SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVP 794

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L+ +L+      A K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+ 
Sbjct: 795 FPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQ 854

Query: 704 KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            G  + L               F V++ G  I +D    +F+ F        R   G GL
Sbjct: 855 SGE-IELGCEDVGERDHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGL 913

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI +  +++ GG + + S     +T +  I
Sbjct: 914 GLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 90/297 (30%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKDTTERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 492 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL-----NWKTWKENIFSVYKSSE 386
           N ++  +            S  + L       ++ E       +     E  F +   + 
Sbjct: 609 NPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNG 668

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +   W L  G+ +       P+   +   +++T     E     L   Q   + +L
Sbjct: 669 GYH--WVLSRGRVVEFTAEGQPK-RMLGTHKDITRHKSNEVAL--LEAKQDAELANL 720



 Score = 40.7 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 15/206 (7%)

Query: 360 RSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE     W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 394 QEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 447

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 448 DTTERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 500

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 501 LSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQG 560

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYH 586


>gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1238

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 105/512 (20%), Positives = 205/512 (40%), Gaps = 31/512 (6%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D ++      +      +L ++  AI   D+       N++   +     + +    S D
Sbjct: 448 DTTERR--EREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSED 505

Query: 354 ----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               E+   +R+        + +  K+     Y+          L +   L         
Sbjct: 506 LTSPEMGIRIRAE-------DEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGEL 558

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I ++ ++T + +   +     +     +D + +G+  +  D    + NPA+ S+   
Sbjct: 559 QGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGY 618

Query: 470 EENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT----LELLSDS 524
           + N        I  ++    R   E       A  + +++ E + L         L    
Sbjct: 619 KTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWVLSRGR 678

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+E++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+
Sbjct: 679 VVEFTAEGQP-KRMLGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPM 737

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG   L + +   SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L    
Sbjct: 738 NAIIGMLQLAQRT---SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVP 794

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L+ +L+      A K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+ 
Sbjct: 795 FPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQ 854

Query: 704 KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            G  + L               F V++ G  I +D    +F+ F        R   G GL
Sbjct: 855 SGE-IELGCEDVGERDHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGL 913

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI +  +++ GG + + S     +T +  I
Sbjct: 914 GLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 90/297 (30%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKDTTERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 492 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL-----NWKTWKENIFSVYKSSE 386
           N ++  +            S  + L       ++ E       +     E  F +   + 
Sbjct: 609 NPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNG 668

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +   W L  G+ +       P+   +   +++T     E     L   Q   + +L
Sbjct: 669 GYH--WVLSRGRVVEFTAEGQPK-RMLGTHKDITRHKSNEVAL--LEAKQDAELANL 720



 Score = 40.7 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 15/206 (7%)

Query: 360 RSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE     W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 394 QEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 447

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 448 DTTERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 500

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 501 LSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQG 560

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYH 586


>gi|284167215|ref|YP_003405493.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284016870|gb|ADB62820.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 817

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 120/704 (17%), Positives = 262/704 (37%), Gaps = 73/704 (10%)

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAF---LR-----ILSLDGIYSELA 179
            +  +  R++G+             ++ +G    +      +R     +     +  ++ 
Sbjct: 145 ERNLDIAREDGR------VEDEGWRVRADGSRFWANVTITAVRDEDGTLQGFTTVTRDMT 198

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E     ++L       + + +++   +     +GD++ AN         E    + +  +
Sbjct: 199 ERRAYEQQLQRERDFTEQILETVPVGIGLLTPSGDVVRANQRLADQFGIEPAASEPSSID 258

Query: 240 SRKLFK---------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-- 288
           +  L+          E   +R+  +     ++   V   E G  +   I  V     E  
Sbjct: 259 AWDLYDVDGEPIPADERPWRRVFETGHPIDDYQCQVDVPEVG-RRWLSITAVPLEHAEDD 317

Query: 289 ---AGIAIDV-----SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
                +A+D       +E  +  +   T ++L    V IA+ + +R     NR   E + 
Sbjct: 318 ELRIVLAVDDITEQKEQERDLRREYEQTEKLLRTAPVGIAVQNADRETILANRRAQETFG 377

Query: 341 IDLAFLATNPSNDELLEFLRSANKL--PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           +  +    NP +    +   +  +L  PE+    T    +    +     +  +  P+G+
Sbjct: 378 LTESEFTDNPVDTGEWKIYDADGELLGPEE----TTSGRVLQTGEPIFDEELIFEPPDGE 433

Query: 399 TLHVIVTSNPRGGTIWMFE-------NLTV----QVDLETKYNTLVKVQGETIDHLSEGV 447
            LH  V + P  G     E       ++T     +  LE + + L     E +D +S+  
Sbjct: 434 RLHFRVNTAPVFGPDGEIERIITGSKDITELKERERQLEQRKSELETELSEILDRISDAF 493

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                + R    N     L    + ++        +       + E+    L      +F
Sbjct: 494 YALDDEFRFTHLNDHAAELVGRPKAQILDQKVWDVVPDGTEDRHREAFERALETQEPVTF 553

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           +   +          D+  E++  P     ++  F +V++    +R L E NE L     
Sbjct: 554 EIYVED--------DDAWFEFNAYPSETGLSVY-FRDVSERKEYQRKLEESNERL----- 599

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
               F    S++L+ PL  +  +  LL++     L+   ++++E+    +  +  +++ +
Sbjct: 600 --EQFAYAASHDLQEPLRMVTSYLQLLESRYADELDGDAAEFIEFAVDGAERMRKMIDGL 657

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L+ + V+     L    I L +++++   ++  K+ E    I + S   L     D  +L
Sbjct: 658 LEYSRVETQGEPL--EPIDLGEIVDDAIGNLQVKIEETGADITLDS---LPQVRGDESQL 712

Query: 688 LQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+F  +LSNA+++S  +   V + A R    +  SV++ G  I  +    +F  F    
Sbjct: 713 QQVFQNLLSNALEYSGDEPPRVRISADRRGSRWKISVRDEGIGIEPEDQDQIFEVFQRLH 772

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            R +  G G+GLS+ +  +  H G +S+ S     TT +  +P+
Sbjct: 773 GREEHPGTGIGLSLCQRIVERHDGEISVDSEPGEGTTFSFTLPA 816



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 76/282 (26%), Gaps = 33/282 (11%)

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           AI   D +  +   N     +   +   +     +    +   +    PE         N
Sbjct: 97  AIITLDPDGTVASWNEGANRITGYETDEIVGEHVSAFYTDAAIADGA-PE--------RN 147

Query: 378 IFSVYKSSETHKDTWH-LPNGQTLH----VIVTSNPRG---GTIWMFENLTVQVDLETKY 429
           +    +      + W    +G        +    +  G   G   +  ++T +   E + 
Sbjct: 148 LDIAREDGRVEDEGWRVRADGSRFWANVTITAVRDEDGTLQGFTTVTRDMTERRAYEQQL 207

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT------------EENRLSPG 477
                   + ++ +  G+ +  P G +  +N      +               +     G
Sbjct: 208 QRERDFTEQILETVPVGIGLLTPSGDVVRANQRLADQFGIEPAASEPSSIDAWDLYDVDG 267

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSI-IPL 533
             I        R +      D +   +   +  R+ L  T   LE   D  L   + +  
Sbjct: 268 EPIPADERPWRRVFETGHPIDDYQCQVDVPEVGRRWLSITAVPLEHAEDDELRIVLAVDD 327

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
              Q         +  + E+ L      +   +  + + + +
Sbjct: 328 ITEQKEQERDLRREYEQTEKLLRTAPVGIAVQNADRETILAN 369


>gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1238

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 105/512 (20%), Positives = 205/512 (40%), Gaps = 31/512 (6%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D ++      +      +L ++  AI   D+       N++   +     + +    S D
Sbjct: 448 DTTERR--EREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSED 505

Query: 354 ----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               E+   +R+        + +  K+     Y+          L +   L         
Sbjct: 506 LTSPEMGIRIRAE-------DEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGEL 558

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I ++ ++T + +   +     +     +D + +G+  +  D    + NPA+ S+   
Sbjct: 559 QGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGY 618

Query: 470 EENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT----LELLSDS 524
           + N        I  ++    R   E       A  + +++ E + L         L    
Sbjct: 619 KTNEFPALVSTIDELSHPDDRIRVEGYRAQYLADPVGAYEIEFRMLGKNGGYHWVLSRGR 678

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+E++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+
Sbjct: 679 VVEFTAEGQP-KRMLGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPM 737

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG   L + +   SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L    
Sbjct: 738 NAIIGMLQLAQRT---SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVP 794

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L+ +L+      A K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+ 
Sbjct: 795 FPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQ 854

Query: 704 KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            G  + L               F V++ G  I +D    +F+ F        R   G GL
Sbjct: 855 SGE-IELGCEDVGERDHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGL 913

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI +  +++ GG + + S     +T +  I
Sbjct: 914 GLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 93/297 (31%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKDTTERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 492 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIIC 608

Query: 332 NRSFVELWEID----LAFLATNPSNDELLEFLRSANKLPEQL-NWKTWKENIFSVYKSSE 386
           N ++  +         A ++T        + +R      + L +     E  F +   + 
Sbjct: 609 NPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEGYRAQYLADPVGAYEIEFRMLGKNG 668

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +   W L  G+ +       P+   +   +++T     E     L   Q   + +L
Sbjct: 669 GYH--WVLSRGRVVEFTAEGQPK-RMLGTHKDITRHKSNEVAL--LEAKQDAELANL 720



 Score = 41.1 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 15/206 (7%)

Query: 360 RSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE     W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 394 QEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 447

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 448 DTTERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 500

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 501 LSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQG 560

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYH 586


>gi|78776420|ref|YP_392735.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM
            1251]
 gi|78496960|gb|ABB43500.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans
            DSM 1251]
          Length = 1452

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 119/679 (17%), Positives = 243/679 (35%), Gaps = 64/679 (9%)

Query: 162  SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV--WHRDQAGDILWAN 219
              A +    +    ++        ++L         +    +     W+  Q GD ++ N
Sbjct: 432  GGAIVVFRDISNSIAKEQALKRSERELRLEKQRLDAIIQGTNVGTGEWNI-QTGDTIF-N 489

Query: 220  ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE-----KNFCETVSTLEHGNN 274
              + +              ++ + F              E       + E+   ++H N 
Sbjct: 490  ERWAEIIGYTLDEISPTSIDTWEKFSHPDDFIATKKLLEEHLDGKTEYFESEMRMKHKNG 549

Query: 275  KSYKIVRVLN---------SFGEAGIAIDVSKEITVNDQLTHT----YEILHNLTVAIAI 321
                +V                 +G   D+++     +++ H       +L ++   I +
Sbjct: 550  HWVWVVDRAKVFEWDKDGKPVLMSGTHQDITERKLAQEKIEHINNQLESLLESIPDLIWM 609

Query: 322  FDQNRYLQFHNRSFVELWEIDLAFLATNPSND----ELLEFLRSANKLPEQLNWKTWKEN 377
             D N      N+ F + +   L  +      D    EL +F R  +K     N      N
Sbjct: 610  KDVNGVYITCNKRFEDFFGASLDEIKGKTDYDFVSKELADFFREHDKKAMHSNVPL--TN 667

Query: 378  IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
               +  + ++HK+           V   +    G + +  +L+     E K     ++  
Sbjct: 668  FEEITFAVDSHKEFLQT---TKTAVRGRNGEILGILGIGRDLSELKRSEQKLRDSKELLD 724

Query: 438  ETIDHLSEGVAVFGPD---------------------GRIKLSNPAFRSLWKTEENRLSP 476
                    G      D                      R+   N A    +K +E     
Sbjct: 725  LFFKQSMHGFFFMMLDEPIEWNDSIDKEKTLDYVFEHQRVTKINEAMLEQYKAKEEEFLG 784

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             T                   +LF+  I   +   +   GT  ++    +          
Sbjct: 785  FTPTDFFKHNIEE--GRDIWRELFSRGIYHVNTNEQKFDGTPMVIDGDYICLYNSEGKIT 842

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                    +T  +R + AL E  E   +A+  K+ F+ ++S+E+R+P+  IIGF+++L  
Sbjct: 843  GHFGVQREITQDIRDKEALQEAKEEAERANNSKSEFLANMSHEIRTPMNAIIGFSEILLE 902

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            S    L+ KQ   +  I++SS +LL+++NDILD + ++A  +++ +    L  +L+++K 
Sbjct: 903  S---DLDEKQLHQLHKINSSSKMLLSIINDILDFSKIEANRLEIEHREFNLESILSKIKM 959

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
                   +  +      +  +    VAD  R+ Q+   +L NA+ F+ +G+  V LK ++
Sbjct: 960  LFKQTALDKGLEFYCNVEEGVPSMVVADELRITQVLINLLGNAIKFTKEGAVKVDLKISK 1019

Query: 715  DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
             +      +FSV ++G  I ++  + +F  F         +  G GLGLSI    ++  G
Sbjct: 1020 KDEKSATLLFSVIDSGIGISQNQIEKLFKPFSQADDSITRRYGGSGLGLSISSRLVSAMG 1079

Query: 770  GHVSISSSDEGVTTINCRI 788
            G + + S +   +T +  I
Sbjct: 1080 GEIDVKSKEGVGSTFSFEI 1098



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 102/289 (35%), Gaps = 25/289 (8%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             +      +L N+   +   D N    + N+  + +       +     +    +   S
Sbjct: 326 RRRKNFISSLLSNIGEGVYGIDNNGNCTWINKKALNMLGYSEKEILHKNQH----DIFHS 381

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI--VTSNPRGGTIWMFENL 419
                E+ N      N+ S  K + T  + +   +G  L +I  VTS   GG I +F ++
Sbjct: 382 HKPSREKYNADECPINLTSKDKVTRTLNEHFIKKDGSLLPIILTVTSIDEGGAIVVFRDI 441

Query: 420 TVQVDLET---KYNTLVKVQGETIDHLSEGVAVFGPDGRI----KLSNPAFRSLWKTEEN 472
           +  +  E    +    ++++ + +D + +G  V   +  I     + N  +  +     +
Sbjct: 442 SNSIAKEQALKRSERELRLEKQRLDAIIQGTNVGTGEWNIQTGDTIFNERWAEIIGYTLD 501

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-----VLE 527
            +SP +       T  ++ +  D       +    D + +  +  + +   +     V++
Sbjct: 502 EISPTS-----IDTWEKFSHPDDFIATKKLLEEHLDGKTEYFESEMRMKHKNGHWVWVVD 556

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            + +   +       ++ T     ER L +  E +   +    S ++ +
Sbjct: 557 RAKVFEWDKDGKPVLMSGTHQDITERKLAQ--EKIEHINNQLESLLESI 603


>gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1238

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/512 (20%), Positives = 205/512 (40%), Gaps = 31/512 (6%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D ++      +      +L ++  AI   D+       N++   +     + +    S D
Sbjct: 448 DTTERR--EREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSSED 505

Query: 354 ----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               E+   +R+        + +  K+     Y+          L +   L         
Sbjct: 506 LTSPEMGIRIRAE-------DEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGEL 558

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I ++ ++T + +   +     +     +D + +G+  +  D    + NPA+ S+   
Sbjct: 559 QGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGY 618

Query: 470 EENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT----LELLSDS 524
           + N        I  ++    R   E       A  + +++ E + L         L    
Sbjct: 619 KTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWVLSRGR 678

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+E++    P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+
Sbjct: 679 VVEFTAEGQP-KRMLGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPM 737

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG   L + +   SL ++Q  Y+E    S+  LL ++NDILD + ++AG ++L    
Sbjct: 738 NAIIGMLQLAQRT---SLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVP 794

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L+ +L+      + K  E  + + + +    G  +  D  RL Q+   +LSNA+ F+ 
Sbjct: 795 FPLDKVLDHALDLNSLKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQ 854

Query: 704 KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            G  + L               F V++ G  I +D    +F+ F        R   G GL
Sbjct: 855 SGE-IELGCEDVGERDHRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGL 913

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI +  +++ GG + + S     +T +  I
Sbjct: 914 GLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 90/297 (30%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G+ L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKDTTERREREYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG S +          I+                      G       ++
Sbjct: 492 ---GYTESEMIGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL-----NWKTWKENIFSVYKSSE 386
           N ++  +            S  + L       ++ E       +     E  F +   + 
Sbjct: 609 NPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNG 668

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +   W L  G+ +       P+   +   +++T     E     L   Q   + +L
Sbjct: 669 GYH--WVLSRGRVVEFTAEGQPK-RMLGTHKDITRHKSNEVAL--LEAKQDAELANL 720



 Score = 41.1 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 15/206 (7%)

Query: 360 RSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +   K PE     W+ W   +  +++ ++ +       N +   ++     R       +
Sbjct: 394 QEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLVARRTER------LK 447

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + T + + E             +D + E +     +G     N A   +    E+ +  G
Sbjct: 448 DTTERREREYAL------LRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEM-IG 500

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++ +        ++   +          E+  L G   LL    L +         
Sbjct: 501 LSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQG 560

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR 563
            +  + +VT    +   L    E   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYH 586


>gi|323699910|ref|ZP_08111822.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1033

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/640 (19%), Positives = 251/640 (39%), Gaps = 47/640 (7%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G   ++ E     ++L       + L ++    V      G +L  N +  +    +G  
Sbjct: 272 GTTRDITERKRIEERLRTSEHFLQALINATGDSVGLFQVDGTVLAMNRNMARFMGMQGDA 331

Query: 233 FQKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHG---NNKSYKIVRVLNSF 286
              A+G++   F    +  MI      A++ +       +  G   +   Y ++    + 
Sbjct: 332 ---AVGQNVFDFIPRSQHAMIRETFRRAVDTHTPMNRQVVWSGRILDGIIYPVLDGEETT 388

Query: 287 GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
             A    DV++     +    T E    I+      I   D N+ + + N+   + +   
Sbjct: 389 AIAVYGRDVTEARFAEEARKKTQEQYRLIVETANEGILGLDANQVITYANKIVADFFGCR 448

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           +  +        +L+F+  +    E    +  +  +    +    ++  +   +G  +  
Sbjct: 449 VEEVIGR----SILDFMAPSEI--EDNERRMEQRKVGRRER----YERRFVRRDGAEVWG 498

Query: 403 IVTSNP----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIK 457
           +++S P     G  +  F  +    +++  +  L+      +D +S  V V   +   I 
Sbjct: 499 MISSTPLMAEDGRLLGAFAMIADITEVKQAHERLL----NILDGISADVYVSDLETNNIL 554

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N   R  +   E  ++    IR++ + C +        +    + T   +        
Sbjct: 555 FMNANMRDHYGLLEEGMACHKVIRDLDSRCPQCPKPELVDERGRPVGTLVSERYYEKLQR 614

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             L  D  + +    L +   M    ++T+       L +       A   KN F+ ++S
Sbjct: 615 WHLNHDRAIRWLKGRLVH---MHMAADITEIKTMAAELEKAMAKAEAASLAKNEFLANMS 671

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  ++G   L++ S+L  L   Q  Y++    S   LL ++NDILDL+ V++G 
Sbjct: 672 HEIRTPLNGLLGMLQLMQMSELAPL---QRDYLDTALNSGRSLLQVLNDILDLSKVESGK 728

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
           ++L      L ++L++V  +      E  + ++   D  L   FVAD+ RL QI   ++ 
Sbjct: 729 LELEPIPFELGEVLDQVVSTFRHCAEERGVSMRWEIDETLPRHFVADKGRLRQILFNLVG 788

Query: 697 NAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           NA+ F+  GS  +     D+G        +F V + G  IP D   +VF+ F        
Sbjct: 789 NAVKFTESGSIEVRACPLDSGAEDGTIRLLFEVSDTGIGIPRDKVSTVFDPFTQVDGSST 848

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           R+  G GLGL IV   + L GG +++ + +   T++   I
Sbjct: 849 RKYQGTGLGLGIVRRLVALMGGSITVDTEEGKGTSLYFTI 888



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/423 (12%), Positives = 128/423 (30%), Gaps = 51/423 (12%)

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGR--VSGSCAFL------RILSLDGIYSELA 179
            ++   L K GQS    +       +  +GR  +  +  +L      R ++L GI+ ++ 
Sbjct: 88  RESIRLLLKSGQS----SREMEKGLLTADGRDLLVQASCWLQHDESGRAVALWGIFRDIT 143

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS----------------YK 223
           E      +  ++   ++ L ++   ++W  D  G   + + S                 +
Sbjct: 144 ERRSAENRARDNQEKYRFLAENATDVIWTMDDKGRYTYVSPSVERIRGFAPEEMIGMYAQ 203

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL-EKNFCETVSTLEHGNNKSYKIVRV 282
                + +   +   E  +   E    R  S +   E    +   ++  G + + ++   
Sbjct: 204 DAVCPDSMEETRKAWERIEAEAEAASDRSPSPTVRVEVRLRKKDGSMIWGESMARRLRDA 263

Query: 283 -LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQFHNRSFVE 337
             N  G  G   D+++   + ++L  +   L  L  A    + +F  +  +   NR+   
Sbjct: 264 YGNPIGFIGTTRDITERKRIEERLRTSEHFLQALINATGDSVGLFQVDGTVLAMNRNMAR 323

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
              +             + +F+          +        F     + T  +   + +G
Sbjct: 324 FMGMQGDAAVGQ----NVFDFI--------PRSQHAMIRETFRRAVDTHTPMNRQVVWSG 371

Query: 398 QTLHVIVTSNPRGGTIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           + L  I+     G           ++T     E       +     ++  +EG+     +
Sbjct: 372 RILDGIIYPVLDGEETTAIAVYGRDVTEARFAEEARKKTQEQYRLIVETANEGILGLDAN 431

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             I  +N      +      +  G  I +  A      NE             ++     
Sbjct: 432 QVITYANKIVADFFGCRVEEV-IGRSILDFMAPSEIEDNERRMEQRKVGRRERYERRFVR 490

Query: 514 LQG 516
             G
Sbjct: 491 RDG 493



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 80/270 (29%), Gaps = 30/270 (11%)

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             L   +   D    +   N +F  L       +        +L+F   + +  E+ + +
Sbjct: 37  DALGDGVVKTDVKGVILEANAAFCTLIGYAREDVLGK----TVLDFTPRSERARERESIR 92

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---SNPRGGTI----WMFENLTVQVDL 425
                +    +SS   +      +G+ L V  +    +   G       +F ++T +   
Sbjct: 93  L----LLKSGQSSREMEKGLLTADGRDLLVQASCWLQHDESGRAVALWGIFRDITERRSA 148

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-- 483
           E +     +      ++ ++ +      GR    +P+   +       +        +  
Sbjct: 149 ENRARDNQEKYRFLAENATDVIWTMDDKGRYTYVSPSVERIRGFAPEEMIGMYAQDAVCP 208

Query: 484 -------AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL---ELLSDSVLEYSIIPL 533
                   A            D   +     +   +   G++   E ++  + +    P+
Sbjct: 209 DSMEETRKAWERIEAEAEAASDRSPSPTVRVEVRLRKKDGSMIWGESMARRLRDAYGNPI 268

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALR 563
                + T  ++T+  R E  L      L+
Sbjct: 269 ---GFIGTTRDITERKRIEERLRTSEHFLQ 295


>gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 1026

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 105/524 (20%), Positives = 197/524 (37%), Gaps = 44/524 (8%)

Query: 298 EITVNDQLTHTYEILHNL-TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           E ++ +       IL  L  VA+   D    L + N +  E   +    +      + + 
Sbjct: 359 EKSLRESEQEKAAILGGLKNVAVEYLDPFMRLIWINDNLQESIGLSADEMLGARCYEAVF 418

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----G 411
                 +              +        + +     P+G+T     +          G
Sbjct: 419 GRSEPCSG-----------CTVARAINMGASQEGDLITPDGRTWISRSSPLKDADGKIIG 467

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE- 470
            + +  +++ +   E       +   + I+ L +   V   +G++   N A   +   + 
Sbjct: 468 VVHVLIDISARKSAERALKESERRLADIIEFLPDATFVVDKNGKVISWNRAIEKITGVKA 527

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS----------FDDERKSLQGT--- 517
           E  L  G +  ++     R     D        I             D+E   L G    
Sbjct: 528 ELILGKGDYEYSLPFYGERRPTLIDMAKGIDPKIDPEFEKKYENLKRDEENNLLVGEAYM 587

Query: 518 -LELLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNS 571
            L+   D+ L  S   L ++            ++TD  R E  L    E    A   K+ 
Sbjct: 588 PLQGKGDAYLLGSASALYDSNGDYWGAIESIRDITDRKRVEEELQRSKEMAESATRAKSE 647

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  +IG T+LL   K   L S Q + VE I  S   LL+++N+ILDL 
Sbjct: 648 FLANMSHEIRTPMNAVIGLTELLMDEKDEKLTSAQRECVEMIRISGDTLLSIINNILDLT 707

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQI 690
            ++A + +L +  I +   +      ++  + +  I+     +  +    + D  RL QI
Sbjct: 708 KIEANMTELEHRPIDVKGCIESSMDLVSGSVGDKRIKFSYKIEENVPQFIMGDPTRLCQI 767

Query: 691 FSKILSNAMDFSSKGST-VILK-AARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              +L+NA+ F+ +G   V +     D+G  +  F+VK+ G  IPED    +F  F    
Sbjct: 768 LINLLNNAVKFTEQGEIAVSVSNTNLDDGGYEIHFAVKDTGIGIPEDKMSRLFRSFSQVD 827

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                +  G GLGL+I +    +  G + + S+    +  +  I
Sbjct: 828 ASTARKYGGTGLGLAISKKLTEMMNGRMWVESAVGVGSVFHFTI 871



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/449 (14%), Positives = 140/449 (31%), Gaps = 55/449 (12%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANISYKK- 224
           R   L    +E+ E     K L         +   L +  V + D    ++W N + ++ 
Sbjct: 341 RNQLLTTTLTEIEERKRVEKSLRESEQEKAAILGGLKNVAVEYLDPFMRLIWINDNLQES 400

Query: 225 ----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE---------KNFCETVSTLEH 271
                 E  G    +A+    +        R I+  A +         + +    S L+ 
Sbjct: 401 IGLSADEMLGARCYEAVFGRSEPCSGCTVARAINMGASQEGDLITPDGRTWISRSSPLKD 460

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
            + K   +V VL       I+   S E  + +      +I+  L  A  + D+N  +   
Sbjct: 461 ADGKIIGVVHVLID-----ISARKSAERALKESERRLADIIEFLPDATFVVDKNGKVISW 515

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSAN-------------KLPE-QLNWKTWKEN 377
           NR+  ++  +    +      +  L F                    PE +  ++  K +
Sbjct: 516 NRAIEKITGVKAELILGKGDYEYSLPFYGERRPTLIDMAKGIDPKIDPEFEKKYENLKRD 575

Query: 378 IFSVYKSSETH------KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
             +     E +       D + L  G    +  ++    G I    ++T +  +E +   
Sbjct: 576 EENNLLVGEAYMPLQGKGDAYLL--GSASALYDSNGDYWGAIESIRDITDRKRVEEELQR 633

Query: 432 LVKV-------QGETIDHLSEGV-----AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             ++       + E + ++S  +     AV G    + +     +      E        
Sbjct: 634 SKEMAESATRAKSEFLANMSHEIRTPMNAVIGLT-ELLMDEKDEKLTSAQRECVEMIRIS 692

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              + +  +   + +        +     D +  ++ +++L+S SV +  I      +  
Sbjct: 693 GDTLLSIINNILDLTKIEANMTELEHRPIDVKGCIESSMDLVSGSVGDKRIKFSYKIEEN 752

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEI 568
           +    + D  R  + L        K  E 
Sbjct: 753 VPQFIMGDPTRLCQILINLLNNAVKFTEQ 781


>gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 885

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 132/649 (20%), Positives = 247/649 (38%), Gaps = 64/649 (9%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF-QKAIGE 239
                  L    + F+ LF      +      G  L  N S+ +          Q+   +
Sbjct: 15  LKQTETALLESENRFRDLFHLAPIGMAEVSLGGQFLEVNSSFCEFIGYSRKELMQRGFNQ 74

Query: 240 SRKLFKEEI----KKRMISSSALEKNFCETVSTLEHGNNKS--------YKIVRVLNSFG 287
                  ++      R+I     + N  +      H              ++  V N F 
Sbjct: 75  ITHPHDRDMSMNYFSRLIQGEFKQYNLEKR---YRHKEGHWVYGILHCYLRLDTVGNPFS 131

Query: 288 EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQF--HNRSFVELWEI 341
                 D+S+   + + L    E    +L N+   +  F ++  L F   N+ + E  ++
Sbjct: 132 VITQIQDISEYKKIEEDLKQQKEYLRLVLDNIPQQV--FWKDTNLVFKGCNKKWAEYAQL 189

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-----N 396
           + A      ++ +L        K  E   +  ++     V  S E   +          +
Sbjct: 190 ESAESVIGKTDYDLF-------KNWEVAEF--YRRQDRRVMTSKEPELNVIAPKQKPTTD 240

Query: 397 GQTLHVIVTSNP----RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           G+ + + ++  P     G   G I + E++T Q +++ K      +   +ID   + V  
Sbjct: 241 GRQIWLDISRVPMLDTDGYVIGIIGVLEDITEQKEIDEKLR----LTQFSIDKSRDYVLF 296

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              + R   +N A         +       +++I    S         +L      +F+ 
Sbjct: 297 TDINARFFYTNEAATKTLGYSRDEFLQMQ-VKDIDPNASENQWSISWENLRQQGSFTFES 355

Query: 510 ERKSLQGTL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             K   G      ++ S LEY+              ++++    E  L +  EA   A+ 
Sbjct: 356 IHKMKTGEHISVEITLSYLEYN----NKEYGCAVVRDISERKHTEIVLQQAKEAAEAANR 411

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTS---KLGSLNSKQSQYVEYISASSTILLNLV 624
            K+ F+  +S+ELR+PL  I+GFT L+      K   L     +++E I  S   LLNL+
Sbjct: 412 SKSEFLARMSHELRTPLNAILGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLNLI 471

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           ND+L+++ ++AG + LN +   L  LL+ ++  +  K     +++    D  +  ++  D
Sbjct: 472 NDVLEMSKIEAGQISLNSAHFDLLKLLHCLRDMLELKAQSKGLKLLFEIDSDVPQYIQTD 531

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFN 740
             +L Q+   +L NA+ F+  G  ++      N      IF V++ G  I  +  + VF 
Sbjct: 532 ESKLRQVLINLLGNAIKFTDAGCIILRTKTVKNSKANRLIFEVEDTGYGISPEELQYVFK 591

Query: 741 RFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F+     R  ++G GLGLSI + FI L GG +++SS     T     I
Sbjct: 592 PFIQTETGRKSQQGTGLGLSISQKFIKLMGGKITVSSQLGQGTCFRFNI 640



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 87/265 (32%), Gaps = 19/265 (7%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            +++E     + L       +++ D++   V+ +D        N  + +  + E      
Sbjct: 137 QDISEYKKIEEDLKQQKEYLRLVLDNIPQQVFWKDTNLVFKGCNKKWAEYAQLESAESVI 196

Query: 236 AI--------GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--- 284
                      E  + ++ + ++ M S                 G      I RV     
Sbjct: 197 GKTDYDLFKNWEVAEFYRRQDRRVMTSKEPELNVIAPKQKPTTDGRQIWLDISRVPMLDT 256

Query: 285 ---SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                G  G+  D++++  ++++L  T   +      +   D N    + N +  +    
Sbjct: 257 DGYVIGIIGVLEDITEQKEIDEKLRLTQFSIDKSRDYVLFTDINARFFYTNEAATKTLGY 316

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                       ++ +   +A++    ++W+  ++     ++S    K   H+    TL 
Sbjct: 317 SRDEFLQ----MQVKDIDPNASENQWSISWENLRQQGSFTFESIHKMKTGEHISVEITLS 372

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLE 426
            +  +N   G   +  +++ +   E
Sbjct: 373 YLEYNNKEYGCA-VVRDISERKHTE 396


>gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 851

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 179/384 (46%), Gaps = 12/384 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR--IKLSNPAFRSLWKTEENRL 474
           E+L        K N L     + I+       ++  D    +   +          ++ L
Sbjct: 471 EDLREYTKELKKSNQLRNELAKIIESSPVIAFLWNKDDSCSVNYVSNNVDQFGYDPDDFL 530

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           S   +  +I         +    +     +  F+ E + L    E+     ++       
Sbjct: 531 SGSLNYADIIHPDDLENVKEKTVETITNCLEEFNHEYRILTKNGEV---RWVDERTSSDF 587

Query: 535 NAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +    +T+     ++VTD  +AE AL E       A+  KN F+ +VS+ELR+PL +IIG
Sbjct: 588 DENGNVTYLRGIVIDVTDKKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNSIIG 647

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++L+ T + G LN  Q  Y+  +  S   LL+L+N ILD++ ++AG M  N   + + D
Sbjct: 648 FSELMLTERRGELNEYQKHYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNLPIID 707

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+N+V  ++  +    NI ++ I+D  LG+  AD  +L +    +++NA+ F+ +   V 
Sbjct: 708 LVNDVSNTMHPQALNKNIELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPERGKVT 767

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINL 767
           L+  + +G+  F+VK+ G  IPED    +F  F     +   +  G GLGL++V+ F+ +
Sbjct: 768 LQVNKLDGNIRFAVKDTGIGIPEDKQSDLFKPFTQIDTSASREYGGAGLGLALVKKFVEM 827

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           H G + I S     T I   IP K
Sbjct: 828 HNGRIWIESEVNKGTAIYFTIPVK 851


>gi|239907500|ref|YP_002954241.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797366|dbj|BAH76355.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1133

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 101/529 (19%), Positives = 202/529 (38%), Gaps = 28/529 (5%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           + +S  +       GE G A+D   +  + +++  T E++  + V +   D        N
Sbjct: 330 DRRS-GLAESKGEMGELGRALDAMADK-LKERIRFTQELIDAIPVPVFYKDLESRYLGCN 387

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            ++                   +        +LP Q       +      ++     +T 
Sbjct: 388 AAYER----------AIRPLARIRRRTVHDLELPAQAALCAKTDRAVLSGEAETVEYETS 437

Query: 393 HLPNGQTLHVIVTSNPR--------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            L   QT+H +V    R         G I +  ++T +   E +           +D + 
Sbjct: 438 LLFRDQTVHDVVVFKSRFHDVAGRTAGVIGVLLDITGRKCSEAELLASRTRYKLLLDSMG 497

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +G  V   D R+  SNPAF+ +     + L   T+         +               
Sbjct: 498 DGFVVLSSDYRLVESNPAFQEMTGYGPDELEKMTYRDITPEAWHKPEERLLAEVDAKGSA 557

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             F+ E +   G++  ++     +   P  + +      ++ D    E  L +  EA   
Sbjct: 558 EVFEKEYRRKDGSILPVAVRPHRHPESPGEDRRYFAVVRDIADVKAIEADLRQAKEAAET 617

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+PL  +IG T+L   +    L+ +Q   +E    ++  LL ++
Sbjct: 618 ANRAKSDFLAKMSHEIRTPLHAVIGMTEL---TLGTELSPQQRDALETAREAAGNLLGII 674

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LDL+ ++A  ++L      L   L  V +++  +     + + + ++         D
Sbjct: 675 NDVLDLSRIEAKGLELVIQDFDLRRTLAGVARTLRPQAARKGLFLTLAVAPNTPRHVRGD 734

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNR 741
           + R+ QI   ++ NA+ F+ +G   +  AA D   G    +V + G  I  D  + +F+ 
Sbjct: 735 QGRVRQILLNLVGNAVKFTREGGVTVTVAAPDGDPGQLELAVADTGIGIAPDRLERIFDM 794

Query: 742 FVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F            G GLGL+I    +   GG +++ S     T    ++
Sbjct: 795 FTQADRTVALNFGGTGLGLAICRELVRSMGGEIAVDSVPGQGTVFRVKL 843



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 94/296 (31%), Gaps = 36/296 (12%)

Query: 168 ILSLDGIYSELAE-TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           +    G   EL         KL   I   + L D++   V+++D     L  N +Y++  
Sbjct: 335 LAESKGEMGELGRALDAMADKLKERIRFTQELIDAIPVPVFYKDLESRYLGCNAAYERAI 394

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISS-SALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                + ++ + +     +  +  +   +  + E    E  ++L   +   + +V   + 
Sbjct: 395 RPLARIRRRTVHDLELPAQAALCAKTDRAVLSGEAETVEYETSLLFRDQTVHDVVVFKSR 454

Query: 286 F--------GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNR 333
           F        G  G+ +D++       +L  +      +L ++     +   +  L   N 
Sbjct: 455 FHDVAGRTAGVIGVLLDITGRKCSEAELLASRTRYKLLLDSMGDGFVVLSSDYRLVESNP 514

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK---SSETHKD 390
           +F E+       L          E +   +  PE   W   +E + +      S+E  + 
Sbjct: 515 AFQEMTGYGPDEL----------EKMTYRDITPEA--WHKPEERLLAEVDAKGSAEVFEK 562

Query: 391 TWHLPNGQTLHVIVTSN-------PRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            +   +G  L V V  +              +  ++     +E       +     
Sbjct: 563 EYRRKDGSILPVAVRPHRHPESPGEDRRYFAVVRDIADVKAIEADLRQAKEAAETA 618


>gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51]
 gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 896

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 116/638 (18%), Positives = 235/638 (36%), Gaps = 68/638 (10%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRMISSS 256
           L D+L  L+W  D+AG+  + N ++ + T   G+ F +  GE        E    +++  
Sbjct: 7   LVDNLPALLWSSDRAGNYDYVNQAWLQFT---GLTFAEVRGEGWLSCVHPEDSPGVMNVL 63

Query: 257 ALEKNFCET-----VSTLEHGNNKS-------YKIVRVLNSFGEAGIAIDVSKEITV--- 301
              +                G  +        Y   +   + G  G+ ID+++       
Sbjct: 64  EHSRRHKAPFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELA-GYTGVIIDITERKAAEIM 122

Query: 302 -NDQLTHTYEILHNLTVAIAIF-----DQNRYLQFHNRSFVELWEIDLAFL----ATNPS 351
             +      EI + +T  + I       Q   +Q  N    EL  +  A +         
Sbjct: 123 TRENAEKFREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIK 182

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNP 408
               L       +     N+  + E +   ++  E   +    +H+ NG+ +        
Sbjct: 183 VKSPLTLANEFTQKLLSKNYLVF-EGMLLTHQGKEIPVEVKAHYHVLNGRRM-------- 233

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-----GRIKLSNPAF 463
               + +  +++ Q  +            +  D++++ V V+        G +   N   
Sbjct: 234 ---LLSIARDISNQKRIHKILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEINEKA 290

Query: 464 RSLWKTEE--NRLSPGTHIR----NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           R L    E     S G  IR     +         E      F  I T+ + E   ++  
Sbjct: 291 RRLMGYHEETFMFSAGPCIRPSSPQLTLDDVWQMLEETHSASFEGICTNLEGEDIPVEVN 350

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                 +  +  +  L +           +  RAE    +  E    A+  K+ F+ ++S
Sbjct: 351 CHTFPLNGSKVMLTLLRD--ITERKQIEQERKRAEAEFQQAKEKAEAANRAKSEFLANMS 408

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+P+  IIG  DL   + L SL   Q + ++     +  L  ++NDILD + ++AG 
Sbjct: 409 HEIRTPINGIIGMIDL---TLLTSLEKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGK 465

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILS 696
           + +      L +++ ++ ++ + +     + +       L  +   D +R+ Q+ + +LS
Sbjct: 466 LTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLS 525

Query: 697 NAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQ 750
           NA+ F+ +G        L+   D  D  F+V + G  I E+    +F  F  V  +   +
Sbjct: 526 NALKFTERGEVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRK 585

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I    + + GG + + S     ++    +
Sbjct: 586 YGGTGLGLAISRKLVEMMGGRIWVESEKGKGSSFGVVL 623


>gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 765

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 129/643 (20%), Positives = 243/643 (37%), Gaps = 45/643 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE------ 227
            +  + +      KL N    F+ + +++  +    D  G++++ N  +   T       
Sbjct: 127 QHINITDRKEVQIKLKNSEQQFRNVLENIRLISITLDTIGNLIFCNEYFLNITGWKKEEI 186

Query: 228 -----TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                 E  V      E   +F+  IK     +    +   +         N      + 
Sbjct: 187 IHKNWFELFVSHDIKSEINDMFRTTIKNNSYPTYYENEILTKNCEKKIIAWNNVVNKDQN 246

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
                 + I  DV+++      L     I        A  D +  + + N  F  L    
Sbjct: 247 DKILSISCIGEDVTEKRQYEINLRKFKSISDRANYGSATTDLHGNVTYINDYFAYLHGYS 306

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLH 401
              L         L    S  +L E        E +      S T+ + WH   NG T  
Sbjct: 307 PDELIGKN-----LSIFHSDGQLEEV---HRVNEELMEN--GSYTNIEIWHTHKNGTTFP 356

Query: 402 VIVT--------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           ++++         NP+        ++T   ++E +     K     +++ ++G+ +   D
Sbjct: 357 MLMSAVVMKDEGRNPQ-YLSASAVDITHLKNIEDRIYESEKKYSSLVENGNDGIIII-QD 414

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G IK +N     + +     L     I  ++        +     L    I S       
Sbjct: 415 GLIKYANRKMIEMSEYSHEELIENPFIDFVSPKYIEIVKDRYQKRLNGEDIPSH------ 468

Query: 514 LQGTLELLSDSVLEYSI-IPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +  +E   D  +   + + + N Q    TM    +++D  +A+ AL        +A+  
Sbjct: 469 YEIEIEANDDRTIPVDLSVSIINYQGLLATMAILRDISDWKQAKAALIYARLTAEEANRT 528

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+ +VS+ELR+PL  IIGF+D+L +   G LN KQ +Y   I  + + LL +VN I+
Sbjct: 529 KTEFLANVSHELRTPLNPIIGFSDILVSGVAGELNEKQKKYALNIKQNGSKLLTIVNRII 588

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+  +    + L      + +++ E K  + +   +  I + +  D +L   VAD+ +  
Sbjct: 589 DMCNIRISKLDLKCDCFKVIEMIIETKDLLNSIALKKKILLDLHIDPELNEIVADKTKTR 648

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           +I   ++ NA+ F+  G  V + A + +     SV + G  I       +F  F+     
Sbjct: 649 EILYNLIENAIKFTPSGGHVSIHAIQKDDYVQISVTDTGIGIAHSDIGIIFRPFLQVDSS 708

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             R+  GVGLGL +V+ ++ L GG + + S     +T    +P
Sbjct: 709 TTRQYDGVGLGLMLVKEYVKLQGGDIWVDSELGKGSTFTFTLP 751



 Score = 44.2 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 87/292 (29%), Gaps = 37/292 (12%)

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGES--RKLFKEEIKKRMISSSALEKNFCETVS 267
           +  G I + N +++   +  G+   K    +   K+  E   +    +S   K   + ++
Sbjct: 29  NPDGFITYTNKNWESFAKDNGLDPSKCSEGTNYLKICDEANGEHATGASIEAKGIIDVIN 88

Query: 268 TLEH-----------GNNKSYKIVRVL------NSFGEAGIAIDVSKEIT--VNDQLTHT 308
             +               + + +                 I I   KE+   + +     
Sbjct: 89  GNKDIYKIEYPCHSPDEKRWFLLKATPLSKVYPTDVLLQHINITDRKEVQIKLKNSEQQF 148

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSNDELLEFLRSA 362
             +L N+ +     D    L F N  F+ +        I   +     S+D   E     
Sbjct: 149 RNVLENIRLISITLDTIGNLIFCNEYFLNITGWKKEEIIHKNWFELFVSHDIKSEINDMF 208

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
               +  ++ T+ EN   + K+ E     W+    +  +  + S    G     E++T +
Sbjct: 209 RTTIKNNSYPTYYENEI-LTKNCEKKIIAWNNVVNKDQNDKILSISCIG-----EDVTEK 262

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              E              D  + G A     G +   N  F  L     + L
Sbjct: 263 RQYEINLR----KFKSISDRANYGSATTDLHGNVTYINDYFAYLHGYSPDEL 310



 Score = 41.5 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/170 (10%), Positives = 57/170 (33%), Gaps = 8/170 (4%)

Query: 319 IAIFDQNRYLQFHNR---SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           I I + + ++ + N+   SF +   +D +  +   +  ++ +     +     +  K   
Sbjct: 25  IVIINPDGFITYTNKNWESFAKDNGLDPSKCSEGTNYLKICDEANGEHATGASIEAKGII 84

Query: 376 ENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNPRGG---TIWMFENLTVQVDLETKYNT 431
           + I    K     +   H P+  +   +  T   +      +    N+T + +++ K   
Sbjct: 85  DVINGN-KDIYKIEYPCHSPDEKRWFLLKATPLSKVYPTDVLLQHINITDRKEVQIKLKN 143

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
             +     ++++          G +   N  F ++   ++  +       
Sbjct: 144 SEQQFRNVLENIRLISITLDTIGNLIFCNEYFLNITGWKKEEIIHKNWFE 193


>gi|253699608|ref|YP_003020797.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774458|gb|ACT17039.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 916

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 111/550 (20%), Positives = 218/550 (39%), Gaps = 41/550 (7%)

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIAI-----DVSKEITVNDQL---THTYEILHNLT 316
           +V       +  +++  V      A + +     DVS++    + L        ++ NL 
Sbjct: 132 SVERPGGKESFLFEVGEVFRDDSGAALRVVSVVQDVSEQKEAENALFFEQRYRGLIENLP 191

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             I + D N      N SF     ++   +      D     L    +  +        E
Sbjct: 192 QRIFLKDCNSVYLSCNSSFARDLGVEPTDVFGKTDYDLFAPELARKRQDDD--------E 243

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNT 431
            + +   + E  +D     +G  +   +           G + +  ++T +   E +   
Sbjct: 244 KVMAAGAAVE--RDEQRQRDGAWISKALIPLKDDNGRVYGLLGVLTDITFRKRAEEQLKE 301

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +      +  + G+      G +   N  F  +   E+  L   + ++ I     R  
Sbjct: 302 SEERFRNIFEQAALGICHLALSGALIRINRRFCDILGFEQEELLGWSLVQTI-HPDDRAA 360

Query: 492 NESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD-- 547
            +     L +  I S+  E + +   GT   ++   L  S++  P  +       + D  
Sbjct: 361 EQRQAARLLSREIDSYSIEIRQMRHDGTPVWVN---LTKSLVCGPKGEPKYLTGVIEDVT 417

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + R    L  + + ++ A   K+ F+ ++ +E+R+PL  ++G + L   ++   L+SKQ 
Sbjct: 418 ANREAEELRRERDLVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTE---LDSKQR 474

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+E I +SS  LLN++NDILD + ++AG ++L  + + L ++L  +     +K  E  I
Sbjct: 475 GYLEKIGSSSRTLLNIINDILDFSKMEAGKLELEQTELNLYEVLGNISDMHHSKAQEKGI 534

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
             +V     L    V D  RL Q+ + +++NA+ F+ KG  V+    L+      +  F 
Sbjct: 535 EFRVRLAPDLPKKLVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRRGEGEVEVHFC 594

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  +    +F  F        RR  G GLGLSI    + L  G + + S    
Sbjct: 595 VQDTGIGIAPEQMGKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMRGELQVESVPGS 654

Query: 781 VTTINCRIPS 790
            ++ +  +P 
Sbjct: 655 GSSFSFTVPL 664



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 92/278 (33%), Gaps = 35/278 (12%)

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
           A LR++S   +  +++E       L      ++ L ++L   ++ +D     L  N S+ 
Sbjct: 156 AALRVVS---VVQDVSEQKEAENALFFE-QRYRGLIENLPQRIFLKDCNSVYLSCNSSFA 211

Query: 224 KNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           +     G+      G++   LF  E+ ++              V   E        I + 
Sbjct: 212 R---DLGVEPTDVFGKTDYDLFAPELARKRQDDDEKVMAAGAAVERDEQRQRDGAWISKA 268

Query: 283 LNS--------FGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
           L          +G  G+  D++     E  + +       I     + I     +  L  
Sbjct: 269 LIPLKDDNGRVYGLLGVLTDITFRKRAEEQLKESEERFRNIFEQAALGICHLALSGALIR 328

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            NR F ++   +   L        L++ +   ++  EQ             Y  S   + 
Sbjct: 329 INRRFCDILGFEQEELLG----WSLVQTIHPDDRAAEQRQAARLLSREIDSY--SIEIRQ 382

Query: 391 TWHLPNGQTLHVIVTSN----PRG---GTIWMFENLTV 421
             H  +G  + V +T +    P+G       + E++T 
Sbjct: 383 MRH--DGTPVWVNLTKSLVCGPKGEPKYLTGVIEDVTA 418


>gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1237

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 115/511 (22%), Positives = 216/511 (42%), Gaps = 40/511 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                + ++      ++  L VA  + D    ++  NRS  EL++  L  L    +   +
Sbjct: 346 QAARDLQEREERFRLLVERLPVATVLCDAKGRIEMANRSAAELFDCPLNGLLGE-TVLRV 404

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIW 414
           L  + S   L EQL                E+ +       G+++ V ++ NP   G+ +
Sbjct: 405 LPNIESPQDLQEQL---------------GESDERMVRTLRGESIPVSISLNPLHEGSSY 449

Query: 415 MFE--NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    +L  +   E ++          ++     + +    GRI + N     ++   E 
Sbjct: 450 LINLVDLRARKVAEERFRL-------VVEASPNAIVLVDGLGRIAMVNRQTEQMFG-YER 501

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           ++  G  I  +     R  + +      A          + L G         LE  + P
Sbjct: 502 QMLLGEPIEMLLPAALRGGHVALRRGYQAMPEQRRMGGNRELFGQHREGRLIPLEVGLSP 561

Query: 533 LPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + +          +++++   AE+ L E+ E L  A+  K+ F+ ++S+ELR+PL +I+ 
Sbjct: 562 IRSGNESLVQAVIIDISERRAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILI 621

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +D L+ +  G+L  KQ+++ + +  + + LL L+ND+LDLA V++G M+L    I + D
Sbjct: 622 LSDQLRQNLAGNLTEKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQD 681

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +L E+  S+        + +    D  +   + +DR RL QI   +LSNA+ F+ +G  V
Sbjct: 682 VLVELDASLRPMAELKGLSLHTQIDAGVPRVIHSDRVRLHQILRNLLSNALKFTDQGE-V 740

Query: 709 ILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
            L  + +           FSV++ G  I     + VF  F        RR  G GLGL+I
Sbjct: 741 TLTVSSEGRQEDERELLCFSVRDTGIGIDPAQHEQVFQAFQQIDGSTSRRFGGTGLGLAI 800

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +    G + + S+    +T   R+P +
Sbjct: 801 TRQLVLALDGDIGLQSTPGQGSTFTVRLPVQ 831



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 74/270 (27%), Gaps = 23/270 (8%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQ 234
            +L  +    + L      F++L + L       D  G I  AN S  +  +     +  
Sbjct: 339 RKLHMSEQAARDLQEREERFRLLVERLPVATVLCDAKGRIEMANRSAAELFDCPLNGLLG 398

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + +       +                  E +     G +    I       G     I+
Sbjct: 399 ETVLRVLPNIESP-----QDLQEQLGESDERMVRTLRGESIPVSISLNPLHEGS-SYLIN 452

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +               ++     AI + D    +   NR   +++  +   L   P    
Sbjct: 453 LVDLRARKVAEERFRLVVEASPNAIVLVDGLGRIAMVNRQTEQMFGYERQMLLGEPIEML 512

Query: 355 LLEFLRSANK--------LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
           L   LR  +         +PEQ         +    +    H++   +P    L  I + 
Sbjct: 513 LPAALRGGHVALRRGYQAMPEQR-------RMGGNRELFGQHREGRLIPLEVGLSPIRSG 565

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           N       +  +++ +   E K     +  
Sbjct: 566 N-ESLVQAVIIDISERRAAEQKLREQAEQL 594


>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus]
          Length = 1177

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 121/706 (17%), Positives = 258/706 (36%), Gaps = 98/706 (13%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           S   L I++L  +  ++A  + + K+L + +    ++           D  G IL+AN +
Sbjct: 64  SAPLLWIMALRPLAQQIARESQRNKELLDALDAHALVS--------ITDLQGRILYANDN 115

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV------STLEHGNNK 275
           +           ++ +G+  ++       +              +      +  + G   
Sbjct: 116 F---CAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRY 172

Query: 276 SYKIVRVLN------SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
                 V              I  D++ +     QL    + +   +  I + D+   + 
Sbjct: 173 WVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQAMDANSEMILLTDRAGRII 232

Query: 330 FHNRSFV--------ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           + N +          EL     + L +  ++ E L  ++ A +  +      W   + + 
Sbjct: 233 YANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQP-----WSGRLLNR 287

Query: 382 YKSSE-THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            ++    H    +     T  +    N   G + +  +++ +V+ E       +     +
Sbjct: 288 RRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHDVSARVERERALAMEQEDTAARL 347

Query: 441 ---DHLSE---------------------------GVAVFGPDG---RIKLSNPAFRSLW 467
              + L +                           G+ +    G   ++ +    F   +
Sbjct: 348 RITETLQQSAPLDERCRQVLRILFELGTFGLQRKGGIFLKAEHGNCLKLFVLEGKFCDEF 407

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL- 526
              E  +  G  +   +A        SD           F+D        + + S   L 
Sbjct: 408 VRREQTIPMGACLCGRSAVSGEILV-SDDCFQDHRHEHRFEDMESHGHYIVPIASGGDLL 466

Query: 527 --------------EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                         E  ++ L     ML    + D  RA+ +L   ++A   A + K++F
Sbjct: 467 GVLFLYTDPNPTRSEARMVMLRQVGEMLALAILED--RAKASLKAAHDAAVDAAQAKSAF 524

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  ++G  +LLK +    ++ +Q   VE  S S+  LL ++N ILD + 
Sbjct: 525 LANMSHEIRTPMNGVLGMLELLKDT---DMSREQWDLVETASNSAESLLEIINSILDFSK 581

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
           ++AG +++  +   L DL+ EV   +A + H+  + +       L   ++ D  R+ QI 
Sbjct: 582 LEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQIL 641

Query: 692 SKILSNAMDFSSKGST-VIL---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           + +L N++ F+ +G   V +   +A     D  F +++ G  I  D+   +F  F     
Sbjct: 642 TNLLGNSVKFTERGEVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADG 701

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              RR  G GLGLSI  + + L GG + + S+    +     +P +
Sbjct: 702 STSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLPLE 747


>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
 gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
          Length = 1177

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 121/706 (17%), Positives = 258/706 (36%), Gaps = 98/706 (13%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           S   L I++L  +  ++A  + + K+L + +    ++           D  G IL+AN +
Sbjct: 64  SAPLLWIMALRPLAQQIARESQRNKELLDALDAHALVS--------ITDLQGRILYANDN 115

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV------STLEHGNNK 275
           +           ++ +G+  ++       +              +      +  + G   
Sbjct: 116 F---CAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRY 172

Query: 276 SYKIVRVLN------SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
                 V              I  D++ +     QL    + +   +  I + D+   + 
Sbjct: 173 WVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQAMDANSEMILLTDRAGRII 232

Query: 330 FHNRSFV--------ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           + N +          EL     + L +  ++ E L  ++ A +  +      W   + + 
Sbjct: 233 YANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQP-----WSGRLLNR 287

Query: 382 YKSSE-THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            ++    H    +     T  +    N   G + +  +++ +V+ E       +     +
Sbjct: 288 RRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHDVSARVERERALAMEQEDTAARL 347

Query: 441 ---DHLSE---------------------------GVAVFGPDG---RIKLSNPAFRSLW 467
              + L +                           G+ +    G   ++ +    F   +
Sbjct: 348 RITETLQQSAPLDERCRQVLRILFELGTFGLQRKGGIFLKAEHGNCLKLFVLEGKFCDEF 407

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL- 526
              E  +  G  +   +A        SD           F+D        + + S   L 
Sbjct: 408 VRREQTIPMGACLCGRSAVSGEILV-SDDCFQDHRHEHRFEDMESHGHYIVPIASGGDLL 466

Query: 527 --------------EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                         E  ++ L     ML    + D  RA+ +L   ++A   A + K++F
Sbjct: 467 GVLFLYTDPNPTRSEARMVMLRQVGEMLALAILED--RAKASLKAAHDAAVDAAQAKSAF 524

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  ++G  +LLK +    ++ +Q   VE  S S+  LL ++N ILD + 
Sbjct: 525 LANMSHEIRTPMNGVLGMLELLKDT---DMSREQWDLVETASNSAESLLEIINSILDFSK 581

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
           ++AG +++  +   L DL+ EV   +A + H+  + +       L   ++ D  R+ QI 
Sbjct: 582 LEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQIL 641

Query: 692 SKILSNAMDFSSKGST-VIL---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           + +L N++ F+ +G   V +   +A     D  F +++ G  I  D+   +F  F     
Sbjct: 642 TNLLGNSVKFTERGEVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADG 701

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              RR  G GLGLSI  + + L GG + + S+    +     +P +
Sbjct: 702 STSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLPLE 747


>gi|294646444|ref|ZP_06724085.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|292638215|gb|EFF56592.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
          Length = 957

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 124/663 (18%), Positives = 262/663 (39%), Gaps = 67/663 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +   E      K+    +    LF  +      +   RD+       N   
Sbjct: 310 WFSSLGNIINICIELRKTKDKVIREQTFLNNLFHFMPMGYIRMSIIRDEN------NKPC 363

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +          + NF E +                
Sbjct: 364 DYRVTDANEVSSTFFGLPLESYIGSLASEKHPDYLQKLNFLEEILDSNSYREKDEYFPRT 423

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 424 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYL 483

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E     
Sbjct: 484 IDLNNKDLEIFGVVNKSDVIGVNFFDNPNVPQNIRDRVRNEDLVDFRLNYS--FEQAGGY 541

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y++S ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 542 YETSRSNVIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 598

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCSRYYNESDGW--D 498
           +   G A      ++ L N    ++ +  +N        +  + A  S+ + E      D
Sbjct: 599 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLD 652

Query: 499 LFAAIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVT 546
            +  +    D +R+  QG + +           +S +V+  +  P  N   ++    ++T
Sbjct: 653 FYDGVR---DGKRRHFQGEMRIRRPGTKNEWNWVSSNVMVTNYKPEENEIEIIGINYDIT 709

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++     +++
Sbjct: 710 ELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL---AER 766

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  E  
Sbjct: 767 QEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKE-E 825

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +       +   ++DR R+ Q+ S  ++NAM F+S+GS + +     +G+  F V++ 
Sbjct: 826 VELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDT 884

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +F RFV         G GLGLSI +S +   GG + + S     +    
Sbjct: 885 GIGIEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWF 942

Query: 787 RIP 789
            IP
Sbjct: 943 TIP 945


>gi|255691148|ref|ZP_05414823.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623241|gb|EEX46112.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 934

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 135/733 (18%), Positives = 282/733 (38%), Gaps = 80/733 (10%)

Query: 109 DTDLLSFENWLKFHHYIKLSKATEKLRKEGQ-----SFDLVAETQNDCAIKIEG------ 157
           +  +LS    +  +   +L +   ++R+E       SF +      D      G      
Sbjct: 220 NQQILS-GKAIVLNSLKQLPEEVSEMRREFAERGVYSFMVTPLMAGDHVWGGMGIELIDS 278

Query: 158 -RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQA 212
            R   +  F    SL  I S   E  +   K++   S  + LF  +      +   RD+ 
Sbjct: 279 YRNWSNEDFQWFSSLGNIISICIELRIAKDKVTYEQSFLRNLFHFMPMGYIRMSVLRDEN 338

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
                 N  Y         +     G+  + +   +   + S  + + +F   +  +  G
Sbjct: 339 ------NKPYDYRITDANQISAHFFGKPLEQYVGVLASDLFSDHSEKMDF---ILEVLDG 389

Query: 273 NNK-------------SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNL 315
            +              ++ IV         G+  D ++ +  N  L  + +    I  N+
Sbjct: 390 KSYKEKDEYFPQTGLYTHWIVYSPEKDEVVGLFTDSTEAVEANRALDRSEKLFKNIFANI 449

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEI-------DLAFLATNPSNDELLEFLRSANKLPEQ 368
              + I+D++ YL   N   +E++ I        + F         + + +R+ + +  +
Sbjct: 450 PAGVEIYDKDGYLLDLNNKNLEIFGIANKEDVIGINFFENPNVPQTIRDRVRNEDLVDFR 509

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
           LN+    + I   Y++  ++    +    +   +        G I +  + T ++D   +
Sbjct: 510 LNYS--FDQIKGYYRTMRSNVIELY---SKVTKLYDREGEFIGYILISIDNTERIDAMNR 564

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                       D    G A      ++ L N    ++ +  +N         +      
Sbjct: 565 IRDFENFFLMISDFAKVGYA------KLNLLNRKGYAIKQWYKNMGEEEDIALSDVVGVY 618

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELL-----------SDSVLEYSIIPLPNAQ 537
           R  +  D   L          +RK  QG + +L           + +V+     P     
Sbjct: 619 RKMHPEDRKGLLDFYKEVKVGKRKHFQGEMRILRPGTENEWNWVNTNVMVTQYKPEEGEI 678

Query: 538 TMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            ++    ++T     E  L    +     D +K++F+ ++S+E+R+PL  I+GF+DLL  
Sbjct: 679 EIIGINYDITKLKETEAELIHARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVE 738

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +       ++ +Y++ +  ++ +LL L++DILDL+ ++AG  + ++  + +N L  ++ +
Sbjct: 739 TADI---EERREYMKIVRENNDLLLQLISDILDLSKIEAGTFEFSHGDVDVNLLCEDLVR 795

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           S+  K  E N+++    +  +    +DR R+ Q+ S  ++NA+ F+S+G  + +     +
Sbjct: 796 SMQMKTKE-NVKLVFEPNFSICHITSDRNRIYQVISNFVNNAIKFTSEG-NIRVGYVLKD 853

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F V++ G  I +     +F RFV         G GLGLSI +S +   GGH+ + S
Sbjct: 854 EGLEFYVQDTGIGIEKKQLPHIFERFVKLDSFVH--GTGLGLSICQSIVEQLGGHIGVDS 911

Query: 777 SDEGVTTINCRIP 789
                +     IP
Sbjct: 912 EKGKGSRFWFTIP 924


>gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
 gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
          Length = 1756

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 143/776 (18%), Positives = 270/776 (34%), Gaps = 54/776 (6%)

Query: 56   NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
                + ++E  +    Y S+L       ++ +       +  Q        + +    S 
Sbjct: 499  EALLTDMTEELEAGRWYQSVLDAAPDAILLAEPDGTVVYLNQQAESLTGYLRDELIGQSV 558

Query: 116  ENWLKF----HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS- 170
            E  +      HH                  +L     +   + +E  +S   AF      
Sbjct: 559  EVLVPPASRNHHPQLREAFLSDATARPGGMELALYRADGKKLAVEISLSELPAFAGQQPR 618

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTET 228
            +  I  +++E     +KL      F+ L  ++  +V+    D    + + +   K  +  
Sbjct: 619  IAAIIRDISERHAMDRKLRESEERFRTLVGNIPGVVYRCALDSHWTMAFISDHIKDLSGY 678

Query: 229  EGIVFQKAIGESRK-LFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSY----- 277
                F      S   L   E   R+         A +    E       G  +       
Sbjct: 679  PASDFLNNAKRSFASLIHPEDATRLAEVVKLGVEAGDSWSQEYRIINRRGQVRWVYEKGR 738

Query: 278  -KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRYLQFHNRS 334
                         G   D+++  + + Q+      L  +T ++   +F     LQ  +  
Sbjct: 739  AHYDENGKPMWLDGSIHDITEARSNHQQMLAAKAQLETITESVPGVVF----QLQQDDSE 794

Query: 335  FVELWEIDLAFLAT--NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
                       +      S   +LE L S  +L    +    +  +     S +      
Sbjct: 795  LGIRCSFVSGGIRQALGVSKSRVLENLNSVLELVHPEDRGALETTLKRSADSQQDWSREV 854

Query: 393  HLPNG---QTLHVIVT-SNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                G   Q   V V  S    G +W      N++ +  +E +            D+   
Sbjct: 855  RFVIGGTEQWFSVSVQVSRDDSGALWWNGFLVNISQRKAMEQQLVNSEAHFRALFDNAGI 914

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
             +      G I  +N  F+   + E  +L  G HI  +     R         L A    
Sbjct: 915  AIVTLNKLGVIGEANERFQQFAELEPEQL-IGQHISQLLPAEDRDSFNQSLAPLLAGEQR 973

Query: 506  SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNE 560
                E +  +    L      +   + L + Q      +LT  +VT+  +   AL +  E
Sbjct: 974  HLAQEMRYRKPDGSL---RWADMRAVVLKDYQGGLSALVLTMSDVTERRQINEALRQAKE 1030

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            A   A + K  F+ ++S+E+R+P+  IIG T L   +    L  +Q+ Y+  I ++S  L
Sbjct: 1031 AADAASKAKTDFLANMSHEIRTPMNAIIGMTQLCLQT---DLPPRQADYLRKIDSASQSL 1087

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
            L ++ND+LD + ++AG ++L      L++LL ++    A +  E  + +    + ++ + 
Sbjct: 1088 LGIINDVLDYSKIEAGRLELEQEPFALDELLEQLSDLFAVRAKEKGVELLFAVEPEVPAR 1147

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDM 734
               D  RL QI   +LSNA+ F+  G  V+     D          FSV++ G  +  + 
Sbjct: 1148 LNGDMLRLGQILINLLSNAIKFTDHGEVVLAIRQLDGAPPGQTRLTFSVRDTGIGMSPEQ 1207

Query: 735  CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F        R   G GLGL+I +  ++L GG + ++S+    +T +  I
Sbjct: 1208 QARLFQSFSQADSSTTRKYGGTGLGLAISQRLVSLMGGQIQVNSAAGAGSTFHFSI 1263



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 103/336 (30%), Gaps = 53/336 (15%)

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID---VSKEITVNDQLTHTY 309
              +   +     V  L+HG+     +  +     E   A+D   +S    + ++     
Sbjct: 331 RRIARPLEQLRHRVIALQHGSR---SLTALKVPGTEEIQALDQGLLSMAEALKERELRLQ 387

Query: 310 EI----LHNLTVAI---AIF---DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           +     L  L   +   A +   D +  +   + S   +        A            
Sbjct: 388 DAHGSRLAKLLEGMGDTAFYYAMDPDGKVLHASDSVKAVLGYSPEEFARR---------- 437

Query: 360 RSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG---G 411
                + +++N  +W+ +      ++   H       NG+         P    +G   G
Sbjct: 438 YPRLFVDDEINESSWRYQEQLMQGQAVPPHPLALRHENGEVRQFSAYMQPVTDVQGDLLG 497

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +  ++T +++    Y          +D   + + +  PDG +   N    SL     
Sbjct: 498 IEALLTDMTEELEAGRWYQ-------SVLDAAPDAILLAEPDGTVVYLNQQAESLTGYLR 550

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL--EYS 529
           + L  G  +  +    SR ++      L  A ++        ++  L       L  E S
Sbjct: 551 DEL-IGQSVEVLVPPASRNHH----PQLREAFLSDATARPGGMELALYRADGKKLAVEIS 605

Query: 530 IIPLP-----NAQTMLTFVNVTDSVRAERALTEKNE 560
           +  LP       +      ++++    +R L E  E
Sbjct: 606 LSELPAFAGQQPRIAAIIRDISERHAMDRKLRESEE 641


>gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 1034

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 120/702 (17%), Positives = 234/702 (33%), Gaps = 56/702 (7%)

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC-K 186
             A E+ R  G++            + + G           +   G              
Sbjct: 181 RAALEQARDSGEA-----TASAPTTLVVSGEP--GFLIFWPVYRSGAAINTVALRRDNIT 233

Query: 187 KLSNHISVFKVLFDSLDFLVWHRD------QAGDILWANISYKKNTETEGIVFQKAIGES 240
                +   + L ++       RD        G    A   Y     +       +    
Sbjct: 234 GYVIGMFRLRDLVETAVQASKLRDLDIYLFDEGLPEDAPPFYVHAAFSRPEALDTSNISL 293

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK----IVRVLNSFGEAGIAIDVS 296
            +L K+      I  +   +N+   ++               I  ++       IA  ++
Sbjct: 294 SELIKQAPYSSRIGMA--GRNWRLIINPAPSYEASRLDSIPWIALLIALLSTFAIAYAMA 351

Query: 297 KEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +    DQL H+      L      A AI   +  +++ + ++  +            + 
Sbjct: 352 HQQHAADQLRHSERRFRILIDKGGNAFAIIAADGTVRYTSPNYERILGYPSGSRLGRSTF 411

Query: 353 DEL--LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +   +   +     E L+      ++    +        WH       ++I      G
Sbjct: 412 ELIHHEDQGEAQRLFSELLSKPGESRSLQMRVRY---FNGAWHWIETTATNLIDEPE-IG 467

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G +    ++      E       +     +    +G  +     R    N A+  +    
Sbjct: 468 GVLANVRDINDYKQAELALRENERRLRTILQTAQDGFMILDLQLRFLEVNDAYCGMSGYT 527

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L  G  I N+ A  +     +    +    I  F+   +   G+   +    +    
Sbjct: 528 RAELLNGMTIFNVEAFEAYEQIHAHAHRIMTQGIDLFETRHRRKDGSTFHVE---ISVHY 584

Query: 531 IPLPNAQTMLTFVNVTDSVRAERA------------------LTEKNEALRKADEIKNSF 572
           I       +    ++TD  R E                    L+  N  L +A   K+ F
Sbjct: 585 IDSDGGVMVCFCRDITDRKRREAEIRHLNSELEQRVAERTADLSRTNAELNRALRTKDEF 644

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+ELR+PL  I+ F++LL+    G +N +Q + ++YI +S   LL L+NDILDL+ 
Sbjct: 645 LATMSHELRTPLNGILSFSELLQEEISGPINEQQRRSLQYIESSGRHLLALINDILDLSK 704

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           V+AG M+++     + ++       +    +   +++       L     D +RL Q+  
Sbjct: 705 VEAGRMEIHSEIYSVVEICEASLLFVKELANRKGLQVGFSCSDNLAIIEVDAKRLKQMLI 764

Query: 693 KILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
            +LSNA+ F+  G  V+L+   D   G   F V + G  I  +  + +F  F        
Sbjct: 765 NLLSNAVKFTPDGGQVLLEVTTDATAGVIRFVVSDTGIGIKAEDMERLFRPFTQLDSSLS 824

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
            Q  G GLGL++V    +L GG + + S  +         +P
Sbjct: 825 RQHEGTGLGLALVRRLADLMGGSIGVESDGEGQGCRFILALP 866


>gi|288941099|ref|YP_003443339.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896471|gb|ADC62307.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1650

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 115/667 (17%), Positives = 246/667 (36%), Gaps = 66/667 (9%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            + GI  ++ E     + L    S  + +  +   L++ +D     +W +        +  
Sbjct: 617  VGGIALDITERRKIERALEERESRLQFIIANSPDLIFIQDLEQRYIWLSH------PSAP 670

Query: 231  IVFQKAIGE-SRKLFKEEIKKRMIS----SSALEKNFCETVSTLEHGNNKSYKIVRVL-- 283
            +  +  +G   R L   E   R++          +     +     G  + +        
Sbjct: 671  LRPEDCLGHTDRDLLLPEEGARLMRIKQDVLDTGRRTTIELPLTLDGQRRVFDATYEPWR 730

Query: 284  ----NSFGEAGIAIDVSKEITVNDQLTHTYEILH---NLTVAIA-IFDQNRYLQFHNRSF 335
                   G AG   D+++            + LH         A  +D +  + + +   
Sbjct: 731  DANGTLVGLAGYVRDITERKQAEIAHQADNQRLHWALQAAHGGAWDWDLSTDVAWWSPEM 790

Query: 336  VELWEIDLAF-LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              LW ++    +  + S   + +  R++ +   +   +  ++           H + W  
Sbjct: 791  YALWGVEPETKMVLDNSLSLVADQDRASLRANVERAIQDGRDLQCEFRIRHPQHGERWMA 850

Query: 395  PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
              G    ++  ++     + +  ++T Q  +E           + +++++  +    PDG
Sbjct: 851  SWG---RLVTDADGLSHLLGLSFDITDQKRMEQALKDSESRYRDLVENVNSVILRLAPDG 907

Query: 455  RIKLSNPAFRSLWKTEENRLSPGT-----------------HIRNIAATCSRYYNE---- 493
             I  +N      +      L                      ++ I A   RY +     
Sbjct: 908  LIAFANEYALRFFGYAAEELIGRPVTVLVPTVDSTGQNLSAMVQEILANSERYVHHINEN 967

Query: 494  ---SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                      A    +  D+R  L G L + +D      +      Q +       +++ 
Sbjct: 968  LCHDGRRVWMAWTNKALYDDRGRLIGVLAVGNDITERRRL-----EQELDRHRRHLEALV 1022

Query: 551  AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             ER   LTE       A++ K++F+ ++S+E+R+P+  ++GF  LL+   L   ++    
Sbjct: 1023 DERTAQLTEARARAEAANQAKSAFLANMSHEIRTPMNAVLGFCYLLEQHALDPASA---D 1079

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             V  I  +   LL+L+NDILD + ++AG ++L  +   L++LL+ +   +     +  + 
Sbjct: 1080 LVRKIHNAGQALLDLINDILDFSKIEAGRLELEAAPFRLSELLDTLAGIMTAAAGDKPLE 1139

Query: 669  IKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSV 723
            + +      +   + D  RL Q+   +L NA+ F+++G     +   A  D+  +  F+V
Sbjct: 1140 LILTPPEADIEGLIGDAGRLRQVLINLLGNAIKFTARGEVELRIECLAEHDDAVELRFAV 1199

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++ G  I  +  + +F  F        RR  G GLGLSI    + L GG + I S     
Sbjct: 1200 RDTGIGIDPESQERLFQPFTQADVSTTRRFGGTGLGLSISRQLVRLMGGTLEIESQPGQG 1259

Query: 782  TTINCRI 788
            +T +  +
Sbjct: 1260 STFHFSL 1266



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/399 (14%), Positives = 115/399 (28%), Gaps = 56/399 (14%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG------ESRK 242
               + F+   D    L W +D  G  ++AN  ++++       +Q          E  +
Sbjct: 510 RETENRFRSFMDHTPVLAWLKDDQGRHVYANRGFEQHFRLNWEDWQGKTDFELWPIEIAE 569

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS-----YKIVRVLNSFGEAGIAIDVSK 297
           +F+   ++ + +  ALE       S    G         +            GIA+D+++
Sbjct: 570 VFRRNDQQVLATGQALETIEE---SVDPDGQPHFWLTTKFTFDDQTGQTFVGGIALDITE 626

Query: 298 EITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
              +   L      L     N    I I D  +   + +        +       +   D
Sbjct: 627 RRKIERALEERESRLQFIIANSPDLIFIQDLEQRYIWLSHPSA---PLRPEDCLGHTDRD 683

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-------DTWHLPNGQTLHVIVTS 406
            LL    +     +Q    T +     +  + +  +       + W   NG  +      
Sbjct: 684 LLLPEEGARLMRIKQDVLDTGRRTTIELPLTLDGQRRVFDATYEPWRDANGTLV------ 737

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G      ++T +   E  +    +     +     G   +     +   +P   +L
Sbjct: 738 ----GLAGYVRDITERKQAEIAHQADNQRLHWALQAAHGGAWDWDLSTDVAWWSPEMYAL 793

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---------RKSLQGT 517
           W  E          + +         + D   L A +  +  D          R    G 
Sbjct: 794 WGVEPET-------KMVLDNSLSLVADQDRASLRANVERAIQDGRDLQCEFRIRHPQHGE 846

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
             + S   L      L  +  +    ++TD  R E+AL 
Sbjct: 847 RWMASWGRLVTDADGL--SHLLGLSFDITDQKRMEQALK 883


>gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 514

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 91/360 (25%), Positives = 159/360 (44%), Gaps = 11/360 (3%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           E ++   +G  VF  D  + L N  F  +     + + PGT   +     +    E    
Sbjct: 17  EAVEEFGQGFTVFDRDLNLILCNNRFLEMLDFPPSLIHPGTVFADFMRYNA-MRGEYGPG 75

Query: 498 DLFAAIITSFDDERKSLQG--TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           D+ A +    +  R         E    +V+E    PLP    + T+ ++TD  RAER L
Sbjct: 76  DVEALVAERVERARNFAPHCFERERPDGTVVEVRGTPLPGGGFVTTYTDITDRKRAERML 135

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               +   +   +K +F+  +S+E+R+P+  ++G   LL       L   Q  ++E   +
Sbjct: 136 IHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLL---TGSPLTPDQRDHLETAQS 192

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  LL ++NDILD + ++AG MKL  +   L+ LL E+   +     +  + + +    
Sbjct: 193 SARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAARDKGLTLSLRIAD 252

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIFSVKNNGSSIPE 732
            +  +   D  RL Q+ + ++ NA+ F+ KG   V ++    D+    F V + G  I  
Sbjct: 253 TVPRYQAGDPTRLRQVLTNLMGNAVKFTEKGDVAVSVEPEESDSSRLRFEVADTGIGIEP 312

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               ++F+ FV       RR  G GLGLSI +  + + GG +   S     TT +  +P 
Sbjct: 313 AAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSIPGEGTTFHFTLPL 372



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 1/134 (0%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
            H  E +        +FD++  L   N  F+E+ +   + +       + + +     + 
Sbjct: 13  RHLIEAVEEFGQGFTVFDRDLNLILCNNRFLEMLDFPPSLIHPGTVFADFMRYNAMRGEY 72

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
               + +          ++   H      P+G  + V  T  P GG +  + ++T +   
Sbjct: 73  G-PGDVEALVAERVERARNFAPHCFERERPDGTVVEVRGTPLPGGGFVTTYTDITDRKRA 131

Query: 426 ETKYNTLVKVQGET 439
           E           ET
Sbjct: 132 ERMLIHAKDKAEET 145


>gi|153868800|ref|ZP_01998541.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152074617|gb|EDN71454.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 1054

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 123/676 (18%), Positives = 262/676 (38%), Gaps = 87/676 (12%)

Query: 167  RILSLDGIYSELAETTLKCKKLSNHI----SVFKVLFDSLDFLVWHRDQAG-DILWANIS 221
            R   L     E+ +  +  + L+  +      ++ L +S+D +VW  D       + +  
Sbjct: 371  RTAELSQRIQEIEQQKIGIQNLAEDLVASQQRYESLVNSIDGVVWEGDANTFQFQFVSQH 430

Query: 222  YKKNTETEGIVFQKAIGESRKLFKEE---IKKRMISSSALEKNFCETVSTLEHGNNKSY- 277
             ++        + K    +  +  ++        ++++  +++       +   N   + 
Sbjct: 431  TQRILGYPSEDWLKPRFWADHIHPDDREWATTYCVNATKNKQDHSFEYRMITADNRTIWL 490

Query: 278  -KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNL----TVAIAI----FDQ 324
              +V V+    +A    G+  D+++       L  + E    +     + + I    F  
Sbjct: 491  RDLVTVVVENDKAVKLYGVMFDITESKQAEKALRQSEEQFRKMFEEGPIGMVIATPSFPS 550

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE--QLNWKTWKENIFSVY 382
              +++  N +F ++     A         ELL+   +    P+   +N +  ++ +    
Sbjct: 551  FSFIK-ANAAFCQMLGYTEA---------ELLQLNGADITYPDDMPINRELLQKALNGEI 600

Query: 383  KSSETHKDTWHLPNGQTLH----VIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKV 435
             S    +  +   +G+ +     V +  N  G   +     E++T +   E         
Sbjct: 601  -SFYQMEKRYIRKDGKLVWGNLAVSLFHNDEGKVTFFLGKVEDITERKHAEESLRR---- 655

Query: 436  QGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                +D+ ++ + +           N           N L               Y+ ++
Sbjct: 656  FRAALDNSADAIFIVDRQTMNFVDMNKIACDSIGYSYNELLSMGP-----QDIKPYFTKA 710

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----------AQTMLTFVN 544
                 F  II S        QGT+E +     + +  P+ N             + +  +
Sbjct: 711  QLATKFDEIIQS------ECQGTIETVHQR-KDGTEFPVENFLQSLKFDEGYLLISSARD 763

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +T+  +AE AL +  E    A+  K+ F+ ++S+E+R+P+  +IGF+D+L +      + 
Sbjct: 764  ITEHKQAEIALIQAKEQADSANRAKSEFLANMSHEIRTPMNAVIGFSDILASKV---TDK 820

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            KQ  Y++ I  +   LL L+NDILDL+ ++AG + + Y  + L  +  E++Q  + KM E
Sbjct: 821  KQKTYLDSIQTAGKSLLTLINDILDLSKIEAGRLDIQYEPVNLQLIFTELQQIFSLKMAE 880

Query: 665  NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
             N+   + +D  L   +  D  RL Q+   ++ NA+ F+  G    +K   + G      
Sbjct: 881  KNLEFILETDETLPPVLFLDETRLRQMLLNLMGNAIKFTDSG---YIKLCANKGSTENDH 937

Query: 718  ---DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
               D I +V+++G  IP +    +F  F         Q  G GLGL+I +  + +  GH+
Sbjct: 938  SQVDLILAVEDSGIGIPAEQQALIFESFRQQDGQSTRQYGGTGLGLAITKRLVEMMNGHI 997

Query: 773  SISSSDEGVTTINCRI 788
            ++ S     +     +
Sbjct: 998  TVESHPGKGSRFEIAL 1013



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 60/439 (13%), Positives = 134/439 (30%), Gaps = 59/439 (13%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
             + ++     +   ++     +Y SL+   +   +VW+G            Q   + Q 
Sbjct: 380 QEIEQQKIGIQNLAEDLVASQQRYESLVNSIDG--VVWEGD-------ANTFQFQFVSQH 430

Query: 109 DTDLLSF--ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND------CAIKIEGRVS 160
              +L +  E+WLK   +       +  R+   ++ + A             I  + R  
Sbjct: 431 TQRILGYPSEDWLKPRFWADHIHPDD--REWATTYCVNATKNKQDHSFEYRMITADNRTI 488

Query: 161 GSCAFL-------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD--- 210
                +       + + L G+  ++ E+    K L      F+ +F+     +       
Sbjct: 489 WLRDLVTVVVENDKAVKLYGVMFDITESKQAEKALRQSEEQFRKMFEEGPIGMVIATPSF 548

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI--KKRMISSSALEKNFC--ETV 266
            +   + AN ++ +          +  G       +    ++ +  +   E +F   E  
Sbjct: 549 PSFSFIKANAAFCQMLGYTEAELLQLNGADITYPDDMPINRELLQKALNGEISFYQMEKR 608

Query: 267 STLEHGNNKS--YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIA 320
              + G        +    N  G+     G   D+++     + L      L N   AI 
Sbjct: 609 YIRKDGKLVWGNLAVSLFHNDEGKVTFFLGKVEDITERKHAEESLRRFRAALDNSADAIF 668

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           I D+         +FV++ +I    +    S +ELL       K          K +   
Sbjct: 669 IVDRQTM------NFVDMNKIACDSIGY--SYNELLSMGPQDIKPYFTKAQLATKFDEII 720

Query: 381 VYKSSETHKDTWHLPNGQTLHVI----VTSNPRGG-TIWMFENLTVQVDLE-------TK 428
             +   T +      +G    V           G   I    ++T     E        +
Sbjct: 721 QSECQGTIETVHQRKDGTEFPVENFLQSLKFDEGYLLISSARDITEHKQAEIALIQAKEQ 780

Query: 429 YNTLVKVQGETIDHLSEGV 447
            ++  + + E + ++S  +
Sbjct: 781 ADSANRAKSEFLANMSHEI 799


>gi|117923548|ref|YP_864165.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607304|gb|ABK42759.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1116

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 112/663 (16%), Positives = 239/663 (36%), Gaps = 63/663 (9%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW-HRDQAGDILWANISYK------K 224
             +  E+         L           +      W    +   + W +  Y+      +
Sbjct: 317 SNLLKEIRSRQHAEDSLKESQKALLEAQNIAQVGNWTWTIETNTLSWTDEIYRIFGLIPQ 376

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL- 283
            T      F  AI    +LF +    + +            +           ++ RV  
Sbjct: 377 ETPPTYQAFLSAIHPEDRLFVQNAVNQALEQLNTPYQVEHRIIRPNGDLRTVVELGRVER 436

Query: 284 ----NSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIA----IFDQNR----- 326
                 F   G   D++        L         +  ++    A    +F+++      
Sbjct: 437 DQQGTPFRMIGTVQDITARKQTEALLLSSEIRFRSLFDSMNEGGALHAMVFNEHGNPIDY 496

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            +   N+++ E+  I         + ++    L +         +      +    +S  
Sbjct: 497 RILEVNKAYTEILGI---------TKEQAEGRLATEIYGQTSPPYLELYNRVVKTGQSLR 547

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK-------VQGET 439
              +T + P  +   + V S        +F ++T +     K N  +             
Sbjct: 548 F--ETEYSPMVRNFEISVFSPGENQFATVFTDITERKKTLQKLNGALDELEKKSNFLQSL 605

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           + +L + + +  P+G     NPAF     ++E ++   T    +    + ++  +D    
Sbjct: 606 VQNLPDLIWMKDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFVDQKLADFFRMND---- 661

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERA 554
             AI        +           ++LE +  P+ + Q      +    ++T + +AE+ 
Sbjct: 662 LLAIEKGGPVINQEWVTFAADGHKALLETTKTPMFDKQGRIIGVLGVAHDITATKQAEQD 721

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E    A + K+ F+  +S+E+R+P+  IIG +D+L  +    ++ +Q  ++  + 
Sbjct: 722 LIHAKEKAEAAYQAKSEFLATMSHEIRTPMNVIIGLSDILMET---PIDHEQRDHLLRLQ 778

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VI 672
            ++  LL+LV+ ILDL+ ++A  + L    + L  ++ E    ++    +  +R++  V 
Sbjct: 779 KANKTLLDLVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIVADQKGLRLESQVT 838

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
                   + D  R+ QI   ++ NA+ F+ KGS  V L+   D  +       VK+ G 
Sbjct: 839 QATDDYWSLGDESRIRQILVNLIGNAVKFTEKGSIWVTLELFTDTLERTLVRLCVKDTGI 898

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +  +++F++F         +  G GLGL+I    I L GG V + S+    +    
Sbjct: 899 GIGPEHLETIFDKFTQVDSSYARRYSGTGLGLAITRRIIQLMGGKVWVESNPSQGSLFCV 958

Query: 787 RIP 789
            +P
Sbjct: 959 ELP 961



 Score = 45.3 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
              +      L +      +L    +  + L  +L  L+W +D  G  L  N ++++   
Sbjct: 575 FTDITERKKTLQKLNGALDELEKKSNFLQSLVQNLPDLIWMKDPEGVFLTCNPAFERFV- 633

Query: 228 TEGIVFQKAIGESRKLFKEE---IKKRMISSSALEKNF----CETVSTLEHGNNKSYKIV 280
             G   Q+  G++   F ++      RM    A+EK       E V+    G+    +  
Sbjct: 634 --GSQEQQIKGKTDYDFVDQKLADFFRMNDLLAIEKGGPVINQEWVTFAADGHKALLETT 691

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQLTHTYE 310
           +           G  G+A D++        L H  E
Sbjct: 692 KTPMFDKQGRIIGVLGVAHDITATKQAEQDLIHAKE 727


>gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 713

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 104/499 (20%), Positives = 195/499 (39%), Gaps = 41/499 (8%)

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELW-EIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            ++  +   I + D    +   N +  E++       L  N                P+ 
Sbjct: 236 RLMEKMNDGIIVVDNKERIVDINPAAKEIFSNKPEKLLGKNI-----------GQLFPDL 284

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQV 423
            +     +   +VY+     ++ W      T ++ +T          G + +  N++   
Sbjct: 285 KSTVGKNDLCGNVYR----EQEIWRNEVKNTYNIHITPLADEQGNPLGKLILLHNISELK 340

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN--------RLS 475
             E       +     + +  E V ++  + R    N     +               L 
Sbjct: 341 KTEEILRESEEKYRAIVSNTHEMVYIYCGE-RFLFVNDRICEVTGYTREEIDSMKVLDLV 399

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                  I     +  +  D    F   I +    +++++  +          +I     
Sbjct: 400 HPEEKEKIRQIMQKRADCKDAPATFETCIVTKKGRKRNVEIAIS---------NITYEGE 450

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             ++ +  ++T+    E AL +       AD  K+ F+  +S+ELR+PL +IIGF+ +L 
Sbjct: 451 YASLGSARDITERKENENALIQAKMKAEVADRTKSEFMTTMSHELRTPLNSIIGFSQMLL 510

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L +   +YV  I  S   LL+L+NDILD++ V+AG  ++      ++  L +V+
Sbjct: 511 EVPGSELTNAHHKYVSNILKSGKSLLHLINDILDISKVEAGKKEVEAEFFDIHKALYDVE 570

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             I     + NI I V  +       AD     Q+   IL+NA  F+++   V + A   
Sbjct: 571 MLIRPLASKKNIDIIVDYENANNLLYADVIMFKQVMYNILNNATKFTAEKGKVFVTAKSG 630

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             +   SVK+NG  I ED  + VF  F    +A   +  G GLGL++V S++ +HGG+V 
Sbjct: 631 EKETSISVKDNGIGIAEDKKEMVFEPFKQIDSAKNRRYEGTGLGLALVRSYVEMHGGNVW 690

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S +   +T    IP ++
Sbjct: 691 VESEEGKGSTFIFTIPQQD 709



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 15/146 (10%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            +   ++ +++G+ V     RI   NPA + ++  +  +L      +NI        +  
Sbjct: 233 ARDRLMEKMNDGIIVVDNKERIVDINPAAKEIFSNKPEKLLG----KNIGQLFPDLKSTV 288

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
              DL   +    +  R  ++ T  +         I PL + Q       +     +E  
Sbjct: 289 GKNDLCGNVYREQEIWRNEVKNTYNI--------HITPLADEQGNPLGKLILLHNISE-- 338

Query: 555 LTEKNEALRKADEIKNSFVQHVSYEL 580
           L +  E LR+++E   + V + ++E+
Sbjct: 339 LKKTEEILRESEEKYRAIVSN-THEM 363


>gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1235

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 103/503 (20%), Positives = 201/503 (39%), Gaps = 21/503 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                +      +L ++  AI   D+       N++   +     + L      + +   
Sbjct: 451 ERREREYALLRSLLDSIPEAIVFKDKEGKYLGCNKAAERMLGYTESELIGQ---ESIKLT 507

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
            +  +   +  + +   E     Y+          L +   L          G I ++ +
Sbjct: 508 TQEQSVRIKAEDERVLAERTPLRYQEKVEFAGKPVLLDTLKLPFYNRRGELLGLIAVWRD 567

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T + +   +     +     +D + +G+  +  D +  + NPA+ S+   + N      
Sbjct: 568 VTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALV 627

Query: 479 H-IRNIAATCSR----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             + ++     R     Y E    D   A    F    KS Q    L    V+EY++   
Sbjct: 628 STLDDLIHPDDRIRVQEYREQYLGDPIGAFDVEFRMRGKSGQYHWLLSRGRVVEYTVDNQ 687

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   L
Sbjct: 688 P-KRMVGTHKDITRHKSNEVALLEAKQDAESANLSKSEFLANMSHEIRTPMNAIIGMLQL 746

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            + ++   L +KQ  Y++    S+  LL ++NDILD + ++AG ++L      L+ +L+ 
Sbjct: 747 AQRTE---LTAKQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDH 803

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                A K  +  + + + +    G  +  D  RL Q+   +LSNA+ F+  G  + L  
Sbjct: 804 ALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGE-IELGC 862

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
                        F V++ G  I ++   S+F+ F        R   G GLGLSI +  +
Sbjct: 863 EDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLV 922

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
           ++ GG + + S     +T +  I
Sbjct: 923 SMMGGQMQVQSEMGVGSTFSFTI 945



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 88/283 (31%), Gaps = 20/283 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +    A      ++     ++ + L DS+   +  +D+ G  L  N + ++         
Sbjct: 439 VARRTARLKETTERREREYALLRSLLDSIPEAIVFKDKEGKYLGCNKAAERMLGYTESEL 498

Query: 234 --QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NS 285
             Q++I  + +     IK       A              G       +++         
Sbjct: 499 IGQESIKLTTQEQSVRIKAEDERVLAERTPLRYQEKVEFAGKPVLLDTLKLPFYNRRGEL 558

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFHNRSFVELWEI 341
            G   +  DV++E    +QL  + E  H    A+   ++D   +      N ++  +   
Sbjct: 559 LGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSKQIICNPAYYSMLGY 618

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK-----SSETHKDTWHLPN 396
                    S   L + +   +++  Q   + +  +    +        ++ +  W L  
Sbjct: 619 KSNEFPALVS--TLDDLIHPDDRIRVQEYREQYLGDPIGAFDVEFRMRGKSGQYHWLLSR 676

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           G+ +   V + P+   +   +++T     E       +     
Sbjct: 677 GRVVEYTVDNQPK-RMVGTHKDITRHKSNEVALLEAKQDAESA 718



 Score = 44.5 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 65/241 (26%), Gaps = 29/241 (12%)

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN--WKTWKENIFSVY 382
                F N +   L  ++   L                   PEQ++  W+ W + +  ++
Sbjct: 373 QTRRSFVNPASRLLTHLESCSLEPRKP--------------PEQISQGWEPWFQLVSRIF 418

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           + +  +       N +   ++     R              +   +      +    +D 
Sbjct: 419 EENLQYTKHLAEQNRRLDKLVARRTAR------------LKETTERREREYALLRSLLDS 466

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + E +     +G+    N A   +    E+ L     I+      S      D   L   
Sbjct: 467 IPEAIVFKDKEGKYLGCNKAAERMLGYTESELIGQESIKLTTQEQSVRIKAEDERVLAER 526

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +  E+    G   LL    L +          +  + +VT    +   L    E  
Sbjct: 527 TPLRYQ-EKVEFAGKPVLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERY 585

Query: 563 R 563
            
Sbjct: 586 H 586


>gi|332702934|ref|ZP_08423022.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553083|gb|EGJ50127.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 938

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 132/813 (16%), Positives = 282/813 (34%), Gaps = 99/813 (12%)

Query: 51  LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD----ETPEI----------- 95
           LA++     + +    D+L+ Y  ++     L + +  +       P I           
Sbjct: 4   LARENERLRAEI----DRLAIYRDMIENAPDLVMRFSAEGRVLFANPAIEGLTGLRPKMT 59

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF--DLVAETQNDC-- 151
           +G   Q I  PQ D++              ++ +A  ++   GQ    ++   T      
Sbjct: 60  LGLTPQEIGFPQEDSE--------------RIHQAVLEVIATGQGLLDEVTLYTLQGEVI 105

Query: 152 -----AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
                A++ + +  G+       ++           L  ++     S    +  S+   V
Sbjct: 106 LQFRYALQRDAQGHGAAVLGFARNITREKRLERSHRLAKEQAEALASEVSTILASMVDGV 165

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
                 G++ + N + +   +        ++ +   L + E     +        F    
Sbjct: 166 GVYGPGGELRYMNRAGEAILDRSLEERCMSMRDRWALLRLETPDGHVLPDDQRPVFRALQ 225

Query: 267 STLEHGNNKSYK-----------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----- 310
               H      +              + N+ G    A+   K++T    L    E     
Sbjct: 226 GETVHYEQLVIRRGCGGKLICLSAAPIRNAEGTLLGAVATFKDMTHKHALEQQREELLAA 285

Query: 311 ----------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
                     +  +    I + D    L   N +   +   +   +       E    LR
Sbjct: 286 LKAERALLQAVFKSAPGGILVTDPFGRLTMANPAADNIRG-EPYPIGRTVWEIEDFTILR 344

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTI 413
              +   +      +  +    + SE  + ++  PNG    ++  + P         G +
Sbjct: 345 PDGRPWPKDELPLERSALHG--EISERVRMSFIQPNGARREILCNTAPIRDEQDRPTGAV 402

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +F+++T   +               ++++ + +            N A+          
Sbjct: 403 GVFQDITELCETMEALRVSRNEIRTLVENVPDLIVRVDRQYCRTYINHAWEKYTGRSAAE 462

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIP 532
               THI          Y       L  A  T    ER+S   +    L  + L   IIP
Sbjct: 463 YIN-THITEPFLPERADYLVPYRKALDEAFATG---ERRSFDCSYRTRLGVAHLSTFIIP 518

Query: 533 LPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       ++   +VT     E  L +  E   +A   K+ F+ H+S+E+R+PL  +
Sbjct: 519 EFSSDGEVESALVLARDVTALKALEHELRQAKEIAEEASRAKSEFLAHMSHEIRTPLNGM 578

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G T+L   ++  +L  +   ++     S   LL L+NDILDL+ ++AG +++      L
Sbjct: 579 LGMTEL---AESATLEERTRHFLHLARESGNHLLGLINDILDLSRIEAGELRIERYGFDL 635

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
              +  + +S++    +  + ++   D  + +  + D  RL QI   ++ NA+ F+ +G 
Sbjct: 636 RVEVRLLAESMSVLAEQKGLLLECRLDELIPNDLLGDAGRLRQILVNLVGNALKFTRQGG 695

Query: 707 TVILKAARD-------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++L    +       +   +FSV + G  I +   +++F  F    +  ++ G GLGLS
Sbjct: 696 VLLLVEMEETRAVGQGDIRLLFSVSDTGIGIDKATFRTIFENFTRLDNSAEQVGTGLGLS 755

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I    + + GG + + S     +T +  +P  +
Sbjct: 756 ICRRLVEMMGGRIWLESEVGVGSTFHVSLPFGQ 788



 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 144/426 (33%), Gaps = 47/426 (11%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI---- 231
           ++LA    + +   + +++++ + ++   LV      G +L+AN + +  T         
Sbjct: 2   ADLARENERLRAEIDRLAIYRDMIENAPDLVMRFSAEGRVLFANPAIEGLTGLRPKMTLG 61

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN-----NKSYKIVRVLNSF 286
           +  + IG  ++  +   +  +   +  +    E       G        + +     +  
Sbjct: 62  LTPQEIGFPQEDSERIHQAVLEVIATGQGLLDEVTLYTLQGEVILQFRYALQRDAQGHGA 121

Query: 287 GEAGIAIDVSKEITVNDQLTHTYE-----------ILHNLTVAIAIFDQNRYLQFHNRSF 335
              G A ++++E  +        E           IL ++   + ++     L++ NR+ 
Sbjct: 122 AVLGFARNITREKRLERSHRLAKEQAEALASEVSTILASMVDGVGVYGPGGELRYMNRAG 181

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             +  +D +      S  +    LR   + P+       +  +F   +    H +   + 
Sbjct: 182 EAI--LDRSLEERCMSMRDRWALLR--LETPDGHVLPDDQRPVFRALQGETVHYEQLVIR 237

Query: 396 NGQTLHVIVTS-----NPRG---GTIWMFENLTVQVDLETKYNTLV-------KVQGETI 440
            G    +I  S     N  G   G +  F+++T +  LE +   L+        +     
Sbjct: 238 RGCGGKLICLSAAPIRNAEGTLLGAVATFKDMTHKHALEQQREELLAALKAERALLQAVF 297

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN--IAATCSRYYNESDGWD 498
                G+ V  P GR+ ++NPA  ++             I +  I     R + + D   
Sbjct: 298 KSAPGGILVTDPFGRLTMANPAADNIRGEPYPIGRTVWEIEDFTILRPDGRPWPK-DELP 356

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAER 553
           L  + +     ER  +       +   +  +  P+ + Q   T     F ++T+      
Sbjct: 357 LERSALHGEISERVRMSFIQPNGARREILCNTAPIRDEQDRPTGAVGVFQDITELCETME 416

Query: 554 ALTEKN 559
           AL    
Sbjct: 417 ALRVSR 422



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 14/166 (8%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +L  + +        + +  + I++  + V  F  +GR+  +NPA   L      +++ G
Sbjct: 3   DLARENERLRAEIDRLAIYRDMIENAPDLVMRFSAEGRVLFANPAIEGLTGLRP-KMTLG 61

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPN 535
              + I       + + D   +  A++      +  L       L  + +L++      +
Sbjct: 62  LTPQEIG------FPQEDSERIHQAVLEVIATGQGLLDEVTLYTLQGEVILQFRYALQRD 115

Query: 536 AQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           AQ      +    N+T   R ER+     E         ++ +  +
Sbjct: 116 AQGHGAAVLGFARNITREKRLERSHRLAKEQAEALASEVSTILASM 161


>gi|312890877|ref|ZP_07750406.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311296660|gb|EFQ73800.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 818

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 106/546 (19%), Positives = 219/546 (40%), Gaps = 46/546 (8%)

Query: 273 NNKSYKIVRVLNSFGEA---------GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD 323
           + +  +I R+      A         G+      +  + + +      + NL  A+ + D
Sbjct: 14  DRQQLEITRLNQELALAKNSGLPACNGLGDKRDADSHLAETVFRLSATISNLNEAVLLED 73

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL----NWKTWKENIF 379
           +NR +   N SF +++ +         ++ + L  L       E      +   +   I 
Sbjct: 74  ENRKIVLANASFCKMFNL--------KADPQSLVGLDCRGSAEESKFHFKDEAGFVVRIE 125

Query: 380 SVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGG----TIWMFENLTVQVDLETKYNTLVK 434
           ++ K  +T   D   L +G+ L+         G     +W + ++T Q   +       +
Sbjct: 126 NLLKDRKTAVGDVLELKDGRILNRDFIPINIAGNYIGHLWKYLDITEQKIAQDAIRRREE 185

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                I++++ G+     +  I  +N +F  +     N L      +           + 
Sbjct: 186 KYRRIIENMNLGLLEVDTEECIIFANQSFCDITGFLPNELIGVNAAKLFLGNRDEESMKE 245

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSV 549
                   I  +++ + K+  G         +  S  PL + Q     ++   +++T   
Sbjct: 246 KRELRKQGISDAYELKIKTKAG-----DHKWMLISGAPLYDDQKKLTGSIGIHLDITGQK 300

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  L E  +   ++   K  F+ ++S+E+R+P+  I+G + LL  +   + NS+Q  Y
Sbjct: 301 RLESDLIEAKKIAEESSRAKEIFLANMSHEIRTPINAILGLSRLLTKT---TQNSQQRTY 357

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  S+  L+ ++NDILDL  ++AG +++      L DL+ +++  +  K  E  +  
Sbjct: 358 TEAIIKSAENLIVIINDILDLTKIEAGQIQIENIEFNLADLIKQLEGVLRYKTEEKGLEF 417

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724
              +   +    + D  R+ Q+   ++ NA+ F+ KG   +    +   +D  +  F+VK
Sbjct: 418 DATTSVHVPPVLMGDPYRINQVLLNLVGNAIKFTEKGGIEVWCKLVDQQKDVNEIQFTVK 477

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  +  +  K +F  F         +  G GLGLSI    + L GG + + S+    T
Sbjct: 478 DTGVGMEPEYLKHIFTNFSQEDASITRKHGGTGLGLSISRQLVELMGGKIHVESTKGLGT 537

Query: 783 TINCRI 788
            I+  +
Sbjct: 538 VISFTL 543


>gi|296533733|ref|ZP_06896283.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
 gi|296265955|gb|EFH12030.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
          Length = 726

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 120/714 (16%), Positives = 244/714 (34%), Gaps = 40/714 (5%)

Query: 96  IGQLHQRIDIPQTDT---DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152
           +G         +       LL+F          +L+++  +     Q        ++   
Sbjct: 16  LGLPPDTALAGRPMAELFRLLAFRGLYGPGDPEELARS-AQAIDRAQPQRRSLRAEDGRW 74

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
             I         ++       + +E      +   L   +         L       D  
Sbjct: 75  FDIASNPLPGGGWVC------VATEQTAPRQQEAALMQRLRELHEALRRLPAGFGLYDAG 128

Query: 213 GDILWANISYKKNTETEGIVFQKA---------IGESRKLFKEEIKKRMISSSALEKNFC 263
             +   N +Y+          +           I   + +  ++++              
Sbjct: 129 HRLRLFNDTYETLLLLPPGTLRPGLHLAEVVALIQRHQPMGPDDLQIFADRLGFDRNRRH 188

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAI 319
           E +   + G +  +  + +    G      DV+      ++      +L      L   +
Sbjct: 189 EGMRQRQDGRSIRFASIPMP-EGGFLVTLEDVTSLRAAENEAKRRAALLDGVLAALPHGV 247

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
            ++  ++ L+  N ++  L  +  A         E+     +     E L     ++  F
Sbjct: 248 CVYGADQRLRMANAAYDRL--MPEAASRPGEHLREICRRAMAGFADDEALEAIYRRQLDF 305

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               +   HK   H  +G  +  +    P GG I +  ++T     E        +    
Sbjct: 306 ----ARPAHKRVRH--DGTAISGLTAPLPDGGHISVVSDITALHQAEEAARQRAALLQAM 359

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D + +GV +F    R+ ++N     +       ++PGT ++ +            G D 
Sbjct: 360 VDSMRQGVCLFDRQHRVVVANALAARMIGLAPEEMAPGTPLQTLRRLQYERGEFGQGADA 419

Query: 500 FAAIITSFDDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                    +    L   L    +  V+E S  P P+   +  + +VT+  RA   L   
Sbjct: 420 EGYYEEISLEPGLKLDHFLRTRPNGQVIEMSTDPTPDGGHVRVYTDVTEERRARAELERA 479

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                +A+  KN F+  +S+ELR+PL  +IGF++ L     G   ++   +   I  +  
Sbjct: 480 RAVAEEANAAKNRFLATMSHELRTPLNAVIGFSEALAADPSGPDTAE---FATAIHDAGR 536

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KL 677
            LL L+++IL++A   AG +++    + L  +L    + +        I + +      L
Sbjct: 537 HLLALIDEILEVAKAGAGTVRVETRALYLPSVLEGAARLMRQSAEAAGITLTLAPPPADL 596

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCK 736
               A+ +RL Q+   +LSNA+ F+  G  V L+A     G     V+++G  I     +
Sbjct: 597 PRARAEERRLRQVLLNLLSNAVKFTPAGGEVALEAEALPGGAVEIRVRDSGIGIEPGQLE 656

Query: 737 SVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F  FV    +H  +  G GLGL +  +     G  +++ S     T    R+
Sbjct: 657 RAFEPFVQLETSHARRYGGSGLGLYLARALAQSMGATLALESRRGEGTLARLRL 710



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 11/243 (4%)

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK----LPEQLNWKTWKENIF 379
               +   N + + +  +            EL   L          PE+L          
Sbjct: 1   AAGRVALVNAALLAMLGLPPDTALAGRPMAELFRLLAFRGLYGPGDPEELARSA------ 54

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                ++  + +    +G+   +     P GG + +    T     E      ++   E 
Sbjct: 55  QAIDRAQPQRRSLRAEDGRWFDIASNPLPGGGWVCVATEQTAPRQQEAALMQRLRELHEA 114

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +  L  G  ++    R++L N  + +L       L PG H+  + A   R+         
Sbjct: 115 LRRLPAGFGLYDAGHRLRLFNDTYETLLLLPPGTLRPGLHLAEVVALIQRHQPMGPDDLQ 174

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             A    FD  R+  +G  +      + ++ IP+P    ++T  +VT    AE     + 
Sbjct: 175 IFADRLGFDRNRRH-EGMRQRQDGRSIRFASIPMPEGGFLVTLEDVTSLRAAENEAKRRA 233

Query: 560 EAL 562
             L
Sbjct: 234 ALL 236



 Score = 40.7 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 2/130 (1%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           GR+ L N A  ++     +    G  +  +    +       G     A      D  + 
Sbjct: 3   GRVALVNAALLAMLGLPPDTALAGRPMAELFRLLAFRGLYGPGDPEELARSAQAIDRAQP 62

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK-NSF 572
            + +L        + +  PLP    +      T   + E AL ++   L +A       F
Sbjct: 63  QRRSLRAEDGRWFDIASNPLPGGGWVCVATEQTAPRQQEAALMQRLRELHEALRRLPAGF 122

Query: 573 -VQHVSYELR 581
            +    + LR
Sbjct: 123 GLYDAGHRLR 132


>gi|256829422|ref|YP_003158150.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578598|gb|ACU89734.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1131

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 152/836 (18%), Positives = 305/836 (36%), Gaps = 77/836 (9%)

Query: 2   MAGMATIGIGKGIEICTLF-SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLA--KKVNET 58
           +   A  G  +G  I  +  S  +  +  +AG     ++   L+I               
Sbjct: 172 LKCHAAQGYAQGDVIGGISVSVPLQTYLGLAGQQRLHLVIAHLVIGLLGLTGLGASHVHF 231

Query: 59  YSFLSEICDQLSKYHSLLTENNCLTIVWDGK---------DETPEIIGQLHQRIDIPQTD 109
            ++   + +   ++  L    +  T+ W+           + +  ++G   + +    + 
Sbjct: 232 RNYKRSLRESEDRFEQL--AEHSRTVTWEVDAGGLFIYVSNASASVLGYAPEELVGCMSF 289

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQ--SFDLVAETQNDCAI--------KIEGRV 159
            DL   +    F        A E   + G+  +F+  A T++   I         ++G  
Sbjct: 290 FDLHPEDGREAFKSA-----AFEVFGRRGEFTNFENRALTRDGREIWLSTNGFPLLDG-- 342

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           +G+    R    D    + A T L  ++     ++   + ++L    W RD+ G  +  +
Sbjct: 343 AGNLLGYRGNDTDITAEKEARTQLAQRE-----AMLSSMLENLPVDFWARDKDGRGIIQS 397

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK- 278
              K++          A         E+ K +     A E    E V  L  G ++ +  
Sbjct: 398 RLSKEHWGDFCSANFDAQSRHSHN-AEKWKAKHDRLYAGETIEQEEVLVLTDGRHRIFHS 456

Query: 279 ----IVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQF 330
               IV      G  GI +D+++   +  QL         I+ ++   + +++QN  L  
Sbjct: 457 MGAPIVMQGEVVGILGINLDITERRYIEAQLERERVLSKAIIDSVPGLLYLYEQNGRLVR 516

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            NR   EL       L      D   +   S  K+         +     + +   T + 
Sbjct: 517 WNRMHCELTGYSDRELGAMHLMDWYRDDPASQQKV--------ARAIERVLEEGIGTEEA 568

Query: 391 TWHLPNGQTLHVIVT--SNPRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                +G+ +   +T       G I+   +  ++T +   E       +     ++  S+
Sbjct: 569 ELQTKDGRRIPFFLTAVRLELEGRIYFTGIGIDITERKRSEEALRLSEERLALALEASSD 628

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTE----ENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           G+  +         +P +  +   +    E  ++    + +          E D  +   
Sbjct: 629 GLWDWNFQTGEVYFSPRYLGMLGYDPGDLELNITGWEKLLHPDDFEKTKRTELDHIERGE 688

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                F    K+      +    V+E+     P  + + T V++    R E  L +  EA
Sbjct: 689 PFALEFRLRNKAGDWQWVMSRGKVVEWDAAGRP-LRMVGTHVDIDQRKRMENELVKAKEA 747

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A   K+ F+ ++S+E+R+PL  I+G   LL++   G+ + +Q +       ++  L 
Sbjct: 748 AEAASLAKSEFLANMSHEIRTPLNGIMGMIQLLES---GARDEEQHRTCAMALQATGRLT 804

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
            L++DILDL+ V+AG M++      L D L +          +  +  +   D  L    
Sbjct: 805 RLLSDILDLSRVEAGKMQMRIEPFNLRDALGQSVDLFNPIAMQAGLEFRHHFDPALPEFV 864

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSIPEDM 734
           V D  R  Q+   ++ NA  F++KG  V ++A        D+   +FSV ++G  I +  
Sbjct: 865 VGDSVRFQQVLMNLIGNAFKFTTKG-FVAVEAHPLPSHESDSVRVLFSVADSGRGIEDAA 923

Query: 735 CKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             ++F  F           +G GLGL+I +  I L GG +++ S     TT +  +
Sbjct: 924 LSALFQPFSQVTRGFTRDHQGAGLGLAITKRLIALMGGTMAVESEPGCGTTFSFSL 979


>gi|162453233|ref|YP_001615600.1| hypothetical protein sce4957 [Sorangium cellulosum 'So ce 56']
 gi|161163815|emb|CAN95120.1| torS [Sorangium cellulosum 'So ce 56']
          Length = 669

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 105/497 (21%), Positives = 191/497 (38%), Gaps = 15/497 (3%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           +    ++     A+ + D++  + F N     ++      L        L E  + ++  
Sbjct: 29  STFRMLIDAAPDAMVVVDEHGRIVFVNVQTERMFGYTRGGLIGQAIEILLPERFQRSHV- 87

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWM--FENLT 420
               N  T+     +    S          +G    V ++ +P    GGT++     +++
Sbjct: 88  ---ANRSTFIAAPRARPMGSGLELFGRRR-DGSEFPVEISLSPLATEGGTLFSSAIRDIS 143

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE        +    ++      AVF    R+ L N  +R       +    G   
Sbjct: 144 DRKRLEAVAQRTSDLLRSAVESFQGAFAVFDAQDRLALCNSVYRHWLGARVSGPMIGRSY 203

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQT 538
             I          + G +  AA             GTL+L       L  +        T
Sbjct: 204 DEIVGESLAAGLFALGGEPPAAFRERMLAYHAEPDGTLDLCTSDGRSLRATERRTAEGGT 263

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T  V  E  L +       A   K+ F+  +S+ELR+PL  I+GF  LL   +
Sbjct: 264 VCTLWDMTGDVHREEELRKARGIAEAASSAKSEFLASMSHELRTPLNAILGFAQLLHRDR 323

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q + +E++      LL L++DILDL+ ++AG + ++   + + ++L EVK ++
Sbjct: 324 KTPLTDRQKERIEHVLKGGEHLLKLIDDILDLSRIEAGRVTVSIEPVNVPEVLIEVKTTL 383

Query: 659 ATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDN 716
                   I I +     +L    ADR R  QI     SNA+ +  +G    +  +  ++
Sbjct: 384 DPMAQRAGIEIALAPLPAELPKITADRTRFAQILMNYGSNAIKYGRRGGRATIAVSMPED 443

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           G     V +NG  IP++    +F  F       G   G G+GL+I +    L GG V  +
Sbjct: 444 GVVKICVIDNGIGIPQEQHAKIFQPFQRAGQETGPIEGTGIGLAITKRLAELMGGGVGFA 503

Query: 776 SSDEGVTTINCRIPSKE 792
           S     +     +P+ +
Sbjct: 504 SIPGEGSEFWIELPAHQ 520



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 92/306 (30%), Gaps = 23/306 (7%)

Query: 170 SLDGIYSELAETTLKCKKLSNHIS--VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            +  +    A         +  +    F++L D+    +   D+ G I++ N    +   
Sbjct: 4   EISSVERLSAPEQAPHGPSARQLDDSTFRMLIDAAPDAMVVVDEHGRIVFVN---VQTER 60

Query: 228 TEGIVFQKAIGESRK-LFKEEIKKRMISSSALEKNFCETVSTLEH----GNNK---SYKI 279
             G      IG++ + L  E  ++  +++ +                  G  +    + +
Sbjct: 61  MFGYTRGGLIGQAIEILLPERFQRSHVANRSTFIAAPRARPMGSGLELFGRRRDGSEFPV 120

Query: 280 VRVLNSFGEAGIAI------DVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQ 329
              L+     G  +      D+S    +      T ++L +       A A+FD    L 
Sbjct: 121 EISLSPLATEGGTLFSSAIRDISDRKRLEAVAQRTSDLLRSAVESFQGAFAVFDAQDRLA 180

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N  +       ++      S DE++    +A                   Y +     
Sbjct: 181 LCNSVYRHWLGARVSGPMIGRSYDEIVGESLAAGLFALGGEPPAAFRERMLAYHAEPDGT 240

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
                 +G++L         GGT+    ++T  V  E +      +        SE +A 
Sbjct: 241 LDLCTSDGRSLRATERRTAEGGTVCTLWDMTGDVHREEELRKARGIAEAASSAKSEFLAS 300

Query: 450 FGPDGR 455
              + R
Sbjct: 301 MSHELR 306


>gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293326569|dbj|BAJ01300.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1486

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 118/507 (23%), Positives = 205/507 (40%), Gaps = 27/507 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S+ +   D L      L    + +A+ D    + + N  F E+    +  L    ++  L
Sbjct: 427 SQVMEALDSLEEHKFALDQHAI-VAVTDLKGTITYANDKFSEISGYKVDDLIGQ-NHRIL 484

Query: 356 LEFLRSANKLPE----QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
                 +    E        K W   I +  K  E +       +   + +  T N    
Sbjct: 485 NSGFHPSEFFSEMYRTVSKGKVWHGEICNRNKRGEIYWV-----DTTIMALKDTRNLPKS 539

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I +  ++T +   E      + +   T++    G+ V   DG I  +N  F  LW   +
Sbjct: 540 YIAIRADITERKRTEIAVKEALSLMNATLESTDNGILVTSIDGEILRTNCQFSHLWGVAK 599

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L  G + R I         + +       +   ++D       T+ L+   V E +  
Sbjct: 600 ELLDKGVNDRVILKQIKVLLKKPET--FLKRVEEIYEDRELEAFDTIALIDGRVFERASS 657

Query: 532 PLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           P+         + +F ++T+    + AL +  E    A + K+ F+  +S+E+R+P+  +
Sbjct: 658 PMEVDGEYFGRVWSFRDITERTENQNALLQAKEEAELATKAKSEFLASMSHEIRTPMNGV 717

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG   LL  SK   L   Q++ V    +S+  LL+L+NDILD + +DAG ++L      L
Sbjct: 718 IGMLGLLSNSK---LTEYQNRRVSIAQSSAQSLLSLINDILDYSKIDAGKLELEQIDFNL 774

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
             +L +  + IA +     + + +   G   S V  D  RL Q  + +  NA+ F+ +G 
Sbjct: 775 RGMLGDFAEGIAHQAQNKKLELILDLKGVEQSMVTGDPGRLRQAITNLTGNAIKFTKQGE 834

Query: 707 TVI---LKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
            V+   LK A +   ++  SV + G  IP D    +F  F        R   G GLGL+I
Sbjct: 835 VVVRAELKPAHEGKWWLICSVSDTGIGIPADKIDGLFKSFSQVDASTTRKYGGTGLGLAI 894

Query: 761 VESFINLHGGHVSISSSDEGVTTINCR 787
           V+    L GG VS+SS     +    +
Sbjct: 895 VKKISRLMGGDVSVSSVYGIGSCFEIK 921


>gi|299148396|ref|ZP_07041458.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513157|gb|EFI37044.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 936

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 122/660 (18%), Positives = 259/660 (39%), Gaps = 61/660 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +   E      K+    +    LF  +      +   RD+       N   
Sbjct: 289 WFSSLGNIINICIELRKTKDKVIREQTFLNNLFHFMPMGYIRMSIIRDEN------NKPC 342

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +          + NF E +                
Sbjct: 343 DYRVTDANEVSSTFFGLPLESYIGSLASEKHPDYLQKLNFLEEILDSNSYREKDEYFPRT 402

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 403 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYL 462

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E     
Sbjct: 463 IDLNNKDLEIFGVVNKSDVIGVNFFDNPNVPQNIRDRVRNEDLVDFRLNYS--FEQAEGY 520

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y+++ ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 521 YETNRSNAIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 577

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           +   G A      ++ L N    ++ +  +N       + +         +  D      
Sbjct: 578 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDTLLDEVVGVYTQMHPEDRKRFLD 631

Query: 502 AIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVTDSV 549
                 D +R+  QG + +           +S +V+  +  P  N   ++    ++T+  
Sbjct: 632 FYDEVRDGKRRHFQGEMRIRRPGTKNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELK 691

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++   L+ +Q +Y
Sbjct: 692 ETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETE--ELSERQ-EY 748

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  E  + +
Sbjct: 749 IKIVRENNDLLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKE-EVEL 807

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + +   +   ++DR R+ Q+ S  ++NAM F+S+GS + +     +G+  F V++ G  
Sbjct: 808 VLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIG 866

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ++    +F RFV         G GLGLSI +S +   GG + + S     +     IP
Sbjct: 867 IEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924


>gi|49475278|ref|YP_033319.1| two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
 gi|49238084|emb|CAF27291.1| Two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
          Length = 773

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 109/497 (21%), Positives = 209/497 (42%), Gaps = 42/497 (8%)

Query: 329 QFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            + +R+  E+   I    L +      ++         P   N+    + + S  K    
Sbjct: 285 VYWSRAMYEMLGYIPQDALLSISQITAIIN--------PNDANFFDLAQELMSGKKKHID 336

Query: 388 HKDTWHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                   +G  + + + +          + +  +++ Q  L  +         + I+++
Sbjct: 337 INVPMRHADGHYVWMRIRAEVTDEEELHLVGIAFDISEQRQLAEETAQADLRIRDAIENI 396

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           SE   ++  +GR+ +SN  F       +  L PG     + A      NE    D     
Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQVLQPGIQRATVEAMARPAINEYPLKDDGTGN 456

Query: 504 ITSFD----------DERKSLQGTLELLSDSVLE---------------YSIIPLPNAQT 538
           +TS            +ER++  G L  +   + E               +S I       
Sbjct: 457 LTSIRQTADGCWLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQELKRAR 516

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                  T+  +  ++L  + E    A++ K+ F+ ++S+ELR+PL  I+GF+D++  S 
Sbjct: 517 GNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGFSDIMLQST 576

Query: 599 LGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            G L S++  +Y+  I  S   LL L+NDILD++ ++AG   L+   I L  +++E  ++
Sbjct: 577 FGPLGSQRYQEYMHDIYNSGNHLLTLINDILDMSKIEAGRFTLDRKNIDLEPIISEAVRT 636

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +  E NI +      +L + V D + + QIF  ++SNA+ F+  G ++ + A +   
Sbjct: 637 LTPQAQEKNISVSTNIAPELHAEV-DGRAMKQIFLNLISNAVKFTPSGGSINVCAFKKKN 695

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
           + +  +K+ G  IP+   K +   F    +       G GLGL+I  S + LH G + I 
Sbjct: 696 NLVCRIKDTGVGIPQSAIKKLGQPFEQVENQLTKTHTGSGLGLAISRSLLELHKGKLEII 755

Query: 776 SSDEGVTTINCRIPSKE 792
           S +   TT+   +P K+
Sbjct: 756 SKEMKGTTVTITMPIKQ 772



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 75/248 (30%), Gaps = 31/248 (12%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKA---IGESRKLFKEEIKKRMISSSALEKNFCETVS 267
            +G + W+   Y    E  G + Q A   I +   +           +  L     + + 
Sbjct: 281 ASGRVYWSRAMY----EMLGYIPQDALLSISQITAIINPNDANFFDLAQELMSGKKKHID 336

Query: 268 TLE-----HGNNKSYKI---VRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNL 315
                    G+    +I   V         GIA D+S++  + ++         + + N+
Sbjct: 337 INVPMRHADGHYVWMRIRAEVTDEEELHLVGIAFDISEQRQLAEETAQADLRIRDAIENI 396

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           + +  ++D    L   N  F E   I    L        +    R A      +N    K
Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQVLQPGIQRATVEAMARPA------INEYPLK 450

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
           ++      S           +G  L +       GG + +  +++     + K+    + 
Sbjct: 451 DDGTGNLTS------IRQTADGCWLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERR 504

Query: 436 QGETIDHL 443
               I  L
Sbjct: 505 LFSFIQEL 512


>gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1624

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 143/797 (17%), Positives = 287/797 (36%), Gaps = 81/797 (10%)

Query: 44   LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI 103
            ++R R  +A  +       + +    S    ++T+     I W       +        +
Sbjct: 337  MMRHRARMALAMERFRVLGAALQS--SPVAVVITDAEGR-IDWVNS----QYEANTGYSL 389

Query: 104  DIPQTDTDLLSFENWLKFHHYIKL-SKATEKLRKEG----QSFDLVA---ETQNDCAIKI 155
            D  +     L          Y ++ S+    L   G    Q  D      E         
Sbjct: 390  DEVRGRKPSLVASGQTPPETYRQMWSRLIAGLPWRGEFINQRQDGTIYHDEATLSPVFDD 449

Query: 156  EGRVSGSCAFLRILSLDGIY-SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
             GR     A + +        +   E   + ++L++ ++    +FD+    V        
Sbjct: 450  RGRRI---AIVGLHENVTERITAHQELQRRERELNDALAQQTAIFDNAP-PVLIVADDRL 505

Query: 215  ILWANISYKKNTETEGIVFQKAIGE---SRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            + + N +  +    +    +    E     +        R+       ++  E V+ L  
Sbjct: 506  LRF-NPACLELLGVQPGQLEGRRVETIFGGEELHRRFMARIEGRLEAGESVRE-VARLVR 563

Query: 272  GNNKSYKIV---RVLNSFGEAGIAI----DVSKEITVNDQLTHTYE--ILHNLTVAIAIF 322
             +   ++     R+L   G A   I    DV++       +    E  IL      + +F
Sbjct: 564  RDGTVFEARLSGRLLPLQGYAHACIWVVEDVTEARRAEAAMREMNERLILAQEAGRVGVF 623

Query: 323  DQN--RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
            D +  R     +     L+ +        P    L++++ S +   E       + +   
Sbjct: 624  DLDLARDHLVFSEKLGSLYGLPH-----RPQGLRLVDWMDSLHM--EDRPRVQARLDAAL 676

Query: 381  VYKSSETHKDTWH--LPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNT 431
              +++    D+W    P+G    ++ ++             I +  ++  Q  LE +   
Sbjct: 677  AGRATGLQ-DSWRVVRPDGSERWLLCSARIERDAEGRARRLIGVQVDVHEQKQLEARLAD 735

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRY 490
             +  Q   +D +   +     DGR +  N A+   +    E+ L    H         R 
Sbjct: 736  QLAFQQALVDAIPIPLFHKDGDGRYRGFNRAYEEAFGIRREDFLGKTVHEAGFLNQAERA 795

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQ--------TMLT 541
              E+D   + A            +   ++L  +D  + +++  +   Q        ++ T
Sbjct: 796  EFEADARTIRAG--------GPPIHKEVDLTYADGEIHHTLFWMHGFQRPDGSPGGSIGT 847

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             V++TD  RAER L    E   +   +K++F+ ++S+E+R+P+  IIG + L   S    
Sbjct: 848  LVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKS---G 904

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L  +Q+ YV  I  +   LL ++NDILD + ++AG + +     +L+ +L  +   +  K
Sbjct: 905  LTPRQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVGYK 964

Query: 662  MHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD- 718
                 + + +  +       V D  RL QI     +NA+ F+ +G   V ++    +G  
Sbjct: 965  AGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVRVVERHGRR 1024

Query: 719  --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                F V++ G  +  +    +F  F        RR  G GLGL+I ++   L GG V  
Sbjct: 1025 VLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEVGA 1084

Query: 775  SSSDEGVTTINCRIPSK 791
             S+    +T    +P +
Sbjct: 1085 ESAVGEGSTFWVMLPLE 1101


>gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1002

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 148/796 (18%), Positives = 288/796 (36%), Gaps = 103/796 (12%)

Query: 65  ICDQLSKYHSLLTEN-NCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW-LKFH 122
           +  QL + + LL E      ++W        I         +  T  + L+F  W +   
Sbjct: 1   MSSQLDECNRLLWEKCPVGLVLWRKNGAL--IDANSTYAAILGSTVPETLNFNYWQITPE 58

Query: 123 HYIKLSKAT-EKLRKEG--QSFDLVAETQNDCAIKIEGRVS----GSCAFLR--ILSLDG 173
           +Y+   +   E+L + G  Q+++     Q+   + ++             +   +  +  
Sbjct: 59  NYLASERTILEQLEQTGCHQAYEKEYLHQDGHLVPVKVSTVIIEKDGEKLMWSSVEDISN 118

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL----WANISYKKNTETE 229
           I     E     K L    + ++ L  +   ++W     G       W   + +   E E
Sbjct: 119 IRQAQKERQQSEKILKQSEARYRSLVTTNTQIIWVSSPEGICFELKDWIAYTGQTLAEAE 178

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFG 287
              +  A+    + +  E     +++ +  +         + GN + + +    V+   G
Sbjct: 179 NGGWIDAVHPDDRGYTGEAWGIAVANRSQYQIEYRIRG--KDGNYRYFWVWGAPVIEEDG 236

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
           +     G   D+        +     E   +L  A      +  + +      E W I  
Sbjct: 237 DVREWIGTCTDIHDRKLAEAENQRLKERYRSLVTA------SSQIVWGTTP--EGWGISS 288

Query: 344 AFLA----TNPSNDEL--LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
             L     T  S  E+    +L   +      +++ W  ++  V +S    +      +G
Sbjct: 289 EMLTWIAYTGQSEAEVEGWGWLDPIHPDDRTRSFEAWNASV--VKRSIYQTEYRLRGKDG 346

Query: 398 QTLHVIVTSNP----RGGT---IWMFENLTVQV-----------DLETKY--------NT 431
              +  V   P     G     I    ++  +             LE +         NT
Sbjct: 347 TYRYFSVCGVPVLKQDGSIQEWIGTCTDIHDRKLAEMALRQLNHQLEARVAERTAALQNT 406

Query: 432 LVKVQG--ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           L + QG    +D+L++G+ V    G+I   NPAF ++       L+              
Sbjct: 407 LAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTATTLNG------------- 453

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           +Y E   + L   I  +     +     + L  D + +     +              S 
Sbjct: 454 HYQELPIFGLADLIERTRSHPGEVFAADVALAKDRIGQAVGTAIFKRTDTKEAAACFGSA 513

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSK 605
              R +T + E     D++K  F+  VS+ELR+PLT+++GF  +    L+T     L+++
Sbjct: 514 LLIRDVTAEKEI----DKMKTDFISTVSHELRTPLTSVLGFASIIQEKLQTDVFPVLSTE 569

Query: 606 QSQY----------VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +           +  I + +  L +L+ND+LD+A ++AG ++     I   +LL+   
Sbjct: 570 DRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPINPGELLDWAA 629

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S A     N +++    +  L   + DR RLLQ+   ++SNA+ F+  GS V  +  +D
Sbjct: 630 NSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFTEFGS-VTCRVKQD 688

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                 SV + G  I  +    VF +F         + +G GLGL I +  +  HGG + 
Sbjct: 689 KDGVCISVIDTGVGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIW 748

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +  + +IP
Sbjct: 749 VESEPGHGSVFSFQIP 764



 Score = 42.6 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 92/309 (29%), Gaps = 57/309 (18%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           I  R     +                +Y SL+T ++   IVW     TPE  G   + + 
Sbjct: 248 IHDRKLAEAENQRLK----------ERYRSLVTASSQ--IVW---GTTPEGWGISSEMLT 292

Query: 105 ----IPQTDTDLLSFENWLKFHHYIKLSKATE----------------KLRKEGQSFD-- 142
                 Q++ ++  +  WL   H    +++ E                +LR +  ++   
Sbjct: 293 WIAYTGQSEAEVEGWG-WLDPIHPDDRTRSFEAWNASVVKRSIYQTEYRLRGKDGTYRYF 351

Query: 143 ----LVAETQNDCAIKIEG-------RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
               +    Q+    +  G       R     A LR L+   + + +AE T   +     
Sbjct: 352 SVCGVPVLKQDGSIQEWIGTCTDIHDRKLAEMA-LRQLNHQ-LEARVAERTAALQNTLAE 409

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN----TETEGIVFQKAIGESRKLFKEE 247
                 + D+L   +   D  G I   N ++         T    +Q+          E 
Sbjct: 410 AQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTATTLNGHYQELPIFGLADLIER 469

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
            +       A +    +       G    K          FG A +  DV+ E  ++   
Sbjct: 470 TRSHPGEVFAADVALAKDRIGQAVGTAIFKRTDTKEAAACFGSALLIRDVTAEKEIDKMK 529

Query: 306 THTYEILHN 314
           T     + +
Sbjct: 530 TDFISTVSH 538


>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1786

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 127/718 (17%), Positives = 261/718 (36%), Gaps = 69/718 (9%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL--SLDGIYS 176
            L   H ++      + R        +   ++  A+K +G    +   L IL  + DG   
Sbjct: 568  LGERHVLERQTFLREGRDRS-----MVNARHVRALKADGNEFIAEIALSILPTAFDGQRQ 622

Query: 177  ELAETTLKCKKL------SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
              A      +KL       +    F+ L  ++   V +R + GD+ +         E  G
Sbjct: 623  VAASIRDMTQKLAVEQKIRDSEQRFRGLVTNIPGAV-YRTRIGDVWFMEYISDNIAEITG 681

Query: 231  IVFQKAIGESRKLFKEEIKKRMISS---------SALEKNFCETVSTLEHGNNKSYK--- 278
                + I   ++ F   I +    +         +  E    E       G+ +      
Sbjct: 682  YAASQFIENRQRTFASLILEEDRPTCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKG 741

Query: 279  ---IVRVLNSFGEAGIAIDVSKE----ITVNDQLTHTYEILHNLTVAIAIFD----QNRY 327
                          G   D+++     + +         I  ++   +         +R 
Sbjct: 742  KASYTEEGIPLWFDGSIDDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRR 801

Query: 328  LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
              F + + +++  +    L +N   D + E +    +           E+     +    
Sbjct: 802  FTFLSGAAMKMLGLHRDDLMSN--FDIIAERIFDEERPDVVRALSGQSEDRLQWIR---- 855

Query: 388  HKDTWHLPNGQTLHVIVTSNP----RGGTIW--MFENLTVQVDLETKYNTLVKVQGETID 441
             +  +  PNG    +   ++      GG  W     ++T +  +E +            D
Sbjct: 856  -EFRYRHPNGSIRWMEAGASGHLGEEGGITWNGYVMDITQRKTIEQELALSEAHFKALFD 914

Query: 442  HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
              + G+      G I   N  F +      N L     I  + +   +   ++   +L  
Sbjct: 915  GATIGIVNVDIKGVILDCNDQFCADMALSRNHLRNTA-IFEVLSEQDQPIAKAQFQELVE 973

Query: 502  AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALT 556
              I  +  ER  ++ +   L    +  ++  L +AQ      +++ V++T+       L 
Sbjct: 974  GKIDHYRGERSFIRPSGAPL---WMTVNVSALLDAQGQFESAVISMVDMTELKLLSDELL 1030

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               E    A + K  F+ ++S+E+R+P+  IIG + L   ++   L+ KQ  YVE I  +
Sbjct: 1031 LAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTE---LDKKQKNYVEKIERA 1087

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            S  LL+++NDILD + ++AG + ++     L+ +L ++    + K     I +       
Sbjct: 1088 SQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPN 1147

Query: 677  LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731
            +    + D  RL Q+   +++NA+ F+ +G  +    +++   D+    FSV+++G  + 
Sbjct: 1148 VPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLT 1207

Query: 732  EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            E     +F  F        R   G GLGL+I +  + L GG + + S     +T    
Sbjct: 1208 EQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFT 1265



 Score = 41.1 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 127/419 (30%), Gaps = 63/419 (15%)

Query: 164 AFLRILSLDGIYSELAET--TLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWAN 219
           A   I++L   ++++AE     +   L +  + F  L D +    ++   D  G +    
Sbjct: 363 AVSEIVTLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQL---- 418

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
                          K +G S  L K + ++   ++   EKN+  T   L  G N     
Sbjct: 419 -------AQVSEGVTKVLGISPDLLKRKYQRLFSANPLNEKNWQYTDLAL-KGQNVPSHQ 470

Query: 280 VRVLNSFGE--------AGIAIDVSKEITVNDQLTHTYE----------ILHNLTVAIAI 321
           V +L+  G           +  D ++ ++V    T   E          +L     A+ I
Sbjct: 471 VEMLDDQGHLRRLDVFMQPLMSDTNELMSVEMLFTDVTEQFSAAVWSNAVLEAAPEAMLI 530

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
            D+   + F N   ++L+  +   +        L + L   + L  Q   +  ++     
Sbjct: 531 VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMVN 590

Query: 382 YKSSETHKDTWHLPNGQTL--HVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVK 434
            +     K      +G      + ++  P     +        ++T ++ +E K     +
Sbjct: 591 ARHVRALK-----ADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQ 645

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                + ++   V               +R+             +I  I    +  + E 
Sbjct: 646 RFRGLVTNIPGAV---------------YRTRIGDVWFMEYISDNIAEITGYAASQFIE- 689

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNAQTMLTFVNVTDSVRAE 552
           +    FA++I   D     L     L      E    I   +            S   E
Sbjct: 690 NRQRTFASLILEEDRPTCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEE 748


>gi|298480341|ref|ZP_06998539.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298273622|gb|EFI15185.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 936

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 124/663 (18%), Positives = 262/663 (39%), Gaps = 67/663 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +   E      K+    +    LF  +      +   RD+       N   
Sbjct: 289 WFSSLGNIINICIELRKTKDKVIREQTFLNNLFHFMPMGYIRMSIIRDEN------NKPC 342

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +          + NF E +                
Sbjct: 343 DYRVTDANEVSSTFFGLPLESYIGSLASEKHPDYLQKLNFLEEILDSNSYREKDEYFPRT 402

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 403 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYL 462

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E     
Sbjct: 463 IDLNNKDLEIFGVVNKSDVIGVNFFDNPNVPQNIRDRVRNEDLVDFRLNYS--FEQAGGY 520

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y++S ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 521 YETSRSNVIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 577

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCSRYYNESDGW--D 498
           +   G A      ++ L N    ++ +  +N        +  + A  S+ + E      D
Sbjct: 578 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLD 631

Query: 499 LFAAIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVT 546
            +  +    D +R+  QG + +           +S +V+  +  P  N   ++    ++T
Sbjct: 632 FYDGVR---DGKRRHFQGEMRIRRPGTKNEWNWVSSNVMVTNYKPEENEIEIIGINYDIT 688

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++     +++
Sbjct: 689 ELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL---AER 745

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  E  
Sbjct: 746 QEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKE-E 804

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +       +   ++DR R+ Q+ S  ++NAM F+S+GS + +     +G+  F V++ 
Sbjct: 805 VELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDT 863

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +F RFV         G GLGLSI +S +   GG + + S     +    
Sbjct: 864 GIGIEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWF 921

Query: 787 RIP 789
            IP
Sbjct: 922 TIP 924


>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 1233

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/494 (21%), Positives = 201/494 (40%), Gaps = 21/494 (4%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              ++ ++  AI   DQ       N+S   +     + +    ++ EL    + A    E
Sbjct: 460 LRSLIDSIPEAIVFKDQEGKYLGCNKSAEHMLGYSESEM-IGMTSVELTSPEQGARIRLE 518

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             + +  K+     Y+          L +   L          G I ++ ++T +     
Sbjct: 519 --DSQVLKDRAALRYQEKVDISGKSVLLDILKLPFYNRRGELLGLISVWRDVTREYQSAE 576

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL-SPGTHIRNIAAT 486
           +     +     +D + +G+  +  D    + NP++ S+   E N   +  + I  +   
Sbjct: 577 QLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPSYYSMLGYETNEFPALISSIEELIHP 636

Query: 487 CSR----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
             R     Y +    +   A  T F    KS +    L    V+E++   +P ++ + T 
Sbjct: 637 DDRDRVKTYRDLYLSEPSGAYETEFRMRTKSGRYLWVLSRGRVVEFTADGMP-SRMLGTH 695

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T     E AL E       A+  K+ F+ ++S+E+R+P+  IIG   L   ++   L
Sbjct: 696 KDITRQKSNEVALLEAKHDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLASRTQ---L 752

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q  Y+     S+  LL ++NDILD + ++AG ++L      L  +L+ V    A   
Sbjct: 753 TLQQQDYLNKAGFSAESLLRIINDILDFSKIEAGKLELESVPFSLEKVLDHVIDMNALSA 812

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            E  + + + S    G +   D  RL Q+   +LSNA+ F+  G  + L           
Sbjct: 813 QEKGVELLLFSPLTTGLTLKGDPLRLGQVLVNLLSNAVKFTQDGE-IELGCEDVGERDTQ 871

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
               F V++ G  I  +   ++F+ F        R   G GLGLSI +  +++ GG++S+
Sbjct: 872 ISLKFWVRDTGIGISREQQANLFDAFSQADGSTTRQYGGTGLGLSISKHLVSMMGGNLSV 931

Query: 775 SSSDEGVTTINCRI 788
            S  +  +T +  +
Sbjct: 932 ESEPQQGSTFSFTL 945



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 97/303 (32%), Gaps = 25/303 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+ +L    ++        ++     ++ + L DS+   +  +DQ G  L  N S +   
Sbjct: 434 RLDNLVAKRTQ--RLRETTERREREYALLRSLIDSIPEAIVFKDQEGKYLGCNKSAEHML 491

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSS--ALEKNFCETVSTLEHGNNKSYKIVRVL- 283
                             ++  + R+  S                  G +    I+++  
Sbjct: 492 GYSESEMIGMTSVELTSPEQGARIRLEDSQVLKDRAALRYQEKVDISGKSVLLDILKLPF 551

Query: 284 -----NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFHNRS 334
                   G   +  DV++E    +QL  + E  H    A+   ++D   +      N S
Sbjct: 552 YNRRGELLGLISVWRDVTREYQSAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPS 611

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETH--KDT 391
           +  +   +        S+ E L      +++    + + +     +       T   +  
Sbjct: 612 YYSMLGYETNEFPALISSIEELIHPDDRDRVKTYRDLYLSEPSGAYETEFRMRTKSGRYL 671

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD-----LETKYNTLVKVQ--GETIDHLS 444
           W L  G+ +       P    +   +++T Q       LE K++  +      E + ++S
Sbjct: 672 WVLSRGRVVEFTADGMPS-RMLGTHKDITRQKSNEVALLEAKHDAELANMYKSEFLANMS 730

Query: 445 EGV 447
             +
Sbjct: 731 HEI 733


>gi|293373605|ref|ZP_06619953.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294809416|ref|ZP_06768121.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292631430|gb|EFF50060.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294443352|gb|EFG12114.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 936

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 124/663 (18%), Positives = 262/663 (39%), Gaps = 67/663 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +   E      K+    +    LF  +      +   RD+       N   
Sbjct: 289 WFSSLGNIINICIELRKTKDKVIREQTFLNNLFHFMPMGYIRMSIIRDEN------NKPC 342

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +          + NF E +                
Sbjct: 343 DYRVTDANEVSSTFFGLPLESYIGSLASEKHPDYLQKLNFLEEILDSNSYREKDEYFPRT 402

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 403 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYL 462

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E     
Sbjct: 463 IDLNNKDLEIFGVVNKSDVIGVNFFDNPNVPQNIRDRVRNEDLVDFRLNYS--FEQAGGY 520

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y++S ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 521 YETSRSNVIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 577

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCSRYYNESDGW--D 498
           +   G A      ++ L N    ++ +  +N        +  + A  S+ + E      D
Sbjct: 578 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLD 631

Query: 499 LFAAIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVT 546
            +  +    D +R+  QG + +           +S +V+  +  P  N   ++    ++T
Sbjct: 632 FYDGVR---DGKRRHFQGEMRIRRPGTKNEWNWVSSNVMVTNYKPEENEIEIIGINYDIT 688

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++     +++
Sbjct: 689 ELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL---AER 745

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  E  
Sbjct: 746 QEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKE-E 804

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +       +   ++DR R+ Q+ S  ++NAM F+S+GS + +     +G+  F V++ 
Sbjct: 805 VELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDT 863

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +F RFV         G GLGLSI +S +   GG + + S     +    
Sbjct: 864 GIGIEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWF 921

Query: 787 RIP 789
            IP
Sbjct: 922 TIP 924


>gi|153870360|ref|ZP_01999777.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152073175|gb|EDN70224.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 1105

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 134/691 (19%), Positives = 279/691 (40%), Gaps = 74/691 (10%)

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
           LRK+G  F       N   ++  G+     A +R         ++ E       L     
Sbjct: 193 LRKDGTFF---YTEINGTTLEYNGQKH-LLAIIR---------DVTERKRAENALKESEE 239

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
            F+ L +     ++  D  G  +  N S     ++ G    + +  S    ++ +    +
Sbjct: 240 RFRSLVEQAADAIFVHDLEGRFVDVNQS---ACKSVGYSRSELLNLSVTNLEKGVSLEQL 296

Query: 254 SSSALEKNFCETVSTLEHGNNKS-----------YKIVRVLNSFGEAGIAIDVSKEITVN 302
            +        E+V+    G ++              +++   +      A D+++   V 
Sbjct: 297 KTVWQHIKVGESVTL--EGTHRHKTGKKIPVEVRLGLIKWDGTQYILAAARDITERKRVE 354

Query: 303 DQLTH------TYEILHNL-TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + L          + + NL +  I +    +     +     +  ID      +PS++  
Sbjct: 355 EILKKRAIEFKMAQEIANLGSYTINLLTSEQE---WSDQIFHILGIDRK--EVSPSHENF 409

Query: 356 LEFLRSANK-LPEQLNWKTW--KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           ++F+   +K L E+ +   +  ++ + + Y+      +   L  G  +       P    
Sbjct: 410 MQFVPPEDKELLERESQAAFTGQKTLDAYYRIIRKDGEVRFLHTGGIVEYNDKKIP-VRM 468

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
               +++T +   E K    + +Q + +++++EGV +    G + L+N     ++  +EN
Sbjct: 469 YGFTQDITERKRAEEK----LLIQAKILENMAEGVNLTTESGLMLLTNRLLTRMFGYDEN 524

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT------SFDDERKSLQGTLELLSDSVL 526
            L  G H+  I  + S   N      + A + T       F++++K     +     S L
Sbjct: 525 EL-IGQHVS-ILNSLSPEENMVFVNHVIADLQTKEIWEGEFNNQKKDGTHFISYAYISAL 582

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           + S         +    ++T+  +AE AL +  E    A+  K+ F+  +S+E+R+P+  
Sbjct: 583 DIS----GQHYFVTVQEDITERKQAEIALQQAKEQAESANRAKSEFLATMSHEIRTPMNA 638

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++GF++LL        N +Q  Y++ I  +   LL L++DILDLA ++AG + + Y  + 
Sbjct: 639 VLGFSELLSELV---TNKQQKSYLDSIKMAGKTLLTLIDDILDLAKIEAGRLDIQYEAVN 695

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
             ++  E+KQ    K+ +  +   V  D  L  + + D  RL Q+   ++ NA+ F+ KG
Sbjct: 696 PYNIFEELKQIFVLKIVDKQLDFIVDIDENLPLALILDETRLRQVLLNLIGNAVKFTEKG 755

Query: 706 STVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
             + L A + +       D + SV++ G  IP    + +F  F         +  G GLG
Sbjct: 756 -YIKLGAQKIDKMDKSKIDLLISVEDTGIGIPLAQQEMIFEAFRQQDGQSNRKYGGTGLG 814

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I    + +  G +S++ +    +  N  +
Sbjct: 815 LAITRRLVEMMNGDISVTGTVGKGSIFNISL 845



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 74/241 (30%), Gaps = 19/241 (7%)

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIF-SVYKSSETHKDTWHL--PNGQTLH----- 401
           P  D L       +  PE    +TW            + H+  + +   + + +      
Sbjct: 26  PCEDWLEPTFWVEHLHPED---RTWAPGFCMEATFKKQDHEFEYRMITADNRIIWLRDLV 82

Query: 402 -VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            VI+ ++       +  ++T     E       +      +  ++   +   +G+I   N
Sbjct: 83  SVIIENDQPVKICGVMLDITQWKQAEQTLKENEQNLQAIFNSTTDAFIIADLEGKIVDIN 142

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLE 519
            +   ++   +         + I         E         I ++   D RK       
Sbjct: 143 QSAIQMYGYSKAEFVTLHANQVICPEYQSRLKEFIQTAQSGKIASAQSVDLRKDGTFFYT 202

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            ++ + LEY+         +    +VT+  RAE AL E  E  R   E          ++
Sbjct: 203 EINGTTLEYN----GQKHLLAIIRDVTERKRAENALKESEERFRSLVEQAAD--AIFVHD 256

Query: 580 L 580
           L
Sbjct: 257 L 257


>gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1076

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 111/517 (21%), Positives = 207/517 (40%), Gaps = 60/517 (11%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL ++T A    +    + + N    EL+      L     +    +       L  Q N
Sbjct: 291 ILSSITDAFITLNPEWQVVYINEKAAELFG---QGLQDGI-HQNFWQTYPQELGLDHQEN 346

Query: 371 WKT-WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + T  ++ I   ++    +   W       L V +  +  G ++++ +++T +   E   
Sbjct: 347 YHTALQDQISQSFEVFYANSQIW-------LEVRIFPSVDGLSLFL-QDITPRKLAEAHL 398

Query: 430 -------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                   T  ++    ID + + +     +G     N  F +     +     G    +
Sbjct: 399 VQMNEDLKTSQQLLRRVIDTIPQLLFWKDREGIYLDCNLQFATYVGLSQPEQVVGKTDAD 458

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----Q 537
           +                   I+T+ + E   L+       D+ LE   +PL  A      
Sbjct: 459 LPWAPPELAAFQASEQ---RILTTGEIETALLK---RHNPDTWLETIKVPLHQADGTIMG 512

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGF 590
            +  + +VT   +A+  L   N  L+ A        ++K+ F+ ++S+ELR+P+  +IG 
Sbjct: 513 ILGVYQDVTARQQADAKLRNVNAELQTAKDRADAASQVKSEFLANMSHELRTPMNAVIGM 572

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T LL  +   SL+++Q  +V+ I +S   LL L+NDILD + ++AG +++      L   
Sbjct: 573 TGLLTHT---SLDAQQQDFVDTIRSSGDALLCLINDILDFSKIEAGKLEVEEQPFNLKSC 629

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + E  + +A +  +  + I  ++D  L    V D  RL Q+   +L+N + F+  G  ++
Sbjct: 630 IEEALKLVAPRAFKKGLEIAYLADPDLPCGIVGDVTRLRQVLVNLLTNGVKFTDNGEVIV 689

Query: 710 ----LKAARDNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
               + A   + +            F F+VK+ G  IPED    +F  F        R  
Sbjct: 690 YVKEVTAEIQDREGSGSEGQSPRRLFQFAVKDTGIGIPEDRLNRLFQSFSQVDSSTTRKY 749

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+I +    L GG + + S     +T    I
Sbjct: 750 GGTGLGLAISKRLCELMGGKIWVDSEIGIGSTFTFTI 786



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 13/186 (6%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           QSF++         +++    S     L +  +       A      + L     + + +
Sbjct: 357 QSFEVFYANSQIW-LEVRIFPSVDGLSLFLQDITPRKLAEAHLVQMNEDLKTSQQLLRRV 415

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF----KEEIKKRMIS 254
            D++  L++ +D+ G  L  N+ +           ++ +G++         E    +   
Sbjct: 416 IDTIPQLLFWKDREGIYLDCNLQFATYVGLS--QPEQVVGKTDADLPWAPPELAAFQASE 473

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHT 308
              L     ET     H  +   + ++V          G  G+  DV+     + +L + 
Sbjct: 474 QRILTTGEIETALLKRHNPDTWLETIKVPLHQADGTIMGILGVYQDVTARQQADAKLRNV 533

Query: 309 YEILHN 314
              L  
Sbjct: 534 NAELQT 539


>gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1120

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 211/512 (41%), Gaps = 35/512 (6%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                 + +       +L      I  +D ++   + N   +E+  +  +   +  + + 
Sbjct: 148 TQASQKLKESEERYRLVLEGANDGIWDWDLSKNEVYWNDRLLEIVGLSRSEFGS--AIEA 205

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ------TLHVIVTSNP 408
             + L      PE  ++++ ++ + +  ++   +   + L +        T       N 
Sbjct: 206 FFDRLH-----PE--DYESTRKALEAHLETGTEYNVEFRLLHSSDVYRYCTGRGKAQRNQ 258

Query: 409 RGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +G  +    +  +++ +   E       +   + I  +   +A+F  + R +  +  + +
Sbjct: 259 QGKALRMAGIISDISDRKLAEAALERERQQLRQIIACVPVPMAMFDKEMRYQAHSQRWLT 318

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            +  E   +   ++   +     R+  +     L   +++  +D  K   G+   L  ++
Sbjct: 319 QYNLEGQSILNRSYYEVLPDIPDRW-RKMHERSLTGEVVSVSEDAWKREDGSTVFLRWAI 377

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             +          +L    + + V A  A         +A  +K+ F+ ++S+E+R+P+ 
Sbjct: 378 HPWYAPDGEVGGIVLVSDRINELVEAREA-------AIEASRVKSQFLANMSHEIRTPMN 430

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G   LL      SL +K  +Y + I  S+  LL+++NDILD + ++AG M+L     
Sbjct: 431 GVLGMAQLLLRL---SLEAKPREYAQTIYRSAEHLLSVINDILDFSKIEAGEMRLETLDF 487

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L+  +  + + +     E  + + V+ +  +      D  RL QI   +++NA+ F+ +
Sbjct: 488 DLDVCIESMVEMVVATAEEKGLELNVLIESSVPRQLQGDPGRLKQILLNLVNNAIKFTDR 547

Query: 705 GST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           G     V LK++  +   IFSV+++G  I  +  K +F  F  V  +   Q  G GLGL 
Sbjct: 548 GQVLVRVSLKSSTVDRKLIFSVRDSGIGISPEGQKKLFQSFSQVDGSPTRQYGGTGLGLV 607

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I +  + + GG + + +S    +     IP +
Sbjct: 608 ICKQLVEMMGGEIGVRTSVGKGSNFWFTIPLQ 639



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 140/438 (31%), Gaps = 65/438 (14%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
           R     A K+      ++E          LL  +N             E+     +    
Sbjct: 17  RMAVRRALKIAGVRVEIAEAGGSAEARVLLLAAHN-------------ELTNSAEEMASA 63

Query: 106 PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF-DLVAETQNDCAIKIEGRVSGS-- 162
              D   L +   L     +KL    + +R+ G     +V   Q D  I +E   +G+  
Sbjct: 64  KPFDCAFLDY--RLPDGDGLKL---VKTIREAGIKIPLIVLTGQGDEQIAVELMKAGASD 118

Query: 163 ---CAFLRILSLDGIYSELAE-------TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
               A L   +L                 T   +KL      ++++ +  +  +W  D +
Sbjct: 119 YIAKAKLSPENLSRSLQNAIRIYRAETKATQASQKLKESEERYRLVLEGANDGIWDWDLS 178

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
            + ++ N    +        F  AI         E  +    +         T   +E  
Sbjct: 179 KNEVYWNDRLLEIVGLSRSEFGSAIEAFFDRLHPEDYESTRKALEAHLE-TGTEYNVEFR 237

Query: 273 NNKSYKIVRVLNSFG------------EAGIAIDVS----KEITVNDQLTHTYEILHNLT 316
              S  + R     G             AGI  D+S     E  +  +     +I+  + 
Sbjct: 238 LLHSSDVYRYCTGRGKAQRNQQGKALRMAGIISDISDRKLAEAALERERQQLRQIIACVP 297

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           V +A+FD+    Q H++ ++  + ++   +      + L +      K+ E    ++   
Sbjct: 298 VPMAMFDKEMRYQAHSQRWLTQYNLEGQSILNRSYYEVLPDIPDRWRKMHE----RSLTG 353

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKY 429
            + SV +      D W   +G T+ +    +P        GG + + + +   V+     
Sbjct: 354 EVVSVSE------DAWKREDGSTVFLRWAIHPWYAPDGEVGGIVLVSDRINELVEAREAA 407

Query: 430 NTLVKVQGETIDHLSEGV 447
               +V+ + + ++S  +
Sbjct: 408 IEASRVKSQFLANMSHEI 425



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 43/145 (29%), Gaps = 17/145 (11%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I ++   T       K     +     ++  ++G+  +         N     +     +
Sbjct: 138 IRIYRAETKATQASQKLKESEERYRLVLEGANDGIWDWDLSKNEVYWNDRLLEIVGLSRS 197

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                     I A   R + E             ++  RK+L+  LE  ++  +E+ ++ 
Sbjct: 198 EFG-----SAIEAFFDRLHPED------------YESTRKALEAHLETGTEYNVEFRLLH 240

Query: 533 LPNAQTMLTFVNVTDSVRAERALTE 557
             +     T        +  +AL  
Sbjct: 241 SSDVYRYCTGRGKAQRNQQGKALRM 265


>gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
 gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
          Length = 1611

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 154/838 (18%), Positives = 288/838 (34%), Gaps = 95/838 (11%)

Query: 15   EICTLFSCKIAVFGTIAGMLLTTIIPIILL--IRQRNSLAKKVNETYSFLSEICDQLSKY 72
            ++  +    +          L  ++  + L  +R R  LA+ +       S +   L   
Sbjct: 304  DMSAIMPMGLRWMVGGGAFALFALVGAMALDALRNRRRLAESMQR----FSVLGAALENS 359

Query: 73   H-SLLTENNCLTIVWDGK--------------DETPEIIGQLHQRIDIPQTD-TDLLSFE 116
              S++  +    I W                    P I    H      +   + LL+  
Sbjct: 360  PISIVITDAEGVIAWVNPQYERNTGYTLGEVRGRKPSIAASEHTPAGTYRDMWSRLLAGH 419

Query: 117  NWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYS 176
            +W          +   + R++G  +   A          +GR     A + +L       
Sbjct: 420  SW--------RGRFVNR-RRDGTLYHEEATLS--PVFDAKGRRI---AIVGLLQDVTARI 465

Query: 177  ELA-ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            E A E   + + LS  +     LFD+   +V      G I   N +  +   +       
Sbjct: 466  EAAQELERRERHLSELLEQQTALFDNAPPIVLV--CDGQIRQFNRALAELLRSSDEAL-- 521

Query: 236  AIGESRKLFKEEIKKRMISSS------ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
            A    ++LF  E      ++       A      + V     G + + ++          
Sbjct: 522  AGTPVQELFGGEAGYGAFTARTVPMLLAGGSVREQAVLRRPDGTSFTARMAGRGLKMEGV 581

Query: 290  GIA-----IDVSKEITVNDQLTHTYEILHNLTVA--IAIFDQN---RYLQFHNRSFVELW 339
             IA      DV++              L     A  I +FD N   + +   +    +L+
Sbjct: 582  QIASLWVIEDVTEAQRAEAATREANARLELAQEAGHIGVFDYNLLTQRMV-WSPQLEQLY 640

Query: 340  EIDLAFLATNPSNDELLEFLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LP 395
                A L             ++      PE               +     +D+W     
Sbjct: 641  G--AASLPAQKDGHAAERPFQAWVDVIHPEDRARVQGLLAQAQAGQGGGRLRDSWRIVRA 698

Query: 396  NGQTLHVIVTSN---PRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +G T  ++ T+       G     I +  ++  Q  LE +    +  Q   ID +   + 
Sbjct: 699  DGSTRWILCTARVVRDEAGQAARIIGVQVDVHDQKMLEARVAEQLAFQQALIDAIPVPLF 758

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                 GR    N A+   +         G  + ++      +    +   L A    +  
Sbjct: 759  YKDAQGRYLGFNRAYVQAFDIHTEDF-IGKTVLDL-----EFLPMLERERLHADTEAALR 812

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPN--------AQTMLTFVNVTDSVRAERALTEKNE 560
              +   +      +D ++ +++  L             + TFV+V+D  RAE  L    E
Sbjct: 813  GAQSVHREVAMPYADGLVHHTMFWLHGFNRPDGSAGGVIGTFVDVSDRQRAEVELRRAKE 872

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               +   +K+ F+ ++S+E+R+PL  IIG + L   S    L+++QS YV  +  +   L
Sbjct: 873  LAEETAALKSRFLANMSHEIRTPLNAIIGMSHLALKS---GLDARQSGYVVRMQQAGQHL 929

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
            L ++NDILD + ++AG + +  S   L+ +L  V   +  K     + + +     +   
Sbjct: 930  LGVINDILDFSKIEAGKLVVERSPFALDRMLEGVADVVGFKAAAKGLELVLDVAPDVPQH 989

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMC 735
             V D  RL QI     +NA+ F+ +G   ++++  R+ G      F V++ G  I     
Sbjct: 990  LVGDALRLGQILINFANNAVKFTEQGEIHLLVRLERNEGARVWLRFEVRDTGIGIAPQQM 1049

Query: 736  KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + +F  F        RR  G GLGL+I +S   L GG V + S     +     +P +
Sbjct: 1050 QRLFQSFEQADTSTTRRYGGTGLGLAISKSLAELMGGEVGVRSELGHGSAFWVTVPLE 1107


>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1792

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 121/737 (16%), Positives = 260/737 (35%), Gaps = 73/737 (9%)

Query: 94   EIIGQLHQRIDIPQ--TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC 151
            ++   L Q +           L           +  ++    L+ +G  F        + 
Sbjct: 559  QVEALLPQELGERHVLERQTFLREGR----DRSMANARHVRALKADGNEF------IAEI 608

Query: 152  AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            A+ I               +     ++ +     +K+ +    F+ L  ++   V +R +
Sbjct: 609  ALSILPTAFDGQ-----RQVAASIRDMTQKLAVEQKIRDSEQRFRGLVTNIPGAV-YRTR 662

Query: 212  AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS---------SALEKNF 262
             GD+ +         E  G    + I   ++ F   I +    +         +  E   
Sbjct: 663  IGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRPTCHLHIDRALAQQETFE 722

Query: 263  CETVSTLEHGNNKSYK------IVRVLNSFGEAGIAIDVSKE----ITVNDQLTHTYEIL 312
             E       G+ +                    G   D+++     + +         I 
Sbjct: 723  VEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESKLALVQLEQSRQQMTNIT 782

Query: 313  HNLTVAIAIFD----QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             ++   +         +R   F + + +++  +    L +N   D + E +    +    
Sbjct: 783  ESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRDDLMSN--FDIIAERIFDEERPDVV 840

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIW--MFENLTVQ 422
                   E+     +     +  +  PNG    +   ++      G   W     ++T +
Sbjct: 841  RALSGKSEDRLQWIR-----EFRYRHPNGSICWMEAGASGHLGEEGALTWNGYVMDITQR 895

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              +E +            D  + G+      G I   N  F +      N L     I  
Sbjct: 896  KTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCADMALSRNHLRNTA-IFE 954

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---- 538
            + +   +   ++   +L    I  +  ER  ++ +   L    +  ++  L +AQ     
Sbjct: 955  VLSEQDQPIAKAQFQELVEGKIDHYRGERSFIRPSGAPL---WMTVNVSALLDAQGQFES 1011

Query: 539  -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +++ V++T+       L    E    A + K  F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   L+ KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++   
Sbjct: 1072 E---LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128

Query: 658  IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
             + K     I +       +    + D  RL Q+   +++NA+ F+ +G  +    +++ 
Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
              D+    FSV+++G  + E     +F  F        R   G GLGL+I +  + L GG
Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248

Query: 771  HVSISSSDEGVTTINCR 787
             + + S     +T    
Sbjct: 1249 KIGVESQLGHGSTFYFT 1265



 Score = 42.2 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 129/419 (30%), Gaps = 63/419 (15%)

Query: 164 AFLRILSLDGIYSELAETTLKCKK--LSNHISVFKVLFDSLDFLVWHR--DQAGDILWAN 219
           A   I++L   ++++AE     ++  L +  + F  L D +    ++   D  G +    
Sbjct: 363 AVSEIVTLSNTFNQMAELLADREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQL---- 418

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
                          K +G S  L K + ++   ++   EKN+  T   L  G N     
Sbjct: 419 -------AQVSEGVTKVLGISPDLLKRKYQRLFSANPLNEKNWQYTDLAL-KGQNVPSHQ 470

Query: 280 VRVLNSFGE--------AGIAIDVSKEITVNDQLTHTYE----------ILHNLTVAIAI 321
           V +L+  G           +  D ++ ++V    T   E          +L     A+ I
Sbjct: 471 VEMLDDQGHLRRLDVFMQPLMSDTNELMSVEMLFTDVTEQFSAAVWSNAVLEAAPEAMLI 530

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
            D+   + F N   ++L+  +   +        L + L   + L  Q   +  ++   + 
Sbjct: 531 VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMAN 590

Query: 382 YKSSETHKDTWHLPNGQTL--HVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVK 434
            +     K      +G      + ++  P     +        ++T ++ +E K     +
Sbjct: 591 ARHVRALK-----ADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQ 645

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                + ++   V               +R+             +I  I    +  + E 
Sbjct: 646 RFRGLVTNIPGAV---------------YRTRIGDVWFMEYISDNIAEITGYAASQFIE- 689

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNAQTMLTFVNVTDSVRAE 552
           +    FA++I   D     L     L      E    I   +            S   E
Sbjct: 690 NRQRTFASLILEEDRPTCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEE 748


>gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 617

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 173/372 (46%), Gaps = 36/372 (9%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +++LET+   L        +  S+ + VF  D R+   NPA + L   +      G H++
Sbjct: 279 RIELETEKKNL------IFNASSDAILVFS-DNRLIQVNPAGKKLLGID----QLGEHLQ 327

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           ++   C    +E    D  + I       R      +  L    LE      P       
Sbjct: 328 DLDKICDVGIDEILNLDSPSII-------RIETSIGIRELEVRKLE------PENPNDNQ 374

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +     V  +R L          D  K++F+  VS+ELR+PL +++GF +++ +   G 
Sbjct: 375 KIITMRDVTEQREL----------DRAKSNFISMVSHELRTPLNSVLGFANVILSGATGP 424

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q +++EYI ASS  L+ LV+DILDL+ +DAG   L+ S ++   +  +V   ++  
Sbjct: 425 LSDRQREFLEYIQASSRHLVQLVSDILDLSRMDAGTFTLHKSKVLPEIIAKQVVSQLSGL 484

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E NI +  +SD K+    AD +R+ Q+   ++ NA+ F+  G  VI++        +F
Sbjct: 485 AAEQNIELAFLSDKKIPKIEADGRRVEQVLINLVGNAIKFTPPGGKVIVRVRNQGDHVLF 544

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV + G  I E+    +F RF       +   +G GLGL+I +S +  HGG + + S+  
Sbjct: 545 SVSDTGPGISEEDMDRIFERFYQPIMNPQAATKGTGLGLAIAKSLVEQHGGKIWVDSTPG 604

Query: 780 GVTTINCRIPSK 791
              T    +P K
Sbjct: 605 QGATFYFTLPIK 616


>gi|158338213|ref|YP_001519390.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158308454|gb|ABW30071.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 3309

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 122/678 (17%), Positives = 240/678 (35%), Gaps = 81/678 (11%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVF 233
            +E+ + + +             + ++ D + W +   G   ++N +  +      + ++ 
Sbjct: 2415 AEVQDISDRKAAEKVLQFTQYSVDNAADCIFWIK-PDGGFAYSNHAASRMHGYSIDDLML 2473

Query: 234  QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV----RVLNSFGEA 289
                  +  + K        +         E+      G     +IV             
Sbjct: 2474 MSVFDVNPTISKAFWSPHWQTIKEQGSVSLESQHQNRDGQLFPVEIVANYLEFEGEEYNF 2533

Query: 290  GIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
                D+S       +L     H   +L+N+     + D +      N  F +   + +  
Sbjct: 2534 VRVRDISARKAAEQELILKQNHLEALLNNIPQMAWLKDADSQFIAVNEPFAQACGLSVGE 2593

Query: 346  LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTLHVI 403
            +      D           +  Q   ++++E+ F V  S   +  ++ +   +G    + 
Sbjct: 2594 IIGLTDCD-----------IWPQDMAQSYREDDFKVMASGHRKRVEEPFSQADGTLGWLE 2642

Query: 404  VTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
             T  P         GT+ +  ++T +   E +     ++    +D + + V     +   
Sbjct: 2643 TTKTPFQDEQGRMAGTVGIAADITERKAAEQELYESKQLLKLVLDTIPQKVCWKDRNSVY 2702

Query: 457  KLSNPAFRSLWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDL--FAAIIT 505
               N AF  +             +  L   T        C +    +   +L     I+T
Sbjct: 2703 LGCNQAFTEMAGFTSSDEIVGQTDYELPWKTEEAEFFIECDQRIMSTAKAELGIVEPILT 2762

Query: 506  S-------------FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-- 550
            +               D + ++ G L ++ D      I PL  A+  L  +N     R  
Sbjct: 2763 ADGKNAWLSTNKAPLRDVQGNVMGILAMIED------ITPLKQAEETLKNINEELEARVS 2816

Query: 551  --------AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                       AL E  E    A++ K+ F+ ++S+ELR+PL  I+G+  +L  S    +
Sbjct: 2817 ERTAALEQTNHALAEAKEIADSANQAKSEFLANMSHELRTPLNGILGYAQILNRS--DQI 2874

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +  + +E I    + LL L+NDILDL+ ++A  ++LN     L  LL+ V      K 
Sbjct: 2875 SPRDKRGLEVIHQCGSHLLTLINDILDLSKIEARKLELNPHPTDLLTLLSSVVDMFHLKA 2934

Query: 663  HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNG 717
             +  I +    D  L      D +R  Q+   ++ NA+ F+ KGS       L+A     
Sbjct: 2935 TQKGIELLFQLDNDLPKGVEIDEKRFRQVLINLMGNALKFTEKGSVTFQILQLEANAGQA 2994

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F++ + G  I  +    +F  F      R    G GLGL+I +  + L GG + +SS
Sbjct: 2995 TLRFAIIDTGVGIATEQLSRLFKAFEQVGDPRNHTEGTGLGLAISQRIVQLMGGDIQVSS 3054

Query: 777  SDEGVTTIN--CRIPSKE 792
                 +  +    +P  +
Sbjct: 3055 QLGAGSEFSFCVTVPLAQ 3072



 Score = 77.7 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 90/297 (30%), Gaps = 39/297 (13%)

Query: 165  FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            F+R+  +    +   E  LK   L         L +++  + W +D     +  N  + +
Sbjct: 2533 FVRVRDISARKAAEQELILKQNHLE-------ALLNNIPQMAWLKDADSQFIAVNEPFAQ 2585

Query: 225  NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNNKSYK 278
                 G+   + IG +      +   +       +         +E       G     +
Sbjct: 2586 AC---GLSVGEIIGLTDCDIWPQDMAQSYREDDFKVMASGHRKRVEEPFSQADGTLGWLE 2642

Query: 279  IVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              +           G  GIA D+++      +L  + +    +L  +   +   D+N   
Sbjct: 2643 TTKTPFQDEQGRMAGTVGIAADITERKAAEQELYESKQLLKLVLDTIPQKVCWKDRNSVY 2702

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
               N++F E+     +      ++ EL        K  E   +    + I S  K+    
Sbjct: 2703 LGCNQAFTEMAGFTSSDEIVGQTDYEL------PWKTEEAEFFIECDQRIMSTAKAELGI 2756

Query: 389  KDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGE 438
             +     +G+   +     P         G + M E++T     E     + +    
Sbjct: 2757 VEPILTADGKNAWLSTNKAPLRDVQGNVMGILAMIEDITPLKQAEETLKNINEELEA 2813



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 73/592 (12%), Positives = 172/592 (29%), Gaps = 66/592 (11%)

Query: 29   TIAGMLLTTIIPIILLIR-------QRNSLAKKVNETYSFL----SEICDQLSKYHSLLT 77
             +  +L    I  I   R       +R +   +  +    L     E+  ++    + L 
Sbjct: 1617 GVICILDYETIENIEFARMVLQVFGERAAAELERQQAQEALEQLNQELEARVRDRTAQLA 1676

Query: 78   ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFEN-----WLKFHHYIKLSKATE 132
             +         +     ++      ID  Q   DL  +        L+ +      +A  
Sbjct: 1677 ASEQRLQTLFNQAADAVLLLGEEGFIDCNQAAIDLFRYTQKSEIVTLQPYQISPERQADG 1736

Query: 133  KLRKEGQSFDLVAETQNDCAI------KIEGRVSGSCAFLRILSLDGIY------SELAE 180
            +L  +  +  +    Q   +       + +G    +   L  +   G         ++++
Sbjct: 1737 QLSVDKTAAIMEETLQKGSSQFEWLHQRADGETFWAEVSLTPIQYQGELIVHSIIRDISD 1796

Query: 181  TTLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTETEGIVFQKAIG 238
                   L    + ++ L  +LD  V+    D    + + + +    +      F     
Sbjct: 1797 RKAAEISLRESEAKYRNLLSNLDGAVYRSQYDADWTLEFVSDAIADLSGYPAADFIDNRH 1856

Query: 239  ES---------RKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKSYKIVRVLN 284
             S          +       K + +  +    +       ++  +       +       
Sbjct: 1857 RSYASIIHPDDVERVDRIAAKAVAARQSFSMEYRILHRDGSIRWVTEKGKGIFN--ESNQ 1914

Query: 285  SFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELW 339
                 G+  D+S    +   L               V     D   +     N  F +L 
Sbjct: 1915 FLYFEGVIFDISDRKQMETALHLSEARAKATFEQAAVGFLEVDISTQQCVRVNDHFCQLI 1974

Query: 340  EIDLAFLATNPSNDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
                A L    S  E    + +  +  + +QL     +E      +     KD+ +  + 
Sbjct: 1975 GYSRAELL-GMSVIEFTHPDDIHESKAMLQQL---YAQEIEDFTLEKRYLRKDSTYFWSE 2030

Query: 398  QTLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLV---KVQGETIDHLSEGVAVFGPD 453
             T+ ++   +     ++ + ++++ +  LE ++       ++    ++   + +     D
Sbjct: 2031 TTVFLVDLQDGEAVYSVGLVQDISEKKRLEAEHEQAEANSRLLASVVESTDDAIITKTLD 2090

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            G I   N +  +L+   E   + G  I  +     RY  E +              E   
Sbjct: 2091 GTITSWNQSATNLFGYTEAE-AMGQPILMLFPP-DRYKEEVEIIARLKNKECIEHFETIR 2148

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            L  T   +    +  +I PL ++Q  +   +       ER   E+   L K 
Sbjct: 2149 LHKTGHPID---ISVTISPLIDSQGEVIGASKIVRDIRERKAREQELILTKF 2197



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/445 (13%), Positives = 138/445 (31%), Gaps = 51/445 (11%)

Query: 133  KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
            +L K G   D+         I  +G V G+   +R +              + K     +
Sbjct: 2148 RLHKTGHPIDISVTIS--PLIDSQGEVIGASKIVRDI-------------RERKAREQEL 2192

Query: 193  SVFKVLFDSLDFLVWHRDQAGDILWAN-ISYKKNTETEGIVFQKAIGESRK-LFKEEIKK 250
             + K   ++ +  ++  +  G  +  N  +  +       +    + +     F E+  +
Sbjct: 2193 ILTKFALENTEIGIFWINSDGQFISVNESACIRLGYDPDELCNLYVWDITPGFFAEDWLE 2252

Query: 251  RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA------IDVSKEITVNDQ 304
                 S    +  E     +  +   + +  + N     GI        D+S+      +
Sbjct: 2253 HWTEISKKGYSRFEVFH--QAKDKTIFPVEIMSNYIEYQGIGYLFAQVQDISERKAAEKE 2310

Query: 305  LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
               T     N   +I   ++   L   NRS           L           F+   + 
Sbjct: 2311 RILTQFASENTATSIFWINRTGSLINVNRSACATLGYPPDELKQM--------FIWDIDP 2362

Query: 365  LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENL 419
            L     W  + E +       E  +  +   +G T  V +  N       G      +++
Sbjct: 2363 LFPAEVWSNYWEQL--SLNGYERFESLFQAKDGSTFPVEIMGNYLEYEGEGYIFAEVQDI 2420

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            + +   E     +++    ++D+ ++ +    PDG    SN A   +     + L     
Sbjct: 2421 SDRKAAEK----VLQFTQYSVDNAADCIFWIKPDGGFAYSNHAASRMHGYSIDDL-MLMS 2475

Query: 480  IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQ 537
            + ++  T S+ +       +      S + + ++  G L    +  + LE+         
Sbjct: 2476 VFDVNPTISKAFWSPHWQTIKEQGSVSLESQHQNRDGQLFPVEIVANYLEFE----GEEY 2531

Query: 538  TMLTFVNVTDSVRAERALTEKNEAL 562
              +   +++    AE+ L  K   L
Sbjct: 2532 NFVRVRDISARKAAEQELILKQNHL 2556



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/405 (13%), Positives = 118/405 (29%), Gaps = 45/405 (11%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            SE      + ++   +  +   + +S D  +  +   G I   N S    T   G    +
Sbjct: 2054 SEKKRLEAEHEQAEANSRLLASVVESTDDAIITKTLDGTITSWNQS---ATNLFGYTEAE 2110

Query: 236  AIGESRKLFKEEIK----KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS------ 285
            A+G+   +     +      +I+    ++      +   H       I   ++       
Sbjct: 2111 AMGQPILMLFPPDRYKEEVEIIARLKNKECIEHFETIRLHKTGHPIDISVTISPLIDSQG 2170

Query: 286  --FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               G + I  D+ +      +L  T   L N  + I   + +      N S       D 
Sbjct: 2171 EVIGASKIVRDIRERKAREQELILTKFALENTEIGIFWINSDGQFISVNESACIRLGYDP 2230

Query: 344  AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHV 402
              L      D    F               W E+   + K   +  + +H   +     V
Sbjct: 2231 DELCNLYVWDITPGFFAED-----------WLEHWTEISKKGYSRFEVFHQAKDKTIFPV 2279

Query: 403  IVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
             + SN       G      ++++ +   E +      +     ++ +  +      G + 
Sbjct: 2280 EIMSNYIEYQGIGYLFAQVQDISERKAAEKERI----LTQFASENTATSIFWINRTGSLI 2335

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              N +  +      + L     I +I          +    L       F+   ++  G+
Sbjct: 2336 NVNRSACATLGYPPDELKQMF-IWDIDPLFPAEVWSNYWEQLSLNGYERFESLFQAKDGS 2394

Query: 518  ---LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
               +E++  + LEY               +++D   AE+ L    
Sbjct: 2395 TFPVEIM-GNYLEYE----GEGYIFAEVQDISDRKAAEKVLQFTQ 2434



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 96/289 (33%), Gaps = 35/289 (12%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI-IGQLHQRI 103
            I  R +  +++    + L  + + + +   L   ++    V +   +   + +G++    
Sbjct: 2539 ISARKAAEQELILKQNHLEALLNNIPQMAWLKDADSQFIAVNEPFAQACGLSVGEIIGLT 2598

Query: 104  DI---PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVS 160
            D    PQ        +++       +  K  E+   +        ET        +GR++
Sbjct: 2599 DCDIWPQDMAQSYREDDFKVMASGHR--KRVEEPFSQADGTLGWLETTKTPFQDEQGRMA 2656

Query: 161  GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
            G+          GI +++ E     ++L     + K++ D++   V  +D+    L  N 
Sbjct: 2657 GTV---------GIAADITERKAAEQELYESKQLLKLVLDTIPQKVCWKDRNSVYLGCNQ 2707

Query: 221  SYKKNTETEGIVFQKAIG----------ESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
            ++ +          + +G          E  + F E  ++ M ++ A        ++   
Sbjct: 2708 AFTEMAGFTS--SDEIVGQTDYELPWKTEEAEFFIECDQRIMSTAKAELGIVEPILTA-- 2763

Query: 271  HGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILH 313
             G N      +           G   +  D++      + L +  E L 
Sbjct: 2764 DGKNAWLSTNKAPLRDVQGNVMGILAMIEDITPLKQAEETLKNINEELE 2812


>gi|237714293|ref|ZP_04544774.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408330|ref|ZP_06084877.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229445785|gb|EEO51576.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353882|gb|EEZ02975.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 926

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 124/663 (18%), Positives = 262/663 (39%), Gaps = 67/663 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +   E      K+    +    LF  +      +   RD+       N   
Sbjct: 279 WFSSLGNIINICIELRKTKDKVIREQTFLNNLFHFMPMGYIRMSIIRDEN------NKPC 332

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +          + NF E +                
Sbjct: 333 DYRVTDANEVSSTFFGLPLESYIGSLASEKHPDYLQKLNFLEEILDSNSYREKDEYFPRT 392

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 393 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYL 452

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E     
Sbjct: 453 IDLNNKDLEIFGVVNKSDVIGVNFFDNPNVPQNIRDRVRNEDLVDFRLNYS--FEQAGGY 510

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y++S ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 511 YETSRSNVIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 567

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCSRYYNESDGW--D 498
           +   G A      ++ L N    ++ +  +N        +  + A  S+ + E      D
Sbjct: 568 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLD 621

Query: 499 LFAAIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVT 546
            +  +    D +R+  QG + +           +S +V+  +  P  N   ++    ++T
Sbjct: 622 FYDGVR---DGKRRHFQGEMRIRRPGTKNEWNWVSSNVMVTNYKPEENEIEIIGINYDIT 678

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++     +++
Sbjct: 679 ELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL---AER 735

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  E  
Sbjct: 736 QEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKE-E 794

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +       +   ++DR R+ Q+ S  ++NAM F+S+GS + +     +G+  F V++ 
Sbjct: 795 VELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDT 853

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +F RFV         G GLGLSI +S +   GG + + S     +    
Sbjct: 854 GIGIEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWF 911

Query: 787 RIP 789
            IP
Sbjct: 912 TIP 914


>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1117

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 113/531 (21%), Positives = 209/531 (39%), Gaps = 51/531 (9%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLAT 348
            D+S+   +  ++  + E   +   + + +      +      +  F E          T
Sbjct: 195 RDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFSGQFTE---------HT 245

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN----GQTLHVIV 404
               D  +   R    + +    +  ++N+  +          +H       G+ L V  
Sbjct: 246 RTLPDHYVGRTRDE-MISDDTPAEVRRQNLADMAARRPFRDFVYHTREMDGPGRFLRVNG 304

Query: 405 TSNPRG-----GTIWMFENLTVQVDLETKYN-------TLVKVQGETIDHLSEGVAVFGP 452
                      G      ++T +++ E +          L +     ++ + +G+     
Sbjct: 305 KPVFDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSILESVDDGIVGIDL 364

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +GR    N A   L   E   L  G+ I  + A     +     + +   +  S  D+  
Sbjct: 365 NGRATFVNRAAAKLLDFEPAELV-GSDILPLMAL--DLHTAEKLYQILLRLTESIRDDTA 421

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           S +      S   +EY   P+ +       +L F ++T     ER L E  EA    +  
Sbjct: 422 SFKR--RDGSPLPVEYIASPVMDRGNQVGVVLGFRDITQRRLVERQLREAKEAAEAGNRT 479

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  +IG T LL  ++   L+ +Q  + E I  S   LL ++NDIL
Sbjct: 480 KSEFLATMSHEIRTPMNGVIGMTGLLLDTR---LSEEQRHFAETIRDSGESLLTVINDIL 536

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++AG + L+Y+   L  L+  V   +A + H   I I  + D +L   V +D  RL
Sbjct: 537 DFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRL 596

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRF 742
            Q+   +  NA+ F+ KG  V ++ +  +G        F V++ G  IP +    +F+ F
Sbjct: 597 RQVLMNLGGNAVKFTEKGG-VSIEVSLLDGPDAPAMARFDVRDTGIGIPPEAQGRLFSMF 655

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   RR  G GLGL+I      L GG V + S+    +     +P +
Sbjct: 656 SQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLPLE 706



 Score = 71.1 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 102/295 (34%), Gaps = 42/295 (14%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           I  +++E     ++++     F+    S     W           +  +   TE    + 
Sbjct: 193 IMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFSGQF---TEHTRTLP 249

Query: 234 QKAIGESRKLF-----KEEIKKRMISSSALEKNFCETV--STLEHGNNKSYK-----IVR 281
              +G +R          E++++ ++  A  + F + V  +    G  +  +     +  
Sbjct: 250 DHYVGRTRDEMISDDTPAEVRRQNLADMAARRPFRDFVYHTREMDGPGRFLRVNGKPVFD 309

Query: 282 VLNSF-GEAGIAIDVSKEITVNDQLT-----------HTYEILHNLTVAIAIFDQNRYLQ 329
               F G  G A D+++EI   ++L                IL ++   I   D N    
Sbjct: 310 ASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSILESVDDGIVGIDLNGRAT 369

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           F NR+  +L + + A L  +     +   L +A KL          + +  + +S     
Sbjct: 370 FVNRAAAKLLDFEPAELVGSDILPLMALDLHTAEKL---------YQILLRLTESIRDDT 420

Query: 390 DTWHLPNGQTLHVIVTSNP------RGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
            ++   +G  L V   ++P      + G +  F ++T +  +E +     +    
Sbjct: 421 ASFKRRDGSPLPVEYIASPVMDRGNQVGVVLGFRDITQRRLVERQLREAKEAAEA 475



 Score = 37.6 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 11/179 (6%)

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           +T       + +  +++ +  +E +     +   +     S+     GPD R    +  F
Sbjct: 182 LTPTGSPQFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFSGQF 241

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI-ITSFDDERKSLQGTLELLS 522
               +T  +     T    I+          +  D+ A      F    + + G      
Sbjct: 242 TEHTRTLPDHYVGRTRDEMISDDTPAEVRRQNLADMAARRPFRDFVYHTREMDGP----- 296

Query: 523 DSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              L  +  P+ +A    T       ++T+ + AE  L      + +  E  NS ++ V
Sbjct: 297 GRFLRVNGKPVFDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSILESV 355


>gi|300864100|ref|ZP_07108999.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337916|emb|CBN54145.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1865

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 113/650 (17%), Positives = 244/650 (37%), Gaps = 47/650 (7%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGI- 231
            +  ++ +       L+      ++  D      W  +    ++ W N ++ +    E   
Sbjct: 974  VAKDITDRKRAEAALAKSEEQLRLTLDFTHIGTWDWNVHTNEVNW-NDNHFRLLGVEPQQ 1032

Query: 232  ------VFQKAIG-ESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKSYKI 279
                  +++KAI  E     ++ +   +   +  E  +       TV  L       Y  
Sbjct: 1033 ASDPYQLWRKAIHPEDLDRIEQALSNALFQHTDYEAEYRVVYPDGTVRWLVGKGRGIYN- 1091

Query: 280  VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHNRSFVEL 338
                      G+  DVS        L     I  ++   I +   +   + + N  F ++
Sbjct: 1092 -EAGEPLKMLGVIFDVSDRKLAEQTLELQAVITRSMAEGICLVRADNGLIIYANPKFEQM 1150

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NG 397
            +  D   +         +    +    PE++N    +    +V ++ E      ++  +G
Sbjct: 1151 FGYDAGEMNGQHVA---IVNYGNEQIEPEEVN----QAIRTAVLQNGEFAYQVHNVKKDG 1203

Query: 398  QTLHVIVT----SNPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
                   T     +P  G   + + +++T +   E       +   +  +++ +   +  
Sbjct: 1204 TPFWCSATCSVFKHPEYGDVMVAVHQDITDRTQAEAALRESEEKFRQFAENIQDVFWMTD 1263

Query: 452  PD-GRIKLSNPAFRSLW-KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
                ++   +PA+  +W ++ E   S   +         R   E+   +     I   + 
Sbjct: 1264 NQTQQLLYVSPAYEIIWQRSCETLYSNPLNWLATIHPDDRPQVEAAYIEQQKTGIYDREY 1323

Query: 510  ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
                   ++  + D             +      +++D  + E  L    EA   A+  K
Sbjct: 1324 RIVRPDNSIRWIRDRGFPIRDEAGNIIRMTGIAEDISDRKQTEVELAAAKEAAVAANRAK 1383

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            + F+ ++S+E+R+P+  I+GF+DLL+ S     + +   Y+  I+AS   LL L+NDILD
Sbjct: 1384 SEFLANMSHEIRTPMNAILGFSDLLQGSIS---DPQPRAYLNSIAASGRTLLALINDILD 1440

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLL 688
            L+ ++AG ++L Y  + +  L+ E+++ +  K  + ++ + V  D  + +  + D  RL 
Sbjct: 1441 LSKIEAGKLQLQYEPVDVRSLVREIQEILDPKALKKSLSLLVEIDENVPTAILFDPIRLR 1500

Query: 689  QIFSKILSNAMDFSSKG-STVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFNR 741
            QI    + NA+ F+  G   + ++A  D            ++ + G  I  +   S+F  
Sbjct: 1501 QILFNTVGNALKFTEAGFVKISVRAQLDLSPSSNRVQIEITIADTGIGICLEQQHSIFEA 1560

Query: 742  FVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F  +      +  G GLGL+I +    + GG V + S     +      P
Sbjct: 1561 FKQSEGQSTRKYGGTGLGLAITKRLTEMLGGTVRLESELGKGSAFTFIFP 1610



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/438 (14%), Positives = 129/438 (29%), Gaps = 46/438 (10%)

Query: 156 EGRVSGSCAFLRILSLDGIY------SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
           +G V  + A +  L L+G         +++E  +    L      F+ +F+     +   
Sbjct: 573 DGTVFPAEASISKLELNGEKIYTAILRDISERKIAETSLREREERFRKVFEEGPIGMAIV 632

Query: 210 DQAGDILWANISYKKN-----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE 264
                 +  N    +      +E   + F             ++ +R+      E  F +
Sbjct: 633 GLDYRFIKVNPMLCQMIGYTESELLALTFSNITHPDDLEIDVQLAQRLFKG---EVPFYK 689

Query: 265 TVSTLEHGNNKSYKIV--------RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLT 316
                   N ++  +         R         +  D++        L     I+    
Sbjct: 690 IEKRYLKKNQETIWVSLTGSIVRDRDGQPIYYIAMIEDITNRKRAEKSLQQYERIVSTTL 749

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             I + +++   Q  N +++  +      +  +   D +        ++ E L+    + 
Sbjct: 750 DGIVLLNRDYIYQIANPAYLSWYNKSSHEIIGHSVKDIV------GQEVFENLSPALEQA 803

Query: 377 NIFSVYKSSETHKDTWHLPNG-QTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYN 430
                 ++ +  K   HLP G + L V  T          G +    +LT   + E    
Sbjct: 804 L---AGETIQFEKLFEHLPGGKKFLSVTFTPYFAVEQEISGVLISLRDLTKLKEAENSLQ 860

Query: 431 TLVKVQGETIDH--LSEGVAVFGPDGRIKLSN--PAFRSLWKTEENRLSPGTHIRNIAAT 486
                     +   +  G+        + +S+   A +    T E   +          T
Sbjct: 861 QSESTLRSFFNSGAMPMGIVELHNGDILHISDNWAAAQFFESTPEAMQNQFASALGSPPT 920

Query: 487 CSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
               +               F+   E  + QG    LS SV    + P    +      +
Sbjct: 921 TIEQWTTYYQQSQQIQAPVRFEHFYETSTKQG---WLSVSVCPIELSPSGYPRFCYVAKD 977

Query: 545 VTDSVRAERALTEKNEAL 562
           +TD  RAE AL +  E L
Sbjct: 978 ITDRKRAEAALAKSEEQL 995



 Score = 54.9 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 106/329 (32%), Gaps = 22/329 (6%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L    +++     AI   D N  + F N     L+       A   +  +LL        
Sbjct: 361 LQDQAQLIDLAHDAILTVDLNDAITFWNHGAAVLYGFSQTE-ALGKTLAQLLSTNFPKPL 419

Query: 365 LP---EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
                E   +  W+  +    +   T           T+   +   P+G  + +  ++T 
Sbjct: 420 TEIKKELFEYGRWEGELIQQ-RGDGTLIFVASRW---TVQRDLAGKPKG-IMKINADITK 474

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
               E           + +D   + +        I L N     ++      +   +   
Sbjct: 475 SKQAEKALIYSSLRLSKILDIAKDAIISVDDLQTITLFNKGAEKIFGYTAAEVLGKSLTL 534

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTML 540
            + +     Y+E       +   T   +ER  + G  +  +    E SI  L  N + + 
Sbjct: 535 LLPSRFDSVYSEKFTNVPQSDEKTRRMEERNEVFGRRKDGTVFPAEASISKLELNGEKIY 594

Query: 541 TF--VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR----SP-LTNIIGF--T 591
           T    ++++   AE +L E+ E  RK  E     +  V  + R    +P L  +IG+  +
Sbjct: 595 TAILRDISERKIAETSLREREERFRKVFEEGPIGMAIVGLDYRFIKVNPMLCQMIGYTES 654

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +LL  +     +      +E     +  L
Sbjct: 655 ELLALTFSNITHPDD---LEIDVQLAQRL 680



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 18/166 (10%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           ++  +     +   +  + + N+SF  L +  L  L          +FL S        +
Sbjct: 63  LVEEMQQGAVVLSTDGLILYCNKSFSNLLKQPLEKL-----IGSYFQFLIS------PHD 111

Query: 371 WKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNPRG-----GTIWMFENLTVQVD 424
              ++  +           + + L  +G  + V ++ NP           +  +LT Q  
Sbjct: 112 TPLFQARVQQAEMGDRHPVEMFLLARDGVEIPVYLSINPLILDDSPINCLVITDLTEQKR 171

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            E       K+    ++   E + V    G+I  ++   + LW   
Sbjct: 172 HEKTI-ASEKLARLILEQAGEAILVCDHTGQIIRASAIAQQLWGEN 216


>gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 1245

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 116/595 (19%), Positives = 227/595 (38%), Gaps = 34/595 (5%)

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           W   +     + N + +  T  EG   +      R     E   +++S    E+N   T 
Sbjct: 384 WQTRR----SFVNPASQLLTHLEGCSQEPRKPPERMTIGWEPWFQLVSR-IFEENQQYTR 438

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
              E  N +  K+V       +               +      +L ++  AI   D+  
Sbjct: 439 HLAEQ-NRRLDKLVARRTERLK-------ETTERREREYALLRSLLDSIPEAIVFKDKEG 490

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
                N+S   +     + +      + +       +   +  + +   E     Y+   
Sbjct: 491 KYLGCNKSAERMLGYTESEMIGQ---ESIKLTSEEQSVRIKAEDGRVLSERTPLRYQEKV 547

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                  L +   L          G I ++ ++T + +   +     +     +D + +G
Sbjct: 548 ELAGKPVLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDG 607

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIIT 505
           +  +  D    + NPA+ S+   + N        I  +     R   E    +  +  I 
Sbjct: 608 LWDWYLDSEQIICNPAYYSMLGYKTNEFPALVSTIDALIHPDDRIRVEEYRDEYLSDPIG 667

Query: 506 SFDDER----KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           +FD E     KS +    L    V+E++    P  + + T  ++T     E  + E  + 
Sbjct: 668 AFDIEFRMKGKSGEYHWLLSRGRVVEFTTDNQP-KRMVGTHKDITRHKSNEVVMLEAKQD 726

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K+ F+ ++S+E+R+P+  IIG   L + +   SL  +Q  Y++    S+  LL
Sbjct: 727 AESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRT---SLTPQQEDYLDKAGFSAQSLL 783

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG ++L   +  L+ +L+      A K  E  + + + +    G  +
Sbjct: 784 RIINDILDFSKIEAGKLELERVSFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLIL 843

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMC 735
             D  RL Q+   +LSNA+ F+  G  + L               F V++ G  I ++  
Sbjct: 844 EGDPLRLGQVLINMLSNAVKFTQSGE-IELGCEDVGERDHRITLKFWVRDTGIGISKEQQ 902

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +S+F+ F        R   G GLGLSI +  +++ GG + + S     +T +  I
Sbjct: 903 ESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSEMGVGSTFSFTI 957



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 100/303 (33%), Gaps = 25/303 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L DS+   +  +D+ G  L  N S ++  
Sbjct: 446 RLDKLVARRTE--RLKETTERREREYALLRSLLDSIPEAIVFKDKEGKYLGCNKSAERML 503

Query: 227 ET--EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL- 283
                 ++ Q++I  + +     IK       +              G       +++  
Sbjct: 504 GYTESEMIGQESIKLTSEEQSVRIKAEDGRVLSERTPLRYQEKVELAGKPVLLDTLKLPF 563

Query: 284 -----NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFHNRS 334
                   G   +  DV++E    +QL  + E  H    A+   ++D   +      N +
Sbjct: 564 YNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPA 623

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKS--SETHKDT 391
           +  +            S  + L       ++ E  + + +     F +      ++ +  
Sbjct: 624 YYSMLGYKTNEFPALVSTIDALIHPDDRIRVEEYRDEYLSDPIGAFDIEFRMKGKSGEYH 683

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLT-----VQVDLETKYNTLVKVQ--GETIDHLS 444
           W L  G+ +     + P+   +   +++T       V LE K +         E + ++S
Sbjct: 684 WLLSRGRVVEFTTDNQPK-RMVGTHKDITRHKSNEVVMLEAKQDAESANLYKSEFLANMS 742

Query: 445 EGV 447
             +
Sbjct: 743 HEI 745


>gi|225874369|ref|YP_002755828.1| two-component hybrid sensor and regulator [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791644|gb|ACO31734.1| two-component hybrid sensor and regulator [Acidobacterium
           capsulatum ATCC 51196]
          Length = 799

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 135/652 (20%), Positives = 246/652 (37%), Gaps = 63/652 (9%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           +RI        +  E     + L+   +    + D++  LV   D +G I+  N S +  
Sbjct: 167 MRIQDRSARARQRVE-----RALTVERNFVSAVLDTMSALVLVLDTSGRIVRFNRSCE-- 219

Query: 226 TETEGIVFQKAIGES--RKLFKEEIKKRM------ISSSALEKNFCETVSTLEHGNNK-S 276
            E  G  F + +G S  R++F  E ++R           AL++ +     T   G  + +
Sbjct: 220 -EISGYSFAELVGRSFIREMFSPEDRERAQQLFEQARQGALQETWEMRWRTRGGGVRRIA 278

Query: 277 YKIVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYL 328
           +    + +  GE    I    DV+ ++   + L  +      L       +   D    L
Sbjct: 279 WASTTLADPAGEVNFVILTGMDVTLQVEAQNALRLSETRYRQLVEGSLGMVCTHDVEGRL 338

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              N    E        +A      +L+EF+   ++         W E + ++ ++ E  
Sbjct: 339 LSINAHAAESLGYTSEEMAGR----KLVEFIPPQHR-------PGWAEYLKAINETGEHQ 387

Query: 389 KDT-WHLPNG----QTLHVIVTSNPRGGTIWMFE--NLTVQVDLETKYNTLVKVQGETID 441
                   +G     T    +   P      +    ++T + + E +   L + +   + 
Sbjct: 388 GMLSLRRKDGGVCVITYRNKLVHFPDMEPFVLGHGVDVTEKNEAEHRLRNLTRQRESILG 447

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            + +G+     +GRI   N A   +   EE  +S G  +  +    SR        DL  
Sbjct: 448 SVGDGIFGMDMEGRITFVNRAALDMVGYEEEEVS-GRDMHALLHH-SRADGTPYPVDLCP 505

Query: 502 AIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                  D    +   +    D     +EY   PL +   +   V     +   + L   
Sbjct: 506 IYKARQLDSPMRVDDEVFWHKDGTCFPVEYVACPLVDNGRVSGIVIAFQDITERQRL--- 562

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                  D +K+ F+  VS+ELR+PLT++     L+    L     K  Q  +    +  
Sbjct: 563 -------DRMKDEFISTVSHELRTPLTSLRAALGLIAGGALQRRPEKVQQMFDVAIGNCD 615

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L+ LVNDILD   + +G M+L Y  +   DLL        +   + NI ++V  + +  
Sbjct: 616 RLVRLVNDILDFERLGSGKMQLQYVQMPARDLLQRAVDLQHSSAQKANITLRV--EAEPM 673

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKS 737
               D  R+LQ    ++SNA+ FS  G+ V+++A+ R   + +  V+++G  IP +    
Sbjct: 674 DLWVDADRILQTLGNLISNAIKFSPAGADVLVRASVRGKAEAVIEVRDHGRGIPPEKISL 733

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +F RF        R   G GLGL+I    +  HGG + + S     ++    
Sbjct: 734 IFERFQQVDASDSRAMGGTGLGLAICRRIVRQHGGQIWVESEVGKGSSFFFT 785


>gi|194334238|ref|YP_002016098.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312056|gb|ACF46451.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 737

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 121/623 (19%), Positives = 244/623 (39%), Gaps = 36/623 (5%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGESRKLF 244
            L   + +     D     +   D  G I + N  + + T   +E ++ QK         
Sbjct: 127 SLKQQVRLLNEAMDQSPVSIVITDFNGLIEYVNPFFCRVTGYSSEDVLHQKVSILKSGEH 186

Query: 245 KEEIKKRMISSSALEKNFCETV-STLEHGNNKSYKIV------RVLNSFGEAGIAIDVSK 297
            ++  + +  + +  K +   + +  + G      I+       V +      I  DV++
Sbjct: 187 SQDFYRILWETISGGKVWQGEICNKKKDGELFWENIIISPVRNNVHSISHFLAIKEDVTE 246

Query: 298 EITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           +I   + L        E+   L   +   D +  + + NR+   ++      L    +  
Sbjct: 247 KIRDKEALATSERRFRELSDLLPQPVFETDGSNTVTYFNRAGYTVFGYKGKDLDRGLNVF 306

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +L  F        E+   K  K    + Y+     KD    P       I+T     G  
Sbjct: 307 QL--FSPQERGTIEENIRKRIKGEKSADYEYRALKKDGSSFPVLVYCAPIMTQAGFQGIR 364

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEEN 472
            +  ++T +   E K              + + + V     G I   N    S +   + 
Sbjct: 365 GIVLDITHRKQYERKIKENEANYRNLFQVIPDPIIVADFKSGNIVHWNRKALSFFGYSKK 424

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAII--TSFDDERKSLQG-TLELLSDSVL-EY 528
            L+  +    +    SR  ++      FA  +   S + + ++  G T+E+L  SVL ++
Sbjct: 425 ELAALS----VEMLFSRTVDDKREMTGFAGTMSTASVEAQIRTKDGFTIEVLVSSVLFDF 480

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S     + + ++ F ++T+  ++ER +        +   +KN F+ +VS+ELRSPL +I+
Sbjct: 481 S----KHKRLLVVFRDITEQKKSERLIK-------ENIRLKNDFIANVSHELRSPLFSIL 529

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+  L   +         +++  I   S  L +L+ D+L+++ +D+G +      I   
Sbjct: 530 GFSSTLLKERKELDFETTGEFLGIIHDESKRLSSLIEDVLNVSRIDSGKVAYKKKIIDPA 589

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++    +S+     E ++   +  + +     AD   L Q+   +  NA+ F+ +   V
Sbjct: 590 PVVIGACESLKMMASEKSVEFSIHVEPETMQVNADPDALKQVVINLAVNAIKFTPRDGCV 649

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINL 767
            +  + D    + +VK++G  IPE     +F +F      G +  G GLGL IV+  I  
Sbjct: 650 RVSLSNDAHWMVLTVKDSGVGIPESDYDKIFEKFYRVERPGEEIEGTGLGLPIVKEIIAA 709

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           H G + ++S  +  +T   R+P 
Sbjct: 710 HKGSIEVNSKKDFGSTFFVRLPL 732



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 100/297 (33%), Gaps = 32/297 (10%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           I     I  ++ E     + L+     F+ L D L   V+  D +  + + N +      
Sbjct: 234 ISHFLAIKEDVTEKIRDKEALATSERRFRELSDLLPQPVFETDGSNTVTYFNRAGYTVFG 293

Query: 228 TEGIVFQKAIGESRKLFKEEIK---KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
            +G    + +    +LF  + +   +  I      +   +        +  S+ ++    
Sbjct: 294 YKGKDLDRGLN-VFQLFSPQERGTIEENIRKRIKGEKSADYEYRALKKDGSSFPVLVYCA 352

Query: 285 SF-------GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHN 332
                    G  GI +D++     E  + +   +   +   +   I + D ++  +   N
Sbjct: 353 PIMTQAGFQGIRGIVLDITHRKQYERKIKENEANYRNLFQVIPDPIIVADFKSGNIVHWN 412

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           R  +  +      LA           +    ++             F+   S+ + +   
Sbjct: 413 RKALSFFGYSKKELAALSVEMLFSRTVDDKREM-----------TGFAGTMSTASVEAQI 461

Query: 393 HLPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              +G T+ V+V+S     +     + +F ++T Q   E      ++++ + I ++S
Sbjct: 462 RTKDGFTIEVLVSSVLFDFSKHKRLLVVFRDITEQKKSERLIKENIRLKNDFIANVS 518



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 8/195 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELL 356
           E ++  Q+    E +    V+I I D N  +++ N  F  +        L    S  +  
Sbjct: 125 EFSLKQQVRLLNEAMDQSPVSIVITDFNGLIEYVNPFFCRVTGYSSEDVLHQKVSILKSG 184

Query: 357 EFLRSA-NKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           E  +     L E ++  K W+  I +  K  E   +     N     V    +     + 
Sbjct: 185 EHSQDFYRILWETISGGKVWQGEICNKKKDGELFWE-----NIIISPVRNNVHSISHFLA 239

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E++T ++  +    T  +   E  D L + V        +   N A  +++  +   L
Sbjct: 240 IKEDVTEKIRDKEALATSERRFRELSDLLPQPVFETDGSNTVTYFNRAGYTVFGYKGKDL 299

Query: 475 SPGTHIRNIAATCSR 489
             G ++  + +   R
Sbjct: 300 DRGLNVFQLFSPQER 314


>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1547

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 115/535 (21%), Positives = 215/535 (40%), Gaps = 55/535 (10%)

Query: 294  DVSKEITVNDQLTHTYEILH--------NLTVAI--AIFDQNR---YLQFHNRSFVELWE 340
            D S      + L    E L         N+ V     +           F +  F+EL  
Sbjct: 552  DQSARKQAEEALRIAEERLEKTAYDLTENIPVGTYTMVQPPEGGMARFAFMSSQFLELTG 611

Query: 341  IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE-NIFSVYKSSETHKDTWHLPNGQT 399
            +     A++P     L+     +      ++  W   N  +  + +    +T  + +G+ 
Sbjct: 612  LTREKAASDP-----LKAFACVH----PDDFDAWVALNAKAFAEKTPFFGETRVVAHGEV 662

Query: 400  LHVIVTSNP----RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF--G 451
              V   S P     G T+W  +  ++T +   E   +  +    + + ++S GV VF   
Sbjct: 663  RWVTAESKPRTLADGTTVWEGVLADITDRKRAEEALSETLGRFNDLVVYMSVGVYVFWIR 722

Query: 452  PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             DGR +     + S      N L     + N A   +  + E     +      + + +R
Sbjct: 723  ADGRQEF---EYVSDGWCAMNHLRREDVLANSAVAFNMIHPEELENFILLNQEAAREKKR 779

Query: 512  KSLQGTLELLSD---SVLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKAD 566
               +G + +  +   +++E + +   N          ++T+ V+ +  L         A 
Sbjct: 780  FHWEGRVVINGEVRFALVESNPVFFDNGDCRWFGIQQDITERVQDQERLRIATMQADAAS 839

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
              K+ F+ ++S+E+R+P+  +IG T LL  +    LN  Q +Y E + +S   LL L+ND
Sbjct: 840  RAKSEFLANMSHEIRTPMNGVIGMTGLLLET---DLNETQRRYAETVRSSGQALLALLND 896

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
            ILD + +++G ++L      L D L+     +A K  E  +     +D  +  + + D  
Sbjct: 897  ILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIGDPG 956

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------DFIFSVKNNGSSIPEDMC 735
            R+ QI + ++ NA+ F+ +G  V+  + +++G             FSV++ G  IP D  
Sbjct: 957  RIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRSQESQEFCMLHFSVRDTGIGIPADKV 1016

Query: 736  KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +F  F        R   G GLGL+I +    + GG V + S +   TT    I
Sbjct: 1017 GDLFQSFSQVDASITRKFGGTGLGLAISKQLAEMMGGDVGVDSVEGQGTTFWFTI 1071


>gi|146276073|ref|YP_001166232.1| histidine kinase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554314|gb|ABP68927.1| histidine kinase [Rhodobacter sphaeroides ATCC 17025]
          Length = 868

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 186/495 (37%), Gaps = 30/495 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
              ++ +  +    A++D ++ L   N ++   +      +    +  +LLE       +
Sbjct: 100 RRLWDSIDTIEDGFAVYDSHQRLVAANEAYRAHFA--GVEVRLGMTLMDLLEVTVGNGLI 157

Query: 366 ---PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
               E  +   W   + S +             +GQ + ++      G  + +  ++T Q
Sbjct: 158 DLGGEAPD--AWCARMASRWDEDPVQPIILRRTSGQWMRLVNRRARDGDMVSLLIDITEQ 215

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + L              ID + +G  +F    R+ L N   R ++      + PG     
Sbjct: 216 MRL-----------RAAIDAIPDGFVLFDRAERLVLCNDRHREIYPRSAPAMQPGARFEE 264

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTML 540
           I           D        +T      + L G  E  L     +       P+   + 
Sbjct: 265 ILRHGLANGQFPDAAGREEEWLTDRLAAFRQLGGAAEQQLDDGRWMRVIEHETPDGGRVG 324

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V++T     + AL     A   A   K++F+ ++S+E+R+P+  I+G  DLL  +   
Sbjct: 325 LGVDITQLKLQQAALETARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET--- 381

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  + E I +S   LL ++NDILD + ++A  + L      L   ++EV   +  
Sbjct: 382 PLTEDQRLFAETIRSSGEALLVIINDILDYSKIEANRLTLYPEPFDLERTIHEVAMLLQP 441

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARD 715
           +     + + +  D  L + FV D  RL Q+ + ++ NA+ F+  G      V L+    
Sbjct: 442 QARAKGLDLLIDFDMFLPTRFVGDPCRLRQVLTNLIGNAVKFTEAGHVLIRVVGLEVEPG 501

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             D   +V++ G  I       VF  F  +      +  G GLGL+I    I +  G V 
Sbjct: 502 RHDLHVTVEDTGIGIAPGNLDHVFGEFNQIDAEATRRFEGTGLGLAITRRLIEMMQGTVW 561

Query: 774 ISSSDEGVTTINCRI 788
           + S     +    R+
Sbjct: 562 VESELGRGSCFGFRL 576


>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1179

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 192/494 (38%), Gaps = 37/494 (7%)

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           ++I D    + + N  F+E+       L            + ++ +  ++   + W+   
Sbjct: 305 VSITDVKGDITYVNDKFIEISGYSADELIGKNH------RMVNSGQHDQEFFRELWQTVA 358

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG---GTIWMFENLTVQVDLETKYNT 431
                  +         NG    V  T  P     G     + M  ++T Q  +E +  +
Sbjct: 359 NGRVWHGQVKN---RAKNGSCYWVEATVVPFMDQDGKPYQYVSMRTDITAQKAMELQVQS 415

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             ++    +D L EGV +   DG     N     +       +  G ++ ++        
Sbjct: 416 ERRLLKSVMDTLGEGVYMLDQDGNCTYMNTEAEDIVGWTIEEVV-GRNLHDLLHVHRPDG 474

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN------AQTMLTFVNV 545
                 +      T       S     +  + ++   +I+  P         ++  F ++
Sbjct: 475 TRVTADECPIRQSTMNKKVYHSEAEYFQHKNGTLFPIAIVASPMIDGDLITGSVAAFQDI 534

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           ++    ER L    E+   A   K  F+  +S+E+R+P+  IIG T+L   +++   +++
Sbjct: 535 SERKFTERELLRAKESAEAASRAKGDFLATMSHEIRTPMNGIIGMTELALDTEM---SAE 591

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +Y+  + +S+  LL ++NDILD + +++G M+L      + +L    ++++A +  + 
Sbjct: 592 QREYLNMVKSSADALLTIINDILDFSKIESGKMELESVEFDVRNLFASAEKTLAIRAAQK 651

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDF 719
            + +    DG +    V D  RL Q+ + +L NA+ FS  G+ + L+        D    
Sbjct: 652 GLELVYDVDGAIPDLLVGDPGRLRQVLTNLLGNAIKFSEHGA-ITLRMKLLMQTSDGLCV 710

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  IP D    +F  F        R   G GLGL+I    +   GG +S+ S 
Sbjct: 711 RIEVADQGIGIPVDKLAHIFEAFTQADTSTTRKYGGTGLGLAISSKLVAAMGGDLSVESQ 770

Query: 778 DEGVTTINC--RIP 789
               +       +P
Sbjct: 771 VGIGSVFGFTTTLP 784



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 98/284 (34%), Gaps = 30/284 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDF--LVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
              +K ++L   ++       +L+   +V   D  GDI + N  +    E  G    + I
Sbjct: 277 RLKVKGQQLERALAEVSNQQHALNEHAIVSITDVKGDITYVNDKF---IEISGYSADELI 333

Query: 238 GESRKL-----FKEEIKKRMISSSALEKNFCETV-STLEHGNNKSYKIVRVL------NS 285
           G++ ++       +E  + +  + A  + +   V +  ++G+    +   V         
Sbjct: 334 GKNHRMVNSGQHDQEFFRELWQTVANGRVWHGQVKNRAKNGSCYWVEATVVPFMDQDGKP 393

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +    +  D++ +  +  Q+     +L      L   + + DQ+    + N    ++   
Sbjct: 394 YQYVSMRTDITAQKAMELQVQSERRLLKSVMDTLGEGVYMLDQDGNCTYMNTEAEDIVGW 453

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
            +  +    +  +LL   R              +  +      SE   + +   NG    
Sbjct: 454 TIEEVVGR-NLHDLLHVHRPDGTRVTADECPIRQSTMNKKVYHSEA--EYFQHKNGTLFP 510

Query: 402 VIVTSNP--RG----GTIWMFENLTVQVDLETKYNTLVKVQGET 439
           + + ++P   G    G++  F++++ +   E +     +     
Sbjct: 511 IAIVASPMIDGDLITGSVAAFQDISERKFTERELLRAKESAEAA 554


>gi|160886838|ref|ZP_02067841.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
 gi|156107249|gb|EDO08994.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
          Length = 936

 Score =  324 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 121/660 (18%), Positives = 260/660 (39%), Gaps = 61/660 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +   E      K+    +    LF  +      +   RD+       N   
Sbjct: 289 WFSSLGNIINICIELRKTKDKVIREQTFLNNLFHFMPMGYIRMSIIRDEN------NKPC 342

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +          + NF E +                
Sbjct: 343 DYRVTDANEVSSTFFGLPLESYIGSLASEKHPDYLQKLNFLEEILDSNSYREKDEYFPRT 402

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 403 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYL 462

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E     
Sbjct: 463 IDLNNKDLEIFGVVNKSDVIGVNFFENPNVPQGIRDRVRNEDLVDFRLNYS--FEQAEGY 520

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y+++ ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 521 YETNRSNAIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 577

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           +   G A      ++ L N    ++ +  +N       + +       + +  D      
Sbjct: 578 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDTLLDEVVGVYTHMHPEDRKRFLD 631

Query: 502 AIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVTDSV 549
                 D +R+  QG + +           +S +V+  +  P  N   ++    ++T+  
Sbjct: 632 FYDEVRDGKRRHFQGEMRIRRPGTKNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELK 691

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++   L+ +Q +Y
Sbjct: 692 ETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETE--ELSERQ-EY 748

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  +  + +
Sbjct: 749 IKIVRENNDLLLQLISDILDLSKIEAGTFEFTSGDVDVNLLCEDIVRSMGMKA-KGEVEL 807

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            + +   +   ++DR R+ Q+ S  ++NAM F+S+GS + +     +G+  F V++ G  
Sbjct: 808 VLDNHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIG 866

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ++    +F RFV         G GLGLSI +S +   GG + + S     +     IP
Sbjct: 867 IEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924


>gi|126659637|ref|ZP_01730767.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619083|gb|EAZ89822.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 1070

 Score =  324 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 130/697 (18%), Positives = 251/697 (36%), Gaps = 80/697 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHIS---VFKVLFDSLDFLVWHRDQAGDILWANISY- 222
           R  +L      L         +S+      +   L D +  LV+ +D  G     N ++ 
Sbjct: 137 RGKALWDATGNLVRMAGSHTDISDRKDEQILLTSLIDCIPDLVFCKDSKGVYKMCNNAFE 196

Query: 223 ----KKNTETEGIVFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
               +   +  G    +       L F+E+ +  M+   +       T     +G  +  
Sbjct: 197 TFAGRDRKDIIGKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWITYP---NGKRRLV 253

Query: 278 KIVRVLNS------FGEAGIAIDVSKEITVNDQLTHTYE---ILHNLTVAIAIFDQNRYL 328
             ++           G  GI+ D++      + +    E   +L N+   +   D    +
Sbjct: 254 DTLKTPFCCPEGKLMGTIGISRDITDRKQKEEAIKKQAERDALLSNIARQLIDQDLTTAV 313

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLPEQ--------LNWKTWKENI 378
            F   S  +  + D +++      ++    L        P          L+   W    
Sbjct: 314 NFILESLGKFTKCDRSYIIRYFPEEKAWSMLHEWCNEYTPSTIHDSQNISLDVFPWFSKQ 373

Query: 379 FSVYKS----------SETHKDTWHLPNGQTLHVIVTSNPRGGTI-------------WM 415
               KS           E   +     N  + +++V     GG               W 
Sbjct: 374 LIEGKSICINRLEDFPPEATAEKEAYQNSLSPNLLVVPMMAGGQTVGYLGIDTNLYQKWT 433

Query: 416 FENL-------------TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
            E++               +   E   N         +D+ +E +       +I L N A
Sbjct: 434 KEDVNLLKLVGELMAIAEARAIAEEAQNESQARFAGILDNANEAIISIDEQQKITLFNHA 493

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              ++    + +        I    +  + +        +        R+ + G  +  +
Sbjct: 494 AEQIFGYISDEVLGQPFNLLIPPRFTDDHYQHIQTFQNTSETARQMGGRRPVFGQRKDGT 553

Query: 523 DSVLEYSIIPLP-NAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           + + E SI  +    +T+ T    ++T+  +AE AL    E    A+  K+ F+  +S+E
Sbjct: 554 EFLAEVSISKIKLRGKTIFTAIIRDITERKQAEEALKRAKEQADAANRAKSEFLASMSHE 613

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  I+GFT +++     SL  +  Q ++ I  S   LL L+NDIL++  ++AG   
Sbjct: 614 LRTPLNAILGFTQVMQRDH--SLKEEHKQNLDIIGRSGEHLLELINDILEMTKIEAGRTT 671

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
           LN +   L  LL+ ++  +  K  E N+++    +  L  ++  D  +L Q+   +L NA
Sbjct: 672 LNKTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNA 731

Query: 699 MDFSSKGSTV-ILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQR 751
           + F+ +G  +  +K ++ + +       F V++ G  I  +    +F  F      R   
Sbjct: 732 IKFTQEGGVILRIKTSQQSPNNQAIILTFEVEDTGPGIAIEEVDQLFEAFGQTETGRNSN 791

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL I   F+ L GG +S+SS     +     I
Sbjct: 792 EGTGLGLPISRKFVELMGGEISVSSILGRGSLFTFTI 828



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 95/291 (32%), Gaps = 20/291 (6%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-S 351
           + ++ + T+ +       ++      I  ++      F +  + E+       L  +  +
Sbjct: 31  VALTMQETLRENEERWQLVVQGTNEGIWDWNLKTDEMFFSPRWKEMLGYGDQELPNHINT 90

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIVTSNPR 409
             +LL    +   +    +    K + +S     +       W L  G+ L     +  R
Sbjct: 91  WKKLLHPQDTERVMKILADHFAKKTDHYSAEFRLKCQDGNYKWILSRGKALWDATGNLVR 150

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
                   +++ + D +    +L       ID + + V      G  K+ N AF +    
Sbjct: 151 --MAGSHTDISDRKDEQILLTSL-------IDCIPDLVFCKDSKGVYKMCNNAFETFAGR 201

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +   +   +         +  + E D + +        ++      G   L+      + 
Sbjct: 202 DRKDIIGKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWITYPNGKRRLVDTLKTPFC 261

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                   T+    ++TD  + E A+ ++ E        +++ + +++ +L
Sbjct: 262 CPEGKLMGTIGISRDITDRKQKEEAIKKQAE--------RDALLSNIARQL 304


>gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1034

 Score =  324 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 101/506 (19%), Positives = 199/506 (39%), Gaps = 32/506 (6%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           V D       +  N+       D      + + ++ E+W           S +EL     
Sbjct: 127 VKDAEARFLHLAENIRDIFWALDPVGRPVYVSPAYEEVWG---------RSREELYRSAA 177

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNPRG-------G 411
            A       + ++     F   +        +    P+G    V + S P G        
Sbjct: 178 GAWLDTVHPDDRSGATEQFDHVRRGARTDREFRIVRPDGAVRWVRLRSFPLGDEAGREPR 237

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              + E++T +   E       +    T ++ + G+A   P+GR    N     + +   
Sbjct: 238 VAGLCEDITERKRAEGNLRESEERFRGTFENAAVGIAHCDPEGRFLRVNQKHCDILRYPR 297

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYS 529
             L  G   R +     R  + +    L    + S+  E++ +   G ++    +V    
Sbjct: 298 EEL-IGLDFRAVTHPDDRTGSGTQFERLMRGEVRSYSLEKRHVCKDGAVKWTVVTVSAQR 356

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                   ++    ++++  R E  L    EA   A+  K+ F+ +VS+ELR+P+  I+G
Sbjct: 357 DPVQGTLHSIGVVEDISERKRLEGELLVAKEAAEAANRAKDEFLANVSHELRTPMNAILG 416

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            T+L+  ++   L   Q Q +  + +++  LL ++ND+LD A ++AG ++L+ +   L  
Sbjct: 417 MTELVLETE---LREDQRQCLATVKSAADNLLGILNDLLDFAKIEAGKLELDPTEFSLRA 473

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           ++ +  +++A + H   + +       +  + V D  RL Q+   ++ NA+ F+  G  V
Sbjct: 474 VVGDTLRALAARAHRAGLELVGDVHPAVPDALVGDPGRLRQVLFNLIGNAIKFTPAGEVV 533

Query: 709 ILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
           +     D  D       F+V++ G  I  +    +F+ F        RR  G GLGL+I 
Sbjct: 534 VGVEPADPSDIGGSAVRFTVRDTGIGIKPEKLDRIFHAFEQEDTSTTRRYGGTGLGLTIS 593

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
              + L GG + + S     +T    
Sbjct: 594 GRLVALMGGAIGVESEPGRGSTFAFT 619



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 96/346 (27%), Gaps = 44/346 (12%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSC--AFLRILSLDGIYSELAET 181
              +             F+L  ++ N         + G+   A    L    +     E 
Sbjct: 61  ATAIGAFIANFALTPPHFELSIKSINAAVALPMFLLVGAMMSALCESLHRTRLRLVAEER 120

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY--------KKNTETEGIVF 233
                 + +  + F  L +++  + W  D  G  ++ + +Y        ++   +    +
Sbjct: 121 ARAATAVKDAEARFLHLAENIRDIFWALDPVGRPVYVSPAYEEVWGRSREELYRSAAGAW 180

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFG 287
              +    +    E    +   +  ++ F         G  +  ++              
Sbjct: 181 LDTVHPDDRSGATEQFDHVRRGARTDREFRIVRP---DGAVRWVRLRSFPLGDEAGREPR 237

Query: 288 EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
            AG+  D+++       L  + E       N  V IA  D        N+   ++     
Sbjct: 238 VAGLCEDITERKRAEGNLRESEERFRGTFENAAVGIAHCDPEGRFLRVNQKHCDILRYPR 297

Query: 344 AFL-------ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
             L        T+P +              E  ++   K ++       +     W    
Sbjct: 298 EELIGLDFRAVTHPDDRTGSGTQFERLMRGEVRSYSLEKRHVC------KDGAVKW---- 347

Query: 397 GQTLHVIVTSNPRGGT---IWMFENLTVQVDLETKYNTLVKVQGET 439
              + V    +P  GT   I + E+++ +  LE +     +     
Sbjct: 348 -TVVTVSAQRDPVQGTLHSIGVVEDISERKRLEGELLVAKEAAEAA 392


>gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 729

 Score =  324 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 132/694 (19%), Positives = 269/694 (38%), Gaps = 89/694 (12%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           GI+ ++++     + +      ++++F++    ++H D+ G I   N   +       + 
Sbjct: 50  GIFEDISDRMKAEEAMRESEKKYRLIFENSPLGIFHFDENGVITHCN---ENIMHILDVT 106

Query: 233 FQKAIG-------ESRKLFKEEIKKRMISSSALEKNFCETV---STLEHGNNKSYKIVRV 282
             + IG       + +K+++         S   E  +  T    +T    +   Y I   
Sbjct: 107 RDQIIGFNMLKDLKDKKMYEAVKAVFQRRSGHYEGKYHSTTGKKATPIKADYSPY-ISED 165

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILH------NLTVA----IAIFDQNR--YLQF 330
               G  GI  D+S  +   + L      L        +T A    I  F +     L  
Sbjct: 166 GELLGGVGIVEDISDRMKAEEALHLDESRLETLVKLNQMTEASLEEIIDFARAEGVRLTE 225

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL--NWKTWKENIFSV------- 381
               ++   + D+  +     +D  +   +  NK  E    +   W E+I          
Sbjct: 226 SKIGYLAFVDEDIGTIQLKSWSDTPMNRCKIKNKKVEYKIEDVGLWGESIRQRRPFINND 285

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF------------------------- 416
           YK     K  +   + + +  +       G I                            
Sbjct: 286 YKKPHPRKSGYPKDHVELIRHMDVPIFEQGKIVALAGVGNKNENYDSSDVRQLTLLMQGM 345

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS--------LWK 468
             +  +   E +               ++ + V    G I   N A           L +
Sbjct: 346 WRIVQRRKTEKELEKSEDKFRTIFASTNDAIFVHDLKGNIMEVNKAACETTGYSRDELLR 405

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   ++ G  +  I         +  G  +F A     DD    ++     +S  ++EY
Sbjct: 406 MKTKDINTGLSMEEIPQRIKEV--KEKGHAIFEATFRREDDTTIPVE-----ISARMIEY 458

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELR 581
           +  P      ++   ++T+  RAE  L +  + L KA+E       +K+ F+ +VS+EL+
Sbjct: 459 NDKPT----ILVVARDITERKRAEEELRKYAQDLSKANEELKSLDKMKDEFLSNVSHELK 514

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT+IIG+T+LL    LG L  +Q    E +  ++  L  LV+ +L L+   AG ++ +
Sbjct: 515 TPLTSIIGYTELLNDGSLGELGEEQKHAEETVMRNTKRLQRLVDSLLYLSRTQAGTVQYD 574

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           + T+ +++L +++ + +  +  E N+ +    +  L     DR +L  +F+ I+ N++ F
Sbjct: 575 FETLNISELTDQIIEDLQIQTEEKNLEMIKKIEPDLPQIKGDRDKLTDMFTNIIDNSIKF 634

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           + KG ++ + A +++     ++K+ G  IP+DM  ++F RF         +  G GLGL 
Sbjct: 635 TPKGGSITIFANKEDEYIHINIKDTGIGIPKDMIDNLFQRFYQIDSSQKRKYGGTGLGLY 694

Query: 760 IVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
           I ++ +  H G + + S      T ++ ++P  E
Sbjct: 695 ITKTIVEAHEGEIWVESEGKGKGTEVHIKLPVAE 728



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 61/166 (36%), Gaps = 16/166 (9%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I +FE+++ ++  E       K      ++   G+  F  +G I   N     +    
Sbjct: 47  GGIGIFEDISDRMKAEEAMRESEKKYRLIFENSPLGIFHFDENGVITHCNENIMHILDVT 106

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDSVLEY 528
            +++     ++++         +   ++   A+        E K    T +  +    +Y
Sbjct: 107 RDQIIGFNMLKDL--------KDKKMYEAVKAVFQRRSGHYEGKYHSTTGKKATPIKADY 158

Query: 529 SIIPLPNAQ---TMLTFVNVTDSVRAERALTEKN---EALRKADEI 568
           S     + +    +    +++D ++AE AL       E L K +++
Sbjct: 159 SPYISEDGELLGGVGIVEDISDRMKAEEALHLDESRLETLVKLNQM 204



 Score = 42.6 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 71/175 (40%), Gaps = 29/175 (16%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G  GI  D+S  +   + +  + +    I  N  + I  FD+N  +   N + + + ++ 
Sbjct: 47  GGIGIFEDISDRMKAEEAMRESEKKYRLIFENSPLGIFHFDENGVITHCNENIMHILDV- 105

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QT 399
                   + D+++ F    N L +  + K ++       + S  ++  +H   G     
Sbjct: 106 --------TRDQIIGF----NMLKDLKDKKMYEAVKAVFQRRSGHYEGKYHSTTGKKATP 153

Query: 400 LHVIVTS--NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGET---IDHLSEG 446
           +    +   +  G   G + + E+++ ++  E   + L + + ET   ++ ++E 
Sbjct: 154 IKADYSPYISEDGELLGGVGIVEDISDRMKAEEALH-LDESRLETLVKLNQMTEA 207


>gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 778

 Score =  324 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 121/629 (19%), Positives = 235/629 (37%), Gaps = 57/629 (9%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKK----------NTETEGIVFQKAIGESRKLFKE 246
            L  S    V+     G  L+ N ++ +                I  Q  +  +++   +
Sbjct: 21  DLLLSAPIGVFSSTPEGRYLYVNPAWVRIFGYDSPEDVLVSITDIGTQVYVDPAQREEFK 80

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQL 305
            + +        E  F     ++   +  +  +           G   D+++       L
Sbjct: 81  RVLEAHGEVVNFESKFKRRDGSIVWVSRNARAVRDAQGRISHYQGFTTDITERKQSEAAL 140

Query: 306 THTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                +L +L      AIAI D   ++   N+SF  L+  +         ND + + +  
Sbjct: 141 QKQKAMLEHLFDSSPEAIAIVDNQGFVLQINKSFTYLFGYEWEDAHGKQINDLVSQGM-- 198

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNP---RG---GT 412
                    ++    +   +   + T  +T       +G  L V++   P    G   G 
Sbjct: 199 ---------YRDEAGHYSDLVFKNGTIVETETVRCTKDGTPLDVVLIGYPILIDGRIIGA 249

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
             ++ ++T +   E       +      +    G+ +    G I   N     +     N
Sbjct: 250 YAIYRDITDRKLAEKSLQESEERFKALHNASFGGITIHDK-GIILDCNQGLSGITGYSVN 308

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L     +  IA    +        ++ A     ++       G    L    LE   IP
Sbjct: 309 ELIGMDGLLLIAEKSRKMV----MKNILAGYEKPYEAVGLRKNGQEYPLR---LEARNIP 361

Query: 533 LPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                     F + T+    E  L +  +A + A++ K+ F+ ++S+E+R+PL  ++G  
Sbjct: 362 YKGRMVRSVEFRDDTERKLVEAELIKARDAAQAANQAKSEFLANMSHEIRTPLNGVMGLM 421

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
              +  +   L+ +Q + V     SS  L  L+ D+LD++ ++AG M +      L +L 
Sbjct: 422 ---QLLQTTLLDDEQREIVSMAIRSSDRLARLLTDLLDISKIEAGKMDVVEEDFSLRELC 478

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + V +  A    + N+ ++ + D  L    +    RL QI   ++ N++ F+ +G  V L
Sbjct: 479 DSVTELFAVNADKKNVSLEYVIDPDLPPILIGGVARLRQILFNLVGNSLKFTDQG-RVRL 537

Query: 711 K----AARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
           +    A   NG+    FSV + G  IPED  + +F  F     ++  + +G GLGL+IV 
Sbjct: 538 EMAPIAPAKNGELRLLFSVYDTGIGIPEDKLRDLFKPFAQVEGSYTRKYQGAGLGLAIVR 597

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + L  GH+ + S     T ++  +P K
Sbjct: 598 RLVELMRGHIYMESVLGKGTAVHVVLPFK 626



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 101/322 (31%), Gaps = 26/322 (8%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                ++L +  + +          + N ++V ++  D          D L+       +
Sbjct: 16  FQDVDDLLLSAPIGVFSSTPEGRYLYVNPAWVRIFGYDS-------PEDVLVSITDIGTQ 68

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTIWMFE---- 417
           +      +   + +   +      +  +   +G  + V   +       G I  ++    
Sbjct: 69  VYVDPAQREEFKRVLEAHGEVVNFESKFKRRDGSIVWVSRNARAVRDAQGRISHYQGFTT 128

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +   E        +     D   E +A+    G +   N +F  L+   E   + G
Sbjct: 129 DITERKQSEAALQKQKAMLEHLFDSSPEAIAIVDNQGFVLQINKSFTYLFG-YEWEDAHG 187

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNA 536
             I ++ +            DL     T  + E          L   ++ Y I I     
Sbjct: 188 KQINDLVSQGMYRDEAGHYSDLVFKNGTIVETETVRCTKDGTPLDVVLIGYPILIDGRII 247

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY------ELRSPLTNIIGF 590
                + ++TD   AE++L E  E  +       SF     +      +    L+ I G+
Sbjct: 248 GAYAIYRDITDRKLAEKSLQESEERFKALHNA--SFGGITIHDKGIILDCNQGLSGITGY 305

Query: 591 T--DLLKTSKLGSLNSKQSQYV 610
           +  +L+    L  +  K  + V
Sbjct: 306 SVNELIGMDGLLLIAEKSRKMV 327


>gi|315645559|ref|ZP_07898683.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315279037|gb|EFU42347.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 639

 Score =  324 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 104/495 (21%), Positives = 203/495 (41%), Gaps = 34/495 (6%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLP 366
              +  +  + IA+     +    N +  +++      L   P++D +    + +  KL 
Sbjct: 13  FEHVYKSAPIGIALVTVEGHWISVNPAACKMFGYTEEELMAQPASDYVYSNCINNKEKLL 72

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT----IWMFENLTVQ 422
             L+      +     +   +HKD   +    ++HV +  + +  T    I    ++T  
Sbjct: 73  HSLD----DTSSTIAVEKQFSHKDGNQIW--ASMHVSLVRDDKENTPLFFISQIVDITDS 126

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              E +    ++       +  + +  F  +G+I   N     L   +   L        
Sbjct: 127 KVAEQRLQESIERYTSLKKYNHDAIISFNLEGKIINGNQMAEQLTGFKIPEL-------- 178

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQTML 540
           I    SR   E +   + ++       E K + G +       +E   ++ P+      +
Sbjct: 179 IGTKISRLIGERNLSRILSSAADYVAVE-KGING-IHHRDGHTVEVLATLAPIVIHNQNV 236

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F  +   +  ++ L  + EA  K ++ K+ F+  +S+E+R+P+  +IG TDL+  ++  
Sbjct: 237 GFYIIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE-- 294

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q  YV+ I  S T LLN++NDILD + +++G  +L   T  L   L+E    I  
Sbjct: 295 -LDEEQRDYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRIALSETMNMILP 353

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           K  E NI +      ++      D  +L Q+   +LSNA+ F+  G+  + ++     G+
Sbjct: 354 KALEKNIEVTTSVASEVPDQVHGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCLNHEGN 413

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                FSV + G  +PE+    +F  F    H    +  G GLGL+I +  + L GG + 
Sbjct: 414 PPLIQFSVVDTGIGVPEEKVAHLFEPFYQVDHYMTRKVEGTGLGLAICKKLVKLMGGDIW 473

Query: 774 ISSSDEG-VTTINCR 787
              +  G  +     
Sbjct: 474 YERNLNGSGSVFAFT 488


>gi|209548975|ref|YP_002280892.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534731|gb|ACI54666.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 510

 Score =  324 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 193/511 (37%), Gaps = 40/511 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                IL NL   I + D    +   N   +E+  +    +    + D          +L
Sbjct: 3   HSFESILENLPQGIVLLDPANRVTAFNSRTLEILGLPDGAIGKGMNID----------RL 52

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
           P   + +           +   H   + L +G+ + +    +  GG I  +E+++  + +
Sbjct: 53  PGTADCRA---AACRQSTTGRPHTSQFALSDGRMVSMTCAPSKEGGWILSYEDISTLIRV 109

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E             + ++  G+ +F    ++ L NPA+  ++   +    PGT + +I A
Sbjct: 110 EDSLTEQHHRFDAALSNMPHGLCMFDSTKKLILCNPAYARMYNLPDLLTQPGTPLVDILA 169

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              R  N       +  ++             + L+   V++ +  P+ N   + T  +V
Sbjct: 170 YRGREGNGPADTATYFDVVFEATARGAVASQNIVLVDGRVIKITHNPMQNGGYVATHEDV 229

Query: 546 T-------------------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           T                         +  R  R L       R  +E++  FV   S+E 
Sbjct: 230 TKTVRLTEELRRHHDQLETTVQSRTAEVERQARELERMLAQERNINELQRQFVAMASHEF 289

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I      L   +        S  V+ I AS   +++L+  IL    +D G + +
Sbjct: 290 RTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIRASVNRIVDLMESILSAGRLDTGKIDI 349

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +Y    L  L+    +  +T       R  +  DG      AD + + Q+F+ +LSNA+ 
Sbjct: 350 SYDACALRSLIRSCCERQSTIA--KTHRFVLDIDGLPEFIDADPRTVAQVFTNLLSNAVK 407

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           ++   S + + A  + G+   S+ ++G  I  +    +F R+          G G+GL++
Sbjct: 408 YAPGTSEIRVTAWEETGNVKVSISDDGVGIDPEDVPRLFQRYFRAGTSTGIAGTGIGLNL 467

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           V+  + LH G + + S+    +T    +P K
Sbjct: 468 VKQIVELHHGSIEVRSARGCGSTFTVTLPIK 498



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 97/342 (28%), Gaps = 26/342 (7%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
             F+ + ++L   +   D A  +   N    +          K +   R     + +   
Sbjct: 3   HSFESILENLPQGIVLLDPANRVTAFNSRTLEILGLPDGAIGKGMNIDRLPGTADCRAAA 62

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLN-SFGEAGIAIDVSK----EITVNDQLTH 307
              S   +      +     + +   +    +   G      D+S     E ++ +Q   
Sbjct: 63  CRQSTTGRPHTSQFALS---DGRMVSMTCAPSKEGGWILSYEDISTLIRVEDSLTEQHHR 119

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               L N+   + +FD  + L   N ++  ++ +            ++L +       P 
Sbjct: 120 FDAALSNMPHGLCMFDSTKKLILCNPAYARMYNLPDLLTQPGTPLVDILAYRGREGNGP- 178

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             +  T+ + +F              L +G+ + +       GG +   E++T  V L  
Sbjct: 179 -ADTATYFDVVFEATARGAVASQNIVLVDGRVIKITHNPMQNGGYVATHEDVTKTVRLTE 237

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +          T+              R        R L    E  L+   +I  +    
Sbjct: 238 ELRRHHDQLETTVQS------------RTAEVERQAREL----ERMLAQERNINELQRQF 281

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
               +      L      +    RK      E LSD V +  
Sbjct: 282 VAMASHEFRTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIR 323


>gi|319898572|ref|YP_004158665.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
 gi|319402536|emb|CBI76079.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
          Length = 769

 Score =  324 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 108/502 (21%), Positives = 213/502 (42%), Gaps = 43/502 (8%)

Query: 324 QNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            N    + +R+  E+        L +      +++        P+  N+    + + S  
Sbjct: 277 ANGR-VYWSRAMYEMLGYAPQNALLSISQITAIID--------PKDANFFEIAQELMSGA 327

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           K             G  + + + +          + +  +++ Q     +         +
Sbjct: 328 KKHIDINVPMRHAEGYYVWMRIRAEVTDEEEPHLVGISFDISEQRQFAEQTAQADLRIRD 387

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I+++SE   ++   GR+ +SN  F       +  L  G     + A      +E     
Sbjct: 388 AIENISESFVLWDSAGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKV 447

Query: 499 LFAAIITSFD----------DERKSLQGTLELLSDSVLE---------------YSIIPL 533
             A  +TS            +ER++  G L  +   + E               +S I  
Sbjct: 448 DEAGNLTSIRQTADGYWLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQE 507

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                       T+  +  ++L E+ E    A++ K+ F+ ++S+ELR+PL  I+GF+++
Sbjct: 508 LKRARGNAQQRATEVEKLNKSLQEEKEKAESANKAKSEFLANMSHELRTPLNAILGFSEI 567

Query: 594 LKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +  S  G L S++  +Y+  I  S T LL L+NDILD++ ++AG   L+   I L  +++
Sbjct: 568 MLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDCKNINLEPIIS 627

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E  +++  +     I +    + KL + V D + + QIF  ++SNA+ F+  G ++ ++A
Sbjct: 628 ETIRTLTPQAQAKKISLTTNIEPKLHADV-DCRAMKQIFLNLISNAVKFTPSGGSIDIRA 686

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
            + N + IFS+K+ G  IP++  K +   F    +       G GLGL+I  S + LH G
Sbjct: 687 FQKNNNLIFSIKDTGVGIPKEAIKKLGKPFEQVENQFTKTHPGSGLGLAISRSLLELHKG 746

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            + I+S +   T +   +P ++
Sbjct: 747 KLEITSKEAKGTIVTITMPIQQ 768



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 86/283 (30%), Gaps = 31/283 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           I +   + T +  +    +++ +      D+ +      G + W+   Y +         
Sbjct: 244 IRARNTDLTSEKIQNRTDMAMMRGRCGLWDWNM----ANGRVYWSRAMY-EMLGYAPQNA 298

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-----HGNNKSYKIVRVLNSFGE 288
             +I +   +   +       +  L     + +          G     +I   +    E
Sbjct: 299 LLSISQITAIIDPKDANFFEIAQELMSGAKKHIDINVPMRHAEGYYVWMRIRAEVTDEEE 358

Query: 289 ---AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
               GI+ D+S++    +Q         + + N++ +  ++D    L   N  F E   I
Sbjct: 359 PHLVGISFDISEQRQFAEQTAQADLRIRDAIENISESFVLWDSAGRLVMSNSKFCEYAAI 418

Query: 342 DLAFLATNPSNDELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
               L +      +    R A ++ P +++              +          +G  L
Sbjct: 419 PKQMLQSGIERATVEAMSRPAISEYPLKVD-------------EAGNLTSIRQTADGYWL 465

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +       GG + +  +++     + K+    +     I  L
Sbjct: 466 KINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQEL 508


>gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 885

 Score =  324 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 131/650 (20%), Positives = 249/650 (38%), Gaps = 65/650 (10%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQK 235
                  L+   +  + LF      +      G  L  N ++ +       +   + F +
Sbjct: 12  LQQLETALAESQNRLRDLFHLAPIGIAEISTEGYFLEVNTAFCRWVGYSQADLINLDFNE 71

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--------YKIVRVLNSFG 287
                      +  +++I+    E    +      H +            ++    N   
Sbjct: 72  ITHPEDGDICRQKFEQLITQQIDEYTLEKR---YRHRDGHWVYGIVTCYLRLDVKGNPLC 128

Query: 288 EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF--HNRSFVELWEI 341
                ID+++    E  + ++  +   +L N+   +  F ++  L F   NR++     +
Sbjct: 129 AIAQIIDITQGKRSEQEIREKEEYLRLLLDNIPQQV--FWKDTNLVFRGCNRNWAIAAGL 186

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-----PN 396
           D +      ++ +L      A         + ++E    V +S     +         P 
Sbjct: 187 DSSESVVGKTDFDLFADAEIA---------EFYREKDRQVLESRTPEMNVVAPKQKLGPG 237

Query: 397 GQTLHVIVTSNP----RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           G+ + + V+  P    +G   G + + E++T   +++ K      +   +ID   + V  
Sbjct: 238 GRRIWLDVSRIPMLDSQGNVLGILGVLEDITESKEIDEKLR----LTQFSIDKSRDYVLF 293

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD- 508
              +GR    N A   +    +  L     + +I    S         DL      +F+ 
Sbjct: 294 SDINGRFFYVNEAACQILGYSKEELLT-MEVGDIDPLASPGGWSISWDDLRDQGSFTFES 352

Query: 509 -DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               K+ Q     ++ S LEY+              ++ D  + E AL +  EA   A  
Sbjct: 353 THYTKTGQAIAVEITLSHLEYN----HREYGCAVVRDIRDRKQTEIALQQAKEAAETASR 408

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS---KQSQYVEYISASSTILLNLV 624
            K+ F+  +S+ELR+PL  I+GFT L++     + N       +++E I  S   LL L+
Sbjct: 409 AKSEFLARMSHELRTPLNAILGFTQLMERELYHNPNIPLFDHKEHLEIIGRSGEHLLELI 468

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           ND+L+++ ++AG + LN +   L  LLN +++ +        + +    D ++ +   AD
Sbjct: 469 NDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDQIPTYIYAD 528

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV-ILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVF 739
            Q+L Q    +L NA+ F+ KG  +  +K  +   D G   F V++ G  I       +F
Sbjct: 529 EQKLRQCLINLLGNAIKFTVKGGVILRVKLGKFNHDFGQLWFEVEDTGPGIDPSEMDLLF 588

Query: 740 NRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F      R  ++G GLGLSI + FI L GG + +SS     T     I
Sbjct: 589 EPFSQTETGRNSQQGTGLGLSITQKFIGLMGGEIQVSSERGKGTIFRFDI 638



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 68/529 (12%), Positives = 161/529 (30%), Gaps = 55/529 (10%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
             L +K+ +  + L+E     ++   L             +    E+     + +   Q 
Sbjct: 6   RQLHQKLQQLETALAESQ---NRLRDLFHLAPIGIAEISTEGYFLEVNTAFCRWVGYSQA 62

Query: 109 DTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI 168
           D   L F             +  E+L  +     +   T        +G          +
Sbjct: 63  DLINLDFNEITHPEDGDICRQKFEQLITQ----QIDEYTLEKRYRHRDGHWVYGIVTCYL 118

Query: 169 L-SLDG-------IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
              + G          ++ +     +++       ++L D++   V+ +D        N 
Sbjct: 119 RLDVKGNPLCAIAQIIDITQGKRSEQEIREKEEYLRLLLDNIPQQVFWKDTNLVFRGCNR 178

Query: 221 SYKKNTETEGIVFQK--------AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
           ++      +              A  E  + ++E+ ++ + S +               G
Sbjct: 179 NWAIAAGLDSSESVVGKTDFDLFADAEIAEFYREKDRQVLESRTPEMNVVAPKQKLGPGG 238

Query: 273 NNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
                 + R+       N  G  G+  D+++   ++++L  T   +      +   D N 
Sbjct: 239 RRIWLDVSRIPMLDSQGNVLGILGVLEDITESKEIDEKLRLTQFSIDKSRDYVLFSDING 298

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
              + N +  ++       L T     E+ +    A+     ++W   ++     ++S+ 
Sbjct: 299 RFFYVNEAACQILGYSKEELLT----MEVGDIDPLASPGGWSISWDDLRDQGSFTFESTH 354

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             K    +    TL  +  ++   G   +  ++  +   E       +         SE 
Sbjct: 355 YTKTGQAIAVEITLSHLEYNHREYGCA-VVRDIRDRKQTEIALQQAKEAAETASRAKSEF 413

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +A    + R  L   A     +  E  L    +I          ++  +  ++       
Sbjct: 414 LARMSHELRTPL--NAILGFTQLMERELYHNPNI--------PLFDHKEHLEIIG----- 458

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
                +S +  LEL++D VLE S I         T  N+   + + R +
Sbjct: 459 -----RSGEHLLELIND-VLEMSKIEAGRVSLNPTNFNLISLLNSLREM 501


>gi|126658537|ref|ZP_01729684.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
 gi|126620124|gb|EAZ90846.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
          Length = 3557

 Score =  324 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 129/674 (19%), Positives = 257/674 (38%), Gaps = 81/674 (12%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE- 229
            + G   ++ +     ++L     + + + +S   +V+ +D  G I+  N ++ +      
Sbjct: 2681 MAGACVDITQRKQTEQELQESNIILRSVIESTPDVVFVKDLQGRIVVGNSTFAEVFNQPI 2740

Query: 230  ----GIVFQKAIGESRKLFKEEIKKRMISSSALEK-----NFCETVSTLEHGNNKSYKIV 280
                G    +        + +E  +R+I     E         + + T     +  Y   
Sbjct: 2741 ETLLGKNNDERWSPDIAAYLKENDQRIIQLGRSETFEETLPHPQGMRTYLTTKSPWYD-- 2798

Query: 281  RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW- 339
                  G  GIA D+S        L  + + L  L                N S+  L+ 
Sbjct: 2799 PQGQIIGVIGIARDISDRKAAEAALKRSEQDLRTL---------------FNNSYDALFI 2843

Query: 340  -EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE------NIFSVYKSSETHKDTW 392
             ++D  FL  N    ELL   R         ++   +        IF+     ++ +  W
Sbjct: 2844 HDLDGRFLDINDRVVELLGTSRENILARSVADFAAEEAPIDQLAEIFNNVAQGKSLRFEW 2903

Query: 393  ---HLPNGQTL--HVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                  +  T    V +     G     +    +++ +   E       +      +  +
Sbjct: 2904 KGKRFDDNSTFDAEVALRKVSLGEKDVILAGVRDISDRKAAEKALRQSEEYNRTLFETST 2963

Query: 445  EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
             G+ +   DG +   NPA+ ++           T+      T    Y E++   L +   
Sbjct: 2964 IGLVLCRMDGTLVDVNPAYAAILGRTVEETLNLTYWEITPET----YAEAEAAQLESMAK 3019

Query: 505  T---SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRAERAL----- 555
            T   +F+ E     G+L  ++ S L   I+     Q + +   +++   +AE AL     
Sbjct: 3020 TGRYAFEKEYIRKDGSLVPVALSGL---IVERNGEQYIWSCVEDISQRKQAEVALKEANN 3076

Query: 556  -------------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                          +  E   +A++ K++F+ ++S+ELR+PL  I+G+  +L+ S    L
Sbjct: 3077 QLEQRVLERTAQLQQAKELAEEANQAKSAFLANMSHELRTPLNGIMGYAQILQRSP--QL 3134

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +S     ++ I    + LL L+ DILD++ ++AG M+L      LN  L  V +    K 
Sbjct: 3135 SSDHKSNIQVIYQCGSHLLTLIEDILDISKIEAGRMELYCQEFPLNSFLQGVVEICRIKA 3194

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR--DN 716
             + ++         L + +  D++RL Q+   +L NA+ F+S GS    V   ++R   N
Sbjct: 3195 EQKSLTFTYERPSSLPTVINTDQKRLRQVLLNLLGNAIKFTSLGSIKFRVSFTSSRTNHN 3254

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            G   F +++ G  I  +    +F  F    +   +  G GLGL+I +  + + G  +++ 
Sbjct: 3255 GFLQFEIEDTGVGISAEQLDRIFLPFEQVGSLSQKAEGTGLGLAISQKLLQMMGTQLTVE 3314

Query: 776  SSDEGVTTINCRIP 789
            S+    +  +  +P
Sbjct: 3315 STLGVGSIFSFILP 3328



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 84/580 (14%), Positives = 196/580 (33%), Gaps = 73/580 (12%)

Query: 50   SLAKKVNETYSFLSEICDQLSK----YHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
            +L +   E    + E  ++L++      ++         ++DG     ++  +  +   +
Sbjct: 1904 ALQQLNEELEQRVYERTEELARSEQDLRAIFNNVYDALFIYDGDGTLLDVNHRALELHGV 1963

Query: 106  PQTDTDLLSFENWLKFHHYIKL-SKATEKLRK------EGQSFDLVAETQNDCAIKIEGR 158
             +      +  ++   ++ ++L  +  E+L++      E +   L   T  D  I +   
Sbjct: 1964 TREQLLAATMNDFRTSNNALELIPEYLERLQQGETVQFEWEGRRLGDRTLFDAEISMRSL 2023

Query: 159  VSGSCAF--LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
              G+     + +  +    +   E       L       + + D+    V+ +D+    L
Sbjct: 2024 ALGNRPVILVGVRDISQKQAAFRERQQAQIALQESQRFLQTVLDTFPLNVFWKDRQSRFL 2083

Query: 217  WANISYKKNTETEGIVFQKAIGESR----------KLFKEEIKKRMISSSALEKNFCETV 266
              N ++      E    ++ IG++            L++ + ++ M S  A        +
Sbjct: 2084 GCNRTF--MLGAELASPEEIIGKTDYDMPWASTEADLYRADDRQVMDSGQAKLGIIEPQL 2141

Query: 267  STLEHGNNKSYKIVRVLNS------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA-- 318
            +    G+    +  ++          G  G   D+S       QL    + L ++     
Sbjct: 2142 TA--DGSTIWLETNKLPLRNLEGEVIGVLGTYQDISDRKRAEAQLAQQEQFLRSIYEGAE 2199

Query: 319  IAIF------DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            + IF      D        N +  ++  +    +      + L E +            +
Sbjct: 2200 MPIFVVEVLPDNQFRYAGWNLASEKMSGLRAVDVLGKHPVEVLGEEIG-----------Q 2248

Query: 373  TWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPRG-------GTIWMFENLTVQV 423
             + +N     ++ +  +   HL  PNG  +  + T NP           +    +++ + 
Sbjct: 2249 HFCQNYCRCLETGKAIQYEEHLDLPNG-VVWTLTTLNPLKNSEGNIYRIVGTAVDISDRK 2307

Query: 424  DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            + E        +    +D + + V       R    NPAF + ++     +   T +   
Sbjct: 2308 EAEQALEESRNMFKLVLDTIPQRVFWKDRQSRFLGCNPAFANDYQLTHADIVGKTDLELP 2367

Query: 484  AATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----- 537
             A     Y   D   +       ++++   +L G      +  +  S IPL N Q     
Sbjct: 2368 WAKWGDLYRADDARVMNTRTPQLNYEEPTNNLAGE-----NIWIRSSKIPLTNTQGEVVG 2422

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             +  + +VT+  +AE+AL E  E LR A +  N  +  ++
Sbjct: 2423 VLGCYDDVTERKQAEQALEESEERLRLALKSANQGLYDLN 2462



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 74/549 (13%), Positives = 166/549 (30%), Gaps = 33/549 (6%)

Query: 63   SEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFH 122
             ++     +Y +L   +       D +     +  +  +   +   D     + N L   
Sbjct: 1400 QKLQASERRYATLTELSPTGIFRTDPQGNCCYVNTRWCEMAGLTPEDAQGQGWVNALHPD 1459

Query: 123  HYIKLSKATEKLRKEGQ-SF--DLVAETQNDCAIKIEGRVSG-SCAFLRILSLDGIYSEL 178
               ++ +  ++  +  Q  F  D   +  +   I +  + +  +     +    G  +++
Sbjct: 1460 DRERMMQEWDQAAQNRQMPFNTDCRFQKPDGTVIWLVVQATEETDHQGNVTGYVGSITDI 1519

Query: 179  AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ---- 234
            ++   K   L      F+  FD     +      G  L  N S  +              
Sbjct: 1520 SDRKQKEIALQESEERFRQAFDYASIGMGLVSPEGQWLKVNSSLCEIIGYSEAELLNTTF 1579

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSFGEAGIA 292
            + I     L  +    R + +  +     E     + G+       +  V +  GE    
Sbjct: 1580 QDITHPDDLDIDLNFVRQMLAGEIVTYKMEKRYIHKQGDIIWILLNVSLVRDHQGEPLYF 1639

Query: 293  I----DVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            I    D+S        L     +   +     + + +   +      N +F  +    LA
Sbjct: 1640 ISQIQDISDRKAAEQALQDSEQYVRTLFETSPIGLLLCRMDGNFVELNPAFAAIIGYSLA 1699

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKE-NIFSVYKSSETHKDTWHLPNGQTLHVI 403
                        +    +    EQ+  K  +E   +  Y+    HK+ + +P   +  +I
Sbjct: 1700 ETQQL----SYWQITPESYSEQEQVMLKQLEETGYYGPYEKEYIHKEGYLVPVRLSGRII 1755

Query: 404  VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
               +         E++T +   E +           +   +E ++ F PDG I   N AF
Sbjct: 1756 ER-HGEKFIWSSIEDITDRKTAEKQLQDSETRYRGIVQDQTEFISRFLPDGTILFVNEAF 1814

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +    + +  G + + +     R         L      +  + R  + G +     
Sbjct: 1815 CRYFGVNASDI-IGQNYQPVIYEPDRERVMQQVSTLSPDNPITIIENRIIVNGEIRWTQW 1873

Query: 524  SVLEYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                 + I   +    L +     ++     AE AL + NE L +    +   +     +
Sbjct: 1874 ----VNRILFDDTGNFLEYQSVGRDIQARKEAEIALQQLNEELEQRVYERTEELARSEQD 1929

Query: 580  LRSPLTNII 588
            LR+   N+ 
Sbjct: 1930 LRAIFNNVY 1938



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 70/461 (15%), Positives = 149/461 (32%), Gaps = 44/461 (9%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
            +   +AE T K +     +S  K   D    +V   D  G I +AN  +    E      
Sbjct: 1136 LEQRVAERTKKLQISQQELSDLKYSIDQS-AIVAITDTQGKITYANDHF---CEVFQYNR 1191

Query: 234  QKAIGESRKLFKE-----EIKKRMISSSALEKNFCETV-STLEHGNNKSYKIVRVL---- 283
            ++ IG++  L           + + ++    K +   + +  + G++     V V     
Sbjct: 1192 EELIGQTHHLVNSGYHSPAFFQELWTTIGQGKVWKGEIKNQAKDGSHYWVDTVIVPFLDE 1251

Query: 284  --NSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                F    I  +++     EI + +          +  V IA+          N+ F +
Sbjct: 1252 AGKPFQYMAIRFEITQRKQAEIALQESEARFRVFFEHAAVGIALASMTGQFITVNQKFCD 1311

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            + +   + L             +      +  + KT+ + + S   ++ + +  +   +G
Sbjct: 1312 ILDYQESELRGK--------TFQEITYPDDLPDTKTYAQQLVSGEVNAYSVEKRYVKRDG 1363

Query: 398  QTLHV--------IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
            Q              T  P+   + + E++  +   E K     +      +    G+  
Sbjct: 1364 QITWSNTTASLVRDATGTPQ-YFVGVIEDIEQRKIAEQKLQASERRYATLTELSPTGIFR 1422

Query: 450  FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFD 508
              P G     N  +  +             +  +      R   E D       +  + D
Sbjct: 1423 TDPQGNCCYVNTRWCEMAGLTPEDAQGQGWVNALHPDDRERMMQEWDQAAQNRQMPFNTD 1482

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
               +   GT+  L     E +         + +  +++D  + E AL E  E  R+A + 
Sbjct: 1483 CRFQKPDGTVIWLVVQATEETDHQGNVTGYVGSITDISDRKQKEIALQESEERFRQAFDY 1542

Query: 569  KNSFVQHVSYE-----LRSPLTNIIGFTDL-LKTSKLGSLN 603
             +  +  VS E     + S L  IIG+++  L  +    + 
Sbjct: 1543 ASIGMGLVSPEGQWLKVNSSLCEIIGYSEAELLNTTFQDIT 1583



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 58/431 (13%), Positives = 132/431 (30%), Gaps = 44/431 (10%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-- 225
            I  + G   ++++     + L    ++FK++ D++   V+ +D+    L  N ++  +  
Sbjct: 2293 IYRIVGTAVDISDRKEAEQALEESRNMFKLVLDTIPQRVFWKDRQSRFLGCNPAFANDYQ 2352

Query: 226  ---TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                +  G    +               R++++   + N+ E  + L  G N   +  ++
Sbjct: 2353 LTHADIVGKTDLELPWAKWGDLYRADDARVMNTRTPQLNYEEPTNNL-AGENIWIRSSKI 2411

Query: 283  LNS------FGEAGIAIDVSKEITVNDQLTHTYEILH-------------NLTVAIAIFD 323
              +       G  G   DV++       L  + E L              NLT   AI  
Sbjct: 2412 PLTNTQGEVVGVLGCYDDVTERKQAEQALEESEERLRLALKSANQGLYDLNLTTGKAIVS 2471

Query: 324  QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
                       +  +   D A      +N + +E L   +       +  +     + Y+
Sbjct: 2472 AE---------YATMLGYDPATFEE--TNGKWIERLHPDDVERVTNVYLNYVAGTITDYR 2520

Query: 384  SSETHKDT-----WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
                 +       W L  G+ +    +  P    +    +++ +  +E +     +    
Sbjct: 2521 VEFRQQTQQGKWKWILSVGKIVAWDESGQPL-RMLGTHTDISDRKSIEEQLIKREEQLRA 2579

Query: 439  TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             +D    G   +    +    +     L+       +                   D  +
Sbjct: 2580 ALDASETGTFRWYIATKQLEWDDNLNRLFGLPLGATAHELDEFITLVHPDDRQTVIDACN 2639

Query: 499  LFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                    F++E + +   G++  L D    +              V++T   + E+ L 
Sbjct: 2640 RSLQEGVDFEEEFRVVWPDGSIHWLFDKGKLFCDQQGNPCYMAGACVDITQRKQTEQELQ 2699

Query: 557  EKNEALRKADE 567
            E N  LR   E
Sbjct: 2700 ESNIILRSVIE 2710



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/425 (12%), Positives = 126/425 (29%), Gaps = 59/425 (13%)

Query: 54   KVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL 113
            +  +T   L E    L    S++     +  V D +     ++G         Q    LL
Sbjct: 2690 QRKQTEQELQESNIIL---RSVIESTPDVVFVKDLQGRI--VVGNSTFAEVFNQPIETLL 2744

Query: 114  SF---ENWLKFHHYIKL---SKATEKLRKEGQSFDLVA---------ETQNDCAIKIEGR 158
                 E W        L    +   +L    ++F+             T        +G+
Sbjct: 2745 GKNNDERW-SPDIAAYLKENDQRIIQL-GRSETFEETLPHPQGMRTYLTTKSPWYDPQGQ 2802

Query: 159  VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
            + G         + GI  ++++       L       + LF++    ++  D  G  L  
Sbjct: 2803 IIG---------VIGIARDISDRKAAEAALKRSEQDLRTLFNNSYDALFIHDLDGRFLDI 2853

Query: 219  NISYKKNTET--EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            N    +   T  E I+ +     + +    +    + ++ A  K+           +N +
Sbjct: 2854 NDRVVELLGTSRENILARSVADFAAEEAPIDQLAEIFNNVAQGKSLRFEWKGKRFDDNST 2913

Query: 277  YK----IVRVLNSFGEAGIA--IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
            +     + +V     +  +A   D+S        L  + E    +    T+ + +   + 
Sbjct: 2914 FDAEVALRKVSLGEKDVILAGVRDISDRKAAEKALRQSEEYNRTLFETSTIGLVLCRMDG 2973

Query: 327  YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
             L   N ++  +            + +E L  L      PE        +          
Sbjct: 2974 TLVDVNPAYAAILG---------RTVEETLN-LTYWEITPETYAEAEAAQLESMAKTGRY 3023

Query: 387  THKDTWHLPNGQTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTL-VKVQGETI 440
              +  +   +G  + V     IV  N         E+++ +   E        +++   +
Sbjct: 3024 AFEKEYIRKDGSLVPVALSGLIVERNGEQYIWSCVEDISQRKQAEVALKEANNQLEQRVL 3083

Query: 441  DHLSE 445
            +  ++
Sbjct: 3084 ERTAQ 3088


>gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1434

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 127/723 (17%), Positives = 253/723 (34%), Gaps = 58/723 (8%)

Query: 106 PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLV--AETQNDCAIKIEGRVSGSC 163
           P        F  W+      ++    +      +  DL    +T N     ++ +     
Sbjct: 235 PGRRIPYDEFLAWIHPEDRDRVLAMHQMCLTTFEPGDLTFLVQTPNGAIRHVQLKAG--- 291

Query: 164 AFLRILS-----LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
             +R  +       GI  ++ +  L+   L    + ++  F+ +   V +    G  +  
Sbjct: 292 -VIRNQAGEAEQCIGILKDVTDRMLQDAALHESEANYRTTFEQVAVGVANVSPDGMFVRV 350

Query: 219 NISYKKNTETEGIVFQKA----IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           N         E     +     I     L  +      + +  +     E     + G+ 
Sbjct: 351 NKGLCDLLGYESDELLQLDFQQITHPDDLNADLTLVAQVLNGEIPSYRMEKRYIRKDGDV 410

Query: 275 KS--YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN-----------LTVAIAI 321
                 +  V +  G     I V + I    +     +  +N              ++ I
Sbjct: 411 VWANLNVSMVRDREGAPKHFISVVESIQERKEAEAALQTYNNQIEKLSLVASKTQHSVVI 470

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
            D    +++ N +F  L E  L             + L+  N  P+ +N+          
Sbjct: 471 TDARGRIEWVNEAFTRLTEYTLDDCLGKIP----GDLLQGPNTDPDTVNF---IHMALRE 523

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMF----ENLTVQVDLETKYNTLVK 434
            +S +T    +   +G    + +  +P     G +  F     ++T +   E       K
Sbjct: 524 NRSIDTEIINYS-KSGDEYWICLKIDPVFNDNGELTNFIATQVDVTDRKRAEETAARSQK 582

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                +     G+     DGRI+ +N  F  +     +    G               + 
Sbjct: 583 QFEALLKADILGIMTCRYDGRIEQANDEFLRIVGYTRDEFERGELDWRSLTPERWLEKDQ 642

Query: 495 DGWDLFA--AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
              +          ++ E +   G +  +    L  ++I       +   ++ T   R E
Sbjct: 643 AAIEQLRKTGAARPWEKEYRRKDGIVIPV---YLGVTLIEDNTDLCLCFVLDATAQKRTE 699

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L     +   A + K+ F+  +S+ELR+PL  +IG T+LL  +    L+++Q+Q+V  
Sbjct: 700 ASLEGARRSAEAASKAKSDFLASMSHELRTPLNGVIGMTELLANT---DLDARQTQFVRA 756

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
             +S   LL L+ND+LD + ++AG ++L+     L  LL+++   +  ++   +I++   
Sbjct: 757 CKSSGESLLALINDVLDFSKIEAGRLELDEHEFDLMSLLDDLMNVMGLRVSGKDIQMLYR 816

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727
            D         D  RL Q+   ++ NA+ F+ +G   +    L+   D     F+VK+ G
Sbjct: 817 VDHPHTLLLRGDSHRLRQVLVNLIGNAIKFTERGKISLRVEPLELTEDRAKLRFAVKDTG 876

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP D    +F  F        R   G GLGL I +S +   GG + + S     +   
Sbjct: 877 IGIPADRLDRLFKTFTQVDSSITRTFGGTGLGLCICKSLVEAMGGEMGVDSIQGVGSEFY 936

Query: 786 CRI 788
             +
Sbjct: 937 FTL 939


>gi|295086635|emb|CBK68158.1| GAF sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 926

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 124/663 (18%), Positives = 262/663 (39%), Gaps = 67/663 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +   E      K+    +    LF  +      +   RD+       N   
Sbjct: 279 WFSSLGNIINICIELRKTKDKVIREQTFLNNLFHFMPMGYIRMSIIRDEN------NKPC 332

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +          + NF E +                
Sbjct: 333 DYRVTDANEVSSTFFGLPLESYIGSLASEKHPDYLQKLNFLEEILDSNSYREKDEYFPRT 392

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 393 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYL 452

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E     
Sbjct: 453 IDLNNKDLEIFGVVNKSDVIGVNFFENPNVPQGIRDRVRNEDLVDFRLNYS--FEQAGGY 510

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y++S ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 511 YETSRSNVIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 567

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCSRYYNESDGW--D 498
           +   G A      ++ L N    ++ +  +N        +  + A  S+ + E      D
Sbjct: 568 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLD 621

Query: 499 LFAAIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVT 546
            +  +    D +R+  QG + +           +S +V+  +  P  N   ++    ++T
Sbjct: 622 FYDGVR---DGKRRHFQGEMRIRRPGTKNEWNWVSSNVMVTNYKPEENEIEIIGINYDIT 678

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++     +++
Sbjct: 679 ELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL---AER 735

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  E  
Sbjct: 736 QEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKE-E 794

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +       +   ++DR R+ Q+ S  ++NAM F+S+GS + +     +G+  F V++ 
Sbjct: 795 VELVFDDHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDT 853

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +F RFV         G GLGLSI +S +   GG + + S     +    
Sbjct: 854 GIGIEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWF 911

Query: 787 RIP 789
            IP
Sbjct: 912 TIP 914


>gi|332711422|ref|ZP_08431354.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332349971|gb|EGJ29579.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1443

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 106/519 (20%), Positives = 200/519 (38%), Gaps = 36/519 (6%)

Query: 297  KEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +     + +  T  +L          I + D+N  +  +N  F +LW+       TN   
Sbjct: 828  ERSVAQEDVLRTNAMLKAQQEAAIDGILVVDENFRVVSYNHRFSDLWQTPEQLFETN-DI 886

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH-----VIVTSN 407
             ELL+ + S  K PE+       +  +       T+ D   + +G+        V+ +  
Sbjct: 887  QELLKQVSSQLKHPEEF----LAQVDYLQAHPKTTNYDELLIKDGRIFDFYSAPVLTSGG 942

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSL 466
               G I+   ++T +   E K     +   + ++   + + +   + G I  +N     +
Sbjct: 943  DYYGRIFCNRDITERKLSEAKLRQAEQKYRKLVESAGDAILMADAETGIILEANQMAEQM 1002

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                   +      + I     + Y++S    + A  +  F +E + L      +   V 
Sbjct: 1003 LGRRRAEIIGLHQSQIIPRERFKAYSQSFQQHVEAGGV--FQEELELLHQVGTTVPVEVS 1060

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              ++           F +++D  +AE+AL +       A+  K+ FV ++S+ELR+PL  
Sbjct: 1061 ATTLELQGKTVVQGIFRDISDRKQAEQALKQAKVDAEVANRAKSEFVANMSHELRTPLNG 1120

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            I+G+  +L+     +L++ Q + +  I  S   LL L+NDILDL+ ++A  M+L+     
Sbjct: 1121 ILGYAQILQEEP--NLSATQKEQLSIIQQSGQHLLTLLNDILDLSKIEAIKMELDVRDFQ 1178

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
                L  + + +     + N+  +      L  FV  D  RL Q+   +L NA+ F+  G
Sbjct: 1179 FPKFLEGIVEIVVISAKQKNLSFRYEFLSPLPEFVKGDEIRLRQVLMNLLGNAVKFTDTG 1238

Query: 706  ST-------------VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-G 749
                           V        G     F + + G  IP      +F  F    +   
Sbjct: 1239 GVTFKVGYLGCSELNVDRSLTEKQGTQKMRFVIADTGIGIPPKQLAEIFLPFHQVGNTDR 1298

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGLSI +    L G  + + S+    +     +
Sbjct: 1299 QVNGTGLGLSISKRLAELMGSELKVKSTVGQGSIFWLDL 1337



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 79/206 (38%), Gaps = 13/206 (6%)

Query: 419 LTVQVDLETKYNTL-VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRLS 475
           +T + +   +   L V       ++  EG+    PDG    +NPA   ++  +  E  ++
Sbjct: 346 ITSERNSAAELLLLSVAKYRSIFENAVEGICQTTPDGSYISANPALARIYGYQSPEELVA 405

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             T I +      +   +         +++ F+ +     G++  +S +V          
Sbjct: 406 SVTDIAHQLYVDPQRRADLLLQLQEDGVVSGFEAQIYQKDGSIIWISKNVRAIRDSSNFL 465

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                T   +T+   A+ AL  +NE L    + + + ++ ++ +L           ++L+
Sbjct: 466 LYYEATVEEITERKHAQDALLYQNERLEYQFQERTATLRQLNRQL---------IAEVLE 516

Query: 596 TSKLGS-LNSKQSQYVEYISASSTIL 620
             ++   L   + ++   I A++  L
Sbjct: 517 HKRIEDALRESEERFALAIQANTNGL 542


>gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1784

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 121/737 (16%), Positives = 260/737 (35%), Gaps = 73/737 (9%)

Query: 94   EIIGQLHQRIDIPQ--TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC 151
            ++   L Q +           L           +  ++    L+ +G  F        + 
Sbjct: 559  QVEALLPQELGERHVLERQTFLREGR----DRSMANARHVRALKADGNEF------IAEI 608

Query: 152  AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            A+ I               +     ++ +     +K+ +    F+ L  ++   V +R +
Sbjct: 609  ALSILPTAFDGQ-----RQVAASIRDMTQKLAVEQKIRDSEQRFRGLVTNIPGAV-YRTR 662

Query: 212  AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS---------SALEKNF 262
             GD+ +         E  G    + I   ++ F   I +    +         +  E   
Sbjct: 663  IGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRPTCHLHIDRALAQQETFE 722

Query: 263  CETVSTLEHGNNKSYK------IVRVLNSFGEAGIAIDVSKE----ITVNDQLTHTYEIL 312
             E       G+ +                    G   D+++     + +         I 
Sbjct: 723  VEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESKLALVQLEQSRQQMTNIT 782

Query: 313  HNLTVAIAIFD----QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             ++   +         +R   F + + +++  +    L +N   D + E +    +    
Sbjct: 783  ESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRDDLMSN--FDIIAERIFDEERPDVV 840

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIW--MFENLTVQ 422
                   E+     +     +  +  PNG    +   ++      G   W     ++T +
Sbjct: 841  RALSGQSEDRLQWIR-----EFRYRHPNGSIRWMEAGASGHLGEEGAITWNGYVMDITQR 895

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              +E +            D  + G+      G I   N  F +      N L     I  
Sbjct: 896  KTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCADMALSRNHLRNTA-IFE 954

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---- 538
            + +   +   ++   +L    I  +  ER  ++ +   L    +  ++  L +AQ     
Sbjct: 955  VLSEQDQPIAKAQFQELVEGKIDHYRGERSFIRPSGAPL---WMTVNVSALLDAQGQFES 1011

Query: 539  -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +++ V++T+       L    E    A + K  F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   L+ KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++   
Sbjct: 1072 E---LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128

Query: 658  IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
             + K     I +       +    + D  RL Q+   +++NA+ F+ +G  +    +++ 
Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
              D+    FSV+++G  + E     +F  F        R   G GLGL+I +  + L GG
Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248

Query: 771  HVSISSSDEGVTTINCR 787
             + + S     +T    
Sbjct: 1249 KIGVESQFGHGSTFYFT 1265



 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 56/418 (13%), Positives = 127/418 (30%), Gaps = 61/418 (14%)

Query: 164 AFLRILSLDGIYSELAET--TLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWAN 219
           A   I++L   ++++AE     +   L +  + F  L D +    ++   D  G +    
Sbjct: 363 AVSEIVTLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQL---- 418

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL---------- 269
                          K +G S  L K + ++   ++   EKN+  T   L          
Sbjct: 419 -------AQVSEGVTKVLGISPDLLKRKYQRLFSANPLNEKNWQYTDLALKGQNVPSHQV 471

Query: 270 ----EHGNNKSYKIV-RVLNSFGEAGIAIDV--SKEITVNDQLTHTYEILHNLTVAIAIF 322
               + G+ +   +  + L S     +++++  +           +  +L     A+ I 
Sbjct: 472 EMLDDQGHLRRLDVFMQPLMSDTGELMSVEMLFTDVTEQFSAAVWSNAVLEAAPEAMLIV 531

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D+   + F N   ++L+  +   +        L + L   + L  Q   +  ++   +  
Sbjct: 532 DELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMANA 591

Query: 383 KSSETHKDTWHLPNGQTL--HVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKV 435
           +     K      +G      + ++  P     +        ++T ++ +E K     + 
Sbjct: 592 RHVRALK-----ADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               + ++   V               +R+             +I  I    +  + E +
Sbjct: 647 FRGLVTNIPGAV---------------YRTRIGDVWFMEYISDNIAEITGYAASQFIE-N 690

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNAQTMLTFVNVTDSVRAE 552
               FA++I   D     L     L      E    I   +            S   E
Sbjct: 691 RQRTFASLILEEDRPTCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEE 748


>gi|237719843|ref|ZP_04550324.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451112|gb|EEO56903.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 926

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 124/663 (18%), Positives = 262/663 (39%), Gaps = 67/663 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +   E      K+    +    LF  +      +   RD+       N   
Sbjct: 279 WFSSLGNIINICIELRKTKDKVIREQTFLNNLFHFMPMGYIRMSIIRDEN------NKPC 332

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----------EHG 272
                    V     G   + +   +          + NF E +                
Sbjct: 333 DYRVTDANEVSSTFFGLPLESYIGSLASEKHPDYLQKLNFLEEILDSNSYREKDEYFPRT 392

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
              ++ ++         G+ +D +  +  N  L  + +    I  N+   + I+D++ YL
Sbjct: 393 ERYTHWVIYSPGKDEIVGLFLDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYL 452

Query: 329 QFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N   +E++        I + F         + + +R+ + +  +LN+    E     
Sbjct: 453 IDLNNKDLEIFGVVNKSDVIGVNFFENPNVPQGIRDRVRNEDLVDFRLNYS--FEQAGGY 510

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y++S ++    +    +        +   G I +  + T ++D   +            D
Sbjct: 511 YETSRSNVIELYSKVSKLYDNEGNFS---GYILISIDNTERIDAMNRIRDFENFFLMISD 567

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCSRYYNESDGW--D 498
           +   G A      ++ L N    ++ +  +N        +  + A  S+ + E      D
Sbjct: 568 YAKVGYA------KLNLLNRKGYAIKQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLD 621

Query: 499 LFAAIITSFDDERKSLQGTLEL-----------LSDSVLEYSIIPLPNAQTMLTF-VNVT 546
            +  +    D +R+  QG + +           +S +V+  +  P  N   ++    ++T
Sbjct: 622 FYDGVR---DGKRRHFQGEMRIRRPGTKNEWNWVSSNVMVTNYKPEENEIEIIGINYDIT 678

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E  L +  +     D +K++F+ ++S+E+R+PL  I+GF+DLL  ++     +++
Sbjct: 679 ELKETEAELIQARDKAEMMDRLKSAFLANMSHEIRTPLNAIVGFSDLLVETEEL---AER 735

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ +  ++ +LL L++DILDL+ ++AG  +     + +N L  ++ +S+  K  E  
Sbjct: 736 QEYIKIVRENNELLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKE-E 794

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +       +   ++DR R+ Q+ S  ++NAM F+S+GS + +     +G+  F V++ 
Sbjct: 795 VELVFDGHLPVCHVISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDT 853

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +F RFV         G GLGLSI +S +   GG + + S     +    
Sbjct: 854 GIGIEKEQLPHIFERFVKLNSFVH--GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWF 911

Query: 787 RIP 789
            IP
Sbjct: 912 TIP 914


>gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 747

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 97/507 (19%), Positives = 198/507 (39%), Gaps = 30/507 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNP 350
           +E  + +        +      I + D++      N +   + E      + +  +  +P
Sbjct: 247 REEDLKESENKFRSYVDYAPFWIFVIDRHGNYVDVNPTASSMTEYTMNELLSMNIVDLHP 306

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           S+     + +      E ++  +    +  + K+ +           +   V        
Sbjct: 307 SDA----YEQVNLVFNELVDTGSISTELPFITKNGDR----------RIWIVEAVKLNED 352

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             +    ++T +   E K     +     I+H ++ + V   DG I   N          
Sbjct: 353 RFLGFTTDITERKIEEDKVKESEQRFRTLIEHAADAIIVHDFDGNILYVNELACESLGYI 412

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           +++L                + +              +   K   GT+       +E  +
Sbjct: 413 KDKLLSMNVTDFDPYVDVDVFRDKYWNKTSPDTSYLVETYHKRSDGTIY-----PVEVRL 467

Query: 531 IPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             +        +    ++T   + E  L         A++ K+  + +VS+ELR+PLT I
Sbjct: 468 TRIDLGGKPAILGFVRDITMQKQTEDNLVYAKMEAYAANQAKSDMIANVSHELRTPLTTI 527

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF+D+L   K G LN  Q +Y+  I      L N++N++LDL+ +D+G + ++   I +
Sbjct: 528 IGFSDVLLKGKAGDLNDSQEKYLSKIHDRGQQLHNIINEMLDLSKIDSGELDVSCEYIAV 587

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           ++L   +K ++     +  + I+   + ++    AD  +L  I   +L N++ F+  GS 
Sbjct: 588 HELFENLKSNVYPIASKKGLTIETKINQRVDYIYADELKLKHILYNLLYNSVKFTDDGSI 647

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
            I     +N ++ FSV ++G  IP +    +F  F         +  G GLGL++V+  +
Sbjct: 648 TIKLDLDENNNYKFSVVDSGIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGLGLTLVKRLV 707

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            LHGG++ + S     +     IPS E
Sbjct: 708 ELHGGNIWVESEVGTGSKFTFTIPSDE 734



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 84/264 (31%), Gaps = 25/264 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E   + + L    + F+   D   F ++  D+ G+ +  N +    TE            
Sbjct: 243 ELKKREEDLKESENKFRSYVDYAPFWIFVIDRHGNYVDVNPTASSMTEYTMNELLSM--N 300

Query: 240 SRKLFKEEIKKRM----ISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSFGEAGIAID 294
              L   +  +++               E     ++G+ + + +  V LN     G   D
Sbjct: 301 IVDLHPSDAYEQVNLVFNELVDTGSISTELPFITKNGDRRIWIVEAVKLNEDRFLGFTTD 360

Query: 295 VS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           ++    +E  V +       ++ +   AI + D +  + + N    E     L ++    
Sbjct: 361 ITERKIEEDKVKESEQRFRTLIEHAADAIIVHDFDGNILYVNELACE----SLGYIKDKL 416

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNP 408
            +  + +F        +    K W +         ET+       +G      V +T   
Sbjct: 417 LSMNVTDF--DPYVDVDVFRDKYWNKTSPDTSYLVETYHK---RSDGTIYPVEVRLTRID 471

Query: 409 RGG---TIWMFENLTVQVDLETKY 429
            GG    +    ++T+Q   E   
Sbjct: 472 LGGKPAILGFVRDITMQKQTEDNL 495


>gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 982

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 106/519 (20%), Positives = 207/519 (39%), Gaps = 47/519 (9%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           I  D    +    +L  + E    L+      I I D+   +Q  N  F +L+      L
Sbjct: 199 ITRDDRSLLLQQARLAESEERNRLLSEVALEGIVIHDR-GIVQDMNARFAKLFGYPREEL 257

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-- 404
                   L              +  +  + +   +  SE ++      +G    V +  
Sbjct: 258 EGINVISLLF----------HPDDIGSMIDKMSRAH--SEPYQVRGVKKDGTVFDVEIEG 305

Query: 405 ---TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSN 460
                  +   +    ++T +   E        +     +H +    +  P  G I  +N
Sbjct: 306 YNLQHGDKSVRVVSVRDITERRRAEEALRQSEALFRNLFEHHAAVKLIIDPVSGAIVDAN 365

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A  S +     +L     IR+I        N     +L + +  + + ER         
Sbjct: 366 NAAVSFYGWSREQLRAMN-IRDI--------NMLSPEELVSELENAKNMERIHFFFRHRR 416

Query: 521 LSDSVLEYSI----IPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             DSV +  +    I +   + + +   +VT+  RAE  L    E    A+  K+ F+ +
Sbjct: 417 ADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANRAKSEFLAN 476

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  +IG T LL  + L     +Q +Y E +  S+  LL +++DILD + ++A
Sbjct: 477 MSHEIRTPMNGVIGMTGLLLETGLA---DEQRRYAEIVRTSAASLLQVIDDILDFSKIEA 533

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKI 694
           G +++      L  LL+++ +S+A K +E  +    +   ++  F + D  RL Q+   +
Sbjct: 534 GRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNL 593

Query: 695 LSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
             NA+ F+ +G   V + +    GD     F+V++ G  IP +  + +F +F        
Sbjct: 594 AGNALKFTHQGEISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQADASIT 653

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +  G GLGL+I +  + + GG + ++S     +     
Sbjct: 654 RKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSEFWFT 692


>gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
          Length = 755

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 197/505 (39%), Gaps = 39/505 (7%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             E+  +    I + D++  +   N ++  +       L    +N      +  +   P 
Sbjct: 7   LREVYWHSLDGIVVADKDTVILDVNPAYEAVTGYSRDELIGRKTN------IVRSGLTPP 60

Query: 368 QLNWKTWKENIFS---VYKSSETHKDT--WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           ++    W +       V +    HK+   W+     T  ++         + +  ++T +
Sbjct: 61  EVFRDMWTQLGRQGKWVGEVINRHKNGNLWYSFLSIT-RIVDEGGSVVAYVGIARDITQR 119

Query: 423 VDLETKYNT-LVKVQGE-------------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             +E +    L ++Q                +D + E + +    G   ++N     +  
Sbjct: 120 KAMEQQLRQNLAEIQSARELAQAQATRLTALLDSVGEAIIMVDTLGICVVANHQAGGMLG 179

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
               ++  G  +  + A   R    S      A       +   ++  T E       E+
Sbjct: 180 LPAEQI-VGKSVHELHALALRSLGVSAFQWQPAPNGGPPIEPETNVIETREQRPRVFHEF 238

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +         +L  + V   +  E  L          D +K  F+  VS+ELR+P+T+I 
Sbjct: 239 AAPVTDTEGHVLGRIYVYRDITKETEL----------DRMKTEFIATVSHELRTPMTSIK 288

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   L+     G L  +  + +     ++  L+ L+NDILD++ ++AG M++  + +   
Sbjct: 289 GALGLVLGGAAGDLPPEARELLTIARNNTDRLIRLINDILDISRIEAGKMEIRRAPLSPA 348

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D++    + +     + NI +       L   +AD  RL Q+   ++SNA+ FS +GS V
Sbjct: 349 DVVRRAVEEMNAFARQRNITLTTDVPEGLARVMADADRLHQVLDNLISNAIKFSPQGSEV 408

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
           +++A        F V + G  IP D    +F RF    +    +  G GLGL+I ++ + 
Sbjct: 409 LIRARETGDGVRFDVIDRGPGIPADQTGLIFERFYRVDNAASRKTGGTGLGLTICKAIVE 468

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG + + S+    +T +  IP +
Sbjct: 469 EHGGQIWVESALGEGSTFSFTIPVE 493



 Score = 44.9 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 81/254 (31%), Gaps = 40/254 (15%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRK-----LFKEEIKKRMISSSALEKNF 262
             D+   IL  N +Y+  T   G    + IG         L   E+ + M +    +  +
Sbjct: 20  VADKDTVILDVNPAYEAVT---GYSRDELIGRKTNIVRSGLTPPEVFRDMWTQLGRQGKW 76

Query: 263 CETVSTLEHGNNKSYK---IVRVLNSFGEA----GIAIDVSKEITVNDQLT--------- 306
              V       N  Y    I R+++  G      GIA D+++   +  QL          
Sbjct: 77  VGEVINRHKNGNLWYSFLSITRIVDEGGSVVAYVGIARDITQRKAMEQQLRQNLAEIQSA 136

Query: 307 ---------HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
                        +L ++  AI + D        N     +  +    +     ++    
Sbjct: 137 RELAQAQATRLTALLDSVGEAIIMVDTLGICVVANHQAGGMLGLPAEQIVGKSVHELHAL 196

Query: 358 FLRSANKLPEQ----LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
            LRS      Q     N     E   +V ++ E     +H        V  T     G I
Sbjct: 197 ALRSLGVSAFQWQPAPNGGPPIEPETNVIETREQRPRVFHEF---AAPVTDTEGHVLGRI 253

Query: 414 WMFENLTVQVDLET 427
           +++ ++T + +L+ 
Sbjct: 254 YVYRDITKETELDR 267


>gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1230

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 117/599 (19%), Positives = 226/599 (37%), Gaps = 42/599 (7%)

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           W   +     + N + +  +  EG   Q+      K+ +       + S   E+N   T 
Sbjct: 372 WQTRR----SFVNPASRLLSHLEGCS-QEPRKPPAKITQGWEPWFQLVSRIFEENQQYTR 426

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
              E  N +   +V       +               +      +L ++  AI   D+  
Sbjct: 427 HLAEQ-NRRLDNLVARRTERLK-------ETTERREREYALLRSLLDSIPEAIIFKDKEG 478

Query: 327 YLQFHNRSFVELWEIDLAFL----ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
                N+S   +     + +    +   +++E    +R+        + +   E     Y
Sbjct: 479 KYLGCNKSAERMLGYTESEMIGQDSQTMTSNEQSMRIRAE-------DERVLSERTPLRY 531

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +          L +   L          G I ++ ++T + +   +     +     +D 
Sbjct: 532 QEKVELAGKPVLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDA 591

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSR----YYNESDGW 497
           + +G+  +  D    + NPA+ S+   + N        I  +     R     Y E    
Sbjct: 592 VEDGLWDWYLDSEQIICNPAYYSMLGYKSNEFPALVSTIDELVHPDDRIRVQEYREQYLA 651

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           D   A    F    KS      L    V+E++    P  + + T  ++T     E AL E
Sbjct: 652 DPIGAYDVEFRMRGKSGMYHWVLSRGRVVEFTSDNQP-KRMVGTHKDITRHKSNEVALLE 710

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             +    A+  K+ F+ ++S+E+R+P+  IIG   L   ++   L  +Q+ Y++    S+
Sbjct: 711 AKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQ---LTPQQADYLDKAGFSA 767

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL ++NDILD + ++AG ++L      L+ +L+      A K  E  + + + +    
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTA 827

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIP 731
           G  +  D  RL Q+   +LSNA+ F+  G  + L               F V++ G  I 
Sbjct: 828 GLILEGDPLRLGQVLINMLSNAVKFTQSGE-IELGCEDVGERDHRITLKFWVRDTGIGIS 886

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++  +S+F+ F        R   G GLGLSI +  +++ GG + + S     +T +  I
Sbjct: 887 KEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVGSTFSFTI 945



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 91/292 (31%), Gaps = 26/292 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+ +L    +E        ++     ++ + L DS+   +  +D+ G  L  N S ++  
Sbjct: 434 RLDNLVARRTE--RLKETTERREREYALLRSLLDSIPEAIIFKDKEGKYLGCNKSAERML 491

Query: 227 ETEGIVFQKAIGESRKLFKE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
              G    + IG+  +          I+       +              G       ++
Sbjct: 492 ---GYTESEMIGQDSQTMTSNEQSMRIRAEDERVLSERTPLRYQEKVELAGKPVLLDTLK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +          G   +  DV++E    +QL  + E  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIIC 608

Query: 332 NRSFVELWEI-DLAFLATNPSNDELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           N ++  +       F A   + DEL+   + +R      + L       ++    +    
Sbjct: 609 NPAYYSMLGYKSNEFPALVSTIDELVHPDDRIRVQEYREQYLADPIGAYDVEFRMRGKSG 668

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               W L  G+ +     + P+   +   +++T     E       +     
Sbjct: 669 MYH-WVLSRGRVVEFTSDNQPK-RMVGTHKDITRHKSNEVALLEAKQDAESA 718


>gi|256829208|ref|YP_003157936.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578384|gb|ACU89520.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1079

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 146/784 (18%), Positives = 296/784 (37%), Gaps = 87/784 (11%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP-EIIG--QLHQR 102
           R+R  +            +    + + H ++  N       D    TP E++G       
Sbjct: 188 RERQKMDAMREMLMDRSLDAIVVVDQNHRIIEANRRFA---DMLGYTPAEVLGLRTWDYE 244

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGS 162
            ++ +     L F ++ + +   +        RK+G  FD+   T       I+GR S  
Sbjct: 245 ANMTEGMIKEL-FSDFSQVNSVFETRHR----RKDGSIFDVEVTTAGA---SIDGR-SCV 295

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
            AF R         ++       ++L      F+ LF+         D  G  L AN +Y
Sbjct: 296 LAFSR---------DITTRKEAERQLRQSEKHFRALFELSRDGFILADAEGRFLDANKAY 346

Query: 223 KKNTETEGIVFQKAIGESRKLFKEE----IKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
              T    +   +A+G+   L  E+     +  + +      +         H +   + 
Sbjct: 347 CDMTGY-SLPELRALGDFYALTPEKWHDWQRDEIWTRLFKSGDTGVYRKEYIHKDGHVFP 405

Query: 279 I----VRVLNSFGEAGIA----IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
           +      V +  G    A     D+S+ +   +++    +++      I + D    +++
Sbjct: 406 VELRDFAVHDDHGVVRYAWGIVRDISERVRTEERMRSLMQMVEQSPACIVMTDPQGNIEY 465

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW-----KTWKENIFSVYKSS 385
            N  F EL     +F      N  +L     + +  + L       + W+    + +K  
Sbjct: 466 VNPKFTELSGY--SFDEARGQNPRILGSGYKSREEYQDLWRTIESGRQWRGEFRNRHKDG 523

Query: 386 ETHKDTWHL-----PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             + ++  +     P+G+T H +           + E++T +   E +         + +
Sbjct: 524 SLYWESALIAPILDPDGRTTHYVA----------IKEDITKRRHTEEELRKRDINFKKIV 573

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D L + V+    D R +  N  + S         SPG  I N   T +    E       
Sbjct: 574 DILPQLVSYIDKDLRYRFVNATYSS-------FFSPGNLIGN---TVAEVIGEKAFEATR 623

Query: 501 AAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAER 553
             I   F  +      TL    + +  ++  +IP  ++  ++        ++T   R E 
Sbjct: 624 GHIEQVFQGKTVHYGATLTYPEMGERFVDVYLIPDYSSHGVVDGYYAILNDLTHLKRIED 683

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L    +    A+++K+ F+ ++S+E+R+PL  I+G   L++ S   +L+++Q + +   
Sbjct: 684 SLRLAKDEAEAANKLKSEFLANMSHEIRTPLNGILGMLQLMQGS---NLDAEQQECLHTA 740

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS  L  L++DILD++ ++A  +        + D+   + +     + E  I      
Sbjct: 741 IKSSERLTRLLSDILDISKIEADRLIFREHAFDIMDVEKALTELFGQAVKEAGIAYDFRV 800

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK----AARDNGDFIFSVKNNG 727
           D  L    + D  RL+QI   ++ N++ F+ KG   V +      A      +F V ++G
Sbjct: 801 DPGLPKQVLGDEARLVQILFNLVGNSLKFADKGYVSVDITPLPFTAGAPLRLLFCVTDSG 860

Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + E   + +F  F+ +      + +GVGLGL+IV   +   GG + + S     T + 
Sbjct: 861 LGMSEQTQRDIFEPFIQSDGSYTRRHQGVGLGLTIVRKLVQRMGGSLCLDSVSGQGTAVY 920

Query: 786 CRIP 789
             +P
Sbjct: 921 VSLP 924



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 10/199 (5%)

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
           +      K     ++         L VI  S             T+ ++ + +   +  +
Sbjct: 142 QEYREAMKEVPFMEEAQFRRVADALFVIANSLSEKAY-----QQTMLLEEKRERQKMDAM 196

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +   +D   + + V   + RI  +N  F  +       +  G    +  A  +    +  
Sbjct: 197 REMLMDRSLDAIVVVDQNHRIIEANRRFADMLGYTPAEVL-GLRTWDYEANMTEGMIKEL 255

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             D F+ + + F+   +   G++  +  +    SI     +  +    ++T    AER L
Sbjct: 256 FSD-FSQVNSVFETRHRRKDGSIFDVEVTTAGASID--GRSCVLAFSRDITTRKEAERQL 312

Query: 556 TEKNEALRKADEI-KNSFV 573
            +  +  R   E+ ++ F+
Sbjct: 313 RQSEKHFRALFELSRDGFI 331


>gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 982

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 106/519 (20%), Positives = 207/519 (39%), Gaps = 47/519 (9%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           I  D    +    +L  + E    L+      I I D+   +Q  N  F +L+      L
Sbjct: 199 ITRDDRSLLLQQARLAESEERNRLLSEVALEGIVIHDR-GIVQDMNARFAKLFGYPREEL 257

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-- 404
                   L              +  +  + +   +  SE ++      +G    V +  
Sbjct: 258 EGINVISLLF----------HPDDIGSMIDKMSRAH--SEPYQVRGVKKDGTVFDVEIEG 305

Query: 405 ---TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSN 460
                  +   +    ++T +   E        +     +H +    +  P  G I  +N
Sbjct: 306 YNLQHGDKSVRVVSVRDITERRRAEEALRQSEALFRNLFEHHAAVKLIIDPVSGAIVDAN 365

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A  S +     +L     IR+I        N     +L + +  + + ER         
Sbjct: 366 NAAVSFYGWSREQLRAMN-IRDI--------NMLSPEELVSELENTKNMERIHFFFRHRR 416

Query: 521 LSDSVLEYSI----IPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             DSV +  +    I +   + + +   +VT+  RAE  L    E    A+  K+ F+ +
Sbjct: 417 ADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANRAKSEFLAN 476

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  +IG T LL  + L     +Q +Y E +  S+  LL +++DILD + ++A
Sbjct: 477 MSHEIRTPMNGVIGMTGLLLETGLA---DEQRRYAEIVRTSAASLLQVIDDILDFSKIEA 533

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKI 694
           G +++      L  LL+++ +S+A K +E  +    +   ++  F + D  RL Q+   +
Sbjct: 534 GRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNL 593

Query: 695 LSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
             NA+ F+ +G   V + +    GD     F+V++ G  IP +  + +F +F        
Sbjct: 594 AGNALKFTHQGEISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQADASIT 653

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +  G GLGL+I +  + + GG + ++S     +     
Sbjct: 654 RKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSEFWFT 692


>gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 892

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 163/391 (41%), Gaps = 21/391 (5%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT---------E 470
           +       +   +  +Q   ++  S  +     +G I L NPA   L             
Sbjct: 366 SEVKQRTQEIADMNMLQQSILNSASYSIIATDTNGLITLFNPASEKLLGYKAQDVIGIKN 425

Query: 471 ENRLSPGTHIRNIAATCSRYYNES--DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                    I   A   S   N+    G+++F    T+ + +               +  
Sbjct: 426 PGIFHLKEEIIKKAKLLSAELNKPVTPGFEVFILKATATEPDINQWTYISSTGEQIQVNL 485

Query: 529 SIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           S+  L N +      +    ++T+ +  E+AL    E   +A + K+ F+ ++S+E+R+P
Sbjct: 486 SVTSLLNNEGDTVGYLGIAYDLTEQIDHEQALGHSKELAEQASQAKSEFLANMSHEIRTP 545

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   LL+      LN K  +Y++    S+  L  ++NDILD + ++AG + L + 
Sbjct: 546 MNGILGTLQLLQEQ---PLNEKSKEYLKKSLYSTRALTTIINDILDFSKIEAGKLSLEHK 602

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
                +L++ ++  +  +  + NI +K + D +   +V D  RL Q+F  ++SNA+ F+S
Sbjct: 603 PFDFFELIHHLESDLGVQATDKNIYLKFVIDIEHKHWVGDPVRLRQVFLNLISNAIKFTS 662

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
           +G   +     D       + + G  I E     +F RF        R   G GLGL I 
Sbjct: 663 QGGVTVTFRLTDESRICCCISDTGIGISEQAIDRLFERFEQAEQSTTREYGGTGLGLPIT 722

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +S I L  G + ++S     +     +P K+
Sbjct: 723 KSLIGLMNGEIKVTSQLGSGSQFYVYLPLKQ 753


>gi|322418617|ref|YP_004197840.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125004|gb|ADW12564.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1224

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 101/559 (18%), Positives = 204/559 (36%), Gaps = 37/559 (6%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAID--VSKEITVNDQLTHT 308
           +   +A    F   V  +     +   + ++  +  G    A +  + +     +     
Sbjct: 307 VRRLTAPLLTFIRHVEGISDQERELEPVAIQTGDEIGTLARAFNRMIQELRRQKESAREL 366

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-LATNPSNDELLEFLRSANKLPE 367
              +    V + + D++  +++ N +F ++        L  NP        L  +   P 
Sbjct: 367 RLAIDQAPVTVMVTDRDGSIEYVNPNFTKVTGYSAEEALGENP-------RLVKSGWHPR 419

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH-------VIVTSNPRGGTIWMFENLT 420
           +   + W+  +       E         NG           V   S      + + E++T
Sbjct: 420 EFYAEMWQTVLSGREWRGEMRNK---RKNGDLYWESASISSVKGESGEIRNFVAVKEDIT 476

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   E       +     ++  +E +      G    +N A   L          G ++
Sbjct: 477 QRKRAEEALIRSDERIRLLLESTAEAIFGMDLLGNCTFANHACARLLGYPGTEELLGKNM 536

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--- 537
             +    S     +         +   +    +          +         P  Q   
Sbjct: 537 HLLIHHSSPDGTPNPVQKCPLYRVLRGEQGLHNDDQVFWRADGTSFAVEYWSYPQLQDGE 596

Query: 538 ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               ++TF ++++  RAE  L    EA   A   K+ F+ ++S+E+R+P+   +G   LL
Sbjct: 597 LVGGVVTFFDISERKRAEEELRRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLL 656

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K +    L+ +Q +Y+E   ++S +LL ++NDILD +  +AG M L      L+ +L+++
Sbjct: 657 KQT---GLSDQQKEYLEKAQSASDLLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDL 713

Query: 655 KQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709
               +  + E  I     + +G     V D  RL Q+   +  NA+ F+ KG   +    
Sbjct: 714 DNVASAILGEKEIEFGAYVGEGVPEVLVGDPLRLGQVLLNLAGNAIKFTEKGKVEVEIAL 773

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           L     +    FSV + G  +  +  +++F  F    +   RR  G GLGL+I    + L
Sbjct: 774 LALEEKDATLRFSVTDTGIGMDAEQQEALFTPFTQADNSTTRRYGGTGLGLAICRELVQL 833

Query: 768 HGGHVSISSSDEGVTTINC 786
            GG + + S     ++ + 
Sbjct: 834 MGGQMWVESEPGRGSSFSF 852



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 92/285 (32%), Gaps = 33/285 (11%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            +  +         + ++        ++  D     V   D+ G I + N ++   T+  
Sbjct: 341 EIGTLARAFNRMIQELRRQKESARELRLAIDQAPVTVMVTDRDGSIEYVNPNF---TKVT 397

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--------SYKIVR 281
           G   ++A+GE+ +L K     R   +   +          E  N +        S  I  
Sbjct: 398 GYSAEEALGENPRLVKSGWHPREFYAEMWQTVLSGREWRGEMRNKRKNGDLYWESASISS 457

Query: 282 VLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFDQN--RYLQFHNR 333
           V    GE      +  D+++     + L  + E +  L  + A AIF  +      F N 
Sbjct: 458 VKGESGEIRNFVAVKEDITQRKRAEEALIRSDERIRLLLESTAEAIFGMDLLGNCTFANH 517

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD--- 390
           +   L            +   L+      +  P+       K  ++ V +  +   +   
Sbjct: 518 ACARLLGYPGTEELLGKNMHLLI-----HHSSPDGTPNPVQKCPLYRVLRGEQGLHNDDQ 572

Query: 391 TWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKY 429
            +   +G +  V   S P+       G +  F +++ +   E + 
Sbjct: 573 VFWRADGTSFAVEYWSYPQLQDGELVGGVVTFFDISERKRAEEEL 617


>gi|119897783|ref|YP_932996.1| putative histidine protein kinase [Azoarcus sp. BH72]
 gi|119670196|emb|CAL94109.1| putative histidine protein kinase [Azoarcus sp. BH72]
          Length = 613

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 120/634 (18%), Positives = 229/634 (36%), Gaps = 58/634 (9%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDIL-W---------ANISYKK-------NTETEGIVFQ 234
           + V +++ D         D  G +  W          N +              +    +
Sbjct: 3   VDVCRLMQDESPDACIVLDADGAVRHWNGGAVRLFGYNAAEADGQLLIDLTVPPDRRAAE 62

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           +A+ +          + +                  H +   Y +  +           D
Sbjct: 63  QALLDDLPPLGNATHESVRQRKDGSLVHVALSMRRVHADGLPYVLTSMK----------D 112

Query: 295 VSKEITVNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           V++     +     T   ++L ++   I + +    + F N+    ++      L   P 
Sbjct: 113 VTQLKVAREARLVETRYRDLLESMPDGIVMVNALGRIVFSNQQADAMFGYGAGELRGQPI 172

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--- 408
              L   LR+A+       +   +     +       +      +G    + ++ +P   
Sbjct: 173 EALLPARLRTAHVGHRSHYFGQPRTRTMGMGLELFGLRH-----DGSEFPLEISLSPLHT 227

Query: 409 RGGTIWM--FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
             GT+ +    ++  +   E K+  L       ++   + + +   DGRI L N     L
Sbjct: 228 DEGTMVLSAIRDIAGRKKAEEKFRGL-------LESAPDAIVIVNRDGRIVLVNSQAERL 280

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +    + L     I  +     R  +       F             L G      +  +
Sbjct: 281 FGYARSELIDQQ-IEMLMPERFRAQHPGHRNSFFTDPRVRPMGVGLELFGRRRNGEEFPV 339

Query: 527 EYSIIPLPNAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           E S+ PL   +  L      ++T+  R ERAL EKN  L +A+  K+ F+  +S+ELR+P
Sbjct: 340 EISLSPLETEEGTLVSSAIRDITERKRFERALQEKNVELAQANAAKDHFLASMSHELRTP 399

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIGFT  L     G LN  Q + +  +  S++ LL+L+ND+LD+A ++AG  +  + 
Sbjct: 400 LNAIIGFTGTLLMKLPGPLNEDQEKQLRTVQRSASHLLSLINDLLDVARIEAGKFEPVFE 459

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + L   L E+   +  +     +R+++   G       D++   QI   +L NA+ F+ 
Sbjct: 460 PVDLCATLEELAVVLRPQAEAKGLRLELKLPGGSCVVETDQRAFSQIVINLLQNAIKFTE 519

Query: 704 KGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLG 757
            G  + L  AR   D        V ++G  I  D    +F  F     A    + G GLG
Sbjct: 520 HG-RIELALARIEADGRPAVELQVADSGIGIQPDDQTRLFAPFARITPAAGPAQEGTGLG 578

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L +        GG +++ S+    +  +  +P +
Sbjct: 579 LHLCLKLAAQLGGQIAMHSTYGEGSVFSLILPEQ 612


>gi|219670543|ref|YP_002460978.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
 gi|219540803|gb|ACL22542.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
          Length = 896

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 112/643 (17%), Positives = 236/643 (36%), Gaps = 78/643 (12%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRMISSS 256
           L D+L  L+W  D+AG+  + N ++ + T   G+ F +  GE        E    +++  
Sbjct: 7   LVDNLPALLWSSDRAGNYDYVNQAWLEFT---GLTFVEVRGEGWLSCVHPEDSPGVMNVL 63

Query: 257 ALEKNFCET-----VSTLEHGNNKS-------YKIVRVLNSFGEAGIAIDVSKEITV--- 301
              +                G  +        Y   +   + G  G+ ID+++       
Sbjct: 64  EHSRRHKAPFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELA-GYTGVIIDITERKAAEIM 122

Query: 302 -NDQLTHTYEILHNLTVAIAIF-----DQNRYLQFHNRSFVELWEIDLAFL----ATNPS 351
             +      EI + +T  + I       Q   +Q  N    EL  +  A +         
Sbjct: 123 TRENAEKFREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIK 182

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNP 408
               L       +     N+  + E +   ++  E   +    +H+ NG+ +        
Sbjct: 183 VKSPLTLANEFTQKLLSKNYLVF-EGMLLTHQGKEIPVEVKAHYHVLNGRRM-------- 233

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-----GRIKLSNPAF 463
               + +  +++ Q  +            +  D++++ V V+        G +   N   
Sbjct: 234 ---LLSIARDISNQKRIHKILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEINEKA 290

Query: 464 RSLWKTEENRLSP-----------GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           R L    E                   + ++  +  R ++ S     F  I T+ + E  
Sbjct: 291 RRLMGYHEETFMFSAGPCIRPSSPQLTLDDVWQSLERTHSAS-----FEGICTNLEGEDI 345

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            ++        +  +  +  L +           +  R E    +  E    A+  K+ F
Sbjct: 346 PVEVNCHTFPLNGSKVMLTLLRD--ITERKQIEQERKRTEAEFQQAKEKAEAANRAKSEF 403

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  IIG  DL   + L SL   Q + ++     +  L  ++NDILD + 
Sbjct: 404 LANMSHEIRTPINGIIGMIDL---TLLTSLEKTQRENLKIAKNCAYSLFKIINDILDFSK 460

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           ++AG + +      L +++ ++ ++ + +     + +       L  +   D +R+ Q+ 
Sbjct: 461 IEAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVL 520

Query: 692 SKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
           + +LSNA+ F+ +G        L+   D  D  F+V + G  I E+    +F  F  V  
Sbjct: 521 NNLLSNALKFTERGEVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDG 580

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +   +  G GLGL+I    + + GG + + S     ++    +
Sbjct: 581 SITRKYGGTGLGLAISRKLVEMMGGRIWVESEKGKGSSFGVVL 623


>gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 963

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 119/526 (22%), Positives = 204/526 (38%), Gaps = 58/526 (11%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
               + L+ T   L      I + D    +   N+  +++W I  A L T   + ++L  
Sbjct: 309 QRTAEALSLTEATLEATDNGILVIDLAGRVVSSNQRVIDMWRIPHALLETG-DDAQILTH 367

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQTL----HVIVTSNPRGGTI 413
           +      PE    K     +  +Y+  +   +DT    +G+      H     +   G +
Sbjct: 368 VIDQLADPEPFVRK-----VRELYEHPDASSRDTLLFRDGRVFARFSHPQRVGSAVVGRV 422

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETID--------------HLSEGVAVFGPDGRIKLS 459
           W F ++T Q   E     L +   E ++               + + V +  P G     
Sbjct: 423 WSFLDVTDQTRAEQNVRELSRQLSEELERSEQQRYLLQCLLSAIPDAVWMKDPQGVFLSC 482

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           NP F  +          G  +  I  T    Y   +  + F A      D+R++ + T  
Sbjct: 483 NPEFAQML---------GQDVDRIIGTSDDDYFPPEVAEAFRA------DDRRAAESTTP 527

Query: 520 LLSDSVLEY-------------SIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALR 563
           +  +  ++Y             S +   + +    +    ++T        L E   A  
Sbjct: 528 IRCEEWIDYVSDARRVLWATVKSAVRAEDGRLLGVLGIARDITSQHTVLTELEEARNAAL 587

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A E K+ F+ H+S+ELR+PL  IIGF+ +L    L  L ++Q   V +I  S   LL L
Sbjct: 588 QASEAKSRFLAHMSHELRTPLNAIIGFSQMLDMGALDPLTAQQQTAVSHIRDSGRHLLEL 647

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDILDLA +++G  +LN   I L+ L++EV            I I    +  L    AD
Sbjct: 648 INDILDLARIESGQSELNLDAIPLDPLIDEVMALSRPAADGRRICIDRGGEAGL-HVYAD 706

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R RL Q+   + SNA+ ++  G  V +            V + G+ I E + + +F  F 
Sbjct: 707 RTRLRQVLLNLTSNAIKYNRLGGRVTIDVEPAGEWVRIRVSDTGAGIDESLREEIFQPFQ 766

Query: 744 S-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              A +    G G+GL I +  I + GG +   S     +     +
Sbjct: 767 RLGAEKTAIEGTGIGLIICKHLIEVMGGSIDFDSVPGQGSRFWFEL 812


>gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 127/682 (18%), Positives = 253/682 (37%), Gaps = 87/682 (12%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           +       L      +  L + +   ++  D  G+ ++ N  + + T   G   Q A+G 
Sbjct: 136 QLAQTKAALQQSEHRYATLAEVVPVAIFRLDADGNCIYVNDRWSQIT---GEPIQAALGR 192

Query: 240 S-RKLFKEEIKKRM----ISSSALEKNFC-ETVSTLEHGNNKSYKIVRVL------NSFG 287
                   E   R+          EK +C E     + G    + +  +        + G
Sbjct: 193 GCLDTIHPEDSDRLFHQWTEVLTQEKMYCYEGKFLRKDGTTIWFYMQILPETDQNVTTIG 252

Query: 288 EAGIAIDVSKEIT------------VNDQLTHTYEILHNLTVAIAI-------FDQNRYL 328
             G   D+S++              + +      +I   LT+AI+        FD  +  
Sbjct: 253 YVGTLTDISEQQAALDDGLRPTIGDLIEAEAKLRKISERLTLAISSGRFGIWEFDCVQEK 312

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              +    EL+ +       N   D  L F+      P+  ++      I  V   ++ +
Sbjct: 313 VIWDERMYELYGVHPEDFPGN--FDAWLSFVH-----PDDQDY--LLVTIQQVLHQNQEY 363

Query: 389 KDTWHL--PNGQTLHV----IVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGET 439
              + +  P+G+   +    ++  + +G  I M     ++T +   E +      ++   
Sbjct: 364 DAEFQIIQPSGEIRVIKAYGVLNCDEQGKPILMVGINIDITERKQAEQELIHNRDLREVI 423

Query: 440 IDHLSEGVAVFGPDGRIKL-SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +  ++ + +  P   + L  N     L++        G   R +     R +  ++   
Sbjct: 424 FNESADALFLVDPVTLLTLDCNRRTVELFEATNKGELLGIEGRTLQ---RRPFTSNEIDT 480

Query: 499 LFAAIITS--FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           +   + T   +  E + +    +L   ++    I        ++   ++ +  +AE  L 
Sbjct: 481 IVTQMQTKGFWSQEIEYVTLKGKLFWGNIAAKPITIAGRTLNLVRVTDINERKQAEEKLL 540

Query: 557 EKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             NE L KA+        +K+ F+ ++S+ELR+PL  I+G ++       G++N KQ++ 
Sbjct: 541 RTNEQLAKANAELARATRLKDEFLANMSHELRTPLNAILGMSEGFIEGVFGAINQKQAKA 600

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S   LL L+NDILDL+ +++G ++L  S + +  + +     I     + NI +
Sbjct: 601 IATIKRSGKHLLELINDILDLSKIESGKLELQISDVSVRSICDGSLTFIQQMALKKNICL 660

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------------- 716
                  L +   D +RL Q+   +LSNA+ F+ +G  V L    +              
Sbjct: 661 STHIGSNLDTIQVDDRRLRQVLINLLSNAVKFTPEGGNVKLTVWLEEVGTNETLGAEKLI 720

Query: 717 -------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
                      F V + G  I  +    +F  F            G GLGL++V+    L
Sbjct: 721 SQSSIPSPHICFRVTDTGIGIASEDISKLFQPFTQLDSSLNRNYTGTGLGLALVKRITTL 780

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG + ++S     +    RIP
Sbjct: 781 HGGTILVNSEVGQGSCFTVRIP 802


>gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1290

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 113/596 (18%), Positives = 220/596 (36%), Gaps = 46/596 (7%)

Query: 217  WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            WA   +  +     +  ++ +    K F  + +      S         V   +HG    
Sbjct: 574  WAKHVHPDDLARVEVELRELLNTGSKEFFSDFRIIRQDGSICWLQSRARVFYDDHGQ--- 630

Query: 277  YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHN 332
                         G+ +DV++       L  +   L  L     + I   D    + F N
Sbjct: 631  --------PLRMVGVNVDVTERKQAEAALQQSEARLKRLLQSSIIGIIEADPE-RINFAN 681

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKD 390
             +F+++       L T          LR  +  P + + +  +  +  V  S      + 
Sbjct: 682  DAFLKIVGYTHEDLLTGK--------LRWQDMTPPEYS-ELDQAKVEEVINSGFCIPFEK 732

Query: 391  TWHLPNGQTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             +   +G  + +      ++S+P     ++  +LT +   +        +     D + +
Sbjct: 733  EYIRKDGSRVPILLGAARLSSSPLTWVCFIL-DLTERKQAQAALQQSELMFRTLADTMPQ 791

Query: 446  GVAVFGPDGRIKLSNPAF--------RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
               +  P+G  +  N  +                  +     ++          +    +
Sbjct: 792  MFWITQPNGYHEYFNQRWYDYTGTTLEQTQGAGWQNILHPDDVQRTIEQWQDSLDTGKDY 851

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            D+   +  + D E +   G    L D                   + + +  +A      
Sbjct: 852  DIEYRLRRAADGEYRWHLGRAFPLRDENGRILKWFGSCTDIHDQKLAIEERAQAWEQERA 911

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                L +A+ +K+ F+  VS+ELRSPL  I+G+  LLK+ KL +L + Q+  +E I  ++
Sbjct: 912  ARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQA--LEVIERNA 969

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +   L++D+LD++ +  G + LN  T+ L   +    +++       +I I+      +
Sbjct: 970  KLQARLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAESKSIHIQTELTSHV 1029

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                 D  RL Q+   +L+NA+ F+ +G  + +   R        V++ G  I  D    
Sbjct: 1030 CRVEGDPNRLQQVVWNLLTNAVKFTPEGGQIEVSLERVGSLAHIQVRDTGKGISLDFLPY 1089

Query: 738  VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
            VF RF        R   G+GLGL+IV   + LHGG V ++S  EG  TT   ++P 
Sbjct: 1090 VFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGAVQVTSPGEGLGTTFTVKLPL 1145



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 107/311 (34%), Gaps = 46/311 (14%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A +VS+   +     +  ++L      I IFD     ++ +    ++    +  +     
Sbjct: 110 AREVSEAK-LGKLKVNYRQLLETAYEGIWIFDSEGKTEYVSPQLAQILGYSVERIG---- 164

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-- 409
              +  FL    +L E   W   ++     +++ +         +G +L VIV+ +    
Sbjct: 165 EFSIFNFLEPQARL-EIEQWLEQQQKY--NHQTKQQFDLRLQRRDGASLWVIVSLSSILD 221

Query: 410 -----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G + M  ++T     + + +   +     +D L  GV +    G++   NP  +
Sbjct: 222 KHRRFSGAVAMLTDITEHKHEQAEPDLERQRLRAILDILPMGVVISDAKGQLLEINPGVK 281

Query: 465 SLWK--------------TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
           ++W                +      G  +     T +R     +        I +FD +
Sbjct: 282 AIWGEDAPLLDNTSQYHQYKGWWPDTGQPLTAAEWTLARTLATGEAIIGEEIDIATFDGK 341

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKA 565
           RK++              S +P+ +A       +   V++T+  R E AL +     +  
Sbjct: 342 RKTILN------------SAVPIYDATGAIVNAVTVNVDITERKRVEAALRQSEALAKAR 389

Query: 566 DEIKNSFVQHV 576
            E   + ++ V
Sbjct: 390 AEELETIMETV 400



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/462 (14%), Positives = 142/462 (30%), Gaps = 64/462 (13%)

Query: 26  VFGTIAGMLLTTIIPIILL--IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           +   I    +  +I  + L  +  R     K+ +              Y  LL       
Sbjct: 87  LLNLIVFASVAVLISSLNLQVLTAREVSEAKLGKLKVN----------YRQLLETAYEGI 136

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTD-TDLLSFENWLKFHHYIKLSKATEKLRK----EG 138
            ++D + +T  +  QL Q +        +   F N+L+    +++ +  E+ +K      
Sbjct: 137 WIFDSEGKTEYVSPQLAQILGYSVERIGEFSIF-NFLEPQARLEIEQWLEQQQKYNHQTK 195

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFL----RILSLDGIYSELAETTLKCKKLSNHISV 194
           Q FDL  + ++  ++ +   +    + L    R      + +++ E   +  +       
Sbjct: 196 QQFDLRLQRRDGASLWV---IVSLSSILDKHRRFSGAVAMLTDITEHKHEQAEPDLERQR 252

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA----------IGESRKLF 244
            + + D L   V   D  G +L  N   K     +  +                  + L 
Sbjct: 253 LRAILDILPMGVVISDAKGQLLEINPGVKAIWGEDAPLLDNTSQYHQYKGWWPDTGQPLT 312

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA------IDVSKE 298
             E       ++       E       G  K+     V        I       +D+++ 
Sbjct: 313 AAEWTLARTLATGEAIIGEEIDIATFDGKRKTILNSAVPIYDATGAIVNAVTVNVDITER 372

Query: 299 ITVNDQLTH-----------TYEILHNLTVAIAI-FDQNRYLQFHNRSFVELWEIDLA-- 344
             V   L                I+  +  A+ I  D   +    NR+  ++  +     
Sbjct: 373 KRVEAALRQSEALAKARAEELETIMETVPAAVWIAHDPLCHSMSVNRAAYDMMRVPPGSV 432

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
             AT  S      F    N     LN    ++   +  +     +  +   + + ++   
Sbjct: 433 MTATPASGGYPFPFKIQKNGQDIPLNELAMQQAGLTGQEVEAEVEFFFSPEDVRHIYGKA 492

Query: 405 TS--NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
               +P G   G I  F ++T +     +  +L++ + E +D
Sbjct: 493 IPLCDPDGNVRGVIGAFLDVTER----QQLMSLLQQKQEWLD 530



 Score = 44.2 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 87/273 (31%), Gaps = 24/273 (8%)

Query: 54  KVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL 113
           +  +  + L +   +L +   LL  +  +  + +   E          +I     +  L 
Sbjct: 643 ERKQAEAALQQSEARLKR---LLQSS--IIGIIEADPERINFANDAFLKIVGYTHEDLLT 697

Query: 114 SFENW--LKFHHYIKLSKA-TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS 170
               W  +    Y +L +A  E++   G  F +  E +          +    A L    
Sbjct: 698 GKLRWQDMTPPEYSELDQAKVEEVINSG--FCIPFEKEYIRKDGSRVPILLGAARLSSSP 755

Query: 171 LDGI--YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           L  +    +L E       L     +F+ L D++  + W     G   + N  +   T T
Sbjct: 756 LTWVCFILDLTERKQAQAALQQSELMFRTLADTMPQMFWITQPNGYHEYFNQRWYDYTGT 815

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMIS-----SSALEKNFCETVSTLEHGNNKSY--KIVR 281
             +   +  G    L  +++++ +        +  + +    +     G  + +  +   
Sbjct: 816 T-LEQTQGAGWQNILHPDDVQRTIEQWQDSLDTGKDYDIEYRLRRAADGEYRWHLGRAFP 874

Query: 282 VLNSFG----EAGIAIDVSKEITVNDQLTHTYE 310
           + +  G      G   D+  +    ++    +E
Sbjct: 875 LRDENGRILKWFGSCTDIHDQKLAIEERAQAWE 907


>gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 953

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 140/674 (20%), Positives = 254/674 (37%), Gaps = 70/674 (10%)

Query: 169 LSLDGIYSEL-AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-- 225
            +L  +  +L      +   L    +  + + +    +++ +D  G  ++ N ++ K   
Sbjct: 153 QALADLNQQLEVRVEERTAALRESEAKLEAMLNFAPAVIYVKDLQGRHIFVNRAFLKLFN 212

Query: 226 ---TETEGIVFQK-AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
               +  G V     + E   +F++  +  + S    +  F E V    H  N ++   +
Sbjct: 213 CTLADIIGKVNHDFYLPEVADVFEKHDRIVIESCHFHQ--FEEDVK--IHDKNYTFLSHK 268

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR-YLQF 330
            +        +   GI+ D+++     + L  + E     L  +   +   +    YL  
Sbjct: 269 FILFDQNQQPYALCGISNDITQRQAFYNALQRSQEQLKATLQAIPDLVFRLNSQGEYLAI 328

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           +   +V    +    LA   S  ELL         P  +  K  +    ++   +    +
Sbjct: 329 YPSEYVG--NLVDTKLAIGYSIMELL---------PPPIAAKYSQVTQTALATKTLQTYE 377

Query: 391 TWHLPNGQTLH--VIVTSNPRGGTIWMFENLTVQVDLETKYNTL-------VKVQGETID 441
              + +G   H  V V        +++  ++T Q     +               G   +
Sbjct: 378 QDVVIDGVLRHEEVRVAPCGDNEVVFVIRDITEQETALRERQKAADTIKKSEDRFGRIAN 437

Query: 442 HLSEGVA---VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           ++  GV    V  PDG     N  + S  + +E        I   A    + +   D   
Sbjct: 438 NMP-GVLYQYVLHPDGS---HNFMYMS-ERCQEIFGLDADTITRDANQLFQLFEAEDFIS 492

Query: 499 LFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQ------TMLTFVNVTDSVRA 551
           L A+I+ S       S +G L   S        I  P  Q           V++++    
Sbjct: 493 LKASILLSATTLNTWSWEGKLVTPSGENKWIQGISQPERQVNGDIVWDGVVVDISERKLM 552

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +    L +A  +K+ F+ ++S+ELR+PL  I+G ++ LK   LG+LNS Q   + 
Sbjct: 553 EIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALNSNQHHAIA 612

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL L++DILD++ ++AG ++L  + + + +L       +        I I++
Sbjct: 613 MIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLAFTKQINIEI 672

Query: 672 ISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVIL---------KAARDNGDFI 720
                L       D +RL Q+   +LSNA+ F+ K   + L          A        
Sbjct: 673 NIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNAAISTPQSIY 732

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           FSV +NG  I  D    +F  F         Q  G GLGL++V+  I LHGG V +SS  
Sbjct: 733 FSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQL 792

Query: 779 EGVTTINCRIPSKE 792
              +     +P  +
Sbjct: 793 GKGSCFTVYLPYHK 806


>gi|322436333|ref|YP_004218545.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321164060|gb|ADW69765.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 797

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 139/654 (21%), Positives = 243/654 (37%), Gaps = 50/654 (7%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
            R+  +D   +  +   ++   LS   +    + D++  LV  RD AG I+  N + +  
Sbjct: 160 ARVRHMD--RAGRSRLRVESA-LSVERNFVSAMLDTVGALVLVRDTAGRIVRFNRTCE-- 214

Query: 226 TETEGIVFQKAIGESR--KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-------S 276
               G   Q  +G     KL  E      +S+     N     S   H   +       +
Sbjct: 215 -AVSGYDLQSMVGRYVWEKLIPENEVAESVSTFERIVNGSSPTSFENHWLRRDGSLRRIA 273

Query: 277 YKIVRVLNSFGEAGI----AIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYL 328
           +    +++  G+        IDV+++    D L  +      L       +   D    L
Sbjct: 274 WSATALVDPQGQTNFIISTGIDVTEQREAEDTLRESEARYRQLIEGSLGMVCTHDLEGKL 333

Query: 329 QFHN--------RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
              N            EL   +LA L          ++LR   +  E            +
Sbjct: 334 LSVNLHGAQSVGYEVEELIGRNLALLLAPSRRPHFQDYLRQVQQTGE------------A 381

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             +   TH++           +I  +      +    +++ QV  E K   L+      +
Sbjct: 382 QGRLYLTHRNGSERIIAYRNKLIEIAGREPYVLGFGVDISEQVQAEGKLRNLIDQSNSIL 441

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           + + +G+     +GR+ + NPA   +   + + L        I  T +            
Sbjct: 442 ESVGDGIYGLDLEGRVTVVNPAAAQMLGYKPHELLGRNMHEVIHHTRADGSAHDFHDCAV 501

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              I + D  R S          +      +  P  +     +    +V    A  +  E
Sbjct: 502 MRAIDALDTMRVS-DEVFWRKDGTCFPVEYVARPQIEASEDGIRPGRAVGVVVAFADTTE 560

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             R+ D +K+ F+  VS+ELR+PLT++     L+    L +   K  Q ++   A++  L
Sbjct: 561 R-RQLDRMKDEFISTVSHELRTPLTSLRAALGLVTGGALATRPDKMKQMLQIAIANTDRL 619

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + LVNDILD+  + +G  +L        DLL    +       ++N+R +V S+      
Sbjct: 620 VRLVNDILDIERIGSGSSELRPVMSAAEDLLERATKIHQGATFKHNVRFRVESND--VRV 677

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVF 739
            AD  R+LQ  S ++SNA+ FS     + L A   D  +  F + + G  IP+D  +++F
Sbjct: 678 WADPDRILQALSNLISNAIKFSPPEGEITLTARYLDEQEAQFDISDQGPGIPQDRLENIF 737

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF        R   G GLGL+I  S I  HGG +  SS      T +  +P+K
Sbjct: 738 ERFQQVDASDTRAMGGTGLGLAICRSIIAQHGGRIWASSPPGKGATFHFTLPTK 791


>gi|329965407|ref|ZP_08302331.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328522199|gb|EGF49313.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 894

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 115/513 (22%), Positives = 212/513 (41%), Gaps = 31/513 (6%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N T  I    ++  L F NR F E   I      T 
Sbjct: 233 GYVQNITDIQQRRNDINLLTHAINNSTEDIYSVHEDGTLIFGNRCFKERHGIGDTQDITK 292

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----------NGQT 399
               +L  + R           K+WKE   SV +         H P           G  
Sbjct: 293 LKIYDLPSYGRDE---------KSWKEFAESVKRGDTAQGYIVHNPLPLCPEVLAIEGNA 343

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
             V  TS+   GT+W F  ++T ++  E +     ++  + I++L  G+ V       K 
Sbjct: 344 YWV--TSDKGEGTVWTFGRDVTSRIRHEQQVKRFNRILDKIIENLPAGIVVKDISNNFKY 401

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATC-SRYYNESDGWDLFAAIITSFDDERKSLQGT 517
                 S  +  +   + G    +      ++   E D           +  E   + G 
Sbjct: 402 IYRNRESYNRGIKMTEALGKDDFDFYPLETAKRKREQDIKIAETGKEMHWTAEEHDINGK 461

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              L    ++       +   +    ++T+  R +R L    E    +D++K++F+ ++S
Sbjct: 462 SIYLDKRKMKIESSEF-SPILLSIEWDITEMERMKRELLVAKEKAEASDQLKSAFLANMS 520

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ ++  S       ++  Y E ++ ++  LL L+N+ILDL+ ++AGI
Sbjct: 521 HEIRTPLNAIVGFSRIIAESTDA---DERLNYYEIVAVNNERLLQLINEILDLSKIEAGI 577

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++   + + L+ L  E+  +   +  +  + +   S  +      D+ RL Q+ S ++ N
Sbjct: 578 VEFTITPVRLHSLCKEIYDAHVFRCPQ-GVELIYESSDEGIVIDGDKNRLFQVVSNLIGN 636

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A  F++ G  +     R+    +F V + GS I  D    +F RFV      Q  G GLG
Sbjct: 637 AFKFTTNG-KISYGYHREGDYVVFHVNDTGSGIAADKLDRIFERFVKVNTFAQ--GTGLG 693

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LSI ++ I   GG++S+SS     TT    +P 
Sbjct: 694 LSICKTIIERMGGNISVSSEIGKGTTFTFILPL 726


>gi|71908897|ref|YP_286484.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
 gi|71848518|gb|AAZ48014.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 856

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 112/505 (22%), Positives = 202/505 (40%), Gaps = 27/505 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  +   +     IL      +   D+N Y++F NR+   +   D + L     + E++ 
Sbjct: 229 ETALRHAIEENRLILETTDEGMFGIDRNGYIRFANRAAATMLGRDASSLVGRHHHPEIIT 288

Query: 358 ------FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG- 410
                   R             W  +      ++E             +   V + P G 
Sbjct: 289 SSTGCPICRMLASAGPTRVSDGWFNHGIPQPNAAEPITF--------PVEYSVAARPDGE 340

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           GTI  F ++  +   E K     +   + I+ + +  A+F  + R+ L N  F  L+  E
Sbjct: 341 GTIISFRDIADRHAAEIKLQRFQQRLVDAIEAMDDAFALFDGEDRLILHNLRFAELFSPE 400

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSL-QGTLELLSDSVLEY 528
            + +  G          +         D     + T  +  R++     + L + S L  
Sbjct: 401 SSTIRIGMSFSEFIHDIAVQGLYPQTTDGGNDWLATRMEMHRQAAGSSEIPLANGSWLRI 460

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +        T++ + +V++  RA  A         +  + K+ F+  +S+ELR+PL  I+
Sbjct: 461 TERHTREGGTVVIWSDVSNLKRALIA-------ADQGSQAKSEFLARMSHELRTPLNAIL 513

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF  +L+      LN  Q +YV +I      LL L+N+ILDL+ +++G +K+    I L 
Sbjct: 514 GFARVLEKDAASPLNDAQQEYVHHILHGGQHLLGLINEILDLSAIESGKLKVEIEDIDLP 573

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +L+E    I        I +K IS  +  +  ADR+RL Q+   +LSNA+ ++  G  V
Sbjct: 574 SVLHECLALIKPLASNREITLK-ISGSESATVAADRKRLKQVLLNLLSNAIKYNRHGGEV 632

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            +            + + G  IP ++ + VF  F          G G+GL+I    + L 
Sbjct: 633 QVNIGATPSGIRLDISDTGQGIPPELAQRVFQPFDRLGLENS-EGTGIGLAITRRLVELM 691

Query: 769 GGHVSISSSDEGVTTINCRI-PSKE 792
           GG +   S+    TT    + P+ +
Sbjct: 692 GGSICFESTVNIGTTFRVELVPAGQ 716



 Score = 88.1 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 109/346 (31%), Gaps = 26/346 (7%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
               LR L +  +   L E       L + I   +++ ++ D  ++  D+ G I +AN +
Sbjct: 207 GLGILRPL-IRQVRHALEEQEKSETALRHAIEENRLILETTDEGMFGIDRNGYIRFANRA 265

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK------ 275
                               ++        +    A       +     HG  +      
Sbjct: 266 AATMLG-RDASSLVGRHHHPEIITSSTGCPICRMLASAGPTRVSDGWFNHGIPQPNAAEP 324

Query: 276 -----SYKIVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
                 Y +    +  G      D++     EI +        + +  +  A A+FD   
Sbjct: 325 ITFPVEYSVAARPDGEGTIISFRDIADRHAAEIKLQRFQQRLVDAIEAMDDAFALFDGED 384

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT-WKENIFSVYKSS 385
            L  HN  F EL+  + + +    S  E +  +      P+  +    W      +++ +
Sbjct: 385 RLILHNLRFAELFSPESSTIRIGMSFSEFIHDIAVQGLYPQTTDGGNDWLATRMEMHRQA 444

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
               +   L NG  L +       GGT+ ++ +++         +   + + E +  +S 
Sbjct: 445 AGSSEI-PLANGSWLRITERHTREGGTVVIWSDVSNLKRALIAADQGSQAKSEFLARMSH 503

Query: 446 -------GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                   +  F        ++P   +  +   + L  G H+  + 
Sbjct: 504 ELRTPLNAILGFARVLEKDAASPLNDAQQEYVHHILHGGQHLLGLI 549


>gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1340

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 143/847 (16%), Positives = 292/847 (34%), Gaps = 131/847 (15%)

Query: 44  LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW--DGKDETPEIIGQLHQ 101
           L+   + L  ++ E     +E+ +   ++   L        VW  D ++ T     +   
Sbjct: 118 LVSANDRLTAQLVEQRRIEAELRESRERFE--LAAEGADVGVWEWDLQEHTAYYSSRWKS 175

Query: 102 RIDIPQTD--TDLLSFENWLKFHH-YIKLSK------------ATE-KLRKEGQSFDLVA 145
           ++   +++    +  +E  L        L+               + +LR    S+  ++
Sbjct: 176 QLGCAESEIGGTIADWETRLHPDDRARALATVTLFQEGYTKQYRLDHRLRHHDGSYRWIS 235

Query: 146 ETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL 205
                   + +GR+           + GI+ ++   T   +        ++ L +    +
Sbjct: 236 SLGAGVFDE-QGRMIR---------MTGIHLDVTARTQAEEARRESEDRYRTLVEQAGDI 285

Query: 206 VWHRDQAGDILWANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           ++  D AG  ++ N +  +       E  G  + + +    +   E    R         
Sbjct: 286 IYRTDAAGRFIYCNPTSLRVLGYLPEELLGRHYLEIVLPQCRSQAERFYGRQFVRKTPRT 345

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAG----IAIDVSK----EITVNDQLTHTYEIL 312
            +   V+T +       +  ++L   G       +A D+++    E  + +      +  
Sbjct: 346 VYEVPVATKDGREVWLGQHTQLLLEGGVVSGFQVVARDITERKGVEQALRESEERFSKAF 405

Query: 313 HNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSND-ELLEFLRSANKLPEQLN 370
           H+    +AI   ++  +   N +FV +       L    S D  +         L E L 
Sbjct: 406 HSSPAGMAISRLEDGRVLDVNEAFVRVSGFSREELIGMSSLDVGIWVNPEDRRHLAEILT 465

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RGGTIWMFENLTVQVDL 425
              +  ++   +++           +G+  H +    P         + +  ++T + + 
Sbjct: 466 RDGFLRHLEKEFRT----------KSGEVRHGLFNVEPVCIGRETCVLTLVLDITRRTEA 515

Query: 426 ETKYNTLVKVQGE---------------------TIDHLSE-----------GVAVFGPD 453
           E        V                         ++ L +            V +    
Sbjct: 516 EAALRRSQSVLQAHQHALMRLTKSQHIGSGDWQSALEELMQTSALVLAVDRASVWLLDRT 575

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G I      +        +      ++       +    E        A  +   +  + 
Sbjct: 576 GTILDCVELYEQ--GQARHSRGQRLNVAEYPRYFAELLQEQVVDAYDVAADSRASELVQP 633

Query: 514 LQGTLELLS------------DSVLEYSIIPLPNAQT-------------MLTFVNVTDS 548
             G L + S              V+ +  + LP   T             +         
Sbjct: 634 YLGALGIASLLDVPIFFGGRLAGVVCHERVGLPREWTREEVQFATSVGNLVALAYEAKQR 693

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           + AE AL    EA   A+  K+ F+  +S+E+R+P+  I+G  DLL  +    LN  Q +
Sbjct: 694 LEAETALMSAKEAAEFANRAKSDFLATMSHEIRTPMNAIVGMADLLSET---PLNEDQRE 750

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV+    + + LL+L+ND+LDL+ ++AG + L+     LNDL+    + +A +  E N+ 
Sbjct: 751 YVQIFRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFDLNDLVQRAAELVAVRASEKNLE 810

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFS 722
           +       + +  V D  RL Q+   +L NA+ F+ +G  V L+  RD      G  +F+
Sbjct: 811 LAYQIQPDVPTSLVGDPNRLRQVLLNLLGNAIKFTDEGEVV-LRVERDPQADGPGTILFT 869

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IP D   ++F RF        R   G GLGL+I    +   GG + + S    
Sbjct: 870 VRDTGIGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGLTISRRLVERMGGKMWVDSELGR 929

Query: 781 VTTINCR 787
            +T +  
Sbjct: 930 GSTFSFT 936



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/490 (14%), Positives = 147/490 (30%), Gaps = 37/490 (7%)

Query: 112 LLSFENWLKFH----HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR 167
           LL+   WL         +  S+A   +   G ++ L    + + A+    R + S   LR
Sbjct: 55  LLAGGLWLAPPGVDVTAVMFSRAIGTVMIWGAAYLLSQRREAEDAL----RAANSRLELR 110

Query: 168 ILS--------LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           +           D + ++L E      +L      F++  +  D  VW  D      + +
Sbjct: 111 VAEQTKNLVSANDRLTAQLVEQRRIEAELRESRERFELAAEGADVGVWEWDLQEHTAYYS 170

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
             +K             I +       + + R +++  L +        L+H        
Sbjct: 171 SRWKSQLGCAESEIGGTIADWETRLHPDDRARALATVTLFQEGYTKQYRLDHRLRHHDGS 230

Query: 280 VRVLNSFG------------EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFD 323
            R ++S G              GI +DV+     E    +       ++      I   D
Sbjct: 231 YRWISSLGAGVFDEQGRMIRMTGIHLDVTARTQAEEARRESEDRYRTLVEQAGDIIYRTD 290

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
                 + N + + +       L      + +L   RS  +      +   ++   +VY+
Sbjct: 291 AAGRFIYCNPTSLRVLGYLPEELLGRHYLEIVLPQCRSQAERFYGRQF--VRKTPRTVYE 348

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                KD   +  GQ   +++      G   +  ++T +  +E       +   +     
Sbjct: 349 VPVATKDGREVWLGQHTQLLLEGGVVSGFQVVARDITERKGVEQALRESEERFSKAFHSS 408

Query: 444 SEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             G+A+    DGR+   N AF  +       L   + +                      
Sbjct: 409 PAGMAISRLEDGRVLDVNEAFVRVSGFSREELIGMSSLDVGIWVNPEDRRHLAEILTRDG 468

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            +   + E ++  G +     +V    I        +   +++T    AE AL      L
Sbjct: 469 FLRHLEKEFRTKSGEVRHGLFNVEPVCIG--RETCVLTLVLDITRRTEAEAALRRSQSVL 526

Query: 563 RKADEIKNSF 572
           +         
Sbjct: 527 QAHQHALMRL 536


>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1782

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 121/737 (16%), Positives = 260/737 (35%), Gaps = 73/737 (9%)

Query: 94   EIIGQLHQRIDIPQ--TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC 151
            ++   L Q +           L           +  ++    L+ +G  F        + 
Sbjct: 559  QVEALLPQELGERHVLERQTFLREGR----DRSMANARHVRALKADGNEF------IAEI 608

Query: 152  AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            A+ I               +     ++ +     +K+ +    F+ L  ++   V +R +
Sbjct: 609  ALSILPTAFDGQ-----RQVAASIRDMTQKLAVEQKIRDSEQRFRGLVTNIPGAV-YRTR 662

Query: 212  AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS---------SALEKNF 262
             GD+ +         E  G    + I   ++ F   I +    +         +  E   
Sbjct: 663  IGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRPTCHLHIDRALAQQETFE 722

Query: 263  CETVSTLEHGNNKSYK------IVRVLNSFGEAGIAIDVSKE----ITVNDQLTHTYEIL 312
             E       G+ +                    G   D+++     + +         I 
Sbjct: 723  VEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESKLALVQLEQSRQQMTNIT 782

Query: 313  HNLTVAIAIFD----QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             ++   +         +R   F + + +++  +    L +N   D + E +    +    
Sbjct: 783  ESIPCTVYQLQWQSPTDRRFTFLSGAAMKMLGLHRDDLMSN--FDIIAERIFDEERPDVV 840

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIW--MFENLTVQ 422
                   E+     +     +  +  PNG    +   ++      G   W     ++T +
Sbjct: 841  RALSGKSEDRLQWIR-----EFRYRHPNGSIRWMEAGASGHLGEEGAITWNGYVMDITQR 895

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              +E +            D  + G+      G I   N  F +      N L     I  
Sbjct: 896  KTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCADMALSRNHLRNTA-IFE 954

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---- 538
            + +   +   ++   +L    I  +  ER  ++ +   L    +  ++  L +AQ     
Sbjct: 955  VLSEQDQPIAKAQFQELVEGKIDHYRGERSFIRPSGAPL---WMTVNVSALLDAQGQFES 1011

Query: 539  -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +++ V++T+       L    E    A + K  F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   L+ KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++   
Sbjct: 1072 E---LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDM 1128

Query: 658  IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
             + K     I +       +    + D  RL Q+   +++NA+ F+ +G  +    +++ 
Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
              D+    FSV+++G  + E     +F  F        R   G GLGL+I +  + L GG
Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248

Query: 771  HVSISSSDEGVTTINCR 787
             + + S     +T    
Sbjct: 1249 KIGVESQFGHGSTFYFT 1265



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 56/418 (13%), Positives = 127/418 (30%), Gaps = 61/418 (14%)

Query: 164 AFLRILSLDGIYSELAET--TLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWAN 219
           A   I++L   ++++AE     +   L +  + F  L D +    ++   D  G +    
Sbjct: 363 AVSEIVTLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQL---- 418

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL---------- 269
                          K +G S  L K + ++   ++   EKN+  T   L          
Sbjct: 419 -------AQVSEGVTKVLGISPDLLKRKYQRLFSANPLNEKNWQYTDLALKGQNVPSHQV 471

Query: 270 ----EHGNNKSYKIV-RVLNSFGEAGIAIDV--SKEITVNDQLTHTYEILHNLTVAIAIF 322
               + G+ +   +  + L S     +++++  +           +  +L     A+ I 
Sbjct: 472 EMLDDQGHLRRLDVFMQPLMSDTGELMSVEMLFTDVTEQFSAAVWSNAVLEAAPEAMLIV 531

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D+   + F N   ++L+  +   +        L + L   + L  Q   +  ++   +  
Sbjct: 532 DELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMANA 591

Query: 383 KSSETHKDTWHLPNGQTL--HVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKV 435
           +     K      +G      + ++  P     +        ++T ++ +E K     + 
Sbjct: 592 RHVRALK-----ADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               + ++   V               +R+             +I  I    +  + E +
Sbjct: 647 FRGLVTNIPGAV---------------YRTRIGDVWFMEYISDNIAEITGYAASQFIE-N 690

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNAQTMLTFVNVTDSVRAE 552
               FA++I   D     L     L      E    I   +            S   E
Sbjct: 691 RQRTFASLILEEDRPTCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEE 748


>gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 769

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 109/496 (21%), Positives = 213/496 (42%), Gaps = 40/496 (8%)

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            + +R+  E+       L   P N  L     +A   P+  N+    + +    K     
Sbjct: 281 VYWSRAMYEM-------LGYEPQNALLSISQITAIIDPKDANFFELAQELMESKKKHIDI 333

Query: 389 KDTWHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                   G  + + + +          + +  +++ Q     +         + I+++S
Sbjct: 334 NVPMRHAEGHYVWMRIRAEVTDEEEPHLVGISFDISEQHQFAEQTAQADLRIRDAIENIS 393

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           E   ++  +GR+ +SN  F       +  L  G     + A      +E       +  +
Sbjct: 394 ESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKIDESGNL 453

Query: 505 TSFD----------DERKSLQGTLELLSDSVLE---------------YSIIPLPNAQTM 539
           TS            +ER++  G L  +   + E               +S I        
Sbjct: 454 TSIRQTANGYWLKINERRTQDGGLVCVGTDISELKQQQEKFEDSERRLFSFIQELKRARG 513

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                 T+  +  ++L E+ E    A++ K+ F+ ++S+ELR+PL  I+GF++++  S  
Sbjct: 514 NAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPLNAILGFSEIMLQSTF 573

Query: 600 GSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           G L S++  +Y+  I  S T LL L+NDILD++ ++AG   L+   I L  +++E  +++
Sbjct: 574 GPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEPIISETIRTL 633

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +     I +    + KL + V D + + QIF  ++SNA+ F+  G ++ ++A + N +
Sbjct: 634 TPQAQAKKISLTTNIEQKLHADV-DCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNN 692

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IFS+K+ G  IP++  K +   F    +       G GLGL+I  S + LH G + I+S
Sbjct: 693 LIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITS 752

Query: 777 SDEGVTTINCRIPSKE 792
            +   T +   +P ++
Sbjct: 753 KEGKGTIVTIIMPIQQ 768



 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 89/283 (31%), Gaps = 31/283 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
             +   +   +  +    I++ +      D+ +     +G + W+   Y +    E    
Sbjct: 244 TRARNTDLISEKIQNRIDIAMMRGRCGLWDWNM----ASGRVYWSRAMY-EMLGYEPQNA 298

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-----HGNNKSYKIVRVLNSFGE 288
             +I +   +   +       +  L ++  + +          G+    +I   +    E
Sbjct: 299 LLSISQITAIIDPKDANFFELAQELMESKKKHIDINVPMRHAEGHYVWMRIRAEVTDEEE 358

Query: 289 ---AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
               GI+ D+S++    +Q         + + N++ +  ++D    L   N  F E   I
Sbjct: 359 PHLVGISFDISEQHQFAEQTAQADLRIRDAIENISESFVLWDSEGRLVMSNSKFCEYAAI 418

Query: 342 DLAFLATNPSNDELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
               L +      +    R A ++ P +++              S          NG  L
Sbjct: 419 PKQMLQSGIERATVEAMSRPAISEYPLKID-------------ESGNLTSIRQTANGYWL 465

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +       GG + +  +++     + K+    +     I  L
Sbjct: 466 KINERRTQDGGLVCVGTDISELKQQQEKFEDSERRLFSFIQEL 508


>gi|160882913|ref|ZP_02063916.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|237722969|ref|ZP_04553450.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372527|ref|ZP_06618909.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
 gi|156111777|gb|EDO13522.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|229447491|gb|EEO53282.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632336|gb|EFF50932.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
          Length = 785

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 119/651 (18%), Positives = 250/651 (38%), Gaps = 49/651 (7%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKV-----------------LFDSLDFL--VWHRDQAG 213
            +  +L     + ++L   +S  +                  + DSL  +  V+++ + G
Sbjct: 9   ALLEQLEALKKENEQLRKELSTLRDEKYNDRPVSFKEKYAVRILDSLPDMLTVFNQSEVG 68

Query: 214 DILWANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
             + +N         N +  G+  Q  +        + I   M  +              
Sbjct: 69  IEVVSNEETNHVGISNKDFRGMRMQDMVPPEA---YQNIHSNMRHAITTGTVSTAHHELD 125

Query: 270 EHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
            +G    Y+  +  L+      +  D+++ +    QL     +L  ++ +I     +  L
Sbjct: 126 FNGERHYYENRIFPLDEEYVLIMCRDITERVATQRQLEVFKSVLDKVSDSILAVAGDGTL 185

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDEL--LEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            + N+ F+E + +          +  +   +      +L E  +     +  F+   +  
Sbjct: 186 VYANKQFIEEYGVTQELGTQKVYDLRVSMTDRGAWEKRLQEIRD----NDGSFAYRAAYI 241

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            +  T    +  +  +I  +N     IW F +++T  +    +   L  +    ++++  
Sbjct: 242 PYGHTKERVHQVSAFLIRENNQE--LIWFFTQDITDVIKKRDELRELNLLLDGILNNIPV 299

Query: 446 GVAVFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            + V  P  D R    N AF        ++    T                D  +L    
Sbjct: 300 YLCVKDPEDDFRYLYWNKAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQT- 358

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEA 561
               D +   L    E      L+ +++P+   +   +    ++T+    E+ L      
Sbjct: 359 HKRIDMQETYLSANGEARIVQTLK-ALVPMEGRKPLLIGISWDITNLQNIEQELIRARIK 417

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             ++D +K++F+ ++S+E+R+PL  I+GF+ LL          ++  Y + I+ +S ILL
Sbjct: 418 AEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL---PSAETAEEKKLYSDIINQNSDILL 474

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILDL+ ++AG ++     + L ++   +      ++ E  + +   ++ +     
Sbjct: 475 QLINDILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVKE-GVTLVFDNEEEDLLME 533

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D+ R++Q+ +  L+NA  F+ +G  +     R + D    VK+ G  I  +    +F R
Sbjct: 534 GDQNRIMQVITNFLTNASKFTYEGE-IRFGFGRMDKDIRVYVKDTGIGIEPEKVDHIFER 592

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           FV      Q  G GLGLSI    I   GG + ++S     +T    IP +E
Sbjct: 593 FVKLNSFAQ--GTGLGLSICRMIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 1313

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 111/518 (21%), Positives = 205/518 (39%), Gaps = 38/518 (7%)

Query: 294  DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNP-- 350
            D+ +   V ++L      +      I I D +  ++F N +F           +  NP  
Sbjct: 572  DILERKRVEEELRKFSRAVEQSANTIVITDLDGKIEFVNPTFSIKTGYSYEEAIGKNPRI 631

Query: 351  --SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
              S    +EF  +      Q N   W+  + +  K+ +     W      T+ V+     
Sbjct: 632  LKSGKHPIEFYENLWATITQGN--VWQGELLNKRKNGDLF---WEFA---TISVLKDRTG 683

Query: 409  RGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            +        E++T +   E    T        +DH S  +     +G     N A     
Sbjct: 684  QKTHFLAIKEDITERKKAEEALRT----YQFVVDHASIQIFWVSQEGEFYYVNEAACRTL 739

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDSV 525
               + +L   T + +I    S    +     L        +   ++  G +    L+ + 
Sbjct: 740  GYSKQKLLSMT-VTDINPDISSETWDIHWQKLLQTQKIQTESHHQNQAGNIYPIELNANY 798

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            LE+       A ++    ++++  RAE+AL E  E    A++ K++F+  +S+ELR+PL 
Sbjct: 799  LEFQ----GKAFSISFVQDISERKRAEKALLEAKEVAESANQAKSTFLASMSHELRTPLN 854

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             I+G+T +    K  SL  KQ + ++ I  S   LL L+NDILDL+ +++G ++L  +  
Sbjct: 855  GILGYTQIFNHDK--SLTEKQQEGIQIIQRSGEHLLTLINDILDLSKIESGKLELMPTDF 912

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
              ++ L ++      +  + N+        +L +   AD +RL Q+   +LSNA+ F+ +
Sbjct: 913  RFSNFLKDIADLFRMRAEQKNVEFIYEPLSQLPTAVYADEKRLRQVLLNLLSNAVKFTQE 972

Query: 705  G----STVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGV 754
            G      +           +     F V++ G  I  D  + +F  F        Q  G 
Sbjct: 973  GQVSFKVIYQSVPAPSTEENKNTIRFEVEDAGQGIAPDDLERIFLPFQQVGDQSEQVEGT 1032

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGL I +  + +  G + + S     +     IP  E
Sbjct: 1033 GLGLPISKKLVEMMAGQLQMQSMLGVGSIFWFEIPLPE 1070



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/503 (11%), Positives = 160/503 (31%), Gaps = 60/503 (11%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD--ILWANISYKKNTETEG 230
            +  E+AE     K L     +   L  +L  + +           + +      T  + 
Sbjct: 145 DLKQEIAERQQAEKALRKSERLMSTLLSNLPGMAYRCSNDRRRAATFVSQGCYDLTGYQS 204

Query: 231 --------IVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK--- 278
                   +     +     +    EI+  +    + +  +       ++G  K      
Sbjct: 205 DELINHTKMTLADLVHPKDYERIYHEIQIALQERRSFQLTYR---IYCQNGKQKWVWEQG 261

Query: 279 ---IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFH 331
                   +     G   D++++    + L  + + L     +    +  +D +  +   
Sbjct: 262 QGVFSEQGDVLSLEGFVKDITEQKQAEEALRESQQKLSLHIQHTPFGVIEWDMDFKVVAW 321

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N +  +++         + +N+ ++          + L  + W + I     +  T+ + 
Sbjct: 322 NPAAEKIFGYSQQEAIGHHANELVV------PPSAQHLVKQVWHDLINQQGGTHFTNNNL 375

Query: 392 WHLPNGQTLHVIVTSNPR-----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
               N  +     T          G   + +++T +   E        +   T+D+ S+ 
Sbjct: 376 TKAGNTISCEWYNTPLIDKKGHVIGVASLVQDITERRQTEEALR----LTQFTVDNASDA 431

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL--FAAII 504
           +   G +G    +N             L   T + +I         +     L    +I+
Sbjct: 432 IFWLGKNGHFIYANEETYHCLGYSREELLNMT-LSDIETDFPAQLWDEHWEVLQELGSIV 490

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
              D  RK        L+++  +++          L+  ++T+   AE  L +    L +
Sbjct: 491 LQTDYHRKDGSQFPVELTENYFQFN----DTEYLCLSVRDITERQNAEEELRKHRNHLEE 546

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
               +   + +V+ +L++   N+    D+L+  +   +  +  ++   +  S+  +  ++
Sbjct: 547 LVTERTEELANVNLQLQN--VNLQLQQDILERKR---VEEELRKFSRAVEQSANTI--VI 599

Query: 625 NDILDLATVDAGIMKLNYSTIVL 647
            D LD      G ++    T  +
Sbjct: 600 TD-LD------GKIEFVNPTFSI 615



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 74/515 (14%), Positives = 149/515 (28%), Gaps = 98/515 (19%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAE-----TQNDCAIKIEGRVSGSCAFLRILSLDG 173
           +    Y ++    +   +E +SF L         +     + +G+   S     +LSL+G
Sbjct: 219 VHPKDYERIYHEIQIALQERRSFQLTYRIYCQNGKQKWVWE-QGQGVFSEQGD-VLSLEG 276

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
              ++ E     + L        +      F V   D    ++  N + +K     G   
Sbjct: 277 FVKDITEQKQAEEALRESQQKLSLHIQHTPFGVIEWDMDFKVVAWNPAAEK---IFGYSQ 333

Query: 234 QKAIGE-SRKLFKEEIKKRMISS------SALEKNFCETVSTLEHGNN---KSYKIVRVL 283
           Q+AIG  + +L      + ++        +          +  + GN    + Y    + 
Sbjct: 334 QEAIGHHANELVVPPSAQHLVKQVWHDLINQQGGTHFTNNNLTKAGNTISCEWYNTPLID 393

Query: 284 NSFGEAGIA---IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
                 G+A    D+++     + L  T   + N + AI    +N +  + N        
Sbjct: 394 KKGHVIGVASLVQDITERRQTEEALRLTQFTVDNASDAIFWLGKNGHFIYANEETYHCLG 453

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                L     +D   +F       P QL  + W   +     S     D +H  +G   
Sbjct: 454 YSREELLNMTLSDIETDF-------PAQLWDEHW--EVLQELGSIVLQTD-YHRKDGSQF 503

Query: 401 HVIVTS-----NPRGGTIWMFENLTVQVDLETKYN------------------------- 430
            V +T      N          ++T + + E +                           
Sbjct: 504 PVELTENYFQFNDTEYLCLSVRDITERQNAEEELRKHRNHLEELVTERTEELANVNLQLQ 563

Query: 431 -----------------TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
                              ++     ++  +  + +   DG+I+  NP F          
Sbjct: 564 NVNLQLQQDILERKRVEEELRKFSRAVEQSANTIVITDLDGKIEFVNPTFS--------- 614

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL---ELLSDSVLEYSI 530
           +  G           R          F   + +   +    QG L       D   E++ 
Sbjct: 615 IKTGYSYEEAIGKNPRILKSGKHPIEFYENLWATITQGNVWQGELLNKRKNGDLFWEFAT 674

Query: 531 IPLPNAQT------MLTFVNVTDSVRAERALTEKN 559
           I +   +T      +    ++T+  +AE AL    
Sbjct: 675 ISVLKDRTGQKTHFLAIKEDITERKKAEEALRTYQ 709



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 56/422 (13%), Positives = 141/422 (33%), Gaps = 79/422 (18%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           L L  +  +L +  L+ K++   +  F    +     +   D  G I + N ++   T  
Sbjct: 560 LQLQNVNLQLQQDILERKRVEEELRKFSRAVEQSANTIVITDLDGKIEFVNPTFSIKT-- 617

Query: 229 EGIVFQKAIGESRKLFKE-----EIKKRMISSSALEKNFC-ETVSTLEHGNNKS-YKIVR 281
            G  +++AIG++ ++ K      E  + + ++      +  E ++  ++G+    +  + 
Sbjct: 618 -GYSYEEAIGKNPRILKSGKHPIEFYENLWATITQGNVWQGELLNKRKNGDLFWEFATIS 676

Query: 282 VLNSFGEA-----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           VL            I  D+++     + L     ++ + ++ I    Q     + N +  
Sbjct: 677 VLKDRTGQKTHFLAIKEDITERKKAEEALRTYQFVVDHASIQIFWVSQEGEFYYVNEAAC 736

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
                    L +    D   +           ++ +TW  +   + ++ +   ++ H   
Sbjct: 737 RTLGYSKQKLLSMTVTDINPD-----------ISSETWDIHWQKLLQTQKIQTESHHQNQ 785

Query: 397 -GQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGET-------IDHL 443
            G    + + +N      +  +I   ++++ +   E       +V           +  +
Sbjct: 786 AGNIYPIELNANYLEFQGKAFSISFVQDISERKRAEKALLEAKEVAESANQAKSTFLASM 845

Query: 444 S----------------------------EGVAVFGPDGR--IKLSNPAFR--------- 464
           S                            EG+ +    G   + L N             
Sbjct: 846 SHELRTPLNGILGYTQIFNHDKSLTEKQQEGIQIIQRSGEHLLTLINDILDLSKIESGKL 905

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSD 523
            L  T+    +    I ++    +   N    ++  + + T+ + DE++  Q  L LLS+
Sbjct: 906 ELMPTDFRFSNFLKDIADLFRMRAEQKNVEFIYEPLSQLPTAVYADEKRLRQVLLNLLSN 965

Query: 524 SV 525
           +V
Sbjct: 966 AV 967


>gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1643

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 150/817 (18%), Positives = 291/817 (35%), Gaps = 129/817 (15%)

Query: 47   QRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP---------EIIG 97
            +R +        +  +S+     ++  + L     + + W  +   P         +++G
Sbjct: 391  KRAATDGTTILLFQEVSKEEQNRTEALAFLNGGPVVALSWRPEPGWPVHYASANVEQVLG 450

Query: 98   QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS-FDLVAETQNDCAIKIE 156
               + +  P        F + L      ++ +       +G + F+ +   ++       
Sbjct: 451  YTAEELKAPGF-----RFADLLHPEDTQRVDREIRAQLADGAAHFEQLYRVRHR------ 499

Query: 157  GRVSGSCAFL------------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
               SG   +             ++  L G   +  E     ++L+       +  +S   
Sbjct: 500  ---SGGYRWCYDYTSPEYNEDGQLRLLRGYILDRTEEQQTLEQLTRSRERLALATESAGL 556

Query: 205  LVWHRD-QAGDILW---ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
             +W  D  +  + W       Y  ++E  G  FQ          +E  +     + A   
Sbjct: 557  GIWDYDLTSDQLDWDEGMFRLYGVSSEAFGGTFQDWTRTLMPESRERAQAAFEQAVAYSS 616

Query: 261  NFCETVST--LEHGNNKSYK----IVRVLNSFGE--AGIAIDVSKEITVNDQLTHTYEIL 312
             F  T+S      G  +  +    I+R          G+  D++++ T   +L       
Sbjct: 617  TFETTISIRRPIDGAERILQGQAQIIRDETDQAVRVVGVNRDITEQETNRRRLIAEEAKF 676

Query: 313  HNL----TVAIAI--FDQNRYLQFHNRS-----------FVELWEIDLAFLATNPSNDEL 355
              L     V IA+  F    +L+F N +           F  L   D+   +  P   E 
Sbjct: 677  RGLFELSPVGIAMNDFQTGEFLEF-NDAINEPAGYTREEFGRLSYWDVTPESYMPQEQEQ 735

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW- 414
            LE +R   +              +  ++    HKD    P    LH   T+ P G  +  
Sbjct: 736  LESMRRTGR--------------YGPFEKEYIHKDGHRYP--VLLHGFRTTTPEGREVIW 779

Query: 415  -MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-----GPDGRIKLSNPAFRSLW- 467
             + +++T     E       +         S GVAV+     G D      NPA   +  
Sbjct: 780  SIIQDITETKAAEAALQATKERFEGIFQKTSSGVAVYRPVDGGRDFEFLEFNPASERINQ 839

Query: 468  -------KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                     +   L PG     +     R         L    +T + DER S       
Sbjct: 840  VSREAVIGGKLTELFPGVVEMGLLGALQRVAGTGHPEHLP---VTDYHDERIS------- 889

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                  E  I  L + + +  + ++T+  +A+       E   +A   K+ F+ ++S+E+
Sbjct: 890  ---GWRENYIFRLSSGEVVAVYDDLTEIKQAQ-------EQAEQASRAKSEFLANMSHEI 939

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+PL  +IG + LL  +   SL+ +Q  ++  + +SS +LL ++NDILD + +++G ++L
Sbjct: 940  RTPLNAVIGLSQLLLET---SLDKRQQDHLNKVLSSSRMLLGIINDILDFSKIESGQLEL 996

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAM 699
            +  T  L+++++ +        H   + +      ++    V D  R+ Q+ + +LSNA 
Sbjct: 997  DTHTFDLHEVVDHLAALFGEVGHRKQLELVYSLPPQIPCVLVGDSLRITQVLTNLLSNAT 1056

Query: 700  DFSSKGSTVILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
             F+ +G  V +          D+    F V++ G  + E+    +F  F        RR 
Sbjct: 1057 KFTPEGGEVEMGIQLVEPPKADSVTLRFFVRDTGIGMSEEQLGRLFRAFTQADTSTTRRY 1116

Query: 753  -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL I    +   GG +  +S     +T    +
Sbjct: 1117 GGSGLGLVISRRLVERMGGALEATSKPGQGSTFAFEL 1153


>gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 691

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 100/627 (15%), Positives = 226/627 (36%), Gaps = 44/627 (7%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           ++ +  ++ ++  F+     ++  D+ G +L  N +  +    E     + +  +  +  
Sbjct: 67  RQRAEVLATYQAFFEHALEGIFQADRKGKLLAVNPALARMLGYEQPEQLQGLHLATDVLA 126

Query: 246 EEIKKR----MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS----K 297
           E  +       + +    +N    +    +G     ++          G   DVS     
Sbjct: 127 EATEFEHLLLQLEAHGAVRNHYLQLRRR-NGEVFWARMNIWKREELFEGTVEDVSSLQEA 185

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  +         +L +L V +     +  ++  N +   +   +           E L 
Sbjct: 186 EAALRASEARYQALLEHLPVGVYRSTPDGTIRTANPAAARMLGYESV---------EALL 236

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV------IVTSNPRGG 411
              + +   +    + + + +    ++  T +     P+G  + V      IV  + +  
Sbjct: 237 RANARSLYVDPAQREAFLKQLREKGEA--TAELALRRPDGTIIWVQNYARCIVEQDGQVY 294

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +  ++T +           +   + ++ L E V V   +  I  +N A  +      
Sbjct: 295 FDGVLIDITERKQARQALQETEERYRQLLEQLPEPVVVHDGE-TILYANAAAAAFAGLSS 353

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           +    G  I     T      ++D    +  +      +   ++  +     +V +  I+
Sbjct: 354 SEELIGKSIYQFLRT-----EKADAIRRYLEMAVQQGRQLPPMEQQMVRADGAVRDVEIV 408

Query: 532 -PLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
             L   Q    F     ++T+  + ER L E  E   +   +K++ + ++S+E+R+PL  
Sbjct: 409 SALVQYQGRPAFQVVLRDITERKQYERHLLEAKERAEEIARLKSTLLSNISHEIRTPLAG 468

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +IGF ++L+      L+    +    I  S   LL  +N +LDLA ++AG   L      
Sbjct: 469 VIGFAEVLEEE----LDEPHRELAALIRDSGRRLLETLNTLLDLARIEAGAFVLTPEPFD 524

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             D + +  +     + +  +R+++           DR    +I   ++SNA+ F+ +G 
Sbjct: 525 AADEVRQSVRIFQRMIDDKGLRLELDLPDAPLPVYLDRNGFHRIVVNLVSNAVKFTDEG- 583

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
            + +  A +       V++ G  I       +F  F    +       G GLGL+I    
Sbjct: 584 MIRVGLAAEGDWLRLQVQDTGVGIDPAFMPHLFEEFRQENNGLARTHPGSGLGLAITHRL 643

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + + GG + + S     TT    +P +
Sbjct: 644 VEMMGGRIEVQSEKGKGTTFTVWLPLR 670



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 62/456 (13%), Positives = 136/456 (29%), Gaps = 51/456 (11%)

Query: 4   GMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPI-ILLI-RQRNSLAKKVNETYSF 61
            +  + +  G+ + +      +V   +A ++ T      + L+ RQR  +       +  
Sbjct: 23  LLGGVLLSVGVAVLSWLQGWESVGLLVALLVATAAWGTGLWLMGRQRAEVLATYQAFFEH 82

Query: 62  LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121
             E   Q  +   LL  N    +      E PE +  LH   D+    T+       L+ 
Sbjct: 83  ALEGIFQADRKGKLLAVNPA--LARMLGYEQPEQLQGLHLATDVLAEATEFEHLLLQLEA 140

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS--LDGIYSELA 179
           H  ++ +   +  R+ G+ F                    +   +       +G   +++
Sbjct: 141 HGAVR-NHYLQLRRRNGEVF-------------------WARMNIWKREELFEGTVEDVS 180

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
                   L    + ++ L + L   V+     G I  AN +  +    E +        
Sbjct: 181 SLQEAEAALRASEARYQALLEHLPVGVYRSTPDGTIRTANPAAARMLGYESVEAL-LRAN 239

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-------VRVLNSFGEAGIA 292
           +R L+ +  ++        EK        L   +     +       V         G+ 
Sbjct: 240 ARSLYVDPAQREAFLKQLREKGEATAELALRRPDGTIIWVQNYARCIVEQDGQVYFDGVL 299

Query: 293 IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           ID+++       L  T E    +L  L   + + D    L + N +      +  +    
Sbjct: 300 IDITERKQARQALQETEERYRQLLEQLPEPVVVHDGETIL-YANAAAAAFAGLSSSEELI 358

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             S  + L   ++          + + E      +     +      +G    V + S  
Sbjct: 359 GKSIYQFLRTEKADAI-------RRYLEMAVQQGRQLPPMEQQMVRADGAVRDVEIVSAL 411

Query: 409 ---RGGTIW--MFENLTVQVDLETKYNTLVKVQGET 439
              +G   +  +  ++T +   E       +   E 
Sbjct: 412 VQYQGRPAFQVVLRDITERKQYERHLLEAKERAEEI 447


>gi|254412177|ref|ZP_05025952.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181143|gb|EDX76132.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1263

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 120/706 (16%), Positives = 250/706 (35%), Gaps = 93/706 (13%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS---YKKN 225
             + + +  E+ +     K L      F+ +F+++   +   D  G IL AN +   +   
Sbjct: 327  QANEELKREIRDRQQAEKTLRESEEQFRSIFENVSVGIALLDLDGYILTANEANCRFLGY 386

Query: 226  TETE-------GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
            +  E       G+   + +     LF   +  +  + +  ++   +  + +      S  
Sbjct: 387  SPDEIVGMHFSGLTHPEDLSLDTDLFDSILCGKRTNYTIDKRYLRQDGACVWGRITVSMI 446

Query: 279  IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRS 334
                 +    A +  D++    + ++L  + +    L     + I+I D+   +   N +
Sbjct: 447  KDEQSSPRYIAVVCEDINDRKQMEEELRESQQKYKTLFKIFPMGISITDKGGNIIEANSA 506

Query: 335  FVELWEIDLAFLATNPSNDELLEFLR-SANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
              E+  +      +   +      +R     +P              V ++ E       
Sbjct: 507  SEEILGLSRQEQTSRTYDAPNWSIIRLDGTPMPASEFASVRALTENRVIENMEMG--ILK 564

Query: 394  LPNG-QTLHVIVTSNP--RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
              +    + V     P    G    + +++ +  +E       +        L  G+++ 
Sbjct: 565  AKDKITWISVTAAPIPLADYGVAIAYIDVSDRKRMEKALRESQQKYKTLFQILPIGISIT 624

Query: 451  GPDGRIKLSNPAFRSLWKTEENRLSPGTHIR---NIAATCSRYYNESDGWDLFA----AI 503
               G +  +N A   +     +      ++    N+          S+  ++ A     +
Sbjct: 625  DKQGNLIEANAASEKILGLSVSDRINAKYVTPQLNVIRPDGTVMPRSEFANVKALIQNQV 684

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            I + +       G +  +S +    S IPL ++  ++ ++++T+  +AE AL +  E   
Sbjct: 685  IKNHEAGIVKPDGKITWISATA---SPIPLRDSGVVVAYLDITERKQAEEALQQAKEVAV 741

Query: 564  KA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +        +  K+ F+ ++S+ELR+PL  I+G+  LLK     +L + Q   +  I   
Sbjct: 742  REAKRSEIANRAKSEFLTNMSHELRTPLNGILGYAQLLKQD--TTLTNPQHHNLNIIHQC 799

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL L+NDILDLA ++A  M+L  +   L + L+ +      +  + +I         
Sbjct: 800  GEHLLTLINDILDLAKIEAQKMELYPTEFHLPNFLHSLADLFQLRAQQKDIIFTYQVLSP 859

Query: 677  LGS-FVADRQRLLQIFSKILSNAMDFSSKGST---------------------------- 707
            L +  +AD +RL Q+   +LSNA+ F+ +G                              
Sbjct: 860  LPNGVIADNKRLRQVLCNLLSNAIKFTDRGEVTFTVSVVNRTDVKSACRNSAVESKLSQS 919

Query: 708  ----------------------VILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFV 743
                                  V  + A+D       F +K+ G  I       +F  F 
Sbjct: 920  GFCTNLTSNSQNQVPKPTPTNPVYSRLAKDQHCKTIRFQIKDTGVGIDLSQLTKIFLPFH 979

Query: 744  S-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              + H     G GLGL+I +  I L G  + + S     +T    I
Sbjct: 980  QVSDHSHATEGTGLGLAISQKLIQLMGSEIKVKSIPGKGSTFWFDI 1025



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 90/301 (29%), Gaps = 37/301 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------- 349
           +E   N +      I ++   A+ I D        NR+  EL+++    L          
Sbjct: 54  QEQKGNSEACAFLAIFNDSLDAMVIADSQGKFLRVNRAAGELFKLSEDQLLHRTILETTP 113

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            S  +   FL          N+  W+ +     +  E       LP+             
Sbjct: 114 ISLHDWCHFLAQRRI---TYNFCLWRADGTQ--RDVELEGTANMLPD------------- 155

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWK 468
              + +  ++T     E           +    +S  V ++   + R   SN     +  
Sbjct: 156 -HHLLVLRDVTEYQQAEKALQQSQNFVEQISQSISAIVYIYDIIEQRNIYSNRTITEILG 214

Query: 469 TE--------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                     E  LS   H  ++A   ++    +   D    II +    R++      L
Sbjct: 215 YSPEAVQAMGETLLSQLMHPDDLAKLSAQIERLATASD--REIIETEYRMRRANGEWCWL 272

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            S   +          Q +    ++T    AE  +   N  L +  + +   +Q  + EL
Sbjct: 273 YSRDTVFTKTPDGKPQQILGVATDITTIKLAEAKILSLNAELEQRVKERTEALQQANEEL 332

Query: 581 R 581
           +
Sbjct: 333 K 333


>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1233

 Score =  323 bits (828), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 123/699 (17%), Positives = 264/699 (37%), Gaps = 69/699 (9%)

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS---NHIS 193
            G++ +L+        I   G+VSG  A +             +  L   KLS     + 
Sbjct: 151 SGRNGELIPVEFRSSPILQNGKVSG--ALVSFQDTSLHIEAANKLRLANDKLSSALRELE 208

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
             ++  D    +V   D+ G I++ N  +   +E       +  G+  ++       R  
Sbjct: 209 FQQLALDEH-AIVSIADKRGCIVYVNRKF---SEISQYTTDQLTGQDHRILNSGYHSRAF 264

Query: 254 SSSALEKNFCETVSTLEHGNNK----SYKIVRVLNSFGE--------AGIAIDVSKEITV 301
            +          V   E  N +     Y +   +  F +          +  D++    +
Sbjct: 265 FTDMWRTIEGGQVWHGEVRNRRRDGTFYWVESTIVPFMDEEGRPERYISVRTDITARKML 324

Query: 302 NDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
            +QL+        ++      + + D      + N     +       L   P +D +  
Sbjct: 325 EEQLSEQRAFYERISETMGEGLYVQDSEGRCTYMNSEAEHMLGWTREELLGRPVHDTIHC 384

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RG---G 411
                + LP +             ++  +     +   +G T  V  TS      G   G
Sbjct: 385 VTAEGDVLPAEQCPILLAVRKNGDWQGDD---QVFVRKDGTTFPVEGTSRAIIRDGVSYG 441

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           ++  F +++ + + E       +     ++    G+A++         + A   ++ ++ 
Sbjct: 442 SVVAFSDISERKNSERIVRLAQERLNLALE--GSGLALWD-------WDVAHDQVYLSDR 492

Query: 472 NRLSPGTHIRNIAATCSRYY-----NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             L  G  ++ +  T ++ +     +E    +     +    +E  S++  ++      +
Sbjct: 493 WSLILGDELQEVVITSTQLFSLVHADERAKIESDLVAVLKGQNEFYSVEFRVQRRDGVWI 552

Query: 527 EYS----IIPLPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                  ++   +   +     T  ++T    AE AL +  EA   A   K  F+ ++S+
Sbjct: 553 WIHTHGKVVDRDSNGRVTRMTGTNADITARREAEAALRQAKEAAEAASRAKGDFLANMSH 612

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  IIG T+L   ++   LNS+Q +Y+  + +S+  LL ++NDILD + +++G +
Sbjct: 613 EIRTPMNGIIGMTELALDTE---LNSEQREYLGLVQSSADALLTILNDILDFSKIESGKL 669

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
            +      L  +L E  +S+A + H+  + + +     +    + D  RL Q+   ++ N
Sbjct: 670 DIENIEFSLEHMLRETMKSLAVRAHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGN 729

Query: 698 AMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           A+ F++ G  + +      G         FSV++ G  I  D  +++F  F        R
Sbjct: 730 AIKFTASGE-IEVDVQCLKGAPEGQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTR 788

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           R  G GLGL+I    ++L GG +++ S     +     +
Sbjct: 789 RYGGTGLGLTISAQLVSLMGGSIALESEVGQGSNFYFTL 827



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 116/347 (33%), Gaps = 30/347 (8%)

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
           +L + ++++++      +      +  ++      Y  V       +  ++++ ++   V
Sbjct: 3   RLLERQLRRQLGKDFQADAALTSFLDIVDS----YYHEVDKEQRLLQNSLSMNTAELNAV 58

Query: 302 NDQLTH-----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           N+++       T  +L+ L+  +   D    L F N +  +        L   P  + + 
Sbjct: 59  NERMRIQNTEMTRTLLNTLSDGVYATDLEGCLTFMNAAAEKKLGWSEQELIGLPVQEHV- 117

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------G 410
           + L       +  +    K     V   +      +   NG+ + V   S+P        
Sbjct: 118 QCLLPDGSAQQPEDCPHLKSIRDGVSLQANA---IFSGRNGELIPVEFRSSPILQNGKVS 174

Query: 411 GTIWMFENLTVQVDLETKYN----------TLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           G +  F++ ++ ++   K              ++ Q   +D     V++    G I   N
Sbjct: 175 GALVSFQDTSLHIEAANKLRLANDKLSSALRELEFQQLALDE-HAIVSIADKRGCIVYVN 233

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             F  + +   ++L+   H    +   SR +       +    +   +   +   GT   
Sbjct: 234 RKFSEISQYTTDQLTGQDHRILNSGYHSRAFFTDMWRTIEGGQVWHGEVRNRRRDGTFYW 293

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           +  +++ +        + +    ++T     E  L+E+     +  E
Sbjct: 294 VESTIVPFMDEEGRPERYISVRTDITARKMLEEQLSEQRAFYERISE 340


>gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 705

 Score =  323 bits (828), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 170/394 (43%), Gaps = 22/394 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           MF N   +   E              ++ +EG+    PDGR   +NPA   +   +    
Sbjct: 285 MFSNTIERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYD---- 340

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAA------IITSFDDERKSLQGTLELLSDSVLEY 528
           SP   I N+    ++ Y +      F A      +I+ F+ +     GT   +S++    
Sbjct: 341 SPEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISENARAV 400

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                       T  ++T+   A  AL    EA   A+  K++F+ ++S+ELR+PL  II
Sbjct: 401 FDAMGELVCYEGTVEDITEGKTAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAII 460

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++++L               +E I  +   LL L+NDILD++ ++AG M L      ++
Sbjct: 461 GYSEILSEEAEELGYEDIVPDLERIYTAGKNLLTLINDILDISKIEAGRMDLFLEAFDIS 520

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            LL  V  +    M +NN  + V     +G   AD  ++ QI   +LSNA  F++ G  +
Sbjct: 521 SLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTNG-KI 579

Query: 709 ILKAAR---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            L+ +R               F V + G  + ++  + +F  F        RR  G GLG
Sbjct: 580 KLEVSRVSSLPYSQESGSVLEFKVHDTGIGMSQEQQEQLFQPFTQGDASTTRRYGGTGLG 639

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L+I + F  + GG++ + S+    +T    IP++
Sbjct: 640 LAISDRFCQMMGGNIQVESTLGEGSTFKVVIPTR 673



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 39/150 (26%), Gaps = 16/150 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELL 356
           E  +         I  N    I     +      N +   +   D    L  N ++    
Sbjct: 296 EEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDSPEDLIANLTDVSTQ 355

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI--- 413
            +++   +   +      K ++ S ++S        +  +G T+ +   +      +   
Sbjct: 356 LYVKPTRR--AEFVAAIAKSSVISGFES------QVYRQDGTTIWISENARAVFDAMGEL 407

Query: 414 ----WMFENLTVQVDLETKYNTLVKVQGET 439
                  E++T             +     
Sbjct: 408 VCYEGTVEDITEGKTAAEALERAKEAAETA 437


>gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella
           benthica KT99]
 gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella
           benthica KT99]
          Length = 1235

 Score =  323 bits (828), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 104/503 (20%), Positives = 197/503 (39%), Gaps = 21/503 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                +      +L  +  AI   D+       N++   +     + L      + +   
Sbjct: 451 ERREREYALLRSLLDAIPEAIVFKDKEGKYLGCNKAAERMLGYTESELIGQ---ESIKLT 507

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
            +  +   +  + +   E     Y+          L +   L          G I ++ +
Sbjct: 508 SKEQSVRIKAEDERVLAERTPLRYQEKVELAGKTVLLDTLKLPFYNRRGELLGLIAVWRD 567

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T + +   +     +     +D + +G+  +  D +  + NPA+ S+   + N      
Sbjct: 568 VTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALV 627

Query: 479 H-IRNIAATCSR----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             I  +     R     Y E    D   A    F    KS Q    L    V+E++    
Sbjct: 628 STIDELIHPDDRIRVQEYREQYLDDPVGAFDIEFRMRGKSGQYHWLLSRGRVVEFTADNQ 687

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P  + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   L
Sbjct: 688 P-KRMVGTHKDITRHKSNEVALLEAKQDAESANVYKSEFLANMSHEIRTPMNAIIGMLQL 746

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            + ++   L  KQ  Y+E    S+  LL ++NDILD + ++AG ++L      L+ +L+ 
Sbjct: 747 AERTE---LTPKQRDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDH 803

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                A K  +  + + + +    G  +  D  RL Q+   +LSNA+ F+  G  + L  
Sbjct: 804 ALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGE-IELGC 862

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
                        F V++ G  I ++   S+F+ F        R   G GLGLSI +  +
Sbjct: 863 EDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLV 922

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
           ++ GG + + S     +T +  I
Sbjct: 923 SMMGGQMQVQSEMGVGSTFSFTI 945



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 94/289 (32%), Gaps = 20/289 (6%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + L D++   +  +D+ G  L  N + ++  
Sbjct: 434 RLDKLVARRTE--RLKETTERREREYALLRSLLDAIPEAIVFKDKEGKYLGCNKAAERML 491

Query: 227 ETEGIVF--QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL- 283
                    Q++I  + K     IK       A              G       +++  
Sbjct: 492 GYTESELIGQESIKLTSKEQSVRIKAEDERVLAERTPLRYQEKVELAGKTVLLDTLKLPF 551

Query: 284 -----NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFHNRS 334
                   G   +  DV++E    +QL  + E  H    A+   ++D   +      N +
Sbjct: 552 YNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSKQIICNPA 611

Query: 335 FVELWEI-DLAFLATNPSNDELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           +  +       F A   + DEL+   + +R      + L+      +I    +  ++ + 
Sbjct: 612 YYSMLGYKSNEFPALVSTIDELIHPDDRIRVQEYREQYLDDPVGAFDIEFRMR-GKSGQY 670

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            W L  G+ +     + P+   +   +++T     E       +     
Sbjct: 671 HWLLSRGRVVEFTADNQPK-RMVGTHKDITRHKSNEVALLEAKQDAESA 718


>gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1120

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 127/723 (17%), Positives = 254/723 (35%), Gaps = 83/723 (11%)

Query: 116 ENWLKFHH----YIKLSKATEKLRKEGQSFDLVAETQNDCAIKI--EGRVSGSCAFLRIL 169
           + WL   H      +  +    L +  +  +L   T     + +    R     +  RI 
Sbjct: 269 DQWLDPRHRDYYIDQYERLVRHLTENFE-LELPLCTALGRRVSVNLSTRALWDTSG-RIT 326

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
                  +L+E      ++      F+ +F+     V   D  G I+  N +Y       
Sbjct: 327 HCIHTAVDLSEHNHIIAQVKESEKRFRAIFEHAGLAVAQGDIHGTIIKVNSAYANLL--- 383

Query: 230 GIVFQKAIGESRKLFKEEIK-----KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
           G    + +G S +              +   +  +++       + H +     +   + 
Sbjct: 384 GYSPDELVGRSLQSLTHPSDFPENLSLLHDLAKKKRSVYTLEKRILHKDGSWIWVESTVT 443

Query: 285 SFGEA--------GIAIDVSKEITVNDQLTHTYEILHNL---TVAIAIF-DQ-NRYLQFH 331
           +   A         +  D++        L  + +    L     A+ +  D  N  +   
Sbjct: 444 ALTNAMDEPEFLINMTRDITDRRRAEAALVESEQRYRQLFQRNKAVELLIDPVNGQIVDA 503

Query: 332 NRSFVELWEIDLAFLAT-NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           N +  + +      L   N +   +L                  ++ +    + +  H  
Sbjct: 504 NMAAADYYGYSCDTLRQMNIAQINILTR-------------DEIEQEMLRAEQENRNHFQ 550

Query: 391 TWH-LPNGQTLHVIVTSNP---RGGTIW--MFENLTVQVDLET-------KYNTLVKVQG 437
             H L +G+   V + S P   +G  +   +  ++T +  +E        +         
Sbjct: 551 FRHRLSSGEVRDVEIHSGPVEIQGRALLYSIVHDITERRRIEAALSHNRHQLEASHGRLI 610

Query: 438 ETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEEN------RLSPGTHIRNIAATCSRY 490
             +D L   V V  P  G I   N     +    +         +     +   A+ SR 
Sbjct: 611 TILDSLQSIVYVADPQTGEILYHNRYLFDIAGNLKGEREELLYPNKKRLSQGTPASRSRG 670

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
            N +  W+  + I   +     +    +  +    +            +    ++    +
Sbjct: 671 RNHAQSWEYCSPINHRWYS---AHSQPITWVDGRTVR-----------LEVATDINSLKQ 716

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E+AL +  E    A+  K+ F+  +S+++R+P+  ++G  +LL  S   SL+ +QS Y+
Sbjct: 717 SEQALLQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMVELLGES---SLDPEQSHYL 773

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  + + LL+L+NDILDL+ ++AG +KL      L + +  V   +  K  E  ++++
Sbjct: 774 KIIRRAGSTLLSLINDILDLSKIEAGQLKLELDDFTLAETVEHVMDILRHKASEKGLQLQ 833

Query: 671 VISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                        D QRL QI   +L NA+ F+ +GS  +    + +G + F V + G  
Sbjct: 834 THLHIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQGSVSLTLQQQPDGQYSFQVADTGPG 893

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I     K +F  FV       R   G GLGLSI    +    G + + S     +     
Sbjct: 894 IAPHRQKIIFEPFVQEESGTHRHFGGSGLGLSICHKLVTAMRGTLWLKSQLGHGSIFYFT 953

Query: 788 IPS 790
           +P 
Sbjct: 954 LPL 956



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 91/281 (32%), Gaps = 26/281 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
               +  Q    ++   +  V +AI   +R     N+    L E     L   P +  L 
Sbjct: 214 AHTQLKQQERLFHDYFAHGVVGMAITTPDRLFLHANKQLCVLLECQPKALLNTPIDQWL- 272

Query: 357 EFLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-------TSNP 408
                    P   ++     E +      +   +       G+ + V +       TS  
Sbjct: 273 --------DPRHRDYYIDQYERLVRHLTENFELELPLCTALGRRVSVNLSTRALWDTSGR 324

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               I    +L+    +  +     K      +H    VA     G I   N A+ +L  
Sbjct: 325 ITHCIHTAVDLSEHNHIIAQVKESEKRFRAIFEHAGLAVAQGDIHGTIIKVNSAYANLLG 384

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              + L  G  ++++        N S   DL     + +  E++ L    +  S   +E 
Sbjct: 385 YSPDEL-VGRSLQSLTHPSDFPENLSLLHDLAKKKRSVYTLEKRILH---KDGSWIWVES 440

Query: 529 SIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRK 564
           ++  L NA       +    ++TD  RAE AL E  +  R+
Sbjct: 441 TVTALTNAMDEPEFLINMTRDITDRRRAEAALVESEQRYRQ 481


>gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1041

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 107/512 (20%), Positives = 198/512 (38%), Gaps = 45/512 (8%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            +L      L+   + +++ DQ+  + F N+ F +        L  N         +  +
Sbjct: 403 HELEQLQLALNQHAI-VSVTDQDGNITFVNQKFCQTSGYTPNELIGNNH------RMLKS 455

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWH------LPNGQTLHVIVTSNP----RGG- 411
           ++ P     + W         ++ T   TWH        NG T  V  T  P     G  
Sbjct: 456 DQHPASFYQEMW---------ATITQGQTWHGQVKNRRKNGTTYWVSATIVPFLDGDGTP 506

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              I +  ++T Q   + +Y    +     +D+  EGV V    G+I++ NPA   ++  
Sbjct: 507 REYISVRTDVTAQKAAQERYRASEQRLRAILDNTHEGVVVMEASGQIEMLNPAAARIFGY 566

Query: 470 E--------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                       L P   + +I      +     G    A +       R    G+  LL
Sbjct: 567 TLADMPQPTIQWLLPEFPLTDILNDAHLHEGGGAGDVSHANLYREMAANRS--DGSRMLL 624

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             SV  + +    +A  +    ++T     E  L +  E   +A   K  F+  +S+ELR
Sbjct: 625 GVSVSSFHL--EESAVCVAVVRDITARKMEEIELKQAKEVAERASAAKTRFLSSMSHELR 682

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+GF  ++++     L+  Q +    I  +   LL L+ND+LDLA ++   + L 
Sbjct: 683 TPMNAILGFAQVMQSDPNEPLSESQRECTREIIQAGGHLLELINDVLDLAKIEENRISLK 742

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG---KLGSFVADRQRLLQIFSKILSNA 698
            + + + +++ E    +    +   IR+         +     ADR RL QI   + +N 
Sbjct: 743 MAPVHVQEVIREAVALVTPMANRKGIRLYHGMGEGVCERCDVQADRTRLKQILINLATNG 802

Query: 699 MDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           + ++ +G  V +     + G     V++ G  I       +F  F      G   G G+G
Sbjct: 803 VKYNREGGEVEISCRLAEAGRARIEVRDTGIGIAALKQGDIFEPFHRLVEDGTIEGTGIG 862

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSIV+  +   GG + + S +   +    ++P
Sbjct: 863 LSIVKRLVEAMGGTLGLESQEGQGSRFWFQLP 894



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/418 (11%), Positives = 134/418 (32%), Gaps = 52/418 (12%)

Query: 56  NETYSFLSEICDQLSK-YHSLLT-ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL 113
                 + +  + L + Y  LL      +  + + ++  P I           +   ++L
Sbjct: 267 QRARVLIMDDNEPLGRFYQMLLELAEMEVVYIREAEELLPAIQ----------RFKPEVL 316

Query: 114 SFENWLKFHHYIKLSKATEKLRKEGQ-SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD 172
             + ++   + ++++    +          L+ E      I  + + S S   ++ +   
Sbjct: 317 LLDLYMPDANGLEIAAVVRQSDSNADLPILLMVENNAGRRILDQTKESESF-LIKPVQPG 375

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFL---------VWHRDQAGDILWANISYK 223
            +   + E   + ++    +   +     L+ L         V   DQ G+I + N  + 
Sbjct: 376 LMVRAVIERVRQRRQTVGRVEYMRSALHELEQLQLALNQHAIVSVTDQDGNITFVNQKF- 434

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKK-----RMISSSALEKNFCETV-STLEHGNNKSY 277
              +T G    + IG + ++ K +         M ++    + +   V +  ++G     
Sbjct: 435 --CQTSGYTPNELIGNNHRMLKSDQHPASFYQEMWATITQGQTWHGQVKNRRKNGTTYWV 492

Query: 278 KIVRVLNSFGE------AGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRY 327
               V    G+        +  DV+ +    ++          IL N    + + + +  
Sbjct: 493 SATIVPFLDGDGTPREYISVRTDVTAQKAAQERYRASEQRLRAILDNTHEGVVVMEASGQ 552

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELL------EFLRSANKLPEQLNWKTWKENIFSV 381
           ++  N +   ++   LA +   P+   LL      + L  A+             N++  
Sbjct: 553 IEMLNPAAARIFGYTLADM-PQPTIQWLLPEFPLTDILNDAHLHEGGGAGDVSHANLYRE 611

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             ++ +      L    +   +  S      + +  ++T +   E +     +V    
Sbjct: 612 MAANRSDGSRMLLGVSVSSFHLEESA---VCVAVVRDITARKMEEIELKQAKEVAERA 666


>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 914

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 110/512 (21%), Positives = 201/512 (39%), Gaps = 53/512 (10%)

Query: 310 EILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           +    L       I+I +++   ++ N  F EL+      L   P+     E        
Sbjct: 5   DRFEQLTECSPFGISISNEDLVNEYVNPKFTELFGYT---LDDIPTKGIWFEKAYPDPAY 61

Query: 366 PEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVTSNP--RGGTIWMFENLTV 421
            E +  + W+ +     K+   +         +G    +         G  +  +EN T 
Sbjct: 62  RE-MVIQMWRADTERTIKTGTMDPRTFKVRCKDGSDKMIRFRPVDLGEGKQLLTYENRTD 120

Query: 422 QVDLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           ++  ET      +            I  + EGV     D R+   N  F    +      
Sbjct: 121 EIAAETALKASEEAARHEAAKLSSMISGMEEGVVFADSDNRVVEVNGYFCDFMQKTR--- 177

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVLEYSII 531
                  +I       ++  +  D     I  F     S     +     ++++L    I
Sbjct: 178 ------EDILGKKLEDFHSKEISDKIVGHIGEFRKNPHSKTVVKQRSIGDAETILRVQPI 231

Query: 532 PLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
              N     +L  +NVT+ V+A R           A   K  F+ ++S+E+R+P+  +IG
Sbjct: 232 YRENHYDGVLLNVINVTELVKARRE-------AEAASMAKGQFLANMSHEIRTPMNAVIG 284

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            T+LL  +    L+++Q +YVE + +++  LL L+NDILD + +++G ++       L  
Sbjct: 285 MTELLLGT---DLDTEQQEYVEIVKSAANGLLTLINDILDFSKIESGKLEFEKIAFDLRY 341

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           ++  V + +A       +      D       + D +RL Q+   +  NA+ F+ KG  V
Sbjct: 342 VIEGVGEMMAPNAQTKQLEFTCFVDPDCEVRLLGDPERLRQVLVNLTGNAVKFTEKG-NV 400

Query: 709 ILKAA---RDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
            + AA    ++G     F++ + G  IP+D  ++VFN F        R   G GLGLSI 
Sbjct: 401 DIHAAMIGEEDGMVLIRFAISDTGMGIPKDRQEAVFNSFTQVDGSSTRQFEGTGLGLSIS 460

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792
           +  + L GG + + S     +T    +P +K+
Sbjct: 461 KRLVALMGGRMGLDSEVGVGSTFWFTLPFAKQ 492



 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 66/236 (27%), Gaps = 14/236 (5%)

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS-SSALEKNFCETVSTLEHGNN 274
           +W   +Y      E ++        R +    +  R          +       ++ G  
Sbjct: 50  IWFEKAYPDPAYREMVIQMWRADTERTIKTGTMDPRTFKVRCKDGSDKMIRFRPVDLGEG 109

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           K             A  A+  S+E     +      ++  +   +   D +  +   N  
Sbjct: 110 KQLLTYENRTDEIAAETALKASEEAA-RHEAAKLSSMISGMEEGVVFADSDNRVVEVNGY 168

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
           F +  +     +         LE   S     E  +        F     S+T      +
Sbjct: 169 FCDFMQKTREDILGKK-----LEDFHSK----EISDKIVGHIGEFRKNPHSKTVVKQRSI 219

Query: 395 PNGQTL---HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            + +T+     I   N   G +    N+T  V    +       +G+ + ++S  +
Sbjct: 220 GDAETILRVQPIYRENHYDGVLLNVINVTELVKARREAEAASMAKGQFLANMSHEI 275


>gi|237715073|ref|ZP_04545554.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408978|ref|ZP_06085523.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229444906|gb|EEO50697.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353189|gb|EEZ02284.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 785

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/646 (18%), Positives = 259/646 (40%), Gaps = 47/646 (7%)

Query: 177 ELAETTLKCKKLSNHISVFKV-----------------LFDSLDFL--VWHRDQAGDILW 217
           +L     + ++L   +S+ +                  + DSL  +  V+++++ G  + 
Sbjct: 13  QLEALKKENEQLKKELSILRNENISNRPVSFKEKYAVRILDSLPDMLTVFNQNEVGIEVV 72

Query: 218 ANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           +N         N + +G+  ++ +        + I   M  + +             +G 
Sbjct: 73  SNEETNHVGISNKDFKGMYMREMVPPEA---YQNIHSNMRQAVSTGAVSTAHHELDFNGE 129

Query: 274 NKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           +  Y+  +  L+      +  D+++ +T   QL     +L  ++ +I    ++  L + N
Sbjct: 130 HHHYENRIFPLDEEYVLIMCRDITERVTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYAN 189

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSA--NKLPEQLNWKTWKENIFSVYKSSETHKD 390
           + F+E + +          +  +    + A   +L E  +         +  +  E  K+
Sbjct: 190 KQFIEEYGVTQQMGIQKIYDLPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGED-KE 248

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             H    Q    ++  N    T +  +++T  +  + +   L  +    ++++   + V 
Sbjct: 249 RMH----QVSTFLIRENNEELTWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVK 304

Query: 451 GP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            P  D R    N AF        ++    T      +         D  +L        D
Sbjct: 305 DPENDFRYLYWNKAFADHSGIPASKAIGHTDYEVFPSHGDAEKFRKDDLELLQT-HKRID 363

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKAD 566
            +   L  T +      L+ +++P+   + +      ++T+    E+ L +      ++D
Sbjct: 364 MQETYLSVTGKARIVQTLK-ALVPMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSD 422

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL          ++  Y   I+ +S ILL L+ND
Sbjct: 423 RLKSAFLANMSHEIRTPLNAIVGFSQLL---PAAETAEEKKLYSGIINQNSDILLQLIND 479

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ ++AG ++     + L ++   +      ++ E  + +   ++ +      D+ R
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNR 538

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+ +  L+NA  F+  G  + L   R + +    VK+ G  I  +    +F RFV   
Sbjct: 539 IMQVITNFLTNASKFTYAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLN 597

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              Q  G GLGLSI +  I   GG + ++S     +T    IP +E
Sbjct: 598 SFAQ--GTGLGLSICQMIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|167566984|ref|ZP_02359900.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis EO147]
          Length = 749

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 106/506 (20%), Positives = 197/506 (38%), Gaps = 39/506 (7%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
           +   +L +LT  + + D+   L + N +   L   D   +   P   ++     S     
Sbjct: 128 YYEALLQSLTQGVIVSDRRGMLTYMNPAAAALIGCDATAVRGLP-FRDVFNAYDSRG--- 183

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENL 419
            +    T  E +     S+   +      +G  + +   ++P         G + +  ++
Sbjct: 184 -ERARSTALEQVLRSGASATVERHWLASRDGPRVPIAEVASPLVDSAGDMNGAVLIVRDI 242

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +     E +     ++    ++   + +   G D RI   NPA R ++  +E        
Sbjct: 243 SG----ERERAAANRMLRRLVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDV 298

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              IA    R +            I + D       G+    +      S  P+ + +  
Sbjct: 299 AMLIAPRWRRRHPLPASLSDVYEPIENVDVLCARQDGSRLRAT-----LSASPVFDDRDA 353

Query: 540 L-----TFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPLTNI 587
                 T  +  +  R ER                  ++ +K+  +  VS+ELR+PL  I
Sbjct: 354 CVALSLTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVI 413

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L
Sbjct: 414 YGWIEVLRNPAGGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDL 470

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++N+V  ++ T      + + V    +      D +RL Q+ S +LSNA  F+ +G  
Sbjct: 471 VRIVNDVTGALGTAAQAEGLDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGR 530

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
           V +   R +      V + G  I  +    VF  F          RRG+GLGLSIV    
Sbjct: 531 VTVSLMRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIA 590

Query: 766 NLHGGHVSISSSDEG-VTTINCRIPS 790
            LHGG V ++S+ +   TT    +P+
Sbjct: 591 ELHGGKVEVASAGKRLGTTFTVTLPA 616



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 69/263 (26%), Gaps = 29/263 (11%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYK-----KNTETEGIVFQKAIGESRKLFKEEIKKR 251
            L  SL   V   D+ G + + N +         T   G+ F+          +      
Sbjct: 131 ALLQSLTQGVIVSDRRGMLTYMNPAAAALIGCDATAVRGLPFRDVFNAYDSRGERARSTA 190

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GEAGIAIDVSKEITVND 303
           +        +       L   +     I  V +          G   I  D+S E     
Sbjct: 191 LEQVLRSGASATVERHWLASRDGPRVPIAEVASPLVDSAGDMNGAVLIVRDISGERERAA 250

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
                  ++     AI     +R +   N +   ++  D            +    R  +
Sbjct: 251 ANRMLRRLVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRH 310

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMF 416
            LP          ++  VY+  E         +G  L   ++++P               
Sbjct: 311 PLP---------ASLSDVYEPIENVDVLCARQDGSRLRATLSASPVFDDRDACVALSLTL 361

Query: 417 ENLTVQVDLETKYNTLVKVQGET 439
            +   Q   E + +  ++   + 
Sbjct: 362 RDTGEQRRRERRTHHSLRGARDA 384



 Score = 41.5 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 93/347 (26%), Gaps = 50/347 (14%)

Query: 10  IGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQL 69
           +   +      S +I    T   +       +  L R R           +         
Sbjct: 74  LSDTVAYPGPLSARIVQLATFVIVNGAICAIVAALKRSRR-------MNEALRRREALAR 126

Query: 70  SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHY---IK 126
             Y +LL       IV D +     +       I    T    L F +    +       
Sbjct: 127 RYYEALLQSLTQGVIVSDRRGMLTYMNPAAAALIGCDATAVRGLPFRDVFNAYDSRGERA 186

Query: 127 LSKATEKLRKEGQSF-------------DLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
            S A E++ + G S               +         +   G ++G+   +R   + G
Sbjct: 187 RSTALEQVLRSGASATVERHWLASRDGPRVPIAEVASPLVDSAGDMNGAVLIVR--DISG 244

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
                A              + + L ++    +        I   N + ++     G   
Sbjct: 245 ERERAAANR-----------MLRRLVEASPDAIVGVGADRRITSWNPAARRMF---GYDE 290

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNN-KSYKIVRVLNSF 286
           Q A G    +      +R     A   +  E +  ++       G+  ++      +   
Sbjct: 291 QAARGRDVAMLIAPRWRRRHPLPASLSDVYEPIENVDVLCARQDGSRLRATLSASPVFDD 350

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
            +A +A+ ++      +Q        H+L  A    D  R     NR
Sbjct: 351 RDACVALSLT-LRDTGEQRRRERRTHHSLRGA---RDARRQADTSNR 393


>gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 998

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 112/669 (16%), Positives = 233/669 (34%), Gaps = 88/669 (13%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTETEGIVFQKAIGE 239
           + +  +     +      D+                L+ N SY       G+   + +G 
Sbjct: 81  SFQSAEQDPEENTMAPASDNRPLPFMLVHISSDQRYLFVNQSYANWL---GLDSSEMVGR 137

Query: 240 -SRKLFKEEIKKRMISSSALEKNFCETVS--TLEHGNNKSYKIVRVLNSFGEAGIAI--- 293
               +  EEI +  +       +  E +S  T   G+   Y+ + ++    E+G  I   
Sbjct: 138 HISDILPEEIYQTYLPLIQRVLSGEEVISCITFPSGDRLKYQDITLIPQLDESGSTIAYF 197

Query: 294 ----DVSKEITVNDQLTHTYE-----------------------------ILHNLTVAIA 320
               D++     +D+L  +                               I+++++  I 
Sbjct: 198 AVIKDITDHKLNDDELRRSKMELEERVAWRTKELELANSALERSRDYLDMIINSISDPIF 257

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + ++   L   N +F  L  +    L     +D             E  +    +     
Sbjct: 258 VINREHRLVLVNAAFCRLMSLPKEDLLGEEVHDFCFSR--------EMADDHWQRNEEVF 309

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNP----RGG--TIWMFENLTVQVDLETKYNTLVK 434
             +     ++      G    V++   P     G    + +  ++T     + +    ++
Sbjct: 310 NSRRETVVEEIHSYSPGAPATVLIKRIPIIDSDGKWLIVGIIRDITDIKKAQER----IR 365

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            Q + ++ +   V     +G I   N +  +L   +            +           
Sbjct: 366 FQADLLEQVHNTVIATDLEGNIIYWNKSAETLLGWKSEEAMGKNIAETVVPEW------- 418

Query: 495 DGWDLFAAIITSFDDERKSLQGTL--ELLSDSVLEYS--IIPLPNAQT-----MLTFVNV 545
            G D    +I+    +R +  G    +    S + +      + + +      +   V++
Sbjct: 419 -GLDKMNRVISDLIKDRGNWDGEFYFKKKDGSTVPFHQCFSSIRDGRGELIGLVGVAVDL 477

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+    E AL +      +A  +K+ F+ ++S+E+R+P+  IIG T LL       L  +
Sbjct: 478 TERKHIEEALKKAKREAEEAARVKSDFLANMSHEIRTPMNAIIGMTSLLLEE---PLTPE 534

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   +E I  +   LL ++NDILD + ++     L      +   + +    +       
Sbjct: 535 QRDCIEVIETNGDALLTVINDILDFSKMENNKTVLEECQFAIAQCVEDSLDLVGINAANK 594

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD--FIF 721
            + +    D  +    V D  +L Q+   +LSNA+ F+ KG  V  + A   +GD    F
Sbjct: 595 GLNLAYSIDKSVPEMIVGDPSKLKQVLGNLLSNAVKFTDKGEVVVTVSAQEVDGDNVIQF 654

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  IP++  K +F  F        R   G GLGL+I +  + +  G +   SS+ 
Sbjct: 655 EVRDTGIGIPQNRMKLLFLPFSQMEPSTSRLYGGTGLGLAISKRLVEMMKGRIWAESSEG 714

Query: 780 GVTTINCRI 788
             ++ +  I
Sbjct: 715 TGSSFHFTI 723



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 86/279 (30%), Gaps = 30/279 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E  L    L        ++ +S+   ++  ++   ++  N ++ +      +  +  +GE
Sbjct: 230 ELELANSALERSRDYLDMIINSISDPIFVINREHRLVLVNAAFCRLM---SLPKEDLLGE 286

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN------------KSYKIVRVLNSFG 287
               F    +         E+ F     T+    +            K   I+     + 
Sbjct: 287 EVHDFCFSREMADDHWQRNEEVFNSRRETVVEEIHSYSPGAPATVLIKRIPIIDSDGKWL 346

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFL 346
             GI  D++      +++    ++L  +   +   D    + + N+S   L        +
Sbjct: 347 IVGIIRDITDIKKAQERIRFQADLLEQVHNTVIATDLEGNIIYWNKSAETLLGWKSEEAM 406

Query: 347 ATNPSNDELLE-FLRSANKLPEQ--LNWKTWKENIFSVYKSSET---HKDTWHLPNGQTL 400
             N +   + E  L   N++      +   W    +   K   T   H+    + +G+  
Sbjct: 407 GKNIAETVVPEWGLDKMNRVISDLIKDRGNWDGEFYFKKKDGSTVPFHQCFSSIRDGRG- 465

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                     G + +  +LT +  +E       +   E 
Sbjct: 466 -------ELIGLVGVAVDLTERKHIEEALKKAKREAEEA 497


>gi|21229203|ref|NP_635125.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907772|gb|AAM32797.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 715

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 173/372 (46%), Gaps = 17/372 (4%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E +     + +   +D L+E       + +I  +N A          + + G  ++   
Sbjct: 348 AEQELKAQAREKKVLLDSLNELAVFVDTELKIIWANKAALEYMNMGLEK-AIGVCLKVAP 406

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----M 539
                     +  ++F         E+KS + T +     V     IP+P+ Q      +
Sbjct: 407 GISGPLVEHLNLEEIFTT------GEKKSGEYTAQ--DGRVWFAQAIPVPDEQGKIIGIL 458

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            T  +VT+   AER L  + +    A+  K+ F+ ++S+ELR+PL +IIGF+DLL     
Sbjct: 459 QTCRDVTERKEAERLL-HEKQIAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKVY 517

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G LN KQ++ V  IS S   LLNL+NDILDL+ V+AG M+L+Y    L   LN +K  ++
Sbjct: 518 GELNEKQARAVGNISRSGKHLLNLINDILDLSKVEAGKMELDYKEFELAGKLNAIKSLLS 577

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 NI I +  D  L    AD  R +QI   ++ NA+ FS +   V ++A R     
Sbjct: 578 PIADRKNIEIDIEVDKGLTHIRADEARFVQIMYNLMDNAIKFSHENGLVKVRAERKGDLV 637

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +VK+ G  I E+    +F  F           +G GLGLS+V+  +NLHGG V  +S 
Sbjct: 638 EITVKDKGIGIKEEDQCKLFKPFSQVDSFSSKTFQGTGLGLSLVKQIVNLHGGEVWFNSK 697

Query: 778 DEGVTTINCRIP 789
               +T    +P
Sbjct: 698 IGEGSTFAFTVP 709



 Score = 37.6 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 26/161 (16%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIF-DQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            E  +  Q      +L +L   +A+F D    + + N++ +E        +    +    
Sbjct: 348 AEQELKAQAREKKVLLDSLNE-LAVFVDTELKIIWANKAALEYMN-----MGLEKAIGVC 401

Query: 356 LEFLRS-ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---- 410
           L+     +  L E LN       +  ++ + E     +   +G+         P      
Sbjct: 402 LKVAPGISGPLVEHLN-------LEEIFTTGEKKSGEYTAQDGRVWFAQAIPVPDEQGKI 454

Query: 411 -GTIWMFENLTVQVDLETKYNT------LVKVQGETIDHLS 444
            G +    ++T + + E   +         + + E + ++S
Sbjct: 455 IGILQTCRDVTERKEAERLLHEKQIAEIANRTKSEFLANMS 495


>gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1959

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 132/829 (15%), Positives = 279/829 (33%), Gaps = 96/829 (11%)

Query: 38   IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV---WD------- 87
             + +I  I  R      + E+   +  + D +  + ++L  +  +  V   W+       
Sbjct: 641  FVSVIEDISLRKQTEAALAESVELVQAVEDSVLDHMAVLDADGNIVAVNAAWERFAHDNT 700

Query: 88   --GKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK-LRKEGQSFDLV 144
              G + +    G+   R  +      +       +      +       LR E Q++ + 
Sbjct: 701  DPGNEGSERSDGRPAPRTGVGDNYLRVCEAATGDEAAQARAIHDGIRAVLRGEAQAYAVD 760

Query: 145  AE--TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
                T           ++ +    R      +++++ +   + + L    +  + + +SL
Sbjct: 761  YTCHTPTRKRWF---HLAVTPLRTRSSGAVMVHTDITDRKREQELLRKSEARHRSMVNSL 817

Query: 203  DFLVWHRDQAGDILWANISYKKNTE----------TEGIVFQKAIGESRKLFKEEIKKRM 252
               +   D  G +   N + ++               G+   + +  + +         +
Sbjct: 818  SEGIIIFDARGHVQACNPAAERMMGLTQAQMRGPRETGLAMWRPVQPNGRPMPRSKLPLL 877

Query: 253  ISSSALEKNFCETVSTL-EHGNNKSY----KIVRVLNSFGEAGIAI---DVSKEITVNDQ 304
             + +  +      +  +   G  +      + VR   S    G+     D+S+      Q
Sbjct: 878  RTLTTGQPCHDVVLGGVTPDGKTRWLLANAEPVREPVSGELTGVVTSFTDISERFVAEQQ 937

Query: 305  LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
            L      +      I I D    +++ N+++  +       L  +  +      L  +  
Sbjct: 938  LRKLSLAVEQSPTGIVITDVQGNIEYVNQAYTLVSGYSRDELMGHNPS------LAQSGL 991

Query: 365  LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGT---IWMFE 417
             P Q     W           E         +G+T  V  T  P     G     + + E
Sbjct: 992  TPRQHYTDMWSTLAKGQSWQGEFIN---RRKSGETYDVFATVVPMRDGEGAVTHYLAISE 1048

Query: 418  NLTVQVDLETKYNT-------------------------LVKVQGETIDHLSEGVAVFGP 452
            ++T +  L  + +                            K      D+L + +  +  
Sbjct: 1049 DITERKRLSAELDQHRHHLEELVAERTQALQVAHQALADSEKFLRSLADNLPDRLTYWDT 1108

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            D R + +N AF       E +    +    +    S            +     F+  R 
Sbjct: 1109 DLRCRFANKAFLKFHDLSEEQAIGRSSRHLLMDQASASEWIVRMSAAMSGAPQHFERARL 1168

Query: 513  SLQGT--------LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
               G         +  L D V++ + + + +   +          +    LT   +    
Sbjct: 1169 GADGRSRTERVHQIPDLKDGVVQGAFVLVSDITGIKQAEQR--LTQLNEELTFARDRAEA 1226

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+  K+ F+ ++S+E+R+P+  IIG T LL      S ++ Q + +  ++ ++  LL+++
Sbjct: 1227 ANRAKSVFLANMSHEIRTPMNAIIGLTHLLLR---DSTDTVQQERLGQVTGAAHHLLDVI 1283

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            NDILDL+ +++G ++L  +   ++ LL+     +  +     + + + S     S   D 
Sbjct: 1284 NDILDLSKIESGKLELEQTDFPVDTLLSRACALVGERARAKGLELVLDSHRLPTSLRGDP 1343

Query: 685  QRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             RL Q    +LSNA+ F+ +GS V    I+    D     F V + G  +  +    +F 
Sbjct: 1344 TRLSQALVNLLSNAVKFTEQGSVVVRAEIVHEDPDGLTVRFEVDDTGIGMAPEQIGRLFA 1403

Query: 741  RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             F        RR  G GLGL I      L GG V +SS+    +     
Sbjct: 1404 AFEQADSSTTRRFGGTGLGLVITRHLAELMGGEVGVSSAPGVGSRFWFT 1452



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 15/189 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S+E      L     I  + T AI   D        NR    L  +    +  N  +   
Sbjct: 401 SQEHERLRALALLSAIADSSTDAIFAKDLQGRYLLFNREASRLTGMSADAVLGNDDHLLF 460

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---SNPRGGT 412
                     PEQ       +          T ++    P G+  ++       + +G  
Sbjct: 461 P---------PEQAAKVMANDAQVMRDGQVGTFEEELDTPEGRATYMATKGPLRDTQGQV 511

Query: 413 IWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           + MF    ++T +   E              +  + G++  G DGR    N     +   
Sbjct: 512 VGMFGISRDVTEKRRAEQALARSEARYRAAFEQAAVGMSETGLDGRWLHVNDRLCEITGY 571

Query: 470 EENRLSPGT 478
             + L    
Sbjct: 572 SRDELLQMR 580


>gi|295087809|emb|CBK69332.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 785

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/646 (18%), Positives = 259/646 (40%), Gaps = 47/646 (7%)

Query: 177 ELAETTLKCKKLSNHISVFKV-----------------LFDSLDFL--VWHRDQAGDILW 217
           +L     + ++L   +S+ +                  + DSL  +  V+++++ G  + 
Sbjct: 13  QLEALKKENEQLKKELSILRNENISNRPLSFKEKYAVRILDSLPDMLTVFNQNEVGIEVV 72

Query: 218 ANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           +N         N + +G+  ++ +        + I   M  + +             +G 
Sbjct: 73  SNEETNHVGISNKDFKGMYMREMVPPEA---YQNIHSNMRQAVSTGAVSTAHHELDFNGE 129

Query: 274 NKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           +  Y+  +  L+      +  D+++ +T   QL     +L  ++ +I    ++  L + N
Sbjct: 130 HHHYENRIFPLDEEYVLIMCRDITERVTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYAN 189

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSA--NKLPEQLNWKTWKENIFSVYKSSETHKD 390
           + F+E + +          +  +    + A   +L E  +         +  +  E  K+
Sbjct: 190 KQFIEEYGVTQQMGIQKIYDLPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGED-KE 248

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             H    Q    ++  N    T +  +++T  +  + +   L  +    ++++   + V 
Sbjct: 249 RMH----QVSTFLIRENNEELTWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVK 304

Query: 451 GP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            P  D R    N AF        ++    T      +         D  +L        D
Sbjct: 305 DPENDFRYLYWNKAFADHSGIPASKAIGHTDYEVFPSHGDAEKFRKDDLELLQT-HKRID 363

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKAD 566
            +   L  T +      L+ +++P+   + +      ++T+    E+ L +      ++D
Sbjct: 364 MQETYLSVTGKARIVQTLK-ALVPMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSD 422

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL          ++  Y   I+ +S ILL L+ND
Sbjct: 423 RLKSAFLANMSHEIRTPLNAIVGFSQLL---PAAETAEEKKLYSGIINQNSDILLQLIND 479

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ ++AG ++     + L ++   +      ++ E  + +   ++ +      D+ R
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNR 538

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+ +  L+NA  F+  G  + L   R + +    VK+ G  I  +    +F RFV   
Sbjct: 539 IMQVITNFLTNASKFTYAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLN 597

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              Q  G GLGLSI +  I   GG + ++S     +T    IP +E
Sbjct: 598 SFAQ--GTGLGLSICQMIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|90856146|gb|ABE01358.1| sensory histidine kinase/response regulator hybrid [Allochromatium
           vinosum]
          Length = 742

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 130/764 (17%), Positives = 279/764 (36%), Gaps = 67/764 (8%)

Query: 57  ETYSFLSEICDQLS-KYHSLLTENNCLTIVWDGKDETPEIIGQLH-QRIDIPQTDTDLLS 114
           +  S  +    +   ++ +L       TI+ D  D +     Q+   ++     +   L 
Sbjct: 5   KLRSIAATEAARQDVEFRTLFEVYPDATILIDPADGSTLEFNQVSCAQLGYTSEEFARLR 64

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQ-SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
             ++        ++    ++  +G+  F+     ++   I +   VS      R + L  
Sbjct: 65  ISDYEVQESAEDVAAHIRRVLTQGRDEFETQHRHKDGRVIDVSVAVSCLDLGERPVLLAV 124

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIV 232
           +  +++      ++        ++  ++    +W  D Q   ++W    ++         
Sbjct: 125 VR-DISRRKQDERQAHQAEERLQLATEAAKLGIWDYDIQQDRLIWDERMFQLYGLEPREF 183

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKSYK-IVRVLNSF 286
             + +  S  +  E +++      AL ++         +     G  ++ + + RV +  
Sbjct: 184 GYRFVDWSTLVLPESLQRVKADFQALVESGRPFDVKFQIRRPSDGEIRTLRGLARVTHDD 243

Query: 287 G-----EAGIAIDVSKEITVNDQLTHTYEILHNLTVA--IAIF--DQNRYLQFHNRSFVE 337
                   G+  D+++   V  ++    + L  L        +  D      + +     
Sbjct: 244 QGRAIRVVGVNEDITEFQAVQREILDREQRLQQLAEQSRTVTWEVDAQGRYTYLSPVAEL 303

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS---ETHKDTWHL 394
           +W      +       +L          PE    + ++E IF         + H +    
Sbjct: 304 VWGYTPDEIVGRRYFYDL---------HPEP-GREAFREAIFQAIAQQLKFQGHVNPIIR 353

Query: 395 PNGQTLHVIVTSNP---RGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            +G+ + V   + P     G +  +     ++T     +       +      +     V
Sbjct: 354 KDGRVIWVSTNAIPVTDDRGLLLGYRGSDVDITEAKYAKEALEAEKERFRGIFEKTGSAV 413

Query: 448 AVFGP-----DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           AV+ P     D      NPA   + +T    +     I      C     E    D+   
Sbjct: 414 AVYQPTDDSQDFIFTDYNPAAERIDRTTRQAV-----IGRCLTECFPAAIEMGLVDMLRR 468

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +  +   +        +    +  E +I  L + + +  + ++T+  RA+ A        
Sbjct: 469 VNLTGQTQYMPSAYYQDDRLQAWRENTIFKLSSGEVVAVYNDLTEIKRAQEA-------A 521

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A   K+ F+ ++S+E+R+P+  +IG +DLL  +    L++KQ  Y+  I  SS +LL 
Sbjct: 522 ERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLET---PLDAKQRDYLGKIRESSRLLLG 578

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFV 681
           ++NDILD + ++AG + L+     L+DLL++++     +    +I +        L    
Sbjct: 579 IINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEADARDIELIFDLAVSSLHRVE 638

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL Q+   +LSNA+ F+ +G  V+    L A   +    F V++ G  I  +    
Sbjct: 639 GDALRLRQVLINLLSNAVKFTEQGQVVLSIRQLDAGTASARLRFEVRDTGIGIAPEQQTR 698

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +F  F        RR  G GLGL I +  +   GG + + S+  
Sbjct: 699 LFKPFSQADSSTTRRYGGTGLGLVISQKLVEKMGGTLVLESTPG 742


>gi|56479140|ref|YP_160729.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56315183|emb|CAI09828.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 107/488 (21%), Positives = 206/488 (42%), Gaps = 26/488 (5%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTW 374
             A+ + D    +   N     ++    +        + +   +     +P  +     +
Sbjct: 14  PDALMMLDHAGKVLEWNDGAERMFGYSRS--------EAVGARIHELVTVPGSEAEQDHF 65

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKY 429
                   +   T +      +G  ++V+++     G      ++  +++T Q+ ++   
Sbjct: 66  IAETTECGRG--TFEALRRRNDGTLIYVVISGKVGQGAGELYLLFSEKDVT-QLKVQRDS 122

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L     E +D + +G+ +  P G I ++N     L+  + + L     I ++     R
Sbjct: 123 KSLESKFRELLDSMPDGIVIVNPTGHILIANRQAEWLFGYDRDELRA-RPIEDLLPQRFR 181

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             ++      F+   T        L G  +  ++  +E S+ PL   +T +    + D  
Sbjct: 182 SAHKGHRSHYFSTPRTRAMGAGLELYGLRKDGTEFPVEISLSPLKTEETPVVMSAIRDVS 241

Query: 550 RA---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                E+AL EKN  L  A+  K+ F+  +S+ELR+PL  +IGFT  L     G LN +Q
Sbjct: 242 ERRGFEQALQEKNLELLAANRAKDHFLASMSHELRTPLNAVIGFTGTLLMKLPGELNPEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ +E +  ++  LL L+ND+L+LA ++AG ++LN+  I    L+ E+  S+  +     
Sbjct: 302 TRQLEIVRNNARHLLALINDLLNLAKIEAGKIELNFEPIDCGALVGEIAASLRPQALSKG 361

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSV 723
           + + + +      F  DR+ L QI   ++ NA+ F+  GS  I     + G       SV
Sbjct: 362 LELILATQSDPIVFETDRRALSQIIINLVGNAIKFTLHGSVRIDLVLEEAGKKRRLALSV 421

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I E+   S+F  FV       +   G GLGL +      L GG +S +S+    
Sbjct: 422 SDTGPGIGEEELSSLFEAFVQGHASRMKGVEGTGLGLHLSRKLAVLLGGELSCTSTLGTG 481

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 482 SVFTLILP 489



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 81/253 (32%), Gaps = 23/253 (9%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEEIKKR-- 251
           ++ + D     +   D AG +L  N   ++    +        I E   +   E ++   
Sbjct: 7   YRWIADD-PDALMMLDHAGKVLEWNDGAERMFGYSRSEAVGARIHELVTVPGSEAEQDHF 65

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-----DVSKEITVNDQLT 306
           +  ++   +   E +     G    Y ++      G   + +     DV++     D  +
Sbjct: 66  IAETTECGRGTFEALRRRNDGT-LIYVVISGKVGQGAGELYLLFSEKDVTQLKVQRDSKS 124

Query: 307 ---HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
                 E+L ++   I I +   ++   NR    L+  D   L   P  D L +  RSA+
Sbjct: 125 LESKFRELLDSMPDGIVIVNPTGHILIANRQAEWLFGYDRDELRARPIEDLLPQRFRSAH 184

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-----TIWMFEN 418
           K      + T +             +      +G    V ++ +P         +    +
Sbjct: 185 KGHRSHYFSTPRTRAMGAGLELYGLR-----KDGTEFPVEISLSPLKTEETPVVMSAIRD 239

Query: 419 LTVQVDLETKYNT 431
           ++ +   E     
Sbjct: 240 VSERRGFEQALQE 252


>gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1002

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 138/796 (17%), Positives = 278/796 (34%), Gaps = 103/796 (12%)

Query: 65  ICDQLSKYHSLLTEN-NCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW-LKFH 122
           +  QL + + LL E      ++W       ++         + +T  + L+   W +   
Sbjct: 1   MSSQLDQCNRLLWEKCPVGLVLWRKNGALIDV--NPTYATILGRTVPETLNLNYWQITPE 58

Query: 123 HYIKLSKAT-EKLRKEG--QSFDLVAETQNDCAIKIEGRVS----GSCAFLR--ILSLDG 173
           +Y+   +   E+L + G  Q+++     ++   + ++             +   +  +  
Sbjct: 59  NYLASERTILEQLEQTGCHQAYEQEYLHKDGHLVPVKVSTVMIEKDGEKLMWSSVEDISN 118

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL----WANISYKKNTETE 229
           I     E     K L    + ++ L  +   ++W     G       W   + +   E E
Sbjct: 119 IRQTQKERQQSEKILKQSEARYRSLVTTNTQIIWVSSPEGICFELKDWIAYTGQTLAEAE 178

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFG 287
              +  A+    + +  E     +++ +  +         + GN + + +    V+   G
Sbjct: 179 NGGWIDAVHPDDRGYTGEAWGIAVANRSQYQIEYRIRG--KDGNYRYFWVWGAPVIEEDG 236

Query: 288 ----EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                 G   D+        +     E   +L  A      +  + +      E W I  
Sbjct: 237 NVREWIGTCTDIHDRKLAEAENQRLKERYRSLVTA------SSQIVWGTTP--EGWGISS 288

Query: 344 AFL------ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
             L        N +  E   +L   +      + + W   + +  +S    +      +G
Sbjct: 289 EMLTWIAYTGQNEAEVEGWGWLDPIHPDDRTRSLEAWNAAVAN--RSIYQTEYQLRGKDG 346

Query: 398 QTLHVIVTSNP----RGGT---IWMFENLTVQVDLETKYNTLVKVQGE------------ 438
              +  V   P     G     I    ++  +   E     L +                
Sbjct: 347 TYRYFSVCGVPVLKQDGSIQEWIGTCTDIHDRKLAEMALRQLNQQLEARVAERTAALQNT 406

Query: 439 ---------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                     +D+L++G+ V    G+I   NPAF ++     N L+              
Sbjct: 407 LAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTANTLNG------------- 453

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           +Y E   + L   I  +     +     + L  D + +     +              S 
Sbjct: 454 HYQELPIFGLADLIEHTRSHPGEVFTADVALAKDRIGQAVGTAIFKRTDTQEVAACFGSA 513

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSK 605
              R +T + E     D++K  F+  VS+ELR+PLT+++GF  +    L+      L+++
Sbjct: 514 LLIRDVTAEKE----IDKMKTDFISTVSHELRTPLTSVLGFASIIQEKLQKDVFPILSTE 569

Query: 606 QSQY----------VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +           +  I + +  L +L+ND+LD+A ++AG ++     I   +LL+   
Sbjct: 570 DRKLQKTIKRVGDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPIDPGELLDWAT 629

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S A     N +++    +  L   + DR RLLQ+   ++SNA+ F+  GS V  +  +D
Sbjct: 630 TSTAALFETNGLQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFTEFGS-VTCRVKQD 688

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                 SV + G  I  +    VF +F         + +G GLGL I +  +  HGG + 
Sbjct: 689 KDGVCISVIDTGVGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIW 748

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +  +  IP
Sbjct: 749 VESEPGHGSVFSFHIP 764



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 105/365 (28%), Gaps = 72/365 (19%)

Query: 38  IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIG 97
           +   +  I       K+  ++   L +      +Y SL+T N    I+W    E     G
Sbjct: 109 MWSSVEDISNIRQTQKERQQSEKILKQSEA---RYRSLVTTNTQ--IIWVSSPE-----G 158

Query: 98  QLHQRIDIPQTDTDLLSF---ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIK 154
              +  D        L+      W+   H              G+++ +    ++   I+
Sbjct: 159 ICFELKDWIAYTGQTLAEAENGGWIDAVHPDDRGY-------TGEAWGIAVANRSQYQIE 211

Query: 155 IEGRVSGSCA---FLR----------ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
              R         ++           +    G  +++ +  L   +       ++ L  +
Sbjct: 212 YRIRGKDGNYRYFWVWGAPVIEEDGNVREWIGTCTDIHDRKLAEAENQRLKERYRSLVTA 271

Query: 202 LDFLVWHRDQAG------DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
              +VW     G       + W   + +   E EG  +   I    +    E     +++
Sbjct: 272 SSQIVWGTTPEGWGISSEMLTWIAYTGQNEAEVEGWGWLDPIHPDDRTRSLEAWNAAVAN 331

Query: 256 SALEKNFCETVSTLEHGNNKSYKI--VRVLNSFGEA----GIAIDVSKEITVNDQLTHTY 309
            ++ +   +     + G  + + +  V VL   G      G   D+         L    
Sbjct: 332 RSIYQTEYQLRG--KDGTYRYFSVCGVPVLKQDGSIQEWIGTCTDIHDRKLAEMALRQLN 389

Query: 310 E-------------------------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           +                         IL NL   + + D    +  +N +F+ +  +   
Sbjct: 390 QQLEARVAERTAALQNTLAEAQGLNAILDNLADGLLVVDTTGQITHYNPAFLAMHGLTAN 449

Query: 345 FLATN 349
            L  +
Sbjct: 450 TLNGH 454


>gi|298481842|ref|ZP_07000032.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272064|gb|EFI13635.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 785

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/646 (18%), Positives = 259/646 (40%), Gaps = 47/646 (7%)

Query: 177 ELAETTLKCKKLSNHISVFKV-----------------LFDSLDFL--VWHRDQAGDILW 217
           +L     + ++L   +S+ +                  + DSL  +  V+++++ G  + 
Sbjct: 13  QLEALKKENEQLKKELSILRNENISNRPVSFKEKYAVRILDSLPDMLTVFNQNEVGIEVV 72

Query: 218 ANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           +N         N + +G+  ++ +        + I   M  + +             +G 
Sbjct: 73  SNEETNHVGISNKDFKGMYMREMVPPEA---YQNIHSNMRQAVSTGAVSTAHHELDFNGE 129

Query: 274 NKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           +  Y+  +  L+      +  D+++ +T   QL     +L  ++ +I    ++  L + N
Sbjct: 130 HHHYENRIFPLDEEYVLIMCRDITERVTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYAN 189

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSA--NKLPEQLNWKTWKENIFSVYKSSETHKD 390
           + F+E + +          +  +    + A   +L E  +         +  +  E  K+
Sbjct: 190 KQFIEEYGVTQQMGIQKIYDLPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGED-KE 248

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             H    Q    ++  N    T +  +++T  +  + +   L  +    ++++   + V 
Sbjct: 249 RMH----QVSTFLIRENNEELTWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVK 304

Query: 451 GP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            P  D R    N AF        ++    T      +         D  +L        D
Sbjct: 305 DPENDFRYLYWNKAFADHSGIPASKAIGHTDYEVFPSHGDAEKFRKDDLELLQT-HKRID 363

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKAD 566
            +   L  T +      L+ +++P+   +   +    ++T+    E+ L +      ++D
Sbjct: 364 MQETYLSVTGKARIVQTLK-ALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSD 422

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL          ++  Y   I+ +S ILL L+ND
Sbjct: 423 RLKSAFLANMSHEIRTPLNAIVGFSQLL---PAAETAEEKKLYSGIINQNSDILLQLIND 479

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ ++AG ++     + L ++   +      ++ E  + +   ++ +      D+ R
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNR 538

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+ +  L+NA  F+  G  + L   R + +    VK+ G  I  +    +F RFV   
Sbjct: 539 IMQVITNFLTNASKFTYAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLN 597

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              Q  G GLGLSI +  I   GG + ++S     +T    IP +E
Sbjct: 598 SFAQ--GTGLGLSICQMIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 957

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 107/561 (19%), Positives = 217/561 (38%), Gaps = 38/561 (6%)

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
           +  ++           ++     G  +  + ++  N   E  I+        +       
Sbjct: 262 RTVLLMGGGTVLLLAGSLLWRFLGIRRLNRQLQEANQRLETEISEHNQAVRLLKKNEQFQ 321

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND----ELLEFLRSANK 364
             ++  L   + + D +      N  F EL+    + +      D    EL +F R  ++
Sbjct: 322 KTLIETLPDLVWLKDPDGVYLGCNPRFEELYGAKQSEIIGKTDYDFVERELADFFRENDR 381

Query: 365 LPEQLNWKTWKENIFSVYKSS-----ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
                   T  E   +  +S      ET K      +G  L          G + +  ++
Sbjct: 382 KAAAAGKPTVNEEWLTFTESGYRGLFETIKTPMFDTDGTLL----------GVLGVARDI 431

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGT 478
           + +           +          + V +    DG     N  F ++   +   +   +
Sbjct: 432 SERARAYELLRLSEEKFATAFRVSPDSVNLNRLSDGTYLEVNEGFTAIAGYQPEEVLGKS 491

Query: 479 HIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            +  NI A  +               + + + + +   G+L       +   II +   Q
Sbjct: 492 SLELNIWANPADRLQLVQELQQ-HGFVRNLEAQFRCKDGSLIT---GQMSARIITVNGEQ 547

Query: 538 TM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +     ++++  R E  L +  +A   A+  K+ F+ ++S+E+R+P+  +IG   LL+ 
Sbjct: 548 CLLNITRDISERKRYEEELQQARQAAEAANRAKSEFLANMSHEIRTPMNGVIGMVQLLQF 607

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   LNS+Q +Y++ +  S+  LL+L+NDILDL+ ++AG + L Y+   L   + EV  
Sbjct: 608 TR---LNSEQQEYLQCLETSAQNLLSLLNDILDLSKIEAGKISLEYADFSLRHSIQEVVT 664

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +  +++H+  +++       +      D  RL QI   +L NA+ F++ GS + + A   
Sbjct: 665 TQISQIHQKRLKLTTSLADDIPEILHGDPLRLKQILLNLLGNAIKFTAAGS-ITIAARIT 723

Query: 716 NGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           +          SV + G  +  +  + +F  F    +   RR  G GLGL+I      L 
Sbjct: 724 DQQNGTLTICLSVSDTGIGMTPEALQRIFAPFEQADNSTTRRFGGTGLGLTICRRLAELM 783

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +   SSD   ++    +P
Sbjct: 784 GGRIWAESSDGHGSSFFVELP 804



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 93/275 (33%), Gaps = 27/275 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + +E++E     + L  +    K L ++L  LVW +D  G  L  N  +++    +    
Sbjct: 300 LETEISEHNQAVRLLKKNEQFQKTLIETLPDLVWLKDPDGVYLGCNPRFEELYGAKQSEI 359

Query: 234 QKAIG------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL---- 283
                      E    F+E  +K   +           ++  E G    ++ ++      
Sbjct: 360 IGKTDYDFVERELADFFRENDRKAAAAGKPTVNEEW--LTFTESGYRGLFETIKTPMFDT 417

Query: 284 --NSFGEAGIAIDVSKEITVNDQLTHTYEILHNL------TVAIAIFDQNRYLQFHNRSF 335
                G  G+A D+S+     + L  + E           +V +       YL+  N  F
Sbjct: 418 DGTLLGVLGVARDISERARAYELLRLSEEKFATAFRVSPDSVNLNRLSDGTYLE-VNEGF 476

Query: 336 VELWEIDLAFLATNPSND-ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
             +       +    S +  +        +L ++L    +  N+ + ++  +       L
Sbjct: 477 TAIAGYQPEEVLGKSSLELNIWANPADRLQLVQELQQHGFVRNLEAQFRCKDG-----SL 531

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
             GQ    I+T N     + +  +++ +   E + 
Sbjct: 532 ITGQMSARIITVNGEQCLLNITRDISERKRYEEEL 566


>gi|254415056|ref|ZP_05028819.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178203|gb|EDX73204.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 2724

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/661 (18%), Positives = 240/661 (36%), Gaps = 62/661 (9%)

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
             +  +   +++       L+   + F  + +     +   D    I+  N   ++     
Sbjct: 1855 EVIALTRNISDRKQAELALAASQARFAGILEIAKDGIISVDSEQRIILFNQGAEQMF--- 1911

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALE-----------KNFCETVSTLEHGNNKSYK 278
            G    + +G+S  L        +                      E      +G     +
Sbjct: 1912 GYKADQILGQSLDLLLPPRAATIHRQHVTNFAQYAGKARQMGERNELFGRRRNGTEFPME 1971

Query: 279  IV----RVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQF 330
                   +        I  D+S        L+   EIL     ++ + +  + +   ++F
Sbjct: 1972 ASISKLDINGEIICTAILRDISDRKQAELALSQQKEILQTIFDSIPILLCFYKEGVEVEF 2031

Query: 331  HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS-VYKSSETHK 389
             N +  +     LA +             R  + + E      ++ ++   + K+  T +
Sbjct: 2032 INPALEQTLGWSLAEM-------------RDIDIMAEIYPDPDYRTSVLDFMLKADGTWQ 2078

Query: 390  D-TWHLPNGQTLHVIVT--SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            D       G+ L +       P G T+ + +++T +   E              D+L  G
Sbjct: 2079 DFQTQTRRGEVLEITWANIRLPDGSTVGIGKDITERKQAELAIQEREYQLRTLADNLPNG 2138

Query: 447  VA---VFGPDGRIKLSNPAF---RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            +    V  P+G+   S       R +    E  +   + + N+     R  N     + +
Sbjct: 2139 LIYQLVREPNGQFYFSYITAGIERLVGIKPEVIIQDASVLFNLIVDEDRQLNYQLNEESW 2198

Query: 501  AAI-ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFVNVTDSVRAERALTE 557
              + I      +++  G +     S +  +   L + +T+     +++T+  + E  L +
Sbjct: 2199 RNLSIYEMQMRKRTPSGDIRW---SYVRSAPRRLVDGRTVWDGIEIDITELKKTEIELAQ 2255

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              +A   A+  K++F+  +S+ELR+PL  I+G+  +LKT+   +L  KQ   +E I    
Sbjct: 2256 AKDAAEAANRAKSAFLASMSHELRTPLNGILGYAQILKTN--SNLTQKQKDGIEIIHQCG 2313

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL L+NDILDL+ V+AG ++L          L  + +    K  + +I         +
Sbjct: 2314 EHLLTLINDILDLSKVEAGKLELYPEDFHFPSFLVGLCEIFRLKAIQKDITFNYNPPTHI 2373

Query: 678  GSFV-ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIP 731
               V  D +RL QI   +LSNA+ F+  G+      +I K    N    F V++ G  + 
Sbjct: 2374 PQIVHGDEKRLRQILMNLLSNAVKFTDTGTVTFTVNIIHKGQMTNDKIRFQVEDTGIGMS 2433

Query: 732  EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--I 788
             +  + +F  F           G GLGL+I +  I L G  + + S     +       +
Sbjct: 2434 AEDLEKIFLPFEQIKETSRHHEGTGLGLAITKKLIALMGSQIRVESHPGVGSKFWFEVDL 2493

Query: 789  P 789
            P
Sbjct: 2494 P 2494



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/490 (14%), Positives = 149/490 (30%), Gaps = 61/490 (12%)

Query: 116  ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGR---VSGSCAFLR----- 167
            E+W++  H          L    Q F   +  +    I+  G    +    + +R     
Sbjct: 915  ESWIEAVHPEDRPLVLNSL---NQQFQGHSVKREYRIIQPNGEQRWIIADVSVVRNEAGE 971

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA----NIS-- 221
             L   G+  ++ E      +L +     + L  +   +++     GD        N S  
Sbjct: 972  PLRFVGVAEDITERKQAELELQSIKERLQYLLTASPAVIFSSQIEGDYSATFMSENASTI 1031

Query: 222  --YKKNTETEGIVFQ-KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
              Y          F  + +    K    E+  ++ +       +       +HG+   + 
Sbjct: 1032 LGYNAEKFIHNAQFWCERVHPEDKAVMNEVIPQLFAQGHCTYEYRF-----QHGDGTYHW 1086

Query: 279  IV--------RVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNR 326
            +                  G  ID+++     + L         I+      I   D N 
Sbjct: 1087 LTTQLRLVQDETGTPIECVGYLIDITERKQAEESLREQEEEYRRIVETADEGIWSIDMNG 1146

Query: 327  YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
               F N    ++    +  +   P    +  F+  A K     N +  ++ I       E
Sbjct: 1147 NTIFVNPKMAQMLGCSVEQMLGQP----MFAFMDEAGKAMATRNLERRRQGIH------E 1196

Query: 387  THKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             H+  +   +G  L  ++ + P         GT+ M  ++T +   E       ++    
Sbjct: 1197 KHEFKFRRNDGSDLWTLIATTPICDTSGQCTGTLGMITDITDRKRAEDALRYSEQLYRTM 1256

Query: 440  IDHLSEG-VAVFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
              +   G + +F  + R  +++              +  G  I  + +       E+   
Sbjct: 1257 AKNFPNGAIFLFDHELRYLVADGQGLGRSGSGYSRNILEGQTIWEVLSEQECAVVETLYR 1316

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            +  A I  + +   ++    ++  +       II       M+   ++T+  + E AL E
Sbjct: 1317 EALAGIEKTLEMPYRNRIQLVQTRAVRDEAGEIIA-----GMVVAQDITERKQTEEALRE 1371

Query: 558  KNEALRKADE 567
                LR   E
Sbjct: 1372 SEAFLRSIYE 1381



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 76/576 (13%), Positives = 173/576 (30%), Gaps = 99/576 (17%)

Query: 56   NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
                + L E+     +   LLT +  +           +I G       + +  + +L +
Sbjct: 984  ERKQAEL-ELQSIKERLQYLLTASPAVIFS-------SQIEGDYS-ATFMSENASTILGY 1034

Query: 116  EN---------W---LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSC 163
                       W   +       +++   +L  +G        T        +G      
Sbjct: 1035 NAEKFIHNAQFWCERVHPEDKAVMNEVIPQLFAQGHC------TYEYRFQHGDGTYHWLT 1088

Query: 164  AFLRIL--------SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
              LR++           G   ++ E     + L      ++ + ++ D  +W  D  G+ 
Sbjct: 1089 TQLRLVQDETGTPIECVGYLIDITERKQAEESLREQEEEYRRIVETADEGIWSIDMNGNT 1148

Query: 216  LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-----TLE 270
            ++ N    K  +  G   ++ +G+    F +E  K M + +   +               
Sbjct: 1149 IFVNP---KMAQMLGCSVEQMLGQPMFAFMDEAGKAMATRNLERRRQGIHEKHEFKFRRN 1205

Query: 271  HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV-----AI 319
             G++    I             G  G+  D++      D L ++ ++   +       AI
Sbjct: 1206 DGSDLWTLIATTPICDTSGQCTGTLGMITDITDRKRAEDALRYSEQLYRTMAKNFPNGAI 1265

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             +FD                  D   L  + S           N L  Q  W+   E   
Sbjct: 1266 FLFDHELRYLVA----------DGQGLGRSGSGYS-------RNILEGQTIWEVLSEQEC 1308

Query: 380  SVYK-----SSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETK 428
            +V +     +    + T  +P    + ++ T   R         + + +++T +   E  
Sbjct: 1309 AVVETLYREALAGIEKTLEMPYRNRIQLVQTRAVRDEAGEIIAGMVVAQDITERKQTEEA 1368

Query: 429  YNTLVKVQGETIDHLSEGVAVFG--PDGRIKLS--NPAFRSLWKTEENRLSPGTHIRNIA 484
                        + +   V +     +G  +    NP    +     + +   T    + 
Sbjct: 1369 LRESEAFLRSIYEGIEAAVFIVDVLENGEFRYVSINPTHERMSGLRNSEIKGKTLHEVLT 1428

Query: 485  ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLPNA-----QT 538
               +    +     L A        E+ + + +L++   DS    ++ PL ++     + 
Sbjct: 1429 PDIAEAVCQRYRRCLAAG-------EKITYEHSLQINGKDSWWISNLTPLKDSNSRIYRL 1481

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            + T +N++D  + E  L E    + K        + 
Sbjct: 1482 IGTALNISDRKQIELQLKENQRFIEKIINASPQLLY 1517



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 61/440 (13%), Positives = 133/440 (30%), Gaps = 48/440 (10%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYK-------KN 225
            +   + E     + L    + F+ +  ++    + R    G+ L+ + +Y+       ++
Sbjct: 850  VTQNITERKQFEQALIRSENRFQEIAKTVSQFFFVRSANSGEFLYVSPAYETIWGRSCES 909

Query: 226  TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVL 283
                   + +A+    +        +     ++++ +        +G  +     +  V 
Sbjct: 910  LYQHPESWIEAVHPEDRPLVLNSLNQQFQGHSVKREYRIIQP---NGEQRWIIADVSVVR 966

Query: 284  NSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTVA--IAIFDQ----NRYLQFHNR 333
            N  GE     G+A D+++      +L    E L  L  A    IF      +    F + 
Sbjct: 967  NEAGEPLRFVGVAEDITERKQAELELQSIKERLQYLLTASPAVIFSSQIEGDYSATFMSE 1026

Query: 334  SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            +   +   +      N       E +   +K                 Y+    H D  +
Sbjct: 1027 NASTILGYNAEKFIHNAQF--WCERVHPEDKAVMNEVIPQLFAQGHCTYEYRFQHGDGTY 1084

Query: 394  LPNGQTLHVI--VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
                  L ++   T  P     ++  ++T +   E       +     ++   EG+    
Sbjct: 1085 HWLTTQLRLVQDETGTPIECVGYLI-DITERKQAEESLREQEEEYRRIVETADEGIWSID 1143

Query: 452  PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             +G     NP    +      ++  G  +        +     +       I      E+
Sbjct: 1144 MNGNTIFVNPKMAQMLGCSVEQML-GQPMFAFMDEAGKAMATRNLERRRQGI-----HEK 1197

Query: 512  KSLQGTLELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
               +      SD     +  P+ +       T+    ++TD  RAE AL    +  R   
Sbjct: 1198 HEFKFRRNDGSDLWTLIATTPICDTSGQCTGTLGMITDITDRKRAEDALRYSEQLYRTM- 1256

Query: 567  EIKN-----SFVQHVSYELR 581
              KN      F+    +ELR
Sbjct: 1257 -AKNFPNGAIFLFD--HELR 1273



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 134/408 (32%), Gaps = 30/408 (7%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-NTETEGI 231
            G   ++ E       L  +  +     D++       D+       N +Y   N +    
Sbjct: 1616 GTSQDITELKEAEDALRRYERIVSSTTDAIS----LVDRDYTYQIVNQAYLDWNQKHYDE 1671

Query: 232  VFQKAIGE--SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------ 283
            +   ++      ++F + IK  +    A E    +       G  +   +  +       
Sbjct: 1672 IVGHSVSNLLGEEVFVQVIKPNLDRCLAGETINYQEWFDYPGGKQEFISVTYIPYVDANQ 1731

Query: 284  NSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRY-LQFHNRSFVEL 338
               G      ++++   V  QL  T +    I       +     +   L F  +++  L
Sbjct: 1732 QISGVVVNCRNLTELKQVETQLRQTNQEMQAIFDAFPDILFRLAADGTILDFRTKNYQAL 1791

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            +    +F   N    E+     +  KL   +      +++ SV  S   +++       Q
Sbjct: 1792 YTSPDSF--VNHKIQEVFPT-DAGEKLYAAIQQVLTTKSLVSVEYSLPLNQEE------Q 1842

Query: 399  TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
                 +    +   I +  N++ +   E             ++   +G+     + RI L
Sbjct: 1843 YFEARMVPLNQNEVIALTRNISDRKQAELALAASQARFAGILEIAKDGIISVDSEQRIIL 1902

Query: 459  SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
             N     ++  + +++   +    +    +  + +        A       ER  L G  
Sbjct: 1903 FNQGAEQMFGYKADQILGQSLDLLLPPRAATIHRQHVTNFAQYAGKARQMGERNELFGRR 1962

Query: 519  ELLSDSVLEYSIIPLP-NAQTMLTF--VNVTDSVRAERALTEKNEALR 563
               ++  +E SI  L  N + + T    +++D  +AE AL+++ E L+
Sbjct: 1963 RNGTEFPMEASISKLDINGEIICTAILRDISDRKQAELALSQQKEILQ 2010



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/484 (12%), Positives = 138/484 (28%), Gaps = 91/484 (18%)

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           G   G  A    +    +     +     K LS        + +++   +   D  G + 
Sbjct: 423 GDEVGQLANSFNIMAAQLRQFFTQLQASNKALSQSEHNLTQILEAIPVGISVHDVTGQLT 482

Query: 217 WANISYKKNTE----------------------------TEGIVFQKAIGESRKLFKE-- 246
           +AN   K+  E                             E +   +A+   + +  +  
Sbjct: 483 YANQKSKELLEIETLPDAKIEDLAITYQIYQSDTQQLYPVENLPAVRALNREQTIVDDLE 542

Query: 247 -EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG---------EAGIAIDVS 296
              + ++I   A      +  +T+       + I     +           EA +A   +
Sbjct: 543 IHQRNQIIPVEAYGTPLLDKNATILGAIVAFFDITERKQAEALQRNYHRILEANVAQRTA 602

Query: 297 KEITVNDQL------------------THTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           +    N++L                       I   +   + + D  + +         L
Sbjct: 603 ELRDANERLKGEMAERQLLEGKLYSSEQQIRTIFEAINDIVLMIDAEKNINVAPTKRTYL 662

Query: 339 WEIDLAFLATNPSNDELLEFLRSAN-KLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-- 395
                     +P +  LL  +     + PE     +W   +  V  S E     ++L   
Sbjct: 663 ----------SPEDSHLLNLIVEQFFQDPED----SWFAQVQQVLDSQEPLYFDYNLTLD 708

Query: 396 -NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VAVFGPD 453
            +   L + +        IW+  +++ +  +E    T   +      +   G + +F P+
Sbjct: 709 NHEMWLTISIAPLSDQAVIWVARDISDRKQVEDALRTSEYLYRAMARNFPNGAMFLFDPN 768

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R  +++    +        L  G  +  +    +    E       A +  +       
Sbjct: 769 LRYLVADGQALTEAGHRGEALL-GKTLWEVLPPENCALVEPLYHAALAGVEQT------- 820

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIK 569
               +     + L  S     NA T    M+   N+T+  + E+AL       ++  +  
Sbjct: 821 --QEISFGDFTYLCQSTAVRNNAGTIIAGMVVTQNITERKQFEQALIRSENRFQEIAKTV 878

Query: 570 NSFV 573
           + F 
Sbjct: 879 SQFF 882



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/436 (14%), Positives = 134/436 (30%), Gaps = 22/436 (5%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG----IYSELAETTLKCKKLSNHISVFK 196
            FD+    Q +   +   R+  +    R   L      +  E+AE  L   KL +     +
Sbjct: 574  FDITERKQAEALQRNYHRILEANVAQRTAELRDANERLKGEMAERQLLEGKLYSSEQQIR 633

Query: 197  VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
             +F++++ +V   D   +I  A       +  +  +    + +  +  ++    ++    
Sbjct: 634  TIFEAINDIVLMIDAEKNINVAPTKRTYLSPEDSHLLNLIVEQFFQDPEDSWFAQVQQVL 693

Query: 257  ALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL 315
              ++      +     +     I +  L+      +A D+S    V D L  +  +   +
Sbjct: 694  DSQEPLYFDYNLTLDNHEMWLTISIAPLSDQAVIWVARDISDRKQVEDALRTSEYLYRAM 753

Query: 316  T-----VAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
                   A+ +FD N RYL    ++  E      A L        L E L   N    + 
Sbjct: 754  ARNFPNGAMFLFDPNLRYLVADGQALTEAGHRGEALLGK-----TLWEVLPPENCALVEP 808

Query: 370  NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
             +      +    + S            Q+  V   +      + + +N+T +   E   
Sbjct: 809  LYHAALAGVEQTQEISFGDFTYLC----QSTAVRNNAGTIIAGMVVTQNITERKQFEQAL 864

Query: 430  NTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWK-TEENRLSPGTHIRNIAATC 487
                    E    +S+   V   + G     +PA+ ++W  + E+               
Sbjct: 865  IRSENRFQEIAKTVSQFFFVRSANSGEFLYVSPAYETIWGRSCESLYQHPESWIEAVHPE 924

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
             R    +     F       +       G    +   V           + +    ++T+
Sbjct: 925  DRPLVLNSLNQQFQGHSVKREYRIIQPNGEQRWIIADVSVVRNEAGEPLRFVGVAEDITE 984

Query: 548  SVRAERALTEKNEALR 563
              +AE  L    E L+
Sbjct: 985  RKQAELELQSIKERLQ 1000


>gi|268326254|emb|CBH39842.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1037

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/679 (17%), Positives = 254/679 (37%), Gaps = 64/679 (9%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            FD     ++   ++  G      A      +   ++E          L+       VL  
Sbjct: 393  FDYKVAIKSGDELEALGDAVNKMA----QRIKNSFTETVIKKELENTLNTMTDTLIVL-- 446

Query: 201  SLDFLVWHRDQAGDILWANISYKKN-----TETEGIVFQKAIGESRKLFKEEIKKRMISS 255
                     D  GDI+ AN +          E  G+ F K +G+ ++  + +I+ + +  
Sbjct: 447  ---------DPDGDIIKANKAAFNLLGYSEAELIGMSFDKIVGKPKQEEEGKIELKKLIR 497

Query: 256  SALEKNFCETVSTLEHGNNKS---YKIVRVLNSFGE----AGIAIDVSKEITVNDQLTHT 308
                       + L     +    +    + N  GE       A D+++     + L  +
Sbjct: 498  EPEASITNLETTYLTKDRREIPVNFAASIMKNENGELQGIVCNACDITERKQAEEALRES 557

Query: 309  YEILHNLT----VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
             E    ++     +I I D+       N +   L+ +  + +    ++D+L +   +++ 
Sbjct: 558  EERFRAISETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGK-TDDDLFDKEAASHI 616

Query: 365  LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENL 419
               +++    K        + +     +        HVI            G   +  ++
Sbjct: 617  R--EVDSHVLKGETVEEEHTKKIKGVLFS------FHVIKVPMRDNSGEVIGLCGIARDI 668

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL----- 474
            T +   E       +      + + +  A    DG I    P+ +S        +     
Sbjct: 669  TERKRAEEALRESEERYRSIFESIQDVYAAVAMDGTILEITPSIQSFSGYAPEEVLGRSL 728

Query: 475  -SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                 +    AA   R        D +  ++        +   T+++++D+    S  P+
Sbjct: 729  AEFYVYPEQRAALLERLRLGGSVND-YEVVLRHKTGRAVTSSFTVKVVTDA----SGTPV 783

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                 + T  +VT+  R +       + L + D++K +F+    +E+RSPL  I+G+  L
Sbjct: 784  K---IVGTMRDVTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASL 840

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+    G LN KQ +YV  I  S++ L  L+  +L++  ++AG  +L+   + + +++N 
Sbjct: 841  LEQ---GELNEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNN 897

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            V +    +       I  +   +      D+Q++  IF  ++SNA+ ++ +   + +   
Sbjct: 898  VLERFGPQADAKKQTISAVV-PEGTEVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVVE 956

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHV 772
                     V + G  IP++     F RF        ++ G+GLGL+IV+ ++ LHGG V
Sbjct: 957  DRKEGIRVCVADTGIGIPKEQLPRAFERFFMADTSLRRKGGLGLGLAIVKGYVKLHGGEV 1016

Query: 773  SISSSDEGVTTINCRIPSK 791
             ++S     +     +P +
Sbjct: 1017 WVTSELGKGSKFWFTLPKR 1035


>gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 1042

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 111/659 (16%), Positives = 221/659 (33%), Gaps = 47/659 (7%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
             A   +++L     E        ++    ++           LV+  D     +  N  
Sbjct: 168 GIALANLIALAVERDERIRAEEALRESEQRLATLVAYAPDA-ILVFDVDAD-RYIQVNKQ 225

Query: 222 YK--------KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
                        + +            +L     ++ +  +        E +     G 
Sbjct: 226 AALLFGYDCESLLQIDPTRLSPERQPDGRLSSVARREYLDVALRGGTPVFEWIHQNVGGE 285

Query: 274 NKSYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQN 325
               +I  V           G  ID+ +       L  + + L  +      AI + D +
Sbjct: 286 LIPCEIRLVRLPHARCRLVRGSIIDIGERKRTEQALRASEQRLSTMLAYSPDAITLLDVD 345

Query: 326 R-YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE-----QLNWKTWKENIF 379
                  N     L+  +   L            L      PE     + +    +E + 
Sbjct: 346 TLRFVEVNEQAARLYGYERTTLL----------RLGPVELSPECQPDGRRSADAAREKVL 395

Query: 380 SVYKSSETHKDTWHLPNGQTL---HVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLV 433
                     +  HL     L    V +   P      +     +++ +   E       
Sbjct: 396 EALDGGVPVFEWTHLNAAGALFLCEVRLVRLPDASRRLVRGSIIDISERKRAEAALRESE 455

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
                 +D   + +      GRI   NPA    +  +   +        I     R  + 
Sbjct: 456 ARIRGILDASMDCIISIDHAGRIIEFNPASERTFGYQRKHVIGRELAELIIPPSLRDAHR 515

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT--FVNVTDSVRA 551
                  A         R  +Q      ++  +E S+ P+     ++T    ++T S R 
Sbjct: 516 RGFARYLATGEGPVLGRRIEVQAQRSDGTEFPVEISVTPILGGPKLVTATVRDITASKRT 575

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  L E  EA  KA   K+ F+  +S+ELR+PL +++G+  LL+  +   L+ +Q + + 
Sbjct: 576 QEELHEAKEAAEKASRAKSEFLASMSHELRTPLNSVLGYAQLLRCEE--ELSQRQRKALN 633

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   L  L+ +ILD+A ++AG + +    + L+ +L+ + +   ++     +    
Sbjct: 634 VIQQSGEHLQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSRAQSKGLAFTF 693

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                + + V AD +RL Q+   +L NA+ ++  G  V L+         F V++ G  I
Sbjct: 694 APGADVPAVVSADERRLCQVLMNLLDNAIKYTRHGEVV-LRTMMHERAVCFVVEDTGLGI 752

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F+ F           G GLGL+I +  ++L GG + ++S     +     +
Sbjct: 753 RPEHLSEIFDVFHQVRDPSMTVEGTGLGLAISKRLVHLMGGELQVASKPHEGSRFWFEL 811


>gi|284038022|ref|YP_003387952.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283817315|gb|ADB39153.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 939

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 109/669 (16%), Positives = 247/669 (36%), Gaps = 65/669 (9%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF-----------LVWHRDQAGDILW 217
           LS D ++ E      + K L + I   +     ++             VW  +     + 
Sbjct: 14  LSTDSLHQENERLRAETKLLKDTIRQQQAELRRIEQRWKFALEGFGDAVWELNLQTREII 73

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS-------SSALEKNFCETVSTLE 270
            +  Y++        F   +         +  + +         S   + +  E     +
Sbjct: 74  RSARYREILGYTLEEFPDIVEVWMDKLHPQDWQNLTDPDMSLYLSGVRKSHVTEYRLLAK 133

Query: 271 HGN-------NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAI 319
            G         + +            G + D++ +  + + L  +   L NL       I
Sbjct: 134 DGTYKHFLDKGRVFSYSEDGKPLLMIGTSTDITHQKNIEEALRTSAHRLSNLIADFQEGI 193

Query: 320 AIFDQNRYLQFHNRSFVELWEID--LAFLATNPSN---DELLEFLRSANKLPEQLNWKTW 374
            + D+NR +   N+ F  ++ +      L     +   ++   F R  +    ++N    
Sbjct: 194 LLEDENRAIVLVNQQFCNMFSVPLKPDELVGVDCSGMAEQSKGFFREQDAFVARVNQLLQ 253

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT----IWMFENLTVQVDLETKYN 430
           ++ +           +   L +G+T           G     +W + ++T +   E    
Sbjct: 254 EQKLV--------IGEEISLADGRTFERDYIPIFIDGVYAGHLWKYTDITKRKHAEDAAF 305

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            L +     I++++ G+     + RI  +N +F ++   E + L        +    +  
Sbjct: 306 YLNEKYQRIIENMNLGLIEVDLEERIVYTNQSFCAMSGYEPDELIGQVATDILLKGQNIQ 365

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNV 545
           + +          + +++   K+ +G            S  PL +       +    +++
Sbjct: 366 FMKEKNESRLRGNVDAYEVSIKNKRG-----DAMWWLVSGAPLYSQSGQVIGSTGIHLDI 420

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T   + E  L    +    +  +K  F+ ++S+E+R+P+  I    +L +     SL   
Sbjct: 421 TKQKQLESELRVAKQEAEHSARVKELFLANMSHEIRTPMNAI---LNLGQQITKTSLTEH 477

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  ++  I+ +++ LL ++NDILD + ++AG + L +    L DL+ +  Q +     + 
Sbjct: 478 QQFFIGMINTAASNLLVIINDILDFSKIEAGELSLEHINFDLADLIGQAVQVMTHDAEKK 537

Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIF 721
            + I      G   + + D  R+ QI   ++ N++ F++ GS  +   + +  G+     
Sbjct: 538 GLVISTEIGSGLPPTLLGDPFRINQILLNLIGNSVKFTNAGSVHIQCNSKKVAGNQLITL 597

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV + G  I  +   ++F +F         +  G GLG+SI +  ++L GG + + S   
Sbjct: 598 SVTDTGIGIAPEFLSNLFTKFTQEDGSIGRRYGGSGLGMSITKQLVDLMGGTIDVKSEKN 657

Query: 780 GVTTINCRI 788
             TT+  ++
Sbjct: 658 KGTTVTVKL 666


>gi|239787541|emb|CAX84010.1| Sensor protein [uncultured bacterium]
          Length = 834

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/656 (17%), Positives = 250/656 (38%), Gaps = 43/656 (6%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
              Y  +     K +++  H+       +     V   D  G I + N  + + +   G 
Sbjct: 180 SVAYQTVVRDISKRRQVEEHLRKLSRAVEQSASSVCITDTKGTIEFVNPRFAELS---GY 236

Query: 232 VFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
              + +G + ++        E    + S+ +  + +          +   Y +   ++  
Sbjct: 237 DADEVVGLNPRILKSGELGSEAYNDLWSTISAGREWRGEFHNRRK-DGSLYWVSASISPV 295

Query: 287 GEAGIAI--------DVSKEITVNDQLT-----------HTYEILHNLTVAIAIFDQNRY 327
             A  AI        D+S +    + L               + + +++ A  + D +  
Sbjct: 296 RNAEGAITHFLAIEDDISGQKRSEELLREARDWAAGAQERLTDAIESISEAFILCDADDR 355

Query: 328 LQFHNRSFVELW-EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
           +   N ++++ + E+        P  D +  F  +        + + W       ++ ++
Sbjct: 356 VILWNANYLDFYPELRTVLDVGVPFEDLVRAFAATGAPADAATDPEAWIRKRLIQHRLAD 415

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            +     L +G+ L V       GG + +  ++T ++  E       +     ++    G
Sbjct: 416 GNPHVQRLGDGRWLLVSENRTSEGGIVSVRTDITERMQAEKALRRSEERYELAVEAGKVG 475

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIIT 505
           V  +          P  +++   E+  +         +     R + ++           
Sbjct: 476 VWDWNIKTGEMYIAPKLKAMLGYEDTEVPNRFEAWMELVHAEDRPHVKAATAAHLEGRTE 535

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNE 560
             +   + +       S    + S +   + Q        T  ++ D V  E AL    +
Sbjct: 536 RHEVRYRRVHKN---GSSYWFKASGVVQRDTQGRPERMAGTDADIIDHVLTEAALRAAKD 592

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTI 619
               A+  K  F+ ++S+ELR+PL +IIGF+D+L     G +   +  +Y   I+++ + 
Sbjct: 593 NAEVANRAKTEFLANMSHELRTPLNSIIGFSDILVNQSFGPMGVPEYVEYARDINSAGSH 652

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+NDILD++ ++   + LN   I    + N  ++ +  +     + + +    +  +
Sbjct: 653 LLSLINDILDVSRIEVEALSLNEQRIDAAHMANSCQRLVLDRAKRAKLNLVLDMPKQFPA 712

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKS 737
              AD +R+ Q+   +L+N++ F+  G TV LK   D  G F+F+V + G  I  +  ++
Sbjct: 713 ALYADERRVKQVLLNLLANSIKFTEPGGTVTLKGMLDEEGRFVFAVADTGIGIAPEDIEA 772

Query: 738 VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + F         +  G GLGL + +  + LHGG +S+ S     TT+  R P +
Sbjct: 773 AMSTFGQVDSSFTRRYEGAGLGLPLSKKLVELHGGGLSLESQPGVGTTVTIRFPKE 828


>gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 740

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 172/372 (46%), Gaps = 17/372 (4%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E +     + +   +D L+E V    P+ +I  +N A        +   + G  ++   
Sbjct: 352 AEQELKAQAREKKVLLDSLNELVVFVSPELKIIWANKAALEYMN-MDLESAMGVCLKATP 410

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TM 539
                         +F +      +E+KS  G        V  +   P+ + Q      +
Sbjct: 411 GISGPLVEFMYLEHIFTS------EEKKS--GEFTAKDGKVWFFQATPVTDDQGKIIGVL 462

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            T  +VT+   AE+ L  + +    A+  K+ F+ ++S+ELR+PL +IIGF+DLL     
Sbjct: 463 QTCRDVTERKEAEKLLQ-EKQVAEVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIY 521

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G LN KQ + V  IS S   LLNL+NDILDL+ V+AG ++L Y    L+  LN +K  ++
Sbjct: 522 GDLNEKQLKAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLLS 581

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                  I +++  D  L +  AD  R  QI   +L NA+ FS +   V + A R     
Sbjct: 582 PIADRKMIEVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEIDAKRKGDTV 641

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +VK+ G  I  +    +F  F   A     + +G GLGL++V+  +NLHGG++  +S 
Sbjct: 642 EITVKDYGIGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFNSR 701

Query: 778 DEGVTTINCRIP 789
               +T    IP
Sbjct: 702 IGEGSTFAFTIP 713


>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1784

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/737 (16%), Positives = 259/737 (35%), Gaps = 73/737 (9%)

Query: 94   EIIGQLHQRIDIPQ--TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC 151
            ++   L Q             L           +  ++    L+ +G  F        + 
Sbjct: 559  QVEALLPQEYGERHVLERQTFLREGR----DRSMANARHVRALKADGNEF------IAEI 608

Query: 152  AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            A+ I               +     ++ +     +K+ +    F+ L  ++   V +R +
Sbjct: 609  ALSILPTAFDGQ-----RQVAASIRDMTQKLAVEQKIRDSEQRFRGLVTNIPGAV-YRTR 662

Query: 212  AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS---------SALEKNF 262
             GD+ +         E  G    + I   ++ F   I +    +         +  E   
Sbjct: 663  IGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRPTCHLHIDRALAQQETFE 722

Query: 263  CETVSTLEHGNNKSYK------IVRVLNSFGEAGIAIDVSKE----ITVNDQLTHTYEIL 312
             E       G+ +                    G   D+++     + +         I 
Sbjct: 723  VEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESKLALVQLEQSRQQMTNIT 782

Query: 313  HNLTVAIAIFD----QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             ++   +         +R   F + + +++  +    L +N   D + E +    +    
Sbjct: 783  ESIPCTVYQLQWHSPIDRRFTFLSGAAMKMLGLHRDDLMSN--FDIIAERIFDEERPDVV 840

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIW--MFENLTVQ 422
                   E+     +     +  +  PNG    +   ++      G   W     ++T +
Sbjct: 841  RALSGQSEDRLQWIR-----EFRYRHPNGSIRWMEAGASGHLGEEGAITWNGYVMDITQR 895

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              +E +            D  + G+      G I   N  F +      N L     I  
Sbjct: 896  KTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCADMALSRNHLRNTA-IFE 954

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---- 538
            + +   +   ++   +L    I  +  ER  ++ +   L    +  ++  L +AQ     
Sbjct: 955  VLSEQDQPIAKAQFQELVEGKIDHYRGERSFIRPSGAPL---WMTVNVSALLDAQGQFES 1011

Query: 539  -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +++ V++T+       L    E    A + K  F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1012 AVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1071

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   L+ KQ  YVE I  +S  LL+++NDILD + ++AG + ++     L+ +L ++   
Sbjct: 1072 E---LDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDM 1128

Query: 658  IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
             + K     I +       +    + D  RL Q+   +++NA+ F+ +G  +    +++ 
Sbjct: 1129 FSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQ 1188

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
              D+    FSV+++G  + E     +F  F        R   G GLGL+I +  + L GG
Sbjct: 1189 QDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGG 1248

Query: 771  HVSISSSDEGVTTINCR 787
             + + S     +T    
Sbjct: 1249 KIGVESQFGHGSTFYFT 1265



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 55/418 (13%), Positives = 126/418 (30%), Gaps = 61/418 (14%)

Query: 164 AFLRILSLDGIYSELAET--TLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWAN 219
           A   I++L   ++++AE     +   L +  + F  L D +    ++   D  G +    
Sbjct: 363 AVSEIVTLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQL---- 418

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL---------- 269
                          K +G S  L K + ++   ++   EKN+  T   L          
Sbjct: 419 -------AQVSEGVTKVLGISPDLLKRKYQRLFSANPLNEKNWQYTDFALKGQNVPSHQV 471

Query: 270 ----EHGNNKSYKIV-RVLNSFGEAGIAIDV--SKEITVNDQLTHTYEILHNLTVAIAIF 322
               + G+ +   +  + L S     +++++  +           +  +L     A+ I 
Sbjct: 472 EMLDDQGHLRRLDVFMQPLMSDTGELMSVEMLFTDVTEQFSAAVWSNAVLEAAPEAMLIV 531

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D+   + F N   ++L+  +   +        L +     + L  Q   +  ++   +  
Sbjct: 532 DELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQEYGERHVLERQTFLREGRDRSMANA 591

Query: 383 KSSETHKDTWHLPNGQTL--HVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKV 435
           +     K      +G      + ++  P     +        ++T ++ +E K     + 
Sbjct: 592 RHVRALK-----ADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               + ++   V               +R+             +I  I    +  + E +
Sbjct: 647 FRGLVTNIPGAV---------------YRTRIGDVWFMEYISDNIAEITGYAASQFIE-N 690

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNAQTMLTFVNVTDSVRAE 552
               FA++I   D     L     L      E    I   +            S   E
Sbjct: 691 RQRTFASLILEEDRPTCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEE 748


>gi|307151274|ref|YP_003886658.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981502|gb|ADN13383.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1811

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 144/774 (18%), Positives = 280/774 (36%), Gaps = 78/774 (10%)

Query: 65   ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD-TDLLSFENWLKFHH 123
            + +   +    L+        W+ K +      +  Q  DIP          +++L    
Sbjct: 920  LQESAQRLSLALSAAKMGDWSWNAKTDMVTFSERGAQIFDIPSGPYLTWTQIQSYLHPED 979

Query: 124  YIKLSKATE-KLRKEGQ---SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
                  A E  +R+       + L+        +  +GR     A   +L + G+  +++
Sbjct: 980  QELARLAVENSIREHSDYDIEYRLMLSDGTYRWVAAKGRA-QYNASGNVLGMFGVVQDIS 1038

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA-NISYKKNTETEGIVFQKAIG 238
            E     + L    +   V   +    V+++D+     W  N ++    +      +    
Sbjct: 1039 ERKQAEETLRQTEARLYVALKNSPITVFNQDRELRYTWIYNPAFNYPLDYIIGKRE---- 1094

Query: 239  ESRKLFKEEIKKRMIS----SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GE 288
               +LF      ++I              E V       +  Y +             G 
Sbjct: 1095 --NELFAHSDVTQLIEIKQGVLDTGIAAREEVKIGMPDGDYYYDLTVEPLYDKGSKIMGI 1152

Query: 289  AGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDL- 343
               AID+S+   +   +  +  +L+    +  VA+A  DQ+    + N +   +  + L 
Sbjct: 1153 TCAAIDISERKQMELAIRKSETVLNAFLTSSPVAVAFLDQDLRYIYANEALAAINGVPLK 1212

Query: 344  --------AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
                      L    S+ +++     A K P      + + N   +Y+    +    +LP
Sbjct: 1213 EHIGRTVWEVLPAWASDIQVVVEQVLATKQPLLNQEVSGETNPPGLYRYGLVNYYPVYLP 1272

Query: 396  NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            +G+ L V +TS           +++     E       +     +   S+ V      G+
Sbjct: 1273 DGEVLGVGITSM----------DISELKRTEQALRESEERYRSLVTASSQIVWRANHQGQ 1322

Query: 456  IKLSNPAFRSLWKTEENRLSPGT----HIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
                   +          L  G+    H +++      +Y        +       +   
Sbjct: 1323 FVDV-QGWEEFTGQPVEELLAGSTAAIHPQDLERVRQIWYKAVKSKTTYE-----VEHRI 1376

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTE-------KN 559
            +   GT E           IP+ +A   +        N+    +AE    +         
Sbjct: 1377 RKYDGTYE-----YFAIRGIPVLDAGGEVYTWVGMTTNIHQRKQAEMEREQLLEAERRAR 1431

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E   +A+ IK+ F+  +S+ELRSPL  I+G+T +L+T KL    ++Q+  +  I  ++ +
Sbjct: 1432 EEAERANRIKDEFLAVLSHELRSPLNPILGWTQMLQTYKLDEKATQQA--LATIERNAKL 1489

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
               L+ D+LD++ +  G M LN + + L  ++    +++       NI+I+      +G 
Sbjct: 1490 QTQLIEDLLDISRILRGKMVLNIAPVNLVSVIQSALETVRLAAEAKNIKIQTRFAAGVGE 1549

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             + D  RL Q+   +LSNA+ F+  G  + +     + +   SVK+ G  I  +    VF
Sbjct: 1550 VLGDSARLQQVVWNLLSNAVKFTPAGGQIEIDLELKDINAQISVKDTGKGINPNFLPHVF 1609

Query: 740  NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
              F     +  R   G+GLGL+IV     LHGG V++ S  EG   T    +P 
Sbjct: 1610 EYFRQEDSKTTRKYGGLGLGLAIVRHLTELHGGTVAVDSPGEGLGATFTVSLPL 1663



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/467 (14%), Positives = 152/467 (32%), Gaps = 52/467 (11%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
            T + K +S        + D +    W     GD  ++N       E  G   Q+ IG +
Sbjct: 1   MTEQGKGISTQPQDLAKIIDQIREGFWVLSWEGDCTYSNQP---QAELMGKSKQEIIGNN 57

Query: 241 -RKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
            R+LF + I   +       + +        L+    + Y+      + G A + ID+++
Sbjct: 58  IRELFPQWIGTEIEQKFHQIITEKTASNFEYLDTARQRWYEYRVNPTAQGLAILTIDITE 117

Query: 298 ----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
               E T  + +      +++   +  I      + + N ++  +++     +       
Sbjct: 118 RKRTEKTFQESIEQFRAFMNHSPASAWIATAEGRILYLNPTYFRMFQFPQTDVIGKTI-- 175

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRGG 411
                   A    E+   K + EN   V+++ +  +     P  NG+T   +V   P  G
Sbjct: 176 --------AEIYSEEFAQK-FLENNRQVFETQQPVETIEVAPLHNGKTGQFLVYKFPIFG 226

Query: 412 ------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                    +  ++T + + E       +     ++ +++G   F    R    N     
Sbjct: 227 QGEEMLIGGVAIDITERQEFEASLKAANQQISNILESITDGFIAFDRQWRYTYLNQEACR 286

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           L +     L        +  T    + +   +  ++   +  + D++          + +
Sbjct: 287 LLEKSPQEL--------LGKTWQECFPQVPQEDPEVLNQLQRAIDEQITVKFENFCQVIN 338

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             LE S  P   ++ +  +       + E        A+  A    ++ V  VS      
Sbjct: 339 RWLEVSAFPF--SEGLALYFRDITERKQEEQRKAAQYAVTYALASTSNLVDTVS------ 390

Query: 584 LTNIIGFTDLL--KTSKLGSLNSKQS--QYVEYISASSTILLNLVND 626
            T +    + L  +      ++  Q   +Y+     SS  L   + +
Sbjct: 391 -TILQSLCETLHWQLGIFWRVDRHQQVLRYLNSWHNSSIDLEKFIEE 436



 Score = 87.7 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 85/267 (31%), Gaps = 21/267 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TET 228
           +  ++ E     K     I  F+   +      W     G IL+ N +Y +      T+ 
Sbjct: 111 LTIDITERKRTEKTFQESIEQFRAFMNHSPASAWIATAEGRILYLNPTYFRMFQFPQTDV 170

Query: 229 EGIVFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNS 285
            G    +   E     F E  ++   +   +E      +   + G      + I      
Sbjct: 171 IGKTIAEIYSEEFAQKFLENNRQVFETQQPVETIEVAPLHNGKTGQFLVYKFPIFGQGEE 230

Query: 286 FGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
               G+AID+++       L         IL ++T     FD+     + N+    L E 
Sbjct: 231 MLIGGVAIDITERQEFEASLKAANQQISNILESITDGFIAFDRQWRYTYLNQEACRLLEK 290

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
               L      +          ++P++ + +   +   ++ +      + +     + L 
Sbjct: 291 SPQELLGKTWQECF-------PQVPQE-DPEVLNQLQRAIDEQITVKFENFCQVINRWLE 342

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETK 428
           V       G  ++ F ++T +   E +
Sbjct: 343 VSAFPFSEGLALY-FRDITERKQEEQR 368



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 146/419 (34%), Gaps = 46/419 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E     + L    ++F+   D      + +D+ G  ++ N  +++    + I+  +    
Sbjct: 519 ERKRTEEALKESQNLFQSFMDHSPIAAFIKDETGQHIYVNAWFEQLFAGKEIIGLRDFEI 578

Query: 240 SRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKS----YKIVRVLNSFGEAGIAI 293
             ++  ++ +   +    S     F ET+   E G +      +           AG+++
Sbjct: 579 YPQVAAQQFRANDLKVLDSNEVMQFLETLPQ-EDGEHYYVSFKFPFQDSSGRKLVAGVSM 637

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAI--AIFDQN--RYLQFHNRSFVELWEIDLAFLATN 349
           DVS  I   + L  + E       A+   ++D +      + +     L  I    +   
Sbjct: 638 DVSDRIRAEEALRLSDERFRLAARAVKGIVYDWDVLSGTVYRSEGLYPLMGIHPDDVPQ- 696

Query: 350 PSNDELLEFLRS---ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV---- 402
            + D   E L     A  +PE       +  ++  ++    H+      +G+ + V    
Sbjct: 697 -TRDWWSERLHPDDLARIMPEMGFLIEGRGELYE-FEYRVRHE------DGRWIEVWDQG 748

Query: 403 IVTSNPRGGTIWMF---ENLTVQVDLETKYNTLV-------KVQGETIDHLSEGVAVFG- 451
            +  +  GG + +     ++T +   E +   L+       +     +  +  GV V   
Sbjct: 749 YLLRDQNGGLLRVVGFTSDITERKQAEAEKQQLLEQIKTEREFLEAVLQQMPAGVMVANA 808

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRN---IAATCSRYYNESDGWDLFAAIITSFD 508
             G I L+N   + +W+          H           S    +   W LF ++ T   
Sbjct: 809 ATGDIMLTNEQIKYIWRISSLLPFENIHQSERLYHGFHLSGRPYQLHEWPLFRSVKTGEV 868

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEAL 562
              + +       +  ++  +  P+ + Q      ++TF +++D  +AE AL E  + L
Sbjct: 869 VREEEIIFLRGDGTWGIMLVNSAPIRDTQGNIKAGVVTFYDISDRKQAEEALQESAQRL 927


>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 944

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 102/503 (20%), Positives = 188/503 (37%), Gaps = 45/503 (8%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           +    I  +    + + D  + +   NR+   ++      L   P     +  L    + 
Sbjct: 22  SAHAAIFEHSRDGVLVLDAGQRIVEVNRAAERIFG-PRTRLVGQP-----VGLLLPGWRP 75

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ----TLHVIVTSNP---RGGTIWMFEN 418
           PE       +    +  + +E      H P G      L V+    P    GG +    +
Sbjct: 76  PEP------RAPADAALRETELAG---HRPGGSGPAHYLRVVTLPLPGEGDGGWVLQLHD 126

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T ++++E       +     + +    +       R+   NP    L+       + G 
Sbjct: 127 MTARLEVEASLRQQKEFFEAVVINSPVAIITITRQFRVLSWNPEATRLFGYSPAE-ALGK 185

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           HI  + AT      E++                + ++    ++    +E   +P+     
Sbjct: 186 HIFELVATEPTVLPEAEQASREVVQRGRLRSVTRRVRKDGSVVD---VELRALPVSVGGR 242

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            L F+ +   +     L    +A   A++ K+ F+  +S+E+R+P+  IIG T LL    
Sbjct: 243 QLGFIAIYHDIT---DLERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDR- 298

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L  +Q  +V  I  SS  LL L+ND+LD + ++AG  +       L   +  V   +
Sbjct: 299 --ALTEEQRDFVATIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLM 356

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
           A +  E  + +       L    V D  RL Q+   ++ NA+ F+  G   V ++     
Sbjct: 357 AVRASEKGLDLGCDLAPPLPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVSVEGLALG 416

Query: 717 G-------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           G       +  FSV++ G  IP+D    +F  F        RR  G GLGL+I +  +  
Sbjct: 417 GTEGAADWELTFSVQDTGLGIPDDRRTGLFQPFNQLDASVSRRFGGTGLGLAISKRLVEA 476

Query: 768 HGGHVSISSS--DEGVTTINCRI 788
            GG + + S       TT    +
Sbjct: 477 MGGTIWVESEGVPGQGTTFRFTL 499



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 77/269 (28%), Gaps = 23/269 (8%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
           S    +F+     V   D    I+  N + ++       +  + +G     ++    +  
Sbjct: 22  SAHAAIFEHSRDGVLVLDAGQRIVEVNRAAERIFGPRTRLVGQPVGLLLPGWRPPEPRAP 81

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI---DVSKEITVNDQLTHTY 309
             ++  E              +    +   L   G+ G  +   D++  + V   L    
Sbjct: 82  ADAALRETELAGHRPGGSGPAHYLRVVTLPLPGEGDGGWVLQLHDMTARLEVEASLRQQK 141

Query: 310 EILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           E       N  VAI    +   +   N     L+    A        + +         L
Sbjct: 142 EFFEAVVINSPVAIITITRQFRVLSWNPEATRLFGYSPAEALGKHIFELV---ATEPTVL 198

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNP------RGGTIWMFEN 418
           PE       ++    V +       T     +G  + V + + P      + G I ++ +
Sbjct: 199 PEA------EQASREVVQRGRLRSVTRRVRKDGSVVDVELRALPVSVGGRQLGFIAIYHD 252

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +T             + +   +  +S  +
Sbjct: 253 ITDLERARKAAEAANQAKSLFLATMSHEI 281


>gi|260173727|ref|ZP_05760139.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921992|ref|ZP_07918232.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695867|gb|EFS32702.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 785

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/648 (18%), Positives = 247/648 (38%), Gaps = 43/648 (6%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKV-----------------LFDSLDFL--VWHRDQAG 213
            +  +L     + ++L   +S  +                  + DSL  +  V+++ + G
Sbjct: 9   ALLEQLEALKKENEQLRKELSTLRDEKYNDRPVSFKEKYAVRILDSLPDMLTVFNQSEVG 68

Query: 214 DILWANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
             + +N         N +  G+  Q  +        + I   M  +              
Sbjct: 69  IEVVSNEETNHVGISNKDFRGMRMQDMVPPEA---YQNIHSNMRHAITTGTVSTAHHELD 125

Query: 270 EHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
            +G    Y+  +  L+      +  D+++ +    QL     +L  ++ +I    ++  L
Sbjct: 126 FNGERHYYENRIFPLDEEYVLIMCRDITERVATQRQLEVFKSVLDKVSDSILAVAEDGTL 185

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            + N+ F+E + +          +   L    +  +  EQ             Y+++   
Sbjct: 186 VYANKQFIEEYGVTQELGTQKIYD---LRVSMTNKEAWEQKLQVIRDHEGSLAYRAAYIP 242

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
                    Q    ++  N +  T +  +++T  +    +   L  +    ++++   + 
Sbjct: 243 YGHTKERVHQVSTFLIRENNQELTWFFTQDITDVIKKRDELRELNLLLDGILNNIPVYLF 302

Query: 449 VFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V  P  D R    N AF        ++    T                D  +L       
Sbjct: 303 VKDPEDDLRYLYWNKAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQT-HKR 361

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRK 564
            D +   L    E      L+ +++P+   +   +    ++T+    E+ L +      +
Sbjct: 362 IDMQETYLSANGEARIVQTLK-ALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQ 420

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +D +K++F+ ++S+E+R+PL  I+GF+ LL          ++  Y   I+ +S ILL L+
Sbjct: 421 SDRLKSAFLANMSHEIRTPLNAIVGFSQLL---PSAETAEEKKLYSGIINQNSDILLQLI 477

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDL+ ++AG ++     + L ++   +      ++ E  + +   ++ +      D+
Sbjct: 478 NDILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVKE-GVTLVFDNEEEDLLMEGDQ 536

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            R++Q+ +  L+NA  F+ +G  + L   R + D    VK+ G  I  +    +F RFV 
Sbjct: 537 NRIMQVITNFLTNASKFTYEGE-IRLGFGRMDKDIRVYVKDTGIGIEPEKVDHIFERFVK 595

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                Q  G GLGLSI    I   GG + ++S     +T    IP +E
Sbjct: 596 LNSFAQ--GTGLGLSICRMIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|209523365|ref|ZP_03271920.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
 gi|209496107|gb|EDZ96407.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
          Length = 1010

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/662 (19%), Positives = 250/662 (37%), Gaps = 57/662 (8%)

Query: 152  AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR-D 210
             I  +G+ +G CA +         +++         L      F+ +  ++    + +  
Sbjct: 372  PIFDDGKYAGCCAII---------TDINYRKKTEVALIKSEKRFQEIASTISQFFFVKCA 422

Query: 211  QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK----NFCETV 266
             +G  ++ + +Y+K          +           E +  +I+    +        E  
Sbjct: 423  HSGQYIYLSPAYEKIWGRTCESLYQNPDSWLNTIYPEDRGAVINYQEKQHQNNLVKREYR 482

Query: 267  STLEHGNNKSY--KIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEIL----HNLT 316
                 G  +    ++  + N  G      G A D+S        L  + E+L    ++  
Sbjct: 483  IIRNDGVIRWVYEEVNIIYNDDGSPLRYIGFAEDISDRKEAEIALAESEELLRIAVNHAP 542

Query: 317  VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
                I+D +R L+F NR  +EL              +  L         PE  +      
Sbjct: 543  DVFVIYDSDRRLKFVNRRVLELTSWSEETFIGRRDEELFL---------PEATSHYLPLL 593

Query: 377  NIFSVYKSSETHKDTWHLPNG--QTLHVIVTSNPR-----GGTIWMFENLTVQVDLETKY 429
                   S +  + T  LPN   +TL V               + +  ++T     E K 
Sbjct: 594  EKTIQTLSIQMGEATITLPNQPPKTLIVKYLPLLDKQGKLSQILGLTFDITHYKQAEQKL 653

Query: 430  NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                ++     +  + G+A+  P G     N     +   +E  L      ++I      
Sbjct: 654  RDSEELFRTAFEDAAIGMALLSPQGNCLKVNRCICEMLGYQEAELLQ-LQCKDITHPEDY 712

Query: 490  YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                     L    +  +  E++ L     ++    +  S+  + N   +  +       
Sbjct: 713  EQEVKSIKKLLDGQVQYYYVEKRYLHKQGYVI---WVLLSMSVVRNIDGVPLYFIAQAQN 769

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             +ER            +++KN F+  VS+ELR+PLT I G   LL +        +  ++
Sbjct: 770  ISERR---------AVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKF 820

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++     +  L+ LVNDILD+  +++G ++         DL+ +V +S+    H+++I +
Sbjct: 821  IQIALLETERLVRLVNDILDIERLNSGQVEFQMEACSAQDLMTQVVKSLQAIAHQDSITL 880

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +++         A+R  +LQ  + ++ NA+ FS   +TV L A   +   +F V++ G  
Sbjct: 881  EIL--PTSLQLWAERDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRG 938

Query: 730  IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IP +  +++F+RF  V  +   Q+ G GLGLSI +S I  HGG + + S     +T    
Sbjct: 939  IPPEQLETIFSRFQQVDASDSRQKGGTGLGLSICQSIIQQHGGKIWVESQLAKGSTFYFT 998

Query: 788  IP 789
            IP
Sbjct: 999  IP 1000



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/413 (12%), Positives = 121/413 (29%), Gaps = 45/413 (10%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++++       L    + F+ + ++    VW  D        N               +
Sbjct: 263 QDISDRQKTEAALIKSEAKFRTIIETTLEGVWMIDSDNMTTCVNQQMADMLGYTQEEITQ 322

Query: 236 A-----IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-----KIVRVLNS 285
           +     + E      E   +R     A +  F        +G+          I      
Sbjct: 323 SSLFKFVDEQDYPIVENYLQRRREGIAEQHEFKWKRK---NGDILWTILSTNPIFDDGKY 379

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF-----DQNRYLQFHNRSFVELWE 340
            G   I  D++        L  + +    +   I+ F       +    + + ++ ++W 
Sbjct: 380 AGCCAIITDINYRKKTEVALIKSEKRFQEIASTISQFFFVKCAHSGQYIYLSPAYEKIWG 439

Query: 341 IDLAFLATNPSNDELLEFLRSANK-----LPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
                L  NP  D  L  +   ++       E+ +     +  + + ++    +  +   
Sbjct: 440 RTCESLYQNP--DSWLNTIYPEDRGAVINYQEKQHQNNLVKREYRIIRNDGVIRWVYE-- 495

Query: 396 NGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
                 V +  N  G     I   E+++ + + E       ++    ++H  +   ++  
Sbjct: 496 -----EVNIIYNDDGSPLRYIGFAEDISDRKEAEIALAESEELLRIAVNHAPDVFVIYDS 550

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           D R+K  N     L    E                + +Y       L    I +   +  
Sbjct: 551 DRRLKFVNRRVLELTSWSEETFIGRRDEELFLPEATSHY-----LPLLEKTIQTLSIQMG 605

Query: 513 SLQGTLELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNE 560
               TL       L    +PL +     +Q +    ++T   +AE+ L +  E
Sbjct: 606 EATITLPNQPPKTLIVKYLPLLDKQGKLSQILGLTFDITHYKQAEQKLRDSEE 658



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 93/292 (31%), Gaps = 28/292 (9%)

Query: 296 SKEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           S        + H  + L  N  +   I+D+   +   ++   E++    + +     N+ 
Sbjct: 140 SGITQQLQSVNHQLKTLIDNSPMGTIIWDRKLRVIQWSKQAEEIFGWSESEVLGKSMNEW 199

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL---HVIVTSNPRGG 411
            L F   ++++    N +T  + IF+  +      +  +  +G  +             G
Sbjct: 200 KLIFEEDSDRI----NRET--QTIFANQEKRRICINRNYRKDGSVIYCEWYNSNFYDESG 253

Query: 412 TIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            + M     ++++ +   E             I+   EGV +   D      N     + 
Sbjct: 254 KLNMLLSWVQDISDRQKTEAALIKSEAKFRTIIETTLEGVWMIDSDNMTTCVNQQMADML 313

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              +  ++         ++  ++ +E D   +   +    +   +  +   +  +  +L 
Sbjct: 314 GYTQEEITQ--------SSLFKFVDEQDYPIVENYLQRRREGIAEQHEFKWKRKNGDILW 365

Query: 528 --YSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFV 573
              S  P+ +            ++    + E AL +  +  ++     + F 
Sbjct: 366 TILSTNPIFDDGKYAGCCAIITDINYRKKTEVALIKSEKRFQEIASTISQFF 417


>gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 1238

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 115/507 (22%), Positives = 218/507 (42%), Gaps = 40/507 (7%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + ++      ++  L VA  + D    ++  NRS  EL++  +  L      + +L  L
Sbjct: 351 ELQEREERFRLLVERLPVATLLCDDKGRIEMANRSAAELFDCPINALPG----ETVLRVL 406

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFE- 417
                     N ++ K+    + +S E    T     G+++ V ++ NP   G+ ++   
Sbjct: 407 ---------PNIESPKDLHEQLAESDERMVRTLR---GESIPVSISLNPLHEGSSYLINL 454

Query: 418 -NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +L  +   E ++          ++     + +    GRI + N     L+   E ++  
Sbjct: 455 VDLRARKVAEERFRL-------VVEASPNAILLVDGLGRIAMVNRQTEVLFG-YERQMLL 506

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G  +  +     R  + +      A          + L G         LE  + P+ + 
Sbjct: 507 GEPVEMLLPAAQRGSHVALRRGYQAMPEQRRMGGNRELFGLHREGRMIPLEVGLSPIRSG 566

Query: 537 Q---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                    +++++   AE+ L E+ E L  A+  K+ F+ ++S+ELR+PL +I+  +D 
Sbjct: 567 DENLVQAVIIDISERKAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILILSDQ 626

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ +  G+L  KQ+++ + +  + + LL L+ND+LDLA V++G M+L    I + D+L E
Sbjct: 627 LRQNLAGNLTEKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQDVLVE 686

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +  S+        +R+    +  +   +  DR RL QI   +LSNA+ F+  G  V L  
Sbjct: 687 LDASLRPMAELKGLRLHTQLEAGVPRIIHTDRVRLHQILRNLLSNALKFTDHGD-VTLSV 745

Query: 713 ARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           +             FSV+++G  I     + +F  F        RR  G GLGL+I    
Sbjct: 746 SSQGRQEDERELLCFSVRDSGIGIDPAQHEQIFQAFQQLDGSTSRRFGGTGLGLAITRQL 805

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           +    G +S+ S+    +T   R+P K
Sbjct: 806 VLALDGDISLQSAPGLGSTFTVRLPVK 832



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 69/259 (26%), Gaps = 23/259 (8%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-GIVFQKAIGESRKLFK 245
           +L      F++L + L       D  G I  AN S  +  +     +  + +       +
Sbjct: 351 ELQEREERFRLLVERLPVATLLCDDKGRIEMANRSAAELFDCPINALPGETVLRVLPNIE 410

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
                             E +     G +    I       G     I++          
Sbjct: 411 SP-----KDLHEQLAESDERMVRTLRGESIPVSISLNPLHEGS-SYLINLVDLRARKVAE 464

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK- 364
                ++     AI + D    +   NR    L+  +   L   P    L    R ++  
Sbjct: 465 ERFRLVVEASPNAILLVDGLGRIAMVNRQTEVLFGYERQMLLGEPVEMLLPAAQRGSHVA 524

Query: 365 -------LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                  +PEQ         +    +    H++   +P    L  I  S        +  
Sbjct: 525 LRRGYQAMPEQR-------RMGGNRELFGLHREGRMIPLEVGLSPI-RSGDENLVQAVII 576

Query: 418 NLTVQVDLETKYNTLVKVQ 436
           +++ +   E K     +  
Sbjct: 577 DISERKAAEQKLREQAEQL 595


>gi|238894393|ref|YP_002919127.1| hypothetical protein KP1_2376 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546709|dbj|BAH63060.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 897

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 214/495 (43%), Gaps = 27/495 (5%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L+ L  A+ I+D+   LQ  N      +     +LA   S + L E    A    +    
Sbjct: 9   LNLLPSAVMIYDERERLQAWNDKVALFYPTIAPWLAVGASLESLAEKFIDAGYNIDPGRQ 68

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +T +E I    + +  H +     N + ++V       GG + +  ++T   +     + 
Sbjct: 69  QTLREAIIRNCRQT-NHCEVRQSGN-RRIYVQHQRLADGGIVSLHTDITELDEARRSRHQ 126

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L      T + +  G+  +   G     N    ++    ++R      +R +        
Sbjct: 127 LHDDFLFTAESIQIGIWDWQVSGDSLQVNDTLLAMVG--QSRAQWRFPLRFML----NLV 180

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLE-----------LLSDSVLEYSIIPLPNAQTML 540
           +E D   L  A+I S ++     +  L            LLS  ++  ++      + + 
Sbjct: 181 HEDDRATLQQAMIASQNEHMPVFECELRVQHPTQGWRWMLLSGQIVTLNMQQQAE-RVIG 239

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T    AE    E  +  R+A+E K++F+ ++S+E+R+P+  I+G T L   +   
Sbjct: 240 TLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT--- 296

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q +Y+  + +S+  LL+++NDILD + +++G M+++   + +   +  + +    
Sbjct: 297 PLTAEQREYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDVEPLEIRPFVQSLIRPHMP 356

Query: 661 KMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
              E  I + V     +    + D  RL QI + +L NA+ F+ +G  ++ +  A D+  
Sbjct: 357 AASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPAEDDNR 416

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + F +++ G  I  +  K++F  F        RR  G GLGL+I    ++L GG +++ S
Sbjct: 417 WRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVES 476

Query: 777 SDEGVTTINCRIPSK 791
                +     +P +
Sbjct: 477 QPGAGSEFAFTLPLE 491


>gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1287

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 127/655 (19%), Positives = 257/655 (39%), Gaps = 71/655 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++ E     ++L     V     D +       D  G I W N +Y+      G   ++ 
Sbjct: 368 DITELRNSRERLKELAIVASNTTDYIV----ITDHKGFITWVNKAYE---THTGYNRKEV 420

Query: 237 IGESRKLF------KEEIKKRMISSSALEKNFCETVS-TLEHGNNKSYK--IVRVLNSFG 287
            G++  L         E   R+ +    +K   E V    ++G        I  V + +G
Sbjct: 421 EGKNPLLLLQGPETDHETLDRIWADCKNKKVVREEVLCYTKNGEKYWVDLKITPVFDDYG 480

Query: 288 EAG--IAID--VSKEITVNDQLTHTYEILHNL-TVAIA----IFDQNRYLQFHNRSFVEL 338
                IA++  ++     + ++    +IL    +VA+     ++ +   L + + +  E+
Sbjct: 481 NCSNFIAVERNITARKESDQEMKRIKDILQQTNSVAVVGGWELYARTGEL-YWSSTTREI 539

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW------ 392
            E+D  ++   PS +  + F +              +E I    +   ++   W      
Sbjct: 540 HEVDPDYV---PSTETAIGFYKEG----------ASREAIARAVEKGLSYGTPWDNELQI 586

Query: 393 --HLPNGQTLHVIVTSNPRGGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                N + +  I  +    G        F+++T +   E +            D  S+ 
Sbjct: 587 VTAKGNERWVRTIGKAEMVDGVCVRIYGAFQDITHRKQAEVEILNSEAKFRSLYDSTSDA 646

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V +F   G +   N A   ++  +   +     + +++        E+   D    +   
Sbjct: 647 VILFDHTGYLD-CNDAALKMFGIDSVDMLMKMPMGDLSGLNEPGM-EAARNDGCRHVREV 704

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-------TFVNVTDSVRAERALTEKN 559
           +++   + +   +   +S   +    L N   +           ++T   RAE  L E  
Sbjct: 705 YENGTHNFEWKYKRFGESKESFIAEVLLNLMKVNGKEIIQAVIRDITIRKRAELELLEAR 764

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A ++K+ F+ ++S+E+R+PL  ++GFTDLL  +   +L+  Q QY+  +  S+  
Sbjct: 765 EHAEAASKLKSEFLANMSHEIRTPLNGVVGFTDLLMKT---NLDETQQQYMSMVFQSANS 821

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L++++NDILD + ++AG ++L      L ++   V   +  +  + ++ + +     +  
Sbjct: 822 LMDIINDILDFSKIEAGKLELTPEKTDLLEICGRVADMVTYQAQQKHLEMLLNIPADIPR 881

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGST---VIL--KAARDNGDFIFSVKNNGSSIPED 733
               D  RL QI   +LSNA+ F+ KG     + L  K +  +  F FSV++ G  I   
Sbjct: 882 FVWCDSVRLRQILVNLLSNAVKFTIKGEIELKIELLNKVSGLDYTFRFSVRDTGIGIDPQ 941

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + +F  F        +R  G GLGL+I  S + L    + ++S  E  +T   
Sbjct: 942 NQRRIFEAFSQEDSSTTKRFGGTGLGLTISNSLLGLMESRLQLTSELEKGSTFFF 996


>gi|167574056|ref|ZP_02366930.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis C6786]
          Length = 764

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 106/506 (20%), Positives = 197/506 (38%), Gaps = 39/506 (7%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
           +   +L +LT  + + D+   L + N +   L   D   +   P   ++     S     
Sbjct: 128 YYEALLQSLTQGVIVSDRRGMLTYMNPAAAALIGCDATAVRGLP-FRDVFNAYDSRG--- 183

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENL 419
            +    T  E +     S+   +      +G  + +   ++P         G + +  ++
Sbjct: 184 -ERARSTALEQVLRSGASATVERHWLASRDGPRVPIAEVASPLVDSAGDMNGAVLIVRDI 242

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +     E +     ++    ++   + +   G D RI   NPA R ++  +E        
Sbjct: 243 SG----ERERAAANRMLRRLVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDV 298

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              IA    R +            I + D       G+    +      S  P+ + +  
Sbjct: 299 AMLIAPRWRRRHPLPASLSDVYEPIENVDVLCARQDGSRLRAT-----LSASPVFDDRDA 353

Query: 540 L-----TFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPLTNI 587
                 T  +  +  R ER                  ++ +K+  +  VS+ELR+PL  I
Sbjct: 354 CVALSLTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVI 413

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L
Sbjct: 414 YGWIEVLRNPAGGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDL 470

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++N+V  ++ T      + + V    +      D +RL Q+ S +LSNA  F+ +G  
Sbjct: 471 VRIVNDVTGALGTAAQAEGLDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGR 530

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
           V +   R +      V + G  I  +    VF  F          RRG+GLGLSIV    
Sbjct: 531 VTVSLMRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIA 590

Query: 766 NLHGGHVSISSSDEG-VTTINCRIPS 790
            LHGG V ++S+ +   TT    +P+
Sbjct: 591 ELHGGKVEVASAGKRLGTTFTVTLPA 616



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 69/263 (26%), Gaps = 29/263 (11%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYK-----KNTETEGIVFQKAIGESRKLFKEEIKKR 251
            L  SL   V   D+ G + + N +         T   G+ F+          +      
Sbjct: 131 ALLQSLTQGVIVSDRRGMLTYMNPAAAALIGCDATAVRGLPFRDVFNAYDSRGERARSTA 190

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GEAGIAIDVSKEITVND 303
           +        +       L   +     I  V +          G   I  D+S E     
Sbjct: 191 LEQVLRSGASATVERHWLASRDGPRVPIAEVASPLVDSAGDMNGAVLIVRDISGERERAA 250

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
                  ++     AI     +R +   N +   ++  D            +    R  +
Sbjct: 251 ANRMLRRLVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRH 310

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMF 416
            LP          ++  VY+  E         +G  L   ++++P               
Sbjct: 311 PLP---------ASLSDVYEPIENVDVLCARQDGSRLRATLSASPVFDDRDACVALSLTL 361

Query: 417 ENLTVQVDLETKYNTLVKVQGET 439
            +   Q   E + +  ++   + 
Sbjct: 362 RDTGEQRRRERRTHHSLRGARDA 384


>gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1548

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 116/594 (19%), Positives = 218/594 (36%), Gaps = 59/594 (9%)

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
                    +  LF++ +    +S   LE+N   T S L+    ++ ++           
Sbjct: 399 ATLGPLPPRAATLFEDMLPMAALSQEVLERNLH-TRSLLDQTRRQATELEE--------- 448

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN- 349
                     +         +     + I    +   +   N +F +   I    L    
Sbjct: 449 ------SRELLRRSEAFFRAVFETAGIGIVSERRGLGIDRANPAFSDFIGISEPELRGRD 502

Query: 350 ------PSNDELLEFLRSANKLPEQLNWKTWKEN--IFSVYKSSET----------HKDT 391
                 P + E LE L  +   P++L +   +          + E            +  
Sbjct: 503 LEDFFHPDDREALEAL-LSRLDPDKLEYAVPRHGNPERDGLDAGEPDQARSTITVRAEHR 561

Query: 392 WHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           +  P+G+     V     G        + +  ++T   + + +           +    +
Sbjct: 562 YLRPDGEVRWADVRCALIGDRDITPRRVTLINDITELKEQQAELKDTEAWYRGIVHSAPD 621

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + V   +GRI L NP    L   E   L+ G  +        R  +     D  A+ + 
Sbjct: 622 AMVVVDGEGRIVLCNPQLERLLGYEMGELT-GHLVEQFLPEEVRERHVKLRNDFLASPLQ 680

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNE 560
               ER+ + G  +  +   LE S+  LP +            +++   R+E  L    E
Sbjct: 681 VIGHEREVI-GVRKDGTRLPLEISLSKLPPSDRHPMSACGALRDISLRKRSEAELRRAKE 739

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              +A  +K+ F+ ++S+E+R+P+  IIG   L   ++   L+ +Q+ YV  I AS   L
Sbjct: 740 MAEEATRLKSDFLANMSHEIRTPMNAIIGMAHLALKTE---LDPRQADYVRKIRASGQHL 796

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L ++NDILD + ++AG + +  +   L  +L+ V   ++ K     +   +     +   
Sbjct: 797 LGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVSEKAATKGLEFVLDVAANVPPV 856

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMC 735
           +  D  RL QI     +NA+ F+  G  VI     + GD      F+V++ G  + ++  
Sbjct: 857 LRGDPLRLGQILINYANNAVKFTEHGEIVIHVETLETGDTDVLLRFAVRDTGIGLTDEQK 916

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +F  F        R   G GLGL+I +   +L GG V + S   G +T    
Sbjct: 917 ARLFVSFQQADTSTTRKYGGTGLGLAIAKKLADLMGGGVGVDSVPGGGSTFWFT 970



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 103/347 (29%), Gaps = 51/347 (14%)

Query: 14  IEICTLFSCKIAVFGTIAGMLLTTIIPIILLIR--QRNSLAKKVNETYSFLSEICDQLSK 71
           +E+ TL             ML    +   +L R     SL  +     + L E  + L +
Sbjct: 396 LELATLGPLPPRAATLFEDMLPMAALSQEVLERNLHTRSLLDQTRRQATELEESRELLRR 455

Query: 72  YHSLL---TENNCLTIVWDGKDETPEIIG-QLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
             +      E   + IV + +    +         I I + +      E++        L
Sbjct: 456 SEAFFRAVFETAGIGIVSERRGLGIDRANPAFSDFIGISEPELRGRDLEDFFHPDDREAL 515

Query: 128 SKATEKL---------RKEG-------------QSFDLVAETQNDCAIKIEGRVSGS--- 162
                +L          + G             Q+   +        ++ +G V  +   
Sbjct: 516 EALLSRLDPDKLEYAVPRHGNPERDGLDAGEPDQARSTITVRAEHRYLRPDGEVRWADVR 575

Query: 163 CAFLRILSLDGIY----SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           CA +    +        +++ E   +  +L +  + ++ +  S    +   D  G I+  
Sbjct: 576 CALIGDRDITPRRVTLINDITELKEQQAELKDTEAWYRGIVHSAPDAMVVVDGEGRIVLC 635

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKR--------MISSSALEKNFCETVSTLE 270
           N   ++    E       + E  +   EE+++R        + S   +  +  E +   +
Sbjct: 636 NPQLERLLGYEMGELTGHLVE--QFLPEEVRERHVKLRNDFLASPLQVIGHEREVIGVRK 693

Query: 271 HGNNKSYKIVRVLNSFGE------AGIAIDVSKEITVNDQLTHTYEI 311
            G     +I        +       G   D+S       +L    E+
Sbjct: 694 DGTRLPLEISLSKLPPSDRHPMSACGALRDISLRKRSEAELRRAKEM 740


>gi|83311949|ref|YP_422213.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946790|dbj|BAE51654.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 676

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 129/661 (19%), Positives = 238/661 (36%), Gaps = 38/661 (5%)

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           G   G+ A L  +         A+ +   +     +       D     V   D+   ++
Sbjct: 12  GMAVGAAATLLAMRRWRRLGSSADGSYALESQRQLLEALGNSRDG----VALYDKTNRLI 67

Query: 217 WANISYKKNTE------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
             N  Y++           G  F+  + E   L +      +    +       T S  +
Sbjct: 68  TCNERYRQLLSPIKESLVPGARFEDLMAELANL-EHMDAAWLGRKLSGGGLTDATASDDK 126

Query: 271 HGNNKSYKIVRVLN-SFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQN 325
             + +   +        G+  I  D+++       L  T   L      +   I   D+ 
Sbjct: 127 FRDGQWITVNAYATLDGGQLRILRDITQRKQAQISLEDTVSWLKGVMDTVVDGIVTIDET 186

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             +   N +  +L+      +        +   +    +      +  +  N F      
Sbjct: 187 GTVLSFNPAAEKLFGWSADQVVGRH----VGMLISDPRQDGRGAGFPAYLANGFPEAGPG 242

Query: 386 ETHKDTWHLPNGQTL--HVIVTSNPRGGT---IWMFENLTVQVDLET-------KYNTLV 433
               +     NG      + V    +G     I +  +++ +   E        + +   
Sbjct: 243 GREVEGLRR-NGTRFPMELAVAEMHQGDMLTFIGVIRDVSERRKNELALLDSKNRLSLQA 301

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-HIRNIAATCSRYYN 492
                 ID++ +GVAVF  D  +   N +   +    +  ++PGT  I    A  +    
Sbjct: 302 DRLQGIIDNMPQGVAVFASDDALIALNESAVRMLGLPQAEITPGTIDISLFMALLAANDT 361

Query: 493 ESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                     A +     ER  +       S  ++E     +P    +L+F +VTD  R 
Sbjct: 362 PPGRHSAQLTADLAESVRERPEMVFEHFAPSGLIMEVRSSSMPGGGLILSFTDVTDRKRV 421

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYV 610
           E+ L E  +   + +  KN+F+ ++S+ELR+PL  IIGF++++K    G L       YV
Sbjct: 422 EQTLREAKDEAERGNRAKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRTYV 481

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S   LL L+NDILD++  +AG+  L  + + + DL+    + +  +     I + 
Sbjct: 482 DDIHESGMHLLELINDILDMSKAEAGMTDLMEAAVHVPDLVRGAIRLLTRRAENAGITLS 541

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 L   +AD +RL Q+   + SNA+ F+  G  V + A      FI +V + G  +
Sbjct: 542 EDLPPTLPLLLADERRLRQVILNLGSNAVKFTDDGGAVTIGAKVTEAGFIITVADTGIGM 601

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    V   FV        +  G GLGL + ++ I  HGG + + S     T      
Sbjct: 602 TPEELLRVMEPFVQADTRLSRKYEGSGLGLPLAKALICAHGGTLHLDSQPGRGTVATVTF 661

Query: 789 P 789
           P
Sbjct: 662 P 662


>gi|330505536|ref|YP_004382405.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
 gi|328919822|gb|AEB60653.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
          Length = 1277

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 120/643 (18%), Positives = 226/643 (35%), Gaps = 58/643 (9%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTETEG 230
            GI S+++E     + L    S F+ L  +L  +V+    D    + + +           
Sbjct: 661  GIASDISELLQATRALQKSESRFRGLVANLPGVVYRCADDAQRSMRYVSDEIANLCGYSA 720

Query: 231  IVFQKAIGESRKLF---KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
              F      S        +    +  S +   +   E    L H    +  +     +  
Sbjct: 721  SDFIDNHVRSYSSIVHPDDLPSTQRASEAIKRQESFELTYRLRHAEGHNVWVREKGRAEY 780

Query: 287  -------GEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
                      G   DVS+   + ++L           +     +A+   +      N   
Sbjct: 781  DSHGRLLWIDGFIWDVSERQAIEEELRLSQQRFLNAFNTAPQGMALVGPDGRWLEVNAEL 840

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
              +       L          E     +   +Q N         S Y+  + + D     
Sbjct: 841  CRMLGYSREELQAR----TYQEVTHPDDLDADQQNVANLLAGRISSYQMEKRYLD----K 892

Query: 396  NGQTLHVIVT-SNPRGG------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             G+TL V+++ S  R G       +   ++ + +V  E             +D++ + + 
Sbjct: 893  QGRTLWVLLSVSLVRDGEGQPVHFVSQVQDFSDRVAAERAVREREHYLSTLLDNVVDAIV 952

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                 GRI+  N A   ++   ++ ++ G +I  +    +    +    D F        
Sbjct: 953  SIDEQGRIETFNHAAEKIFGYLQDEVA-GHNITQLIPDLAGEVRQGCALDEFGE------ 1005

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                 + G  +      +E ++  + +         + D    +R            +++
Sbjct: 1006 -----MDGVRQNGERFPMELAMSQISHQGQRRFITVIRDITERKR-----------IEQM 1049

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            KN FV  VS+ELR+PLT I G   L+    LG +     Q +    ++S  L  L+ND+L
Sbjct: 1050 KNEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQTMRQMLAIAHSNSLRLSALINDLL 1109

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            D+  + AG M+ +    ++  LL +          ++ + +++  +        D QRL 
Sbjct: 1110 DMEKLVAGKMQFDLQARLMQPLLEQALLHNQPYAEQHQVELRLQVEDD-ALVNVDTQRLA 1168

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH- 747
            Q+ + +LSNA  FS  G  V++           SV +NG  IPE     +F++F      
Sbjct: 1169 QVMANLLSNAAKFSPPGGNVVVCLQTLGEALRVSVSDNGPGIPEAFKPRIFSKFSQADSG 1228

Query: 748  -RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               Q+ G GLGL+I +  I   GG +   SS     T    +P
Sbjct: 1229 DTRQQGGTGLGLAICKEIIERMGGQIGFDSSPGQGATFWFELP 1271



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/423 (12%), Positives = 137/423 (32%), Gaps = 41/423 (9%)

Query: 27   FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86
             G I G L        LL   R +L K  +     ++ +   + +      ++   ++ +
Sbjct: 653  CGQITGFLGIASDISELLQATR-ALQKSESRFRGLVANLPGVVYRC----ADDAQRSMRY 707

Query: 87   DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE 146
               +     I  L         D  + S+ + +         +A+E ++++ +SF+L   
Sbjct: 708  VSDE-----IANLCGYSASDFIDNHVRSYSSIVHPDDLPSTQRASEAIKRQ-ESFELTYR 761

Query: 147  TQN----DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
             ++    +  ++ +GR        R+L +DG   +++E     ++L      F   F++ 
Sbjct: 762  LRHAEGHNVWVREKGRAEYDSHG-RLLWIDGFIWDVSERQAIEEELRLSQQRFLNAFNTA 820

Query: 203  DFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESRKLFKEEIKKRMISSSAL 258
               +      G  L  N    +         Q    + +     L  ++     + +  +
Sbjct: 821  PQGMALVGPDGRWLEVNAELCRMLGYSREELQARTYQEVTHPDDLDADQQNVANLLAGRI 880

Query: 259  EKNFCETVSTLEHGNNKSYKIVRVLNSFGE----------AGIAIDVSKEITVNDQLTHT 308
                 E     + G      +   L   GE             +  V+ E  V ++  + 
Sbjct: 881  SSYQMEKRYLDKQGRTLWVLLSVSLVRDGEGQPVHFVSQVQDFSDRVAAERAVREREHYL 940

Query: 309  YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
              +L N+  AI   D+   ++  N +  +++      +A +     + +      +    
Sbjct: 941  STLLDNVVDAIVSIDEQGRIETFNHAAEKIFGYLQDEVAGHNITQLIPDLAGEVRQGCAL 1000

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
              +      +  V ++ E       +         ++   +   I +  ++T +  +E  
Sbjct: 1001 DEF----GEMDGVRQNGERFPMELAMS-------QISHQGQRRFITVIRDITERKRIEQM 1049

Query: 429  YNT 431
             N 
Sbjct: 1050 KNE 1052


>gi|257094180|ref|YP_003167821.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046704|gb|ACV35892.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1138

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 125/660 (18%), Positives = 252/660 (38%), Gaps = 68/660 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
               + ++L     +   +F++    +     +G+IL AN ++++ T   G    + IG 
Sbjct: 317 RIAAQQRELERERRLVASVFEASAASILITTASGEILAANPAFEQIT---GYSRAEVIGI 373

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--------SYKIVRVLNSFGEA-- 289
           + ++ K  +          E      V   E  N K        +  I  V++  G+   
Sbjct: 374 NPRILKSGLNPPQTYEDLWETISHGAVWRGELQNRKKSGELYWEALAISPVVDDHGKITH 433

Query: 290 --GIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             G+A D+++    E  +    +     L + T  I + D+N      NR+F+++W+   
Sbjct: 434 FIGVAPDITEGKLAEQALRASFSLLDATLDSTTDGILVVDRNGKAAKWNRAFLDMWQAPA 493

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHV 402
              A +     +      A  L +  +       +   + +      D   L +G+    
Sbjct: 494 VAAAADNEEAVV------AQALGQLASSGRGLTEVTGPHPNPAAGSLDQIELADGRVFER 547

Query: 403 IVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIK 457
                  G    G +W F ++T Q   E +     +            + V   + G I 
Sbjct: 548 YSQPQRIGEQIVGRVWCFHDVTRQKRTEAELRASEQQFRALFADSPVSILVHDRESGEII 607

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-----ERK 512
            +NP   + +          + ++ + A+           +  + I  +        E +
Sbjct: 608 DANPTAWTAYGL--------SSLQELQASDFWLAPPYSFAEALSWIRKAAAHGKQQFEWR 659

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL---------- 562
           + +   EL  + V    +      + + T ++++D  RAE+ L E  E L          
Sbjct: 660 NQRRDGELFWEHVTLSRVTIGGVERILATAIDISDRKRAEQQLAEYGEHLEVLVDERTTA 719

Query: 563 -----------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                      + A+  K  F+  +S+ELR+PL  I+GF  LL       L+++Q+  V+
Sbjct: 720 LAQARTAIADAQAANAAKTEFLSRMSHELRTPLNAILGFGQLLALPGDAPLSAQQADNVQ 779

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +   LL  VN++LDLA +++G ++L+   + L+ ++ E    +        + I  
Sbjct: 780 EILRAGRHLLEQVNEVLDLARIESGRIELSLEAVPLSSVVAECVALVRPLAEARGVSIDA 839

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D       AD  RL Q+   +LSNA+ ++ +  TV L   R+     F+V ++G  I 
Sbjct: 840 AIDDS--MLQADPTRLRQVILNLLSNAIKYNREHGTVRLDNTREGERLRFAVTDSGRGIA 897

Query: 732 EDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +    +F  F       +   G G+GL++ +  + +  G + + S     +T +  +P 
Sbjct: 898 SEHLPRLFQPFERLESSYEGIEGSGVGLALSKRLVEMMAGSIRVDSRIGVGSTFSFDLPL 957


>gi|49474041|ref|YP_032083.1| two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
 gi|49239545|emb|CAF25902.1| Two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
          Length = 773

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 208/497 (41%), Gaps = 42/497 (8%)

Query: 329 QFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            + +R+  E+   +    L +      +          P   N+    + + S  K    
Sbjct: 285 VYWSRAMYEMLGYVPQDALLSISQITGI--------ISPNDANFFDLAQELMSGKKKHID 336

Query: 388 HKDTWHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                   +G  + + + +          + +  +++ Q     +         + I+++
Sbjct: 337 INVPMRHADGHYVWMRIRAEVTDEEEPHLVGISFDISEQHQFAEETAQADLRIRDAIENI 396

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           SE   ++  +GR+ +SN  F       +  L PG     + A      NE    D     
Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQILQPGIQRETVEAMARPAINEYPLKDDGTGN 456

Query: 504 ITSFD----------DERKSLQGTLELLSDSVLE---------------YSIIPLPNAQT 538
           +TS            +ER++  G L  +   + E               +S I       
Sbjct: 457 LTSIRQTADGCWLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQELKRAR 516

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                  T+  +  ++L  + E    A++ K+ F+ ++S+ELR+PL  I+GF+D++  S 
Sbjct: 517 GNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGFSDIMLQST 576

Query: 599 LGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            G L SK+  +Y+  I  S + LL L+NDILD++ ++AG   ++   I L  +++E  ++
Sbjct: 577 FGPLGSKRYKEYMRDIYNSGSHLLTLINDILDMSKIEAGRFTVDCKNIDLEPIISEALRT 636

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +  E NI +      KL + V D + + QIF  ++SNA+ F+  G  + + A +   
Sbjct: 637 LIPQAQEKNIFVTTNIATKLHAEV-DGRAIKQIFLNLISNAVKFTPSGGNIDVCALKKKN 695

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
           + +F +K+ G  IP+   K +   F    +       G GLGL+I  S + LH G + I 
Sbjct: 696 NLVFKIKDTGVGIPQSAIKKLGQPFEQVENQLTKTYTGSGLGLAISRSLLELHKGKLEII 755

Query: 776 SSDEGVTTINCRIPSKE 792
           S +   TT+   IP K+
Sbjct: 756 SKEMKGTTVTITIPIKQ 772



 Score = 64.6 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 89/285 (31%), Gaps = 35/285 (12%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           I +   +   +  +    +++ +      D+ +     +G + W+   Y    E  G V 
Sbjct: 248 IRARKTDLISEKIQNRIDMAMMRGRCGLWDWNM----ASGRVYWSRAMY----EMLGYVP 299

Query: 234 QKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVSTLE---HGNNKSYKIVRVLNS 285
           Q A+    ++       +     +       K     ++       G+    +I   +  
Sbjct: 300 QDALLSISQITGIISPNDANFFDLAQELMSGKKKHIDINVPMRHADGHYVWMRIRAEVTD 359

Query: 286 FGE---AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
             E    GI+ D+S++    ++         + + N++ +  ++D    L   N  F E 
Sbjct: 360 EEEPHLVGISFDISEQHQFAEETAQADLRIRDAIENISESFVLWDSEGRLVMSNSKFCEY 419

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             I    L      + +    R A      +N    K++      S           +G 
Sbjct: 420 AAIPKQILQPGIQRETVEAMARPA------INEYPLKDDGTGNLTS------IRQTADGC 467

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            L +       GG + +  +++     + K+    +     I  L
Sbjct: 468 WLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQEL 512


>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 719

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 100/514 (19%), Positives = 213/514 (41%), Gaps = 34/514 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           EI +  +      I+    + I + D +  + F N     +  +    +     ND + +
Sbjct: 70  EIELQRERDLMGSIMETSPMGILVMDNDGKIIFANDQAARVHGVAREEIIGKQHNDPIWK 129

Query: 358 F-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGG-- 411
                 +  PE+   +     +  +  +    +   H  +G+ + + + ++P     G  
Sbjct: 130 ITAHDGSPFPEE---RLAFNRVMKIRNAVLDIRHAIHWLDGRKVLLSINASPIISDDGSI 186

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK- 468
              +   E++T +  +E             +      + +  PD +I   N     L+  
Sbjct: 187 KKVVASVEDITTRKKVEEALKESAYRFRSLVKTAESVIILLSPDKKILEFNRMAEQLFGR 246

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T    L    +   +       +N      L    +   ++   +  G      + ++++
Sbjct: 247 TRHEVLGRDYYELFVPERFWPDHNRQFATVLSGNPLRLLENYVLARGGE-----ERMIQW 301

Query: 529 SIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           S+  L +A       +    ++T+  R+E  L E  +A  +A   K+ F+ ++S+E+R+P
Sbjct: 302 SLSRLLDAKGGALGVLAVGQDITERKRSEVELCEARDAAEEASRAKSEFLANMSHEIRTP 361

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           ++ IIG +++   +   +L  +Q  Y+  +  ++  LL+++NDILD++ ++A  M+L   
Sbjct: 362 ISAIIGMSEMTLNT---NLTGEQQGYLVTVKKAAESLLHIINDILDISKIEARKMELRPE 418

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L ++L +    +  +  E  I ++  +SD     +  D  RL QI   ++ NA+ F+
Sbjct: 419 DFNLYEMLEKQLSVLKVQAEEKGIELRANVSDDVSRCYHGDEYRLGQIIINLVGNAIKFT 478

Query: 703 SKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGL 756
            KG    S   + +  +     F VK+ G  I ED C+ +F  FV     +  +  G GL
Sbjct: 479 EKGYVEVSVDHVGSFEEGAVLEFRVKDTGIGISEDKCEKLFESFVQLNAGYSKRHPGSGL 538

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTT--INCRI 788
           GL+I    + + GGH++ SS +   +      R+
Sbjct: 539 GLAISRQLVEMMGGHITFSSREGWGSEFKFTVRL 572



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 90/296 (30%), Gaps = 44/296 (14%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE---------GIVFQKAI 237
           +L     +   + ++    +   D  G I++AN    +                   K  
Sbjct: 72  ELQRERDLMGSIMETSPMGILVMDNDGKIIFANDQAARVHGVAREEIIGKQHNDPIWKIT 131

Query: 238 GESRKLFKEE--IKKRMISSSALEKNFCETVSTLEHGNNKS-YKIVRVLNSFGEAGIAI- 293
                 F EE     R++       +    +  L+            +++  G     + 
Sbjct: 132 AHDGSPFPEERLAFNRVMKIRNAVLDIRHAIHWLDGRKVLLSINASPIISDDGSIKKVVA 191

Query: 294 ---DVSKEITVNDQLTHTYEILHNL---TVAIAI-FDQNRYLQFHNRSFVELWEIDLAFL 346
              D++    V + L  +     +L     ++ I    ++ +   NR   +L+       
Sbjct: 192 SVEDITTRKKVEEALKESAYRFRSLVKTAESVIILLSPDKKILEFNRMAEQLFG------ 245

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
               +  E+L        +PE+      ++    +  +     + + L  G    +I  S
Sbjct: 246 ---RTRHEVLGRDYYELFVPERFWPDHNRQFATVLSGNPLRLLENYVLARGGEERMIQWS 302

Query: 407 NPR-----GGTIWMF---ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
             R     GG + +    +++T +   E +            + + E + ++S  +
Sbjct: 303 LSRLLDAKGGALGVLAVGQDITERKRSEVELCEARDAAEEASRAKSEFLANMSHEI 358


>gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
 gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
          Length = 571

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 218 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 264

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 265 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 321

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L++ ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 322 NHEWKGIV----LVFHDITELKRLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 377

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 378 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNK 436

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 437 AGEKEISLQVNV-LKRVSVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 495

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 496 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 555

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 556 EGTTFTVVLPK 566



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 193 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 250

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 251 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 296

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 297 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKRLEQMRKDFL 349


>gi|17232665|ref|NP_489213.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134311|dbj|BAB76872.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 117/665 (17%), Positives = 237/665 (35%), Gaps = 105/665 (15%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGESRKLF---- 244
           + + + +S ++ +      G IL  N + ++       E  G    + I +  ++     
Sbjct: 63  LQQAILNSANYTIISTTPDGIILTFNAAAQRWLGYTAEEVIGKKTPEMIHDKNEVVKVAQ 122

Query: 245 --------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GE 288
                     E       + A      E   T    +   + ++  +           G 
Sbjct: 123 ELSQELGVTIEPGFEAFVAKARLGQVEEREWTYIRKDGSRFPVLLSVTPLYDAEKNITGF 182

Query: 289 AGIAIDVSKEITVNDQLT---HTYEILHN-LTVAIAIFDQNRYLQFHNRSFVELWE---- 340
            GI  D++        L    + Y  L     V I   D      F N     L      
Sbjct: 183 LGIGSDITARKAAEAALRESEYRYATLAQTAPVGIFRNDAFGRCIFANERACNLIGSPLK 242

Query: 341 --IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             +   ++ +   +D  L  +R             W + +          +  +  PN  
Sbjct: 243 DILGEGWIQSLHPDDR-LRIVRE------------WNQAVQQNL--PFKAEYRFRHPNNV 287

Query: 399 TLHVIVTSNPRGGT-------IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
              VI  + P  G+       I    ++  +   E +   L +     ++   EG++   
Sbjct: 288 INWVIYQAIPERGSNGEVTGYIGTMTDINDRKRAEEELLHLSQ----ALESAVEGISQLD 343

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             G     NPA+  +   +   +        I    +   +  D   + AA      + +
Sbjct: 344 TQGHYIKVNPAYAKITGYKPEEM--------IGMEWALTVHPDDKEKMMAAYHQMLKNGK 395

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
             ++        S     ++ +         +     ++            R+ + +K+ 
Sbjct: 396 VEIEARAMRKDGSAFYKQVVMVKAYNQQQECIGHYCFMK-------DISDRREVERLKDE 448

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV  VS+ELR+PLT+I G  DLL +  + + +    + +   + ++  L+ L+NDILD+ 
Sbjct: 449 FVSVVSHELRTPLTSISGALDLLASGVVPAGSEDAQRMLNIAANNTDRLVRLINDILDIE 508

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +++G +++        DL+ +  + +     +  I++ +          AD  R++Q+F
Sbjct: 509 RIESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQLSM--SPLSAHLWADSDRIIQVF 566

Query: 692 SKILSNAMDFSSKGSTVILKAAR-DNGD------------------------FIFSVKNN 726
           + ++SNA+ FS  G+TV + A   + G+                         +F+VK+ 
Sbjct: 567 TNLISNAIKFSPTGATVWVTAKILEKGELEKSQTPIPLYPQTPIPLYPHTPIILFAVKDQ 626

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP D  +S+F RF  V  +   ++ G GLGL+I  S +  HGG +   S+    +T 
Sbjct: 627 GRGIPADKLESIFERFGQVDASDSRKKGGTGLGLAICRSILQHHGGQIWAESTSGEGSTF 686

Query: 785 NCRIP 789
           +  +P
Sbjct: 687 SFTLP 691



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 65/483 (13%), Positives = 154/483 (31%), Gaps = 76/483 (15%)

Query: 98  QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA-TEKLRKEGQSFDLVAETQNDCAIKIE 156
           +L Q + +         FE ++      ++ +     +RK+G  F ++           E
Sbjct: 123 ELSQELGVTIEPG----FEAFVAKARLGQVEEREWTYIRKDGSRFPVLLSVT--PLYDAE 176

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
             ++G           GI S++         L      +  L  +    ++  D  G  +
Sbjct: 177 KNITG---------FLGIGSDITARKAAEAALRESEYRYATLAQTAPVGIFRNDAFGRCI 227

Query: 217 WANISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRMIS--SSALEKNFCETV-STLEHG 272
           +AN   ++     G   +  +GE   +    + + R++   + A+++N          H 
Sbjct: 228 FAN---ERACNLIGSPLKDILGEGWIQSLHPDDRLRIVREWNQAVQQNLPFKAEYRFRHP 284

Query: 273 NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
           NN    ++              G  G   D++      ++L H  + L +    I+  D 
Sbjct: 285 NNVINWVIYQAIPERGSNGEVTGYIGTMTDINDRKRAEEELLHLSQALESAVEGISQLDT 344

Query: 325 NRYLQFHNRSFVELWE------IDLAFLATNPSNDELLEFLRSANKLPE---QLNWKTWK 375
             +    N ++ ++        I + +  T   +D+          L     ++  +  +
Sbjct: 345 QGHYIKVNPAYAKITGYKPEEMIGMEWALTVHPDDKEKMMAAYHQMLKNGKVEIEARAMR 404

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--GTIWMFENLTVQVDLET------ 427
           ++  + YK              Q + V   +  +   G     ++++ + ++E       
Sbjct: 405 KDGSAFYK--------------QVVMVKAYNQQQECIGHYCFMKDISDRREVERLKDEFV 450

Query: 428 -----KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF---RSLWKTEENRLSPGTH 479
                +  T +      +D L+ GV   G +   ++ N A      L +   + L     
Sbjct: 451 SVVSHELRTPLTSISGALDLLASGVVPAGSEDAQRMLNIAANNTDRLVRLINDILDIERI 510

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDE------RKSLQGTLELLSDSVLEYSIIPL 533
                    +  N +D       ++    ++         L   L   SD +++     +
Sbjct: 511 ESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQLSMSPLSAHLWADSDRIIQVFTNLI 570

Query: 534 PNA 536
            NA
Sbjct: 571 SNA 573


>gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
 gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
          Length = 545

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 192 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 238

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 239 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 295

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 296 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 351

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ + +LL ++   +  K
Sbjct: 352 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNK 410

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 411 AGEKEISLQVNA-LKRVSVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 469

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 470 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 529

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 530 EGTTFTVVLPK 540



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 167 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 224

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 225 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 270

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 271 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 323


>gi|319406908|emb|CBI80543.1| two-component sensor histidine kinase [Bartonella sp. 1-1C]
          Length = 769

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 109/496 (21%), Positives = 213/496 (42%), Gaps = 40/496 (8%)

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            + +R+  E+       L   P N  L     +A   P+  N+    + +    K     
Sbjct: 281 VYWSRAMYEM-------LGYEPQNALLSISQITAIIDPKDANFFELAQELMGSEKKHIDI 333

Query: 389 KDTWHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                   G  + + + +          + +  +++ Q     +         + I+++S
Sbjct: 334 NVPMRHAEGHYVWMRIRAEVTDEEEPHLVGISFDISEQHQFAEQTARADLRIRDAIENIS 393

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           E   ++  +GR+ +SN  F       +  L  G     + A      +E       +  +
Sbjct: 394 ESFVLWDSEGRLVMSNSKFCEYASIPKQMLQSGIERATVEAMSRPAISEYPLKIDESGNL 453

Query: 505 TSFD----------DERKSLQGTLELLSDSVLE---------------YSIIPLPNAQTM 539
           TS            +ER++  G L  +   + E               +S I        
Sbjct: 454 TSIRQTADGYWLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQELKRARG 513

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                 T+  +  ++L E+ E    A++ K+ F+ ++S+ELR+PL  I+GF++++  S  
Sbjct: 514 NAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPLNAILGFSEIMLQSTF 573

Query: 600 GSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           G L S++  +Y+  I  S T LL L+NDILD++ ++AG   L+   I L  +++E  +++
Sbjct: 574 GPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEPIISETIRTL 633

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +     I +    + KL + V D + + QIF  ++SNA+ F+  G ++ ++A + N +
Sbjct: 634 TPQAQAKKISLTTNIEQKLHADV-DCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNN 692

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IFS+K+ G  IP++  K +   F    +       G GLGL+I  S + LH G + I+S
Sbjct: 693 LIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITS 752

Query: 777 SDEGVTTINCRIPSKE 792
            +   T +   +P ++
Sbjct: 753 KEAKGTIVTIIMPIQQ 768



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 84/282 (29%), Gaps = 29/282 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGI 231
             +   +   +  +    +++ +      D+ +     +G + W+   Y+         +
Sbjct: 244 TRARNTDLISEKIQNRIDMAMMRGRCGLWDWNM----ASGRVYWSRAMYEMLGYEPQNAL 299

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--SYKIVRVLNSFGE- 288
           +    I            +        EK   +    + H        +I   +    E 
Sbjct: 300 LSISQITAIIDPKDANFFELAQELMGSEKKHIDINVPMRHAEGHYVWMRIRAEVTDEEEP 359

Query: 289 --AGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              GI+ D+S++    +Q         + + N++ +  ++D    L   N  F E   I 
Sbjct: 360 HLVGISFDISEQHQFAEQTARADLRIRDAIENISESFVLWDSEGRLVMSNSKFCEYASIP 419

Query: 343 LAFLATNPSNDELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
              L +      +    R A ++ P +++              S          +G  L 
Sbjct: 420 KQMLQSGIERATVEAMSRPAISEYPLKID-------------ESGNLTSIRQTADGYWLK 466

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           +       GG + +  +++     + K+    +     I  L
Sbjct: 467 INERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQEL 508


>gi|303248462|ref|ZP_07334721.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
 gi|302490173|gb|EFL50092.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
          Length = 1324

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 137/806 (16%), Positives = 272/806 (33%), Gaps = 97/806 (12%)

Query: 60   SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWL 119
            +  +    +  +Y  L           D     P  +     R+   +   D L      
Sbjct: 263  AEGAAFRKRAEQYRDLYDNAAQGLFRLDTAG-RPLAVNTTLARLFGCRDANDCLRQAR-- 319

Query: 120  KFHHYIKLSKATEK---LRKEGQS----FDLVAETQNDCAIKIEGRVSGSC-AFLRILSL 171
               H ++L     +   +R  GQ+    F+      +    +I+  V     A    + L
Sbjct: 320  TDEHLVRLDIPQRRELLVRALGQADPVFFETHFYHHDGSMARIKCYVRAQRDALGSPVCL 379

Query: 172  DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------N 225
            +G  ++ +           +   ++ + + +  L+   D AG +L+ N ++ +       
Sbjct: 380  EGACADFSALPPPENAAGEN--GYRSIVEHITELICRIDAAGRLLFVNTAFARYWGKTAE 437

Query: 226  TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                         E   L     +   IS       F   V   +        I R +  
Sbjct: 438  ACVAENFRSPMPDEDADLVAR--RLAAISPVRPTTGFEHRVLRPDGRIRWQRWIYRAMFD 495

Query: 286  FGE-----AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                      +  DV+     E  +  +      +L  L +A+   D  R     N++F 
Sbjct: 496  EAGTLCEYQAVGRDVTARKLAEERLRAEHARARNMLEALPLAVFFKDVERRFTGCNQAFE 555

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSS-ETHKDTWHL 394
                I    L        L +FL  A+  P   ++ +   +    VY++   T     H+
Sbjct: 556  TQSGIARERLVGG----TLDDFLGEADARPYHAIDRELLAKGGRQVYEAVLPTPAGARHM 611

Query: 395  PNGQTLHVIVTSNPRGGTIWMFENLTVQV------------------------------- 423
               + L +        G I    ++T +                                
Sbjct: 612  IVHKGL-LHDAGGAVAGIIGAAIDITERKLADRAAVQVRDALEAEALRLRQRMAGAIEAR 670

Query: 424  -DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               E++     +     +  + +G+ V  PD  +  SN A R+L+      +  G    +
Sbjct: 671  EQAESRLRRERRFLDTVLSGIQDGICVLTPDLTVTSSNKAMRALYAERGEMV--GRKCFD 728

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-----AQ 537
            +        N+       A    +     K   G+    +   +E    PL +     + 
Sbjct: 729  LFHGRGMPCNDCPSLRALATSKLAISLVPKIESGS----ASGWVELFCYPLFDDDGVVSG 784

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    ++T   R E  L +  E    A + K +F+ ++S+E+R+PL  ++G+  L+   
Sbjct: 785  VVEIVRDITAGKRLEAELADALERAEGASQAKGAFLANMSHEIRTPLNAVLGYVQLMLAD 844

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +   L  +Q + +  +  S+  LL+++NDILD + ++AG M+L      L   L  V + 
Sbjct: 845  R---LEPRQRERLTVVEESAGTLLSIINDILDYSKIEAGRMELKAEPFDLVRGLEGVLKE 901

Query: 658  IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                     + + +     +  +   D  RL Q+   +++NA+ ++ KG   +  A  D 
Sbjct: 902  QEVLAKAKGLDLVLDIAENVPGAVRGDGLRLRQVLRNLVNNAVKYTDKGGVRLGVAIADA 961

Query: 717  G-----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
                           F+V + G  IP +  +++F+ F        +R  G GLGL+I   
Sbjct: 962  PCAASGGEGGRLWLRFTVADTGIGIPYEQQETIFDSFTQIDGGLTKRQAGTGLGLAICRR 1021

Query: 764  FINLHGGHVSISSSDEGVTTINCRIP 789
               L GG +S+ S+    +      P
Sbjct: 1022 LAGLMGGTISLESTPGQGSAFRLECP 1047



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 100/365 (27%), Gaps = 39/365 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
              G + G   +     +  + SEL     +          ++ L+D+    ++  D AG
Sbjct: 238 DAAGYLLGLLTW---TDVAQVVSELLSA-AEGAAFRKRAEQYRDLYDNAAQGLFRLDTAG 293

Query: 214 DILWANISYKKN---TETEGIVFQKAIGESRKLFKEEIKKRM--ISSSALEKNFCE---- 264
             L  N +  +     +    + Q    E         ++ +   +    +  F E    
Sbjct: 294 RPLAVNTTLARLFGCRDANDCLRQARTDEHLVRLDIPQRRELLVRALGQADPVFFETHFY 353

Query: 265 -------TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
                   +         +      L        A+   +             I+ ++T 
Sbjct: 354 HHDGSMARIKCYVRAQRDALGSPVCLEGACADFSALPPPENAAGE---NGYRSIVEHITE 410

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            I   D    L F N +F   W               + +         E  +    +  
Sbjct: 411 LICRIDAAGRLLFVNTAFARYWGKTAEACVAENFRSPMPD---------EDADLVARRLA 461

Query: 378 IFSVYKSSETHKDTWHLPNGQTLH---VIVTSNPRGGTIWMFE----NLTVQVDLETKYN 430
             S  + +   +     P+G+      +        GT+  ++    ++T +   E +  
Sbjct: 462 AISPVRPTTGFEHRVLRPDGRIRWQRWIYRAMFDEAGTLCEYQAVGRDVTARKLAEERLR 521

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                    ++ L   V     + R    N AF +       RL  GT    +    +R 
Sbjct: 522 AEHARARNMLEALPLAVFFKDVERRFTGCNQAFETQSGIARERLVGGTLDDFLGEADARP 581

Query: 491 YNESD 495
           Y+  D
Sbjct: 582 YHAID 586



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/472 (12%), Positives = 124/472 (26%), Gaps = 51/472 (10%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
           +        LR       L A ++    +  +GR  G  A   +  L G   E    T+ 
Sbjct: 85  LDTDYLPAALRH-----LLAAPSRRLAVVDAKGRAVGILAPFHVTRLCGQIGEFPGRTVA 139

Query: 185 CKKLSNHISVFKVLFDSLD--FLVWHRDQAGDILWANI-----SY--------------K 223
                  ++    + ++L        R   G ++ A       ++               
Sbjct: 140 SAMARAVVTA--AVGETLPSVLARMIRTGVGGVVVAEADRPRGAFTTRDAVALLAGGRDI 197

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
            N   E ++    +  S +L   E    M  + A      +    L  G      + +V+
Sbjct: 198 ANCRVEAVMRAPVVAISPQLPLTEAVSGMDGAGAGRLAVTDAAGYLL-GLLTWTDVAQVV 256

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
           +    A       +      +     ++  N    +   D        N +   L+    
Sbjct: 257 SELLSAA------EGAAFRKRAEQYRDLYDNAAQGLFRLDTAGRPLAVNTTLARLFGCRD 310

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLH 401
           A        ++ L   R+   L  +L+    +E +      ++    +  ++  +G    
Sbjct: 311 A--------NDCLRQARTDEHL-VRLDIPQRRELLVRALGQADPVFFETHFYHHDGSMAR 361

Query: 402 ----VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRI 456
               V    +  G  + +         L    N   +      ++H++E +      GR+
Sbjct: 362 IKCYVRAQRDALGSPVCLEGACADFSALPPPENAAGENGYRSIVEHITELICRIDAAGRL 421

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N AF   W               +    +                T F+       G
Sbjct: 422 LFVNTAFARYWGKTAEACVAENFRSPMPDEDADLVARRLAAISPVRPTTGFEHRVLRPDG 481

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +                  +      +VT    AE  L  ++   R   E 
Sbjct: 482 RIRWQRWIYRAMFDEAGTLCEYQAVGRDVTARKLAEERLRAEHARARNMLEA 533


>gi|71908367|ref|YP_285954.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847988|gb|AAZ47484.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1275

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 120/652 (18%), Positives = 244/652 (37%), Gaps = 61/652 (9%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
                L+     F+   +S    +W  D      + + + ++    +             
Sbjct: 344 QANDALAASNQRFRDFSESSADWLWETDANLRFSYFSENLQRICGIDPQKVLGKARSELW 403

Query: 243 LFKEEIKKRMISSSALEKNFCETVS------TLEHGNNKSYKIVRVLNSFGEAGIA---- 292
           L  E  K   ++         E           + G +       +     E   A    
Sbjct: 404 LNDEINKPDALAGHLAVLENREAFRDFEYCLLNDRGEHLWLLASGIPYFDKEGHFAGYRG 463

Query: 293 ----IDVSKEITVNDQLTH--TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
               I V K++ +  + +     E + N++V   I+D+   L   N ++++++      +
Sbjct: 464 IGQNITVRKDLELAAEKSAKLLREAVENVSVGFTIYDEEDRLVICNETYLDIYSDSSDLI 523

Query: 347 ATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                  +++       + PE Q +   W  +  + ++  +       L +G+ L +I  
Sbjct: 524 VPGMHFADIIRKGAERGQYPEAQGDIDGWVCSRVAQHQHPDGLAIEQELNDGRWLLIIEN 583

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
             P G  +    ++T +   E +   L       ++  +EG+ +   D  I+  N AF  
Sbjct: 584 RTPSGYIVGNRIDITARKQAERQLLLL----SMAVEQSTEGILITDVDANIEYVNEAFVR 639

Query: 466 LWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSD 523
           +     E  +     I +   T    Y E         +      ++RKS +   E L  
Sbjct: 640 ISGFSREEAIGQTPRILDSGLTPRETYAEMWAVLSRGQLWQGELINKRKSGEIYTERL-- 697

Query: 524 SVLEYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNS-------- 571
                +I+P+     +  +     +VT+  R    L      L +    + +        
Sbjct: 698 -----TIMPMRQDGRVTHYVAVKEDVTEKRRNADELERHRHHLEELVAERTAELAVAHEA 752

Query: 572 ----------FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                     F+ ++S+E+R+P+  I+G T +L+ +     +S Q+  +  I+AS+  LL
Sbjct: 753 AEAASRAKSAFLANMSHEIRTPMNAIVGLTYMLRRTI---TDSGQADKLGKIAASADHLL 809

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD++ ++A  + L+ S   L +LL+ V   +  ++ E  + + + +D  LG  +
Sbjct: 810 GVINDILDISKIEANKLALDQSEFNLEELLSRVTSMVIDRVREKRLELIIDTDASLGFLM 869

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL Q     L NA+ F+  GS V    +++ + ++    F V++ G  +  +    
Sbjct: 870 GDATRLGQSLINYLGNAVKFTDYGSIVLRARLVEESSNDVLIRFEVEDTGIGVAPENLPR 929

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +F  F        RR  G GLGL+I      L GG   + S+    +T    
Sbjct: 930 LFQVFEQGDSTTTRRYGGTGLGLAITRRLAQLMGGEAGVESTLGVGSTFWLT 981


>gi|332702191|ref|ZP_08422279.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552340|gb|EGJ49384.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 960

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 104/548 (18%), Positives = 208/548 (37%), Gaps = 39/548 (7%)

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-----------ILHN 314
           +S L     ++  +++V  +  E  +A   ++    N  L    +               
Sbjct: 287 LSALVEEERRARAMLQVARNGLEETVARRTNELAQANAALQKEIKEHRESEELFRMTFEQ 346

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
              A  +   + ++   NR F  +       L        + +     +      N    
Sbjct: 347 SPFAAVMVSLDYHILRANREFCRITGYSEQELGKL----TIKDITHPEDLPSSIANADAL 402

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRG----GTIWMFENLTVQVDLET 427
           +   F  Y+        +   +G T+ V +T       G     ++ M E++T +     
Sbjct: 403 RRGDFDRYQ----IDKRYIRKDGTTIWVRITPQIVRDVGDRPLYSLGMAEDITERKATAE 458

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +          + + +   DG  +  NP + +        L     +  +    
Sbjct: 459 ALQAKTQELDRYFTLSLDLLCIADTDGYFRRLNPEWENTLGYSLAELEGKRFLDFVHPDD 518

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                E+         ++ F +  ++  G         +E+   P  N        ++T+
Sbjct: 519 IAATVEAATSLAAQTQVSKFVNRYRTKSG-----DYRWIEWKSYPAGNL-VYAAARDITE 572

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E AL +       A++ K  F+ ++S+E+R+P++ I+G  D+L     G     Q 
Sbjct: 573 RKDLEDALRKAMSQAEAANQAKGEFLANMSHEIRTPMSGIMGLMDMLLD---GEATPAQR 629

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +++E I  S+  L+++VNDILD + V+AG + ++        L+ EV         +  +
Sbjct: 630 RHLELIRGSARTLMSIVNDILDFSKVEAGQLTIDREAFAPRTLIEEVCGRFEYMAEQKEL 689

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725
           R+    D  + +  V+D +RL QI + ++ NA+ F+ +G   V L+A   +     SV +
Sbjct: 690 RLTCAVDEAVPANLVSDPRRLSQIMTNLVGNALKFTQQGEVSVRLRADTTDKLLTLSVSD 749

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +GS IP+D    +F RF        ++  G GLGL+I +  +   GG + + S     + 
Sbjct: 750 SGSGIPKDKLTRLFQRFSQLDSSPAKKAAGTGLGLAICKGLVQALGGDIRVESELGAGSV 809

Query: 784 INCRIPSK 791
              RIP +
Sbjct: 810 FTVRIPME 817



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 31/301 (10%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
              + +    A    + K+      +F++ F+   F          IL AN  + + T  
Sbjct: 314 RRTNELAQANAALQKEIKEHRESEELFRMTFEQSPFAAVMVSLDYHILRANREFCRITGY 373

Query: 229 EGIVFQKA----IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVL 283
                 K     I     L         +     ++   +     + G     +I  +++
Sbjct: 374 SEQELGKLTIKDITHPEDLPSSIANADALRRGDFDRYQIDKRYIRKDGTTIWVRITPQIV 433

Query: 284 NSFG-----EAGIAIDVSKEITVNDQLTHTYEILHN---LT-VAIAIFDQNRYLQFHNRS 334
              G       G+A D+++     + L    + L     L+   + I D + Y +  N  
Sbjct: 434 RDVGDRPLYSLGMAEDITERKATAEALQAKTQELDRYFTLSLDLLCIADTDGYFRRLNPE 493

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
           +       LA L         L+F+      P+ +          +         + +  
Sbjct: 494 WENTLGYSLAELEGK----RFLDFVH-----PDDIAATVEAATSLAAQTQVSKFVNRYRT 544

Query: 395 PNGQTLHVIVTSNPRGGTIW-MFENLTVQVDLETKYN-------TLVKVQGETIDHLSEG 446
            +G    +   S P G  ++    ++T + DLE              + +GE + ++S  
Sbjct: 545 KSGDYRWIEWKSYPAGNLVYAAARDITERKDLEDALRKAMSQAEAANQAKGEFLANMSHE 604

Query: 447 V 447
           +
Sbjct: 605 I 605


>gi|251797083|ref|YP_003011814.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544709|gb|ACT01728.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 642

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 117/515 (22%), Positives = 208/515 (40%), Gaps = 52/515 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E    +Q      + +   + IA+   +R                  ++  NP+  ++L 
Sbjct: 2   EEVNFNQQNMFAHVFNYAPIGIALISLDRR-----------------WIDVNPAACQILG 44

Query: 358 FLRSANK--LPEQLNWKTWKENIFSVYK-------SSETHKDTWHLPNGQTLHV-----I 403
             RS      P +L + + +EN+   +K        +   +  + L +G  + V     +
Sbjct: 45  HKRSELMTLDPAELIFSSRRENLSRKFKQLLEGKIPTLNLEKRYLLKDGAIVWVSLHISL 104

Query: 404 VTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           V     G     I    ++T     E K    V+       +  + +  F   G+I   N
Sbjct: 105 VRDGSDGQPWYYIAQIVDITATKMSEQKLQESVERYTSLKKYNHDTIISFDLQGKIIGGN 164

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                L     + L  GT I ++     +        + +  I +S +D        +E+
Sbjct: 165 VMAEKLTGRLVSEL-IGTSIASVIGE-DKLARILADNEPYTEIESSINDVLHVDGSYVEV 222

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L       +I P+      + F  +   +  ++ L  + E   + +E+K+ F+  +S+E+
Sbjct: 223 L------VTIAPIIVNNRSIGFYLLIKDITEQKKLLIEKETAVRTNEVKSEFMAMMSHEI 276

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  +IG TDLL  +    L+ +Q +YV  I  S   LL ++NDILD + V++G  +L
Sbjct: 277 RTPMNGVIGMTDLLLDT---PLDEEQKEYVTIIRKSGETLLGIINDILDFSKVESGNAEL 333

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699
                 LN  + E   ++  K  E N+  KV IS G   + + D  ++ QI   ++ NA+
Sbjct: 334 TEEPFNLNTAIAETFDTLMPKAMEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAI 393

Query: 700 DFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRG 753
            F+ +GS  V +  A   G      F+VK+ G  +PED    +F  F    H    Q  G
Sbjct: 394 KFTPRGSIGVSIDKAEAEGANVRLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGG 453

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL+I    + L  G +    +  G T     I
Sbjct: 454 TGLGLAITRKLVQLMDGQIYCEPNPGGGTIFRFHI 488


>gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
 gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
          Length = 545

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 192 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 238

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 239 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 295

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 296 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 351

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ + +LL ++   +  K
Sbjct: 352 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNK 410

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 411 AGEKEISLQVNA-LKRVSVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 469

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 470 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 529

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 530 EGTTFTVVLPK 540



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 167 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 224

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 225 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 270

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 271 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 323


>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1255

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 113/660 (17%), Positives = 228/660 (34%), Gaps = 60/660 (9%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           L L  +    A+  L  ++    ++   +L           DQ G I W + ++ + T  
Sbjct: 181 LQLAAVARREADLQLARQR-DEQLAQVAMLASRTGRSTVITDQNGRIEWVHPAFAEITGH 239

Query: 229 EGIVFQK-------AIGESRKLFKEEIKKRMISSSALEKNFCETVSTL--EHGNNKSYKI 279
             +  Q        A   +R     +++     S A    F         E G     ++
Sbjct: 240 LPLEVQGRPLWEALARDLTRSDAAAQLRTLFAGSGAFRHEFVARRGQACAEPGQPYWLEV 299

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNR-YL 328
                            +  D+S             E+L     NL +++ + D  R  +
Sbjct: 300 DAAQVIDETTGRLQFVCLCSDISSRKAHESGNDEQRELLAALTENLPISLLVLDAQRMQV 359

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NR     + +        P N  L + L +          +  +  +  V +     
Sbjct: 360 LSLNRHAQIEFGVSPT-----PGNSGLDDMLGAGL-------HERIRAELDEVLQRPGAV 407

Query: 389 KDTWHLPNGQTLHVIVTSN--------PRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
           +  +  P  +   VI   +        P    I    ++T Q   E +         E +
Sbjct: 408 EHEFVWPTVEGRRVISARHVAVQDRHGPPRVVITQLRDVTRQRRDELRLRESETRYRELV 467

Query: 441 DHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN--IAATCSRYYNESDGW 497
           + + EGV +  P   +     P    +   +         +    +    +R   +    
Sbjct: 468 ETIDEGVFISNPARDQWYYIGPRMYQMLGLKVADRREHPDLLQSLVLPDDARLLAQQREH 527

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           +            R   +G L  L        ++P    +      +VTD       L  
Sbjct: 528 EEALEATDVTLRIRHPGRG-LRWLRQRT-RTRVLPGGETRVYGLLDDVTDERERALQLQA 585

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             +    A + K+ F+  +S+E+R+P+  I+G T+LL  ++   L+ +Q ++ + +  S 
Sbjct: 586 ARDVAEAASQAKSQFMASMSHEIRTPMNGILGMTELLLGTR---LDDRQRRFAQAVYRSG 642

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL ++ND+LD + ++AG ++L  +   L  L+ +    +A + HE  + +     G +
Sbjct: 643 ENLLEIINDVLDFSKIEAGRLELAPTDFNLRTLIEDTLDLLAPRAHEKGLELSFRETGDV 702

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDNGDFIFSVKNNGSS 729
            +  +AD  RL Q+ + +++NA+ F+  G  V +                 F V++ G  
Sbjct: 703 PANVLADPLRLRQVLTNLVANAVKFTEHGE-VTVDLRFLPRPRAGAPAMLEFRVRDTGIG 761

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  ++   +F  F         +  G GLGL+I    + L GG + + S     +     
Sbjct: 762 MAAELLPRLFTAFTQAHGGMARRYGGTGLGLAISRQLVELMGGQIDVVSQPGVGSEFRFT 821


>gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1062

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 141/825 (17%), Positives = 307/825 (37%), Gaps = 99/825 (12%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
              A+  +E  +   E+ + L +Y +L    +   +V D          +  +R      
Sbjct: 108 GRKAQLEDEVKTRTRELNETLERYQALFASVSDPILVADRNTGILVECNEAAERFFGRSR 167

Query: 109 DTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI-EGRVSGSCAFLR 167
           +  +   ++ L   H   ++  TE  +++            +  +   +G V  +    R
Sbjct: 168 EQLIGRPQSVLHPPHTRLVNGVTEDFKRKAT----DPRGLEEIKLLASDGEVRDAEVTAR 223

Query: 168 ILSLD------GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           +  +       G++ ++ E       L      ++ + D+    +   D+ G I++ N  
Sbjct: 224 VFDIGENKLILGVFRDITERKRAEDALRESEQRYRRIVDTAQEGIRISDECGRIVYLNQ- 282

Query: 222 YKKNTETEGIVFQKAIGESRK--LFKEEI---KKRMISSSALEKNFCETVSTLEHGNNKS 276
             + ++  G    + +G + +  LF E++   ++RM           E       G    
Sbjct: 283 --RMSDLLGYSQDQMLGRNIEDFLFPEDLEDHRQRMEDRRRGSDACYEKRLRRSDGTAVW 340

Query: 277 YKIVRVLNSF------GEAGIAIDVS----KEITVNDQLTHTYEILHNL------TVAIA 320
             +             G   +  D++     E  ++ +     ++L  +      T ++ 
Sbjct: 341 TLVSVKSLPDATGRYDGSLAMFSDITDRKLAEEALHQEDARLRKLLEIIQYDTANTQSLL 400

Query: 321 IFDQNRYLQFHNRSFVELWEIDLA---FLATNPSNDELLE-FLRSANKLPEQLNWKTWKE 376
            F   + L+     F  ++  D     F   + S D +    + +     E      W E
Sbjct: 401 DFALGKCLELTGSRFGYIYHYDEDSQSFTLNSWSRDVMQACSIANPQSCYELSKTGLWGE 460

Query: 377 NIFSV-------YKSSETHKDTWH--------------LPNGQTLHVIVTSN-------P 408
            +          + +    K  +               L N + + V+  +N        
Sbjct: 461 AVRQCRAVIVNDFLTDNPLKKGYPEGHAQLTNFLTVPILSNKRIVAVVGVANKQTDYMDS 520

Query: 409 RGGTIWMFENLT----VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
               + +  + T     +   E       +     +   ++G+  +         +P + 
Sbjct: 521 DVIQLSLLMDATWRVVERRQAEESLRKSDERLSLALMAANDGMWDWDISSGTTYFSPRYY 580

Query: 465 SLWKTE----------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           ++   +             L     + +     S   N S+G+++       F    KS 
Sbjct: 581 TMLGYQPGEFPSDFDTWKSLLHPDDVEHAIHIVSESLNNSEGFEI------DFRMRTKSG 634

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             +  L    V+E +       + + T V++ +  R++  L         A++ K+ F+ 
Sbjct: 635 DWSWILGRGRVVE-TDAEGHAKRMVGTHVDINERKRSQADLLSAKLQAEAANKAKSEFLA 693

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I+G   LL+T++    N +Q++Y+   + S+  L  L++DILD++ ++
Sbjct: 694 NMSHEIRTPLNGILGMLQLLQTTE---PNEEQNEYLTGATRSTKRLTRLLSDILDISRIE 750

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSK 693
           AG M +  +   +  L + +++   T+     + +  I D +L +  + D  RL QI   
Sbjct: 751 AGRMDVVETEFDIYQLQDSIREIFYTEAQGKGLVLDFIWDDELPTVLIGDEARLRQILFN 810

Query: 694 ILSNAMDFSSKGST-VILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           ++ NA+ F+ KG   V +    ++       +F+V + G  I E+  K +F  FV     
Sbjct: 811 LVGNAIKFTDKGEVLVEVSLLPNSNFSSVRVLFTVSDTGIGICEEHLKYIFEPFVQAEIS 870

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +R  G GLGLSIV   +++ GG +SI S+    TT+   +P K
Sbjct: 871 YTKRFQGAGLGLSIVRRLVSILGGDISIDSALGEGTTVYLSLPLK 915


>gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1200

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 113/595 (18%), Positives = 224/595 (37%), Gaps = 34/595 (5%)

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           W   +     + N + +  T  EG   +            E   +++S    E+N   T 
Sbjct: 341 WQTRR----SFVNPASRLLTHLEGCSQEPRKPPETITLGWEPWFQLVSR-IFEENQQYTR 395

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
              E  N +  K+V       +               +      +  ++  AI   D+  
Sbjct: 396 HLAEQ-NRRLDKLVARRTERLK-------ETTERREREYALLRSLFDSIPEAIVFKDKEG 447

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
                N+S   +     + +    S     +     +   +  + +   E     Y+   
Sbjct: 448 KYLGCNKSAERMLGYTESEMIGQESIRLTTD---EQSVRIKAEDERVLSERTPLRYQEKV 504

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                  L +   L          G I ++ ++T + +   +     +     +D + +G
Sbjct: 505 ELAGKPVLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDG 564

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIIT 505
           +  +  D    + NPA+ S+   + N        + ++     R   E       +  I 
Sbjct: 565 LWDWYLDSEQIICNPAYYSMLGYKSNEFPALVSTLDDLIHPDDRIRVEEYRDQYLSDPIG 624

Query: 506 SFDDER----KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           ++D E     KS      L    V+E+++   P  + + T  ++T     E A+ E  + 
Sbjct: 625 AYDIEFRMRGKSGHYHWVLSRGRVVEFTVDNQP-KRMVGTHKDITRHKSNEVAMLEAKQD 683

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K+ F+ ++S+E+R+P+  IIG   L + +   SL  +Q  Y++    S+  LL
Sbjct: 684 AESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRT---SLTPQQEDYLDKAGFSAQSLL 740

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG ++L      L+ +L+      A K  +  + + + +    G  +
Sbjct: 741 RIINDILDFSKIEAGKLELERVGFPLDKVLDHALDLNALKAQQKGVELLLYAPVTAGLIL 800

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMC 735
             D  RL Q+   +LSNA+ F+  G  + L               F V++ G  I ++  
Sbjct: 801 EGDPLRLGQVLINMLSNAVKFTQSGE-IELGCEDVGERDHRITLKFWVRDTGIGISKEQQ 859

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            S+F+ F        R   G GLGLSI +  +++ GG + + S     +T +  I
Sbjct: 860 ASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSEMGVGSTFSFTI 914



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 95/289 (32%), Gaps = 20/289 (6%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  L    +E        ++     ++ + LFDS+   +  +D+ G  L  N S ++  
Sbjct: 403 RLDKLVARRTE--RLKETTERREREYALLRSLFDSIPEAIVFKDKEGKYLGCNKSAERML 460

Query: 227 ET--EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL- 283
                 ++ Q++I  +       IK       +              G       +++  
Sbjct: 461 GYTESEMIGQESIRLTTDEQSVRIKAEDERVLSERTPLRYQEKVELAGKPVLLDTLKLPF 520

Query: 284 -----NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFHNRS 334
                   G   +  DV++E    +QL  + E  H    A+   ++D   +      N +
Sbjct: 521 YNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPA 580

Query: 335 FVELWEI-DLAFLATNPSNDELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           +  +       F A   + D+L+   + +R      + L+      +I    +    H  
Sbjct: 581 YYSMLGYKSNEFPALVSTLDDLIHPDDRIRVEEYRDQYLSDPIGAYDIEFRMRGKSGHYH 640

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            W L  G+ +   V + P+   +   +++T     E       +     
Sbjct: 641 -WVLSRGRVVEFTVDNQPK-RMVGTHKDITRHKSNEVAMLEAKQDAESA 687


>gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 1314

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 170/387 (43%), Gaps = 19/387 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + +  +        T  +      ++  EG+    P G    +NP    ++   E     
Sbjct: 447 QEIIAREQAIAAARTAEEKFRSIFENAVEGIFQTTPSGEYLSANPKLARIYGF-ETVADM 505

Query: 477 GTHIRNIAATC-SRYYNESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            T +++I+          ++   L     ++  F+ +     G++  +S++      I  
Sbjct: 506 QTGLQDISRQLYVDPARRAEFCSLLEQTDVVIGFESQVYRADGSIIWISENA---RAIRD 562

Query: 534 PNAQTMLTFVNVTD--SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              Q       V +    +    L  + EA   A + K++F+ ++S+E+R+PL  +IG  
Sbjct: 563 EQGQVKYYEGTVEEITQRKLNADLKAEKEAAVAASQAKSAFLANMSHEIRTPLNGVIGML 622

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL T+   +L+ +Q++YV    +S+  LL L+ND+LD + ++AG ++L      L+ LL
Sbjct: 623 ELLGTT---TLDERQNRYVHIARSSAGTLLGLINDVLDFSKIEAGKLELERVQFDLHSLL 679

Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            +V +  + + +E  + +   I  G   +   D +R+ Q+   +++NA+ F+ +G  ++ 
Sbjct: 680 EDVAEMFSHRANEKGLELSCRILPGVPTNVYGDPERIRQVLINLVNNAIKFTKQGEVILR 739

Query: 711 KAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
              + +         SV + G  IP D    +F  F        R   G GLGL+I    
Sbjct: 740 AEQQVHSSGVSRMRISVIDTGIGIPADRSSQLFAPFTQVDASTTRKYGGTGLGLAICRQL 799

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I L GG V + S +   +T  C +P +
Sbjct: 800 IELMGGRVGVDSVEGNGSTFWCEVPLE 826


>gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
 gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
          Length = 545

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 192 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 238

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 239 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 295

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 296 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 351

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ + +LL ++   +  K
Sbjct: 352 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNK 410

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 411 AGEKEISLQVNA-LKRVSVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 469

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 470 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 529

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 530 EGTTFTVVLPK 540



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 167 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 224

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 225 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 270

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 271 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 323


>gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
 gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
          Length = 1108

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 137/695 (19%), Positives = 257/695 (36%), Gaps = 98/695 (14%)

Query: 179  AETTLKCKKLSNHISVF-KVLFDSLDFLVWHRDQAGDILWANISYKKNT----ETEGIVF 233
             E   K  +   H+ +  + + D +       D  G   + + S+++      E  G   
Sbjct: 412  IEMEKKRDQYETHLHLMSRNMNDVI----LETDVEGRYTYISPSHQRILGRGKELLGKNC 467

Query: 234  QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG----NNKSYKIVRVLNSFGEA 289
             K +      F   I   ++ +          +   E G     + +   V         
Sbjct: 468  MKDLHPDDIDFVAGIFGEIVETGEQHHAEYRYLHP-EKGYIWLESVATSYVDENGQKRVL 526

Query: 290  GIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
                DV++     + L  +              I I D+N Y    N +  E+       
Sbjct: 527  INTRDVTERKETENTLIKSEAKFKSYITQAPAGIFIADENGYYVDVNPAACEMTGYSKDE 586

Query: 346  LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
            L      + L   +        +      K +I   Y + E  +  W         V   
Sbjct: 587  LLGMNLLELLPHDIHRHVIDQFEDVINKGKIDIEIPYLTKEGDRKWW--------RVTAA 638

Query: 406  SNPRGGTIWMFENLTVQV----DLETKYNTLVKVQGETID--HLSEGVA----------- 448
            + P G  I   +++T+Q     DL    N     + E  +  + +  +            
Sbjct: 639  ALPEGRVIGFVKDITIQKSTESDLSEALNRSQHREKEITELLNSTRAILEIDDFEVVARH 698

Query: 449  VFGPDGRIKLSNPAFRSL--------------WKTEENRLSPGTHI-------------- 480
            +F    R+  +   + +L                     + P   +              
Sbjct: 699  IFDACARVIGAKAGYVALLSDTGEENELLFLEDGGMPCSVDPDLPMPVRGLRNEAYETGE 758

Query: 481  ----RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--------LSDSVL-- 526
                 +  A+    Y       L   + +  + E K++ G L          + D+ L  
Sbjct: 759  VVFENDFMASEWVKYMPEGHMVLPNVLFSPLNIEGKTV-GVLGFAYKDGDFTIHDAWLAK 817

Query: 527  ---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE---ALRKADEIKNSFVQHVSYEL 580
               E++ I L N++            R E  + + NE       A++ K+ F+ ++S+EL
Sbjct: 818  TFGEHAAIALRNSRNFDVLKGTN--KRLEDTVLKANELAAQAEYANKSKSEFLANMSHEL 875

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+PL +IIGF+D+L     G L  KQ +Y   I+ S   LL L+N+ILDL+ ++AG M+ 
Sbjct: 876  RTPLNSIIGFSDILNGETFGKLTQKQEKYTANINKSGKHLLYLINEILDLSKIEAGKMEF 935

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                  LN + ++++  I+ +  + +I +++     +    AD+ ++ QI   +LSNA+ 
Sbjct: 936  VCDDFKLNSVFSDIESIISLQAQKKSIDLEISKSVDI-EINADKSKIKQIIFNLLSNAIK 994

Query: 701  FSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
            F+ +   V + A + D      +VK+ G  IPED  +++F+ F  V  +   +  G GLG
Sbjct: 995  FTDENGRVSMSARKVDRDRVEIAVKDTGIGIPEDKFETIFDPFMQVDASTSRKYGGTGLG 1054

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            L++V+ ++  HGG V + S     +T    IP K+
Sbjct: 1055 LALVKKYVEKHGGEVWVESEIGKGSTFMFTIPLKQ 1089



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 88/307 (28%), Gaps = 40/307 (13%)

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
            V +  G A   I++ K+    +   H      N+   I   D      + + S   +  
Sbjct: 400 EVSDDLGFALYKIEMEKKRDQYETHLHLMS--RNMNDVILETDVEGRYTYISPSHQRILG 457

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW---HLPNG 397
                L  N   D            P+ +++         + ++ E H   +   H   G
Sbjct: 458 RGKELLGKNCMKD----------LHPDDIDFVA--GIFGEIVETGEQHHAEYRYLHPEKG 505

Query: 398 -QTLHVIVTS----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              L  + TS    N +   +    ++T + + E             I     G+ +   
Sbjct: 506 YIWLESVATSYVDENGQKRVLINTRDVTERKETENTLIKSEAKFKSYITQAPAGIFIADE 565

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +G     NPA   +    ++                    E    D+   +I  F+D   
Sbjct: 566 NGYYVDVNPAACEMTGYSKD------------ELLGMNLLELLPHDIHRHVIDQFEDVIN 613

Query: 513 SLQGTLELL------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
             +  +E+              +   LP  + +    ++T     E  L+E     +  +
Sbjct: 614 KGKIDIEIPYLTKEGDRKWWRVTAAALPEGRVIGFVKDITIQKSTESDLSEALNRSQHRE 673

Query: 567 EIKNSFV 573
           +     +
Sbjct: 674 KEITELL 680


>gi|260642788|ref|ZP_05417328.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620539|gb|EEX43410.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 669

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 118/649 (18%), Positives = 245/649 (37%), Gaps = 44/649 (6%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKV-----------------LFDSLDFL--VWHR 209
            ++  +  +L   T + ++L   +SV +                  + +SL  +  V+  
Sbjct: 5   RTVKTMAEQLEALTKENERLKQELSVLRQEKEKANPVSFKERYAVKILNSLPDMLTVFDH 64

Query: 210 DQAGDILWANISYKKN-TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           ++ G  + +N          E  V             + I   M  + A           
Sbjct: 65  NEIGIEVVSNEETNHVGVTNEDFVGMHMRNMVPPEAYQNIHSNMQHAVATGAVSAAHHEL 124

Query: 269 LEHGNNKSYKIVRVLNSF-GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
             +G    Y+             +  D+S+ +    QL     +L  ++ +I    ++  
Sbjct: 125 DFNGKRHYYENRIFPLDEKYVLIMCRDISERVATQRQLEVFKSVLDKVSDSILAVSKDGT 184

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA--NKLPEQLNWKTWKENIFSVYKSS 385
           L + N+ F+E + +          +  +    + A   +L E  +         +  +  
Sbjct: 185 LVYANKQFIEEYGVTKELGIQKVYDLPVSMTTKEAWEKRLQEIRDNDGSFAYRAAYVRMG 244

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLS 444
           ET K    + +       +T       IW F +++T  +    +   L ++    ++++ 
Sbjct: 245 ETKKRVHQVSS------FLTHENEQELIWFFTQDITDVIKKRDELRELNQLLDGILNNIP 298

Query: 445 EGVAVFGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             + V  P    +    N AF        ++    T      +  +  + + D   L   
Sbjct: 299 VYLFVKDPADEFKYLYWNKAFAEHSGIPASKAIGHTDYEIFQSEEAEKFRKDDLELLRTH 358

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNE 560
                D +   L    E      L+ +++P+ + +   +    + T+    E+ L +   
Sbjct: 359 --QRIDIQETYLTANGEARIVQTLK-ALVPMEDREPLLIGISWDTTNLQNIEQELIKARI 415

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              ++D +K++F+ ++S+E+R+PL  I+GF+ LL          +Q  Y + I+ +S IL
Sbjct: 416 KAEQSDRLKSAFLANMSHEIRTPLNAIVGFSQLL---PTADTPEEQKLYSDIINQNSDIL 472

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+NDILDL+ ++AG ++     I L ++   +      ++ +  +     +  +    
Sbjct: 473 LQLINDILDLSKIEAGTLEYVKRPINLGEVCRTIYAVHKERI-KGGVDFIFDNGEEDLQM 531

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  R++QI +  ++NA  F+  G  +     R+  +    VK+ G  I ++    +F 
Sbjct: 532 EGDPNRIMQIITNFITNATKFTHAGE-IRFGFEREGENVRVYVKDTGIGIEKEKVGHIFE 590

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RFV      Q  G GLGLSI    I   GG + ++S     +T    IP
Sbjct: 591 RFVKLNSFVQ--GTGLGLSICRMIIEKIGGEIGVTSEFGKGSTFYFIIP 637


>gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1172

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 116/519 (22%), Positives = 218/519 (42%), Gaps = 47/519 (9%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           + ++    + I  ++   + + D  R ++  N + V+ + +D   +   P      E  R
Sbjct: 162 LTNEKNKFHTIFQSMAEPVIVVDAKRRIREINNAAVKCFNLDYKNVIGKPCY----EIFR 217

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-----LPNGQTLHVIVTSNPRGGTIWM 415
             ++L E    +  +E   S Y + E   D  +     L +G  L  I  S    G + +
Sbjct: 218 CCHELDECPLKRAMRE--ASQYDNLEISIDINNHLRKFLVSGSFLEDI--SGKFAGGVEL 273

Query: 416 FENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           F ++T   + E K        +         I  + EGV       RI   N  F +   
Sbjct: 274 FIDVTESRENELKLLKARNDADLEAAKLRAMISGMGEGVVFADAGDRIIEVNDFFLNYIA 333

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-ELLSDSVLE 527
                   G  I +        ++  D       +I SF  +  S   ++   + +  + 
Sbjct: 334 GCSRSELLGKSIWD--------FHAGDLLGEVRNLINSFKTKSYSSHVSVTRRIRELEMI 385

Query: 528 YSIIPLPN----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             + P+ +       +L  ++VT+  RA        E    A+  K+ F+  +S+E+R+P
Sbjct: 386 MRVQPIYSNGLYQGVLLNAIDVTELSRARIEAERAKEQAESANRAKSDFLAVMSHEIRTP 445

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+GF ++L      +L+S+Q + V+ IS     LL+L+N+ILDL+ +++G M L  +
Sbjct: 446 MNGILGFAEILLNQ---ALSSEQKESVQAISLCGEQLLDLINEILDLSKIESGKMVLEET 502

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L +++ +V  ++  K  +  + I+V   D     F+ D  R+ QI S +L NA+ F+
Sbjct: 503 DFSLENIIKDVITTVRQKAQDKGLEIRVNFLDDIPQRFIGDSIRIRQILSNLLFNAVKFT 562

Query: 703 SKGSTVILKAARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRR 752
            +GS +I  + R                V + G  I +D  + +F+ F         +  
Sbjct: 563 MQGSVIISVSKRQEECHERDDIFPLQIEVADTGIGISQDKRELIFDAFTQAEGVIAQKFG 622

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I  S ++L GG + ++S+    T     +P K
Sbjct: 623 GSGLGLTICRSLLDLMGGEIWVNSNKPQGTIFTFCLPVK 661


>gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1033

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 112/657 (17%), Positives = 246/657 (37%), Gaps = 59/657 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV----WHRDQAG-----DILW 217
           R+  +     ++ +       L+     F++L ++    +       D+ G       L 
Sbjct: 116 RVKYVVCSADDITDQRRLQDSLAESEDKFRLLAENAPMGIALHELVLDKHGNPVDYRYLD 175

Query: 218 ANISYKK-----NTETEGIVFQKAIGESRKL--FKEEIKKRMISSSALEKNFCETVSTLE 270
            N  +++      ++  G    +  G  +         +  +   S   +   E++    
Sbjct: 176 VNQGFERHTGLKASQVTGRTAGQVFGRQQDPPFLDTYARVVLGGRSVSFEEEVESLGRSF 235

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
             N     + R    F +       ++E  V    +H   I  N   A+  FD +  +  
Sbjct: 236 LINAYKVGLNRFATVFMDVSQRRQATREAEVRR--SHFESIFENTKDAMVFFDTSHLIFN 293

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N  F  ++           + +E+     +    PE+L       ++      +   + 
Sbjct: 294 INSRFTAMFGY---------TLEEIRGKQVNRVVDPERLADDYISSSVLEG--ENVEKET 342

Query: 391 TWHLPNGQTLHVIVTSNP------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
             +  +GQ L V++   P        G   ++ +++ +   E +     ++    I+ + 
Sbjct: 343 VRYCRDGQPLDVLIKGGPVYVAGEIVGGYSIYSDISGRKQAERELTKQNQLLEGIINGIP 402

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           + +A+  PD  IK  N A          +++       I         E +      A+ 
Sbjct: 403 DILAIQYPDHSIKRYNQAGYQALNKSPEQVAGRKCFELIGRD-----RECEVCATREALN 457

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKN 559
           T    + +     L    D  ++    P+ N Q      +    ++T   + E  L    
Sbjct: 458 TGTLQQVEKYVPEL----DVYMDCRSNPIFNEQGEILYIIEQLRDITQRKKDEIELIVAK 513

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A + K+ F+ ++S+E+R+P+  I+G  +++      + + +  + ++    S+  
Sbjct: 514 EQAEAASKAKSEFLANMSHEIRTPMAGIMGALEMVSAR---TDDEESRRLMKMTLESARS 570

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           L  ++NDILDL+ V+AG +++ +       L   V    + +  E NI +++ +   +  
Sbjct: 571 LQQIINDILDLSKVEAGKLEIEHQEFDPQSLFKRVMDLYSIQAGEKNIELQLDTAPGIPR 630

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDM 734
               D+ RL Q+   ++SNA+ F+S+G  ++    ++AA       F V++ G  I ED 
Sbjct: 631 RLCGDQYRLEQVLRNLVSNAVKFTSQGRVILRVRPVQAASGKARLNFEVEDTGVGIKEDF 690

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+ F         + +G GLGL+I    + + GG +   S     +  +  +P
Sbjct: 691 LPRLFDSFTQADSTYGKKHQGTGLGLAISNRLVQMMGGDIQAQSIPGAGSIFSFSLP 747



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 121/403 (30%), Gaps = 41/403 (10%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
             +L    +  ++L D++   VW+          N ++      +      A      LF
Sbjct: 8   EDELRRSEASQRILLDNIATQVWYLVNEYTYGAVNKAHADFLGMQVQEVSYA--SLYDLF 65

Query: 245 KEEIKKRMISSSALEKNFCETVSTLE-----HGNNKSYKIVRVLNSF------GEAGIAI 293
             ++ +     +       E++ T E      G  +   I +                A 
Sbjct: 66  PVDVVEVCRPGNREVFETGESLQTEEWVPDASGELRLLSIKKSPGLDRDGRVKYVVCSAD 125

Query: 294 DVSKEITVNDQLTHTYEIL----HNLTVAIA----IFDQNR-----YLQFHNRSFVELWE 340
           D++ +  + D L  + +       N  + IA    + D++           N+ F     
Sbjct: 126 DITDQRRLQDSLAESEDKFRLLAENAPMGIALHELVLDKHGNPVDYRYLDVNQGFERHTG 185

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +  + +    +               +   +      +    +S    ++   L  G++ 
Sbjct: 186 LKASQVTGRTAGQVFGRQ--------QDPPFLDTYARVVLGGRSVSFEEEVESL--GRSF 235

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +            +F +++ +     +            ++  + +  F     I   N
Sbjct: 236 LINAYKVGLNRFATVFMDVSQRRQATREAEVRRSHFESIFENTKDAMVFFDTSHLIFNIN 295

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG-TLE 519
             F +++      +  G  +  +     R  ++     +        +  R    G  L+
Sbjct: 296 SRFTAMFGYTLEEIR-GKQVNRVVDP-ERLADDYISSSVLEGENVEKETVRYCRDGQPLD 353

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +L      Y    +    ++ +  +++   +AER LT++N+ L
Sbjct: 354 VLIKGGPVYVAGEIVGGYSIYS--DISGRKQAERELTKQNQLL 394



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 90/272 (33%), Gaps = 40/272 (14%)

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           S  +L+ +D+  +   P N E+ E         E L  + W  +     +     K    
Sbjct: 60  SLYDLFPVDVVEVC-RPGNREVFE-------TGESLQTEEWVPDASGELRLLSIKKSPGL 111

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA----V 449
             +G+  +V+ ++          +++T Q  L+              ++   G+A    V
Sbjct: 112 DRDGRVKYVVCSA----------DDITDQRRLQDSLAESEDKFRLLAENAPMGIALHELV 161

Query: 450 FGPDG-----RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
               G     R    N  F      + ++++  T  +         + ++    +     
Sbjct: 162 LDKHGNPVDYRYLDVNQGFERHTGLKASQVTGRTAGQVFGRQQDPPFLDTYARVVLGGRS 221

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALR 563
            SF++E +SL              +   +   +    F++V+   +A R    +      
Sbjct: 222 VSFEEEVESL--------GRSFLINAYKVGLNRFATVFMDVSQRRQATREAEVRRSHFES 273

Query: 564 KADEIKNSFV-QHVSY---ELRSPLTNIIGFT 591
             +  K++ V    S+    + S  T + G+T
Sbjct: 274 IFENTKDAMVFFDTSHLIFNINSRFTAMFGYT 305


>gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 887

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 104/501 (20%), Positives = 200/501 (39%), Gaps = 23/501 (4%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E  + ++      +      A+ I D  + L  +N+   E++     F    P N  L+
Sbjct: 77  AEEDLREKDQMYRALFEMSNDAVIISDGKKVLDINNKG-CEIFG----FREERPLNVSLI 131

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
            F+        Q   K   +   S ++      +   +    +L +I  +N     +   
Sbjct: 132 SFIPPEYLSELQQALKETFKQASSCFEMRYQKAEGEIVDIEVSLSLIDRNNNIIHIVA-- 189

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLS 475
           +++T   + E       +     +D+    + +     R I  +NP         E  L 
Sbjct: 190 QDITGVKNAERLEQENRERFKTVLDNTLCSILLIEASSRKIVDANPVALKTTGYSEKELI 249

Query: 476 PGTHIRNIAATCSRYYNESDGW---DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                R I        N        +L  +I+     ++ S+   +  +S          
Sbjct: 250 GMVCSRLICQAGEERCNVPSLDPAGELSESILFKAGGDKISILRNVVPVSIG-------- 301

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N   + +F+++++  + E  L +   A   A+   + F+  +S+ELR+PLT IIGF++
Sbjct: 302 -GNGYFVESFIDLSERKKVEEELLQAKLAAEGANRAMSEFLATMSHELRTPLTAIIGFSE 360

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+     G  +    +++ +IS S   LL+L+N ++DL+ ++AG M L      L D+  
Sbjct: 361 LMLGEATGEFDELNRKFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLEPDFFSLYDIFA 420

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           + K   +    + NI +    +       ADR R  QI   ++SNA+ F+  G +V +  
Sbjct: 421 DTKSISSPLALKKNISMDFNVESDF-LIYADRTRFKQIMYNLVSNAIKFTPAGGSVEVVG 479

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGG 770
            R       +V + G  I +D  K +F  F     A   +    GLGL + ++F+ +HGG
Sbjct: 480 RRSENRIRVTVSDTGIGISQDEIKHLFKPFKQINFALSREYESTGLGLVLSKNFVEMHGG 539

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + S     +T    +P +
Sbjct: 540 RIWVESEPGKGSTFTFEVPVE 560


>gi|296271900|ref|YP_003654531.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096075|gb|ADG92025.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
          Length = 1420

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 97/516 (18%), Positives = 203/516 (39%), Gaps = 35/516 (6%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAF 345
             G + D++++           ++L   + AI I D+   L   ++SF +      +  +
Sbjct: 445 SVGTSYDITEQYLSE---KKYKDLLDYASDAIHILDKEGNLIEFSQSFAQSLGYTNEEMW 501

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                  D  +  +   N++ E +++ +             + +      +G  + V + 
Sbjct: 502 ELNIVDWDIFILEVEVKNRIKELIDFPS-------------SFEAKHKRKDGSIIDVQIN 548

Query: 406 S-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           +     N          ++T Q  LE +  +        ID+ +  +AV    GR+   N
Sbjct: 549 AKGIEINGEEYLYASQRDITKQKKLEKEILSEKDFISTIIDNANAIIAVIDSMGRMIKIN 608

Query: 461 PAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
              +      E  ++   +   R +     +   E         I+ +F +   S  G  
Sbjct: 609 KYAQDFVGYAEEEIASEPYFWSRFLPKDKKQKVLEIVKKANKGEIVKNFKNSWISKDGEE 668

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           ++   S +                ++VT++      L    +   KA+ +K+ F+ ++S+
Sbjct: 669 KVFEWSNMLVQKDDGSMNYIATIGIDVTENHELLEELKGAKKNAEKANVVKSEFLANMSH 728

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P++ + G   L+    L  L   Q  Y+     SS  LL+++NDILD + ++AG +
Sbjct: 729 EIRTPISGVTGLISLILDMPLEPL---QRDYLNKAKKSSNALLSIINDILDYSKIEAGKL 785

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
            +      L ++   +      + ++  +    + DG + S  + D  RL QI + ++ N
Sbjct: 786 DIIEQDFSLEEIFKNISNLFGYETYKKQLEFTFVLDGNIPSLIIGDSLRLTQILNNLVGN 845

Query: 698 AMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           A+ F+  G   +  +    N D +   F +++ G  I ++  K +FN F       +R+ 
Sbjct: 846 AIKFTENGYVALKSEIKEINEDVVVLRFCIEDTGIGISKEGQKKLFNTFEQLDTSNKRKY 905

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            G GLGLSI +  I L  G + + S +   +     
Sbjct: 906 SGSGLGLSITKQLIELMHGKIWLESEEGKGSKFYFE 941


>gi|322420797|ref|YP_004200020.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127184|gb|ADW14744.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 933

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 99/539 (18%), Positives = 204/539 (37%), Gaps = 37/539 (6%)

Query: 271 HGNNKSYKIVRVLNSFGEAGIAI-----DVSKEITVNDQL---THTYEILHNLTVAIAIF 322
            G     ++  V  +     + +     D+++       L        ++ NL   I + 
Sbjct: 155 GGERVLLEVGEVFRNDSGTPLRVVSVVHDITERKEAESALFFEKRYRGLIENLPQRIFLK 214

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D N      N SF     ++   +      D            P     +   E + +  
Sbjct: 215 DCNLVYLSCNSSFARELGLEPGDVFGKTDYDLFAP--------PLAKKRQEEDEKVMAAG 266

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVKVQG 437
            + E  +D     +G  +   +             + +  ++T +   E +     +   
Sbjct: 267 TAVE--RDEQRERDGAWVSKALIPLKDDNGWVYALLGVLTDITFRKKAEEQLKESEERFR 324

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            T +  + G+        +   N  F  +    +  L  G+ +        R   +    
Sbjct: 325 NTFEQAAVGICHIALSDILIRINRRFCDILGYTQEELL-GSTLEQTIHPEDRAAEQGQLS 383

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            L    I ++  E + ++    L+  + L  S++     +       + D      AL  
Sbjct: 384 RLVNREIDNYSIEIRQIRKDGSLVWVN-LTKSLVCGRKGEPKYLVGVIEDVTAKREALEL 442

Query: 558 KNEA--LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           + E   ++ A   K+ F+ ++ +E+R+P+  ++G + L   S+   L  KQ  Y+E I +
Sbjct: 443 RRERDLVQAASRAKSEFLANMGHEIRTPMNAVMGLSRLALKSE---LVPKQRGYLEKICS 499

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S  LLN++NDILD + ++AG ++L  + + L+++L  +      K  E  +  K+    
Sbjct: 500 ASRTLLNIINDILDFSKIEAGKVELEKTELSLHEVLGNISDMHHLKAQEKGLDFKMRLAP 559

Query: 676 KLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI 730
           +L    + D  RL Q+ + ++ NA+ F+ +G  V+     + G+      F V++ G  I
Sbjct: 560 ELPRKLLGDPLRLTQVLNNLIGNALKFTRRGEVVVAVKPVEQGEGMVAVNFCVQDTGIGI 619

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +  + +F  F        R   G GLGLSI    + L GG + + S  E  ++ +  
Sbjct: 620 TPEQMEKIFTPFTQADSSTTRQYGGTGLGLSISRQLVELMGGELQVQSVPEKGSSFSFT 678



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/428 (13%), Positives = 132/428 (30%), Gaps = 50/428 (11%)

Query: 52  AKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIP--QTD 109
            ++ +E     SE   ++S+  + +   +     WD      +   +L +   IP     
Sbjct: 58  WRRQSEGALRRSEEQLRISQRIAHIGSWD-----WDLASGRLDCSEELCRIFAIPFDGAP 112

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE----TQNDCAIKIEGRVSGSCAF 165
               +F + L       ++ A E       SF +          +  +   G V  + + 
Sbjct: 113 CSYDAFLSLLPEREREAVAAAVESALTGDDSFAVEYTLLCPGGGERVLLEVGEVFRNDSG 172

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
             +  +  ++ ++ E       L      ++ L ++L   ++ +D     L  N S+ + 
Sbjct: 173 TPLRVVSVVH-DITERKEAESALFFE-KRYRGLIENLPQRIFLKDCNLVYLSCNSSFARE 230

Query: 226 TETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
               G+      G++   LF   + K+              V   E        + + L 
Sbjct: 231 L---GLEPGDVFGKTDYDLFAPPLAKKRQEEDEKVMAAGTAVERDEQRERDGAWVSKALI 287

Query: 285 S--------FGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
                    +   G+  D++     E  + +             V I     +  L   N
Sbjct: 288 PLKDDNGWVYALLGVLTDITFRKKAEEQLKESEERFRNTFEQAAVGICHIALSDILIRIN 347

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           R F ++       L        L + +   ++  EQ             Y S E  +   
Sbjct: 348 RRFCDILGYTQEELLG----STLEQTIHPEDRAAEQGQLSRLVNREIDNY-SIEIRQ--- 399

Query: 393 HLPNGQTLHVIVTSNPRGG-------TIWMFENLTVQVD-LETKY-----NTLVKVQGET 439
              +G  + V +T +   G        + + E++T + + LE +          + + E 
Sbjct: 400 IRKDGSLVWVNLTKSLVCGRKGEPKYLVGVIEDVTAKREALELRRERDLVQAASRAKSEF 459

Query: 440 IDHLSEGV 447
           + ++   +
Sbjct: 460 LANMGHEI 467


>gi|270294120|ref|ZP_06200322.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
 gi|270275587|gb|EFA21447.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
          Length = 914

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 111/520 (21%), Positives = 214/520 (41%), Gaps = 43/520 (8%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N T  I    ++  L F NR F E   I      T 
Sbjct: 251 GYIQNITDIQKRRNDINLLTHAINNSTEDIYSAHEDGTLIFCNRCFKERHGIGNGQDLTR 310

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----------NGQT 399
               +L  + R            +WKE    V +    H    + P           G  
Sbjct: 311 MKIYDLPSYGRDET---------SWKEFANRVKRGETNHGYIVYHPLPKRPEVLAIEGNA 361

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
             V  TS+   GTIW F  +++ ++  E +     ++  + I++L  G+ V         
Sbjct: 362 YWV--TSDKGEGTIWTFGRDVSTRIRHEQQIKQFNQILDKIIENLPAGIVVKD------- 412

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N  F+ L++  E+          +      +Y      +  A  I      +K      
Sbjct: 413 INNNFKYLYRNRESYNREIPIQEALGKDDFDFYPLETAQEKRAQDIEIARTGKKMHWIAE 472

Query: 519 ELLSDS---VLEYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           E   +     L+   + + +       +    ++T+  + +R L    E    +D +K++
Sbjct: 473 ERDGNGNPIYLDKRKMKIESNDFSPILLNIEWDITEMEQMKRELLVAKEKAETSDRLKSA 532

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PL  I+GF+ ++  S   +   ++  Y E + +++  LL L+N+ILDL+
Sbjct: 533 FLANMSHEIRTPLNAIVGFSRIIAES---TDEEERLGYYEIVESNNERLLQLINEILDLS 589

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +++GI++   + + L+ L  E+  +   +  E  + +      +      D+ R+ Q+ 
Sbjct: 590 KIESGIVEFTITPVRLHPLCKEIHDAHIFRCPE-GVELIYEPSDENIVIDGDKNRIFQVI 648

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           S ++ NA  F++ G  +     R+     F V + G  I  D    VF RFV   +  Q 
Sbjct: 649 SNLIGNAFKFTTTGH-ISYGYRREGKYVAFHVTDTGMGIAPDKVDRVFERFVKVNNFAQ- 706

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGLSI ++ I   GG++S++S     TT    +P +
Sbjct: 707 -GTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLPLE 745



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 114/369 (30%), Gaps = 54/369 (14%)

Query: 109 DTDLLSFENWLKFHHYIKLSKATE-KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR 167
             D  SF  W+K +   K+  + + ++  +G  F +  +       + +G V+       
Sbjct: 197 PEDRKSFTGWMKENLKGKMENSVDYRIFLKGNIFYIRLKAFA-RERQKDGNVT------- 248

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
              ++G    + +   +     N I++     ++    ++   + G +++ N  +K+   
Sbjct: 249 ---IEGYIQNITDIQKR----RNDINLLTHAINNSTEDIYSAHEDGTLIFCNRCFKERHG 301

Query: 228 TEG------IVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKS 276
                    +         R     +     +        +           +      +
Sbjct: 302 IGNGQDLTRMKIYDLPSYGRDETSWKEFANRVKRGETNHGYIVYHPLPKRPEVLAIEGNA 361

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHN 332
           Y +              DVS  I    Q+    +IL     NL   I + D        N
Sbjct: 362 YWVTSDKGEGTIWTFGRDVSTRIRHEQQIKQFNQILDKIIENLPAGIVVKD-------IN 414

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            +F  L+    ++    P  + L +     +  P +   +   ++I       + H    
Sbjct: 415 NNFKYLYRNRESYNREIPIQEALGK--DDFDFYPLETAQEKRAQDIEIARTGKKMHWIAE 472

Query: 393 HL-PNGQTLHVI-----VTSNPRGGTIWMFE-NLTVQVDLETKY-------NTLVKVQGE 438
               NG  +++      + SN     +   E ++T    ++ +         T  +++  
Sbjct: 473 ERDGNGNPIYLDKRKMKIESNDFSPILLNIEWDITEMEQMKRELLVAKEKAETSDRLKSA 532

Query: 439 TIDHLSEGV 447
            + ++S  +
Sbjct: 533 FLANMSHEI 541


>gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 676

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 114/519 (21%), Positives = 227/519 (43%), Gaps = 44/519 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------ 349
           S  +   + L +   IL  +   + I D++  +   +R+F   + ++      +      
Sbjct: 34  SDVLLTEEALNYAQSILETIREPLLILDKDMKVISASRNFYNTFSVNPDETIGSVLYDLG 93

Query: 350 ------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                 P   ELLE +     +P + N+       + V    ++      L N +   + 
Sbjct: 94  NKQWDIPKLRELLETI-----IPRETNFGN-----YEVEHVFDSIGRRVMLLNAR--QIQ 141

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPA 462
            TS+     +   E++T +  LE       +      +  ++G+ +    +G I  +NPA
Sbjct: 142 RTSDKDPIILLAIEDITERKRLEDLLADSEERYRRLFETANDGIVLLEKREGTITHANPA 201

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           F  ++      +  G H+ +I         +     L    + ++DD        L++ +
Sbjct: 202 FEKMFGYNVKEIL-GKHLEDIGIFLENSDFQIIMQKLRDTGVINYDDVSIKTNFNLDIDT 260

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELR 581
           D  L      +  A  +   +      +   ++L    +    A+  K+ F+ ++S+E+R
Sbjct: 261 DIYL------VDRASLVQCNIRDMTQNKINLKSLIRATKQAEIANIAKSEFLANMSHEIR 314

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+G   LL  + +G   + Q++Y+E    S   L  L++DILDL+ ++AG+M+++
Sbjct: 315 TPLNGIMGMIQLLDGTPVG---ADQNKYIELALTSCNRLTRLLSDILDLSRIEAGMMEIH 371

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMD 700
            S     DL N +    A +     + +K I D  +    + D  R+LQI   ++ N + 
Sbjct: 372 ESKFRFADLRNSILGLFAVESLTKAVTLKCIIDPTIHPEVIGDEGRVLQILFNLVGNGLK 431

Query: 701 FSSKGSTVI----LKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRG 753
           F+ +GS  +    L + ++N    +F+V + G  I ED  K++F  FV    ++  + +G
Sbjct: 432 FTKEGSVTVEITPLGSEKNNDYRVLFTVSDTGIGIHEDHLKNLFKPFVQIEKSYTRKYQG 491

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGLSIV+  ++L GG + + S     T++N  +P K+
Sbjct: 492 AGLGLSIVKKLVHLMGGSIEVDSVVGEGTSMNVVLPFKQ 530


>gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 738

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 96/414 (23%), Positives = 180/414 (43%), Gaps = 27/414 (6%)

Query: 394 LPNGQTLHVIVT----SNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           LP+G+   +        NP+G       +  +++ +   +       +     ++   + 
Sbjct: 81  LPDGKVRWINTQGTTIPNPQGHGQPMTGISIDVSDRQRADDSLRRSEERYRSLVELSPDA 140

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V +     RI   NPA   L+     +   G    ++          +      A  I  
Sbjct: 141 VFI-NLKNRIVFVNPAAVRLFGAASAQQLLGKSPFDLMHPDCHDVIRARIEQQRAGQIAQ 199

Query: 507 FDDERKSLQGTLELLSDSV-LEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEAL 562
             +E+      L L S  + +E S  PL   +     +   +++D  RAE+AL    E  
Sbjct: 200 LIEEK-----VLRLDSSVIDVEVSAAPLNTEEGTAFQVILRDISDRKRAEQALATAKEQA 254

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A   K+ F+ ++S+E+RSP+  I+G   L++ ++   L  +Q +Y+  I +SS  LL+
Sbjct: 255 EAASRAKSEFLANMSHEIRSPMNGIMGMAQLMEYTE---LTDEQREYLNVIRSSSHGLLS 311

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           L+N+ILDL+ ++AG ++L  S   L   ++++ ++  +++H+  + I+         + +
Sbjct: 312 LINNILDLSKIEAGKIELERSDFSLRASIDDIVKAHLSQIHDKGLTIRTDIPAAAPDTLI 371

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKS 737
            D+ RL QI   +L NA+ F+ +G     V +   RD        V + G  IP D  + 
Sbjct: 372 GDQLRLKQILLNLLGNAIKFTCRGGIGISVAVSERRDERVRLRIDVTDTGIGIPTDAMER 431

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F        R   G GLGLSI      L  G +++ S +   +T +  +P
Sbjct: 432 IFKPFTQADSSTTRQYGGTGLGLSICSRLAELMDGKITVESREGSGSTFSVHLP 485



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 27/235 (11%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF---CETVSTLEHGNNKSYKI 279
           ++  E   ++ +        +   E   R      +E+      E  + L  G  +    
Sbjct: 32  RQLEEALQLMRRARAELQPTVTCTEAPFRAPKDGGMERCSTYDREYRTLLPDGKVRWINT 91

Query: 280 --VRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQ 329
               + N  G      GI+IDVS     +D L  + E   +L      A+ I +    + 
Sbjct: 92  QGTTIPNPQGHGQPMTGISIDVSDRQRADDSLRRSEERYRSLVELSPDAVFI-NLKNRIV 150

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           F N + V L+           S  +LL         P+  +    +       + ++  +
Sbjct: 151 FVNPAAVRLFGA--------ASAQQLLGKSPFDLMHPDCHDVIRARIEQQRAGQIAQLIE 202

Query: 390 DTWHLPNGQTLHVIVTSNP---RGGTIW--MFENLTVQVDLETKYNTLVKVQGET 439
           +     +   + V V++ P     GT +  +  +++ +   E    T  +     
Sbjct: 203 EKVLRLDSSVIDVEVSAAPLNTEEGTAFQVILRDISDRKRAEQALATAKEQAEAA 257


>gi|319405334|emb|CBI78952.1| two-component sensor histidine kinase [Bartonella sp. AR 15-3]
          Length = 769

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 110/496 (22%), Positives = 212/496 (42%), Gaps = 40/496 (8%)

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            + +R+  E+       L   P N  L     +A   P+  N+    + +    K     
Sbjct: 281 VYWSRAMYEM-------LGYEPQNALLSISQITAIIDPKDANFFELAQELMDSKKKYIDI 333

Query: 389 KDTWHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                   G  + + + +          + +  +++ Q     +         + I+++S
Sbjct: 334 NVPMRHAKGYYVWMRIRAEVTDEEEPHLVGISFDISEQHQFVEQTAQADLRIRDAIENIS 393

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           E   ++  +GR+ +SN  F       +  L  G     + A      +E          +
Sbjct: 394 ESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKIDETGNL 453

Query: 505 TSFD----------DERKSLQGTLELLSDSVLE---------------YSIIPLPNAQTM 539
           TS            +ER++  G L  +   + E               +S I        
Sbjct: 454 TSIRQTADGYWLKINERRTQDGGLVCVGTDISELKQQQEKFEDSERRLFSFIQELKRARG 513

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                 T+  +  ++L E+ E    A++ K+ F+ ++S+ELR+PL  I+GF++++  S  
Sbjct: 514 NAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPLNAILGFSEIMLQSTF 573

Query: 600 GSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           G L S++  +YV  I  S T LL L+NDILD++ ++AG   L+   I L  +++E  +++
Sbjct: 574 GPLGSQRYKEYVHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEPIISETIRTL 633

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +     I +    + KL + V D + + QIF  ++SNA+ F+  G ++ ++A + N +
Sbjct: 634 TPQAQAKKISLTTNIEQKLHANV-DCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNN 692

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IFS+K+ G  IP++  K +   F    +       G GLGL+I  S + LH G + I+S
Sbjct: 693 LIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITS 752

Query: 777 SDEGVTTINCRIPSKE 792
            +   T +   +P ++
Sbjct: 753 KEAKGTIVTIIMPIQQ 768



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 87/282 (30%), Gaps = 29/282 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGI 231
           I +   +   +  +    +++ +      D+ +     +G + W+   Y+         +
Sbjct: 244 IRARNTDLISEKIQNRIDMAMMRGRCGLWDWNM----ASGRVYWSRAMYEMLGYEPQNAL 299

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH--GNNKSYKIVRVLNSFGE- 288
           +    I            +        +K + +    + H  G     +I   +    E 
Sbjct: 300 LSISQITAIIDPKDANFFELAQELMDSKKKYIDINVPMRHAKGYYVWMRIRAEVTDEEEP 359

Query: 289 --AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              GI+ D+S++    +Q         + + N++ +  ++D    L   N  F E   I 
Sbjct: 360 HLVGISFDISEQHQFVEQTAQADLRIRDAIENISESFVLWDSEGRLVMSNSKFCEYAAIP 419

Query: 343 LAFLATNPSNDELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
              L +      +    R A ++ P +++              +          +G  L 
Sbjct: 420 KQMLQSGIERATVEAMSRPAISEYPLKID-------------ETGNLTSIRQTADGYWLK 466

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           +       GG + +  +++     + K+    +     I  L
Sbjct: 467 INERRTQDGGLVCVGTDISELKQQQEKFEDSERRLFSFIQEL 508


>gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1258

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 110/525 (20%), Positives = 206/525 (39%), Gaps = 37/525 (7%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           + +  E  + +Q      +  N   AI     NR ++  N +F EL+   L  L    + 
Sbjct: 313 VQIQYENELREQKVFFKSLFDNAPEAIIHVGANREIKMLNPAFTELFGYRLDELQGQTT- 371

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GG 411
            ++L +   ++ +     +    +++ + Y+ S   K            +I  ++   GG
Sbjct: 372 -QVL-YAEESDFIKRGQAYNADMKDVLNRYRVSYKSKQGKIFHAETIGSIIRNADGNLGG 429

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I    ++T ++ +E K            D    GV  F         +     L+   E
Sbjct: 430 YIAHIRDVTERLAVEQKMIDTNLRLSIAADAAGIGVWEFDLQDSTLQWDDWMYRLYGFAE 489

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS------------------FDDERKS 513
                 T    +   C    +++   ++F+++  S                  FD   K 
Sbjct: 490 ---DERTSPLQVWDDCVYTEDKNRLAEVFSSLERSGAYFTTKEDASHISKELDFDFRIKR 546

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G +  L  +           +  +   +++T     E  L   ++    A + K+ F+
Sbjct: 547 KDGQVRYLKSNGAIVFNKKGQASHLVGVNMDITSRKETEVLLRNASDQAVAASKAKSDFL 606

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+PL  ++G  +LL  +K   LN +Q+  +  +  S   LL L+ND+LD + +
Sbjct: 607 ATMSHEIRTPLNGVLGMAELLSGTK---LNPEQTTQLNVLKESGEGLLGLINDLLDFSKI 663

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFS 692
           +AG + +      L   + +V + +  +  E  I + V  D     F V D  R+ QI +
Sbjct: 664 EAGHISIERVDFNLEKAIYDVIRLLMMRADEKGIDLLVEYDEVCPRFLVGDVFRIKQILT 723

Query: 693 KILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            ++SNA+ F+S G   V +K   D         SV + G  I + +   +F  FV     
Sbjct: 724 NLISNAIKFTSIGHVLVSVKGIVDKHGMVSITISVADTGVGIADKVQPHLFTAFVQADSS 783

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IP 789
             R   G GLGL+I +  I L  G++S+SS     +T      +P
Sbjct: 784 TTRKFGGTGLGLAITKQLIGLMNGNISLSSKLNVGSTFTVTFALP 828



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G  +   ++ TVQ+  E +            D+  E +   G +  IK+ NPAF  L+  
Sbjct: 302 GNEMTRSQDRTVQIQYENELREQKVFFKSLFDNAPEAIIHVGANREIKMLNPAFTELFGY 361

Query: 470 EENRLS 475
             + L 
Sbjct: 362 RLDELQ 367


>gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1193

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 144/740 (19%), Positives = 275/740 (37%), Gaps = 81/740 (10%)

Query: 116 ENWLKFHHYI---KLSKATEKLRKEGQ----SFDLVAETQNDCAIKIEGRVSGSCAFLRI 168
           E WL   H     +LS    +L          F L  +  N      E R   +      
Sbjct: 55  EAWLALAHADERPQLSTLFARLSANTARGYPPFTLRLKHTNGLWHWFEVRTPCTGTGDGA 114

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             L   ++E+ +       L +    F+ L+++        D+ G I   N   ++  + 
Sbjct: 115 APLVITFNEITQQKQAEAALRDSQLRFRALYNTSPLAFILWDRQGHITEWN---RRAEQM 171

Query: 229 EGIVFQKAIGESRK--LFKEEIKKRMISS--SALEKNFCETVSTLEHGNN------KSYK 278
            G    + IG+     L   E  +    +  + +        +   HG +        Y 
Sbjct: 172 FGWKAAEVIGKQVHHLLLSTEHHEAFADTVRAVMHGTGTGKFTGPAHGKDGVLLVCNWYN 231

Query: 279 IVRVLNSF---GEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFH 331
           +          G   + +D+++E   + ++  + +I   L      AI +   +  L+  
Sbjct: 232 VALRTAQGKLVGILSLLLDITEERLTHQRIEKSEKIYRTLVETSPDAILLLGLDGGLKTA 291

Query: 332 NRSFVELWEIDLAF-LATNPSNDELLEFLRSANKLPEQLNWKTW---KENIFSVYKSSET 387
           N+    L+ +D    L +    D L +   + + L +  ++  +   ++           
Sbjct: 292 NQQAHRLFGLDEMLDLDSTNVRDLLPDNASTEHFLDDPEDFNGFIVTRQLSMQRLDGGRF 351

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT----VQVDLETKYNTLVKVQGE----- 438
             DT       T  +  T  P G  +    ++T     + +LE     L ++  E     
Sbjct: 352 DADTAF-----TTIMDSTGQPTG-IVLFARDVTGKLQAERELEAHREDLERLVQERTYDL 405

Query: 439 ---------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL-SPGTHIRNIAATCS 488
                     ID       V   D +I   N A   +   +   +       +    +  
Sbjct: 406 ENAHDTLAKIIDGSPVPTLVLDADHKITHWNEACEQIIGVKAGDIVGTSNQWKAFYPSQR 465

Query: 489 RYYNESDGWDLFAAIITSFDDERKS---LQGTLEL-----LSDSVLEYSIIPLPNAQT-- 538
               +       A I   + D+ +    +QG  E      +    L ++  PL + Q   
Sbjct: 466 PIMADLVLNGEMAQIQALYSDKYRRSRLVQGGYEAEDFFPMFKRWLFFTAAPLYDKQGRI 525

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T  ++T+  +AE ALTE   A   A E K +F+ ++S+E+R+P+  +IG   LL 
Sbjct: 526 VGAIETLQDITERKQAEIALTEAKHAAEAAAEAKAAFLANMSHEIRTPMNAVIGLAHLLL 585

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G L+ KQ  Y+  I  S  +LL L+NDILD + ++AG M L  +   L+D+L+ V 
Sbjct: 586 K---GDLSGKQRDYISRIHGSGQMLLGLINDILDFSKIEAGRMVLEETEFALDDVLDNVT 642

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +  +  E  + ++ + +  + +  + D  RL QI   +L NA+ F++ GS + +   R
Sbjct: 643 SVLLHRAQEKGLIMQYVVEPDVPTNLLGDPLRLAQILINLLGNALKFTASGS-ITVFVRR 701

Query: 715 DNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
             G     +    V++ G  + ++  + +F  F         +  G GLGL+I +    L
Sbjct: 702 LPGNTARAELEIDVQDTGVGMSQEQQQVLFQAFSQADSSITRKYGGTGLGLTICKRLAQL 761

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G + ++S     +T    
Sbjct: 762 MRGDIWVTSQSGVGSTFTFT 781



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/440 (11%), Positives = 120/440 (27%), Gaps = 79/440 (17%)

Query: 53  KKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE------TPEIIGQLHQRIDIP 106
            ++ +     + + D   ++ +L   +    I+WD +          E +        I 
Sbjct: 122 NEITQQKQAEAALRDSQLRFRALYNTSPLAFILWDRQGHITEWNRRAEQMFGWKAAEVIG 181

Query: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLR-KEGQS-FDLVAETQNDCAI----------K 154
           +    LL     L   H+   +     +    G   F   A  ++   +           
Sbjct: 182 KQVHHLL-----LSTEHHEAFADTVRAVMHGTGTGKFTGPAHGKDGVLLVCNWYNVALRT 236

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            +G++ G  + L          ++ E  L  +++     +++ L ++    +      G 
Sbjct: 237 AQGKLVGILSLL---------LDITEERLTHQRIEKSEKIYRTLVETSPDAILLLGLDGG 287

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----E 270
           +  AN    +    + ++   +    R L  +            + N       L     
Sbjct: 288 LKTANQQAHRLFGLDEMLDLDSTN-VRDLLPDNASTEHFLDDPEDFNGFIVTRQLSMQRL 346

Query: 271 HGNNKSYK------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL--------- 315
            G            +       G    A DV+ ++    +L    E L  L         
Sbjct: 347 DGGRFDADTAFTTIMDSTGQPTGIVLFARDVTGKLQAERELEAHREDLERLVQERTYDLE 406

Query: 316 -------------TVAIAIFDQNRYLQFHNRS--------FVELWEIDLAFLATNPSNDE 354
                         V   + D +  +   N +          ++      + A  PS   
Sbjct: 407 NAHDTLAKIIDGSPVPTLVLDADHKITHWNEACEQIIGVKAGDIVGTSNQWKAFYPSQRP 466

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----- 409
           ++  L    ++ +     + K     + +     +D + +   + L              
Sbjct: 467 IMADLVLNGEMAQIQALYSDKYRRSRLVQGGYEAEDFFPMFK-RWLFFTAAPLYDKQGRI 525

Query: 410 GGTIWMFENLTVQVDLETKY 429
            G I   +++T +   E   
Sbjct: 526 VGAIETLQDITERKQAEIAL 545


>gi|298529548|ref|ZP_07016951.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510984|gb|EFI34887.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1065

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 138/718 (19%), Positives = 275/718 (38%), Gaps = 88/718 (12%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
              +++ ET         G ++G         + GI  ++    +  K L      F+++
Sbjct: 227 DGREILLETLKTPYRDQHGNITG---------IVGIGRDITGRKMAEKALEESEKRFRIV 277

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF---KEEIKKRMISS 255
           F++L   ++  D  G IL AN +  KNT            +   +     E   +     
Sbjct: 278 FENLPGGIFIHDLDGKILMANDTACKNTGYSMQELLNMYIKDIDVHALNPEGRFEAWDLL 337

Query: 256 SALEKNFCETVSTLEHGNNKSYKI----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
              +    E++ T ++G++   ++    + +        +A D++    +   L  +   
Sbjct: 338 REGQSISVESMHTRKNGSSYPTEVYLNAMSLDAKPVIFAVAFDITVRKRMEKALQESESS 397

Query: 312 LHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              L     ++I  FD++  + F N      W ID    A N  + +     RS ++LP 
Sbjct: 398 FKMLAEKCPISIMRFDRHGRVNFVND-----WHIDK--FAFNRLDKDFF-LNRSVHELPG 449

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPN---GQTLHVIVTSNP------RGGTIWMFEN 418
            +N       +  ++K      D    P    G    V + + P        G I + EN
Sbjct: 450 LVN-AGIDHEVAKIFKGRTVEMDEVFFPEFAAGGPGWVSIRAVPVYEKGVVAGGILIREN 508

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG------------PDGRIKLSNPAFRSL 466
           +T +   +       +   +  +     +                 +G   L   ++ + 
Sbjct: 509 ITQRKKADEALRISEQKYRQLFESSPVSLWELDFSEVKKRLDALQAEGVQDLH--SYFAG 566

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-------------S 513
            +     ++    + ++       +      +L   I + FD E +              
Sbjct: 567 RQELIWEMADMVKVLDVNQQSLNLFRARTKRELMTGITSIFDKESQNKNFIQFLKVMACR 626

Query: 514 LQGTLELLSDSVLE--------YSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEA 561
            QG +       L+        Y  +   + Q     +   V+ TD ++  + L +  E 
Sbjct: 627 GQGVVVERDHVTLDGQKLKTQVYWSVASGHEQDYSLVLACIVDNTDLLQTRQQLYQAKEQ 686

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A++ K+ F+  +S+E+R+P+  I+G   L++ +   + + +Q +YV+    S+  L 
Sbjct: 687 AVAANQAKSHFLATMSHEIRTPINGIMGLMQLMQDT---TQDREQQEYVDLALTSAQRLT 743

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            L++DILDL+ V+AG M +        DL   V +       +  + ++ I D  L    
Sbjct: 744 RLLSDILDLSRVEAGKMTIQEEKFSPRDLAGSVAELFKVTAKDRGVSLECILDPGLPGEI 803

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG-DFIFSVKNNGSSIPEDMC 735
           + D  R+ QI   ++ NA+ +S  G+  +    + A R+     +F V + G  IPED  
Sbjct: 804 IGDPARVRQILFNLVGNAVKYSEHGNVNLHMTPVPAGRNEDIRVLFIVSDTGIGIPEDRI 863

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           K++F+ FV        + +G GLGL+I+     L GG++SI S++   T +   +P K
Sbjct: 864 KTLFDPFVQVEDYQTRKHQGAGLGLAIIRRLTQLMGGNISIDSTEGEGTAVYVALPFK 921



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 95/331 (28%), Gaps = 38/331 (11%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL---FKEEIKKRM 252
           + +       ++     G  + AN +  +    +         +            +  +
Sbjct: 23  QDILMHAPVGIFISTPKGLAVSANHALSRMFGYDSPDEFTGTVKDIWSQLYVDSADRAEI 82

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG--------IAIDVSKEITVNDQ 304
           IS    +    +    +   +   +   + + +  +             D+S      + 
Sbjct: 83  ISLVHKQGAVNDHECRMRRRDGSIFWSSQNIRADQDQHGRLNHYQVFITDISARKQSPEP 142

Query: 305 LTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND----ELLEF 358
                   +L  +   I I D +      N +F      D   +           E+ +F
Sbjct: 143 SPTGLTSYVLDTIPDLIFIKDMHGVYIGCNSAFASHLGRDRDEITGKNDYQLYSAEMADF 202

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------G 411
            R  +K       +  K        +S ++++    P+G+ + +     P         G
Sbjct: 203 FREKDK-------QVLKR------AASGSNEEWISYPDGREILLETLKTPYRDQHGNITG 249

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +  ++T +   E       K      ++L  G+ +   DG+I ++N           
Sbjct: 250 IVGIGRDITGRKMAEKALEESEKRFRIVFENLPGGIFIHDLDGKILMANDTACKNTGYSM 309

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             L    +I++I           + WDL   
Sbjct: 310 QELLN-MYIKDIDVHALNPEGRFEAWDLLRE 339



 Score = 44.9 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 83/253 (32%), Gaps = 4/253 (1%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            +IL +  V I I          N +   ++  D     T  +  ++   L   +    +
Sbjct: 23  QDILMHAPVGIFISTPKGLAVSANHALSRMFGYDSPDEFTG-TVKDIWSQLYVDSADRAE 81

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLET 427
           +     K+   + ++     +D     + Q +      + R     +F  +++ +     
Sbjct: 82  IISLVHKQGAVNDHECRMRRRDGSIFWSSQNIRADQDQHGRLNHYQVFITDISARKQSPE 141

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
              T   +    +D + + + +    G     N AF S    + + ++     +  +A  
Sbjct: 142 PSPT--GLTSYVLDTIPDLIFIKDMHGVYIGCNSAFASHLGRDRDEITGKNDYQLYSAEM 199

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           + ++ E D   L  A   S ++      G   LL      Y          +    ++T 
Sbjct: 200 ADFFREKDKQVLKRAASGSNEEWISYPDGREILLETLKTPYRDQHGNITGIVGIGRDITG 259

Query: 548 SVRAERALTEKNE 560
              AE+AL E  +
Sbjct: 260 RKMAEKALEESEK 272


>gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
 gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
          Length = 571

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 218 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 264

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 265 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 321

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L++ ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 322 NHEWKGIV----LVFHDITELKRLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 377

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 378 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHMVLDNK 436

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 437 AGEKEISLQVNV-LKRVSVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 495

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 496 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 555

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 556 EGTTFTVVLPK 566



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 193 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 250

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 251 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 296

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 297 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKRLEQMRKDFL 349


>gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1102

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 143/748 (19%), Positives = 284/748 (37%), Gaps = 95/748 (12%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSL--------DGIYS 176
             L+ A ++L    ++F +          +IE  ++     LR+  L        + +  
Sbjct: 91  SALNDAADQL----KAFAVGGVDYITKPFRIEEILARVKNHLRLRELQKKLAQQNERLEK 146

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG---DILWAN--ISYKKNTETEGI 231
           E+ +  L   KL +  +  +V F++++ +V   D       +   N    Y  +T+  G 
Sbjct: 147 EIWDRQLLEDKLRSSEAAIRVFFEAMNDIVLLIDAEDFSIKVAPTNSTRFYPDDTDILGQ 206

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
             ++  GE+ ++F+ +I+  + +   +   +    S    G       +   +    A +
Sbjct: 207 TIEQFFGENAEIFQSQIRLALDTQQIVNFEYSLLTS---QGEVWFIASITPTSENTVAWV 263

Query: 292 AIDVSKEITVNDQLTHTYE----ILHNLTVAI--AIFDQNRYLQFHNRSFVELWEIDLAF 345
             D+S    V   L  + E    ++ N+  AI   IF+ +  ++F + +  E+     + 
Sbjct: 264 GRDISDRKQVEAALRQSEERFRSLVDNIPGAIYRCIFNSDVRVEFFSDAVEEIVGYQASE 323

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVI 403
                    + + +RS   +    + +  K  I    +        + +   NG    V 
Sbjct: 324 F--------IHDRVRSWTSIVHPQDREMVKLTIQKSLEIRHPFVLEYRVINANGSIRWVY 375

Query: 404 VTS----NPRGGTIWM---FENLTVQVDLETKYNT-------LVKVQGETIDHLSEGVAV 449
                     G  +W+     +++ +   E            L  +    +D   +    
Sbjct: 376 DKGQGCFAQDGSLLWIDGAIFDISDRKQQEETLQRRAKIDSLLSNISRTFLDQDIDTAIN 435

Query: 450 F-----------GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           F                I+ S    +     E         I ++ A  ++ +       
Sbjct: 436 FTLRVMGEYTASDRSYIIRYSESQNQMNNTYEWCAEGIVPLIGDLQAVSTQSFTWFYQQL 495

Query: 499 LFAAIIT--SFDD------------ERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFV 543
           + A ++      D            ER+ +Q T+ + L +S      I L   ++   + 
Sbjct: 496 ISAKVVKIPRLSDLPPEANAEKAALERQCVQSTVNVALMESGNLVGFIGLNTVKSSRNWS 555

Query: 544 NVT---------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +                     AE A  +  +A   A + K+ F+ ++S+ELR+PLT I+
Sbjct: 556 SEEIGLLKIVGEIVAISLARHEAEVAQEKAAKAAFAASKSKSEFLANMSHELRTPLTAIL 615

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G ++ L+    G L +KQ Q +  I  S   LL L+ND+LDL+ +++G M+L+ S   + 
Sbjct: 616 GLSEALRDEVFGPLTAKQHQKLATIEQSGQHLLELINDVLDLSKIESGKMELHLSNTDIQ 675

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L +     +  + H+  I++      ++G    D +R+ Q+   +LSNA+ F+ +   V
Sbjct: 676 GLCDASLAFVRQQAHQKQIKLSAHVPPRIGKVKIDERRMRQLLINLLSNAVKFTPESGAV 735

Query: 709 ILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
            ++   D  +    F V + G  I  +    +F  FV       RR  G GLGL++V   
Sbjct: 736 WIEVKGDLEHETLQFIVADTGIGIAPENIGKLFQPFVQVDSSFTRRYAGTGLGLALVRQV 795

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           I LHGG VS+ S     +     +P K+
Sbjct: 796 IELHGGSVSLESELGSGSRFTVSLPWKQ 823


>gi|268325194|emb|CBH38782.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1036

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 119/679 (17%), Positives = 253/679 (37%), Gaps = 64/679 (9%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            FD     ++   ++  G      A      +   ++E          L+       VL  
Sbjct: 392  FDYKVAIKSGDELEALGDAVNKMA----QRIKNSFTETVIKKELENTLNTMTDTLIVL-- 445

Query: 201  SLDFLVWHRDQAGDILWANISYKKN-----TETEGIVFQKAIGESRKLFKEEIKKRMISS 255
                     D  GDI+ AN +          E  G+ F K +G+ ++  + +I+ + +  
Sbjct: 446  ---------DPDGDIIKANKAAFNLLGYSEAEVIGMSFDKIVGKPKQEEEGKIELKKLIR 496

Query: 256  SALEKNFCETVSTLEHGNNKS---YKIVRVLNSFGE----AGIAIDVSKEITVNDQLTHT 308
                       + L     +    +    + N  GE       A D+++     + L  +
Sbjct: 497  EPEASITNLETTYLTKDRREIPVNFAASIMKNENGELQGIVCNACDITERKQAEEALRES 556

Query: 309  YEILHNLT----VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
             E    ++     +I I D+       N +   L+ +  + +    ++D+L +   + + 
Sbjct: 557  EERFRAISETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGK-TDDDLFDKEAALHI 615

Query: 365  LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENL 419
               +++    K        + +     +        HVI            G   +  ++
Sbjct: 616  R--EVDSHVLKGETVEEEHTKKIKGVLFS------FHVIKVPMRDNSGEVIGLCGIARDI 667

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL----- 474
            T +   E       +      + + +  A    DG I    P+ +S        +     
Sbjct: 668  TERKRAEEALRESEERYRSIFESIQDVYAEVAMDGTILEITPSIQSFSGYAPEEVLGRSL 727

Query: 475  -SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                 +    AA   R        D +  ++        +   T+++++D+    S  P+
Sbjct: 728  AEFYVYPEQRAALLERLRLGGSVND-YEVVLRHKTGRAVTSSFTVKVVTDA----SGTPV 782

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                 + T  +VT+  R +       + L + D++K +F+    +E+RSPL  I+G+  L
Sbjct: 783  K---IVGTMRDVTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASL 839

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+    G LN KQ +YV  I  S++ L  L+  +L++  ++AG  +L+   + + +++N 
Sbjct: 840  LEQ---GELNEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNN 896

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            V +    +       I  +   +      D+Q++  IF  ++SNA+ ++ +   + +   
Sbjct: 897  VLERFGPQADAKKQTISAVV-PEGTEVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVVE 955

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHV 772
                     V + G  IP++     F RF        ++ G+GLGL+IV+ ++ LHGG V
Sbjct: 956  DRKEGIRVCVADTGIGIPKEQLPRAFERFFMADTSLRRKGGLGLGLAIVKGYVKLHGGEV 1015

Query: 773  SISSSDEGVTTINCRIPSK 791
             ++S     +     +P +
Sbjct: 1016 WVTSELGKGSKFWFTLPKR 1034


>gi|119486187|ref|ZP_01620247.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456678|gb|EAW37807.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1955

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 120/662 (18%), Positives = 237/662 (35%), Gaps = 68/662 (10%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            ++ L  +  ++ +     + L    + +  + +     +      G + + N +Y     
Sbjct: 1086 LVELQSVGRDINDRKRVEELLHQSEARYLSILEYQTEFITRFKPDGKLSYVNEAY---CR 1142

Query: 228  TEGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
              GI  +  +G   +       +  I + +   S  +  F      + +G  +  +    
Sbjct: 1143 YFGISKEDFLGHCYQPIIYPEDQATIDRYLAQISPQQPVFNIENRVIVNGEVRWTQWTNQ 1202

Query: 283  LNSFGE------AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
                 +        +  D++    V   L    +            I IFD     +  N
Sbjct: 1203 AIYDTQGNLVELQSVGRDINDRKQVELALKRVNQQLQAFFDYSPAIIHIFDAEMVYRRVN 1262

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            R+F  L+ +    +          +F        E +N    +  I          +D  
Sbjct: 1263 RAFANLFNLSEEQIVGR----TFGDFFPE-----EIVNRFRTRVKILVDGGKPLIIEDEL 1313

Query: 393  HLPN-GQTLHVIVTSN-PRGGTIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             + +  +    I+       G   +F     +++ +   E +      ++       ++ 
Sbjct: 1314 VINDQSKIFESILFPLIDDNGKFTLFGSIVTDISERKQAELELRKSRDLRDAIFHESADA 1373

Query: 447  VAVFGPDGR-IKLSNPAF---------RSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            + +   D   I   N              L       L                 N+   
Sbjct: 1374 IFLVDVDSILIVDCNRRAVELFEAQKREELIGIAGYTLQKQPFTPQEIEYSRNEVNQKGF 1433

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT---FVNVTDSVRAER 553
            W+L    IT  ++   +  G L          ++ P+     M       +++D  + E 
Sbjct: 1434 WNLEVEYITKKEN---TFWGNL----------AVKPIYIGDQMFHLVRVTDISDRKQIEL 1480

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L +  E    A E K +F+ ++S+ELRSPL  I+GF+ LLK +   SL+    +  E I
Sbjct: 1481 ELQKAKEVAEAASEAKGAFIANMSHELRSPLNAILGFSRLLKNNSQISLDE--RKNAEII 1538

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672
              S   LLNL+N +LDLA ++A  + +  + + L+ L++++      K  E  +   V  
Sbjct: 1539 YRSGEHLLNLINQVLDLAKIEANRITVEPTDLNLDQLIDDIYNMFYLKAQEQGLNFNVQK 1598

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI--FSVKNNG 727
            +     S   D  +L Q+F  +LSNA+ F+ +G     + +K+ + + + +  F V++ G
Sbjct: 1599 TSDVPCSICTDEIKLRQVFINLLSNALKFTKRGFITLNISVKSKKSDNNVMLNFEVEDTG 1658

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
              I  +    +F  F  +    Q + G GLGL+I   FI L GG +S+ S     +    
Sbjct: 1659 VGIAPEEQTDIFEAFNQSQAGKQVKEGTGLGLAISREFIKLMGGEISVESQVNIGSKFQF 1718

Query: 787  RI 788
             I
Sbjct: 1719 YI 1720



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/569 (14%), Positives = 175/569 (30%), Gaps = 54/569 (9%)

Query: 47   QRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET----PEIIGQLHQR 102
            Q+N   +   E       +     +   ++         WD  + T    P++  +L   
Sbjct: 572  QKNYQQQLEQEITERTLALQKSEERLKLVIAAMGEGIWDWDIINNTAWWSPQLY-KLLGL 630

Query: 103  IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF--DLVAETQNDCA--IKIEGR 158
                     +  F N++       L +A     +    +  +L  +  +       I+G+
Sbjct: 631  SVAEIEADPVPQFSNFVHPDDRDHLQQALTDHLENNHPYIIELRVQRSDGRYRWFLIKGQ 690

Query: 159  VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW--HRDQAGDIL 216
             S      +   + G +S++       +KL       +         ++    +  G + 
Sbjct: 691  ASR-YPNGKPERMVGSFSDITNRKQIEEKLGKTEQWLQQYSRQSPSSIYTLVLEPDGRLW 749

Query: 217  WANISYKKNTETEGIVFQKAIGESRKLFKEE---------IKKRMISSSALEKNFCETVS 267
            +   S     ET   V      E+  L  E+         +     S+ +LE    E   
Sbjct: 750  FEYTS--SAVETIHEVTLAQALENANLVIEQMHPDDRAGYLAAWTRSAESLELFSHEWRI 807

Query: 268  TLEHGNNKSYKIV-----RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA---- 318
                G  K  +       R   +    G+  D+S+     + L  + E    L  A    
Sbjct: 808  ITPTGQLKWLQATSKPERRSNGAIAWHGVIQDISEHKQAQEALRRSEERFQELAAASPGV 867

Query: 319  --IAIFDQNRYL--QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
                I   N  +  ++ + +F ++ EI         S + +LE          + +   +
Sbjct: 868  IYTVIEYPNGPVCYEYLSPAFEDIHEI---------SVESVLEDATITFNQIHRDDRDGY 918

Query: 375  KENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR----GGTIW--MFENLTVQVDLE 426
            K+ I    +S +  K  W +  P+G+   +   S P+    G   W  + ++++ +   +
Sbjct: 919  KQAIKESLESGKPFKYEWRIFTPSGKIKWIQANSRPQRRENGEIAWHGVVQDISERKQAQ 978

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
               +         +++ +E V  F PDG++   N AF   +    + +    +   I   
Sbjct: 979  ELLHQSEARYLSILEYQTELVTRFKPDGKLSYVNEAFCRYYGVSRDEVIGHCYQPRIYPE 1038

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                 +      L         + R  + G +  +  +            +      ++ 
Sbjct: 1039 DQPIIDRC-LAQLSPQQPVGIVEHRVIVNGEVRWMQWTNQAIYDTEGNLVELQSVGRDIN 1097

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQH 575
            D  R E  L +         E +  F+  
Sbjct: 1098 DRKRVEELLHQSEARYLSILEYQTEFITR 1126



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 103/309 (33%), Gaps = 48/309 (15%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S    +         +L N+ + ++I D+N      N+   ++    +   + +  ++  
Sbjct: 436 SSFQALKLSEQRFSSLLDNIPIGVSILDRNGQHILINKVSEQILGQGIKTTSYDQISEVY 495

Query: 356 LEFLRSANKL---PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-- 410
             ++   N+L    E   +++ K     V        D     NG+ + + VTS P    
Sbjct: 496 QVYIAGTNQLYPTEELPGFRSLKGEKVQV-------DDMEVEVNGRRIPLEVTSIPVFDE 548

Query: 411 -----GTIWMFENLTVQVDLET------------------KYNTLVKVQGETIDHLSEGV 447
                 +I  F+++T +  +E                         +     I  + EG+
Sbjct: 549 WGTVHYSIIAFQDITERHHIEQLQKNYQQQLEQEITERTLALQKSEERLKLVIAAMGEGI 608

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
             +       ++N A+ S    +   LS      +     S + +  D   L  A+    
Sbjct: 609 WDWD-----IINNTAWWSPQLYKLLGLSVAEIEADPVPQFSNFVHPDDRDHLQQALTDHL 663

Query: 508 DDERKSLQGTLELLSDSVLEYSII-----PLPNA---QTMLTFVNVTDSVRAERALTEKN 559
           ++    +       SD    + +I       PN    + + +F ++T+  + E  L +  
Sbjct: 664 ENNHPYIIELRVQRSDGRYRWFLIKGQASRYPNGKPERMVGSFSDITNRKQIEEKLGKTE 723

Query: 560 EALRKADEI 568
           + L++    
Sbjct: 724 QWLQQYSRQ 732



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 56/456 (12%), Positives = 147/456 (32%), Gaps = 70/456 (15%)

Query: 167 RILSLDGIYSELAETTLK----CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
           RI  ++ +    AE   +     + L      F  L D++   V   D+ G  +  N   
Sbjct: 416 RIKEINQLTDSFAEMAAQLNSSFQALKLSEQRFSSLLDNIPIGVSILDRNGQHILINKVS 475

Query: 223 KKNT---------ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           ++           +    V+Q  I  + +L+  E       S   EK   + +    +G 
Sbjct: 476 EQILGQGIKTTSYDQISEVYQVYIAGTNQLYPTEELPG-FRSLKGEKVQVDDMEVEVNGR 534

Query: 274 NKSYKIVRVL--NSFGEAGIAI----DVSKEITVNDQLTHTYEILHN------------- 314
               ++  +   + +G    +I    D+++   +     +  + L               
Sbjct: 535 RIPLEVTSIPVFDEWGTVHYSIIAFQDITERHHIEQLQKNYQQQLEQEITERTLALQKSE 594

Query: 315 ---------LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                    +   I  +D      + +    +L  + +A +  +P   +   F+      
Sbjct: 595 ERLKLVIAAMGEGIWDWDIINNTAWWSPQLYKLLGLSVAEIEADP-VPQFSNFVH----- 648

Query: 366 PEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIV----TSNPRG---GTIWMF 416
               +    ++ +    +++  +  +      +G+    ++    +  P G     +  F
Sbjct: 649 --PDDRDHLQQALTDHLENNHPYIIELRVQRSDGRYRWFLIKGQASRYPNGKPERMVGSF 706

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGV--AVFGPDGRI--KLSNPAFRSLWKTEEN 472
            ++T +  +E K     +   +        +   V  PDGR+  + ++ A  ++ +    
Sbjct: 707 SDITNRKQIEEKLGKTEQWLQQYSRQSPSSIYTLVLEPDGRLWFEYTSSAVETIHEVTLA 766

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +     ++                W   A  +  F  E + +  T +L     L+ +  P
Sbjct: 767 QALENANLVIEQMHPDDRAGYLAAWTRSAESLELFSHEWRIITPTGQL---KWLQATSKP 823

Query: 533 LPNAQTMLTFV----NVTDSVRAERALTEKNEALRK 564
              +   + +     ++++  +A+ AL    E  ++
Sbjct: 824 ERRSNGAIAWHGVIQDISEHKQAQEALRRSEERFQE 859



 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 54/162 (33%), Gaps = 8/162 (4%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +  Q++          +     +D++  GV++   +G+  L N     +        
Sbjct: 427 FAEMAAQLNSSFQALKLSEQRFSSLLDNIPIGVSILDRNGQHILINKVSEQILGQGIKTT 486

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPL 533
           S    I  +        N+    +      +   ++ +     +E+    + LE + IP+
Sbjct: 487 SYDQ-ISEVYQVYIAGTNQLYPTEELPGFRSLKGEKVQVDDMEVEVNGRRIPLEVTSIPV 545

Query: 534 PNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +        ++ F ++T+    E+      + L +    + 
Sbjct: 546 FDEWGTVHYSIIAFQDITERHHIEQLQKNYQQQLEQEITERT 587


>gi|110597907|ref|ZP_01386189.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340484|gb|EAT58970.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 892

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 112/656 (17%), Positives = 244/656 (37%), Gaps = 60/656 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R   L  +  ++ +     +      ++F  L +++    +  D      W   ++    
Sbjct: 115 RTSQLYIVAQDITDLKRAERDAETTQTLFGALKEAVPGAFYMLDAE----WHYAAWNAYQ 170

Query: 227 ETEGIVFQKAIGESRKLFK-------EEIKKRMISSSALEKNFCETVSTLEHGNNK--SY 277
               +    A   S             ++ ++M +         + V  L  G  +   +
Sbjct: 171 RDVVVGRPDAAMASFTAIDAIHPDDRSKVGEKMANIMKSGVEESDVVRVLIQGGPRFRWF 230

Query: 278 KI----VRVLNSFGEAGIAIDVSK-----EITVNDQLTHTYEILHNLTVAIAIFDQ-NRY 327
           ++    V +       G+  DV++     +  +++      ++    +    + D     
Sbjct: 231 QLSGKRVFIKEKPFLIGVGTDVTEHKMKEDEALHNSEERLRKLFDEHSAVKLVLDPLTGN 290

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           +   N +    +   +  L          + +R  +  PE+      +++  S       
Sbjct: 291 IIDANHAAAAFYGWSIDEL--------CRKHIREVDTHPEEELKHLLEQDRVS---EKNQ 339

Query: 388 HKDTWHLPNG--QTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDH 442
                   +G  + + V  ++   GG   ++    ++T +   E +   L     ++   
Sbjct: 340 FPFQHRRADGSLRDVEVFSSNINVGGRELLYAIVHDVTERRAAERELQKLSVAMQQS--- 396

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
               V +    G I+  NPAF       +  +         + T  +   E     + A 
Sbjct: 397 -HAIVVITDLKGDIEYVNPAFTIASGYSQEEVIGKNPRILQSGTMQQSVYEELWGTILAG 455

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTE 557
            +   +   +   G     S       I P+ N + ++T       ++T+  +    L  
Sbjct: 456 GVWKGEMYNRRKNGEFYWES-----AVISPVLNEEGVITNFVAIKEDITEKKKLWSELIA 510

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E   ++D +K +F+ ++S+E+R+P+  I+G +++LK   L     +QS Y++ I  S 
Sbjct: 511 AKEHAEESDRLKTAFLANISHEIRTPMNGIVGLSEILKDPDLSK--EEQSLYIDLIDQSC 568

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS--DG 675
             LL L+NDI+D++ ++AG   +  S   +N  L ++         +  +R+   +    
Sbjct: 569 QRLLYLINDIIDISRIEAGKTNVKISRTPVNTTLRDLHAFFKPLAEQKGLRLSCTTGLSD 628

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D  +L QI + +L NA+ F+ +G  +    AR+     F V ++G  I  DM 
Sbjct: 629 SESVIETDSTKLTQILTNLLQNALKFTREGH-IDFGYARNKNTLEFYVADSGIGISPDMQ 687

Query: 736 KSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F RF    +       G GLGLSI +++I + GG +S+ S++   +     +P
Sbjct: 688 TKIFERFRQADNSLTRNYEGAGLGLSISQAYIEMLGGLISVKSTEGKGSEFIFTLP 743



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 117/390 (30%), Gaps = 26/390 (6%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             K +      S    +FD++D   +  D+ G IL AN ++ +    E          + 
Sbjct: 9   EEKERNAQQRESTLNAVFDAVDEPAFIMDREGTILDANQAFARVYHKEVPACINI--NAY 66

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA------GIAIDV 295
             F  E+       +         +   +      Y+      +  +        +A D+
Sbjct: 67  DFFPPELAATRRIKAEEVFCTGRRMIYEDEQEGHCYRNTLYPIAGLDGRTSQLYIVAQDI 126

Query: 296 SKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVE-LWEIDLAFLATNP 350
           +           T  +   L  A+     + D   +    N    + +     A +A+  
Sbjct: 127 TDLKRAERDAETTQTLFGALKEAVPGAFYMLDAEWHYAAWNAYQRDVVVGRPDAAMASFT 186

Query: 351 SNDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           + D +   +  +   K+   +     + ++  V       +  W   +G+ + +      
Sbjct: 187 AIDAIHPDDRSKVGEKMANIMKSGVEESDVVRVLIQGGP-RFRWFQLSGKRVFIKEKPF- 244

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSL 466
               I +  ++T     E    +   +   +  D  S    V  P  G I  +N A  + 
Sbjct: 245 ---LIGVGTDVTEHKMKEDEALHNSEERLRKLFDEHSAVKLVLDPLTGNIIDANHAAAAF 301

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +    + L    HIR +              D  +     F  + +   G+L  +   V 
Sbjct: 302 YGWSIDEL-CRKHIREVDTHPEEELKHLLEQDRVSE-KNQFPFQHRRADGSLRDV--EVF 357

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
             +I             +VT+   AER L 
Sbjct: 358 SSNINVGGRELLYAIVHDVTERRAAERELQ 387


>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
 gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
          Length = 1322

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 98/413 (23%), Positives = 171/413 (41%), Gaps = 32/413 (7%)

Query: 401 HVIVTSNPRGGTIW-----MFENLTVQVDLETK----YNTLVKVQGETIDHLSEGVAVFG 451
           HV V  +   G I      + + +T ++    +      +  +      ++  EG+    
Sbjct: 432 HVFVEPHSEVGQIAAEYNRVLDRVTDEIRAREETTHALKSAEEKYRSIFENAVEGIFQTS 491

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           P G     NPA   ++  +    SP   I +I       Y +      F  +I + +   
Sbjct: 492 PSGIYMNVNPALAKIYGYD----SPNDLIGSIGDISKDLYVDPQRRAEFCRLIET-EGAV 546

Query: 512 KSLQGTLELLSDSVLEYS--IIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRK 564
           K     +     S +  S    P+ NA   + +      +VT+  RAE+    +      
Sbjct: 547 KGFVSEVYRRDGSTIWISENAHPVKNAAGRILYYEGSVEDVTEVRRAEQ-WRAEKAEAEA 605

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+E K+ F+  +S+E+R+PL  +IG  DLLK +   SL+ +Q +YV    +S+  LL L+
Sbjct: 606 ANEAKSQFLAKMSHEIRTPLNGVIGMLDLLKAT---SLDDRQKRYVTICRSSADTLLGLI 662

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           NDILDL+ ++AG M+L      L+ L+ ++ +    +     + +       +      D
Sbjct: 663 NDILDLSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGD 722

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAARD---NGDFIFSVKNNGSSIPEDMCKSVF 739
            +RL QI   ++ NA+ F+S G   + +  A+           VK+ G  I     + +F
Sbjct: 723 PERLRQILVNLVGNALKFTSVGYVLIKVSMAQSPTGEHRLQIHVKDTGIGISPAQQQKLF 782

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             F         +  G GLGLSI     +L  G + I S+    TT    +P 
Sbjct: 783 QPFTQADVTTSRRFGGTGLGLSICRQLADLMQGSIQIESAVGVGTTFTVDLPL 835



 Score = 38.8 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/205 (9%), Positives = 54/205 (26%), Gaps = 26/205 (12%)

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
           +             +          +  F E  S +     +  +++  +          
Sbjct: 406 EHGASNDLAELMSTMNDHRTRGDFSQHVFVEPHSEVGQIAAEYNRVLDRVTD-------- 457

Query: 294 DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           ++         L    E    I  N    I     +      N +  +++  D    + N
Sbjct: 458 EIRAREETTHALKSAEEKYRSIFENAVEGIFQTSPSGIYMNVNPALAKIYGYD----SPN 513

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP- 408
                + +  +     P+    +     +     + +      +  +G T+ +   ++P 
Sbjct: 514 DLIGSIGDISKDLYVDPQ---RRAEFCRLIETEGAVKGFVSEVYRRDGSTIWISENAHPV 570

Query: 409 --RGGTIWMF----ENLTVQVDLET 427
               G I  +    E++T     E 
Sbjct: 571 KNAAGRILYYEGSVEDVTEVRRAEQ 595


>gi|167762689|ref|ZP_02434816.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
 gi|167699029|gb|EDS15608.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
          Length = 906

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 112/508 (22%), Positives = 214/508 (42%), Gaps = 16/508 (3%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +T     ++N T  I    ++  L F NR F E   I +    + 
Sbjct: 233 GYIQNITDIQQRRNDITLLTHAINNSTEDIFAAREDGTLVFANRRFREHHNISITDDVST 292

Query: 350 PSNDELLEFLRSANKLPEQLN---WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
            +   +    +      ++L     K  K N F +Y     H +   +  G    V  TS
Sbjct: 293 LNIYRINANAQQDENSWQRLIKSLRKGEKRNGFILYHPLPEHPEVLAM-EGSAYWV--TS 349

Query: 407 NPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +     +W F  ++T ++  E +     ++  +TI++L  G+ V       K       S
Sbjct: 350 DKGEAILWGFSRDITQRIRNEQQIKRFSQILDKTIENLPAGIVVKDIQSGFKYLYRNRES 409

Query: 466 LWKTEENRLSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             +    + + G    +      ++   + D       I   +  E     G    L   
Sbjct: 410 YNRNIPLKEALGKDDFDFYPPELAQEKRKQDVEIARTGIEKHWITEEHDQNGKSIFLDKR 469

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +       P    +    ++T+  R +R L    E    +D++K++F+ ++S+E+R+PL
Sbjct: 470 KVRIESNDFPPI-LLSIEWDITEMERMKRELLVAKEKAETSDQLKSAFLANMSHEIRTPL 528

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ ++  S       ++  Y + + A++  LL L+N+ILDL+ ++AGI++   + 
Sbjct: 529 NAIVGFSRIIAESTDA---EERQNYYDIVEANNERLLQLINEILDLSKIEAGIVEFTITP 585

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L+ L  E+  ++  +  E  + +   +  +  +   D+ R+ Q+ S ++ NA  F+++
Sbjct: 586 VRLHPLCKEIHDALKFRCPE-GVELVYEASDEEITVEGDKNRIFQVISNLIGNAFKFTTR 644

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           GS V     R   +  F V + G  I  D    VF RFV      Q  G GLGLSI ++ 
Sbjct: 645 GS-VGYGYRRKGNEIEFYVSDTGIGIQTDKLAKVFERFVKVNTFAQ--GTGLGLSICKTI 701

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           I   GG +S+ S     TT    +P  +
Sbjct: 702 IERLGGTISVCSEVGKGTTFTFTLPLAK 729



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 122/374 (32%), Gaps = 51/374 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-------------G 230
             ++  N I++     ++    ++   + G +++AN  ++++                  
Sbjct: 240 DIQQRRNDITLLTHAINNSTEDIFAAREDGTLVFANRRFREHHNISITDDVSTLNIYRIN 299

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
              Q+     ++L K   K    +   L     E    +      +Y +          G
Sbjct: 300 ANAQQDENSWQRLIKSLRKGEKRNGFILYHPLPEH-PEVLAMEGSAYWVTSDKGEAILWG 358

Query: 291 IAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
            + D+++ I    Q+    +IL     NL   I + D           F  L+    ++ 
Sbjct: 359 FSRDITQRIRNEQQIKRFSQILDKTIENLPAGIVVKDIQ-------SGFKYLYRNRESYN 411

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQTL----- 400
              P  + L +     +  P +L  +  K+++       E H     H  NG+++     
Sbjct: 412 RNIPLKEALGK--DDFDFYPPELAQEKRKQDVEIARTGIEKHWITEEHDQNGKSIFLDKR 469

Query: 401 HVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            V + SN     +   E ++T    ++ +   + K + ET D L              L+
Sbjct: 470 KVRIESNDFPPILLSIEWDITEMERMKREL-LVAKEKAETSDQLKSAF----------LA 518

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +       L+       I A  +      + +D+  A           +   L 
Sbjct: 519 N-----MSHEIRTPLNAIVGFSRIIAESTDAEERQNYYDIVEANNERLLQLINEI-LDLS 572

Query: 520 LLSDSVLEYSIIPL 533
            +   ++E++I P+
Sbjct: 573 KIEAGIVEFTITPV 586


>gi|218438074|ref|YP_002376403.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170802|gb|ACK69535.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1068

 Score =  319 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 143/842 (16%), Positives = 295/842 (35%), Gaps = 123/842 (14%)

Query: 51  LAKKVNETYSFLSEICDQLSKY----HSLLTENN--CLTI------VWDGKDETPEIIGQ 98
           L +K  +  + L ++  +  K       L        L +      +WD   +T E+   
Sbjct: 10  LEEKNQQLEAELEKLRQEQQKNLQIQEKLTESEERWQLVLRGTNDGIWDWNLKTNELFLS 69

Query: 99  LHQRIDIPQTDTDLL-SFENWLKFHHYIKLSKATEKLRKEGQS--------FDLVAETQN 149
              +  +   D +L   F+ W    H   + +  E L +  +         F L  +  +
Sbjct: 70  PRWKEMLGYQDEELENHFKTWRTLLHPKDVERVMETLHEHFERKTDYYVVEFRLRCKDGS 129

Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
              I   G+     +  + + + G ++++++   +        S+ + L D +  L++++
Sbjct: 130 YKWILSRGQALWDHSG-KPVRMAGSHTDISDRKARQ-------SLLRSLIDCIPDLIFYK 181

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMIS---SSALEKNFCET 265
           D  G     N ++ +    +    ++ IG+    LF E +  +M         +KN    
Sbjct: 182 DAQGIYRICNKAFAEFVGCKD---KQIIGKTDFDLFPETLALKMRDYDHQLMTQKNSRRH 238

Query: 266 VSTLE--HGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
              ++   G+ +    ++           G  GI+ D++        L    +   +L  
Sbjct: 239 EEWVDYCDGSRRLLDTLKTPLLGADGELLGVIGISRDITDRKQKEKALEQQAQR-DHLLS 297

Query: 318 AIA--------------IFDQNRYLQFHNRSFVE-------LWEIDLAFLATNPSNDELL 356
            IA              I      L   + +++        LW +   +   NP N  + 
Sbjct: 298 NIARQLIDQELDTAINYILQATGDLTGSDHAYIIRFSDCQGLWSMSYEW--CNPLNPNVE 355

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYK----------SSETHKDTWHLPNGQTLHVIVTS 406
             +     L   +N   W        K            +   +   L N  T  +++  
Sbjct: 356 GEIEKCQNL--SVNTFPWFAQQLLSGKIVKINQLKDIPPDATAEQEALKNSLTPSMLIVP 413

Query: 407 NPRGGTI-------------WMFENL-------------TVQVDLETKYNTLVKVQGETI 440
               G               W  E +               + + +             +
Sbjct: 414 MINAGKTLGYLGLDAGASKKWTKEEVNLLKLIGEFIAIAEARQEAKEALQESEARFAGIL 473

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D+ +E +        I+L N A   ++    + +        + +  +  +         
Sbjct: 474 DNANEAIISIDESHHIRLFNHAAEKIFGYGGDEVMGKPFDLLLPSRYTESHRHYLELFEQ 533

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFVNVTDSVRAERALTE 557
                     R+ + G  +   + + E SI  L      +      ++T+  +AE AL +
Sbjct: 534 GDETAREMGGREPVFGRRKDEREFLAEVSISKLNQRGKTIFTAIVRDITERKQAEEALKK 593

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             EA   A+  K+ F+  +S+ELR+PL  I+GFT +L  +    L  +    ++ IS S 
Sbjct: 594 AKEAADNANRAKSEFLASMSHELRTPLNAILGFTQVLGRNSY--LTEEDKTNLDIISRSG 651

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+NDIL+++ ++AG    N  +  L  LL+ ++  +  +     +++       +
Sbjct: 652 EHLLDLINDILEMSKIEAGRTTFNEGSFDLYQLLDSLENMLRLRAEAKGLQLIFDRVSDV 711

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------DFIFSVKNNG 727
             F+  D  +L Q+   +L NA+ F+ +G  V L+                 IF +++ G
Sbjct: 712 PQFIQTDEGKLRQVLINLLGNAIKFTEQGG-VTLRVKTGGMMPSSLSKKIKIIFEIEDTG 770

Query: 728 SSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  +    +F  F    + R   +G GLGL I + F+ L GG + ++S     +    
Sbjct: 771 LGIASEEIDKLFEAFGQTESGRNSHQGTGLGLPISQKFVELMGGKIGVNSILGRGSIFTF 830

Query: 787 RI 788
            I
Sbjct: 831 DI 832


>gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 927

 Score =  319 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 103/514 (20%), Positives = 197/514 (38%), Gaps = 44/514 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +S    V +QL  T   +  L   + +      + + N    +  + +   L        
Sbjct: 144 ISLRRGVEEQLRMTQFAIDRLGDMVFLISPQGKIVYVNEKACQKLQYEKEQLLQLSIEQI 203

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSN----- 407
               + +           +WKE+     KS +T     HL   N     V + SN     
Sbjct: 204 GCGHIET-----------SWKEHWLK-LKSYQTLTFQSHLRTKNSIQFPVEIQSNYVKTS 251

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                     ++T +V  E +   L +     +++    + +   +G I+  NP F  + 
Sbjct: 252 SHEYNYAFIRDITDRVHQEERLRLLSR----AVEYGPASIVITDAEGHIQYVNPKFEKIT 307

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                 +     I N  +       E   +D     I+   + R  L    +  S     
Sbjct: 308 GYGAEEV-----IGNKPSLLKSGQTEPAIYDALWDSISRGHEWRGELINKRKDGSLYWEM 362

Query: 528 YSIIPL------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             I P+           +    ++T     E  L    +    A   K+ F+  +S+E+R
Sbjct: 363 AHISPVLSKTSGKITHFVGIKEDITSLKETEAHLELTQKKAEAASLAKSEFLATMSHEIR 422

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+G T+LL  ++   L+ +Q  ++    ++   LL ++NDILD++ V++G ++L 
Sbjct: 423 TPMNAILGMTELLGETQ---LSIEQRGFLSVCRSAGENLLQIINDILDISKVESGGLELQ 479

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNI-RIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +    L  ++ +  + I  + HE  + ++  I +      + D  R+ QI    L NA+ 
Sbjct: 480 HVPFNLRRIVYDAGEVIRFRSHEKGLHQLIFIDESVPEWLLGDPARIRQILINFLGNAIK 539

Query: 701 FSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           F+  G+   + +         + +F V + G  IPE     VF+ F       QRR  G 
Sbjct: 540 FTEAGTIATVVSTTAGKGSQVEIVFRVIDTGIGIPESKQSVVFDAFKQLDSSTQRRYGGT 599

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL+I +   +L GG + + S +   +T    +
Sbjct: 600 GLGLTISKKLADLMGGQLGLKSQEGHGSTFTLSL 633



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 88/290 (30%), Gaps = 32/290 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           ++L  +    E        + +   + + +   D L  +V+     G I++ N    +  
Sbjct: 132 KLLEANRQLRESISLR---RGVEEQLRMTQFAIDRLGDMVFLISPQGKIVYVNEKACQKL 188

Query: 227 ETEGIVFQKAIGESR---KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI---- 279
           + E     +   E      +     +  +   S     F   + T        + +    
Sbjct: 189 QYEKEQLLQLSIEQIGCGHIETSWKEHWLKLKSYQTLTFQSHLRTKNSIQ---FPVEIQS 245

Query: 280 --VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
             V+  +         D++  +   ++L      +     +I I D   ++Q+ N  F +
Sbjct: 246 NYVKTSSHEYNYAFIRDITDRVHQEERLRLLSRAVEYGPASIVITDAEGHIQYVNPKFEK 305

Query: 338 LWEID--------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           +             + L +  +   + + L  +     +     W+  + +  K    + 
Sbjct: 306 ITGYGAEEVIGNKPSLLKSGQTEPAIYDALWDSISRGHE-----WRGELINKRKDGSLYW 360

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +  H+    +  +  TS      + + E++T   + E       K     
Sbjct: 361 EMAHI----SPVLSKTSGKITHFVGIKEDITSLKETEAHLELTQKKAEAA 406


>gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 592

 Score =  319 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 94/393 (23%), Positives = 174/393 (44%), Gaps = 25/393 (6%)

Query: 400 LHVIVTSNPR-GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           L V V      G    +  +++V+++ +  + +T        +  + EG+ V    G I 
Sbjct: 215 LRVPVKGRDELGELAMIMNDMSVRIEGQLARISTERNRLDTILRGMGEGLMVTDAKGTIT 274

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L NPAFR L    E     G  + +I                +  II S  +  + +  T
Sbjct: 275 LVNPAFRDLLAITEEV--EGRPLIDITR-------HPALHSAYKTIIASKSERLEEI--T 323

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L+   +  +    +PL +           D ++   A+      +++ ++I+  FV +VS
Sbjct: 324 LDAKGEKTILTHWVPLLDG----------DRLQGVVAVFHDISNIKRLEKIRRDFVANVS 373

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+T I G+ + L +  L S   +  ++VE I + S  L +L+ D+L L+ +++G 
Sbjct: 374 HELRTPVTVIKGYAETLLSGALASDPERAVRFVEIIHSHSERLTSLIGDLLTLSELESGD 433

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + L  S + +   +      +  K  +  I I   +       + DR RL Q+   +L N
Sbjct: 434 VSLELSMVNIEGTVRHALMLLEQKAADKGITIDCSTIKAAPPILGDRGRLEQVLINLLDN 493

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ ++ +  T+ +KAA +      SV + G  IP      +F RF         ++ G G
Sbjct: 494 AIKYTPEKGTITVKAADEEKMLKISVTDTGMGIPPKDLPRIFERFYRVDEARSREQGGTG 553

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSIV+  +  HGG +S+ S+    +T +  +
Sbjct: 554 LGLSIVKHIVQAHGGALSVESTVGKGSTFSFTL 586



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 11/135 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +   ++ +      IL  +   + + D    +   N +F +L  I    +   P  D   
Sbjct: 242 QLARISTERNRLDTILRGMGEGLMVTDAKGTITLVNPAFRDLLAITEE-VEGRPLIDITR 300

Query: 357 -EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              L SA K       +  +E                 L +G  L          G + +
Sbjct: 301 HPALHSAYKTIIASKSERLEEITLDAKGEKTILTHWVPLLDGDRLQ---------GVVAV 351

Query: 416 FENLTVQVDLETKYN 430
           F +++    LE    
Sbjct: 352 FHDISNIKRLEKIRR 366


>gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 968

 Score =  319 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 99/502 (19%), Positives = 209/502 (41%), Gaps = 26/502 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA-TNPSNDELLE 357
             + +      +I H+    I I      +         L +++ +FL  T  S  EL+ 
Sbjct: 484 TALKESQDKFAKIFHSSPDPILI----HQIITKILQGCVLLDVNASFLNFTGYSEVELIG 539

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-----SNPRGGT 412
           +      L      +   +            +  W   +G+    +V+      + +   
Sbjct: 540 YSFDNLSLVSNPEQELLLKEQLKNQGYVRNLEFDWLTKSGEVKTSLVSCESIVIDNKNSV 599

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +++T +   E       +      ++   G+A+   +G     N A   +   +  
Sbjct: 600 ISIIKDITDRKKAEENLRQSEERFRTAFENAGSGMALVSLNGYFIRVNRALCQMLGYDSR 659

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L     +  +        +    +   +  IT++  E+  L  + +++   +L  S++ 
Sbjct: 660 DLLTKN-VTELITGEELPKDFDLAYQFLSGQITNYQVEKSCLHKSGKII-WVLLNVSLLC 717

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N   +     + D                + +++KN FV  VS+E+R+PLT I G  +
Sbjct: 718 DVNGNPLHFIWQIQDISER-----------HEVEQLKNEFVSVVSHEVRTPLTAIKGALE 766

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L T  L     +  Q ++   ++S  LL LVN+IL+L  +D+G M+LN     +N ++ 
Sbjct: 767 ILATGILVDEPQEAEQMLKIAVSNSERLLRLVNNILNLEMLDSGKMRLNLELCDINIMVK 826

Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  +++     +N+I I   + D      +AD + ++Q+ + +LSN++ FS  G+ V + 
Sbjct: 827 QAMETVQPIAQQNSIEISYSALDVPNTKILADEETIIQVLTNLLSNSVKFSHAGTKVEIY 886

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
               + + I +VK+ G  +P    +++F RF  V  +   Q+ G GLGL+I ++ +  H 
Sbjct: 887 VTMGDKEIIVAVKDYGKGVPPHKLETIFERFEQVDVSDSRQKGGTGLGLAICKNIVQKHQ 946

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + + S  +  +T    +P +
Sbjct: 947 GKIWVESILDSGSTFYFTLPQQ 968



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 47/301 (15%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRD-----QAGDILW-ANISYKKNTETEGIVFQKAIGE 239
             L      F  +F S    +           G +L   N S+   T    +       +
Sbjct: 484 TALKESQDKFAKIFHSSPDPILIHQIITKILQGCVLLDVNASFLNFTGYSEVELIGYSFD 543

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETV---STLEHGNNKSYKI----VRVLNSFGEAGIA 292
           +  L     ++ ++      + +   +      + G  K+  +    + + N      I 
Sbjct: 544 NLSLVSNPEQELLLKEQLKNQGYVRNLEFDWLTKSGEVKTSLVSCESIVIDNKNSVISII 603

Query: 293 IDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLA 347
            D++     E  +            N    +A+   N Y    NR+  ++   D    L 
Sbjct: 604 KDITDRKKAEENLRQSEERFRTAFENAGSGMALVSLNGYFIRVNRALCQMLGYDSRDLLT 663

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI---- 403
            N +     E L          ++    + +     + +  K   H  +G+ + V+    
Sbjct: 664 KNVTELITGEEL--------PKDFDLAYQFLSGQITNYQVEKSCLH-KSGKIIWVLLNVS 714

Query: 404 ----VTSNPRGGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVA 448
               V  NP    IW  ++++ + ++E            +  T +      ++ L+ G+ 
Sbjct: 715 LLCDVNGNPL-HFIWQIQDISERHEVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGIL 773

Query: 449 V 449
           V
Sbjct: 774 V 774


>gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 587

 Score =  319 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ + +LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNA-LKRVSVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 595

 Score =  319 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 177/416 (42%), Gaps = 27/416 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  +               T   I+T +  G     F  +  ++       N   + 
Sbjct: 198 RITAPLRKMRQAAFEVARGKFDTKVPILTHDEIGELAMAFNQMGRRLQFNINALNQEKEQ 257

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  DG I ++NP        +      G     IA           
Sbjct: 258 LASILSSMADGVITFNRDGEILITNPPAERF--LQAWYFEQGNDAEIIAPL------PPQ 309

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +LF  ++   +++ +S++ +L+  +  +L   + PL +   +   V V   +  ER L
Sbjct: 310 VNELFIRVVR--EEKEQSIELSLQGRTWVIL---MTPLYDKTNVRGAVAVLRDMTEERRL 364

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+++  F+ +VS+ELR+P+  + G+++ +    + + + ++ +  + I  
Sbjct: 365 ----------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDD-IAATDEEKKEMAKVIYD 413

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  LVND+LDLA ++AG + LNY T+ L   +  + +       E  I +    D 
Sbjct: 414 ESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDN 473

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  R+ Q+ + ++ NA+  + +  TV + A ++ G     V+++G+ IPE+  
Sbjct: 474 EDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDL 533

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             VF RF        R   G GLGL+I ++ +  H G +S+ S     TT    +P
Sbjct: 534 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589



 Score = 41.1 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 83/270 (30%), Gaps = 40/270 (14%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +N +      IL ++   +  F+++  +   N       +   A+     ++ E++   
Sbjct: 250 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ---AWYFEQGNDAEIIA-- 304

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWM 415
                LP Q+N     E    V +  +       L  G+T  +++T         G + +
Sbjct: 305 ----PLPPQVN-----ELFIRVVREEKEQSIELSLQ-GRTWVILMTPLYDKTNVRGAVAV 354

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             ++T +  L+            +  T + +     + + + +A    + +        +
Sbjct: 355 LRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAATDEEKK-----EMAK 409

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRY----YNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            ++            + ++A   + +    Y           II  F    K  Q  L  
Sbjct: 410 VIYDESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSA 469

Query: 521 -LSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              +  +   + P    Q +   ++     
Sbjct: 470 EFDNEDIRIRMDPDRIEQVLTNLIDNAIRH 499


>gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
 gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
          Length = 571

 Score =  319 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 218 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 264

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 265 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 321

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L++ ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 322 NHEWKGIV----LVFHDITELKRLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 377

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  +L ++   +  K
Sbjct: 378 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMETVDMKGILEDIHMVLDNK 436

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 437 AGEKEISLQVNV-LKRVSVIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 495

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 496 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 555

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 556 EGTTFTVVLPK 566



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 193 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 250

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 251 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 296

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 297 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKRLEQMRKDFL 349


>gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126]
          Length = 773

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 102/483 (21%), Positives = 195/483 (40%), Gaps = 21/483 (4%)

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLA-FLATNPSNDELLEFLRSANKLPEQL--NWKTWK 375
           +A  D N  +   N    +L    +   +  N S  ++                  +TW+
Sbjct: 17  VATMDVNGKILSANDKCSQLSGFSIDEIIGENISAFDITNMSEQEKSDIFVSLSQGQTWQ 76

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             + S+ K  E     W++     + VI +       I +  +++ Q  LET+ +     
Sbjct: 77  GEVHSLTKLGEP----WYVF-ATLVPVIKSPPRVDHLIAIATDISEQKRLETRLSEGRAF 131

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI------AATCSR 489
                D + EGV     +G  +  NPA   L     + L        +           R
Sbjct: 132 YRSITDSIGEGVYAVNGEGTTQFLNPAASRLLGWSLDELQGRRFHDTVHYQKGDGTLLPR 191

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                +         TS++D     +G L  +S   +            +  F +++   
Sbjct: 192 EQCPVNLTIRSGQSYTSYEDFFTDKRGRLFPISIVAVPLLDKEGKPDGHVGVFNDISGQK 251

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E+ L +  +  + A++ K+ F+  +S+E+R+P+  IIG T L   S   + N ++ QY
Sbjct: 252 AIEQKLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHLALES---TDNEQRQQY 308

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E +  SST LL+L+N ILD + V+A  +++      L   ++++ Q    K  +  +++
Sbjct: 309 LEKVQRSSTALLDLMNSILDFSKVEADKIEIVDEPFTLTKTIDKLAQVFQVKAQQKQLQL 368

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
                         D +++ Q+   +LSNA+ F++ G  +IL   +      FSV + G 
Sbjct: 369 LFDIRCHTNLQCRGDSEKIYQVLLNLLSNAIKFTASGH-IILTVEKRENQLAFSVSDTGM 427

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E +   +F  FV        +  G GLGL+I +  + L GG +++ S  +  +  + 
Sbjct: 428 GISEHVKSKLFKAFVQADASISREYGGTGLGLAICKRLVELMGGDLTLESEVDKGSCFSF 487

Query: 787 RIP 789
            +P
Sbjct: 488 ALP 490



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 82/254 (32%), Gaps = 29/254 (11%)

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFC 263
            D  G IL AN    K ++  G    + IGE+   F      E+ K  +  S +  + + 
Sbjct: 20  MDVNGKILSAN---DKCSQLSGFSIDEIIGENISAFDITNMSEQEKSDIFVSLSQGQTWQ 76

Query: 264 ETVSTLEHGNNKSYK-------IVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEIL 312
             V +L       Y        I           IA D+S++  +  +L+        I 
Sbjct: 77  GEVHSLTKLGEPWYVFATLVPVIKSPPRVDHLIAIATDISEQKRLETRLSEGRAFYRSIT 136

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            ++   +   +     QF N +   L    L  L     +D +         LP +    
Sbjct: 137 DSIGEGVYAVNGEGTTQFLNPAASRLLGWSLDELQGRRFHDTVHYQKGDGTLLPREQCPV 196

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDL 425
                     +S  +++D +    G+   + + + P         G + +F +++ Q  +
Sbjct: 197 NL---TIRSGQSYTSYEDFFTDKRGRLFPISIVAVPLLDKEGKPDGHVGVFNDISGQKAI 253

Query: 426 ETKYNTLVKVQGET 439
           E K           
Sbjct: 254 EQKLQKAYDEAQSA 267


>gi|183220306|ref|YP_001838302.1| two-component sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910423|ref|YP_001961978.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775099|gb|ABZ93400.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778728|gb|ABZ97026.1| Putative two-component sensor protein with CheY-like receiver
           domain [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 655

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 112/499 (22%), Positives = 212/499 (42%), Gaps = 39/499 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK---LPE 367
           IL     A+ + D   ++   N +   ++         + + D L        +   + +
Sbjct: 14  ILQYFYDAVIVIDLKFHITSWNLAAERIYGYKAEEALGSSTIDVLKTIFAEGEREKSIAQ 73

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-------PRGGTIWMFENLT 420
              +  W+  +F             H  +G  L +   ++          G I +  ++T
Sbjct: 74  LQAYGIWQGEVFQ------------HKKDGTKLKIRSAASFLKDKEGATIGVIAINRDIT 121

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  ++       +    + ++   GV +   DG+    N   +S+    E  L      
Sbjct: 122 EENRIQENLAESEERFRMSFENAGIGVCLLDLDGKFLRVNKKIQSMLGYSEVELIGRPSK 181

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDER----KSLQGTLELLSDSVLEYSIIPLPNA 536
                     +++     L    +    ++R     +    +E+ +  V + +  PL   
Sbjct: 182 EFAYKEDQSIFHQYRESALKGKDVDVVYEKRYVSKTNQILWIEISNSLVKDRNGSPLY-- 239

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             ++ F ++TD   AE  L +  +   +A++ K+ FV ++S+E+R+PL  +IGF +LL T
Sbjct: 240 -FVVHFNDITDRKNAEIHLIQAKKEAERANQAKSDFVANMSHEIRTPLNGVIGFNELLMT 298

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +L+S Q +YV+   +S+  LL ++NDILD++ ++AG + LN +   L  ++ +   
Sbjct: 299 T---NLDSDQKEYVKNAISSAHGLLGIINDILDISKIEAGKLVLNETISNLKHIVKDSLG 355

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LK 711
            +  +  E NI++    + KL    V D  RL QI   +L NA+ F+ KGS ++      
Sbjct: 356 VLQWRAKEKNIQLDFEVNPKLPEWIVVDATRLRQILINLLGNAVKFTEKGSVILKIDSEI 415

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           A  +     FS+K+ G  IPE    ++F  F        RR  G GLGL I +S ++L G
Sbjct: 416 AENEKIKLNFSIKDTGIGIPESHKPNLFQSFWQGESNSTRRFGGTGLGLRITKSLLDLMG 475

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +  SS +   T     I
Sbjct: 476 GQIDFSSEEGKGTEFRFSI 494



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 19/176 (10%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELW 339
            + G   I  D+++E  + + L  + E       N  + + + D +      N+    + 
Sbjct: 109 ATIGVIAINRDITEENRIQENLAESEERFRMSFENAGIGVCLLDLDGKFLRVNKKIQSML 168

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 L   PS        +      +Q  +  ++E+          ++  +     Q 
Sbjct: 169 GYSEVELIGRPS--------KEFAYKEDQSIFHQYRESALKGKDVDVVYEKRYVSKTNQI 220

Query: 400 LHVIVTSN---PRGGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           L + ++++    R G+    +  F ++T + + E       K         S+ VA
Sbjct: 221 LWIEISNSLVKDRNGSPLYFVVHFNDITDRKNAEIHLIQAKKEAERANQAKSDFVA 276


>gi|146309325|ref|YP_001189790.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
 gi|145577526|gb|ABP87058.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
          Length = 1291

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 118/644 (18%), Positives = 236/644 (36%), Gaps = 49/644 (7%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTETEG 230
            GI S+++E     + L    S F+ L  +L  +V+    D    + + +   +       
Sbjct: 665  GIASDISELLQTTRALQKSESRFRGLVANLPGVVYRCANDSQWSMRYVSDEIRNLCGYPA 724

Query: 231  IVFQKAIGESRK--LFKEEIKKRMISSSALEKNFCETVS-TLEHGNNKSYKIVRVLNSF- 286
              F      S    +  +++     +  A+E+     ++  L H +  +  +        
Sbjct: 725  SDFIDNRVRSFSSIVHPDDLAITFRAGEAIERQESFELTYRLRHADGHNVWVREKGRGEY 784

Query: 287  -------GEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
                      G   D+S+   + D+L           +     +A+   +      N   
Sbjct: 785  DGQGHLLWVDGFIWDISERQAMEDELRLSQQRFLNAFNTAPQGMALVGPDGRWLEANDEL 844

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL- 394
              +            S +ELL         P+ L+            + +    +  +L 
Sbjct: 845  CRMLGY---------SREELLACTYQQVTHPDDLDADRQNMEDLLAGRINAYQMEKRYLD 895

Query: 395  PNGQTLHVIVT----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
              G+ L V+++     +  G     +   ++ + +V  E             +D++ + +
Sbjct: 896  KQGRILWVLLSVSLVRDSEGRPVHFVSQIQDFSDRVAAERAVREREHYLSTLLDNVLDAI 955

Query: 448  AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                  GRI+  N A  +++   ++ ++ G ++R +     R  ++              
Sbjct: 956  VTIDEQGRIETFNHAAEAIFGYRQSEVA-GHNVRLLMPEPYRSAHDGYIQRYLRTGEAWV 1014

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
              + + L+G  +      +E ++  + +         + D    +R            + 
Sbjct: 1015 IGQARELEGMRQNGERFAMELAVSQISHQGQRRFIAVIRDIAERKR-----------IEL 1063

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +KN FV  VS+ELR+PLT I G   L+    LG++     Q +    ++S  L  L+ND+
Sbjct: 1064 MKNEFVSTVSHELRTPLTAIAGSLGLINGGALGAVPDNMRQMLAIAHSNSQRLSALINDL 1123

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD+  + AG M  +     L  LL +          ++ + +++  +        D QRL
Sbjct: 1124 LDMDKLVAGKMHFDLQARTLQPLLEQALLHNQPYAEQHQVELRLQVEDD-AQVRVDAQRL 1182

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             Q+ + +LSNA  FS  G+ V ++          SV ++G  IPE     +F++F     
Sbjct: 1183 AQVMANLLSNAAKFSPPGTCVDVRLQHGGEVLRVSVTDSGPGIPEAFKPRIFSKFSQADS 1242

Query: 748  --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                Q+ G GLGL+I +  I   GGH+   SS     T    +P
Sbjct: 1243 GDTRQQGGTGLGLAICKEIIERMGGHIGFDSSPGQGATFWFELP 1286



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 72/501 (14%), Positives = 153/501 (30%), Gaps = 50/501 (9%)

Query: 51   LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTI--VWDGKDETPEIIGQLHQRIDIPQT 108
            +A  ++E       +    S++  L+     +      D +     +  ++      P +
Sbjct: 666  IASDISELLQTTRALQKSESRFRGLVANLPGVVYRCANDSQWSMRYVSDEIRNLCGYPAS 725

Query: 109  D---TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAF 165
            D     + SF + +         +A E + +  +SF+L    +       +G        
Sbjct: 726  DFIDNRVRSFSSIVHPDDLAITFRAGEAI-ERQESFELTYRLR-----HADGHNVWVREK 779

Query: 166  LR--------ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
             R        +L +DG   +++E      +L      F   F++    +      G  L 
Sbjct: 780  GRGEYDGQGHLLWVDGFIWDISERQAMEDELRLSQQRFLNAFNTAPQGMALVGPDGRWLE 839

Query: 218  ANI--------------SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
            AN               +      T              L    I    +    L+K   
Sbjct: 840  ANDELCRMLGYSREELLACTYQQVTHPDDLDADRQNMEDLLAGRINAYQMEKRYLDKQGR 899

Query: 264  E-----TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
                  +VS +     +    V  +  F +      V+ E  V ++  +   +L N+  A
Sbjct: 900  ILWVLLSVSLVRDSEGRPVHFVSQIQDFSD-----RVAAERAVREREHYLSTLLDNVLDA 954

Query: 319  IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
            I   D+   ++  N +   ++    + +A +     + E  RSA+    Q   +T +  +
Sbjct: 955  IVTIDEQGRIETFNHAAEAIFGYRQSEVAGHNVRLLMPEPYRSAHDGYIQRYLRTGEAWV 1014

Query: 379  FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
                +  E  +        +     ++   +   I +  ++  +  +E   N  V     
Sbjct: 1015 IGQARELEGMRQNGERFAMELAVSQISHQGQRRFIAVIRDIAERKRIELMKNEFVSTVSH 1074

Query: 439  TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             +      +A     G + L N            ++    H    +   S   N+    D
Sbjct: 1075 ELRTPLTAIA-----GSLGLINGGALGAVPDNMRQMLAIAHSN--SQRLSALINDLLDMD 1127

Query: 499  LFAAIITSFDDERKSLQGTLE 519
               A    FD + ++LQ  LE
Sbjct: 1128 KLVAGKMHFDLQARTLQPLLE 1148



 Score = 38.0 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 47/388 (12%), Positives = 96/388 (24%), Gaps = 43/388 (11%)

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRV----LNSFGEAGIAIDVSKEITVNDQLTHT 308
            +     K F            + +         L +     I     +E  V     + 
Sbjct: 486 TAVRVAGKPFGTLAFANPEPRRRPFDAADRDFLGLFARWVGAILERQQQERAVRAARAYL 545

Query: 309 YEILHNLTVAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
             +L +    ++I   D +  +   N     L     A +    +   +        +  
Sbjct: 546 QAVLDS-ATGVSIIATDTSGTISLFNSGAERLLGYGAAEMIGRQTPAIIHLEEEVQARAA 604

Query: 367 EQLNWKTWKENIFSVY----KSSETHKDTW--HLPNGQTLHVIVTSNPR-------GGTI 413
           E           F V+    +  E     W     +G    V +T +          G +
Sbjct: 605 ELSEASGHAVEGFEVFVHNARGGEPETRQWTYRHKDGGLRQVNLTVSAIFDENGQITGFL 664

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA---VFGPDGRIKLSNPAFRSLWKTE 470
            +  +++  +                + +L  GV           ++  +   R+L    
Sbjct: 665 GIASDISELLQTTRALQKSESRFRGLVANLP-GVVYRCANDSQWSMRYVSDEIRNLCGYP 723

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            +       I N   + S   +  D    F A       E   L   L       +    
Sbjct: 724 ASDF-----IDNRVRSFSSIVHPDDLAITFRAGEAIERQESFELTYRLRHADGHNVWVRE 778

Query: 531 IPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                 + Q  L +V+      +ER   E    L +       F+   +       T   
Sbjct: 779 KGRGEYDGQGHLLWVDGFIWDISERQAMEDELRLSQQ-----RFLNAFN-------TAPQ 826

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           G   +    +    N +  + + Y    
Sbjct: 827 GMALVGPDGRWLEANDELCRMLGYSREE 854


>gi|307316590|ref|ZP_07596033.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306897788|gb|EFN28531.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 917

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 171/383 (44%), Gaps = 17/383 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE +     +     ++ +S+G  ++  + RI ++N  +  ++ + +     G   
Sbjct: 271 EKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLRGRSF 330

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT------LELLSDSVLEYSIIPLP 534
           R I         E    DL       + DER  L          +   D  +  S   +P
Sbjct: 331 REIVEQNL----EMGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGDKWVRISKRKIP 386

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  T+  + ++T+  + +  L         A+E K+ F+  +S+ELR+PL  IIG++++L
Sbjct: 387 DGGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSEML 446

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                   + +    ++ I+++   LL+L+NDILDL+ ++A  M++   T  + DLL +V
Sbjct: 447 IEEARDHEDEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDV 506

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++A  M  N   +    +  LG   +D+ +L Q    +LSNA  F+  G  V L+  R
Sbjct: 507 AATVAPLMARNGNELTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFT-NGGRVTLRVRR 565

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               D    +F V + G  +  +  + +FN F        R   G GLGLSI  SF  + 
Sbjct: 566 EQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMI 625

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG V++ S     +     +P++
Sbjct: 626 GGVVTVESEVGKGSVFTIEVPAQ 648



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 9/155 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     Q       L  ++    ++D    +   N  + E++           S  E++E
Sbjct: 276 EDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVE 335

Query: 358 F-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             L       E  + + W +    +++      D     + + + +     P GGT+ ++
Sbjct: 336 QNLEMGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGD-KWVRISKRKIPDGGTVAVY 394

Query: 417 ENLTV----QVDLET---KYNTLVKVQGETIDHLS 444
            ++T     QV+LE       +  + +   +  +S
Sbjct: 395 TDITELKQRQVELERAKSHAESANEAKSRFLASMS 429


>gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 558

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
 gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
          Length = 571

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 218 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 264

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 265 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 321

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 322 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 377

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 378 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 436

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 437 AGEKEISLQVNV-LKRVSVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 495

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 496 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 555

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 556 EGTTFTVVLPK 566



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 193 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 250

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 251 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 296

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 297 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 349


>gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1102

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 112/520 (21%), Positives = 205/520 (39%), Gaps = 31/520 (5%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           A+ +     +  +L  + E L        + +  ++        +R   +++ ID     
Sbjct: 170 ALKLPSTALLAQELQRSKERLDFALDAGQIGVWEWNLKTDTLLWDRRTRQIFNIDPE--- 226

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
               +  L +F +  +  PE  N  T +       ++    K      +G   +V     
Sbjct: 227 --VRDLYLTDFTQCLH--PEDRNEVTNQLEQCIQTRTPYNSKFRVVHSDGSIRYVHAQGR 282

Query: 408 PRGGT-------IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
              G        I +  + T +   E            T + ++ G+A    DGR    N
Sbjct: 283 AFLGNDGEPEQYIGVCHDFTDKQLQEDALAESELNFRSTFEQVAMGIAHVALDGRWLRVN 342

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTL 518
                ++  +   L     I +++          +   + A  I S+  E++ L   G+ 
Sbjct: 343 QRLCEIFDYQAEELLE-LRIHDLSHPDELEIVLKNMQRMQAGEIKSYSIEKRYLRKDGSS 401

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +  V             +    N+      E+ L        +A + K+ F+ ++S+
Sbjct: 402 IWTNLMVSLVRHQSGEPKHFIFGIKNIQRRKETEQKLKAAKLTAEEASQTKSEFLANMSH 461

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  +IG T+LL+ +    LN  Q ++V+   +S   LLNL+NDILD + ++AG +
Sbjct: 462 ELRTPLNGVIGMTELLQGTH---LNQHQQEFVDACRSSGESLLNLINDILDFSKIEAGKL 518

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSN 697
            L+     L ++L +   ++  + +E N+ +    D +   +   D  RL QI   ++ N
Sbjct: 519 DLDLHEFDLENVLMDTVSTLVWRTNEKNLELPCFVDPESRLTLKGDSYRLRQILVNLIGN 578

Query: 698 AMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           A+ F+  G  V      +R+NG+    FSV + G  I E     +F  F        R  
Sbjct: 579 AIKFTDSGEVVVRTRTVSRENGNIRIHFSVTDTGIGISESKINRLFQSFSQVDASTTRNY 638

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL I ++ + L GG + I S D   +T    IP +
Sbjct: 639 GGTGLGLVISQNLVELMGGRIGIESQDGVGSTFWFEIPFE 678


>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1175

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 101/542 (18%), Positives = 202/542 (37%), Gaps = 59/542 (10%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           I   +  E  +         +L ++   +            NR+  + +    + +A   
Sbjct: 123 ILRRLQAEEQLRTSRESHRMLLDSIETQVWHLTDEHTYGAVNRAHADFFGFSPSEIANR- 181

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTSNPR 409
             D+ L         PE +     K N     +  + H + W    +G+   + +T  P+
Sbjct: 182 DIDQFL---------PEGMVAAIRKGNREVFSRKEQIHIEEWVSNASGEPRLLSITKTPK 232

Query: 410 -------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNP 461
                     +   E++T Q     K     +     ++++ + V     PD R    +P
Sbjct: 233 IDEQGNVDYVVCSAEDMTAQWKATEKLKVSEEKLSSILNNMKDVVWSISWPDLRHLYLSP 292

Query: 462 AFRSLWKTEENRLSPGTHI-RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           +   L+    +       + +++     R+  +     L        +       G++  
Sbjct: 293 SSEKLYGISAHEFYENPTLFKDVTHPEDRHLTKKAVEQLLEEGEAVRECRIIRPDGSIVW 352

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           ++D+           A+      +VT+ V+A + L +  E   +A   K+ F+ ++S+E+
Sbjct: 353 INDTSKMIYDDNQQPARVDGVTRDVTELVKARQDLIQAKEHAEEATRAKSDFLANMSHEI 412

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  +IG T LL  +    L+S+Q  Y   + +S+  LL ++NDILD + ++AG + +
Sbjct: 413 RTPMNGVIGMTGLLLDT---DLDSEQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDI 469

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
                 L  +L +    +A K  E  + +    D  + S V  D  RL QI   ++ NA+
Sbjct: 470 ETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAV 529

Query: 700 DFSSKGSTVILKAARDN--------------------------------GDFIFSVKNNG 727
            F+  G  V ++ ++                                   +  F +++ G
Sbjct: 530 KFTEHGE-VEIRVSKSEVVDQRSEVSDQPANRLSHEQTGIKDQYGDSRIVELCFQIRDTG 588

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP+D   S+F  F        R   G GLGL+I      + GG   + S ++  +T  
Sbjct: 589 IGIPQDKQDSLFESFSQVDASTTRKFGGTGLGLAISRQLAEMMGGTAGLESVEDQGSTFW 648

Query: 786 CR 787
             
Sbjct: 649 FT 650



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 90/287 (31%), Gaps = 35/287 (12%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++       ++L       ++L DS++  VWH          N ++             A
Sbjct: 122 QILRRLQAEEQLRTSRESHRMLLDSIETQVWHLTDEHTYGAVNRAHADFFGFSPSEI--A 179

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-----HGNNKSYKIVRVL------NS 285
             +  +   E +   +   +    +  E +   E      G  +   I +        N 
Sbjct: 180 NRDIDQFLPEGMVAAIRKGNREVFSRKEQIHIEEWVSNASGEPRLLSITKTPKIDEQGNV 239

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAI-AIFDQNRYLQFHNRSFVELWE 340
                 A D++ +    ++L  + E    IL+N+   + +I   +    + + S  +L+ 
Sbjct: 240 DYVVCSAEDMTAQWKATEKLKVSEEKLSSILNNMKDVVWSISWPDLRHLYLSPSSEKLYG 299

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQT 399
           I       NP+             +    +    K+ +  + +  E  ++     P+G  
Sbjct: 300 ISAHEFYENPTLF---------KDVTHPEDRHLTKKAVEQLLEEGEAVRECRIIRPDGSI 350

Query: 400 LHVIVTS------NPRGGTI-WMFENLTVQVDLETKYNTLVKVQGET 439
           + +  TS      N +   +  +  ++T  V          +   E 
Sbjct: 351 VWINDTSKMIYDDNQQPARVDGVTRDVTELVKARQDLIQAKEHAEEA 397


>gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 812

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 105/501 (20%), Positives = 187/501 (37%), Gaps = 34/501 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +L +L V I   D+   L + N+ + E     LA L      D            
Sbjct: 20  QFLQSLLEHLPVFIYRKDREGRLTYANQRYCERRGQPLAALLGQTDFD---------LSP 70

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--TLHVIVTSNPR-----GGTIWMFEN 418
           PE          I    +      +   LP+G+   +H+I            GT  M+ +
Sbjct: 71  PELAQTHAADNLIVMQTRRPLEKDELQVLPSGEKSWIHIIKVPIIDADGEVVGTQGMYWD 130

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T +  +E        +    ++H+ + V       R +  + +    +   +     G 
Sbjct: 131 ITDRKAVEEALAHERDLLSGLLEHIDDHVYFKDRASRFRRISTSLARKFGLRDPAAVVGK 190

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
              +     +R + E    D  A I T      K  + +    +++    + +PL N   
Sbjct: 191 TDFDF---FTREHAEPAFADEQAIIRTGEPIVGKIERESWSGNTETWGLTTKVPLRNRAG 247

Query: 537 ---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               T     +VT   R E+ L     A   A   K+ F+ ++S+E+R+P+  +IG T L
Sbjct: 248 EIIGTCGITKDVTALKRTEQQLQAAKLAAEAAARAKSEFLANMSHEIRTPMNGVIGMTGL 307

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +K   L+ +Q Q+ E +  S+  L+ ++NDILD + ++AG +        L + +  
Sbjct: 308 LLDTK---LDPEQRQFAESVRNSAENLMTVINDILDFSKIEAGKLLFEELDFDLVETIEG 364

Query: 654 VKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
               +A +     I +   I+         D  RL QI + +L NA+ F+  G  V+   
Sbjct: 365 TLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGRLRQILTNLLGNAIKFTEHGEVVLSTT 424

Query: 713 ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                       F V + G  I  D+   +F  F        RR  G GLGL+I +  + 
Sbjct: 425 LERETATHAIVRFDVTDTGIGISRDVQARLFQSFEQADSSTTRRYGGTGLGLAISKQLVA 484

Query: 767 LHGGHVSISSSDEGVTTINCR 787
           +  G + + S     +T    
Sbjct: 485 MMHGEIGVQSEAGVGSTFWFT 505



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 116/381 (30%), Gaps = 32/381 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           + A T L     +      + L + L   ++ +D+ G + +AN  Y +            
Sbjct: 4   DPAGTPLPTGSATASEQFLQSLLEHLPVFIYRKDREGRLTYANQRYCERRGQPLAALLGQ 63

Query: 237 IG---ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFG 287
                   +L +      +I          + +  L  G      I++V          G
Sbjct: 64  TDFDLSPPELAQTHAADNLIVMQTRRPLEKDELQVLPSGEKSWIHIIKVPIIDADGEVVG 123

Query: 288 EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             G+  D++    V + L H  +    +L ++   +   D+    +  + S    + +  
Sbjct: 124 TQGMYWDITDRKAVEEALAHERDLLSGLLEHIDDHVYFKDRASRFRRISTSLARKFGLRD 183

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                  ++ +      +     ++       E I    +      +T        + + 
Sbjct: 184 PAAVVGKTDFDFFTREHAEPAFADEQAIIRTGEPIVGKIERESWSGNTETWGLTTKVPLR 243

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ-------GETIDHLSEGV-----AVFG 451
             +    GT  + +++T     E +                E + ++S  +      V G
Sbjct: 244 NRAGEIIGTCGITKDVTALKRTEQQLQAAKLAAEAAARAKSEFLANMSHEIRTPMNGVIG 303

Query: 452 PDGRIKLS------NPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNESDGWDLFAAII 504
             G +  +           S+  + EN ++    I + +   + +   E   +DL   I 
Sbjct: 304 MTGLLLDTKLDPEQRQFAESVRNSAENLMTVINDILDFSKIEAGKLLFEELDFDLVETIE 363

Query: 505 TSFDDERKSLQGTLELLSDSV 525
            + D   +  QG    L D +
Sbjct: 364 GTLDMLAERAQGKGIELIDGI 384


>gi|71907402|ref|YP_284989.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847023|gb|AAZ46519.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1169

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 136/809 (16%), Positives = 283/809 (34%), Gaps = 74/809 (9%)

Query: 28  GTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQL----SKYHSLLTENNCLT 83
             I  +L  + +   LL++      +K  +  + ++    QL        + L     + 
Sbjct: 152 AIILTLLTVSRLVQDLLVKNATKAEQKARDMAADIACKNQQLKESQDALDATLAAIPDIL 211

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
              D       I       +   + +    +  + L       + +A  + +++G+S+  
Sbjct: 212 FEMDEIGTYLAIRTNDEHLLAASKNELMGRTVSDVLPPQAAAVVHQALAEAKRQGKSY-- 269

Query: 144 VAETQNDCAIK---IEGRVSGSCAFLR--ILSLDGIYSELAETTLKCK-KLSNHISVFKV 197
                    IK    +G      +  R     ++G    +    +  + +          
Sbjct: 270 ------GRVIKLPLAQGDAWFELSVARKDRTDMEGSRFIVISRDITSRHRAEEEAQRLSQ 323

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS--- 254
           + +     +   D    I++AN ++K      G   ++AIG                   
Sbjct: 324 VIEQSPESIVITDLKTHIIYANSAFKD---ASGYTVEEAIGRPAAFLGSGRTPAATKDVM 380

Query: 255 --SSALEKNFC-ETVSTLEHGNNKSYKIVRVLNSFGE------AGIAIDVSKEITVNDQL 305
             +    K +  E ++  + G++   +++                I  D++       ++
Sbjct: 381 WFTLEQGKVWQGEFINRRKDGSDYLEQVIISPLRDSSGEVTHYVAIKRDITTLRQQEQEI 440

Query: 306 THTYEILHN-------------LTVAIAIFDQNRYLQFHNRSFVELWE--IDLAFLATNP 350
               + L N             +     I D         RS  E  +  ++  F   +P
Sbjct: 441 ARDRKRLINVLSGTGAGPWEWDIDSGKLILDGASS-NLVGRSLAEFGDDHLEAWFSRIHP 499

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
            +  +LE   + +   +   ++       +        +  W    G+ +       P  
Sbjct: 500 EDRLVLEKSLADHLAGDSERFEIEYRIQHA------DQRWVWIQVRGKVIDWSKDRKPL- 552

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
               +  ++T     E +   L  +    I+ + EG +V+    R+   N  +R L+   
Sbjct: 553 TMYGVHLDITAHKQAEEQRQYLESILHSAIEAIGEGFSVYNAADRLTWCNEQYRRLYTIS 612

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSD-SVLEY 528
                PG     I      +    +   +  A +       R+S    ++ L+D   L+ 
Sbjct: 613 APAFVPGNSFEEIIRYGIEHGQYPEAQANPEAWVQRRLLAHRQSESNFIQKLADGRWLDV 672

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                 +   +   V++T+       L    +A   A+  K+ F+  +S+E+R+P+ +I+
Sbjct: 673 RERKTADGSIVGFRVDITE-------LMHAKQAAEAANRAKSEFLATMSHEIRTPMNSIL 725

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   +L    +   + +   Y   I  S   LL ++ND+LDLA V++G ++L+ +  +  
Sbjct: 726 GMAQILCGPDVS--DPRSRDYGRVILESGKTLLTILNDVLDLAKVESGRVELDPTPWLPQ 783

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L  ++            + I    DG     ++AD  RL Q+ S ++SNA+ F++ GS 
Sbjct: 784 QLAQDILALFRGVAQGKGLIISAEWDGPRTQEYLADGYRLKQMLSNLVSNALKFTAIGSV 843

Query: 708 -VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            + +       D     FSV + G  I  +  + +F  F        RR  G GLGLSIV
Sbjct: 844 DIRISEIDRTNDFATLEFSVTDTGIGISSEKQQGLFQPFTQADGSTTRRYGGSGLGLSIV 903

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
                L GG   + S ++  + +  RIP+
Sbjct: 904 RHLAELMGGEAGLESEEKKGSRLWFRIPA 932


>gi|121602141|ref|YP_988756.1| putative non-motile and phage-resistance protein [Bartonella
           bacilliformis KC583]
 gi|120614318|gb|ABM44919.1| putative non-motile and phage-resistance protein [Bartonella
           bacilliformis KC583]
          Length = 773

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 106/458 (23%), Positives = 201/458 (43%), Gaps = 34/458 (7%)

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQV 423
            +N+    + + S  K            +G  + + + +          + +  +++ Q 
Sbjct: 316 DINFFDLAQELMSGEKKHIDINVPMRHADGHHVWMRIRAEVTEEEEPHLVGISFDISEQH 375

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
               +         + I+++SE   ++  +GR+ +SN  F       +  L  G     +
Sbjct: 376 QFVEQTAQADLRIRDAIENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIQRATV 435

Query: 484 AATCSR-----YYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDSVLE----- 527
            A         +  E DG     +I  + D      +ER++  G L  +   + E     
Sbjct: 436 TAMARPAISEYFLKEDDGTGNLTSIRQTADGFWLKINERRTQDGGLVCIGTDISELKQQQ 495

Query: 528 ----------YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                     +S I              T+  +  ++L  + E    A++ K+ F+ ++S
Sbjct: 496 EKFEDSERRLFSFIQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANIS 555

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAG 636
           +ELR+PL  I+GF+D++  S  G L S++  +Y+  I  S T LL L+NDILD++ ++AG
Sbjct: 556 HELRTPLNAILGFSDIMLQSTFGPLGSQRYEEYMRDIHNSGTHLLTLINDILDMSKIEAG 615

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
              L+   + L  +++E  +++  +  E  I I      KL + + D + + QIF  ++S
Sbjct: 616 RFTLDCKNVDLEPIISEAIRTLTPQAQEKKISITANIAPKLHAEL-DCRAMRQIFLNLIS 674

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
           NA+ F+  G ++ + A +   + IF +K+ G  IP+   K +   F    +       G 
Sbjct: 675 NAVKFTPSGGSIDICAFQKKNNLIFKIKDTGVGIPQSAIKKLGKPFEQVENQFTKTHTGS 734

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I  S + LH G + I+S +E  TT+   IP K+
Sbjct: 735 GLGLAISRSLLELHKGKLEIASEEENGTTVTITIPIKQ 772



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 86/285 (30%), Gaps = 34/285 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
             +   +   +  +    +++ +      D+ +     +G I W+   Y    E  G V 
Sbjct: 247 TRARNTDLISEKIQNRIDMAMMRGRCGLWDWNM----ASGRIYWSRAMY----EMLGYVP 298

Query: 234 QKA---IGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-----HGNNKSYKI---VRV 282
           Q A   I +   +           +  L     + +          G++   +I   V  
Sbjct: 299 QDALLSISQITAIINSTDINFFDLAQELMSGEKKHIDINVPMRHADGHHVWMRIRAEVTE 358

Query: 283 LNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
                  GI+ D+S++    +Q         + + N++ +  ++D    L   N  F E 
Sbjct: 359 EEEPHLVGISFDISEQHQFVEQTAQADLRIRDAIENISESFVLWDSEGRLVMSNSKFCEY 418

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             I    L +      +    R     P    +   +++      S           +G 
Sbjct: 419 AAIPKQMLQSGIQRATVTAMAR-----PAISEYFLKEDDGTGNLTS------IRQTADGF 467

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            L +       GG + +  +++     + K+    +     I  L
Sbjct: 468 WLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQEL 512


>gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
 gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
          Length = 545

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 192 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 238

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 239 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 295

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 296 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 351

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 352 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 410

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 411 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 469

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 470 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 529

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 530 EGTTFTVVLPK 540



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 167 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 224

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 225 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 270

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 271 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 323


>gi|126656209|ref|ZP_01727593.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
 gi|126622489|gb|EAZ93195.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
          Length = 1565

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 133/655 (20%), Positives = 249/655 (38%), Gaps = 54/655 (8%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
             +    +  ++ E       L+  +S    LFDS    +   D  G ++ +N S+ +   
Sbjct: 921  FIEYQSVGRDIQELKEAEALLAEEVSRSNTLFDSSIDGIVVIDHQGYVIRSNASFSRMLG 980

Query: 228  TEGIVFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
                   K      +  +  E  ++ I+ S L K+  ET    + G+    +I      +
Sbjct: 981  YTPEETAKLHLRDWEANYTPEEIEQKIAESDLCKDIFETRHRRKDGSIYDVEISATPVRW 1040

Query: 287  G----EAGIAIDVSKEITVNDQLTHTYEILHNLTVAI-------AIF-DQNRYLQFHNRS 334
            G    +  I  D+S        L  +     NL V +        I+ D +    + +  
Sbjct: 1041 GNEIVQLCICRDISDRKEAEAALLRSEARYQNLVVTVPGVIYDYVIYPDGSERFAYISPR 1100

Query: 335  FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              EL E +   L            +   + LP  L  K +  +    + +         L
Sbjct: 1101 CRELLETEPDIL--KRDFSVFWGMVHPQD-LPIILQSKEYSLDNNECFSTEIRII----L 1153

Query: 395  PNGQTLHVIVTSNP------RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            P+GQ   +  TS P       GG  W  +  +++ +  +E       +      ++   G
Sbjct: 1154 PSGQIKWIKKTSQPSSKPQADGGRRWSGIMIDISDRKRIELALEESEERFRSAFENAGIG 1213

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            + +   +G     N AF  +    E  L      + I        +      L +  I +
Sbjct: 1214 MVLISLEGEFLKVNQAFCGMLGYSEQELLLKN-FQEITHPDDLTMSNKGLQQLSSGQIKT 1272

Query: 507  FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            +  E++ +  +  ++       +I  + +      +         ER          + D
Sbjct: 1273 YQMEKRYIVASGSII---WCSVTISSIKDQDQHPLYFVTQVQDITERR---------ELD 1320

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             +K  F+  VS+ELR+PLT++ G   LL +  L          ++ +  +   L+ LVND
Sbjct: 1321 RLKTEFISVVSHELRTPLTSMRGALGLLDSGVLREEPETVEHMLQIVLRNCDRLIRLVND 1380

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            IL+L  +++G ++L      ++ LL +  ++++    E +I I++ S        A    
Sbjct: 1381 ILNLERLESGKVQLIKEACEVDHLLTDAVETVSAMAMEASINIELTS--ISAHVWASYDA 1438

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAA---------RDNGDFIFSVKNNGSSIPEDMCKS 737
            ++QI + +LSNA+ F+ +G+TV L A          R     +FSVK+ G  IP +   +
Sbjct: 1439 IIQILTNLLSNAIKFAPEGTTVWLTAQLFDDPDSTDRATSFVLFSVKDQGRGIPTNKLTT 1498

Query: 738  VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F RF         Q+ G GLGL+I +S I  H G + + S     +T    +P 
Sbjct: 1499 IFGRFQQVDASDARQKAGTGLGLAICQSIIQQHNGRIWVDSILGEGSTFYFTLPL 1553



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/444 (14%), Positives = 143/444 (32%), Gaps = 70/444 (15%)

Query: 164  AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS-LDFLVWHRDQAGDILWANISY 222
              +R+  +        +      +    +          L          G  L+ N +Y
Sbjct: 799  HLVRVTDITERKQAQIKLQKSEARYRGIVQDQTEFISRFLP--------DGTTLFVNEAY 850

Query: 223  KK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
             +      ++  G  +Q  I E  +   E++++++ S S            + +G  +  
Sbjct: 851  CRYFSINASDIIGKNYQPVIYEPDQ---EQVREQVNSLSKENPITLIENRIVVNGEIRWT 907

Query: 278  K-IVRVLNSFGE-----AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
            + I R+L            +  D+ +    E  + ++++ +  +  +    I + D   Y
Sbjct: 908  QWINRMLFDEQGNFIEYQSVGRDIQELKEAEALLAEEVSRSNTLFDSSIDGIVVIDHQGY 967

Query: 328  LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            +   N SF  +        A     D        AN  PE++  K  + ++       + 
Sbjct: 968  VIRSNASFSRMLGYTPEETAKLHLRDW------EANYTPEEIEQKIAESDLC-----KDI 1016

Query: 388  HKDTWHLPNGQTLHVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             +      +G    V +++ P         + +  +++ + + E             +  
Sbjct: 1017 FETRHRRKDGSIYDVEISATPVRWGNEIVQLCICRDISDRKEAEAALLRSEARYQNLVVT 1076

Query: 443  LSEGVA---VFGPDG--RIKLSNPAFRSLWKTEENRLSP-------GTHIRNIAATCSRY 490
            +  GV    V  PDG  R    +P  R L +TE + L           H +++       
Sbjct: 1077 VP-GVIYDYVIYPDGSERFAYISPRCRELLETEPDILKRDFSVFWGMVHPQDLPIILQSK 1135

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFVNVTDS 548
                D  + F+  I           G ++ +  +  + S  P  +         ++++D 
Sbjct: 1136 EYSLDNNECFSTEIRIILP-----SGQIKWIKKTS-QPSSKPQADGGRRWSGIMIDISDR 1189

Query: 549  VRAERALTEKNEALRKADEIKNSF 572
             R E AL E  E        +++F
Sbjct: 1190 KRIELALEESEE------RFRSAF 1207



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 15/241 (6%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQF-HNRSFVELWEID 342
             G++ID+S    +  +L    +    I  N + AI + D    L    N   VEL+E+ 
Sbjct: 673 VTGVSIDISDRKQIESELQQQKDLRESIFENSSDAIFLVDPQSSLIIDCNHRLVELFEVV 732

Query: 343 LAFLATNPSNDELLEFLRSANKLPE---QLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 +     L + L +  ++ E   Q+  K + E        +    + W    G  
Sbjct: 733 CKDDLIDIEWHTLQKQLFTDEEVEEIITQIEVKGFWEKEIEYI--TFKGHEFW----GNL 786

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
              ++  N +   +    ++T +   + K           +   +E ++ F PDG     
Sbjct: 787 TAKLIIVNNQIIHLVRVTDITERKQAQIKLQKSEARYRGIVQDQTEFISRFLPDGTTLFV 846

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N A+   +    + +    +   I         E          IT  ++ R  + G + 
Sbjct: 847 NEAYCRYFSINASDIIGKNYQPVIYEPDQEQVREQVNSLSKENPITLIEN-RIVVNGEIR 905

Query: 520 L 520
            
Sbjct: 906 W 906



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 48/428 (11%), Positives = 132/428 (30%), Gaps = 48/428 (11%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ-AGDILWANISYKKNTETEGIVFQKAIG 238
                   L      F  +F      +       G IL  N  + + +            
Sbjct: 425 SLRRTETALKASQKKFTTIFRMSPDPIMINYCENGRILEVNDRFIEFSGYSYDELTGHTP 484

Query: 239 ESRKLFKEEIKKRMISSSALEKNF---CETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-- 293
               LF    + R       +  F    E    ++ G  K+  +    +   +    I  
Sbjct: 485 LELNLFPNVQQHRNFQELLQKIGFTYSQEIAFRVKSGEVKTVLLSAENHCIEQQEYIIVT 544

Query: 294 --DVSKEITVNDQLTHTYEILHNLTV-------AIAIFDQNRYLQFHNRS--FVELWEID 342
             D+++   +   L  + + L+ +         +  +FD ++  +++ +S   + L+   
Sbjct: 545 FRDITESKQLELALKDSRKKLNQILDNTFASIFSFRLFD-DQTWEYNYQSIGSLILFGYT 603

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLN------WKTWKENIFSVYKSSETHKDTWHLPN 396
              +  +       + L ++  +PE         ++ +K       +    HK+      
Sbjct: 604 PQEIMAD-------QGLWASRIVPEDHETIILPLFERFKTEDTITVEYRFRHKNDSIRWI 656

Query: 397 GQTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-G 454
             T                +  +++ +  +E++      ++    ++ S+ + +  P   
Sbjct: 657 ATTYTSYRDPTIDAWIVTGVSIDISDRKQIESELQQQKDLRESIFENSSDAIFLVDPQSS 716

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            I   N     L++     +     + +I         +    +    IIT  +  +   
Sbjct: 717 LIIDCNHRLVELFE-----VVCKDDLIDI--EWHTLQKQLFTDEEVEEIITQIE-VKGFW 768

Query: 515 QGTLELLSDSVLEY-----SIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKADE 567
           +  +E ++    E+     + + + N Q +      ++T+  +A+  L +     R   +
Sbjct: 769 EKEIEYITFKGHEFWGNLTAKLIIVNNQIIHLVRVTDITERKQAQIKLQKSEARYRGIVQ 828

Query: 568 IKNSFVQH 575
            +  F+  
Sbjct: 829 DQTEFISR 836



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 52/468 (11%), Positives = 147/468 (31%), Gaps = 69/468 (14%)

Query: 49   NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
             S+ + + E     + + +++S+ ++L   +    +V D +           + +     
Sbjct: 925  QSVGRDIQELKEAEALLAEEVSRSNTLFDSSIDGIVVIDHQGYVIRSNASFSRMLGYTPE 984

Query: 109  DTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI 168
            +T  L   +W   +   ++ +   +       F+     ++     +E     +      
Sbjct: 985  ETAKLHLRDWEANYTPEEIEQKIAESDLCKDIFETRHRRKDGSIYDVE---ISATPVRWG 1041

Query: 169  LSLDGI--YSELAETTLKCKKLSNHISVFKVLFDSLDFLVW----HRDQAGDILWANISY 222
              +  +    ++++       L    + ++ L  ++  +++    + D +    + +   
Sbjct: 1042 NEIVQLCICRDISDRKEAEAALLRSEARYQNLVVTVPGVIYDYVIYPDGSERFAYISPRC 1101

Query: 223  KKNTETEGIVFQKAIG-----ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
            ++  ETE  + ++           +     ++ +  S    E    E    L  G  K  
Sbjct: 1102 RELLETEPDILKRDFSVFWGMVHPQDLPIILQSKEYSLDNNECFSTEIRIILPSGQIKWI 1161

Query: 278  KIVRVLNSFGEA-------GIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNR 326
            K     +S  +A       GI ID+S     E+ + +          N  + + +     
Sbjct: 1162 KKTSQPSSKPQADGGRRWSGIMIDISDRKRIELALEESEERFRSAFENAGIGMVLISLEG 1221

Query: 327  YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
                 N++F  +       L          E     +        +         Y+   
Sbjct: 1222 EFLKVNQAFCGMLGYSEQELLLK----NFQEITHPDDLTMSNKGLQQLSSGQIKTYQM-- 1275

Query: 387  THKDTWHLPNGQTLHVIVT--------SNPRGGTIWMFENLTVQVDLET----------- 427
              +  + + +G  +   VT         +P    +   +++T + +L+            
Sbjct: 1276 --EKRYIVASGSIIWCSVTISSIKDQDQHPL-YFVTQVQDITERRELDRLKTEFISVVSH 1332

Query: 428  KYNT---------------LVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +  T               +++ + ET++H+ + + +   D  I+L N
Sbjct: 1333 ELRTPLTSMRGALGLLDSGVLREEPETVEHMLQ-IVLRNCDRLIRLVN 1379


>gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 375

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 101/365 (27%), Positives = 164/365 (44%), Gaps = 7/365 (1%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +   E ++   + + +    G I L N     L+      L  G  I  +     R +
Sbjct: 5   AEEQFRELLEAAPDAMVIVNQAGEIVLVNSQTEKLFGFAREELL-GRPIEILIPQRFRGH 63

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT---FVNVTDS 548
           + S     F             L G  +  ++  +E S+ PL   + +L      + TD 
Sbjct: 64  HPSHRDGYFGDPHVRPMGASMDLYGLRKDGTEFPVEISLSPLRTPEGLLVTSAIRDTTDR 123

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R ER+L EKN  L +A++ K+ F+  +S+ELR+PL  IIGF + L   K G +N KQ +
Sbjct: 124 KRIERSLQEKNAELERANQAKDRFLASMSHELRTPLNGIIGFAEFLADGKPGPVNGKQKE 183

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+E I      LL+L+ND+LDL  V AG ++L+ +T  + D + EV   +        I 
Sbjct: 184 YLEDILNGGRHLLHLINDMLDLVKVQAGKLELHLATFRIEDAIEEVCAGVRPLADNKRIG 243

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNG 727
           + V           D QR  Q+   +LSNA+ F+  G  V +K  +     F  SV++ G
Sbjct: 244 VHVEIAPGFSPITHDEQRFKQVLYNLLSNAIKFTDDGGQVEVKVEQRGADRFCLSVRDTG 303

Query: 728 SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +  + +F  F      H  +  G GLGL++    + L GG +S+ S+    +T +
Sbjct: 304 IGIKPEDIQRLFVEFEQLETGHARRFGGTGLGLALTRKIVELKGGTISVESAVGRGSTFS 363

Query: 786 CRIPS 790
             +P 
Sbjct: 364 VTLPL 368



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 72/244 (29%), Gaps = 30/244 (12%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                  E+L     A+ I +Q   +   N    +L+      L   P    + +  R  
Sbjct: 4   KAEEQFRELLEAAPDAMVIVNQAGEIVLVNSQTEKLFGFAREELLGRPIEILIPQRFRGH 63

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGGTIWM-FE 417
           +  P   +      ++  +  S + +       +G    V ++      P G  +     
Sbjct: 64  H--PSHRDGYFGDPHVRPMGASMDLYG---LRKDGTEFPVEISLSPLRTPEGLLVTSAIR 118

Query: 418 NLTVQVDLETKYNT-------LVKVQGETIDHLSE----------GVAVFGPDGRIKLSN 460
           + T +  +E              + +   +  +S           G A F  DG+    N
Sbjct: 119 DTTDRKRIERSLQEKNAELERANQAKDRFLASMSHELRTPLNGIIGFAEFLADGKPGPVN 178

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              +      E+ L+ G H+ ++            G           +D  + +   +  
Sbjct: 179 GKQKEYL---EDILNGGRHLLHLINDMLDLVKVQAGKLELHLATFRIEDAIEEVCAGVRP 235

Query: 521 LSDS 524
           L+D+
Sbjct: 236 LADN 239


>gi|256424548|ref|YP_003125201.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256039456|gb|ACU63000.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 1203

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 146/811 (18%), Positives = 292/811 (36%), Gaps = 76/811 (9%)

Query: 35  LTTIIPIILLIRQRNSLAKKVNETYSFLSE----------ICDQLSKYHSLLTENNCLTI 84
              +   I+L  +   L        S L+E             ++  +  L   +  L  
Sbjct: 124 GFLLGAFIVLHTEPARLTSNEQTALSILAEKISDTIQTNRRRQEMHYFTRLFDLSEGLVC 183

Query: 85  VWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ--SFD 142
           + D      +        +  P+ D   +S  + +         K   K+ +     SF 
Sbjct: 184 ITDFSGRLWQFNKAFTTVLGWPEADLQTMSALDLVHPDDTASTGKELAKMGEGASTISFT 243

Query: 143 LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
               T       I+   +       I ++     ++   TLK + L    +  +  F++ 
Sbjct: 244 HRVRTAEGDYRLIQWVATPEPHTGNIFAMG---RDITSETLKEQALIESETNARTFFENS 300

Query: 203 DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
             ++   D  G I + N +   +         +      +L  ++    +       +  
Sbjct: 301 LGMMCRHDLDGHITYVNKASADSVGYSIEELLQM--NLYQLIPQQYHADLDQYLINIRI- 357

Query: 263 CETVSTLEHGNNK-------SYKIVRVLNSFGEA---GIAIDVSKEITVNDQLTHTYEIL 312
              ++ L H  +K        +  V + +  G A   G A D+++   +   L  T E+L
Sbjct: 358 KGKITGLMHTQHKKGHIRIWLFNNVLINDGKGSAYVIGNAADITERHELETDLKRTKELL 417

Query: 313 HNLTVAIAI-----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              T  +A       D        +    E+ E+   F  T  +      +      L  
Sbjct: 418 ER-TNQVARIGGWEVDLGTQQLHWSTVTCEIHEVPEDFNLTPDNAMSF--YTGDNRIL-- 472

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTV 421
            L+    +          E    TW    G+ L V    +              F+++  
Sbjct: 473 -LDAVVEQAITNGSPWQIELQITTWR---GRKLWVRSIGHAEFEDGVCKRLYGTFQDIDE 528

Query: 422 QVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTE---------E 471
           +   +       ++  + ++  SE  +     +G I L N     L   +          
Sbjct: 529 KKKADLAIQQSRQLLEDVLESASEVSIIATDHEGIITLFNKGAERLLGYKAGEVTGKESW 588

Query: 472 NRLSPGTHIRNIAATCSRYYNES-DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
             L     I N +   S    +  +G+++F  +      ER+      +  S  ++   +
Sbjct: 589 TILHAEEEIMNRSIELSALSGQHIEGFEVFTYVPELEGSERREWTYIRKDGSQIIISMVV 648

Query: 531 IPLPN----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            P+ +       +   V++T+  +AER L E       A + K+ F+ ++S+E+R+PL  
Sbjct: 649 TPIRDNAVITGYLGIAVDITERKKAERDLKEAKIQAEYASKAKSEFLANMSHEIRTPLNG 708

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +IGFTDL+  +   +LN  Q QYV  ++ S+  LL+++NDILD + ++AG ++L+ S   
Sbjct: 709 VIGFTDLVLKT---ALNETQQQYVAIVNQSANSLLSIINDILDFSKIEAGKIELDISKCD 765

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           + +  ++    ++ +  +  + + +    +L     AD  RL QI   +LSNA+ F+ KG
Sbjct: 766 IYEFSSQASDILSFQAQQKGLEMLLNVSPELPRFMWADIVRLKQILLNLLSNAVKFTEKG 825

Query: 706 STVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLG 757
             + L+               F V++ G  I ++  + +F  F+           G GLG
Sbjct: 826 E-IELEIKPIAYPSVGMTTIRFEVRDTGIGIRKNKQEKIFEAFLQEDISTTKRYGGTGLG 884

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LSI    + L G  + + S+    +T    +
Sbjct: 885 LSISNKLLALMGSKLQLESTTGKGSTFFFDL 915


>gi|302878541|ref|YP_003847105.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581330|gb|ADL55341.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1115

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 218/551 (39%), Gaps = 41/551 (7%)

Query: 266 VSTLEHGNNKSYKIVRVLN------SFGEAGIAIDVSKEI-TVNDQLTHTYEILHNLTVA 318
           ++ LE      + ++ +L         G       V     TV +  +    +L ++   
Sbjct: 308 IAVLERDRRNMFFLISLLGCTLILIGGGLIYYFRSVRDAKHTVEESESRLRLLLESVNGG 367

Query: 319 IAIFDQNRYL-QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           I     N  +  F N +  ++       L     +  +       +  P+  +++     
Sbjct: 368 IWGQSLNGGICTFINAAGAKMLGYQPDELLGQSLHSLV------HHTYPDGAHYEAEICP 421

Query: 378 IFSVYKSSETHK---DTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETK 428
           + +        K   +     +G ++ V  +++P        GT+ +FE++T +  +E +
Sbjct: 422 MHATSLDGIPRKINNEVLWRRDGTSIAVEYSTHPMYRDGRIEGTVVVFEDITERQRMERQ 481

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                 V    I    +G      +G +   N A+        + L          +   
Sbjct: 482 MQERDAVYSAAIKTSVDGFWTVDLEGYLLEVNDAYVQASGYTRDELLSMR-----VSQLE 536

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
              +E+D       I     DE +S   T    + D  +  S  P+   +      ++T+
Sbjct: 537 VIDSEADVETRIEKIRREGSDEFESRHRTKAGRIWDVSVAVSYAPIAGGRLFCFVKDITE 596

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +  + L    E    A+  K+ F+ ++S+E+R+P+  +IGF++L            Q 
Sbjct: 597 RKQQAKLLEAAREKAESANRAKSDFLANMSHEIRTPMNAVIGFSELALD---DPNPVSQR 653

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +++ I  SS  LL ++NDILD + +++  M L    + L++LL +V++    +  E  +
Sbjct: 654 AHLQQIIESSRSLLGILNDILDFSKIESRQMTLEMEVLNLDELLGQVRRMFVMQAKERTL 713

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
            + V  +  + + +  D  RL QI + +L NA+ F+++G+  +    ++   +N    F 
Sbjct: 714 DLVVAREAGVPNILTGDPLRLRQILTNLLGNAIKFTNQGAVSLNVRAIQTNSENVTLDFC 773

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK++G  +      S+F  FV   +   RR  G GLGL+I  +   L  G + + S    
Sbjct: 774 VKDSGIGMSAAQLASLFQPFVQADNSITRRFGGTGLGLTISRNLARLMDGDIRVDSVAGT 833

Query: 781 VTTIN--CRIP 789
            +  +    +P
Sbjct: 834 GSEFHFEVTLP 844



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 27/203 (13%)

Query: 121 FHHYIKLSKATEKL------RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
             H   L     K+      R++G S  +   T     +  +GR+ G+            
Sbjct: 421 PMHATSLDGIPRKINNEVLWRRDGTSIAVEYST---HPMYRDGRIEGTVVVF-------- 469

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
             ++ E     +++    +V+     +     W  D  G +L  N +Y + +        
Sbjct: 470 -EDITERQRMERQMQERDAVYSAAIKTSVDGFWTVDLEGYLLEVNDAYVQASGYTRDELL 528

Query: 235 KAIGESRKLFKEEIK--KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG-- 290
                  ++   E     R+        +  E+    + G  + + +   ++    AG  
Sbjct: 529 SMRVSQLEVIDSEADVETRIEKIRREGSDEFESRHRTKAG--RIWDVSVAVSYAPIAGGR 586

Query: 291 ---IAIDVSKEITVNDQLTHTYE 310
                 D+++       L    E
Sbjct: 587 LFCFVKDITERKQQAKLLEAARE 609


>gi|209523453|ref|ZP_03272008.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209496195|gb|EDZ96495.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 655

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 128/652 (19%), Positives = 241/652 (36%), Gaps = 58/652 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-----------Y 222
           +  E+A+     + L     + + L +++  LV  +D  G  L AN +           Y
Sbjct: 23  LKQEIADRLRVEEALRASSELLQTLINAIPDLVCFKDSQGRWLEANQAVLDLLQLNKIDY 82

Query: 223 KKNTETEGIVFQKAIGE----SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           +  T+ E     K +         L   + K              E +     G  + Y 
Sbjct: 83  RGKTDAEIFDIIKHVNALSCYQEILLDSQCKDEKAWQLQKVYQEEEKIRQ-NDGILRIYD 141

Query: 279 IVRVLN------SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           +++V          G   +  D++ +            ++ +   AI     +  +   N
Sbjct: 142 VMKVPLFTATGVRKGLVILGRDITAKKQAEADYIRLASMVESSEDAIIGNTLDGIIISWN 201

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
               +++    +    +P          S   LPE+ N         +     + ++   
Sbjct: 202 EGAKQIYGYSASQAIGSPI---------SMLALPERPNEMPRILTSITAEGGIDHYETIH 252

Query: 393 HLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              +G  + V +T +P         G   +  +++ +  +E     L       +D   E
Sbjct: 253 VRQDGANIDVSLTISPIKDALGQITGISMIARDISYRKRIECTLEQLRHQNELILDSAGE 312

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA--I 503
           G+     DG+I   NPA   +   +   L      +     C          D      I
Sbjct: 313 GICGLNQDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPI 372

Query: 504 ITSFDDE--RKSLQGTLELLSDSVL--EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             + +D   R  + G       ++L  EY   P+     ++  V     +   +A+    
Sbjct: 373 FATLEDGKVRHVIDGVFWRKDGTILPVEYVSTPMRQEGAIIGAVITFKDITERQAM---- 428

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                 +++K+ F+  VS+ELR+PLT+I G   LL +  L S   K  + ++    +   
Sbjct: 429 ------EKMKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPEKSQRMLDIAMFNCDR 482

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ LVNDILDL  + +G + ++   + L DL+ +    +     +  + + VI       
Sbjct: 483 LMRLVNDILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAEKAGVDLCVI--PLEFK 540

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + DR R++Q+ + +LSN++ FS     +   A     D + SV++ G  IP D  +++F
Sbjct: 541 VMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENDVLISVRDRGRGIPPDKIETIF 600

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  +   Q  G GLGL+I  S +  HGG +   S     +T    +P
Sbjct: 601 GRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGAGSTFFVSLP 652


>gi|172038471|ref|YP_001804972.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
 gi|171699925|gb|ACB52906.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
          Length = 1680

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 144/784 (18%), Positives = 293/784 (37%), Gaps = 75/784 (9%)

Query: 49   NSLAKKVNETYSFLSEICDQLSKYHSLLTEN-------NCLTIVWDGKDETPEIIGQLHQ 101
             S+ + + E     + + +++S+ ++L   +       N    V    +    ++G+  +
Sbjct: 925  QSVGRDIQELKEAEALLAEEVSRSNALFESSLDGIVVLNQQGYVVLANESFARMLGRTPE 984

Query: 102  RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG 161
                       L   +W       ++ +           F+     ++     +E     
Sbjct: 985  ETAR-------LHLRDWEAQFTREEIEQKITNSELCDDIFETRHRRKDGSIYDVE---IS 1034

Query: 162  SCAFLRILSLDGIY--SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            +        +  +    ++++       L+  +S    LF+S    +   +Q G ++  N
Sbjct: 1035 ATPVRWGSEIVQLCICRDISDRKQAETLLAEEVSRSNALFESSRDGIVILNQQGFVIRGN 1094

Query: 220  ISYKKNT--ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
             S+ K      E I     I    +L +EE+++++  +S   + F ET    ++G+    
Sbjct: 1095 ASFAKMLGYPPEEITSLHVIDWEAQLTEEEVQQKIAQTSWSSQTF-ETRHRRKNGSIYDV 1153

Query: 278  KIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFD------QN 325
            +I     ++G       I  D+S        L H+     NL V +   I+D       +
Sbjct: 1154 EISANPLNWGGETVLLCICRDISDRKEAEAALRHSEARYQNLVVTVPGVIYDYVIYPNGS 1213

Query: 326  RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
                + +    EL E +   L            +   +    Q + ++  EN        
Sbjct: 1214 ERFVYMSPRCRELLETEPDMLIQ--DFSVFWRMVHPQDLSLIQQSKESALENNERFLTEI 1271

Query: 386  ETHKDTWHLPNGQTLHVIVT------SNPRGGTIW--MFENLTVQVDLETKYNTLVKVQG 437
                    LP+G+   + +T       +  GG  W  M  +++ +   E       +   
Sbjct: 1272 RLV-----LPSGRIKWIKITSQPTPNPHADGGKRWSGMMVDISDRKGAELALRDSEERFR 1326

Query: 438  ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
               +    G+ +   +G+    N AF  +    E  L      + I        +     
Sbjct: 1327 SAFESAGVGMVLVSLNGQFLKVNQAFCEMLGYSEEELLLKN-FQEITYPEDLAMSLEGFK 1385

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             L +    ++  E++ +  +  ++    L  S+I   + + +     V D          
Sbjct: 1386 QLVSGQSKTYQTEKRYISASGSII-WGFLTVSVIQDQDERPLYFVTQVQDITERR----- 1439

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                  + D +K  F+  VS+ELR+PLT++ G   LL    L          ++ +  + 
Sbjct: 1440 ------ELDRLKTEFISVVSHELRTPLTSMRGALGLLNAGVLQEEPETVEHMLKIVLRNC 1493

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              L+ LVNDILDL  +++G ++L      +++LL +  ++I+    E +I I++ S    
Sbjct: 1494 DRLIRLVNDILDLERLESGKVRLIKEVCQVDNLLTDAVETISAMATEASITIELTS--IS 1551

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------ARDNGDFIFSVKNNGS 728
                A    ++Q  + +LSNA+ FS++G+ + L A         A+     +FSVK+ G 
Sbjct: 1552 AYVWASHDAIIQTLTNLLSNAIKFSTEGTKICLTAKLFNDPDSTAQTPSFVLFSVKDQGR 1611

Query: 729  SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             IP +  +++F RF         Q+ G GLGL+I +S I  H G + + S     +T   
Sbjct: 1612 GIPTNKLQTIFGRFQQVDASDARQKGGTGLGLAICQSIIQQHNGRIWVDSILGEGSTFYF 1671

Query: 787  RIPS 790
             +P 
Sbjct: 1672 TVPL 1675



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/419 (12%), Positives = 129/419 (30%), Gaps = 53/419 (12%)

Query: 163  CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS-LDFLVWHRDQAGDILWANIS 221
               +R+  +      +        +    +          L          G IL+ N +
Sbjct: 798  LHLVRVTDITERKQAVISLQDSEARYRAIVQDQTEFISRFLP--------DGTILFINEA 849

Query: 222  Y-----KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            Y        +E  G  +Q  I E  +   E++ +++ S S            + +G  + 
Sbjct: 850  YCRYFDVNASEVIGTTYQPVIFEPDR---EQVMEQVNSLSKENPITIIENRVIVNGQIRW 906

Query: 277  YKIV------RVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNR 326
             + +         N      +  D+ +    E  + ++++ +  +  +    I + +Q  
Sbjct: 907  TQWINHILFDEQGNFIEYQSVGRDIQELKEAEALLAEEVSRSNALFESSLDGIVVLNQQG 966

Query: 327  YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            Y+   N SF  +        A     D   +F R      E++  K     +       +
Sbjct: 967  YVVLANESFARMLGRTPEETARLHLRDWEAQFTR------EEIEQKITNSELCD-----D 1015

Query: 387  THKDTWHLPNGQTLHVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
              +      +G    V +++ P         + +  +++ +   ET     V       +
Sbjct: 1016 IFETRHRRKDGSIYDVEISATPVRWGSEIVQLCICRDISDRKQAETLLAEEVSRSNALFE 1075

Query: 442  HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
               +G+ +    G +   N +F  +       ++    I   A        +      ++
Sbjct: 1076 SSRDGIVILNQQGFVIRGNASFAKMLGYPPEEITSLHVIDWEAQLTEEEVQQKIAQTSWS 1135

Query: 502  AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTE 557
            +   +F+   +   G++       +E S  PL        +    +++D   AE AL  
Sbjct: 1136 S--QTFETRHRRKNGSIYD-----VEISANPLNWGGETVLLCICRDISDRKEAEAALRH 1187



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 103/314 (32%), Gaps = 30/314 (9%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV- 282
           +    +G+   + + E R      + +R  +   +   +        +G+ +        
Sbjct: 606 EIMADQGLWMSRVVPEDRDTIILPLFERFATEGTITVEYRFRHK---NGSIRWISTTYTS 662

Query: 283 -----LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF-HN 332
                ++++   G++ID+S     E+ +  Q      I  N + AI + D    L    N
Sbjct: 663 YRDSSIDAWNVTGVSIDISDRKQIELALEQQKDLRESIFENSSDAIFLVDPQSLLIIDCN 722

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           R  VEL+E D        S D+L+  +       +    +  K  +  +       ++  
Sbjct: 723 RRVVELFEAD--------SKDDLIG-IEGHTLQKQPFTEEEIKAIVAQMEAKGFWEREIE 773

Query: 393 HLP-NGQTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           ++   GQ     + + P G       +    ++T +                 +   +E 
Sbjct: 774 YITFKGQEFWGNLAAKPIGVGNQILHLVRVTDITERKQAVISLQDSEARYRAIVQDQTEF 833

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           ++ F PDG I   N A+   +    + +  GT  + +     R         L      +
Sbjct: 834 ISRFLPDGTILFINEAYCRYFDVNASEV-IGTTYQPVIFEPDREQVMEQVNSLSKENPIT 892

Query: 507 FDDERKSLQGTLEL 520
             + R  + G +  
Sbjct: 893 IIENRVIVNGQIRW 906



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 85/276 (30%), Gaps = 23/276 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAI-FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           E  +         I       I I +  +  +   N  F+E        L  +       
Sbjct: 430 ETALQASQKKFTTIFRMSPDPIVISYWPDGRILEVNDRFIEFSGYSREELTDHTPL---- 485

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRGG 411
                 N  P    ++ ++E +  +  +  + + T  L +G+   V++++       +  
Sbjct: 486 ----ELNVFPNAQQYRNFQELLKRIGFA-YSQEITLRLKSGEVRTVLLSAENHSIEQQEY 540

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA---VFGPDGRIKLSNPAFRSL-- 466
            I    ++T    LE       K   + +D+    +    VF  D     +  +  SL  
Sbjct: 541 IIATIRDVTQSKQLELALKDSRKKLNQILDNTFASIFSFRVFD-DQTWTYNYQSIGSLIL 599

Query: 467 --WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             +  +E     G  +  +                      + +   +   G++  +S +
Sbjct: 600 FGYTPQEIMADQGLWMSRVVPEDRDTIILPLFERFATEGTITVEYRFRHKNGSIRWISTT 659

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              Y    +         ++++D  + E AL ++ +
Sbjct: 660 YTSYRDSSIDAWNVTGVSIDISDRKQIELALEQQKD 695


>gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 595

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 177/416 (42%), Gaps = 27/416 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  +               T   I+T +  G     F  +  ++       N   + 
Sbjct: 198 RITAPLRKMRQAAFEVARGKFDTKVPILTHDEIGELAMAFNQMGRRLQFNINALNQEKEQ 257

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  DG I ++NP        +      G     IA           
Sbjct: 258 LASILSSMADGVITFNRDGEILITNPPAERF--LQAWYFEQGNDAEIIAPL------PPQ 309

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +LF  ++   +++ +S++ +L+  +  +L   + PL +   +   V V   +  ER L
Sbjct: 310 VNELFIRVVR--EEKEQSIELSLQGRTWVIL---MTPLYDKTNVRGAVAVLRDMTEERRL 364

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+++  F+ +VS+ELR+P+  + G+++ +    + + + ++ +  + I  
Sbjct: 365 ----------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDD-IAATDEEKKEMAKVIYD 413

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  LVND+LDLA ++AG + LNY T+ L   +  + +       E  I +    D 
Sbjct: 414 ESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDN 473

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  R+ Q+ + ++ NA+  + +  TV + A ++ G     V+++G+ IPE+  
Sbjct: 474 EDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDL 533

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             VF RF        R   G GLGL+I ++ +  H G +S+ S     TT    +P
Sbjct: 534 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589



 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 83/270 (30%), Gaps = 40/270 (14%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +N +      IL ++   +  F+++  +   N       +   A+     ++ E++   
Sbjct: 250 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ---AWYFEQGNDAEIIA-- 304

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWM 415
                LP Q+N     E    V +  +       L  G+T  +++T         G + +
Sbjct: 305 ----PLPPQVN-----ELFIRVVREEKEQSIELSLQ-GRTWVILMTPLYDKTNVRGAVAV 354

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             ++T +  L+            +  T + +     + + + +A    + +        +
Sbjct: 355 LRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAATDEEKK-----EMAK 409

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRY----YNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            ++            + ++A   + +    Y           II  F    K  Q  L  
Sbjct: 410 VIYDESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSA 469

Query: 521 -LSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              +  +   + P    Q +   ++     
Sbjct: 470 EFDNEDIRIRMDPDRIEQVLTNLIDNAIRH 499


>gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1007

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 97/513 (18%), Positives = 202/513 (39%), Gaps = 38/513 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           + +E  +         ++      + + D +  L   NR+ + + E D        S ++
Sbjct: 357 IQREKALAASERFLNTVIDTEPECVKLLDADCNLLMMNRAGLGIIEAD--------SFEQ 408

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNP----R 409
           +      +   P       ++E    V+   +   +   +   G+ + +   + P    +
Sbjct: 409 VQGQCVCSLIAP--PYQAAFRELTRQVFLGIQGRLEFEAIGLKGRHVWLETHAVPFHDDQ 466

Query: 410 GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G    +     N++ +   E              ++      +   D RI   N  F  +
Sbjct: 467 GNITSLLGVTRNISERKQFEQAIKAERDHFQALFENDGSAHVIVSSDRRIVKVNRQFCEM 526

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLELL 521
           +  +E  L   + +  I     ++Y+E         D        F   RK       + 
Sbjct: 527 FGYDEAELLGESTL--ILHVDQKHYDEWAPNFRQALDSKEHFSAEFPWRRKDTSIFWCVF 584

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +   LE       +   + T +++T   +AE+ L    EA   A+  K++F+ ++S+E+R
Sbjct: 585 NGVRLELVS---GDIVAVWTVIDITARKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIR 641

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  IIG T LL+T+    +  +Q  Y+E I  S+  L  L++DILDL+ +++G ++L 
Sbjct: 642 TPMNGIIGMTHLLQTTV---ITPEQEHYLENIENSANSLTTLISDILDLSKIESGKLELE 698

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMD 700
           YS   L   + E+  S   ++    + ++      +   +  D+ R  QI   ++ NA+ 
Sbjct: 699 YSDFSLRRCIRELLASQQFQIQHKELMVQTDIADNVPDILRGDQLRTRQILLNLIGNAIK 758

Query: 701 FSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGV 754
           F+ +GS  +  +      D      S+ + G  +       +F  F    +    +  G 
Sbjct: 759 FTEQGSIAITARLVAQQDDLALIRLSISDTGIGMSPQQVDRIFAPFEQADNSITRKYGGS 818

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL+I +  I L GG +   S++   ++ +  
Sbjct: 819 GLGLAICQRLIELMGGRIWAESTEGNGSSFHIE 851



 Score = 68.0 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 82/282 (29%), Gaps = 35/282 (12%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              + K L+        + D+    V   D   ++L  N +     E +   F++  G+ 
Sbjct: 356 LIQREKALAASERFLNTVIDTEPECVKLLDADCNLLMMNRAGLGIIEADS--FEQVQGQC 413

Query: 241 RKLFKEEIKKRMISSSALE-----KNFCETVSTLEHGNNKSYKIVRVLNSF------GEA 289
                    +        +     +   E  +    G +   +   V             
Sbjct: 414 VCSLIAPPYQAAFRELTRQVFLGIQGRLEFEAIGLKGRHVWLETHAVPFHDDQGNITSLL 473

Query: 290 GIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G+  ++S+    E  +  +  H   +  N   A  I   +R +   NR F E++  D A 
Sbjct: 474 GVTRNISERKQFEQAIKAERDHFQALFENDGSAHVIVSSDRRIVKVNRQFCEMFGYDEAE 533

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVI 403
           L    +    ++          Q ++  W  N      S E  + +  W   +      +
Sbjct: 534 LLGESTLILHVD----------QKHYDEWAPNFRQALDSKEHFSAEFPWRRKDTSIFWCV 583

Query: 404 VTS------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                    +     +W   ++T +   E +  +  +     
Sbjct: 584 FNGVRLELVSGDIVAVWTVIDITARKQAEQQLRSAKEAAEAA 625


>gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 449

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 178/427 (41%), Gaps = 28/427 (6%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDL-ETK 428
           +  + + + + +K  E     W    GQ   V   ++   G  +    +L  Q++  +  
Sbjct: 40  FGAFIKEVNNKFKLLEEFTSKWRQ--GQYSKVSYYNDKELGKIVDNVNHLIEQLENCKRA 97

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            N   K     +  +  GV V   DGR+ L N    +L+     +L+     + +     
Sbjct: 98  INEGEKRLTAILAGIKAGVMVLDRDGRVILVNKGLENLFG----KLNFTGEPKPLLEVIR 153

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTD 547
            Y  E    +  A +      +  + +    L +   +   + PL +        V V D
Sbjct: 154 NYELEKFLKEALANL------KEMTREIEFLLPNSKTILIHVTPLKDEHDQKVGLVAVFD 207

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          +++++ F+ +VS+ELR+PLT+I GF + L    L        
Sbjct: 208 DITEERKL----------EKMRSEFIANVSHELRTPLTSIKGFLETLLDGALEDKTI-AK 256

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +++ +++ +  L  L++D+L L+ ++A  +      ++L +L+ ++K    +++ E  +
Sbjct: 257 HFLQIMNSETERLTRLIDDLLSLSKIEAKKVDFAPKPLMLQELIQKMKLLFKSRLEEKEL 316

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
              +     L   +AD   + Q+   ++ NA+ ++  G  + + AA         VK+ G
Sbjct: 317 SFIISLPENLPLVLADGDMISQVLINLIDNAIKYTPAGGKIEVTAAVKGSWVEVVVKDTG 376

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPE+  K +F RF        R   G GLGL+IV+  I LH G V + S     +   
Sbjct: 377 IGIPEESQKRIFERFYRVDKARSRELGGTGLGLAIVKHIIELHNGKVWVKSKVGEGSAFG 436

Query: 786 CRIPSKE 792
             IP  +
Sbjct: 437 FTIPIAQ 443



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 28/164 (17%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +N+       IL  +   + + D++  +   N+    L+   L F        E++  
Sbjct: 96  RAINEGEKRLTAILAGIKAGVMVLDRDGRVILVNKGLENLFGK-LNFTGEPKPLLEVIRN 154

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTI 413
                 L E L       N+  + +  E     + LPN +T+ + VT          G +
Sbjct: 155 YELEKFLKEAL------ANLKEMTREIE-----FLLPNSKTILIHVTPLKDEHDQKVGLV 203

Query: 414 WMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
            +F+++T +  LE            +  T +      ++ L +G
Sbjct: 204 AVFDDITEERKLEKMRSEFIANVSHELRTPLTSIKGFLETLLDG 247


>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1768

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 118/661 (17%), Positives = 243/661 (36%), Gaps = 56/661 (8%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKN 225
            +  +     ++ E     K++ +  S F+ L  ++   V+     +   + + + +  + 
Sbjct: 617  LRQVAASIRDMTEELATAKRIKDSESRFRGLVGNIPGAVYRTRLGEQWVMEYVSDNIAEI 676

Query: 226  TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNNKSYK- 278
            T      F +           E  +    ++  +    +    ++       G+ +    
Sbjct: 677  TGYPAADFIENKKRVFASLILEADREATDTAINKGIAEQQSFEVQYRIQHRDGSLRWVHE 736

Query: 279  -----IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--------IFDQN 325
                      N+    G   DV++     +++  + + L  +T +I         I +  
Sbjct: 737  KGKASYDDEGNALWFDGSIQDVTQSKLAQEKIAQSQQQLETITESIPNTVYQLRWIANDQ 796

Query: 326  RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
            RY  F +R+ +         L  N   D + + +  + +       +       S  K  
Sbjct: 797  RYFTFLSRACITTLGFHRDQLLAN--FDLVADCIIESER---ARIIRALSGESASGLKWI 851

Query: 386  ETHKDTWHLPNGQTLHV--IVTSNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETID 441
            E  +        + L           G  +W     +++ +  ++ +            D
Sbjct: 852  EEFRYQHPTGEQRWLQAGARGDRQDDGSIVWNGYLMDISERKQMDRELAKREAHFRALFD 911

Query: 442  HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL------SPGTHIRNIAATCSRYYNESD 495
            +   G+      G I   N  F    +    RL            + + A  S  +   D
Sbjct: 912  NAGIGIVNVDDRGVILDCNEQFSQYLQLPIERLKGSLFFDYQDPEQGLEAKNSFKHLMGD 971

Query: 496  GWDLFAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            G D     I   +   E + +   +  LSD   EY    L  A       +++       
Sbjct: 972  GADSVKLEIRLLNQAGEARWMDVNMTGLSDKQGEYRSAVLSMA-------DISSLKLLSE 1024

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             LT+  +    A + K+ F+ ++S+E+R+P+  IIG + L   +   SL+ KQ  YVE I
Sbjct: 1025 ELTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQT---SLDKKQQNYVEKI 1081

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +S  LL ++NDILD + ++AG + +      L+ +L ++    + K  +  + +    
Sbjct: 1082 DRASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAV 1141

Query: 674  DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--FSVKNNGS 728
               +    V D  RL Q+   +++NA+ F+ +G  +  I +  R++ + +  FSV++NG 
Sbjct: 1142 APNIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVREDEEILLKFSVRDNGI 1201

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + E+    +F  F        R   G GLGL+I +  + L GG + + S     +T   
Sbjct: 1202 GLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFF 1261

Query: 787  R 787
             
Sbjct: 1262 S 1262



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 14/98 (14%)

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNP---RGGTIW----MFENLTVQVDLETKYNTLVKVQ 436
           S   H+      NG    + +   P     G +     +F ++T Q              
Sbjct: 461 SVPPHQVEMIAANGSVRRLDLFMQPLLSDNGELLSIEMLFNDVTEQFSAAA-------WS 513

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              ++   E + +    G++  SN   + L+  +  ++
Sbjct: 514 NAVLESAPEAMLIVDEQGQVVFSNSRCQQLFGYDAQQM 551


>gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium]
          Length = 1248

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 126/644 (19%), Positives = 249/644 (38%), Gaps = 57/644 (8%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGE--SRKLFK 245
           + H+    ++   +   V   D+ G I W N ++   T   E  V  + +GE  ++++  
Sbjct: 283 AEHLGRLALVASRISSGVAITDRHGTIEWINSAFVALTGWPEDKVLGRKLGELLAQEVSA 342

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHG----NNKS--YKIVRVLNSFGEAGIAI----DV 295
               + +    A    F  +      G             +++L+  G     +    D+
Sbjct: 343 PTTVRELEDHLARGVPFRLSYEAARQGGQLITRYWGEIDAIQMLDETGGRSQYVCLFNDI 402

Query: 296 SKEITVNDQLTHTYEILH----NLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNP 350
           +K            E L     NL V++ + D  N  +   NR     +++    +    
Sbjct: 403 TKRKAQEHVRDQEREFLEALLGNLPVSLFVLDPVNLNVVAINRYTEIEFKLQRDQVVGKS 462

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
               L E +    + P Q   +T +         + + +    + N +   +  ++    
Sbjct: 463 ITQALGESVLKLTEGPMQEALETGQTIEHDFEWQNASQQ---RIVNARHFALRHSNGRPR 519

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             I +  ++T     +       +   E ++ + +GV V                L+ + 
Sbjct: 520 LLISLVRDITSARQSQADLEESERRFRELVESMDDGVYVASEH--------RANYLYLSH 571

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLS-DSVLEY 528
             +   G    +I A  +R  +     D    A   + +D+ +     L L   D  L +
Sbjct: 572 RTQDLWGVSAEDIQAHPARLKSLVLPEDQHLLAEQEALEDQDQPTDTLLRLQHPDKGLRF 631

Query: 529 -----SIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                    LP+ Q+ +     +VTD       L    +    A + K+ F+ ++S+E+R
Sbjct: 632 LRHRTRARRLPDGQSRIYGLVSDVTDEHGQALELQRARDLAEAASQAKSQFMANMSHEIR 691

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+G T+LL  +    LN KQ ++ + +  S   LL ++NDILD A ++AG ++L 
Sbjct: 692 TPMNGILGMTELLLGT---PLNDKQRRFAQAVYRSGESLLEIINDILDFAKIEAGRLELA 748

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMD 700
               VL  L+ +  + +A + HE  + +       L S +  D  RL QI + +++NA+ 
Sbjct: 749 TCDFVLRTLVEDTLELMAPRAHEKGLELSFREQPGLPSVIHGDPLRLRQILTNLVANAIK 808

Query: 701 FSSKGSTVILKAARDNG-------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           F+  G  V+       G             +  F V++ G  IP ++   +F+ FV    
Sbjct: 809 FTEHGEIVVDIRRAIGGAVELPKPGSLETMELEFMVRDTGIGIPAEVVPRLFSAFVQANG 868

Query: 748 --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  G GLGL+I +  + L GG + ++S+    +    R+P
Sbjct: 869 GMARRYGGTGLGLAISKQLVELMGGQIEVNSAPGVGSEFLFRVP 912



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 127/368 (34%), Gaps = 38/368 (10%)

Query: 106 PQTDTDLLSFENWLK--------FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG 157
           PQ + +      WL          H    L++A +++   GQ+  L   ++    ++++G
Sbjct: 104 PQDNGEAQ---RWLALSQEIVEAAHGANSLAQALQRV---GQALHLQMGSRAWVCLRVDG 157

Query: 158 RVSGSCAFLRI-LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
             +G  A LR  ++ DG   ++ + T           + + L          R   G+  
Sbjct: 158 -WNGESALLRPWVNADGDAGDIIDVTAIATTHREERPLGQALSTLRP-----RAAQGE-- 209

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            A ++ +       +  +K +     +  E     ++     +++  E    L+      
Sbjct: 210 -AELAPQSTCPWRPVHTRKVLAVPVSV--EGWPLALLEFDDPQQDCAELSHVLD------ 260

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
              +  L     A    +++   T  + L     +   ++  +AI D++  +++ N +FV
Sbjct: 261 ---IAALQLGFVAQRDANLAHMATSAEHLGRLALVASRISSGVAITDRHGTIEWINSAFV 317

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD--TWHL 394
            L       +      + L + + +   + E  +           Y+++       T + 
Sbjct: 318 ALTGWPEDKVLGRKLGELLAQEVSAPTTVRELEDHLARGVPFRLSYEAARQGGQLITRYW 377

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-D 453
                + ++  +  R   + +F ++T +   E   +   +     + +L   + V  P +
Sbjct: 378 GEIDAIQMLDETGGRSQYVCLFNDITKRKAQEHVRDQEREFLEALLGNLPVSLFVLDPVN 437

Query: 454 GRIKLSNP 461
             +   N 
Sbjct: 438 LNVVAINR 445


>gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
 gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
          Length = 1029

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/723 (18%), Positives = 259/723 (35%), Gaps = 66/723 (9%)

Query: 125  IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA-FLRILSLDGIYSELAETTL 183
               ++  E LR+EG+  +     +       +GRV       L +   DG          
Sbjct: 312  ADRARFLETLRREGRLVNYEVRLRRK-----DGRVLWGLENVLLVQEPDGTECIEGTLID 366

Query: 184  KCKKLSNHISVFKVLFDSLDFLVWHR-DQAGD--ILWANISYKKNTE-TEGIVFQKAIGE 239
              + L        +   + D + W R    G   +   N S+++ T  T  +++ + + +
Sbjct: 367  VTELLEQRRRYLGLYAHTEDAIFWIRVTDDGRFLVEATNPSHQRKTGLTPEMLWNRPLNK 426

Query: 240  --SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-KIVRVLNSFGE----AGIA 292
                 +             A      E    L  G      ++V + +  G     AGIA
Sbjct: 427  ILPPDIVAHVTGNYRRCLEAGHPIEYEETLDLPAGRRTWLTQLVPIPDPDGRIRLIAGIA 486

Query: 293  IDVSKEITVN-----------------------DQLTHTYE-ILHNLTVAIAIFDQNRYL 328
             D+++   +                        ++L    E  +     ++ ++D+ R  
Sbjct: 487  RDITELRRLQALLEEEGLFLEQLVSGASRKTLCERLCRVAERFIEGARASVWMYDEGRLH 546

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-----EQLNWKTWKENIFSVYK 383
                    E +           +   L E   S   +          W  ++E   +   
Sbjct: 547  LCAAPELPESFRALFDGQLIGSNQGSLGEAAFSRRPVWVSDIKHDPRWGAFREQALAQGL 606

Query: 384  SS------ETHKDTWHLPNGQTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQ 436
             +         K       G     + +  P     +    +L      + +     +  
Sbjct: 607  RACWAVPFFGRKGELLGVLGLCFDQVRSPLPDEQAVVARLAHLAGVGMAKVRLREERERL 666

Query: 437  GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               +  ++EGVA+    G +   N AF  L     + +      +NI         + D 
Sbjct: 667  ARVVAQITEGVAITDTMGNVVWVNEAFTCLTGYRADEVLG----KNIEHLLHGPETDRDT 722

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRA 551
                   +         L    +  S    E  I  L + Q           +VT+ V A
Sbjct: 723  LRRMRLRLLRGRPAHARLYHYRKDGSGFWDEVHIDRLYDEQGQHIGYIGLMADVTELVEA 782

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            ER L    E   +A  +K++F+ ++S+E+R+PLT I+GF +LL             ++  
Sbjct: 783  ERQLKAAKERAEEASRLKSAFLANMSHEIRTPLTGILGFAELLDEELETRQQEDLREFTH 842

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I  S+  LL L+NDILDL+ ++A  ++L      + D+  +  Q +     E  +++++
Sbjct: 843  IIDRSARRLLTLLNDILDLSKIEANRLELKLQPTDVVDVARQAVQLMQPLAEEKGLKLEL 902

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             ++  L +  AD  RL Q+   +LSNA+ F+ +G  V ++  +  G  + +V++ G  I 
Sbjct: 903  HAEENLTA-RADPNRLHQVLVNLLSNAIKFTDEGH-VRVELGQKKGWVLLAVEDTGCGIS 960

Query: 732  EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +    +F  F         + +GVGLGL+IV+  I+L  G +++ S     T     +P
Sbjct: 961  PEFLPHLFEPFRQEHEGLTQKHQGVGLGLAIVKRLIDLMSGQITVQSEVGRGTRFEILLP 1020

Query: 790  SKE 792
            S E
Sbjct: 1021 SVE 1023



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/428 (13%), Positives = 132/428 (30%), Gaps = 36/428 (8%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIVFQKAIGE 239
             ++        ++++ LF++    V   D   G IL AN + ++    +     +   E
Sbjct: 1   MEVREAPGLKQEALYRALFETTQDAVLIADAETGQILEANPAAERLFGYDRATLCRMHQE 60

Query: 240 SRKLFKEEIK-KRMISSSALEKNFCETVSTLEHGNNKSY------KIVRVLNSFGEAGIA 292
                +     ++    +     F E    ++H +          +++ V       G+ 
Sbjct: 61  ELHPAELAASYRKKFRRAVEAGTFRERGLIVQHADGSWIPVELSGQVLEVGGRKLIQGVF 120

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            D+ +   + +       +       I +  Q+  +   N     ++      +   P  
Sbjct: 121 RDLRELQRLTETEALYRTLFETSLAGIYLL-QDGRVVVVNPQAAAMFGYTPEEIVGRPVL 179

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNPR 409
             + E  R      E +  +   E     Y+     KD    W    G+ +         
Sbjct: 180 SIVAEEDRE--LAAENIRRRLAGEVEEIRYRFRGLRKDGSRFWAEVRGRRIVYNGRPAIL 237

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G  +    ++  QV    K            +H   G      DGRI   NPA   +   
Sbjct: 238 GTVL----DIDEQVRAIEKLKQSEARYRRLFEHSVAGFYRTTVDGRILRVNPALARMLGY 293

Query: 470 EENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           ++     G    I  +       + E+   +     + +++   +   G +    ++VL 
Sbjct: 294 DDPSELEGRPTSILYVEEADRARFLETLRRE---GRLVNYEVRLRRKDGRVLWGLENVL- 349

Query: 528 YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS--FV---QHVS 577
             ++  P+       T++    + +  R    L    E       + +   F+    + S
Sbjct: 350 --LVQEPDGTECIEGTLIDVTELLEQRRRYLGLYAHTEDAIFWIRVTDDGRFLVEATNPS 407

Query: 578 YELRSPLT 585
           ++ ++ LT
Sbjct: 408 HQRKTGLT 415



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 108/370 (29%), Gaps = 61/370 (16%)

Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           ++      LRK+G  F           I   GR +          + G   ++ E     
Sbjct: 204 EIRYRFRGLRKDGSRFWAEVR---GRRIVYNGRPA----------ILGTVLDIDEQVRAI 250

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           +KL    + ++ LF+      +     G IL  N +  +    +     +    S    +
Sbjct: 251 EKLKQSEARYRRLFEHSVAGFYRTTVDGRILRVNPALARMLGYDDPSELEGRPTSILYVE 310

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYK-------IVRVLNSFGEAGIAIDVSKE 298
           E  + R + +   E         L   + +          +     +    G  IDV++ 
Sbjct: 311 EADRARFLETLRREGRLVNYEVRLRRKDGRVLWGLENVLLVQEPDGTECIEGTLIDVTEL 370

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ-FHNRSFVELWEIDLAFLATNPSNDELLE 357
           +    +    Y    +    I + D  R+L    N S      +    L   P N     
Sbjct: 371 LEQRRRYLGLYAHTEDAIFWIRVTDDGRFLVEATNPSHQRKTGLTPEMLWNRPLN----- 425

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLH---VIVTSNPRGG- 411
                  LP  +       N     ++     +++T  LP G+      ++   +P G  
Sbjct: 426 -----KILPPDIVAHVT-GNYRRCLEAGHPIEYEETLDLPAGRRTWLTQLVPIPDPDGRI 479

Query: 412 --TIWMFENLTVQVDLETKY--------------------NTLVKVQGETIDHLSEGVAV 449
                +  ++T    L+                         L +V    I+     V +
Sbjct: 480 RLIAGIARDITELRRLQALLEEEGLFLEQLVSGASRKTLCERLCRVAERFIEGARASVWM 539

Query: 450 FGPDGRIKLS 459
           +  +GR+ L 
Sbjct: 540 YD-EGRLHLC 548


>gi|313673507|ref|YP_004051618.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940263|gb|ADR19455.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1101

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/506 (21%), Positives = 207/506 (40%), Gaps = 41/506 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V ++      IL  +   + I +Q+      N S   +       L    ++D     
Sbjct: 345 EKVLEREQFIENILSTIHTGLYIINQDGNTIRINESLTRILGYTEEDLLGKSAHDIFHLH 404

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIVTSN-----PRGG 411
            +  N  P           IF V  ++  ++  + +   NG  LHV V S          
Sbjct: 405 HQDKNNCP-----------IFKVITTNREYEGTEIFKSKNGDFLHVTVKSKRFEFQGEHY 453

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +  F +++  V+ E + N    +    I++ ++ V +   D  I   N      +    
Sbjct: 454 ALVTFIDISELVERENELNKTNFILNTIIENFNDAVMLTD-DKTIVQINDKMIKDFCVPL 512

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           + L  G  I  + A  S  +     +  FA     + D+  ++   L+ + +  +E   +
Sbjct: 513 DLLPEG--IDKVFAFISLNFKNQSEFMNFA-----YSDKENTI---LDTVDEKHIEIRKV 562

Query: 532 PLPN---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           P+ +   +  +  F + T+++   + +    E   +A++ K+ F+  +S+E+R+P+  II
Sbjct: 563 PIKSFKFSGILWIFSDRTETISNMKKMAMLKEKAEEANKAKSLFLSSMSHEIRTPINGII 622

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L+      +L+ + S Y+  I +SS  LL L+NDILDL+ +++G +KL        
Sbjct: 623 GAIELI---PKHNLSDEISSYLNIIKSSSEHLLMLINDILDLSKIESGYLKLENIPFEPI 679

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST- 707
            +L  V+  I        +   +    +      D  RL Q+   +  NA+ F+ KG   
Sbjct: 680 KVLKRVRSIIYPTTIPKGLTFSIDYPDRGICVYGDPHRLSQVLINLSGNAVKFTEKGEVE 739

Query: 708 ---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
               IL  +       FSV++ G  IPED    +F  F    ++H  +  G GLGL I +
Sbjct: 740 VKMEILSESETEIRLKFSVRDTGIGIPEDKMDKLFKPFSQIDDSHTRKFGGTGLGLVISQ 799

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
           + + + GG + + S     +  +  I
Sbjct: 800 NLVKMFGGIIKVESKVGEGSIFSFEI 825



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 16/152 (10%)

Query: 293 IDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           ID+S+ +   ++L  T      I+ N   A+ + D ++ +   N   ++ + + L  L  
Sbjct: 459 IDISELVERENELNKTNFILNTIIENFNDAVMLTD-DKTIVQINDKMIKDFCVPLDLLPE 517

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQTLHVIVTSN 407
               D++  F+         LN+K   E +   Y   E T  DT    + +   V + S 
Sbjct: 518 G--IDKVFAFI--------SLNFKNQSEFMNFAYSDKENTILDTVDEKHIEIRKVPIKSF 567

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
              G +W+F + T  +    K   L +   E 
Sbjct: 568 KFSGILWIFSDRTETISNMKKMAMLKEKAEEA 599


>gi|332525007|ref|ZP_08401191.1| signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332108300|gb|EGJ09524.1| signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 1104

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 141/812 (17%), Positives = 282/812 (34%), Gaps = 53/812 (6%)

Query: 18  TLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLT 77
                 +      A + L  ++      RQR +LA    +    L    D  +    +  
Sbjct: 168 PPAPSVLLGIAVAALLGLYGLVSAERNWRQRLALATARRQEQRSLVAARDSEALLRLIYD 227

Query: 78  ENNCLTIVWDGKDET-----PEI--IGQLHQRIDIPQTDTDLL-----SFENWLKFHHYI 125
             +   +V  G D       P    I +L   +  P T    L                 
Sbjct: 228 HVDEGLLV-AGPDLRVRAMNPRFAEITRLDPALGRPGTPVRALLEAQMRAGRLGGGDPEA 286

Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
            + +    LR  G +  +     +   +++    +    F+       +  ++ +     
Sbjct: 287 TIERWLALLRGGGHATTVRVM-PDGRTVELRRNATPDGGFV------AVAVDITQRLAAE 339

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
             L+    +  +L DS     W  D A     AN +        G+  +   G +   F 
Sbjct: 340 AALAEKQRMLALLLDSTTQGFWFVDNALRTTDANPA---MCRMLGLRLEALRGRTVWEFV 396

Query: 246 EEI-----KKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSFGEAGIAI----- 293
           +E      ++++    A E    E     + G       +   +L++ G    AI     
Sbjct: 397 DEDQAVILREQVRRREAGEVGHYELRLRRDDGTPLWCMNQATPILDAQGRKTGAIGLFSD 456

Query: 294 --DVSKEITVNDQLTHTYE--------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             ++ +   +  + +   E         L NL   +   D+       NR  VEL  +  
Sbjct: 457 IGELRRATELQQRTSRLLEEKSRLLEATLANLPQGVLTLDEQGRAAAWNRRLVELTGVPE 516

Query: 344 AFLATNPSNDELLEFLRSANKL---PEQLNWKTWKENIFSVYKS---SETHKDTWHLPNG 397
             L T+P+ +E   +      +   P +L+  T +E I +  +    +          +G
Sbjct: 517 ELLRTHPTLNEFARWQVDHGGVGPAPGELD-PTAREPIEAALRGDLDALPASYQRTGADG 575

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           +TL V    +  G  +  F ++T  +  E              D     V V  PDGR +
Sbjct: 576 RTLQVATYRSDGGPVVRTFTDITDALHAEQALRESESRFRSLADAAPALVVVCAPDGRPE 635

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N  +++   +   +         + A        +       A   S +   +   G 
Sbjct: 636 WVNQRWQAFTGSGVEQALAEPWHARVHADDQAACIAAFEAARPEARSFSAEYRLRRADGG 695

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              ++D+ +            +    ++T    AE AL    +   +A+  K+ F+  +S
Sbjct: 696 WGWIADTCVPRRTPGGGLEGWIRYGWDITARKAAEAALIAARDDAERANRAKSDFLSRMS 755

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  ++GF  LL++     L   Q Q ++ +      LL +++ +LDLA +D G 
Sbjct: 756 HELRTPLNAVLGFGQLLESDAAEPLTPLQRQRLQQVLRGGRHLLAMIDQVLDLAGIDGGT 815

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +    +     + E  + +A    E  +R++  +    G  +AD  RL Q+ + +L+N
Sbjct: 816 LGVRLEAVPAAAAVAEACRLVAPLAAERGVRLEPPAVAVEGFVLADAARLRQVLAGLLTN 875

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGL 756
           A+ ++ +G  V +    +       V ++G  I     + VF  F           G G+
Sbjct: 876 AVKYNRRGGRVSIAWRDEGEHLRLEVHDDGPGIAPADQRRVFQAFERLEGAHAASDGAGV 935

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL++ +  +    G + + S+    +T   R+
Sbjct: 936 GLALAKWLVEAMHGRIGLDSAPGRGSTFWVRL 967


>gi|83593696|ref|YP_427448.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
 gi|83576610|gb|ABC23161.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
          Length = 1560

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 148/853 (17%), Positives = 293/853 (34%), Gaps = 97/853 (11%)

Query: 7    TIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEIC 66
            T+    G  +  +    +   G  A +L      +I L + R     +     S + E  
Sbjct: 297  TVSPAYGHAVQRIAPWVVVSLGIGASILAAGFAAVIGLNQARRREIAQAQARLSTIVENS 356

Query: 67   DQLSKYHSLLTENNCLTIVWDGKDET------PEIIGQLHQRIDIPQTDTDLLSFENWLK 120
                   +L    +   + W+   E       PE+IG+    + IP            + 
Sbjct: 357  GDAIIGEAL----DGTIVGWNRAAEALFGYKAPEVIGKALAPLLIPADR---------MA 403

Query: 121  FHHYIKLSK-------ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR-ILSLD 172
             +  I LS        A +  R                     G V G    +R I    
Sbjct: 404  ENQSIVLSALSGEAVMAFDTQRIHADGHLFDVSMTACPVHDRLGHVVGVANLIRDIRKRK 463

Query: 173  GIYSELAE--------TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
                 L E           +  +L       + + DS+  ++ + D+      AN +Y  
Sbjct: 464  AAEQSLLEFNAQLEKQVASRTAELEKARRALQTVLDSVPSMIGYWDRDLHCHIANRAYCS 523

Query: 225  --NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN----KSYK 278
              N +  G++ +       +      +  + +    +    E +    +G       ++ 
Sbjct: 524  WFNVDPSGLIGKSMRSLLGEALFTANRPFIEAVLRGQPQTFERMIPRPNGQGVRHSLAHY 583

Query: 279  IVRVLNSFGEAGIAI--DVSKEIT----VNDQLTHTYEILHNLTVAI--AIFDQNRYLQF 330
            I  V++       A+  DVS+ +     ++  L     +L  +   +  +I D+N  +  
Sbjct: 584  IPDVVDGEVLGFYALVHDVSELVEGRQKLDAALRENEALLRTIDEQLLCSITDRNGNIIS 643

Query: 331  HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
             N +F +L       L                  +   L+ KT+  ++++   +  + + 
Sbjct: 644  INDNFCKLMGYTKDELLGL-----------DHRIMNSGLHDKTFWADVWATISAGGSWRG 692

Query: 391  TWH--LPNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGETID 441
                   +G    +     P  G        + +  ++T +   E + N    +    + 
Sbjct: 693  EVCNKAKDGALYWLDSVLTPFFGEDGSIDRYVALRIDITDRKKAEAERNRSNTLLRSVLA 752

Query: 442  HLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-----HIRNIAATCSRYYNESD 495
               E  +    PDG I + N     L       +         H+ +  A   R  ++  
Sbjct: 753  SAREFSIIATDPDGVITIFNSGAEKLLGYSAEEMVGKQTPALIHLADQVAERGRSLSDEF 812

Query: 496  GWDLFAAIITSFDDERKSLQG---TLELLSDSVLEYSII-------PLPNAQTMLTFVNV 545
            G  +    +     ER  ++    T        LE  ++           A  +    +V
Sbjct: 813  GVPIEGFRVFVHRSERDGVEAQEWTYVRKDGGHLEVLLVVTAIREDDGRIAGYLGVAQDV 872

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +     ERAL    +A  +A  +K  F+ ++S+E+R+P+  I+G   L++ +   +L   
Sbjct: 873  SRRKEFERALVLAKQAAEEASVVKGQFLANMSHEIRTPMNAILGMLTLVQRT---ALTPH 929

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q+ YV    +++  LL L+NDILD + ++AG + L      L  +L ++   ++    + 
Sbjct: 930  QADYVCKAHSAAGSLLGLLNDILDFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDK 989

Query: 666  NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDF--I 720
             + +       L  SF+ D  RL Q+   +  NA+ F+ +G  ++     AR++      
Sbjct: 990  GVEVLFDIAPHLPDSFIGDDLRLRQVLLNLAGNALKFTDQGQVIVSVGVLAREDDRLTMR 1049

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             +V + G  I  D   S+F  F        RR  G GLGL+I    +   GG + + S  
Sbjct: 1050 MAVSDTGIGIAADQLASIFGAFEQAETSTTRRFGGSGLGLTITRHLVERMGGVLRVESQP 1109

Query: 779  EGVTTINC--RIP 789
               +       +P
Sbjct: 1110 GRGSRFWFDITLP 1122


>gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 421

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 91/409 (22%), Positives = 182/409 (44%), Gaps = 21/409 (5%)

Query: 389 KDTWHLPNGQTLHVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           +  W + +G+    +V+  P     +   I + +++T +  +E       +      ++ 
Sbjct: 25  EFDWLIKSGEVKTSLVSCEPIVIDNKDCVISIIKDITDRKKIEENLRQSEERFRTAFENA 84

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
             G+A+   +G     N A   +   +   L     +  I        +    +   +  
Sbjct: 85  GSGMALVSLNGYFIKVNRALCQILGYDSPDLLTKK-VTEIITGEELLKDFDLAYQFISGQ 143

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           IT++  E+  L  + +++   +L  S++   N + +     + D                
Sbjct: 144 ITNYQVEKSCLHKSGKII-WVLLNVSLLSDVNGKPLHFIWQIQDISEQ-----------H 191

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + +++KN FV  VS+ELR+PLT I G  ++L T  L     +  Q ++   ++S  LL L
Sbjct: 192 EVEQLKNEFVSVVSHELRTPLTAIKGALEILATGILVDEPREAEQMLKIAVSNSERLLRL 251

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           VN+IL+L  +D+G M+LN     +N ++ +  +++     +  + I     D      +A
Sbjct: 252 VNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQKRMEISYSTLDVHNSKILA 311

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D + ++Q+ + +LSN++ FS  G+ V +     + + I +VK+ G  IP D  K++F RF
Sbjct: 312 DEETIIQVLTNLLSNSVKFSHAGTKVEIYTKMGDKEIIIAVKDYGKGIPADKLKTIFERF 371

Query: 743 VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                    Q  G GLGL+I ++ +  H G + I S+ +  +T    +P
Sbjct: 372 EQVDVSDARQNGGTGLGLAICKNIVEKHQGKIWIESTLDSGSTFYFTLP 420



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 63/178 (35%), Gaps = 30/178 (16%)

Query: 294 DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D++    + + L  + E       N    +A+   N Y    NR+  ++   D   L T 
Sbjct: 59  DITDRKKIEENLRQSEERFRTAFENAGSGMALVSLNGYFIKVNRALCQILGYDSPDLLTK 118

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               ++ E +     L    ++    + I     + +  K   H  +G+ + V++  +  
Sbjct: 119 ----KVTEIITGEELL---KDFDLAYQFISGQITNYQVEKSCLH-KSGKIIWVLLNVSLL 170

Query: 410 GGT-------IWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAV 449
                     IW  ++++ Q ++E            +  T +      ++ L+ G+ V
Sbjct: 171 SDVNGKPLHFIWQIQDISEQHEVEQLKNEFVSVVSHELRTPLTAIKGALEILATGILV 228


>gi|299146661|ref|ZP_07039729.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517152|gb|EFI41033.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 785

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/648 (18%), Positives = 246/648 (37%), Gaps = 43/648 (6%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKV-----------------LFDSLDFL--VWHRDQAG 213
            +  +L     + ++L   +S  +                  + DSL  +  V+++ + G
Sbjct: 9   ALLEQLEALKKENEQLRKELSTLRDEKYNDRPVSFKEKYAVRILDSLPDMLTVFNQSEVG 68

Query: 214 DILWANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
             + +N         N +  G+  Q  +        + I   M  +              
Sbjct: 69  IEVVSNEETNHVGISNKDFRGMRMQDMVPPEA---YQNIHSNMRHAITTGTVSTAHHELD 125

Query: 270 EHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
            +G    Y+  +  L+      +  D+++ +    QL     +L  ++ +I    ++  L
Sbjct: 126 FNGERHYYENRIFPLDEEYVLIMCRDITERVATQRQLEVFKSVLDKVSDSILAVAEDGTL 185

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            + N+ F+E + +          +   L    +  +  EQ             Y+++   
Sbjct: 186 VYANKQFIEEYGVTQELGTQKIYD---LRVSMTNKEAWEQKLQVIRDHEGSLAYRAAYIP 242

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
                    Q    ++  N +  T +  +++T  +    +   L  +    ++++   + 
Sbjct: 243 YGHTKERVHQVSTFLIRENNQELTWFFTQDITDVIKKRDELRELNLLLDGILNNIPVYLF 302

Query: 449 VFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V  P  D R    N AF        ++    T                D  +L       
Sbjct: 303 VKDPEDDLRYLYWNKAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQT-HKR 361

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRK 564
            D +   L    E      L+ +++P+   +   +    ++T+    E+ L +      +
Sbjct: 362 IDMQETYLSANGEARIVQTLK-ALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQ 420

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +D +K++F+ ++S+E+R+PL  I+GF+ LL          ++  Y   I+ +S ILL L+
Sbjct: 421 SDRLKSAFLANMSHEIRTPLNAIVGFSQLL---PSAETAEEKKLYSGIINQNSDILLQLI 477

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILDL+ ++AG ++     + L ++   +      ++ E  + +   ++ +      D+
Sbjct: 478 NDILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVKE-GVTLVFDNEEEDLLMEGDQ 536

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            R++Q+ +  L+NA  F+ +G  +     R + D    VK+ G  I  +    +F RFV 
Sbjct: 537 NRIMQVITNFLTNASKFTYEGE-IRFGFGRMDKDIRVYVKDTGIGIESEKVDHIFERFVK 595

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                Q  G GLGLSI    I   GG + ++S     +T    IP +E
Sbjct: 596 LNSFAQ--GTGLGLSICRMIIEKIGGEIGVTSELGKGSTFYFTIPYEE 641


>gi|329955232|ref|ZP_08296189.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328526231|gb|EGF53250.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 929

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 125/639 (19%), Positives = 250/639 (39%), Gaps = 43/639 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ E + +  KL         +  +     W  D  G   +    +     TE    Q+
Sbjct: 125 RDITERSQRKLKLEKTNRELNEIQKAALIGRWQYDS-GKKSFCYTGHSGVMCTE--EEQE 181

Query: 236 AIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNKSYKIV--------RVLN 284
            + E  K       + +        L+ +   ++    H   + + I         +   
Sbjct: 182 ILLEDYKTHILPEDREVFGKWLMQNLQGDMEASIDYRIHFRKRVFYIRLKTFSYEKQPDG 241

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV-------- 336
           +    G   +++      + +      ++N T  I    ++  L F NR F         
Sbjct: 242 NILLEGYIQNITDIQQRRNDINLLTHAINNSTEDIFAAHEDGTLVFANRRFREHHNIGVA 301

Query: 337 -ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            ++ E+++  +  N       + L  + K  E       K + F +Y     H +   + 
Sbjct: 302 DDISELNIYRIDMNTPGGNFWQGLLHSLKKGE-------KRSGFVLYNPLPDHPEVLAM- 353

Query: 396 NGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            G    V  TS+     +W F  ++T ++  E +     ++  +TI++L  G+ V     
Sbjct: 354 EGSAYWV--TSDKGEAILWGFGRDITQRIKNEQQIKRFSQILDKTIENLPAGIVVKDIRS 411

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-TCSRYYNESDGWDLFAAIITSFDDERKS 513
             K       S  +    + + G    +      ++     D       +   +  E   
Sbjct: 412 GFKYLYRNRESYNRNIPLKEALGKDDFDFYPFDVAQEKRTQDIEIARTGVEKHWITEEHD 471

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G    L    +       P    +    ++T+  R +R L    E    +D++K++F+
Sbjct: 472 QNGKSIFLDKRKIRIESDDFPPI-LLSIEWDITEMERMKRELLVAKEKAETSDQLKSAFL 530

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+ ++  S   + + ++  Y + + A++  LL L+N+ILDL+ +
Sbjct: 531 ANMSHEIRTPLNAIVGFSRIIAES---TDDEERKNYYDIVEANNERLLQLINEILDLSKI 587

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG+++   + + L+ L NE+  ++  +     + +   +  +      D+ R+ Q+ S 
Sbjct: 588 EAGMVEFTIAPMRLHLLCNEIYNALKFRCPM-GVELVYEASDEDIVIEGDKNRIFQVVSN 646

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA  F++ GS V     R   +  F V + G  I  D    VF RFV   +  Q  G
Sbjct: 647 LIGNAFKFTTNGS-VSYGYRRKGSEIEFHVSDTGIGIEADKLSKVFERFVKVNNFAQ--G 703

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGLSI ++ I   GG +S+SS     TT    +P  E
Sbjct: 704 TGLGLSICKTIIERLGGTISVSSEMGKGTTFLFTLPLSE 742



 Score = 41.1 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 121/373 (32%), Gaps = 74/373 (19%)

Query: 115 FENWLKFHHYIKLSKATE-KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
           F  WL  +    +  + + ++    + F +  +T +    + +G +           L+G
Sbjct: 199 FGKWLMQNLQGDMEASIDYRIHFRKRVFYIRLKTFSYEK-QPDGNIL----------LEG 247

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
               + +   +     N I++     ++    ++   + G +++AN  ++   E   I  
Sbjct: 248 YIQNITDIQQR----RNDINLLTHAINNSTEDIFAAHEDGTLVFANRRFR---EHHNIGV 300

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK------------------ 275
              I E           R+  ++     +   + +L+ G  +                  
Sbjct: 301 ADDISELN-------IYRIDMNTPGGNFWQGLLHSLKKGEKRSGFVLYNPLPDHPEVLAM 353

Query: 276 ---SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYL 328
              +Y +          G   D+++ I    Q+    +IL     NL   I + D     
Sbjct: 354 EGSAYWVTSDKGEAILWGFGRDITQRIKNEQQIKRFSQILDKTIENLPAGIVVKD----- 408

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
                 F  L+    ++    P  + L +     +  P  +  +   ++I       E H
Sbjct: 409 --IRSGFKYLYRNRESYNRNIPLKEALGK--DDFDFYPFDVAQEKRTQDIEIARTGVEKH 464

Query: 389 -KDTWHLPNGQTL-----HVIVTSNPRGGTIWMFE-NLTVQVDLETKY-------NTLVK 434
                H  NG+++      + + S+     +   E ++T    ++ +         T  +
Sbjct: 465 WITEEHDQNGKSIFLDKRKIRIESDDFPPILLSIEWDITEMERMKRELLVAKEKAETSDQ 524

Query: 435 VQGETIDHLSEGV 447
           ++   + ++S  +
Sbjct: 525 LKSAFLANMSHEI 537


>gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1143

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/666 (17%), Positives = 243/666 (36%), Gaps = 72/666 (10%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             +     E+       +K     ++ +++ D++  ++W +D     ++AN +    T  
Sbjct: 357 TDITEQKREIETRKALERKSRQLDTMLRLICDNVPDMIWAKDMQKKYIFANKA-VCETLL 415

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMIS-----------------SSALEKNFCETVSTLEH 271
                 + IG +   F +  + R                    +                
Sbjct: 416 IARDTDEPIGRTDLFFAQRERARHPDNPDWHSFGEICRDTDQITIDAGCPQQFDEYGNVG 475

Query: 272 GNNKSYKIVRVLN------SFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAI 321
           G      + +         + G  G A DV+ +  +  +L         IL ++   I +
Sbjct: 476 GKFLFLDVRKAPLFDESGVNIGTVGSARDVTGQRRMEKKLEAGNVALRAILDSIPADICV 535

Query: 322 FD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
            D     + F N S  E   ++      +P             K  +     +W+    S
Sbjct: 536 VDVATDEILFMNASMRE-NSVESGTGFHHPRQQSDGGEPLCPGKALQGNEMASWEALDHS 594

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             K +          +G+   + +             ++T +   E      V  Q   +
Sbjct: 595 TGKWNLHFDRPVSWLDGRPARIRIA-----------MDITARKHAERLMEKAVDEQRILL 643

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWK-------TEENRLSPGTHIRNIAATCSRYYNE 493
           D++   +     +      N A  +            +        + ++    +     
Sbjct: 644 DYIQTQIWYLIDEQTYGAVNEAHAAFNGLGIGDMAYRDIYEIYPVDVADVCRQGNEVVFS 703

Query: 494 SDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           S         +  F  E++ L    + +L +D  +EY          + +  ++T+  ++
Sbjct: 704 SGRPVRTEEWLPHFSGEKRFLSILKSPKLRADGTVEY---------VVCSGEDITERWKS 754

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL +  E   +A  +K+ F+  +S+E+R+P+  I+G   LL+T     LN+ Q+ +V+
Sbjct: 755 EEALKKAKEQAEEASRVKSGFLASMSHEIRTPINGIMGMLQLLQT---ADLNADQASFVD 811

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S   L+ L++DI+D + ++AG + +  + + L  + + V++        N + +  
Sbjct: 812 MAVRSCDRLVRLLSDIMDFSRIEAGKLTIQSAPMSLESVFSHVRELFTPLSGSNGVVLDF 871

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVK 724
             D  L    + D  RL QI + ++ NA  F++ G  + ++A              F V 
Sbjct: 872 TLDPALPDRILGDAFRLQQILNNLVDNACKFTTSG-RITVQAWNLTAVEPRTVRVFFEVS 930

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP++  + +F+ F+   + +    +GVGLGLSI +  + L GG +S++S     T
Sbjct: 931 DTGIGIPDEDLRRLFDPFIQLCDGYVRSHKGVGLGLSICKRLVELMGGGMSVTSEAGKGT 990

Query: 783 TINCRI 788
           T    +
Sbjct: 991 TFAFSL 996



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 127/417 (30%), Gaps = 47/417 (11%)

Query: 85  VWDGKDETPEIIGQLHQRIDI---PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141
           V +G+   P II  L +R  +    Q   ++LS  + L     I     T+ L       
Sbjct: 147 VIEGRTPDPVII-DLTRRDGVLRKVQAQAEILSAGDGLTDIRCIIFWDMTDWLETH---- 201

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            L   TQ +    I+ R +   A     ++     EL       + L    +    L  +
Sbjct: 202 RLFHHTQQELGETIDDRTAALTA-----AVSDAKRELELRQDTERALQQAHNNLSRLIQT 256

Query: 202 LDFLVWHRDQAG-DILWANISYKKNTETEGIVFQKAIG-ESRKLFKEEIK---KRMISSS 256
           +  +V+ R   G    + +               KA G  + ++  E+     + M  +S
Sbjct: 257 IPVIVYSRSLDGSTAHYCSPQALDVLGYSPGETDKAKGFWTDRIHPEDAPVYTEAMKLAS 316

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA----GIAIDVSK---EITVNDQLTHTY 309
                  E     E G         V+   G      G+A D+++   EI     L    
Sbjct: 317 RTGFLDVEYRVLSETGKETWLHDKAVMTDKGAGLVMHGVATDITEQKREIETRKALERKS 376

Query: 310 EILHNL--------TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             L  +           I   D  +   F N++  E   I           D      R 
Sbjct: 377 RQLDTMLRLICDNVPDMIWAKDMQKKYIFANKAVCETLLIARDTDEPIGRTDLFFAQ-RE 435

Query: 362 ANKLPEQLNWKTW----KENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNP-------R 409
             + P+  +W ++    ++       +    + D +    G+ L + V   P        
Sbjct: 436 RARHPDNPDWHSFGEICRDTDQITIDAGCPQQFDEYGNVGGKFLFLDVRKAPLFDESGVN 495

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRS 465
            GT+    ++T Q  +E K           +D +   + V       I   N + R 
Sbjct: 496 IGTVGSARDVTGQRRMEKKLEAGNVALRAILDSIPADICVVDVATDEILFMNASMRE 552


>gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 568

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 101/487 (20%), Positives = 205/487 (42%), Gaps = 25/487 (5%)

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA---NKLPEQLNWKTWKENIFS 380
            ++      R+   L  +            E +  L           + + + + E+I  
Sbjct: 84  PDQRNAIIARARDSLTYVREEIAYRRRDGSEFIANLYMRLLRGATENEADLEGFVEDITE 143

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             ++ ++ +   +  N + L    TS  +     +   +  +   E           + +
Sbjct: 144 RKRAEDSLRV--YQENLENLVRARTSELQDANERLTREIEERNRAERILIEREAQYRDLV 201

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE--SDGWD 498
           +  +  +  + PDGRI   N   +S +   E  +   + I  +        +E  S   D
Sbjct: 202 ESANCVILRWLPDGRIIFFNRFAQSFFGYREEEVLGRSIIGTLIPPADSTGHELTSLATD 261

Query: 499 LFAAIITSFDDERKSLQGTLELL------------SDSVLEYSIIPLPNAQTMLTFVNVT 546
           + +       +  ++L+   EL+              SV E   I +   Q + T     
Sbjct: 262 IVSHPEAYAHNINENLRKNGELVWVAWTNKPILAPDGSVAEILSIGIDITQLVHTEQ--- 318

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              R    L    E    AD +K++F+  +S+ELR+PL +IIGFT +L     G +N +Q
Sbjct: 319 ALRRTLDELAWAKERAESADHLKSAFLATMSHELRTPLNSIIGFTGILLQGLSGPINDEQ 378

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ +  +  S+  LL+L++D+LD++ ++AG +K+ +    L + + +V QS+     +  
Sbjct: 379 AKQLGMVKNSANHLLSLISDVLDISKIEAGQLKVEHEPFDLRESILKVVQSVRPLAEKKG 438

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +      ++G+   D +R+ Q+   +LSNA+ F+ +G  V +   R+   F+ SV+++
Sbjct: 439 LDLSCDLAEQVGNISGDARRVEQVLLNLLSNALKFTEQGG-VRVSCGREGDAFLTSVRDS 497

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++  + +F  F         +  G GLGLSI +  + L GG + + SS    +T 
Sbjct: 498 GIGIKDEELERLFKPFHQVDTGLSRKYEGTGLGLSISKKLVELMGGEIRVESSPGKGSTF 557

Query: 785 NCRIPSK 791
              +P +
Sbjct: 558 AFTLPLE 564



 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 87/333 (26%), Gaps = 72/333 (21%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ--KAIGESRK 242
            + L      F+ +F+     ++     G     N +                A   SR+
Sbjct: 20  EEALRASEEKFRNIFEKAPIGIFQSSIEGRFTSVNGTLATMFRYSSPREMIMDARDISRQ 79

Query: 243 LFKEEIKKRMISSSAL-------EKNFCETVSTLEHGNNKSYKIVR--VLNSFGEAGIAI 293
           LF    ++  I + A        E+         E   N   +++R    N     G   
Sbjct: 80  LFICPDQRNAIIARARDSLTYVREEIAYRRRDGSEFIANLYMRLLRGATENEADLEGFVE 139

Query: 294 DVSKEITVNDQLTHTYEILHNLTVA----------------------------------- 318
           D+++     D L    E L NL  A                                   
Sbjct: 140 DITERKRAEDSLRVYQENLENLVRARTSELQDANERLTREIEERNRAERILIEREAQYRD 199

Query: 319 --------IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
                   I  +  +  + F NR     +      +        L+    S         
Sbjct: 200 LVESANCVILRWLPDGRIIFFNRFAQSFFGYREEEVLGRSIIGTLIPPADSTG-----HE 254

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTIWMFE---NLTVQV 423
             +   +I S  ++   + +     NG+ + V  T+     P G    +     ++T  V
Sbjct: 255 LTSLATDIVSHPEAYAHNINENLRKNGELVWVAWTNKPILAPDGSVAEILSIGIDITQLV 314

Query: 424 DLETKYNTLV------KVQGETIDHLSEGVAVF 450
             E      +      K + E+ DHL       
Sbjct: 315 HTEQALRRTLDELAWAKERAESADHLKSAFLAT 347


>gi|240850171|ref|YP_002971564.1| two-component sensor histidine kinase [Bartonella grahamii as4aup]
 gi|240267294|gb|ACS50882.1| two-component sensor histidine kinase [Bartonella grahamii as4aup]
          Length = 773

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 105/497 (21%), Positives = 207/497 (41%), Gaps = 42/497 (8%)

Query: 329 QFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            + +R+  E+   +    L +      ++         P   N+    + + S  K    
Sbjct: 285 VYWSRAMYEMLGYVPQDALLSISQISAIIN--------PNDANFFDLAQELMSGKKKHID 336

Query: 388 HKDTWHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                   +G  + + + +          + +  +++ Q  L  +         + I+++
Sbjct: 337 INVPMRHADGHYVWMRIRAEVTEEEEPHLVGISFDISEQQQLAEQTAQADLRIRDAIENI 396

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           SE   ++  +GR+ +SN  F       +  L  G     + A      +E    D     
Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQILQSGIQRATVEAMARPAISEYPLKDDGTGN 456

Query: 504 ITSFD----------DERKSLQGTLELLSDSVLE---------------YSIIPLPNAQT 538
           +TS            +ER++  G L  +   + E               +S I       
Sbjct: 457 LTSIRQTADGCWLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQELKRAR 516

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                  ++  +  ++L  + E    A++ K+ F+ ++S+ELR+PL  I+GF+D++  S 
Sbjct: 517 GSAQQRASEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGFSDIMLQST 576

Query: 599 LGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            G L S++  +Y+  I  S T LL L+NDILD++ ++AG   L+     L  +++E  ++
Sbjct: 577 FGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFSLDCKNTDLEPIISEAVRT 636

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +  E NI +      +L + V D + + QIF  ++SNA+ F+  G  + + A +   
Sbjct: 637 LTPQAQEKNIVVTTNITPELHAEV-DGRAMKQIFLNLISNAVKFTPSGGNIDVCAFKKKN 695

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
           + IF + + G  IP+   K +   F    +       G GLGL+I  S + LH G + I+
Sbjct: 696 NLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAISRSLLELHKGKLEIT 755

Query: 776 SSDEGVTTINCRIPSKE 792
           S +   TT+   +P  +
Sbjct: 756 SKEMKGTTVTIIMPITQ 772



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 88/281 (31%), Gaps = 27/281 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGI 231
           + +   +   +  +    +++ +      D+ +     +G + W+   Y+       + +
Sbjct: 248 VRARKTDLVSEKIQNRIDMAMMRGRCGLWDWNM----ASGRVYWSRAMYEMLGYVPQDAL 303

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--SYKI---VRVLNSF 286
           +    I                   + +K   +    + H +      +I   V      
Sbjct: 304 LSISQISAIINPNDANFFDLAQELMSGKKKHIDINVPMRHADGHYVWMRIRAEVTEEEEP 363

Query: 287 GEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              GI+ D+S++  + +Q         + + N++ +  ++D    L   N  F E   I 
Sbjct: 364 HLVGISFDISEQQQLAEQTAQADLRIRDAIENISESFVLWDSEGRLVMSNSKFCEYAAIP 423

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              L +      +    R A  + E         N+ S+ ++           +G  L +
Sbjct: 424 KQILQSGIQRATVEAMARPA--ISEYPLKDDGTGNLTSIRQT----------ADGCWLKI 471

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                  GG + +  +++     + K+    +     I  L
Sbjct: 472 NERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQEL 512


>gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 587

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 954

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 138/675 (20%), Positives = 250/675 (37%), Gaps = 72/675 (10%)

Query: 169 LSLDGIYSEL-AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            +L  +  +L      +   L    +  + + +    +++ +D  G   + N ++ K   
Sbjct: 154 QALADLNQQLEVRVEERTAALRESEAKLEAMLNFAPAVIYVKDLQGRHTFVNRAFLKLFN 213

Query: 228 TEGIVFQKAIG------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
                    +       E   +F++  +  + S    +     T+    H  N ++   +
Sbjct: 214 CTLADIIGKVNHDFYPPEVADVFEKNDRIVIESCHFHQLEEEVTI----HDQNYTFLSHK 269

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR-YLQF 330
            +        +   GI+ D+++     + L  + E     L  +   +   +    YL  
Sbjct: 270 FILFDQNQQPYALCGISNDITQRKAFYNALQRSQEQLKATLQAIPDLVFRLNSQGEYLAI 329

Query: 331 HNRSFV-ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           +   +V  L +I    LA   S  ELL         P  +  K  +    ++  ++    
Sbjct: 330 YPSEYVGNLVDIK---LAIGHSIKELL---------PPPIAAKYSQVTQTALATNTLQTY 377

Query: 390 DTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQV-------DLETKYNTLVKVQGETI 440
           +   + +G   H  V   P G    +++  +++ Q                         
Sbjct: 378 EQDVVIDGVLRHEEVRVAPCGDHEVVFVIRDISEQQAALRERQKAAATIRKSEDRFARIA 437

Query: 441 DHLSEGVA---VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +++  GV    V  PDG     N  + S    +   L   T  R+ A    R +   D  
Sbjct: 438 NNMP-GVLYQYVLHPDGS---HNFIYISERCQQIFGLDADTITRD-ANELFRLFESEDFI 492

Query: 498 DLFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQ------TMLTFVNVTDSVR 550
            L ++I+ S       S +G L            I  P  Q           V++++   
Sbjct: 493 SLKSSILLSASTLNTWSWEGKLITPFGEKKWIQGISQPEQQPNGDILWDGVVVDISERKL 552

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  L +    L +A  +K+ F+ ++S+ELR+PL  I+G ++ LK   LG+LN  Q   +
Sbjct: 553 MEIKLQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKQGILGTLNPNQHHAI 612

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L++DILDL+ ++AG ++L  + + + +L N     +        I I+
Sbjct: 613 AMIEKSGKHLLELISDILDLSKIEAGKLELYLTEVSVQELCNSSLTLVNHLAFTKQINIE 672

Query: 671 VISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------RDNGDF 719
                +L       D +RL Q+   +LSNA+ F+ K   + L                  
Sbjct: 673 SNIPQQLQKTFIKVDNRRLRQVLINLLSNAVKFTHKAGKINLNVGIKPSTNLAISTPQSI 732

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            FSV +NG  I  D    +F  F         Q  G GLGL++V+  I LHGG V +SS 
Sbjct: 733 YFSVVDNGIGIATDDLDKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQ 792

Query: 778 DEGVTTINCRIPSKE 792
               +     +P  E
Sbjct: 793 LGKGSCFTVYLPYNE 807


>gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105]
 gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105]
          Length = 1085

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 113/532 (21%), Positives = 222/532 (41%), Gaps = 49/532 (9%)

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFVELWE 340
            F   G+ +DV+ +    D L        +      + +A+ D        N++  E+  
Sbjct: 407 PFRMIGVNVDVTVQRQFEDALREAEARFRSSFEWAAIGMAMLDFKGQFLQVNKALSEILG 466

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKT-WKENIFSVYKSSETHKDTWHLPNGQT 399
                     S +ELL F   A   P+     T    ++    + +   +  +   +G  
Sbjct: 467 Y---------SEEELLGFSFDAITHPQDTMQHTHLVRDVLKGRRHNYQLEKRYIHKDGHV 517

Query: 400 LHV----IVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           + V        N +G  I+     ++++ +   E              + L   V+ +  
Sbjct: 518 VWVHLSVSAVRNDKGRVIYFISQIQDISERKRNEATLIEREHFLRTLSECLPGLVSYWST 577

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           D R   +N           +++  G H+R +       ++          ++     E++
Sbjct: 578 DLRCHFANRNHEKWSNIPADKMR-GQHMRKVLGEELFIHDHHY-------VLGVLKGEKQ 629

Query: 513 SLQGTLELLSDSVLEYSIIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKA- 565
             +    L S    +  +  +P+              N+TD    +R L   N  L    
Sbjct: 630 RFERRKPLPSGGYADMLVHLIPDVLYGKVEGFFSISTNITDFKAQQRELERINHVLTDRT 689

Query: 566 ------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                  + K +F+ ++S+E+R+P+  I+G   LL+ +    L ++Q  Y+  I +++ +
Sbjct: 690 QQAEAASKAKGAFLANMSHEIRTPMNAIMGLLQLLEDT---DLQARQRDYLSKIGSAADV 746

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LLN++NDILD++ V+A  ++L++S  +L+ +L++     A +  E  I++    D     
Sbjct: 747 LLNVLNDILDISRVEANKLELSHSRFLLDQVLSKATDLFAYRAEEKAIQLYCSKDANCPV 806

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           S   DR RL QI + +LSNA+ F+ KG   + +++  D     FSVK+ G  + E+ C +
Sbjct: 807 SLKGDRLRLAQILNNLLSNALKFTEKGRIHLQVQSVADGKQLQFSVKDTGIGMNEEQCAA 866

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +F  F  V ++   +  G GLGLSI ++ + L GG + + S+    TT +  
Sbjct: 867 LFQPFSQVDDSSSRRYGGAGLGLSICKNLVELMGGQIWVESTPGLGTTFHFT 918


>gi|163795280|ref|ZP_02189247.1| Sensor protein gacS [alpha proteobacterium BAL199]
 gi|159179266|gb|EDP63797.1| Sensor protein gacS [alpha proteobacterium BAL199]
          Length = 727

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 105/436 (24%), Positives = 196/436 (44%), Gaps = 13/436 (2%)

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPRGGTIWMFE------ 417
           P  ++ + W  +  ++ +        ++    +G+   + ++  P      +F+      
Sbjct: 274 PRGVSDEEWAAHEATLQRREPFKDFRFYRIGADGRRRCLSISGVPVFDEQGLFQGYRGVG 333

Query: 418 -NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +LT  +  E +         + +D  SEG+A +  D R+ + N A+R       + L P
Sbjct: 334 KDLTDLITAEQRVRATNTQLAQALDARSEGLAFWDRDDRLVMCNQAYRDQSGKSGSTLVP 393

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLPN 535
           G    +                   A +    + R++L  T+E+   D  L       P+
Sbjct: 394 GISYEDYIRAGIEAGEVPAAVGREDAWLQERLEVRRNLPYTVEIFRGDRWLLIREQRTPD 453

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             T+LT  ++++  R E AL +  E  + A+  K +F+  +S+ELR+PL  IIGF +++K
Sbjct: 454 GGTLLTATDISELKRREDALVKAVEQAQLANRAKMAFLATMSHELRTPLNAIIGFAEIIK 513

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           + ++ S +  Q +Y  YI  S   LL ++ND+LD++ ++AG + L+     L  L++E  
Sbjct: 514 SGQIASNSDVQGEYAGYIHESGAHLLAVINDLLDVSRIEAGRLVLDEKPFGLASLIDECD 573

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + I  K   + +R+ + +         DR+   QI   +LSNA+ F+  G  V L A RD
Sbjct: 574 RMIRQKAEADGLRLAMATVDPGLGIHGDRRAFKQILINLLSNAVKFTESGGAVTLTAERD 633

Query: 716 -NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
             G     V++ G  +  +    +F  F    N H  +  G GLGL I ++ +  HGG +
Sbjct: 634 AGGRLRMVVRDTGIGVEANRVVELFEPFRQLENVHARRHHGTGLGLYITKNLVEAHGGSI 693

Query: 773 SISSSDEGVTTINCRI 788
              S+    +T+   +
Sbjct: 694 VFESTVHEGSTVTITL 709



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 87/273 (31%), Gaps = 17/273 (6%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-YKKNTETEGIVFQKAIG 238
           +       + +                W +D      + + S ++ ++ T    + K   
Sbjct: 211 QAQRARADVEHASQRLSDFASVSSDWFWEQDAGLRFTYLSPSVWQHSSLTPENHYGKTRS 270

Query: 239 ESRKL-FKEEIKKRMISSSALEKNFCETV--STLEHGNNKSYKIVRVLNSF------GEA 289
           E++     +E      ++    + F +         G  +   I  V          G  
Sbjct: 271 ETQPRGVSDEEWAAHEATLQRREPFKDFRFYRIGADGRRRCLSISGVPVFDEQGLFQGYR 330

Query: 290 GIAID----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G+  D    ++ E  V    T   + L   +  +A +D++  L   N+++ +      + 
Sbjct: 331 GVGKDLTDLITAEQRVRATNTQLAQALDARSEGLAFWDRDDRLVMCNQAYRDQSGKSGST 390

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           L    S ++ +     A ++P  +  +  W +    V ++     + +     + L +  
Sbjct: 391 LVPGISYEDYIRAGIEAGEVPAAVGREDAWLQERLEVRRNLPYTVEIFR--GDRWLLIRE 448

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
              P GGT+    +++     E      V+   
Sbjct: 449 QRTPDGGTLLTATDISELKRREDALVKAVEQAQ 481


>gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 545

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 192 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 238

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 239 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 295

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 296 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 351

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 352 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 410

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 411 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 469

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 470 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 529

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 530 EGTTFTVVLPK 540



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 167 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 224

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 225 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 270

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 271 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 323


>gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 1081

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 160/371 (43%), Gaps = 20/371 (5%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             +  Q  +I+   +G+A+   D   +  N A   ++   E     G   R I       
Sbjct: 568 QEIAKQLASIEAAGDGIAIV-QDDLYQYVNHAHLVMFGYSEPEDLVGHSWRKI------- 619

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNAQTMLTFVNVTD 547
           Y+ ++       +      +R      +    D      E S+    +   +    +++D
Sbjct: 620 YSPTEIQRFENEVFPIVMRDRYWTGEAIATRQDGTSFAEELSLTLTEDNLLICVCRDISD 679

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E  L + N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ ++    G+L  +Q 
Sbjct: 680 RRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGDRQK 739

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q ++ I  S++ LL L+NDILDLA ++AG MKL+ +   +  L       I  +  +  I
Sbjct: 740 QALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGI 799

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDNGDFI 720
            I V     L     D +RL Q+   +L+NA+ F+     + L+          D     
Sbjct: 800 SINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVR 859

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F+V + G  I E+    +F  F         Q  G GLGLS+V+  + +HGG V++ S  
Sbjct: 860 FAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKV 919

Query: 779 EGVTTINCRIP 789
              +     IP
Sbjct: 920 GSGSQFIFEIP 930



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 111/379 (29%), Gaps = 46/379 (12%)

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
           LW N  + ++ E    + Q+++    + F  E +      S +       +     G   
Sbjct: 33  LWKNSLHPEDAELTQAILQESL-RGEREFNPEFRIVRPDGSIVFIKANALIIRNPEGE-- 89

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL------TVAIAIFDQNRYLQ 329
                         G  +D+++              L +L      +  +A+ D +  + 
Sbjct: 90  ---------PQRMIGTNVDITESKQAESDRQQLLRELSDLKLAIDHSAIVAVTDASGVIT 140

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-- 387
           + N  F E+       L            + ++   P       W+          E   
Sbjct: 141 YVNNRFCEISGYSSEELIGKSH------RIVNSRCHPPGFFANLWRTISSGKVWHGEICN 194

Query: 388 -HKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSE 445
             K+        T+   + S+ +         ++T +   E +         +  +    
Sbjct: 195 RSKNGSIYWTESTIVPFLNSHKKVSQYLAIRFDITARKQAEARLLDYSHEIEDLYNKAPC 254

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G      +GR    N                G     +       +   D  ++F +   
Sbjct: 255 GYHSLDAEGRYVKVNDTELQWL---------GYSREQLLGRRLADFLTPDSREIFESNFE 305

Query: 506 SFDDERKSLQGTLELLSDS------VLEYSIIPLPNAQTML---TFVNVTDSVRAERALT 556
            F  +       LE++S +      +L YS +  P  + +    T  ++TD   A+ AL 
Sbjct: 306 LFKQQGYLKDMLLEMISSNGHVFPVLLNYSAVYNPQGEYLYSRSTLFDITDLKSAQIALE 365

Query: 557 EKNEALRKADEIKNSFVQH 575
           + +  L+     ++ F+  
Sbjct: 366 KNHNLLQSITLAQSQFITS 384


>gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
 gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
          Length = 558

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture
            clone pWThLOV]
          Length = 1204

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/788 (17%), Positives = 278/788 (35%), Gaps = 72/788 (9%)

Query: 47   QRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIP 106
            +    A++        +++ +  ++  ++L     L  V D +    +        + +P
Sbjct: 291  EAQRQAREAQALRE--AQLRESEARTAAVLQSLPDLWFVLDAEGRYVQCGTAAQHLLHMP 348

Query: 107  QTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ---NDCAIKIEGR---VS 160
                   S E  L     ++   A ++    G    +  E Q   +      EGR   +S
Sbjct: 349  FEQMRGASLEEVLPPAVAVQHKNALQRALATGTLQRVEYELQPMGDPTTRTFEGRFMPMS 408

Query: 161  GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
            G+   L +  L  + +   E  +  + +    S+   + D              +++ N 
Sbjct: 409  GTQVLLIVRDLTELRTMERELQIMHRAIEGEASLPITVVD-------VLAPDHPVVYVNP 461

Query: 221  SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNN 274
            ++++ T   G    + +G + +  +     +       E       +T+        G+ 
Sbjct: 462  AFERLT---GYGRDEVLGRNCRFLQGPETDQPALGQVREALRHGRSTTVVLHNYRKDGSR 518

Query: 275  KSYKIVRVLNSFGE------AGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQ 324
               ++                G+  D+++     ++L  + E+  +    ++  + +   
Sbjct: 519  FINELHIAPVHDSHGRVTHFIGVQTDITERSIAAERLRVSEELYRSVALSISDGLMVVTS 578

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              Y+   N +   + +  +  L   P  + L E L+        +          +  + 
Sbjct: 579  GSYVVAVNPAACRILDATMEELVMAPGLELLTESLQPLPPAEHPV------ARALASGEP 632

Query: 385  SETHKDTWHLPNGQTLHVIVTSNPRG--------GTIWMFENLTVQVDLETKYNTLVKVQ 436
                       +GQ   + V++ P            +  F ++T Q   E   +   +  
Sbjct: 633  VTERVYGLRRRDGQIRWLGVSAQPLRMAPHDKPLSAVVTFRDITQQRIAEQALSMSEQRW 692

Query: 437  GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               I+   +GV  +         +  ++ L   +E+ L+      +     S   +  D 
Sbjct: 693  KFAIEGSGDGVWDWDAVADRVYYSRRWKELLGYQEHELT------DSPEEWSSRVHPEDL 746

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQT-----MLTFVNVT 546
              +   +     D          L   S     V E   +   N Q      + T+ ++T
Sbjct: 747  PRVLEKLELHLKDVVPVYHSEHRLRHRSGRWLWVFERGRVVQRNEQGRALRIVGTYSDIT 806

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-- 604
                AE+AL    +A   A   K  F+  +S+E+R+PL  +IGF+ LLK S   +  S  
Sbjct: 807  RLKEAEKALR-DKQAAELASRSKTEFLSRMSHEMRTPLNAMIGFSQLLKLSATNAQPSAS 865

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +   Y +++  +   LL L+ND+LDL  V+ G + +N  TI L   + +  + +A   H 
Sbjct: 866  QVRHYADHMLQAGQHLLALINDVLDLQRVETGQLTINIETISLRRTIEQALELLAPLAHA 925

Query: 665  NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSV 723
            + +      D  +    AD QRL Q+   I+SNA+ ++     V L      GD I   +
Sbjct: 926  SAVSFDNRIDEDV-LVRADAQRLRQVLINIISNAIKYNRPDGVVRLTLGDRQGDAIDVLI 984

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            ++ G  +  D    +F  F           G GLGL I +  I+   G + +SS     T
Sbjct: 985  EDTGEGLRPDQLARLFQPFERLGRETSPIEGTGLGLIIAKRLIDEMKGSIEVSSEPGKGT 1044

Query: 783  TIN--CRI 788
             +    R+
Sbjct: 1045 CVTLMVRL 1052



 Score = 74.2 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 56/440 (12%), Positives = 126/440 (28%), Gaps = 48/440 (10%)

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            + ++ R  G      +  +  +  EL +  LK ++     +  +    +    +W  D 
Sbjct: 131 VLDVQPRHFGEAELAALHDVGRLVCELLKARLKEQRWRLQEARVRTASRAGSDWLWETDA 190

Query: 212 AGDILWANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
            G   WA+ S + +T     +  G +  + +             R +++    + F   +
Sbjct: 191 QGRFTWASASMETHTGLRIEDKLGKLPHEILLRRDDPEHARSYDRYLAAREQREPFFNLI 250

Query: 267 ----------------------STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
                                 +    G   + ++V                +E  + + 
Sbjct: 251 ADMRTPGGLVTVAVNGVPVFDSAGRFRGYRGATRVVTAEIEAQRQAREAQALREAQLRES 310

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
              T  +L +L     + D          +   L  +    +    S +E+L        
Sbjct: 311 EARTAAVLQSLPDLWFVLDAEGRYVQCGTAAQHLLHMPFEQMR-GASLEEVLP-----PA 364

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
           +  Q      +       +  E        P  +T             + +  +LT    
Sbjct: 365 VAVQHKNALQRALATGTLQRVEYELQPMGDPTTRTFEGRFMPMSGTQVLLIVRDLTELRT 424

Query: 425 LETKYNTLVK-VQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +E +   + + ++GE    L   V  V  PD  +   NPAF  L     + +        
Sbjct: 425 MERELQIMHRAIEGEA--SLPITVVDVLAPDHPVVYVNPAFERLTGYGRDEV-------- 474

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLELLSDSVLEYSIIPLPNAQTM 539
           +   C               +  +    R +   L    +  S  + E  I P+ ++   
Sbjct: 475 LGRNCRFLQGPETDQPALGQVREALRHGRSTTVVLHNYRKDGSRFINELHIAPVHDSHGR 534

Query: 540 LTFVNVTDSVRAERALTEKN 559
           +T      +   ER++  + 
Sbjct: 535 VTHFIGVQTDITERSIAAER 554


>gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
 gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
          Length = 558

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNA-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
 gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
          Length = 815

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 166/370 (44%), Gaps = 26/370 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----EENRLSPGTHIRNI 483
           + N   +   + ++++ +G+ +     R+ + N     ++K     +E R +     RN+
Sbjct: 339 EVNLEREKMKKILENVGDGLVILDGRKRLSMFNNVAEEIFKLSPEQKEKRCTEVLKCRNL 398

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           +       +E     +    ++    E K   G  E++             N  +     
Sbjct: 399 SGEL--MCSECPLDKMVFQGLSLMQYEMKVWNGEKEIILG----------CNLSSTWEGR 446

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            VT+ + A R ++   E     D +K+ FV +VS+EL++PLT I G+++LL    L    
Sbjct: 447 KVTNFILALRDISLAKEL----DRMKSEFVANVSHELKTPLTAIKGYSELLIKMNLPP-- 500

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K   Y + I   S  L  L+ND+L+++ +++G ++L    + +  ++ E      T+  
Sbjct: 501 EKVRNYYQIIYKESERLTQLINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQTQTS 560

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           ++ I ++          + D  RL Q+F  +L NA+ +S  G  + ++ +    D +  V
Sbjct: 561 KHTIVLQF--PEYPTFILGDNARLAQVFHNLLDNAIKYSPNGGNIWVRVSDKMEDIVIEV 618

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP +    +F+RF            G GLGLSIV+S I  HGG +S++S     
Sbjct: 619 QDQGIGIPPEHLPHIFDRFYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASKVGEG 678

Query: 782 TTINCRIPSK 791
           TT   R+P +
Sbjct: 679 TTFTIRLPRR 688


>gi|160885983|ref|ZP_02066986.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
 gi|156108796|gb|EDO10541.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
          Length = 808

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 123/636 (19%), Positives = 249/636 (39%), Gaps = 43/636 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ + +   ++L       + +        W  +   +I +  + Y      E +    
Sbjct: 45  RDITQRSNVKRRLEQANLTLRAIQKVAQIGQWAYNTNQNI-FHYLGYTGVLCEESVQNL- 102

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKI--------VRVLNS 285
           AI +  +L  EE ++           +   E++S     N + + +         R   S
Sbjct: 103 AIEKYVELIVEEDRQSFREWCRVNERELNMESISYRVRLNGEIFYMRIQTYLREERPDGS 162

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           F   G   +++      + +      ++N   +I     +  + F NR F+    I  + 
Sbjct: 163 FNIEGYIQNITDIQHRRNDINTLTHAINNAKESIFAARPDGTIIFANRRFLHNHGIPES- 221

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---------N 396
                 +   L+    A  +P Q   + W E    V     ++    H            
Sbjct: 222 -----EDISQLKIYNVAADMPTQ---EAWDERCKDVIHGGSSNFVAHHPSKINKGILAYE 273

Query: 397 GQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPD 453
           G   +V  T++    + W F  +++ ++  E +   L ++   TI++L  G+ V     D
Sbjct: 274 GTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINND 331

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R    N    +     +N               +    + D     +     +  E K 
Sbjct: 332 FRYIYRNREAYN-RDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSGKGMHWTVEGKD 390

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G L +L    +      L +   +    +VT+    +R L    E    +D +K++F+
Sbjct: 391 RNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKAEMSDSLKSAFL 450

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL L+N+ILDL+ +
Sbjct: 451 ANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQLINEILDLSKI 507

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G ++ ++    L++L  EV  +   +  +  + +   S  +      D+ R+ Q+ S 
Sbjct: 508 ESGTIEFSFGPASLHNLCREVYDAHIFRTPQ-GVSLVYESSDESLMIETDKNRVFQVISN 566

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA+ F+ +GS +       +   +F V + G+ I  +    VF RF    +  Q  G
Sbjct: 567 LIGNAVKFTKEGS-ISYGYKLVDNQIVFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--G 623

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 624 TGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659


>gi|94499610|ref|ZP_01306147.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
 gi|94428364|gb|EAT13337.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
          Length = 1120

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 113/646 (17%), Positives = 248/646 (38%), Gaps = 58/646 (8%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT------ETEGIVFQKA 236
            + ++L     + + + D +   V+ +D     L  N  + +++      +  G      
Sbjct: 357 RERQRLLEGSDLLRSVLDLIPVGVYWKDDRLRFLGCNKRFLRDSGFESFEDIVGKSDLDM 416

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG---NNKSYKIVRVLNSF-GEAGIA 292
                 +  ++  + +++       F   +  ++       +   +  + +   G  G+ 
Sbjct: 417 PWRDDAIAIQKQDQEVLAGRFDSSPFEGKLIGVDGVSWVQARKMPLKSINDKVLGVLGVY 476

Query: 293 IDVSKEITVNDQL-----------THTYEILHNLTVAIAI--FDQNRYLQ-FHNRSFVEL 338
            D++   +V +QL               +++ +    I    + ++R +   +N  F E 
Sbjct: 477 QDITDYKSVIEQLNSQNSLINESNQKLSQLIDSSPDIIVYREYQEDRLIISVYNHMF-EK 535

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNG 397
           W  DL        + E+L  L       E+ +    +E    +YK+  +  D    L + 
Sbjct: 536 WVGDLTDEKDCVFSKEVLSVL-------EEKDSVVVRELDQVLYKAESSLSDGRRVLLDI 588

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
             + V    N   G +++  ++T   +L++ Y  L  +         +   V    G I 
Sbjct: 589 VKVPVFSDLNIVKGILFIGRDVTETRELQSLYEALFSLTQ-------DPFFVIDEVGAIS 641

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD----LFAAIITSFDDERKS 513
             N A   +   E      G  +  I      Y  + +  +         +    D R  
Sbjct: 642 SCNDAGAQILGLENRTNLIGMRL--IEHFTPEYQPDGERSESKVKRVNESVEKASDARVQ 699

Query: 514 LQGTLELLSDSVLEYSIIPL-----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              T + +  + +   +  +     P  + ++ + ++ D    E +L +      +  + 
Sbjct: 700 FDFTHKDIDGNPIHVRVFIVRLNGGPKKRLLVQWHDIKDMYAREESLRQAKADAEELADQ 759

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  ++G ++LL        + K   Y+  I+ +S  L ++V+DIL
Sbjct: 760 KSMFLANMSHEIRTPLNALVGLSNLL---VANETHVKAQDYMRSINKASIHLKSIVDDIL 816

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRL 687
           D + +DA  + L+   +  ++ L E+K        E  +  +V +      + V D  R 
Sbjct: 817 DFSKIDADRIDLDEIAVNFDEFLCEIKSLHEQSAREKGLHFEVDNRLDNDIAIVIDPVRY 876

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
            QI + ++SNA+ F+ KG  +++   +     + SV + G  + E+   ++F+ F     
Sbjct: 877 RQIINNLVSNAIKFTEKGEVIVVT-KKQQESLLLSVCDTGCGLDENQLSNLFDPFSQADI 935

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +  G GLGLSI +       G +S+SS     +     IP K
Sbjct: 936 TTTRKYGGTGLGLSICKGLAERMSGSISVSSELGKGSCFYVSIPYK 981


>gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 1084

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 117/512 (22%), Positives = 203/512 (39%), Gaps = 46/512 (8%)

Query: 295 VSKEITVNDQLTHTY-EILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSN 352
           V KE+ V          +L NL  A+ +FD +   +  N     ++   +   L   P  
Sbjct: 305 VRKEVLVRRNTEAMLNSLLENLPAAVCLFDSSCRCRKLNAMCASIFGFTEQTALDGVPGT 364

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR- 409
               +F  ++  L E++        +  V +S E           +G+T +   T  P  
Sbjct: 365 ----DFPVASGVLSEKV--------LRDVLESGEPRMFPHSRTDADGKTAYYQTTLVPLR 412

Query: 410 ------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                    + +  ++T Q  LE K +  +    + +     GV +   +G I+ SNP  
Sbjct: 413 KEDEKTDAVLCLSADMTTQKLLEKKLSEQLAFAQKLLKTSPIGVLI-AVEGFIRYSNPRA 471

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R L    E          ++A    +    +         +T    + +  QG    L  
Sbjct: 472 RELMDLREEM--------DVARVYPQLREAAAMLPTLEDTLTDIALKSRDAQGQPHHLR- 522

Query: 524 SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             + Y+      A   +   V+ T +   E+ L    E    A   K+ F+ ++S+E+R+
Sbjct: 523 --VTYTRTEYEGAPGIICWLVDDTQNKELEKQLVLAKEEAETASRAKSDFLANMSHEIRT 580

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  IIG T L   ++   L S+Q  Y+  IS S+  LL +VNDILD + ++AG +++ +
Sbjct: 581 PMNGIIGMTHLTLQTE---LTSRQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEMEH 637

Query: 643 STIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +   L  +L EV         E  +  +  IS         D  RL QI   ++ NA+ F
Sbjct: 638 ADFQLEQVLEEVASIADLSAAEKGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAIKF 697

Query: 702 SSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           +  G   V +   R  G      FSV + G  +  +   ++F  F    +   RR  G G
Sbjct: 698 TQSGHVLVSVTQERHEGSKTRLRFSVSDTGIGMTSEQIGNLFESFTQADNSTTRRYGGTG 757

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           LGL+I +  +NL GG + + S+    +     
Sbjct: 758 LGLAICKRLVNLMGGEIHVRSTPGHGSDFIFT 789


>gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter
           bemidjiensis Bem]
 gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache,
           HAMP, PAS, PAC, PAS and HPT domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 1229

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 108/568 (19%), Positives = 214/568 (37%), Gaps = 42/568 (7%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAID--VSKEITVNDQLTHT 308
           M   ++    F   V  +     +   + +   +  G   +A +  V +           
Sbjct: 307 MRRLTSPLLTFIGHVQGMGDQERELEPVAISTGDEIGTLALAFNRMVQELQRQRTAAREL 366

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPE 367
              +    V + I D    +++ N +F ++        L  +P        +      PE
Sbjct: 367 RLAIDQAPVTVMITDPQGGIEYVNPNFTKVTGYQPEDALGRDP------REIIGTGCYPE 420

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH--VIVTS--NPRGGT---IWMFENLT 420
           +   + W           E         +G+     V ++   +PRG     + + E++T
Sbjct: 421 EFYEELWGTLRSGKEWHGEIRNK---RKSGELYWESVSISPVKSPRGEINNFVGVMEDIT 477

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   E       +     ++  +E +      G    +NP+   L    +     G ++
Sbjct: 478 QRKRAEEALIRSDEQIRLLLESTAEAIFGIDLMGNCTFANPSCARLLGHADPDQLLGKNM 537

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ- 537
             +    +     +   +  A  +    +              S   +EY   P  +   
Sbjct: 538 HLLMHHTTSEGKPNPVQECAAYQVLRGGEGVHKDDDVFWRRDGSSFAVEYWSYPQLHDGE 597

Query: 538 ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               ++TF ++++  RAE  L    EA   A   K+ F+ ++S+E+R+P+   +G   LL
Sbjct: 598 LVGGVVTFFDISERKRAEAELIRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLL 657

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + ++   L+  Q  Y+E    +S +LL ++NDILD + V+AG M L  +   +  +L+++
Sbjct: 658 QHTE---LSETQKSYLEKAQTASGVLLGVINDILDFSKVEAGRMVLETTPFRMAAVLSDL 714

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +      + E  I         +      D  RL Q+   + SNA+ F+ KG  V ++ A
Sbjct: 715 QTVAQATLREKPIEFVTRCGADIPEQLFGDPLRLGQVLLNLASNAIKFTEKG-KVEVEVA 773

Query: 714 ---RDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
              ++ G+    FSV + G  +  +  +SVF  F        R   G GLGL+I    + 
Sbjct: 774 LLAQEQGEVTLRFSVADTGIGMTTEQQESVFTPFTQADSSTTRKYGGTGLGLAISRELVQ 833

Query: 767 LHGGHVSISSSDEGVTTINCR----IPS 790
           L GG + + S     +T +      +P+
Sbjct: 834 LMGGRMWVVSEPGRGSTFSFIAHLALPA 861



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 34/286 (11%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--- 226
            +  +         + ++        ++  D     V   D  G I + N ++ K T   
Sbjct: 341 EIGTLALAFNRMVQELQRQRTAARELRLAIDQAPVTVMITDPQGGIEYVNPNFTKVTGYQ 400

Query: 227 --ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-ETVSTLEHGNNKS--YKIVR 281
             +  G   ++ IG     + EE  + +  +    K +  E  +  + G        I  
Sbjct: 401 PEDALGRDPREIIGTG--CYPEEFYEELWGTLRSGKEWHGEIRNKRKSGELYWESVSISP 458

Query: 282 VLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFDQN--RYLQFHNR 333
           V +  GE     G+  D+++     + L  + E +  L  + A AIF  +      F N 
Sbjct: 459 VKSPRGEINNFVGVMEDITQRKRAEEALIRSDEQIRLLLESTAEAIFGIDLMGNCTFANP 518

Query: 334 SFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--- 389
           S   L    D   L     +      L   +   E       +   + V +  E      
Sbjct: 519 SCARLLGHADPDQLLGKNMH------LLMHHTTSEGKPNPVQECAAYQVLRGGEGVHKDD 572

Query: 390 DTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKY 429
           D +   +G +  V   S P+       G +  F +++ +   E + 
Sbjct: 573 DVFWRRDGSSFAVEYWSYPQLHDGELVGGVVTFFDISERKRAEAEL 618


>gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
           DSM 2228]
          Length = 921

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 100/466 (21%), Positives = 189/466 (40%), Gaps = 58/466 (12%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTL----HVIVTS--------------NPRGGT 412
           +++W E+I+   +   + K    + NGQ       +I  S              N  G T
Sbjct: 179 YQSWTEHIYIKDRKETSSKFKKAVANGQIFDHEFRIITKSGTFKYIKSFGKPVKNAEGKT 238

Query: 413 ---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR--IKLSNPAFRSLW 467
              I +  ++T +   E K+           D    G+A+  P     ++ +N     L 
Sbjct: 239 KEVIGVNYDITERKKYEKKFKR-------IFDESLFGLALINPRTTKAVEFNNTVCELLG 291

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSV 525
            T E        I +  A             L       F+ +     G+L   L+  S 
Sbjct: 292 YTREEFAQLK--IEDYEALADPSSIRFKLEKLAEGEKLKFETKHIKKDGSLIDVLIKASS 349

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAER----------ALTEKNEALRKADEIKNSFVQH 575
           +  + + L     +     V    + E            L +  +   +A   K+ F+  
Sbjct: 350 INLNGLNLVQIVYVDITEKVEALNKMEEYSNELKLKNLELKQARDKAMEASRAKSEFLST 409

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+ +IIG  +LL+ ++   L+ +Q +Y+     +   LL L+NDILDL+ ++A
Sbjct: 410 MSHEIRTPMNSIIGMAELLQETE---LSEQQQKYINIFQNAGESLLTLINDILDLSKIEA 466

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKI 694
           G ++L      L + +  + + I+ +  +  + + +    ++    + D +R+ QI   +
Sbjct: 467 GRIELEAEKFNLVETVENIAEMISLRAFKKGLELPLRIAAEVPECVIGDSERIRQILINL 526

Query: 695 LSNAMDFSSKGSTVILKAA-------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           L NA+ F+ KG  V L          +D    IF++K+ G  I +   K +F+ F     
Sbjct: 527 LGNAVKFTEKG-QVFLDLRIDSEFKSKDQKQVIFAIKDTGIGIEKAKQKQIFDSFTQADS 585

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              R   G GLGL+I +  + L GG + + S+ +  +T    +P K
Sbjct: 586 SSTRKYGGTGLGLTISKQLVELMGGKIWLKSTPQLGSTFYFSLPLK 631


>gi|186681745|ref|YP_001864941.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464197|gb|ACC79998.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 659

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 109/501 (21%), Positives = 209/501 (41%), Gaps = 21/501 (4%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           SKEI +   L+     L +  + I   +    +   N+ FV++W+I  + + +       
Sbjct: 160 SKEIELEASLSLLRSTLESTAIGIVAVNSEGDILSLNQKFVDMWQIPESLILSKKC-PRC 218

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG---- 411
             F  +  K P+  N   W+ +  S ++S     D   L +G+        +   G    
Sbjct: 219 KAFFENKLKDPQAFNRLIWEVSSQSDFES----YDILELKDGRVFAHYSKPHLLDGKIIG 274

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +W   ++T     E     L  V+  T+   ++         R+   NPA   L    +
Sbjct: 275 RVWSIWDITESKQTEEALR-LNAVRFRTLAETTDTSTFLIQGTRLCYINPAVEQLTGYTK 333

Query: 472 NRLSPGTHIRNIAATCSRYY----NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             L  G  +R +  +  R      +E+  ++     I +     + L   + +L D VL+
Sbjct: 334 EELLTGFDLRRLIKSKRRRQVRKQSEATNFEYQEMNILTKSGTERWLACAVVML-DGVLD 392

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +   P+     M+  +++TD   AE  L +  E  ++  E++  F+  V ++ R+PL  +
Sbjct: 393 FGGKPVE----MIAGIDITDYKYAELGLNQALEQAKQLSELRARFLSMVCHQFRTPLNIV 448

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
                LLK         K    +++I  ++  L  +++DIL  +  +A  +      + L
Sbjct: 449 SFSNSLLKEEVDKRTQKKIQPLLDHIQKATEQLGQMLDDILFFSKAEAEKINYEPKPLEL 508

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            D  N++   +   + +  IRI  ++     +   D++ L  I   +L NA+ +S  G T
Sbjct: 509 VDFCNDLVAEMQMTISK--IRINFVTQENSLTACIDKKLLEPILKNLLDNAIKYSPSGIT 566

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           V L+ + +N   IF V++ G  I     + +F  F    +  +  G GLGLSI+++ ++L
Sbjct: 567 VDLRLSCENEQLIFQVEDRGIGISALDQQRIFEPFYRGTNIDRIPGTGLGLSILKTLVDL 626

Query: 768 HGGHVSISSSDEGVTTINCRI 788
           H G VS+ S     TT    +
Sbjct: 627 HHGQVSVESQLGVGTTFTVTL 647



 Score = 41.5 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 94/276 (34%), Gaps = 27/276 (9%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF----- 358
           ++   + +++    A     +N    + N +   + E     L +    D  ++F     
Sbjct: 22  EMKFAHFLINQAVDAAFCLGENAQFLYVNDATCRMTEYSREELLSMRLQDIDVDFSLHNW 81

Query: 359 --LRSANKLPEQLNWKTWKENIFSVYKSSETHKD---------TWHLPNGQTLHVIVTSN 407
             + S   L  +  ++T +  IF V  S    K             + + + + + V   
Sbjct: 82  SNINSEGSLTFKSRYRTKRGRIFLVEISISYVKQQDIEFGCAFVREISD-EIVELSVQKW 140

Query: 408 PRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             G       + +  +     E +    + +   T++  + G+     +G I   N  F 
Sbjct: 141 TDGLRDAKDNLQQEFSQLKSKEIELEASLSLLRSTLESTAIGIVAVNSEGDILSLNQKFV 200

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            +W+  E+ +      R  A   ++  +      L   + +  D E   +   LEL    
Sbjct: 201 DMWQIPESLILSKKCPRCKAFFENKLKDPQAFNRLIWEVSSQSDFESYDI---LELKDGR 257

Query: 525 VL-EYSIIPLPNA---QTMLTFVNVTDSVRAERALT 556
           V   YS   L +      + +  ++T+S + E AL 
Sbjct: 258 VFAHYSKPHLLDGKIIGRVWSIWDITESKQTEEALR 293


>gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1260

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 179/392 (45%), Gaps = 20/392 (5%)

Query: 415 MFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           ++++L  +VD  T+  N          D+   G++V   D ++  +N  F +++      
Sbjct: 230 LYKSLEEKVDARTEDLNNAYHELQAIFDNSLVGISVLSSDHKVIRANRRFATIFGYSVAE 289

Query: 474 LSPGTHIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +   +  + +++      ++E     L    I   + + +   G++     S        
Sbjct: 290 IPLISPEKFHVSGRNFDEFSEKFFNRLAEREIAQLEYQFRRKDGSVFWSQVSAKAIDPQD 349

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLT 585
           L     +    +++D  +A   L +  E LR       KA   K+ F+  +S+E+R+P+ 
Sbjct: 350 LSRG-VIFVIEDISDRKKASELLRQHAEDLRVAKDQADKATRSKSEFLARMSHEIRTPMN 408

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G  ++L+ +   SLN  Q +YV+  S++  +LL ++NDILD + ++ G +KL     
Sbjct: 409 AILGMAEMLQET---SLNEDQQEYVKTFSSAGELLLGIINDILDFSKIEVGQIKLESIPF 465

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L +L+++V +    +  E  +R++  +S+G    ++ D  R+ QI   ++ NA+ F+S 
Sbjct: 466 NLRELVDDVNKLFVYRAEEKALRLEKKVSEGLAQRYIGDPTRIRQIIINLVGNALKFTSV 525

Query: 705 GST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           G     V      D     +F+VK+ G  IP+    +VF  F        R   G GLGL
Sbjct: 526 GGVTMSVTESVMDDGAPCCLFAVKDTGIGIPKSKLGTVFESFAQADSSTTREFGGTGLGL 585

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I +  + L GG + + S     TT   ++P 
Sbjct: 586 AISKKLVELMGGQIWVESEPGQGTTFFFKLPL 617



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 20/158 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL-ATNPSNDE 354
           ++   +N+       I  N  V I++   +  +   NR F  ++   +A +   +P    
Sbjct: 240 ARTEDLNNAYHELQAIFDNSLVGISVLSSDHKVIRANRRFATIFGYSVAEIPLISPEKFH 299

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNPRG-- 410
           +              N+  + E  F+     E    +  +   +G      V++      
Sbjct: 300 VSGR-----------NFDEFSEKFFNRLAEREIAQLEYQFRRKDGSVFWSQVSAKAIDPQ 348

Query: 411 ----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
               G I++ E+++ +           +      D   
Sbjct: 349 DLSRGVIFVIEDISDRKKASELLRQHAEDLRVAKDQAD 386


>gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
 gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
          Length = 558

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|288935843|ref|YP_003439902.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288890552|gb|ADC58870.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 895

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 206/495 (41%), Gaps = 27/495 (5%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L+ L  A+ I+D+   LQ  N      +     +LA     + L E    A    +    
Sbjct: 9   LNVLPSAVMIYDERERLQAWNDKVARFYPAIAPWLAVGAPLESLAEKFIDAGYNIDPGRQ 68

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +T +E I    + +  H +     N + ++V       GG + +  ++T   +     + 
Sbjct: 69  QTLRETIIRNCRQT-NHCEVRQSGN-RRIYVQHQRLADGGIVSLHTDITELDEARRARHQ 126

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L      T + +  G+  +         N    ++      +                  
Sbjct: 127 LHDDFLFTAESIQIGIWDWQVSHDNLQVNDTLLAMVGQSRTQWRYPLRFM------LNLV 180

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLE-----------LLSDSVLEYSIIPLPNAQTML 540
           +E D   L  A+I+S ++     +  L            LLS  ++  ++      + + 
Sbjct: 181 HEDDRTTLQQAMISSQNEHMPVFECELRVQHPTQGWRWMLLSGQIVTLNMQQQAE-RVIG 239

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T    AE    E  +  R+A+E K++F+ ++S+E+R+P+  I+G   L   +   
Sbjct: 240 TLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMAQLCLDT--- 296

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q +Y+  + +S+  LL+++NDILD + +++G M+++   + +   +  + +    
Sbjct: 297 PLTAEQREYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMP 356

Query: 661 KMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
              E  I + V     +    + D  RL QI + +L NA+ F+ +G  ++ +  A D   
Sbjct: 357 AASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESR 416

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + F +++ G  I  +  K++F  F        RR  G GLGL+I    ++L GG +++ S
Sbjct: 417 WRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVDS 476

Query: 777 SDEGVTTINCRIPSK 791
                +     +P +
Sbjct: 477 QPGAGSEFAFTLPLE 491


>gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
 gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
          Length = 558

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1]
 gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 1616

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 127/672 (18%), Positives = 246/672 (36%), Gaps = 77/672 (11%)

Query: 172  DGIYSELAETTLKCKKLSNHISV-------------FKVLFDSLDFLVWH--RDQAGDIL 216
                 E A TTL+ + L     +              + + DSL    +      +GD  
Sbjct: 458  STTRLEEANTTLEARVLERTEELEHSKSTAEWSRQLMRDMADSLPCAAFRFEVAPSGDQS 517

Query: 217  WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS-ALEKNFCETVSTLE----- 270
            +  IS  K  E  G    + I E    F       +  +  ALE+   E  ST +     
Sbjct: 518  FRFIS-AKAEEIWGYTPDELINEPDLRFWRIHPGDLAKAHQALEEALLEGSSTNQLYRVM 576

Query: 271  --HGNNKSYKIVRVLNSFGEA-----GIAIDVSKEITVNDQLTHTYE----ILHNLTVAI 319
              HG  +  +   + +   +      G  +DV++       +T   E    I  +  + I
Sbjct: 577  NRHGEARWIETRAMASRLADGTRVWNGYWLDVTEREEALAAMTGAMEEQSAIFQSAGLGI 636

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
            A+  ++R++   N+S  +L     + L    +                + +++      +
Sbjct: 637  AVI-RDRHIVRSNKSLAQLLGYGPSELDGQSTGVVFAN----------EGDFERMGREAY 685

Query: 380  SVYKSSETHKDTW--HLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNT 431
                  ET +  W     NG T     +           G++W+ +++T + + E +   
Sbjct: 686  PALAQGETFQGDWEYRRKNGTTFWGRTSGRAIDSGDLSKGSVWVCDDITDRRNWEHRLQQ 745

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
              +      + +   V     +G        F   +   + R   G     + A   R Y
Sbjct: 746  AEERLRALTNSVPAAVFELRNEG------EDFWFTFMGRQVRGILGVGADQLLANAGRLY 799

Query: 492  N--ESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSVLEYSIIPLPNAQTMLTFVNVT 546
                    +   ++I    ++         L     +  +    +P+       T+    
Sbjct: 800  GTVRDGDRETLESVIEGALEQGVRFSTQYRLDAPGEERWVRMEAVPIVAQAGGGTWAGFF 859

Query: 547  DSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
              V AE+    ALT   E    A  +K+ F+ ++S+E+R+P+  IIG + L   ++   L
Sbjct: 860  QDVSAEKLAEAALTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTE---L 916

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              +Q  YV+ I ++   LL ++NDILD + ++AG + + ++   L+ +L+ +   +  K 
Sbjct: 917  TPRQHDYVKKIQSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKT 976

Query: 663  HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
               ++ +      ++  + V D  RL QI     +NA+ F+  G   I+   ++  +   
Sbjct: 977  RAKSLELVFDIPSEVPRTLVGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSETEV 1036

Query: 719  -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
               F+V++ G  I  +    +F  F        R   G GLGL+I +    L GG V + 
Sbjct: 1037 LLYFAVRDTGIGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVE 1096

Query: 776  SSDEGVTTINCR 787
            S     +T    
Sbjct: 1097 SEYGKGSTFWFT 1108


>gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 932

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 130/651 (19%), Positives = 243/651 (37%), Gaps = 59/651 (9%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++ +     + L N    F+ + + +  +V+  D +G I + + + +K T+ +     + 
Sbjct: 159 DITKRKQAEQALQNSEKKFRSITEQMSEIVFITDSSGQISFISPAIEKITDYK---PHEV 215

Query: 237 IGESR-KLFKEEIKKRMISSSALEKNFCETVSTLE-----------HGNNKSYKIVRVLN 284
           IG+       EE     +S+         T   +             G            
Sbjct: 216 IGQRFTDFLSEEEVPSALSAYKEVMLKQSTTHVIVLKFMRKNGTFFFGEVHVQYYHE-SG 274

Query: 285 SFGEAGIAIDVSK-----------EITVNDQLTHTYEILHNLTVAIAIFD--QNR--YLQ 329
             G  G+  D+S+           E  + D       I   +  ++ + D   +     +
Sbjct: 275 YSGTIGVIHDISERNRCERTRIEYEKKLLDGKQFLQNIYDTVNHSVFVIDVLPDGSYRYK 334

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             NR       +    ++   S  E+LE        P+     T   +   ++K S T  
Sbjct: 335 SINRLHEIRTGLKNEAISGK-SPREVLE--------PDVAATVTGYYDRC-IHKGSSTEY 384

Query: 390 DTWHLPNGQTLHVIVTSNP---RGGTIWMF----ENLTVQVDLETKYNTLVKVQGETIDH 442
           +  H+  G+        NP     G I+       N+T     E K  TL       I  
Sbjct: 385 EETHMFKGKLSWWRTILNPVRNDSGHIYRIIGTSTNITEHKLTEEKLKTLSF----AIQQ 440

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
               V +  P+G I+  NP F       E  +         +        E     + A 
Sbjct: 441 SPTVVVITDPEGNIEYINPTFTEHTGYTEKEVIGQNPRILKSGLMEDSVYEEFWKTILAG 500

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            +   +   K   G L      V             +    ++T+  +    L    E  
Sbjct: 501 NVWHGEFHNKKKNGELYWEDAIVSAIVNQKGVITNFVAVKEDITEKKKLWVDLIASKEKA 560

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            ++D +K +F+ ++S+E+R+P+  I+GF +LLK   L     +Q++Y+E I+ S   +L 
Sbjct: 561 EESDRLKTAFLANISHEIRTPMNGILGFAELLKEPHLSG--EEQAEYIELINQSGKRMLA 618

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSF 680
           L+NDI+D++ ++AG   ++     +N LL+ +           N+ +        +    
Sbjct: 619 LINDIVDISRIEAGETMIHVEPTHVNKLLHSLCTFFRPLAANKNLLLSCNNGLSDEECVI 678

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  +L QI + ++ N + FS +G  V +   R      FSV ++G  IPE M +S+F 
Sbjct: 679 ETDSAKLTQILTNLVQNGLKFSVEGE-VRVGYIRKEDLLEFSVSDSGIGIPESMKESIFE 737

Query: 741 RFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RF    +       G GLGLSI ++++ + GG + + S +   +T    +P
Sbjct: 738 RFRQVDNSLTRHHEGSGLGLSISKAYVEMLGGTIRVESGEGNGSTFIFTLP 788



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 71/204 (34%), Gaps = 2/204 (0%)

Query: 376 ENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           EN F V +S    K + +  P  +     +    +G T+ +F+++T +   E       K
Sbjct: 116 ENHFRVVESGIAEKFEIYIEPLHKWYESTIYCPEKGYTVAIFDDITKRKQAEQALQNSEK 175

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 + +SE V +    G+I   +PA   +   + + +  G    +  +        S
Sbjct: 176 KFRSITEQMSEIVFITDSSGQISFISPAIEKITDYKPHEV-IGQRFTDFLSEEEVPSALS 234

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
              ++     T+     K ++         V          + T+    ++++  R ER 
Sbjct: 235 AYKEVMLKQSTTHVIVLKFMRKNGTFFFGEVHVQYYHESGYSGTIGVIHDISERNRCERT 294

Query: 555 LTEKNEALRKADEIKNSFVQHVSY 578
             E  + L    +   +    V++
Sbjct: 295 RIEYEKKLLDGKQFLQNIYDTVNH 318


>gi|148657870|ref|YP_001278075.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148569980|gb|ABQ92125.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 1039

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 123/697 (17%), Positives = 254/697 (36%), Gaps = 77/697 (11%)

Query: 150  DCAIKIEGRVSG----SCAFLRILSLDGIYSELAETTLK-----------CKKLSNHISV 194
               +++ G   G    + A  R         +L     +              L      
Sbjct: 344  GAPVRMRGVTVGTLCFASATSRQTPFTDGDYDLIRLMAQWIGSEQERLQTEAALRESEER 403

Query: 195  FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMI 253
            F +L       V    + G I+ AN +    +   G   ++  G S  +    E ++++ 
Sbjct: 404  FALLASVTTEGV-IISEQGIIVDANAA---ASTLLGCPLEQLRGRSVFEFTTPEGREKVA 459

Query: 254  SSSALEKN-FCETVSTLEHGNNKSYKIVRVLNSF----GEAGIAIDVSKEITVNDQLTHT 308
             + A   +   E ++    G     ++      +           D+S++      L  +
Sbjct: 460  HALATGYDCPYEVLARRIDGTLFPAEVTGRNIPYHGRTARVTTIRDMSRQRLAEAALRAS 519

Query: 309  YEILHNLTVAIAI-----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
             E    L   +             + + N ++  +W      L   P+   L E +    
Sbjct: 520  EERFRQLAENVNQVFWICTPALDQILYVNPAYERIWGRSCDSLYAQPA--SLFEAIVLE- 576

Query: 364  KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIW----MF 416
                  + +       + Y    + +      +GQ   ++  + P     G I+    + 
Sbjct: 577  ------DRERVLALHNAEYHRGYSIEFQIRRDDGQPRWILTRAFPVMNEAGVIYRIAAIS 630

Query: 417  ENLTVQVDLETKYNTLVKV--------------QGETIDHLSEGVAVFGPDGRIKLSNPA 462
            E++T +   E +    +                    +D  SE +A+  PDG     N  
Sbjct: 631  EDVTGRRQAEEELRATLAALEAQYQAADRAQSEMRAILDASSEAIALLAPDGTFLTVNRR 690

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            F  ++ T   + + G  + ++ A     ++++D  +L+  +  +  D +   +  +    
Sbjct: 691  FFDMFGTTAEQ-ALGHRLSDMRAAIRWIFDDAD--ELYVRMCHALQDTQTIFRERVSQRK 747

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                E +I   P      T +      R            R  + +K+ FV  VS+ELR+
Sbjct: 748  PQQRELAIFSSPVWTANQTHLGRLFVFR-------DVTHERAVERMKSEFVAMVSHELRT 800

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PLT+I G+ D+L     G L  +  + +  + +++  LL L+ND+LD++ ++AG + L+ 
Sbjct: 801  PLTSIKGYVDMLLDGDAGPLADEHQELLRIVKSNADRLLLLINDLLDMSRIEAGKLSLHR 860

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVI-----SDGKLGSFVADRQRLLQIFSKILSN 697
              + L  L+ +V  ++   +     R+ +       DG       D  R  QI + +LSN
Sbjct: 861  IPLDLRPLIRQVAATMRPHLDAKQQRLTLDLPETPPDGSAPLIAGDAARFHQILTNLLSN 920

Query: 698  AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
            A+ ++     + ++   +      +V++ G  +  +    +F+RF    +R  R   G G
Sbjct: 921  AIKYTPPNGEMTIRLTAEPPWLCITVQDTGIGMTPEEQDHIFDRFYRARNRATRETGGTG 980

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            LGL+I  S + LH G +++ S     +T    +P  E
Sbjct: 981  LGLAITRSLVELHDGRITVESQPGKGSTFRVYVPLLE 1017


>gi|320106380|ref|YP_004181970.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319924901|gb|ADV81976.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 791

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 131/658 (19%), Positives = 245/658 (37%), Gaps = 61/658 (9%)

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
            A +R++  +    +  E+ L  ++     +    + ++   LV   D AG ++  N + 
Sbjct: 160 QARVRLMDNESRVRQRVESALTVER-----NFVSAVLETAGALVVVMDTAGRVVRFNRAC 214

Query: 223 KKNTETEGIVFQKAIGESRK--LFKEEIKKRMISSSALEKNFCETVS------TLEHGNN 274
           +      G   ++ +G      L  EE +     +    ++    VS          G  
Sbjct: 215 E---AISGFATREIVGRYLWETLIPEEDRAEANRAFETIRSGSFPVSFEDRWKVRGGGLR 271

Query: 275 KSYKIVRVLNSFG-----EAGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQN 325
           +       L              IDV+ +    D L  +      L       +      
Sbjct: 272 RIQWTATALMDAQNELNFVIATGIDVTLQRVAEDTLRQSEAQYRQLVEGSLGVVFTHTPK 331

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             L   N    E     +  +        L +F+   +     + +  + E +    ++ 
Sbjct: 332 GRLISLNTYGAESLGYGIEEMLGR----SLTDFMPDEDF----VAFDAYLEKMRKTGEAQ 383

Query: 386 ETHKDTWHLPNGQTLHVIVT-SNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETID 441
            T          +TL        P G     +    ++T +V  E   + L       +D
Sbjct: 384 GTFCLLHRNGERRTLAYRNRLIAPEGRDRFVLGFGVDITEKVRAEESLSALTLQSNSILD 443

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            + +G+     DG   + NPA  S+     + +      R I+        +   +    
Sbjct: 444 SVGDGIFATSLDGVATVVNPAAASMLGYGTHEILG----RKISDLLRLTRADGTEYADDE 499

Query: 502 AIITSFDDERKSLQGTLELL-----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           + I     +R++++ + +L      S   +EY   P+         V         RAL 
Sbjct: 500 SPIERSLHQREAVRASTDLFWRKDGSSFPVEYVACPIVKDGRATGIVVAFTDTTERRAL- 558

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                    D++K+ F+  VS+ELR+PLT++     L+ +  L S   KQ Q +E    +
Sbjct: 559 ---------DKMKDEFISTVSHELRTPLTSMRASLGLIASGALASRPEKQKQMLEIAIGN 609

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L++LVNDIL+L  + +G  +L+ +    +DL       +     +  I+ ++ + G 
Sbjct: 610 TERLVSLVNDILELERIGSGKAELHSTLSSADDLFRRATGLLTGTAAKAGIKFEIEARG- 668

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMC 735
             +   D  R+LQ  + +LSNA+ FS +G  + L+A      +    V ++G  IP D  
Sbjct: 669 -VNVWGDPDRILQTITNLLSNAIKFSPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKL 727

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +S+F RF        R   G GLGL+I  S ++ HGGH+   S     +T    +P+K
Sbjct: 728 ESIFERFQQVDASDSRAMGGTGLGLAICRSIVSQHGGHIWAESKYGRGSTFFFTLPTK 785


>gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 580

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 159/383 (41%), Gaps = 11/383 (2%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENR 473
           +   +  +   E       +      +  S+G+      D +  + N A   +    E+ 
Sbjct: 202 LINEINERRQAEECLKESEQRFRTIFESNSDGLIAIRIEDHKFYMCNRAICRMLGYREDE 261

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L     +R   A             LF   +       + L    +  S    + +I P+
Sbjct: 262 L-----LRLSIADIHPEDKLPRAIRLFERELQGEISVAEELPVQRKDGSVFYADVNISPI 316

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKAD--EIKNSFVQHVSYELRSPLTNIIGFT 591
                        D     +    +   L   +    K+ F+ ++S+ELR+PL ++IGF+
Sbjct: 317 ILYGKPHLIGAFRDVTERRKLRESEIARLAAEEACRTKSDFLANMSHELRTPLNSVIGFS 376

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L+    G +N KQ +YV  I  S   LL+L+NDILDL+ V++G M+L  S   L D+L
Sbjct: 377 EVLQDELYGPMNEKQREYVNNIHISGRHLLSLINDILDLSKVESGKMELELSAFSLRDML 436

Query: 652 NEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            +       K   + + I +  D +   + +AD+++L QI   +LSNA+ F+  G T+ +
Sbjct: 437 GDSLAMFKEKALRSAVGIHLEFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGTLQV 496

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            A R       +V + G  I       +F  F        +   G GLGL++ +  + LH
Sbjct: 497 SARRMPDFVEIAVADTGIGIKAQDIPKLFKPFTQLGSVYTKGFEGTGLGLALSKRLVELH 556

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG + + S     +  +  IP K
Sbjct: 557 GGRIRVKSKFGTGSRFSFTIPLK 579



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 48/162 (29%), Gaps = 23/162 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVA-IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             E  + +       I  + +   IAI  ++      NR+   +       L        
Sbjct: 211 QAEECLKESEQRFRTIFESNSDGLIAIRIEDHKFYMCNRAICRMLGYREDELL------- 263

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLHVIVTSNPRG--- 410
               L  A+  PE    +  +     +  + S   +      +G   +  V  +P     
Sbjct: 264 ---RLSIADIHPEDKLPRAIRLFERELQGEISVAEELPVQRKDGSVFYADVNISPIILYG 320

Query: 411 --GTIWMFENLTVQVDLETKYNTLV------KVQGETIDHLS 444
               I  F ++T +  L       +      + + + + ++S
Sbjct: 321 KPHLIGAFRDVTERRKLRESEIARLAAEEACRTKSDFLANMS 362


>gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 1236

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/501 (20%), Positives = 199/501 (39%), Gaps = 29/501 (5%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL-----LEFL 359
                 ++ ++  AI   D+       N+S   +       +    S++ +     L   
Sbjct: 457 FALLRSLIDSIPEAIVFKDKEGKYLGCNKSAERMLGYTENEIIGLTSSEVVSPEQGLRIG 516

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
              NK+  Q +   ++E +    +      DT+ LP               G I ++ ++
Sbjct: 517 EEDNKVLTQQHSLRYQERV--NIEGKPVLLDTFKLP------FYNRRGDLLGLISVWRDI 568

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-T 478
           T + +   +     +     +D + +G+  +  D    + NPAF S+   + N   P   
Sbjct: 569 TREYEAAEQLRMSEQRYHLAMDAVEDGLWDWYIDSEQIICNPAFYSMLGYQANEFPPLLE 628

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT----LELLSDSVLEYSIIPLP 534
            I  +     R   +          + +++ E +           L     +E+S     
Sbjct: 629 SIDELYHPDDRERVQEYRAQYVRDPVGTYEIEFRMRGKNGLYFWVLSRGRAVEFSEDGC- 687

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + + + T  ++T     E AL E  +    A+  K+ F+ ++S+E+R+P+  IIG   L 
Sbjct: 688 SKRMLGTHKDITRQKSNEVALLEAKQDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLA 747

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +   SL  +Q  Y+     S+  LL ++NDILD + ++AG ++L      L+ +L+ V
Sbjct: 748 QRT---SLTVQQQDYLNKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHV 804

Query: 655 KQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709
               A K  E  + + + +    G     D  RL Q+   +LSNA+ F+  G   +    
Sbjct: 805 IDINAIKAQEKGVELLLYAPVTAGLILYGDPLRLGQVIVNLLSNAVKFTQTGEVELGCED 864

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           +    D     F V++ G  I +D    +F+ F        R   G GLGLSI +  +++
Sbjct: 865 VGERDDRITMKFWVRDTGIGISKDQQAMLFDAFSQADGSTTRKYGGTGLGLSISKHLVSM 924

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG + + S     +  +  I
Sbjct: 925 MGGTMQVESELGSGSIFSFTI 945



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 93/297 (31%), Gaps = 30/297 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+ +L    ++        ++     ++ + L DS+   +  +D+ G  L  N S ++  
Sbjct: 434 RLDNLVARRTQ--RLRETTERREREFALLRSLIDSIPEAIVFKDKEGKYLGCNKSAERML 491

Query: 227 -----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
                E  G+   + +   + L    I +        + +          G        +
Sbjct: 492 GYTENEIIGLTSSEVVSPEQGL---RIGEEDNKVLTQQHSLRYQERVNIEGKPVLLDTFK 548

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFD--QNRYLQFH 331
           +       +  G   +  D+++E    +QL  + +  H    A+   ++D   +      
Sbjct: 549 LPFYNRRGDLLGLISVWRDITREYEAAEQLRMSEQRYHLAMDAVEDGLWDWYIDSEQIIC 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-- 389
           N +F  +           P  + + E     ++   Q     +  +    Y+     +  
Sbjct: 609 NPAFYSMLGYQANEFP--PLLESIDELYHPDDRERVQEYRAQYVRDPVGTYEIEFRMRGK 666

Query: 390 ---DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                W L  G+ +        +   +   +++T Q   E     L   Q   + ++
Sbjct: 667 NGLYFWVLSRGRAVEFSEDGCSK-RMLGTHKDITRQKSNEVAL--LEAKQDAELANM 720


>gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 587

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|257094176|ref|YP_003167817.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046700|gb|ACV35888.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1119

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 136/808 (16%), Positives = 276/808 (34%), Gaps = 87/808 (10%)

Query: 51  LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDT 110
           L  ++ E     +E+  +  K  +LL   +    V D      E+       +   + + 
Sbjct: 177 LMAELAELRRAQTELRHESEKNRALLRSASDGVHVLDTTGNLVEVSDSFCAMLGYSREEL 236

Query: 111 DLL----SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL 166
                      +       +L +  +  ++           ++   I ++  VSG    +
Sbjct: 237 IGSNMAGRDARFADDDGPSRLRQELDSPQRR--VLHTRYRHRDGRLIPVD--VSGVPVLI 292

Query: 167 ---RI-----LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
              R+       +        E  L+ ++L++ +     L D++   V+ +D+ G  L  
Sbjct: 293 EGQRLLFYSARDVTERKRAEEELALERQRLADQLRFTSQLIDTIPNPVFFKDENGRYLGC 352

Query: 219 NISYKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           N +++     E     G      +  S         + +      +    E         
Sbjct: 353 NTAFETYIGIERDNLIGRSVHDIVPSSLADKYLAADRALFEQRGTQTYQAEVRYADGSLR 412

Query: 274 NKSYKIVRVLNSFGEAGIA----IDVSKEITVNDQLTHTYE----ILHNLTVAIAI---- 321
              +       + G  G      +D+++ + +   L         I+  +   IA+    
Sbjct: 413 EVVFNKATFNRADGGLGGLVGVMLDITERMRMESALKQQAAFTDGIIAAMVDGIAVCHEI 472

Query: 322 -FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
                      N +  +L    L       S+   L + R+     E+   +  ++    
Sbjct: 473 PQPPQVRFTVWNPAMQKLTGYSL-------SDVNELGWQRALQVDDER--QEDARQRAEG 523

Query: 381 VYKSSETHKDTW--HLPNGQT----LHVIVTSNPRGGT--IWMFENLTVQVDLETKYNTL 432
           + +      D W     +G+     +H    S P GG   + +  ++T +   E      
Sbjct: 524 MRRGDHLRGDEWTIRRRDGERRTVQVHTTFVSPPSGGVHLLLVLRDVTARKAAEQLLRQQ 583

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
             +    +D +   +     +G+I + N A R L    EN L             S    
Sbjct: 584 HNLAQRYLDTVQSLMLALDTEGQITMINRAGRDLLGYTENELLGRCWFSTCLPQPS---G 640

Query: 493 ESDGWDLFAAIIT-------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              G   F  II        S +D      G+L L+       +        T+ +  ++
Sbjct: 641 TERGLPTFRRIIAGELDASFSAEDSVLCRDGSLRLIGWKTGALTDDAGRIIGTLSSGADI 700

Query: 546 TDSVRAERALTEKNEALR------------------KADEIKNSFVQHVSYELRSPLTNI 587
            +    E  L      L                   +A+  K+ F+  +S+ELR+P+  I
Sbjct: 701 GERKEVEAELERYRAHLETLVAQRTAELSLAKEAAERANRAKSEFLSSMSHELRTPMNAI 760

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF  +L+    G L++ Q   V  I  +S  LL+L+N++LDLA +++G ++L+  T  +
Sbjct: 761 IGFAQMLE--YDGELSADQHDSVHEILKASRHLLDLINEVLDLARIESGRIELSLETTDI 818

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++++ +  I        I +  +      +  ADR RL Q    +LSNA+ ++ +  +
Sbjct: 819 AAVVDDCRHLIEPLAAPLAITLSTLVPAG-ATVHADRTRLKQALLNLLSNAVKYNRERGS 877

Query: 708 VILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVE 762
           + +   +            V + G  I       VF  F    A   +  G G+GL+I +
Sbjct: 878 IQIDVEQQLTASGLRQRICVADTGIGIAPQRLNEVFQPFTRLLAENSEIEGSGIGLTITK 937

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
             + L GG ++  S     +     +P+
Sbjct: 938 RLVELMGGEIAAESEIGVGSRFWIDLPA 965



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 69/211 (32%), Gaps = 15/211 (7%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
                      + S+E  +      +   + + + + P    + +   L      +T+  
Sbjct: 136 RAGLSREAARAHASAEMARGARRFAD---IVLSINATPVTNALHLMAELAELRRAQTELR 192

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +     +   S+GV V    G +   + +F ++       L       N+A   +R+
Sbjct: 193 HESEKNRALLRSASDGVHVLDTTGNLVEVSDSFCAMLGYSREELIG----SNMAGRDARF 248

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL--EYSIIPLPNAQT---MLTFVNV 545
            ++     L   + +    +R+ L          ++  + S +P+          +  +V
Sbjct: 249 ADDDGPSRLRQELDSP---QRRVLHTRYRHRDGRLIPVDVSGVPVLIEGQRLLFYSARDV 305

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T+  RAE  L  + + L       +  +  +
Sbjct: 306 TERKRAEEELALERQRLADQLRFTSQLIDTI 336


>gi|121997175|ref|YP_001001962.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121588580|gb|ABM61160.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1266

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 121/772 (15%), Positives = 255/772 (33%), Gaps = 62/772 (8%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
             A +    +  L +          L+  +    +  +G       +G   + +      
Sbjct: 10  RRADEWRILFDHLPD-------ATLLIAPDTGRVL--EGNPAAAAHLGYTPEAL------ 54

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQS-FDLVAETQNDCAIKIEGRVSGSCAFLRI 168
              L+  ++       +++   EK+++ G+  F+     ++   + ++  VS    F   
Sbjct: 55  -RGLTIADFEAAETPAEIAAHIEKIQRAGRDDFESQHRRRDGTLVDVQITVS-QVEFAGH 112

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             L  ++ ++ E     + L      F  + D+    +W  D+ G          +    
Sbjct: 113 PRLLAVFRDITERKETIRALRTSEQRFLDVVDAAGEYIWEIDRDGTYQLVTA---QIEPL 169

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-------ETVSTLEHGNNKSYKIV- 280
            G    + IG S   F    +   I +   E+          E  S    G     ++  
Sbjct: 170 LGRSTAEIIGRSPVDFMPSAEAERIQTMLSERAQTGAAWQGLEHESVRPDGTRVWQRVSG 229

Query: 281 -----RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFH 331
                      G  G   D++ E           E L        + +   D+       
Sbjct: 230 LPIFNEAGELIGFRGTGRDITAERQAQQNEKRLNERLRLATTAARIGVWELDRATDRLEW 289

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           +     ++  D A      + +  L  L++      +   +   E      +  E     
Sbjct: 290 DAGSARIFGTDPA------AFNHRLANLQATLWDENRTIAEGLIERSLHSAEPCEAEFRI 343

Query: 392 WHLPNG--QTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
               +G  + +  +  S P         + + E++T +V    +            +   
Sbjct: 344 RRKSDGAIRHIRSVSLSIPDEHGQVQRLVGINEDITDRVQAREQLAAQEARFRGLFELAP 403

Query: 445 EGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            G+A+     G     N              +  T+             E          
Sbjct: 404 VGLAMTDFETGAFLDFNDQVSEAAGYTREAFAQLTYWDVTPREYEPKEREHLEAMARTGY 463

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
              ++ E     G    +  +    +              ++++    E+AL +  EA  
Sbjct: 464 YGPYEKEFIHRDGHRFPVLLNGFRMTDPQTGRVVVWSVIQDISERKAVEQALHQAKEAAE 523

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             +  K+ F+ ++S+E+R+P+  +IG   LL  +    L+  Q  Y E +  +S +LL +
Sbjct: 524 ANNRAKSDFLANMSHEIRTPMNAVIGLGQLLIET---DLDPVQRNYAEKMHNASRMLLGI 580

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILD + ++A  + L+     L++L++++      +  E  + + +  +  +  S   
Sbjct: 581 INDILDYSKIEADRLTLDPHPFDLHELMDQMATLFGDQAGEKGLELFLRVEPTIPSSLEG 640

Query: 683 DRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+ S +LSNA+ F+  G    S   L    +     F V++ G  I  +  +++
Sbjct: 641 DALRLSQVLSNLLSNAIKFTKHGQVGLSITQLGQDPEGVRLHFQVEDTGIGITPEQQRNL 700

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  F        R   G GLGL I +  +   GG + + S+    T     +
Sbjct: 701 FQAFSQADTSTTRNYGGTGLGLVISQRLVAHMGGELRLESTPGEGTRFAFEL 752


>gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 558

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1090

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 142/852 (16%), Positives = 292/852 (34%), Gaps = 122/852 (14%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           I    ++ +   +    L E      ++  ++   N     W+ +     I  +  + + 
Sbjct: 13  IATLKAVQQATLKIQQELQESQ---ERWQLIIQATNEGIWDWNLRTNELFISPRWKEMLG 69

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS--------FDLVAETQNDCAIKIE 156
             Q       F+ W +  H   + +  E ++   +         F L  +  N   I  +
Sbjct: 70  Y-QDQELPNRFDTWKQLLHPQDVERVMEAVQNHLEGQTNHYQIEFRLRCQDGNYKWILSK 128

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           G+   + A   I  + G +S++++   +         + + L DS+  L++ +D  G   
Sbjct: 129 GKALWNSAGKAIR-MVGSHSDISDRKEEQI-------LLRSLIDSIPDLIFCKDAQGVYK 180

Query: 217 WANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
             N +++        E  G            LF  E  + M       +N      T   
Sbjct: 181 ICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHRNEEWI--TYPD 238

Query: 272 GNNKSYKIVRVLNS------FGEAGIAIDVSKEITVNDQLTHTYE---ILHNLTVAIAIF 322
           G+ +    ++           G  GI+ D++      + +    +   +L ++   +   
Sbjct: 239 GSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLSSIARQLIDQ 298

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLPE--------QLNWK 372
           D N  + F   +     + D  ++        L          ++P          + + 
Sbjct: 299 DFNTAVNFTLEALGHFTDGDRGYIIRYSPQQRLWNMTHEWCNYQVPSTLQQSQNIPVEYL 358

Query: 373 TWKENIFSVYKS----------SETHKDTWHLPNGQTLHVIVTSNPRGGT---------- 412
            W        +            +   +     N     ++V      G           
Sbjct: 359 PWFSRQLLNGQPICVNSLDDLPPQAIAERVVFKNSLNPTLVVVPMVTAGQTVGYLGFDAN 418

Query: 413 ---IWMFENL-------------TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
              IW  E +               +   E             +D+ +E +       +I
Sbjct: 419 SSKIWTQEEVNLLKLVGEFIAIAQARSQAEDDRKESEARFAGILDNANEAIISIDEQQQI 478

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQ 515
            L N A    +  +   +  G     +     +  +     D    + TS     R+ + 
Sbjct: 479 TLFNHAAEKTFGYQAVNVL-GQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMVGRRPVF 537

Query: 516 GTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           G  +  S+ + E SI  +             ++T+  +AE AL +  EA   A+  K+ F
Sbjct: 538 GRRQDGSEFLAEVSISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAANRAKSEF 597

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+ELR+PL  I+GFT +++  +  +LN +  Q +  IS S   LL L+NDIL+++ 
Sbjct: 598 LASMSHELRTPLNAILGFTQVMRRDR--TLNPEHQQNLSIISRSGEHLLELINDILEMSK 655

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           ++AG    + ++  L  LL+ ++  +  K  E  +++      ++  ++  D  +L Q+ 
Sbjct: 656 IEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDEGKLRQVL 715

Query: 692 SKILSNAMDFSSKGSTVI-------------------------------LKAARDNGDFI 720
             +L NA+ F+ +G   +                               + A  +     
Sbjct: 716 INLLGNAIKFTEEGGVTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIADSEQIVIT 775

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDE 779
           F V+++G  I  +    +F  F       Q + G GLGL I   F+ L GG++S+SS   
Sbjct: 776 FEVEDSGPGIAPEEVDQLFAAFGQTETGRQAQEGTGLGLPISRKFVQLMGGNISVSSILG 835

Query: 780 GVTTINCRIPSK 791
             +     I +K
Sbjct: 836 QGSLFAFSIKAK 847


>gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
 gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
          Length = 587

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNA-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|332705649|ref|ZP_08425725.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332355441|gb|EGJ34905.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 953

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 123/708 (17%), Positives = 255/708 (36%), Gaps = 87/708 (12%)

Query: 153 IKIEGRVSGSCA------FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
           I  +G+     A         I  +              K L ++    + +  SL  +V
Sbjct: 252 ILDQGQALWDEAGDPVRVVGSITDISDRKQTEEALQENEKALKSNQERLEAIMSSLQDVV 311

Query: 207 WHRD-QAGDILWANISYKKNTETEG-IVFQKAIGESRKLFKEEIKKRMISS-SALEKNFC 263
           W     +G + + NI++++        +F       R+      + R+  +  A+++N  
Sbjct: 312 WSVSLPSGILRYVNIAFEQVYGRPTFELFSDQDNLWRQFIVPVDRDRVEKAWRAVQENRR 371

Query: 264 ET-----VSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLT------ 306
           E+        L +G  +    +   V+   G +    GI  D++K      +L       
Sbjct: 372 ESWDLEYRIQLSNGEIRWLNDRAHVVIRDNGTSVHLHGITTDITKRKQQEAELQQLNREL 431

Query: 307 ----------------HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
                               +  +    I I D    ++  N + ++      + L  N 
Sbjct: 432 EIRVQQRTAALLESEQRFRSLFESAPDFIHILDTQGMIEQVNPAVIQQSGYSESELIGNR 491

Query: 351 SNDELLEFLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             +      ++    + P  L   T ++ I  V K+      T    +     V  T   
Sbjct: 492 LEEFFTPRYQNICQQEFPVLLEQGTHRQEIEFVCKNG-----TVLTTDSSCSVVHDTQGN 546

Query: 409 RGGTIWMFENLTVQVDLETK-------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
               + +  +++ +   E +            +     ++++   V      G+++  NP
Sbjct: 547 ISYILVLQRDISSRKRFEEERTQLIASLQESERRWRSLLENVRLVVVGLDRQGKVEYVNP 606

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            F  L K     +       N      +   +    D+      S            +  
Sbjct: 607 FFLELTKYTAAEVLGKDWFENFLPNSQQQSVQQYFQDILDPDFQSHYQH----SILTKSK 662

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + ++ ++   L N Q              ER            + +K+ F   VS+ELR
Sbjct: 663 QEKIIAWNNTLLQNVQGEAIGTMSIGEDITER---------YAIERMKDEFTSVVSHELR 713

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT+I G  +LL T  +   + +  + +   + S+  L+ LVNDIL+L  +++G ++L+
Sbjct: 714 TPLTSIHGALNLLSTGLIQPQSERGQRVIGIAADSAERLVRLVNDILELERLESGKIRLS 773

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAM 699
              +   +L+ +    +    +   I+++V          F AD  R++Q+ + +LSN +
Sbjct: 774 KQPVNAAELMVKAVDQVQVMANRAGIKLEVSPQAIESEIEFEADSDRIIQVITNLLSNGI 833

Query: 700 DFSSKGSTVILKAARDNGD--------------FIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            FS +GS++ L     + +               +F+VK+ G  IP D  +S+F RF   
Sbjct: 834 KFSDRGSSLWLTVELQHPEELETTSPLDPNSATILFTVKDQGRGIPADKLESIFGRFQQV 893

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 ++ G GLGL+I  + +  HGG + + S+    ++    +P +
Sbjct: 894 DASDARKKGGTGLGLAICRNIVEQHGGKIWVESTVGEGSSFYFTLPQQ 941



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 79/293 (26%), Gaps = 26/293 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E ++  +       L      I  ++      F +    E+   D  +      N +   
Sbjct: 153 EQSLRKREQRWQLALQGANQGIWDWNPKTNETFFSSRCKEMLGYDENY-DIGNYNHQWWT 211

Query: 358 FLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------- 409
            +      P+ ++      E+  +   S    +   H  +G    ++             
Sbjct: 212 HIH-----PDDVDQVIKAMEDHLAQKTSYYVQEYRLHCNDGSYKWILDQGQALWDEAGDP 266

Query: 410 GGTIWMFENLTVQVDLETKYNTLV-------KVQGETIDHLSEGVAVFG-PDGRIKLSNP 461
              +    +++ +   E              +     +  L + V     P G ++  N 
Sbjct: 267 VRVVGSITDISDRKQTEEALQENEKALKSNQERLEAIMSSLQDVVWSVSLPSGILRYVNI 326

Query: 462 AFRSLWK--TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGT 517
           AF  ++   T E         R       R   E     +      S+D E +     G 
Sbjct: 327 AFEQVYGRPTFELFSDQDNLWRQFIVPVDRDRVEKAWRAVQENRRESWDLEYRIQLSNGE 386

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           +  L+D           +        ++T   + E  L + N  L    + + 
Sbjct: 387 IRWLNDRAHVVIRDNGTSVHLHGITTDITKRKQQEAELQQLNRELEIRVQQRT 439


>gi|307300057|ref|ZP_07579842.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306904946|gb|EFN35529.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 917

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 170/383 (44%), Gaps = 17/383 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE +     +     ++ +S+G  ++  + RI ++N  +  ++ + +     G   
Sbjct: 271 EKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLRGRSF 330

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT------LELLSDSVLEYSIIPLP 534
           R I         E    DL       + DER  L          +   D  +  S   +P
Sbjct: 331 REIVEQNL----EMGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGDKWVRISKRKIP 386

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  T+  + ++T+  + +  L         A+E K+ F+  +S+ELR+PL  IIG++++L
Sbjct: 387 DGGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSEML 446

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                   + +    ++ I+++   LL+L+NDILDL+ ++A  M++   T  + DLL +V
Sbjct: 447 IEEARDHEDEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDV 506

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++A  M  N        +  LG   +D+ +L Q    +LSNA  F+  G  V L+  R
Sbjct: 507 AATVAPLMARNGNEFTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFT-NGGRVTLRVRR 565

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               D    +F V + G  +  +  + +FN F        R   G GLGLSI  SF  + 
Sbjct: 566 EQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMI 625

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG V++ S     +     +P++
Sbjct: 626 GGVVTVESEVGKGSVFTMEVPAQ 648



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 9/155 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     Q       L  ++    ++D    +   N  + E++           S  E++E
Sbjct: 276 EDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVE 335

Query: 358 F-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             L       E  + + W +    +++      D     + + + +     P GGT+ ++
Sbjct: 336 QNLEMGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGD-KWVRISKRKIPDGGTVAVY 394

Query: 417 ENLTV----QVDLET---KYNTLVKVQGETIDHLS 444
            ++T     QV+LE       +  + +   +  +S
Sbjct: 395 TDITELKQRQVELERAKSHAESANEAKSRFLASMS 429


>gi|311279881|ref|YP_003942112.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308749076|gb|ADO48828.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 900

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 106/496 (21%), Positives = 206/496 (41%), Gaps = 17/496 (3%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSAN 363
               +  L+   VA+AI+D+   LQ+ N+  +E +     +L       ++L   L  A 
Sbjct: 4   HEQLHAALNAPNVALAIYDEQENLQYWNQRLIEYYPALADWLHRGVQLTDVLRMSLDIAY 63

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
                 + K    ++ + Y+ +  ++        +TL++     P GG I    +++   
Sbjct: 64  PAIHAESKKRMMASMLANYRRNNHYEV--RRVTKRTLYIQYQRTPEGGIISTHTDISRYA 121

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRN 482
           D+      L        +    G+  +         N A   L   + E  +        
Sbjct: 122 DVIKNEQHLHSDFILAAETSHIGIWDWEYHSDELQVNEALLLLLGIQREQNILTSDLWTQ 181

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----T 538
                   +          A++  F  E + L+   E     +++  I+ L         
Sbjct: 182 AFHPDDLAHFHQSIHHATRAVLPIFTCEMRVLRAD-ETYGWMLIQGQIMTLSLQGSAQKV 240

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T+   AE A  +  EA + A++ K+ F+ ++S+E+R+P+  I+G T L   + 
Sbjct: 241 IGTLQDITEQKNAEAASRQAVEAAKAANQAKSEFLANMSHEIRTPMNGILGMTQLCLET- 299

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L + Q  Y+    +S++ LLN++N+ILD + ++AG + LN     +  L+ E+ + +
Sbjct: 300 --DLTADQRDYINMAHSSASALLNIINEILDFSKIEAGKLTLNAEDFAIRPLIQEITRPL 357

Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
             K  E NI + V     +      D  RL Q+ + ++ NA+ F+  G  V+      + 
Sbjct: 358 MPKFSEKNIELLVDIHPDVAIEIHGDPLRLRQVLTNLIGNALKFTLHGEVVLRILPVPDA 417

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
               +FS+ ++G  IPED  K +F  F    +   R   G GLGL+I    +   GG + 
Sbjct: 418 LHRLLFSLHDSGIGIPEDKQKVIFESFSQADNSTTRKYGGTGLGLTISSRLVEKMGGELH 477

Query: 774 ISSSDEGVTTINCRIP 789
           ++S     +  +  +P
Sbjct: 478 LTSQVGQGSCFSFSLP 493


>gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
 gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
          Length = 587

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
 gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
          Length = 558

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
 gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
          Length = 587

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 545

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 192 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 238

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 239 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 295

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 296 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 351

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 352 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 410

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 411 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 469

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 470 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 529

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 530 EGTTFTVVLPK 540



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 167 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 224

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 225 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 270

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 271 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 323


>gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 935

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 134/771 (17%), Positives = 292/771 (37%), Gaps = 57/771 (7%)

Query: 60  SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWL 119
           S ++E+      +  L+  +  +  + D      E            Q    ++    W 
Sbjct: 18  SEITELRRSRELFQLLVDASAQIVWMTDADGNVTEDSPSWRAFTG--QEIDQMMGIG-WT 74

Query: 120 KFHHYIKLSKATEK---LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD---G 173
              H    S A E      +  + F      ++     +  +VSG        S+D   G
Sbjct: 75  NAVHADDRSPALEAWKLAVQNVEDFVAEYRLRHHLGHYVRMQVSGVAQRRSDGSIDRWGG 134

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  +++E   +  +        + + DS    +   D  G +L  N   +    T G+  
Sbjct: 135 MNIDISEWKQREAESEYREHHLRDVIDSTGNFIAVLDLDGTMLEVN---ELALVTGGVSR 191

Query: 234 QKAIGESRKL-----FKEEIKKRM----ISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
           +  IG+         F  +++ ++       +A E   C+T         +   +     
Sbjct: 192 EDVIGKPFWECVWWNFDPKVRHQIHEYCQRVAAGESIRCDTPCWSVADGARPVDLSFRPI 251

Query: 285 SFGEAGIA------IDVSKEITVNDQLTHTYEILHNLT----VAIAIFDQNRYLQFHNRS 334
              +  +       +D+    T  D+L  + E++  +      A+ + D   Y+ + N +
Sbjct: 252 RDTDGNVTHLVPSGVDILDRQTAVDELRRSDELVRTIAENSTQALVMMDDRGYVTYSNNA 311

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLP--EQLNWKTWKENIFSVYKSSETHKDTW 392
           F+++   D   + + P +D +          P  E    +   E+      +   H+D +
Sbjct: 312 FLKMTGFDDTEIRSRPLHDLIHHHYPDGRPYPMAECPIDRALPEDF-----TVRAHEDLF 366

Query: 393 HLPNGQTLHVIVTSNP---RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
              +G T  V+  ++P    G  +       ++T     E K     +      D    G
Sbjct: 367 FRKDGSTFEVLCEASPVFQDGKPVSTVIEVSDVTDLKLSELKIRLSAERLAVAADVAGLG 426

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI---RNIAATCSRYYNESDGWDLFAAI 503
           +       +    +   + +   +++   P         +       Y       L A  
Sbjct: 427 ILHVDLMSQSVTYSAEMKRILGWDDDSAVPSQSAGTPDFVHIDDRERYACHYETMLSANF 486

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNE 560
             S   + + ++   ++    +   ++I        Q + T +++T   + E  L    +
Sbjct: 487 AKSRSIDYRIVRPDAKVRWVRLQTKTLIDEQTGKPDQLVGTMLDITRQRKFEMDLKAARD 546

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A + A + K+ F+ ++S+E+R+P+T I+G+ +LL       L ++   +++ I  +   L
Sbjct: 547 AAQFASQSKSKFLANMSHEIRTPMTAILGYAELLGEH---DLPAEACDFLKTIRRNGDYL 603

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
           L+++++ILDL+ ++A  +++N+    L  ++ +V+  +  +  E +++I+V  DGKL   
Sbjct: 604 LDIIDEILDLSKIEADKLEMNHELFDLMRVVEDVRSIMDVRASEKDLQIRVCYDGKLPRR 663

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             +D +RL QI   ++ NA+ F+ +G  V L     +G   F + ++G  + +D    +F
Sbjct: 664 IQSDPKRLKQILINLVGNAIKFTRQGH-VDLAVRYVDGHLQFDITDSGIGMSDDQKAKLF 722

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F        R   G GLGL+I      + GG + + S     +T    I
Sbjct: 723 QPFSQGDSSVSRDFGGTGLGLAISRRLAKMLGGEIYVQSQLRQGSTFTATI 773



 Score = 37.2 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 59/171 (34%), Gaps = 22/171 (12%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E++ V +   T+     ++    +D  ++ V +   DG +   +P++R+    +E     
Sbjct: 11  EDILVTLSEITELRRSRELFQLLVDASAQIVWMTDADGNVTEDSPSWRAFTG-QEIDQMM 69

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-----------RKSLQGTLELLSDSV 525
           G    N      R     + W L    +  F  E           R  + G  +  SD  
Sbjct: 70  GIGWTNAVHADDR-SPALEAWKLAVQNVEDFVAEYRLRHHLGHYVRMQVSGVAQRRSDGS 128

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           ++         +     +++++  + E     +   LR   +   +F+  +
Sbjct: 129 ID---------RWGGMNIDISEWKQREAESEYREHHLRDVIDSTGNFIAVL 170


>gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1273

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 102/419 (24%), Positives = 180/419 (42%), Gaps = 36/419 (8%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLE--------TKYNTLVKVQGETIDHLSEGVAV 449
           QT+HV       G     +  +  +V  E         +  T  +      ++ SEG+  
Sbjct: 428 QTVHVEEH-TEVGQIAREYNRVLERVVQEMEWREEAVRQLRTAEEKFRSIFENASEGIFR 486

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              +GR+  +NP+   +   E    S    +++I +    Y    D   L   + T  + 
Sbjct: 487 TTANGRLLEANPSLLEMLGYE----SVEDLLQSIPSLDRMYVKPQDRTRLIEDLRT--NG 540

Query: 510 ERKSLQGTLELLSDSVLEYSIIPL---PNAQTMLTF-------VNVTDSVRAERALTEKN 559
           + K    +L      +++ SI      P++   +T        ++VT+   AE  L ++ 
Sbjct: 541 KVKQFAASLYRKDGRIIDTSINARLIAPDSYDDVTQEIIEGSLIDVTERNEAE-VLRQQK 599

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A++ K+SF+  +S+E+R+PL  +IG  DLL  +     + +Q +YV     S+  
Sbjct: 600 EMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCET---DTDQQQGRYVSIAKNSAES 656

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDILD + ++AG ++L+ S   L  L+ +V    A +     + +      ++ S
Sbjct: 657 LLCLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAHRAASKGLELSCHILPEVAS 716

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDM 734
             + D +RL QI   ++ NA+ F+  G   I               F V++ G  IPED+
Sbjct: 717 RVLGDSERLRQILINLIGNAIKFTEVGEIRINVAATSTRDHEQWVRFEVQDTGVGIPEDI 776

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + +F  F        R   G GLGL+I      L GG +++ S      T +  IP +
Sbjct: 777 QQRLFQPFEQADASTTRKFGGTGLGLAICRELAILMGGKITVDSQLGSGATFSLEIPFE 835



 Score = 41.1 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 19/155 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--LAFLATNPSND 353
                +         I  N +  I     N  L   N S +E+   +     L + PS D
Sbjct: 461 EAVRQLRTAEEKFRSIFENASEGIFRTTANGRLLEANPSLLEMLGYESVEDLLQSIPSLD 520

Query: 354 ELLEFLRSANKLPEQLNWKTW-KENIFSVYKSSETHKDT-----WHLPNGQTLHVIVTSN 407
            +    +   +L E L      K+   S+Y+      DT        P+  +   +    
Sbjct: 521 RMYVKPQDRTRLIEDLRTNGKVKQFAASLYRKDGRIIDTSINARLIAPD--SYDDVTQEI 578

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             G  I    ++T + + E     +++ Q E  + 
Sbjct: 579 IEGSLI----DVTERNEAE-----VLRQQKEMAEA 604


>gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L]
 gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L]
          Length = 587

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNA-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|121997170|ref|YP_001001957.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588575|gb|ABM61155.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 871

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 128/640 (20%), Positives = 251/640 (39%), Gaps = 61/640 (9%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             ++    + VF  LF SL   ++      +G  L  N +  +  E E    Q       
Sbjct: 121 DTRRYQRRLEVFHDLFRSLPVGIYRNTPGPSGRFLEVNPAMVELFEAES-EAQLLATPVA 179

Query: 242 KLFKEEIKKRMISSSALEKN---FCETVSTLEHGNNKSYK--IVRVLNSFGEA---GIAI 293
            L+++  ++  IS+    +    + E  +    G     +  + RV +  G     G+  
Sbjct: 180 ALYRDPERRAEISALIEREGSVSWAELQARTLRGRPLWLRLSVRRVEDEHGRTVFDGMVE 239

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+S  + +  +      +L  +   +   D      F N +  +L        A      
Sbjct: 240 DISAHVRLQGERDR---LLEAINEGVCGLDDAGRFTFLNPAARQLLGFASEEAALGREAH 296

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET---HKDTWHLPNGQTLHVIVTSNPRG 410
            L    R     P+   +   +  IF V +S E     +D +   +G+   V+V + P  
Sbjct: 297 ALTHHSR-----PDGTPYPLEECPIFRVLRSGEPLEAWQDYFWRTDGRGFDVLVYAAPLR 351

Query: 411 -------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                  G +  F++++ +  +E + + ++    E +DH    +  F PD  +  +N   
Sbjct: 352 DVEGGITGIVLSFQDISRRRRIERERDQML----EILDHHPHLIQRFLPDTTLLYANRMV 407

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSR-------YYNESDGWDLFAAIITSFDDERKSLQG 516
             L+     ++     I  +              +  +         + +   E++ +Q 
Sbjct: 408 AELFGIPPPQMDGRRWIEWLGPEAREQLEAFLCRFTRAAPVGTVQLAVLAATGEQRRVQW 467

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +   D     S             +++T+ V AERA         +AD  + +F+  V
Sbjct: 468 TCQAFFDEDGLIS-------HFQAVGIDITEQVAAERARA-------QADRDRRTFLAAV 513

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S++LR+PL  I GFTDLL+ ++   L  +Q +Y+    ++S  LL L++ +LDL+ +++G
Sbjct: 514 SHDLRTPLNAIYGFTDLLQATE---LTPQQREYLGLCRSASEKLLALIDTLLDLSRMESG 570

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKIL 695
            + L+     L +++      +     E  +R+ V  + G       D  R  Q+   ++
Sbjct: 571 RLTLHDEPFELAEVVERQVAVLRAVAEEAGLRLTVREAPGTPQWVRGDATRFGQVVHNLI 630

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGV 754
           SNA+ F+  G  V+  A   +G    +V + G  I  +  + +F  F        ++ G 
Sbjct: 631 SNAIQFTEHGEVVLEVAPEGSGWLYVAVHDTGVGIAPEDREHIFKAFAQGNPSFRRQPGN 690

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPSKE 792
           GLGL I +  + L GG + ++S     +T     R+P  E
Sbjct: 691 GLGLRICQELVRLMGGRLEMTSELGKGSTFYFTARLPRVE 730



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 114/372 (30%), Gaps = 37/372 (9%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            SE +E      ++       ++L D          + G IL AN S  +          
Sbjct: 3   RSEQSEAQRLYTRMFTEHVAVQLLIDP---------ETGAILDANPSAVRFYGYPREELC 53

Query: 235 KAIGESRKLFKE-EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA---- 289
               +      E +++  M  + A ++ +      L  G  +  ++              
Sbjct: 54  GMRIQQINTLDEPQVRAEMARARAEQRRYFRFQHRLCGGEVRDVEVYSGPLELAGRQYLH 113

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRYLQFHNRSFVELWEID-LAFL 346
            I  D++       +L   +++  +L V I       +      N + VEL+E +  A L
Sbjct: 114 SIIHDITDTRRYQRRLEVFHDLFRSLPVGIYRNTPGPSGRFLEVNPAMVELFEAESEAQL 173

Query: 347 ATNPSNDELLEFLRSANK--LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
              P      +  R A    L E+    +W E      +        W       L V  
Sbjct: 174 LATPVAALYRDPERRAEISALIEREGSVSWAELQARTLRGRP----LWLR-----LSVRR 224

Query: 405 TSNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
             +  G T++  M E+++  V L+ + + L       ++ ++EGV      GR    NPA
Sbjct: 225 VEDEHGRTVFDGMVEDISAHVRLQGERDRL-------LEAINEGVCGLDDAGRFTFLNPA 277

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            R L        + G     +              +     +    +  ++ Q       
Sbjct: 278 ARQLLGFASEEAALGREAHALTHHSRPDGTPYPLEECPIFRVLRSGEPLEAWQDYFWRTD 337

Query: 523 DSVLEYSIIPLP 534
               +  +   P
Sbjct: 338 GRGFDVLVYAAP 349


>gi|163867966|ref|YP_001609170.1| two-component sensor histidine kinase [Bartonella tribocorum CIP
           105476]
 gi|161017617|emb|CAK01175.1| two-component sensor histidine kinase [Bartonella tribocorum CIP
           105476]
          Length = 773

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 108/497 (21%), Positives = 206/497 (41%), Gaps = 42/497 (8%)

Query: 329 QFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            + +R+  E+   +    L +      ++         P   N+    + +    K    
Sbjct: 285 VYWSRAMYEMLGYVPQDALLSISQISAIIN--------PNDANFFDLAQELMGGKKKHID 336

Query: 388 HKDTWHLPNGQTLHVI----VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                   +G  + +     VT       + +  +++ Q  L  +         + I+++
Sbjct: 337 INVPMRHADGHYVWMRLRAEVTEEEEPHLVGISFDISEQQQLAEQTAQADLRIRDAIENI 396

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           SE   ++  +GR+ +SN  F       +  L  G     + A      +E    D     
Sbjct: 397 SESFVLWDAEGRLVMSNSKFCEYAAIPKQILQSGIQRATVEAMARPALSEYPLKDDGTGN 456

Query: 504 ITSFD----------DERKSLQGTLELLSDSVLE---------------YSIIPLPNAQT 538
           +TS            +ER++  G L  +   + E               +S I       
Sbjct: 457 LTSIRQTADGYWLKINERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQELKRTR 516

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                  T+  +  ++L  + E    A++ K+ F+ ++S+ELR+PL  I+GF+D++  S 
Sbjct: 517 GSAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGFSDIMLQST 576

Query: 599 LGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            G L S++  +Y+  I  S T LL L+NDILD++ ++AG   L+     L  +++E  ++
Sbjct: 577 FGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFTLDCKNTDLEPIISEAVRT 636

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +  E NI +      KL + V D + + QIF  ++SNA+ F+  G  + + A +   
Sbjct: 637 LTPQAQEKNIAVTTNITPKLHAEV-DGRAMKQIFLNLISNAVKFTPSGGNIDVCAFKKKN 695

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
           + IF + + G  IP+   K +   F    +       G GLGL+I  S + LH G + I+
Sbjct: 696 NLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAISRSLLELHKGKLEIT 755

Query: 776 SSDEGVTTINCRIPSKE 792
           S +   TT+   +P  +
Sbjct: 756 SKEMKGTTVTIIMPITQ 772



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 87/281 (30%), Gaps = 27/281 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGI 231
           + +   +   +  +    +++ +      D+ +     +G + W+   Y+       + +
Sbjct: 248 LRARKTDLVSEKFQNRIDMAMMRGRCGLWDWNM----ASGRVYWSRAMYEMLGYVPQDAL 303

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--SYKI---VRVLNSF 286
           +    I                     +K   +    + H +      ++   V      
Sbjct: 304 LSISQISAIINPNDANFFDLAQELMGGKKKHIDINVPMRHADGHYVWMRLRAEVTEEEEP 363

Query: 287 GEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              GI+ D+S++  + +Q         + + N++ +  ++D    L   N  F E   I 
Sbjct: 364 HLVGISFDISEQQQLAEQTAQADLRIRDAIENISESFVLWDAEGRLVMSNSKFCEYAAIP 423

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              L +      +    R A  L E         N+ S+ ++           +G  L +
Sbjct: 424 KQILQSGIQRATVEAMARPA--LSEYPLKDDGTGNLTSIRQT----------ADGYWLKI 471

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                  GG + +  +++     + K+    +     I  L
Sbjct: 472 NERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSFIQEL 512



 Score = 41.1 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 59/187 (31%), Gaps = 17/187 (9%)

Query: 141 FDLVAETQNDCAIKIEG----RVSGSC-AFLRILS---------LDGIYSELAETTLKCK 186
           FDL  E        I+     R +     ++R+ +         L GI  +++E     +
Sbjct: 321 FDLAQELMGGKKKHIDINVPMRHADGHYVWMRLRAEVTEEEEPHLVGISFDISEQQQLAE 380

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
           + +      +   +++       D  G ++ +N  + +       + Q  I  +    + 
Sbjct: 381 QTAQADLRIRDAIENISESFVLWDAEGRLVMSNSKFCEYAAIPKQILQSGIQRAT--VEA 438

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQL 305
             +  +      +       S  +  +    KI  R     G   I  D+S+     ++ 
Sbjct: 439 MARPALSEYPLKDDGTGNLTSIRQTADGYWLKINERRTQDGGLVCIGTDISELKQQQEKF 498

Query: 306 THTYEIL 312
             +   L
Sbjct: 499 EDSERRL 505


>gi|283851408|ref|ZP_06368689.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573146|gb|EFC21125.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 967

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 95/513 (18%), Positives = 198/513 (38%), Gaps = 35/513 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            E  +         ++ NL   + +  FD++    + + S   +  +           + 
Sbjct: 327 AEEALRASEEEHRTLVENLP-GVFVSKFDRDLRHTYVSPSVARISGLPQDHFLGRRPTET 385

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           +   +  A+++ E    + +       ++ S    D       +T    V +      + 
Sbjct: 386 VWREMGFADRI-EAAVERVFATGQGDGFQYSLPSDDGERHRKVRTYPDRVENGQVASVVA 444

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGV----AVFGPDGR-----IKLSNPAFRS 465
              ++T  V++  +     +      D + EG      +F P GR         NPAF  
Sbjct: 445 FSYDVTDLVEMGRELKASEERFRFLFDSMDEGFCLIEVLFDPAGRPVDYRFLEVNPAFAK 504

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                    + G  +R +        +E   + ++  +  +    R             V
Sbjct: 505 QTGLIG---AVGRRMRELVPE-----HEEHWFQIYGHVAATGQSVRVEKPAAGLGRFYDV 556

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             + +      +  + F ++T+  R E AL +  +    A++ K+ F+ ++S+E+R+P+ 
Sbjct: 557 NAFRVGDPEQRRVAIFFTDMTERRRGEEALLQAKQEAEAANQAKSEFLANMSHEIRTPMN 616

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G   L   ++L S +    QY++    S+  LL +VND+LDL+ ++AG ++L  +  
Sbjct: 617 GIMGMIHL---ARLKSADPTILQYLDLADKSALHLLGIVNDVLDLSKMEAGKIRLAAAPF 673

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L        + +     E  +  +  ++D      + D  RL Q+ + ++ NA+ F+ K
Sbjct: 674 ALRREFESAVEPLLVAAGEKGLVFEHGVADDVPDHVIGDAGRLRQVLTNLVGNALKFTGK 733

Query: 705 GSTVILKAARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVG 755
           G  + ++ A   G         +F+V++ G  IP      +F  F            G G
Sbjct: 734 G-RIEVRVALAAGAAEPGTRRLLFTVRDTGIGIPAKRLSRIFESFEQAHSSAHALYGGTG 792

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  + L GG +   S +   +T +  I
Sbjct: 793 LGLTISKRLVELMGGEIIAESREGQGSTFSFSI 825


>gi|29346857|ref|NP_810360.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338754|gb|AAO76554.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 785

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 115/558 (20%), Positives = 225/558 (40%), Gaps = 29/558 (5%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQ 304
           + I   M    A             +G++  Y+  +  L+      +  D+++ +    Q
Sbjct: 103 QNIHANMQKVIATRTVSAAHHDMDFNGSHHYYENRIFPLDEEYVLIMCRDITERVATQQQ 162

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L     +L  ++ +I     +  L + N+ F+E + +          +      L  + +
Sbjct: 163 LEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVTQQMGTQKIYD------LPVSMR 216

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRGGTIWMF-EN 418
            PE   W+   ++I      S +++  +     +   V      +T       IW F ++
Sbjct: 217 TPEL--WEAKLKDIRDNG-GSFSYRAAYVRKGEEKNRVHQVSTYLTQEDDTELIWFFTQD 273

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSP 476
           +T  +    +   L  +    ++++   + V  P  D R    N AF    K   +R   
Sbjct: 274 ITDVIKKRDELRELNLLLDGILNNIPVYLYVKDPEDDFRYLYWNKAFAEHSKIPASRAIG 333

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T                D  +L        D +   +  T E      L+ +++P+   
Sbjct: 334 RTDFEIFPERADAERFRRDDLELIRT-HERIDMQETYVAATGETRIVQTLK-ALVPMEGR 391

Query: 537 Q--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   +    ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  I+GF++LL
Sbjct: 392 EPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSNLL 451

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                     ++  Y   I+ +S ILL L+NDILDL+ ++AG ++     + L ++   +
Sbjct: 452 ---PSAETLEEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMNLGEICRNI 508

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q    ++ E  + + + +  +      DR R+ Q+ +  L+NA  F+  G  +      
Sbjct: 509 YQIHKDRVQE-GVTLILDNQDEDLIIEEDRNRIAQVITNFLTNAGKFTLSGE-IRFGFKV 566

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +N    F VK+ G  I  D    +F+RFV      Q  G GLGL+I    I   GG + +
Sbjct: 567 NNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSFAQ--GTGLGLAICRMIIEKIGGEIGV 624

Query: 775 SSSDEGVTTINCRIPSKE 792
           +S     +T    IP KE
Sbjct: 625 TSEIGKGSTFYFTIPYKE 642



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 103/293 (35%), Gaps = 39/293 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRK 242
           +       + +FK + D +   +      G +++AN  + +    T+ +  QK       
Sbjct: 155 ERVATQQQLEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVTQQMGTQKIYDLPVS 214

Query: 243 LFKEEI-KKRMISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSFGEAG----IAIDV 295
           +   E+ + ++        +F    + +  G   N+ +++   L    +         D+
Sbjct: 215 MRTPELWEAKLKDIRDNGGSFSYRAAYVRKGEEKNRVHQVSTYLTQEDDTELIWFFTQDI 274

Query: 296 SKEITVNDQLTHTY----EILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATN 349
           +  I   D+L         IL+N+ V + + D        + N++F E  +I  +     
Sbjct: 275 TDVIKKRDELRELNLLLDGILNNIPVYLYVKDPEDDFRYLYWNKAFAEHSKIPASRAIGR 334

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSN 407
              +            PE+ + + ++ +   + ++ E    ++T+    G+T  V     
Sbjct: 335 TDFEIF----------PERADAERFRRDDLELIRTHERIDMQETYVAATGETRIVQTLKA 384

Query: 408 --PRGG----TIWMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
             P  G     I +  ++T         +    K     +++   + ++S  +
Sbjct: 385 LVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEI 437



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 63/187 (33%), Gaps = 19/187 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQN--RYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +E + + Q  +  +IL++L   + +F+ +        N                  SN +
Sbjct: 38  EESSTSFQERYAVKILNSLPDMLTVFNHDEVGIEVVSN----------EETNHVGISNKD 87

Query: 355 LLEFLRSANKLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
             E +     +P +   N     + + +    S  H D     +       +        
Sbjct: 88  F-EGMHMRQMVPPEAYQNIHANMQKVIATRTVSAAHHDMDFNGSHHYYENRIFPLDEEYV 146

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + M  ++T +V  + +    +++    +D +S+ +     DG +  +N  F   +   + 
Sbjct: 147 LIMCRDITERVATQQQ----LEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVTQQ 202

Query: 473 RLSPGTH 479
             +   +
Sbjct: 203 MGTQKIY 209


>gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
 gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
          Length = 558

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNA-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|317478874|ref|ZP_07938024.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904956|gb|EFV26760.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 914

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 108/520 (20%), Positives = 213/520 (40%), Gaps = 43/520 (8%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N T  I    ++  L F NR F E   I      T 
Sbjct: 251 GYIQNITDIQKRRNDINLLTHAINNSTEDIYSAHEDGTLIFCNRCFKERHGIGNGQDITR 310

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----------NGQT 399
               +L  + R            +WKE    V +    H    + P           G  
Sbjct: 311 MKIYDLPSYGRDET---------SWKEFANRVKRGETNHGYIVYHPLPKRPEVLAIEGNA 361

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
             V  TS+   GTIW F  +++ ++  E +     ++  + I++L  G+ V         
Sbjct: 362 YWV--TSDKGEGTIWTFGRDVSTRIRHEQQIKQFNQILDKIIENLPAGIVVKD------- 412

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N  F+ L++  E+          +      +Y      +  A  I      ++      
Sbjct: 413 INNNFKYLYRNRESYNREIPIQEALGKDDFDFYPLETAQEKRAQDIEIARTGKEMHWIAE 472

Query: 519 ELLSDS---VLEYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           E   +     L+   + + +       +    ++T+  + +R L    E    +D +K++
Sbjct: 473 ERDGNGNPIYLDKRKMKIESNDFSPILLNIEWDITEMEQMKRELLVAKEKAETSDRLKSA 532

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PL  I+GF+ ++  S   +   ++  Y E + +++  LL L+N+ILDL+
Sbjct: 533 FLANMSHEIRTPLNAIVGFSRIIAES---TNEEERLGYYEIVESNNERLLQLINEILDLS 589

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +++GI++   + + L+ L  E+  +   +     + +      +      D+ R+ Q+ 
Sbjct: 590 KIESGIVEFTITPVRLHPLCKEIHDAHIFRCP-KGVELIYEPSDENIVIDGDKNRIFQVI 648

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           S ++ NA  F++ G  +     ++     F V + G  I  D    VF RFV   +  Q 
Sbjct: 649 SNLIGNAFKFTTAGH-ISYGYHQEGKYVAFHVTDTGMGIAPDKVDRVFERFVKVNNFAQ- 706

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGLSI ++ I   GG++S++S     TT    +P +
Sbjct: 707 -GTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLPLE 745



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 114/369 (30%), Gaps = 54/369 (14%)

Query: 109 DTDLLSFENWLKFHHYIKLSKATE-KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR 167
             D  SF  W+K +   K+  + + ++  +G  F +  +       + +G V+       
Sbjct: 197 PEDRKSFTGWMKENLKGKMENSVDYRIFLKGNIFYIRLKAFA-RERQKDGNVT------- 248

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
              ++G    + +   +     N I++     ++    ++   + G +++ N  +K+   
Sbjct: 249 ---IEGYIQNITDIQKR----RNDINLLTHAINNSTEDIYSAHEDGTLIFCNRCFKERHG 301

Query: 228 TEG------IVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKS 276
                    +         R     +     +        +           +      +
Sbjct: 302 IGNGQDITRMKIYDLPSYGRDETSWKEFANRVKRGETNHGYIVYHPLPKRPEVLAIEGNA 361

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHN 332
           Y +              DVS  I    Q+    +IL     NL   I + D        N
Sbjct: 362 YWVTSDKGEGTIWTFGRDVSTRIRHEQQIKQFNQILDKIIENLPAGIVVKD-------IN 414

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            +F  L+    ++    P  + L +     +  P +   +   ++I       E H    
Sbjct: 415 NNFKYLYRNRESYNREIPIQEALGK--DDFDFYPLETAQEKRAQDIEIARTGKEMHWIAE 472

Query: 393 HL-PNGQTLHVI-----VTSNPRGGTIWMFE-NLTVQVDLETKY-------NTLVKVQGE 438
               NG  +++      + SN     +   E ++T    ++ +         T  +++  
Sbjct: 473 ERDGNGNPIYLDKRKMKIESNDFSPILLNIEWDITEMEQMKRELLVAKEKAETSDRLKSA 532

Query: 439 TIDHLSEGV 447
            + ++S  +
Sbjct: 533 FLANMSHEI 541


>gi|253572318|ref|ZP_04849721.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838093|gb|EES66181.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 785

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 116/558 (20%), Positives = 224/558 (40%), Gaps = 29/558 (5%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQ 304
           + I   M    A             +G++  Y+  +  L+      +  D+++ +    Q
Sbjct: 103 QNIHANMQKVIATRTVSVAHHDMDFNGSHHYYENRIFPLDEEYVLIMCRDITERVATQQQ 162

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L     +L  ++ +I     +  L + N+ F+E + +          +      L  + +
Sbjct: 163 LEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVTQQMGTQKIYD------LPVSMR 216

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRGGTIWMF-EN 418
            PE   W+   ++I      S +++  +     +   V      +T       IW F ++
Sbjct: 217 TPEL--WEAKLKDIRDNG-GSFSYRAAYVRKGEEKNRVHQVSTYLTQEDDTELIWFFTQD 273

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSP 476
           +T  +    +   L  +    ++++   + V  P  D R    N AF    K   +R   
Sbjct: 274 ITDVIKKRDELRELNLLLDGILNNVPVYLYVKDPEDDFRYLYWNKAFAEHSKIPASRAIG 333

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T                D  +L        D +   +  T E      L+ +++P+   
Sbjct: 334 RTDFEIFPERADAERFRRDDLELIRT-HERIDMQETYVAATGETRIVQTLK-ALVPMEGR 391

Query: 537 Q--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   +    ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  I+GF++LL
Sbjct: 392 EPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSNLL 451

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                     ++  Y   I+ +S ILL L+NDILDL+ ++AG ++     + L ++   +
Sbjct: 452 ---PSAETLEEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMNLGEVCRNI 508

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q    ++ E  + + + ++        DR R+ Q+ +  L+NA  F+  G  +      
Sbjct: 509 YQIHKDRVQE-GVTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLSGE-IRFGFKV 566

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           DN    F VK+ G  I  D    +F+RFV      Q  G GLGL+I    I   GG +  
Sbjct: 567 DNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSFAQ--GTGLGLAICRMIIEKIGGEIGA 624

Query: 775 SSSDEGVTTINCRIPSKE 792
           +S     +T    IP KE
Sbjct: 625 TSEVGKGSTFFFTIPYKE 642



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 101/293 (34%), Gaps = 39/293 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRK 242
           +       + +FK + D +   +      G +++AN  + +    T+ +  QK       
Sbjct: 155 ERVATQQQLEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVTQQMGTQKIYDLPVS 214

Query: 243 LFKEEI-KKRMISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSFGEAG----IAIDV 295
           +   E+ + ++        +F    + +  G   N+ +++   L    +         D+
Sbjct: 215 MRTPELWEAKLKDIRDNGGSFSYRAAYVRKGEEKNRVHQVSTYLTQEDDTELIWFFTQDI 274

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIF----DQNR--YLQFHNRSFVELWEIDLAFLATN 349
           +  I   D+L     +L  +   + ++    D        + N++F E  +I  +     
Sbjct: 275 TDVIKKRDELRELNLLLDGILNNVPVYLYVKDPEDDFRYLYWNKAFAEHSKIPASRAIGR 334

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSN 407
              +            PE+ + + ++ +   + ++ E    ++T+    G+T  V     
Sbjct: 335 TDFEIF----------PERADAERFRRDDLELIRTHERIDMQETYVAATGETRIVQTLKA 384

Query: 408 --PRGG----TIWMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
             P  G     I +  ++T         +    K     +++   + ++S  +
Sbjct: 385 LVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEI 437



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 63/187 (33%), Gaps = 19/187 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQN--RYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +E + + Q  +  +IL++L   + +F+ N        N                  SN +
Sbjct: 38  EESSTSFQERYAVKILNSLPDMLTVFNHNEVGIEVVSN----------EETNHVGISNKD 87

Query: 355 LLEFLRSANKLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
             E +     +P +   N     + + +    S  H D     +       +        
Sbjct: 88  F-EGMHMRQMVPPEAYQNIHANMQKVIATRTVSVAHHDMDFNGSHHYYENRIFPLDEEYV 146

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + M  ++T +V  + +    +++    +D +S+ +     DG +  +N  F   +   + 
Sbjct: 147 LIMCRDITERVATQQQ----LEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVTQQ 202

Query: 473 RLSPGTH 479
             +   +
Sbjct: 203 MGTQKIY 209


>gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
 gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
          Length = 558

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
 gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
          Length = 571

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 218 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 264

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 265 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 321

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 322 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 377

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 378 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 436

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 437 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 495

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 496 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 555

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 556 KGTTFTVVLPK 566



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 193 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 250

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 251 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 296

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 297 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 349


>gi|16264090|ref|NP_436882.1| putative sensory histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|15140215|emb|CAC48742.1| putative two-component sensor histidine kinase [Sinorhizobium
           meliloti 1021]
          Length = 917

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 169/383 (44%), Gaps = 17/383 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE +     +     ++ +S+G  ++  + RI ++N  +  ++ + +     G   
Sbjct: 271 EKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLRGRSF 330

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT------LELLSDSVLEYSIIPLP 534
           R I         E    DL       + DER  L          +   D  +  S   +P
Sbjct: 331 REIVEQNL----EMGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGDKWVRISKRKIP 386

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  T+  + ++T   + +  L         A+E K+ F+  +S+ELR+PL  IIG++++L
Sbjct: 387 DGGTVAVYTDITQLKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYSEML 446

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                   + +    ++ I+++   LL+L+NDILDL+ ++A  M++   T  + DLL +V
Sbjct: 447 IEEARDHEDEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDV 506

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++A  M  N        +  LG   +D+ +L Q    +LSNA  F+  G  V L+  R
Sbjct: 507 AATVAPLMARNGNEFTQDFEADLGEMHSDQTKLRQNLFNLLSNAAKFT-NGGRVTLRVRR 565

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               D    +F V + G  +  +  + +FN F        R   G GLGLSI  SF  + 
Sbjct: 566 EQRPDRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMI 625

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG V++ S     +     +P++
Sbjct: 626 GGVVTVESEVGKGSVFTMEVPAQ 648



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 9/155 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     Q       L  ++    ++D    +   N  + E++           S  E++E
Sbjct: 276 EDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVE 335

Query: 358 F-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             L       E  + + W +    +++      D     + + + +     P GGT+ ++
Sbjct: 336 QNLEMGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGD-KWVRISKRKIPDGGTVAVY 394

Query: 417 ENLT----VQVDLET---KYNTLVKVQGETIDHLS 444
            ++T     QV+LE       +  + +   +  +S
Sbjct: 395 TDITQLKQRQVELERAKSHAESANEAKSRFLASMS 429


>gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1090

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 142/852 (16%), Positives = 292/852 (34%), Gaps = 122/852 (14%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           I    ++ +   +    L E      ++  ++   N     W+ +     I  +  + + 
Sbjct: 13  IATLKAVQQATLKIQQELQESQ---ERWQLIIQATNEGIWDWNLRTNELFISPRWKEMLG 69

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS--------FDLVAETQNDCAIKIE 156
             Q       F+ W +  H   + +  E ++   +         F L  +  N   I  +
Sbjct: 70  Y-QDQELPNRFDTWKQLLHPQDVERVMEAVQNHLEGQTNHYQIEFRLRCQDGNYKWILSK 128

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           G+   + A   I  + G +S++++   +         + + L DS+  L++ +D  G   
Sbjct: 129 GKALWNSAGKAIR-MVGSHSDISDRKEEQI-------LLRSLIDSIPDLIFCKDAQGVYK 180

Query: 217 WANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
             N +++        E  G            LF  E  + M       +N      T   
Sbjct: 181 ICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHRNEEWI--TYPD 238

Query: 272 GNNKSYKIVRVLNS------FGEAGIAIDVSKEITVNDQLTHTYE---ILHNLTVAIAIF 322
           G+ +    ++           G  GI+ D++      + +    +   +L ++   +   
Sbjct: 239 GSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLSSIARQLIDQ 298

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLPE--------QLNWK 372
           D N  + F   +     + D  ++        L          ++P          + + 
Sbjct: 299 DFNTAVNFTLEALGHFTDGDRGYIIRYSPQQRLWNMTHEWCNYQVPSTLQQSQNIPVEYL 358

Query: 373 TWKENIFSVYKS----------SETHKDTWHLPNGQTLHVIVTSNPRGGT---------- 412
            W        +            +   +     N     ++V      G           
Sbjct: 359 PWFSRQLLNGQPICVNSLDDLPPQAIAERVVFKNSLNPTLVVVPMVTAGQTVGYLGFDAN 418

Query: 413 ---IWMFENL-------------TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
              IW  E +               +   E             +D+ +E +       +I
Sbjct: 419 SSKIWTQEEVNLLKLVGEFIAIAQARSQAEDDRKESEARFAGILDNANEAIISIDEQQQI 478

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQ 515
            L N A    +  +   +  G     +     +  +     D    + TS     R+ + 
Sbjct: 479 TLFNHAAEKTFGYQAVNVL-GQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMVGRRPVF 537

Query: 516 GTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           G  +  S+ + E SI  +             ++T+  +AE AL +  EA   A+  K+ F
Sbjct: 538 GRRQDGSEFLAEVSISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAANRAKSEF 597

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+ELR+PL  I+GFT +++  +  +LN +  Q +  IS S   LL L+NDIL+++ 
Sbjct: 598 LASMSHELRTPLNAILGFTQVMRRDR--TLNPEHQQNLSIISRSGEHLLELINDILEMSK 655

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           ++AG    + ++  L  LL+ ++  +  K  E  +++      ++  ++  D  +L Q+ 
Sbjct: 656 IEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDEGKLRQVL 715

Query: 692 SKILSNAMDFSSKGSTVI-------------------------------LKAARDNGDFI 720
             +L NA+ F+ +G   +                               + A  +     
Sbjct: 716 INLLGNAIKFTEEGGVTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIADSEQIVIT 775

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDE 779
           F V+++G  I  +    +F  F       Q + G GLGL I   F+ L GG++S+SS   
Sbjct: 776 FEVEDSGPGIAPEEVDQLFAAFGQTETGRQAQEGTGLGLPISRKFVQLMGGNISVSSILG 835

Query: 780 GVTTINCRIPSK 791
             +     I +K
Sbjct: 836 QGSLFAFSIKAK 847


>gi|220908096|ref|YP_002483407.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864707|gb|ACL45046.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1099

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 125/611 (20%), Positives = 237/611 (38%), Gaps = 62/611 (10%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS--SALEKNFCETVSTLEH---GNNK 275
           +  +  E       ++   +R+   + +  + I+S      ++  +TV  + H   G  +
Sbjct: 273 AALEAEEVIAADQAQSDWRTREFLDDWLLPQGITSMMDVPIRSSGKTVGVICHEHVGPPR 332

Query: 276 SYKIVRVLNSFGEAGI------AIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
            + I     +   A +      A D  + E+ +         I     + I   D     
Sbjct: 333 HWTIEEQNFANCLAYMISLAIEARDRQRSELALRQSEERFRAIFEQAAIGIFQTDATGKY 392

Query: 329 QFHNRSFVELWEIDLAFLA-------TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
              N+ F +        L        T+P +      LR+A    E           FS+
Sbjct: 393 IQVNQRFCQFSGYSADELLQLRMQDITHPVDLRRCLELRNALFSGEL--------QSFSL 444

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQGET 439
            K        W   N   + +    +P G   TI + E+++ +   E +  +    +   
Sbjct: 445 EKRLRQKSGQWRWAN---VTISAVQHPDGFPCTIGVIEDISERKQAEAQRQSADSFRRAL 501

Query: 440 IDHLSEGVAVFG-----PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-------AATC 487
           ID  +EG+ +       P  R  + N    SL       ++     + +        A  
Sbjct: 502 IDRAAEGICMCHGIEEFPYVRFTVWNQRMVSLTGYTMEEINRLGWYQTLYPDSEIREAAI 561

Query: 488 SRYYNESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            R      G DL A    IT  D E++ +  +  L+     +Y          +    ++
Sbjct: 562 ERMSRMRQGEDLMAEEWTITRADGEQRVVCISTSLIPGVEGDY--------HALAVMQDI 613

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T     E A+ +  EA   A++ K++F+ H+S+ELR+PL  I+GF  L++   L  L + 
Sbjct: 614 TQRKHTELAMQQAKEAAEAANQAKSAFLAHMSHELRTPLNAILGFAQLMERDTL--LTTA 671

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q + +  I+ S   LL L+ND+L+++ ++AG + L+ +   L+ LL  +++    +    
Sbjct: 672 QKESLSIINRSGEHLLGLINDVLEMSKIEAGRIVLHKAQFDLHRLLQTLQEMFRVRATAK 731

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIF 721
            + + +     L    ++D  +L Q+   +LSNA+ F+  G  + L A   +       F
Sbjct: 732 GLVLTMNLSPSLPQLIISDEGKLRQVLINLLSNAVKFTDVGH-ITLTANYADDPDPRLWF 790

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I       +F  FV        + G GLGL+I   F+ L GG + + S    
Sbjct: 791 QVEDTGRGIAAAEQHHLFEPFVQTTTGANAQEGTGLGLTISHQFVQLLGGELRVESEVNR 850

Query: 781 VTTINCRIPSK 791
            +T +  +P +
Sbjct: 851 GSTFSFDLPVE 861



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 82/280 (29%), Gaps = 37/280 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV- 232
           +  E  +       L      F+ +F+     ++  D  G  +  N  + + +       
Sbjct: 351 LAIEARDRQRSELALRQSEERFRAIFEQAAIGIFQTDATGKYIQVNQRFCQFSGYSADEL 410

Query: 233 ---FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV--RVLNSFG 287
                + I     L +    +  + S  L+    E     + G  +   +    V +  G
Sbjct: 411 LQLRMQDITHPVDLRRCLELRNALFSGELQSFSLEKRLRQKSGQWRWANVTISAVQHPDG 470

Query: 288 ---EAGIAIDVSKEITVNDQLTHT----YEILHNLTVAIAI------FDQNRYLQFHNRS 334
                G+  D+S+      Q          ++      I +      F         N+ 
Sbjct: 471 FPCTIGVIEDISERKQAEAQRQSADSFRRALIDRAAEGICMCHGIEEF-PYVRFTVWNQR 529

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-- 392
            V L            + +E+          P+    +   E +  + +  +   + W  
Sbjct: 530 MVSLTGY---------TMEEINRLGWYQTLYPDSEIREAAIERMSRMRQGEDLMAEEWTI 580

Query: 393 HLPNGQTLHVIVTSNPRGGT------IWMFENLTVQVDLE 426
              +G+   V ++++   G       + + +++T +   E
Sbjct: 581 TRADGEQRVVCISTSLIPGVEGDYHALAVMQDITQRKHTE 620


>gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 558

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 AGEKEISLQVNA-LKRVSVIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|283852097|ref|ZP_06369371.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572487|gb|EFC20473.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1340

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 142/877 (16%), Positives = 294/877 (33%), Gaps = 123/877 (14%)

Query: 2    MAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
            ++    +G   G     L     A F  + G+L  T +   L +              + 
Sbjct: 217  LSLAEAVGGMDGAGAGRLAVTDAAGF--LLGVLTATDVATALHL----------LLAEAE 264

Query: 62   LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS----FEN 117
             + +  + ++Y  L  +        D     P  +     R+   +   D L       +
Sbjct: 265  TARLGAEAARYRDLYDQAMQGLFRLD-PAGRPLAVNTPLARLLGYRDVADCLRQAGQASH 323

Query: 118  WLKFHHYIKLSKATEKL-RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR-ILSLDG-- 173
             L+     +       L R +  +F++        + + +G ++     LR +    G  
Sbjct: 324  PLRLDAPGRRDVLLAALARPDAVAFEV-------GSYRPDGSITRLRCVLRCVRDARGCP 376

Query: 174  IYSELA----ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-TET 228
            +  E A       L   + ++ I  ++ + +    L+  RD AG + +AN ++ +  + T
Sbjct: 377  VALEGACADFPAALPDGRPAHEIE-YRSIVEHQTELICRRDAAGRLTFANPAFARYWSRT 435

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
                  +            +  R ++S    +        +   + +         +  +
Sbjct: 436  PEACVAEDFRPGIPEEDAAVVARRVASLGPARPTTGFEHRVVRADGRIRWQRWTCRALFD 495

Query: 289  AGIAI--------DVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            A  A+        DV+    V  +L     H   +L  L + +    ++      N++F 
Sbjct: 496  ASGAVAEYQFVGRDVTARKLVEQRLHTQAGHALAMLEALPLPVFHKGRDGRYTGCNQAFE 555

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             L  +  A +        L +   + N  P E L  +   +    VY++  +    W   
Sbjct: 556  TLLGLPRARIVGQ----TLGDLCGTDNASPYEALESELLAKGHRQVYEARLSLPAGWRSM 611

Query: 396  --NGQTLHVIVTSNPRGGTIWMFENLTVQVDLE--------------------------- 426
              +   +          G I +  ++T +   E                           
Sbjct: 612  AIHKAVVRDAGAGGEATGIIGVALDVTERRLAEAAATKVRDGLEAETLQLGAELGRVRAR 671

Query: 427  ------------TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
                         +     +     +  + +G++V  PD  +   N A R+L+      +
Sbjct: 672  LAAEVLERERVGERLRHEARFLETVLSSIQDGISVLSPDLTVVTVNRAMRALYIDSNEPV 731

Query: 475  SPGTH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                H   + +   C    +      + +  +     +R  L G         LE    P
Sbjct: 732  GRKCHEVYQGLGMPCQ---DCPSLRAMASGKLAMSLVKRCGLGGE-----TGWLELFCFP 783

Query: 533  LPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            L +        +    +VT   + E  L    E      + K +F+ ++S+E+R+PL  +
Sbjct: 784  LFDDGGAVTGVVEIVRDVTAGKKLEAELAAALERAEAGSQAKGAFLANMSHEIRTPLNAV 843

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            +G+  L+   +   L  +Q + +  +  S+  LL+L+NDILD + ++AG M+L   +  L
Sbjct: 844  LGYVQLMLRDR---LEPRQRERLAVVEESAATLLSLINDILDYSKIEAGRMELKNESFDL 900

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
               L  V +          + + +    ++      D  RL Q+   +LSNA+ ++  GS
Sbjct: 901  PACLAAVVKEQEVLARNKGLDLTLAMGPEVPRDVRGDGLRLRQVLRNLLSNAVKYTEAGS 960

Query: 707  T-VILKAARD---------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
              V +    +              F+V + G  I E+   ++F+ F         ++ G 
Sbjct: 961  VAVTVSRTGELPGPAGEAPRQILRFAVADTGVGIAEEQQAAIFDSFTQVDDGLTRRQAGT 1020

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+I      L GG V + S     +      P +
Sbjct: 1021 GLGLAICRRLAGLMGGGVFVESVPGRGSVFWLECPFE 1057


>gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1287

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 104/513 (20%), Positives = 204/513 (39%), Gaps = 40/513 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELLE 357
             +         IL +   AI   +      F N + + +   D  A L     + ++  
Sbjct: 395 EALRSSEDQLRAILDSTAEAIYGTNLQGICTFCNAACLRMLGYDDPAQLIGKNMHHQIHH 454

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GG 411
             R  +  PE+   +      F   +      + +   +G    V   S P+       G
Sbjct: 455 SHRDGSAFPEE---ECRISQSFKEGQGIHVDDEVFWRRDGSCFPVEYWSYPQYQDGRIVG 511

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE- 470
           T+  F ++T ++      ++ + +    +++    V +    G I+  N  F  +     
Sbjct: 512 TVATFMDITERIKS----HSSLLMLSRAVENSPAIVVITDHAGSIEYVNSKFVEITGFAA 567

Query: 471 ENRLSPGTHIRNIAATCSRYYNE-SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           E+ L     I N       +Y +  D  +        F + +K+ +   E         S
Sbjct: 568 EDALGHNPRILNAGVQSKEFYRQMWDTINAGQEWRGEFCNRKKNGEMHWE-------HAS 620

Query: 530 IIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I P+ +    +T       ++T+S R    L    E     +  K+ F+ ++S+E+R+PL
Sbjct: 621 ISPIRDDHGRITHFVAVKEDITESRRIADELRRAKEEAEAGNRSKSEFLANMSHEIRTPL 680

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIGF  L   ++   L ++Q  Y+  ++ ++T LL ++N+ILD + ++AG ++  ++ 
Sbjct: 681 NAIIGFNTLALETQ---LTAQQHDYLSRVNFAATSLLRIINEILDFSKIEAGKLEFEHAV 737

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
               ++L  +      +     + +++     L    V D  RL Q+   ++ NA+ F+ 
Sbjct: 738 FNPREVLQNIINLFQQQAAHKGLSLELHCSDNLPAELVGDSVRLGQVLVNLVGNAVKFTE 797

Query: 704 KGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           +G+ V L A+      +N    FSV++ G  +  D    +F  F        R   G GL
Sbjct: 798 QGA-VSLYASPTEYGCENVTLEFSVRDTGIGLAPDKLTKLFQPFTQADGSITRKFGGTGL 856

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI +  + L GGH+   S     +  +  +P
Sbjct: 857 GLSISKRIVELTGGHIWAESEPGYGSVFSFNMP 889



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 90/293 (30%), Gaps = 30/293 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV------- 232
           E  L  + L +     + + DS    ++  +  G   + N +  +    +          
Sbjct: 389 ERGLLLEALRSSEDQLRAILDSTAEAIYGTNLQGICTFCNAACLRMLGYDDPAQLIGKNM 448

Query: 233 --------FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
                      +     +    +  K        ++ F     +       SY   +   
Sbjct: 449 HHQIHHSHRDGSAFPEEECRISQSFKEGQGIHVDDEVFWRRDGSCFPVEYWSYPQYQDGR 508

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL- 343
             G     +D+++ I  +  L      + N    + I D    +++ N  FVE+      
Sbjct: 509 IVGTVATFMDITERIKSHSSLLMLSRAVENSPAIVVITDHAGSIEYVNSKFVEITGFAAE 568

Query: 344 AFLATNPSNDELLEFLRSA-NKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
             L  NP         +    ++ + +N  + W+    +  K+ E H +   +   +  H
Sbjct: 569 DALGHNPRILNAGVQSKEFYRQMWDTINAGQEWRGEFCNRKKNGEMHWEHASISPIRDDH 628

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTL-------VKVQGETIDHLSEGV 447
             +T       + + E++T    +  +            + + E + ++S  +
Sbjct: 629 GRIT-----HFVAVKEDITESRRIADELRRAKEEAEAGNRSKSEFLANMSHEI 676


>gi|218130832|ref|ZP_03459636.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
 gi|217987176|gb|EEC53507.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
          Length = 912

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 116/606 (19%), Positives = 243/606 (40%), Gaps = 39/606 (6%)

Query: 207 WHRDQAGDILWANISYKKNTETE-------GIVFQKAIGESRKLFKEEIKKRMISSSALE 259
           W  D  G        Y   T  E              + E R++F + + + +       
Sbjct: 154 WWYDS-GKECICYSGYSDITLDEEQQTVSLDSYITHILPEDREIFCKWLDENLQGDMKES 212

Query: 260 KNFCET-VSTLEHGNNKSYKIVRVLNSFGEA-GIAIDVSKEITVNDQLTHTYEILHNLTV 317
             +       + +   K++   +         G   +++      + +T     ++N T 
Sbjct: 213 VEYRIHFRQKVFYIRQKTFSCEKRPGGHTVLEGYIQNITDIQQRRNDITLLTHAINNATE 272

Query: 318 AIAIFDQNRYLQFHNRSFV---------ELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            I    ++  L F NR F          ++ ++ +  + ++  ++E    ++++  +P+ 
Sbjct: 273 DIFAAHEDGTLIFANRFFRQHHNIGLTDDITQLKIYQVNSHARSEEEWNRIKAS--IPKG 330

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLET 427
              K      F  Y     H +   +  G    V  TS+    ++W F +++T ++  E 
Sbjct: 331 SQRKG-----FIFYDPLPLHPEVLAM-EGNAFWV--TSDEGEYSLWAFGKDITQRIKDEQ 382

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-T 486
           +     +V  +TI++L  G+ V       K       S  +    + + G    +     
Sbjct: 383 QIKRFSQVMDKTIENLPAGIVVKDIKNNFKYLYRNRESYNRNIPMKEALGKDDFDFYPFD 442

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            ++   + D       I   +  E     G   +L    +        +   +    ++T
Sbjct: 443 IAQKKRKQDMEIAETGIEKHWITEEYDQNGKSIILDKRKMRIESKDF-SPILLSIEWDIT 501

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R ++ L    E    +D++K++F+ ++S+E+R+PL  I+GF+ ++  S       ++
Sbjct: 502 EMERMKQELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAESTDA---EER 558

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             + + + A++  LL L+N+ILDL+ ++AGI++   + + L+ L  E+  ++  +  +  
Sbjct: 559 KSFYDIVEANNERLLQLINEILDLSKIEAGIVEFTITPVRLHSLCREIYDALKFRCPQ-G 617

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +++      +  +   D+ R+ Q+ S ++ NA  F+++G  V     R      F V + 
Sbjct: 618 VKLIYEPSDEEITIEGDKNRIFQVISNLIGNAFKFTTQG-KVSYGYRRKGDGIEFHVSDT 676

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I       VF RFV      Q  G GLGLSI ++ I   GG +S SS     TT   
Sbjct: 677 GIGIEAGKLDKVFERFVKMNSFAQ--GTGLGLSICKTIIERLGGTISASSEMGKGTTFTF 734

Query: 787 RIPSKE 792
            +P K+
Sbjct: 735 TLPEKQ 740


>gi|298386496|ref|ZP_06996052.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298260873|gb|EFI03741.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 785

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 116/558 (20%), Positives = 224/558 (40%), Gaps = 29/558 (5%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQ 304
           + I   M    A             +G++  Y+  +  L+      +  D+++ +    Q
Sbjct: 103 QNIHANMQKVIATRTVSAAHHDMDFNGSHHYYENRIFPLDEEYVLIMCRDITERVATQQQ 162

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L     +L  ++ +I     +  L + N+ F+E + +          +      L  + +
Sbjct: 163 LEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVTQQMGTQKIYD------LPVSMR 216

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRGGTIWMF-EN 418
            PE   W+   ++I      S +++  +     +   V      +T       IW F ++
Sbjct: 217 TPEL--WEAKLKDIRDNG-GSFSYRAAYVRKGEEKNRVHQVSTYLTQEDDTELIWFFTQD 273

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSP 476
           +T  +    +   L  +    ++++   + V  P  D R    N AF    K   +R   
Sbjct: 274 ITDVIKKRDELRELNLLLDGILNNVPVYLYVKDPEDDFRYLYWNKAFAEHSKIPASRAIG 333

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T                D  +L        D +   +  T E      L+ +++P+   
Sbjct: 334 RTDFEIFPERADAERFRRDDLELIRT-HERIDMQETYVAATGETRIVQTLK-ALVPMEGR 391

Query: 537 Q--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   +    ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  I+GF++LL
Sbjct: 392 EPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSNLL 451

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                     ++  Y   I+ +S ILL L+NDILDL+ ++AG ++     + L ++   +
Sbjct: 452 ---PSAETLEEEKLYSSIINQNSEILLQLINDILDLSKIEAGTLEYVRQPMNLGEVCRNI 508

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q    ++ E  + + + ++        DR R+ Q+ +  L+NA  F+  G  +      
Sbjct: 509 YQIHKDRVQE-GVTLILDNEDDDLIIEEDRNRIAQVITNFLTNAGKFTLSGE-IRFGFKV 566

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           DN    F VK+ G  I  D    +F+RFV      Q  G GLGL+I    I   GG +  
Sbjct: 567 DNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSFAQ--GTGLGLAICRMIIEKIGGEIGA 624

Query: 775 SSSDEGVTTINCRIPSKE 792
           +S     +T    IP KE
Sbjct: 625 TSEVGKGSTFFFTIPYKE 642



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 101/293 (34%), Gaps = 39/293 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRK 242
           +       + +FK + D +   +      G +++AN  + +    T+ +  QK       
Sbjct: 155 ERVATQQQLEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVTQQMGTQKIYDLPVS 214

Query: 243 LFKEEI-KKRMISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSFGEAG----IAIDV 295
           +   E+ + ++        +F    + +  G   N+ +++   L    +         D+
Sbjct: 215 MRTPELWEAKLKDIRDNGGSFSYRAAYVRKGEEKNRVHQVSTYLTQEDDTELIWFFTQDI 274

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIF----DQNR--YLQFHNRSFVELWEIDLAFLATN 349
           +  I   D+L     +L  +   + ++    D        + N++F E  +I  +     
Sbjct: 275 TDVIKKRDELRELNLLLDGILNNVPVYLYVKDPEDDFRYLYWNKAFAEHSKIPASRAIGR 334

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSN 407
              +            PE+ + + ++ +   + ++ E    ++T+    G+T  V     
Sbjct: 335 TDFEIF----------PERADAERFRRDDLELIRTHERIDMQETYVAATGETRIVQTLKA 384

Query: 408 --PRGG----TIWMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
             P  G     I +  ++T         +    K     +++   + ++S  +
Sbjct: 385 LVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSHEI 437



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 63/187 (33%), Gaps = 19/187 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQN--RYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +E + + Q  +  +IL++L   + +F+ +        N                  SN +
Sbjct: 38  EESSTSFQERYAVKILNSLPDMLTVFNHDEVGIEVVSN----------EETNHVGISNKD 87

Query: 355 LLEFLRSANKLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
             E +     +P +   N     + + +    S  H D     +       +        
Sbjct: 88  F-EGMHMRQMVPPEAYQNIHANMQKVIATRTVSAAHHDMDFNGSHHYYENRIFPLDEEYV 146

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + M  ++T +V  + +    +++    +D +S+ +     DG +  +N  F   +   + 
Sbjct: 147 LIMCRDITERVATQQQ----LEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVTQQ 202

Query: 473 RLSPGTH 479
             +   +
Sbjct: 203 MGTQKIY 209


>gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
 gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
          Length = 587

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
 gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
          Length = 1191

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 101/535 (18%), Positives = 210/535 (39%), Gaps = 57/535 (10%)

Query: 295  VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            +++   +ND + +   +L +  + +   D+   ++    +      +  A          
Sbjct: 532  INELTQLNDDMNN---LLRSTNIGVVFLDRQLNIRKFTPAATRAINLKPA---------- 578

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPR--- 409
              +  R    L  +L+       + +V ++    +   ++P  +G  L + +    R   
Sbjct: 579  --DIGRPLADLTSKLDCPDLLTLLQTVLETENAEQREVNIPSTDGTLL-MQINPYWREDD 635

Query: 410  --GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
               G +  F ++     ++ + +    +          G+ ++  + +    N +    +
Sbjct: 636  TSDGIVLSFIDIDELEKVQHQLHQANAILENLYATSPVGLCLYDHELKFVRINQSLVESY 695

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              E       T    +     +            A I S +   ++          S   
Sbjct: 696  GLEVEDALGKTSSEVLPELGRQIEPLLRQVLETNAPIISIELRGRTPADPAAEKVWSASY 755

Query: 528  YSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKA-----------------DEIK 569
            Y +  L +   +    +++T+   AE +L E    L +                  ++ K
Sbjct: 756  YPVDVLEDQCGVGGVMIDITERTHAEDSLRESEAQLIQQKEALEDAIAIAQAADFANQAK 815

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            + F+ ++S+E+R+P+ +I GF+DLL  S+   LN KQ  ++E + A+S  LL L+NDILD
Sbjct: 816  SEFLANMSHEIRTPMNSICGFSDLLLRSQ---LNPKQRHWIEILQANSNRLLALINDILD 872

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
             + ++A  + LN     L  LL EV+ S   +     +++    +  +    + D  RL 
Sbjct: 873  FSKIEARKLHLNPREFNLETLLQEVRFSFTPQAERKGLQLTHEIEPDVPRHLIGDDFRLQ 932

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGD---------FIFSVKNNGSSIPEDMCKSVF 739
            Q+ S ++SNA+ F+  G  V +  ++               FSV++ G  I  D  +++F
Sbjct: 933  QVLSNLVSNAIKFTETGE-VKIAVSQQGETEVNGGIIVPLRFSVQDTGIGISPDAQENLF 991

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              F        RR  G GLGL+I    + L GG + + S  +  +T    +P ++
Sbjct: 992  QPFTQVDSSATRRYGGTGLGLTICRRIVQLMGGEIHVDSEVDVGSTFWFTVPLQQ 1046



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 14/159 (8%)

Query: 293 IDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           ID+ +   V  QL     IL NL     V + ++D        N+S VE + +++     
Sbjct: 645 IDIDELEKVQHQLHQANAILENLYATSPVGLCLYDHELKFVRINQSLVESYGLEVEDALG 704

Query: 349 NPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
             S++   EL   +    +   + N       +     +    +  W      + + +  
Sbjct: 705 KTSSEVLPELGRQIEPLLRQVLETNAPIISIELRGRTPADPAAEKVWSA----SYYPVDV 760

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETID 441
              + G   +  ++T +   E            Q E ++
Sbjct: 761 LEDQCGVGGVMIDITERTHAEDSLRESEAQLIQQKEALE 799


>gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 818

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 2/239 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +   AL++A+ +K+ F+ ++S+ELR+PL  IIGF ++LK    G LN++Q  +V+ 
Sbjct: 288 EHLQKAVSALKRANRMKSEFLANMSHELRTPLNAIIGFAEVLKDKLCGELNAEQEDFVKD 347

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LL ++NDILDL+ ++AG M+L Y + +++D + +V   +     +  +++K +
Sbjct: 348 IHSSGRHLLQMINDILDLSKIEAGKMELQYESFLVSDAIEDVYTILKGLAKKKQLQLKTV 407

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               +    ADR +  QI   +LSN++ F+ +  T+   AA  +G    SV ++G  I  
Sbjct: 408 IQEDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTITTNAAIVDGKMQVSVSDSGIGIKP 467

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + VF  F         +  G GLGL++    + +HGG + + S     +T    IP
Sbjct: 468 EDREKVFKEFWQADSSFSRKYEGTGLGLALTRRIVEMHGGKIWLKSEYGKGSTFYFTIP 526


>gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 587

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 91/393 (23%), Positives = 171/393 (43%), Gaps = 26/393 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G +      +  ++    K  T  K +    +  + EGV     D RI L 
Sbjct: 216 VRVVSDDEVGALGRGLNYMARRLKDTIKEITEEKNKIQAILTSMVEGVIAVDKDTRILLV 275

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           NPAF  ++    +++   T I  I             ++L   ++ +    R   Q    
Sbjct: 276 NPAFEKIFNVVADQVIGLTVIEGI-----------RNYELEKILLKALKKGRTINQEIEI 324

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +        +++PL   + ++  V V   +   R L          +++++ FV +VS+E
Sbjct: 325 VPLRRAFRVNVVPLMRKEKIVGVVAVFRDITEIREL----------EKMRSEFVANVSHE 374

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT+I GF + L    +        +++E I+  +  L  L+NDIL L++++A   +
Sbjct: 375 LRTPLTSIKGFVETLLDGAMED-REVARRFLEIINVETNRLSRLINDILSLSSIEAKNKE 433

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           ++ S +  N+++ +V   +     E NI ++      L   +A+   + Q+   ++ NA+
Sbjct: 434 ISRSPVNFNEIVEKVLPILVPMAEEKNITVETDIHPDLPVIMANEDLIKQVLINLVDNAI 493

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            ++ +   V+L A    G    SVK+ G  IP +    +F RF        R   G GLG
Sbjct: 494 KYTPENGRVVLSATPSGGGLKVSVKDTGIGIPPESMSRLFERFYRVDKARSRELGGTGLG 553

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+IV+  +  HGG + + S     +     +P+
Sbjct: 554 LAIVKHALEAHGGTIKVESQVGMGSKFTFYLPA 586



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + ++      IL ++   +   D++  +   N +F +++ +             + + 
Sbjct: 243 KEITEEKNKIQAILTSMVEGVIAVDKDTRILLVNPAFEKIFNV-------------VADQ 289

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIW 414
           +     +    N++  K  + ++ K    +++   +P  +   V V    R     G + 
Sbjct: 290 VIGLTVIEGIRNYELEKILLKALKKGRTINQEIEIVPLRRAFRVNVVPLMRKEKIVGVVA 349

Query: 415 MFENLTVQVDLETKYNT 431
           +F ++T   +LE   + 
Sbjct: 350 VFRDITEIRELEKMRSE 366


>gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 785

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 164/385 (42%), Gaps = 15/385 (3%)

Query: 416 FENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +T Q+       +   +     I  +++ + V  P+G I   N A  +L   +E  L
Sbjct: 250 FNIMTEQLQQTQGDMSAAREYTDNIIRSMNDAMIVVSPEGIIDRVNTATLNLLGYDEREL 309

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER----KSLQGTLELLSDSVLEYSI 530
                 + +A+  +     +   DL   I   F ++     ++  G L  +  S      
Sbjct: 310 IGSNIDKILASDAATGEGAAPVPDLAGLIPRGFINKVETFYRARDGRLIPVIFSASVMHG 369

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                   +   +++T+  +AE AL    E    A+  K+ F+ ++S+E+R+P+  ++G 
Sbjct: 370 AGKSAQGIVCVALDITERKQAEEALRIAKENAEAANRAKSQFLANMSHEIRTPMNGVLGM 429

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            DLL  S+   L+  Q +       S+  LL ++NDILD + ++AG  +L+ +   L + 
Sbjct: 430 LDLLMDSR---LDENQLRLASMAHGSADKLLEIINDILDFSKIEAGRFQLHMADFALRET 486

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG---- 705
           + EV      K  + NIR+    D  +  +   D  RL Q+   ++ NA+ F+  G    
Sbjct: 487 VREVADMFWVKAQDKNIRLICQIDDSVPNTVRGDGVRLRQVLINLVGNAVKFTENGQIFL 546

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              +++   +N    F V++ G+ IP D    +F+ F    +    +  G GLGL+I   
Sbjct: 547 GVSLMETTAENTQLRFEVRDTGTGIPLDAQPYIFDAFSQADNSMARRHEGTGLGLAISRE 606

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            +   GG + + S     +     +
Sbjct: 607 LVEAMGGTIGVRSEPGTGSLFWFTL 631


>gi|313674518|ref|YP_004052514.1| pas/pac sensor hybrid histidine kinase [Marivirga tractuosa DSM
           4126]
 gi|312941216|gb|ADR20406.1| PAS/PAC sensor hybrid histidine kinase [Marivirga tractuosa DSM
           4126]
          Length = 1296

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 111/509 (21%), Positives = 220/509 (43%), Gaps = 32/509 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  + ++     E++ N+ + +   ++N  L + +  F ++  ++   + TN       +
Sbjct: 392 EFQLQEKTKQYNELVENIPIGVYKLNRNGELNYMSPPFKKMIGVEGRDIDTN-------D 444

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTI 413
           F       PE L     K N +++      + +   +  GQT  V  TS P     G   
Sbjct: 445 FAHDI-VHPEDLEL-FLKANNYALDNYQYFNLEFRIVVKGQTKWVKATSQPSKDLDGNWY 502

Query: 414 W--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           W     ++T + + E K     +     I  ++E +  +   G I+  N +   + + ++
Sbjct: 503 WFGTLSDITQRKNTELKVQENERQLQNIISSMNEALLFYDSKGIIRSMNDSAAKILELDK 562

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV------ 525
             +     +           N         AI  + ++++     T++LL+         
Sbjct: 563 FEVVGKRLMSTPIKLLDVNGNFISAEQHPVAI--ALEEKKSLNDVTVQLLNTKTEKTIWI 620

Query: 526 -LEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                II   +AQ  ++TF ++++ V++E+ L E  ++   A++ K++F+ ++S+E+R+P
Sbjct: 621 AANIKIIEEEDAQWALVTFNDISNRVKSEKQLLEAKKSAEAANQAKSTFLANMSHEIRTP 680

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  +IGF+DLL+ + L  L   Q+ Y ++I  S+  LL ++NDILD + ++AG +KL   
Sbjct: 681 LNGVIGFSDLLRKTNLNIL---QTDYTQHIYNSAHSLLGIINDILDFSKIEAGKLKLQME 737

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
            I   +L+      I  +  + N+ + +  D  +   F AD  RL QI   +L NA+ F+
Sbjct: 738 EINGLELVESAVSFITFQASQKNLELLIEYDPDVPIYFEADELRLRQILINLLGNAVKFT 797

Query: 703 SKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
             G+  + +          F V + G  I     K++F  F        R   G GLGL+
Sbjct: 798 ESGNIALKVTKLHKEDKLKFEVIDTGIGISAKQQKNIFRAFEQADVSTTRKFGGSGLGLT 857

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I    + +    + + S     +  +  I
Sbjct: 858 ISNKLLKMMQSRLHLESEVNKGSNFSFSI 886



 Score = 42.6 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 35/222 (15%)

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHN-------------LTVAIAIFDQNRYLQ 329
           L    ++GI +++S+      +L  T  +L               L      + +N    
Sbjct: 246 LMPIYQSGIILEISERKKAEKELDRTKALLLQTNSITKTGGWSWNLITGEIEWTENTR-- 303

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
                   + E++  +    PS + + +F+  + ++    N K+  E  F  ++  +   
Sbjct: 304 -------SICEVEENY---QPSYEGVFDFVVDSARVE---NLKSTLEESFQKHQQFDLEL 350

Query: 390 DTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                  G      +   P              +N+  Q   E +     K   E ++++
Sbjct: 351 QVRSGK-GNVFWARIIGIPEISDNKVQRLYGTIQNIDDQKKNEFQLQEKTKQYNELVENI 409

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             GV     +G +   +P F+ +   E   +       +I  
Sbjct: 410 PIGVYKLNRNGELNYMSPPFKKMIGVEGRDIDTNDFAHDIVH 451


>gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
 gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
          Length = 587

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina
           mazei Go1]
          Length = 716

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 173/372 (46%), Gaps = 17/372 (4%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E +  +  + +   +D L+E      PD +I  +N A     K           +    
Sbjct: 348 AEQELKSQEREKKVLLDSLNELAIFVDPDFKIIWANKAALEHMKI---------DLEKAK 398

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTM 539
             C +   + +G       +    +      G   L + +      IP+ +        +
Sbjct: 399 GMCVKTTPDINGSLFGHMQLEKIFNSGNKESGEFSLENGTYWFVQAIPVTDDSGKIIGIL 458

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            TF ++T+    E+ L  + +    A+  K+ F+ ++S+ELR+PL +IIGF+DLL     
Sbjct: 459 GTFRDITERKAIEKLLQ-EKQVAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLCDQIY 517

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G LN KQ +Y   IS S   LLNL+NDILDL+ V+AG M+L+Y    L D LN VK  ++
Sbjct: 518 GKLNEKQLKYTNNISKSGKHLLNLINDILDLSKVEAGKMELDYREFELADRLNSVKSLLS 577

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 NI+I++  +  L +  AD  R +QI   ++ NA+ FS + + V ++A R     
Sbjct: 578 PIAARKNIKIEINVNKDLTTICADEARFVQIMYNLVDNAIKFSFENNPVRIEARRKGEFL 637

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +V + G  I  +    +F  F   A     + +G GLGLS+V+  +NLHGG+V   S 
Sbjct: 638 ETTVTDIGIGIKPEDQHKLFQPFSQVAAFSSKKFQGTGLGLSLVKQIVNLHGGYVWFRSI 697

Query: 778 DEGVTTINCRIP 789
               +T    IP
Sbjct: 698 PGEGSTFAFAIP 709


>gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
 gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
          Length = 587

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNV-LKRASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 969

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 108/652 (16%), Positives = 234/652 (35%), Gaps = 62/652 (9%)

Query: 178 LAETTLKCKKLSNHIS-VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           +   + +  +    ++     L +    L+  +         +  + +   T  +  Q  
Sbjct: 195 VHRLSKRYSRPVKRLANQMAALLEHAPMLIAIQKGQQQPHVTSRLWHQFYRTHPLPDQPP 254

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GE 288
           +       +E++ K   S+          ++    G+   +   R + S           
Sbjct: 255 LHPLLPTKQEDLTKINSSAQE--------LNVTLDGHEYHFLFTRFILSEELQEHAQPQI 306

Query: 289 AGIAIDVSKEITVNDQL----THTYEILHNLTVAI--AIFDQNRYLQFHNRSFVELWEID 342
             IA+D+S    V  QL       + ++ NL  A+     D    + F +     +    
Sbjct: 307 CTIALDISDHKLVERQLSESENRFHSLVSNLPGAVYRCNLDSAWSMLFISDGIERISGYP 366

Query: 343 -LAFLATNPSNDELLEFLR-SANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNG 397
             +F+  +         +      + EQ  ++    N     +    H+D    W    G
Sbjct: 367 KESFI--HNLERSFASIIHKDDLIMVEQKVFEGVNLNRSYHMEYRIIHQDGATRWVYEEG 424

Query: 398 QTLHVI-VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           +        +    G I+   ++T +  +E   +                  V    G  
Sbjct: 425 RAHFGKHGQALWLDGVIF---DITDRKQMEHTLHQNRTRLQAA--------VVASRAGTF 473

Query: 457 KLS--NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW----DLFAAIITSFDDE 510
             +  N       +  E      +   N  A   R  +  D        F A+  S+  +
Sbjct: 474 YYTIENDQNSWDARMLEIYGLEASQFDNNYAAWVRCIHPEDQHSTEQAFFRALSASYHTQ 533

Query: 511 RKSLQGTLELLSDSVLEYSIIPL-------PNAQTMLTFVNVTDSVRAERALTEKNEALR 563
              ++  +     S+                  Q      ++T+    E  L    E   
Sbjct: 534 TYDIEHRIVRPDGSIHHLRTQAWIQRDSQGKAEQVSGLVFDITEQKEVETTLRLAREQAE 593

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A+  K+ F+  +S+E+R+P+  +IG  ++L  +K   L+ +Q  Y+E +  +   LL+L
Sbjct: 594 SANRAKSDFLAAMSHEIRTPMNAVIGMGEVLLETK---LDQEQRHYIETLQHAGEALLDL 650

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +N ILDL+ +++G M+L      L+ ++ E  Q    +  +  I + +  +    +++  
Sbjct: 651 INAILDLSKIESGRMELVEQDFDLHKMVVETCQLFQVQCRKQGIELNLNWEESNPTYIHG 710

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D+ R+ QI   ++ NA+ F+ +GS TV +++       +F + ++G  IP D  +++F +
Sbjct: 711 DQARIRQILFNLIGNAVKFTDEGSVTVEIRSIEQEKTLLFKITDSGIGIPADKQETIFQK 770

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F         +  G GLGL+I    +    G + + S +   +  +  +P +
Sbjct: 771 FSQADSSLSRRHGGSGLGLTICRHLVEHMKGRIWVDSEEGQGSCFSFTLPCR 822


>gi|83591406|ref|YP_425158.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574320|gb|ABC20871.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 773

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 139/727 (19%), Positives = 252/727 (34%), Gaps = 66/727 (9%)

Query: 116 ENWLKFHHY--IKLSKATEKLRKEGQSFDLVAE----TQNDCA-----------IKIEGR 158
              L+ +      L +  + +      FD+       T    A           ++ +G 
Sbjct: 54  GRVLEGNAAFFEALGRPADAVLDHPAPFDVSIADAAATAGGPASPPPSRRRCAFLRADGV 113

Query: 159 ---------VSGSCAFLRILSLDGIYSEL--AETTLKCKKLSNHISVFKVLFDSLDFLVW 207
                    V    A L +++LDGI               +      F+ LFD     + 
Sbjct: 114 LVQATLGVGVLEGVAGLVLVTLDGIAGADGCPLRRRAEATVPCAADRFRSLFDLAPIGMA 173

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D       AN    +                    ++  +     +S L  +   + +
Sbjct: 174 MLDGERRWRQANSVMCRLLGVPFEGLAAKRWSDSVHPEDRGRDERFFASLLRNDDKASTT 233

Query: 268 --TLEHGNNKSYKIVRVLN---------SFGEAGIAIDVSKEITVNDQLTHTYEILHNL- 315
              L   + +   +   L          S     +  D+S+ +            L +L 
Sbjct: 234 NLRLVAADGRVVPVTLSLGVMRDGPKGQSDQILVLVQDISERVDWEATKAENEARLRSLI 293

Query: 316 ---TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
              T AI + D +  ++  NR+   L     A  A   S  E L+               
Sbjct: 294 NATTDAIFLLDPDGAIRVINRAGARLLG-TTARAAAGRSFYEFLD-----------APQA 341

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLET 427
           T +  +F    ++    +       + L ++V     G     G      ++T + + E 
Sbjct: 342 TERRALFGEVLATLLPVNGIERWGERWLDMVVFPVVDGDGKAMGVTLFTRDITSRREAED 401

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +   E  + +S  + +F P G + L N A R+     E+ L PG     + A  
Sbjct: 402 RARAAERHLLEATELMSAAMLLFDPQGILVLINSACRAALPDLEDILHPGLSFIELRAAI 461

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                           I         ++  +       L        +  T++   ++T+
Sbjct: 462 VARRLFVQAITESQGGIKGGTPGPAPIE--VRGKDGRWLLIRQSATSSGYTLILGTDITE 519

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQ 606
             R ERAL +  E    A+  K+ F+ ++S+ELR+PL  IIGF+D+ +    G L+    
Sbjct: 520 LKRRERALADAKEVAEYANRAKSEFLANMSHELRTPLNAIIGFSDITRHQMFGRLDNPVY 579

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y   I  S T LL +++DILDLA ++AG + L+   +    L++   Q +  +     
Sbjct: 580 VDYARNIYDSGTHLLEIISDILDLAKIEAGELGLDEEEVDAARLVDSAIQMVTPRATSKR 639

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKN 725
           I +  +  G L     D  RL Q+   +LSNA+ ++ +   V + A    GD    SV +
Sbjct: 640 IALTNLLTGDLPRLWCDPLRLKQVLINLLSNAVKYTQEDGAVAVTARLAGGDGLAISVID 699

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + E   +     F         ++ G GLGL +       H G ++I+S     TT
Sbjct: 700 TGIGMDEAGIQVAMTAFGQVESPYSRRQGGTGLGLPLTRKLTEAHQGCLTIASRPGEGTT 759

Query: 784 INCRIPS 790
           +   +P+
Sbjct: 760 VTILLPA 766



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 121/410 (29%), Gaps = 58/410 (14%)

Query: 194 VFKVLFDSLDFLV-WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
           + + + D+L         + G +L  N ++    E  G      +               
Sbjct: 34  MVRAILDALTLPAAVIMARDGRVLEGNAAF---FEALGRPADAVLDHPAPFDVSIADAAA 90

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYK---------------IVRVLNSFGEAGIAIDVSK 297
            +                  +    +               +V +    G  G  +    
Sbjct: 91  TAGGPASPPPSRRRCAFLRADGVLVQATLGVGVLEGVAGLVLVTLDGIAGADGCPLRRRA 150

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E TV         +     + +A+ D  R  +  N     L  +    LA    +D +  
Sbjct: 151 EATVPCAADRFRSLFDLAPIGMAMLDGERRWRQANSVMCRLLGVPFEGLAAKRWSDSV-- 208

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL----PNGQTLHV-----IVTSNP 408
                   PE        E  F+    ++    T +L     +G+ + V     ++   P
Sbjct: 209 -------HPEDRGRD---ERFFASLLRNDDKASTTNLRLVAADGRVVPVTLSLGVMRDGP 258

Query: 409 RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +G     + + ++++ +VD E             I+  ++ + +  PDG I++ N A   
Sbjct: 259 KGQSDQILVLVQDISERVDWEATKAENEARLRSLINATTDAIFLLDPDGAIRVINRAGAR 318

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L  T     +  +    + A        ++   LF  ++ +           +E   +  
Sbjct: 319 LLGTTARAAAGRSFYEFLDAP-----QATERRALFGEVLATLLP-----VNGIERWGERW 368

Query: 526 LEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKN 570
           L+  + P+ +             ++T    AE         L +A E+ +
Sbjct: 369 LDMVVFPVVDGDGKAMGVTLFTRDITSRREAEDRARAAERHLLEATELMS 418


>gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
 gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
          Length = 558

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++   D  +   
Sbjct: 424 AGEKEISLQVNA-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|71909161|ref|YP_286748.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71848782|gb|AAZ48278.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 982

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 194/517 (37%), Gaps = 44/517 (8%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF---LATNPSNDELLEF 358
             Q  H   +L N +  + I D++  +   N +F  L          +A    +  + + 
Sbjct: 327 RRQGEHAVALLKNASDGVHILDRHGVIVEANDAFCALLGYSRQEVIGMAIGQWDSSVKD- 385

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-- 416
                   E +  + ++  +   +++    KD    P      V        G   ++  
Sbjct: 386 -----VDVEAMLAQRFQSPVPDQFETRHRRKDGSEFP----AEVSFQPMVIEGVELLYAS 436

Query: 417 -ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++ +   E        +    ID L + + +   DG     N  F   + T E  + 
Sbjct: 437 SRDISDRKRAELVLARERSMYRTLIDTLPDLIWLKDADGVYLSCNRRFEQFFGTSEQEIV 496

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLP 534
             T    ++   + ++ E D   +     +  ++E   +  G  ELL  + +        
Sbjct: 497 GKTDYDFVSKELADFFREHDRKAMEKDGPSINEEEVPFASDGHRELLETTKMSMRDASGK 556

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADE------------------IKNSFVQHV 576
               +    ++T   R+E  L    + L++  +                   K++F+ ++
Sbjct: 557 LIGVLGIGHDITAKRRSELELDGHRQHLQELVDSQTADLMVAKEVAETASVAKSAFLANM 616

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  I G   +L+      +   QS+ ++ I  +S  LL ++ND+LDL+ ++AG
Sbjct: 617 SHEIRTPMNAITGMVHILRNM---GVTPPQSEKLDIIENASKHLLGIINDVLDLSKIEAG 673

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
              L    + +  L   V   +  K+ E  + + + +D    +   D  RL Q       
Sbjct: 674 KFTLEDVPLSIRALFGNVASMLGPKVREKGLVLNIEADDVPRNLRGDPTRLQQALLNFAG 733

Query: 697 NAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
           NA+ F+ +G       IL+    + +    V++ G  I  +    +F  F    +    +
Sbjct: 734 NALKFTERGHITLRARILEETELSANLCIEVEDTGVGIAPEALPKLFGAFEQADNSMTRK 793

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             G GLGL+I +    + GG   ++S+  G +T    
Sbjct: 794 YGGTGLGLAITKKIAEVMGGTAGVNSTPGGGSTFWFT 830



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 119/372 (31%), Gaps = 43/372 (11%)

Query: 101 QRIDIPQTDTDLLSF---ENWLKFHHYIKLSKATEKL----RKEGQSFDLVAETQNDCAI 153
             +  P  +  L++         F+H         +L    R     F L+    +D  +
Sbjct: 232 GELGAPIYNKTLIAGIEDGKRSFFYHTQTTPDGVSRLITYQRLSSMPFHLIVGLAHDDYL 291

Query: 154 ----KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
               +   +   +       +       L   +   ++  + +++ K   D     V   
Sbjct: 292 LPWYERLQQTVIALVIFAFATFALSLLLLGMLSSLRRQGEHAVALLKNASDG----VHIL 347

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
           D+ G I+ AN ++       G   Q+ IG +   +   +K   + +   ++ F   V   
Sbjct: 348 DRHGVIVEANDAF---CALLGYSRQEVIGMAIGQWDSSVKDVDVEAMLAQR-FQSPVPDQ 403

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAI-----------DVS----KEITVNDQLTHTYEILHN 314
               ++               + I           D+S     E+ +  + +    ++  
Sbjct: 404 FETRHRRKDGSEFPAEVSFQPMVIEGVELLYASSRDISDRKRAELVLARERSMYRTLIDT 463

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND----ELLEFLRSANKLPEQLN 370
           L   I + D +      NR F + +      +      D    EL +F R  ++   + +
Sbjct: 464 LPDLIWLKDADGVYLSCNRRFEQFFGTSEQEIVGKTDYDFVSKELADFFREHDRKAMEKD 523

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
             +  E    V  +S+ H++   L     + +   S    G + +  ++T +   E + +
Sbjct: 524 GPSINEE--EVPFASDGHRE---LLETTKMSMRDASGKLIGVLGIGHDITAKRRSELELD 578

Query: 431 TLVKVQGETIDH 442
              +   E +D 
Sbjct: 579 GHRQHLQELVDS 590


>gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
 gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
          Length = 558

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 164/373 (43%), Gaps = 28/373 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++ ++           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYISLVNRSYKEIF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYEAFLHAEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L     G+
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GA 361

Query: 602 LNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           + ++Q    ++  I   S  +  L+ D+LDL+ ++    KLN  T+ + +LL E+K  + 
Sbjct: 362 MENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLEEIKMVLE 421

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  +  I ++V    +  S + D  RL QIF  +++NA+ ++  G TV ++   D  + 
Sbjct: 422 NKSQDKEISLQVDV-LRHVSVIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLEDEHNA 480

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I ++    +F RF            G GLGLSIV+  +  H G V++ S 
Sbjct: 481 YIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESE 540

Query: 778 DEGVTTINCRIPS 790
               TT    +P 
Sbjct: 541 VGEGTTFTVALPK 553



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 100/285 (35%), Gaps = 42/285 (14%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E++ +         +++E L+ L       E        E +  ++ +    
Sbjct: 238 SLVNRSYKEIFHV---------TDEEYLDRLYY-----EAFLHAEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
           +    LP G   +   V     I T++   G + +F ++T    LE      +      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFLANVSHEL 343

Query: 441 DHLSEGVAVFGP---DGRIKLSNPAFRS-----LWKTEENRLSPGTHIRNIAATCSRYYN 492
                 +  F     DG   + N  F       + K  E        + +++    + + 
Sbjct: 344 KTPITSIKGFSETLLDG--AMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFK 401

Query: 493 ESDGWDLFAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPN 535
            + G      ++       E KS    + L  D +   S+I  P+
Sbjct: 402 LNMGTVEMKELLEEIKMVLENKSQDKEISLQVDVLRHVSVIGDPS 446


>gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1778

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 160/371 (43%), Gaps = 20/371 (5%)

Query: 431  TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +  Q  +I+   +G+A+   D   +  N A   ++   E     G   R I       
Sbjct: 1265 QEIAKQLASIEAAGDGIAIV-QDDLYQYVNHAHLVMFGYSEPEDLVGHSWRKI------- 1316

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNAQTMLTFVNVTD 547
            Y+ ++       +      +R      +    D      E S+    +   +    +++D
Sbjct: 1317 YSPTEIQRFENEVFPIVMRDRYWTGEAIATRQDGTSFAEELSLTLTEDNLLICVCRDISD 1376

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                E  L + N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ ++    G+L  +Q 
Sbjct: 1377 RRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGDRQK 1436

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Q ++ I  S++ LL L+NDILDLA ++AG MKL+ +   +  L       I  +  +  I
Sbjct: 1437 QALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGI 1496

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDNGDFI 720
             I V     L     D +RL Q+   +L+NA+ F+     + L+          D     
Sbjct: 1497 SINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVR 1556

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            F+V + G  I E+    +F  F         Q  G GLGLS+V+  + +HGG V++ S  
Sbjct: 1557 FAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKV 1616

Query: 779  EGVTTINCRIP 789
               +     IP
Sbjct: 1617 GSGSQFIFEIP 1627



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 96/558 (17%), Positives = 180/558 (32%), Gaps = 102/558 (18%)

Query: 162  SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
            + A  + ++ D +  EL E       L      +  L D +   V+  D+ GD ++ N  
Sbjct: 503  AIAIQQAIAYDDLQRELQERQQIQTCLQETEERYATLTDLIPVGVFRTDKEGDCIYVNEE 562

Query: 222  YKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            Y + T     ET G+ +Q ++        + I +    +      F E    LE G N+ 
Sbjct: 563  YCQMTGRIPGETIGLSWQISVHPED---SDRINEAWKQTQVNHHPFKEE-YRLEAGENQL 618

Query: 277  YKIVRVLNSF-------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR--- 326
            +   +++  F       G  G   D+S++     +       L +L  ++    + R   
Sbjct: 619  WVFGQIVPEFSVEETVNGYVGTITDISEQKAALCEREKAETALQDLNQSLEATVKQRTQE 678

Query: 327  ------YLQFH-NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE----------QL 369
                   LQ     + + +W+ D++       +     +  S  + P+            
Sbjct: 679  LSHLSDRLQLAIKSAQMGIWDWDISQNHLTWDDQMYKIYGVSPLECPQTVELWKNSLHPE 738

Query: 370  NWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVT----SNPRG---GTIWMFENLT 420
            + +  +  +    +        +    P+G  + +        NP G     I    ++T
Sbjct: 739  DAELTQAILQESLRGEREFNPEFRIVRPDGSIVFIKANALIIRNPEGEPQRMIGTNVDIT 798

Query: 421  VQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
                 E+    L++   +    IDH S  VAV    G I   N  F  +       L   
Sbjct: 799  ESKQAESDRQQLLRELSDLKLAIDH-SAIVAVTDASGVITYVNNRFCEISGYSSEELIGK 857

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPL 533
            +H         R  N       F A +       K   G +   S +      E +I+P 
Sbjct: 858  SH---------RIVNSRCHPPGFFANLWRTISSGKVWHGEICNRSKNGSIYWTESTIVPF 908

Query: 534  PN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL-----RSP 583
             N     +Q +    ++T   +AE  L +                   S+E+     ++P
Sbjct: 909  LNSHKKVSQYLAIRFDITARKQAEARLLDY------------------SHEIEDLYNKAP 950

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS--STILLNLVNDIL--DLATVDAGIMK 639
                 G+  L    +   +N  + Q++ Y         L     D L  D   +     +
Sbjct: 951  ----CGYHSLDAEGRYVKVNDTELQWLGYSREQLLGRRLA----DFLTPDSREIFESNFE 1002

Query: 640  LNYSTIVLNDLLNEVKQS 657
            L      L D+L E+  S
Sbjct: 1003 LFKQQGYLKDMLLEMISS 1020


>gi|150375914|ref|YP_001312510.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
 gi|150030461|gb|ABR62577.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
          Length = 917

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 96/383 (25%), Positives = 170/383 (44%), Gaps = 17/383 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE +     +     ++ +S+G  ++  D RI ++N  +  ++ + +     G   
Sbjct: 271 EKKKLEDEAERQRRTIAAALEVISDGFVLYDSDDRILVANSKYCEIFPSHKPNTLRGRSF 330

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT------LELLSDSVLEYSIIPLP 534
           R I         E+   DL       + DER  L          +   +  +  S   +P
Sbjct: 331 REIVEQNL----ETGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGERWVRISKRKIP 386

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  T+  + ++T+  + +  L         A+E K+ F+  +S+ELR+PL  IIG++++L
Sbjct: 387 DGGTVAVYTDITELKQRQVELERAKSHAESANEAKSQFLASMSHELRTPLNAIIGYSEML 446

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                     +    ++ I+++   LL L+NDILDL+ ++A  M +   T  L +LL +V
Sbjct: 447 IEEARDHKEEELVPDLDKIASAGRHLLTLINDILDLSKIEANKMDVFLETFSLAELLRDV 506

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++A  M  N        +  LG   +D+ +L Q    +LSNA  F+ KG  VIL+  R
Sbjct: 507 AATVAPLMARNGNAFTQDFEDDLGKMHSDQTKLRQNLFNLLSNAAKFT-KGGRVILRVRR 565

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               ++   +F V + G  +  +    +FN F        R   G GLGLSI  SF  L 
Sbjct: 566 EQRAEHDWLVFQVSDTGIGMTPEQQDRLFNAFTQADASTTRNYGGTGLGLSITRSFCRLI 625

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG V++ S     +     +P+K
Sbjct: 626 GGVVTVESEAGKGSVFTMEVPAK 648



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 56/155 (36%), Gaps = 9/155 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     Q       L  ++    ++D +  +   N  + E++           S  E++E
Sbjct: 276 EDEAERQRRTIAAALEVISDGFVLYDSDDRILVANSKYCEIFPSHKPNTLRGRSFREIVE 335

Query: 358 F-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             L +     E  + + W +    +++      D       + + +     P GGT+ ++
Sbjct: 336 QNLETGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGE-RWVRISKRKIPDGGTVAVY 394

Query: 417 ENLTV----QVDLET---KYNTLVKVQGETIDHLS 444
            ++T     QV+LE       +  + + + +  +S
Sbjct: 395 TDITELKQRQVELERAKSHAESANEAKSQFLASMS 429


>gi|294495506|ref|YP_003541999.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666505|gb|ADE36354.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 962

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/657 (19%), Positives = 242/657 (36%), Gaps = 65/657 (9%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            + GI +   + T + K     I  FK + D  ++     D  G+I + N  +       
Sbjct: 334 EITGIIASGIDVTER-KLAQKEIRKFKNIVDRANYGSLLLDLDGNITYINDYFAN---IH 389

Query: 230 GIVFQKAIGESRKLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNKSYKIV----- 280
           G   ++ IG+   +F  + +     R  +    + ++        H +   + ++     
Sbjct: 390 GYTPEEVIGKDISIFHNKNQLEETYRFRNKLIEDSDYKHREIWHTHKDGTEFPMLMEAVV 449

Query: 281 ---RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNR 333
              +  +    A   ID++      + L  +     N        + + D+N      N 
Sbjct: 450 HEDKQDSDRYIAATGIDITDMKNTENALRESEAKFRNYINKAPDGVFVADENGDYVEVNT 509

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
              E        L +    D           +P   + K  +     V K     +  + 
Sbjct: 510 EACETTGYSKEELLSMNLID----------LIPPDNHEKVIEGFETLVKKGYVDVEFNFL 559

Query: 394 LPNG--QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
             +G  +   V  T       +   ++ T    +E             I+ + +GV++  
Sbjct: 560 RKDGSRRWWRVTSTKLSDTRYLGFTKDTTESKLMEEALIKNKLFLNSIIESIKDGVSILD 619

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT---SFD 508
            D  I   N A    ++                  C   Y++ D       +I    + +
Sbjct: 620 ADMNIVRVNDAMNKWYEKNTPLEGKK---------CYEAYHDRDSPCTPCPVIRCMETGE 670

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNA------QTMLTFVNVTDSVRAERALTEKNEAL 562
            ER  +QG L        E    PL ++       T+    ++TD  RAE  L E     
Sbjct: 671 TERNIVQG-LPDPEPQWFELLAYPLKDSTTGEITGTVEFVKDITDHKRAEAELAEARLHG 729

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+  +  +    ++ +ELR+ L NIIGFT +L  +  G LN KQ ++++ I  S+  L+N
Sbjct: 730 REVSKTNSELKANLGHELRTSLGNIIGFTQMLHNNIYGRLNPKQQKHIQGIQKSAEHLMN 789

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++DIL+++ V+AG M+LN     + +LLNE+   +     + N+ I       +     
Sbjct: 790 LIDDILEISDVEAGKMELNIEMFSIIELLNEILIFLKPFAEDRNVEITTDIPEYIPEINV 849

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ ++ Q    ++ NA+ F+ +G  V +     + D  F V ++G  I     + +F  F
Sbjct: 850 DKAKIKQAIYNLIINAIHFTPEGRNVHISMEYSSYDLKFEVNDSGIGISPTQLEELFRPF 909

Query: 743 --------VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   V            LGLS+ + +I LHGG + + S      +    IP +
Sbjct: 910 KEIYSESGVKPPDSN------LGLSLAKEYIELHGGEIEVESESGAGNSFVFTIPIQ 960



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/461 (14%), Positives = 141/461 (30%), Gaps = 77/461 (16%)

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           F     T ND     +G V+G         + G   ++++   K K+L           D
Sbjct: 192 FRFYKATYNDR----DGNVAG---------IIGSMLDISDLKAKEKELREEKKKTGECLD 238

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG----------ESRKLFKEEIKK 250
           + + +    D  G++L++N    K +E  G   ++ +G           ++   ++ I +
Sbjct: 239 AAEVIFVVLDPEGNVLFSN---LKTSEILGYPEEEIVGKNWVDNFIPSRNKAHVRQIINE 295

Query: 251 RMISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSF---GEAGIAIDVSKEITVNDQL 305
            +     + + +   V  + +     + +  V   +     G     IDV++      ++
Sbjct: 296 IVSGKEEIVQGYQNPVLNISNKEFVIEWHNSVLRNDKGEITGIIASGIDVTERKLAQKEI 355

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-----PSNDELLEFLR 360
                I+        + D +  + + N  F  +       +         + ++L E  R
Sbjct: 356 RKFKNIVDRANYGSLLLDLDGNITYINDYFANIHGYTPEEVIGKDISIFHNKNQLEETYR 415

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIV-------TSNPRGGT 412
             NKL E  ++K               H++ WH   +G    +++         +     
Sbjct: 416 FRNKLIEDSDYK---------------HREIWHTHKDGTEFPMLMEAVVHEDKQDSDRYI 460

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
                ++T   + E             I+   +GV V   +G     N          + 
Sbjct: 461 AATGIDITDMKNTENALRESEAKFRNYINKAPDGVFVADENGDYVEVNTEACETTGYSKE 520

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL------LSDSVL 526
            L     I  I              D    +I  F+   K     +E        S    
Sbjct: 521 ELLSMNLIDLIPP------------DNHEKVIEGFETLVKKGYVDVEFNFLRKDGSRRWW 568

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             +   L + + +    + T+S   E AL +    L    E
Sbjct: 569 RVTSTKLSDTRYLGFTKDTTESKLMEEALIKNKLFLNSIIE 609



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 106/340 (31%), Gaps = 53/340 (15%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
               LR+ S +       E   K   L       K L D++   ++++D  G     N  
Sbjct: 77  GNLILRVKSEN-------ELEEKKISLDERAKFLKKLIDTIPGPIFYKDINGVYKGFNKI 129

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS---------SSALEKNFCETVSTLEHG 272
           + K  E  GI  +KA+  +     E+I   +                K   ET      G
Sbjct: 130 FCK--EILGIPCEKAVNHTLFELAEQIPPELAEIYHEHDMELIKKQRKQVYETKVRCADG 187

Query: 273 NNKSYKIVRVL------NSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIF 322
            NK ++  +        N  G  G  +D+S     E  + ++   T E L    V   + 
Sbjct: 188 ENKEFRFYKATYNDRDGNVAGIIGSMLDISDLKAKEKELREEKKKTGECLDAAEVIFVVL 247

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D    + F N    E+       +      D  +             N    ++ I  + 
Sbjct: 248 DPEGNVLFSNLKTSEILGYPEEEIVGKNWVDNFIP----------SRNKAHVRQIINEIV 297

Query: 383 KSSETHKDTWHLP-----NGQTL---HVIVTSNPRG---GTIWMFENLTVQVDLETKYNT 431
              E     +  P     N + +   H  V  N +G   G I    ++T +   + +   
Sbjct: 298 SGKEEIVQGYQNPVLNISNKEFVIEWHNSVLRNDKGEITGIIASGIDVTERKLAQKE--- 354

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            ++     +D  + G  +   DG I   N  F ++     
Sbjct: 355 -IRKFKNIVDRANYGSLLLDLDGNITYINDYFANIHGYTP 393



 Score = 45.7 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 99/280 (35%), Gaps = 20/280 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV-ELWEIDLAFLATNPSNDE 354
            K+I+++++     +++  +   I   D N   +  N+ F  E+  I     A N +  E
Sbjct: 91  EKKISLDERAKFLKKLIDTIPGPIFYKDINGVYKGFNKIFCKEILGIPCEK-AVNHTLFE 149

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI----VTSNPRG 410
           L E +      PE        +      +  + ++      +G+           ++  G
Sbjct: 150 LAEQIP-----PELAEIYHEHDMELIKKQRKQVYETKVRCADGENKEFRFYKATYNDRDG 204

Query: 411 ---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
              G I    +++     E +     K  GE +D       V  P+G +  SN     + 
Sbjct: 205 NVAGIIGSMLDISDLKAKEKELREEKKKTGECLDAAEVIFVVLDPEGNVLFSNLKTSEIL 264

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSV 525
              E  +     + N   +     N++    +   I++  ++  +  Q  +  +S  + V
Sbjct: 265 GYPEEEIVGKNWVDNFIPSR----NKAHVRQIINEIVSGKEEIVQGYQNPVLNISNKEFV 320

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           +E+    L N +  +T +  +     ER L +K     K 
Sbjct: 321 IEWHNSVLRNDKGEITGIIASGIDVTERKLAQKEIRKFKN 360


>gi|332703725|ref|ZP_08423813.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 946

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 112/645 (17%), Positives = 247/645 (38%), Gaps = 51/645 (7%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF--- 233
           +++E     ++L      F+  F+     + H D  G  L  N    +            
Sbjct: 167 DISERKKLDEQLKTSEIRFRSTFEQAAVGMAHLDMEGRFLLVNRRLCEILGYSSDELTQR 226

Query: 234 -QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN------SF 286
             + I  +  L K   +   +    +++   E     + G      +   L         
Sbjct: 227 TLREITHAEDLRKNLARIDQLMRGEIDRFSMEKRYHRKDGRIIWAMLTATLTRNEHGEPL 286

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEID 342
               +  D+++      +L    ++   L       I+++D++    + + +      + 
Sbjct: 287 FLLAVVEDITRRKQDEAELHRREDLFRTLAENSPDVISVYDRDLLRVYVSPAIEMETGLS 346

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQT- 399
              L         L  L++ + +  Q    +++E +   +++ E  T   T+    G+  
Sbjct: 347 RDDLVGK-----TLRGLQAESAVYTQEMVDSFEEGVRRTFETGEQVTVDFTYLTTAGKRK 401

Query: 400 ---LHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
              L +    +P G     + +  ++T   + E   +   +     +++  +G+  +  D
Sbjct: 402 FHQLRMAPLRSPDGEVRQVMSISRDMTALKETEADLHIREEHYRALVENSPDGIVRYDKD 461

Query: 454 GRIKLSNPAFRSLWKTEENRL-SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            R    NP F  +       +      I  ++    +    +    L      S +    
Sbjct: 462 LRYLYVNPCFARMTGLPAQAIVGNKLGILGLSLEMQQRVAGAVREALATGQEQSCE---I 518

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           + +G  E+    +++   +P            V    R    L +  +   +A+  K+ F
Sbjct: 519 AWEGPREI---KLIDIRFVP--EVGRDSEMKTVLAVSRDITDLAQAKQEAERANRAKSEF 573

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  IIG T+L    +     +K   Y+  +  S+  LL ++NDILDL+ 
Sbjct: 574 LASMSHEIRTPMNGIIGLTELALMQR---PKAKVRDYLGMVKQSADSLLGIINDILDLSK 630

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIF 691
           ++AG ++L  S     ++L  + +++  +     I      D ++ +    D  RL QIF
Sbjct: 631 IEAGRIELEKSFFSPREMLEGLFETMRIEAERKGITFSTKIDPRVPASLFGDEGRLRQIF 690

Query: 692 SKILSNAMDFSSKGSTVILKAARDNG---------DFIFSVKNNGSSIPEDMCKSVFNRF 742
             ++SNA+ F+  GS V ++   ++          + I S+++ G  IP +  +S+F  F
Sbjct: 691 VNLISNALKFTEAGS-VSVQVTAEDHMDLAKPGPVEIIASIRDTGIGIPANRLESIFEPF 749

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +     +  G GLGL+I +  I+L GG +++ S     +T +  
Sbjct: 750 DTGTRSTRHGGTGLGLTITKGLIDLMGGRITVKSRPGKGSTFSFS 794



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 102/301 (33%), Gaps = 22/301 (7%)

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVN--------DQLTHTYEILHNLTVAIAIFD 323
           G      I+  L +        D  +             D L     ++  L   +A+FD
Sbjct: 3   GQEHKDHIIENLRARLAEYERRDQERREAERGWWGESHLDALKVLKNVMDYLPEGMAVFD 62

Query: 324 Q-NRYLQFHNRSFVELWEIDLAFLATNPSNDEL--LEFLRSANKLPEQLNWKTWKENIFS 380
             +  L+  ++  + +    LA +   P    L   + L    + P   +       I +
Sbjct: 63  AKDATLRMVSKEGLRVIGQPLAKMQWQPREKTLHAWKVLYPDGETPVPFDELPSIRTIRT 122

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGG--------TIWMFENLTVQVDLETKYNTL 432
            + + E  +  +   +G  + VI+ + P  G         +  + +++ +  L+ +  T 
Sbjct: 123 GHVTVE-EEYVFQRADGSKIPVILNAGPIRGDREEEILGALISWLDISERKKLDEQLKTS 181

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                 T +  + G+A    +GR  L N     +     + L+    +R I        N
Sbjct: 182 EIRFRSTFEQAAVGMAHLDMEGRFLLVNRRLCEILGYSSDELTQ-RTLREITHAEDLRKN 240

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            +    L    I  F  E++  +    ++  ++L  ++    + + +     V D  R +
Sbjct: 241 LARIDQLMRGEIDRFSMEKRYHRKDGRII-WAMLTATLTRNEHGEPLFLLAVVEDITRRK 299

Query: 553 R 553
           +
Sbjct: 300 Q 300



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 138/439 (31%), Gaps = 47/439 (10%)

Query: 120 KFHHYIKLSKATEK----LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS----- 170
           +  H   L K   +    +R E   F +          + +GR+  +     +       
Sbjct: 230 EITHAEDLRKNLARIDQLMRGEIDRFSM-----EKRYHRKDGRIIWAMLTATLTRNEHGE 284

Query: 171 ---LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
              L  +  ++        +L     +F+ L ++   ++   D+    ++ + + +  T 
Sbjct: 285 PLFLLAVVEDITRRKQDEAELHRREDLFRTLAENSPDVISVYDRDLLRVYVSPAIEMETG 344

Query: 228 ----------TEGIVFQKAI--GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
                       G+  + A+   E    F+E +++   +   +  +F         G  K
Sbjct: 345 LSRDDLVGKTLRGLQAESAVYTQEMVDSFEEGVRRTFETGEQVTVDFT---YLTTAGKRK 401

Query: 276 SYKIVRVL--NSFGEA----GIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQN 325
            +++      +  GE      I+ D++        L     H   ++ N    I  +D++
Sbjct: 402 FHQLRMAPLRSPDGEVRQVMSISRDMTALKETEADLHIREEHYRALVENSPDGIVRYDKD 461

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
               + N  F  +  +    +  N     L   L    ++   +          S   + 
Sbjct: 462 LRYLYVNPCFARMTGLPAQAIVGN-KLGILGLSLEMQQRVAGAVREALATGQEQSCEIAW 520

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           E  ++   L + + +  +   +     + +  ++T     + +     + + E +  +S 
Sbjct: 521 EGPREI-KLIDIRFVPEVGRDSEMKTVLAVSRDITDLAQAKQEAERANRAKSEFLASMSH 579

Query: 446 GVAVFGPDGRIKLSNPAFRSLW--KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            +     +G I L+  A       K  +          ++    +   + S        +
Sbjct: 580 EI-RTPMNGIIGLTELALMQRPKAKVRDYLGMVKQSADSLLGIINDILDLSKIEAGRIEL 638

Query: 504 ITSFDDERKSLQGTLELLS 522
             SF   R+ L+G  E + 
Sbjct: 639 EKSFFSPREMLEGLFETMR 657



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 82/287 (28%), Gaps = 36/287 (12%)

Query: 59  YSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD------TDL 112
               +E+  +   + +L   +  +  V+D       +   +     + + D        L
Sbjct: 299 KQDEAELHRREDLFRTLAENSPDVISVYDRDLLRVYVSPAIEMETGLSRDDLVGKTLRGL 358

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQ--SFDLVAETQNDCAIKIEGRVSGSCAFLR--- 167
            +              +   +  + G+  + D    T        + R+    A LR   
Sbjct: 359 QAESAVYTQEMVDSFEEGVRRTFETGEQVTVDFTYLTTAGKRKFHQLRM----APLRSPD 414

Query: 168 --ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
             +  +  I  ++         L      ++ L ++    +   D+    L+ N  + + 
Sbjct: 415 GEVRQVMSISRDMTALKETEADLHIREEHYRALVENSPDGIVRYDKDLRYLYVNPCFARM 474

Query: 226 TETEGIVFQKAIGESRKLF------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
           T   G+  Q  +G    +       ++ +   +  + A  +     ++       K   I
Sbjct: 475 T---GLPAQAIVGNKLGILGLSLEMQQRVAGAVREALATGQEQSCEIAWEGPREIKLIDI 531

Query: 280 VRVLNSF------GEAGIAIDVSKEITVNDQLTHT----YEILHNLT 316
             V              ++ D++       +         E L +++
Sbjct: 532 RFVPEVGRDSEMKTVLAVSRDITDLAQAKQEAERANRAKSEFLASMS 578


>gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
 gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
          Length = 567

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 214 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 260

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 261 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 317

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 318 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 373

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 374 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 432

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 433 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 491

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 492 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 551

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 552 EGTTFTVVLPK 562



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 189 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 246

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 247 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 292

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 293 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 345


>gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
 gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens
            CN-32]
          Length = 1771

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/717 (16%), Positives = 264/717 (36%), Gaps = 67/717 (9%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL--SLDGIYS 176
            L   H     +     R    +       ++  A+K +G    +   L IL   +DG   
Sbjct: 565  LGSEHVRYRQQFLRDGRDRSMA-----NARHVRAVKADGNEFIAEIALSILPADVDGSRQ 619

Query: 177  ELAETTLKCKKL------SNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTET 228
              A      +KL       +    F+ L  ++   V+     +   + + + +    T  
Sbjct: 620  VAASIRDMTQKLAIEQKIRDSELRFRGLVANIPGAVYRTRIGEVWVMEYISDNIADITGY 679

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
                F +    +      E  + +      +    +    +E+        +R ++  G+
Sbjct: 680  AASQFIENRQRNFSSLILEEDRPLCHQHIDKALAQQETFEVEYRIRHRDGSIRWVHEKGK 739

Query: 289  AGIAI------------DVSKEITVNDQLTHTYEILHNLTVAIA--IFD------QNRYL 328
            A                D+++   V+ +L  + + L N+T +I   ++        +R  
Sbjct: 740  ASYNEEGFPLWFDGSIDDITESKLVSVELEASRQQLTNITESIPCTVYQLRWRSPSDRAF 799

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
             F + + + +  +    L      + + E +    +           ++     +     
Sbjct: 800  TFLSGAALPMLGLQRDNLMN--DFNIIAERIFDEERPEVVRALAGKSDDKLQWIR----- 852

Query: 389  KDTWHLPNGQTLHVIVTSN----PRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDH 442
            +  +  PNG    +   ++         IW     ++T +  +E +            D 
Sbjct: 853  EFRYRHPNGSIRWMEAGASGHVESDDVIIWNGYVMDITQRKTMEQELALSEAHFRALFDG 912

Query: 443  LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             + G+      G I   N  F          L     I ++ +   R   ++   DL   
Sbjct: 913  ATIGIINIDAKGLILDCNDQFCEDIGRAREELRN-IPIFDVLSPQDREIAKAQFKDLADG 971

Query: 503  IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTE 557
             +  +  ER  ++ + E +    +  ++  L +        +++ V++T+       L  
Sbjct: 972  KVDHYRGERSFIRPSGEPM---WMTVNVSALFDCHHQFESAVVSMVDMTELKLLSDELLI 1028

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              E    A + K  F+ ++S+E+R+P+  IIG + L   +   +L+ KQ  YVE I  +S
Sbjct: 1029 AKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT---ALDKKQKNYVEKIERAS 1085

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL+++NDILD + ++AG + ++     L+ +L ++    + K+    + +       +
Sbjct: 1086 QSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNV 1145

Query: 678  G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPE 732
                  D  RL Q+   +++NA+ F+ +G  ++    ++   D+    FSV+++G  + +
Sbjct: 1146 PRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRDSGIGLTD 1205

Query: 733  DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +    +F  F        R   G GLGL+I +  + L GG++ + S     +T    
Sbjct: 1206 EQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFT 1262


>gi|326795319|ref|YP_004313139.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
 gi|326546083|gb|ADZ91303.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
          Length = 1479

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 125/700 (17%), Positives = 253/700 (36%), Gaps = 65/700 (9%)

Query: 143  LVAETQNDCAIKIEGRVSGSCAFL----RILSLDGIYSELAET-----------TLKCKK 187
               E+     I ++G+  G+  F     R L       EL +             L  + 
Sbjct: 367  FQLESYIGVQIIVDGKPWGTLNFSGPDKRRLPFQEDEYELIQLLGTWVGNELTRELSHQA 426

Query: 188  LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLF-- 244
            +    +  + +  S    +   D  G I + N +  K         ++ +G    + F  
Sbjct: 427  IRGIEAKQRSILASSHDGIIGIDSEGQITFVNQAVAKLV---SYSQEELVGRPFVECFYS 483

Query: 245  -----KEEIKKRMISSSALEKNFCETVSTLEHGNNKS----YKIVRVLNS----FGEAGI 291
                        + ++   +K+  +    L   + ++    + +  V +      G    
Sbjct: 484  VDKNGDRYTPCVISTAILDKKDVQDRRVYLIKKSGQAIAISFSVATVTDENDRYQGSVFT 543

Query: 292  AIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
              D S+++    QL    ++  +L      A+ +  +N  +Q  N +F  L+     +L 
Sbjct: 544  FQDCSEQVKFEAQLFDQIQLFKSLFVDAPEAVVVVGKNGLIQMVNPAFCHLYGASEEYLV 603

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTW----KENIFSVYKSSETHKDTWHLPNGQTLHVI 403
              P      E  R+  +L    + +T     K++ + ++  SE      H+ +     + 
Sbjct: 604  ATPLQALCAEKDRAQFELTHVFDEETKVLESKQSTYKMFDGSE------HVLDSIGSVLR 657

Query: 404  VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                   G I    ++T ++  E +            D +  G   +         +   
Sbjct: 658  DRDGEAVGFILHLRDITEKLKTEEEIFKSQSRLSMAADSVGIGTWEWDVTTNQLEIDEWM 717

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG----TLE 519
              ++  EE  +             S Y       D  A     F D    +      T  
Sbjct: 718  YRIFGFEECSIDETFDKWQSLLFPSDYERLLLEIDELAQEKCEFLDSDYRITRPDGQTRY 777

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            +  ++ + Y+ I  P  + +   +++T     E  L +  E      + K+ F+  +S+E
Sbjct: 778  IKVNAKITYNAIFDP-IRMIGVNLDITTRKETELVLQKAKEQAELTSKAKSDFLATMSHE 836

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            +R+PL  ++G  +L+  +    L+ +Q   ++ I  S   LL L+N+ILD + ++AG + 
Sbjct: 837  IRTPLNGVLGMAELMSHT---DLSPEQLTQLDVIRDSGEGLLELINEILDFSKIEAGHLV 893

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
            L      L   + ++   +  K  +  I + V  + +     V D  R+ QI + ++SNA
Sbjct: 894  LESIDFNLEKAIFDIAHLLIVKAEDKGIELLVEFEQRCPRMLVGDVYRIKQIITNLVSNA 953

Query: 699  MDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
            + F+S+G  VI  + +       D   SV + G  I E + +++F  F        R   
Sbjct: 954  IKFTSEGEVVIRVSGKPLPSGGVDLRLSVSDTGIGIQESVQRNLFKAFTQADSSTTRQYG 1013

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IPS 790
            G GLGL+I     NL  G + + S     +  +    +P 
Sbjct: 1014 GTGLGLAITSQLTNLMDGTIEVESQLGKGSCFSVSMVLPK 1053


>gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 637

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/647 (18%), Positives = 240/647 (37%), Gaps = 71/647 (10%)

Query: 178 LAETTLKCKKLSNHIS---VFKVLFDSLDFLVWHRDQAGDILWANI-SYKKNTETEGIVF 233
           L +   K +K         + +V+FD    L+      G +L  N  ++     T+    
Sbjct: 25  LRKMRAKERKQMEEAESYALLRVMFDQSSSLISVLKPDGTVLDINSSAFDVIGGTKSEAI 84

Query: 234 QKAIGESR-----KLFKEEIKKRMISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSF 286
            K   E+         +E +++ + S++  E    E       G      + +  V +  
Sbjct: 85  GKPFWETLAWVHSPELQERLRQAIKSAAQGEFVSFEATHPTADGKLIYVDFSLKPVKDDD 144

Query: 287 GEAGI----AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G   +      D++K     + L             +A+      +   N    E W   
Sbjct: 145 GNVVLLLPEGRDITKRREAEEALRE-----------VAV---KYRIVADNTYNWEFWLSP 190

Query: 343 LA-FLATNPSNDELLEFLRSA--------NKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
              F+ T+PS   +                 +    +   W ++   + ++    +    
Sbjct: 191 ADRFIYTSPSCRRISGHGAEEFNADPGLLRSIIHPDDRHLWTDHRHDITQTKALGELELR 250

Query: 394 --LPNG--QTLHVIVTS--NPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLS 444
              P+G  + +H +     +  G  +     F ++T +   E K   L       ++   
Sbjct: 251 IVRPDGDIRWVHHVCIPVFDDNGNHLGTRGSFSDITERKQAEEKNLRL----AVMVESSD 306

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           + +     DG I   N     ++   E+ +        I A       + D        I
Sbjct: 307 DAIVGKTLDGIITSWNRGAEKIFGYSEDEVLGKPITMLIPAENVDEVLQMDERLRHGEHI 366

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             F+  R+   G L  +S      S  P+ +AQ  +  V+       ER          +
Sbjct: 367 EHFETVRRRKDGQLIHMS-----LSYSPIRDAQGRVVAVSTIGRDITERK---------E 412

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +++K+  +  VS+E+R+PLT ++G+T+ +  +++ +   +Q +Y+      S  L  L+
Sbjct: 413 MEQMKDEMISAVSHEMRTPLTAMLGYTEFMLDNEVPA--DQQREYLRITLHESEKLNELI 470

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            + LDL  + +    + +  + L  LL E           ++I +   SD  L     D 
Sbjct: 471 GNFLDLQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITLDCPSD--LPRICGDN 528

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           ++L Q+F+ ++SNA+ +S KG  V + A R+    + +V++ G  I     + +F RF  
Sbjct: 529 KQLRQVFNNLVSNAVKYSPKGGAVRVAARREKDCVVITVRDEGIGISPQAVERIFERFYR 588

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +   R   G GLGL++V   +  HGG V + S+    +T    +P
Sbjct: 589 VNNTACRVFGGTGLGLALVREIVTAHGGEVWVESTLGKGSTFFVSLP 635


>gi|294495585|ref|YP_003542078.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666584|gb|ADE36433.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 736

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 106/578 (18%), Positives = 214/578 (37%), Gaps = 68/578 (11%)

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
            G+   +           A IA+  S+    +         I       I   D    + 
Sbjct: 166 DGDFTEHDARLAKTFGEHAAIALRNSRNFELLKKSEQRYRSIFETAANLITSVDSKGIIV 225

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N         +   +  +P +  L               + + +  I + Y   + +K
Sbjct: 226 DCNNQIKNFLGYEKDEIIGHPMSKILHPDYHD-------KAFGSLQRIIVTGYSKDKEYK 278

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTI-------WMFENLTVQVDLETKYNTLVKVQG----- 437
                 NG+ +  I+ S+    +         +  ++T +     + N L          
Sbjct: 279 MV--KKNGELIDAIINSSGINKSAEGYERINCIISDITERNQNLQRINFLTDTLRCIRDV 336

Query: 438 -ETI------DHLSEGVA---------------VFGPDGRIKLSNPA-FRSLWKTEENRL 474
            +TI      D L +G+                +F  + +I +   + F   ++   + L
Sbjct: 337 NQTIVKESNPDDLLQGICDSLVRYNTYTNVWLCLFDENKKINIIKESGFSDKFEEFVHSL 396

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +               +   I     DE+      +  L     EY II L 
Sbjct: 397 KNVGLPYCVQRVLKERDYIILDNPVNECIDCPLKDEKNGTAIFVSKLQYGPKEYGIISLS 456

Query: 535 NAQTMLTFVNVTD---------------------SVRAERALTEKNEALRKADEIKNSFV 573
             +       +                         + E +L E      +A+  K+ F+
Sbjct: 457 IPEKHANDEEIISLSKEVVGDISFSLYNLELEATRQKGEESLIEGRIVAEEANRTKSEFL 516

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PL ++IGF+ +L+T+    L+ K+ +YV+ I  S + LL L+N+ILD++ V
Sbjct: 517 ANMSHELRTPLNSVIGFSQVLETNSSNHLDDKEQKYVKNIYESGSHLLELINNILDISKV 576

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G M     T+ L +++++    +     + ++ + +    +      DR +  +I   
Sbjct: 577 ESGKMDYLPETVNLTEIIDDTIVLVEPMAKKKSVDLHLNIKSEDLEIHVDRLKFKEIMYN 636

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           +LSNA+ F+ +  TV + +   N +F  SV + G  +P++  +S+F+ F        R  
Sbjct: 637 LLSNAIKFTPEKGTVSVNSKCVNKNFQISVSDTGIGVPKEKFESIFDPFKQVDSTSSRSF 696

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL++V  ++ +HGG + + S     +T    +P
Sbjct: 697 GGTGLGLALVRKYVEMHGGEIWVESEVGVGSTFTFTLP 734


>gi|307151259|ref|YP_003886643.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981487|gb|ADN13368.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1067

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 148/846 (17%), Positives = 306/846 (36%), Gaps = 115/846 (13%)

Query: 43  LLIRQRNSLAKKVNETYSFLSEICDQLSKY----HSLLTENN--CLTI------VWDGKD 90
             + Q  +L  K  +  + L ++  +  +                L +      +WD   
Sbjct: 2   ATLEQYQALELKNQQLQAELDKLRQEQQRSLEIQEKFTESEERWQLVLRGNNDGIWDWNL 61

Query: 91  ETPEIIGQLHQRIDIPQTDTDLL-SFENWLKFHHYIKLSKATEKLRKEGQS--------F 141
           +T E+      +  +   D +L   F+ W K  H   + +  E L +  +         F
Sbjct: 62  KTNELFLSPRWKEMLGYQDDELENHFKTWRKLLHPKDVERVMEVLHEHFEGKTAYYVVEF 121

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            L  +  +   I   G+     A  + + + G ++++++   +        S+ + L D 
Sbjct: 122 RLQCKDGSYKWILSRGQALWD-ATGKPVRMAGSHTDISDRKARQ-------SLLRSLIDC 173

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMIS-----S 255
           +  L++++D  G     N ++ +    +    ++ +G+S   LF  +I  ++        
Sbjct: 174 IPDLIFYKDAQGIYRVCNRAFAEFLGRKD---KEILGKSDFDLFSRKIASQIHHYDTLLM 230

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTY 309
                +  E     ++GN +                 G  GI+ D++        L    
Sbjct: 231 QQNNSHRNEEWVAYKNGNRRLLDTFTTPVLGSDGEVLGIIGISRDITDRKQKEQALEQQA 290

Query: 310 E---ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT---------------NPS 351
           +   +L  ++  +   D N  + F  ++  E    + A++                 NP 
Sbjct: 291 KRDHLLSCISRPLIDQDLNTAINFILQALGECTGSEHAYIIRFSDCQASWSMSYEWCNPH 350

Query: 352 NDELLEFLR-SANKLPEQLNW--------KTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           N +++  L    N+  +   W        KT K N       SE   +   L    T  V
Sbjct: 351 NPKIVSELEKCQNQSVDTFPWFTKQLLSGKTVKINRLQDL-PSEATAEKEALLKSLTPCV 409

Query: 403 IVTSNPRGG-------------TIWMFENL---------TVQVDLETKYNTLVKVQGETI 440
           ++      G               W  E++             +   +    ++      
Sbjct: 410 LIVPMINAGKTVGYLGLDAGSHKTWTKEDVHLLKLIGEFIAIAESRHEAQAALEESQARF 469

Query: 441 DHLSE----GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
             + +     +     + +I L N A    +  +   +   +    + +     + +   
Sbjct: 470 AGILDNANEAIISIDENQQITLFNHAAEKTFGYQAQEVIGQSFNLLLPSDYGEIHQQYIN 529

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM---LTFVNVTDSVRAER 553
               A+        R  + G  +  +  + E SI  L     +       ++T+  +AE 
Sbjct: 530 TFAKASQTAKQMGGRNPVFGRRQDGTAFLAEVSISKLVQRGKILFTAIVRDITERKQAEE 589

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  EA   A+  K+ F+  +S+ELR+PL  I+GFT +L  +   +L  ++   +E I
Sbjct: 590 ALKQAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQVLARN--SALKEEEKTNLEII 647

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S   LL+L+NDIL+++ ++AG    N S+  L  LL+ ++  +  +     +++   S
Sbjct: 648 SRSGEHLLDLINDILEMSKIEAGRTTFNQSSFDLYRLLDSLEDMLRLRAEAKGLQLIFDS 707

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------DFIFSV 723
              +  ++  D  +L Q+   ++ NA+ F+ +G  V L+                  F V
Sbjct: 708 ASDVPQYIQTDEGKLRQVLINLIGNAIKFTDEGG-VTLRVKSGGKVPLESPKMATITFEV 766

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I  D   ++F  F       +  +G GLGL I + F+ L GG + +SS     +
Sbjct: 767 EDTGPGIALDEIDNLFEAFGQTETGRKSNQGTGLGLPISKKFVELMGGEIRVSSVPGNGS 826

Query: 783 TINCRI 788
                I
Sbjct: 827 LFAFDI 832


>gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 753

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 111/496 (22%), Positives = 207/496 (41%), Gaps = 26/496 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            +  +  EI++NL   +   D    + + + +           +    S  +L++     
Sbjct: 126 RERMNGREIINNLNDVVYTIDLKGNVVYISSAAERYGFFPRNIIGK--SVFDLIDR-EDH 182

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           + L +Q+N    +    S+ + +     T  +   +T   IVT +  G    +   LT Q
Sbjct: 183 DYLRQQMNKLISERQATSLLRVTNAEGKTRQV---RTSSRIVTQH--GMPFSITGLLTDQ 237

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            D   +   ++K+    ++  +  + +   +G ++  N AF                I  
Sbjct: 238 TDQSFREQQILKLTQ-AVEQSANVIVITDLEGNMEFVNRAFERSTGY-----GRQEAIGQ 291

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----Q 537
                   Y   + +      I+S +          +  S    +  I P+ N       
Sbjct: 292 NPRILKTDYLSEEVYKNLWETISSGNVWEGKFHNKRKDGSTYWEKALISPIKNDAGTIIN 351

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    ++T  +  ++ L +  E   +A  +K+ F+ ++S+E+R+PL  I+GFTDLL   
Sbjct: 352 FVAVKEDITKELAYQQELEQAKEVAEEASRLKSEFLANMSHEIRTPLNVILGFTDLLLDE 411

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              + ++K+  ++  I  S   LL L+NDILD + ++A  + L         LL  +K  
Sbjct: 412 ---TEDAKKRDHLHLIKDSGKNLLELINDILDFSKIEANKLDLEIDVFDPKALLQNIKGM 468

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + +     +   V  D  L   + D+ R+ QI   +LSNAM F+  GS V L+A  +N 
Sbjct: 469 FSLEAKRKGLDFTVEHDVPLPELLGDQYRIRQILMNLLSNAMKFTEVGS-VSLRAHYENT 527

Query: 718 DF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               FSV + G  IPE+  K +F+ F       +R+  G GLGLSI    ++L GG++++
Sbjct: 528 GIMRFSVSDTGIGIPEESRKQIFHPFEQLDGSAKRKFSGTGLGLSITRRLVHLMGGNITL 587

Query: 775 SSSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 588 ESKAGRGSTFTIELPL 603



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 91/262 (34%), Gaps = 32/262 (12%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI----KK 250
           + + ++L+ +V+  D  G++++ + +     E  G   +  IG+S   L   E     ++
Sbjct: 132 REIINNLNDVVYTIDLKGNVVYISSA----AERYGFFPRNIIGKSVFDLIDREDHDYLRQ 187

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVNDQL 305
           +M    +  +       T   G  +  +     + +    F   G+  D + +     Q+
Sbjct: 188 QMNKLISERQATSLLRVTNAEGKTRQVRTSSRIVTQHGMPFSITGLLTDQTDQSFREQQI 247

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELLEFLRSANK 364
               + +      I I D    ++F NR+F           +  NP        +   + 
Sbjct: 248 LKLTQAVEQSANVIVITDLEGNMEFVNRAFERSTGYGRQEAIGQNP-------RILKTDY 300

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMF----E 417
           L E++    W+          + H       +G T       +P     GTI  F    E
Sbjct: 301 LSEEVYKNLWETISSGNVWEGKFHNK---RKDGSTYWEKALISPIKNDAGTIINFVAVKE 357

Query: 418 NLTVQVDLETKYNTLVKVQGET 439
           ++T ++  + +     +V  E 
Sbjct: 358 DITKELAYQQELEQAKEVAEEA 379


>gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 587

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|293372990|ref|ZP_06619359.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632058|gb|EFF50667.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 820

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/636 (18%), Positives = 250/636 (39%), Gaps = 43/636 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ + +   ++L       + +        W  +   +I +  + Y      E +    
Sbjct: 45  RDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNI-FHYLGYTGVLCEENVQNL- 102

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKIV--------RVLNS 285
           AI +  +L  EE ++  +       ++   E++S     N + + +         R   S
Sbjct: 103 AIEKYVELIVEEDRQSFMEWCRVNEKELNMESISYRVRLNGEIFYMRIQTYLREQRSDGS 162

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           F   G   +++      + +      ++N   +I     +  + F NR F     +    
Sbjct: 163 FNIEGYIQNITDIQHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF-----LYNHG 217

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---------N 396
           ++ N    +L  +  +A+        + W E    V     ++    H            
Sbjct: 218 ISENEDISQLKIYNVAADM----PTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAYE 273

Query: 397 GQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPD 453
           G   +V  T++    + W F  +++ ++  E +   L ++   TI++L  G+ V     D
Sbjct: 274 GTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINND 331

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R    N    +     +N               +    + D           +  E K 
Sbjct: 332 FRYIYRNREAYN-RDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEGKD 390

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G + +L    +      L +   +    ++T+    +R L    E    +D +K++F+
Sbjct: 391 RNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKAEMSDSLKSAFL 450

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL L+N+ILDL+ +
Sbjct: 451 ANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQLINEILDLSKI 507

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G ++ ++    L++L  EV  +   +  +  + +   S  +      D+ R+ Q+ S 
Sbjct: 508 ESGTIEFSFGPASLHNLCREVHDAHIFRTPQ-GVSLVYESSDESLMIETDKNRVFQVISN 566

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA+ F+ +GS +       +   +F V + G+ I  +    VF RF    +  Q  G
Sbjct: 567 LIGNAVKFTKEGS-ISYGYKLADNQIVFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--G 623

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 624 TGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 118/365 (32%), Gaps = 50/365 (13%)

Query: 109 DTDLLSFENWLKFHHY-IKLSKATEKLRKEGQSFDLVAET-----QNDCAIKIEGRVSGS 162
           + D  SF  W + +   + +   + ++R  G+ F +  +T     ++D +  IEG     
Sbjct: 113 EEDRQSFMEWCRVNEKELNMESISYRVRLNGEIFYMRIQTYLREQRSDGSFNIEGY---- 168

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
                I ++  I               N I+      ++    ++     G I++AN  +
Sbjct: 169 -----IQNITDIQ-----------HRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF 212

Query: 223 KKN---TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK--NFCETVSTLEHG----- 272
             N   +E E I   K    +  +  +E               NF     +  +      
Sbjct: 213 LYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAY 272

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI--FDQNR 326
               Y +            A D+S+ I    Q+    +     ++NL   I +   + + 
Sbjct: 273 EGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINNDF 332

Query: 327 YLQFHNRSF--VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              + NR     +L++ D        ++ +    + +  K  E +   T  + +    + 
Sbjct: 333 RYIYRNREAYNRDLYKNDP----VGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEG 388

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            + + +   L + + + V          + +  ++T    ++ +  +  +   E  D L 
Sbjct: 389 KDRNGNMIIL-DKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEK-AEMSDSLK 446

Query: 445 EGVAV 449
                
Sbjct: 447 SAFLA 451


>gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
          Length = 1771

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/717 (16%), Positives = 264/717 (36%), Gaps = 67/717 (9%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL--SLDGIYS 176
            L   H     +     R    +       ++  A+K +G    +   L IL   +DG   
Sbjct: 565  LGSEHVRYRQQFLRDGRDRSMA-----NARHVRAVKADGNEFIAEIALSILPADVDGSRQ 619

Query: 177  ELAETTLKCKKL------SNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTET 228
              A      +KL       +    F+ L  ++   V+     +   + + + +    T  
Sbjct: 620  VAASIRDMTQKLAIEQKIRDSELRFRGLVANIPGAVYRTRIGEVWVMEYISDNIADITGY 679

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
                F +    +      E  + +      +    +    +E+        +R ++  G+
Sbjct: 680  AASQFIENRQRNFSSLILEEDRPLCHQHIDKALAQQETFEVEYRIRHRDGSIRWVHEKGK 739

Query: 289  AGIAI------------DVSKEITVNDQLTHTYEILHNLTVAIA--IFD------QNRYL 328
            A                D+++   V+ +L  + + L N+T +I   ++        +R  
Sbjct: 740  ASYNEEGFPLWFDGSIDDITESKLVSVELEASRQQLTNITESIPCTVYQLRWRSPSDRAF 799

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
             F + + + +  +    L      + + E +    +           ++     +     
Sbjct: 800  TFLSGAALPMLGLQRDNLMN--DFNIIAERIFDEERPEVVRALAGKSDDKLQWIR----- 852

Query: 389  KDTWHLPNGQTLHVIVTSN----PRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDH 442
            +  +  PNG    +   ++         IW     ++T +  +E +            D 
Sbjct: 853  EFRYRHPNGSIRWMEAGASGHVESDDVIIWNGYVMDITQRKTMEQELALSEAHFRALFDG 912

Query: 443  LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             + G+      G I   N  F          L     I ++ +   R   ++   DL   
Sbjct: 913  ATIGIINIDAKGLILDCNDQFCEDIGRAREELRN-IPIFDVLSPQDREIAKAQFKDLADG 971

Query: 503  IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTE 557
             +  +  ER  ++ + E +    +  ++  L +        +++ V++T+       L  
Sbjct: 972  KVDHYRGERSFIRPSGEPM---WMTVNVSALFDCHHQFESAVVSMVDMTELKLLSDELLI 1028

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              E    A + K  F+ ++S+E+R+P+  IIG + L   +   +L+ KQ  YVE I  +S
Sbjct: 1029 AKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT---ALDKKQKNYVEKIERAS 1085

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL+++NDILD + ++AG + ++     L+ +L ++    + K+    + +       +
Sbjct: 1086 QSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNV 1145

Query: 678  G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPE 732
                  D  RL Q+   +++NA+ F+ +G  ++    ++   D+    FSV+++G  + +
Sbjct: 1146 PRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRDSGIGLTD 1205

Query: 733  DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +    +F  F        R   G GLGL+I +  + L GG++ + S     +T    
Sbjct: 1206 EQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFT 1262


>gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 567

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 214 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 260

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 261 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 317

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 318 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 373

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 374 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 432

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 433 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 491

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 492 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 551

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 552 EGTTFTVVLPK 562



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 189 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 246

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 247 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 292

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 293 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 345


>gi|288940787|ref|YP_003443027.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896159|gb|ADC61995.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1377

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 136/841 (16%), Positives = 289/841 (34%), Gaps = 104/841 (12%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLS----- 70
           I  L    ++ F   +   +  I+     +RQR +L           +E+ ++L      
Sbjct: 176 IGDLHVAPLSDFEGESDDYVCAILDRTESVRQRQALHAYGERLQRHEAELQERLKEMRGL 235

Query: 71  --------KYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI----PQTDTDLLSFEN- 117
                   ++ + + +     +     +  PE   Q     ++    P+T      FE+ 
Sbjct: 236 YDVLRETNRHEAPMEDVLQRVV-----ERLPEAW-QFPSLAEVRLTLPETGFRTAGFEHT 289

Query: 118 -WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYS 176
            W++    +                ++    +    + ++ R   +   + + ++    +
Sbjct: 290 DWMQTAPIMVDGVKVG---------EIQVVYREAPPLGLDDRTFLNEEQVLLEAVAFHIA 340

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
              E   + ++LS     ++VL +      +     G   + + + ++ +      F   
Sbjct: 341 VYFERQREARRLSESREQYQVLAEYSPDWEYWLGPDGRYRYVSPACRELSGHTADEFLAD 400

Query: 237 IGESRKLFKEEIKK-------RMISSSALEKNFCETVSTLEHGNNKSYK------IVRVL 283
                +L   E +          + S   +++  +       G     +      I    
Sbjct: 401 PDLIARLVHPEDRAHWMRHYTDALESCQADRDAIQMRLRARDGREHWVEHICNPVITADG 460

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
              G  G+  D+++   +  +LT     +     +I I D +  +++ N +F+       
Sbjct: 461 RYLGRRGVFRDITERKRIESELTKRSLAVEQSPESIVITDLDGRIEYVNDAFIANTGYTR 520

Query: 344 AF-LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           A  L  NP        +  + + P+ +  + W   +       E         NG+    
Sbjct: 521 AEALGQNP-------RILKSGRTPKAIFDELWACLLRGEVWHGELVN---RRKNGELYTE 570

Query: 403 IVTSNP---RGGTIWMF----ENLTVQVDLETKY------------------NTLVKVQG 437
           + + +P     G I  +     N+T Q  L  +                      ++   
Sbjct: 571 VASISPIRQSDGRITHYLAIKSNVTEQKRLAEELEQYRHHLEELVEARTLELRQQMRSLK 630

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             ID+L     +   +GR    N AF  +     + +   T         +  Y   D  
Sbjct: 631 ALIDNLPHMAWMKDREGRFVAVNRAFAEIKGRSPDEIIGLTDHDLWPGELAERYRADD-- 688

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAE 552
              A ++       + +         ++ E    P+ +       T+    ++      E
Sbjct: 689 ---AEVMAGRCQRTRVMPSVTNP--GAIYETFKAPIIDDTDEVLGTVGFARDIRPQREME 743

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L  + E    A   K++F+ ++S+E+R+P+  I+G   LL+   +   N  +   ++ 
Sbjct: 744 AELAHRAELAESAVRAKSAFLANMSHEIRTPMNAILGLAHLLRRDLIDPANINR---LDK 800

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +++  LL ++NDILDL+ ++AG ++L+        L+++V   I  +     + +KV 
Sbjct: 801 IESAARHLLAVINDILDLSKIEAGKLQLSDENFSAVMLVDQVSSLILDEARAKGLSLKVD 860

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGD---FIFSVKNNGS 728
            D +L     D  RL Q      SNA+ F+  G  T+ ++    + +     F V++ G 
Sbjct: 861 LDPELPWMRGDVTRLRQALLNYASNAVKFTHTGFVTIRVRLQERDAEGLTVRFEVEDTGI 920

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D    +F  F        RR  G GLGL+I      + GG     S     +T   
Sbjct: 921 GIPPDKQARLFQAFEQADTSTTRRYGGTGLGLAITAQLARMMGGEAGADSVAGRGSTFWF 980

Query: 787 R 787
            
Sbjct: 981 T 981


>gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
 gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
          Length = 545

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 192 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 238

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 239 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 295

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 296 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 351

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL +++  +  K
Sbjct: 352 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIRMVLDNK 410

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 411 AGEKEISLQVNA-LKGVSVIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 469

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 470 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 529

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 530 EGTTFTVVLPK 540



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 167 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 224

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 225 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 270

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 271 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 323


>gi|260170560|ref|ZP_05756972.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one component system') [Bacteroides sp. D2]
          Length = 808

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 122/636 (19%), Positives = 249/636 (39%), Gaps = 43/636 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ + +   ++L       + +        W  +   ++ +  + Y      E +    
Sbjct: 45  RDITQRSNVKRRLEQANLTLRAIQKVAQIGQWAYNTNKNV-FHYLGYTGVLCEESVQNL- 102

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLE--HGNNKSYKIVRVL------NS 285
           AI +  +L  EE ++  I       ++   E++S     +G     +I   L       S
Sbjct: 103 AIEKYVELIVEEDRQSFIEWCHVNEKELNMESISYRVRLNGEIFYMRIQTYLRKECSDGS 162

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           F   G   +++      + +      ++N   +I     +  + F NR F+    I  + 
Sbjct: 163 FNIEGYIQNITDIQHRRNDINTLTHAINNAKESIFAARPDGTIIFANRRFLHNHGIPES- 221

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---------N 396
                 +   L+       +P Q   + W E    V     ++    H            
Sbjct: 222 -----EDISQLKIYNVTADMPTQ---EAWDERCKDVIHGGSSNFVAHHPSKINKGILAYE 273

Query: 397 GQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPD 453
           G   +V  T++    + W F  +++ ++  E +   L ++   TI++L  G+ V     D
Sbjct: 274 GTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINND 331

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R    N    +     +N               +    + D     +     +  E K 
Sbjct: 332 FRYIYRNREAYN-RDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSGKGMHWTVEGKD 390

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G L +L    +      L +   +    +VT+    +R L    E    +D +K++F+
Sbjct: 391 RNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKAEMSDSLKSAFL 450

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL L+N+ILDL+ +
Sbjct: 451 ANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQLINEILDLSKI 507

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G ++ ++    L++L  EV  +   +  +  + +      +      D+ R+ Q+ S 
Sbjct: 508 ESGTIEFSFGPASLHNLCREVYDAHIFRTPQ-GVSLVYEPSDESLMIETDKNRVFQVISN 566

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA+ F+ +GS +       +   +F V + G+ I  +    VF RF    +  Q  G
Sbjct: 567 LIGNAVKFTKEGS-ISYGYKLVDNQIVFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--G 623

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 624 TGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 659


>gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 707

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 182/383 (47%), Gaps = 21/383 (5%)

Query: 416 FENLTVQVDL-ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             ++   + L E +       +   +D L E V +  P+  ++ +N A   L   +   +
Sbjct: 336 INDMLFSIRLAEQELRASEYEKKFILDSLEEIVVLRDPEFNVRWANQAA--LKNRDLLMI 393

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                  +I     +   E       A I T  D E  S +G   LL        + P+ 
Sbjct: 394 ENKEKALDIPVNDRKTPQELQLPG--APIWT--DHEFTSPEGKTWLL-------RLKPIC 442

Query: 535 NA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                    + T V +T+  + E  L    +    A+  K+ F+ ++S+ELR+PL +IIG
Sbjct: 443 GETGNIIAYLETGVEITERKKYEIELFRAKQDAEVANYAKSEFLANMSHELRTPLNSIIG 502

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+DLL     G LN++Q + V  IS S   LLNL+N+ILDL+ V+AG  +L+YST  L D
Sbjct: 503 FSDLLHDKVYGELNARQLKAVGNISGSGKHLLNLINEILDLSKVEAGGFELHYSTFWLAD 562

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +  EV+  +        I++++  +  L     DR+R+ Q+ S +++NA+ FS++ S V 
Sbjct: 563 VFAEVRDMLFPFAASKGIKLELEIEKDLPGIYGDRERITQVLSNLMTNAVKFSNENSCVR 622

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINL 767
           +KA+++N     SV + G  I  +    +F  F    ++   + +G GLGL++V+  + L
Sbjct: 623 VKASQNNNFIEVSVSDEGIGIAAEDHDKLFKPFSQIDSSSSRKYQGTGLGLALVKEIVQL 682

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           HGG V   S     +T    IP 
Sbjct: 683 HGGAVWFKSEVGKGSTFGFSIPL 705


>gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
 gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
          Length = 587

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 571

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 218 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 264

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 265 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 321

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 322 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 377

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 378 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 436

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 437 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 495

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 496 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 555

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 556 EGTTFTVVLPK 566



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 193 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 250

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 251 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 296

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 297 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 349


>gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1]
 gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1]
          Length = 587

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++   D  +   
Sbjct: 453 AGEKEISLQVNA-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
          Length = 1770

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 123/717 (17%), Positives = 264/717 (36%), Gaps = 67/717 (9%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL--SLDGIYS 176
            L   H     +     R    +       ++  A+K +G    +   L IL   +DG   
Sbjct: 565  LGSEHVRYRQQFLRDGRDRSMA-----NARHVRAVKADGNEFIAEIALSILPADVDGSRQ 619

Query: 177  ELAETTLKCKKL------SNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTET 228
              A      +KL       +    F+ L  ++   V+     +   + + + +    T  
Sbjct: 620  VAASIRDMTQKLAIEQKIRDSELRFRGLVANIPGAVYRTRIGEVWVMEYISDNIADITGY 679

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
                F +    +      E  + +      +    +    +E+        +R ++  G+
Sbjct: 680  AASQFIENRQRNFSSLILEEDRPLCHQHIDKALAQQETFEVEYRIRHRDGSIRWVHEKGK 739

Query: 289  AGIAI------------DVSKEITVNDQLTHTYEILHNLTVAIA--IFDQNRYLQFHNRS 334
            A                D+++   V+ +L  + + L N+T +I   ++     L++ + S
Sbjct: 740  ASYNEEGFPLWFDGSIDDITESKLVSVELEASRQQLTNITESIPCTVY----QLRWRSPS 795

Query: 335  FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
                  +  A L   P      + L +   +  +  +   +  +          K  W  
Sbjct: 796  DRAFTFLSGAAL---PMLGLQRDNLMNDFNIIAERIFDDERPEVVRALAGKSDDKLQWIR 852

Query: 395  ------PNGQTLHVIVTSN----PRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDH 442
                  PNG    +   ++         IW     ++T +  +E +            D 
Sbjct: 853  EFRYRHPNGSIRWMEAGASGHVESDDVIIWNGYVMDITQRKTMEQELALSEAHFRALFDG 912

Query: 443  LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             + G+      G I   N  F          L     I ++ +   R   ++   DL   
Sbjct: 913  ATIGIINIDAKGLILDCNDQFCEDIGRAREELRN-IPIFDVLSPQDREIAKAQFKDLADG 971

Query: 503  IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTE 557
             +  +  ER  ++ + E +    +  ++  L +        +++ V++T+       L  
Sbjct: 972  KVDHYRGERSFIRPSGEPM---WMTVNVSALFDCHHQFESAVVSMVDMTELKLLSDELLI 1028

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              E    A + K  F+ ++S+E+R+P+  IIG + L   +   +L+ KQ  YVE I  +S
Sbjct: 1029 AKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT---ALDKKQKNYVEKIERAS 1085

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL+++NDILD + ++AG + ++     L+ +L ++    + K+    + +       +
Sbjct: 1086 QSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNV 1145

Query: 678  G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPE 732
                  D  RL Q+   +++NA+ F+ +G  ++    ++   D+    FSV+++G  + +
Sbjct: 1146 PRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRDSGIGLTD 1205

Query: 733  DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +    +F  F        R   G GLGL+I +  + L GG++ + S     +T    
Sbjct: 1206 EQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFT 1262


>gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 587

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1263

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 135/775 (17%), Positives = 256/775 (33%), Gaps = 92/775 (11%)

Query: 80  NCLTIVWDGKDETP---------EIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA 130
             +  VW  +   P         +I+G     I  P        F + +       ++  
Sbjct: 20  PVVLFVWRPEPGWPVHYVSPNVEQILGYSPSEILAPGF-----RFSDLVHPDDMGAINDE 74

Query: 131 TEKLRKEGQS---FDLVAETQND----------CAIKIEGRVSGSCAFLRILSLDGIYSE 177
                  G++         T++                +G+            + G   +
Sbjct: 75  VATFLARGETTYEQHYRLRTRSGDYRWFHDYTVPEYDDQGKP---------RLISGYILD 125

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIVFQKA 236
             E     ++L    S F+ LF+         D   G  +  N    +        F + 
Sbjct: 126 RTEEHRAREQLKERESRFRTLFELYPDATVLIDPESGLPVQFNRLAHEQLGYTAEEFARL 185

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFC--ETVSTLEHGNNKSYKIVRVL----NSFGEAG 290
                +  +   +      +  E+     ET    + G+    ++  VL           
Sbjct: 186 RIPDYEALETPAETGAHIQAIFERGHDDFETRHRRKDGSLIDVRVSVVLLNLEGQTLFLA 245

Query: 291 IAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           +  D+++E   + +L  + E L     +  + I  +D        +     L+ I  A  
Sbjct: 246 VFRDITEEKAASRELERSRERLALATESAELGIWDYDMASGHLEWDDGMFRLYGIAPADF 305

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNG--QTLHVI 403
               S ++      +A   PE                     +       +G  +TLH  
Sbjct: 306 --GHSFEDW-----AAALTPESREAAVAAFQAAVSSDRPFDIRMVILRAADGAIRTLHGQ 358

Query: 404 VTSNPRG-----GTIWMFENLTVQVDLETKY-----NTLVKVQGETIDHLSE-------- 445
                 G       + +  ++T + +           +L       +D   +        
Sbjct: 359 AQIIRDGSGTPVRVVGVNRDVTEEEENRRHLAAFFAQSLSGFFFMMLDEPVDWQGADEEE 418

Query: 446 --GVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              +  +  D  RI + N A    +   E  L   T     A      +       LF  
Sbjct: 419 KEALLDYVMDHQRITMVNQAMLDQYGATERDLIGMTAREMFAHDLE--HGRFIWKGLFDQ 476

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                +   + L GT  ++    +                 +VT+  + + AL +     
Sbjct: 477 GRWHVETREQRLDGTPIIIDGDYICLYDEQGRVTGHFGVQHDVTERKQQQEALEQARREA 536

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A   K+ F+ ++S+E+R+P+  +IG + LL  ++   LN +Q   V  I  SS +LL 
Sbjct: 537 ERASRAKSEFLANMSHEIRTPMNAVIGLSQLLAQTE---LNEEQRDQVRKIHQSSRMLLG 593

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           ++NDILD + +++G ++L      LN+++ +V      K+H   + +       L  + V
Sbjct: 594 IINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGDKVHAGGLELLYDIPPHLPRTLV 653

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMC 735
            D  RL QI   +LSNA  F+ +G TV L        A D     F V++ G  + ++  
Sbjct: 654 GDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVANDQATLRFHVRDTGIGMSKEQL 713

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F  F        RR  G GLGL I    +   GG + + S+    +T +  +
Sbjct: 714 ARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGELEVESAPGKGSTFSFTL 768


>gi|283850587|ref|ZP_06367875.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574158|gb|EFC22130.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1093

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 117/655 (17%), Positives = 241/655 (36%), Gaps = 45/655 (6%)

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
           A LR      +  +  +       +      ++ L ++   ++   D  G +++ N   +
Sbjct: 302 AVLRRT----VRRQTGKLQELLAAVGQSEERYRELVENAGSVIVRLDLLGRVVFCNAFGQ 357

Query: 224 KNT-ETEGIVFQKAIGESRKLFKEEIKK------RMISSSALEKNFCETVSTLEHGNNKS 276
           +   +T+  +F + I        ++  +        ++ SA+     +      +G    
Sbjct: 358 RLFGQTQDQMFGRTIASLIDPPDDDEAESWDDILADVAGSAIGTRAFDRRHRTRNGEAAW 417

Query: 277 --YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNR 326
             + +  +    G+A     +  D+++   V + L  +              I  +D   
Sbjct: 418 LAWSLRALRAPSGQAAEILCVGADITERKQVEEALAASEARYALVTRGANDGIWDWDLVT 477

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
              + +  ++E+       +         L     A+ +  +       E    V +   
Sbjct: 478 DTVYFSPRYLEILGFSPDAMPPRAETWTKLIHPDDADIVLRENKRCADGEVDNFVVEYRM 537

Query: 387 THKDT---WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            HKD    W L  G +L        R        ++T +   E           +   + 
Sbjct: 538 RHKDGSYRWILGRGASLRDKYGRIVR--MAGTHTDVTRRKRDEEALRESQDQLAKIFRYS 595

Query: 444 SEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             G++V    DGRI   N     ++   +  +     I   +     +    D   L A 
Sbjct: 596 PVGISVTTRRDGRILDVNETGARMFGHNKADV-----IGRTSTEIGLWARPEDRGALMAE 650

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKN 559
           +  +     K L    +  S  V  YS +P+     +  +   V++T+    E+AL    
Sbjct: 651 MAAAGSVVAKELDLRHKNGSPVVTLYSAVPIQVYGESGILAVLVDITERKAMEQALRRSK 710

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA   A+  K+ F+  +S+E+R+P+  I+G   +L  S    L  K ++ +  I A+   
Sbjct: 711 EAAETANRAKSEFLSTMSHEIRTPMNTILGMAGVLAAS---DLPPKHTEALRAIEAAGGT 767

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDILDL+ ++AG + +      +  L  ++   +        + +++   G L +
Sbjct: 768 LLALLNDILDLSQIEAGGLIMEEKACDIVALAGKLTDMMRPDAARKGLALRLDVQGTLPA 827

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDM 734
                  R+ Q+   +L NA+ F+ +G  V+     D+ D       +V++ G  IP D 
Sbjct: 828 RLSCSPDRIRQVLVNLLGNAVKFTDQGEIVLELGREDHADTGAWLRLAVRDTGIGIPADK 887

Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              +F+RF     +      GVGLGL+I    +++ GG + + S+    +     
Sbjct: 888 QTVIFDRFTQVNASASRHYGGVGLGLAICNKLVHMMGGSIRVDSTPGQGSVFTVS 942


>gi|172038636|ref|YP_001805137.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700090|gb|ACB53071.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1082

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 125/697 (17%), Positives = 245/697 (35%), Gaps = 80/697 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSN---HISVFKVLFDSLDFLVWHRDQAGDILWANISY- 222
           R  +L                +S+      +   L D +  LV+ +D  G     N ++ 
Sbjct: 136 RGKALWDATGTPVRMAGSHTDISDRKNEQILLTSLIDCIPDLVFCKDSKGVYKMCNNAFE 195

Query: 223 ----KKNTETEGIVFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
               +   +  G    +       L F+E+ +  M+   +       T     +GN +  
Sbjct: 196 TFAGRDRKDIIGKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWITYP---NGNRRLV 252

Query: 278 KIVRVLNS------FGEAGIAIDVSKEITVNDQLTHTYE---ILHNLTVAIAIFDQNRYL 328
             ++           G  GI+ D++      + +    E   +L N+   +   D    +
Sbjct: 253 DTLKTPFCCPEGKLMGTIGISRDITDRKQKEEAIKQQAERDALLSNIARQLIDQDLTTAV 312

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLPEQLNWKT--------WKENI 378
            F   S  +  + D +++      ++    L        P  ++           W    
Sbjct: 313 NFILASLGKFTKCDRSYIIRYFPEEKAWSMLHEWCNEYTPSTIHDSQNISLEVFPWFSQQ 372

Query: 379 FSVYKS----------SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL-TVQVDLET 427
               KS           E   +     N  + +++V     GG    +  + T +     
Sbjct: 373 LIEGKSICINRLDDFPPEATAEQEAYQNSLSPNLLVVPMMTGGQTVGYLGIDTNRYKKWK 432

Query: 428 KYN-------------------------TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           K +                                  +D+ +E +        I L N A
Sbjct: 433 KEDVNLLKLVGELMAIAEARAIAEEAQKESQARFAGILDNANEAIISIDEQQNITLFNHA 492

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              ++      +        I +  +  + +        A        R+ + G  +  +
Sbjct: 493 AEEIFGYTSEEVLGRAFNLLIPSRFTDAHYQHIKTFQHTAETARQMGGRRPVFGQRKDGT 552

Query: 523 DSVLEYSIIPLP-NAQTMLT--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           + + E SI  +    +T+ T    ++T+  +AE AL +  E    A+  K+ F+  +S+E
Sbjct: 553 EFLAEVSISKIKLRGKTIFTAIIRDITERKQAEEALKQAKEQADAANRAKSEFLASMSHE 612

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  I+GFT +++     SL  +  Q ++ I  S   LL L+NDIL++  ++AG   
Sbjct: 613 LRTPLNAILGFTQVMQRDH--SLKGEHRQNLDIIGRSGEHLLELINDILEMTKIEAGRTT 670

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
            N +   L  LL+ ++  +  K  E N+++    +  L  ++  D  +L Q+   +L NA
Sbjct: 671 FNQTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKNPDLPQYIETDEGKLRQVLINLLGNA 730

Query: 699 MDFSSKGSTV-ILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQR 751
           + F+ +G  +  +K              F +++ G  I  +    +F  F      R   
Sbjct: 731 IKFTQEGGVILRIKTNHSTDQNPTIILTFEIEDTGPGIAAEEVNQLFEAFGQTETGRNSN 790

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL I   F+ L GG +++SS     +     I
Sbjct: 791 EGTGLGLPISRKFVELMGGEITVSSILGRGSLFTFTI 827



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 97/293 (33%), Gaps = 24/293 (8%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           + ++ + T+ +       ++      I  ++      F +  + E+       L  +   
Sbjct: 30  VALTMQETLRESEERWQLVVQGTNEGIWDWNLKTDEMFFSPRWKEMLGYGEQELPNHIDT 89

Query: 353 DELL----EFLRSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSN 407
            + L    +  R    L +    KT  ++  + ++   +     W L  G+ L    T  
Sbjct: 90  WKQLLHPQDRERVMKILGDHFARKT--DHYSAEFRLKCQDGNYKWILSRGKALW-DATGT 146

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           P         +++ + + +    +L       ID + + V      G  K+ N AF +  
Sbjct: 147 P-VRMAGSHTDISDRKNEQILLTSL-------IDCIPDLVFCKDSKGVYKMCNNAFETFA 198

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +   +   +         +  + E D + +        ++      G   L+      
Sbjct: 199 GRDRKDIIGKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWITYPNGNRRLVDTLKTP 258

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +         T+    ++TD  + E A+ ++ E        +++ + +++ +L
Sbjct: 259 FCCPEGKLMGTIGISRDITDRKQKEEAIKQQAE--------RDALLSNIARQL 303


>gi|312116341|ref|YP_004013937.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221470|gb|ADP72838.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 663

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 210/491 (42%), Gaps = 20/491 (4%)

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-PSNDELLEFLRSANKLPEQLNW 371
            ++  A+ + D+     + N  F  L  +    +A   PS+      +         L+ 
Sbjct: 17  DSMQDAVVVTDETGKFLWANAGFARLTGVPAHEIAARTPSSLLQSPGMNRNAVAAALLHA 76

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT----VQVDLET 427
              KE + +           W   + + + ++       G + +  ++T       D+  
Sbjct: 77  LEAKEPVKTQVLGERRGIPVWF--DLEVMPLLDADAHIRGFVAIQRDITFCVGRDCDVTK 134

Query: 428 KY---NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                +         ++ +S+G A++  + R+ ++N AF  L +  E+ L PG    ++ 
Sbjct: 135 AVLGSSKAEGRLRAAVEAISDGFAIYDENDRLLIANEAFTKLHEGIEDALGPGASFEDLL 194

Query: 485 A-TCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSDSVLEYSIIPLPNAQTMLTF 542
             T +R   +    D    +       + +     +   +   +      + N +T+  +
Sbjct: 195 RSTLARGLIDIGCEDPDRWLDRQLTASKHAFSEIHMRFANGCWMSRRHKRMENNETVRIW 254

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++   R +  L +       AD  K+ F+ ++S+E+R+P+  IIGF +LL     G+L
Sbjct: 255 TDISSLKRQQAELEDARARAEAADRAKSHFLTNMSHEMRTPMNGIIGFNELLLQ---GNL 311

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q  Y   I +SS  L++L+++ILDL  ++ G +++  +   LN L+    +S+    
Sbjct: 312 SDTQRDYATLIQSSSKSLMSLIDEILDLGKIERGTLEIQSAPFKLNQLI-SAARSLQALA 370

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            E  +++KV S     +  + D +R+ QI   +L NA+ F+  G  V L  + +N    F
Sbjct: 371 DEKALQLKVSSTLPSQTIAIGDVERIRQILVNLLGNAIKFTETGE-VTLSISAENNGLAF 429

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV + G  I  D  + +FNRF        G+ +G GLGL+I +    L GG +++ S   
Sbjct: 430 SVNDTGPGIAPDRLRKIFNRFYQADDLCSGKVKGSGLGLAIAKELTELMGGTITVESERG 489

Query: 780 GVTTINCRIPS 790
             +T    +P 
Sbjct: 490 EGSTFLVWLPL 500



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 80/254 (31%), Gaps = 27/254 (10%)

Query: 200 DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE 259
           DS+   V   D+ G  LWAN  + + T             S        +  + ++    
Sbjct: 17  DSMQDAVVVTDETGKFLWANAGFARLTGVPAHEIAARTPSSLLQSPGMNRNAVAAALLHA 76

Query: 260 KNFCETVSTLEHGNNK----SYKIVRVLNSFGEA------GIAIDVS-----------KE 298
               E V T   G  +     + +  +     +A       I  D++             
Sbjct: 77  LEAKEPVKTQVLGERRGIPVWFDLEVMPLLDADAHIRGFVAIQRDITFCVGRDCDVTKAV 136

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +  +         +  ++   AI+D+N  L   N +F +L E     L    S ++LL  
Sbjct: 137 LGSSKAEGRLRAAVEAISDGFAIYDENDRLLIANEAFTKLHEGIEDALGPGASFEDLLRS 196

Query: 359 LRSANKLP---EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             +   +    E  +    ++   S +  SE H       NG  +           T+ +
Sbjct: 197 TLARGLIDIGCEDPDRWLDRQLTASKHAFSEIH---MRFANGCWMSRRHKRMENNETVRI 253

Query: 416 FENLTVQVDLETKY 429
           + +++     + + 
Sbjct: 254 WTDISSLKRQQAEL 267


>gi|298530450|ref|ZP_07017852.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509824|gb|EFI33728.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1162

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/511 (18%), Positives = 194/511 (37%), Gaps = 41/511 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E  +++        L ++   I I   +  +  +N++  +   +    +      + +
Sbjct: 146 QAEEELSNSKALLEATLDSIPDIIGIQKPDHTMIRYNQAGYDFLGLTPEEVKGRKCYELI 205

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRGGTI 413
              +  ++             +  +V    +  K+ +     + L  I     + +G   
Sbjct: 206 GRSVPCSS-----------CTSARAVRTGRQGFKEKYLPEYDRYLECISQPVFDSQGSVH 254

Query: 414 WMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            + E   ++T +   E K  T          + S+ +  F  D +I   N  F  +    
Sbjct: 255 LVVEQLRDITQRKRSEKKLLTQKAQFESLFTNTSDAMVYFDADLKIFNVNTRFTEM---- 310

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                 G  +  +         + +G +           E+  ++ T         E  +
Sbjct: 311 -----FGHDLEEVRGRNIIDVVDPEGKETHYGAYRILAGEKVEMECTRYSRDGEPREVLL 365

Query: 531 IPLP------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              P             + +++     E+ +    +A  +A   K+ F+ ++S+E+R+PL
Sbjct: 366 KGGPVLVDGNITGGFAVYSDISQRKNYEKEIIRARDAAEEASRAKSDFLANMSHEIRTPL 425

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++    LL+ + LG    +Q +YV+  + SS  LLN++NDILD + ++AG ++L    
Sbjct: 426 NGVVSMMSLLEETSLG---PEQREYVDMATISSESLLNIINDILDFSRIEAGRLELTRQN 482

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
             L   ++ V   +  +     + + V  D +       D  RL QI   ++ NA+ F+ 
Sbjct: 483 FDLEREISRVMLLLTKRARSKEVELLVDYDLQAPRRVRGDNLRLRQILYNLVGNAVKFTE 542

Query: 704 KGST-VILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           KG   V +  A    +      SV++ G  IP  M + +F  F    +   RR  G GLG
Sbjct: 543 KGYILVQVSLAEAGEEKARLKISVQDTGVGIPVHMQEKIFEHFTQVDYSSTRRHGGTGLG 602

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I  S + L GG + + S +   +T    +
Sbjct: 603 LAISRSLVRLMGGDLQVMSREGEGSTFFFEL 633



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 98/281 (34%), Gaps = 32/281 (11%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E+ +     ++LSN  ++ +   DS+  ++  +     ++  N +     +  G+  ++ 
Sbjct: 140 EVEKRRQAEEELSNSKALLEATLDSIPDIIGIQKPDHTMIRYNQA---GYDFLGLTPEEV 196

Query: 237 IGE-SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN-NKSYKIVR--VLNSFGEAGIA 292
            G    +L    +     +S+   +   +          ++  + +   V +S G   + 
Sbjct: 197 KGRKCYELIGRSVPCSSCTSARAVRTGRQGFKEKYLPEYDRYLECISQPVFDSQGSVHLV 256

Query: 293 I----DVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           +    D+++      +L        +L    + A+  FD +  +   N  F E++  DL 
Sbjct: 257 VEQLRDITQRKRSEKKLLTQKAQFESLFTNTSDAMVYFDADLKIFNVNTRFTEMFGHDLE 316

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +        +++ +    K      ++        +       + T +  +G+   V++
Sbjct: 317 EVRGR----NIIDVVDPEGKETHYGAYRILAGEKVEM-------ECTRYSRDGEPREVLL 365

Query: 405 TSNP---RG---GTIWMFENLTVQVDLETKYNTLVKVQGET 439
              P    G   G   ++ +++ + + E +         E 
Sbjct: 366 KGGPVLVDGNITGGFAVYSDISQRKNYEKEIIRARDAAEEA 406


>gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1666

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 122/651 (18%), Positives = 244/651 (37%), Gaps = 60/651 (9%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            L     +  E T + +++   +S    +FD+    +     +G I  AN +     E  G
Sbjct: 552  LLATQRQAGELTAQQERIQALLSEQDAIFDNAPMGI-MYTASGRIQRANPA---MAELLG 607

Query: 231  IVFQKAIG-ESRKLFKEEIKKR----MISSSALEKNFCETVSTLEHGNNKSYK------- 278
               +   G E+ +LF      R    +++              L  G+ + +        
Sbjct: 608  YTVESMKGLEASRLFATADSYREFGGLVAPKLGAGEGIHQEWDLIRGDGQLFSAMISAKG 667

Query: 279  IVRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRS 334
            +           I  D+++   +  ++         IL N    ++I  ++ +  F N+ 
Sbjct: 668  VRLEGLERASIWIVEDITERKRLEREMRESGERLRRILENSPAGVSINTEDGHSLFSNQR 727

Query: 335  FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS---ETHKDT 391
              E+       L+   + +   +               T ++   +  +       ++  
Sbjct: 728  MAEMLATTPEELSHRSATEFWFD--------------PTDRQEFIATLRRDGYVRDYQSR 773

Query: 392  WHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            +   +G  + V++ S           +    ++T +   E         Q    +  + G
Sbjct: 774  FVRADGTPITVLLASALTEFADGRYLVSWAYDITERQKAEDAVRFAGAEQQAIFEAATVG 833

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            +A F  +  I   NP    L+  E   L  G   R        + +  D ++  +     
Sbjct: 834  IA-FLKNRVIVRGNPQLDRLFGYEPGELV-GQSTRIWFPDDESFADVGDAYEALSRGEVH 891

Query: 507  FDDE---RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
              ++   RK        +S S ++ S +   +   +    +VTD+  A  AL +  +   
Sbjct: 892  QREQCYVRKDGTRFWCRISGSAIDPSDL---SRGAVWMLEDVTDARAAAEALAKARDVAE 948

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             A + K+ F+ ++S+E+R+P+  IIG + L   ++   LN +Q  YV+ I  S   LL +
Sbjct: 949  DAAKTKSDFLANMSHEIRTPMNAIIGMSHLALKTE---LNPRQRDYVKKIQQSGQHLLGI 1005

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVA 682
            +NDILD + ++AG +++  + + L+ +L  V   I+ K     + +      G     + 
Sbjct: 1006 INDILDFSKIEAGKLEVEVTEVHLDKVLENVGNLISDKASAKGLELLFDLGAGVPLDLMG 1065

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG---DFIFSVKNNGSSIPEDMCKSV 738
            D  RL Q+     +NA+ F+ +G  V+ ++   D G      F V++ G  + E+    +
Sbjct: 1066 DSLRLGQVLINYANNAVKFTEEGEIVVAVRLLEDLGAEVMLRFEVRDTGIGLTEEQKARL 1125

Query: 739  FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            F  F        R   G GLGL+I +    L GG V + S     +T    
Sbjct: 1126 FQSFQQADTSTTRKFGGTGLGLAISKKLAELMGGEVGVDSVPGEGSTFWFT 1176


>gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
 gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
          Length = 587

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++   D  +   
Sbjct: 453 AGEKEISLQVNA-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|163792969|ref|ZP_02186945.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159181615|gb|EDP66127.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 757

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 124/630 (19%), Positives = 245/630 (38%), Gaps = 50/630 (7%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK--LFKEE 247
              +    +        +  D    ++W N ++     T G+++  AIG      L+ ++
Sbjct: 141 AENARLAEVVRHSANPTYVMDLEFRLVWMNSAFLD---TFGVLWTDAIGRRPSDVLYGDQ 197

Query: 248 IKKRMISS-----SALEKNFCETVSTLEHGNNKSYKI------VRVLNSFGEAGIAIDVS 296
            +  +++      +A      E ++    G  + + +             G   I  D++
Sbjct: 198 GEPALVAEVRSALTATGHYRGEIMNRDRLGQERVFALQLDRFRSVDGQHEGYVAIREDIT 257

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +       L  +     +LT   + +    D N      + ++    ++D   +     +
Sbjct: 258 ERKRAERALAESEARFRDLTETASDWFWETDANHRFLSLSGAWPRPQDMDRDLIGAKRWD 317

Query: 353 DELLEFLRSANKLPEQLNWKTWKENI--FSVYKSSETHKDTWHLPNGQTLHVIVTSNPR- 409
               + L            + W++++     ++S    +   H      +HV ++  P  
Sbjct: 318 FAAGDMLS-----------QPWRQHLDDLQNHRSFRDFRYVLHRSGDALVHVSISGRPVF 366

Query: 410 ------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                  G      ++T +V      + LV+     +D + + VA+F  D R+  +N  +
Sbjct: 367 SPEGRFVGYRGTGRDITEEVSARETVDRLVR----ALDSIEDVVALFDADERLVFANRPY 422

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R+L    +  L PG  +  I    + +       +    +       R     T      
Sbjct: 423 RALHPQFDGILIPGKKLGEI---LNDFALRGIIDNPETEVPKRLHQFRNPSGPTDINRFG 479

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                    L +  T+L   +VT S  AE  L +  +   +A+  K+ F+  +S+ELR+P
Sbjct: 480 RWFRVKDQKLGDGGTLLIATDVTHSKDAELELRKAVDTAEEANAAKSGFLARMSHELRTP 539

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G ++ L   +     +K+ +Y+  +  +  ILL+ ++DIL+ A +DA    +   
Sbjct: 540 LNAILGLSETLMLMEDRLSPAKRREYLGDVMQAGRILLSHIDDILNFARLDADGFAVTPQ 599

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
                  + EV + +       ++R++      L S +AD + + QI   +LSNA+ FS 
Sbjct: 600 PTDPRRSVAEVVRLMRVVARSRSVRLEAALARNLPSVLADPRSIRQILINLLSNAVKFSP 659

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSI 760
           K   V L   +D     FSV ++G  IP D    +F  F    +        G GLGLSI
Sbjct: 660 KHGVVQLMVIQDGSRLRFSVSDHGIGIPADQIDQIFEPFHQVGNPSLAVPDSGTGLGLSI 719

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
           V+S ++ + G V++ S+    TTI+   P 
Sbjct: 720 VKSLVDRNAGAVAVDSTPGRGTTISVWFPL 749


>gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
 gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
          Length = 587

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVTT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
 gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
          Length = 558

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 164/373 (43%), Gaps = 28/373 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++ ++           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYISLVNRSYKEIF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYEAFLHAEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L     G+
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GA 361

Query: 602 LNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           + ++Q    ++  I   S  +  L+ D+LDL+ ++    KLN  T+ + +LL E+K  + 
Sbjct: 362 MENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLE 421

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  +  I ++V    +  S + D  RL QIF  +++NA+ ++  G TV ++   D  + 
Sbjct: 422 NKSQDKEISLQVDV-LRHVSVIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLEDEHNA 480

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I ++    +F RF            G GLGLSIV+  +  H G V++ S 
Sbjct: 481 YIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESE 540

Query: 778 DEGVTTINCRIPS 790
               TT    +P 
Sbjct: 541 VGEGTTFTVALPK 553



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E++ +         +++E L+ L       E        E +  ++ +    
Sbjct: 238 SLVNRSYKEIFHV---------TDEEYLDRLYY-----EAFLHAEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 589

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 100/387 (25%), Positives = 167/387 (43%), Gaps = 24/387 (6%)

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAF 463
           T +  G    +  ++  +++ + +  +  K + +TI   + EG+ V   +G I L NPAF
Sbjct: 221 TRDEVGELARVMNDMAARIEQQLERTSAEKNRLDTILRGMGEGLMVTDANGLITLVNPAF 280

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L+   E+    G HI  IA             D F AI+ S D+  + +  TL +  +
Sbjct: 281 LGLFSLNESV--EGRHIIEIAR-------HPVLNDAFKAIVASGDERVEKM--TLTMGEE 329

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             +    +PL +   +   V          A+      L + + I+  FV +VS+ELR+P
Sbjct: 330 KHVLTHWVPLVDNGELQGVV----------AVFHDITDLTRLENIRRDFVANVSHELRTP 379

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T I G+ + L    + +   +  ++V  I + S  L  L+ D+L L+ ++AG M L  +
Sbjct: 380 VTVIKGYAEALIDGAMETDPERARKFVGIILSHSERLAALIGDLLTLSQLEAGSMNLEKT 439

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           T+    +     + +  K     I I         S +AD  RL Q+   +L NA+ ++ 
Sbjct: 440 TVRPEQVAKRAMELLQPKAARKGITIDCSGLSGAQSVLADPGRLEQVLVNLLDNAIKYTP 499

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
           +G  +   AA         VK+ G  IP      +F RF        R   G GLGLSIV
Sbjct: 500 EGGAISFSAAVKENMVRIGVKDTGVGIPPKDLPRIFERFYRVDTARSRDEGGTGLGLSIV 559

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  + LHGG V + S     +     I
Sbjct: 560 KHIVQLHGGAVGVESEPGKGSEFWFTI 586



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 32/175 (18%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +    + +      IL  +   + + D N  +   N +F+ L+ ++ +           
Sbjct: 241 QQLERTSAEKNRLDTILRGMGEGLMVTDANGLITLVNPAFLGLFSLNES----------- 289

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----- 410
                    + E        +   ++  S +   +   L  G+  HV+    P       
Sbjct: 290 ----VEGRHIIEIARHPVLNDAFKAIVASGDERVEKMTLTMGEEKHVLTHWVPLVDNGEL 345

Query: 411 -GTIWMFENLTVQVDLE-----------TKYNTLVKVQGETIDHLSEGVAVFGPD 453
            G + +F ++T    LE            +  T V V     + L +G     P+
Sbjct: 346 QGVVAVFHDITDLTRLENIRRDFVANVSHELRTPVTVIKGYAEALIDGAMETDPE 400


>gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
 gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
          Length = 587

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHPEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KLN  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++   D  +   
Sbjct: 453 AGEKEISLQVNA-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEIG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHPEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
 gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
          Length = 561

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 164/373 (43%), Gaps = 28/373 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++ ++           H+ 
Sbjct: 208 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYISLVNRSYKEIF-----------HVT 254

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 255 DEEYLDRLYYEAFLHAEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 311

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L     G+
Sbjct: 312 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GA 364

Query: 602 LNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           + ++Q    ++  I   S  +  L+ D+LDL+ ++    KLN  T+ + +LL E+K  + 
Sbjct: 365 MENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIKMVLE 424

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  +  I ++V    +  S + D  RL QIF  +++NA+ ++  G TV ++   D  + 
Sbjct: 425 NKSQDKEISLQVDV-LRHVSVIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLEDEHNA 483

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I ++    +F RF            G GLGLSIV+  +  H G V++ S 
Sbjct: 484 YIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTVTVESE 543

Query: 778 DEGVTTINCRIPS 790
               TT    +P 
Sbjct: 544 VGEGTTFTVALPK 556



 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 183 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 240

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E++ +         +++E L+ L       E        E +  ++ +    
Sbjct: 241 SLVNRSYKEIFHV---------TDEEYLDRLYY-----EAFLHAEIIELVEEIFMTEVKV 286

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 287 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 339


>gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1078

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/573 (20%), Positives = 221/573 (38%), Gaps = 46/573 (8%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITV 301
           EE   R+   S+LE     +         +S+  +    S    G+  ++++    E  +
Sbjct: 377 EEAAGRLAGDSSLEMIGETSRFVEVQSLTRSFNRMARQLSQTMQGMKRELTERQWAEAAL 436

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            +  +    ++      I +      +   N    +L  +    +     +    +    
Sbjct: 437 GESESRYRALVELAVDGILLGSHEGVITGANECMCDLTGLTREDMLGMHISALPFK---- 492

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRGGTIWMFENL 419
               PE L  + ++          +  +     P+G  + V + S   P G    +F ++
Sbjct: 493 ----PESLEREPFRFEQLEHGDIVQKER-VLIRPDGTEILVEMRSKMMPDGTYQSIFRDV 547

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAV---FGPDGRIKLSNPAFRSLWKTEENRLSP 476
           T +   E       +      D+L  G+      G DGR       F  +    E+    
Sbjct: 548 TARRKAEAALRESEERLRMLSDNLPGGLVYQIEVGLDGR----ERRFTYISGGVES--LH 601

Query: 477 GTHIRNIAATCSRYY---NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-- 531
           G  ++++    S  Y    E DG  L      +              L+   + +S +  
Sbjct: 602 GLSVQDVLDDASVLYAQLPEKDGEQLAEREAEALSAMSLFHAEARFRLASGKVRWSYLAS 661

Query: 532 -PLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            P      ++     +++T+  + E AL E  E    A+ +K  F+ ++S+E+R+PL  I
Sbjct: 662 APRRIGDRVVWDGVEIDITELKKTEAALLEAKETAETANRVKTEFLANMSHEIRTPLNGI 721

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LL+ +   SL  +Q +YVE    S+  L  L+ DILD++ ++AG M L  +    
Sbjct: 722 LGMMQLLRQT---SLEPEQEKYVELSITSAARLTRLLADILDISRIEAGKMSLFNAPFSA 778

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            +L++ V +  A    E  +R++  I  G     V D  R+ QI   ++ NA+ ++ +G 
Sbjct: 779 AELVDSVVELFAVPAREKGLRLRCAIHPGLPPLLVGDEARVRQILFNLVGNALKYTEQGD 838

Query: 707 TVILKAARDNGDF------IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
            + L+    + D          V + G  IP  M   VF  F     +H     G GLGL
Sbjct: 839 -ITLELFARDADLCRSECMCIRVVDTGVGIPAHMLSGVFEPFRQVEGSHTRSYEGAGLGL 897

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +IV+  + L  G +S+ S     T +   +P +
Sbjct: 898 AIVQRLVELMQGEISVQSEPGAGTAVLVSLPLR 930



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 115/353 (32%), Gaps = 46/353 (13%)

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS--LDGIYSELAETTLK 184
           L +A  +L   G S  L    +    ++++          R LS  + G+  EL E    
Sbjct: 376 LEEAAGRL--AGDS-SLEMIGETSRFVEVQSLTRSFNRMARQLSQTMQGMKRELTERQWA 432

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG---ESR 241
              L    S ++ L +     +      G I  AN   +   +  G+  +  +G    + 
Sbjct: 433 EAALGESESRYRALVELAVDGILLGSHEGVITGAN---ECMCDLTGLTREDMLGMHISAL 489

Query: 242 KLFKEEIKKRMISSSALEKN---FCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSK 297
               E +++       LE       E V     G     ++  +++       I  DV+ 
Sbjct: 490 PFKPESLEREPFRFEQLEHGDIVQKERVLIRPDGTEILVEMRSKMMPDGTYQSIFRDVTA 549

Query: 298 EITVNDQLTHTYEIL----HNLTVAIA------IFDQNRYLQFHNRSFVELWEIDLAFLA 347
                  L  + E L     NL   +       +  + R   + +     L  + +    
Sbjct: 550 RRKAEAALRESEERLRMLSDNLPGGLVYQIEVGLDGRERRFTYISGGVESLHGLSVQ--- 606

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTS 406
                D L +      +LPE+   +  +    ++   S  H +  + L +G+     + S
Sbjct: 607 -----DVLDDASVLYAQLPEKDGEQLAEREAEALSAMSLFHAEARFRLASGKVRWSYLAS 661

Query: 407 NPR---GGTIW--MFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
            PR      +W  +  ++T     E           T  +V+ E + ++S  +
Sbjct: 662 APRRIGDRVVWDGVEIDITELKKTEAALLEAKETAETANRVKTEFLANMSHEI 714


>gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055]
 gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger
           B]
 gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum]
 gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           Australia 94]
 gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI]
 gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 587

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|312886589|ref|ZP_07746197.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311300992|gb|EFQ78053.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 1025

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 196/476 (41%), Gaps = 30/476 (6%)

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            F +     ++ ++   +   P  +E        +++    + + +   I    K   T 
Sbjct: 410 NFWSAEAFRIFGLEP--VGAGPDTEEF-------DRMIHPDDREKYINAIKQALKGGLTS 460

Query: 389 KDTWH--LPNGQTLHVIVTSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGET 439
                  L  G+  ++     P    +G    ++    ++T     E             
Sbjct: 461 NFDLRIILKTGELKYIQAIGKPFYNDQGVATRLYGAIIDITKYKKAEEAILMKQAQLNTF 520

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I+     +AVF  + R   ++  ++  +K E   +    H  ++    S ++ +     +
Sbjct: 521 IEVSPAPIAVFDKEMRYIAASDLWKQDYKLERKNIIGVCHY-DLFPEASLHWRQIHERGM 579

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              I+++ +D      G  +     +  +          ++    +TD   AE+AL +  
Sbjct: 580 AGEILSNTEDSFVRKNGRTQWFRWEIRPWFETDKEIGGIIMFTEIITDRKLAEQALIQAK 639

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A   K  F+  +S+E+R+P+  +IGFT LL  +        Q +Y++ +  S   
Sbjct: 640 EQAENAASAKTQFLSTMSHEIRTPMNAVIGFTHLLLQNP----REDQVEYLKILKFSGEN 695

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LL L+NDILD + ++AG ++  +    L DL+  ++ ++  +  E  I++K++ D  L  
Sbjct: 696 LLVLINDILDFSKIEAGKLEFEHVDFNLKDLVRNIRAAMQQRAIEKGIQLKLLVDEDLPQ 755

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDM 734
           + + D  RL QI S ++SNA+ F+S G  V+    +    +     F VK+ G  IP + 
Sbjct: 756 AVIGDPVRLGQILSNLISNALKFTSVGKVVVSASLVSRNNEYTIVSFEVKDTGIGIPTEK 815

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +++F  F         +  G GLGL+I +  + + G  + + S     +T +  +
Sbjct: 816 QQAIFESFTQASSDTTRKYGGTGLGLTITKRLLEMQGSAIQLDSEPGKGSTFSFNL 871


>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1346

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 123/262 (46%), Gaps = 9/262 (3%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            AQ       + D  R +  L   NE L +A  +K+ F+ ++S+E+R+P+  ++G T+LL 
Sbjct: 783  AQKRQLEATLEDLRRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLL 842

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                  L  +Q + VE I  S   LL ++NDILD + ++AG ++L      L + + +V 
Sbjct: 843  EM---DLTKEQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDVI 899

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LK 711
               A +     + +    + +      D  RL Q+ S ++ NA+ F+ +G  V+     +
Sbjct: 900  TLFAPRAAAKQLELICFIEERALEVQGDPHRLRQVLSNLIGNAIKFTERGEVVVEAELER 959

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                   +  SV++ G  IP D    +F  F        RR  G GLGL+I +  + + G
Sbjct: 960  LDERRAHWRISVRDTGIGIPPDRLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEMMG 1019

Query: 770  GHVSISSSDEGVTTINCRIPSK 791
            G + + S     +T   RIP +
Sbjct: 1020 GTIGVESEVGKGSTFTVRIPFR 1041


>gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
 gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
          Length = 558

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 205 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 251

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 252 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 308

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 309 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 364

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 365 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 423

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 424 TGEKEISLQVNA-LKGVSVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDKYNAYI 482

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 483 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 542

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 543 EGTTFTVVLPK 553



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 180 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 237

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 238 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 283

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 284 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 336


>gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1566

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 134/799 (16%), Positives = 278/799 (34%), Gaps = 74/799 (9%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV---WDGKDETPEIIGQL-H 100
            I QR  +   ++++ +   ++ D + +   +      +  +   W      P+       
Sbjct: 639  ITQRKQIEAALSQSETQFRQLADAMPQIVWITNAAGKVEYLNQQWFDYTALPQNENSYNP 698

Query: 101  QRIDIPQTDTDLLSF-ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRV 159
            ++I       DL +  E+W          ++  +LR   +  D         A+ I+G  
Sbjct: 699  EQIRSAIHPDDLSTIVESWKTAFTNQTPYQSEFRLR---RGRDGSYRWFLGRAVVIKGPQ 755

Query: 160  SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
                A+       G  +++ +       +    S+   L  S    +   DQ    L+ N
Sbjct: 756  GEIIAWY------GTSTDIDDYKQAELCIRKKESLLNALIASSPIGISFFDQDLCYLYVN 809

Query: 220  ISYKKNTETE-GIVFQKAIGESRKLFKEEIKKRMISSSALEKNF--CETVSTLEHGNNKS 276
             +              +++ E   L   E +  +      ++     E +  +  GN + 
Sbjct: 810  QALATINGVPLNEHLGRSLEEVLPLMAAEFRPLLTQILQTQQPLLNHEFMGEIIPGNFRH 869

Query: 277  -----YKIVRVLNSFGEAGIAI-DVSKEITVNDQLTHTYEI-------LHNL----TVAI 319
                 + +          G+ + D+++   V   L  +          L  L     V +
Sbjct: 870  CLANHFPVCLPDGEVLGIGVTVMDITQLKQVEAALRASEATATERAQELETLMEITPVGL 929

Query: 320  AI-FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
             I  D + +    N++  +L +     +AT    D          +  +++        +
Sbjct: 930  WIAHDPDCHSMSANQTAYQLMQAKPGDIATATPPDGTYPLNFKQRRNGKEITPDDLPMQV 989

Query: 379  FSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNT 431
             +      T +  +   +G    +   + P         G I  F ++T +   E     
Sbjct: 990  AARSGQEITDEIEFVFEDGTVRFIYGRAIPLTNESGQIRGVIGAFVDITERKQAEEALRQ 1049

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-----HIRNIAAT 486
              +      + + + V +    G  +  N            +L         H  +I  T
Sbjct: 1050 SEQRYRYLAEAIPQLVWITNSQGYNEYVNQQMCEYTGLTFEQLLQFDWREIIHPEDIEQT 1109

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--- 543
              ++    +    +       +   ++ QG  +           IPL N Q  +      
Sbjct: 1110 YQKWMAAVEQDGYYE-----MEYRLRNAQGKYQWYLGR-----AIPLKNEQGKIVKWFGT 1159

Query: 544  ----NVTDSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                +    + A+R           E   +A+ IK+ F+  +S+ELRSPL  I+G+  LL
Sbjct: 1160 STNIDAQKQLEAQRESLLSLERAAREQAEEANRIKDEFLAVLSHELRSPLNPILGWAKLL 1219

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            +T    +      + +  I  ++ +   L+ D+LD++ +  G + L    + L  ++   
Sbjct: 1220 QTQNFNA--ETYQKGLSTIERNAALQAQLIEDLLDISRIMRGKLNLKIVPVNLIFIIESA 1277

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +++        I I+   D  +G  + D  RL QI   +LSNA+ F+  G  V +K   
Sbjct: 1278 LETVRLAAEAKTINIQKDLDLTVGKVLGDTARLQQIVWNLLSNAVKFTPTGGQVNVKLEG 1337

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
               + + +V + G  I  +    VF+ F     +  R   G+GLGL+IV   + LHGG V
Sbjct: 1338 SGNEAVITVSDTGQGISANFLPYVFDYFRQADSKTTRKFGGLGLGLAIVRHLVELHGGTV 1397

Query: 773  SISSS-DEGVTTINCRIPS 790
            + +S  +    T + ++P 
Sbjct: 1398 TANSPGENQGATFSVKLPL 1416



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/435 (14%), Positives = 137/435 (31%), Gaps = 53/435 (12%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE------ 229
             ++ +       LS   + F+ L D++  +VW  + AG + + N  +   T         
Sbjct: 637  RDITQRKQIEAALSQSETQFRQLADAMPQIVWITNAAGKVEYLNQQWFDYTALPQNENSY 696

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFG 287
                 ++      L       +   ++         +     G+ + +  + V +    G
Sbjct: 697  NPEQIRSAIHPDDLSTIVESWKTAFTNQTPYQSEFRLRRGRDGSYRWFLGRAVVIKGPQG 756

Query: 288  EA----GIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELW 339
            E     G + D+         +     +L+ L     + I+ FDQ+    + N++   + 
Sbjct: 757  EIIAWYGTSTDIDDYKQAELCIRKKESLLNALIASSPIGISFFDQDLCYLYVNQALATIN 816

Query: 340  EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK---------ENIFSVYKSSETHKD 390
             + L       S +E+L  + +  +       +T +         E I   ++    +  
Sbjct: 817  GVPLNEHLGR-SLEEVLPLMAAEFRPLLTQILQTQQPLLNHEFMGEIIPGNFRHCLANHF 875

Query: 391  TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE-------TIDHL 443
               LP+G+ L          G      ++T    +E           E        ++  
Sbjct: 876  PVCLPDGEVL----------GIGVTVMDITQLKQVEAALRASEATATERAQELETLMEIT 925

Query: 444  SEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC---SRYYNESDGWDL 499
              G+ +   PD     +N     L + +   ++  T             R   E    DL
Sbjct: 926  PVGLWIAHDPDCHSMSANQTAYQLMQAKPGDIATATPPDGTYPLNFKQRRNGKEITPDDL 985

Query: 500  FAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAER 553
               +      E    ++   E  +   +    IPL N        +  FV++T+  +AE 
Sbjct: 986  PMQVAARSGQEITDEIEFVFEDGTVRFIYGRAIPLTNESGQIRGVIGAFVDITERKQAEE 1045

Query: 554  ALTEKNEALRKADEI 568
            AL +  +  R   E 
Sbjct: 1046 ALRQSEQRYRYLAEA 1060



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/384 (12%), Positives = 125/384 (32%), Gaps = 47/384 (12%)

Query: 143 LVAETQNDCAIKIEGRVSGS-----------CAFLRI---LSLDGIYSELAETTLKCK-K 187
           ++   +     ++EG  +G+               R+   L +  I  E A    + + +
Sbjct: 472 ILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHLKMAQIREENAHREQQLRIE 531

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGES-RKLFK 245
                     + +++    +  D      + N   ++  + T       +I E   +L  
Sbjct: 532 AEEARKEVINILETITDGFFSLDHQWRFTYVNQETERLCQKTREEFLGHSIWEVYPELIN 591

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
            E  +++  +++ + +      +L        ++    +  G A    D+++   +   L
Sbjct: 592 SEFDQQLRRAASQKISVHFESPSLYA--RLWREVHIYPHQNGLAVYWRDITQRKQIEAAL 649

Query: 306 THTYEILHNLTVA----IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
           + +      L  A    + I +    +++ N+ + +   +     + NP      E +RS
Sbjct: 650 SQSETQFRQLADAMPQIVWITNAAGKVEYLNQQWFDYTALPQNENSYNP------EQIRS 703

Query: 362 ANKLPEQLNW--KTWKENIFSVYKSSETHKDTWHLPNGQ-------TLHVIVTSNPRGGT 412
           A   P+ L+   ++WK      + +   ++  + L  G+           +V   P+G  
Sbjct: 704 A-IHPDDLSTIVESWKT----AFTNQTPYQSEFRLRRGRDGSYRWFLGRAVVIKGPQGEI 758

Query: 413 IWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           I  +    ++      E        +    I     G++ F  D      N A  ++   
Sbjct: 759 IAWYGTSTDIDDYKQAELCIRKKESLLNALIASSPIGISFFDQDLCYLYVNQALATINGV 818

Query: 470 EENRLSPGTHIRNIAATCSRYYNE 493
             N    G  +  +    +  +  
Sbjct: 819 PLNE-HLGRSLEEVLPLMAAEFRP 841



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 73/258 (28%), Gaps = 14/258 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
            I   +       IL  +T      D      + N+    L +        +   +   E
Sbjct: 529 RIEAEEARKEVINILETITDGFFSLDHQWRFTYVNQETERLCQKTREEFLGHSIWEVYPE 588

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            + S     +Q   +   + I   ++S   +   W         V +  +  G  ++   
Sbjct: 589 LINSE---FDQQLRRAASQKISVHFESPSLYARLWR-------EVHIYPHQNGLAVYW-R 637

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +  +E   +       +  D + + V +    G+++  N  +       +N  S  
Sbjct: 638 DITQRKQIEAALSQSETQFRQLADAMPQIVWITNAAGKVEYLNQQWFDYTALPQNENSYN 697

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSDSVLEYSIIPLP 534
                 A          + W       T +  E   R+   G+        +        
Sbjct: 698 PEQIRSAIHPDDLSTIVESWKTAFTNQTPYQSEFRLRRGRDGSYRWFLGRAVVIKGPQGE 757

Query: 535 NAQTMLTFVNVTDSVRAE 552
                 T  ++ D  +AE
Sbjct: 758 IIAWYGTSTDIDDYKQAE 775


>gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
 gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
          Length = 587

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSVGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396]
          Length = 1437

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/678 (18%), Positives = 251/678 (37%), Gaps = 85/678 (12%)

Query: 181  TTLKCKKLSNHISV-FKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGIVFQ 234
              ++ ++L +        + +S    V   D  G +   N   ++       E  G   Q
Sbjct: 349  LNMRQRQLVSSGQARMAAIVESAQDAVLGMDLDGVVTDWNRGAERMFGYPRDEAIGRFVQ 408

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-------- 286
            K I    ++ +E    RMI      + F          + ++ ++   ++          
Sbjct: 409  KLIVPGERVAEETSILRMIEDGGPVRPFNTQRKCK---DGRTVEVSVSVSPIRNADGEIV 465

Query: 287  GEAGIAIDVSKEITVNDQ----------------------LTHTYEILHNLTVAIAIFDQ 324
            G A    D+S++I++ +Q                      L     IL+N   AI   D 
Sbjct: 466  GAAKTIRDISRQISIENQIRELNASLERQVEARTAEIRRYLALQQAILNNAGNAIIATDL 525

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS-----ANKLPEQLNWKTWKENIF 379
               +   N +   +       +    +       LR      A +  E+L  +       
Sbjct: 526  EGLITLFNPAAERMLGYTADEMVGKRTPAVF--HLREEVAARAQEFSEELGERLAPGFEV 583

Query: 380  SVYKSSE----THKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETK 428
             + K+       H+ T+   +G    V ++       +N   G + +  +++ QV     
Sbjct: 584  FIVKTKRGLPNEHEWTYVRKDGARFPVQLSVTELKDENNRASGYLGVATDISRQVQDRRN 643

Query: 429  YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW---------KTEENRLSPGTH 479
              ++     +  +    G+  +         N     ++                    H
Sbjct: 644  LMSMRDQLLKAAEVAELGIWTWDLVSDTLTWNRQMFEIYQVPYELNNAGLSHRHWRNALH 703

Query: 480  IRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + AAT ++      G  ++  I  I     E + +Q        +V+E++ +  P   
Sbjct: 704  PEDEAATTAKLEAALAGEGVYDPIYRIVRPSGEVRYVQAA------AVVEFNDLGKPIL- 756

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    ++T+    E+ L E       A + K+ F+ ++S+E+R+P+  I+G  +LLK +
Sbjct: 757  VLGVNRDITEQREYEQRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLKRT 816

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               +L  +Q  YV    +S+  LL ++NDILD + ++AG + L+     L+ LL +V   
Sbjct: 817  ---NLEERQQDYVHKAESSARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVI 873

Query: 658  IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
            I   + +  + +    D K+  ++  D  RL QI   +  NA+ F+ +G   + ++   +
Sbjct: 874  ITANLGDKPLEVLFDIDPKIPDWLELDGLRLQQILINLAGNAVKFTEQGEVEITVRLKSE 933

Query: 716  NGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              D     FSV++ G  I  +  + +F  F        RR  G GLGL+I    + L GG
Sbjct: 934  EEDRLVLSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGG 993

Query: 771  HVSISSSDEGVTTINCRI 788
             ++  S +   +     I
Sbjct: 994  EIAAESEEGEGSVFRFSI 1011


>gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 597

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/416 (22%), Positives = 175/416 (42%), Gaps = 27/416 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  +               T   I+T +  GG    F  +  ++       N   + 
Sbjct: 200 RITAPLRKMRQAAFEVARGKFDTKVPILTDDEIGGLAMAFNQMGRRLQFNINALNQEKEQ 259

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  DG I ++NP      +        G      A T +       
Sbjct: 260 LASILSSMADGVITFNRDGEILITNPPAERFLQAWYFEQGNG------AETMAPL--PPQ 311

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +LF  ++   +++ +S++ +L+  +  +L   + PL +  T+   V V   +  ER L
Sbjct: 312 VKELFIRVVR--EEKEQSIELSLQGRTWVIL---MTPLYSKTTVRGAVAVLRDMTEERRL 366

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+++  FV +VS+ELR+P+  + G+++ +    + + + ++ +  + I  
Sbjct: 367 ----------DKLRKDFVANVSHELRTPIAMLQGYSEAIIDD-IAATDEEKKEMAKVIYD 415

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  LVND+LDLA ++AG + L+Y T+ L   +  + +       E  I +      
Sbjct: 416 ESLRIGRLVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQIDLSAEFKN 475

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  R+ Q+ + ++ NA+  + K   V +   R        V+++GS IPE+  
Sbjct: 476 EDIQITMDPDRIEQVLTNLIDNAIRHTDKNGMVKIIVERSGDGVTIHVQDSGSGIPEEDL 535

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             VF RF        R   G GLGL+I ++ +  H G +S+ S     TT    +P
Sbjct: 536 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFYLP 591



 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 30/169 (17%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +N +      IL ++   +  F+++  +   N            FL       E     
Sbjct: 252 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAER-------FLQA--WYFEQGNGA 302

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWM 415
            +   LP Q+     KE    V +  +       L  G+T  +++T         G + +
Sbjct: 303 ETMAPLPPQV-----KELFIRVVREEKEQSIELSLQ-GRTWVILMTPLYSKTTVRGAVAV 356

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPD 453
             ++T +  L+            +  T + +     + + + +A    +
Sbjct: 357 LRDMTEERRLDKLRKDFVANVSHELRTPIAMLQGYSEAIIDDIAATDEE 405


>gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
 gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
          Length = 587

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    KL+  T+ +  LL ++   +  K
Sbjct: 394 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V +  K  S + D  RL QIF  +++NA+ ++  G  V ++ A D  +   
Sbjct: 453 AGEKEISLQVNT-LKRVSVIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDKYNAYI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDSEVG 571

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 572 EGTTFTVVLPK 582



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 313 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|29346593|ref|NP_810096.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338489|gb|AAO76290.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1336

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 208/513 (40%), Gaps = 29/513 (5%)

Query: 290  GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            G   +++      + +      ++N   +I    ++  L F NR F+    I  +     
Sbjct: 656  GYIQNITDIQRRRNDINTLTHAINNAKESIFAAKEDGTLIFANRQFLHNHGIPESEEIGK 715

Query: 350  PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI------ 403
                  L+    A  +  Q +W    ++I        +     H P+  + +++      
Sbjct: 716  ------LKIYEIAGDMNTQEDWHERCKDIL----HGGSRSFVAHHPSKVSKNILAYEGIM 765

Query: 404  --VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKL 458
              VT++    + W F  +++ ++  E +   L  +   TID+L  G+ V     D R   
Sbjct: 766  YNVTNDSGEESYWSFSHDISERLHYEAQIKRLNLIMDTTIDNLPAGIVVKEINNDFRYIY 825

Query: 459  SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
             N                           +    E D           +  E K   G  
Sbjct: 826  RNRE-SYNRNLCIGESIGKNDFDYYPPEVAEKKREEDTLVATTGRGLHWTTEGKDKNGNE 884

Query: 519  ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             +L    +      L +   +    ++T+  + +R L    E    +D++K++F+ ++S+
Sbjct: 885  IILDKRKIRVDGDELSSPIIVSIEWDITELEKIKRELQTSKEKAEMSDKLKSAFLANMSH 944

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            E+R+PL  I+GF+ L+  S+      ++  + E + A++  LL L+N+ILDL+ +++GI+
Sbjct: 945  EIRTPLNAIVGFSHLIAESEN---KEERKTFYEIVEANNERLLQLINEILDLSKIESGII 1001

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            +   + I +N L  EV  +   +  +  +++             D+ R+ Q+FS ++ NA
Sbjct: 1002 EFTSAPININSLCKEVHDAHVFRTPQ-GVQLIYEPSENGLVIETDKNRVFQVFSNLIGNA 1060

Query: 699  MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
              F+  GS +           +F V + G+ I  +    VF RF    +  Q  G GLGL
Sbjct: 1061 FKFTKAGS-ISYGYKLVGNQIVFHVTDTGTGIEPEKIGRVFERFAKLNNYAQ--GTGLGL 1117

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            SI ++ +   GG +S+SS     TT    +P +
Sbjct: 1118 SICKTIVERLGGEISVSSVVGQGTTFTFTLPYE 1150



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 48/431 (11%), Positives = 127/431 (29%), Gaps = 52/431 (12%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           I QR+++ +++ +    L EI         +    + +             +G      +
Sbjct: 536 ITQRSNVKRQLEQVNRNLREIQKVAQIGQWMYNTRDNVF----------HYMGYTGVLCE 585

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA 164
                  L  ++ ++     +  +    K            E  N+ +I    RV+G   
Sbjct: 586 ESSRSISLEKYQEFIVEEDRLSFTSWCRK----------NEEGLNEESISYRVRVAGEIY 635

Query: 165 FLRILSLDGIYSELAETT----------LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           ++R+ +   +  EL   +             ++  N I+      ++    ++   + G 
Sbjct: 636 YMRLQAY--LRDELPNGSCNIEGYIQNITDIQRRRNDINTLTHAINNAKESIFAAKEDGT 693

Query: 215 ILWANISYKKN---TETEGIVFQKAIGESRKLFKEEIKKRMISS--SALEKNFCETVSTL 269
           +++AN  +  N    E+E I   K    +  +  +E              ++F     + 
Sbjct: 694 LIFANRQFLHNHGIPESEEIGKLKIYEIAGDMNTQEDWHERCKDILHGGSRSFVAHHPSK 753

Query: 270 EHG-----NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIA 320
                       Y +            + D+S+ +    Q+          + NL   I 
Sbjct: 754 VSKNILAYEGIMYNVTNDSGEESYWSFSHDISERLHYEAQIKRLNLIMDTTIDNLPAGIV 813

Query: 321 I--FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           +   + +    + NR       + +         D     +    +  + L   T +   
Sbjct: 814 VKEINNDFRYIYRNRESYN-RNLCIGESIGKNDFDYYPPEVAEKKREEDTLVATTGRGLH 872

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           ++     +   +   + + + + V          + +  ++T    ++ +  T  +   E
Sbjct: 873 WTTEGKDKNGNEI--ILDKRKIRVDGDELSSPIIVSIEWDITELEKIKRELQTSKEK-AE 929

Query: 439 TIDHLSEGVAV 449
             D L      
Sbjct: 930 MSDKLKSAFLA 940


>gi|325292361|ref|YP_004278225.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325060214|gb|ADY63905.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 775

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 108/497 (21%), Positives = 203/497 (40%), Gaps = 55/497 (11%)

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKL--PEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            W   L  +   P     L F  +A  +   +   ++  +       +  +      H  
Sbjct: 279 FWSGSLYEILGRPPKAAPLSFSDAARMMHSEDGNLYELARAVGCGDLRQIDQIFRMRH-A 337

Query: 396 NGQTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            G  + +     ++ +N     I +  ++T Q  L  +Y    +   + I+  SE   ++
Sbjct: 338 KGHYVWLRARAQVIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLW 397

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             + R+ + N  ++  +   ++ L  GT    + A  +R         +    +   D  
Sbjct: 398 DKNDRLVMCNTHYQKAYGLPDSVLVAGTEKSAVQAAAAR--------PVVERRVADPDQS 449

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE------------- 557
             S    ++L  D  L+ +     +   +    ++T   R +  L +             
Sbjct: 450 GLSRMTEVQLADDRWLQINERRTRDGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLS 509

Query: 558 ----------------------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                                 + E  + A+  K+ F+ ++S+ELR+PL  I+GF+D+L+
Sbjct: 510 ASQHKLERQKTELSDANANYLAEKERAQAANLAKSEFLANMSHELRTPLNAILGFSDILQ 569

Query: 596 TSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               G + + K S+Y   I  S   LLN++NDILD++ ++AG M++N  TI L  L+ E 
Sbjct: 570 NEMFGPVGSPKYSEYARDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEET 629

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +  A +  + NI ++      L +   DR+ + QI   +LSNA+ F+  G  V L+   
Sbjct: 630 LRLTAIQAEQKNITVQQKVCAGL-TMQGDRRAMKQIMLNLLSNAVKFTGNGGRVALRTHV 688

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                I ++ + G  IP +    +   F  V + +   + G GLGL+I  S + LHGG +
Sbjct: 689 HQAAMILTIADTGIGIPAEALDKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVRLHGGTM 748

Query: 773 SISSSDEGVTTINCRIP 789
            I S +   T +   IP
Sbjct: 749 KIRSCEGRGTVVTIIIP 765



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 63/171 (36%), Gaps = 14/171 (8%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNR 333
           +++R  N     GIA+DV+++  +  +         + + + + A  ++D+N  L   N 
Sbjct: 349 QVIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMCNT 408

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            + + + +  + L        +     +A  + E          +    +S  +      
Sbjct: 409 HYQKAYGLPDSVLVAGTEKSAV--QAAAARPVVE--------RRVADPDQSGLSRMTEVQ 458

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           L + + L +       GG + +  ++T+    + +     +    TI  LS
Sbjct: 459 LADDRWLQINERRTRDGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLS 509



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 97/297 (32%), Gaps = 16/297 (5%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           +  + +F  I+ +LL  +    + +++         E+   +     +          + 
Sbjct: 216 AMNVTLFAGISSILLVVLYAYYMQVKRARDADDIFAESNLRVETALSRGRCGLWDFDLST 275

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH--YIKLSKATE--KLRK 136
                W G     EI+G+  +   +  +D         +        +L++A     LR+
Sbjct: 276 RRMF-WSG--SLYEILGRPPKAAPLSFSDAA-----RMMHSEDGNLYELARAVGCGDLRQ 327

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
             Q F +     +   ++   +V  +    R++ +    +E      +  +    ++   
Sbjct: 328 IDQIFRMRHAKGHYVWLRARAQVIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAI 387

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
                  F++W  D+   ++  N  Y+K       V      +S               +
Sbjct: 388 ESTSEA-FVLW--DKNDRLVMCNTHYQKAYGLPDSVLVAGTEKSAVQAAAARPVVERRVA 444

Query: 257 ALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
             +++    ++ ++  +++  +I  R     G   +  D++      ++L  +   L
Sbjct: 445 DPDQSGLSRMTEVQLADDRWLQINERRTRDGGLVSVGTDITLLKRHQERLRDSERRL 501


>gi|296283542|ref|ZP_06861540.1| multi-sensor hybrid histidine kinase [Citromicrobium bathyomarinum
            JL354]
          Length = 1446

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 113/657 (17%), Positives = 242/657 (36%), Gaps = 62/657 (9%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTET 228
            +     E       L      F  L       ++  D  G   + N ++ K      +  
Sbjct: 530  VKQRTRELEETVAALEESERRFGDLAGLSPAGIFRTDAYGFCTYVNEAWLKQTGLGASHA 589

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-- 286
             G  +  A+     L  +  ++ + +  A  +  C+              ++        
Sbjct: 590  LGAGWLDAVHP--DLRDDVKREWLDAVQAGTEWRCKLQFLKPDDVVSWVDLIAAPRIGDD 647

Query: 287  ----GEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVEL 338
                G  G+AID++++    D L  +     +L       I   D      + N ++ ++
Sbjct: 648  GEMQGFIGVAIDITEQKLATDALKESERRFQSLASFSPAGIFRTDSAGVCNYVNPAWCQM 707

Query: 339  WEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLP 395
              + +   + T  S     +            +     +   +     E +  +  W   
Sbjct: 708  AGLTEAEAMGTGWSRAVHYD------------DLDGLLQRWAAAVDRGEPYRGEFRWLHL 755

Query: 396  NGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +G  + V   + P         G I +  ++T +   E +     K      ++ ++ V 
Sbjct: 756  DGSIVWVDAVAQPEFDDDGNVRGYIGVVIDVTDRKRFEKEIAERDKQLAILAENATDAVF 815

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                DG    ++P+ + +       L     +           ++   W LF  + +   
Sbjct: 816  RVELDGTCLYASPSAKDVLGVPSEHLIGTNALDGFHPD-----DQDRMWSLFDDLRSGRI 870

Query: 509  DERKSLQGTLELLSD--SVLEYSIIPLPNAQ------TMLTFVNVTDSVRAERALTEKNE 560
             +  +         D    LE +   + + Q        ++  ++ D  + E  L    +
Sbjct: 871  KQIVAAYRWRSTKDDDYRWLEANAGLVKDQQSDEAKEVSVSIRDIGDRKKMELDLVAARQ 930

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                A   K +F+ ++S+E+R+P+  ++GFT+LL     G L+ +Q +  + I+ S   +
Sbjct: 931  NAETAAAAKATFLANMSHEIRTPMNGVVGFTELLL---AGELSPEQRENAQLIADSGRAM 987

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
            + ++NDILD++ +DAG M +    I L   L    + +     +  ++ +++ D  + S 
Sbjct: 988  MQILNDILDVSKIDAGQMTIVREPIDLRHKLQSCMRLLEPTARQKGLKFELLIDEDVPSR 1047

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD-FIFSVKNNGSSIPEDMC 735
             +AD  RL QI + ++ NA+ F++KG     V ++   ++ +    +V+++G  IP D  
Sbjct: 1048 VMADPLRLRQILTNLVGNAIKFTAKGIVNCRVSIERGPEDQETLCIAVEDSGIGIPADRL 1107

Query: 736  KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             ++F  F        R   G GLGL+I      +  G + +SS     +    R+P 
Sbjct: 1108 DAIFREFSQADESTARIYGGTGLGLTISNELAKMMDGELLVSSELGHGSVFTLRLPL 1164


>gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
 gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
          Length = 2213

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 198/525 (37%), Gaps = 43/525 (8%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA--------FLATN 349
            E  V ++      I+ N    I + +    +Q  + +   ++    +         L   
Sbjct: 1188 EERVKERTMRLRSIIENAADGIIVMNSRGIVQNFSPAAETIFGFCASEVVGNNIKMLMPE 1247

Query: 350  PSNDELLEFLRSA---------NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
            P+  E   +L+            K  E +  +   E         E   D  HL  G   
Sbjct: 1248 PTRKEHDGYLKHYIDDVKTKVVGKTREVVGLRKNGETFDMDLAVGEFFIDGEHLFTGMVR 1307

Query: 401  HVIVTSNPRGGTIWMFENLT----VQVDLETKYNTLVKVQGETIDHLSEGVAVFG--PDG 454
             +              E+L      +  LE K    V      +++L   V       D 
Sbjct: 1308 DITERKRMDKELRLSKEDLEKTLYEKTSLEEKLKQNVAYMTTLLENLPIAVFAKDVKNDY 1367

Query: 455  RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            R  L N     ++  +  ++         +   + ++  +D   +    I    +E  + 
Sbjct: 1368 RFTLWNHVAVEIFGFKSGQIIGRNDYDLFSTEEANHFRRTDEEIVKHLGIKDIQEETITT 1427

Query: 515  QGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIK 569
                    + +L    + +PN        +    ++TD  +AE  L         A   K
Sbjct: 1428 SH-----GERILHTVKVAVPNESGESNILLGITQDITDRKQAEEELMRAKRVAENATRAK 1482

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            + F+ ++S+E+R+P+  IIG + L   +    L+ KQ  Y+  I ++S  LL L+NDILD
Sbjct: 1483 SDFLANMSHEIRTPMNAIIGMSHLALQT---GLDRKQRDYINKIQSASESLLALINDILD 1539

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLL 688
             + V+AG M++      LND L+++ Q I  K  E  + + + +   +    + D  RL 
Sbjct: 1540 FSKVEAGKMEIERKPFNLNDTLDKLAQLITVKTREKKLELLIDTHKDVPCGLIGDSLRLG 1599

Query: 689  QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            QI   + +NA+ F+ KG  V+    +    +     F+VK+ G  + ++    +F  F  
Sbjct: 1600 QILINLTNNAVKFTEKGEVVVSIEKVCVDDEQVTLKFTVKDTGIGMTKEQMGKLFQSFSQ 1659

Query: 745  NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  R   G GLGL+I +    L GG +S+ S+    ++    
Sbjct: 1660 ADASTTRKYGGTGLGLTISKKLTELMGGAISVESTFGKGSSFVFT 1704



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 16/174 (9%)

Query: 274  NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFH 331
             +  K +R+     E  +    S E  +   + +   +L NL +A+   D   +      
Sbjct: 1313 KRMDKELRLSKEDLEKTLYEKTSLEEKLKQNVAYMTTLLENLPIAVFAKDVKNDYRFTLW 1372

Query: 332  NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
            N   VE++      +      D             E  +++   E I       +  ++T
Sbjct: 1373 NHVAVEIFGFKSGQIIGRNDYDLF--------STEEANHFRRTDEEIVKHLGIKDIQEET 1424

Query: 392  WHLPNG-QTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGET 439
                +G + LH +  + P         + + +++T +   E +     +V    
Sbjct: 1425 ITTSHGERILHTVKVAVPNESGESNILLGITQDITDRKQAEEELMRAKRVAENA 1478



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 65/166 (39%), Gaps = 5/166 (3%)

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G     F   + + +LE +           I++ ++G+ V    G ++  +PA  +++  
Sbjct: 1173 GQRATTFMRRSNE-ELEERVKERTMRLRSIIENAADGIIVMNSRGIVQNFSPAAETIFGF 1231

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              + +  G +I+ +    +R  ++         + T    + + + G  +      ++ +
Sbjct: 1232 CASEV-VGNNIKMLMPEPTRKEHDGYLKHYIDDVKTKVVGKTREVVGLRKNGETFDMDLA 1290

Query: 530  IIPLP-NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSF 572
            +     + + + T +  ++T+  R ++ L    E L K    K S 
Sbjct: 1291 VGEFFIDGEHLFTGMVRDITERKRMDKELRLSKEDLEKTLYEKTSL 1336


>gi|254472050|ref|ZP_05085451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp.
           JE062]
 gi|211959252|gb|EEA94451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp.
           JE062]
          Length = 744

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 106/532 (19%), Positives = 220/532 (41%), Gaps = 62/532 (11%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           +     L+     +  +D +R   F + S  E+  +D       P ND +      +   
Sbjct: 211 SRIDAALNRGRCGLFDWDLSRGRVFWSASLYEMLGMD-------PRNDIMGFAEIQSLTH 263

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-------NPRGGTIWMFEN 418
           P+ ++     +++    KS+   +      +G  + + V +             I +  +
Sbjct: 264 PDDVDLYDLAKSLLDTGKSNVDRQWRMRHIDGSWVWLRVRAEVQTDAGTNEPHLIGICMD 323

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T Q  L  +  T      + I+++SE   ++  D  + + N  +R L +  ++ +  GT
Sbjct: 324 VTEQKMLAEQSRTADLRLRDAIENISEAFVLWDADNHLVMCNSNYRKLHQLPDHVVQAGT 383

Query: 479 HIRNIAATCSR-YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               + ++ S+   +E +  D   + + S           +E+     L+ S     +  
Sbjct: 384 PYATVMSSASQPIISEPEEGDHIDSDMES--------SYKVEMEGGRWLQVSERRTKDGG 435

Query: 538 TMLTFVNVTDSVRAERAL-----------------------------------TEKNEAL 562
            +    ++T+  R E  L                                    ++    
Sbjct: 436 FVSVGTDITELKRKEEKLLESERGHMATIADLRQSRQKLELQAQQLVELTEKYADEKTRA 495

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621
             A++ K+ F+ ++S+ELR+PL  IIGF++++     G L + K  +Y + I +S   LL
Sbjct: 496 EDANQAKSEFLANISHELRTPLNAIIGFSEIMDQGMFGDLGSDKYKEYCKDIHSSGNYLL 555

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N++NDILD++ ++AG ++L+   + +  ++ +  + I+    E NI++ V  +       
Sbjct: 556 NVINDILDMSKIEAGRIELSVEDVQIQQIVQDAARIISATAAEKNIKV-VNENLPHMHLQ 614

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR+ + QI   +L+N++ F+ +   V + A +        + +NG  I +     +   
Sbjct: 615 ADRRAVKQILLNLLANSVKFTPENGEVRVSARKVGAFAELKITDNGIGIAKKDIDRLAKP 674

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           FV   +      +G GLGL+I  S   LHGG++ I S     T +  ++P K
Sbjct: 675 FVQVENQFTKTHKGSGLGLAIARSLSELHGGYMEIDSEVGKGTEVTIKLPLK 726



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 13/167 (7%)

Query: 283 LNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
            N     GI +DV+++  + +Q         + + N++ A  ++D + +L   N ++ +L
Sbjct: 312 TNEPHLIGICMDVTEQKMLAEQSRTADLRLRDAIENISEAFVLWDADNHLVMCNSNYRKL 371

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            ++    +        ++    S   + E         ++ S YK          +  G+
Sbjct: 372 HQLPDHVVQAGTPYATVMSSA-SQPIISEPEEGDHIDSDMESSYK--------VEMEGGR 422

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            L V       GG + +  ++T     E K     +    TI  L +
Sbjct: 423 WLQVSERRTKDGGFVSVGTDITELKRKEEKLLESERGHMATIADLRQ 469



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 42/341 (12%), Positives = 109/341 (31%), Gaps = 28/341 (8%)

Query: 15  EICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHS 74
               +FS   A       + + T + ++++I    + A +  +     +    ++    +
Sbjct: 159 PEDAIFSSWRAELSANVTIFVATSMVLLVIIYAYFAQATRAQQADGIYAATRSRID---A 215

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
            L    C    WD           L++ + +     D++ F       H   +      L
Sbjct: 216 ALNRGRCGLFDWDLSRGRVFWSASLYEMLGMD-PRNDIMGFAEIQSLTHPDDVD-----L 269

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS------------LDGIYSELAETT 182
               +S     ++  D   +    + GS  +LR+ +            L GI  ++ E  
Sbjct: 270 YDLAKSLLDTGKSNVDRQWR-MRHIDGSWVWLRVRAEVQTDAGTNEPHLIGICMDVTEQK 328

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           +  ++        +   +++       D    ++  N +Y+K  +    V Q     +  
Sbjct: 329 MLAEQSRTADLRLRDAIENISEAFVLWDADNHLVMCNSNYRKLHQLPDHVVQAGTPYATV 388

Query: 243 L--FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEI 299
           +    + I         ++ +   +      G  +  ++  R     G   +  D+++  
Sbjct: 389 MSSASQPIISEPEEGDHIDSDMESSYKVEMEG-GRWLQVSERRTKDGGFVSVGTDITELK 447

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
              ++L  +     ++     +    + L+   +  VEL E
Sbjct: 448 RKEEKLLESER--GHMATIADLRQSRQKLELQAQQLVELTE 486


>gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis
            NIES-39]
          Length = 1778

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 159/371 (42%), Gaps = 20/371 (5%)

Query: 431  TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +  Q  +I+   +G+ +   D   +  N A   ++   E     G   R I       
Sbjct: 1265 QEIAKQLASIEAAGDGIGIV-QDDLYQYVNHAHLVMFGYSEPEDLVGHSWRKI------- 1316

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNAQTMLTFVNVTD 547
            Y+ ++       +      +R      +    D      E S+    +   +    +++D
Sbjct: 1317 YSPTEIQRFENEVFPILMRDRYWTGEAIATRQDGTSFAEELSLTLTEDKLLICVCRDISD 1376

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                E  L + N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ ++    G+L  +Q 
Sbjct: 1377 RRETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGDRQK 1436

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Q ++ I  S++ LL L+NDILDLA ++AG MKL+ +   +  L       I  +  +  I
Sbjct: 1437 QALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGI 1496

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDNGDFI 720
             I V     L     D +RL Q+   +L+NA+ F+     + L+          D     
Sbjct: 1497 SINVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVR 1556

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            F+V + G  I E+    +F  F         Q  G GLGLS+V+  + +HGG V++ S  
Sbjct: 1557 FAVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKV 1616

Query: 779  EGVTTINCRIP 789
               +     IP
Sbjct: 1617 GSGSQFIFEIP 1627



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 189/561 (33%), Gaps = 108/561 (19%)

Query: 162  SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
            + A  + ++ D +  EL E       L      +  L D +   V+  D+ GD ++ N  
Sbjct: 503  AIAIQQAIAYDELQKELQERQKIQTYLQETEERYATLTDLIPVGVFRTDKEGDCIYVNEE 562

Query: 222  YKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            Y + T     ET G+ +Q ++        + I +    + A    F E    LE G N+ 
Sbjct: 563  YCQMTGRIPGETIGLSWQISVHPED---SDRINEAWKQTQANHHPFKEE-YRLEAGENQL 618

Query: 277  YKIVRVLNSF-------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR--- 326
            +   +++  F       G  G   D+S++     +       L +L  ++    + R   
Sbjct: 619  WVFGQIVPEFSVEETVNGYVGTITDISEQKAALCEREKAETALQDLNQSLEATVKQRTQE 678

Query: 327  ------YLQFH-NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE----------QL 369
                   LQ     + + +W+ D++       +     +  S  + P+            
Sbjct: 679  LSHLSDRLQLAIKSAQMGIWDWDISQNHLTWDDQMYKIYGVSPLECPQTVELWKNSLHPE 738

Query: 370  NWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVT----SNPRG---GTIWMFENLT 420
            + +  +  +    +        +    P+G  + +        NP G     I    ++T
Sbjct: 739  DAELTQAILQESLRGEREFNPEFRIVRPDGSIVFIKANALIIRNPEGEPQRMIGTNVDIT 798

Query: 421  VQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
                 E+    L++   +    IDH S  VAV    G I  +N  F  +    +  L   
Sbjct: 799  ESKQAESDRQQLLRELSDLKLAIDH-SAIVAVTDASGVITYANNRFCEISGYSQEELIGK 857

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPL 533
            TH        S Y+  S   +L+  I +      K   G +   S +      E +I+P 
Sbjct: 858  TH----RIINSGYHPHSFFTNLWRTISSG-----KVWHGEICNRSKNGFIYWTESTIVPF 908

Query: 534  PN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL-----RSP 583
             N     +Q +    ++T   +AE  L +                   S+E+     ++P
Sbjct: 909  LNSQKKVSQYLAIRFDITARKQAEARLLDY------------------SHEIEDLYNKAP 950

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS--STILLNLVNDILDLATVDAGIM--- 638
                 G+  L    +   +N  + Q++ Y         L     D L     ++G +   
Sbjct: 951  ----CGYHSLDAEGRYVKINDTELQWLGYSREQLLGRRLA----DFLT---PESGEIFES 999

Query: 639  --KLNYSTIVLNDLLNEVKQS 657
              +L      L DLL E+  S
Sbjct: 1000 NFELFKQQGYLKDLLLEMISS 1020


>gi|222148029|ref|YP_002548986.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735017|gb|ACM35980.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 790

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 124/516 (24%), Positives = 217/516 (42%), Gaps = 50/516 (9%)

Query: 323 DQNRYLQFH-NRSFVELWEIDLA-----------FLATNPSNDELLEFLRSANKL-PEQL 369
           D NR ++   +R    LW+ DLA            +   P ++E L F  +A  + P+  
Sbjct: 254 DSNRRVETALSRGRCGLWDFDLASRKLVWSRSMFDILGLPPSNEPLGFADAARLMHPDDG 313

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLH------VIVTSNPRGGTIWMFENLTVQV 423
           N       I                 NG  +       VI TS+     I +  ++T Q 
Sbjct: 314 NLYALARTIGRDGDRHIDQVFRMRHANGHYVWLRARAQVIRTSSGSPHVIGIAMDVTEQH 373

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI--- 480
            L  +Y    +   + I+  SE   ++  + R+ + N  F+ ++   ++ L PG      
Sbjct: 374 RLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNAHFQHVYGLPDSVLVPGVERAVV 433

Query: 481 ----------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                     R IA   ++  + +    L        ++ R    G + + +D  L    
Sbjct: 434 DAAAARPIIQRRIADPSAKGSSRTTELQLADERWLQINERRTRDGGLVSVGTDITLLKRH 493

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE--------------IKNSFVQHV 576
                 Q       + D   +++ L  +   L +A+E               K+ F+ ++
Sbjct: 494 QERLREQERRLMATIGDLSSSQKKLERQKAELSEANEKYLAEKQRAEAANKAKSEFLANM 553

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           S+ELR+PL  I+GF+++L T   G + + K  +Y   I  S   LLN++NDILD++ ++A
Sbjct: 554 SHELRTPLNAILGFSEILSTGMFGPIGSPKYGEYARDIHDSGKHLLNVINDILDMSKIEA 613

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G M L    +    L++E  +       + NI I+      L +  ADR+ L QI   IL
Sbjct: 614 GHMLLKCENVDFASLIDETLRLTTISAKDKNIAIEQRIASGL-AMTADRRALKQILLNIL 672

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRG 753
           SNA+ F+++G  + ++A + +G     V + G  IP+     +   F  V + +   + G
Sbjct: 673 SNAVKFTNEGGRISVRAHKIDGAVRLLVSDTGIGIPKQAISKIGQPFEQVQSQYAKSKGG 732

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I  S I LHGG + I S +   T ++  +P
Sbjct: 733 SGLGLAISRSLIMLHGGSLRIRSREGKGTVVSINVP 768



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 75/248 (30%), Gaps = 35/248 (14%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           + +K   +  +     +  S +        R++        +    +    G+    ++ 
Sbjct: 276 ASRKLVWSRSMFDILGLPPSNEPLGFADAARLMHPD-DGNLYALARTIGRDGDRHIDQVF 334

Query: 281 RVLNSFGE--------------------AGIAIDVSKEITVNDQLTHTYEILHNL----T 316
           R+ ++ G                      GIA+DV+++  +  +     + L +     +
Sbjct: 335 RMRHANGHYVWLRARAQVIRTSSGSPHVIGIAMDVTEQHRLAQRYAEADQRLADAIECTS 394

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            A  ++D+N  L   N  F  ++ +  + L                  +         + 
Sbjct: 395 EAFVLWDKNDRLVMCNAHFQHVYGLPDSVLVPGV----------ERAVVDAAAARPIIQR 444

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
            I        +      L + + L +       GG + +  ++T+    + +     +  
Sbjct: 445 RIADPSAKGSSRTTELQLADERWLQINERRTRDGGLVSVGTDITLLKRHQERLREQERRL 504

Query: 437 GETIDHLS 444
             TI  LS
Sbjct: 505 MATIGDLS 512


>gi|189468086|ref|ZP_03016871.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
 gi|189436350|gb|EDV05335.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
          Length = 928

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 127/659 (19%), Positives = 257/659 (38%), Gaps = 52/659 (7%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +      L   +     +    L+  +      L    D+ G+       Y
Sbjct: 288 WFSSLADIINICISLRLARDEADRERNFLSNLYKHMPMGYVRLSILCDEEGE------PY 341

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---- 278
                          G   + +K      + SS  L           +HG  +       
Sbjct: 342 DYLITDANQFSADLCGSPLERYKGRFASEIYSSDKLSTKLLILADIHKHGLYRELDEYFE 401

Query: 279 --------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNR 326
                   I+          + +DV++       L H+ ++L NL     V + I++++ 
Sbjct: 402 ESKRTCHCIIYSPEPDELVCLYMDVTEMRRTYMALDHSEKLLRNLFSNIPVGVEIYNKDG 461

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDE---LLEFLRSANKLPEQLNWKTWKE--NIFSV 381
            L   N   +E++ +         +  E   +   +R   K+ ++ ++    E  N+   
Sbjct: 462 ILIDLNNKDMEIFGVKDKSSTLGVNFYENPNVPSDIRERVKIEDEFDFSQDYEFSNVSDY 521

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y+S +      +    +       +N   G + +  + T ++    +            +
Sbjct: 522 YESEKKGGIELYTKVSKIYDNQGDNN---GFVLINIDNTERISSINRIRDFENFFLLISE 578

Query: 442 HLSEGVA---VFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +   G A   +   +G  IK     ++++ + E+  L+    I N      R    +   
Sbjct: 579 YAKVGYAKLNLLTRNGYAIKQW---YKNMGEDEDTPLAEVVGIYNKMHPQDRVRVLAFFE 635

Query: 498 DLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAE 552
                  TSF  E + L+ GTL   +   +   +     A    + +    ++T+    E
Sbjct: 636 KAKRGEATSFKSEMRVLKPGTLNQWNWVRMNVVLNRYDPANGLIELIGVNYDITELKETE 695

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L E  E   +AD +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y + 
Sbjct: 696 QKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVETED---PEEKLEYAKM 752

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++ +LL L++DILDL+ ++AG     +    +N L  ++ +S+  ++    + +   
Sbjct: 753 VEENNELLLQLISDILDLSKIEAGTFDFKFRDFDINTLCGDLVRSMQLRVKP-GVELIFE 811

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S       V+D  RL Q+ S  ++NA+ F++ GS  I     D+      V + G  I  
Sbjct: 812 STLPQCVIVSDPNRLHQVVSNFINNAIKFTTTGSIRIGYDKPDDKHLRVYVTDTGIGIAP 871

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + C+ +F+RF+      Q  G GLGLSI +S I   GG + ++S     +T    +P +
Sbjct: 872 EACRKIFDRFIKLNSFVQ--GTGLGLSISKSIIEQLGGTIGVNSELGKGSTFWFILPLE 928


>gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1308

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 97/510 (19%), Positives = 198/510 (38%), Gaps = 28/510 (5%)

Query: 294  DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
            D+S+     +QL      L N    I+  D        N+++  L       +       
Sbjct: 574  DISERKQAQEQLNQINCALENAVEGISRLDTQGRYLMVNKAYAALLGYQPQEIIGKEWQI 633

Query: 354  ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
             +    +   KL  Q      +  + +  K        ++      +          G  
Sbjct: 634  TIHPSEQDKMKLAYQT--MLTQGKVEAEVKGVRKDGSVFYKQV-TMISAYDQQKQFIGHY 690

Query: 414  WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               +++T +   +       +   +  +H   G      +G +   N    +       +
Sbjct: 691  CFAKDITERKQADEILKKYAQDFTDLYNHAPCGYHSLDENGLLVQINDTELNWLGYTREQ 750

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEY--S 529
            L        +    SR        ++F+     F      K+L+  L   + +V+    +
Sbjct: 751  LLGKVKFYELLTPESR--------EVFSQNFERFKQRGWVKALEFELLRANGTVMPVMLN 802

Query: 530  IIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
               + ++Q        T  ++T   +AE  L +  +    A+  K+ F+ ++S+ELR+PL
Sbjct: 803  ATAVKDSQGNYLISRSTIFDITKRKQAELELQKAQKEAIAANRAKSIFLANMSHELRTPL 862

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              I+GFT LL   +   L  +  + ++ I+ S   LL L++DILDL+ ++ G +    + 
Sbjct: 863  NAILGFTQLL--GRDHCLRPEHLERLQIINRSGEHLLGLIDDILDLSKIETGKIAAFLTG 920

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
              L  LL  V++ +  K     +R+ +     L  ++  D ++L Q+   +L+NA+ F+ 
Sbjct: 921  FDLYHLLVTVEEMLQPKAKTRGLRLIIEKSFDLPQYIKTDEKKLRQVLINLLNNAIKFTQ 980

Query: 704  KGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGL 758
            +G+ ++      A       +F V++ G  +  D    +F  FV      +  +G GLGL
Sbjct: 981  EGTVILRVKPKAAENTPQRLVFEVEDTGVGMAPDDIDQLFKVFVQAEAGKKLNQGTGLGL 1040

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +I + F+ L GG + + S+    +  +  I
Sbjct: 1041 AISQKFVQLMGGEIEVKSTLGKGSVFSFEI 1070



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 108/336 (32%), Gaps = 55/336 (16%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  +         IL   + AI   D  + +   N+   +++   +  +   P       
Sbjct: 453 EEALKKSQARLSGILKIASDAIVSVDHQQKIILFNQEAEKVFGYSVKEVLGKPL------ 506

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV--------------I 403
               +  LPE+   K  +      + ++     T   P G+ L +               
Sbjct: 507 ----SLLLPEKFQLKHHQ------WVNNFAQSGTLKRPMGKRLEIWGRRQDASEFPAEAS 556

Query: 404 VTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           ++    GG I +    ++++ +   + + N +       +++  EG++     GR  + N
Sbjct: 557 ISRLEIGGEIILTVILQDISERKQAQEQLNQIN----CALENAVEGISRLDTQGRYLMVN 612

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A+ +L   +   +        I      + +E D   L    + +       ++G  + 
Sbjct: 613 KAYAALLGYQPQEIIGKEWQITI------HPSEQDKMKLAYQTMLTQGKVEAEVKGVRKD 666

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            S    + ++I   + Q              ER   + +E L+K  +    F    ++  
Sbjct: 667 GSVFYKQVTMISAYDQQKQFIGHYCFAKDITER--KQADEILKKYAQ---DFTDLYNH-- 719

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                   G+  L +   L  +N  +  ++ Y    
Sbjct: 720 -----APCGYHSLDENGLLVQINDTELNWLGYTREQ 750



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 92/292 (31%), Gaps = 40/292 (13%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           L  I  +++E     ++L+      +   + +       D  G  L  N +Y       G
Sbjct: 568 LTVILQDISERKQAQEQLNQINCALENAVEGIS----RLDTQGRYLMVNKAYAALL---G 620

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK----SYKIVRVLNSF 286
              Q+ IG+  ++     ++  +  +         V     G  K     YK V +++++
Sbjct: 621 YQPQEIIGKEWQITIHPSEQDKMKLAYQTMLTQGKVEAEVKGVRKDGSVFYKQVTMISAY 680

Query: 287 -------GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSF 335
                  G    A D+++    ++ L    +    + ++        D+N  L   N + 
Sbjct: 681 DQQKQFIGHYCFAKDITERKQADEILKKYAQDFTDLYNHAPCGYHSLDENGLLVQINDTE 740

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
           +         L       ELL         PE     +     F      +  +      
Sbjct: 741 LNWLGYTREQLLGKVKFYELL--------TPESREVFSQNFERFKQRGWVKALEFELLRA 792

Query: 396 NGQTLHVIVTSN----PRGGTIW---MFENLTVQVDLETKYNTLVKVQGETI 440
           NG  + V++ +      +G  +       ++T +   E +     K Q E I
Sbjct: 793 NGTVMPVMLNATAVKDSQGNYLISRSTIFDITKRKQAELELQ---KAQKEAI 841


>gi|294646773|ref|ZP_06724396.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807695|ref|ZP_06766488.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292637933|gb|EFF56328.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445131|gb|EFG13805.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|295084434|emb|CBK65957.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 820

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/636 (18%), Positives = 250/636 (39%), Gaps = 43/636 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ + +   ++L       + +        W  +   +I +  + Y      E +    
Sbjct: 45  RDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNI-FHYLGYTGVLCEENVQNL- 102

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKIV--------RVLNS 285
           AI +  +L  EE ++  +       ++   E++S     N + + +         R   S
Sbjct: 103 AIEKYVELIVEEDRQSFMEWCRVNEKELNMESISYRVRLNGEIFYMRIQTYLREQRSDGS 162

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           F   G   +++      + +      ++N   +I     +  + F NR F     +    
Sbjct: 163 FNIEGYIQNITDIQHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF-----LYNHG 217

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---------N 396
           ++ N    +L  +  +A+        + W E    V     ++    H            
Sbjct: 218 ISENEDISQLKIYNVAADM----PTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAYE 273

Query: 397 GQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPD 453
           G   +V  T++    + W F  +++ ++  E +   L ++   TI++L  G+ V     D
Sbjct: 274 GTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINND 331

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R    N    +     +N               +    + D           +  E K 
Sbjct: 332 FRYIYRNREAYN-RDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEGKD 390

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G + +L    +      L +   +    ++T+    +R L    E    +D +K++F+
Sbjct: 391 RNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKAEMSDSLKSAFL 450

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL L+N+ILDL+ +
Sbjct: 451 ANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQLINEILDLSKI 507

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G ++ ++    L++L  EV  +   +  +  + +   S  +      D+ R+ Q+ S 
Sbjct: 508 ESGTIEFSFGPASLHNLCREVHDAHIFRTPQ-GVSLVYESSDESLMIETDKNRVFQVISN 566

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA+ F+ +GS +       +   +F V + G+ I  +    VF RF    +  Q  G
Sbjct: 567 LIGNAVKFTKEGS-ISYGYKLADNQIVFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--G 623

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI +S +   GG +S++S     TT    +P
Sbjct: 624 TGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 659



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 118/365 (32%), Gaps = 50/365 (13%)

Query: 109 DTDLLSFENWLKFHHY-IKLSKATEKLRKEGQSFDLVAET-----QNDCAIKIEGRVSGS 162
           + D  SF  W + +   + +   + ++R  G+ F +  +T     ++D +  IEG     
Sbjct: 113 EEDRQSFMEWCRVNEKELNMESISYRVRLNGEIFYMRIQTYLREQRSDGSFNIEGY---- 168

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
                I ++  I               N I+      ++    ++     G I++AN  +
Sbjct: 169 -----IQNITDIQ-----------HRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF 212

Query: 223 KKN---TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK--NFCETVSTLEHG----- 272
             N   +E E I   K    +  +  +E               NF     +  +      
Sbjct: 213 LYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAY 272

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI--FDQNR 326
               Y +            A D+S+ I    Q+    +     ++NL   I +   + + 
Sbjct: 273 EGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINNDF 332

Query: 327 YLQFHNRSF--VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              + NR     +L++ D        ++ +    + +  K  E +   T  + +    + 
Sbjct: 333 RYIYRNREAYNRDLYKNDP----VGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEG 388

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            + + +   L + + + V          + +  ++T    ++ +  +  +   E  D L 
Sbjct: 389 KDRNGNMIIL-DKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEK-AEMSDSLK 446

Query: 445 EGVAV 449
                
Sbjct: 447 SAFLA 451


>gi|313683144|ref|YP_004060882.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313156004|gb|ADR34682.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 1421

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 111/521 (21%), Positives = 223/521 (42%), Gaps = 48/521 (9%)

Query: 293 IDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLA 347
           +D+S+      +L ++ E   ++       + + D  N  +   N +  + +      + 
Sbjct: 436 LDISERKHAEIELRNSEEKFRSMFMKQDAPMLLLDPENGVILDVNHAAEKFYGYSADEME 495

Query: 348 TNPSNDELLEFLRSANK------LPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTL 400
              + D++    + A K      L E+ N+  +K  + S   KS E H   + L N + L
Sbjct: 496 -KMTIDQINTLSKEALKNEMESALAEERNFFVFKHRLKSGEIKSVEVHSSPFLLGNRRVL 554

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             IV             ++T +   E K   +  +    +D+ + G+ +  P+  I  ++
Sbjct: 555 FSIVF------------DITKREKAEEKLLAVSSLNKALLDNSAVGIFLASPERMIIETS 602

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                ++    + L  G   R I      + +E    D          D R +++     
Sbjct: 603 KRAYEMFGYSADEL-IGKSFRII------HVSEESFEDFGTQYQNLLSDGRTNIEYPFIK 655

Query: 521 LSDSVLEYSI--IPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            +   +  S+   PL  +      + T  ++T+   AERA+    E   +A+  K+ F+ 
Sbjct: 656 KNGVKIWCSVSGTPLDESDLSKGIIWTLQDITERKAAERAMLIAKEQAEEANISKSRFLA 715

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  I+G + ++  S +     K+  ++  I +SS +LL ++NDILD + ++
Sbjct: 716 NMSHEIRTPMNAILGLSQVMLDSDMA---PKEKDFLLKIHSSSKMLLGIINDILDYSKIE 772

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693
           A  ++L +    L ++L ++K        E+ + +       +    V D  RL Q+ + 
Sbjct: 773 ANKLELEHKNFNLENVLAQLKVLFTQSAAEHGLELYFHKKSDVPEIIVGDELRLDQVLTN 832

Query: 694 ILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           +LSNA+ F+  G+    + LK   +N   I FS+ + G  I ++    +F  F       
Sbjct: 833 LLSNALKFTHHGTVTLAIELKERHENRAIIGFSLTDTGIGISDEDISKLFQPFNQADSSM 892

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  G GLGL+I +  +N  GG +S+SS     +T +  I
Sbjct: 893 TRKYGGTGLGLAISKRLVNAMGGELSLSSVKGEGSTFSFDI 933



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 102/279 (36%), Gaps = 25/279 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQK 235
           +++E      +L N    F+ +F   D  +   D + G IL  N + +K         +K
Sbjct: 437 DISERKHAEIELRNSEEKFRSMFMKQDAPMLLLDPENGVILDVNHAAEKFYGYSADEMEK 496

Query: 236 A-IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE----AG 290
             I +   L KE +K  M S+ A E+NF      L+ G  KS ++       G       
Sbjct: 497 MTIDQINTLSKEALKNEMESALAEERNFFVFKHRLKSGEIKSVEVHSSPFLLGNRRVLFS 556

Query: 291 IAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           I  D++K     ++L         +L N  V I +    R +   ++   E++      L
Sbjct: 557 IVFDITKREKAEEKLLAVSSLNKALLDNSAVGIFLASPERMIIETSKRAYEMFGYSADEL 616

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                       +  + +  E  ++ T  +N+ S  +++   +  +   NG  +   V+ 
Sbjct: 617 IGKS-----FRIIHVSEESFE--DFGTQYQNLLSDGRTN--IEYPFIKKNGVKIWCSVSG 667

Query: 407 NPRG------GTIWMFENLTVQVDLETKYNTLVKVQGET 439
            P        G IW  +++T +   E       +   E 
Sbjct: 668 TPLDESDLSKGIIWTLQDITERKAAERAMLIAKEQAEEA 706



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 76/260 (29%), Gaps = 27/260 (10%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP------SNDELLE 357
           Q      +  N    I + DQNR +   N+ F ++       L          S++  L 
Sbjct: 326 QKQFLDNVFENNAAGIFVVDQNRNIITSNQRFCDILGYTKEELIGKNASFLHVSDESYLA 385

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           F       P  L  K  + +        +  K+      G ++ +   +    G IW   
Sbjct: 386 FA------PHFLKAKNGERSKVEYLIKDKNGKEVLCEFLGMSIEIDKNNT---GVIWSVL 436

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSP 476
           +++ +   E +     +            + +  P +G I   N A              
Sbjct: 437 DISERKHAEIELRNSEEKFRSMFMKQDAPMLLLDPENGVILDVNHAAEKF---------Y 487

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLP 534
           G     +        N      L   + ++  +ER        L S  +  +E    P  
Sbjct: 488 GYSADEMEKMTIDQINTLSKEALKNEMESALAEERNFFVFKHRLKSGEIKSVEVHSSPFL 547

Query: 535 NAQTMLTFVNVTDSVRAERA 554
                + F  V D  + E+A
Sbjct: 548 LGNRRVLFSIVFDITKREKA 567


>gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 1272

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 201/539 (37%), Gaps = 39/539 (7%)

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
           E       ++ R         +  D ++ +  +++  H   IL ++   I + D      
Sbjct: 213 EDAERTQKELTRYKEHL--ENLVEDRTERLRESEEYNHL--ILQSVAEGIFVTDTEGLCT 268

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           + N +  ++   ++  L     +D L            + +   +  +   +  +S    
Sbjct: 269 YANEAAQKMLGYEIKELVDENIHD-LFHHSNDDGSPHLREDCPIYWAHTKGI--TSFRRD 325

Query: 390 DTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           + +   +G   +   TS P+       G++ +F +++ +  +E             +   
Sbjct: 326 EVFWRKDGSFFYTSYTSVPQRKDKTIIGSVVVFRDISARKKVEDALRESEYHLKSILMTT 385

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           +EG         I   N     +       L        +      + +E +   L   +
Sbjct: 386 NEGFLWVNNGAHIVSVNDTMCKISSRAREDL--------LGRALFEFLDEENIAILNEQL 437

Query: 504 ITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALT 556
                 +    +  L     S  + E+   PL +   + T       ++T   + E  L 
Sbjct: 438 RLRNTGQTSVYEIALNRPDGSKVICEFHATPLYDKNGVKTGSFAMVSDITHRKKMEEELI 497

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              +    A   K+ F+ ++S+E+R+P+  ++G T L   +    L  KQ  Y+  I  S
Sbjct: 498 VARDKAEAATRAKSDFLANMSHEIRTPMNAVMGMTHLALQT---DLTPKQRDYLHKIQIS 554

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDG 675
           +  LL ++NDILD + ++AG M +      L+++L  +   IA K+ E   I +   +  
Sbjct: 555 ANSLLGVINDILDFSKIEAGKMGMESIDFNLDEVLENLSTMIAVKLREKEGIEVLFDTGA 614

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI 730
            +    V D  RL QI   + +N++ F+  G  V+       G+      FSV++ G  +
Sbjct: 615 DVPRQLVGDPLRLSQILVNLANNSIKFTESGEIVVSTKVVSQGNHVIVLQFSVRDTGIGL 674

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            E+    +F  F        RR  G GLGLSI +  + + GG + + S     +T    
Sbjct: 675 TEEHMVQLFTAFSQADTSITRRYGGSGLGLSICQRLVKMMGGKIWVESIYGKGSTFYFT 733


>gi|299145369|ref|ZP_07038437.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298515860|gb|EFI39741.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 808

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 108/521 (20%), Positives = 213/521 (40%), Gaps = 31/521 (5%)

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
           R   SF   G   +++      + +      ++N   +I     +  + F NR F     
Sbjct: 158 RPDGSFNIEGYIQNITDIQHRRNDINTLTHAINNAKESIFAARPDGTIIFANRRF----- 212

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----- 395
           +    ++ N    +L  +  +A+        + W E    V     ++    H       
Sbjct: 213 LYNHGISENEDISQLKIYNVAADM----PTQEAWNERCKDVIHGGSSNFVAHHPSKINRD 268

Query: 396 ----NGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV- 449
                G   +V  T++    + W F  +++ ++  E +   L ++   TI++L  G+ V 
Sbjct: 269 ILAYEGTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVK 326

Query: 450 -FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
               D R    N    +     +N               +    + D     +     + 
Sbjct: 327 EINNDFRYIYRNREAYN-RDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSGKGMHWT 385

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            E K   G L +L    +      L +   +    +VT+    +R L    E    +D +
Sbjct: 386 VEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKAEMSDSL 445

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL L+N+IL
Sbjct: 446 KSAFLANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQLINEIL 502

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ +++G ++ ++    L++L  EV  +   +  +  + +   S  +      D+ R+ 
Sbjct: 503 DLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQ-GVNLVYESSDESLMIETDKNRVF 561

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ S ++ NA+ F+ +GS +       +   +F V + G+ I  +    VF RF    + 
Sbjct: 562 QVISNLIGNAVKFTKEGS-ISYGYKLVDNQIVFHVTDTGTGIEPEKVGRVFERFAKLNNH 620

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 621 AQ--GTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659



 Score = 54.2 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 111/335 (33%), Gaps = 39/335 (11%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
           ++R  G+ F +  +T     ++ E R  GS       +++G    + +   +     N I
Sbjct: 138 RVRLNGEIFYMRIQT----YLREE-RPDGS------FNIEGYIQNITDIQHR----RNDI 182

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKN---TETEGIVFQKAIGESRKLFKEEIK 249
           +      ++    ++     G I++AN  +  N   +E E I   K    +  +  +E  
Sbjct: 183 NTLTHAINNAKESIFAARPDGTIIFANRRFLYNHGISENEDISQLKIYNVAADMPTQEAW 242

Query: 250 KRMISSSALEK--NFCETVSTLEHG-----NNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
                        NF     +  +          Y +            A D+S+ I   
Sbjct: 243 NERCKDVIHGGSSNFVAHHPSKINRDILAYEGTMYNVTNDSGEESYWSFAHDISERIRYE 302

Query: 303 DQLTHTYE----ILHNLTVAIAI--FDQNRYLQFHNRSF--VELWEIDLAFLATNPSNDE 354
            Q+    +     ++NL   I +   + +    + NR     +L++ D        ++ +
Sbjct: 303 AQIKRLNQIMDTTINNLPAGIVVKEINNDFRYIYRNREAYNRDLYKNDP----VGKNDFD 358

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
               + +  K  E +   T  + +    +  + + +   L + + + V          + 
Sbjct: 359 FYPPIVAEKKRQEDIQVATSGKGMHWTVEGKDRNGNLIIL-DKRKIRVDGDELSSPIIVS 417

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           +  ++T  +++  +     K + E  D L      
Sbjct: 418 IEWDVTE-LEMMKRELLSSKEKAEMSDSLKSAFLA 451


>gi|291566207|dbj|BAI88479.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1006

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 126/663 (19%), Positives = 250/663 (37%), Gaps = 59/663 (8%)

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            I  + + +G CA +         +++         ++     F+ +  ++    + +  
Sbjct: 368 PIFDDSKYAGCCAII---------TDINYRKKAELAIAVSEKRFQEIASTISQFFFVKCA 418

Query: 212 A-GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK----NFCETV 266
             G  ++ + +Y+K          +           E +  +I+    +        E  
Sbjct: 419 NSGQYIYLSPAYEKIWGRTCESLYQNPDSWLNTIYPEDRGAVINYQEKQHQNNLVKREYR 478

Query: 267 STLEHGNNKSY--KIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEIL----HNLT 316
                G  +    ++  + N  G      G A D+S        L  + E+L    ++  
Sbjct: 479 IIRNDGVIRWVYEEVNIIYNDDGSPLRYVGFAEDISDRKQAELALAESEELLRLAVNHAP 538

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL-NWKTWK 375
               I+D +R L+F N+  +E          T  S +  +        LPE+  ++    
Sbjct: 539 DIFVIYDSDRRLKFVNQRVLE---------RTGWSEETFIGRRDEELFLPEETCHYLPLL 589

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETK 428
           E       + +  + T  LPN     VI+   P           + +  ++T     E K
Sbjct: 590 EKTIQTL-TIQIGEATITLPNQTPKTVIIKYLPLLDKQGRLSQILGLTFDITHYKQAEQK 648

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                +      +  + G+A+    G     N +   +   +E  L      ++I     
Sbjct: 649 LRDSEERFRTAFEDAAIGMALLSSQGNCLKVNRSLCEMLGYQEAELLQLK-CKDITHPED 707

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                     L    +  +  E++ L     ++    +  S+  + N   +  +      
Sbjct: 708 YEQEVKSIKKLIEGQVKYYYVEKRYLHKQGYVI---WVLLSMSIVRNIDGVPLYFIAQAQ 764

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             +ER            +++KN F+  VS+ELR+PLT I G   LL +        +  +
Sbjct: 765 NISERR---------AVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHK 815

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++E     +  L+ +VNDILD+  +++G ++         +L+ +V  S+    H ++I 
Sbjct: 816 FIEIALLETERLVRMVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSIT 875

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++++         A R  +LQ  + ++ NA+ FS   +TV L A   +   +F V++ G 
Sbjct: 876 LEIL--PTSVQLWAARDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGR 933

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +  K++F+RF  V  +   Q+ G GLGLSI +S I  HGG + + S     +T   
Sbjct: 934 GIPPEKLKTIFSRFQQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYF 993

Query: 787 RIP 789
            IP
Sbjct: 994 TIP 996



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 58/477 (12%), Positives = 142/477 (29%), Gaps = 42/477 (8%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++++       L    +  + + ++    VW  D      + N               +
Sbjct: 259 QDISDRQKTEAALIKSEAKLRTIIETTLEGVWIIDSDSMTTFVNQQMANMLGYTQEEITQ 318

Query: 236 A-----IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-----KIVRVLNS 285
           +     + E      E   +R     A +  F        +G+          I      
Sbjct: 319 SSLFKFVDEQDYPIVENYLQRRREGIAEQHEFQFKRK---NGDILWTILSTNPIFDDSKY 375

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF-----DQNRYLQFHNRSFVELWE 340
            G   I  D++        +  + +    +   I+ F       +    + + ++ ++W 
Sbjct: 376 AGCCAIITDINYRKKAELAIAVSEKRFQEIASTISQFFFVKCANSGQYIYLSPAYEKIWG 435

Query: 341 IDLAFLATNPSNDELLEFLRSANK-----LPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
                L  NP  D  L  +   ++       E+ +     +  + + ++    +  +   
Sbjct: 436 RTCESLYQNP--DSWLNTIYPEDRGAVINYQEKQHQNNLVKREYRIIRNDGVIRWVYEEV 493

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           N    +   +     G     E+++ +   E       ++    ++H  +   ++  D R
Sbjct: 494 N-IIYNDDGSPLRYVGFA---EDISDRKQAELALAESEELLRLAVNHAPDIFVIYDSDRR 549

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           +K  N          E                + +Y       L    I +   +     
Sbjct: 550 LKFVNQRVLERTGWSEETFIGRRDEELFLPEETCHY-----LPLLEKTIQTLTIQIGEAT 604

Query: 516 GTLELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            TL   +   +    +PL +     +Q +    ++T   +AE+ L +  E  R A E   
Sbjct: 605 ITLPNQTPKTVIIKYLPLLDKQGRLSQILGLTFDITHYKQAEQKLRDSEERFRTAFEDAA 664

Query: 571 SFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             +  +S +  + L       ++L  + ++L  L  K   + E        +  L+ 
Sbjct: 665 IGMALLSSQ-GNCLKVNRSLCEMLGYQEAELLQLKCKDITHPEDYEQEVKSIKKLIE 720



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 95/283 (33%), Gaps = 28/283 (9%)

Query: 305 LTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           + H  +IL  N  +   I+D+   +   ++   E++    + +     N+  L F   ++
Sbjct: 145 VNHQLKILIDNSPLGTIIWDRKLRVIQWSKQAEEIFGWSESEVLGKSMNEWKLIFEEDSD 204

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL---HVIVTSNPRGGTIWMF---- 416
           ++    N +T  + IF+  +      +  +  +G  +             G + M     
Sbjct: 205 RV----NRET--QTIFANQEKRRICINRNYRKDGSVIYCEWYNSNFYDESGKLNMLLSWV 258

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++++ +   E             I+   EGV +   D      N    ++    +  ++ 
Sbjct: 259 QDISDRQKTEAALIKSEAKLRTIIETTLEGVWIIDSDSMTTFVNQQMANMLGYTQEEITQ 318

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLP 534
                   ++  ++ +E D   +   +    +   +  +   +  +  +L    S  P+ 
Sbjct: 319 --------SSLFKFVDEQDYPIVENYLQRRREGIAEQHEFQFKRKNGDILWTILSTNPIF 370

Query: 535 N----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +    A       ++    +AE A+    +  ++     + F 
Sbjct: 371 DDSKYAGCCAIITDINYRKKAELAIAVSEKRFQEIASTISQFF 413


>gi|144899476|emb|CAM76340.1| sensory box histidine kinase/response regulator [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 866

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 114/543 (20%), Positives = 224/543 (41%), Gaps = 54/543 (9%)

Query: 278 KIVRVLNSFGEAG----IAIDVSKEITVNDQLTHTYEILHNLTVAIA-----IFDQNRYL 328
           ++V +    G  G    I  D++ +    D+L      L   ++ +A       D +  +
Sbjct: 75  RVVEIRADDGGDGLVLLIHRDLTAQCRALDRLNQLESELEQ-SLGLASMGSWRLDHHGMM 133

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              +R    +       ++      E +E    A+      +W     +I  V +     
Sbjct: 134 LHLSREHGAMLLGHPEAMSL--PMSEFIERYVHAD------DWPVLSAHIAHVEELGWPE 185

Query: 389 KDTWH------LPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
             T H       P+G+ LH+ VTS  R G  + + +N+T +  +        +     I+
Sbjct: 186 GFTEHFEYRALRPDGRVLHMAVTSAIRSGQVVGVTQNITERKRMVEAVEANERRLRTIIE 245

Query: 442 HLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
                + +    + ++  +N +FR+L+   ++          + ++ + Y +  D   L 
Sbjct: 246 TTPLPLVITRAKEAKVLYANSSFRALFDIPDDY-------DGVISSGTFYQHPEDRERLI 298

Query: 501 A-----AIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                  ++ +F+   ++  G      ++ +VLE    P       +   ++T   + E 
Sbjct: 299 ETLGRDGVVRNFEALGRTWSGRNFWASVTAAVLELDGEP----SLFVAVNDITAVKKHEA 354

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +A   A   K+ F+  +S+E+R+P+  II    LL  +    L ++Q  ++E +
Sbjct: 355 ELYAAKDAAEAAARTKSEFLAMMSHEIRTPMNGIIVMARLLLDT---DLTAEQRDWLEIV 411

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           ++S   L+ ++NDILD + +++G + +      L  L+  V + +  +  E  + I V  
Sbjct: 412 TSSGDTLMTVLNDILDFSKLESGKLDIEELPFDLPALIGGVVELMRARAEEKGLSISVHY 471

Query: 674 -DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
             G  G   AD  RL Q+   ++ NA+ F+  G   + L+  R +GD     F+V++ G 
Sbjct: 472 GAGVPGVIRADPTRLRQVLLNLVGNAIKFTEMGGVHLELRVERRDGDDLILRFAVRDTGI 531

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +    +F  F        RR  G GLGL I +  +NL GG + + S +   TT   
Sbjct: 532 GIPAEALTRLFAAFSQVDSSINRRFGGTGLGLVICQRLVNLMGGSIEVDSVEGYGTTFTF 591

Query: 787 RIP 789
            +P
Sbjct: 592 TLP 594



 Score = 41.1 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 84/271 (30%), Gaps = 47/271 (17%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEIDLAFLATNPSNDELLEFLRSANK 364
             +  H+    + + D+   +   N++   +   W  D   L    S   L    ++  +
Sbjct: 11  YEQAFHHCRDGLVLVDRAGIVGAANKAMAHMVPGWPFDAVGL----SYFSLTGRFQTEGE 66

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
                    W+ +                L +G+ + +       G  + +  +LT Q  
Sbjct: 67  ---------WRLD----------------LADGRVVEIRADDGGDGLVLLIHRDLTAQCR 101

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
              + N L     +++   S G       G +   +    ++       +S       ++
Sbjct: 102 ALDRLNQLESELEQSLGLASMGSWRLDHHGMMLHLSREHGAMLLGHPEAMSLP-----MS 156

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-------LLSDSVLEYSII-PLPNA 536
               RY +  D   L A I  +  +E    +G  E            VL  ++   + + 
Sbjct: 157 EFIERYVHADDWPVLSAHI--AHVEELGWPEGFTEHFEYRALRPDGRVLHMAVTSAIRSG 214

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           Q +    N+T+  R   A+      LR   E
Sbjct: 215 QVVGVTQNITERKRMVEAVEANERRLRTIIE 245



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 12/202 (5%)

Query: 116 ENWLKFHHYIKLSKATEKLRKEG--QSFDLVAETQNDCAIKIEGRVSGSCAF--LRILSL 171
           E ++    +  LS     + + G  + F    E     A++ +GRV        +R   +
Sbjct: 160 ERYVHADDWPVLSAHIAHVEELGWPEGFTEHFEY---RALRPDGRVLHMAVTSAIRSGQV 216

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL-VWHRDQAGDILWANISYKKNTETEG 230
            G+   + E     + +  +    + + ++     V  R +   +L+AN S++   +   
Sbjct: 217 VGVTQNITERKRMVEAVEANERRLRTIIETTPLPLVITRAKEAKVLYANSSFRALFDIPD 276

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFC--ETVSTLEHGNNKSYKIV-RVLNSFG 287
             +   I         E ++R+I +   +      E +     G N    +   VL   G
Sbjct: 277 -DYDGVISSGTFYQHPEDRERLIETLGRDGVVRNFEALGRTWSGRNFWASVTAAVLELDG 335

Query: 288 EAGIAIDVSKEITVNDQLTHTY 309
           E  + + V+    V       Y
Sbjct: 336 EPSLFVAVNDITAVKKHEAELY 357


>gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1295

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 123/781 (15%), Positives = 293/781 (37%), Gaps = 69/781 (8%)

Query: 53   KKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD-------ETPEIIG-QLHQRID 104
             +       L++      ++ S++     +    D             EI G  +   + 
Sbjct: 261  SERKRIEGELADSE---RRFRSVVESLKEVIFRTDANGCWTYLNPAWTEITGFAIQDSLG 317

Query: 105  IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVS---G 161
             P   +   +   +          +    +R+E               ++I  R     G
Sbjct: 318  RPSLKSVPAADRRYAAVRFAALARQEIASIREEA---RYRTRDGRGRWLEIFARAEFDDG 374

Query: 162  SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
                 R   + G  +++ E  L  ++L   +   + LF+ L   ++ +D AG  L  N +
Sbjct: 375  G----RFTGIAGTLNDVTERRLALEQLHQQLHFVQELFEVLPLPIYLKDTAGRYLQFNKA 430

Query: 222  YKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
             +       +E  G      +   +     E  +++++++  +    +         +  
Sbjct: 431  SEDFFGIRRSEWLGRTVADLLPAEQAALHAERDRQLLATAGQQVYEAQVEGRDGRRRDTI 490

Query: 277  YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRYLQF 330
            Y    +    G      G  +D+++       +      L ++T  +  A+F     L+ 
Sbjct: 491  YHKATLTRPDGSIAGLLGAIVDITERKAQEAAVGAAESRLRHITNTVPAAVFQCEIGLRG 550

Query: 331  HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
               +F+      ++ +  +P      +      ++ +    +  +    +  +      +
Sbjct: 551  VRYTFL---SDRVSEITGHPREAVFADASVITGQIADDDRQRVMRGAWVAAMQRQAWQDE 607

Query: 391  TW-HLPNGQTLHVIVTSNP------RGGTIW--MFENLTVQVDLETKYNTLVKVQGETID 441
               HLPN     +    +P       G TI+  +++++++  + + +         E  +
Sbjct: 608  YRIHLPNEALRWIRCQIHPAPELAADGATIYTGIWQDVSLLKEADARLR-------EVTE 660

Query: 442  HLSEGVAVFGPDG----RIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDG 496
            ++   V  +   G      +  +     +     E  ++    + ++     R       
Sbjct: 661  NIPVAVYQYHLSGAGGRTFRFFSRGLAQICGLSAEEAMASPEALHDLVHADDRELVNMSI 720

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERA 554
                AA  + +  + + +      +     E     +P+  ++      +V+ +  A   
Sbjct: 721  AQA-AASQSPWSVDFRLIDRHSGRIVWVHGEAHGKAMPDGSSLWNGYLADVSSAKMASEQ 779

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L    E    A+  K++F+ ++S+E+R+PL  +IG TDLL  S   +L+ +Q  +++ + 
Sbjct: 780  LRLAKEDAEAANRAKSAFLANMSHEIRTPLNGVIGMTDLLLGS---TLSHRQRAHLQIVK 836

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             SS  LL ++NDILD + ++AG +     +  L  ++ E+ +++A +  +  I +     
Sbjct: 837  QSSDALLTILNDILDFSKIEAGKLVAERVSFNLRQVVGEMLKALALRASDKGIELIGDIA 896

Query: 675  GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSS 729
              +    + D  RL Q+   ++ NA+ F+S+G  ++ L+ +  N D     F++ ++G  
Sbjct: 897  ADVPTHVLGDPGRLRQVLVNLVGNAIKFTSQGEVIVRLECSAGNADEVGLHFAIIDSGIG 956

Query: 730  IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPE+   ++F+ F         +  G GLGL+I      L GGH+ + S+    +T +  
Sbjct: 957  IPEEKLATIFDAFAQADGSITRRYGGTGLGLTISARLAELLGGHIRVDSTLGQGSTFHFT 1016

Query: 788  I 788
            +
Sbjct: 1017 L 1017



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 127/419 (30%), Gaps = 44/419 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLV-WHRDQAGDILWANISYKKNTETEGIV 232
           +   L     +   + + +             V +    AG +    ++Y +N     + 
Sbjct: 9   MRRRLGVDGERAAAVLDELEALAAQGGMSPEAVRFVNGLAGFLGHVGLAYAQNDRDLELK 68

Query: 233 FQKAIGESRKLF--KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
            +     S +L    + ++  + S +    +   T S L  G+  S      L S     
Sbjct: 69  TRSLDLCSDELLEANDRLRSELASRTRAIGSLRHTASGLLGGSEPSLPPGDDLESLSVLM 128

Query: 291 IAIDVSKEITVND------QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             +   +E +  D       L +    L    + ++I D +  + + N  F E+      
Sbjct: 129 ADLVRQREASQRDLQGALLALANQKFALDQHAI-VSITDVHGTITYANDRFCEISGYTRD 187

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH------LPNGQ 398
            L            +  +   P  L  + W         +  +    WH         G+
Sbjct: 188 ELLGRNH------RIVKSGMHPPDLFAQMW---------AVISAGQVWHGELCNRSREGR 232

Query: 399 TLHVIVTSNP---RGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
              V  +  P   +GG     I +  +++ +  +E +     +     ++ L E +    
Sbjct: 233 FYWVNASIVPFCDQGGQPLQYIAIRTDISERKRIEGELADSERRFRSVVESLKEVIFRTD 292

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            +G     NPA+  +             ++++ A   R Y       L    I S  +E 
Sbjct: 293 ANGCWTYLNPAWTEITGFAIQDSLGRPSLKSVPAA-DRRYAAVRFAALARQEIASIREEA 351

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEI 568
           +             LE       +     T +  T +   ER  AL + ++ L    E+
Sbjct: 352 R---YRTRDGRGRWLEIFARAEFDDGGRFTGIAGTLNDVTERRLALEQLHQQLHFVQEL 407


>gi|241203816|ref|YP_002974912.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857706|gb|ACS55373.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 769

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 122/530 (23%), Positives = 219/530 (41%), Gaps = 66/530 (12%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---------LAFLATNPSNDELLE 357
                L      +  FD      F +RS  ++  +           A    +P +  L E
Sbjct: 256 RVETALSRGRCGLWDFDFENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMHPDDGGLYE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
             R+  K           + IF +  +   +   W     Q   VI +++ R   I +  
Sbjct: 316 IARAIGK-----GASGQVDQIFRMRHAGGHY--VWMRARAQ---VIRSNSGRMHLIGIAM 365

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N  F+  +   ++ L PG
Sbjct: 366 DVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPG 425

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T    + A  +R         +    I+  D    S    ++L  +  L+ +     +  
Sbjct: 426 TERSTVNAAAAR--------PVIERRISDADGSGYSRTTEVQLADERWLQINERRTRDGG 477

Query: 538 TMLTFVNVTDSVRAERALTE-----------------------------------KNEAL 562
            +    ++T   R +  L E                                   + E  
Sbjct: 478 RVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANSNYQAEKERA 537

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILL 621
             A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L S K  +Y   I  S   LL
Sbjct: 538 EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLL 597

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N++NDILD++ ++AG ++L+   I L  L+ E  +  A    E NI I+      L + +
Sbjct: 598 NVINDILDMSKIEAGHVRLHCERIDLVPLIEESLRFTAMPAAEKNIVIEQRICSGL-TLM 656

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR+ + Q+   +LSNA+ F+  G  + ++  R +G  + ++ + G  IP      +   
Sbjct: 657 ADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVVVTIADTGIGIPRSALSKIGQP 716

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V + +   + G GLGL+I  S  +LHGG + I S +   T I+ RIP
Sbjct: 717 FEQVQSQYAKSKGGSGLGLAISRSLTSLHGGRMKIRSREAVGTVISLRIP 766



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 14/160 (8%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++  +  +     + L +     + A  ++D+N  L   N  F + + +  +
Sbjct: 361 IGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDS 420

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            L        +     +A  + E          I     S  +      L + + L +  
Sbjct: 421 VLVPGTERSTV--NAAAARPVIE--------RRISDADGSGYSRTTEVQLADERWLQINE 470

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                GG + +  ++T+    + +     +    TI  LS
Sbjct: 471 RRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 510


>gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 882

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 124/614 (20%), Positives = 229/614 (37%), Gaps = 56/614 (9%)

Query: 226 TETEGIVFQKAIGESRKLFKE-------EIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           T  +    Q+ I  +R L  E         +  +  +S   ++  E     + G    + 
Sbjct: 25  TPADISDPQELIARARALSDELATDITPGFEALVFKASRGIEDIYELTYIRKDGTR--FP 82

Query: 279 IVRVLNSFGEAGIAI--------DVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNR 326
            V  + +  +   AI        D +      + L         I ++   +    D   
Sbjct: 83  AVVSVTALRDVADAIIGYLLIGTDNTARKEAEEALLKAGALQSAIFNSANFSSIATDAKG 142

Query: 327 YLQFHNRSFVELWEIDLAFL------ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
            +Q  N     +     + +      A      EL+   R+ +          ++  +F 
Sbjct: 143 VIQIFNVGAERMLGYAASEVMNTITPADISDPQELVARARALSAELATPIEPGFEALVFK 202

Query: 381 VYKSSE-THKDTWHLPNGQ----TLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTL 432
             +  E  ++ T+   +G      + V    + +G   G + +  + T +  +E +    
Sbjct: 203 ASRGIEDIYELTYIRKDGTRFPAVVSVTALRDAQGAIIGYLLIGTDNTARKLVEEEQKKS 262

Query: 433 VKVQGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +   +        I+   + +    P G I   N    +L  +  + L  G   ++   
Sbjct: 263 DQRLRDQQFYTRSLIESNIDALITTDPAGIITDVNKQTEALTGSTRDEL-IGAPFKDCFT 321

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              R    +    L    +T ++   +S  G   ++S +   +               +V
Sbjct: 322 DPDR-AEAAIRRVLGEKSLTDYELTVRSRDGKQTVVSYNATTFYDRGRTLQGVFAAARDV 380

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  R E  L +   A   A   K+ F+  +S+E+R+P+  ++G  DLL  +   +L  +
Sbjct: 381 TERKRVEAELQQAKAAAESASRTKSDFLASMSHEIRTPMNAVMGIADLLAKT---ALTPE 437

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +YV+    S   LLNL+NDILDL+ V+A  + L  +   L+D L +  + +A K  E 
Sbjct: 438 QDKYVQIFRRSGDNLLNLINDILDLSKVEASQLDLEQTGFSLSDHLEKAIEMVAPKAQEK 497

Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----F 719
            + +       +    V D  RL Q+   +L NA+ F+  G  V LK  RD         
Sbjct: 498 GLILISEIAPDVSNDLVGDPTRLRQVLLNLLGNAIKFTQAG-QVSLKVERDADGSVPTAL 556

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            FSV + G  I  D    VF RF        RR  G GLGL+I +  + L GG + ++S+
Sbjct: 557 RFSVADTGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKRLVELMGGRIGVTST 616

Query: 778 DEGVTTINCRIPSK 791
               +     +P +
Sbjct: 617 LGQGSVFAFSVPFE 630


>gi|291571976|dbj|BAI94248.1| putative PAS/PAC sensor protein [Arthrospira platensis NIES-39]
          Length = 959

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 100/394 (25%), Positives = 174/394 (44%), Gaps = 22/394 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           MF N   +   E              ++ +EG+    PDGR   +NPA   +   +    
Sbjct: 539 MFSNTIERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYD---- 594

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAA------IITSFDDERKSLQGTLELLSDSVLEY 528
           SP   I N+    ++ Y +      F A      +I+ F+ +     GT   +S++    
Sbjct: 595 SPEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISENARAV 654

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                       T  ++T+  RA  AL    EA   A+  K++F+ ++S+ELR+PL  II
Sbjct: 655 FDAIGELVCYEGTVEDITEGKRAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAII 714

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++++L               +E I  +   LL L+NDILD++ ++AG M L      ++
Sbjct: 715 GYSEILLEEAEELGYEDIVPDLERIYTAGKNLLTLINDILDISKIEAGRMDLFVEAFDVS 774

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            LL  V  +    M +NN  + V     +G   AD  ++ QI   +LSNA  F++ G  +
Sbjct: 775 GLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTDG-KI 833

Query: 709 ILKAAR--------DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            ++ +R        ++G  + F V + G  +  +  + +F  F        RR  G GLG
Sbjct: 834 KIEVSRVSSLPYSQESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDASTTRRYGGTGLG 893

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L+I + F  + GG++ + S+    +T    IP++
Sbjct: 894 LAISDRFCQMMGGNIQVQSTLGEGSTFKVVIPTR 927



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 15/288 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  +  +      ++ +L   + I D    L   N    +L     + LA       +  
Sbjct: 71  EARLEAERDRLQAVIGSLGAGLCILDAQGNLLSMNPKAEQLLGWSESELAGQDLFKLIAP 130

Query: 358 FLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------ 410
            L+    + P  L  K        +    ++ +D     +GQ L V    NP        
Sbjct: 131 HLQQFPQQFPSHLGQKCSPSPE-QLLAPPKSKQDYLACRDGQVLPVSYILNPIVENDAWV 189

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           GT+ +F +++ +   E +    + +   T D    G+      G++   N  F  +W+  
Sbjct: 190 GTVLVFFDISDRQQAEQEAARSMSMLQATFDSTDAGILALDRYGQVCHFNQKFVQMWEVP 249

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E+ L+P  +   +A    +  N          I+             +E     + E   
Sbjct: 250 ESFLNPHQNRSTLAFVMRQLKNPPQ---FLKTIMQLSAQPYIPTYDVVEFKDGRIFEVYS 306

Query: 531 IPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            P          + +F ++T+  R E+AL  + E  +    +   F+ 
Sbjct: 307 HPSKVGNKLVGRVWSFRDITERKRVEKALQNRVEFEQLITNLSTYFIS 354



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 96/290 (33%), Gaps = 31/290 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TETEGIVFQ 234
           +      +L       + +  SL   +   D  G++L  N   ++      +E  G    
Sbjct: 66  QRQQSEARLEAERDRLQAVIGSLGAGLCILDAQGNLLSMNPKAEQLLGWSESELAGQDLF 125

Query: 235 KAIGESRKLFKEEIKKRM-----ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--- 286
           K I    + F ++    +      S   L          L   + +   +  +LN     
Sbjct: 126 KLIAPHLQQFPQQFPSHLGQKCSPSPEQLLAPPKSKQDYLACRDGQVLPVSYILNPIVEN 185

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVEL 338
               G   +  D+S       +   +  +L     +    I   D+   +   N+ FV++
Sbjct: 186 DAWVGTVLVFFDISDRQQAEQEAARSMSMLQATFDSTDAGILALDRYGQVCHFNQKFVQM 245

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           WE+  +FL  +  N   L F+    K P Q      K  +    +      D     +G+
Sbjct: 246 WEVPESFLNPH-QNRSTLAFVMRQLKNPPQF----LKTIMQLSAQPYIPTYDVVEFKDGR 300

Query: 399 TLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              V    +  G    G +W F ++T +  +E      V+ +   I +LS
Sbjct: 301 IFEVYSHPSKVGNKLVGRVWSFRDITERKRVEKALQNRVEFEQ-LITNLS 349



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 8/150 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   E +           I  L  G+ +    G +   NP    L    E+ L+     +
Sbjct: 67  RQQSEARLEAERDRLQAVIGSLGAGLCILDAQGNLLSMNPKAEQLLGWSESELAGQDLFK 126

Query: 482 NIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP----- 534
            IA    ++  +  S      +          KS Q  L      VL  S I  P     
Sbjct: 127 LIAPHLQQFPQQFPSHLGQKCSPSPEQLLAPPKSKQDYLACRDGQVLPVSYILNPIVEND 186

Query: 535 -NAQTMLTFVNVTDSVRAERALTEKNEALR 563
               T+L F +++D  +AE+        L+
Sbjct: 187 AWVGTVLVFFDISDRQQAEQEAARSMSMLQ 216



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 39/150 (26%), Gaps = 16/150 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELL 356
           E  +         I  N    I     +      N +   +   D    L  N ++    
Sbjct: 550 EEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDSPEDLIANLTDVSTQ 609

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI--- 413
            +++   +   +      K ++ S ++S        +  +G T+ +   +      I   
Sbjct: 610 LYVKPTRR--AEFVAAIAKSSVISGFES------QVYRQDGTTIWISENARAVFDAIGEL 661

Query: 414 ----WMFENLTVQVDLETKYNTLVKVQGET 439
                  E++T             +     
Sbjct: 662 VCYEGTVEDITEGKRAAEALERAKEAAETA 691


>gi|217424292|ref|ZP_03455791.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 576]
 gi|217392757|gb|EEC32780.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 576]
          Length = 818

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 171 GARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 226

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 227 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 285

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 286 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 341

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 342 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 401

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 402 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 461

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 462 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 518

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 519 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 578

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 579 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 638

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 639 LHGGKVEAASAGKNRGTTFAITLPA 663


>gi|254413254|ref|ZP_05027025.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179874|gb|EDX74867.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1658

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 139/715 (19%), Positives = 259/715 (36%), Gaps = 62/715 (8%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
            L       +S+        G+          +  ++I+G+ +       I +L  +    
Sbjct: 725  LTPETAQAVSQRYHACVASGE------RMSYEECLQIQGKETW-----WITNLTPLRDSN 773

Query: 179  AETTL---------KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            +               K++   + +      +    +   +Q G+ +  N ++ +    +
Sbjct: 774  SRIYRLIGTSFNISDRKQVEKTLQLQAAAMSAATDGIAILNQRGEYVCLNQAHAQIFGYD 833

Query: 230  GIVFQKA--------IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
                           I E ++L  E I   +           E       G+   +++  
Sbjct: 834  SAAQLLGQNWQTLYDISEYQRLLAESIPLLL----EQGYCRTEAQGLRRDGSTFPHEVSV 889

Query: 282  VLNSFGE-AGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFD-QNRYLQFHNRSF 335
             L   GE  GI  D+++       L  +   +  +  A    + IFD   +   + NR  
Sbjct: 890  TLLPGGERIGIVRDITERKQAEAALRESQHFVQRIAEASPNLLYIFDLNEQRNIYANREM 949

Query: 336  VELWEIDLAFLATN-----PSNDELLEFLRSANKLPE--QLNWKTWKENIFSVYKSSETH 388
                      +        P+     +  R    LP   Q         IF +       
Sbjct: 950  AVFLGYTTEQIQAMGANVLPTLIHPEDLAR----LPAYFQQVQNAADGEIFEIEYRVRDA 1005

Query: 389  KDTWHLPNGQTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
               W    G+      T++ R    +    ++T +  +E       +           GV
Sbjct: 1006 NGEWRTLLGRETPFARTADGRVTQLLGTATDITERQQMEAALQESEQRYELATRAAKVGV 1065

Query: 448  AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS- 506
              +  +      +P  +++   +E  ++   +   I                  A  TS 
Sbjct: 1066 WEWNLETNKFYIDPIIKAILGYDETEIANNFNDWIILIHPDDQSTFLTATQAHLAGETSE 1125

Query: 507  --FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
               +       G++  +         +     + + T  ++T+   AE AL E  EA   
Sbjct: 1126 YRVEHRIMHKDGSIRWIVVRGQAIRDVQGKGIRMIGTNTDITERKLAEIALQEAKEAADA 1185

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A+  K++F+ ++S+ELRSPL  I+GF  L+  S   +L  +    +  I  S   LL L+
Sbjct: 1186 ANRAKSTFLANMSHELRSPLNAILGFAQLMSNSV--TLPQQYQDNLRIIHHSGEHLLTLI 1243

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            N +LDL+ ++AG + LN +T  L+ LL EV+     K++E  ++++      +  +   D
Sbjct: 1244 NQVLDLSKIEAGRITLNETTFNLHHLLGEVEDMFRLKVNEKGLQLRFNWAADVPATIQTD 1303

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
              +L Q+   ++SNA+ F+S GS V+ +   R N D      F +K+ G  I  D  +S+
Sbjct: 1304 EIKLRQVLINLVSNAVKFTSAGSVVMNVAQQRTNDDGRMTLYFEIKDTGCGIAADELESI 1363

Query: 739  FNRF-VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            F  F  S +    + G GLGL I   FI L GG + + S     TT    I +KE
Sbjct: 1364 FEAFVQSQSGVQSQSGTGLGLPITRKFIQLMGGEIRVESQVSQGTTFTFDIQAKE 1418



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 101/335 (30%), Gaps = 50/335 (14%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG------- 238
            +L       K + D++   ++  +  G   + N   K+     G+    A         
Sbjct: 17  AQLQESEHRLKQILDAVPVGIFVSEADGKPDYVNQIGKQILGQGGVESVTADQFIETYRI 76

Query: 239 ----------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
                      +R    + ++ + +    +E    +    +E      Y     L     
Sbjct: 77  YQAGTDEFYPRNRHPLLQALQGKRVRVDDMEIRHRDRTIPVEAWGAPIYDCQGTLTH--A 134

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH-NRSFVE-------LWE 340
               +D+S+       L    + L      +A   +        N++ +          +
Sbjct: 135 IAAFVDISERQPPEQVLADYNQKLEQ---QVAEQTEELRHSQARNQALLAAIPDMIFCSQ 191

Query: 341 IDLAFLATN-----PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK----SSETHKDT 391
            D  F+        PS  +  +FL    K PE +      + I + Y+    S E  +  
Sbjct: 192 ADGTFIDFKPAPTIPSFAQAQDFL---GKKPEDVFPLDIAQKIRAAYQESLVSGEVQQLD 248

Query: 392 WHLPNG---QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           + L      +     +        + +  +++ +   E +    +  Q   +D +S  V 
Sbjct: 249 YQLQIKNQWRDYEARIVPCSNQEILSIIRDISDRKQAEAQ----IAFQASLLDQVSNAVI 304

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
                G I  +N   + +++     +  G  I ++
Sbjct: 305 ATDLAGTIIYTNQFAQRIYQLNPETIL-GQSILDV 338



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 131/412 (31%), Gaps = 40/412 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-----YKKNTETEGIVFQ 234
           +   + ++L +  +  + L  ++  +++     G  +    +     + +  +  G   +
Sbjct: 161 QVAEQTEELRHSQARNQALLAAIPDMIFCSQADGTFIDFKPAPTIPSFAQAQDFLGKKPE 220

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-GIAI 293
                      ++I+     S    +              + Y+   V  S  E   I  
Sbjct: 221 DVFPLD---IAQKIRAAYQESLVSGEVQQLDYQLQIKNQWRDYEARIVPCSNQEILSIIR 277

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+S       Q+     +L  ++ A+   D    + + N+    +++++   +       
Sbjct: 278 DISDRKQAEAQIAFQASLLDQVSNAVIATDLAGTIIYTNQFAQRIYQLNPETI------- 330

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQTLHVIVTS------ 406
            L + +     LP+  +    +E +  V ++     + T    +G T  V  T+      
Sbjct: 331 -LGQSILDVTVLPQ--DKALAQEILAGVQENGYWEGEFTVQRQDGSTFPVYATNTLIRDH 387

Query: 407 --NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAF 463
             NP G  + +  + + Q   E +         +        + ++   + R   SN   
Sbjct: 388 QGNPIGY-VGVSIDSSAQKQAEEQLRQSKHFIEQIAAASPYCLYIYDLIENRNIYSNQEI 446

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE---- 519
            ++      ++          ++     + +   +    + T+ D E   ++  ++    
Sbjct: 447 TTILGYTPEQIQAMG--ETFISSLLHPDDVTIASEQLQKLATAADGEILEIEYRMQDSHG 504

Query: 520 ----LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               L     +          Q + T ++++D  +AE  L    +  R   +
Sbjct: 505 KWHTLFGRETVFARTSDGTVKQVIGTVIDISDRKQAEIELRNSEQLYRTMAK 556



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 98/311 (31%), Gaps = 50/311 (16%)

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV-----AIAIFDQNR 326
           G    +            G  ID+S       +L ++ ++   +       AI +FD N 
Sbjct: 511 GRETVFARTSDGTVKQVIGTVIDISDRKQAEIELRNSEQLYRTMAKHFPNGAIFLFDHNL 570

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK--- 383
                          D   L  + S           N L  Q  W+   E   ++ +   
Sbjct: 571 RYLVA----------DGQSLGKSGSGYS-------RNVLEGQTIWEALSEPECALVEPLY 613

Query: 384 --SSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNTLVKV 435
             +    + T  +P    +H++ T   +         + + +++T +   E         
Sbjct: 614 RDALAGIEQTLEIPYRHCIHLVQTRAVQNDAGEIMAGMVVVQDITERKQAEESLRERETF 673

Query: 436 QGETIDHLSEGVAVFG--PDGRIKLS--NPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
                D +   V +     +G       NP    +     + LS  T    +    ++  
Sbjct: 674 LRSIYDGIEAAVFIVDVLENGEFCYVSINPTHERMSGLLSSELSGKTPQEALTPETAQAV 733

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLPNA-----QTMLTFVNV 545
           ++     + +        ER S +  L++   ++    ++ PL ++     + + T  N+
Sbjct: 734 SQRYHACVASG-------ERMSYEECLQIQGKETWWITNLTPLRDSNSRIYRLIGTSFNI 786

Query: 546 TDSVRAERALT 556
           +D  + E+ L 
Sbjct: 787 SDRKQVEKTLQ 797



 Score = 41.1 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 86/302 (28%), Gaps = 48/302 (15%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + +      +IL  + V I + + +    + N+   ++          + + D+ +E 
Sbjct: 17  AQLQESEHRLKQILDAVPVGIFVSEADGKPDYVNQIGKQILGQGG---VESVTADQFIET 73

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNP-------RG 410
            R      ++  +   +  +    +      D   + +  +T+ V     P         
Sbjct: 74  YRIYQAGTDEF-YPRNRHPLLQALQGKRVRVDDMEIRHRDRTIPVEAWGAPIYDCQGTLT 132

Query: 411 GTIWMFENLTVQ------------------VDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
             I  F +++ +                   +   +           +  + + +     
Sbjct: 133 HAIAAFVDISERQPPEQVLADYNQKLEQQVAEQTEELRHSQARNQALLAAIPDMIFCSQA 192

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--- 509
           DG      PA                          +   +    D+   I  ++ +   
Sbjct: 193 DGTFIDFKPA------------PTIPSFAQAQDFLGKKPEDVFPLDIAQKIRAAYQESLV 240

Query: 510 --ERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
             E + L   L++ +     E  I+P  N + +    +++D  +AE  +  +   L +  
Sbjct: 241 SGEVQQLDYQLQIKNQWRDYEARIVPCSNQEILSIIRDISDRKQAEAQIAFQASLLDQVS 300

Query: 567 EI 568
             
Sbjct: 301 NA 302


>gi|237721041|ref|ZP_04551522.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
 gi|229449876|gb|EEO55667.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
          Length = 885

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 119/636 (18%), Positives = 250/636 (39%), Gaps = 43/636 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ + +   ++L       + +        W  +   +I +  + Y      E +    
Sbjct: 110 RDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNI-FHYLGYTGVLCEENVQNL- 167

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKIV--------RVLNS 285
           AI +  +L  EE ++  +       ++   E++S     N + + +         R   S
Sbjct: 168 AIEKYVELIVEEDRQSFMEWCRVNEKELNMESISYRVRLNGEIFYMRIQTYLREQRSDGS 227

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           F   G   +++      + +      ++N   +I     +  + F NR F     +    
Sbjct: 228 FNIEGYIQNITDIQHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF-----LYNHG 282

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---------N 396
           ++ N    +L  +  +A+        + W E    V     ++    H            
Sbjct: 283 ISENEDISQLKIYNVAADM----PTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAYE 338

Query: 397 GQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPD 453
           G   +V  T++    + W F  +++ ++  E +   L ++   TI++L  G+ V     D
Sbjct: 339 GTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINND 396

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R    N    +     +N               +    + D           +  E K 
Sbjct: 397 FRYIYRNREAYN-RDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEGKD 455

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G + +L    +      L +   +    ++T+    +R L    E    +D +K++F+
Sbjct: 456 RNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKAEMSDSLKSAFL 515

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL L+N+ILDL+ +
Sbjct: 516 ANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQLINEILDLSKI 572

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G ++ ++    L++L  EV  +   +  +  + +   S  +      D+ R+ Q+ S 
Sbjct: 573 ESGTIEFSFGPASLHNLCREVHDAHIFRTPQ-GVSLVYESSDESLMIETDKNRVFQVISN 631

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA+ F+ +GS +       +   +F V + G+ I  +    VF RF    +  Q  G
Sbjct: 632 LIGNAVKFTKEGS-ISYGYKLADNQIVFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--G 688

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 689 TGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 724



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 118/365 (32%), Gaps = 50/365 (13%)

Query: 109 DTDLLSFENWLKFHHY-IKLSKATEKLRKEGQSFDLVAET-----QNDCAIKIEGRVSGS 162
           + D  SF  W + +   + +   + ++R  G+ F +  +T     ++D +  IEG     
Sbjct: 178 EEDRQSFMEWCRVNEKELNMESISYRVRLNGEIFYMRIQTYLREQRSDGSFNIEGY---- 233

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
                I ++  I               N I+      ++    ++     G I++AN  +
Sbjct: 234 -----IQNITDIQ-----------HRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF 277

Query: 223 KKN---TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK--NFCETVSTLEHG----- 272
             N   +E E I   K    +  +  +E               NF     +  +      
Sbjct: 278 LYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAY 337

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI--FDQNR 326
               Y +            A D+S+ I    Q+    +     ++NL   I +   + + 
Sbjct: 338 EGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINNDF 397

Query: 327 YLQFHNRSF--VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              + NR     +L++ D        ++ +    + +  K  E +   T  + +    + 
Sbjct: 398 RYIYRNREAYNRDLYKNDP----VGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEG 453

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            + + +   L + + + V          + +  ++T    ++ +  +  +   E  D L 
Sbjct: 454 KDRNGNMIIL-DKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEK-AEMSDSLK 511

Query: 445 EGVAV 449
                
Sbjct: 512 SAFLA 516


>gi|254881605|ref|ZP_05254315.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642990|ref|ZP_07997624.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254834398|gb|EET14707.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385355|gb|EFV66300.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 781

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 129/645 (20%), Positives = 258/645 (40%), Gaps = 44/645 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFK--------------VLFDSLDFL--VWHRDQAGDILW 217
           +  ELA    + + L   +S  +               + DSL  +  V++ ++ G  + 
Sbjct: 10  VEQELASLREENRLLKEKLSALEHGSDNISFKEKYAVKILDSLPDMLTVFNHEETGIEVV 69

Query: 218 ANISYKKNTETEGIVFQKAIGES-RKLFKEE----IKKRMISSSALEKNFCETVSTLEHG 272
           +N    + T   G+  +   G S R++  +E    I   ++      +          +G
Sbjct: 70  SN----EETNHVGVSNETFKGMSMREMVPKEAYHNIHNNLLKVITTGRGSTAHHELDVNG 125

Query: 273 NNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
            +  Y+  +  L+      +  D+S+ +     L     +L  ++ +I     +  L + 
Sbjct: 126 EHHYYENRIFPLDDEYVLIMCRDISERVATQQNLEIFKRVLDKVSDSILAVSADGTLVYA 185

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           NR F+E + +    L T    D  L    +  ++ ++   +         Y++  T    
Sbjct: 186 NRQFIEEYGVKEE-LGTQKVYD--LSVSLNTKEIFDKRVQEIRDNGGNFAYRAKYTRVGE 242

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             L   Q    ++  N     IW F +++T  +    +   L  +    ++++   + V 
Sbjct: 243 TKLRVHQVSAFMIQ-NQGEEMIWFFTQDITDVIKNRDELRELNYLMDAILNNIPVYLFVK 301

Query: 451 GP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            P  D R    N AF S  K   ++    T         +      D  +L        +
Sbjct: 302 DPEDDFRYLYWNKAFASHSKIPASKALGHTDFEVFPEHENAEKFHRDDLELIRT-RERME 360

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKAD 566
            +   +  T E      L+ +++PL       +    ++T+    E+ L +      ++D
Sbjct: 361 MQETYVTATGETRIVQTLK-TLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSD 419

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K +F+ ++S+E+R+PL  I+GF+ L+    +      +  Y + I+ +S ILL L+ND
Sbjct: 420 RLKTAFLANMSHEIRTPLNAIVGFSRLM---TIADNAEDEKLYSDIINQNSEILLQLIND 476

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDLA ++AG ++     + L +L   V +    ++    + + + +         D+ R
Sbjct: 477 ILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRVQT-GVVLILDNKDTSLIINEDQNR 535

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+ + +++NA+ F+ KG  +            F VK+ G  I E+  K +F RFV   
Sbjct: 536 IMQVVTNLITNAIKFTFKGE-IRFGFEVREEYIDFYVKDTGMGISEEKIKMIFERFVKLN 594

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              Q  G GLGL+I    +   GG ++  S     +T    IP K
Sbjct: 595 TFVQ--GTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIPYK 637


>gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1480

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 116/512 (22%), Positives = 207/512 (40%), Gaps = 39/512 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S+     + L      L    + +A+ D    + + NR F E+       L     N  L
Sbjct: 429 SQAQAALNNLEDQKFALDQHAI-VAVTDLKGNITYINRRFSEISGYQEEELIGK--NHRL 485

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSNP----R 409
           L   R           +++   ++SV    E           +G    V  T  P     
Sbjct: 486 LNSGRH---------PRSFFIQMYSVISKGEVWNAEICNRAKDGSYYWVDTTIVPFTNAE 536

Query: 410 G---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G     I +  ++T +   E K    + +    ++    G+ V   DG+I   N ++ +L
Sbjct: 537 GKPESYIAIRTDITTRKLAEIKTKEALSLMHSMLESTDNGILVTSLDGKILQFNESYAAL 596

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           W  E                  +  +     +  A++ +  D E   +   LEL    + 
Sbjct: 597 WDIEVKTGLDHREFE--LKNRDKILDYQGVIERIASLYSEPDFEGFDI---LELTDGRIY 651

Query: 527 EYSIIPLPNAQTM----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           E   +P+ + + +     +F +++  ++ +  L    E    A + K+ F+  +S+E+R+
Sbjct: 652 ERVSLPMKSDEGLLGRVWSFHDISKRMKTQNELILAKEEADLAVKAKSEFLASMSHEIRT 711

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  ++G   LL  ++   L   Q + V    +S+  LL L+NDILD + +DAG ++L  
Sbjct: 712 PMNGVLGMLGLLNNTQ---LTDYQKRRVSIAQSSAKSLLTLINDILDYSKIDAGKLELEN 768

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDF 701
               L  +L E  + +A +    ++ + +   G +      D  RL Q  + ++ NA+ F
Sbjct: 769 LDFNLRGMLGEFAEGMAFQAQNKSLELVLDLKGIEHSMVTGDPSRLRQALTNLVGNAIKF 828

Query: 702 SSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           +SKG  +I    RD+GD   F   + + G  I  D   S+F+ F        R   G GL
Sbjct: 829 TSKGEVLIEAGLRDSGDEWCFWCVITDTGIGIAADKISSLFDSFSQVDASTTRKYGGTGL 888

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+IV+    L GG VSI+S     T +   I
Sbjct: 889 GLAIVQKICQLMGGDVSITSEVGKGTRVEFTI 920


>gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
 gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
          Length = 545

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 156/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++  +           H+ 
Sbjct: 192 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYINLVNRSYKETF-----------HVT 238

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 239 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLG---IERKHFEVYGAPIIGT 295

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 296 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMDN 351

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  +  L+ D+LDL+ ++    +LN  T+ +  +L ++   +  K
Sbjct: 352 -KKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFRLNMGTVDMKGILEDIHMVLDNK 410

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I ++V    K  S + D  RL QIF  +++NA+ ++  G  V ++   D  +   
Sbjct: 411 AGEKEISLQVNG-LKRVSVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELLEDKYNAYI 469

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 470 KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTITVDSEVG 529

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 530 EGTTFTVVLPK 540



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 167 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 224

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E + +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 225 NLVNRSYKETFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 270

Query: 389 KDTWHLPNG---QTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP G   +   V     I T++   G + +F ++T    LE      +
Sbjct: 271 RKQMLLPLGIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 323


>gi|222149462|ref|YP_002550419.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium vitis S4]
 gi|221736445|gb|ACM37408.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium vitis S4]
          Length = 1282

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 130/731 (17%), Positives = 272/731 (37%), Gaps = 90/731 (12%)

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEG-RVSGSCAFLRILSLDGIYSELAETTLKCKK 187
           +       E +         N   I   G R+      L    +    +           
Sbjct: 246 QFLAASIDEPEP--CQIAMPNGRVISARGNRLENGQFLLLYTDVTEAQT----------- 292

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQKAIGESRK 242
                ++++   +++   V+ RD    +++AN +Y++    +     G+   +      +
Sbjct: 293 YERESTLYRAALENVPEPVFLRDGDRRLVFANAAYEQMLGGDRTRFYGLREDEMFPAEGE 352

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVLNSFGE---AGIAIDVS- 296
             ++E  + + +  A E    E +  + +G+       + R+    G     G   DVS 
Sbjct: 353 ALRQENIEVLETGCATE---REQLIIMPNGDTVPLLTSLKRIETKDGAPYIVGTLADVSL 409

Query: 297 ---KEITVNDQLTHTYE-------ILHNLTVAIAIFDQNRYLQFHNRSFVEL--WEIDLA 344
               E  + +   H  +       IL  + V + I D ++ L F N     +  W  D A
Sbjct: 410 LKIGERQLREAKAHAEKLYDDIEAILRTMPVGVIILDADQSLSFSNLMARNMVCWPEDQA 469

Query: 345 FLATN--------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLP 395
              T+         +N   LE    A+  P+ ++ ++         ++    + T   L 
Sbjct: 470 MTGTSFADYLRHAHANGWPLETGDDASLNPDSIDPESRIAAYSLELRTLTAARQTEVTLS 529

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQV-------DLETKYNTLVKVQGETIDHLSEGVA 448
           + + + +  +    G  +  F + T Q        +   +   + K+  E   H+++G+ 
Sbjct: 530 DRRHIVITASPLDDGQIMLTFSDYTEQRLREREIDEARARLQDVGKLLEEATQHMAQGLC 589

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           V   D RI   N     +     + +  G   R +   C+   +  D    F   + S  
Sbjct: 590 VIQTD-RILYRNDKLAEILNVSPHLVRTGADWRQLFDYCAERGDFGDNPTAFLDRMRSRM 648

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
               S    ++    +      I     + +    + +++ + E  LT        AD+ 
Sbjct: 649 SADTSASVVVQRRDGAWRSIEAIVSAEDRWLFVISDASEAKQREAELTTLAAQAEAADKA 708

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P++ ++G T+LL +S   +L+++Q  +V+ I  S   LL ++NDI+
Sbjct: 709 KSRFLANMSHEIRTPMSGVLGMTELLLSS---NLDARQKTFVDVIVKSGRSLLTIINDII 765

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + +D G + L  +       + +V   +A +  E ++ I V   G+L   +  D  R 
Sbjct: 766 DFSKIDDGSLSLRSAPFDPLAAVEDVVTLMAGRAAEKDVDILVRGQGRLTHMLAGDAGRF 825

Query: 688 LQIFSKILSNAMDFSSKGST-VILKAARDNGD--------------------------FI 720
            QI + +L  A+  + +G   V L   ++  D                           +
Sbjct: 826 RQILTNLLGEAIRATDRGHVLVDLGLRQEEPDLDVTLQSHGDPISETNAEVSDRARAWLV 885

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +++ G  +  + C   F +F    +     R G GLG SI    ++L GG + + S+ 
Sbjct: 886 LRIEDTGHGMTPEQCLMAFTKFSQMNDGALHHRDGAGLGFSIAGGLVDLFGGTIGVESAP 945

Query: 779 EGVTTINCRIP 789
               T+   +P
Sbjct: 946 GRGATVTVNLP 956



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 143/426 (33%), Gaps = 59/426 (13%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ---------KAIGESRKL 243
           + + +L D +   V   D   DI++ N S+ +      +  +           IG +   
Sbjct: 178 ADYAMLLDLIPLGVLLLDSQLDIVYFNTSFSRMLGETTVELKFGMNFQAVLDVIGGAGWD 237

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG----IAIDVSKEI 299
              E       ++++++     ++          +++    +  E G    +  DV++  
Sbjct: 238 GSGEDTSGQFLAASIDEPEPCQIAMPNG------RVISARGNRLENGQFLLLYTDVTEAQ 291

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           T   + T     L N+   + + D +R L F N ++ ++   D                L
Sbjct: 292 TYERESTLYRAALENVPEPVFLRDGDRRLVFANAAYEQMLGGDRTRFYG----------L 341

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVT----SNPRGG-- 411
           R     P +   +  ++    V ++      +    +PNG T+ ++ +        G   
Sbjct: 342 REDEMFPAEG--EALRQENIEVLETGCATEREQLIIMPNGDTVPLLTSLKRIETKDGAPY 399

Query: 412 TIWMFENLTVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            +    ++++    E +          L       +  +  GV +   D  +  SN   R
Sbjct: 400 IVGTLADVSLLKIGERQLREAKAHAEKLYDDIEAILRTMPVGVIILDADQSLSFSNLMAR 459

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--- 521
           ++    E++   GT   +            +  D  +    S D E +    +LEL    
Sbjct: 460 NMVCWPEDQAMTGTSFADYLRHAHANGWPLETGDDASLNPDSIDPESRIAAYSLELRTLT 519

Query: 522 ----------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
                         +  +  PL + Q MLTF + T+    ER + E    L+   ++   
Sbjct: 520 AARQTEVTLSDRRHIVITASPLDDGQIMLTFSDYTEQRLREREIDEARARLQDVGKLLEE 579

Query: 572 FVQHVS 577
             QH++
Sbjct: 580 ATQHMA 585


>gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 995

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 174/381 (45%), Gaps = 16/381 (4%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E+  +Q + E K       Q   ID L  G+AV   + +I+L N  F  L++ +    
Sbjct: 119 IMEDDILQKEQERKLMNSYAFQRSLIDRLHSGIAVTDCNKKIRLLNRKFYELFQLKG--- 175

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               HI   A+     +++    + F        ++R      +++ +   L Y+  PL 
Sbjct: 176 EVDCHIGMQASDLHYLFDKEINKNKFEN-----TEKRTRTTKEIKIDTGRTLRYNCFPLN 230

Query: 535 NA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                   +  F ++T+  + ER + +  E   K +  K+SF+  +S+ELR+PL  I+GF
Sbjct: 231 EENDFVGYLWEFEDITEQKKMERVIIQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGF 290

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL+  +  SLN +Q  + + I +  + LL+L+NDILD++ ++ G +K++   + L  +
Sbjct: 291 AQLLEMDE--SLNEQQRDFAQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTV 348

Query: 651 LNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + E    +     + NI I    D  +    +AD  RL QI   +L NA+ ++ +   VI
Sbjct: 349 IKECINIVQPLAKKKNISIYSQLDQWEDMIVLADPIRLKQILLNLLDNAIKYNQENGKVI 408

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           +            + + G     +    VF  F       +  G G+GLS+V+  ++L G
Sbjct: 409 VFCRLQENKQYIHIVDTGVGFSVEEYTKVFVPFYRIE-STKEEGTGIGLSLVKQLVHLMG 467

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G ++++S+    +     +P 
Sbjct: 468 GEINVTSNKGTGSEFCFSLPL 488



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 20/139 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA---FLATNPSN 352
            +E  + +       ++  L   IA+ D N+ ++  NR F EL+++       +    S+
Sbjct: 128 EQERKLMNSYAFQRSLIDRLHSGIAVTDCNKKIRLLNRKFYELFQLKGEVDCHIGMQASD 187

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NP 408
              L             + +  K    +  K + T K+   +  G+TL          N 
Sbjct: 188 LHYL------------FDKEINKNKFENTEKRTRTTKEI-KIDTGRTLRYNCFPLNEEND 234

Query: 409 RGGTIWMFENLTVQVDLET 427
             G +W FE++T Q  +E 
Sbjct: 235 FVGYLWEFEDITEQKKMER 253


>gi|254182521|ref|ZP_04889115.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1655]
 gi|184213056|gb|EDU10099.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1655]
          Length = 818

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 171 GARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 226

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 227 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 285

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 286 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 341

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 342 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 401

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 402 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 461

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 462 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 518

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 519 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 578

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 579 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 638

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 639 LHGGKVEAASAGKNRGTTFAITLPA 663


>gi|315918906|ref|ZP_07915146.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692781|gb|EFS29616.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 873

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 120/636 (18%), Positives = 247/636 (38%), Gaps = 43/636 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ + +   ++L       + +        W  +   ++ +  + Y      E +    
Sbjct: 110 RDITQRSNVKRRLEQANLTLRAIQKVAQIGQWAYNTNKNV-FHYLGYTGVLCEESVQNL- 167

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLE--HGNNKSYKIVRVLNSFGEAG- 290
           AI +  +L  EE ++  I       ++   E++S     +G     +I   L      G 
Sbjct: 168 AIEKYVELIVEEDRQSFIEWCHVNEKELNMESISYRVRLNGEIFYMRIQTYLRKECSDGS 227

Query: 291 -----IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
                   +++      + +      ++N   +I     +  + F NR F+    I  + 
Sbjct: 228 FNIEGYIQNITDIQHRRNDINTLTHAINNAKESIFAARPDGTIIFANRRFLHNHGIPES- 286

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---------N 396
                 +   L+       +P Q   + W E    V     ++    H            
Sbjct: 287 -----EDISQLKIYNVTADMPTQ---EAWDERCKDVIHGGSSNFVAHHPSKINKGILAYE 338

Query: 397 GQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPD 453
           G   +V  T++    + W F  +++ ++  E +   L ++   TI++L  G+ V     D
Sbjct: 339 GTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINND 396

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R    N    +     +N               +    + D     +     +  E K 
Sbjct: 397 FRYIYRNREAYN-RDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATSGKGMHWTVEGKD 455

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G L +L    +      L +   +    +VT+    +R L    E    +D +K++F+
Sbjct: 456 RNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKRELLSSKEKAEMSDSLKSAFL 515

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL L+N+ILDL+ +
Sbjct: 516 ANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQLINEILDLSKI 572

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G ++ ++    L++L  EV  +   +  +  + +      +      D+ R+ Q+ S 
Sbjct: 573 ESGTIEFSFGPASLHNLCREVYDAHIFRTPQ-GVSLVYEPSDESLMIETDKNRVFQVISN 631

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA+ F+ +GS +       +   +F V + G+ I  +    VF RF    +  Q  G
Sbjct: 632 LIGNAVKFTKEGS-ISYGYKLVDNQIVFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--G 688

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI +S +   GG +S+SS     TT    +P
Sbjct: 689 TGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 724


>gi|91202234|emb|CAJ75294.1| similar to histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 395

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 155/319 (48%), Gaps = 17/319 (5%)

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           +  +S  W     I+ S  D+ KS+   +E  +D  L     P+     + + +      
Sbjct: 69  HLKDSASWRHIPVIMISAIDDMKSIIRCIEKGADDYLTKPYNPVLLKARIGSCLMKKRLH 128

Query: 550 RAERA---------------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             E                 L + N AL KA  +K+ F+  +S+ELR+PL  IIGF ++L
Sbjct: 129 DQEEQYRHLLEKKVQEKTSDLQKTNIALEKAYRLKSEFLATMSHELRTPLNAIIGFAEVL 188

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +N +Q +YV+ I +S   LLN++N++LD++ ++AG ++L Y  I + + +++V
Sbjct: 189 KDGLVGPINDEQREYVDDIYSSGKHLLNMINNVLDISKIEAGKLELKYEEICVKETIDDV 248

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +++   ++ NI IK      + +FV D+ +L QI   +LSNA+ F+ K   V +    
Sbjct: 249 LNTVSGIANKKNITIKNTIQSDIPTFVVDQLKLKQILFNLLSNAIKFTPKNGNVCIDTTL 308

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
            +    F++ + G  I ++  + +F  F            G GL L++ +  + LHGG +
Sbjct: 309 KDLYVQFAIADTGIGIKQEDIEKIFEAFSQVDSSLARNYEGAGLSLALTKRLVELHGGEI 368

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S     +T    +P +
Sbjct: 369 WVESFYGKGSTFTFILPLR 387


>gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing
           [Symbiobacterium thermophilum IAM 14863]
          Length = 444

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 151/365 (41%), Gaps = 24/365 (6%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +           + H+++G+ +     RI L NPA   +     +      H+       
Sbjct: 97  RLLAEKAQMDLILQHMADGILLLDERRRIVLVNPAAERMLGVSRHEALGRDHLE------ 150

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
               +  +  +  A ++ +   E  +L+       + +LE  +   P+       V + D
Sbjct: 151 --VTHHFELDERLARVLATGRPE--ALEIRRAHPQEQILEARLALAPSGGERGVLVMLRD 206

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R+ +            ++++  FV +V++ELR+PLT+I GF + L    L        
Sbjct: 207 ITRSRQL-----------EQMRTEFVANVTHELRTPLTSIQGFAETLLEGALDE-PETAR 254

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +VE +   S  L  L++++LDL+ V++G  ++     V  +L+       A K     +
Sbjct: 255 HFVEIMLRESRHLGALIDELLDLSRVESGKFRMQRRPTVPAELIAATAARFAQKAERAGV 314

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++   +   L     D  RL+Q+ S ++ NA+ ++  G  + L A RD      +V + G
Sbjct: 315 QLVTEAPDGLPLINGDPDRLVQVLSNLVENAIKYTPAGGRITLSARRDGDGVRIAVADTG 374

Query: 728 SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           + IP+     +F RF            G GLGL+I +  +  HGG + + S     +T  
Sbjct: 375 AGIPQADLGRIFERFYRVDKARSRATGGTGLGLAIAKHIVEAHGGTIGVESEVGKGSTFT 434

Query: 786 CRIPS 790
             +P+
Sbjct: 435 VILPA 439



 Score = 42.6 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 15/135 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   +  +      IL ++   I + D+ R +   N +   +  +          + E+
Sbjct: 93  ERLDRLLAEKAQMDLILQHMADGILLLDERRRIVLVNPAAERMLGVSRHEALGR-DHLEV 151

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GT 412
                   +L      +          +    H      P  Q L   +   P G   G 
Sbjct: 152 THHFELDERLA-----RVLATGRPEALEIRRAH------PQEQILEARLALAPSGGERGV 200

Query: 413 IWMFENLTVQVDLET 427
           + M  ++T    LE 
Sbjct: 201 LVMLRDITRSRQLEQ 215


>gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1]
 gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1156

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 204/491 (41%), Gaps = 41/491 (8%)

Query: 317  VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             A+  +D      + + S+ E+       L   PS         + +K       +  ++
Sbjct: 543  TAVLDWDFRDNSMYISPSWKEMLGFRDDELPNAPS--SWFRRAHTEDKKTILAMLREHEK 600

Query: 377  NIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-------PRGGTIWMFENLTVQVDLETKY 429
            N    ++S+   K      +G  + V+  +         +   I    ++T + + + KY
Sbjct: 601  NKIRFFESNHRLKH----KDGHWVWVLGRAQILFDENGKKVRMIGTHTDITKEKESQIKY 656

Query: 430  NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               V+     ++ + +G+     +G +   N     L+   ++ +  G HI  I      
Sbjct: 657  FQQVQ----IMEQIHDGIVTTDLEGNVTSWNKGAEELFGYSQSEI-IGKHISLI------ 705

Query: 490  YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPN-----AQTML 540
             Y + D   +   I  S + E    QG L  ++ S     +  S+  L +     A  + 
Sbjct: 706  -YRKKDIPGIKERIRASLE-ETGLYQGDLTFITKSKKIIPVSLSLSLLKDEHGNVAGRIG 763

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
               ++T   + E++L +      ++ + K+ F+ ++S+E+R+PL+ I+GF DLLK     
Sbjct: 764  INQDITQRKKDEKSLLKAKRKAEESAKSKSEFLANMSHEIRTPLSAILGFIDLLKKE--- 820

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            ++  K  +YV+ I  SS  LL ++ DILD + +++G ++++            +      
Sbjct: 821  NIEKKAKEYVDIIDTSSKGLLKIIEDILDFSKIESGKLEIDKIDFSPKIEFETIIHLFLA 880

Query: 661  KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E +I + +I D  L  +   D  R+ QI S +LSNA+ F+ +G  + +     NG  
Sbjct: 881  KCAEKDIALTLILDESLPETIHTDPLRIKQIISNLLSNAIKFTDQGKKITVTINYKNGFL 940

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
              SVK+ G  I ++    +F  F        R   G GLGL+I    + + GG + + S 
Sbjct: 941  NVSVKDEGKGIAKEKLSHIFESFAQEDSSTTREYGGTGLGLTISYRLVKILGGELHVKSK 1000

Query: 778  DEGVTTINCRI 788
                +     I
Sbjct: 1001 VGAGSEFYFSI 1011



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 76/259 (29%), Gaps = 38/259 (14%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK---------------NFCETV 266
           ++ N+      +++ +G                +   +K                F E+ 
Sbjct: 550 FRDNSMYISPSWKEMLGFRDDELPNAPSSWFRRAHTEDKKTILAMLREHEKNKIRFFESN 609

Query: 267 STLEHGNNKSYKIVRVLN--------SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
             L+H +     ++                 G   D++KE     +     +I+  +   
Sbjct: 610 HRLKHKDGHWVWVLGRAQILFDENGKKVRMIGTHTDITKEKESQIKYFQQVQIMEQIHDG 669

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           I   D    +   N+   EL+    + +         +  +     +P            
Sbjct: 670 IVTTDLEGNVTSWNKGAEELFGYSQSEIIGKH-----ISLIYRKKDIPGIKERIRASLEE 724

Query: 379 FSVYKSSETH--KDTWHLPNGQTLHVIVTSNPRG-GTIWMFENLTVQVDLE-------TK 428
             +Y+   T   K    +P   +L ++   +    G I + +++T +   E        K
Sbjct: 725 TGLYQGDLTFITKSKKIIPVSLSLSLLKDEHGNVAGRIGINQDITQRKKDEKSLLKAKRK 784

Query: 429 YNTLVKVQGETIDHLSEGV 447
                K + E + ++S  +
Sbjct: 785 AEESAKSKSEFLANMSHEI 803


>gi|150395865|ref|YP_001326332.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150027380|gb|ABR59497.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 772

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 228/551 (41%), Gaps = 68/551 (12%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           +A  A D       ++        L      +  FD +    F +RS  E+  +      
Sbjct: 242 QAKRARDADAIFAESN--LRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGM------ 293

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLH--- 401
             P +  +L F  +A  +   ++ +       ++ + SE   D        +G  +    
Sbjct: 294 --PGDASVLSFGDAARLM--HVDDRGIYRVARAIARGSERQIDQVFRMRHADGHYVWLRA 349

Query: 402 ---VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
              VI T + R   I +  ++T Q  L  +Y    +   + I+  SE   ++    R+ +
Sbjct: 350 RAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVM 409

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N  F+  W+  ++ L PGT    + A  +R         +    I   D    S    +
Sbjct: 410 CNTHFQQAWQLPDHVLVPGTERTIVQAAAAR--------PVVERRIADPDRSNHSQTSEV 461

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE--------------------- 557
           +L  +  L+ +     +   +    ++T   R +  L E                     
Sbjct: 462 QLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRITLEQ 521

Query: 558 --------------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
                         + E    A+  K+ F+ ++S+ELR+PL  I+GF+++L+    G L 
Sbjct: 522 QKAELSVANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLG 581

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + K  +Y   I  S   LLN++NDILD++ ++AG M++    I L  L+ E  +      
Sbjct: 582 SEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPA 641

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + NIR+       L +  ADR+ + Q+   +LSNA+ F+++G  + L+A +  G    +
Sbjct: 642 EQKNIRVVQQVSSGL-TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLT 700

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + ++G  IP D  + +   F  V + +   + G GLGL+I  S   LHGG + I S++  
Sbjct: 701 IADSGIGIPRDALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGSIKIHSTENV 760

Query: 781 VTTINCRIPSK 791
            T I+ RIP +
Sbjct: 761 GTIISVRIPDR 771



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 94/288 (32%), Gaps = 29/288 (10%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +    +  A+       L    ++ +         +W  D     L+ + S  +     G
Sbjct: 241 IQAKRARDADAIFAESNLRVETALSRGRCG-----LWDFDLDNRRLFWSRSMYEMLGMPG 295

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-----EHGNNKSYK-----IV 280
                + G++ +L   + +     + A+ +     +  +       G+    +     I 
Sbjct: 296 DASVLSFGDAARLMHVDDRGIYRVARAIARGSERQIDQVFRMRHADGHYVWLRARAQVIR 355

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFV 336
            V       GIA+DV+++  +  +     + L +     + A  ++D++  L   N  F 
Sbjct: 356 TVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHFQ 415

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           + W++           D +L        +         +  I    +S+ +      L +
Sbjct: 416 QAWQLP----------DHVLVPGTERTIVQAAAARPVVERRIADPDRSNHSQTSEVQLAD 465

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            + L +       GG + +  ++T+    + +     +    TI  LS
Sbjct: 466 ERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLS 513


>gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 757

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 118/629 (18%), Positives = 228/629 (36%), Gaps = 58/629 (9%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV--------------FQKAIGESRK 242
             F+     +   D  G I+ AN  ++  +  +G                    +     
Sbjct: 4   AAFELAPCGLVVCDNDGTIVAANRYFRAMSGYDGGPKTFGRCLTRPSQFILSAKLLPELN 63

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L  E  +  +  +     +    ++    G++  Y +             ++  K++T  
Sbjct: 64  LTGEASEIALSLTGPDGDSVPILLNARRDGDHFHYAVFPAKERREYETEYLNAKKKLTQY 123

Query: 303 DQLTHTYEILHNLTV--AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
                  E L +L       +        + +     ++  D       P   E +    
Sbjct: 124 SDYLRMAERLAHLGHWHGNMVT----KETYWSPETYAIFGCDPETFT--PRFGETMALYH 177

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-------NGQTLHVIVT----SNPR 409
             +           +E I ++ +++      +          +G+  H+        +  
Sbjct: 178 PDD-----------REEIRAIVEAAIAGNGEFSFRARCIRHDSGEIRHIETNGVCERDES 226

Query: 410 GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G  I +F    +L+  +  +              D  ++ ++VFG DG I+  +PA   L
Sbjct: 227 GKAIGLFGVVHDLSDILSAQEATEASEARYRLLADSSNDIISVFGLDGAIEYLSPAVEKL 286

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA----AIITSFDDERKSLQGTLELLS 522
                  L+ G ++R+I          +           + +       +  QG +  L 
Sbjct: 287 LGFTPAELT-GRNVRDIVLPEDYPVTRAAFASYVRGGDWSAVPRVQYRARHKQGHIVWLE 345

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            S           A+      ++T+    E AL +       A E K+ F+  +S+ELR+
Sbjct: 346 ASPRAMLGPDGKIAKLQDVVRDITERKAVEAALEDAMVDANAAAEAKSQFLATMSHELRT 405

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT+IIGF+ LL+       + +  +Y + I  +S  LL L+NDILD + ++AG ++L+ 
Sbjct: 406 PLTSIIGFSALLREVV---ESEEPRRYSQRIWTASQGLLALINDILDHSKLEAGQLELDL 462

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           +    N+L+ EV   +  + H   + + V +D  +   + D  R+ QI   +  NA+ F+
Sbjct: 463 APCSANELMQEVADLLEVQAHAKGLFLTVDTDDDMPLMLLDEVRMRQILINLAGNAVKFT 522

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             G  V +           +V + G  I  +  K +F RF    H     G GLGL I +
Sbjct: 523 GDGG-VTIALHWRGDRLQVTVTDTGPGISPEGHKRLFKRFSQVDHTTN--GTGLGLMICK 579

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + L GG + + SS    +     IP +
Sbjct: 580 QLVELMGGRIGVESSPGNGSMFWFDIPVQ 608


>gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 499

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 167/386 (43%), Gaps = 25/386 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + +++ K +    +    ++ + + V    P+G     NP F    K     +    
Sbjct: 100 VEKRKEMQEKLSRERSMLSGLLNSIPDAVFFKDPEGTYLGCNPVFCEFVKRPTEGVVGKK 159

Query: 479 HIRNIAATCSRYYNESD------GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +    +   + + N  D      G  +      +  D RK L  T++            P
Sbjct: 160 NPDFYSKEVASFLNAEDKEIFETGKAIIRERWATRPDGRKVLLQTVK-----------AP 208

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           L +        +    ++T+  RAE AL +       A + K+ F+  VS+EL++PL +I
Sbjct: 209 LYDETGNFIGLVGVSRDITERQRAEDALLKVR-IAEDASQAKSEFIATVSHELKTPLNSI 267

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF+DLL     G L+ +Q++Y+  IS S   LL  ++DILDL+ ++AG   L       
Sbjct: 268 IGFSDLLLEDSSGKLSERQARYINNISISGKHLLQFIDDILDLSKIEAGKTFLEPENFEF 327

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             +  ++++    ++    + +    D  + SF AD+    QI   ++SNA+ F+ +  +
Sbjct: 328 TKIFKDIEKVFRPRVSGKKLSLNFEVDSGIKSFYADKMMFKQILYNLISNAVKFTPEEGS 387

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           + + AA+        VK+ G  I  +   S F  F       + +    GLGL +V+ F+
Sbjct: 388 ITVSAAKIGNMVRICVKDTGIGISREDMDSFFQPFKQPDSFFKRRYERTGLGLFLVKRFV 447

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            +HGG++   S     ++    +P K
Sbjct: 448 EMHGGNIQAESVPGEGSSFIIELPLK 473



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 16/164 (9%)

Query: 159 VSGSCAFLR-ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
            +G   ++  + S++ + +E+ +     +KLS   S+   L +S+   V+ +D  G  L 
Sbjct: 80  AAGLLKWVSTVASVEKLKAEVEKRKEMQEKLSRERSMLSGLLNSIPDAVFFKDPEGTYLG 139

Query: 218 ANISYKKNT--ETEGIVFQKAIG----ESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            N  + +     TEG+V +K       E       E K+   +  A+ +    T      
Sbjct: 140 CNPVFCEFVKRPTEGVVGKKNPDFYSKEVASFLNAEDKEIFETGKAIIRERWATRP---D 196

Query: 272 GNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTY 309
           G     + V+        N  G  G++ D+++     D L    
Sbjct: 197 GRKVLLQTVKAPLYDETGNFIGLVGVSRDITERQRAEDALLKVR 240



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 59/171 (34%), Gaps = 21/171 (12%)

Query: 294 DVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +V K   + ++L+    +L    +++  A+   D        N  F E  +     +   
Sbjct: 99  EVEKRKEMQEKLSRERSMLSGLLNSIPDAVFFKDPEGTYLGCNPVFCEFVKRPTEGVVGK 158

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            + D   + + S     ++  ++T K  I   + +          P+G+ + +     P 
Sbjct: 159 KNPDFYSKEVASFLNAEDKEIFETGKAIIRERWAT---------RPDGRKVLLQTVKAPL 209

Query: 410 -------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                   G + +  ++T +   E      V++  +     SE +A    +
Sbjct: 210 YDETGNFIGLVGVSRDITERQRAEDALLK-VRIAEDASQAKSEFIATVSHE 259


>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1431

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 130/658 (19%), Positives = 242/658 (36%), Gaps = 62/658 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIV 232
           + +E A+      +          + ++L  +V+ ++         N + ++ T     +
Sbjct: 339 LAAEAADRHKAETETKRAEQFLDSVIENLPIMVYVKEAEQLRFTRWNRAAEELTGFSRDL 398

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALE-KNFCETVSTLEHGNNKSYKIVRVL-------- 283
                G      +E  +  +    AL      E  S   H  ++  +++R          
Sbjct: 399 ILGRTGHDFFRKEEADRFTLHDREALRSGRLIEVASEEIHTQHRGVRLLRTKKLPVMDEQ 458

Query: 284 -NSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIF-DQNRYLQFHNRSFVE 337
                  GIA D++     E  +++      E+  +   AI I    N      N + V+
Sbjct: 459 GRPRFLLGIAEDITDRSAHESILHESEEKYRELFESSRDAIMILASPNWNFTACNPATVQ 518

Query: 338 LWEIDLA--FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--- 392
           L+    A  F +  P      +         E+   K  K  +  +     +H   W   
Sbjct: 519 LFGARDAEHFTSLGP-----WDVSPEHQPDGEESMVKAPK--MIGMALQEGSHSFEWLHK 571

Query: 393 ------HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                  L + Q   + +      G      ++T Q   E         Q   +D+    
Sbjct: 572 RVGGPAFLASVQLTRITLKGT--TGLQATVRDITEQRRSEATLQAYSTFQKAMLDNAGHA 629

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRL------SPGTHIRNIAATCSRYYNE-----SD 495
           +    PDG I++ NPA  +L     + L           +  + A   ++  E       
Sbjct: 630 IISCKPDGMIQVFNPAAEALLGYSADELVGKQTPGIFHDLDEVVARARQFSAELGTTIEP 689

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVR 550
           G+D+F                  +  +   +  ++  L  A   +T       ++T    
Sbjct: 690 GFDVFVEKCRRNLPNEHEWAYVCKDGTRKTVLLNVTALREADGRITGYLGIATDITPLKL 749

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             + L    EA   A+  K+ F+ ++S+E+R+PL  ++G T+LL ++   SL++KQ   +
Sbjct: 750 TAQELVSAKEAAEAANVAKSRFLANMSHEIRTPLNGVLGMTELLLST---SLSAKQQSLL 806

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  S   LL ++NDILD + ++AG ++L      L  ++ E  +  A       + + 
Sbjct: 807 ETVRRSGVALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSAGNKKLELT 866

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKN 725
                 +  S V D  RL QI   ++ NA+ F+++G  TV    A  + D       V++
Sbjct: 867 YFIPADVPDSLVGDAVRLRQILLNLIGNAIKFTAQGEVTVAFALAEQHADTLTLACRVRD 926

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            G  IP+     +F  F        RR  G GLGL+IV+  + L GG V + S+    
Sbjct: 927 TGIGIPDAAQAQLFTAFTQADGSTTRRFGGTGLGLAIVKQLVQLMGGEVGLVSAPGQG 984


>gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
 gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
          Length = 470

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 164/375 (43%), Gaps = 28/375 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++ ++           H+ 
Sbjct: 117 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYISLVNRSYKEIF-----------HVT 163

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 164 DEEYLDRLYYEAFLHAEIIELVEEIFMTEVKVRKQMLLSLG---IERKHFEVYGAPIIGT 220

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L     G+
Sbjct: 221 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLD---GA 273

Query: 602 LNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           + ++Q    ++  I   S  +  L+ D+LDL+ ++    KLN  T+ + +LL E+K  + 
Sbjct: 274 MENQQFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLGEIKMVLE 333

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E  I ++V    +  S + D  RL QIF  +++NA+ ++  G TV +    D  + 
Sbjct: 334 NKSQEKEISLQVDV-LRHVSVIGDPSRLKQIFINLVNNAIVYTPAGGTVSVALLEDEHNA 392

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I  +    +F RF            G GLGLSIV+  +  H G +++ S+
Sbjct: 393 YIKVSDTGIGISTEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTITVDST 452

Query: 778 DEGVTTINCRIPSKE 792
               TT    +P  +
Sbjct: 453 VGEGTTFTVALPKAD 467



 Score = 45.3 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 57/160 (35%), Gaps = 20/160 (12%)

Query: 284 NSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+   NRS+ E
Sbjct: 99  DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 158

Query: 338 LWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           ++ +           +  L      L     + E       ++ +         H + + 
Sbjct: 159 IFHVTDEEYLDRLYYEAFLHAEIIELVEEIFMTEVKV----RKQMLLSLGIERKHFEVYG 214

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            P      +I T++   G + +F ++T    LE      +
Sbjct: 215 AP------IIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 248


>gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1039

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 155/835 (18%), Positives = 297/835 (35%), Gaps = 79/835 (9%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPI-ILLIRQRNSLAKKVNETYSFLSEICDQLSKYHS 74
           +  +FS  +A    I  + L  ++   I L+      AK+       L ++    +K+  
Sbjct: 72  LEPVFSLSVASLDNIRRLGLFVLVTTFITLLNSELRTAKQ--HLQMSLQKLKVSEAKFRR 129

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE-NW---LKFHHYIKLSKA 130
           L+  N    IV +      E      + +   Q   DLL+    W   +   +    + A
Sbjct: 130 LVESNIIGIIVANMDGAIAEANDAFLRMVGYSQE--DLLAGRVRWRDMIPPKYIEANNSA 187

Query: 131 TEKLRKEG--QSFDLVAETQNDCAIKIEGRVSGSCAFLRIL--SLDGIYSELAETTLKCK 186
             +L+ +G  Q F+     ++   + I        A L      +     +L+E      
Sbjct: 188 IAELKAKGVCQPFENEYIRKDQNCVPI----LLGSALLENNSNDIISFVLDLSERKQVEL 243

Query: 187 KLSNHISVFKVLFDSLDFLVWH------------RDQAGD--ILWANISYKKNTETEGIV 232
            L      ++   +     +W              D+       +  ++   N   +   
Sbjct: 244 ALCQSEERYRAFLEQSSEGIWCIELEVPISPDCPEDEQIQHFYQYVYLAECNNVMAQMYG 303

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK-------------- 278
             +A         + +      + A  +NF  +   L    +                  
Sbjct: 304 CSRAEEIINARLGDFLIPSDPHNIAYLRNFIRSNYRLIDAESHEIDKQGNSKYFLNNLVG 363

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI----FDQNRYLQFHNRS 334
           IV         G   D+++       L    E L  +T A+ +     D  +  +F+N+ 
Sbjct: 364 IVENGLLVRAWGTQRDITERKQAEAALNQQEEQLRLITNAVPVQISYVDIQQLYRFNNKG 423

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-TWH 393
           + + + +  + +       E++      + LP      + +E     Y++   HKD T H
Sbjct: 424 YEDWFGLPASEIYGKH-IREIMGESVYQSILPYVEAVLSGEEV---TYETQLPHKDGTHH 479

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA---VF 450
             N   +          G + +  ++T+    E       K      + +   +    V 
Sbjct: 480 YINVSYVPQFSEQGKVEGFVALITDITLHKLAEAALKQSEKRLKTLTEKVR--IIPWEVN 537

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              G      P    +     +        +       R +         +  + +++ E
Sbjct: 538 ATTGNFTYVGPQTVEILGYPLSDWYIDDFWQKHMHPEDREWA-IQYCQESSLSLNNYEFE 596

Query: 511 RKSL--QGTLELLSDSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEA----- 561
            + L   G +  L D +   +++   N   +L    +++TD  +AE+   +  E      
Sbjct: 597 YRMLAADGRVVWLYDII---NVVRDENGPQLLHGFMLDITDRKQAEQEREQLLEREKAAR 653

Query: 562 --LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                A+ +K+ F+  +S+ELR+PL  I+G+T LL+  K     +  ++ +E I  ++  
Sbjct: 654 ADAESANRMKDEFLATLSHELRTPLNAILGWTQLLRNRKFDEATT--ARALETIERNTKS 711

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ D+LD++ +  G + L+   I L  L+     ++        I IK   D ++G 
Sbjct: 712 LAQLIEDVLDVSRIIRGTLHLSIHRIKLVPLVEAAIDTVRPAAEAKEINIKCKFDPEVGI 771

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            V D  RL Q+   +LSNA+ F+SKG +V ++  R        V + G  I  +    VF
Sbjct: 772 VVGDTNRLQQVVWNLLSNAVKFTSKGGSVDVQLERIESSVQIRVSDTGVGIAAEFLPHVF 831

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPSK 791
            RF        R   G+GLGL+IV   + LHGG VS+ S       T    +P K
Sbjct: 832 ERFRQADSSSTRSHGGLGLGLAIVRHLVELHGGTVSVESLGVGQGATFIVNLPMK 886


>gi|117926231|ref|YP_866848.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609987|gb|ABK45442.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1118

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 131/779 (16%), Positives = 266/779 (34%), Gaps = 88/779 (11%)

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW----LKFHH 123
           Q  +   L+     +    D + + P  +      +   Q        + W    +    
Sbjct: 217 QHQRLAMLVEGMPAVIYTEDLRTQLPYYVSPQAVVLLGGQGCQADEPLDVWWNRHVWAED 276

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI--------LSLDGIY 175
           +  L  A + L+K  +   +         ++ +G++       R+        L + G+ 
Sbjct: 277 WETLQHARQMLKKHKRPMQVEY-----RMVRQDGQLIWVRDVARLVCDEQGLPLLVQGMV 331

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE------ 229
            +++E     +KL      F+ L+++        +  G I   N ++ K T  E      
Sbjct: 332 MDVSEARHTHEKLIASEVRFRQLYENAPIAYQSLNTEGVIQNVNQAWLKKTGYELSQVLD 391

Query: 230 -------GIVFQKAIGESRKLFKEE---IKKRMISSSALEKNFCETVSTLEHGNN--KSY 277
                   +  ++ + +  + F +             A  +    +++     +   +  
Sbjct: 392 HSLFEFLVVGQEQEVAKKFEAFLQAGYVQDLHYELRCADGRALKVSINGQVSRDRSGRLV 451

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           K   VL    E            + +  +    IL +    +   D      F N + + 
Sbjct: 452 KTHCVLTDITEQ-----DRAAQALQESESRLRLILASTGEGLFGLDLQGNFIFANPACLR 506

Query: 338 LWEI-DLAFLATNP-------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           +    D   L   P        + + +   R     P           I      +    
Sbjct: 507 MMGYRDDRQLLGKPMLEIVSCCSSQFVR--RGKGSCP--------ISQILKTGLPNHAEG 556

Query: 390 DTWHLPNGQTLHVIVTSNP------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           + +   +G        S+P        G +  F +++ +V  +T             + +
Sbjct: 557 ELFRRADGSFFSTEFWSHPIQQNGELVGAVVTFIDISQRVLNQTALKASELKYRTIFESV 616

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
              + +    G ++  N A +S +         G  IR           ES     F A+
Sbjct: 617 PTPLLILDTSGVVRDVNSAHQSTFGRFAGGSLMGVSIREHPGVAGSLLAES-----FLAL 671

Query: 504 ITSFDDERKSLQGTLELLSDSV-LEYSIIPLPN---------AQTMLTFVNVTDSVRAER 553
                   +    T+E   +++      +P               ++   N+TD  + E 
Sbjct: 672 AKGEPMPLQQASYTMEAEGEAIHFNVRGVPFVTRDGEGREDLQGALVIHENITDLKQTEL 731

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E    A   K  F+  +S+E+R+P+  ++G  +LL  +    +N++Q  Y+E +
Sbjct: 732 KLRKAVEEADCATHAKGDFLAVMSHEIRTPMNLVVGMAELLLET---DVNAEQKHYLEKL 788

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL+L+N+ILDL  +D G +KL         LL+EV   I+       + +    
Sbjct: 789 QKAGDTLLSLINNILDLTKLDEGQLKLLDEPFAPQALLDEVSGIISLAAEAKGLTLSCEI 848

Query: 674 -DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSS 729
            +G     + D  R+ Q+   +LSNA+ F+ +G     + ++ A       ++V ++G  
Sbjct: 849 QEGVPERVLGDSVRIKQVLLNLLSNALKFTQQGFIRLSLTVEGAEGAQQLCYAVSDSGMG 908

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           IP+     VF RF        RR  G GLGL+I +  + L  G + +SS  +       
Sbjct: 909 IPDYHLDEVFERFSQGDSSMTRRFGGSGLGLAICKKLVILMQGQIQVSSQVDVGAIFQI 967


>gi|298387678|ref|ZP_06997229.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298259534|gb|EFI02407.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 921

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 208/513 (40%), Gaps = 29/513 (5%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N   +I    ++  L F NR F+    I  +     
Sbjct: 259 GYIQNITDIQRRRNDINTLTHAINNAKESIFAAKEDGTLIFANRQFLHNHGIPESEEIGK 318

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI------ 403
                 L+    A  +  Q +W    ++I        +     H P+  + +++      
Sbjct: 319 ------LKIYEIAGDMNTQKDWHERCKDIL----HGGSRSFVAHHPSKVSKNILAYEGIM 368

Query: 404 --VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKL 458
             VT++    + W F  +++ ++  E +   L  +   TID+L  G+ V     D R   
Sbjct: 369 YNVTNDSGEESYWSFSHDISERLHYEAQIKRLNLIMDTTIDNLPAGIVVKEINNDFRYIY 428

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N                           +    E D           +  E K   G  
Sbjct: 429 RNRE-SYNRNLCIGESIGKNDFDYYPPEVAEKKREEDTLVATTGRGLHWTTEGKDKNGNE 487

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +L    +      L +   +    ++T+  + +R L    E    +D++K++F+ ++S+
Sbjct: 488 IILDKRKIRVDGDELSSPIIVSIEWDITELEKIKRELQTSKEKAEMSDKLKSAFLANMSH 547

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GF+ L+  S+      ++  + E + A++  LL L+N+ILDL+ +++GI+
Sbjct: 548 EIRTPLNAIVGFSHLIAESEN---KEERKTFYEIVEANNERLLQLINEILDLSKIESGII 604

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +   + I +N L  EV  +   +  +  +++             D+ R+ Q+FS ++ NA
Sbjct: 605 EFTSAPININSLCKEVHDAHVFRTPQ-GVQLIYEPSENGLVIETDKNRVFQVFSNLIGNA 663

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
             F+  GS +           +F V + G+ I  +    VF RF    +  Q  G GLGL
Sbjct: 664 FKFTKAGS-ISYGYKLVGNQIVFHVTDTGTGIEPEKIGRVFERFAKLNNYAQ--GTGLGL 720

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SI ++ +   GG +S+SS     TT    +P +
Sbjct: 721 SICKTIVERLGGEISVSSVVGQGTTFTFTLPYE 753



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 50/441 (11%), Positives = 132/441 (29%), Gaps = 72/441 (16%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           I QR+++ +++ +    L EI         +    + +             +G      +
Sbjct: 139 ITQRSNVKRQLEQVNRNLREIQKVAQIGQWMYNTRDNVF----------YYMGYTGVLCE 188

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA 164
                  L  ++ ++     +  +    K            E  N+ +I    RV+G   
Sbjct: 189 ESSRSISLEKYQEFIVEEDRLSFTNWCRK----------NEEGLNEDSISYRVRVAGEIY 238

Query: 165 FLRILSLDGIYSELAETT----------LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           ++R+ +   +  EL   +             ++  N I+      ++    ++   + G 
Sbjct: 239 YMRLQAY--LRDELPNGSCNIEGYIQNITDIQRRRNDINTLTHAINNAKESIFAAKEDGT 296

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           +++AN  +  N    GI   + IG+ +          +      +K++ E    + HG +
Sbjct: 297 LIFANRQFLHN---HGIPESEEIGKLK-------IYEIAGDMNTQKDWHERCKDILHGGS 346

Query: 275 K--------------------SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYE 310
           +                     Y +            + D+S+ +    Q+         
Sbjct: 347 RSFVAHHPSKVSKNILAYEGIMYNVTNDSGEESYWSFSHDISERLHYEAQIKRLNLIMDT 406

Query: 311 ILHNLTVAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            + NL   I +   + +    + NR       + +         D     +    +  + 
Sbjct: 407 TIDNLPAGIVVKEINNDFRYIYRNRESYN-RNLCIGESIGKNDFDYYPPEVAEKKREEDT 465

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
           L   T +   ++     +   +   + + + + V          + +  ++T    ++ +
Sbjct: 466 LVATTGRGLHWTTEGKDKNGNEI--ILDKRKIRVDGDELSSPIIVSIEWDITELEKIKRE 523

Query: 429 YNTLVKVQGETIDHLSEGVAV 449
             T  +   E  D L      
Sbjct: 524 LQTSKEK-AEMSDKLKSAFLA 543


>gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 763

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 177/369 (47%), Gaps = 6/369 (1%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGR--IKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            K + L +     I+H    V  +  +    ++L +          ++ LS      +I 
Sbjct: 384 EKSHELNEEMNNIIEHSPVTVFKWKNEKGWPVELVSENITQFGYNADDFLSKQMDYADII 443

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   E    +     + +F  + + +   G +  + +  L ++             
Sbjct: 444 HPDDVGRVEDRLGESLKRHVPNFISQYRIISKSGEIFWVEEQTLSHADQNGDTKYLHGII 503

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           VN+T   +AE  + +        +  K+ F+ ++S+ELR+PL +IIGF++LL    +G +
Sbjct: 504 VNITKRKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDI 563

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N+KQ +Y+  I      LL+L+N+ILD++ V++G M+L+Y    ++ +++++   +    
Sbjct: 564 NNKQERYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLA 623

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N I I    D +L    AD+ ++ QI   +LSNA+ F+++  T+ ++A  D+      
Sbjct: 624 ITNRIEIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEAIFDDKLMQIC 683

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +K+NG  I ++  + +F  F    +A   + +G GLGL++V++F+ +HGG++ + S    
Sbjct: 684 IKDNGIGIEKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDSEMGK 743

Query: 781 VTTINCRIP 789
            +     IP
Sbjct: 744 GSAFTFTIP 752


>gi|167899886|ref|ZP_02487287.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 7894]
          Length = 771

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 106/502 (21%), Positives = 200/502 (39%), Gaps = 29/502 (5%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
            +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ +  
Sbjct: 127 HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAYDGR 182

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFEN 418
                  +  E++    +S+          +GQ + +   ++P         G + +  +
Sbjct: 183 G-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRD 241

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+      
Sbjct: 242 IS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCD 297

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEYSII 531
               IA    R +   +        I + D         R     +   + D       +
Sbjct: 298 VAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIAL 357

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I G+ 
Sbjct: 358 SLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWI 417

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L  ++
Sbjct: 418 EVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIV 474

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V + 
Sbjct: 475 NDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVS 534

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHG 769
             R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     LHG
Sbjct: 535 LERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 770 GHVSISSSD-EGVTTINCRIPS 790
           G V  +S+     TT    +P+
Sbjct: 595 GKVEAASAGKNRGTTFAITLPA 616



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 46/161 (28%), Gaps = 15/161 (9%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            L  SL   V   D+ G + + N S       +    +           +  +   + +S
Sbjct: 131 TLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRAS 189

Query: 257 ALEKNFCETVSTLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVN 302
           ALE       S    G      + +   I    +          G   I  D+S E   +
Sbjct: 190 ALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS 249

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                   ++     AI     NR +   N +   ++  D 
Sbjct: 250 AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 41.1 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/295 (10%), Positives = 76/295 (25%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++    L   R +                     Y +LL     
Sbjct: 89  MQLATFAVVSCAICAIVVA---LKGSRRANDALRRR-------EAAARHYYETLLQSLTQ 138

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 139 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 198

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 199 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 249

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 250 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 305

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 306 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 453

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 151/364 (41%), Gaps = 26/364 (7%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                    ++ +++GV       R+ L NPA + ++  +EN       I+ I       
Sbjct: 110 EERNRAQAILNSMADGVIALDKYRRVILLNPAVKDVFGLKENEGLGMDLIKVI------- 162

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDS 548
               +  DLF+    +  +++  +   L++L+         + PL      +  V     
Sbjct: 163 -RNYELDDLFSQ---ALHNQKTIVSNELQILTPEPRFFRVHVSPLKGINGEIIGVVGLLR 218

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ER          K + ++  FV +VS+ELR+PLT+I GF + L    +         
Sbjct: 219 DITERR---------KLERMRTEFVANVSHELRTPLTSINGFLETLLDGAIED-PKTARH 268

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++E ++A +  L NL++D+L L+ ++     LN   + L D++N   Q    +  E  I+
Sbjct: 269 FLEIMNAETKRLANLIDDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIK 328

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +  +   KL     D   L Q+   ++ NA+ ++     V +    +       V + G 
Sbjct: 329 LFTVLPDKLPQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVGVNLNREKVRVYVADTGI 388

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP++    +F RF        R   G GLGL+I +  + +HGG + + S     +T + 
Sbjct: 389 GIPQEDLPRIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPG-GSTFSF 447

Query: 787 RIPS 790
            +P 
Sbjct: 448 TLPL 451



 Score = 44.2 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 31/194 (15%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           + ++      IL+++   +   D+ R +   N +  +++ +             +  +  
Sbjct: 108 ITEERNRAQAILNSMADGVIALDKYRRVILLNPAVKDVFGLKENEGLGMDLIKVIRNYEL 167

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----GGTIWM 415
                    N KT   N   +             P  +   V V+          G + +
Sbjct: 168 DDLFSQALHNQKTIVSNELQILT-----------PEPRFFRVHVSPLKGINGEIIGVVGL 216

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNP 461
             ++T +  LE            +  T +      ++ L +G A+  P      +++ N 
Sbjct: 217 LRDITERRKLERMRTEFVANVSHELRTPLTSINGFLETLLDG-AIEDPKTARHFLEIMNA 275

Query: 462 AFRSLWKTEENRLS 475
             + L    ++ L 
Sbjct: 276 ETKRLANLIDDLLQ 289


>gi|117923957|ref|YP_864574.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607713|gb|ABK43168.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1064

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 96/515 (18%), Positives = 192/515 (37%), Gaps = 33/515 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  V ++      +L +    I   D        N + V L     +          L 
Sbjct: 279 RESEVQERQLQIELLLDSAGEGIYAIDTQGICIQCNPAAVALLGYASSTELVGRDIHTLC 338

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGGTIW 414
                        +       + +  +     ++     +G    V +  +P  +GG + 
Sbjct: 339 HRADEQGTHMPHSDCPG--CKVIASGEPVHLAQEYLQRQDGSVFPVEMRIHPMHQGGRVV 396

Query: 415 ----MFENLTVQVDLETKYNTLVKVQGETIDHLS--------EGVAVFGP--DGRIKLSN 460
               +F++++ ++D E K     +     +  L         + +       D   +L+ 
Sbjct: 397 GAVVLFDDISRRLDAEQKLRLSERHFRTLVQALPGTFYKCAPDPLCTMYSLGDNIAELTG 456

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A  S  +  E   S   H  +          E+    L   ++   +       G    
Sbjct: 457 YAADSFIENHERSFSSVVHAED-----WPRVREALDQALAQGVVYHLEYRVNHTDGKPRW 511

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + D                   +++T+  + E+ L    +     +  K+ F+  +S+E+
Sbjct: 512 VMDRGQAVYDEAGRAEVLYGVLLDMTERKQYEQRLESARQQADAGNRAKSEFLAVMSHEI 571

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+G  DLL  + L  +   Q  Y+     +   L+ L+ DILDL+ ++ G ++L
Sbjct: 572 RTPLNAIMGMGDLLGETALSPV---QRHYLSISQHAGETLVELIEDILDLSRIEVGELEL 628

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAM 699
             +   +  L+ EV + + +  H+  + + +  D  L    + D++RL QI   +L NA+
Sbjct: 629 EPAPFEVEALVEEVCEVVTSSAHDKGLILLMRIDPLLPPVLIGDKKRLRQILFNLLFNAV 688

Query: 700 DFSSKGST---VILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
            F+  G     +   AAR   G  +  V++ G  + E+M + VF  F         Q  G
Sbjct: 689 KFTKHGEVMLDIRHDAARSAAGAVLLQVRDTGVGMAEEMIERVFEPFTQGDSTITRQYGG 748

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL+I +  ++  GG + + S+    TT   ++
Sbjct: 749 SGLGLTICKRLVSKMGGDIQLESALGRGTTATVQL 783


>gi|206580641|ref|YP_002238911.1| sensory box histidine kinase/response regulator [Klebsiella
           pneumoniae 342]
 gi|206569699|gb|ACI11475.1| sensory box histidine kinase/response regulator [Klebsiella
           pneumoniae 342]
          Length = 897

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 102/495 (20%), Positives = 210/495 (42%), Gaps = 27/495 (5%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L+ L  A+ I+D    LQ  N      +     +LA   + + L E    A    +    
Sbjct: 9   LNLLPSAVMIYDDRERLQAWNDKVALFYPTIAPWLAVGATLESLAEKFIDAGYNIDPGRQ 68

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +T +E I    + +  H +     N + +++       GG + +  ++T   +     + 
Sbjct: 69  QTLREAIIRNCRQT-NHCEVRQSGN-RRIYIQHQRLADGGIVSLHTDITELDEARRSRHQ 126

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L      T + +  G+  +         N    ++    ++R      +R +        
Sbjct: 127 LHDDFLFTAESIQIGIWDWQVSHDNLQVNDTLLAMVG--QSRAQWRYPLRFML----NLV 180

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLE-----------LLSDSVLEYSIIPLPNAQTML 540
           +E D   L  A+I S ++     +  L            LLS  ++  ++      + + 
Sbjct: 181 HEDDRTTLQQAMIASQNEHMPVFECELRVQHPTQGWRWMLLSGQIVTLNMQQQAE-RVIG 239

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T    AE    E  +  R+A+E K++F+ ++S+E+R+P+  I+G T L   +   
Sbjct: 240 TLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT--- 296

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q +Y+  + +S+  LL+++NDILD + +++G M+++   + +   +  + +    
Sbjct: 297 PLTAEQREYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMP 356

Query: 661 KMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
              E  I + V     +    + D  RL QI + +L NA+ F+ +G  ++ +  A D   
Sbjct: 357 AASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESR 416

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + F +++ G  I  +  K++F  F        RR  G GLGL+I    ++L GG + + S
Sbjct: 417 WRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVES 476

Query: 777 SDEGVTTINCRIPSK 791
                +     +P +
Sbjct: 477 QPGAGSEFAFTLPLE 491


>gi|119488833|ref|ZP_01621795.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119454994|gb|EAW36136.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1205

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 121/666 (18%), Positives = 241/666 (36%), Gaps = 79/666 (11%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
            +  E+    +  ++L    +    + D+ +  +   ++A  I+  N   +K     G   
Sbjct: 563  LQREIEARAILAEELLASEARLAGILDNANDAIISVNEAHQIILFNKGAEK---IFGYQS 619

Query: 234  QKAIGESRKLF------------------KEEIKKRM--------ISSSALEKNFCETVS 267
            ++ + ++  L                     +  + M           +  E     ++S
Sbjct: 620  EEVLNQALDLLLPRRFSATHCEHIKTFRKHSQTARNMGENREISGRRQNGQEFPAEASIS 679

Query: 268  TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
             L+ GN  +Y  +    S   A        E  + +       +     V I   D    
Sbjct: 680  RLQLGNTITYTAILRDISERVAAFKERQQAETALRESEQRYATLAEVSPVGIFRSDAVGN 739

Query: 328  LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW--KTWKENIFSVYKSS 385
              + N  + ++  +         S ++ L         P+  +   + WK+ +    + S
Sbjct: 740  CLYVNERWCQIAGL---------SLEQSLGQGWIQTLHPDDRDRVIQAWKQAVCD--RCS 788

Query: 386  ETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGE 438
               +  +   +G    V   +           G +    ++  +   E       +    
Sbjct: 789  FQLEYRFQRTDGMITWVFGQAVVEIDIKGEIKGFVGSITDINDRKQAEATLQESERRWRS 848

Query: 439  TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             ++++   V      G I   NP F  L    +  L              R        +
Sbjct: 849  LLENVHLAVVGLNDQGIIDYVNPFFLELTGYTQTELLGQDWFTTFLPASQRSPVYQYFQE 908

Query: 499  LFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            +    + S+       Q T+   S  + ++ ++   L + Q              ER   
Sbjct: 909  ILKQQLNSY------YQNTILTKSGEEKIIAWNNTRLQSLQGDALGTMSIGEDITER--- 959

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                     + +KN F+  VS+ELR+PLT I G  +LL T  +   + +    ++  + S
Sbjct: 960  ------YAIERMKNEFISVVSHELRTPLTAIHGALNLLSTGLVAPESPRGQHVIKIAAES 1013

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            +  L+ LVNDIL+L  ++ G +KL    +    LL   +  +    +   I+++++   +
Sbjct: 1014 TERLVRLVNDILELERLECGRIKLVKHCVNAAQLLRVAQDQMQVMANRTGIKLEIL--PQ 1071

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD-----FIFSVKNNG 727
               F AD  R++Q+ + ++SNA+ FS  GST+ L    +     G+      +F V++ G
Sbjct: 1072 DIEFEADGDRMIQVLTNLISNAIKFSDSGSTIQLSVEAEWRTFGGETPIASVLFCVRDQG 1131

Query: 728  SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              IP +  +S+F RF  V  +   Q+ G GLGL+I  S +  HGG + + S  +  +   
Sbjct: 1132 RGIPLEKMESIFERFQQVDASDSRQKGGTGLGLAICRSIVEQHGGIIWVESVLDQESCFY 1191

Query: 786  CRIPSK 791
              IP K
Sbjct: 1192 FSIPVK 1197



 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 64/611 (10%), Positives = 180/611 (29%), Gaps = 88/611 (14%)

Query: 39  IPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQ 98
           + I  L +    + + +NE      ++    ++   L+  +    +++       E I  
Sbjct: 133 LSIQTLAKANQKVLQDLNEHQLNKDQLQMAQARLQHLIQSSP--VVIYSSPTSGHECITF 190

Query: 99  LHQRID--IPQTDTDLLSFENW---LKFHHYIKLSKATEKLRKEGQ-----SF------- 141
           +   +   +            W   +      ++     ++ ++G+      F       
Sbjct: 191 ISDNVQSVLGYESQKFADTGFWATHIHPEDACRIFAEFPRVFEQGKHSYEYRFLHGDGTY 250

Query: 142 -----DLVAETQN-DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
                +L   T +    ++I G       ++ I         L ++ ++ + L+      
Sbjct: 251 HWIQDELRLVTDSQGKPLEIVGY------WIDINVRKQAQFALKDSEIRYRSLAQR---L 301

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGESRKLFKEEIKKRMI 253
             +  +    ++  D+ G +L+AN +Y+  T+    G +        ++    +I +++ 
Sbjct: 302 HSITSNAPIYIYELDRQGRVLFANRTYENVTQEQVLGNLLIDCFPPEKQPNITQIIEQVF 361

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVL-----NSFGEAGIAIDVSKEITVNDQLTHT 308
           ++  ++    E +     G  ++Y                  IA D+S+       L   
Sbjct: 362 TTGQVQS--LEYIIPNSTGEIRAYTAQLAPIWMNSTFNSVVFIATDISEYKQAEQTLQRH 419

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             I   +   + + D    +   N     ++    + +    S    L        +P Q
Sbjct: 420 ALIFEQIYDGVIMTDLTGRIIDWNPGAERMFGYSHSEVVGKTSA---LVHYPEQTPMPTQ 476

Query: 369 LNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
              +  K+  + + + +   ++ T  + +   + +          I ++ +++ +   E 
Sbjct: 477 TMLEHIKKQGYWLSEMTFIRENKTQGICDTIVVPIFDHQGETVAVIGVYHDISDRKQAEL 536

Query: 428 KYN---------------------------------------TLVKVQGETIDHLSEGVA 448
           +                                                  +D+ ++ + 
Sbjct: 537 ELQQYRDHLEYLVDQRTSQLEKSNAKLQREIEARAILAEELLASEARLAGILDNANDAII 596

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                 +I L N     ++  +   +        +    S  + E        +      
Sbjct: 597 SVNEAHQIILFNKGAEKIFGYQSEEVLNQALDLLLPRRFSATHCEHIKTFRKHSQTARNM 656

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL--TEKNEALRKAD 566
            E + + G  +   +   E SI  L    T+     + D      A    ++ E   +  
Sbjct: 657 GENREISGRRQNGQEFPAEASISRLQLGNTITYTAILRDISERVAAFKERQQAETALRES 716

Query: 567 EIKNSFVQHVS 577
           E + + +  VS
Sbjct: 717 EQRYATLAEVS 727


>gi|255691863|ref|ZP_05415538.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622588|gb|EEX45459.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 888

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 106/487 (21%), Positives = 206/487 (42%), Gaps = 27/487 (5%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL----AFLATNPSNDELLEFLRSANK 364
             I         IF  NR    +N   V+  +I        +A  P+ +   E  R+A +
Sbjct: 259 ESIFAAKPDGTVIF-ANRR-FLYNHGLVDNTDISRLKIYNIVADMPTEEAWQERCRNAVQ 316

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
                       N F  +  S  HKD   L    T++ +++ +          +++ ++ 
Sbjct: 317 NG---------SNTFIAHHPSRIHKDI--LAYECTMYNVISDSGEESFWSFAHDISERMR 365

Query: 425 LETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            E +   L ++   TI++L  G+ V     D R    N    +     +N +    +   
Sbjct: 366 YEAQIKRLNRIMDTTINNLPAGIVVKEINNDFRYVYRNRESYNRDHFSDNPVGKNDY-DF 424

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                +    + D           +  E K   G L +L    ++     L +   +   
Sbjct: 425 YPPIVAEKKRQEDIEVAATGKGLHWIAEGKDRNGNLIILDKRKIKVDGDELSSPIIVSIE 484

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T+    +R L    E    +D +K++F+ ++S+E+R+PL  I+GF+ L+  S     
Sbjct: 485 WDITELEMIKRELQSSKEKAEMSDNLKSAFLANMSHEIRTPLNAIVGFSHLITESDDA-- 542

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++  Y + + A++  LL L+N+ILDL+ +++G ++ ++    L++L  E+  +   + 
Sbjct: 543 -EERKTYYQIVEANNERLLQLINEILDLSKIESGTIEFSFGLTSLHNLCQEIHDAHIFRT 601

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  +++      +      D+ R+ Q+ S ++ NA+ F+ +GS +       +G  +F 
Sbjct: 602 PE-GVQLVYEPSDESLRIETDKNRVFQVISNLIGNAVKFTKEGS-IKYGYELVDGQIVFH 659

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G+ I  +    VF RF    +  Q  G GLGLSI +S +   GG +S+SS     T
Sbjct: 660 VTDTGTGIEPEKVGRVFERFAKLNNHAQ--GTGLGLSICKSIVERLGGQISVSSIVGVGT 717

Query: 783 TINCRIP 789
           T    +P
Sbjct: 718 TFTFTLP 724



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 62/462 (13%), Positives = 151/462 (32%), Gaps = 60/462 (12%)

Query: 149 NDCAIKIEGRVSGSCAFLRILSLDGIYSELAE------------TTLKCKKLSNHISVFK 196
           N  +I    R+ G   ++RI +   +  EL +            T L+ ++  N I+   
Sbjct: 196 NQESISYRIRLDGDIFYVRIQTY--LREELPDGSCNIEGYIQNITVLQHRR--NDINTLT 251

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKN---TETEGIVFQKAIGESRKLFKEEIKKRMI 253
              ++    ++     G +++AN  +  N    +   I   K       +  EE  +   
Sbjct: 252 HAINNAKESIFAAKPDGTVIFANRRFLYNHGLVDNTDISRLKIYNIVADMPTEEAWQERC 311

Query: 254 SSSALEKN--FCETVSTLEHGNNKSYKIV--RVLNSFGEA---GIAIDVSKEITVNDQLT 306
            ++    +  F     +  H +  +Y+     V++  GE      A D+S+ +    Q+ 
Sbjct: 312 RNAVQNGSNTFIAHHPSRIHKDILAYECTMYNVISDSGEESFWSFAHDISERMRYEAQIK 371

Query: 307 HTYE----ILHNLTVAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNP---SNDELLE 357
                    ++NL   I +   + +    + NR             + NP   ++ +   
Sbjct: 372 RLNRIMDTTINNLPAGIVVKEINNDFRYVYRNRESYN-----RDHFSDNPVGKNDYDFYP 426

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            + +  K  E +      + +  + +  + + +   L + + + V          + +  
Sbjct: 427 PIVAEKKRQEDIEVAATGKGLHWIAEGKDRNGNLIIL-DKRKIKVDGDELSSPIIVSIEW 485

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T    ++ +  +  +   E  D+L              L+N +               
Sbjct: 486 DITELEMIKRELQSSKEK-AEMSDNLKSAF----------LANMSHEIRTPLNAIVGFSH 534

Query: 478 THIRNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               +  A   + Y +      +    +I    D  K   GT+E        + +  L N
Sbjct: 535 LITESDDAEERKTYYQIVEANNERLLQLINEILDLSKIESGTIE------FSFGLTSLHN 588

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               +   ++  +    + + E ++   + +  KN   Q +S
Sbjct: 589 LCQEIHDAHIFRTPEGVQLVYEPSDESLRIETDKNRVFQVIS 630



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 75/262 (28%), Gaps = 31/262 (11%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVS----TLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            +L  E  + +++           +VS             +K +             D++
Sbjct: 54  FELLPERTRDKVMPVFETVIGEHRSVSKNFKLELKNETFYFKCLMHPYDDMVLCQYRDIT 113

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS-----FVELWEIDLAFLATNPS 351
           +   V  QL      L  +   +A          +N +     +     +    L     
Sbjct: 114 QRSNVKRQLEQANRTLREI-QKVAQIGH----WTYNTAENVFHYTGYTGV----LCKEDV 164

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----- 406
                +  +      +   ++ W E   S +  ++         +G   +V + +     
Sbjct: 165 QHISFDMYKQLIMEEDHPAFENWCEKNVSEF--NQESISYRIRLDGDIFYVRIQTYLREE 222

Query: 407 NPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            P G        +N+TV        NTL       I++  E +    PDG +  +N  F 
Sbjct: 223 LPDGSCNIEGYIQNITVLQHRRNDINTL----THAINNAKESIFAAKPDGTVIFANRRFL 278

Query: 465 SLWKTEENRLSPGTHIRNIAAT 486
                 +N       I NI A 
Sbjct: 279 YNHGLVDNTDISRLKIYNIVAD 300


>gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 1051

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 133/788 (16%), Positives = 267/788 (33%), Gaps = 62/788 (7%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN--CLTIVW----DGKD 90
            +   + + R      K               L+    ++   +       W        
Sbjct: 139 AVSGAVAIARDVTKTRKAEAALRESDESFQVALTHTPVMVFAADMDQR-FSWVFNPPFGL 197

Query: 91  ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150
              EIIG+  Q +  P+  +++ +  + L         +   + R     +D+  E + D
Sbjct: 198 TAEEIIGKTLQELIKPEDASEVQALVSELIESGRAIRQEVVIRFRGRETCWDVTIEPRRD 257

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
               + G +SG         L G+  +L E     K        F+ +F     ++    
Sbjct: 258 ----VRGVISG---------LIGVAYDLTERRWAEKAREQSDEKFRRIFHLSPAILAIST 304

Query: 211 -QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
            Q G  L  N ++ K                 +L+ E  ++ ++++   E+    +    
Sbjct: 305 LQDGVYLDVNEAFSKLLGYSREEVTGKNAFELQLWAEPAQRNLLAAQLKERGSLRSRLVR 364

Query: 270 ---EHGNNKSY----KIVRVLNSFGEAGIAIDVSKEITVNDQLTHT----YEILHNLTVA 318
              + G  K+     +++ V         A D + +   +D +         I+ N +  
Sbjct: 365 YRCKSGEIKTLVISAELMEVEGQQCVLAAASDFTMQQRRHDAIRKREMEWRAIVENTSDI 424

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKEN 377
           IA  D      + N++  ++  +    +     +            K   +  + + K  
Sbjct: 425 IARIDHESRYTYINQAVTKVTGLLPREIVGEAFHTRGFSGENLVKAKRALKTVFDSGKPG 484

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQ 436
           +  +  S +    T  +     L    +      T+     +++     E +  +  +  
Sbjct: 485 LLELAASGQGRPVTLQV----CLVPEFSRTGEVETVLAISRDISELKQTEQELRSSREHY 540

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---SPGTHIRNIAATCSRYYNE 493
               + +  G       G     N A+          +     G  +   AA  +  +  
Sbjct: 541 RLLYESVPLGYQSLDARGCYLEVNQAWLEAMGYSREDVIGQRFGRFVTESAAYLAESFAA 600

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                  +     F+  RK     +      +           QT     +VT   RAE 
Sbjct: 601 FKQCGEISG--AEFEMVRKDGSRFIAAFYGKISTDEQGRFR--QTHCIMHDVTARRRAEE 656

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            +     A   A   K+ F+ H+S+ELR+PL  I+G  +L   + +   + KQ +Y+E  
Sbjct: 657 EIRRAQSAAEAASRAKSMFLAHMSHELRTPLNGILGMVEL---AHMACADEKQCKYLELA 713

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+++NDILDLA ++AG  +L      L +++    + +A       + +    
Sbjct: 714 KQSGHTLLDIINDILDLAKIEAGKAELKNEPFSLREVMESTIEPLAMLGRRKGLEVTWRM 773

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR----------DNGDFIF 721
           D ++      D+ RL Q+ + ++ NA+ F+ +GS  V L  +R               IF
Sbjct: 774 DPRIPDRLAGDQGRLRQVLANLVGNALKFTERGSVSVDLGLSRGGFETRPYCPAGMRLIF 833

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           S+ + G  IP+D    +F  F         +  G GLGL I +  + +  G +   S   
Sbjct: 834 SIADTGIGIPQDKLPHLFESFTQALTSAHVKFGGTGLGLCISKRLVEMMQGTIWAESVVG 893

Query: 780 GVTTINCR 787
             +T +  
Sbjct: 894 KGSTFSFT 901


>gi|284050377|ref|ZP_06380587.1| multi-sensor Signal transduction histidine kinase [Arthrospira
           platensis str. Paraca]
          Length = 578

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 112/515 (21%), Positives = 207/515 (40%), Gaps = 39/515 (7%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            G A D+S        L  + E+L    ++      I+D +R L+F N+  +E       
Sbjct: 79  VGFAEDISDRKQAELALAESEELLRLAVNHAPDIFVIYDSDRRLKFVNQRVLE------- 131

Query: 345 FLATNPSNDELLEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
              T  S +  +        LPE+  ++    E       + +  + T  LPN     VI
Sbjct: 132 --RTGWSEETFIGRRDEELFLPEETCHYLPLLEKTIQTL-TIQIGEATITLPNQTPKTVI 188

Query: 404 VTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           +   P           + +  ++T     E K     +      +  + G+A+    G  
Sbjct: 189 IKYLPLLDKQGRLSQILGLTFDITHYKQAEQKLRDSEERFRTAFEDAAIGMALLSSQGNC 248

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N +   +   +E  L      ++I               L    +  +  E++ L  
Sbjct: 249 LKVNRSLCEMLGYQEAELLQLK-CKDITHPEDYEQEVKSIKKLIEGQVKYYYVEKRYLHK 307

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              ++    +  S+  + N   +  +        +ER            +++KN F+  V
Sbjct: 308 QGYVI---WVLLSMSIVRNIDGVPLYFIAQAQNISERR---------AVEQMKNEFISVV 355

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT I G   LL +        +  +++E     +  L+ +VNDILD+  +++G
Sbjct: 356 SHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIEIALLETERLVRMVNDILDIERLNSG 415

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++         +L+ +V  S+    H ++I ++++         A R  +LQ  + ++ 
Sbjct: 416 EVQFQMEACSAQELMMQVINSLQAIAHRDSITLEIL--PTSVQLWAARDAMLQTLTNLVG 473

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           NA+ FS   +TV L A   +   +F V++ G  IP +  K++F+RF  V  +   Q+ G 
Sbjct: 474 NAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEKLKTIFSRFQQVDASDSRQKSGT 533

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI +S I  HGG + + S     +T    IP
Sbjct: 534 GLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIP 568



 Score = 45.3 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 86/281 (30%), Gaps = 24/281 (8%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G   ++++       L+    + ++  +    +    D    + + N    + T      
Sbjct: 80  GFAEDISDRKQAELALAESEELLRLAVNHAPDIFVIYDSDRRLKFVNQRVLERTGWSEET 139

Query: 233 FQKAIGESRKLFKE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
           F     E   L +E      + ++ I +  ++          +       K + +L+  G
Sbjct: 140 FIGRRDEELFLPEETCHYLPLLEKTIQTLTIQIGEATITLPNQTPKTVIIKYLPLLDKQG 199

Query: 288 ----EAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
                 G+  D++     E  + D          +  + +A+          NRS  E+ 
Sbjct: 200 RLSQILGLTFDITHYKQAEQKLRDSEERFRTAFEDAAIGMALLSSQGNCLKVNRSLCEML 259

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY--KSSETHKDTWHLPNG 397
               A L          +     +   E  + K   E     Y  +    HK  + +   
Sbjct: 260 GYQEAELLQLKC----KDITHPEDYEQEVKSIKKLIEGQVKYYYVEKRYLHKQGYVIW-- 313

Query: 398 QTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKV 435
             L + +  N  G  ++     +N++ +  +E   N  + V
Sbjct: 314 VLLSMSIVRNIDGVPLYFIAQAQNISERRAVEQMKNEFISV 354


>gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 826

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 108/541 (19%), Positives = 211/541 (39%), Gaps = 68/541 (12%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               +         +DQ+  +   NR   +  +     +    +N +L    ++    P 
Sbjct: 23  FAAFIDQTVDIFVAYDQDLRIITINRIGAQRLQRPYEQILGQ-TNQQLFG-AQAELIDPF 80

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW-MFENLTVQVDLE 426
            ++     E +F+  +     +  ++            +      +W +  ++T++ DL+
Sbjct: 81  LMSALETGERVFAEQELVFNQQRYYYD---TIYTPTTDARTGERQVWGICRDITIKKDLQ 137

Query: 427 TKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            K   L+K Q          + ++ +   A+   DG     NPA   L   +   L    
Sbjct: 138 KKREALLKQQTIQIEERFRTSFNNATIAKALIALDGSWLQVNPALSQLLGYDPTELLK-L 196

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            I ++     +  +      L     +S+  E++ L      LS   +  S+  + N+Q 
Sbjct: 197 RIEDLTHPEDQDIDRHQVRQLLIGQTSSYQIEKRFLHRLGHTLS---VLLSVALILNSQG 253

Query: 539 -----MLTFVNVTDSVRAE---------------------RALTEKNEALRKADEIKNSF 572
                +    ++T   +AE                     +AL E ++A + A+  K+ F
Sbjct: 254 KPSYFIAEMQDITQRKQAEAALYLQLQKTLQLQTALQTKNQALLESSQAAQAANLAKSEF 313

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  +IG TDLLK +    L+  Q  +VE I  S   LLN++NDILD + 
Sbjct: 314 LAMISHEIRTPMNAVIGMTDLLKDTH---LDPHQQDFVETIRTSGESLLNIINDILDFSK 370

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIF 691
           +++G ++L      ++  + E    + +K     + +  +I  G       D  RL QI 
Sbjct: 371 IESGKLELELHPFPISTCVEEALDIVNSKATAKGLELAYLIEPGTPNHIQGDANRLRQIL 430

Query: 692 SKILSNAMDFSSKGSTVILKAARDN-------------GDFIFSVKNNGSSIPEDMCKSV 738
             +L NA+ F++ G  ++  +ARD               + +F VK+ G  I  +  + +
Sbjct: 431 VNLLGNAVKFTADGEVIVTISARDVATAEMTPEVPLSLHELLFEVKDTGIGIAPEHQQKL 490

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR-----IPSK 791
           F  F         +  G GLGL+I +    L GG + + S     ++         +P  
Sbjct: 491 FQSFCQLDSSITREYGGTGLGLAISKQLCELMGGTIWVESQVGIGSSFFFTMAASALPGP 550

Query: 792 E 792
           E
Sbjct: 551 E 551


>gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1021

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 109/633 (17%), Positives = 230/633 (36%), Gaps = 61/633 (9%)

Query: 205 LVWHRDQAGDILWANISYK------KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            + + D +G ++ AN  +       + +        ++      L    I + +  +   
Sbjct: 161 PIAYVDDSGALVTANAEFLVLTTPGERSAPPIGRPWRSWFRGDDL--AAIDQAIRQARQW 218

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSF-------GEAGIAIDVSKEITVNDQLTHTYEI 311
            +           G+ +   +V + +         G   +  D ++      +L     +
Sbjct: 219 GRAIAAVRLARSDGSEREIDLVVIADHDPNDRFGAGLFLVLKDHTELRDTQSKLERRDHL 278

Query: 312 L----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA---FLATNPSNDELLEFLRSANK 364
           L     +L    A+F     ++   +    L  +       L  NP  D+ L   +   +
Sbjct: 279 LRTVGDHLPE-TALF----QVESSPQGQFRLTHLTQGVETILGLNP--DQCLNDYQCLLE 331

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ------TLHVIVTSNPRGGTIW--MF 416
                +   + + + S   +    +    + + Q       +H+    +  G T+W    
Sbjct: 332 KIHPEDRAGFLQALRSSALTLNDVRCELRVYDSQSALHWVWVHITARRSADGTTLWDGFL 391

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +LT +   E +     +     +DH      +     R+   N  +R +    ++  + 
Sbjct: 392 FDLTSRKIAEQELRAANQRLESFLDHAPYLAWITDEHERLLYLNHPYRQILGLRDDSPAG 451

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         ++    ++   L         +   +  G      + V      PLP  
Sbjct: 452 RTLAEVFGEEKAKACRAANRHLLETNQPFESINTITTADGE-----ERVYLSHKFPLPPE 506

Query: 537 QTML-------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +         T +++T   R E+ L        +A  +K+ F+ ++S+E+R+P+ ++IG
Sbjct: 507 ASGNGPRLVAGTSLDITQRQRLEQELQRARAEAIEASRVKSQFLANLSHEIRTPIASVIG 566

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             DLL TS+L    +++ +    +  ++  L ++VND+LDL+ ++AG M L +S      
Sbjct: 567 LIDLLSTSELS--EAEREETTSLLRLAAEHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQ 624

Query: 650 LLNEVKQSIATKMHENNIRIKVIS----DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           ++      +A +     I + +      +    S   D  RL QI   ++SNA+ FS +G
Sbjct: 625 VIRAALNLLAIQARARGIELVMEPLDQSEPSPPSICTDPTRLRQILVNLISNAIKFSERG 684

Query: 706 STVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             V ++       D+   +  V + G  I  D  + +F  +       QRR  G GLGL+
Sbjct: 685 GRVTVRYGPRIEEDSRWLVIDVVDQGIGIAPDQIERLFTPYTQADETSQRRHGGTGLGLA 744

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I        GG + + S     +T    +P  +
Sbjct: 745 ISRRLAEQLGGELHVRSQVGVGSTFTLTLPCPK 777



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 67/216 (31%), Gaps = 34/216 (15%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG-SCAFLRI-----LSLD 172
           L+  H    +   + LR           T ND   ++    S  +  ++ +      S D
Sbjct: 330 LEKIHPEDRAGFLQALRSSA-------LTLNDVRCELRVYDSQSALHWVWVHITARRSAD 382

Query: 173 GIYS------ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           G         +L    +  ++L       +   D   +L W  D+   +L+ N  Y++  
Sbjct: 383 GTTLWDGFLFDLTSRKIAEQELRAANQRLESFLDHAPYLAWITDEHERLLYLNHPYRQIL 442

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVR 281
                    A     ++F EE  K   +++       +        T   G  + Y   +
Sbjct: 443 GLRDDSP--AGRTLAEVFGEEKAKACRAANRHLLETNQPFESINTITTADGEERVYLSHK 500

Query: 282 VL--------NSFGEAGIAIDVSKEITVNDQLTHTY 309
                          AG ++D+++   +  +L    
Sbjct: 501 FPLPPEASGNGPRLVAGTSLDITQRQRLEQELQRAR 536



 Score = 44.5 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 98/354 (27%), Gaps = 37/354 (10%)

Query: 117 NWLKFHHYIKLSKATEKLRKEGQSF-DLVAETQNDCAIKIEGRVSGSC-AFLRILS-LDG 173
           +W +      + +A  + R+ G++   +     +    +I+  V        R  + L  
Sbjct: 198 SWFRGDDLAAIDQAIRQARQWGRAIAAVRLARSDGSEREIDLVVIADHDPNDRFGAGLFL 257

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWANISYKKNTETEGIV 232
           +  +  E      KL     + + + D L    ++  + +    +      +  ET   +
Sbjct: 258 VLKDHTELRDTQSKLERRDHLLRTVGDHLPETALFQVESSPQGQFRLTHLTQGVETILGL 317

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK-----------IVR 281
                    +   E+I     +                    + Y            I  
Sbjct: 318 NPDQCLNDYQCLLEKIHPEDRAGFLQALRSSALTLNDVRCELRVYDSQSALHWVWVHITA 377

Query: 282 VLNSFGEA---GIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
             ++ G     G   D++     E  +          L +      I D++  L + N  
Sbjct: 378 RRSADGTTLWDGFLFDLTSRKIAEQELRAANQRLESFLDHAPYLAWITDEHERLLYLNHP 437

Query: 335 FVELWEIDLAFLATNPSNDELLE------FLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           + ++  +     A     +   E         + + L     +++      +  +     
Sbjct: 438 YRQILGLRDDSPAGRTLAEVFGEEKAKACRAANRHLLETNQPFESINTITTADGEERVYL 497

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
              + LP         + N          ++T +  LE     L + + E I+ 
Sbjct: 498 SHKFPLP------PEASGNGPRLVAGTSLDITQRQRLE---QELQRARAEAIEA 542


>gi|288942307|ref|YP_003444547.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897679|gb|ADC63515.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1436

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 131/667 (19%), Positives = 261/667 (39%), Gaps = 58/667 (8%)

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW-HRDQAGDILWANISYKKNTET 228
             L  +Y ++ E       L       ++  +  +  +W  R Q G++ + N  + +    
Sbjct: 410  ELVAVYDDVTERRTLQLALEESRERLELALEGSELGMWDWRVQTGEVRF-NDRWARILGY 468

Query: 229  EGIVFQKA-IGESRKLFKEEIKKRMISSSAL----EKNFCETVSTLEHGNNKSYKIVRV- 282
                 +   I     L   + + R+          E    E    + H +     I+   
Sbjct: 469  RLDELEPISIQTWNDLCHPDDRARVDRQLRRHFQGETAHYECEIRMRHKDGHWVWILDRG 528

Query: 283  -LNSFG-------EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
             +  +G        AG  +D+++     ++L      +     +I I D +  +++ N +
Sbjct: 529  KVVEWGPDQRPVRMAGTHLDITERRQTEEKLHQLSLAVEQSPTSIVITDLDACIEYANPA 588

Query: 335  FVELWEIDLAF-LATNPSNDELLEFLRSANKLPEQL-----NWKTWKENIFSVYKSSETH 388
            F  +    L   +  NP    LL+  ++  ++ E L       + W+  + +  K  E +
Sbjct: 589  FTRVSGYTLEEAIGQNP---RLLQSGQTPREIYEDLWVTLQRGEVWRGELHNKRKDDELY 645

Query: 389  KDT-----WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD-----LETKYNTL---VKV 435
             +         P+G+  H +             E L          +ET+   L    + 
Sbjct: 646  VELATISPVRQPDGRVTHYLAVKEDITDLKCAQEELDRYRQHLEELVETRTRELQLAEEH 705

Query: 436  QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNE 493
                ++  ++G+      GR    NPA  ++      +L   P   I + +    R+Y  
Sbjct: 706  SRLILESSADGLYGVDIAGRTTFVNPAACAMLGYTPEQLLGRPSHEIIHHSHVDGRHYPM 765

Query: 494  SD---GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT----MLTFVNVT 546
             D      L    +   DDE         L     + YS  P+         +++F++V+
Sbjct: 766  EDCLLHSTLLNGEVLRGDDEVFWRADGTPL----PVSYSSHPIRREGEIVGAVVSFIDVS 821

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
               +AE A         +   +K+ F+ ++S+E+R+PL  ++GF  +       +  ++ 
Sbjct: 822  TQKQAEAAREAALAEAERLARLKSEFLANMSHEIRTPLNAVLGFAQI---GARETDPNRA 878

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +   I  S  +LL ++NDILD + ++AG + ++ + + L  ++      + T+  +  
Sbjct: 879  RTFFRRILDSGQLLLGIINDILDFSKIEAGKLDIHDAEVDLRAVIERSVDLLTTRAKDKG 938

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +R  +  D  L  +F+ D  RL Q+ + +LSNA+ F+ +G+ V     R+ G  +FSV++
Sbjct: 939  LRFSLEEDPNLPATFMGDDLRLSQVLANLLSNAVKFTDQGA-VTFGIRREEGWIVFSVED 997

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  + ED   ++F  F        RR  G GLGL+I +  + L GG +   S     T 
Sbjct: 998  TGIGMHEDYLANLFQPFEQADGSITRRYGGSGLGLAISKRLVELMGGEIRAWSRFGEGTR 1057

Query: 784  INCRIPS 790
               R+P 
Sbjct: 1058 FETRLPL 1064



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/422 (12%), Positives = 130/422 (30%), Gaps = 67/422 (15%)

Query: 54  KVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL 113
           +       L E      +    L  +      W  +        +  + +     + + +
Sbjct: 420 ERRTLQLALEESR---ERLELALEGSELGMWDWRVQTGEVRFNDRWARILGYRLDELEPI 476

Query: 114 SFENWLKFHHYIKLSKATEKLRKEGQS------FDLVAETQNDCAIKI--EGRVSGSCAF 165
           S + W    H    ++   +LR+  Q        ++    ++   + I   G+V      
Sbjct: 477 SIQTWNDLCHPDDRARVDRQLRRHFQGETAHYECEIRMRHKDGHWVWILDRGKVVEWGPD 536

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
            R + + G + ++ E     +KL        +  +     +   D    I +AN ++   
Sbjct: 537 QRPVRMAGTHLDITERRQTEEKL----HQLSLAVEQSPTSIVITDLDACIEYANPAF--- 589

Query: 226 TETEGIVFQKAIGESRKLFKE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSYK-- 278
           T   G   ++AIG++ +L +      EI + +  +    + +   +      +    +  
Sbjct: 590 TRVSGYTLEEAIGQNPRLLQSGQTPREIYEDLWVTLQRGEVWRGELHNKRKDDELYVELA 649

Query: 279 -IVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE----------------------I 311
            I  V    G       +  D++      ++L    +                      I
Sbjct: 650 TISPVRQPDGRVTHYLAVKEDITDLKCAQEELDRYRQHLEELVETRTRELQLAEEHSRLI 709

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L +    +   D      F N +   +       L   PS+    E +  ++   +  ++
Sbjct: 710 LESSADGLYGVDIAGRTTFVNPAACAMLGYTPEQLLGRPSH----EIIHHSHV--DGRHY 763

Query: 372 KTWKENIFSVYKSSETHK---DTWHLPNGQTLHVIVTSNP------RGGTIWMFENLTVQ 422
                 + S   + E  +   + +   +G  L V  +S+P        G +  F +++ Q
Sbjct: 764 PMEDCLLHSTLLNGEVLRGDDEVFWRADGTPLPVSYSSHPIRREGEIVGAVVSFIDVSTQ 823

Query: 423 VD 424
             
Sbjct: 824 KQ 825



 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 78/272 (28%), Gaps = 19/272 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIF-----DQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            E  + +     + +  ++   + I+      ++  ++  N +   +  ++   L     
Sbjct: 298 AEQDLRESEARFHALFEHMRSGVCIYEAIEDGRDFIIRDLNHAVEYIEGVEATKLLGRRL 357

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
            +                 W+T +          +     W           V   P G 
Sbjct: 358 TEVFPGVAECGFLDVFARVWRTGRAEHIPPRLYHDQRIQGWR-------ENFVYRLPHGE 410

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +++++T +  L+       +     ++    G+  +         N  +  +     
Sbjct: 411 LVAVYDDVTERRTLQLALEESRERLELALEGSELGMWDWRVQTGEVRFNDRWARILGYRL 470

Query: 472 NRLSP--GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG----TLELLSDSV 525
           + L P       ++     R   +      F      ++ E +           L    V
Sbjct: 471 DELEPISIQTWNDLCHPDDRARVDRQLRRHFQGETAHYECEIRMRHKDGHWVWILDRGKV 530

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           +E+     P  +   T +++T+  + E  L +
Sbjct: 531 VEWGPDQRP-VRMAGTHLDITERRQTEEKLHQ 561


>gi|290509876|ref|ZP_06549247.1| sensory box histidine kinase/response regulator [Klebsiella sp.
           1_1_55]
 gi|289779270|gb|EFD87267.1| sensory box histidine kinase/response regulator [Klebsiella sp.
           1_1_55]
          Length = 897

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 102/495 (20%), Positives = 210/495 (42%), Gaps = 27/495 (5%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L+ L  A+ I+D    LQ  N      +     +LA   + + L E    A    +    
Sbjct: 9   LNLLPSAVMIYDDRERLQAWNDKVALFYPTIAPWLAVGATIESLAEKFIDAGYNIDPGRQ 68

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +T +E I    + +  H +     N + +++       GG + +  ++T   +     + 
Sbjct: 69  QTLREAIIRNCRQT-NHCEVRQSGN-RRIYIQHQRLADGGIVSLHTDITELDEARRSRHQ 126

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L      T + +  G+  +         N    ++    ++R      +R +        
Sbjct: 127 LHDDFLFTAESIQIGIWDWQVSHDNLQVNDTLLAMVG--QSRAQWRYPLRFML----NLV 180

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLE-----------LLSDSVLEYSIIPLPNAQTML 540
           +E D   L  A+I S ++     +  L            LLS  ++  ++      + + 
Sbjct: 181 HEDDRTTLQQAMIASQNEHMPVFECELRVQHPTQGWRWMLLSGQIVTLNMQQQAE-RVIG 239

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T    AE    E  +  R+A+E K++F+ ++S+E+R+P+  I+G T L   +   
Sbjct: 240 TLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT--- 296

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q +Y+  + +S+  LL+++NDILD + +++G M+++   + +   +  + +    
Sbjct: 297 PLTAEQREYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMP 356

Query: 661 KMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD 718
              E  I + V     +    + D  RL QI + +L NA+ F+ +G  ++ +  A D   
Sbjct: 357 AASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDESR 416

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           + F +++ G  I  +  K++F  F        RR  G GLGL+I    ++L GG + + S
Sbjct: 417 WRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVES 476

Query: 777 SDEGVTTINCRIPSK 791
                +     +P +
Sbjct: 477 QPGAGSEFAFTLPLE 491


>gi|237716271|ref|ZP_04546752.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262407876|ref|ZP_06084424.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229443918|gb|EEO49709.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262354684|gb|EEZ03776.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 885

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 118/636 (18%), Positives = 250/636 (39%), Gaps = 43/636 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ + +   ++L       + +        W  +   +I +  + Y      E +    
Sbjct: 110 RDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNI-FHYLGYTGVLCEENVQNL- 167

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKIV--------RVLNS 285
           AI +  +L  EE ++  +       ++   E++S     N + + +         R   S
Sbjct: 168 AIEKYVELIVEEDRQSFMEWCRVNEKELNMESISYRVRLNGEIFYMRIQTYLREQRSDGS 227

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           F   G   +++      + +      ++N   +I     +  + F NR F     +    
Sbjct: 228 FNIEGYIQNITDIQHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF-----LYNHG 282

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---------N 396
           ++ N    +L  +  +A+        + W E    V     ++    H            
Sbjct: 283 ISENEDISQLKIYNVAADM----PTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAYE 338

Query: 397 GQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPD 453
           G   +V  T++    + W F  +++ ++  E +   L ++   TI++L  G+ V     D
Sbjct: 339 GTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINND 396

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R    N    +     +N               +    + D           +  E K 
Sbjct: 397 FRYIYRNREAYN-RDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEGKD 455

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G + +L    +      L +   +    ++T+    +R L    E    +D +K++F+
Sbjct: 456 RNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKAEMSDSLKSAFL 515

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL L+N+ILDL+ +
Sbjct: 516 ANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQLINEILDLSKI 572

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G ++ ++    L++L  EV  +   +  +  + +   S  +      D+ R+ Q+ S 
Sbjct: 573 ESGTIEFSFGPASLHNLCREVHDAHIFRTPQ-GVSLVYESSDESLMIETDKNRVFQVISN 631

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA+ F+ +GS +       +   +F V + G+ I  +    VF RF    +  Q  G
Sbjct: 632 LIGNAVKFTKEGS-ISYGYKLADNQIVFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--G 688

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI +S +   GG +S++S     TT    +P
Sbjct: 689 TGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 118/365 (32%), Gaps = 50/365 (13%)

Query: 109 DTDLLSFENWLKFHHY-IKLSKATEKLRKEGQSFDLVAET-----QNDCAIKIEGRVSGS 162
           + D  SF  W + +   + +   + ++R  G+ F +  +T     ++D +  IEG     
Sbjct: 178 EEDRQSFMEWCRVNEKELNMESISYRVRLNGEIFYMRIQTYLREQRSDGSFNIEGY---- 233

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
                I ++  I               N I+      ++    ++     G I++AN  +
Sbjct: 234 -----IQNITDIQ-----------HRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF 277

Query: 223 KKN---TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK--NFCETVSTLEHG----- 272
             N   +E E I   K    +  +  +E               NF     +  +      
Sbjct: 278 LYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAY 337

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI--FDQNR 326
               Y +            A D+S+ I    Q+    +     ++NL   I +   + + 
Sbjct: 338 EGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINNDF 397

Query: 327 YLQFHNRSF--VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              + NR     +L++ D        ++ +    + +  K  E +   T  + +    + 
Sbjct: 398 RYIYRNREAYNRDLYKNDP----VGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEG 453

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            + + +   L + + + V          + +  ++T    ++ +  +  +   E  D L 
Sbjct: 454 KDRNGNMIIL-DKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEK-AEMSDSLK 511

Query: 445 EGVAV 449
                
Sbjct: 512 SAFLA 516


>gi|160889867|ref|ZP_02070870.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
 gi|156860859|gb|EDO54290.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
          Length = 896

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 110/520 (21%), Positives = 213/520 (40%), Gaps = 43/520 (8%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      + N T  I    ++  L F NR F E   I      T 
Sbjct: 233 GYIQNITDIQQRRNDINLLTHAIDNSTEDIYSAHEDGTLIFGNRCFKERHGIGNTQDITK 292

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----------NGQT 399
               +L  + R           K+WKE    V +   +     H P           G  
Sbjct: 293 LKIYDLPSYGRDK---------KSWKEFAECVKRGETSQGYIVHNPLPLRPEVLAIEGNA 343

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
             V  TS+   GT+W F  +++ ++  E +      +  + I++L  G+ V         
Sbjct: 344 YWV--TSDKGEGTVWTFGRDVSTRIRHEQQIKQFYLILDKIIENLPAGIVVKD------- 394

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N  F+ L++  E+          +      +Y      +  A  I      ++      
Sbjct: 395 INNNFKYLYRNRESYNREIPIQEALGKDDFDFYPLETAQEKRAQDIEIARTGKEMHWIAE 454

Query: 519 ELLSDS---VLEYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           E   +     L+   + + +       +    ++T+  + +R L    E    +D +K++
Sbjct: 455 ERDGNGNPIYLDKRKMKIESNDFSPILLNIEWDITEMEQMKRELLVAKEKAETSDRLKSA 514

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PL  I+GF+ ++  S   +   ++  Y E + +++  LL L+N+ILDL+
Sbjct: 515 FLANMSHEIRTPLNAIVGFSRIIAES---TDEEERLGYYEIVESNNERLLQLINEILDLS 571

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +++GI++   + + L+ L  E+  +   +  E  + +      +      D+ R+ Q+ 
Sbjct: 572 KIESGIVEFTITPVRLHPLCKEIHDAHIFRCPE-GVELIYEPSDENIVIDGDKNRIFQVI 630

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           S ++ NA  F++ G  +     R+     F V + G  I  D    VF RFV   +  Q 
Sbjct: 631 SNLIGNAFKFTTSGH-ISYGYRREGKYVAFHVTDTGMGIAPDKVDRVFERFVKVNNFAQ- 688

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGLSI ++ I   GG++S++S     TT    +P +
Sbjct: 689 -GTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLPLE 727



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 95/293 (32%), Gaps = 38/293 (12%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG----- 238
             ++  N I++     D+    ++   + G +++ N  +K+            +      
Sbjct: 240 DIQQRRNDINLLTHAIDNSTEDIYSAHEDGTLIFGNRCFKERHGIGNTQDITKLKIYDLP 299

Query: 239 ------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
                 +S K F E +K+   S   +  N       +      +Y +             
Sbjct: 300 SYGRDKKSWKEFAECVKRGETSQGYIVHNPLPLRPEVLAIEGNAYWVTSDKGEGTVWTFG 359

Query: 293 IDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            DVS  I    Q+   Y    +I+ NL   I + D        N +F  L+    ++   
Sbjct: 360 RDVSTRIRHEQQIKQFYLILDKIIENLPAGIVVKD-------INNNFKYLYRNRESYNRE 412

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVI---- 403
            P  + L +     +  P +   +   ++I       E H        NG  +++     
Sbjct: 413 IPIQEALGK--DDFDFYPLETAQEKRAQDIEIARTGKEMHWIAEERDGNGNPIYLDKRKM 470

Query: 404 -VTSNPRGGTIWMFE-NLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
            + SN     +   E ++T    ++ +         T  +++   + ++S  +
Sbjct: 471 KIESNDFSPILLNIEWDITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEI 523


>gi|150389840|ref|YP_001319889.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949702|gb|ABR48230.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 773

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 105/628 (16%), Positives = 242/628 (38%), Gaps = 54/628 (8%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
           +K + + L  ++   D+ G I++ N   K+  ET G  +++ +  S    + +  +  + 
Sbjct: 13  YKNVLEDLMDIILIVDKNGKIVYGN---KRAVETYGYTYEELVNLSVFDLRNQDIEEPVQ 69

Query: 255 SSALEKNFC----ETVSTLEHGNNKSYKIVRVLNSFGEAG----IAIDVSKEITVNDQLT 306
               +        +T    ++G     ++    +     G    I  D+S    +     
Sbjct: 70  EQLKQALLRGIEFKTYHYKKNGTKFPVEVRSRYSGEQSKGNVVSIIRDISHIDKIAKDAE 129

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
                L  L  AI  F ++  +   +++  E        +         ++ L    K+ 
Sbjct: 130 MFSVSLDILDDAIVTFTKDLKVSLWSKAAEEKLGYTKEEIVGQN-----IKILVPNEKIK 184

Query: 367 EQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRG---GTIWMFENL 419
           E  N  ++  K N+    ++   HK+     N   + + V+   +P G   G + +++++
Sbjct: 185 EFENEIFEVRKGNVVERLETIRLHKNG----NAIDVSISVSPFYDPDGVLIGVLGVYKDI 240

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT- 478
           + + +L  +     +     ++    G+  +  +     S   ++ +    E  L+    
Sbjct: 241 SQRKELAKQLKRNEERWRYALEGGRFGIWDWDIENNKIFSADLWKEILGYNEGELNDTYE 300

Query: 479 ------HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--I 530
                 H  +      +    S G       I  F  + K            ++E+    
Sbjct: 301 DWMSKVHPEDFPYVKDKLNKHSRGEKY----IDEFRMKCKDNTYKYLRAKGQIIEWREDG 356

Query: 531 IPLPNAQTMLTFVNVT----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            PL    T+    +      +     + L    E    A++ K+ F+ ++S+E+R+P+  
Sbjct: 357 NPLRMMGTLEDITDRKIIEEELKEKYKQLELLKEEAENANKAKSQFLANMSHEIRTPMNG 416

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G   LL+++ +G   ++Q++Y+  +  S+  L  ++NDILD++ +++G  KLN     
Sbjct: 417 IFGVVQLLESTDVG---AEQNKYINMLKESTHTLAGIINDILDISKIESGTFKLNNEPFN 473

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L ++++ +   +    +   + +    D  +    + D  +L QI + ++SNA+ ++ +G
Sbjct: 474 LTEMISSIYHGLLVDGNAKGLEVGYYLDPNINPQVIGDELKLKQILTNLISNAVKYTEQG 533

Query: 706 ----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLS 759
                   +          F+VK++G  I +   + +F  F         + +G GLGL+
Sbjct: 534 FVSFRVNRISFDEHTEKIQFNVKDSGIGIKDGFKEKIFEDFSQEDSSTRKKYQGTGLGLA 593

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++   L  G +S  S     +     
Sbjct: 594 ISKNLALLMQGDISFESKLGEGSIFTFT 621


>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1191

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 125/709 (17%), Positives = 270/709 (38%), Gaps = 88/709 (12%)

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK- 187
           +A + LR    +     +  +   I              + SL  +   L       +K 
Sbjct: 96  RAMDSLRATASALMAQVDPDHPPLIDDS-----------LESLSELMGTLVRQKEDSQKD 144

Query: 188 ---LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
                  ++  K   D    +V   + AGDI++AN  +    +  G    + +G++ ++ 
Sbjct: 145 LQFALTDLANQKFALDQH-AIVSTTNAAGDIVYANDKF---CQLSGYSRGELLGQNHRMI 200

Query: 245 KEEIKKR-----MISSSALEKNFCETV-STLEHGNNKSYKIVRVLN------SFGEAGIA 292
              ++ +     + +  +  K +   + +  + G         V              I 
Sbjct: 201 NSGVQDKVYFTNLWAVISSGKVWRGEICNRSKSGQLYWVDATIVPLKDESGKPNMYIAIR 260

Query: 293 IDVSKEITVNDQLTHTYEILHNLTV---AIA----IFDQNRYLQFHNRSFVELWEIDLAF 345
            D++    +   +      L ++T     +     + ++ +   F N    E+  I +  
Sbjct: 261 TDITARKRMEVNIKAAEARLRHITNTLPGVVFQVHVSERGQRYTFVNDRVQEVRGISVQQ 320

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNG--QTLH 401
           L  +P +            L E  +W   ++ I+   +  E  +  +   LPN   + + 
Sbjct: 321 LLDDPKSAS-------RQVLEE--DWPLVRDGIYLAAQRREAWQGEYRIQLPNKTIRWIR 371

Query: 402 VIVTSNP----RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----G 451
             V+  P     G TI+  +++++T+  + + +   + +       H+   V  +    G
Sbjct: 372 TEVSPEPETGQDGATIFTGIWQDVTLAKEADERLREVTR-------HIPVAVFQYFVTKG 424

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              +I   + A  ++       ++  ++          R        +  AA      D 
Sbjct: 425 GLFKIAFMSHAAETMMGVRTEVMTTDSNAFLQCVHPQDRTSVAQSLVEASAAGAPWGMDF 484

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKAD 566
           R     T+E+     +     P   A   + +     +VT +      L +  +A   A+
Sbjct: 485 RMVNAQTMEIF---WVRGESQPQHKANGHIVWNGFLTDVTQARHISEELQKAKDAAEAAN 541

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+ ++S+E+R+P+  +IG T+LL  +   +L+++Q +Y+  + +SS  LL ++ND
Sbjct: 542 HAKSDFLANMSHEIRTPMNGVIGMTELLLDT---TLDAEQQEYLNIVKSSSEALLRVIND 598

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
           ILD + ++AG M +      L   + +  +++  + H+  + +       +  + V D  
Sbjct: 599 ILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAHDKGLEVVWDVAPDVPRALVGDPG 658

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARD---NGD--FIFSVKNNGSSIPEDMCKSVFN 740
           RL Q+   IL NA+ F+ +G  V L+  ++   NG      +V + G  IP +   S+F+
Sbjct: 659 RLRQVLVNILGNAIKFTERGEVV-LRIRQEVASNGKPLLHLAVSDTGIGIPANKLGSIFD 717

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            F        R   G GLGL+I    +   GG + + S+    +  +  
Sbjct: 718 AFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVESTPGQGSVFHFT 766


>gi|254187078|ref|ZP_04893593.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934761|gb|EDO90431.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 770

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 125 GARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 180

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 181 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 239

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 240 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 295

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 296 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 355

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 356 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 415

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 416 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 472

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 473 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 532

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 533 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 592

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 593 LHGGKVEAASAGKNRGTTFAITLPA 617



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +          ++ L  SL   V 
Sbjct: 86  AGRLMQLVTFAVVSCAICAIVVALKGSRRANDALRRREAGAR---HYYETLLQSLTQGVV 142

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 143 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 201

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 202 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 261

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 262 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 291



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/295 (9%), Positives = 76/295 (25%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++  F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 90  MQLVTFAVVSCAICAIVVAL-------KGSRRANDALRRREAGARH---YYETLLQSLTQ 139

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 140 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 199

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 200 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 250

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 251 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 306

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 307 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 361


>gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
 gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
          Length = 1410

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 167/382 (43%), Gaps = 22/382 (5%)

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            +  ++  E +           ID +   + V    G+I  +N      ++     LS   
Sbjct: 778  VKQRLQAEKRLKENETQLQGLIDSIPLMIMVTNHQGKILSANRQTLKNYQLNFQELSE-- 835

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                   + + Y +  D   +  A+       +K +           +  S++P+   Q 
Sbjct: 836  -----LNSTTFYSDPDDRQQILNALQAGEQIHQKIISMKDADGIPRKMMLSVLPIHFNQQ 890

Query: 539  ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
               +   +++T+ ++ E+ L +  E    A + K+ F+ ++S+E+R+P+  IIGFT+LL 
Sbjct: 891  PANLSIAIDLTERIQFEKELQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLN 950

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                     +  +Y+  I A+   LL L+NDILDL+ ++AG M L+   +  + L +E+ 
Sbjct: 951  EQV---TEPRLKRYIRTIQAAGKTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIG 1007

Query: 656  QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q     +    +   V  D  L    + D  RL QI   +L NA+ F+ +G   +  +A 
Sbjct: 1008 QIFMINIQRKGLDFLVDIDKTLPEGLLLDGVRLRQILFNLLGNAVKFTEQGYVKLKVSAC 1067

Query: 715  DNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFIN 766
            D        D +  V + G  IPED    +FN F    ++   +  G GLGL+I +  +N
Sbjct: 1068 DVDEHHSKLDILIQVSDTGIGIPEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVN 1127

Query: 767  LHGGHVSISSSDEGVTTINCRI 788
            + GG + + S+    TT N  I
Sbjct: 1128 MMGGDIWVESTPGQGTTFNLLI 1149



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 64/158 (40%), Gaps = 11/158 (6%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
                 +  E+ +     K+L  + +  + L DS+  ++   +  G IL AN   ++  +
Sbjct: 768 FFWNRRLTKEVKQRLQAEKRLKENETQLQGLIDSIPLMIMVTNHQGKILSAN---RQTLK 824

Query: 228 TEGIVFQKAIGESRKLF--KEEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVL 283
              + FQ+    +   F    + +++++++    +   + + +++  +   +   +  + 
Sbjct: 825 NYQLNFQELSELNSTTFYSDPDDRQQILNALQAGEQIHQKIISMKDADGIPRKMMLSVLP 884

Query: 284 NSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTV 317
             F +      IAID+++ I    +L    E   + + 
Sbjct: 885 IHFNQQPANLSIAIDLTERIQFEKELQQAKEQAESASQ 922


>gi|291566313|dbj|BAI88585.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 655

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 125/652 (19%), Positives = 238/652 (36%), Gaps = 58/652 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-----------Y 222
           +  E+A+     + L     + + L +++  LV  +D  G  L AN +           Y
Sbjct: 23  LKQEIADRLRVEEALRASSELLQTLINAIPDLVCFKDSQGRWLEANQAVLDLLQLNKIDY 82

Query: 223 KKNTETEGIVFQKAIGE----SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           +  T+ E     K +       + L   + K              E +     G  + Y 
Sbjct: 83  RGKTDAEIFDIIKHVNALSCYQKILLDSQCKDEKAWQLQKVYQEEEKIRQ-NDGILRIYD 141

Query: 279 IVRVLN------SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           +++V          G   +  D++ +            ++ +   AI     +  +   N
Sbjct: 142 VMKVPLFTATGVRKGLVILGRDITAKKQAEADYIRLASMVESSEDAIIGNTLDGIIVSWN 201

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
               +++         +P          S   LPE+ N         +     + ++   
Sbjct: 202 EGAKQIYGYSAVEAIGSPI---------SMLALPERPNEMPRILTSITAQGGIDHYETIH 252

Query: 393 HLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              +G  + V +T +P         G   +  +++ +  +E     L       +D   E
Sbjct: 253 VRQDGANIDVSLTISPIKDALGQITGISMIARDISYRKRIECTLEQLRHQNELILDSAGE 312

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA--I 503
           G+     DG+I   NPA   +   +   L      +     C          D      I
Sbjct: 313 GICGLNRDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPI 372

Query: 504 ITSFDDE--RKSLQGTLELLSDSVL--EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             + +D   R    G       ++L  EY   P+     ++  V     +   +A+    
Sbjct: 373 FATLEDGKVRYVTDGVFWRKDGTILPVEYVSTPMRQEGAIIGAVITFKDITERQAM---- 428

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                 +++K+ F+  VS+ELR+PLT+I G   LL +  L S   K  + ++    +   
Sbjct: 429 ------EKMKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPQKSERMLDIAMFNCDR 482

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ LVNDILDL  + +G + +    + + DL+ +    +     +  + + V+       
Sbjct: 483 LMRLVNDILDLERMHSGQLPMEKHWVNVADLMIQAADEMLPVAEKAGVDLCVV--PLEFK 540

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + DR R++Q+ + +LSN++ FS     +   A       + SV++ G  IP D  +++F
Sbjct: 541 VMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENHVLISVRDRGRGIPPDKIETIF 600

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF  V  +   Q  G GLGL+I  S +  HGG +   S     +T    +P
Sbjct: 601 GRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGDGSTFFVSLP 652


>gi|167829786|ref|ZP_02461257.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 9]
          Length = 766

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 121 GARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 176

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 177 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 235

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 236 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 291

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 292 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 351

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 352 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 411

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 412 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 468

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 469 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 528

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 529 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 588

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 589 LHGGKVEAASAGKNRGTTFAITLPA 613



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +          ++ L  SL   V 
Sbjct: 82  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAGAR---HYYETLLQSLTQGVV 138

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 139 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 197

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 198 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 257

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 258 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 287



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 86  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGARH---YYETLLQSLTQ 135

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 136 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 195

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 196 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 246

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 247 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 302

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 303 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 357


>gi|82702620|ref|YP_412186.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410685|gb|ABB74794.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 696

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 100/507 (19%), Positives = 200/507 (39%), Gaps = 20/507 (3%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           K   +++ L+     + +    I + D+  ++  +N  ++++W+I L  +     + +L 
Sbjct: 40  KTKQLDESLSILRATIESTADGILVTDEYGHMLRYNERYLQMWQIKLPDIVELHQHRQLQ 99

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRGGT 412
           +   S   L +   +    E I+  +   ET+ D   L +G+       +    +   G 
Sbjct: 100 KL--SCKYLADPKQYLERIEEIYDAW-PPETY-DLLELTDGRIFERYSKIQYAEDLCVGR 155

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +W F ++T +   E       +      + + + +     DG +   N  ++        
Sbjct: 156 VWSFRDITARKHAEEALQESTERLHFMAEAMPQKIFTARADGAVDYFNQQWKDYTGLARE 215

Query: 473 RLSPGTHIRNI----AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL---ELLSDSV 525
           ++     I+ I    A  C R +  S        +   F     + +  L   +   D+ 
Sbjct: 216 KMQGWEWIKLIHPDDAPECVRRWQHSLNTGEHLQMECRFRQANGTYRWHLLQAQARRDTK 275

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
              S+    N           +  +             +A+ IK+ F+  +S+ELR+PL 
Sbjct: 276 GYISMWVGSNTDIDTLKRADEEKKQLLENERIARSEAERANRIKDDFLATLSHELRTPLN 335

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G++ L+    +   N    + +E I  ++     L+ D+L+++++ +  ++L+    
Sbjct: 336 AILGWSQLILQGTMK--NEDIQRGLETIERNARAQNKLIEDLLEMSSIISNKIRLDMQEW 393

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  +     +S+A       I I+   D   G  + D  RL QI   +LSNA+ F+  G
Sbjct: 394 DLGAIAEAAVESVAPAAEAKGICIRRTIDATAGRVLGDNHRLQQIIWNLLSNAVKFTPDG 453

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
            TV +   R        VK++G  I  +    VF+RF            G+GLGL+IV+ 
Sbjct: 454 GTVEVIVERAASQLRVIVKDSGVGIKPEFLAYVFDRFRQADSSLTRNHGGLGLGLAIVKQ 513

Query: 764 FINLHGGHVSISSS-DEGVTTINCRIP 789
            + LHGG V   S  +    +    +P
Sbjct: 514 LVGLHGGTVCAESKGEGQGASFCVTLP 540



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 8/150 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D   + +  + +   TI+  ++G+ V    G +   N  +  +W+ +   +      R +
Sbjct: 39  DKTKQLDESLSILRATIESTADGILVTDEYGHMLRYNERYLQMWQIKLPDIVELHQHRQL 98

Query: 484 AATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNA---QT 538
                +Y  +   + +    I  ++  E   L   LEL    + E YS I          
Sbjct: 99  QKLSCKYLADPKQYLERIEEIYDAWPPETYDL---LELTDGRIFERYSKIQYAEDLCVGR 155

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI 568
           + +F ++T    AE AL E  E L    E 
Sbjct: 156 VWSFRDITARKHAEEALQESTERLHFMAEA 185


>gi|254296534|ref|ZP_04963990.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 406e]
 gi|157806537|gb|EDO83707.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 406e]
          Length = 770

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 125 GARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 180

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 181 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 239

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 240 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 295

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 296 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 355

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 356 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 415

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 416 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 472

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 473 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 532

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 533 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 592

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 593 LHGGKVEAASAGKNRGTTFAITLPA 617



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +          ++ L  SL   V 
Sbjct: 86  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAGAR---HYYETLLQSLTQGVV 142

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 143 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 201

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 202 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 261

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 262 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 291



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 90  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGARH---YYETLLQSLTQ 139

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 140 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 199

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 200 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 250

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 251 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 306

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 307 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 361


>gi|226199333|ref|ZP_03794893.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|225928740|gb|EEH24767.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pakistan 9]
          Length = 769

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 124 GARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 179

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 180 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 238

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 239 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 294

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 295 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 354

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 355 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 414

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 415 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 472 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 531

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 532 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 591

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 592 LHGGKVEAASAGKNRGTTFAITLPA 616



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +          ++ L  SL   V 
Sbjct: 85  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAGAR---HYYETLLQSLTQGVV 141

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 142 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 200

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 201 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 260

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 261 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 89  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGARH---YYETLLQSLTQ 138

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 139 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 198

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 199 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 249

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 250 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 305

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 306 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|330831029|ref|YP_004393981.1| Virulence sensor protein BvgS [Aeromonas veronii B565]
 gi|328806165|gb|AEB51364.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565]
          Length = 1413

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 104/515 (20%), Positives = 208/515 (40%), Gaps = 43/515 (8%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             E  +N+QL     +L++L   +A+ D  + +   N+++ +      AFL    S++EL 
Sbjct: 543  AEDKLNEQLLFVQTLLNSLPTMVALRDSEQRITLCNQAYRD------AFLGAGSSSEEL- 595

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVT----SNPRG- 410
                    +PE L     +E         +      +L  +G   HVI       +P G 
Sbjct: 596  ------QNMPETLRNSVLEEERLVWQTGQDLEGAGSNLRADGTPCHVIYAKRPYRDPDGN 649

Query: 411  --GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-----DGRIKLSNPAF 463
              G + +  +++   + E +         +  D +  GV           GR   ++   
Sbjct: 650  MLGVLTVLTDVSRIKEAEERARQAENRLTQITDSMP-GVVYQYLWQGPGKGRFLYASQGA 708

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTL 518
              +       L        +         +     ++  +  A +      ER      L
Sbjct: 709  SEILGASRQELFNAESGCEVFGFTEEALQDFVSKVANHAETLAPLDLEVKVERPDGDRYL 768

Query: 519  ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            ++  + V +     + N        ++T   + E  L E      +A + ++ F+  +S+
Sbjct: 769  QVRGNFVRQEQQALILNG----VIQDITALKQQEYELREARAYAEQAMQARSRFLATMSH 824

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            ELR+P++ + G  +LL+ S+   LN  Q   V  +  S+  LL LVNDILD + ++AG +
Sbjct: 825  ELRTPISGMHGMLELLQMSE---LNDDQRFMVRNVVTSTNNLLYLVNDILDFSKIEAGQL 881

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSN 697
            +LNY +  L  ++ +  +  A   H   + + +  +  +  +   D  R+ Q+ S +L+N
Sbjct: 882  QLNYQSSRLQTVICDAIRGHAALAHNKGLNVVLEWEHHVPDWADIDGVRIGQVISNLLNN 941

Query: 698  AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVG 755
            A+ F+ +G  + ++ +  +     SV + G  I E+    +F  F    +    +  G G
Sbjct: 942  AVKFTEQGG-ITIRVSYLSEQLTISVSDTGIGIAEEKQALLFTPFEQVESDINRRFGGTG 1000

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            LGL+I E  +   GG ++++S     +     +P 
Sbjct: 1001 LGLAICEQLVCKMGGALTLTSKAGEGSCFRFTVPL 1035



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 88/304 (28%), Gaps = 30/304 (9%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           VSG        SL     ++A+  +   KL+  +   + L +SL  +V  RD    I   
Sbjct: 521 VSGLLVMFWARSL---RRQIAQRKIAEDKLNEQLLFVQTLLNSLPTMVALRDSEQRITLC 577

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN----- 273
           N +Y+      G   ++       L    +++  +     +       +    G      
Sbjct: 578 NQAYRDAFLGAGSSSEELQNMPETLRNSVLEEERLVWQTGQDLEGAGSNLRADGTPCHVI 637

Query: 274 --NKSYKIVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIF----D 323
              + Y+     N  G   +  DVS     E           +I  ++   +  +     
Sbjct: 638 YAKRPYRDPD-GNMLGVLTVLTDVSRIKEAEERARQAENRLTQITDSMPGVVYQYLWQGP 696

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
                 + ++   E+       L    S  E+  F   A +     ++ +   N      
Sbjct: 697 GKGRFLYASQGASEILGASRQELFNAESGCEVFGFTEEALQ-----DFVSKVANHAETLA 751

Query: 384 SSETHKDTWHLPNG-QTLHVIVTSNPRGGTIWM----FENLTVQVDLETKYNTLVKVQGE 438
             +        P+G + L V      +     +     +++T     E +         +
Sbjct: 752 PLDLEVKV-ERPDGDRYLQVRGNFVRQEQQALILNGVIQDITALKQQEYELREARAYAEQ 810

Query: 439 TIDH 442
            +  
Sbjct: 811 AMQA 814


>gi|298528782|ref|ZP_07016186.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512434|gb|EFI36336.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1037

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 126/720 (17%), Positives = 255/720 (35%), Gaps = 68/720 (9%)

Query: 115 FENWLKFHHYIKLSKATEKLRKEGQ------SFDLVAETQNDCAIKIEGRVSGSCAFLRI 168
           F +++          A  +L  + Q       F    +  +   I+   R  G   +   
Sbjct: 189 FLDFVHPDDVESTVAAVSRLENQEQVLNYVNRFCC--KDGSYRWIEWRSRPLGRQIYAAA 246

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE- 227
             +      LA+     + L+      + + D     V   D    ++  N   +K    
Sbjct: 247 RDITEHKKVLAKLQESEQSLAR---TLQAIGDG----VISTDMDSRVVQMNPVAEKLCGW 299

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRV 282
            E     + + +  ++   + +  + +      +        +   L     + Y I   
Sbjct: 300 DEAEARGRLLSDVLRIVNADTRAVVDNPLQKVFATGHTLGLASHVMLLSRTGEEYHIADS 359

Query: 283 LNSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQF 330
                       G   +  DV++E    ++L  + E L          I  ++      +
Sbjct: 360 AAPIRDSHGNITGAVLVFRDVTREHAQAERLRTSEERLDRAMAVKNEGIWDWNLVTNETY 419

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHK 389
            +  +  +           P +        +    PE L   T         K+ +   +
Sbjct: 420 FDDRYYTMAGYSPNEF---PQHFSGW----AERVHPEDLQKATSAIEDCIAGKTETFDIE 472

Query: 390 DTWHLPNGQTLHVIVT-----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
             +   +G  + +         NP       I    ++T +   E       ++Q + + 
Sbjct: 473 FRFKHKDGSWIWIQGQGKIMERNPDDSPLRMIGTHTDITERKLAEEALLESEEMQRKILQ 532

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            + + +     +G I   N                G  + +          + +      
Sbjct: 533 AVPDLIVRTDLEGIITFVNELAYPGLSYIPQASIYGRSLFSFIDARDLPRAQENALKRLE 592

Query: 502 AIITSFD---DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
             I   +   +  + +    E+    V +   +P+     +    ++TD  R ++ L + 
Sbjct: 593 KNIGPQEYRLNFEEGISIDTEINGAVVYDKESMPV---GMVYVIRDITDRKRDKKELLKA 649

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E    A++ K+ F+ ++S+ELR+P   I+G   LL+T+   +L+ +Q +YV+    SS 
Sbjct: 650 KEQAEAANQAKSRFLANMSHELRTPFNGIMGMMQLLQTT---TLDEEQQEYVDMAIKSSQ 706

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKL 677
               L++DILDL++V+ G M +  S   L + L  +         E  + ++ +  D   
Sbjct: 707 RFARLLSDILDLSSVETGRMSIFNSEFDLGEALGSIHDIFDASAREKGVFLEYLPGDDVP 766

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFI--FSVKNNGSSIP 731
              + D  R+ QI   ++SNA+ F+ KG  V ++     A   GD    F+V + G  IP
Sbjct: 767 AKVIGDAVRVKQILITLVSNALKFTEKG-VVEIRLDALCAAKGGDVRIKFAVSDTGIGIP 825

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  K++F  F         + +G GLGLSIV+  + L  G++ I S     TT++  +P
Sbjct: 826 EDQLKNLFTPFEQLDGSYTRKHQGAGLGLSIVKRLVELMNGNIDIDSLPGEGTTVHVVLP 885



 Score = 78.4 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 128/410 (31%), Gaps = 56/410 (13%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE-----EIKK 250
           + L       V+     G  L AN +  K    +    Q+ I     +  E       + 
Sbjct: 19  QELLIKAPMGVFTSTPEGRFLTANPAMAKMFGYD--TPQEMIDSITDIASEFYAESSDRN 76

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSY----KIVRVLNSFGEA----GIAIDVSKEITVN 302
           +++    + +        L   +         ++ + +  G      G   D+++     
Sbjct: 77  KILQLLEVHQQVENFECRLIRRDGSWLWSSIDVLAMRDESGSITHYHGFITDITEHKQAQ 136

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW--EIDLAFLATNPSNDELLEF-- 358
           DQ+    E L                 + N S   L    +D  FL  NP  +++L +  
Sbjct: 137 DQIEKKSEELE---------------LYFNSSLDLLCIANVDGRFLRLNPEWEKVLGYTT 181

Query: 359 --LRSANKL----PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
             L     L    P+ +       +     +    + + +   +G    +   S P G  
Sbjct: 182 QELEGRMFLDFVHPDDVESTVAAVSRLENQEQVLNYVNRFCCKDGSYRWIEWRSRPLGRQ 241

Query: 413 IW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           I+    ++T    +  K     +    T+  + +GV     D R+   NP    L   +E
Sbjct: 242 IYAAARDITEHKKVLAKLQESEQSLARTLQAIGDGVISTDMDSRVVQMNPVAEKLCGWDE 301

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI- 530
              + G  + ++    +          L     T        L   + LLS +  EY I 
Sbjct: 302 AE-ARGRLLSDVLRIVNADTRAVVDNPLQKVFATGHTL---GLASHVMLLSRTGEEYHIA 357

Query: 531 ---IPLPNAQTMLT------FVNVTDSVRAERALTEKNEALRKADEIKNS 571
               P+ ++   +T           +  +AER L    E L +A  +KN 
Sbjct: 358 DSAAPIRDSHGNITGAVLVFRDVTREHAQAER-LRTSEERLDRAMAVKNE 406


>gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus
           Nitrospira defluvii]
          Length = 578

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 89/416 (21%), Positives = 162/416 (38%), Gaps = 22/416 (5%)

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           +   +TH  TW L +G  +        +   +  F  +      E             I+
Sbjct: 144 HTDGQTHPWTWALIHGGFI------LAQCAALLYFWRVNELAQDE--VRESEARTRMIIE 195

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
              + V      G I   N     ++       + G  +    +        +       
Sbjct: 196 TALDAVITTDATGTINGWNTQAELMFDVPRTE-AIGKPLTTYVSAACPASGSTPITPYAG 254

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEK 558
            +  +  + R  + G     +   +E ++  L    T        ++++  + E  L   
Sbjct: 255 LVPGAILNRRSEMLGLTYQGTSFPVEIAMSCLAAGGTQQFTIFVQDISERKQQEERLCRA 314

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A   K+ F+ ++S+E+R+P+  ++G T+LL T+    LN  Q +Y   +  S T
Sbjct: 315 KEAAEAASLAKSQFLANMSHEIRTPMNGVLGMTELLLTT---PLNDTQRRYAHTVHNSGT 371

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+++NDILD + ++AG + L Y    L  LL E       +  +  + + V     + 
Sbjct: 372 NLLHIINDILDFSKIEAGRLVLEYIPFGLRQLLTETIGLYHEQARKKGLALSVTMTPDIP 431

Query: 679 SF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDM 734
                D  RL QI + ++ NA+ F+  G TV +    D    G     V + G  IP   
Sbjct: 432 DMAHGDPHRLRQILTNLVGNALKFTETG-TVAVFVRPDEGRPGRVRIEVTDTGIGIPLQA 490

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F+ F         +  G GLGL+IV+  + + GG + ++S+    TT    I
Sbjct: 491 QEKIFDSFSQADGSMTRKYGGTGLGLAIVKQLVGMMGGQLGLTSTPGQGTTFWFTI 546


>gi|126456548|ref|YP_001077059.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106a]
 gi|167908208|ref|ZP_02495413.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167924404|ref|ZP_02511495.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei BCC215]
 gi|242313239|ref|ZP_04812256.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106b]
 gi|126230316|gb|ABN93729.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106a]
 gi|242136478|gb|EES22881.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106b]
          Length = 771

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 124 GARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 179

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 180 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 238

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 239 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 294

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 295 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 354

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 355 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 414

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 415 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 472 RIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 531

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 532 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 591

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 592 LHGGKVEAASAGKNRGTTFAITLPA 616



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +      +         SL   V 
Sbjct: 85  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAGARRYYETL---LQSLTQGVV 141

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 142 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 200

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 201 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 260

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 261 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 89  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGAR---RYYETLLQSLTQ 138

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 139 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 198

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 199 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 249

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 250 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 305

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 306 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|237509427|ref|ZP_04522142.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei MSHR346]
 gi|235001632|gb|EEP51056.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei MSHR346]
          Length = 771

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 124 GARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 179

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 180 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 238

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 239 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 294

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 295 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 354

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 355 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 414

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 415 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 472 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 531

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 532 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 591

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 592 LHGGKVEAASAGKNRGTTFAITLPA 616



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +          ++ L  SL   V 
Sbjct: 85  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAGAR---HYYETLLQSLTQGVV 141

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 142 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 200

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 201 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 260

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 261 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 89  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGARH---YYETLLQSLTQ 138

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 139 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 198

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 199 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 249

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 250 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 305

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 306 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|134281863|ref|ZP_01768570.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
 gi|134246925|gb|EBA47012.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
          Length = 769

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 124 GARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 179

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 180 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 238

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 239 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 294

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 295 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 354

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 355 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 414

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 415 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 472 RIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 531

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 532 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 591

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 592 LHGGKVEAASAGKNRGTTFAITLPA 616



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +      +         SL   V 
Sbjct: 85  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAGARRYYETL---LQSLTQGVV 141

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 142 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 200

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 201 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 260

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 261 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 89  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGAR---RYYETLLQSLTQ 138

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 139 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 198

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 199 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 249

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 250 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 305

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 306 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1245

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 128/701 (18%), Positives = 258/701 (36%), Gaps = 62/701 (8%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
             R E +  +     ++   I +E  V+  C   RI     + +++ E     ++L    
Sbjct: 130 AARGESRKQEWTFVHKDGHQIPVELVVTAICEDGRITGYLSMVTDIRERKQAEEQLRQSE 189

Query: 193 SVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
             +  +F  +   V   R   G  +  N S+++ T                L++ E++ R
Sbjct: 190 QKYASMFHMMPDTVGVSRMSDGTFIEVNASFERATGWSKDELIGHSSLEIGLWEPEVRSR 249

Query: 252 ---MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG---IAIDVSKEI----TV 301
              ++ S    +N    ++T       +   +  +   GE     IA D+++++     +
Sbjct: 250 TLDIVRSQGRLENHEFVMTTKSGEKRHALMYMAPIYINGEPCLYFIARDITEQVRADQNL 309

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND----ELLE 357
            ++ T  Y +L  +   I + D        N  F + +    A +      D    EL +
Sbjct: 310 KNERTRLYTLLQTIPDLIWLKDPGGAYLMCNSRFEQFFGAKEAEIVGKTDYDFVDKELAD 369

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GT 412
           F R         + K       SV +   T     H    + L  I T          G 
Sbjct: 370 FFREH-------DQKALAAAGASVNEEWVTFAVDGHR---ELLETIKTPMRDEEGKLIGV 419

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEE 471
           + +  N+T   + +       +      +     + ++     ++   N AF   +    
Sbjct: 420 LGIARNITDIREAQENLRDSEQRYRHLFEQNPAPMLIYERGSFQLLAVNEAFLQHYGYTP 479

Query: 472 --------NRLSPGTHIRNIAATCS---------RYYNESDGWDLFAAIITSFDDERKSL 514
                     L P      I A  +          +++        + + TS D   K  
Sbjct: 480 EDVTQLRLPDLYPAEEKERIIALANSLVGHANAGEWHHCRKDGSRLSIVATSHDLIYKGH 539

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
              + +++D           N   +     V         L    ++ + AD+ K+ F+ 
Sbjct: 540 TARVAVITDITARKQAEEELNRYRLHLEELVKTRT---AELEAARDSAQAADQAKSEFLA 596

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  +IG   L   +    ++ KQ  Y+     ++  LL +++DILD + V+
Sbjct: 597 NMSHEIRTPMNAVIGMIHL---TLKTEMSPKQRDYLRKAGFAADSLLGIIDDILDFSKVE 653

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693
           AG ++L     +L+++L+ V   +  K HE  +   +    ++ +  + D  RL QI   
Sbjct: 654 AGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGLEFLLKIAPEVPAQLIGDPLRLGQILIN 713

Query: 694 ILSNAMDFSSKGST-VILKA--ARDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           + +NA+ F+ +G   V ++    R+N      FSV++NG  +  +    +F  F      
Sbjct: 714 LCNNAVKFTGQGEIFVFIEQLDCRENNRVMLRFSVRDNGIGMTPEQLDKLFTPFTQADAS 773

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             RR  G GLGL+I +  + L GG +   S  +  +     
Sbjct: 774 STRRFGGTGLGLAISKQLVLLMGGEIGAESIPDKGSVFFFT 814


>gi|265765483|ref|ZP_06093758.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254867|gb|EEZ26301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 919

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 122/656 (18%), Positives = 254/656 (38%), Gaps = 53/656 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAG-----DILW 217
            + SL  I S   E      +     S  + LF  +      +   RD AG      I  
Sbjct: 273 WLSSLANIISICIELRKAKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIAD 332

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA--LEKNFCETVSTLEHGNNK 275
           AN     ++E  G+     +G        + K ++             ET          
Sbjct: 333 AN---DLSSELIGMSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRS 389

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
           S+ IV          + +D ++ I  +  L  + +    I  N+   + I+D++  L   
Sbjct: 390 SHCIVYSPEKDEVVALFLDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDL 449

Query: 332 NRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           N   +E +        + + F        E+ E +R+ + +  +LN+          Y S
Sbjct: 450 NNWDMETFGVKDKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLNYS--FNKASDYYHS 507

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +++    +    +        N   G + +  + T ++D   +            D+  
Sbjct: 508 DKSNIIELYTKVSKLFDSQGNFN---GYVLINIDNTERIDAINRIRDFENFFLLISDYAK 564

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG--WDLFAA 502
            G A         LS   +      +    +    + ++     + + E     +D +  
Sbjct: 565 VGYAKLN-----LLSKRGYAIKQWFKNMGETEDIPLSSVVGVYDKMHPEDRQKVFDFYEK 619

Query: 503 IITSFDDERKSLQGTLELLS---DSVLEYSII------PLPNAQTMLTFVNVTDSVRAER 553
           ++   + + +S    L+  +    + +  +++           + +    ++T+    E 
Sbjct: 620 VLAGEEKDFRSEMRILKPGATNEWNWVRMNVVVTKFEPEHGEVEIIGINYDITELKETEA 679

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y++ +
Sbjct: 680 MLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTEDM---EERCEYIKIV 736

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +  + +    
Sbjct: 737 QENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDP 795

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                + ++DR RL Q+ S  ++NA+ F+S GS + +   +      F V + G  I ++
Sbjct: 796 HPSDCTVISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKE 854

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RFV         G GLGLSI +S +   GG + + S +   +     IP
Sbjct: 855 QLTHIFERFVKLNSFIH--GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 908


>gi|32474842|ref|NP_867836.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32445382|emb|CAD75383.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 865

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 118/611 (19%), Positives = 238/611 (38%), Gaps = 39/611 (6%)

Query: 208 HRDQAGDILWANISYKKN-----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
             D     + AN  Y +      +E  G   ++ +G+      +    R  S     ++ 
Sbjct: 91  IADTNERYVSANAVYAQQFHRSPSELLGGTIREMVGDDNYQSMKPHLDRAFSGEQSTQSV 150

Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGI---AIDVSKEITVNDQLTHTYE----ILHNL 315
            E  +       +     ++       G+   A+D++        L  + E    IL + 
Sbjct: 151 AEATTDGVTTYRQVSYDPQLSADGQVTGVMIVAMDITDSKRRESDLRESNEFSRAILESS 210

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFLRSANKLPEQLNWKTW 374
              + + ++   L   N   + L EID       P  N     +     +   + + K  
Sbjct: 211 PDCVKVLNEEGDLMSMNAKGMCLMEID----DLEPFRNQAWWSYWPEQAQGTVRKSLKDA 266

Query: 375 KENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +EN    +++   T K T    +     V   S      + +  ++T +   + +     
Sbjct: 267 RENGEGRFEAECPTVKGTPKWWDVIVTPVRRNSGEVKQFVAVSRDVTTRRLHKQELEERE 326

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           K     ID+++  V +   DG ++  N             +           +      E
Sbjct: 327 KRLHRVIDNMNSFVGIVDLDGVLQEVNQTAIDAASVAREDVIGRPFCEAFWWSHDDQVAE 386

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA----------QTMLTFV 543
                + AAI    +  R  +   +   S  +++ S +P+ +             + +  
Sbjct: 387 QVKSSVQAAI--RGETSRFDIAYRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVVASGF 444

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD    ER+L +  +A  +A+  K+ F+ ++S+E+R+P+T+I+G+ DL+   +   ++
Sbjct: 445 DVTDRYEFERSLKDATDAAEQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQ---ID 501

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                +V  I  +   LL L+NDILDL+ ++A  M++   ++ L  L+ +V   +  +  
Sbjct: 502 EDTRSHVATIRRNGAFLLGLINDILDLSKIEADHMEVFDESVNLIHLIEDVLSIMQVRAA 561

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN--GDF 719
           E ++ I+V   GK+     AD +RL QI   ++ NA+ F+  G   V ++A + +     
Sbjct: 562 EKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAGHVRVAVRAEQSDRRTRV 621

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F V + G  I ++  K +F  F            G GLGL I +  + + GG ++  S 
Sbjct: 622 HFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGEITARSR 681

Query: 778 DEGVTTINCRI 788
               +  +  I
Sbjct: 682 VNEGSCFSFCI 692


>gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
 gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
          Length = 587

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 170/392 (43%), Gaps = 29/392 (7%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           IVT +  G     F  +  Q+       N   +     +  +++GV     +G + ++NP
Sbjct: 222 IVTHDEIGELAMAFNQMGRQLQFHINALNQEKEQLASILSSMADGVITLNRNGEVLITNP 281

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +           +  +              +LF   +T  +++ ++++  L+  
Sbjct: 282 PADRFLQAWYYEQGQRDDLLPLP---------PQVNELFKKAVT--EEKEQAIEMALQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +  ++   + PL N + +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 NWVIV---MTPLYNGKVIRGAVAVLRDMTEERRL----------DKLRKDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  + G+++ +    + + + ++ +  + I   S  +  LVND+LDLA ++AG + L+
Sbjct: 378 TPIAMLQGYSEAIVDD-IAATDEEKKELAKVIYDESLRMGRLVNDLLDLARMEAGHLMLH 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +  + L   +  +         E  + + V  + +L     D  R+ Q+ + ++ NA+  
Sbjct: 437 HEQVPLKPYVERIIHKFQALAKEKGVHLLVEMNDELI-VSFDPDRVEQVLTNLIDNALRH 495

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           + +G  V +    D      SV+++GS IPE+    VF RF        R   G GLGL+
Sbjct: 496 TDEGGEVRVIVDADEEVVRISVQDSGSGIPEEDLPFVFERFYKADKARTRGRSGTGLGLA 555

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I ++ +  H G +++ S     TT    +P K
Sbjct: 556 IAKNIVEAHKGTITVHSKLGEGTTFTFTLPLK 587



 Score = 38.0 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 100/317 (31%), Gaps = 64/317 (20%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +N +      IL ++   +   ++N  +   N       +   A+       D+LL   
Sbjct: 248 ALNQEKEQLASILSSMADGVITLNRNGEVLITNPPADRFLQ---AWYYEQGQRDDLL--- 301

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GTIWM 415
                LP Q+N    K       ++ E          G+   +++T    G    G + +
Sbjct: 302 ----PLPPQVNELFKKAVTEEKEQAIEMALQ------GRNWVIVMTPLYNGKVIRGAVAV 351

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPD----------- 453
             ++T +  L+            +  T + +     + + + +A    +           
Sbjct: 352 LRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIVDDIAATDEEKKELAKVIYDE 411

Query: 454 ----GRIK-----LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA--- 501
               GR+      L+      L    E ++    ++  I         E     L     
Sbjct: 412 SLRMGRLVNDLLDLARMEAGHLMLHHE-QVPLKPYVERIIHKFQALAKEKGVHLLVEMND 470

Query: 502 AIITSFDDERKSLQGTLELLSDSVL-------EYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            +I SFD +R  ++  L  L D+ L       E  +I   + + +   V  + S   E  
Sbjct: 471 ELIVSFDPDR--VEQVLTNLIDNALRHTDEGGEVRVIVDADEEVVRISVQDSGSGIPEED 528

Query: 555 LTEKNEALRKADEIKNS 571
           L    E   KAD+ +  
Sbjct: 529 LPFVFERFYKADKARTR 545


>gi|126444327|ref|YP_001064150.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 668]
 gi|126223818|gb|ABN87323.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 668]
          Length = 771

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 124 GARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 179

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 180 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 238

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 239 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 294

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 295 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 354

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 355 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 414

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 415 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 472 RIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 531

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 532 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 591

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 592 LHGGKVEAASAGKNRGTTFAITLPA 616



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +          ++ L  SL   V 
Sbjct: 85  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAGAR---HYYETLLQSLTQGVV 141

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 142 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 200

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 201 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 260

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 261 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 89  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGARH---YYETLLQSLTQ 138

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 139 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 198

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 199 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 249

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 250 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 305

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 306 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 842

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 121/698 (17%), Positives = 258/698 (36%), Gaps = 103/698 (14%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           +L     + A    +  +      + K + + +          G +++A  +   +    
Sbjct: 14  ALQHAQEQNARLQERLAEAEKSERLLKSILEYIP---------GGLIYA-EAPDVSIRAV 63

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISS---------SALEKNFCETVSTLEHGNNKSYKIV 280
               Q+ IG   +  +      +  S         +  E      V  +  G +   +  
Sbjct: 64  SRYGQQLIGRQLESIEGRTGPEIQESWKLLHPDGVTQAEHEELPLVRAVAKGEDVREEEW 123

Query: 281 RVLNSFGE-------AGIAID--------------VSKEITVNDQLTHTYEILHNLTVAI 319
            +    GE       AG   D              + K   + ++L  + +    L ++ 
Sbjct: 124 VLFRPDGEKIPILIHAGPVRDEQGTIIGGLASLIGMEKRRQIEERLRESEKRFR-LAISA 182

Query: 320 AIFDQ-NRYLQF----HNRSFVELWEI----DLAFLATNPSNDELLEFLRSANKLPEQLN 370
           A     +R LQ      +  F+ ++ +     L FL   P+     +  R    L E   
Sbjct: 183 ARMGAYSRNLQTGQDHWSPEFLAIYGLGPDEPLPFLDGIPAAVHPEDRPR---VLAEARV 239

Query: 371 W--KTWKENIFSVYKSSETHKDT-WHLPNGQT-LHVIVTSNPRGGTIWMFENLTVQVDLE 426
           +  +T ++   + ++   ++ +  W +  G+    +    +       +  ++T +   E
Sbjct: 240 FFGRTVEQEFCNEHRIVRSNGEIRWVMILGKMEFDLAGKPH---VIYGLGMDVTERKQAE 296

Query: 427 TKYNTLVKV-------QGETIDHLSE--------------GVAVFGPDGRIKLSNPAFRS 465
                  +          E +  LSE              GV +  P+G+    +P+F  
Sbjct: 297 EALQQAKEKAEQQANELREALQRLSESEQRYRVMGETIPYGVWMCDPNGKATYVSPSFCK 356

Query: 466 LWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           L     E +   G   R +        ++  G           +    +  G +  +   
Sbjct: 357 LLDMTLEEQNDFGWTHRLVPEDVDPMMDKWIGCCCTGKPWE-HEHRIVAKDGGIRTVLSK 415

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            L         A  +   +++T+    E  L +  +A   A++ K+ F+  +S+E+R+P+
Sbjct: 416 GLPIRHENGKIACWVGVNLDITERKMMEEDLRQAKQAAEAANQAKSEFLASMSHEIRTPM 475

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG T+L    +     +K   Y++ +  S+  LL+++NDILDL+ ++AG ++L ++ 
Sbjct: 476 NGIIGLTELALMQE---PKAKIRDYLQMVKQSANSLLDIINDILDLSKIEAGRVELEHAD 532

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L D+L+ + +++        +      D  +  ++  D  RL QIF  ++ NA+ ++ 
Sbjct: 533 FDLRDMLDSLFETMRIGAERKGLSFSTAIDPGVPDWIKGDEGRLRQIFVNLIGNAIKYTE 592

Query: 704 KGSTVILKAARDNGD---------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            G  V ++   ++G                 + SVK+ G  IP+D    +F  F + A  
Sbjct: 593 AG-QVSVRVGVEDGRGAQDAGGRNTPERVCLVASVKDTGGGIPKDKLGRIFEPFDTGARS 651

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  G GLGL+I +  + L GG +++ S     +T + 
Sbjct: 652 AKYDGTGLGLAITKRLVELMGGRITVQSELGRGSTFSF 689


>gi|156741101|ref|YP_001431230.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232429|gb|ABU57212.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 1042

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/694 (17%), Positives = 265/694 (38%), Gaps = 75/694 (10%)

Query: 150  DCAIKIEGRVSG----SCAFLRILSLDGIYSELAETTLK-----------CKKLSNHISV 194
               +++ G  +G    + A  R         +L     +              L      
Sbjct: 349  GAPVQVRGTTAGTLCFASAMPRTTPFTDGDYDLIRLMAQWIGSEQDRLQTEAALRESEER 408

Query: 195  FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
            F +L       V    + G I+ AN +            +       +    E ++++  
Sbjct: 409  FALLASVTTEGV-IISEQGMIVDANAAAGTLFGVPPERLRGM--PVFEFTTPEGREKVAR 465

Query: 255  SSALEKNF-CETVSTLEHGNNKSYKIVRVLNSF----GEAGIAIDVSKEITVNDQLTHTY 309
            +     +   E ++    G     ++      +           D+S++      L  + 
Sbjct: 466  ALTTGYDRPYEVLARRIDGTLFPAEVTGRNIPYHGRTARVTTIRDISRQRLAEAALRASE 525

Query: 310  EILHNLTVAIAI-----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
            E    L   +             + + N ++  +W      L   PS   L E +     
Sbjct: 526  ERFRQLAENVNQVFWMSTPSLDQILYVNPAYERIWGRSCDSLYAQPS--SLFEAI----- 578

Query: 365  LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIW----MFE 417
            +PE  + +       + Y    + +      +GQ   ++  + P     G ++    + E
Sbjct: 579  VPE--DRERALALHRAEYARGYSIEFQILHTDGQQRWILTRAFPVINEAGAVYRIAAISE 636

Query: 418  NLTVQVDLETKYN---TLVKVQ-----------GETIDHLSEGVAVFGPDGRIKLSNPAF 463
            ++T +   E +     T ++VQ              +D  SE +A+  PDG     N  F
Sbjct: 637  DVTERKQAEAELRAAMTALEVQYQTADRAQSELRAILDASSEVIALLAPDGAFLTVNRRF 696

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
              ++    +++  G  + ++ A    ++ ++D  +++  ++++  D +   +  +  L  
Sbjct: 697  CDIFGVPADQVL-GRRLIDMRAEIRWFFGDAD--EVYERMLSALQDAQDVFREQVVQLRP 753

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
               E +I   P        +      R            R  + +K+ FV  VS+ELR+P
Sbjct: 754  QHRELAIFSAPVWTANQVHLGRLYVFR-------DVTHERAVERMKSEFVAMVSHELRTP 806

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            LT+I G+ D+L     G L  +  + ++ + +++  LL L+ND+LD++ ++AG + L+ +
Sbjct: 807  LTSIKGYIDMLLDGDAGPLAVEHQELLQIVKSNADRLLLLINDLLDMSRIEAGKLMLHRA 866

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVI-----SDGKLGSFVADRQRLLQIFSKILSNA 698
             + +  L+ +V  ++  ++   + R+ +       D        D  R+ QI + +LSNA
Sbjct: 867  PLDVRPLIRQVATALRPQLDAKHQRLNLDLSETPPDDAPPLMFGDAARVHQILTNVLSNA 926

Query: 699  MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            + ++ +G  + ++ + +      +V++ G  +  +  + +F+RF    +R  R   G GL
Sbjct: 927  IKYTPQGGEISVRLSVEPPWMCIAVQDTGIGLTPEEQERIFDRFYRVRNRATREASGTGL 986

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GL+I  S ++LH G +++ S     +T     P 
Sbjct: 987  GLAITRSLVDLHQGRITVESEAGRGSTFRICFPL 1020


>gi|34498098|ref|NP_902313.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
            12472]
 gi|34103953|gb|AAQ60313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum
            ATCC 12472]
          Length = 1436

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 129/796 (16%), Positives = 281/796 (35%), Gaps = 81/796 (10%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
            IRQ      +       L +  D +    +LL          DG+    E    L + + 
Sbjct: 273  IRQAARGDAERGLGRRRLMQALDGMEAGCALL----------DGRGSLQEASHGLCRLLG 322

Query: 105  IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA 164
              + D   ++  +        +L+ A       G+   L     +      +GR      
Sbjct: 323  RGRADLLGMNVADVCAPEDLSRLNAALA---CGGRMQRLRLRLMDG-----DGRAVDCEL 374

Query: 165  FLRILSLD-------GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD-IL 216
             L                 +L       +K +   +  + L  + D   W  D +   + 
Sbjct: 375  VLTPQEESMDGAAWLLQAEDLGPRQSSSRKAAGAQAQLEALAGAFDVGRWEWDASAQSLR 434

Query: 217  WANISYKKNTETEGIVFQKAIGESRK---LFKEE----IKKRMISSSALEKNFCETVSTL 269
            W      +     G+  ++ +   R    +  +E     K        + +   +     
Sbjct: 435  WD----ARMRALHGVGSEEKVDWPRWRGCVHPDEQAVWDKFWAEELGDVAEAGWDCRIVD 490

Query: 270  EHGNNKSYKIVRVL--NSFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVAI 319
              G  + +++   +  +  G A    G+  D         +L    E    +L  +   +
Sbjct: 491  GEGRLRWFRLFARVERDESGRALRADGLCWDAGNLQEGQAELRRVREELQTVLDAMPAMV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE-FLRSANKLPEQL--NWKTWKE 376
            + +D N +  F NR++++   +++A +        + +   R+     +       +  E
Sbjct: 551  SYWDGNLHNVFANRAYLDWMGLEMADVRGRHLRHVIGDERYRANQPYIQGALNGVASLAE 610

Query: 377  NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
                     E H    ++P+ Q   V        G      ++T+    + +   +    
Sbjct: 611  RCIIDLSGQERHLLAHYVPHWQQERVQ-------GFYVFVTDITLLKQAQRERQEVQARL 663

Query: 437  GETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRL-----SPGTHIRNIAATCSRY 490
               ID  S+  +      G I + +     +     + +         H+    A   R 
Sbjct: 664  QGIIDSASDFAIIATDLRGEISIFSAGAERMLGYRADEMVGLASPMILHLPEEVARRERE 723

Query: 491  YNES-----DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
             +E       G+D+F           +      +      +      +     +  FV +
Sbjct: 724  LSEELGRPVSGFDVFVEKTRGGGSITQEWTYLHKDGRRIPVSLVTTGIWQDGWLYGFVCI 783

Query: 546  TDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
               VRAE    R L    E   +A   K+ FV ++S+E+R+P+  ++G  +LL  ++L  
Sbjct: 784  AKDVRAEKEATRMLESAKEEAERASRAKSEFVANMSHEIRTPMNGVLGMLELLSNTRLDG 843

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +   Q  Y++ +  S   L++++NDILD + ++AG ++   +   L+++L  +   ++  
Sbjct: 844  V---QRSYLDMLQLSCRSLMSILNDILDFSKLEAGKLEAARARYDLDEVLGALAAMMSMH 900

Query: 662  MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD- 718
                 + + +  D  + +  V D  RL Q+   +  NA+ F+++G   V +   + +G  
Sbjct: 901  AARKRLELVIAVDPAVPAALVGDALRLQQVLVNLAGNAIKFTAEGEVAVSVGREKRDGRD 960

Query: 719  -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              +F+V++ G  +   + +++F+ F+       RR  G GLGL+I    + L GG + + 
Sbjct: 961  WLLFAVRDTGVGMEAPLLRTIFDPFIQADSSNTRRFGGTGLGLTISRRLVELMGGEIGVE 1020

Query: 776  SSDEGVTTINCRIPSK 791
            S     +     +P +
Sbjct: 1021 SRPGEGSRFWFALPLE 1036


>gi|312891906|ref|ZP_07751410.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311295639|gb|EFQ72804.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1082

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 132/643 (20%), Positives = 243/643 (37%), Gaps = 41/643 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD-ILWANISYKKNTETEGIVFQ 234
           +++ E      KL  +  V            W    +G  I W+N  +     T+    +
Sbjct: 305 TDITELKTTTSKLKENELVLYNEQIVAKIGSWWTHVSGRDISWSNNLFSILEVTDIPPDR 364

Query: 235 KAIGESRKLFKEEIKKRM----ISSSALEKNFCETVSTLEHGNNKSYKIVR---VLNSFG 287
             +     L   E +++      +      N  E       GN K +K+V    V +  G
Sbjct: 365 SKLNYYISLVHPEDREKAQLYFANLGDNPLNEFEHRLITPKGNLKYFKVVSGYPVKDGQG 424

Query: 288 ----EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR-YLQFHN----RSFVEL 338
                AGI  D++  I  +  +      L  +  AIA     R  +  +N         +
Sbjct: 425 KVVKMAGIVQDITDSILAHKTIRKNEAELMQV-QAIAKIGGWRWDIILNNLAWSDEMYRI 483

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT----WHL 394
           +E+D   +        LL F+   ++      +K   + + S  +      +       L
Sbjct: 484 YELDKEQVKHEDHFKLLLSFVHPDDRPNVAGIFKDHLKIVRSFVEYRIITPEGKLKYLSL 543

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
             G+TL            +   ++ T +  +E  +          ++ ++         G
Sbjct: 544 IVGKTL---AKDGAIKSILGTLQDQTDRKKIEFDFERAENKYKNVLETVNLAAVTLDKQG 600

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            I   N     +   ++  L       N + A     + +    D F A  TS    R  
Sbjct: 601 DIVFCNKHLADIIGYDKVDLIGMNWADNFVPAKLQDQFRQWLDSDSFYAQHTSPIICRNG 660

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            Q  +   +    +     +   +T     ++TD  +A  AL    E   K+   K+ F+
Sbjct: 661 KQRIISWKNTVTHDEFGKIV---ETTSIGEDITDIKKAREALIIAKENAEKSSRFKSEFL 717

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  +IG T+LL          +Q +Y+  +  SS  LL L+NDILD   +
Sbjct: 718 SIMSHEIRTPMNAVIGTTNLLLQDNPA---PRQLEYLNTLRFSSNNLLELINDILDYNKI 774

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFS 692
           +AG ++L  +   +N L   + QS   K   N+  +++  D ++ +  + D+ RL Q+ +
Sbjct: 775 EAGKLELYKTPFNINKLAQNILQSFKNKAEANSSYLELKLDDRIPANLIGDQLRLGQVLN 834

Query: 693 KILSNAMDFSSKGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--N 745
            +LSNA+ F+  G TV LK        D     F +++ G  I  +    +F+ F    N
Sbjct: 835 NLLSNAVKFTRDG-TVFLKLELEQLRYDKVTIKFIIEDTGIGISPENIDKIFDPFTQEYN 893

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +    G GLGL+I +  I LH   + + S+    T  +  I
Sbjct: 894 STQSDYGGTGLGLAITKRLIELHNSTIKLVSNIGEGTQFSFSI 936


>gi|298530358|ref|ZP_07017760.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509732|gb|EFI33636.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1150

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 134/819 (16%), Positives = 292/819 (35%), Gaps = 84/819 (10%)

Query: 20  FSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQL--SKYHSLLT 77
           F   +A    +A ML    +  + L R    L K      S +  +  ++     +S   
Sbjct: 137 FQSALAFLSEMAAMLGDQGLAELRLRRTSRKLEKSEATFKSLVEHLPQRIFIKDLNSNYV 196

Query: 78  ENNCLTIVWDGKDETPEIIG----QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK 133
             N      D      EI G     LH      +   D       +     ++L ++   
Sbjct: 197 TCNQ-IYAGDVGLTPEEIPGKTDFDLHPEELARKYRRDD---HRVITQDAPLELEESY-- 250

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
               G S  L   T         G + G         + GI+ ++  +  +  +L     
Sbjct: 251 --SRGDS-SLWISTTKVPYRDESGNIIG---------VLGIFQDITRSKEQQAELKYKEQ 298

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQKAIGESRKLFKEEI 248
           + K + D+   L+      G + + N +Y     +   +  G VF   + +    + +E 
Sbjct: 299 LLKNIVDTQSELICRFLPDGTLTYVNPAYCRYFNRDEQDLLGRVFLPMVHDDDLQYVQEC 358

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFG----EAGIAIDVSKEIT-- 300
              +       +   +    L  G  +  +      ++  G       +  D+++     
Sbjct: 359 FSSLGPDRP--EITYQHRIRLPDGQIRWQEWTDRAFIDEQGKVFEYQAVGRDITEHRQAV 416

Query: 301 --VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-----SND 353
             + +       ++ +    I   D +  L + N ++ +++      L  +        +
Sbjct: 417 NSLQESEQRYRGLVESQNDLIVRVDPDNRLTYVNDTYCKVFGRTREELLGSSFTPLVHEE 476

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           ++ + L++   L         ++   +V      H +   L + Q   V +         
Sbjct: 477 DIEDTLKAMEDLKTPPYRAQMQQRAMTVDGWRWIHWEDSALLDQQGRIVEIQ-------- 528

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA----VFGPDGR-----IKLSNPAFR 464
            +  ++T     +       K      ++   G+A    +    GR        +NPAF 
Sbjct: 529 GVGRDITDLKKAQEDLQQSEKNFRLIFENSPVGMATHEILLDEHGRPVDYIFLDANPAFE 588

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           +        ++       +    +  + ++     F+    +F +    L        + 
Sbjct: 589 THTGLSAQEVTGRRATEVLPGIENSSFIDTYAQVAFSGKTANFQEFSPPL--------NR 640

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
               S   + + Q   +F+++T+  +  R L    EA   A + K++F+ ++S+E+R+P+
Sbjct: 641 HFMISAYQMAHGQFAASFIDITELEKTRRELVRAKEAAEAASQAKSTFLANMSHEIRTPM 700

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF  +L+     +L    +++V+ IS ++  LL+++NDILD++ ++AG ++ N   
Sbjct: 701 NAILGFAQILERD--STLGPDHARHVQSISRNADHLLSILNDILDMSRIEAGQIEHNPRD 758

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSS 703
             L+    +++     +     + +    +G L     AD   L QI   +L NA  F+S
Sbjct: 759 FNLHQTFEDLELMFIPRAVSKGLELTFEKNGSLPRAGHADPGMLRQIMVNLLGNACKFTS 818

Query: 704 KGSTVILKAARDNGDFI----------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +G      +A  N +              V+++G  I  +    +F+ F          G
Sbjct: 819 QGEVTFRISAEKNSEACGTGQGGFTLNVQVQDSGPGIDPEEMDRIFDPFHQGGRDPGEGG 878

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGL I   +  + GG +S+S   E  +    ++P ++
Sbjct: 879 TGLGLHISRKYARIMGGDLSVSPHTEKGSLFCLQVPVQQ 917


>gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 729

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 162/373 (43%), Gaps = 15/373 (4%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            + +     + +   +D L+E V    P   I  +N A     K +   L     +R + 
Sbjct: 349 AQQELKAQEREKKVLLDSLNELVIFVNPQLYIIWANKAALEFMKID---LQKAVGLR-LN 404

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT----ML 540
            T       S   DL    +T          G      D V     IP+         +L
Sbjct: 405 DTLDISIPLSYSLDLEQVFMTG-----NKKSGEFSGKDDRVWIVQAIPVTEEGGKIIGVL 459

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                    +A   L ++ +    A+  K+ F+ ++S+ELR+PL +IIGF DLL     G
Sbjct: 460 EMCRDITESKAAETLLQEKQIAEAANRTKSEFLANMSHELRTPLNSIIGFADLLYEQVYG 519

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q + V  IS S   LLNL+N ILDL+ ++AG M+L+Y    L   LN +K  ++ 
Sbjct: 520 ELNERQLKSVGNISKSGKHLLNLINGILDLSKIEAGKMELSYKQFELASKLNIIKNLLSP 579

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                N++I++  D  L S  AD  R +QI   ++ NA+ FS +   V ++A +      
Sbjct: 580 IADRKNVQIEISIDSSLSSIYADEARFVQIMYNLVDNAIKFSYENGLVKIEARKKGDLVE 639

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  I  +    +F  F         Q +G GLGLS+V+  + LHGG +   S  
Sbjct: 640 ITVTDTGIGIKPEDQSKLFKPFSQVDSFLSKQFQGTGLGLSLVKQIVQLHGGDIWFRSKP 699

Query: 779 EGVTTINCRIPSK 791
              +T    IP +
Sbjct: 700 GEGSTFAFVIPIE 712


>gi|76817567|ref|YP_336536.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
 gi|254264305|ref|ZP_04955170.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
 gi|76582040|gb|ABA51514.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
 gi|254215307|gb|EET04692.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 769

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/497 (21%), Positives = 199/497 (40%), Gaps = 29/497 (5%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L +LT  + + D++  L + N S   L   D   +   P      +  R+ +       
Sbjct: 132 LLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAYDGRG-ARV 186

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQV 423
             +  E++    +S+          +GQ + +   ++P         G + +  +++   
Sbjct: 187 RASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDIS--- 243

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +E + +   ++    ++   + +   G + RI   NPA R ++  +E+          I
Sbjct: 244 -IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLI 302

Query: 484 AATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEYSIIPLPNA 536
           A    R +   +        I + D         R     +   + D       + L   
Sbjct: 303 APRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLR 362

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T           R+ R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L+ 
Sbjct: 363 DTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 422

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L  ++N+V  
Sbjct: 423 PVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTG 479

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V +   R +
Sbjct: 480 ALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHD 539

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V + G  I  +    VF  F     A    RRG+GLGLSIV     LHGG V  
Sbjct: 540 AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEA 599

Query: 775 SSSD-EGVTTINCRIPS 790
           +S+     TT    +P+
Sbjct: 600 ASAGKNRGTTFAITLPA 616



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +      +         SL   V 
Sbjct: 85  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAAARRYYETL---LQSLTQGVV 141

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 142 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 200

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 201 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 260

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 261 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/288 (8%), Positives = 79/288 (27%), Gaps = 29/288 (10%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +    R  ++L ++      +   +   L+    ++  +  
Sbjct: 89  MQLATFAVVSCAICAIVVALKGSRRANDALRRREAAARRYYETLLQSLT--QGVVVSDRH 146

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG--- 138
             + +        I         +P  D          +      L       R      
Sbjct: 147 GMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVR-ASALEHVLRSGRSASVEG 205

Query: 139 ------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
                     +         +   G ++G+   +R +S++   S                
Sbjct: 206 HWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS-------------AAS 252

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESRKLFKEEI 248
            + + L ++    +        I   N + ++    +    +      +   R L    +
Sbjct: 253 QMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPL 312

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 313 PESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|124382909|ref|YP_001025091.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10229]
 gi|254205387|ref|ZP_04911740.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei JHU]
 gi|147754973|gb|EDK62037.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei JHU]
 gi|261827034|gb|ABM99494.2| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10229]
          Length = 772

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 125 GARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 180

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 181 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 239

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 240 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 295

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 296 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 355

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 356 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 415

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 416 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 472

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 473 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 532

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 533 TVSLERHDAQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 592

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 593 LHGGKVEAASAGKNRGTTFAITLPA 617



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 18/190 (9%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +++L G          +          ++ L  SL   V   D+ G + + N S      
Sbjct: 106 VVALKGSRRANDALRRREAGAR---HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIG 162

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG------NNKSYKIVR 281
            +    +           +  +   + +SALE       S    G      + +   I  
Sbjct: 163 CDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAE 221

Query: 282 VLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
             +          G   I  D+S E   +        ++     AI     NR +   N 
Sbjct: 222 AASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNP 281

Query: 334 SFVELWEIDL 343
           +   ++  D 
Sbjct: 282 AARRMFGYDE 291



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 90  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGARH---YYETLLQSLTQ 139

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 140 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 199

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 200 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 250

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 251 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 306

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 307 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 361


>gi|167916549|ref|ZP_02503640.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 112]
          Length = 771

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/497 (21%), Positives = 199/497 (40%), Gaps = 29/497 (5%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L +LT  + + D++  L + N S   L   D   +   P      +  R+ +       
Sbjct: 132 LLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAYDGRG-ARV 186

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQV 423
             +  E++    +S+          +GQ + +   ++P         G + +  +++   
Sbjct: 187 RASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDIS--- 243

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +E + +   ++    ++   + +   G + RI   NPA R ++  +E+          I
Sbjct: 244 -IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLI 302

Query: 484 AATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEYSIIPLPNA 536
           A    R +   +        I + D         R     +   + D       + L   
Sbjct: 303 APRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLR 362

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T           R+ R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L+ 
Sbjct: 363 DTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 422

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L  ++N+V  
Sbjct: 423 PVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTG 479

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V +   R +
Sbjct: 480 ALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHD 539

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V + G  I  +    VF  F     A    RRG+GLGLSIV     LHGG V  
Sbjct: 540 AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEA 599

Query: 775 SSSD-EGVTTINCRIPS 790
           +S+     TT    +P+
Sbjct: 600 ASAGKNRGTTFAITLPA 616



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +      +         SL   V 
Sbjct: 85  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAAARRYYETL---LQSLTQGVV 141

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 142 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 200

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 201 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 260

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 261 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/288 (8%), Positives = 79/288 (27%), Gaps = 29/288 (10%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +    R  ++L ++      +   +   L+    ++  +  
Sbjct: 89  MQLATFAVVSCAICAIVVALKGSRRANDALRRREAAARRYYETLLQSLT--QGVVVSDRH 146

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG--- 138
             + +        I         +P  D          +      L       R      
Sbjct: 147 GMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVR-ASALEHVLRSGRSASVEG 205

Query: 139 ------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
                     +         +   G ++G+   +R +S++   S                
Sbjct: 206 HWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS-------------AAS 252

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESRKLFKEEI 248
            + + L ++    +        I   N + ++    +    +      +   R L    +
Sbjct: 253 QMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPL 312

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 313 PESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 664

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 162/369 (43%), Gaps = 16/369 (4%)

Query: 434 KVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           ++     + L  G A +   DGR  L N  F +      + +  G  I  +         
Sbjct: 290 RLVATVFESLP-GYAFYRDVDGRYLLVNQQFAAALGLRPDEV-IGRTIYELHEPARAQRY 347

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTD 547
            ++   L    ++ + DE     G  +L    ++    +P+ +    +T +     ++T+
Sbjct: 348 AAEDKQLIDGELSVWADEELIASGGRKL----IVYMQKVPVRDEAGRVTGIIGLAVDITE 403

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E  LTE   A   A++ K+ F+  +S+ELR+PL  I+GF+++L     G LN KQ 
Sbjct: 404 HKQLEVKLTEALAAAEAANQAKDQFLAAMSHELRTPLNAIMGFSEVLLDQHFGPLNDKQQ 463

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            YV  I  S+  LL ++ND+LDLA ++AG       T+ +  LL +    I  +    NI
Sbjct: 464 VYVNDILDSARHLLEIINDVLDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRAAAKNI 523

Query: 668 RIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            +++  D G       D +R  QI   +LSNA+ F+  G  + ++          SV++ 
Sbjct: 524 AVELAVDAGVPPQVQVDVRRFKQIMYNLLSNAVKFTPDGGAIKVECRDAGEWLEISVEDT 583

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS-SSDEGVTT 783
           G  I     + +F  F   +     +  G GLGL+I    + LHGG + +  S     + 
Sbjct: 584 GIGIAATHAEHIFEPFYQVSGNLTAKTPGTGLGLAITRQLVELHGGRIWLERSEPGQGSR 643

Query: 784 INCRIPSKE 792
               +P ++
Sbjct: 644 FTFVLPVRQ 652



 Score = 38.0 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
             +F+SL    ++RD  G  L  N  +       G+   + IG +     E  + +  ++
Sbjct: 293 ATVFESLPGYAFYRDVDGRYLLVNQQFA---AALGLRPDEVIGRTIYELHEPARAQRYAA 349

Query: 256 SALE------KNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVND 303
              +        + +       G      + +V          G  G+A+D+++   +  
Sbjct: 350 EDKQLIDGELSVWADEELIASGGRKLIVYMQKVPVRDEAGRVTGIIGLAVDITEHKQLEV 409

Query: 304 QLTH 307
           +LT 
Sbjct: 410 KLTE 413


>gi|15888325|ref|NP_354006.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15155995|gb|AAK86791.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 778

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 114/543 (20%), Positives = 216/543 (39%), Gaps = 68/543 (12%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A D+  E  +          L      +  FD +    F + S  E+  +        P 
Sbjct: 249 ADDIFAESNLR-----VETALSRGRCGLWDFDLSSRRMFWSGSLYEILGL--------PP 295

Query: 352 NDELLEFLRSANKL--PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IV 404
               L F  +A  +   +   ++  +       +  +      H   G  + +     ++
Sbjct: 296 KAAPLSFSDAARMMHSEDGNLYELARAVGCGNLRQIDQIFRMRHSK-GHYVWLRARAQVI 354

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            +N     I +  ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N  ++
Sbjct: 355 RTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMCNIHYQ 414

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             +   ++ L  GT    + A  +R         +    +   D    S    ++L  D 
Sbjct: 415 KAYGLPDSVLVAGTEKSTVYAAAAR--------PVVERRVADPDQSGLSRTTEVQLADDR 466

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE--------------------------- 557
            L+ +     +   +    ++T   R +  L +                           
Sbjct: 467 WLQINERRTRDGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELS 526

Query: 558 --------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQ 608
                   + E  + A+  K+ F+ ++S+ELR+PL  I+GF+++L+    G + + K S+
Sbjct: 527 DANANYLAEKERAQAANRAKSEFLANMSHELRTPLNAILGFSEILQNEMFGPVGSPKYSE 586

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  S   LLN++NDILD++ ++AG M++N  TI L  L+ E  +  A +  + NI 
Sbjct: 587 YARDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNIT 646

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++      L +   DR+ + QI   ILSNA+ F+  G  + L+        I ++ + G 
Sbjct: 647 VQQKVCAGL-TMQGDRRAMKQIMLNILSNAVKFTGDGGRIALRTHVHEAAMILTIADTGI 705

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP    + +   F  V + +   + G GLGL+I  S + LHGG + I S +   T +  
Sbjct: 706 GIPAQALQKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVKLHGGTMKIRSCEGRGTVVTI 765

Query: 787 RIP 789
            IP
Sbjct: 766 IIP 768



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 64/171 (37%), Gaps = 14/171 (8%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNR 333
           +++R  N     GIA+DV+++  +  +         + + + + A  ++D+N  L   N 
Sbjct: 352 QVIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMCNI 411

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            + + + +  + L        +  +  +A  + E          +    +S  +      
Sbjct: 412 HYQKAYGLPDSVLVAGTEKSTV--YAAAARPVVE--------RRVADPDQSGLSRTTEVQ 461

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           L + + L +       GG + +  ++T+    + +     +    TI  LS
Sbjct: 462 LADDRWLQINERRTRDGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLS 512



 Score = 45.7 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 97/297 (32%), Gaps = 16/297 (5%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           +  + +F  I+ +LL  +    + +++         E+   +     +          ++
Sbjct: 219 AMNVTLFAGISSILLVVLYAYYMQVKRARDADDIFAESNLRVETALSRGRCGLWDFDLSS 278

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH--YIKLSKATE--KLRK 136
                W G     EI+G   +   +  +D         +        +L++A     LR+
Sbjct: 279 RRMF-WSG--SLYEILGLPPKAAPLSFSDAA-----RMMHSEDGNLYELARAVGCGNLRQ 330

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
             Q F +     +   ++   +V  +    R++ +    +E      +  +    ++   
Sbjct: 331 IDQIFRMRHSKGHYVWLRARAQVIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAI 390

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
                  F++W  D+   ++  NI Y+K       V      +S               +
Sbjct: 391 ESTSEA-FVLW--DKNDRLVMCNIHYQKAYGLPDSVLVAGTEKSTVYAAAARPVVERRVA 447

Query: 257 ALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
             +++     + ++  +++  +I  R     G   +  D++      ++L  +   L
Sbjct: 448 DPDQSGLSRTTEVQLADDRWLQINERRTRDGGLVSVGTDITLLKRHQERLRDSERRL 504


>gi|53716107|ref|YP_106501.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 23344]
 gi|121596954|ref|YP_990599.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei SAVP1]
 gi|126446255|ref|YP_001079435.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10247]
 gi|167003184|ref|ZP_02268974.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei PRL-20]
 gi|254176005|ref|ZP_04882663.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 10399]
 gi|254203510|ref|ZP_04909871.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei FMH]
 gi|52422077|gb|AAU45647.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 23344]
 gi|121224752|gb|ABM48283.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei SAVP1]
 gi|126239109|gb|ABO02221.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10247]
 gi|147745749|gb|EDK52828.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei FMH]
 gi|160697047|gb|EDP87017.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 10399]
 gi|243061229|gb|EES43415.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei PRL-20]
          Length = 771

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 124 GARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 179

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 180 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 238

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 239 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 294

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 295 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 354

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 355 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 414

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 415 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 472 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 531

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 532 TVSLERHDAQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 591

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 592 LHGGKVEAASAGKNRGTTFAITLPA 616



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 18/190 (9%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +++L G          +          ++ L  SL   V   D+ G + + N S      
Sbjct: 105 VVALKGSRRANDALRRREAGAR---HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIG 161

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG------NNKSYKIVR 281
            +    +           +  +   + +SALE       S    G      + +   I  
Sbjct: 162 CDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAE 220

Query: 282 VLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
             +          G   I  D+S E   +        ++     AI     NR +   N 
Sbjct: 221 AASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNP 280

Query: 334 SFVELWEIDL 343
           +   ++  D 
Sbjct: 281 AARRMFGYDE 290



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 89  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGARH---YYETLLQSLTQ 138

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 139 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 198

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 199 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 249

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 250 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 305

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 306 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
 gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
          Length = 850

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 105/535 (19%), Positives = 217/535 (40%), Gaps = 45/535 (8%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G   +  D+S+  ++ D+L+   +    I     V + + D+   ++  N+S + + E +
Sbjct: 69  GMVIVFRDISRLRSIEDKLSFEEKKFKTIYETAPVGMLVVDEKLIIRDINKSMLNIIEKE 128

Query: 343 LAFLATNPSNDELL---EFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
           +         D +     F+ +      K  E L  +T  +   +  +  +   +   L 
Sbjct: 129 IDECIGRRFGDGIGCINSFIANGCGKSEKCFECLTAETLTDFFRNRTEFVDFEVEAEILL 188

Query: 396 NGQ----TLHVIVTSNPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           NG+       + VT+    G    + + +++T +  +E              D+    + 
Sbjct: 189 NGKPVLKWFKIYVTNTDIVGLNDCLLVIDDITEKKLMEDAIIRSRDYYISLFDNFPALIW 248

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
             G   +    N  + +               + + A  +   +  D          SF 
Sbjct: 249 RTGVGSKCDYFNNNWLAFTGRSIE--------QELGAGWTEGIHHDDLKKCKDVFWDSF- 299

Query: 509 DERKSLQGTLELL----SDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKN 559
           ++R +LQ    L     S   +     P+ +     A  +    ++++       L +  
Sbjct: 300 NKRGALQVEFRLRYNDGSYHWVRNIGHPIYDLKGEFAGYIGAVFDISEHKSMMEELNKSK 359

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A++ K+ F+ ++S+E+R+PL  ++G  DL   + +  LN++Q   +E   +    
Sbjct: 360 EEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDL---TLMSDLNNEQRDNLETAKSCVDS 416

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+N+ILD + ++AG ++L  S+  L DLL +  +    K  E+N+ +       L  
Sbjct: 417 LLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTVKPYKIKAKEHNVMVDYSISSDLPE 476

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMC 735
             + D+ R+ Q+ + +LSNA+ F+  GS    V +    ++   +F V + G  I ++  
Sbjct: 477 YIIGDQLRIKQVLNNLLSNALKFTEAGSINLKVDINTIDNDEFILFEVSDTGVGIADEDM 536

Query: 736 KSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +F  F    +    +  G GLGL+I +  I   GG + I S     +T +  I
Sbjct: 537 EKLFKSFSQVDNSYTRKYNGTGLGLAISKRLIEKMGGSIWIKSEKGIGSTFSFTI 591


>gi|327539948|gb|EGF26547.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 856

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 118/611 (19%), Positives = 240/611 (39%), Gaps = 39/611 (6%)

Query: 208 HRDQAGDILWANISYKKN-----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
             D     + AN  Y +      +E  G   ++ +G+      +    R  S     ++ 
Sbjct: 82  IADTNERYVSANAVYAQQFHRSPSELLGCTIREMVGDDHYQSMKPHLDRAFSGEQSTQSV 141

Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGI---AIDVSKEITVNDQLTHTYE----ILHNL 315
            E  +       +     ++       G+   A+D++        L  + E    IL + 
Sbjct: 142 AEATTDAVTTYRQVSYDPQLSADGQVTGVMIVAMDITDSKRRESDLRESNEFSRAILESS 201

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFLRSANKLPEQLNWKTW 374
              + + ++   L   N   + L EID       P  N     +     +   + + K  
Sbjct: 202 PDCVKVLNEEGDLMSMNAKGMCLMEID----DLEPFRNQAWWSYWPEQAQGTVRKSLKDA 257

Query: 375 KENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +EN    +++   T K T    +     V   S      + +  ++T +   + +     
Sbjct: 258 RENGEGRFEAECPTVKGTPKWWDVIVTPVRRNSGEVKQFVAVSRDVTARRLHKQELEERE 317

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           K     ID+++  V +   DG ++  N    +        +           +      E
Sbjct: 318 KRLHRVIDNMNSFVGIVDLDGVLQEINQTAINAASVAREDVIGRPFWEAFWWSHDDQVAE 377

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA----------QTMLTFV 543
                + AAI    +  R  +   +   S  +++ S +P+ +             + +  
Sbjct: 378 QVKSSVQAAI--RGETSRFDIAYRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVVASGF 435

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VTD    ER+L +  +A  +A+  K+ F+ ++S+E+R+P+T+I+G+ DL+   +   ++
Sbjct: 436 DVTDRYEFERSLKDATDAADQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQ---ID 492

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                +V  I  +   LL L+NDILDL+ ++A  M++   ++ L  L+ +V + +  +  
Sbjct: 493 EDTRSHVATIRRNGAFLLGLINDILDLSKIEADRMEVFDESVNLIHLIEDVLRIMQVRAA 552

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN--GDF 719
           E ++ I+V   GK+     AD +RL QI   ++ NA+ F+  G   V ++A + +     
Sbjct: 553 EKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAGHVRVAVRAEQIDLRTRV 612

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F V + G  I ++  K +F  F            G GLGL I +  + + GG ++  S 
Sbjct: 613 HFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGEITARSR 672

Query: 778 DEGVTTINCRI 788
               +  +  I
Sbjct: 673 VNEGSCFSFCI 683


>gi|254192371|ref|ZP_04898810.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei S13]
 gi|169649129|gb|EDS81822.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei S13]
          Length = 769

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 105/497 (21%), Positives = 198/497 (39%), Gaps = 29/497 (5%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L +LT  + + D++  L + N S   L   D   +   P      +  R+ +       
Sbjct: 132 LLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAYDGRG-ARV 186

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQV 423
             +  E++    +S+          +GQ + +   ++P         G + +  +++   
Sbjct: 187 RASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDIS--- 243

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +E + +   ++    ++   + +   G + RI   NPA R ++  +E+          I
Sbjct: 244 -IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLI 302

Query: 484 AATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEYSIIPLPNA 536
                R +   +        I + D         R     +   + D       + L   
Sbjct: 303 VPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLR 362

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T           R+ R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L+ 
Sbjct: 363 DTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 422

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L  ++N+V  
Sbjct: 423 PVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTG 479

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V +   R +
Sbjct: 480 ALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHD 539

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V + G  I  +    VF  F     A    RRG+GLGLSIV     LHGG V  
Sbjct: 540 AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEA 599

Query: 775 SSSD-EGVTTINCRIPS 790
           +S+     TT    +P+
Sbjct: 600 ASAGKNRGTTFAITLPA 616



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +      +         SL   V 
Sbjct: 85  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAAARRYYETL---LQSLTQGVV 141

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 142 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 200

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 201 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 260

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 261 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 37.6 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 25/288 (8%), Positives = 79/288 (27%), Gaps = 29/288 (10%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +    R  ++L ++      +   +   L+    ++  +  
Sbjct: 89  MQLATFAVVSCAICAIVVALKGSRRANDALRRREAAARRYYETLLQSLT--QGVVVSDRH 146

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG--- 138
             + +        I         +P  D          +      L       R      
Sbjct: 147 GMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVR-ASALEHVLRSGRSASVEG 205

Query: 139 ------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
                     +         +   G ++G+   +R +S++   S                
Sbjct: 206 HWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS-------------AAS 252

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESRKLFKEEI 248
            + + L ++    +        I   N + ++    +    +      +   R L    +
Sbjct: 253 QMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIVPRWLRNHPL 312

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 313 PESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|242240530|ref|YP_002988711.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
 gi|242132587|gb|ACS86889.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 1374

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 95/542 (17%), Positives = 190/542 (35%), Gaps = 61/542 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    +  + +    I+ +    I   D    +   N     L+          P  D +
Sbjct: 344 ADRKQLQQERSKLEMIVESSPDGIIGKDTQGIVISWNGGAERLFGYTREEAIGRPLVDLI 403

Query: 356 LEFLRSANKLPEQ-LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRG 410
                    +PEQ  + +          ++    +   H  +G  L V  T     +P G
Sbjct: 404 ---------IPEQFKDEEPDILRRVCAGETVSAFETLRHRKDGSELVVSATISPIRSPDG 454

Query: 411 GTIW---MFENLTVQVDLETKYNTLVK------------------VQGETIDHLSE-GVA 448
             I       ++++Q + E +   L                    +    +    E  + 
Sbjct: 455 RVIGVSKTVRDISLQKEAERRIRNLNSELEQQVRQRTTELAEVNLLFRTVLSAAHEFCII 514

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
               +G I   N     +    E+ +                    +  D +   I  FD
Sbjct: 515 ATDLNGVITFFNKGAVQMLGYSEDDVVGKATPAIFHDEDELASRRHELSDEYGEAIHGFD 574

Query: 509 ----------DERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAER 553
                      E +      +  S   +   +  + + Q      +    ++T   +A+ 
Sbjct: 575 VFTYKAQRNQSEHREWTYWRKDGSRFPVNLVVTAMRDEQDQLLGYLGVATDITRQRQAQD 634

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +      +A+E K  F+ ++S+E+R+P+  ++G   LL  +   +L  +Q  +    
Sbjct: 635 ALEKAKRQADEANEAKTMFLANMSHEIRTPMNAVLGMLQLLLRN---NLTPRQHAFASKA 691

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++T LL L+NDILD + +DAG ++L+      N ++  +    +  +   +I +    
Sbjct: 692 HIAATSLLGLLNDILDYSKIDAGKLELDPQPFDFNAVMQHLAIMFSGNLRAKSIELLFDL 751

Query: 674 DGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGS 728
           D +L    + D  RL Q+   +LSNA+ F+  G  ++    L           SV ++G 
Sbjct: 752 DPQLSPYMIGDELRLQQVLINLLSNAIKFTDHGDVIVKTVLLAGDATTQQMRISVTDSGI 811

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +    +F  F+       RR  G GLGL I +  +    G + + S+    +T + 
Sbjct: 812 GISPEQQTRIFGEFIQAEASTTRRYGGTGLGLVICKRLVEKMAGVLEVDSALGQGSTFSL 871

Query: 787 RI 788
            +
Sbjct: 872 TL 873



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 110/343 (32%), Gaps = 55/343 (16%)

Query: 29  TIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN-------- 80
           +I G++L  I   +++      L   +    +   ++  + SK   ++  +         
Sbjct: 317 SITGVILFGIGLSVVM----AMLVNTLKLRRADRKQLQQERSKLEMIVESSPDGIIGKDT 372

Query: 81  -CLTIVWDGKDET------PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK 133
             + I W+G  E        E IG+    + IP+   D     + L+     +   A E 
Sbjct: 373 QGIVISWNGGAERLFGYTREEAIGRPLVDLIIPEQFKD--EEPDILRRVCAGETVSAFET 430

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD-----GIYSELAETTLKCKKL 188
           LR      +LV           +GRV G    +R +SL       I +  +E   + ++ 
Sbjct: 431 LRHRKDGSELVVSATISPIRSPDGRVIGVSKTVRDISLQKEAERRIRNLNSELEQQVRQR 490

Query: 189 SNHIS----VFKVLFDSL-DFLVWHRDQAGDILWANISYKKNTETEGIVF---------- 233
           +  ++    +F+ +  +  +F +   D  G I + N    +                   
Sbjct: 491 TTELAEVNLLFRTVLSAAHEFCIIATDLNGVITFFNKGAVQMLGYSEDDVVGKATPAIFH 550

Query: 234 -QKAIGESRKLFKEEIKKRMI-------SSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
            +  +   R    +E  + +         +   +    E     + G+     +V     
Sbjct: 551 DEDELASRRHELSDEYGEAIHGFDVFTYKAQRNQSEHREWTYWRKDGSRFPVNLVVTAMR 610

Query: 286 F------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                  G  G+A D++++    D L            A  +F
Sbjct: 611 DEQDQLLGYLGVATDITRQRQAQDALEKAKRQADEANEAKTMF 653


>gi|254425959|ref|ZP_05039676.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188382|gb|EDX83347.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1186

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 107/504 (21%), Positives = 205/504 (40%), Gaps = 30/504 (5%)

Query: 295  VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            +S E  + +       IL     AI   D+ + +   N+   +++      +   P    
Sbjct: 699  ISTENALKESQQQLGNILKTAGDAIISIDEAQQIVMFNQGAEKIFGYAAKEIIGEPLEKL 758

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLH---VIVTSNPRG 410
            L +  R  +K     + +++     +  + +E  +D +    NG+       I  S  + 
Sbjct: 759  LPDAFRRVHK----QHIRSFGLASDASRQMAERSRDVFGQRQNGEEFPAEATISRSQTKT 814

Query: 411  GTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            G ++  M +++T +   E       +    T D L   +     D R +  N  +   + 
Sbjct: 815  GLLFTVMLKDITERRQSEAALRRSEEQLRLTTDALPVLICYVDADQRYRFINKTYADWFG 874

Query: 469  TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                 +  G  +R I      YY ++  +     I  +   +    +  +   +  V++ 
Sbjct: 875  QSVEAM-MGRLVREIIG--DSYYQQTQPY-----IEKALAGQAVQYELAIAGAAGEVIDL 926

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            S   +P+                   L       +  + ++N F+  VS+ELR+PLT+I 
Sbjct: 927  SATYIPDQGADGKVKGFFG-------LISDISDRKANERLQNEFISMVSHELRTPLTSIH 979

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            G   L+    +G  NSK+ + V     ++  L  L+ND+LDL  +++G + +      L 
Sbjct: 980  GSLKLMSM-MIGDSNSKEKELVAIALKNTDRLGRLINDVLDLERIESGRVSMTRQDCNLA 1038

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +L+    Q++A    E  + +K++ +    +   D  R++Q  + +LSNA+ FS   + V
Sbjct: 1039 ELMQHTAQAMAPMALE--LNVKLVVEPIDITISLDPDRIIQTLTNLLSNAIKFSPSRANV 1096

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            IL A     D +   K++G  IP D  + +F RF     R  RR  G GLGL+I +  + 
Sbjct: 1097 ILSATEREQDVLLCTKDSGPGIPADKTELIFERFQQVDSRESRRLGGTGLGLAICKQIVL 1156

Query: 767  LHGGHVSISSSDEGVTTINCRIPS 790
             HGG + + S  E  +     +P 
Sbjct: 1157 QHGGKIWVESELEKGSAFYFTLPK 1180



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 15/280 (5%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI- 103
           I++R S    + E+   L  I          + E   + +   G ++   I G   + I 
Sbjct: 695 IQERISTENALKESQQQLGNILKTAGDAIISIDEAQQIVMFNQGAEK---IFGYAAKEII 751

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ-SFDLVAETQNDCAIKIEGRVSGS 162
             P       +F   +   H      A++  R+  + S D+  + QN      E  +S S
Sbjct: 752 GEPLEKLLPDAF-RRVHKQHIRSFGLASDASRQMAERSRDVFGQRQNGEEFPAEATISRS 810

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
                +L    +  ++ E       L       ++  D+L  L+ + D      + N +Y
Sbjct: 811 QTKTGLL-FTVMLKDITERRQSEAALRRSEEQLRLTTDALPVLICYVDADQRYRFINKTY 869

Query: 223 KK--NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
                   E ++ +         + ++ +  +  + A +    E       G        
Sbjct: 870 ADWFGQSVEAMMGRLVREIIGDSYYQQTQPYIEKALAGQAVQYELAIAGAAGEVIDLSAT 929

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHN 314
            + +        G  G+  D+S              ++ +
Sbjct: 930 YIPDQGADGKVKGFFGLISDISDRKANERLQNEFISMVSH 969


>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 950

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 104/499 (20%), Positives = 203/499 (40%), Gaps = 47/499 (9%)

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             + + I +    + + F NR+   L+    A  A +  +D L + L  ++ L      K
Sbjct: 31  DAVPLGIFLLGAEQTVIFANRTAARLFARSPAACAGHALSDLLGQRLDLSDSLRATGIVK 90

Query: 373 TWKENIFSVYK-SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
                     + +S+   DT H    +  H+ ++  P   T+    +++ +V+LE   + 
Sbjct: 91  LPDGRFSPAGQTASDDESDTGHSTVIEWQHLRISGIPSVATLMTLRDVSREVELEKDRDR 150

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L +V  E+       +      G +  +NPA   +       L+    I           
Sbjct: 151 LAEVAEES----PYPIVEIDRHGNLVYANPAMADVLGRFGYDLAGKPEI----------- 195

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVR 550
                 D   A++ +   E ++L     +  ++   +++ P+P    +  F +++++   
Sbjct: 196 ----LPDNLPALVATCLLEGRTLTSQDVVRGEACYSWTLCPVPGHGLVRAFAIDLSEVHA 251

Query: 551 AERALTEKNEALRKADEI--------------KNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             RAL E  + LR+++                K+SF+  +++ELR+P+  +IG   LL  
Sbjct: 252 THRALNETADRLRESNRQLDQALQQAQTAARAKSSFLAMITHELRTPMNGVIGMASLLLE 311

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L  +Q  +   I       L+L+ND+L+ + ++AG ++L +    L   + +V  
Sbjct: 312 T---PLTEEQRSFTNTIQQCGEAQLSLINDVLECSKIEAGKLELEHLDFYLRTTVEDVLS 368

Query: 657 SIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             A +     + I  ++      +   D  RL Q+ +  + NA+ F+ +G  V L+A  +
Sbjct: 369 QFAERAQRKGLEITGLVHAAVPNALRGDPGRLRQVLTNFVGNAIKFTERGE-VTLQAFLE 427

Query: 716 NGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                     F V ++G  I ED+   +F  F        R   G GLGL+I +  + L 
Sbjct: 428 RDSPSEVIIKFEVTDSGIGISEDVQSRLFQAFTQADSSTTRKYGGTGLGLAISKQLVELM 487

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG V + S     TT  C 
Sbjct: 488 GGQVGLRSQPGQGTTFWCT 506



 Score = 44.5 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 14/179 (7%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TETEGIVFQKAIGE 239
              LS    V  +L+D++   ++       +++AN +  +          G      +G+
Sbjct: 16  AAGLSVPPEVLTLLWDAVPLGIFLLGAEQTVIFANRTAARLFARSPAACAGHALSDLLGQ 75

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI-------- 291
              L  + ++   I      +      +  +  ++  +  V        +GI        
Sbjct: 76  RLDL-SDSLRATGIVKLPDGRFSPAGQTASDDESDTGHSTVIEWQHLRISGIPSVATLMT 134

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
             DVS+E+ +        E+       I   D++  L + N +  ++       LA  P
Sbjct: 135 LRDVSREVELEKDRDRLAEVAEESPYPIVEIDRHGNLVYANPAMADVLGRFGYDLAGKP 193



 Score = 44.5 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 15/157 (9%)

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
           R+SG  +   +++L  +  E+        +L         + +   + +   D+ G++++
Sbjct: 122 RISGIPSVATLMTLRDVSREV--------ELEKDRDRLAEVAEESPYPIVEIDRHGNLVY 173

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-KS 276
           AN +        G      +    ++  + +   + +     +        +  G    S
Sbjct: 174 ANPAMADVLGRFGYD----LAGKPEILPDNLPALVATCLLEGRTLTS--QDVVRGEACYS 227

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
           + +  V         AID+S+    +  L  T + L 
Sbjct: 228 WTLCPVPGHGLVRAFAIDLSEVHATHRALNETADRLR 264


>gi|253568043|ref|ZP_04845454.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
 gi|251842116|gb|EES70196.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
          Length = 939

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 208/513 (40%), Gaps = 29/513 (5%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N   +I    ++  L F NR F+    I  +     
Sbjct: 259 GYIQNITDIQRRRNDINTLTHAINNAKESIFAAKEDGTLIFANRQFLHNHGIPESEEIGK 318

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI------ 403
                 L+    A  +  Q +W    ++I        +     H P+  + +++      
Sbjct: 319 ------LKIYEIAGDMNTQEDWHERCKDIL----HGGSRSFVAHHPSKVSKNILAYEGIM 368

Query: 404 --VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKL 458
             VT++    + W F  +++ ++  E +   L  +   TID+L  G+ V     D R   
Sbjct: 369 YNVTNDSGEESYWSFSHDISERLHYEAQIKRLNLIMDTTIDNLPAGIVVKEINNDFRYIY 428

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N                           +    E D           +  E K   G  
Sbjct: 429 RNRE-SYNRNLCIGESIGKNDFDYYPPEVAEKKREEDTLVATTGRGLHWTTEGKDKNGNE 487

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +L    +      L +   +    ++T+  + +R L    E    +D++K++F+ ++S+
Sbjct: 488 IILDKRKIRVDGDELSSPIIVSIEWDITELEKIKRELQTSKEKAEMSDKLKSAFLANMSH 547

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GF+ L+  S+      ++  + E + A++  LL L+N+ILDL+ +++GI+
Sbjct: 548 EIRTPLNAIVGFSHLIAESEN---KEERKTFYEIVEANNERLLQLINEILDLSKIESGII 604

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +   + I +N L  EV  +   +  +  +++             D+ R+ Q+FS ++ NA
Sbjct: 605 EFTSAPININSLCKEVHDAHVFRTPQ-GVQLIYEPSENGLVIETDKNRVFQVFSNLIGNA 663

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
             F+  GS +           +F V + G+ I  +    VF RF    +  Q  G GLGL
Sbjct: 664 FKFTKAGS-ISYGYKLVGNQIVFHVTDTGTGIEPEKIGRVFERFAKLNNYAQ--GTGLGL 720

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SI ++ +   GG +S+SS     TT    +P +
Sbjct: 721 SICKTIVERLGGEISVSSVVGQGTTFTFTLPYE 753



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 48/431 (11%), Positives = 127/431 (29%), Gaps = 52/431 (12%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           I QR+++ +++ +    L EI         +    + +             +G      +
Sbjct: 139 ITQRSNVKRQLEQVNRNLREIQKVAQIGQWMYNTRDNVF----------HYMGYTGVLCE 188

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA 164
                  L  ++ ++     +  +    K            E  N+ +I    RV+G   
Sbjct: 189 ESSRSISLEKYQEFIVEEDRLSFTSWCRK----------NEEGLNEESISYRVRVAGEIY 238

Query: 165 FLRILSLDGIYSELAETT----------LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           ++R+ +   +  EL   +             ++  N I+      ++    ++   + G 
Sbjct: 239 YMRLQAY--LRDELPNGSCNIEGYIQNITDIQRRRNDINTLTHAINNAKESIFAAKEDGT 296

Query: 215 ILWANISYKKN---TETEGIVFQKAIGESRKLFKEEIKKRMISS--SALEKNFCETVSTL 269
           +++AN  +  N    E+E I   K    +  +  +E              ++F     + 
Sbjct: 297 LIFANRQFLHNHGIPESEEIGKLKIYEIAGDMNTQEDWHERCKDILHGGSRSFVAHHPSK 356

Query: 270 EHG-----NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIA 320
                       Y +            + D+S+ +    Q+          + NL   I 
Sbjct: 357 VSKNILAYEGIMYNVTNDSGEESYWSFSHDISERLHYEAQIKRLNLIMDTTIDNLPAGIV 416

Query: 321 I--FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           +   + +    + NR       + +         D     +    +  + L   T +   
Sbjct: 417 VKEINNDFRYIYRNRESYN-RNLCIGESIGKNDFDYYPPEVAEKKREEDTLVATTGRGLH 475

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           ++     +   +   + + + + V          + +  ++T    ++ +  T  +   E
Sbjct: 476 WTTEGKDKNGNEI--ILDKRKIRVDGDELSSPIIVSIEWDITELEKIKRELQTSKEK-AE 532

Query: 439 TIDHLSEGVAV 449
             D L      
Sbjct: 533 MSDKLKSAFLA 543


>gi|53723264|ref|YP_112249.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei K96243]
 gi|52213678|emb|CAH39732.1| putative sensor kinase/response regulator fusion protein
           [Burkholderia pseudomallei K96243]
          Length = 771

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/497 (21%), Positives = 199/497 (40%), Gaps = 29/497 (5%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L +LT  + + D++  L + N S   L   D   +   P      +  R+ +       
Sbjct: 132 LLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAYDGRG-ARV 186

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQV 423
             +  E++    +S+          +GQ + +   ++P         G + +  +++   
Sbjct: 187 RASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDIS--- 243

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +E + +   ++    ++   + +   G + RI   NPA R ++  +E+          I
Sbjct: 244 -IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLI 302

Query: 484 AATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEYSIIPLPNA 536
           A    R +   +        I + D         R     +   + D       + L   
Sbjct: 303 APRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLR 362

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T           R+ R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L+ 
Sbjct: 363 DTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 422

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L  ++N+V  
Sbjct: 423 PVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTG 479

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V +   R +
Sbjct: 480 ALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHD 539

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V + G  I  +    VF  F     A    RRG+GLGLSIV     LHGG V  
Sbjct: 540 AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEA 599

Query: 775 SSSD-EGVTTINCRIPS 790
           +S+     TT    +P+
Sbjct: 600 ASAGKNRGTTFAITLPA 616



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +      +         SL   V 
Sbjct: 85  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAAARRYYETL---LQSLTQGVV 141

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 142 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 200

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 201 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 260

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 261 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 290



 Score = 38.4 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 25/288 (8%), Positives = 79/288 (27%), Gaps = 29/288 (10%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +    R  ++L ++      +   +   L+    ++  +  
Sbjct: 89  MQLATFAVVSCAICAIVVALKGSRRANDALRRREAAARRYYETLLQSLT--QGVVVSDRH 146

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG--- 138
             + +        I         +P  D          +      L       R      
Sbjct: 147 GMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVR-ASALEHVLRSGRSASVEG 205

Query: 139 ------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
                     +         +   G ++G+   +R +S++   S                
Sbjct: 206 HWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS-------------AAS 252

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESRKLFKEEI 248
            + + L ++    +        I   N + ++    +    +      +   R L    +
Sbjct: 253 QMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPL 312

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 313 PESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 360


>gi|303248431|ref|ZP_07334690.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490142|gb|EFL50061.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1117

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 109/658 (16%), Positives = 242/658 (36%), Gaps = 59/658 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  + A      + +      ++ L ++   L+   D  G +++ N ++ +     G+  
Sbjct: 327 VRRQTARLEELLEAVGQSERRYRELVENAACLIVRLDLLGRVVFCN-AWGQRV--FGLPL 383

Query: 234 QKAIGESRKLFKEEIKKRMISS----------SALEKNFCETVSTLEHGNNKS--YKIVR 281
           ++ +G                S          +       +     E+G      + ++ 
Sbjct: 384 ERMLGRDIDALGGAPGSDASESWGAILAVLAEAPDGARTLDRRHIGENGRAIWITWSVIA 443

Query: 282 VLNSFGE----AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNR 333
           + +  G       +  ++++       L  +      ++      I  +D      + + 
Sbjct: 444 LRDPKGLPTEFLCVGNEITQRKQAEKALAASEARYALVVRASNDGIWDWDLRTDAVYFSP 503

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTW 392
            ++E+  +    L+  P+  E  + +      P+ +     +    +  ++ S   +   
Sbjct: 504 RYLEILGLAPDALS--PTVTEWNQRIH-----PDDVEAVLRENRRCATGETDSFVVEYRM 556

Query: 393 HLPNGQTLHVIVT---SNPRGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              +G    ++     S    G +        ++T +   ET          +       
Sbjct: 557 RHADGSYRWIVGRGANSKDEKGQVVRMAGSHTDITRRKRDETALRESQDQLAKIFRLSPV 616

Query: 446 GVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           G+ V    D R+   N     ++  E+  +     +         + +  D   L   ++
Sbjct: 617 GLCVSAQRDSRVVDINENGARMFGYEKAAVIGRESLH-----LGVWPHPEDRRALVDELV 671

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEA 561
                  K L+   +  S  V+ YS +P+        +   V++T+    ER+L    EA
Sbjct: 672 AKGSIVGKELELLHQNGSTVVVLYSAVPIQAYGETCLLSVLVDITERKAIERSLRRAKEA 731

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K  F+  +S+E+R+P+  I+G    L       L  KQ+Q +  I  +   LL
Sbjct: 732 AEAANRAKTEFLSTMSHEIRTPMNTILGMAQALS---AADLPPKQTQAIRAIEIAGGSLL 788

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSF 680
            L+NDILDL+ +++G + +      +  L   +   +       +I +++  ++    S 
Sbjct: 789 TLLNDILDLSQIESGGLIIEEKPCDIGKLAGRIVDMMRPDAAAKDIALRLDLAEDLPPSV 848

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMC 735
                R+ Q+   +L NA+ F+ +GS ++L   R+            V++ G  IP D  
Sbjct: 849 SLSPDRIRQVLVNLLGNAVKFTHQGS-IVLAVGREAGPTGGDWLRLDVRDTGIGIPVDKL 907

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +F+RF        R   GVGLGL+I +  ++L GG + + ++    +T   R+P +
Sbjct: 908 PVIFDRFTQADATTSRLYGGVGLGLAISKKLVDLMGGSIRVETAVGQGSTFTVRLPLR 965


>gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 576

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 152/369 (41%), Gaps = 24/369 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE   N       + +  + +G+ V     R+ L NPA   L   +  + +    I 
Sbjct: 226 RITLEE-LNEKTAGVEDLLAGIVDGIIVVDAQRRVMLINPAACKLVGADSEKSAGKKLIS 284

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I             + L  A+  +  +     +  + L  + +L+  I P+ +    ++
Sbjct: 285 II-----------RNYQLDEAVKKTLKEGSPYFKEIVLLPREQILKVHITPIKDRAGRIS 333

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              +      E         L+  +++++ F+ +VS+ELR+PLT+I GF + L       
Sbjct: 334 GSVIVMRDITE---------LKHLEKLRSEFLANVSHELRTPLTSIKGFVETLLEGAYKD 384

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 +++  I A +  L  L+N+++DL+ ++   +KL    +   +L+NEV      +
Sbjct: 385 -PGLAKRFLSIIDAEAGRLYRLINNLMDLSKIETNQLKLRIEDVSAAELINEVIIIFENR 443

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + E  ++        L    AD   L Q+F  +L NA+ ++  G  V ++A        F
Sbjct: 444 LKEKGLKFSTDIPKDLPKVKADPDWLRQVFINLLDNAIKYTQSGGRVWIEAEPKGDVVEF 503

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  IPE+    VF RF            G GLGL+IV+  +   GG + + S   
Sbjct: 504 RVCDTGIGIPEEDLPRVFERFYRVDKARSPEMGGSGLGLAIVKHIVRAFGGDIRVESRVN 563

Query: 780 GVTTINCRI 788
             +     +
Sbjct: 564 QGSKFIFTL 572



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +N++     ++L  +   I + D  R +   N +  +L   D    +   +  +L+  
Sbjct: 230 EELNEKTAGVEDLLAGIVDGIIVVDAQRRVMLINPAACKLVGAD----SEKSAGKKLISI 285

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----GGTI 413
           +R         N++  +    ++ + S   K+   LP  Q L V +T          G++
Sbjct: 286 IR---------NYQLDEAVKKTLKEGSPYFKEIVLLPREQILKVHITPIKDRAGRISGSV 336

Query: 414 WMFENLTVQVDLETKYNTLV 433
            +  ++T    LE   +  +
Sbjct: 337 IVMRDITELKHLEKLRSEFL 356


>gi|298481017|ref|ZP_06999212.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
 gi|298273040|gb|EFI14606.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
          Length = 885

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 118/636 (18%), Positives = 249/636 (39%), Gaps = 43/636 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ + +   ++L       + +        W  +   +I +  + Y      E +    
Sbjct: 110 RDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNI-FHYLGYTGVLCEENVQNL- 167

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKIV--------RVLNS 285
           AI +  +L  EE ++  +        +   E++S     N + + +         R   S
Sbjct: 168 AIEKYVELIVEEDRQSFMEWCRVNERELNMESISYRVRLNGEIFYMRIQTYLREQRSDGS 227

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           F   G   +++      + +      ++N   +I     +  + F NR F     +    
Sbjct: 228 FNIEGYIQNITDIQHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF-----LYNHG 282

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---------N 396
           ++ N    +L  +  +A+        + W E    V     ++    H            
Sbjct: 283 ISENEDISQLKIYNVAADM----PTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAYE 338

Query: 397 GQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPD 453
           G   +V  T++    + W F  +++ ++  E +   L ++   TI++L  G+ V     D
Sbjct: 339 GTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINND 396

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R    N    +     +N               +    + D           +  E K 
Sbjct: 397 FRYIYRNREAYN-RDLYKNDPVGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEGKD 455

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G + +L    +      L +   +    ++T+    +R L    E    +D +K++F+
Sbjct: 456 RNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEIIKRELQSSKEKAEMSDSLKSAFL 515

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+ L+  S       ++  Y   ++A++  LL L+N+ILDL+ +
Sbjct: 516 ANMSHEIRTPLNAIVGFSHLIAESDDA---EERKTYYNIVNANNERLLQLINEILDLSKI 572

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G ++ ++    L++L  EV  +   +  +  + +   S  +      D+ R+ Q+ S 
Sbjct: 573 ESGTIEFSFGPASLHNLCREVHDAHIFRTPQ-GVSLVYESSDESLMIETDKNRVFQVISN 631

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA+ F+ +GS +       +   +F V + G+ I  +    VF RF    +  Q  G
Sbjct: 632 LIGNAVKFTKEGS-ISYGYKLVDNQIVFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ--G 688

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSI +S +   GG +S++S     TT    +P
Sbjct: 689 TGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 119/365 (32%), Gaps = 50/365 (13%)

Query: 109 DTDLLSFENWLKFHH-YIKLSKATEKLRKEGQSFDLVAET-----QNDCAIKIEGRVSGS 162
           + D  SF  W + +   + +   + ++R  G+ F +  +T     ++D +  IEG     
Sbjct: 178 EEDRQSFMEWCRVNERELNMESISYRVRLNGEIFYMRIQTYLREQRSDGSFNIEGY---- 233

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
                I ++  I               N I+      ++    ++     G I++AN  +
Sbjct: 234 -----IQNITDIQ-----------HRRNDINTLTHAINNAKESIFAAKPDGTIIFANRRF 277

Query: 223 KKN---TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK--NFCETVSTLEHG----- 272
             N   +E E I   K    +  +  +E               NF     +  +      
Sbjct: 278 LYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAY 337

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI--FDQNR 326
               Y +            A D+S+ I    Q+    +     ++NL   I +   + + 
Sbjct: 338 EGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINNDF 397

Query: 327 YLQFHNRSF--VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              + NR     +L++ D        ++ +    + +  K  E +   T  + +    + 
Sbjct: 398 RYIYRNREAYNRDLYKNDP----VGKNDFDFYPPIVAEKKRQEDIQVATTGKGLHWTAEG 453

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            + + +   L + + + V          + +  ++T  +++  +     K + E  D L 
Sbjct: 454 KDRNGNMIIL-DKRKIRVDGDELSSPIIVSIEWDITE-LEIIKRELQSSKEKAEMSDSLK 511

Query: 445 EGVAV 449
                
Sbjct: 512 SAFLA 516


>gi|117926678|ref|YP_867295.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610434|gb|ABK45889.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 957

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 111/582 (19%), Positives = 230/582 (39%), Gaps = 36/582 (6%)

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG-- 287
           G+V Q       ++     +++        +   ET   L+      ++  RV  + G  
Sbjct: 244 GLVPQPQQQSVLEMLDRLSQQQQNQVQMEHRIHRETGGVLQV----LHRCERVEGANGPR 299

Query: 288 EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIF-----DQNRYLQFHNRSFVEL 338
             GI ID S+   +   L  + E    +  N+   +AI+       +  ++  N++    
Sbjct: 300 VQGILIDTSQSEALRGALAASEEKFRNLFDNMGSGVAIYEAIDNGDDFIIRGFNKASTVF 359

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            ++D   +       E+   +R+   L   L  + W   +         + D       Q
Sbjct: 360 TKLDRESILGK-RVTEIFPGIRAMGLL--DLFKRVWHSGVPEHL-PLTQYSDQRIT---Q 412

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIK 457
            +   V     G  + +F+++T     + +         E  + L +   +    G RI 
Sbjct: 413 WVENYVYRLENGEVVAVFDDVTSNRQAQQELAQSELRFREMAETLEDVFWITSAHGHRIL 472

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             NPAF  +W      L    ++ + +          +      +    FD E + ++G 
Sbjct: 473 YVNPAFEKVWGYSVQALEQDINLWSQSIHPEDRARVEEALLQSTSHADGFDQEYRIVRGD 532

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFV 573
              L    +     P+     ++       ++T     E AL +     ++A + K+ F+
Sbjct: 533 DGQL--RWIHNRGYPIEEQGQVVRVVGLATDITAKKENEAALQQAMRQAQQASQAKSEFL 590

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  +IG T+LL  +    L+ +Q +YV  + +S T LL+++N ILDL  +
Sbjct: 591 AAMSHEIRTPMNTVIGMTELLLET---PLSEEQQRYVRSLRSSGTALLDVINAILDLTRI 647

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           ++G ++L      L++L+ E  + +     +  + + +  +       V D  RL QI  
Sbjct: 648 ESGRLELTEERYDLHELMRETCEVMGYAAAKKKLEMVLEMNPNTPNYLVGDAPRLRQILI 707

Query: 693 KILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
            ++ NA+ F+  G   V +            V+++G  IP++   ++F+ F         
Sbjct: 708 NLVGNAIKFTEVGQVCVRVWLDEAVERLRIEVEDSGIGIPKEHINTIFDMFAQADSSMAR 767

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  G GLGL+I +    L GG +++ S  +  +     +P +
Sbjct: 768 RFGGSGLGLTISQRLAQLMGGRLAVQSQVQKGSCFTLSMPCQ 809


>gi|167851254|ref|ZP_02476762.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei B7210]
          Length = 757

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 110 GARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 165

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 166 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 224

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 225 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 280

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 281 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 340

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 341 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 400

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 401 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 457

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 458 RIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 518 TVSLERHDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 577

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 578 LHGGKVEAASAGKNRGTTFAITLPA 602



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 19/210 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRIL-SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +++      SCA   I+ +L G          +      +         SL   V 
Sbjct: 71  AGRLMQLATFAVVSCAICAIVVALKGSRRANDALRRREAGARRYYETL---LQSLTQGVV 127

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D+ G + + N S       +    +           +  +   + +SALE       S
Sbjct: 128 VSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRS 186

Query: 268 TLEHG------NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILH 313
               G      + +   I    +          G   I  D+S E   +        ++ 
Sbjct: 187 ASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVE 246

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               AI     NR +   N +   ++  D 
Sbjct: 247 ASPDAIVGVGSNRRITSWNPAARRMFGYDE 276



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 75  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGAR---RYYETLLQSLTQ 124

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 125 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 184

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 185 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 235

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 236 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 291

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 292 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 346


>gi|60680336|ref|YP_210480.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491770|emb|CAH06528.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 919

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 123/656 (18%), Positives = 253/656 (38%), Gaps = 53/656 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAG-----DILW 217
            + SL  I S   E      +     S  + LF  +      +   RD AG      I  
Sbjct: 273 WLSSLANIISICIELRKAKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIAD 332

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA--LEKNFCETVSTLEHGNNK 275
           AN     ++E  G+     +G        + K ++             ET          
Sbjct: 333 AN---DLSSELIGMSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRS 389

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
           S+ IV          + +D ++ I  +  L  + +    I  N+   + I+D++  L   
Sbjct: 390 SHCIVYSPEKDEVVALFLDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDL 449

Query: 332 NRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           N   +E +        + + F        E+ E +R+ + +  +LN+          Y S
Sbjct: 450 NNWDMETFGVKDKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLNYS--FNKASDYYHS 507

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +++    +    +        N   G + +  + T ++D   +            D+  
Sbjct: 508 DKSNIIELYTKVSKLFDSQGNFN---GYVLINIDNTERIDAINRIRDFENFFLLISDYAK 564

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG--WDLFAA 502
            G A         LS   +      +    +    + ++     + + E     +D +  
Sbjct: 565 VGYAKLN-----LLSKRGYAIKQWFKNMGETEDIPLSSVVGVYDKMHPEDRQKVFDFYEK 619

Query: 503 IITSFDDERKSLQGTLELLS---DSVLEYSII------PLPNAQTMLTFVNVTDSVRAER 553
           ++   + + +S    L+  +    + +  +++           + +    ++T+    E 
Sbjct: 620 VLAGEEKDFRSEMRILKPGATNEWNWVRMNVVVTKFEPEHGEVEIIGINYDITELKETEA 679

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y++ +
Sbjct: 680 MLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTEDM---EERCEYIKIV 736

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +  I +    
Sbjct: 737 QENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GIELVFDP 795

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                + ++DR RL Q+ S  ++NA+ F+S GS + +   +      F V + G  I ++
Sbjct: 796 HPSDCTVISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKE 854

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RFV         G GLGLSI +S +   GG + + S +         IP
Sbjct: 855 QLTHIFERFVKLNSFIH--GTGLGLSICKSIVEQLGGVIGVDSEEGKGARFWFTIP 908


>gi|189426162|ref|YP_001953339.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422421|gb|ACD96819.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 898

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 180/385 (46%), Gaps = 28/385 (7%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVA----VFGPDG-----RIKLSNPAFRSLWKTE 470
           T  V  E +     K      ++++ G A    ++   G     R    NPAF  L   +
Sbjct: 377 TSLVQRERELIESDKRYRLLFENMTSGFALNAMIYDEQGNPMDYRFITVNPAFEHLTGAK 436

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  G  +R +     +++ E+ G         ++++  + +             Y+ 
Sbjct: 437 AKDI-IGKTVREVMTGTEQHWIETYGRVARTGEPIAYENYAQDIGRYFST-------YAF 488

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            P P    +  F ++T+  ++++ L E  +A   A++ K+ F+ ++S+E+R+P+  ++G 
Sbjct: 489 CPEPGLFAV-VFNDITERFKSQQELAEAKDAAEAANQAKSDFLANMSHEIRTPMNGVVGL 547

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T LL+      L ++Q +Y++ I  S+  LL+L+NDILDL+ +++G ++L ++   L   
Sbjct: 548 TQLLR---FTELTTEQVEYLDSIETSADNLLSLINDILDLSKIESGKVELEFTDFSLRKA 604

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TV 708
           + ++  +  +++ E  ++IK      L   V  D+ R+ Q+F  +L NA+ F+ +G+ T+
Sbjct: 605 IQDIIITQKSRIFEKGLQIKQEIAADLPELVNGDQLRVKQVFINLLGNAIKFTERGTITI 664

Query: 709 ILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
            +       +      +V + G  + ++  + +F+ F        RR  G GLGLSI   
Sbjct: 665 AVSILERESNRALIRITVSDTGIGMSQETLQKIFDPFAQADSSTTRRFGGTGLGLSICRK 724

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
              L GG +++ S     ++ +  +
Sbjct: 725 LAELMGGAITVESIPGSGSSFHLDL 749



 Score = 38.0 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 22/143 (15%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIA----IFDQNR-----YLQFHNRSFVELWEIDLAF 345
           V +E  + +       +  N+T   A    I+D+            N +F  L       
Sbjct: 380 VQRERELIESDKRYRLLFENMTSGFALNAMIYDEQGNPMDYRFITVNPAFEHLTGA---- 435

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIV 404
                + D + + +R      EQ     W E    V ++ E      +  + G+      
Sbjct: 436 ----KAKDIIGKTVREVMTGTEQ----HWIETYGRVARTGEPIAYENYAQDIGRYFSTYA 487

Query: 405 TSNPRGGTIWMFENLTVQVDLET 427
                G    +F ++T +   + 
Sbjct: 488 FCPEPGLFAVVFNDITERFKSQQ 510


>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1349

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/638 (17%), Positives = 228/638 (35%), Gaps = 44/638 (6%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E     +  + L      ++ L ++++  +   D  G + +AN    + +       +K 
Sbjct: 302 ESIGVVIASQALKRSEERYRQLVETMNDGLAIIDVNGHLTYANPKLLEKSGYTFDEIKKI 361

Query: 237 IGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLEHGNNKSY----KIVRVLNSF- 286
                 +F          +  +    L   F   +   + G   +      +      + 
Sbjct: 362 --RISDIFDPNNKGVWKSQMALQKQGLGDQFELRLVRKDGGVIDALISPQPLFTPEGEYR 419

Query: 287 GEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G    A D++   T    L        E++H+    I   D    +   N    + +   
Sbjct: 420 GSLLAATDITARKTAERALQKSEEQYRELVHSANSIIMKTDSLGRITLFNEYAQKFFGYS 479

Query: 343 LAFLATNPSNDELL---EFL-RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
              +      + +L   + L R    + E+      +  I       +     W +   +
Sbjct: 480 EEEVLGKSLLETILPKEDSLGRDMVFMMEKFLEDPDRFRINDHENEKKNGDRVWVMWTNK 539

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            +            + +  ++T +  +E       +      D   E + +   +G   +
Sbjct: 540 AIRDE--QGELVEILSIGSDITSRRMMEQAIRESEERFRYLADATHEAILI-AEEGVCLV 596

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL--FAAIITSFDDERKSLQG 516
           +N A   ++      L        +  +C + +      DL   A +      E  +L+ 
Sbjct: 597 ANQAASDMFGYSLQEL--------VGDSCLKLFAGEGRTDLNILADMYAGPPKETLALRK 648

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                   V   ++       T+L   ++T   R+E AL       R A++ K  F+ ++
Sbjct: 649 DGSSFPVEVKSNAMQYRDKEVTVLAIQDITYKKRSEEALRYAA-VERAANKAKGEFLANM 707

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  IIG   LL+ +    LN++Q   ++ IS+S+  LL ++NDILD + ++AG
Sbjct: 708 SHEIRTPMNGIIGMASLLEDT---PLNNEQKDLLQTISSSAESLLRIINDILDYSKIEAG 764

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKIL 695
            + L          + +V   +A    +  ++I  +IS       V D  RL Q+   + 
Sbjct: 765 KLDLERIEFDPRSTVEDVTALMAKTAEQKGLQITSLISHKVPSKVVGDPGRLRQVLMNLT 824

Query: 696 SNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA+ F+SKG  ++     +         F + + G  +P+    S++  F        R
Sbjct: 825 GNAIKFTSKGEVIVRALVDEEDRGGATLRFEIIDTGIGVPQSRLSSLYESFTQADPSTTR 884

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           R  G GLGL+I +    L GG +   S +   +     
Sbjct: 885 RYGGTGLGLTISKQLCRLMGGKIGAESKEGEGSLFWFT 922


>gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
 gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
          Length = 1104

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 244/635 (38%), Gaps = 33/635 (5%)

Query: 183  LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
                K+   +  ++ +F+ ++   +  D  G+ L  N    +              +   
Sbjct: 472  KAYNKVQQSLKQYQDIFNGMNDAAFVHDLEGNFLDVNDVAVQRLGYSREELLAMGPKGID 531

Query: 243  LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI------VRVLNSFGEAGIAIDVS 296
                +IK +   +S L+  +    ++      K   +      V          IA D++
Sbjct: 532  DETSKIKIKNRINSILDDGYFAFEASHVTKTGKKIPVAINSSLVEYEGKPAILSIARDIT 591

Query: 297  KEITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +   +   L    ++   +T      ++  D+    ++ + S   +      +L      
Sbjct: 592  ERKKIEKALKENEKLYRRITNNMLDLVSQTDEKGVFEYVSPSHEYILGYKPHYLVGK--- 648

Query: 353  DELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RG 410
              + +F+   ++   + L +K       +  +    H D ++L      +V+   +    
Sbjct: 649  -NVFDFVHPEDRNKLKHLFYKCINNQKSATVEHRYQHADGYYLWLETVGNVVYDEDENDV 707

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
              I+   N+T +   E       K      +      A+   +    L N  F  L    
Sbjct: 708  KAIFGTRNVTERKKTEIALKESEKRYRTIFETTGSATAIADENSTFLLVNREFEKLSGYS 767

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            +  +    +  +        Y   + + L A   ++    +   +      +   +  ++
Sbjct: 768  KEEIEKRKNWTDFIVEEDLPYLRENYYKLLAN--STSVPRKYEFRFIDRNNNQKYISMAV 825

Query: 531  IPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRS 582
              +P  +  + T +++T+  ++E  L   +E L K +E       +K+ F+ ++S+ELR+
Sbjct: 826  NSIPERKIAIATLLDITERKQSEETLRIYSEKLSKTNEELRELDKMKDEFISNLSHELRT 885

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            P+T+I GF++L+   KLG+LN KQ + ++ I  S   L  L+  +L +  +    ++  +
Sbjct: 886  PITSIKGFSELIYNEKLGTLNEKQKEGMDSIVKSCDRLRWLIESLLYVNKLQTEKIQYKF 945

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              + +  L++ V  +++ ++ E  I I+   D  L     D+  L Q+   ++ NA  F+
Sbjct: 946  EPVDVETLIDGVVSNLSLQIKEKEISIEKYVDENLPYVNGDKDYLRQVLVHLMDNARKFT 1005

Query: 703  SKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
            S G  + + A  D     +      VK+NG  I ++    +F  F         +  G G
Sbjct: 1006 SSGGKIQIHAFNDADKSMDNFVHIIVKDNGIGIKKESIPDIFKLFYQIDGSMTRKYEGTG 1065

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            LG+ +    I  H G++ + S +   T ++ ++P+
Sbjct: 1066 LGMYLCNKIIETHNGYIWVDSEENAGTDVHVKLPA 1100



 Score = 45.7 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 96/321 (29%), Gaps = 51/321 (15%)

Query: 295 VSKEITVNDQLTH-----------TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
           + +  T+ +Q+                I   +   I I + +  +  +N++  +   +  
Sbjct: 16  IRELETLRNQVKQPKSPDSESFIPFDTIFDAIPDVIGIQNTDHEIICYNKAGYKFLNVSP 75

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHV 402
             +      + +              +    K    +VYK+ +  +   ++ + G  L V
Sbjct: 76  EEVKGKKCFEIIGRQS--------PCDICATK----NVYKTKQPSQVQKYIESMGVWLDV 123

Query: 403 IVTSNPRGG-----TIWMFENLTV---------------QVDLETKYNTLVK---VQGET 439
                          I    ++T                +  +E +   L +   +  + 
Sbjct: 124 RAYPVQDENGELTQIIEHLRDITTEKEMEKELEKSHIELEKRIEERTEQLKQEKDLMKKY 183

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D     +     +  I L N     +    ++++        I            G  L
Sbjct: 184 LDVSGTIILALDCNQNITLVNNKGCEILGYNKDKIVGSNIFDIIPERYKNDIKSVSGKLL 243

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              I T+   E   L GT E   + ++ +    L +    +T    +     ER L E+ 
Sbjct: 244 NEGIQTAQRFENPILTGTGE---ERIISWHNTVLKDQNGNITGTLSSGIDITERKLAEEK 300

Query: 560 E-ALRKADEIKNSFVQHVSYE 579
           +  L +      +  Q +++E
Sbjct: 301 QDYLNQVLRAIRNVNQLITHE 321


>gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 806

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 126/668 (18%), Positives = 251/668 (37%), Gaps = 71/668 (10%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
              L +    ++ LF++    ++  D  G I+  N ++ K     G   Q  IG +    
Sbjct: 5   ADNLCSSEERYRKLFENSPLGIFQADDKGIIVDCNDNFVKII---GSSRQALIGLNIHSL 61

Query: 245 KE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF---GEAGIAIDVS 296
            +     E KK +   +   ++   +VS  +    K +      ++    G  GI  DV+
Sbjct: 62  PDTKLVTEFKKSLSGEAGFYEDVYHSVSVDKATPVKVHFAPIFADNGRIQGCMGIVEDVT 121

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQN-----RYLQ------------FHNRSFVEL- 338
           ++    +++      L  +   +    Q+     + L              +NR    L 
Sbjct: 122 QKKLDEEEIHKNARRLSEINHCLLGLGQDFETNVQRLTALCGDLLGAACALYNRLESGLL 181

Query: 339 -----WEIDLAFLATNPSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
                W+    +   +     +    ++  ++   +   L+   +     +V + +    
Sbjct: 182 CSMGQWQAPEDYDPRDHPQGHICYDAIKQGQNETMVVTDLDQTEYARTDPNVRRYNLKTY 241

Query: 390 DTWHLPNGQ----TLHVIVTSN-----PRGGTIWMFEN-LTVQVDLETKYNTLVKVQGE- 438
               +  G+    TL V+   N          I +  + L+ + D       LV+ Q   
Sbjct: 242 LGHPVKCGEDFVGTLCVVYQENRVPTEDDKKVIGIIASALSAEEDRRQAREDLVRSQESF 301

Query: 439 --TIDHLSEGVAVFGPDGRIKLSNPAFRSLW--KTEENRLSPGTHIRNIAATCSRYYNES 494
               +     +  F   GR+   N      +     + +   G HI+ +        NE 
Sbjct: 302 KRLAEQCPISIMQFDSQGRLIFVNEWHMQHFAGNAVDKQKLLGMHIQELPGLEKAGINEQ 361

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVR 550
               L    +   +       G         +    +PL         +L   ++T   +
Sbjct: 362 VSQILNGEHLDVPEIFFPEFIGG----GCGWVSLRGVPLKEGDKITGGILIREDLTAWKK 417

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+ L +  +    A  +K  F+ ++S+E+R+PL  I G   LLK +   SL+ +Q +YV
Sbjct: 418 TEQELVKARQEAEAASRVKTEFLANMSHEIRTPLNGIAGMLQLLKET---SLDMEQKEYV 474

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +    SS  L  L++DILDL+ ++AG M ++       +L + V +  A      ++ ++
Sbjct: 475 DLGIKSSHRLTRLLSDILDLSRIEAGHMTIHQEEFDPLELCSSVNELFAVTTRNKHLSLE 534

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKN 725
            I  +G     V D  R+ QI   ++ NA+ F+ KG   V       +        +V++
Sbjct: 535 CIFQEGFPSRLVGDEARIQQILFNLVGNALKFTEKGGVQVSWSLYAGDDTEQQVRITVQD 594

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + +++ + +F  FV   +    + +G GLGLSIV+  + L  G++S+ S     +T
Sbjct: 595 TGIGMEQEVLQELFKPFVQAENSYTRKYQGAGLGLSIVKRLVELMHGNISVKSVPGQGST 654

Query: 784 INCRIPSK 791
               +P K
Sbjct: 655 FYVDLPLK 662


>gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 1137

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 243/630 (38%), Gaps = 68/630 (10%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGI---VFQKAIGESRKLFKEEIKKRMIS 254
           LF++L   +   +++G IL+     ++ +  EG       +   + ++ F   I++   +
Sbjct: 384 LFNNLPLRICVVNRSGRILFQ-HFPREMSCREGAGVHNISRLADKVQQSFSAWIQEAFRT 442

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVL-----NSFGEAGIAIDVSKEITVNDQLTHTY 309
              +EK++         G ++  + + +      +      I+ D ++    +  ++   
Sbjct: 443 GQRMEKDYE------LEGAHRHVEFIPLPKNNSFHEEAVMWISSDQTELHQAHRMVSRIA 496

Query: 310 E----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR--SAN 363
           E     L ++   +   D    +   N    ++    L   A     +E+   +      
Sbjct: 497 EQFRLTLESIGDGVIATDSEERITLLNPIAAQMTGYTLEE-ARGKKLNEVFNIISYLDGR 555

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMF 416
           K+   L        I  +   ++         +G   H+  ++ P         G + +F
Sbjct: 556 KVESPLTKALSTGKIIELANHTDLIA-----RDGTARHIADSAAPIRDVEGKIIGGVLVF 610

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-----GPDGRIKLS----NPAFRSLW 467
            ++T +     +  T        I   +  +A F        GR+         AFR   
Sbjct: 611 RDVTEEYKKRDRLRT-----HSVILANAAKIAKFFYFQCDNTGRLTALSAQNYRAFREEE 665

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           +            +      +R+     G D      +SF D   + +   EL +    E
Sbjct: 666 RVPLAEWLAPDDRQRFDGNWNRFLESGIGGDT-----SSFSDVFAAGKSRFELRA----E 716

Query: 528 YSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            S+  +     +     ++T+    +  L +  E  R AD  K+ F+  VS+ELR+PL  
Sbjct: 717 KSVNEINGKWEICGVIQDITELAEQQEKLQQALEQARAADRAKSYFLATVSHELRTPLNA 776

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +IGF++LL+ + +     +Q +Y+  I+ +   LLNL+ND+LDL+ ++A  ++L+   + 
Sbjct: 777 VIGFSELLQGADVEP--QEQQEYLGSINFAGNALLNLINDVLDLSRLEADQVELDCRPVD 834

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  L+ E+      K  E N+ +++       +   D  R+ QI   +  NA+ F+  G 
Sbjct: 835 VKRLVREIVGVFKQKAVEKNLSLQMTYTNLPPTLYLDDLRIKQILLNLTGNALKFTHDGG 894

Query: 707 TVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGL 758
             +    R       G  IFS+ + G  I  +    +F  FV ++         G GLGL
Sbjct: 895 VTVSAVFRLAEEAGQGTLIFSITDTGIGILPEKISQIFEPFVQDSGVRGHRIYEGSGLGL 954

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I +  +   GG +S  S+    +T   R+
Sbjct: 955 AISKRLVEKMGGKLSAESTPGKGSTFTVRL 984



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 91/281 (32%), Gaps = 27/281 (9%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                   + +NL + I + +++  + F  + F    E+     A   +   L + +   
Sbjct: 376 RMKKRIAVLFNNLPLRICVVNRSGRILF--QHFPR--EMSCREGAGVHNISRLADKV--- 428

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP------RGGTIWMF 416
                Q ++  W +  F   +  E   +      G   HV     P          +W+ 
Sbjct: 429 -----QQSFSAWIQEAFRTGQRMEKDYEL----EGAHRHVEFIPLPKNNSFHEEAVMWIS 479

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRL 474
            + T         + + +    T++ + +GV     + RI L NP    +      E R 
Sbjct: 480 SDQTELHQAHRMVSRIAEQFRLTLESIGDGVIATDSEERITLLNPIAAQMTGYTLEEARG 539

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAA---IITSFDDERKSLQGTLELLSDSVLEYSII 531
                + NI +       ES      +    I  +   +  +  GT   ++DS      +
Sbjct: 540 KKLNEVFNIISYLDGRKVESPLTKALSTGKIIELANHTDLIARDGTARHIADSAAPIRDV 599

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                  +L F +VT+  +    L   +  L  A +I   F
Sbjct: 600 EGKIIGGVLVFRDVTEEYKKRDRLRTHSVILANAAKIAKFF 640


>gi|284165631|ref|YP_003403910.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015286|gb|ADB61237.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 767

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 121/713 (16%), Positives = 264/713 (37%), Gaps = 62/713 (8%)

Query: 120 KFHHYIKLSKATEKLRKEG----QSFDLVAETQNDCAIKIEGRVS-------GSCAFLRI 168
                 ++ +   +LR  G    ++ +    T +   I+ E RV        GS   L+ 
Sbjct: 71  DETDRQRVKRELSELRTTGGRRNETIETAVHTADGETIRCELRVHPLSDEVHGSVGVLQE 130

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD-ILWANISYK---- 223
            S                +  N +  F+ L + LD +VW         ++ N +++    
Sbjct: 131 RSEPTSDGNRTGRVEAEGRRRNEV-TFRQLVEHLDQVVWMSTADMRETIYVNSAFEEVYG 189

Query: 224 ----KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-- 277
               +  E   ++      + R+L + E++  +     +E    +       G+ +    
Sbjct: 190 RDRERLYEDPEVLLDAVHPDDRELLRSELETEVEEPHVIEYRIVQP-----DGDVRWIHD 244

Query: 278 KIVRVLNSFG----EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI----FDQNRYLQ 329
           ++V V +  G      G A+D+++      +L  T   L   T A A+    +       
Sbjct: 245 RVVPVYDDDGNVFRIVGEAMDITERKEHERELEDTKSQLEAATEAGAVGTWEWHVRTDEM 304

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
               SF   + ++        S D  +E +          +       I  V ++   ++
Sbjct: 305 IVGPSFARTFGVNPEAARDGVSLDRFVEAVHED-------DRDRVAAEIEEVVETCGEYE 357

Query: 390 DTWHL--PNGQTLHVIVTSN---PRGGTIWMF----ENLTVQVDLETKYNTLVKVQGETI 440
             + +   +G+   V+   +      G    F     ++T +   E +     +      
Sbjct: 358 SEYRVRDADGELRWVVARGHIECAENGEAMTFPGALTDITERKRAELRLEQTTEQLATLF 417

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           + L  GV V   DG    +N   + +W  +   +             +      +  +  
Sbjct: 418 EILPVGVVVADSDGGFVEANETAKEIWGGDVFDVESVAEYERYTGWWAESDEPVEPEEWT 477

Query: 501 AAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
            + +   ++        +E +     +++   +P+ +A   +T   VT S   ER     
Sbjct: 478 MSRVLEGEEVTDPDIYEIETVDGARRIIQAEGMPVWDADGDVTRGVVTISDITER--RAY 535

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
              L +++E    F    S++L+ PL  +  +  LL++    + +    +++E+    + 
Sbjct: 536 QRKLEESNERLEQFAYAASHDLQEPLRMVTSYLQLLESRYADAFDEDGREFLEFAVDGAD 595

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  +++ +L+ + V+       +    LND+L +V+  +  ++ E+   I       L 
Sbjct: 596 RMRAMIDGLLEYSRVETRGDP--FEPTDLNDVLEDVRSDLQLQIEESGAEITT---EDLP 650

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               D  +L Q+F  +LSNA+ +S +GS  V + A R    ++ SV++NG  I  +  + 
Sbjct: 651 RVNGDVDQLRQLFQNLLSNAIIYSGEGSPRVRVDARRRGRQWVISVEDNGIGIDPEDQER 710

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F  F     R +  G G+GL++ E  +  HGG + + S      T +  +P+
Sbjct: 711 IFTVFDRLHSREEYEGTGIGLALCERIVERHGGEIWVDSEAGDGATFSMTLPA 763


>gi|330828889|ref|YP_004391841.1| Virulence sensor protein BvgS [Aeromonas veronii B565]
 gi|328804025|gb|AEB49224.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565]
          Length = 1414

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 109/515 (21%), Positives = 209/515 (40%), Gaps = 43/515 (8%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA--TNPSNDE 354
             E T+N+QL     +L +L   +A+ D++  L   NR++ EL+  D          + DE
Sbjct: 549  AEKTLNEQLVFIQTLLDSLPNMVALRDRDHRLTLSNRAYRELFVGDGEEGDHWGYMTEDE 608

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG 410
              + LR    + E  +       IF     ++   D         LHV+    P     G
Sbjct: 609  RQQMLREERAVWETGD-------IFEGSGYTQREGDV-------PLHVVYVKLPYRAADG 654

Query: 411  ---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPDGRIKLSNPAF 463
               G + +  +++     E K   +     +  D +   V  +       G+    +   
Sbjct: 655  AIQGVLTVLTDVSALKAAENKVREVEGRLRDITDSMPGLVYQYLWQGAGKGQFLYLSQGA 714

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSR-YYNESDGWDLFAAIITSFDDER--KSLQGT--L 518
              +       L        I            D     A  +   D E    S+QG   +
Sbjct: 715  SDILGMTHQELMAAESGGVILGLNDEALATFIDKVAKHAQTLEPLDMEVLVPSVQGERYI 774

Query: 519  ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            ++  + V +     L N        ++T   + E  L E   A  +A + ++ F+  +S+
Sbjct: 775  QIRGNFVAQQGHDRLLNG----VVQDITAIKQQEHELREARAAAEQAMQARSLFLATMSH 830

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            ELR+P++ + G  +LL+ S+   LN  Q   +  + +S+  LL LVNDILD + ++AG +
Sbjct: 831  ELRTPISGMHGMLELLRMSE---LNDDQRYLLRNVESSANHLLYLVNDILDFSKIEAGQL 887

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSN 697
             LN  +  L  ++ +V +  A   +   +++ +  + +L      D  R+ Q+ S +L+N
Sbjct: 888  HLNRQSCRLQPVVCDVIRGHAALAYSKGLKVTLQWEDQLPDLADIDPVRVGQVVSNLLNN 947

Query: 698  AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVG 755
            A+ F+ +G+ + ++ +  +   + +V + G  I E+    +F  F    +    +  G G
Sbjct: 948  AVKFTEQGA-ISIQVSCHDQQLVIAVTDTGIGIAEEKQAKLFTPFEQVESDINRRFGGTG 1006

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            LGL+I +  +   GG +++ S           IP 
Sbjct: 1007 LGLAICDQLVKKMGGTLTVKSQLGEGACFRFSIPL 1041



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 19/179 (10%)

Query: 152 AIKIEGRVSGSCAFLRILSLD-GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
                G  + +  F    + +  +  E+ +     K L+  +   + L DSL  +V  RD
Sbjct: 516 FWFAMGGAAATLLFALFWAWNRTLKREIVQRQRAEKTLNEQLVFIQTLLDSLPNMVALRD 575

Query: 211 QAGDILWANISYKKNTETEGIVFQK----AIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           +   +  +N +Y++    +G            E +++ +EE              + +  
Sbjct: 576 RDHRLTLSNRAYRELFVGDGEEGDHWGYMTEDERQQMLREERAVWETGDIFEGSGYTQRE 635

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAI--------DVSKEITVNDQLTHTYEILHNLTV 317
             +         +V V   +  A  AI        DVS      +++      L ++T 
Sbjct: 636 GDVP------LHVVYVKLPYRAADGAIQGVLTVLTDVSALKAAENKVREVEGRLRDITD 688



 Score = 42.2 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  +   E   N  +      +D L   VA+   D R+ LSN A+R L+  +      
Sbjct: 541 REIVQRQRAEKTLNEQLVFIQTLLDSLPNMVALRDRDHRLTLSNRAYRELFVGDGEEGDH 600

Query: 477 GTHIRN 482
             ++  
Sbjct: 601 WGYMTE 606


>gi|67639970|ref|ZP_00438795.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei GB8 horse 4]
 gi|238520599|gb|EEP84057.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei GB8 horse 4]
          Length = 757

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 200/505 (39%), Gaps = 29/505 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               +   +L +LT  + + D++  L + N S   L   D   +   P      +  R+ 
Sbjct: 110 GARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGCDATAVRGLP----FRDVYRAY 165

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
           +         +  E++    +S+          +GQ + +   ++P         G + +
Sbjct: 166 DGRG-ARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLI 224

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++    +E + +   ++    ++   + +   G + RI   NPA R ++  +E+   
Sbjct: 225 VRDIS----IERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAAR 280

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEY 528
                  IA    R +   +        I + D         R     +   + D     
Sbjct: 281 GCDVAMLIAPRWLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDAC 340

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + L    T           R+ R   +       ++ +K+  +  VS+ELR+PL  I 
Sbjct: 341 IALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIY 400

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L 
Sbjct: 401 GWIEVLRNPVDGAL---QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 457

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N+V  ++      + I + V           D +RL Q+ S +LSNA  F+ +G  V
Sbjct: 458 RIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRV 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            +   R +     +V + G  I  +    VF  F     A    RRG+GLGLSIV     
Sbjct: 518 TVSLERHDAQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAE 577

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LHGG V  +S+     TT    +P+
Sbjct: 578 LHGGKVEAASAGKNRGTTFAITLPA 602



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 18/190 (9%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +++L G          +          ++ L  SL   V   D+ G + + N S      
Sbjct: 91  VVALKGSRRANDALRRREAGAR---HYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIG 147

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG------NNKSYKIVR 281
            +    +           +  +   + +SALE       S    G      + +   I  
Sbjct: 148 CDATAVRGLPFRDVYRAYDG-RGARVRASALEHVLRSGRSASVEGHWLAPHDGQRVPIAE 206

Query: 282 VLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
             +          G   I  D+S E   +        ++     AI     NR +   N 
Sbjct: 207 AASPLVDSAGDMTGAVLIVRDISIERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNP 266

Query: 334 SFVELWEIDL 343
           +   ++  D 
Sbjct: 267 AARRMFGYDE 276



 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            ++A F  ++  +   ++ +           +  +      +        Y +LL     
Sbjct: 75  MQLATFAVVSCAICAIVVAL-------KGSRRANDALRRREAGARH---YYETLLQSLTQ 124

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH-------YIKLSKATEKL 134
             +V D       +       I    T    L F +  + +           L       
Sbjct: 125 GVVVSDRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSG 184

Query: 135 RKEG---------QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           R                +         +   G ++G+   +R +S++   S         
Sbjct: 185 RSASVEGHWLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIERERS--------- 235

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGESR 241
                   + + L ++    +        I   N + ++    +    +      +   R
Sbjct: 236 ----AASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPR 291

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            L    + + +       +N        + G  ++      +    +A IA+ ++
Sbjct: 292 WLRNHPLPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLT 346


>gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
 gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 1452

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 147/829 (17%), Positives = 303/829 (36%), Gaps = 112/829 (13%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQ---LSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQ 101
            IR   SL +      S           L +    L  N    +   G     +++G+   
Sbjct: 507  IRNEESLRESEKRFRSLFENAPLAYQSLDENGRFLDVNRKWLVA-LGYAAKDDVVGKWFG 565

Query: 102  RIDIPQTDTDL-LSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA-IKIEGRV 159
                P       L+F   +     +      E +RK+G   DL++ T N    +  EG  
Sbjct: 566  DFLAPGFKEHFDLNFP--MFKQACVIDGVEFEMVRKDG---DLISVTFNGRVQLNSEGHF 620

Query: 160  SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
              +             +++ E       L      ++ + D+    +   D+ G I++ N
Sbjct: 621  MRTHCIF---------TDITERKRAEDALRESEQRYRRIVDTAQEGIRISDECGRIVYLN 671

Query: 220  ISYKKNTETEGIVFQKAIGESRK--LFKEEIKKRMISSSALEK---NFCETVSTLEHGNN 274
                + ++  G    + +G + +  LF E+++  +       +   +  E       G  
Sbjct: 672  Q---RMSDLLGYSQDQMLGRNIEDFLFPEDLEDHLRRMEDRRRGCDDCYEKRLRRSDGTA 728

Query: 275  KSYKIVRVLNSF------GEAGIAIDVS----KEITVNDQLTHTYEILHNL------TVA 318
                +             G   +  D++     E  +  +     ++L  +      T +
Sbjct: 729  VWTLVSVKSLPDATGRYDGSLAMFSDITDRKLAEEALRQEDARLRKLLEIIQYDTANTQS 788

Query: 319  IAIFDQNRYLQFHNRSFVELWEIDLA---FLATNPSNDELLE---------FLRSANKLP 366
            +  F  ++ L+     F  ++  D     F   + S D +           +  S   L 
Sbjct: 789  LLDFALSKCLELTGSRFGYIYHYDEDSQSFTLNSWSRDVMQACSIANPQSCYALSKTGLW 848

Query: 367  EQLNWKTWKENIFSVYKSSETHKDTWH--------------LPNGQTLHVIVTSN----- 407
             +   +  +  I + + +    K  +               L N + + V+  +N     
Sbjct: 849  GEAVRQC-RAIIVNDFLTDNPLKKGYPEGHAQLTNFLTVPILSNKRIVAVVGVANKQTDY 907

Query: 408  --PRGGTIWMFENLT----VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
                   + +  + T     +   E       +     +   ++G+  +         +P
Sbjct: 908  MDSDVIQLSLLMDATWRVVERRQAEESLRKSDERLSLALMAANDGMWDWDISSGTTYFSP 967

Query: 462  AFRSLWKTE----------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             + ++                 L     + +   T S   N S+G+++       F    
Sbjct: 968  RYYTMLGYHPGEFPSDFDTWKGLLHPDDVEHAIHTISESLNNSEGFEI------DFRMRT 1021

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            KS   +  L    V+E +       + + T V++ +  R++  L         A++ K+ 
Sbjct: 1022 KSGDWSWILGRGRVVE-TDAEGHAKRMVGTHVDINERKRSQADLLSAKVQAEAANKAKSE 1080

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+PL  I+G   LL+T++    N +Q +Y+   + S+  L  L++DILD++
Sbjct: 1081 FLANMSHEIRTPLNGILGMLQLLQTTE---PNDEQKEYLAGATRSTKRLTRLLSDILDIS 1137

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQI 690
             ++AG M +  +   +  L + +++   T      + +  I D +L +  + D  RL QI
Sbjct: 1138 RIEAGRMDVVETEFDIYQLQDSIREIFDTDAQGKGLVLDFIWDDELPTALIGDEARLRQI 1197

Query: 691  FSKILSNAMDFSSKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
               ++ NA+ F+ KG  V+++A+        +   + +V + G  I E+  K +F  FV 
Sbjct: 1198 LFNLVGNAIKFTDKGE-VLVEASLLPSPNTSSVRVLLTVSDTGIGICEEHLKYIFEPFVQ 1256

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  +R  G GLGLSIV    +L GG +SI S+    TT+   +P K
Sbjct: 1257 AEISYTKRFQGAGLGLSIVRRLASLLGGDISIDSALGEGTTVYLSLPFK 1305



 Score = 94.6 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 131/414 (31%), Gaps = 36/414 (8%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           ++            ++  + L  ++   ++++D  G  L  N +++      G   Q  +
Sbjct: 378 VSRRKRAEALYQGQLNFVETLMRAMPAPLFYKDIQGRYLGVNPAFETLM---GKPEQDFV 434

Query: 238 GE-SRKLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRV-----LNSF 286
           G    + F +E  +  +          +    + V     G         V      +  
Sbjct: 435 GRLPTETFPQEHGQVFVQRDQELSNLGDMQRYQHVMPTALGLRTLMVTKAVFPGKDGSPA 494

Query: 287 GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS-FVELWEI 341
           G  GI  D++     E ++ +       +  N  +A    D+N      NR   V L   
Sbjct: 495 GVVGILDDITDRIRNEESLRESEKRFRSLFENAPLAYQSLDENGRFLDVNRKWLVALGYA 554

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
               +          +FL    K    LN+  +K+         +  +      +G  + 
Sbjct: 555 AKDDVVGKW----FGDFLAPGFKEHFDLNFPMFKQACV-----IDGVEFEMVRKDGDLIS 605

Query: 402 VIVTS----NPRGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           V        N  G  +    +F ++T +   E       +     +D   EG+ +    G
Sbjct: 606 VTFNGRVQLNSEGHFMRTHCIFTDITERKRAEDALRESEQRYRRIVDTAQEGIRISDECG 665

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           RI   N     L    ++++  G +I +         +     D        ++   +  
Sbjct: 666 RIVYLNQRMSDLLGYSQDQML-GRNIEDFLFPEDLEDHLRRMEDRRRGCDDCYEKRLRRS 724

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            GT      SV            ++  F ++TD   AE AL +++  LRK  EI
Sbjct: 725 DGTAVWTLVSVKSLPDATGRYDGSLAMFSDITDRKLAEEALRQEDARLRKLLEI 778


>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
 gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
          Length = 1259

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 99/412 (24%), Positives = 180/412 (43%), Gaps = 33/412 (8%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYN-TLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V V  +   G I   +  +  +V+ E K      +   E  ++  EG+    P+G    +
Sbjct: 424 VHVEPHTEVGQIAAEYNRVLAKVNCEMKQRSEAERRFREIFENAVEGIYQTTPEGFFVTA 483

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA------AIITSFDDERKS 513
           NPA   +    +          +I    +  Y   D  D F        ++ +F+ E + 
Sbjct: 484 NPALARMLGYPDLASLR----DDIKNVATDVYVNRDRRDEFVDEIHQNGVVFNFESEIRR 539

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK--NS 571
             GT   +S++    S     N   +     V D     +AL   +E        +  ++
Sbjct: 540 GDGTFAWISENA---SARRNQNGDVLYYEGTVEDITEHRKALQLTDEIKAAEAANEAKST 596

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+PL  +IGF DLL T+K   L+ +Q ++VE   +S++ LL+L+NDILDL+
Sbjct: 597 FLASMSHEIRTPLNGVIGFLDLLHTTK---LDDQQGRFVELAKSSASSLLHLINDILDLS 653

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
            ++AG ++L  +  VL DL+  V +  A +     + +       +  + + D +R+ Q+
Sbjct: 654 KIEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLELNSSVATDVPQAAIGDCERIRQV 713

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNG---------DFIFSVKNNGSSIPEDMCKSVFNR 741
              + +NA+ F+  G  V L+  R+              FSV++ G  +P    + +F  
Sbjct: 714 LVNLFANAVKFTETGG-VYLRVERERSVASSHDAIARIRFSVEDTGIGVPRSKMQRLFKA 772

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F        R   G GLGL+I +  + L GG + + S     +T    +P +
Sbjct: 773 FSQVDASTTRSYGGTGLGLAICKQLVELMGGEIGVESEVGKGSTFWFTLPLQ 824


>gi|325107448|ref|YP_004268516.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
 gi|324967716|gb|ADY58494.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
          Length = 1168

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 152/818 (18%), Positives = 294/818 (35%), Gaps = 88/818 (10%)

Query: 33  MLLTTIIPIILLIRQR--NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD 90
           +L  +     +++  R       + ++  +   EI        S +         W  + 
Sbjct: 204 LLGLSCFLAPVILGYRLQRQFQAQADQLTARGDEILATKRHLLSAIGATAGGLWSWTLET 263

Query: 91  ET----PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK------------- 133
           +      E    L  R +       + SF + +       L  A E              
Sbjct: 264 DELWTNHEFWILLGYRQNGEFPHNQIASFRDHVHPKDRQLLDNAIETHLRMRLPLDVEIR 323

Query: 134 ---LRKEGQSFDLVAETQ---NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
              L+ E +   L A+T+   ND  +++ G V    A            +LAE  L  + 
Sbjct: 324 FWHLQDECRWMRLRAQTERNANDVPVRLAGVVEDIHA-----------HKLAELKLNGR- 371

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKE 246
               +    ++       V   + +G + W N  + + T  T   +  +  G   +    
Sbjct: 372 -EQEVQRLALVARQTTNGVVITNSSGQVEWVNEGFSRLTGYTLDDLLGRKPGSVLQGPHS 430

Query: 247 EIKK--RMISSSALEKNF-CETVSTLEHGNNKSYKIV------RVLNSFGEAGIAIDVSK 297
           ++     M  + A  ++F  E V+  + G     +I             G   I  D+S+
Sbjct: 431 DVGTISDMRRAIAAGQSFKAELVNYHKSGREYWVRIEGDPIHDEQGQLTGFIAIQSDISE 490

Query: 298 EITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN- 352
            +    +L  + E    +L +L VA    D N  + F+N++ V+LW    A    NP++ 
Sbjct: 491 RVQFAQELAASREQFKNMLEHLPVAAYTCDANGLITFYNKAAVKLWGRTPAL--NNPADR 548

Query: 353 --DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
                  F R+   LP +   K       S    +++ +     P+G     +  +    
Sbjct: 549 YCGSFRLFERNGTPLPAE---KHLMARALSQPGQNQSSEIIVEAPDGSRKTGMAYAKALV 605

Query: 411 -------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE--GVAVFGPDGRIKLSNP 461
                  G + +  ++T ++ LE             +  L E   VA     G I+  N 
Sbjct: 606 NAEQEVTGGVNVIVDMTERIALEQSLREATARLELCLKILDEHAIVAETDLKGIIRDVND 665

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS--FDDERKSLQGTLE 519
            F  +       L   +H        S ++  +   ++F  I  +  +  E  + +   E
Sbjct: 666 MFCDVSGYSREELIGNSH----RILNSGFHPRTMWTEVFRQIARTGMWQGEICNRRKNGE 721

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           L     ++ +I  + +A           +      L    EA   A   K+ F+ ++S+E
Sbjct: 722 LY---WVDTTIAAIHDAAGRPNGYFAIRNDIT--ELKAAKEAALAASHSKSEFLANMSHE 776

Query: 580 LRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +R+PLT IIG+ ++L+   ++     K+S  +  I  +   LL +++DILDL+ ++AG M
Sbjct: 777 IRTPLTAIIGYAEILRDDPEIAESPEKRSHALNTIHEAGRHLLTIISDILDLSKIEAGKM 836

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
            +  +   + ++L++V+  +  +     + +       +     +D  RL QI   ++ N
Sbjct: 837 SIEQTDTSVANVLSQVESFLRPRAVGKGLSLTTRLAQAIPDRIQSDPTRLRQILMNLVGN 896

Query: 698 AMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRR 752
           A+ F+  G    TV      D     F +++ G+ + +   + +F  F         Q  
Sbjct: 897 AIKFTEAGHIQLTVSRIQREDKEFLQFDIEDTGTGMTDTQREQIFQAFSQADTSVTRQYG 956

Query: 753 GVGLGLSIVESFINLHGGHVS-ISSSDEGVTTINCRIP 789
           G GLGL I      L  G V  + S     T     +P
Sbjct: 957 GTGLGLVICRRLARLMNGDVWLLWSEAGRGTCFRAALP 994


>gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
          Length = 815

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 162/371 (43%), Gaps = 26/371 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH----IRN 482
           ++ N   +   + ++++ +G+ +     R+ + N     +++    +           RN
Sbjct: 337 SQVNLEREKMKKILENVGDGLVILDGRKRLSMFNNVASEIFQLSFGQAGKRCTEVLKCRN 396

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           ++       +E     +    ++    E K   G  E++             N       
Sbjct: 397 LSGEI--MCSECPLDKMVFQGLSLMQYEMKVWNGEKEIILG----------CNLSGTWEG 444

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             VT+ + A R ++   E     D +K+ FV +VS+EL++PLT I G+++LL    L   
Sbjct: 445 RKVTNFILALRDISLAKEL----DRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPP- 499

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +   Y + I   S  L  LVND+L+++ +++G ++L    + +  ++ E      T+ 
Sbjct: 500 -ERVRNYYQIIYKESERLTQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTRT 558

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++ I ++          + D  RL Q+F  +L NA+ +S  G  V ++ A    D +  
Sbjct: 559 SKHTIVLQF--PEYPTFVLGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVADKMEDILIE 616

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IP +    +F+RF            G GLGLSIV+S +  HGG +S +S    
Sbjct: 617 VQDQGVGIPPEHLPHIFDRFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKVGE 676

Query: 781 VTTINCRIPSK 791
            TT   R+P +
Sbjct: 677 GTTFTIRLPRR 687


>gi|312892347|ref|ZP_07751842.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311295131|gb|EFQ72305.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1043

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 141/785 (17%), Positives = 302/785 (38%), Gaps = 67/785 (8%)

Query: 34  LLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP 93
           L   +I  + L +Q+N L +++   ++    + +   + H ++ ++  + ++    D   
Sbjct: 152 LARGVISHLTLRKQKNELEERLK-LHTEFFNLFNNSPEIHCIMDKSANIELI---NDSVT 207

Query: 94  EIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK-LRKEGQSFDLVAETQNDCA 152
            ++G   Q             FE         +LSK  E+ LR + ++F+L         
Sbjct: 208 RVLGYTPQES---IGKPIWFFFE----EDDRTRLSKVVEEGLRNKKKTFELETRIVARN- 259

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLK--CKKLSNHISVFKVLFDSLDFLVWHRD 210
                   G   ++    +    S  A        KK+   + +  ++   +   V   +
Sbjct: 260 --------GDIKWISWSVIAKGQSWYASGRDNTYQKKILADLELLSLVASKVSNGVVISN 311

Query: 211 QAGDILWANISYKKNTE-TEGIVFQKAIGESR--KLFKEEIKKRMISSSALEKNFCETVS 267
             G I+W N ++   T  T   V  +A+  S   +         M + +   ++F + + 
Sbjct: 312 ADGGIIWTNNAFTDITGFTYDDVKGRALSGSLTGESTDVATINEMRNLTENRRSFEKDLQ 371

Query: 268 T-LEHGNNKS--YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIA 320
              + G+     +    + +  G     ++V  +IT         EIL          I 
Sbjct: 372 IYRKDGSTLWVSFNNSIIFDDCGNVDKYVEVLVDITKRKNAELDREILSFAAQKSPSGIL 431

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           I D    + + N +   +    L+ +        LL        + E  +   +++ + +
Sbjct: 432 IRDGRGEVIWMNEALEHILGYALSEMRGK-VFGTLL--------VGEDTDLAVFQDAVKA 482

Query: 381 VYKSSETHKDT-WHLPNGQTLHVIVTSNP----RGGTI---WMFENLTVQVDLETKYNTL 432
             +      +   +  +   + V++++NP     G  +    +  ++T + + E +  TL
Sbjct: 483 TSERRPYEIEIKIYKKDRTPIWVLLSNNPMIDEEGNVVRQTSVVIDITKRKEAEEELTTL 542

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
             V   T    + GV +   DG ++  N AF  +       +    HI ++         
Sbjct: 543 SLVASST----TSGVVINDKDGCVEWVNDAFEKITGYNLTSV-YQRHIGDVLKGELTDVA 597

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--QTMLTFVNVTDSVR 550
             +     +    SF+ +    +   + +  SV+   I        + +   +++T    
Sbjct: 598 LIEKARELSRNKQSFELDLLIYRSDGQPIWVSVINSVIFDSNGGVSKYVEVLIDITAKKN 657

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+ L +  E   + +  K+ F+  +S+E+R+PL  +IG ++LL      + +  Q + +
Sbjct: 658 AEQQLIDAKEEALQLNTAKDMFISVMSHEIRTPLNAVIGISNLLIE---DNPSHSQQENL 714

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  S+  L+ L+ND+LD   V+ G ++L  + + + +L++ V  S+  K    +I I+
Sbjct: 715 KILKFSADNLMTLINDVLDFTKVETGNVELEKTNLNIRELVDSVVNSLQYKAEAKHIYIR 774

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
              D +L    + D+ R+ QI   ++ N++ F+ KG   I    ++         F V +
Sbjct: 775 TDIDEQLPLDILGDKTRICQILLNLVGNSVKFTEKGGVTIDLKLIEQTAGQVRIRFEVSD 834

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP D   +VF  F            G GLGL+I +  I LH   +++ S     + 
Sbjct: 835 TGIGIPPDKLNTVFESFKQAQTDTTRLYGGTGLGLAITKRLIELHDSRINVESVYGHSSK 894

Query: 784 INCRI 788
               I
Sbjct: 895 FWFTI 899


>gi|253563810|ref|ZP_04841267.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947586|gb|EES87868.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 929

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 122/656 (18%), Positives = 254/656 (38%), Gaps = 53/656 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAG-----DILW 217
            + SL  I S   E      +     S  + LF  +      +   RD AG      I  
Sbjct: 283 WLSSLANIISICIELRKTKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIAD 342

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA--LEKNFCETVSTLEHGNNK 275
           AN     ++E  G+     +G        + K ++             ET          
Sbjct: 343 AN---DLSSELIGMSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRS 399

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
           S+ IV          + +D ++ I  +  L  + +    I  N+   + I+D++  L   
Sbjct: 400 SHCIVYSPEKDEVVALFLDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDL 459

Query: 332 NRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           N   +E +        + + F        E+ E +R+ + +  +LN+          Y S
Sbjct: 460 NNWDMETFGVKDKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLNYS--FNKASDYYHS 517

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +++    +    +        N   G + +  + T ++D   +            D+  
Sbjct: 518 DKSNIIELYTKVSKLFDSQGNFN---GYVLINIDNTERIDAINRIRDFENFFLLISDYAK 574

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG--WDLFAA 502
            G A         LS   +      +    +    + ++     + + E     +D +  
Sbjct: 575 VGYAKLN-----LLSKRGYAIKQWFKNMGETEDIPLSSVVGVYDKMHPEDRQKVFDFYEK 629

Query: 503 IITSFDDERKSLQGTLELLS---DSVLEYSII------PLPNAQTMLTFVNVTDSVRAER 553
           ++   + + +S    L+  +    + +  +++           + +    ++T+    E 
Sbjct: 630 VLAGEEKDFRSEMRILKPGATNEWNWVRMNVVVTKFESEHGEVEIIGINYDITELKETEA 689

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y++ +
Sbjct: 690 MLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTEDM---EERCEYIKIV 746

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +  + +    
Sbjct: 747 QENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDP 805

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                + ++DR RL Q+ S  ++NA+ F+S GS + +   +      F V + G  I ++
Sbjct: 806 HPSDCTVISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKE 864

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RFV         G GLGLSI +S +   GG + + S +   +     IP
Sbjct: 865 QLTHIFERFVKLNSFIH--GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918


>gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 661

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 162/386 (41%), Gaps = 28/386 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D E +           +  +  GV      GR+   NP    L   +         +   
Sbjct: 23  DAEERLRDSEGRLSAILQSIGAGVIATDQQGRVAFLNPVAERLTGWDLVDA-----LNRP 77

Query: 484 AATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEY----SIIPLPNA-- 536
                   +E+ G  L A +    +D E     G L L S     Y    ++ P+ +   
Sbjct: 78  VMEVLNLVDEASGRPLTAPLQRVQEDGEIIDCSGELVLRSRQGKNYPVSCTVAPIASFSG 137

Query: 537 --QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +  F +       +R L    E   +A + K+ F+  +S+E+R+PLT I+G  DLL
Sbjct: 138 IIGCVFVFRDTIREREIQRNLLSAKEEAERASQAKSEFLASMSHEIRTPLTTILGMADLL 197

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             + LG   ++Q QYV    A+   LL+L+N ILDL+ ++AG +++      L+ LL + 
Sbjct: 198 DKTPLG---AEQRQYVWASRAAGENLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQT 254

Query: 655 KQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + +A + H+  +        +     + D  R+ QI   ++ NA+ F+ +G  V ++A 
Sbjct: 255 CEIMALRAHQKGLEFTCRLSWQGSCLVLGDATRIRQILVNLIGNAIKFTERG-KVTVEAV 313

Query: 714 R-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           R       +N  F F V + G  IP D  + VF  F        RR  G GLGL+I    
Sbjct: 314 RWPAEESAENTWFGFVVSDTGIGIPPDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKL 373

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           + + GG + ++S +   +     IP 
Sbjct: 374 VQMMGGTIRLASREGEGSRFTVEIPL 399



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 13/171 (7%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           G + +A D   E  + D       IL ++   +   DQ   + F N     L   DL   
Sbjct: 16  GRSPVAFD--AEERLRDSEGRLSAILQSIGAGVIATDQQGRVAFLNPVAERLTGWDLVDA 73

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKEN---IFSVYKSSETHKDTWHLPNGQTLHVI 403
              P   E+L  +  A+  P     +  +E+   I    +     +   + P   T+  I
Sbjct: 74  LNRPVM-EVLNLVDEASGRPLTAPLQRVQEDGEIIDCSGELVLRSRQGKNYPVSCTVAPI 132

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
            + +   G +++F +   + +++              + + E +  +S  +
Sbjct: 133 ASFSGIIGCVFVFRDTIREREIQRNLLSAKEEAERASQAKSEFLASMSHEI 183


>gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
 gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
          Length = 1109

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/805 (16%), Positives = 299/805 (37%), Gaps = 67/805 (8%)

Query: 33   MLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET 92
            ++L + + I+   R +  +A++     +      D   + ++++   +   I+       
Sbjct: 306  VILFSTVIIVSNRRLKREMAERNRAEQAS----ADSAKQLNAIINTTDAGIILVSPLGVI 361

Query: 93   PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152
                 ++     +P  D     +   L         +   +L K     ++ + T +   
Sbjct: 362  EFANNRMADMFTLPLNDLIGTRYVERLHPSERQIGDERMRQLIKG----EIRSVTLDRHY 417

Query: 153  IKIEGRVSGSC--------AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
            I+ +G              A   + SL G+ S++         L    +  +     L+ 
Sbjct: 418  IRADGTDFWGHLSGSRMEHADGSLKSLVGVISDITHRKQAEDTLREMEATAQAAKRHLEE 477

Query: 205  L-------VWHRD-QAGDILWANISYK-----KNTETEGIVFQKAIGESRKLFKEEIKKR 251
                     W  +  +  ++W+   Y      ++T      F   I    +         
Sbjct: 478  AQRIAHLGSWQLNIVSNQLVWSKECYAIFGIQQDTSLTFESFVNCIHPDDRDLVSTAWSS 537

Query: 252  MISSSALEKNFCETVSTLEHGNNKSYKIV--RVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
             ++ +  +      V        +   IV     N+    G   D+++    ++ L    
Sbjct: 538  ALTGAPYDITHRICVGDKVKWVVEQADIVFDNNGNALHGVGTVQDITERKETDNALREAK 597

Query: 310  EILHNLTVAIAI----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
            E    +     +    +D        N  + E+    +  +    S  + ++++   ++ 
Sbjct: 598  ERFQFVIEGSQLGFWDWDIATGSVIRNERWAEMLGYTVQDIEN--SVRQWIDYIHPDDRD 655

Query: 366  PEQLNWKTWKENIFSVYKS-----SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
            P   + +   +    ++K+     ++  +  W L   + +       P         ++T
Sbjct: 656  PAMQSLQDHLDGKTEMHKAEYRMLTKAGQYRWILDQAKIVSRDSHGKPL-RMCGTHTDIT 714

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF----RSLWKTEENRLSP 476
             +  +        +     +D+L + V V+   G ++  N  F    R++ +  E  +  
Sbjct: 715  ERKQILNALQESEERYRNLVDNL-QNVVVYQITGDLE-GNRKFAYISRAVERLNEITVEE 772

Query: 477  GTHIRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL- 533
                 N+       +Y++E    ++ A  I++       +Q  L        E+++ P  
Sbjct: 773  VLTDANVIYRQILPQYHDELQLKEVEA--ISNHAPLHIEVQSLLPSGIVKWFEFTVSPRI 830

Query: 534  -PNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              + Q +     V++T   ++E+ L E   +   A+  K+ F+ ++S+E+R+P+  ++G 
Sbjct: 831  RHDGQIIWDGVEVDITHRKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGM 890

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            T LL+T+    L  +Q QY+  I  S+  L  L++DILDL+ +++G M L  +   L   
Sbjct: 891  THLLRTT---DLTPEQEQYLANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSC 947

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
            + ++  S    + +  IR+      +L  + + D+ R  QI   IL NA+ F+ +G   +
Sbjct: 948  IQDILSSQQFFIQQKAIRVTTEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQGQINI 1007

Query: 709  ILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
            + +    +        ++++ G  + E + + +F  FV       RR  G GLGL+I   
Sbjct: 1008 VAELVEQHDRDIHVRMAIRDTGIGMSEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRR 1067

Query: 764  FINLHGGHVSISSSDEGVTTINCRI 788
              +L GG + + S +   +     +
Sbjct: 1068 LADLMGGRIWVESREGAGSCFYIEL 1092


>gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 1000

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 120/686 (17%), Positives = 238/686 (34%), Gaps = 93/686 (13%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ----------AGDILWANISY 222
           G   E      +  +    +     L + L  L W  D            G + + N  +
Sbjct: 15  GESIEEIRGKKRADREETEVQEKSHLEEKLVRLEWQADSAVTGLITMDFDGTLSYVNPFF 74

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
            +               S +L+    +         EK            +   + +   
Sbjct: 75  VRMWGYGSAEEPPGRQVS-ELWASPAEFLQAERECREKGEWIGELQARRRDGTFFYVHTS 133

Query: 283 LN--------SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           L+          G +G  +D+++   V ++L +    L  L+ A A  D    L      
Sbjct: 134 LSLIRNREGLPLGISGSFVDITRLKQVEEELRN--RTLE-LSEAKARLD----LAL---E 183

Query: 335 FVELWEIDLAFLATNPSNDELL---------EFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             E+   D   L    + D+ L         EFL++ + L E  N     E+   + +  
Sbjct: 184 ATEMGTWDWDVLTNGMTWDDNLFRLVGISREEFLQTHDSLLELSNRILSPEDNRRMLEVM 243

Query: 386 ETHKDT----------WHLPNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLETK 428
           +   D              P+G   H  V   ++               ++T Q   E  
Sbjct: 244 QAVADGKTDSYEFEHDVLRPDGTVRHFLVKGRAHRDSEGKLLRVTGTTTDITDQKIAEDA 303

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE------NRLSPGTHIRN 482
                     +      G   F         +   +++W  +         +    H  +
Sbjct: 304 LRRSEANLARSQAMAHLGSYSFDAHTGEIYWSEELKTIWDYDPGPNYSFETVISRIHPED 363

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTM 539
                    N   G   F +             G++  + D     L+ + +P+   +  
Sbjct: 364 RKRILEALKNAGQGKHPFNSEYGILKP-----DGSIRYVHDQGEISLDGNGVPV---RMF 415

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            T  ++T     E  L +  EA   A++ K  F+ ++S+E+R+P+  ++G  ++L  +  
Sbjct: 416 GTLQDITHRKLMEEQLLKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLET-- 473

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            SL  +Q +Y++   AS+  LL++++D+LD + ++   ++L   +  L  L++ +   ++
Sbjct: 474 -SLTDEQREYLQLAHASAESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLS 532

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAA 713
            K     +++    +  L  +F+ D  RL Q+   IL NA+ F+ KG       V + + 
Sbjct: 533 GKAGSKGLKLAFHIEKDLPSTFIGDPVRLKQVLFNILGNAIKFTKKGEIALSVEVYMPSE 592

Query: 714 RDNG----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           R++G            +F VK+ G  IP +    +F+ F+        +  G GLGL+I 
Sbjct: 593 RNSGLSNSDFPEEVALLFKVKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAIS 652

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
              + L  G + + S      T    
Sbjct: 653 SQLVELMEGRIWVESEVGKGCTFYFT 678


>gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1245

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 115/658 (17%), Positives = 242/658 (36%), Gaps = 67/658 (10%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +E  E     + L   ++  K   D    +V   D AG I++AN  +       G    +
Sbjct: 18  TEQKEADQALRSLLREVNFQKYALDQH-AIVSATDAAGRIIYANEKF---VSISGYERDE 73

Query: 236 AIGESRKLF-----KEEIKKRMISSSALEKNFCETV-STLEHGNNKSYKIVRVL------ 283
            +G++ ++           + M  +    + +   V +  + G     +   V       
Sbjct: 74  LLGQNHRILKSTEHPPAFYQEMWRTIQKGETWHGEVKNNKKQGGYYWVRATIVPFMDDKG 133

Query: 284 NSFGEAGIAIDVSKEITVND-------QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                  I  D++++            ++      L    + ++I D++ ++ + N  F 
Sbjct: 134 KPEQYVSIRTDITEQKESERKLISLLHEVNFQKHALDQHAI-VSITDRDGFITYINEPFS 192

Query: 337 ELWEIDLAFLATNPS---NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            +       +        +  + +     +      + K WK  + +  K          
Sbjct: 193 LITGYSELEIVGGKHRLLHSGVHDHAFYRDLWGTISSGKAWKGELCNRAK---------- 242

Query: 394 LPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             NG+   V     P           I +  ++T + ++E +      +    +   + G
Sbjct: 243 --NGKLFWVSTAIVPFMNEAGQVERYISIQTDITQRREIERELENNNYLSDMALRLSNSG 300

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
                 +      +   ++L   +        HI++      R  + +    +FA    S
Sbjct: 301 YWHLLLEDEGYYISSERKALIMGDPPHPGFRYHIQDDWLANIRKTDPAMAEQVFANFTQS 360

Query: 507 FDDER---------KSLQG-TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
               +         + + G T+ L +   +E      P  +      ++T    AER + 
Sbjct: 361 IATGQDIHFSYPYVRPVDGRTIWLETAGYVERDETGKP-YRVYGVTQDITTRRAAEREIL 419

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              E   +A + K+ F+ ++S+E+R+P+  IIG + L   ++   L+ KQ  Y+  I  +
Sbjct: 420 RAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLALQTE---LSRKQQDYINKIHNA 476

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL ++NDILD + ++AG + +     +L+D L  +   IA K  E  + + +  D  
Sbjct: 477 ANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLTNLIAVKAREKGLELLIAMDPA 536

Query: 677 LGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIP 731
           +    + D  RL QI   +++NA+ F+  G  V+    ++A        FS+ ++G  + 
Sbjct: 537 VPDGLIGDDLRLGQILVNLVNNAVKFTDTGEIVVRVKQVEANDREVMLQFSISDSGIGMT 596

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           E     +FN F        R   G GLGL+I +    +  G + + S+    +T    
Sbjct: 597 EAQVAKLFNSFSQADASTTRKYGGTGLGLTISKKLTEMMHGKIWVESTPGVGSTFLFT 654



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 72/205 (35%), Gaps = 37/205 (18%)

Query: 412 TIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            +   +++T Q + +    +L++    Q   +D     V+     GRI  +N  F S+  
Sbjct: 10  MVGTVQDITEQKEADQALRSLLREVNFQKYALDQ-HAIVSATDAAGRIIYANEKFVSISG 68

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---- 524
            E + L    H         R    ++    F   +     + ++  G ++         
Sbjct: 69  YERDELLGQNH---------RILKSTEHPPAFYQEMWRTIQKGETWHGEVKNNKKQGGYY 119

Query: 525 VLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEI----------- 568
            +  +I+P  +      Q +    ++T+   +ER L      +                 
Sbjct: 120 WVRATIVPFMDDKGKPEQYVSIRTDITEQKESERKLISLLHEVNFQKHALDQHAIVSITD 179

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL 593
           ++ F+ +++     P + I G+++L
Sbjct: 180 RDGFITYIN----EPFSLITGYSEL 200


>gi|239908790|ref|YP_002955532.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798657|dbj|BAH77646.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 979

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 133/670 (19%), Positives = 245/670 (36%), Gaps = 67/670 (10%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIVFQ 234
            +++E     + L    S FK LF          D+  G+I+ AN +   +     +   
Sbjct: 320 QDISERKQAEEALRASESQFKSLFSQSPISNLIHDKDSGEIIDANTAAFVSYGYSSVEEL 379

Query: 235 KA--IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFGE 288
           KA      R    EE    +  ++       E +S    G      +    V +      
Sbjct: 380 KAGKFWLERPYSLEEALAWIRKAADQGPQRFEWLSRRVTGELFWEHVHLSPVVINGVERI 439

Query: 289 AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DL 343
               ID+++    E+ + DQL     ++  +  A+   D        N ++ E + I   
Sbjct: 440 LASGIDITERKRLEMRLADQLAFKQALMDTIPYAVFYKDAETRFMGCNIAYEETFGIKRE 499

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NG---- 397
            F+     + E L         PEQ +   ++    +   S    +    +P  +G    
Sbjct: 500 DFIGKRVLDLEYL---------PEQ-DRHIYQAEDEATIASVGYVRKEMAIPFVDGLIHQ 549

Query: 398 QTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
               V       G   G I +  +++                   I+++ +        G
Sbjct: 550 TLYSVNGFRQADGTPGGIIGVIVDISDLKRAGVALRESEARYRSIIENIQDMYYRTDVQG 609

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           R+ L +P+       +      G    +          E         ++  ++   K+ 
Sbjct: 610 RLVLLSPSTPKQLGYDSVDEVLGCLASDFWMQ-PELRQELLLRIKTEGVVKDYEVLLKAK 668

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE------------------RALT 556
            G   L+S +   Y             F ++T+  R E                  R LT
Sbjct: 669 DGKPLLVSATSAYYHDDEGNVLGVEGIFRDITERKRGEEALKKSRDELEERVAERTRELT 728

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------------TSKLGSLN 603
           E N  L + D +K++F+  VS++LR+PLT+I+GF+ +++              S L +  
Sbjct: 729 EANARLTELDNLKSAFLNTVSHDLRTPLTSILGFSKIIQRDFTRRFLPLAEGDSVLRNKA 788

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKM 662
           SK    +  I +    L  LV+D LDL+ ++ G       T  L  L+     S+    +
Sbjct: 789 SKILDNLGVIVSEGERLTRLVSDFLDLSRIEDGRYVWKDKTTDLGVLIRGAVSSMKGALL 848

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++ ++I+V +D  L +   D  R+ Q+ + +LSNA+ F+S+G TV L A    G    S
Sbjct: 849 QKHGVQIRVDADSHLPALWVDPDRIAQVLTNLLSNAIKFTSEG-TVTLTARASTGSIRVS 907

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP D    +F++F           +G GLGL+I +  +  + G + + S+   
Sbjct: 908 VADTGMGIPPDELPMIFDKFYQVGDDTLVAEKGTGLGLAICKQIVEHYDGAIWVESTQGV 967

Query: 781 VTTINCRIPS 790
            +     +P 
Sbjct: 968 GSVFFFELPL 977



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 140/406 (34%), Gaps = 62/406 (15%)

Query: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLRKEG----QSFDLVAETQNDCAIKIEGRVSGS 162
            +  +L + + WL       L +A   +RK      Q F+ ++        ++ G +   
Sbjct: 374 SSVEELKAGKFWL--ERPYSLEEALAWIRKAADQGPQRFEWLSR-------RVTGELFWE 424

Query: 163 CAFLRILSLDGIYS------ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
              L  + ++G+        ++ E      +L++ ++  + L D++ + V+++D     +
Sbjct: 425 HVHLSPVVINGVERILASGIDITERKRLEMRLADQLAFKQALMDTIPYAVFYKDAETRFM 484

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIK-----KRMISSSALEKNFCETVSTLEH 271
             NI+Y++    +   F        +   E+ +     +   + +++     E       
Sbjct: 485 GCNIAYEETFGIKREDFIGKRVLDLEYLPEQDRHIYQAEDEATIASVGYVRKEMAIPFVD 544

Query: 272 G--NNKSYKIVRVL----NSFGEAGIAIDVSKE----ITVNDQLTHTYEILHNLTVAIAI 321
           G  +   Y +           G  G+ +D+S      + + +       I+ N+      
Sbjct: 545 GLIHQTLYSVNGFRQADGTPGGIIGVIVDISDLKRAGVALRESEARYRSIIENIQDMYYR 604

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-PEQLNWKTWKENIFS 380
            D    L   + S  +    D        S DE+L  L S   + PE       +     
Sbjct: 605 TDVQGRLVLLSPSTPKQLGYD--------SVDEVLGCLASDFWMQPELRQELLLRIKTEG 656

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTIW----MFENLTVQVDLETKYNTLV 433
           V K    ++      +G+ L V  TS   +   G +     +F ++T +   E     L 
Sbjct: 657 VVK---DYEVLLKAKDGKPLLVSATSAYYHDDEGNVLGVEGIFRDITERKRGEE---ALK 710

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           K + E  + ++E          +  +N     L   +   L+  +H
Sbjct: 711 KSRDELEERVAE------RTRELTEANARLTELDNLKSAFLNTVSH 750



 Score = 44.2 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 87/288 (30%), Gaps = 31/288 (10%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL +  + +AI D    L  H+    ++        A +P  +  LE + S       + 
Sbjct: 216 ILGHAPIGVAICDNRSRLLAHSAELGKM--------AGHPGENATLESVLSRAFPEASVA 267

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNG--QTLHVIVTSNPRGG------TIWMFENLTVQ 422
               +  +FS     E  ++     NG  +  H+ +    R           + ++++ +
Sbjct: 268 LSMLQRQVFSGALKVE--REVRFETNGTPRYWHISMFPIARDDANHPLLICTLIQDISER 325

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTE--------ENR 473
              E                      +   D G I  +N A    +           +  
Sbjct: 326 KQAEEALRASESQFKSLFSQSPISNLIHDKDSGEIIDANTAAFVSYGYSSVEELKAGKFW 385

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIP 532
           L     +    A   +  ++  G   F  +      E       L  ++ + V       
Sbjct: 386 LERPYSLEEALAWIRKAADQ--GPQRFEWLSRRVTGELFWEHVHLSPVVINGVERILASG 443

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ-HVSYE 579
           +   +     + + D +  ++AL +         + +  F+  +++YE
Sbjct: 444 IDITERKRLEMRLADQLAFKQALMDTIPYAVFYKDAETRFMGCNIAYE 491


>gi|171060844|ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170778289|gb|ACB36428.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 490

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 110/485 (22%), Positives = 200/485 (41%), Gaps = 14/485 (2%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           + +L  A  +      +   N    E++    A    +    +L+E +   ++   Q  W
Sbjct: 11  IDDLPDACFVLSSTGIVLQWNAGAEEVFGHSAAQALGH----DLIELVVPDDQAGPQRAW 66

Query: 372 -KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKY 429
             T      S  ++    +D   L    T  ++     +   I + E ++T+ + ++   
Sbjct: 67  LATTLAGGPSTCEAVRRRRDGSLLCVDVTSRMLPAPPGQPARILVVEKDVTL-IKVQRDA 125

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             +     E ++   +G+ +  P G I ++N     L+      L  G  +  +     R
Sbjct: 126 KLMEARFRELLESTPDGIVMVNPTGHIVIANSQAERLFGYPPGGLR-GRSVDQLLPERYR 184

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVT 546
           + + +     F             L G     ++  +E S+ PL     A  M    +++
Sbjct: 185 HAHVAHRSQYFLQPRKRAMGSGLDLAGLRRDGTEFPIEISLGPLRTEDGAFVMSAIRDIS 244

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R ERAL EKN  L  A+E K  F+ ++S+ELR+PL  IIGFT  L     G L   Q
Sbjct: 245 ERKRFERALQEKNVELAAANEAKTRFLANMSHELRTPLNAIIGFTGTLLMRLPGPLTPDQ 304

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  + AS   LL L+ND+LD+A ++AG  +++   + +  LL+EV  ++  +     
Sbjct: 305 ERQLRTVQASGRHLLALINDLLDVAKIEAGKAQIHLEMLDVGALLHEVVSTLHPQAVAKG 364

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + + +          +DR+ L QI   ++ NA+ F+  GS + +      G F   V + 
Sbjct: 365 LALTLSVPEPALQCESDRRMLNQIVINLIGNAIKFTDAGS-IHVGLRARAGGFEIEVTDT 423

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F        R   G GLGL + +    L GG + + S     +  
Sbjct: 424 GIGIGTDDQAKLFGAFSRVVSSQGRVAEGTGLGLHLSQKLAALLGGTIDVRSEAGRGSCF 483

Query: 785 NCRIP 789
           + R+P
Sbjct: 484 SLRVP 488



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 71/262 (27%), Gaps = 26/262 (9%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGESRKL 243
               +      D L    +     G +L  N   ++       +  G    + +    + 
Sbjct: 1   MRESATLDASIDDLPDACFVLSSTGIVLQWNAGAEEVFGHSAAQALGHDLIELVVPDDQ- 59

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFGEAGIAI----DVSK 297
                +  + ++ A   + CE V     G+     +    +    G+    +    DV+ 
Sbjct: 60  -AGPQRAWLATTLAGGPSTCEAVRRRRDGSLLCVDVTSRMLPAPPGQPARILVVEKDVTL 118

Query: 298 EITVNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                D         E+L +    I + +   ++   N     L+      L     +  
Sbjct: 119 IKVQRDAKLMEARFRELLESTPDGIVMVNPTGHIVIANSQAERLFGYPPGGLRGRSVDQL 178

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG 410
           L E  R A+       +   ++            +      +G    + ++  P     G
Sbjct: 179 LPERYRHAHVAHRSQYFLQPRKRAMGSGLDLAGLR-----RDGTEFPIEISLGPLRTEDG 233

Query: 411 GTIWM-FENLTVQVDLETKYNT 431
             +     +++ +   E     
Sbjct: 234 AFVMSAIRDISERKRFERALQE 255


>gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1705

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 99/514 (19%), Positives = 202/514 (39%), Gaps = 44/514 (8%)

Query: 299  ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLE 357
                 +L    +++    + I I D    ++  N +F  L        +  NP       
Sbjct: 698  EERTHELRKLAQVVEQNPLCIVITDVEGRIEHVNPAFTRLTGYAREEAIGENP------- 750

Query: 358  FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIW 414
             L  ++  P +L  + W   +     + E         +G+   V V+  P   R G + 
Sbjct: 751  RLLKSDLNPPELYVELWDTILSGRTWNGEICN---RKKDGEFYWVSVSIAPVTNRRGQVT 807

Query: 415  MF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGV--AVFGPDGRIKLSNPAFRSLWK 468
             F    ++LT +  ++ +     ++    +  +   V   +   D  +   +     L  
Sbjct: 808  HFVAMSQDLTERRRIDEELAARERLFRNLVSTIPGTVFRCLIDSDWTMLFISDEIERLSG 867

Query: 469  TEENRLSPG--------THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
               +              H  ++ A   +  + +    L   +     D    +    E 
Sbjct: 868  YPASAFIHKGVRTYTSLIHPDDV-AHVEQLIDAAVSRHLPYTVEYRIIDREGRIHHVYEQ 926

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
               S  + +  P+  A T++   +++D   AE  L    E   +A + K+SF+ ++S+E+
Sbjct: 927  GQASY-DSAGAPIDLAGTVI---DISDRKAAEVELLAAKELAEEATQAKSSFLANMSHEI 982

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+P+  IIG + L   ++   L+++Q  Y+E +  S+  LL ++NDILD + ++AG + +
Sbjct: 983  RTPMNAIIGLSHLALQTE---LDARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDI 1039

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAM 699
             +    L D+++ +   +  K  E  + +      ++ +  V D  RL QI   + +NA+
Sbjct: 1040 EHIAFRLEDVMDNLANLVGLKAEEKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAV 1099

Query: 700  DFSSKGSTVILKAAR--DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
             F+  G  +++         D++   FSV + G  +  +    +F  F        R   
Sbjct: 1100 KFTEPGGEILISVRVMDQGADWVRLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYG 1159

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            G GLGL+I      L GG + + S+    +T   
Sbjct: 1160 GTGLGLTISTRLTELMGGEIRVESAPGAGSTFGF 1193



 Score = 46.1 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 97/295 (32%), Gaps = 46/295 (15%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
                  +  ++ ++ +     + +     +   D  G I   N ++ + T   G   ++
Sbjct: 688 RTRTRLNVLVEERTHELRKLAQVVEQNPLCIVITDVEGRIEHVNPAFTRLT---GYAREE 744

Query: 236 AIGESRKLFKEEIKK-----RMISSSALEKNFCETV-STLEHGNNKSYKIV--RVLNSFG 287
           AIGE+ +L K ++        +  +    + +   + +  + G      +    V N  G
Sbjct: 745 AIGENPRLLKSDLNPPELYVELWDTILSGRTWNGEICNRKKDGEFYWVSVSIAPVTNRRG 804

Query: 288 E----AGIAIDVSKEITVNDQLTHTYEILHNLTVAI------AIFDQNRYLQFHNRSFVE 337
           +      ++ D+++   ++++L     +  NL   I       + D +  + F +     
Sbjct: 805 QVTHFVAMSQDLTERRRIDEELAARERLFRNLVSTIPGTVFRCLIDSDWTMLFISDEIER 864

Query: 338 LWEIDL-AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           L      AF+            +R+   L    +    ++ I +       +   + + +
Sbjct: 865 LSGYPASAFIHKG---------VRTYTSLIHPDDVAHVEQLIDAAVSRHLPYTVEYRIID 915

Query: 397 --GQTLHVI----------VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             G+  HV                  GT+    +++ +   E +     ++  E 
Sbjct: 916 REGRIHHVYEQGQASYDSAGAPIDLAGTVI---DISDRKAAEVELLAAKELAEEA 967


>gi|163793735|ref|ZP_02187709.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180846|gb|EDP65363.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 1233

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 103/523 (19%), Positives = 202/523 (38%), Gaps = 45/523 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            +    +        +  L    A+FD +  L   N++++E+++   A +      ++ +
Sbjct: 294 AQRREEEARNRLIGAIEALPDGFALFDTDDRLALFNQTYIEMYKASGALIKLGTRFEDGI 353

Query: 357 EFLRSANKLPEQLN----WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            +     + P+ L+     + W       +++ E   +   LP+G+   V     P G  
Sbjct: 354 RYGVEQGQYPQALSHPDGPEAWVRERVERHQNPEGPIEQ-RLPDGRWARVWERRTPNGEI 412

Query: 413 IWMFENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGP-----------------DG 454
           +    ++T Q  +      L ++   + +D                            DG
Sbjct: 413 VGFRVDITWQKQVSETLQRLQEIGSNDALDPADRLAKATDLTLEMTGLDVGAILKAVGDG 472

Query: 455 RIKLSNPAFRSLWKTEENRL----SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
           R ++   +  +L       +    + G     +       +         A +++     
Sbjct: 473 RYQIIAASGVALPGVSVGYIVRAEADGRDDTTLLPINPPLHVPVTVDGRDAGLLS----- 527

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
             S  GT+E  SD   + +       +             A   L    E    A E K+
Sbjct: 528 LGSTSGTVE-FSDRQRDLA------ERIAHWIGIEVSRQEALDELRRAKEEAEAASEAKS 580

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+E+R+P+  ++G   L+  S+   L ++Q   +     S+  LL ++NDILD 
Sbjct: 581 RFLAMMSHEIRTPMNGVLGMIGLVLRSE---LTAEQRSMITLAKQSADNLLMILNDILDF 637

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + +++G + L      L D+++ V + ++ +     + I    D ++  + + D  RL Q
Sbjct: 638 SKLESGRLDLEEVEFDLADVISSVAELLSPQAEAKGLDIISFIDTRMTLARLGDPGRLRQ 697

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           I   ++ NA+ F+  GS VI     D  +  F V + G  IP D    +F  F       
Sbjct: 698 ILINLVGNAVKFTGSGSIVIRLEPADGDEVRFDVIDTGIGIPADTLPLLFQEFTQADSSV 757

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RR  G GLGL+I E    L GG +S++S++   +T +  IP 
Sbjct: 758 SRRFGGTGLGLAICERLTRLLGGTISVTSTEGTGSTFSVIIPL 800



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/330 (12%), Positives = 90/330 (27%), Gaps = 45/330 (13%)

Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            +    +         ++              +  +  V D L      L  + +    F
Sbjct: 118 ADHAKAVLSWERLILPVMDATGQPLIVCFNAPLDNKADVFDALMKNS--LDGIMLMRPAF 175

Query: 323 DQNRYLQ-----FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
             +  ++       N+   E+       L    +   ++       +       + W  +
Sbjct: 176 GADGEIEDFTVMVANQRAAEILGTTPDDL----TGSGMIARYPRTRRTTFPRYCRIWAGD 231

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTS-NPRGGTIWMFENLTVQVD----LETKYNTL 432
               +          + P G      V++       +    ++T   +    LE +   L
Sbjct: 232 GAERF-------TVDYRPEGMPAVFQVSACRATDRLVVTLADITEIAETQAVLEKQQRQL 284

Query: 433 VKVQGE-----------------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +                      I+ L +G A+F  D R+ L N  +  ++K     + 
Sbjct: 285 EEAVQSRTIAQRREEEARNRLIGAIEALPDGFALFDTDDRLALFNQTYIEMYKASGALIK 344

Query: 476 PGTHIRNIAATC---SRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSI 530
            GT   +         +Y       D   A +    +  ++ +G +E  L          
Sbjct: 345 LGTRFEDGIRYGVEQGQYPQALSHPDGPEAWVRERVERHQNPEGPIEQRLPDGRWARVWE 404

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              PN + +   V++T   +    L    E
Sbjct: 405 RRTPNGEIVGFRVDITWQKQVSETLQRLQE 434


>gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
 gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
          Length = 590

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 164/376 (43%), Gaps = 28/376 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E++T Q   + +  TL       I+++  G+ +    G I L N A++  +    +  
Sbjct: 234 LQESITNQEMQQDRLRTL-------IENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDF 286

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                          YY   +  ++   +   F  E K  +  +  L+   +E     + 
Sbjct: 287 LYHL-----------YYEVFEHKEIIKLVEKIFMTEVKVRKQVVLPLN---IERRYFDVY 332

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  +       D  +    +      L+K ++++  FV +VS+EL++P+T+I GF++ L
Sbjct: 333 GAPIIGLN----DEWKGIVLVFHDITELKKLEQVRRDFVANVSHELKTPITSIKGFSETL 388

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +     +Q Q++  I   S  + +L+ D+LDL+ V+    KL+  ++ LN LL EV
Sbjct: 389 LDGAMEDPQLRQ-QFLSIILTESQRMESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEV 447

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              ++ +  E  I + + +  +      D QRL+Q+F  ++ NA+ ++  G TV +    
Sbjct: 448 TTVLSNRATEKEITLTLDTLPEEAWIDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEE 507

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
           +       V++ G  I  D    +F RF            G GLGL+IV+  +  H G +
Sbjct: 508 EEETITVHVQDTGIGIDSDEISRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGEI 567

Query: 773 SISSSDEGVTTINCRI 788
            + S     TT + ++
Sbjct: 568 EVKSEVNKGTTFSVKL 583



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 290 GIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            +A ++ + IT  + Q      ++ N+   + + D   Y+   NR++ E + I       
Sbjct: 229 ALARNLQESITNQEMQQDRLRTLIENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDFLY 288

Query: 349 NPSNDELLEF-----LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           +    E+ E      L     + E       ++ +         + D +  P      +I
Sbjct: 289 H-LYYEVFEHKEIIKLVEKIFMTEVKV----RKQVVLPLNIERRYFDVYGAP------II 337

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYN 430
             ++   G + +F ++T    LE    
Sbjct: 338 GLNDEWKGIVLVFHDITELKKLEQVRR 364


>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
          Length = 1266

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 158/383 (41%), Gaps = 21/383 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE              +H  + + +  PDG +   N A      T+E+ +      
Sbjct: 369 ERKRLENIQKESELKFKVLYNHTFQLMGLMAPDGIMLSVNEAALESTGTKESDIVEKLFW 428

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                + S    E     +  A    F      +     +L D  ++YSI P+ +     
Sbjct: 429 DAPWFSYSEEVKEMVRDSVIKAAAGQFIRFETQIHLKNNILQD--IDYSIKPVEDESGNA 486

Query: 541 TF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                   ++T+  R E+ L +  E    A   K+ F+ ++S+E+R+P+  II  ++LL 
Sbjct: 487 IMLIAEGRDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELLS 546

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 ++ K   Y+  I+ S+  LL ++NDILD++ ++AG + L      + D+++++ 
Sbjct: 547 NE---DISDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDKLV 603

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                +  +  I + V  D ++  +   D  RL QI   ++SNA+ F+ KG  +I+    
Sbjct: 604 NMFFHRTSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVGVKE 663

Query: 715 DNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
                         F +K+ G  I  +  + +F  F        R   G GLGL I +  
Sbjct: 664 LENRSAESGEVKLRFFIKDTGIGIAHENIEKIFEPFSQADASTTRNYGGTGLGLCICKQL 723

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           + + GG + + S  E  +T +  
Sbjct: 724 VEMMGGEIRVESEPEKGSTFSFT 746


>gi|301161869|emb|CBW21413.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 929

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 122/656 (18%), Positives = 254/656 (38%), Gaps = 53/656 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAG-----DILW 217
            + SL  I S   E      +     S  + LF  +      +   RD AG      I  
Sbjct: 283 WLSSLANIISICIELRKAKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIAD 342

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA--LEKNFCETVSTLEHGNNK 275
           AN     ++E  G+     +G        + K ++             ET          
Sbjct: 343 AN---DLSSELIGMSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRS 399

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
           S+ IV          + +D ++ I  +  L  + +    I  N+   + I+D++  L   
Sbjct: 400 SHCIVYSPEKDEVVALFLDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDL 459

Query: 332 NRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           N   +E +        + + F        E+ E +R+ + +  +LN+          Y S
Sbjct: 460 NNWDMETFGVKDKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLNYS--FNKASDYYHS 517

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +++    +    +        N   G + +  + T ++D   +            D+  
Sbjct: 518 DKSNIIELYTKVSKLFDSQGNFN---GYVLINIDNTERIDAINRIRDFENFFLLISDYAK 574

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG--WDLFAA 502
            G A         LS   +      +    +    + ++     + + E     +D +  
Sbjct: 575 VGYAKLN-----LLSKRGYAIKQWFKNMGETEDIPLSSVVGVYDKMHPEDRQKVFDFYEK 629

Query: 503 IITSFDDERKSLQGTLELLS---DSVLEYSII------PLPNAQTMLTFVNVTDSVRAER 553
           ++   + + +S    L+  +    + +  +++           + +    ++T+    E 
Sbjct: 630 VLAGEEKDFRSEMRILKPGATNEWNWVRMNVVVTKFEPEHGEVEIIGINYDITELKETEA 689

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y++ +
Sbjct: 690 MLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTEDM---EERCEYIKIV 746

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +  + +    
Sbjct: 747 QENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNILCEDIVRSSQIKVPQ-GVELVFDP 805

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                + ++DR RL Q+ S  ++NA+ F+S GS + +   +      F V + G  I ++
Sbjct: 806 HPSDCTVISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKE 864

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RFV         G GLGLSI +S +   GG + + S +   +     IP
Sbjct: 865 QLTHIFERFVKLNSFIH--GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918


>gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 742

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 172/369 (46%), Gaps = 11/369 (2%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E +     + +   +D L+E V    P   I  +N A        +   + G H++ I 
Sbjct: 361 AEQELKVQEREKKVLLDSLNEMVIFVNPQLNIVWANKAALEYMH-MDLEKAKGIHLKAIP 419

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           +            ++F++        ++S + T E  +   ++ + +   + + +     
Sbjct: 420 SMSGPLVEHLPLEEIFSS------GNKESGEFTTEDGNSWSIQATPVTDDDGKIIGVLET 473

Query: 545 VTDS--VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             D    +A   L ++ +    A+  K+ F+ ++S+ELR+PL +IIGF+DLL     G L
Sbjct: 474 FRDITGKKAVEKLIQEKQIAEIANRTKSEFLANISHELRTPLNSIIGFSDLLCEQIFGEL 533

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N KQ +Y   IS S   LL+L+NDILDL+ V+AG M+L+Y+   L   LN +K  +A   
Sbjct: 534 NEKQLRYAGNISKSGKHLLSLINDILDLSKVEAGKMELDYTEFELAGKLNTIKNLLAPIA 593

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +I+I++  D +L +  AD  +  QI   ++ NA+ F+S+ S V + A         +
Sbjct: 594 DRKSIQIEIEVDSRLTNLYADEAKFAQIMYNLVDNAIKFASENSPVNVGARMKGDKVEIT 653

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G+ I  +    +F  F         Q +G GLGL +V+  + +H G+V   S    
Sbjct: 654 VTDIGAGIKPEDQHKLFKPFSQVDYFASKQHQGTGLGLYLVKQIVQMHRGYVWFRSVPGE 713

Query: 781 VTTINCRIP 789
            +T    IP
Sbjct: 714 GSTFAFAIP 722


>gi|116251211|ref|YP_767049.1| two component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255859|emb|CAK06940.1| putative two component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 769

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 123/530 (23%), Positives = 218/530 (41%), Gaps = 66/530 (12%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---------LAFLATNPSNDELLE 357
                L      +  FD      F +RS  ++  +           A    +P +  L E
Sbjct: 256 RVETALSRGRCGLWDFDFENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMHPDDGGLYE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
             R+  K           + IF +  +   +   W     Q   VI +++ R   I +  
Sbjct: 316 IARAIGKGS-----SGQVDQIFRMRHAGGHY--VWMRARAQ---VIRSNSGRMHLIGIAM 365

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N  F+  +   ++ L PG
Sbjct: 366 DVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPG 425

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T    + A  +R         +    I+  D    S    ++L  +  L+ +     +  
Sbjct: 426 TERSTVNAAAAR--------PVIERRISDADGSGYSRTTEVQLADERWLQINERRTRDGG 477

Query: 538 TMLTFVNVTDSVRAERALTE-----------------------------------KNEAL 562
            +    ++T   R +  L E                                   + E  
Sbjct: 478 RVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERA 537

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILL 621
             A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L S K  +Y   I  S   LL
Sbjct: 538 EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLL 597

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N++NDILD++ ++AG ++L+   I L  L+ E  +  A    E NI I+      L + +
Sbjct: 598 NVINDILDMSKIEAGHVRLHCERIDLVPLIEESLRFTAMPAAEKNIVIEQRICSGL-TLM 656

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR+ + Q+   +LSNA+ F+  G  + L+  R +G    ++ + G  IP      +   
Sbjct: 657 ADRRAMKQVLLNLLSNAVKFTDNGGRIALRTRRVDGAVFVTIADTGIGIPRSALSKIGQP 716

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V + +   + G GLGL+I  S  +LHGG + I S +   T I+ RIP
Sbjct: 717 FEQVQSQYAKSKGGSGLGLAISRSLTSLHGGRMKIRSREAVGTVISLRIP 766



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 14/160 (8%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++  +  +     + L +     + A  ++D+N  L   N  F + + +  +
Sbjct: 361 IGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDS 420

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            L        +     +A  + E          I     S  +      L + + L +  
Sbjct: 421 VLVPGTERSTV--NAAAARPVIE--------RRISDADGSGYSRTTEVQLADERWLQINE 470

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                GG + +  ++T+    + +     +    TI  LS
Sbjct: 471 RRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 510


>gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 590

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 166/393 (42%), Gaps = 29/393 (7%)

Query: 402 VIVTSNPRGGTIW-MFENLTVQVDLETKYNTLV-KVQGETIDHLSEGVAVFGPDGRIKLS 459
           + V S+   G +  MF  LT ++    +  +   +     + ++++GV      G +   
Sbjct: 220 IEVKSDDEIGKLTEMFNFLTSRLKATLEVISEEKEKMEAILTNMADGVIALNGRGEVIHI 279

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           NPA R + + EE++L                       ++F      F    ++    L 
Sbjct: 280 NPAARRMLQLEEDQLGQDF--------------AEKLREIFKINPEDFQKTEQTQLEVLV 325

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + D  L+    PL     +  ++ +   +  ++ L          +E++  FV +VS+E
Sbjct: 326 KVRDGTLKAIFAPLVGDGRVTGYILLLQDITKQQRL----------EEMRKEFVANVSHE 375

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT I  + + L    L   +S   Q++  I+  +  +  LVND+L+L+ +D     
Sbjct: 376 LRTPLTTIKSYAETLLDGALDD-SSVARQFLSVINDEADRMTRLVNDLLELSRLDNRETN 434

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            +   I ++ +L  V   +   + +  + ++      L    AD  ++ Q+F  ILSNA+
Sbjct: 435 WDKKPIRIDGVLTAVISKMMVSVRKKGLELECDLPEDLPKVFADSDKMEQVFQNILSNAI 494

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            ++ +G  + +KA         S+++ G  IP++    +F RF        R   G GLG
Sbjct: 495 KYTPEGGRIFVKAENLGSQVQVSIRDTGIGIPKEDLPRIFERFYRVDKTRSRQLGGTGLG 554

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LSI    +  H G + + S     T +  ++P+
Sbjct: 555 LSIAREIVLAHEGEIKVESELGQGTEVIIKLPA 587



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 18/136 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             ++++      IL N+   +   +    +   N +   + +++   L       +  E 
Sbjct: 247 EVISEEKEKMEAILTNMADGVIALNGRGEVIHINPAARRMLQLEEDQLGQ-----DFAEK 301

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWM 415
           LR   K+    +++  ++    V              +G    +       G   G I +
Sbjct: 302 LREIFKI-NPEDFQKTEQTQLEVLVKVR---------DGTLKAIFAPLVGDGRVTGYILL 351

Query: 416 FENLTVQVDLETKYNT 431
            +++T Q  LE     
Sbjct: 352 LQDITKQQRLEEMRKE 367


>gi|330503188|ref|YP_004380057.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
 gi|328917474|gb|AEB58305.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
          Length = 1230

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 127/716 (17%), Positives = 264/716 (36%), Gaps = 65/716 (9%)

Query: 117 NWLKFHHYIKLSKATEKLRKEGQS---FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
            W      + +  A   +   G +   F    E+Q   A+   G ++     L +     
Sbjct: 187 RWALMLSALVMGLAISGMHYTGMAAARFVGTPESQTPMAVVDSGYIAIGITLLTVALTIF 246

Query: 174 IYSELAETTLKC--KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN------ 225
           + +       +    +L       + +FD+    +   D  G +  AN +  +       
Sbjct: 247 VVAANTLLRYRHMSHQLKASEQHLRSIFDTALDAIITVDHTGTLRSANRAVLRLFGWTPE 306

Query: 226 ----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
                    +V  + I +   L  + ++   ++  + E+     V     G  K  +I  
Sbjct: 307 ELVGLHMSTLVPARLIDKVEGLVADYLRTGQLTMMSGEQEL---VCLTREGEEKPVRISV 363

Query: 282 VLNSFGE----AGIAIDVSK----EITVNDQLTHTYEILHNLTVAI---AIFDQNRYLQF 330
            +   G          D+S+    E+ +         ++ N+   +    + D+N  + F
Sbjct: 364 GITHAGSRPLFVVFVADISERQHMEMALRRSEQQYRSLISNIP-GVSFRCLLDRNWSMLF 422

Query: 331 HNRSFVELWEIDLA-FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            + +  +L       F++   S  +L              +++   + + +  +    + 
Sbjct: 423 ISDAVEKLTGYSADDFISRRCSIADLY----------HPDDYQPTADQVVAAIEEGRNYT 472

Query: 390 DTWHLPN--GQTLHVIVTSNP----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
             + L +  G    +  + +     +G   W+   L  Q + + +              +
Sbjct: 473 VEYRLFDREGHEHWIWESGSAVCDEQGVPRWIDGVLIDQTETKRRNAEYEGKVTAISKAM 532

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
              +  F  DG I   N    +L+  +   +    H    A  C+     SD +    A 
Sbjct: 533 --ALVEFDLDGNILEINDNALALFGYDREEVVGHHH----AMFCAPELVASDAYREVWAE 586

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEK 558
           + +        +   +   +  ++ S  P+ +        +    ++T     E  L   
Sbjct: 587 LRAGQFRTGEYRRLAKGGREVWIQASYNPILDTDGKPFKVVKLATDLTPRRVMELDLRAA 646

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +    A   ++SF+ ++S+E+R+P+  IIGFTDLL  +    L+  Q +++  +  SS 
Sbjct: 647 RDRAEAAAAARSSFLANMSHEIRTPMNAIIGFTDLLLET---PLSPDQRRHLSTVQHSSR 703

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+NDILD A +D G ++L      L +L  +V  +         +++ +     +G
Sbjct: 704 SLLGLLNDILDTAKLDRGAIELEQLDFSLRELCEQVVATQRLTAESKGLQLHLDYPSTVG 763

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            F   D  RL Q+ + +L NA+ F+ +G  V LK + + G    +VK+ G  I  D  + 
Sbjct: 764 DFFSGDPLRLQQVLTNLLGNAVKFTQQGE-VRLKVSGEPGAMRLAVKDTGIGIAADRLEK 822

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F        RR  G GLG +I    + L GG + + S++   +  +  +P +
Sbjct: 823 IFEPFAQADASMSRRFGGTGLGTTISRQLVELMGGRLKVESTEGQGSCFSVELPLR 878


>gi|255007676|ref|ZP_05279802.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313145371|ref|ZP_07807564.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134138|gb|EFR51498.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 919

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 120/654 (18%), Positives = 251/654 (38%), Gaps = 47/654 (7%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
            + SL  I S   E            S  + LF  +      +   RD  G      I+ 
Sbjct: 283 WLSSLANIISICIELRKAKDDAIRERSFLRNLFRFMPMGYVRMSIIRDAGGKPCDYRIAD 342

Query: 223 KKN--TETEGIVFQKAIGE-SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK- 278
             +  +E  G+     +G    +L+ +           +E N  +        + +S   
Sbjct: 343 ANDLSSELIGLPLSDYVGRLGSELYADTKAPIDYLVDVIEDNVHKETDVFFDRSQRSSHC 402

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRS 334
           I+          + +D ++ +  +  L  + +    I  N+   + ++D++ YL   N  
Sbjct: 403 IIYSPEKDEVVSLFLDSTETVRAHRALDRSEKLFKSIFANIPAGVELYDKDGYLLDLNNW 462

Query: 335 FVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            +E +        I ++F        E+ E +R+ + +  +LN+    E     + S   
Sbjct: 463 DMETFGVKDKADVIGVSFFENPNVPLEIRERVRNEDLVDFRLNYS--FERAGDYFHSDRQ 520

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
                +    +        N   G + +  + T ++D   +            D+   G 
Sbjct: 521 KMIELYTKVSKLFDSQGNFN---GYVLINIDNTERIDAINRIRDFENFFLLISDYAKVGY 577

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW--DLFAAIIT 505
           A         L+   +      +         + ++     + + E      D +  ++ 
Sbjct: 578 AKLN-----LLTKRGYAIKQWYKNMGEPEDIPLSSVVGVYDKMHPEDRQKVVDFYEKVLK 632

Query: 506 SFDDERKSLQGTLELLS---DSVLEYSIIPLP------NAQTMLTFVNVTDSVRAERALT 556
             + + +S    L+  +    + +  +++           + +    ++T+    E  L 
Sbjct: 633 GEEKDFRSEMRVLKPGTADEWNWVRMNVVVTKFEPDNGEIEIIGINYDITELKETEAMLI 692

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y++ +  +
Sbjct: 693 EAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTEDL---EERREYIKIVQEN 749

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           + +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +  + +       
Sbjct: 750 NDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDPHPS 808

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             S V+DR RL Q+ S  ++NA+ F+S GS + +          F V++ G  IP     
Sbjct: 809 ECSVVSDRNRLHQVISNFVNNALKFTSSGS-IRVGYEEKEECVEFYVRDTGIGIPAGQLP 867

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F RFV         G GLGLSI +S +   GG + + S +   +     IP 
Sbjct: 868 HIFERFVKLNTFIH--GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIPK 919


>gi|295705734|ref|YP_003598809.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294803393|gb|ADF40459.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 995

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 94/394 (23%), Positives = 177/394 (44%), Gaps = 27/394 (6%)

Query: 412 TIWMFENLT---------VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
            +    ++T         +Q + E K       Q   ID L  G+AV   + +I+L N  
Sbjct: 107 VVGTCVDITNKKIMEEEILQKEQEQKLMNSYAFQRSLIDWLDSGIAVTDCNKKIRLLNRK 166

Query: 463 FRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           F  L++ + E     G H  ++     +  N+         I     ++R      +++ 
Sbjct: 167 FYELFQLKGEIDCHIGMHASDLHYLFDKEINK---------IKLENTEKRTKTTKEIKIN 217

Query: 522 SDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +   L Y+  PL         +  F ++T+  + ER + +  E   K +  K+SF+  +S
Sbjct: 218 TGMTLRYNCFPLNEKNNFVGYLWEFEDITEQKKMERVIVQAKEEAEKVNMAKSSFLSKMS 277

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  I+GF  LL+  +  SLN +Q  +V+ I +  + LL+L+NDILD++ ++ G 
Sbjct: 278 HELRTPLNGILGFAQLLEMDE--SLNEQQHDFVQEILSGGSHLLSLINDILDVSRIETGN 335

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILS 696
           +K++   + L  ++ E    +     + NI I    D  +    +AD  RL QI   +L 
Sbjct: 336 LKISVEEVHLLTVIKECINIVQPLAKKKNISIYSQLDQWEDMMVLADPIRLKQILLNLLD 395

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA+ ++ +   VI+            + + G     +    VF  F    +  +  G G+
Sbjct: 396 NAIKYNQENGKVIVFCRLQENKQYIHIVDTGVGFSVEEYTKVFVPFYRIEN-TKEEGTGI 454

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLS+V+  ++L GG ++++S+    +     +P 
Sbjct: 455 GLSLVKQLVHLMGGDINVTSNKGTGSEFCFSLPL 488



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 33/160 (20%)

Query: 288 EAGIAIDVS-----KEITVNDQLTH--------TYEILHNLTVAIAIFDQNRYLQFHNRS 334
             G  +D++     +E  +  +              ++  L   IA+ D N+ ++  NR 
Sbjct: 107 VVGTCVDITNKKIMEEEILQKEQEQKLMNSYAFQRSLIDWLDSGIAVTDCNKKIRLLNRK 166

Query: 335 FVELWEIDLAF---LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           F EL+++       +  + S+   L             + +  K  + +  K ++T K+ 
Sbjct: 167 FYELFQLKGEIDCHIGMHASDLHYL------------FDKEINKIKLENTEKRTKTTKEI 214

Query: 392 WHLPNGQTLHVIVTSNPR----GGTIWMFENLTVQVDLET 427
             +  G TL              G +W FE++T Q  +E 
Sbjct: 215 -KINTGMTLRYNCFPLNEKNNFVGYLWEFEDITEQKKMER 253


>gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
 gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
          Length = 1013

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 105/527 (19%), Positives = 188/527 (35%), Gaps = 30/527 (5%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
             + +  + GE  +      +                  V +A    + Y    N+   E
Sbjct: 203 HALAMKTTEGELAVERLAIAKRLAEHNEAQFRATFEYAAVGVAHIGFDGYWLRTNKKICE 262

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PN 396
           + +          S  EL     +    PE           F   +  E   +  ++  N
Sbjct: 263 MLDY---------SEQELQRLTFADVTCPEDKEIDDRHLQDFLNGEIEEACFEKRYVNRN 313

Query: 397 GQTLHVIVTSN---PRGGTIWMFENLTVQVDLETKY---NTLVKVQGETIDHLSEGVAVF 450
           G+ +   +T +        I + E++  +          N  +           + V + 
Sbjct: 314 GEIIWARLTISVIRDDAYFIVVIEDIREERQAREDLEKSNREIHKLSLVAAKARQSVIIA 373

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              GRI+  N AF  L       +                  +          + S +  
Sbjct: 374 DKFGRIEWVNDAFTQLTGYALPEIIGQKP----GTLLQGPETDPSTAAYIGERLRSRERV 429

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKA 565
              +    +      +   I P+ + Q      + T  NVT   + E  L    E    A
Sbjct: 430 SVEIVNYSKSSEKYWIALEIEPVFDEQHRLIQFIATQTNVTHRKKHEAELRRAKETAEAA 489

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ F+ ++S+E+R+PL  ++GFTDLL          K+ +Y++ I  S   LL+++N
Sbjct: 490 NAAKSEFLANMSHEIRTPLNGLLGFTDLLLRGAAND-PQKRDEYLQIIRTSGRNLLDVIN 548

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADR 684
           D+LDL+ ++AG ++          ++ EV   +  K  E  +R+     G+     V D 
Sbjct: 549 DLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADEKALRLTCDWSGEVPPQIVTDS 608

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            RL Q+ + ++ NA+ F+  GS  +            F +++ G  IPE+    +F+ F 
Sbjct: 609 VRLRQLLTNLIGNAIKFTQFGSVSIDAGWHAPLQQLTFVIRDTGIGIPEEKLDLIFDPFT 668

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  RR  G GLGL+I      L GG VS+ S     +T    I
Sbjct: 669 QADATTTRRFGGTGLGLAICRRIARLLGGDVSVESEIGAGSTFTVTI 715


>gi|326424323|ref|NP_762902.2| CheY-like receiver [Vibrio vulnificus CMCP6]
 gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 1328

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 165/393 (41%), Gaps = 29/393 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N+ +Q   E K     ++  E ++     +      G+    N  F  L     +
Sbjct: 450 IQLSQNVELQRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMH 509

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-------V 525
            +   T I          +++ D    F  +      E+ S    L LL          V
Sbjct: 510 EIVGRTPIE--------VFSQQDASHHFTQVHQELSQEQCSKNYELSLLDSQGGCRDMLV 561

Query: 526 LEYSIIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            E S        +  +   +++T+  + E  L +  +        K  F+ ++S+E+R+P
Sbjct: 562 CEASFNNSQGRVSGIVGILLDLTERKQMESELRDAKDTADAMSRAKGDFLANMSHEIRTP 621

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   L   ++   L+  Q +Y+  I+ S+  LL ++NDILD + ++AG + +   
Sbjct: 622 MNAILGMAHLALNTE---LDPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESI 678

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
              L+++   +   I+ K  E  I   +  D ++    V D  RL Q+   +  NA+ F+
Sbjct: 679 DFSLDEVFENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFT 738

Query: 703 SKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
            KG  +++       + D+    FSVK+ G  I ++    +FN F        R   G G
Sbjct: 739 EKGE-ILVSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTG 797

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSI +  + L GG +S+SS+    +T    I
Sbjct: 798 LGLSISKQLVELMGGQLSVSSAVGMGSTFTFTI 830



 Score = 37.6 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVF-KVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           LS+    S+  E   K ++     S   + + ++    ++     G  L  N  + + T 
Sbjct: 446 LSVSIQLSQNVELQRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELT- 504

Query: 228 TEGIVFQKAIGE-SRKLFKEEIKKRMISSSALE-------KNFCETVSTLEHGNNKSYKI 279
             G+   + +G    ++F ++      +    E       KN+  ++   + G       
Sbjct: 505 --GLAMHEIVGRTPIEVFSQQDASHHFTQVHQELSQEQCSKNYELSLLDSQGGCRDMLVC 562

Query: 280 VRVLNS-----FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               N+      G  GI +D+++   +  +L    +    ++ A
Sbjct: 563 EASFNNSQGRVSGIVGILLDLTERKQMESELRDAKDTADAMSRA 606


>gi|218437127|ref|YP_002375456.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218169855|gb|ACK68588.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1927

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 112/654 (17%), Positives = 247/654 (37%), Gaps = 52/654 (7%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            + G   ++ +     ++L     V + +FD +  ++   D  G+I   N + +K      
Sbjct: 1028 MVGSRRDITDAKQAAEELKRQKEVLQTIFDHIPVMIILFDPTGEIQLVNRALEKTLGWSL 1087

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVLNSFGE 288
               Q+           + +++ I+         +   T        ++      L+   +
Sbjct: 1088 EEIQQTDFLVECYPDLQYRQKAINHILYGNGQWQDFKTRVRDGRIIETTWANVELSDETK 1147

Query: 289  AGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFD----QNRYLQFHNRSFVELWEID 342
             GI  D++        L  T + L  +      A++      N    F  +    +    
Sbjct: 1148 IGIGQDITIRKRAEAALQETQDRLEFILNNSGAALYTCKATPNLATTFITQGVETMTGYI 1207

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQTLH 401
                   PS    L+ L          + K+    +  ++++   T++  +   +G  + 
Sbjct: 1208 PEEFIYVPSF--WLDHLH-------PDDQKSILTEVTQLFENGFHTYEYRFQRSDGNYIW 1258

Query: 402  VI--------VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF--- 450
            V            NP     + F ++T +  +E +     +   E    +   V  F   
Sbjct: 1259 VQDRMQVIQDTQGNPIECIGYWF-DITHRKRMEEEIRNSEQKLREITSLVPGMVFQFGIT 1317

Query: 451  -GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
                     ++ A  ++++    ++              +     +  ++    +T F  
Sbjct: 1318 SDEKYFFSFASDAVLTIYELTPEQVKEDAQCILALIKPEQLALFQEALEVSRQNLTDFYF 1377

Query: 510  ERKSLQGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEKNEALRKA 565
            E    Q T     +  +  S +P  LP+   +     +++T   + E  L +  E    A
Sbjct: 1378 E---HQITTPSGKEKWVRVSSVPQKLPDQTVIWNGVTIDLTVEKQREAELKQAKEVADLA 1434

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            +  K+ F+ ++S+E+R+P+  I+GF DLL        +++   Y+  I+++   LL L+N
Sbjct: 1435 NRAKSEFLANMSHEIRTPMNAILGFCDLLNHLV---TDNRGQFYLSAIASAGKTLLALIN 1491

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
            DILDL+ ++AG ++L Y  + L  L+ E+ Q  + K  E  I++ +  D  + +  + D 
Sbjct: 1492 DILDLSKIEAGKLQLYYEPVNLPTLIQEIYQIFSQKAEEKQIKLLMEIDSSVPTGIIFDE 1551

Query: 685  QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-------FIFSVKNNGSSIPEDMCK 736
             RL QI   ++ NA+ F+ +G   + L +                ++++ G  I  +   
Sbjct: 1552 VRLRQILFNVVGNALKFTEEGYVKISLNSYHSETQDQEDSITLKITIEDTGIGIAPEQQT 1611

Query: 737  SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F+ F+ +   +  +  G GLGL+I +    + GG + + S     +  +   
Sbjct: 1612 QIFDAFIQSDGQNNRKYGGTGLGLAITKRLTTILGGKIELYSQPNQGSIFSFTF 1665



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 121/437 (27%), Gaps = 67/437 (15%)

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANISYKKNTETEGIVFQKAIG 238
            E     + L      F+ L +++  + + +D      ++ + ++ +          +   
Sbjct: 748  ERQQAEQNLRESEEKFRQLAENIKEIFYIQDAQTFQTIYVSPTFSEIWGISWDTLYQNPH 807

Query: 239  ESRKLFKEEIKKRMISSSALEKNFCE----TVSTLEHGNNKSYKIVRVLNSFGE------ 288
               +      +  + ++    +N  E           G  +                   
Sbjct: 808  LWMENIYPPDRAIVRANLQANRNEQEFNYEYRIIRPDGQLRWIWARNFPVKDSSGNIYRI 867

Query: 289  AGIAIDVSKEITVNDQLTHTYEILHNLTV---------------------------AIAI 321
            AGIA D+++     + L    + L NL                              +AI
Sbjct: 868  AGIAEDITERKQTQEALKTLNQNLENLVEERTVQLQQIIEQHQQTEEALRKSEERWQLAI 927

Query: 322  FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
            +  N  L   N    EL+            + E+   LR  +      + +     +   
Sbjct: 928  YGTNDGLWDWNPQNNELFLSSRWKEMLGYEDHEISSHLREWSSRVHPDDLQEVLRQVMDH 987

Query: 382  YKSSETHKDTWHL---PNGQTLHVIVTSNPRGGTIW-----------MFENLTVQVDLET 427
                  + ++ +     +G        +  RG  +W              ++T       
Sbjct: 988  LARKTDYYESEYRVRCKDGTYKW----TLDRGKAVWDETGKPIRMVGSRRDITDAKQAAE 1043

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            +     +V     DH+   + +F P G I+L N A                 +  I  T 
Sbjct: 1044 ELKRQKEVLQTIFDHIPVMIILFDPTGEIQLVNRALEKTLGW---------SLEEIQQTD 1094

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNV 545
                   D      AI        +       +    ++E  ++ + L +   +    ++
Sbjct: 1095 FLVECYPDLQYRQKAINHILYGNGQWQDFKTRVRDGRIIETTWANVELSDETKIGIGQDI 1154

Query: 546  TDSVRAERALTEKNEAL 562
            T   RAE AL E  + L
Sbjct: 1155 TIRKRAEAALQETQDRL 1171



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 98/320 (30%), Gaps = 39/320 (12%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEGIVFQKAIGESR 241
           L     +F+ + D    ++W         + N  +          E      +    E  
Sbjct: 182 LQESEQLFQTMADQAPVMIWISGTDTLCYYFNQVWLDYSGRTLEQEMGNGWAENVHPEDF 241

Query: 242 KLFKEEIKKRMISSSALEKNFCET------VSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
           +   +   K      + +  +            L+HG  +           G  G  +D+
Sbjct: 242 QYCLDTYLKAFEKRESFQMEYRLRRWDEEYRWLLDHGTPRF---SSEGEFLGYIGSCVDI 298

Query: 296 SKEITVNDQLTHTYEILHN----LTVAIAIFDQN----RYLQFHNRSFVELWEIDLAFLA 347
           S       +L  T + L      L +A+ + D          F N++   L+ I      
Sbjct: 299 SDRKETEKKLQQTRKFLQTVLDYLPIAVFVRDGQKDHFGQYLFWNKTCEHLFGISAEEAL 358

Query: 348 TNPSND----ELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
               ++    E+ +F R     L E  N +     I    K  +    T  LP      +
Sbjct: 359 GKTRDELFPQEIPDFFRQKDRILFENNNIENIPAEIVESQKLGQRILHTVKLP------L 412

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNP 461
              ++     +   E++T ++  ET+   L ++   +++     + VF     + +  NP
Sbjct: 413 YDETHQPKYILGFSEDITDRIKAETERTYLGQLLEASLNE----IYVFNAQTLKFQYVNP 468

Query: 462 AFRSLWKTEENRLSPGTHIR 481
           +          ++   T + 
Sbjct: 469 SALENLGYSWEQMQQMTPLD 488



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 112/344 (32%), Gaps = 65/344 (18%)

Query: 273  NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ--LTHTYEILHNLTVAIA----IFDQNR 326
            + K+    + L    +   A  V++      +  L  + E    L   I     I D   
Sbjct: 722  DTKALDDHKFLTEILQIFAARAVTELERQQAEQNLRESEEKFRQLAENIKEIFYIQDAQT 781

Query: 327  -YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI-FSVYKS 384
                + + +F E+W I    L  NP        L   N  P   +    + N+  +  + 
Sbjct: 782  FQTIYVSPTFSEIWGISWDTLYQNP-------HLWMENIYP--PDRAIVRANLQANRNEQ 832

Query: 385  SETHKDTWHLPNGQTLHVIVTSNP---RGGTIW----MFENLTVQVDLETKYNTLVKVQG 437
               ++     P+GQ   +   + P     G I+    + E++T +   +    TL +   
Sbjct: 833  EFNYEYRIIRPDGQLRWIWARNFPVKDSSGNIYRIAGIAEDITERKQTQEALKTLNQNLE 892

Query: 438  ETID----HLSEGV-------------------AVFGPDGRIKLSNPAFRSLWKTEENRL 474
              ++     L + +                   A++G +  +   NP    L+ +   + 
Sbjct: 893  NLVEERTVQLQQIIEQHQQTEEALRKSEERWQLAIYGTNDGLWDWNPQNNELFLSSRWKE 952

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD------------ERKSLQGTLELLS 522
              G     I++    + +     DL   +    D               +   GT +   
Sbjct: 953  MLGYEDHEISSHLREWSSRVHPDDLQEVLRQVMDHLARKTDYYESEYRVRCKDGTYKWTL 1012

Query: 523  DS---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            D    V + +  P+   + + +  ++TD+ +A   L  + E L+
Sbjct: 1013 DRGKAVWDETGKPI---RMVGSRRDITDAKQAAEELKRQKEVLQ 1053



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 86/282 (30%), Gaps = 33/282 (11%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + +       +     V I I   +    + N+ +++          +  + ++ +  
Sbjct: 180 AVLQESEQLFQTMADQAPVMIWISGTDTLCYYFNQVWLDY---------SGRTLEQEMGN 230

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPRG------ 410
             + N  PE   +    +     ++  E+ +  + L   + +   ++    PR       
Sbjct: 231 GWAENVHPEDFQYCL--DTYLKAFEKRESFQMEYRLRRWDEEYRWLLDHGTPRFSSEGEF 288

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD----GRIKLSNPAFRS 465
            G I    +++ + + E K     K     +D+L   V V        G+    N     
Sbjct: 289 LGYIGSCVDISDRKETEKKLQQTRKFLQTVLDYLPIAVFVRDGQKDHFGQYLFWNKTCEH 348

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+          T           ++ + D        I +   E    Q     L   +
Sbjct: 349 LFGISAEEALGKTRDELFPQEIPDFFRQKDRILFENNNIENIPAEIVESQK----LGQRI 404

Query: 526 LEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
           L    +PL +        +    ++TD ++AE   T   + L
Sbjct: 405 LHTVKLPLYDETHQPKYILGFSEDITDRIKAETERTYLGQLL 446


>gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 587

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 160/393 (40%), Gaps = 25/393 (6%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIK 457
               +     G +    N+  + +L+    T    Q      I+++  G+ +    G I 
Sbjct: 207 RTYESREDETGMLSQSLNILAR-NLQEMVRTQEMQQDRLRALIENIGSGLILIDQRGYIS 265

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L N A++ +++ + +                 YY      ++ A +   F  E    +  
Sbjct: 266 LMNRAYKEMFRIDPSDYVH-----------RLYYEAFPYKEVIALVEEIFMTEVNVRKQM 314

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L  +      + +   P   T        D  +    +      L+K ++++  FV +VS
Sbjct: 315 LLPVDIERKHFEVYGTPIIGT-------NDEWKGIIVVFHDITELKKLEQMRKDFVANVS 367

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++P+T+I GF + L    +    +    ++  I   S  L +L+ D+LDL+ ++   
Sbjct: 368 HELKTPITSIKGFAETLLDGAMHDAQT-LEYFLTIILKESERLQHLIQDLLDLSKIEQQG 426

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             LN S + L+++L EV   +  K ++  I ++  S+  +     D  RL QIF  +++N
Sbjct: 427 FTLNISVVDLHEVLKEVIVMLEAKANDKQITLEYTSNAPVCYMYGDLHRLKQIFINLINN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ ++  G  V +   +D  +    V + G  I +     +F RF            G G
Sbjct: 487 AIAYTPAGGRVTVYVEKDEKELHVHVSDTGIGIEQKEIPRIFERFYRVDKARSRNSGGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+IV+  +  H G +S+ S     TT     
Sbjct: 547 LGLAIVKHLVEAHHGTISVKSEVGIGTTFTVHF 579



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 23/146 (15%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A ++ + +   + Q      ++ N+   + + DQ  Y+   NR++ E++ ID +     
Sbjct: 226 LARNLQEMVRTQEMQQDRLRALIENIGSGLILIDQRGYISLMNRAYKEMFRIDPS----- 280

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNP 408
                  +++       E   +K     +  ++ +    +    LP + +  H  V   P
Sbjct: 281 -------DYVH--RLYYEAFPYKEVIALVEEIFMTEVNVRKQMLLPVDIERKHFEVYGTP 331

Query: 409 RGGT-------IWMFENLTVQVDLET 427
             GT       I +F ++T    LE 
Sbjct: 332 IIGTNDEWKGIIVVFHDITELKKLEQ 357


>gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 597

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 91/418 (21%), Positives = 173/418 (41%), Gaps = 27/418 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  +            +      I+T++  GG    F  +  ++       N   + 
Sbjct: 199 RITAPLRKMRQAAFEMARGHFDMKVPILTNDEIGGLAMAFNQMGRRLQFNINALNQEKEQ 258

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  DG I ++NP        +      G     +A           
Sbjct: 259 LASILSSMADGVITFNRDGEILITNPPAERF--LQAWYFEQGNDAEAMAPL------PPQ 310

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +LFA ++   +++ +S + TL+  +  +L   + PL     +   V V   +  ER L
Sbjct: 311 VKELFARVVR--EEKEQSTEVTLQGRTWVIL---MTPLYGKTMVRGAVAVLRDMTEERRL 365

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+++  F+ +VS+ELR+P+  + G+++ +      S   ++ +  + I  
Sbjct: 366 ----------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAAS-EEEKKEMAKVIYD 414

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  LVND+LDLA ++AG ++L Y  + L   +  V +       E  I +      
Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  R+ Q+ + ++ NA+  +  G TV L            V+++GS IPE+  
Sbjct: 475 RDIEIAFDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDL 534

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             VF RF        R   G GLGL+I ++ +  H G +++ S     TT +  +P++
Sbjct: 535 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592


>gi|149277501|ref|ZP_01883642.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
 gi|149231734|gb|EDM37112.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
          Length = 903

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 122/653 (18%), Positives = 249/653 (38%), Gaps = 64/653 (9%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           I++   +  +  E  ++  +          +      +    D  G +L+AN + +   E
Sbjct: 138 IITHISLRKKAHELEVRNHR----FEDLLNISKVSPEMHCILDDRGVLLFANNAIQHVLE 193

Query: 228 TEGIVFQKAIGESR------KLFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIV 280
                 ++A+G+S       +  +   +      S   K+F      +   GN +     
Sbjct: 194 YN---PEEAVGQSAWGYCWKEDLERVSQTISSGLSKGVKDFKIDFRVVTKSGNMRWLSWS 250

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
            V  +        D+++   V ++L     +   +   + I D N ++ + N +F ++  
Sbjct: 251 MVCKNRRWYAYGRDITENKRVENELMKLSLVASKVNNGVVINDANNHVTWVNDAFEKITG 310

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
             L  L            L      PE       K    +  K S T     +  + Q +
Sbjct: 311 FTLEDLKGR--------RLGDLITGPETKLELIDKARALTQKKQSFTVDLLAYRKDKQPI 362

Query: 401 HVIVTSNPRGGTIWMFEN-------------LTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            + + +        +F +             +T +   E +   L  V  +T       V
Sbjct: 363 WLSIYN------TVIFNDEGMVDIEVEIIIDITEKKKAEEELQLLSLVASKT----DTSV 412

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            +   +G    +N +   L     N L  G  + ++ +    +    +   + A    S+
Sbjct: 413 NITDGEGNTTWTNASLEKLTGYSLNELQ-GFKLGDVLSREEGHIELIEESRIRARNNESY 471

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
             E   +Q   +      +  S  P+ N      + +    ++T   +AE+ L E  E  
Sbjct: 472 SIE---VQARTKQGDPLWISVSTTPIVNENGRVERQIDLITDITHRKQAEKELIEAKEHA 528

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +  E K  F+  +S+E+R+PL  +IG   LL  +        Q   +  +  S+  LLN
Sbjct: 529 LQLSEAKEMFLSVMSHEIRTPLNTVIGVAHLLLDN---DPLPGQMDDLNMLKFSAENLLN 585

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           ++NDILDL  ++ G ++L      +  L  ++  S+   +      +++  D ++  F+ 
Sbjct: 586 IINDILDLTKMETGHLQLETIPFNIQSLTRDIVSSLHINVSSKGNILELDFDDRIPKFIK 645

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKS 737
            D+ RL Q+   +L NA+ F+ +G+  +I++   +N +     F VK++G  IP++    
Sbjct: 646 GDKIRLYQVLMNLLGNAIKFTDQGNILLIIRLLEENDEQVILYFEVKDSGIGIPKEKLSL 705

Query: 738 VFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F+ F+           G GLGL+I +  + L G  +S+ SS    T+ +  I
Sbjct: 706 IFDPFMQATTDTSRHYGGTGLGLTITQKMLQLLGAEISVQSSVGVGTSFSFSI 758


>gi|116251585|ref|YP_767423.1| two component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256233|emb|CAK07314.1| putative two component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 564

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 99/511 (19%), Positives = 192/511 (37%), Gaps = 40/511 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                IL +L   I + D    +   N   +++  +    +    + D           L
Sbjct: 57  HSFESILESLPQGIVLLDPAGTVTAFNSRTLDILGLPQGAIRKGMNIDG----------L 106

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
           P   + +           +  +    + L +G  + +    +  GG I  +E+++  + +
Sbjct: 107 PGTADCRAVASRRAMTGGAPTSQ---FALSDGGMVSLTCAPSRDGGWILSYEDISTLIRV 163

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E       +     + ++  G+ +F     + L N ++  ++   +    PGT + +I A
Sbjct: 164 EDSLTEQHRRFDAALSNMPHGLCMFDSTKNLILCNASYARMYNLPDLLTQPGTPLVDILA 223

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
             SR  N       +  ++             + L    V++ +  P+ N   + T  +V
Sbjct: 224 YRSREGNGPADTTTYFDVVFEATVRGAPASQNIVLADGRVIKITHNPMQNGGYVATHEDV 283

Query: 546 T-------------------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           T                         +  R  R L       R  +E++  FV   S+E 
Sbjct: 284 TKTVRLAEDLRRHHDQLEATVKSRTAEVERQARELERMLAQERNINELQRQFVAMASHEF 343

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I      L   +        S  V+ I AS T +++L+  IL    +D G + +
Sbjct: 344 RTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIRASVTRIVDLMESILSAGRLDTGKIDI 403

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           NY    L  L+    +  +T     +    +  DG   S  AD + L Q+F+ +LSNA+ 
Sbjct: 404 NYDACALRSLIKTCCERQSTIA--KSHSFVLDIDGLPESIDADPRTLAQVFTNLLSNAVK 461

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           ++   S V + A  + G+   S+ ++G  I  +    +F R+          G G+GL++
Sbjct: 462 YAPGTSEVRVTAWAETGNVKVSISDDGVGIDAEDVPRLFQRYFRARTSTGIAGTGIGLNL 521

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           V+  I LH G + + S+    +T    +P K
Sbjct: 522 VKQIIELHNGSIEVRSARGCGSTFTVTLPIK 552



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 93/341 (27%), Gaps = 24/341 (7%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
             F+ + +SL   +   D AG +   N              +K  G +          R 
Sbjct: 57  HSFESILESLPQGIVLLDPAGTVTAFNSRTLDILGLPQGAIRK--GMNIDGLPGTADCRA 114

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHT 308
           ++S         T                     G      D+S     E ++ +Q    
Sbjct: 115 VASRRAMTGGAPTSQFALSDGGMVSLTCAPSRDGGWILSYEDISTLIRVEDSLTEQHRRF 174

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
              L N+   + +FD  + L   N S+  ++ +            ++L +       P  
Sbjct: 175 DAALSNMPHGLCMFDSTKNLILCNASYARMYNLPDLLTQPGTPLVDILAYRSREGNGP-- 232

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            +  T+ + +F              L +G+ + +       GG +   E++T  V L   
Sbjct: 233 ADTTTYFDVVFEATVRGAPASQNIVLADGRVIKITHNPMQNGGYVATHEDVTKTVRLAED 292

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                     T+              R        R L    E  L+   +I  +     
Sbjct: 293 LRRHHDQLEATVKS------------RTAEVERQAREL----ERMLAQERNINELQRQFV 336

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              +      L      +    RK      E LSD V +  
Sbjct: 337 AMASHEFRTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIR 377


>gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 726

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 103/375 (27%), Positives = 175/375 (46%), Gaps = 23/375 (6%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-------RSLWKTEENRLSPG 477
            E +       +   +D L E V +  P+  I+ +N A        ++  K  E      
Sbjct: 361 AEQELKAREYEKKFILDSLEEMVVLRDPNFNIRWANRAALNNKDLLKAEDKAPEADSPEA 420

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               NI         +    +L ++       E K+     + + D +     +      
Sbjct: 421 QDRYNIPKPLYPLAPDYAAHELTSS-------EGKTWLLRSKPVCDKIGNTIAV------ 467

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T V +T+    E  L    +    A+  K++F+ ++S+ELR+PL +IIGF+DLL   
Sbjct: 468 -LETGVEITERKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEK 526

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G LN KQ++ V  IS S   LLNL+N+ILDL+ V+AG  +L+YST  L ++  EV+  
Sbjct: 527 VYGELNLKQTKAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDM 586

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I        ++I++  D  L    AD++R+LQ+ S +++NA+ FS++   V +KA + +G
Sbjct: 587 IFPFATSKGLKIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVKAVQMDG 646

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +V ++G  I     + +F  F         + +G GLGL++V+  + LHGG V   
Sbjct: 647 FLKITVADDGIGIAAADHEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFE 706

Query: 776 SSDEGVTTINCRIPS 790
           S     +     IP 
Sbjct: 707 SEVGKGSVFGFSIPL 721


>gi|307153865|ref|YP_003889249.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306984093|gb|ADN15974.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1153

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 113/685 (16%), Positives = 251/685 (36%), Gaps = 76/685 (11%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANISYKKNTET-EGIVF 233
             E+       + L +    F+ L +++  + +  D     +++ + +++K     +  V+
Sbjct: 465  REITHRKKAEEILQDREEQFRQLAENIRDVFFIHDSHSYQLIYISPAFEKIWGIKQEKVY 524

Query: 234  QKAIGESRKLFKEE---IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--NSFGE 288
            + ++     ++ E+   +  ++    A +    E      +   +  ++      N+ GE
Sbjct: 525  EDSLIWMNSIYPEDREKVINKVKQEQANQPTQLEYRIVKPNQEIRWIRVRSFPVFNNLGE 584

Query: 289  A----GIAIDVSKEIT----VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
                 GIA D+++       + +       +++NL   + +   +  +   N   VEL  
Sbjct: 585  VYRIVGIAEDITERKQADQLIYESEQRYRNLINNLHAGVIVHGSDSQILLCNSKAVELLG 644

Query: 341  IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
            I+   L    + D +  FL+    L    ++      + +  KS   +       N +TL
Sbjct: 645  IERECLLEKTALDPVWHFLKEDGSLMSLKDYPV--NQVIATKKSLTNYVVGVIRKNSKTL 702

Query: 401  -HVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVK------------------ 434
               +V + P           +  F ++T + + E K   + +                  
Sbjct: 703  IWGLVNAFPELDIEGNLTQIVVTFFDITERQETELKLQKMNEELELKIEERTYHLHQANQ 762

Query: 435  ---------------------VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
                                      ID++   + V   D R+ L+N      +    ++
Sbjct: 763  QLRLEIFEREQAELALEENKAFLRNVIDNVPSMIFVKDADSRVILANNFLAKFYNKSIDQ 822

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            +    HI  +     +     +   +F ++ T    E+     TL        + S  PL
Sbjct: 823  IEGQQHIEFVPDLADQKKFLQEDQQVFKSLETLLIPEQTI---TLPSGEVRYFQTSKTPL 879

Query: 534  PNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             +        +    ++T+    E+ L       ++  ++K  F+  +S+E R+PLT I+
Sbjct: 880  ISIDGKVKYLLGVATDITERKNFEQQLEIALAQEKELHKLKIQFIDLISHEFRTPLTAIL 939

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            G  + ++         K+ +++  I  +   L  LV+D+L ++  ++G ++ N + +   
Sbjct: 940  GSAEFVERHGEQLKAEKKEKHLRNILLAGRRLNELVDDVLSISRAESGKLEFNPTPLDFV 999

Query: 649  DLLNEVKQSIA-TKMHENNIRIK---VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            +    + + I       ++I +     + +        D + L  I   +LSNA  +S+ 
Sbjct: 1000 EFCQNLIEEIQFGFAKNHHIELLLKGFVPEKDCNICYLDEKCLRHILINLLSNATKYSAV 1059

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
             S + L         IF + + G  IP +    +F  F    +     G GLGL IV+++
Sbjct: 1060 DSLIQLSLDCQEQQIIFQISDQGIGIPLEDQSLLFEPFYRANNVHTIPGTGLGLKIVQTY 1119

Query: 765  INLHGGHVSISSSDEGVTTINCRIP 789
            + LH G V   S +   TT    +P
Sbjct: 1120 VTLHKGKVEFISEEGEGTTFTVTLP 1144



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/468 (13%), Positives = 156/468 (33%), Gaps = 32/468 (6%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVF-KVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           IL +  + +EL     K  K+        +++  ++   V+  D  G   +   + ++  
Sbjct: 337 ILKIFAVRTELELQQQKTAKILQDSENLHRLILTNISDSVFITDDQGFFTFICPNTEQIF 396

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLN 284
             +     K +   + L  +    +   +   +    E V   + G  +     I +V  
Sbjct: 397 GYDYQEI-KFMKNIKNLLGDIFDTQQELTQFEKIINLEKVIINKFGERRVLLINIQQVSI 455

Query: 285 SFGEAGI-AIDVSKEITVNDQLTHTYEILHNLTVAI----AIFDQNR-YLQFHNRSFVEL 338
           + G       +++      + L    E    L   I     I D +   L + + +F ++
Sbjct: 456 AQGTILYTCREITHRKKAEEILQDREEQFRQLAENIRDVFFIHDSHSYQLIYISPAFEKI 515

Query: 339 WEIDLA--FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           W I     +  +    + +  +     K+  ++  +   +     Y+  + +++   +  
Sbjct: 516 WGIKQEKVYEDSLIWMNSI--YPEDREKVINKVKQEQANQPTQLEYRIVKPNQEIRWIRV 573

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            ++  V          + + E++T +   +       +     I++L  GV V G D +I
Sbjct: 574 -RSFPVFNNLGEVYRIVGIAEDITERKQADQLIYESEQRYRNLINNLHAGVIVHGSDSQI 632

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQ 515
            L N     L   E   L   T +  +        +     D     +I +       + 
Sbjct: 633 LLCNSKAVELLGIERECLLEKTALDPVWHFLKEDGSLMSLKDYPVNQVIATKKSLTNYVV 692

Query: 516 GTLELLSDSVLEYSIIPLPN-------AQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           G +   S +++   +   P         Q ++TF ++T+    E  L + NE L    E 
Sbjct: 693 GVIRKNSKTLIWGLVNAFPELDIEGNLTQIVVTFFDITERQETELKLQKMNEELELKIEE 752

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +   +   + +LR          ++ +  +      +   ++  +  +
Sbjct: 753 RTYHLHQANQQLR---------LEIFEREQAELALEENKAFLRNVIDN 791



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 88/266 (33%), Gaps = 34/266 (12%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--NTETEGI 231
            +  E+ E       L  + +  + + D++  +++ +D    ++ AN    K  N   + I
Sbjct: 764  LRLEIFEREQAELALEENKAFLRNVIDNVPSMIFVKDADSRVILANNFLAKFYNKSIDQI 823

Query: 232  VFQKAIGESRKLFKEEIKKRMISSSALEKNF---CETVSTLEHGNNKSYKIVRVLNSF-- 286
              Q+ I     L  ++   +               E   TL  G  + ++  +       
Sbjct: 824  EGQQHIEFVPDLADQKKFLQEDQQVFKSLETLLIPEQTITLPSGEVRYFQTSKTPLISID 883

Query: 287  ----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---- 338
                   G+A D+++      QL           +A+A   +   L+     F++L    
Sbjct: 884  GKVKYLLGVATDITERKNFEQQLE----------IALAQEKELHKLKI---QFIDLISHE 930

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            +   L  +  +    E     R   +L  +   K  +  + +  + +E   D   +   +
Sbjct: 931  FRTPLTAILGSAEFVE-----RHGEQLKAEKKEKHLRNILLAGRRLNELVDDVLSISRAE 985

Query: 399  TLHVIVTSNPRGGTIWMFENLTVQVD 424
            +  +     P    +   +NL  ++ 
Sbjct: 986  SGKLEFNPTPLD-FVEFCQNLIEEIQ 1010


>gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 597

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 91/418 (21%), Positives = 173/418 (41%), Gaps = 27/418 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  +            +      I+T++  GG    F  +  ++       N   + 
Sbjct: 199 RITAPLRKMRQAAFEMARGHFDMKVPILTNDEIGGLAMAFNQMGRRLQFNINALNQEKEQ 258

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  DG I ++NP        +      G     +A           
Sbjct: 259 LASILSSMADGVITFNRDGEILITNPPAERF--LQAWYFEQGNDAEAMAPL------PPQ 310

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +LFA ++   +++ +S + TL+  +  +L   + PL     +   V V   +  ER L
Sbjct: 311 VKELFARVVR--EEKEQSTEVTLQGRTWVIL---MTPLYGKTMVRGAVAVLRDMTEERRL 365

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+++  F+ +VS+ELR+P+  + G+++ +      S   ++ +  + I  
Sbjct: 366 ----------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAAS-EEEKKEMAKVIYD 414

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  LVND+LDLA ++AG ++L Y  + L   +  V +       E  I +      
Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  R+ Q+ + ++ NA+  +  G TV L            V+++GS IPE+  
Sbjct: 475 RDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDL 534

Query: 736 KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             VF RF          R G GLGL+I ++ +  H G +++ S     TT +  +P++
Sbjct: 535 PFVFERFYKADKARTRSRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592



 Score = 37.6 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 81/266 (30%), Gaps = 32/266 (12%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +N +      IL ++   +  F+++  +   N            FL       E     
Sbjct: 251 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAER-------FLQA--WYFEQGNDA 301

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWM 415
            +   LP Q+      + +F+     E  + T     G+T  +++T         G + +
Sbjct: 302 EAMAPLPPQV------KELFARVVREEKEQSTEVTLQGRTWVILMTPLYGKTMVRGAVAV 355

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             ++T +  L+            +  T + +     + + + +A    + + +++   + 
Sbjct: 356 LRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAA-SEEEKKEMAKVIYD 414

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSD 523
              +            R  A      Y +         +I  F    K  Q  L     D
Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSV 549
             +E ++ P    Q +   ++     
Sbjct: 475 RDIEIALDPDRIEQVLTNLIDNAIRH 500


>gi|170734548|ref|YP_001773662.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820586|gb|ACA95167.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 768

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 103/501 (20%), Positives = 200/501 (39%), Gaps = 30/501 (5%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L  L   +   D N  L + N +  EL           P  D L        ++P
Sbjct: 128 QFEAVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAVGRPVRDVLRIVDHEGRRVP 187

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENL 419
                    ++     +++ + +      +G+ + ++  ++P G       G + +  + 
Sbjct: 188 TTP-----LDHALGGAEAT-SDRHWLQAGSGEPVPIVAVASPIGDADGNLDGAVLLLRD- 240

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
                 +       ++Q   ++   + +      GRI   N A + ++  +E        
Sbjct: 241 ---AGADRARVDASRLQHAVVEASPDAIVGIDASGRIASWNAAAQRIFGYDEADARGRRF 297

Query: 480 IRNIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSIIP 532
              IA    R    +D +D     +          D  R     +   +      Y  + 
Sbjct: 298 DTLIARRWLRLNPLADAFDAMQEPVGPLELLCVRRDGRRFRATVSACPVQGDARAYVALS 357

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T         + R+ +   +  +    ++ +K+  +  VS+ELR+PL  I G+ +
Sbjct: 358 LTLRETGAQRRRDLRAQRSLQGARDARDQADTSNRLKDELLATVSHELRTPLNVIYGWIE 417

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+ +   +L   Q Q V+ I  S+  L  +V DILD +++  G ++L+ + + +  L +
Sbjct: 418 VLRNTGDHAL---QHQAVDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFS 474

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   +  T      I ++   D        D +RL Q+ S ++SNA+ F+  G +V +  
Sbjct: 475 DQVGTFQTAASSAGILLEFDCDASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGL 534

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
           ARD G  + +V + G  I  +    VF+ F          RRG+GLGLSIV     LHGG
Sbjct: 535 ARDGGHAVLTVADTGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGG 594

Query: 771 HVSISSSD-EGVTTINCRIPS 790
            V+++S+  +  TT    +P+
Sbjct: 595 SVTVASAGRDRGTTFTVTLPA 615



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 81/275 (29%), Gaps = 21/275 (7%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT-ETEGIVFQKAIGESRKLFKEEIKKRMI 253
           F+ +  +L   V   D  G + + N +  +           + + +  ++   E ++   
Sbjct: 129 FEAVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAVGRPVRDVLRIVDHEGRRVPT 188

Query: 254 SSSAL---EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG--------IAIDVSKEITVN 302
           +                 L+ G+ +   IV V +  G+A         +  D   +    
Sbjct: 189 TPLDHALGGAEATSDRHWLQAGSGEPVPIVAVASPIGDADGNLDGAVLLLRDAGADRARV 248

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           D     + ++     AI   D +  +   N +   ++  D A       +  +       
Sbjct: 249 DASRLQHAVVEASPDAIVGIDASGRIASWNAAAQRIFGYDEADARGRRFDTLIARRWLRL 308

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           N L +  +         ++ +     +      +G+     V++ P  G    +  L++ 
Sbjct: 309 NPLADAFD---------AMQEPVGPLELLCVRRDGRRFRATVSACPVQGDARAYVALSLT 359

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           +               ++    +         R+K
Sbjct: 360 LRETGAQRRRDLRAQRSLQGARDARDQADTSNRLK 394


>gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
          Length = 1342

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 462 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 521

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 522 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 579

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 580 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 639

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 640 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 696

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 697 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 756

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 757 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 816

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 817 LVELMGGQITVHSEEGKGSTFEFS 840



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 472 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 529

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 530 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 589

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 590 ILLDMTERKEMEDELRKAKEAADAMSQA 617


>gi|307822326|ref|ZP_07652558.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307736892|gb|EFO07737.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 1187

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 118/672 (17%), Positives = 254/672 (37%), Gaps = 64/672 (9%)

Query: 166 LRILSLDGIYSELA---ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
            R+ +L+ +   LA           L +  + +++L D+    ++  D  G   + + + 
Sbjct: 150 ARLAALNLMEDALAARTRAETAHAALRDSEAKYRLLADNAADCIFWVDIDGRYKYISPAC 209

Query: 223 KKNTETEGIVFQKAIGESRKL--FKEEI--KKRMISSSALEKNFCETVSTLEHGNNKSY- 277
           ++ +      F         +    + +  ++    S+  ++   E     + G  +   
Sbjct: 210 EQISGHTPEEFLADPELMVNIIHLDDRMAYRQHFEDSTNTDRGELEVRIMHKDGGVRWIG 269

Query: 278 ----KIVRVLNSF-GEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFD-QNRY 327
                I      + G+ G   D++    V  +L  + E       ++  A  + D +   
Sbjct: 270 HHCKPIHDENGEYLGQHGANRDITARKRVEQELHDSSERFRVASESIRDAFILIDGKEGK 329

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLE-FLRSANKLPEQLNWKTWKENIFSVYKSSE 386
           +   N +   ++          P +  +       A  +       T      +V ++ E
Sbjct: 330 IVLWNPAAAVMFGYTKNEAIGLPLHQLIGPPRFHEAAAVGLAHFAHT--GEGAAVGRTLE 387

Query: 387 THKDTWHLPNGQTLHVIVT--SNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETID 441
                    NG+   V ++  +   GG      +  ++T +   E +   L +     ++
Sbjct: 388 LPA---LRRNGEEFSVELSLSAIQLGGQWHAAGIVRDITERKQAEEQLRKLAQ----AVE 440

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
              E + +   DG I+  N AF          +  G + R + +  +   + +  WD  +
Sbjct: 441 QSPESIIITDLDGNIEYVNEAFAKNSGYCHEEI-IGQNPRLLNSGKTPKESYTALWDAIS 499

Query: 502 AIIT---SFDDERK--------SLQGTLELLSDSVLEYSIIP------LPNAQTMLTFVN 544
              T    F ++RK        ++   +   +  +  Y  +           + +    +
Sbjct: 500 NGQTWKGEFINKRKDGSEYVDFAIITPIRQPNGGITHYVAVQEDITEKRHQGEELDQHRH 559

Query: 545 VTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             + + A R   L     +   A++ K++F+ ++S+E+R+P+  IIG T LL+ +   + 
Sbjct: 560 HLEELVASRTAELESARTSADAANQSKSAFLANMSHEIRTPMNAIIGLTYLLRQN---TP 616

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            S+QS  ++ I A++  LL+++NDILDL+ ++AG ++L  +   L  +L+ +   I  + 
Sbjct: 617 TSEQSVRLDKIDAAALHLLSIINDILDLSKIEAGRLELEQTDFSLAAVLDHISSLITDQS 676

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
               + I++ +         D  RL Q       NA+ F+ +G T+ L+A          
Sbjct: 677 RAKGLTIEMDNGDVPLWLRGDPTRLRQAMLNYAGNAVKFTERG-TIWLRARLLKETDAGL 735

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  I  +   ++F  F        R   G GLGL+I     N+ GG V + 
Sbjct: 736 LVRFEVQDTGIGIAAENLPTLFEVFAQADISTTRKYGGTGLGLAITRRLANIMGGEVGVE 795

Query: 776 SSDEGVTTINCR 787
           S+    +T    
Sbjct: 796 SALGQGSTFWFT 807



 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 30/212 (14%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD-------GKDETPEIIG 97
           I  R  + ++++++        + +     L+       ++W+       G  +   I  
Sbjct: 292 ITARKRVEQELHDSSERFRVASESIRDAFILIDGKEGKIVLWNPAAAVMFGYTKNEAIGL 351

Query: 98  QLHQRIDIPQ---TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIK 154
            LHQ I  P+        L+          +  +     LR+ G+ F +        AI+
Sbjct: 352 PLHQLIGPPRFHEAAAVGLAHFAHTGEGAAVGRTLELPALRRNGEEFSVELSLS---AIQ 408

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           + G+   +          GI  ++ E     ++L           +     +   D  G+
Sbjct: 409 LGGQWHAA----------GIVRDITERKQAEEQLRK----LAQAVEQSPESIIITDLDGN 454

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
           I + N ++ KN+   G   ++ IG++ +L   
Sbjct: 455 IEYVNEAFAKNS---GYCHEEIIGQNPRLLNS 483


>gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1582

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 108/652 (16%), Positives = 242/652 (37%), Gaps = 45/652 (6%)

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
                +  +L    +    L++         D  G+ +  N+++ + T  E   F      
Sbjct: 419  RVNTRTLELQERETRLWDLYEHSPVAYASLDIKGNFIKHNLAFAQLTGREREEFSHLKFN 478

Query: 240  SRKLFKEEIKKRMISSSALEKNFCE-TVSTLEHGNNKSYKIVRVLNSFGEAGIA------ 292
                  EE  + ++      +   +  V        K +  + V++   E G        
Sbjct: 479  DVIKHSEEFTQELLDHVLSGEVTSDIRVELFRDDKQKKFASMTVISKLDEQGKLEDIRLS 538

Query: 293  -IDVSKEITVNDQLTHTYEILHNLTVAI--AIFD-------QNRYLQFHNRSFVELWEID 342
             +DV++   V  +L +      ++   I  A+F        +   + + +    ++   +
Sbjct: 539  LLDVTQREMVRKELKYNQAQFSSMVSNIQGAVFRYRLSEDWRTSEMLYTSPKMAQITGYE 598

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
            + F   +     L + +  A+     L  ++ + +  S  ++     +  ++        
Sbjct: 599  IEFFLGDAPQVNLFDLIHPADVDEFNLQMESSRLDG-SSLRADVRIINASNIERYVQFRA 657

Query: 403  IVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            + + N  G   ++     ++T Q   E K +   +           G+    P     L 
Sbjct: 658  LFSVNASGSAEYLDVSIFDITEQKSSELKLHESEERLDVASSSAQLGMWDSFPLESKVLI 717

Query: 460  NPAFRSLWKTEENRLSP----GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            N    ++   + + L       + +++   T     +  D       I        +  +
Sbjct: 718  NHVCVTMLGYKMDDLCISNDKWSELKSGNRTWLGLIHPDDRELYTELIEAHITGNEEIYR 777

Query: 516  GTLELLS-----DSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKA 565
              L LL+     + +L    +   + Q     +     N+  + + E+ L    +    A
Sbjct: 778  QELRLLNHSGQYEWMLSVGKVFERDNQGRAIRISGINVNIDAAKQLEKELELSKQKADSA 837

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            +  K+ F+ ++S+E+R+P+  IIG + L   +    L+ KQ  Y++ ++ S+  LL ++N
Sbjct: 838  NRAKSDFLANMSHEIRTPMNAIIGMSHLALET---DLDRKQRNYIDKVNRSAESLLGIIN 894

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
            DILD + ++AG + +      L D+L +V   +  K  +  I +   ++  L   F  D 
Sbjct: 895  DILDFSKIEAGKLDIEKIDFSLEDVLEDVSDLVGFKAKDKGIELLFNTESSLPFYFNGDP 954

Query: 685  QRLLQIFSKILSNAMDFSSKGST-VIL---KAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             RL Q+ + + +NA+ F+ +G   + +        N +  F + + G  + ++    +F 
Sbjct: 955  LRLSQVLTNLSNNAIKFTEQGEVQIKVYAHSINETNIELAFEISDTGIGMSKEQQLKLFK 1014

Query: 741  RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             F        R   G GLGL I ++ + L GG +S  S +   +     +P 
Sbjct: 1015 AFSQADSSTTRKHGGTGLGLVISQNLVELMGGVISFESEEGVGSCFKFILPL 1066


>gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
 gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
          Length = 926

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 109/648 (16%), Positives = 241/648 (37%), Gaps = 56/648 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDS-LDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           ++         L      ++ L +  +  ++  +D    + +A+                
Sbjct: 154 DITSLKQAEAMLRESEEKYRSLIEQSIQGMIIAQDNPPRVCFASKPMAVIIGYSPAELTS 213

Query: 236 AIGESRKLFKEEIKKRMISSSAL-------EKNFCETVSTLEHGNNKSYKIVRVL----N 284
              +          ++   ++         ++   E     ++G  +  ++         
Sbjct: 214 FSSKELLALVHPDDRQSYRNAFHDCINSHLQQIRREFRMVHKNGKIRWVELFGTTILYEG 273

Query: 285 SFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIF-----DQNRYLQFHNRSF 335
                 + +D+++     ++L        E+  N+   + +            +  NRS 
Sbjct: 274 DPAIQTVMVDITERKHAEEELVKSGEKLSELFDNIRDGLFVHPVLEGGVPGKFEMVNRSA 333

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            ++       L      D             E        E    ++++ + HK      
Sbjct: 334 SDILGYSEQELLNMSPQDIYAPVFPCTGIDRE---ITLLNEPGSQIFEAVQRHK------ 384

Query: 396 NGQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           NG ++ V V++     + R   I    ++T +     +    +K     +      V + 
Sbjct: 385 NGTSVPVEVSTGRIEISGRSSIISTVRDITTR----KRSYEEMKKITTALQQSPAVVVIT 440

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                I+  NP F  L       +S        +   S+         L A  +   +  
Sbjct: 441 NAHAEIEYVNPRFSELTGFAAEEVSGKNPKVLQSGLMSKETYRQLWITLKAGKVWRGEFF 500

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKA 565
            K   G L           I P+ N Q  +T       ++T+  R    L    E   ++
Sbjct: 501 NKKKNGELY-----WENAIIAPVKNEQGDITNYVAVKEDITERKRLWSELVAAKEKAEES 555

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D +K  F++++S+E+R+P+  I+GF++LLK   L    SK+ +Y+E I  S   +L+++N
Sbjct: 556 DRLKTCFLENMSHEIRTPMNGILGFSELLKEPLLDG--SKKDEYIELIHQSGKRMLSIIN 613

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVAD 683
           D++D++ ++AG + + Y+   L+ + ++++     +     + +             V D
Sbjct: 614 DLIDISKIEAGEIAIQYTEASLDKIFHDLQAFFEPQATRKGLLLHCTGCVPPSASVIVTD 673

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           + RL+QI + ++ NA+ +++ G  +     ++     F V++ G  IP+ + + +F+RF 
Sbjct: 674 KSRLVQILTNLVQNALKYTASGE-ICFGCTKNGDFLDFYVRDTGIGIPDFLTEKIFDRFR 732

Query: 744 SN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   +  GVGLGLSI +S + L GG + + SS    +  +  +P
Sbjct: 733 QAQVDPVREYEGVGLGLSISKSLVELLGGRIGVQSSAGEGSVFSFSLP 780


>gi|332703722|ref|ZP_08423810.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 880

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 110/591 (18%), Positives = 220/591 (37%), Gaps = 60/591 (10%)

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
             T+ +   +     R    +E+ K   S   +     E ++ L   N ++ +       
Sbjct: 167 AATKALSIGRLDHPIRVSGNDEVAKLAASFEDMRVALRERLADLSKANRRAQE------- 219

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
                 A D S++             L +L   I  ++    + + N S  ++    L  
Sbjct: 220 ------ARDESEKRAAE-----LDAALMSLAEGIIFYNTEHQITYLNPSAEKILGFSLEN 268

Query: 346 LATNPSNDELLEFLRSA--NKLPEQLNWKTWKENIFSVYKSSE----THKDTWHLPNGQT 399
           ++  P++  +  F        +P +     W+    +     E        +       +
Sbjct: 269 VSDLPADARVKLFTVRKLDGSIPTKEELVGWRALHGATVHGEEFIIYPQGSSLSSNILSS 328

Query: 400 LHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIK 457
              + TS+ R  G I    N+T +   E       +       +    + +  P  G + 
Sbjct: 329 AAPVRTSDGRTLGAIQTLVNITERKRTEEALRESEERYRSIFHNSHAVMLLADPQTGELV 388

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             NPA  + +          T I  I        N     +  A ++ +   E+   +  
Sbjct: 389 DVNPAACAYYGYSPEECRRMT-IGQI--------NTLPIEEFRARMMEAASKEQNKFEFR 439

Query: 518 LELLSDSVLEYSII--PLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSF 572
             L S  V +  +   P+     +L      ++T+  R E  L +       A+  K+ F
Sbjct: 440 HRLASGEVRDVEVYSGPVRVEGRLLLHSIVHDITERKRLEEDLFQAKAEAEAANRAKSEF 499

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  +IG T+L    +      K   Y+  +  S+  LL+++NDILDL+ 
Sbjct: 500 LASMSHEIRTPMNGVIGLTELALMQEPKG---KVRDYLGLVKQSANSLLDIINDILDLSK 556

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           ++AG ++L  +   L D+L+ + +++        +      D  +  ++  D  RL QIF
Sbjct: 557 IEAGRVELENADFDLRDMLDSLFETMRLTAERKRLSFTAAIDPGVPDWIKGDEGRLRQIF 616

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGD---------------FIFSVKNNGSSIPEDMCK 736
             ++ NA+ ++  G  V +    +N                  + SVK+ G  IP++  +
Sbjct: 617 VNLIGNAVKYTETG-QVSVHVGLENAHDSPVAGDSDKPEHICLLVSVKDTGIGIPKNKLE 675

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +F+ F + A   +  G GLGL+I    + L GG + + S     +T    
Sbjct: 676 KIFDPFDTGARGAKHDGTGLGLTITNRLVELMGGRIIVRSEPGQGSTFTFS 726


>gi|254411776|ref|ZP_05025552.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181498|gb|EDX76486.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 968

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 101/560 (18%), Positives = 219/560 (39%), Gaps = 23/560 (4%)

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
           +L   E +       A  K     V   +    +++++ +      +A I      E  +
Sbjct: 418 ELLIAEGRDISDRKQAEAKLQTAMVELEQRVEERTHELKQTNAQL-QAEILQHQQTEAEL 476

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            +       +     + + + D N      NR+F  +     + +          +    
Sbjct: 477 RNSEQQFRRVFDEAPIGMTLADLNDRYIRVNRAFYSMLGYSQSEVMAL----SFKDITHP 532

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF---EN 418
                E    +   +     ++  + +           L +I   + +G  ++     E+
Sbjct: 533 DELALEIPYMQQLIKGEIDSFQLEKRYIKKNKDLVWVNLTLIALRDKKGEVLYTLAMVED 592

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T +                 ++  +E +  F  DG     N A+   +  + + L    
Sbjct: 593 ITERKQAMEALRQSEARYRAIVEDQTELICRFKTDGTFTFVNDAYCRYFNKQRSELIGYR 652

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSF-------DDERKSLQGTLELLSDSVLEYSII 531
               I      + N+          I ++       D+E +  Q T  ++ D+  E +I+
Sbjct: 653 FKPQIPEIDQEFVNQQFKTLSVEKPIVTYEHRVILPDNEIRWQQWTERVMFDN--EVNIV 710

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                   +T        +AE  + +  E  R+  E+++SFV  VS+E R+PLT I+  +
Sbjct: 711 EFQGVGRDITP-----LKKAEAEIIKALEKERELSELRSSFVSLVSHEFRTPLTAILSSS 765

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL        + K+  + + I  + + +  L++D+L +   +AG +    +++ L    
Sbjct: 766 ELLDRYSKKLTDEKKKAHHQRIQIAVSRMTQLLDDVLTIGKAEAGKLTFKPASMNLIAFC 825

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            ++  ++   + + +  I  +  G  G    D + L  I + ++SNA+ +SS+GS V ++
Sbjct: 826 QDIVDTLQMSISQQH-SINFVCHGDCGDAQMDEKLLQHILNNLISNAIKYSSQGSEVKVE 884

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              +    IF +++ G  IP +  K +F+ F    + G  +G GLGL+IV+  ++LHGG 
Sbjct: 885 LTCEGESAIFHIQDQGIGIPPEDIKKLFSSFQRAGNVGTIQGTGLGLAIVKKCVDLHGGL 944

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S     TT    +P +
Sbjct: 945 ITVESEVGKGTTFTIILPLQ 964



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/383 (12%), Positives = 113/383 (29%), Gaps = 49/383 (12%)

Query: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLRKE--------GQSFDLVAETQNDCAIKIEGR 158
           + + D+L+          I +  + + LRKE         +  D+    Q +  ++    
Sbjct: 388 RYEADILA-----PDQSVITIDFSLKPLRKENGEIELLIAEGRDISDRKQAEAKLQTAMV 442

Query: 159 VSGSCAFLRILSL----DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
                   R   L      + +E+ +      +L N    F+ +FD     +   D    
Sbjct: 443 ELEQRVEERTHELKQTNAQLQAEILQHQQTEAELRNSEQQFRRVFDEAPIGMTLADLNDR 502

Query: 215 ILWANISYKKNTETEGIVFQ----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
            +  N ++                K I    +L  E    + +    ++    E     +
Sbjct: 503 YIRVNRAFYSMLGYSQSEVMALSFKDITHPDELALEIPYMQQLIKGEIDSFQLEKRYIKK 562

Query: 271 HGNNKSYKIVRVLNSF------GEAGIAIDVSKE----ITVNDQLTHTYEILHNLTVAIA 320
           + +     +  +              +  D+++       +         I+ + T  I 
Sbjct: 563 NKDLVWVNLTLIALRDKKGEVLYTLAMVEDITERKQAMEALRQSEARYRAIVEDQTELIC 622

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE-QLNWKTWKENIF 379
            F  +    F N ++   +    + L             R   ++PE    +   +    
Sbjct: 623 RFKTDGTFTFVNDAYCRYFNKQRSELIG----------YRFKPQIPEIDQEFVNQQFKTL 672

Query: 380 SVYKSSETHKDTWHLPNGQTL---HVIVTSNPRGGTIWMFE----NLTVQVDLETKYNTL 432
           SV K   T++    LP+ +                 I  F+    ++T     E +    
Sbjct: 673 SVEKPIVTYEHRVILPDNEIRWQQWTERVMFDNEVNIVEFQGVGRDITPLKKAEAEIIKA 732

Query: 433 VKVQGETIDHLSEGVAVFGPDGR 455
           ++ + E  +  S  V++   + R
Sbjct: 733 LEKERELSELRSSFVSLVSHEFR 755


>gi|149276653|ref|ZP_01882796.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232322|gb|EDM37698.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 828

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 160/390 (41%), Gaps = 23/390 (5%)

Query: 419 LTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           +   + L   Y  L +        +  + +G+      G+    N    ++       + 
Sbjct: 153 IRETIHLGQHYYALEELKVRFNAILQTVEQGIVFIDDSGKNSWINEPAAAILGISGGNVP 212

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           P      +    SR  N+ + +     I TS D   K+ Q         VL     P  +
Sbjct: 213 PAELSAAMQQLRSRADNKEEIFRRGMEIFTSADKRVKNWQWIFSTPETYVLNVCCTPTIS 272

Query: 536 AQTMLTFVNVTDSVR----------AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                      D  +              L EK+    + ++ K+ F+ ++S+E+R+P+ 
Sbjct: 273 EHISGMLWTFDDITQQYLYDEHLKELNVQLEEKSRIADEQNKAKSEFLANMSHEIRTPMN 332

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG T LL+ ++   L+  Q  +VE I  S+  LL ++N+ILD + +++G ++L     
Sbjct: 333 GVIGMTSLLRNTR---LDEDQFDFVESIRISADALLEIINEILDFSKIESGKLELEEHPF 389

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
           VL+ ++ E    ++ K  E ++ +  I D  +    + D  RL QI   ++ NA+ F+ +
Sbjct: 390 VLSKIVEETYDLLSFKAQEKDLDLLYIIDPDVPYEVIGDMTRLRQIIVNLVGNAIKFTDE 449

Query: 705 GSTVI-LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           G  +  +K     G   +  FSV+++G  IP+D    +FN F        R   G GLGL
Sbjct: 450 GEILTSIKLLEKKGSTYELEFSVQDSGIGIPQDKMHKLFNSFSQVDSSTTRKYGGTGLGL 509

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I    I    G + + S     TT    I
Sbjct: 510 VISARLIQKMNGRIWVESEVNVGTTFKFTI 539


>gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
          Length = 1113

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 233 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 292

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 293 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 350

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 351 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 410

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 411 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 467

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 468 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 527

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 528 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 587

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 588 LVELMGGQITVHSEEGKGSTFEFS 611



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 243 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 300

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 301 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 360

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 361 ILLDMTERKEMEDELRKAKEAADAMSQA 388


>gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
 gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
          Length = 1331

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|325289318|ref|YP_004265499.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964719|gb|ADY55498.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 675

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 196/519 (37%), Gaps = 36/519 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
              +++L      +  +   + + D+   +   NRS  +L        A  P  +  +  
Sbjct: 5   TDQSERLEFIAAAMAGMGDGVILTDRAGRILDINRSAEQLTGWTEKEAAGKPCGEVFVLV 64

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG---G 411
                K  E   + + ++                    G+T  +  + +P     G   G
Sbjct: 65  DTVTGKRLESPVFISLRDEAP----VGLPKHSALMTREGKTFFISASCSPVRASDGKAQG 120

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +F ++     +E +           ++ L  G+A+ G D  ++  N     L++  E
Sbjct: 121 AVLVFRDIDRLKQIEEELKKERNNLNNVLEALPAGIALVGEDAVVRWVNRPLLELFQIRE 180

Query: 472 NRL-----SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK----SLQGTLELLS 522
             +       G H             +    ++   I     ++       LQ +     
Sbjct: 181 ENILGQRFGNGAHCIYSREKGCGEGEKCRFCEIRQNIGLVLREKVSLKDVMLQRSFHRAE 240

Query: 523 D---SVLEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +     L  S IPL  A   + +L   ++T+    E AL +  +    A+ +K+ F+ ++
Sbjct: 241 EENCRWLNISFIPLAAAGEKRIVLAIEDITEQKNYEEALQKSRDEAESANRVKSEFLANM 300

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  ++G  DLL  +     + +Q + +     S+  L  +++ ILD + ++AG
Sbjct: 301 SHEIRTPLNGLVGMMDLLSRT---DPDEEQQECIRMAKFSANTLFKVIDGILDFSRIEAG 357

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKIL 695
            + +   +  L  LL EV +       +  + ++      L  ++  D   L QI + ++
Sbjct: 358 KIAIAKISFDLKALLEEVIKIHTVLAEQKGLALEHDIPPDLPPYLTGDPDHLRQILNNLI 417

Query: 696 SNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA+ F+ +G   V ++  R  G   +  F V ++G  I       +F RF        R
Sbjct: 418 GNALKFTDRGQIKVSVREIRHQGQQVELEFCVADSGVGISPGKMDLLFKRFSQVDSSVTR 477

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           R  G GLGL+I +    L GG +   S     +     +
Sbjct: 478 RYSGTGLGLAICKQLAELMGGAIRAESEMGKGSVFRFTL 516



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 110/302 (36%), Gaps = 38/302 (12%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRK 242
           +    S  +         +   V   D+AG IL  N S ++ T  TE     K  GE   
Sbjct: 3   QNTDQSERLEFIAAAMAGMGDGVILTDRAGRILDINRSAEQLTGWTEKEAAGKPCGEVFV 62

Query: 243 LFKEEIKKRMISSSALEKNFCETV-----STLEHGNNKSYKIVR----VLNSFGEAGIAI 293
           L      KR+ S   +       V     S L     K++ I      V  S G+A  A+
Sbjct: 63  LVDTVTGKRLESPVFISLRDEAPVGLPKHSALMTREGKTFFISASCSPVRASDGKAQGAV 122

Query: 294 ----DVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLA 344
               D+ +    E  +  +  +   +L  L   IA+  ++  +++ NR  +EL++I +  
Sbjct: 123 LVFRDIDRLKQIEEELKKERNNLNNVLEALPAGIALVGEDAVVRWVNRPLLELFQIREEN 182

Query: 345 FLATNPSNDELLEFLRSAN-KLPEQLNWKTWKENIFSVYKSSETHKDT-----WHLP--- 395
            L     N     + R       E+  +   ++NI  V +   + KD      +H     
Sbjct: 183 ILGQRFGNGAHCIYSREKGCGEGEKCRFCEIRQNIGLVLREKVSLKDVMLQRSFHRAEEE 242

Query: 396 NGQTLHVIVTSNPRGG---TIWMFENLTVQVDLETKYN-------TLVKVQGETIDHLSE 445
           N + L++        G    +   E++T Q + E           +  +V+ E + ++S 
Sbjct: 243 NCRWLNISFIPLAAAGEKRIVLAIEDITEQKNYEEALQKSRDEAESANRVKSEFLANMSH 302

Query: 446 GV 447
            +
Sbjct: 303 EI 304


>gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
 gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
          Length = 1342

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 462 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 521

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 522 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 579

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 580 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 639

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 640 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 696

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 697 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 756

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 757 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 816

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 817 LVELMGGQITVHSEEGKGSTFEFS 840



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 472 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 529

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 530 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 589

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 590 ILLDMTERKEMEDELRKAKEAADAMSQA 617


>gi|323139164|ref|ZP_08074220.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395547|gb|EFX98092.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 787

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 125/645 (19%), Positives = 233/645 (36%), Gaps = 58/645 (8%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
                + + + DSL   +   D+ G IL  N  +++     G   +  +  +  L     
Sbjct: 10  RTAEELVRGILDSLPQHIALLDRDGVILAVNEPWRRFARQGGARPEAVLEGANYLAACRA 69

Query: 249 KKRMISSSALEK-------------NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-- 293
                 ++A E               F              +++     +FG +   +  
Sbjct: 70  AAETGDATAREALAGLTKLFSGACDAFTFEYPCATPERELWFEMHASRAAFGVSKFVVSH 129

Query: 294 -DVSKEITVND-----------QLTHTYEILHNLTVAIAI-FDQNRYLQFHNRSFVELWE 340
            DV+      +                  IL  + + ++I  D        NR+  EL  
Sbjct: 130 ADVTTRKNAEEALRESERRERRHAAELEAILDTVPIGVSIALDPRGDHMRGNRACEELLG 189

Query: 341 I-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNG 397
               A L+    +   L   R   KL       +  E       + E   D      P+G
Sbjct: 190 TTPGAELSMTAPDAPALRVFRQGRKL-------SVDELPLQRALAGELVSDILEIVRPDG 242

Query: 398 QTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           +T+ V   + P         G +  F ++T     E       +     I+ L +GV V 
Sbjct: 243 RTVTVYAKAAPLHYENGETNGAVGAFLDITSLKRAEEALRESEERHRTLIEALGDGVFV- 301

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             D R   +N A  ++              + IA  C   +NE     +        + E
Sbjct: 302 AQDYRFVFANAALPAMLGYTPAEFWDMPFDKVIAPECLPLWNERFAQRIGDGPEPPGNYE 361

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            +++  +     D  L    I        +    +VT+  + E+AL         AD  K
Sbjct: 362 ARAVPKSGGPPIDMELRARRIQYRGRPAVLGVLRDVTERKKTEQALI-------AADRRK 414

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQYVEYISASSTILLNLVNDIL 628
           + F+  +++ELR+PL  I     +L+   L G         VE I      L+ LV+++L
Sbjct: 415 DEFLATLAHELRNPLAPIHDAAHVLRRMSLTGPDGENSRALVEIIDRQVGHLIRLVDELL 474

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +++ +  G ++L    I L  ++ +  ++    +      ++V          AD  R+ 
Sbjct: 475 EVSRITRGKIELMIERIDLAAVIRQAVETSRPVIDRGGHALRVELPDAPLPLDADPVRMT 534

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+F+ +L+NA  ++  G  ++++A R   + + +V ++G  IP +M   VF+ F      
Sbjct: 535 QVFTNLLNNAAKYTEPGGEIVVRADRRGREAVITVTDSGLGIPPEMLPRVFDLFTQVDRT 594

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
               + G+G+GL++V S + L GG V   S+     TT   R+P 
Sbjct: 595 LGRAQGGLGIGLALVRSLLKLQGGSVEAESAGLGRGTTFTIRLPL 639


>gi|220909140|ref|YP_002484451.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865751|gb|ACL46090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1391

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 143/823 (17%), Positives = 278/823 (33%), Gaps = 111/823 (13%)

Query: 49   NSLAKKVNETYSFLSEICDQLSKYHS---LLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
            +       E +  L E    L++  +   LLTE+   T+ W    +T  I+        +
Sbjct: 442  SQWLGLWTEIH-ELKETQIALAQSEAQFRLLTEHLPETVFWVTDPQTERILYVSPAYERL 500

Query: 106  PQTDTDLLSFE--NWLK---FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVS 160
                 D L     +WL         ++  A     + G S+D          +  +GR  
Sbjct: 501  WGQPRDRLYSHHQSWLDGIHPQDRPRIQTAYAAQTRTG-SYDEEY-----RILHPDGR-- 552

Query: 161  GSCAFLRILS------------LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
               A++R               L G+   +         L    + F+ L +   F V  
Sbjct: 553  --LAWVRDRRFAIPNATGEVYRLVGLTENITARKRSEIDLRQSEAKFRRLVEISMFGVAI 610

Query: 209  RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
             D +G + +AN +  K         +        L   E     +   A E+     VST
Sbjct: 611  GDFSGRMTYANDALLKMIGYSREELEAGQIRWIDLTPPEHLP--LDWQAGEELRQFGVST 668

Query: 269  LEHGNNKSYKIVRVLNSFGEA-------------GIAIDVSKEITVNDQLTHTYEIL--- 312
                        RV    G A                +D+S       QL    + L   
Sbjct: 669  PFEKEYMHKDGHRVPILIGGALLGEPYVDQELIIAFYLDLSGIKQTEHQLRAALQQLNSH 728

Query: 313  -HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
              N  +A+  +D +  ++  + +   ++      +     N+  L +     K+    + 
Sbjct: 729  VENTPMAVIEWDAHFIVRRWSGAAPHIFGWPAEEVLGRCINELNLVYEEDLAKVTNVCD- 787

Query: 372  KTWKENIFSVYKSSETHKDTWHLPNGQTLHVI----VTSNPRGGTIWMFE---NLTVQVD 424
                  I S  +      +  +  +G  LH +      ++P G    +     + T QV 
Sbjct: 788  -----RILSGAEPQIISHNRNYKKDGSVLHCVWYNSTLTDPMGQVTSILSLVLDRTEQVR 842

Query: 425  LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
             E       +        ++         G +   N A + ++++E      G H   + 
Sbjct: 843  AEESLRQSEERFRLAARAVT---------GMVYDWNVATQEVYRSEGLYSLIGVHPEEVP 893

Query: 485  ATCSRYYNESDGWDLFA-----AIITSFDDERKSLQGTLELLSDSVLEY----------- 528
             T + +  +    DL        +I +   +    +  +       + +           
Sbjct: 894  PTQAWWSEQIHPEDLVHLYPQMQVIMAGQGDSYDFEYRVRHRDGHWVNFWDRGYLIRNSQ 953

Query: 529  -SIIPLPNAQTMLTFVNVTDSVRAERALTEK--NEALRKADEIKNSFVQHVSYELRSPLT 585
              +I +  + T +T     +  R    + E+   E    A+ +K+ F+  +S+ELR+PL 
Sbjct: 954  GQVIRVVGSSTDITLRKQLEQQREHLLIQEQTAREQAELANRMKDEFLAVLSHELRTPLN 1013

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             I+G+  LL+T       ++  + +  I  ++ + + L+ D+LD + +  G + L  + +
Sbjct: 1014 PILGWCKLLQTRPFEP--ARAMEALRTIERNAQLQVQLIEDLLDFSKIVQGKLPLQIAPV 1071

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             L+ ++    +S+        I+++   D        D  RL Q+   +LSNA+ F+ +G
Sbjct: 1072 QLSSIITAALESVRLAAEAKTIQLQTCLDQHPILVWGDANRLQQVVWNLLSNAIKFTPEG 1131

Query: 706  STVILKAARDNG---------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
              V ++     G                    V + G  I  D    VF+ F        
Sbjct: 1132 GQVEVRLESGEGSPGKRAHPMPVNTSSYAQICVIDTGKGIASDFLPHVFDYFRQEDGAMT 1191

Query: 749  GQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
             +  G+GLGL+IV+  + +HGG +   S       T   R+P 
Sbjct: 1192 RRYGGLGLGLAIVKQIVEMHGGRIWAESPGLGEGATFTVRLPL 1234



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/501 (10%), Positives = 148/501 (29%), Gaps = 75/501 (14%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQ-----LHQRI 103
             L  ++   +  ++ + +  ++YH        L          P+          +Q  
Sbjct: 319 GQLRGELARQHQVITALQESEARYHRRCEAVPGLLF-----TTLPDGWSDYCNSHFYQFT 373

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKA-TEKLRKEGQSFDLVAETQN---------DCAI 153
            +         +   +      +L +   + LR +G+ F +    +            +I
Sbjct: 374 GMTADAARGWGWMTAVYPEDRERLRENWLDALR-QGKPFAMKYRLRRADGEYRWFLGRSI 432

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV-WHRDQA 212
            I+        +L      G+++E+ E       L+   + F++L + L   V W  D  
Sbjct: 433 PIQEETGQISQWL------GLWTEIHELKETQIALAQSEAQFRLLTEHLPETVFWVTDPQ 486

Query: 213 G-DILWANISY-------KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC- 263
              IL+ + +Y       +    +    +   I    +   +        + + ++ +  
Sbjct: 487 TERILYVSPAYERLWGQPRDRLYSHHQSWLDGIHPQDRPRIQTAYAAQTRTGSYDEEYRI 546

Query: 264 ----ETVSTLEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYEILHNLTV- 317
                 ++ +     + + I           G+  +++        L  +      L   
Sbjct: 547 LHPDGRLAWVRD---RRFAIPNATGEVYRLVGLTENITARKRSEIDLRQSEAKFRRLVEI 603

Query: 318 ---AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
               +AI D +  + + N + +++       L            +R  +  P +     W
Sbjct: 604 SMFGVAIGDFSGRMTYANDALLKMIGYSREELEAG--------QIRWIDLTPPEHLPLDW 655

Query: 375 K-ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLE 426
           +       +  S   +  +   +G  + +++     G         I  + +L+     E
Sbjct: 656 QAGEELRQFGVSTPFEKEYMHKDGHRVPILIGGALLGEPYVDQELIIAFYLDLSGIKQTE 715

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----------EENRLSP 476
            +    ++     +++    V  +     ++  + A   ++             E  L  
Sbjct: 716 HQLRAALQQLNSHVENTPMAVIEWDAHFIVRRWSGAAPHIFGWPAEEVLGRCINELNLVY 775

Query: 477 GTHIRNIAATCSRYYNESDGW 497
              +  +   C R  + ++  
Sbjct: 776 EEDLAKVTNVCDRILSGAEPQ 796


>gi|300868056|ref|ZP_07112694.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333976|emb|CBN57872.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1224

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 138/747 (18%), Positives = 264/747 (35%), Gaps = 140/747 (18%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN---TETEGIVF 233
           ++AE      +L   +S+ + +F+S D  +   D+ G +   N  + +     +   ++ 
Sbjct: 200 DIAERQRLMGELERSLSMLQAVFESTDAGILALDRQGKVSNFNQKFVEMWGLVDNAMLLA 259

Query: 234 QKAIGESRKL--------FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
           Q   G    L        + +   K  I  SA  +   +  + LE  + +  ++    + 
Sbjct: 260 QPGNGPPTALPFVIRQLKYPQAFLKTAIKLSA--EPDAQINNLLEFKDGRILEVSSHPSQ 317

Query: 286 FGEAGIAI-----DVSKEITVNDQLTH---TYEILHNLTVAIAIFDQN------------ 325
            G+  +       DV++   V   L +     +++ NL+                     
Sbjct: 318 VGKKIVGRVWIFRDVTERKQVEKDLEYRIQFEQLITNLSTHFISLSPEEIDLGIHQALEE 377

Query: 326 -RYLQFHNRSFVELWEIDLAFL-----------------------ATNPSNDELLEFLRS 361
              L   +RS++ L+  D + L                       +  P   E L+    
Sbjct: 378 IGRLSAVDRSYIYLFVDDGSQLENVCEWCAAGIENQEGRLKTVRRSQIPWIVEQLDRF-E 436

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKD----TWHLPNGQTLHVIV------------- 404
              +PE  N  T      +  +  +  +      W     +   VI+             
Sbjct: 437 NVYIPELENQPTNILAEVACLRDRDREETFSAPPWDSATEKMQSVIIIPLVCSKELVGFL 496

Query: 405 ---------TSNPRGGTIW-----MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
                    T +P   T++     M  N   +   E              ++  EG+   
Sbjct: 497 GFEAQPSPKTRSPEILTLFKMVGEMLANALERKRAEEALRQAEIKYRSIFENAVEGIFQS 556

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI------I 504
             DGR   +NPA   ++       +P   +  +    S+ Y + +    F A       I
Sbjct: 557 TADGRYISANPALAHIYGYS----NPEEMLAQLTDIGSQLYVDPNRRQEFLAAMETQNEI 612

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             F+ E     G++  +S++           +    T  +++D  +AE +     EA   
Sbjct: 613 LRFESEVYRRDGSIIWISENARAVRASGGAISCYEGTVEDISDRKKAEVSCQLALEAAES 672

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K++F+ ++S+ELR+PL  IIG++++L               ++ I  +   LL+L+
Sbjct: 673 ANRAKSTFLANMSHELRTPLNAIIGYSEMLAEEAEDLAVKDFIPDLDKIRTAGKHLLSLI 732

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDILD++ ++AG M +      +  L++ V  +    + +N   +KV+     G+  AD 
Sbjct: 733 NDILDISKIEAGRMDVYLENFDIPALIDGVVATAQPLVEKNGNTLKVLCPNSTGTMYADV 792

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------------------ 714
            ++ QI   +LSNA  F+ +G T+ L   R                              
Sbjct: 793 TKMRQILLNLLSNAAKFTQEG-TITLTVERVKHEKLTSPEVNFIPEQSQGTLLGLLQNPD 851

Query: 715 --------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
                   D    IF V + G  +     K +F  F        R   G GLGL+I + F
Sbjct: 852 ILSQFLIYDCDSLIFRVADTGIGMNPQQLKQLFQPFTQGDASTTRKYGGTGLGLAISQRF 911

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
             + GG +++ S+    T     +PS+
Sbjct: 912 CQMMGGDIAVESALGEGTVFTVVLPSE 938



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 92/312 (29%), Gaps = 30/312 (9%)

Query: 293 IDVSKEITVND-----QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           +D   E    +     ++     +L +L V +   D   Y+ + N     L     + LA
Sbjct: 50  LDAEAEALDYEASGLWEVDGLSAVLDSLGVGLCTLDTRGYVLYINPEGERLLGWGFSELA 109

Query: 348 TNPSNDELLEFL-------------RSANKLPEQLNWKTWKENIFSVYKSSETHKDT--- 391
             P    +   L             +       ++  +  + ++       +   ++   
Sbjct: 110 GAPLLARIGVTLGKAGTRVQGEGGNKHEGASESEIKARKSQLSLREAIAIGQACSNSDGK 169

Query: 392 WHLPNGQTLHVIVTSNP----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +   +G  L V    NP     G  + +F ++  +  L  +    + +     +    G+
Sbjct: 170 FLCQDGTILSVCYFFNPIVGGDGSGVLVFFDIAERQRLMGELERSLSMLQAVFESTDAGI 229

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                 G++   N  F  +W   +N +                  +      F       
Sbjct: 230 LALDRQGKVSNFNQKFVEMWGLVDNAMLLAQPGNGPPTALPFVIRQLKYPQAFLKTAIKL 289

Query: 508 DDER-KSLQGTLELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEAL 562
             E    +   LE     +LE S  P          +  F +VT+  + E+ L  + +  
Sbjct: 290 SAEPDAQINNLLEFKDGRILEVSSHPSQVGKKIVGRVWIFRDVTERKQVEKDLEYRIQFE 349

Query: 563 RKADEIKNSFVQ 574
           +    +   F+ 
Sbjct: 350 QLITNLSTHFIS 361


>gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
 gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
          Length = 590

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 164/376 (43%), Gaps = 28/376 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E++T Q   + +  TL       I+++  G+ +    G I L N A++  +    +  
Sbjct: 234 LQESITNQEMQQDRLRTL-------IENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDF 286

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                          YY   +  ++   +   F  E K  +  +  L+   +E     + 
Sbjct: 287 LYHL-----------YYEVFEHKEIIKLVEKIFMTEVKVRKQVVLPLN---IERRYFDVY 332

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  +       D  +    +      L+K ++++  FV +VS+EL++P+T+I GF++ L
Sbjct: 333 GAPIIGLN----DEWKGIVLVFHDITELKKLEQVRRDFVANVSHELKTPITSIKGFSETL 388

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +     +Q Q++  I   S  + +L+ D+LDL+ V+    KL+  ++ LN LL EV
Sbjct: 389 LDGAMEDPQLRQ-QFLSIILTESQRMESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEV 447

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              ++ +  E  I + + +  +      D QRL+Q+F  ++ NA+ ++  G TV +    
Sbjct: 448 TTVLSNRATEKEITLTLDTLPEEAWIDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLEE 507

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
           +       V++ G  I  D    +F RF            G GLGL+IV+  +  H G +
Sbjct: 508 EEETITVHVQDTGIGIDSDEISRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHRGEI 567

Query: 773 SISSSDEGVTTINCRI 788
            + S     TT + ++
Sbjct: 568 EVKSEVNKGTTFSVKL 583



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 290 GIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            +A ++ + IT  + Q      ++ N+   + + D   Y+   NR++ E + I       
Sbjct: 229 ALARNLQESITNQEMQQDRLRTLIENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDFLY 288

Query: 349 NPSNDELLEF-----LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           +    E+ E      L     + E       ++ +         + D +  P      +I
Sbjct: 289 H-LYYEVFEHKEIIKLVEKIFMTEVKV----RKQVVLPLNIERRYFDVYGAP------II 337

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYN 430
             ++   G + +F ++T    LE    
Sbjct: 338 GLNDEWKGIVLVFHDITELKKLEQVRR 364


>gi|150006477|ref|YP_001301221.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149934901|gb|ABR41599.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 781

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 115/547 (21%), Positives = 218/547 (39%), Gaps = 33/547 (6%)

Query: 258 LEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLT 316
             +           G    Y+  +  L+      +  D+S+ +     L     IL  ++
Sbjct: 111 TGRGSTAHHELDVDGTLHYYENRIFPLDEEYVLIMCRDISERVATQQNLEIFKRILDRVS 170

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            +I     +  L + NR F+E + +    L T    D     L  +    EQ + +  + 
Sbjct: 171 DSILAVSADGTLVYANRQFIEEYGV-KGELGTQKIYD-----LPVSLNTKEQFDKRVQEI 224

Query: 377 NIFS---VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTL 432
                   Y++  T      L   Q    ++  N     IW F +++T  +    +   L
Sbjct: 225 RDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQ-NQGEEMIWFFTQDITDVIKNRDELREL 283

Query: 433 VKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             +    ++++   + V  P  D R    N AF S  K   ++    T         +  
Sbjct: 284 NYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGRTDFEVFPEYENAE 343

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEY--SIIPLPNAQ--TMLTFVN 544
               D  +L          ER  +Q T    +    +++   +++PL       +    +
Sbjct: 344 KFHRDDLELIRT------RERMEMQETYVTATGEPRIVQTLKTLVPLEGRTPLIIGISWD 397

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+    E+ L        ++D +K +F+ ++S+E+R+PL  I+GF+ L+    +     
Sbjct: 398 ITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSHLM---TIADNAE 454

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +  Y + I+ +S ILL L+NDILDLA ++AG ++     + L +L   V +    ++  
Sbjct: 455 DEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRVQT 514

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + + + +         D+ R++Q+ + +++NA+ F+ KG  +            F VK
Sbjct: 515 -GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFKGE-IRFGFEVREEYIDFYVK 572

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  I E+  K +F RFV      Q  G GLGL+I    +   GG ++  S     +T 
Sbjct: 573 DTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAICRVIVEKLGGEITAESKLNEGSTF 630

Query: 785 NCRIPSK 791
              IP K
Sbjct: 631 RFTIPYK 637



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 100/293 (34%), Gaps = 39/293 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           +      ++ +FK + D +   +      G +++AN  + +    +G +  + I +    
Sbjct: 151 ERVATQQNLEIFKRILDRVSDSILAVSADGTLVYANRQFIEEYGVKGELGTQKIYDLPVS 210

Query: 244 FK--EEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVL----NSFGEAGIAIDV 295
               E+  KR+        NF         G    + +++   +              D+
Sbjct: 211 LNTKEQFDKRVQEIRDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQNQGEEMIWFFTQDI 270

Query: 296 SKEITVNDQLTH----TYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATN 349
           +  I   D+L         IL+N+ V + + D        + N++F    +I  +     
Sbjct: 271 TDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGR 330

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNG--QTLHVIVT 405
              +            PE  N + +  +   + ++ E  +  +T+    G  + +  + T
Sbjct: 331 TDFEVF----------PEYENAEKFHRDDLELIRTRERMEMQETYVTATGEPRIVQTLKT 380

Query: 406 SNPRGG----TIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
             P  G     I +  ++T   ++E +            +++   + ++S  +
Sbjct: 381 LVPLEGRTPLIIGISWDITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEI 433



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 23/169 (13%)

Query: 306 THTYEILHNLTVAIAIFDQNRY--LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
            +   IL +L   + +F+          N                  SN++    +R  +
Sbjct: 43  KYAVRILDSLPDMLTVFNHEEMGIEVVSN----------EETNHVGVSNNDFKG-MRMQD 91

Query: 364 KLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQT--LHVIVTSNPRGGTIWMFENL 419
            +P++   N     + + S  + S  H +     +G        +        + M  ++
Sbjct: 92  MVPKEAYHNIHNNLQKVISTGRGSTAHHEL--DVDGTLHYYENRIFPLDEEYVLIMCRDI 149

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           + +V  +      +++    +D +S+ +     DG +  +N  F   + 
Sbjct: 150 SERVATQQN----LEIFKRILDRVSDSILAVSADGTLVYANRQFIEEYG 194


>gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
 gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
          Length = 1331

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1079

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 116/667 (17%), Positives = 227/667 (34%), Gaps = 68/667 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTE--TEG 230
           +  E++E     ++LS          +SLD            ++ AN + +   +   + 
Sbjct: 283 LEGEISERRKTEQQLSEQARFLTTTLESLDHPFLVISVADSKVVMANSAARDLCDDWHQP 342

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET-VSTLEHGNNKSYKIVRVL--NSFG 287
             + +    +      +    +    +  K      V     G     ++      N  G
Sbjct: 343 TCYARTQRLNGNCSDGDHPCTLARVKSELKPITIDYVHPNVDGETMYVEVHGYPIFNDHG 402

Query: 288 E----AGIAIDVSKEITVNDQLT-----------------------------HTYEILHN 314
           E       ++DV++      QL                              H   ++ N
Sbjct: 403 ELVNIIEYSLDVTEHKRAQQQLQEAKDQLEVRVEERTGELKKAQKILASRERHFRRLIEN 462

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-PSNDELLEFLRSANKLPEQLNWKT 373
           +T  I I D +  + + + +  +L+   +  +  +      + + LR  +       + T
Sbjct: 463 VTDIITIVDADGIVGYTSPAAEKLFGRSVEDMVGHDIREFVVQDDLRHIDLPTLHQQFGT 522

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
                + VY  +            Q L   +        +  F   +  +    +     
Sbjct: 523 TTPVEYRVYDHAGQI---------QVLESFIERFENESGLEQFILCSRLITQRKRAEEEN 573

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +V    +      V +    G+I+  NP F           + G     +     R  N 
Sbjct: 574 RVLSMVVAQNPSSVVITDVHGQIEYVNPYFEQ---------ATGYRFDEVVGKNPRVLNA 624

Query: 494 SDGW-DLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSV 549
                 +F  +  +  D        +    D  L      + P+ N Q  ++        
Sbjct: 625 GKTPKQVFTQMWQTILDGHVWQGEFVNRKKDGTLYDESVLVSPIKNDQGEISHFVALKEN 684

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E  L +  +   +A+  K+ F+  +S+ELR+PL  I GF+ L+ +S+   LN K    
Sbjct: 685 ITE--LKKARKQAEEANRAKSEFLSRMSHELRTPLNAINGFSQLMLSSRKNPLNDKHRSM 742

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  +   LL L+N++LDLA ++AG + L+   +    ++NE    + +   ++ +  
Sbjct: 743 VEQIDGAGKHLLELINEVLDLARIEAGKLSLSVEAVDPCHIINECLPLLHSLAEQHQVTF 802

Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
                +       AD  R  Q+   +LSNA  ++  G  V +    +   G   F V +N
Sbjct: 803 HSCCGEQTFPLVKADYTRTKQVLVNLLSNAAKYNRPGGDVTIHVQANEPTGFLRFQVIDN 862

Query: 727 GSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  I E+  K +F  F   A       G G+G++I +  +   GG +   S     +T  
Sbjct: 863 GLGIAEEKQKQLFVPFARLAQDSENIEGTGIGMTITKQLVEAMGGQIDFESRYGQGSTFW 922

Query: 786 CRIPSKE 792
             +P  +
Sbjct: 923 FTLPLAD 929


>gi|294775421|ref|ZP_06740936.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294450741|gb|EFG19226.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 781

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 115/547 (21%), Positives = 218/547 (39%), Gaps = 33/547 (6%)

Query: 258 LEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLT 316
             +           G    Y+  +  L+      +  D+S+ +     L     IL  ++
Sbjct: 111 TGRGSTAHHELDVDGTLHYYENRIFPLDEEYVLIMCRDISERVATQQNLEIFKRILDRVS 170

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            +I     +  L + NR F+E + +    L T    D     L  +    EQ + +  + 
Sbjct: 171 DSILAVSADGTLVYANRQFIEEYGV-KGELGTQKIYD-----LPVSLNTKEQFDKRVQEI 224

Query: 377 NIFS---VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTL 432
                   Y++  T      L   Q    ++  N     IW F +++T  +    +   L
Sbjct: 225 RDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQ-NQGEEMIWFFTQDITDVIKNRDELREL 283

Query: 433 VKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             +    ++++   + V  P  D R    N AF S  K   ++    T         +  
Sbjct: 284 NYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGRTDFEVFPEYENAE 343

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEY--SIIPLPNAQ--TMLTFVN 544
               D  +L          ER  +Q T    +    +++   +++PL       +    +
Sbjct: 344 KFHRDDLELIRT------RERMEMQETYVTATGEPRIVQTLKTLVPLEGRTPLIIGISWD 397

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+    E+ L        ++D +K +F+ ++S+E+R+PL  I+GF+ L+    +     
Sbjct: 398 ITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSHLM---TIADNAE 454

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +  Y + I+ +S ILL L+NDILDLA ++AG ++     + L +L   V +    ++  
Sbjct: 455 DEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRVQT 514

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + + + +         D+ R++Q+ + +++NA+ F+ KG  +            F VK
Sbjct: 515 -GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFKGE-IRFGFEVREEYIDFYVK 572

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  I E+  K +F RFV      Q  G GLGL+I    +   GG ++  S     +T 
Sbjct: 573 DTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAICRVIVEKLGGEITAESKLNEGSTF 630

Query: 785 NCRIPSK 791
              IP K
Sbjct: 631 RFTIPYK 637



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 100/293 (34%), Gaps = 39/293 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           +      ++ +FK + D +   +      G +++AN  + +    +G +  + I +    
Sbjct: 151 ERVATQQNLEIFKRILDRVSDSILAVSADGTLVYANRQFIEEYGVKGELGTQKIYDLPVS 210

Query: 244 FK--EEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVL----NSFGEAGIAIDV 295
               E+  KR+        NF         G    + +++   +              D+
Sbjct: 211 LNTKEQFDKRVQEIRDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQNQGEEMIWFFTQDI 270

Query: 296 SKEITVNDQLTH----TYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATN 349
           +  I   D+L         IL+N+ V + + D        + N++F    +I  +     
Sbjct: 271 TDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGR 330

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNG--QTLHVIVT 405
              +            PE  N + +  +   + ++ E  +  +T+    G  + +  + T
Sbjct: 331 TDFEVF----------PEYENAEKFHRDDLELIRTRERMEMQETYVTATGEPRIVQTLKT 380

Query: 406 SNPRGG----TIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
             P  G     I +  ++T   ++E +            +++   + ++S  +
Sbjct: 381 LVPLEGRTPLIIGISWDITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEI 433



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 23/169 (13%)

Query: 306 THTYEILHNLTVAIAIFDQNRY--LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
            +   IL +L   + +F+          N                  SN++    +R  +
Sbjct: 43  KYAVRILDSLPDMLTVFNHEEMGIEVVSN----------EETNHVGVSNNDFKG-MRMQD 91

Query: 364 KLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQT--LHVIVTSNPRGGTIWMFENL 419
            +P++   N     + + S  + S  H +     +G        +        + M  ++
Sbjct: 92  MVPKEAYHNIHNNLQKVISTGRGSTAHHEL--DVDGTLHYYENRIFPLDEEYVLIMCRDI 149

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           + +V  +      +++    +D +S+ +     DG +  +N  F   + 
Sbjct: 150 SERVATQQN----LEIFKRILDRVSDSILAVSADGTLVYANRQFIEEYG 194


>gi|284038192|ref|YP_003388122.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283817485|gb|ADB39323.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1226

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 110/539 (20%), Positives = 228/539 (42%), Gaps = 39/539 (7%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           +  +++  ++      IA   S+   ++ Q      I  + T  I   ++   L   N++
Sbjct: 422 RDLELLEFISGQVALAIARKQSE-ARLDKQNARLNAIFDSSTYLIWSVNKALKLTSFNKN 480

Query: 335 FVELWEI----DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHK 389
           +  L E       +  A+ P             ++    N K  ++     ++  ++  +
Sbjct: 481 YTRLIEYQLNESPSIQASAPDLGW---------RMIGADNRKNLEDRYRQAFRGFAQNFE 531

Query: 390 DTWHLPNGQTLHVIVTSNPR---GGTI----WMFENLTVQVDLETKYNTLVKVQGETIDH 442
             +  P G+T  +    NP    GG I     +  ++T +   E       +      ++
Sbjct: 532 LFFETPKGETY-LEFHLNPILLAGGVIDEVSGIARDITNRKRAEIATRQSEEKFRGIFEN 590

Query: 443 LSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           L +  A     GRI + +P+ F+ +  T +  L        I     R+     G +   
Sbjct: 591 LQDIYARVDRKGRITMISPSVFKRMGYTPDEVLGQEITRFFIDENDIRHAMFKLGRN--- 647

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             + +F+   +   G+      ++L  +  P  ++   +   ++T+  R    L +    
Sbjct: 648 RSLRNFEASMRRKDGSERQFMFNMLMLNEGPGSDSVVAVLARDITELKRQSAELVKAKNE 707

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             ++ ++K  F+ ++S+E+R+P+  +IG  DLL  +K   L+ +Q  YV+ +  SS  LL
Sbjct: 708 AERSLKVKEQFLANMSHEIRTPMNGVIGMIDLLNDTK---LDEEQRSYVKTVKRSSETLL 764

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           N++NDILDL+ ++AG M L+ + +   ++  ++      + +  N  +       L +  
Sbjct: 765 NILNDILDLSKIEAGKMVLHEAPVAFKEIFEKLIALFGQQANSKNNELTYHLGSDLPTFV 824

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735
           +AD+ RLLQ+ S + SNA+ F+ +  T+ ++A+  +           VK++G  I +   
Sbjct: 825 IADQTRLLQVLSNLTSNAIKFT-ENGTIRVEASLISKRGKFNRIRIEVKDSGIGISQQNI 883

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +FN F       ++   G GLGL+I +   +L  G + + S+    +T    I  KE
Sbjct: 884 NLLFNSFSQVDTSSRKSFGGTGLGLAISKELASLMKGEIGVDSTVGMGSTFWFTIELKE 942



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 30/302 (9%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           + G  +          +L    +    +FDS  +L+W  ++A  +   N +Y +  E + 
Sbjct: 430 ISGQVALAIARKQSEARLDKQNARLNAIFDSSTYLIWSVNKALKLTSFNKNYTRLIEYQL 489

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET---------VSTLEHGNNKSYKIVR 281
                    +  L    I      +                     T +      + +  
Sbjct: 490 NESPSIQASAPDLGWRMIGADNRKNLEDRYRQAFRGFAQNFELFFETPKGETYLEFHLNP 549

Query: 282 VLNSFGEA----GIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
           +L + G      GIA D++     EI           I  NL    A  D+   +   + 
Sbjct: 550 ILLAGGVIDEVSGIARDITNRKRAEIATRQSEEKFRGIFENLQDIYARVDRKGRITMISP 609

Query: 334 S-FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           S F  +       L    +    ++     + + +    ++ +    S+ +   + +   
Sbjct: 610 SVFKRMGYTPDEVLGQEITRF-FIDENDIRHAMFKLGRNRSLRNFEASMRRKDGSERQFM 668

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSE 445
                  L +            +  ++T       +           +KV+ + + ++S 
Sbjct: 669 F----NMLMLNEGPGSDSVVAVLARDITELKRQSAELVKAKNEAERSLKVKEQFLANMSH 724

Query: 446 GV 447
            +
Sbjct: 725 EI 726



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 27/222 (12%)

Query: 298 EITVNDQLTH--TYEILHNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           E+ V D L      + +  L  V + I +++  L + N     +       +      D 
Sbjct: 24  EVAVTDALPAFDVRQTVDQLNLVGLTI-ERDGTLSYANPYTYRVTAWQPEHIIGQNFFDI 82

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGG 411
            +          E+   +   E+  +     E  + T    +G   +V V S   N   G
Sbjct: 83  FIPPA-------ERAKLEAEFEDALTKGGFPEQKEITLLARSGALRNVQVNSFIINGADG 135

Query: 412 TIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            +  F    E++T +  + +  +       + +D+ S+ + +   DG+    N A+R   
Sbjct: 136 HVSSFTLIGEDVTNKRRVASALSNTNAQLQDLVDNTSDLIQLLTLDGKFIFVNRAWREAL 195

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
                          I+A   R     D  D    ++    +
Sbjct: 196 GYNS---------DEISALNLRDVLHPDYADSTLGLLKRIQE 228



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 64/189 (33%), Gaps = 19/189 (10%)

Query: 132 EKLRKEGQSFDLVAETQNDCA---IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
           +  R   Q+F+L  ET          +   +           + GI  ++          
Sbjct: 521 QAFRGFAQNFELFFETPKGETYLEFHLNPILLAGGVID---EVSGIARDITNRKRAEIAT 577

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF---K 245
                 F+ +F++L  +    D+ G I   + S  K     G    + +G+    F   +
Sbjct: 578 RQSEEKFRGIFENLQDIYARVDRKGRITMISPSVFKRM---GYTPDEVLGQEITRFFIDE 634

Query: 246 EEIKKRMISSSALE--KNFCETVSTLEHGNNK-SYKIVRVLNSFGE----AGIAIDVSKE 298
            +I+  M         +NF  ++   +    +  + ++ +    G     A +A D+++ 
Sbjct: 635 NDIRHAMFKLGRNRSLRNFEASMRRKDGSERQFMFNMLMLNEGPGSDSVVAVLARDITEL 694

Query: 299 ITVNDQLTH 307
              + +L  
Sbjct: 695 KRQSAELVK 703


>gi|254409902|ref|ZP_05023682.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182938|gb|EDX77922.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1258

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 118/761 (15%), Positives = 253/761 (33%), Gaps = 117/761 (15%)

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG--------IYSELAETTL 183
            +L+   Q+ ++    +     +   R   S    R+             +  E+ E   
Sbjct: 46  AQLQAANQALEMEIRDRKQA--EAAVRTLNSQLEQRVNERTKELTQVNQKLEREIKERIQ 103

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI---GES 240
               L      ++ +F+   + ++     G  L AN +  +           +    GE 
Sbjct: 104 VADALLEAEENYRSIFEKAGWGIFQTTPDGQYLSANPALAQIYGYPSPEALISRLTNGEH 163

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--------GIA 292
           +    +  +         + +     S +   +     I     +  +A        G  
Sbjct: 164 QLYVDQSQRAEFKRLIHQQGSVSSFESQVYRQDGSIIWISENTRAVRDANGVLLYYEGSV 223

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLAT 348
            D+S      +QL  + + L  +   +  F    + +      N++  + +   +  L  
Sbjct: 224 EDISDRKQAAEQLQASEQKLRQIIDLVPHFIFAKNLDGQFILVNQAIADAYGTTVEHLLN 283

Query: 349 NPSND-----ELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           +   D     E L  +R    ++ +Q   K   E        +     T  +P     +V
Sbjct: 284 HKDEDFIKSPEQLRRIREEERQIIQQGQPKHIPEERVPDAHGNIRIVQTTRIP----FYV 339

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID--------------------- 441
             ++ P    + +  ++T +  +E +      +     +                     
Sbjct: 340 TGSATP--AILGIAIDITQRKHIEQELRENAAIIRALYEVTTQQNSDFEQKLQNLLTMGR 397

Query: 442 ---HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-CSRYYNESDGW 497
              +L  G+        I   N  +  +     N LS      ++  T C+   +     
Sbjct: 398 RQFNLDVGIL--SHIENIDTENGRYEIIAAQMPNNLSFKGVTLDLKQTYCAEIIHAKKPL 455

Query: 498 DLFAAIITSFDD-------ERKSLQGTLELLSDSV--------LEYSIIPLPNAQT-MLT 541
            + +A  + + +       + ++  G   +++  +        L     P  + +  +L 
Sbjct: 456 CILSASTSQWHNHPGFKVFQVEAYIGVPVIVNGQLYGTLCFVSLTPRQTPFKDIEIELLR 515

Query: 542 FVNVTDSVRAERALTEK-----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +        ER    +      +    A   K+ F+  +S+E+R+P+  +IG T LL  
Sbjct: 516 LMAQWIGGEIERQQAAQELAQARDVALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLD 575

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L S+Q ++V  I  S   LL ++NDILD + +++G ++L   +  L   +     
Sbjct: 576 TQ---LTSQQQEFVTTIRHSGDTLLTIINDILDFSKIESGKLELEEVSFDLQVCIENCLD 632

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----- 710
            +A K  + N+ +      +     + D  RL QI   +LSNA+ F+  G  ++      
Sbjct: 633 LLAAKASDKNLELAYQITPQTPRMIIGDVTRLRQILVNLLSNAVKFTQSGEVIVSVNAEK 692

Query: 711 ---------------------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
                                  A  +    F+VK+ G  IP +    +F  F       
Sbjct: 693 LDYEQWERPETKTSLTPRITPSVATPHYRIQFAVKDTGIGIPPERLNRLFQPFSQVDSST 752

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            R   G GLGL+I +    + GG + + S ++  +T    +
Sbjct: 753 TRKYGGTGLGLAICKQLCEMMGGTMWVESQEDIGSTFYFTL 793


>gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
 gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
          Length = 1331

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 89/384 (23%), Positives = 161/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GGH+++ S +   +T    
Sbjct: 806 LVELMGGHITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|220908654|ref|YP_002483965.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865265|gb|ACL45604.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1433

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 103/513 (20%), Positives = 188/513 (36%), Gaps = 29/513 (5%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSNDE 354
              E+ V         I+ NL   + + D         N++  EL       L      D 
Sbjct: 615  QAELEVRQTQRFLDSIIENLPNMVFVKDAQFLRFVRFNKAGEELLGYVREDLLGKNDYDF 674

Query: 355  L----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
                  +F  S ++  E L      +      ++        H      L+         
Sbjct: 675  FPAQEADFFVSKDR--EVLATGNLLDIAEEQIQTRTGETRLLHTKKIPILNDAGQPQ--- 729

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
              + + E++T     E             ++ +S+ +A +  D    L    F       
Sbjct: 730  YLLGISEDITEYRQAELALRESETRLRLALE-VSQAIA-WERDLEADLVY--FTGAMTLP 785

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                     +  +     R   +       A   +   + R  +    +      ++ S+
Sbjct: 786  VPATLSFAELLGLIHPLDREAFQRAHQTAIANRGSFQIEHRIRVADAAQTWRWYQVQASV 845

Query: 531  IPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            I   N Q +       +++D  +AE  L +  E    A   K  F+  +S+E+R+P+  +
Sbjct: 846  ITDANNQPIRLIGMSFDISDRKQAEAELLQAKETAEAATRAKGDFLATMSHEIRTPMNAV 905

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            IG T LL  +    L+ +Q QY E I  +   LL+++NDILD + +++G + L      L
Sbjct: 906  IGMTGLLLNT---PLSPEQRQYGETIRNAGESLLSVINDILDFSRIESGHLDLEEHPFEL 962

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS 706
               + EV   +A +  E ++ ++V  D  + +  VAD  RL QI   +++NA+ F+ +G 
Sbjct: 963  PHCVAEVIDLLANRAVEKSLHLEVQIDPGVPAVIVADSARLRQILVNLVANALKFTDQGE 1022

Query: 707  T------VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
                   V +          FSV++ G  I     + +F  F        RR  G GLGL
Sbjct: 1023 VMIRVKSVAVSPDGQQQTLEFSVQDTGIGIAPKQLEHLFQPFSQVDSSSTRRYGGSGLGL 1082

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             I +      GG + + S     +T +  +P +
Sbjct: 1083 VISKRLCERMGGQIRVQSRAGVGSTFSFTLPVR 1115


>gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
 gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
          Length = 1331

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|258591257|emb|CBE67554.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 981

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 89/415 (21%), Positives = 157/415 (37%), Gaps = 47/415 (11%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE       ++    +    + V V     RI   N   + L+   E  L  G  +
Sbjct: 558 DRRGLEEALYASRQLFQAVVQSTPDAVIVADGSTRIVACNAGAQRLFGYTEGELQ-GMPV 616

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +     R  +                     +    +  SD  +E S+        + 
Sbjct: 617 MALVPERYRETHRQGLDRFEVTGEARVIGRTIEVDALRKDGSDVPVELSLAGWKTGDRVF 676

Query: 541 TFVNVTDSVRAE--------------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
               + D    +              R L   N+ L  A   K+ F+ ++S+E R+PL +
Sbjct: 677 YSAILHDITERKQYTTHLEQTVQEKTRTLRAANQQLEAASRHKSEFLANMSHEFRTPLNS 736

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIGF+D+L+    G L  KQ+++ + I  S   LL+L+ND+LDL+ V+AG + L+     
Sbjct: 737 IIGFSDILRDPAFGPLTEKQARFAQNIQVSGQHLLSLINDLLDLSKVEAGKIDLHPEPFE 796

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             + +      +  +     + +   +D    + +AD  R  QI   +LSNA+ F+ +G 
Sbjct: 797 CREAIRAALAEVQPQADLKQLELTPQTDEAPSTIIADPVRFKQILLNLLSNAVKFTPEGG 856

Query: 707 TVILKAAR----DNGD-------------------------FIFSVKNNGSSIPEDMCKS 737
            + +   R    + GD                            +V + G  I  D    
Sbjct: 857 RITVTVRRAARQEEGDTSQGAAGQGLEILHSTPHTPHPCDVLEIAVADTGIGIKPDDLPR 916

Query: 738 VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
           +F  F         + +G GLGL++ +  + LHGG ++  S  EG  +T   R+P
Sbjct: 917 LFQEFTRLDAAIAKRTKGTGLGLALTKRLVELHGGEIAAVSDGEGRGSTFTVRLP 971



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 10/153 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  +         ++ +   A+ + D +  +   N     L+      L   P    + E
Sbjct: 563 EEALYASRQLFQAVVQSTPDAVIVADGSTRIVACNAGAQRLFGYTEGELQGMPVMALVPE 622

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGGTIW- 414
             R  ++  + L+          + ++ E         +G  + V ++      G  ++ 
Sbjct: 623 RYRETHR--QGLDRFEVTGEARVIGRTIEVDA---LRKDGSDVPVELSLAGWKTGDRVFY 677

Query: 415 --MFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             +  ++T +    T     V+ +  T+   ++
Sbjct: 678 SAILHDITERKQYTTHLEQTVQEKTRTLRAANQ 710


>gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 587

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 92/389 (23%), Positives = 161/389 (41%), Gaps = 26/389 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + +S+  G     F  ++  +       +         +  ++EGV      G++ L+NP
Sbjct: 219 VASSDEVGQLAHTFNYMSSTLQQTVEDLSHEKSKLENIMLSMNEGVMAIDGQGKVILANP 278

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             RSL K  E  L+            S    + +   LF  +I S +          ++ 
Sbjct: 279 QARSLLKLSETDLT--------GKEISSLLPQEEMNQLFMDVIASSE----VHSAEYQVF 326

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              VL   I PL         V +   V   R L          ++++  FV +VS+ELR
Sbjct: 327 GGKVLSLQIAPLYRNNQTWGAVGILQDVTEVRHL----------EQMRRDFVANVSHELR 376

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+T+I GF + L    L      Q +Y+  I   +  L  LV+D+LDL+ ++ G +   
Sbjct: 377 TPMTSIQGFVEALLDG-LAEDKESQDRYLNVILDETVRLNRLVSDLLDLSRLEKGEVGWP 435

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             TI L  L  +V   +  ++ +  + + + +   + +   +R R+ Q+   +L NA+ F
Sbjct: 436 METIELKPLFADVASKLQPQVAKQELSVDIDTPENISAVTGNRDRIQQVLINLLGNAISF 495

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           +  G  + L A          V + G  IP +    ++ RF  V  A      G GLGLS
Sbjct: 496 TPPGGKITLSAKDVGDKVEVQVTDTGMGIPPEEQDKIWERFHKVDKARTRSFGGTGLGLS 555

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           IV+  ++ HGG V + S+    +T    +
Sbjct: 556 IVKQIVDAHGGDVGLESTPGKGSTFYFTL 584



 Score = 44.9 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 29/165 (17%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             ++ + +    I+ ++   +   D    +   N     L ++    L            
Sbjct: 244 EDLSHEKSKLENIMLSMNEGVMAIDGQGKVILANPQARSLLKLSETDLTGK--------- 294

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GTIW 414
              ++ LP++       +    V  SSE H   + +  G+ L + +    R     G + 
Sbjct: 295 -EISSLLPQEEM----NQLFMDVIASSEVHSAEYQVFGGKVLSLQIAPLYRNNQTWGAVG 349

Query: 415 MFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVA 448
           + +++T    LE            +  T +      ++ L +G+A
Sbjct: 350 ILQDVTEVRHLEQMRRDFVANVSHELRTPMTSIQGFVEALLDGLA 394


>gi|170076780|ref|YP_001733418.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169884449|gb|ACA98162.1| two-component hybrid sensor and regulator; PAS domain S-box protein
           [Synechococcus sp. PCC 7002]
          Length = 1076

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 130/703 (18%), Positives = 266/703 (37%), Gaps = 63/703 (8%)

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
            A +++    Q F    +      +  +GR  G     R+  L        E     +  
Sbjct: 93  AALDQIESLCQYFAEQ-QLAWLTLVDEQGRPVGILPGDRLAEL--RQHLDPEPAAAPEYS 149

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEE 247
            + +  F+ + ++     W  D   +I + + S+K+     +  +  +     + +F E+
Sbjct: 150 HHELKFFEEILENAFAGYWDWDCINNIEYLSPSFKRMFGYADHELPNRPESWQKLIFPED 209

Query: 248 IKK-----RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--------GIAID 294
           ++K     +   +S  E  FC  V       +  + +        +A        G  ID
Sbjct: 210 LQKVNHNLQQHIASHGEIPFCNEVRYRHRDGSTVWVLCSGKVIEWDAQGQPLRIIGSHID 269

Query: 295 VSKEITVNDQLTHTYEILHNL----TVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATN 349
           ++      ++L  +   L        +     D     L   +   + ++ +++A     
Sbjct: 270 LTPYKRFEERLKRSEASLQEAQRLAHIGSWEVDLATGRLS-WSPELLRMFGLNMA--QGP 326

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSN 407
           P+ DE    +          + +  K  + +  ++ E++   +   L NGQ  +     +
Sbjct: 327 PTYDEHWALIH-------PDDQERLKRCVETAMRTGESYMVQYRAQLTNGQIFYHEARGS 379

Query: 408 PR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +    G TI  F    ++T +V  E             ++   +GV  +         +
Sbjct: 380 SQKDASGKTIRFFGTALDITERVLAEQALRESELRWQFALEGSGDGVWDWNAQTNRVFFS 439

Query: 461 PAFRSLWKTEE-------NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             ++++    E              H  ++A T        DG       I   +   + 
Sbjct: 440 RQWKAMLGYSEAEIGDTLMEWESRVHPDDLAMTYQAIQAHLDGQTE----IYRSEHRVRC 495

Query: 514 LQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
             G+ + + D   V+E++    P  + + T  ++ D  +AE AL +  EA   A   K+ 
Sbjct: 496 KDGSYKWILDRGKVIEWTPSGEP-LRIIGTHSDIGDRKQAELALIDAKEAAEAAAHAKSM 554

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  IIG  +LL  S+   L ++Q ++     +S+  LL L+NDILD +
Sbjct: 555 FLATMSHEIRTPMNGIIGMLNLLLYSE--GLTTEQQEHAHIALSSAESLLMLLNDILDFS 612

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQI 690
            ++AG ++L      L+       + +A    E  + +     G + GS   D  RL QI
Sbjct: 613 KMEAGKLQLETVDFDLHQFFENFAKLMAFAAQEKGLNLIFDLRGLRHGSIQGDPGRLRQI 672

Query: 691 FSKILSNAMDFSSKGST-VILKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVS--N 745
            + ++SNA+ F+++G   +  +  R      F  SV + G  I  +    +F  F     
Sbjct: 673 LTNLVSNAIKFTNQGEVMIRCQTERVGDRLDFTCSVTDTGIGIAAEKLNDLFEPFTQLEA 732

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +  G GLGL+I +    + GG + + S+    +     +
Sbjct: 733 GTTRRYGGTGLGLAITQRLCQVMGGTIEVISTPGEGSCFTFTL 775


>gi|91201393|emb|CAJ74453.1| similar to ammonium transport protein amtB possibly fused to
           histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 679

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 2/237 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N AL KA+ +K+ F+  +S+ELR+PL  IIGF ++L+    GSL+  Q +YV  I 
Sbjct: 437 LQMANVALEKANRLKSEFLTTMSHELRTPLNAIIGFAEVLRDEIAGSLSKDQKEYVTDIH 496

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL+++N+ILDL+ ++ G M L Y    + D +N+    I    +   I +     
Sbjct: 497 SSGHHLLDMINNILDLSKIETGKMHLQYEEFCIEDAINDTLTIINASANNKGISVHTNIQ 556

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  AD+ +  QI   +LSNA+ F+ +   + +   + +    F + + G  I  + 
Sbjct: 557 DNTPLLSADKTKFRQILYNLLSNAVKFTPENGKITINVFQKDNSLQFEIVDTGIGIKPED 616

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +F  F         +  G GLGL + +  + LHGG +   S+    +T    +P
Sbjct: 617 KEKLFEAFHQADASLTREYEGTGLGLHLTKRLVELHGGKIWAESTFGKGSTFFFILP 673


>gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1336

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 94/404 (23%), Positives = 176/404 (43%), Gaps = 31/404 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQG----ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           F  L  Q ++    N  +  +     + ++ L  GV V+  +G I  +N   + L++ E 
Sbjct: 421 FSELEEQNNISKALNRQLYDREYWLKQFLEALPVGVLVYDKNGNIYYANQKLKDLFRHEH 480

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYS 529
                   + + A   + Y N +D      A+  I +   +   ++       D  +  S
Sbjct: 481 IP---EVSLEDFAGINNLYLNGTDQVYPTKALPLIRALKGKIVPIENIEIRHPDQTICCS 537

Query: 530 I--IPLPNAQ-----TMLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQH 575
           +   P+ ++       +  F ++T   +AE       + L EKN+AL++ DE+K+ F+ +
Sbjct: 538 LMATPIFDSDEAIVYGIAVFEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            S+ELR+PL  +IG ++ +     G L   Q Q +  I+ S   L  LVNDILD + +  
Sbjct: 598 TSHELRTPLNGMIGLSESMLDGVGGPLTELQRQNLSMIAKSGHRLSTLVNDILDFSKLRH 657

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             ++L    + L +++  +       +   +I +         +  AD  RL QI   ++
Sbjct: 658 QTLELKLQPLGLREIVEVIVVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLI 717

Query: 696 SNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
            NA+ F+  G TV + A+  + +      + ++ + G  IP D    +F  F        
Sbjct: 718 GNAIKFTDSG-TVKITASVLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTA 776

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            Q  G GLGL+I +  + LH G + + S  +  +T +  +P  E
Sbjct: 777 RQYGGTGLGLAITKQLVELHQGKIWLDSVVDSGSTFSFTLPISE 820


>gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 597

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 92/418 (22%), Positives = 172/418 (41%), Gaps = 27/418 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  +            +      I+T++  GG    F  +  ++       N   + 
Sbjct: 199 RITAPLRKMRQAAFEMARGHFDMKVPILTNDEIGGLAMAFNQMGRRLQFNINALNQEKEQ 258

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  DG I ++NP        +      G     +A           
Sbjct: 259 LASILSSMADGVITFNRDGEILITNPPAERF--LQAWYFEQGNDAEAMAPL------PPQ 310

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +LFA ++   +++ +S + TL+  +  +L   + PL     +   V V   +  ER L
Sbjct: 311 VKELFARVVR--EEKEQSTEVTLQGRTWVIL---MTPLYGKTMVRGAVAVLRDMTEERRL 365

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+++  F+ +VS+ELR+P+  + G+++ +      S   K  +  + I  
Sbjct: 366 ----------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEKEK-KEMAKVIYD 414

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  LVND+LDLA ++AG ++L Y  + L   +  V +       E  I +      
Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  R+ Q+ + ++ NA+  +  G TV L            V+++GS IPE+  
Sbjct: 475 RDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDL 534

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             VF RF        R   G GLGL+I ++ +  H G +++ S     TT +  +P++
Sbjct: 535 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLPAR 592



 Score = 37.6 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 83/270 (30%), Gaps = 40/270 (14%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +N +      IL ++   +  F+++  +   N            FL       E     
Sbjct: 251 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAER-------FLQA--WYFEQGNDA 301

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWM 415
            +   LP Q+      + +F+     E  + T     G+T  +++T         G + +
Sbjct: 302 EAMAPLPPQV------KELFARVVREEKEQSTEVTLQGRTWVILMTPLYGKTMVRGAVAV 355

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             ++T +  L+            +  T + +     + + + +A    + +        +
Sbjct: 356 LRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEKEKK-----EMAK 410

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRY----YNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            ++            + ++A   + +    Y +         +I  F    K  Q  L  
Sbjct: 411 VIYDESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTA 470

Query: 521 -LSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              D  +E ++ P    Q +   ++     
Sbjct: 471 EFRDRDIEIALDPDRIEQVLTNLIDNAIRH 500


>gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 618

 Score =  309 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 139/280 (49%), Gaps = 12/280 (4%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQ 574
            +E L+D+++E       +A  +       +    ER   L         A+  K+ F+ 
Sbjct: 341 EMESLNDALIE-------SANRLKELYQSLEQKVKERTAELEIAKIHAEAANRAKSEFLA 393

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+ELR+PL +IIGFT++L+    G+LN KQ +Y++ I  S+  LLNL+NDILDL+ ++
Sbjct: 394 NMSHELRTPLNSIIGFTEVLQDQLFGTLNEKQLEYLKDIHDSAKHLLNLINDILDLSKIE 453

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSK 693
            G  +L  S   ++D++N        K  ++ I++      +   +  AD +++ Q+   
Sbjct: 454 EGKTELELSEFRVSDVVNVSLIMFKEKASKHGIKLDAEISKEADITVTADERKIKQVLFN 513

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQR 751
           ++SNA+ F+  G +V + A R        V++ G  I ++    +F  F         + 
Sbjct: 514 LVSNAVKFTPDGGSVKITAERKEDMIEIVVEDTGIGIKKEDRDKLFQPFSQLETTYTKKY 573

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +G GLGL++ +S + LHGG +   S     +      P K
Sbjct: 574 QGTGLGLALSKSLVELHGGKIWCESEYGKGSRFGFSFPVK 613


>gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134]
 gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134]
          Length = 1290

 Score =  309 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 123/677 (18%), Positives = 250/677 (36%), Gaps = 72/677 (10%)

Query: 173  GIYSELAETTLKCKKLSNH---ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            G+   + +  +   KL +    +S FK+  D    +    D  G+I +AN ++       
Sbjct: 471  GVMQNITQRKVDEHKLKSSHKTLSDFKMALDEATIVA-TIDLQGNITYANDNFA---TIS 526

Query: 230  GIVFQKAIGESRKLF---KEEIKKRMISSSALEKNFCETVSTL-EHGNNKSYKIV----- 280
            G    +  G    +    K+ +    +++    K +    + + + G     K       
Sbjct: 527  GYATHELTGRHYDVLIPKKQALSSEALNTVQSGKVWQGETNNVHKSGKQYWLKTTIIPFL 586

Query: 281  -RVLNSFGEAGIAIDVSKEITVND--------------QLTHTYEILHNLTVAIAIFD-- 323
                  F    I +D++      +              +L  T E L        +F   
Sbjct: 587  NDRKLPFQYMIICMDITDHKKAEETVKLQYLQIEMQNQELQATNEELRQTNE--VLFSTM 644

Query: 324  -----QNRYLQFHN-RSFVELWEIDL------------AFLATNPSNDELLEFLRSANKL 365
                   + L      + + +W+ DL                  P +          +  
Sbjct: 645  EQLRESEQRLSLATLSAKMGIWDWDLLNNHLVWDKQMFELYGCKPGDFPNAYDAWEKHLH 704

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH------VIVTSNPR-GGTIWMFEN 418
            P+          +    K+    +     PNG   H      V+   + +    I +  +
Sbjct: 705  PDDKKQVYLDSLLAREGKAEYNTEFRVCHPNGNIRHIKGFGKVVFDDHAQPVRMIGINWD 764

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            +T Q   E       ++  + +D L   + +   +GR+   N A    ++  +  L   T
Sbjct: 765  ITTQKRAEEDLTNQKRILEQILDTLPINIYIKDDEGRLMFLNKATCQTYRITKEILGK-T 823

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                     +  + + D          +++++       ++LL    L  S         
Sbjct: 824  DAEIFPEYLAEAFVKDDMLVRAGTKPGTWEEQISWQHLNIDLLVGKKL-ISFEKNKAPYI 882

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +   +++T   R ER L    +   +A   K  F+  +S+E+R+P+  +IG T +L  +K
Sbjct: 883  LGYSLDITARKRFERELITAKQKAEEAALAKEQFLSTMSHEIRTPMNAVIGMTHVLLENK 942

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                   Q + ++ +  S+  LL+L+NDILD   +DAG ++       L +L+  +++S 
Sbjct: 943  ---PRVDQLENLKILKFSAQTLLSLINDILDFTKIDAGKVEFEEVLFDLPELIESIQKSF 999

Query: 659  ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
            A    E NI++K  +D  +    + D  RL Q+ + +++NA+ F+ KG   ++L+    N
Sbjct: 1000 AFTAQEKNIQLKFSTDTNIPHKVIGDPVRLTQVLTNLMNNAIKFTLKGEVKLMLQLITQN 1059

Query: 717  G---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
                   F+VK+ G  IP++  + +F+RF         +  G GLGL+IV+  + L    
Sbjct: 1060 NRQVQLRFTVKDTGVGIPKEKQQIIFDRFTQANPETIRKFGGTGLGLAIVKRLLELQDSQ 1119

Query: 772  VSISSSDEGVTTINCRI 788
            + + S +         +
Sbjct: 1120 IHLESEENKGAKFYFDL 1136



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/459 (14%), Positives = 158/459 (34%), Gaps = 46/459 (10%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +L L     +        K+L  ++ ++++L ++   L+   D+   +++ + S ++   
Sbjct: 211 LLLLSKNAEQKEALKNTQKELKKNVILYQILTENSSDLIERFDRNHQLIYTSPSIERILG 270

Query: 228 TEGIVFQKAIGESRKLFKEE--IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                 +K          +   + +++  ++A ++ +   V    H       +  V N+
Sbjct: 271 YTLQERKKIKLTQIAHPDDAHWLLQKIQENTAKQQKYSTYVFRARHKQGHYIWLEVVANA 330

Query: 286 F--------GEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNR 333
           F        G    A DVS+ +    +L    E      +   + I  +         + 
Sbjct: 331 FFDSNGQYEGAISSARDVSERMEAEKKLQANEERFRLAQNFANIGIWEWTPTNNEMLWSP 390

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
               L  +        PS +  ++ +   +   + +     + ++ +V K    H+  W 
Sbjct: 391 QTNYLLGLYHQ--VGKPSFEVFMKAVHPDD---QAMVQAKMQHSVNTVKKYELEHRVVWQ 445

Query: 394 LPNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             +G    V    N +          + + +N+T +   E K  +  K   +    L E 
Sbjct: 446 --DGTIYWVKSQGNVQRDQYGNVMKMLGVMQNITQRKVDEHKLKSSHKTLSDFKMALDEA 503

Query: 447 --VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
             VA     G I  +N  F ++     + L+ G H   +        +E+         +
Sbjct: 504 TIVATIDLQGNITYANDNFATISGYATHELT-GRHYDVLIPKKQALSSEALNT------V 556

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKN 559
            S    +       +      L+ +IIP  N      Q M+  +++TD  +AE  +  + 
Sbjct: 557 QSGKVWQGETNNVHKSGKQYWLKTTIIPFLNDRKLPFQYMIICMDITDHKKAEETVKLQY 616

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
             +   ++     +Q  + ELR     +    + L+ S+
Sbjct: 617 LQIEMQNQE----LQATNEELRQTNEVLFSTMEQLRESE 651


>gi|154251412|ref|YP_001412236.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155362|gb|ABS62579.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 600

 Score =  309 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 106/545 (19%), Positives = 212/545 (38%), Gaps = 72/545 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E  + +               I  +D      + + +  ++  +       +P+  + 
Sbjct: 74  EAEAALVENQHRFDMAFAGARCGIWDWDLGENRIYWSSAMFDMVGLKQPSKRLSPNEIKA 133

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPRGG-- 411
           +     A  + E  N  +         + S ++   + L   +G  + +       GG  
Sbjct: 134 MAHPDDAGAIDEIANAAS---------RPSRSYDTAFRLRHADGSWVWMHAKGQVWGGGR 184

Query: 412 -----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 + +  ++T Q   E + +   +   + I+ + E   ++  +GR+  +N  F   
Sbjct: 185 AAGERLVGITIDITDQKIAEERVHEANERLRDAIESVGEAFVLWDAEGRLATANSKFGEF 244

Query: 467 WKTEENRLSPGTHIRNI---AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               E+ + PG     +   A     +    DG +  A +              + L + 
Sbjct: 245 LNLGEDYMHPGAPRGEMMQRAGVGDAWPVSQDGGEAGAGV------------HEIRLPTG 292

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------ 565
             L+ S     +   +    ++T     E ALT+   AL K                   
Sbjct: 293 RWLQISERRTKSGGHVNVGTDITAIKEQEAALTDNKVALEKTVRDLETSRRKLQEQARQL 352

Query: 566 -----------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
                            +  K+ F+ ++S+ELR+PL  IIGF++++++   G L + K  
Sbjct: 353 VDLAEKYASEKTRAEAANRSKSEFLANMSHELRTPLNAIIGFSEIMESGLFGELGSPKYK 412

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   I AS T LL L+NDILD++ ++AG M L    + L++++ E  + ++ +     +
Sbjct: 413 EYAGDIHASGTHLLELINDILDMSKIEAGRMTLETQPLELSEVVEESLRLVSGRAEVAKV 472

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            I     G L +  AD++ + Q+   +LSNA+ F+  G ++ L+          SV++ G
Sbjct: 473 HIANEM-GPLPTVDADKRAVKQVLLNLLSNAVKFTPAGGSIHLRGETSGRFVTISVEDTG 531

Query: 728 SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +   F      H    +G GLGL++  S + LHGG + + S++   T ++
Sbjct: 532 IGIPASALPKIGRPFEQVESQHSKSHKGTGLGLALSRSLVELHGGALVLESTEGVGTKVS 591

Query: 786 CRIPS 790
             +P 
Sbjct: 592 FTLPL 596



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 96/313 (30%), Gaps = 17/313 (5%)

Query: 13  GIEICTLFSCKIAVFGTIAG---MLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQL 69
           G+    LF+  +A++    G   +L ++++    L      +  + ++  +  + + +Q 
Sbjct: 25  GLSGVALFALNVALYSEEGGSRTLLFSSLLSGGYLALAYMLVRLRESKLEAEAALVENQH 84

Query: 70  SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL--SFENWLKFHHYIKL 127
            ++        C    WD  +        +   + + Q    L     +          +
Sbjct: 85  -RFDMAFAGARCGIWDWDLGENRIYWSSAMFDMVGLKQPSKRLSPNEIKAMAHPDDAGAI 143

Query: 128 SK----ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGS--CAFLRILSLDGIYSELAET 181
            +    A+   R    +F L     +   +  +G+V G    A  R++   GI  ++ + 
Sbjct: 144 DEIANAASRPSRSYDTAFRLRHADGSWVWMHAKGQVWGGGRAAGERLV---GITIDITDQ 200

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            +  +++       +   +S+       D  G +  AN  + +                 
Sbjct: 201 KIAEERVHEANERLRDAIESVGEAFVLWDAEGRLATANSKFGEFLNLGEDYMHPGAPRG- 259

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEIT 300
           ++ +          S         V  +     +  +I  R   S G   +  D++    
Sbjct: 260 EMMQRAGVGDAWPVSQDGGEAGAGVHEIRLPTGRWLQISERRTKSGGHVNVGTDITAIKE 319

Query: 301 VNDQLTHTYEILH 313
               LT     L 
Sbjct: 320 QEAALTDNKVALE 332


>gi|311747357|ref|ZP_07721142.1| sensory box sensor histidine kinase/response regulator
           [Algoriphagus sp. PR1]
 gi|311302642|gb|EAZ83239.2| sensory box sensor histidine kinase/response regulator
           [Algoriphagus sp. PR1]
          Length = 938

 Score =  309 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 109/494 (22%), Positives = 211/494 (42%), Gaps = 42/494 (8%)

Query: 321 IFDQNRYLQ--------FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
           +FDQ   L         FHN +       D             L+     +   +Q +  
Sbjct: 302 LFDQQNILLKELKGFVYFHNSAGKITRVSDEVEEILGIPKSIFLDAFAPDS---QQADVV 358

Query: 373 TWKENIFSVYKSSETHKDTWH---LPNGQTLHVIVTS----NPRG---GTIWMFENLTVQ 422
             +E ++ V  SS++H +  +    P+G+ + V V      +  G   G + +  ++T Q
Sbjct: 359 KIREKVYEVLGSSKSHIEFEYDFVRPDGKEIRVKVFEKLIFHKNGKFNGGLGICTDITSQ 418

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            +   K           ++++ + + ++  DG +  S+     +   +++ L  G +I  
Sbjct: 419 FESSQKLIQSENRLRVVMENIPDVIFIYDNDGNVIDSHVK-EQIPGWDKSSL--GKNISV 475

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQTMLT 541
           +     R         + A  +     E +++   L L S +   E    PL   + M  
Sbjct: 476 LLPPDQR------DETIHAFQLARKYGEIQTVDRRLNLPSGAKYFEIRYFPLDENRMMSL 529

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +VT+    E+ L E  +A  +A   K+ F+ ++S+E+R+P+  ++G  DLL  +   +
Sbjct: 530 AKDVTNQKVWEKGLIEAMKAADEASRAKSEFLANMSHEIRTPMNGLLGIIDLLDHT---N 586

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +QSQY+E I  S + LL+++ DILD + ++AG M LN +     + L +  Q     
Sbjct: 587 LDEEQSQYLEIIKNSGSSLLSIIKDILDYSKIEAGKMDLNPTLGNPAEELEKQIQIFYGL 646

Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---- 716
             E +I +K        G F  D  R+ Q+   ++ NA+ F+ +   V +    +     
Sbjct: 647 AQEKSITLKTDIGKAAYGLFETDFDRINQVILNLVGNALKFTPQNGQVTVSMDAEQIENE 706

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  VK++G  IPE    S+ + F    ++     +G GLGL+I +  + L GG ++
Sbjct: 707 LHYLKIQVKDSGIGIPEKHIPSLTDPFFQVESSSTRSYQGTGLGLAIAKKIVELMGGELN 766

Query: 774 ISSSDEGVTTINCR 787
           I+S+    +  +  
Sbjct: 767 INSTVGEGSEFSFS 780


>gi|254415827|ref|ZP_05029584.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177254|gb|EDX72261.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1218

 Score =  309 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 107/640 (16%), Positives = 242/640 (37%), Gaps = 46/640 (7%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
            +  E+AE      +L   ++  +   + +       +  G+  + N ++ +    +    
Sbjct: 598  LQHEIAERQQVEIQLRQKLAAIEATTEGIA----ILNAKGEYTYLNPAHVQLFGYD--TS 651

Query: 234  QKAIGES-RKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
            +  +G+S R L+  E   R                 E V+  ++G+  + ++   L   G
Sbjct: 652  EALLGKSWRHLYPPEEITRFERDIFTILQQQGYWRGEAVALRQNGSKFAEEVSLTLTPEG 711

Query: 288  E-AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
                I  D+++       L  + E        +TV I     +      N++F ++    
Sbjct: 712  NFICICRDITQRQQTEAALRTSEERFRSTFEQVTVGITHTGWDDRFLRVNQTFCDIVGYT 771

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
            +  L T       ++     +   +    K +   + +    + + +  +   +G  + V
Sbjct: 772  VDELLTK----TFVDITHPDDVDGD----KYYVNQLLAGEIKTFSMEKRYIRKDGSIVWV 823

Query: 403  IVTSN-------PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDG 454
             +  +            + + E++  +   E       +   +  +++ E   +      
Sbjct: 824  NLRGSLVRKSTGELDYFVGVIEDIRDRKRTEAALQESEQRFRQLAENIHEVFWITDVAKS 883

Query: 455  RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            ++   +PA++ +W            I +   +     +  D   + AA       E    
Sbjct: 884  QMIYVSPAYQQIWG------RSCQSIYDNPLSFVETIHPEDRERVMAAFAKQARGEYHED 937

Query: 515  QGTLELLSD-SVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
               ++   +   +     P+ +      + +    ++T+  +AE+ + +     ++ +E+
Sbjct: 938  YRIIQPGGEQRWIRDRAFPVYDTSGQVYRIVGIAEDITEYKQAEQEIRQALAREQELNEL 997

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+   S+E R+PLT I+  T+LLK         K+  + E I ++   +  ++NDIL
Sbjct: 998  KSRFISMTSHEFRTPLTTILSSTELLKYYSSKFTEEKKQIHFERIQSNVHHITQMLNDIL 1057

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
             L   +AG +  N + + +     ++ +     +   +  +     G+L     D + L 
Sbjct: 1058 LLGKAEAGKLDFNPAQMDVRQFCQQLVEEFQQGIGHRH-SLCFTHQGQLTPVSLDEKLLR 1116

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             I   +LSNA+ +S     V L+    + + IF +K+ G  I E   + +F  F    + 
Sbjct: 1117 HILGNLLSNALKYSPIDRPVCLELTCRHNELIFRIKDQGIGISETDQQRLFESFHRGTNV 1176

Query: 749  GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G   G GLGLSIV+  ++ HGG +++ S     TT    I
Sbjct: 1177 GNISGTGLGLSIVKKAVDRHGGTINLESKLGVGTTFTVVI 1216



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 48/157 (30%), Gaps = 10/157 (6%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETE 229
             G+  ++ +       L      F+ L +++  + W  D     +++ + +Y++     
Sbjct: 840 FVGVIEDIRDRKRTEAALQESEQRFRQLAENIHEVFWITDVAKSQMIYVSPAYQQIWGRS 899

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET---VSTLEHGNNKS-----YKIVR 281
                       +    E ++R++++ A +               G  +      + +  
Sbjct: 900 CQSIYDNPLSFVETIHPEDRERVMAAFAKQARGEYHEDYRIIQPGGEQRWIRDRAFPVYD 959

Query: 282 VLNSFG-EAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
                    GIA D+++      ++         L  
Sbjct: 960 TSGQVYRIVGIAEDITEYKQAEQEIRQALAREQELNE 996


>gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1425

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 96/518 (18%), Positives = 206/518 (39%), Gaps = 43/518 (8%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             E  +N+QLT    +L++L   + + D+ + +   N+++ + +  +L        + + L
Sbjct: 554  AEHKLNEQLTFVQTLLNSLPNMVVLRDREQRITLCNQAYRDAFIGELTQ-----DDGDDL 608

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------ 410
            + + +  +           ++   +  +  + +      +G   HVI T  P        
Sbjct: 609  DRMPARERERVLREESGVWQSGEQLEGAGNSRRQ-----DGAMFHVIYTKRPYRSPKGDM 663

Query: 411  -GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV----FGP-DGRIKLSNPAFR 464
             G + +  ++T   + E +         +  D +  G+       GP  GR   ++    
Sbjct: 664  LGVLTVLTDVTRIKEAEARARKAETRLTQITDSMP-GIVYQYLWLGPGKGRFLYASQGAS 722

Query: 465  SLWKTEENRLSPGTHIRNIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLE 519
             +       +        +         +     ++  +  A +      ER      L+
Sbjct: 723  EILGASRQEILSAESGGEVFGFTEEALQDFVSKVANHAETLAPLDLEVRVERPEGARYLQ 782

Query: 520  LLSDSVLEYSIIPLPNAQTM--LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            +        S +P      +      ++T     E  L E      +A ++++ F+  +S
Sbjct: 783  VRG------SFVPQEEGHLILNGVIQDITALKHQEHDLREARAYAEQAMQVRSRFLATMS 836

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +ELR+P++ + G  +LL+ S+   LN  Q   +  +  S+  LL LVND+LD + ++AG 
Sbjct: 837  HELRTPISGMHGMLELLQMSE---LNDDQRYLLRNVVTSTNNLLYLVNDVLDFSKIEAGQ 893

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
            ++L+Y    L  ++ +V +  AT  H   +++ +    ++      D  R+ Q+ S +L+
Sbjct: 894  LQLHYQDCRLASVICDVIRGHATLAHGKGLKVTLEWAPEVPDQARIDAVRVGQVLSNLLN 953

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGV 754
            NA+ F+ +G  + ++ + +      +V + G  I ED    +F  F    +    +  G 
Sbjct: 954  NAVKFTERGE-IRIQVSFEKERLAIAVSDTGIGIAEDKQDRLFTPFEQVESDITRRFGGT 1012

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGL+I        GG + + S     T +    P  E
Sbjct: 1013 GLGLAICHQLAQKMGGTLVLESKPGHGTRLTFDFPLAE 1050



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 86/292 (29%), Gaps = 35/292 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +  L   KL+  ++  + L +SL  +V  RD+   I   N +Y+     E    
Sbjct: 544 LRRQIVQRKLAEHKLNEQLTFVQTLLNSLPNMVVLRDREQRITLCNQAYRDAFIGELTQ- 602

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-----SYKIVRVLNSF-- 286
                +   L +   ++R          +         GN++      + ++     +  
Sbjct: 603 ----DDGDDLDRMPARERERVLREESGVWQSGEQLEGAGNSRRQDGAMFHVIYTKRPYRS 658

Query: 287 ------GEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHN 332
                 G   +  DV+     E       T   +I  ++   +  +           + +
Sbjct: 659 PKGDMLGVLTVLTDVTRIKEAEARARKAETRLTQITDSMPGIVYQYLWLGPGKGRFLYAS 718

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           +   E+       + +  S  E+  F   A +     ++ +   N        +      
Sbjct: 719 QGASEILGASRQEILSAESGGEVFGFTEEALQ-----DFVSKVANHAETLAPLDLEVRVE 773

Query: 393 HLPNGQTLHVIVT--SNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETI 440
                + L V  +      G  I   + +++T     E           + +
Sbjct: 774 RPEGARYLQVRGSFVPQEEGHLILNGVIQDITALKHQEHDLREARAYAEQAM 825


>gi|167621591|ref|YP_001672099.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351714|gb|ABZ74440.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 903

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 112/523 (21%), Positives = 187/523 (35%), Gaps = 35/523 (6%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G+A+D     + N  L    E L  +   +A +D N  L   N  + +L     A L   
Sbjct: 238 GVALDA---ASRNGNLRRLREALDVMPEGLAFYDANDRLVAWNTQYDDLCRTSGAILVAG 294

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +LLE        PE +  +T      +  +  E    T     G+ L +       
Sbjct: 295 MPFSDLLESSLVHGVYPEAVGRETEWLAERNAARRDEAPSLTQQTAGGRWLRITERRTGD 354

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETI--DHLSEGVAV-----FGPDGRIKLSNPA 462
           GGT+ +  ++T     E           E      ++EGVA           R    +  
Sbjct: 355 GGTVSVSVDITDLKRTEAAMAQARDKAEEQARRAEVAEGVAGLGNWRVDARTRDVTWSTQ 414

Query: 463 FRSLWKTEEN---------RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
              ++    +          +        +AA   R     +  +   + I   + E + 
Sbjct: 415 MYHIFGLASDAPLDLEALIGMIHPDDAEAVAARLKRQLATGEVDENSISRIVRANGEVRY 474

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L            E   +       + T V+VTD    E  L         A  +K  F+
Sbjct: 475 LARNSRAEHGPGGEVIAM-------IGTMVDVTDQKLLEARLRLARAEAEAAAGVKAEFL 527

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PLT+IIGFT L        L      YVE +  +S  LL  VNDILD + +
Sbjct: 528 ANMSHELRTPLTSIIGFTSLAAEQ--SDLTDLTRTYVERVGDASRALLCTVNDILDFSKL 585

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIF 691
           +AG +        L  L          +    ++ + +  +          D  R+ QI 
Sbjct: 586 EAGQVSFQVQPASLAKLSRATLDLFTPQAGAKDLNLTLDGEAADDDLIIAVDPDRIRQIL 645

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             ++ NA+ F++ G +V L+   D    + S  V + G  +  D    +F RF       
Sbjct: 646 LNLVGNAVKFTT-GGSVTLRTRYDRAAEVLSVDVIDTGEGVAPDKQDRLFKRFSQVDGSL 704

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            R   G GLGL+I +  +   GG + + S     +    ++P+
Sbjct: 705 TRVQGGTGLGLAICKGLVEAMGGEIGVESRMGEGSRFWFKVPA 747



 Score = 38.4 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 81/276 (29%), Gaps = 44/276 (15%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
             L     + ++   +   D +   +   D    ++  N  Y     T G +    +  S
Sbjct: 239 VALDAASRNGNLRRLREALDVMPEGLAFYDANDRLVAWNTQYDDLCRTSGAILVAGMPFS 298

Query: 241 RKL--------FKEEIKKR---MISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGE 288
             L        + E + +    +   +A  ++   +++    G  +  +I  R     G 
Sbjct: 299 DLLESSLVHGVYPEAVGRETEWLAERNAARRDEAPSLTQQTAG-GRWLRITERRTGDGGT 357

Query: 289 AGIAIDVSKEITVNDQLTHTYEILH------NLTVAIA-----IFDQNRYLQFHNRSFVE 337
             +++D++        +    +          +   +A       D        +     
Sbjct: 358 VSVSVDITDLKRTEAAMAQARDKAEEQARRAEVAEGVAGLGNWRVDARTRDVTWSTQMYH 417

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH---L 394
           ++ +         ++D  L+ L +   +    + +     +     + E  +++      
Sbjct: 418 IFGL---------ASDAPLD-LEALIGMIHPDDAEAVAARLKRQLATGEVDENSISRIVR 467

Query: 395 PNGQTLHVIVTSNPRGG-------TIWMFENLTVQV 423
            NG+  ++   S    G        I    ++T Q 
Sbjct: 468 ANGEVRYLARNSRAEHGPGGEVIAMIGTMVDVTDQK 503


>gi|302382006|ref|YP_003817829.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192634|gb|ADL00206.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 792

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 133/845 (15%), Positives = 279/845 (33%), Gaps = 134/845 (15%)

Query: 4   GMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETY--SF 61
           G        G+        ++ V     G+ +     +++  R+    A++       + 
Sbjct: 12  GRRAADRPDGLPAWA----RVLVLALTLGLAIY----VLMFARESTRPAREATLLREQAL 63

Query: 62  LSEICDQLSKYHSLLT-ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL---SFEN 117
           ++E     ++  + +      L +V       PE      +       +T  L   +   
Sbjct: 64  VTEAELAAARLDAAIGRAQLGLDVVAGRLAGAPERSLDAVEAGRAVAPETAFLVTAADGT 123

Query: 118 WLKFHHYIKLSKATEK---LRKEGQSFDLVAE------TQNDCAIKIEGRVSGSCAFLRI 168
            L            +    LR+      +V        + N   +  +GRV G    L+ 
Sbjct: 124 RLASKGAAAEDFVVDNRGILRQRAVGGQIVIARTALPASDNVLVVGPDGRVLGMTTTLK- 182

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
                     A   ++ + L    +               R     +  A  +  +    
Sbjct: 183 ----------ARLGVEPRALVGTETPLAG-----------RIADKRVTAAGAAVGETGLV 221

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
                 ++ G +  +    +    I    L           +   ++ +           
Sbjct: 222 AVAWRPQSTGAAALISDLWLIMAPIGLGVLVLGLALMQGWRQSRASRVW----------- 270

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
                         +        +      +  +D +R     +     L  +       
Sbjct: 271 -------------AESEHRFRVAVEAARCGVWEWDLDRETVDVSDYMAALLGLPT---GG 314

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS 406
           + ++  ++E +           ++   E+      +    + T+ +P   G    +    
Sbjct: 315 SVTSAAVIERIHPR--------YRDLVEHALRQAATFGAFEVTFAVPLEGGGARWIDARG 366

Query: 407 NPRGG--------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
             RG          + +  ++T       +         + I+ +S+   +F   GR+ L
Sbjct: 367 QARGRRGDDGYGMILGVAMDITEARRARAQLQAAEGRLRDGIESVSDAFVLFDKHGRLIL 426

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N AF+  +   +  +  G     +    +            A        E ++    +
Sbjct: 427 WNQAFKDAFGFADEAVRKGAQKDELNRIAA-----------LAIKADRPSPEGRAGAREV 475

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------- 565
           EL    VL+ +     +  T++T  +VT   R E       ++LRK              
Sbjct: 476 ELYDGRVLQLAERFTGDGGTVITAADVTAIRRQEVERQRSADSLRKTVDELEASQEKLSL 535

Query: 566 ---------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
                          ++ K+ F+ ++S+ELR+PL  I GF++++     G L + K   Y
Sbjct: 536 LARKYEIAMTRAEAANQAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHEKYKGY 595

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S   LL+L+NDILD+A ++AG M L+Y  + L +L  +  + +  K  +  + +
Sbjct: 596 AHDILKSGQHLLSLINDILDMAKIEAGKMTLHYEAVSLTELCEDAIRLMRGKAQDCGLTL 655

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGS 728
            + + G +    AD + L Q+   ++SNA+ F+ +G  + +   R N      +V + G 
Sbjct: 656 SLEA-GDVPEIEADYRGLKQVMLNLISNAVKFTPEGGEITVSVTRQNAVTMRIAVTDTGI 714

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I       +   F      H    +G GLGL++ +S I LHGG +++ S     TT++ 
Sbjct: 715 GIAAADLARLAQPFEQVEGQHSKTTQGTGLGLALTKSLIELHGGEMTMVSEPGEGTTVSF 774

Query: 787 RIPSK 791
            IP +
Sbjct: 775 DIPIR 779


>gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
 gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
          Length = 1331

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 84/382 (21%), Positives = 156/382 (40%), Gaps = 10/382 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +           +++       G    +      +S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAAHHVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRA 570

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G   
Sbjct: 571 DKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+
Sbjct: 631 LALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLD 687

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV--- 708
            V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V   
Sbjct: 688 NVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSA 747

Query: 709 -ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
            + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI +  +
Sbjct: 748 RVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLV 807

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
            L GG +++ S +   +T    
Sbjct: 808 ELMGGQITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHHVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1097

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 129/752 (17%), Positives = 249/752 (33%), Gaps = 84/752 (11%)

Query: 97  GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFD--------LVAETQ 148
           G     +      +DL+ F ++      +    A    R+    F          +    
Sbjct: 71  GDWPADLGWLHIISDLIIFGSYFAIPSALLFFAA----RRNDLPFHRLFLLFAAFILACG 126

Query: 149 NDCAIKIEG------RVSG-------------SCAFLRILSLDGIYSELAETTLKCKKLS 189
               ++         R++G             +   +R +         A    +   L 
Sbjct: 127 FGHLLEAIIFWWPAYRLAGLLKAITAAVSLATAIVLVRFMPKILEAPSNAVLAEE---LK 183

Query: 190 NHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFK--- 245
             +        +    VW    Q   + W     ++  +   +  ++   +    F    
Sbjct: 184 ETVQRLNCAAAAAQMGVWEWSIQDNCLRWD----EQLAQMFDLQPERNPTQLETFFDHLH 239

Query: 246 ----EEIKKRMISSSALEKNFCETVST-LEHGNNKSYKIV------RVLNSFGEAGIAID 294
                 I+  +  + +    +       L+ G  +                    G+ +D
Sbjct: 240 DDDRSSIEAAIKKTVSDGSPYDARYRIFLDSGELRHIAAHGQLVYDDNNEPERLIGVCVD 299

Query: 295 VSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            ++E    D L  + E          + IA    +      N+   ++       L    
Sbjct: 300 RTREQQHEDALAASEERYRATFEQAAMGIAHVGPDGSWLRVNQGLCDIVGYTAEELMA-- 357

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSN 407
                L F    +      + +  ++ +    K     K   H         L V +  +
Sbjct: 358 -----LSFQDITHPDDLTADLELVQQILAGELKRYSLEKRYVHKAGHTVWINLTVSLIQH 412

Query: 408 PRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             G     I + E++  +   E     +     +       G+     DG ++  N   R
Sbjct: 413 ADGSPNYFISVVEDIQERKQAELALRRMTHQFEQLFSSELLGIMTCRLDGAVEQMNTELR 472

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSD 523
            L    E+      + R + A     ++E+             ++ E     GT   +  
Sbjct: 473 RLLSLSESVPLTNVNWRKLIAPDCLAHDETVIEQTRETGTARPWETEFLRADGTRIPV-- 530

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            V+  + I   ++  +   ++ T   + E  L        KA   K+ F+  +S+ELR+P
Sbjct: 531 -VMGLTAIDPASSLCIGFVLDATRQKQTEANLLAAKLTAEKASAAKSEFLATMSHELRTP 589

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  +IG T LL  ++   L+S Q Q+     +S   LL L++DILDL+ V+AG ++L   
Sbjct: 590 LNGVIGMTQLLMNTE---LDSDQHQFARACHSSGKTLLALISDILDLSKVEAGRLELEQQ 646

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
              L +L+ EV+ S    +  + +  +       G  +  DR RLL++   +L NA  F+
Sbjct: 647 PFRLGNLITEVEDSTRPALEADGLTFQNTRQFPEGLVLRGDRVRLLRVLMNLLGNAGKFT 706

Query: 703 SKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            +GS  ++      + D  D  FS+ + G  I       +F+ F        RR  G GL
Sbjct: 707 PEGSISLVTRMEQPSEDTADLHFSITDTGIGIEGSKQGRLFDAFTQLDSSTTRRYGGSGL 766

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  +    G + + S     +T   RI
Sbjct: 767 GLAICKHLVEAMEGEIGVESELGHGSTFWFRI 798


>gi|283851963|ref|ZP_06369239.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572687|gb|EFC20671.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1139

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 135/719 (18%), Positives = 256/719 (35%), Gaps = 88/719 (12%)

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAF-LRILSLDGI--YSELAETTLKC------ 185
           R+ G+             +   GR+ G C   LR+ S  GI   S L E +  C      
Sbjct: 148 RRSGEP----GIAMAHPVLDAAGRIVGVCVLNLRLSSFTGIFAKSRLPEGSEACLFDDAG 203

Query: 186 -------------KKLSNHISVFKVLFDSLDFLVWHR-DQAGDILWANISYKKNTET--- 228
                            +     +   D+     W      G   +   +      T   
Sbjct: 204 IVLASWPGPSPAVGHPLDGADALRARHDADPDTAWTAPGTDGSPFYYVTADVAADATTRF 263

Query: 229 ---------------EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS---TLE 270
                          E ++ +  +G    L    +   + + S L       V     + 
Sbjct: 264 HILVGLPARAVLGPLEAVMGRDMVGLGLALALALVAAHLFAGSFLLGPIQRLVQMAAAMA 323

Query: 271 HGN-NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
            G+  +   +        E G A+D      + +++  T +I+  +   I     +    
Sbjct: 324 GGDLARRSGLADGQGELAELGRALDA-MADRLGERVRFTQDIIDAIPARIVFKGLDGRYL 382

Query: 330 FHNRSFVELWEIDLAFLAT------NPSNDELLEFLRSAN-KLPEQLNWKTWKENIFSVY 382
             NR++          L        +P+  E +E   +   + PEQ    T +  I S +
Sbjct: 383 GCNRAYARDIHPQAEILGKTCRETESPAQAERIEISDAELLRNPEQ----TMEMEIESAF 438

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +    H         +++    +  P G  + +  ++T +   E             +  
Sbjct: 439 RDGSLHDMMVL----KSVFKDASGRPAG-IVNVALDITDRKRSEKALLASETKYRALLAS 493

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + +G  V   +GRI  SNPAFR +     + L   T+           ++E++   L  A
Sbjct: 494 IRDGFVVVDDNGRIMESNPAFREMVGYSRDELGRLTY----KDLTPESWHETEETILRTA 549

Query: 503 IITS-----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           + T      F+ E +   G++  ++  +  Y      N +      ++TD    E  L +
Sbjct: 550 VDTCGFSDVFEKEYRRRDGSVVPVALRLHRYPSRAGENYRYFAIVRDITDVKAIEADLRQ 609

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E    A+  K+ F+  +S+++R+PL  +IG T+L   +    L+++Q   +E +  S+
Sbjct: 610 AKETAETANRAKSDFLAKMSHDIRTPLHAVIGMTEL---TLGTLLSAQQRDALETVRESA 666

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+NDILD++ ++A  + +      L   L    +++  +  +  + + +     +
Sbjct: 667 ASLLALINDILDISRIEARKLDVAREDFDLRRTLAATVRAMRPQAAQKALFLGLAIAPAV 726

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729
             FV  D  R+ QI + ++ NA+ F+ +G   +  A     D         F+V + G  
Sbjct: 727 PRFVTGDEVRVRQILTNLIGNALKFTDQGGVTVSVAPMAGPDAPGDPLFLEFTVADTGVG 786

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           IP D   S+F  F            G GLGL+I      L GG +   S+    +T   
Sbjct: 787 IPSDKLASIFEMFTQANASVGKHYGGTGLGLAICRELARLMGGGIRTESTPGRGSTFRV 845


>gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 598

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 174/417 (41%), Gaps = 27/417 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  +            +  T   I+T++  GG    F  +  ++       N   + 
Sbjct: 200 RITAPLRKMRQAAFEVARGHFDTKVPILTNDEIGGLAMAFNQMGRRLQFNINALNQEKEQ 259

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  +G I ++NP        +      G     +A           
Sbjct: 260 LASILSSMADGVITFSREGEILITNPPAERF--LQAWYFEQGNDAETMAPL------PPQ 311

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +LFA ++   +++ +S + T++  +  +L   + PL     +   V V   +  ER L
Sbjct: 312 VKELFARVVR--EEKEQSTEVTIQGRTWVIL---MTPLYGKTMVRGAVAVLRDMTEERRL 366

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+++  F+ +VS+ELR+P+  + G+++ +      S   ++ +  + I  
Sbjct: 367 ----------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAAS-EEEKKEMAKVIYD 415

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  LVND+LDLA ++AG ++L Y  + L   +  V +       E  I +      
Sbjct: 416 ESLRMGRLVNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIELTAEFRD 475

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D  R+ Q+ + ++ NA+  +  G TV L   R        V+++GS IPE+  
Sbjct: 476 ENIEIAFDPDRIEQVLTNLIDNAIRHTEAGGTVRLIIERSGDGVTIHVQDSGSGIPEEDL 535

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             VF RF        R   G GLGL+I ++ +  H G +++ S     TT +  +P+
Sbjct: 536 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFSFYLPA 592


>gi|239617406|ref|YP_002940728.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506237|gb|ACR79724.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 538

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 133/244 (54%), Gaps = 3/244 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + + + N  +++ + +K+ F+  +S+ELR+PL +IIGF  ++     G +N +Q + 
Sbjct: 281 KMIKTMEQDNIKIKELERLKSEFLATMSHELRTPLNSIIGFVSMILQGISGDINEEQRKQ 340

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  + +SS  LLNL+NDILD++ ++AG M  +     + D+++EV Q+++  + +  +++
Sbjct: 341 LSMVHSSSIHLLNLINDILDISKIEAGKMSFSKDRFNIKDVISEVVQNVSPLISKKEVKL 400

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                 ++    +D+ R+ QI   ++SNA+ F+ KG  + +K   D      SV + G  
Sbjct: 401 ITEIPDEIPEVYSDKTRVFQILLNLVSNAIKFTEKGE-IRIKCEVDGDKLKISVSDTGKG 459

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I E+  +++F  F     + R + +G GLGL + +  + L GG + + S     +T    
Sbjct: 460 IKEEDMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTFTFT 519

Query: 788 IPSK 791
           +P K
Sbjct: 520 LPLK 523


>gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
 gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
          Length = 867

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 174/381 (45%), Gaps = 18/381 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  Q   +   +  V    +  +H  + + +  P G+I   NPAF +L    E  L+   
Sbjct: 224 IKEQYQSQKALSEKVSQLAQVAEHARDAIIITDPVGKITWVNPAFETLT---EYSLAEAR 280

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             + ++        ++     F+  I +    R  +    +       E  + P+ N   
Sbjct: 281 D-KTLSELLQGPNTQNVQLQKFSDSIQNHQPVRTEVLNYTKSNQPYWGERDLSPVMNEHG 339

Query: 539 -----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                ++   ++++ +  E+ L+++ +   +A + K+ F+ ++S+E+R+P+  I+GF+++
Sbjct: 340 QVQRFIVVERDISERIEIEKKLSDEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEI 399

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  S+  +   +Q   +  +  S+  L+ L+NDILD + V+AG + L      L +L+  
Sbjct: 400 LLESEKRN---EQRSLLHLLHKSAGNLITLINDILDYSKVEAGKLTLIEEPFDLRELVES 456

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VI 709
                A + ++ ++++ V     +    + DR R+ QI   ++ NA+ F+ +G     + 
Sbjct: 457 STALCAYQANKKDLKLLVDMPLDIHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKIT 516

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
            K       + F V + G  IPE+    + ++F    +    +  G GLGL+I +  + +
Sbjct: 517 EKRTPQGNVYCFDVIDTGIGIPEERLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQM 576

Query: 768 HGGHVSISSSDEGVTTINCRI 788
           +GG +S++S+    +  +  +
Sbjct: 577 YGGDLSVTSTLGSGSCFSFSL 597



 Score = 43.0 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 68/203 (33%), Gaps = 27/203 (13%)

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEG-----RVSGSCAFLRILS-LDGIYSELAE 180
           L K  + LR   Q    V +      I+I G     RV    AF R+ S L    + + E
Sbjct: 172 LMKRLDLLR---QGVVKVTQQGPGSQIEISGNDEVTRV--GEAFNRMSSSLAKAQNSIKE 226

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                K LS  +S    + +     +   D  G I W N +++  TE      +      
Sbjct: 227 QYQSQKALSEKVSQLAQVAEHARDAIIITDPVGKITWVNPAFETLTEYSLAEARDKTLSE 286

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEH---------GNNKSYKIVRVLNSFGEA-- 289
                     ++   S   +N     + + +         G      +  V+N  G+   
Sbjct: 287 LLQGPNTQNVQLQKFSDSIQNHQPVRTEVLNYTKSNQPYWGER---DLSPVMNEHGQVQR 343

Query: 290 --GIAIDVSKEITVNDQLTHTYE 310
              +  D+S+ I +  +L+   +
Sbjct: 344 FIVVERDISERIEIEKKLSDEVK 366



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 62/148 (41%), Gaps = 13/148 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  ++++++   ++  +   AI I D    + + N +F  L E  LA      +  ELL+
Sbjct: 231 QKALSEKVSQLAQVAEHARDAIIITDPVGKITWVNPAFETLTEYSLAEARDK-TLSELLQ 289

Query: 358 FLRSANKLPEQL-----NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
              + N   ++      N +  +  + +  KS++ +         + L  ++  + +   
Sbjct: 290 GPNTQNVQLQKFSDSIQNHQPVRTEVLNYTKSNQPY------WGERDLSPVMNEHGQVQR 343

Query: 413 IWMFE-NLTVQVDLETKYNTLVKVQGET 439
             + E +++ ++++E K +  VK     
Sbjct: 344 FIVVERDISERIEIEKKLSDEVKKSARA 371


>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
 gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
          Length = 1765

 Score =  309 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 114/640 (17%), Positives = 242/640 (37%), Gaps = 48/640 (7%)

Query: 185  CKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
             +++ +  S F+ L  ++   V+      +  + + + +    T      F +    S  
Sbjct: 631  AQQIKDSESRFRGLVANIPGAVYRTRVGDSWVMEYISSNISDITGFPASDFIENSHRSFA 690

Query: 243  LF----KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSFGEA----G 290
                        + I  + L++   E    ++H +   + +      + N  G A    G
Sbjct: 691  SLIIEQDLAATTQAIEQALLKQKSFEVQYRIKHRDGSIHWVHEKGKAIYNDDGVALWFDG 750

Query: 291  IAIDVSKEITVNDQLTHTYEILHNLTVAIAIF--------DQNRYLQFHNRSFVELWEID 342
               D++      +++  + + L  +T +I           +++R   F + + +      
Sbjct: 751  SINDITSSKLAQEKIAQSQQQLETITESIPSTVYQLHWCNNKDRTFTFLSSACITTLGFH 810

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE-NIFSVYKSSETHKDTWHLPNGQTLH 401
               + +N             + + E L+ K+ K       ++      D   L  G    
Sbjct: 811  RDEVMSNFDLVAECIISEERSHIIEALSGKSSKGLQWTEEFRYRHPIGDIRWLQAGAQGD 870

Query: 402  VIVTSNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +       G  IW     ++T +  ++              D+   G+      G I   
Sbjct: 871  LQA----DGCIIWNGYLMDITDRKQIDMDLEDREAHFRALFDNAGIGIVNVDERGNILDC 926

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            N  F    +T+   L       +      R    S    L      +   E + L  + E
Sbjct: 927  NEQFSLYMQTDVAHLKS-RSFFDFQHNDDRDKARSVFAKLIEGGSDNILTELRLLNQSGE 985

Query: 520  LLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             +    ++ ++  L +    LT       N+T   +   AL +  ++   A++ K+ F+ 
Sbjct: 986  CM---WMDITLTKLQDKHGKLTSVVLSMANITSLKQLSVALKQAKDSADAANQAKSDFLA 1042

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            ++S+E+R+P+  IIG + L   ++   L++KQ  Y++ I  +S  LL ++NDILD + ++
Sbjct: 1043 NMSHEIRTPMNAIIGMSQLCLQTE---LDAKQQNYIQKIDRASKSLLGIINDILDFSKIE 1099

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
            AG + +      L+ LL ++    + K  +  + +       +    + D  RL Q+   
Sbjct: 1100 AGKLDIESVDFQLDTLLEDLSDMFSVKASDKRLELLFAVAPNIPRHLLGDPLRLSQVLIN 1159

Query: 694  ILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            +++NA+ F+ +G  ++    L+   D+    FSV++NG  + E+    +F  F       
Sbjct: 1160 LMNNAIKFTEQGEVLLSISQLERVEDDIVLRFSVRDNGIGLTEEQRNRLFKSFSQADTST 1219

Query: 750  QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             R   G GLGL+I +  + L GG + + S     +T    
Sbjct: 1220 TRKYGGTGLGLAISKQLVELMGGEIGVESQFGNGSTFFFS 1259



 Score = 44.5 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 40/328 (12%), Positives = 107/328 (32%), Gaps = 32/328 (9%)

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
           T+    ++      G+    RI    G  SE+A  T K  +++  +   +          
Sbjct: 330 TRPIEELEAGIVAFGAGETKRIAKPRGAASEIATLTDKFNEMAEVLEEREAALLDSRGNR 389

Query: 207 WHRDQAG---DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
           + +   G      + +++     +      +K +G + +L K + ++    +   E N+ 
Sbjct: 390 FAKLIDGMSDKSFYCSVAPDGLLDQVSDGVEKVLGVAPELLKRKYQRMFSDNPINELNWQ 449

Query: 264 ETVSTLEH--------------GNNKSYKIV-RVLNSFGEAGIAIDV--SKEITVNDQLT 306
                L                G  +   +  + L S  +  ++I++  +        + 
Sbjct: 450 YMDRALLGENVPPHQIEMLDGFGKLRRLDVFMQPLLSDNQQLLSIEMLFNDVTEQFSAVA 509

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
            +  +L +   A+ I +++  L F N     L+  D   +     ++ + E +R  +   
Sbjct: 510 WSNAVLESAPEAMLIVEESGQLVFTNSRCQRLFGYDEQQMLAMSVDELVPEAVREQHADL 569

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGG---TIWMFENL 419
                   ++    + KS +  K      +G    V +          G         ++
Sbjct: 570 RAQFVAEGQDRKMGLGKSLKARK-----SDGGEFPVEICLGLLPIADDGQRQVAATVRDM 624

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGV 447
           T+++++  +           + ++   V
Sbjct: 625 TLELEIAQQIKDSESRFRGLVANIPGAV 652


>gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1002

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/529 (18%), Positives = 200/529 (37%), Gaps = 24/529 (4%)

Query: 278 KIVRVLNSFGEAGIAIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            +  +  +   AG+AI+  + ++ +         +   +   +     N  + ++N+ + 
Sbjct: 328 DLQLIERASHLAGVAIERQRWQLALQQSEYQLRLMTETIPQQVWTAQPNGLVDYYNQRWC 387

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           +        L T      +        K+ E         + + V     +    +H   
Sbjct: 388 DFTGKTQEQLKTESWEQII--HPEDLPKVEELWAKAVQTGSDYEVETRMLSGSGEYHWIL 445

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           GQ   +               ++T  +                 D + + +     DG +
Sbjct: 446 GQARPLRNQQGQIVKWYGTNTDITDHIQAREALRESELNFRTLADTMPQMIWTAKGDGWL 505

Query: 457 KLSNPAFRSLWKT-----EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           +  N  +           +     P  H  + A  C   ++ES        I       R
Sbjct: 506 EYCNQRWLDYTGMTLEETQGWGWQPVLHPDD-AQICIDIWSESVRTGQNYQIEYRL---R 561

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK-------NEALRK 564
           ++  G                    +   +  ++ D  R+E AL           EA   
Sbjct: 562 RARDGQYRWHLGRAFPLRNQKGQIIKWFGSCTDIDDHKRSEEALRNALQEKQAAYEAAET 621

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+ +K+ F+  +S+ELR+PL  I+G++ LLKT KL     K  + ++ I  ++ + ++L+
Sbjct: 622 ANRVKDEFLAILSHELRTPLNPILGWSQLLKTGKLDK--DKTDEALKSIERNAKLQVDLI 679

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +D+LD++ +  G + LN +T+ L D+++   ++++       I ++ + +  +G    D 
Sbjct: 680 DDLLDVSRILRGKLTLNVTTVNLADIISAALETMSLAASVKQIAVQTLIEPNIGKVRGDP 739

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL QI   +LSNA+ F+ +G  V+++  +        V + G  I       +F  F  
Sbjct: 740 ARLQQIVWNLLSNAIKFTPQGGEVVVQLEQIGSMAHIIVSDQGKGINRKFLPHIFEHFRQ 799

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
                 R   G+GLGL+IV   + LHGG V   S  +   TT+   +P 
Sbjct: 800 EDGSTTRKFGGLGLGLAIVRHLVELHGGTVEADSPGEGQGTTLKVILPL 848



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 84/281 (29%), Gaps = 32/281 (11%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDG-KDETPEIIGQ-LHQRIDIPQ 107
           ++ ++  +     SE   +L     +         VW    +   +   Q         Q
Sbjct: 342 AIERQRWQLALQQSEYQLRL-----MTETIPQQ--VWTAQPNGLVDYYNQRWCDFTGKTQ 394

Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE--TQNDCAIKIEGRVS----- 160
                 S+E  +      K+ +   K  + G  +++     + +     I G+       
Sbjct: 395 EQLKTESWEQIIHPEDLPKVEELWAKAVQTGSDYEVETRMLSGSGEYHWILGQARPLRNQ 454

Query: 161 GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
                       G  +++ +     + L      F+ L D++  ++W     G + + N 
Sbjct: 455 QGQIVKWY----GTNTDITDHIQAREALRESELNFRTLADTMPQMIWTAKGDGWLEYCNQ 510

Query: 221 SYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            +   T     ET+G  +Q  +         +I    + +    +     +     G  +
Sbjct: 511 RWLDYTGMTLEETQGWGWQPVLHPDDAQICIDIWSESVRTGQNYQIEY-RLRRARDGQYR 569

Query: 276 SY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE 310
            +  +   + N  G+     G   D+       + L +  +
Sbjct: 570 WHLGRAFPLRNQKGQIIKWFGSCTDIDDHKRSEEALRNALQ 610


>gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 585

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 158/371 (42%), Gaps = 24/371 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ LE +           I+++  G+ +    G I L N +++ ++           H+ 
Sbjct: 234 EMTLEQEMQQ--DRLHTLIENMGSGMILIDSRGYISLVNRSYKEIF-----------HVT 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +       YY      ++   +   F  E K  +  L  L    +E     +  A  + T
Sbjct: 281 DEEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQVLLPLD---IERKHFEVYGAPIIGT 337

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  V     +      L+K ++++  F+ +VS+EL++P+T+I GF++ L    + +
Sbjct: 338 NHEWKGIV----LVFHDITELKKLEQMRKDFLANVSHELKTPITSIKGFSETLLDGAMKN 393

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  ++  I   S  + +L+ D+LDL+ ++    KLN   + + DLL ++K  +  K
Sbjct: 394 -QKFCEHFLHIILKESERMQDLIEDLLDLSKIEQQGFKLNMGNVDIKDLLEDIKMVLDKK 452

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  I +++ +  +  S + D  RL QIF  ++ NA+ ++  G TV +    D  +   
Sbjct: 453 AQDKEIVLQMDA-MQHVSVIGDSSRLKQIFINLVHNAIIYTPVGGTVSVSLFEDEQNAYV 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ++    +F RF            G GLGLSIV+  +  H G +++ S   
Sbjct: 512 QVADTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGMITVESKVG 571

Query: 780 GVTTINCRIPS 790
             T     +P 
Sbjct: 572 EGTMFTVALPK 582



 Score = 44.9 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 69/173 (39%), Gaps = 30/173 (17%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLT--HTYEILHNLTVAIAIFDQNRYL 328
           ++Y+     +  G    AI++      E+T+  ++     + ++ N+   + + D   Y+
Sbjct: 209 RAYESH--SDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYI 266

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NRS+ E++ +         +++E L+ L       E  +     E +  ++ +    
Sbjct: 267 SLVNRSYKEIFHV---------TDEEYLDRLYY-----ESFHHTEIIELVEEIFMTEVKV 312

Query: 389 KDTWHLP-NGQTLH-------VIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           +    LP + +  H       +I T++   G + +F ++T    LE      +
Sbjct: 313 RKQVLLPLDIERKHFEVYGAPIIGTNHEWKGIVLVFHDITELKKLEQMRKDFL 365


>gi|300865045|ref|ZP_07109872.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300336982|emb|CBN55022.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1122

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 101/550 (18%), Positives = 200/550 (36%), Gaps = 60/550 (10%)

Query: 287  GEAGIAIDVSKEITVNDQLTHTYEILH-----------NLTVAIAIFDQNRYLQFHNRSF 335
            G   +  D++ E     +       L               V +  +  N  +   N   
Sbjct: 587  GTVILIRDITAEKEAEAEKMGLIASLQKSQKKLALHFQQTPVGVIEWKVNFEVSEWNPGA 646

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTW 392
             +++           S +E L        +P        + W E   S  +      +  
Sbjct: 647  EQIFGY---------SREEALGRNGIELLIPNTDLSYIHQLWAE--LSTNRGGRRSTNEN 695

Query: 393  HLPNGQTL---HVIVTSNPRGGTIW----MFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
               +G+ +       T     G +     + +++T    +  +     +   +  +++ E
Sbjct: 696  VRKDGKIILCEWYNTTLIDDDGNVVGVASLVQDVTELQRIVGELRASEERFRQMAENIHE 755

Query: 446  GVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
               +  P+ + I   +PA   +W      L        +A+       E     +     
Sbjct: 756  VFWMIDPNQKQILYVSPACEQIWGCSRQSLYENPQC--LASAIHPDDRERVMSFIEKNTQ 813

Query: 505  TSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
              +D E + L   G++  + D             + +    ++T    AE    +  ++ 
Sbjct: 814  AEYDREYRILRPDGSICWIRDRAFPIYNDVGEIYRIVGIAEDITQRKLAE-EFQKVAQSA 872

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              A++ K++F+ ++S+ELR+PL  IIG++DLLK         +    ++ I  +   LL 
Sbjct: 873  VAANQAKSAFLANMSHELRTPLNAIIGYSDLLKEDAEDLGAEEFISDLDRIQRAGKHLLG 932

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            L++DILD++ ++AG M+L        DL+ EV  ++   + +N+ +++V     L    A
Sbjct: 933  LISDILDISKIEAGRMELYLENFNPVDLIEEVIATVEPLVMKNSNKLEVSFGSNLDEMYA 992

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------------------DFIFSV 723
            D  +  QI   +LSNA  F+  G T+ +   +D                       +F V
Sbjct: 993  DPTKTRQILLNLLSNAAKFTKDG-TITITLTKDEKVGNEEIFNGDIESEGDYLCFLLFQV 1051

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G  +     + +F  F+       R   G GLGL+I   F  + GG + + S     
Sbjct: 1052 ADTGIGMSATQLEHLFQPFMQGDTSTTRQYGGTGLGLAISRHFCLMMGGDIEVESKLGSG 1111

Query: 782  TTINCRIPSK 791
            +    R+P K
Sbjct: 1112 SVFTVRLPVK 1121



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 74/249 (29%), Gaps = 45/249 (18%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------ 349
           +    + + L +   I+ NL   + + DQN  +   N + + L+++    L         
Sbjct: 434 TATEELQEALVYLSAIVDNLADGLLVIDQNGKIARFNPALLILFDLSEINLEGKEYQEVF 493

Query: 350 --------------PSNDELLE---------------FLRSANKLPEQLNWKTWKENIFS 380
                         P +   LE                L+  N L   L       +  +
Sbjct: 494 GSEITQLMEHSKSCPRDVFTLEIPLAGGRTGKAAVTAILKDDNNLRGSLIRDQQSLDTTA 553

Query: 381 VYKSSETH-KDTWHLPNGQTLHVIVTSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQG 437
             KS     ++ + + N +    I  S+     GT+ +  ++T + + E +   L+    
Sbjct: 554 NGKSQFPITQEKYSVANHRCSIPISQSSKIAYLGTVILIRDITAEKEAEAEKMGLIASLQ 613

Query: 438 ET-------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
           ++             GV  +  +  +   NP    ++            I  +       
Sbjct: 614 KSQKKLALHFQQTPVGVIEWKVNFEVSEWNPGAEQIFGYSREEALGRNGIELLIPNTDLS 673

Query: 491 YNESDGWDL 499
           Y      +L
Sbjct: 674 YIHQLWAEL 682



 Score = 44.5 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 416 FENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  L  +V+    +    +      +D+L++G+ V   +G+I   NPA   L+   E  L
Sbjct: 425 FATLEERVETATEELQEALVYLSAIVDNLADGLLVIDQNGKIARFNPALLILFDLSEINL 484

Query: 475 SPGTHIRNIAATCSRYYNESDGW 497
               +     +  ++    S   
Sbjct: 485 EGKEYQEVFGSEITQLMEHSKSC 507


>gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
 gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
          Length = 1331

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNVKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVSRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N+ +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNVKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|220908983|ref|YP_002484294.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865594|gb|ACL45933.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1808

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 196/572 (34%), Gaps = 43/572 (7%)

Query: 247  EIKKRMISSSALEKNFCETVSTLEHGNNKS----YKIVRVLNSFGEAGIAIDVSKEITVN 302
            +    +            T+S   +          ++VR       A +      E+ + 
Sbjct: 1101 QTFAIVSIPLIKGGTLIGTLSVTNNAPRVWQPEEVELVRETAERTWAAVER-ARAEMLLR 1159

Query: 303  DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-----IDLAFLAT------NPS 351
                    ++ N    + + D +  L   +    +++E     I   F          P 
Sbjct: 1160 ASHNTFRHLVENSPFGVYVIDADFRLAQVSAGAQKVFENVRPLIGRDFAEVLQIIWLEPF 1219

Query: 352  NDELLEFLRSANKLPEQLNWKT--WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
              E +   R   K  E  +  +   +       +S +   +   LP+G+           
Sbjct: 1220 ASEAITHFRHTLKTGEPYHAPSIVERRQDTDEVESYDWKIERITLPDGRF---------- 1269

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF------ 463
             G +  F +L+ ++  E       +      DH+S+   +    G I   N  +      
Sbjct: 1270 -GVVCHFYDLSERLHYEAALRDSEERFRNLADHMSQLAWMADEHGWIFWYNRRWFEYTGT 1328

Query: 464  --RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                +       +    H+  +       +   + W+    +       R  L   + + 
Sbjct: 1329 TLEEMQGWGWQAVHHPDHVDRVVQHIRHCFEMGEVWEDTFPLRGHDGQYRWFLSRAIPIR 1388

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                 +       N           +  R             +A++IK+ F+  +S+ELR
Sbjct: 1389 DQESGQILRWFGTNTDITERKQAEQERQRLLEQEQAARAEAERANQIKDEFLAILSHELR 1448

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            SPL  I+G+T LL++ K      K ++ +  I  ++ +   L++D+LD+A +  G + +N
Sbjct: 1449 SPLNPILGWTQLLQSRKFDPT--KTNEALATIERNAKLQTQLIDDLLDIAKILRGKLTMN 1506

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
               + L  ++     ++ T      + +  +   ++G    D  RL QI   +LSNA+ F
Sbjct: 1507 VVPVDLAFVIEAAIDTMRTAAVAKEMTLHAVL-PQIGRVSGDSARLQQIVWNLLSNAIKF 1565

Query: 702  SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            +     V ++  R+      ++ + G  I  D    +F  F        R   G+GLGL+
Sbjct: 1566 TPAKGVVEVRLEREGDRAKITISDTGKGINPDFLPHLFESFRQEDASTTRQYGGLGLGLA 1625

Query: 760  IVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
            IV   +  HGG +   S  +    T   + P 
Sbjct: 1626 IVRHLVEAHGGTIRAESPGEGQGATFIVQFPL 1657



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 76/481 (15%), Positives = 148/481 (30%), Gaps = 43/481 (8%)

Query: 20  FSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTEN 79
            S +I++   +A  L   +    L          ++ E     +E+     +  S L  +
Sbjct: 300 ESLEISLLKELAAQLGIALRQAELY----QQSQTELAERKRVEAELRASEERLRSALEAS 355

Query: 80  NCLTIVWDGKDETPEI--IGQLHQRIDI--PQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
                 WD   ET +I     L     +     D     F  +L      ++  A E+  
Sbjct: 356 --RMGTWDWNIETGQIQWSANLEAMFGLEPGAFDGSFEMFTRFLHPDDRDRVLAAVEQAI 413

Query: 136 KEGQ----SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
             G+     F +V           +G+V       + + + G   ++ E       L   
Sbjct: 414 STGEDYTIEFRVVYPNGTVRWALSQGKVFYGLNG-QPVRMTGNDIDITERKQAEIALQES 472

Query: 192 ISVFKVLFDSLDFLVWHRD-QAGDILWANISYKK---NTETEGIVFQKAIGESRKLFKEE 247
            S F+ L +++D + W R+       + + +Y++       E    Q+A          E
Sbjct: 473 ESRFRQLTENIDAVFWMREVTESRASYVSPAYERLWGLNPQELYENQQAWVNYIHPDDRE 532

Query: 248 IKKRMISSSALEKNFCET-VSTLEHGNNKS-YKIVRVLNSFGEA-----GIAIDVSKEIT 300
              R   + A E  F E     L +G  +  +     L +   A     GIA D++    
Sbjct: 533 PVYRAFQAKAAEGLFDEEYRIILPNGQIRWVHDRCFPLRNEARALYRFTGIAEDITDRKG 592

Query: 301 VNDQLTHTYEIL----HNLTVAIAIFDQ---------NRYLQFHNRSFVELWEIDLAFLA 347
               L  + E       N+    AI+           +   ++ N +      ++     
Sbjct: 593 SEQTLQKSEERFRTSVENMLDCFAIYQSIRNEQGEIVDFRTEYVNDAAC----LNNQMTR 648

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                  L E L           +    E   ++ K +  ++D +   +      I  + 
Sbjct: 649 EQQIGRGLCELLPGHRDSGLFDEYCQVVETGQALVKENLIYEDDYGQQHLTRAFDIRVAK 708

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
              G I  + ++T +   E K     +      D  + G+  +G        +   R LW
Sbjct: 709 LEDGFIATWRDITDRKRAEVKLLESERQLRIAKDAAALGIHDYGITSGTIQWDSRVRELW 768

Query: 468 K 468
            
Sbjct: 769 G 769



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 52/442 (11%), Positives = 130/442 (29%), Gaps = 56/442 (12%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD--FLVW--HRDQAGDIL- 216
           + A  R     GI  ++ +     + L      F+   +++   F ++   R++ G+I+ 
Sbjct: 574 ARALYRF---TGIAEDITDRKGSEQTLQKSEERFRTSVENMLDCFAIYQSIRNEQGEIVD 630

Query: 217 ----WANISYKKNTETEGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVS 267
               + N +         +  ++ IG              +           +   +   
Sbjct: 631 FRTEYVNDA---ACLNNQMTREQQIGRGLCELLPGHRDSGLFDEYCQVVETGQALVKENL 687

Query: 268 TLEHGNN-----KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVA 318
             E         +++ I       G      D++       +L  +   L        + 
Sbjct: 688 IYEDDYGQQHLTRAFDIRVAKLEDGFIATWRDITDRKRAEVKLLESERQLRIAKDAAALG 747

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           I  +         +    ELW +         + +     L      PE         N 
Sbjct: 748 IHDYGITSGTIQWDSRVRELWGVGPD---EPITYETFFSGLH-----PEDRAATQAAVNR 799

Query: 379 FSVYKSSETHKDTW---HLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKY 429
               +    +   +   H  +G T  +  T             +   +++T +   E + 
Sbjct: 800 ALDPRGDGKYDAEYRVIHRTDGLTRWIAATGIAIFEHERAVRLVGTVQDITARKLAEQEA 859

Query: 430 NTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
               ++    ++++ EG+ +   P+  I+  +   + L     + +  G  +        
Sbjct: 860 QEGKQILDALMEYIPEGITIADAPNVTIRRISRYGQQLTGRSLDVIE-GIPVEEHTEKWG 918

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE----YSIIPLPNAQTMLTFVN 544
            +Y +         +  +    R   QG +    + VL+      I  L NA  +     
Sbjct: 919 VFYPDGITPASNEMLPLT----RAVQQGEVVTDEEWVLQQPNGTKITVLCNAGPIYVNGE 974

Query: 545 VTDSVRAERALTEKNEALRKAD 566
           +T  V   R ++++    ++ +
Sbjct: 975 ITGGVVVWRDISDRKWREQQQE 996



 Score = 45.7 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 106/335 (31%), Gaps = 38/335 (11%)

Query: 5    MATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIIL-------LIRQRN-SLAKKVN 56
             A +     I+   + S  +   GT+ G L  T     +       L+R+        V 
Sbjct: 1091 SADVAAMAAIQTFAIVSIPLIKGGTLIGTLSVTNNAPRVWQPEEVELVRETAERTWAAVE 1150

Query: 57   ETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE 116
               + +  +    + +  L+  +     V D      ++     Q++           F 
Sbjct: 1151 RARAEML-LRASHNTFRHLVENSPFGVYVIDADFRLAQVSAG-AQKVFENVRPLIGRDFA 1208

Query: 117  N-----WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSL 171
                  WL+      ++     L K G+ +   A +  +     +   S      RI   
Sbjct: 1209 EVLQIIWLEPFASEAITHFRHTL-KTGEPYH--APSIVERRQDTDEVESYDWKIERITLP 1265

Query: 172  DGIYS------ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
            DG +       +L+E       L +    F+ L D +  L W  D+ G I W N  + + 
Sbjct: 1266 DGRFGVVCHFYDLSERLHYEAALRDSEERFRNLADHMSQLAWMADEHGWIFWYNRRWFEY 1325

Query: 226  TETEGIVFQ----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-GNNKSYKIV 280
            T T     Q    +A+     +  + + + +     + + + +T     H G  + +   
Sbjct: 1326 TGTTLEEMQGWGWQAVHHPDHV--DRVVQHIRHCFEMGEVWEDTFPLRGHDGQYRWFLSR 1383

Query: 281  RVLNSFGEAGIAI-------DVSKEITVNDQLTHT 308
             +     E+G  +       D+++      +    
Sbjct: 1384 AIPIRDQESGQILRWFGTNTDITERKQAEQERQRL 1418


>gi|51891981|ref|YP_074672.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855670|dbj|BAD39828.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 837

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 20/373 (5%)

Query: 421 VQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            Q++ E  + +  + +    +  +  G  +    G + +SN  F+  +            
Sbjct: 477 AQLEEERDRASAQLDIYLSIVSTMPAGAWLCDTGGNLLVSNSMFQEFFGKTVPDEPLEQM 536

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  IAA         +       +     D +   +G L L +   L++S  P+   Q+ 
Sbjct: 537 LAQIAAVL------PEDDPFPQTVRDLVHDPQAVAEGQLRLTTGYTLQWSSAPVGKGQSR 590

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  +     V     L          D +K+ FV  VS+ELR+PLT+I+G+  L+     
Sbjct: 591 VGRLFTFQDVTELAEL----------DRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTA 640

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L  +Q +++  ++ ++  L NL+ND+LD+  +++G M ++ S   L  ++ +V ++  
Sbjct: 641 GPLQEQQREFLNIVARNTNRLANLINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFR 700

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +  +  +   V    ++    AD  RL QI + ++SNA+ ++ +G  V +  +      
Sbjct: 701 VQAEQKGLSFTVNVPEEVPLINADPDRLTQIIANLVSNAVKYTKEGG-VTVSVSAVGDQV 759

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I     K +F +F    H    +  G GLGL IV++ +  HGG + + S 
Sbjct: 760 ELEVADTGIGISPADQKRIFEKFYRAEHPYVREVGGTGLGLPIVKTMVEEHGGDLQLESQ 819

Query: 778 DEGVTTINCRIPS 790
               +      P+
Sbjct: 820 PGRGSRFIVSFPA 832



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 20/228 (8%)

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
           VW RD    +      Y     T   +   AI  +         + +  + A + +    
Sbjct: 395 VWLRD----VPVVQEVYVPLVHTGRAIGVVAIAFTEPTELNAEAQALWHAVAGQASVALA 450

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN 325
            +       +++  ++   +  E   A    +    + QL     I+  +     + D  
Sbjct: 451 AAQNHQEVKRAFAALQDQAAQIEILNAQLEEERDRASAQLDIYLSIVSTMPAGAWLCDTG 510

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLPEQLNWKTWKENIFSVYK 383
             L   N  F E +             DE LE + +  A  LPE   +     ++  V+ 
Sbjct: 511 GNLLVSNSMFQEFFG--------KTVPDEPLEQMLAQIAAVLPEDDPFPQTVRDL--VHD 560

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLET 427
                +    L  G TL        +G    G ++ F+++T   +L+ 
Sbjct: 561 PQAVAEGQLRLTTGYTLQWSSAPVGKGQSRVGRLFTFQDVTELAELDR 608


>gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
 gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
          Length = 1331

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
          Length = 1328

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 164/393 (41%), Gaps = 29/393 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N+ +Q   E K     ++  E ++     +      G+    N  F  L     +
Sbjct: 450 IQLSQNVELQRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMH 509

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-------V 525
            +   T I          +++ D    F  +      E+ S    L L           V
Sbjct: 510 EIVGRTPIE--------VFSQQDASHHFTQVHQELSQEQCSKNYELSLFDSQGGCRDMLV 561

Query: 526 LEYSIIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            E S        +  +   +++T+  + E  L E  +        K  F+ ++S+E+R+P
Sbjct: 562 CEASFNNSQGRVSGIVGILLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTP 621

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   L   ++   L+  Q +Y+  I+ S+  LL ++NDILD + ++AG + +   
Sbjct: 622 MNAILGMAHLALNTE---LDPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESI 678

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
              L+++   +   I+ K  E  I   +  D ++    V D  RL Q+   +  NA+ F+
Sbjct: 679 DFSLDEVFENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFT 738

Query: 703 SKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
            KG  +++       + D+    FSVK+ G  I ++    +FN F        R   G G
Sbjct: 739 EKGE-ILVSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTG 797

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSI +  + L GG +S+SS+    +T    I
Sbjct: 798 LGLSISKQLVELMGGQLSVSSAVGMGSTFTFTI 830



 Score = 37.6 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVF-KVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           LS+    S+  E   K ++     S   + + ++    ++     G  L  N  + + T 
Sbjct: 446 LSVSIQLSQNVELQRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELT- 504

Query: 228 TEGIVFQKAIGE-SRKLFKEEIKKRMISSSALE-------KNFCETVSTLEHGNNKSYKI 279
             G+   + +G    ++F ++      +    E       KN+  ++   + G       
Sbjct: 505 --GLAMHEIVGRTPIEVFSQQDASHHFTQVHQELSQEQCSKNYELSLFDSQGGCRDMLVC 562

Query: 280 VRVLNS-----FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               N+      G  GI +D+++   +  +L    +    ++ A
Sbjct: 563 EASFNNSQGRVSGIVGILLDLTERKQMESELREAKDTADAMSRA 606


>gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 959

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 92/403 (22%), Positives = 170/403 (42%), Gaps = 29/403 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQG----ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           F  L  Q  L    N  +  +     + ++ L  GV V+   G+I  +N   + L++ E 
Sbjct: 421 FSELEAQNSLSEALNRQLSDREYWLKQFLEALPVGVLVYDKHGKIYYANQKLKKLFRAEH 480

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYS 529
                   +   A     Y + +D      A+  + +   +   ++       D  +  S
Sbjct: 481 IP---EVSLEEFAEINHLYLSSTDQLYPTKALPLVRALKGKTVPIENIEIRHPDQTICCS 537

Query: 530 I--IPLPNAQ-----TMLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQH 575
           +   P+ +++      +  F ++T   +AE       + L EKN+AL++ DE+K+ F+ +
Sbjct: 538 LMATPIFDSEEDIVYGIGVFEDITQRRQAEIERQNFTKQLKEKNDALKRMDELKDEFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            S+ELR+PL  +IG ++ +     G L   Q Q +  I+ S   L  LVNDILD + +  
Sbjct: 598 TSHELRTPLNGMIGLSESMLDGVAGPLTELQRQNLSMIAKSGHRLSTLVNDILDFSKLRH 657

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             ++L    + L +++  V       +   +I +         +  AD  RL QI   ++
Sbjct: 658 QTLELQLQPLGLREIVEVVVVLSKPLIGNKDIELINEIPDDFPAVNADENRLQQILYNLI 717

Query: 696 SNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
            NA+ F+  G+  I    L    +N   + ++ + G  I  +    +F  F         
Sbjct: 718 GNAIKFTDSGTVKITASVLDTDANNSMAVINISDTGIGILPEKHHRIFESFEQGDGSTAR 777

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           Q  G GLGL+I +  + LH G + + S     +T +  +P  E
Sbjct: 778 QYGGTGLGLAITKQLVELHQGKIWLDSVVGSGSTFSFTLPISE 820



 Score = 45.3 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 14/159 (8%)

Query: 296 SKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-------LA 344
           S    +N QL+       + L  L V + ++D++  + + N+   +L+  +         
Sbjct: 429 SLSEALNRQLSDREYWLKQFLEALPVGVLVYDKHGKIYYANQKLKKLFRAEHIPEVSLEE 488

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           F   N       + L     LP     +  K     +      H D     +     +  
Sbjct: 489 FAEINHLYLSSTDQLYPTKALPLV---RALKGKTVPIENIEIRHPDQTICCSLMATPIFD 545

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           +       I +FE++T +   E +     K   E  D L
Sbjct: 546 SEEDIVYGIGVFEDITQRRQAEIERQNFTKQLKEKNDAL 584


>gi|53712152|ref|YP_098144.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215017|dbj|BAD47610.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 929

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 122/656 (18%), Positives = 254/656 (38%), Gaps = 53/656 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAG-----DILW 217
            + SL  I S   E      +     S  + LF  +      +   RD AG      I  
Sbjct: 283 WLSSLANIISICIELRKAKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIAD 342

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA--LEKNFCETVSTLEHGNNK 275
           AN     ++E  G+     +G        + K ++             ET          
Sbjct: 343 AN---DLSSELIGMSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRS 399

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
           S+ IV          + +D ++ I  +  L  + +    I  N+   + I+D++  L   
Sbjct: 400 SHCIVYSPEKDEVVALFLDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDL 459

Query: 332 NRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           N   +E +        + + F        E+ E +R+ + +  +LN+          Y S
Sbjct: 460 NNWDMETFGVKDKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLNYS--FNKASDYYHS 517

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +++    +    +        N   G + +  + T ++D   +            D+  
Sbjct: 518 DKSNIIELYTKVSKLFDSQGNFN---GYVLINIDNTERIDAINRIRDFENFFLLISDYAK 574

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG--WDLFAA 502
            G A         LS   +      +    +    + ++     + + E     +D +  
Sbjct: 575 VGYAKLN-----LLSKRGYAIKQWFKNMGETEDIPLSSVVGVYDKMHPEDRQKVFDFYEK 629

Query: 503 IITSFDDERKSLQGTLELLS---DSVLEYSII------PLPNAQTMLTFVNVTDSVRAER 553
           ++   + + +S    L+  +    + +  +++           + +    ++T+    E 
Sbjct: 630 VLAGEEKDFRSEMRILKPGATNEWNWVRMNVVVTKFEPEHGEVEIIGINYDITELKETEA 689

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E     D +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y++ +
Sbjct: 690 MLIEAKEKAETMDRLKSAFLANMSHEIRTPLNAIVGFSGLLVDTEDM---EERCEYIKIV 746

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +LL L++DILDL+ ++AG  +  Y    +N L  ++ +S   K+ +  + +    
Sbjct: 747 QENNDLLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDP 805

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                + ++DR RL Q+ S  ++NA+ F+S GS + +   +      F V + G  I ++
Sbjct: 806 HPSDCTVISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKE 864

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RFV         G GLGLSI +S +   GG + + S +   +     IP
Sbjct: 865 QLTHIFERFVKLNSFIH--GTGLGLSICKSIVEQLGGVIGVDSEERKGSRFWFTIP 918


>gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
 gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
          Length = 1331

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
 gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
          Length = 1331

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 1236

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 92/393 (23%), Positives = 166/393 (42%), Gaps = 21/393 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           MF N   +   E              ++ +EG+    P GR   +NPA   +        
Sbjct: 537 MFSNTIERKRTEAVIRQTEAKYRSIFENAAEGICQTTPQGRYLSANPALAQILGYA---- 592

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAA------IITSFDDERKSLQGTLELLSDSVLEY 528
           +P   I  I    ++ Y + +    F A      +++ F+ +     G +  +S++    
Sbjct: 593 TPADLIEGITDIKTQVYIKPNRRAEFIAEMQANSVVSGFESQVYRQDGNIIWISENARVV 652

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                       T  ++T+   A  AL +  EA   A   K++F+ ++S+ELR+PL  II
Sbjct: 653 RDATGQIICYEGTVEDITERKAASVALKQAKEAAIAASRAKSTFLANMSHELRTPLNAII 712

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++++L      S        +E I  +   LL L+NDILD++ ++AG M L      ++
Sbjct: 713 GYSEILTEEAEDSGYRHIVPDLERICTAGRNLLTLINDILDISKIEAGRMDLYLEDFSIS 772

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+  V  +    +  N+  ++V    ++    AD  ++ QI   +LSNA  F++ G  +
Sbjct: 773 ALIESVISTAQPLVDRNSNTLEVECSDQIDILYADITKVRQILLNLLSNAAKFTTAG-QI 831

Query: 709 ILKAARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
            LK +    +          F V + G  +  +    +F  F        RR  G GLGL
Sbjct: 832 KLKVSPQPAEFPNTAPSLIQFQVSDTGIGMSPEQLDLLFQPFTQGDASTTRRYGGTGLGL 891

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I + F  + GG ++I S  +  +T    +P +
Sbjct: 892 TISQRFCQMMGGTITIDSQLDCGSTFTVILPRE 924



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 92/293 (31%), Gaps = 25/293 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  +  +      ++ +L   + I D N  L   N     L       L   P    LL+
Sbjct: 70  ETRLATERDRLQAVISSLGAGLCILDPNGCLLSMNPEAERLLGWKQTELLGQP----LLQ 125

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETH-------KDTWHLPNGQTLHVIVTSNP-- 408
            + S ++L   +++    ++      S   +        D +   N   L V    NP  
Sbjct: 126 RIASHSQL-STVDFPCTFQDCSDCSSSESPYPQILKSSDDQFRCKNDAILAVSYVLNPIL 184

Query: 409 ----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G   +F ++T +   + +    + +   T +    G+      G++   N  F 
Sbjct: 185 DHETLIGAALVFLDITDRKRAQLEAERSLSLLQATFNATDAGIVALDRGGKVCNFNQKFV 244

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            +W+  E           +     +        +    +  +    +      +E     
Sbjct: 245 EMWQIPEETFKSPHEQSVLTFVLRKLKYPPRFINTVMQLSAA---PKTPTYDIVEFKDGR 301

Query: 525 VLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           + E    P    +     + +F ++T+  R E++L  + E  +    +   F+
Sbjct: 302 IFEVYSHPSKMGEKIVGRVWSFRDITERKRVEKSLKHRVEFEQLITNLSTYFI 354



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 26/189 (13%)

Query: 279 IVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           I+      G A + +D++     ++     L+      +     I   D+   +   N+ 
Sbjct: 183 ILDHETLIGAALVFLDITDRKRAQLEAERSLSLLQATFNATDAGIVALDRGGKVCNFNQK 242

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWH 393
           FVE+W+I      + P    +L F+    K P       +   +  +  + +T   D   
Sbjct: 243 FVEMWQIPEETFKS-PHEQSVLTFVLRKLKYP-----PRFINTVMQLSAAPKTPTYDIVE 296

Query: 394 LPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGET---------- 439
             +G+   V    +  G    G +W F ++T +  +E      V+ +             
Sbjct: 297 FKDGRIFEVYSHPSKMGEKIVGRVWSFRDITERKRVEKSLKHRVEFEQLITNLSTYFIGL 356

Query: 440 -IDHLSEGV 447
            ID +  G+
Sbjct: 357 SIDEIDAGI 365



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 21/215 (9%)

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVTSN 407
           +P     L+ L  +   P   N   W+E +  + +S +E  ++ + +    TL       
Sbjct: 2   HPLLQRQLKRLALSENTP-PSNAVAWQEFLDRISRSYTEADQERYLMERSLTLSSRE--- 57

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                + ++E    + + ET+  T        I  L  G+ +  P+G +   NP    L 
Sbjct: 58  ----MLQLYEQ--QRQETETRLATERDRLQAVISSLGAGLCILDPNGCLLSMNPEAERLL 111

Query: 468 KTEENRLSPGTHIRNIAATCS----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             ++  L     ++ IA+        +          ++  + +    KS        +D
Sbjct: 112 GWKQTELLGQPLLQRIASHSQLSTVDFPCTFQDCSDCSSSESPYPQILKSSDDQFRCKND 171

Query: 524 SVLEYSII--PLPNAQTML----TFVNVTDSVRAE 552
           ++L  S +  P+ + +T++     F+++TD  RA+
Sbjct: 172 AILAVSYVLNPILDHETLIGAALVFLDITDRKRAQ 206


>gi|86356937|ref|YP_468829.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86281039|gb|ABC90102.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 767

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/518 (23%), Positives = 217/518 (41%), Gaps = 44/518 (8%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL- 365
                L      +  FD      F +RS  ++  +        P +D+ L F  +A  + 
Sbjct: 256 RVETALSRGRCGLWDFDFENREFFWSRSMYDMLGL--------PGSDKTLGFGEAARLMH 307

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH------VIVTSNPRGGTIWMFENL 419
           P+          I + +              G  +       VI +++ R   I +  ++
Sbjct: 308 PDDGGLYEIARAIANGHSGQVDQIFRMRHAGGHYVWMRARAQVIRSNSGRMHLIGIAMDV 367

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q  L  +Y    +   + I+  SE   ++  + R+ + N  F+  +   ++ L PGT 
Sbjct: 368 TEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQEAYGLPDSVLVPGTE 427

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSF----------DDERKSLQGT----------LE 519
              + A  +R   E    D   +  T+            +ER++  G           ++
Sbjct: 428 RSIVNAAAARPVIERRVADADGSGRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMK 487

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQ 574
              + + E     +     +       +  +AE          + E    A++ K+ F+ 
Sbjct: 488 RHQERLRESERRLMATIGDLSASRQTLELQKAELSTANANYQAEKERAEAANKAKSEFLA 547

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATV 633
           ++S+ELR+PL  I+GF+++L+    G L S K  +Y   I  S   LLN++NDILD++ +
Sbjct: 548 NMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKI 607

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG +KL+   I L  L+ E  +  A    E NI I+      L +  ADR+ + Q+   
Sbjct: 608 EAGHLKLHRERIDLVPLIEESLRFTAIPAAEKNIVIEQRISSGL-TLTADRRAMKQVLLN 666

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           +LSNA+ F+  G  + ++  R +G    ++ + G  IP      +   F  V + +   +
Sbjct: 667 LLSNAVKFTDDGGRIAVRTRRVDGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSK 726

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL+I  S  +LHGG + I S +   T I+ RIP
Sbjct: 727 GGSGLGLAISRSLTSLHGGRMKIRSREAVGTVISLRIP 764



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 60/160 (37%), Gaps = 16/160 (10%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++  +  +     + L +     + A  ++D+N  L   N  F E + +  +
Sbjct: 361 IGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQEAYGLPDS 420

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            L        +     +A  + E+        +     +++E       L + + L +  
Sbjct: 421 VLVPGTERSIV--NAAAARPVIERRV-----ADADGSGRTTEVQ-----LADERWLQINE 468

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                GG + +  ++T+    + +     +    TI  LS
Sbjct: 469 RRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 508


>gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
          Length = 1331

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|285018865|ref|YP_003376576.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283474083|emb|CBA16584.1| putative two-component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1619

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 116/722 (16%), Positives = 248/722 (34%), Gaps = 74/722 (10%)

Query: 130  ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA---------E 180
              E LR+      L             G+  G+   LR +S                  +
Sbjct: 416  HFETLRRHADGRLLDVLVSASPIYNAAGKPVGASMTLRDVSDQKAARAQILALNATLESQ 475

Query: 181  TTLKCKKLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
              ++  +LS+  ++ + +  +  +  +      G +   N   ++            +  
Sbjct: 476  VAVRTAELSSSTAMLEGVLGAASEVSIIVTAHDGLVTLFNTGAERLLGYRREEVVGRLNA 535

Query: 240  SRKLFKEEIKKR------------------MISSSALEKNFCETVSTLEHGNNKSYKIVR 281
                  EE+  R                  +  +        E      +G+ +   +V 
Sbjct: 536  EAFHLPEEVSTRGKALSLELGMPVQGFRVFVEKAERDGAETREWTYVCRNGDTRQVSLVV 595

Query: 282  VL------NSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFH 331
                    N  G  G+A+D+S+       L      T  IL      I  FD +  ++  
Sbjct: 596  TAIRTDQGNVTGYLGMALDISERQAAERLLARSTALTQAILDTAVNPIITFDAHGKVRSF 655

Query: 332  NRSFVELWEIDLAFL---ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            NR+   ++  +   +   +      E    L  A           W E + +  +     
Sbjct: 656  NRAGERVFGYNAGEIVGQSVGMLMPEAHASLHEAMLTDVWQVGPEWPEGVDNGREMQALR 715

Query: 389  KDTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            K+    P    L    T    G    + M  ++T +                       G
Sbjct: 716  KNGDAFPVEICL---GTMWMDGECLMVGMIADITERHRQRMALTAARDQLKMATAAAELG 772

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGW 497
            +  +  +      N     ++                    H  ++  T +  +   +G 
Sbjct: 773  IWSWTLNDGALEWNERMFEIYGWPVELREQSPRYEDWQRMVHPDDLGFTEASLHKALEGS 832

Query: 498  DLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             ++  +  I   D  ++ +QG      D+  +         + +    ++T+ ++AE+ L
Sbjct: 833  GVYDPVFRILREDGTQRHIQGGAHTERDAHGQVI-------RVIGINRDITEQLQAEQEL 885

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             +      +A + K+SF+ ++S+E+R+P+  ++G   LL+ +   +L+++Q+ YV     
Sbjct: 886  RQAKALADEASQAKSSFLANMSHEIRTPMNAVLGMLQLLRRT---ALDARQADYVGKAQK 942

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            + T LL+L+NDILD + ++AG ++L+     + +LL ++   ++       + I      
Sbjct: 943  AGTSLLSLLNDILDYSKIEAGKLQLDLHPFSMEELLRDLSVVLSGNHQRPEVEIVYRLGR 1002

Query: 676  KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSI 730
             +    + D  RL Q+   +  NA+ F+  G  +    +L           +V+++G  I
Sbjct: 1003 DIPDCLIGDSLRLQQVLINLAGNALKFTEHGHVLLNVDLLHRQPQAVTLRVTVEDSGIGI 1062

Query: 731  PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +  + +F+ F        RR  G GLGL I    + + GG + + S     +     +
Sbjct: 1063 SAEQQQRIFHSFTQAEASTSRRFGGSGLGLVISRRLVGMMGGQLQLHSVLGEGSRFWFDL 1122

Query: 789  PS 790
            P 
Sbjct: 1123 PL 1124


>gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
 gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
          Length = 1320

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/393 (22%), Positives = 164/393 (41%), Gaps = 29/393 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N+ +Q   E K     ++  E ++     +      G+    N  F  L     +
Sbjct: 442 IQLSQNVELQRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMH 501

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-------V 525
            +   T I          +++ +    F  +      E+ S    L L           V
Sbjct: 502 EIVGRTPIE--------VFSQQEASHHFTQVHQELSQEQCSKNYELSLFDSQGGCRDMLV 553

Query: 526 LEYSIIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            E S        +  +   +++T+  + E  L E  +        K  F+ ++S+E+R+P
Sbjct: 554 CEASFNNSQGRVSGIVGILLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTP 613

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   L   ++   L+  Q +Y+  I+ S+  LL ++NDILD + ++AG + +   
Sbjct: 614 MNAILGMAHLALNTE---LDPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESI 670

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
              L+++   +   I+ K  E  I   +  D ++    V D  RL Q+   +  NA+ F+
Sbjct: 671 DFSLDEVFENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFT 730

Query: 703 SKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
            KG  +++       + D+    FSVK+ G  I ++    +FN F        R   G G
Sbjct: 731 EKGE-ILVSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTG 789

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSI +  + L GG +S+SS+    +T    I
Sbjct: 790 LGLSISKQLVELMGGQLSVSSAVGMGSTFTFTI 822


>gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
 gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
          Length = 1331

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 451 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 511 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 461 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 518

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 519 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 578

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 579 ILLDMTERKEMEDELRKAKEAADAMSQA 606


>gi|153807442|ref|ZP_01960110.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
 gi|149129804|gb|EDM21016.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
          Length = 930

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 110/531 (20%), Positives = 223/531 (41%), Gaps = 29/531 (5%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
           ++ IV          + +D ++ +  N  +  + +    I  N+   + I+D++ YL   
Sbjct: 406 THWIVYSPEKDEVVALFLDTTQAVKANQAMDRSEKLFQNIFANIPAGVEIYDKDGYLVDM 465

Query: 332 NRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           N   +E++        + + F        ++ + +R+ + +  +LN+   +   +  Y++
Sbjct: 466 NNMNLEIFGVVDKSAVMGINFFENPNVPQQIRDRVRNEDLVDFRLNYSFQRAEGY--YET 523

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           S +     +    +        N   G I +  + T ++D   +            D+  
Sbjct: 524 SRSSMIELYTKVSKLYDNEGNFN---GYILINIDNTERIDAMNRIRDFENFFLMISDYAK 580

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            G A      R   +   +      EE+  L+    I        R Y      ++    
Sbjct: 581 VGYAKLNLITRKGYAIKQWYKNMGEEEDTPLNEVVGIYRHVHPDDRQYILDFYEEVKKGN 640

Query: 504 ITSFDDE-RKSLQGT---LELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEK 558
              F  E R    GT      +  +++  +  P  N  + +    ++T+    E  L   
Sbjct: 641 RRHFQKEMRIRRVGTTDQWNWVRSNIMVTNYRPDENEIEIIGINYDITELKETEAELILA 700

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +    AD +K++F+ ++S+E+R+PL  IIGF+DLL  ++      ++ +YV+ +  ++ 
Sbjct: 701 RDKAEMADRLKSAFLANMSHEIRTPLNAIIGFSDLLVEAENL---EERKEYVKIVRNNNE 757

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL L+ DILDL+ ++AG  + +   + +N L  ++   +  K+HE  + +   S     
Sbjct: 758 LLLQLITDILDLSKIEAGTFEFSCGDVDVNLLCEDIVCCMQMKVHE-EVELLFDSHLPQC 816

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             ++DR RL Q+    ++NA+ F+S+GS + +       +    V++ G  I E+    +
Sbjct: 817 HIISDRNRLHQVILNFVNNAIKFTSQGS-IRVGYQVKGEELEVYVQDTGVGIDEEQQLHI 875

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RFV         G GLGLSI +S I   GG + + S     +    R+P
Sbjct: 876 FERFVKLNSF--VPGTGLGLSICQSIIEQLGGRIGVDSELGKGSRFWFRLP 924



 Score = 44.5 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 61/185 (32%), Gaps = 15/185 (8%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G   H IV S  +   + +F + T  V      +   K+      ++  GV ++  DG +
Sbjct: 403 GVYTHWIVYSPEKDEVVALFLDTTQAVKANQAMDRSEKLFQNIFANIPAGVEIYDKDGYL 462

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N     ++   +     G +         +  +     DL   +    +   +  +G
Sbjct: 463 VDMNNMNLEIFGVVDKSAVMGINFFENPNVPQQIRDRVRNEDL---VDFRLNYSFQRAEG 519

Query: 517 TLELLSDSVLEY--SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN--SF 572
             E    S++E    +  L + +       + +    ER        +   + I++  +F
Sbjct: 520 YYETSRSSMIELYTKVSKLYDNEGNFNGYILINIDNTER--------IDAMNRIRDFENF 571

Query: 573 VQHVS 577
              +S
Sbjct: 572 FLMIS 576


>gi|254420304|ref|ZP_05034028.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196186481|gb|EDX81457.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 759

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 103/494 (20%), Positives = 200/494 (40%), Gaps = 43/494 (8%)

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQ-------LNWKTWKENIFSVYKSSETHKDT 391
           W++D A +  +     LL F  +   +P +         ++   ++      +    + T
Sbjct: 253 WDLDGAEVTLSDYMATLLGF-ETGGVVPAEAVMARIHPRYRDEVQHALRQATAYGAFEVT 311

Query: 392 WHLPN--GQTLHVIVTSNPRGG--------TIWMFENLTVQVDLETKYNTLVKVQGETID 441
           + +P   G+T  +      RG          + +  ++T     +    +      + ++
Sbjct: 312 FPVPGDGGRTRWIDARGQARGARGEAGFSAILGVALDITEARRAKAAAQSAESRLRDGVE 371

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG---THIRNIAATCSRYYNESDGWD 498
            +S+   +F   GR+ L N AF   +  +   +  G     +  IAA   +  +      
Sbjct: 372 SISDAFVLFDRQGRLILWNQAFEDAFDFQSGVVRRGAAKEELNRIAALAIKAEHAPTDGR 431

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                +   D     L         SV+  + I     +       V D  R    L   
Sbjct: 432 AGLREVELHDGRWLQLSERFTSEGGSVVTAADITAIKREETERRRAVEDLSRTVAQLEAS 491

Query: 559 NEALRK--------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            + L +              A++ K+ F+ ++S+ELR+PL  I GF++++     G +  
Sbjct: 492 QQMLSQLARKYEIAMTRAEAANQAKSEFLANMSHELRTPLNAINGFSEIMAAELFGPIGE 551

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K   Y   I  S   LL+L+NDILD+A ++AG M L+Y  + L D+  +  + +  K+ E
Sbjct: 552 KYKGYAGDILKSGQHLLSLINDILDMAKIEAGKMTLHYEPVSLRDVCEDAARLMRGKVLE 611

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDF 719
           + + +++ + G L    AD + + Q+   ++SNA+ F+ +G TV L       A      
Sbjct: 612 SGLTLEIEA-GDLPDIEADHRGVKQVMLNLISNAVKFTPEGGTVTLSLTPFKGAAGEDRV 670

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +  + G  I  +    +   F      H    +G GLGL++ +S I +HGG ++I S 
Sbjct: 671 RVACADTGIGIAPEHMVRLARPFEQVEGQHSKTTQGTGLGLALTKSLIEMHGGRLNIESE 730

Query: 778 DEGVTTINCRIPSK 791
               T ++  +P++
Sbjct: 731 PGVGTVVSFDLPTR 744



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/402 (15%), Positives = 142/402 (35%), Gaps = 39/402 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWA-NISYKKNTETEGIVFQKAI 237
                 ++ ++    F++  ++    VW  D  G ++  +  ++     ET G+V  +A+
Sbjct: 224 RRARASREWASSEKRFRIAVEAARCGVWEWDLDGAEVTLSDYMATLLGFETGGVVPAEAV 283

Query: 238 -GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-KSYKIV-RVLNSFGEAGI--- 291
                  +++E++  +  ++A    F  T      G   +      +   + GEAG    
Sbjct: 284 MARIHPRYRDEVQHALRQATAYGA-FEVTFPVPGDGGRTRWIDARGQARGARGEAGFSAI 342

Query: 292 ---AIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
              A+D+++              L     +++ A  +FD+   L   N++F + ++    
Sbjct: 343 LGVALDITEARRAKAAAQSAESRLRDGVESISDAFVLFDRQGRLILWNQAFEDAFDFQSG 402

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +    + +EL      A      +  +    +  +  +  E H       +G+ L +  
Sbjct: 403 VVRRGAAKEELNRIAALA------IKAEHAPTDGRAGLREVELH-------DGRWLQLSE 449

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNP 461
                GG++    ++T     ET+    V+    T   ++   + ++       I ++  
Sbjct: 450 RFTSEGGSVVTAADITAIKREETERRRAVEDLSRTVAQLEASQQMLSQLARKYEIAMT-- 507

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD----DERKSLQGT 517
              +  + +   L+  +H           ++E    +LF  I   +     D  KS Q  
Sbjct: 508 RAEAANQAKSEFLANMSHELRTPLNAINGFSEIMAAELFGPIGEKYKGYAGDILKSGQHL 567

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           L L++D +L+ + I           V++ D       L    
Sbjct: 568 LSLIND-ILDMAKIEAGKMTLHYEPVSLRDVCEDAARLMRGK 608



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 102/318 (32%), Gaps = 30/318 (9%)

Query: 28  GTIAGMLLTT-IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86
              AG+L    ++   +L+                 +      S+    +        VW
Sbjct: 192 AGAAGLLGEAWVLAAPVLLGLGVLALFLFQGLRRARASREWASSEKRFRIAVEAARCGVW 251

Query: 87  DGKDETPEIIGQLHQRIDIPQTDTDLLSFENW-----------LKFHHYIKLSKATEKLR 135
           +   +  E+         +      LL FE             +   +  ++  A  +  
Sbjct: 252 EWDLDGAEVT--------LSDYMATLLGFETGGVVPAEAVMARIHPRYRDEVQHALRQAT 303

Query: 136 KEGQ---SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
             G    +F +  +      I   G+  G+       ++ G+  ++ E         +  
Sbjct: 304 AYGAFEVTFPVPGDGGRTRWIDARGQARGARGEAGFSAILGVALDITEARRAKAAAQSAE 363

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
           S  +   +S+       D+ G ++  N +++   + +  V ++  G +++         +
Sbjct: 364 SRLRDGVESISDAFVLFDRQGRLILWNQAFEDAFDFQSGVVRR--GAAKEELNRIAALAI 421

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
            +  A   +    +  +E  + +  ++  R  +  G    A D++    +  + T     
Sbjct: 422 KAEHAP-TDGRAGLREVELHDGRWLQLSERFTSEGGSVVTAADITA---IKREETERRRA 477

Query: 312 LHNLTVAIAIFDQNRYLQ 329
           + +L+  +A  + ++ + 
Sbjct: 478 VEDLSRTVAQLEASQQML 495


>gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 752

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 94/400 (23%), Positives = 172/400 (43%), Gaps = 19/400 (4%)

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           + G   +  + T +V  E +      +     D      A +    R+ L N  F  L+ 
Sbjct: 340 QDGLSGIMTDTTERVRAEARSRMSEHLARSVADAYPGPFASWDQRHRLLLWNRHFARLFN 399

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWD---------LFAAIITSFDDERKSLQGTLE 519
             EN L  GT    + A  ++                  L + I  +F D   +  G + 
Sbjct: 400 LPENVLKAGTSYDVVMAEAAKQIRIERPVPGSDNGREILLLSDIWLNFYDRPTAGGGLVT 459

Query: 520 LLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSF 572
           +  D  S+  +    L   + +   V   D ++ +     R   E+     KA + K+ F
Sbjct: 460 VGLDISSIKNHQESLLGKEKKLRRLVLELDRMQGQSEEHARKYAEEKTKAEKASQAKSVF 519

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLA 631
           + ++S+ELR+PL  I GF+++L     G L + +   Y E I +S   LL+++NDILD+A
Sbjct: 520 LANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIGYAEDILSSGQHLLDMINDILDMA 579

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG M ++   I   + ++   + I  +  + +I + +     +     D + + Q+ 
Sbjct: 580 KIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDIDLNLTVKDDIPDIEGDHRAIKQMV 639

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
             ++SNA+ F+  G  + +   ++N     SV +NG  IP+     +   F         
Sbjct: 640 LNLVSNAIKFTDPGGYINISVVKENAFVRVSVADNGIGIPKQDIPRLAQPFEQSSADENR 699

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +G GLGLS+ +SF  +HGG + I S     TT++  +P
Sbjct: 700 NSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVSFLLP 739



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 29/183 (15%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQF 330
           + +++       G +GI  D ++ +    +   +  +  ++  A     A +DQ   L  
Sbjct: 330 RYFEMQGGPFQDGLSGIMTDTTERVRAEARSRMSEHLARSVADAYPGPFASWDQRHRLLL 389

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            NR F  L+ +    L    S D ++       ++   +               S+  ++
Sbjct: 390 WNRHFARLFNLPENVLKAGTSYDVVMAEAAKQIRIERPVP-------------GSDNGRE 436

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTV-----------QVDLETKYNTLVKVQGET 439
              L +   L+        GG + +  +++            +  L      L ++QG++
Sbjct: 437 ILLLSD-IWLNFYDRPTAGGGLVTVGLDISSIKNHQESLLGKEKKLRRLVLELDRMQGQS 495

Query: 440 IDH 442
            +H
Sbjct: 496 EEH 498



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 3/145 (2%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           L GI ++  E      +      + + + D+        DQ   +L  N  + +      
Sbjct: 343 LSGIMTDTTERVRAEARSRMSEHLARSVADAYPGPFASWDQRHRLLLWNRHFARLFNLPE 402

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
            V +        + +   + R+        N  E +   +      Y   R     G   
Sbjct: 403 NVLKAGTSYDVVMAEAAKQIRIERPVPGSDNGREILLLSDIW-LNFYD--RPTAGGGLVT 459

Query: 291 IAIDVSKEITVNDQLTHTYEILHNL 315
           + +D+S      + L    + L  L
Sbjct: 460 VGLDISSIKNHQESLLGKEKKLRRL 484


>gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 763

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/514 (19%), Positives = 197/514 (38%), Gaps = 37/514 (7%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            A  +S+ +   D L     IL ++   I   D    +   N    +L            
Sbjct: 9   YAKTISRILEERDHLQI---ILESIGDGIITTDMEGNISMMNPVAEKLTGWSREEALGKH 65

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNP- 408
              E+   + + +K P +  +    +N+F+   S    +++  L  +G+T      ++P 
Sbjct: 66  -LYEVFRIIDNTSKQPLENPF----DNVFTRGLSQGLLRNSALLDRDGETRFASACASPI 120

Query: 409 ------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                 R G + +F ++      E +   L  V   +    S  + +F   G ++  N  
Sbjct: 121 IDKNQKRAGMVVVFRDIDRIKKNEDEIRCLSWVLQLS----SNAIIIFDIQGIVQFINSR 176

Query: 463 FRSLWKT--EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           F  L      E        I N+     + +      + +   +   + + +    ++  
Sbjct: 177 FTQLTGYEAYEVVNRNLRLINNLPLDVEKIFARLRAGEEWHDEVFFHNRQLEPCWWSIYC 236

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            +    E  I             ++++  +AE  L +  EA   A+  K  F+ ++S+E+
Sbjct: 237 TAVRDEEDKIT-----SYCSIIQDISEHKQAEENLKKAKEAAEVANRAKAEFLANMSHEI 291

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIG T L   S L +    Q + +E I  +   LL+++++ILD + ++AG + +
Sbjct: 292 RTPLNAIIGMTSL---SLLSNPEPDQKENLEIIKMAGDTLLSIIDNILDFSKIEAGKLTV 348

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
                 L++L+ +       +  E  + +    D  +      D  RL Q+F+ ++ NA+
Sbjct: 349 EKINFNLHELIEKNITIHKARAQEKGLLLLYYIDPAIPVQVNGDPYRLQQVFNNLIGNAI 408

Query: 700 DFSSKGST-VILKAARD-NGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
            F+  G   V LK     +   +   SV + G  I     + +F  F            G
Sbjct: 409 KFTDHGEVEVRLKLLDIFDDHIVLQASVADTGRGITAGQQEKMFESFYQGDSSISRTYGG 468

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            GLGL+I +  + +  G + + S  E  +T    
Sbjct: 469 TGLGLNISKKIVEMMQGKIWLESDIESGSTFYFT 502



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 100/323 (30%), Gaps = 49/323 (15%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           + +E  E      ++       +++ +S+   +   D  G+I   N   +K T  +    
Sbjct: 2   LEAEKHEYAKTISRILEERDHLQIILESIGDGIITTDMEGNISMMNPVAEKLTGWSREEA 61

Query: 233 FQKAIGESRKLFK-------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-- 283
             K + E  ++         E     + +    +     +      G  +          
Sbjct: 62  LGKHLYEVFRIIDNTSKQPLENPFDNVFTRGLSQGLLRNSALLDRDGETRFASACASPII 121

Query: 284 ----NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
                  G   +  D+ +     D++     +L   + AI IFD    +QF N  F +L 
Sbjct: 122 DKNQKRAGMVVVFRDIDRIKKNEDEIRCLSWVLQLSSNAIIIFDIQGIVQFINSRFTQLT 181

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ- 398
             +          + +   LR  N LP  +      E IF+  ++ E   D     N Q 
Sbjct: 182 GYEA--------YEVVNRNLRLINNLPLDV------EKIFARLRAGEEWHDEVFFHNRQL 227

Query: 399 ---TLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNT-------LVKVQGETIDHL 443
                 +  T+             + ++++     E              + + E + ++
Sbjct: 228 EPCWWSIYCTAVRDEEDKITSYCSIIQDISEHKQAEENLKKAKEAAEVANRAKAEFLANM 287

Query: 444 SEGV-----AVFGPDGRIKLSNP 461
           S  +     A+ G      LSNP
Sbjct: 288 SHEIRTPLNAIIGMTSLSLLSNP 310


>gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 975

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 96/506 (18%), Positives = 195/506 (38%), Gaps = 23/506 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP----SNDE 354
              + + +    IL      I   D    +   N +  +++      +         +D 
Sbjct: 129 EDKSAKESRLNAILGTAIDGIVTIDHTGIILSFNEAASKIFGWQENQVQGKNVKMLMDDN 188

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           + +           ++          VY K    H     L  G+              +
Sbjct: 189 IAKHHDEYLLNAHNVDLGKIIGINRDVYAKHMNGHVFPIRLGIGEVNQPGHNPL----YV 244

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV---FGPDGRIKLSNPAFRSLWKTE 470
               +LT Q  L+       +     ID++  GVA    F  +  +   +P    L    
Sbjct: 245 GFITDLTEQRALQQSLEEKEQKYRSLIDNMP-GVAFRCKFDDNWTMLFISPNIIELTGYN 303

Query: 471 ENRLSPGTHIRN--IAATCSRYYNESDGWDLFAAIITSFDDERKSLQG-TLELLSDSVLE 527
            N  +      N  +  +  +   +     + A    S +   +   G  L LL    ++
Sbjct: 304 PNEFTEHCIEFNDLVLKSDQKQIVDEVTKAVDAKSQYSIEYRIRHRNGKILWLLDKGSID 363

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +     P        V++T+    E  L +      +A   K SF+ ++S+E+R+P+ +I
Sbjct: 364 FDAQGNP-KWIDGVLVDITERKEYEEKLEQAKFKAEEAAHAKQSFMANMSHEIRTPMNSI 422

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF+DLL  +    L+ +Q +++  ++ ++  LL L+N+ILD A ++ G + +      L
Sbjct: 423 IGFSDLLMDT---PLDQEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFSL 479

Query: 648 NDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +++ +  +   +  + ++ +K+   +    ++  D  RL Q+ + ++ NA+ F+ +GS
Sbjct: 480 KPVIDSIISTFWLEAKKKDLELKLHIKESVSSTYYGDPDRLRQVLTNLIGNAIKFTEEGS 539

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
             +      N    F V++ G  I +D  ++VF  F        RR  G GLG +I +  
Sbjct: 540 VTVTVGMTQNQHLFFEVQDTGIGIAKDRIQAVFQPFEQADGTTTRRFGGTGLGTTISKQL 599

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           + L GG +++ S     T     +P 
Sbjct: 600 VELMGGTINLVSELGKGTCFYFSLPL 625


>gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 792

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 162/385 (42%), Gaps = 21/385 (5%)

Query: 420 TVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           T Q  L  K   L++ + E       +    + V +    G I+  N AF  +       
Sbjct: 267 TSQKQLAQKNAELMERERESKLLATVVKAARDAVVITDQKGTIEWVNRAFEEMTGYALES 326

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +                  E       A  +      +  +        +  ++  I P+
Sbjct: 327 VQGKKP----GHFLQGEKTEESTRQRIAKSLAQGLPIKAEILNYDSQGREYWVDIDITPI 382

Query: 534 PNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +      + +    +VT+  R E  LT        A+E K++F+  +S+E+R+P+  ++
Sbjct: 383 SDENGNLDRFIAIERDVTEYKRLENKLTNTARDANAANEAKSAFLATMSHEIRTPMNGVL 442

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T +L+       +    + ++ I +S   L++++NDILD++ ++   + L +S   + 
Sbjct: 443 GLTQILEKEI---TDPNHREVLQLILSSGNHLVSILNDILDISKIENEALTLEHSPFKMI 499

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
           ++L+ VK +  +   E  +  +VI +    + F+ D  RL QI   ++ NA+ F+ KGS 
Sbjct: 500 EILSPVKNTYQSLCSEKGLLFEVIDNTPPYTQFIGDEVRLRQILLNLVGNALKFTQKGSI 559

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           VI       G   F VK+ G  I  D   SVF +F        R   G GLGLSIV+S +
Sbjct: 560 VISVEVNVGGMCRFEVKDTGIGITPDRLDSVFEKFEQAEASTTRQFGGTGLGLSIVKSLV 619

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L GG + + S     +T    +P 
Sbjct: 620 ELMGGEILVDSKVGRGSTFTVLLPL 644



 Score = 44.9 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 10/152 (6%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             L+    +LA+   +  +      +   +  +    V   DQ G I W N ++++ T  
Sbjct: 263 RELETSQKQLAQKNAELMERERESKLLATVVKAARDAVVITDQKGTIEWVNRAFEEMTGY 322

Query: 229 EGIVFQ---KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY---KIVRV 282
                Q          +  +E  ++R+  S A        +   +    + +    I  +
Sbjct: 323 ALESVQGKKPGHFLQGEKTEESTRQRIAKSLAQGLPIKAEILNYDSQGREYWVDIDITPI 382

Query: 283 LNSFGE----AGIAIDVSKEITVNDQLTHTYE 310
            +  G       I  DV++   + ++LT+T  
Sbjct: 383 SDENGNLDRFIAIERDVTEYKRLENKLTNTAR 414


>gi|209548532|ref|YP_002280449.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534288|gb|ACI54223.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 769

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/530 (23%), Positives = 215/530 (40%), Gaps = 66/530 (12%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---------LAFLATNPSNDELLE 357
                L      +  FD      F +RS  ++  +           A    +P +  L E
Sbjct: 256 RVETALSRGRCGLWDFDFENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMHPDDGGLYE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
             R+  K           + IF +  +   +   W     Q   VI +++ R   I +  
Sbjct: 316 IARAIAK-----GHSGQVDQIFRMRHAGGHY--VWMRARAQ---VIRSNSGRVHLIGIAM 365

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N  F+  +   ++ L PG
Sbjct: 366 DVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPG 425

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T    + A  +R         +    I   D    S    ++L  +  L+ +     +  
Sbjct: 426 TERSIVNAAAAR--------PVIERRIADADGPGYSRTTEVQLADERWLQINERRTRDGG 477

Query: 538 TMLTFVNVTDSVRAERALTE-----------------------------------KNEAL 562
            +    ++T   R +  L E                                   + E  
Sbjct: 478 RVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERA 537

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILL 621
             A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L S K  +Y   I  S   LL
Sbjct: 538 EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLL 597

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N++NDILD++ ++AG ++L+   I L  L+ E  +  A    E NI I       L +  
Sbjct: 598 NVINDILDMSKIEAGHLRLHCERIDLVPLIEESLRFTAIPAAEKNIVIDQRISSGL-TLT 656

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR+ + Q+   +LSNA+ F+  G  + ++  R +G  + ++ + G  IP      +   
Sbjct: 657 ADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRIDGAVLVTIADTGIGIPRSALSKIGQP 716

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V + +   + G GLGL+I  S   LHGG + I S +   T I+ RIP
Sbjct: 717 FEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRIP 766



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++  +  +     + L +     + A  ++D+N  L   N  F + + +  +
Sbjct: 361 IGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDS 420

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            L        +     +A  + E          I        +      L + + L +  
Sbjct: 421 VLVPGTERSIV--NAAAARPVIE--------RRIADADGPGYSRTTEVQLADERWLQINE 470

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                GG + +  ++T+    + +     +    TI  LS
Sbjct: 471 RRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 510


>gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 581

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 159/371 (42%), Gaps = 28/371 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +   K  +  +     +  + EGV V    G I L NPAFR  +      L      R +
Sbjct: 234 EQMHKLTSEQQRLAAILRGMGEGVMVTDTKGNIILVNPAFRKQFG-----LPGEVEGRPL 288

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
              C               ++ +F+++R+S         D V     IP+ N   M  +V
Sbjct: 289 VEVCRH-----------PDLLQAFEEQRES--------GDEVSCEITIPITNLVLMAHWV 329

Query: 544 NVTDS--VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +T     R   A+      L++ + ++  FV +VS+ELR+P+  I G+ + L    L  
Sbjct: 330 PLTRDSGNRGTVAVFHDISDLKRVETMRRDFVANVSHELRTPVAVIKGYGETLLDGALEE 389

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +  ++VE I + +  L NL+NDIL L+ ++A    L    + L   + + +  +   
Sbjct: 390 SPERSRRFVEIIVSHAERLTNLINDILTLSKLEARDAALTLHPLDLCGTIRKAQMLMEDH 449

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                IRI       +   +AD+ +L Q+   +L NA+ ++  G  V + A  +    + 
Sbjct: 450 ARSKGIRIAAECPDGMPKVLADQGQLEQVLLNLLDNAIKYTPDGGDVTVAARLEQERVVV 509

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  IP      +F RF         ++ G GLGL+IV+  + LHGG V ++S   
Sbjct: 510 AVSDTGIGIPARDLPRIFERFYRVDEGRSREQGGTGLGLAIVKHIVQLHGGEVQVASEAG 569

Query: 780 GVTTINCRIPS 790
             +T    +P+
Sbjct: 570 KGSTFTVTLPT 580



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 70/207 (33%), Gaps = 17/207 (8%)

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
                            ++  + +++   +++ +          +  G    Y + RVLN
Sbjct: 168 AVTLLLFSSLLLSIFLSRITAKPLREIADAAARIGVGERGVRIAMGKGEEIDY-LARVLN 226

Query: 285 SFGEAGIAIDVSKEI-TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                 +A  + +++  +  +      IL  +   + + D    +   N +F + + +  
Sbjct: 227 E-----MAARIEEQMHKLTSEQQRLAAILRGMGEGVMVTDTKGNIILVNPAFRKQFGLPG 281

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             +   P    L+E  R  + L     ++  +E+   V  S E      +L        +
Sbjct: 282 E-VEGRP----LVEVCRHPDLL---QAFEEQRESGDEV--SCEITIPITNLVLMAHWVPL 331

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYN 430
              +   GT+ +F +++    +ET   
Sbjct: 332 TRDSGNRGTVAVFHDISDLKRVETMRR 358


>gi|163793613|ref|ZP_02187588.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181415|gb|EDP65930.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 649

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/638 (17%), Positives = 232/638 (36%), Gaps = 35/638 (5%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI-----VFQKAI 237
           L    L   I+      +  D  +   D+   +L+ N  +++  +           ++A+
Sbjct: 2   LDSTTLPPDIAPLIEALNHADVGLAVFDRKSVLLFCNSRFQEIFDYPEALVTPGTTREAL 61

Query: 238 ----GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG--EAGI 291
                E  +L    +   +       +   E    L   + +  K+V      G   +  
Sbjct: 62  LRFDAERGELGPGNVDDLVREQLERVQYHIEHQIELTRSSGRQIKVVNRPLPSGGNVSTY 121

Query: 292 AIDVSKEITVNDQ---LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
              +    ++           + L      + ++D    L + N     + E +   L  
Sbjct: 122 HERLDDRKSLLGADLTFEALQQALDYAPDGLRVWDAKDRLIYANARIRRVSEAEGTPLRP 181

Query: 349 NPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
             + +E +    + N + E + + + + +    +++       T  L +G+ + +     
Sbjct: 182 GMTFEEHIRARVAKNLVAEAEADPEAYVQQRLEMHRLGG-RSYTTRLRDGRWVVIRDHRL 240

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           P GGT+   +++T    +E  Y    +   + +D  S+       + R  +         
Sbjct: 241 PDGGTVTTSQDITDIKRVEQAYRESEQRFHDFVDASSDRFWEMDENLRFTMVVDTAVGRR 300

Query: 468 KTEENRLSPGTHIRN--IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +    ++   T   N  +       +               F  E  +  G     S   
Sbjct: 301 EPPVAQVLGKTRWANAGVDVEDDPLFTTHKAVLDAREPFRDFRYEVPAADG-----SPRH 355

Query: 526 LEYSIIPLPNAQTMLTFVN---------VTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              S +P+ +                   T+  RA+R L E       A+  K+ F+  V
Sbjct: 356 WRVSGVPVFDEGGKFCGYRGTAADETEFSTELTRAQRELQEALRQAEIANRSKSLFLATV 415

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDA 635
           S+ELR+PL  IIGF+DLL     G L  ++ + Y   I  S   LL+L+ D+LDL+ ++ 
Sbjct: 416 SHELRTPLNAIIGFSDLLAQKVFGPLGDERYEGYAHDIQTSGQHLLSLIEDVLDLSRIEM 475

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++L    + L   +      +  +  +    I++       +  AD + + QI   ++
Sbjct: 476 GQIRLRLGLVDLPIEIQAAVAMVRARRGQEIASIQIEVAEGFPTLNADARLIRQILINLI 535

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
           SNA  F+     +++ A   +     +V ++G  I       V   F    +    +  G
Sbjct: 536 SNAAKFTPPSGRILVTAQVVDDGISIAVIDDGIGIDPADHAKVLRPFEQADNRLSRRYEG 595

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VGLGL + ++F+ +H G + + S+    TTI  R+P +
Sbjct: 596 VGLGLPLTKAFVEVHNGQLQLESAIGEGTTITIRLPKE 633


>gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1092

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/543 (18%), Positives = 190/543 (34%), Gaps = 57/543 (10%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
            ++ +I R   +     +           +        + +      I D    + + N 
Sbjct: 300 RRTLRIRRTAENAWTRAV-----------EAERRFETFMAHTPAISFIKDAAGRMIYVNH 348

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +FV       A        +   E +               +E    V ++    +    
Sbjct: 349 AFVRFHGFSAAQSIGRLDTELFGESV------------AGIRERDAEVLQTGRPVQYLLP 396

Query: 394 LP--NGQTLHVIVTSNPRGGTIW------MFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           LP  +G   + +V      G         +  +++ Q           +      +    
Sbjct: 397 LPGTDGALYYWLVLKFLLRGEAGETRIGVVAIDISDQQRAAELIARSEERYRMLFEEAPV 456

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            +     DG +   N A R L    E+ +  G H     A   R  + +           
Sbjct: 457 AIHEIDRDGLVTRINRAGRMLCGYSESEI-IGRHASEFVAPHYREESRAAVHAKMKGTRP 515

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALR 563
               ER   +    LL   V E +I              +++T+   A+  L      L+
Sbjct: 516 LAPFERHYQRKDGRLLRVEVHETAIFDHGGEIQGLRSCLIDLTERYEAQERLDAFALQLQ 575

Query: 564 KAD--------------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + +               +K+ F+ ++S+E+R+P+  ++G T+LL  S    L  +Q   
Sbjct: 576 QNNSALALALESARQATRLKSQFLANMSHEIRTPMNGVLGMTELLVQS---GLTEEQRSL 632

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              ++ S   LL ++NDILD + +++G ++L  +       +  V + +A   H  N+ +
Sbjct: 633 ALSVTQSGEHLLAIINDILDFSKIESGKLELEATPFDPTATIEAVIELMAPTAHIKNLEL 692

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNN 726
                 ++ +    D  RL Q+   +L NA+ F+++G  + ++A  D        SV + 
Sbjct: 693 TYWIAAEMPARVRGDAARLRQVLLNLLGNALKFTAEGE-IAIQATFDAAADRLRVSVADT 751

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE     +F  F    +   RR  G GLGL+I +S + L  G + I S     +T 
Sbjct: 752 GIGIPEAAIPHLFAAFTQADNSTTRRFGGTGLGLTIAKSIVELMDGEIGIESRYGHGSTF 811

Query: 785 NCR 787
              
Sbjct: 812 WFT 814



 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 95/274 (34%), Gaps = 33/274 (12%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLF 244
            +       F+        + + +D AG +++ N ++ +     G    ++IG    +LF
Sbjct: 314 TRAVEAERRFETFMAHTPAISFIKDAAGRMIYVNHAFVRF---HGFSAAQSIGRLDTELF 370

Query: 245 KEE---IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG------IAIDV 295
            E    I++R        +     +          Y +V      GEAG      +AID+
Sbjct: 371 GESVAGIRERDAEVLQTGRPVQYLLPLPGTDGALYYWLVLKFLLRGEAGETRIGVVAIDI 430

Query: 296 SKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           S +    + +  + E    +     VAI   D++  +   NR+   L     + +    +
Sbjct: 431 SDQQRAAELIARSEERYRMLFEEAPVAIHEIDRDGLVTRINRAGRMLCGYSESEIIGRHA 490

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---P 408
           ++ +    R  ++       K          +     +  +   +G+ L V V       
Sbjct: 491 SEFVAPHYREESRAAVHAKMKG--------TRPLAPFERHYQRKDGRLLRVEVHETAIFD 542

Query: 409 RGGTIWMFE----NLTVQVDLETKYNT-LVKVQG 437
            GG I        +LT + + + + +   +++Q 
Sbjct: 543 HGGEIQGLRSCLIDLTERYEAQERLDAFALQLQQ 576



 Score = 38.0 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/332 (8%), Positives = 97/332 (29%), Gaps = 67/332 (20%)

Query: 30  IAGMLLTTIIPII-----LLIRQ--RNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL 82
           + G+L    + ++        R+  R     +   T +  +E      ++ + +     +
Sbjct: 279 LLGLLFAACVLLLTAFTWWHYRRTLRIRRTAENAWTRAVEAE-----RRFETFMAHTPAI 333

Query: 83  TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFD 142
           + + D       +             +   + F  +       +L             F 
Sbjct: 334 SFIKDAAGRMIYV-------------NHAFVRFHGFSAAQSIGRLDTEL---------FG 371

Query: 143 LVAETQNDCAIKI--EGRV---------SGSCAFLRIL------------SLDGIYSELA 179
                  +   ++   GR          +    +  ++             +  +  +++
Sbjct: 372 ESVAGIRERDAEVLQTGRPVQYLLPLPGTDGALYYWLVLKFLLRGEAGETRIGVVAIDIS 431

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--EGIVFQKAI 237
           +     + ++     +++LF+     +   D+ G +   N + +         I+ + A 
Sbjct: 432 DQQRAAELIARSEERYRMLFEEAPVAIHEIDRDGLVTRINRAGRMLCGYSESEIIGRHAS 491

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFGEA---- 289
                 ++EE +  + +     +         +  + +  ++      + +  GE     
Sbjct: 492 EFVAPHYREESRAAVHAKMKGTRPLAPFERHYQRKDGRLLRVEVHETAIFDHGGEIQGLR 551

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAI 321
              ID+++     ++L      L     A+A+
Sbjct: 552 SCLIDLTERYEAQERLDAFALQLQQNNSALAL 583


>gi|254412478|ref|ZP_05026252.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180788|gb|EDX75778.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1082

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/574 (19%), Positives = 213/574 (37%), Gaps = 40/574 (6%)

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKE 298
           +   L+   + K + +    EK   E   TLE       + +   N      I      E
Sbjct: 284 QGTLLYGISVFKDITARKRTEKILTEYNQTLEQAVRDRTQELETKNQQLHQEIEERKLLE 343

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +         +   +   I I D        N   V           + P  ++ +E 
Sbjct: 344 QKLRTSEGKMRAVFEAMPDIILIIDPQT-----NDIQVAPTRPTRDIEKSIPLINQTIEQ 398

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGTIWM 415
              ++      N ++W + I  V ++ E     + L +          +   P    IW+
Sbjct: 399 FLDSD------NTQSWFQQIHQVIETQEPIHFDYSLNDADQRVWFTASIAPLPNNSVIWV 452

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRL 474
             N+T +   +       +            + +    DG     N +F          +
Sbjct: 453 ARNITDRKRTQFALYQSEEKFARAFRSSPSAMTITRLSDGCHIDVNDSFCQFTGYSAPEI 512

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T +        +  N          II +++ E ++  G +     S  + ++    
Sbjct: 513 IGRTALDLNLWVNQKDRNRMLKAISNKGIIRNYEFEFRTKSGDIRTALLSAEQINLD--E 570

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    +++D  + E AL    +   +A+  K+ F+ ++S+ELR+PL  IIGF  LL
Sbjct: 571 QTCLIAVSQDISDRKQVEFALQRAKDTAEQANRAKSQFLSNMSHELRTPLNAIIGFAQLL 630

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +  SL  +   ++  I  S   LL+L+N++L L+ V+AG +KLN  +  L  +L  +
Sbjct: 631 --GRDSSLTQEHHDHIGIICRSGEHLLSLINNVLQLSKVEAGQVKLNCYSFDLYGMLQVL 688

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++    +     +++ V  D  L  +V  D  +L Q+   +++NA+ F+S+G  V L+  
Sbjct: 689 EEMFKLQAENKGLQLVVDYDEALPRYVETDEGKLRQVLINLVNNAIKFTSQGG-VTLRVK 747

Query: 714 RDNGD------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGV 754
              G+                    F +++ G  I  +  +S+F  FV      +   G 
Sbjct: 748 AVQGEMGESTRHPTFNTLPIPQKLRFEIEDTGLGIASEEIESLFEAFVQTEAGRKSLEGT 807

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL I + F+ L GG + +SS     +     I
Sbjct: 808 GLGLPISQQFVRLMGGEIHVSSRLNQGSIFTFDI 841



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 90/327 (27%), Gaps = 52/327 (15%)

Query: 279 IVRVLNSFGEAGI-AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           ++      G+     +    E  V +      + L  + V + + + +  L F N+   +
Sbjct: 152 LLETSTEHGDLVFEQLHDQAEEAVRESEHRLAQFLEAVPVGVLVVEASGKLYFMNQQAKQ 211

Query: 338 LW--EIDLAFLATNPSNDELLEFLRSANKLPEQL--NWKTWKENIFSVYKSSETHKDTWH 393
           +   ++D         +   L    +    P       ++ +    +V      H +   
Sbjct: 212 ILAQDLDPNLHTDQLCSTYQLYRADTNQLYPLDRLPIARSLQGETVTVDDLEVRHANQRI 271

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVD----------------------------- 424
               QT+ +          I +F+++T +                               
Sbjct: 272 PLEMQTMPIYDEQGTLLYGISVFKDITARKRTEKILTEYNQTLEQAVRDRTQELETKNQQ 331

Query: 425 ----------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
                     LE K  T         + + + + +  P      +N    +  +   +  
Sbjct: 332 LHQEIEERKLLEQKLRTSEGKMRAVFEAMPDIILIIDPQ-----TNDIQVAPTRPTRDIE 386

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPL 533
                I           N    +     +I +   E      +L      V    SI PL
Sbjct: 387 KSIPLINQTIEQFLDSDNTQSWFQQIHQVIET--QEPIHFDYSLNDADQRVWFTASIAPL 444

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNE 560
           PN   +    N+TD  R + AL +  E
Sbjct: 445 PNNSVIWVARNITDRKRTQFALYQSEE 471



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 24/174 (13%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +FE L  Q   E           + ++ +  GV V    G++   N   + +       
Sbjct: 162 LVFEQLHDQ--AEEAVRESEHRLAQFLEAVPVGVLVVEASGKLYFMNQQAKQIL---AQD 216

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---------S 524
           L P  H   + +T   Y  +++       +  +     +SLQG    + D          
Sbjct: 217 LDPNLHTDQLCSTYQLYRADTNQLYPLDRLPIA-----RSLQGETVTVDDLEVRHANQRI 271

Query: 525 VLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            LE   +P+ + Q      +  F ++T   R E+ LTE N+ L +A   +   +
Sbjct: 272 PLEMQTMPIYDEQGTLLYGISVFKDITARKRTEKILTEYNQTLEQAVRDRTQEL 325


>gi|327193951|gb|EGE60826.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 769

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/530 (22%), Positives = 216/530 (40%), Gaps = 66/530 (12%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---------LAFLATNPSNDELLE 357
                L      +  FD      F +RS  ++  +           A    +P +  L E
Sbjct: 256 RVETALSRGRCGLWDFDFENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMHPDDGGLYE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
             R+  K           + IF +  +   +   W     Q   VI +++ R   I +  
Sbjct: 316 IARAIAK-----GHSGQVDQIFRMRHAGGHY--VWMRARAQ---VIRSNSGRMHLIGIAM 365

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N  F+  +   ++ L PG
Sbjct: 366 DVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPG 425

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T    + A  +R         +    I   D    S    ++L  +  L+ +     +  
Sbjct: 426 TERSIVNAAAAR--------PVIERRIADADGSGYSRTTEVQLADERWLQINERRTRDGG 477

Query: 538 TMLTFVNVTDSVRAERALTE-----------------------------------KNEAL 562
            +    ++T   R +  L E                                   + E  
Sbjct: 478 RVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLELQKAELSTANANYQAEKERA 537

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILL 621
             A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L S K  +Y   I  S   LL
Sbjct: 538 EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLL 597

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N++NDILD++ ++AG ++L+   I L  L+ E  +  A    E NI I+      + + +
Sbjct: 598 NVINDILDMSKIEAGHLRLHRERIDLVPLIEESLRFTAIPAAEKNIVIEQRICSGM-ALM 656

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR+ + Q+   +LSNA+ F+  G  + ++  R +G    ++ + G  IP      +   
Sbjct: 657 ADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVTVTIADTGIGIPRSALSKIGQP 716

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V + +   + G GLGL+I  S   LHGG + I S +   T I+ RIP
Sbjct: 717 FEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRIP 766



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 14/160 (8%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++  +  +     + L +     + A  ++D+N  L   N  F + + +  +
Sbjct: 361 IGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDS 420

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            L        +     +A  + E          I     S  +      L + + L +  
Sbjct: 421 VLVPGTERSIV--NAAAARPVIE--------RRIADADGSGYSRTTEVQLADERWLQINE 470

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                GG + +  ++T+    + +     +    TI  LS
Sbjct: 471 RRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 510


>gi|78060129|ref|YP_366704.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77964679|gb|ABB06060.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 781

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 97/496 (19%), Positives = 190/496 (38%), Gaps = 30/496 (6%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L  L   +   D N  L + N +   L              D L    R   ++     
Sbjct: 145 VLQALPHGVIATDTNGRLTYLNAAAAALVGCPPGDATGRAVRDVLRVVDRDGRRV----- 199

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQV 423
            ++   ++        + +    +  G+ + ++  + P G       G + +  +     
Sbjct: 200 -QSTPLDLALGGAGVVSDRHWLQVEGGEPVPIVEVAAPLGDADGNVDGAVLLLRD----A 254

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             +       ++Q   +D   + +     DGRI   NPA + ++  ++      T    +
Sbjct: 255 GADRSRADASRLQRAVVDASPDAIVGIDTDGRIVSWNPAAQRMFGYDDAHARGRTFESLV 314

Query: 484 AATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           A    +    ++ +D     +          D  R     +   +         + L   
Sbjct: 315 AMRWLKRKPLTESFDDMHEAVGPIDLLCVRRDGRRFRATVSAGPVRSDARACVALSLTLR 374

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++         + R+ R      +    ++ +K+  +  VS+ELR+PL  I G+ ++L+ 
Sbjct: 375 ESGAQRRRDLRAQRSLRGARVARDQAATSNRLKDELLATVSHELRTPLNVIYGWVEVLRN 434

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S   +L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + +  L ++   
Sbjct: 435 SGDSAL---QQQAIDAIDRSARSLTRMVGDILDASSLATGKLQLDAMPVDVVRLFSDSVG 491

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +  T      I ++            D +RL Q+ S ++SNA+ F+  G +V +  ARD+
Sbjct: 492 AFQTAASSAGIVLEFDCAASTCVVSGDAERLRQMLSNLVSNALKFTPAGGSVTVGLARDD 551

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
              + +V + G  I       VF+ F          RRG+GLGLSIV     LHGG V++
Sbjct: 552 VRVVLTVSDTGQGIVPAFLPYVFDMFRRADDSPASSRRGLGLGLSIVRHIAELHGGSVTV 611

Query: 775 SSSD-EGVTTINCRIP 789
            S+      T    +P
Sbjct: 612 KSAGRNRGATFTVTLP 627



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 74/259 (28%), Gaps = 33/259 (12%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNT-ETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
           +  +L   V   D  G + + N +         G    +A+ +  ++   + ++   +  
Sbjct: 145 VLQALPHGVIATDTNGRLTYLNAAAAALVGCPPGDATGRAVRDVLRVVDRDGRRVQSTPL 204

Query: 257 ALEKNFCETVSTLEHGNNKSYKI--------VRVLNSFGEAG--------IAIDVSKEIT 300
            L       VS     +    ++        V V    G+A         +  D   + +
Sbjct: 205 DLALGGAGVVS-----DRHWLQVEGGEPVPIVEVAAPLGDADGNVDGAVLLLRDAGADRS 259

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
             D       ++     AI   D +  +   N +   ++  D A          +     
Sbjct: 260 RADASRLQRAVVDASPDAIVGIDTDGRIVSWNPAAQRMFGYDDAHARGRTFESLVAMRWL 319

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGGTIWMFEN 418
               L E  +          ++++           +G+     V++ P        +  +
Sbjct: 320 KRKPLTESFD---------DMHEAVGPIDLLCVRRDGRRFRATVSAGPVRSDARACVALS 370

Query: 419 LTVQVDLETKYNTLVKVQG 437
           LT++     +   L   + 
Sbjct: 371 LTLRESGAQRRRDLRAQRS 389


>gi|317152715|ref|YP_004120763.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942966|gb|ADU62017.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1228

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 145/788 (18%), Positives = 285/788 (36%), Gaps = 79/788 (10%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII-------- 96
            I +R  + + +N   S L E   +L      L  +      W+    T   +        
Sbjct: 316  ITERKQVQEALNRQRSELEESQTRLR-----LAMDMADIAPWEMDIATRTFLFNDQFYSL 370

Query: 97   -GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
             G   QR       ++      +L       +S+   ++    +  +  A  ++   ++ 
Sbjct: 371  YGTTAQREGGYHMTSE-TYEREFLHPDDATMVSREVARVLVTQKP-NYTARLEH-RIVRR 427

Query: 156  EG---RVSGSCAFLRILS-----LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
            +G    +  +   LR          G   ++ E     + L      ++ L   +  +V 
Sbjct: 428  DGEVRHIVVTYLLLRDTHGNPVKTIGANQDVTEHKRFEQALFQSRESYRALLAGMPDIVM 487

Query: 208  HRDQAGDILWANISYKKNTETEGIVF------QKAIGESRKLFKEEIKKRMISSSALEK- 260
              D+ G  L+ + S +   E     F      +    E   LF  ++ K +  +    + 
Sbjct: 488  RFDREGRHLFVSDSVQAYVEPTSEAFLGKTHAELGFPEQDCLFWGKVIKTVFETGEPVET 547

Query: 261  --NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH-TYEILHNLTV 317
               F      +        +            I+ D++++            ++L    V
Sbjct: 548  EFPFESRKGPVIFNWRLIPEFDANGQIQSALSISRDITEQRQAEQDYESLFMKMLDGFAV 607

Query: 318  AIAIFDQ-----NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
               I D+     +      N +F     +    +  +     +LE L             
Sbjct: 608  HEIICDESGRPIDYRFLAVNPAFESHTGMKAEEVLGH----TVLEILPDTE--------S 655

Query: 373  TWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
             W E    V  + E  H +++     +   V       G    +F ++T ++  +     
Sbjct: 656  AWVEKYGHVALTGEPLHFESYSHMLRKHFEVTAFRPAPGRFACIFADVTERMQAQEDLRR 715

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            + ++  + I  +S+         R    NPAF S     E  L    +   +     +  
Sbjct: 716  IFELSKDMI-SISD-----NRSARFLRINPAFMSTLGYSEEELLRQPYTALVHPDDVQMT 769

Query: 492  NESDGWDLFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-TMLTFVNVTDSV 549
             +     L A   + +F++  +   G         L +   P+ +   T     +VTD  
Sbjct: 770  ADIIRDKLMAGDEVVNFENRYRCKSGEY-----IWLNWVARPMADKGLTYAIARDVTDRK 824

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            + E  L    E    A   K+ F+ ++S+E+R+PL  I+G   L++ ++   L+ +Q  Y
Sbjct: 825  KYEAELIAAKETAESATRAKSQFLANMSHEVRTPLNGILGMLQLMQQTR---LDHEQDDY 881

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            V     +S  L  L++DILD++ ++A  + +      L++ LN V+       +++ I  
Sbjct: 882  VGNAIQASRRLTRLLSDILDISRIEAEKLIIMAEPFNLHESLNTVRDLFLPVANQSGIDF 941

Query: 670  KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFS 722
            +     K+  + + D  RL Q+ S ++ NA+ F+S G TV ++A         +   +FS
Sbjct: 942  EFRVSPKIPTTLLGDAIRLQQVISNLVGNALKFTSSG-TVTVEATTLSPLKPGSCRMLFS 1000

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +K+ G  IP+D    +F  F         Q +G GLGLSI +  + L GG + I S    
Sbjct: 1001 IKDTGCGIPDDRLGQLFQPFTQVDDSWNRQYQGAGLGLSITKRLVALMGGTLCIESRVGV 1060

Query: 781  VTTINCRI 788
             TT++  I
Sbjct: 1061 GTTVHLSI 1068



 Score = 38.8 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 87/289 (30%), Gaps = 35/289 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E  + +   H  E      +    +D        +     LW++D       P+ D  +
Sbjct: 195 AEQILAENRLHLVEAQKLALIGSWTYDSATGTATWSDEMFRLWDLDSE--QGPPNRDTFI 252

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNPRGGTIW 414
           + +   +            +NI S  + S      +    P+G T  V +    +     
Sbjct: 253 QSIHPDDV--------QAVKNILSRTRESGAFSLDFRIKRPDGTTRTVAMRGMRKDDGTG 304

Query: 415 -------MFENLTVQVDLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIKLSN 460
                    +++T +  ++   N       E        +D             R  L N
Sbjct: 305 QATVMQGTCQDITERKQVQEALNRQRSELEESQTRLRLAMDMADIAPWEMDIATRTFLFN 364

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG--WDLFAAIITSFDDERKSLQGTL 518
             F SL+ T   R                + +++     ++   ++T   +    L+  +
Sbjct: 365 DQFYSLYGTTAQREGGYHMTSETYEREFLHPDDATMVSREVARVLVTQKPNYTARLEHRI 424

Query: 519 ELLSDSV--LEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNE 560
                 V  +  + + L +       T+    +VT+  R E+AL +  E
Sbjct: 425 VRRDGEVRHIVVTYLLLRDTHGNPVKTIGANQDVTEHKRFEQALFQSRE 473


>gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1162

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 123/658 (18%), Positives = 252/658 (38%), Gaps = 82/658 (12%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              + K L      F+  F+     +      G  +  N +     +  G   ++    +
Sbjct: 300 VAERTKALRASEEQFRHSFEDASIGMAIVSLDGHWINVNSA---LCQIIGYSPEELSALT 356

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---------------IVRVLNS 285
            +         +  S A ++    T+ST +    + +                     N 
Sbjct: 357 FQDITYPDDLEVELSYA-QQLLAGTISTYQL-EKRYFHKQGHIVWILLNGSLVQDEQGNP 414

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLA 344
                   D++        L     I++N+   + +    +  + + NR +  ++     
Sbjct: 415 LHFIAQIQDITARKAAQKTLELQSIIMNNMAGGVCLVKAADLTIVYTNRKYDAMFGYLEG 474

Query: 345 FLATNP------------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            LA  P             +  +L+     ++  E           + V+   +     W
Sbjct: 475 ELAGQPVGILNYVDTQVTPDVSVLDIATQLDRDGEAK---------YEVHNRKKDGTLFW 525

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMF--ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
                  +H     +P  GT+++   +++T     E             +++    +   
Sbjct: 526 CR-----VHTSRFEHPEYGTVYVAVQQDVTELQLAEKALQATTNRLNFLLNYSPVVIFSC 580

Query: 451 GPDG----RIKLSN---------PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            PDG         N           F    K   N L     +  +    +  Y  +  +
Sbjct: 581 KPDGDYGATFISENIKDVLGYETREFLEDSKFWVNHL-HPDDVDQVFHGLANLYVNNYYF 639

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             +   +   D   + +   L L+ D     +  P+   + +   ++++D  +AE  L +
Sbjct: 640 HEYR--LRRSDGVYRWILNQLRLIRD----CAGKPV---EIVGYLIDISDRKQAELELRQ 690

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             EA   A++ K+ F+ ++S+ELR+PL +I+GFT L+  S   +L S   + ++ I+ S 
Sbjct: 691 AKEAAEAANQAKSVFLANMSHELRTPLNSILGFTQLM--SYENNLTSSLQERLQIINRSG 748

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+NDILDL+ +++G M LN S   L +LL  +++ +  K+   ++++ V  + +L
Sbjct: 749 RHLLDLINDILDLSKIESGRMTLNPSDFDLINLLTSIEEMLQVKVQSKSLQLIVERESEL 808

Query: 678 GSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIP 731
            +FV  D ++L Q+   +LSNA+ F+ +GS + L+   +  +       F V++ G  I 
Sbjct: 809 PNFVHTDEKKLYQVLVNLLSNALKFTQQGS-ITLRVRAEQKEKHSCRLCFEVEDTGVGIA 867

Query: 732 EDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 +F  FV         +G GLGL+I +  + L GG + + S+    +T +  I
Sbjct: 868 PTEIDKLFKVFVQAQAGNNLSQGTGLGLAISQKLVQLMGGQIQVQSTLNRGSTFSFEI 925


>gi|158121175|gb|ABW17001.1| two-component sensor histidine kinase [Bacillus subtilis]
          Length = 579

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 149/371 (40%), Gaps = 27/371 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++              I+++  G+ +    G I L N ++   +    N +        
Sbjct: 223 MEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHM-------- 274

Query: 483 IAATCSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                 R Y+++   +    ++      + ++  L      +     E   +P+      
Sbjct: 275 ----LRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI------ 324

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +   D  +    +       +K ++++  FV +VS+EL++P+T+I GFT+ L    +
Sbjct: 325 ---MGPDDEWKGIVLVFHDMTETKKLEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM 381

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                  S+++  I   S  L +LV D+LDL+ ++     L+  T     +L E++  + 
Sbjct: 382 ED-KEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFDPAKMLGEIETLLK 440

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E  I +++           D  RL Q+F  +++NA+ ++ +G +V +       D 
Sbjct: 441 HKADEKGISLQLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPRERDI 500

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V ++G  I ++    +F RF            G GLGL+IV+  I  H G + ++S 
Sbjct: 501 QIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSE 560

Query: 778 DEGVTTINCRI 788
               T     +
Sbjct: 561 PGRGTVFTVTL 571



 Score = 42.2 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 280 VRVLNSFGEA--GIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           +R  +  G A   +AID+ +     + Q      ++ N+   + + D   ++   NRS+ 
Sbjct: 205 IRRSDKLGHAMNSLAIDLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYA 264

Query: 337 ELWEIDLAFLATNPSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           + + I+   +     +D      +  L     + E    K  +  I    +  E      
Sbjct: 265 KQFHINPNHMLRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI 324

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             P+ +            G + +F ++T    LE 
Sbjct: 325 MGPDDEWK----------GIVLVFHDMTETKKLEQ 349


>gi|107022927|ref|YP_621254.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116686830|ref|YP_840077.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
 gi|105893116|gb|ABF76281.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116652545|gb|ABK13184.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
          Length = 768

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 104/501 (20%), Positives = 200/501 (39%), Gaps = 30/501 (5%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L  L   +   D N  L + N +  EL           P  D L        ++P
Sbjct: 128 QFEAVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAVGRPVRDVLRIVDHEGRRVP 187

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENL 419
                    +      +++ + +      +G  + ++  ++P G       G + +  + 
Sbjct: 188 TTP-----LDRALGGAEAT-SDRHWLQAGSGDRVPIVAVASPIGDADGNLDGAVLLLRD- 240

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
                 +       ++Q   ++   + +     DGRI   N A + ++  +E        
Sbjct: 241 ---AGADRARVDASRLQHAVVEASPDAIVGIDADGRIASWNAAAQRIFGYDEADARGRRF 297

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL----EYSIIPLPN 535
              IA    R    +D +D     +   +       G     + S      E       +
Sbjct: 298 DTLIARRWLRLNPLADAFDAMHEPVGPLELLCVRRDGRRFRATVSACPVQGEARACVTLS 357

Query: 536 AQTMLTFVNVTDSVRAERAL---TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                T       +RA+R+L    +  +    ++ +K+  +  VS+ELR+PL  I G+ +
Sbjct: 358 LTLHETGAQRRRDLRAQRSLQGARDARDQADTSNRLKDELLATVSHELRTPLNVIYGWIE 417

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+ +   +L   Q Q ++ I  S+  L  +V DILD +++  G ++L+ + + +  L +
Sbjct: 418 VLRNTGDHAL---QHQAIDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFS 474

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   +  T      I ++            D +RL Q+ S ++SNA+ F+  G +V +  
Sbjct: 475 DQVGTFQTAASSAGILLEFDCAASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGL 534

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
           ARD G  + +V + G  I  +    VF+ F          RRG+GLGLSIV     LHGG
Sbjct: 535 ARDGGHAVLTVADTGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGG 594

Query: 771 HVSISSSD-EGVTTINCRIPS 790
           +V+++S+  +  TT    +P+
Sbjct: 595 NVTVASAGRDRGTTFTVTLPA 615



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 81/275 (29%), Gaps = 21/275 (7%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT-ETEGIVFQKAIGESRKLFKEEIKK--- 250
           F+ +  +L   V   D  G + + N +  +           + + +  ++   E ++   
Sbjct: 129 FEAVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAVGRPVRDVLRIVDHEGRRVPT 188

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG--------IAIDVSKEITVN 302
             +  +            L+ G+     IV V +  G+A         +  D   +    
Sbjct: 189 TPLDRALGGAEATSDRHWLQAGSGDRVPIVAVASPIGDADGNLDGAVLLLRDAGADRARV 248

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           D     + ++     AI   D +  +   N +   ++  D A       +  +       
Sbjct: 249 DASRLQHAVVEASPDAIVGIDADGRIASWNAAAQRIFGYDEADARGRRFDTLIARRWLRL 308

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           N L +  +         ++++     +      +G+     V++ P  G       L++ 
Sbjct: 309 NPLADAFD---------AMHEPVGPLELLCVRRDGRRFRATVSACPVQGEARACVTLSLT 359

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           +               ++    +         R+K
Sbjct: 360 LHETGAQRRRDLRAQRSLQGARDARDQADTSNRLK 394


>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
 gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
          Length = 1761

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/708 (17%), Positives = 253/708 (35%), Gaps = 55/708 (7%)

Query: 122  HHYIKLSKATEKLRKE--GQSFDLVAETQNDCAIKIEGRVSGSCAFL---RILSLDGIYS 176
             H    ++   + R    G+   L A   +     +E    G        +      +  
Sbjct: 565  RHAALRTQFIAEGRDRKMGKGQTLNARKSDGSEFPVEI-SLGLLPVTDDGKRQVAATVRD 623

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTETEGIVFQ 234
               E  +  +++ +  S F+ L  ++   V+     ++  + + + +    T      F 
Sbjct: 624  MTVELEVA-QRIKDSESRFRGLVTNIPGAVYRTRIGESWVMEYISNNISDITGFPASDFI 682

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFC----ETVSTLEHGNNKSYKIVR-VLNSFGEA 289
            +    S      E      + +  E        E    ++H +   + +      S+G+ 
Sbjct: 683  ENSSRSFASLIIEQDLEATTRTIEEALLAQKSFEIQYRIKHRDGSIHWVHEKGKASYGDE 742

Query: 290  GIAI-------DVSKEITVNDQLTHTYEILHNLTVAIAIF--------DQNRYLQFHNRS 334
            G  +       D++      +++  + + L  +T +I              R   F + +
Sbjct: 743  GGVLWFDGSINDITSSKLAQEEIVQSQQQLETITESIPSTVYQLHWCSSGERTFTFLSSA 802

Query: 335  FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE-NIFSVYKSSETHKDTWH 393
             +         +  +             + + E L+ +T K       ++      +   
Sbjct: 803  CITTLGFHRDEVMNDFDLVAECIISEERSHIIEALSGQTSKGLQWTEEFRYRHPIGEIRW 862

Query: 394  LPNGQTLHVIVTSNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            L  G    +       G  IW     ++T +  ++ +            D+   G+    
Sbjct: 863  LQAGARGDLQA----DGCIIWNGYLMDITDRKQIDKELEDREAHFRALFDNAGIGIVNVD 918

Query: 452  PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
              G I   N  F    +T    L       +      R        DL      +   E 
Sbjct: 919  ERGNILDCNEQFSFYMQTGVAELKS-CSFFDFQHLDDREKAREVFADLTEGGSDNLLTEL 977

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKAD 566
            + L  + E +    ++ ++  L + Q  LT       N+T   +    L +  ++   A+
Sbjct: 978  RLLNQSGECI---WMDITLTKLQDPQGKLTSVVLSMANITSLKQLSEELKQAKDSADAAN 1034

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            + K+ F+ ++S+E+R+P+  IIG + L   ++   LN KQ  YV  I  +S  LL ++ND
Sbjct: 1035 QAKSDFLANMSHEIRTPMNAIIGMSQLCLQTE---LNRKQQNYVLKIDRASKSLLGIIND 1091

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
            ILD + ++AG + +      L+ LL ++    + K  +  + +       +      D  
Sbjct: 1092 ILDFSKIEAGKLDIESVPFQLDTLLEDLSDMFSVKATDKRLELLFAVAPNIPRQLQGDPL 1151

Query: 686  RLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            RL Q+   ++SNA+ F+ +G  ++    L+   D+    FSV++NG  + E+  + +F  
Sbjct: 1152 RLSQVLINLMSNAIKFTEQGEVLLSISQLERIEDDIVLRFSVRDNGIGLTEEQRERLFKS 1211

Query: 742  FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            F        R   G GLGL+I +  + L GG + + S     ++    
Sbjct: 1212 FSQADTSTTRKYGGTGLGLAISKQLVELMGGEIGVESQFGNGSSFYFS 1259



 Score = 44.5 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 47/403 (11%), Positives = 125/403 (31%), Gaps = 70/403 (17%)

Query: 95   IIGQLHQRIDIPQTD---TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ--- 148
            I   +      P +D       SF + +        ++  E+     +SF++    +   
Sbjct: 666  ISNNISDITGFPASDFIENSSRSFASLIIEQDLEATTRTIEEALLAQKSFEIQYRIKHRD 725

Query: 149  -NDCAIKIEGRVS----GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
             +   +  +G+ S    G   +      DG  +++  + L  +++       + + +S+ 
Sbjct: 726  GSIHWVHEKGKASYGDEGGVLW-----FDGSINDITSSKLAQEEIVQSQQQLETITESIP 780

Query: 204  FLV----WHRDQAGDILWANISY--------KKNTETEGIVFQKAIGESRKLFKEEIKKR 251
              V    W         + + +          +      +V +  I E R    E +  +
Sbjct: 781  STVYQLHWCSSGERTFTFLSSACITTLGFHRDEVMNDFDLVAECIISEERSHIIEALSGQ 840

Query: 252  MISSSALEKNFCETVSTLEHGNNKSYKI-----VRVLNSFGEAGIAIDVSKEITVNDQLT 306
                    + F         G  +  +      ++        G  +D++    ++ +L 
Sbjct: 841  TSKGLQWTEEFRYRHPI---GEIRWLQAGARGDLQADGCIIWNGYLMDITDRKQIDKELE 897

Query: 307  ----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                H   +  N  + I   D+   +   N  F    +  +A L +        +F    
Sbjct: 898  DREAHFRALFDNAGIGIVNVDERGNILDCNEQFSFYMQTGVAELKS----CSFFDF---- 949

Query: 363  NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----NGQTLHVIVT----SNPRG---G 411
                + L+ +     +F+      +      L     +G+ + + +T     +P+G    
Sbjct: 950  ----QHLDDREKAREVFADLTEGGSDNLLTELRLLNQSGECIWMDITLTKLQDPQGKLTS 1005

Query: 412  TIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
             +    N+T    L  +        +   + + + + ++S  +
Sbjct: 1006 VVLSMANITSLKQLSEELKQAKDSADAANQAKSDFLANMSHEI 1048



 Score = 41.5 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 63/161 (39%), Gaps = 15/161 (9%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           DV+++ +    +  +  +L +   A+ I +++  L F N    +L+  D   +     ++
Sbjct: 500 DVTEQFS---AVAWSNAVLESAPEAMLIVEESGQLVFTNSRCQQLFGYDKQQMLAMSVDE 556

Query: 354 ELLEFLRSANK------LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI-VTS 406
            + + +R  +       + E  + K  K    +  KS     D    P   +L ++ VT 
Sbjct: 557 LVPDGVRYRHAALRTQFIAEGRDRKMGKGQTLNARKS-----DGSEFPVEISLGLLPVTD 611

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           + +        ++TV++++  +           + ++   V
Sbjct: 612 DGKRQVAATVRDMTVELEVAQRIKDSESRFRGLVTNIPGAV 652


>gi|224539382|ref|ZP_03679921.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519002|gb|EEF88107.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 817

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/512 (20%), Positives = 222/512 (43%), Gaps = 27/512 (5%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N T  I    ++  L F NR F    E+      + 
Sbjct: 162 GYIQNITDIQKSRNDINLLTHAINNSTEDIFAAKEDGTLIFANRLFKLHHELGSTDDISQ 221

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI------ 403
               E+  + R+          + W++ I S+ +  +      + P  +   ++      
Sbjct: 222 LKIYEIGSYTRTL---------EGWQKMIASIKEGEKHQSFMVYNPLPRFPEILAYEGNA 272

Query: 404 --VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             VTS+   GTIW F  +++ ++  E +     ++  +T++HL  G+ V       K   
Sbjct: 273 YWVTSDEGVGTIWAFGRDISQRIRHEQQIKWFNQILDKTMEHLPAGIVVKDIRNNFKYLY 332

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAAT-CSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
               S  +      + G    +      +R     D           +  E +   G   
Sbjct: 333 RNRESYNRDVPMEEALGKDDFDFYPLEIAREKRRQDKDIATTGQEMHWIAEERDGHGNPL 392

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            L    ++       +   +    ++T+    +R L    E    +D++K++F+ ++S+E
Sbjct: 393 FLDKRKMKIESKDF-SPILLNIEWDITEMELMKRELMVAKEKAETSDQLKSAFLANMSHE 451

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+ ++  S+      ++ +Y   + A++  LL L+N+ILDL+ ++AGI++
Sbjct: 452 IRTPLNAIVGFSRIIAESEN---TEERKEYYNIVEANNERLLQLINEILDLSKIEAGIVE 508

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            + + + L+ L  E+  +   +    ++ ++     +     +D+ R+ Q+ S ++ NA 
Sbjct: 509 FSIAAVRLHPLCKEIHDAHVFRCPS-DVELRFDPSDEDILIDSDKNRIFQVISNLIGNAF 567

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            F++KGS +     R+    +F V + G+ I  +    VF RFV   +  Q  G GLGL+
Sbjct: 568 KFTTKGS-ISYGYHREGETIVFHVTDTGTGIAPEKIGKVFERFVKANNFAQ--GTGLGLA 624

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I ++ I   GG +S++S  E  TT    +P+K
Sbjct: 625 ICKTIIERLGGKISVTSELEKGTTFIFTLPAK 656



 Score = 41.5 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 105/313 (33%), Gaps = 34/313 (10%)

Query: 164 AFLRILSLDGIYSELAETTLK--------CKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
            ++R+ +      +    +L+         +K  N I++     ++    ++   + G +
Sbjct: 141 HYIRLKTFSRERDKDGNISLEGYIQNITDIQKSRNDINLLTHAINNSTEDIFAAKEDGTL 200

Query: 216 LWANISYKKNTE---TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE-------- 264
           ++AN  +K + E   T+ I   K           E  ++MI+S    +            
Sbjct: 201 IFANRLFKLHHELGSTDDISQLKIYEIGSYTRTLEGWQKMIASIKEGEKHQSFMVYNPLP 260

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIA 320
               +      +Y +              D+S+ I    Q+    +IL     +L   I 
Sbjct: 261 RFPEILAYEGNAYWVTSDEGVGTIWAFGRDISQRIRHEQQIKWFNQILDKTMEHLPAGIV 320

Query: 321 IFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDEL-LEFLRSANKLPEQLNWKTWKEN 377
           + D   N    + NR      ++ +         D   LE  R   +  +  +  T  + 
Sbjct: 321 VKDIRNNFKYLYRNRESYN-RDVPMEEALGKDDFDFYPLEIAREKRR--QDKDIATTGQE 377

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQ 436
           +  + +  + H +   L + + + +   S      +   E ++T  ++L  +   + K +
Sbjct: 378 MHWIAEERDGHGNPLFL-DKRKMKIE--SKDFSPILLNIEWDITE-MELMKRELMVAKEK 433

Query: 437 GETIDHLSEGVAV 449
            ET D L      
Sbjct: 434 AETSDQLKSAFLA 446


>gi|237712224|ref|ZP_04542705.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229453545|gb|EEO59266.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 730

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/550 (20%), Positives = 221/550 (40%), Gaps = 19/550 (3%)

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLT 306
           I   +  + A  +           G    Y+  +  L+      +  D+S+ +     L 
Sbjct: 50  IHNNLQKAIATGRGSTAHHELDVDGTLHYYENRIFPLDEEYVLIMCRDISERVATQQNLE 109

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L  ++ +I     +  L + NR F+E + +    L T    D  L    +  ++ 
Sbjct: 110 IFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKEE-LGTQKVYD--LPVSLNTKEIF 166

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDL 425
           ++   +         Y++  T      L   Q    ++  N     IW F +++T  +  
Sbjct: 167 DKRVQEIRDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQ-NQGEEMIWFFTQDITDVIKN 225

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             +   L  +    ++++   + V  P  D R    N AF S  K   ++          
Sbjct: 226 RDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGHIDFEVF 285

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLT 541
               +      D  +L        + +   +  T E      L+ +++PL       +  
Sbjct: 286 PEHENAEKFHRDDLELIRT-RERMEMQETYVTATGETRIVQTLK-TLVPLEGRAPLIIGI 343

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  I+GF+ L+    +  
Sbjct: 344 SWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM---TMAD 400

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             + +  Y + I+ +S ILL L+NDILDLA ++AG ++     + L +L   V +    +
Sbjct: 401 NAADEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDR 460

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    + + + +         D+ R++Q+ + +++NA+ F+ KG  +            F
Sbjct: 461 VQT-GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFKGE-IRFGFEVRKEYIDF 518

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  I E+  K +F RFV      Q  G GLGL+I    +   GG ++  S     
Sbjct: 519 YVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAICRVIVEKLGGEITAESKLNEG 576

Query: 782 TTINCRIPSK 791
           +T    IP K
Sbjct: 577 STFRFTIPYK 586



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 97/293 (33%), Gaps = 39/293 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           +      ++ +FK + D +   +      G +++AN  + +    +  +  + + +    
Sbjct: 100 ERVATQQNLEIFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKEELGTQKVYDLPVS 159

Query: 244 FK--EEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVL----NSFGEAGIAIDV 295
               E   KR+        NF         G    + +++   +              D+
Sbjct: 160 LNTKEIFDKRVQEIRDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQNQGEEMIWFFTQDI 219

Query: 296 SKEITVNDQLTH----TYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATN 349
           +  I   D+L         IL+N+ V + + D        + N++F    +I  +    +
Sbjct: 220 TDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGH 279

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIV--T 405
              +            PE  N + +  +   + ++ E  +  +T+    G+T  V    T
Sbjct: 280 IDFEVF----------PEHENAEKFHRDDLELIRTRERMEMQETYVTATGETRIVQTLKT 329

Query: 406 SNPRGG----TIWMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
             P  G     I +  ++T         V    K     +++   + ++S  +
Sbjct: 330 LVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEI 382


>gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 587

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/398 (22%), Positives = 173/398 (43%), Gaps = 27/398 (6%)

Query: 396 NGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPD 453
           +G+   + V S    G    +  ++  ++D +    +         +  + EGV V   D
Sbjct: 206 DGEYSRIPVASQDEIGALASVLNDMAERIDAQMHGLDAEKTRLDAILRGMGEGVMVASAD 265

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G I L NPAFR +       ++ G   + +   C     ++   DL A        E + 
Sbjct: 266 GAITLVNPAFRKM-----FAMTDGVEGKKLIEVCRNPDLQAAFHDL-ARCGGELSREIRI 319

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G + LL                T    + +  + +   A+      ++  +E++  FV
Sbjct: 320 QPGDVTLL----------------THWVPLAMDGAGQGVVAVFHDITDMKHVEEMRRDFV 363

Query: 574 QHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            +VS+ELR+P++ I G+ + L++   L S     +++VE I   +  L  L+NDIL L+ 
Sbjct: 364 ANVSHELRTPVSVIKGYAETLMQNDMLVSEPEHATRFVEIIRRHAERLTTLINDILTLSC 423

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++A    L  + + +   + +    +A +  E  I +       L   + D+ RL Q+  
Sbjct: 424 LEARNSALELNAMDVGTTIAKSCALLAPRAAEKKICLHNEVGNNLPRTLVDQGRLEQVLV 483

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQ 750
            ++ NA+ ++ +G T+ L A +       SV+++G  IP      +F RF         +
Sbjct: 484 NLIDNAVKYTPEGGTIRLFAEQGETFLRISVQDSGIGIPPRDLPRIFERFYRVDEGRSRE 543

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + G GLGL+I +  + LHGG ++++S+    +T +  +
Sbjct: 544 QGGTGLGLAIAKHIVQLHGGELTVTSTPGKGSTFSFTL 581



 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 87/306 (28%), Gaps = 30/306 (9%)

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN-----DQLTHTYEILHNLTVAIAIFDQN 325
            G      +         A +  D+++ I         + T    IL  +   + +   +
Sbjct: 206 DGEYSRIPVASQDEIGALASVLNDMAERIDAQMHGLDAEKTRLDAILRGMGEGVMVASAD 265

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK-S 384
             +   N +F +++ +                      KL E       +     + +  
Sbjct: 266 GAITLVNPAFRKMFAMTDG---------------VEGKKLIEVCRNPDLQAAFHDLARCG 310

Query: 385 SETHKDTWHLPNGQTL---HVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            E  ++    P   TL    V +  +  G G + +F ++T    +E      V       
Sbjct: 311 GELSREIRIQPGDVTLLTHWVPLAMDGAGQGVVAVFHDITDMKHVEEMRRDFVANVSH-- 368

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS-PGTHIRNIAATCSRYYNESDGWDL 499
             L   V+V        + N    S  +     +     H   +    +     S     
Sbjct: 369 -ELRTPVSVIKGYAETLMQNDMLVSEPEHATRFVEIIRRHAERLTTLINDILTLSCLEAR 427

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            +A+  +  D   ++  +  LL+    E  I  L N         + D  R E+ L    
Sbjct: 428 NSALELNAMDVGTTIAKSCALLAPRAAEKKIC-LHNEVGNNLPRTLVDQGRLEQVLVNLI 486

Query: 560 EALRKA 565
           +   K 
Sbjct: 487 DNAVKY 492


>gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 585

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 152/378 (40%), Gaps = 28/378 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            + ++   ++ET            I+++  G+ +    G I L N AF+           
Sbjct: 230 LQEISKAREMET------DRLHTLIENVGIGLILIDSRGYINLINRAFKE---------- 273

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              HI  +      Y       ++   +   F  E K  +  L  +      + +   P 
Sbjct: 274 -SFHIHPVDYLYRPYTEAFAHKEIVQLVNEIFMKETKIRKQLLLTIGIDRKHFEVYGAPI 332

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             T        D  +    +      L+K ++++  FV +VS+EL++P+T+I GF + L 
Sbjct: 333 IGT-------NDEWKGIVLVFHDITELKKLEQMRKDFVANVSHELKTPITSIKGFAETLL 385

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +         ++  I   S  L  LV D+LDL+ ++    +L+  T+ L DLL E+ 
Sbjct: 386 DGAMKD-EQTLEYFLSIIWKESERLQTLVQDLLDLSKIEQQGFRLHLETVDLADLLREIA 444

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                K  E  I   + +   +     D  R+ QIF  +++NA+ ++ KG  V L     
Sbjct: 445 VMFQQKSEEKGIDFYLHAPKSV-YMEGDANRIKQIFINLITNALTYTPKGGKVELMIEEK 503

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
             + +  VK+ G  I E     +F RF            G GLGL+IV+  +  H GH++
Sbjct: 504 EKEILVHVKDTGIGIDEQEIPRIFERFYRVDKARGRNSGGTGLGLAIVKHLVEAHHGHIT 563

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S+    TT     P +
Sbjct: 564 VKSTVGKGTTFTVHFPKQ 581



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 15/142 (10%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A ++ +     + +    + ++ N+ + + + D   Y+   NR+F E + I        
Sbjct: 226 LARNLQEISKAREMETDRLHTLIENVGIGLILIDSRGYINLINRAFKESFHIHPVDYLYR 285

Query: 350 PSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           P  +      +  L +   + E       ++ +         H + +  P      +I T
Sbjct: 286 PYTEAFAHKEIVQLVNEIFMKETKI----RKQLLLTIGIDRKHFEVYGAP------IIGT 335

Query: 406 SNPRGGTIWMFENLTVQVDLET 427
           ++   G + +F ++T    LE 
Sbjct: 336 NDEWKGIVLVFHDITELKKLEQ 357


>gi|83814352|ref|YP_446607.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83755746|gb|ABC43859.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 959

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/812 (14%), Positives = 288/812 (35%), Gaps = 65/812 (8%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
             + + G +A +     +    ++R R  LA +  E       +    +  + LL   + 
Sbjct: 163 SPLVLCGGMAMVAFVVGVVARWVLRVRRHLADQARELEEQRDRLEGHRAYTNRLLNATDD 222

Query: 82  LTIVWDGKDETPEIIGQ--LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ 139
           L    D      +      L       +    + + ++++      +  +A  ++ + G 
Sbjct: 223 LFFALD-PTGQFQWWNDRVLETTGLSDEDVGSVDALDHFVPAEREKQAKQAIRRVLQTGS 281

Query: 140 SF-DLVAETQNDCAI--KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
              ++     +  A+  +  G    +    R +   G    +AE   + ++L      F+
Sbjct: 282 GQVEVPLVADDGVAVPYEFVGNPVENLEGERQIVCVG--RNVAERKRRERELRESERRFQ 339

Query: 197 VLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQKAIGESRKLFKEEIKKR 251
            + +  + L       G     N +          +  G  F +      +  +  ++++
Sbjct: 340 AMLNDPNILAGVLSPDGTFQKVNDTALGYIEATRADVLGRPFWETPWWETEN-RSAVREK 398

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAG----IAIDVSKEITVNDQL 305
           +   +  E    E       G  ++    +  V    GE       A D+++     + L
Sbjct: 399 VERVAEGEYVRFEAEHVTPDGEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRREEAL 458

Query: 306 T----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                    ++ N    + +FD++          +    +  + +     +D     L  
Sbjct: 459 QVAEGRYRALIENFPGGVFLFDEDLQYTLAGGRELRDAGLSPSDVEGGGPHDIFPAALAE 518

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
              +        ++  +     + E   D     N +TL V   S      + + +++T 
Sbjct: 519 ELDM-------YFRRALNGEKNAFEQTMDGRRYFN-RTLPVRDESGTVIAGMAVAQDITE 570

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFR--------SLWKTEEN 472
           +   + K      +     +  + G   +  D G + L++ A+R         +     +
Sbjct: 571 ERRRKEKLERKNDLFQRAQEIANVGGWEYDLDTGALTLTDQAYRIHGVSPGAKMTLERSH 630

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSII 531
            L              R   +   +D+ A +IT   +E+    +G  +      +     
Sbjct: 631 GLYHPNDRWEAEEAFRRAAEDGVPYDVEARLITDAGEEKWIRTRGAPQQDDGRTVRVR-- 688

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPL 584
                    T  ++TD    E+AL         A         +K++F+ ++S+E+R+PL
Sbjct: 689 --------GTIQDITDQKEREQALRTAKADAEAARQEAEEASRLKSAFLANISHEIRTPL 740

Query: 585 TNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           T+IIGF +L+  +   L   +S    Y   I  S   LL  +  +L+L+ + +G MKL  
Sbjct: 741 TSIIGFAELIGSEAGALDLSDSPLPGYATMIERSGKRLLETLEGVLNLSKLQSGQMKLET 800

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + + LN+ +    Q +  K  E  +R+++ +   +     D   +  +   ++SNA+ ++
Sbjct: 801 APVDLNEQIRWAVQELRPKAEEKGVRLQLETGCAVAE--GDEGGIQIVIRNLVSNAIKYT 858

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
            +G  + +++ ++    +  V++ G  +   + +S+F  F   +     +  G G+GL++
Sbjct: 859 EQGGRIWVRSFQNEDRAVLEVEDTGIGMDPAVAESLFEPFRQASEGLNREYEGTGVGLAV 918

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               +    G + + +     T     +P+ E
Sbjct: 919 TNKAVAQMDGSIEVDTEKGEGTRFTIHLPASE 950


>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 866

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 155/372 (41%), Gaps = 9/372 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E             ++ +  G+ V   +G I+L NPA   ++      +  G ++  +
Sbjct: 190 QSENALRDSESKNRAILETMIGGIVVIDSNGIIELFNPAAEEMFGYLAPEV-IGYNVNRL 248

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML--- 540
                   ++    +             + +    +  S   +E ++  +     +    
Sbjct: 249 MPEPYHSEHDQYLNNYLTTSQRKIIGIGREVVAKRKDGSFFPIELAVSEMYEGNALKFVG 308

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +++T+   AE AL +  E   +++ +K+ F+  +S+ELR+PLT ++G   LL      
Sbjct: 309 RIIDITERKAAEFALIKAKEQAEESNRLKSEFLNVISHELRTPLTIMLGNLPLLTDPNDL 368

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               + +     I  S   LL L+ND+LDL+ ++AG M +    + +  L  +V  SI  
Sbjct: 369 PDAEEIADIATDIEDSGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAALTQDVITSIQV 428

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             HE N+ I+   D       AD  RL QI   +L NA+ F+ +   + +K         
Sbjct: 429 MAHEKNLTIETEIDD--IEVFADPIRLKQILLNLLGNAIKFT-ENGFIKVKIKPMAHQVC 485

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I E     +F+ F  +     RR  G GLGL+I +  + LH G +S+ S  
Sbjct: 486 FFVEDCGCGIDEKDVPFIFDAFRQSDSSAARRADGTGLGLAITKKLVELHNGKISVQSLL 545

Query: 779 EGVTTINCRIPS 790
              +  +  IP 
Sbjct: 546 GKGSVFSFSIPK 557



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 54/166 (32%), Gaps = 31/166 (18%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  + D  +    IL  +   I + D N  ++  N +  E++     +LA       +  
Sbjct: 192 ENALRDSESKNRAILETMIGGIVVIDSNGIIELFNPAAEEMFG----YLAPEVIGYNV-- 245

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-------LPNGQTLHVI--VTSNP 408
                  +PE   + +  +   + Y ++   K             +G    +   V+   
Sbjct: 246 ----NRLMPEP--YHSEHDQYLNNYLTTSQRKIIGIGREVVAKRKDGSFFPIELAVSEMY 299

Query: 409 RGG---TIWMFENLTVQVDLE-------TKYNTLVKVQGETIDHLS 444
            G     +    ++T +   E        +     +++ E ++ +S
Sbjct: 300 EGNALKFVGRIIDITERKAAEFALIKAKEQAEESNRLKSEFLNVIS 345


>gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 1053

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/668 (17%), Positives = 254/668 (38%), Gaps = 78/668 (11%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSL-----DFLVWHRDQAGDILWANISYKK 224
            +  ++ ++ E       L      F+VLF+++        +    + G     N S   
Sbjct: 272 EIVALFDDVTERKQIEDSLRESEERFRVLFENIRDGVFVHPMITPSEPGKFAMVNPS--- 328

Query: 225 NTETEGIVFQKAIGESRKLFKEE------IKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
             +  G   ++ +G   +   +       I + M           E V     GN    +
Sbjct: 329 ACDILGYTQEELLGMGPRELDDAESSVTYIPEAMKRLMEDGCVLFEAVQRDRKGNRIPVE 388

Query: 279 I----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--------AIFDQNR 326
           +    V +           D++      ++L  + + L ++   +           D + 
Sbjct: 389 VNANIVELSGRPYIVSSVRDITLRKQHENKLLESTQFLKSIYDGVNNSVFVVDVQQDGSY 448

Query: 327 YLQFHNR--------SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
             +  NR           E+       +   P  + ++    +  +    + ++      
Sbjct: 449 RYKGINRMHEILTGIKNEEITGKSPDEIIDAPFAESVIRRYDACIQSGSTIQYE-----E 503

Query: 379 FSVYKSSETHKDTWHLPN----GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
              +K  ET+ +T   P     G    +I TS           ++T +   E +   L  
Sbjct: 504 LLPFKGRETYWETVLTPVRDNVGHIYRIIGTST----------DITKRKISEQRLRKL-- 551

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNE 493
                ++     V +    G I+  NP F  L        +    +I     T    + E
Sbjct: 552 --SVAVEQSPAVVVITDYMGNIEYVNPKFTQLTGYTVREAVGNNPNILQSGLTPRETFYE 609

Query: 494 SDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTD 547
                L   +    F + +K+    +E          I P+ N +  +T       ++T+
Sbjct: 610 LWDTILSGGVWHGEFYNRKKNGDIYIE-------SAVISPIFNKEGSITNFVAVKEDITE 662

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +    L    E   ++D +K +F+ ++S+E+R+P+  I+GF++LLK   L     +Q+
Sbjct: 663 KKKLWSELIAAKEKAEESDRLKTAFLANISHEIRTPMNGILGFSELLKEPHLSG--EEQT 720

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I+ S   +L+L+N+++D++ +++G   L  +   +N L++++      +  +  +
Sbjct: 721 EYINLINQSGQRMLHLINELVDISRIESGDTFLQITETSINRLMHDIYAFFRPEAAKKGL 780

Query: 668 RIKVIS--DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
             + I            D  ++ QI + ++ NA+ F+++GS V  +    N    F V +
Sbjct: 781 LFECIVGLSDLFSVIDTDSSKVNQILTNLVQNALKFTTEGS-VDFRYTLKNDCLEFYVTD 839

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G+ IP +M + +F+RF    +    +  G GLGLSI +++I + GG + + S +     
Sbjct: 840 SGACIPSEMKEKIFDRFRQVDNSLTRRYEGAGLGLSISKAYIEMLGGKIWVESIEGRGNR 899

Query: 784 INCRIPSK 791
               +P K
Sbjct: 900 FVFTLPYK 907



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 106/310 (34%), Gaps = 41/310 (13%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQ--NRY-- 327
            Y I       G   I  D+++    E  + +       ++ N+   +A++D   +    
Sbjct: 135 LYPINSADLLLGFTLIVRDITEWKKSEKQIQESDNRYAALIENIDTGVAVYDAVDDGRDF 194

Query: 328 -LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ--LNWKTWKENIFSVYKS 384
            L+  N +   +  +  A +               +  LP      WKT +    + +  
Sbjct: 195 ILKALNPAAERIVHLTGAQVVGKTLLTLFPNM--GSTVLPAALCRVWKTGRTEHLAPFYY 252

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +  +  W           +   P G  + +F+++T +  +E       +      +++ 
Sbjct: 253 QDDIRQGWR-------ENHIYKIPSGEIVALFDDVTERKQIEDSLRESEERFRVLFENIR 305

Query: 445 EGVAVF-----GPDGRIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNE----- 493
           +GV V         G+  + NP+   +    +E  L  G    + A +   Y  E     
Sbjct: 306 DGVFVHPMITPSEPGKFAMVNPSACDILGYTQEELLGMGPRELDDAESSVTYIPEAMKRL 365

Query: 494 -SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
             DG  LF A+       R  ++     ++ +++E S  P      + +  ++T   + E
Sbjct: 366 MEDGCVLFEAVQRDRKGNRIPVE-----VNANIVELSGRPY----IVSSVRDITLRKQHE 416

Query: 553 RALTEKNEAL 562
             L E  + L
Sbjct: 417 NKLLESTQFL 426


>gi|291485343|dbj|BAI86418.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 579

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 148/371 (39%), Gaps = 27/371 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++              I+++  G+ +    G I L N ++   +    N +        
Sbjct: 223 MEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHM-------- 274

Query: 483 IAATCSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                 R Y+++   +    ++      + ++  L      +     E   +P+      
Sbjct: 275 ----LRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI------ 324

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +   D  +    +       +K ++++  FV +VS+EL++P+T+I GFT+ L    +
Sbjct: 325 ---MGPDDEWKGIVLVFHDMTETKKLEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM 381

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                  S+++  I   S  L +LV D+LDL+ ++     L+  T     +L E++  + 
Sbjct: 382 ED-KEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLVEIETLLK 440

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E  I + +           D  RL Q+F  +++NA+ ++ +G +V +       D 
Sbjct: 441 HKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDI 500

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V ++G  I ++    +F RF            G GLGL+IV+  I  H G + ++S 
Sbjct: 501 QIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSE 560

Query: 778 DEGVTTINCRI 788
               T     +
Sbjct: 561 PGRGTVFTVTL 571



 Score = 42.6 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 280 VRVLNSFGEA--GIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           +R  +  G A   +AID+ +     + Q      ++ N+   + + D   ++   NRS+ 
Sbjct: 205 IRRSDKLGHAMNSLAIDLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYA 264

Query: 337 ELWEIDLAFLATNPSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           + + I+   +     +D      +  L     + E    K  +  I    +  E      
Sbjct: 265 KQFHINPNHMLRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI 324

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             P+ +            G + +F ++T    LE 
Sbjct: 325 MGPDDEWK----------GIVLVFHDMTETKKLEQ 349


>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 1318

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 167/393 (42%), Gaps = 29/393 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N+ +Q   E K     ++  E ++     +    P G+    N  F  L      
Sbjct: 450 IQLSQNIELQRKAEQKVLEQSQLNQEILNATPNPMYCLSPQGKYLTVNAKFSELCGLPMQ 509

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +        I  T  + +++ D    F+        ++ S    L LL D  L+   + 
Sbjct: 510 EI--------IGKTPQQVFSQQDASQCFSETHQQLILQQGSKNYELSLL-DQHLQTRDML 560

Query: 533 LPNAQTMLTFV----------NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +  A    +            ++T+    E  L +  E        K  F+ ++S+E+R+
Sbjct: 561 VCEASFNNSHGKVSGIVGILLDLTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRT 620

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  I+G   L   ++   L+  Q +Y+  I+ S+  LL ++NDILD + ++ G + +  
Sbjct: 621 PMNGILGMVHLALNTE---LDPAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIET 677

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
               L+++ + +   I+ K  E  I   +  D ++ +  + D  R+ Q+   +  NA+ F
Sbjct: 678 IDFSLDEVFDNLTNVISLKAQEKKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKF 737

Query: 702 SSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           + +G  V+   ++   +    + FSVK+ G  I ++    +F+ F        R   G G
Sbjct: 738 TEQGEVVVAVRIELLTERDVVLHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTG 797

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSI +  + L GG +S+SS+    +T    I
Sbjct: 798 LGLSISKQLVELMGGQLSVSSTLGAGSTFAFTI 830


>gi|170741016|ref|YP_001769671.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168195290|gb|ACA17237.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 927

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 173/378 (45%), Gaps = 11/378 (2%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++  E ++  L  +  + +  + EG A++  D R+ ++N  +  +   +    + G   
Sbjct: 260 ERLTREAEHQRL--ILEDAVACMQEGFALYDRDDRLVMANARYSEMLMGQSAAAAMGLPF 317

Query: 481 RNIAATCSRYYNESDGW---DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +    +   +ESD     D  A I     + R+S   T   +    L+ +     +  
Sbjct: 318 ETLIQQVAARRDESDAEADLDHDAWIAQRLAEHRRSGSTTETRVRGRWLQIAKHRTHDGG 377

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+   +++TD  + E  L +      +A+++K+ F+ ++S+ELR+PL  IIG++ +L+  
Sbjct: 378 TVTLVMDITDLKQREIELDQARAEAERANQVKSEFLANMSHELRTPLNAIIGYSQMLRED 437

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N      +  I  +   LL+L+NDILDL+ ++AG M +    I + +LL +V+  
Sbjct: 438 AADDGNDGAVADLTKIEGAGKHLLDLINDILDLSKIEAGKMDVFLEEINIPELLEDVRLL 497

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           I      N+ R+ V         V D  +L Q    +LSNA  F+ KG  + L    D  
Sbjct: 498 IEPVAARNDNRLVVACAAGASRMVTDVTKLKQSLLNLLSNAAKFT-KGGLLTLSVDPDPD 556

Query: 717 --GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
             G+  F+V + G  +  +    +F  F    +   R   G GLGL+I  SF  + GG +
Sbjct: 557 RAGNLCFAVSDTGIGLSPEQVGRLFQAFQQADNSTTRKFGGTGLGLAITRSFARMLGGDI 616

Query: 773 SISSSDEGVTTINCRIPS 790
           +++S+    +T    +P+
Sbjct: 617 AVTSALGAGSTFVITLPA 634



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
           ++++ S +        V   E  + +   IVRV+     A      ++   +  +  H  
Sbjct: 216 RQVVKSLSAISEGRFDVPLPETRDAEIRGIVRVIALLRTA-----QAERERLTREAEHQR 270

Query: 310 EILHN----LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL---RSA 362
            IL +    +    A++D++  L   N  + E+     A  A     + L++ +   R  
Sbjct: 271 LILEDAVACMQEGFALYDRDDRLVMANARYSEMLMGQSAAAAMGLPFETLIQQVAARRDE 330

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           +     L+   W     + ++ S +  +T     G+ L +       GGT+ +  ++T  
Sbjct: 331 SDAEADLDHDAWIAQRLAEHRRSGSTTETRVR--GRWLQIAKHRTHDGGTVTLVMDITDL 388

Query: 423 VDLETKYN-------TLVKVQGETIDHLS 444
              E + +          +V+ E + ++S
Sbjct: 389 KQREIELDQARAEAERANQVKSEFLANMS 417


>gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1375

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 134/671 (19%), Positives = 240/671 (35%), Gaps = 77/671 (11%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANISYKKNT 226
            I  L  +  ++AE     + L +     +++ D+  D+  W R   G  LW + S K   
Sbjct: 586  ITLLADLAWDIAEHKKAEESLRSSEERLRIISDNTYDWEYW-RAPDGSYLWVSPSCK--- 641

Query: 227  ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE----HGNNKSYKIVRV 282
               G   +   G++  L       R I        + E V  ++          ++IV+ 
Sbjct: 642  TVSGYSPEDFTGDAATLI------RNIVHPDDHDIWAEHVKVVDSYNPDHQELDFRIVKP 695

Query: 283  LNSFGEAGIA------------------IDVSK----EITVNDQLTHTYEILHNLTVAIA 320
                   G                     D ++    E  + +       +     + I 
Sbjct: 696  TGEVVWIGHTCKPIFSDDGLFLGRRGCNRDTTERKRSEEAIRESEERYRLLFDQSPIGIV 755

Query: 321  IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
             FD    +   N  F E+       L       +L +      KL E +N  T       
Sbjct: 756  NFDNVGTIFDLNSKFAEIIGAPKDKLIGLNMPKDLTD-----LKLIEAVN--TALAGTLG 808

Query: 381  VYKSSETHKDTWHLPNGQTLHVIVTSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQGE 438
            +++ + T          + +   + +      G + + E++T +   E           E
Sbjct: 809  IFEGNYTSVTGRKTTPVRCMFKGIFAQDGNCLGGLAIVEDITERKQAEEVLRERELFLLE 868

Query: 439  TIDHLSEGVAVFGPDGRIKLS----NPAFRSLWKTEEN-----RLSPGTHIRNIAATCSR 489
            T      G      +          N         + +            +  I     +
Sbjct: 869  TQRIARVGGWKANIETNFLFWTDEVNRIIEMPTGYKPSLSEGLSFYAPEFLPEIREMLKK 928

Query: 490  YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              NE    +L   +IT     R + + T       ++E        +  + TF ++ +  
Sbjct: 929  VLNEGSSAELECEVITG----RGTRKWTHLRAVGRIVE-----KGQSLVLGTFQDIDERK 979

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            + E  L         A + K+ F+ ++S+E+R+PL  ++G   LL+++   S +++Q +Y
Sbjct: 980  KVELELNNARLKAEAASKAKSEFLANMSHEIRTPLNGVLGMLQLLEST---SKDAEQDEY 1036

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +E    SST L  L+ DILDL+ ++AG M L  +     DL           + E  +++
Sbjct: 1037 IEAAKKSSTRLTRLLADILDLSKIEAGKMILEEADFSFVDLKESTLGLFELAVKEKGLKL 1096

Query: 670  KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFS 722
              + D  L +  V D+ RL QI   ++ NA+ F+  G  V ++A        D    +F 
Sbjct: 1097 DFVIDELLPARLVGDQIRLQQILFNLVGNAIKFTETGD-VRVEACHLPCSNDDIQRVLFI 1155

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  I + M   VF  F        RR  G GLGLSIV   +   GG ++I S++  
Sbjct: 1156 VSDTGIGIAQGMIAQVFEPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGGSLAIDSTEGT 1215

Query: 781  VTTINCRIPSK 791
             TT    +P K
Sbjct: 1216 GTTFYLSLPLK 1226



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 108/335 (32%), Gaps = 33/335 (9%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV-FQK 235
           E        ++L    ++ + + D++   ++ +D+       N + +K    +      K
Sbjct: 180 EETRRVEAERELQRRANMLQGIIDAIPSPIFAKDEDLRYTTCNTALEKLLGAKPASLLGK 239

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-------VRVLNSF-G 287
           ++ +     + E+  RM      +    E    + +       I          LN   G
Sbjct: 240 SVFDIYPRAQAEVYDRMDRELLQQGGVQEYEGHMANAEGSLRNILFHKAKCHDFLNDACG 299

Query: 288 EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             G+  D+++     D L  + E    I+      I   D + +  F N +  ++    +
Sbjct: 300 LVGVMTDITERKLTEDALKMSEERYRLIIDTANEGIWSMDADYHTAFVNSAMAKMLGYSV 359

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             +     +D   +         E + +   +  +       E ++  +   +G  L  +
Sbjct: 360 EEMLGKRVDDFFFD---------EDMVFHAQRMKVRQSG-GDEVYERRFKRKDGSQLWTL 409

Query: 404 VTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           V++           G+  MF ++T +   E      +++         E + +   D   
Sbjct: 410 VSAKALKDSGGSFAGSFAMFTDITDRKRAENIIQARLRLMQLAASCSLEELLIATVDEAE 469

Query: 457 KLSNPA---FRSLWKTEENRLSPGTHIRNIAATCS 488
            L+N     +  L + ++  L      R I   C 
Sbjct: 470 VLTNSKVGFYHYLDEDQKTLLLQAWSTRTIREMCQ 504



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 63/460 (13%), Positives = 140/460 (30%), Gaps = 70/460 (15%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           L G+ +++ E  L    L      ++++ D+ +  +W  D      + N +     +  G
Sbjct: 300 LVGVMTDITERKLTEDALKMSEERYRLIIDTANEGIWSMDADYHTAFVNSA---MAKMLG 356

Query: 231 IVFQKAIGESRK--LFKEEI---KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
              ++ +G+      F E++    +RM    +      E     + G+     +      
Sbjct: 357 YSVEEMLGKRVDDFFFDEDMVFHAQRMKVRQSGGDEVYERRFKRKDGSQLWTLVSAKALK 416

Query: 286 FGEAGIA------IDVSKEITVNDQLTHTYEILHNLTVA-------IAIFDQNRYLQFHN 332
                 A       D++      + +      L  L  +       IA  D+   L    
Sbjct: 417 DSGGSFAGSFAMFTDITDRKRAENIIQARLR-LMQLAASCSLEELLIATVDEAEVLTNSK 475

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN---WKTWKENIFSV-------Y 382
             F    + D   L     +   +  +  A  +    +      W + I S        Y
Sbjct: 476 VGFYHYLDEDQKTLLLQAWSTRTIREMCQAEGIGLHYDVAKAGVWVDCILSRQAVIHNDY 535

Query: 383 KSSETHKDTW---HLPNGQTLHVIVTSNPRGGTIW----------------------MFE 417
           ++  THK      H P  + L V V    +   I                       +  
Sbjct: 536 EAL-THKKGMPEGHPPVIRELVVPVFRQNQIVAILGVGNKPIDYDNADIEAITLLADLAW 594

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++      E    +  +      D+  +      PDG     +P+ +++        +  
Sbjct: 595 DIAEHKKAEESLRSSEERLRIISDNTYDWEYWRAPDGSYLWVSPSCKTVSGYSPEDFTGD 654

Query: 478 --THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPL 533
             T IRNI      + ++ D W     ++ S++ + + L   +   +  V+    +  P+
Sbjct: 655 AATLIRNIV-----HPDDHDIWAEHVKVVDSYNPDHQELDFRIVKPTGEVVWIGHTCKPI 709

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            +   +       +    ER    ++E   +  E +   +
Sbjct: 710 FSDDGLFLGRRGCNRDTTERK---RSEEAIRESEERYRLL 746



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 27/301 (8%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            ++  I +  ++   +  N     LW+I +  +        L  FL     + E  + + 
Sbjct: 70  QISAGIELTGKSHACRCAN----GLWDIGIPVMVRGEQVATL--FLGQFFYVGENPDIEF 123

Query: 374 WKENI----------FSVYKSSETHKDTW---HLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           ++E                      +  W    L   Q     + +      I  FE  T
Sbjct: 124 FREQASKYGFEENAYLEALARVPVCEKAWVDDMLAYNQAFADFIGNLAESHLI-QFEEET 182

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +V+ E +      +    ID +   +     D R    N A   L   +   L   +  
Sbjct: 183 RRVEAERELQRRANMLQGIIDAIPSPIFAKDEDLRYTTCNTALEKLLGAKPASLLGKSVF 242

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  +  Y+  D   L    +  ++    + +G+L  +     +           + 
Sbjct: 243 DIYPRAQAEVYDRMDRELLQQGGVQEYEGHMANAEGSLRNILFHKAKCHDFLNDACGLVG 302

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS-----PLTNIIGFT--DL 593
              ++T+    E AL    E  R   +  N  +  +  +  +      +  ++G++  ++
Sbjct: 303 VMTDITERKLTEDALKMSEERYRLIIDTANEGIWSMDADYHTAFVNSAMAKMLGYSVEEM 362

Query: 594 L 594
           L
Sbjct: 363 L 363



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 34/218 (15%)

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           Y    +      A +A D+++     + L  + E L  ++               N    
Sbjct: 578 YDNADIEAITLLADLAWDIAEHKKAEESLRSSEERLRIISD--------------NTYDW 623

Query: 337 ELWEI-DLAFLATNPSNDELLEFLRSA---------NKLPEQLNWKTWKENIFSVYKSSE 386
           E W   D ++L  +PS   +  +               +    +   W E++  V   + 
Sbjct: 624 EYWRAPDGSYLWVSPSCKTVSGYSPEDFTGDAATLIRNIVHPDDHDIWAEHVKVVDSYNP 683

Query: 387 THKDTWHL---PNGQTLHVIVTSNPRGGTIWMF-------ENLTVQVDLETKYNTLVKVQ 436
            H++       P G+ + +  T  P      +F        + T +   E       +  
Sbjct: 684 DHQELDFRIVKPTGEVVWIGHTCKPIFSDDGLFLGRRGCNRDTTERKRSEEAIRESEERY 743

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
               D    G+  F   G I   N  F  +    +++L
Sbjct: 744 RLLFDQSPIGIVNFDNVGTIFDLNSKFAEIIGAPKDKL 781


>gi|237726370|ref|ZP_04556851.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|265751928|ref|ZP_06087721.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|229434896|gb|EEO44973.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|263236720|gb|EEZ22190.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 781

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/550 (20%), Positives = 221/550 (40%), Gaps = 19/550 (3%)

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLT 306
           I   +  + A  +           G    Y+  +  L+      +  D+S+ +     L 
Sbjct: 101 IHNNLQKAIATGRGSTAHHELDVDGTLHYYENRIFPLDEEYVLIMCRDISERVATQQNLE 160

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L  ++ +I     +  L + NR F+E + +    L T    D  L    +  ++ 
Sbjct: 161 IFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKEE-LGTQKVYD--LPVSLNTKEIF 217

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDL 425
           ++   +         Y++  T      L   Q    ++  N     IW F +++T  +  
Sbjct: 218 DKRVQEIRDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQ-NQGEEMIWFFTQDITDVIKN 276

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             +   L  +    ++++   + V  P  D R    N AF S  K   ++          
Sbjct: 277 RDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGHIDFEVF 336

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLT 541
               +      D  +L        + +   +  T E      L+ +++PL       +  
Sbjct: 337 PEHENAEKFHRDDLELIRT-RERMEMQETYVTATGETRIVQTLK-TLVPLEGRAPLIIGI 394

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  I+GF+ L+    +  
Sbjct: 395 SWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM---TMAD 451

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             + +  Y + I+ +S ILL L+NDILDLA ++AG ++     + L +L   V +    +
Sbjct: 452 NAADEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDR 511

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    + + + +         D+ R++Q+ + +++NA+ F+ KG  +            F
Sbjct: 512 VQT-GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFKGE-IRFGFEVRKEYIDF 569

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  I E+  K +F RFV      Q  G GLGL+I    +   GG ++  S     
Sbjct: 570 YVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAICRVIVEKLGGEITAESKLNEG 627

Query: 782 TTINCRIPSK 791
           +T    IP K
Sbjct: 628 STFRFTIPYK 637



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 97/293 (33%), Gaps = 39/293 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           +      ++ +FK + D +   +      G +++AN  + +    +  +  + + +    
Sbjct: 151 ERVATQQNLEIFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKEELGTQKVYDLPVS 210

Query: 244 FK--EEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVL----NSFGEAGIAIDV 295
               E   KR+        NF         G    + +++   +              D+
Sbjct: 211 LNTKEIFDKRVQEIRDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQNQGEEMIWFFTQDI 270

Query: 296 SKEITVNDQLTH----TYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATN 349
           +  I   D+L         IL+N+ V + + D        + N++F    +I  +    +
Sbjct: 271 TDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGH 330

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIV--T 405
              +            PE  N + +  +   + ++ E  +  +T+    G+T  V    T
Sbjct: 331 IDFEVF----------PEHENAEKFHRDDLELIRTRERMEMQETYVTATGETRIVQTLKT 380

Query: 406 SNPRGG----TIWMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
             P  G     I +  ++T         V    K     +++   + ++S  +
Sbjct: 381 LVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEI 433



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 57/172 (33%), Gaps = 23/172 (13%)

Query: 306 THTYEILHNLTVAIAIFDQN--RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
            +   IL +L   + +F+          N                  SN++    +R  +
Sbjct: 43  KYAVRILDSLPDMLTVFNHEETGIEVVSN----------EETNHVGVSNNDFKG-MRMQD 91

Query: 364 KLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQT--LHVIVTSNPRGGTIWMFENL 419
            +P++   N     +   +  + S  H +     +G        +        + M  ++
Sbjct: 92  MVPKEAYHNIHNNLQKAIATGRGSTAHHEL--DVDGTLHYYENRIFPLDEEYVLIMCRDI 149

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           + +V  +      +++    +D +S+ +     DG +  +N  F   +  +E
Sbjct: 150 SERVATQQN----LEIFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKE 197


>gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
            autotrophicum HRM2]
 gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
            autotrophicum HRM2]
          Length = 1316

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 130/698 (18%), Positives = 248/698 (35%), Gaps = 79/698 (11%)

Query: 143  LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
            +   +++   I++E RV                  L   T    K+     +F   F + 
Sbjct: 339  IPVISKSGRYIQVETRVHPGS--------WDDRPALFCVTKDVTKIRETEELFSKAFHAS 390

Query: 203  DFLVWHRDQAGDI-LWANISYKKNTETEGIVFQKAIGE---SRKLFKEEIKKRMISSSAL 258
              L+   +  G + +  N ++    ET G    +AIG+      LF     +  ++S   
Sbjct: 391  ASLMGISEIDGGLFIDVNRAF---VETSGYTRNEAIGKTSVELGLFPNPEDRNRVASMVK 447

Query: 259  EKNFCETVSTLEH---GNNKS--YKIVR--VLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
            E  F + +        G+ K   +   R  V  +        D++   +  D L    E 
Sbjct: 448  ESGFIKNMEITIRTKIGDKKFGLFSATRIDVNGNPCLLTTLTDITDRKSAEDALRENKER 507

Query: 312  LH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
            L     + ++A   +D      + +     L  +D     T  SN  L +F+ + +  P+
Sbjct: 508  LDLALESASMAPWHWDTMEKKLYLDSKACLLLGLD-----TERSNGTLQDFIDAVH--PD 560

Query: 368  QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTI----WMFENLT 420
                     +  +   +   H+     P+G T ++     P     G +     +  +++
Sbjct: 561  DRARLRQARDRTTARGTFYEHEFRVVWPDGSTHYITAHGKPVHNSSGVMTKIHGLIGDIS 620

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +   +  +    +     I   + G   +       + N  +  +       L P    
Sbjct: 621  KRKIAQQNFEDERQRLANVIKGTNTGTWEWNVQTGETVYNKRWAEILGYTLEELEPAD-- 678

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLSDSVLEYS-----IIPL 533
                +T +R  +  D       ++  F  E     +Q  +       +        +   
Sbjct: 679  ---VSTWNRLTHPQDLEKSDEMLLKHFTGEIPYYDIQCRMRHKRGHWVWVHDRGQVMTWT 735

Query: 534  PNAQTMLTFVNVTDSVRA---ERALTEKNEALRKA--------------DEIKNSFVQHV 576
             + + ++ F    D  +A   E+ L   N  L  A              +  K  F+ ++
Sbjct: 736  ADGKPLMMFGTHMDINQAKQVEQELMATNFQLEDAMARANQMATEAELANLAKGEFLANM 795

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+E+R+P+  IIG T LL  ++   L  +Q +Y   + AS   LL ++N+ILD + ++AG
Sbjct: 796  SHEIRTPMNGIIGMTGLLMDTQ---LTDEQRRYARIVQASGESLLRIINEILDFSKIEAG 852

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
             + L      L D  + +   +A + HE  I      D  +      D  RL QI + + 
Sbjct: 853  KLDLETIDFNLQDFCDYLTPPLAMQAHEQGIEFICTLDPDVPLGLRGDSGRLGQILTNLA 912

Query: 696  SNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             NA+ F+S G   + +K   +        FSVK+ G  I  +    +FN+F        R
Sbjct: 913  GNAVKFTSTGKVSIKVKVEHETDKDVILYFSVKDTGIGIQREKLGMIFNKFTQADESTTR 972

Query: 752  --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               G GLGL+I +    + GG + + S     +     
Sbjct: 973  EFGGTGLGLAISKQLTEMMGGRMGVESIQGEGSNFWFT 1010



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 98/309 (31%), Gaps = 29/309 (9%)

Query: 183 LKCKKLSNHISVFKVLFD-SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA-IGES 240
           L+ KKL      ++ +F+ ++   +      G I  AN +            ++  I + 
Sbjct: 11  LQRKKLQESQDRYRAMFENTMCIKMLIDPNDGAIAEANEAACTFYGYSVEQIRQMKISDI 70

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF----GEAGIAIDVS 296
             L  +E+ K + ++ + +  + E+   L  G  +  +I      F        I  D++
Sbjct: 71  NTLSPDEVAKNIQAALSGQHQYFESRHRLADGQIRDVQISSSPIPFKGQKWLYYIIHDIT 130

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPS 351
                  +L         +L ++   + I D+    ++  N    +L+      +  +  
Sbjct: 131 ARKNAEKKLHENKSFQRVLLEDINAGVVIVDKKTHTIEQINSQGAKLFGASQDEIIGHVC 190

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI--VTSNPR 409
           ++ L  + R                 I       +         +G  L ++  V S   
Sbjct: 191 HNFLCPYDRGN-------------CPITDKGMDLDRADRILLKADGTLLPILKSVKSIKL 237

Query: 410 GG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            G    +  F +++ +   E +            + +   + V    G I  +N      
Sbjct: 238 DGKEKLLETFIDISDRKSAEERLKKSETNFRSFFNSIDNFLFVLDVKGNILKANETAIRR 297

Query: 467 WKTEENRLS 475
            +  E  L+
Sbjct: 298 LEYSEEELN 306


>gi|190891008|ref|YP_001977550.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696287|gb|ACE90372.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 761

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 121/530 (22%), Positives = 215/530 (40%), Gaps = 66/530 (12%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---------LAFLATNPSNDELLE 357
                L      +  FD      F +RS  ++  +           A    +P +  L E
Sbjct: 248 RVETALSRGRCGLWDFDFENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMHPDDGGLYE 307

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
             R+  K           + IF +  +   +   W     Q   VI +++ R   I +  
Sbjct: 308 IARAIAK-----GHSGQVDQIFRMRHAGGHY--VWMRARAQ---VIRSNSGRMHLIGIAM 357

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +Y    +   + I+  SE   ++  + R+ + N  F+  +   ++ L PG
Sbjct: 358 DVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPG 417

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T    + A  +R         +    I   D    S    ++L  +  L+ +     +  
Sbjct: 418 TERSIVNAAAAR--------PVIERRIADADGSGYSRTTEVQLADERWLQINERRTRDGG 469

Query: 538 TMLTFVNVTDSVRAERALTE-----------------------------------KNEAL 562
            +    ++T   R +  L E                                   + E  
Sbjct: 470 RVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERA 529

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621
             A++ K+ F+ ++S+ELR+PL  I+GF+++L+    G L ++K  +Y   I  S   LL
Sbjct: 530 EAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSAKYDEYARDIHDSGKHLL 589

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N+++DILD++ ++AG +KL+   I L  L+ E  +  A    E NI I       L +  
Sbjct: 590 NVISDILDMSKIEAGHLKLHRERIDLVPLIEESLRFTAIPAAEKNILIDQRISSGL-TLT 648

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR+ + Q+   +LSNA+ F+  G  + ++  R +G    ++ + G  IP      +   
Sbjct: 649 ADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDGAVTVTIADTGIGIPRSALSKIGQP 708

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V + +   + G GLGL+I  S   LHGG + I S +   T I+ RIP
Sbjct: 709 FEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRIP 758



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 14/160 (8%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++  +  +     + L +     + A  ++D+N  L   N  F + + +  +
Sbjct: 353 IGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDS 412

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            L        +     +A  + E          I     S  +      L + + L +  
Sbjct: 413 VLVPGTERSIV--NAAAARPVIE--------RRIADADGSGYSRTTEVQLADERWLQINE 462

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                GG + +  ++T+    + +     +    TI  LS
Sbjct: 463 RRTRDGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 502


>gi|46581020|ref|YP_011828.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450441|gb|AAS97088.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234704|gb|ADP87558.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1000

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 119/527 (22%), Positives = 221/527 (41%), Gaps = 40/527 (7%)

Query: 289 AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            G   D++ +    +    + E     L ++  A+   D++  +   N    +L     +
Sbjct: 328 IGTHTDITAQKLSEESARASGENLAVTLSSIGDAVIATDRDGRVTLMNPVAEKLTGWTQS 387

Query: 345 FLATNPSNDELLEFLRSANK--LPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLH 401
                P    +   + +  K  LP  +      E +    ++     DT  +  +G+   
Sbjct: 388 SAIGKP-VSAVFVIISATTKQSLPSPV------EEVLRTGRTVSLSNDTTLVSRSGREFQ 440

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           +  ++ P         G + +F ++T Q   + K           +D     V +    G
Sbjct: 441 IADSAAPIHDASGEMSGVVMVFTDVTQQYRFKRKLAESEHRFRTALDEAPFPVLLHDARG 500

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--K 512
            + + N  +  L   E +++      ++++        E D    F+    S D E+  +
Sbjct: 501 DVLMLNRQWSLLTGYEPSQVPTIHRWKDLSD------PEIDPESRFSGQARSTDGEQNIR 554

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
              GTL   + S++E   +P     TML  V+VT      RAL    +A   A+  K  F
Sbjct: 555 CSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKKAAESANAAKTEF 614

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+G   LL ++    L+ +Q QYV    +SS  L  L++D+LDL+ 
Sbjct: 615 LANMSHEIRTPLNGIMGMMQLLVST---PLDDEQKQYVSNAISSSGRLSQLLSDVLDLSR 671

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
           ++AG + L    +  ++LL+ +K         + + + +     L    + D  RL QI 
Sbjct: 672 IEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGLPQHILLDGGRLRQIL 731

Query: 692 SKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
             ++ NA+ F+ KG   V L     +G      + SV++ G  IP+   + +FN F    
Sbjct: 732 FNLVGNALKFTEKGHIHVRLDELAIHGGMRQLLLISVEDTGIGIPQGAMRDIFNPFYQVD 791

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                ++ GVGLGLSIV   +   GG + I S++   T I+  +P +
Sbjct: 792 GSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLPFR 838



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 103/351 (29%), Gaps = 32/351 (9%)

Query: 115 FENWLKFHHYIKLSKATEKLRK--EG------QSFDLVAETQNDCAIKIEGRVSGSCAFL 166
           FE W    H   +  A   + +   G        + ++ +    C I   GRV    A  
Sbjct: 263 FETWRSLAHPEDIDTALATINRCLSGGTDQYEHVYRMLRKDGTACWILDRGRVVARDAEG 322

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
             +   G ++++    L  +          V   S+   V   D+ G +   N   +K T
Sbjct: 323 NPVRFIGTHTDITAQKLSEESARASGENLAVTLSSIGDAVIATDRDGRVTLMNPVAEKLT 382

Query: 227 E-TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIV 280
             T+     K +     +     K+ + S          TVS     TL   + + ++I 
Sbjct: 383 GWTQSSAIGKPVSAVFVIISATTKQSLPSPVEEVLRTGRTVSLSNDTTLVSRSGREFQIA 442

Query: 281 RVLNSF--------GEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYL 328
                         G   +  DV+++     +L          L      + + D    +
Sbjct: 443 DSAAPIHDASGEMSGVVMVFTDVTQQYRFKRKLAESEHRFRTALDEAPFPVLLHDARGDV 502

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NR +  L   + +     P+     + L      PE     + +       ++    
Sbjct: 503 LMLNRQWSLLTGYEPS---QVPTIHRWKD-LSDPEIDPESRF--SGQARSTDGEQNIRCS 556

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             T    N   + +    + R  T+    ++TVQ +         K     
Sbjct: 557 DGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKKAAESA 607



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 101/334 (30%), Gaps = 34/334 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +  GR     A+ R  +      + A   L+ +     +     L  + D  +   D   
Sbjct: 71  ESGGRPGAQTAYFRQAA---ERIQDAVRILRTRSALFSLDT--GLIQTKDDALAFVDAIN 125

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-- 271
           ++     +Y +  +       + I +    F            + +K F      L    
Sbjct: 126 EVS--TATYARIRDASTPNTMRIISQRND-FDALHVNYEKLQRSFDKAFDSRAQRLMQSG 182

Query: 272 -GNNKSYKIVRVLNSFGEAGIAID-VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
            G    + +V +   F   G+A    S    + +        L      +  ++  +   
Sbjct: 183 IGLMSLWIVVVMFLGFQLHGLAERFRSAAEQLRESEERWNFALEGAGDGVWDWNLAKGTL 242

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK------------TWKEN 377
           F +R + E+   +   L    ++ E    L      PE ++                 E+
Sbjct: 243 FLSRKWKEMLGFNDDELV---NDFETWRSLAH----PEDIDTALATINRCLSGGTDQYEH 295

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           ++ + +   T    W L  G+ +      NP    I    ++T Q   E       +   
Sbjct: 296 VYRMLRKDGTAC--WILDRGRVVARDAEGNP-VRFIGTHTDITAQKLSEESARASGENLA 352

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            T+  + + V     DGR+ L NP    L    +
Sbjct: 353 VTLSSIGDAVIATDRDGRVTLMNPVAEKLTGWTQ 386



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 20/209 (9%)

Query: 125 IKLSKATEKLRKEGQSFDL----VAETQNDCAIKIEGRVSGSCAFLRIL--SLDGIYSEL 178
             L    E++ + G++  L       +++    +I    + S A +      + G+    
Sbjct: 407 QSLPSPVEEVLRTGRTVSLSNDTTLVSRSGREFQI----ADSAAPIHDASGEMSGVVMVF 462

Query: 179 AETTLKCK---KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            + T + +   KL+     F+   D   F V   D  GD+L  N  +   T  E      
Sbjct: 463 TDVTQQYRFKRKLAESEHRFRTALDEAPFPVLLHDARGDVLMLNRQWSLLTGYE-PSQVP 521

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG----- 290
            I   + L   EI      S        E       G  +++ +  +       G     
Sbjct: 522 TIHRWKDLSDPEIDPESRFSGQARSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITM 581

Query: 291 -IAIDVSKEITVNDQLTHTYEILHNLTVA 318
             A+DV+ +      L  + +   +   A
Sbjct: 582 LAAVDVTVQSETMRALQRSKKAAESANAA 610


>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
 gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
          Length = 1325

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 161/382 (42%), Gaps = 10/382 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N  +Q   E K     ++  E +D     +     +G     N  F  L     N
Sbjct: 451 IQLTQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          ++ +  + ++           +++       G    +      +S   
Sbjct: 511 DVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRA 570

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +   +++T+    E+ L E  +A     + K  F+ ++S+E+R+P+  I+G   
Sbjct: 571 DKVNGIVGILLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L   ++   L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+
Sbjct: 631 LALNTQ---LDATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLD 687

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V   I+ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI  
Sbjct: 688 NVTAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISA 747

Query: 712 AARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
             R   +     +F+VK+ G  I ++    +FN F    +    Q  G GLGLSI +  +
Sbjct: 748 RVRQLNEQQVMLLFAVKDTGIGIAQEKLSDLFNAFSQADNSITRQYGGTGLGLSISKQLV 807

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
            L GG +S+ S +   +T    
Sbjct: 808 ELMGGQISVHSEEGKGSTFEFS 829



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 176 SELAETT-LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
           ++ AE   L  +K+     + + + D+    ++     G  L  N  + +     G+   
Sbjct: 454 TQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELM---GLYNN 510

Query: 235 KAIG-ESRKLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF-- 286
             IG   +++F   + +R   +       + +    +S ++  G  +   +     S   
Sbjct: 511 DVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRA 570

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               G  GI +D+++   +  +L    +    ++ A
Sbjct: 571 DKVNGIVGILLDMTERKEMEQELREAKDAADAMSQA 606


>gi|150392090|ref|YP_001322139.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951952|gb|ABR50480.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 790

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 98/641 (15%), Positives = 235/641 (36%), Gaps = 34/641 (5%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----K 235
           +   + K+L       +    + + +V + D  G        + K              K
Sbjct: 121 QLKKQIKQLEERQRNLEHAEATSNVIVVYTDLEGTFTKVPPGFCKIMGYTEAELLNKNYK 180

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------A 289
            I     L         +          +     + G      +   +            
Sbjct: 181 EITHGEDLQISVENTDSLIRGEKTAIKMDKRYIRKDGQIIWVDLNESVARDHYGNPCYLL 240

Query: 290 GIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
               D+++E  + + L         I  N++  I     +  +++ + S       ++  
Sbjct: 241 AYIRDITEEKRMKNALEESEMKLRRITDNISDMIVETTMDGIIRYASPSNKVSTGYEVEE 300

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIF-SVYKSSETHKDTWHLPNGQTLHVIV 404
           +      + +LE +   +    ++  +  KE++  S  +    H+   +       +V++
Sbjct: 301 MIG----ESILEKMHPDDIDKVKITMEKLKEDLTWSKVEVRCQHRQGHYAWIEIMGNVLI 356

Query: 405 TSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
             N    G I+   +++ +  +E       +      ++  + ++V+  D +  L+N A 
Sbjct: 357 GDNDGASGLIFCARDISERKKVEMDLYESEERYRSLFENSPDAISVYN-DEKFILANRAA 415

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLS 522
             L   ++ +   G  + +   + S         ++    +   +  E K +     ++ 
Sbjct: 416 AKLVGLKDPKQLIGRSVMDFIHSSSYEKKLEATEEIKIGKVEPGYFTEEKIVDIYGRVID 475

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA------LRKADEIKNSFVQHV 576
             V    +         +   +++D  RAE       +       +++ D +K  F  ++
Sbjct: 476 VEVGCSLLSYNGRMAVQVVSRDISDRKRAEILEKHMAQKQQLIHEMQECDRLKTEFFSNI 535

Query: 577 SYELRSPLTNIIGFTDLLK----TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           S+ELR+PL  I+G   L+          +  +  S++V  +  +S  LL LVN+++D+  
Sbjct: 536 SHELRTPLNVILGSLQLMNLYTNKEASMTYPNNLSKHVGIMRQNSYRLLRLVNNLIDMTK 595

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +D+G  ++      +  ++ E+  S+A  +    I +   ++ +      D  ++ +I  
Sbjct: 596 IDSGFCEMQLQNHNIVSIVEEITLSVAAFIENRQITLLFDTEVEERMIACDPDKIERIIL 655

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
            +LSN++ F++ G  + +      G+ + S+K+ G  I  +    +F RF         +
Sbjct: 656 NLLSNSVKFTNYGGQITVYIEEIEGNVVISIKDTGIGIETEKLDMIFQRFRQADDLLTRR 715

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G G+GLS+ +S I L GG +S++S     +      P +
Sbjct: 716 NEGSGIGLSLAKSLIELQGGTISVTSEYGRGSEFTVTFPIR 756


>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
 gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
          Length = 1325

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 161/382 (42%), Gaps = 10/382 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N  +Q   E K     ++  E +D     +     +G     N  F  L     N
Sbjct: 451 IQLTQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          ++ +  + ++           +++       G    +      +S   
Sbjct: 511 DVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRA 570

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +   +++T+    E+ L E  +A     + K  F+ ++S+E+R+P+  I+G   
Sbjct: 571 DKVNGIVGILLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L   ++   L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+
Sbjct: 631 LALNTQ---LDATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLD 687

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V   I+ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI  
Sbjct: 688 NVTAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISA 747

Query: 712 AARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
             R   +     +F+VK+ G  I ++    +FN F    +    Q  G GLGLSI +  +
Sbjct: 748 RVRQLNEQQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLV 807

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
            L GG +S+ S +   +T    
Sbjct: 808 ELMGGQISVHSEEGKGSTFEFS 829



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 176 SELAETT-LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
           ++ AE   L  +K+     + + + D+    ++     G  L  N  + +     G+   
Sbjct: 454 TQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELM---GLYNN 510

Query: 235 KAIG-ESRKLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF-- 286
             IG   +++F   + +R   +       + +    +S ++  G  +   +     S   
Sbjct: 511 DVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRA 570

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               G  GI +D+++   +  +L    +    ++ A
Sbjct: 571 DKVNGIVGILLDMTERKEMEQELREAKDAADAMSQA 606


>gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
 gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
          Length = 827

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 99/502 (19%), Positives = 186/502 (37%), Gaps = 56/502 (11%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            A        +  + +   E L  +   + + +++R   F NR   E   ++        
Sbjct: 372 YAEQARLSEALALERSKLTEALEQMGDGVIVLEEDR--GFANRLAREALGLERE-----V 424

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              +L ++L           +   +     V  +            G+   V+ T   R 
Sbjct: 425 GLGDLPDYL-----------YPALEGRELEVELA------------GRAFSVLGTREGRL 461

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             + + E +T +   E             +  + + + V   +GRI+    A        
Sbjct: 462 RVLVLHE-ITQRKLAEQAIRESEARNRAILQAIPDMLFVVNQEGRIQEYKSAREEPLSVP 520

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                  T    +    +    E+    L    +  F+ + ++  G L       ++   
Sbjct: 521 GQFFLGRTLSEVLPPEAANRAMEALHTALTQGSLLFFEYQIRT-DGRLRDYEGRAVQ--- 576

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +   Q +L   +VT    AER              IK+ F+  VS+ELR+PL  I+GF
Sbjct: 577 --IAPQQGLLIIRDVTPQKDAER--------------IKSEFIAAVSHELRTPLAAIMGF 620

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +LL + ++     +  +++  I  +   L N+V+++LD + ++AG  ++    + L + 
Sbjct: 621 AELLTSGEIPL--EEGQEFLRIIYDNGRRLKNMVDNLLDSSRLEAGRFEVYKRPVQLEET 678

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L  V  S       + +         L    AD  R+ Q+   +LSNA  F+ KG  V L
Sbjct: 679 LRGVADSFTGVAQLSQVEFHREIPP-LPPVEADPDRIGQVMGNLLSNAFKFTPKGGRVTL 737

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
           +A  +       V++ G  IPE     +F R+    +A      G GLGL I ++ +  H
Sbjct: 738 RAMLEGDSLKIEVEDTGPGIPESERSRLFQRYGRTQSAVSRGVSGTGLGLYISKAIVEAH 797

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + + S     TT +  +P 
Sbjct: 798 GGRIWVESEVGKGTTFSLTLPL 819


>gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 652

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 101/515 (19%), Positives = 198/515 (38%), Gaps = 43/515 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           K       + H   I     +A+  FD+   +   N+ F++L        ++        
Sbjct: 2   KTRERQKDIDHYRLIFEFSPLAMIRFDKTGTIIDCNQKFIDLMG------SSREKLIGFN 55

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGG-- 411
              R+  K+   +          +V  ++  ++D +    G     +  +     +G   
Sbjct: 56  TITRTTPKMSAAVKQ--------AVEGATSEYEDIYTSVTGNKTTYIRAVFNPIEKGKNP 107

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWK 468
              I   E+++ +  +E +            ++  + +  F  PD   K  +PA   +  
Sbjct: 108 TEVIATLEDISERKRVEEELAKTEARFKIMAENTKDLIYYFSVPDKTFKYVSPACLDVTG 167

Query: 469 TEENRLSPG-THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                         ++     + +      D+    ++   +     Q          L+
Sbjct: 168 YPPGTFYADSQFFFDMVHPEWQEFMHQQWMDMAHGKMSPLVE----YQIIDRYGKTKWLQ 223

Query: 528 YSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            S +P  + +           +VT+   A   +  +      A   K+ F+ ++S+E+R+
Sbjct: 224 QSNVPFYDEEGNPIRVEGIVRDVTELKNALERVEHEKAKAETASRTKSEFLANMSHEIRT 283

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G   L+++    +   KQ +YV     +S  L N+++DILDLA V+AG + L  
Sbjct: 284 PLNGIMGMLQLMESE---TQTPKQGEYVNAAMQASKRLNNVLSDILDLARVEAGKLNLYN 340

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
                 D L  V +        + + +K+    +L  +   D  RL QI + I+ NA+ F
Sbjct: 341 KEFNPADELKHVFELFEVTSRHSGVNLKLKLPPELPLTVTGDPARLQQILTNIVGNALKF 400

Query: 702 SSKGSTVIL-----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
           + +G  +I      ++   N   +F+V++ G  I +D    +F  F   +     Q +G 
Sbjct: 401 THEGHVLITAQLLPRSTPGNCHILFTVEDTGVGIADDKMNLLFQSFTQASEGYTRQYQGA 460

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI +    L GG +++ S+ E  TT    IP
Sbjct: 461 GLGLSICKRLTELMGGTIAVESNVEQGTTFYISIP 495


>gi|163759100|ref|ZP_02166186.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162283504|gb|EDQ33789.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 795

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 118/490 (24%), Positives = 209/490 (42%), Gaps = 42/490 (8%)

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           W   +  +      D ++ F  ++  + P+  +       + S       H       NG
Sbjct: 283 WSRSMYEILGLKPRDTVISFGEASQLVHPDDGDLYEIARKVASGDIKQVDHLFRMRHANG 342

Query: 398 QTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
             L +   +      +     I +  ++T Q  L+ +     +   + I+  SE   ++ 
Sbjct: 343 HYLWMRARAQVVDPTSAETHLIGIAMDVTEQHRLQQRTMEADQRLFDAIESTSEAFVLWD 402

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHI-------------RNIAATCSRYYNESDGWD 498
            D R+ L N  ++ +     + L+PGT               R +A  C+R   ++    
Sbjct: 403 RDERLVLWNKHYQEIHGLPADILAPGTPRPVVEKAATRPVVERRLAVPCARDSAQTFEVQ 462

Query: 499 LFAAIITSFDDERKSLQGTL--------------ELLSDS--VLEYSIIPLPNAQTMLTF 542
           L         +ERK+  G L              E L DS   L  +I  L ++Q     
Sbjct: 463 LGDGRWLQI-NERKTRDGGLVSVGTDITPLKRNQERLRDSEKRLMATIGDLTSSQA-ELK 520

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
               +          + E    A   K+ F+ ++S+ELR+PL  IIGF+++L+    G L
Sbjct: 521 RKAAELSELNMDYQVETERAEAASRAKSEFLANMSHELRTPLNAIIGFSEVLQARMFGPL 580

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + K  +Y + I  S   LL ++NDILD+A ++AG M+L    + L  LL E  + +A +
Sbjct: 581 GSDKYGEYADDIHNSGIHLLTVINDILDMAKIEAGQMQLEREDVDLAPLLKETLRLVAIQ 640

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             + +IR+      KL S  ADR+ + QI   +LSNA+ F+  G  ++++A + +     
Sbjct: 641 AEQKDIRVDQRISAKL-SLNADRRAMKQILLNLLSNAVKFTEPGGKILVRARKTSCAVTL 699

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           ++++ G  IP+ +   +   F  V N       G GLGL+I  S   LHGG + + S + 
Sbjct: 700 TIEDTGIGIPKALLNRIGQPFEQVQNQFSKSTGGSGLGLAISRSLAELHGGAMKVRSIEG 759

Query: 780 GVTTINCRIP 789
             T ++ R+P
Sbjct: 760 MGTIVSVRVP 769



 Score = 70.7 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 85/247 (34%), Gaps = 31/247 (12%)

Query: 211 QAGDILWANISY-------KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
             G + W+   Y       +    + G   Q    +   L+  EI +++ S    + +  
Sbjct: 277 ARGRLYWSRSMYEILGLKPRDTVISFGEASQLVHPDDGDLY--EIARKVASGDIKQVDHL 334

Query: 264 ETVSTLEHGNNKSYK----IVRVLNSFGE-AGIAIDVSKEITVNDQL----THTYEILHN 314
             +    +G+    +    +V   ++     GIA+DV+++  +  +        ++ + +
Sbjct: 335 FRMRH-ANGHYLWMRARAQVVDPTSAETHLIGIAMDVTEQHRLQQRTMEADQRLFDAIES 393

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
            + A  ++D++  L   N+ + E+  +    LA       +           E+   +  
Sbjct: 394 TSEAFVLWDRDERLVLWNKHYQEIHGLPADILAPGTPRPVV-----------EKAATRPV 442

Query: 375 KENIFSV-YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            E   +V             L +G+ L +       GG + +  ++T     + +     
Sbjct: 443 VERRLAVPCARDSAQTFEVQLGDGRWLQINERKTRDGGLVSVGTDITPLKRNQERLRDSE 502

Query: 434 KVQGETI 440
           K    TI
Sbjct: 503 KRLMATI 509


>gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 585

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 152/370 (41%), Gaps = 22/370 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++              I+++  G+ +    G I L N AF+ ++           HIR +
Sbjct: 232 EISKAQEMQTDRLHTLIENVGSGLILIDRRGYINLINRAFKEIF-----------HIRPV 280

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                 Y       ++   +   F  E K  +  L  +      + +   P   T     
Sbjct: 281 DYLYRPYAEAFAHKEIVQLVNEIFMKETKVRKQMLLTIGIERKHFEVYGAPIIGT----- 335

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              D  +    +      L+K ++++  FV +VS+EL++P+T+I GF + L    +    
Sbjct: 336 --NDEWKGIVLVFHDITELKKLEQMRKDFVANVSHELKTPITSIKGFAETLLDGAMKD-E 392

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                ++  I   S  L  LV D+LDL+ ++    +L+  T+ L  LL+E+      K  
Sbjct: 393 RTLEHFLSIIWKESERLQTLVQDLLDLSKIEQQEFQLHMETVDLTHLLHEIAIMFQRKAE 452

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I  ++ +  K      D  RL QIF  +++NA+ ++ KG  V + A     + +  V
Sbjct: 453 EKGIDFRMHA-AKSIYMEGDANRLKQIFINLITNALTYTPKGGQVEVIAEEQEEETLVHV 511

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I E     +F RF            G GLGL+IV+  +  H GH+++ S+    
Sbjct: 512 KDTGIGIEEAEIPRIFERFYRVDKARSRHSGGTGLGLAIVKHLVEAHHGHITVKSAVGKG 571

Query: 782 TTINCRIPSK 791
           TT     P +
Sbjct: 572 TTFTVHFPKQ 581



 Score = 44.9 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL--- 355
                Q    + ++ N+   + + D+  Y+   NR+F E++ I        P  +     
Sbjct: 235 KAQEMQTDRLHTLIENVGSGLILIDRRGYINLINRAFKEIFHIRPVDYLYRPYAEAFAHK 294

Query: 356 -LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            +  L +   + E       ++ +         H + +  P      +I T++   G + 
Sbjct: 295 EIVQLVNEIFMKETKV----RKQMLLTIGIERKHFEVYGAP------IIGTNDEWKGIVL 344

Query: 415 MFENLTVQVDLET 427
           +F ++T    LE 
Sbjct: 345 VFHDITELKKLEQ 357


>gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
 gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
          Length = 882

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 158/375 (42%), Gaps = 28/375 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +           I+     + +  PD  ++  N         +         + ++ A C
Sbjct: 371 EARASEARYRGMIEAFDGLMYICSPDRHLEFMNERLIERTGRDGTGGICHQVLHDLPAPC 430

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQT----MLTF 542
              +            + SF  E KS+Q       D    +     + NA      +   
Sbjct: 431 PWCHG-----------VESF--EGKSVQWEWNSPEDGRWYQVFNTTVENAYGTSSKLAMI 477

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT+   AE AL +  +A  +A+  K+ F+ ++S+E+R+P+  +IG T LL+   L  L
Sbjct: 478 TDVTERKEAEEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLE---LTEL 534

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N++Q +YV  + +    LL L+NDILD++ ++AG+M L      L   + +V  +     
Sbjct: 535 NAEQREYVSSLKSCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAA 594

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD-- 718
            E  +R++V     +  + + D+ R  QI   +L NA+ F+ KG  T+ +          
Sbjct: 595 REKALRLQVEVAPDVPDAVLGDQLRFKQILLNLLGNAVKFTEKGGVTITVTLLEQPVAPP 654

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
            F  +V++ G  I  +  + +F  FV       R   G GLGLSI      + GG +SI 
Sbjct: 655 LFQMAVRDTGVGIAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSISIE 714

Query: 776 SSDEGVTTINCRIPS 790
           S+    +     +P 
Sbjct: 715 STPGVGSCFTLTLPL 729


>gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 458

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 161/386 (41%), Gaps = 31/386 (8%)

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +N  G    +  ++T + +               +D +++GV     +G++ L NPA   
Sbjct: 96  NNLAGQLKTVITDITTEKN----------RARAILDSMADGVIALDREGKVLLVNPAVED 145

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           ++  E    +P   ++NI      Y  E   +          ++    +   L      V
Sbjct: 146 IFAIE----NPADQVKNILGIIRNYELEQLLFHALKR-----NEPMVKVLKILTSEEPRV 196

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
               + PL ++ T    +        +R          K ++++  FV +VS+ELR+PLT
Sbjct: 197 FRVHLTPLRSSDTKTEGIVAVLRDITDRR---------KLEQMRTEFVANVSHELRTPLT 247

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I GF + L    L        +++E++S  +  L  L+ND+L+L+ ++      N+  +
Sbjct: 248 SISGFLETLLDGALEE-PEIARRFLEHMSDETERLTRLINDLLNLSNIEDRQFVPNFQPV 306

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            + +L++ V      +  E  + + V     L   + D   L+Q+ + ++ NA+ ++   
Sbjct: 307 DMAELIHRVAPVYEPRAREKGLTLMVTLSPNLPPVIGDEDLLMQVLTNLIDNAIKYTPAK 366

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
             + +KA     +    V + G  IP +    +F RF         +  G GLGLSIV+ 
Sbjct: 367 GKIEIKARASEQEMKVIVTDTGIGIPTESLARIFERFYRVDKARSREMGGTGLGLSIVKH 426

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +  HGG + ++S+    +     +P
Sbjct: 427 IVERHGGSLEVTSTVGKGSIFAFILP 452



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 31/161 (19%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--ELLEFLRS 361
           +      IL ++   +   D+   +   N +  +++ I+      NP++    +L  +R+
Sbjct: 112 EKNRARAILDSMADGVIALDREGKVLLVNPAVEDIFAIE------NPADQVKNILGIIRN 165

Query: 362 ANKLPEQLNWKTWKEN-----IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
                EQL +   K N     +  +  S E      HL       +  +     G + + 
Sbjct: 166 YEL--EQLLFHALKRNEPMVKVLKILTSEEPRVFRVHLT-----PLRSSDTKTEGIVAVL 218

Query: 417 ENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
            ++T +  LE            +  T +      ++ L +G
Sbjct: 219 RDITDRRKLEQMRTEFVANVSHELRTPLTSISGFLETLLDG 259


>gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
 gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
          Length = 1771

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/698 (15%), Positives = 253/698 (36%), Gaps = 59/698 (8%)

Query: 127  LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
            ++     L  +G  F +   +     +  +G+            +     ++ E     +
Sbjct: 595  MTSDLMALNADGCEFPVEI-SLGLLPVDADGQ----------RQVAATVRDMTEELKIAQ 643

Query: 187  KLSNHISVFKVLFDSLDFLVWHRDQAGD--ILWANISYKKNTETEGIVFQKAIGESRKLF 244
            ++ +  + F+ L  ++   V+         + + + +    T      F +    S    
Sbjct: 644  RIKDSENRFRGLVTNIPGAVYRTRIEDTWIMEYVSDNIGDITGYPAADFIENSKRSFASL 703

Query: 245  ----KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-GIAI------ 293
                   I    I ++  E+   E    ++H +   + +     +  +  G+A+      
Sbjct: 704  IIEEDLAIASHAIETALAEQRSFEVQYRIQHRDASIHWVHEKGKAIYDENGVALWFDGSI 763

Query: 294  -DVSKEITVNDQLTHTYEILHNLTVAIA--------IFDQNRYLQFHNRSFVELWEIDLA 344
             D++      +++  + + L  +T +I           +++R   F + + +        
Sbjct: 764  NDITISKAAQEKIAQSQQQLETITESIPSTVYQLHWRSNRDRNFTFLSSACIATLGFHRD 823

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKE-NIFSVYKSSETHKDTWHLPNGQTLHVI 403
             +                  + E L+  +    N    ++      D   L  G      
Sbjct: 824  QVIEKFDLVAECIINDERTHIIEALSGVSSSGLNWTEEFRYRHPMGDIRWLQAGAH---- 879

Query: 404  VTSNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
                     IW     ++T +  ++ +            D+   G+      G I   N 
Sbjct: 880  GNQLADDSIIWNGYLMDITERKQIDKELAKREAHFRALFDNAGIGIVNVDERGLILDCNE 939

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             F    +   + L+ G+   +      +   +     L     +S   E + L  + +++
Sbjct: 940  QFSQYVQLSSDELN-GSSFFDYQHRDDQQTAKQLFSQLMGNDDSSMTAEIRLLSQSGDVM 998

Query: 522  SDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                ++ ++  L +        +L+  N+T   +    L +  ++   A + K+ F+ ++
Sbjct: 999  ---WMDLTLTGLQDKHGTLNSAVLSMANITSLKQISNELKQAKDSADAASKAKSDFLANM 1055

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+E+R+P+  IIG + L   ++   L+ KQ  YV+ I  +S  LL ++NDILD + ++AG
Sbjct: 1056 SHEIRTPMNAIIGMSQLCLQTE---LDKKQQNYVQKIDRASKSLLGIINDILDFSKIEAG 1112

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695
             + +   +  L  +L ++    + K  +  + +       +      D  RL Q+   ++
Sbjct: 1113 KLDIESVSFQLETMLEDLSDMFSVKAADKQLELLFAVAPNIPRQLEGDPLRLSQVLINLM 1172

Query: 696  SNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            +NA+ F+ +G  ++    L+   D     FSV++NG  + ED    +F  F        R
Sbjct: 1173 NNAVKFTDQGEVLLSISQLERVDDAITLRFSVRDNGIGLTEDQRNKLFKSFSQADTSTTR 1232

Query: 752  --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               G GLGL+I +  + L GG + + S     +T    
Sbjct: 1233 KYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFFT 1270



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 55/393 (13%), Positives = 131/393 (33%), Gaps = 35/393 (8%)

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF-KVLFDSL--D 203
           T+    ++      G+    R+ +  G  SEL   T +  +++  +    + L DS    
Sbjct: 339 TRPIEELESGIAAFGAGETKRLDNPKGAVSELITLTTQFNEMAQALEEREQALLDSRGNR 398

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
           F       +    + +I             +K +G S +L K + ++    ++  EKN+ 
Sbjct: 399 FAKLIDGMSDKSFYCSIEPDGQIAQVSEGVEKVLGVSAELLKRKYQRMFSDNAINEKNWH 458

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFG--------EAGIAIDVSKEITVNDQLTHTYE----- 310
                L+  N   +++  +L+S G           +  D  + ++V        E     
Sbjct: 459 YMDDALQGRNVPPHQV-EMLDSKGKLRRLDVFMQPLLSDNQELLSVEMLFNDVTEQFSAA 517

Query: 311 -----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +L +   A+ I D++  L F N     L+  D A +     +  + + +RS +  
Sbjct: 518 AWSNAVLESAPEAMLIVDESGRLVFTNSRCQLLFGYDEAQMLAMSVDQLVPDSIRSHHAS 577

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFEN 418
             +      ++    +  +S+         +G    V ++       ++ +        +
Sbjct: 578 LREKFVSEGRDRKMGLGMTSDLMALN---ADGCEFPVEISLGLLPVDADGQRQVAATVRD 634

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T ++ +  +           + ++   V     +    +    + S    +        
Sbjct: 635 MTEELKIAQRIKDSENRFRGLVTNIPGAVYRTRIEDTWIM---EYVSDNIGDITGYPAAD 691

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            I N   + +    E D      AI T+  ++R
Sbjct: 692 FIENSKRSFASLIIEEDLAIASHAIETALAEQR 724



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 90/283 (31%), Gaps = 29/283 (10%)

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           IG +         +    SF + +        S A E    E +SF++    Q+     I
Sbjct: 681 IGDITGYPAADFIENSKRSFASLIIEEDLAIASHAIETALAEQRSFEVQYRIQH-RDASI 739

Query: 156 EGRVSGSCAFLR----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV----W 207
                   A        L  DG  +++  +    +K++      + + +S+   V    W
Sbjct: 740 HWVHEKGKAIYDENGVALWFDGSINDITISKAAQEKIAQSQQQLETITESIPSTVYQLHW 799

Query: 208 HRDQAGDILWANISY--------KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE 259
             ++  +  + + +          +  E   +V +  I + R    E +     S     
Sbjct: 800 RSNRDRNFTFLSSACIATLGFHRDQVIEKFDLVAECIINDERTHIIEALSGVSSSGLNWT 859

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEA-----GIAIDVSKEITVNDQL----THTYE 310
           + F         G+ +  +     N   +      G  +D+++   ++ +L     H   
Sbjct: 860 EEFRYRHPM---GDIRWLQAGAHGNQLADDSIIWNGYLMDITERKQIDKELAKREAHFRA 916

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           +  N  + I   D+   +   N  F +  ++    L  +   D
Sbjct: 917 LFDNAGIGIVNVDERGLILDCNEQFSQYVQLSSDELNGSSFFD 959


>gi|120601684|ref|YP_966084.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561913|gb|ABM27657.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1000

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 119/527 (22%), Positives = 222/527 (42%), Gaps = 40/527 (7%)

Query: 289 AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            G   D++ +    +    + E     L ++  A+   D++  +   N    +L     +
Sbjct: 328 IGTHTDITAQKLSEESARASGENLAVTLSSIGDAVIATDRDGRVTLMNPVAEKLTGWTQS 387

Query: 345 FLATNPSNDELLEFLRSANK--LPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLH 401
                P    +   + +  K  LP  +      E +    ++     DT  +  +G+   
Sbjct: 388 SAIGKP-VSAVFVIISATTKQSLPSPV------EEVLRTGRTVSLSNDTTLVSRSGREFQ 440

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           +  ++ P         G + ++ ++T Q   + K           +D     V +    G
Sbjct: 441 IADSAAPIHDASGEMSGVVMVYTDVTQQYRFKRKLAESEHRFRTALDEAPFPVLLHDARG 500

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--K 512
            + + N  +  L   E +++      ++++A       E D    F+    S D E+  +
Sbjct: 501 DVLMLNRQWSLLTGYEPSQVPTIHRWKDLSA------PEIDPESRFSGQARSTDGEQNIR 554

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
              GTL   + S++E   +P     TML  V+VT      RAL    +A   A+  K  F
Sbjct: 555 CSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKKAAESANAAKTEF 614

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+G   LL ++    L+ +Q QYV    +SS  L  L++D+LDL+ 
Sbjct: 615 LANMSHEIRTPLNGIMGMMQLLVST---PLDDEQKQYVSNAISSSGRLSQLLSDVLDLSR 671

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
           ++AG + L    +  ++LL+ +K         + + + +     L    + D  RL QI 
Sbjct: 672 IEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGLPQHILLDGGRLRQIL 731

Query: 692 SKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
             ++ NA+ F+ KG   V L     +G      + SV++ G  IP+   + +FN F    
Sbjct: 732 FNLVGNALKFTEKGHIHVRLDELAIHGGMRQLLLISVEDTGIGIPQGAMRDIFNPFYQVD 791

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                ++ GVGLGLSIV   +   GG + I S++   T I+  +P +
Sbjct: 792 GSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLPFR 838


>gi|190891398|ref|YP_001977940.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696677|gb|ACE90762.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 527

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 196/515 (38%), Gaps = 41/515 (7%)

Query: 303 DQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             + H++E IL NL   + + D    +   N   +E+  +    L      DE       
Sbjct: 11  RMMPHSFESILENLPQGVVLLDSANMVTAFNSRALEVLGLPEGALRKGMDIDE------- 63

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
              LP   + +       S   + +     + LP+G+ + +    +  G  I  +E+++ 
Sbjct: 64  ---LPGTSDCRV---AACSRSPTGKPQASQFALPDGRMISLTCAPSREGSWILSYEDIST 117

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            + +E             + ++  G+ +F    ++ L N ++  ++   +     GT + 
Sbjct: 118 LIRVEDSLAEQHHRFDAALSNMPHGLCMFDSTRKLILCNDSYARMYNLPDRLTQAGTPLA 177

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           NI A  +   N       +  ++             + L    +++ +  P+ N   + T
Sbjct: 178 NILAYRAEQGNGPADTATYFDVVFEATALGAPASQNIALTDGRIVKITHNPMQNGGYVAT 237

Query: 542 FVNVTDSVRAERALTEKNEAL-------------------------RKADEIKNSFVQHV 576
             +VT +VR    L   ++ L                         R  +E++  FV   
Sbjct: 238 HEDVTKTVRLAEELRRHHDQLEVTVRNRTAEVERQAREVERMLTQERNINELQRQFVAMA 297

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E R+PL  I      L            S   E I AS + +++L+  IL    +D G
Sbjct: 298 SHEFRTPLAIIDAAAQRLLRKGGAVEPEFLSDKAEQIRASVSRIVDLMESILSAGRLDTG 357

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            + ++Y    L  L+    +  +T          +  DG      AD + L Q+F+ +LS
Sbjct: 358 TIDISYGACALRSLIRSCCERQSTI--SKTHSFVIDIDGLPEFIDADPRTLAQVFTNLLS 415

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA+ ++   S + + A  + G+   S+ ++G  I  +    +F R+          G G+
Sbjct: 416 NAVKYAPGTSEIRIAAWEETGNVRVSISDDGVGIDAEDVPLLFQRYFRARTSTGIAGTGI 475

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL++V+  + LH G + + S+    +T    +P K
Sbjct: 476 GLNLVKQIVELHQGSIEVQSARGCGSTFTVTLPIK 510



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 83/268 (30%), Gaps = 10/268 (3%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
            +    K+       F+ + ++L   V   D A  +   N    +         +K +  
Sbjct: 2   RSAPDLKQGRMMPHSFESILENLPQGVVLLDSANMVTAFNSRALEVLGLPEGALRKGMDI 61

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA-IDVSK- 297
                  + +    S S   K      +     + +   +    +  G   ++  D+S  
Sbjct: 62  DELPGTSDCRVAACSRSPTGKPQASQFALP---DGRMISLTCAPSREGSWILSYEDISTL 118

Query: 298 ---EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
              E ++ +Q       L N+   + +FD  R L   N S+  ++ +             
Sbjct: 119 IRVEDSLAEQHHRFDAALSNMPHGLCMFDSTRKLILCNDSYARMYNLPDRLTQAGTPLAN 178

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           +L +       P   +  T+ + +F              L +G+ + +       GG + 
Sbjct: 179 ILAYRAEQGNGP--ADTATYFDVVFEATALGAPASQNIALTDGRIVKITHNPMQNGGYVA 236

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDH 442
             E++T  V L  +          T+ +
Sbjct: 237 THEDVTKTVRLAEELRRHHDQLEVTVRN 264


>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
 gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
          Length = 1325

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 161/382 (42%), Gaps = 10/382 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N  +Q   E K     ++  E +D     +     +G     N  F  L     N
Sbjct: 451 IQLTQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          ++ +  + ++           +++       G    +      +S   
Sbjct: 511 DVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRA 570

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +   +++T+    E+ L E  +A     + K  F+ ++S+E+R+P+  I+G   
Sbjct: 571 DKVNGIVGILLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L   ++   L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+
Sbjct: 631 LALNTQ---LDATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLD 687

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V   I+ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI  
Sbjct: 688 NVTAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISA 747

Query: 712 AARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
             R   +     +F+VK+ G  I ++    +FN F    +    Q  G GLGLSI +  +
Sbjct: 748 RVRQLNEQQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLV 807

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
            L GG +S+ S +   +T    
Sbjct: 808 ELMGGQISVHSEEGKGSTFEFS 829



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 176 SELAETT-LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
           ++ AE   L  +K+     + + + D+    ++     G  L  N  + +     G+   
Sbjct: 454 TQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELM---GLYNN 510

Query: 235 KAIG-ESRKLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF-- 286
             IG   +++F   + +R   +       + +    +S ++  G  +   +     S   
Sbjct: 511 DVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRA 570

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               G  GI +D+++   +  +L    +    ++ A
Sbjct: 571 DKVNGIVGILLDMTERKEMEQELREAKDAADAMSQA 606


>gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 974

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 83/390 (21%), Positives = 162/390 (41%), Gaps = 18/390 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + +  +  ++ +     +   + ++ +  G+ V   +G+   +N   + L        + 
Sbjct: 152 QEVIERQRIQEELRASERQLAQFLEAVPVGLFVVDAEGQSYYANQRAQQLVGKGMIPGAT 211

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLP 534
              +  +        ++    +    I+ +   ER ++        + V  LE    P+ 
Sbjct: 212 VEELSQVYQIYVAGTHQLYPTE-KNPIVQALRGERVTVDNMEIHHGEQVIPLEVWATPIY 270

Query: 535 NAQT-----MLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRS 582
           N Q      +  F +++   +AE       +AL ++N AL++ D++K+ F+ + S+ELR+
Sbjct: 271 NEQGEIVYAIAAFQDISLHKQAEAERLQFTQALEQQNAALQRLDQLKDEFLANTSHELRT 330

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  IIG T+ L     GSL+  Q   +  + +S   L +L+NDILD A +    ++L+ 
Sbjct: 331 PLNGIIGITESLIDGAAGSLSPVQIANLAMVVSSGKRLNSLINDILDFAKLKNHDIELHR 390

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            ++    +   V       +   ++ +             D  RL QI   ++ NA+ F+
Sbjct: 391 KSVDFRQITEVVLTLSRPLIQGKSLELNNEIPADFPGIDGDENRLQQIMYNLVGNAIKFT 450

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             GS + + A +       +V + G  I  D  + +F  F           RG GLGLSI
Sbjct: 451 ESGS-ITVSATQQQNMAEVTVADTGIGISPDKFEDIFKSFEQLNASVSYPSRGTGLGLSI 509

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +  I LHGG + + S     +     +P 
Sbjct: 510 TKQLIELHGGRIRVESEVGQGSRFIFTLPL 539



 Score = 45.7 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 52/184 (28%), Gaps = 25/184 (13%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           L+ +  E+ E     ++L           +++   ++  D  G   +AN   ++      
Sbjct: 147 LENLRQEVIERQRIQEELRASERQLAQFLEAVPVGLFVVDAEGQSYYANQRAQQLVGKGM 206

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------------ 278
           I      G + +   +  +  +  +  L       +     G   +              
Sbjct: 207 IP-----GATVEELSQVYQIYVAGTHQLYPTEKNPIVQALRGERVTVDNMEIHHGEQVIP 261

Query: 279 ----IVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
                  + N  GE   AI    D+S       +     + L     A+   DQ +    
Sbjct: 262 LEVWATPIYNEQGEIVYAIAAFQDISLHKQAEAERLQFTQALEQQNAALQRLDQLKDEFL 321

Query: 331 HNRS 334
            N S
Sbjct: 322 ANTS 325



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 15/159 (9%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +        + L  + V + + D      + N+   +L    +   AT     ++ +
Sbjct: 161 QEELRASERQLAQFLEAVPVGLFVVDAEGQSYYANQRAQQLVGKGMIPGATVEELSQVYQ 220

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ---TLHVIVTS--NPRGGT 412
              +         + T K  I    +      D   + +G+    L V  T   N +G  
Sbjct: 221 IYVAGT----HQLYPTEKNPIVQALRGERVTVDNMEIHHGEQVIPLEVWATPIYNEQGEI 276

Query: 413 IW---MFENLTVQVDLET---KYNTLVKVQGETIDHLSE 445
           ++    F+++++    E    ++   ++ Q   +  L +
Sbjct: 277 VYAIAAFQDISLHKQAEAERLQFTQALEQQNAALQRLDQ 315


>gi|296332102|ref|ZP_06874566.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675503|ref|YP_003867175.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150873|gb|EFG91758.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413747|gb|ADM38866.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 579

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 149/371 (40%), Gaps = 27/371 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++              I+++  G+ +    G I L N ++   +    N++        
Sbjct: 223 MEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNQM-------- 274

Query: 483 IAATCSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                 R Y+++   +    ++      + ++  L      +     E   +P+      
Sbjct: 275 ----LRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI------ 324

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +   D  +    +       +K ++++  FV +VS+EL++P+T+I GFT+ L    +
Sbjct: 325 ---MGPDDEWKGIVLVFHDMTETKKLEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM 381

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                  S+++  I   S  L +LV D+LDL+ ++     L+  T     +L E++  + 
Sbjct: 382 ED-KEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLK 440

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E  I +++           D  RL Q+F  +++NA+ ++ +G +V +       D 
Sbjct: 441 HKADEKGISLQLNLPKDPLYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVTPREKDI 500

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V ++G  I ++    +F RF            G GLGL+IV+  I  H G + + S 
Sbjct: 501 QIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVKSE 560

Query: 778 DEGVTTINCRI 788
               T     +
Sbjct: 561 PGRGTVFTVTL 571



 Score = 41.5 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 15/142 (10%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A+D+ +     + Q      ++ N+   + + D   ++   NRS+ + + I+   +   
Sbjct: 218 LAVDLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNQMLRR 277

Query: 350 PSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
             +D      +  L     + E    K  +  I    +  E        P+ +       
Sbjct: 278 LYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPIMGPDDEWK----- 332

Query: 406 SNPRGGTIWMFENLTVQVDLET 427
                G + +F ++T    LE 
Sbjct: 333 -----GIVLVFHDMTETKKLEQ 349


>gi|283779193|ref|YP_003369948.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437646|gb|ADB16088.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 827

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/652 (17%), Positives = 231/652 (35%), Gaps = 58/652 (8%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF------------ 233
           + L   +S    L D+L   +   D  G +L  N +++K     GI              
Sbjct: 21  RALEASLSTVDSLLDALSMHIAVIDSQGVVLGVNQAWRKFGRENGIRATFNPVGSNYFEI 80

Query: 234 -QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL---NSFGEA 289
            Q A         +   +    + A    F            + +++       N+    
Sbjct: 81  CQCAASSGAYEAADVAAQVREVAKAHRAEFTHEYPCNSPTEQRWFRLRAAPYIWNNRRVV 140

Query: 290 GIAID-VS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            IA D ++     E+           +L +   +I   D++  +  +N +   ++     
Sbjct: 141 VIAHDNITPQKMAEMQARKNELALRAVLESAVDSIISIDEHGIITSYNPAAERMFGYGPK 200

Query: 345 FLAT--NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
            L      S     +  R    L      +     I  +       + T    +G T  +
Sbjct: 201 ELLGCNVSSLMPSPDRERHDGYL-----RRYLATGIPRII--GFGREATGQRKDGSTFPI 253

Query: 403 IVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRI 456
            ++        R     +  +++ +   E    T +K +   +   SE  +      G I
Sbjct: 254 DLSVGEVLYEGRRAFTGIVRDISERKATEHALATSLKQREALLSAASEVSIIATDMHGVI 313

Query: 457 KLSNPAFRSLWKTEENRLS-------PGTHIRNIAATCS---RYYNESDGWDLFAAIITS 506
              N     +     + +           H   +A +           +G+  F  +   
Sbjct: 314 TTFNRGAEQMLGYSADEMVGVASPAVVHLHSEVLARSRELTKELGYPVEGFRTFVELAER 373

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEA 561
              E +         S  ++   +  + +        +   V+VT+  ++ER L     A
Sbjct: 374 DGFEHREWTYIRRDGSQLLVNLVVTCVRDIDGQVIGYLGVAVDVTEWKQSERELKLAKIA 433

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K+ F+ ++S+ELR+P+T I+GF D++  +   S N +       I  +   L+
Sbjct: 434 AEAANHAKSEFLANMSHELRTPMTAILGFVDIVAENV--SSNPQLIDAAATIKRNGEHLM 491

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            L+NDILDL+ ++AG +++   +  +  L  +V Q +  +     + + +   G +  + 
Sbjct: 492 GLLNDILDLSKIEAGRLEVQKHSCNVRALTADVIQLMRVRSDAKGLELSIEFQGAIPETI 551

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-DFIFSVKNNGSSIPEDMCKSV 738
             D  RL QI   ++ NA+ F+  G   ++++  R       F +++ G  I  +    +
Sbjct: 552 ETDSTRLRQILINLIGNAIKFTENGRVQILVRLERRGTPMLEFEIRDTGIGITPEQMTKL 611

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  F         +  G GLGL+I +    + GG +++SS     ++   RI
Sbjct: 612 FRPFTQVDTSLTRKFGGTGLGLTISKRLAEILGGTITVSSKAGEGSSFLLRI 663



 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 95/297 (31%), Gaps = 37/297 (12%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TETEG 230
            ++AE   +  +L       + + +S    +   D+ G I   N + ++       E  G
Sbjct: 150 QKMAEMQARKNEL-----ALRAVLESAVDSIISIDEHGIITSYNPAAERMFGYGPKELLG 204

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF---- 286
                 +    +   +   +R +++           +T +  +  ++ I   +       
Sbjct: 205 CNVSSLMPSPDRERHDGYLRRYLATGIPRIIGFGREATGQRKDGSTFPIDLSVGEVLYEG 264

Query: 287 --GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELW 339
                GI  D+S+       L  + +    L  A     I   D +  +   NR   ++ 
Sbjct: 265 RRAFTGIVRDISERKATEHALATSLKQREALLSAASEVSIIATDMHGVITTFNRGAEQML 324

Query: 340 EIDLAFL------ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-TW 392
                 +      A    + E+L   R   K       + ++  +    +    H++ T+
Sbjct: 325 GYSADEMVGVASPAVVHLHSEVLARSRELTK-ELGYPVEGFRTFVELAERDGFEHREWTY 383

Query: 393 HLPNGQT----LHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
              +G      L V    +  G   G + +  ++T     E +   L K+  E  +H
Sbjct: 384 IRRDGSQLLVNLVVTCVRDIDGQVIGYLGVAVDVTEWKQSERELK-LAKIAAEAANH 439


>gi|298248980|ref|ZP_06972784.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546984|gb|EFH80851.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 981

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 119/756 (15%), Positives = 268/756 (35%), Gaps = 72/756 (9%)

Query: 73  HSLLTENNCLTIVWDGKDE--TPEIIGQLHQRIDIPQTDTDLLSFENW---LKFHHYIKL 127
           H+L+       +VW G+ +        +      +   +      E W   L      ++
Sbjct: 258 HALIDAIPQ--LVWTGQPDGYRDSYNQRWRDYTGLSTEEAQG---EGWVQCLHPEDRQRV 312

Query: 128 SKATEKLRKEGQSFDLVAETQNDC-------AIKIEG-RVSGSCAFLRILSLDGIYSELA 179
               ++  + G  ++     +            +    R  G           G  +++ 
Sbjct: 313 LSMWQRAVQTGGVYETELRLRQGTTGAYRWFLARAMPVRDEGGQIIKWF----GTSTDIE 368

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           +     ++L       +VL +++  LVW     G   + N  Y + T       Q     
Sbjct: 369 KQKRAEQQLKESEENLRVLAETVPQLVWTTRPDGRFDYCNQRYCEYTHAAFEHLQGYGWR 428

Query: 240 SRKLFKEEIKKRMISSSALEKNFCE----TVSTLEHGNNKSY--KIVRVLNSFGEA---- 289
                ++  +  ++    L+          +   + G  + +  + + V +  G+     
Sbjct: 429 QFMHPEDAERVVVLRQQTLQTGEPYEIEYRLRNSQTGTYRWFLARAMPVRDDTGQIIKWF 488

Query: 290 GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G   D+ ++     ++  + E    +   +   +     +   ++ N+ + +   + +  
Sbjct: 489 GTCTDIDEQKQAEQKIKESEENWRVLAETVPQLVWTTRSDGQHEYVNQRWCDYTGVTVEH 548

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKE-----NIFSVYKSSETHKDTWHLPNGQTL 400
           + ++      L F+   ++   +  W+   E           ++S+T +  W L  G  +
Sbjct: 549 MQSDRW--APLPFIHPDDREGTRTLWQHALETGAMYEHEERLRNSQTGEYRWFLTRGAPV 606

Query: 401 HVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
                 +  G  +  F    ++  Q  +E       +     ++    G+ V   D R+ 
Sbjct: 607 R-----DDTGQIVKWFGTVTDIDEQKRMEEALRQSQERASVLMNSSIIGIFV-AEDERVV 660

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            +N AF  +       L              R+    +           F   +  +   
Sbjct: 661 DANDAFLRMTGYTLEDLRER-------RMSWRHMTPPEYMARTLQAHQEFALHQSIIPYE 713

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            E +     + S +P+     +L             A    N A ++ ++ K+ F+   S
Sbjct: 714 KEYVCK---DGSRLPVLVGAVVLQHHPFQAI-----AFVLDNSARKELEQRKDDFISMAS 765

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  +   T L++       + + +  +  +  S   L  L+ ++LD++ + AG 
Sbjct: 766 HELRNPLAAVKMQTQLVQKRLERQSHHEAATALSRVEGSVKQLERLIGELLDVSKIQAGR 825

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++     + L+ LL+EV  ++      + I   V+      S V D+ RL Q+F+ ++SN
Sbjct: 826 LEYQQEMVDLDALLHEVADTMQQIHTTHTI---VVRGTAPCSLVGDKDRLGQVFTNLISN 882

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           A+ +S    TV +  +         V+++G  IP +    +F+RF       QR   G+G
Sbjct: 883 AIKYSPGAETVEMDLSTSAETVTIRVRDHGLGIPREQRDKIFDRFYRVTDPKQRAIPGLG 942

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +GL IV   +  HGG +++ S     +T    +P +
Sbjct: 943 MGLYIVAEIVKSHGGTITVESQVGTGSTFTVTLPKR 978



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 52/391 (13%), Positives = 107/391 (27%), Gaps = 63/391 (16%)

Query: 203 DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
              ++  D A  I++AN S        G   ++   +       ++    +  +  +   
Sbjct: 26  PGALFVVDDAATIVYANAS---AQSILGATREEVCAQPLWRCAPQLVSTSLYQAVQKTKR 82

Query: 263 CETVSTLE---HGNNKSYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNL 315
               S +E           +       G       +     ++ TV          L  L
Sbjct: 83  TRAPSEVEYFSPVTQTWLHVQLSSTVGGLLLQFHEMGAPAPRQETVPQSEHLYLNGLDGL 142

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW- 374
              I +      +   N       E+ LA              +R    + + L    W 
Sbjct: 143 YSGIVVLTPEGIVLGIN-------EVPLAD-----------AQIRREEVIGQPLAQTRWW 184

Query: 375 ------KENIFSVYKSSET-----HKDTWHLPNG--QTLHVIVTSNPR-----GGTIWMF 416
                 +E + +    +        +   H   G  + L V +T +          +   
Sbjct: 185 SCSPPSQEQLRAAIARASMGETVCFETVVHPREGMDRHLEVTITPHMDVEHHIEYLVLAG 244

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T +   E + + L       ID + + V    PDG     N  +R            
Sbjct: 245 IDITARKRAEAEIHAL-------IDAIPQLVWTGQPDGYRDSYNQRWRDYTGLSTEEAQG 297

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              ++ +     +       W         ++ E +  QGT    +        +P+ + 
Sbjct: 298 EGWVQCLHPEDRQRV--LSMWQRAVQTGGVYETELRLRQGT--TGAYRWFLARAMPVRDE 353

Query: 537 QTMLTFV-----NVTDSVRAERALTEKNEAL 562
              +        ++    RAE+ L E  E L
Sbjct: 354 GGQIIKWFGTSTDIEKQKRAEQQLKESEENL 384



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 86/258 (33%), Gaps = 26/258 (10%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
             A+ + D    + + N S   +       +   P        L S +    Q   KT +
Sbjct: 26  PGALFVVDDAATIVYANASAQSILGATREEVCAQP-LWRCAPQLVSTSLY--QAVQKTKR 82

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
               S  +       TW       LHV ++S   GG +  F  +      +        +
Sbjct: 83  TRAPSEVEYFSPVTQTW-------LHVQLSST-VGGLLLQFHEMGAPAPRQETVPQSEHL 134

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSN--PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
               +D L  G+ V  P+G +   N  P   +  + EE    P      +A T     + 
Sbjct: 135 YLNGLDGLYSGIVVLTPEGIVLGINEVPLADAQIRREEVIGQP------LAQTRWWSCSP 188

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTMLTF-----VNVT 546
                L AAI  +   E    +  +      D  LE +I P  + +  + +     +++T
Sbjct: 189 PSQEQLRAAIARASMGETVCFETVVHPREGMDRHLEVTITPHMDVEHHIEYLVLAGIDIT 248

Query: 547 DSVRAERALTEKNEALRK 564
              RAE  +    +A+ +
Sbjct: 249 ARKRAEAEIHALIDAIPQ 266


>gi|307822230|ref|ZP_07652462.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307736796|gb|EFO07641.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1268

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 108/687 (15%), Positives = 245/687 (35%), Gaps = 45/687 (6%)

Query: 145  AETQNDCAIKIEGRVSGSCAFLRILSLDG------IYSELAETTLKCKKLSNHISVFKVL 198
             +T     +K +G  +     +     +       +  +++E     + L    ++   +
Sbjct: 419  LQTGELRMVKADGTPAWVQLSISAAQDNDTPVIRIVMMDISERKRTEEALFKASALQNAI 478

Query: 199  FDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMI 253
            F+S +F     D  G I   N+  +        +    +    I + +++        + 
Sbjct: 479  FNSANFSSIATDAKGVIQIFNVGAEHMLGYTAADVMNKITPAEISDPQEVIARAKALSVE 538

Query: 254  SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL-------- 305
              + +E  F   V     G    Y++  +          + V+      D +        
Sbjct: 539  LGTPIEPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQDTIIGYLLIGT 598

Query: 306  -----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE--- 357
                      I ++   +    D    +Q  N     +     A +    +  E+ +   
Sbjct: 599  EIKAGALQSAIFNSANFSSIATDAKGVIQIFNVGAERMLGYTAAEVMNKITPAEISDPQE 658

Query: 358  ---FLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQTLHVIVT-------S 406
                 ++ +          ++  +F   +  E  ++ T+   +G     +V+        
Sbjct: 659  VVARAKALSVELGTPIEPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQ 718

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRS 465
            N   G + +  + + +  +E +     +     ++ +++  + +  P+GR+   N   + 
Sbjct: 719  NAIIGYLLIGTDNSARKQVEEQLRWTEESFRLMVESVTDYAIVMLDPEGRVVSWNSGAQR 778

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            +       +  G H                           F+DE   ++        +V
Sbjct: 779  IKGYSAEEIV-GQHFSRFYPLEDIERGTPQRDLDIVTARGRFEDEGWRVRKNGSTFWANV 837

Query: 526  LEYSIIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +  +I               ++T+  R ++ L        KA+  K+ F+  +S+ELR+P
Sbjct: 838  VYTAIRDQSGNLRGYAKLTRDLTERKRLDQELERAKSVAEKANLAKSDFLSSMSHELRTP 897

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I+GF  LL+       ++ Q   +  I  +   LL L+N+ILDLA +++G + L+  
Sbjct: 898  LNAILGFAQLLEAGSPPPTDA-QKIRLHQIIKAGWYLLELINEILDLALIESGKLSLSRE 956

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             + L D++ E +  I  +  + +I++  I   +     ADR R+ Q+   +LSNA+ ++ 
Sbjct: 957  PVALIDVIIECQAMIEPQAQQRDIKLTFIPFDETWFASADRTRVKQVLINLLSNAIKYNR 1016

Query: 704  KGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIV 761
            +  TV +K           SVK+ G  +  +    +F  F         + G G+GL + 
Sbjct: 1017 EHGTVEVKCIESTPERLRISVKDTGEGLAPEKLAQLFQPFNRLGQESSGKEGTGIGLVVT 1076

Query: 762  ESFINLHGGHVSISSSDEGVTTINCRI 788
            +  + L GG + + S+    +     +
Sbjct: 1077 KQLVELMGGAIGVESTVGVGSEFWIDL 1103



 Score = 45.3 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 81/245 (33%), Gaps = 36/245 (14%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFL-----A 347
           +V ++  +         IL++   +    D+N  +Q  N     +   + +  L     A
Sbjct: 23  EVRRQKALLKTGALQNAILNSANFSSIATDENGVIQIFNVGAERMLGYMSVDVLNKITPA 82

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQ----TLHV 402
                 E++    + +          ++  +F   +  E  ++ T+   +G      + V
Sbjct: 83  DISDPQEVIARAEALSVELGTPITPGFEALVFKASRGIEDIYELTYIRKDGSRFPAIVSV 142

Query: 403 IVTSNPRGGTI---WMFENLTVQVDLETKYNTLVKVQGE--------------------- 438
               + +GG I    +  + T +  +E +   L+++Q E                     
Sbjct: 143 TALRDAQGGIIGYLLIGTDNTARKLVEAERQRLLEIQEETNKQQQQQTNALQASEERLAV 202

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           T++ + + V     + RI L NP    L    +   + G  +  I    ++   +     
Sbjct: 203 TLNSIGDAVIATDAEARITLMNPLAEQLTGWTQVS-AAGRPVDEIFHIVNKATRQPAAIP 261

Query: 499 LFAAI 503
           +   +
Sbjct: 262 VMETL 266


>gi|326391194|ref|ZP_08212738.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992763|gb|EGD51211.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 568

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 170/399 (42%), Gaps = 53/399 (13%)

Query: 402 VIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPDG 454
           + + SN   G +  MF  L++++       TL  +QGE       I  +++GV      G
Sbjct: 214 IKIKSNDEIGKLGEMFNFLSLRLK-----QTLNDIQGEKNKIEAIIQFMTDGVVATDAKG 268

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            I   N A   +   +   L  G  I  I                          E++  
Sbjct: 269 NIIHYNEAAEKMLNVK---LELGMPIEGILNL-----------------------EKEDA 302

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             T+    + VL  +I PL + Q +  +V V   +  +  L          D ++  FV 
Sbjct: 303 VATMNC-GNKVLTVNIAPLKSNQQIEGYVYVLHDITEQHKL----------DAMRKEFVA 351

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+ELR+PL  I  + + L  S + +      ++++ I + +  +  LV D+L L+ +D
Sbjct: 352 NVSHELRTPLATIKSYVETLLYSDVDA--EYLKRFLKIIDSETDRMTRLVKDLLLLSKMD 409

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +    L +    LN+++ +V   ++ + H+ N ++ V           D+ ++ Q+   +
Sbjct: 410 SEEKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQEVPRHVYIDKDKMEQVIVNL 469

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           ++NA+ ++ +   + +    D     F V++NG  IP++    +F RF        R   
Sbjct: 470 VTNAIKYTPENGMIKVMTEYDENFATFIVEDNGIGIPKEDLPRIFERFYRVDKARSRELG 529

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGLSIV+  + LH G V+I S     T +  ++P +
Sbjct: 530 GTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLPYQ 568


>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
 gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
          Length = 1325

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 161/382 (42%), Gaps = 10/382 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N  +Q   E K     ++  E +D     +     +G     N  F  L     N
Sbjct: 451 IQLTQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNN 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          ++ +  + ++           +++       G    +      +S   
Sbjct: 511 DVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRA 570

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +   +++T+    E+ L E  +A     + K  F+ ++S+E+R+P+  I+G   
Sbjct: 571 DKVNGIVGILLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L   ++   L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+L+
Sbjct: 631 LALNTQ---LDATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLD 687

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V   I+ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI  
Sbjct: 688 NVTAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISA 747

Query: 712 AARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
             R   +     +F+VK+ G  I ++    +FN F    +    Q  G GLGLSI +  +
Sbjct: 748 RVRQINEQQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLV 807

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
            L GG +S+ S +   +T    
Sbjct: 808 ELMGGQISVHSEEGKGSTFEFS 829



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 176 SELAETT-LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
           ++ AE   L  +K+     + + + D+    ++     G  L  N  + +     G+   
Sbjct: 454 TQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELM---GLYNN 510

Query: 235 KAIG-ESRKLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF-- 286
             IG   +++F   + +R   +       + +    +S ++  G  +   +     S   
Sbjct: 511 DVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRA 570

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               G  GI +D+++   +  +L    +    ++ A
Sbjct: 571 DKVNGIVGILLDMTERKEMEQELREAKDAADAMSQA 606


>gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
 gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
          Length = 1352

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 98/394 (24%), Positives = 168/394 (42%), Gaps = 30/394 (7%)

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               E +     +     +  L + V     +GRI        +   T      P   +  
Sbjct: 690  RRQEAQLRASEQRNHLIVSTLPDIVFRLNREGRIIDV-----ADGNTNSLLKPPAEILNQ 744

Query: 483  IAATCSRYYNESDGWDLFAAIITSF-DDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTML 540
                 S   +     +L  A+ T+F   E +++   L     +   E  I  +P     +
Sbjct: 745  TLEDLSDVLSSEMISELRLALTTAFATGELQTVAYKLLFSGQERFFEARIKAIPTGDEAI 804

Query: 541  TFVNVTDSVR-----------------AER--ALTEKNEALRKADEIKNSFVQHVSYELR 581
              V    + R                 AER   L+  N  L ++  +K+ F+ ++S+ELR
Sbjct: 805  VLVRDITAWRVAELQLQAERDLLAQRVAERTAELSRANAELARSVRVKDEFLANMSHELR 864

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +PL  I+  ++ L     G LN +Q   ++ I  S   LL L+ND+LD+A ++AG M+L 
Sbjct: 865  TPLNTILTLSESLLEELRGPLNERQRASIQLIETSGRHLLTLINDVLDVAKIEAGRMELV 924

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
               + ++D+       I  +  +  IR+  + D     F+AD +RL QI   +LSNA+ F
Sbjct: 925  KEVVAVSDVCESSLVLIKEQAAKKQIRLHCVIDAPHTRFLADPRRLKQILVNLLSNAVKF 984

Query: 702  SSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
            + +G +V L+   D   G   F+V + G  I  D    +F  FV        +  G GLG
Sbjct: 985  TPEGGSVELRVTTDTAQGTIAFAVSDTGIGIAPDQLPRLFQPFVQLDSSLTREHEGSGLG 1044

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            L++V   ++LHGG VS++S+    +     +P +
Sbjct: 1045 LALVRRLVDLHGGSVSVTSTPGSGSVFTVTLPYQ 1078


>gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
 gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
          Length = 1057

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 123/667 (18%), Positives = 259/667 (38%), Gaps = 75/667 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF--------------LVWHRDQA 212
              SL  I +   E     ++        + L+  +                 V      
Sbjct: 279 WFASLVNIINICIELQRSKREAQIERDYLQNLYRYMPLGYVRFRMIYDKTGTPV-----D 333

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
             +L +N + +K        +   +    ++       ++ +     +   E    L   
Sbjct: 334 YKVLDSNYAAEKIIGKSQADYVGRLASELEIEDMPEYLKVFAKVLQVEQHVEKEVRLLAS 393

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYL 328
               + ++          +  D+++    ++ L  + ++L     N+ V I ++D+N  L
Sbjct: 394 GRYVHVVMYSTTPEEVICLLSDMTEMYETHEALDRSEKLLRNIYDNIPVGIELYDRNGLL 453

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
                   +L   DL         D L         L E++ W+  +      +K+    
Sbjct: 454 V-------DLNNKDLEIFGIRDKEDVLGVDFFKNPILDEEV-WRRVRNREEFSFKAYYP- 504

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY---------NTLVKVQGET 439
              +   NG   +V        G + ++ ++ +  D + +          NT +      
Sbjct: 505 ---FDRLNG--YYVTSKQ----GRLEIYSSVCMLYDAQGRLSNFFLINIDNTEINRAHSR 555

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-------CSRYYN 492
           I       ++    G++      F  + K          ++     T         ++ N
Sbjct: 556 IAEFESSFSLVSRFGKVGYC--RFDLVSKEGYGVPQWYYNLGEKEDTPLDQILGVYKHVN 613

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-----PLPNA----QTMLTFV 543
            SD  ++  +I      E  S    L + +D   +++ I     PL N     + +    
Sbjct: 614 SSDRAEVLESIRQVKAGEIDSFSHDLRIDADGRQKWTRINVMRNPLNNDPSKIEMVCVNY 673

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E+ L E       +D +K++F+ ++S+E+R+PL  I+GF++L+  ++     
Sbjct: 674 DITELKETEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAIVGFSNLIAETED---P 730

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +YV  +  ++ +LL L++DILDL+ ++AG ++ N     +N +  E+ +S++ K+ 
Sbjct: 731 DERREYVAIVQENNELLLKLISDILDLSKIEAGTLEFNDVEFDVNQMCQEIVRSLSLKVL 790

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFS 722
           +  + ++          V D+ R+ Q+    ++NA+ F+ +GS V L    D+G    F 
Sbjct: 791 DKPVELRFGDHLPECRLVGDKTRITQVLINFINNALKFTREGS-VTLGYRCDDGMMLTFY 849

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G+ IPE   +SVF RFV      Q  G GLGL+I +S +   GG + ++S     +
Sbjct: 850 VEDTGTGIPEQEQESVFERFVKLNSFVQ--GTGLGLAISKSIVEQMGGRIGLNSEPGKGS 907

Query: 783 TINCRIP 789
                 P
Sbjct: 908 CFWFTHP 914


>gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 1239

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 121/647 (18%), Positives = 252/647 (38%), Gaps = 53/647 (8%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE---TEGIVFQ 234
           L       + L N+ S    + D+    +   D  G IL  N + ++       E +   
Sbjct: 255 LIRYRQMLRSLQNNQSRLSTILDTAVDGIITIDMNGRILSFNHAAEQLFGWQSAEIVGQD 314

Query: 235 KAI----------GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
            AI              K F E  + +++          +  ST+      +    ++  
Sbjct: 315 TAILMPKAYHVRHNHFLKHFGEAGQAKILGVGREVTGVRKNGSTVPI--RLAIGKAKISG 372

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI------AIFDQNRYLQFHNRSFVEL 338
                G   D+++   +   +    E L +L   I        ++Q+  +   + S  +L
Sbjct: 373 ETLIFGFITDLTQRNAMKKTMRERDEQLRSLMSNIPGVTFRCQYNQDWRMLVISDSVKDL 432

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPN 396
                     N  +  L      A ++  ++         +++          + W    
Sbjct: 433 TGYAAEEFLKNGLSCTLFTHTEDAARVIAEIQTALANGEHYAIEYRIKHRDGSEKWVSEM 492

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G  +        + G + M + + + V      +   +     I+  S  VA F  +G I
Sbjct: 493 GCAIR------DKSGAVQMLDGVILDVTESKLRHAEYESIARAINQ-STSVAEFSMNGTI 545

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
             +N  F +L   E+N +    H    +A  +   +  + W+          +  + +QG
Sbjct: 546 LDANATFLTLLGYEKNEVIGKHHSIFCSAQDAASASYRNKWEAL--------NRGEFVQG 597

Query: 517 TLELL----SDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADE 567
             + L    S+  +  S  PL NA       ++  +++T+  R E  L    +   +A  
Sbjct: 598 EFKRLGKNGSEVWIHASYSPLLNADGKPSKVLMFMIDITERTRMENDLKLAKDKAEQAAS 657

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K +F+ ++S+E+R+P+  IIGF++++  +++     +Q +Y+  I+ S+  LL+L+NDI
Sbjct: 658 AKATFLANMSHEIRTPMNAIIGFSEIMMDTEMQD---EQRRYMNTINNSAKSLLHLLNDI 714

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           LD A ++ G ++L      L +L++ +  ++  +    N+ +++  D    S+      R
Sbjct: 715 LDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQAKRKNLDLQLELDPNTASYYLGAPDR 774

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + QI   +L N++ F+  G   ++    DN +  FS+ + G  IP+D    +F  F    
Sbjct: 775 IRQILMNLLGNSIKFTEHGYVKLVVKQLDNHELSFSIIDTGIGIPQDRLDVIFEPFTQAD 834

Query: 747 H--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                +  G GLG +I +  + L GG ++  S     +     +P +
Sbjct: 835 SSMSRKFGGTGLGTTISKQLVELMGGRLTAKSEIGSGSCFTMILPLQ 881



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           +   +       +L   Q      +D   +G+     +GRI   N A   L+  +
Sbjct: 252 INALIRYRQMLRSLQNNQSRLSTILDTAVDGIITIDMNGRILSFNHAAEQLFGWQ 306


>gi|255008850|ref|ZP_05280976.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313146595|ref|ZP_07808788.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
 gi|313135362|gb|EFR52722.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
          Length = 895

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 115/509 (22%), Positives = 221/509 (43%), Gaps = 22/509 (4%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLAT 348
           G   +++      + +      ++N   +I    ++  L F NR F     I + A L+ 
Sbjct: 234 GYIQNITDIQRKRNDINTLTHAINNAKESIYAARKDGTLIFANRQFRLNHRIAEQADLSQ 293

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSN 407
               D + +      K  E+      +   F+         D   L   G    V  T++
Sbjct: 294 IRIFDIVGDM--DGPKDWEERYHSIREGQNFNFLAYHPLKHDKSTLAFEGTMYSV--TTD 349

Query: 408 PRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--PDGRIKLSNPAFR 464
               T W F  +++ ++  E++   L ++   T+++L  G+ V     D R    N    
Sbjct: 350 DGEETFWSFTHDISERIRYESQIKRLNRIMDTTMENLPAGIVVKDIENDFRYIYRNRESY 409

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           +   + EN +             ++   + D           +  E K   G L +L   
Sbjct: 410 NRDISAENAIGM-NDFDYYPLEMAQQKRKEDMEIANTGKGMHWIMEGKDKNGNLLILDKQ 468

Query: 525 VLEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +   I+   +     +    ++T      R L E  E    +D++K++F+ ++S+E+R+
Sbjct: 469 KI---IVESEDFSPIIVSIEWDITQLELMRRELMESKEKAETSDKLKSAFLANMSHEIRT 525

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ ++  S+      ++ +Y E + A++  LL L+N+ILDL+ +++GI++  Y
Sbjct: 526 PLNAIVGFSRIISESEN---PEERKEYYEIVDANNERLLQLINEILDLSKIESGIVEFTY 582

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + L+ L  E+  +   +  +  + +K  S  +  S  +D+ R+ Q+FS ++ NA  F+
Sbjct: 583 GPVKLHTLCKEIHDAHVFRCPQ-GVELKFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFT 641

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           ++GS V     ++    +F VK+ G  I  +    VF RF    +  Q  G GLGLSI +
Sbjct: 642 TQGS-VSYGYRQEAEKVVFYVKDTGLGIEPEKLGRVFQRFAKLNNFAQ--GTGLGLSICK 698

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + I   GG +S+SS     TT    +P +
Sbjct: 699 TIIERLGGEISVSSEVGTGTTFTFWLPLE 727



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 87/282 (30%), Gaps = 21/282 (7%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK---KNTETEGIVFQKAIGES 240
             ++  N I+      ++    ++   + G +++AN  ++   +  E   +   +     
Sbjct: 241 DIQRKRNDINTLTHAINNAKESIYAARKDGTLIFANRQFRLNHRIAEQADLSQIRIFDIV 300

Query: 241 RKLFKEEIKKRMISSSALEKNFCE-------TVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
             +   +  +    S    +NF            +        Y +              
Sbjct: 301 GDMDGPKDWEERYHSIREGQNFNFLAYHPLKHDKSTLAFEGTMYSVTTDDGEETFWSFTH 360

Query: 294 DVSKEITVNDQLTHTYEILH----NLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLA 347
           D+S+ I    Q+     I+     NL   I + D   +    + NR            + 
Sbjct: 361 DISERIRYESQIKRLNRIMDTTMENLPAGIVVKDIENDFRYIYRNRESYNRDISAENAIG 420

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
            N  +   LE  +   K  E +      + +  + +  + + +   L   + +      +
Sbjct: 421 MNDFDYYPLEMAQQKRK--EDMEIANTGKGMHWIMEGKDKNGNLLILDKQKIIVESEDFS 478

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           P    + +  ++T Q++L  +     K + ET D L      
Sbjct: 479 PI--IVSIEWDIT-QLELMRRELMESKEKAETSDKLKSAFLA 517


>gi|260173495|ref|ZP_05759907.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|293372779|ref|ZP_06619160.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632288|gb|EFF50885.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 606

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 118/541 (21%), Positives = 218/541 (40%), Gaps = 44/541 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+GN K Y I         A      S    + +     + I  NL V I ++D++  
Sbjct: 89  TDENGNTKVYGIAETQEGIHIA------SAHQALQNSERILHNIYKNLPVGIELYDKDGQ 142

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSSE 386
           +        +L + D+     +   D L   +     LPE++  K    EN    ++   
Sbjct: 143 MV-------DLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYDF 195

Query: 387 THKDTWHLPNGQTLHVIVT---------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +  + ++ PN  T  + +T         ++     + +  + T       K         
Sbjct: 196 SKINKYYQPNSTTGFIDLTTKVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFESFFD 255

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD-- 495
              D+   G A F       LS   +             GT +  I    S ++ E    
Sbjct: 256 LVGDYAKVGYAHFDA-----LSRDGYALRSWYRNVGEEEGTPLPEIIGIHSHFHPEDRAV 310

Query: 496 GWDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDS 548
             D    +I       S D   +   G       +VL  +  P  N  + +    ++T+ 
Sbjct: 311 MIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQPQDNIIEMLCINFDITEL 370

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+      +      ++  
Sbjct: 371 KETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSS---LLEEAEDAEEKHL 427

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ QS+  +  E  + 
Sbjct: 428 YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRATE-QVE 486

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I +  +    +F +D+ RL Q+    ++NA+ F+S+GS +++    +  +  FSV++ G 
Sbjct: 487 ILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGS-IVIDYRINGNEVRFSVQDTGM 545

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  +  +++F RFV   +     G GLGL I +S +   GG + + S     +      
Sbjct: 546 GIEPEKQEAIFTRFVKLNNFIA--GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTH 603

Query: 789 P 789
           P
Sbjct: 604 P 604


>gi|254415523|ref|ZP_05029283.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177704|gb|EDX72708.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1568

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 137/735 (18%), Positives = 254/735 (34%), Gaps = 133/735 (18%)

Query: 172  DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT----- 226
             G   ++ +     ++L      ++ + +S+  +++  D  G   + N ++ + T     
Sbjct: 436  TGSCIDITDRKQVEERLRESEENYRSVIESVKEVIFQTDATGVWTFLNPAWTEITGFTLG 495

Query: 227  ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
            E+ G  F + I    +    E+ + ++     +    E     + G  +  ++   L   
Sbjct: 496  ESIGTNFLEYIHPDDRQRNVELFQPLLER-KKDYCQHEVRYLTKDGGYRWIEVHAQLTFA 554

Query: 287  ------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFV 336
                  G +G   D++     + QL  + + L  +   +  F    ++       N++  
Sbjct: 555  PDNTITGTSGTLRDITHYKWADAQLKASEQKLRQVIDLVPHFIFAKNKEGQFILVNQAVA 614

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET---HKDTWH 393
            + +   +  L   P               P   +   ++E    V  S ET    ++T  
Sbjct: 615  DTYGTTVEALLDQP----------ETEVAPSVDDAHQYREADLHVITSGETLYIPEETIT 664

Query: 394  LPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVD----LETKYNTLVKVQGETID- 441
               G+T  +  T  P           + +  +++ +      L+ +    V ++  T + 
Sbjct: 665  NAQGETRILQTTKIPFFVADSDVPAVLGVSIDISDRKQAEIALQQQLMRTVLLKQITQEI 724

Query: 442  ----HLSEGVAVFGPD-GRIKLSNPA----------------FRSLWKTEENRLSPGTHI 480
                +  E         GR    N                     L    E+ L     I
Sbjct: 725  RRSLNTKEIFQTTATQIGRAFGVNRCVIHTYLTEPTPAIPFVAEYLETGYESILQLEVPI 784

Query: 481  R----------------------NIAATCSRYYNESDGWDLFAAIITSFDDE-------- 510
            R                      +    C        G     AI TS+  E        
Sbjct: 785  RGNSHVQQLLKQDKAISSPDVYADPLLLCCTQMCCQIGLKSMLAIRTSYQGEPNGIIGLH 844

Query: 511  -----RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS-VRAERALTEKNEALRK 564
                 R      +ELL ++V +   I +  A                  AL +  +    
Sbjct: 845  QCDSYRHWSSHEIELL-EAVADQVGIAIAQAHLWEQETRQRQQLTEQNVALEKARQTAEA 903

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+  +S+E+R+P+  +IG T LL  ++   L S Q  + E I  S   LL ++
Sbjct: 904  ATQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTE---LTSDQRYFAETIRNSGDALLTII 960

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
            NDILD + +++G M+L      L   + E    + TK  E N+ +  + D +  +++  D
Sbjct: 961  NDILDFSKIESGKMELEEQPFELRTCIEEALDLLTTKAAEKNLELAYLIDSQTPNWIAGD 1020

Query: 684  RQRLLQIFSKILSNAMDFSSKGST-VILKA-----ARDNGD---FIFSVKNNGSSIPEDM 734
              RL QI   ++SNA+ F+  G   V + A       D GD     F+VK+ G  IP D 
Sbjct: 1021 VTRLRQILVNLISNAVKFTPTGEVLVSVTAQILADEEDRGDRYQLQFAVKDTGIGIPVDR 1080

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS---------------- 776
               +F  F  V ++   Q  G GLGL+I +    + GG + + S                
Sbjct: 1081 IHRLFKSFSQVDSSTSRQYGGTGLGLAICKRLCEMMGGQMWVESGGSVAGNPPAGWIATD 1140

Query: 777  ---SDEGVTTINCRI 788
                  G +T    I
Sbjct: 1141 SGEESSGGSTFYFTI 1155



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 85/596 (14%), Positives = 203/596 (34%), Gaps = 74/596 (12%)

Query: 41  IILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDG-----KDETPEI 95
            I  I++R    +++ +  + L E+ ++  +  +L T N  L++         ++    I
Sbjct: 159 AIAEIKERQRTEEELADYRNHLEELVEE--RTAALQTANEQLSLSQANYRSIFENAVEGI 216

Query: 96  IGQLHQRIDIPQTDT--DLLSFEN---------------WLKFHHYIKLSKATEKLRKEG 138
             +    I I        +L + +               ++    + +L+K  ++ +K  
Sbjct: 217 FQRTPDGIYISVNPAFAQILGYASPSHFLNSIKNIEQQLYVNPDDHRRLTKLIQQ-KKAV 275

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSL----DGIYSELAETTLKCKKLSNHISV 194
             F++    Q+   I I      + A + +       +G   ++ E+ L  ++L      
Sbjct: 276 SKFEIQVYRQDGQKIWIR---KNTRAVIDLSENILYYEGSIEDITESKLAEERLRESEER 332

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQKAIGESRKLFKEEIK 249
           F++L D+   L+W         + N ++ + T        G  +   +      +  E  
Sbjct: 333 FRLLADTAPVLIWLAGTDSRCYFFNKTWLEFTGRTLDKEIGDGWTDGVHPDDYHYCIETY 392

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSY------KIVRVLNSFGEAGIAIDVSKEITVND 303
                  A ++   E       GN +        +     +  G  G  ID++    V +
Sbjct: 393 SNAFK--AQKRFRMEYRLRRHDGNYRWILDTGVPRFTSTGHFAGYTGSCIDITDRKQVEE 450

Query: 304 QLTHTYEILHNLTVAI--AIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           +L  + E   ++  ++   IF  D      F N ++ E+      F          LE++
Sbjct: 451 RLRESEENYRSVIESVKEVIFQTDATGVWTFLNPAWTEITG----FTLGESIGTNFLEYI 506

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRG---GT 412
              ++   Q N + + + +    K    H+  +   +G    + V +     P     GT
Sbjct: 507 HPDDR---QRNVELF-QPLLERKKDYCQHEVRYLTKDGGYRWIEVHAQLTFAPDNTITGT 562

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
                ++T     + +     +   + ID +   +     +G+  L N A    + T   
Sbjct: 563 SGTLRDITHYKWADAQLKASEQKLRQVIDLVPHFIFAKNKEGQFILVNQAVADTYGTTVE 622

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSI 530
            L          +    +        +  +  T +  E    + QG   +L  + + + +
Sbjct: 623 ALLDQPETEVAPSVDDAHQYREADLHVITSGETLYIPEETITNAQGETRILQTTKIPFFV 682

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                   +   ++++D  +AE AL ++         ++   ++ ++ E+R  L  
Sbjct: 683 ADSDVPAVLGVSIDISDRKQAEIALQQQL--------MRTVLLKQITQEIRRSLNT 730



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/397 (12%), Positives = 117/397 (29%), Gaps = 53/397 (13%)

Query: 158 RVSGSCAFLRILSLDGIYSELAE---------------TTLKCKKLSNHISVFKVLFDSL 202
           R     A   I        ELA+                    ++LS   + ++ +F++ 
Sbjct: 153 RTMRDRAIAEIKERQRTEEELADYRNHLEELVEERTAALQTANEQLSLSQANYRSIFENA 212

Query: 203 DFLVWHRDQAGDILWANISYKKNTETEGIVF--QKAIGESRKLFKEEIKKRMISSSALEK 260
              ++ R   G  +  N ++ +                  ++L+      R ++    +K
Sbjct: 213 VEGIFQRTPDGIYISVNPAFAQILGYASPSHFLNSIKNIEQQLYVNPDDHRRLTKLIQQK 272

Query: 261 NFCETVST---LEHGNNKSYK-----IVRVLNSF-GEAGIAIDVSKEITVNDQLTHTYEI 311
                       + G     +     ++ +  +     G   D+++     ++L  + E 
Sbjct: 273 KAVSKFEIQVYRQDGQKIWIRKNTRAVIDLSENILYYEGSIEDITESKLAEERLRESEER 332

Query: 312 LHNLTV--AIAIF--DQNRYLQFHNRSFVELWEIDLA-FLATNPSNDELLEFLRSANKLP 366
              L     + I+    +    F N++++E     L   +    ++              
Sbjct: 333 FRLLADTAPVLIWLAGTDSRCYFFNKTWLEFTGRTLDKEIGDGWTDGV------------ 380

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPR-------GGTIWMFE 417
              ++    E   + +K+ +  +  + L   +G    ++ T  PR        G      
Sbjct: 381 HPDDYHYCIETYSNAFKAQKRFRMEYRLRRHDGNYRWILDTGVPRFTSTGHFAGYTGSCI 440

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +  +E +     +     I+ + E +      G     NPA+  +        S G
Sbjct: 441 DITDRKQVEERLRESEENYRSVIESVKEVIFQTDATGVWTFLNPAWTEITGFTLGE-SIG 499

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           T+         R  N      L          E + L
Sbjct: 500 TNFLEYIHPDDRQRNVELFQPLLERKKDYCQHEVRYL 536



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 101/369 (27%), Gaps = 19/369 (5%)

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
              +   +      G +       +    T   V  +  GE   L   +    +      
Sbjct: 103 VHLIPAPL----ADGSL-------RIQHTTVTAVPSEKDGEYYALLSIQDVTELTQQVHN 151

Query: 259 EKNFCET-VSTLEHGNNKSYKIVRV---LNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            +   +  ++ ++       ++      L    E   A   +    ++    +   I  N
Sbjct: 152 YRTMRDRAIAEIKERQRTEEELADYRNHLEELVEERTAALQTANEQLSLSQANYRSIFEN 211

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
               I     +      N +F ++        FL +  + ++ L      ++   +L  +
Sbjct: 212 AVEGIFQRTPDGIYISVNPAFAQILGYASPSHFLNSIKNIEQQLYVNPDDHRRLTKLIQQ 271

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
               + F +    +  +  W   N  T  VI  S          E++T     E +    
Sbjct: 272 KKAVSKFEIQVYRQDGQKIWIRKN--TRAVIDLSENILYYEGSIEDITESKLAEERLRES 329

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +      D     + + G D R    N  +        ++         +      Y  
Sbjct: 330 EERFRLLADTAPVLIWLAGTDSRCYFFNKTWLEFTGRTLDKEIGDGWTDGVHPDDYHYCI 389

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           E+      A      +   +   G    + D+ +         A    + +++TD  + E
Sbjct: 390 ETYSNAFKAQKRFRMEYRLRRHDGNYRWILDTGVPRFTSTGHFAGYTGSCIDITDRKQVE 449

Query: 553 RALTEKNEA 561
             L E  E 
Sbjct: 450 ERLRESEEN 458


>gi|120553191|ref|YP_957542.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120323040|gb|ABM17355.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 484

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 105/483 (21%), Positives = 197/483 (40%), Gaps = 27/483 (5%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--ELLEFLRSANKLPEQLNWKT 373
             A+ +   +  ++  N +   L           P  D  EL +    A  L      ++
Sbjct: 18  ADAVVLLRPDGVVEDWNSAAEILLGFTREEAVQQPLADLIELTDSEHRALTLDFGDCGRS 77

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG---TIWMFENLTVQVDLETKYN 430
                    K  ++            + V+ +     G    + +  +++     E K+ 
Sbjct: 78  LSTQGLCRSKKGQSFP----------VEVVCSPVDVQGDSLVVTLIRDVSELKRAEQKFR 127

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            L       ++   + + +    GRI L N    SL+    + +  G ++  +     R 
Sbjct: 128 GL-------LESAPDAIVIVKQGGRIVLVNSQAESLFGYHRDEM-IGQNVEILMPERYRG 179

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT---FVNVTD 547
            +       F             L G  +   +  +E S+ PL   + +L      ++T+
Sbjct: 180 QHIGHRDGFFKDPRVRPMGMGLELFGLRKGGIEFPIEISLSPLETEEGILVSSAIRDITE 239

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R ERAL +KN+ L  A++ K+ F+  +S+ELR+PL  IIGFT  L     G LN  Q 
Sbjct: 240 RKRFERALQDKNQELATANKAKDQFLASMSHELRTPLNAIIGFTGTLLMGLPGPLNDDQK 299

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  + +S+  LL+L+ND+LD+A +DAG ++L    I LN LL E+  + + +  E  +
Sbjct: 300 KQLGTVRSSAQHLLSLINDLLDVAKIDAGKLELKPENINLNQLLEEIHGTFSLQAREKAL 359

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + +    +  +   DR+ L QI   ++SN + F+ +G   +     +       V++ G
Sbjct: 360 ELGLQLPDQPVNLETDRRALSQIVMNLISNGLKFTHEGGVYVTLVRPNPQSVHVCVRDTG 419

Query: 728 SSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I     +++F  F        +  G GLGL + +   N  GG++ +  SD   +    
Sbjct: 420 PGIDTSAQENLFQPFSRGVLSSRRTEGTGLGLYLSQKLANQLGGNIQLQRSDASGSEFLL 479

Query: 787 RIP 789
            +P
Sbjct: 480 SLP 482



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 75/268 (27%), Gaps = 22/268 (8%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL-WANISYKKNTETEGIVFQKAIGESR 241
           ++ + +    +  +        L+      G +  W + +      T     Q+ + +  
Sbjct: 1   MEHQTVEMETATMRPSPADAVVLL---RPDGVVEDWNSAAEILLGFTREEAVQQPLADLI 57

Query: 242 KLFKEEIKKRMISSSALEKNF-CETVSTLEHGNNKSYKIV----RVLNSFGEAGIAIDVS 296
           +L   E +   +      ++   + +   + G +   ++V     V        +  DVS
Sbjct: 58  ELTDSEHRALTLDFGDCGRSLSTQGLCRSKKGQSFPVEVVCSPVDVQGDSLVVTLIRDVS 117

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +   +         +L +   AI I  Q   +   N     L+      +        + 
Sbjct: 118 E---LKRAEQKFRGLLESAPDAIVIVKQGGRIVLVNSQAESLFGYHRDEMIGQNVEILMP 174

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTI 413
           E  R  +       +K  +     +       +       G    + ++ +P     G +
Sbjct: 175 ERYRGQHIGHRDGFFKDPRVRPMGMGLELFGLRKG-----GIEFPIEISLSPLETEEGIL 229

Query: 414 WM--FENLTVQVDLETKYNTLVKVQGET 439
                 ++T +   E       +     
Sbjct: 230 VSSAIRDITERKRFERALQDKNQELATA 257


>gi|192360517|ref|YP_001982372.1| putative sensory box histidine kinase/response regulator
           [Cellvibrio japonicus Ueda107]
 gi|190686682|gb|ACE84360.1| putative sensory box histidine kinase/response regulator
           [Cellvibrio japonicus Ueda107]
          Length = 1232

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 226/641 (35%), Gaps = 46/641 (7%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK---- 235
                  +L N  S  + + D+    +   D  G IL  N + ++         ++    
Sbjct: 276 RYRQLYNQLLNSESRLRAIVDTAVDGIITIDSQGKILAMNNAAEQLFGWTPAEIEQRNIK 335

Query: 236 -AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI------VRVLNSFGE 288
             + E      +        +               H + +   +        +      
Sbjct: 336 MLMPEPYHSEHDSYLHNYAKTGNARIIGTGREVVALHKDGRQIPVRLAVGKAELPGQTLF 395

Query: 289 AGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNR----YLQFHNRSFVELWE 340
            G   D+S   ++  +L         ++ N+   IA F  +      + F + +   +  
Sbjct: 396 VGFVSDISVRKSMERELRTREQQYRTLISNIP-GIA-FRSHLVAPWNMIFISDAVQRVTG 453

Query: 341 IDL-AFLATNPSNDELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
                F++ + +  +LL   +  R   ++ + L+ K      + V     +        +
Sbjct: 454 WPASDFMSGHVTMGDLLHPDDVARINAQVTDALSRKRSYTCEYRVIHRDGSEHWVSETAS 513

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G       T     G I    ++T       ++  +V+  G         VA F  DG I
Sbjct: 514 G-VYDETGTPIWIDGVIM---DITESKRRAHEFEGVVEAIGRA-----SAVAEFDMDGTI 564

Query: 457 KLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
              N  F  L    +N L    H I  +    +    +    DL   I  S   E   + 
Sbjct: 565 IGVNENFLKLTGYHKNELLGRHHRILCMPEEAASEDYQQFWQDLNRGIFRS--GEFCYID 622

Query: 516 GTLELLSDSVLEYSIIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                +    +   I  +     +      ++++    E+ L    E   +A   K  F+
Sbjct: 623 CNENPIWVQAIYTPIFDVDGKPWKIFTIASDLSERKAMEQDLVAAKERAEQASIAKGMFL 682

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  IIGFT+LL  S   +L+  Q ++++ +  S+  LL L+NDILD A +
Sbjct: 683 ANMSHEIRTPMNAIIGFTELLLDS---ALDPVQLKHMQTVRQSARSLLGLLNDILDTAKL 739

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           + G ++L+     L  L  ++   +  +  +  + + +          + D  R+ Q+  
Sbjct: 740 ERGALELDMHVFSLKQLCQQIMAELQIQADKKGLGLHLDYVHTTPDQVLGDELRIRQVLV 799

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
            +L NA+ F+  G  V L            V++ G  I  +  + +F  F         +
Sbjct: 800 NLLGNAIKFTLTGE-VRLSVDVLGEGVRMQVQDTGIGIAVERIEHIFTPFTQADASMARR 858

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLG +I      L GG +S++S +   +     +P +
Sbjct: 859 FGGTGLGTTIARQLTELMGGKISVTSVEGQGSCFVVWLPLE 899


>gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1403

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 101/513 (19%), Positives = 187/513 (36%), Gaps = 43/513 (8%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
                         +L  +     + DQ     F N   +++       L  +     + +
Sbjct: 761  RAQAQAARVRLENVLAQINEQFIVLDQQWRYSFINDQVIQVTGKSNEELLGH----NIWD 816

Query: 358  FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                    P+ +N   + E   +V + +    + ++ P  +     +     G TI +  
Sbjct: 817  LF------PDLVNSPFYTECHRAVAEQTVVQVEFFYWPWQRWFENRIYPFAEGVTILV-S 869

Query: 418  NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
            +++ +   E +     +   +  D+    V V  P G     + ++       E      
Sbjct: 870  DISARKQAEKELRESEERFRQMADNAPVMVWVTDPTGYCTYLSKSWYEFSGQNEETGLGF 929

Query: 478  THIRNIAATCSR-------YYNESDGWDLFAAIITSFDDERKS----------LQGTLEL 520
              +  +    S          N+          +  FD E +           L+G  + 
Sbjct: 930  GWLDAVHPEDSEDSRNIFLAANKCQEAFRLEYRLRRFDGEYRWALDVGSPWFGLEGEFKG 989

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
               SV++ S                 +  R  +          KA+ IK+ F+  +S+EL
Sbjct: 990  YIGSVIDIS----------ERKAAEVERDRLLQREQAARTEAEKANRIKDEFLAVLSHEL 1039

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            RSPL  I+G+  LL+T KL     KQ+  +  I  ++ +   L+ D+LD++ +  G + L
Sbjct: 1040 RSPLNPILGWAKLLQTKKLDGATFKQA--LSTIERNAQLQAQLIEDLLDVSRILQGKISL 1097

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            N   + L  ++    +++    +  +I I+   D  +G  + D  RL QI   +LSNA+ 
Sbjct: 1098 NPIPVNLASIIRHSIETVYLAANAKSIDIQTTLDETVGQILGDPARLQQIVWNLLSNAVK 1157

Query: 701  FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
            F+S G  V +           +V + G  I  +    VF+ F        R   G+GLGL
Sbjct: 1158 FTSTGGRVEVLLESVGQSAQITVSDTGKGITSEFLPYVFDYFRQADSTTTRKFGGLGLGL 1217

Query: 759  SIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
            +IV   + LHGG V   S  +    T   + P 
Sbjct: 1218 AIVRHLVELHGGTVGAESPGENQGATFWVKFPL 1250



 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 109/542 (20%), Positives = 199/542 (36%), Gaps = 65/542 (11%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND---ELLEFL 359
             L     I+     A+ ++     +  +N ++  +           P++    E+ + +
Sbjct: 23  QSLKTAVRIMLTSRQAMFVWWGEELINLYNDAYKAIVGGKHPLALGQPASSVWREIWDQV 82

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF--- 416
                     N  T+ E +  + + +   ++T++     T       N  GGT  +    
Sbjct: 83  GPRAASALLNNEGTYDEALLLIMERNGYSEETYY-----TFSYSPVPNDEGGTGGIICAN 137

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI----KLSNP-----AFRSLW 467
            + T ++  E +   L ++   T D  +     F    R+      SNP     A   L 
Sbjct: 138 TDDTGRIIGERQLALLRELAARTADART-----FDEACRVSAKCLESNPYDLPFAMIYLI 192

Query: 468 KTEENRL----SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             E++ +    + G  I N+AA           W     I  +      +L+   E L  
Sbjct: 193 DREKHEVVLAGTCGIDIDNVAAPPKVALQSDSVWPFKKVITENKACLVSNLESFFENLPS 252

Query: 524 SVLEYS-----IIPLPNAQ----------TMLTFVNVTDSVR------------------ 550
              + +     ++P+ ++            +  F    D  R                  
Sbjct: 253 GAWQRTPHQAVVVPIASSGQTGKAGLLVVGLNPFRLFDDDYRRFIDLVAAQISASIANAQ 312

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A     ++ EAL + D  K  F  +VS+E R+PLT ++G  + + T K   L   Q + +
Sbjct: 313 AYEEERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPIEDVLTDKDEPLGPSQQERI 372

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  +   LL LVN +LD + ++AG ++  Y    L+    E+     + +    +R+ 
Sbjct: 373 EIVQRNGLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASVFRSTIERAGMRLM 432

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V           DR+   +I   +LSNA  F+  G  + +           SV + G  I
Sbjct: 433 VNCPPLPEPVYVDREMWEKIVLNLLSNAFKFTLNGE-ISVSLEWVKHSVKLSVNDTGIGI 491

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     +F RF  V  A      G G+GLS+V+  + LH G + + S +   T     I
Sbjct: 492 PEAEIPLLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHQGSIDVVSVEGLGTCFTIFI 551

Query: 789 PS 790
           P+
Sbjct: 552 PT 553



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 85/287 (29%), Gaps = 29/287 (10%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISV-FKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            L L  +  E        +  +    V  + +   ++      DQ     + N    +  +
Sbjct: 744  LKLSYLRQEATRREQGLRAQAQAARVRLENVLAQINEQFIVLDQQWRYSFIN---DQVIQ 800

Query: 228  TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN---NKSYKIVRVLN 284
              G   ++ +G +      ++      +        +TV  +E       + ++      
Sbjct: 801  VTGKSNEELLGHNIWDLFPDLVNSPFYTECHRAVAEQTVVQVEFFYWPWQRWFENRIYPF 860

Query: 285  SFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVEL-- 338
            + G   +  D+S       +L  + E    +     V + + D   Y  + ++S+ E   
Sbjct: 861  AEGVTILVSDISARKQAEKELRESEERFRQMADNAPVMVWVTDPTGYCTYLSKSWYEFSG 920

Query: 339  ----WEIDLAFLATNPSNDEL--LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
                  +   +L      D         +ANK  E    +         Y+ +      W
Sbjct: 921  QNEETGLGFGWLDAVHPEDSEDSRNIFLAANKCQEAFRLEYRLRRFDGEYRWALDVGSPW 980

Query: 393  HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                G+            G I    +++ +   E + + L++ +   
Sbjct: 981  FGLEGEFK----------GYIGSVIDISERKAAEVERDRLLQREQAA 1017


>gi|307266331|ref|ZP_07547870.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918638|gb|EFN48873.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 568

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 170/399 (42%), Gaps = 53/399 (13%)

Query: 402 VIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPDG 454
           + + SN   G +  MF  L++++       TL  +QGE       I  +++GV      G
Sbjct: 214 IKIKSNDEIGKLGEMFNFLSLRLK-----QTLNDIQGEKNKIEAIIQFMTDGVVATDAKG 268

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            I   N A   +   +   L  G  I  I                          E++  
Sbjct: 269 NIIHYNEAAEKMLNVK---LELGMPIEGILNL-----------------------EKEDA 302

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             T+    + VL  +I PL + Q +  +V V   +  +  L          D ++  FV 
Sbjct: 303 VATMNC-GNKVLTVNIAPLKSNQQIEGYVYVLHDITEQHKL----------DAMRKEFVA 351

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+ELR+PL  I  + + L  S + +      ++++ I + +  +  LV D+L L+ +D
Sbjct: 352 NVSHELRTPLATIKSYVETLLYSDVDA--EYLKRFLKIIDSETDRMTRLVKDLLLLSKMD 409

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +    L +    LN+++ +V   ++ + H+ N ++ V           D+ ++ Q+   +
Sbjct: 410 SEDKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQETPRHVYIDKDKMEQVIVNL 469

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           ++NA+ ++ +   + +    D     F V++NG  IP++    +F RF        R   
Sbjct: 470 VTNAIKYTPENGMIKVMTEYDENFATFIVEDNGIGIPKEDLPRIFERFYRVDKARSRELG 529

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGLSIV+  + LH G V+I S     T +  ++P +
Sbjct: 530 GTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLPYQ 568


>gi|307945461|ref|ZP_07660797.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
 gi|307771334|gb|EFO30559.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
          Length = 790

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 110/541 (20%), Positives = 204/541 (37%), Gaps = 61/541 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +       T     L++    +  +D +R   F + S  E+          +   D L
Sbjct: 253 QADEIYAATRTRIDTALNHGRCGLFDWDLSRGRIFWSSSLYEMLG--------HKPKDSL 304

Query: 356 LEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-------N 407
           L F   A+   P+ ++       +                 NG  + +            
Sbjct: 305 LSFAEVADLTHPDDVDLYELATELLEAGGGIVDKMFRMRHANGSWVWLRARGEIQSEPGR 364

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                I +  ++T Q  LE +  T      + I+ +SE   ++  +  + + N  ++ L 
Sbjct: 365 SEPHLIGICIDVTEQHRLEEQSRTADLRLRDAIETISEAFVLWNKNNELVICNSNYQELH 424

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               + ++PGT  +++ A             +   +               +L     L+
Sbjct: 425 GLPTHAVTPGTPYKDVMAAAENTQVAPQPVKISQRVDAP------EGSYEAQLDDGRWLQ 478

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---------------------- 565
            S     +   +    ++T   R E  L ++ + L                         
Sbjct: 479 ISERRTKDGGFVSVGTDITALKRHEEQLIDREKELNATVDDLTRSRKTLQLQAKQLEELA 538

Query: 566 -------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVE 611
                        ++ K+ F+ ++S+ELR+PL  IIGF+D++     G L   K S Y  
Sbjct: 539 DKYSEERNRAENANKAKSEFLANISHELRTPLNAIIGFSDIMNKEMFGPLGTEKYSDYCH 598

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S T LLN++NDILD++ ++AG M +    +   +   +  + ++T   E +I +  
Sbjct: 599 DIHNSGTYLLNVINDILDMSKIEAGRMSIETEDLSAKEAAEDAARIMSTAAREKHIDVTC 658

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +  +    ADR+ L QI   +L+NA+ F+ +  TV LKA ++     F + + G  I 
Sbjct: 659 TVEDGI-QVRADRRALKQILLNLLANAVKFTPEHGTVSLKAHQEKNRICFEISDTGIGIA 717

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +     +   FV   +      +G GLGL+I  S I +HGG + ISS     T +   +P
Sbjct: 718 DKDIARLAQPFVQVENQFTKTHQGSGLGLAIARSLIEIHGGKLEISSELGEGTHVRFLLP 777

Query: 790 S 790
           S
Sbjct: 778 S 778



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 12/160 (7%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GI IDV+++  + +Q         + +  ++ A  ++++N  L   N ++ EL  +   
Sbjct: 370 IGICIDVTEQHRLEEQSRTADLRLRDAIETISEAFVLWNKNNELVICNSNYQELHGLPTH 429

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +       +++    +    P+ +      +     Y++         L +G+ L +  
Sbjct: 430 AVTPGTPYKDVMAAAENTQVAPQPVKISQRVDAPEGSYEA--------QLDDGRWLQISE 481

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                GG + +  ++T     E +     K    T+D L+
Sbjct: 482 RRTKDGGFVSVGTDITALKRHEEQLIDREKELNATVDDLT 521


>gi|299146861|ref|ZP_07039929.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517352|gb|EFI41233.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 621

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 118/541 (21%), Positives = 218/541 (40%), Gaps = 44/541 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+GN K Y I         A      S    + +     + I  NL V I ++D++  
Sbjct: 104 TDENGNTKVYGIAETQEGIHIA------SAHQALQNSERILHNIYKNLPVGIELYDKDGQ 157

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSSE 386
           +        +L + D+     +   D L   +     LPE++  K    EN    ++   
Sbjct: 158 MV-------DLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYDF 210

Query: 387 THKDTWHLPNGQTLHVIVT---------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +  + ++ PN  T  + +T         ++     + +  + T       K         
Sbjct: 211 SKINKYYQPNSTTGFIDLTTKVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFESFFD 270

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD-- 495
              D+   G A F       LS   +             GT +  I    S ++ E    
Sbjct: 271 LVGDYAKVGYAHFDA-----LSRDGYALRSWYRNVGEEEGTPLPEIIGIHSHFHPEDRAV 325

Query: 496 GWDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDS 548
             D    +I       S D   +   G       +VL  +  P  N  + +    ++T+ 
Sbjct: 326 MIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQPQDNIIEMLCINFDITEL 385

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+      +      ++  
Sbjct: 386 KETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSS---LLEEAEDAEEKHL 442

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ QS+  +  E  + 
Sbjct: 443 YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRATE-QVE 501

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I +  +    +F +D+ RL Q+    ++NA+ F+S+GS +++    +  +  FSV++ G 
Sbjct: 502 ILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGS-IVIDYRINGNEVRFSVQDTGM 560

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  +  +++F RFV   +     G GLGL I +S +   GG + + S     +      
Sbjct: 561 GIEPEKQEAIFTRFVKLNNFIA--GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTH 618

Query: 789 P 789
           P
Sbjct: 619 P 619


>gi|160886372|ref|ZP_02067375.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483]
 gi|315921766|ref|ZP_07918006.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156108257|gb|EDO10002.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483]
 gi|313695641|gb|EFS32476.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 621

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 118/541 (21%), Positives = 218/541 (40%), Gaps = 44/541 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+GN K Y I         A      S    + +     + I  NL V I ++D++  
Sbjct: 104 TDENGNTKVYGIAETQEGIHIA------SAHQALQNSERILHNIYKNLPVGIELYDKDGQ 157

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSSE 386
           +        +L + D+     +   D L   +     LPE++  K    EN    ++   
Sbjct: 158 MV-------DLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYDF 210

Query: 387 THKDTWHLPNGQTLHVIVT---------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +  + ++ PN  T  + +T         ++     + +  + T       K         
Sbjct: 211 SKINKYYQPNSTTGFIDLTTKVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFESFFD 270

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD-- 495
              D+   G A F       LS   +             GT +  I    S ++ E    
Sbjct: 271 LVGDYAKVGYAHFDA-----LSRDGYALRSWYRNVGEEEGTPLPEIIGIHSHFHPEDRAV 325

Query: 496 GWDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDS 548
             D    +I       S D   +   G       +VL  +  P  N  + +    ++T+ 
Sbjct: 326 MIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQPQDNIIEMLCINFDITEL 385

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+      +      ++  
Sbjct: 386 KETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSS---LLEEAEDAEEKHL 442

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ QS+  +  E  + 
Sbjct: 443 YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRATE-QVE 501

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I +  +    +F +D+ RL Q+    ++NA+ F+S+GS +++    +  +  FSV++ G 
Sbjct: 502 ILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGS-IVIDYRINGNEVRFSVQDTGM 560

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  +  +++F RFV   +     G GLGL I +S +   GG + + S     +      
Sbjct: 561 GIEPEKQEAIFTRFVKLNNFIA--GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTH 618

Query: 789 P 789
           P
Sbjct: 619 P 619


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 114/547 (20%), Positives = 210/547 (38%), Gaps = 74/547 (13%)

Query: 296  SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEID--LAFLATN 349
            +K   +N+      E  HNL      AI I  Q+  L F N + V L  ++     L   
Sbjct: 506  AKTNQINENNKFIVESYHNLVEVYPEAILIVSQDD-LVFVNSAAVRLLRVNSVEELLGKK 564

Query: 350  PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-- 407
                  LEF+   ++   + N K+ K +          H+  +   +GQ ++V +     
Sbjct: 565  -----FLEFVHPQHREEIEENLKSLKTSQT----LIPLHEVKFLQADGQIIYVEMVGAFL 615

Query: 408  ---PRGGTIWMFENLTVQVDLE-------------------------TKYNTLVKVQGET 439
                +     +  ++T +   E                          +  + +  Q  T
Sbjct: 616  NYQNQPAAQIVARDITRRKQTELALHKTKDELELRVNERTAELINVNRQLQSQLDEQKRT 675

Query: 440  IDHL--------------SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             D L               + +     + +I L N     ++      +        +  
Sbjct: 676  QDALRISENRFEAILSIADDAIISIDSNQQITLFNQGAEKIFGYSAGEVLGQKLDLLLPT 735

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              ++ +         ++       ER+ + G  +  S+   E SI  L   Q  +  V +
Sbjct: 736  RFAQEHRNHVYKFGKSSAHARRMGERQEIFGCRKDGSEFPAEASISKLDLGQESVYTVIL 795

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             D    ++            +++K+ FV  VS+ELR+PLT+I G   +L +  L S + +
Sbjct: 796  RDITERKQ-----------VEKMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSSTSEQ 844

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              + ++  + S+  L+ L+NDILD+  +++G +K+      L DL+N     +     + 
Sbjct: 845  GKRLLQIATDSTERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKA 904

Query: 666  NI-RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +      S+       AD  R++Q  + + SNA+ FS  GSTV L         + +V+
Sbjct: 905  GVSLSIHNSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVTVQ 964

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  IPED  +S+F RF        R   G GLGL+I +S +  HGG + + S     +
Sbjct: 965  DTGRGIPEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSILGEGS 1024

Query: 783  TINCRIP 789
            +    +P
Sbjct: 1025 SFYFTLP 1031


>gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
 gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
          Length = 632

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 138/258 (53%), Gaps = 2/258 (0%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N        +  +  R  + L E  E L++ D++K+  +  VS+ELR+PLT+I G+ +L+
Sbjct: 376 NKMAEDIRKSHEELKRHTKELKESYEKLKEIDKLKSEIISIVSHELRTPLTSIKGYVELV 435

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +G LNS Q + +E  + +   L  L++D+LDL+ +++G +K +   + + D++ +V
Sbjct: 436 LDGLMGELNSNQRRCLEIANNNIDRLKRLIDDMLDLSKIESGTIKFDIKDVKIKDMVVDV 495

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             S+  ++ E NI IK   +  L + V D+ R+ Q+   ++ NA+ FS     + + A R
Sbjct: 496 LNSLGPQIKEKNIEIKCEIEENLTAKV-DKDRITQVLINLIENAIKFSPVKGVIEIHAFR 554

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVS 773
           DN      +K+ G  IP+     +F++F      + ++ G GLGL+I +S I  HGG + 
Sbjct: 555 DNNYAHIIIKDYGPGIPKKDLDKIFDKFYQVNFPKIKKDGAGLGLAICKSIIEAHGGKIW 614

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S     T+ +  +P +
Sbjct: 615 VESELGKGTSFHVLLPIE 632


>gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 145/850 (17%), Positives = 290/850 (34%), Gaps = 113/850 (13%)

Query: 15  EICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHS 74
            + +  +  +  +G +    L T      L R R   A+++ +  +    + +   ++ +
Sbjct: 95  SLASGAASDVLQWGMLVASGLLTSALSHALQRTRRREAEQLRQLAATRQSLTESERRFQA 154

Query: 75  LLTENNCLTIVWDGKDET-PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYI-KLSKATE 132
              E   + I   G D     +  +L + +     +    +F++          L +   
Sbjct: 155 -AFEQAAVGIALVGPDGRWLRVNRKLCEIVGYGADELLARTFQDITHPDDLRTDLDQVGR 213

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI-LSLDGIY---SELAETTLKCKKL 188
            LR E     +   T     ++ +G +      + +   +DG       + E     K  
Sbjct: 214 LLRGE-----ISTYTLEKRYVRKDGSLLWIQLTVSLVRRIDGEPDHFISVVENIQARKAA 268

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
                +F          +   D    I + N ++ +     G       G          
Sbjct: 269 EEERRLFSEALRQASQPLLMADAQFHISYVNPAFSQLL---GYAPSDLAGRHVSCLTPPD 325

Query: 249 KKRMIS--------------SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
              + +              S  L++  C+        N    +  R       A   +D
Sbjct: 326 PAALQAQAEGIVELKTLGRFSGPLDRLACDGTVIPLAANIGPVRDARGEVVAWVASY-LD 384

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV--------ELWEIDLAFL 346
           +      +  L      +      + + D    +++ N + +        EL       L
Sbjct: 385 LRPLREKDKLLRMLALAIEQSPANVVVTDLESKIEYVNDALLHDSGYSRAELLGTSARSL 444

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
            +  +  ELL+ +  A         + W+  + +  K    +          T  V+   
Sbjct: 445 LSPQTTPELLQGIGEALARD-----RRWRGQLINRRKEGSEY---------TTAAVVSAL 490

Query: 407 NPRGGTIWMF----ENLTVQV----------------------DLETKYNTLVKVQ---G 437
               G +  F    +++T ++                       LE    +L + Q    
Sbjct: 491 QDERGRVTHFVAVQQDITDRLHDAAELERYRCHLEVLVAERTRQLEEVNRSLSEQQQFVR 550

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
              D +   V  F P    + +N A+   W    + +  G H R +        NE    
Sbjct: 551 NVADAVPALVGYFDPQLYCRFANAAYLEWWGLRPDEV-VGLHARELIGDEMFRRNEP--- 606

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ------TMLTFVNVTDSVRA 551
               ++  +   E   LQ  L     S+ E  I  +P+ Q       ++   ++T+   A
Sbjct: 607 ----SMRAALRGESPRLQRALPHTDGSLRETLIAYVPDRQDGQVRGFIVVVSDITEIKVA 662

Query: 552 ERALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           E+ +   N  L             K++F+ ++S+E+R+P+  IIG T L+      SL  
Sbjct: 663 EQQMAALNAQLAARAIEAEGATRAKSAFLANMSHEIRTPMNAIIGLTHLMARDTRDSL-- 720

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + +  I +++  LL ++ND+LDL+ +DAG + L  +   L+++L+   + +    +E
Sbjct: 721 -QRERLGKIDSAAKHLLQIINDVLDLSKIDAGKLVLEDTEFNLDEVLSRAFELVGESANE 779

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDF 719
             + + + +D        D  RL Q    +L+NA+ F+  G  V L+       R     
Sbjct: 780 KGLELVLDTDRLPSHLRGDPTRLSQALINLLANAVKFTHAG-WVRLRGELLAEDRQRVQV 838

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I  +   S+FN F        RR  G GLGL++ +  + L GG + + S 
Sbjct: 839 RFEVQDTGEGIEPERFGSLFNAFEQADASTTRRHGGTGLGLALTQHLVTLMGGEMGVRSE 898

Query: 778 DEGVTTINCR 787
               +T    
Sbjct: 899 PGVGSTFWFT 908


>gi|321312444|ref|YP_004204731.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018718|gb|ADV93704.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 579

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 148/371 (39%), Gaps = 27/371 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++              I+++  G+ +    G I L N ++   +    N +        
Sbjct: 223 MEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHM-------- 274

Query: 483 IAATCSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                 R Y+++   +    ++      + ++  L      +     E   +P+      
Sbjct: 275 ----LRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI------ 324

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +   D  +    +       +K ++++  FV +VS+EL++P+T+I GFT+ L    +
Sbjct: 325 ---MGPDDEWKGIVLVFHDMTETKKLEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM 381

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                  S+++  I   S  L +LV D+LDL+ ++     L+  T     +L E++  + 
Sbjct: 382 ED-KEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLK 440

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E  I + +           D  RL Q+F  +++NA+ ++ +G +V +       D 
Sbjct: 441 HKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDI 500

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V ++G  I ++    +F RF            G GLGL+IV+  I  H G + ++S 
Sbjct: 501 QIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSE 560

Query: 778 DEGVTTINCRI 788
               T     +
Sbjct: 561 LGRGTVFTVTL 571



 Score = 42.6 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 280 VRVLNSFGEA--GIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           +R  +  G A   +AID+ +     + Q      ++ N+   + + D   ++   NRS+ 
Sbjct: 205 IRRSDKLGHAMNSLAIDLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYA 264

Query: 337 ELWEIDLAFLATNPSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           + + I+   +     +D      +  L     + E    K  +  I    +  E      
Sbjct: 265 KQFHINPNHMLRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI 324

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             P+ +            G + +F ++T    LE 
Sbjct: 325 MGPDDEWK----------GIVLVFHDMTETKKLEQ 349


>gi|307152913|ref|YP_003888297.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983141|gb|ADN15022.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1613

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 139/849 (16%), Positives = 284/849 (33%), Gaps = 119/849 (14%)

Query: 47   QRNSLAKKVNETYSFLSE-------ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQL 99
            Q   L +        L E       + +  +++ +     N   + W    E   I    
Sbjct: 513  QTRQLQQANQRLQQELEERQRTETALRETKARFQA--FMKNAPLLAWINSLEGKMIYANQ 570

Query: 100  HQRIDIPQTDTDLLS--FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG 157
                 + +++ ++++   +         K       + + G+    + ET    AI+ +G
Sbjct: 571  ALLNLLDKSEQEVIAHTLQELFPQEFAQKYQDNNAYVARTGE----ILETLES-AIQPDG 625

Query: 158  RVSGSCA--FLRILS-----LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
                     F   L      + G+  ++         L    + F+ + ++++ + +   
Sbjct: 626  SPKNYLVRKFPIFLEEQDPWIGGMAVDITAQQKAEAALITSEARFRQIAENIEEVFFINS 685

Query: 211  QA-GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR---MISSSALEKNFCET- 265
                +I++ + +Y+K             G        + ++     I+     + F E  
Sbjct: 686  ADVSEIIYISPAYEKIWGRTCQSLYDNPGTWFDALHPDDRQNVEMAIARQQQGEPFQEEY 745

Query: 266  VSTLEHGNNKSY--KIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
                  G  +    +   + N  G+     G+A D+++       L  +      LT +I
Sbjct: 746  RIIRPDGEVRWILSRAFPIYNDLGQLQHYVGLAADLTERKQAEAALQQSEAKFRELTESI 805

Query: 320  A----IFDQNRYLQFHNRSFVELWEI--------DLAFLATNPSND--ELLEFLRSANKL 365
            A    +  +N  + + + ++  +W            ++L +    D   +   L +  K 
Sbjct: 806  AQVFYLMGKNGEIIYISPAYQAIWGKTCESLYQDPGSWLVSIHPEDLSRVATALDAQIKK 865

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH-------VIVTSNPRGGT------ 412
             E  +       +    +         +   GQ          +                
Sbjct: 866  GEPFDEIYRIIGLNEEIRWIHAQSFPTYDKKGQIYRFPGFAEDITARKLAEDALQHQLNK 925

Query: 413  IWMFENLTVQVDL----ETKYNTLVKVQGETIDH-------------------------- 442
              + + +T ++      +  + T  +  GE                              
Sbjct: 926  TLLLQKITDKIRQSLDPKEIFQTAARQIGEAFQVNRCLLHTYTQSSVNQVPVVAEYLWGG 985

Query: 443  ----LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES---- 494
                LS  ++V      +KL             + +     ++NI   C R   +S    
Sbjct: 986  YPSILSVEISVADNPHIMKL----LEQETAIASDYVDEDPLLQNIQPLCRRMGLKSMLAV 1041

Query: 495  ----DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                 G       +   D  R   +  +EL+     +  I              +     
Sbjct: 1042 GTFYQGKPNGIISLHQCDGYRPWTKDEIELIEAVAAQLGIAIAHARLLEGEKRRLKQLSE 1101

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
              +AL    +    A++ K+ F+ ++S+E+R+P+  ++GF+DLL+         +  +Y+
Sbjct: 1102 KNKALGRAKKEADIANKAKSEFLANMSHEIRTPMNAVLGFSDLLQDII---TEPEAKEYL 1158

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E ISAS   LL L+NDILDL+ ++AG + L+Y  I L  L+ E++Q    +  E  + +K
Sbjct: 1159 EAISASGKTLLRLINDILDLSKIEAGKLTLHYEPINLRILIAEIEQIFRHQATEKGLNLK 1218

Query: 671  VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-----DFIFSV 723
               D KL      D  RL QI   ++ NA  F+  G   + +    +       D   SV
Sbjct: 1219 SEIDPKLPCGVELDEVRLRQILLNVVGNAFKFTDTGQIKITVNCRANPEHSEKIDLKISV 1278

Query: 724  KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++ G  I  D    +FN F  +      +  G GLGL+I +  + + GG V + S     
Sbjct: 1279 EDTGIGISPDNQTKIFNAFTQSEGQSNRKYGGTGLGLAITQRLVQMMGGTVHLQSQQGQG 1338

Query: 782  TTINCRIPS 790
            +      P 
Sbjct: 1339 SKFTFYFPK 1347


>gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 631

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 90/506 (17%), Positives = 208/506 (41%), Gaps = 33/506 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRY--LQFHNRSFVELWEIDLAFLATNPSNDEL-----LEF 358
               EI  N  V   ++   +   ++F + +  +       F + N    ++     L+F
Sbjct: 138 KELEEIYKNSPVVAFLWTAEKDWPVEFVSDNITQFGYTPEDFTSGNMIYGDIVHPDDLDF 197

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETH---KDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           +R+     E    + + +    + ++ E     + +  +P+          +   G I  
Sbjct: 198 VRNDITRLEIEGRQFFSKEYRILTRAEEPRWVAERSLMVPDE-----DGRPSYYQGIII- 251

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T +   E       K      ++   G+  F  DG I   N  F  +     +++ 
Sbjct: 252 --DVTDRKLAEQALLETEKRFRLIFENSPLGIFTFDKDGIITHCNTNFAMIMGASMDKII 309

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLP 534
                 NI  +            +FA     ++ +   +L G +  +             
Sbjct: 310 G----LNILRSIKDKKMTDAVKPVFARKTGHYEGKCVSALSGKVTPIKADYSPNIAEDGS 365

Query: 535 NAQTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPLTNI 587
               +    ++T  + +E AL +        NE L+  D++K+ F+ +VS+EL++PLT+I
Sbjct: 366 ILGGIGIIEDITTRIESEEALKKYAEELAIANEELKSLDQMKDRFLSNVSHELKTPLTSI 425

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G+T+L+    LG+L+ +Q +  + +  ++  L  LV+ +L ++   +G ++  +  + +
Sbjct: 426 KGYTELIYDESLGTLSEQQKEVEKTVLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSI 485

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +++    Q +  ++ E  + ++      + +   DR +L  + + ++ N++ F+ +G +
Sbjct: 486 VEIVEMTLQDLKIQIEEKKLAVEKDIPNDIPTINGDRDKLTDMLTNMVDNSIKFTPEGGS 545

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFI 765
           +      ++      +K+NG  IP DM   +F RF     +   +  G GLGL I +  +
Sbjct: 546 LKFTIKEEDEFIHIVLKDNGIGIPPDMIPMLFQRFYQIDASRTRKYGGTGLGLYICKEIV 605

Query: 766 NLHGGHVSISSS-DEGVTTINCRIPS 790
             H G + + S  +   T ++ ++P 
Sbjct: 606 TAHKGKIWVESKGENKGTEMHIQLPK 631



 Score = 46.1 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 109/344 (31%), Gaps = 46/344 (13%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKK---RMISSSALEKNFCETVSTLEHGNNK 275
           N+ Y      + + F +      ++   +      R+++ +   +   E    +   + +
Sbjct: 183 NMIYGDIVHPDDLDFVRNDITRLEIEGRQFFSKEYRILTRAEEPRWVAERSLMVPDEDGR 242

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
                         GI IDV+        L  T +    I  N  + I  FD++  +   
Sbjct: 243 ---------PSYYQGIIIDVTDRKLAEQALLETEKRFRLIFENSPLGIFTFDKDGIITHC 293

Query: 332 NRSFVELWEIDLAFLATNPSNDELLE-FLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           N +F  +    +  +        + +  +  A K         ++    S      T   
Sbjct: 294 NTNFAMIMGASMDKIIGLNILRSIKDKKMTDAVKPVFARKTGHYEGKCVSALSGKVTPIK 353

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             + PN      I       G I + E++T +++ E       +                
Sbjct: 354 ADYSPN------IAEDGSILGGIGIIEDITTRIESEEALKKYAE---------------- 391

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                + ++N   +SL + ++  LS  +H      T  + Y E    +    +     + 
Sbjct: 392 ----ELAIANEELKSLDQMKDRFLSNVSHELKTPLTSIKGYTELIYDESLGTLSEQQKEV 447

Query: 511 RKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            K++      L+ L DS+L  S     N Q +   V++ + V  
Sbjct: 448 EKTVLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSIVEIVEM 491


>gi|157374520|ref|YP_001473120.1| Signal transduction histidine kinase-like protein [Shewanella
           sediminis HAW-EB3]
 gi|157316894|gb|ABV35992.1| Signal transduction histidine kinase-like protein [Shewanella
           sediminis HAW-EB3]
          Length = 1468

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 121/515 (23%), Positives = 204/515 (39%), Gaps = 46/515 (8%)

Query: 301 VNDQLTHTYE-------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +QL    E        L   ++ +A+ D    + + N+ F E+       L       
Sbjct: 427 TKEQLQQALESLEGQKFALDQHSI-VAVTDLKGTITYVNQLFTEISGYASEELLG----- 480

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSNPRG- 410
                 R+   L    + + + + ++ V    E           NG    V  T  P   
Sbjct: 481 ------RNHRILNSGHHPRGFFKQMYEVITKGEVWNAEICNRAKNGTLYWVDTTVVPLKD 534

Query: 411 ------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                   I +  ++T ++    K N  + +    ++    G+ V    G+I   N  F 
Sbjct: 535 AEGHPHSYIAIRTDITERMTASIKANEALSLMHSVLESTDNGILVTSIQGKILQVNNRFM 594

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            LWK ++  L  G     IA        +S        I   + D    L  TL  +   
Sbjct: 595 ELWKIDDKTL-IGRDDSEIAHYAKSQLVDSAS--FIQGIERLYRDPELELFDTLAFIDGR 651

Query: 525 VLEYSIIPLPNAQTM----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           V E   +P+ +   +     +F +VT+S++    L    E    A + K+ F+  +S+E+
Sbjct: 652 VFERVSLPMMSEGGVLGRVWSFRDVTESMKIRSELMLAKEGAELAVKAKSEFLASMSHEI 711

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  ++G   LL  +K   L+  Q + V    +S+  LL L+NDILD + +DAG ++L
Sbjct: 712 RTPMNGVLGMLGLLLNTK---LSDFQRRRVSIAQSSAESLLTLINDILDYSKIDAGKLEL 768

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
                 L  +L E  + +A    + ++ + +   G   S V  D  RL Q  + +  NA+
Sbjct: 769 ENLDFNLRGMLGEFAEGMAHLAQDKDLELILDVKGVEYSMVNGDPGRLRQALTNLTGNAI 828

Query: 700 DFSSKGSTVI---LKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
            F+ +G  VI   L    D   +    SV + G  I ED   S+F+ F        R   
Sbjct: 829 KFTKQGEVVIKAELVPCDDETLWRLKCSVSDTGIGIAEDKIDSLFDSFSQVDASTTRKYG 888

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           G GLGL+IV+   NL GG VS+ S +   +     
Sbjct: 889 GTGLGLAIVDKVCNLMGGSVSVESEEGVGSCFRFE 923



 Score = 70.7 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 109/295 (36%), Gaps = 38/295 (12%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
           T  + ++    +   K   D    +    D  G I + N  +   TE  G   ++ +G +
Sbjct: 427 TKEQLQQALESLEGQKFALDQHSIVA-VTDLKGTITYVNQLF---TEISGYASEELLGRN 482

Query: 241 RKLFKEEIKKR-----MISSSALEKNFCETV-STLEHGNNKSYKIVRVLNSFGEAG---- 290
            ++       R     M       + +   + +  ++G         V     E      
Sbjct: 483 HRILNSGHHPRGFFKQMYEVITKGEVWNAEICNRAKNGTLYWVDTTVVPLKDAEGHPHSY 542

Query: 291 IAI--DVSKEITV----NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           IAI  D+++ +T     N+ L+  + +L +    I +      +   N  F+ELW+ID  
Sbjct: 543 IAIRTDITERMTASIKANEALSLMHSVLESTDNGILVTSIQGKILQVNNRFMELWKIDDK 602

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQTL-HV 402
            L     + E+  + +S     + ++  ++ + I  +Y+  E    DT    +G+    V
Sbjct: 603 TLIGR-DDSEIAHYAKS-----QLVDSASFIQGIERLYRDPELELFDTLAFIDGRVFERV 656

Query: 403 IVTSNPRGGT---IWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
            +     GG    +W F ++T  + + ++           VK + E +  +S  +
Sbjct: 657 SLPMMSEGGVLGRVWSFRDVTESMKIRSELMLAKEGAELAVKAKSEFLASMSHEI 711


>gi|241204212|ref|YP_002975308.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858102|gb|ACS55769.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 511

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 95/511 (18%), Positives = 196/511 (38%), Gaps = 40/511 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                IL +L   I + D    +   N   +++  +    +    +           + L
Sbjct: 4   HSFESILESLPQGIVLLDPAGTVTAFNSRTLDILGLPQGAIRKGMNI----------HGL 53

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
           P   + ++      +   +       + L +G  + +    +  GG I  +E+++  + +
Sbjct: 54  PGAADCRSVASRRST---AGGPPTSQFALSDGGMVSLTCAPSRDGGWILSYEDISTLIRV 110

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E       +     + ++  G+ +F     + L N ++  ++   +    PGT + +I A
Sbjct: 111 EDSLTEQHRRFDAALSNMPHGLCMFDSTKNLILCNASYARMYNLPDLLTQPGTPLVDILA 170

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
             SR  N       +  ++             + L    V++ +  P+     + T  +V
Sbjct: 171 YRSREGNGPADTAAYFDVVFEATARGAPASQNIVLADGRVIKITHNPMQTGGYVATHEDV 230

Query: 546 TDSVRAERALTEKNEAL-------------------------RKADEIKNSFVQHVSYEL 580
           T +VR    L   ++ L                         R  +E++  FV   S+E 
Sbjct: 231 TKTVRLAEELRRHHDQLEATVKSRTAEVERQARELERMLAQERNINELQRQFVAMASHEF 290

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I      L   +        S  V+ I AS T +++L+  IL    +D G + +
Sbjct: 291 RTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIRASVTRIVDLMESILSAGRLDTGKIDI 350

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +Y    L  L+    +  +T     + R+ +  DG      AD + L Q+F+ +LSNA+ 
Sbjct: 351 SYDACALRSLIKTCCERQSTIA--KSHRLVLDIDGLPEFIDADPRTLAQVFTNLLSNAVK 408

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           ++   S + + A  + G+   S+ ++G  I  +    +F R+          G G+GL++
Sbjct: 409 YAPGTSEIRVTAWAETGNVKVSISDDGVGIDAEDVPRLFQRYFRARTSTGIAGTGIGLNL 468

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           V+  + LH G + + S+    +T    +P K
Sbjct: 469 VKQIVELHNGSIEVRSARGCGSTFIVTLPIK 499



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 94/342 (27%), Gaps = 26/342 (7%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
             F+ + +SL   +   D AG +   N              +K +         + +   
Sbjct: 4   HSFESILESLPQGIVLLDPAGTVTAFNSRTLDILGLPQGAIRKGMNIHGLPGAADCRSVA 63

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSK----EITVNDQLTH 307
              S          +  + G      +        G      D+S     E ++ +Q   
Sbjct: 64  SRRSTAGGPPTSQFALSDGG---MVSLTCAPSRDGGWILSYEDISTLIRVEDSLTEQHRR 120

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               L N+   + +FD  + L   N S+  ++ +            ++L +       P 
Sbjct: 121 FDAALSNMPHGLCMFDSTKNLILCNASYARMYNLPDLLTQPGTPLVDILAYRSREGNGP- 179

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             +   + + +F              L +G+ + +       GG +   E++T  V L  
Sbjct: 180 -ADTAAYFDVVFEATARGAPASQNIVLADGRVIKITHNPMQTGGYVATHEDVTKTVRLAE 238

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +          T+              R        R L    E  L+   +I  +    
Sbjct: 239 ELRRHHDQLEATVKS------------RTAEVERQAREL----ERMLAQERNINELQRQF 282

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
               +      L      +    RK      E LSD V +  
Sbjct: 283 VAMASHEFRTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIR 324


>gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1076

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 110/524 (20%), Positives = 202/524 (38%), Gaps = 33/524 (6%)

Query: 287 GEAGIAIDV-SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G+  + ++    E  +  Q      +  + +  +   +  R L   NR++   + I  + 
Sbjct: 283 GQIAMTMERKRAEADLELQTARLKALFDSSSHLLWTVNTRRQLSSMNRNY---YNIVYSQ 339

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHVIV 404
           L   P  +  +E  R   KL    +    +E     ++    + +  W   NG       
Sbjct: 340 LGEEPKINTSIE--RYGWKLFNPDDKPMIREKYNLAFQGKPQYFELHWGQKNGGPDWYEF 397

Query: 405 TSNP----RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
             NP      G +     +  N+T                   I+   +        G I
Sbjct: 398 HLNPIISGENGEVEEVSGIARNITENKKALLDLQKSENKFRNIIESFIDIYYRSDLAGNI 457

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + +P+        E  +      +          N      L +  IT+++   K   G
Sbjct: 458 TMISPSVYKHTGYREEEVIHQKVDQFFEDVVDSSKNIKTL--LKSGNITNYEVRVKRKDG 515

Query: 517 TLELLSDSVLEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++      +L   +I        +      +VT+ +R+   L +  E      ++K  F+
Sbjct: 516 SIRQF---MLNIRMIKNEKGTPIEVEGVARDVTELLRSADELKKAKEEAEHLLKVKEQFL 572

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  IIG  D+L  ++   L+  Q +YV  I  SS  LL ++NDILDL+ +
Sbjct: 573 ANMSHEIRTPMNGIIGMIDVLNETE---LDKSQREYVNTIRNSSETLLTILNDILDLSKL 629

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFS 692
           +AG M +      L ++L  +      K  E N  +K   D K+    + DR RLLQI S
Sbjct: 630 EAGQMNVEKKPFDLKEMLKNLVALFKQKAAETNNLLKFEWDPKVHPYIIGDRIRLLQILS 689

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            + SNA+ F+  G+ +I        +      F V + G  I E+  K +F  F      
Sbjct: 690 NLTSNAIKFTQNGNVIIRIQWEGQDEKTQFLRFEVADTGIGISEENQKKLFTSFQQLDIS 749

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++   G GLGL I +  + + GG + ++S     +     +P+
Sbjct: 750 TKKAFGGTGLGLVISKQLVEIMGGEIGLTSKLGEGSVFWFTLPA 793


>gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
 gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
          Length = 1755

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 143/806 (17%), Positives = 294/806 (36%), Gaps = 80/806 (9%)

Query: 42   ILLIRQRNSLAKKVNETYSFLSEICDQLSK-YHSLLTENNCLTIVWDGKDETPEIIGQLH 100
            +++ RQ   L   + E  +  +   D+  +   ++L     +   WD +          H
Sbjct: 462  VVIERQMKELNAHLEEMVATRTAELDRARRVLRTVLDAVPSMIGYWDKQLVNRVANHAYH 521

Query: 101  QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK-LRKEGQSFDLVAETQNDC-------- 151
                +       +S  + L    +       +  LR + Q+F+      +          
Sbjct: 522  TLFGVDPDTLPGMSMVDLLGKDLFAANRPHIDAVLRGDEQTFERAILGPDGKERHSLAHY 581

Query: 152  -AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS-VFKVLFDSLDFLVWHR 209
               +I+G V G         ++   +EL E   +          + + + + L + V   
Sbjct: 582  IPDRIDGEVQG------FYVMEHDVTELVEGRQQLAAALRENQVLLQTINEQLLYSV--S 633

Query: 210  DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI-----SSSALEKNFCE 264
            D  G I+ AN  +       G   ++ IG    LF   +           +    K +  
Sbjct: 634  DPNGVIIEANDQF---CLVHGYTREEIIGRDHHLFNSGLHPAAFWQNMWDTVLANKAWHG 690

Query: 265  TV-STLEHGNNKSYKIVRVL--NSFGE----AGIAIDVSKEITVNDQLTHTYEILHNL-- 315
             + +  + G+   +  V     +S G+      + IDV++    +++      +L N+  
Sbjct: 691  EICNKGKDGSLLWFDTVIAPCLDSEGQLERFVALRIDVTERRAADEERKRLNVLLGNVLR 750

Query: 316  ---TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
                V+I   DQ+  +   N     +       +    +   +        +  E     
Sbjct: 751  SASEVSIIATDQDGLITIFNSGAQRMLGYQEDEMVGRCTPAVIHLPDEVNARGEELSRQY 810

Query: 373  TWKENIFSVYK------SSETHKDTWHLPNGQTLHVIVT----SNPRG---GTIWMFENL 419
                  F V+       + ET + T+   +G    V++      + +G   G + +  ++
Sbjct: 811  GQAIEGFRVFVHVPEFVAPETREWTYVCKDGSWRRVMLAVTAMRDEQGVLTGYLGIATDI 870

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR------ 473
            T Q     +    +       D    GV  +  +  I   NP    ++   E +      
Sbjct: 871  TEQQQARQELELALDQLASAADVAEMGVWKWTLEENIVQWNPKMFEIYALPEVKGGVLDF 930

Query: 474  --LSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYS 529
                   H  ++ AT +      DG  ++  +  +   D + + +Q   ++  D+     
Sbjct: 931  EGWRSRLHPDDVDATMASLQVALDGRGVYDPVFRVVHPDGQIRYVQAAGKVGRDAKGRA- 989

Query: 530  IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                     +    ++T   + E +L    +   +A+  K+ F+ ++S+E+R+P+  ++G
Sbjct: 990  ------VSFVGINQDITIRKQFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLG 1043

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               L++ ++   L+++Q  YV    +++  LL L+NDILD + +DAG ++L+     L D
Sbjct: 1044 MLQLVRQTQ---LDTRQQDYVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLED 1100

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +L E+   ++   H   + +    D  L      D+ R+LQI   +  NA+ F+  G  V
Sbjct: 1101 MLRELAVVLSGNQHHKTVELMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTEAGQVV 1160

Query: 709  I-LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
            I L A R +        SV + G  I  +    +FN F        RR  G GLGL I +
Sbjct: 1161 IHLSALRQDAASVTLQVSVTDTGIGITPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQ 1220

Query: 763  SFINLHGGHVSISSSDEGVTTINCRI 788
              + L G  + + S     +  +  +
Sbjct: 1221 RLVALMGSELRVDSEPGRGSCFSFEL 1246



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 98/314 (31%), Gaps = 50/314 (15%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-LATNPSNDEL 355
           ++  + D       I+ +    I        +   NR   +++       L    +   +
Sbjct: 337 RQQQLIDAQARMAAIVESSIDGIIGKTLQGVVTSWNRGAEDIFGYRADEALGKTMAQLVV 396

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGT 412
            + L       E +  +  +      + +   HK      NGQ + V V+ +P     G 
Sbjct: 397 PDDLVYE---EEDILARIGRGERLDHFTTRRRHK------NGQLIDVSVSVSPIIDDSGR 447

Query: 413 IW----MFENLTVQVDLETKYNTLV------------------KVQGETIDHLSEGVAVF 450
           I        +++ QV +E +   L                   +V    +D +   +  +
Sbjct: 448 IVGTSKTVRDISEQVVIERQMKELNAHLEEMVATRTAELDRARRVLRTVLDAVPSMIGYW 507

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIR----NIAATCSRYYN---ESDGWDLFAAI 503
                 +++N A+ +L+  + + L   + +     ++ A    + +     D      AI
Sbjct: 508 DKQLVNRVANHAYHTLFGVDPDTLPGMSMVDLLGKDLFAANRPHIDAVLRGDEQTFERAI 567

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +     ER SL   +    D  ++   +             V    +   AL E    L+
Sbjct: 568 LGPDGKERHSLAHYIPDRIDGEVQGFYV-----MEHDVTELVEGRQQLAAALRENQVLLQ 622

Query: 564 KADEIKNSFVQHVS 577
             +E     +  VS
Sbjct: 623 TINE---QLLYSVS 633


>gi|254415604|ref|ZP_05029363.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177554|gb|EDX72559.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1156

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 208/546 (38%), Gaps = 54/546 (9%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           A +A ++ +  T   +L HT + L     N  +A+  +D +  +Q  ++   +++     
Sbjct: 120 AQLAQEIRERKTAETELQHTLQRLTFHVENSPLAVIEWDSHHRVQRWSQQAEQIFGWKAE 179

Query: 345 FLATNPSNDELLEFLRSANKL------------PE----QLNWKTWKENIFSVYKSSETH 388
                  ++  L F    + +            P       N+      I   + +S   
Sbjct: 180 EALGRQIDELQLVFTEDRDAVNVVMTNLLDGSTPRSICCNRNYTKEGSVIDCEWYNSALR 239

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK----------YNTLVKVQGE 438
            D  +L +  +L + +TS  +  T     N+ ++  +E +               +   +
Sbjct: 240 DDADNLVSILSLALDITSRKQAETALKQVNVELEHRVEERTTQLQQLNQHLEQERQQLRQ 299

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I      +A+F    R    +  + +++  +E  L    H  +I       + E+    
Sbjct: 300 IITVAPVAMAMFDRQMRYLAHSQQWLTIYSLDEQSLINRCHY-DIFPELPEPWREAHQRA 358

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L   IIT  +D  +   GT      ++  +          +L    + + V A  A    
Sbjct: 359 LQGEIITKSEDVWQRADGTTIYEHWAIHPWYTSTGDVGGIVLACFPINELVEARDA---- 414

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                    +K+ F+ ++S+E+R+P+  ++G   LL  +    LN +Q  Y   I + + 
Sbjct: 415 ---ALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQT---DLNPQQLNYTRTIESCAK 468

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++NDILD++ ++AG M L      L+  L+ V   +A +     + + ++ +  + 
Sbjct: 469 HLLTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAILVESNVP 528

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------DFIFSVKNNG 727
               +D  RL QI   ++ NA+ F+  G  V+  A   +              FSV + G
Sbjct: 529 RQLQSDPGRLRQILLNLVGNAIKFTDAGEVVVRVAVSRHQPTDTLSQSSVTLRFSVTDTG 588

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I       +F  F     +   +  G GLGL I +  + L GG + + S     +T  
Sbjct: 589 IGISAADQSKLFQAFSQVEASTTRRYGGTGLGLVICQQLVELLGGKIGVESKVGQGSTFW 648

Query: 786 CRIPSK 791
             +P K
Sbjct: 649 FTVPVK 654


>gi|298243600|ref|ZP_06967407.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297556654|gb|EFH90518.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1121

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 129/775 (16%), Positives = 281/775 (36%), Gaps = 73/775 (9%)

Query: 55   VNETYSFLSEICDQLSKYHSLLTENNCLTIVWD-GKDETPEIIGQLHQRIDIPQTDTDLL 113
              +  +   ++ +     H L        +VW    D   +   Q  +  ++ Q D + +
Sbjct: 368  EEQKRTE-QQLKESREHLHVLTEMVPQ--LVWTTSPDGRVDYCNQ--RFQEVTQADFEQI 422

Query: 114  SFENW---LKFHHYIKLSKATEKLRKEGQSFDLVAETQND-----CAIKIEGRVSGSCAF 165
                W   L      ++    +     G+ F+     ++                   A 
Sbjct: 423  RDYGWRQYLHPEDAERVLMLRQHSLTTGELFESEHRLKDGQTGAYRWFLARAMPVRDEAG 482

Query: 166  LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
              +    G  +++ E     ++L      F+VL +++  LVW     G   + N  +   
Sbjct: 483  QIVKWF-GTCTDIDEQKQTEQRLKESEEQFRVLAETVPQLVWVARPDGQHEYTNQHWCDY 541

Query: 226  TETEGIVFQKAIGESRKLFKEEIKKRMIS------SSALEKNFCETVSTLEHGNNKSY-- 277
            T       Q       +    + ++R  +       +     + E +   + G  + +  
Sbjct: 542  TGFTLENVQSDRWAHLQCIHPDDRERNRALWQHALETGDMFEYEERLRHAQTGEYRWFLA 601

Query: 278  KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQ 329
            + + V N  G+     G + D+ ++  V   L  + E L  L   +     +   +   +
Sbjct: 602  RALPVRNEAGQIVKWFGTSTDIEEQKRVEQHLKESQESLRVLAETVPQLVWVRRSDGLYE 661

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            + N+ + +   +         + +++   L +  ++    + +  + ++     +   ++
Sbjct: 662  YTNQRWCDYTGL---------TLEQVQSDLWAYLQVIHPGDREGNRAHLQRALDTGTMYE 712

Query: 390  DTWHLPN---GQTLHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGET 439
                + N   G+   +++ + P     G  +  F    ++  +  +E       +     
Sbjct: 713  HEARVRNAQTGEYRWLLMRAMPVRDETGQIVKWFGTGTDIDERKRMEEALRQSQERIRAL 772

Query: 440  IDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            ID    G+  V G +  +  +N A+  +    +  +          A         +   
Sbjct: 773  IDSNIIGIVSVEGEEDVLVEANDAYLHMTGYTQEDVRSR-------ALSVESTTPPEHAP 825

Query: 499  LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
            LF   +       +      EL+     + S +P+     +       +  R   A    
Sbjct: 826  LFQRALQELVTRGQHTPFETELVCQ---DGSRLPVLVGGVIF-----QERPRRVVAFVLD 877

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            N A ++ ++ K+ F+   S+ELR+PLT +   T LL           Q+  +  +     
Sbjct: 878  NSARKELEQRKDDFISMASHELRNPLTALKMQTTLLHRQLAKQ--GIQAPALSSMKTQIN 935

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L+ LV ++LD++ + AG ++    T+ L+ LL E+  ++      + I   V+      
Sbjct: 936  KLIRLVEELLDVSKIQAGRLEYRQETVDLDALLREIANTMQQTNPSHTI---VMRGAVQT 992

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            S +ADR RL Q+F+ +LSNA+ +S    TV +  +         V+++G  IP +    +
Sbjct: 993  SLLADRDRLGQVFTNLLSNAIKYSPGAETVEMDLSATEDAVTIRVRDHGLGIPREQRDKI 1052

Query: 739  FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F RF   A   QR   G+G+GL IV   +  HGG +++ S     +T    +P +
Sbjct: 1053 FERFYRVAGSTQRAIPGLGMGLYIVAEIVKRHGGTITVESDVGNGSTFTVTLPKR 1107



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/416 (12%), Positives = 133/416 (31%), Gaps = 34/416 (8%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G  +++ E     ++L        VL + +  LVW     G + + N  +++ T+ +   
Sbjct: 362 GTCTDIEEQKRTEQQLKESREHLHVLTEMVPQLVWTTSPDGRVDYCNQRFQEVTQADFEQ 421

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCE----TVSTLEHGNNKSY--KIVRVLNSF 286
            +          ++  +  M+   +L           +   + G  + +  + + V +  
Sbjct: 422 IRDYGWRQYLHPEDAERVLMLRQHSLTTGELFESEHRLKDGQTGAYRWFLARAMPVRDEA 481

Query: 287 GEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVEL 338
           G+     G   D+ ++     +L  + E    L   +         +   ++ N+ + + 
Sbjct: 482 GQIVKWFGTCTDIDEQKQTEQRLKESEEQFRVLAETVPQLVWVARPDGQHEYTNQHWCDY 541

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
               L  + +     +    L+  +    + N   W ++        E  +   H   G+
Sbjct: 542 TGFTLENVQS-----DRWAHLQCIHPDDRERNRALW-QHALETGDMFEYEERLRHAQTGE 595

Query: 399 TLHVIVTSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
               +  + P     G  +  F    ++  Q  +E       +      + + + V V  
Sbjct: 596 YRWFLARALPVRNEAGQIVKWFGTSTDIEEQKRVEQHLKESQESLRVLAETVPQLVWVRR 655

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            DG  + +N  +         ++   + +            E +   L  A+ T    E 
Sbjct: 656 SDGLYEYTNQRWCDYTGLTLEQVQ--SDLWAYLQVIHPGDREGNRAHLQRALDTGTMYEH 713

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
           ++     +      L    +P+ +      +   T  ++ +  R E AL +  E +
Sbjct: 714 EARVRNAQTGEYRWLLMRAMPVRDETGQIVKWFGTGTDIDERKRMEEALRQSQERI 769



 Score = 88.8 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 74/484 (15%), Positives = 153/484 (31%), Gaps = 55/484 (11%)

Query: 113 LSFENW--LKFHHYIKLSKATEKLRKEGQS--FDLVAETQNDCAIKIEGRVSGSCAFLRI 168
           L    W         +L  A  +   +G++  F+ + + +    + +      + A    
Sbjct: 178 LVEGPWWSSSPPSQAQLRAAIARA-SKGETVHFEALVQPREGMNLHL------AFAITPR 230

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           +  +     L    +         +      D++  L W     G     N  ++  T  
Sbjct: 231 MDAEHHIKYLVLAGIDITARKRAEADIHTFIDAIPQLFWTGRPDGYHDSFNQRWRDYTCQ 290

Query: 229 EGIVFQKAIGES-RKLFKEEIKKRMIS---SSALEKNFCETVSTLEH---GNNKSYKIVR 281
                ++A GE   +    E ++R+ S    +       ET   L H   G  + + +  
Sbjct: 291 ---STEEAQGEGWMQCLHPEDRQRVRSVWQRTVQTGGVYETELRLRHGTTGEYRWFLVRA 347

Query: 282 --VLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFH 331
             V N  G+    AG   D+ ++     QL  + E LH LT  +         +  + + 
Sbjct: 348 LPVRNETGQIVKWAGTCTDIEEQKRTEQQLKESREHLHVLTEMVPQLVWTTSPDGRVDYC 407

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N+ F E+ + D          +++ ++       PE    +       S   + E  +  
Sbjct: 408 NQRFQEVTQAD---------FEQIRDYGWRQYLHPEDAE-RVLMLRQHS-LTTGELFESE 456

Query: 392 WHLPNGQT---LHVIVTSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETID 441
             L +GQT      +  + P     G  +  F    ++  Q   E +     +      +
Sbjct: 457 HRLKDGQTGAYRWFLARAMPVRDEAGQIVKWFGTCTDIDEQKQTEQRLKESEEQFRVLAE 516

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--PGTHIRNIAATCSRYYNESDGWDL 499
            + + V V  PDG+ + +N  +          +      H++ I               L
Sbjct: 517 TVPQLVWVARPDGQHEYTNQHWCDYTGFTLENVQSDRWAHLQCIHPDDRERNRALWQHAL 576

Query: 500 FAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               +  +++  R +  G         L          +   T  ++ +  R E+ L E 
Sbjct: 577 ETGDMFEYEERLRHAQTGEYRWFLARALPVRNEAGQIVKWFGTSTDIEEQKRVEQHLKES 636

Query: 559 NEAL 562
            E+L
Sbjct: 637 QESL 640



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 11/157 (7%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 IL  L  A+ + D+   + + N S   +       L  N S       L S + 
Sbjct: 15  HETLLTILETLPGALFVLDEADTIVYANASAQAMLGAAPETLVGN-SFWRCAPQLVSTSL 73

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
              Q   KT +    +  +       TW       LHV ++    GG    F  + V   
Sbjct: 74  Y--QAVRKTKQTRALTEVEYVSPVIQTW-------LHVHLSPT-IGGLTLQFHEMGVPAH 123

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +        +  + +D++  G+    P+G +   N 
Sbjct: 124 CQETVPQRESLCMDVLDNVHAGIVFLTPEGIVLDINE 160


>gi|330507649|ref|YP_004384077.1| signal transduction histidine-protein kinase [Methanosaeta concilii
           GP-6]
 gi|328928457|gb|AEB68259.1| signal transduction histidine-protein kinase [Methanosaeta concilii
           GP-6]
          Length = 656

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 103/495 (20%), Positives = 196/495 (39%), Gaps = 37/495 (7%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
           ++++  +   I +  +    ++ N +F  +               EL+         P  
Sbjct: 30  HQVMATVGQGIVVSSEGWRFEYVNPAFARM---------VGRMPKELIGRSMDELIHPHD 80

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQ 422
                   +     ++S +++      +G    V VT  PR       G+I    +LT +
Sbjct: 81  RPILIQARSRRQAGETS-SYEARLIRSDGCVFPVQVTGTPRWQDGKFFGSIVAVTDLTER 139

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              E +           +D + + + +   +G          S+       L  G +I +
Sbjct: 140 KRFEDELKKSEAENRLLLDSIPDSIFLLDKEGNFLDYRTPNSSIL-YAPAELFMGKNIHS 198

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTM 539
           I           D  +L    I       K      +L ++  +   E  I        +
Sbjct: 199 IMP--------QDLVELTMNNIEMARQSGKMQVFEYQLPANGEIKHFEARINLCEGGDFL 250

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               +VT+  R++  L +  E    A + K+ F+ ++S+E+R+PL  +     L      
Sbjct: 251 ALVRDVTERKRSDEMLWKAKEEAEAAAKAKSEFLANMSHEIRTPLNAV---IGLTGLLLD 307

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q  Y+E +  SS  LL+++NDILD + +D G+M+L +S   L   +      + 
Sbjct: 308 TDLTPEQRNYLEIVRNSSDSLLSVINDILDFSKIDGGMMELEHSPFDLRRCIESTMDLMV 367

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILK--AARD 715
           T++ E  + +KV+ D +L +  V D  RL Q+ + +LSNA+ F+ KG   V ++  A  +
Sbjct: 368 TRVAEKGLVLKVVLDDQLPTMLVGDASRLRQVLANLLSNAVKFTDKGFVEVSVRGNAIPE 427

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
             +  F V + G  +P+D    +F  F         +  G GLGL+I +  + + GG + 
Sbjct: 428 GFELRFDVLDTGIGMPQDKLDRLFMPFSQIDSSITRRYGGTGLGLAISKRLVGMMGGRIW 487

Query: 774 ISSSDEGVTTINCRI 788
             S+    +T    I
Sbjct: 488 AKSNPGVGSTFTFTI 502


>gi|118587761|ref|ZP_01545171.1| PAS domain protein [Stappia aggregata IAM 12614]
 gi|118439383|gb|EAV46014.1| PAS domain protein [Stappia aggregata IAM 12614]
          Length = 784

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 115/550 (20%), Positives = 217/550 (39%), Gaps = 69/550 (12%)

Query: 295 VSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            ++    +D    T   +          +  +D +R   F + S  EL   +        
Sbjct: 248 ATRAEAADDMYAATRARIDTALTHGRCGLFDWDLSRGRMFWSSSLYELLGREPK------ 301

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI----VT 405
             D++L F   A+   P+ ++     E++    ++           +G  + +     + 
Sbjct: 302 --DDILSFADVADITHPDDIDLLGLAEHLLESGETLVDETFRMRHADGSWIWLRARGEIQ 359

Query: 406 SNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           S P       I +  ++T Q +L  +         + I+ +SE   ++     + + N  
Sbjct: 360 SEPGRAEPHLIGICIDITEQHELAEQSRMADLRLRDAIETISEAFVLWNARNELVICNSN 419

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--L 520
           ++SL     + + PGT  +++ A  S            A    +      +  G+ E  L
Sbjct: 420 YQSLHSLPNSVIKPGTPYKDVMAAAS--------NAEVAPHPVTLRQRGGAPDGSYEAQL 471

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
                L+ S     +   +    ++T   + E  L +  + L+                 
Sbjct: 472 EDGRWLQISERRTKDGGFVSVGTDITALKKHEEKLVDSEKRLKATVTDLQKSRQTLEVQA 531

Query: 566 --------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NS 604
                               ++ K+ F+ ++S+ELR+PL  IIGF+D++     G +   
Sbjct: 532 RQLVEMADKYQEEKTRAEAANKAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPVGTD 591

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           + S Y + I +S T LLN++NDILD++ ++AG M +   T+  ++   +  + +     E
Sbjct: 592 RYSDYCKDIYSSGTYLLNVINDILDMSKIEAGRMTIETETVNASESAEDASRIVTGAATE 651

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            NI +       + S  AD++ L QI   +L+NA+ F+    TV LKA        F V 
Sbjct: 652 KNITVTTDVVENV-SVHADKRALKQILLNLLANAVKFTPDNGTVTLKARPRGDKLHFEVI 710

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I E   + +   FV   +      +G GLGL+I  S + LHGG + I S  +  T
Sbjct: 711 DTGIGISERDIERLAQPFVQVENQFTKTHQGSGLGLAIARSLVELHGGALVIKSEVKKGT 770

Query: 783 TINCRIPSKE 792
           T++  +P  E
Sbjct: 771 TVSFTLPLAE 780



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GI ID++++  + +Q         + +  ++ A  +++    L   N ++  L  +  +
Sbjct: 370 IGICIDITEQHELAEQSRMADLRLRDAIETISEAFVLWNARNELVICNSNYQSLHSLPNS 429

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +       +++    +A   P  +  +         Y++         L +G+ L +  
Sbjct: 430 VIKPGTPYKDVMAAASNAEVAPHPVTLRQRGGAPDGSYEA--------QLEDGRWLQISE 481

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                GG + +  ++T     E K     K    T+  L
Sbjct: 482 RRTKDGGFVSVGTDITALKKHEEKLVDSEKRLKATVTDL 520


>gi|268318298|ref|YP_003292017.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335832|gb|ACY49629.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 785

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 122/706 (17%), Positives = 230/706 (32%), Gaps = 80/706 (11%)

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
           ++   I +E   + +    R + L GI+ +L       +KL    S +++L +     V+
Sbjct: 90  RDGTRIPVEISAARTTLGDRPV-LIGIFRDLRPRHELEQKLHEAESHYRILAEQNLIGVY 148

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
              Q G  ++ N         E             +  E++     +          TV 
Sbjct: 149 LV-QDGRFVYVNQYIADFLGYERPEDLIGRSLVELVHPEDLPAVTANIQKRLSGEMRTVH 207

Query: 268 TLEHGNNKSYKIVRV---------LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL--- 315
               G ++   +V V                G+ +  S+             IL +L   
Sbjct: 208 YSLRGFHRQGYLVEVEVIGSATTYRGRPAVLGVMLHTSEARRQARFYETESRILQDLLRG 267

Query: 316 -TVAIAIFDQ-----NRYL---------QFHNRSFVELWEIDLAF------LATNPSNDE 354
              A A+ D         L             R +     +   +      L   P    
Sbjct: 268 APQA-ALLDALCTAIEARLPDGICTILLLCEGRLYRGASHMPPEYDALIEGLEIGPEVGS 326

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
                 +   +     +   +   +         +  W  P           N RG  + 
Sbjct: 327 CGTAAFTKQPVWVSDVFSDPRWAAYRALAERFNFRACWSYP---------IRNARGEVLG 377

Query: 415 MF---------------ENLTVQVDL------ETKYNTLVKVQGETIDHLSEGVAVFGPD 453
            F               E LT    L        +  T      E     S GV +  P+
Sbjct: 378 TFAVYFPTERAPEPHEKEVLTRGASLAALILETRRLQTENARLAEVARQTSTGVLITDPE 437

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R+   N  F  L            + R      +    + +  ++    +         
Sbjct: 438 RRVLWLNEGFTRLTGYT----LADVYGRRPPEFLAGERTDRNTLEIIGERLREGLPVHTR 493

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEI 568
           +    +  +    E  I PL +A+      M    ++T  V  E+ L         A  +
Sbjct: 494 IYFYRKDGTGFWDELRIEPLRDAEGRLIGFMGLNHDITALVEYEQELKRARAEAETAARL 553

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K +F+ ++S+E+R+PL +I+GF +LL      S      ++   I  S   LL L+NDIL
Sbjct: 554 KAAFLANMSHEIRTPLNSILGFAELLDEQLAASGQESLREFTGIIQRSGRRLLRLINDIL 613

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +L+ ++A  + L      L+ ++ E    +     +  + + V ++      + D  RL 
Sbjct: 614 ELSRLEADRLVLRTEPCALHTIVKEAVAELEPLACQKGLTLTVHTEAVPP-VLGDPHRLH 672

Query: 689 QIFSKILSNAMDFSSKGST-VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           QI + ++ NA+ ++ +G   V ++   ++G    +  V + G  I  D    +F  F   
Sbjct: 673 QIVTNLVGNALKYTEQGEVRVEVQETTEDGVRQVVLRVTDTGPGIDPDFLPHLFEPFQRA 732

Query: 746 AHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                R  G GLGL+I +  +    G +++ S+    TT     P+
Sbjct: 733 PSENDRSEGSGLGLAITKRLVEQMNGRITVESAPGNGTTFTVTFPA 778



 Score = 45.3 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 64/215 (29%), Gaps = 24/215 (11%)

Query: 311 ILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           +      AI + D +   L   N    EL       +                +   E+ 
Sbjct: 15  LFEEANDAIFLADVETGRLLDANPRACELIGRTRDAIRGMHHL--------ELHPREERE 66

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVD 424
            ++   E+     +  +  +      +G  + V +++       R   I +F +L  + +
Sbjct: 67  RYRAIFEHRAEAGRGIDRAEVVHR--DGTRIPVEISAARTTLGDRPVLIGIFRDLRPRHE 124

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           LE K +          +    GV +   DGR    N       +   + L        I 
Sbjct: 125 LEQKLHEAESHYRILAEQNLIGVYLV-QDGRFVYVN-------QYIADFLGYERPEDLIG 176

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            +     +  D   + A I      E +++  +L 
Sbjct: 177 RSLVELVHPEDLPAVTANIQKRLSGEMRTVHYSLR 211


>gi|16079962|ref|NP_390788.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310851|ref|ZP_03592698.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315177|ref|ZP_03596982.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320094|ref|ZP_03601388.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324376|ref|ZP_03605670.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|130130|sp|P23545|PHOR_BACSU RecName: Full=Alkaline phosphatase synthesis sensor protein phoR
 gi|143331|gb|AAA22663.1| alkaline phosphatase regulatory protein [Bacillus subtilis]
 gi|2293271|gb|AAC00349.1| signal transduction protein kinase [Bacillus subtilis]
 gi|2635375|emb|CAB14870.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 579

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 148/371 (39%), Gaps = 27/371 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++              I+++  G+ +    G I L N ++   +    N +        
Sbjct: 223 MEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHM-------- 274

Query: 483 IAATCSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                 R Y+++   +    ++      + ++  L      +     E   +P+      
Sbjct: 275 ----LRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI------ 324

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +   D  +    +       +K ++++  FV +VS+EL++P+T+I GFT+ L    +
Sbjct: 325 ---MGPDDEWKGIVLVFHDMTETKKLEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM 381

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                  S+++  I   S  L +LV D+LDL+ ++     L+  T     +L E++  + 
Sbjct: 382 ED-KEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLK 440

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E  I + +           D  RL Q+F  +++NA+ ++ +G +V +       D 
Sbjct: 441 HKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDI 500

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V ++G  I ++    +F RF            G GLGL+IV+  I  H G + ++S 
Sbjct: 501 QIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSE 560

Query: 778 DEGVTTINCRI 788
               T     +
Sbjct: 561 LGRGTVFTVTL 571



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 280 VRVLNSFGEA--GIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           +R  +  G A   +AID+ +     + Q      ++ N+   + + D   ++   NRS+ 
Sbjct: 205 IRRSDKLGHAMNSLAIDLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYA 264

Query: 337 ELWEIDLAFLATNPSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           + + I+   +     +D      +  L     + E    K  +  I    +  E      
Sbjct: 265 KQFHINPNHMLRRLYHDAFEHEEVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI 324

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             P+ +            G + +F ++T    LE 
Sbjct: 325 MGPDDEWK----------GIVLVFHDMTETKKLEQ 349


>gi|117924080|ref|YP_864697.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607836|gb|ABK43291.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 911

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 105/649 (16%), Positives = 228/649 (35%), Gaps = 38/649 (5%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLD--FLVWHRDQAGDILWANISYKKNTET 228
           L G   +++      + L     + +   D+L   + ++H +    + W N ++++ +  
Sbjct: 123 LSGTGIDISARKRVEETLQAEQQLTQASLDALPDTYFLFHPETGKALRW-NRAFREISGF 181

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE---HGNNKSYK-IVRVLN 284
                      S    + ++     +   L K     +       +G    ++  +  L 
Sbjct: 182 SDRQIGALPAPSSYYSQSDLSIMATALEQLRKTGTAKLEINLICHNGQTIPFEYAISSLA 241

Query: 285 SFGE---AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
             G+     I  D+S+    E  + +       +   +++ + + ++   +   N  F  
Sbjct: 242 HQGQNLIISIGRDISERRLAENQLRESEQKFLRLFKEVSIPLVLVNKQGMVTHINDRFTT 301

Query: 338 LWEIDLAFLATNPSNDELLEFL--RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
           L    +A +   P  D   +        +   +  W    +   +  +     +      
Sbjct: 302 LLGYSMADI---PDLDSWWQRAYPDPRYRAWVKETWTLAVQKAMADGQDIAPLEYQVTCK 358

Query: 396 NGQTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           NG+   + ++    G  T+    ++T +                 I      + V    G
Sbjct: 359 NGEQREIQISGVTFGEDTLATLIDVTERSRAAKTLQQERDFADSLIHTAQTIILVLDTQG 418

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS- 513
           RI   NP    L       +                 + +    LFA  +    ++    
Sbjct: 419 RIMRINPYMEELSGYTLAEVQGKDWWNTFL----PQQDHATLRALFAKAVGHIHNQGHVN 474

Query: 514 --LQGTLELLSDSVLEYSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
             L     LL       ++I   +     +    ++T     E    E       A++ K
Sbjct: 475 PILTKDGRLLEIEWYNKTLIDSHDEVMGLLSIGYDITHKRALEAENREALARAESANQAK 534

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+E+R+PL  ++G  DLL  S    L  +Q+  +E +  +   L+ L++DILD
Sbjct: 535 SEFLAIMSHEIRTPLNVLLGMGDLLHESL---LTEEQTGQLELLIKAGKHLVVLIDDILD 591

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           L+ ++ G + L    +  + L   +   +  +  E  +        +L  +V  D  RL 
Sbjct: 592 LSKIEFGGLTLTREPLQPHRLFLLICDIVRLQAQEKGLTFNCDIPTELPPWVLGDEGRLR 651

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           QI   +L NA+ F+ +G   +  A +  G     ++ ++G  I       +F++F     
Sbjct: 652 QIMINLLHNAIKFTQQGHVTLKIAYQPAGSLFSITISDSGIGIAAKHLNHIFDKFSQADS 711

Query: 748 --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI--NCRIPSKE 792
               +  G GLGL+I  + + L GGH+++ S     +       +P  +
Sbjct: 712 SISRRYGGTGLGLAIARNLVTLMGGHLTVESCVNQGSHFQLTLELPPTQ 760



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 100/278 (35%), Gaps = 29/278 (10%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
                  ++ ++  L+    +FD    L   N++F  +   D   L       + L+F+ 
Sbjct: 17  TQQSEAFSHAVIEGLSGIFYLFDGQARLIRWNKNFATVTGYDDTTLQGK----QALDFIA 72

Query: 361 S-ANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                L      + + E   ++  +   H  ++T +  +G  + +       G  I    
Sbjct: 73  PCDQALVSSRIQQVFSEGHATIEAALRAHNGQETPYFLSGSLVMIDEQPYLSGTGI---- 128

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSP 476
           +++ +  +E       ++   ++D L +   +F P+ G+    N AFR +    + ++  
Sbjct: 129 DISARKRVEETLQAEQQLTQASLDALPDTYFLFHPETGKALRWNRAFREISGFSDRQIG- 187

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL------LSDSVLEYSI 530
                      S YY++SD     + + T+ +  RK+    LE+            EY+I
Sbjct: 188 ------ALPAPSSYYSQSD----LSIMATALEQLRKTGTAKLEINLICHNGQTIPFEYAI 237

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             L +    L      D      A  +  E+ +K   +
Sbjct: 238 SSLAHQGQNLIISIGRDISERRLAENQLRESEQKFLRL 275


>gi|239616520|ref|YP_002939842.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505351|gb|ACR78838.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 559

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 133/244 (54%), Gaps = 3/244 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + + + N  +++ + +K+ F+  +S+ELR+PL +I GF  ++     G +N +Q + 
Sbjct: 302 KMIKTIEQDNIKIKELERLKSEFLATMSHELRTPLNSITGFVSMILQGISGEINEEQRKQ 361

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  + +SS  LLNL+NDILD++ ++AG M  +     + D+++EV Q+++  + +  +++
Sbjct: 362 LSMVHSSSIHLLNLINDILDISKIEAGRMSFSKERFNIKDVISEVVQNVSLLISKKEVKL 421

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                 ++    +D++R+ QI   ++SNA+ F+ KG  V +K   D      SV + G  
Sbjct: 422 ITEIPDEIPEIYSDKRRVFQILLNLVSNAIKFTEKGE-VRIKCEVDGNKLKISVSDTGKG 480

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I E+  +++F  F     + R + +G GLGL + +  + L GG + + S     +T    
Sbjct: 481 IKEEDMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTFTFT 540

Query: 788 IPSK 791
           +P K
Sbjct: 541 LPLK 544


>gi|298290750|ref|YP_003692689.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
 gi|296927261|gb|ADH88070.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
          Length = 770

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 99/441 (22%), Positives = 188/441 (42%), Gaps = 53/441 (12%)

Query: 395 PNGQTLHVIVT----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            +G  + +           G     + +  ++T +  L  +  T      + I+ +SE  
Sbjct: 321 ADGHWVWLRARAEVVPQDNGEPPHLVGIAVDVTEERRLAERTATADMRLRDAIESISESF 380

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            ++    R+ + N  F+SL    +  ++PGT    +AA   +                  
Sbjct: 381 VLWDASNRLVMCNSKFQSLHGFGDANVAPGTEFETVAALARQPVVRIPLRPEDR------ 434

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK--- 564
             E  +     +L     L+ +     +   +    ++T   R E  L E  + L     
Sbjct: 435 -PEEGARAFEAQLEGGRWLKVTERRTKDGGYVSVGTDITALKRHEERLMESEKRLMALVA 493

Query: 565 --------------------------------ADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                                           A+  K+ F+ ++S+ELR+PL  IIGF++
Sbjct: 494 DLRKSQQTLEMQALQLAELAQNYADEKTKAEDANRAKSEFLANMSHELRTPLNAIIGFSE 553

Query: 593 LLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           L+++   G L + K ++Y   I  S   LL+++NDILD++ ++AG M LN   + L++++
Sbjct: 554 LMESGLFGPLGSDKYNEYCRDIRDSGRYLLDVINDILDMSRIEAGRMHLNLQPVELDEVV 613

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +  + ++ +  E  I +   +DG + S  AD++ L QI   +LSNA+ F+ +   V ++
Sbjct: 614 TDSIRVMSVRADEKQITVAADTDGAV-SLEADKRALKQITLNLLSNAIKFTPENGRVSVR 672

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
             R     +  ++++G  IP+     +   F           +G GLGL+I +S + LHG
Sbjct: 673 TRRSARAALLVIEDSGIGIPKAALAKIGKPFEQVESQFTKTHKGSGLGLAIAKSLVELHG 732

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + I SS+   TT+  R+P 
Sbjct: 733 GTMRIRSSEGVGTTVIIRLPL 753



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (11%)

Query: 264 ETVSTLEHGNNKSYKIVR----VLNSFGE----AGIAIDVSKEITVNDQLT----HTYEI 311
           + V  ++H +     +      V    GE     GIA+DV++E  + ++         + 
Sbjct: 313 DRVFRMKHADGHWVWLRARAEVVPQDNGEPPHLVGIAVDVTEERRLAERTATADMRLRDA 372

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANKLPEQLN 370
           + +++ +  ++D +  L   N  F  L     A +A     + +    R    ++P +  
Sbjct: 373 IESISESFVLWDASNRLVMCNSKFQSLHGFGDANVAPGTEFETVAALARQPVVRIPLRPE 432

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
            +   E     +++         L  G+ L V       GG + +  ++T     E +  
Sbjct: 433 DR--PEEGARAFEA--------QLEGGRWLKVTERRTKDGGYVSVGTDITALKRHEERLM 482

Query: 431 TLVKVQGETIDHL 443
              K     +  L
Sbjct: 483 ESEKRLMALVADL 495


>gi|254411490|ref|ZP_05025267.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181991|gb|EDX76978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1342

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 163/371 (43%), Gaps = 22/371 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            LE +   L +V    I      +A+F  + R    +  + ++   E   +    H  ++
Sbjct: 533 SLERERRQLQQV----IASAPMAMAMFDNEMRYMAHSQKWLTVQGLEGESIIGRCHY-DV 587

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                 ++ +     L   +IT+ +D  +   G++  +      ++I P   +   +  +
Sbjct: 588 IPDVPEHWKQIHQRALTGQVITNPEDIWERSDGSIVYMR-----WAINPWYTSNGQVGGI 642

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +      E  L E  EA  +A   K+ F+ ++S+E+R+P+  ++G   LL  ++   L 
Sbjct: 643 VIATDQINE--LVEAREAALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQTQ---LT 697

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S+Q  Y + I  S+  LL ++NDILD + ++AG M+L      L+  +  V   +AT+  
Sbjct: 698 SRQRDYAQTIRRSADHLLTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAE 757

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718
             N+ +  + D K+      D  RL Q+   + +NA+ F+ +G  VI      A   N  
Sbjct: 758 AKNLELATLVDRKVPRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETATSKNAT 817

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F+V + G  I  +  + +F  F    +   R   G GLGL+I +  ++L GG + + S
Sbjct: 818 LHFAVSDTGVGISPEGQEKLFQSFSQVDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVES 877

Query: 777 SDEGVTTINCR 787
                +T    
Sbjct: 878 QVGKGSTFWFT 888



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 58/155 (37%), Gaps = 17/155 (10%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           ++  +     +++ +  +A+A+FD       H++ ++ +  ++   +      D + +  
Sbjct: 533 SLERERRQLQQVIASAPMAMAMFDNEMRYMAHSQKWLTVQGLEGESIIGRCHYDVIPD-- 590

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------RGGT 412
                +PE       +     V  + E   D W   +G  +++    NP        GG 
Sbjct: 591 -----VPEHWKQIHQRALTGQVITNPE---DIWERSDGSIVYMRWAINPWYTSNGQVGGI 642

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +   + +   V+        V+ + + + ++S  +
Sbjct: 643 VIATDQINELVEAREAALEAVRFKSKFLANMSHEI 677


>gi|317052667|ref|YP_004113783.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947751|gb|ADU67227.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 753

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 123/747 (16%), Positives = 271/747 (36%), Gaps = 47/747 (6%)

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
              +  + +++ G  E  E        +   +   + L    WL+    ++L+ A + + 
Sbjct: 17  FHASPFIQLLFRGNGELAEAS---DGALRALRCQREKLPEHPWLRQTDALQLNNAVKMVA 73

Query: 136 KEGQSFDLVAETQNDC-AIKIEGRVSGSCAFLRILSLDGIYSELAE------TTLKCKKL 188
           + G+      +       +++      S     +L+     ++            + ++L
Sbjct: 74  RTGEPAVTAIQLPQGEIFLELTQVSLTSQQTCWVLATQTELTDTIASGSSPGLQKRKEEL 133

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
             +   ++   +  +  VW  +     ++ +  +K+           ++ + ++    + 
Sbjct: 134 LANRQRWQFALEGTNIGVWDWNIQSSEVYFSPRWKEILGYRDHELPNSLEQWQQRIHPDD 193

Query: 249 KKRMISSSALEKNFCETVSTLE------HGNNKS-------YKIVRVLNSFGEAGIAIDV 295
            +R++ +     +  + +   E       GN +            R        G   D+
Sbjct: 194 YQRVMQAHEPAFSKSDRLYRSEYRLRHRDGNYRWISSQGKVMSWARDGTPLRMIGTHADI 253

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++   + +Q      IL   T ++ I   +  + F N     +  ++     T  S D  
Sbjct: 254 TERKILEEQQERMVRILEATTDSVNIATPDGTMIFWNSHGRAMVGVEPDEDVTAISFDLF 313

Query: 356 -----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
                L+ L +   +P  +    W+       +  +T   T          VI+    + 
Sbjct: 314 HPPKSLKIL-TRVAIPSAITNGIWQGENVITNRHGKTIPVT---------QVIIAHRDQQ 363

Query: 411 GTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G +     +  +++ Q  +E    +  +     ++    GV +    G I+  NPA    
Sbjct: 364 GNLEYLSSIMRDMSPQKKVEEALRSSEQRLWRLLESTPLGVVIINSCGTIEWVNPAMCHK 423

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                  L+ G  +  I    SR       ++ F    TS  +E K ++   E     ++
Sbjct: 424 VHYHFESLA-GHSLTKILPEESRMAWH-QWFEQFGNAHTSSSEEWKFVRRGGESFLAEIV 481

Query: 527 EYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             S         M+ +  ++T   R E  L        + +E+K++FVQ VS+E R+PL 
Sbjct: 482 STSFADTSGQWRMVAYVTDITKRKRFEDELLRSLRQQEELNELKSTFVQMVSHEFRTPLA 541

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G  +LLK         ++ ++++ I +    ++ ++ +IL L  +D+G    + S +
Sbjct: 542 GIMGSAELLKKYLERLSPERRDEHLDTILSGVQRMVFMMEEILALGAMDSGQTNFSPSPV 601

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  +   ++  + +      I++             D   L  I + +LSNA+ +S   
Sbjct: 602 DLVAMCRAIQDQLHSIFPGQRIQLDFRDIPTCAML--DESLLHHILTNLLSNALKYSPAT 659

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
           S V         +  F V + G  IPE     +F  F   ++    +G G+G+ IV+  +
Sbjct: 660 SPVHFSIFNTTKELCFRVTDFGIGIPESDRGRLFEAFFRGSNASHIQGTGIGMMIVKRCL 719

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
           +LH G + I S     +T    IP  +
Sbjct: 720 DLHNGTIQIQSKPNQGSTFTVTIPLSQ 746


>gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
 gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
          Length = 836

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 93/446 (20%), Positives = 189/446 (42%), Gaps = 31/446 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPN--GQTLHVIVTSNPRGGTI--------WMFENLTVQVDLE 426
                 +       ++ +PN  G+++ V V     G            +  +++ +   +
Sbjct: 378 KALDSARLKGAFDVSFRVPNAEGKSIWVDVRGQSVGARNQLGFLRLNGVALDVSDERMAQ 437

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA- 485
           ++         + I+ +S+   ++    R+ + N  F   +  +E  L  GT    I   
Sbjct: 438 SRAQRAEARLLDAINSVSDAFVLWDRRHRLLMWNKTFGETFGIDERFLRVGTPRELIDQV 497

Query: 486 ---TCSRYYNESDGWD-LFAAIITSFD----DERKSLQGTLELLSDSVLEYSIIPLP--- 534
                 R+    D  D ++ A + +       E ++L+G   L    +    I       
Sbjct: 498 MQIAIRRHQPAPDARDGVYEAELNNGRWIQIAESRTLEGGRVLTGTDITAVKIQEEFRRR 557

Query: 535 -----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                 A            +   R           A+  K+ F+ ++S+ELR+PL  I G
Sbjct: 558 NEEELQALVQKLEQARQQQMILARKYEMAKIRAEAANHAKSEFLANMSHELRTPLNAING 617

Query: 590 FTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           F++++ T   G L +++  +Y   I  S   LL+L+NDILD++ ++AG M L    + L+
Sbjct: 618 FSEIMATEMFGPLGHARYKEYAGDILGSGQHLLSLINDILDMSKIEAGKMTLRIEPVSLD 677

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++ +  + +  +  +  ++I+V    +L    AD + L QI   +L+NA+ F+ +  TV
Sbjct: 678 EVIEDTLRLVRQRAEKAGLKIRVHM-PQLPEIEADFRALKQILLNLLTNAIKFTPQHGTV 736

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
            + AA  + +   +V + G  I     + +   F    +     + G GLGL++ +S I 
Sbjct: 737 TISAAMTDNNVHIAVADTGIGIAAKDMERLARPFEQIENQFSKTKEGTGLGLALTKSLIE 796

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
           +H G + I S++   TT+N  +P ++
Sbjct: 797 MHSGRLEIDSTEGQGTTVNVILPIRQ 822


>gi|21227050|ref|NP_632972.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20905373|gb|AAM30644.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1]
          Length = 397

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 138/257 (53%), Gaps = 2/257 (0%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + ++   N+      E  L    +     +  KNSF+ ++S+ELR+PL ++IGF+DLL  
Sbjct: 119 ECLMHTCNINGQKELETTLLRAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLE 178

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G +N+KQS+YV  I  S   LL ++N++LD++ ++AG   L Y  + +  L+ EV+ 
Sbjct: 179 GAFGPMNTKQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYEDVDVASLIGEVRM 238

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++ +      I +++  D  +G+  AD  +L QI   ++SNA+ F+     V++ A +  
Sbjct: 239 NLLSPASVKKINVELKIDPSVGNVEADISKLRQILYNLVSNAIKFTPARGKVVISACKKE 298

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G     V +NG  I ED  + +F  F        R   G GLGL IV +F++LHGG +S+
Sbjct: 299 GVLEVKVSDNGIGISEDSYEKIFMPFTQADSSAARGYGGAGLGLFIVRNFVDLHGGDISV 358

Query: 775 SSSDEGVTTINCRIPSK 791
           +S     +T    IP+K
Sbjct: 359 NSEVGKGSTFTFTIPAK 375


>gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 587

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 162/396 (40%), Gaps = 28/396 (7%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIK 457
            V + +    G +    N      LE +   + + Q      + +++ GV       RI 
Sbjct: 213 RVRIKAKDEIGQLAGAINFMAS-SLEQQMYEISENQQRLAGVLTNMTSGVIFISEQRRIM 271

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L NPA   L  T  + +    HI                + L   I    D   K  Q  
Sbjct: 272 LVNPAVEKLLGTAGHEIVGKLHIEA-----------GKSFGLSQYIDRCLDRSEKFRQEV 320

Query: 518 -LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +    + +L+ +  P         ++N     R    +      +R+ +++++ FV +V
Sbjct: 321 HIYYPQERILDVNFAP---------YINFKGESRGVVVVLHDITDIRRLEKMRSEFVANV 371

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+P+T+I GFT+ L    +         +++ IS  S  L  ++ DILDL+ ++  
Sbjct: 372 SHELRTPITSIKGFTETLLEGAMQD-EETCRNFLQIISDESERLYRMIRDILDLSKIEQK 430

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            + L+   + L DL++     +  +     + I + S       + D+  L QI   +L+
Sbjct: 431 RIPLHLGQVHLQDLISSAVAIMHDQAQRKELTITLPSPKPDIWLMTDKDCLQQIILNLLT 490

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           NA+ ++ +G  + +K   D+ +    V + G  IPE     +F RF            G 
Sbjct: 491 NAIAYTQEGGKISIKTEADSENITIQVMDTGIGIPEKELTRIFERFYRVDKARSRDSGGT 550

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    GH+S+ S +   TT    +P 
Sbjct: 551 GLGLAIVKHLVENLHGHISVESKEGRGTTFTVTLPL 586


>gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1397

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 97/538 (18%), Positives = 219/538 (40%), Gaps = 47/538 (8%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
            +  E   A+ +SKE  +         I+ ++   I   D    ++  N    +L+    
Sbjct: 416 TADLEQANAVLISKEEEMR-------SIVEHMVDCIITIDDKSIIRSVNPVIEKLFGYTR 468

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN----------IFSVYKSSETHKDTWH 393
             +   P +  + E  RS ++   +  ++T +            +  V+      +    
Sbjct: 469 EEVIGQPVSILMPEPFRSGHEGYVERYYRTGRGRCEFDHILTLEVEGVHNIGMGREVEGR 528

Query: 394 LPNGQT--LHVIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             NG+   L+V V+    GG      +  ++  +  +E       +     +D+L+  V 
Sbjct: 529 HKNGELIDLYVAVSEYFVGGKRYFTGVLRDIRERKRVEQALRNSEQRFRAIVDNLAALVG 588

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              PDG +   N     +   +   +        ++ T    Y       +   I  +  
Sbjct: 589 EMTPDGVLVEMNRTALEVGGLQSGDVIGKC----LSETEWFSYKPEVQQQIRDDIRRAVA 644

Query: 509 DERKSLQGTLELLSDSV--LEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEA 561
            E       + + +  +  +++ ++P+ + +      + + +NV++ +R  + L +    
Sbjct: 645 GEIVRHDVAIRIANGDLMTIDFMLVPVRDDKGKVIKLIPSGINVSERIRILKDLEQARHE 704

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A+E K+ F+  +S+E+R+P+  +IG  D+L+ +   SL+  Q + V+ I  S+  LL
Sbjct: 705 AEQANEAKSIFLAAMSHEIRTPMNGVIGMADVLQQT---SLSGYQMEMVDLIRESAFALL 761

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++ DILD + ++AG +++  + + +  ++ +    + +      + + +  D  +    
Sbjct: 762 EIIEDILDFSKIEAGRLEIEQAPMSVEKVVEKACAMLESLAARKAVELTLFLDPAIPDEV 821

Query: 681 VADRQRLLQIFSKILSNAMDFS---SKGSTVILKA-----ARDNGDFIFSVKNNGSSIPE 732
           + D  RL Q+   + +NA+ FS    +   V ++A      +D     F + +NG  + E
Sbjct: 822 LGDALRLRQVLVNLANNAIKFSSGLQEPGRVSVRALLVEHDQDTVTVEFEITDNGIGMNE 881

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++   +F  F        RR  G GLGL+I    + L GG + + S+    +    R+
Sbjct: 882 EVQSRLFTSFTQGDTSTTRRYGGTGLGLAITHHLVELMGGSIQVRSAPGEGSVFTVRL 939


>gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 1319

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 168/392 (42%), Gaps = 28/392 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N+ +Q   E K     ++  E ++     +    P G+    N  F  ++     
Sbjct: 452 IQLSQNVELQRKAEKKVLEQSQLNQEILNATPNPMYCLSPHGKYLTVNAKFCEMFGLTMQ 511

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-------V 525
            +        +  T +  +N S G  +F  +       + S    L L   S       V
Sbjct: 512 EI--------VGRTPNEVFNASTG-QVFTTVHQELRQTKGSRNYELSLCDGSSQNREMLV 562

Query: 526 LEYSII--PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            E S        +  +   +++T+  + E  L E  E      + K  F+ ++S+E+R+P
Sbjct: 563 YEASFSNGDGEISGIVGILLDLTERKQFENELREAKELADAMSQAKGDFLANMSHEIRTP 622

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   L   ++   L+  Q +Y+  I+ S+  LL ++NDILD + ++AG + +   
Sbjct: 623 MNAILGMAHLALNTE---LDPSQKKYLTRINESAKNLLGIINDILDFSKIEAGKLTVESI 679

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
              L+++ + +   ++ K HE  +   +  D K+    V D  RL Q+   + SN++ F+
Sbjct: 680 DFSLDEVFDNLVNVVSYKAHEKGVEFLLDIDPKVPIGLVGDPLRLGQVLVNLCSNSVKFT 739

Query: 703 SKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            KG  V+        +      FSVK+ G  I ++  + +F  F        R   G GL
Sbjct: 740 EKGEIVVSALVEQLDENRATIRFSVKDTGIGIAKEKIQHLFRAFSQADSSITRQFGGTGL 799

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI +  + L GG + +SSS+   +  +  I
Sbjct: 800 GLSISKQLVELMGGELVVSSSEGTGSVFSFTI 831



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 16/163 (9%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVF-KVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           LS+    S+  E   K +K     S   + + ++    ++     G  L  N  +    E
Sbjct: 448 LSVSIQLSQNVELQRKAEKKVLEQSQLNQEILNATPNPMYCLSPHGKYLTVNAKF---CE 504

Query: 228 TEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS--------TLEHGNNKSYK 278
             G+  Q+ +G +  ++F     +   +     +    + +        + ++     Y+
Sbjct: 505 MFGLTMQEIVGRTPNEVFNASTGQVFTTVHQELRQTKGSRNYELSLCDGSSQNREMLVYE 564

Query: 279 IVRVLNSF---GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
                      G  GI +D+++     ++L    E+   ++ A
Sbjct: 565 ASFSNGDGEISGIVGILLDLTERKQFENELREAKELADAMSQA 607


>gi|291287080|ref|YP_003503896.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884240|gb|ADD67940.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1322

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 122/683 (17%), Positives = 250/683 (36%), Gaps = 94/683 (13%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKV-LFDSLDFLVWHRDQAG-DILWANISYKKNTETE 229
            G          + ++ S   + F   + +SL    +  D    +I+ AN +  ++  + 
Sbjct: 284 TGELETQVRIREEQERESFERAQFLTDVIESLAHPFYVIDAETYEIILANKAAYRSIGST 343

Query: 230 GIVFQKAIGESRKLFKEEIKK--RMISSSALEKNFCETVSTLEHGNNKSYKIV--RVLNS 285
           G    +    +                         E +   + G  +  ++    V NS
Sbjct: 344 GRTCYELTHHANHPCDGLDHPCPLQTVLKTGAATSVEHIHFDQSGEKRYVEVHGYPVRNS 403

Query: 286 FG----EAGIAIDVSKEITVNDQLTHTYEILHN--------LTVAIAIFDQNR------- 326
            G        ++D++++      L +   IL          L   +    +NR       
Sbjct: 404 EGKVIQMIEYSLDITEKKDAERTLINLNSILEQKVAERTEKLEAEV----KNRKNAEEKL 459

Query: 327 -------------------------YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                                     + + + S  ++      +L   P     LE+L  
Sbjct: 460 IANEKYFRQLIANISDIIIIADETLRITYVSPSIEQICGFPPEYLLGKP-----LEYLVQ 514

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRGGTIWMF--- 416
            +   + + +  W EN+   +      +      +G  L   V+  +      I      
Sbjct: 515 ES---DGVIFDHWIENVLRRHGEQRVAELRILKRSGAYLNAEVLAKNMLENNVINGVVVN 571

Query: 417 -ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRL 474
             ++TV+   E +   L       ++     + +   DG I+  NPAF  +     E  L
Sbjct: 572 IRDVTVRKKAEEELKKL----ALVMEQNPNSIVITDIDGNIEFVNPAFEKITGYSLEEAL 627

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PL 533
               ++     T    + E     +    + + +   K   G L       +E++II P+
Sbjct: 628 GKNPNVLKTDHTEPAVF-EELWKTVTKGEVWNGEFVNKKKNGEL------YIEHAIIAPI 680

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            N +  +           E  L +      +++  K+ F+ ++S+E+R+PL  ++GF +L
Sbjct: 681 MNDRGEIVNYLGMKENITE--LKQARAKAEESNRAKSMFLANMSHEIRTPLNGLMGFLEL 738

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK +    L+S+Q++Y+  I  S+  LL ++NDILDL+ +++G+M +  S + L   +  
Sbjct: 739 LKHT---PLDSEQAEYLSTIKFSADTLLKILNDILDLSKIESGMMDIESSEMNLGFQILS 795

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             ++   K     +R+    D ++  S + D  R+ Q+ S +L+NA+ F+  G  + +  
Sbjct: 796 TVKAFYAKASAKGVRLYSYIDPQVPSSLLGDALRISQVVSNLLNNAVKFTHAGGVIKVNV 855

Query: 713 ARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
              N        + +V++ G  IP+   KSVF  F         +  G GLGL+I  + +
Sbjct: 856 ELKNETKKTATVLIAVEDTGVGIPDGKIKSVFEPFAQVDSSVTRKYGGTGLGLTISRNLL 915

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
            L    + + S     +     +
Sbjct: 916 KLMKSDIELKSEKGKGSKFYFEL 938


>gi|34497076|ref|NP_901291.1| sensor/response regulatory hybrid protein [Chromobacterium violaceum
            ATCC 12472]
 gi|34102933|gb|AAQ59297.1| probable sensor/response regulatory hybrid protein [Chromobacterium
            violaceum ATCC 12472]
          Length = 1748

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 135/796 (16%), Positives = 290/796 (36%), Gaps = 66/796 (8%)

Query: 46   RQRNSLAKKVNETYSFLSEICDQLSK----YHSLLTENNCLTIVWD------GKDETPEI 95
            R +  L          +++   +L +      ++L     +   WD        +     
Sbjct: 468  RIKAELQVLSENLEQRVADRTAELDQAWRTLQTVLDAVPFIIGYWDCDQINRVANHAYRT 527

Query: 96   IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
               +           DLL      +  +   L      L  E Q F+     Q+      
Sbjct: 528  WFGIDPGALPGMRMRDLLG-----EPLYQANLPHIEAVLGGEPQVFERQICGQDGVVRHS 582

Query: 156  EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW--HRDQAG 213
                        +     I  +++E      +L++ +   ++L D+++  +     D  G
Sbjct: 583  LTTYLPDLVNDEVRGFYAIVQDISEQVESRSRLTSALKERELLLDTINQQLLYTATDTDG 642

Query: 214  DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI-----SSSALEKNFCETV-S 267
             IL AN  +    +  G   ++ +G   +     +   M       + A  + +   V +
Sbjct: 643  RILEANDLF---CQVHGYERKELLGWDHRKLSAGVHPAMFWQSLWRTIASGRVWRGEVCN 699

Query: 268  TLEHGNNKSYKIVRVLNSFGE------AGIAIDVSKEITVNDQLTHTYEILHNL-----T 316
                G  + +  V V ++           + ID+++    + +L   + +L N+      
Sbjct: 700  QTREGRQRWFDTVIVPHAGDSGRIERYIALRIDITERKLADAELARVHGMLSNVLRAASE 759

Query: 317  VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP--SNDELLEFLRSANKLPEQLNWKTW 374
            VAI   D +  +   N     +       +      ++  L E LR   +   Q  ++  
Sbjct: 760  VAIIAADVHGVVSLFNSGAQRMLGYSENEMVGRAMLTHFHLPEELREHGEALSQR-YERQ 818

Query: 375  KENIFSVYKS-----SETHKDTWHLPNGQTLHV--IVTSNPR-----GGTIWMFENLTVQ 422
             E + ++ +      +ET + T+   +G  L V  +VT+         G + +  ++T+ 
Sbjct: 819  VEGLRALVQEPEASGAETREWTYVRKDGSQLQVSLMVTAMRDADELVVGYLAIAADITIP 878

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               + +            +    GV  + P       N     +++        G   R+
Sbjct: 879  QRQQRELVAARDQLQLAAEVAQLGVWSWSPADNQLRWNAQMFEIYRQPPELAERGLEYRH 938

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT- 541
                      +S   DL  A++   +   +  +  L       ++       +   +   
Sbjct: 939  WRERVHPDDVDSVEADL-RALLERGEAMDRVFRVRLPDGEMRYVQVGARLERHGDGVRVT 997

Query: 542  --FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                ++T++   E+ L E      +A  +K+ F+ ++S+E+R+P+  ++G   L++ ++ 
Sbjct: 998  GINRDITETRAYEQNLLEAKRQAEEASMVKSQFLANMSHEIRTPMNAVLGLLQLMQHTR- 1056

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              L+ +Q  YV  I A++  LL L+NDILD + +DAG ++L+     L  L+ E+   ++
Sbjct: 1057 --LDERQLDYVGKIQAAAKSLLGLLNDILDFSKIDAGKLQLDLHPFDLEGLMRELAVVLS 1114

Query: 660  TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD 715
               ++ ++ +    +  L +  + D+ RL QI   +  NA+ F+++G     V  +A R+
Sbjct: 1115 GNTNDKDVEVLFRMEPTLPAMLIGDKLRLQQILINLAGNALKFTTQGQVVLAVRERARRE 1174

Query: 716  NG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
               +    V + G  I  +    +F  F        RR  G GLGL I    + L GG +
Sbjct: 1175 GEVELRIEVSDTGIGIAPEQLSRIFEGFTQAEASTTRRFGGTGLGLVISRRLVELMGGQL 1234

Query: 773  SISSSDEGVTTINCRI 788
             + S     +     +
Sbjct: 1235 RVESQLGCGSRFWFDL 1250



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 80/601 (13%), Positives = 181/601 (30%), Gaps = 75/601 (12%)

Query: 19  LFSCKIAVFGTIAGMLLTTIIPIIL-LIRQRNS----LAKKVNETYSFLSE--ICDQLSK 71
           L S  +     +A  +L+ ++ +++   RQR         ++        +  I   L  
Sbjct: 312 LPSAALVASSGLAASVLSALLALVVGRNRQRRRELLAAQSRLAAIVEGSVDAIISKTLDG 371

Query: 72  YHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKAT 131
             +    +      +   +   + + +L    D    + D+L      +     ++    
Sbjct: 372 VVTSWNLSAERLFGYRADEAVGQPLAKLIVPEDRRGEEVDILR-----RIARGERIEHF- 425

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL-------- 183
           E +R       L+        +   GRV G+   LR   L       AE  +        
Sbjct: 426 ETVRMRKDGSLLIVSVSISPVLDEAGRVVGASKVLR--DLSEQKRIKAELQVLSENLEQR 483

Query: 184 ---KCKKLSNHISVFKVLFDSLDFLV--WHRDQAGDILWANISYKK--NTETEGIVFQKA 236
              +  +L       + + D++ F++  W  DQ   +  AN +Y+     +   +   + 
Sbjct: 484 VADRTAELDQAWRTLQTVLDAVPFIIGYWDCDQINRV--ANHAYRTWFGIDPGALPGMRM 541

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK---SYKIVRVLNSF--GEAGI 291
                +   +     + +    E    E     + G  +   +  +  ++N    G   I
Sbjct: 542 RDLLGEPLYQANLPHIEAVLGGEPQVFERQICGQDGVVRHSLTTYLPDLVNDEVRGFYAI 601

Query: 292 AIDVSKEITVNDQLTHTYE----ILHNLTVAIA--IFDQNRYLQFHNRSFVELWEIDLAF 345
             D+S+++    +LT   +    +L  +   +     D +  +   N  F ++   +   
Sbjct: 602 VQDISEQVESRSRLTSALKERELLLDTINQQLLYTATDTDGRILEANDLFCQVHGYERKE 661

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L     + +L     SA   P       W+          E    T     G+       
Sbjct: 662 LL-GWDHRKL-----SAGVHPAMFWQSLWRTIASGRVWRGEVCNQTRE---GRQRWFDTV 712

Query: 406 SNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIK 457
             P  G        I +  ++T +   + +   +  +    +   SE  +      G + 
Sbjct: 713 IVPHAGDSGRIERYIALRIDITERKLADAELARVHGMLSNVLRAASEVAIIAADVHGVVS 772

Query: 458 LSNPAFRSLWKTEEN---------RLSPGTHIRNIAATCSRYYNES-DGWDLFAAIITSF 507
           L N   + +    EN                +R      S+ Y    +G         + 
Sbjct: 773 LFNSGAQRMLGYSENEMVGRAMLTHFHLPEELREHGEALSQRYERQVEGLRALVQEPEAS 832

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEAL 562
             E +      +  S   +   +  + +A  ++        ++T   R +R L    + L
Sbjct: 833 GAETREWTYVRKDGSQLQVSLMVTAMRDADELVVGYLAIAADITIPQRQQRELVAARDQL 892

Query: 563 R 563
           +
Sbjct: 893 Q 893


>gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase /
           response regulator hybrid [Rhodopirellula baltica SH 1]
 gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine
           kinase / response regulator hybrid [Rhodopirellula
           baltica SH 1]
          Length = 871

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 107/500 (21%), Positives = 191/500 (38%), Gaps = 47/500 (9%)

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
            +    F N S+++   +    LA     D     +    +  +Q   +T  E++ SV  
Sbjct: 57  ADGRRVFANDSYLKWRGVTWQELAGKHDEDLFPPEIARKYREDDQKVMQTG-ESLHSVES 115

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIW----MFENLTVQVDLETKYNTLVKVQGET 439
           +            G    V    +   G +     +F ++T +V+ E        +    
Sbjct: 116 AKLADDSI-----GWIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTL 170

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           + ++ + +     D R    + A    +         G    +I    +  + E    D 
Sbjct: 171 LANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADI---FTPEHAEGARLDE 227

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERA 554
              I T      +  + T     D+    + +PL N       T     ++TD  R+E A
Sbjct: 228 LRVIETGEALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAA 287

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E       A+  K+ F+ ++S+E+R+P+  +IG  DLL  +K   L+  Q  YV+ I 
Sbjct: 288 LHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTK---LDPDQQDYVQIIQ 344

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL L+NDILD + ++A  ++L      L   +    +S + K  E  + ++    
Sbjct: 345 ESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDIS 404

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------------------- 712
            +L    + D  R+ Q+ + ++ NA+ F+  G   +                        
Sbjct: 405 PELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERADRDLAATHSGRES 464

Query: 713 -ARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
             RD+  +   SV ++G  IP     +V N F        RR  G GLGLSI    + L 
Sbjct: 465 PERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTGLGLSISRQLVELM 524

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + + S     TT + ++
Sbjct: 525 GGELHLQSEVGVGTTFSFQL 544



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 29/253 (11%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETV 266
            +   G  ++AN SY K     G+ +Q+  G     LF  EI ++            E++
Sbjct: 54  IKAADGRRVFANDSYLK---WRGVTWQELAGKHDEDLFPPEIARKYREDDQKVMQTGESL 110

Query: 267 STLEH---GNNKSYKIVRVLNSF--------GEAGIAIDVS----KEITVNDQLTHTYEI 311
            ++E     ++    I RV  +         G   +  DV+    +E     + +    +
Sbjct: 111 HSVESAKLADDSIGWIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTL 170

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           L N+  +I   D +      + +    +    +  +      D          +L E   
Sbjct: 171 LANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRV 230

Query: 371 WKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF---ENLTVQVDLE 426
            +T +  +  V + +    +DTW +     L      N  G  I  F    ++T     E
Sbjct: 231 IETGEALVDRVERETWPDREDTWCMTTKMPLR-----NDTGEIIGTFGISRDITDLKRSE 285

Query: 427 TKYNTLVKVQGET 439
              +  V++    
Sbjct: 286 AALHEAVRMADAA 298


>gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
 gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
          Length = 732

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 90/390 (23%), Positives = 167/390 (42%), Gaps = 11/390 (2%)

Query: 410 GGTIWM-FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           GG ++  F     +     +   L  +  + I  + +G  ++    R+ + N AFR+ + 
Sbjct: 28  GGMLYRRFHAARERRSALYELERLRIMFEDAIAAIDDGFVLYDEADRMYICNDAFRNQFG 87

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLELLSDSV 525
           + ++ LS G          +R              +    ++R S   L    +      
Sbjct: 88  SSQSILSEGLTYEEQIEKLARSGIVPGIEGKEEDFVRGLMEKRHSEFGLTKVFQTHDGRW 147

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +            +    ++T+    E  L E  +    A E K +F+ ++S+E+R+P+ 
Sbjct: 148 IRQRDKKTSAGNVVGLRTDITELKERELELEEARQQAEAAAEAKTAFLANMSHEIRTPMN 207

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG  +LL+ +    LN +Q    + +  SS  LL+LVND+LD +  DAG M +N +  
Sbjct: 208 GVIGMAELLEET---DLNEEQRMCTKTVVESSNALLSLVNDVLDFSKADAGKMTVNKAPF 264

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L + L      +A    E +I I + I D +    + D+ RL Q+   ++ NA+ F+  
Sbjct: 265 DLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGRLRQVLINLVGNAIKFTET 324

Query: 705 GST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
           G   + L+   ++    F V++ G  IP     ++F+ F        RR  G GLGL+I 
Sbjct: 325 GFVLIKLEVNTESDLMRFLVQDTGIGIPASKVDTIFDVFEQVNSETTRRYDGAGLGLAIS 384

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  I L GG + ++S     +     +P +
Sbjct: 385 KKLIELMGGTLGVTSKLGEGSEFTFALPLE 414



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/126 (10%), Positives = 42/126 (33%), Gaps = 1/126 (0%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S    +        + +  +     ++D+   +   N +F   +    + L+   + +E 
Sbjct: 43  SALYELERLRIMFEDAIAAIDDGFVLYDEADRMYICNDAFRNQFGSSQSILSEGLTYEEQ 102

Query: 356 LEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           +E L  +  +P  +   + +   +     S       +   +G+ +         G  + 
Sbjct: 103 IEKLARSGIVPGIEGKEEDFVRGLMEKRHSEFGLTKVFQTHDGRWIRQRDKKTSAGNVVG 162

Query: 415 MFENLT 420
           +  ++T
Sbjct: 163 LRTDIT 168


>gi|302392020|ref|YP_003827840.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204097|gb|ADL12775.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 723

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 105/627 (16%), Positives = 225/627 (35%), Gaps = 39/627 (6%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
               +  +L+        +  +        +  G+I+ AN SY++          +   +
Sbjct: 82  RLKEQSLELTMEKDKLNKILYTTMDGFLILNTEGEIIEANKSYQEMIGYSREELLEMTID 141

Query: 240 SRKLFK--EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE----AGIAI 293
              + K  EE+K  M      E++  ET  + ++G     ++        E         
Sbjct: 142 DIDITKNKEEVKDHMERIMTDEQDRFETKCSCKNGEVIDVEVSTTYIDDLEEPIFVSFDR 201

Query: 294 DVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+++    E T+ +        + N    + + +        N +  EL       L  N
Sbjct: 202 DITERKKTEQTLKESEAKFRSYIDNAPYGVFVINSRGEYIEVNEAACELSGYSKEELL-N 260

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTS-- 406
            S +++             ++ +  K ++  + +  E   +   L  +G   H  + +  
Sbjct: 261 MSIEDV------------TVDRQKAKRHLVQLLEVGELSLEIMLLKKDGSKFHANINAVK 308

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 +   E++T + + E K         +  D     V      G+++L N     +
Sbjct: 309 ASENRLLGFVEDITARKEAEEKVKEERDKLQKYFDITEVIVVNLDRTGKVELLNRKGCEI 368

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
              +E  +       N          +     L    I +  +   +  G      +  +
Sbjct: 369 LGVKEEEVLGHDWTENFVKEEDSAETKQIINSLLEGEIINDKNRIITKSGE-----ERKI 423

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            +    L + Q+ +  +  T     E       +     +++K  F  ++S+E R+PL  
Sbjct: 424 LWHNAVLKDEQSQMNKILSTGIDITEVE---SLKEKVAYNKLKMEFFANISHEFRTPLNL 480

Query: 587 IIG---FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           I       ++ +       +SK  +Y   I  +   LL L N+++D+  +D+G  +L   
Sbjct: 481 IFSAQQMLEMYQKKLEPEQSSKMGKYTTIIKQNGRRLLRLANNLIDITKMDSGSFELELE 540

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  L+ +V  S+A  +    +  +  S+ +      D   + ++   +LSNA+ F+ 
Sbjct: 541 NCNIVSLVRKVACSVAEHIEYKELEFEFDSEIEEKIIACDPFNIERVILNLLSNAVKFTD 600

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
            G  V +    + G  + SVK+ G  I ++  + +F RF            G G+GLSIV
Sbjct: 601 IGDKVSVNIYTEEGKVLISVKDTGIGISQEKQELIFKRFGQADKSFTRSNEGTGIGLSIV 660

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +S + LH G +S+ S +   +     +
Sbjct: 661 KSIVELHNGQISVESEEGVGSEFIIEL 687



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 96/277 (34%), Gaps = 14/277 (5%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ E     + L    + F+   D+  + V+  +  G+ +  N +  + +         
Sbjct: 201 RDITERKKTEQTLKESEAKFRSYIDNAPYGVFVINSRGEYIEVNEAACELSGYSKEELLN 260

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-AGIAID 294
              E   + +++ K+ ++    + +   E +   + G+     I  V  S     G   D
Sbjct: 261 MSIEDVTVDRQKAKRHLVQLLEVGELSLEIMLLKKDGSKFHANINAVKASENRLLGFVED 320

Query: 295 VSKEITVNDQLTHTYEILH---NLTVAIAI-FDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           ++      +++    + L    ++T  I +  D+   ++  NR   E+  +    +  + 
Sbjct: 321 ITARKEAEEKVKEERDKLQKYFDITEVIVVNLDRTGKVELLNRKGCEILGVKEEEVLGHD 380

Query: 351 SNDELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
             +  +   +   +   +   L  +   +    + KS E  K  WH        +    +
Sbjct: 381 WTENFVKEEDSAETKQIINSLLEGEIINDKNRIITKSGEERKILWHNAV-----LKDEQS 435

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                +    ++T    L+ K     K++ E   ++S
Sbjct: 436 QMNKILSTGIDITEVESLKEKV-AYNKLKMEFFANIS 471


>gi|117926280|ref|YP_866897.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610036|gb|ABK45491.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 968

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 107/528 (20%), Positives = 207/528 (39%), Gaps = 42/528 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + +  T    IL +L+V +   D    +QF N +   +    +  +         L +
Sbjct: 299 EALRESKTLLVSILQSLSVGVFGLDLTGKIQFINPAAANMLGGVIESMLGQSGLS--LWY 356

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
                K P  +   T   +     +    H     L  G T+  I+      G +  F +
Sbjct: 357 HDGTGKNPNPIGV-TLTNHQPQQGEGRFVHMRGHTLQVGYTVMPILEQGQVTGVVVTFND 415

Query: 419 LTVQVDLETKYNTLVK---------VQGETIDHLSEGV---AVF------GPDGRIKLSN 460
           +T     E    T+++          Q E + ++SE +    VF       P  RI+ ++
Sbjct: 416 ITANRRTERLTRTIIQGTSKVTGEAFQRELVRNISESLEMRFVFVGRFHEDPMPRIETTS 475

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                      N L   T    +    +  Y E          + + + + +S  GT   
Sbjct: 476 VWANGRQGAPFNYLLADTPCAEVIGKETSVYAEHVQTHFPNDPLLA-ELKVESYMGTPLF 534

Query: 521 LSDS-----VLEYSIIPLPNAQTMLTF--------VNVTDSVRAERALTEKNEALRKADE 567
            SD      ++   + PL + +   +             +    E AL    E    A +
Sbjct: 535 RSDGKPLGILVVMDVQPLTDIELARSILGIFSGRAAMELEREETELALRVAKERAEAASQ 594

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+E+R+P+  I+G T+LL+         +Q +++   + +   LL L+NDI
Sbjct: 595 AKSEFLAMMSHEIRTPMNAILGITELLQEQ---PSKKEQLEFLTVQAKAGQALLTLINDI 651

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
           L+L+ ++AG  +L  +   L +LL  V   +        + + + I++G   +++ D +R
Sbjct: 652 LELSRLEAGREQLQTAPFDLYELLRSVSTLLEPSAKHKGLSVHLEIAEGLSPNWIGDERR 711

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   ++ N + F+++GS + + A          VK++G+ I       +F RF    
Sbjct: 712 LRQVLINLVGNGIKFTNRGS-IWISAQPMANGLEIRVKDSGAGINPRHHDKIFERFHQVD 770

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               R   G GLGL+I +  ++L GG + + S  +  +     +P  E
Sbjct: 771 STATRKHGGTGLGLAITKKLMDLMGGEIRMESQPDQGSCFTLALPLSE 818



 Score = 41.1 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 22/174 (12%)

Query: 419 LTVQVDLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           +T Q  L  + +   +   E        +  LS GV      G+I+  NPA  ++     
Sbjct: 284 ITTQRRLNDQLHQNKEALRESKTLLVSILQSLSVGVFGLDLTGKIQFINPAAANMLGGVI 343

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YS 529
             +   +         S +Y++  G +     +T  + + +  +G    +    L+  Y+
Sbjct: 344 ESMLGQS-------GLSLWYHDGTGKNPNPIGVTLTNHQPQQGEGRFVHMRGHTLQVGYT 396

Query: 530 IIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKA--DEIKNSFVQHVS 577
           ++P+         ++TF ++T + R ER      +   K   +  +   V+++S
Sbjct: 397 VMPILEQGQVTGVVVTFNDITANRRTERLTRTIIQGTSKVTGEAFQRELVRNIS 450


>gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
 gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
          Length = 580

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 156/367 (42%), Gaps = 21/367 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++ +            I+++  G+ +    G I L N  FR  +K +++           
Sbjct: 230 EMTSAGEMQRDRLQTVIENIGAGIILIDKMGYIHLVNRTFRKQFKVQKHIYMH------- 282

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                + Y+E+   +    +I         ++  L L  D  +E     +     + T  
Sbjct: 283 -----KLYHEAFTHEEIIELIDEIFMTETKVRKFLRLAVD--IERRYFQVDGVPILSTDD 335

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                V     +TE      + ++++  FV +VS+EL++P+T+I GF++ L    +    
Sbjct: 336 EWKGIVLVFHDVTETK----QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAIDD-K 390

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              ++++  I   S  L  L+ D+LDL+ ++    KLN       +++ E++  +  K  
Sbjct: 391 EALTEFLSIILKESVRLETLIQDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKAT 450

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I++ V    +    +AD  RL QIF  +++NA+ ++ +G +V + A    G + F V
Sbjct: 451 EKGIQLHVRVPKEPVYVMADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDV 510

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  + +     +F RF            G GLGL+IV+  +  H G +S+ S     
Sbjct: 511 ADTGIGMKKSEIPRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKG 570

Query: 782 TTINCRI 788
           TT    +
Sbjct: 571 TTFTVSL 577


>gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 929

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 140/680 (20%), Positives = 242/680 (35%), Gaps = 70/680 (10%)

Query: 170 SLDGIYSELAETTLKCK----KLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKK 224
           S +   +ELA      +          S+F   FD+    +       G +L  N ++++
Sbjct: 22  SPNAASTELARVQEALRVSEASRRESESLFAKTFDANPAFMTIGHVADGRLLEVNPAFER 81

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKK-------RMISSSALEKNFCETVSTLEHGNNKSY 277
            +   G   ++ +G S       ++        R + ++   ++F               
Sbjct: 82  ES---GYRREEVLGRSTLELNLWVRPEERDEFLRQMRATGSVRDFEANFRAKSGEIRTLL 138

Query: 278 KIVRVLNSFGEAGI---AIDVSKEITVNDQLTHTYEI-------------LHNLTVAIAI 321
               +L   G A +    ID+++          TY I                + + IA 
Sbjct: 139 LNADILAGEGPACMLTVGIDITERRRREQVQNATYRISQAALADNDLAAFFAEIHLIIAG 198

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATN--------PSNDELLEFLRSANKLPEQLNWKT 373
               R L     S          F+           P N      L +A  L    +  T
Sbjct: 199 LMPARNLYVALLSLDRSLLSFPYFVDERSTAPAPRKPGNGLTEYVLDTAKPLLTTADELT 258

Query: 374 WKENIFSVYKSSETHKDTWH----LPNGQTLHVIV---TSNP-----RGGTIWMF----- 416
                   Y++       W     L  G+ + VI     SNP         +  F     
Sbjct: 259 VLLRERGRYQAMGAPAALWLGAPLLVEGRAIGVIAVQDYSNPKAYGEEEQRLLTFVAEQA 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  +  +        +      ++  EG+    P GR   +N A   +   E    S 
Sbjct: 319 ATVVHRRQIHAAIRQAEEQYRGIFENALEGLYQSSPSGRFLRANSALARMCGYE----SS 374

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAI------ITSFDDERKSLQGTLELLSDSVLEYSI 530
              +  I     + Y +    + F  +      +T F+ E     G+   +S+SV     
Sbjct: 375 EQLLHAINDIGHQIYVDEHRREQFLELAKVHDQVTDFESEIFRRDGSRIWISESVRVVRN 434

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                A+     +++T    A RAL    EA   A   K+ F+  VS+ELR+PL  I+G+
Sbjct: 435 SAGELARFEGVAIDITQQREAARALQAAKEAADAASGAKSQFLASVSHELRTPLNGILGY 494

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T +L+   L  L  KQ + +  I  S+  LL L+ND+LDL+ ++AG ++L+     L + 
Sbjct: 495 TQILRRDPL--LGEKQREGIRVIHESAEHLLVLINDVLDLSKIEAGRIELHPGDFALAEF 552

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
               ++  A +  E N+ ++      L  FV  D  RL Q+   +L NA+ F+++G  V 
Sbjct: 553 AAGAERVFAPRAREKNLLLETALAPDLPEFVRGDEARLRQVVFNLLGNAVKFTAQGGVVF 612

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768
             ++   G   FSV + G  I       +F  F       G   G GLGL+I  S +   
Sbjct: 613 SISSSAGGGLRFSVSDTGRGIAAADLSRIFEPFTQVGESTGAATGTGLGLAISRSLVERM 672

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + + S     +     +
Sbjct: 673 GGRLQVESKPGWGSRFWFDL 692



 Score = 38.0 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 27/200 (13%)

Query: 134 LRKEG--QSFDLVAETQNDCAIKIEGRVSGSCAF-------------LRILSLDGIYSE- 177
           LR+ G  Q+    A       + +EGR  G  A               R+L+     +  
Sbjct: 261 LRERGRYQAMGAPAALWLGAPLLVEGRAIGVIAVQDYSNPKAYGEEEQRLLTFVAEQAAT 320

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV--FQK 235
           +         +      ++ +F++    ++    +G  L AN +  +    E        
Sbjct: 321 VVHRRQIHAAIRQAEEQYRGIFENALEGLYQSSPSGRFLRANSALARMCGYESSEQLLHA 380

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFC---ETVSTLEHGNNKSY--KIVRVLNSFGEA- 289
                 +++ +E ++      A   +     E+      G+       +  V NS GE  
Sbjct: 381 INDIGHQIYVDEHRREQFLELAKVHDQVTDFESEIFRRDGSRIWISESVRVVRNSAGELA 440

Query: 290 ---GIAIDVSKEITVNDQLT 306
              G+AID++++      L 
Sbjct: 441 RFEGVAIDITQQREAARALQ 460


>gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
 gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
          Length = 756

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 114/540 (21%), Positives = 212/540 (39%), Gaps = 53/540 (9%)

Query: 295 VSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            S+    ++    T   +          +  +D +R   F + S  EL       L   P
Sbjct: 214 ASRAEQADENYAATRARIDTALTHGRCGLFDWDLSRGRMFWSSSLYEL-------LGREP 266

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---- 406
            +D L     S    P+ ++     E++    ++           +G  + +        
Sbjct: 267 KDDILSFSEVSDLTHPDDIDLLGLAEHLLESGETLVDETFRMRHADGSWIWLRARGEIQV 326

Query: 407 ---NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                    I +  ++T Q  L  +         + I+ +SE   ++     + + N  +
Sbjct: 327 DPGRAEPHLIGICLDITEQHLLAEQSQMADLRLRDAIETISEAFVLWNTRNELVICNSNY 386

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL-------FAAIITSFDD------- 509
           +SL     + + PGT  +++ A             L         +     +D       
Sbjct: 387 QSLHNLPPSAVKPGTPYKDVLAAAENGPASPQPVQLSKRQGGPEGSYEAQLEDGRWLQIS 446

Query: 510 ERKSLQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           ER++  G    +                S+  L+ ++  L  ++ +L       S  AE+
Sbjct: 447 ERRTKDGGFVSVGTDITALKKHEERLTESEKRLKATVTDLQRSRKILEVQTRQLSEMAEK 506

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
              E+      A++ K+ F+ ++S+ELR+PL  IIGF+D++     G L   + + Y + 
Sbjct: 507 Y-QEEKTRAEAANQAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPLGTDRYADYCKD 565

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S T LLN++NDILD++ ++AG M +    +  ++   +  + I     E NI I   
Sbjct: 566 IYSSGTYLLNVINDILDMSKIEAGRMSIETEVVNASEAAEDAARIITGAASEKNIVISAD 625

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L     D++ L Q+   +L+NA+ F+    TV LKA        F V + G  I E
Sbjct: 626 VADNL-HVDVDKRALKQVLLNLLANAVKFTPDHGTVTLKARPRGDKVRFEVTDTGIGISE 684

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              + +   FV   +      +G GLGL+I  S + LHGG ++I S  +  T ++  +P 
Sbjct: 685 RDIERLAKPFVQVENQFTKTHQGSGLGLAIARSLVELHGGKLAIESEVKKGTVVSFSLPL 744


>gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1261

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/509 (19%), Positives = 193/509 (37%), Gaps = 30/509 (5%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-AFLATN 349
           I+I   ++  +    +   +I+      I + D    +   N S  +L+       +  +
Sbjct: 255 ISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIEKLFGYSQTELIGQS 314

Query: 350 PSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            +   L E L+ +  L  E  +           ++   T  D    P    + V +TS P
Sbjct: 315 IALLGLAELLQQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEFP----IEVSLTSLP 370

Query: 409 -----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                         +++ + + + +     +     +D    GVA+   +G  + +NP  
Sbjct: 371 SLSQREMNIFASVRDISARQEAQQQILRQREHLQSVLDSAPVGVAIT-VNGITQFANPHI 429

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L   +        ++        +   E   +    + +    + R  ++  L     
Sbjct: 430 GELVDLKVGDSPQKIYVD--LGDRQQMLEELTQFGRSQSRVYKMYNPRGEIRDILATFLA 487

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +  E           +    ++T    AE  +    E   +A  IK  F+ ++S+E+R+P
Sbjct: 488 TDYE------GQKGILGWLADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTP 541

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  +IG T L   +    L  +Q +Y+  I  S   LL ++NDILD + ++AG + +   
Sbjct: 542 MNAVIGMTHLALKT---DLTPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESI 598

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
              L+ +L+ V   I+ K     + +    D  L   F+ D  RL QI     +NA+ F+
Sbjct: 599 DFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFT 658

Query: 703 SKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            +G  T++++             +VK+ G  I  +   ++FN F        R   G GL
Sbjct: 659 EQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGL 718

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTIN 785
           GL+I +    L GG V + S     +T  
Sbjct: 719 GLAICKRIAELMGGEVGVESEYGQGSTFW 747



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 89/287 (31%), Gaps = 35/287 (12%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E++    + K L    S ++ + +     +   D  G+I+ AN S +K     G   
Sbjct: 251 VLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIEKLF---GYSQ 307

Query: 234 QKAIGESRKLFK-----------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
            + IG+S  L              +  + +  +  L++   E + T   G+    ++   
Sbjct: 308 TELIGQSIALLGLAELLQQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEFPIEVSLT 367

Query: 283 LNSFGEA------GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
                            D+S       Q+    E    +L +  V +AI   N   QF N
Sbjct: 368 SLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQSVLDSAPVGVAIT-VNGITQFAN 426

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
               EL ++ +            ++       L E   +   +  ++ +Y      +D  
Sbjct: 427 PHIGELVDLKVGDSPQKI----YVDLGDRQQMLEELTQFGRSQSRVYKMYNPRGEIRDIL 482

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                           + G +    ++T     E +     ++  E 
Sbjct: 483 ATFLATDYE------GQKGILGWLADITPIKAAEAEMKRAKELAEEA 523



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 5/160 (3%)

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            G  +++   +++Q   +           + I++  EG+ V    G I L+N +   L+ 
Sbjct: 245 GGVMLFVLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIEKLFG 304

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             +  L   +      A   +                  D E   + GT    S+  +E 
Sbjct: 305 YSQTELIGQSIALLGLAELLQQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEFPIEV 364

Query: 529 SIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALR 563
           S+  LP+             +++    A++ +  + E L+
Sbjct: 365 SLTSLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQ 404


>gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 606

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 157/393 (39%), Gaps = 36/393 (9%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G        +   + ++ ++    +      ++++  GV +    G I L N +   +  
Sbjct: 234 GELARTINRMAENLQIQMQHIRENEYRLQGVLENMVSGVMMVDQRGTITLVNRSAEDILG 293

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              + L   +++            + +   L A  I +    R+ L   L    + +LE 
Sbjct: 294 YSSHELLNKSYLDA--------GFQLEFTALLADAIETHTRVREEL--MLHFPQEQILEV 343

Query: 529 SIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            + P+   + Q     V + D     R            + I++ FV +VS+EL++P+  
Sbjct: 344 HVSPIVQGDGQRKGVLVVLHDITAVRRL-----------ERIRSEFVANVSHELKTPVAA 392

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           + GF + L    L         +++ I   S  L  L+ DIL+L+ +++  + L +S + 
Sbjct: 393 VKGFAETLMAGALED-KEMARSFLQIIYDESDRLNRLIGDILELSKIESKRIPLQFSPVD 451

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  ++    Q +  +  + +I ++   + +L    AD  RL QI   +LSN + ++ +G 
Sbjct: 452 VESIVENSIQMMKAEAEKKHITLESCVENEL-YIEADEDRLRQILINLLSNGISYTPEGG 510

Query: 707 TVILKAA--------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
            V +            DN      + + G  IPE     +F RF            G GL
Sbjct: 511 RVSIGVEFVPSLDDNPDNERMRIRISDTGIGIPEKDLPRIFERFYRVDKARSRSSGGTGL 570

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSIV+    LH G +S+ S     TT N  +P
Sbjct: 571 GLSIVKHLTELHHGTISVESEAGKGTTFNIELP 603



 Score = 44.9 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 26/190 (13%)

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQLTHTY 309
           R+             V+        + ++    N      +A  +++    +  Q+ H  
Sbjct: 197 RIARGITRPIERITRVARQMANQQYAARVPEAGNDE-VGELARTINRMAENLQIQMQHIR 255

Query: 310 E-------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           E       +L N+   + + DQ   +   NRS  ++       L      D         
Sbjct: 256 ENEYRLQGVLENMVSGVMMVDQRGTITLVNRSAEDILGYSSHELLNKSYLDAGF------ 309

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFE 417
                QL +     +    +      +   H P  Q L V V+   +G     G + +  
Sbjct: 310 -----QLEFTALLADAIETHTRVR-EELMLHFPQEQILEVHVSPIVQGDGQRKGVLVVLH 363

Query: 418 NLTVQVDLET 427
           ++T    LE 
Sbjct: 364 DITAVRRLER 373


>gi|60681532|ref|YP_211676.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60492966|emb|CAH07744.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 899

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/515 (20%), Positives = 220/515 (42%), Gaps = 34/515 (6%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N   ++    ++  L F NR F          L   
Sbjct: 234 GYIQNITDIQRKRNDINTLTHAINNAKESVYAARRDGTLIFANRQFR---------LNHR 284

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----------NGQT 399
            +    L  +R  + + +    + W+E   S+ +  +T     + P           G  
Sbjct: 285 IAEQADLSLIRVFDVVGDMTCIEDWEERYRSI-REGQTLNFLAYQPLKHDKNTLAFEGTM 343

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--PDGRI 456
             V  T++    T W F  +++ ++  E++     ++   T++++  G+ V     D R 
Sbjct: 344 YSV--TTDDGEETFWSFTHDISERIRYESQIKRFNRIMDTTMENIPAGIVVKDIENDFRY 401

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N    +   + EN +             ++   + D           +  E K   G
Sbjct: 402 IYRNRESYNRDISSENAIGM-NDFDYYPPEMAQQKRKEDMEIAATGKGMHWIMEGKDKNG 460

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            L +L    +        +   +    ++T      R L E  E    +D++K++F+ ++
Sbjct: 461 NLLILDKQKIMVESEDF-SPIIVSIEWDITQLELMRRELIESKEKAETSDKLKSAFLANM 519

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+ ++  S       ++ +Y E + A++  LL L+N+ILDL+ +++G
Sbjct: 520 SHEIRTPLNAIVGFSRIISESDNA---EERREYYEIVDANNERLLQLINEILDLSKIESG 576

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           I++  Y  + L+ L  E+  +   +  +  + ++  S  +  S  +D+ R+ Q+FS ++ 
Sbjct: 577 IVEFTYGPVRLHPLCKEIHDAHVFRCPQ-GVELRFDSPDEALSIHSDKNRIFQVFSNLIG 635

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA  F+++GS V     ++    +F VK+ G  I  +    VF RF    +  Q  G GL
Sbjct: 636 NAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLNNFAQ--GTGL 692

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI ++ I   GG +++SS     TT    +P +
Sbjct: 693 GLSICKTIIERLGGEIAVSSEVGTGTTFTFWLPLE 727


>gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891]
 gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891]
          Length = 1319

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 161/385 (41%), Gaps = 13/385 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N+ +Q   E K     ++  E ++     +      G     N  F  L      
Sbjct: 450 IQLSQNIELQRKAEQKVLEQSQLNQEILNATPNPMYCLSSQGNYLTINAKFCELCGLPMQ 509

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +  G   +++ +        S+          S + E   L   L+     V E S   
Sbjct: 510 EI-IGKTPQDVFSQQDASQCFSEAHQQLTLKQGSKNYELSVLDQHLQTRDMLVCEASFSN 568

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                +  +   +++T+    E  L +  E        K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 SHGKVSGIVGILLDLTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   ++   L+  Q +Y+  I+ S+  LL ++NDILD + ++ G + +      L+++
Sbjct: 629 VHLALNTE---LDPAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + +   I+ K  E  I   +  + ++ +  + D  R+ Q+   +  NA+ F+ +G  V+
Sbjct: 686 FDNLTNVISLKAQEKKIEFLLDIEPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVV 745

Query: 710 -LKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
            ++       +    FSVK+ G  I ++    +F+ F        R   G GLGLSI + 
Sbjct: 746 AVRIEMLTERDVVLHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            + L GG +S+SS+    +T    I
Sbjct: 806 LVELMGGQLSVSSTLGAGSTFAFTI 830


>gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 725

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 175/387 (45%), Gaps = 11/387 (2%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GG   M ++L      E  +    K     ++ L E +     + +I  +N      +  
Sbjct: 340 GGINSMLQDL-ELSQKEVMHRESEK--HALLNSLIEVLIYLDSELKIAWTNNKVSEYFGE 396

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD---DERKSLQGTLELLSDSVL 526
           +   ++  TH   +    +          L      SF+    ++ S  G  E+ S ++ 
Sbjct: 397 KTEAITGRTH-HELWGDKNPILAPFVRKALNNGKTQSFEINVSDKDSWTG--EIWSVTIG 453

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                      T+ + +++T+  ++E  + +       ++  K+ F+ ++S+ELR+PL  
Sbjct: 454 SVRDRDGKLIGTIESILDITEVKKSEEKMLQAKILAENSNRSKSEFLSNMSHELRTPLNA 513

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +IGF D+L     G LN KQ ++V  IS S   LL L+N+ILDL+ ++AG M+   +   
Sbjct: 514 VIGFADILNEEGFGPLNKKQKRFVGNISTSGKHLLKLINEILDLSKIEAGKMEFKCTEFS 573

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + +  +E+K  +     +  IRI+      + +  +D  + +Q+   ++SNA+ F+ +G 
Sbjct: 574 VKEKFDEIKDILFPVFSKKKIRIEFEIGDGITTIYSDEGKFVQVLYNLVSNAIKFTEEGG 633

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESF 764
            V + A ++      SVK+ G  I E+    +F+ FV        Q  G GLGL++V+  
Sbjct: 634 FVKVSARKNGDMLQLSVKDTGIGITEEDLMKIFHPFVQVDSFSTRQYEGTGLGLALVDQM 693

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + L GG + + S     +   C IP K
Sbjct: 694 VQLMGGEICVFSQPGIGSEFICMIPLK 720


>gi|186684847|ref|YP_001868043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467299|gb|ACC83100.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 738

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 167/395 (42%), Gaps = 27/395 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +  ++              +  S G+ +     +I  +NP    +       L     
Sbjct: 191 SERNVVQEALRQSEAKFRAIFERSSIGIGLIDMKAQIVDTNPVLCEILGYSREELYAKRF 250

Query: 480 IRNIA--------------------ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
              I+                       SR+  +    +  A      + ER+ L     
Sbjct: 251 TDYISIQKGDLKLYKQLVSEIGKNSGKTSRFGFQISKLEEQAVDKHRIEMERRCLHKDGS 310

Query: 520 LLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           L+  + +  S+IP  N +    +    ++T+    E  L    EA   A   K  F+  +
Sbjct: 311 LV-WTHISVSVIPDSNGEPEFFLAMIEDITERKETELKLRASQEAAEAASRAKTEFLATM 369

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL  I+G + LL+   +GSLN KQ++YV  I +S   LL L+NDILDL+ V+ G
Sbjct: 370 SHELRTPLNAIMGLSQLLQQEIVGSLNEKQNEYVSCIYSSGEHLLALINDILDLSKVEEG 429

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L  S + ++DL N    ++  +  E  +++    D +    +AD +R+ Q+   +L+
Sbjct: 430 KEELLLSPLPVSDLCNYAIWTVRDRASEKGLKLTYKIDLQEDICIADERRIKQMLLNLLT 489

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGV 754
           NA+ F+  G  V L   +      F+V + G  I  +  + +F  F     R   Q  G 
Sbjct: 490 NAIKFTPVG-NVSLVVKKVPQGITFTVSDTGIGIDPNQFQFLFEPFKQLDSRLNRQYEGT 548

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL++      LHGG V+++S+    +     +P
Sbjct: 549 GLGLALTRKLARLHGGDVTVTSTLGEGSQFTLFLP 583


>gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 956

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 117/564 (20%), Positives = 224/564 (39%), Gaps = 55/564 (9%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID--VSKEITVNDQLTH 307
             +++ + L   + + V+ ++  +++   IV           A D  +S    ++     
Sbjct: 273 TALLAENTLSALYKDIVNRIKDTDSQESVIVEEARELANIRSAFDTLISDLAEMSLSNEQ 332

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS-ANKLP 366
              ++ ++   + + D+N  +   N+ F    E            D+  E   +    L 
Sbjct: 333 FSNVIDSMGDMLLVVDENHRVMLSNKRFDAFCE------------DQYGEREGTVKYILN 380

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
           + +N  + +   FSV    E H    + P      +   ++   G I++  + + Q  LE
Sbjct: 381 KLINKPSGELKHFSVEDGLEKHIKWTNTP------LEDANHNIRGAIFVGVDYSTQRSLE 434

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGR---IKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +     V++    +D  +  + +         I   N AF  L    +          +I
Sbjct: 435 SH----VQILNHAMDEATVSIVIADIKRTGQPIIYVNNAFNRLTGYNK---------EDI 481

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSDSVLEYS---IIPLPNAQTM 539
                R+           A+I S   +R+ ++ T L    D    Y+   + P+ +   +
Sbjct: 482 IGRNCRFMQGEGTDSNTTALIRSAIAKREPIETTILNYRKDGASFYNKLILTPVKSDGEV 541

Query: 540 LTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             +     +VT   +AER L +  +   ++  +K+ F+  +S+E+R+P+  I G   LL 
Sbjct: 542 THYIGFQQDVTQQRQAERYLQDAKQKAEESAHMKSGFLASMSHEIRTPIHGISGVLQLLT 601

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    LN +Q  Y+   + S   LL++VNDILD + ++AG ++++     L + L  ++
Sbjct: 602 NS---PLNDEQKHYLSLATFSIQGLLHIVNDILDFSKIEAGQLQIDDQPFDLLETLESLQ 658

Query: 656 QSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
              A    E  +R+    + +     + D  R  QI S ++ NA+ F+ KG   V     
Sbjct: 659 SQYAILCQEKGLRLHFHFNLQGFHVVIGDSVRFRQILSNLIGNAVKFTEKGEIDVTTTLE 718

Query: 714 RDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             N D      +VK++G  I +D    +F+ F        R   G GLGLSI +    L 
Sbjct: 719 HTNDDKLRLTCAVKDSGIGIAKDKQAGIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELM 778

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
            G + + S     +T    I  KE
Sbjct: 779 DGEIHLESEKGEGSTFTFNIMLKE 802


>gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1186

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 140/787 (17%), Positives = 290/787 (36%), Gaps = 96/787 (12%)

Query: 71   KYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA 130
            +Y +L  ++     + D +    +      +     + +   L   + +      ++ + 
Sbjct: 276  RYRNLFEKSTEGVFLHDLEGNILDANESALEMFGYTREELIRLHPSSLVHPEEVQQVREE 335

Query: 131  TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS---LDGIYSELAETTLKCKK 187
             E +++    F           ++ +GR        R++S   + G+  ++     + K 
Sbjct: 336  FEDIKRNQSRFSEH------RCLRSDGREIMVITRGRLVSENMIQGVLRDVTRERQQEKA 389

Query: 188  LSNHISVFKVLFDSLDFLVWHRDQAGDIL-----WANISYKKNTETEGIVFQKAIGESRK 242
            L       + + + L  +V   +  G  L     +    Y+   E  G      + E   
Sbjct: 390  LRESEEYIRTIMEVLPDIVIKTNLQGVCLDVLGDFQAKLYRPKEEVLGRYIPDVVPEEVG 449

Query: 243  LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV--LNSFGEAGIAIDVSK--- 297
                +     +++  L+    E    LE  +   Y   R+  LN      +  D+++   
Sbjct: 450  TRFMQGVNNALTTGDLQMVEYE----LEIDSRTFYFESRIMPLNEEEVIALIRDITENRR 505

Query: 298  -EITVNDQLTHTYEILHNLTVAIAIFD---QNRYL-QFHNRSFVELWEIDLAFLATNPSN 352
                + +  +   ++      ++ + D     + L +  N++  EL     +FL  NP  
Sbjct: 506  ALAALEESESRYRQLFQESPASMLVEDFSQVQKRLGEIKNQADGEL----DSFLKENPQF 561

Query: 353  -----------------------DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
                                     L EF R    +  + +W+ +   + +V+   ++  
Sbjct: 562  VQEMAELVRIVDVNQTALKQFHAASLEEFTRGIATVFARDSWQEFMGELAAVFHGEKSFF 621

Query: 390  DTWHL--PNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
                L   NG+  +V +               +    ++T    +E        +    +
Sbjct: 622  TEKRLQNLNGEIRNVQLKWSVMPGCEQDFSRVLVCIVDITGLKSIEEDLRHKNMLLNGVL 681

Query: 441  DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            D++ + ++V  PD  +   N     L   +EN +              +   E    +  
Sbjct: 682  DNMPDFMSVKLPDLTVVRYNRTGYELLGMDENEVQ------------GKKCYELMNQEFP 729

Query: 501  AAIITSFDDERKSLQGTLELLS---DSVLEYSIIPLPNAQTMLTF-----VNVTDSVRAE 552
                 + D  ++  Q   EL     +        P+ N +  + +      ++T    +E
Sbjct: 730  CQPCATLDALKRGGQADHELYFPQFERYFSCRANPILNEEGRVEYVVELLRDITQRKESE 789

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
              L    E    A++ K+ F+ ++S+E+R+P+  I+G   LL+ +   SL+ +Q Q VE 
Sbjct: 790  AELQMAWEKAEAANKAKSEFLANMSHEIRTPINGIMGGLQLLEAT---SLDHEQKQLVEM 846

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              AS+  L  L+ DILDL+ ++AG M++  +   ++ L   ++   A    E N+RI   
Sbjct: 847  GIASARRLTRLLTDILDLSRIEAGKMEIRKADFEVDRLCTSIEDLFAASAAEKNVRISCT 906

Query: 673  SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI--FSVKNN 726
             D +L   +  D  R+ QI   ++ NA+ F+    TV L      R   +     SV ++
Sbjct: 907  LDPRLPPILAGDDARIQQILLNLVGNALKFTHDD-TVELHWHLLRRQGNELRVLISVADS 965

Query: 727  GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I ++    +FN FV           G GLGLSIV   + + GG++S+ S+    +T 
Sbjct: 966  GLGISDEKLGEIFNPFVQADGAFTRNFEGAGLGLSIVVRLVQMMGGNISVESTPGEGSTF 1025

Query: 785  NCRIPSK 791
               +P +
Sbjct: 1026 YVSLPLE 1032



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 70/496 (14%), Positives = 166/496 (33%), Gaps = 52/496 (10%)

Query: 87  DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS--FDLV 144
                  +I+G        PQ   D      W  F            L  + +   F+  
Sbjct: 42  SANPALAQILG-----YSDPQDILDKTGGTAWQSFADARDWQGLYRMLEADNEVANFECR 96

Query: 145 AETQNDCAIKIEGRVSGS--CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
              +++  + +    +G+      R++ + G  ++++E  L    L      +++L +S 
Sbjct: 97  LLCRDNNPLWVSI-TAGAIRDDTGRLMYIRGFVTDISERKLAENALRRSEERYRMLSEST 155

Query: 203 DFLVW--HRDQAG-DILWANISYKKNTETEGIVFQKAIGESRKLFKEE---IKKRMISSS 256
           +  ++     Q G ++ W   + +K T             S  +  E+    ++ +    
Sbjct: 156 NDFIFSCVEGQTGHNLEWLAGAVEKITGYSVEDILANQCWSFLVHPEDRYLFREHITECE 215

Query: 257 ALEKNFCETVSTLEHGNNKSYKIV------RVLNSFGEAGIAIDVS----KEITVNDQLT 306
             +   CE       G     ++           S    G   D++     E  + +   
Sbjct: 216 PGQTKECELRILRRDGQTCWLQVASSCFLEDERGSKKVYGACRDITGKKTAEKALQESEF 275

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +    T  + + D    +   N S +E++           + +EL+    S+   P
Sbjct: 276 RYRNLFEKSTEGVFLHDLEGNILDANESALEMFGY---------TREELIRLHPSSLVHP 326

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNPRGGTI--WMFENLTVQV 423
           E++  +  +E    + ++     +   L  +G+ + VI         +   +  ++T + 
Sbjct: 327 EEV--QQVREEFEDIKRNQSRFSEHRCLRSDGREIMVITRGRLVSENMIQGVLRDVTRER 384

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             E       +     ++ L + V      G  + +       L++ +E  L  G +I +
Sbjct: 385 QQEKALRESEEYIRTIMEVLPDIVIKTNLQGVCLDVLGDFQAKLYRPKEEVL--GRYIPD 442

Query: 483 IAATCSRYYNESDGWDLFAAIITSF-DDERKSLQGTLELLSDS-VLEYSIIPLPNAQTML 540
           +         E  G      +  +    + + ++  LE+ S +   E  I+PL   + + 
Sbjct: 443 VV-------PEEVGTRFMQGVNNALTTGDLQMVEYELEIDSRTFYFESRIMPLNEEEVIA 495

Query: 541 TFVNVTDSVRAERALT 556
              ++T++ RA  AL 
Sbjct: 496 LIRDITENRRALAALE 511



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 59/394 (14%), Positives = 118/394 (29%), Gaps = 44/394 (11%)

Query: 201 SLDFLVWHRDQAGDILWANIS------YKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
           S    +   D  G +L AN +      Y    +        A          +   RM+ 
Sbjct: 26  SAPIGILTVDPGGMLLSANPALAQILGYSDPQDILDKTGGTAWQSFADARDWQGLYRMLE 85

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFGEA----GIAIDVSKEITVNDQLTHT 308
           +     NF   +   ++ N     I    + +  G      G   D+S+     + L  +
Sbjct: 86  ADNEVANFECRLLCRDN-NPLWVSITAGAIRDDTGRLMYIRGFVTDISERKLAENALRRS 144

Query: 309 YEILHNLTVAIAIF-------DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            E    L+ +   F            L++   +  ++    +  +  N    +   FL  
Sbjct: 145 EERYRMLSESTNDFIFSCVEGQTGHNLEWLAGAVEKITGYSVEDILAN----QCWSFLVH 200

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSN----PRGG---TI 413
               PE  +   ++E+I           +   L  +GQT  + V S+       G     
Sbjct: 201 ----PE--DRYLFREHITECEPGQTKECELRILRRDGQTCWLQVASSCFLEDERGSKKVY 254

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               ++T +   E              +  +EGV +   +G I  +N +   ++      
Sbjct: 255 GACRDITGKKTAEKALQESEFRYRNLFEKSTEGVFLHDLEGNILDANESALEMFGYTREE 314

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L        +     +   E   ++      + F + R       E++    +      +
Sbjct: 315 LIRLHPSSLVHPEEVQQVREE--FEDIKRNQSRFSEHRCLRSDGREIM----VITRGRLV 368

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                     +VT   + E+AL E  E +R   E
Sbjct: 369 SENMIQGVLRDVTRERQQEKALRESEEYIRTIME 402


>gi|256831176|ref|YP_003159904.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256580352|gb|ACU91488.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 878

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 109/517 (21%), Positives = 213/517 (41%), Gaps = 51/517 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V +       IL  L V IAI  Q+R ++  N +   L +I+  +             
Sbjct: 258 AAVVEANAGMERILEALPVGIAILGQDRIIRRVNLAATNLLDIEPGWFFERH-------- 309

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNP---RGGTIW 414
                 +P  + ++  + +        E   +       G+TL VI +S P   +G T+ 
Sbjct: 310 ------VPWDMFYENVQSDDPERQPRIEFEHEVRMRALEGRTLDVIKSSIPVILQGETLI 363

Query: 415 M--FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +  F ++T +   E +           +  ++EGVA+    G +   N +   +   + +
Sbjct: 364 LEVFMDVTQRKQAERELLQEKSRLESLLSGINEGVALTDERGGVLEVNESLCRILGAKAH 423

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSDSVLEYSII 531
            L               + +   G  L   +    ++ R  L+   LE   D  L   + 
Sbjct: 424 DLLGRK-------VWDLFPDGILGTQLAQGLRALQENPRTRLREIQLESFRDMALVVRMQ 476

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+   +     +     V A   + +       A + K+ F+ ++S+E+R+P+ +I+G  
Sbjct: 477 PVLGEEAFGGMIVSVIEVTA---IVDARRRAEAASQAKSMFLANMSHEIRTPMNSILGHG 533

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL  ++   L+++Q+  V+ I   +  LL ++NDILD + ++AG++++    + L  LL
Sbjct: 534 ELLARTR---LDTEQADCVQGIRVCAESLLVIINDILDFSKIEAGMLRIAPEDVDLGGLL 590

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             V+  ++ +  +  + +++++ G       D  RL QI   ++ NA+ F+  G  V L 
Sbjct: 591 ARVRTMLSEQAQKKGLDLQLVTAGLPQVVSTDAGRLTQILVNLVGNAIKFTEHGG-VELS 649

Query: 712 AARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
              +          FSV++ G  I  D  K +F  F         +  G GLGL+I  S 
Sbjct: 650 VRGEAHAGGKAALCFSVRDTGIGISADRQKGIFVSFEQADGSLTREYGGTGLGLTIANSL 709

Query: 765 INLHGGH-VSISSSDEGVTTINCRI--------PSKE 792
           + L GG  +S+ S     +T +  +        P++E
Sbjct: 710 VRLLGGSGISVKSQTGQGSTFSFTLVMNVSAPAPAQE 746



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 86/286 (30%), Gaps = 29/286 (10%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           L         +    +  + + ++L   +    Q   I   N++     + E   F +  
Sbjct: 250 LRSREKDGAAVVEANAGMERILEALPVGIAILGQDRIIRRVNLAATNLLDIEPGWFFE-R 308

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI---- 293
                +F E ++          +   E       G  ++  +++        G  +    
Sbjct: 309 HVPWDMFYENVQSDDPERQPRIEFEHEVRMRALEG--RTLDVIKSSIPVILQGETLILEV 366

Query: 294 --DVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             DV++      +L      L +L       +A+ D+   +   N S   +       L 
Sbjct: 367 FMDVTQRKQAERELLQEKSRLESLLSGINEGVALTDERGGVLEVNESLCRILGAKAHDLL 426

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                D            P+ +      + + ++ ++  T      L + + + ++V   
Sbjct: 427 GRKVWDLF----------PDGILGTQLAQGLRALQENPRTRLREIQLESFRDMALVVRMQ 476

Query: 408 PR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           P       GG I     +T  VD   +     + +   + ++S  +
Sbjct: 477 PVLGEEAFGGMIVSVIEVTAIVDARRRAEAASQAKSMFLANMSHEI 522


>gi|301163089|emb|CBW22638.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 892

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/515 (20%), Positives = 220/515 (42%), Gaps = 34/515 (6%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N   ++    ++  L F NR F          L   
Sbjct: 234 GYIQNITDIQRKRNDINTLTHAINNAKESVYAARRDGTLIFANRQFR---------LNHR 284

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----------NGQT 399
            +    L  +R  + + +    + W+E   S+ +  +T     + P           G  
Sbjct: 285 IAEQADLSLIRVFDVVGDMTCIEDWEERYRSI-REGQTLNFLAYQPLKHDKNTLAFEGTM 343

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--PDGRI 456
             V  T++    T W F  +++ ++  E++     ++   T++++  G+ V     D R 
Sbjct: 344 YSV--TTDDGEETFWSFTHDISERIRYESQIKRFNRIMDTTMENIPAGIVVKDIENDFRY 401

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N    +   + EN +             ++   + D           +  E K   G
Sbjct: 402 IYRNRESYNRDISSENAIGM-NDFDYYPPEMAQQKRKEDMEIAATGKGMHWIMEGKDKNG 460

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            L +L    +        +   +    ++T      R L E  E    +D++K++F+ ++
Sbjct: 461 NLLILDKQKIMVESEDF-SPIIVSIEWDITQLELMRRELIESKEKAETSDKLKSAFLANM 519

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+ ++  S       ++ +Y E + A++  LL L+N+ILDL+ +++G
Sbjct: 520 SHEIRTPLNAIVGFSRIISESDNA---EERREYYEIVDANNERLLQLINEILDLSKIESG 576

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           I++  Y  + L+ L  E+  +   +  +  + ++  S  +  S  +D+ R+ Q+FS ++ 
Sbjct: 577 IVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFDSPDEALSIHSDKNRIFQVFSNLIG 635

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA  F+++GS V     ++    +F VK+ G  I  +    VF RF    +  Q  G GL
Sbjct: 636 NAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLNNFAQ--GTGL 692

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI ++ I   GG +++SS     TT    +P +
Sbjct: 693 GLSICKTIIERLGGEIAVSSEVGTGTTFTFWLPLE 727


>gi|119509764|ref|ZP_01628909.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
 gi|119465630|gb|EAW46522.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
          Length = 1389

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/506 (17%), Positives = 191/506 (37%), Gaps = 38/506 (7%)

Query: 306  THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 +L ++ + I +   N  ++ +     +++ +  +            +  R  + +
Sbjct: 743  NDLQNLLSSINIPILMLGGNLQIRRYTPVAEKIFNLISS------------DMGRPISDI 790

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLT 420
               LN    ++ I  V  +           NG+   + +       N   G + +  ++ 
Sbjct: 791  NHNLNIPDLEKQILDVIGTLNFKTQEVQDKNGRWYDLRIRPYRTIDNKIDGAVVILVDID 850

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                   +  T        +D + E + V   + R+  +N  F   ++            
Sbjct: 851  DLKRSSEQLRTSRDYVQAIVDTMRESLVVLDVNLRVISANEFFYDTFQVSPAETEQ---- 906

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            R I    +  +N      L   I+   +  +   ++   E +   ++  +   +      
Sbjct: 907  RLIYEMGNGQWNIPQLRSLLEEILPHHNQFQGLEVEHNFEQIGHKIMRLNARKMTLTDNR 966

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEI-----------KNSFVQHVSYELRSPLTNII 588
               + V + +  ++ L  +   L   ++            K+ F+  +S+ELR+PL +++
Sbjct: 967  EMILLVIEDITQQKQLEAERTHLLGQEQSARNAAEAANRAKDEFLSILSHELRNPLNSML 1026

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            G++ LL+  +        ++ +  I  S+    +L+ D+LD++ + AG ++++   + L 
Sbjct: 1027 GWSKLLQKKQFDQAT--INKGLAAIERSAQAQAHLIKDLLDISRISAGRLRIDAQKLDLV 1084

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             ++    + +       NI+I+        S V D  RL Q+F  +LSNA+ F+  G  V
Sbjct: 1085 SVIESAMEVVRFSAEAKNIQIESNLAPAPRSMVGDANRLQQVFWNLLSNAIKFTPSGGKV 1144

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             +     +      + + G  I  D    VF RF        R   G+GLGLSIV   + 
Sbjct: 1145 TISLDYTDFQAQIQISDTGYGISADFLPHVFERFRQADGSRTRSNPGLGLGLSIVRYLVE 1204

Query: 767  LHGGHVSISSS-DEGVTTINCRIPSK 791
            LHGG +   S  +    T   R+P +
Sbjct: 1205 LHGGTIDAESQGEGQGATFTVRLPLQ 1230



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 84/281 (29%), Gaps = 37/281 (13%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E   +  + +   +  + L  S++  +        I       +K          + I +
Sbjct: 730 ELQRRNIQSNEVTNDLQNLLSSINIPILMLGGNLQIRRYTPVAEKIFNLISSDMGRPISD 789

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS------FGEAGIAI 293
                     ++ I    +          ++  N + Y +             G   I +
Sbjct: 790 INHNLNIPDLEKQI--LDVIGTLNFKTQEVQDKNGRWYDLRIRPYRTIDNKIDGAVVILV 847

Query: 294 DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+      ++QL  + +    I+  +  ++ + D N  +   N  F + +++  A     
Sbjct: 848 DIDDLKRSSEQLRTSRDYVQAIVDTMRESLVVLDVNLRVISANEFFYDTFQVSPAETEQR 907

Query: 350 ------------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
                       P    LLE +     LP    ++        V  + E         N 
Sbjct: 908 LIYEMGNGQWNIPQLRSLLEEI-----LPHHNQFQG-----LEVEHNFEQIGHKIMRLNA 957

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           + + +      R   + + E++T Q  LE +   L+  +  
Sbjct: 958 RKMTLTDN---REMILLVIEDITQQKQLEAERTHLLGQEQS 995


>gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 454

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 172/399 (43%), Gaps = 21/399 (5%)

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKV---QGETIDHLSEGVAVFGPDGRIKLSNP 461
           T  P G T+     + +  + ET+    ++V       I++  E + +  PDGR+  +N 
Sbjct: 59  TPLPGGQTL-----VELAPEAETRLRDSLRVNVEMRAIIENTFEFIGLLSPDGRLLDANR 113

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
              +    +      G H    A T    ++  +   L   I  +   E    + T    
Sbjct: 114 TALAFIGLDSLAPVLGMHF---AETPWWEHSPEERAILRDGISRAAKGEFVRFETTHVDA 170

Query: 522 SDSV--LEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
              +  +++S+ P+P+ +      +    ++T   RAE AL    +    A+  K+ F+ 
Sbjct: 171 DGGIAYVDFSVKPVPDHEGNILFLVPEGRDITQRKRAEAALVAAKQEAEAANRAKSQFLA 230

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATV 633
            VS+ELR+PL  +IGF++ +     G  +  +  +Y++ I ++   L  L+ DILD++ +
Sbjct: 231 TVSHELRTPLNAVIGFSEAILAGATGPASLERCVEYMDLIHSAGQHLRALIEDILDVSRI 290

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG  +L+       +L+    + +  K     +   V+    L     D +R+ Q+   
Sbjct: 291 EAGRTELDEEEADPAELVRAAARLLEHKAVVTGVDFTVVIAPDLPRMRLDPRRIRQVLLN 350

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQR 751
           +  NA+ F+  G  V + A         +V++ G  I  +    V+  F         + 
Sbjct: 351 LAGNALKFTPAGGRVGISAEHVPEGLALTVEDTGIGIAPEHHAKVWQAFYQADSSLSRRH 410

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +G GLGL+IV  F+  HGG VS++S     T I   +P+
Sbjct: 411 QGSGLGLAIVRHFVEAHGGTVSLASEAGKGTRITVLLPA 449


>gi|325103345|ref|YP_004272999.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324972193|gb|ADY51177.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1304

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/623 (18%), Positives = 233/623 (37%), Gaps = 45/623 (7%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR------KLFKEEI 248
           F+  F++   L+   D  G+I+  N   +          +K             L +  +
Sbjct: 296 FRNFFENAIGLMSMHDMDGNIIAVNEKGRDILHYTAEEVKKLNLRQLVPPHHIPLLESYL 355

Query: 249 KKRMISSSALEKNFCETVS-TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           ++   +    +    +T   T  +    +     +         A++++  I +   L H
Sbjct: 356 ERIARNKEDSDMMVLQTKDGTPIYWLYHNMLETDLEGKPYVVSTALNMTDRIQLEHDLLH 415

Query: 308 TYEILHNLTVAIAIF-----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           T +IL   T A+A       D  +   + +     +  +   F+   P  D  + F    
Sbjct: 416 TKQILEQ-TNAVAQVGGWEVDLEKNKVYWSDPTKIIHGVKKDFV---PDLDSAIGFF--- 468

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPR------GGTIW 414
               E  + K  +E          ++     L   +G+++ V V   P            
Sbjct: 469 ----EPESKKKVREIFEQAVVKGTSYDIELRLRKQDGESIWVRVKGVPEFEEGKCKRVFG 524

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + +++     L  +      +    ++++   VA+F  D      +  +   +   +  L
Sbjct: 525 IIQDINQSKTLYLELERKEAMLQAFVNYVPASVAMFDRDFNYVFVSNQWIEDFHQGKADL 584

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIP 532
                             +    +          +E  S+ G  E    +  V  + +  
Sbjct: 585 LNRNFFELFPHIPQER--KKIYKEALEGKPYKNTNEIISVGGISEPQHFNWEVRPWHLRD 642

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 ++   N+++SV+    L +       A + K+ F+ ++S+E+R+PL  +IGF+D
Sbjct: 643 GGIGGIIIFTQNISESVKVNEELKKAKTFADLASKAKSEFLANMSHEIRTPLNGVIGFSD 702

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +    LN  Q QY+ YI+ S   LL+++NDILD + ++AG ++L      + D+ N
Sbjct: 703 LLLKT---PLNETQKQYLNYINESGNSLLSIINDILDFSKIEAGKLELFIDKFNIYDIAN 759

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-- 709
           +V   +  +    ++ + +  +  L  S   D  R+ Q+   +L NA+ F+  G   +  
Sbjct: 760 QVINIVLYQAQRKDVELLLNIEQGLPSSIWVDESRIKQVLINLLGNAVKFTEHGEIELKI 819

Query: 710 --LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
             L +  D     FSV++ G  IP+D  + +F  F         +  G GLGL+I  + +
Sbjct: 820 EKLSSYNDKITLRFSVRDTGIGIPKDKQQRIFEAFTQEDSSVSKRYGGTGLGLTISNNLL 879

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
           N     + + S     +     +
Sbjct: 880 NYMKSKLQLKSEPGKGSIFYFDL 902



 Score = 37.6 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 94/272 (34%), Gaps = 17/272 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                +  +  EI+      I + D    L+  N +F E   I  +          LL+ 
Sbjct: 166 KKQKVEAEYFSEIVRLSKNMICVLDSQFLLKEINPAFSEGLGISRSAALGK----SLLDI 221

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--QTLHVIVTSNPRGGTIWMF 416
           L+  +  PE L      + +    +  +    T    NG   T+      +   G I+ F
Sbjct: 222 LQDKDHTPEGL-----LKKLIGTTQGIQLVTTT-QKENGKKTTIDWHFKYDSANGEIFAF 275

Query: 417 -ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             N T +++ + K     +      ++    +++   DG I   N   R +       + 
Sbjct: 276 GRNTTKELEEKLKLENSERRFRNFFENAIGLMSMHDMDGNIIAVNEKGRDILHYTAEEVK 335

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSDSVLEYSIIPLP 534
              ++R +         ES    +      S     ++  GT +  L  ++LE  +   P
Sbjct: 336 K-LNLRQLVPPHHIPLLESYLERIARNKEDSDMMVLQTKDGTPIYWLYHNMLETDLEGKP 394

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
               + T +N+TD ++ E  L    + L + +
Sbjct: 395 --YVVSTALNMTDRIQLEHDLLHTKQILEQTN 424


>gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 595

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 173/392 (44%), Gaps = 27/392 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q++      N   +     +  +++GV     DG I ++NP
Sbjct: 221 ILTHDEIGELATAFNQMGRQLNFHINALNQEKEQLSNILSSMADGVITINIDGTILVTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +      +        +   +  +LF   + +  ++ + ++ TL+  
Sbjct: 281 PAERFLQAWYYEQNMNVQADD--------HLPPEAKELFQNTVNT--EKEQMIEMTLQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S  +L   + PL     +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 SWVLL---MSPLYAQSHVRGAVAVLRDMTEERRL----------DKLREDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +      S + +  +  + I   S  +  LVND+LDLA +++G   L+
Sbjct: 378 TPISMLQGYSEAIVDDIASSEDDR-KEIAQIIYDESLRMGRLVNDLLDLARMESGHTALH 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y  + L++ L ++ +  +    E NI +          F  D  ++ Q+F+ ++ NA+  
Sbjct: 437 YVKVNLDEFLEKIFRKFSGVAKEKNISLTDDISLNETEFAFDEDKMEQVFTNLIDNALRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +  G TV +            VK++GS IPE+    +F RF        R   G GLGL+
Sbjct: 497 TQSGGTVHIAVQSVKDGLKIDVKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV++ +  H G +++ S  +  TT    IP+K
Sbjct: 557 IVKNIVEAHNGSITVHSRIDKGTTFTFYIPTK 588


>gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 454

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 162/380 (42%), Gaps = 16/380 (4%)

Query: 424 DLETKYNTLVKV---QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           + E +    ++V       I++  E + +  PDGR+  +N    S    E      G H 
Sbjct: 73  EAEARLRDSLRVNLEMRAIIENTFEFIGLLSPDGRLLDANRTALSFIGLESIEPILGVHF 132

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNAQT 538
              A T    ++  +   L   I  +   E    + T       +  +++S+ P+P+   
Sbjct: 133 ---AETPWWEHSPKERAMLKDGITRASAGEFVRFETTHIDAHGGIAYVDFSVKPVPDRDG 189

Query: 539 -----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    ++T   RAE AL    +    A+  K+ F+  +S+ELR+PL  +IGF++ 
Sbjct: 190 NIQFLVPEGRDITQRKRAEAALVSAKQEAEAANRAKSQFLATMSHELRTPLNAVIGFSEA 249

Query: 594 LKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +     G  +  +  +Y+E I ++   L  L+ DILD++ ++AG  +L+       +L+ 
Sbjct: 250 ILAGAAGPASLERCVEYMELIHSAGQHLRALIEDILDVSRIEAGRTELDEEDCDPTELVR 309

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              + +  K   + +   V+    L     D +R+ QI   +  NA+ F+  G  V + A
Sbjct: 310 AAARLLEHKSVVSGVDFTVVIAPGLPRMRLDPRRIRQILLNLAGNALKFTPTGGKVGICA 369

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
                     V + G  I  +    ++  F         + +G GLGL+IV  F+  HGG
Sbjct: 370 TLVPDGLALVVSDTGIGIAPEHHAKIWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGG 429

Query: 771 HVSISSSDEGVTTINCRIPS 790
            VS+ S+    T I   +P+
Sbjct: 430 TVSLDSAPGQGTRITVLLPT 449


>gi|253565261|ref|ZP_04842716.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945540|gb|EES85947.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 899

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 108/515 (20%), Positives = 220/515 (42%), Gaps = 34/515 (6%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N   ++    ++  L F NR F          L   
Sbjct: 234 GYIQNITDIQRKRNDINTLTHAINNAKESVYAARRDGTLIFANRQFR---------LNHR 284

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----------NGQT 399
            +    L  +R  + + +    + W+E   S+ +  +T     + P           G  
Sbjct: 285 IAEQADLSLIRVFDVVGDMTCIEDWEERYRSI-REGQTLNFLAYQPLKHDKNTLAFEGTM 343

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--PDGRI 456
             V  T++    T W F  +++ ++  E++     ++   T++++  G+ V     D R 
Sbjct: 344 YSV--TTDDGEETFWSFTHDISERIRYESQIKRFNRIMDTTMENIPAGIVVKDIENDFRY 401

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N    +   + EN +             ++   + D           +  E K   G
Sbjct: 402 IYRNRESYNRDISSENAIGM-NDFDYYPPEMAQQKRKEDMEIAATGKGMHWIMEGKDKNG 460

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            L +L    +        +   +    ++T      R L E  E    +D++K++F+ ++
Sbjct: 461 NLLILDKQKIMVESEDF-SPIIVSIEWDITQLELMRRELIESKEKAETSDKLKSAFLANM 519

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+ ++  S       ++ +Y E + A++  LL L+N+ILDL+ +++G
Sbjct: 520 SHEIRTPLNAIVGFSRIISESDNA---EERREYYEIVDANNERLLQLINEILDLSKIESG 576

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           I++  Y  + L+ L  E+  +   +  +  + ++  S  +  S  +D+ R+ Q+FS ++ 
Sbjct: 577 IVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFDSPDEALSIHSDKNRIFQVFSNLIG 635

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA  F+++GS V     ++    +F VK+ G  I  +    VF RF    +  Q  G GL
Sbjct: 636 NAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLNNFAQ--GTGL 692

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI ++ I   GG +++SS     TT    +P +
Sbjct: 693 GLSICKTIIERLGGEIAVSSEVGTGTTFTFWLPLE 727


>gi|212691328|ref|ZP_03299456.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
 gi|212666081|gb|EEB26653.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
          Length = 781

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 112/550 (20%), Positives = 221/550 (40%), Gaps = 19/550 (3%)

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLT 306
           I   +  + A  +           G    Y+  +  L+      +  D+S+ +     L 
Sbjct: 101 IHNNLQKAIATGRGSTAHHELDVDGTLHYYENRIFPLDEEYVLIMCRDISERVATQQNLE 160

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L  ++ +I     +  L + NR F+E + +    L T    D  L    +  ++ 
Sbjct: 161 IFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKEE-LGTQKVYD--LPVSLNTKEIF 217

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDL 425
           ++   +         Y++  T      L   Q    ++  N     IW F +++T  +  
Sbjct: 218 DKRVQEIRDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQ-NQGEEMIWFFTQDITDVIKN 276

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             +   L  +    ++++   + V  P  D R    N AF S  K   ++          
Sbjct: 277 RDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGHIDFEVF 336

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLT 541
               +      D  +L        + +   +  T E      L+ +++PL       +  
Sbjct: 337 PEHENAEKFHRDDLELIRT-RERMEMQETYVTATGETRIVQTLK-TLVPLEGRAPLIIGI 394

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T+    E+ L +      ++D +K +F+ ++S+E+R+PL  I+GF+ L+    +  
Sbjct: 395 SWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEIRTPLNAIVGFSRLM---TMAD 451

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             + +  Y + I+ +S ILL L+NDILDLA ++AG ++     + L +L   V +    +
Sbjct: 452 NVADEKLYSDIINQNSEILLQLINDILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDR 511

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    + + + +         D+ R++Q+ + +++NA+ F+ KG  +            F
Sbjct: 512 VQT-GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAIKFTFKGE-IRFGFEVRKEYIDF 569

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            VK+ G  I E+  K +F RFV      Q  G GLGL+I    +   GG ++  S     
Sbjct: 570 YVKDTGMGISEEKIKMIFERFVKLNTFVQ--GTGLGLAICRVIVEKIGGEITAESKLNEG 627

Query: 782 TTINCRIPSK 791
           +T    IP K
Sbjct: 628 STFRFTIPYK 637



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 97/293 (33%), Gaps = 39/293 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           +      ++ +FK + D +   +      G +++AN  + +    +  +  + + +    
Sbjct: 151 ERVATQQNLEIFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKEELGTQKVYDLPVS 210

Query: 244 FK--EEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVL----NSFGEAGIAIDV 295
               E   KR+        NF         G    + +++   +              D+
Sbjct: 211 LNTKEIFDKRVQEIRDNGGNFAYRAKYTRVGETKLRVHQVSAFMIQNQGEEMIWFFTQDI 270

Query: 296 SKEITVNDQLTH----TYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATN 349
           +  I   D+L         IL+N+ V + + D        + N++F    +I  +    +
Sbjct: 271 TDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWNKAFASHSKIPASKALGH 330

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIV--T 405
              +            PE  N + +  +   + ++ E  +  +T+    G+T  V    T
Sbjct: 331 IDFEVF----------PEHENAEKFHRDDLELIRTRERMEMQETYVTATGETRIVQTLKT 380

Query: 406 SNPRGG----TIWMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
             P  G     I +  ++T         V    K     +++   + ++S  +
Sbjct: 381 LVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEI 433



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 57/172 (33%), Gaps = 23/172 (13%)

Query: 306 THTYEILHNLTVAIAIFDQN--RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
            +   IL +L   + +F+          N                  SN++    +R  +
Sbjct: 43  KYAVRILDSLPDMLTVFNHEETGIEVVSN----------EETNHVGVSNNDFKG-MRMQD 91

Query: 364 KLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQT--LHVIVTSNPRGGTIWMFENL 419
            +P++   N     +   +  + S  H +     +G        +        + M  ++
Sbjct: 92  MVPKEAYHNIHNNLQKAIATGRGSTAHHEL--DVDGTLHYYENRIFPLDEEYVLIMCRDI 149

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           + +V  +      +++    +D +S+ +     DG +  +N  F   +  +E
Sbjct: 150 SERVATQQN----LEIFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKE 197


>gi|53713284|ref|YP_099276.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216149|dbj|BAD48742.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 899

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 108/515 (20%), Positives = 220/515 (42%), Gaps = 34/515 (6%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N   ++    ++  L F NR F          L   
Sbjct: 234 GYIQNITDIQRKRNDINTLTHAINNAKESVYAARRDGTLIFANRQFR---------LNHR 284

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----------NGQT 399
            +    L  +R  + + +    + W+E   S+ +  +T     + P           G  
Sbjct: 285 IAEQADLSLIRVFDVVGDMTCIEDWEERYRSI-REGQTLNFLAYQPLKHDKNTLAFEGTM 343

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--PDGRI 456
             V  T++    T W F  +++ ++  E++     ++   T++++  G+ V     D R 
Sbjct: 344 YSV--TTDDGEETFWSFTHDISERIRYESQIKRFNRIMDTTMENIPAGIVVKDIENDFRY 401

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N    +   + EN +             ++   + D           +  E K   G
Sbjct: 402 IYRNRESYNRDISSENAIGM-NDFDYYPPEMAQQKRKEDMEIAATGKGMHWIMEGKDKNG 460

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            L +L    +        +   +    ++T      R L E  E    +D++K++F+ ++
Sbjct: 461 NLLILDKQKIMVESEDF-SPIIVSIEWDITQLELMRRELIESKEKAETSDKLKSAFLANM 519

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+ ++  S       ++ +Y E + A++  LL L+N+ILDL+ +++G
Sbjct: 520 SHEIRTPLNAIVGFSRIISESDNA---EERREYYEIVDANNERLLQLINEILDLSKIESG 576

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           I++  Y  + L+ L  E+  +   +  +  + ++  S  +  S  +D+ R+ Q+FS ++ 
Sbjct: 577 IVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFDSPDEALSIHSDKNRIFQVFSNLIG 635

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA  F+++GS V     ++    +F VK+ G  I  +    VF RF    +  Q  G GL
Sbjct: 636 NAFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLNNFAQ--GTGL 692

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI ++ I   GG +++SS     TT    +P +
Sbjct: 693 GLSICKTIIERLGGEIAVSSEVGTGTTFTFWLPLE 727


>gi|307151277|ref|YP_003886661.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306981505|gb|ADN13386.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1719

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/668 (18%), Positives = 245/668 (36%), Gaps = 71/668 (10%)

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKN 225
            RI  + G   E+ E     + L   +      F++    +   D++   + W+  + ++ 
Sbjct: 1070 RIFRIIGTALEITELKRTERALKQALQQIDAHFENSPLGIVQWDKSFHVLRWSKQA-EQM 1128

Query: 226  TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--------SY 277
                    +    +       E +  + + +    N   T  T+ + N           +
Sbjct: 1129 FGWSAEEVKSHFWQDWNFVHREDQDLVNAVTTAFMNGLITNQTIINRNVTKEGRVMICQW 1188

Query: 278  KIVRVLNSFG----EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQ 329
                V +  G          D+++      +L    E    I +  T AI + D +  L 
Sbjct: 1189 DSSAVFDEMGNLVSVLSFVQDITERKQAELELQKQKELRETIFNESTDAIFLVDPHTLLI 1248

Query: 330  F-HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP---EQLNWKTWKENIFSVYKSS 385
               NR  VEL+E+          +D +    RS  + P   E++   T + +    +   
Sbjct: 1249 TDCNRRAVELFEVPS-------KDDLIGTEGRSLQRYPFTTEEIEQITQEMDEKGFW--- 1298

Query: 386  ETHKDTWHLPNGQTLHVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             + +  +    G      + + P         +    ++  +   +       +      
Sbjct: 1299 -SLELEYITGKGNLFWGNIAAKPFVIADMRVNLIRVTDINTRKRAQEALRESEERFRRAF 1357

Query: 441  DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            +  + G+A+     R    N +   +    E  L       +I        N +    + 
Sbjct: 1358 EDAAIGMALVNLHRRFLKVNRSLCEMIGYSEAELLR-LTFEDITHPDDLETNLAALEQML 1416

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
                +++  E++ L     L+       S+  + +   +  +  V     +ER       
Sbjct: 1417 KGEYSTYQVEKRYLHQEGRLI---WAISSVSLIKDQDHLPLYYVVQIQDISER------- 1466

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               K D +K+ F+  VS+ELR+PLT I G   +L++  L       ++ ++    +S  L
Sbjct: 1467 --HKLDRMKDEFISIVSHELRTPLTAIRGSLGILESGVLNDEPLTANRMLKVALNNSERL 1524

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              LVNDILDL  +++G  +L      ++DL+ +  +S+    +  +IRI   +       
Sbjct: 1525 ARLVNDILDLERLESGKTELVMKPCQVSDLMEQAVESVEAIANLASIRINFTA--VEAQV 1582

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----------------IFSVK 724
             AD   ++Q    +L N + FS  GS + LKA R NG++                +FS++
Sbjct: 1583 WADFDAIVQTLINLLGNGIKFSDPGSMIWLKAQRSNGEWGLQKSENFPHLGSSYLLFSIE 1642

Query: 725  NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  IP D  +S+F RF         Q+ G GLGL+I +S I  H G + + S     +
Sbjct: 1643 DQGRGIPSDKLESIFGRFQQVDVSDSRQKGGTGLGLAICKSIIEQHNGKIWVESVVGQGS 1702

Query: 783  TINCRIPS 790
                 +P 
Sbjct: 1703 IFYFTLPL 1710



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 65/436 (14%), Positives = 150/436 (34%), Gaps = 55/436 (12%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR----DQAGDILWANISYKKNT 226
            +  + S+++E     + L      F+ L  +   +++      D      + + ++++  
Sbjct: 684  VTAVTSDISERKQTEEALQKSEFRFQQLASASPGVIYTVVEYPDGPVRYEYVSPAFEEIH 743

Query: 227  ETE-GIVFQKAIGESRKLFKEEI---KKRMISSSALEKNFC-ETVSTLEHGNNKSYKIV- 280
            E     + + A     ++  +++   ++ ++ S    + F  E       G  K  +   
Sbjct: 744  EVPLTEILKDASITINQMHPDDLSGYQQAVVESLKEMQPFRHEWRIITPSGQVKWIQAHS 803

Query: 281  ----RVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAI--AIFDQNR--YL 328
                R        G+ +D++++  V  QL  T + L    ++    I   + + +     
Sbjct: 804  RPERRENGEIAWHGVVLDITEKKQVEAQLRKTEQWLCQFNYHAPSVIYTIVQEADGLIRF 863

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            ++ + +   + E+         + +++LE      +L    +  T+ E +    +S E  
Sbjct: 864  EYISSACEAINEL---------TAEQVLENAHVLLELIHPDDRATYGEAVAKSAESLELF 914

Query: 389  KDTWHL--PNGQTLHVIVTSNPR----GGTIW--MFENLTVQVDLETKYNTLVKVQGETI 440
               W +  P+G+   +   S P     G   W  +  ++T +  +E +            
Sbjct: 915  DHQWRIITPSGKVKWLQGKSQPERRSNGAIAWYGVVIDITERKQIEARLQEQEIFLRSIY 974

Query: 441  DHLSEGVAVFG----PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            + + E + V       D R    NPA +       + +   T                  
Sbjct: 975  EGVEEPIFVIDVDENEDFRFVSLNPAHQRAVGFSLSEIYGKTPQEAQVPAWEAI--TQHY 1032

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRA 551
             D  AA  T    E   L G      ++    ++ PL N      + + T + +T+  R 
Sbjct: 1033 RDCLAARTTISYQENVFLHG-----RETSWYTTLTPLCNLEGRIFRIIGTALEITELKRT 1087

Query: 552  ERALTEKNEALRKADE 567
            ERAL +  + +    E
Sbjct: 1088 ERALKQALQQIDAHFE 1103


>gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1450

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 116/680 (17%), Positives = 243/680 (35%), Gaps = 69/680 (10%)

Query: 164 AFLR-ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW----HRDQAGDILWA 218
            ++  +     + +  AE     + L       + + D+L   V       D      + 
Sbjct: 261 VWVWSLRRAVTVRT--AEYARAERALREREWQLRSVGDNLPNGVVFQYEVMDGCPRFRYI 318

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-----EHGN 273
           +   ++             G    L    + K    + A         S L       G 
Sbjct: 319 SAGVERTLGYRPEQMTHDAGPLFALMSPAVLKEYTKAEAKSAETLSDFSGLLPFDLPDGR 378

Query: 274 NKSYKIVRVLNSFGEA-----GIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQ 324
            +   +        E      G+A+DV+ +     +L         +      AI +  +
Sbjct: 379 QRWLLVHSRPRRTAEGAVIWDGVALDVTDQREAEARLIESEQRFRRLFEQSKQAITLI-E 437

Query: 325 NRYLQFHNRSFVELWEID--LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           +      N++ +++  ++    FL   PS+    E+        E+       + +  V 
Sbjct: 438 DGCFVDANQAALDMLRLESREQFLGLKPSDISP-EYQPDGRLSAEKA------QELLHVA 490

Query: 383 KSSETHKDTWH--LPNGQTL--HVIVTSNPRG---GTIWMFENLTVQVDLE-------TK 428
           + S + +  W     +G+     V++T    G       +++++T +   E        +
Sbjct: 491 RESGSSRFEWEHVRADGEHFFADVLLTPMVFGECQQIHVVWQDITEKKHAEAELARYQRE 550

Query: 429 YNTLVKVQGETIDHLSEGVA----VFGPDGRIKLSN--PAFRSLWKTEENRLSPGTHIRN 482
             +LV+ +   + H +E +A         G     N       L+  +E     G     
Sbjct: 551 LESLVEQRTSELRHSNERLAHTQFAMDRVGIGISWNSVDTGHFLYVNDELCRQLGYTYEE 610

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY---SIIPLPNAQTM 539
           + +      N          +        + L+            Y   + I L  A   
Sbjct: 611 LLSLTVSDVNHEYPPAAVRQVADELRGSSRCLRLETRHWRKDGSTYPVSTTIYLHQAPGE 670

Query: 540 LTFVNVTDSVRA----ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             F+   + + A    E  L    E   +A + K++F+ ++S+E+R+P+  IIG   L  
Sbjct: 671 EWFIAFFEDITARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRTPMNAIIGMAHLAL 730

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    L+++Q  Y+E +  S+  LL ++NDILD + ++AG + +      L D+++ + 
Sbjct: 731 QT---PLDARQRDYIEKVHRSAEALLGILNDILDFSKIEAGRLDIEQIDFRLEDVMDNLA 787

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KA 712
             +  K  +  + +      ++ +  + D  RL QI + + +NA+ F+  G  +++  + 
Sbjct: 788 NLVGLKAEDKGLELMFDLPPEVPTALIGDALRLGQILTNLGNNAVKFTEPGGEILIGVRV 847

Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
             +  D++   F V++ G  +  + C  +F  F        RR  G GLGL+I +    L
Sbjct: 848 EAEGADWVCLGFEVRDTGIGMTPEQCGRLFESFSQADMSTTRRYGGTGLGLAICKYLTEL 907

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG + + S     T     
Sbjct: 908 MGGEIGVESEPGAGTCFRFS 927


>gi|303247235|ref|ZP_07333509.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491394|gb|EFL51282.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1136

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 110/520 (21%), Positives = 201/520 (38%), Gaps = 31/520 (5%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               E G A+DV    ++ +++  T E++  +   +     +      N+++  +     
Sbjct: 339 GELSELGRALDV-MAASLRERIRFTQELIDAIPAPVFYKSLDGRYLGCNKTYETMVHPLA 397

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDT-WHLPNGQTLH 401
           + L       +  E  R      E  + +   E   S+ ++     +D  WH        
Sbjct: 398 SILGKTSRAVQAPEIARQC----EDTDREALTEPQRSIQFEMRARLRDGAWHDQLVTKSS 453

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
               S    G I + +++T     E   +         +  + +G  V G D RI  SNP
Sbjct: 454 FENASGVTAGIIGVMQDITTLRHSEMALSDSEAKYRTLLASMRDGFVVIGKDNRIMESNP 513

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-----FDDERKSLQG 516
           AFR +       L+  T +          +   +   L  A+ T      F+ E +   G
Sbjct: 514 AFREMLGYSREELNGLTTLD----ITPERWQAPEEAVLRTAVDTQGFSGIFEKEYRRKDG 569

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           ++   +  +  Y        +      +VT+    E  L    EA   A+  K+ F+  +
Sbjct: 570 SVFPAALRLQRYPSRGDDARRYFAIVRDVTEDKAIEADLRAAKEAAETANRAKSDFLAKM 629

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+++R+PL  +IG T+L   +    L+ +Q   +E    S+  LL L+NDILD++ ++A 
Sbjct: 630 SHDIRTPLNAVIGMTELTLDT---PLSHQQRDALETARESAASLLALINDILDISRIEAR 686

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKIL 695
            ++L      L   L  + +S+  +  +  +R+ +    +   FV  D  RL QI   ++
Sbjct: 687 KLELASDVFDLRRTLAGITRSMRAQAKDKGLRLALAIAPRTPRFVTGDPVRLRQILLNLV 746

Query: 696 SNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            N + F+ +GS V L    D G           F+V + G  I  +  + +F+ F     
Sbjct: 747 GNGIKFTDQGS-VSLIVGPDTGQAKPDGATAIAFTVSDTGIGIESERLEGIFDMFAQADA 805

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
               Q  G GLGL+I      L GG +   S     +   
Sbjct: 806 SITRQYGGTGLGLAICRELARLMGGCIVAESRPGAGSRFR 845



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 91/290 (31%), Gaps = 33/290 (11%)

Query: 173 GIYSELAE-TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           G  SEL     +    L   I   + L D++   V+++   G  L  N +Y+        
Sbjct: 339 GELSELGRALDVMAASLRERIRFTQELIDAIPAPVFYKSLDGRYLGCNKTYETMVHPLAS 398

Query: 232 VF---QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-- 286
           +     +A+       + E   R   +        E  + L  G    +  +   +SF  
Sbjct: 399 ILGKTSRAVQAPEIARQCEDTDREALTEPQRSIQFEMRARLRDGA--WHDQLVTKSSFEN 456

Query: 287 ------GEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                 G  G+  D++     E+ ++D       +L ++     +  ++  +   N +F 
Sbjct: 457 ASGVTAGIIGVMQDITTLRHSEMALSDSEAKYRTLLASMRDGFVVIGKDNRIMESNPAFR 516

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           E+       L    + D   E  ++    PE+   +T  +        S   +  +   +
Sbjct: 517 EMLGYSREELNGLTTLDITPERWQA----PEEAVLRTAVDTQGF----SGIFEKEYRRKD 568

Query: 397 GQTLH--VIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGET 439
           G      + +   P  G        +  ++T    +E       +     
Sbjct: 569 GSVFPAALRLQRYPSRGDDARRYFAIVRDVTEDKAIEADLRAAKEAAETA 618


>gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
 gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
          Length = 580

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 21/367 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++ +            I+++  G+ +    G I L N  FR  +K +++           
Sbjct: 230 EMTSAGEMQRDRLQTVIENIGAGIILIDKMGYIHLVNRTFRKQFKVQKHIYMH------- 282

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                + Y+E+   +    +I         ++  L L  D  +E     +     + T  
Sbjct: 283 -----KLYHEAFTHEEIIELIDEIFMTETKVRKFLRLAVD--IERRYFQVDGVPILSTDD 335

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                V     +TE      + ++++  FV +VS+EL++P+T+I GF++ L    +    
Sbjct: 336 EWKGIVLVFHDVTETK----QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAIDD-K 390

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              ++++  I   S  L  L+ D+LDL+ ++    KLN       ++L E++  +  K  
Sbjct: 391 EALTEFLSIILKESVRLETLIQDLLDLSKIEQQQFKLNIQEANATEILQEIQVLLNQKAT 450

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I++ V    +    +AD  RL QIF  +++NA+ ++ +G +V + A    G + F V
Sbjct: 451 EKGIQLHVRVPKEPVYVMADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDV 510

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  + +     +F RF            G GLGL+IV+  +  H G +S+ S     
Sbjct: 511 ADTGIGMKKSEIPRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKG 570

Query: 782 TTINCRI 788
           TT    +
Sbjct: 571 TTFTVSL 577


>gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1340

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 167/385 (43%), Gaps = 14/385 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +  NL +Q   E K    +++  + +D +   +     D      N +F S +   E 
Sbjct: 445 VQLTRNLELQKKTELKVVEQLELNRQILDAIPNPMYYRNVDSEYIGVNESFTSFFGLFEA 504

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   T      A  ++ + +S+   L    I S D E + +          V E +   
Sbjct: 505 DIIGSTPKDIFEAETAQQFEDSEAKLL--ENIGSLDYEARLVNADGIQRDVMVYEATFFS 562

Query: 533 LPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                   +   ++VT+  + E  L +  EA  +  + K  F+ ++S+E+R+P+  IIG 
Sbjct: 563 TKGDPNGVVGLLLDVTERKQMEVELRKAKEAADEVSKAKGDFLANMSHEIRTPMNAIIGM 622

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + L        LN KQ  YV  I  ++  LL ++NDILD + ++AG +        L+++
Sbjct: 623 SHLALN---ADLNPKQRGYVSKIDMAAKSLLGIINDILDFSKMEAGKLVTEDVDFRLDEV 679

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ +   IA K  E  +      D  +  + V D  R+ Q+   +  NA+ F+  G  V+
Sbjct: 680 LDNLTNIIAVKAEEKGLEFLFDIDPHIPLALVGDPLRIGQVLINLCGNAIKFTDSGEVVV 739

Query: 710 ----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
               L  + D  +  F+V+++G  + ++    +F  F         +  G GLGL+I + 
Sbjct: 740 GVKLLNKSEDGLNLQFNVRDSGIGLSQEQQDKLFKSFSQADASITRKYGGTGLGLTISKR 799

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            + + GG + ++S +   +T +  +
Sbjct: 800 LVEIMGGKIWVTSDEGQGSTFSFTL 824



 Score = 41.5 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 61/167 (36%), Gaps = 16/167 (9%)

Query: 165 FLRILSLDGIYSELAETTLKCK-KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
            +  L++    +   E   K + K+   + + + + D++   +++R+   + +  N S+ 
Sbjct: 437 VIDDLAIGVQLTRNLELQKKTELKVVEQLELNRQILDAIPNPMYYRNVDSEYIGVNESF- 495

Query: 224 KNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSY 277
             T   G+     IG   + +F+ E  ++   S A           E       G  +  
Sbjct: 496 --TSFFGLFEADIIGSTPKDIFEAETAQQFEDSEAKLLENIGSLDYEARLVNADGIQRDV 553

Query: 278 KIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
            +          +  G  G+ +DV++   +  +L    E    ++ A
Sbjct: 554 MVYEATFFSTKGDPNGVVGLLLDVTERKQMEVELRKAKEAADEVSKA 600


>gi|153869805|ref|ZP_01999330.1| sensor histidine kinase FexB [Beggiatoa sp. PS]
 gi|152073733|gb|EDN70674.1| sensor histidine kinase FexB [Beggiatoa sp. PS]
          Length = 681

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/542 (18%), Positives = 207/542 (38%), Gaps = 51/542 (9%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             + ID+++       L  + E         +  +   +      +++  F ++      
Sbjct: 52  QSVGIDITERKLAEKALRKSEERFELAMRGASDGLWDINYETEKAYYSPRFKQMLGFSE- 110

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
               + + D+++ ++   +     LN K + E     ++    H        G  + V+ 
Sbjct: 111 --HESMTPDDIIHWVHPDDFDKVLLNSKAYVEKKIPKFQ----HTFRLRHKKGHYIWVLS 164

Query: 405 TS----NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            +    N +G     +    +LT+Q  +E K     +     ID + + +     + R  
Sbjct: 165 RAIAVWNEQGQPLRMVGTNMDLTIQKQIEEKLRQQQEFLRLVIDSIPQFIFWKDRNSRYL 224

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N  F  +      +        ++  T  +     +         T      +++Q  
Sbjct: 225 GCNQNFAQIANVNTPKQIIDKTDFDLPWTAEQITYYRNVDRRVMEGDTPEYHIIETIQ-- 282

Query: 518 LELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           L       L+ + IPL N Q      + +F ++T+  +AE  L +  +    A+  K+ F
Sbjct: 283 LADGQQRWLDTNKIPLHNVQGQVIGILGSFEDITERKQAEVQLQKALQTAETANHTKSVF 342

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+ELR+PL  ++G+T + +     +LN +Q + ++ I  +   LL L+NDILD++ 
Sbjct: 343 LANMSHELRTPLNAVLGYTQIFQQD--DTLNKQQREGIDIIHRNGEYLLTLINDILDISK 400

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           V+AG ++     + L+  L  + Q    +  +  I         L   + AD +RL QIF
Sbjct: 401 VEAGQLEFYPKDMKLSQFLQGIVQLFQMRTQQKKIEFSYKPLSALPEIIHADEKRLRQIF 460

Query: 692 SKILSNAMDFSSKGSTV-------------------ILKAARDNGDFIFSVKNNGSSIPE 732
             +LSNA+ F+ KGS                      L          F +++ G  I  
Sbjct: 461 INLLSNAIKFTDKGSVTFTVKTEQAKIKNEPSWVKNTLSTFYSYSRLHFQIEDTGIGIAS 520

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--I 788
                +F  F         +  G GLGLSI ++ +++  G + + S     +       +
Sbjct: 521 HELDKIFLPFQQADKNHYNKPMGTGLGLSITKNLVDMMDGSIHVESLLGKGSIFWVEFDL 580

Query: 789 PS 790
           P+
Sbjct: 581 PT 582



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 18/158 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           L + G   +L       +KL       +++ DS+   ++ +D+    L  N ++ +    
Sbjct: 177 LRMVGTNMDLTIQKQIEEKLRQQQEFLRLVIDSIPQFIFWKDRNSRYLGCNQNFAQIANV 236

Query: 229 EGIVFQKAIGESRKLFK---------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
                ++ I ++                + +R++     E +  ET+  L  G  +    
Sbjct: 237 N--TPKQIIDKTDFDLPWTAEQITYYRNVDRRVMEGDTPEYHIIETIQ-LADGQQRWLDT 293

Query: 280 VRVLNS------FGEAGIAIDVSKEITVNDQLTHTYEI 311
            ++          G  G   D+++      QL    + 
Sbjct: 294 NKIPLHNVQGQVIGILGSFEDITERKQAEVQLQKALQT 331


>gi|167840906|ref|ZP_02467590.1| sensory box histidine kinase/response regulator [Burkholderia
           thailandensis MSMB43]
          Length = 765

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 105/504 (20%), Positives = 196/504 (38%), Gaps = 35/504 (6%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
           +   +L +LT  + + D+   + + N +   L   D   +   P       +     ++ 
Sbjct: 128 YYEALLQSLTQGVVVSDRRGVITYMNPAAATLIGCDATAVRGLPFRGVFRAYDGHGARV- 186

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENL 419
                 T  + +     S+          +GQ + +   ++P         G + +  ++
Sbjct: 187 ----RATALDRVLRSGASATVDGHWLMPHDGQRVPIAEVASPLVDAAGGMTGAVLIVRDV 242

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +V      +     ++    ++   + +   G + RI   NPA   ++  +E        
Sbjct: 243 SVD----RERVAASQMLRRLVEASPDAIVGVGANRRITSWNPAACRMFGYDEQAALGRDV 298

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFD-----DERKSLQGTLELL-----SDSVLEYS 529
              IA    R +            I + D      +   L+ TL         D+ +  S
Sbjct: 299 AMLIAPRWLRRHPLPASVPGVREPIENVDVLCMRQDGSRLRATLSASPVLDDRDACVALS 358

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +                 S+R  R   +       ++ +K+  +  VS+ELR+PL  I G
Sbjct: 359 LTLRDTGGQRRRERRAHRSLRGAR---DARRQADTSNRLKDELLATVSHELRTPLNVIYG 415

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           + ++L+    G+L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + L  
Sbjct: 416 WIEVLRNPVDGAL---QQQAIDAIDRSARSLARMVGDILDASSLATGKLRLDAMPVDLVR 472

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++N+V  ++ T    + I + V           D +RL Q+ S +LSNA  F+ +G  V 
Sbjct: 473 IVNDVTGALGTAAQADGIELAVECALDTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVT 532

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINL 767
           +   R       +V + G  I  +    VF  F     A    RRG+GLGLSIV   + L
Sbjct: 533 VSLERTGSQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASSRRGLGLGLSIVRHIVEL 592

Query: 768 HGGHVSISSSD-EGVTTINCRIPS 790
           HGG V  +S+     TT    +P+
Sbjct: 593 HGGKVGAASAGKNRGTTFAVTLPA 616



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 24/226 (10%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            L  SL   V   D+ G I + N +       +    +           +    R + ++
Sbjct: 131 ALLQSLTQGVVVSDRRGVITYMNPAAATLIGCDATAVRGLPFRGVFRAYDGHGAR-VRAT 189

Query: 257 ALEKNFCETVSTLEHG------NNKSYKIVRVLNSFGEAGI----AIDVSKEITVNDQLT 306
           AL++      S    G      + +   I  V +   +A      A+ + ++++V+ +  
Sbjct: 190 ALDRVLRSGASATVDGHWLMPHDGQRVPIAEVASPLVDAAGGMTGAVLIVRDVSVDRERV 249

Query: 307 HTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
              ++L  L      AI     NR +   N +   ++  D            +       
Sbjct: 250 AASQMLRRLVEASPDAIVGVGANRRITSWNPAACRMFGYDEQAALGRDVAMLIAPRWLRR 309

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           + LP          ++  V +  E         +G  L   ++++P
Sbjct: 310 HPLP---------ASVPGVREPIENVDVLCMRQDGSRLRATLSASP 346



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 67/264 (25%), Gaps = 42/264 (15%)

Query: 23  KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL 82
           ++A F  +   +   +           +L        +           Y +LL      
Sbjct: 90  QLATFVIVNCAICAIV----------AALKGSRRMNEALRRREALARRYYEALLQSLTQG 139

Query: 83  TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKF---HHYIKLSKATEKLRKEGQ 139
            +V D +     +       I    T    L F    +    H     + A +++ + G 
Sbjct: 140 VVVSDRRGVITYMNPAAATLIGCDATAVRGLPFRGVFRAYDGHGARVRATALDRVLRSGA 199

Query: 140 S-------------FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           S               +         +   G ++G+   +R +S+D              
Sbjct: 200 SATVDGHWLMPHDGQRVPIAEVASPLVDAAGGMTGAVLIVRDVSVDRER----------- 248

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
                  + + L ++    +        I   N +        G   Q A+G    +   
Sbjct: 249 --VAASQMLRRLVEASPDAIVGVGANRRITSWNPA---ACRMFGYDEQAALGRDVAMLIA 303

Query: 247 EIKKRMISSSALEKNFCETVSTLE 270
               R     A      E +  ++
Sbjct: 304 PRWLRRHPLPASVPGVREPIENVD 327


>gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 1132

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 129/260 (49%), Gaps = 8/260 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +T  ++T+  R E++L        KA + K+ F+  +S+E+R+P+  I+G  +LLK +
Sbjct: 723 MYVTTQDITELRRVEQSLITTKNEALKASQAKSEFLAQMSHEIRTPMNAIMGMAELLKET 782

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+  Q  YV     +  +L++L+NDILDL+ ++AG + +      +  L+ +V+  
Sbjct: 783 R---LDVDQKYYVTIFCKAGEVLMSLINDILDLSKIEAGEVSIENIPFDMKKLMADVEDM 839

Query: 658 IATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--R 714
           +  +  E  +  I  I+ G     + D  +L Q+   ++ N++ F++KG   ++      
Sbjct: 840 MKPRALEKGLNCICEIAPGVSPHLMGDPTKLRQVLINLIGNSIKFTNKGQVRLVIGKNPS 899

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
                + S+ + G  IPED    +F +F    +    +  G GLGL+I +S + L GG +
Sbjct: 900 KKDTLLISITDTGIGIPEDRQHMIFQKFSQADNSVTRKYGGTGLGLAISKSLVELMGGQI 959

Query: 773 SISSSDEGVTTINCRIPSKE 792
              S     TT    IP +E
Sbjct: 960 WFKSRPGTGTTFFFTIPYRE 979


>gi|297545596|ref|YP_003677898.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843371|gb|ADH61887.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 568

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 92/408 (22%), Positives = 168/408 (41%), Gaps = 54/408 (13%)

Query: 394 LPNGQT-LHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGE------TIDHLSE 445
           + +G   + + + SN   G +  MF  L++++       TL  +QGE       I  +++
Sbjct: 205 MADGDFDVRIRIKSNDEIGKLGEMFNFLSLRLK-----QTLNGIQGEKNKIEAIIRFMTD 259

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV      GRI   N A   +       L  G  I  I          +           
Sbjct: 260 GVVATDAKGRIIHFNEAAEKMLNAN---LELGMPIEGILNLKKEDVVATMNC-------- 308

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                            + VL  +I PL   Q +  +V V   +  +  L          
Sbjct: 309 ----------------GNKVLTVNIAPLKGNQQIEGYVYVLHDITEQHKL---------- 342

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D ++  FV +VS+ELR+P+  I  + + L  S + +  SK  ++++ I + +  +  LV 
Sbjct: 343 DTMRKEFVANVSHELRTPIATIKSYVETLLYSDVDAEYSK--KFLKIIDSETDRMTRLVK 400

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+L L+ +D+    L +    LND++ E    ++ +  + N ++ V           DR 
Sbjct: 401 DLLLLSKMDSEDNNLKFEQKNLNDIVVEAINRLSIEAQKKNQKLIVDLQETPRYVYIDRD 460

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           ++ Q+   +++NA+ ++ +   + +    D       V++NG  IP++    +F RF   
Sbjct: 461 KMEQVIVNLVTNAIKYTPENGMIKIMTEYDESFASLIVEDNGIGIPKEDLPRIFERFYRV 520

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                R   G GLGLSIV+  + LH G V+I S     T +  ++P +
Sbjct: 521 DKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLPYQ 568


>gi|256828852|ref|YP_003157580.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578028|gb|ACU89164.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 862

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 204/515 (39%), Gaps = 52/515 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +N+       +  + ++ + + D +  + + N +        L         DEL+  
Sbjct: 214 EKLNESEYLFRTLTEHSSMGVLLLD-DGRVLYANPAVEAATGYGL---------DELMGM 263

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRGGTI 413
           +      PE       +    SV ++    +      +G    V           R   +
Sbjct: 264 MIREIVDPEHRGVVD-QSTPGSVGQAIGRSEFRIRRKDGTVRWVEYVPALVEFQGRKVVL 322

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPA--------- 462
               ++T ++ +        +      +  S+   V    P+GR+ L   A         
Sbjct: 323 GACADITDRMLVRQARQENEERYRVLFETASDAMYVVGLDPEGRLDLFRDANVQGCAALG 382

Query: 463 --FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                L +     ++    +++      R    SDG  ++ A   S D     ++ + +L
Sbjct: 383 YSLEELLRLGPRDMTHLYELKHAGELQRRL--RSDGCAVYDARHVSRDGRFFPVEVSAKL 440

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            S                +    ++++   AE  L    +    A++ K+ F+ ++S+E+
Sbjct: 441 FSHE---------GKQAVLCIARDISERKEAELRLEAAKKQAEVANQAKSEFLANMSHEI 491

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  ++G   L++   +G L++++SQY++    S   LL ++NDILDL+ +++G  +L
Sbjct: 492 RTPLNGLLGMLQLVR---MGDLDAERSQYLDVAMNSGEGLLAVINDILDLSKIESGKFEL 548

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
                 ++ L+  V ++         + + V +D  +  F+ AD+ R+ QI   ++ NA+
Sbjct: 549 APVDFNVHALVQSVGETFRFPARSKGVELIVETDADMPVFIHADQVRIRQILYNLVGNAV 608

Query: 700 DFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
            F+  G  + +  +      + G     V + G  IP D   ++F  FV  +   + R  
Sbjct: 609 KFTLAGE-IRISLSMPFQTGNRGQMEIRVADTGVGIPLDQQAALFEPFVQASTAPKTRGS 667

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           G GLGLSIV+  +   GG V + S+    TT+   
Sbjct: 668 GTGLGLSIVKRIVGFMGGRVRLDSTPGEGTTLTVS 702



 Score = 60.7 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 96/297 (32%), Gaps = 40/297 (13%)

Query: 181 TTLKCKKLSNHIS----VFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGI 231
             L+   L   ++    +F+ L +     V   D  G +L+AN + +  T     E  G+
Sbjct: 205 LQLRNDALMEKLNESEYLFRTLTEHSSMGVLLLD-DGRVLYANPAVEAATGYGLDELMGM 263

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG---- 287
           + ++ +    +   ++     +  +     F         G  +  + V  L  F     
Sbjct: 264 MIREIVDPEHRGVVDQSTPGSVGQAIGRSEFRIRRK---DGTVRWVEYVPALVEFQGRKV 320

Query: 288 EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVA--IAIFDQNRYLQFHNRSFVE---- 337
             G   D++  + V        E    +    + A  +   D    L     + V+    
Sbjct: 321 VLGACADITDRMLVRQARQENEERYRVLFETASDAMYVVGLDPEGRLDLFRDANVQGCAA 380

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           L       L   P +   L  L+ A +L      +  + +  +VY +    +D    P  
Sbjct: 381 LGYSLEELLRLGPRDMTHLYELKHAGEL-----QRRLRSDGCAVYDARHVSRDGRFFPVE 435

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT-------LVKVQGETIDHLSEGV 447
            +  +      +   + +  +++ + + E +            + + E + ++S  +
Sbjct: 436 VSAKLFSHEGKQ-AVLCIARDISERKEAELRLEAAKKQAEVANQAKSEFLANMSHEI 491


>gi|284990063|ref|YP_003408617.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284063308|gb|ADB74246.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 634

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 103/504 (20%), Positives = 198/504 (39%), Gaps = 37/504 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             ++D+      ++  +   + + D+    +  N     L+ +           D LL  
Sbjct: 146 AELHDREHRLQRLVDAVPEGVFLVDEAGAARATNAVAERLFGLPH---GRRVPLDTLLPG 202

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RGGTI 413
           L   +        +  + +   V ++  T +      +G    + V+ +P         +
Sbjct: 203 LSPDS----PPFARRRRGDRTGVTRAEVTGRS----ADGHRFPLEVSVSPLEDAGDDRWL 254

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  +L+ + D E +     ++    +    +G+      G +  +NPA   +    E+ 
Sbjct: 255 VLARDLSPREDAEAELRRQERLTSMILASAGDGIVGSDHAGVVVFANPAATRILGCRESD 314

Query: 474 LSPGTHIRNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEY 528
           L  G  +  +A       +    D      AI  S   +   +   L    D     +E 
Sbjct: 315 LV-GKSLHAVAHHTRPDGSPFPQDECPTHRAITES---QFVVVHTDLFWRRDGRPVPIEM 370

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+ P+ +   +   V     +              + + +K+ F+  VS+ELR+PLT+I 
Sbjct: 371 SVAPIVSGDEVHGAVTTFRDISQR----------TEVERLKDEFISVVSHELRTPLTSIK 420

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL    +G + + Q   ++    ++  L  LV+DILDL  ++AG M L       +
Sbjct: 421 GSLSLLTNGVMGPVPAAQQPLLDMARRNAERLGELVDDILDLDRLEAGRMPLRPVETDAD 480

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
           +L  +V  S+        + + V   G   + V  D  R+ Q+ + ++ NA+ FSS G  
Sbjct: 481 ELAAQVVGSLQPAAAVAGVELSVKPCGGGATVVRVDPHRMNQVLTNLVGNAIKFSSPGCP 540

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFIN 766
           V +  +R   +   +V++ G  IPED   +VF RF       G R G GLGL I    ++
Sbjct: 541 VTVSVSRAGDEVCLAVRDRGPGIPEDQHAAVFERFRQVHEPGGARTGTGLGLPIARGIVD 600

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
             GG + ++S     +T    +P+
Sbjct: 601 RSGGRIELTSEPGKGSTFTVVLPA 624



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 81/316 (25%), Gaps = 36/316 (11%)

Query: 144 VAETQNDCAIKIEGRVSGSCAFL--RILSLDGIYS--------------ELAETTLKCKK 187
                    +   G   G+   L      L                             +
Sbjct: 88  HVRFYAGEPLSAGGTPVGTLCVLDTEPRELSDDQRALLAELAAWAEAELNNTALNHLVAE 147

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQKAIGESRKLFK 245
           L +     + L D++   V+  D+AG     N   ++         V    +        
Sbjct: 148 LHDREHRLQRLVDAVPEGVFLVDEAGAARATNAVAERLFGLPHGRRVPLDTLLPGLSP-D 206

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG----EAGIAIDVS----K 297
                R            E       G+    ++               +A D+S     
Sbjct: 207 SPPFARRRRGDRTGVTRAEVTGRSADGHRFPLEVSVSPLEDAGDDRWLVLARDLSPREDA 266

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  +  Q   T  IL +    I   D    + F N +   +     + L    S   +  
Sbjct: 267 EAELRRQERLTSMILASAGDGIVGSDHAGVVVFANPAATRILGCRESDLVGK-SLHAVAH 325

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------G 411
             R       Q    T +    S +     H D +   +G+ + + ++  P        G
Sbjct: 326 HTRPDGSPFPQDECPTHRAITESQF--VVVHTDLFWRRDGRPVPIEMSVAPIVSGDEVHG 383

Query: 412 TIWMFENLTVQVDLET 427
            +  F +++ + ++E 
Sbjct: 384 AVTTFRDISQRTEVER 399


>gi|224538200|ref|ZP_03678739.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520195|gb|EEF89300.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 928

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 125/657 (19%), Positives = 252/657 (38%), Gaps = 52/657 (7%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGDILWANISY 222
              SL  I +      L   +     +    L+  +      L    D+ G+       Y
Sbjct: 288 WFSSLADIINICISLRLARDEADRERNFLSNLYKYMPMGYVRLSILCDEEGE------PY 341

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---- 278
                          G   + +K      + SS  L           +HG  +       
Sbjct: 342 DYLITDANQFSADLCGSPLERYKGRFASEIYSSDKLSTKLRILADIHKHGLYRELDEYFE 401

Query: 279 --------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNR 326
                   I+          + +DV++       L H+ ++L NL     V + I++++ 
Sbjct: 402 ESKRTCHCIIYSPEPDELVCLYMDVTEMRRTYMALDHSEKLLRNLFSNIPVGVEIYNKDG 461

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDE---LLEFLRSANKLPEQLNWKTWKE--NIFSV 381
            L   N   +E++ +         +  E   +   +R   K+ ++L++    E  N+   
Sbjct: 462 ILIDLNNKDMEIFGVKDKSSTIGVNFYENPNVPSDIRERVKVEDELDFSQDYEFSNVSDY 521

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y+S +      +    +       +N   G + +  + T ++    +            +
Sbjct: 522 YESEKRGGIELYTKISKIYDKQGDNN---GFVLINIDNTERISSINRIRDFENFFLLISE 578

Query: 442 HLSEGVA---VFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +   G A   +   +G  IK     ++++ + E+  L     I N      R    +   
Sbjct: 579 YAKVGYAKLNLLTRNGYAIKQW---YKNMGEDEDTPLVEVVGIYNKMHPQDRVRVLAFFE 635

Query: 498 DLFAAIITSFDDERKSL-QGTLELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAE 552
                  TSF  E + L  GTL+  +   +   +          + +    ++T+    E
Sbjct: 636 KAKRGEATSFKSEMRVLKSGTLDQWNWVRMNVVLNRYDPENGLIELIGVNYDITELKETE 695

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L E  E   +AD +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +Y + 
Sbjct: 696 QKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVETEDQG---EKREYSKM 752

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++ +LL L++DILDL+ ++AG        + +N L  +V++S+  ++    + +   
Sbjct: 753 VEENNELLLQLISDILDLSKIEAGTFDFKIRDLDVNTLCGDVQRSMKLRVKP-GVELLFE 811

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                   V+D  RL Q+ +  ++NA+ F++ G   I     D       V + G  I  
Sbjct: 812 PTLPSCVIVSDPNRLHQVVANFVNNAIKFTTTGYIRIGYDQPDAKHLRIYVSDTGIGIAP 871

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + C+ +F+RF+      Q  G GLGLSI +S I   GG + + S     +T    +P
Sbjct: 872 EACEKIFDRFIKLNSFVQ--GTGLGLSISKSIIEQLGGTIGVDSELGKGSTFWFILP 926


>gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula
           baltica WH47]
          Length = 843

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 107/500 (21%), Positives = 191/500 (38%), Gaps = 47/500 (9%)

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
            +    F N S+++   +    LA     D     +    +  +Q   +T  E++ SV  
Sbjct: 29  ADGRRVFANDSYLKWRGVTWQELAGKHDEDLFPPEIARKYREDDQKVMQTG-ESLHSVES 87

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIW----MFENLTVQVDLETKYNTLVKVQGET 439
           +            G    V    +   G +     +F ++T +V+ E        +    
Sbjct: 88  AKLADDSI-----GWIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTL 142

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           + ++ + +     D R    + A    +         G    +I    +  + E    D 
Sbjct: 143 LANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADI---FTPEHAEGARLDE 199

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERA 554
              I T      +  + T     D+    + +PL N       T     ++TD  R+E A
Sbjct: 200 LRVIETGEALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAA 259

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E       A+  K+ F+ ++S+E+R+P+  +IG  DLL  +K   L+  Q  YV+ I 
Sbjct: 260 LHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTK---LDPDQQDYVQIIQ 316

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL L+NDILD + ++A  ++L      L   +    +S + K  E  + ++    
Sbjct: 317 ESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDIS 376

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------------------- 712
            +L    + D  R+ Q+ + ++ NA+ F+  G   +                        
Sbjct: 377 PELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERADRDLAATHSGRES 436

Query: 713 -ARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
             RD+  +   SV ++G  IP     +V N F        RR  G GLGLSI    + L 
Sbjct: 437 PERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTGLGLSISRQLVELM 496

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + + S     TT + ++
Sbjct: 497 GGELHLQSEVGVGTTFSFQL 516



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 29/253 (11%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETV 266
            +   G  ++AN SY K     G+ +Q+  G     LF  EI ++            E++
Sbjct: 26  IKAADGRRVFANDSYLK---WRGVTWQELAGKHDEDLFPPEIARKYREDDQKVMQTGESL 82

Query: 267 STLEH---GNNKSYKIVRVLNSF--------GEAGIAIDVS----KEITVNDQLTHTYEI 311
            ++E     ++    I RV  +         G   +  DV+    +E     + +    +
Sbjct: 83  HSVESAKLADDSIGWIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTL 142

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           L N+  +I   D +      + +    +    +  +      D          +L E   
Sbjct: 143 LANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRV 202

Query: 371 WKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF---ENLTVQVDLE 426
            +T +  +  V + +    +DTW +     L      N  G  I  F    ++T     E
Sbjct: 203 IETGEALVDRVERETWPDREDTWCMTTKMPLR-----NDTGEIIGTFGISRDITDLKRSE 257

Query: 427 TKYNTLVKVQGET 439
              +  V++    
Sbjct: 258 AALHEAVRMADAA 270


>gi|189467535|ref|ZP_03016320.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
 gi|189435799|gb|EDV04784.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
          Length = 652

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 109/504 (21%), Positives = 217/504 (43%), Gaps = 28/504 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + ++L     +L    +A+   + N       + + E   +D   +    + +E   F
Sbjct: 29  ELLKEKLLKVNSVLAAHQIALWEINVNTLECTFTQEYFESLGLDKVGICYQ-NLEEFCSF 87

Query: 359 LRSANK-----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVIVTSNPRGGT 412
           +   +K        Q     ++E+     +    H +   L +   ++    + NP+   
Sbjct: 88  VHPDDKHLVSLDGFQKKLDGFEESKVLRVRCVGAHGEIVWLEDHLLSVEKDRSGNPKSLL 147

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            +   N+T Q + ET+ + + +   + I  L E + +F  +         F        +
Sbjct: 148 CYTV-NVTGQCERETRISRMEERNRKIIQALPEFIFIFDEN---------FFLTDVLMSS 197

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLS--DSVLEY 528
                  +  +     R     +  DLF   I     D E K ++  L++        + 
Sbjct: 198 DTILLHPVEQLRGADGRTIYSPEVSDLFLRNIRQCLEDGELKEIEYPLDVDDCERHYFQA 257

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            I P  + + M    ++ D V+    L E  +   +AD +K+ F+ ++S+E+R+PL  I+
Sbjct: 258 RIAPFEDNKVMALIHDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIV 317

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF++++    L     ++++Y+  I  +S +LL L+NDILDL+ +++G  ++N+  + + 
Sbjct: 318 GFSEIIA---LTEDEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMT 374

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L++EV++    KM +  IR+ VI   +    + DR R+ Q+    LSNA+  + +G T+
Sbjct: 375 GLIDEVEKVHRLKM-KTGIRLNVICPDEEIWIMVDRNRITQVLFNFLSNAIKNTHEG-TI 432

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            L            V + G  I ++    +FNRF       Q  G GLGL I +S +   
Sbjct: 433 TLGLEVCGEWLKVYVTDTGCGIAKEKLPLIFNRFEKLNDFVQ--GTGLGLPICQSIVERL 490

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG +S+ S     +T    +P ++
Sbjct: 491 GGKISVESEVGVGSTFVMTLPYRQ 514


>gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42]
 gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42]
          Length = 593

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q++      N   +     +  +++GV     DG I ++NP
Sbjct: 221 ILTQDEIGELAIAFNQMGRQLNFHINALNQEKEQLSNILSSMADGVITINIDGTILVTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +      +            +  +LF   + +  ++ + ++ TL+  
Sbjct: 281 PAERFLQAWYYEQNMNIKEGDNLP--------PEAKELFQNAVNT--EKEQMIEMTLQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S  +L   + PL     +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 SWVLL---MSPLYAESHVRGAVAVLRDMTEERRL----------DKLREDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +    + S   ++ +  + I   S  +  LVND+LDLA +++G   L+
Sbjct: 378 TPISMLQGYSEAIVDD-IASTEEEKKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLH 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y T+ L++ L ++ +  +    E  + +           V D  ++ Q+F+ ++ NA+  
Sbjct: 437 YETVNLHEFLEKISRKFSGVAKEKGVSLTEDISVSQPECVFDEDKMEQVFTNLIDNALRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +  G +V + A          +K++GS IPE+    +F RF        R   G GLGL+
Sbjct: 497 TESGGSVHIAAQIVKDGLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV++ +  HGG +++ SS +  TT    IP+K
Sbjct: 557 IVKNIVEAHGGSIAVHSSIDKGTTFTFYIPTK 588


>gi|312887628|ref|ZP_07747221.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311299894|gb|EFQ76970.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 822

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 157/394 (39%), Gaps = 28/394 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE----E 471
             ++   +  +     L       ++   +G+      G+    N     +        E
Sbjct: 144 LRDVICLMQTQYDIEELSTRFNAIMETTPQGIVFVDDSGKGAWVNKQASQILGVNNDKNE 203

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                    R  +A  ++   + +G  LF++   S  D R      + L    VL  S  
Sbjct: 204 PLAISMAMTRLRSAAINQEEIQREGMKLFSSPNQSLLDWRWIFGDPVSL----VLSVSCT 259

Query: 532 PLPNAQTMLTFVNVTDSV----------RAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           P+ +          TD                 L EK +   + ++ K++F+ ++S+E+R
Sbjct: 260 PVVSENIRGRLWAFTDITSLHITNSQLSELNIELDEKRKIADEQNQAKSAFLANMSHEIR 319

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  +IG T LL ++   SL  +Q  YVE I  S   LL+L+NDILD + +++G M+L 
Sbjct: 320 TPMNGVIGMTSLLIST---SLTDEQQDYVETIRISGETLLSLINDILDFSKIESGKMELE 376

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                L  ++ E    +  K  E  + +  + D  +    + D  RL QI   ++SN + 
Sbjct: 377 TQPFSLTSVIEETYDLLTVKADEKGLDLLYLIDADVPSEIIGDVTRLRQILVNLVSNGIK 436

Query: 701 FSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           F+ KG   + ++     G      FSVK++G  IP+D    +F  F        R   G 
Sbjct: 437 FTEKGEILISIELLEKAGSIYTLQFSVKDSGIGIPQDKFHRLFQSFSQVDSSTTRKHGGT 496

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL+I +  +    G +   S     +     I
Sbjct: 497 GLGLAISQRLVEAMQGSIRAESKYGEGSCFIFTI 530


>gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 885

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 168/386 (43%), Gaps = 39/386 (10%)

Query: 413 IWMFENLTVQVD-----LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + ++   T Q       LE +   + +     +  + +GV V    GRI+L NPA   L 
Sbjct: 514 VQLYRATTEQARRLSQALEQREEEVSRSL-AIVRSIGDGVVVGDRVGRIRLINPAAEQLL 572

Query: 468 KTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
             E      G  + ++  A        E   +  F                    LS  +
Sbjct: 573 NIEAAEWL-GKPLMSLPGAPESEPRLTEKQTYQQFE-------------------LSGRM 612

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +  S  P+  +Q+      V         L          D +K  FV   S+ELR+PLT
Sbjct: 613 IRASSTPVFTSQSEWLGSVVVYHDITASELA---------DRMKTEFVATASHELRTPLT 663

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I G+ DLL  + LG L  +Q Q++  +  +   L  ++ND+LD++ +++G ++L    I
Sbjct: 664 SISGYIDLLMLNTLGPLTEQQRQFLSVVKNNIERLNAILNDLLDVSRIESGKVRLQRKPI 723

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L++L+     SI  +     I + +     L   +AD +R+ QI + ++SNA  ++  G
Sbjct: 724 NLDELIQSTVMSIHQQWSGKQISLALDVPDDLPPMIADPERMRQIVTNLISNAYKYTRDG 783

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
             + +  +        +VK++G  I  D  K +F RF  + +  + Q  G GLGL+I +S
Sbjct: 784 GRIDVVVSNGGDSVTLAVKDSGVGIAADDQKHIFTRFFRSENPLKEQAGGTGLGLNITKS 843

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG +   S +   TT N ++P
Sbjct: 844 LVELHGGKIWFDSEEGRGTTFNVQLP 869



 Score = 38.0 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                  ++++ +  I+ ++   + + D+   ++  N +  +L  I+ A     P     
Sbjct: 529 QALEQREEEVSRSLAIVRSIGDGVVVGDRVGRIRLINPAAEQLLNIEAAEWLGKP----- 583

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              L S    PE     T K+       S    +         +  V  + +   G++ +
Sbjct: 584 ---LMSLPGAPESEPRLTEKQTYQQFELSGRMIRA-------SSTPVFTSQSEWLGSVVV 633

Query: 416 FENLTV 421
           + ++T 
Sbjct: 634 YHDITA 639


>gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum
           gilvum SL003B-26A1]
 gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum
           gilvum SL003B-26A1]
          Length = 787

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 115/586 (19%), Positives = 223/586 (38%), Gaps = 53/586 (9%)

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
           +  M++    EK            N   +     +            ++    ++    T
Sbjct: 197 RLGMVAVMQPEKEIFADWRGNVSANVTLFVGTSTVLLVLVYAFFSQATRAEQADEIYAAT 256

Query: 309 YEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
              +          +  +D  R   F + S  +L       L   P +D L     +   
Sbjct: 257 RTRIDTALTHGRCGLFDWDLARGRIFWSASLYDL-------LGREPKDDILGFAEIADLT 309

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-------NPRGGTIWMFE 417
            P+ ++     E +    +++          +G  + +                 I +  
Sbjct: 310 HPDDIDLYRLAETLLETGQTTVDRMFRMRHADGSWVWLRARGEVQTDPGRAEPHLIGICI 369

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q +L  +  T      + I+ +SE   ++  D  + + N  ++SL    E  + PG
Sbjct: 370 DVTEQHELAEQSRTADLRLRDAIETISEAFVLWNADNELVICNSNYQSLHNLPEQAVRPG 429

Query: 478 THIRNIAATCS-------RYYNESDGWDLFAAIITSFDD-------ERKSLQG------- 516
                + A            +  + G    A+     DD       ER++  G       
Sbjct: 430 APYAEVMAAARNSHITTSPLHGGTPGAGANASYEAQLDDGRWLQISERRTKDGGFVSVGT 489

Query: 517 ---TLELLSDSVLE------YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
              TL+   + +L+       ++  L  ++  L          AE+   ++      A+ 
Sbjct: 490 DITTLKRHEERLLDSERRLMATVSDLRKSRQTLEMQAQQLVELAEKY-AQEKTNAENANR 548

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVND 626
            K+ F+ ++S+ELR+PL  IIGF+D++     G + + + ++Y   I  S T LLN++ND
Sbjct: 549 AKSEFLANISHELRTPLNAIIGFSDIMDRGMFGPIGSERYAEYCRDIHESGTYLLNVIND 608

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ ++AG M++    + +  ++ E  + I     E  I +    +  L +  ADR+ 
Sbjct: 609 ILDMSKIEAGRMEMTVKPLGVEAVVEEAGRIIRAPAQEKAIEVTCEVEPGL-AVAADRRA 667

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   +LSN + F+ +  TV L   R  G   F + + G  I +     +   FV   
Sbjct: 668 LKQVLLNLLSNGVKFTPEKGTVRLSVHRAGGLARFEIADTGIGIRKADVDRLAQPFVQVE 727

Query: 747 H--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +      +G GLGL+I  S + L GG ++I+S     T +   +P 
Sbjct: 728 NQFTKTHKGSGLGLAIARSLVELQGGTLTIASVPGQGTRVAFTLPL 773


>gi|307309665|ref|ZP_07589317.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|307319462|ref|ZP_07598889.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306894834|gb|EFN25593.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306899877|gb|EFN30500.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 775

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/524 (23%), Positives = 219/524 (41%), Gaps = 50/524 (9%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL- 365
                L      +  FD +    F +RS  E+  +             +L F  +A  + 
Sbjct: 262 RVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGD--------ASVLSFGDAARLMH 313

Query: 366 -PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH------VIVTSNPRGGTIWMFEN 418
             ++  ++  +       +  +      H  +G  +       VI T + R   I +  +
Sbjct: 314 VEDRGIYRVARAIAKGNERQIDQVFRMRH-ADGHYVWLRARAQVIRTVSGRTHLIGIAMD 372

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T Q  L  +Y    +   + I+  SE   ++    R+ + N  ++  W+  ++ L PGT
Sbjct: 373 VTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGT 432

Query: 479 HIRNIAATCSRYYNESDGWD------------LFAAIITSFDDERKSLQGTLE------- 519
               + A  +R   E    D              A       +ER++  G L        
Sbjct: 433 ERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDIT 492

Query: 520 ---------LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                      S+  L  +I  L +A  +       +   A      + E    A+  K+
Sbjct: 493 LLKRHQVRLRESERRLMATIGDL-SASRVTLEQQKAELSIANANYQAEKERAEAANRAKS 551

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILD 629
            F+ ++S+ELR+PL  I+GF+++L+    G L + K  +Y   I  S   LLN++NDILD
Sbjct: 552 EFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILD 611

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ ++AG M++    I L  L+ E  +         NIR+       L +  ADR+ + Q
Sbjct: 612 MSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGL-TMFADRRAMKQ 670

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           +   +LSNA+ F+++G  + L+A +  G    ++ ++G  IP+   + +   F  V + +
Sbjct: 671 VLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQY 730

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              + G GLGL+I  S   LHGG + I S++   T I+ RIP +
Sbjct: 731 AKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDR 774



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 105/310 (33%), Gaps = 30/310 (9%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +    +  A+       L    ++ +         +W  D     L+ + S  +    +G
Sbjct: 244 IQAKRTRDADAVFAESNLRVETALSRGRCG-----LWDFDLDNRRLFWSRSMYEMLGMQG 298

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-----EHGNNKSYK-----IV 280
                + G++ +L   E +     + A+ K     +  +       G+    +     I 
Sbjct: 299 DASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIR 358

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFV 336
            V       GIA+DV+++  +  +     + L +     + A  ++D++  L   N  + 
Sbjct: 359 TVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQ 418

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           + W++    L   P  +  +    +A  + E          I    +S+ +      L +
Sbjct: 419 QAWQLPDHVLV--PGTERTIVHAAAARPVVE--------RRIADPDRSNHSQTSEVQLAD 468

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GR 455
            + L +       GG + +  ++T+    + +     +    TI  LS            
Sbjct: 469 ERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAE 528

Query: 456 IKLSNPAFRS 465
           + ++N  +++
Sbjct: 529 LSIANANYQA 538


>gi|254444992|ref|ZP_05058468.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198259300|gb|EDY83608.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 777

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 93/504 (18%), Positives = 196/504 (38%), Gaps = 23/504 (4%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +  ++ +  T   ++       I I D    +   N +     E +   L        L
Sbjct: 132 ERTQSLLESETKYRDVFEGALFMIHILDTEGNILNVNPAMCNTLEFEKGELLGI----SL 187

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGT 412
           LE +   ++   ++N++  +     + +S + ++      +G+ +HV   +NP    G  
Sbjct: 188 LEIVSEEDREIAEVNFERAR-----LGESVKEYEVKLISKSGKLVHVRAAANPIVQDGKV 242

Query: 413 IWMFENL---TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           + +  NL   T +   E +      +    +D++ + +     + R    +    +L+  
Sbjct: 243 VSIQGNLIDETKRKTAEAELADERVLMRTLMDNIPDSIYFKDLESRFLQVSRFQSNLFGY 302

Query: 470 EENRLSPGTHIRNI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           E      G    +I       + + +          I   +++ K L G  + +S + + 
Sbjct: 303 ERPEELCGLSDFDIFQGDMARKKFEDEQSIIRTGTPIIDKEEKEKFLNGEAQYVSTTKMP 362

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
              +      T     ++T+  R E+ L+   E   +A  +K+ F+  +S+ELR+P+  I
Sbjct: 363 LRSVSGEVIGTFGVSRDITNRKRLEQNLSFALERALEASRLKSEFIATMSHELRTPMNGI 422

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  D+L    L  L+  Q    + I      L+++++DILD + ++    +L    + +
Sbjct: 423 LGMADILL---LTELSESQKDSAKLIKKCGQNLMSIISDILDFSKIETRNFQLEVEPLEI 479

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++NE       K     I ++   D      F  D +R+ Q+ + ++ NA+ F+ +G 
Sbjct: 480 QLIVNETLAFFRPKAESKGISLRCEIDEHCSDIFYGDSKRIRQVLTNLVGNAIKFTEEGY 539

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
             +       G     V++ G  I E     VF  F     +   +  G GLGL+I +  
Sbjct: 540 VRVRADFLGEGRMRIEVEDTGVGIDEVFQSKVFQAFTQEDGSDSRRYGGTGLGLAITKQL 599

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           + L GG +   S     +     I
Sbjct: 600 VELMGGLIDFDSQVGVGSRFWFEI 623


>gi|239905744|ref|YP_002952483.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795608|dbj|BAH74597.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 721

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 112/524 (21%), Positives = 201/524 (38%), Gaps = 47/524 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLA--TN 349
           ++ +   L     + H   V   + D++  +Q  N +F+++        +   F      
Sbjct: 60  QVELALALERFSILFHKAPVGYVVLDKDAMIQEVNHTFLDMIGWTGRKPVGRPFFEYIAE 119

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           P+    +   R+  K PE    +T  +    V K           P G     +    P 
Sbjct: 120 PARPVFVARYRALFKSPEGKKVETVLDVHGGVDKPVLLEACVHEQPAG-----LEKPGPA 174

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
                   +++ +   E       +    T+D LS  +A+    G I   N A+R+    
Sbjct: 175 PQLFLAVSDISARRKAEEALMESERFARGTLDGLSAHIAIVDEAGNILAVNSAWRAFAAD 234

Query: 470 EENRLSPGTHIRNIAATCS-RYYNESDGWDLFAAIITSFDDERKSLQGTLELLS------ 522
                   +   N    C     +E+D     A  I      R+ L G L   S      
Sbjct: 235 ASCTPGAVSEGANYFRACQGAIGDEADTAGRIARAI------REVLAGRLPFFSLEYPCH 288

Query: 523 ----DSVLEYSIIPLPN---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                   +  +   P    A+ ++   NVT+ V+A  AL    EA   A   K+ F+ +
Sbjct: 289 SPTEKRWFQVRVTRFPGDGPARAVVAHENVTERVQATAALASAKEAAEAAARAKSEFLAN 348

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  ++G   LLK   L   + +++ +++    SS  LL L+N+ILD++ ++A
Sbjct: 349 MSHEIRTPLNGVMGMLQLLK---LTGCDEERNDFIKLAYDSSERLLQLLNNILDISRIEA 405

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G   +        +LL E            N+ +   +D  L      D  ++ Q+   +
Sbjct: 406 GRTVMVQEPFSPLELLQEPVLLFQGMAKAKNVTMAFSADDGLPEQVTGDVPKIRQVLFNL 465

Query: 695 LSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           + NA+ F+ +   V L  A        D    + +V + G  I  ++   +F  F     
Sbjct: 466 VGNAVKFT-QNGQVRLAVAYAGSPASSDKATLVVTVADTGKGISAELLPELFQPFTQGDS 524

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               Q  G GLGLSIV+  + L GG + + S +   TT++  +P
Sbjct: 525 SFKKQYAGTGLGLSIVKRLVCLMGGALCLESVEGEGTTVHLSVP 568



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 106/329 (32%), Gaps = 43/329 (13%)

Query: 130 ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA--ETTLKCKK 187
           A + LR+  +   L A      ++  E     + A +  L +  I  EL   E      +
Sbjct: 8   AAQGLRERAE-QLLQAHGVAGRSLSPE----ENQAVIHELQVHQIELELQNEELQRSQVE 62

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKE 246
           L+  +  F +LF          D+   I   N ++       G   +K +G    +   E
Sbjct: 63  LALALERFSILFHKAPVGYVVLDKDAMIQEVNHTFLDMI---GWTGRKPVGRPFFEYIAE 119

Query: 247 EIKKRMISS-----SALEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAG---I 291
             +   ++       + E    ETV  +  G +K        ++    L   G A    +
Sbjct: 120 PARPVFVARYRALFKSPEGKKVETVLDVHGGVDKPVLLEACVHEQPAGLEKPGPAPQLFL 179

Query: 292 AI-DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           A+ D+S      + L  +       L  L+  IAI D+   +   N ++   +  D +  
Sbjct: 180 AVSDISARRKAEEALMESERFARGTLDGLSAHIAIVDEAGNILAVNSAWRA-FAADASCT 238

Query: 347 ATNPSNDELLEFLRS-ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-----NGQTL 400
               S      + R+    + ++ +             +      +   P       +  
Sbjct: 239 PGAVSEGA--NYFRACQGAIGDEADTAGRIARAIREVLAGRLPFFSLEYPCHSPTEKRWF 296

Query: 401 HVIVTSNPRGG---TIWMFENLTVQVDLE 426
            V VT  P  G    +   EN+T +V   
Sbjct: 297 QVRVTRFPGDGPARAVVAHENVTERVQAT 325



 Score = 37.6 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 77/284 (27%), Gaps = 33/284 (11%)

Query: 51  LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDT 110
           L  +  E      E+   L ++  L  +     +V D      E+       I       
Sbjct: 49  LELQNEELQRSQVELALALERFSILFHKAPVGYVVLDKDAMIQEVNHTFLDMIGWTGRKP 108

Query: 111 DLLSFENWLKFHHYIKLSKATEKLRKEGQSFD----LVAETQNDCAIK----IEGRVSG- 161
               F  ++              L K  +       L      D  +     +  + +G 
Sbjct: 109 VGRPFFEYIAEPARPVFVARYRALFKSPEGKKVETVLDVHGGVDKPVLLEACVHEQPAGL 168

Query: 162 ---SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
                A    L++     +++      + L       +   D L   +   D+AG+IL  
Sbjct: 169 EKPGPAPQLFLAVS----DISARRKAEEALMESERFARGTLDGLSAHIAIVDEAGNILAV 224

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG------ 272
           N +++            A+ E    F+         +    +        L         
Sbjct: 225 NSAWRAFAADASCTPG-AVSEGANYFRACQGAIGDEADTAGRIARAIREVLAGRLPFFSL 283

Query: 273 --------NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
                     + +++ RV    G+ G A  V     V +++  T
Sbjct: 284 EYPCHSPTEKRWFQV-RVTRFPGD-GPARAVVAHENVTERVQAT 325


>gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 628

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/490 (20%), Positives = 190/490 (38%), Gaps = 45/490 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVEL--WEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           N +  + I  QN  + + + +F +L  + ++ A        D         + +P   + 
Sbjct: 27  NASDGVHILTQNGDVVYCSTTFADLLGYSLEEAHELNVKDWD---RHFPVEDMIPVIKD- 82

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGGTIWMF---ENLTVQVDLE 426
                    + ++ +  +      NG+  +V + +      G  +++    ++T      
Sbjct: 83  ---------LIENPKIFETKHEKKNGEIFNVEINARGIELDGDFFLYASSRDITGVKKEA 133

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                             +   V    GRI+  N     L+   E  L  GT+I      
Sbjct: 134 MVNRKNHAKLQSIFRTTPDAFFVIDSSGRIESVNDKLIKLFGLSEKELL-GTNIDKYLKV 192

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                      D+   +  + + E  S  G +  +S +V E                +++
Sbjct: 193 -----------DVTKLVGETEELEFTSKDGRVVPISINVGEART--EDGLYLTGIIRDIS 239

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  + +R L +       A++ K+ F+ ++S+E+R+P+  I+G   LLK +   SLN  Q
Sbjct: 240 EQKKYQRELEDSRNKALAAEKAKSLFLANMSHEIRTPMNGILGMASLLKDT---SLNPLQ 296

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  I++    LL ++NDIL  + +++G + +   +  L   + +V   IA    E  
Sbjct: 297 EEMLSIINSCGDSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVEDVTSLIANIASEKG 356

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720
           I I    D  +  F+ +D  RL QI + +LSNA+ FS     V L       +      +
Sbjct: 357 ITIHSKIDNSIPQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDIKLTGCNGNIVKVL 416

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           FSVK+NG  + E+    +F  F         +  G GLGLSI      L GG + + S  
Sbjct: 417 FSVKDNGIGMSEEEQSRLFQEFTQADEGVTRKFGGTGLGLSISSKLAKLLGGKIKVESRK 476

Query: 779 EGVTTINCRI 788
              +  +  +
Sbjct: 477 GEGSKFSFEL 486


>gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 589

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/395 (25%), Positives = 178/395 (45%), Gaps = 25/395 (6%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGR 455
           G+ + VI T +  G    +   +  Q++      +  K + +TI   + EG+ V    G 
Sbjct: 214 GRRIPVI-TRDEVGELARVMNEMASQIERNLARISAEKNRLDTILRGMGEGLMVSDAGGT 272

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           + L NPAF  L+   ++    G  I  IA          +  + F A+++S  +  + + 
Sbjct: 273 VTLVNPAFLDLFGLTQSV--EGRQIIEIARF-------PELHETFRAVVSSRSEHVEEM- 322

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
            TL L  +  +    +PL             D +R   A+      L++ + ++  FV +
Sbjct: 323 -TLPLGDEKQVLTHWVPL----------MEEDELRGVVAVFHDISDLKRLEVVRRDFVAN 371

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+P+T I G+ + L    +     +  +++E I + S  L +L+ D+L L+ +++
Sbjct: 372 VSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSERLADLIRDLLTLSQLES 431

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++L  + I L+  ++     +  K     I I + +       +AD  RL Q+   ++
Sbjct: 432 GGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAIDISALAGAPPVLADPGRLEQVLINLM 491

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRG 753
            NA+ ++  G T+ L A   +G    SV + G  IP      +F RF     A      G
Sbjct: 492 DNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLPRIFERFYRVDAARSRDEGG 551

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGLSIV+  I LHGG++++ S     TT    +
Sbjct: 552 TGLGLSIVKHIIQLHGGNITVESEHGKGTTFRFTL 586



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 21/138 (15%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             ++ +      IL  +   + + D    +   N +F++L+ +  +              
Sbjct: 244 ARISAEKNRLDTILRGMGEGLMVSDAGGTVTLVNPAFLDLFGLTQS-------------- 289

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP------RGGT 412
                ++ E   +    E   +V  S   H +   LP G    V+    P        G 
Sbjct: 290 -VEGRQIIEIARFPELHETFRAVVSSRSEHVEEMTLPLGDEKQVLTHWVPLMEEDELRGV 348

Query: 413 IWMFENLTVQVDLETKYN 430
           + +F +++    LE    
Sbjct: 349 VAVFHDISDLKRLEVVRR 366


>gi|307822954|ref|ZP_07653184.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307735729|gb|EFO06576.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 1247

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/710 (16%), Positives = 251/710 (35%), Gaps = 104/710 (14%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLD--FLVWHRDQAGDILWANISYKKNTE--TEGIVF 233
           LA   L  + +    +  + L D+L+   LV   D  G I++AN  + + +      +  
Sbjct: 71  LAIRPLVLQIVQEQTTSNRELLDALENHVLVSIADVQGRIVYANDMFCEVSGYTRNELTG 130

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETV-STLEHGNNKSYKIVRVLN------SF 286
           Q     +     ++  + M ++ A  + +     +  + G                    
Sbjct: 131 QDHRVVNSGHHDQDYIRNMWNTIAGGQVWRGEFCNRRKDGELYWVDSTIAPLLDKTGKPK 190

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
               I  D +K      +LT     L   +  + I D   ++Q+ N +           L
Sbjct: 191 QYISIRRDTTKRKANELKLTSLKRALDASSEMVLITDAEGHIQYANPALCLFTGWAEDAL 250

Query: 347 A--------------------------TNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
                                      + P +  L    R+       ++  +  E   S
Sbjct: 251 MGQKPYVLDSSTADRQALSDMQSRLRCSEPWSGRLRGRRRAHVSGLHPVDNVSVLEREES 310

Query: 381 VYK-SSETHKDTWHLPNGQTLHVIVTSNP-RGGTIWMFENLTVQVDLETKYN-------- 430
             + S +  +DT        +  I+T+N    G + +  +++ QV+ E            
Sbjct: 311 DSRNSGQAVEDTLEYWAKTNITPILTANGTLSGYVQIQHDVSKQVEEEAALQIESDDTAA 370

Query: 431 ------------TLVKVQGETIDHLSEGVAVFGPDGR----IKLSNPAFRSLWKTEENRL 474
                       TL +   + ++ L  G+  F    +    +++ +  +   +       
Sbjct: 371 RLAISEVLHQPLTLEQRFVQVLNILF-GLKSFDLQRKGCVFLRVRDDEYLEKFVAHGKLD 429

Query: 475 SPGTHIRNIAATC-----SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +    I      C     SR +  +D  D        +     S +  L +L    +   
Sbjct: 430 NMEQRIDFGDGLCGQVAVSRKFTVADNCDCDHQPHGHYIVPIASGEDILGVL---FVFTD 486

Query: 530 IIPLPNAQTMLTFVNVTDSV-------RAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             P+ N   +     V + +       +A  +L    +A  +    K  F+ ++S+E+R+
Sbjct: 487 AYPVQNESRIAMLKEVGEMMALALLQNQANASLEAARDAALQVAHTKTEFLANMSHEIRT 546

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  ++G  DLL+ ++   L+ +Q   ++  + S+  LL ++NDILD + ++AG ++L  
Sbjct: 547 PMNGVLGMLDLLQDTQ---LSREQWDLIDIAANSAESLLTIINDILDFSKLEAGKIELEQ 603

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
               L DL+ EV   ++++ H   + +       L   +  D  R+ Q+ + ++ NA+ F
Sbjct: 604 IEFNLPDLVEEVCTLLSSRAHSKGLELNCFLPTDLPLRWQGDPTRIRQVLTNLIGNAVKF 663

Query: 702 SSKGST-VILKAARDNGD------------------FIFSVKNNGSSIPEDMCKSVFNRF 742
           + +G   V ++ ++ +                      F V + G  I  +    +F  F
Sbjct: 664 TEQGEVSVTVRVSKKDDTDAASAPGRFAADTPSLTILRFEVVDTGIGITAEAQARLFQAF 723

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                   RR  G GLGLSI +  + L  G++ + S+          +P 
Sbjct: 724 SQADSSTSRRYGGTGLGLSISKDLVMLMNGNIGVESALGQGANFWFTLPL 773


>gi|300777936|ref|ZP_07087794.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910]
 gi|300503446|gb|EFK34586.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910]
          Length = 1302

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 128/645 (19%), Positives = 269/645 (41%), Gaps = 55/645 (8%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIV 232
           + +   +  KL +    F+  F++   L+   D  G+I+  N   ++       E E + 
Sbjct: 273 ITQRIEEKLKLESSERRFRSFFENAIGLMSMHDMEGNIIAVNEKGRETLQYSAEEVEDLN 332

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY---KIVRVLNSF--G 287
            +  + E      E+  +R+  +    ++F   +   + G+   +    +V +       
Sbjct: 333 LKDLVPEKNWHLLEQYLERINKNR---EDFGTMILKTKGGDEVIWMYHNLVEINKEGKPY 389

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-----NRYLQFHNRSFVELWEID 342
               A++V++ +T+   L +T ++L   + A+A                ++S  E+ +ID
Sbjct: 390 VVSTALNVTERVTLEKDLVNTKKMLEQTS-AVAQVGGWEVNLKNNTVIWSQSTREIHKID 448

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTL 400
             F    P  +  L F    ++       +  +       K    + +   L   +G  +
Sbjct: 449 KTF---QPDLENALGFYSENSR-------EKLESLFERAVKEGIPYDEELQLVRNDGVMI 498

Query: 401 HVIVTSNPR--GGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            V V   P   GG       + +++     +  +      +    + ++   VA+   D 
Sbjct: 499 WVRVKGIPEFEGGVCTRVYGIIQDIDNFKKVYLELARKEAMLQSFVAYVPATVAMLDKDL 558

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
                + +++  ++  + RL       N+        +E       A    ++ +E  ++
Sbjct: 559 NYLSVSKSWKDEFQMNDIRLIG----ENMFKISPDVPDERIKIYRDALAGKAYKNEDMAI 614

Query: 515 Q----GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           +     +++  +  V  + +        ++   N+T SV+  + L    +    A + K+
Sbjct: 615 EIPGKESIQHYNVEVTPWYLSSNVIGGIIVAAQNITTSVKINKELKNAKKMADIASQAKS 674

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+PL  +IGF+DLL  +    LN  Q+QY+ YI+ S   LL+++NDILD 
Sbjct: 675 EFLANMSHEIRTPLNGVIGFSDLLLKT---PLNEIQTQYLNYINESGENLLSIINDILDF 731

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + +++G M+L+     + D++++V   I  +  + NI + +  +  L  +   D  RL Q
Sbjct: 732 SKIESGKMELSIEKANVYDIVSQVINVILYQSQKKNIELLLNIEPGLPETIWLDESRLKQ 791

Query: 690 IFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
           I   +L NA+ F+ +G        L     N    FSV++ G  IP++  K +FN F   
Sbjct: 792 ILINLLGNAVKFTQEGEIELKVEKLSIESKNITLRFSVRDTGIGIPKEKQKHIFNAFTQE 851

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++   +  G GLGL+I  + +N  G  +S+ S     +T    I
Sbjct: 852 NSSISKKYGGTGLGLTISNNILNYMGSSLSLVSELHQGSTFYFDI 896



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 121/372 (32%), Gaps = 39/372 (10%)

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
           D+   +   +I+          +  +   ++  +    I+         ++ F      +
Sbjct: 71  DRKNTVCQYSIASGDIVVINDTLLDERSSDNPLILAGGIRFYAGVPLLDDEGFALGTLCV 130

Query: 270 EHGNNKSY--KIVRVLNSFGEAGIAIDVSKEITVNDQ-LTHTYEILHNLTVAIAIFDQNR 326
                K+     +  L   GEA   + + K   +  +    T+ I +NL   I + D+N 
Sbjct: 131 IDYKPKTITEDQISTLKKIGEAVTKLLMGKRKNIQAEYFQQTFSISNNL---ICVLDKNF 187

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV----Y 382
            L+  N +F   ++++ + +      D +         L    +     E I        
Sbjct: 188 LLKDINPAFENAFQVNKSQVINQNFLDLVGSHNSQLQLL--SKDLPNTDEEITFTTSTNI 245

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             ++T    W+L        +  S+       +  N+T +++ + K  +  +      ++
Sbjct: 246 NDNQTIIVEWYLK-------LNQSHSDIFCFGI--NITQRIEEKLKLESSERRFRSFFEN 296

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
               +++   +G I   N   R   +              +     +       W L   
Sbjct: 297 AIGLMSMHDMEGNIIAVNEKGRETLQYSA---------EEVEDLNLKDLVPEKNWHLLEQ 347

Query: 503 IITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQ---TMLTFVNVTDSVRAERA 554
            +   +  R+   GT+ L +        + ++++ +        + T +NVT+ V  E+ 
Sbjct: 348 YLERINKNREDF-GTMILKTKGGDEVIWMYHNLVEINKEGKPYVVSTALNVTERVTLEKD 406

Query: 555 LTEKNEALRKAD 566
           L    + L +  
Sbjct: 407 LVNTKKMLEQTS 418


>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1817

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/704 (17%), Positives = 264/704 (37%), Gaps = 115/704 (16%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
            +  ++ E       L      F+   +      W  D  G I++ + +Y++  +   +  
Sbjct: 670  VNRDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVYVSETYRRTFQ---LPT 726

Query: 234  QKAIGES-RKLFKEEIKKRMISSSALEKNFCETVSTLE-----HGNNKSYKIVRVL---- 283
            Q+ IG++   ++  E+ +    +  +     + + T+E      G  + + + +      
Sbjct: 727  QELIGKNIVDIYPPELTQTFRETIQIVARTRQVMETVESAPCSDGTGRDFLVYKFPISSK 786

Query: 284  -NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRYLQFHNRSFVELWE 340
             +      IAID+++       L  + E    +      AI+D N      N +F     
Sbjct: 787  PDECLIGCIAIDITERKQAEAALRKSEERWQLVIEGNQDAIWDWN---IITNETFR---S 840

Query: 341  IDLAFLATNPSNDELLEFLRSANKLPEQLNWK---TWKENIFSVYKSSETHKDTWHLPNG 397
               A L    +   + +     +++    +++     K++  S    +   +      + 
Sbjct: 841  ARWAELIKEQNYQPIADHADCVSRI-HPDDYERVMAVKQDCLSRKIPNYVVEYRLRCNDD 899

Query: 398  QTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLV----------KVQGETI 440
                V+V +  +          +   +++T +++ +      +          +   +++
Sbjct: 900  SYRWVLVHATGQWDEQGNPVRMVGSIKDITERIEAQEALQRQLHRTLLLEKITQKIRQSL 959

Query: 441  DH----------LSEGVAVFGP---DGRIKLSNPA------------FRSLWKTEENRLS 475
            D           + + +AV         I   +P             + S+ K  E   +
Sbjct: 960  DSKEIFETAATQIGQALAV-DRCLIHSYISHHDPHIPLVAEYNNVLDYCSMQK-WEFTTT 1017

Query: 476  PGTHIRNIAATCSRYYNESDGWDLFA----------------AIITSFDDE--------- 510
               HI  + +      + +   D                   A+ TS+  E         
Sbjct: 1018 GNQHILKMMSQDKAIASANVYTDPLLQTAVPSCCEIGVKSMLAVRTSYQGEPSGAICLHQ 1077

Query: 511  ----RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKA 565
                R+     +ELL ++V     I L  AQ +       + +  +  AL +   A   A
Sbjct: 1078 CGYFRQWTNEEIELL-EAVAAQLGIALAQAQLLEQETRQREELTIKNFALEQAKRAAEAA 1136

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            +  K+ F+  +S+E+R+P+  +IG T LL  ++   L S+Q  +VE +  S   LL+++N
Sbjct: 1137 NRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTE---LTSQQRDFVETVLTSGDALLSIIN 1193

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
            DILD + +++G ++L      +   + +V   +A K  + +I +  +   ++      D 
Sbjct: 1194 DILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDL 1253

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG-------DFIFSVKNNGSSIPEDMCK 736
             RL QI + +L+NA+ F+ +G  V+ +++            + IF++K+ G  I  +   
Sbjct: 1254 TRLRQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKNKNCCEIIFTIKDTGIGIAPETMD 1313

Query: 737  SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +F  FV        +  G GLGL I +    + GG++ + S  
Sbjct: 1314 LLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRG 1357



 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/434 (13%), Positives = 138/434 (31%), Gaps = 51/434 (11%)

Query: 171 LDGIYSELAETTLKCKK----LSNHISVFKVLFDSLDFLVWHRDQAGD-ILWANISYKKN 225
           +  I  ELA+   K  +    L    +  + L +++  + W  D       +     +  
Sbjct: 289 IGRINQELADRIEKQTQVEIALRASETRLRELVETVRVIPWEFDLKTQHFTYVGPQVETL 348

Query: 226 TETEGIVFQKAIGESRKL--FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
                  + +       L     +   R    +A +    E    +   + +   +  V+
Sbjct: 349 LAYPVAQWYEENFWDNHLHTLDRDWAVRFCQEAANKGQNHELEYRMLAADGRVVWLRDVV 408

Query: 284 -------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ---NRYLQFHNR 333
                        G   D++    V + L      L   +  I I D    +  + + N 
Sbjct: 409 NVVQVDGTPVMLRGFMFDITDLKRVEETLRLRERALAASSNGIVISDAKLPHYPVIYVNS 468

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW- 392
           +F ++       +             R+   L      ++  E + S  K+ +  K    
Sbjct: 469 AFEQITGYKATEVVG-----------RNCRFLLGNDTQQSAIEELRSALKAGKNCKVILR 517

Query: 393 -HLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +  +G      ++ +P     G +  F  +   +    +    ++ Q  T +++ +GV 
Sbjct: 518 NYRKDGSLFWNQLSVSPIYNDNGQLSHFIGIQTDISDRQQAEASLRRQALTFENIYDGVI 577

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           +    G+I   NPA   ++   +N +  G  I  +        ++ D      + I +  
Sbjct: 578 ITNLQGQILDWNPAAERMFGYSKNHI-CGQSISTL--------HKVDEDAALNSAIIAEI 628

Query: 509 DERKSLQGTLELL----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            ++    G +  +    S  + E +I+ L + Q         +    ER      E L +
Sbjct: 629 TKQGRWSGEINFVRQDGSQGICETTIVALQDDQGQSMATISVNRDITERK---HAELLLR 685

Query: 565 ADEIKNSFVQHVSY 578
             E +  F   +++
Sbjct: 686 RSEER--FQAFMNH 697



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 76/586 (12%), Positives = 179/586 (30%), Gaps = 67/586 (11%)

Query: 22  CKIAVFGTIAGMLLT-TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYH-SLLTEN 79
             +     +AG+     +  +I   +       K+      L++  ++ ++   +L    
Sbjct: 255 SPLPTVVLVAGIFNAGAVTLLIYFAQATKLSNHKIGRINQELADRIEKQTQVEIALRASE 314

Query: 80  NC--------LTIVWDGKDETPEIIGQLHQ-RIDIPQTDTDLLSFENWLKFHHYIKLSKA 130
                       I W+   +T        Q    +            W    H +    A
Sbjct: 315 TRLRELVETVRVIPWEFDLKTQHFTYVGPQVETLLAYPVAQWYEENFWDNHLHTLDRDWA 374

Query: 131 TE---KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
                +   +GQ+ +L         +  +GRV      + ++ +DG    L         
Sbjct: 375 VRFCQEAANKGQNHELEY-----RMLAADGRVVWLRDVVNVVQVDGTPVMLRGFMFDITD 429

Query: 188 LSNHISVFK----VLFDSLDFLVWHRDQAGD---ILWANISYKKNTETEGIVFQKAIGES 240
           L       +     L  S + +V   D       +++ N ++++ T   G    + +G +
Sbjct: 430 LKRVEETLRLRERALAASSNGIV-ISDAKLPHYPVIYVNSAFEQIT---GYKATEVVGRN 485

Query: 241 RKLF-----KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK----IVRVLNSFGE--- 288
            +       ++   + + S+    KN C+ +      +   +     +  + N  G+   
Sbjct: 486 CRFLLGNDTQQSAIEELRSALKAGKN-CKVILRNYRKDGSLFWNQLSVSPIYNDNGQLSH 544

Query: 289 -AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             GI  D+S        L        N+   + I +    +   N +   ++      + 
Sbjct: 545 FIGIQTDISDRQQAEASLRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSKNHIC 604

Query: 348 TN-----PSNDELLEFLRSANKLPEQLNWKTWKENI-FSVYKSSETHKDTWHLPNGQTLH 401
                     DE  +   ++  + E      W   I F     S+   +T          
Sbjct: 605 GQSISTLHKVDE--DAALNSAIIAEITKQGRWSGEINFVRQDGSQGICETT--------- 653

Query: 402 VIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           ++   + +G    TI +  ++T +   E       +     ++H      +   DG I  
Sbjct: 654 IVALQDDQGQSMATISVNRDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVY 713

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            +  +R  ++     L     +       ++ + E+         +    +      GT 
Sbjct: 714 VSETYRRTFQLPTQELIGKNIVDIYPPELTQTFRETIQIVARTRQVMETVESAPCSDGTG 773

Query: 519 ELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALR 563
                 V ++ I   P+   +    +++T+  +AE AL +  E  +
Sbjct: 774 RDF--LVYKFPISSKPDECLIGCIAIDITERKQAEAALRKSEERWQ 817



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 111/352 (31%), Gaps = 51/352 (14%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-- 225
           +    GI +++++       L      F+ ++D     V   +  G IL  N + ++   
Sbjct: 542 LSHFIGIQTDISDRQQAEASLRRQALTFENIYDG----VIITNLQGQILDWNPAAERMFG 597

Query: 226 ----------------TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
                            + +  +    I E  K  +   +   +     +     T+  L
Sbjct: 598 YSKNHICGQSISTLHKVDEDAALNSAIIAEITKQGRWSGEINFVRQDGSQGICETTIVAL 657

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
           +    +S   + V     E   A     E+ +          +++      I D +  + 
Sbjct: 658 QDDQGQSMATISVNRDITERKHA-----ELLLRRSEERFQAFMNHSPTPAWITDIDGTIV 712

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           + + ++   +++    L      D            P +L  +T++E I  V ++ +  +
Sbjct: 713 YVSETYRRTFQLPTQELIGKNIVD----------IYPPELT-QTFRETIQIVARTRQVME 761

Query: 390 DTWHLP--NGQ-----TLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETID 441
                P  +G           ++S P    I  +  ++T +   E       +     I+
Sbjct: 762 TVESAPCSDGTGRDFLVYKFPISSKPDECLIGCIAIDITERKQAEAALRKSEERWQLVIE 821

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
              + +  +       ++N  FRS    E  +      I + A   SR + +
Sbjct: 822 GNQDAIWDWN-----IITNETFRSARWAELIKEQNYQPIADHADCVSRIHPD 868


>gi|15964778|ref|NP_385131.1| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|15073956|emb|CAC45597.1| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
          Length = 772

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/524 (23%), Positives = 219/524 (41%), Gaps = 50/524 (9%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL- 365
                L      +  FD +    F +RS  E+  +             +L F  +A  + 
Sbjct: 259 RVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGD--------ASVLSFGDAARLMH 310

Query: 366 -PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH------VIVTSNPRGGTIWMFEN 418
             ++  ++  +       +  +      H  +G  +       VI T + R   I +  +
Sbjct: 311 VEDRGIYRVARAIAKGNERQIDQVFRMRH-ADGHYVWLRARAQVIRTVSGRTHLIGIAMD 369

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T Q  L  +Y    +   + I+  SE   ++    R+ + N  ++  W+  ++ L PGT
Sbjct: 370 VTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGT 429

Query: 479 HIRNIAATCSRYYNESDGWD------------LFAAIITSFDDERKSLQGTLE------- 519
               + A  +R   E    D              A       +ER++  G L        
Sbjct: 430 ERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDIT 489

Query: 520 ---------LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                      S+  L  +I  L +A  +       +   A      + E    A+  K+
Sbjct: 490 LLKRHQVRLRESERRLMATIGDL-SASRVTLEQQKAELSIANANYQAEKERAEAANRAKS 548

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILD 629
            F+ ++S+ELR+PL  I+GF+++L+    G L + K  +Y   I  S   LLN++NDILD
Sbjct: 549 EFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILD 608

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ ++AG M++    I L  L+ E  +         NIR+       L +  ADR+ + Q
Sbjct: 609 MSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGL-TMFADRRAMKQ 667

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           +   +LSNA+ F+++G  + L+A +  G    ++ ++G  IP+   + +   F  V + +
Sbjct: 668 VLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQY 727

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              + G GLGL+I  S   LHGG + I S++   T I+ RIP +
Sbjct: 728 AKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDR 771



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 105/310 (33%), Gaps = 30/310 (9%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +    +  A+       L    ++ +         +W  D     L+ + S  +    +G
Sbjct: 241 IQAKRTRDADAVFAESNLRVETALSRGRCG-----LWDFDLDNRRLFWSRSMYEMLGMQG 295

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-----EHGNNKSYK-----IV 280
                + G++ +L   E +     + A+ K     +  +       G+    +     I 
Sbjct: 296 DASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIR 355

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFV 336
            V       GIA+DV+++  +  +     + L +     + A  ++D++  L   N  + 
Sbjct: 356 TVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQ 415

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           + W++    L   P  +  +    +A  + E          I    +S+ +      L +
Sbjct: 416 QAWQLPDHVLV--PGTERTIVHAAAARPVVE--------RRIADPDRSNHSQTSEVQLAD 465

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GR 455
            + L +       GG + +  ++T+    + +     +    TI  LS            
Sbjct: 466 ERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAE 525

Query: 456 IKLSNPAFRS 465
           + ++N  +++
Sbjct: 526 LSIANANYQA 535


>gi|37523781|ref|NP_927158.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35214786|dbj|BAC92153.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 686

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/542 (22%), Positives = 203/542 (37%), Gaps = 73/542 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            T+  +L      L   ++ +AI D    + + N  F E+ +   A L            
Sbjct: 13  ATLLKELADIKFALDQSSI-VAITDAAGLIVYVNDKFCEISQYSRAELLGQNH------R 65

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGT-- 412
           + ++   P       W+          E         +G    V  T  P    RG +  
Sbjct: 66  IVNSGFHPSAFFENLWQTIAGGKVWRGEIRN---RAKDGSIYWVDTTIVPFLDHRGHSYQ 122

Query: 413 -IWMFENLTVQVDLETKYN--------------------------TLVKVQGE------- 438
            + +  ++T +  +E                               L + +         
Sbjct: 123 YVSIRNDITERKRVEEALRQAKDELERRVAERTDDLSTANARLHGELAERRRAEKAIELL 182

Query: 439 ------TIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCSRYY 491
                  ++   EG+      GR+   NPA  R L       L    H R      +   
Sbjct: 183 SHQNELILNSAGEGIVGLDLQGRVAFVNPAGARMLGCEVHELLGQPFHERLPGGWTAPPA 242

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVR 550
                  L+A++I +      S+       S   +EY   P L   QT+   +   D   
Sbjct: 243 YRMSDIPLYASLIDASVHRVGSICFGRRDGSSFPVEYVSTPILEQGQTLGAVITFRDITE 302

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +             + +K  FV  VS+ELR+PLT+I G   LL    LG L+ K  + +
Sbjct: 303 RQ-----------AVERLKAEFVSVVSHELRTPLTSIRGALGLLTGGLLGPLSEKGRRML 351

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +   A++  L+ L+NDILD+  +++G + L      L +LL +    + +   +  + + 
Sbjct: 352 DIAIANTDRLVRLINDILDVERMESGKVILVRRRCDLAELLTQSADLMQSMAQQGGVML- 410

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            + + K     AD  RL+Q F+ ++SNA+ FS  GSTV + AA D       V + G  I
Sbjct: 411 -LCESKSAPLWADPDRLIQTFTNLISNAIKFSPAGSTVRVSAACDGPQVQVRVVDQGRGI 469

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  +S+F RF  V  +   ++ G GLGL+I  S +  HGG +   S+    +T    +
Sbjct: 470 PAEKLESIFERFQQVDASDSRKKGGTGLGLAICRSIVLQHGGRLWAESAPGKGSTFVLTL 529

Query: 789 PS 790
           P 
Sbjct: 530 PL 531



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 84/247 (34%), Gaps = 52/247 (21%)

Query: 206 VWH-----RDQAGDILWAN-----------ISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
           VW      R + G I W +            SY+  +    I  +K + E+ +  K+E++
Sbjct: 89  VWRGEIRNRAKDGSIYWVDTTIVPFLDHRGHSYQYVSIRNDITERKRVEEALRQAKDELE 148

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
           +R+   +         +        ++ K + +L+                  ++L    
Sbjct: 149 RRVAERTDDLSTANARLHGELAERRRAEKAIELLSH----------------QNEL---- 188

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
            IL++    I   D    + F N +   +   ++  L   P ++ L     +        
Sbjct: 189 -ILNSAGEGIVGLDLQGRVAFVNPAGARMLGCEVHELLGQPFHERLPGGWTA------PP 241

Query: 370 NWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNP---RG---GTIWMFENLT 420
            ++     +++    +  H+     +   +G +  V   S P   +G   G +  F ++T
Sbjct: 242 AYRMSDIPLYASLIDASVHRVGSICFGRRDGSSFPVEYVSTPILEQGQTLGAVITFRDIT 301

Query: 421 VQVDLET 427
            +  +E 
Sbjct: 302 ERQAVER 308


>gi|119509382|ref|ZP_01628531.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119465996|gb|EAW46884.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 658

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/504 (20%), Positives = 204/504 (40%), Gaps = 21/504 (4%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            +KE+ +   L+     L +  V I   +    +   N+ F+++W+I  + + ++    +
Sbjct: 159 TTKEVELGISLSIFNSTLESTAVGIVAVNFQGDILSLNQKFIDMWQIPESLILSHKC-PQ 217

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---- 410
              F ++  K PE  +    + +    ++S         L +G+T       +  G    
Sbjct: 218 FKAFFQNKLKDPEAFSRLICEISSQCDFES----YYILELKDGRTFAHQSKPHYLGDKIV 273

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G +W   ++T   + E     L + +  T+   +E       + R+   NPA   L   +
Sbjct: 274 GRVWSIWDITQTQETEATLR-LNEARFRTLAETTEANIFLLQNTRLCYINPAVERLTGYK 332

Query: 471 ENRLSPGTHIRNIAATCS----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +  L     +R +  +      R+ N +  ++     +   D   + L   +  L D +L
Sbjct: 333 KEELLNDFDLRRLIKSREHRQVRHQNAAANFEYQEMNLLKKDGTERWLACAVAKL-DGML 391

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           ++   P+     ++T +++TD    E  L +  E  ++  E++  F+  V ++ R+PL  
Sbjct: 392 DFGGKPVE----LITGIDITDYKNVESELNQALEQAKQLSELRARFLAMVCHQFRTPLNI 447

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +     LLK         K    +++I  +   +  +++D L  A  +   +      + 
Sbjct: 448 VSFSNSLLKQQVDKHTEQKIQPLLDHIEKAIEQISQMLDDTLFFAKAETAKINFEPQPLD 507

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L +L + +   +   M +  I         +     D + L  I   +L NA+ +S    
Sbjct: 508 LVNLCDILVAQMHMSMSQKPINFVSQFYCLMACV--DPKLLEPILKNLLENAIKYSPSNM 565

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            V    A +NG  IF VK+ G  IP    + +F  F   ++     G GLGLSI+++ ++
Sbjct: 566 RVDFMLACENGQVIFQVKDKGIGIPYKDQQRLFEPFYRGSNVDNIPGTGLGLSIIKTLVD 625

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           LHGG VS+ S     TT    +P 
Sbjct: 626 LHGGQVSVESEVAVGTTFTVMLPL 649



 Score = 41.1 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 78/235 (33%), Gaps = 25/235 (10%)

Query: 98  QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS---FDL--VAETQNDCA 152
           Q+ + + +        +F     F + +K  +A  +L  E  S   F+   + E ++   
Sbjct: 204 QIPESLILSHKCPQFKAF-----FQNKLKDPEAFSRLICEISSQCDFESYYILELKDGRT 258

Query: 153 IKIEGRVS--GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
              + +    G     R+ S+     ++ +T      L  + + F+ L ++ +  ++   
Sbjct: 259 FAHQSKPHYLGDKIVGRVWSIW----DITQTQETEATLRLNEARFRTLAETTEANIFLL- 313

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
           Q   + + N + ++ T  +           R +   E ++    ++A    + E     +
Sbjct: 314 QNTRLCYINPAVERLTGYKKEELLNDFDLRRLIKSREHRQVRHQNAAANFEYQEMNLLKK 373

Query: 271 HGNNKSYKIVRVLNSFG--------EAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
            G  +                    E    ID++    V  +L    E    L+ 
Sbjct: 374 DGTERWLACAVAKLDGMLDFGGKPVELITGIDITDYKNVESELNQALEQAKQLSE 428


>gi|88603925|ref|YP_504103.1| multi-sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
 gi|88189387|gb|ABD42384.1| Cache sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
          Length = 646

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 152/324 (46%), Gaps = 12/324 (3%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           IR ++       N ++  +L   I      E + L  + E +   + E           +
Sbjct: 321 IRPLSYLTDITKNITETGNLNQKIELHTKGEVQELAKSFERMIGKIKEEEEQKNKAFNEL 380

Query: 540 LTFVNVTDSVRAER---------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            ++ +  + +  ER          L  +     +AD++K++F+  +S+ELR+PL +IIGF
Sbjct: 381 SSYRDHLEDLVRERTQQLEAANTDLITERNRAEEADQLKSAFLATMSHELRTPLNSIIGF 440

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T ++     G LN +Q + +  +  S+  LL L+ND+LD++ ++AG + ++   + +   
Sbjct: 441 TGIILQGLAGPLNKEQEKQLGMVQDSARHLLALINDVLDISKIEAGELNISREPVNIQKS 500

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +  V  ++     +  + + V      G  + D++R+ QI   +++NA+ F+ +G  V +
Sbjct: 501 IESVCTTLRKSAEDKGLSLHVDISPDTGFIIGDQRRIEQILINLINNAIKFTERG-YVCV 559

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
           K++    +   SV + G  I E+  K +F  F         +  G GLGLSI +  + LH
Sbjct: 560 KSSLREKNVCISVSDTGIGISEEEMKKLFRPFQQIDTGTTRKHEGTGLGLSICKKLVELH 619

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + ++S     +     +P+ E
Sbjct: 620 GGTIMVTSEPGKGSEFTVILPAGE 643


>gi|91774050|ref|YP_566742.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713065|gb|ABE52992.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 582

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 180/377 (47%), Gaps = 17/377 (4%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL-------S 475
                   +  +     I+  ++G+ V   + ++K  NP F  +   + N +        
Sbjct: 207 KRKTEMIKSASEKYSVIINKGNDGI-VIEQNDKLKFVNPRFAKMVGYDANDIIGQPFSEY 265

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              H +N     +R   +S+G       I+   +E   +   +   S ++L Y       
Sbjct: 266 VQNHHKNELTNINRKLWKSEGPADHRYEISLISNENDIIPVEI---SSTILNYE----GK 318

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  +    ++T+  + E+ L +       A+  ++ F+ ++S+ELR+PL + IGF++++ 
Sbjct: 319 SSIVSVIRDITEHKQHEQELLDAKVKAENANTAQSEFIHNISHELRTPLNSTIGFSEMMI 378

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T  LG LN KQ +Y+  +  S   LL+L+N+IL+++ ++ G ++L    + +   + +V+
Sbjct: 379 TEVLGPLNDKQKKYLNNVKISGKHLLSLINEILNISKIENGEVELELDEVDIYTTVEDVE 438

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +A  + EN   + V  +  +G F ADR +L QI   ILSNA+ FS +   +I+     
Sbjct: 439 MLMAPILAENKNELIVNIEANVGKFTADRLKLKQILYNILSNAIKFSPENENIIMDIKVI 498

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
           +G    ++ + G  + E    ++F  FV     H  +++G GLGL+IV+ F+ LH G + 
Sbjct: 499 DGKLQTNITDKGKGLSEKEQANIFQPFVQLDDEHSEKQKGTGLGLTIVKRFVQLHKGKIW 558

Query: 774 ISSSDEGVTTINCRIPS 790
           I S +   TT    IP 
Sbjct: 559 IDSEEGKGTTFCFTIPL 575


>gi|17230934|ref|NP_487482.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132575|dbj|BAB75141.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 865

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 134/713 (18%), Positives = 270/713 (37%), Gaps = 80/713 (11%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
           ++L +  E L+ +         T +   + IE         L  ++L  +  E+++    
Sbjct: 37  VELERHIEDLQAK-------LRTLHITNVDIESH-------LEPVTLQRLQQEISQRQQV 82

Query: 185 CKKLSNHISVFKVLFDSLDF-----------LVWHRDQAGDILWANISYKKNTETEGIVF 233
              L+     +++  D+ +            +VW  +        + S+     T     
Sbjct: 83  DAALTESEERWRLALDAANLGFWDWNVLTAKVVWSENHERLFGLVSGSFD---GTYETFL 139

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKSYKIVRVLNSFGE 288
                E R+   + I   + + +     F      +++  +       Y           
Sbjct: 140 SCVHPEDRESVIQVIGVCLENKTDYYDEFRIVWPDKSIHWIAAKGRFFYN--DQGQPVRM 197

Query: 289 AGIAIDVSK-----------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            G+ +D++K              V +Q      IL      I IF++  + Q+ +     
Sbjct: 198 IGVCMDITKSKRTEENNRQLATQVQEQANVLNAILATSVDHIYIFNRTGHYQYVSHGGAA 257

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHLP 395
           +  +    +                  LP++L  K       +V K+ +  KD   +   
Sbjct: 258 VLGLYPQQMIGKTV---------QELNLPQELIDKV-NGQFLAVMKAGKPVKDECEYVAA 307

Query: 396 NGQTL-HVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           +G+     I+T      +   G I +  ++T     E              +    GVA 
Sbjct: 308 DGKHYYEYILTPLRNIDHNIEGVITVSRDMTEHKRAEQSIRNSEARFRRLFESNLIGVAF 367

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGWDLFAAIITSF 507
           +  DG I  +N A+  L      + +    I  R +     ++ ++    ++    I+  
Sbjct: 368 WNVDGFITDANDAYLQLVGYTREQFNTLGKINWRELTPPDYKHLDDRAIAEVKTNGISRI 427

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-------ALTEKNE 560
             E++ +Q     +S  VL  +++   + Q +   +++++   AE+       A     +
Sbjct: 428 Y-EKQYIQRNGRRVS-IVLGIALLDDSDEQGVAFVLDISERKLAEQQRDRLLCAERIARK 485

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               A+ IK+ F+  +S+ELR+PL  I+G++ LL++ +  +  + ++  +E I  ++T+ 
Sbjct: 486 DAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDRA--LETIERNATLQ 543

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+LD++ +  G + LN   + L  ++     ++        I+I+ + D  LG  
Sbjct: 544 TQLIEDLLDVSRILQGKLSLNICPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPNLGQV 603

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D  RL Q+   +LSNA+ F+S G TV +     N      V + G  I  +    VF+
Sbjct: 604 MGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQIQVIDTGKGITPEFLPYVFD 663

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
            F        R   G+GLGL+IV   + LHGG V   S  +G   T    +P 
Sbjct: 664 YFRQADGTTTRNFGGLGLGLAIVRQVVELHGGTVQAKSPGDGLGATFTVNLPL 716


>gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 1370

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/616 (18%), Positives = 231/616 (37%), Gaps = 80/616 (12%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
             +   G    +A+  S  ++  + +  M ++ +  ++  ++   L+ G       V +L
Sbjct: 276 HASPAVGATNLRAV-RSLPVYGRQWRLTMQATPSFVRSLNQSSPLLDGG---LVAGVSML 331

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
            +        +  +      + +    ++ + + AI   D    +   N +   ++    
Sbjct: 332 LAALLYLSLTNRHRRDLFLREQSQLAALVGSTSEAIVAEDLQGRVTHWNPAATRIFGYTA 391

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           A     P +  L   LR A+                    + +T     H  NGQT++V+
Sbjct: 392 AQAIGQPLHTLLGSHLRDAS--------------------NGDTQVRELHHRNGQTVNVL 431

Query: 404 VTSNP----RGGTIW---MFENLTVQVDLETKYNTLVK------------------VQGE 438
            + +P     G TI    +  ++T +V  E +   L                    +Q  
Sbjct: 432 ASVSPIIDVDGNTIGHSHLLHDVTERVRAEARVLELNATLEQQVAQRTSELVTYSALQRA 491

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            + H    +    P+G I L NPA  +L       +  G     +     +    ++   
Sbjct: 492 ILAHAGYAIIATDPEGTITLFNPAAETLLGYTAQAM-IGRKATGLFLDPEQLAERAERMT 550

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEY------------SIIPLPNA-----QTMLT 541
           + + I      E  +   TL         Y            ++  L +        +  
Sbjct: 551 IQSGIKVQPAFESIAALSTLGRSDTREWTYVNKDGLALPVLLTLSTLRDDDERVIGYLGI 610

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++T+ +R ER L    +A   A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   
Sbjct: 611 AVDLTEQMRRERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSE--- 667

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L       ++    S+  LL+++NDILD + +++G + L      L+ LL  +   + T 
Sbjct: 668 LPQAAKDMIQKTDISARALLDIINDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTA 727

Query: 662 MHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------R 714
           +    + + V    K       D  RL Q+   ++ NA+ F+ +G  V L          
Sbjct: 728 ISAKPVEMIVEPLPKGCRWLRGDALRLNQVLVNLVGNAIKFTEQGE-VTLSVRAFPSPEV 786

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  IP +    +F+ F+       RR  G GLGL+I    + L GG +
Sbjct: 787 GKIKLMFSVRDTGIGIPREKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGQL 846

Query: 773 SISSSDEGVTTINCRI 788
            + S+    +     I
Sbjct: 847 EVQSTPNRGSDFYFAI 862


>gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 822

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 174/375 (46%), Gaps = 18/375 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS--LWKTEENRLSPGTHIRNIA 484
            K     +     +  +S  +AV   D  +  +N ++R   L  T E+ L        + 
Sbjct: 177 RKLLAREEQLSSVLASMSAKIAVLDTDMMVIAANDSWREIFLPGTSEDVLDGIDFRDAVF 236

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLT 541
           ++     +  +  D   +++   +  + S + + E   +    +LE + +   +   + +
Sbjct: 237 SSGCLRGSLHELVDGVRSVVEG-NSRKFSYEYSFEQGGEPKWYLLEVTPMQGESGGAVAS 295

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F+ +T+    ER L    +A  KA+  K+ F+  +S+E+R+PL  IIG TDL   S+   
Sbjct: 296 FIEITERKEMERELITARDAAEKANRFKSRFLASMSHEIRTPLNAIIGLTDLTLRSE--- 352

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L++KQ++ +E +  S+  LL L+NDILDL+ V+A ++ L  S   L++ + +V +S+  +
Sbjct: 353 LSTKQAEDLELVKISADQLLTLINDILDLSKVEARMLTLEESDFSLSEAMRDVVRSMEQQ 412

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD- 718
             +  + + +  D  +      D+ RL QI   ++ N++ F+  G   V +    D  D 
Sbjct: 413 ARDKGLALNIEVDDDVPEAVCGDQVRLKQILYNLIGNSIKFTENGGVFVQVSKLEDRKDS 472

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                + SV++ G  IP++    VF  F        R   G GLGL+I    + + GG +
Sbjct: 473 DEAVILVSVRDTGIGIPDEKQNIVFESFRQADDSTTRKFGGTGLGLAISRELVEMMGGRI 532

Query: 773 SISSSDEGVTTINCR 787
            + SS+   +  +  
Sbjct: 533 GVKSSEGFGSVFSFH 547



 Score = 41.1 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 13/154 (8%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW--EIDLAFLATNP 350
           +DV+    +  +      +L +++  IA+ D +  +   N S+ E++        L    
Sbjct: 172 LDVANRKLLARE-EQLSSVLASMSAKIAVLDTDMMVIAANDSWREIFLPGTSEDVLDGID 230

Query: 351 SNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDT----WHLPNGQTLHVIVT 405
             D +         L E ++  ++  E     +    + +      W+L     L V   
Sbjct: 231 FRDAVFSSGCLRGSLHELVDGVRSVVEGNSRKFSYEYSFEQGGEPKWYL-----LEVTPM 285

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               GG +  F  +T + ++E +  T      + 
Sbjct: 286 QGESGGAVASFIEITERKEMERELITARDAAEKA 319


>gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
 gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
          Length = 1107

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 103/512 (20%), Positives = 211/512 (41%), Gaps = 33/512 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
              +   +    IL     AI   D   ++   N S   ++         N +   L++ 
Sbjct: 264 EEKSADESRLNAILETAIDAIVTIDHRGHILSFNASATHIFGW-QEHEVKNKNIKMLMDE 322

Query: 359 LRSANKLPEQLNWKTWKEN-IFSVYKSSET-HKDTWHLPN----GQTLHVIVTSNPRGGT 412
             + +      N K    N +  V +     HK+    P     G+      T    G  
Sbjct: 323 KLAKHHDEYLSNAKDVNSNKVLGVNREIFAKHKEGHLFPIRIGIGEVNQPGQTPLYVGYI 382

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV--AVFGPDGRIKLSNPAFRSLWKTE 470
                +LT Q +L+       +     I+++   V       +  +   +P+   L   +
Sbjct: 383 T----DLTEQRELQRSLVEKEQKYRSLINNMPGAVFRCRLDDNWSMLFISPSILELTGYQ 438

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSVL--- 526
            +  +      N          ++D   +  A+ ++  ++R+ S++  +   +  VL   
Sbjct: 439 SDEFTEHCLEFN------DLILKTDQQAVIDAVTSAVKEKRQYSIEYRIRHRNGKVLWLL 492

Query: 527 ---EYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
               +       AQ +   FV++T+    E  L +      +A + K SF+ ++S+E+R+
Sbjct: 493 DQGSFYFNNKGEAQWIDGVFVDITERKEYEEKLEKAKLIAEEAAQAKQSFMANMSHEIRT 552

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+ +IIGF+DLL  +    LN++Q +++  ++ ++  LL L+N++LD A ++ G + +  
Sbjct: 553 PMNSIIGFSDLLMDT---PLNNEQQKHLVTVNNAARSLLRLLNEVLDSAKLERGKLTIEA 609

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDF 701
               L  +++ +  +   +  + ++ + +   +    ++  D  RL QI + ++ NA+ F
Sbjct: 610 VHFSLKPVIDSIISTFWLEAKKKDLILHLTIKESVQNTYYGDPDRLRQILTNLIGNAIKF 669

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +  GS  I  +   NG   F V++ G  I +D   ++F  FV       RR  G GLG +
Sbjct: 670 TEHGSVTITVSTTQNGHLFFEVQDTGIGIEKDRVSAIFQPFVQADGTTTRRFGGTGLGTT 729

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I +  + L GG +++ S     T     +P K
Sbjct: 730 ISKQLVELMGGTINLVSEVNKGTCFYFSLPLK 761


>gi|298482954|ref|ZP_07001136.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270926|gb|EFI12505.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 621

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 117/541 (21%), Positives = 217/541 (40%), Gaps = 44/541 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+GN K Y I         A      S    + +     + I  NL V I ++D++  
Sbjct: 104 TDENGNTKVYGIAETQEGIHIA------SAHQALQNSERILHNIYKNLPVGIELYDKDGQ 157

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSSE 386
           +        +L + D+     +   D L   +     LPE++  K    EN    ++   
Sbjct: 158 MV-------DLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYDF 210

Query: 387 THKDTWHLPNGQTLHVIVT---------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +  + ++ PN  T  + +T         ++     + +  + T       K         
Sbjct: 211 SKINKYYQPNSTTGFIDLTTKVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFESFFD 270

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD-- 495
              D+   G A F       LS   +             GT +  I    S ++ E    
Sbjct: 271 LVGDYAKVGYAHFDA-----LSRDGYALRSWYRNVGEEEGTPLPEIIGIHSHFHPEDRAV 325

Query: 496 GWDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDS 548
             D    +I       S D   +           +VL  +  P  N  + +    ++T+ 
Sbjct: 326 MIDFLDKVIKGESSKLSRDVRIRRADENYTWTRVNVLVRNYQPQDNIIEMLCINFDITEL 385

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+      +      ++  
Sbjct: 386 KETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSS---LLEEAEDAEEKHL 442

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ QS+  +  E  + 
Sbjct: 443 YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRATE-QVE 501

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I +  +    +F +D+ RL Q+    ++NA+ F+S+GS +++    +  +  FSV++ G 
Sbjct: 502 ILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGS-IVIDYRINGNEVRFSVQDTGM 560

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  +  +++F RFV   +     G GLGL I +S +   GG + + S     +      
Sbjct: 561 GIEPEKQEAIFTRFVKLNNFIA--GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTH 618

Query: 789 P 789
           P
Sbjct: 619 P 619


>gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 1120

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 106/520 (20%), Positives = 208/520 (40%), Gaps = 42/520 (8%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +VS++   N+Q      ++      I   +    +   N++   +   D A L      
Sbjct: 265 REVSQKAFANEQ--RLEAMMETAADGIVSINAKGIITSINQAITAMLGWDKAQLIGQNV- 321

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
                    +  +PE    +   ++  S Y ++       +      LH +  + P    
Sbjct: 322 ---------SLLMPEPDKGRH--DSYLSRYLATNEPHIIGNAREVTALHKLGHTVPVRLA 370

Query: 409 --------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDG-RIKL 458
                       +    +++ ++ +E +     +     I ++          +G  +  
Sbjct: 371 IGHARLPNEDVFVGFISDISQRLKMERELKENEEKFRSLIGNIPGAAYRCLDTEGWPMLF 430

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            + A   +     +       +RNI       + E   +D       S +       G +
Sbjct: 431 VSDAVFDITGYPASDFLLPNPVRNICDLYHPEHQELLQFDADKNKTFSLEYRIIRSDGEI 490

Query: 519 ELLSDSVLEY-SIIPLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQ 574
                 VLE  + +  P    +     + D     + E+ L +  EA   A E K++F+ 
Sbjct: 491 RW----VLETGTYVKDPQGSVLWMDGFIMDITPRKQMEQDLQKAKEAAELATEAKSAFLA 546

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIGF+D++ T+    L + Q +YV  I+AS+  LL+L+NDILD A ++
Sbjct: 547 NMSHEIRTPMNAIIGFSDVMLTT---DLVAAQRKYVTTINASANSLLHLLNDILDSAKLE 603

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
            G ++L      L ++++ V  +++ +  +  + I++    +L  +      RL Q+   
Sbjct: 604 KGQLQLEMQDFSLAEVIDMVTSTLSIQTRKKRLDIELSLAPELAEYYYGAADRLRQVLMN 663

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           I+ NA+ F+ KG   +      +G  +FSV++ G  I  D  + +F  F        RR 
Sbjct: 664 IVGNAVKFTEKGQVHLSIKPTQDGKVLFSVQDTGIGIASDRIQHIFEPFTQADASMSRRF 723

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLG SI +  +NL GG +  SS     +     +P K
Sbjct: 724 GGTGLGTSISKQLVNLMGGEIWASSELGKGSCFEFILPLK 763


>gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1490

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/703 (16%), Positives = 242/703 (34%), Gaps = 86/703 (12%)

Query: 142  DLVAETQ----NDCAIKIEGRVSGSCAFLR--------ILSLDGIYSELAETTLKCKKLS 189
             +  ET      +  I   G V  +    R        ++ L  +  ++ E       L 
Sbjct: 818  SMSIETPMLVIENRVIDGRGEVRWTQWVNRMLFDNQGNLIELQSVGRDITELKQVEGALR 877

Query: 190  NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV-------FQKAIGESRK 242
                  ++  ++    +W  +   D ++ +  + +    +          +++ +     
Sbjct: 878  ESQERLQLALEASGDGIWDWNILTDEVYLDPQFFQMLGYKADELTSSFSTWEQLVHPEDL 937

Query: 243  LFKEEIKKRMISSSALEKNFCETVSTL------EHGNNKSYKIVRVLNSFGEAGIAIDVS 296
            ++ +E  ++ + ++A++  F   + T            K   I           I  D++
Sbjct: 938  IWVKERLEKHLENTAVDYRFDYRLQTKSNEWKWIANYGKVVAIDEKGKPLRMIAIHRDIN 997

Query: 297  KEITVNDQLTHTYE----ILH---------NLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                    L  + E     L           +     I+++N            L  +  
Sbjct: 998  DRKLFEAALLESEEQRRLALDLTHIGFWDWQIPTGQLIWNENH---------FTLLGLPS 1048

Query: 344  AFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
                  P  ++  + +      PE     +         +   E+     H P+G    +
Sbjct: 1049 N--NPKPRYEDWRDCIH-----PEDKERVEQLYTKSIETHTDYESEYRIIH-PDGSVHWL 1100

Query: 403  IVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            +  +            ++ +  ++T +  +E       +     +D++   V     DG 
Sbjct: 1101 MARAKAIYDLEGQPVRSLGVLLDITDRKHIEASLRESDRRWQSLLDNVQLVVIGLDLDGY 1160

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            I+ +NP F  L   +   +        +               L       + +   +  
Sbjct: 1161 IEYANPFFLKLTGYQLEEVLGQYWFDFLNPQEKHPLKIIFKEVLEQNFHPYYQNSVMTKS 1220

Query: 516  GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
            G   +++ +      +      TM    ++T+  + ER              +K  F+  
Sbjct: 1221 GEERMIAWNNTILKDVAGEPIGTMSIGEDITERDKVER--------------MKAEFISV 1266

Query: 576  VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            VS+ELR+PLT++     LL    +   + +    ++  +  +  L+ LVNDILDL  +++
Sbjct: 1267 VSHELRTPLTSMQAALSLLSEKIIDPNSPEGEATIQIATEGTDRLVRLVNDILDLERLES 1326

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
            G ++L  S   + DL+      +    ++ NI +K I         AD  R+LQ+ + +L
Sbjct: 1327 GKIRLKKSLCNVIDLIETAIAQMQEMANQANITLKFILCS--FQIEADADRILQVLTNLL 1384

Query: 696  SNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
            SNA+ FS   ST+ L       +       F V++ G  IP     S+F RF  V  +  
Sbjct: 1385 SNAIKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIPSAHLDSIFARFGQVDASDS 1444

Query: 749  GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              + G GLGL+I  S +  HGG +   S     +T    +P K
Sbjct: 1445 RTKGGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLPKK 1487



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 114/321 (35%), Gaps = 28/321 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  EL       +++ +  + F+          W  D  G +L+AN +Y +  +   ++ 
Sbjct: 611 LEQELLRRERIEQEIRHSEARFQAFMAHNPACAWITDSNGQMLYANQTYYQTFQ---LLN 667

Query: 234 QKAIGESR-KLFKEEIKKR--------MISSSALEKNFCETVSTLEHGNNKSYK--IVRV 282
           Q+ IG +  +L+ +EI +         + S + LE +          G    Y   +   
Sbjct: 668 QEVIGHNLFELYPDEIAQHYLNNIQAVVKSQTTLETSRHSLKPDGTMGEFLVYNFLVPNS 727

Query: 283 LNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
            +     GIA+D+++   +   L         I+ + T  IA F  +  + F N ++   
Sbjct: 728 SDEQLVGGIAVDITERKRIEKALQASEIRYRAIIEDQTEMIARFLPDSTVLFVNEAYCRY 787

Query: 339 WEIDLAFLATNPSNDELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           + I    +     +  + E  L   N+L E ++ +T    +          +  W     
Sbjct: 788 FNIKREEILNKSYSPVIYEADLEKVNQLVESMSIET-PMLVIENRVIDGRGEVRWTQWVN 846

Query: 398 QTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           + L      + +G  I +     ++T    +E       +     ++   +G+  +    
Sbjct: 847 RMLF-----DNQGNLIELQSVGRDITELKQVEGALRESQERLQLALEASGDGIWDWNILT 901

Query: 455 RIKLSNPAFRSLWKTEENRLS 475
                +P F  +   + + L+
Sbjct: 902 DEVYLDPQFFQMLGYKADELT 922



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 99/328 (30%), Gaps = 57/328 (17%)

Query: 293 IDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            ++S+   + + L  + E+  +L     + I   D +    + NR + ++   DL    T
Sbjct: 455 RELSERKRIQNILQKSEELFRSLSAAAPIGICQIDADGMCIYSNRRWQKMSGQDL----T 510

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTW---KENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           N      LE +   ++      WKT+   K    S ++     K          + V V 
Sbjct: 511 NSLGYGWLEAIHPEDRGLCLRGWKTYLQGKGRFLSEFRLLTPQKKVH------WVWVQVA 564

Query: 406 SNPRG-----GTIWMFENLTVQVDLETKYNTLVK-------------------------- 434
                     G +  +E +T +   E     L +                          
Sbjct: 565 PMQSATGEIIGHVCTYEEITARKQAELALQKLNEELEIRVSQRTVELEQELLRRERIEQE 624

Query: 435 ------VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                      + H      +   +G++  +N  +   ++     +             +
Sbjct: 625 IRHSEARFQAFMAHNPACAWITDSNGQMLYANQTYYQTFQLLNQEVIGHNLFELYPDEIA 684

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTD 547
           ++Y   +         T+ +  R SL+    +    V  + +    + Q +    V++T+
Sbjct: 685 QHY--LNNIQAVVKSQTTLETSRHSLKPDGTMGEFLVYNFLVPNSSDEQLVGGIAVDITE 742

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQH 575
             R E+AL       R   E +   +  
Sbjct: 743 RKRIEKALQASEIRYRAIIEDQTEMIAR 770



 Score = 46.1 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 57/426 (13%), Positives = 133/426 (31%), Gaps = 30/426 (7%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            + GI  ++ E     K L      ++ + +    ++        +L+ N +Y        
Sbjct: 733  VGGIAVDITERKRIEKALQASEIRYRAIIEDQTEMIARFLPDSTVLFVNEAY---CRYFN 789

Query: 231  IVFQKAIGESRKLFKEEIK----KRMISSSALEKNFCETVSTLEH--GNNKSYK-IVRVL 283
            I  ++ + +S      E       +++ S ++E       + +    G  +  + + R+L
Sbjct: 790  IKREEILNKSYSPVIYEADLEKVNQLVESMSIETPMLVIENRVIDGRGEVRWTQWVNRML 849

Query: 284  NSFGE-----AGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFDQN--RYLQFHNRS 334
                        +  D+++   V   L  + E L          I+D N      + +  
Sbjct: 850  FDNQGNLIELQSVGRDITELKQVEGALRESQERLQLALEASGDGIWDWNILTDEVYLDPQ 909

Query: 335  FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI---FSVYKSSETHKDT 391
            F ++       L ++ S  E L        + E+L        +   F     +++++  
Sbjct: 910  FFQMLGYKADELTSSFSTWEQLVHPEDLIWVKERLEKHLENTAVDYRFDYRLQTKSNEWK 969

Query: 392  WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            W    G+ + +     P    I +  ++  +   E       + +   +D    G   + 
Sbjct: 970  WIANYGKVVAIDEKGKPL-RMIAIHRDINDRKLFEAALLESEEQRRLALDLTHIGFWDWQ 1028

Query: 452  -PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             P G++  +   F  L     N        R+    C    ++     L+   I +  D 
Sbjct: 1029 IPTGQLIWNENHFTLLGLPSNNPKPRYEDWRD----CIHPEDKERVEQLYTKSIETHTDY 1084

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                +      S   L      + + +              +R       +LR++D    
Sbjct: 1085 ESEYRIIHPDGSVHWLMARAKAIYDLEGQPVRSLGVLLDITDR--KHIEASLRESDRRWQ 1142

Query: 571  SFVQHV 576
            S + +V
Sbjct: 1143 SLLDNV 1148



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             G+  D+S+     + L    + L        V++A+ D N      ++ +V+++ +  
Sbjct: 138 MVGVTFDISERKEREETLAKDEQKLSLFVRCAPVSVAMLDTNMNYIAVSQRWVDVYHLGE 197

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS--VYKSSETHKDTWHLPNGQTLH 401
                   + E+   +            + W+E      V +  +  +D + LP+G    
Sbjct: 198 IEAILGHCHYEIFPNI-----------PQRWREIHQRGLVGELIKCEEDRFTLPDGTVQW 246

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           +     P        GG     E++T     +T     ++ +
Sbjct: 247 LKWEVQPWRHKTGQIGGIFIFVEDITELKQAQTTLEQQIQQE 288


>gi|265763357|ref|ZP_06091925.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255965|gb|EEZ27311.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 899

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 105/514 (20%), Positives = 221/514 (42%), Gaps = 32/514 (6%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G   +++      + +      ++N   ++    ++  L F NR F          L   
Sbjct: 234 GYIQNITDIQRKRNDINTLTHAINNAKESVYAARRDGTLIFANRQFR---------LNHR 284

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----------NGQT 399
            +    L  +R  + + +    + W+E   S+ +  +T     + P           G  
Sbjct: 285 IAEQADLSLIRVFDVVGDMTCIEDWEERYRSI-REGQTLNFLAYQPLKHDKNTLAFEGTM 343

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
             V  T++    T W F  +++ ++  E++     ++   T++++  G+ V   +   + 
Sbjct: 344 YSV--TTDDGEETFWSFTHDISERIRYESQIKRFNRIMDTTMENIPAGIVVKDIENDFRY 401

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGT 517
                 S  +   +  + G +  +            +  ++ A      +  E K   G 
Sbjct: 402 IYRNRESYNRDISSENAIGMNDFDYYPLEMAQQKRKEDMEIAATGKGMHWIMEGKDKNGN 461

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L +L    +        +   +    ++T      R L E  E    +D++K++F+ ++S
Sbjct: 462 LLILDKQKIMVESEDF-SPIIVSIEWDITQLELMRRELIESKEKAETSDKLKSAFLANMS 520

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ ++  S       ++ +Y E + A++  LL L+N+ILDL+ +++GI
Sbjct: 521 HEIRTPLNAIVGFSRIISESDNA---EERREYYEIVDANNERLLQLINEILDLSKIESGI 577

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++  Y  + L+ L  E+  +   +  +  + ++  S  +  S  +D+ R+ Q+FS ++ N
Sbjct: 578 VEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFDSPDEALSIHSDKNRIFQVFSNLIGN 636

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A  F+++GS V     ++    +F VK+ G  I  +    VF RF    +  Q  G GLG
Sbjct: 637 AFKFTTEGS-VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLNNFAQ--GTGLG 693

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LSI ++ I   GG +++SS     TT    +P +
Sbjct: 694 LSICKTIIERLGGEIAVSSEVGTGTTFTFWLPLE 727


>gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 606

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 94/403 (23%), Positives = 165/403 (40%), Gaps = 33/403 (8%)

Query: 394 LPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVF 450
           +  G    V    +    G     F  +  ++       +  K + ETI +++++GV  F
Sbjct: 216 IAEGDFTQVEEVKSDDEIGKLTKTFNYMAKELKKTLNEISREKNKIETILNYMTDGVIAF 275

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             DG +  +NPA + +    E  +             S  YN                  
Sbjct: 276 NLDGEVVHANPASKLMLGVNEFNMDFNK--------FSNMYNLGI--------------- 312

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEI 568
             +++  L L + S  E S+        +   ++  D  +AE   A+   N   +K D +
Sbjct: 313 --TIEEMLYLETFSTKEASLSFDNKYIRVYFALSTNDQNKAEGIIAVMHDNTVQQKLDNM 370

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+ELR+PLT+I  +++ L    L        +++  I++ +  +  LV D+L
Sbjct: 371 RREFVANVSHELRTPLTSIKSYSETLMDGALED-KETAYRFLNVINSEADRMTRLVKDLL 429

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            L+ ++   M+ N        L+    + I     E    I+  S G      AD+ R+ 
Sbjct: 430 QLSRLENEQMQWNMQPFCFESLVRSSVEKIELSAKEKRQVIECFSIGDKPEVYADKDRIE 489

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-- 746
           Q+   +L+NA+ ++     + +   +   D    V ++G  IPE+  K VF RF      
Sbjct: 490 QVVLNVLTNAIKYTPDKGKITVYIGKMYSDAYVKVVDSGIGIPEEDIKRVFERFYRVDKA 549

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  G GLGLSI +  I  H G +SISS     T +  R+P
Sbjct: 550 RSREMGGTGLGLSIAKEIIEAHKGSISISSQLGKGTEVIVRLP 592


>gi|29349960|ref|NP_813463.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341871|gb|AAO79657.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 635

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 172/378 (45%), Gaps = 19/378 (5%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           N+T Q + E     L +   + I+ L E + +F  +  I                     
Sbjct: 137 NVTSQCEKEQHIKHLEEHNRKIIEALPEFIFIFDENFFITDV---------LMAPGTILL 187

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL-LSDSVLEYSIIPLP 534
             +  +     R     +  DLF   I     D + K ++  LE+  S    +  I P  
Sbjct: 188 HPVEVLKGADGRSIYSPEVSDLFLCNIRECLKDGKLKEIEYPLEVDGSKHYFQARIAPFE 247

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++ D +R    L E       AD +K+ F+ ++S+E+R+PL  I+GF++++
Sbjct: 248 GNTVLALIHDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFSEIM 307

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L     ++ +Y+E I  +S +LL L+NDILDL+ +++G  ++++  + +  L++EV
Sbjct: 308 A---LTENEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEV 364

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++    KM + N+ +KV+          DR R++Q+    LSNA+  +  GS + L   +
Sbjct: 365 EKVHQLKM-KLNVDLKVVRPQGEFWTSTDRNRVMQVLFNFLSNAIKNTETGS-ITLGLKQ 422

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       V + G  IPE+    +F RF       Q  G GLGLSI +S +   GG + +
Sbjct: 423 EGDWLKLFVSDTGCGIPEEKLPQIFTRFEKLNDFVQ--GTGLGLSICKSIVERLGGRIEV 480

Query: 775 SSSDEGVTTINCRIPSKE 792
           SS     +T    +P +E
Sbjct: 481 SSELGQGSTFALYLPYQE 498


>gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1067

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 111/633 (17%), Positives = 226/633 (35%), Gaps = 51/633 (8%)

Query: 174 IYSELAETTLKCKKLSNHI-SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
             ++++       +L+  +  + + + ++ D          D+   N S + ++      
Sbjct: 29  AAADVSALPEPLARLAQGLPDLLRRVGETYDQ------HERDLTLRNRSLELSSSELTKA 82

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
             K   ES    +     R  ++  L+      +   E G                  +A
Sbjct: 83  NAKLREESAAQARAITSLRTTANEILDAAGRPPLPEDETG-----------LEGLSTLMA 131

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
             + +       L      L    + ++I DQ   + + N  F ++   D + L      
Sbjct: 132 DLMRERAEFQHNLERQKFALDQHAI-VSITDQTGTIIYANEKFCQISGYDASELLGANH- 189

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--- 409
                 + ++   P ++    W+          E         +G    V  T  P    
Sbjct: 190 -----RIVNSGLHPREMFTDMWRTIGNGQVWRGEVCN---SKKDGSLYWVDATIVPILDA 241

Query: 410 ----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                  I +  ++T +  +E       K     +D    G+  +         +  + +
Sbjct: 242 NNRPRQYIGIRTDITARKTMEAALRESEKRLQIALDAGRIGLWSWNTRTDEAFFSDQWMA 301

Query: 466 LWKTEENRLS-PGTHIRNI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--L 520
           +     N L+  G+  + +     C   Y   +     A  +   +   +   G+    L
Sbjct: 302 MLGYAANELAACGSTWKALMHPDDCDATYAALEQHLEGATPVYEAEFRLRHKDGSWRWVL 361

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            S  V++         +       +TD  + E  L E  E    A+  K+ F+  +S+E+
Sbjct: 362 ASGRVID-RDAEGRAIRIAGVHKEITDRKQVEDMLKEAVERAEAANRAKSEFLATMSHEI 420

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  IIG T LL  ++   L  +Q  +   +  S+  LL+++NDILD + ++AG ++ 
Sbjct: 421 RTPMNGIIGMTGLLLDTQ---LTREQMHFANTVRTSAEALLSIINDILDFSKMEAGRLEF 477

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAM 699
            Y    +  L+  V   +A ++   N+ +  +      G F  D  RL Q+   +  NA+
Sbjct: 478 EYGPFEIRPLIEGVVDILAPRVKGRNVELTYVVPPSARGVFYGDAGRLRQVLLNLAGNAI 537

Query: 700 DFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
            F+  GS  + ++A  +  D       V + G  I ++    +F  F        RR  G
Sbjct: 538 KFTEIGSVHIGIRAETEFDDMVRLRIEVVDTGIGISDNAKSRLFTMFTQADSSTARRFGG 597

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            GLGL+I    +++ GG +   S++   +T   
Sbjct: 598 TGLGLAISRRIVDMMGGEIGFDSTEGQGSTFWF 630



 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 50/393 (12%), Positives = 122/393 (31%), Gaps = 65/393 (16%)

Query: 108 TDTDLLSFENWLKFHHYIKLSKATEK--------LRKEGQSFDLVAE--TQNDCAIKIEG 157
            D++  +F + L       L +   +        LR+ G+++D      T  + ++++  
Sbjct: 17  DDSEAQAFIDALAAADVSALPEPLARLAQGLPDLLRRVGETYDQHERDLTLRNRSLELSS 76

Query: 158 -------------RVSGSCAFLRILS--------------------LDGIYSELAETTLK 184
                          + + A   + +                    L+G+ + +A+   +
Sbjct: 77  SELTKANAKLREESAAQARAITSLRTTANEILDAAGRPPLPEDETGLEGLSTLMADLMRE 136

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE--SRK 242
             +  +++   K   D    +V   DQ G I++AN  + + +  +      A     +  
Sbjct: 137 RAEFQHNLERQKFALDQH-AIVSITDQTGTIIYANEKFCQISGYDASELLGANHRIVNSG 195

Query: 243 LFKEEIKKRMISSSALEKNFCETV-STLEHGNNKSYKIVRVL------NSFGEAGIAIDV 295
           L   E+   M  +    + +   V ++ + G+        V             GI  D+
Sbjct: 196 LHPREMFTDMWRTIGNGQVWRGEVCNSKKDGSLYWVDATIVPILDANNRPRQYIGIRTDI 255

Query: 296 SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           +   T+   L  + + L        + +  ++      F +  ++ +       LA    
Sbjct: 256 TARKTMEAALRESEKRLQIALDAGRIGLWSWNTRTDEAFFSDQWMAMLGYAANELAA--C 313

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDT---WHLPNGQTLHVIVTS 406
                  +   +        +   E    VY++     HKD    W L +G+ +      
Sbjct: 314 GSTWKALMHPDDCDATYAALEQHLEGATPVYEAEFRLRHKDGSWRWVLASGRVIDRDAEG 373

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                   + + +T +  +E      V+     
Sbjct: 374 RAI-RIAGVHKEITDRKQVEDMLKEAVERAEAA 405


>gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 591

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 157/380 (41%), Gaps = 28/380 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  NL   V  +          G  I+++  G+ +    G I L N  ++ ++    +  
Sbjct: 229 LARNLQEMVKSQEMQQ---DRLGALIENMGSGLILIDSRGYINLMNRPYKEVFNVNPSEY 285

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               +   I           +   +   +   F  E+K  +  +  ++     + +  +P
Sbjct: 286 LYKLYYEVI-----------EHKGITEMVEEIFMTEQKVKKQLIIPVNIERRYFEVYGVP 334

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              T        D  +    +      L+K ++++  FV +VS+EL++P+T+I GF++ L
Sbjct: 335 IIGT-------NDEWKGILLVFHDITELKKLEQMRKDFVANVSHELKTPITSIKGFSETL 387

Query: 595 KTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
                G++  KQ+   ++  I   S  L +L+ D+LDL+ ++     L+   + L D+L 
Sbjct: 388 LD---GAMEDKQALNDFLSIILKESDRLQSLIQDLLDLSKIEKQGFSLSIQQLDLTDVLE 444

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +V   +  K  E  I  K   D K      D  RL Q+F  I+SNA+ ++     + + A
Sbjct: 445 DVMAIMKGKAAEKEIVFKYQRDEKPVYIEGDIHRLKQVFINIISNAISYTPNQGVIYISA 504

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGG 770
           A+     +  +++ G  I       +F RF            G GLGL+IV+  +  H G
Sbjct: 505 AKTGSTVLTEIRDTGIGIEASEIPRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKG 564

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +S+ S     T+    +P 
Sbjct: 565 SISVKSEVGKGTSFIIELPK 584



 Score = 40.7 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDV------SKEITVNDQLTHTYEILHNLTVAIAIF 322
           L  GN ++       +  G    +I+V          +   Q      ++ N+   + + 
Sbjct: 202 LTKGNYRARTYEDQEDETGMLSKSINVLARNLQEMVKSQEMQQDRLGALIENMGSGLILI 261

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-----LRSANKLPEQLNWKTWKEN 377
           D   Y+   NR + E++ ++ +         E++E      +     + EQ   K     
Sbjct: 262 DSRGYINLMNRPYKEVFNVNPSEYLYK-LYYEVIEHKGITEMVEEIFMTEQKVKKQLIIP 320

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           +    +  E +           + +I T++   G + +F ++T    LE 
Sbjct: 321 VNIERRYFEVYG----------VPIIGTNDEWKGILLVFHDITELKKLEQ 360


>gi|194017044|ref|ZP_03055657.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
 gi|194011650|gb|EDW21219.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
          Length = 593

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 168/393 (42%), Gaps = 27/393 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q+    T  N   +     +  +++GV     DG I ++NP
Sbjct: 221 ILTQDEIGELAIAFNQMGKQLKFHITALNQEKEHLSNILSSMADGVITINIDGTILMTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +      +     +R        +LF   +++  ++ + ++ TL+  
Sbjct: 281 PAERFLQAWYYEQNMKIKDGDELPPEAR--------ELFHTAVST--EKEQMIEVTLQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +  +L   + PL N Q +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 TWVLL---MSPLYNQQDVRGAVAVLRDMTEERRL----------DKLRKDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  + G+++ +     GS   ++ +  + I   S  +  LVND+LDLA ++AG + LN
Sbjct: 378 TPIAMLQGYSEAIVDDIAGS-EEEKKEIAQIIYDESLRMGRLVNDLLDLARMEAGHITLN 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             +    +L  ++ +       E  + +          FV D  ++ Q+F+ ++ NA+  
Sbjct: 437 LESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQVDEPYFVLDPDKIEQVFTNLIDNAIRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           + +G  V              VK++GS IPE+    +F RF        R   G GLGL+
Sbjct: 497 TPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDLPFIFERFYKADKARTRGRSGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           IV++ +  H G +   S     T     IP K+
Sbjct: 557 IVKNIVEAHQGSIHAHSKAGTGTHFTFYIPRKK 589


>gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
 gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
          Length = 889

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 164/391 (41%), Gaps = 21/391 (5%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR------ 473
           T       +   +  +Q   +D  S  +     +G I   NPA   L   +         
Sbjct: 366 TDVKLRTQQIADISMLQRSILDSASYSIIATDINGLITEFNPAAEKLLGYKAFDVVGKKT 425

Query: 474 ---LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS- 529
                  T + + A   S   N+         I+ +   E    Q T        ++ S 
Sbjct: 426 CSIFHVETELTSKAKQLSIELNKIVSPGFETLIVKTTPTEPDVNQWTYVDSKGRHIQVSL 485

Query: 530 -IIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +  L N +      +    ++T  ++ E+AL    E   ++ + K+ F+ ++S+E+R+P
Sbjct: 486 SVTSLLNNRAQVVGFLGIAFDLTQQIKHEQALAHAKELAEQSSKTKSEFLANMSHEIRTP 545

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   LL+      +N K + Y++    S+  L  ++NDILD + ++AG + L   
Sbjct: 546 MNGILGTLQLLQEQ---PMNDKSTDYLKKALYSTRSLTTIINDILDFSKIEAGKLSLEQK 602

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              L++L++ ++  +     E NI +K  S      +  D  R+ Q+F  I+ NA+ F+ 
Sbjct: 603 VFELDELIHHLESDLLVPAQEKNIYLKFKSTIHHKYWRGDAVRIRQVFLNIIYNAIKFTH 662

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
           KG   +     D+      V + G  IP+++   +F RF        R   G GLGL I 
Sbjct: 663 KGGVTVEFKLTDDEQVCAIVSDTGIGIPKNVVNRLFERFEQAESSTTREYGGTGLGLPIT 722

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +S INL  G + ++S +   +     +P ++
Sbjct: 723 KSLINLMDGDIKVTSEEGVGSQFYVYLPLEQ 753


>gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Anabaena variabilis ATCC 29413]
          Length = 1399

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 95/505 (18%), Positives = 187/505 (37%), Gaps = 36/505 (7%)

Query: 306  THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 +L ++ + I +   +  ++    +   ++ +               +  R  + +
Sbjct: 751  NDLQNLLSSINIPILMLGGDLRIRRFTPTAERIYNLIPT------------DIGRPLSDI 798

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLT 420
               LN    ++ I  V  +            G    + +       N   G + +  ++ 
Sbjct: 799  NHNLNISDLEQQIQEVIGTLTFKVQEVQDNEGHWYDLRIRPYRTMDNKIDGAVVVLVDID 858

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                   +           +D + E + V   + R+  +N +F   ++ +    +    I
Sbjct: 859  ALKRSAEQLRASRDYAEAIVDTMRESLVVLDLNLRVVRANRSFYETFQIQPTE-TEQRLI 917

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +I              +     IT F D    +    E L    L  +   +P      
Sbjct: 918  FDIGNGRWNIPQLRSLLEEIPPNITPFQD--IEVGHNFEQLGYKTLRLNARKMPQIDDTQ 975

Query: 541  TFVNVTDSVRAERALTEKN-----------EALRKADEIKNSFVQHVSYELRSPLTNIIG 589
              + + + +  ++ L  +            EA   A+  K+ F+  +S+ELR+PL  I+G
Sbjct: 976  LILLLIEDITQQKQLEAERTQLLAQEHSAREAAETANRAKDEFLSILSHELRNPLNTILG 1035

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +  LL T +L +    Q   +E I  S+    +L++D+LD++ + +G ++++   I L  
Sbjct: 1036 WASLLSTHQLEADTVNQG--LEAIERSAQAQAHLISDLLDVSRISSGRLRMDAQPIELIP 1093

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            ++      +       NI I+   D    + V D  RL Q+   +LSNA+ F+     + 
Sbjct: 1094 IIEAAIAVVRLAAEAKNIHIETQLDPTQKTIVGDPIRLQQVIWNLLSNAIKFTPVRGRID 1153

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            +     +      + + G  I  D    +F RF        R   G+GLGLSIV   + L
Sbjct: 1154 ITLEYTDFHAQIQISDTGQGISPDFLPFIFERFRQADGSRTRSNTGLGLGLSIVRHLVEL 1213

Query: 768  HGGHVSISSSDEG-VTTINCRIPSK 791
            HGG V+  S  EG   T   R+P +
Sbjct: 1214 HGGTVAAQSPGEGLGATFTIRLPLQ 1238



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 28/289 (9%)

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
             L+ I  EL    ++  ++SN     + L  S++  +        I      +    E  
Sbjct: 731  ELNTINDELQRRNIESTQVSND---LQNLLSSINIPILMLGGDLRI----RRFTPTAERI 783

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALE--KNFCETVSTLEHGNNKSYKIVRVLNS-- 285
              +    IG         +    +     E        V  ++      Y +        
Sbjct: 784  YNLIPTDIGRPLSDINHNLNISDLEQQIQEVIGTLTFKVQEVQDNEGHWYDLRIRPYRTM 843

Query: 286  ----FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                 G   + +D+       +QL  + +    I+  +  ++ + D N  +   NRSF E
Sbjct: 844  DNKIDGAVVVLVDIDALKRSAEQLRASRDYAEAIVDTMRESLVVLDLNLRVVRANRSFYE 903

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
             ++I             + +       +P+  +         + ++  E   +   L   
Sbjct: 904  TFQIQPTETEQR----LIFDIGNGRWNIPQLRSLLEEIPPNITPFQDIEVGHNFEQLGY- 958

Query: 398  QTLHVIVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            +TL +     P+       + + E++T Q  LE +   L+  +    + 
Sbjct: 959  KTLRLNARKMPQIDDTQLILLLIEDITQQKQLEAERTQLLAQEHSAREA 1007


>gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580]
 gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580]
          Length = 593

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 172/390 (44%), Gaps = 27/390 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q+    T  N   +     +  +++GV     DG I ++NP
Sbjct: 219 ILTQDEIGELAIAFNQMGRQLKFHITALNQEKEHLSNILSSMADGVITINIDGTILVTNP 278

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +              +    +  +LF   +++  ++ + ++ TL+  
Sbjct: 279 PAERFLQAWYYEQNMN--------VKEGHELPPEARELFQNTVST--EKEQMIEMTLQGR 328

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +  +L   + PL N   +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 329 TWVLL---MSPLYNQSHVRGAVAVLRDMTEERRL----------DKLRKDFIANVSHELR 375

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +    + S   ++ +  + I   S  +  LVND+LDLA ++AG + LN
Sbjct: 376 TPISMLQGYSEAIVDD-IASSEEEKKEIAQVIYDESLRMGRLVNDLLDLARMEAGHISLN 434

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L +    V +       + NI +    D     FV D  ++ Q+ + ++ NA+  
Sbjct: 435 VEPVELREFFERVFRKFYGVAGDKNITLSHNLDLHEAKFVFDPDKMEQVLTNLIDNAIRH 494

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           ++ G TV +           +VK++GS IPE+    +F RF        R   G GLGL+
Sbjct: 495 TNAGGTVHVDVQSAESGLKIAVKDSGSGIPEEDLPFIFERFYKADKARTRGKGGTGLGLA 554

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IV++ ++ H G +++ S     T+    IP
Sbjct: 555 IVKNIVDAHNGSITVHSMLNEGTSFTFYIP 584


>gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB]
 gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1439

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 102/529 (19%), Positives = 201/529 (37%), Gaps = 22/529 (4%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
            ++ +   +      A   + + + +  +  +      I  N  V I   D  R     N
Sbjct: 417 RRTLEDTNIELELKVAKRTLALRQNQEILQKREAFFRAIFDNAAVGIISLDPERKPVLVN 476

Query: 333 RSFVELWEIDLAFLATNPSN----DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            +F +  +  +  L ++  N     E+L  +            ++ +     + K+ +T 
Sbjct: 477 PAFAKFIDQPINTLLSHLENIALPKEVLGRINDLLGQTGSAQQQSLRNEFEFIDKNGDT- 535

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
               H  + Q   V   +      +    +++ + ++E +           +D +   + 
Sbjct: 536 ----HWGDVQIAAVRDENGELDSLLITVLDVSDRREIEAELIRQFSFLQALLDTIPNPIF 591

Query: 449 VFGPDGRIKLSNPAFRSLWKTE--ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
             G +      N A+ + +     E        +  +     + Y   D   + A    S
Sbjct: 592 YKGANTHFLGCNQAYEAFFGINRREFVGKRVVDLEYLPEDTRQAYQTEDEQVIEAGSRIS 651

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            +       G L  +  SV  +          +   V++T    AER           A 
Sbjct: 652 REVSLPGADGKLHDVLYSVSGFHSPDGRPDGLIGVIVDITALKEAEREADRARATAESAA 711

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F+ ++S+E+R+P+  IIG T L   ++   LNS+Q  Y+  +  ++  LL ++ND
Sbjct: 712 AAKADFLANMSHEIRTPMNAIIGMTHLALQTE---LNSRQKNYLTKVDNAAKGLLGIIND 768

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
           ILDL+ ++AG+M   ++   L+  L  +    + K  E  + +      ++    + D  
Sbjct: 769 ILDLSKIEAGMMHFEHAPFSLDASLERLSDMCSLKARERGLELLYDIAPEVPDQLIGDSL 828

Query: 686 RLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNR 741
           RL Q+   ++ NA+ F+  G    TV L A R+N  D  F V + G  +  +    +F+ 
Sbjct: 829 RLGQVLLNLVGNAIKFTEAGEITVTVKLLANRENEVDLGFEVIDTGIGMNVEQQSQLFSA 888

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F        R   G GLGLSI +  + L GG + +SS     +    ++
Sbjct: 889 FTQADTSTTRKYGGTGLGLSICKRIVELQGGSIGVSSQPGIGSRFTFQL 937



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 112/333 (33%), Gaps = 50/333 (15%)

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
              I+L+ A E++R+  QS      T  D  I+              L L      LA  
Sbjct: 397 REVIQLAAALEEMRQHLQS---SRRTLEDTNIE--------------LELKVAKRTLA-L 438

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG---IVFQKAIG 238
               + L    + F+ +FD+    +   D     +  N ++ K  +      +   + I 
Sbjct: 439 RQNQEILQKREAFFRAIFDNAAVGIISLDPERKPVLVNPAFAKFIDQPINTLLSHLENIA 498

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKS--YKIVRVLNSFGE----AGI 291
             +++          + SA +++       ++ +G+      +I  V +  GE       
Sbjct: 499 LPKEVLGRINDLLGQTGSAQQQSLRNEFEFIDKNGDTHWGDVQIAAVRDENGELDSLLIT 558

Query: 292 AIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
            +DVS     E  +  Q +    +L  +   I     N +    N+++   + I+     
Sbjct: 559 VLDVSDRREIEAELIRQFSFLQALLDTIPNPIFYKGANTHFLGCNQAYEAFFGINRREF- 617

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQ----TLH 401
                  + + +     LPE    + ++     V ++         LP  +G+       
Sbjct: 618 -------VGKRVVDLEYLPEDT-RQAYQTEDEQVIEAGSRISREVSLPGADGKLHDVLYS 669

Query: 402 VIVTSNPRG---GTIWMFENLTVQVDLETKYNT 431
           V    +P G   G I +  ++T   + E + + 
Sbjct: 670 VSGFHSPDGRPDGLIGVIVDITALKEAEREADR 702


>gi|298241171|ref|ZP_06964978.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297554225|gb|EFH88089.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1110

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 129/771 (16%), Positives = 263/771 (34%), Gaps = 65/771 (8%)

Query: 55   VNETYSFLSEICDQLSKYHSLLTENNCLTIVWD-GKDETPEIIGQLHQRIDIPQTDTDLL 113
             +   +    + +       L+       +VW  G D   E   Q  +  D  Q   + L
Sbjct: 368  EDRKRAE-QGLKESREHLRVLVETLPQ--LVWATGPDGLTEDWNQ--RYADYFQATPEQL 422

Query: 114  SFENWLKFHHYIKLSKATE---KLRKEGQSFDLVAETQND-----CAIKIEGRVSGSCAF 165
                W +F H  +         +    G+ + +    +             G      A 
Sbjct: 423  RGYGWRQFLHPEEYDHVCAVRNRSLATGEPYAIEYRLREGQTGAYRWFLARGMPVRDEAG 482

Query: 166  LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
              +    G  +++ E     ++L +     +VL +++  LVW     G   + N  +   
Sbjct: 483  QILKWF-GTCTDIDEQKRAEQQLKSSRESLRVLAETVPQLVWATRPDGGHEYVNQRWCDY 541

Query: 226  TETEGIVFQKAIGESRKLFKEEIKK------RMISSSALEKNFCETVSTLEHGNNKSYKI 279
            T       +       +    E ++      +              +   + G  + + +
Sbjct: 542  TGLTLEQVESDCWVYLQFIHPEDREGNRAQWQQARDMGDMFEHEARLRNSQTGEYRWFLV 601

Query: 280  VR--VLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQ 329
                V +  G+     G   D+  +     QL  + E L  L   +         +   +
Sbjct: 602  RSMPVRDETGQILKWFGTCTDIEDQKRTEQQLKESRESLRVLAETVPQLVWVKRPDGQHE 661

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            + N+ + +   + L  + ++      L+F+   ++   + ++    +         E  +
Sbjct: 662  YTNQRWRDYTGLTLEQIQSDRWVH--LQFIHPDDQEGHRASF----QRALDTGAMFEYEQ 715

Query: 390  DTWHLPNGQTLHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDH 442
               H   G+    +  + P     G  I  F    N+  Q  +E       +     ++ 
Sbjct: 716  RLRHAQTGEYRWFLTRAMPMRNEAGQIIKWFGTNTNIEDQKRIEEALRQSQERASVLMNS 775

Query: 443  LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
               G+ V     +I  +N  F  +       L  G  +  +  T   Y  ++       A
Sbjct: 776  NIIGIFV-DEGEQIVDANDTFLRMTGYTREDLHAG-RLNWMHMTPPEYLAQTRQAHQELA 833

Query: 503  IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               S     K              EY          ++    +        A    N A 
Sbjct: 834  AQQSLTPYEK--------------EYVCQDGSRLPVLVCGDVLQHHPFQRIAFVLDNSAP 879

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            ++ ++ K+ F+   S+EL++PLT +   T L++       + + +  +  +      L  
Sbjct: 880  KELEQRKDDFISMASHELKTPLTALKMQTQLVRKRLERQAHHEAATALSKVEGPVKQLER 939

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LV ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      + V 
Sbjct: 940  LVGELLDVSKIQAGRLEYIRETVNLDALLHEVADTMQQISTTHTI---VVRGATSCTLVG 996

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            D+  L Q+F+ +LSNA+ +S    TV +  +         V+++G  IP +    +F RF
Sbjct: 997  DKDWLGQVFTNLLSNAIKYSPGTETVEMDLSASPETVTIRVRDHGLGIPREQRDKIFERF 1056

Query: 743  VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               A   QR   G+G+GL IV   +  HGG +++ S     +T     P K
Sbjct: 1057 YRVAGPRQRAIPGLGMGLYIVAEIVRGHGGTITVDSEVGKGSTFTVTFPKK 1107



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/405 (13%), Positives = 128/405 (31%), Gaps = 45/405 (11%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI-----SYKKNTETEGIVFQKAIGE 239
              LS +  +++ L +S+   V      G +L  N      ++ +  E  G         
Sbjct: 125 QDALSRNEQLYRELLESVADGVTIVTPEGLVLDINQRPLADAHLRREEAIGKPLTDLPAW 184

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-------NSFGEAGIA 292
           S     ++  +  I+ +A  +            +     ++ +                 
Sbjct: 185 SSDPAVQQHLRAAIAQAAQGETVRFEAHIHPRTDLSLDMLMTITCHRDASQQVEYLICAG 244

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            D+++     D+L     ++  +   + I   +  L +HN   +      +A        
Sbjct: 245 RDITERKQAEDELRP---LVDAIPHFVWIAGPDGSLTYHNHRLIAY----MAMTLERAEG 297

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-------LHVIVT 405
           D  L  +   ++   Q     W+ +I    ++   ++    L +G +       +  +  
Sbjct: 298 DGWLAGVHPDDR---QRVRAAWQTSI----QTGVPYEVELRLQDGTSGAYRWFLVRGVPQ 350

Query: 406 SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
            N +G     +    ++  +   E       +     ++ L + V   GPDG  +  N  
Sbjct: 351 RNAQGTILHWVGTCTDIEDRKRAEQGLKESREHLRVLVETLPQLVWATGPDGLTEDWNQR 410

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           +   ++    +L  G   R        Y +     +   A    +  E +  +G  +  +
Sbjct: 411 YADYFQATPEQLR-GYGWRQFLHP-EEYDHVCAVRNRSLATGEPYAIEYRLREG--QTGA 466

Query: 523 DSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
                   +P+ +      +   T  ++ +  RAE+ L    E+L
Sbjct: 467 YRWFLARGMPVRDEAGQILKWFGTCTDIDEQKRAEQQLKSSRESL 511



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 26/269 (9%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E            IL  L  A+ + D    + + N +   +       +    S      
Sbjct: 8   ERVTVASRETLLTILETLPGALLVVDDTETIVYANANAQAIIGTAREEVCGT-SLWHCAP 66

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            L S      Q   KT +    +         + W       LHV +T   +G    +F+
Sbjct: 67  HLVSTPLY--QAVRKTRQTREPTEVAYVSPVTNNW-------LHVSLTPTDKG-LALLFQ 116

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN--PAFRSLWKTEENRLS 475
                + L+   +   ++  E ++ +++GV +  P+G +   N  P   +  + EE   +
Sbjct: 117 EQLEPLPLQDALSRNEQLYRELLESVADGVTIVTPEGLVLDINQRPLADAHLRREE---A 173

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPL 533
            G  + ++ A  S   + +    L AAI  +   E    +  +   +D  L+   +I   
Sbjct: 174 IGKPLTDLPAWSS---DPAVQQHLRAAIAQAAQGETVRFEAHIHPRTDLSLDMLMTITCH 230

Query: 534 PNAQT-----MLTFVNVTDSVRAERALTE 557
            +A       +    ++T+  +AE  L  
Sbjct: 231 RDASQQVEYLICAGRDITERKQAEDELRP 259


>gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
 gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
          Length = 970

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 157/384 (40%), Gaps = 21/384 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D E            T+D ++EG+A+FGPD R+KL N     L            H+  I
Sbjct: 336 DSEGHLREQGIALTTTLDSVAEGIALFGPDDRLKLLNRRGYDLLAIPRTAEEEQWHLIQI 395

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQG--------TLELLSDSVLEYSIIPLPN 535
                   +  +        +    DE+    G                VLE    P  +
Sbjct: 396 LEWQIAQGHFEEFPP--GTPVQRLIDEQYGGLGLKHSLPVFARHRADGCVLEIRTYPSKD 453

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             T  T+ +VT+  R  RAL    EA    +  K  FV  +S+E+R+PL  ++G   LL 
Sbjct: 454 GGTTRTYTDVTERERTARALETAKEAAEAGNRAKTEFVATMSHEIRTPLNGVLGMASLLS 513

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    L+ +Q  YV  I      LL++V+DILD + ++AG + L +     +++   V 
Sbjct: 514 DT---PLDDRQRHYVGTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSVS 570

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +  K  E  + I    D         D  RL Q+   ++ NA+ F+ +G  + ++A  
Sbjct: 571 DILEPKAAEKGLAITYSEDVDFPKRSCGDPNRLRQVLWNLVGNALKFTDEG-WISIEATV 629

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
               D     +SV + G  IPE+    +F +F        RR  G GLGL+IV   +   
Sbjct: 630 VKGPDGPRLRYSVSDTGIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAF 689

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + + S     +T    IP  E
Sbjct: 690 GGELGVVSETGKGSTFWFEIPHVE 713



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 44/142 (30%), Gaps = 4/142 (2%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           + +Q       L ++   IA+F  +  L+  NR   +L  I            ++LE+  
Sbjct: 341 LREQGIALTTTLDSVAEGIALFGPDDRLKLLNRRGYDLLAIPRTAEEEQWHLIQILEWQI 400

Query: 361 SANKLPE----QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +     E        +   E    +           H  +G  L +    +  GGT   +
Sbjct: 401 AQGHFEEFPPGTPVQRLIDEQYGGLGLKHSLPVFARHRADGCVLEIRTYPSKDGGTTRTY 460

Query: 417 ENLTVQVDLETKYNTLVKVQGE 438
            ++T +        T  +    
Sbjct: 461 TDVTERERTARALETAKEAAEA 482


>gi|222085322|ref|YP_002543852.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221722770|gb|ACM25926.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 771

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 113/522 (21%), Positives = 212/522 (40%), Gaps = 46/522 (8%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL- 365
                L      +  FD      F +RS  ++  +  A        D  L F  +   + 
Sbjct: 258 RVETALSRGRCGLWDFDFASREFFWSRSMYDMLGLPAA--------DRPLSFADAERLMH 309

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH------VIVTSNPRGGTIWMFENL 419
           P+  +  T   +I                  G  +       VI T++ R   I +  ++
Sbjct: 310 PDDNSLHTLARSITRGNAGQVDQILRIRHAKGHYVWMRARAQVIRTNSGRVHMIGIAMDV 369

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q  L  +Y    +   + I+  SE   ++  + R+ + N  F+  +      L PGT 
Sbjct: 370 TEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNDHFQQAYGLPNGVLVPGTE 429

Query: 480 I-------------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG---------T 517
                         R I       ++++    L        ++ R    G          
Sbjct: 430 RAVVNAAAARPIIERRIVDPGRSNHSQTTEVQLADERWLQINERRTRDGGLVSVGTDITQ 489

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-----EALRKADEIKNSF 572
           L+   + + E     +     +     + +  +AE +    N     E    A++ K+ F
Sbjct: 490 LKRNQERLRESERRLMATINDLSASRQILERQKAELSTANTNYLAEKERAEAANKAKSEF 549

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLA 631
           + ++S+ELR+PL  I+GF+++L+    G L +S+ ++Y + I  S   LLN++NDILD++
Sbjct: 550 LANMSHELRTPLNAILGFSEILQDQMFGPLGSSRYNEYAKDIHDSGKHLLNVINDILDMS 609

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG +KL+   I L  L+ E  +  +      NI ++      +    ADR+ + QI 
Sbjct: 610 KIEAGHIKLSCEKIDLAPLIEECLRLTSIPAACKNIHVEQSISSGI-KLTADRRAMKQIL 668

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749
             +LSN++ F++ G  + ++  + +   + ++ + G  IP+     +   F  V + +  
Sbjct: 669 LNLLSNSVKFTNNGGRIAVRTRKVDDAVVLTIADTGIGIPKSALSKIGQPFEQVQSQYAK 728

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + G GLGL+I  S   LH G + I S +   T I  RIP +
Sbjct: 729 SKGGSGLGLAISRSLTLLHHGRMRIRSREGIGTVIAIRIPDR 770



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 55/161 (34%), Gaps = 14/161 (8%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             GIA+DV+++  +  +     + L +     + A  ++D+N  L   N  F + + +  
Sbjct: 362 MIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNDHFQQAYGLPN 421

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             L                  +         +  I    +S+ +      L + + L + 
Sbjct: 422 GVLVPGT----------ERAVVNAAAARPIIERRIVDPGRSNHSQTTEVQLADERWLQIN 471

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                 GG + +  ++T     + +     +    TI+ LS
Sbjct: 472 ERRTRDGGLVSVGTDITQLKRNQERLRESERRLMATINDLS 512


>gi|254417240|ref|ZP_05030985.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176046|gb|EDX71065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1359

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 159/380 (41%), Gaps = 14/380 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL-SPG 477
           +  +  +E+      +     +   ++G+  +         +P +  +   EEN L +  
Sbjct: 574 IKERKRIESLLREREERYELAVSGTNDGIWDWDILTNEVYYSPVWMRILGYEENPLLNRL 633

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPN 535
           +   +       +    D     A     +++    K   G    ++             
Sbjct: 634 SSWSDHVYPDDLHQVIEDINHHLAGQTQIYENIHRIKHRDGHYLWIATKGRCIRDRDGNP 693

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            + + T  ++TD   A+  L    E    A+  K+ F+  +S+E+R+P+  +IG T LL 
Sbjct: 694 YRLVGTITDITDKKIAQEQLKAAKEEAETANRTKSDFLAMMSHEIRTPMNAVIGMTSLLL 753

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++   L ++Q ++V+ I  SS  LL ++NDILD + +++G + L      L   + E  
Sbjct: 754 DTQ---LTAQQGEFVDIIRNSSDALLTIINDILDFSKIESGKLNLEEQPFDLRACIEESL 810

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL---- 710
           + +++K  +  I +  + D ++    V D  RL QI   ++SNA+ F+  G  VI     
Sbjct: 811 ELLSSKARDKGIELAYLMDSQIPESIVGDVTRLRQILVNLVSNAVKFTETGDVVISVTPT 870

Query: 711 -KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
            + + +     F+V++ G  I       +F  F  V  +   Q  G GLGL+I +    L
Sbjct: 871 AEISEEQIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLGLAISQRLSEL 930

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG + + S +   +T    
Sbjct: 931 MGGKMWVESEEGVGSTFYFT 950


>gi|189424785|ref|YP_001951962.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421044|gb|ACD95442.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 881

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 164/392 (41%), Gaps = 30/392 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENR 473
           M   LT +   E              D   + + +    G I   NPA  ++   + E  
Sbjct: 353 MARQLTER---EQVIRESEVRLRSITDSAQDAILMMDDQGAITFWNPAAETILGYKAEEA 409

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------VLE 527
           L    H+       +    +      F+  + +      ++  T+EL +        V+ 
Sbjct: 410 LGKDLHL-----LLAPLRYQQAFQKAFSVFVQTGRGH--AVGKTVELAAKRKDGQEIVVS 462

Query: 528 YSIIPLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            S+  +             ++T+S   +  L E   +   A+  K+ F+ ++S+E+R+P+
Sbjct: 463 LSLSAVFLNGRWYAVGLLRDITESKHYQEELLEARHSAEAANRAKSEFLANMSHEIRTPM 522

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++G   LL+ ++      +Q +Y++ +  S   LL L+NDILDL+ +++G ++L  + 
Sbjct: 523 NGVVGMAQLLRYTQ---PTREQEEYLDNLELSCKNLLELINDILDLSRIESGKLELEAAV 579

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
             L   + EV  + A+++ +  +++    D ++    V D  R  QI   +L NA+ F+ 
Sbjct: 580 FSLRSCIQEVVSNQASRIEQKGLQLLTSLDEQVPEQVVGDSLRFKQILLNLLGNAIKFTE 639

Query: 704 KGSTVI---LKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            GS  +   + + ++ G  F   V + G  + E+  + +FN F        R   G GLG
Sbjct: 640 AGSITVSGQISSRQETGCTFRLMVSDTGIGMTEETLQRIFNSFEQADSSTTRVYGGSGLG 699

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I      L GG +   S+    +     +P
Sbjct: 700 LAICRRLTELMGGRIWAESTFGKGSAFFVELP 731



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 85/272 (31%), Gaps = 29/272 (10%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV-NDQLTHT 308
           ++     A  +   +  S +  G      I R+  SF    +A  +++   V  +     
Sbjct: 319 EQASQRLASGEMQTQVASAVSGGE-----IGRLAESF--DTMARQLTEREQVIRESEVRL 371

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             I  +   AI + D    + F N +   +        A       LL  LR      + 
Sbjct: 372 RSITDSAQDAILMMDDQGAITFWNPAAETILGYKAEE-ALGKDLHLLLAPLRYQQAFQKA 430

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-----SNPRGGTIWMFENLTVQV 423
            +         +V K+ E         +GQ + V ++      N R   + +  ++T   
Sbjct: 431 FSVFVQTGRGHAVGKTVELAAK---RKDGQEIVVSLSLSAVFLNGRWYAVGLLRDITESK 487

Query: 424 DLETKY-------NTLVKVQGETIDHLSEGV-----AVFGPDGRIKLSNPAFRSLWKTEE 471
             + +            + + E + ++S  +      V G    ++ + P        + 
Sbjct: 488 HYQEELLEARHSAEAANRAKSEFLANMSHEIRTPMNGVVGMAQLLRYTQPTREQEEYLDN 547

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
             LS    +  I         ES   +L AA+
Sbjct: 548 LELSCKNLLELINDILDLSRIESGKLELEAAV 579


>gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
          Length = 945

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 171/395 (43%), Gaps = 27/395 (6%)

Query: 411 GTIWMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           G I +  +++        +++ E  Y   +  Q   +++    +           +N A 
Sbjct: 158 GQIRILGDISKAFSHTKARIEKEKVYEKDINGQSILLNNSESQIWALSNVTSYATANEAH 217

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
              +   ++ L             +   ++S+            + E K+ +G      +
Sbjct: 218 AKFFGKTKSDLEYQDLYDIFDIDTANKLSKSNWELFQKGEPAEKELEIKNFKGE-----N 272

Query: 524 SVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +L+    P  + +      + T  ++T+   AE+ L +  E    A+  K+ F+ ++S+
Sbjct: 273 RLLKIKSRPQRDDKGNIQYLICTANDITEQRLAEKELYKAKEQAEAANTAKSRFLANMSH 332

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  I GF +LL+ +   +L+ +Q +++    ++S ILL+++NDILD + ++A  +
Sbjct: 333 EIRTPMNGIFGFLELLQAT---NLSLEQKEFIREAKSASEILLHIINDILDFSKIEAKKL 389

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
            +      L + + +    +A K  E N+ +  + +  +    + D  RL Q+ + ++SN
Sbjct: 390 TMEKIKFNLRNSIEDAVSLLAPKAAEKNLELYTMINPNVPEEVIGDPSRLRQVLNNLISN 449

Query: 698 AMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           A+ F+SKG   V +   ++        F VK+ G  I ++   ++F  F        R  
Sbjct: 450 AVKFTSKGEISVKVDCLKEENKIAFLNFEVKDTGIGIRKEHINTIFKSFSQADASTTRKY 509

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            G GLGL+I    + + GG + + S     +T   
Sbjct: 510 GGTGLGLAISSELVKMMGGKIQVESIVGEGSTFKF 544


>gi|206890531|ref|YP_002249149.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742469|gb|ACI21526.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 890

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 155/342 (45%), Gaps = 15/342 (4%)

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           AF SL       L     IR   +      +     ++ + II    DE  +L  T   +
Sbjct: 197 AFASLLAIFITNLVVSKFIRKPLSNLVDATHRFAKGEM-STIIKYPPDEIGTLTETFNYM 255

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + V + S + L    T    + + +       L + N+ L++ D +K++F+ ++S+ELR
Sbjct: 256 VNEVAK-SKMELEKELTRRAKL-LEERDELVALLQKANKQLKELDTLKSAFIANMSHELR 313

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  IIG+TDLL     G LN  Q   ++ ++A++  LL L+ND+LD++ +++G ++L+
Sbjct: 314 TPMNAIIGYTDLLLDEVDGPLNDDQKTSLKKVAANARHLLQLINDVLDISKIESGKIELH 373

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              I L +L++ +  +    + +  +   +  +        D  +  QI   ++SNA+ F
Sbjct: 374 PREIDLKELIDGIMVTFEPLIAKKGLSFTLNIESGAEKLYVDEDKTKQILINLISNAVKF 433

Query: 702 SSKGSTVILKAARDN---------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQ 750
           + +G  + +KA                  SV + G  I  +    +F++F         Q
Sbjct: 434 THQGG-ITIKAKVSERGKAKDGSPQFIEISVSDTGIGIKREDLDKIFDKFAQADVSTTRQ 492

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGLSIV   + LH G V   S     +T    +P K+
Sbjct: 493 YEGTGLGLSIVRGLVALHKGMVWAESEVGKGSTFYVLLPFKK 534


>gi|110633259|ref|YP_673467.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110284243|gb|ABG62302.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 774

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 208/510 (40%), Gaps = 65/510 (12%)

Query: 338 LWEIDLAF--LATNPSNDELLEFLRSANKL----------PEQLNWKTWKENIFSVYKSS 385
           LW+ D+A   +  + S  E+L +  +   L          P+  +       I +     
Sbjct: 267 LWDWDMARGKMYWSASMYEMLGYEAADVMLSFGDVASLLHPDDSDLFAVANRIVAREVEQ 326

Query: 386 ETHKDTWHLPNGQTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                     NGQ + +   +       P    I +  ++T Q  L  +     +     
Sbjct: 327 VDQVFRMRHANGQWIWIRARAQVVDPDAPEIHLIGIAVDVTEQRTLVQQSEAADQRLRTA 386

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           I++++E   ++    R+ + N  +      + + + PG   + I +              
Sbjct: 387 IENITESFVLWDASERLVMCNSRYLQDTGLDPSEIVPGLPRQEIESRMK--------ATR 438

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +   +T  ++  + +    +L     L+ + +   +  T+    ++T   + +  L E  
Sbjct: 439 YERRLTGSNNASEGITYERQLADGRWLQVTELKTRDGGTVSVGTDITQLKQHQEKLVESE 498

Query: 560 EALRKA-----------------------------------DEIKNSFVQHVSYELRSPL 584
             L                                      +  K+ F+ ++S+ELR+PL
Sbjct: 499 RRLMATIHDLSLARRAEQERGQELVELNRKYMRETERAESANRAKSEFLANMSHELRTPL 558

Query: 585 TNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             IIGF++L++    G L + +  +YV  I +S T LL ++NDILD++ ++AG   ++  
Sbjct: 559 NAIIGFSELMQQGLFGPLGSERYQEYVNDIYSSGTYLLGVINDILDMSKIEAGQFSIHRE 618

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           +I L++++ E  + +  +  + NI +       L S  ADR+ + QI   +L NA+ F+ 
Sbjct: 619 SIDLSEVIRETMRVVTLQAGKKNIELTSDVPASL-SLHADRRAVKQILINLLFNAVKFTG 677

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
           +G  V L+A   +   + ++K+ G  IP +  K +   F    +       G GLGL+I 
Sbjct: 678 QGGRVTLRARVVSNSLMLTIKDTGCGIPREALKKLGRPFEQVENQYSRSHNGSGLGLAIS 737

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            S   LHGG + I S++   T ++ R+P +
Sbjct: 738 RSLTELHGGALRIRSTEGVGTIVSIRLPVQ 767



 Score = 41.5 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 68/204 (33%), Gaps = 9/204 (4%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           + L GI  ++ E     ++        +   +++       D +  ++  N  Y ++T  
Sbjct: 357 IHLIGIAVDVTEQRTLVQQSEAADQRLRTAIENITESFVLWDASERLVMCNSRYLQDTGL 416

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN-SFG 287
           +       +       + +  +     +             +  + +  ++  +     G
Sbjct: 417 DPSEIVPGLPRQEIESRMKATRYERRLTGSNNASEGITYERQLADGRWLQVTELKTRDGG 476

Query: 288 EAGIAIDVSKEITVNDQL----THTYEILHNLTVA-IAIFDQNRYLQFHNRSFVELWEID 342
              +  D+++     ++L          +H+L++A  A  ++ + L   NR ++   E  
Sbjct: 477 TVSVGTDITQLKQHQEKLVESERRLMATIHDLSLARRAEQERGQELVELNRKYMRETERA 536

Query: 343 LAFLATNPSNDELLEFLRSANKLP 366
            +    N +  E L  +    + P
Sbjct: 537 ES---ANRAKSEFLANMSHELRTP 557


>gi|146338894|ref|YP_001203942.1| hypothetical protein BRADO1833 [Bradyrhizobium sp. ORS278]
 gi|146191700|emb|CAL75705.1| conserved hypothetical protein; putative sensor histidine kinase
           with a response regulator receiver domain
           [Bradyrhizobium sp. ORS278]
          Length = 787

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 89/438 (20%), Positives = 177/438 (40%), Gaps = 47/438 (10%)

Query: 394 LPNGQTLHVIVTSNPRGGTIWMF-------ENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            P+G+   + + ++P       F       +++T +   E   +   ++  + I+ L++G
Sbjct: 188 RPDGEIRWIRIVADPIDDVDGRFRERFGIVQDITERKQAEVAADQAQQLLLDAIEALTKG 247

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
             +F  D R  LSN  FR ++      + PG    ++      +       D F   +  
Sbjct: 248 FVLFDKDDRFVLSNTRFREMFPGWATLMRPGISFTDLMRKAHDHGLVRPKGDGFEDWLER 307

Query: 507 FD-----------------------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                                    D R S  GT+ L++D     ++      +      
Sbjct: 308 KRAWHLGGSRMIEHREINGRWIQSVDHRISDGGTVCLVTDITAFKTVQAELEQKLAYVQA 367

Query: 544 NVTDSVRAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +D    +R L      LR A +        K+ F+  +S+E+R+PL+ ++G  DLL+ 
Sbjct: 368 IRSDLEEQKRELEATGAELRAARDAAEAANRAKSDFLAIMSHEIRTPLSGMVGMVDLLRG 427

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   SLN +Q +Y      S+ +LL ++NDILD + ++AG +K       +  L+     
Sbjct: 428 T---SLNDEQKRYTSLAKESADLLLQVINDILDFSKLEAGKLKSECIDFDVPSLVESAVS 484

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  K     + +KV     L  ++  D  R+ Q+   ++ NA+ F+ +G+  +  + R+
Sbjct: 485 FMGEKARRRGLDLKVSFAPGLPQYLEGDPTRIRQVMLNLVGNAIKFTEQGAIEVHASHRE 544

Query: 716 NG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
                 D    V ++G  + +++   +F+ FV        +  G GLGL+I +    + G
Sbjct: 545 LDDGAVDLRIEVIDSGIGMSQEIQAQIFDPFVQADTSISRKYGGSGLGLAICKQLCAIMG 604

Query: 770 GHVSISSSDEGVTTINCR 787
           G + + S     +     
Sbjct: 605 GSIGVESEPGRGSRFWFE 622



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 37/303 (12%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           + A     +L     +LA+TT    +      +   +    D  VW              
Sbjct: 88  AQARAMTQALTRQNEQLAQTTKLLNEAQRIGRLGHWMTAEGDAAVWSE------------ 135

Query: 222 YKKNTETEGIVFQKAIGES-------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
             +  E  G+    ++  S        +     I+ R  +         +       G  
Sbjct: 136 --ELFEITGLEPLSSVSFSKMIEIIHPEDVGTYIRARDRTLKTGCALKQDLRVIRPDGEI 193

Query: 275 KSYKIVRVLNSFGEA------GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQ 324
           +  +IV       +       GI  D+++            ++L      LT    +FD+
Sbjct: 194 RWIRIVADPIDDVDGRFRERFGIVQDITERKQAEVAADQAQQLLLDAIEALTKGFVLFDK 253

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYK 383
           +      N  F E++      +    S  +L+        + P+   ++ W E   + + 
Sbjct: 254 DDRFVLSNTRFREMFPGWATLMRPGISFTDLMRKAHDHGLVRPKGDGFEDWLERKRAWHL 313

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV----QVDLETKYNTLVKVQGET 439
                 +   + NG+ +  +      GGT+ +  ++T     Q +LE K   +  ++ + 
Sbjct: 314 GGSRMIEHREI-NGRWIQSVDHRISDGGTVCLVTDITAFKTVQAELEQKLAYVQAIRSDL 372

Query: 440 IDH 442
            + 
Sbjct: 373 EEQ 375


>gi|332702803|ref|ZP_08422891.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552952|gb|EGJ49996.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 784

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 120/639 (18%), Positives = 249/639 (38%), Gaps = 71/639 (11%)

Query: 189 SNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           S   + ++ LF ++   ++  R + G IL  N +           F        ++   +
Sbjct: 14  SESEARYRTLFRAVSDSLFVVRQRDGRILDVNEAAVAQYGYSREEF-------LEMHNVD 66

Query: 248 IKKRMISSSALEKNFCETVSTLEHG--NNKSYKI------VRVLNSFGEAGIAIDVSK-- 297
           +    + ++    +  E +    H   +  ++ +      V++           D+S+  
Sbjct: 67  VSVEPVMTTEATLSVRERIPLRYHRRKDGTAFPVEITAKTVQLNAETLIVSSTRDISERQ 126

Query: 298 --EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN-RSFVELWEIDLAFLATN----- 349
             E  + D     +  +  +     I D+     + N  +  ++      +L  +     
Sbjct: 127 RMEDALRDSEQRFHAFMDTIPAPAWITDEQHRYLYINKPTMEQMGGRREDYLGRSAWDVF 186

Query: 350 PSNDELLEFLRSANK-------LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           P  ++L  ++  A +       L E+ ++     ++    +         H  +G  L  
Sbjct: 187 PIEEQLNSYMEHARRAMQAGHPLREEADYPLTDGSLRRWVRYIFPI----HTADGHRL-- 240

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                  GG  +   +++ +   E    T  +      ++ S G+    P GR   +NPA
Sbjct: 241 ------IGGVAF---DISERKRTEDALRTSEEKLRSIFENSSLGIFRSTPQGRFLEANPA 291

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
             S+        SP   IR +    S+ Y   +  D    ++     +  + +  +   S
Sbjct: 292 TASILGYS----SPEESIREVKDIGSQVYVNPEQRDAIMRMLLEERRQHVTTEIQVRHKS 347

Query: 523 DSVLEYSII--PLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
            S+L   I   P+ +      +      ++T+ VR ER L     A   A+  K+ F+  
Sbjct: 348 GSILTLRINMHPVWDENGRPRYLEGFVEDMTERVRMERELRAAKSAAEAANLAKSEFLAT 407

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  I+G  ++    +    +   +Q +  +  S+  LL+++ DILD + ++A
Sbjct: 408 MSHEIRTPMNGILGMVEVAMRQE---PSPAVTQSLRLVRQSARALLDIIGDILDFSRIEA 464

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKI 694
           G M+      +L +LL      +A    +  +R+ K I+     + + D   L Q+   +
Sbjct: 465 GKMERKEQRFLLRELLRPTLDLLAQTAVDKGLRLSKHIARDVPEALLGDAASLRQVLVNL 524

Query: 695 LSNAMDFSSKGST---VILK--AARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           L NA+ F+ +G     V L   +A+D+G     F+V ++G  IPED  +++F  F     
Sbjct: 525 LGNAIKFTHEGEVALDVDLAEPSAKDSGYVRLRFTVSDSGIGIPEDKLQTIFEPFGQLDG 584

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                G GLGLSI    + L GG + + S+    +  + 
Sbjct: 585 -ASYAGTGLGLSISAKLVALLGGRLEVRSTPGKGSRFSF 622



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 102/316 (32%), Gaps = 39/316 (12%)

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           RK+G +F           ++I  +     A   I+S      +++E       L +    
Sbjct: 92  RKDGTAF----------PVEITAKTVQLNAETLIVSST---RDISERQRMEDALRDSEQR 138

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--EGIVFQKA-----IGESRKLFKEE 247
           F    D++    W  D+    L+ N    +      E  + + A     I E    + E 
Sbjct: 139 FHAFMDTIPAPAWITDEQHRYLYINKPTMEQMGGRREDYLGRSAWDVFPIEEQLNSYMEH 198

Query: 248 IKKRMISSSALEKNFCETVS--TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
            ++ M +   L +     ++  +L       + I          G+A D+S+     D L
Sbjct: 199 ARRAMQAGHPLREEADYPLTDGSLRRWVRYIFPIHTADGHRLIGGVAFDISERKRTEDAL 258

Query: 306 THTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             + E    I  N ++ I            N +   +        +   S  E+ +    
Sbjct: 259 RTSEEKLRSIFENSSLGIFRSTPQGRFLEANPATASILGYS----SPEESIREVKDIGSQ 314

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIWM-- 415
               PEQ +       +    +   T +      +G  L + +  +P     G   ++  
Sbjct: 315 VYVNPEQRD--AIMRMLLEERRQHVTTEIQVRHKSGSILTLRINMHPVWDENGRPRYLEG 372

Query: 416 -FENLTVQVDLETKYN 430
             E++T +V +E +  
Sbjct: 373 FVEDMTERVRMERELR 388


>gi|288554580|ref|YP_003426515.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
 gi|288545740|gb|ADC49623.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
          Length = 607

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 92/393 (23%), Positives = 157/393 (39%), Gaps = 26/393 (6%)

Query: 401 HVIVTSNPR-GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V S    G   + F +LT ++ D         K     + H+++GV     DG I L
Sbjct: 228 QVTVYSTDEIGQLAYSFNDLTHKLQDATATRAREQKKLSSVLAHMTDGVLATDQDGHIIL 287

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N     L   +   +     I+++     R     +  DLF    +   D     Q  L
Sbjct: 288 MNKRAEELLGVQSYEV-----IKSLLPEVLRLPETYELEDLFEQTDSILLDFSDDEQEFL 342

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              + SV++    P+    T+L  V   +                K ++ +  FV +VS+
Sbjct: 343 IEANFSVIQEEDGPINGLITVLHDVTEQE----------------KIEQDRREFVANVSH 386

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT +  + + L+   L        ++V      +  ++ LVND+L L+ +D+   
Sbjct: 387 ELRTPLTTMKSYLEALEDGALDE-PELARRFVGVTQNETERMIRLVNDLLQLSKIDSHDY 445

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L  + +     L+EV           +I       G       D+ +L Q+   I+SNA
Sbjct: 446 RLQLTWVDFGQFLHEVIDRFEMVAQGRDIHFTRHISGHPTYVEVDKDKLTQVIDNIISNA 505

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           M +S +G  +         +   S+ + G  IP +    +F+RF        R   G GL
Sbjct: 506 MKYSPEGGNITTTLMHQGHNVRVSISDEGMGIPRENQSKIFDRFYRVDKARARSIGGTGL 565

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I +  ++ HGG + +SS     TTI   +P
Sbjct: 566 GLAIAKELVHAHGGEIWVSSEYGSGTTIYFTLP 598



 Score = 44.9 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 22/162 (13%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              T   +      +L ++T  +   DQ+ ++   N+   EL  +         S + + 
Sbjct: 254 ATATRAREQKKLSSVLAHMTDGVLATDQDGHIILMNKRAEELLGVQ--------SYEVIK 305

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             L    +LPE    +   E   S+    S+  ++     N   +       P  G I +
Sbjct: 306 SLLPEVLRLPETYELEDLFEQTDSILLDFSDDEQEFLIEANFSVIQ--EEDGPINGLITV 363

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
             ++T Q  +E            +  T +      ++ L +G
Sbjct: 364 LHDVTEQEKIEQDRREFVANVSHELRTPLTTMKSYLEALEDG 405


>gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 537

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 99/395 (25%), Positives = 177/395 (44%), Gaps = 25/395 (6%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGR 455
           G+ + VI T +  G    +   +  Q++      +  K + +TI   + EG+ V    G 
Sbjct: 162 GRRIPVI-TRDEVGELARVMNEMASQIERNLARISAEKNRLDTILRGMGEGLMVSDAGGT 220

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           + L NPAF  L+   ++    G  I  IA          +  + F A+++S  +  + + 
Sbjct: 221 VTLVNPAFLELFGLTQSV--EGRQIIEIARF-------PELHETFRAVVSSRSEHVEEM- 270

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
            TL L  +  +    +PL             D +R   A+      L++ + ++  FV +
Sbjct: 271 -TLPLGDEKQVLTHWVPL----------MEEDELRGVVAVFHDISDLKRLEVVRRDFVAN 319

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+P+T I G+ + L    +     +  +++E I + S  L +L+ D+L L+ +++
Sbjct: 320 VSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSERLADLIRDLLTLSQLES 379

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++L  + I L+  ++     +  K     I I + +       +AD  RL Q+   ++
Sbjct: 380 GGLQLELTQIHLDRAVSHAAGLLEQKAARKEIVIDISALAGAPPVLADPGRLEQVLINLM 439

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRG 753
            NA+ ++  G T+ L A   +G    SV + G  IP      +F RF     A      G
Sbjct: 440 DNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLPRIFERFYRVDAARSRDEGG 499

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGLSIV+  I LHGG +++ S     TT    +
Sbjct: 500 TGLGLSIVKHIIQLHGGSITVESEHGKGTTFRFTL 534



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 21/138 (15%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             ++ +      IL  +   + + D    +   N +F+EL+ +  +              
Sbjct: 192 ARISAEKNRLDTILRGMGEGLMVSDAGGTVTLVNPAFLELFGLTQS-------------- 237

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP------RGGT 412
                ++ E   +    E   +V  S   H +   LP G    V+    P        G 
Sbjct: 238 -VEGRQIIEIARFPELHETFRAVVSSRSEHVEEMTLPLGDEKQVLTHWVPLMEEDELRGV 296

Query: 413 IWMFENLTVQVDLETKYN 430
           + +F +++    LE    
Sbjct: 297 VAVFHDISDLKRLEVVRR 314


>gi|332704672|ref|ZP_08424760.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 939

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 103/576 (17%), Positives = 220/576 (38%), Gaps = 37/576 (6%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           LF   + +R+             V+  E    +  +I R+   FG A   I   +     
Sbjct: 221 LFTSGLTRRLRGLEESAGRLERGVALEEPSPAR-DEIGRLAGHFGNAARRIQKREAELQQ 279

Query: 303 DQ-------------LTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLAT 348
            +                   I+  L   + I D  + +++  +R  +E    + A L  
Sbjct: 280 ARNEAEKRAAEAEEGRRTLEAIMEYLPEGLVIADAPDVHIRMASRYALEFSGGEQAKLLD 339

Query: 349 NPS--NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
            P   +    +   +  ++P     +          +  E   +     +G+ L + V +
Sbjct: 340 IPEVLHSSRWKIFDADCQMPMDT-RELPLTKAVREGRVVEGGSNCMEDKSGRRLPMHVNA 398

Query: 407 NPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            P         G I +F +++     E             +++    +A+F    R   +
Sbjct: 399 GPIRDRQGNVIGGIVVFRDISDIRQAEEALRRSEGQLRLFVENAPVAIAMFDTQMRYIEA 458

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           +  + + +      L   +H          ++ +     L  A+  +  D  +   G+++
Sbjct: 459 SQRWLNNFNLVRQGLRGRSHYETFPE-LPEHWKQVHRRSLAGAVEGADADRFERADGSVQ 517

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                   +   P      ++   +VT++V+   AL +  +    A++ K+ F+ ++S+E
Sbjct: 518 WTRWETRPWYTAPGVIGGIIIFSEDVTEAVQIREALRQAKQEADAANKAKSEFLANMSHE 577

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  I+G  +L     L   +      +E    S+  LL+++NDILDL+ ++AG ++
Sbjct: 578 IRTPMNGIMGMIELAL---LKDPSCPARGNLELAQKSAHHLLDIINDILDLSKIEAGKLE 634

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
           L    +VL  ++ +V  +++       + +    +  +    + D  RL Q+   ++ NA
Sbjct: 635 LKSRPLVLRRIVEDVVGTLSLAASRKGVSMHHYIESDVPERLMGDEMRLRQVLMNLVGNA 694

Query: 699 MDFSSKGST---VILKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQR 751
           + F+ +G     V      D G     F+V + G  IPE+    +F  F       + + 
Sbjct: 695 VKFTHEGRILVNVETVLRTDGGRICLRFTVSDTGIGIPEERLGDIFESFSQANIETQTKY 754

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            G GLGL+I +  + L GG VS+ S+    ++    
Sbjct: 755 GGTGLGLTISKLLVELMGGEVSVRSTPGHGSSFTFT 790


>gi|186682409|ref|YP_001865605.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186464861|gb|ACC80662.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1080

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 137/816 (16%), Positives = 274/816 (33%), Gaps = 96/816 (11%)

Query: 47  QRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL-----TIVW----------DGKDE 91
              +L +   E    ++E   QL + ++ L E+         + W          D  + 
Sbjct: 146 TEAALQRANQELEQRVAERTAQLEQVNTALRESEERNQLAMEVAWMFTFEWEPNLDTIER 205

Query: 92  TPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE----T 147
           +P+    L  +    Q DT    F+  +      +     + L  E  ++ +        
Sbjct: 206 SPQSASILGLKSPSAQQDTGTSYFQR-VHPDDRDRFLAGLQALAPENSTYKITYRFVRPD 264

Query: 148 QNDCAIKIEGRVS--GSCAFLRILSLDGIYSEL----AETTLKCKKLSNHISVFKVLFDS 201
                ++  GR    G     RI+ +    +E     AE       L   ++  + ++ S
Sbjct: 265 GQIVILEESGRALFDGQGQLTRIIGMTADVTERQQLEAELQESRATLHRQLTEIETIYQS 324

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE---------------------- 239
               +   D     +  N    +  E  G   ++ IG                       
Sbjct: 325 APIGLNVLDTDLRFVRINQ---RLAEINGFSVEEHIGRTIRELLPNIADTVEELLCAILE 381

Query: 240 -SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKE 298
               L   EI+    +   +++ + E+   L+ G+             G   +  D++++
Sbjct: 382 TGEPLLNVEIRGETPARPGVQRVWLESFLPLKDGDR----------VIGINTVCEDITEQ 431

Query: 299 ITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWE------IDLAFLAT 348
           I V + L  + E   ++       + + D   Y  + ++S+ E         +   +L  
Sbjct: 432 IQVEEALRQSEERFRSMADNALVMVWVTDATGYCTYLSQSWYEFTGQTEATGLGFGWLDA 491

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
               D    F R      E       +   F            +                
Sbjct: 492 LHPED--CAFAR------ETFVSSNTRHEAFRAEYRLRRRDGEYRWAIDAASPWFGADRQ 543

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             G I    ++T +   E             I     G   +         +   ++++ 
Sbjct: 544 YKGYIGSVIDITDRKQAEEALRESEDRLRMAITSAQLGTWDWNLITGELRWDTGCKAMFG 603

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF-DDERKSL------QGTLELL 521
              +  S             R   +         ++  F D E +++      +  L   
Sbjct: 604 LSPDGESSIELFFEGLHPDDRDRLQEIVQAALNPVLGGFYDTEYRTIGIEDKVERWLRAK 663

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVS 577
             +  +    PL  + T+L       +      L        EA  +A+ +K+ F+  +S
Sbjct: 664 GQAYYDAKGKPLRFSGTVLNITEQKQAEAQREQLLRQEQAAREAAERANRMKDEFLAVLS 723

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  I+G+  LL++  + S   K  Q +  I  ++   + LV D+LD++ +  G 
Sbjct: 724 HELRTPLNPILGWAKLLQSPLVSS--DKLQQGLSAIERNAKQQVQLVEDLLDISRIIRGK 781

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + L++  I L++ +    +++        I+++V+ D  +G    D  RL Q+   +LSN
Sbjct: 782 LTLSFGAIDLSEPIAAALETVRLAAEAKAIQLEVLLDPSVGQVRGDADRLQQVVWNLLSN 841

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           A+ F+S G  V ++    +      V + G  I  +    VF  F        R   G+G
Sbjct: 842 AIKFNSTGGWVTVQLTSVDRHAQIQVSDTGKGIQPEFLPHVFELFQQQDSSSTRSFGGLG 901

Query: 756 LGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
           LGL+I    +  HGG ++  S+ EG   T   ++P 
Sbjct: 902 LGLAIARQVVEAHGGTITAVSAGEGLGATFTVQLPL 937



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 107/353 (30%), Gaps = 68/353 (19%)

Query: 262 FCETVSTLEHGNNKSYKIVRVLN--SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
           + E     ++G  +                 +A D++++      L    + L       
Sbjct: 105 YFENRYRTKNGCYRWLAWTASPQIDRGVMYCVARDMTQQKETEAALQRANQELEQ----- 159

Query: 320 AIFDQNRYLQFHNRSFVEL-----WEIDLAFL---ATNPSNDELLEFLRSANKLP----- 366
            + ++   L+  N +  E        +++A++      P+ D +    +SA+ L      
Sbjct: 160 RVAERTAQLEQVNTALRESEERNQLAMEVAWMFTFEWEPNLDTIERSPQSASILGLKSPS 219

Query: 367 -------------EQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVI--VTSNPR 409
                           +   +   + ++   + T+K T+    P+GQ + +     +   
Sbjct: 220 AQQDTGTSYFQRVHPDDRDRFLAGLQALAPENSTYKITYRFVRPDGQIVILEESGRALFD 279

Query: 410 G-----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHL-------SEGVAVFGPDGRIK 457
           G       I M  ++T +  LE +           +  +         G+ V   D R  
Sbjct: 280 GQGQLTRIIGMTADVTERQQLEAELQESRATLHRQLTEIETIYQSAPIGLNVLDTDLRFV 339

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE------SDGWDLFAAIITSFDDER 511
             N     +          G  IR +    +    E        G  L    I      R
Sbjct: 340 RINQRLAEINGFSVEE-HIGRTIRELLPNIADTVEELLCAILETGEPLLNVEIRGETPAR 398

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNVTDSVRAERALTEKNE 560
             +Q         V   S +PL +   ++       ++T+ ++ E AL +  E
Sbjct: 399 PGVQ--------RVWLESFLPLKDGDRVIGINTVCEDITEQIQVEEALRQSEE 443


>gi|117926521|ref|YP_867138.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610277|gb|ABK45732.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1027

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 123/688 (17%), Positives = 264/688 (38%), Gaps = 48/688 (6%)

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD---GIYSELAETTLKCKKLSNHIS 193
           +G+  D+      +    ++G ++G  A L + +L       + L E      +L   I 
Sbjct: 192 QGEEDDIELFKDGERIFGVDGHLNGRQAQLYMPTLGITLRYTAHLGEIYSHRDRLLARIK 251

Query: 194 V--FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
           +     L  +   + W     G +L+     +     +      A GE R L  E  ++ 
Sbjct: 252 MIGLAALLLAGSGVFWM----GRVLFV----RPLQRLKERTTHLANGEVRDLLNEVRRRV 303

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
           M+       +  + ++        S +  +                ++   +   LT   
Sbjct: 304 MVRELQELTDQFDVMALQVSSARTSLEEKVHERTAQLEWELEERHKTEH-RLRQVLTLQT 362

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL---EFLRSANKLP 366
            IL +   +I   D+   +Q  N+    +       +    + D      E  + + +L 
Sbjct: 363 AILDSANSSIISTDRTGIVQTFNKGAERMLGYKAVAVVGQYTLDMFYNSNELRQHSLQLS 422

Query: 367 EQLNWKT--WKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNP-------RGGTIWM 415
             L+ +     E++F + +  +  +  W +   +G  + V++T  P         G + M
Sbjct: 423 ATLDKRVDPGIESLFVLAREGKVDEREWMILHQDGHQVPVLMTVTPIYNSSGLLVGYLNM 482

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
              ++ +  L  +           +D    G   +         N     ++   +   +
Sbjct: 483 GTEISERKRLAAELKETNWRLQRALDSAQAGTFYYAVVHDHMQWNRRALEMFGLNDATFN 542

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIP 532
              H+++         +      LFA ++ + + E   +  T+    D    V+      
Sbjct: 543 --GHLQDWLQRVVA-VDRHRIDTLFAEVLATPNVETLDISYTILRQGDEAQRVIRTQGWI 599

Query: 533 LPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             +     T +     ++T+ ++A++ L E  +A  +A + K+ F+  +S+E+R+P+  +
Sbjct: 600 HRDPHGKATHLSGLFLDITEQMQAQQVLEEARQAAEEASQAKSDFLASMSHEIRTPMNAV 659

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG +D+L  +    LN +Q  YV  +  +S  LL+L+N ILDL+ +++G  +L      L
Sbjct: 660 IGLSDVLAET---PLNPEQQHYVTTLQRASHTLLDLINAILDLSKIESGRFELIERPFDL 716

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG- 705
           +D+ + V   +  +  +  + + +  D  L    V D  RL QI   ++ NA+ F+ +G 
Sbjct: 717 SDMAHGVCSVLRVQAEQKGLSLALEMDETLPPFVVGDSPRLRQILINLIGNAIKFTEQGF 776

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
             V ++A        F + ++G  I     + +F +F         +  G GLGL+I + 
Sbjct: 777 VKVSVQARDQQRTLWFGIADSGVGIAPTQVEQIFEKFTQVDSSVVRRFAGSGLGLAISKQ 836

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            + L GGH+ + S     +     +P +
Sbjct: 837 LVGLMGGHIGVESRLGEGSLFYFSLPLR 864


>gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6]
 gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1306

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 153/387 (39%), Gaps = 21/387 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + L  +   E             ++ +++       + R    N     L      +L
Sbjct: 515 LQQELAERSRTEAALRESTTQISRILESITDAFFAVDSNWRFTYVNQESERLLGKPREQL 574

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   I       + +  G D+      +   +      T     +   E    P P
Sbjct: 575 --------IGQDFWSIFPKPLGVDMEPNHRYALKTQTTLQFETYTPQYERWFEVRDYPSP 626

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   +    ++T        L E  EA   A   K+ F+  +S+E+R+P+  +IG T LL
Sbjct: 627 DGLAIYLR-DITAQKHTHMELVEAKEAAEAATRAKSDFLATMSHEIRTPMNAVIGMTGLL 685

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    LN++Q  +VE I  S   LL ++NDILD + +++G  +L      L D L   
Sbjct: 686 LDT---PLNAEQRDFVETIRNSGDALLTIINDILDFSKIESGKFELEQQPFDLRDCLEAA 742

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712
              ++ +  E  I +  +    +  +   D  R+ QI   +L+NA+ F+  G  V+ ++ 
Sbjct: 743 LDLVSARAAEKQIDLAYMIARNVPQAIEGDVTRVRQILVNLLANAVKFTPAGEVVVMIEG 802

Query: 713 ARDNG---DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
            R      +   +V++ G  IP D    +F  F  V  +   Q  G GLGL+I +    L
Sbjct: 803 RRIRDQLFEVHIAVRDTGIGIPADRLNRLFKAFSQVDASTTRQYGGTGLGLAISQRLCAL 862

Query: 768 HGGHVSISSSDEGVTTINCRI--PSKE 792
            GG + + S+    +T +  I  P+ E
Sbjct: 863 MGGRMWVESTVGVGSTFHFTIIAPAAE 889



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 48/148 (32%), Gaps = 4/148 (2%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           +   A   +   + +  ELAE +     L    +    + +S+    +  D      + N
Sbjct: 501 AAGQALANVQLTNALQQELAERSRTEAALRESTTQISRILESITDAFFAVDSNWRFTYVN 560

Query: 220 ISYKKNT--ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
              ++      E ++ Q       K    +++     +   +        T +    + +
Sbjct: 561 QESERLLGKPREQLIGQDFWSIFPKPLGVDMEPNHRYALKTQTTLQFETYTPQ--YERWF 618

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQL 305
           ++    +  G A    D++ +   + +L
Sbjct: 619 EVRDYPSPDGLAIYLRDITAQKHTHMEL 646



 Score = 45.7 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 11/142 (7%)

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           L +  +  +A     E  + +  T    IL ++T A    D N    + N+    L    
Sbjct: 511 LTNALQQELAERSRTEAALRESTTQISRILESITDAFFAVDSNWRFTYVNQESERLLGKP 570

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              L          + L       E  +    K      +++     + W         V
Sbjct: 571 REQLIGQDFWSIFPKPL---GVDMEPNHRYALKTQTTLQFETYTPQYERW-------FEV 620

Query: 403 IVTSNPRGGTIWMFENLTVQVD 424
               +P G  I++  ++T Q  
Sbjct: 621 RDYPSPDGLAIYL-RDITAQKH 641


>gi|298505397|gb|ADI84120.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 772

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 92/496 (18%), Positives = 190/496 (38%), Gaps = 37/496 (7%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +  +    I I D   +    N +            A   + DE L        L  
Sbjct: 41  YRALFEHAIDGIFIMDAEGHYLDVNPAICS---------AIGYTRDEFLAL--DWGVLSR 89

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSN--PRGGTIWMFENLTVQV 423
            ++   W     +     E  ++   +   NG  L V ++++  P G  + +  +++ + 
Sbjct: 90  GVD-SGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDVSERK 148

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +E    +  +     +D     + +   DG ++L+N A+           + G  +  +
Sbjct: 149 RMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERETGI-PRNAAVGRRLNEL 207

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QT 538
                          +  +  T+  DE       +      V      PL +A       
Sbjct: 208 FPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGV-----RVFHTIKFPLRDAAGGVVDV 262

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +++TD  + E  L   + A   +   K  F+ ++S+E+R+P+  +IG  +LL+ + 
Sbjct: 263 GGISIDITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRET- 321

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q +Y E    S+  +L ++N +LD + +++  + L      + + +    +  
Sbjct: 322 --DLDPRQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPF 379

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
                   + +       +  + V D  R  QI + ++ NA+ F+ +G+ TV L AA  +
Sbjct: 380 RAVAARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQGAITVQLGAAAVD 439

Query: 717 G---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
               D   SV + G+ I  +   ++F+ FV       R   G GLGL+IV   +    G 
Sbjct: 440 DCRIDVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGV 499

Query: 772 VSISSSDEGVTTINCR 787
           +S++S     +T + R
Sbjct: 500 ISVASEPGMGSTFSFR 515



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 26/255 (10%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE--SRKLFKEEIKK 250
           S ++ LF+     ++  D  G  L  N +           F        SR +       
Sbjct: 39  SGYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAA 98

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-GIAIDVSKEITVNDQLTHTY 309
            +      E    E      +G+  + ++   L   G+  GIA DVS+   + + L  T 
Sbjct: 99  SLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDVSERKRMEESLRSTS 158

Query: 310 EILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           E L  +     + I I   +  L+  N ++     I        P N  +   L   N+L
Sbjct: 159 EFLDTILDEAPLPIYITSVDGTLRLANNAWERETGI--------PRNAAVGRRL---NEL 207

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-----SNPRGGTI---WMFE 417
                   + E    V +S+ T      L  G  + V  T      +  GG +    +  
Sbjct: 208 FPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGVRVFHTIKFPLRDAAGGVVDVGGISI 267

Query: 418 NLTVQVDLETKYNTL 432
           ++T +  +E +    
Sbjct: 268 DITDRSKMEGELRAA 282



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 14/148 (9%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           GI  +++E     + L +       + D     ++     G +  AN ++++ T   GI 
Sbjct: 139 GIARDVSERKRMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERET---GIP 195

Query: 233 FQKAIGESR-KLFK----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
              A+G    +LF     ++  +             +          + +  ++      
Sbjct: 196 RNAAVGRRLNELFPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGVRVFHTIKFPLRDA 255

Query: 288 ------EAGIAIDVSKEITVNDQLTHTY 309
                   GI+ID++    +  +L   +
Sbjct: 256 AGGVVDVGGISIDITDRSKMEGELRAAH 283


>gi|159897671|ref|YP_001543918.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890710|gb|ABX03790.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 631

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 118/627 (18%), Positives = 225/627 (35%), Gaps = 38/627 (6%)

Query: 185 CKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
            ++L        V  +     LVW +      ++ N +                     L
Sbjct: 14  QRRLIKATRRKDVTLEQFPVGLVWFQGSQ---VFFNQAVTAMIGYSNAEIATTEQWFSTL 70

Query: 244 F-KEEIKKRMISSSALEKNFCETVST-LEHGNNK--SYKIVRVLNSFGEAGIAIDVSKEI 299
           +  E    R + ++       +T+   + +  N+    +     +   +  +  D+++  
Sbjct: 71  YGPEAASMRQLYATTSAATLGQTIHGFVVNRQNQSCLLECTLASHGHRQVWLVRDITESN 130

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +   L  T +      V     D      F  R    +  +D       P+ +    F 
Sbjct: 131 RLERLLLQTEQT---ARVGGWEIDLRTNQVFWTREMYHI--LDTTAHEYTPTIENQNFFH 185

Query: 360 RSANKLPEQLNWKTWKENI----FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            +A  +  +  ++   E       SV   +   +  W    G+            G++  
Sbjct: 186 TNATLIQLEAIFRQMIEQRGSFDMSVEMRTFRGRSFWGRFTGRVELEFGQPIKIYGSL-- 243

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +++T    L               +    G+    PDGR+  +NPA   L        +
Sbjct: 244 -QDVTEHHQLTEALRVAEHDYRTIFETTKIGIFRITPDGRVLRANPALVRLAG-----FA 297

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIIT---SFDDER----KSLQGTLELLSDSVLEY 528
               + +  A  +  Y E   ++    ++    S+D+      +   G    +S++    
Sbjct: 298 HEHELVDYVADLTTMYVEPQRFEYLRELLQTNGSYDEIESEVYRPATGERIWISETSRLV 357

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                       T   +T   + E AL    +A   A+  K++F+ ++S+ELR+PL  II
Sbjct: 358 YAEDGSMLYAEGTIQEITARKQVEEALRHARDAAEAANHAKSTFLANMSHELRTPLNAII 417

Query: 589 GFTDLLKTSKLGSLNSKQSQY---VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           G+++LL         +   Q+   +  I+ +   LLNLVND+LDLA V+AG  ++   T 
Sbjct: 418 GYSELLMDDTDFDDPTMVEQFRHDIAQINDAGHQLLNLVNDVLDLAKVEAGKYQVAAETF 477

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            LN L+ ++  +I     +N   +    +  L     DR  L QI   +LSNA  F+  G
Sbjct: 478 DLNSLVRDLIATINPMAQKNANSLYFEPNKHLPLIHTDRSMLRQILLNLLSNAAKFTKAG 537

Query: 706 ST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           S  + +     +      V++ G  + ++  + +F  F        RR  G GLGL++  
Sbjct: 538 SINISVSFDPASQHVQCRVRDTGIGMNDEQMQRLFEPFTQGDASTTRRYGGTGLGLALCR 597

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
            FI L  G + + S     +      P
Sbjct: 598 HFIELLNGSIQVESVFGQGSIFTIVFP 624


>gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 364

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 162/367 (44%), Gaps = 18/367 (4%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     I+   + +     +G+I   N A          RL        I    S 
Sbjct: 3   KQASQYARSLIEASLDPLVTISGEGKITDVNEASVQATGVPRERL--------IGTVFSD 54

Query: 490 YYNESD-GWDLFAAIITS--FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           Y+ E D   + +  + +     D   +++     ++D +   S+      + +  F    
Sbjct: 55  YFTEPDKAREGYQKVFSEGFVRDYALAIRHITNRVTDVLYNASVYKDDKGRVLGVFAAAR 114

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D    +R      ++L++A  +K+ F+ ++S+ELR+PL  IIGF + L   K G+LN KQ
Sbjct: 115 DVTERKR----FEQSLQEASRMKSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTLNPKQ 170

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+  I  S   LL L+ND+LDLA V+AG M L   + VL+  ++EV         + +
Sbjct: 171 KEYLGDILNSGKHLLQLINDVLDLAKVEAGKMDLTPVSFVLSQAIDEVCAVAKPLAQKKH 230

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
           I +++    +L     D+Q+  Q+   +LSN + F+  G  V + A   D   F  SVK+
Sbjct: 231 IHVRLTVAPELSCVTLDQQKFKQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLSVKD 290

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +  + +F  F         +  G GLGL++    + L GG +++ S     +T
Sbjct: 291 TGIGIKPEDIQRLFREFEQLESGASRRYEGTGLGLALTRKLVELQGGAINVESEVGVGST 350

Query: 784 INCRIPS 790
            +  +P 
Sbjct: 351 FSVVLPL 357


>gi|86142642|ref|ZP_01061081.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
 gi|85830674|gb|EAQ49132.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
          Length = 1205

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 135/732 (18%), Positives = 286/732 (39%), Gaps = 72/732 (9%)

Query: 114 SFENWLKFHHYIKLSKATEKLR----KEGQSFD--LVAETQNDCA--IKIEGRVSGSCAF 165
            FE  + F+   +  +  + L     +EG SFD   +  T +     ++  G+       
Sbjct: 198 RFEAGINFYKEGENREKIKTLFSKCVEEGVSFDDEFIIITADGKEKWVRSMGKAEFENGV 257

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
              + + G + +++             + F  +F++    +   +   +++ AN S ++ 
Sbjct: 258 C--IRVYGAFQDISNRKKHQLAREKAENRFTKVFENSSIGIVLVNHQSNLVMANSSARRI 315

Query: 226 TETEGIVFQKAIGESRK--LFKEEIKKRMISSSALEKNFCETVSTLE---HGNNKS---- 276
              + +  ++ +  + K  L  E I + + + +AL     +         HG+ K     
Sbjct: 316 FGLDHLSEEEVLEYTIKDVLLPEYIPEAIENRTALMSGDIDHYQMEVECYHGSGKVIWCS 375

Query: 277 YKIVRVLNSFGEAGIAI----DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYL 328
           +    +  +  ++ + I    D++K  ++  +     +    +       +A+ D +   
Sbjct: 376 FSCSMITETEAQSKLVITQVEDITKRKSLERRALENASKFKRVFEYSPNGMALVDLHGRW 435

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           +  N +  ++       L        L E     ++   + + + + + I     + +  
Sbjct: 436 RSVNHNLAQMIGYSREELLK----MSLREITHPEDR---ENDAQLFSKIITKELTNYQVE 488

Query: 389 KDTWHLPNGQTLH----VIVTSNPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETID 441
           K   H  +G  +H    V    + RG     I    ++T +++ +    + +      +D
Sbjct: 489 KRYLH-KDGSLVHCFLTVSGLFDERGNVRSLIGQVVDMTDEINAKKALESSLNEMRVILD 547

Query: 442 HLSEGVAV-FGPDGRIKLSNPAFRSLWKT---------EENRLSPGTHIRNIAATCSRYY 491
             ++ + V    D  I+  N    +L            +         + N A      Y
Sbjct: 548 STTQVIIVETDLDHIIRKFNKGAENLLGYTAEEVIGNQKPAIFHVDEEVENYALKLKEEY 607

Query: 492 NES-DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NV 545
            E  D  D+F   I   + E +      +  +   ++  +  + + +   T       ++
Sbjct: 608 GEQVDKHDVFTYKINRGELETRDWTYVRKDGTTFPVQLVVTAIKDDEGKTTGYLGVSADI 667

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +     E +L +  +    A++ K+ F+ ++S+E+R+PL  +IGF D+L  S    LN  
Sbjct: 668 SALKAMEYSLIKAKQKAEAANKYKSEFLANMSHEIRTPLNGVIGFADILMKS---PLNEN 724

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +Y+E I AS+  LL+L+NDILD + ++AG + L+   + + +L     + I  + ++ 
Sbjct: 725 QQKYMETIYASAISLLDLINDILDFSKIEAGKLSLSEERVNITELCGRSVEMIKHEAYQK 784

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-------G 717
           NI + +    K+    +AD  RL QI   +LSNA+ F+  G  + LK    N        
Sbjct: 785 NIEVLLNIPQKIDQYIIADGLRLRQILINLLSNAVKFTHDGE-IELKVEEQNSALHPNKK 843

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
            F FS+++ G  I E   + +F  F        R   G GLGL+I    + L    + + 
Sbjct: 844 QFTFSLRDTGIGISEQNLQEIFKAFNQGDASTTRKYGGTGLGLTISNRLLQLMESKLEVR 903

Query: 776 SSDEGVTTINCR 787
           S+    TT    
Sbjct: 904 STLGVGTTFYFT 915


>gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1075

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 115/666 (17%), Positives = 233/666 (34%), Gaps = 44/666 (6%)

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD- 210
           A+ + G +    A  R      +   +A      ++L      F +     +  +W  D 
Sbjct: 268 AVLVVGGLYRVFAIARYNR--ELQRSIAAQQQAEQRLQRSEERFALAMRGSNDGLWDWDI 325

Query: 211 QAGDILWANI-----SYKKNTETEGIVFQKA-IGESRKLFKEEIKKRMISSSALEKNFCE 264
               + ++        Y+   +   +   +A I    +   E+   R +S      +   
Sbjct: 326 PTDRVTFSPRWLEMLGYQGAPQDADMRHWQAHIHPDDQPRVEQALGRFLSGDQQHYHSEY 385

Query: 265 TVSTLEHGN----NKSYKIVRVLN-SFGEAGIAIDVSKEITVNDQLT----HTYEILHNL 315
            +   +       ++++ +      +    G   D++       +L              
Sbjct: 386 RMRHKDGHTIAVLSRAFVLRDATGRAIRMVGTHADITALKEQARRLRESETRFRAYFEQS 445

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            V + +   +R+    N +F  +            S  ELL+        P+ L     +
Sbjct: 446 VVGMVMASLDRHFIDANHAFCHMLGY---------SRGELLKMNFPQITYPDDLERDLVQ 496

Query: 376 -ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-------PRGGTIWMFENLTVQVDLET 427
            E + S   S+   +  +   +G  +  ++++             I   +N+  Q     
Sbjct: 497 FEQLRSGQVSAFEMEKRYLHRDGHPVWGLLSATTVKDELGQASYLIAQVQNIDTQKKALE 556

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +      +     +    G+A           N     +    E  L        I    
Sbjct: 557 QLRQSESMMRGYFELGLIGMATTTAQHGWVQINQRLCEILGYPEMALRQ-KSWAEITHPQ 615

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            R  +E     L   +   +  E++ +   G     S S              +    ++
Sbjct: 616 DRQADEVAIERLRKGLSEGYALEKRFIRQDGAFIYASISAGCLRKEGGEIGHFLTLVQDI 675

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T   R E AL E+ E    A+  K++F+  +S+E+R+P+  I+G  +LL+ S    L S+
Sbjct: 676 TARKRMELALQEQKEQAEAANRAKSTFLAVMSHEIRTPMNAILGMAELLRES---DLTSR 732

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   VE ++ S   LL+L+NDILDL+ ++A  + L +    L  L+ +V      +    
Sbjct: 733 QHWCVETLNRSGESLLSLINDILDLSKIEAERLTLEHVVFDLVQLVGDVCSLFGYEAQSK 792

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +K      L    V D  RL QI   ++ NA+ F+ +G   +      +G   F ++
Sbjct: 793 GLALKHHIAPTLPRYVVGDPIRLRQIMMNLVGNAVKFTKQGHVSVELNPLADGRLSFVIR 852

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  +  +  +++F  F        R   G GLGL+I    + L GG + + S+    +
Sbjct: 853 DTGIGVSVEQQRNIFKPFTQADSSITREHGGTGLGLTICMRLVALMGGEMQLESTLGEGS 912

Query: 783 TINCRI 788
             +  +
Sbjct: 913 CFHFEL 918



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/446 (10%), Positives = 131/446 (29%), Gaps = 51/446 (11%)

Query: 29  TIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDG 88
            +A +++  +  +  + R    L + +         +     ++   +  +N     WD 
Sbjct: 266 LVAVLVVGGLYRVFAIARYNRELQRSIAAQQQAEQRLQRSEERFALAMRGSNDGLWDWDI 325

Query: 89  KDET----PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF--- 141
             +     P  + ++      PQ D D+  ++  +      ++ +A  +     Q     
Sbjct: 326 PTDRVTFSPRWL-EMLGYQGAPQ-DADMRHWQAHIHPDDQPRVEQALGRFLSGDQQHYHS 383

Query: 142 DLVAETQNDCAIKIEGRVSGSC-AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           +     ++   I +  R      A  R + + G ++++     + ++L    + F+  F+
Sbjct: 384 EYRMRHKDGHTIAVLSRAFVLRDATGRAIRMVGTHADITALKEQARRLRESETRFRAYFE 443

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE----SRKLFKEEIKKRMISSS 256
                +         + AN ++            K           L ++ ++   + S 
Sbjct: 444 QSVVGMVMASLDRHFIDANHAFCHMLGYSRGELLKMNFPQITYPDDLERDLVQFEQLRSG 503

Query: 257 ALEKNFCETVSTLEHGNNKS--YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            +     E       G+          V +  G+A   I           +    + L  
Sbjct: 504 QVSAFEMEKRYLHRDGHPVWGLLSATTVKDELGQASYLI------AQVQNIDTQKKALEQ 557

Query: 315 LT--------------VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L               + +A           N+   E+       L          E   
Sbjct: 558 LRQSESMMRGYFELGLIGMATTTAQHGWVQINQRLCEILGYPEMALRQK----SWAEITH 613

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTIWMF- 416
             ++  +++  +  ++ +   Y      +  +   +G  ++  +++      GG I  F 
Sbjct: 614 PQDRQADEVAIERLRKGLSEGY----ALEKRFIRQDGAFIYASISAGCLRKEGGEIGHFL 669

Query: 417 ---ENLTVQVDLETKYNTLVKVQGET 439
              +++T +  +E       +     
Sbjct: 670 TLVQDITARKRMELALQEQKEQAEAA 695


>gi|37519945|ref|NP_923322.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35210937|dbj|BAC88317.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 577

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 114/606 (18%), Positives = 214/606 (35%), Gaps = 57/606 (9%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE---IKKRMISSSALEKNFCE 264
            R   G  +    +Y +  ++  +   +    +      +       +I   A  +    
Sbjct: 3   RRGPDGHFV---RNYAQPKQSRTLRLTETAWAALVELARQRGISTSDLIEQWARGQFAFP 59

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
           +    + G  +   +         A +A+    E    +Q++   +IL ++T A    D+
Sbjct: 60  SGPIGDDGEARPVGV--------GAALAVRPCDEQAEGEQVS---KILESITDAFFALDE 108

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           +    + NR    L       L       E           PE L     +E   +V + 
Sbjct: 109 HWCFTYLNRQAERLLSRSREELIGKNIWVEF----------PEALGTTFDREYHRAVERQ 158

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                + ++ P    L V      +G  ++ F ++  +   E       +      D + 
Sbjct: 159 VRVGFEEFYAPLDIWLAVRAYPTAKGLAVY-FLDIAERKRAEQALLASEQNFRFLADTIP 217

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           + V    PDG     N  +         +                 +       L     
Sbjct: 218 QMVWTTRPDGYHDFFNRRWFEYTGMNLEQTQGW-------GWSHLLHPHDLDKCLHLWKY 270

Query: 505 TSFDDERKSLQGTLELLSDSVLEY---SIIPLPNAQ-----TMLTFVNVTDSVRAERALT 556
           +    E   ++      SD V  +     +PL + Q        T  ++ D  RAE+  T
Sbjct: 271 SLATGEPYDIEYRFRRASDGVYRWQLGRALPLRDPQGNILRWFGTCTDIDDQKRAEQERT 330

Query: 557 E-------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                          A+  K+ F+  +S+ELR+PL  IIG+T +L+   L      Q++ 
Sbjct: 331 HLLERERQARAEAEAANRAKDEFLAMLSHELRTPLNPIIGWTQMLRRGNLTP--EMQAKA 388

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +  +   L+ D+LD++ +  G   +    I L  +L+   +++     +  + +
Sbjct: 389 LETIERNGKLQNQLIEDLLDISRIIRGKFSIAPIPIELPPVLHSAIEAVRNLAEQKEVLL 448

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
               +         AD  RL Q+   +L+NA+ F+ KG  V +  A D+ +   +V++NG
Sbjct: 449 DCRCEPSALNRQVSADPTRLQQVIWNLLTNAIKFTPKGGRVEVDLAGDSANLYVAVRDNG 508

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
             I  +    +F RF     R  R   G+GLGL IV   + LHGG V   S  +      
Sbjct: 509 MGIAPEFLPYMFERFRQADSRSTRKEGGLGLGLFIVRHIVELHGGMVQAESEGEGKGAVF 568

Query: 785 NCRIPS 790
              +P+
Sbjct: 569 TVELPA 574


>gi|239831458|ref|ZP_04679787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823725|gb|EEQ95293.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 783

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 115/538 (21%), Positives = 221/538 (41%), Gaps = 47/538 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 243 AARAREADDLSGQIQRRIDLALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 296

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 297 --DAVLPFGDVAAIINTEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 354

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 355 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFILWDSNNRLVMANSKFSE 414

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 415 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 474

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G L  +                S+  L  +I  L  A+       V +     R   +
Sbjct: 475 QDGGLVSIGTDITQLKLHQERLVDSERRLMATIHDLSIARK-GERDRVRELSELARKYGQ 533

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 534 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 593

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI +    +  
Sbjct: 594 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRMISLQADEKNIAVNTRIEDA 653

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   K
Sbjct: 654 M-QLYADRRAIKQVLINLLSNAVKFTSYGGQITVRARKTGSALFMTIQDTGVGIPKSAIK 712

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP ++
Sbjct: 713 KIGQPFEQVENQFTKTHTGSGLGLAITRSLAELHGGWLRIRSTEGVGTVVSVCIPDRK 770


>gi|218887769|ref|YP_002437090.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758723|gb|ACL09622.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1358

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 122/661 (18%), Positives = 241/661 (36%), Gaps = 78/661 (11%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            L  +++EL +      +L    + F+  F+     +      G  L  N           
Sbjct: 568  LASVHAELRDRARHKAELDESETRFRATFEQAAMGLALVAPDGSWLRVNGKLCAIVGYSA 627

Query: 231  IVFQKAIGES---RKLFKEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIVRVL--- 283
                K   +     +    ++       +    N+  E     + G      +   L   
Sbjct: 628  EELTKLRFQDITHPEYLDSDLALMHRLLAGTIDNYSLEKQYLRKGGEPVWVNLTVALVRK 687

Query: 284  ---NSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                      +  D+ +  T   +L        +++ +   AI +  +     + N +  
Sbjct: 688  ADGTPDYFISVVEDIQQRKTFERRLAESEERFRQVVEHAPEAIFLQ-KEGRFAYANPAAR 746

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLP 395
             L+ +D            +LEF       P+  +    +    +  + +           
Sbjct: 747  VLFGVDDP---KEIMGRGVLEFFH-----PDDRSMVVERIRQLNEERRTVPRGHVRIQRR 798

Query: 396  NGQTLHVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            +G  +    ++ P     R G +    +++ ++  E +   L +  GE        V   
Sbjct: 799  DGTVVDAETSAVPFRLGGRHGALVFVRDISDRLWAEREIRDLARFPGE----NPNPVMRV 854

Query: 451  GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             P   +  +N              S GT +    A     +        FA ++   +  
Sbjct: 855  SPALVLLHANR-------------SSGTFLECYGARVGSPFPAP-----FAEVVA--ESL 894

Query: 511  RKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEI 568
            R     T E    D +   ++ P+ +      + +++T+   AE  L    E    A + 
Sbjct: 895  RTWAPRTFEAQCLDRIYAMTVNPIADGGYANIYGMDITERKNAELELINAREVAETATKA 954

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K++F+ ++S+ELR+P+  ++G   LL  +    L+ +Q  YV+   A+ + L  L+ D+L
Sbjct: 955  KSAFLANMSHELRTPMNGVLGMLQLLDAT---PLDPEQRGYVQVAHAAGSNLTRLLGDLL 1011

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            DLA V++G + +       N L  EV   +  +     I ++  +DG  G+ + D QR+ 
Sbjct: 1012 DLARVESGRLTIREEPFDFNGLTQEVLAVLRPEADRKGIVLEAATDGMPGALLGDPQRIR 1071

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNG------------------DFIFSVKNNGSSI 730
            Q+   I+ NA+ F+ +G   +L     +                       +V++ G  I
Sbjct: 1072 QMLLNIVGNAVKFTDRGHVRLLARFEPSAGPSATAEPGGQGEPGGQGTLYLAVEDTGIGI 1131

Query: 731  PEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            P DM  ++F  F    +A   +  G GLGLSIV   ++L  G VS++S +   TT+  R+
Sbjct: 1132 PSDMLGNIFEPFTQVEDAVSRRHGGAGLGLSIVRRIVDLMEGEVSMTSEEGRGTTVTLRL 1191

Query: 789  P 789
            P
Sbjct: 1192 P 1192



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 104/245 (42%), Gaps = 17/245 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  +     + D +K  F  ++S+ELR+     +    L +     S + +    +  +
Sbjct: 180 ELAARCARAEELDVLKTRFFANISHELRT--PLTLLLGPLERLLAETSEDDEHRHSLFTM 237

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +L   V+D+LDL+ VDAG M+  ++   L+ L         T   +  +   V +
Sbjct: 238 LRNARLLHQHVDDMLDLSRVDAGAMQPRHAEADLSALTRTTCAYFDTLAAQRGMHYGVQA 297

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +L + V D  +  +I   +LSN+  F+  G +V +   R   + + SV ++G  +P  
Sbjct: 298 PLRLDAQV-DTDKYRRILLNLLSNSFKFTPDGGSVSVTLERQGDEALLSVSDDGPGVPAH 356

Query: 734 MCKSVFNRFVSNAHRGQ--------RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           +  +VF R+  +    +                +IV+ F  LHGG  S+    EG     
Sbjct: 357 LRGAVFERYRQSGEGARGLHGGSGLGL------AIVKEFAELHGGTTSVGQGAEGGALFQ 410

Query: 786 CRIPS 790
            R+P 
Sbjct: 411 VRLPL 415


>gi|206889312|ref|YP_002248455.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741250|gb|ACI20307.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 620

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 172/380 (45%), Gaps = 33/380 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +    +      ID++++G+ V   DG I   NPA   ++   E  +  G +++ +    
Sbjct: 247 ELQDTLAYLTTIIDNMADGLIVVDKDGVINHINPAASEMFGKAEFEM-IGKNVKILGKEL 305

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            +   +S   +   +   +  +ER        +  +   E S         +        
Sbjct: 306 DKLVKKSLNTEEIVSNEINLVNERVGKAVAKSIKKEYFSEESEAKGILGSVI-------- 357

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK----TSKLGSLN 603
                  L       ++ D +K  F+  VS+ELR+PLT+I+GF +++      + L  L+
Sbjct: 358 -------LIRDITQEKEVDRLKTEFITVVSHELRTPLTSILGFIEIINKKFTENILPHLD 410

Query: 604 ----------SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                     +K ++  + I +    + +L+ND+LD++ +++G    N+  I +  ++ +
Sbjct: 411 MNNFRLSKAVNKINKNFKIILSEGERITSLINDVLDISKLESGKAIWNFKEISIQGVITD 470

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +++++   +  I   +     L    ADR+RL+Q+   +LSNA+ F+ KG  V  K A
Sbjct: 471 AYKALSSLFEQKGIPCYIEIQPSLPFINADRERLIQVVINLLSNALKFTEKG-YVKCKTA 529

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
            +  + + SV+++G  IPE+  + +F +F       RG+ +G GLGL+I +  +  HGG 
Sbjct: 530 LNADEIVVSVEDSGIGIPEEEKERIFEKFKQVGDLIRGKPKGTGLGLAISKQIVEAHGGK 589

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S     +T    IP K
Sbjct: 590 IWVESELGKGSTFYFTIPLK 609



 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 20/44 (45%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
             + + D L +   I+ N+   + + D++  +   N +  E++ 
Sbjct: 244 AVVELQDTLAYLTTIIDNMADGLIVVDKDGVINHINPAASEMFG 287


>gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 582

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 157/393 (39%), Gaps = 36/393 (9%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G        +   + ++ ++    +      ++++  GV +    G I L N +   +  
Sbjct: 210 GELARTINRMAENLQIQMQHIRENEYRLQGVLENMVSGVMMVDQRGTITLVNRSAEDILG 269

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              + L   +++            + +   L A  I +    R+ L   L    + +LE 
Sbjct: 270 YSSHELLNKSYLDA--------GFQLEFTALLADAIETHTRVREEL--MLHFPQEQILEV 319

Query: 529 SIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            + P+   + Q     V + D     R            + I++ FV +VS+EL++P+  
Sbjct: 320 HVSPIVQGDGQRKGVLVVLHDITAVRRL-----------ERIRSEFVANVSHELKTPVAA 368

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           + GF + L    L         +++ I   S  L  L+ DIL+L+ +++  + L +S + 
Sbjct: 369 VKGFAETLMAGALED-KEMARSFLQIIYDESDRLNRLIGDILELSKIESKRIPLQFSPVD 427

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  ++    Q +  +  + +I ++   + +L    AD  RL QI   +LSN + ++ +G 
Sbjct: 428 VESIVENSIQMMKAEAEKKHITLESCVENEL-YIEADEDRLRQILINLLSNGISYTPEGG 486

Query: 707 TVILKAA--------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
            V +            DN      + + G  IPE     +F RF            G GL
Sbjct: 487 RVSIGVEFVPSLDDNPDNERMRIRISDTGIGIPEKDLPRIFERFYRVDKARSRSSGGTGL 546

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSIV+    LH G +S+ S     TT N  +P
Sbjct: 547 GLSIVKHLTELHHGTISVESEAGKGTTFNIELP 579



 Score = 44.5 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 26/190 (13%)

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQLTHTY 309
           R+             V+        + ++    N      +A  +++    +  Q+ H  
Sbjct: 173 RIARGITRPIERITRVARQMANQQYAARVPEAGNDE-VGELARTINRMAENLQIQMQHIR 231

Query: 310 E-------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           E       +L N+   + + DQ   +   NRS  ++       L      D         
Sbjct: 232 ENEYRLQGVLENMVSGVMMVDQRGTITLVNRSAEDILGYSSHELLNKSYLDAGF------ 285

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFE 417
                QL +     +    +      +   H P  Q L V V+   +G     G + +  
Sbjct: 286 -----QLEFTALLADAIETHTRVR-EELMLHFPQEQILEVHVSPIVQGDGQRKGVLVVLH 339

Query: 418 NLTVQVDLET 427
           ++T    LE 
Sbjct: 340 DITAVRRLER 349


>gi|189466203|ref|ZP_03014988.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
 gi|189434467|gb|EDV03452.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
          Length = 885

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 105/513 (20%), Positives = 222/513 (43%), Gaps = 29/513 (5%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV---------ELWE 340
           G   +++      + +      ++N T  I    ++  L F NR F          ++ +
Sbjct: 233 GYIQNITDIQQRRNDINLLTHAINNSTEDIFAAHEDGTLIFANRQFKLHHNLNNTDDITQ 292

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           + +  + +   N+E  + L  + K  E       K+   ++Y     + +       ++ 
Sbjct: 293 LKIYEIDSYVRNEEEWKKLAVSIKNGE-------KKLCVTMYNPLPLYPEILAY---ESN 342

Query: 401 HVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
              + S+   GTIW F  +++ ++  E +     ++  +TI++L  G+ V       K  
Sbjct: 343 AYCIISDEGEGTIWAFGRDISQRIKHEQQIKRFSQILDKTIEYLPAGIVVKDIKNNFKYL 402

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTL 518
                S  +    + + G    +               ++ A      +  E +   G  
Sbjct: 403 YRNRESYNREITMQEALGKDDFDFYPLEIAQEKRRQDIEIAATGQEMHWITEERDGNGQS 462

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             L    ++       +   +    ++TD    +R L    E    +D++K++F+ ++S+
Sbjct: 463 LFLDKRKMKIESNDF-SPILLNIEWDITDMELMKRELMVAKEKAETSDQLKSAFLANMSH 521

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  IIGF+ ++  S+      ++ +Y   + A++  LL L+N+ILDL+ ++AGI+
Sbjct: 522 EIRTPLNAIIGFSRIIAESEN---TEERKEYYNIVEANNERLLQLINEILDLSKIEAGIV 578

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           + + + + L  L  E+  +   +    ++ +      +     +D+ R+ Q+ S ++ NA
Sbjct: 579 EFSIAPVRLYPLCKEIHDAHVFRCPS-DVELIFEPSDEDIRIDSDKNRIFQVISNLIGNA 637

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
             F++ GS +     ++  + IF V + G+ I  +    VF RFV   +  Q  G GLGL
Sbjct: 638 FKFTTHGS-ISYGYHQEGENIIFHVTDTGTGIAPEKIGKVFERFVKANNFAQ--GTGLGL 694

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I ++ I   GG +S++S  E  TT    +P+K
Sbjct: 695 AICKTIIERLGGTISVTSELEKGTTFTFNLPAK 727


>gi|157692812|ref|YP_001487274.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157681570|gb|ABV62714.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 593

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 168/393 (42%), Gaps = 27/393 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q+    T  N   +     +  +++GV     DG I ++NP
Sbjct: 221 ILTQDEIGELAIAFNQMGKQLTFHITALNQEKEHLSNILSSMADGVITINIDGTILMTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +      +     +R        +LF   +++  ++ + ++ TL+  
Sbjct: 281 PAERFLQAWYYEQNMKIKDGDELPPEAR--------ELFHTAVST--EKEQMIEVTLQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +  +L   + PL N Q +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 TWVLL---MSPLYNQQDVRGAVAVLRDMTEERRL----------DKLRKDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  + G+++ +     GS   ++ +  + I   S  +  LVND+LDLA ++AG + LN
Sbjct: 378 TPIAMLQGYSEAIIDDIAGS-EEEKKEIAQIIYDESLRMGRLVNDLLDLARMEAGHITLN 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             +    +L  ++ +       E  + +          FV D  ++ Q+F+ ++ NA+  
Sbjct: 437 LESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQVDEPHFVLDPDKMEQVFTNLIDNAIRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           + +G  V              VK++GS IPE+    +F RF        R   G GLGL+
Sbjct: 497 TPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDLPFIFERFYKADKARTRGRSGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           IV++ +  H G +   S     T     IP K+
Sbjct: 557 IVKNIVEAHQGSIHAHSKAGTGTHFTFYIPRKK 589


>gi|91793039|ref|YP_562690.1| CHASE [Shewanella denitrificans OS217]
 gi|91715041|gb|ABE54967.1| CHASE [Shewanella denitrificans OS217]
          Length = 1659

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 131/691 (18%), Positives = 260/691 (37%), Gaps = 72/691 (10%)

Query: 157  GRVSGSCAFLR-ILSLDGIYSELAETT--------LKCKKLSNHISVFKVLFDSLDFLVW 207
            G + G    +R I +      ++ E          L+ + L + ++  K LFD++D  + 
Sbjct: 446  GVIVGVSQTIRDITAAQDAERQIHELNASLERKVHLRTQALEHVVAENKTLFDTIDQQLL 505

Query: 208  HR--DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS-----ALEK 260
            +   D  G IL  N ++    E  G   ++ +G S          ++            K
Sbjct: 506  YSEIDLQGIILAVNDNF---CEASGYSREQLVGLSHLQVSSGEHDKLFWQRLWNKIKSGK 562

Query: 261  NFCETVSTLEH-GNNKSYKIVRVLNSFGE------AGIAIDVSKEITVNDQLTHTYEILH 313
             +   + TL+  G  K +  V       +        +A D+++      +      +L 
Sbjct: 563  PWHGEICTLDSKGEPKWFDTVIAPIFDKQKNIERFVSLATDITERKNAQLEKNKVGALLS 622

Query: 314  NL-----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL----LEFLRSANK 364
            N+      VAI   D+   +   NR    L       L    S           LR    
Sbjct: 623  NVLFAASEVAIIATDETGIISIFNRGAERLLGYHRDELVGKISPAIFHLTQEVMLRGDEL 682

Query: 365  LPEQ-LNWKTWKENI-FSVYKSSETHKDTWHLPNGQ----TLHVIVTSNPRG---GTIWM 415
              E  +  + ++  I  + +K  ET + T+   +G     +L V    + +G   G + +
Sbjct: 683  SAEHGIEIRGFEAFIYHAKHKGPETRRWTYVRKDGSECQVSLSVSAMRDTQGNLLGYLGV 742

Query: 416  FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
              N+ + +  + +  +      +  +    G+  +  +  I   N    +++    +   
Sbjct: 743  ATNIDLMLKQQEELVSTSTQLTQAAEVAELGIWTWEIETNILDWNERMFAIYDYPSSLNH 802

Query: 476  PGTHIRNIAATCSRYYNESDGWDLFAAI-----------ITSFDDERKSLQGTLELLSDS 524
             G   ++          +     L AAI           +    DE + +QG   ++ D 
Sbjct: 803  NGLSYQHWLDRLHPDDVDMAQEKLKAAIEGTGEYDPIFRVIRPSDEVRYVQGGAHVIRDR 862

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              +         + +    ++T+    E  L    E        K++F+ ++S+E+R+P+
Sbjct: 863  FGKAL-------KLLGINRDITEQRELEHTLRRAKEEADATSAAKSAFLANMSHEIRTPM 915

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              I+G   L++ +    +  +Q  YV     ++  LL L+NDILD + +DAG + ++   
Sbjct: 916  NAILGMLQLVQHT---DMTPQQQDYVSKTEVAAQSLLGLLNDILDFSKIDAGKLNVDLHP 972

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
              L +++ E+   +A  M   +I +    D  +   V AD+QRL Q+   +  NA+ F++
Sbjct: 973  CSLEEIMRELAVLLAANMRRKHIEVLFDLDPSIPELVLADKQRLQQVLLNLAGNAIKFTA 1032

Query: 704  KGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            +G  ++    LK +        SV + G  I       +F  F+       RR  G GLG
Sbjct: 1033 QGHVILQVFNLKLSSHKVRLRISVADTGIGINVSQLDKIFQGFMQAESSTSRRFGGTGLG 1092

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            L+I +  + L G  + + S +   +     I
Sbjct: 1093 LAITKRLVELMGAELEVESQEGQGSRFWFDI 1123



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 65/170 (38%), Gaps = 13/170 (7%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +     +   +     +   ++H  + +  +  +G I   N     ++   ++ +  G +
Sbjct: 332 SRNKQQKRLLDAENARRANILEHSLDAIISYDSEGLITGWNQGAEHIFGYTKDEVMQGAN 391

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  I        N+   W  F  +++   +  ++  G       + L  S+  LP    +
Sbjct: 392 LGLIVPAA----NKEIEWTQFKQVLSG--EAIQNAVGVHHDKEQNKLSTSMTALPIYNHV 445

Query: 540 LTFVNVTDSVR-------AERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              V V+ ++R       AER + E N +L +   ++   ++HV  E ++
Sbjct: 446 GVIVGVSQTIRDITAAQDAERQIHELNASLERKVHLRTQALEHVVAENKT 495


>gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli Kim 5]
          Length = 590

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 85/422 (20%), Positives = 185/422 (43%), Gaps = 22/422 (5%)

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-------YNTLVKV 435
           +  E  +  W    G+++            +  + +++   + E +          + ++
Sbjct: 3   EEPEPIEVGW--AGGKSVIFDSRRISNDRILLTYADISAVREREKEIHETRAALERVGEM 60

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
             +    +S+G+A+   DG I++SN A   + +   + ++ G     +   C+   +  D
Sbjct: 61  MRDATHAMSQGLAIV-QDGIIRMSNEAMADILQIPAHYIAAGQGWLGMFEFCAARGDFHD 119

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
                     +    R+ +     +  +  +            +  F +VT+    E  L
Sbjct: 120 AAAEILQEWRANIAARQPISTVFHVAGERWVNMDATVSTGQHWVALFTDVTELKSREEEL 179

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E       AD  K+ F+ ++S+E+R+P+  ++G  +LL  +   +L+++Q  +++ I  
Sbjct: 180 RELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---NLDTRQKTFIDIIVK 236

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   LL ++NDILD + +DAG M L  +   + + + +V   +++   E NI +   +  
Sbjct: 237 SGNALLTIINDILDFSKIDAGQMTLRKAAFDITEAVEDVATLLSSHAAEKNIELLGRAAP 296

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFI--FSVKNNGSS 729
            L  + + D  R  QI + ++ NA+ F+ +G  V +    +    G+ +    +++ G  
Sbjct: 297 DLPAAVIGDAGRFRQIVTNLVGNAVKFTERGH-VFVDVGFETVVGGEIMANIRIEDTGIG 355

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +  +SVF++F        RR  G GLGL+I    ++L GG++ + S     +    +
Sbjct: 356 IPHEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGKGSVFTVK 415

Query: 788 IP 789
           +P
Sbjct: 416 LP 417



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 71/199 (35%), Gaps = 30/199 (15%)

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN-----------LTVAI 319
            G +  +   R+ N       A D+S       ++  T   L             ++  +
Sbjct: 14  GGKSVIFDSRRISNDRILLTYA-DISAVREREKEIHETRAALERVGEMMRDATHAMSQGL 72

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           AI  Q+  ++  N +  ++ +I   ++A       + EF  +        ++      I 
Sbjct: 73  AIV-QDGIIRMSNEAMADILQIPAHYIAAGQGWLGMFEFCAARG------DFHDAAAEIL 125

Query: 380 SVYKSS----ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV-- 433
             ++++    +     +H+   + +++  T +     + +F ++T     E +   L+  
Sbjct: 126 QEWRANIAARQPISTVFHVAGERWVNMDATVSTGQHWVALFTDVTELKSREEELRELLSR 185

Query: 434 -----KVQGETIDHLSEGV 447
                + + E + ++S  +
Sbjct: 186 AEAADRAKSEFLANMSHEI 204


>gi|39996387|ref|NP_952338.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983267|gb|AAR34661.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 772

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 92/496 (18%), Positives = 190/496 (38%), Gaps = 37/496 (7%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +  +    I I D   +    N +            A   + DE L        L  
Sbjct: 41  YRALFEHAIDGIFIMDAEGHYLDVNPAICS---------AIGYTRDEFLAL--DWGVLSR 89

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSN--PRGGTIWMFENLTVQV 423
            ++   W     +     E  ++   +   NG  L V ++++  P G  + +  +++ + 
Sbjct: 90  GVD-SGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDVSERK 148

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +E    +  +     +D     + +   DG ++L+N A+           + G  +  +
Sbjct: 149 RMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERETGI-PRNAAVGRRLNEL 207

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QT 538
                          +  +  T+  DE       +      V      PL +A       
Sbjct: 208 FPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGV-----RVFHTIKFPLRDAAGGVVDV 262

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +++TD  + E  L   + A   +   K  F+ ++S+E+R+P+  +IG  +LL+ + 
Sbjct: 263 GGISIDITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRET- 321

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q +Y E    S+  +L ++N +LD + +++  + L      + + +    +  
Sbjct: 322 --DLDPRQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPF 379

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
                   + +       +  + V D  R  QI + ++ NA+ F+ +G+ TV L AA  +
Sbjct: 380 RAVAARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQGAITVQLGAAAVD 439

Query: 717 G---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
               D   SV + G+ I  +   ++F+ FV       R   G GLGL+IV   +    G 
Sbjct: 440 DCRIDVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGV 499

Query: 772 VSISSSDEGVTTINCR 787
           +S++S     +T + R
Sbjct: 500 ISVASEPGMGSTFSFR 515



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 26/255 (10%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE--SRKLFKEEIKK 250
           S ++ LF+     ++  D  G  L  N +           F        SR +       
Sbjct: 39  SGYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAA 98

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-GIAIDVSKEITVNDQLTHTY 309
            +      E    E      +G+  + ++   L   G+  GIA DVS+   + + L  T 
Sbjct: 99  SLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDVSERKRMEESLRSTS 158

Query: 310 EILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           E L  +     + I I   +  L+  N ++     I        P N  +   L   N+L
Sbjct: 159 EFLDTILDEAPLPIYITSVDGTLRLANNAWERETGI--------PRNAAVGRRL---NEL 207

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-----SNPRGGTI---WMFE 417
                   + E    V +S+ T      L  G  + V  T      +  GG +    +  
Sbjct: 208 FPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGVRVFHTIKFPLRDAAGGVVDVGGISI 267

Query: 418 NLTVQVDLETKYNTL 432
           ++T +  +E +    
Sbjct: 268 DITDRSKMEGELRAA 282



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 14/148 (9%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           GI  +++E     + L +       + D     ++     G +  AN ++++ T   GI 
Sbjct: 139 GIARDVSERKRMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERET---GIP 195

Query: 233 FQKAIGESR-KLFK----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
              A+G    +LF     ++  +             +          + +  ++      
Sbjct: 196 RNAAVGRRLNELFPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGVRVFHTIKFPLRDA 255

Query: 288 ------EAGIAIDVSKEITVNDQLTHTY 309
                   GI+ID++    +  +L   +
Sbjct: 256 AGGVVDVGGISIDITDRSKMEGELRAAH 283


>gi|32476695|ref|NP_869689.1| sensor/response regulator hybrid [Rhodopirellula baltica SH 1]
 gi|32447241|emb|CAD77067.1| probable sensor/response regulator hybrid [Rhodopirellula baltica SH
            1]
          Length = 1739

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 118/773 (15%), Positives = 271/773 (35%), Gaps = 71/773 (9%)

Query: 60   SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWL 119
            + ++++ +    + SL+  +    IVW    +          R    QT    +    WL
Sbjct: 836  TDVTQLRESEELFQSLVRASAQ--IVWIANADGVVESDSPSWREYTGQTLEQWVGLG-WL 892

Query: 120  KFHHY--IKLSKAT-EKLRKEGQSFDLVAETQND----CAIKI----EGRVSGSCAFLRI 168
               H    +L++        + +   L    +N        ++    + R  G+     +
Sbjct: 893  DVIHPDDRELTQKVWTDAVAKDRPLVLEYRLRNRHGEYRWFQVRTAPQRRPDGT-----V 947

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI-----SYK 223
                G+  ++ +      +L++  +  + + ++   LV   D+ G +L  +      +  
Sbjct: 948  NRWVGMNIDIHDQKQSRLELADREAHLRRVINNQLGLVGVIDRNGLLLEVDDRSLEYARV 1007

Query: 224  KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS---YKIV 280
               E  G  F +A   +      +  +  +  +   +     VS   HG++     + I 
Sbjct: 1008 NRHEVIGKPFHEAPWWNYDPNVAQQMRDAMERAFKGEPVRYDVSLFAHGDDGVLIDFMIA 1067

Query: 281  RVLNSFGEAGIAI----DVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
             V +  G     I    D+      E+   +       I +     I   D+   +   N
Sbjct: 1068 PVFDDDGNIEYLIPSGVDIRDRKKAELKQQEVAVRLEAIFNTAVDGIITIDRRGTINSVN 1127

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
             +  +++   +  L  +  N  + E   S     E   +    E     +      + T 
Sbjct: 1128 VAAAKIFGYGVDELTGSNINALIPEPEHS-----EHDGYLKAYEETGQSHIIGHQRQVTG 1182

Query: 393  HLPNGQT----LHVIVTSNPRGGT-IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
               +G T    L V  TS       + +  +++ +V  E       +     +       
Sbjct: 1183 RRKDGSTFSLDLSVSETSLSGEHRYVGIVRDVSDRVRSEQAKKNASRRMQMALRAGGMAA 1242

Query: 448  AVFGPDGRIKLSNPAFRSLWKTEE---------NRLSPGTHIRNIAATCSRYYNESDGWD 498
              + P  +          L+   +           L+    + ++          +  ++
Sbjct: 1243 WEWTP--KKSYWTKEMYELFGVTDDRKGSPELCFSLTHPDDVESLKRHWQEAIEGNQDYE 1300

Query: 499  LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                I+   D E + + G  E++       +       +      + T        L E 
Sbjct: 1301 YEFRIVRP-DGEMRWITGMGEVVRGKSGNVT-------RMYGVNWDSTQEHVQAETLRES 1352

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                 +A   K++F+ ++S+E+R+P+T I+G+ +LL+       +++   +++ I  +  
Sbjct: 1353 ERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQDIIQ---DTEGLHHLQTIRRNGD 1409

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL+++NDILDL+ ++AG + +         L+ +V+  +  +  E  + + V    ++ 
Sbjct: 1410 YLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKEAGLELTVEYGQQIP 1469

Query: 679  -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             S  +D +RL Q+   ++ NA+ F+ +G+  ++++   +       V + G  I  +  +
Sbjct: 1470 ASIQSDAKRLKQVLINLVGNAIKFTPEGNVRLVVRMESEPIRLCIDVIDTGIGITPEQQE 1529

Query: 737  SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +F  F            G GLGL+I      + GG +   S     +T    
Sbjct: 1530 QLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVGVGSTFTLS 1582



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/437 (12%), Positives = 145/437 (33%), Gaps = 40/437 (9%)

Query: 162  SCAFLR----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
              AF+R      S  G +  +  T     +L     +F+ L  +   +VW  +  G +  
Sbjct: 811  GKAFIRRVLPYRSYSGDHDGIVLTFTDVTQLRESEELFQSLVRASAQIVWIANADGVVES 870

Query: 218  ANISYKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
             + S+++ T        G+ +   I    +   +++    ++            +   HG
Sbjct: 871  DSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDRPLVLEYRLRNR--HG 928

Query: 273  NNKSYKIVRVLN--SFG----EAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIF 322
              + +++         G      G+ ID+  +     +L     H   +++N    + + 
Sbjct: 929  EYRWFQVRTAPQRRPDGTVNRWVGMNIDIHDQKQSRLELADREAHLRRVINNQLGLVGVI 988

Query: 323  DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            D+N  L   +   +E   ++   +   P ++             +    +  ++ +   +
Sbjct: 989  DRNGLLLEVDDRSLEYARVNRHEVIGKPFHEAPWWNY-------DPNVAQQMRDAMERAF 1041

Query: 383  KSSETHKDTW---HLPNGQTLHVIVTS--NPRGGTIWMF---ENLTVQVDLETKYNTLVK 434
            K      D     H  +G  +  ++    +  G   ++     ++  +   E K   +  
Sbjct: 1042 KGEPVRYDVSLFAHGDDGVLIDFMIAPVFDDDGNIEYLIPSGVDIRDRKKAELKQQEVAV 1101

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                  +   +G+      G I   N A   ++    + L+ G++I  +        ++ 
Sbjct: 1102 RLEAIFNTAVDGIITIDRRGTINSVNVAAAKIFGYGVDELT-GSNINALIPEPEHSEHDG 1160

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRA 551
                      +     ++ + G  +  S   L+ S+         + +    +V+D VR+
Sbjct: 1161 YLKAYEETGQSHIIGHQRQVTGRRKDGSTFSLDLSVSETSLSGEHRYVGIVRDVSDRVRS 1220

Query: 552  ERALTEKNEALRKADEI 568
            E+A    +  ++ A   
Sbjct: 1221 EQAKKNASRRMQMALRA 1237


>gi|161522483|ref|YP_001585412.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160346036|gb|ABX19120.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 799

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 103/502 (20%), Positives = 193/502 (38%), Gaps = 32/502 (6%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L+ L   +   D N  L + N +   L        A     D L    R   ++ 
Sbjct: 160 QFEALLNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRV- 218

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--------RGGTIWMFEN 418
                 +  E+     +++   +       G+ + V  T+ P         G  + +   
Sbjct: 219 ----QTSAVEHALGGTRTT-CERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLL--- 270

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
                  +       +V+   +D   + +     D RI   NPA + ++  +E       
Sbjct: 271 --RDASADRARADAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRR 328

Query: 479 HIRNIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSII 531
               IA    + +     +D    I+          D  R         +     +   +
Sbjct: 329 FDSLIAMRWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVAL 388

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +   +T         + R+ R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ 
Sbjct: 389 SITLRETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWI 448

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L+ S   +L   + Q ++ I  S+  L  +V DILD +++  G ++L+   + +  L 
Sbjct: 449 EVLRNSGDDAL---RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLF 505

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V  +  T      I ++  S         D +RL Q+ S ++SNA+ F+  G  V + 
Sbjct: 506 ADVVAAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVS 565

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            A D+   + +V + G  I  +    VF+ F          RRG+GLGLSIV   + LHG
Sbjct: 566 VAHDDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHG 625

Query: 770 GHVSISSSD-EGVTTINCRIPS 790
           G V + S+     TT   ++P+
Sbjct: 626 GTVVVDSAGRNRGTTFTVKLPA 647



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 48/162 (29%), Gaps = 12/162 (7%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT-ETEGIVFQKAIGESRKLFKEEIKKRMI 253
           F+ L ++L   V   D  G + + N +              +A+ +  +L   + ++   
Sbjct: 161 FEALLNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQT 220

Query: 254 SSSALEKNFCET---VSTLEHGNNKSYKIVRVLNSFGEAGIAID--------VSKEITVN 302
           S+         T      L     +   +        +A   +D         S +    
Sbjct: 221 SAVEHALGGTRTTCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 280

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           D       ++     A+   D++  +   N +   ++  D  
Sbjct: 281 DAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEE 322


>gi|150017918|ref|YP_001310172.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904383|gb|ABR35216.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1024

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 106/532 (19%), Positives = 212/532 (39%), Gaps = 56/532 (10%)

Query: 294 DVSKEIT---VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW-------EIDL 343
           D+++++    + +Q      I+ N++  +   D+   +   N S  + +       +I  
Sbjct: 359 DITEKVQAKIIEEQKNKLEAIIRNMSEGLFTIDKEGNINILNSSAKDFFYNIDLANKISE 418

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            FL          +   +  K     +++  K    + Y+ +   K       G   H  
Sbjct: 419 NFLKVK-----FYDSNDNIIKPENLPSYRVLKGEKINEYRMTLKRK-------GLEYHFN 466

Query: 404 VTSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           V+ +P     G  +       N+T QV+  T      K     I+++S+ + +   +G+I
Sbjct: 467 VSGSPLYDEDGDIVKALLCTRNVTEQVNSNTIIKMQKKQLEAVIENISDAIYIADKEGKI 526

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N   R L       +                 NE    +L  ++  +   E+   + 
Sbjct: 527 ILMNAEGRGLLSDY-YAVKNADDFNITKQAFDTSGNEIHVENL--SLKCALRGEKIKNRT 583

Query: 517 TLELLSDSVLEYSI--IPLPNAQT-----MLTFVNVTDSVRAE-------RALTEKNEAL 562
            +   SD  L   +   P+ +        +  + ++TD    E       R L    E  
Sbjct: 584 IIIKRSDKELTIRVNSTPIYDTSGNLIMALACYHDITDLAEKEKIIVEKYRQLEVLKEEA 643

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A++IK+ F+ ++S+E+R+P+  I G   LL+ +    ++ +QS+Y+  +  S   LL 
Sbjct: 644 EIANKIKSLFLDNMSHEIRTPMNGIFGTIQLLEKT---PMSEEQSKYITLLKNSGNKLLT 700

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-V 681
           ++N+ILD++ ++AGI KLN     L  + +++  ++    +   + I+   D       +
Sbjct: 701 IINNILDISKIEAGIHKLNDGKFALKKITDDIYTNLLESGNSKGLEIRYYFDPNAEFIAI 760

Query: 682 ADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  +L QI   ++SNA+ F+ KG        + +  D     F++ + G  I E     
Sbjct: 761 GDELKLKQILDNLISNAVKFTEKGYISFRVTKVSSDNDYVKIKFTIADTGIGIDERFKSK 820

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +F  F        ++  G GLGLSI +    +  G++S  S+    +T    
Sbjct: 821 IFGIFSQGDISVNKKYTGTGLGLSISKQLAMMMNGNISFESTLGEGSTFTFT 872



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 66/181 (36%), Gaps = 18/181 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++   +  +      I+      I+IFD++  L   ++  +EL++ +            +
Sbjct: 236 AQAAEIERRDKKIEAIMDLADEQISIFDKSGRLIKISKVILELFQAN--------KISNI 287

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPR---- 409
            +            N   ++E+ FS  +  +   +   +   + L  HV+++  P     
Sbjct: 288 NDIKDEIIIFDVNKNKIEFEESKFSYIEKGKEINNYRVIIGTRNLEKHVVISGKPIFDRK 347

Query: 410 ---GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 + + +++T +V                I ++SEG+     +G I + N + +  
Sbjct: 348 GNFERYVLIIDDITEKVQA-KIIEEQKNKLEAIIRNMSEGLFTIDKEGNINILNSSAKDF 406

Query: 467 W 467
           +
Sbjct: 407 F 407


>gi|260684073|ref|YP_003215358.1| putative sensor histidine kinase [Clostridium difficile CD196]
 gi|260687732|ref|YP_003218866.1| putative sensor histidine kinase [Clostridium difficile R20291]
 gi|260210236|emb|CBA64481.1| putative sensor histidine kinase [Clostridium difficile CD196]
 gi|260213749|emb|CBE05667.1| putative sensor histidine kinase [Clostridium difficile R20291]
          Length = 895

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 248/630 (39%), Gaps = 69/630 (10%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L    S  +   D     +    + G+I +AN S++          Q  + +  K F + 
Sbjct: 280 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFG--DYKEQDKLTDKIKNFNDL 337

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVN 302
           I + +      EKN  + +ST    +NK Y+     ++    + G   +  D +K+    
Sbjct: 338 I-ESIHYVFVHEKNAEKLISTS---DNKVYQAIFAPLIIASQTEGVLCVLEDKTKKKEYE 393

Query: 303 DQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +L      + + L ++   I + + N  + + N +  E+++ +L  +            
Sbjct: 394 RKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLESID----------- 441

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTI 413
                               FS+   SE   +  ++ +G+  +V +     T+     TI
Sbjct: 442 --------------------FSLVCKSEESIEKRYVIDGEVKYVEMSFSQYTNAGTNKTI 481

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  + T +   + K           ID L +G+ +   D  I  +N +F  +       
Sbjct: 482 IVIRDTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTNID 541

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSII 531
               ++I+ +        N  +       +    ++ R  L    EL++  D ++E  + 
Sbjct: 542 DIKDSNIKLLMNA-----NTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELS 596

Query: 532 PLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            LP    N + ++  +      +      ++     K D+IK  F  ++S+EL++PL  I
Sbjct: 597 ALPFAIYNTRYIMLIIKDLVHKKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVI 656

Query: 588 IGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
                L+    +  K+   N+    +V+ +  SS  L  L+N+I+DL  +++G   L  +
Sbjct: 657 SSSNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLA 716

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ ++  +I       +I+I   +D +  +   D+  + +I   +LSN + F+ 
Sbjct: 717 KYNIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTD 776

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            G  + +         I SVK+ G  IP+D  + +F  F            G G+GL+IV
Sbjct: 777 NGGWIYVSIHYKIDKVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIV 836

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ ++LHGG + + S     T     +P K
Sbjct: 837 KNLVSLHGGDIEVVSEVNKGTEFLISLPMK 866



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 420 TVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T +++ L+            T+D     + VF  DG I  +N +FR+ +   + +     
Sbjct: 270 TEKIEELKGILMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTD 329

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----P 534
            I+N               DL  +I   F  E K+ +  +    + V +    PL     
Sbjct: 330 KIKN-------------FNDLIESIHYVFVHE-KNAEKLISTSDNKVYQAIFAPLIIASQ 375

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               +    + T     ER L        +A++    F++ +
Sbjct: 376 TEGVLCVLEDKTKKKEYERKLI-------EANKRSKDFLESI 410


>gi|255307522|ref|ZP_05351693.1| putative sensor histidine kinase [Clostridium difficile ATCC 43255]
          Length = 912

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 248/630 (39%), Gaps = 69/630 (10%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L    S  +   D     +    + G+I +AN S++          Q  + +  K F + 
Sbjct: 297 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFG--DYKEQDKLTDKIKNFNDL 354

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVN 302
           I + +      EKN  + +ST    +NK Y+     ++    + G   +  D +K+    
Sbjct: 355 I-ESIHYVFVHEKNAEKLISTS---DNKVYQAIFAPLIIASQTEGVLCVLEDKTKKKEYE 410

Query: 303 DQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +L      + + L ++   I + + N  + + N +  E+++ +L  +            
Sbjct: 411 RKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLESID----------- 458

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTI 413
                               FS+   SE   +  ++ +G+  +V +     T+     TI
Sbjct: 459 --------------------FSLVCKSEESIEKRYVIDGEVKYVEMSFSQYTNAGTNKTI 498

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  + T +   + K           ID L +G+ +   D  I  +N +F  +       
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTNID 558

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSII 531
               ++I+ +        N  +       +    ++ R  L    EL++  D ++E  + 
Sbjct: 559 DIKDSNIKLLMNA-----NTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELS 613

Query: 532 PLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            LP    N + ++  +      +      ++     K D+IK  F  ++S+EL++PL  I
Sbjct: 614 ALPFAIYNTRYIMLIIKDLVHKKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVI 673

Query: 588 IGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
                L+    +  K+   N+    +V+ +  SS  L  L+N+I+DL  +++G   L  +
Sbjct: 674 SSSNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLA 733

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ ++  +I       +I+I   +D +  +   D+  + +I   +LSN + F+ 
Sbjct: 734 KYNIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTD 793

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            G  + +         I SVK+ G  IP+D  + +F  F            G G+GL+IV
Sbjct: 794 NGGWIYVSIHYKIDKVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIV 853

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ ++LHGG + + S     T     +P K
Sbjct: 854 KNLVSLHGGDIEVVSEVNKGTEFLISLPMK 883



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 420 TVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T +++ L+            T+D     + VF  DG I  +N +FR+ +   + +     
Sbjct: 287 TEKIEELKGILMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTD 346

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----P 534
            I+N               DL  +I   F  E K+ +  +    + V +    PL     
Sbjct: 347 KIKN-------------FNDLIESIHYVFVHE-KNAEKLISTSDNKVYQAIFAPLIIASQ 392

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               +    + T     ER L        +A++    F++ +
Sbjct: 393 TEGVLCVLEDKTKKKEYERKLI-------EANKRSKDFLESI 427


>gi|255093477|ref|ZP_05322955.1| putative sensor histidine kinase [Clostridium difficile CIP 107932]
          Length = 908

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 248/630 (39%), Gaps = 69/630 (10%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L    S  +   D     +    + G+I +AN S++          Q  + +  K F + 
Sbjct: 297 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFG--DYKEQDKLTDKIKNFNDL 354

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVN 302
           I + +      EKN  + +ST    +NK Y+     ++    + G   +  D +K+    
Sbjct: 355 I-ESIHYVFVHEKNAEKLISTS---DNKVYQAIFAPLIIASQTEGVLCVLEDKTKKKEYE 410

Query: 303 DQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +L      + + L ++   I + + N  + + N +  E+++ +L  +            
Sbjct: 411 RKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLESID----------- 458

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTI 413
                               FS+   SE   +  ++ +G+  +V +     T+     TI
Sbjct: 459 --------------------FSLVCKSEESIEKRYVIDGEVKYVEMSFSQYTNAGTNKTI 498

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  + T +   + K           ID L +G+ +   D  I  +N +F  +       
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTNID 558

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSII 531
               ++I+ +        N  +       +    ++ R  L    EL++  D ++E  + 
Sbjct: 559 DIKDSNIKLLMNA-----NTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELS 613

Query: 532 PLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            LP    N + ++  +      +      ++     K D+IK  F  ++S+EL++PL  I
Sbjct: 614 ALPFAIYNTRYIMLIIKDLVHKKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVI 673

Query: 588 IGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
                L+    +  K+   N+    +V+ +  SS  L  L+N+I+DL  +++G   L  +
Sbjct: 674 SSSNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLA 733

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ ++  +I       +I+I   +D +  +   D+  + +I   +LSN + F+ 
Sbjct: 734 KYNIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTD 793

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            G  + +         I SVK+ G  IP+D  + +F  F            G G+GL+IV
Sbjct: 794 NGGWIYVSIHYKIDKVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIV 853

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ ++LHGG + + S     T     +P K
Sbjct: 854 KNLVSLHGGDIEVVSEVNKGTEFLISLPMK 883



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 420 TVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T +++ L+            T+D     + VF  DG I  +N +FR+ +   + +     
Sbjct: 287 TEKIEELKGILMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTD 346

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----P 534
            I+N               DL  +I   F  E K+ +  +    + V +    PL     
Sbjct: 347 KIKN-------------FNDLIESIHYVFVHE-KNAEKLISTSDNKVYQAIFAPLIIASQ 392

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               +    + T     ER L        +A++    F++ +
Sbjct: 393 TEGVLCVLEDKTKKKEYERKLI-------EANKRSKDFLESI 427


>gi|254976087|ref|ZP_05272559.1| putative sensor histidine kinase [Clostridium difficile QCD-66c26]
 gi|255315220|ref|ZP_05356803.1| putative sensor histidine kinase [Clostridium difficile QCD-76w55]
 gi|255517889|ref|ZP_05385565.1| putative sensor histidine kinase [Clostridium difficile QCD-97b34]
 gi|255651005|ref|ZP_05397907.1| putative sensor histidine kinase [Clostridium difficile QCD-37x79]
          Length = 912

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 248/630 (39%), Gaps = 69/630 (10%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L    S  +   D     +    + G+I +AN S++          Q  + +  K F + 
Sbjct: 297 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFG--DYKEQDKLTDKIKNFNDL 354

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVN 302
           I + +      EKN  + +ST    +NK Y+     ++    + G   +  D +K+    
Sbjct: 355 I-ESIHYVFVHEKNAEKLISTS---DNKVYQAIFAPLIIASQTEGVLCVLEDKTKKKEYE 410

Query: 303 DQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +L      + + L ++   I + + N  + + N +  E+++ +L  +            
Sbjct: 411 RKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLESID----------- 458

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTI 413
                               FS+   SE   +  ++ +G+  +V +     T+     TI
Sbjct: 459 --------------------FSLVCKSEESIEKRYVIDGEVKYVEMSFSQYTNAGTNKTI 498

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  + T +   + K           ID L +G+ +   D  I  +N +F  +       
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTNID 558

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSII 531
               ++I+ +        N  +       +    ++ R  L    EL++  D ++E  + 
Sbjct: 559 DIKDSNIKLLMNA-----NTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELS 613

Query: 532 PLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            LP    N + ++  +      +      ++     K D+IK  F  ++S+EL++PL  I
Sbjct: 614 ALPFAIYNTRYIMLIIKDLVHKKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVI 673

Query: 588 IGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
                L+    +  K+   N+    +V+ +  SS  L  L+N+I+DL  +++G   L  +
Sbjct: 674 SSSNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLA 733

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ ++  +I       +I+I   +D +  +   D+  + +I   +LSN + F+ 
Sbjct: 734 KYNIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTD 793

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            G  + +         I SVK+ G  IP+D  + +F  F            G G+GL+IV
Sbjct: 794 NGGWIYVSIHYKIDKVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIV 853

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ ++LHGG + + S     T     +P K
Sbjct: 854 KNLVSLHGGDIEVVSEVNKGTEFLISLPMK 883



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 420 TVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T +++ L+            T+D     + VF  DG I  +N +FR+ +   + +     
Sbjct: 287 TEKIEELKGILMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTD 346

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----P 534
            I+N               DL  +I   F  E K+ +  +    + V +    PL     
Sbjct: 347 KIKN-------------FNDLIESIHYVFVHE-KNAEKLISTSDNKVYQAIFAPLIIASQ 392

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               +    + T     ER L        +A++    F++ +
Sbjct: 393 TEGVLCVLEDKTKKKEYERKLI-------EANKRSKDFLESI 427


>gi|126700109|ref|YP_001089006.1| putative sensor histidine kinase [Clostridium difficile 630]
 gi|255101653|ref|ZP_05330630.1| putative sensor histidine kinase [Clostridium difficile QCD-63q42]
 gi|115251546|emb|CAJ69379.1| Two-component sensor histidine kinase,sporulation-associated spo0A
           [Clostridium difficile]
          Length = 912

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 248/630 (39%), Gaps = 69/630 (10%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L    S  +   D     +    + G+I +AN S++          Q  + +  K F + 
Sbjct: 297 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFG--DYKEQDKLTDKIKNFNDL 354

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVN 302
           I + +      EKN  + +ST    +NK Y+     ++    + G   +  D +K+    
Sbjct: 355 I-ESIHYVFVHEKNAEKLISTS---DNKVYQAIFAPLIIASQTEGVLCVLEDKTKKKEYE 410

Query: 303 DQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +L      + + L ++   I + + N  + + N +  E+++ +L  +            
Sbjct: 411 RKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLESID----------- 458

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTI 413
                               FS+   SE   +  ++ +G+  +V +     T+     TI
Sbjct: 459 --------------------FSLVCKSEESIEKRYVIDGEVKYVEMSFSQYTNAGTNKTI 498

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  + T +   + K           ID L +G+ +   D  I  +N +F  +       
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTNID 558

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSII 531
               ++I+ +        N  +       +    ++ R  L    EL++  D ++E  + 
Sbjct: 559 DIKDSNIKLLMNA-----NTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELS 613

Query: 532 PLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            LP    N + ++  +      +      ++     K D+IK  F  ++S+EL++PL  I
Sbjct: 614 ALPFAIYNTRYIMLIIKDLVHKKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVI 673

Query: 588 IGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
                L+    +  K+   N+    +V+ +  SS  L  L+N+I+DL  +++G   L  +
Sbjct: 674 SSSNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLA 733

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ ++  +I       +I+I   +D +  +   D+  + +I   +LSN + F+ 
Sbjct: 734 KYNIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTD 793

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            G  + +         I SVK+ G  IP+D  + +F  F            G G+GL+IV
Sbjct: 794 NGGWIYVSIHYKIDKVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIV 853

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ ++LHGG + + S     T     +P K
Sbjct: 854 KNLVSLHGGDIEVVSEVNKGTEFLISLPMK 883



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 420 TVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T +++ L+            T+D     + VF  DG I  +N +FR+ +   + +     
Sbjct: 287 TEKIEELKGILMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTD 346

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----P 534
            I+N               DL  +I   F  E K+ +  +    + V +    PL     
Sbjct: 347 KIKN-------------FNDLIESIHYVFVHE-KNAEKLISTSDNKVYQAIFAPLIIASQ 392

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               +    + T     ER L        +A++    F++ +
Sbjct: 393 TEGVLCVLEDKTKKKEYERKLI-------EANKRSKDFLESI 427


>gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
 gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
          Length = 1324

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 92/384 (23%), Positives = 161/384 (41%), Gaps = 14/384 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N  +Q   E K     ++  E +D     +    P+G     N  F  L      
Sbjct: 451 IQLTQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLNPEGLYLTVNAKFLDLVGLARQ 510

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +         S+ ++E+      A   TS + E   L    E     V E S   
Sbjct: 511 EVIGKSPYDIFTPAASQCFSEA--HRALALQQTSRNYEVSLLDQKGEQRELLVYEASFGD 568

Query: 533 LPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                   +   +++T+  R E  L +  +      + K  F+ ++S+E+R+P+  I+G 
Sbjct: 569 QREQVHGIVGILLDLTERKRMEEELRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGM 628

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 629 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLHVERIDFNLDDV 685

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ +   I+ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+ +G  VI
Sbjct: 686 LDNLISVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTHQGEIVI 745

Query: 710 LKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
               R   +      F+VK+ G  I ++    +FN F    +    Q  G GLGLSI + 
Sbjct: 746 SARVRQLNEQQVTLFFAVKDTGIGITQEKLAGLFNAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +S  S +   +T    
Sbjct: 806 LVELMGGEISAHSEEGKGSTFEFS 829



 Score = 46.1 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 176 SELAETT-LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
           ++ AE   L  +K+     + + + D+    ++  +  G  L  N  +       G+  Q
Sbjct: 454 TQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLNPEGLYLTVNAKFLDLV---GLARQ 510

Query: 235 KAIGESR-KLFKEEI----KKRMISSSALEKNFCETVSTLEH-GNNKSYKIVRVLNSF-- 286
           + IG+S   +F         +   + +  + +    VS L+  G  +   +         
Sbjct: 511 EVIGKSPYDIFTPAASQCFSEAHRALALQQTSRNYEVSLLDQKGEQRELLVYEASFGDQR 570

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               G  GI +D+++   + ++L    ++   ++ A
Sbjct: 571 EQVHGIVGILLDLTERKRMEEELRDAKKMADAMSQA 606



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 49/157 (31%), Gaps = 20/157 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E  V +Q     EIL      +   +        N  F++L  +    +      D   
Sbjct: 463 AERKVLEQSQLNQEILDATPNPMYCLNPEGLYLTVNAKFLDLVGLARQEVIGKSPYDIF- 521

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------ 410
                    P      +      ++ ++S  ++ +     G+   ++V     G      
Sbjct: 522 --------TPAASQCFSEAHRALALQQTSRNYEVSLLDQKGEQRELLVYEASFGDQREQV 573

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            G + +  +LT +  +E +     K+     D +S+ 
Sbjct: 574 HGIVGILLDLTERKRMEEELRDAKKMA----DAMSQA 606


>gi|121997120|ref|YP_001001907.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588525|gb|ABM61105.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 639

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 104/484 (21%), Positives = 188/484 (38%), Gaps = 20/484 (4%)

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE-QLNWKTWKEN 377
           + + D +  +   NR+++E                E+  F R    LP  +   +     
Sbjct: 20  VFLHDGDYRILRANRAYLEWAGASTEEEVIGRPYWEV--FPRGDGPLPACRRAMEQLGAG 77

Query: 378 IFSVYKSSETHKDTWHLPNGQTLH-----VIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
                   E+ ++   LP+G+        V         ++ + E++T Q  LE      
Sbjct: 78  SPQAGDGVESSEEI-ELPSGEIFRSRSYTVREADGSYRCSVHILEDITEQRRLEQARQGA 136

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                       + + +   D R+   N AF +L   E   L        +A +  R   
Sbjct: 137 EAKVKAIAAAARDAIVLIDDDDRLVYCNAAFEALLGYEAGELVGSPFHEQVAPSRYRTSA 196

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            +           +  D+R  ++       +  LE S+ PL           + D     
Sbjct: 197 RTGMRRFRVCGGGAVIDQRTEIEALHRDGHEVPLELSVSPLQLDGRWHAVGVMRDISE-R 255

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL    +     +  +N F+  +S++LR+PL  I+GFTDLL  S+   L+++Q  +V  
Sbjct: 256 RALEVDRQRA---EADRNIFLAAISHDLRTPLNAIVGFTDLLARSE---LDTEQRHHVGL 309

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
             ++S  LL L++ +L+L+ ++AG ++L      L   L      +     E  + +   
Sbjct: 310 CRSASQTLLGLIDTVLELSRLEAGRVELRDERFNLPAFLTTQIGLLQPMAEEKGLSLIWS 369

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            +  +      D  R  Q+   ++SNA+ F+  GS  +  A    G  +F+V + G  IP
Sbjct: 370 LEPDMPGWVRGDPVRFGQVLYNLVSNALKFTETGSIRVDGARSTCGRLMFTVADTGPGIP 429

Query: 732 EDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCRI 788
           E     +F+ F        ++ G GLGL I +  + L GG + + S+    TT      +
Sbjct: 430 EADQGRIFDAFCQGGPVLARKEGSGLGLKICQELVRLMGGTIQLVSTPGVGTTFRFTVTL 489

Query: 789 PSKE 792
           PS E
Sbjct: 490 PSAE 493



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 88/265 (33%), Gaps = 31/265 (11%)

Query: 205 LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKK------------- 250
           LV+  D    IL AN +Y +         ++ IG    ++F                   
Sbjct: 19  LVFLHDGDYRILRANRAYLEWAGAS--TEEEVIGRPYWEVFPRGDGPLPACRRAMEQLGA 76

Query: 251 -RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-GEAGIAIDVSKEITVNDQLT-- 306
               +   +E +    + + E   ++SY +     S+     I  D++++  +       
Sbjct: 77  GSPQAGDGVESSEEIELPSGEIFRSRSYTVREADGSYRCSVHILEDITEQRRLEQARQGA 136

Query: 307 --HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE-FLRSAN 363
                 I      AI + D +  L + N +F  L   +   L  +P ++++     R++ 
Sbjct: 137 EAKVKAIAAAARDAIVLIDDDDRLVYCNAAFEALLGYEAGELVGSPFHEQVAPSRYRTSA 196

Query: 364 KLPEQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGT---IWMFENL 419
           +   +         +       E  H+D   +P    L + V+     G    + +  ++
Sbjct: 197 RTGMRRFRVCGGGAVIDQRTEIEALHRDGHEVP----LELSVSPLQLDGRWHAVGVMRDI 252

Query: 420 TVQVDLETKYNTLVKVQGETIDHLS 444
           + +  LE         +   +  +S
Sbjct: 253 SERRALEVDRQRAEADRNIFLAAIS 277


>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
 gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
          Length = 1343

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 160/375 (42%), Gaps = 12/375 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q++ E + +  +K+  + I+ +          G     N AF          +   T + 
Sbjct: 449 QMEAEQRISEQLKLNQQIINAIPNPTYFRDTQGAYIGVNDAFTDFLGLFYIDVVDKTPLE 508

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +  + E +         T ++ E  +  G + +L+     Y          +  
Sbjct: 509 LFAKDVANMFTEKERELFENPGSTVYNIELANSHGDVRILNVYEATYYGTDGDPMGIVGL 568

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           FV+VT   R E  L    +   +A + K  F+ ++S+E+R+P+  I+G + L     L  
Sbjct: 569 FVDVTKQKRLESDLIAAKDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLAL---LTD 625

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN KQ  YV  I  +   LL ++NDILD + ++AG + + +     +++L+ +   I+ K
Sbjct: 626 LNDKQRNYVGNIEKAGKSLLGIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVK 685

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--- 717
             E  + +    D  L    V D  RL QI   +  N++ F+  G  +I++A +      
Sbjct: 686 AKEKELELIFDIDPNLPDDLVGDPLRLGQIIINLTGNSVKFTESGE-IIIRARKVTDVNE 744

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
             +  F +++ G  + E+    +F  F         +  G GLGL+I +SF+ L GG + 
Sbjct: 745 IIEIQFDIEDTGIGMNEEQLGRLFQSFSQADGSITRKYGGTGLGLTISKSFVELMGGRIW 804

Query: 774 ISSSDEGVTTINCRI 788
           + S     +T +  I
Sbjct: 805 VESQPGKGSTFSFTI 819



 Score = 37.6 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 53/141 (37%), Gaps = 16/141 (11%)

Query: 178 LAETTLK-CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGI 231
            AE  ++  +++S  + + + + +++    + RD  G  +  N ++         +    
Sbjct: 445 NAEMQMEAEQRISEQLKLNQQIINAIPNPTYFRDTQGAYIGVNDAFTDFLGLFYIDVVDK 504

Query: 232 VFQKAIGESRK-LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +   +    +F E+ ++   +  +   N     S   HG+ +   +          +
Sbjct: 505 TPLELFAKDVANMFTEKERELFENPGSTVYNIELANS---HGDVRILNVYEATYYGTDGD 561

Query: 285 SFGEAGIAIDVSKEITVNDQL 305
             G  G+ +DV+K+  +   L
Sbjct: 562 PMGIVGLFVDVTKQKRLESDL 582


>gi|323699593|ref|ZP_08111505.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459525|gb|EGB15390.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1165

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 92/518 (17%), Positives = 197/518 (38%), Gaps = 51/518 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID----------LAF 345
            +   + +       +      AI I D    +   N+  +E++ ++             
Sbjct: 396 ERTSKLRESEEVLRTVFDFAYDAIIIHDGQGRILEVNQRMIEMFGLEGMDPSGVSLAQDL 455

Query: 346 LATNPSNDELLEFLRS-ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            + +     +   +R   +  P  L W+         Y+ S       HL         +
Sbjct: 456 SSPDNPLHAMAGIMREVLDGRPHHLEWRV------RRYRDSREFDVEVHL-------TRI 502

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           T       +    +++V+ + E      +      +++   G+A+     RI   N    
Sbjct: 503 TYRGEEAILANVRDISVRKESENSIRQNLVKFEAILENSLMGIAMT-VGRRIVTINRRGA 561

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA----AIITSFDDERKSLQGTLEL 520
            ++      +       N       +Y   D + L A    A    F+ E+         
Sbjct: 562 EIFGYSPEEMQ-----DNTLNLLLGHYQTQDEFVLAAKAALAERGEFNTEQAFRSKNGST 616

Query: 521 LSDSVLEYSIIPLP-NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +   +   ++ P       +  + +VT++ +A+  L    E    A+  K+ F+  +S+E
Sbjct: 617 VWCRMYAKTVDPGDLTRGVIWAWDDVTENRKAQEDLLRTREDAEAANRAKSEFLAAMSHE 676

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  I+G T++   +    L   Q  Y++ +  S+  LL+++NDILDL+ ++A  ++
Sbjct: 677 IRTPMNAIVGMTEI---TLQTDLTDDQRDYLKTVKDSAQHLLSIINDILDLSKIEARKLE 733

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
           L++    L   +    + +  +  +  + + +  D    + V  D   L Q+   +  NA
Sbjct: 734 LDHVDFDLPFHVRTTIKGLEVQARQKGLDMVLEIDEAAPNCVKGDPLSLRQVLVNLAGNA 793

Query: 699 MDFSSKGSTVILKAARDNG---------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + F+ +G T+ ++     G            F+V++ G  IP +   S+F  F       
Sbjct: 794 IKFTHRG-TIAIRVGPGQGPAPDEARTVGVAFAVEDTGIGIPREFLDSIFQSFSQ--TTR 850

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              G GLGL+I +  I+L GG + + S+    +T +  
Sbjct: 851 AFGGTGLGLAICKQLISLMGGDIVVESTVGKGSTFSFT 888



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 88/294 (29%), Gaps = 35/294 (11%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF------ 233
               +  KL     V + +FD     +   D  G IL  N    +    EG+        
Sbjct: 393 RVKERTSKLRESEEVLRTVFDFAYDAIIIHDGQGRILEVNQRMIEMFGLEGMDPSGVSLA 452

Query: 234 QKAIGESRKLFKEE-IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
           Q        L     I + ++        +           +    + R+     EA +A
Sbjct: 453 QDLSSPDNPLHAMAGIMREVLDGRPHHLEWRVRRYRDSREFDVEVHLTRITYRGEEAILA 512

Query: 293 --IDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
              D+S     E ++   L     IL N  + IA+    R +   NR   E++      +
Sbjct: 513 NVRDISVRKESENSIRQNLVKFEAILENSLMGIAMT-VGRRIVTINRRGAEIFGYSPEEM 571

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIV 404
             N + + LL          +  +            +     +  +   NG T+   +  
Sbjct: 572 QDN-TLNLLLGHY-------QTQDEFVLAAKAALAERGEFNTEQAFRSKNGSTVWCRMYA 623

Query: 405 TSNPRG----GTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
            +   G    G IW ++++T     +              + + E +  +S  +
Sbjct: 624 KTVDPGDLTRGVIWAWDDVTENRKAQEDLLRTREDAEAANRAKSEFLAAMSHEI 677



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 55/184 (29%), Gaps = 21/184 (11%)

Query: 412 TIWMFENLTVQVDLETKYNTL------------------VKVQGETIDHLSEGVAVFGPD 453
            + +  N+T +   E +  T                    +V     D   + + +    
Sbjct: 366 ILALVLNITRRRRAEKELRTAHRTLEERVKERTSKLRESEEVLRTVFDFAYDAIIIHDGQ 425

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           GRI   N     ++  E    S  +  +++++  +  +  +    +   ++       + 
Sbjct: 426 GRILEVNQRMIEMFGLEGMDPSGVSLAQDLSSPDNPLHAMAG---IMREVLDGRPHHLEW 482

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                    +  +E  +  +          NV D    + +     + L K + I  + +
Sbjct: 483 RVRRYRDSREFDVEVHLTRITYRGEEAILANVRDISVRKESENSIRQNLVKFEAILENSL 542

Query: 574 QHVS 577
             ++
Sbjct: 543 MGIA 546


>gi|294508545|ref|YP_003572604.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|294344874|emb|CBH25652.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 959

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 121/812 (14%), Positives = 290/812 (35%), Gaps = 65/812 (8%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
             + + G +A +     +    ++R R  LA +  E       +    +  + LL   + 
Sbjct: 163 SPLVLCGGMAMVAFVVGVVARWVLRVRRHLADQARELEEQRDRLEGHRAYTNRLLNATDD 222

Query: 82  LTIVWDGKDETPEIIGQ--LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ 139
           L    D      +      L       +    + + ++++      +  +A  ++ + G 
Sbjct: 223 LFFALD-PTGQFQWWNDRVLETTGLSDEDVGSVDALDHFVPAEREKQAKQAIRRVLQTGS 281

Query: 140 SF-DLVAETQNDCAI--KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
              ++     +  A+  +  G    +    R +   G    +AE   + ++L      F+
Sbjct: 282 GQVEVPLVADDGVAVPYEFVGNPVENLEGERQIVCVG--RNVAERKRRERELRESERRFQ 339

Query: 197 VLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQKAIGESRKLFKEEIKKR 251
            + +  + L       G     N +          +  G  F +      +  +  ++K+
Sbjct: 340 AMLNDPNILAGVLSPDGTFQKVNDTALGYIEATRADVLGRPFWETPWWETEN-RSAVRKK 398

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAG----IAIDVSKEITVNDQL 305
           +   +  E    E       G  ++    +  V    GE       A D+++     + L
Sbjct: 399 VERVAEGEYMRFEAEHVTPDGEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRREEAL 458

Query: 306 T----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                    ++ N    + +FD++          +    +  + +     +D     L  
Sbjct: 459 QVAEGRYRALIENFPGGVFLFDEDLQYTLAGGRELRDAGLSPSDVEGGGPHDIFPAALAE 518

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
              +        ++  +     + E   D     N +TL V   +      + + +++T 
Sbjct: 519 ELDM-------YFRRALNGEKNAFEQTMDGRRYFN-RTLPVRDEAGTVIAGMAVAQDITE 570

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFR--------SLWKTEEN 472
           +   + K      +     +  + G   +  D G + L++ A+R         +     +
Sbjct: 571 ERRRKEKLERKNDLFQRAQEIANVGGWEYDLDTGALTLTDQAYRIHGVSPGAKMTLERSH 630

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSII 531
            L              R   +   +D+ A +IT   +E+    +G  +      +     
Sbjct: 631 GLYHPNDRWEAEEAFRRAAEDGVPYDVEARLITDAGEEKWIRTRGAPQQDDGRTVRVR-- 688

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPL 584
                    T  ++TD    E+AL         A         +K++F+ ++S+E+R+PL
Sbjct: 689 --------GTIQDITDQKEREQALRTAKADAEAARQEAEEASRLKSAFLANISHEIRTPL 740

Query: 585 TNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           T+IIGF +L+  +   L   +S    Y   I  S   LL  +  +L+L+ + +G MKL  
Sbjct: 741 TSIIGFAELIGSEAGALDLSDSPLPGYATMIERSGKRLLETLEGVLNLSKLQSGQMKLET 800

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + + LN+ +    Q +  K  E  +R+++ +   +     D   +  +   ++SNA+ ++
Sbjct: 801 APVDLNEQIRWAVQELRPKAEEKGVRLQLETGCAVAE--GDEGGIQIVIRNLVSNAIKYT 858

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
            +G  + +++ ++    +  V++ G  +   + +S+F  F   +     +  G G+GL++
Sbjct: 859 EQGGHIWVRSFQNEDRAVLEVEDTGIGMDPAVAESLFEPFRQASEGLNREYEGTGVGLAV 918

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               +    G + + +  +  T    ++P+ E
Sbjct: 919 TNKAVAQMDGSIEVDTEKDEGTRFTIQLPASE 950


>gi|148654385|ref|YP_001274590.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566495|gb|ABQ88640.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 687

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 132/255 (51%), Gaps = 3/255 (1%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T++  V    ++R    L  +  A   A +IK+ F+ ++S+ELR+PL +II FT ++ T 
Sbjct: 164 TVIVMVRQVVAMRENVRLATERAAAEHASQIKSEFLANMSHELRTPLNSIINFTRIISTG 223

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G +  +Q  Y+  +  S   LL L+NDILDL+ ++AG M+L   +  + DL+  V  +
Sbjct: 224 ARGPVTPEQIDYLNRVRQSGEHLLGLINDILDLSKIEAGRMELFRESFQIGDLIQSVLAT 283

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            +  + E  I ++      L    ADR R+ Q+   +LSNA  F+  G T+ + A   NG
Sbjct: 284 ASGLVKEKPIELRSEIAPHLPPVYADRTRVRQVLLNLLSNAAKFTDAG-TITVHAEGCNG 342

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
           + +  V + G  I  +  + +F  F    +   RR  G GLGL+I    ++LHGG + + 
Sbjct: 343 EIVIHVSDTGIGIAPEHLEKIFEAFRQLDNASNRRYEGTGLGLAICRRLVDLHGGRLWVE 402

Query: 776 SSDEGVTTINCRIPS 790
           S+    +T +  +P 
Sbjct: 403 SAVGVGSTFSFSLPL 417


>gi|288942103|ref|YP_003444343.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897475|gb|ADC63311.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 873

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 98/499 (19%), Positives = 201/499 (40%), Gaps = 33/499 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQF-HNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                +     + I I D    L    NR+  E         A       + ++   AN+
Sbjct: 16  ARLRTLFELAPLGIVIIDPESMLPLEFNRAAHEQLGYSAEEFA----RLRIADY--EANE 69

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNG--QTLHVIVTSNPRGGT---IWMFEN 418
            PE +     + ++ ++        +T H   +G  + ++V+V   P  G      ++ +
Sbjct: 70  DPEDV-----QRHVQALLTQGYDDFETRHRCRDGSFRHVNVLVQVLPVDGRRMFYAIYRD 124

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T     E +            +    G+A+  PDG     N A   +   +E+ L    
Sbjct: 125 ITESRLAEERLRRSEAKFRAAFEIAPHGMALIAPDGHWLQVNQALCRILGYDESELLV-R 183

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ- 537
             ++I+       +      L +        E++ L    + +   +L  S +     + 
Sbjct: 184 DFQSISHPEDLAADLVYLEQLVSGATDRIQFEKRYLHRQGQPIP-VMLSVSAVRDEWGRL 242

Query: 538 --TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +   +++T+   +E A+ +  E    A+  K+ F+ ++S+E+R+PL  IIG   LL 
Sbjct: 243 SRMVAHVLDLTERKASEEAMRQAMETAEVANRAKSEFLANMSHEIRTPLNAIIGLGQLLL 302

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+S+Q  Y+  I   S  LL ++ND+LD + ++AG ++L+     +  +L+++ 
Sbjct: 303 DS---GLDSRQRDYMNKIRQGSDALLRILNDVLDYSKIEAGQIQLDTVDFRIEAVLDQLT 359

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
              +       + +    D +    +  D  RL Q+ + ++ NA+ F+ +G   + ++A 
Sbjct: 360 ALFSLAAESKGLALYYHLDPRTPQVLRGDPMRLGQVLNNLVGNAVKFTERGFVELRIRAL 419

Query: 714 RDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
           R++       FSV++ G  + +   + +F  F         +  G GLGLSI      L 
Sbjct: 420 REDQGQIQLAFSVRDTGIGMDQASIEHLFQSFTQADCSITRRYGGTGLGLSISRQLAQLM 479

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG + + S     +    +
Sbjct: 480 GGDIRVRSRLGIGSVFRFK 498



 Score = 44.9 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 84/267 (31%), Gaps = 25/267 (9%)

Query: 63  SEICDQLSKYHSLLTENNCLTIVWDGKDETP-EIIGQLHQRIDIPQTDTDLLSFENWLKF 121
           S+     ++  +L        ++ D +   P E     H+++     +   L   ++   
Sbjct: 9   SDTPSSEARLRTLFELAPLGIVIIDPESMLPLEFNRAAHEQLGYSAEEFARLRIADYEAN 68

Query: 122 HHYIKLSKATEKLRKEG-QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY----- 175
                + +  + L  +G   F+     ++     +          +++L +DG       
Sbjct: 69  EDPEDVQRHVQALLTQGYDDFETRHRCRDGSFRHV-------NVLVQVLPVDGRRMFYAI 121

Query: 176 -SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
             ++ E+ L  ++L    + F+  F+     +      G  L  N +  +    +     
Sbjct: 122 YRDITESRLAEERLRRSEAKFRAAFEIAPHGMALIAPDGHWLQVNQALCRILGYDESELL 181

Query: 235 ----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSFG- 287
               ++I     L  + +    + S A ++   E       G        +  V + +G 
Sbjct: 182 VRDFQSISHPEDLAADLVYLEQLVSGATDRIQFEKRYLHRQGQPIPVMLSVSAVRDEWGR 241

Query: 288 ---EAGIAIDVSKEITVNDQLTHTYEI 311
                   +D+++     + +    E 
Sbjct: 242 LSRMVAHVLDLTERKASEEAMRQAMET 268



 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 84/278 (30%), Gaps = 29/278 (10%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWA-NISYKKNTETEGIVFQKAIGESRK--LFKEEIK 249
           +  + LF+     +   D    +    N +  +        F +      +     E+++
Sbjct: 16  ARLRTLFELAPLGIVIIDPESMLPLEFNRAAHEQLGYSAEEFARLRIADYEANEDPEDVQ 75

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGE---AGIAIDVSK----EITV 301
           + + +      +  ET      G+ +   + V+VL   G      I  D+++    E  +
Sbjct: 76  RHVQALLTQGYDDFETRHRCRDGSFRHVNVLVQVLPVDGRRMFYAIYRDITESRLAEERL 135

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP--SNDELLEFL 359
                            +A+   + +    N++   +   D + L      S     +  
Sbjct: 136 RRSEAKFRAAFEIAPHGMALIAPDGHWLQVNQALCRILGYDESELLVRDFQSISHPEDLA 195

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT---IWMF 416
                L + ++  T +      ++    H+    +P    L V    +  G     +   
Sbjct: 196 ADLVYLEQLVSGATDRIQ----FEKRYLHRQGQPIP--VMLSVSAVRDEWGRLSRMVAHV 249

Query: 417 ENLTVQVDLETKYNT-------LVKVQGETIDHLSEGV 447
            +LT +   E              + + E + ++S  +
Sbjct: 250 LDLTERKASEEAMRQAMETAEVANRAKSEFLANMSHEI 287


>gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 483

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 155/389 (39%), Gaps = 20/389 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +   Q   E +           +  +  GV      GR+   NP    L    +   + 
Sbjct: 59  RDSEQQRQTEQRLRDSEGRLSSILQSIGAGVIATDQQGRLAFLNPVAERLTG-WDLVDAL 117

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +  + A       +     L   +      D R+ L  T        +  ++ P+ +
Sbjct: 118 NRPVGEVLALTDEESGQPLPSPLKQVLEDGEIIDWRERLMLTPRRGEPCPVACTVAPIAS 177

Query: 536 AQTMLTFVNVTDSVRAERALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              ++  V V    R ER +        E    A   K  F+  +S+E+R+PLT ++G  
Sbjct: 178 FSGIIGAVFVFRDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMA 237

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLL  ++   L+S Q QYV    A+   LL+L+N ILDL+ ++AG +++      L+ L+
Sbjct: 238 DLLDKTR---LDSHQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLV 294

Query: 652 NEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            +  + +  +  +  +     S        + D  R+ Q+   ++ NA+ F+ +G  V++
Sbjct: 295 RQTCEIMNLRARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEEG-RVMV 353

Query: 711 KAA-------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           + A            F  +V + G  IP    + +F  F         +  G GLGL+I 
Sbjct: 354 ELACLPAAPPYPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAIS 413

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
              + + GG +S+ S + G +T    IP 
Sbjct: 414 RKLVTMMGGQISLVSREGGGSTFTMEIPL 442



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 20/165 (12%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           AG   D  ++     +L         IL ++   +   DQ   L F N     L   DL 
Sbjct: 55  AGFRRDSEQQRQTEQRLRDSEGRLSSILQSIGAGVIATDQQGRLAFLNPVAERLTGWDLV 114

Query: 345 FLATNPSNDELLEFLRSANKLP---------EQLNWKTWKENIFSVYKSSETHKDTWHLP 395
                P   E+L      +  P         E      W+E +    +  E        P
Sbjct: 115 DALNRP-VGEVLALTDEESGQPLPSPLKQVLEDGEIIDWRERLMLTPRRGEP------CP 167

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
              T+  I + +   G +++F +   + ++++      +     +
Sbjct: 168 VACTVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAEGAL 212


>gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 699

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 156/389 (40%), Gaps = 20/389 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +   Q   E +           +  +  GV      GR+   NP    L    +   + 
Sbjct: 59  RDSEQQRQTEQRLRDSEGRLSSILQSIGAGVIATDQQGRLAFLNPVAERLTG-WDLVDAL 117

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +  + A       +     L   +      D R+ L  T        +  ++ P+ +
Sbjct: 118 NRPVGEVLALTDEESGQPLPSPLKQVLEDGEIIDWRERLMLTPRRGEPCPVACTVAPIAS 177

Query: 536 AQTMLTFVNVTDSVRAERALTEK----NEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              ++  V V    R ER +        E    A   K  F+  +S+E+R+PLT ++G  
Sbjct: 178 FSGIIGAVFVFRDTRREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMA 237

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLL  ++   L+S+Q QYV    A+   LL+L+N ILDL+ ++AG +++      L+ L+
Sbjct: 238 DLLDKTR---LDSQQRQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLV 294

Query: 652 NEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            +  + +  +  +  +     S        + D  R+ Q+   ++ NA+ F+ +G  V++
Sbjct: 295 RQTCEIMNLRARQQGLEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEEG-RVMV 353

Query: 711 KAA-------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           + A            F  +V + G  IP    + +F  F         +  G GLGL+I 
Sbjct: 354 ELACLPAAPPYPGPFFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAIS 413

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
              + + GG +S+ S + G +T    IP 
Sbjct: 414 RKLVTMMGGQISLVSREGGGSTFTMEIPL 442



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 20/165 (12%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           AG   D  ++     +L         IL ++   +   DQ   L F N     L   DL 
Sbjct: 55  AGFRRDSEQQRQTEQRLRDSEGRLSSILQSIGAGVIATDQQGRLAFLNPVAERLTGWDLV 114

Query: 345 FLATNPSNDELLEFLRSANKLP---------EQLNWKTWKENIFSVYKSSETHKDTWHLP 395
                P   E+L      +  P         E      W+E +    +  E        P
Sbjct: 115 DALNRP-VGEVLALTDEESGQPLPSPLKQVLEDGEIIDWRERLMLTPRRGEP------CP 167

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
              T+  I + +   G +++F +   + ++++      +     +
Sbjct: 168 VACTVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAEGAL 212


>gi|153009989|ref|YP_001371204.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561877|gb|ABS15375.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 784

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 114/516 (22%), Positives = 213/516 (41%), Gaps = 50/516 (9%)

Query: 325 NRYLQFH-NRSFVELWEIDLAF--LATNPSNDELLEFLRSANKLP----------EQLNW 371
            R +     R    LW+ D+A   +  + S  E+L +      LP          E  + 
Sbjct: 257 QRRIDLALGRGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLPFGDVAAIINTEDGDL 316

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGGTIWMFENLTVQVDLET 427
            +  E   +   S           +G  + + V     S      + +  +++ Q     
Sbjct: 317 YSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVGIAFDVSEQHRFAQ 376

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +         E I+++SE   ++  + R+ ++N  F          L PG     + A  
Sbjct: 377 QTAEADMRIREAIENISEAFILWDSNNRLVMANSKFSEYAGLPVWTLKPGVPRNEVDAHT 436

Query: 488 SRY-YNESDGWDLFAAIITSFD-----------DERKSLQGTLELL-------------- 521
             + +      +   A   +F+           +ER++  G L  +              
Sbjct: 437 RPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGLVSIGTDITQLKLHQERL 496

Query: 522 --SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             S+  L  +I  L  A+       V +     R   ++ E    A+  K+ F+ ++S+E
Sbjct: 497 VDSERRLMATIHDLSIARK-GERDRVRELSELARKYGQEKERAEAANRAKSEFLANMSHE 555

Query: 580 LRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           LR+PL  IIGF+++++    G L + +  +Y+  I  S   LLN++NDILD++ ++AG  
Sbjct: 556 LRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHF 615

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+   I L  L+NE  + I+ +  E NI +    +  +    ADR+ + Q+   +LSNA
Sbjct: 616 SLDREQIDLCPLINETVRMISLQADEKNIAVNTRIEEAM-QLYADRRAIKQVLINLLSNA 674

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGL 756
           + F+S G  + ++A +       ++++ G  IP+   K +   F    +       G GL
Sbjct: 675 VKFTSYGGQITVRARKTGSALFMTIQDTGVGIPKSAIKKIGQPFEQVENQFTKTHTGSGL 734

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I  S   LHGG + I S++   T ++  IP ++
Sbjct: 735 GLAITRSLAELHGGWLRIRSTEGVGTVVSVCIPDRK 770


>gi|332707718|ref|ZP_08427745.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332353421|gb|EGJ32934.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 930

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 128/791 (16%), Positives = 287/791 (36%), Gaps = 69/791 (8%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET-------PEIIGQLHQR 102
           +L +      ++ + + + L +Y ++   +  L   W+ +           +++G     
Sbjct: 151 NLNRDQQNFKNYFALLTEWLYRYEAVSKISGQLLYEWNTQTNELIWGHNIEQVLGYYPGE 210

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL--VAETQNDCAIKIEGRVS 160
           +   +   D L     +      +     E++    +   L      ++   I +E +  
Sbjct: 211 LTNTRQGWDEL-----IYPDDLERYRHTIERVIVTKEPIHLEYRIRKKDGTYITVENK-- 263

Query: 161 GSCAFLR----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
               +L     +  + G+  ++ E     + L      F++  D+        D    + 
Sbjct: 264 -GQFYLDSSGNLNRVLGLIVDITERKQAEEALRLSEKRFRLAVDNFPGTFMIYDAQRRLQ 322

Query: 217 WANISYKKNTETEGIVFQKAIGES--RKLFKEEIKKRMISSSALEKNFCE--TVSTLEHG 272
           + N    K T            E     +FK+   K +  +        E  T++  E G
Sbjct: 323 FINQQGVKLTGVSDSPLLGHTDEEIYPPVFKDIYVKLLQKAVETRTPQVEELTLTLPEVG 382

Query: 273 NNKSYK-IVRVLNSFG----EAGIAIDVSKEITVNDQLTHTYE----------------- 310
                   + +LN  G      GI  D ++      +L   Y+                 
Sbjct: 383 ELTVLATYIPLLNEQGNIYQVIGIIQDTTQRKQAEVELRQAYQQLRLNTAAALDEKDAQF 442

Query: 311 --ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT----NPSNDELLEFLRSANK 364
             +     + +++ D +      NR+F E+ E   + L        ++ E LE  +   K
Sbjct: 443 GRVFDEAPIGMSLSDLDYQFIQVNRAFYEMLEYTKSELMALNGLAITHPEDLEKAKPYIK 502

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
              Q    ++K  I  + K+ +T    W   N   + +   +      + M E++T +  
Sbjct: 503 QVIQGEIDSFKLEIRYLKKNQDT---LW--GNLTMMAMRDQAGEILCILSMVEDITERKQ 557

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E       +     I+  +E +     DG +   N A+   +  + + L     +  + 
Sbjct: 558 AEEAVRHSEERFRAIIEDQTELICRLKLDGTLTFVNDAYCRYFGKDRSELVGQVFLPKMP 617

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV- 543
                    +         I +++       G +        ++S   + +         
Sbjct: 618 PEDEDIVTRNFRSLSVENPINTYEHRVLLDSGEI-----RWQQWSDRAMFDEHGHFIECQ 672

Query: 544 ----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T+  +AE  + +     ++  ++++ FV  VS+E R+PLT I     +L+  + 
Sbjct: 673 AVGRDITELKQAEADIRKALAKEKELGQLRSGFVSLVSHEFRTPLTTIQSSAQMLQRYEQ 732

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                K+ ++ + I  +   +  L++D+L +   DAG +K     + L  L  ++ ++I 
Sbjct: 733 KLSAEKKLKHHDKIQHAVLRMTQLLDDVLTIGKADAGKLKFEPEPMDLVALCQDILENIK 792

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             +   N  +  +S G     + D + L  + + +L NA+ +S +G T+  +   ++   
Sbjct: 793 INL-GFNHNLIFLSHGSCQDVLIDERLLSHVVNNLLLNAIKYSPEGGTIKFELNCNSSTA 851

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +  V++ G  IP+     +F  F   ++ G   G GLGL+IV+  ++LH G ++++S   
Sbjct: 852 VIQVQDQGIGIPKKDQYQLFESFERASNVGSIPGTGLGLAIVKKCLDLHEGTIAVNSEVG 911

Query: 780 GVTTINCRIPS 790
             TT    +P 
Sbjct: 912 VGTTFTVTLPL 922


>gi|158424746|ref|YP_001526038.1| PAS protein [Azorhizobium caulinodans ORS 571]
 gi|158331635|dbj|BAF89120.1| PAS protein [Azorhizobium caulinodans ORS 571]
          Length = 763

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 114/508 (22%), Positives = 209/508 (41%), Gaps = 51/508 (10%)

Query: 332 NRSFVELWEIDLAF--LATNPSNDELLEFLRSANKL----------PEQLNWKTWKENIF 379
           NR    +W+ D+A   +  + +  E+L   R    L          P+  N     + + 
Sbjct: 247 NRGRCGMWDWDMARGRMYWSDTMFEILGLERRDELLSFGEIAKLVHPDDGNLYELAQELA 306

Query: 380 SVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRGG--TIWMFENLTVQVDLETKYNTL 432
               +S           G  + +     +V      G   I +  ++T    L  +  T 
Sbjct: 307 ERPGASVDRVFRMRTARGDFVWLRMRAEVVQQAGEDGPHLIGIAMDVTEAQRLAERTVTA 366

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA------T 486
                + I+ +SE   ++    R+ L N  F++L +  ++ +  GT    IA       T
Sbjct: 367 DMRLRDAIESISEAFVLWDSQNRLVLCNSKFQTLHELPDDAIVAGTPFETIATVGRHPVT 426

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQTMLTFVN 544
            +    E    +   A      + R              +     I PL   +  L    
Sbjct: 427 RTPLKPEDKPEEGSRAFEAQLSNGRWLKIAERRTKDGGYVSVGTDITPLKRHEERLMDNE 486

Query: 545 VT------DSVRAERALTEKNEALRK--------------ADEIKNSFVQHVSYELRSPL 584
                   D  ++++ L  + + L +              A+  K+ F+ ++S+ELR+PL
Sbjct: 487 KRLMALVADLRKSQQTLEHQAQQLAELAEKYSEEKTRAEDANRAKSEFLANMSHELRTPL 546

Query: 585 TNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             IIGF++++++   G L + K  +Y   I  S T LL+++NDILD++ ++AG M+L   
Sbjct: 547 NAIIGFSEIMESGMFGPLGSDKYREYCSDIKGSGTYLLDVINDILDMSKIEAGRMQLELE 606

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            I L++++ +  +  A K  E  + +     G       DR+ L QI   +LSNA+ F+ 
Sbjct: 607 DIRLDEIIADAMRVTAVKGDEKQLDMTAQV-GAGQVMRGDRRALKQILLNLLSNAVKFTP 665

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
           +G  V ++A  + G  + ++++ G  IP      +   F           +G GLGL+I 
Sbjct: 666 EGGHVAVRAKVNGGAAVIAIEDTGIGIPRHALNKIGRPFEQVESQFTKTHKGSGLGLAIA 725

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +S   LHGG + I S++   TT+  R+P
Sbjct: 726 KSLAELHGGSMRIRSTEGAGTTVVVRLP 753



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 78/253 (30%), Gaps = 24/253 (9%)

Query: 206 VWHRD-QAGDILWANISY------KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
           +W  D   G + W++  +      +++         K +        E  ++      A 
Sbjct: 253 MWDWDMARGRMYWSDTMFEILGLERRDELLSFGEIAKLVHPDDGNLYELAQELAERPGAS 312

Query: 259 EKNFCETVSTLEH--GNNKSYKIVRVLNSFG--EAGIAIDVSKEITVNDQLT----HTYE 310
                   +            ++V+     G    GIA+DV++   + ++         +
Sbjct: 313 VDRVFRMRTARGDFVWLRMRAEVVQQAGEDGPHLIGIAMDVTEAQRLAERTVTADMRLRD 372

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            + +++ A  ++D    L   N  F  L E+    +      + +    R        L 
Sbjct: 373 AIESISEAFVLWDSQNRLVLCNSKFQTLHELPDDAIVAGTPFETIATVGRH-PVTRTPLK 431

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
            +   E     +++         L NG+ L +       GG + +  ++T     E +  
Sbjct: 432 PEDKPEEGSRAFEA--------QLSNGRWLKIAERRTKDGGYVSVGTDITPLKRHEERLM 483

Query: 431 TLVKVQGETIDHL 443
              K     +  L
Sbjct: 484 DNEKRLMALVADL 496


>gi|309780589|ref|ZP_07675335.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
 gi|308920639|gb|EFP66290.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
          Length = 1437

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 118/516 (22%), Positives = 200/516 (38%), Gaps = 38/516 (7%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             E T+  QL+    ++  +   +   D  +     N +F  ++    A L    +  EL 
Sbjct: 555  AEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASLLGR-TPQELG 613

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT----LHVIVTSNPRG-- 410
             +  S       +N +  +    S     E   DT   P+GQ+      +     P G  
Sbjct: 614  LYSVSNTSPLSDINQRAAQ---TSESTREELIIDT---PDGQSRNVLYWIEPFHLPDGQP 667

Query: 411  -GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-----DGRIKLSNPAFR 464
             GT+    +++   + + +   L +   E  + L   V  F        GRI        
Sbjct: 668  AGTVASLVDISEIREAQARAERLEQRLREVTESLPALVYQFELPPGQVQGRITYVAGKAY 727

Query: 465  SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
                 +   L        +           D   + A  +T  D + + +     +    
Sbjct: 728  ETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTVLVSAQQLTPLDQQFRHVSADGVV---R 784

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYEL 580
             L    IP   A     +      V AER    AL     A   A   K+ F+  +S+E+
Sbjct: 785  WLHARSIPHREADGRTVWNGYLSDVTAEREQADALEAAKNAAESALHAKDRFLAMMSHEI 844

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+P+  ++G  +LL+ +K   L  +Q Q V  +  S   LL++++DILD A V+AG + +
Sbjct: 845  RTPMNGVLGLVELLQQTK---LEGEQKQMVSLVQDSGRALLHILDDILDYAKVEAGRLDI 901

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
            + S   L ++ +     +A++ HE  + + V    ++  S   D  RL QI   +LSNA+
Sbjct: 902  SPSATDLREVFDGTVGLLASRAHEKALAMHVDVAAEVPASVSVDGIRLRQILFNLLSNAI 961

Query: 700  DFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
             F+  GS V L A       D      SV + G  I  ++  ++F  FV       RR  
Sbjct: 962  KFTDAGS-VRLSAKCTDVTDDTAHLAISVSDTGIGISPEVQATLFAPFVQAERSTTRRYG 1020

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+I      L GG + + S+    T +  R+
Sbjct: 1021 GTGLGLAISRQLAGLMGGELVMESAPGHGTAVTLRL 1056



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 83/295 (28%), Gaps = 37/295 (12%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E  +     + L+  +S  + L +++ F +  +D A   +  N ++           
Sbjct: 545 LRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASL 604

Query: 234 QKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIVR 281
                +   L+              ++   E    E +     G ++        + +  
Sbjct: 605 LGRTPQELGLYSVSNTSPLSDINQRAAQTSESTREELIIDTPDGQSRNVLYWIEPFHLPD 664

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIF-----DQNRYLQFHN 332
                G     +D+S+      +     + L     +L   +  F          + +  
Sbjct: 665 -GQPAGTVASLVDISEIREAQARAERLEQRLREVTESLPALVYQFELPPGQVQGRITYVA 723

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
               E   +    L    S  ELL       ++ + +        + S  + +   +   
Sbjct: 724 GKAYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTV--------LVSAQQLTPLDQQFR 775

Query: 393 HL-PNGQTLHVIVTSNP----RGGTIW--MFENLTVQVDLETKYNTLVKVQGETI 440
           H+  +G    +   S P     G T+W     ++T + +               +
Sbjct: 776 HVSADGVVRWLHARSIPHREADGRTVWNGYLSDVTAEREQADALEAAKNAAESAL 830



 Score = 41.5 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 87/306 (28%), Gaps = 35/306 (11%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
            L ++ ++       +  QLS   +L+       +  D       +          P+  
Sbjct: 544 QLRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRAS 603

Query: 110 -----TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI--------- 155
                   L   +         +++   +   E    +L+ +T +  +  +         
Sbjct: 604 LLGRTPQELGLYSVSNTSPLSDINQRAAQT-SESTREELIIDTPDGQSRNVLYWIEPFHL 662

Query: 156 -EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            +G+ +G+ A L  + +  I    A      ++L         L    +         G 
Sbjct: 663 PDGQPAGTVASL--VDISEIREAQARAERLEQRLREVTESLPALVYQFELPPGQV--QGR 718

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM-----ISSSALEKNFCETVSTL 269
           I +      +    +       +     L  E+ ++RM     +S+  L     +     
Sbjct: 719 ITYVAGKAYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTVLVSAQQLTPLDQQFRHVS 778

Query: 270 EHGNNKSYKIVRVLNSFGEA-----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
             G  +      + +   +      G   DV+ E    D L        +     A+  +
Sbjct: 779 ADGVVRWLHARSIPHREADGRTVWNGYLSDVTAEREQADALEAAKNAAES-----ALHAK 833

Query: 325 NRYLQF 330
           +R+L  
Sbjct: 834 DRFLAM 839


>gi|153870479|ref|ZP_01999873.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152073056|gb|EDN70128.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 660

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 92/393 (23%), Positives = 175/393 (44%), Gaps = 26/393 (6%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + + +++  +  +E +     +     ++  +  + +    G I+  NPAF        +
Sbjct: 252 VQLQQDIAKRKQVEEELRKFSR----AVEQSANTIIITDLKGDIQFVNPAFSRQTGYAYH 307

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +  G ++R + +           WD    +   +  E  +     EL  +     +I P
Sbjct: 308 EV-IGKNLRFLKSGKYPPAFYKKLWDTI-KLGRVWQGEVLNQHKNGELFWNFT---TISP 362

Query: 533 LPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           + +     T       ++T+  RAE  L +  E    A++ K +F+ ++S+ELR+PLT I
Sbjct: 363 IKDQNGQTTHYLAISRDITERKRAEAELFKSKELAESANQAKTAFLTNMSHELRTPLTAI 422

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  LLK  K   L  +Q + ++ I  S   LL L++DILDL+ ++AG ++L  S   L
Sbjct: 423 LGYAQLLKQDKR--LTDEQREGIQIIYRSGEHLLTLISDILDLSKIEAGKLELVPSDFHL 480

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             L  ++ +    +  +  I +      +L  +  ADR+RL QI   ++SNA+ F+  G 
Sbjct: 481 PTLFQDIVELFGIRFEQKGIELVYEPLSELPRAAHADRKRLRQILLNLVSNAIKFTETG- 539

Query: 707 TVILKAA-------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGL 758
            V LK         ++ G     V+++G  I     + +F  F    ++     G GLGL
Sbjct: 540 QVSLKVQYTPIPDNKNQGKMRVDVEDSGIGIAAAHLEKIFLPFQQVGNKMYYSEGTGLGL 599

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SI ++ + + GG + + S     +     IP +
Sbjct: 600 SITKTLVEMMGGQLQVKSRLGRGSHFWFEIPIQ 632



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 72/212 (33%), Gaps = 23/212 (10%)

Query: 245 KEEIKKRMISSSALEKNFCE-TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
             ++++ M      E+   +  +   E    ++ ++ ++     +     D++K   V +
Sbjct: 212 NGQLQQEMTERQKTEQELRKYRIQLEEKVAERTAELAQLNVQLQQ-----DIAKRKQVEE 266

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +L      +      I I D    +QF N +F           A +    + L FL+S  
Sbjct: 267 ELRKFSRAVEQSANTIIITDLKGDIQFVNPAFSRQTGY-----AYHEVIGKNLRFLKS-G 320

Query: 364 KLPEQLNWKTWKENIFSVYKSSE---THKDTWHLPNGQTLHVIVTSNPRGGT-IWMFENL 419
           K P     K W           E    HK+     N  T+  I   N +    + +  ++
Sbjct: 321 KYPPAFYKKLWDTIKLGRVWQGEVLNQHKNGELFWNFTTISPIKDQNGQTTHYLAISRDI 380

Query: 420 TVQVDLETKY-------NTLVKVQGETIDHLS 444
           T +   E +         +  + +   + ++S
Sbjct: 381 TERKRAEAELFKSKELAESANQAKTAFLTNMS 412


>gi|189348642|ref|YP_001941838.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189338780|dbj|BAG47848.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 767

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 103/502 (20%), Positives = 193/502 (38%), Gaps = 32/502 (6%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L+ L   +   D N  L + N +   L        A     D L    R   ++ 
Sbjct: 128 QFEALLNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRV- 186

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--------RGGTIWMFEN 418
                 +  E+     +++   +       G+ + V  T+ P         G  + +   
Sbjct: 187 ----QTSAVEHALGGTRTT-CERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLL--- 238

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
                  +       +V+   +D   + +     D RI   NPA + ++  +E       
Sbjct: 239 --RDASADRARADAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRR 296

Query: 479 HIRNIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSII 531
               IA    + +     +D    I+          D  R         +     +   +
Sbjct: 297 FDSLIAMRWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVAL 356

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +   +T         + R+ R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ 
Sbjct: 357 SITLRETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWI 416

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L+ S   +L   + Q ++ I  S+  L  +V DILD +++  G ++L+   + +  L 
Sbjct: 417 EVLRNSGDDAL---RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLF 473

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V  +  T      I ++  S         D +RL Q+ S ++SNA+ F+  G  V + 
Sbjct: 474 ADVVAAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVS 533

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            A D+   + +V + G  I  +    VF+ F          RRG+GLGLSIV   + LHG
Sbjct: 534 VAHDDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHG 593

Query: 770 GHVSISSSD-EGVTTINCRIPS 790
           G V + S+     TT   ++P+
Sbjct: 594 GTVVVDSAGRNRGTTFTVKLPA 615



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 48/162 (29%), Gaps = 12/162 (7%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT-ETEGIVFQKAIGESRKLFKEEIKKRMI 253
           F+ L ++L   V   D  G + + N +              +A+ +  +L   + ++   
Sbjct: 129 FEALLNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQT 188

Query: 254 SSSALEKNFCET---VSTLEHGNNKSYKIVRVLNSFGEAGIAID--------VSKEITVN 302
           S+         T      L     +   +        +A   +D         S +    
Sbjct: 189 SAVEHALGGTRTTCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 248

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           D       ++     A+   D++  +   N +   ++  D  
Sbjct: 249 DAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEE 290


>gi|153806751|ref|ZP_01959419.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
 gi|149131428|gb|EDM22634.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
          Length = 902

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 105/519 (20%), Positives = 212/519 (40%), Gaps = 45/519 (8%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV------------- 336
           G   +++      + +      ++N   +I    ++  + F NR F+             
Sbjct: 234 GYIQNITDIQRRRNDINTLTHAINNAKESIFAAREDGTIIFANRRFLHNHGICENVDICK 293

Query: 337 -ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            ++++I          N+   + +                 + F  +  S+ ++D     
Sbjct: 294 LKIYDIAADMPTQKAWNERCKDIMHGG-------------SSNFIAHHPSKINRDILAY- 339

Query: 396 NGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGP 452
            G   +V  T++    + W F  +++ ++  E +   L  +   TI++L  G+ V     
Sbjct: 340 EGTMYNV--TNDSGEESYWSFAHDISERIRYEAQIKRLNLIMDTTINNLPAGIVVKEINN 397

Query: 453 DGRIKLSNPAF--RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
           D R    N     R L   E    +   +   I A   R   + D           +  E
Sbjct: 398 DFRYLYRNRESYNRDLCVGESFGKNDFDYYPPIVADKKR---QEDIQVATTGKGLHWTTE 454

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +   G   +L    +      L +   +    ++T+    +R L    E    +D++K+
Sbjct: 455 GRDKNGNRIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKRELQSSKEKAEMSDKLKS 514

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+E+R+PL  I+GF+ L+  S   +   ++  Y   + +++  LL L+N+ILDL
Sbjct: 515 AFLANMSHEIRTPLNAIVGFSQLIAES---NDEEERKTYYGIVESNNGRLLELINEILDL 571

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +++GI++       L++L  EV  +   +M    + +      +      D+ R+ Q+
Sbjct: 572 SKIESGIIEFTIGPTSLHNLCREVHDAHIFRMPV-GVSLVHEPSDESLMIETDKNRVFQV 630

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            S ++ NA  F+ +GS +     R     +F V + G+ I  +    VF RF    +  Q
Sbjct: 631 ISNLIGNAAKFTKEGS-ISYGYKRVGDQIVFHVTDTGTGIEPEKVGRVFERFAKLNNHAQ 689

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGLSI +S +   GG ++++S     TT N  +P
Sbjct: 690 --GTGLGLSICKSIVERLGGKITVNSEFGVGTTFNFTLP 726



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 88/284 (30%), Gaps = 24/284 (8%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN---TETEGIVFQKAIGES 240
             ++  N I+      ++    ++   + G I++AN  +  N    E   I   K    +
Sbjct: 241 DIQRRRNDINTLTHAINNAKESIFAAREDGTIIFANRRFLHNHGICENVDICKLKIYDIA 300

Query: 241 RKLFKEEIKKRMIS--SSALEKNFCETVSTLEHG-----NNKSYKIVRVLNSFGEAGIAI 293
             +  ++               NF     +  +          Y +            A 
Sbjct: 301 ADMPTQKAWNERCKDIMHGGSSNFIAHHPSKINRDILAYEGTMYNVTNDSGEESYWSFAH 360

Query: 294 DVSKEITVNDQLTH----TYEILHNLTVAIAI--FDQNRYLQFHNRSF--VELWEIDLAF 345
           D+S+ I    Q+          ++NL   I +   + +    + NR     +L  +  +F
Sbjct: 361 DISERIRYEAQIKRLNLIMDTTINNLPAGIVVKEINNDFRYLYRNRESYNRDLC-VGESF 419

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                ++ +    + +  K  E +   T  + +    +  + + +   + + + + V   
Sbjct: 420 ---GKNDFDYYPPIVADKKRQEDIQVATTGKGLHWTTEGRDKNGN-RIILDKRKIRVDGD 475

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
                  + +  ++T    ++ +  +  +   E  D L      
Sbjct: 476 ELSSPIIVSIEWDITELEMIKRELQSSKEK-AEMSDKLKSAFLA 518


>gi|253569669|ref|ZP_04847078.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840050|gb|EES68132.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 635

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 171/378 (45%), Gaps = 19/378 (5%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           N+T Q + E     L +   + I+ L E + +F  +  I                     
Sbjct: 137 NVTSQCEKEQHIKHLEEHNRKIIEALPEFIFIFDENFFITDV---------LMAPGTILL 187

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL-LSDSVLEYSIIPLP 534
             +  +     R     +  DLF   I     D   K ++  LE+  S    +  I P  
Sbjct: 188 HPVEVLKGADGRSIYSPEVSDLFLCNIRECLKDGNLKEIEYPLEVEGSKHYFQARIAPFE 247

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++ D +R    L E       AD +K+ F+ ++S+E+R+PL  I+GF++++
Sbjct: 248 GNTVLALIHDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFSEIM 307

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L     ++ +Y+E I  +S +LL L+NDILDL+ +++G  ++++  + +  L++EV
Sbjct: 308 ---VLTENEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEV 364

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++    KM + N+ +KV+          DR R++Q+    LSNA+  +  GS + L   +
Sbjct: 365 EKVHQLKM-KLNVDLKVVRPQGEFWTSTDRNRVMQVLFNFLSNAIKNTETGS-ITLGLKQ 422

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       V + G  IPE+    +F RF       Q  G GLGLSI +S +   GG + +
Sbjct: 423 EGDWLKLFVSDTGCGIPEEKLPQIFTRFEKLNDFVQ--GTGLGLSICKSIVERLGGRIEV 480

Query: 775 SSSDEGVTTINCRIPSKE 792
           SS     +T    +P +E
Sbjct: 481 SSELGQGSTFALYLPYQE 498


>gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56']
          Length = 961

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 123/739 (16%), Positives = 253/739 (34%), Gaps = 80/739 (10%)

Query: 119 LKFHHYIKLSKATEKLRKEGQ--SFDLVAETQND--CAIKIEGRVSGS------CAFLRI 168
           L       L+     L  + +  +F++    ++    ++ + G            A + +
Sbjct: 57  LPEDRAGSLAAWRSLLEADEEELTFEMACRCKDGGVRSLHVTGVFVRDVRQRPYRAVVFV 116

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDS--LDFLVWHRDQAGDILWANISYKKNT 226
             +    +         + L+   +  + +F S       W  D  G I+ AN +Y K  
Sbjct: 117 EDITEPRNAEERALAAEQALAESEAKLRNIFHSNMAPMAFWTHD--GRIIEANDAYLKLV 174

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC------ETVSTLEHGNNKSYKIV 280
                     +         E +     + A  +         E    L  G      + 
Sbjct: 175 GHTREEVAAGLVRWDADMSPEDRAAGDRALAELRASRWTFTPFERTYVLRDGTRIKMLVS 234

Query: 281 RVLNSFG---EAGIAI--DVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFH 331
             L       EAG AI  D++        +    ++      ++   + + D      + 
Sbjct: 235 GCLLPGERYEEAGFAIVLDMTALRQTEAAVQRCEQVFRAIGESIDYGLWVSDPAGQNIYS 294

Query: 332 NRSFVELWEIDLA------FLATNPSNDE-----LLEFLRSANKLPEQLNWKTWKENIFS 380
           + +F+++  I         ++ T   +D        E +R      E+L + +    +  
Sbjct: 295 SHAFLQMAGIKQEQCSGHGWIETLHPDDRHKVAIFEECVRRGEPFEEELRYVSPDGVVHP 354

Query: 381 VYKSSETHKDTW---------HLPNGQTLHVIVTSNPRGGTIWMFEN-----LTVQVDLE 426
           V       +D            L   +            G +    +     +  +  LE
Sbjct: 355 VLNRGVPVRDERGEITAWVGICLDVSRLKRTEDALRESEGRLRAALDEAQRVIAERGRLE 414

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +     +     + +  + +     D R    +P   ++           T   N   T
Sbjct: 415 DELRARERELASLMANSPDVIYRLDLDLRCTFMSPTSWTVMGFPPEHYIGRTPRENGLPT 474

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNV 545
                +E+    +    + +   +R         L        IIP L     + +F+ +
Sbjct: 475 EVIEVSEA----VCHEALATARPQRMEFS-----LGGRRFRARIIPELGPEGAVDSFMGI 525

Query: 546 TDSVRAERALTEKNEALRKADEI-----------KNSFVQHVSYELRSPLTNIIGFTDLL 594
           T+ V AER   E+ + L +++             K+ FV  +S+ELRSP+  I+G+  +L
Sbjct: 526 TEDVTAERLAEEERQKLLESERAARDEAERVSRVKDDFVATLSHELRSPINAILGWARIL 585

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +           ++ +E I  ++ +  ++V+++LD++ + +G ++L+   + L  ++   
Sbjct: 586 RGRA--PEPPTLARGLEVIERNARLQADMVSELLDMSRIVSGKLRLDVQPVDLPSVIRSA 643

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            ++I        I +    D +  S   D  R+ Q+   +LSNA+ F+  G  + +   R
Sbjct: 644 LEAIQLAAETKGIAVASSIDPEASSLRGDPARIHQVVWNLLSNAVKFTPPGGRIDVALRR 703

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                  SV + G  I       +F RF        R   G+G+GLSIV+  + LHGG V
Sbjct: 704 AGAHAALSVTDTGMGIAPQFLPHLFERFRQADASSTRKHGGLGIGLSIVKHLVELHGGTV 763

Query: 773 SISSSDEG-VTTINCRIPS 790
            ++S  E    T    +P 
Sbjct: 764 EVASQGEHLGATFTVTLPL 782


>gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
 gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
          Length = 1692

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 106/539 (19%), Positives = 206/539 (38%), Gaps = 49/539 (9%)

Query: 278  KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR-----YLQFHN 332
            +I  ++ S    G A+    +    +++      + N   AI I   +       + + N
Sbjct: 806  EISILVASASTIGEAV---AKKDSIERMRLLESAVVNSNDAIVIAAPDPSDGMPKIIYVN 862

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
             +F  +            + +E+L       + PE    ++    I    ++++      
Sbjct: 863  SAFTRMTGY---------AREEVLGRYPDFLEGPETD--RSKIMEILEAVRNAQPVNQEL 911

Query: 393  --HLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
              +  +G    V +   P           + +  + T +   E +      +     + +
Sbjct: 912  VNYRKDGSRFWVELNIFPVRDHMGEVTHWVSIQRDTTERRVAEDRLRWSELLMRSMTESI 971

Query: 444  SEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFA 501
              G  V     G+    N  F  L   E+          + +A  SR  +   D  D   
Sbjct: 972  PFGFYVLNRATGKSLYLNHRFCELLGVEDLEEDLRCGRLDGSALFSRIGSMHPDAGDSLR 1031

Query: 502  AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALT 556
             I    D+     +  +      V++     + +        +  F +VT  ++A   L 
Sbjct: 1032 EIYNRTDE----AEIEIRTADGRVIKVFATDIRDKSGKYFGRLGIFEDVTKDIKAAEELR 1087

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +  EA  +A   K  F+ ++S+E+R+PL  IIG + LL  +   ++  +Q  YV  I +S
Sbjct: 1088 KAKEAAEEAARSKAEFLANMSHEIRTPLNAIIGMSGLLLRT---NVTPEQRSYVSAIQSS 1144

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL ++ DILDL+ ++ G ++L+ ST  + + +      ++ K  E  I +  + D  
Sbjct: 1145 GNALLEMLADILDLSRIEEGKLELDSSTFSILECVETCIDILSVKASEKQIELAYLIDED 1204

Query: 677  LGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIP 731
            +   V  D  RL Q+   +L NA+ F+ +G      +      D  +  F V++ G  IP
Sbjct: 1205 VPELVLGDATRLRQVLVNLLENAIKFTERGEVFLRVICQYMDEDLSELHFFVRDTGIGIP 1264

Query: 732  EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F+ F        RR  G GLGL+I +  + + GG +   S     +T +  I
Sbjct: 1265 PEKMDRLFHTFSQVDSSITRRYGGTGLGLAISKHLVEMMGGRIWAESIPGAGSTFHFTI 1323



 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 92/268 (34%), Gaps = 26/268 (9%)

Query: 276 SYKIVRVLNSFGEAGIAIDVS-KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
             +I  ++      G AI  S  E  +        E++ +    I   D+   ++F N  
Sbjct: 361 WNEISILMLGVASIGGAIARSVAEECLRRSEERYRELVESANSIILRLDRRGNVRFINEF 420

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHK---D 390
             + +           S  E+L        +PE +   +  +  I  + K+ E ++   +
Sbjct: 421 AQQFFGY---------SESEILGKCVMGTLVPEVESTGRDLRGMIAEILKAPEDYRTNVN 471

Query: 391 TWHLPNGQTLHV------IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                +G+ + +      + + +     + +  ++T     + +  ++ +   E I+ L 
Sbjct: 472 ENMKKSGERVWIAWTNKTVSSESGEMEILCVGNDITELRRAKERLESMNQWLLEIIEFLP 531

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +   V   DGR+   N A   +   +++ +                        +   ++
Sbjct: 532 DATLVVDADGRVMAWNRAMEEMTGIQKSEMLGKGDFAYALPF------HGCRRPMLIDLV 585

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIP 532
             +D+   SL   LE   D++  Y  +P
Sbjct: 586 MRYDEHIASLYENLERRGDTLYAYVYVP 613


>gi|237723244|ref|ZP_04553725.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447766|gb|EEO53557.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 621

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 117/541 (21%), Positives = 217/541 (40%), Gaps = 44/541 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+GN K Y I         A      S    + +     + I  NL V I ++D++  
Sbjct: 104 TDENGNTKVYGIAETQEGIHIA------SAHQALQNSERILHNIYKNLPVGIELYDKDGQ 157

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSSE 386
           +        +L + D+     +   D L   +     LPE++  K    EN    ++   
Sbjct: 158 MV-------DLNKKDMEMFRISNKEDILGVNIFENPILPEEIKQKIKDNENADFTFRYDF 210

Query: 387 THKDTWHLPNGQTLHVIVT---------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +  + ++ PN  T  + +T         ++     + +  + T       K         
Sbjct: 211 SKINKYYQPNSTTGFIDLTTKVTTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFESFFD 270

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD-- 495
              D+   G A F       LS   +             GT +  I    S ++ E    
Sbjct: 271 LVGDYAKVGYAHFDA-----LSRDGYALRSWYRNVGEEEGTPLPEIIGIHSHFHPEDRAV 325

Query: 496 GWDLFAAIIT------SFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDS 548
             D    +I       S D   +   G       +VL  +     N  + +    ++T+ 
Sbjct: 326 MIDFLDKVIKGESSKLSRDVRIRRADGNYTWTRVNVLVRNYQLQDNIIEMLCINFDITEL 385

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+      +      ++  
Sbjct: 386 KETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSS---LLEEAEDAEEKHL 442

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ QS+  +  E  + 
Sbjct: 443 YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRATE-QVE 501

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I +  +    +F +D+ RL Q+    ++NA+ F+S+GS +++    +  +  FSV++ G 
Sbjct: 502 ILLAPELPELTFTSDKNRLYQVLLNFVTNALKFTSEGS-IVIDYRINGNEVRFSVQDTGM 560

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  +  +++F RFV   +     G GLGL I +S +   GG + + S     +      
Sbjct: 561 GIEPEKQEAIFTRFVKLNNFIA--GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTH 618

Query: 789 P 789
           P
Sbjct: 619 P 619


>gi|52081411|ref|YP_080202.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52786787|ref|YP_092616.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|319647319|ref|ZP_08001541.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52004622|gb|AAU24564.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52349289|gb|AAU41923.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|317390666|gb|EFV71471.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 581

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 145/367 (39%), Gaps = 21/367 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D+              I+++  G+ +    G I L N A++  +  E ++L    +   +
Sbjct: 229 DMTRAQEMQRDRLQTVIENIDSGLILIDGKGYIHLVNRAYQKQFHVEADQLLYHFY-HEV 287

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                      + +   A +   F    K        +     E   +P+         +
Sbjct: 288 LEHEEIINLIEEIFMTEAKVRKMFKLPIK--------IERRYFEVDGVPIIGINDEWKGI 339

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +      ER          + +E++  FV +VS+EL++P+T+I GFT+ L    + +  
Sbjct: 340 VLVFHDMTERK---------QLEEMRKDFVANVSHELKTPITSIKGFTETLLDGAM-NER 389

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               Q++  I   S+ L  L+ D+LDL+ ++     LN     + ++L E++  +  K  
Sbjct: 390 ETLLQFLSIILKESSRLQTLIQDLLDLSKIEQQNFTLNIQNCNIGEILAEIEMLLKNKAE 449

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I + +    K      D  RL QIF  +++NA+ ++ +  +V + A          V
Sbjct: 450 EKGITLTLEKPDKPAVASGDPHRLKQIFLNLVNNALTYTPEDGSVTISADVLEDAVQVKV 509

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +     +F RF            G GLGL+IV+  +  H G + + S     
Sbjct: 510 RDTGIGIKQSEIPRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHQGEIDVESERGKG 569

Query: 782 TTINCRI 788
           T    R+
Sbjct: 570 TEFTVRL 576



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
           +++     + S     +A ++       + Q      ++ N+   + + D   Y+   NR
Sbjct: 207 RTFNEDETMLSQSINMLAQNLQDMTRAQEMQRDRLQTVIENIDSGLILIDGKGYIHLVNR 266

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           ++ + + ++   L  +    E+LE     N + E       +  +  ++K     +  + 
Sbjct: 267 AYQKQFHVEADQLLYH-FYHEVLEHEEIINLIEEIF---MTEAKVRKMFKLPIKIERRYF 322

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             +G  + +I  ++   G + +F ++T +  LE 
Sbjct: 323 EVDG--VPIIGINDEWKGIVLVFHDMTERKQLEE 354


>gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1310

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 92/407 (22%), Positives = 177/407 (43%), Gaps = 34/407 (8%)

Query: 412 TIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF------- 463
            + +   ++ +V  +   +    +      +   + V +   + +I   N A        
Sbjct: 372 LLLLAWAISRKVTRQLSGFIESEERFRSMFEITPDPVWIL-MNQKIVECNNAAINTLHYP 430

Query: 464 --RSLWKTEENRLSPGTHIRNIAATCSRYYNESD----GWDLFAAIITSFDDERKSLQGT 517
              +L   E   +SP      + ++ S   +       G      +   +D E      T
Sbjct: 431 AKEALLGLEMCDISPEKQTTGMLSSSSLNSHFEQVTLSGNTRTEWVFQRYDGEPIYADMT 490

Query: 518 LELLSDSVLEYSIIPLPN-------AQTMLTFVNVTDSVRAER--ALTEKNEALRKADEI 568
           +  ++ +    +II   +        Q++  +    +   A +   L    EA   A++ 
Sbjct: 491 ILSIAFNNHPATIISWRDVTERVMSQQSLAQYKEKLEHDIALQTTELQTAKEAAENANQA 550

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+ +IIG + L   +    LN KQ  Y+E +S S+  LLN++NDIL
Sbjct: 551 KSEFLANMSHEIRTPMNSIIGMSSLALQT---PLNDKQRGYIEKVSHSAESLLNIINDIL 607

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + ++A  M +     +L  L+++V   +  K+ E  + + +  D ++    V D  RL
Sbjct: 608 DFSKIEARKMDIENVPFMLPSLIHKVAHVLELKIEEKGLELIIDIDAEVPQQVVGDPTRL 667

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI   + +NA+ F+ +G  +I  A     +D+    FSV++ G  I +D   ++F  F 
Sbjct: 668 RQILLNLGNNAVKFTQQGEIIIRAAHSKNNQDDNIIHFSVQDTGIGISKDKQNNLFQSFS 727

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  RR  G GLGL+I +  I L GG + + S +   +T +  I
Sbjct: 728 QADTSTTRRFGGTGLGLAISKRLIQLMGGDIWVESEENKGSTFHFTI 774


>gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 865

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 136/707 (19%), Positives = 270/707 (38%), Gaps = 68/707 (9%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
           ++L +  E L+ +         T N   + IE            ++L  +  E+++    
Sbjct: 37  VELERRIEDLQAK-------LRTPNIANVDIERHPE-------PVTLQRLQQEISQRQQV 82

Query: 185 CKKLSNHISVFKVLFDSLDF-----------LVWHRDQAGDILWANISYKKNTETEGIVF 233
              L+     +++  D+ +            +VW  +          S+    ET     
Sbjct: 83  DAALTESEERWRLALDAANLGFWDWNVLTEKVVWSENHELLFGLVPGSFDGAYETFLCCV 142

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKSYKIVRVLNSFGE 288
                E R+   + I   + + +     F      +++  +       Y           
Sbjct: 143 HP---EDRESVMQVISACLNNKTDYYDEFRIVWPEKSIHWIAAKGRFFYN--EQGQPVRM 197

Query: 289 AGIAIDVSKEITVNDQLTHTYEILH---NLTVAIAIFDQNRYLQFHNRS--FVELWEIDL 343
            G+ +D+++     +        +    N+  AI     +  +   NR+  +  +     
Sbjct: 198 IGVCMDITESKRSEENTRQLATQVQEQANILNAILATSVDH-IYILNRTGHYQYVSYGGA 256

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHLPNGQTL- 400
           A L  +P   +++        LP++L  K       +V K  E  KD   +   +G+   
Sbjct: 257 AVLGLHP--QQMIGKTVQEIDLPQELIDKM-NGQFLTVMKVGEPIKDECEYVAEDGKHYY 313

Query: 401 HVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
             I+T      +   G I +  ++T     E              +    GVA +  DG 
Sbjct: 314 EYILTPLRNVNHSIEGVITVSRDMTEHKRAEQSIRNSEARFRRLFESNLIGVAFWNVDGF 373

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           I  +N A+  +             I  R +      + +     ++ A  I+    E++ 
Sbjct: 374 ITDANDAYLQIVGYTREEFDTLGKINWRELTPPDCEHLDTRAIAEVKANGISRIY-EKQY 432

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-------ALTEKNEALRKAD 566
           +Q     +S  VL  +++   + Q +   +++++   AE+       A     +    A+
Sbjct: 433 IQRNGRRVS-IVLGIALLDDSDEQGVAFVLDISERKLAEQQRDRLLCAERIARKDAEIAN 491

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            IK+ F+  +S+ELR+PL  I+G++ LL++ +  +  + ++  +E I  ++T+   L+ D
Sbjct: 492 RIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDRA--LETIERNATLQTQLIED 549

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ +  G + LN   + L  ++     ++        I+I+ + D +LG  + D  R
Sbjct: 550 LLDVSRILQGKLSLNVCPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPELGQVMGDANR 609

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   +LSNA+ F+S G TV +     N      V + G  I  +    VF+ F    
Sbjct: 610 LQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQIQVIDTGKGITPEFLPYVFDYFRQAD 669

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
               R   G+GLGL+IV   + LHGG V  +S  EG   T    +P 
Sbjct: 670 GTTTRKFGGLGLGLAIVRQVVELHGGTVQATSPGEGLGATFTVNLPL 716


>gi|134291128|ref|YP_001114897.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134317|gb|ABO58642.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 766

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 100/492 (20%), Positives = 186/492 (37%), Gaps = 19/492 (3%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ-L 369
           IL  L   +   D    + + N +  EL           P  D +  F R    +P   L
Sbjct: 132 ILDALPHGVIAADTQGRVTYLNAAAAELTGCSSDAALQEPVRDVVRLFDRDERLVPTTAL 191

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETK 428
           +      +  S     +   D+  +P  +    +V ++    G + +  +   Q      
Sbjct: 192 DRALAGVSAQSDQHWLQRRGDSAPVPIAEIARPLVDAHGNIDGAVLVLRDALAQRAAAET 251

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                ++Q   +D   + +      GRI   N A + ++  +E           +A    
Sbjct: 252 ----SRLQLAVVDASPDAIVGIDAQGRIVSWNGAAQRIFGYDEAHAHGRALDTLVAQRWL 307

Query: 489 RYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           R Y  +  ++     I          D  R     +   +         + L   +T + 
Sbjct: 308 RRYPLTVSFETLREPIGPLEVLCVRRDGRRFRASVSACPVRGDARNCVALSLTLRETRVQ 367

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                 + R+ +      E    ++ +K+  +  VS+ELR+PL  I G+ ++L+++   +
Sbjct: 368 RRRDLRTQRSLQGARTARERADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSASDDA 427

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L   Q Q ++ I  S+  L  +V DILD +++  G ++L+   + +  L  +   +  T 
Sbjct: 428 L---QQQAIDAIDRSAHSLTRMVGDILDASSLATGKLRLDAMPVDVVRLFADATSAFQTA 484

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                I ++            D +RL Q+ S ++SNA+ F+  G  V +    D    + 
Sbjct: 485 ASAAGIALEFDCTASACVVSGDAERLRQMLSNLVSNALKFTPAGGAVTVTLTHDAAHAVL 544

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD- 778
           +V + G  I  +    VF+ F          RRG+GLGLSIV     LHGG V + S+  
Sbjct: 545 AVGDTGQGIASEFIPYVFDMFRRADGSPASPRRGLGLGLSIVRHIAELHGGEVRVDSAGR 604

Query: 779 EGVTTINCRIPS 790
               T    +P+
Sbjct: 605 NRGATFTVTLPA 616



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 80/256 (31%), Gaps = 23/256 (8%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNT-ETEGIVFQKAIGESRKLFKEEIK----KRM 252
           + D+L   V   D  G + + N +  + T  +     Q+ + +  +LF  + +      +
Sbjct: 132 ILDALPHGVIAADTQGRVTYLNAAAAELTGCSSDAALQEPVRDVVRLFDRDERLVPTTAL 191

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQ 304
             + A      +       G++    I  +            G   +  D   +    + 
Sbjct: 192 DRALAGVSAQSDQHWLQRRGDSAPVPIAEIARPLVDAHGNIDGAVLVLRDALAQRAAAET 251

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 ++     AI   D    +   N +   ++  D A       +  + +  R   +
Sbjct: 252 SRLQLAVVDASPDAIVGIDAQGRIVSWNGAAQRIFGYDEAHAHGRALDTLVAQ--RWLRR 309

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
            P  ++++T +E I          +      +G+     V++ P  G       L++ + 
Sbjct: 310 YPLTVSFETLREPI-------GPLEVLCVRRDGRRFRASVSACPVRGDARNCVALSLTLR 362

Query: 425 LET-KYNTLVKVQGET 439
               +    ++ Q   
Sbjct: 363 ETRVQRRRDLRTQRSL 378


>gi|126656724|ref|ZP_01727938.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126621944|gb|EAZ92652.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 1302

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 124/741 (16%), Positives = 250/741 (33%), Gaps = 90/741 (12%)

Query: 107  QTDTDLLSFENWLKFHHYIKLSKA---TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGS- 162
            Q +   L F  WL   H      A     K  ++ +SF L    ++       G+   + 
Sbjct: 450  QREATALGFG-WLDAVHPEDSEAARGIFLKANEKHESFRLEYRLRHH-----SGQYHWAI 503

Query: 163  -CAFLRILSLD------GIYSELAETTLKCKKLSNHISVFKVLFDSL------------- 202
              A              G   ++++     + L +    ++ LF+S+             
Sbjct: 504  DAAHPWFGENGKFKGYIGAVIDISDRKQAEEALRHSEERYRTLFESMSEGFCVIKMLFDP 563

Query: 203  -DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
             +  +         L  N ++++ T     V + A      L     +     +   E  
Sbjct: 564  DNQPI-----DYCFLETNPAFEQQTGLSQAVGKTARQLLPDLEPHWFETYGKVALTGESI 618

Query: 262  FCETVSTLEHGNNKSYKIVRV----LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
              E  S +     + + +             A +  ++S+      +L       H L  
Sbjct: 619  RFEHGSDVMA---RWFDVSAFRIGLPEEGKVAILFEEISERKQTERKLQENALRFHTLAD 675

Query: 318  AIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
             I+ F    ++  ++ ++N+ + +    +L  +                 K+    + K 
Sbjct: 676  NISQFAWMANEQGWIFWYNQRWFDYTGTNLEEMQGW-----------GWQKVHHPDHVKR 724

Query: 374  WKENIFSVYKSSETHKDTWHLPN--GQTLHVIVTSNP----RGGTIWMF---ENLTVQVD 424
              E I   + + E  +D + L +  G+    +  + P    +G  +  F    ++T   +
Sbjct: 725  VTEKINQCFATGEIWEDMFPLRSKTGEYRWFLSRAIPIRDEQGKVLRWFGTNTDITELRE 784

Query: 425  LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
             E       +      + + + V     +G +   N  +         +         + 
Sbjct: 785  AENALRQSEERYRCLTESIPQLVWTANREGELLDVNQRWIEFTGLSLEQARADGWEAVVH 844

Query: 485  ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                    E     +        +   + + GT          +  IP  N    +    
Sbjct: 845  PEDLPVLREQWTEAVQRGTPYQAEGRMRRMDGTY-----RWFLHQAIPQGNEPGKMIKWY 899

Query: 545  VT------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             T            +  R         E   +A+ IK+ F+  +S+ELRSPL  I+G++ 
Sbjct: 900  GTATDIDVQKQLELERDRLLAQEQAAREVAERANRIKDEFLAVLSHELRSPLNPILGWSQ 959

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL+  KL    ++ ++ +  I  ++ +   L++D+LD+A +  G + L  +++ L   + 
Sbjct: 960  LLQVRKLD--EAQTAEALHTIERNAKLQTQLIDDLLDVAKILQGKLSLTMTSVNLAKTIE 1017

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
               +++       +I ++      +G    D  RL QI   +LSN + F+  G  V +  
Sbjct: 1018 AAIETVKQTAKSKSIALESQL-PNIGQVSGDEARLQQIVWNLLSNGIKFTPSGGQVKIHL 1076

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
             R        VK+ G  I  D    +F  F        R   G+GLGL+IV   +  HGG
Sbjct: 1077 KRVGSYAEILVKDTGKGISPDFLPHIFESFRQEDASITRKFGGLGLGLAIVSQLVEAHGG 1136

Query: 771  HVSISSSDEG-VTTINCRIPS 790
             +   S  EG   T   ++P 
Sbjct: 1137 TIRAESPGEGLGATFTVQLPL 1157



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 67/510 (13%), Positives = 162/510 (31%), Gaps = 83/510 (16%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI--------LS 170
           +      K+ +A ++     + +++         IK +G +  +    R+        + 
Sbjct: 338 IHPEDLPKVEQALQRALYNREEYNIEF-----RFIKPDGSLRWALGLGRVFYDDEGNPIM 392

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKN 225
           + G+  +++        L    +  + + D+   ++W  D  G   + N  +     ++ 
Sbjct: 393 MTGVDMDISHRKQIETALRASETKLRGMTDNAPVMIWVTDSTGSCTYLNQRWYDFTGQRE 452

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
               G  +  A+         E  + +   +  +         L H + + +  +   + 
Sbjct: 453 ATALGFGWLDAVHPE----DSEAARGIFLKANEKHESFRLEYRLRHHSGQYHWAIDAAHP 508

Query: 286 F--------GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI----FDQNRY-L 328
           +        G  G  ID+S      + L H+ E    +  +++    +    FD +   +
Sbjct: 509 WFGENGKFKGYIGAVIDISDRKQAEEALRHSEERYRTLFESMSEGFCVIKMLFDPDNQPI 568

Query: 329 QFH----NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
            +     N +F +   +  A      +  +LL  L              W E    V  +
Sbjct: 569 DYCFLETNPAFEQQTGLSQA---VGKTARQLLPDLE-----------PHWFETYGKVALT 614

Query: 385 SETHKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            E+ +   H  +       V++        G    +FE ++ +   E K           
Sbjct: 615 GESIRFE-HGSDVMARWFDVSAFRIGLPEEGKVAILFEEISERKQTERKLQENALRFHTL 673

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAF--------RSLWKTEENRLSPGTHIRNIAATCSRYY 491
            D++S+   +    G I   N  +          +      ++    H++ +    ++ +
Sbjct: 674 ADNISQFAWMANEQGWIFWYNQRWFDYTGTNLEEMQGWGWQKVHHPDHVKRVTEKINQCF 733

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSV 549
              + W+    + +   + R  L   + +  +   VL +            T  ++T+  
Sbjct: 734 ATGEIWEDMFPLRSKTGEYRWFLSRAIPIRDEQGKVLRW----------FGTNTDITELR 783

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYE 579
            AE AL +  E  R   E     V   + E
Sbjct: 784 EAENALRQSEERYRCLTESIPQLVWTANRE 813



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/435 (12%), Positives = 120/435 (27%), Gaps = 46/435 (10%)

Query: 177 ELAETTLKCKKLSNHISV-FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           E AE   + ++         + + D        RD  G I+   I Y      +     K
Sbjct: 124 ENAELKQELQRSQETFRTSVENMLDCFGIFSAMRDDLGKIVDFRIDYLNEAACQNNQMPK 183

Query: 236 AIGESRKLF-------KEEIKKRMISSSALEKNFCETVSTLEH--GNNK---SYKIVRVL 283
           A+   R L        +  +           K   +     +   G+ +   ++ I    
Sbjct: 184 AMQIGRGLCEILPAHRQSGLFDEYCRVVETGKPLIKDSLIYDDTYGDRRLIRAFDIRASK 243

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNL-TVAIAIFDQNRYLQFHNRSFVEL---- 338
            + G      DV+    +  +L  T   ++      +A+      L    ++   +    
Sbjct: 244 LNDGFVASWRDVTAHRQLELELNQTITHINQHQQTTLALQQSQERLNLAMKA-ASMGSWD 302

Query: 339 WEIDLAFLATNPSNDELLEF--------LRSANKLPEQLNWKTWKENIFSVYKSSETH-- 388
           W I    +  + + + L             +   +    +    ++ +     + E +  
Sbjct: 303 WNIQTGEVNWSSNLENLFGMSPGSFDGTYETVRAMIHPEDLPKVEQALQRALYNREEYNI 362

Query: 389 KDTWHLPNGQTLHVIVTSN----PRGGTIWM---FENLTVQVDLETKYNTLVKVQGETID 441
           +  +  P+G     +          G  I M     +++ +  +ET             D
Sbjct: 363 EFRFIKPDGSLRWALGLGRVFYDDEGNPIMMTGVDMDISHRKQIETALRASETKLRGMTD 422

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEE-----NRLSPGTHIRNIAATCSRYYNESDG 496
           +    + V    G     N  +       E            H  +  A    +   ++ 
Sbjct: 423 NAPVMIWVTDSTGSCTYLNQRWYDFTGQREATALGFGWLDAVHPEDSEAARGIFLKANEK 482

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            + F       +   +   G      D+   +          +   ++++D  +AE AL 
Sbjct: 483 HESF-----RLEYRLRHHSGQYHWAIDAAHPWFGENGKFKGYIGAVIDISDRKQAEEALR 537

Query: 557 EKNEALRKADEIKNS 571
              E  R   E  + 
Sbjct: 538 HSEERYRTLFESMSE 552


>gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 453

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 157/386 (40%), Gaps = 27/386 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             W    +  ++       T  + +    ++ +++GV      G++ L NP    ++K +
Sbjct: 90  LAWSINYMARELRKNLIVITEERNRARAILNSMADGVIALDKYGQVILINPVVEEIFKIK 149

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEY 528
           E        I+ I              +L    I +    +  +   L++L+    +   
Sbjct: 150 ETNWLGNKIIKVI-----------RNHELEELFIRALHSMQPVMNSELQVLTPQPRLFNI 198

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + PL         V    +   ER          K + ++  FV +VS+ELR+PLT+I 
Sbjct: 199 HVTPLKGNNDEKIGVVGLITDVTERR---------KLERMRTEFVANVSHELRTPLTSIN 249

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF + L    +         ++E ISA    L N+++D+L L+ ++    KLN   + L 
Sbjct: 250 GFVETLLDGAIEE-PIIARNFLEIISAEGKRLANIIDDLLKLSRLEDRRTKLNKQPVDLA 308

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++         +  E NI+I      KL     D+  L Q+   ++ NA+ ++  G TV
Sbjct: 309 EVIGNTITMFEGRALEKNIQITTEISPKLPLVPGDQGFLSQVMINLVDNAIKYTLTGGTV 368

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            +    +  +   +V + G  IP +    VF RF         +  G GLGLSI +  + 
Sbjct: 369 HISVKFNEHEVTVTVSDTGIGIPIESIPRVFERFYRVDKARSREMGGTGLGLSICKHIME 428

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            HGG + + S D   +  +  +P KE
Sbjct: 429 AHGGKIRVES-DSSGSQFSFSLPLKE 453



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 18/133 (13%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATN----PSNDEL 355
           + ++      IL+++   +   D+   +   N    E+++I +  +L         N EL
Sbjct: 108 ITEERNRARAILNSMADGVIALDKYGQVILINPVVEEIFKIKETNWLGNKIIKVIRNHEL 167

Query: 356 LE-FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            E F+R+ + +   +N         S  +          L N     +   ++ + G + 
Sbjct: 168 EELFIRALHSMQPVMN---------SELQVLTPQP---RLFNIHVTPLKGNNDEKIGVVG 215

Query: 415 MFENLTVQVDLET 427
           +  ++T +  LE 
Sbjct: 216 LITDVTERRKLER 228


>gi|332701531|ref|ZP_08421619.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551680|gb|EGJ48724.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 840

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 241/690 (34%), Gaps = 74/690 (10%)

Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK--CKKLSNHISVFKVLFDSLDF-LV 206
           D  I+  GR        R+   +   SE          +   + + + +V+ + +   L 
Sbjct: 13  DRLIEDLGR--------RLAECELRESERGRAGKGWWGEAAGDGLKMLQVILEFIPEGLA 64

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
                   +   +  Y + T  + +   +     + L +     +    + +++     V
Sbjct: 65  IAEGPDATMSMVSR-YGRETFGKSLEDMQGCSY-QNLLRRVTVLKADGVTPVKREEWPLV 122

Query: 267 STLEHGNNKSYKIVRVLNSFGEAG---------------------IAIDVSKEITVNDQL 305
            T+  G     + + +L   G                          +D++ +  + D  
Sbjct: 123 RTIATGEVVKEEELVILRPDGSQVPILCNAGPIRDEAGNIRGGMLFWVDITTQKQLRDSF 182

Query: 306 THTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             + E    I     V +A    +      N  + E+       LA    N  + + +  
Sbjct: 183 RESEERFRAIFDQAAVGMAQTAPDGRFLRVNAKYCEMLGYSSEELA----NLSIYDVIYP 238

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPR-GGTIWMFEN 418
            +   E++  +   +     Y  +     K+   +    T  V+   +      I +  +
Sbjct: 239 EDLEEERVLIQRLLDGDIPAYSLARRCYRKNKTIVWTEVTASVVRKPSGEPDYVISVKVD 298

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ +   E       +      ++  + +A  G D R    NPA   +       +    
Sbjct: 299 ISQRRKAEELLLRREQEYRNLAENSPDIIARIGRDMRYLYINPAGGRIRGAPPAHIIG-- 356

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             + +      +          A + ++  +E    + +  L    + +  I+P  +   
Sbjct: 357 --KTVYQLGYTHEFSKRAEKRVARLFSTGKEETFEYEFSSSLTGSRIFQARIVPERDKHG 414

Query: 539 -----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                ++   ++TD    E  L    EA  +A+  K+ F+ ++S+E+R+P+  IIG T+L
Sbjct: 415 DVESALIISRDITDLKLMESELKAAKEAAEEANRTKSQFLANMSHEIRTPMNGIIGMTEL 474

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
              S     N   S Y+     S+  LL ++NDILDLA +++G +++          L  
Sbjct: 475 ALASCA---NVDCSTYLGMARKSARNLLGIINDILDLAKIESGKVEIEEYAFDARASLEA 531

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
           +  ++A       +R     D  +      D +RLLQ+F+ ++ NA+ F+ +G   +   
Sbjct: 532 LFATMALDAERKGLRFDARIDANVPVRLKGDERRLLQVFTNLIGNAVKFTLEGGIAVKVL 591

Query: 710 ---------LKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
                    L++  D        SV + G  IP D    +F  F         +  G GL
Sbjct: 592 VADPVSLGLLESCPDPAAVCLFASVSDTGIGIPADQIGRIFESFAQVGGLAHLKFDGTGL 651

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINC 786
           GLSI +  + L GG + + S     +T   
Sbjct: 652 GLSISKRLVELMGGKLWVESEPGKGSTFTF 681


>gi|255039493|ref|YP_003090114.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254952249|gb|ACT96949.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1204

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 108/535 (20%), Positives = 217/535 (40%), Gaps = 26/535 (4%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           + +  +++  ++      IA   S+E  ++  L     I  + +  I   +++  L   N
Sbjct: 396 DTRDLELLEFISGQVAMAIARKQSEEE-LSKYLARLNAIFDSSSHLIWSVNKSLQLTSFN 454

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-KDT 391
           R++ +L       L   PS     E      ++    N +T +       +    + +  
Sbjct: 455 RNYADLIH---NQLGVRPSLQSSAEKF--GWRMVGNSNRRTLETKYRQALRGEPQYFEFK 509

Query: 392 WHLPNGQTLHVIVTSNPR---GGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
               +   + +    NP     G I     +  ++T + + E       ++     ++L 
Sbjct: 510 IDRKDAGEMWLEFYLNPIHYADGVIEEVSGIARDITRRKEAELSLRHSEELFRGIFENLQ 569

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +        G I + + +           +  G  I    A   R ++         ++ 
Sbjct: 570 DIYCRINRLGEITMISQSVLKRLGYLPEEV-IGHKITEFFADKKRIHSALIRLRKTKSL- 627

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            +F+       GT      ++L ++       +  +   ++T+  R E  L +  E   +
Sbjct: 628 RNFEITMYRKDGTERQFMINMLMFTNDKGKPTEVAVLARDITELKRNELELLKAKEHAER 687

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           + ++K  F+ ++S+E+R+P+  +IG  DLL  +    LN++Q  YV  I  SS  LLN++
Sbjct: 688 SLKVKEGFLANMSHEIRTPMNGVIGMIDLLGET---PLNTEQKDYVLTIKRSSETLLNIL 744

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           NDILDL+ ++AG M+L+ + I + +LL ++              +       +    +AD
Sbjct: 745 NDILDLSKIEAGKMELHEAPIAVEELLLKLVSLFGQTAKSKGNTLSYHVGPDIPKFIIAD 804

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVF 739
           + RLLQI S + SNA+ F+  GS  V L   + +G        V+++G  I     + +F
Sbjct: 805 QTRLLQIMSNLTSNALKFTENGSVKVFLTLVKKDGLFHKIKVDVQDSGIGISATDKQILF 864

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             F    +  ++   G GLGL+I +    L  G + + S+    +T      +KE
Sbjct: 865 TSFTQLDNSSRKSFGGTGLGLAISKQLCALMNGEIGVESTLGEGSTFWFTFETKE 919



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 103/310 (33%), Gaps = 45/310 (14%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--- 227
           + G  +         ++LS +++    +FDS   L+W  +++  +   N +Y        
Sbjct: 406 ISGQVAMAIARKQSEEELSKYLARLNAIFDSSSHLIWSVNKSLQLTSFNRNYADLIHNQL 465

Query: 228 -TEGIVFQKAIGESRKLFKEEIKKRMI-----SSSALEKNFCETVSTLEHGNN-KSYKIV 280
                +   A     ++     ++ +      +     + F   +   + G     + + 
Sbjct: 466 GVRPSLQSSAEKFGWRMVGNSNRRTLETKYRQALRGEPQYFEFKIDRKDAGEMWLEFYLN 525

Query: 281 RVLNSFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
            +  + G      GIA D+++       L H+ E    I  NL       ++   +   +
Sbjct: 526 PIHYADGVIEEVSGIARDITRRKEAELSLRHSEELFRGIFENLQDIYCRINRLGEITMIS 585

Query: 333 RS-FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           +S    L  +    +       ++ EF     ++   L             KS    + T
Sbjct: 586 QSVLKRLGYLPEEVIG-----HKITEFFADKKRIHSALIR-------LRKTKSLRNFEIT 633

Query: 392 WHLPNGQ----TLHVIVTSNPRGG---TIWMFENLTVQVDLETKY-------NTLVKVQG 437
            +  +G      +++++ +N +G       +  ++T     E +           +KV+ 
Sbjct: 634 MYRKDGTERQFMINMLMFTNDKGKPTEVAVLARDITELKRNELELLKAKEHAERSLKVKE 693

Query: 438 ETIDHLSEGV 447
             + ++S  +
Sbjct: 694 GFLANMSHEI 703



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 93/285 (32%), Gaps = 19/285 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
              +  L +L +    F  +  ++  +   +       + L      D+L+       + 
Sbjct: 11  QTIHHTLQHLNLIGITFSPDFVIRSVSPHALMKTGWHESELVGFSIFDKLI------PRD 64

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTI----WMFEN 418
            E    +  +E I    +  E  +  +    G      + S   + + G +     + ++
Sbjct: 65  EEHEVRQMLEEGIQGK-RKLEQREVPFLAQKGTLRTFSINSVLIHQQNGDVECITLVGDD 123

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T +  +E+          + +D+ S+ + +   DG+    N A+R +     + ++   
Sbjct: 124 ITRRRRMESAIAKSNSQLQDLVDNTSDLIQLVAIDGKFIFVNKAWREVLGYGLDEIAS-M 182

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            + +I     +         +   I   SF+    +  G    ++ SV            
Sbjct: 183 RMEDILHPQHKEEALEQLKKIEQGIANPSFEAVFMNRDGKKVFVAGSV-NCRFDNGKPTA 241

Query: 538 TMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYEL 580
                 + T+ +RAE+A  L           +  + F   +  EL
Sbjct: 242 FRCILNDFTEKIRAEKAQNLYYSIANWTVNTQNLDEFYHGIHDEL 286


>gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 590

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 29/394 (7%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           H+ V S+   G +  MF  LT ++     + +   +     + ++++GV     +G++  
Sbjct: 213 HIEVKSDDEIGKLTNMFNFLTTRLKETMEEISDEKEKMEAILINMADGVIALNDEGQVIH 272

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NP  R +   EE        +           N+    D+   +   FD+       TL
Sbjct: 273 INPVARQMLSLEEGINGQNFSLE---------LNKLLNIDMKQLLNNDFDN-----SETL 318

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               D++L+    PL     ++  + V   +  +  L          + ++  FV +VS+
Sbjct: 319 IKTKDAILKSIYAPLRRENRIVGHIFVFQDITKQHRL----------EAMRKEFVANVSH 368

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT I  + + L    L        Q+   I+  +  +  LV+D+L+L+ +D    
Sbjct: 369 ELRTPLTTIKSYAETLLDGALEEA-EISRQFTSVINDEADRMTRLVSDLLELSRLDNKET 427

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           K +   I +  +L  V   +   +      IK     +L    AD  ++ Q+F  ILSNA
Sbjct: 428 KWDMKPIDIGTILKNVITKMDVNIKRKGQTIKANIPEELPEVFADNDKVEQVFQNILSNA 487

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
             ++ +G  + +           + K+ G  IP++    +F RF        R   G GL
Sbjct: 488 YKYTPEGGKIYIDVEYAEKMVKVTFKDTGVGIPKEDLPRIFERFYRVDKTRSREMGGTGL 547

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLSI    +  HGG +SISS     T++  +IP+
Sbjct: 548 GLSIAREIVQAHGGEISISSELGKGTSVIIQIPA 581



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             ++D+      IL N+   +   +    +   N    ++  ++      N S +  L  
Sbjct: 241 EEISDEKEKMEAILINMADGVIALNDEGQVIHINPVARQMLSLEEGINGQNFSLE--LNK 298

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           L + +           K+ + + + +SET   T           +   N   G I++F++
Sbjct: 299 LLNIDM----------KQLLNNDFDNSETLIKTKDAILKSIYAPLRRENRIVGHIFVFQD 348

Query: 419 LTVQVDLETKYNT 431
           +T Q  LE     
Sbjct: 349 ITKQHRLEAMRKE 361


>gi|170077996|ref|YP_001734634.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885665|gb|ACA99378.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1019

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 206/519 (39%), Gaps = 40/519 (7%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           ++ K        +     +       A+ D   Y    N +  E+   D   L      D
Sbjct: 359 EIEKAQIRAASASRYLTAIETAIDGYAVLDDRGYFLEVNVALGEMTGYDCDELLQRSIFD 418

Query: 354 ELL-EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            L+ + L  A  L E  + +  K      +K  +  +    L           S  +   
Sbjct: 419 LLITDNLDPAQLLTEWGDRRRLKLYQQWRHKKGQIREMQLSL-------TTDLSEDQSRF 471

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
               +++T Q           +     I      + ++  DG I   N  +  L   +  
Sbjct: 472 FIFVQDITQQKQANAALGESEQRLYRAIQDAPFPILLYASDGEILQLNRTWTVLTGYDI- 530

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD----SVLEY 528
                T I  IAA  ++ Y E+    L   I   ++ +  +  G   +L+      + ++
Sbjct: 531 -----TEIPTIAAWAAKAYGEAYLTAL-QGIEKVYEIQNSTHDGEYAILTKDGEKRIWDF 584

Query: 529 SIIPL---PNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           S  PL   P+ + +     ++VTD    E AL    +   +A+  K+ F+ ++S+ELR+P
Sbjct: 585 SSAPLGTLPDGRKLQITMAMDVTDRKADELALQAAKKQAEEANRAKSLFLANMSHELRTP 644

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G+  +L   +  SL+++Q   +  I      LL L+ D+LD + ++A  ++L  +
Sbjct: 645 LNGILGYAQILMFDE--SLSAEQKSSLSIIEQCGQHLLRLIADVLDFSKIEAQRLELIPT 702

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
            +  +  + ++ Q+   K  E  + +    D  +    + D QRL Q+   +L NA+ F+
Sbjct: 703 AVQFHYFILDIIQTCQIKATEKQLLLNYDIDPDIPDYLLVDDQRLRQVLLNLLGNAIKFT 762

Query: 703 SKGSTVI-LKAARDNG-----------DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRG 749
            +GS V+ ++ ++                 F+V++ G  I  +  + +F  F      R 
Sbjct: 763 HQGSVVLDVQLSQPPQTPPKSPKHHWHRVHFAVRDTGCGIDPENHQKIFLPFEQIGDRRS 822

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  G GLGL+I +  + + GG + ++S     +  +  +
Sbjct: 823 RPHGTGLGLAISQKLVAMMGGELQLTSYPNKGSCFSFDL 861


>gi|239907994|ref|YP_002954735.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797860|dbj|BAH76849.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1093

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 114/658 (17%), Positives = 235/658 (35%), Gaps = 61/658 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  + +        +       + L  S   ++   D  G +++ N       E  G   
Sbjct: 303 VRRQSSRLDQLLVAVGQSEERHRELVQSAASVILRLDHQGRVVFCNAF---GLEFFGFTL 359

Query: 234 QKAIGESRKLF----------KEEIKKRMISSSALEKNFCETVSTLEHGNNK-------- 275
           ++ IG    L                     +        E+ + L   + +        
Sbjct: 360 EEMIGRDIGLLIDLPDVPGTEDSADAASWPQALTAIAQAPESAAALTRQHRRKNGELAWI 419

Query: 276 SYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRY 327
           ++ +  +  + G       I  D+++   + + L  +              I  +D    
Sbjct: 420 AWSLRGLRAATGGVSEILCIGNDITERKRIEEALRASEARYTLVARGANDGIWDWDLRTN 479

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           + +++  ++E+       + +    DE  + +   +   E +     +     V   +  
Sbjct: 480 IVYYSPRYLEILGYTPDEVQS--LLDEWTKRIHPDDA--ENVIRANKRCADGEV--DNFA 533

Query: 388 HKDTWHLPNGQTLHVIVTSN---PRGGTI----WMFENLTVQVDLETKYNTLVKVQGETI 440
            +      +G    ++          G +        ++T +   E           +  
Sbjct: 534 VEYRMRHKDGAYRWILGRGASLKDERGVVIRMAGTHTDVTRRKRDEEALRESQDQLAKIF 593

Query: 441 DHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
                G+A+    DGRI   N     ++   ++ +     I   A     +    +   L
Sbjct: 594 RFTPVGIAITTRRDGRIVDVNETGARMFGHVKSEV-----IGRTAHEVGLWRRTEEREAL 648

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVRAERALT 556
            A +  +     K L    +  S   + YS +          +   V++T+    E+AL 
Sbjct: 649 LAEMARAGSIFGKELDLRHKNGSTVTVLYSAVANHAYGEPCILSVLVDITERKAMEQALR 708

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              EA   A+  K+ F+  +S+E+R+P+  I+G  D+L  +   SL S Q+  V+ I  +
Sbjct: 709 RSKEAAESANRAKSEFLSTMSHEIRTPMNTILGMVDVLAGT---SLTSDQTHAVKSIELA 765

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL L+NDILDL+ ++AG M +   +  + +L  ++   +        + +++   G 
Sbjct: 766 GAGLLGLLNDILDLSQIEAGGMVIEEKSCDIVELTTQLADMMRPDADRKGLELRLEIRGD 825

Query: 677 LGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIP 731
           L         R+ QI   +L NA+ F+ +G  V+  A+     D      +V++ G  IP
Sbjct: 826 LPPRLFCCPDRIRQILVNLLGNAIKFTQQGHVVLEVASTPSLTDGPRLRLAVRDTGIGIP 885

Query: 732 EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            D    +F+RF     +   Q  GVGLGL+I +    L GG +++ S+    +T    
Sbjct: 886 ADKQAVIFDRFTQINASANRQFGGVGLGLAICKKLAELMGGRIAVESAPGQGSTFTLS 943


>gi|295703343|ref|YP_003596418.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium DSM 319]
 gi|294801002|gb|ADF38068.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium DSM 319]
          Length = 1012

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 112/638 (17%), Positives = 227/638 (35%), Gaps = 44/638 (6%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             + ++       ++ LF+    +V   D  G+I   N    + T       +K      
Sbjct: 243 QEEVRESQLKEEYYQSLFNYNPNIVCAVDLYGNIQTINPKGIELTGYTLHQMEKIPFPYM 302

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-----NSFGEAGIAIDVS 296
               E+ ++ M  S + +  + E     +       ++ ++         G   IA DV+
Sbjct: 303 FREAEQAEEYMWKSLSGDSVYYEATLIRKDNQPVYVEVTQMPIIVHGQIKGSYVIAKDVT 362

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIF---DQNRYLQFHNRSFVELWEIDLAFLATN 349
                  QL    +     L     AI  F   D+           V     +       
Sbjct: 363 DRKKAQQQLLDLQKDLKRTLSQQDGAIFKFVKNDKGYIHTMCEGKMVREMGYE-EIDVVG 421

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            + +E L         PE  ++    +  +    + E       L +    +  +  +  
Sbjct: 422 KTLEEFL---------PE--SYAKENKRYYEKAWAGEKVSYEVLLNDF-AYYTKLIPHIY 469

Query: 410 GG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-AFR 464
            G     I    ++T   +   K      +    +  +SEGV     +G +  +N  A +
Sbjct: 470 KGEVQEVIGSIVDITDLHEAREKLAKSESMYRSVLSTMSEGVVFHDLEGNLIAANAYAAK 529

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSD 523
            L    +  LS      +           +         + + +  R ++ G  L     
Sbjct: 530 ILNVPYDQMLSVNPFGLDWEIIHPDGTPFALEDIPSVRCLHTKEPVRNTVMGIYLNEKKL 589

Query: 524 SVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKN-------EALRKADEIKNSF 572
           + L  +  PL  +      ++TF ++T     E+ L   N       E   KA++ K+ F
Sbjct: 590 TWLSVNAEPLQESKYYKGVVVTFYDITKQQEQEQDLLHSNQQMIIAKEEAEKANQAKSEF 649

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  VS+ELR+PL +I+G+  +L+      L  KQ   +  I  +   LL L+N+ LDL+ 
Sbjct: 650 LSKVSHELRTPLNSILGYAQILEEQGEKDLTEKQLNRIRKILKAGNHLLYLINETLDLSK 709

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIF 691
           +++G + +N   + + + + +  + +     + +  +       +      D  R  QI 
Sbjct: 710 IESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHAYQEVFIEVDELRFQQIL 769

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             +L+NA+ +S     + +           S+++ G  IP      +F  F    +R ++
Sbjct: 770 LNLLTNAIKYSPAYRDITIYTDITQHHVTISIEDKGFGIPASELNRIFEPFYRV-NRLEK 828

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G G+GL++V+  + L  G   + S +   +T   R P
Sbjct: 829 DGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFP 866


>gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 925

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 116/629 (18%), Positives = 220/629 (34%), Gaps = 45/629 (7%)

Query: 195 FKVLFDSLDFLVW-HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR-- 251
              L  S    +W  R     +++  +  ++                  L  E++     
Sbjct: 23  LMDLLHSCPDPIWCIRLPDFKLVFLTLGAERLLGIPLGELPLRASVGELLVPEDLPLWKR 82

Query: 252 -MISSSALEKNFCETVSTLEHGNNKSYKIVRVLN------SFGEAGIAIDVSKEITVNDQ 304
            +  +    +   E       G      +  VL            GIA+DVS      D 
Sbjct: 83  FLQEAQERGEARAELRVRRGDGGEVWLDLRGVLTRDERGQPRYLTGIAVDVSDRRRAEDA 142

Query: 305 LTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L  +      +L++   A  + DQ   +   N +F+ L       +            L 
Sbjct: 143 LRRSEARWRAVLNSTGDAFLMADQGGAITDCNEAFLRLGGYRKEEVLG----------LS 192

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---PRGGTIWMF- 416
               +PE        +      +    ++      +G  L V V ++     G    +F 
Sbjct: 193 LRRVVPEDQLGILDYQWHLGALQGQCDYEVDLLCRDGTRLPVWVQADRVLQEGEPPLLFA 252

Query: 417 --ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              +L+    ++ +    V      +D +   V      GR    N AF  L   +   +
Sbjct: 253 FLRDLSASRKVQEEQRHQVAFLRTLLDTIPSPVFYKDAQGRYLGCNRAFLDLVGRDLKEV 312

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T    + A+       SD   L      SF+   ++ +G           +      
Sbjct: 313 EGRTAQEFLPASLLPQVVRSDMELLRHPGTLSFETPWQAGKGGERHFVVQKASFGDEREG 372

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +   V +T+  R E  L E  +    + E K +F+ H+S+E+R+P+  I+G ++LL
Sbjct: 373 VLGFVGVMVEITERKRMEEDLREARDRAESSSEAKMAFLSHMSHEIRTPMNAIVGLSELL 432

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                   +  Q + +  I  +S  L+ L+ DILDL+ ++AG ++L++    L +    V
Sbjct: 433 LEEC---PHDPQREQLRLIREASGSLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSV 489

Query: 655 KQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +  +     +      +    G F+ D  RL Q+   ++ NA+ F+ +G  V + A 
Sbjct: 490 CSLLGMEAKRKGLVFSWDVAPSAQGFFLGDSFRLRQVLWNLVGNAVKFTERG-RVHVTAW 548

Query: 714 RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
            + G+       F V++ G  I     + +F  F         +  G GLGLSI    + 
Sbjct: 549 GEQGEGGARKVHFRVQDTGIGILPVNLERIFEYFSQGETLLHRRFPGTGLGLSISRHLVR 608

Query: 767 LHGGHVSISSSDEGVTTINCRI---PSKE 792
             GG + ++S     +  +  +   P+ E
Sbjct: 609 AMGGEILVASEPGAGSVFSFSLVLSPAPE 637



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 91/283 (32%), Gaps = 25/283 (8%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
                +     +   +      +  ++   N     +  G     E++G L  R  +P+ 
Sbjct: 144 RRSEARWRAVLNSTGDAFLMADQGGAITDCNEAFLRL--GGYRKEEVLG-LSLRRVVPED 200

Query: 109 DTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI 168
              +L +  W       +     + L ++G    L    Q D  ++ EG      AFLR 
Sbjct: 201 QLGILDY-QWHLGALQGQCDYEVDLLCRDGT--RLPVWVQADRVLQ-EGEPPLLFAFLRD 256

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           LS      E            + ++  + L D++   V+++D  G  L  N ++      
Sbjct: 257 LSASRKVQEEQR---------HQVAFLRTLLDTIPSPVFYKDAQGRYLGCNRAFLDLVGR 307

Query: 229 EGIVFQKAIGE---SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
           +    +    +      L  + ++  M           ET      G  + + + +    
Sbjct: 308 DLKEVEGRTAQEFLPASLLPQVVRSDMELLRHPGTLSFETPWQAGKGGERHFVVQKASFG 367

Query: 286 F------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                  G  G+ +++++   + + L    +   + + A   F
Sbjct: 368 DEREGVLGFVGVMVEITERKRMEEDLREARDRAESSSEAKMAF 410


>gi|227821363|ref|YP_002825333.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227340362|gb|ACP24580.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 775

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/522 (23%), Positives = 230/522 (44%), Gaps = 50/522 (9%)

Query: 307 HTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                L      +  FD  NR L F +RS  E+  +        P +  +L F  +A  +
Sbjct: 262 RVETALSRGRCGLWDFDLANRRL-FWSRSMYEMLGM--------PGDSSVLSFGDAARLM 312

Query: 366 -PEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLH------VIVTSNPRGGTIWMFE 417
            PE    ++  +       +  +      H  +G  +       VI T + +   I +  
Sbjct: 313 HPEDRGVYRVARAIAKGSERQIDQVFRMRH-ADGHYVWLRARAQVIRTVSGKTHLIGIAM 371

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +Y    +   + I+  SE   ++    R+ + N  ++  ++  ++ L PG
Sbjct: 372 DVTEQHRLAQRYAEADQRLTDAIECTSEAFVLWDKHDRLVMCNTHYQQAYQLPDHVLVPG 431

Query: 478 THI-------------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD- 523
           T               R +A      ++++    L        +D R    G + + +D 
Sbjct: 432 TERAVVHAAAARPVVERRVADPDRSNHSQTSEVQLADERWLQINDRRTRDGGLVSVGTDI 491

Query: 524 SVLEYSIIPLPNAQT--------MLTFVNVTDSVRAERALTEKN-----EALRKADEIKN 570
           ++L+   + L  ++         +       +  +AE ++   N     E    A+  K+
Sbjct: 492 TLLKRHQVRLRESERRLMATIGDLSASRITLERQKAELSVANANYQAEKERAEAANRAKS 551

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILD 629
            F+ ++S+ELR+PL  I+GF+++L+    G L + K  +Y   I  S   LLN++NDILD
Sbjct: 552 EFLANMSHELRTPLNAILGFSEILQNQMFGPLGSEKYDEYSRDIHESGKHLLNVINDILD 611

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ ++AG M++    I L  L+ E  +       + NIR+       L +  ADR+ + Q
Sbjct: 612 MSKIEAGHMRITRERIDLAPLIEETLRFTTIPAEQKNIRVVQEISSGL-TMFADRRAMKQ 670

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           +   +LSNA+ F+++G  + L+A +  G    ++ ++G  IP    + + + F  V + +
Sbjct: 671 VLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPRYALQKIGHPFEQVQSQY 730

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + G GLGL+I  S   LHGG + I S+++  T I+ RIP
Sbjct: 731 AKSKGGSGLGLAISRSLTRLHGGRMKIHSAEKVGTIISVRIP 772



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 101/311 (32%), Gaps = 32/311 (10%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETE 229
           +    +  A++      L    ++ +         +W  D     + W+   Y +     
Sbjct: 244 IQAKRARDADSVFAESNLRVETALSRGRCG-----LWDFDLANRRLFWSRSMY-EMLGMP 297

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-----EHGNNKSYK-----I 279
           G     + G++ +L   E +     + A+ K     +  +       G+    +     I
Sbjct: 298 GDSSVLSFGDAARLMHPEDRGVYRVARAIAKGSERQIDQVFRMRHADGHYVWLRARAQVI 357

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
             V       GIA+DV+++  +  +         + +   + A  ++D++  L   N  +
Sbjct: 358 RTVSGKTHLIGIAMDVTEQHRLAQRYAEADQRLTDAIECTSEAFVLWDKHDRLVMCNTHY 417

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            + +++           D +L        +         +  +    +S+ +      L 
Sbjct: 418 QQAYQLP----------DHVLVPGTERAVVHAAAARPVVERRVADPDRSNHSQTSEVQLA 467

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-G 454
           + + L +       GG + +  ++T+    + +     +    TI  LS           
Sbjct: 468 DERWLQINDRRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRITLERQKA 527

Query: 455 RIKLSNPAFRS 465
            + ++N  +++
Sbjct: 528 ELSVANANYQA 538


>gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
 gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
          Length = 798

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/419 (21%), Positives = 184/419 (43%), Gaps = 18/419 (4%)

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           ++++  +L N    H+++ +      + M  ++ + + ++ +Y        E  D+L   
Sbjct: 246 SYEENNYLKNLIKEHILINALSF--VVLMILHIVIYMAIKNRYREKEVKDKEVKDYLDIA 303

Query: 447 ---VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
              + V   +  + + N     L    ++ +     I N      +        D+    
Sbjct: 304 QVLIMVLDNNKNVTMINTEGAKLLGYSKDEIIGKNWIENFLPKNIQLEINELASDIIEEK 363

Query: 504 IT--SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
               ++++   +  G L+L+                 + +  ++T+  R    L +    
Sbjct: 364 EKYPNYENYVLTKSGELKLILWKYSTLFDDQGNTIGLLTSGQDITEQKRTYLELNKAKYE 423

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             KA++ K+ F+ ++S+E+R+PL  I+GF +LL        + K+ + ++ I  SS  L+
Sbjct: 424 AEKANKSKSEFLANMSHEIRTPLNGIMGFVNLL---YKDEKDIKKQEKLKIIKDSSYTLI 480

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           ++VNDILD + +++G++ +      + D +++       +  E NI IK+  D K+  F+
Sbjct: 481 DIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQRAKEKNITIKLSIDDKIPKFI 540

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSV 738
             D  R  Q+FS +LSNA+ FS++ S V +     +   +    V ++G  I      ++
Sbjct: 541 EGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTNEIYCEVLDSGVGISPSKTDTI 600

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP---SKE 792
           F  F        R   G GLGLSIV+  + L GG + ++S     +T    +P   +KE
Sbjct: 601 FEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVNSELGVGSTFYFTLPIIEAKE 659


>gi|183220127|ref|YP_001838123.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910247|ref|YP_001961802.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774923|gb|ABZ93224.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778549|gb|ABZ96847.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 1164

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 127/662 (19%), Positives = 256/662 (38%), Gaps = 58/662 (8%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFD----SLDFLVWHRD-QAGDILWANIS--YKKNTET 228
           SE  E  L+ K   + ++  +VLF+    + +   W  D     I WA  +    +  E 
Sbjct: 227 SERKEKELEIKNQRDELNRIRVLFEETNAAANVGAWEVDLVHNSIYWAKETKRIHEVPED 286

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH--GNNKSYKIVRVLNSF 286
                + A        ++   K+    +   +   E +  ++   G +K  + +      
Sbjct: 287 YVPNLETAFQFYPVESEQIALKKAFEEAIKNRKSYEQILQIKTFTGKSKWVRTIGHGVFE 346

Query: 287 GEAGIAI-----DVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFV 336
            E  I +     D++  + ++ Q       L  +  A     I   D N  +   N+   
Sbjct: 347 NEKCIRVFGSFQDITNSVNLDKQKEEALSKLETILDATTHVTIIGTDINGIITHFNKGAE 406

Query: 337 ELWEIDLAFLATN------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
              +     +            DE+L    S ++      +        +   + ++H+ 
Sbjct: 407 YHLQYTAEEMIGKTSPSILHKEDEVLYRAESLSQEFGVPIFGFETFVHKARLGAFDSHEW 466

Query: 391 TWHLPNGQTLHV----IVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           T+   +G    V      + NP+G   G + +  +++ Q   E       +     ++  
Sbjct: 467 TYIRKDGTEFPVQLVITASKNPKGEITGFLGIGIDISAQKATEEALRESERRWQFALEGS 526

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            +G+  +  +      +  ++++    ++ +       +I+    R + +     L A  
Sbjct: 527 GDGIWDWNAETDQVYFSNQWKAMLGYADSEIGT-----DISEWEKRVHPDDLNQCLLALE 581

Query: 504 --------ITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                   I   +   K   G+ + + D   V+E +    P  + + T  ++T     E 
Sbjct: 582 KHYNGETNIYMNEHRMKCKDGSYKWILDRGKVIERNEDGKP-LRVIGTHTDITHRKILEN 640

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A   K++F+ ++S+E+R+PL  +IGF DLL  +    LN  Q +Y+E +
Sbjct: 641 DLIIAREKAENASIAKSNFLANMSHEIRTPLNGVIGFADLLMRT---DLNQVQRKYMETV 697

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+L+NDILD + +++G M+L    + + DLL+++ + +  K +E  + + +  
Sbjct: 698 HLSALSLLDLINDILDFSKIESGKMELYKERVNIFDLLHQIAEIVKHKAYEKGLELILNI 757

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGS 728
             K+      D  RL QI   ++ NA+ F+ KG   + L A   N    +F+F V + G 
Sbjct: 758 SPKVPRNVFVDSLRLRQILLNLIGNALKFTLKGEIQIKLTATPVNQNEFEFLFEVIDTGI 817

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ++    +F  F        R   G GLGLSI    + L    + + S     +    
Sbjct: 818 GINKENQNKIFEVFAQADSSTTRQFGGTGLGLSISSKLLQLFDSKIELESELNHGSRFYF 877

Query: 787 RI 788
           + 
Sbjct: 878 KF 879


>gi|303248367|ref|ZP_07334628.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490275|gb|EFL50189.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1178

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 121/712 (16%), Positives = 249/712 (34%), Gaps = 93/712 (13%)

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV----FKVLFDSLDFLVWHRDQAG 213
           R+      L    +    + L     +  +    +      ++  F S    ++H    G
Sbjct: 201 RLVRGEGELIDRRVRERTARLERMVERLGREKAEVEARERRYRGSFHSAPLGMFHSTHEG 260

Query: 214 DILWANISYKKNT--ETEGIVFQKAIGESRKLFKEEIKK----RMISSSALEKNFCETVS 267
             L AN +       +    + ++    +R+++ +  ++    R+++       F  TV 
Sbjct: 261 GYLDANQALATLYGYDNPDALRRRVKDIARQIYDDAARREILTRLLAEHGHVSGFEATVR 320

Query: 268 TLEHG---NNKSYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIA 320
             +       +   +  V  S GE     G   D +        L     I+   +  +A
Sbjct: 321 RRDGTLVSTRR--DVRAVTGSEGEILHYEGFVQDATALDNAGQYLRRYVRIIAASSDMVA 378

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE--------QLNWK 372
           + D +    F N ++V  +  +   +      D L      A   P+         + ++
Sbjct: 379 LVDTDGRYLFVNDAYVRAFGREREDILGRRIGDFLGHAFYEATVAPQLAKCLSGTPVMYE 438

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
           TW E      +    H   W L + +   V    +     + + E    +      Y   
Sbjct: 439 TWTELPALGRRYLSVHFAPW-LEDDKPCVVTSVRDMTETRLAVEELRESEKTTSILYRVS 497

Query: 433 VKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN------ 482
             V  E     + H   G+      G +  ++  F +L   + +RL    H+        
Sbjct: 498 SAVASEEDMQVLFHTIHGIL-----GEVVDADEFFIALVDQKHDRLEYVYHVSANEPAPP 552

Query: 483 --------IAATCSRYYNESDGWDLFAAIITSFDDERKSLQG-----------TLELLSD 523
                   +       +++  G D    ++ +    R + +G           T E+   
Sbjct: 553 PLEHVKSLVTPLTRDNFSDFKGADALVEVMRTAHPLRVTRRGMRLSGITCSRRTPEVWLG 612

Query: 524 SVLEYSIIPLPNAQTMLTFVNVT--------------------DSVRAERALTEKNEALR 563
             +      L     +                           +  R   AL    E   
Sbjct: 613 VPIRVRQEVLGVMAVLHYTDATRYGRKDAELLLSVAEQLALGVERRRTLDALCAAKEEAD 672

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+E K+ F+  +S+E+R+P+  I+G T++   ++   L+ +Q  Y++ +  S+  LL++
Sbjct: 673 RANEAKSRFLASMSHEIRTPMNAILGLTEVTLRTR---LSEEQRDYIDTVRDSARHLLDI 729

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVA 682
           +NDILD + ++A  M ++     L++LL  V +++     +  + + +  D G   +   
Sbjct: 730 LNDILDFSKIEACQMTVDVVDYDLHELLRRVIKTLGGAARDKGLWLTLDIDVGVPRNVRG 789

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKS 737
           D  ++ Q+   ++ NA+ F+  G   +  A    G          V + G  IP +M ++
Sbjct: 790 DPGKVRQVLVNLVGNAVKFTEAGGVTVRAALMMPGAGGLPLLGVEVADTGIGIPAEMREA 849

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           VF  F    +   RR  G GLGL+I      L GG + + S+  G +     
Sbjct: 850 VFESFRQADNSTARRFGGTGLGLAISRELARLMGGDIHVRSTPGGGSLFTFT 901


>gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 863

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 182/407 (44%), Gaps = 37/407 (9%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
               ++ +L     L  +     +   + ++ +   + +    G+   +N A   L +  
Sbjct: 196 AIYVLYRSLRKSTLLNQRLTYSEQQTKKLLEAVPVPIVIVNHQGKFYYANQAASHLVENI 255

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-- 528
                    +     + +R++   DG         ++    ++LQG    + D  L    
Sbjct: 256 NEYDPYDDEV-----SSNRFFRFPDGVPYPREQRPTY----RALQGEATQVDDIELRTNG 306

Query: 529 -------SIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                  S  P+ +A       + + ++++D V++++ L E      KA ++K  F+ ++
Sbjct: 307 KRFHLLSSSSPVYDASGNLQYVITSSIDISDRVQSQQRLQEARIMAEKAAKLKEDFLANM 366

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  ++GF++LL+T+   +L++ Q +++  I  +   LL +VNDILD++ ++AG
Sbjct: 367 SHEIRTPLNAMLGFSELLETT---NLDADQQEFLRLIRTAGKNLLTIVNDILDISKIEAG 423

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKIL 695
           +++L      +  L   +K        +  +++ V  D  L +  + D  RL QI   ++
Sbjct: 424 MIQLESIPFSIQMLTASIKAMCQGAATDKGLQLIVEVDPNLPTVFMGDPTRLTQILLNLI 483

Query: 696 SNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           +NA+ F+ +GS  +L    +          F V++ G  +  +   ++F RF        
Sbjct: 484 NNAIKFTKQGSVTLLIEQGERKTSASIPVRFIVQDTGIGMAREALPTIFERFQQADKFTT 543

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP---SKE 792
           R   G GLGL+IV+S   L  G VS+ S+    +     IP   +KE
Sbjct: 544 RYYGGTGLGLNIVKSLTELQKGSVSVESTLGKGSRFTVEIPYVLAKE 590



 Score = 37.6 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 16/167 (9%)

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           G  +     L   ++  +Y  L ++TL  ++L+      K L +++   +   +  G   
Sbjct: 185 GATAALVMILW--AIYVLYRSLRKSTLLNQRLTYSEQQTKKLLEAVPVPIVIVNHQGKFY 242

Query: 217 WANISYKKNTET---EGIVFQKAIGESRKLFKEEI---KKRMISSSALEKNFCETVSTLE 270
           +AN +     E          +        F + +   +++  +  AL+    +      
Sbjct: 243 YANQAASHLVENINEYDPYDDEVSSNRFFRFPDGVPYPREQRPTYRALQGEATQVDDIEL 302

Query: 271 HGNNKSYKIVRVLNSFGEAG--------IAIDVSKEITVNDQLTHTY 309
             N K + ++   +   +A          +ID+S  +    +L    
Sbjct: 303 RTNGKRFHLLSSSSPVYDASGNLQYVITSSIDISDRVQSQQRLQEAR 349


>gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1129

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 169/383 (44%), Gaps = 20/383 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E+     +      +D +   V  F  +G I   N AF SL   +E   + GT
Sbjct: 342 IRDRKKAESALQGQLSFMQVLLDTIPNPVYYFDKNGIILGCNRAFSSLLG-KEGWGTIGT 400

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDER----KSLQGTLELLSDSVLEYSIIPLP 534
            +  +  T +         DL   ++   +  R      + G       +   + +    
Sbjct: 401 SMVELLPTKA----AEKLMDLGERVLNGHEPVRFQLPMDIDGQEYRFFFNQAAFRLNE-N 455

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N+  +    +VT  ++    L +  E   +A+  K++F+ ++S+E+R+P+  ++G T+L 
Sbjct: 456 NSGVVGVMEDVTALIQNAVELRKAKEEAERANRAKSAFLANMSHEIRTPMNAVLGMTELA 515

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +     +  Q +Y+E I  +S  L++++NDILD++ +++G M+++     L ++  + 
Sbjct: 516 LETTY---DEDQREYLETIHEASCSLMDIINDILDISKIESGHMEIDSHPFDLGEVAWKS 572

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +A + H   + + V  D +L   ++ D  R+ QI   +LSNA+ F+ +G  ++   A
Sbjct: 573 ASYLAKEAHGKGLELNVDIDEELAESYIGDSVRIRQIMVNLLSNAVKFTDEGEILMSVKA 632

Query: 714 RDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINL 767
            +           +++ G  + E     +F+ F+           G GLGLSI +  + +
Sbjct: 633 MEKTAKMDSVEIRIEDTGIGLSEKEIARIFSPFIQADVSTTKRYGGTGLGLSICKKLVEI 692

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
            GG + + S+    +  +  IP 
Sbjct: 693 MGGKLEVQSAPGKGSVFSFTIPL 715



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 11/146 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + +E+ +       L   +S  +VL D++   V++ D+ G IL  N ++      EG  +
Sbjct: 338 LKTEIRDRKKAESALQGQLSFMQVLLDTIPNPVYYFDKNGIILGCNRAFSSLLGKEG--W 395

Query: 234 QKAIGESRKLFKEEIKKRMISSSAL----EKNFCETVSTLEHGNNKSYKIVRVL-----N 284
                   +L   +  ++++          +     +     G    +   +       N
Sbjct: 396 GTIGTSMVELLPTKAAEKLMDLGERVLNGHEPVRFQLPMDIDGQEYRFFFNQAAFRLNEN 455

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
           + G  G+  DV+  I    +L    E
Sbjct: 456 NSGVVGVMEDVTALIQNAVELRKAKE 481



 Score = 42.2 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 29/167 (17%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E  +  QL+    +L  +   +  FD+N  +   NR+F  L   +  +     S  ELL
Sbjct: 348 AESALQGQLSFMQVLLDTIPNPVYYFDKNGIILGCNRAFSSLLGKE-GWGTIGTSMVELL 406

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---NGQTLHVIVTSNP----- 408
               +   +          E + + ++        + LP   +GQ               
Sbjct: 407 PTKAAEKLM-------DLGERVLNGHEPVR-----FQLPMDIDGQEYRFFFNQAAFRLNE 454

Query: 409 -RGGTIWMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
              G + + E++T            + +     + +   + ++S  +
Sbjct: 455 NNSGVVGVMEDVTALIQNAVELRKAKEEAERANRAKSAFLANMSHEI 501


>gi|148253661|ref|YP_001238246.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1]
 gi|146405834|gb|ABQ34340.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1]
          Length = 786

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/542 (17%), Positives = 202/542 (37%), Gaps = 61/542 (11%)

Query: 295 VSKEITVNDQLTHTYEILHNLT----VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            +     NDQL  T  +L +      +   + D +      +    E+  ++        
Sbjct: 92  ANALARQNDQLAQTTRLLGDAQRIGRLGHWVTDPSGEFAVWSDELFEIAGLEP---VDQV 148

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           +  ++L+ +      PE +       +       +   +  +  PNGQ   V + +N   
Sbjct: 149 AFAKMLDIIH-----PEDVGAYVRARDRSRATGCAFIQELRFVTPNGQVRWVRIEANASD 203

Query: 411 GTIWMF-------ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
               +F       +++T +   E   +    +  + I+ L+ G  +F  D R  +SN  F
Sbjct: 204 EADGVFRERFGIVQDITERKLAEINADQARLLLMDAIESLTNGFVLFDKDDRFVMSNTMF 263

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--L 521
           R ++      + PG     +      +       D F   +             +E   L
Sbjct: 264 REMFPAWTVLMKPGISFTELMRRAYEHGLIRSKGDRFEEWLARKTAWHLGGSRMIEHREL 323

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTD----SVRAERALTEKNEALRKADEI--------- 568
           +   ++     + +  T+    ++T         E+ L          ++          
Sbjct: 324 NGRWIQSVDHRISDGGTVCLVTDITAFKTVQAELEQKLAYVEAIRSDLEQQTQELEARGA 383

Query: 569 ---------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                          K+ F+  +S+E+R+PL+ ++G  DLL+ +   SL+ +Q +Y    
Sbjct: 384 ELRAARDAAEAANRAKSDFLAIMSHEIRTPLSGMVGMVDLLRGT---SLSEEQKRYTALA 440

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL ++NDILD + ++AG ++       + +L+      +  K     + +KV  
Sbjct: 441 KESADLLLEVINDILDFSKLEAGRLQSECIDFDVPNLVESAVSFMGEKARRRGLDLKVSL 500

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNG--DFIFSVKNNG 727
              L  ++  D  R+ Q+   ++ NA+ F+ +GS + ++A+    D G  D    V + G
Sbjct: 501 APGLPQYLEGDPTRIRQVMLNLVGNAIKFTEQGS-IEVRASHRQLDGGVVDLRIEVIDTG 559

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +  ++   +F+ FV        +  G GLGL+I      + GG + + S     +   
Sbjct: 560 IGMSPEILAQIFDPFVQADTSISRKYGGSGLGLAICRQLCTIMGGSIGVDSELGRGSRFW 619

Query: 786 CR 787
             
Sbjct: 620 FE 621



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 105/318 (33%), Gaps = 45/318 (14%)

Query: 18  TLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLT 77
            + S  +  FG +  M+   ++  +L+ + R+++A       + L+   DQL++   LL 
Sbjct: 59  RIVSLLMLAFGAVVVMI---VLTSMLIRKSRHAIA-----LANALARQNDQLAQTTRLLG 110

Query: 78  ENNCL-------------TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHY 124
           +   +               VW   DE  EI G             D+      +     
Sbjct: 111 DAQRIGRLGHWVTDPSGEFAVWS--DELFEIAGLEPVDQVAFAKMLDI------IHPEDV 162

Query: 125 IKLSKATEKLRKEGQSF--DLVAETQND--CAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
               +A ++ R  G +F  +L   T N     ++IE   S     +      GI  ++ E
Sbjct: 163 GAYVRARDRSRATGCAFIQELRFVTPNGQVRWVRIEANASDEADGV-FRERFGIVQDITE 221

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
             L          +     +SL       D+    + +N  +++      ++ +  I  +
Sbjct: 222 RKLAEINADQARLLLMDAIESLTNGFVLFDKDDRFVMSNTMFREMFPAWTVLMKPGISFT 281

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK-----------IVRVLNSFGEA 289
             + +      + S     + +    +    G ++  +           +   ++  G  
Sbjct: 282 ELMRRAYEHGLIRSKGDRFEEWLARKTAWHLGGSRMIEHRELNGRWIQSVDHRISDGGTV 341

Query: 290 GIAIDVSKEITVNDQLTH 307
            +  D++   TV  +L  
Sbjct: 342 CLVTDITAFKTVQAELEQ 359


>gi|296137724|ref|YP_003644968.1| sensory box histidine kinase/response regulator [Salinibacter ruber
            M8]
 gi|295981893|emb|CBH22851.1| sensory box histidine kinase/response regulator [Salinibacter ruber
            M8]
          Length = 1501

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 137/801 (17%), Positives = 286/801 (35%), Gaps = 95/801 (11%)

Query: 49   NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
             ++A+ + E    +  + +  +++  +   ++   ++ D  +                 T
Sbjct: 417  QAIARDITERKRAVEALQESEARFRIMFERHSAPMLLID-PESGAIRDANASAAEFYGYT 475

Query: 109  DTDLLSFENWLKFHHYIKL-SKATEKLRKEGQS-----FDLVAETQNDCAIKIEGRVS-- 160
            D +       L       L +      R + +      F      ++  A  +E R +  
Sbjct: 476  DEEW----ERLHVQDLNDLPADEVAARRADAEGGEQNRFIFPHRLKSGEARTVEVRSTPI 531

Query: 161  ---GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
               G+     I+       E  E      KL      FK LF++    ++  D  G IL 
Sbjct: 532  EVNGTALLFSIIHDITAREEARE------KLRRSRRKFKTLFETSHDAIFLIDPEGHILD 585

Query: 218  ANISYKKNTETEGIVFQKAIGESRKLFK--EEIKKRMISSSALEKNFCETVSTLEHGNNK 275
             N    +  + +     K            + +   +    A E    E       G   
Sbjct: 586  VNERATELFQMDRERLLKKTVPDLHPPDVLDRVASALEQVEAGESVRLEIPIRRSDGTRL 645

Query: 276  SYKIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNL------TVAIAIFDQN 325
               I       G+      +  D+++     +QL  + E    L       + I +   +
Sbjct: 646  QTDISATPMQIGDRTLVQAVMRDITERKEAEEQLRRSEERWRRLVESNRDPIQITV---D 702

Query: 326  RYLQFHNRSFVELWEI--DLAFLATNPSN----DELLEFLRSANKLPEQLNWKTWKENIF 379
              +++ N +   ++        +  +P++     ++LE LR+ N+               
Sbjct: 703  GTIRYINPAGARIFGAEAPEEIIGRSPTDFAAKPDVLEKLRARNR-------------QL 749

Query: 380  SVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVK 434
            +  + +E  + T    +G+   V+  + P           +  ++T Q + E +   L  
Sbjct: 750  ARGEPTEPMEHTIQRLDGEERTVVSYAQPIEYKGESAAQTVIRDVTEQREAEEELRHLKD 809

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP------GTHIRNIAATCS 488
               + ++ +   +A+FGP+GR +   P   S  +  E+ +             ++ A   
Sbjct: 810  FYEQVLNAMPIDLAIFGPEGRYEYVTPGAISDPERREHVIGMTDVEYARVRGNDVDAARR 869

Query: 489  RY--YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            R                  + +D   + Q  +  ++  V + +++ +      +T     
Sbjct: 870  RLETIRRVARTRETEQFEETIEDHNGNPQHFIRFVTPVVQDGAVVNVLGYGLEIT----- 924

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
               + E  L +  E    +   K  F+  +S+E+R+PL  ++G   LL  +    L   Q
Sbjct: 925  QRKQTEMKLRDAKEQAEASLAAKERFLATMSHEVRTPLNAVLGMAQLLART---DLTEDQ 981

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y++ I  S   LL L++ +LD A ++AG + L         L + V+  + +K  E++
Sbjct: 982  RSYLQSIRFSGNTLLTLLDTVLDFAKLEAGEVDLEQVAFDPVRLAHHVRDMLRSKAKESD 1041

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----------R 714
            +  ++ +D +L +  V D  R+ QI + + SNA+ F+  GS VI                
Sbjct: 1042 LDFRIEADPQLPTSVVGDAARVGQILTNLGSNALKFTDDGSVVICVEEGPASAAPAEDSE 1101

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA------HRGQRRGVGLGLSIVESFINLH 768
                  F V++ G  IP +    +F  F           +  R G GLGL+IV++ ++  
Sbjct: 1102 APTWITFRVEDTGIGIPPEQRDRIFGHFNQADTDTGETRKETREGTGLGLAIVQTLVDQM 1161

Query: 769  GGHVSISSSDEGVTTINCRIP 789
            GG + + S+    +    R+P
Sbjct: 1162 GGTIDLESTPGEGSVFTVRLP 1182



 Score = 94.2 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 19/243 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSND 353
           V  E  +    +    ++ NL  A+ + +++R L   N++F +L+EI             
Sbjct: 172 VRTEEALRRSRSQLSALIQNLQDAVLLENEDRELLLANQAFCDLFEIPKPPEALPGADCG 231

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRG-- 410
            + E        P         + + S+  + E    +T HL +G+ L            
Sbjct: 232 AVAEAAEDLFADP-----TALSDRVESILTAGEPVSAETLHLNDGRILERDYVPIDLDDE 286

Query: 411 --GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP------- 461
             G +W + ++T Q  L+ +     +     ++  S+ +     DG     NP       
Sbjct: 287 TTGHLWKYRDVTEQRRLDARLQERERAYRRLVESASDIIYRCDRDGCFTYVNPVATEVTG 346

Query: 462 -AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A   L       L    H   +        NE          I + + +++ +   ++L
Sbjct: 347 YAHDELVGQHFTALVHPDHRERLVHFYENQINEEIPDTRREFPIVTAEGDKRWVSQQVQL 406

Query: 521 LSD 523
           + +
Sbjct: 407 VRE 409



 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 70/560 (12%), Positives = 160/560 (28%), Gaps = 71/560 (12%)

Query: 48  RNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQ 107
           R    + +  + S LS +   L     L  E+  L +      +  EI         +P 
Sbjct: 171 RVRTEEALRRSRSQLSALIQNLQDAVLLENEDRELLLANQAFCDLFEI---PKPPEALPG 227

Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFD-LVAETQNDCAIKIEGRVSG----- 161
            D   ++      F     LS   E +   G+          +   ++ +          
Sbjct: 228 ADCGAVAEAAEDLFADPTALSDRVESILTAGEPVSAETLHLNDGRILERDYVPIDLDDET 287

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI- 220
           +    +   +       A    + +        ++ L +S   +++  D+ G   + N  
Sbjct: 288 TGHLWKYRDVTEQRRLDARLQERER-------AYRRLVESASDIIYRCDRDGCFTYVNPV 340

Query: 221 -------SYKKNTETE--GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
                  ++ +        +V           ++ +I + +  +        E       
Sbjct: 341 ATEVTGYAHDELVGQHFTALVHPDHRERLVHFYENQINEEIPDTR------REFPIVTAE 394

Query: 272 GNNKSYK-----IVRVLNSFGEAGIAIDVSKE----ITVNDQLTHTYEILHNLTVAIAIF 322
           G+ +        +       G   IA D+++       + +       +    +  + + 
Sbjct: 395 GDKRWVSQQVQLVREDGAVVGVQAIARDITERKRAVEALQESEARFRIMFERHSAPMLLI 454

Query: 323 DQN-RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           D     ++  N S  E +             DE  E L   +      +    +      
Sbjct: 455 DPESGAIRDANASAAEFYGYT----------DEEWERLHVQDLNDLPADEVAARRADAEG 504

Query: 382 YKSSETHKDTWHLPNG--QTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQ 436
            + +        L +G  +T+ V  T     GT  +F    ++T + +   K     +  
Sbjct: 505 GEQNR-FIFPHRLKSGEARTVEVRSTPIEVNGTALLFSIIHDITAREEAREKLRRSRRKF 563

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               +   + + +  P+G I   N     L++ +  RL        +  T    +     
Sbjct: 564 KTLFETSHDAIFLIDPEGHILDVNERATELFQMDRERL--------LKKTVPDLHPPDVL 615

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVL--EYSIIPLPNAQ---TMLTFVNVTDSVRA 551
             + +A+      E   L+  +     + L  + S  P+             ++T+   A
Sbjct: 616 DRVASALEQVEAGESVRLEIPIRRSDGTRLQTDISATPMQIGDRTLVQAVMRDITERKEA 675

Query: 552 ERALTEKNEALRKADEIKNS 571
           E  L    E  R+  E    
Sbjct: 676 EEQLRRSEERWRRLVESNRD 695



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLS 475
           E +  +V  E             I +L + V +   D  + L+N AF  L++        
Sbjct: 166 EEVERRVRTEEALRRSRSQLSALIQNLQDAVLLENEDRELLLANQAFCDLFEIPKPPEAL 225

Query: 476 PGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL- 533
           PG     +A      + +     D   +I+T+ +        TL L    +LE   +P+ 
Sbjct: 226 PGADCGAVAEAAEDLFADPTALSDRVESILTAGEP---VSAETLHLNDGRILERDYVPID 282

Query: 534 ---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                   +  + +VT+  R +  L E+  A R+  E  +  +  
Sbjct: 283 LDDETTGHLWKYRDVTEQRRLDARLQERERAYRRLVESASDIIYR 327


>gi|260597946|ref|YP_003210517.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032]
 gi|260217123|emb|CBA30915.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032]
          Length = 877

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 208/478 (43%), Gaps = 15/478 (3%)

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           +D++  L   N      +      L    +   L     +     +  +  T   ++ + 
Sbjct: 3   YDKDERLVAWNAQVSRFYPGIGPHLVPGAALSALAVEFINTGFQTDSRSRDTLIASLLAN 62

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
            +    H +   L + + L +       GG I +  ++T    +++    L        +
Sbjct: 63  CRHDG-HCEVRQL-HERRLFIQHQRTADGGIISLHTDITALDTVQSTRQLLHDDFLLAAE 120

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLF 500
            +  G+  +     +   N AF +L      +L   +  + ++     R   ++      
Sbjct: 121 SIHIGIWDWQVTTDVLHLNDAFLNLLGEPRGQLQHTSRFLLSLIHPEDRDLLKNAMQRAS 180

Query: 501 AAIITSFDDERKSLQGTLE----LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
              +  F+ E +    + +    LLS  ++  ++      + + T  ++T    AE    
Sbjct: 181 EHQMPVFECEIRVQHRSGKWLWMLLSGQIIALTVTG-EIERLIGTLQDITRRKEAELISR 239

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +   A R A+E K++F+ ++S+E+R+P+  I+G T L   ++   LN +Q +Y+  + +S
Sbjct: 240 DAANAARAANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTE---LNGEQREYLSLVMSS 296

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL++++DILD + ++AG + L+   + L   +  + + +     E  I + V  D +
Sbjct: 297 AQSLLHIIDDILDFSKIEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDER 356

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDM 734
           +   +  D  RL Q+ + +LSNA+ F+ +G  ++ +  A  +G++ F V+++G  IP + 
Sbjct: 357 VPEMMRVDVVRLRQVLTNLLSNALKFTPQGEILLAVAPAAQDGEWRFRVRDSGIGIPPEK 416

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F  F        RR  G GLGL+I    + + GG ++++S     +  +  +P 
Sbjct: 417 QQVIFEAFSQADTSTTRRYGGTGLGLTISARLVAMMGGQLTVASEANQGSEFSFTLPL 474



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 14/164 (8%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVN--DQLTHTYEIL--HNLTVAIAIFDQNRYL 328
             + +   +     G   +  D++   TV    QL H   +L   ++ + I  +     +
Sbjct: 76  ERRLFIQHQRTADGGIISLHTDITALDTVQSTRQLLHDDFLLAAESIHIGIWDWQVTTDV 135

Query: 329 QFHNRSFVELWEIDLAFLATNPS------NDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
              N +F+ L       L           + E  + L++A +   +     ++  I   +
Sbjct: 136 LHLNDAFLNLLGEPRGQLQHTSRFLLSLIHPEDRDLLKNAMQRASEHQMPVFECEIRVQH 195

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
           +S    K  W L +GQ + + VT       I   +++T + + E
Sbjct: 196 RSG---KWLWMLLSGQIIALTVTGEIE-RLIGTLQDITRRKEAE 235


>gi|17227924|ref|NP_484472.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17129773|dbj|BAB72386.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 637

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 110/484 (22%), Positives = 192/484 (39%), Gaps = 21/484 (4%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            + I   +    +  +N+ F E+W++    + +         F     K PE  N   W 
Sbjct: 166 AIGIVAINFEGDILNYNQKFAEMWKLPQQLILSKKC-PRCKAFFEGQMKDPETFNRLIWA 224

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNT 431
            +  S  +S     D   L +G+           G    G +W   ++T     E     
Sbjct: 225 VSSTSNIES----YDVLELKDGRVFAHYSQPQWLGQKIIGRVWSIWDITESKQTEEALR- 279

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS--- 488
           L + +   +   S+       D +    NPA   L       L  G  IR +        
Sbjct: 280 LNEARFRALAETSDASTFLVQDTQFCYVNPAVEVLTGYTRTELLNGFDIRRLIKYRKGRQ 339

Query: 489 -RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R    +  ++     I + +   + L   + +L DS +++    +     M+T +++TD
Sbjct: 340 IRNSATATNFEYQEISILTKNGAERWLSCAVTIL-DSTIDFQGKSVE----MITAIDITD 394

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +AE  LT+  E  +   E++ SF+  V ++ R+PL  +     LLK            
Sbjct: 395 YKQAESELTQALEQAKHLGELRASFLSMVCHQFRNPLNIVSFSNSLLKRYLNAQTEETIQ 454

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ +  S   L  +++D+L  A  +A  +K   S   + +  N+V   +    H  N 
Sbjct: 455 PLLDQVQLSIQQLNQMLDDMLLFAKTEAAKLKFEPSRFEIVEFCNDVISQMQ-MAHFPNY 513

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            I  IS  +  +   D+  L  I   ++ NA+ +S  GS V L+   +N   IF VK++G
Sbjct: 514 -INFISQTEYLTVWMDKNILDSILKNLIDNAIKYSPLGSMVELRLLGNNEKIIFQVKDDG 572

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I     K +F  F    +     G GLGLSIV++ ++LHGG V++ S     TT    
Sbjct: 573 IGISTLDQKRLFEPFYRGKNVDNIPGTGLGLSIVKTLVDLHGGQVAVESKVGVGTTFTVV 632

Query: 788 IPSK 791
           +P K
Sbjct: 633 LPHK 636


>gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 589

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q++      N   +     +  +++GV     DG I ++NP
Sbjct: 221 ILTQDEIGELATAFNQMGRQLNFHINALNQEKEQLSNILSSMADGVITINIDGTILVTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +      +            +  +LF   +++  ++ + ++ TL+  
Sbjct: 281 PAERFLQAWYYEQNMNIKEGDNLP--------PEAKELFQNAVST--EKEQMIEMTLQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S  +L   + PL     +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 SWVLL---MSPLYAESHVRGAVAVLRDMTEERRL----------DKLREDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +    + S    + +  + I   S  +  LVND+LDLA +++G   L+
Sbjct: 378 TPISMLQGYSEAIVDD-IASSEEDRKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLH 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y  I +N+ L ++ +  +    E NI +          F+ D  ++ Q+F+ ++ NA+  
Sbjct: 437 YEKINVNEFLEKIIRKFSGVAKEKNIALHHDISLTEEEFMFDEDKMEQVFTNLIDNALRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +S G +V +            +K++GS IPE+    +F RF        R   G GLGL+
Sbjct: 497 TSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV++ +  H G +++ S  +  TT    IP+K
Sbjct: 557 IVKNIVEAHNGSITVHSRIDKGTTFTFYIPTK 588


>gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 989

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/650 (18%), Positives = 236/650 (36%), Gaps = 64/650 (9%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRK 242
             ++L      + +   S+   V   D  G + + N + +  T  +      + + E  +
Sbjct: 129 AERRLRESEQRYAITLSSIGDGVLSTDADGFVTFVNPAGEALTGWSRSEATGRRLREVFR 188

Query: 243 LFKEEIK-------KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEA 289
           L  E  +         ++ S++        +  +  G++   +      +       G  
Sbjct: 189 LHDEHTRVLIDDPTAAVMQSASDGGLPARAILRVRDGSDLPVECTGTPMTDERGARQGIV 248

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELWEIDLA 344
            +  DV+++    +      E    L +A     + +++ +     + R F     I   
Sbjct: 249 IVFRDVTQKRRAQEA-EILRETNARLEMAMYGSNVGVWEIDMPEGDYKRGFARYSNI-YE 306

Query: 345 FLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           +L  +  +  L      +   P+  +       +           ++     +G    V+
Sbjct: 307 WLGFDTPHARLDYEAYMSVLHPDHRDSTDRAVASFLESGDGVFELENRLRHRDGTDRWVL 366

Query: 404 VTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           V    R          +    ++T     E       +    T ++ + GVA    DG  
Sbjct: 367 VRGTARRDATGKPVRFVGSLVDITQLKVTEQALRASEERFRGTFENAAVGVAHCDLDGCF 426

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N     +       L              R  +E    D  AA I  F   R   +G
Sbjct: 427 LRVNHRSGEIVGWPRGALQ------------QRRLHELIHHDFIAASIDRF---RLLTEG 471

Query: 517 TLELLSDSV-------------LEYSIIPLPNAQTMLTFVNVTD---SVRAERALTEKNE 560
            LE  S+ V             L  ++    + QT    V + D       E  +    E
Sbjct: 472 KLEHYSEEVPLVRVDGSRVWVTLSVALQHDASGQTSHVIVIIQDISARKALEDTVRVAKE 531

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A   A+  K+ F+ ++S+ELR+PL  I+G+  +L+      L+++Q   V  I  S   L
Sbjct: 532 AAEAANRAKDQFLANISHELRTPLNGILGYAQMLQRDAR--LDARQLASVGVIEQSGQHL 589

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+NDILD A + AG ++L    + L   L  + + +A +  +  + +  ++   L + 
Sbjct: 590 LTLINDILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAV 649

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           V  D +RL Q+   +L+NA+ F+ +G   +  +    G   F V++ G  +  D  +++F
Sbjct: 650 VRVDERRLRQVLLNLLANAVKFTDRGEVTLSVSRGAAGRVRFEVRDTGIGVSADRLEAIF 709

Query: 740 NRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F     H  +  G GLGL+I    + + GG + ++SS    +     +
Sbjct: 710 QPFEQAGDHTRRSGGAGLGLAISRQLVRMMGGEIEVTSSAGEGSVFGFEL 759


>gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
 gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
          Length = 1594

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 114/672 (16%), Positives = 251/672 (37%), Gaps = 74/672 (11%)

Query: 172  DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
              +  E+A  T + ++        + +FD+        D  G I+  N S        G 
Sbjct: 542  TKLEQEIARRTEEVRESETR---LRTVFDTALDGTVVIDDKGIIIDVNRS---TELIFGR 595

Query: 232  VFQKAIGESRKLFK--------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
               + IGE+  +          +E  +  + +   +           H + + + I   +
Sbjct: 596  DRDELIGENVAILMPAKFANKHDEYIQTFMRTGDKKLIGQPRQVEGLHKSGRVFPIEVSV 655

Query: 284  NSFGE------AGIAIDVS--KEITVNDQLTH---------TYEILHNLTVAIAIFDQNR 326
                        G+  D++  +E    + L                    V I     + 
Sbjct: 656  GEAKVGDTQVFVGVVKDITVQEETKARETLLQNELFERELVYRAAFSQAAVGICRVALDG 715

Query: 327  YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSS 385
                 N    +++      L +        +        PE LN      +++    + S
Sbjct: 716  RFIEVNDKMCQIFGYSEEALLSMH----FGDVTH-----PEDLNESQQMVDDLIEGLQRS 766

Query: 386  ETHKDTWHLPNGQTLH----VIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGE 438
             T    +   +G T      V   +N        + + E++T + ++E +  +    +  
Sbjct: 767  FTMDKRYLNKSGDTFWATLSVSAVTNEEEQPKYFVAVVEDITKRKNIEKELRSAKTARDG 826

Query: 439  TIDHL-----SEGVAVFGPD---GRIKLSNPAF-----RSLWKTEENRLSPGTHIRNIAA 485
             +  +     + G+  +  +   G +K  +  +                    H  + + 
Sbjct: 827  LLRGMRLASDAGGICNWALNVDTGALKWDDSMYTLYGVERNKPLHYEDWERSLHPDDFSY 886

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                +    +  ++F A      +++ +    ++   D V +       +       +++
Sbjct: 887  ATKAFKESLESKEVFNAEFR-IINQKTNQTRWVKAAGDVVFD---KESGDKMVFGINLDI 942

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            TD   A+ AL  +  + ++A+E K+ F+  +S+E+R+P+  +IG  DLL+ +   +L+  
Sbjct: 943  TDEKDAQAALERETLSAKQANEAKSRFLATMSHEIRTPMNGVIGMVDLLRET---NLSRD 999

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q   V  I  SS  LL ++NDILD + +++G M+L+ + + + +L+ +   ++    H+ 
Sbjct: 1000 QVNMVSTIRDSSFSLLEIINDILDFSKIESGQMELDLTDVNILNLVEKTLDALWVNAHQK 1059

Query: 666  NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS---SKGSTVILKAARDNGDFIF 721
            ++ + +  +  L    + D  R  Q+   +L NA+ F+    +   V +      G+   
Sbjct: 1060 DVGLYLEVEDNLPESLLLDPVRTRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTEGELRI 1119

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            +V++NG  + +D  + +F  F        R   G GLGLSI +SF+ L GG + ++S   
Sbjct: 1120 AVEDNGVGMTQDQLERLFKPFTQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVTSKHH 1179

Query: 780  GVTTINCRIPSK 791
              +     IP +
Sbjct: 1180 HGSRFTFTIPVE 1191



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 22/165 (13%)

Query: 421 VQVDLET-KYNTLVKVQGETIDHLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSP 476
            Q+ +ET +  +++ +Q + ID  + G+ V     PD  I  +N AF          +  
Sbjct: 402 AQLSVETGEQRSMLDIQNKAIDSTTSGIVVSDATQPDLPIIFANKAFEMQTGYSRQEV-- 459

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS---IIPL 533
                 +   C    N+         +  +  ++            D  L Y+   I P+
Sbjct: 460 ------LGKNCRFLQNDDRDQKGIDQLRDAIANQTSCSVVIRNYRKDGTLFYNNLKIDPV 513

Query: 534 PNAQTMLTFV-------NVTDSVRAERALTEKNEALRKADEIKNS 571
            N Q  +T                AE     + E  R+ +E++ S
Sbjct: 514 FNEQGEMTHFIGIQTDVTEMKRREAENTTKLEQEIARRTEEVRES 558


>gi|302409538|ref|XP_003002603.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
 gi|261358636|gb|EEY21064.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
          Length = 1373

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/666 (15%), Positives = 226/666 (33%), Gaps = 89/666 (13%)

Query: 197  VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG----ESRKLFKEEIKKRM 252
             L D+    +    + G + + N + +     +G + +   G         + E   + +
Sbjct: 370  ALLDNTQMPILAMWKDGSVSFPNRAARDLLREDGDLEKSVDGFDLLPGWTCWDETFSREL 429

Query: 253  ISS-------SALEKNFCETVSTLEH--GNNKSYKI-----VRVLNSFGEAGIA--IDVS 296
              S          E  F      + +  G    + +        +     AG+    DV+
Sbjct: 430  DVSEYPISVLLQTETPFASMRVGMHNKAGEKLQFDVLGEAITDDITGEFLAGVVTFRDVT 489

Query: 297  KEIT-----VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
                        +      I   +   +          F N  +     +          
Sbjct: 490  SMAQEITDIKEREEERFKLICDTMPQLVWTATAEGMPDFFNTRWYTYTGLTPETSLGAAW 549

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR 409
                       + +     WK           + E +   +     +G    ++  + P+
Sbjct: 550  QTPF----HPDDLMETTARWK-------RSIATGEPYVTQYRCRSKDGDWRWMLGRALPQ 598

Query: 410  --------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
                            ++   ++         +     + H    +     D ++ +   
Sbjct: 599  KNRETGAIEKWFGTCTDVHESIEATLAAKRTRQQLLSVLAHAHVTIFTVDRDHKLTMLEG 658

Query: 462  AFRSL----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            A          T ++    G  + ++    +      +       I    D +++ L   
Sbjct: 659  ALIWDLNDGDPTRDSSWYIGEDMYDVFNRLNTQLAPGEEPKFLRPIEGILDGKQRELVEE 718

Query: 518  LELLSDSVLEYSIIPLPNAQTM------------------------LTFVNVTDSVRAER 553
               +         +P+P  +T                             N+ +  + ++
Sbjct: 719  -HGIDGRWYRTRFLPVPGKRTNGANGSLEACVEGAIGVVMDVTELKEKQTNLEEEFKEKK 777

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                   A ++A+ +K+ F+ ++S+E+R+P+T +IG  +LL+  K   L+S+Q +YVE I
Sbjct: 778  QAMANAAAAKEANRLKSQFLANMSHEIRTPITGVIGMAELLQDMK---LDSEQREYVENI 834

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S+  LL ++NDILD + V++G + +      L+ +L +V + ++      ++      
Sbjct: 835  QRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVVLKDVSKMLSFAAERKDLAFLSDV 894

Query: 674  DGKL---GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKN 725
              ++      + D  R+ QI + +L+N++ F+++G  V     ++          F++++
Sbjct: 895  SREITNDMVVIGDPGRVRQIVTNLLTNSIKFTNQGH-VKFSVKKEKETHDSVIIRFTIED 953

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  I E++ K +F  F        RR  G GLGL+I ++ + L  G +++ S     TT
Sbjct: 954  TGIGIEEEVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLELMRGKITLESDLGNGTT 1013

Query: 784  INCRIP 789
                IP
Sbjct: 1014 ATFWIP 1019



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 98/327 (29%), Gaps = 50/327 (15%)

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           FD++ E   D    I G        +    +  +  E+ +   +          FK++ D
Sbjct: 463 FDVLGEAITD---DITGEFLAG--VVTFRDVTSMAQEITDIKER------EEERFKLICD 511

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES---RKLFKEEIKKRMISSSA 257
           ++  LVW     G   + N  +   T         A  ++        E   +   S + 
Sbjct: 512 TMPQLVWTATAEGMPDFFNTRWYTYTGLTPETSLGAAWQTPFHPDDLMETTARWKRSIAT 571

Query: 258 LEKNFCETVSTLEHGNNKSY---KIVRVLNSFGEA----GIAIDVSKEIT----VNDQLT 306
            E    +     + G+ +      + +     G      G   DV + I           
Sbjct: 572 GEPYVTQYRCRSKDGDWRWMLGRALPQKNRETGAIEKWFGTCTDVHESIEATLAAKRTRQ 631

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFV-ELWEIDLAFLAT---NPSNDELLEFLRSA 362
               +L +  V I   D++  L     + + +L + D    ++        ++   L + 
Sbjct: 632 QLLSVLAHAHVTIFTVDRDHKLTMLEGALIWDLNDGDPTRDSSWYIGEDMYDVFNRLNTQ 691

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------------- 409
               E+  +    E I    K  E  ++  H  +G+         P              
Sbjct: 692 LAPGEEPKFLRPIEGILD-GKQRELVEE--HGIDGRWYRTRFLPVPGKRTNGANGSLEAC 748

Query: 410 -GGTIWMFENLTV----QVDLETKYNT 431
             G I +  ++T     Q +LE ++  
Sbjct: 749 VEGAIGVVMDVTELKEKQTNLEEEFKE 775


>gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 957

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 170/382 (44%), Gaps = 18/382 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           ++  E       +     +D+L  GVAV    PD R +  N  F   + T    ++    
Sbjct: 433 RIQAEKTLREREEFIRTVLDNLPVGVAVNTVSPDVRFEYMNELFPRFYGTTRESITAPEG 492

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQ 537
               A     +  +  G     A   S   ER        +  D    +    IPLP   
Sbjct: 493 FWEAAYPEPEFRGKIRGM--VTAGCASGSQERMCWADVPIMRQDETRFVTARNIPLPGTN 550

Query: 538 TML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            M+ T  +VT+  +AE+A+    +A   A + KN F+ ++S+ELR+PL  ++    LL+ 
Sbjct: 551 LMISTVWDVTERKQAEQAMARAKDAAESASQAKNEFLANMSHELRTPLNGVMAMMQLLEM 610

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q++YV     SS  L  L++D+LD++ ++AG +++      + +LL  V +
Sbjct: 611 T---PLNGEQTEYVHLARKSSERLTRLLSDLLDISRIEAGKVEIREEAFAVQELLQSVSE 667

Query: 657 SIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAAR 714
              T      + +++ +D         D  RL Q+   ++ NA+ F+ +G   V L A  
Sbjct: 668 LFNTSAQSKGVSLELSTDPSVPPRLKGDAARLRQVLFNLVGNALKFTDQGFVRVELTALP 727

Query: 715 DNG----DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLH 768
             G      +FSV + G  IP +    +F  F     A+  + +G GLGL+IV   + L 
Sbjct: 728 PRGLEQCRILFSVMDTGIGIPSEKQHDLFTPFFQVEGAYTRRYQGAGLGLAIVRRLVELM 787

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GGH+++ S     T ++  +P 
Sbjct: 788 GGHITLDSIFGEGTEVHVALPL 809



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 21/242 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +  E T+ ++      +L NL V +A+     +   ++ N  F   +      +      
Sbjct: 434 IQAEKTLREREEFIRTVLDNLPVGVAVNTVSPDVRFEYMNELFPRFYGTTRESITA---P 490

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH----LPNGQTLHVIVTSNP 408
           +   E        PE       +  + +   S    +  W     +   +T  V   + P
Sbjct: 491 EGFWEAA-----YPEPEFRGKIRGMVTAGCASGSQERMCWADVPIMRQDETRFVTARNIP 545

Query: 409 RGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI----KLSNP 461
             GT   I    ++T +   E                 +E +A    + R      ++  
Sbjct: 546 LPGTNLMISTVWDVTERKQAEQAMARAKDAAESASQAKNEFLANMSHELRTPLNGVMAMM 605

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               +      +       R  +   +R  ++        A      +E  ++Q  L+ +
Sbjct: 606 QLLEMTPLNGEQTEYVHLARKSSERLTRLLSDLLDISRIEAGKVEIREEAFAVQELLQSV 665

Query: 522 SD 523
           S+
Sbjct: 666 SE 667


>gi|189426004|ref|YP_001953181.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422263|gb|ACD96661.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1127

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/538 (18%), Positives = 196/538 (36%), Gaps = 61/538 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E +V D      ++  NL +     + N  + + N   +++       L      D   
Sbjct: 233 AESSVKDSEARLKDVFDNLPMLTVCLEPNGAISYCNDYLLQITGYRRHELIGKNWFDL-- 290

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN--------P 408
            F+     L +  N    K  I   Y++S        L     + ++  SN         
Sbjct: 291 -FIAEPEPLKQVFNQMVTKGEIVHHYQNS-------ILTKSGVVRMVAWSNTLNHDNSGA 342

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             G   +  ++T Q   E       ++    +D   E + +   +  + ++N  F     
Sbjct: 343 ISGVTSIGSDITAQHAAEQALEQSQRILRSLVDGNPESLYLVDRNATVLIANSTFARRLN 402

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-----LSD 523
              ++++  +         ++           +     F+D +   Q    L     L  
Sbjct: 403 KGLSQVTGSSLDELFNPDVAQRRRARIEEVFSSGRPLIFNDAQDLWQFEHHLNPVSTLDG 462

Query: 524 SVLEYSIIPLPNAQTMLTFVNVT----------------------DSVRAERALTEKNEA 561
            V   SI+ +     +    N+                       +  R    L    + 
Sbjct: 463 GVESVSILTIDVTDRLRNEENLQQANQLLKQNNEALEQRVAERTSELTRLNEELARARDT 522

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A   K+ F+ ++S+E+R+P+  I+G   L   +    L+ KQ +Y++ +S S+  LL
Sbjct: 523 AEGASRSKSEFLANMSHEIRTPMNAILGLVHLALQT---DLSHKQREYLDTVSNSAQSLL 579

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++NDILD++ ++AG +++  +   L  ++      ++ K  E  I ++   D  +  + 
Sbjct: 580 GIINDILDVSKIEAGRLQIEKTNFSLEGVVTRTLALLSIKAREKGINLEQQVDTSIPDAL 639

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---------DNGDFIFSVKNNGSSIP 731
           V D  RL Q+   +L NA+ F+  G TV L+  R         D      S+ + G+ + 
Sbjct: 640 VGDPLRLEQVLVNLLGNAVKFTDSG-TVTLQIRRGTEPRDSDSDEITLEISITDTGAGMD 698

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           E     +F  F        R   G GLGL+I    + + GG ++++SS    +     
Sbjct: 699 EQTLGRLFKPFSQGDTSTTRTHGGTGLGLTICRHLVEMMGGTITVTSSPGQGSCFTFS 756



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 154/449 (34%), Gaps = 62/449 (13%)

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           L++   +L+       + A T+ D + +I G+  G    L           +        
Sbjct: 185 LARPLTQLKD-----AVAAVTRGDLSYRISGQPPGELGLL----ASSFNKMIEARQRAES 235

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFK 245
            + +  +  K +FD+L  L    +  G I + N       +  G    + IG++   LF 
Sbjct: 236 SVKDSEARLKDVFDNLPMLTVCLEPNGAISYCN---DYLLQITGYRRHELIGKNWFDLFI 292

Query: 246 EEIKK------RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAI 293
            E +       +M++   +  ++  ++ T + G  +       LN        G   I  
Sbjct: 293 AEPEPLKQVFNQMVTKGEIVHHYQNSILT-KSGVVRMVAWSNTLNHDNSGAISGVTSIGS 351

Query: 294 DVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D++ +      L  +  IL +L      ++ + D+N  +   N +F       L+ + T 
Sbjct: 352 DITAQHAAEQALEQSQRILRSLVDGNPESLYLVDRNATVLIANSTFARRLNKGLSQV-TG 410

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-----HKDTWHLPNGQTLHVIV 404
            S DEL          P+    +  +  I  V+ S         +D W   +    H+  
Sbjct: 411 SSLDELFN--------PDVAQRR--RARIEEVFSSGRPLIFNDAQDLWQFEH----HLNP 456

Query: 405 TSNPRGGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-----VFGPDGR 455
            S   GG     I    ++T ++  E       ++  +  + L + VA     +   +  
Sbjct: 457 VSTLDGGVESVSILTI-DVTDRLRNEENLQQANQLLKQNNEALEQRVAERTSELTRLNEE 515

Query: 456 IKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +  +        +++   L+  +H IR          + +   DL        D    S 
Sbjct: 516 LARARDTAEGASRSKSEFLANMSHEIRTPMNAILGLVHLALQTDLSHKQREYLDTVSNSA 575

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           Q  L +++D +L+ S I     Q   T  
Sbjct: 576 QSLLGIIND-ILDVSKIEAGRLQIEKTNF 603


>gi|312113732|ref|YP_004011328.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218861|gb|ADP70229.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
          Length = 630

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 109/427 (25%), Positives = 185/427 (43%), Gaps = 39/427 (9%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV--QGETIDHLSEGVAVFGPDGRIK 457
           L   ++S P+G     FE L V +D       L       E ++ L   +A++  + R+ 
Sbjct: 199 LRGEISSTPQGAPA--FEGLLVPIDPSQSPQGLEGFPSLPEIVESLPISIAIWDRENRLV 256

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQG 516
           L N  FR L++       PGT    I A       +         ++  F   ER+   G
Sbjct: 257 LCNRKFRQLYRVSAAAALPGTSYEAIQAQTQEAIAQRPPEG--RGVVGRFQLQERQLGDG 314

Query: 517 TLELLSDSVL----------------EYSIIPLPNAQTMLTFVNVTDSVRAE-----RAL 555
           T   + +                   +     L   Q M   V+  +  R +     R L
Sbjct: 315 TWLQIGEYWTGEGTLVSFGTDITMQKQTQHRVLEREQQMRARVDGFEQSRRQLEIQARQL 374

Query: 556 TEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQS 607
            E  E+  +        ++ K+ F+ +VS+ELR+PL  IIGF+++++   LG + N K  
Sbjct: 375 RELAESYNEEKIRAEAANQAKSEFLANVSHELRTPLNAIIGFSEMMRDGVLGPIGNPKYE 434

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            YV+ I  S   LL ++NDILD++ ++AG   L+     ++D+  E    ++    E N+
Sbjct: 435 SYVKDIHNSGRYLLEMINDILDMSKIEAGRWTLSPEWFTMSDVFQECLSVVSPVAMEGNV 494

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +   S     S   DR+ L Q+   +LSNA+ F+ +   V L+A R  G    ++ + G
Sbjct: 495 ELS-QSGNTSISLYGDRRALKQVLINLLSNAVKFTPQDGKVSLRAYRYRGSIRIAIADTG 553

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP+     +   F   ++      +G GLGL+I  S + +HGG + I S     TT+ 
Sbjct: 554 VGIPKHDLGRLGRPFEQVSNQLTKGHKGTGLGLAISRSLVEMHGGKLDIKSRVGEGTTVT 613

Query: 786 CRIPSKE 792
           C +P ++
Sbjct: 614 CILPVQD 620



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 14/151 (9%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ID S+     +      EI+ +L ++IAI+D+   L   NR F +L+ +  A      S 
Sbjct: 220 IDPSQSPQGLEGFPSLPEIVESLPISIAIWDRENRLVLCNRKFRQLYRVSAAAALPGTSY 279

Query: 353 DELLEFLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +    +   A + PE          +   ++  E       L +G  L +       G
Sbjct: 280 EAIQAQTQEAIAQRPPEGR-------GVVGRFQLQERQ-----LGDGTWLQIGEYWTGEG 327

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
             +    ++T+Q   + +     +     +D
Sbjct: 328 TLVSFGTDITMQKQTQHRVLEREQQMRARVD 358


>gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
 gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
          Length = 819

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 180/378 (47%), Gaps = 14/378 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
               + +      +    + + + +G AVF    R+ L+NPA+ S++   E+ ++PG   
Sbjct: 62  ENFQVRSDLRRAEQRLWTSFETIEDGFAVFDASRRLVLANPAYVSIFDGLED-VAPGIGY 120

Query: 481 RNIAATCSRYY---NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +   C+       E      + A +    +  +     + L +   ++       +  
Sbjct: 121 AELLRLCAEEGIIDTEGLSRQDWCAQMEMRWNGAQIEPAVVRLWNGFSIKLVERRGEDGD 180

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +N+TD+++ E+ LT        A+  K++F+ ++S+ELR+P+  ++  ++LL  S
Sbjct: 181 IVSLCLNITDTIKREQELTLARTRAEAANRAKSAFLANMSHELRTPMNGVVAMSELLNES 240

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L+ +Q+ YVE I  S   LL ++ND+LD + ++A  ++L+ +   L  L+++V   
Sbjct: 241 ---ALDEEQALYVETIRKSGEALLVIINDVLDYSKMEAEKLQLHPAPFDLERLMHDVVML 297

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAAR 714
                 E ++ + +  D  L   F+ D+ RL Q+ + +L NA+ F+ +G  +I  +    
Sbjct: 298 TKPTAQEKSVDLMLDYDIFLPSHFIGDQGRLRQVMTNLLGNAVKFTLEGHVLIRVIGMPP 357

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
           ++G  + I S+++ G  I  +M   +F  F        R   G GLGL+I +  I+L GG
Sbjct: 358 EDGTQEIIVSIEDTGIGIAPEMIDHIFGEFNQAEDERNRAFEGTGLGLAITKQLIDLMGG 417

Query: 771 HVSISSSDEGVTTINCRI 788
            + + S     +  + RI
Sbjct: 418 EIWVDSEIGEGSCFSFRI 435



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 75/212 (35%), Gaps = 10/212 (4%)

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI---- 299
              E + R+ +   L +   E  +  +  +  ++ +   +     A  A ++  E     
Sbjct: 10  LAAERRARLTAERLLAQKQEELYAANQKLSRHAFTLSDQIVEQRHA--AEELKDENFQVR 67

Query: 300 -TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +       +     +    A+FD +R L   N ++V +++  L  +A      ELL  
Sbjct: 68  SDLRRAEQRLWTSFETIEDGFAVFDASRRLVLANPAYVSIFD-GLEDVAPGIGYAELLRL 126

Query: 359 LRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                 +  E L+ + W   +   +  ++       L NG ++ ++      G  + +  
Sbjct: 127 CAEEGIIDTEGLSRQDWCAQMEMRWNGAQIEPAVVRLWNGFSIKLVERRGEDGDIVSLCL 186

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           N+T  +  E +  TL + + E  +        
Sbjct: 187 NITDTIKREQEL-TLARTRAEAANRAKSAFLA 217


>gi|311069406|ref|YP_003974329.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869923|gb|ADP33398.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 578

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 148/371 (39%), Gaps = 27/371 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++              I+++  G+ +    G I L N A+   + T+ N L        
Sbjct: 225 MEMTRTQEMQRDRLLTVIENIGSGLILIDGRGFINLVNRAYAKQFHTQPNHL-------- 276

Query: 483 IAATCSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                 R Y+++   +    ++      + ++  L      +     E   +P+      
Sbjct: 277 ----LRRLYHDAFEHEEIIQLVEEIFMTETKKCKLFRLPINIERRYFEVDGVPI------ 326

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +   D  +    +       +K ++++  FV +VS+EL++P+T+I GFT+ L    L
Sbjct: 327 ---MGPDDEWKGIVLVFHDMTETKKLEQMRKDFVANVSHELKTPITSIKGFTETLLDGAL 383

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                   +++  I   S  L +LV D+LDL+ ++     L+  T     +L E++  + 
Sbjct: 384 DD-REALLEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSVETFDAAKMLGEIETLLQ 442

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E +IR ++           D  RL Q+F  + +NA+ ++ +  TV + A     D 
Sbjct: 443 HKASEKDIRFELNIPKDPLYVQGDVYRLKQVFLNLANNALTYTPEHGTVTISAKLAEEDI 502

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I ++    +F RF            G GLGL+IV+  I  H G + + S 
Sbjct: 503 QIEVADTGIGIEKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVKSE 562

Query: 778 DEGVTTINCRI 788
               T     +
Sbjct: 563 QGQGTIFIVAL 573



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 14/137 (10%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +    T   Q      ++ N+   + + D   ++   NR++ + +      L     +D 
Sbjct: 225 MEMTRTQEMQRDRLLTVIENIGSGLILIDGRGFINLVNRAYAKQFHTQPNHLLRRLYHDA 284

Query: 355 L----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
                +  L     + E    K ++  I    +  E        P+ +            
Sbjct: 285 FEHEEIIQLVEEIFMTETKKCKLFRLPINIERRYFEVDGVPIMGPDDEWK---------- 334

Query: 411 GTIWMFENLTVQVDLET 427
           G + +F ++T    LE 
Sbjct: 335 GIVLVFHDMTETKKLEQ 351


>gi|115523225|ref|YP_780136.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115517172|gb|ABJ05156.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 1039

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 199/496 (40%), Gaps = 58/496 (11%)

Query: 341 IDLAFLATNP--SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG- 397
            ++A LA  P  S D+ L  +      PE L     +  +     +   H+  W  P+G 
Sbjct: 382 FEIAGLAPRPGVSLDQFLALIH-----PEDLQVFLHELELSRSGDTKLIHELRWVRPDGA 436

Query: 398 -QTLHVIVTSNPR-----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            + + +             G   + +++T +   E        +  + I+ +S+G  ++ 
Sbjct: 437 IRWIRMEADRRRDANGDPVGVFGIVQDITERKRAEAAAEASRHLLVDAIESMSQGFVLYD 496

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA---------------ATCSRYYNESDG 496
              R  L+N  F+ ++    +R+ PG    ++                A+   +   +  
Sbjct: 497 KHDRFVLANSHFKEMFPELADRMKPGMRYEDVLCAVHQSDLVDAPKAGASFDEWLARTTA 556

Query: 497 WDLFA--AIITSFDDER-------KSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVN 544
           W   A   I   +D+ R       ++  G +  L   + ++  I     Q    +    N
Sbjct: 557 WHRAANRPIERRYDNGRWIRLVDHRTSDGGIAGLRTDITDFKTIEAALEQKVADLELARN 616

Query: 545 VTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
             +S + E       L    E    A   K+ F+  +S+E+R+P++ ++G  DLL+ +  
Sbjct: 617 NLESQKQELVAKSADLELAKETAEAASRAKSDFLAIMSHEIRTPMSGMVGMIDLLRET-- 674

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L ++Q  Y E    S   LL + NDILD + ++AG +K       +   +      + 
Sbjct: 675 -PLTAEQKGYAEIAKESVNSLLGVTNDILDFSKLEAGELKAEAIDFDIEHTIGGAISLMK 733

Query: 660 TKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---- 714
            K     + I+ V++ G     V D  R+ QI   +++NA+ F+ +G+ + +KA+     
Sbjct: 734 AKAQAKQLDIRTVLTPGLPKWLVGDPSRIRQILLNLINNAIKFTEQGA-ISVKASYHSLD 792

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
            D  +    + + G  IP ++ + +FN FV        +  G GLGL+I +    + GG 
Sbjct: 793 DDKIELRIEIVDTGIGIPMEVQQRLFNPFVQADTSISRKYGGTGLGLAICKQLALMMGGE 852

Query: 772 VSISSSDEGVTTINCR 787
           + + S  E  +T    
Sbjct: 853 IGVRSGPEPGSTFWFT 868



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 100/316 (31%), Gaps = 28/316 (8%)

Query: 151 CAIKIEGRVSGSCAFLRI--LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
            A    G V+G    L +    +            +  + +    +            W 
Sbjct: 308 EAFGALGAVAGVLLLLSVLTRQIGKGRRSALLLARQNARFARSRQMLLDAQRIGKLGHWM 367

Query: 209 RDQAGD-ILWANISYKKNTETEGIVFQKAIGES-------RKLFKEEIKKRMISSSALEK 260
            + AGD  +W+     +  E  G+  +  +           +  +  + +  +S S   K
Sbjct: 368 TNAAGDSAVWS----PQLFEIAGLAPRPGVSLDQFLALIHPEDLQVFLHELELSRSGDTK 423

Query: 261 NFCETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEIL-- 312
              E       G  +  ++          +  G  GI  D+++          +  +L  
Sbjct: 424 LIHELRWVRPDGAIRWIRMEADRRRDANGDPVGVFGIVQDITERKRAEAAAEASRHLLVD 483

Query: 313 --HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL- 369
              +++    ++D++      N  F E++      +      +++L  +  ++ +     
Sbjct: 484 AIESMSQGFVLYDKHDRFVLANSHFKEMFPELADRMKPGMRYEDVLCAVHQSDLVDAPKA 543

Query: 370 --NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
             ++  W     + ++++    +  +  NG+ + ++      GG   +  ++T    +E 
Sbjct: 544 GASFDEWLARTTAWHRAANRPIERRYD-NGRWIRLVDHRTSDGGIAGLRTDITDFKTIEA 602

Query: 428 KYNTLVKVQGETIDHL 443
                V       ++L
Sbjct: 603 ALEQKVADLELARNNL 618


>gi|224826722|ref|ZP_03699822.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
 gi|224600942|gb|EEG07125.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
          Length = 1418

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 108/511 (21%), Positives = 191/511 (37%), Gaps = 29/511 (5%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
            E  +   L     +     V +   D++  +   N +  +L+      L      + + +
Sbjct: 632  EQRLRAVLQEEEAVYAASPVGLLRIDEDFRILRANHAAEQLFGTARGGLLPLHLFELVAD 691

Query: 358  FLRSANKLPEQLNWKTWKENIFSVYKSSETHKD----TWHLPNGQTLHVIVTSNPRGGTI 413
                   +P        +E    V   +E  +      W L  GQ LH       +GG I
Sbjct: 692  ---QQIWIPLGQALCRAREQGDRVQYEAECLRSNGMPVWVLIEGQALHGESV---QGGMI 745

Query: 414  WMFENLTVQVDLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                ++T +   E           E        I+ +SE   ++GP  ++ L N  F  L
Sbjct: 746  LACLDITERKLAEFALQQARDEAAESRHQLLGAIESISEAFVLYGPHDQLLLCNQRFADL 805

Query: 467  --WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
                   + L   +    + A   R      G+D    +       R+        L ++
Sbjct: 806  VSEGQSSDALLGISFEDTVRALLQRGERPEPGFDAVQWLAERVHRHRQGASSFSLQLGEA 865

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              + +   +P   T+  + N+T   + E  L E       A+  K++F+  +S+E+R+P+
Sbjct: 866  WWQINERQIPGRGTVGVWANITALKQQEAELIEACRQADSANHAKSAFLAAMSHEIRTPM 925

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              ++G  +LL    L  L+ +Q   V+ I  S+  LL L++DILD + ++AG + L    
Sbjct: 926  NGVLGMVELLA---LTPLDPEQHDAVDTIQESAKTLLRLIDDILDFSKIEAGRLDLAPEA 982

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ +V            +      D ++    + D  RL QI    +SNA+ F+ 
Sbjct: 983  TSVAGIVAQVHGLYLENARRKGLWFTTWVDERVAPCLLLDSLRLRQILQNFVSNALKFTQ 1042

Query: 704  KGST---VILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            +GS    V L A  +      F V + G  +  D    +F  F        RR  G GLG
Sbjct: 1043 QGSVEMRVSLLAEDELAQTLRFDVVDTGIGMTRDTVARLFEPFTQAESDTTRRFGGTGLG 1102

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            L+I      L GG VS+ S     +     +
Sbjct: 1103 LAICRRLARLMGGDVSLDSEPGQGSCATLTL 1133


>gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 900

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 155/379 (40%), Gaps = 20/379 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E+     V            G+ +    G+I   N     ++      +  G  IR  
Sbjct: 356 RAESARRVSVLELETIFSASLVGIILV-RMGKIINVNKRMSDIFGYSREEILSG-DIRQF 413

Query: 484 AATCS--RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +     R++       L    +   + + K   G+L   + S    S   L    T+  
Sbjct: 414 FSDRQSFRHFVREHLHLLAEGDVEQIEYQLKKKDGSLIPCTLSGKAISPQDLAKG-TVWV 472

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++     E+ L    EA   A   K+ F+ ++S+E+R+P+  IIG +++L    L  
Sbjct: 473 IEDISRRKAVEKELYHAREAAETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPD 532

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L   Q Q +E I  S+  L+ ++NDILD + ++AG  +L      L +LLNEV Q +   
Sbjct: 533 L---QRQQLELIHRSAIRLMIIINDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPT 589

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----- 715
               N+R+ +I    +    V D+ +++Q+ + ++ N++ F+ KG  + L  +       
Sbjct: 590 AQRKNLRLHLIVAPNVPDMLVGDQTKIMQVLTNLIDNSLKFTRKG-QITLTVSNQPSPNS 648

Query: 716 ---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
                  +F V + G  I       VF  F        RR  G GLGLSI +  + L GG
Sbjct: 649 FANGDMLLFEVADTGIGIAPTYYDKVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGG 708

Query: 771 HVSISSSDEGVTTINCRIP 789
            +   S     T  +  +P
Sbjct: 709 RIWFESELAKGTRFSFTLP 727


>gi|332704442|ref|ZP_08424530.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554591|gb|EGJ51635.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 836

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/529 (19%), Positives = 198/529 (37%), Gaps = 56/529 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + +             V +A    +      N  + ++            + DEL   
Sbjct: 177 EDLRESEARFKATFDQAAVGMAQTSPDNRFLRANAKYCQMLGY---------TFDELARI 227

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNP----RGGTI 413
                 LPE  + +            S    +   L  +G  +   VTS+      G   
Sbjct: 228 SLDDIVLPEDRDKERLLVGQLLAGDISSISLEWRCLRKDGSIIWTEVTSSLVRKYSGEPD 287

Query: 414 WMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           ++     +++V+   E +    V+      ++  + +       R    NPAF +     
Sbjct: 288 YIIHAKLDISVRKKAEEELFKSVQEYKALAENSPDLIIRVNRGLRYLYVNPAFEAFSGHP 347

Query: 471 ENRLSPGTHIRN----------IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            +    G  IR           I    +R ++      L  A+    ++ R      +  
Sbjct: 348 ASE-CMGKSIREACYLPEITEKIEEVVARVFSTRQAESLDFALRKPAEEARHFQASVVLE 406

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                LE S + L          ++T+  R E    +  EA  +A+  K+ F+ ++S+E+
Sbjct: 407 SGQEGLEESALVLS--------RDITELKRLEAESKQAMEAAEQANRAKSEFLANMSHEI 458

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  ++G  DL   +   + +     Y++    S+  LLN+VNDILDLA ++AG +++
Sbjct: 459 RTPMNGVMGMLDLALMN---NPDPSVRSYLQMGKKSAGHLLNIVNDILDLARIEAGRIEI 515

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAM 699
                 +      + +++A +  +  +R   +    + S  + D  RL+Q+F+ ++ NA+
Sbjct: 516 GTREFDVRMSFEALFRTMALEAEKKGLRFSAVIASDIPSRLIGDEGRLIQVFTNLIGNAI 575

Query: 700 DFSSKGS-TVILKAARDNG----------DFIF---SVKNNGSSIPEDMCKSVFNRF--V 743
            F++KG  TV +  AR             D I    S+ + G  IP D  + +F  F  V
Sbjct: 576 KFTTKGEITVKVTVARPTDIGMQEACPHTDAICMFASISDTGIGIPADQLEKIFESFAQV 635

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 Q  G GLGL I    + L  G +   S     +T    +  +E
Sbjct: 636 RGDLHLQHFGTGLGLPISRQLVELMDGKIWSESELGKGSTFYFTVTLQE 684



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 98/298 (32%), Gaps = 20/298 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIF-DQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL-- 355
            +  + +    +I+  +   + I       +Q  +R   E+    L ++   P    L  
Sbjct: 40  ESYEEGVKLLQDIMEFIPQGLIIAKGPKANIQIISRYGREIIGQPLRYVQGRPRAGGLQT 99

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----- 410
              L +    P +   +    +I +  +     +     P+G  + +   S P       
Sbjct: 100 WRMLHTDGVTPVRAEDQPLARSI-ARGELVAEEEYVILRPDGGKVPIACNSGPIRAESGS 158

Query: 411 --GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             G +  + N+     L             T D  + G+A   PD R   +N  +  +  
Sbjct: 159 ITGGVLSWINVAKSQKLLEDLRESEARFKATFDQAAVGMAQTSPDNRFLRANAKYCQMLG 218

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG-----TLELLSD 523
              + L+    + +I     R         L A  I+S   E + L+        E+ S 
Sbjct: 219 YTFDELAR-ISLDDIVLPEDRDKERLLVGQLLAGDISSISLEWRCLRKDGSIIWTEVTSS 277

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            V +YS  P      +   ++++   +AE  L +  +  +   E     +  V+  LR
Sbjct: 278 LVRKYSGEP---DYIIHAKLDISVRKKAEEELFKSVQEYKALAENSPDLIIRVNRGLR 332



 Score = 45.3 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 86/283 (30%), Gaps = 29/283 (10%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           +A++    + L    + FK  FD     +         L AN  Y +          +  
Sbjct: 169 VAKSQKLLEDLRESEARFKATFDQAAVGMAQTSPDNRFLRANAKYCQMLGYTFDELARIS 228

Query: 238 GESRKLFKEEIKKRMISSSALEKNFC----ETVSTLEHGNNKSYKIVRVL------NSFG 287
            +   L ++  K+R++    L  +      E     + G+    ++   L          
Sbjct: 229 LDDIVLPEDRDKERLLVGQLLAGDISSISLEWRCLRKDGSIIWTEVTSSLVRKYSGEPDY 288

Query: 288 EAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                +D+S     E  +   +     +  N    I   ++     + N +F        
Sbjct: 289 IIHAKLDISVRKKAEEELFKSVQEYKALAENSPDLIIRVNRGLRYLYVNPAFEA------ 342

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
              + +P+++ + + +R A  LPE               + +E+       P  +  H  
Sbjct: 343 --FSGHPASECMGKSIREACYLPEITEKIEEVVARVFSTRQAESLDFALRKPAEEARHFQ 400

Query: 404 VTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGET 439
            +     G        + +  ++T    LE +    ++   + 
Sbjct: 401 ASVVLESGQEGLEESALVLSRDITELKRLEAESKQAMEAAEQA 443


>gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1112

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 104/530 (19%), Positives = 218/530 (41%), Gaps = 43/530 (8%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI-AIF----DQNRYLQFHNRSFVELWEI 341
           G  G+ +D+++     + L+ + E+   +   +  +F      N  + + + SF +++  
Sbjct: 291 GTLGVTLDITERKKAEEALSKSEEMFRQMADNMGEVFWLRSGDNSRMLYVSPSFEKVFGR 350

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
               L  +P+    ++ +   ++       +     +     +S   +     P+G+   
Sbjct: 351 SRQDLYHDPNC--FVDMVHGDDR---SAVLRELDREVSGDEDASFNMEYRIVRPDGEIRW 405

Query: 402 VIVTSNP----RGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           V   S P    +G  I    +  ++T   + E ++  L +      +  S+ + +    G
Sbjct: 406 VWARSFPVRDAQGVIIRYTGIAVDITRIKEAENEFKALSREYETVFNGTSDALFLVQVLG 465

Query: 455 ----RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
               R   +N     L       +   T    +        + +    + A    S+++ 
Sbjct: 466 EESFRFIRNNLTHEQLTGLTMEVIQGRTPQDVLGRDLGGQVSRNYQRCVQARAPISYEE- 524

Query: 511 RKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKA 565
                 TL+L   + V   ++ P+     +        ++T+   AE  L +  E   KA
Sbjct: 525 ------TLDLPGGERVWFTTLTPVFENGDISYIVGSAQDITERKNAEIELYQAKEQAEKA 578

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K+ F+ ++S+E+R+P++ IIG  D+L +    S +  +   V+    S+  L  ++N
Sbjct: 579 SMAKSEFLANMSHEIRTPISGIIGALDMLASE---SADQSRKDLVDMTLESARSLEQIIN 635

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DILDL+ V+AG + L +    L  L+  V    + +     I +KV +D +L  +V  D 
Sbjct: 636 DILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQARNQGIALKVDADSRLPEYVRGDA 695

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            RL Q+   ++SNA+ F+  G   + +KA           F V+++G  I  D   S+F+
Sbjct: 696 HRLEQVLRNLVSNAVKFTQAGHVLIRVKAMDIDEHKATVEFQVEDSGEGISGDFLPSLFD 755

Query: 741 RFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F         + +G GLGL+I +  + + GG + + S+    +  +  +
Sbjct: 756 SFTQADITYGKKHQGSGLGLAISQRLVQMMGGEIQVQSTPGRGSVFSFAL 805



 Score = 65.3 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/358 (10%), Positives = 106/358 (29%), Gaps = 57/358 (15%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQN------------DCAIKIEGRVSGSCAFLRI 168
                +  +   +L ++ + F +                  +     +GR+ G+      
Sbjct: 239 EDESSRFPEYIARLYEQQEGFSVETRLVRKSGEIFPALLNFEPYCDDKGRMVGTL----- 293

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANISYKKNTE 227
               G+  ++ E     + LS    +F+ + D++  + W R      +L+ + S++K   
Sbjct: 294 ----GVTLDITERKKAEEALSKSEEMFRQMADNMGEVFWLRSGDNSRMLYVSPSFEKVFG 349

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-------TLEHGNNKSYKIV 280
                          +   + +  ++     E +  E  S           G  +     
Sbjct: 350 RSRQDLYHDPNCFVDMVHGDDRSAVLRELDREVSGDEDASFNMEYRIVRPDGEIRWVWAR 409

Query: 281 RVLNSFGE------AGIAIDVSKEITVNDQLTHTYEILHNLTVA-------IAIFDQNR- 326
                  +       GIA+D+++     ++          +          + +  +   
Sbjct: 410 SFPVRDAQGVIIRYTGIAVDITRIKEAENEFKALSREYETVFNGTSDALFLVQVLGEESF 469

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
               +N +  +L  + +  +      D L   L          N+           ++  
Sbjct: 470 RFIRNNLTHEQLTGLTMEVIQGRTPQDVLGRDLGGQV----SRNY-----QRCVQARAPI 520

Query: 387 THKDTWHLPNG-----QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           ++++T  LP G      TL  +  +      +   +++T + + E +     +   + 
Sbjct: 521 SYEETLDLPGGERVWFTTLTPVFENGDISYIVGSAQDITERKNAEIELYQAKEQAEKA 578


>gi|298387446|ref|ZP_06996998.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
 gi|298259653|gb|EFI02525.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
          Length = 883

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/515 (19%), Positives = 210/515 (40%), Gaps = 36/515 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-------LAFLATN 349
           ++  +         I  N+   + I+D+   L   N   +++  I        L F    
Sbjct: 385 EQAALARSERLFKNIFANIPAGVEIYDKEGNLVDLNERDMDILGISDKSEVIGLNFFENP 444

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             + ++LE +R ++    +  +          Y+  +      +    +   +       
Sbjct: 445 NVDAQILESIRKSSITDFRARYSFECARHTGYYRPLKAGVIELYT---KVRKLYDNHGNL 501

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I +  + T ++D   + +    +     D+   G A      ++ L N    ++ + 
Sbjct: 502 TGYILINMDNTERIDALKRISDFENLFLLISDYAKVGYA------KLNLLNRQGYAIKQW 555

Query: 470 EENRL-SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL------- 521
            +N      T + ++    S+ + + D   + A    +   + K+ +G + +L       
Sbjct: 556 FKNMGEDENTPLSDVVGVYSKMHPD-DRSRMLAFFEEAKKGKAKAFKGEMRILRPGTKNE 614

Query: 522 -----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                ++ VL          + +    ++T     E  L E  E   ++D +K++F+ ++
Sbjct: 615 WNWVRTNVVLNLYEPEKGQVELIGVNYDITALKETEAKLIEAKEKAEESDRLKSAFLANM 674

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+ L+  ++      ++ QY++ +  ++ +LL L++DILDL+ ++AG
Sbjct: 675 SHEIRTPLNAIVGFSSLMVDTEDM---EERRQYMDIVEENNDLLLQLISDILDLSKIEAG 731

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
                   + +N L  ++  ++  K    N+ I           ++DR RL Q+ S  ++
Sbjct: 732 TFDFTEREVDVNLLCEDIVLAMRMKARP-NVEILFDRHLPECRIMSDRNRLHQVISNFVN 790

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA+ F+ +G+  +     D     F V + G  I  +M   +F RFV         G GL
Sbjct: 791 NALKFTEEGNIRVGYDQLDEAHLRFYVADTGIGIEPEMQNEIFERFVKLNSFVH--GTGL 848

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI  S +   GG + + S  E  +     +P K
Sbjct: 849 GLSICRSIVEQLGGEIGVDSEPEKGSCFWFTLPIK 883


>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1820

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 117/701 (16%), Positives = 258/701 (36%), Gaps = 109/701 (15%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--NTETEGI 231
            +  ++ E       L      F+   +      W  D  G I++ + +Y++     T+ +
Sbjct: 673  VNRDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVYLSETYRRTFQLPTQEL 732

Query: 232  VFQKAIGESRKLFKEEIKK--RMISSSALEKNFCETVSTLEHGNNKS----YKIVRVLNS 285
            +             +  ++  ++++ +       E+V   +          + I    + 
Sbjct: 733  IGTNIFDIYPPELIQTFRETIQIVARTHQVMETVESVPCSDGTVRDFLVYKFPISSKPDE 792

Query: 286  FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRYLQFHNRSFVELWEIDL 343
                GIAID+++       L  + E    +      AI+D N      N +F        
Sbjct: 793  CLIGGIAIDITERKQAEAALRKSEERWQLVIEGNQDAIWDWN---IITNETFR---SARW 846

Query: 344  AFLATNPSNDELLEFLRSANKLPEQLNWK---TWKENIFSVYKSSETHKDTWHLPNGQTL 400
            A L    +   + +     +++    +++     +++  S    +   +      +    
Sbjct: 847  AELIKEQNYQPIADHADCISRI-HPDDYERVMAVRQDCLSRKIPNYVVEYRLRCNDDSYK 905

Query: 401  HVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLV----------KVQGETIDH- 442
             V+V +  +          +   +++T +++ +      +          +   +++D  
Sbjct: 906  WVLVHATGQWDERGNPVRMVGSIKDITERIEAQEALQRQLHRTLLLEKITQKIRQSLDSK 965

Query: 443  ---------LSEGVAVFGP---DGRIKLSNPA------------FRSLWKTEENRLSPGT 478
                     + + +AV         I   +P             + S+ K  E   +   
Sbjct: 966  EIFETAATQIGQALAV-DRCLIHSYISHHDPHIPLVAEYNNVLDYCSMQK-WEFTTTGNR 1023

Query: 479  HIRNIAATCSRYYNESDGWDLFA----------------AIITSFDDE------------ 510
            HI  + +      + +   D                   A+ TS+  E            
Sbjct: 1024 HILQMMSQDKAIASANVYTDPLLQTAVPSCCEIGVKSMLAVRTSYQGEPNGAICLHQCKY 1083

Query: 511  -RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEI 568
             R+     +ELL ++V     I L  AQ +       + +  +  AL +   A   A+  
Sbjct: 1084 FRQWTPEEIELL-EAVAAQLGIALAQAQLLEQETRQREELTIKNFALEQAKRAAEAANRA 1142

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+  +S+E+R+P+  +IG T LL  ++   L S+Q  +VE +  S   LL+++NDIL
Sbjct: 1143 KSEFLAMMSHEIRTPMNAVIGMTGLLLDTE---LTSQQRDFVETVLTSGDALLSIINDIL 1199

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
            D + +++G ++L      +   + +V   +A K  + +I +  +   ++      D  RL
Sbjct: 1200 DFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRL 1259

Query: 688  LQIFSKILSNAMDFSSKGSTVI-LKAARDNG-------DFIFSVKNNGSSIPEDMCKSVF 739
             QI + +L+NA+ F+ +G  V+ +++            + IF++K+ G  I  +    +F
Sbjct: 1260 RQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKTKNCCEIIFTIKDTGIGIAPETMDLLF 1319

Query: 740  NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              FV        +  G GLGL I +    + GG++ + S  
Sbjct: 1320 QPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRG 1360



 Score = 88.1 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 139/434 (32%), Gaps = 51/434 (11%)

Query: 171 LDGIYSELAETTLKCKK----LSNHISVFKVLFDSLDFLVWHRDQAGD-ILWANISYKKN 225
           +  I  ELA+   K  +    L    +  + L +++  + W  D       +     +  
Sbjct: 292 IGRINQELADRIEKQTQVEIALRASENRLRELLETVRVIPWEVDLKTQHFTYVGPQAETL 351

Query: 226 TETEGIVFQKAIGESRKLF--KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
                  + +       L     +   R    +A +    E    +   + +   +  V+
Sbjct: 352 LAYPIAQWYEENFWDNHLHPHDRDWAVRFCQEAANKGQNHELEYRMLAADGRVVWLRDVV 411

Query: 284 -------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ---NRYLQFHNR 333
                        G   D++    V + L      L   +  I I D    N  + + N 
Sbjct: 412 NVVEVDGTPVMLRGFMFDITDLKRVEETLRLRERALAASSNGIVISDAKLPNYPVIYVNS 471

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW- 392
           +F ++       +           FL+  +        +   E + S  K+ +  K    
Sbjct: 472 AFEQITGYKATEIVGRNC-----RFLQGNDTT------QPAIEELRSALKAGKNCKVILR 520

Query: 393 -HLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +  +G      ++ +P     G +  F  +   +    +    ++ Q  T +++ +GV 
Sbjct: 521 NYRKDGSLFWNQLSVSPIYNDNGQLSHFIGIQTDISDRQQAEASLRRQALTFENIYDGVI 580

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           +    G+I   NPA   ++   ++ +  G  I       S  +   +   L +AII    
Sbjct: 581 ITNLQGQILDWNPAAERMFGYSKDHI-CGQSI-------SILHKVEEDAALNSAIIAEIT 632

Query: 509 DERKSLQGTLELL----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            + +   G +  +    S  + E +I+ L + Q         +    ER      E L +
Sbjct: 633 KQGR-WSGEINFVRQDGSQGICETTIVALQDDQGQTVATISVNRDITERK---HAELLLR 688

Query: 565 ADEIKNSFVQHVSY 578
             E +  F   +++
Sbjct: 689 RSEER--FQAFMNH 700



 Score = 84.6 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 76/589 (12%), Positives = 180/589 (30%), Gaps = 73/589 (12%)

Query: 22  CKIAVFGTIAGMLLT-TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYH-SLLTEN 79
             +     +AG+     +  +I   +       ++      L++  ++ ++   +L    
Sbjct: 258 SPLPTVVLVAGIFNAGAVTLLIYFAQATKLSNHQIGRINQELADRIEKQTQVEIALRASE 317

Query: 80  NC--------LTIVWDGKDETPEIIGQLHQRIDIPQTD-TDLLSFENWLKFHHYIKLSKA 130
           N           I W+   +T        Q   +             W    H      A
Sbjct: 318 NRLRELLETVRVIPWEVDLKTQHFTYVGPQAETLLAYPIAQWYEENFWDNHLHPHDRDWA 377

Query: 131 TE---KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
                +   +GQ+ +L         +  +GRV      + ++ +DG    L         
Sbjct: 378 VRFCQEAANKGQNHELEY-----RMLAADGRVVWLRDVVNVVEVDGTPVMLRGFMFDITD 432

Query: 188 LSNHISVFK----VLFDSLDFLVWHRDQAGD---ILWANISYKKNTETEGIVFQKAIGES 240
           L       +     L  S + +V   D       +++ N ++++ T   G    + +G +
Sbjct: 433 LKRVEETLRLRERALAASSNGIV-ISDAKLPNYPVIYVNSAFEQIT---GYKATEIVGRN 488

Query: 241 RKLFK-----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYK----IVRVLNSFGE--- 288
            +  +     +   + + S+    KN C+ +      +   +     +  + N  G+   
Sbjct: 489 CRFLQGNDTTQPAIEELRSALKAGKN-CKVILRNYRKDGSLFWNQLSVSPIYNDNGQLSH 547

Query: 289 -AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             GI  D+S        L        N+   + I +    +   N +   ++      + 
Sbjct: 548 FIGIQTDISDRQQAEASLRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSKDHIC 607

Query: 348 TN---PSNDELLEFLRSANKLPEQLNWKTWKENI-FSVYKSSETHKDTWHLPNGQTLHVI 403
                  +    +   ++  + E      W   I F     S+   +T          ++
Sbjct: 608 GQSISILHKVEEDAALNSAIIAEITKQGRWSGEINFVRQDGSQGICETT---------IV 658

Query: 404 VTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
              + +G T+       ++T +   E       +     ++H      +   DG I   +
Sbjct: 659 ALQDDQGQTVATISVNRDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVYLS 718

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             +R  ++     L  GT+I +I      Y  E          I +   +      ++  
Sbjct: 719 ETYRRTFQLPTQEL-IGTNIFDI------YPPELIQTFRETIQIVARTHQVMETVESVPC 771

Query: 521 LSDSVLEYSIIPLPNAQTMLTF------VNVTDSVRAERALTEKNEALR 563
              +V ++ +   P +            +++T+  +AE AL +  E  +
Sbjct: 772 SDGTVRDFLVYKFPISSKPDECLIGGIAIDITERKQAEAALRKSEERWQ 820



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 117/350 (33%), Gaps = 47/350 (13%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +    GI +++++       L      F+ ++D     V   +  G IL  N + ++   
Sbjct: 545 LSHFIGIQTDISDRQQAEASLRRQALTFENIYDG----VIITNLQGQILDWNPAAERMF- 599

Query: 228 TEGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVSTL-EHGNNKSYKIVR 281
             G       G+S  +         +   +I+    +  +   ++ + + G+    +   
Sbjct: 600 --GYSKDHICGQSISILHKVEEDAALNSAIIAEITKQGRWSGEINFVRQDGSQGICETTI 657

Query: 282 VL------NSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
           V        +     +  D+++    E+ +          +++      I D +  + + 
Sbjct: 658 VALQDDQGQTVATISVNRDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVYL 717

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           + ++   +++    L      D            PE +  +T++E I  V ++ +  +  
Sbjct: 718 SETYRRTFQLPTQELIGTNIFDIYP---------PELI--QTFRETIQIVARTHQVMETV 766

Query: 392 WHLP--NGQT-----LHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHL 443
             +P  +G           ++S P    I  +  ++T +   E       +     I+  
Sbjct: 767 ESVPCSDGTVRDFLVYKFPISSKPDECLIGGIAIDITERKQAEAALRKSEERWQLVIEGN 826

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            + +  +       ++N  FRS    E  +      I + A   SR + +
Sbjct: 827 QDAIWDWN-----IITNETFRSARWAELIKEQNYQPIADHADCISRIHPD 871


>gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1123

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/383 (22%), Positives = 163/383 (42%), Gaps = 21/383 (5%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIR 481
               T             D +++G+ V    G I L+NPA  ++   EEN  L    H  
Sbjct: 337 KRSSTALEHERASLKAITDTMADGLFVMDNHGLIVLANPAACAMLGYEENEMLGHQAHAL 396

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---- 537
             +   + +   S+   +F A+      +  + +         V+   +  +P  Q    
Sbjct: 397 FHSHAVNDHLPISE-CPVFKAV---SGGKPYAGEEYFSHKDGRVIAMDVASMPLVQDGQL 452

Query: 538 --TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             ++  F ++T     E+AL     A  +A+  K+ F+  +S+E+R+P+  IIG T LL 
Sbjct: 453 TGSVNAFRDITPRKETEQALIAAKHAAERANMAKSDFLATMSHEIRTPMNGIIGMTSLLL 512

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    L+S+Q+ Y   I  S+  LL ++NDILD + ++AG ++   +  +L  L+  V 
Sbjct: 513 DTH---LSSEQNYYTNTIRVSAESLLTIINDILDFSKMEAGKLEFEETPFLLTPLVEGVV 569

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
             +A +     I +            ++D  RL Q+   +  NA+ F+ KGS  + +   
Sbjct: 570 DILAPRAKAKGIGLTFAVPRDASRVFISDAGRLRQVLLNLAGNAVKFTEKGSVAITVTLE 629

Query: 714 RDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             +    +  F++ + G  IP++    +F+RF        R   G GLGL I +  +   
Sbjct: 630 PKDETCVEACFAITDTGIGIPDEAKSRLFSRFTQADSSTARKFGGTGLGLVICQRIVEAL 689

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +   S+    +    + P +
Sbjct: 690 GGAIGFDSTPGQGSRFWFQFPLR 712


>gi|332703674|ref|ZP_08423762.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 1087

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 137/759 (18%), Positives = 277/759 (36%), Gaps = 122/759 (16%)

Query: 129 KATEKLRKEGQS------FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
              + L K+G+          V ET     ++   RV G   +   ++L+    E  + T
Sbjct: 203 HRLQDLFKQGEDDIQESIARTVIETGRSARLEAPIRVHGEITW-WDIALEQTRDEHGQAT 261

Query: 183 -------------LKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTET 228
                             L      F+ +F S    +     + G  +  N ++   T T
Sbjct: 262 GIIGVAFNITDRMKAEASLRESEEKFRKIFSSCPDPISISTLEDGRYIEVNDAF---TRT 318

Query: 229 EGIVFQKAIGESRKLF----KEEIKKRMISSSALEKNFCETVS--TLEHGNNKSY----K 278
            G +  + IG+S          E ++++I     + +    VS    + G  ++     +
Sbjct: 319 SGFLRDEVIGKSSLDLGVWRAPEDRQQVIDKLKDKGSLRNFVSKRRTKAGKARTVLLSTE 378

Query: 279 IVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           I+ +        ++ D++    +E  +  +      ++ +   +I  FD+     + N +
Sbjct: 379 ILEIAGQPCLLSVSKDITLLKKRESELRKREADYRSLVEHSPDSIVRFDRKLRRIYINPA 438

Query: 335 FVELWEIDLA-FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DT 391
           F  +        L   PS    L            +N   +++ +  ++++    +   +
Sbjct: 439 FERVTGARQECSLNKTPSETTGL-----------PVNSSAFEDTLREIFETGVPKEIDLS 487

Query: 392 WHLPNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLET-------KYNTLVKVQG 437
           +  P+GQ + +     P  G        + +  ++T     E        +  TL+++  
Sbjct: 488 YLNPSGQRI-LHCWLVPEFGHDGQVETVLSIAHDITEHKQAEASMQLQQDRLETLLRLSQ 546

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSL---WKTEENRLSPGTHIRNIAATCSRYYNES 494
            T +   + +  F  +  I+L+   F  L    +       P   I  +     +   ES
Sbjct: 547 MT-ESTEDEILGFILETSIRLTGSRFGFLGAVHRDNGFMTFPKCSIGTMEHCDVKILPES 605

Query: 495 DGWDLFA-----------AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-- 541
              D              +II  +  E  + +G L      +     +PL ++  +    
Sbjct: 606 FALDRAGLWSNCLRQAKPSIINDYSAEHPAKKG-LPPGHVPITRLLAVPLLDSGKVTFIA 664

Query: 542 -----------------------FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                                   +      RAE    +  E    A+  K  F+ ++S+
Sbjct: 665 VVANKPDDYDQSDITQVTLLLEGMLAHLKRRRAEEGHKQAREEAEAANRAKTEFLANMSH 724

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  ++G  +L   + +   + K   ++     S  +LL+++ND+LDLA ++AG +
Sbjct: 725 ELRTPLNGVLGMIEL---AGMSCADPKTHDFLRMAKDSGRMLLDIINDLLDLAKIEAGKV 781

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
           +L      L + L+     +        +R  ++ D  +    V D  R  Q+ + ++ N
Sbjct: 782 ELEKKVFNLREALDNTFYPVCMVAERKGLRCSLVVDQSVPEHLVGDLGRFRQVVTNLVGN 841

Query: 698 AMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
           A+ F+ KG  V L   R       D+    F VK+ G  IP+DM  ++F+ F        
Sbjct: 842 AVKFTEKGE-VNLSVMRIPHPFATDSVQIRFRVKDTGIGIPQDMHNAIFDDFTQVGRSYS 900

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +  G GLGL+I  + +NL GG +S+ S +   +T    
Sbjct: 901 SKYGGTGLGLAISRNLVNLMGGDISVVSEEGKGSTFTFT 939



 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 65/468 (13%), Positives = 146/468 (31%), Gaps = 36/468 (7%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAF----LRILSLDGIYSELA 179
              L +A  +L  +GQ+       ++    ++  R   +         I    G+  ++ 
Sbjct: 90  PRSLEEAPLRLALKGQAVQGEERIRHLKTGELRWREYRANPVRDERGDITGAVGLVRDIT 149

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA-NISY-KKNTETEGIVFQKAI 237
                 K L      F++       +V+ +D+     W  N  +     E  G   Q   
Sbjct: 150 GIKRTEKALRESEERFQIALLHSPAVVFAKDRDLRFTWIYNPPFGLSPDEIIGHRLQDLF 209

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV------RVLNSFGEAGI 291
            +     +E I + +I +    ++         HG    + I           + G  G+
Sbjct: 210 KQGEDDIQESIARTVIET---GRSARLEAPIRVHGEITWWDIALEQTRDEHGQATGIIGV 266

Query: 292 AIDVS----KEITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFL 346
           A +++     E ++ +      +I  +    I+I   ++      N +F          +
Sbjct: 267 AFNITDRMKAEASLRESEEKFRKIFSSCPDPISISTLEDGRYIEVNDAFTRTSGFLRDEV 326

Query: 347 ATNPSND-ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
               S D  +        ++ ++L  K    N  S  ++      T  L   + L +   
Sbjct: 327 IGKSSLDLGVWRAPEDRQQVIDKLKDKGSLRNFVSKRRTKAGKARTVLLST-EILEIAGQ 385

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                  + + +++T+    E++           ++H  + +  F    R    NPAF  
Sbjct: 386 P----CLLSVSKDITLLKKRESELRKREADYRSLVEHSPDSIVRFDRKLRRIYINPAFER 441

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +    +      T     + T     N S   D    I  +   +   L   L      +
Sbjct: 442 VTGARQECSLNKTP----SETTGLPVNSSAFEDTLREIFETGVPKEIDLS-YLNPSGQRI 496

Query: 526 LEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           L   ++P           +    ++T+  +AE ++  + + L     +
Sbjct: 497 LHCWLVPEFGHDGQVETVLSIAHDITEHKQAEASMQLQQDRLETLLRL 544



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 119/388 (30%), Gaps = 41/388 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV- 232
           +  EL     + + L+   ++   L +SL   +W  D   ++   N + +     E    
Sbjct: 11  LRMELEVERARAEALACDRNLLTALIESLSDEIWFCDAEANLKLLNKAARTELGLETSDL 70

Query: 233 --FQKAIGESRKLFKEEIKKRMISSSALEKNF-------CETVSTLEHGNNKS--YKIVR 281
                 +    ++   +   R +  + L            E +  L+ G  +   Y+   
Sbjct: 71  FRPLDDVNAQLEILNPDGTPRSLEEAPLRLALKGQAVQGEERIRHLKTGELRWREYRANP 130

Query: 282 VLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHN--LTVAIAIFDQNRYLQF---HN 332
           V +  G+     G+  D++        L  + E      L     +F ++R L+F   +N
Sbjct: 131 VRDERGDITGAVGLVRDITGIKRTEKALRESEERFQIALLHSPAVVFAKDRDLRFTWIYN 190

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
             F     +    +  +         L+   K  E    ++    +    +S+       
Sbjct: 191 PPF----GLSPDEIIGH--------RLQDLFKQGEDDIQESIARTVIETGRSARLEAPIR 238

Query: 393 HLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
                    + +           G I +  N+T ++  E       +   +      + +
Sbjct: 239 VHGEITWWDIALEQTRDEHGQATGIIGVAFNITDRMKAEASLRESEEKFRKIFSSCPDPI 298

Query: 448 AV-FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           ++    DGR    N AF        + +   + +            +          + +
Sbjct: 299 SISTLEDGRYIEVNDAFTRTSGFLRDEVIGKSSLDLGVWRAPEDRQQVIDKLKDKGSLRN 358

Query: 507 FDDERKSLQGTLE--LLSDSVLEYSIIP 532
           F  +R++  G     LLS  +LE +  P
Sbjct: 359 FVSKRRTKAGKARTVLLSTEILEIAGQP 386


>gi|332994427|gb|AEF04482.1| PAS signal transduction protein [Alteromonas sp. SN2]
          Length = 1107

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/513 (19%), Positives = 186/513 (36%), Gaps = 34/513 (6%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           ++++    + +      +   ++ +   D N  +   N    +L E     L  N ++  
Sbjct: 136 ITEQQHKENDMLIQRRAMDEHSI-VVTLDLNGTILSANDKCCQLSEFTRGELIGNNAD-- 192

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----- 409
               + +   +P        +          E    T    +G    V  T  P      
Sbjct: 193 ----MLNVKNVPLPTRLAILQSLFKGEIWHGELQSVT---KSGTPWFVFCTIVPNVNEQG 245

Query: 410 --GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                + +  +++ Q  LE +  T  +      + + EGV      G+ +  NP    L 
Sbjct: 246 RVENLVVLCTDISNQKRLEKRLETGRQFYQSITNSIGEGVYAVDAKGKTQFLNPEASRLL 305

Query: 468 KTEENRLS-PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             E   L     H               D   +  AI         S +         + 
Sbjct: 306 GWELADLQSHRFHNAVHYQKEDGTLLSRDECPVNHAICKGKT--YSSDEDFFTDKRGRIF 363

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVR-------AERALTEKNEALRKADEIKNSFVQHVSYE 579
             SI+ +P               R        ER L    +    A++ K  F+  +S+E
Sbjct: 364 PISIVAVPLEDIHGEPNGHVGVFRDISGRKGLERQLQHAYKEAANANKAKGDFLATMSHE 423

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIG T L   +   +   +Q  Y+  +  S+T LL L+N ILD + V+A  ++
Sbjct: 424 IRTPMNAIIGLTHLALETDNYT---QQQSYMTKVKGSATSLLTLINGILDFSKVEAQQIE 480

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNA 698
           L+++   L D++N++ Q    K  + ++++          +   D  ++ Q+   +L NA
Sbjct: 481 LHHADFNLADMMNKLAQVFQHKARQKHLQLLFDMRLDTDVTCNGDSDKIYQVLVNLLGNA 540

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
           + F+  G  V L  +++     F V + G  I  D  + +FN FV        +  G GL
Sbjct: 541 IKFTRHG-FVKLTVSKEKDALSFCVSDTGIGIDADNKEKLFNAFVQADASISREYGGTGL 599

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I +  + L  G +  +S     T     +P
Sbjct: 600 GLAISKRLVELMHGELEFTSELGKGTQFCFAVP 632


>gi|329888197|ref|ZP_08266795.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846753|gb|EGF96315.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 420

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 169/395 (42%), Gaps = 22/395 (5%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T     + +         + I+ +S+   +F   GR+ L N  F+  +   +  + PG
Sbjct: 6   DVTEARRTKAQAQAAESRLRDAIESVSDAFVLFDRRGRLILWNQGFQDAFAFPKGVVRPG 65

Query: 478 THIRNIAATCSRYY-NESDGWDLFAAIITSFDDERKSLQGTLELLSDS-----------V 525
                +    +     E       A +      + + LQ       D            +
Sbjct: 66  AQKDELNRIAAEAIKAEHPSAGGRAGVREVELKDGRWLQMAERFTGDGGTVVICADITVI 125

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE-----ALRKADEIKNSFVQHVSYEL 580
                     A  +   V   ++ +A  AL  +           A++ K+ F+ ++S+EL
Sbjct: 126 RRQEAERRRAADELRAMVAELEASQANLALLARKYEVAMTRAEAANQAKSEFLANMSHEL 185

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMK 639
           R+PL  I GF++++     G L  ++ + Y   I  S   LL+L+NDILD+A ++AG + 
Sbjct: 186 RTPLNAINGFSEIMAAEMFGPLGDRRYKGYAADIHGSGQHLLSLINDILDMAKIEAGKLT 245

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L+Y  + L+ L  E  + +  K  E  + + +     L    AD++ L Q+   ++SNA+
Sbjct: 246 LHYEPMALDVLCAEAVRLMRGKAQEAQLALTLDCPEDL-HIEADQRGLKQVLLNLISNAV 304

Query: 700 DFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGL 756
            F+ +G  V +K A RD      SV + G  I     + +   F      H    +G GL
Sbjct: 305 KFTPEGGAVSVKVAPRDAATVRVSVVDTGIGIAAKDLERLAQPFEQVEGQHSKSTQGTGL 364

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL++ +S I LHGG ++I S     TT+   +P++
Sbjct: 365 GLALTKSLIELHGGAMTIESEPGRGTTVWFDLPTR 399



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 17/136 (12%)

Query: 290 GIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G+A+DV++      Q         + + +++ A  +FD+   L   N+ F + +      
Sbjct: 2   GVALDVTEARRTKAQAQAAESRLRDAIESVSDAFVLFDRRGRLILWNQGFQDAFAFPKGV 61

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +      DEL      A K                             L +G+ L +   
Sbjct: 62  VRPGAQKDELNRIAAEAIKAEHPS-------------AGGRAGVREVELKDGRWLQMAER 108

Query: 406 SNPRGGTIWMFENLTV 421
               GGT+ +  ++TV
Sbjct: 109 FTGDGGTVVICADITV 124


>gi|75909154|ref|YP_323450.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702879|gb|ABA22555.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 573

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/379 (24%), Positives = 159/379 (41%), Gaps = 13/379 (3%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI- 483
            +              +  S G+ +     +I  +NPA   +   +   L        I 
Sbjct: 196 AQEALRKSEAQFRAIFELSSIGIGLVDMKAQIVDANPALCQMLGYQREELCGKRFTDYIS 255

Query: 484 -----AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ- 537
                     +   E              + ER  L     L+    L  S+IP    + 
Sbjct: 256 QQRGDVERYKQLMTEICIDAQQHHEKPHLEIERAFLHRDGRLVWTR-LSVSVIPGSYGEP 314

Query: 538 --TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +    ++TD  + E  L     A       K+ F+  +S+ELR+PL  I+G + LL+
Sbjct: 315 EYFLAIIDDITDRKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQ 374

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +GSLN KQ +Y+  I +S   LL L+NDILDL+ V+AG  +L    +++ D+ N+V 
Sbjct: 375 QEIVGSLNEKQQEYISCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVL 434

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            ++  +     +++    D +    +AD +R+ Q+   +L+NA+ F+S G  V L   R 
Sbjct: 435 LTVRDRAISKGLKLTQEIDPEASICIADDRRIKQMLLNLLTNAIKFTSVGE-VSLTVKRV 493

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
                F + + G  I  +    +F  F     R   Q  G GLGL++      LHGG V+
Sbjct: 494 PEGINFIISDTGIGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVT 553

Query: 774 ISSSDEGVTTINCRIPSKE 792
           ++S+    +     +P +E
Sbjct: 554 VTSTVGVGSQFTLFLPDQE 572



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 10/150 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
            +  +         I    ++ I + D    +   N +  ++       L      D   
Sbjct: 196 AQEALRKSEAQFRAIFELSSIGIGLVDMKAQIVDANPALCQMLGYQREELCGKRFTDYIS 255

Query: 354 -ELLEFLRSANKLPEQ-LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG- 410
            +  +  R    + E  ++ +   E      + +  H+D   +     L V V     G 
Sbjct: 256 QQRGDVERYKQLMTEICIDAQQHHEKPHLEIERAFLHRDGRLVW--TRLSVSVIPGSYGE 313

Query: 411 --GTIWMFENLTVQVDLETKYNTLVKVQGE 438
               + + +++T +   E K          
Sbjct: 314 PEYFLAIIDDITDRKQTEMKLRASQAAAEA 343


>gi|32477914|ref|NP_870908.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448471|emb|CAD77986.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 953

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/704 (17%), Positives = 239/704 (33%), Gaps = 77/704 (10%)

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLD-GIYSELAETTLKCKKLSNHISVFKVLFD 200
            L   T  +  ++I   ++   A LR       +   L E       L        +   
Sbjct: 120 SLEHVTLINRPLRIAVFINTVRAKLRDRMRQFEVRDLLLEKDRAQTSLRREARRLDMAIQ 179

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTE---TEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           +     W       + W+  ++++                G   +  +E+I      +  
Sbjct: 180 AGGMAAW-EWSKTHVYWS-EAFRRLHGFGKNVQPSESAMFGSIVESEREQIANHWSDAIE 237

Query: 258 LEKNFC--ETVSTLEHGNNKSYKIVRVLNSFGE-----AGIAIDVSKEITVNDQLTHTYE 310
               F     ++  + G      +   +           G+  D+++  T   +L  ++E
Sbjct: 238 QNAPFRSEFRINHPKLGERWLVAVGEPVKGKSGKTLRYTGLQWDITERKTAEMELRQSHE 297

Query: 311 ILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL---------E 357
               L       + + D +  +++ +     ++ ++   L   P  D +          E
Sbjct: 298 TFQRLITDNPQGLYVVDADFRMRYVSAGARSVF-VNAEPLIGKPFEDVMRTIWPNDFAEE 356

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            +R      E          +     ++ET    W       +  IV  + R G +  F 
Sbjct: 357 AIRVFRHTLETGEPYVAPPLVEQRVDTNETEAYDWS------IERIVLPDNRHGVVCHFY 410

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           N T +           +   E  D     + V   +           +         +  
Sbjct: 411 NNTQRQLSVDLLRESERYFREIADASPAMLWVTDENH--------MCTFLSKNWYDTTGQ 462

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI---IPLP 534
           T    +    +   +  D   +    +T+ +  +  L      ++D    +++    P  
Sbjct: 463 TPEEGMGLGWTNATHPDDHARVGEEFLTAANARQAVLSEYRLRMADGTYRWAVDVGRPRF 522

Query: 535 NAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           ++  +         +V D    E++L +       A+  +  F+ ++S+E+R+P+  I+G
Sbjct: 523 DSDGVFVGYTGYVIDVDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILG 582

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             D+LK       N    Q VE I  +   LLN++NDILDL+ +D+G M+L    +  + 
Sbjct: 583 HADILKDHLRDPDN---IQVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDG 639

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           LL EV+  +  +  E ++ +K+  DG +   +  D  RL QI   ++ NA+ F+  G   
Sbjct: 640 LLAEVRSLMDVRASEKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDSGEVK 699

Query: 709 ILKAARDNG----------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           IL      G                        IF + + G  I  +   S+F  FV   
Sbjct: 700 ILVGYDGPGKRAAEIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQASLFEPFVQAD 759

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R   G GLGL+I     +  GG VS+ S+    +     I
Sbjct: 760 STSTRSFGGTGLGLAICRRLAHALGGDVSVESTYGKGSKFTLTI 803


>gi|89100386|ref|ZP_01173250.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
 gi|89084905|gb|EAR64042.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
          Length = 587

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 156/364 (42%), Gaps = 21/364 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                     G  I+++  G+ +    G I L N  +  ++      L P  ++ N+   
Sbjct: 238 KAQEMQQDRLGTLIENMGSGLILIDSRGYISLVNKPYYEIFG-----LEPHGYVGNL--- 289

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
              YY   +  ++   +   F  E+K+ +  +  ++     + +  +P   T        
Sbjct: 290 ---YYEVIEQKEITDLVEDIFMTEQKTRKQMVIPVAIERKHFEVYGVPIIGT-------N 339

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  +    +      L+K ++++  FV +VS+EL++P+T+I GF++ L    +    +  
Sbjct: 340 DVWKGILLVFHDITELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAMHD-QAAL 398

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S +++ I   S  L +L+ D+LDL+  +    +L+   + L+ LL E    +  K  +  
Sbjct: 399 SAFLDIILKESDRLQSLIQDLLDLSKTEQQGFRLSVQEMDLSSLLGECLAILNGKAKDKA 458

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I I+       G    D  RL Q+F  +L+NA+ ++ +G  + +            VK+ 
Sbjct: 459 IDIEYSDQSGNGWIKGDPHRLKQVFINLLTNAITYTPQGGKISVSLEEKEDKVQVEVKDT 518

Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I +D    +F RF     A      G GLGL+IV+  +  H G +++ S     TT 
Sbjct: 519 GMGIDQDEIPRIFERFYRIDKARSRNSGGTGLGLAIVKHLVEAHKGSITVESEVGKGTTF 578

Query: 785 NCRI 788
             ++
Sbjct: 579 KVQL 582



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 25/196 (12%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKE---- 298
           L   +I  R         N    +     GN ++      ++  G    +I+V       
Sbjct: 179 LLGSKIAARYTKPIESATNVAIEL---AKGNYRARTYEDNIDETGMLSSSINVLARNLQD 235

Query: 299 --ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                  Q      ++ N+   + + D   Y+   N+ + E++ ++      N    E++
Sbjct: 236 MVKAQEMQQDRLGTLIENMGSGLILIDSRGYISLVNKPYYEIFGLEPHGYVGN-LYYEVI 294

Query: 357 EF-----LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
           E      L     + EQ      ++ +         H + + +P      +I T++   G
Sbjct: 295 EQKEITDLVEDIFMTEQKT----RKQMVIPVAIERKHFEVYGVP------IIGTNDVWKG 344

Query: 412 TIWMFENLTVQVDLET 427
            + +F ++T    LE 
Sbjct: 345 ILLVFHDITELKKLEQ 360


>gi|288941217|ref|YP_003443457.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896589|gb|ADC62425.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 977

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/530 (18%), Positives = 191/530 (36%), Gaps = 51/530 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN---RSFV---------ELWEIDLA 344
                 +       +       +AI      +   N   R F          +L+    A
Sbjct: 286 AIRARAESEDRFRSVFDQQFQFMAILTPEGRVIDINELVRRFQGYAREDFIGQLFWESPA 345

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           +       +   + L  A  +   L      +      + ++        P+G     ++
Sbjct: 346 WRDYPEWREIWPKRLAQATTMDGPLITHDIYQKRNGEIRMADAATTAIRGPDGAVRWYVI 405

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            +           + T +   E       +     +  + + V +  PDGR    N  F 
Sbjct: 406 QAT----------DTTERRRAEAALRESEERLRMLLRRIPDLVWLKDPDGRYLTCNARFE 455

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA--------AIITSFDDERKSLQG 516
           +L+   E  +   T    +    + ++  +D   + A         I+ + D  R+ +Q 
Sbjct: 456 TLFGRPEAEIIGKTDYDFVDRAQADFFRANDLAAIAAGGPRVNEEEIVFAGDGHRERIQV 515

Query: 517 TLELLSDSV--------LEYSIIPLPN-AQTMLTFVNVTDSVRAER--ALTEKNEALRKA 565
               + D+         +   I  +    Q +    +  + + AER   LT+      + 
Sbjct: 516 VKTPVHDADGTVIGVLGIARDITEMRRVEQELEQHRHHLEELVAERTEELTQARLEAERL 575

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K  F+ ++S+E+R+P+  ++G   LL+      L  +  +    I  S   LL+++N
Sbjct: 576 AQSKGEFLANMSHEIRTPMNAVLGLAYLLERQ---PLPDEAHELARQIHRSGQSLLHIIN 632

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + +++G +++      L ++L+ +   + T   +  I + +     L  S V D 
Sbjct: 633 DILDFSKIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAIDLVIRPPEDLESSLVGDP 692

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            RL QI   + SNA+ F+S G   V +++   +       F+V++ G  I  +    +F 
Sbjct: 693 LRLGQILINLTSNAVKFTSDGQVEVRVESIARSHTEVTLRFTVRDTGIGIDPETQAHLFQ 752

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F        RR  G GLGL I      L GG + + S     +T    +
Sbjct: 753 PFTQADASTTRRFGGSGLGLVICRRLAELMGGRLGLDSVPGEGSTFWLEL 802



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 12/153 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TET 228
             ++  E       L       ++L   +  LVW +D  G  L  N  ++        E 
Sbjct: 406 QATDTTERRRAEAALRESEERLRMLLRRIPDLVWLKDPDGRYLTCNARFETLFGRPEAEI 465

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-- 286
            G      +  ++  F        I++     N  E V     G+ +  ++V+       
Sbjct: 466 IGKTDYDFVDRAQADFFRANDLAAIAAGGPRVNEEEIVFA-GDGHRERIQVVKTPVHDAD 524

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYEILHNL 315
               G  GIA D+++   V  +L      L  L
Sbjct: 525 GTVIGVLGIARDITEMRRVEQELEQHRHHLEEL 557


>gi|153808539|ref|ZP_01961207.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
 gi|149128861|gb|EDM20078.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
          Length = 622

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/552 (22%), Positives = 220/552 (39%), Gaps = 64/552 (11%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E GN K Y I    +    A      S    + +     + I  N+ V I +++++  
Sbjct: 105 TDEAGNTKIYGIAETQDGPHMA------SAYQALQNSERILHNIYKNIPVGIELYNKDGL 158

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           L   N+  +E++ I           D L   L     LPE++     K+ + +   +  T
Sbjct: 159 LIDLNKKELEMFHI-------ASKEDVLGVNLFENPLLPEEI-----KQKLRNNEDADFT 206

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT-----------------VQVDLETKYN 430
               +   NG        S   GG+I +   +T                  + +    YN
Sbjct: 207 FCYEFSKING-----YYQSQNSGGSIDLTTKVTTLYDHNHEPINYLVINVDKTENTIAYN 261

Query: 431 TLVKV---QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            + +         D+   G A F       LS   +             GT +  I    
Sbjct: 262 KIQEFKNFFDLVGDYAKVGYAHFDA-----LSRDGYALSSWYRNVGEKEGTPLPEIIGIH 316

Query: 488 SRYYNESD--GWDLFAAIITS------FDDERKSLQGTLELLSDSVLEYSIIPLPNA-QT 538
           S ++ E      D    +I         D   +   G       +VL  + +P  N  + 
Sbjct: 317 SHFHPEDRAVMLDFLDKVIKGESSKLCRDMRIRRADGNYTWTRVNVLVRNYLPQDNIIEM 376

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    ++T     ER L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ +L+   
Sbjct: 377 LCINFDITQLKETERMLIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSMLQE-- 434

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ QYV  I  ++  LL L++DILDL+ ++AG     +  +    L NE+ Q++
Sbjct: 435 -ADNPEEKLQYVTIIEENNKRLLQLISDILDLSKIEAGTFDFTFEKVNAKRLCNELYQAM 493

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +     + +++  D       +D+ RL Q+ S  + NA+ F+S+GS + +       +
Sbjct: 494 QMRTSP-QVELRLSPDLPDLQLTSDKSRLYQVLSNFVVNALKFTSEGS-ITISYQIKGKE 551

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             FSV++ G  I  +   +VFNRFV   +     G GLGLSI +S I   GG + + S  
Sbjct: 552 AKFSVEDTGIGIEPEKQTAVFNRFVKLNNF--IPGTGLGLSICQSIITQLGGKIGVDSEP 609

Query: 779 EGVTTINCRIPS 790
              +      P 
Sbjct: 610 GKGSCFWFTHPL 621


>gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 594

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/393 (22%), Positives = 166/393 (42%), Gaps = 27/393 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T++  G     F  +  Q+       +   +     +  +++GV  F  DG I ++NP
Sbjct: 225 ILTNDEVGELAMAFNQMGRQLKFNMNALSQEKEQLASILSGMADGVITFNRDGTILITNP 284

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 ++    L     I N           S   +LF   + +  ++   +      +
Sbjct: 285 PAERFLQSWFYELD---DIENNTEEV-----PSKVMELFQLAVNTEKEQIGEIS-----I 331

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                   + PL N + +   V V   +  ER L          D+++N F+ +VS+ELR
Sbjct: 332 QGRSWVIIVSPLYNNKYIRGAVAVIRDMTEERKL----------DKLRNDFIANVSHELR 381

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +     G+ + ++ +    I   S  +  LVN++LDLA ++AG ++L 
Sbjct: 382 TPISMMQGYSEAIVDDIAGT-DEEKKEMASVIYDESLRMGRLVNELLDLARMEAGHIQLT 440

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +N  L  + +       E  I ++     K      D  R+ Q+ + ++ NA+  
Sbjct: 441 MEETEVNSYLQRIIRKFQGLAKEKEISLEHDLQSKGVPIQIDPDRIEQVMTNLIDNAIRH 500

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           + +   V +    D       V+++GS IPE+    VF RF        R   G GLGL+
Sbjct: 501 TPQNGEVKVLERSDERGLFIEVRDSGSGIPEEDLPFVFERFYKADKARTRGRSGTGLGLA 560

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I ++ I  H GH+++ S     TT +  IP  E
Sbjct: 561 IAKNIIEAHKGHITVQSKTGHGTTFSIFIPRNE 593


>gi|239906656|ref|YP_002953397.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796522|dbj|BAH75511.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 788

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 111/622 (17%), Positives = 221/622 (35%), Gaps = 64/622 (10%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
            E    +     +R++  +E   R   +              +  ++ +  +  +  +  
Sbjct: 157 DEEADLEAMAAYAREIGADEAAFRAALAEVPRMPLARFEKICQALHHFANHLSTLAVANF 216

Query: 288 EAGIAID--VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           E    ID     + ++  +     EI+  L       D++  + F N++   L  I  A 
Sbjct: 217 EQAWRIDELRQAQASIKARDRSFSEIIEFLPDPAFAVDRDGRVTFWNKALERLTGIAAAD 276

Query: 346 LATNPSN-----------DELLEFLRSANKLPEQLNW--KTWKENIFSVYKSSETHKDTW 392
           +                   LL++ R A  +P+            I +    +       
Sbjct: 277 MLGKGDFAYGAAFYGQPTPLLLDYARGAVSMPDPRYQVADMAPGEIIAEVTLTAMPGGLR 336

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           H+   + + +   S    G I    ++T +   E        +    ++   EGV V+  
Sbjct: 337 HVW-AKAVALYDESGQVNGAIEAIRDVTDRERREAALRQSEAMFRGIVETAHEGVWVYDV 395

Query: 453 DGRIKLSNPAFRSLWKTEENRL----------------------SPGTHIRNIAATCSRY 490
           +      N     +     + L                             ++   C   
Sbjct: 396 NYDTTFVNKRMADMLGYASHELLGRNLTEFLPPESQQRAARQQQRRRDGFSDVFEQCIER 455

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSD----SVLEYSIIPLPNAQTMLTFVNVT 546
            + +  W L +A  +   DE  +  G+L + SD      +E  +                
Sbjct: 456 RDGTMLWVLISA--SPLQDEHGNFAGSLGMFSDLSAVKAVEAELRAHRQRLEEEVEERTR 513

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--------- 597
           +       L E N  L + D +K++F+  VS+ELR+PLT+I+GF  L+            
Sbjct: 514 ELREQAMELAEANIRLSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGREFGEHFSPLA 573

Query: 598 ----KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                L +   + +  +  +   +  L  L+ND+LDL  +++G M+     I    +L++
Sbjct: 574 GDNPALAARGKRIAHNLGVVYGEAERLTRLINDVLDLNRIESGNMQWRDQCIDPVAVLHQ 633

Query: 654 VKQSIA-TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             QSI         IR + ++       + D  +L+Q+ + +L NA+ F+ +G  V L+ 
Sbjct: 634 AVQSIEGLLAQRPEIRFRFLAHTSAPPLLMDPDQLVQVIANLLQNAVKFTERGEVV-LEV 692

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-----RGQRRGVGLGLSIVESFINL 767
             +    + +V++ G  IP D  +S+F+RF              +G GLGL+I    +  
Sbjct: 693 RAEAEAVLMTVRDQGVGIPADQLESIFDRFHQVGRGDTIVSPTIKGTGLGLAICRQIVRH 752

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           +GG +   S     +  + R+P
Sbjct: 753 YGGRIWAESRLGEGSAFHVRLP 774



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 44/286 (15%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV------- 232
           E       +      F  + + L    +  D+ G + + N + ++ T             
Sbjct: 224 ELRQAQASIKARDRSFSEIIEFLPDPAFAVDRDGRVTFWNKALERLTGIAAADMLGKGDF 283

Query: 233 --FQKAIGESRKLFKE---------EIKKRMISSSALEKNFCETVSTLEHGNNKSY-KIV 280
                  G+   L  +         + + ++   +  E     T++ +  G    + K V
Sbjct: 284 AYGAAFYGQPTPLLLDYARGAVSMPDPRYQVADMAPGEIIAEVTLTAMPGGLRHVWAKAV 343

Query: 281 RVLNSFGEAGIAI----DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
            + +  G+   AI    DV+        L  +      I+      + ++D N    F N
Sbjct: 344 ALYDESGQVNGAIEAIRDVTDRERREAALRQSEAMFRGIVETAHEGVWVYDVNYDTTFVN 403

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           +   ++       L        L EFL   ++       +  ++    V++     +   
Sbjct: 404 KRMADMLGYASHELLGR----NLTEFLPPESQQRAARQQQRRRDGFSDVFEQCIERR--- 456

Query: 393 HLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNT 431
              +G  L V+++++P         G++ MF +L+    +E +   
Sbjct: 457 ---DGTMLWVLISASPLQDEHGNFAGSLGMFSDLSAVKAVEAELRA 499



 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 49/144 (34%), Gaps = 14/144 (9%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ +   +   L    ++F+ + ++    VW  D   D  + N   K+  +  G    +
Sbjct: 360 RDVTDRERREAALRQSEAMFRGIVETAHEGVWVYDVNYDTTFVN---KRMADMLGYASHE 416

Query: 236 AIGESR-KLFKEEIKKRMISSSALEKNFCETV--STLEHGNNKSYKIVRVLNS------- 285
            +G +  +    E ++R        ++    V    +E  +     ++   +        
Sbjct: 417 LLGRNLTEFLPPESQQRAARQQQRRRDGFSDVFEQCIERRDGTMLWVLISASPLQDEHGN 476

Query: 286 -FGEAGIAIDVSKEITVNDQLTHT 308
             G  G+  D+S    V  +L   
Sbjct: 477 FAGSLGMFSDLSAVKAVEAELRAH 500


>gi|300690102|ref|YP_003751097.1| sensor protein [Ralstonia solanacearum PSI07]
 gi|299077162|emb|CBJ49788.1| Sensor protein [Ralstonia solanacearum PSI07]
          Length = 995

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/592 (20%), Positives = 223/592 (37%), Gaps = 61/592 (10%)

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE--HGNNKSYKIVRVLN 284
             +     +A+    +L       RM   + +      T++ L   HG  +     R   
Sbjct: 39  HAQADDATRALQHMGQLLMPSASARMAKCAPVVAILLWTLAVLSIRHGQLRRENQRR--- 95

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
                        E  +  QL     +L +L   +A  D        N +F  L+     
Sbjct: 96  ----------RHAEAALARQLDFQRMLLESLPFPLAAQDTQHRYVAVNAAFCNLFGQPRE 145

Query: 345 -FLATNPSNDELL-----EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW----HL 394
             L   P++  L        ++  ++        T +E   +     E     W    H 
Sbjct: 146 TMLGRTPTHLGLCCAHTTARVQDIDRRAAAAGQDTREELTITAADGRERRVLYWVAPFHQ 205

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF---- 450
           P+GQ           GGT+    +++   + + +     +   + I+ L   V  F    
Sbjct: 206 PDGQP----------GGTVAALIDISELREAQERAEQRARRLRDIIESLPALVCQFEIRP 255

Query: 451 ---GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                  R    N        T E R+   +  R +     R   ++      AA +T  
Sbjct: 256 GTARSRMRHMAGNARETLGVPTGEERVRLPSPARLVHQDDRRRMRDAARQS--AAQLTLL 313

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA----LTEKNEALR 563
           D + + + G   +     L     P         +      V  ERA    L    +A  
Sbjct: 314 DQQFRHVDGDGLV---RWLHARARPRREPDGRTVWNGYLYDVTVERAQADALEAARQAAE 370

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A   K+ F+  +S+E+R+P+  ++G  +LL+ ++   L  +Q + V     S   LL++
Sbjct: 371 SALRAKDRFLAMMSHEIRTPMNGVLGLVELLQRTR---LEREQQRMVTLAQESGRALLHI 427

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           ++D+LD A ++AG + +  +   L +L +     +A++ HE ++ ++V  D  +  +   
Sbjct: 428 LDDVLDHAKIEAGHLAITPAPTDLRELFDSTVGLLASRAHERSLAVRVDVDATVPATVSV 487

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+ S +LSNA+ F+ +GS  +    ++AA D    I  V + G  I  +   ++
Sbjct: 488 DSMRLRQVLSNLLSNAIKFTERGSVRLSAACVEAAADTVRLIIRVSDTGIGIAPEAQATL 547

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  FV    R   R  G GLGL+I      L GG + + S+    TT+  R+
Sbjct: 548 FTPFVQADSRTTHRHGGTGLGLAISRQLARLMGGSLDMDSTPGVGTTLTLRL 599



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/481 (13%), Positives = 138/481 (28%), Gaps = 44/481 (9%)

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
             + +   AT  L+  GQ     A  +      +   +  + A L I     +  E    
Sbjct: 37  SDHAQADDATRALQHMGQLLMPSASARMAKCAPVVAILLWTLAVLSIRH-GQLRRENQRR 95

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
                 L+  +   ++L +SL F +  +D     +  N ++       G   +  +G + 
Sbjct: 96  RHAEAALARQLDFQRMLLESLPFPLAAQDTQHRYVAVNAAF---CNLFGQPRETMLGRTP 152

Query: 242 KLFK---------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-----LNSFG 287
                         +   R  +++  +     T++  +    +    V           G
Sbjct: 153 THLGLCCAHTTARVQDIDRRAAAAGQDTREELTITAADGRERRVLYWVAPFHQPDGQPGG 212

Query: 288 EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                ID+S+    +     +     +I+ +L   +  F               +     
Sbjct: 213 TVAALIDISELREAQERAEQRARRLRDIIESLPALVCQF--EIRPGTARSRMRHMAGNAR 270

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG----QT 399
             L      + +   L S  +L  Q + +  ++               +   +G    + 
Sbjct: 271 ETLGVPTGEERV--RLPSPARLVHQDDRRRMRDAARQSAAQLTLLDQQFRHVDGDGLVRW 328

Query: 400 LHVIVTSN--PRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-- 453
           LH        P G T+W     ++TV+           +     +      +A+   +  
Sbjct: 329 LHARARPRREPDGRTVWNGYLYDVTVERAQADALEAARQAAESALRAKDRFLAMMSHEIR 388

Query: 454 -------GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
                  G ++L         +     L+     R +        + +       AI  +
Sbjct: 389 TPMNGVLGLVELLQRTRLEREQQRMVTLAQ-ESGRALLHILDDVLDHAKIEAGHLAITPA 447

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
             D R+    T+ LL+    E S+    +    +      DS+R  + L+       K  
Sbjct: 448 PTDLRELFDSTVGLLASRAHERSLAVRVDVDATVPATVSVDSMRLRQVLSNLLSNAIKFT 507

Query: 567 E 567
           E
Sbjct: 508 E 508


>gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 573

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 163/379 (43%), Gaps = 13/379 (3%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS---PGTHIR 481
            +              +  S G+ +     +I  +NPA   +   +   L       +I 
Sbjct: 196 AQEALRKSEAQFRAIFELSSIGIGLVDMKAQIVDANPALCQILGYQREELCGKSFTDYIS 255

Query: 482 NIAATCSRYYNESDGWDLFAAIITS---FDDERKSLQGTLELLSDSVLEYSIIPLPNAQ- 537
                  RY        + A         + ER  L     L+    L  S+IP  + + 
Sbjct: 256 QQRGDVERYKQLMTEICIDAQQRHEKPHLEIERAFLHRDGRLVWAR-LSVSVIPGSSGEP 314

Query: 538 --TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +    ++T+  + E  L     A       K+ F+  +S+ELR+PL  I+G + LL+
Sbjct: 315 EYFLAIIDDITERKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQ 374

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +GSLN KQ +Y+  I +S   LL L+NDILDL+ V+AG  +L    +++ D+ N+V 
Sbjct: 375 QEIVGSLNEKQQEYINCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVL 434

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            ++  +     +++    D +    +AD +R+ Q+   +L+NA+ F+S G  V L   R 
Sbjct: 435 LTVRDRAISKGLKLTQEIDPEANICIADDRRIKQMLLNLLTNAIKFTSVGE-VSLIVKRV 493

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
                F + + G  I  +    +F  F     R   Q  G GLGL++      LHGG V+
Sbjct: 494 PEGINFIISDTGIGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVT 553

Query: 774 ISSSDEGVTTINCRIPSKE 792
           ++S+    +     +P +E
Sbjct: 554 VTSTVGVGSQFTLFLPDQE 572



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 43/152 (28%), Gaps = 14/152 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            +  +         I    ++ I + D    +   N +  ++       L          
Sbjct: 196 AQEALRKSEAQFRAIFELSSIGIGLVDMKAQIVDANPALCQILGYQREELCGK----SFT 251

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLH----VIVTSNPR 409
           +++       E+      +  I +  +  + H +    +   +G+ +     V V     
Sbjct: 252 DYISQQRGDVERYKQLMTEICIDAQQRHEKPHLEIERAFLHRDGRLVWARLSVSVIPGSS 311

Query: 410 G---GTIWMFENLTVQVDLETKYNTLVKVQGE 438
           G     + + +++T +   E K          
Sbjct: 312 GEPEYFLAIIDDITERKQTEMKLRASQAAAEA 343


>gi|255526178|ref|ZP_05393098.1| multi-sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296185072|ref|ZP_06853482.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255510161|gb|EET86481.1| multi-sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296049906|gb|EFG89330.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 606

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 167/398 (41%), Gaps = 25/398 (6%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + + E +T +   E       +    +I+     V ++  DG I   N  +  +      
Sbjct: 182 VMLEEEITERTKTEEALRESERQFRYSIEEAPVPVMIYAEDGEIMNINKTWEIITGYTIK 241

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-- 530
            +   +    ++          +     A I+ SF++ R   + +++  S  V  ++   
Sbjct: 242 DIPIASEWGKVSDIF------KEDSQCSANILYSFEEGRNDGEYSVKTKSGYVRIWNFYS 295

Query: 531 -----------IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                      I +  A  +    ++ +  ++      +   +++ D IK  F  ++S+E
Sbjct: 296 GYIGRLSDGRNIIIRVAMDITEKKHMEELQKSIEKERMRLLEIKEYDRIKTDFFANISHE 355

Query: 580 LRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           LR+P+  I     +    LK          + +Y+  +  +   LL LVN+++D+  +D+
Sbjct: 356 LRTPINVIFSAIQVHKLKLKDCNFNDNFPDKYKYINIMEQNCYRLLRLVNNLIDITKIDS 415

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G + +N     +  L+ ++  S+A  +    + +   +D +      D +++ +I   +L
Sbjct: 416 GYLVINEINCDIVSLIEDITLSVADYIENKGLSVVFDTDIEEKIIACDPEKMERIILNLL 475

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRG 753
           SNA+ F+ +G ++ +            VK+ G  IP++   S+F RFV        +  G
Sbjct: 476 SNAVKFTLRGGSIFVNIENGTESICIRVKDTGKGIPKEKLDSIFERFVQVDKSLTRENEG 535

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G+GLS+V++ + LH G +S++S +   +     IP K
Sbjct: 536 SGIGLSLVKALVELHEGTISVNSKEGYGSEFIIHIPCK 573


>gi|220907213|ref|YP_002482524.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863824|gb|ACL44163.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1965

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 131/814 (16%), Positives = 286/814 (35%), Gaps = 91/814 (11%)

Query: 50   SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
              A   +E    L+    Q   +  L  EN    ++W   DET  ++G    +       
Sbjct: 1021 QAALHQSEERLSLALRSAQAGMWQWLKAENR---MIWS--DETFRMLGYEPGQCSASH-- 1073

Query: 110  TDLLSFENWLKFHHYIKLSKATEKLRKEGQS----FDLVAETQNDCAIKIEGRVSGSCAF 165
                ++   +         +A ++   E       + +     +   +   G+V+   A 
Sbjct: 1074 ---QAWVQVVHPDDRAIAEQAVQRSLAENCPLYSEYRVCLPDGSIRWLADIGQVTYDEAG 1130

Query: 166  LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK- 224
             +  ++ GI  ++++      +     ++      +    +   D+    ++AN +    
Sbjct: 1131 DQTGTI-GIQIDISQRKQSELERERSEAILNAFLTASPIALTLLDRDLRFIYANEALAAV 1189

Query: 225  ----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSA-LEKNFCETVSTLEHGNN--KSY 277
                 +E  G   ++ +      F   +++ + + +  L   F   V    +       +
Sbjct: 1190 NGLPLSEHLGRTLEEVVPTMAPQFGPMLRQIIATQTPVLNLEFSGEVQPGLYRQTIANHF 1249

Query: 278  KIVRVLNSFGEAGIAI-DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
             +          G+ + D+S+   V  +L  + E     L      +   +        +
Sbjct: 1250 PVCLPDGEVLGVGVTVTDISELKRVEAELRQSEERLSLALKAANQGLYDLNLQTGQAIVS 1309

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT- 391
              +  +   +   L    +   L + L   +       ++ +  N+ + Y+     +   
Sbjct: 1310 PEYARMLGYEPEELEE--TTARLRDRLHPDDLATVDRVYQEYVANLHTEYRVEFRQRTIT 1367

Query: 392  ----WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
                W L  G+ ++     NP    +    +++ +   E       +          E +
Sbjct: 1368 GGWVWILSIGKIVNWDQDGNPL-RMLGTHTDISDRKQAEQALQQHSERLNLLYQTTRELL 1426

Query: 448  AVFGPDGRIKLSNPAFRSL-----------WKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            +   P   + L N  F  L           +K           + N +        E   
Sbjct: 1427 SAKQP---LDLMNQLFERLSAQMQLHYYYHFKLCMREGRQQLRLMNYSGLSVEQAEEFAW 1483

Query: 497  WDLFAAIITSFDDERKS-----------------------------------LQGTLELL 521
             +L  ++      ER+                                    L GTL   
Sbjct: 1484 IELGQSMCGLVAQERRQIVLNQTDIAAHANAHKICLMGVSAYVGHPLIVNGQLLGTLSFA 1543

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            S +  +++   +   Q +   V +  +      +L ++ E L +A+ +K+ F+  +S+EL
Sbjct: 1544 SLTRTQFTPAEVNLLQAISEQVAIALERAELVASLEQQTEDLARANRVKDEFLAVLSHEL 1603

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            RSPL  I+G+T LL++        K ++ +  I  ++ +   L+ D+LD++ +  G M L
Sbjct: 1604 RSPLNPILGWTKLLQSQSFSP--DKAAKALATIERNAKLQAQLIEDLLDVSRILQGKMVL 1661

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            N +++ L  ++    +++        I+++ + + ++   + D  RL QI   +L+NA+ 
Sbjct: 1662 NVTSVNLGSVIEAALETVRLAAEAKAIQLETLMEPEIDPILGDPARLQQIVWNLLTNAVK 1721

Query: 701  FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
            F+ +G  V ++  R +      V++ G  I       VF+ F        R   G+GLGL
Sbjct: 1722 FTPQGGQVTVRLQRVDTFAQLQVQDTGKGISPAFLPHVFDYFRQEDGTTTRKFGGLGLGL 1781

Query: 759  SIVESFINLHGGHVSISSSDEG-VTTINCRIPSK 791
            +IV      HGG V+  S  EG   T   R+P +
Sbjct: 1782 AIVRHLTEQHGGTVAADSPGEGLGATFTIRLPLQ 1815



 Score = 91.5 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 76/627 (12%), Positives = 195/627 (31%), Gaps = 77/627 (12%)

Query: 38   IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIG 97
            ++  +L I QR  +           + +     +Y  L      +    D +        
Sbjct: 881  VLVSLLDITQRKQVE----------AALQASEERYRHLAEAMPQIVWTTDAQGLATYFNP 930

Query: 98   QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN----DCAI 153
              +    +   ++  L   N L      ++ +   +  + G S+++    +         
Sbjct: 931  NWYGYTGLTAAESMGLESPNALHPEDRDRVLQQWLQAVEAGTSYEIEIRLRRWDGVYRWF 990

Query: 154  KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQA 212
               G          I+S  G  +++ +       L        +   S    +W      
Sbjct: 991  LCRGLPVRD-PRGEIISWVGTNTDIDDQKHIQAALHQSEERLSLALRSAQAGMWQWLKAE 1049

Query: 213  GDILWANISYK-------KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
              ++W++ +++       + + +     Q    + R + ++ +++ +  +  L   +   
Sbjct: 1050 NRMIWSDETFRMLGYEPGQCSASHQAWVQVVHPDDRAIAEQAVQRSLAENCPLYSEYRVC 1109

Query: 266  VSTLEHGNNKSY----KIV--RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL---- 315
            +     G+ +      ++      +  G  GI ID+S+      +   +  IL+      
Sbjct: 1110 LP---DGSIRWLADIGQVTYDEAGDQTGTIGIQIDISQRKQSELERERSEAILNAFLTAS 1166

Query: 316  TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN----------PSNDELLEFLRSANKL 365
             +A+ + D++    + N +   +  + L+               P    +L  + +    
Sbjct: 1167 PIALTLLDRDLRFIYANEALAAVNGLPLSEHLGRTLEEVVPTMAPQFGPMLRQIIATQTP 1226

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
               L +    E    +Y+ +  +     LP+G+ L          G      +++    +
Sbjct: 1227 VLNLEFSG--EVQPGLYRQTIANHFPVCLPDGEVL----------GVGVTVTDISELKRV 1274

Query: 426  ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-HIRNIA 484
            E +     +     +   ++G+          + +P +  +   E   L   T  +R+  
Sbjct: 1275 EAELRQSEERLSLALKAANQGLYDLNLQTGQAIVSPEYARMLGYEPEELEETTARLRDRL 1334

Query: 485  ATCSRYYNESDGWDLFAAIITSFDDERKSLQ---GTLELLSDSVLEYSIIPLPNAQTMLT 541
                    +    +  A + T +  E +      G + +LS   +          + + T
Sbjct: 1335 HPDDLATVDRVYQEYVANLHTEYRVEFRQRTITGGWVWILSIGKIVNWDQDGNPLRMLGT 1394

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              +++D  +AE+AL + +E L    +     +       + PL       DL+       
Sbjct: 1395 HTDISDRKQAEQALQQHSERLNLLYQTTRELLSA-----KQPL-------DLMNQLFERL 1442

Query: 602  LNSKQSQY---VEYISASSTILLNLVN 625
                Q  Y    +         L L+N
Sbjct: 1443 SAQMQLHYYYHFKLCMREGRQQLRLMN 1469



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/481 (12%), Positives = 138/481 (28%), Gaps = 49/481 (10%)

Query: 94   EIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153
            +++G      D  +++  L   E W       +L+    +L      + L  ET      
Sbjct: 588  QLLGVAIDITDRKRSEQALQESEAW------TRLAAQVAQL----GGWRLHLETNLVEID 637

Query: 154  KIEGRVSGS--CAFLRILSLDGIYSELAETTLKCKKLSNHISVFK-VLFDSLDFLVWHRD 210
            +  G++ G      L  L +       A+       ++  +      ++++   +VW   
Sbjct: 638  QRMGQIWGEPENTVLLPLPIVLERIHPADRERVTHAVTAALDPQSLGVYETEYRIVW--- 694

Query: 211  QAGDILWANISYKKNTETEGIVFQKA--IGESRKLFKEEIKKRMISSSALEKNFCETVST 268
            + G   W     +   E EG   +     G +  +   +  +  +++      +     +
Sbjct: 695  KDGSERWVLAKGQARFEGEGTARRTVDFFGTALDITDRKQAEAALAAQEQRYRYIFESVS 754

Query: 269  LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
            +         +   +N    +GI             L    E +  +  ++ I D     
Sbjct: 755  VAIWEEDFSAVKAAINQLQGSGI-------EDFAQYLAEHPEFVRQMASSVRIHD----- 802

Query: 329  QFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
               N++ ++++   D A L +  S +++         +PE       +    +  K+   
Sbjct: 803  --VNQAALQMFGAKDKAELLS--SLNQIF--------VPETEAAFIGELLAIAEGKTYFA 850

Query: 388  HKDTWHLPNGQTLHVIVT------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
             +       G+ L V  T      S P    +    ++T +  +E       +      +
Sbjct: 851  AETVVQTLQGERLRVWFTITFPSASQPYDHVLVSLLDITQRKQVEAALQASEERYRHLAE 910

Query: 442  HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
             + + V      G     NP +                   +         +     + A
Sbjct: 911  AMPQIVWTTDAQGLATYFNPNWYGYTGLTAAESMGLESPNALHPEDRDRVLQQWLQAVEA 970

Query: 502  AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                  +   +   G         L            + T  ++ D    + AL +  E 
Sbjct: 971  GTSYEIEIRLRRWDGVYRWFLCRGLPVRDPRGEIISWVGTNTDIDDQKHIQAALHQSEER 1030

Query: 562  L 562
            L
Sbjct: 1031 L 1031



 Score = 46.5 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 86/283 (30%), Gaps = 30/283 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNR-------YLQFHNRSFVELWEIDLAFLATNP 350
           +     +L    +++ N  V + ++            L   N +       D   +    
Sbjct: 341 QQAAAQRLQIYSDVVGNAQVGMVVWQLEDWQDPGSFRLLLANPAASAATGFDFEPVIGRT 400

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ---TLHVIVTSN 407
             +     L    + P   ++        S+     ++ +     +G       +     
Sbjct: 401 MAESFPHLL----QTPLVQHYLDVVHTGRSLDLGEVSYSE-----DGIATGIYSLKAFPL 451

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSL 466
           P       FEN+T +  +E++     +   +  + +   V V    + R   +N      
Sbjct: 452 PGHCLGLAFENITPRKQIESQLQESQRFNQQIAEAMPGVVFVHDLVEQRNVYTNRQITDF 511

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-----ERKSLQGTLELL 521
                 ++       N  AT     +       FAA   + DD     E ++     E  
Sbjct: 512 LGYTSEQVQAMG--ANAIATLIHPDDLEQILSYFAAFQHAADDVVLGIEYRAHHANGEWR 569

Query: 522 ---SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
              S SV+    +     Q +   +++TD  R+E+AL E    
Sbjct: 570 WMYSQSVVFNRTVDGIPRQLLGVAIDITDRKRSEQALQESEAW 612


>gi|296121939|ref|YP_003629717.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296014279|gb|ADG67518.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 823

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/634 (16%), Positives = 212/634 (33%), Gaps = 67/634 (10%)

Query: 214 DILWANISYKKNTETEGIVFQK----AIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
           D+++AN +Y++    +           I E        +     +               
Sbjct: 35  DVIYANFAYEEMMSCQQAEITGKRLCEIHEGCWNRSALLSSLQNTCHGDRLEQIIVEHND 94

Query: 270 EHGNNKSYKIVRVLNSFGEAGIA-----IDVSKEITVNDQLTH----TYEILHNLTVAIA 320
            +G+N+S+++   +   G + +       D+S    +             +L +   AI 
Sbjct: 95  SNGSNRSFEVHHRVAQLGTSRLCHLLSFRDISIIRQLEGAYKRSEARHQALLDSAVDAIV 154

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           I +    ++  N +   L+      +     N      L  +    E  N+         
Sbjct: 155 IINTRGAIKAFNPAAERLFGFSSDEVLGLNVN-----MLMPSPYQQEHDNYLKRYLETKE 209

Query: 381 VYKSSETHKDTWHLPNGQTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                   +      +G    +      VT       +    ++T     E         
Sbjct: 210 RRVIGIGREVIGKRKDGTVFPMNLSISEVTDGEERLFVGTVRDITHSKRTEEALRDSEAR 269

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +    + +      G IK  N A + ++    + +  G ++R +     R  ++  
Sbjct: 270 VRAILGTAVDAIITIDESGLIKSLNSAAQKMFGYSHHEM-IGENVRMLMPDPYRGEHDGY 328

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFVNVTDSVRAE 552
                           +   G     S   +E S+  +             ++T+  R E
Sbjct: 329 LQKYQQTGTRRVIGIGREAVGRRRDGSTFPMELSVSEVRQGSRRYFTGIVRDITERKRYE 388

Query: 553 RALTEKNEA----------------------------LRKADEIKNSFVQHVSYELRSPL 584
             L E  E                                A+  K+ F+ ++S+E+R+P+
Sbjct: 389 ARLRESIEESSRSQARLKIQAEELAQQATSLSEARKSAEAANRAKSDFLANMSHEIRTPM 448

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I+GF + +  S     +    + +  I  +   LL L+NDILD++ +++G+ ++  +T
Sbjct: 449 TAILGFAEQVSASLNRPED---CEALSIIRRNGEHLLKLINDILDISKIESGLFEIEKTT 505

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L  L++++ QSI  K  +  I + V     +   +  D  RL Q    +LSNA+ F+ 
Sbjct: 506 CDLRVLIHDLMQSIGPKAAQKKIGLTVNFATNVPVCIETDVLRLKQSLMNLLSNAVKFTE 565

Query: 704 KGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           +G  V L                 + + G  I  +    +F  F        RR  G GL
Sbjct: 566 QGG-VDLSVRMTEEFTTAPRIQMQICDTGIGIAAEHLDKLFIPFSQADTSVSRRFGGTGL 624

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GL+I +  I L GG + + S     ++    +P+
Sbjct: 625 GLAISKRLIELMGGDLQVKSILGSGSSFTITLPT 658


>gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 589

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 156/371 (42%), Gaps = 22/371 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D+              I+ +  G+ +    G + L N A++  +  +        +   I
Sbjct: 234 DMTKAQEMQQDRLRTLIESMGSGLILIDGRGYVNLINRAYKETFDADPGEYLYRLYYEAI 293

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                      +  ++   I   F  E    +  L  L+   +E     +  A  +    
Sbjct: 294 -----------EQKEVVTMIEEIFMTEVSVRKQILLPLT---IERRHFEVYGAPIIGVN- 338

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              D  +    +      L+K ++++  FV +VS+EL++P+T+I GF++ L    +   +
Sbjct: 339 ---DEWKGIVLVFHDITELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAMNDKD 395

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +    ++  I   S  L +L+ D+LDL+ ++    +LN   + +N+LL E+   +  K  
Sbjct: 396 T-LEYFLSIILKESDRLQSLIEDLLDLSKIEKQGFRLNPQYLEINELLEEIFVILEGKAR 454

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I + +    K     AD  R+ Q+F  +++NA+ ++  G  V +K    + + +  V
Sbjct: 455 EKEIDLVLSKPKKELYLFADASRIKQVFINLINNAIAYTPAGGEVKVKVEEVDKEVVIVV 514

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  + +D    +F RF            G GLGL+IV+  +  H G +S++S     
Sbjct: 515 SDTGIGMEQDEIPRIFERFYRVDKARSRNSGGTGLGLAIVKHIVEAHHGSISVTSELNKG 574

Query: 782 TTINCRIPSKE 792
           T    ++ SKE
Sbjct: 575 TAFTVKL-SKE 584



 Score = 40.7 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 8/130 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                Q      ++ ++   + + D   Y+   NR++ E ++ D          + + E 
Sbjct: 237 KAQEMQQDRLRTLIESMGSGLILIDGRGYVNLINRAYKETFDADPGEYLYRLYYEAI-EQ 295

Query: 359 LRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                 + E    + + ++ I         H + +  P      +I  ++   G + +F 
Sbjct: 296 KEVVTMIEEIFMTEVSVRKQILLPLTIERRHFEVYGAP------IIGVNDEWKGIVLVFH 349

Query: 418 NLTVQVDLET 427
           ++T    LE 
Sbjct: 350 DITELKKLEQ 359


>gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 593

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q++      N   +     +  +++GV     DG I ++NP
Sbjct: 221 ILTQDEIGELAIAFNQMGRQLNFHINALNQEKEQLSNILSSMADGVITINIDGTILVTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +      +            +  +LF   +++  ++ + ++ TL+  
Sbjct: 281 PAERFLQAWYYEQNMNIKEGDNLP--------PEAKELFQNAVST--EKEQMIEMTLQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S  +L   + PL     +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 SWVLL---MSPLYAESHVRGAVAVLRDMTEERRL----------DKLREDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +    + S   ++ +  + I   S  +  LVND+LDLA +++G   L+
Sbjct: 378 TPISMLQGYSEAIVDD-IASTEEEKKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLH 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y T+ L++ L ++ +  +    E  + +           V D  ++ Q+F+ ++ NA+  
Sbjct: 437 YETVNLHEFLEKISRKFSGVAKEKGVSLTEDIAVSQPECVFDEDKMEQVFTNLIDNALRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +  G +V + A          +K++GS IPE+    +F RF        R   G GLGL+
Sbjct: 497 TESGGSVHIAAQTVKDGLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV++ +  HGG +++ SS +  T     IP+K
Sbjct: 557 IVKNIVEAHGGSIAVHSSIDKGTAFTFYIPTK 588


>gi|170741220|ref|YP_001769875.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195494|gb|ACA17441.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1596

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 135/729 (18%), Positives = 259/729 (35%), Gaps = 61/729 (8%)

Query: 99   LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG----QSFDLVAETQNDCAIK 154
            L   +   +  T  +    W          +   +L + G    +         N   ++
Sbjct: 621  LPPELMAGKPTTHEVLEHQWRSGEFAGA-EEEVRRLMRAGGIVPEPHTYTRVRPNGTVLE 679

Query: 155  IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ--A 212
            I          +R       Y+++       + L    S  +++ +++  ++  R     
Sbjct: 680  IRTMPMAGGGLVR------TYTDITARRQAEEALRESESRHRLIAENVSDVITLRRAGGD 733

Query: 213  GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE---KNFCETVSTL 269
            G +L+ + + +         F     ES  L   E + R+ + +A     +    +V  L
Sbjct: 734  GALLYVSPAIRTVLGYAPEDFAARPAES--LLHPEDRDRVAAVTAAIDAARPTATSVHRL 791

Query: 270  EHGNNKSYKIVRVLN---SFGEAGIAI-----DVSKEITVNDQLTHTYEILHNL----TV 317
             H +     +   L      G  G  I     DVS+ +     +  +  +   L    + 
Sbjct: 792  RHRDGHWVFVETALTWMQGEGARGARILAAMRDVSRRVAAEAAVRESEMLYRLLAETTSD 851

Query: 318  AIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             I   D     Q+ + +   +        L   PS     + L +   L           
Sbjct: 852  VITRLDLGLAWQYVSPACRAVLGYEPEDLLRQRPSAVVHPDDLPALQDL---------AR 902

Query: 377  NIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRGG----TIWMFENLTVQVDLET 427
             + +   + E    T+   +G+   V     +      GG     +    ++T +   E 
Sbjct: 903  RLAAGEIAGEHVTTTFRTRHGRGGFVWTEAGLSLMRDEGGAPVSIVCSLRDVTARKAAEA 962

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                         ++ S+ +     D   +  +PA R +   E   +     +  +    
Sbjct: 963  ALEASEARYRFLSENGSDMIVQADRDSVRRYVSPACREILGYEPEEIVGTKPLDGVHPDD 1022

Query: 488  SRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  +           +   +R +   G+   +                 + +  +V+
Sbjct: 1023 RAALAATLADLAAGTRDVATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAEGYVASVRDVS 1082

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +  R   AL    +A  +A   K  F+  +S+E+R+PL  I+G+TDLL      SL   Q
Sbjct: 1083 ERQRQAEALELARDAAEQASRAKTDFLASMSHEIRTPLNGILGYTDLLLDDP--SLGGGQ 1140

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +  E I ++   LL +VNDILD + ++AG ++L+    +L+ LL+     +     +  
Sbjct: 1141 RRQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDALLDNTVSVVRGFARKKA 1200

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFI 720
            I + V  DG    + V D+ RL QI   +L+NA+ F+  GS V L  A ++         
Sbjct: 1201 IAVAVRLDGAAPRTLVGDQDRLRQILLNLLNNAVKFTHAGS-VTLAVACESPPGATACLR 1259

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
            F+V + G  IP D  + +F RF    +  +R   G GLGL+I ++ + L GG + + S  
Sbjct: 1260 FAVSDTGIGIPRDKHERLFQRFSQVDNSIRRDFGGTGLGLAISKNLVELMGGTIGVESVV 1319

Query: 779  EGVTTINCR 787
               TT    
Sbjct: 1320 SEGTTFWFT 1328



 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/533 (12%), Positives = 158/533 (29%), Gaps = 56/533 (10%)

Query: 74  SLLTENNCLTIV--W-DGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA 130
           +LL  +    +V  W D   + P +                  +    +      +  +A
Sbjct: 217 ALLGADGRPLVVHPWRDDGGDLPRLDLAAALPPGAEAGLVTEAADAQGVLRLVAYRRVEA 276

Query: 131 TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190
              +   G + +    + +   + + G    +     ++ L               +   
Sbjct: 277 LPLVAVVGLAREDALGSWHRQVLVLTGIALAALGLTWLIGL--------RLGRTLAQQRA 328

Query: 191 HISVFKVLFDSLDFLVWH----RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
             ++F+ +F++     +      D +  +   N +                         
Sbjct: 329 SETLFRAMFEAASEAQFICRLETDGSFRLEACNRAAAARLGAAPEALVGRPLGGALPAGR 388

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID-----VSKEITV 301
             +        L       +     G  + ++   VL    +    +D     + +   +
Sbjct: 389 VARIEADLRRCLAAGNPIRLQESGDGAGRVFE--EVLTPLRDEAGRLDRVLASIREITHL 446

Query: 302 NDQLTHTYEILHNLTVAIAI-------FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                 T E +  L +A  I        D        +R    +  ++    +  P+   
Sbjct: 447 KRAEAETREAVRRLLMAEEIAHVGHWRIDLRDDSMTWSREVFRIHGLEPG--SVAPTLAA 504

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSN----P 408
            L F           +      +I +   S +   D      P+G   HV+  +     P
Sbjct: 505 ALGFCH-------PDDRPAVAASIEAQIASKQPATDALRIVRPDGSIRHVVTRALCEFGP 557

Query: 409 RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            G    +F    ++T    +E +      +   T++ + +G+ V  P+GRI++ N    +
Sbjct: 558 DGAVAALFGTLSDVTELRRVEREAAEAASLLATTLESMDQGLIVVSPEGRIEICNARALA 617

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L       ++       +     R    +   +    ++ +     +    T    + +V
Sbjct: 618 LLGLPPELMAGKPTTHEVLEHQWRSGEFAGAEEEVRRLMRAGGIVPEPHTYTRVRPNGTV 677

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ-HVS 577
           LE   +P+     + T+ ++T   +AE AL        +  E ++  +  +VS
Sbjct: 678 LEIRTMPMAGGGLVRTYTDITARRQAEEAL--------RESESRHRLIAENVS 722


>gi|221198638|ref|ZP_03571683.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221181089|gb|EEE13491.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 763

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 103/502 (20%), Positives = 193/502 (38%), Gaps = 32/502 (6%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L+ L   +   D N  L + N +   L        A     D L    R   ++ 
Sbjct: 124 QFEALLNALPDGVIAADTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRV- 182

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--------RGGTIWMFEN 418
                 +  E+     +++   +       G+ + V  T+ P         G  + +   
Sbjct: 183 ----QTSALEHALGGTRTT-CERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLL--- 234

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
                  +       +V+   +D   + +     D RI   NPA + ++  +E       
Sbjct: 235 --RDASADRARADAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRR 292

Query: 479 HIRNIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSII 531
               IA    + +     +D    I+          D  R         +     +   +
Sbjct: 293 FDSLIAMRWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVAL 352

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +   +T         + R+ R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ 
Sbjct: 353 SITLRETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWI 412

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L+ S   +L   + Q ++ I  S+  L  +V DILD +++  G ++L+   + +  L 
Sbjct: 413 EVLRNSGDDTL---RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLF 469

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V  +  T      I ++  S         D +RL Q+ S ++SNA+ F+  G  V + 
Sbjct: 470 ADVVAAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVS 529

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            A D+   + +V + G  I  +    VF+ F          RRG+GLGLSIV   + LHG
Sbjct: 530 VAHDDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHG 589

Query: 770 GHVSISSSD-EGVTTINCRIPS 790
           G V + S+     TT   ++P+
Sbjct: 590 GTVVVDSAGRNRGTTFTVKLPA 611



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 12/162 (7%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT-ETEGIVFQKAIGESRKLFKEEIKKRMI 253
           F+ L ++L   V   D    + + N +              +A+ +  +L   + ++   
Sbjct: 125 FEALLNALPDGVIAADTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQT 184

Query: 254 SSSALEKNFCET---VSTLEHGNNKSYKIVRVLNSFGEAGIAID--------VSKEITVN 302
           S+         T      L     +   +        +A   +D         S +    
Sbjct: 185 SALEHALGGTRTTCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 244

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           D       ++     A+   D++  +   N +   ++  D  
Sbjct: 245 DAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEE 286


>gi|150018743|ref|YP_001310997.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905208|gb|ABR36041.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 920

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 131/663 (19%), Positives = 265/663 (39%), Gaps = 68/663 (10%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-S 240
             + ++L    ++  + +D++  L W  +  G I++ N   +   E  G   ++AIG  S
Sbjct: 242 KKQNEQLMMQANLLNLSYDAI--LAW--EINGSIIYWNKGAE---EKYGYNSEEAIGSIS 294

Query: 241 RKLFKEEIK---KRMISSSALEKNFCETV-STLEHGNNKSYK-----IVRVLNSFGEAGI 291
            +L K         + S+   +  +   +    + G+    +     IV           
Sbjct: 295 YELLKTTFPISFSSIKSTLLSDGIWHAEIEQIKKDGSKLLVETRLQLIVDENGKQIVLET 354

Query: 292 AIDVSKEITVNDQLTHTYE-----------ILHNLTVAIAIFDQ-------NRYLQFHNR 333
             D+++   +  +L    +           I+ N+   + + D        N+ ++ + +
Sbjct: 355 NRDITENKKMEKELQIQNQIIKQQKEELEIIIDNMADGLTVVDNCGKYRRTNKRVEEYTK 414

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET---HKD 390
            F  L +  +  +  +  + E+  +     K     ++ + K       K+      H D
Sbjct: 415 KFTSL-DKPVDKVGDSFESGEI--YYDEKGKCISLEDFPSMKVIRGEKVKNQRIIIKHGD 471

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
                +     V          I +  ++T QV+ E       ++    +D++ E + VF
Sbjct: 472 DASYFDFNATPVFDEIGEVSLGIIINRDVTEQVNYEKHIKEQKELFEAILDNMQESIYVF 531

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             +G+  + N   R  +  E   L  G  +  +         E +   +    I      
Sbjct: 532 DKNGKYIIKNKVARKRFSGEFKELGEGYKVTELYDL------EGNKMPIDETPIYRVKSG 585

Query: 511 RKSLQGTLELLSDSVLEYSII---PLPNA-----QTMLTFVNVTDSVRAERAL------- 555
                  ++   D +  Y+II   P+ +        +++F++VTD +++++ L       
Sbjct: 586 EIVRNNIVKFKKDDMEYYNIISGTPIYDNSGDFLYGVVSFLDVTDMIKSQQDLQEVQEKL 645

Query: 556 ----TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                EKNE L +A E+K+ F+  +S+E R+PL  I      L       +  K   Y+ 
Sbjct: 646 LAVEREKNEGLEQAMEMKDEFLSFISHEFRTPLNVINTAIQTLNLVYSNQMTEKIKAYMG 705

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++   L LVN+ILD+  V+AG + +N   I +  L   + +S+     +  +R+  
Sbjct: 706 TIKQNTNRQLRLVNNILDITRVNAGRITINKKNIDIVFLTKAITESVYEFASKKGVRLTF 765

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +S         D ++  +I   +LSNA+ F+  G ++I+       +    VK+NG  IP
Sbjct: 766 VSKLTKKIIGVDDEKYERIILNLLSNAIKFTPAGKSIIVNLHSAKTNICIEVKDNGIGIP 825

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +F RF  V ++   Q  G G+GLS+V+ F+   GG VS+ S+    TT    +P
Sbjct: 826 RNKIDVIFERFGQVESSLSRQAEGTGIGLSLVKRFVEALGGSVSVKSNLGKGTTFKILLP 885

Query: 790 SKE 792
           +++
Sbjct: 886 NEK 888



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 98/276 (35%), Gaps = 23/276 (8%)

Query: 318 AIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            IA+F   +  L   N++++    +D  F   N   + + + L    K     + +   +
Sbjct: 122 GIAVFSTPDITLLKANQTYLNF--LDKPF---NSIENSIGKKLNEIIKGWTGSSSEEVWK 176

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLH-VIVTSNPRGGT----IWMFENLTV----QVDLET 427
            + S  K   + +  +    G T     +      G     I +  ++T     +  +E 
Sbjct: 177 GVISTKKPFYSDEYIFEFERGVTYWEASLAPVFEDGILKYCIEITTDITEKVLDRKRMEE 236

Query: 428 ------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
                 K N  + +Q   ++   + +  +  +G I   N      +              
Sbjct: 237 QTKVIKKQNEQLMMQANLLNLSYDAILAWEINGSIIYWNKGAEEKYGYNSEEAIGSISYE 296

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +  T    ++      L   I  +  ++ K   G+ +LL ++ L+  +        + T
Sbjct: 297 LLKTTFPISFSSIKSTLLSDGIWHAEIEQIKK-DGS-KLLVETRLQLIVDENGKQIVLET 354

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             ++T++ + E+ L  +N+ +++  E     + +++
Sbjct: 355 NRDITENKKMEKELQIQNQIIKQQKEELEIIIDNMA 390


>gi|255523233|ref|ZP_05390204.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296186196|ref|ZP_06854601.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255513101|gb|EET89370.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296049464|gb|EFG88893.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 779

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/510 (17%), Positives = 197/510 (38%), Gaps = 49/510 (9%)

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +   +   D +  + F N +   +      + +    N+         N    +   K+ 
Sbjct: 21  MADGVIAVDMDGKIVFLNSAAEGITG----WSSKEAKNENFNTVFPLINISTGEKV-KSP 75

Query: 375 KENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLE 426
            +N+  + KS    K+      + +  ++   S+P         G + +F ++T    +E
Sbjct: 76  IDNVIKLGKSVGLTKNSGLITKDNRKKYISANSSPIKDDLGNFTGIVVVFRDITRIRSIE 135

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN---------PAFRSLWKTEENRLSPG 477
            +            + +  GV +   +  +   N            + + K   N     
Sbjct: 136 LELINKEHGFKALFNSVPVGVVILDENEIVYAVNNCVLKFLNIKKTQIIGKAVGNGFCCK 195

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE---------Y 528
               +       Y        L  AI  +   E+ ++   +E  +  V+E          
Sbjct: 196 NSFDD--ERGCGYGENCKSCSLRKAITFA---EKFNVSTNMEFNNVVVIENKEIEVWLKL 250

Query: 529 SIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           SI P+   +    +   +++ D    E  L +  E    A + K+ F+ ++S+E+R+PL 
Sbjct: 251 SITPVYFGEKRVIVAVLMDIKDRKNKEIELRKAKEEAEAASKAKSEFLANMSHEIRTPLN 310

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G  DL   + L  LN +Q + +    + +  LL ++NDILD + ++AG + +     
Sbjct: 311 GLVGMVDL---TLLTDLNCEQKENLMTAKSCTNSLLKVINDILDFSKLEAGKLVIENINF 367

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSK 704
            + +L+ E+ ++ ++      I +       +  F + D  RL Q+ + +++NA+ F+  
Sbjct: 368 DIKNLIEEIIKANSSTALAKQIELNYTFSSTIPQFLLGDPNRLRQVLNNLINNAIKFTEH 427

Query: 705 GSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           G   +    ++   ++    FS+ + G  I E+   ++F  F        R   G GLGL
Sbjct: 428 GEISLKVKNIETIDEHVKLEFSITDTGIGISEENINTIFESFSQVDGSSTRTVGGTGLGL 487

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I +    + GG++ + S     ++    +
Sbjct: 488 AISKQLTEIMGGNLLVKSKLGQGSSFYFVL 517


>gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1029

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 134/768 (17%), Positives = 280/768 (36%), Gaps = 99/768 (12%)

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE---- 137
             + W  + E   + G       + +   +     ++       ++ +A  +        
Sbjct: 2   RVLRWSPEAER--VFG-WSAAEVLGRRPNEW----SFTHPDDAAEVKRAIGQAITADGPT 54

Query: 138 ----GQSFDLVAETQNDCAIKIEGRVSGSC-AFLRILSLDGIYSELAETTLKCKKLSNHI 192
               G++F     T++   +  E     +     R++SL     +L       +      
Sbjct: 55  PPVIGRNF-----TRDGRLLHCEWHNRANRDPQGRLVSLLSFAKDLTRQLEAERARDLSE 109

Query: 193 SVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIVFQKA-IGESRKLFKEEIKK 250
           + +  +F++   ++   D   G IL AN + ++         Q   IG+   L  + +  
Sbjct: 110 ARYAHIFNNSHAVMLILDPESGRILDANPAAEEFYGWSRKTLQTMQIGDINTLSPQALLV 169

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG----EAGIAIDVSKEITVNDQLT 306
            + ++ A E+   E       G+ +  ++       G       I  D+++     + L+
Sbjct: 170 ELKAAHAEERKHFEFRHRRADGSVRDVEVHSGPTEDGNRSMVFSIVHDITERKQA-EALS 228

Query: 307 HTYEILHNLTV-AIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
             +E    L+   +A+ D  +  +   N ++           + +  + E L  +R    
Sbjct: 229 RRWERFFRLSNLGLAMHDVSDNTIIDVNATYA----------SQHGYSIEELRGMRIDEL 278

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSN----PRGGTIWMFE-- 417
            PE    +    ++    +      +T HL  +G  L +++        RG  +  F   
Sbjct: 279 YPED-EREQLHAHLAEADRIGNASFETVHLRKDGSRLPLVIGVTALLDDRGRAVARFAFG 337

Query: 418 -NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +++ +   E +   L +     ++   E + +      I+  N AF             
Sbjct: 338 LDISARKAAEDELRKLSR----AVEESPESIVITNTRAEIEYVNQAFID---------KT 384

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL----ELLSDSVLEYSIIP 532
           G           R            A + +     +S QG      +  S+ +   +I P
Sbjct: 385 GYSRAEAIGQNPRLLQSGRTTPATYADLWNTLTHGRSWQGEFFNRRKDGSEYLERVTITP 444

Query: 533 LPNAQTMLTFV-----NVTDSVRAERALTEKNEAL------------------RKADEIK 569
           + +    +T       ++T   R E  L   +E L                    A   K
Sbjct: 445 IHDESGHITHYVAVKQDITAQRRMEEELLRYHEHLEGLVESRTAELQHALDAANIASRAK 504

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+E+R+P+  +IG  D+L  S+   L+++Q + V  +  S+  LL L++DILD
Sbjct: 505 SEFLTTMSHEIRTPMNGVIGLLDVLSHSQ---LSTEQVEMVGIMRESAETLLRLIDDILD 561

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
            + +++G ++L+     + DL+  V   + T  +  ++R+    D  + + V  D  RL 
Sbjct: 562 FSRIESGNLELDVGPASIPDLIARVVGILQTVANRKSVRLSTRIDPDVPAVVRTDALRLQ 621

Query: 689 QIFSKILSNAMDFS---SKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QI   ++ NA+ FS    +   V ++      G   F V +NG  I  +  + +F+ F  
Sbjct: 622 QILGNLVGNAVKFSSGLDRPGRVEIRVETAGAGRIRFMVTDNGIGIAPEAIEKIFDPFSQ 681

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 RR  G GLGLSI    + +  G + ++S     +     +P 
Sbjct: 682 AESSTTRRFGGSGLGLSICTRLVRMMKGRMEVNSLPGRGSRFVVTLPL 729


>gi|218887627|ref|YP_002436948.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758581|gb|ACL09480.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 874

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/667 (18%), Positives = 227/667 (34%), Gaps = 77/667 (11%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSL--DFLVWHRDQAG---DILWANISYKKNTETEG 230
            ++       + L      ++ +F+       V+     G    ++  N  Y++      
Sbjct: 230 RDITAQRQAERALREAELRYRTIFEHSLDGISVYEHRDDGSAPRLVDCNRGYERMAGRTR 289

Query: 231 IVFQKA---IGESRKLFKEEIKKRMISSSALEKNFCETVSTL-EHGNNKSYKIVRVLNSF 286
              +           L   +  +       L        S L   G     + V V    
Sbjct: 290 DNLRDMDDVRRLQVYLGGRKPPEPFRDDGGLRGPQSAVYSWLRPDGRENWIESVSVPVRD 349

Query: 287 GE----AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           G+     GI  DVS+    E  +         +  +  + + I D +      NR F  L
Sbjct: 350 GDRVLVFGIGRDVSRRRKQEEALQQSEARFRAVFEHAPLGVFITDHDGSFVKTNRLFNVL 409

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
                A L     ++ +           E  + +     +    ++    +      +G 
Sbjct: 410 HGFAAAELPLGHFSELVYGH--------EAGDVRALFAELHRGERNGFFLETRHLRSDGT 461

Query: 399 TLHVIVTSNPRGGT-------IWMFENLTVQVDLE---------------TKYNTLVKVQ 436
              V +      G        + M E+++ +   E                +   L +  
Sbjct: 462 VFPVRLAVAAIRGRKADLQYAVGMLEDISERRAAEAELQGYRARLENMVLERTRDLEQAL 521

Query: 437 GET----------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           G            +  +SEG+ V  PD R+ L+NPA   +             + ++   
Sbjct: 522 GTAESHREKIDLILRSVSEGLLVTDPDHRVVLTNPAAEDILGLAAPGDLVAEAVADLIED 581

Query: 487 CS-RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              R        D        F   R +  G +   + S  E               V V
Sbjct: 582 APLRKRLVHCLDDTMGGAPCQFGFSRPTEAGGVHHYTASTSEVR----DAGGGRTGVVTV 637

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V +ER L          D +KN F+   ++ELR+PLT I+GF++LL T     L  +
Sbjct: 638 LHDVTSEREL----------DRMKNEFLTTAAHELRTPLTTILGFSELLVTGGDIPL-VE 686

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHE 664
           Q QY+ YI+  + ++  +V D+LD++ ++ G    L      L  L+       A  +  
Sbjct: 687 QRQYLGYINEQAALVSGIVADLLDISRIEMGQGFSLKRRPCDLVALIRRKVA--AHIVGT 744

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
                +++        V D  ++ Q+   +LSNA+ +S  G  V ++          SV+
Sbjct: 745 RRHSFRLLLPETPVPAVVDADKVAQVLDNVLSNAVKYSPGGGVVEVRLRPGQDAHEVSVR 804

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +NG  +  +    +F +F           G GLG+SIV+  I  HGG V++ S+ +  TT
Sbjct: 805 DNGMGMSPEQLSRMFEKFYRGDASNTGIPGTGLGMSIVKHLIEAHGGEVAVESAKDVGTT 864

Query: 784 INCRIPS 790
           +   +P+
Sbjct: 865 VRFTLPT 871



 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/450 (12%), Positives = 117/450 (26%), Gaps = 38/450 (8%)

Query: 143 LVAETQNDCAIKIEGRVSGSCAFLRILS-----LDGIYSELAETTLKCKKLSNHISVFKV 197
           +V    +      E    G+  +LR        +        +       L  H    + 
Sbjct: 83  IVLTGLSSPTFAEEAVARGAQDYLRKGEVAEGLIVRTIRYAIDRKRAEGALRQHRQRLET 142

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           +  +    +   D    + +AN +                G   +     ++   +    
Sbjct: 143 IISANPDGMLVVDADALVRFANPAALAMLGRGLPGVPDLPGLLGQPSPVPVRDDELDLCG 202

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILH 313
              N C  +  +             L S        D++ +      L         I  
Sbjct: 203 DGDNPC--LVEVRTAPVTWDDAPATLVSL------RDITAQRQAERALREAELRYRTIFE 254

Query: 314 NLTVAIAIFDQNR-----YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
           +    I++++         L   NR +  +       L        L  +L    K PE 
Sbjct: 255 HSLDGISVYEHRDDGSAPRLVDCNRGYERMAGRTRDNLRDMDDVRRLQVYL-GGRKPPEP 313

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGGTIWMF---ENLTVQV 423
                         +  ++   +W  P+G+   +   S P   G  + +F    +++ + 
Sbjct: 314 F-------RDDGGLRGPQSAVYSWLRPDGRENWIESVSVPVRDGDRVLVFGIGRDVSRRR 366

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E              +H   GV +   DG    +N  F  L       L  G H   +
Sbjct: 367 KQEEALQQSEARFRAVFEHAPLGVFITDHDGSFVKTNRLFNVLHGFAAAELPLG-HFSEL 425

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLT 541
                     +   +L       F  E + L   GT+  +  +V             +  
Sbjct: 426 VYGHEAGDVRALFAELHRGERNGFFLETRHLRSDGTVFPVRLAVAAIRGRKADLQYAVGM 485

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNS 571
             ++++   AE  L      L      +  
Sbjct: 486 LEDISERRAAEAELQGYRARLENMVLERTR 515


>gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1426

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 130/731 (17%), Positives = 238/731 (32%), Gaps = 134/731 (18%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ET 228
            +  E+         L     + + + D  ++ +   +  G I   N + ++       E 
Sbjct: 296  LEQEILHRQQVEASLREASRLQQAIVDGANYSIISANPEGIIQAFNRAAEQMLGYKAEEV 355

Query: 229  EGIVFQKAIGESRKL------FKEEIKKRMIS------SSALEKNFCETVSTLEHGNNKS 276
             G    + I + +++        +E+  ++        + A +    E + T    +  S
Sbjct: 356  VGKFTPEIIHDPQEIQTRAKELSQELGMKIEPGFEVLVAKARQGQKDENIWTYIRKDGSS 415

Query: 277  YKIVRVLNSF--------GEAGIAIDVSKEITVN-------DQLTHTYEILHNLTVAIAI 321
            + ++  + +         G  GI  D ++ +           +LT     L    + +AI
Sbjct: 416  FSVLLSITALYDDQGQISGFLGIGSDRTERLQTQKDLENTLRELTFQKSALDEAAI-VAI 474

Query: 322  FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
             +    +++ N  F +L +     L  N         +  ++  P       W       
Sbjct: 475  TNAKGVIKYVNDKFCQLSQYSREELIGNTH------RIVKSDHHPPDFFKHLWSTISQGK 528

Query: 382  YKSSETHKDTWHLPNGQTLHVIVTSNP----RG---GTIWMFENLTVQVDLETKYNT--- 431
                E    T    NG    V  T  P    +G     + +  ++T +  +E        
Sbjct: 529  IWQGEIKNKT---KNGSYYWVDTTIVPFLDVQGKPFQYLAIRFDITNRKYIEQALQKELK 585

Query: 432  ----LVKVQGETIDHL-SEGVAVFGPD--GRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                L ++  +  + L  + +     D  GR    N              +P   I  +A
Sbjct: 586  QTLLLKQISQKIRESLEPQQIFQTTADQVGRAFGVNRCL-----IHSYIPTPTPRIPIVA 640

Query: 485  ATCSRYYNESDGWDLFAA----IITSFDDER-------------KSLQGTLELLSDS--- 524
                  Y+   G D+  +      T    ER             KS+ G  E +      
Sbjct: 641  EYFQPEYDSMMGLDIPVSGNLHAETLLTTERAIASDNVFAEPQLKSVAGICEQMGSKSIL 700

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAER------------------------------- 553
             +  S    PN    L   +       E                                
Sbjct: 701  AIRTSYQGKPNGIIGLYQCDHFRHWTFEERELLEAIAAQVGIALAQAQLLEQERKQRSEL 760

Query: 554  -----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                 AL         A++ K+ FV  +S+E+R+P+  +IG T +L  + L  L   Q  
Sbjct: 761  ALKNIALEGAKREAEAANKAKSEFVAMMSHEIRTPMNGVIGMTGILLDTPLSEL---QRD 817

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             VE I  S   LL ++NDILD + +++G ++L      L + +      +A K  E  + 
Sbjct: 818  CVETIRNSGDALLMIINDILDFSKIESGKLELEEQPFNLRESIESSLDLLAPKAAEKGLE 877

Query: 669  IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG-------DF 719
            +  I D     + + D  RL QI   ++ N + F+ KG  V+ + +              
Sbjct: 878  LAYIFDPNTPETILGDVTRLRQILVNLIGNGIKFTEKGEVVVNVSSYPQEKSSTAPTYTI 937

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
             F+V + G  I  +    +F  F        R   G GLGL I +    L GG +S+ S 
Sbjct: 938  EFAVTDTGIGIAPERKDKLFKAFSQVDSSTTRQYGGTGLGLVISKRLTQLMGGEISVDSQ 997

Query: 778  DEGVTTINCRI 788
                +T    I
Sbjct: 998  QGKGSTFKFTI 1008



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/384 (14%), Positives = 131/384 (34%), Gaps = 39/384 (10%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N  Y      + I   + I +      + +   +++   +       + + E G ++S +
Sbjct: 239 NNFYSLKWRIQVIPSAEIIAKLNSPLPKVV---LVAGLLIGSMLAVALHSTETGRHRSRQ 295

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           + + +    +         E ++ +       I+     +I   +    +Q  NR+  ++
Sbjct: 296 LEQEILHRQQV--------EASLREASRLQQAIVDGANYSIISANPEGIIQAFNRAAEQM 347

Query: 339 WEIDLAFLATNPSNDEL---LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD----T 391
                  +    + + +    E    A +L ++L  K        V K+ +  KD    T
Sbjct: 348 LGYKAEEVVGKFTPEIIHDPQEIQTRAKELSQELGMKIEPGFEVLVAKARQGQKDENIWT 407

Query: 392 WHLPNGQTLHVIVTSN----PRG---GTIWMFENLTVQV----DLETKYNTLVKVQGETI 440
           +   +G +  V+++       +G   G + +  + T ++    DLE     L   Q   +
Sbjct: 408 YIRKDGSSFSVLLSITALYDDQGQISGFLGIGSDRTERLQTQKDLENTLREL-TFQKSAL 466

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D  +  VA+    G IK  N  F  L +     L   TH           ++  D +   
Sbjct: 467 DE-AAIVAITNAKGVIKYVNDKFCQLSQYSREELIGNTH-----RIVKSDHHPPDFFKHL 520

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
            + I+     +  ++   +  S   ++ +I+P  + Q               R      E
Sbjct: 521 WSTISQGKIWQGEIKNKTKNGSYYWVDTTIVPFLDVQGKPFQYLAIRFDITNRK---YIE 577

Query: 561 ALRKADEIKNSFVQHVSYELRSPL 584
              + +  +   ++ +S ++R  L
Sbjct: 578 QALQKELKQTLLLKQISQKIRESL 601


>gi|186682207|ref|YP_001865403.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464659|gb|ACC80460.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1098

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 173/389 (44%), Gaps = 29/389 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +  +E    T           +++ V VF  +GR       +           +    + 
Sbjct: 471 RRQVEEALKTSEAELRLMFAAMTDMVVVFDAEGRY----QKYVQTKYVLTQSFAYKPDMD 526

Query: 482 NIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELL----------SDSVLEYS 529
            I         +     +  AI  +    +E ++  G+ + +           ++    S
Sbjct: 527 RIGKKVDEVLPKEIANLILDAIQQALHLREEPRNPDGSRKNVFVEYHLSNKNRETWFLAS 586

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + PL +   +    ++T   + E AL +  E    A+  K+ F+ ++S+ELR+PL  I+G
Sbjct: 587 VSPLSDNTVLWVARDITKLKKTEAALKQAKETADAANLAKSQFLSNMSHELRTPLNIILG 646

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           FT LL  ++  SLNS+Q +Y++ I+ S   LL L+ND+L+++ ++AG + L+ +   L  
Sbjct: 647 FTQLLLRNR--SLNSQQQEYLDTINRSGEDLLTLINDVLEMSKIEAGRVILSETNFDLYG 704

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           LL+ ++Q  A K     +++ +     +  ++ AD  +L Q+   +L NA+ F+  G  V
Sbjct: 705 LLDRLQQMFALKAQSRGLQLILERSPTIPQYICADESKLRQVLVNLLGNAIKFTRIG-QV 763

Query: 709 ILKAARDNGDFI--------FSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLS 759
            L+    N +          FSV++ G  I +     +F  FV   A +  + G GLGL 
Sbjct: 764 TLRVETPNQNITPDEPITLNFSVEDTGCGIADSDFNRLFEPFVQTEAGQKAQEGTGLGLP 823

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I + F+ L GG + ++S+    +     I
Sbjct: 824 ISQRFVQLMGGDIRVNSTLGKGSIFTFDI 852



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 75/232 (32%), Gaps = 24/232 (10%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS--TLEHGNNKSYKIV 280
            +           ++ ES  L   ++++  ++ +   +     V+  T E G   +    
Sbjct: 400 DQKVSVNSTTELNSLAESFNLMAHQLRESFLALARTNEELESRVTQRTTELGEKNAQLQR 459

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ-FHNRSFV--E 337
            +  S         V + +  ++       +   +T  + +FD     Q +    +V  +
Sbjct: 460 EIRVSEAAQRGRRQVEEALKTSEAELRL--MFAAMTDMVVVFDAEGRYQKYVQTKYVLTQ 517

Query: 338 LWEIDLAFLATNPSNDEL---------LEFLRSA-NKLPEQLNWKTWKENIFSVYKSSET 387
            +             DE+         L+ ++ A +   E  N    ++N+F  Y  S  
Sbjct: 518 SFAYKPDMDRIGKKVDEVLPKEIANLILDAIQQALHLREEPRNPDGSRKNVFVEYHLSNK 577

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +++TW L +       V+       +W+  ++T     E       +     
Sbjct: 578 NRETWFLAS-------VSPLSDNTVLWVARDITKLKKTEAALKQAKETADAA 622


>gi|149178944|ref|ZP_01857521.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148842218|gb|EDL56604.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1165

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 141/734 (19%), Positives = 279/734 (38%), Gaps = 82/734 (11%)

Query: 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI-------LSLD 172
                 ++  A +     GQS+DL         I  +GR     A   +       + L 
Sbjct: 280 PPDIRPQIQNAVKNAINAGQSWDLKL-----PFITAKGRHIWVRAQGELEYQNNKPVRLV 334

Query: 173 GIYSELAE---TTLKCKKLSNHISVFKVLFD-----SLDFLVWHRDQAGDILWANISYKK 224
           G + ++        +   L +H    +   +     + +  +   D  G I   +   ++
Sbjct: 335 GAFQDITREKQLEAEFTLLQDHQFSTRAQLESVIRAATEISIIATDTEGLITLFSPGAER 394

Query: 225 NTETEGIVFQKAIG-------ESRKLFKEEIKKRMISSSALEKNF--------------C 263
                G   ++ IG             ++  ++   +  +  + F               
Sbjct: 395 LL---GYSAEEMIGIKTLLHFHQTSELEQRSRELTDTLGSKVEGFEIFFMPARDGVCDKH 451

Query: 264 ETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
           E     + G  +  ++   +         G  GIAIDV+++     QL  ++E + +L  
Sbjct: 452 EWTYICKDGTERIVELTVTVIRGKQNQIDGYLGIAIDVTQKKIQEQQLFESHEKIKHLID 511

Query: 318 AI--AIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSN-DELLEFLRSANKLPEQLNWK 372
           A+  A +  D    + ++N++  E W  +    + +      +  F    N L  +  W 
Sbjct: 512 ALPAAAYTCDNTGLITYYNQAAAEFWGCEPELNSPDYRFCGSVKMFDSEGNSLAHEDCWM 571

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTL-HVIVTSNPRG---GTIWMFENLTVQVDLETK 428
           +       +Y   E   +  +      L HV   +N  G   G I +  +++ ++ LE  
Sbjct: 572 SVALKNREIYHCKEIVIECENGNRKTALAHVSPITNFEGDMIGAINVVVDISDRIALENS 631

Query: 429 YNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
                  +++  + +D     VA    +G I+  N  F  +   E       TH      
Sbjct: 632 LRETTARLELCLKILDQ-HAIVAETELNGVIRHVNDMFCKVSGYEREETIGQTH----RI 686

Query: 486 TCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             S  + +    ++F  I  +  +  E  + +   EL     L+ +I  + + +   T  
Sbjct: 687 VNSGLHPKEFWQNVFKTISTVGMWQGEICNRRKNGELY---WLDTTIAAMKDGEGKATGY 743

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSL 602
               +   E  L    EA   A   K+ F+ ++S+E+R+PLT I+GF +LL+   +  S 
Sbjct: 744 LAIRNDITE--LRLAQEAALAASHSKSEFLANMSHEIRTPLTAILGFAELLRNDHEFASS 801

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             K+ Q V+ I  +   LL ++NDILDL+ ++AG +++  ++  L ++L+ ++  +    
Sbjct: 802 AGKREQAVKTIQEAGNHLLTVINDILDLSKIEAGKVEIEKTSTQLFNILDHIESLLRPPA 861

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-- 718
            E  + +    +  L   +  D  RL QI   ++ NA+ F+ KG   + +K   +N    
Sbjct: 862 IEKGVELVTRIETPLPDLIETDSTRLRQILMNLVGNAVKFTDKGRIQIKVKFLEENESRF 921

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS- 775
             F ++++G  + +     +F  F         Q  G GLGL I      L GG VS++ 
Sbjct: 922 LKFEIEDSGPGMSDRQAAKMFMAFSQADTSVTRQHGGTGLGLVISRKLARLMGGDVSLAW 981

Query: 776 SSDEGVTTINCRIP 789
           +     T     +P
Sbjct: 982 TEPGKGTCFRVVLP 995


>gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 864

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 187/425 (44%), Gaps = 29/425 (6%)

Query: 396 NGQTLHVIVTSN---PRGGTIWM-----FENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           NG+ + +        PRG   +        +++ +   +++           I+ +S+  
Sbjct: 418 NGRAIWIDARGQATGPRGPAGFTRLSGVALDVSEERAAQSRAQRAEARLTGAINSVSDAF 477

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITS 506
            ++   GR+ + N  F   +  +   L  GT    I    +      +   D    ++ +
Sbjct: 478 VLWDRRGRLVMWNAVFGRTFSIDPRFLKAGTSRELIEKVMAIAIRRQEPVIDGREGVVEA 537

Query: 507 FDDERKSLQ---------GTLELLSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             ++ + +Q         GT+   +D     ++  +      Q       +  S R +  
Sbjct: 538 ELNDGRWIQISESRTLEGGTVVTGADITAIKVQEEMSRRNEEQLQAMVDKLEQSRRIQTD 597

Query: 555 LTEKNEALR----KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
           L +K E  +    +A+  K+ F+ ++S+ELR+PL  I GF++++     G L +++  +Y
Sbjct: 598 LAKKYEMAKIRAEQANHAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKEY 657

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +S   LL L+NDILD++ ++AG M L +  + + +++++  + +  +  +  +++
Sbjct: 658 AGDILSSGQHLLALINDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLKM 717

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +V    +L    AD + L QI   IL+NA+ F+  G T+ + A   +      V + G  
Sbjct: 718 RVHL-PQLPDIQADYRALKQILLNILTNAIKFTPSGGTITVSAVPTDSFMHLYVADTGIG 776

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I     + +   F    +     + G GLGL++ +S I +H G + + S+    TT++  
Sbjct: 777 IAPKDMERLARPFEQIENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVSVI 836

Query: 788 IPSKE 792
           +P  +
Sbjct: 837 LPLTQ 841



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 109/339 (32%), Gaps = 28/339 (8%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG---IVFQKA 236
             +   ++     + +++  ++    +W  D   D ++ +          G       + 
Sbjct: 324 RNSEAARQYEAKETRYRLAVEAARCGIWEWDLESDQVFMSEVTGVMFGWGGSGVATTNEV 383

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGI---- 291
           +       +E ++K ++++              ++G         +     G AG     
Sbjct: 384 LLRIAPEHRETVRKALLNARGHGALDVSFRVPGDNGRAIWIDARGQATGPRGPAGFTRLS 443

Query: 292 --AIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
             A+DVS+E     +       L    ++++ A  ++D+   L   N  F   + ID  F
Sbjct: 444 GVALDVSEERAAQSRAQRAEARLTGAINSVSDAFVLWDRRGRLVMWNAVFGRTFSIDPRF 503

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L    S + + + +  A +  E +     +E +               L +G+ + +  +
Sbjct: 504 LKAGTSRELIEKVMAIAIRRQEPVI--DGREGVVEA-----------ELNDGRWIQISES 550

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VAVFGPDGRIKLSNPAFR 464
               GGT+    ++T     E       +     +D L +          + +++     
Sbjct: 551 RTLEGGTVVTGADITAIKVQEEMSRRNEEQLQAMVDKLEQSRRIQTDLAKKYEMAKIRAE 610

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
                +   L+  +H           ++E    ++F  +
Sbjct: 611 QANHAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPL 649



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 115/369 (31%), Gaps = 38/369 (10%)

Query: 7   TIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEIC 66
                  +   TLF   + +      +L         +++ R +             +  
Sbjct: 291 AAAARNWLTTATLFIGPLIIGALFGMLL---------IVQSRRNSEA--------ARQYE 333

Query: 67  DQLSKYHSLLTENNCLTIVWDGKDE---TPEIIGQLHQ--RIDIPQTDTDLLSFENWLKF 121
            + ++Y   +    C    WD + +     E+ G +       +  T+  LL     +  
Sbjct: 334 AKETRYRLAVEAARCGIWEWDLESDQVFMSEVTGVMFGWGGSGVATTNEVLLR----IAP 389

Query: 122 HHYIKLSKATEKLRKEGQ---SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
            H   + KA    R  G    SF +  +      I   G+ +G         L G+  ++
Sbjct: 390 EHRETVRKALLNARGHGALDVSFRVPGDNGRAIWIDARGQATGPRGPAGFTRLSGVALDV 449

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
           +E      +     +      +S+       D+ G ++  N  + +   T  I  +    
Sbjct: 450 SEERAAQSRAQRAEARLTGAINSVSDAFVLWDRRGRLVMWNAVFGR---TFSIDPRFLKA 506

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN-SFGEAGIAIDVSK 297
            + +   E++    I       +  E V   E  + +  +I        G      D++ 
Sbjct: 507 GTSRELIEKVMAIAIRRQEPVIDGREGVVEAELNDGRWIQISESRTLEGGTVVTGADITA 566

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
              V ++++   E    L   +   +Q+R +Q       E+ +I       N +  E L 
Sbjct: 567 IK-VQEEMSRRNE--EQLQAMVDKLEQSRRIQTDLAKKYEMAKIRAE--QANHAKSEFLA 621

Query: 358 FLRSANKLP 366
            +    + P
Sbjct: 622 NMSHELRTP 630


>gi|78223984|ref|YP_385731.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78195239|gb|ABB33006.1| amino acid-binding domain sensor histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 576

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 161/291 (55%), Gaps = 5/291 (1%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEA 561
           +T F    ++L+ T++L +  + +         + +  +    + +  ER   L    E 
Sbjct: 284 VTGFILWNRTLRRTVKLRTAQLEQELAERKMAEEELRKYRENLEDLVRERTAELAVAKER 343

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              AD++K++F+  +S+ELR+PL +IIGFT +L     G +N +Q++ +  +  S+  LL
Sbjct: 344 AEAADQLKSAFLATMSHELRTPLNSIIGFTGILLQGLGGPINDEQAKQLTMVRHSANHLL 403

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L++D+LD++ ++AG +K++     L + + +V QS+A  + +  +R+ +     +GS V
Sbjct: 404 SLISDVLDISKIEAGQLKISPEPFQLRESVQKVTQSVAGLVDKKGLRLILEIADDVGSIV 463

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +D++R+ Q+   +LSNA+ F+ +G T+ ++ +R++  ++ SV ++G  I E+  + +F  
Sbjct: 464 SDQRRVEQVLLNLLSNAVKFTEQG-TISVRCSRESEWYVTSVADSGIGIKEEDLERLFKP 522

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F         +  G GLGLSI +  + L GG +++ S     +T    +P+
Sbjct: 523 FHQVDTGLSRKYEGTGLGLSICKRLVELMGGSITVESRQGEGSTFCFLLPA 573


>gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1314

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/506 (22%), Positives = 215/506 (42%), Gaps = 23/506 (4%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFH--NRSFVELWEIDLAFLATNPSNDELLEFL 359
           N++L      L +L   IA+ D  R L+F   NR  VE   + L  L +    D  L   
Sbjct: 316 NERLARFRATLDHLDDMIALADP-RTLRFVDVNRGMVESTGLSLDGLLSKRLAD--LTTP 372

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           +S  K+   +N      +    ++ +  H +   +     +  +     +   + M  + 
Sbjct: 373 QSQAKVNRIMNRLVVGLDRMLRFEVTLQHTNGSCIETDALVQWVELEAGKPVVVHMLRDA 432

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS-PGT 478
           T +   ET      +     ++  ++G+  +         +P   ++       L+    
Sbjct: 433 TERKRAETALRVSEERLTFALEGSNDGLWDWNIAEDNLHCSPRLEAMLGFRRGSLTGSMA 492

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLSDS--VLEYSIIPLP 534
            ++++     R   E+         +  ++ E +  S  G L  + D   V++ +    P
Sbjct: 493 RLKSMIVEQERPGVEALLRIHLDGHVDLYEAEYRINSASGRLLWILDRGKVVQRNSKGQP 552

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + + TF ++T     E AL +       A   K+ F+ ++S+E+R+P+  I+G + L 
Sbjct: 553 -IRAVGTFTDITARKDMEAALHDAKVEAESASRAKSRFLANMSHEIRTPMNAILGLSSLA 611

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                    ++Q  ++E I+ S   L+ L+NDILDL+ ++A  M L      L++LL ++
Sbjct: 612 LEQAK---EARQRDFLEKINHSGHFLMGLLNDILDLSKIEAERMDLESQPFRLDELLKQL 668

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
             ++   M    + +   I+ G   + V D  RL Q+   +LSNAM F+ +G   + L A
Sbjct: 669 AANVLPAMRNKAVEVHFFIASGTPLALVGDALRLGQVLHNLLSNAMKFTHEGEVRITLTA 728

Query: 713 A-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
                  D+  F F VK++G  IP ++   +F  F+       R   G GLGL+I    +
Sbjct: 729 EPYVQLTDHYLFTFEVKDSGIGIPAEVQPKLFESFIQADSSTTRQYGGSGLGLAICRRLM 788

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G +++ SS    +T  CR+P +
Sbjct: 789 EMMHGKITLQSSLGQGSTFTCRLPLQ 814


>gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
 gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
          Length = 631

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 133/258 (51%), Gaps = 2/258 (0%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N        +     +  + L E  E L++ D +K+  +  VS+ELR+PLT+I G+ +L+
Sbjct: 375 NKMAEDVRKSHEALKKHAKELEESYEKLKEVDRLKSEIISIVSHELRTPLTSIKGYVELV 434

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +G LN  Q + +E    +   L  L++++LDL+ +++G +K +   I + D++NEV
Sbjct: 435 LDGLMGELNENQRRCLEIAKNNIDRLKRLIDNMLDLSKIESGAIKFDIKDIKVKDMINEV 494

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             S+     E NI +K   +  L + V D+ R++Q+   ++ NA+ FS     + + A R
Sbjct: 495 LNSLQPLTKEKNIEVKCDIEDNLTAKV-DKDRIIQVLINLIENAIKFSPVKGVIEIHAFR 553

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVS 773
           D       +K+ G  IP+   + +F++F      + +R G GLGL+I +S I  HGG + 
Sbjct: 554 DKNYAHIIIKDYGPGIPKKDLERIFDKFYQVNFPKIKRDGAGLGLAICKSIIEAHGGKIW 613

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S     +  +  +P +
Sbjct: 614 VESELGKGSAFHILLPME 631


>gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
 gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1710

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 121/650 (18%), Positives = 243/650 (37%), Gaps = 46/650 (7%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TETEGIV 232
            ++ET     ++       + ++ ++   +  +D+    L  N            E  G  
Sbjct: 837  ISETKEFQNEIERQNIELENIYANIPVGLCLQDENWRYLRMNKILADINGKSVEEHIGKQ 896

Query: 233  FQKAIGESRKLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
             Q+ I E  ++ +   ++   +   +     +                 Y +    +  G
Sbjct: 897  PQEVIPELLEIVEPIYRQVQTTGEPVLNIEIQGTTAAQPDIKRDWITSYYPVELSSDKIG 956

Query: 288  EAGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFD----QNRYLQFHNRSFVELWEI 341
               +  +V++   V + L  +   L  L       IF      +    + + +   L   
Sbjct: 957  FGVVVTEVTQLKQVQEALRQSEARLQYLLNNTPAVIFSCKPQGDYAATYISPNIRNLLGY 1016

Query: 342  DLAFLATNP----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            +      N     ++    +  R    LP+ LN   +  + + +     T ++T+   + 
Sbjct: 1017 EPEEFLNNSDFWVTHLHPDDRARILTGLPKGLNEDGFYTHEYRL----RTTENTYRWVSA 1072

Query: 398  QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
                +    N     +    ++T +V  E  +    +     + +          + R  
Sbjct: 1073 TLQMIKDQQNTPLECVGCLMDITERVVAEEAWRWSEERFNLALSNSPITFTTQDCELRYT 1132

Query: 458  LS-NPA----FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
               NPA    F  +    E  L        I A          G         + D + +
Sbjct: 1133 WVYNPAPGFTFEEIVGNLETELLSADEAERILAIKQPVI--ETGIRNCQEYFIARDGQMR 1190

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNS 571
              + ++E L DS  + +II +      +T     +  R   R L  + EA   A+  K+ 
Sbjct: 1191 YYELSVEPLRDS--DNNIIGIATVVIDITERKQAELERQRARELQREKEAAESANLAKSR 1248

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+ELR+PL  I+GFT LL      S     S+Y+  I  S   LL L+NDIL L+
Sbjct: 1249 FLANMSHELRTPLNAILGFTQLLLRQPQFSGEP--SEYLNIIHRSGKHLLGLINDILTLS 1306

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQI 690
             V+AG + L      L+ LL  ++   + K     +++++ +D  +    + D  +L Q+
Sbjct: 1307 KVEAGRIYLKTKPFDLSLLLKTLENMFSLKAANKRLQLEIKADANVPRGLIGDEDKLHQV 1366

Query: 691  FSKILSNAMDFSSKGST-VILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRF 742
               +LSNA+ F+S G   + +++     +         F V++ G+ I  D  + +F  F
Sbjct: 1367 LINLLSNAIKFTSFGEVCLTVRSQPVPAEMSSNSCYLQFEVRDTGAGINFDELEKIFEPF 1426

Query: 743  VSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +      + ++  GLGL+I   F+ L GG +++ S  +  +     IP +
Sbjct: 1427 IQTEAGEKVKQSTGLGLAISREFVELMGGKITVESQLKHGSVFQFTIPLE 1476



 Score = 38.4 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 52/192 (27%), Gaps = 24/192 (12%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRS---FVELWEIDLAFLATNPSNDELLEFLRSA 362
                +L +  + +   D++  ++    +    + L E+D+                R  
Sbjct: 730 NDVNNLLQSTDIGVIFLDKSLKIRKFTPAVVVAINLNEVDID---------------RPL 774

Query: 363 NKLPEQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRG-----GTIWMF 416
             +    +   +   +  V    +   ++   L  G TL + +    +      G +  F
Sbjct: 775 QHISYNFDCPHFYSLLQQVLTHEQPIEQEVKILTTGDTLLMRIHPYRQENQSCEGLVLSF 834

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            N++   + + +             ++  G+ +   + R    N     +          
Sbjct: 835 VNISETKEFQNEIERQNIELENIYANIPVGLCLQDENWRYLRMNKILADINGKSVEEHIG 894

Query: 477 GTHIRNIAATCS 488
                 I     
Sbjct: 895 KQPQEVIPELLE 906


>gi|85860639|ref|YP_462841.1| sensor proteinluxq [Syntrophus aciditrophicus SB]
 gi|85723730|gb|ABC78673.1| sensor proteinLuxQ [Syntrophus aciditrophicus SB]
          Length = 955

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/589 (18%), Positives = 226/589 (38%), Gaps = 44/589 (7%)

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAI---DVSKEIT 300
            +    ++ ++S       ET+     G   + ++ +  L+  G   + +   D+S    
Sbjct: 81  DKAWSDQLRNASETGSAHFETLCQRRSGEQFAAEVLISALSYEGGRILQVSVCDISARRR 140

Query: 301 VNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             + L  +++    I+     A+   D    +   NR+  ++       +    + +   
Sbjct: 141 TEEALLESHKQFKGIIDFFPDAVLAIDTEGKVIAWNRAMEQMTGAPAGEVIGRGNYEHGF 200

Query: 357 EFLRSANKL-------PEQLNWKTWKENIF-SVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           +   +   +       P++   + +        Y  S+T         G+     V + P
Sbjct: 201 QIYGTRRPILADLVLNPQEDIERAYPRFYRKGNYLISDTSSSKLSDTLGKDYFTSVAATP 260

Query: 409 R-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
                    G I    +++ +   E       +   + ID   + +     +GR+   N 
Sbjct: 261 LYDDEGKIIGAIESIRDISDRRLAERALAESQRRFKDIIDFFPDAILAVDIEGRVVTWNH 320

Query: 462 AFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESD----GWDLFAAIITSFDDERKSLQG 516
           A   +     E  L  G +   +    +R     D      +       S   E   L G
Sbjct: 321 AMEQMTGIPAEEMLGKGNYEYALPFYGTRRPILIDLAMRPQEEIEHHYVSIHREGNRLLG 380

Query: 517 TLELLS----DSVLEYSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADE 567
              + +    +  L  +   L +++  +        +++D    E AL +  EA   A+ 
Sbjct: 381 ETYIANLHGGNIFLSGTATALYDSKGRMIGAIESLRDISDRKATEVALQQAKEAADAANR 440

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K++F+ ++S+ELR+PL  IIG+++LL+     +  +     ++ I ++   LL L+NDI
Sbjct: 441 SKSAFLANMSHELRTPLNAIIGYSELLQEEAEEAGVNHFISALDRIHSAGKHLLGLINDI 500

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ ++A  ++L   T  +++++  + +     + +N   + V      G   AD  RL
Sbjct: 501 LDLSKIEASKIELYPETFSVSEMIESIVKIADPLVKKNGNILIVKGCETGGEMHADLTRL 560

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q    +LSNA  F++ G  + L  +R    +     FS+ + G  +     + +F  F 
Sbjct: 561 RQCLFNLLSNAAKFTTSG-VITLTVSRTQEAEQEWMNFSLHDTGIGMTPQQMERLFQTFT 619

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  R   G GLGL+I  +F  L GG +++ S     +    RIP+
Sbjct: 620 QADSSTTRKFGGTGLGLTITRNFCRLMGGDITVESEYGKGSLFTIRIPA 668


>gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
 gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
          Length = 776

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 169/364 (46%), Gaps = 17/364 (4%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +  E ++H+  G+ +  P+G I  +N  F  +    E  L  G     I      Y ++ 
Sbjct: 1   MLLEVLEHVPVGMILLSPEGDILAANGRFFDMVDWTEEELD-GVRFPQII-----YSSDE 54

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRAER 553
                F   +   + ++ S+         S+  + +       + +L   ++TD    E 
Sbjct: 55  PVVSSFIERLARGEVDQASILVRAARKDGSIAWWRLWGFSRGGEVLLGAFDITDQKVTEE 114

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E   ++ + K+ F+ ++S+E+R+PL  I+G T+LL+ ++   L+ +Q  YV+ I
Sbjct: 115 HLRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTR---LDEEQRDYVQQI 171

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL L+NDILD + ++AG + +      L +++ +    ++ + H+ ++ + V  
Sbjct: 172 RFSGEALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDI 231

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGS 728
             ++      D  R+ QI   + +NA+ F+ KG     V L   R    ++ F+V++ G 
Sbjct: 232 GEEVPRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQERKGVAWVAFTVEDTGI 291

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE+    +F  F        RR  G GLGL+I +S + +  G + + S +   ++   
Sbjct: 292 GIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSKEGEGSSFWF 351

Query: 787 RIPS 790
            +P 
Sbjct: 352 LLPL 355


>gi|298527776|ref|ZP_07015180.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511428|gb|EFI35330.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 949

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 117/675 (17%), Positives = 251/675 (37%), Gaps = 82/675 (12%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
           + + +KL     +F  L   +  + W R +   +L+ +  Y    E        A+    
Sbjct: 147 SERLQKLEQTEKIFLHLVQYIPSVFWLR-EKNRMLYVSPGY----EMIWGRPLDALFNDM 201

Query: 242 KLFKEE------------IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-NSFGE 288
           + F               + +   S  ++E  F         G  +  +I        G 
Sbjct: 202 EHFYRSVHVKDLDWAFKCLHEDFFSKHSIELEFRIVRP---EGAVRWVRIRSYPIFEDGS 258

Query: 289 ----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR----------- 333
               AGIA D++ E  +  +L      L  +     + ++   L   N+           
Sbjct: 259 VVRRAGIAEDITSEKAMLGELDRYRFHLDEM-----VKEKTVRLSCLNQILENDVEDRKK 313

Query: 334 ---SFVELWEIDLAFLATNPSNDELLEF-----------LRSANKLPEQ------LNWKT 373
                ++   +  +F+ +      L++F            R+    P++        +  
Sbjct: 314 LHKKLIKSNALFRSFVDSFIHPALLVDFDGTILALNKAVARAFGTTPDKIAGCSAFKFLE 373

Query: 374 WKENIFSVYKSSETHKDTWHLP----------NGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           W+   + + K  E       L           + Q   V+  S      ++   ++T  V
Sbjct: 374 WERFEYFMVKVQEVLCTGKPLRFNENVGNVHFDVQVSPVVEPSGKAFQAVFYLNDITEVV 433

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E + +         +D +   V      G     N     +       +        I
Sbjct: 434 QAEEELHRSWARLCAVVDSMPVLVHAHDEAGNFVFWNKESERVLGYTAEEMLNNPDAFEI 493

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             T      ++          T    E K   G ++ +    L  S  P+   +     +
Sbjct: 494 LYTEKGLRKKALKCWADYDGKTPCTLEVKDKSGCIKTIEWHRLS-SNYPIAGWKDWEAGL 552

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    ER L +      KA+++K+ F+ ++S+E+R+P++ +IG + +L  +   S +
Sbjct: 553 DVTEKKAGERQLLKAIAETEKANQLKSRFLANISHEVRTPISGVIGLSSMLLKT---SAD 609

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q + ++ I+  S  LL ++N+ILD + +++G   L      L+ +   +  ++ +++ 
Sbjct: 610 DDQKRMIQNIANLSEYLLQIINEILDFSKLESGSYSLEQHDFDLDSMFESIAAALCSQVQ 669

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           E N+  KV+ +  +      D   L +I   + +NA+ F+  G+ ++    L  ++D  +
Sbjct: 670 EKNVEFKVLIEDDVPVHLRGDGYSLKRILVNLTANAVKFTDAGNVILRASLLNRSKDRLE 729

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F V + G  +P  + +++F  F         +  G GLGL+I +S + + GGH+ + S
Sbjct: 730 ILFVVFDTGVGVPAAIQETIFEPFTQAEGGFSRRYGGTGLGLAICKSLVEMMGGHIWMES 789

Query: 777 SDEGVTTINCRIPSK 791
           +    ++   RIP +
Sbjct: 790 TPGEGSSFFVRIPFE 804



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 70/203 (34%), Gaps = 15/203 (7%)

Query: 166 LRILSLDGIYSELAETTLK-CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           +R+  L+ I     E   K  KKL    ++F+   DS        D  G IL  N +  +
Sbjct: 295 VRLSCLNQILENDVEDRKKLHKKLIKSNALFRSFVDSFIHPALLVDFDGTILALNKAVAR 354

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE---KNFCETVSTLEHGNNKSYKIVR 281
                G    K  G S   F E  +         E          +      +   ++  
Sbjct: 355 ---AFGTTPDKIAGCSAFKFLEWERFEYFMVKVQEVLCTGKPLRFNENVGNVHFDVQVSP 411

Query: 282 VLNSFGEAGIAI----DVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNR 333
           V+   G+A  A+    D+++ +   ++L  ++  L     ++ V +   D+     F N+
Sbjct: 412 VVEPSGKAFQAVFYLNDITEVVQAEEELHRSWARLCAVVDSMPVLVHAHDEAGNFVFWNK 471

Query: 334 SFVELWEIDLAFLATNPSNDELL 356
               +       +  NP   E+L
Sbjct: 472 ESERVLGYTAEEMLNNPDAFEIL 494


>gi|115360386|ref|YP_777523.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285714|gb|ABI91189.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 768

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 101/511 (19%), Positives = 195/511 (38%), Gaps = 34/511 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     QL     +L  L   +   D    + + N + + L    L      P  D L  
Sbjct: 122 EAAARRQLDA---VLQALPDGVIATDAQGRITYVNAAAIALAGGALEDATGRPVRDVLHV 178

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSNP-------R 409
           F R        +     +  +   +  S+ H    H  +G   + ++  ++P        
Sbjct: 179 FDRDDR----PVQPTPLERALAGAHALSDRH--WLHGADGSPPVPIVEAASPIVDAHGSL 232

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G + +  +       E     + ++Q   +D   + +     +GRI   NPA + ++  
Sbjct: 233 DGAVLLLRD----AGTERALAEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGY 288

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLS 522
           +E           +A    R    +D +D     +          D  R     +   + 
Sbjct: 289 DEADARGRPLETLVAMRWLRRNPLADSFDAMREAVGPLELLCVRRDGRRFRATVSAGPVR 348

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                   + L   +T         + R+ +   +  +    ++ +K+  +  VS+ELR+
Sbjct: 349 GDARNCVALSLTLRETGAQRRRDLRTQRSLQGARDARDRADTSNRLKDELLATVSHELRT 408

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I G+ ++L+ ++  +L     Q ++ I  S+  L  +V DILD +++  G ++++ 
Sbjct: 409 PLNVIYGWIEVLRNTRDDALE---QQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDP 465

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + +  L ++   +  T      I ++            D +RL Q+ + ++SNA+ F+
Sbjct: 466 MPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFT 525

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
             G  V +  +RD+   +  V + G  IP      VF+ F          RRG+GLGLSI
Sbjct: 526 PGGGAVTVTLSRDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSI 585

Query: 761 VESFINLHGGHVSISSSD-EGVTTINCRIPS 790
           V     LHGG V + S+      T    +P+
Sbjct: 586 VRHIAGLHGGQVRVESAGRNRGATFTVTLPA 616



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/380 (12%), Positives = 101/380 (26%), Gaps = 39/380 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG-IV 232
           +        L  +  +        +  +L   V   D  G I + N +            
Sbjct: 108 LRHARVTNRLAYQNEAAARRQLDAVLQALPDGVIATDAQGRITYVNAAAIALAGGALEDA 167

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---------IVRVL 283
             + + +   +F  + +    +           +S     +              IV   
Sbjct: 168 TGRPVRDVLHVFDRDDRPVQPTPLERALAGAHALS-----DRHWLHGADGSPPVPIVEAA 222

Query: 284 NS--------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
           +          G   +  D   E  + +       ++     AI   D+   +   N + 
Sbjct: 223 SPIVDAHGSLDGAVLLLRDAGTERALAEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAA 282

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             ++  D A     P   E L  +R   + P   ++   +E       +    +      
Sbjct: 283 QRIFGYDEADARGRPL--ETLVAMRWLRRNPLADSFDAMRE-------AVGPLELLCVRR 333

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +G+     V++ P  G       L++ +               ++    +         R
Sbjct: 334 DGRRFRATVSAGPVRGDARNCVALSLTLRETGAQRRRDLRTQRSLQGARDA------RDR 387

Query: 456 IKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
              SN     L  T  + L    + I           +++       AI  S     + +
Sbjct: 388 ADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDALEQQAIDAIDRSARSLTRMV 447

Query: 515 QGTLELLSDSVLEYSIIPLP 534
              L+  S +  +  I P+P
Sbjct: 448 GDILDASSLATGKLRIDPMP 467


>gi|88813407|ref|ZP_01128644.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
 gi|88789373|gb|EAR20503.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
          Length = 831

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 91/529 (17%), Positives = 194/529 (36%), Gaps = 25/529 (4%)

Query: 282 VLNSFGEAGIAIDVS------KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
                 +A  A+D         E  + ++       L ++  A+   D    +   N   
Sbjct: 156 TRRELQQALHAVDQELTQRKLAEQALQEERDLLTVTLTSIGDAVITTDTEGRITSLNAMA 215

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             L     A  A  P +           +  +    +T +E +         +       
Sbjct: 216 ESLTGWASAEAAGRPLDAVFRIVNEQTRRTVDNPATRTLREGVI----VGLANHTVLVRK 271

Query: 396 NGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GV 447
           +G    +  ++ P         G + +F ++T +   E       +     ++ + +  +
Sbjct: 272 DGTERPIDDSAAPIRDDQGQVLGCVLVFRDITERRKAEAALQENERRFRTLVEQVKDYAI 331

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFAAIIT 505
            +   +GR    N   R +   EE        +  I             +     A    
Sbjct: 332 FMTDAEGRATSWNEGVRRVLGFEEADFLGQDIVPTIFTPEDVESGVPLRELEQAAATGKA 391

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             D   +   G+    + +              M    + T+  R E  L +    L +A
Sbjct: 392 GSDRWMRRKDGSRFFATGTTAALHDKAGKLVNFMKVMRDQTEQKRLEDELRKTAADLSEA 451

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ F+  + +ELR+PL  I    +L+K +      +K  +    +      ++ L++
Sbjct: 452 NRRKSEFLATLGHELRNPLAPIRMGLELMKMAADSP--AKMEEIRGMMERQVLQMVRLID 509

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD++ +  G ++L    + + +++    +     + E + ++ V    +     AD  
Sbjct: 510 DLLDVSRITRGKLQLRICRVAVANVVQNAVEMARPFIDEADHQLTVAVPPQPIHLDADPN 569

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q+FS +L+N+  ++ +G  + L A R   D + ++++NG  IP DM  S+F  F   
Sbjct: 570 RLAQVFSNLLNNSAKYTPEGGHIWLSAERQGSDVVVTIRDNGIGIPADMQTSIFEMFTQV 629

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPSK 791
               ++   G+G+GL++V+  + +HGG +   S      +    R+P K
Sbjct: 630 DRPLEQGYTGLGIGLTLVKQLVEMHGGRIDARSEGSGRGSAFEVRLPLK 678



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 93/360 (25%), Gaps = 44/360 (12%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI-------- 220
            +L  +  EL +  L  + L     +  V   S+   V   D  G I   N         
Sbjct: 162 QALHAVDQELTQRKLAEQALQEERDLLTVTLTSIGDAVITTDTEGRITSLNAMAESLTGW 221

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +  +          + + E  +   +    R +    +      TV   + G  +     
Sbjct: 222 ASAEAAGRPLDAVFRIVNEQTRRTVDNPATRTLREGVIVGLANHTVLVRKDGTERPIDDS 281

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTV-----AIAIFDQNRYLQ 329
                       G   +  D+++       L         L       AI + D      
Sbjct: 282 AAPIRDDQGQVLGCVLVFRDITERRKAEAALQENERRFRTLVEQVKDYAIFMTDAEGRAT 341

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N     +   + A          +          PE +        +     + +   
Sbjct: 342 SWNEGVRRVLGFEEADFLGQDIVPTIF--------TPEDVESGVPLRELEQAAATGKAGS 393

Query: 390 DTW-HLPNGQTLHVIVTS---NPRGGTIWMF----ENLTVQVDLETKYNTLVKVQGETID 441
           D W    +G       T+   + + G +  F     + T Q  LE +         E   
Sbjct: 394 DRWMRRKDGSRFFATGTTAALHDKAGKLVNFMKVMRDQTEQKRLEDELRKTAADLSEANR 453

Query: 442 HLSEGVAVFGPDGR---------IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
             SE +A  G + R         ++L   A  S  K EE R      +  +        +
Sbjct: 454 RKSEFLATLGHELRNPLAPIRMGLELMKMAADSPAKMEEIRGMMERQVLQMVRLIDDLLD 513


>gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 753

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 165/386 (42%), Gaps = 25/386 (6%)

Query: 422 QVDLETKYNTLVKVQGET------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           Q +LE  Y  L+  Q E         H ++ V +   + +++  N AF  +       + 
Sbjct: 223 QQELEGAYQRLLSQQVEAKRLALVARHANDSVLLIDQNNKVQWVNEAFTRITGYSFEEIQ 282

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                R      +      D  D       +    R  +    +   D  LE + +P+  
Sbjct: 283 G----REPGELLNHPQTNQDTLDKLIEGRRARQPFRLEILNRHKDGHDVWLETNQVPILG 338

Query: 536 AQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            Q      +    ++T + +  + L E   A  +    K+ F+  +S+E+R+P+  +IG 
Sbjct: 339 NQGGEMSYIAIERDMTAAKQNAQQLEEARLAAEEGGRAKSDFLATMSHEIRTPMNGVIGM 398

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL+ +    L+  Q  Y   I +S+  LL L+NDILDL+ +DAG + LN     L+  
Sbjct: 399 AQLLEET---DLDGDQRLYTNTILSSAKTLLALINDILDLSKLDAGQISLNPCNFDLHQC 455

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-- 707
           L E  Q + T+     + ++V  D  L    V D  RL QI + ++ NA+ F+ KG    
Sbjct: 456 LEETIQLLLTQAEAKGLTLEVERDVDLPRYLVGDDHRLRQILNNLVGNAIKFTEKGRVKV 515

Query: 708 -VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
            V ++ A+D G  +  ++ + G  IP+DM   +F RF         +  G GLGL+I   
Sbjct: 516 SVEMEPAQDGGVLLNCAIIDTGIGIPKDMLTGIFERFSQADAAISRRFGGSGLGLAISRR 575

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
                GG ++++S     +     +P
Sbjct: 576 LAEAMGGRITVTSEIGSGSCFTLVLP 601



 Score = 38.8 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 18/163 (11%)

Query: 163 CAFLRILSLDGIYS-ELAETTLKCKKLSN---HISVFKVLFDSLDFLVWHRDQAGDILWA 218
            +F RI S+    + +  E     ++L +         ++    +  V   DQ   + W 
Sbjct: 207 RSFSRIRSIMLTQALQQQELEGAYQRLLSQQVEAKRLALVARHANDSVLLIDQNNKVQWV 266

Query: 219 NISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-ETVSTLEHG 272
           N ++ + T     E +G    + +   +    ++   ++I      + F  E ++  + G
Sbjct: 267 NEAFTRITGYSFEEIQGREPGELLNHPQT--NQDTLDKLIEGRRARQPFRLEILNRHKDG 324

Query: 273 NNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTY 309
           ++   +  +V              I  D++       QL    
Sbjct: 325 HDVWLETNQVPILGNQGGEMSYIAIERDMTAAKQNAQQLEEAR 367


>gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1143

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 116/686 (16%), Positives = 239/686 (34%), Gaps = 84/686 (12%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           L  +    A      + L +    ++ +F++    ++   +       N ++ +    E 
Sbjct: 186 LSAVQDITARVQAD-RALKDSEEKYRGIFENAPLGIFRATRQQSYTSVNPAFARMHGYES 244

Query: 231 IV---FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                 +      R       ++R +     +       S     +   +  +  L + G
Sbjct: 245 PAQLLAETGDAACRYCADPAERQRFLDRVDSQGLVANQESCRLRRDGTKFWALTTLKAAG 304

Query: 288 EA------GIAIDVSKEITVNDQLTHTYEILHNL--TVA--IAIFDQNRYLQFHNRSFVE 337
                   G   D+S+     + L  +     +L  T    I + D N  +   NR   +
Sbjct: 305 TPQEPYYEGFVADISQRKAAEEALRRSETRFRSLFETAGSLIVLLDVNLRILEFNRKAEQ 364

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           +            +  ++L    S    PE       +      ++     +      +G
Sbjct: 365 VTGY---------ARSDVLGQEFSTLFAPEAREELGARLLSVIGHRRERDLEQVVRGRDG 415

Query: 398 Q-------TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL------- 443
           +          +  +     G I + +++T Q   E +   L + + E +  L       
Sbjct: 416 RISVILWNMTRLEGSPESLNGVIAVGQDITAQKMAEKQLR-LNQARLEALLSLFQVEDRQ 474

Query: 444 ---------SEGVAVFGPD-GRIKLSN-----PAFRSLWKTEENRLSPGTH--------- 479
                     + V + G + GRI L+          +     E  ++   H         
Sbjct: 475 ARDMAEYVLGQAVDLTGSEAGRILLATGEEDLDIVTTGLPGRECPVTKQAHDLSALSGVW 534

Query: 480 -----------IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                      I + A    R         L   +I    D  + +         +  + 
Sbjct: 535 SIAARSKRPLVINDYARRSRRRPLPEGHPPLRRLLIAPVLDSGRVVAMAAVANKAAPYD- 593

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +        +          +A   + +  E    A   K+ F+ ++S+E+R+P++ I+
Sbjct: 594 QLDAKQLMLLLEGLWAHVKRKQATLEILQAKEQAEAASRAKSEFLANMSHEIRTPISGIL 653

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  D+L T++   L  +Q+QY+  +  S+  LL ++NDILDL+ ++A  +KL      L+
Sbjct: 654 GMADVLLTTR---LEDRQAQYIALLKDSANALLIIINDILDLSKIEARKLKLEPELFNLD 710

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS- 706
             L  V      +  +  + ++V  D  L      D  RL QI + +LSNA+ F+S+G  
Sbjct: 711 AALRAVVDPFVLQTVKKGLGLEVHLDPGLPPKLHGDPIRLGQILTNLLSNALKFTSRGGV 770

Query: 707 ---TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
               V ++ +  + +  F V++ G  IP D    +F  F        ++  G GLGL+I 
Sbjct: 771 TLRVVPVQVSGVDCELRFEVQDTGLGIPSDKQDRLFRSFSQLDSSYAKQYCGTGLGLAIS 830

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
           ++F+ + GG + + S +   +     
Sbjct: 831 KNFVEMMGGRIWVESIEGQGSLFAFT 856



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/433 (10%), Positives = 116/433 (26%), Gaps = 65/433 (15%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G+  +         +L     ++  L D      +  D++G IL AN++        G+ 
Sbjct: 51  GLQRQDLRLAQIQGELEASRDLYSRLHDFAPIGFFSFDRSGTILQANLAGADLL---GVQ 107

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKN---------FCETVSTLEHGNNKSYKIVRVL 283
            +  +G S   F  E  +    +                CE   +   G  +  +I   +
Sbjct: 108 REYLLGRSFTAFVAEEDQSAFLAHGEAAFASSATAATARCELRLSPRGGGVRHVQIASAV 167

Query: 284 NSFGEAGIAI-------------DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
                  + +             D++  +  +  L  + E    I  N  + I    + +
Sbjct: 168 MPDRPDALGLSSRDGRFCLSAVQDITARVQADRALKDSEEKYRGIFENAPLGIFRATRQQ 227

Query: 327 YLQFHNRSFVEL--WEIDLAFLA-----------TNPSNDELLEFLRSANKLPEQLNWKT 373
                N +F  +  +E     LA                   L+ + S   +  Q + + 
Sbjct: 228 SYTSVNPAFARMHGYESPAQLLAETGDAACRYCADPAERQRFLDRVDSQGLVANQESCRL 287

Query: 374 WKEN----IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
            ++       +  K++ T ++ ++                        +++ +   E   
Sbjct: 288 RRDGTKFWALTTLKAAGTPQEPYYE-------------------GFVADISQRKAAEEAL 328

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                      +     + +   + RI   N     +     + +         A     
Sbjct: 329 RRSETRFRSLFETAGSLIVLLDVNLRILEFNRKAEQVTGYARSDVLGQEFSTLFAPEARE 388

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                    +        +   +   G + ++  ++      P      +    ++T   
Sbjct: 389 ELGARLLSVIGHRRERDLEQVVRGRDGRISVILWNMTRLEGSPESLNGVIAVGQDITAQK 448

Query: 550 RAERALTEKNEAL 562
            AE+ L      L
Sbjct: 449 MAEKQLRLNQARL 461



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 87/294 (29%), Gaps = 38/294 (12%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDL 343
           EAG+     +   +  +L  + ++   L     +    FD++  +   N +  +L  +  
Sbjct: 49  EAGLQRQDLRLAQIQGELEASRDLYSRLHDFAPIGFFSFDRSGTILQANLAGADLLGVQR 108

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            +L           F+   +   +       +    S   ++    +    P G  +  +
Sbjct: 109 EYLLGR----SFTAFVAEED---QSAFLAHGEAAFASSATAATARCELRLSPRGGGVRHV 161

Query: 404 ---------------VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
                          ++S      +   +++T +V  +       +      ++   G+ 
Sbjct: 162 QIASAVMPDRPDALGLSSRDGRFCLSAVQDITARVQADRALKDSEEKYRGIFENAPLGIF 221

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                      NPAF  +   E    SP   +        RY  +      F   + S  
Sbjct: 222 RATRQQSYTSVNPAFARMHGYE----SPAQLLAETGDAACRYCADPAERQRFLDRVDS-- 275

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV------NVTDSVRAERALT 556
               + Q +  L  D    +++  L  A T           +++    AE AL 
Sbjct: 276 QGLVANQESCRLRRDGTKFWALTTLKAAGTPQEPYYEGFVADISQRKAAEEALR 329


>gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 780

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 92/416 (22%), Positives = 170/416 (40%), Gaps = 32/416 (7%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLETK---------------YNTLVKVQGETIDHLS 444
            V +  +   G +   F  +   ++ E +                    +     ++ LS
Sbjct: 217 RVQIKRHDEIGLLSNGFNQMLGVLEQEEQQLRLIQQSLTQSNQALRQSEEKFRRLVESLS 276

Query: 445 EGVAVF--GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
               ++    +G  +  +P+ R++   +                 +          +   
Sbjct: 277 SEYFLYSHNTEGVFEYVSPSIRTVLGYDPQEFMTHYATYFTENPINMQAVNHTEASIRGE 336

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKN 559
              S+  E  + QG    L   VLEY I    + + +       +VT+  RAE  L    
Sbjct: 337 QQASYVIEIFNKQGQAVRLD--VLEYPIFD-KDGRVIAVEGLAHDVTERHRAEFELLTAK 393

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A+  K+ F+  +S+E+R+P+ +I+G  +LL  S    L  +Q  Y++    +   
Sbjct: 394 EQAEAANRTKSEFLAMMSHEIRTPMNSILGMAELLSES---PLTPEQQGYLKIQRRAGHG 450

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDILDL+ ++AG ++L      L +LL  V   +     E  + +++    ++ +
Sbjct: 451 LLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENLARERGLALRLERMEEIPT 510

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
               DR RL QI   ++ NA+ F+  GS  + ++ + D+  + +F V ++G  I E    
Sbjct: 511 LCQGDRARLRQIMVNLVGNAIKFTHDGSVKISVEKSSDDATNLLFHVIDSGIGIAEKDQS 570

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           SVF RF        R   G GLGL+I    + L GG + + S+    +     +P 
Sbjct: 571 SVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLKSALGEGSCFTFTLPL 626


>gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 791

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 158/358 (44%), Gaps = 10/358 (2%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             ++     V +    G I+  NP F  L       +         +   S  +      
Sbjct: 249 RAVEQSPASVVITDAQGNIEYVNPKFCQLTGYSAQEVLGKNPRLLKSGEMSPNFYRDLWH 308

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            +   +    +   ++  G+L   + S+             +    ++T   + ER L +
Sbjct: 309 TVTTGLEWHGEFYNRAQNGSLFWEAASISAIRSEQGKITHFVAVKDDITARKKLERELQQ 368

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             +    ++  K+ F+  +S+E+R+P+  I+G ++LL  S   +L+ +Q + +     ++
Sbjct: 369 ARDRAESSNRAKSEFLALMSHEIRTPMNAILGMSELLAES---NLSGEQRELLTVQRRAA 425

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+NDILDL+ V++G ++L+++ + L D   E++     +  + N+   +  +  L
Sbjct: 426 LALLDLINDILDLSRVESGRLELDHAPMHLPDFFIEIQDLFRQQAIKKNLAFSITLEDDL 485

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPE 732
             ++ ADR RL Q+   ++ NA+ F+ +G   + ++     G+ +   FSV ++G  IP 
Sbjct: 486 PKTYFADRARLRQVMINLVGNAIKFTQQGGVWISVERLSQQGEMVKLKFSVVDSGCGIPS 545

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +    +F  F            G GLGL+I +  + L GG + + S+    +  +  +
Sbjct: 546 EAQSQIFEPFTQADAYVTRHHGGTGLGLTISQRLVQLFGGTLQVESTPNQGSRFSFIL 603



 Score = 45.7 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 18/145 (12%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-AFLATNPSNDELLEFLRS 361
           ++    +  +     ++ I D    +++ N  F +L        L  NP        L  
Sbjct: 242 EEYAKIFRAVEQSPASVVITDAQGNIEYVNPKFCQLTGYSAQEVLGKNP-------RLLK 294

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH---VIVTSNPRGGTIWMF-- 416
           + ++        W      +    E +       NG        I       G I  F  
Sbjct: 295 SGEMSPNFYRDLWHTVTTGLEWHGEFYN---RAQNGSLFWEAASISAIRSEQGKITHFVA 351

Query: 417 --ENLTVQVDLETKYNTLVKVQGET 439
             +++T +  LE +          +
Sbjct: 352 VKDDITARKKLERELQQARDRAESS 376


>gi|85705883|ref|ZP_01036979.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
 gi|85669471|gb|EAQ24336.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
          Length = 646

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 95/446 (21%), Positives = 181/446 (40%), Gaps = 18/446 (4%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           ANKL E+   +   E +    ++     +     +   L   +            EN  V
Sbjct: 4   ANKLAEERRARLAAERLLEQKQAELQAANRKLGKHALALSHEIHETRAEVQTVRDENQRV 63

Query: 422 QVDLETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           + DL   Y       +    +I+ + +G A F  D R+  +N A+ +++   E      +
Sbjct: 64  KSDLNDAYQKVEIAERRLWHSIETIQDGFAFFDADSRMIAANNAYLAVFDGLEAVKPGVS 123

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNA 536
           +I  +                        D  +        + L +   ++         
Sbjct: 124 YIEILQFITEEGVVNIGALKPHEWREKMLDRWQSFAPEPEVIRLWNGHYIKLIDQRGHGG 183

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +   +N+TD++R E+ LTE       A+  K+SF+ ++S+E+R+P+  ++G  +LL  
Sbjct: 184 DMVSLALNITDTIRHEKELTEARRRAEAANRAKSSFLANMSHEIRTPMNGVVGMAELLME 243

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L  +Q  +   I  S   LL ++ND+LD + ++A  + L+     L   ++E+  
Sbjct: 244 T---DLTEEQRLFASTIKTSGEALLVIINDVLDYSKIEAEKLVLHAEPFDLERCIHELVT 300

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +     +  + + V  D  L + FV D  R+ QI + +L NA+ F+  G   V +    
Sbjct: 301 LMQVNARDKGLELLVDYDLFLPTRFVGDPGRIRQIMTNLLGNAVKFTESGHVLVRVTGVH 360

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
            + +       +V++ G  IP D    +F  F  V +    +  G GLGL+I +  I L 
Sbjct: 361 PDAEGRASVHVTVEDTGIGIPPDKIDHIFGEFNQVDDERNRKFEGTGLGLAISQKLIRLM 420

Query: 769 GGHVSISSSDEGVTT--INCRIPSKE 792
           GG + + S     +T   +  +P  E
Sbjct: 421 GGKIWVDSEPGKGSTFGFSVSLPVAE 446



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 75/203 (36%), Gaps = 5/203 (2%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
              +  ++    + +   E+ +  + +++         +S   H      + VR  N   
Sbjct: 4   ANKLAEERRARLAAERLLEQKQAELQAANRKLGKHALALSHEIHETRAEVQTVRDENQRV 63

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           ++ +     K      +L H+ E +       A FD +  +   N +++ +++  L  + 
Sbjct: 64  KSDLNDAYQKVEIAERRLWHSIETIQ---DGFAFFDADSRMIAANNAYLAVFD-GLEAVK 119

Query: 348 TNPSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              S  E+L+F+     +    L    W+E +   ++S     +   L NG  + +I   
Sbjct: 120 PGVSYIEILQFITEEGVVNIGALKPHEWREKMLDRWQSFAPEPEVIRLWNGHYIKLIDQR 179

Query: 407 NPRGGTIWMFENLTVQVDLETKY 429
              G  + +  N+T  +  E + 
Sbjct: 180 GHGGDMVSLALNITDTIRHEKEL 202


>gi|307824658|ref|ZP_07654882.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307734312|gb|EFO05165.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1278

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 119/648 (18%), Positives = 243/648 (37%), Gaps = 49/648 (7%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
            I ++++       +L       +    S+   V        +++ N ++++ T   G   
Sbjct: 495  IRTDISRIKKAELRLRLLERAVEASASSISM-VDVNKPGMPLIYVNPAFERIT---GYSR 550

Query: 234  QKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVST-LEHGNNKS--YKIVRVLNS 285
             +AIG + +        +     + +     +     +    ++G       +I  V + 
Sbjct: 551  DEAIGRNPRFLQGKETDQPGVDEIRAVLQEGRAGGALLHNYRKNGTPYWNDLRIAPVHDE 610

Query: 286  FGE----AGIAIDVSKEITVNDQLTHTYEILH--NLTVAIAIFDQNRYL--QFHNRSFVE 337
             G      GIA DV++     D L  + E L        I  +D N        +     
Sbjct: 611  QGRLSHFIGIADDVTERRDAGDALLKSEERLRRSQHYANIGTWDWNIQTGKVICSERIGS 670

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            L+           S    L+ +   ++   Q         +    + +  H+  W  P+G
Sbjct: 671  LFGYPED--KREISFKYFLDGIHPDDR---QKVIDAVDACVQQGAEYNIEHRCVW--PDG 723

Query: 398  QTLHVIVTS---NPRGGT----IWMFENLTVQVDLETKY---NTLVKVQGETIDHLSEGV 447
                ++          GT    + + +++T +   E K       + +    I+++++ V
Sbjct: 724  TVRWLLERGDVVRDGDGTPLNMLGVVQDITHRKFAELKILEKQARLVIFNHIIENVADAV 783

Query: 448  AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS----RYYNESDGWDLFAAI 503
                  G I   NPA   L+      +        +         RY +  +       I
Sbjct: 784  ITIDSVGTISSFNPAAEKLFGYSAAEIINRNVNLLMPEPYRSKHGRYIDLHNAGQPSGII 843

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEAL 562
                +   +   GT+  L    L  +++ + ++   +    ++++  + E+ +    +  
Sbjct: 844  GKQLELPGQHKDGTIFSLE---LAVTLMEIDDSKHFVGILRDISERKQYEQEIIAARDEA 900

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              A+  K+ F+ ++S+ELR+P+  I+GF  LL+      LN  Q+ YV+ I  +   LL 
Sbjct: 901  ESANNAKSEFLSNMSHELRTPMNAILGFGQLLEIEA--GLNEDQADYVDEILKAGHHLLE 958

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            L+N++LDLA +++G + L+   +   +L+ E    I        I I   + G      A
Sbjct: 959  LINEVLDLARIESGNINLSLEPLSCAELIGECLTLIKPIAQVRGITINDAAIGD-YVIRA 1017

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            DR RL Q+   +LSNA+ ++     V+++ A  +G     V + G  IP    + +F  F
Sbjct: 1018 DRTRLKQVLINLLSNAIKYNRPQGEVLVQVAVQDGFVRLEVSDTGYGIPATRRQELFQPF 1077

Query: 743  VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                       G G+GL+I    + + GG + + S +    T    +P
Sbjct: 1078 SRLGVEDADIEGTGIGLTISRRLMKMMGGAIGMDSEEGRGCTFWIELP 1125


>gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 676

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 105/532 (19%), Positives = 210/532 (39%), Gaps = 46/532 (8%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
             + ++ R+    G    A  +++  +   +LT    I+  L   IA    +  +   N 
Sbjct: 17  RPARRLGRLTGRTGATCPAAHMAEAAS---RLTRLSSIIAALDQGIAFVAPDGVVVEIND 73

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            ++ L ++    +   P    +L+         E  +++        +++    H     
Sbjct: 74  RYLTLLDLPREAVLGQPL--AILDL--------ETEDYQA--GAFLDLFRRGAAHAPVSF 121

Query: 394 LPNGQTLHVIVTSNP---RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
                   V     P    G   G I    ++T  V+             + I      +
Sbjct: 122 DRRLCDRDVTAKLQPVLEDGVFTGLIVSLIDVTPLVEARLSVEREKSFLEQVITIAGAAI 181

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            +   D  +   N  F ++     +        + +         ES      A    + 
Sbjct: 182 CIVNRDDVVVTINDEFTAITGYSRD--------QALGRRRGELLRESPPSPCPARPGDAS 233

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             +R+S   T +    ++L+ +  P+ ++Q + T     +S      L        +A  
Sbjct: 234 VQKRQSQILTRDGRRVTILK-NAAPIRDSQGLATGG--IESFADVSDLIRARVEAEEASR 290

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K++F+ ++S+E+R+PL  I+G + LL  +     + +Q + +E + ++   LL ++ND+
Sbjct: 291 MKSAFLANMSHEIRTPLNAIMGLSQLLLKT---GPSPQQRECLETMRSAGEGLLVVLNDV 347

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQR 686
           LD + ++ G +++    + L+ LL E+++ +A    E  + + +  D KL    V D  R
Sbjct: 348 LDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIERDPKLPRVAVCDPVR 407

Query: 687 LLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           L QI   +LSNA+ F+  G  V+        KA        F V++ G  IPE++ + +F
Sbjct: 408 LKQILLNLLSNAIKFTPSGRVVLAAALPYPPKAEDAPTPVQFRVRDTGPGIPEELRERIF 467

Query: 740 NRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH-VSISSSDEGVTTINCRI 788
             FV           G GLGLSI +  + L GG  +S+ S     +T +  +
Sbjct: 468 EPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSVDSQPGKGSTFHFTL 519


>gi|221207869|ref|ZP_03580876.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221172366|gb|EEE04806.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
          Length = 751

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 103/502 (20%), Positives = 193/502 (38%), Gaps = 32/502 (6%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L+ L   +   D N  L + N +   L        A     D L    R   ++ 
Sbjct: 112 QFEALLNALPDGVIAADTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRV- 170

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--------RGGTIWMFEN 418
                 +  E+     +++   +       G+ + V  T+ P         G  + +   
Sbjct: 171 ----QTSALEHALGGTRTT-CERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLL--- 222

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
                  +       +V+   +D   + +     D RI   NPA + ++  +E       
Sbjct: 223 --RDASADRARADAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRR 280

Query: 479 HIRNIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSII 531
               IA    + +     +D    I+          D  R         +     +   +
Sbjct: 281 FDSLIAMRWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVAL 340

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +   +T         + R+ R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ 
Sbjct: 341 SITLRETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWI 400

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L+ S   +L   + Q ++ I  S+  L  +V DILD +++  G ++L+   + +  L 
Sbjct: 401 EVLRNSGDDTL---RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLF 457

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V  +  T      I ++  S         D +RL Q+ S ++SNA+ F+  G  V + 
Sbjct: 458 ADVVAAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVS 517

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            A D+   + +V + G  I  +    VF+ F          RRG+GLGLSIV   + LHG
Sbjct: 518 VAHDDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHG 577

Query: 770 GHVSISSSD-EGVTTINCRIPS 790
           G V + S+     TT   ++P+
Sbjct: 578 GTVVVDSAGRNRGTTFTVKLPA 599



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 12/162 (7%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT-ETEGIVFQKAIGESRKLFKEEIKKRMI 253
           F+ L ++L   V   D    + + N +              +A+ +  +L   + ++   
Sbjct: 113 FEALLNALPDGVIAADTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQT 172

Query: 254 SSSALEKNFCET---VSTLEHGNNKSYKIVRVLNSFGEAGIAID--------VSKEITVN 302
           S+         T      L     +   +        +A   +D         S +    
Sbjct: 173 SALEHALGGTRTTCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 232

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           D       ++     A+   D++  +   N +   ++  D  
Sbjct: 233 DAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEE 274


>gi|187930424|ref|YP_001900911.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187727314|gb|ACD28479.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 1436

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 108/518 (20%), Positives = 197/518 (38%), Gaps = 42/518 (8%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
             E T+  QL+    ++  +   +   D  +     N +F  ++    A L      +   
Sbjct: 555  AEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASLLGRTPQELGL 614

Query: 354  -------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                    L +  + A ++ E    +   +      ++     + +HLP+GQ        
Sbjct: 615  YSVSNTSPLSDINQRAAQISESTREELIIDTPDGQSRNVLYWIEPFHLPDGQP------- 667

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-----DGRIKLSNP 461
                GT+    +++   + + +   L +   E  + L   V  F        GRI     
Sbjct: 668  ---AGTVASLVDISEIREAQARAERLEQRLREVTESLPALVYQFELPPGQVQGRITYVAG 724

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                    +   L        +           D   + A  +T  D + + +     + 
Sbjct: 725  KAYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTVLVSAQQLTPLDQQFRHVSADGVV- 783

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVS 577
                L    IP   A     +      V AER    AL     A   A   K+ F+  +S
Sbjct: 784  --RWLHARSIPHREADGRTVWNGYLSDVTAEREQADALEAAKNAAESALHAKDRFLAMMS 841

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +E+R+P+  ++G  +LL+ +K   L  +Q Q V  +  S   LL++++DILD A ++AG 
Sbjct: 842  HEIRTPMNGVLGLVELLQQTK---LEGEQKQMVSLVQDSGRALLHILDDILDYAKIEAGR 898

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
            + ++ +   L ++ +     +A++ HE ++ + V     +  S   D  RL QI   +LS
Sbjct: 899  LDISPAATDLREVFDGTVGLLASRAHEKSLAVHVTVAADVPASVSVDSIRLRQILFNLLS 958

Query: 697  NAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            NA+ F+  GS  +     +   D    I SV + G  I   +  ++F  FV       RR
Sbjct: 959  NAIKFTDTGSVRLSAECARVTDDTAHLIISVTDTGIGISPAVQATLFAPFVQAERSTTRR 1018

Query: 753  --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGL+I      L GG + + S+    T +   +
Sbjct: 1019 YGGTGLGLAISRQLAGLMGGKLVMESAQGQGTAVTLEL 1056



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 83/295 (28%), Gaps = 37/295 (12%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E  +     + L+  +S  + L +++ F +  +D A   +  N ++           
Sbjct: 545 LRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASL 604

Query: 234 QKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIVR 281
                +   L+              ++   E    E +     G ++        + +  
Sbjct: 605 LGRTPQELGLYSVSNTSPLSDINQRAAQISESTREELIIDTPDGQSRNVLYWIEPFHLPD 664

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIF-----DQNRYLQFHN 332
                G     +D+S+      +     + L     +L   +  F          + +  
Sbjct: 665 -GQPAGTVASLVDISEIREAQARAERLEQRLREVTESLPALVYQFELPPGQVQGRITYVA 723

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
               E   +    L    S  ELL       ++ + +        + S  + +   +   
Sbjct: 724 GKAYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTV--------LVSAQQLTPLDQQFR 775

Query: 393 HL-PNGQTLHVIVTSNP----RGGTIW--MFENLTVQVDLETKYNTLVKVQGETI 440
           H+  +G    +   S P     G T+W     ++T + +               +
Sbjct: 776 HVSADGVVRWLHARSIPHREADGRTVWNGYLSDVTAEREQADALEAAKNAAESAL 830



 Score = 42.2 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 88/306 (28%), Gaps = 35/306 (11%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
            L ++ ++       +  QLS   +L+       +  D       +          P+  
Sbjct: 544 QLRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRAS 603

Query: 110 -----TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI--------- 155
                   L   +         +++   ++  E    +L+ +T +  +  +         
Sbjct: 604 LLGRTPQELGLYSVSNTSPLSDINQRAAQI-SESTREELIIDTPDGQSRNVLYWIEPFHL 662

Query: 156 -EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            +G+ +G+ A L  + +  I    A      ++L         L    +         G 
Sbjct: 663 PDGQPAGTVASL--VDISEIREAQARAERLEQRLREVTESLPALVYQFELPPGQV--QGR 718

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM-----ISSSALEKNFCETVSTL 269
           I +      +    +       +     L  E+ ++RM     +S+  L     +     
Sbjct: 719 ITYVAGKAYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTVLVSAQQLTPLDQQFRHVS 778

Query: 270 EHGNNKSYKIVRVLNSFGEA-----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
             G  +      + +   +      G   DV+ E    D L        +     A+  +
Sbjct: 779 ADGVVRWLHARSIPHREADGRTVWNGYLSDVTAEREQADALEAAKNAAES-----ALHAK 833

Query: 325 NRYLQF 330
           +R+L  
Sbjct: 834 DRFLAM 839


>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1526

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 131/688 (19%), Positives = 249/688 (36%), Gaps = 101/688 (14%)

Query: 187  KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
             L         + D+   LV   D  G IL  N + ++ +       +  +     L   
Sbjct: 400  SLKQERDFTNAVIDTAGALVVVMDPEGRILRFNRAAEQLSGYSLAEVKNRLLWDLGLIPP 459

Query: 247  -------EIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSFGEA----GIAI 293
                   +  +++  + +L  N  E     + G  +   +    ++N+ GE     G  I
Sbjct: 460  EDVPGVKQAFEQLKGNHSLFLNRHENFWRTKQGALRLISWSNTALINAAGEVEFVMGTGI 519

Query: 294  DVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            D++     E+ + +      ++  N T  I   D   +  + NR++ E    D A +   
Sbjct: 520  DITDRKLAELALKESEERYRDLFENATDLIQSVDAEGHFLYVNRAWKETLGYDEAQVYQM 579

Query: 350  PSNDELLEFLRSANKLPEQLNWKTWKENIFS---VYKSSETHKDTWHLPNGQTLHVIVT- 405
               D L              + +   + +F      +  E  +  +    G+T+ +    
Sbjct: 580  TLFDIL------------HPDCREHCQALFQKLLAGEKLERVETAFLTATGETVWLEGNV 627

Query: 406  --SNPRGGTI---WMFENLTVQVDLETKYNTLVKVQG----------------ETIDHL- 443
                  G  +    +F N+T Q     +     +                   E ++   
Sbjct: 628  SCRFEDGVMVATRGIFRNITEQKKAAEELERQNRRAQLLANLSLKIRESLDIAEILETAV 687

Query: 444  --------SEGVAV--FGPDGRIKLSNPAFR-----SLWKTEENRLSPGTHIRNIAATCS 488
                    ++ V V  F PDG   +SN   +      L +  E+      + +  +    
Sbjct: 688  TEIQALLKADRVLVYRFQPDGSGIISNEKTQPGIPSLLGEVIEDPCFQEKYAQLYSQGRV 747

Query: 489  RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
            R  ++ +   L    +      +      + L  +  L   ++    +          + 
Sbjct: 748  RVVSDVESEGLEPCYLELLQKMQVRANMVVPLFLEQQLWGLLLAHQCSGPRQWQPFEMEL 807

Query: 549  V-----------------RAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +                   ER     L +  +A  +A + K+SF+  +S+E+R+P+  +
Sbjct: 808  LSQLANQIGIALTQAALLERERKRSLELEQARKAAEQAAQAKSSFLATMSHEIRTPMNAV 867

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            +G T LL  +    LN++Q  +VE I  S   LL L+NDILD + ++AG M+L      L
Sbjct: 868  LGMTGLLLET---PLNAEQRDFVETIRISGDALLTLINDILDFSKLEAGEMELEILDFDL 924

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
               L EV    A   H   + + V+   ++  ++  D  RL QI + ++SNA+ F+ +G 
Sbjct: 925  RSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRLRQILNNLVSNAIKFTHQGE 984

Query: 707  TVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             VI    L+    +     SV++ G  IP      +F  F        R   G GLGL+I
Sbjct: 985  VVIQAEVLQETATHAHLKLSVRDTGIGIPAAAQSKLFQPFSQVDASTTRKYGGTGLGLAI 1044

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRI 788
             +    L GG +S+ S +   +T +  +
Sbjct: 1045 CKQLTELMGGTISLQSQEGQGSTFSVEL 1072



 Score = 37.6 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----KNTE 227
           G   ++ +  L    L      ++ LF++   L+   D  G  L+ N ++K        +
Sbjct: 516 GTGIDITDRKLAELALKESEERYRDLFENATDLIQSVDAEGHFLYVNRAWKETLGYDEAQ 575

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---IVRVLN 284
              +     +    +   + + +++++   LE+     ++    G     +     R  +
Sbjct: 576 VYQMTLFDILHPDCREHCQALFQKLLAGEKLERVETAFLTAT--GETVWLEGNVSCRFED 633

Query: 285 SFGEA--GIAIDVSKEITVNDQL---THTYEILHNLT 316
               A  GI  +++++    ++L       ++L NL+
Sbjct: 634 GVMVATRGIFRNITEQKKAAEELERQNRRAQLLANLS 670


>gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 589

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 159/392 (40%), Gaps = 30/392 (7%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q+           +     +  +++GV  F  DG I + NP
Sbjct: 224 ILTRDEIGELATAFNTMGRQLKFNMDALKQEKEQLRNILSSMADGVLTFNRDGAILIMNP 283

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                    E  L    H        ++   ++   +  +A++    +  K     +E +
Sbjct: 284 PA-------EMFLQNWYH--------NQAAKDAPLPEGLSALLAKVVETEKEQTDEIE-I 327

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +         PL N   +   V +   +  ER L          D++++ F+ +VS+ELR
Sbjct: 328 NGRYYVMIASPLYNLSRIRGVVTIIRDMTEERKL----------DKLRDDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  + G+++ +      S   ++ ++ + I   +  +  LVN++LDLA ++AG     
Sbjct: 378 TPVAMLQGYSEAIIDDIAAS-EEEKKEFAKIIYDETLRIGRLVNELLDLARMEAGHFSFR 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +  N  +  V         E  I +   +     +   D  R+ Q+ + ++ NA+  
Sbjct: 437 MEPVSFNSFIERVTHKFNGIAKEKGIDLVCETSDSDLTLEIDADRIEQVLTNLIDNALRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +S    V +K     G     V++NGS IP++    VF RF        R   G GLGL+
Sbjct: 497 TSSNGYVKVKEEEAPGGVYVHVEDNGSGIPDEDLPFVFERFYKADKARTRGKSGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I ++ +  HGG + + S     TT +  +P K
Sbjct: 557 IAKNIVEGHGGRIFVKSKLGEGTTFSFFLPKK 588



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 49/160 (30%), Gaps = 29/160 (18%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +  +      IL ++   +  F+++  +   N                N  +++     
Sbjct: 250 ALKQEKEQLRNILSSMADGVLTFNRDGAILIMNP--------PAEMFLQNWYHNQ----A 297

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTIWM 415
                LPE L+    K       ++ E         NG+   +I +     +   G + +
Sbjct: 298 AKDAPLPEGLSALLAKVVETEKEQTDEIEI------NGRYYVMIASPLYNLSRIRGVVTI 351

Query: 416 FENLTVQVDLETKYNT-------LVKVQGETIDHLSEGVA 448
             ++T +  L+   +         ++     +   SE + 
Sbjct: 352 IRDMTEERKLDKLRDDFIANVSHELRTPVAMLQGYSEAII 391


>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1523

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 133/688 (19%), Positives = 254/688 (36%), Gaps = 101/688 (14%)

Query: 187  KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
             L         + D+   LV   D  G IL  N + ++ +       +  +     L   
Sbjct: 400  SLKQERDFTNAVIDTAGALVVVMDPEGRILRFNRAAEQLSGYSLAEVKGRLLWDLGLIPP 459

Query: 247  -------EIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSFGEA----GIAI 293
                   +  +++  + +L  N  E     + G  +   +    ++N+ GE     G  I
Sbjct: 460  EDVPGVKQAFEQLKGNHSLFLNRHENFWRTKQGALRLISWSNTALINAAGEVEFVMGTGI 519

Query: 294  DVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            D++     E+ + +      ++  N T  I   D   +  + NR++ E    D A +   
Sbjct: 520  DITDRKLAELALRESEERYRDLFENATDLIQSVDAEGHFLYVNRAWKETLGYDEAQVYQM 579

Query: 350  PSNDELLEFLRSANKLPEQLNWKTWKENIFS---VYKSSETHKDTWHLPNGQTLHVIVTS 406
               D L              + +   + +F      +  E  +  +   +G+T+ V    
Sbjct: 580  TLFDIL------------HPDCREHCQALFQKLLAGEKLERVETAFLTASGETVWVEGNV 627

Query: 407  N---PRGGTI---WMFENLTVQVDLETKYNTLVKVQG----------------ETIDHL- 443
            N     G  +    +F N+T Q     +     +                   E ++   
Sbjct: 628  NCRFEDGVMVATRGIFRNITEQKKAAEELERQNRRAQLLANLSLKIRESLDIAEILETAV 687

Query: 444  --------SEGVAV--FGPDGRIKLSNPAFRS-------------LWKTEENRLSPGTHI 480
                    ++ V V  F PDG   +SN   +               ++ +  +L     +
Sbjct: 688  TEIQALLKADRVLVYRFQPDGSGIISNEKTQPGIPSLAGEVIEDPCFQEKYAQLYSQGRV 747

Query: 481  RNIAATCSR-----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            R ++   S      Y        + A ++     E++     L        ++    +  
Sbjct: 748  RVVSDVESEGLEPCYLELLQKMQVRANMVVPLFLEQQLWGLLLAHQCSGPRQWQPFEMEL 807

Query: 536  ----AQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                A  +   +     +  ER     L +  +A  +A + K+SF+  +S+E+R+P+  +
Sbjct: 808  LSQLANQIGIALTQAALLERERKRSLELEQARKAAEQAAQAKSSFLATMSHEIRTPMNAV 867

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            +G T LL  +    LN++Q  +VE I  S   LL L+NDILD + ++ G M+L      L
Sbjct: 868  LGMTGLLLET---PLNAEQRDFVETIRVSGDALLTLINDILDFSKLEVGEMELEILDFDL 924

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
               L EV    A   H   + + V+   ++  ++  D  RL QI + ++SNA+ F+ +G 
Sbjct: 925  RSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRLRQILNNLVSNAIKFTHQGE 984

Query: 707  TVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             VI    ++    +     SV++ G  IP+D    +F  F        R   G GLGL+I
Sbjct: 985  VVIQAELMQETATHVQLRLSVRDTGIGIPKDAQTKLFQPFTQVDASTTRKYGGTGLGLAI 1044

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRI 788
             +    L GG + + S +   +T +  +
Sbjct: 1045 CKQLTELMGGRIFLESEEGRGSTFSLEL 1072



 Score = 38.0 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----KNTE 227
           G   ++ +  L    L      ++ LF++   L+   D  G  L+ N ++K        +
Sbjct: 516 GTGIDITDRKLAELALRESEERYRDLFENATDLIQSVDAEGHFLYVNRAWKETLGYDEAQ 575

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---IVRVLN 284
              +     +    +   + + +++++   LE+     ++    G     +     R  +
Sbjct: 576 VYQMTLFDILHPDCREHCQALFQKLLAGEKLERVETAFLTA--SGETVWVEGNVNCRFED 633

Query: 285 SFGEA--GIAIDVSKEITVNDQL---THTYEILHNLT 316
               A  GI  +++++    ++L       ++L NL+
Sbjct: 634 GVMVATRGIFRNITEQKKAAEELERQNRRAQLLANLS 670


>gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 963

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 102/529 (19%), Positives = 207/529 (39%), Gaps = 47/529 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S+E ++         IL  +   I + D   +  F NR   ELW++++         ++
Sbjct: 217 ASREASLRASEQKMLSILEGVDAYIYLKDTEGHYLFANRPLRELWQVEM---------ND 267

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSET---HKDTWHLPNGQTLHVIVTSNP--- 408
           L+ F        E +   T ++    V +  ET    +       G+T++   T  P   
Sbjct: 268 LIGFGDEKFFNAESVV--TLRQTDSRVLRGGETLHSEEVNTIAATGKTVYYQSTKLPLYR 325

Query: 409 RGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             G+I+       ++T +  +E       +           G+  +     +   + +  
Sbjct: 326 EDGSIYALCGISVDITERKRIEEALRVNEERLKLATRAGGIGIWDWDVAANVLTWDDSMY 385

Query: 465 SLWKTEENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            L+              +  +        +      L      S +       G +  + 
Sbjct: 386 LLYGLCAGDFGGAYDAWLSTLHPDDRALSDAEIQAALRGEREFSPEFRVIRPDGEIRKIK 445

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA----------------- 565
                Y        + + T  ++TD  R E  L +  + L +                  
Sbjct: 446 AFAKVYRDESGSPTRMVGTNFDITDLKRIEEELRKYKDHLEEEVQSRTSELVLARNAAET 505

Query: 566 -DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +  K+ F+ ++S+ELR+PL  ++GF+ LL+   L  L+ +Q   +  I+ S   LL L+
Sbjct: 506 ANLAKSVFLANMSHELRTPLNAVLGFSSLLRKDPL--LSKEQRTNLNIINRSGEYLLALI 563

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           ND+L++A ++AG ++L+ + + L  L+ +V   +  +  E  +++ +    +   ++  D
Sbjct: 564 NDVLEMAKIEAGWVQLDSAPLDLGMLVRDVTDMMQVRAQEKGLQLLIDQSSEFPRYIRGD 623

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             RL QI   ++ NA+ F+ +G   +   LK        +  V++ GS I  +  + +F 
Sbjct: 624 EARLRQILINLVGNAVKFTQQGGVTVRFGLKPNTTPAHLLIEVEDTGSGIAAEDQEKIFE 683

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV       ++G GLGL+I   F+ L GG V+++S     +     +P
Sbjct: 684 PFVQVGEVAMQKGTGLGLTITRQFVQLMGGSVTLNSKPGSGSLFRVELP 732


>gi|227823950|ref|YP_002827923.1| sensor protein [Sinorhizobium fredii NGR234]
 gi|227342952|gb|ACP27170.1| sensor protein [Sinorhizobium fredii NGR234]
          Length = 917

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 170/382 (44%), Gaps = 9/382 (2%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +N   +  LE +     +     ++ +S+G  ++ PD +I ++N  +  ++ + +     
Sbjct: 268 QNAIEKKKLEDEAERQRRTIAAALEAISDGFVLYDPDDKILVANSRYCEIFPSHKPNELR 327

Query: 477 GTHIRNIAAT-CSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLP 534
           G   R I     ++   + +G      I       R       E    D  +  +   +P
Sbjct: 328 GKSFREILEQNLAKGKVDLEGKAPEEWIEDRLRLHRDPAGLADERRFDDKWVRITKRKIP 387

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  T+  + ++T+  + +  L         A E K+ F+  +S+ELR+PL  IIG++++L
Sbjct: 388 DGGTVAVYTDITELKQRQAELERAKSNAEAASEAKSRFLASMSHELRTPLNAIIGYSEML 447

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                    ++    +E I+++   LL L+NDILDL+ ++A  M++   +  +  LL +V
Sbjct: 448 IEEAHDHGENELVPDLEKIASAGRHLLALINDILDLSKIEANKMEVFLESFGVAQLLGDV 507

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++A  M +N        DG LG   +D+ +L Q    +LSNA  F++ G  V L A R
Sbjct: 508 SATVAPLMAKNRNAFVQEFDGDLGEMHSDQTKLRQNLFNLLSNAAKFTT-GGRVTLSARR 566

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               D    +F V + G  +  +    +FN F        R   G GLGLSI  SF  + 
Sbjct: 567 EGRADGDWLVFKVSDTGIGMTPEQLDRLFNAFTQADASTTRNYGGTGLGLSITRSFSRMI 626

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG V++ S     +     +P+
Sbjct: 627 GGIVNVESEAGKGSVFTMEVPA 648



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     Q       L  ++    ++D +  +   N  + E++           S  E+LE
Sbjct: 277 EDEAERQRRTIAAALEAISDGFVLYDPDDKILVANSRYCEIFPSHKPNELRGKSFREILE 336

Query: 358 FLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
              +  K+  E    + W E+   +++      D     + + + +     P GGT+ ++
Sbjct: 337 QNLAKGKVDLEGKAPEEWIEDRLRLHRDPAGLADERRFDD-KWVRITKRKIPDGGTVAVY 395

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDH 442
            ++T     + +            + 
Sbjct: 396 TDITELKQRQAELERAKSNAEAASEA 421


>gi|284165554|ref|YP_003403833.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015209|gb|ADB61160.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 821

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 114/689 (16%), Positives = 245/689 (35%), Gaps = 66/689 (9%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
           ++R +G  F           +    R  G      +     +  ++ E     ++L    
Sbjct: 165 RVRSDGTRF-------WANVVITAIRDDGGQ----LRGFTKVTRDMTERREYEQQLRRER 213

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE----- 247
            + + + +++   +    +   ++ AN    ++   E    +    ES +L+        
Sbjct: 214 DLTERILETVPITIGVVTEDNALVRANRRMLEHFAIEDSAIETYSLESWELYDAAGEPIP 273

Query: 248 --IKKRMISSSALEKNFCETVSTLEHG-NNKSYKIVRVL-----NSFGEAGIAIDV---- 295
              +    +    E  +         G   +   +            G   +AID     
Sbjct: 274 ADEQPWARARERGEPVYDAQRQVEVPGIGRRWLSLNAAPLDDDQAEDGRIVVAIDDITDQ 333

Query: 296 -SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSND 353
             +E  +  +   T ++L    +AIA+ +        N+   E   + D  F+  +    
Sbjct: 334 KERERLLRREYNQTEKLLRTAPIAIAVQNAEGETILTNQRAQESLGLSDQEFIGESDDVG 393

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----R 409
           E   +     +LP     +     +          +     P+ + L   V + P     
Sbjct: 394 EWEIYDSDGERLPTN---EMPAARVLETGNPVFNEELVVDPPDDELLQFRVNATPLHGPD 450

Query: 410 GGT---IWMFENLTV----QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           GG    +   E++T     +  LE + + L     + +  +S+       + R    N  
Sbjct: 451 GGVERVVTAAEDITELKRRERQLEQRKSELETELSDILGRISDAFYALDDEWRFTHLNEQ 510

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                +   + +                Y E     +      +F+   + L        
Sbjct: 511 AAETLQQSRDDVLGRKVWTTFPDDAEGIYREQFQQAMETQEPVNFEVYAEDL-------- 562

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D+ LEY++ P  +  ++  F ++T+    +R L + NE L         F    S++L+ 
Sbjct: 563 DTWLEYNVYPSESGLSIY-FHDITERKEYQRKLEKSNERL-------EQFAYAASHDLQE 614

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  +  +  LL++     L+    +++E+    +  +  +++ +L  + VD       +
Sbjct: 615 PLRMVSSYLQLLESRYSDELDDDGEEFIEFAVDGAERMRKMIDGLLAYSRVDTQGEP--F 672

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + L+ +++ V + +  K+ E +  I   S   L     D  ++ Q+F  ++SNA+++S
Sbjct: 673 EPVDLDTVVDAVCEDLQMKIEETDAEITAES---LPRVRGDESQIQQVFQNLVSNALEYS 729

Query: 703 -SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
             +   V + A R    +I SV++NG  I  D    VF  F     R +  G G+GL++ 
Sbjct: 730 GDEPPQVEITAERARSKWIVSVEDNGIGIDPDDQDRVFEVFERLHSRDKYDGTGIGLALC 789

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  I  H G + I S     TT +  +P+
Sbjct: 790 QRIIERHEGTIWIDSEPGEGTTFSFALPA 818


>gi|229541514|ref|ZP_04430574.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325934|gb|EEN91609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 595

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 151/374 (40%), Gaps = 27/374 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                + +   +     ++++  GV +    GRI L N A   +       L    HI  
Sbjct: 239 KQQMNEIDENEQQLTAVLENMDSGVMLIQTSGRIMLVNRAMEEMTGLSSGELIGKRHIE- 297

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQTML 540
                 + +  S   D        F DE       L    + +L+  I P    + +   
Sbjct: 298 ----AGKSFGLSQLIDRSLKTGERFRDEVH-----LYYPKERILDAHIAPYVGESGELRG 348

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
               + D     R            ++I++ FV +VS+EL++P+T++ GF + L    + 
Sbjct: 349 VVAVLHDVTETRRL-----------EQIRSEFVANVSHELKTPVTSVKGFAETLLDGAMY 397

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +   ++++ I   S  L  L++DILDL+ ++   + L    + + D++ E  Q++  
Sbjct: 398 D-EATLREFLKIIYDESDRLHRLISDILDLSRIEQHRILLKMEQLNVVDVVAETVQTMRK 456

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           ++ +  + + V+   +     AD+ RL QI   +++NA+ ++     + +       +  
Sbjct: 457 RIEKKQLEL-VLPQKRHVMMEADKDRLRQILLNLVTNAIAYTPDKGRIEISLIERENELD 515

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  I E     +F RF         Q  G GLGL+IV+  +  + G + + S +
Sbjct: 516 LIVSDTGIGISEKDLPRIFERFYRVDKARSRQSGGTGLGLAIVKHLVESYHGKIRVESEE 575

Query: 779 EGVTTINCRIPSKE 792
              +T    +P  +
Sbjct: 576 GKGSTFIVTLPRTQ 589



 Score = 44.2 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 59/175 (33%), Gaps = 13/175 (7%)

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
           +S+  +EK++   V     G  +  ++ + +N+           +   +++       +L
Sbjct: 203 VSNRLIEKDYDSRVRVNASGELR--QLTKAINNLAHNLK----QQMNEIDENEQQLTAVL 256

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            N+   + +   +  +   NR+  E+  +    L      +    F  S          +
Sbjct: 257 ENMDSGVMLIQTSGRIMLVNRAMEEMTGLSSGELIGKRHIEAGKSFGLSQLIDRSLKTGE 316

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
            +++ +  +Y   E   D    P       +  S    G + +  ++T    LE 
Sbjct: 317 RFRDEVH-LYYPKERILDAHIAP------YVGESGELRGVVAVLHDVTETRRLEQ 364


>gi|119509677|ref|ZP_01628823.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119465696|gb|EAW46587.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 896

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 99/548 (18%), Positives = 212/548 (38%), Gaps = 40/548 (7%)

Query: 271 HGNNKSYKIVRVL-------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AI 321
           +G    +     +       +     G A D+++     +QL  + E       A+   I
Sbjct: 359 NGEWLWFYSRDTVFNRNVDGSPRQIVGTAFDITERKQAEEQLRLSNERFQLAAAAVNCLI 418

Query: 322 FDQN--RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK---LPEQLNWKTWKE 376
           +D++    +         +    L     +PS +  +E +   ++   L +  ++   + 
Sbjct: 419 YDRDIKNNIVSRTEGLTRILGYSLE--EADPSAEWWIEKVHPEHRERLLNQLTDFFNREN 476

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLV 433
                YK     ++  ++ +      I+  +P G    T+    +++ +   ET      
Sbjct: 477 YYTIEYKMRHKDQEYRYVLD----QGIIVQDPHGQVVRTVGSVTDISERKQAETALRESE 532

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-----ENRLSPGTHIRNIAATCS 488
           +      D + + V      G  +  N  +  L             +   H  ++++   
Sbjct: 533 ERYRYLSDLIPQLVWTCNSQGECEYVNQRWYELTGQMLEEAKGFGWTKVIHPDDLSSVIP 592

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
            +         +   +     ++        L+ +  ++     +       T ++    
Sbjct: 593 EWTQALQRKKPYEQEMRY---QKHDGSYCWHLVRNVAIKDEQGRVVKWFGTATDIDHRKQ 649

Query: 549 VRAERALTEKNEAL-----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           + AER    + E        KA++ K+ FV  VS++LRSPL  I+G+  LL+T +L    
Sbjct: 650 LEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPLNAILGWAKLLRTRQLPPDT 709

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              +  +  I  ++     L+ D+L+++ +  G ++L    + L +++    ++     H
Sbjct: 710 --VTNALATIERNAQSQEKLLEDLLNMSRILRGQLQLEVCPVNLVNIVKASVETAYPSAH 767

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFS 722
              I +  + D  +   V D  RLLQ+   +LSNA+ F+  G  V ++ A+ D+ + +  
Sbjct: 768 AKGIHLASVIDESIPPIVGDTHRLLQVLGNLLSNAIKFTPSGGRVQVQLAKSDDSEILIQ 827

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-V 781
           V + G  I  +    VF+R+       +  G+GLGL+I    + LHGG +   S  EG  
Sbjct: 828 VSDTGLGIKPEFLPHVFDRYRQAHCTAKHSGLGLGLAIARHLVELHGGTIQAHSQGEGLG 887

Query: 782 TTINCRIP 789
            T + ++P
Sbjct: 888 ATFSIKLP 895



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 111/366 (30%), Gaps = 61/366 (16%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQ---------NRYLQFHNRSFVELWEIDLAFLATN 349
             +          + N+     IF           N  + + N +  E  ++        
Sbjct: 133 QELQRSEERFRTSVENMLDCFGIFSAVRYETGEILNFRVDYMNAAACEFSQMSSG--EQG 190

Query: 350 PSNDELLEFLRSANKLPE-----QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
               E+L  +R      E     +      KE +  VY S  + + +      + + + +
Sbjct: 191 EYLGEILLNIRENGLFDECCQVVKTGQPLVKEAL--VYTSLNSQQQST-----RVIDIRI 243

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAF 463
           T    G  +  + ++T +   E K     +      D     + V+     +   +N   
Sbjct: 244 TKMGDG-FVAAWRDVTEKKQAEAKLRESQQFIERIADTTPGILYVYDLMKQQNVYTNSQV 302

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
            +L      ++          +T     + +   +    I  + + E    +  +   + 
Sbjct: 303 INLLGYTCQQIKGMDS--EFLSTLMHPEDRARFLEHLQLINVAENGEILEFEYRMRHANG 360

Query: 524 SVLEY--------SIIPLPNAQTMLTFVNVTDSVRAERALTEKNE----------ALRKA 565
             L +          +     Q + T  ++T+  +AE  L   NE           L   
Sbjct: 361 EWLWFYSRDTVFNRNVDGSPRQIVGTAFDITERKQAEEQLRLSNERFQLAAAAVNCLIYD 420

Query: 566 DEIKNSFVQHVSYELRS-PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +IKN+ V       R+  LT I+G++       L   +     ++E +         L+
Sbjct: 421 RDIKNNIVS------RTEGLTRILGYS-------LEEADPSAEWWIEKVHPE--HRERLL 465

Query: 625 NDILDL 630
           N + D 
Sbjct: 466 NQLTDF 471



 Score = 44.9 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 13/154 (8%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT- 226
           ++   G  ++++E       L      ++ L D +  LVW  +  G+  + N  + + T 
Sbjct: 508 VVRTVGSVTDISERKQAETALRESEERYRYLSDLIPQLVWTCNSQGECEYVNQRWYELTG 567

Query: 227 ----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--V 280
               E +G  + K I          I +   +    +    E       G+   + +  V
Sbjct: 568 QMLEEAKGFGWTKVIHPDD--LSSVIPEWTQALQRKKPYEQEMRYQKHDGSYCWHLVRNV 625

Query: 281 RVLNSFGEA----GIAIDVSKEITVNDQLTHTYE 310
            + +  G      G A D+     +  +     +
Sbjct: 626 AIKDEQGRVVKWFGTATDIDHRKQLEAERDRLLQ 659


>gi|88859369|ref|ZP_01134009.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Pseudoalteromonas tunicata
           D2]
 gi|88818386|gb|EAR28201.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Pseudoalteromonas tunicata
           D2]
          Length = 901

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 92/397 (23%), Positives = 176/397 (44%), Gaps = 25/397 (6%)

Query: 418 NLTVQVDLETKYNTLVKV---QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           NL ++  +E + + +  +   Q   ++  S  +      G I L NPA   +     N L
Sbjct: 367 NLKLEEQVEQRASEIANINLLQKRILEASSYAIITTDIKGIITLINPAGEKMLGYSVNEL 426

Query: 475 SPG-----THIRNIAATCSRYYNES------DGWDLFAAIITSFDDERKSLQGTLELLSD 523
                    H+ +   T ++  ++        G+++F A       +        +    
Sbjct: 427 VGKLNPGIFHLPDEIMTRAQALSDELGTQIEPGFEVFVAKARIGQQDINRWTYVHKEGKQ 486

Query: 524 SVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             ++ SI  L N        +    ++T+ ++ E+AL    +   KA ++K+ F+ ++S+
Sbjct: 487 FQVKLSINSLYNEFNELVGFLGIASDLTEQLKREQALAHAKDRAEKAVKVKSEFLANMSH 546

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  + G   LLK     +L+S     ++    S+  L  ++NDILD + ++AG +
Sbjct: 547 EIRTPMNGLFGVMQLLKQE---NLSSDGKNLLDKALYSAKNLTVIINDILDFSKIEAGKL 603

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L  +   L++L+  +   ++       I +    + K   +  D  R+ QI   I+SNA
Sbjct: 604 TLELTNFKLSELIEHINSDLSVNAFNKQIDLTFEINVKHDFWFGDPIRIRQILLNIISNA 663

Query: 699 MDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           + F++ G   V++ A   +     SV + G  I  D  + +FNRF        R   G G
Sbjct: 664 IKFTNTGGVKVLVNALPTSNGLQISVIDTGIGIAPDAIERLFNRFEQADKSTTRKYGGTG 723

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGLSI +S I+L  G +S++S +   T+ +  IP  +
Sbjct: 724 LGLSISQSLIDLMQGEISVTSEENKGTSFSIMIPLVQ 760


>gi|332666257|ref|YP_004449045.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335071|gb|AEE52172.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 814

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 207/512 (40%), Gaps = 31/512 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S    +  +L +  EI++N    + I D     ++ N +  +L    +  ++        
Sbjct: 48  SSLDDLKQELHYVQEIVNNAQDIVFISDYQGIFRYINPAAAQLLGFAMDEMSGKH----F 103

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIVTSNPRGGTI 413
              +R       +  ++   +N  +        K  +   +  GQ +  +   +      
Sbjct: 104 SALIREDYAEIIRAQYRDQVKNRLASSYLEFPVKNAEEREMWLGQQVSFVYHGDKLFEAH 163

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  ++T       +     +     ++++  G+       +I  + P F  +    E  
Sbjct: 164 SIARDITTLRTAGERLRKSEEKYRSIMENMELGLLEVDSTAKIIRAYPRFCEMVGYPEEE 223

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-- 531
           L        +       ++     D        F   +  +        +  + +++I  
Sbjct: 224 L--------VGKDPKALFSPQGFLDRAQQEEVKFLKGKSVIWEAPLRKKNGSIMWTLINN 275

Query: 532 -PLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P+ N Q     T+   +++T+    +  L    +   +A + + +F+ ++S+E+R+P+ 
Sbjct: 276 TPIYNDQGALVGTLGIHLDITEQKLLQVDLERTRQEAEQARDAEKAFLANISHEIRNPIN 335

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I+G T+LL  +    L+ +Q +YV  +  S+ +L  LV+D+LD++ ++ G M+      
Sbjct: 336 SIVGMTNLLYDTY---LSEEQLEYVNTLKYSADLLHALVSDVLDISKIEQGKMEPQLEDF 392

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
              ++   + ++   ++ +  I+ +      +   F +D   + QI   +++NA  F+ +
Sbjct: 393 DFFEMAKAMCKTFEFRLSQRPIQFQCEVSPSVPQRFRSDSTFINQILINLMNNAFKFTEE 452

Query: 705 GSTVILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLS 759
           G+   L  A+         F VK+ G  IP D    +F RF     A++ QR G GLGL 
Sbjct: 453 GTISCLAEAKFIDQQQWIEFIVKDTGIGIPPDRLPFIFERFNQAGKANKVQRDGTGLGLP 512

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I +  + L GG++ + S+    TT N  +P +
Sbjct: 513 ITKQLVELLGGNIKVQSTPGVGTTFNILLPIE 544


>gi|239909089|ref|YP_002955831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798956|dbj|BAH77945.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 975

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 90/513 (17%), Positives = 203/513 (39%), Gaps = 44/513 (8%)

Query: 299 ITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                 L    E L  +    T AI + D+  ++   NR+  E + + +  +        
Sbjct: 314 EATERDLCRHRETLEAVLNATTDAILVLDEAYHVVMVNRTGAERFGLAVEAMLGQ----- 368

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG 410
                    +L +     + +++      +    + T     G+     +   P      
Sbjct: 369 ------GILELTDAPVAASRRQHYRQAQATGRPVRFTDKRA-GRVYENTIYPIPALAGDR 421

Query: 411 GTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWK 468
             + ++  ++T Q+  +       +            V V   PDGR+   N AF +   
Sbjct: 422 PRLAIYARDVTEQIAADQAVRQSQERLANIFRLSPVIVTVTTLPDGRLLDVNEAFSAYSG 481

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +     I         + +  D   +F A+    D + ++L+ ++ +    +  +
Sbjct: 482 FSREEV-----IDRTPTELGLWAHPGDRDRIFRAVER--DGQVRNLELSMRMRDGRLATF 534

Query: 529 --SIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             S  P+            V+++     E AL    E+   A++ K+ F+  +S+E+R+P
Sbjct: 535 LLSCTPMEAYGRHCLLSVLVDISGRKTMEEALRLAKESAEAANKAKSRFLSTMSHEIRTP 594

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G  D+L+ ++   L+ +Q +++  +  +   L+ L+ DIL+L+ +++G+++L  +
Sbjct: 595 MNTILGMVDVLRGTE---LSGRQQEFLRTLEVAGESLMALLTDILELSKIESGVLELAEA 651

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
                +L  +V   ++ +     + +++ +        V D  R+ QI   ++ NA+ F+
Sbjct: 652 AYDPLELAGQVVALLSPQAQAKGLTLRLEAGKDAPRQAVGDPDRIRQILINLVGNAIKFT 711

Query: 703 SKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + G   +    L A     + +F+V + G  IP +  +++F  F        R   G GL
Sbjct: 712 AAGEVALKLSLLPARLSREELLFAVSDTGIGIPPEKREAIFKPFTQVDSSTTRAYGGTGL 771

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I    ++   G + + S     +   C +P
Sbjct: 772 GLAICALLVDGMNGRLWLESEPGAGSVFYCALP 804


>gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1195

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 96/511 (18%), Positives = 210/511 (41%), Gaps = 37/511 (7%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A        +N++L   + +       + I D + + +  NRS+ E     L  L     
Sbjct: 323 AASDESIRKLNEELDRFFSM---ALDMLCIADLDGHFKRLNRSWEETLGYALDELTGK-- 377

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
             + LEF+      P+ +       +     K      + +   +G    +   S P   
Sbjct: 378 --QFLEFIH-----PDDIPATLAALSDLDANKQILNFINRYRCKDGSYRWIEWRSTPCAN 430

Query: 412 TIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            I+    ++T + + E       +      D +   V  +  D   + +N A+   +   
Sbjct: 431 LIYAAARDITERKNAEAALEESERFMRVLTDIIPGMVGYWDRDLHNRFANIAYLEWFGKT 490

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
             ++  G HIR++        NE         +  + + ER+  + TL     S+     
Sbjct: 491 SEQMR-GIHIRDLMGDELFAKNEPY-------MRAALNGERQRFERTLTKADGSIGYTWA 542

Query: 531 IPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             +P+          +   ++T+    +  L ++ +    A+  K+ F+ ++S+E+R+P+
Sbjct: 543 HYIPDIANGQVRGFFVLVSDITELKLTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPM 602

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G T L+  ++   L+ +Q  ++  +  +S  L+ ++NDILD + ++AG +++    
Sbjct: 603 NAILGLTRLVLETE---LDPRQRDFLLKVYNASQALMEILNDILDYSKIEAGRVEIEQLP 659

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
           I + +++         K+ E  +   +     L + +  D  RL Q+ + ++ NA+ F+ 
Sbjct: 660 ISVEEVVRNTMGLFRAKIEEKGLATIMELASSLPAVLQGDPMRLSQVLNNLVGNAVKFTE 719

Query: 704 KGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
            G   ++++  +++       FSV++ G  + +D    +F  F         +  G GLG
Sbjct: 720 SGEIRIMVEQIQEDCRTVTLCFSVQDTGIGLDKDETARLFQAFTQADSTISRKYGGTGLG 779

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  + L GG +S+SS     +T +  I
Sbjct: 780 LTICQRLVGLMGGSISVSSLKGVGSTFSFVI 810



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 101/292 (34%), Gaps = 33/292 (11%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            + A +    +KL+  +  F  +  +LD L    D  G     N S++   ET G    +
Sbjct: 320 RQKAASDESIRKLNEELDRFFSM--ALDMLC-IADLDGHFKRLNRSWE---ETLGYALDE 373

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETV------STLEHGNNKSYKIVRVLNSFGEA 289
             G+    F          ++  + +  + +         + G+ +  +      +    
Sbjct: 374 LTGKQFLEFIHPDDIPATLAALSDLDANKQILNFINRYRCKDGSYRWIEWRSTPCANLIY 433

Query: 290 GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
             A D+++       L  +   +      +   +  +D++ + +F N +++E +      
Sbjct: 434 AAARDITERKNAEAALEESERFMRVLTDIIPGMVGYWDRDLHNRFANIAYLEWFGKTSEQ 493

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTW--HLPNGQTLHV 402
           +      D + + L + N+   +      ++       K+  +   TW  ++P+     V
Sbjct: 494 MRGIHIRDLMGDELFAKNEPYMRAALNGERQRFERTLTKADGSIGYTWAHYIPDIANGQV 553

Query: 403 IVTSNPRGGTIWMFENLTV----QVDLETKYNTLV---KVQGETIDHLSEGV 447
                   G   +  ++T     Q+ LE +        + + E + ++S  +
Sbjct: 554 R-------GFFVLVSDITELKLTQLQLEQRTKEAEAANRAKSEFLANMSHEI 598


>gi|117926226|ref|YP_866843.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609982|gb|ABK45437.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1303

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 201/505 (39%), Gaps = 25/505 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                QL      +    + ++I D    + + N  F  +     + L  N  N  +L  
Sbjct: 296 EAAIKQLAFQKFAMDQHAI-VSIADATGNITYVNEKFCLVSGYAESELLGN--NHRVLSS 352

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
                   +++     + N++     +   +  +       +  + +       I +  +
Sbjct: 353 GHHGATFFQEMWHTIEQGNVWHGELKNRAKEGGFFWVASTIVPFLDSQGKPYQYISIRTD 412

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--- 475
           +T +  +E ++           D + EG+     +G     N     +       +    
Sbjct: 413 ITQRKRVEEQHEKQKIFLQGITDAMGEGLFAVDREGACIFINKQAERMLGWSAEEIHLKK 472

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               I         Y   +      AA   S D+   +  G +  +S        +PL  
Sbjct: 473 MQGLIHASTRIADAYQWPALRSMDEAAPARSEDEHFINRSGQMFPVS-----MVAVPLEE 527

Query: 536 AQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +    +++ F +++   + E+ L     A  +A+  K+ F+ ++S+E+R+P+  I+G +
Sbjct: 528 GERIVGSVVVFQDISVRKQQEQVLQGAVRAADQANRAKSDFLANMSHEIRTPMNAILGMS 587

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L   +   S + +Q  Y++ I  ++  LL+++NDILD A V+AG M++      L+++L
Sbjct: 588 HLAIRT---SNDPRQRAYLQKIHGAAQSLLHIINDILDFAKVEAGKMEMEMVPFNLDEVL 644

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI- 709
           + +    + K  E  + +       L    V D  RL QI   +  NA+ F+ +GS V+ 
Sbjct: 645 DTLATLTSVKADEKGLALIFRRHLDLPQRVVGDALRLNQILLNLTGNAVKFTEQGSVVVN 704

Query: 710 LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
           ++  +  GD     FSV++ G  + E   + +F  F         +  G GLGL+I +  
Sbjct: 705 VEKVQQQGDQIVLRFSVQDTGIGMDESQIQQLFVAFEQADSSITRRYGGRGLGLAICKQL 764

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +NL  G +S+ S+ E  +     +P
Sbjct: 765 VNLMAGELSVQSTPEVGSCFTFTVP 789



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/298 (11%), Positives = 91/298 (30%), Gaps = 44/298 (14%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           FLR    +G+  E A   L  +K +        +           D  G+I + N  +  
Sbjct: 285 FLRQRR-NGLSLEAAIKQLAFQKFAMDQHAIVSIA----------DATGNITYVNEKF-- 331

Query: 225 NTETEGIVFQKAIGESRKLFKE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
                G    + +G + ++           + M  +      +   +          + +
Sbjct: 332 -CLVSGYAESELLGNNHRVLSSGHHGATFFQEMWHTIEQGNVWHGELKNRAK-EGGFFWV 389

Query: 280 VRVLNSFGE--------AGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRY 327
              +  F +          I  D+++   V +Q       L      +   +   D+   
Sbjct: 390 ASTIVPFLDSQGKPYQYISIRTDITQRKRVEEQHEKQKIFLQGITDAMGEGLFAVDREGA 449

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
             F N+    +       +       ++   + ++ ++ +   W   +         + +
Sbjct: 450 CIFINKQAERMLGWSAEEIHLK----KMQGLIHASTRIADAYQWPALRS--MDEAAPARS 503

Query: 388 HKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNTLVKVQGET 439
             + +   +GQ   V + + P        G++ +F++++V+   E      V+   + 
Sbjct: 504 EDEHFINRSGQMFPVSMVAVPLEEGERIVGSVVVFQDISVRKQQEQVLQGAVRAADQA 561


>gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
           12472]
 gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium
           violaceum ATCC 12472]
          Length = 1229

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 127/674 (18%), Positives = 247/674 (36%), Gaps = 76/674 (11%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           LA    K ++ +   +    + +S    +      G I   N   +              
Sbjct: 66  LAVYRRKYRQANARQAELAAIVESSHDAIIGCAADGRIDSWNRGAENMLGYPAQETLGKP 125

Query: 238 GESRKLFKEEIKKRMISSS-ALEKNFCETVSTLEHGNNKSYKIVRVLNS-------FGEA 289
            E+     E   +     S   E+   E +  L   + +       ++         G A
Sbjct: 126 LENFVKLPEPDDRAPPLLSVQREQTPLELICFLHDRDGRRLDAAVTMSPVKTSDKQGGVA 185

Query: 290 GIAIDVSKEITVNDQLTHTYE----------------------ILHNLTVAIAIFDQNRY 327
            I  D+++ +     +                           IL N   AI   D++  
Sbjct: 186 LIIRDITELVANERDIRKLNASLEQQVEQRTAEIRVFSALQNAILANAGYAIIATDRSGV 245

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDEL---LEFLRSANKLPEQLNWKTWK--ENIFSVY 382
           +   N +   +     A +    S        E    A ++ E+L  +     + I S  
Sbjct: 246 ITLFNPAAERMLGHAAADVIGRVSLTRFHDPRELAERARQIGERLGQQIESGFDAIVSPS 305

Query: 383 KSSETHKDTWH--LPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           + + + +  W     NG TL V++T +      G +  +  +   +    +    +++  
Sbjct: 306 RQARSDESQWTYIRRNGSTLPVLLTISALENDDGHVTSYLVIAADITQREQDRHQLELAR 365

Query: 438 ETIDHLSE----GVAVFGPDGRIKLSNPAFRSLW---------KTEENRLSPGTHIRNIA 484
           + +   +E    G+  +  D  +   N     ++             N      H  +I 
Sbjct: 366 DQLVKAAEVAELGIWSWTLDSDVLEWNDRMFEIYDLPRSFRDFGLYYNHWRGRVHPDDIE 425

Query: 485 ATCSRYYNESDGWDLFAA--IITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTML 540
               +     +G D F A   I   D E + LQ    +E  +D             +   
Sbjct: 426 RIEHQLQRALEGADAFNADFRILRQDGEARHLQVAARIEYGADG---------KAVRVTG 476

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +VT     E  L++   A   A+  K+ F+ ++S+E+R+P+  I+G   L++ +   
Sbjct: 477 INRDVTLEREREAWLSQAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQT--- 533

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN++Q+ Y +  S+++  LL ++NDILD + V+ G + L      ++ LL +V   ++ 
Sbjct: 534 GLNARQADYADKASSAARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSA 593

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNG 717
            + + ++ +    D +L  ++ AD  RL QI   +  NA+ F+ +G  VI    A RD  
Sbjct: 594 NVGDKDVEVLFDIDPELPDWISADSLRLQQILINLSGNAIKFTERGEVVIAARLARRDEA 653

Query: 718 DFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                FSV++ G  I  +  + +F  F        RR  G GLGL+I +  + L GG ++
Sbjct: 654 GLRIAFSVRDTGIGIAPEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLT 713

Query: 774 ISSSDEGVTTINCR 787
           + S +   +     
Sbjct: 714 VESEEGKGSVFRFE 727


>gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1248

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 109/524 (20%), Positives = 203/524 (38%), Gaps = 45/524 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           AI V     + +  +    +  N  + I     +  +   N  FVE             +
Sbjct: 311 AIMVRMLNELRESDSRHRIMFENSPLGIVYLKDDGTIINCNDKFVE---------QMGST 361

Query: 352 NDELLEFLRSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
            D+++ F ++    +  Q   K       SV++   T            LH+I      G
Sbjct: 362 KDKIIGFNQAKQSGINLQEKVKNALAGDLSVFEDVYTSITG---AKTSFLHIIFNPINPG 418

Query: 411 G----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 I   E++T + + E       + +   +D +   V     +    + N A  S 
Sbjct: 419 KNPTEVIATIEDITDRKESEQALAREAEDRRILLDTIPTQVWYQPDEYSYGVVNKAHASF 478

Query: 467 WKTEENRLSPGT----HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              +E++L+       +  ++ + C +  +E         I+T       S +  L L++
Sbjct: 479 VGIQEDQLAFKKLSEVYPPDVVSVCIQSSSEVFRNG--KTIVTEEWVPNASGEARLLLIT 536

Query: 523 -------DSVLEYSIIPLPN--AQTMLTFVNVTDSVRAE---RALTEKNEALRKADEIKN 570
                  +  +EY +    +   Q          + R E   + L        +A + K 
Sbjct: 537 KSPKKRENGTVEYIVFAAEDITEQRRSVDSLADYANRMELTNKQLNIALARADEAAKAKG 596

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  +IG   LL  +   SL  +Q ++ E I +S  +LL LVNDILD 
Sbjct: 597 DFLANMSHEIRTPMNGVIGMAGLLLDT---SLTDEQQRFAETIRSSGELLLLLVNDILDF 653

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + ++AG ++L      L  +L++V  S+A   H   + +   +D  +      D  RL Q
Sbjct: 654 SKIEAGKLELEIVDFDLVQILDDVMDSMAVGSHSKGLELLCATDPSVPYQLQGDPARLRQ 713

Query: 690 IFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           I S ++ NA+ F+ +G   V +    +        FSV + G  I  D    +F +F   
Sbjct: 714 ILSNLVGNAIKFTVQGQVSVRVSIVNEKESDCILKFSVSDTGIGIQSDKQVLIFEQFNQV 773

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                R   G GLGL+I +  + + GG + + S+     +    
Sbjct: 774 DASTTRKFGGTGLGLAISKRLVEMMGGTIGVESNLGEGASFWFT 817


>gi|144899595|emb|CAM76459.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 565

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 127/531 (23%), Positives = 227/531 (42%), Gaps = 50/531 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTV--AIAIFDQNRYLQFHNRSFVELWEIDLAFLA------- 347
           +     D L  T   L       A+A+   N  L   N    EL+ +    LA       
Sbjct: 39  EANASRDALMATTRALRESEERYALAMRGPNEGLWDWNPITKELY-LSARLLAILGFSGE 97

Query: 348 -TNPSNDELLEFLRSANKLPEQL----NWKTWKENIFSVYK-SSETHKDTWHLPNGQTLH 401
               ++ + L+ +   +++P Q     + K   ++    Y+      +  W L  G  L 
Sbjct: 98  TVRTTSHDWLKMVHPDDRVPYQSTLVQHLKGQTDHFECEYRVRGRNGEYRWILSRG--LA 155

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           V   +      +    ++T +   E             ++  +  + V G DGR++  N 
Sbjct: 156 VRDENGVATRMVGSIGDVTDRKRREAVLRASEARFRSLVEAAASIIVVVGADGRVREFNR 215

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLE 519
               ++       + G     I  + +R   + D +D +       D+ RK  Q      
Sbjct: 216 EAERMFGLSAAA-AIGRAWSTILDS-NRVGQDGDRFDQW------LDEVRKGWQVRDRET 267

Query: 520 LLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRAERALTEKNEALR--------------- 563
           +L   ++ +++ PL  +   ++   ++T   RAE AL + N+ L                
Sbjct: 268 VLGQHIISWNLAPLSDDDGIVIVGQDITQRRRAETALRQANDLLEYRVAARTAEAEAACR 327

Query: 564 ---KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTI 619
              +A+  K+ F+ ++S+ELR+PL  IIGF+D ++   +G   N   ++YV+ I  S T 
Sbjct: 328 QAEEANRGKSEFLANMSHELRTPLNAIIGFSDAMRLGVMGPVENPLYAEYVQAIWESGTH 387

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+++ND+LDL+ V+AG   L    + L  L  +V + +A K   + + +++  DG  G 
Sbjct: 388 LLSIINDVLDLSKVEAGHFDLAPERLPLTPLAEQVIRLMAEKAMRHRLELRLQVDGDPGH 447

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  RL Q+   +L+NA+ F+  G  VIL   RD+G     V ++G  +  +    V 
Sbjct: 448 ALVDPLRLKQVLFNLLANAVKFTPAGGHVILSLGRDDGGSWIKVADSGIGMRPEDIDRVL 507

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             FV       RR  G GLGL + + FI LHGG ++++S     T +  R+
Sbjct: 508 EPFVQIDSHLSRRNMGTGLGLPLAKRFIELHGGTLALASQPGQGTVVTIRL 558



 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 88/292 (30%), Gaps = 22/292 (7%)

Query: 43  LLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQR 102
           +L R R+ +++         +     ++   +L        +   G +E       + + 
Sbjct: 22  VLSRLRSRISELELAQKEANASRDALMATTRALRESEERYALAMRGPNEGLWDWNPITKE 81

Query: 103 IDIPQTDTDLLSF---------ENWLKFHHYIKL----SKATEKLRKEGQSFDL--VAET 147
           + +      +L F          +WLK  H        S   + L+ +   F+       
Sbjct: 82  LYLSARLLAILGFSGETVRTTSHDWLKMVHPDDRVPYQSTLVQHLKGQTDHFECEYRVRG 141

Query: 148 QND--CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL 205
           +N     I   G        +    + G   ++ +   +   L    + F+ L ++   +
Sbjct: 142 RNGEYRWILSRGLAVRDENGV-ATRMVGSIGDVTDRKRREAVLRASEARFRSLVEAAASI 200

Query: 206 VWHRDQAGDILWANISYKKN----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
           +      G +   N   ++                I +S ++ ++  +         +  
Sbjct: 201 IVVVGADGRVREFNREAERMFGLSAAAAIGRAWSTILDSNRVGQDGDRFDQWLDEVRKGW 260

Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
                 T+   +  S+ +  + +  G   +  D+++       L    ++L 
Sbjct: 261 QVRDRETVLGQHIISWNLAPLSDDDGIVIVGQDITQRRRAETALRQANDLLE 312


>gi|325107359|ref|YP_004268427.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967627|gb|ADY58405.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 642

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 115/641 (17%), Positives = 242/641 (37%), Gaps = 51/641 (7%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVF 233
           ++     +  +N    F++L +S+  LVW     G + + N  + +       E+ G  +
Sbjct: 7   SQLRSLSRSAANPAEPFRLLAESIPQLVWTALPDGRLDYTNRRWIEYTGMTAEESRGWSW 66

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFG 287
           ++A+    +L  + + +   +   L     ET      G+++ + +              
Sbjct: 67  KEALHPDDRL--QCLDQWTTAVDQLVPMKMETRMLSADGSSRWFLVQAEPIFDQEQRPIC 124

Query: 288 EAGIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
             G   D+ ++ T           ++      I     +    F N+   E+    L  L
Sbjct: 125 WFGTCTDIHEQRTKQRLIEQRCQRLVEAAHDGIWEIGLDGRTLFANKRMAEMLGCSLDDL 184

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVT 405
                 D + E            +  T +E+        SET +  W   +G+    +  
Sbjct: 185 LERNVYDFIFE-----------DDLDTAREHSLRRRSGISETFEWRWRRADGREQWTLAA 233

Query: 406 SNPRG-------GTIWMFENLTVQVD--LETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           S+P         G++ +F + T   +  +        ++  + +D +   V      GR 
Sbjct: 234 SSPLVDASGHITGSVGVFTDSTAHRNKNVSAADAARRRLLEDVVDSVEAPVYAKDLQGRY 293

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
             SN     +    +N +      +   +  +   + +D   + A    SF +   +   
Sbjct: 294 IFSNRHHTKIRGGVQNEVLGARPDQFFGSELADALSANDRRVVEAGHSMSFRELVPADGQ 353

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVN-----VTDSVRAERALTEKNEALRKADEIKNS 571
             E +S         PL +A   +  V        ++ R    +      L  A++ K+ 
Sbjct: 354 VREFVSLK------TPLRDADGQIHGVFGISTPQPETTRVNEQILTTLSDLSLANQRKDE 407

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +++ELR+PL  I    +LL+            + +E +   S  L+ LV+D+LD++
Sbjct: 408 FLAMLAHELRNPLAPIRTGIELLR--IAADDPEVLQETIEVMDQQSRQLVTLVDDLLDVS 465

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +  G + L +  I L D++++   +    + + N    V           D +RL+Q+ 
Sbjct: 466 RIARGKIDLRHDLINLADVIDQAVTASRPLLDDANHEFHVELPDCPLQVQGDSRRLVQVV 525

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
           S +L+NA  ++ +G  V L    +      ++++ G  IPE M + +F  F     R   
Sbjct: 526 SNLLNNAAKYTPRGGRVDLIVQPEPNRIGIAIRDTGIGIPEHMRERIFELFTQVDERQHD 585

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           +  G+G+GL++V + ++LH G + + S      +T    +P
Sbjct: 586 RYSGLGIGLTLVRTLVHLHNGEIQVHSDGQGQGSTFTVLLP 626


>gi|327539788|gb|EGF26391.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1739

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 119/773 (15%), Positives = 271/773 (35%), Gaps = 71/773 (9%)

Query: 60   SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWL 119
            + ++++ +    + SL+  +    IVW    +          R    QT    +    WL
Sbjct: 836  TDVTQLRESEELFQSLVRASAQ--IVWIANADGVVESDSPSWREYTGQTLEQWVGLG-WL 892

Query: 120  KFHHY--IKLSKAT-EKLRKEGQSFDLVAETQND----CAIKI----EGRVSGSCAFLRI 168
               H    +L++        + +   L    +N        ++    + R  G+     +
Sbjct: 893  DVIHPDDRELTQKVWTDAVAKDRPLVLEYRLRNRHGEYRWFQVRTAPQRRPDGT-----V 947

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI-----SYK 223
                G+  ++ +      +L++  +  + + ++   LV   D+ G +L  +      +  
Sbjct: 948  NRWVGMNIDIHDQKQSRLELADREAHLRRVINNQLGLVGVIDRNGLLLEVDDRSLEYARV 1007

Query: 224  KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS---YKIV 280
               E  G  F +A   +      +  +  +  +   +     VS   HG++     + I 
Sbjct: 1008 NRHEVIGKPFHEAPWWNYDPDVAQQMRDAMERAFKGEPVRYDVSLFAHGDDGVLIDFMIA 1067

Query: 281  RVLNSFGEAGIAI----DVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
             V +  G     I    D+      E+   +       I +     I   D+   +   N
Sbjct: 1068 PVFDDDGNIEYLIPSGVDIRDRKKAELKQQEVAVRLEAIFNTAVDGIITIDRRGTINSVN 1127

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
             +  +++   +  L  +  N  + E   S     E   +    E     +      + T 
Sbjct: 1128 VAAAKIFGYGVDELTGSNINVLIPEPEHS-----EHDGYLKAYEETGQSHIIGHQRQVTG 1182

Query: 393  HLPNGQT----LHVIVTSNPRGGT-IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
               +G T    L V  TS       + +  +++ +V  E       +     +       
Sbjct: 1183 RRKDGSTFSLDLSVSETSLSGEHRYVGIVRDVSDRVRSEQAKKNASRRMQMALRAGGMAA 1242

Query: 448  AVFGPDGRIKLSNPAFRSLWKTEE---------NRLSPGTHIRNIAATCSRYYNESDGWD 498
              + P  +          L+   +           L+    + ++          +  ++
Sbjct: 1243 WEWTP--KKSYWTKEMYELFGVTDDRKGSPELCFSLTHPDDVESLKRHWQEAIEGNHDYE 1300

Query: 499  LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                I+   D E + + G  E++       +       +      + T        L E 
Sbjct: 1301 YEFRIVRP-DGEMRWITGMGEVVRGKSGNVT-------RMYGVNWDSTQEHVQAETLRES 1352

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                 +A   K++F+ ++S+E+R+P+T I+G+ +LL+       +++   +++ I  +  
Sbjct: 1353 ERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQDIIQ---DTEGLHHLQTIRRNGD 1409

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL+++NDILDL+ ++AG + +         L+ +V+  +  +  E  + + V    ++ 
Sbjct: 1410 YLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKEAGLELTVEYGQQIP 1469

Query: 679  -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             S  +D +RL Q+   ++ NA+ F+ +G+  ++++   D       V + G  I  +  +
Sbjct: 1470 ASIQSDAKRLKQVLINLVGNAIKFTPEGNVRLVVRMDSDPIRLCIDVIDTGIGITLEQQE 1529

Query: 737  SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +F  F            G GLGL+I      + GG +   S     +T    
Sbjct: 1530 QLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVGVGSTFTLS 1582



 Score = 76.5 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 146/437 (33%), Gaps = 40/437 (9%)

Query: 162  SCAFLR----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
              AF+R      S  G +  +  T     +L     +F+ L  +   +VW  +  G +  
Sbjct: 811  GKAFIRRVLPYRSYSGDHDGIVLTFTDVTQLRESEELFQSLVRASAQIVWIANADGVVES 870

Query: 218  ANISYKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
             + S+++ T        G+ +   I    +   +++    ++            +   HG
Sbjct: 871  DSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDRPLVLEYRLRNR--HG 928

Query: 273  NNKSYKIVRVLN--SFG----EAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIF 322
              + +++         G      G+ ID+  +     +L     H   +++N    + + 
Sbjct: 929  EYRWFQVRTAPQRRPDGTVNRWVGMNIDIHDQKQSRLELADREAHLRRVINNQLGLVGVI 988

Query: 323  DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            D+N  L   +   +E   ++   +   P ++         N  P+       ++ +   +
Sbjct: 989  DRNGLLLEVDDRSLEYARVNRHEVIGKPFHEAPW-----WNYDPDVAQQM--RDAMERAF 1041

Query: 383  KSSETHKDTW---HLPNGQTLHVIVTS--NPRGGTIWMF---ENLTVQVDLETKYNTLVK 434
            K      D     H  +G  +  ++    +  G   ++     ++  +   E K   +  
Sbjct: 1042 KGEPVRYDVSLFAHGDDGVLIDFMIAPVFDDDGNIEYLIPSGVDIRDRKKAELKQQEVAV 1101

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                  +   +G+      G I   N A   ++    + L+ G++I  +        ++ 
Sbjct: 1102 RLEAIFNTAVDGIITIDRRGTINSVNVAAAKIFGYGVDELT-GSNINVLIPEPEHSEHDG 1160

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRA 551
                      +     ++ + G  +  S   L+ S+         + +    +V+D VR+
Sbjct: 1161 YLKAYEETGQSHIIGHQRQVTGRRKDGSTFSLDLSVSETSLSGEHRYVGIVRDVSDRVRS 1220

Query: 552  ERALTEKNEALRKADEI 568
            E+A    +  ++ A   
Sbjct: 1221 EQAKKNASRRMQMALRA 1237


>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1353

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 146/355 (41%), Gaps = 14/355 (3%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +++    +AV   D    +SN   +         L     I+++ A  + Y    +G   
Sbjct: 700  VENNPHALAVLSGD-TAVVSNDVTQDPLLANAMHLCHQFQIQSMLAIRTSYKGVPNGIIG 758

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                    D +R+     +ELL     +  I                   +  + L +  
Sbjct: 759  LHQ----CDRQRQWTPEEIELLEAVAAQVGIAIAQAELLRHEQQQRQLLAQQNQELEQAR 814

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                 A+  K+ F+  +S+E+R+P+  ++GFT+LL  +    LN +Q  +++ +  +   
Sbjct: 815  LQAELANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDT---PLNEQQRDFLQTLHQAGEA 871

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LL ++NDILD + +++G + L      + + + +V   +A+K  E  + +      +  +
Sbjct: 872  LLTIINDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTPETPA 931

Query: 680  -FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSIPEDMC 735
                D  RL QI   ++ N + F+ +G   V +   +  G     F V++ G  IP D  
Sbjct: 932  QIKGDVTRLRQILVNLVGNGIKFTHEGQVAVHVGVLKREGKDFLQFQVQDTGIGIPRDRL 991

Query: 736  KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +F  F        R   G GLGL I +    L GG +S+ S++   TT    I
Sbjct: 992  DRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVESTEGQGTTFTFTI 1046



 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 92/292 (31%), Gaps = 46/292 (15%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQK 235
           T  +   +    S+ + +F+S +  +      G I   N + ++      +E  G    +
Sbjct: 167 TQQQLAYIQQMSSLQEAVFNSSNHAIIATRTDGIITLMNRAAQQWLGYPASELVGKATPE 226

Query: 236 AIGESRKL----------FKEEIKK--RMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
              + +++            E I      + + A      E   T    +   + +   +
Sbjct: 227 RFHDPQEMERYAQILSAQLGEPIPAGFETLVARARRGLADEQEWTFVRRDGSCFPVSLSV 286

Query: 284 NS--------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD---QNRYLQFHN 332
                      G    A+D++ +  +   L      +   T  I I D    +  + + N
Sbjct: 287 TPMHDRQGQLIGFLESAVDITDKKQIEAALRLRERAIIASTNGIVITDYRQPDNPVIYVN 346

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            +F  +       +           FL+ +++       +     I +  K  ++ +   
Sbjct: 347 PAFERMTGYRATEVIGKNC-----RFLQGSDR------HQPGATAIRNAIKKGQSCRVVL 395

Query: 393 --HLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             +  NGQ     +  +P     G I  +  + +Q D+  +    + +Q + 
Sbjct: 396 RNYRKNGQLFWNELAISPIYNEFGEITHY--IGIQSDVTERQRAQLFLQQQV 445


>gi|298530364|ref|ZP_07017766.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509738|gb|EFI33642.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 919

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 115/691 (16%), Positives = 252/691 (36%), Gaps = 54/691 (7%)

Query: 140 SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD----GIYSELAETTLKCKKLSNHISVF 195
           +F  V    ++     E + +   A  R    +     + S + +     K L  + +  
Sbjct: 158 AFCAVVTDLSEHKRLQEIKAAEQTARARAQEAERYSETLESLVRDLNKARKGLKENQNFL 217

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK---AIGESRKLFKEEIKKRM 252
           + + D++   +   D+  +I+  N   +     +    +K   A    R+        R 
Sbjct: 218 ESVLDTIQDGIVVLDKDMNIIKTNRVIQNLYSLDHSRQEKCYTAFHGRREPCDLCPTSRA 277

Query: 253 ISSSALEKNFCETVSTLEHG-NNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQL 305
           + +  LE    E +  +++G    + ++             G    A D+SK       L
Sbjct: 278 MQTGNLE---VEEIPIIQNGVETGTMEVFAYPMRDEQGNITGVVEYARDISKVKRNRQAL 334

Query: 306 THTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLR 360
             +  +L        +     D ++ +   +     ++     +F    P     L+ + 
Sbjct: 335 KRSQALLSRTQEIADIGSWEMDLDKDVLTWSDQVYRMFGYAPQSF---QPGYQSFLDAVH 391

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTIWM- 415
             ++   +   K + E++  V +  E         + Q +  +           G + + 
Sbjct: 392 PEDR---ESVHKKYLESMLDVSQGFEFEHRIV-RADSQEVRYVREQGLHELDDAGRVVLS 447

Query: 416 ---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
               +++        K     +     +D   E + +   +GR    N A  S       
Sbjct: 448 YGAIQDIAENKLAADKLREREEKYRALVDQSVEMIYLHDMEGRFIEVNAAAVSNTGYTRE 507

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L             S+   ++    +      + + E     G++  +   + +  I  
Sbjct: 508 ELLSMNVFDLHTDQLSQEEVKNYWQSMLPGQSMTVETEHHKKDGSVIPVEVKIGK--IYY 565

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 M    ++T+  +  + L     +  +A+  K+ F+ ++S+E+R+P+  ++GF  
Sbjct: 566 SNQEHIMALVQDITERKQVHQELI-ARRSAEEANRAKSRFLANMSHEIRTPMNAVLGFAR 624

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+     +L +KQ+     I  S   LL L+N ILD++ ++AG   L+     L  L++
Sbjct: 625 MLENDP--ALPAKQAAQAGTIVRSGDHLLQLLNSILDMSRIEAGQSGLHPEDFHLPGLID 682

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           ++         +  + + +  D  L     AD+ +LLQI + +LSNA+ F+S G   + +
Sbjct: 683 KLMTMFELSAQDKGLELVLEKDPHLPPDLHADQGKLLQILTNLLSNAIKFTSTGEVKLTI 742

Query: 711 K----------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
                          +   +F V+++G  I       +F  F    ++    G GLGL+I
Sbjct: 743 SSKPPGPADTACEEQDLGLVFQVQDSGPGITAQDQAQLFEPFFQTQNKMHPGGTGLGLTI 802

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +  L GG++++SS +   +     IP K
Sbjct: 803 SREYAVLMGGNLTVSSQEGRGSCFRLEIPVK 833



 Score = 41.1 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 58/489 (11%), Positives = 137/489 (28%), Gaps = 85/489 (17%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN---------------------- 225
           L      F+VL + +          G +L+AN  + +                       
Sbjct: 53  LKGADHPFRVLMEDMSEGALTLSSDGIVLYANQRFAEMLKSHLNLVAGSDLVQWIQSGHR 112

Query: 226 ----------TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN- 274
                     +          +     L   +     + +  ++  FC  V+ L      
Sbjct: 113 CRFYSLLQGQSGQRSSGEINLVDSQGALVPTQFSLTPLETQDIQGAFCAVVTDLSEHKRL 172

Query: 275 ----------KSYKIVRVLNSFGEAGIAIDVS-KEITVNDQLTHTYEILHNLTVAIAIFD 323
                     ++        S     +  D++     + +       +L  +   I + D
Sbjct: 173 QEIKAAEQTARARAQEAERYSETLESLVRDLNKARKGLKENQNFLESVLDTIQDGIVVLD 232

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
           ++  +   NR    L+ +D +                  +  P     +T    +     
Sbjct: 233 KDMNIIKTNRVIQNLYSLDHS--RQEKCYTAFHGRREPCDLCPTSRAMQTGNLEV----- 285

Query: 384 SSETHKDTWHLPNGQ---TLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVKV 435
                ++   + NG    T+ V             G +    +++              +
Sbjct: 286 -----EEIPIIQNGVETGTMEVFAYPMRDEQGNITGVVEYARDISKVKRNRQALKRSQAL 340

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-------HIRNIAATCS 488
              T +    G      D  +   +     ++        PG        H  +  +   
Sbjct: 341 LSRTQEIADIGSWEMDLDKDVLTWSDQVYRMFGYAPQSFQPGYQSFLDAVHPEDRESVHK 400

Query: 489 RY----YNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPN-AQTMLT 541
           +Y     + S G++    I+ +   E + +  QG  EL     +  S   + + A+  L 
Sbjct: 401 KYLESMLDVSQGFEFEHRIVRADSQEVRYVREQGLHELDDAGRVVLSYGAIQDIAENKLA 460

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT--DLLKTSKL 599
              + +     RAL +++  +    +++  F+     E+ +   +  G+T  +LL  +  
Sbjct: 461 ADKLREREEKYRALVDQSVEMIYLHDMEGRFI-----EVNAAAVSNTGYTREELLSMNVF 515

Query: 600 GSLNSKQSQ 608
                + SQ
Sbjct: 516 DLHTDQLSQ 524


>gi|327479684|gb|AEA82994.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1239

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 106/501 (21%), Positives = 207/501 (41%), Gaps = 29/501 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + ++     +++  L VA  + +    ++  N+S  +L       LA            
Sbjct: 350 QLQEREARFRQLIEQLPVATLLCNAGGRIELANQSAGQLLGGPADLLAGE---------- 399

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R +  +P  L      E I    + +   +      +G  + V V+         ++  +
Sbjct: 400 RVSRYVPGVLG-----EQILRQLRDTTQLELQAQREDGTPIPVAVSLTSFRHDDALYYVI 454

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
              +DL+ +     +     ++       +    G I + N     L+      L  G  
Sbjct: 455 -NLLDLQARKRD-DERFRNVVEASPNAFVLVDTQGSIVMVNRQTELLFGYTRQELL-GQP 511

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-- 537
           +  +     R  +                   + L G     S   +E  + PL +    
Sbjct: 512 VELLLPEALRDAHRGLRQGYTEHPEPRRMGSNRELFGLHRDGSALPVEIGLSPLRSGDEQ 571

Query: 538 -TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 ++++    AER L E+ + L  A+  K+ F+ ++S+ELR+PL +I+  +D L+ 
Sbjct: 572 LVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQ 631

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G+LN KQ ++ + I  +   LL L+ND+LDLA +++G M+L    + L DLL +++ 
Sbjct: 632 NGAGNLNDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEA 691

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILK 711
           S+ +   +  + + +  D  +  +  +DR RL QI + +L+NA+ F+ KG       +L 
Sbjct: 692 SLGSMAAQKGLSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKFTEKGQVELMASLLP 751

Query: 712 AARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLH 768
           A +D        V+++G  I +D  + +F  F     +      G GLGL+I    + + 
Sbjct: 752 ADQDGRQMVQLQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVL 811

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG V ++S      T    +P
Sbjct: 812 GGQVMVNSELGQGATFTVLLP 832



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 90/283 (31%), Gaps = 37/283 (13%)

Query: 54  KVNETYSFLS---EICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDT 110
           +     S  +   ++ ++ +++  L+ +    T++ +             Q +  P    
Sbjct: 337 RERALRSSQALSLQLQEREARFRQLIEQLPVATLLCNAGGRIELANQSAGQLLGGP---A 393

Query: 111 DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS 170
           DLL+ E   ++   +   +   +LR   Q  +L A+ ++   I +      + +      
Sbjct: 394 DLLAGERVSRYVPGVLGEQILRQLRDTTQ-LELQAQREDGTPIPV------AVSLTSFRH 446

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            D +Y  +    L+ +K       F+ + ++        D  G I+  N   ++     G
Sbjct: 447 DDALYYVINLLDLQARK--RDDERFRNVVEASPNAFVLVDTQGSIVMVN---RQTELLFG 501

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSF 286
              Q+ +G+  +L   E  +                      N + + + R    +    
Sbjct: 502 YTRQELLGQPVELLLPEALRDAHRGLRQGYTEHPE-PRRMGSNRELFGLHRDGSALPVEI 560

Query: 287 G-----------EAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
           G              + ID+S       +L         L VA
Sbjct: 561 GLSPLRSGDEQLVQAVIIDISHRKAAERRLREQA---DQLAVA 600


>gi|259417433|ref|ZP_05741352.1| histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259346339|gb|EEW58153.1| histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 753

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 92/445 (20%), Positives = 187/445 (42%), Gaps = 22/445 (4%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSNPRGGTIWMFENLT 420
           A KL ++   +   E +  + ++  T  +      G+  L +          I  F N  
Sbjct: 10  AEKLAQERRARLAAERLLELKQAELTDAN---RKLGRHALALTKRIGATQAEIATFRNEN 66

Query: 421 VQVD-----LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +V         K     +    +I    +G A F  + ++  +N A+ ++++  E    
Sbjct: 67  ERVKSDLNTANEKVEQAERRLWHSIQAFQDGFAFFDSNSKLIGANTAYLNIFEGVEEVAP 126

Query: 476 PGTHIRNIAATCSRYY--NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             +++R +           E    D + A++T            + L +D  L+      
Sbjct: 127 GVSYVRILQVLTDEGLIDTEELSADAWRAMMTERWMSPAPEPTVIRLWNDRYLKLIDQRG 186

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +   +   +++T +V  E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +L
Sbjct: 187 HDGDIVSLALDITATVHYEEELRTARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAEL 246

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +   SL  +Q  Y   I  S   LL ++ND+LD + ++A  + L+     L   ++E
Sbjct: 247 LNDT---SLTEEQRLYANTIKNSGEALLVIINDVLDYSKIEAEKLVLHPEPFDLEACMHE 303

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VI 709
           V   +     +  + + V  D  + + F+ D  R+ QI + ++ NA+ F+++G     V 
Sbjct: 304 VVMLLQANARDKGLTLLVDYDLFMPTSFIGDPGRIRQILTNLIGNAVKFTNQGHVTARVT 363

Query: 710 LKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
                ++       S++++G  IPE+  + +F  F  V +    Q  G GLGL+I E  I
Sbjct: 364 GVPHPEDNTVMLHISIEDSGIGIPEEKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLI 423

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            +  G + + S     +    R+P 
Sbjct: 424 KMMDGEIWVESEFGKGSCFGFRLPL 448



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 14/211 (6%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            +   +E + R+ +   LE    E           +  + + + +  +A IA   ++   
Sbjct: 10  AEKLAQERRARLAAERLLELKQAELTDANRKLGRHALALTKRIGA-TQAEIATFRNENER 68

Query: 301 VNDQLTHTYEILHNL-----------TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           V   L    E +                  A FD N  L   N +++ ++E  +  +A  
Sbjct: 69  VKSDLNTANEKVEQAERRLWHSIQAFQDGFAFFDSNSKLIGANTAYLNIFE-GVEEVAPG 127

Query: 350 PSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            S   +L+ L     +  E+L+   W+  +   + S         L N + L +I     
Sbjct: 128 VSYVRILQVLTDEGLIDTEELSADAWRAMMTERWMSPAPEPTVIRLWNDRYLKLIDQRGH 187

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            G  + +  ++T  V  E +  T  +     
Sbjct: 188 DGDIVSLALDITATVHYEEELRTARERAEAA 218


>gi|146281507|ref|YP_001171660.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
 gi|145569712|gb|ABP78818.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
          Length = 1239

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 106/502 (21%), Positives = 206/502 (41%), Gaps = 31/502 (6%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + ++     +++  L VA  + +    ++  N+S  +L       LA            
Sbjct: 350 QLQEREARFRQLIEQLPVATLLCNAGGRIELANQSAGQLLGGPADLLAGE---------- 399

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R +  +P  L      E I    + +   +      +G  + V V+         ++  +
Sbjct: 400 RVSRYVPGVLG-----EQILRQLRDTTQLELQAQREDGTPIPVAVSLTSFRHDDALYYVI 454

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
              +DL+ +     +     ++       +    G I + N     L+      L  G  
Sbjct: 455 -NLLDLQARKRD-DERFRNVVEASPNAFVLVDTQGSIVMVNRQTELLFGYTRQELL-GQP 511

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-- 537
           +  +     R  +                   + L G     S   +E  + PL +    
Sbjct: 512 VELLLPEALRDAHRGLRQGYTEHPEPRRMGSNRELFGLHRDGSALPVEIGLSPLRSGDEQ 571

Query: 538 -TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 ++++    AER L E+ + L  A+  K+ F+ ++S+ELR+PL +I+  +D L+ 
Sbjct: 572 LVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQ 631

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G+LN KQ ++ + I  +   LL L+ND+LDLA +++G M+L    + L DLL +++ 
Sbjct: 632 NGAGNLNDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEA 691

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
           S+ +   +  + + +  D  +  +  +DR RL QI + +L+NA+ F+ KG  V L A+  
Sbjct: 692 SLGSMAAQKGLSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKFTEKG-QVELTASLL 750

Query: 714 ----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINL 767
                        V+++G  I +D  + +F  F     +      G GLGL+I    + +
Sbjct: 751 PADQDGRQMLQLQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEV 810

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG V ++S      T    +P
Sbjct: 811 LGGQVMVNSELGQGATFTVLLP 832



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 90/283 (31%), Gaps = 37/283 (13%)

Query: 54  KVNETYSFLS---EICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDT 110
           +     S  +   ++ ++ +++  L+ +    T++ +             Q +  P    
Sbjct: 337 RERALRSSQALSLQLQEREARFRQLIEQLPVATLLCNAGGRIELANQSAGQLLGGP---A 393

Query: 111 DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS 170
           DLL+ E   ++   +   +   +LR   Q  +L A+ ++   I +      + +      
Sbjct: 394 DLLAGERVSRYVPGVLGEQILRQLRDTTQ-LELQAQREDGTPIPV------AVSLTSFRH 446

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            D +Y  +    L+ +K       F+ + ++        D  G I+  N   ++     G
Sbjct: 447 DDALYYVINLLDLQARK--RDDERFRNVVEASPNAFVLVDTQGSIVMVN---RQTELLFG 501

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSF 286
              Q+ +G+  +L   E  +                      N + + + R    +    
Sbjct: 502 YTRQELLGQPVELLLPEALRDAHRGLRQGYTEHPE-PRRMGSNRELFGLHRDGSALPVEI 560

Query: 287 G-----------EAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
           G              + ID+S       +L         L VA
Sbjct: 561 GLSPLRSGDEQLVQAVIIDISHRKAAERRLREQA---DQLAVA 600


>gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 584

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 91/393 (23%), Positives = 173/393 (44%), Gaps = 27/393 (6%)

Query: 401 HVIVTSNPRGGTIWMFEN-LTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKL 458
            + V S    G +    N ++ +++ + +  +  K Q    ++ + EGV V   D  + L
Sbjct: 212 RIAVQSQDEMGELAHVMNEMSGRIERQLELISSEKNQLDAILNGMGEGVMVTDRDAVVTL 271

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPAF +++ T       G  +  I              DL+AA        R+     +
Sbjct: 272 VNPAFCTMFATGAE--LQGRPLLQITR----------HPDLYAACREVLS-ARQEQHQEI 318

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L     +    +PL +   +   V V   + A +          + ++I+  FV +VS+
Sbjct: 319 ALAGGKTVLVHWVPLRDGDGLQGAVAVFHDISAFK----------RVEKIRRDFVANVSH 368

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+T I G+ + L +  L +   +  +++  I   +  L  LV D+L L+ +++G M
Sbjct: 369 ELRTPVTVIKGYAETLLSGALAADPERAERFLLIIQNHADRLSGLVRDLLTLSELESGEM 428

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            +    + L++ + +    +  +  E  ++++  +     +  ADR RL Q+   +L NA
Sbjct: 429 GMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRLEQVLINLLDNA 488

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + +S  G +V ++ AR+      SV+++G  IPE     +F RF            G GL
Sbjct: 489 IKYSETGKSVGVETAREGDLVRVSVRDSGIGIPEKDLPRLFERFYRVDEARSRDNGGTGL 548

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSIV+  +  HGG + + S     +  +  +P
Sbjct: 549 GLSIVKHIVQAHGGTLEVKSEQGKGSVFSFTLP 581



 Score = 44.5 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 19/138 (13%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +   ++ +      IL+ +   + + D++  +   N +F  ++    A L   P    LL
Sbjct: 238 QLELISSEKNQLDAILNGMGEGVMVTDRDAVVTLVNPAFCTMFA-TGAELQGRP----LL 292

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GT 412
           +  R         +       + S     E H++   L  G+T+ V       G    G 
Sbjct: 293 QITR-------HPDLYAACREVLSA--RQEQHQEI-ALAGGKTVLVHWVPLRDGDGLQGA 342

Query: 413 IWMFENLTVQVDLETKYN 430
           + +F +++    +E    
Sbjct: 343 VAVFHDISAFKRVEKIRR 360


>gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 586

 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 93/393 (23%), Positives = 178/393 (45%), Gaps = 28/393 (7%)

Query: 401 HVIVTSNPR-GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            + V S    G    +  ++  +++ +  + ++        ++ + EGV V      + L
Sbjct: 212 RIAVKSTDELGELAQVMNDMAARIEQQLDRISSERNRLDAILEGMGEGVMVTDEAAVVTL 271

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPAF S++    +    G  +  I              DL+A+       +R+  +  L
Sbjct: 272 VNPAFCSMFGATADV--QGKQLLEITR----------HPDLYASCREVLA-KRQEQRREL 318

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L          +PL     +          R   A+     A++KAD+I+  FV +VS+
Sbjct: 319 NLSGGKATLVHWVPLLEGVKL----------RGVVAVFHDISAMKKADQIRRDFVANVSH 368

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+T I G+ + L +  L     ++ +++  I   +  L +LV D+L L+ +++G +
Sbjct: 369 ELRTPVTVIKGYAETLLSGDLADDPGRRDRFLGIIQNHADRLSDLVRDLLALSELESGEL 428

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            +    +++ D + +    ++ +  E  I +++ S   + +  ADR RL Q+   +L NA
Sbjct: 429 AMQPQKVLIEDAVRQALLLLSPRAEEKGIVMELGSCAPVSAM-ADRGRLDQVLINLLENA 487

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + +S +G  + ++AA +      SV++NG  IPE     +F RF         +R G GL
Sbjct: 488 IKYSGQGGRIQVEAAEEGEMVRVSVRDNGIGIPEKDLPRLFERFYRVDEARSRERGGTGL 547

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSIV+  +  HGG V + S+    +  +  +P
Sbjct: 548 GLSIVKHIVMAHGGSVFVESTVGKGSVFSFTLP 580



 Score = 41.1 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 23/180 (12%)

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSKEITVN-----DQLTHTYEILH 313
           +      S + HG   +   V+  +  GE    + D++  I         +      IL 
Sbjct: 195 RTLAAGASRIGHGEYGARIAVKSTDELGELAQVMNDMAARIEQQLDRISSERNRLDAILE 254

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP---EQLN 370
            +   + + D+   +   N +F  ++              +LLE  R  +      E L 
Sbjct: 255 GMGEGVMVTDEAAVVTLVNPAFCSMFGATADVQGK-----QLLEITRHPDLYASCREVLA 309

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
            +  +    ++     T      L  G  L          G + +F +++     +    
Sbjct: 310 KRQEQRRELNLSGGKATLVHWVPLLEGVKLR---------GVVAVFHDISAMKKADQIRR 360


>gi|71907563|ref|YP_285150.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847184|gb|AAZ46680.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1015

 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 105/537 (19%), Positives = 215/537 (40%), Gaps = 54/537 (10%)

Query: 295 VSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            +K   +N Q    +     IL +    I   D    + F N +  +++  +        
Sbjct: 341 TAKLEQLNRQTDAAWRQSELILSSAAEGICGVDLEGRVIFVNPAARKMFGWNENE-GIGL 399

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           +  +L        K     +   +K       +        +   +G +  V  T +   
Sbjct: 400 NLHDLTHHHDIDGKPFHNEDCPVFKT--LRDGERRHVSDGLYWRKDGSSFPVEFTVSSIE 457

Query: 411 ------GTIWMFENLTVQ----VDLETKYNTLVKVQGE--------------TIDHLSEG 446
                 G + +F ++T +     +LE  +  L ++  +               ++  ++G
Sbjct: 458 RDGKVTGAVNVFRDITERTRIEAELERHHRHLAELVQQRTSELMQTEARASHILESSADG 517

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +     +G I   NPA  ++      ++        + A    ++++ DG    AA   S
Sbjct: 518 LYGIDCNGIITFINPAACAILGYGAEQVI------GLPAHSLFHHSKQDGSPYSAADCPS 571

Query: 507 FD----DERKSLQGTLELLSDS----VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           ++     ++  +   +   +D     V+  +   L N Q      +  D      A   +
Sbjct: 572 YNALRLGQKVRVDDEVYWHADGHAVPVMYATHPMLQNGQITGAVTSFIDVSVQRAAAQAR 631

Query: 559 NEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +AL  A+   +IK+ F+ ++S+E+R+PL  ++GF  +    +    + K       I  
Sbjct: 632 EQALIAAESLAKIKSEFLANMSHEIRTPLNGVLGFAQI--GYRNAENSEKARDSFAKIQL 689

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   LL ++NDILD + ++AG +++  + +VL++++      +  +     I ++V    
Sbjct: 690 SGNRLLGVINDILDFSKIEAGKLRIEQTEVVLSEVVEHALDLLRERARAKQIELQVELAP 749

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            L  + ++D  R+ Q+   ILSNA+ F+  GS V L     +G  +F V + G  +  + 
Sbjct: 750 DLPLTCISDPLRMGQVLLNILSNAVKFTEVGS-VTLSVNCRDGMLLFKVADTGIGMSAEQ 808

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++FN F  V  +   +  G GLGL+I +  + L  G VSI S     T++   +P
Sbjct: 809 IGTLFNPFHQVDASASRKFGGTGLGLAISKRILELMNGKVSIDSLPGVGTSVEFCLP 865



 Score = 46.1 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 62/456 (13%), Positives = 135/456 (29%), Gaps = 87/456 (19%)

Query: 162 SCAFLRI-LSLDGIYSELAETTLKCKKLSNHISVFKV----LFDSLDFLVWHRDQAGDIL 216
             A+ R     + +  + AE T K ++L+            +  S    +   D  G ++
Sbjct: 320 GRAWKRREADREALLRQDAEYTAKLEQLNRQTDAAWRQSELILSSAAEGICGVDLEGRVI 379

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
           + N + +K     G    + IG +     +      I         C    TL  G  + 
Sbjct: 380 FVNPAARKMF---GWNENEGIGLN---LHDLTHHHDIDGKPFHNEDCPVFKTLRDGERRH 433

Query: 277 -----------------YKIVRVLNSF---GEAGIAIDVSKEITVNDQLTHTYE------ 310
                            + +  +       G   +  D+++   +  +L   +       
Sbjct: 434 VSDGLYWRKDGSSFPVEFTVSSIERDGKVTGAVNVFRDITERTRIEAELERHHRHLAELV 493

Query: 311 ----------------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                           IL +    +   D N  + F N +   +       +   P++  
Sbjct: 494 QQRTSELMQTEARASHILESSADGLYGIDCNGIITFINPAACAILGYGAEQVIGLPAH-S 552

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----- 409
           L    +         +  ++  N   + +      + +   +G  + V+  ++P      
Sbjct: 553 LFHHSKQDGSPYSAADCPSY--NALRLGQKVRVDDEVYWHADGHAVPVMYATHPMLQNGQ 610

Query: 410 -GGTIWMFENLTVQVDLET-------KYNTLVKVQGETIDHLSE-------GVAVFGPDG 454
             G +  F +++VQ               +L K++ E + ++S        GV  F   G
Sbjct: 611 ITGAVTSFIDVSVQRAAAQAREQALIAAESLAKIKSEFLANMSHEIRTPLNGVLGFAQIG 670

Query: 455 RIKLSN-----PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
                N      +F  +  +    L     I + +   +          + + ++    D
Sbjct: 671 YRNAENSEKARDSFAKIQLSGNRLLGVINDILDFSKIEAGKLRIEQTEVVLSEVVEHALD 730

Query: 510 ---ER---KSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              ER   K ++  +EL  D  L     PL   Q +
Sbjct: 731 LLRERARAKQIELQVELAPDLPLTCISDPLRMGQVL 766


>gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE
 gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 589

 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q++      N   +     +  +++GV     DG I ++NP
Sbjct: 221 ILTQDEIGELATAFNQMGRQLNFHINALNQEKEQLSNILSSMADGVITINIDGTILVTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +      +            +  +LF   +++  ++ + ++ TL+  
Sbjct: 281 PAERFLQAWYYEQNMNIKEGDNLP--------PEAKELFQNAVST--EKEQMIEMTLQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S  +L   + PL     +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 SWVLL---MSPLYAESHVRGAVAVLRDMTEERRL----------DKLREDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +    + S    + +  + I   S  +  LVND+LDLA +++G   L+
Sbjct: 378 TPISMLQGYSEAIVDD-IASSEEDRKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLH 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y  I +N+ L ++ +  +    E NI +          F+ D  ++ Q+F+ ++ NA+  
Sbjct: 437 YEKINVNEFLEKIIRKFSGVAKEKNIALDHDISLTEEEFMFDEDKMEQVFTNLIDNALRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +S G +V +            +K++GS IPE+    +F RF        R   G GLGL+
Sbjct: 497 TSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV++ +  H G +++ S  +  TT +  IP+K
Sbjct: 557 IVKNIVEAHNGSITVHSRIDKGTTFSFYIPTK 588


>gi|254476816|ref|ZP_05090202.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214031059|gb|EEB71894.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 778

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 187/448 (41%), Gaps = 22/448 (4%)

Query: 354 ELLEFLRSANK--LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
            L + L+   +  L  +   +  +  + +  +    H        G T   +  +     
Sbjct: 2   SLADRLKEERRARLAAERLLELKQAELSAANRKLGRHALALTREIGATKAEVEKTKDENA 61

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +  +L+       K     +   ++I  + +G A F  DG++  +N A+  L+   E
Sbjct: 62  KVKL--DLS---TANEKVERAEQRLWDSIQAIQDGFAFFDSDGKLISANAAYLELFDGLE 116

Query: 472 NRLSPGTHIRNIAATCSRYY---NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                 +++R +            E D  D  A +   +          + +  D  L  
Sbjct: 117 EVEPGVSYVRLLQILTDEGLINTGERDPDDWRAEMTERWLHP-TPEPVVVRMWDDRYLRL 175

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                 +   +   +++T SV+ E  L    E    A+  K++F+ ++S+E+R+P+  ++
Sbjct: 176 VDQRGNSGDMVSMALDITASVQYEEELEAARERAEAANRAKSAFLANMSHEIRTPMNGVV 235

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +LL  +   +L+ +Q  Y   I  S   LL ++ND+LD + ++A  + L+     L 
Sbjct: 236 GMAELLSDT---NLSEEQRLYANTIKNSGEALLVIINDVLDYSKIEAQKLILHPEPFDLE 292

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++EV   +     E  + + +  D  L + FV D  R+ Q+ + ++ NA+ F+++G  
Sbjct: 293 RSVHEVLMLLQPTAREKGLNLILDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTTEGHV 352

Query: 708 ---VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
              +   ++ ++       ++++ G  IP +  + +F  F  V +    +  G GLGL+I
Sbjct: 353 NLQITGISSPEDEFCSIHVAIEDTGIGIPAEKVQHIFGEFNQVDDEQNRKFEGTGLGLAI 412

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  I L GG + + S     +    RI
Sbjct: 413 TKRLIELMGGEIWVESEVGKGSCFGFRI 440



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 2/131 (1%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    V       ++ +  +    A FD +  L   N +++EL++  L  +    S   L
Sbjct: 69  TANEKVERAEQRLWDSIQAIQDGFAFFDSDGKLISANAAYLELFD-GLEEVEPGVSYVRL 127

Query: 356 LEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L+ L     +   + +   W+  +   +           + + + L ++      G  + 
Sbjct: 128 LQILTDEGLINTGERDPDDWRAEMTERWLHPTPEPVVVRMWDDRYLRLVDQRGNSGDMVS 187

Query: 415 MFENLTVQVDL 425
           M  ++T  V  
Sbjct: 188 MALDITASVQY 198



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 57/170 (33%), Gaps = 22/170 (12%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW----- 207
           +    R  G  A      +    +E+ +T  +  K+   +S      +  +  +W     
Sbjct: 28  LSAANRKLGRHALALTREIGATKAEVEKTKDENAKVKLDLSTANEKVERAEQRLWDSIQA 87

Query: 208 ------HRDQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEE----IKKRMISSS 256
                   D  G ++ AN +Y +  +  E +    +     ++  +E      +R     
Sbjct: 88  IQDGFAFFDSDGKLISANAAYLELFDGLEEVEPGVSYVRLLQILTDEGLINTGERDPDDW 147

Query: 257 ALEKNFCETVST-----LEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEIT 300
             E        T     +   +++  ++V    + G+   +A+D++  + 
Sbjct: 148 RAEMTERWLHPTPEPVVVRMWDDRYLRLVDQRGNSGDMVSMALDITASVQ 197


>gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis]
          Length = 967

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 21/305 (6%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSD-------SVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           D    +  +F    K L+   E+L D        V E +   L +   +   ++  +  R
Sbjct: 251 DEIGVLAQTFSIMSKELKNYYEILEDYSHSLAMRVEERTAELLKSNNLLKQEID--ERHR 308

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  L +  EA   A+  K+ F+  +S+E+R+P+  IIG +DLL  +   +L  KQS+YV
Sbjct: 309 IEAELEKAREAAVAANNAKSEFLASMSHEIRTPMNAIIGMSDLLWET---TLTPKQSEYV 365

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +    +   LL ++NDILDL+ V+AG + + +    L + + +  + +A + HE  + + 
Sbjct: 366 KVFRNAGENLLQIINDILDLSKVEAGQITIEHIEFNLREQIEKTCEVMAFRAHEKGLELN 425

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVK 724
                 + + F+ D  RL QI + ++ NA+ F+  G  ++L   R+      G  +F V 
Sbjct: 426 CHLAEDIPTSFIGDPVRLHQILTNLIGNAIKFTRTGE-ILLTGKRNKLPGKKGMLLFLVS 484

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  +PE+    +FN F        R   G GLGL+I +  + L  G + + S+    +
Sbjct: 485 DTGIGLPEEKQSIIFNIFSQVDSSTTRQYGGTGLGLAICKRLVELMDGEIWVESTPGKGS 544

Query: 783 TINCR 787
           T    
Sbjct: 545 TFYFT 549


>gi|296450077|ref|ZP_06891839.1| probable sensor histidine kinase [Clostridium difficile NAP08]
 gi|296878458|ref|ZP_06902464.1| probable sensor histidine kinase [Clostridium difficile NAP07]
 gi|296261085|gb|EFH07918.1| probable sensor histidine kinase [Clostridium difficile NAP08]
 gi|296430542|gb|EFH16383.1| probable sensor histidine kinase [Clostridium difficile NAP07]
          Length = 912

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 249/630 (39%), Gaps = 69/630 (10%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L    S  +   D     +    + G+I +AN S++          Q  + +  K F + 
Sbjct: 297 LIKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFG--DYKEQDKLTDKIKNFNDL 354

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVN 302
           I + +      EKN  + +ST    +NK Y+     ++    + G   +  D +K+    
Sbjct: 355 I-ESINYVFVYEKNVEKLISTS---DNKVYQAIFAPLIIASQTEGVLCVLEDKTKKKEYE 410

Query: 303 DQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +L      + E L ++   I + + N  + + N +  E+++ +L  +            
Sbjct: 411 RKLIEANKRSREFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLESID----------- 458

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTI 413
                               FS+   SE   +  ++ +G+  +V +     T+     TI
Sbjct: 459 --------------------FSLVCKSEESIEKRYVIDGEVKYVEMSFSQYTNAGTDKTI 498

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  + T +   + K           ID L +G+ +   D  I  +N +F  +       
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTNID 558

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSII 531
               ++I+ +        N  +       +    ++ R  L    EL++  + ++E  + 
Sbjct: 559 DIKDSNIKLLMNA-----NTEEKMKFTDNMAKVLNENRSILLLEYELINSYNDIVEVELS 613

Query: 532 PLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            LP    N + ++  +      +      ++     K D+IK  F  ++S+EL++PL  I
Sbjct: 614 ALPFAIYNTRYIMLIIKDLVHKKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVI 673

Query: 588 IGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
                L+    ++ K+   N+    +V+ +  SS  L  L+N+I+DL  +++G   L  +
Sbjct: 674 SSSNQLVDSFYRSEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLA 733

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ ++  +I       +I+I   ++ +  +   D+  + +I   +LSN + F+ 
Sbjct: 734 KYNIVSVIEDLFMNIEEYALRKDIKILFDTELEEINIYIDKVEIERIMLNLLSNCIKFTD 793

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            G  + +         I SVK+ G  IP+D  + +F  F            G G+GL+IV
Sbjct: 794 NGGWIYVSIHYKIDKVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIV 853

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ ++LHGG + + S     T     +P K
Sbjct: 854 KNLVSLHGGDIEVISEVNKGTEFLISLPMK 883



 Score = 38.4 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 19/153 (12%)

Query: 420 TVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T +++ L+            T+D     + VF  DG I  +N +FR+ +   + +     
Sbjct: 287 TEKIEELKGILIKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTD 346

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----P 534
            I+N               DL  +I   F  E K+++  +    + V +    PL     
Sbjct: 347 KIKN-------------FNDLIESINYVFVYE-KNVEKLISTSDNKVYQAIFAPLIIASQ 392

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +    + T     ER L E N+  R+  E
Sbjct: 393 TEGVLCVLEDKTKKKEYERKLIEANKRSREFLE 425


>gi|332704289|ref|ZP_08424377.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554438|gb|EGJ51482.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 614

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 151/359 (42%), Gaps = 19/359 (5%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              +  + +G+ V  P+  I   N    S++      +S    +  I        +E   
Sbjct: 272 EAILQSVDDGIVVVDPEFSIMSINLMAGSIFNVSPEEVSGKHVLEAI-------RDERLS 324

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             +  AI T    E    + TL +          +S++P+      +          A  
Sbjct: 325 KLIKQAIETGRQPELDEQESTLSVSRGEKQVYYSFSVVPVHIGHGPVI---------AAV 375

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L      LR+ D +K+ FV   S+ELR+PLT+I    DLLK      L+ ++ Q +   
Sbjct: 376 LLLRDVTRLRELDRLKSEFVMTASHELRTPLTSIGMSIDLLKDKAGSKLSDRERQLLTVA 435

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 L  LVN++LDL+ ++AG +++++  + L  +  +  + +AT+  +  + +    
Sbjct: 436 QEDVQRLKALVNELLDLSKIEAGKLEIDFERVPLPLICEKTAKIMATQAEQAGVELAFSC 495

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  L     D  ++  +   ++ NA+  + +   V + A +       SV ++G  IP +
Sbjct: 496 DEGLPEVRVDPNKITWVLVNLVGNALRHTPENGHVRVAAKQAGRFAHVSVSDDGEGIPLE 555

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               +F++FV    R    G GLGL+I +  +  HGG + + S+    TT    +P  E
Sbjct: 556 FQTKIFDKFVQVKSRRTSSGTGLGLAICKEIVRAHGGTIWVESTPGKGTTFTFTVPIAE 614


>gi|255656477|ref|ZP_05401886.1| putative sensor histidine kinase [Clostridium difficile QCD-23m63]
          Length = 912

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 249/630 (39%), Gaps = 69/630 (10%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L    S  +   D     +    + G+I +AN S++          Q  + +  K F + 
Sbjct: 297 LIKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFG--DYKEQDKLTDKIKNFNDL 354

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVN 302
           I + +      EKN  + +ST    +NK Y+     ++    + G   +  D +K+    
Sbjct: 355 I-ESINYVFVYEKNVEKLISTS---DNKVYQAIFAPLIIASQTEGVLCVLEDKTKKKEYE 410

Query: 303 DQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +L      + E L ++   I + + N  + + N +  E+++ +L  +            
Sbjct: 411 RKLIEANKRSREFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLESID----------- 458

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTI 413
                               FS+   SE   +  ++ +G+  +V +     T+     TI
Sbjct: 459 --------------------FSLVCKSEESIEKRYVIDGEVKYVEMSFSQYTNAGTDKTI 498

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  + T +   + K           ID L +G+ +   D  I  +N +F  +       
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTNID 558

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSII 531
               ++I+ +        N  +       +    ++ R  L    EL++  + ++E  + 
Sbjct: 559 DIKDSNIKLLMNA-----NTEEKMKFTDNMAKVLNENRSILLLEYELINSYNDIVEVELS 613

Query: 532 PLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            LP    N + ++  +      +      ++     K D+IK  F  ++S+EL++PL  I
Sbjct: 614 ALPFAIYNTRYIMLIIKDLVHKKYSEQAEKELLERFKTDKIKTEFFANMSHELKTPLNVI 673

Query: 588 IGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
                L+    ++ K+   N+    +V+ +  SS  L  L+N+I+DL  +++G   L  +
Sbjct: 674 SSSNQLVDSFYRSEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLA 733

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +  ++ ++  +I       +I+I   ++ +  +   D+  + +I   +LSN + F+ 
Sbjct: 734 KYNIVSVIEDLFMNIEEYALRKDIKILFDTELEEINIYIDKVEIERIMLNLLSNCIKFTD 793

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            G  + +         I SVK+ G  IP+D  + +F  F            G G+GL+IV
Sbjct: 794 NGGWIYVSIHYKIDKVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIV 853

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ ++LHGG + + S     T     +P K
Sbjct: 854 KNLVSLHGGDIEVISEVNKGTEFLISLPMK 883



 Score = 38.4 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 19/153 (12%)

Query: 420 TVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T +++ L+            T+D     + VF  DG I  +N +FR+ +   + +     
Sbjct: 287 TEKIEELKGILIKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTD 346

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----P 534
            I+N               DL  +I   F  E K+++  +    + V +    PL     
Sbjct: 347 KIKN-------------FNDLIESINYVFVYE-KNVEKLISTSDNKVYQAIFAPLIIASQ 392

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +    + T     ER L E N+  R+  E
Sbjct: 393 TEGVLCVLEDKTKKKEYERKLIEANKRSREFLE 425


>gi|186686369|ref|YP_001869565.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186468821|gb|ACC84622.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 878

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 136/713 (19%), Positives = 272/713 (38%), Gaps = 65/713 (9%)

Query: 125 IKLSKATEKLRKEGQSFDLVA-ETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
           + L +   KL    QS  +   E + +C ++ E     +      ++L+    E+A+   
Sbjct: 37  VALEEQLRKLATSAQSSHISVLEYEIECHLEQEKSTGFNVTTDVAMTLEQFQQEIAQRQQ 96

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYK-------KNTETEGIVFQK 235
               L +     ++  D     +W  +     ++W+  +Y+        + +     FQK
Sbjct: 97  LEVILKDSEERLRLALDVSQMGLWDWNILTNQVIWS-ENYELLFGLIPSSFDGPYETFQK 155

Query: 236 AI-GESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKSYKIVRVLNSFGEA 289
            +  E ++   + I + +   +     F      ++V  +       Y       +    
Sbjct: 156 CVYPEDKQSVMQGIGQALAQKTDYNDEFRIIRSDQSVHWISAKGKFIYD--EQGQAVRMI 213

Query: 290 GIAIDVS----KEITVND---QLTHTYEILHNLTVA----IAIFDQNRYLQFHNRSFVEL 338
           G+ ++ +     E +  +   Q+     IL+ +  A    I IF++    Q+ +     +
Sbjct: 214 GVCMETTVCKQAEESTRELTTQVQEQANILNAILTASVDHIYIFNRRGCYQYVSSDAASI 273

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHLPN 396
                  +         L+ L     L EQ++       + +V K+ +  KD   +   +
Sbjct: 274 LGFQPQDIVGK-----TLQDLDLPTDLVEQVD-----NQLKAVIKTGQPIKDECKYVTAD 323

Query: 397 GQTL-HVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           G      I+T+         G I +  ++T     E              +    GVA +
Sbjct: 324 GVHYYEYIITALRNLNQSIEGVIIVSRDITEHKRAEKSLRESEARFRRLFESNLIGVAFW 383

Query: 451 GPDGRIKLSNPAFRSLWKTE--ENRLSPGTHIRNIAATCSRYYNESDGWD--------LF 500
             DG +  +N AF  L      E  L    + +       +Y ++    +        ++
Sbjct: 384 NVDGFVIDANDAFLQLAGYTHEEFTLLGKVNWQEFTPIEYKYLDDRAILEVQTTGVSKIY 443

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
                  + +R  +   + LL+DS        L      L        ++ ER   ++ E
Sbjct: 444 EKEYIHRNGKRVPIVLGIALLNDSQEHGVAFVLDITDRKLAEKECDRLLQCERTARQEAE 503

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                ++IK+ F+  +S+ELR+PL  I+G++ +L+T K     +  ++ +E I  ++ + 
Sbjct: 504 IA---NQIKDEFLAVLSHELRTPLNPILGWSKMLRTRKFDQQTT--NRALETIERNAKLQ 558

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+LD++ +  G + LN   + L  ++    +++       +I+I+ I D  LG  
Sbjct: 559 TQLIEDLLDVSRILQGKLNLNICPVNLVMVVEAALETVRLAAQAKSIQIQTIFDASLGQV 618

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + D  RL Q+   +LSNA+ F+  G  V ++    +      V + G  I  D    VF+
Sbjct: 619 MGDPNRLQQVVWNLLSNAVKFTPTGGRVGIRLMEASNQIQIQVSDTGKGINPDFLPYVFD 678

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
            F        R   G+GLGL+IV   + +HGG V   S  +G   T    +P 
Sbjct: 679 YFRQADGTTTRTFGGLGLGLAIVRKVVEMHGGKVQAESPGDGLGATFTVEVPL 731


>gi|298481294|ref|ZP_06999487.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272498|gb|EFI14066.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 810

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/606 (19%), Positives = 242/606 (39%), Gaps = 49/606 (8%)

Query: 216 LWANISYKKNTE----TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            W N    +       T   + ++A    + L  ++IK  M+     ++     +     
Sbjct: 217 TWWNHQIAERRAIILNTLDDMPEEAAEYRQTLEMQDIKSLMVVPLISKEEVWGYMGIDMV 276

Query: 272 GNNKSYKIVRV-----LNSFGEAGIAIDVSKEITVNDQL------THTYEILHNLTVAIA 320
              +S+  V       L +     I +  S+     D+L           I  NL   + 
Sbjct: 277 RTQRSWSNVDYQCFSSLANIISICIELRKSELQAKEDRLALDNSEKILRNIYKNLPAGVE 336

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAF------LATNPSND-ELLEFLRSANKLPEQLNWKT 373
           ++D++ YL   N   +E++ +          L  NP+   E+ E LR+   +   +N+  
Sbjct: 337 LYDKDGYLVDINDKELEIFGLSDKHEALGVNLFDNPNIPLEVKERLRAKEDVNFSINYDF 396

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            K N +   + +     T      +   +  + N     +++  + T   +  TK     
Sbjct: 397 SKINQYVDSRRNGIINLTT-----KVTALYDSQNRFINYLFINIDTTETTNAYTKIQEFE 451

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            +     D+   G A F       L+   +             GT +  +    +    E
Sbjct: 452 NLFLLIGDYAKVGFAHFN-----VLTRDGYAQDTWYRNLGEKEGTPMPQVIGVYTHVVPE 506

Query: 494 SDG------WDLFAAIITSFDDE----RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                     ++     TS   E    R++ + T   ++  V +Y        + +    
Sbjct: 507 DQAVLKNFVREVKEGKATSLRKEVRVCRENGKYTWTSINVMVRDYRPQD-GIIEMLCINY 565

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E+ L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +      
Sbjct: 566 DITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET---DSR 622

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S++ +Y++ +  ++ +LL L++DILDL+ ++AG     Y+ + +N+   E+ +S++ K+ 
Sbjct: 623 SERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMKV- 681

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +             D+ R  Q+ S  ++NA+ F+ +G   +      +    F V
Sbjct: 682 SKGVELIFEEPLPECYLYTDKNRFTQVISNFINNALKFTQQGCITLGYKQVSHQKIKFYV 741

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++ G  IPE+  KS+F RFV      Q  G GLGLSI +S ++  GG + + S++   + 
Sbjct: 742 RDTGMGIPEEKQKSIFERFVKLNTFVQ--GTGLGLSICKSIVSQMGGEIGVDSTEGVGSC 799

Query: 784 INCRIP 789
                P
Sbjct: 800 FWFTHP 805


>gi|295084122|emb|CBK65645.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 810

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 120/605 (19%), Positives = 243/605 (40%), Gaps = 47/605 (7%)

Query: 216 LWANISYKKNTE----TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            W N    +       T   + ++A    + L  ++IK  M+     ++     +     
Sbjct: 217 TWWNHQIAERRAIILNTLDDMPEEAAEYRQTLEMQDIKSLMVVPLISKEEVWGYMGIDMV 276

Query: 272 GNNKSYKIVRV-----LNSFGEAGIAIDVSKEITVNDQL------THTYEILHNLTVAIA 320
              +S+  V       L +     I +  S+     D+L           I  NL   + 
Sbjct: 277 RTQRSWSNVDYQCFSSLANIISICIELRKSELQAKEDRLALDNSEKILRNIYKNLPAGVE 336

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAF------LATNPSN-DELLEFLRSANKLPEQLNWKT 373
           ++D++ YL   N   +E++ +          L  NP+   E+ E LR+   +   +N+  
Sbjct: 337 LYDKDGYLVDINDKELEIFGLSDKNEALGVNLFDNPNIPSEVKERLRAKEDVNFSINYDF 396

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            K N     +  ++ ++     N +   +  + N     +++  + T   +  TK     
Sbjct: 397 SKIN-----QYVDSRRNGIINLNTKVTALYDSQNRFINYLFINIDTTETTNAYTKIQEFE 451

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            +     D+   G A F       L+   +             G  +  +    +    E
Sbjct: 452 NLFLLIGDYAKVGFAHFN-----VLTRDGYAQDTWYRNLGEKEGIPMPQVIGVYAHVVPE 506

Query: 494 SDGW------DLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNA-QTMLTFVN 544
                     ++     TS   E +  +  G     S +V+     P     + +    +
Sbjct: 507 DQAVLKNFVGEVKTGKATSLRKEVRVCRENGKYTWTSINVVVRDYRPQDGIIEMLCINYD 566

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T     E+ L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +      S
Sbjct: 567 ITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET---DSRS 623

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +Y++ +  ++ +LL L++DILDL+ ++AG     Y+ + +N+  +E+ +S+  K+  
Sbjct: 624 ERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMKV-G 682

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + + +           D+ R  Q+ S  ++NA+ F+ +GS  +      +    F V+
Sbjct: 683 KGVELILEEPFPECYIYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVPHQKIKFYVR 742

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IPE+  KSVF RFV      Q  G GLGLSI +S ++  GG + + S++   +  
Sbjct: 743 DTGMGIPEEKQKSVFERFVKLNTFVQ--GTGLGLSICKSIVSQMGGEIGVDSTEGVGSCF 800

Query: 785 NCRIP 789
               P
Sbjct: 801 WFTHP 805


>gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1300

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 167/382 (43%), Gaps = 20/382 (5%)

Query: 422 QVDLE---TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           + +LE     + +  +     +   S+ +     +G +  +NPA  +L       L  G 
Sbjct: 338 KRELESANEAFASANRRLNLILRSASDSICGVDRNGLVTFANPATSALTGYANEELLGGN 397

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPL--- 533
               I A  +   +          ++ S +  R+ L+ T         ++EY+  P+   
Sbjct: 398 LHELIHARRADGGHFPALECPVTEVLLSGES-RRGLEDTYWTKGGKPFLVEYTASPMLAD 456

Query: 534 -PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +L F  + +  RAE A+     A   A   K+ F+ ++S+E+R+P+  I+G   
Sbjct: 457 GKVEGAVLVFHEIAERKRAEAAMQRARLAAEAASRAKSEFLANMSHEIRTPMNAILGLIH 516

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ ++   L  +Q+ YV+ +  S+  LL ++NDILD + V+AG ++L  +   L+DLL 
Sbjct: 517 LLQQTE---LTGRQADYVQKVRVSAQSLLGILNDILDFSKVEAGKLELERADFRLDDLLQ 573

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-- 709
            +   + +   E +I +       +    V D  RL QI   +  NA+ F+  G  V+  
Sbjct: 574 TLAVIVGSAAQEKDIDVLFSVAPDVPLELVGDPLRLQQILINLAGNAIKFTETGEVVVSV 633

Query: 710 -LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            L+   D+G  + FSV++ G  I  +  + +F  F        RR  G GLGL+I    +
Sbjct: 634 RLRTLADDGAVLDFSVRDTGIGIAPEQRERLFEAFSQGDSSTTRRFGGTGLGLAICARLV 693

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
            L  G + + S     +    R
Sbjct: 694 RLMNGAMDVESEPGKGSVFRFR 715



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 22/168 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S              IL + + +I   D+N  + F N +   L       L     ++ +
Sbjct: 343 SANEAFASANRRLNLILRSASDSICGVDRNGLVTFANPATSALTGYANEELLGGNLHELI 402

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETH---KDTWHLPNGQTLHVIVTSNPR--- 409
                         ++   +  +  V  S E+    +DT+    G+   V  T++P    
Sbjct: 403 HARRADGG------HFPALECPVTEVLLSGESRRGLEDTYWTKGGKPFLVEYTASPMLAD 456

Query: 410 ---GGTIWMFENLTVQVDLETKYNTLV-------KVQGETIDHLSEGV 447
               G + +F  +  +   E              + + E + ++S  +
Sbjct: 457 GKVEGAVLVFHEIAERKRAEAAMQRARLAAEAASRAKSEFLANMSHEI 504


>gi|320354604|ref|YP_004195943.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320123106|gb|ADW18652.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1626

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 99/516 (19%), Positives = 191/516 (37%), Gaps = 43/516 (8%)

Query: 299  ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
              +          L      +  +D +    + + SF  +       L  +  +   L  
Sbjct: 622  ERLRVSEERHAFALEASNDGLWDWDLDTGRVYCSPSFFTMLGYTPGELVPHIQSWHELVH 681

Query: 359  LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRGG-- 411
                   P+   W + +       +     +      +G++L V     +V   P G   
Sbjct: 682  -------PDDRAWVSAEAYRRIAEEGGFELEYRSRTKDGRSLWVLSRGKVVARAPDGRPL 734

Query: 412  -TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
              + +  +LT    +E +  T+ + Q   ++    G+     D  +   N     ++   
Sbjct: 735  RVVGVHTDLTTHKRIELELRTVAEEQQAILNAAPVGICFI-KDRTVVRCNRKLEEIFGHA 793

Query: 471  E---------NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                               + I  T +    E   +     ++   D  R   + T + L
Sbjct: 794  PGAMAGTSTLPWYESEAEYQEIGRTIAHALKEQALFHAERQLVRQ-DGSRFWARMTAQAL 852

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +   L        +   +    ++TD   A  AL    E    A   K+ F+ ++S+E+R
Sbjct: 853  APGDL--------SKGLVGMLEDITDEREASAALHAAKERAEAATRAKSEFLANMSHEIR 904

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +P+  I+GF  L+K      L   Q   +E +SA++  LLN++NDILD++ ++A  M+L 
Sbjct: 905  TPMNAILGFAHLIKR---DPLTPSQLAQLEKLSAATHHLLNIINDILDISKIEANKMELG 961

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                 L  +++ +   +A  +   ++ + V  D        D  RL QI   ++SNA+ F
Sbjct: 962  VEDFDLARIIDRIAALVADSVLAKHLELFVDLDHVPSMLRGDGSRLGQILLNVVSNAIKF 1021

Query: 702  SSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
            + +G    +  ++ A  D     F +++ G  +  +  +  F  F        RR  G G
Sbjct: 1022 TEQGAVDITVRVVDAREDRPVLRFEIRDTGIGMSAEQVERAFLPFEQADSSMTRRFGGTG 1081

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            LGL+I    + L GG + + S     T     IP +
Sbjct: 1082 LGLTISRQLVELMGGRMGVESELGHGTLCWLEIPFE 1117



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 60/220 (27%), Gaps = 25/220 (11%)

Query: 197 VLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
            + +     +       G +L+ N+  ++    +G   +    E         +  ++ +
Sbjct: 16  AMLEQAPCPLLITRMDDGRLLYCNVRARQLFGLDGETCRLVSIEQFYHHP-ADRADLLDT 74

Query: 256 SALEKNFCETVSTLEHGNNKSYK------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
              +    E          +++       +V          +  D+S+       L    
Sbjct: 75  LRHDGFVVEREQEFVDRQGRAFPALVSSTLVEYGTQPALLSVITDISQRRQAEQALQQER 134

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN--------DELLEFLRS 361
             L           +   LQ HN+    L     A     P+          E L+  R 
Sbjct: 135 AQLRA---------RTERLQLHNQLLGRLSTAQTAIDGDLPAFAREVTELLAESLDIARV 185

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           +  +  + +    +     +Y+ +        + +G+   
Sbjct: 186 SVWMFRETDDAAGQLICLDLYEQASRTHTRGQILHGEMFR 225


>gi|158523280|ref|YP_001531150.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158512106|gb|ABW69073.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 565

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 105/424 (24%), Positives = 189/424 (44%), Gaps = 26/424 (6%)

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET----KYNTLVKV 435
           +V + S        L +G  L+  + S P   T++   +L  + + +     ++  L+  
Sbjct: 149 AVLERSVQQAAFVRLADGFGLNATIMSLPDYATLF---DLVARGEADAAVTNRFYGLMHA 205

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS-PGTHIRNIAATCSRYYNES 494
           +   ++  +    VF P      SN  F +      + LS   TH+  + A     Y +S
Sbjct: 206 KRFGLEDTA---IVFNP------SNLFFAAPKGKHADLLSAIDTHLEVLKADSGSVYYQS 256

Query: 495 DGWDLFAAIITSFDDERKS---LQGTLELLS--DSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                   +     D  K    + GT+ ++S   S+L    +     +       + D +
Sbjct: 257 LKKWTSEKVAFVLPDWVKLTGLVAGTVLIMSLGGSLLLKRRVDARTRELRQINNEMDDRI 316

Query: 550 RAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           R+    L +  +  R AD +K++F+  +S+ELR+PL +IIGFT +L     G LN +Q +
Sbjct: 317 RSRTAELADAMKKARAADHLKSAFLATMSHELRTPLNSIIGFTGMLLQELPGPLNEEQKK 376

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  +  S+  LL L+ND+LD++ ++AG + L   T  L   + +    +A    +N I 
Sbjct: 377 QMGMVQTSARHLLALINDVLDISKIEAGQLSLAPVTFDLRSSIEKTAALVAPLAEKNEID 436

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +KV     +G    D++RL Q+   +L+NA+ F+  GS V +    D G ++ SV + G 
Sbjct: 437 LKVEIGKDVGDMTTDQRRLEQVVLNLLNNAVKFTETGS-VSINCRTDTGQYVISVADTGI 495

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +    +F  F         +  G GLGLSI +  + + GG + + S     +T   
Sbjct: 496 GIQPEDVAELFQPFHQVDTGLSRRHEGTGLGLSISKRLVAMMGGAIEVQSEPGKGSTFTV 555

Query: 787 RIPS 790
           R+P 
Sbjct: 556 RLPK 559


>gi|150018205|ref|YP_001310459.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
            beijerinckii NCIMB 8052]
 gi|149904670|gb|ABR35503.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
            beijerinckii NCIMB 8052]
          Length = 1036

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 110/522 (21%), Positives = 211/522 (40%), Gaps = 31/522 (5%)

Query: 294  DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
            D+  ++ +  Q      I+ + +  + +F+ +  +   N+           F+       
Sbjct: 490  DIEAQMLIEQQNKKLEAIISSASDGMFLFNPDNSVTLLNKE-------SEKFIYDINGYK 542

Query: 354  ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--QTLHVIVTSNP--- 408
             + +  +      +  N     +      K+SE+ K+      G  +T+H  V++ P   
Sbjct: 543  SIGDTCKDTKYYDKDGNLLEVNDLPGIKLKNSESIKNFIITAKGPDKTIHYSVSACPIYD 602

Query: 409  ----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                    +    ++T + + E K     +     +D++ + V VF  DG I L N   +
Sbjct: 603  DRKNLITKLISAHDITERFNNERKILEQKEQLQAILDNMQDSVYVFNKDGEIFLKNKMAQ 662

Query: 465  SLWKTEENRLSP-----------GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
                   +   P           G+ I        +        + F  I     ++  S
Sbjct: 663  KRMSHIGDYNHPNDTNKKFLDLDGSEIMAEDIPHCKIIRGEYVKEYFMKIKIGECEQYVS 722

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNS 571
            + GT     +    Y II   +    +      + ++ +   A  EKN+ L KA E+K+ 
Sbjct: 723  VSGTPVFDKEGNFAYGIINSRDITDFMENQKALEKIQIKLLEAEREKNDTLEKALEMKDE 782

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+  +S+E R+PL  I      +       L+ +  +Y+  I  +S   L LVN+ILD+ 
Sbjct: 783  FLSLISHEFRTPLNVINSAIQAIDYFCSEELSDRLKKYLRMIRLNSFRQLRLVNNILDIT 842

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
              +AG +K+N S I +  +   +  S+ T   + +I I   S  K      D ++  +I 
Sbjct: 843  RANAGRIKVNKSNIDIIFMTKAIVDSVYTYASQKSIDIIFSSSVKQKIVGIDDEKYERIL 902

Query: 692  SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749
              +LSNA+ F+ +G ++ +K           VK+ G  IP++    +F RF  V ++   
Sbjct: 903  LNLLSNAIKFTPEGKSISVKILSRRDGICIEVKDKGIGIPQEKADIIFERFGQVDSSLSR 962

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            Q  G G+GLS+V+ F+   GG +S+ S     +  +  +PS+
Sbjct: 963  QAEGTGIGLSLVKKFVEAIGGSISLKSKVGRGSAFSIFLPSE 1004



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 26/208 (12%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L    ++L+    AI  +  N  + + N+    ++           S++ +        K
Sbjct: 249 LKRQADMLNLSREAIFAWKLNGSITYWNKGVELMYGYT--------SDEAVGCISHDLLK 300

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRGGTIWMFE--- 417
               ++  T KE I      S   + T    +G  L +I TS+       G + + E   
Sbjct: 301 TVHSVDINTIKEIILEDGVWSGEIEHT--KKDGTKL-IIETSHQIFVDEYGQLVVLETNR 357

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +  LE +         + I  + + + ++  +    L+N +    +K        G
Sbjct: 358 DITERKKLEEEIKHQKAELDDIIQSIDDALVIYDSNKNCYLTNKSAEEYFK--------G 409

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIIT 505
           T++R I+      + + +G ++    +T
Sbjct: 410 TNLRRISNPNHFKFYDLNGDEISKEKMT 437


>gi|237720764|ref|ZP_04551245.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229449599|gb|EEO55390.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 810

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 119/606 (19%), Positives = 243/606 (40%), Gaps = 49/606 (8%)

Query: 216 LWANISYKKNTE----TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            W N    +       T   + ++A    + L  ++IK  M+     ++     +     
Sbjct: 217 TWWNHQIAERRAIILNTLDDMPEEAAEYRQTLEMQDIKSLMVVPLISKEEVWGYMGIDMV 276

Query: 272 GNNKSYKIVRV-----LNSFGEAGIAIDVSKEITVNDQL------THTYEILHNLTVAIA 320
              +S+  V       L +     I +  S+     D+L           I  NL   + 
Sbjct: 277 RTQRSWSNVDYQCFSSLANIISICIELRKSELQAKEDRLALDNSEKILRNIYKNLPAGVE 336

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAF------LATNPSN-DELLEFLRSANKLPEQLNWKT 373
           ++D++ YL   N   +E++ +          L  NP+   E+ E LR+   +   +N+  
Sbjct: 337 LYDKDGYLVDINDKELEIFGLSDKNEALGVNLFDNPNIPSEVKERLRAKEDVNFSINYDF 396

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            K N     +  ++ ++     N +   +  + N     +++  + T   +  TK     
Sbjct: 397 SKIN-----QYVDSRRNGIINLNTKVTALYDSQNRFINYLFINIDTTETTNAYTKIQEFE 451

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            +     D+   G A F       L+   +             G  +  +    +    E
Sbjct: 452 NLFLLIGDYAKVGFAHFN-----VLTRDGYAQDTWYRNLGEKEGIPMPQVIGVYAHVVPE 506

Query: 494 SDGW------DLFAAIITSFDDE----RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                     ++     TS   E    R++ + T   ++  V +Y        + +    
Sbjct: 507 DQAVLKNFVGEVKTGKATSLRKEVRVCRENGKYTWTSINVMVRDYRPQD-GIIEMLCINY 565

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E+ L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +      
Sbjct: 566 DITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET---DSR 622

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S++ +Y++ +  ++ +LL L++DILDL+ ++AG     Y+ + +N+   E+ +S++ K+ 
Sbjct: 623 SERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMKV- 681

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +             D+ R  Q+ S  ++NA+ F+ +G   +      +    F V
Sbjct: 682 SKGVELIFEEPFPECYIYTDKNRFTQVISNFINNALKFTQQGCITLGYEQVSHQKIKFYV 741

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++ G  IPE+  KSVF RFV      Q  G GLGLSI +S ++  GG + + S++   + 
Sbjct: 742 RDTGMGIPEEKQKSVFERFVKLNTFVQ--GTGLGLSICKSIVSQMGGEIGVDSTEGVGSC 799

Query: 784 INCRIP 789
                P
Sbjct: 800 FWFTHP 805


>gi|332524684|ref|ZP_08400883.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332107992|gb|EGJ09216.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 856

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 113/683 (16%), Positives = 237/683 (34%), Gaps = 68/683 (9%)

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE-LAETTLKCKKLSNHISVFKVLF 199
           F           ++I+G   GS        L    ++  +    +   +    S  + + 
Sbjct: 191 FSTELGRNAGARLEIDG---GSR---EFRELAEALNDTSSRLRDQMAAIGRAESRNEAIL 244

Query: 200 DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFK----EEIKKRMIS 254
            ++  ++   D  G +   N      +   G+  ++A+G     L      EE ++R ++
Sbjct: 245 QAVPDVILGLDAGGRVCVVNPG---VSSIFGLQPEEALGRPVSDLLPGLDCEEAERRTLA 301

Query: 255 SSALEKNFCETVSTLEHGNNK-------SYKIVRVLNSFG--EAGIAIDVSKEITVNDQL 305
              +  +             +          + R   + G   A +  D++++      L
Sbjct: 302 GLYMRSSGTYVARFEIEALRRGGTPFPAEVSLSRTETADGLRYAAVVRDMTEQRMTFSML 361

Query: 306 THTYEILHNLTVAIAIFD---QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                 L   T  + I D       + + N +F  +                       A
Sbjct: 362 NLYSRALECTTNGVVICDMSLPGYPVFYANPAFGRITGYAADETTGRSC----------A 411

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVT----SNPRGG---TIW 414
               +  +     E   ++ +   T      +  +G      +T     N  G     + 
Sbjct: 412 FLQGDDRDQPQLAELTRAIGRGESTQVVLRNYRKDGTLFFNELTVSPVPNAEGAPQHYVG 471

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--PDGRIKLSNPAFRSLWKTEEN 472
           +  ++T +           +      D   +G  VF     GR+   NPAF ++   +  
Sbjct: 472 VLNDVTERERARMAIAERSERLNAVFDLSPDGFVVFDGVDGGRLVYGNPAFFAMTGWDSG 531

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L  G  + +      +  + S  +   +  + + D         L      VL   +  
Sbjct: 532 VLDAGLGVDDFDRRFLKQCDASTPYSPVSLALAAGDRADGPDLLQLVRPERRVL-ARMAR 590

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              A    T +   D  R             + D +K+ F+   ++ELR+P+ ++ GFT+
Sbjct: 591 RAGAGHHETILFFRDITR-----------ETEVDRMKSEFLSTAAHELRTPMVSVFGFTE 639

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIVLNDLL 651
           LL    +     ++   ++ I   +++L+N+VN++LDLA ++A     L      L+ L+
Sbjct: 640 LLLRRPVS--EERRRDMLQTIHRQASLLINMVNELLDLARIEARQGKDLKREPCRLDSLV 697

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +    +  +   + ++I V           D ++  +  + +LSNA+ +S  G T+++ 
Sbjct: 698 TQAVGPMLIQGGAHELQIDVAHPD--CVLDVDPEKTNRALTNVLSNAVKYSPDGGTIVVT 755

Query: 712 AA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
                          V ++G  +  +    VF RF      G   G GLG+S+V+  + L
Sbjct: 756 TQSGELHGEPAVGVRVTDHGIGMTSEQLARVFERFYRADPSGNIPGTGLGMSLVKEIVEL 815

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
            GG V ++S+    TT+   +P 
Sbjct: 816 QGGRVDVASTPGRGTTVTLWLPL 838



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/413 (12%), Positives = 120/413 (29%), Gaps = 61/413 (14%)

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET----PEI--------------- 95
            +     ++ I    S+  ++L     + +  D         P +               
Sbjct: 223 SSRLRDQMAAIGRAESRNEAILQAVPDVILGLDAGGRVCVVNPGVSSIFGLQPEEALGRP 282

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +  L   +D  + +   L+   +++           E LR+ G  F   AE         
Sbjct: 283 VSDLLPGLDCEEAERRTLA-GLYMRSSGTYVARFEIEALRRGGTPF--PAEVSLSRTETA 339

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD-FLVWHRDQAGD 214
           +G      A +R   +       +   L  + L    +   +   SL  + V+       
Sbjct: 340 DG--LRYAAVVR--DMTEQRMTFSMLNLYSRALECTTNGVVICDMSLPGYPVF------- 388

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
             +AN ++ + T   G    +  G S    + + + +   +           + +   N 
Sbjct: 389 --YANPAFGRIT---GYAADETTGRSCAFLQGDDRDQPQLAELTRAIGRGESTQVVLRNY 443

Query: 275 K--------SYKIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNL----TVA 318
           +           +  V N+ G      G+  DV++       +    E L+ +       
Sbjct: 444 RKDGTLFFNELTVSPVPNAEGAPQHYVGVLNDVTERERARMAIAERSERLNAVFDLSPDG 503

Query: 319 IAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             +FD      L + N +F  +   D   L      D+         +      +     
Sbjct: 504 FVVFDGVDGGRLVYGNPAFFAMTGWDSGVLDAGLGVDDFDRRF--LKQCDASTPYSPVSL 561

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQVDLET 427
            + +  ++          P  + L  +      G   TI  F ++T + +++ 
Sbjct: 562 ALAAGDRADGPDLLQLVRPERRVLARMARRAGAGHHETILFFRDITRETEVDR 614


>gi|167647393|ref|YP_001685056.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
 gi|167349823|gb|ABZ72558.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
          Length = 844

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 108/698 (15%), Positives = 260/698 (37%), Gaps = 69/698 (9%)

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIY------SELAETTLKCKKLSNHISVFKV--L 198
             +  ++ I G  +G    +    ++G        S+ +    +  K +    +     +
Sbjct: 152 GTSGRSLWIGGGTTGRLYVVMATPIEGGRGFVIASSDPSRLVAEPAKGAASALMLANGKI 211

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
             +    +      G       ++  + E  G       G+S      ++  + ++   L
Sbjct: 212 LAAAGRPI-----EGATTLR-EAFSLSIEDLGDGPAALRGQSVDGRALDVAAQPLAQGDL 265

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
                    T+ + + +  +    L +    GIA+ +   +          E +      
Sbjct: 266 LAAAAAQPRTVANVDRQIMEGAVSLLAPLAVGIALALMLMLQSRRVEMAQREFV------ 319

Query: 319 IAIFDQNRYLQFHNRSFV-ELWEIDLAF---LATNPSNDELLEFLRSANKLPEQLNWKT- 373
               D  +  +    +    +WE +L       ++ +               E L+  + 
Sbjct: 320 ----DSEQRFRLAVEAARCGIWEWELGADQVFMSDVTGAMFGWGGGGVVAGQELLDRVSV 375

Query: 374 -WKENIFSVYKSSETH---KDTWHLPN---GQTLHVIVTSNPRG--------GTIWMFEN 418
             ++ +     ++ T+     ++ +P+   G+ + +       G          I +  +
Sbjct: 376 DHRDKVRQALANAATYGAFDVSFRVPSRDGGRAIWIDARGQGFGKPGEDGYSRIIGVALD 435

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T +   + +         + I+ +SE   ++   GR+ + N  +R+++  E   L PG 
Sbjct: 436 VTEERLAQARAQAAENRLRDAIESVSEAFVLWDRQGRLLMCNRNYRNVFNLEPKLLKPGA 495

Query: 479 HIRNIAATCS-RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL---- 533
               +    +    ++    D    +  +  ++ + +Q +    ++  L  +   +    
Sbjct: 496 PRNEVNRFAALAIKHDQPAPDGAKGVREAELNDGRWIQISERRTAEGGLVMTAADITAIK 555

Query: 534 --PNAQTMLTFVNVTDSVRAERALTEKNEALRKA----------DEIKNSFVQHVSYELR 581
               A+ +            ER+  +  E  RK           ++ K+ F+ ++S+ELR
Sbjct: 556 NQEEARRLNEEQLQHAVAGLERSQEQLAELARKYEMEKVKAEGANKAKSEFLANMSHELR 615

Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL  I GF++++     G L + +   Y   I  S   LL L+NDILD++ ++AG M L
Sbjct: 616 TPLNAINGFSEIMMNEMFGPLGDQRYKGYSLDIHNSGQHLLALINDILDMSKIEAGKMNL 675

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            +  + L D+  +  + +  +     +++++     L    AD + + Q+   +LSNA+ 
Sbjct: 676 KFEPLSLEDVTEDAVRLVRNRAEAAGLKLEIDFPP-LPEVEADYRAVKQVLLNLLSNAIK 734

Query: 701 FSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           F+ +   ++++A             SV + G  I  +    +   F      H    +G 
Sbjct: 735 FTPRAGRIVVRAEVRRDPLGERVRVSVTDTGIGIAAEDLARLARPFEQVESQHAKTTQGT 794

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL++ +S + +H G + ++S+    TT++  +P  +
Sbjct: 795 GLGLALTKSLVEMHDGALEMTSTPGEGTTVSFILPISQ 832


>gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 627

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 186/420 (44%), Gaps = 36/420 (8%)

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQV-----DLETKYNTLVKVQGETIDHLSEGVA 448
           L +G+T  +      RG  + + ++  +Q+     D   +  +  +      D + EG A
Sbjct: 73  LGDGETEALARLPL-RGDELALLQSTLLQISSKLQDSMQRLTSSEERFHALFDAMVEGCA 131

Query: 449 V----FGPDGR-----IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +    + PDG      I+ +N AF  L   +  ++  G        T S  Y +     +
Sbjct: 132 LHRIQYSPDGTPVNYVIEEANQAFEQLLGLKREQVV-GKPATEAYQTDSPLYLQEYATVV 190

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                + F+     L        D     S   +   +    F ++T+       L    
Sbjct: 191 ATGQPSRFESCCAPL--------DRHFRISACRVGPERFATLFEDITEQKSHVETLRSTM 242

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L+ A+E K+ F+  +S+E+R+PL  I G   LL+  ++      Q +Y+ +I +S+  
Sbjct: 243 QQLKSANEAKSRFLAVMSHEIRTPLNGITGMVQLLRDMEM---PPAQREYLNFIDSSAES 299

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LLN++NDILD + ++A  ++L         LL++  + +  +     + + ++    L  
Sbjct: 300 LLNVINDILDFSKIEAERLELELVPFQPLKLLHDTLRVMRLRTQAKGLLLSLVCPPDLAE 359

Query: 680 F-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF--SVKNNGSSIPED 733
             V D  RL QI + ++ NA+ F+  G  ++++A+   R +G  +F   V+++G  + + 
Sbjct: 360 VLVGDPHRLTQILNNLVGNAIKFT-AGGEIVVRASSRSRGDGTVLFAVEVQDSGIGMDQA 418

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +++F  F+       RR  G GLGL+I +  + L  G ++++SS    +T    +P K
Sbjct: 419 TQQTIFEPFIQADSSTSRRFGGTGLGLAICKQLVELMHGTITVASSPGNGSTFCFAVPLK 478


>gi|257059244|ref|YP_003137132.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589410|gb|ACV00297.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1611

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 107/529 (20%), Positives = 219/529 (41%), Gaps = 48/529 (9%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
            E  +    T    IL +    I    ++  +   N +  +        +    +   + +
Sbjct: 869  EQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLGYSAIEVIGKTTPAIIHD 928

Query: 358  FLRSANKLPEQLNWKTWK---------ENIFSVY----KSSETHKDTWH--LPNGQTLHV 402
                    PE++  K  +         E  F V+    +  E  +  W     +G    V
Sbjct: 929  --------PEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYIRKDGSRFPV 980

Query: 403  IVT----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            +++     N +G   G + +  ++T +   E       +     ++   +G+  +  +  
Sbjct: 981  LLSVTALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGDGLWDWNIETG 1040

Query: 456  IKLSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESDGWDLFAAIITS--FDDERK 512
                +P +  +     N L P  T    +       + +           TS  FD   +
Sbjct: 1041 EVYFSPRYAEMLGYRVNELPPNVTTWERLVYPKDMIWVKEILDSHLKDSTTSYDFDYRVR 1100

Query: 513  SLQGTLELLSDS----VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +  G  + ++D       +    PL   + + T  ++T     E  L +  E    A+  
Sbjct: 1101 TKSGQWKWIADYGKVVARDGEGKPL---RMLGTHKDITQRKHIELELQKAKETAIAANLS 1157

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+ELR+PL  I+GFT LL   +  SL++   + ++ I+ S   LL L++DIL
Sbjct: 1158 KSIFLANMSHELRTPLNAILGFTQLL--GRDTSLSAYHQERLQIINRSGEHLLGLIDDIL 1215

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            DL+ ++ G + L  +   L+ LL  V++ ++ K     I++ +  D  L  ++  D ++L
Sbjct: 1216 DLSKIETGQIALFLTDCDLSGLLLTVEEMLSPKAESKGIKLIIEKDDNLPRYIKIDSKKL 1275

Query: 688  LQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFV 743
             QI   +L+NA+ F+ +G+ T+ +  ++ +   +   F V++ G  I  D   ++F  FV
Sbjct: 1276 RQILINLLNNAIKFTHQGTVTLRVNLSKIDQKAVIVKFIVEDTGVGIAADELDNLFQLFV 1335

Query: 744  SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  +  +G GLGL+I +  + L GG + ++S     +  +  IP +
Sbjct: 1336 QAEAGKKINQGSGLGLAISQKLVQLMGGKIEVNSILNQGSIFSFEIPVE 1384



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/420 (13%), Positives = 137/420 (32%), Gaps = 47/420 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS------------ 221
           +  EL +     + L    + F+ +F ++   +   D+   I   N +            
Sbjct: 470 LQEELLKRHQIEEALQQKSAEFEAIFQAIPDAIIFADKTRHIQKVNSAFTYLFGYLPDEV 529

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y + TE   +  ++   + RK F    K++   +   E  +    ST+         +  
Sbjct: 530 YGQTTEMLYVSSEEYYEQDRKRFNLTAKEQ---NKPYEIRYRRKDSTIFFTETVGSSVKD 586

Query: 282 -VLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFV 336
              N  G  GI  D+S+     + L        ++ +N        D N         F+
Sbjct: 587 NQENVIGFVGIVRDISERKEAQETLKKYADEITDLYNNAPCGYHSLDSNGV-------FI 639

Query: 337 ELWEIDLAFLATNPSN----DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            + + +L +L           +LL+ L   ++     +++  K+       S  + + + 
Sbjct: 640 HINDTELTWLGYTREQVIGKVKLLDLLIPKSRKTFSQHFELLKQGY-----SINSLELSM 694

Query: 393 HLPNGQTLHVIVTSNP----RGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              NG  + +++  NP     G  I       +++ + + E           +  ++   
Sbjct: 695 LRSNGTVMSIMLNVNPIQDTEGNFIMSRATLFDISERKEAEKTLQKYADEITDLYNNAPC 754

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-II 504
           G      +G     N            ++       +I    S    + +  +   +  +
Sbjct: 755 GYHSLDSNGVFVQINNTELKWLGYTREQVIGKLKFSDIITPKSCQIFQQNFEEFKQSGWV 814

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
              + +     G +  +   +L  + I   + + +++   + D    + AL E+ +  ++
Sbjct: 815 KGLEFQMVCADGKIFPV---ILNATAIKDADGKFIMSRSTIFDITEQQAALRERKQIEQE 871



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 111/330 (33%), Gaps = 51/330 (15%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--- 224
            I  +    + L E     ++L    ++ K + DS ++ +    + G I+  N + +K   
Sbjct: 852  IFDITEQQAALRERKQIEQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLG 911

Query: 225  --NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGN---- 273
                E  G      I +  ++ ++  +  +     +E  F        +   + G     
Sbjct: 912  YSAIEVIGKTTPAIIHDPEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYI 971

Query: 274  NK-------SYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVA 318
             K          +  + NS G+     GI  D+++       L  + E     L      
Sbjct: 972  RKDGSRFPVLLSVTALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGDG 1031

Query: 319  IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
            +  ++      + +  + E+    +  L   P N    E L      P+ + W   KE +
Sbjct: 1032 LWDWNIETGEVYFSPRYAEMLGYRVNEL---PPNVTTWERL----VYPKDMIW--VKEIL 1082

Query: 379  FSVYKSSETHKDTWHL---PNGQTLHV-----IVTSNPRG---GTIWMFENLTVQVDLET 427
             S  K S T  D  +     +GQ   +     +V  +  G     +   +++T +  +E 
Sbjct: 1083 DSHLKDSTTSYDFDYRVRTKSGQWKWIADYGKVVARDGEGKPLRMLGTHKDITQRKHIEL 1142

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            +     +       +LS+ + +      ++
Sbjct: 1143 ELQKAKETAIAA--NLSKSIFLANMSHELR 1170


>gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1620

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 112/659 (16%), Positives = 238/659 (36%), Gaps = 82/659 (12%)

Query: 177 ELAE--TTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVF 233
           E A        ++ + +      L +S+   +   D     I+  N    K     G   
Sbjct: 337 EQARDGLIKASEEAAQNERFLDQLINSIAAGILIVDPADRTIVDVNDFALKLA---GRDR 393

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG--- 290
            + +G+        ++K       L +    +  TL     +   I++ ++     G   
Sbjct: 394 NEVVGKVCHRLTCPVEKDNCPILDLAQPRNMSKRTLLTKEGREIPILKTVSHIVRDGREL 453

Query: 291 ---IAIDVSKEITVNDQLTHTYE---------------ILHNLTVAIAIFDQNRYLQFHN 332
                +D++ E    ++L  T +               I+      I + D    +   +
Sbjct: 454 LLETFVDITDEERSREELEKTKKELEDKVTERTAHLRGIIDTANNGIIVIDSKGRITEFS 513

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            +  E++      +               +  +PE    K+        Y +    K   
Sbjct: 514 PAASEIFGYSREEIMGR----------DISLLMPEPH--KSKHAQYIRNYLNGGAPKVIG 561

Query: 393 HL-------PNGQTLHVIVT-----SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
                     +G    + +       N     + +  ++TV+  +E +         + +
Sbjct: 562 RQIVLDAQKKDGSIFPMEIALNTAVVNDDMIFVAVLRDVTVRKRMEEELENEQHRLQKIL 621

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           +    G  V   +   + +N +  ++               ++     R Y +    +  
Sbjct: 622 ETSPVG-VVVTVNDVARFANKSMAAMG-------------LSVGTQARRAYADPVDRERM 667

Query: 501 AAI------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            A+      +  F+ + ++  G  E+L   +  Y          +   +++T+   AE A
Sbjct: 668 LALLAENGRVEHFETKFRARDG--EILDVILFCYDFDYHGERAILGWVIDITERKAAEEA 725

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E   +A + K+ F+ ++S+E+R+P+  I+G + L   ++   L  KQ +Y+E + 
Sbjct: 726 LAKAKEQAEEATKAKSDFLANMSHEIRTPMNAIMGLSHLALQTE---LTDKQRKYIEKVY 782

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++NDILD + ++AG + + +    L D+   +   +  K  E  + +     
Sbjct: 783 RSAENLLGILNDILDFSKIEAGKLDMEHVAFHLEDVFENMASMVGLKAEEAGLELLFDLP 842

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSI 730
           G + + V D  RL QI   + +NA+ F+ +G  V    +++         FSVK+ G  +
Sbjct: 843 GNMPTLVGDPLRLGQILINLGNNAVKFTPRGEVVVSARVIEETGTGAKLHFSVKDTGIGL 902

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            E+  K +F  F        R   G GLGL+I +    L GG + + S     +  +  
Sbjct: 903 SEEQRKKLFQHFSQADASTTRKYGGAGLGLAICKKLTELMGGDIWLESEPGMGSVFHFT 961


>gi|312886915|ref|ZP_07746520.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311300599|gb|EFQ77663.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 766

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 99/535 (18%), Positives = 201/535 (37%), Gaps = 42/535 (7%)

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI-----FDQNRYLQFHNRSFVELW 339
                G  I+++ +     +L  T + L   +  +A+      D        +    +++
Sbjct: 109 PEYMLGNHINLTAQKLAEKELKRTRDFLERTSE-VAMVGGWELDMLHQKVTWSAVTRQIF 167

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNG 397
            +D  F    P+      F R      E  +     E       + E +     +    G
Sbjct: 168 GVDKDF---EPATGTSAFFFR------EGKDRNLLLEAFHKAITTGEPYDLELQIITATG 218

Query: 398 QTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
                    +P            +F+++T++   E       +     I +    +A+  
Sbjct: 219 ALKWTRTVGHPEFEDGKCIRIYGIFQDITIRKTQEEALRQKQEQLETFIKYSPVAIAMMD 278

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
                   +  + S +  +   L   +H          + +      L   +I   +D  
Sbjct: 279 KHFNYVAVSDVWVSCYNLDMPTLLGRSHFEVFPELPGIWMSYLSRC-LRGEVIKKEEDSF 337

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
             + G  E L   V  +          ++    +T+  + + AL +  E   +A  IK+ 
Sbjct: 338 FLINGRREWLRWEVRPWYESAGTVGGIIMFTELITEKKQIQEALIKAKEDAEQAALIKSR 397

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  +IGFT+LL  +        Q + +  +  S+  L+ ++ND+L+L 
Sbjct: 398 FLSIMSHEIRTPMNGVIGFTNLLLKNP----REDQREALNVLKFSAQNLMVIINDVLNLN 453

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
            +DAG ++L   +  L +LL  + +S      E ++ + V  D  L   F  D  R+ Q+
Sbjct: 454 KIDAGKVELENISFDLYELLQNICRSQENDAKEKHLNLSVQFDYSLPFWFKGDPVRIGQV 513

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            + +++NA+ F++ G   I  A     +      F+V + G  IPE   + +F  F    
Sbjct: 514 ITNLVNNAIKFTAAGRVSISTALVGEHEGKMTIGFAVSDTGIGIPETKQEHIFELFSQAE 573

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC-------RIPSKE 792
               R   G GLGL+I +  + L G ++ + S+    +            +P +E
Sbjct: 574 SDTTRIYGGTGLGLTITKRLLELMGSNIQLKSTPGEGSIFYFDLELEKSTLPVEE 628


>gi|218246196|ref|YP_002371567.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166674|gb|ACK65411.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1578

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 105/529 (19%), Positives = 217/529 (41%), Gaps = 48/529 (9%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
            E  +    T    IL +    I    ++  +   N +  +        +    +   + +
Sbjct: 836  EQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLGYSAIEVIGKTTPAIIHD 895

Query: 358  FLRSANKLPEQLNWKTWK---------ENIFSVY----KSSETHKDTWH--LPNGQTLHV 402
                    PE++  K  +         E  F V+    +  E  +  W     +G    V
Sbjct: 896  --------PEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYIRKDGSRFPV 947

Query: 403  IVT----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            +++     N +G   G + +  ++T +   E       +     ++   +G+  +  +  
Sbjct: 948  LLSVTALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGDGLWDWNIETG 1007

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---FDDERK 512
                +P +  +     N L P                  +  D      T+   FD   +
Sbjct: 1008 EVYFSPRYAEMLGYRVNELPPNVTTWEGLVYPKDMIWVKEILDSHLKDSTTSYDFDYRVR 1067

Query: 513  SLQGTLELLSDS----VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +  G  + ++D       +    PL   + + T  +++     E  L +  E    A+  
Sbjct: 1068 TKSGQWKWIADYGKVVARDGEGKPL---RMLGTHKDISQRKHIELELQKAKETAIAANLS 1124

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+ELR+PL  I+GFT LL   +  SL++   + ++ I+ S   LL L++DIL
Sbjct: 1125 KSIFLANMSHELRTPLNAILGFTQLL--GRDTSLSAYHQERLQIINRSGEHLLGLIDDIL 1182

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            DL+ ++ G + L  +   L+ LL  V++ ++ K     I++ +  D  L  ++  D ++L
Sbjct: 1183 DLSKIETGQIALFLTDCDLSGLLLTVEEMLSPKAESKGIKLIIEKDDNLPRYIKIDSKKL 1242

Query: 688  LQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFV 743
             QI   +L+NA+ F+ +G+ T+ +  ++ +   +   F V++ G  I  D   ++F  FV
Sbjct: 1243 RQILINLLNNAIKFTHQGTVTLRVNLSKIDQKAVIVKFIVEDTGVGIAADELDNLFQLFV 1302

Query: 744  SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  +  +G GLGL+I +  + L GG + ++S     +  +  IP +
Sbjct: 1303 QAEAGKKINQGSGLGLAISQKLVQLMGGKIEVNSILNQGSIFSFEIPVE 1351



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 58/425 (13%), Positives = 133/425 (31%), Gaps = 57/425 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS------------ 221
           +  EL +     + L    + F+ +F ++   +   D+   I   N +            
Sbjct: 437 LQEELLKRHQIEEALQQKSAEFEAIFQAIPDAIIFADKTRHIQKVNSAFTYLFGYLPDEV 496

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y + TE   +  ++   + RK F    K++   +   E  +    ST+         +  
Sbjct: 497 YGQTTEMLYVSSEEYYEQDRKRFNLTAKEQ---NKPYEIRYRRKDSTIFFTETVGSSVKD 553

Query: 282 -VLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFV 336
              N  G  GI  D+S+     + L        ++ +N        D N         F+
Sbjct: 554 NQENVIGFVGIVRDISERKEAQETLKKYADEITDLYNNAPCGYHSLDSNGV-------FI 606

Query: 337 ELWEIDLAFLATNPSN----DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            + + +L +L           +LL+ L   ++     +++  K+       S  + + + 
Sbjct: 607 HINDTELTWLGYTREQVIGKVKLLDLLIPKSRKTFSQHFELLKQGY-----SINSLELSM 661

Query: 393 HLPNGQTLHVIVTSNP----RGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              NG  + +++  NP     G  I       +++   + E           +  ++   
Sbjct: 662 LRSNGTVMSIMLNVNPIQDTEGNFIMSRATLFDISEHKEAEKTLQKYADEITDLYNNAPC 721

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G      +G     N            ++       +I            G  +F     
Sbjct: 722 GYHSLDSNGVFVQINNTELKWLGYTREQVIGKLKFSDIIT--------PKGCQIFQQNFE 773

Query: 506 SFDDE--RKSLQGTLELLSDS----VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            F      K L+  +          +L  + I   + + +++   + D    + AL E+ 
Sbjct: 774 EFKQSGWVKGLEFEMVCADGKIFPVILNATAIKDADGKFIMSRSTIFDITEQQAALRERK 833

Query: 560 EALRK 564
           +  ++
Sbjct: 834 QIEQE 838



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 111/330 (33%), Gaps = 51/330 (15%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--- 224
            I  +    + L E     ++L    ++ K + DS ++ +    + G I+  N + +K   
Sbjct: 819  IFDITEQQAALRERKQIEQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLG 878

Query: 225  --NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGN---- 273
                E  G      I +  ++ ++  +  +     +E  F        +   + G     
Sbjct: 879  YSAIEVIGKTTPAIIHDPEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYI 938

Query: 274  NK-------SYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVA 318
             K          +  + NS G+     GI  D+++       L  + E     L      
Sbjct: 939  RKDGSRFPVLLSVTALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGDG 998

Query: 319  IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
            +  ++      + +  + E+    +  L   P N    E L      P+ + W   KE +
Sbjct: 999  LWDWNIETGEVYFSPRYAEMLGYRVNEL---PPNVTTWEGL----VYPKDMIW--VKEIL 1049

Query: 379  FSVYKSSETHKDTWHL---PNGQTLHV-----IVTSNPRG---GTIWMFENLTVQVDLET 427
             S  K S T  D  +     +GQ   +     +V  +  G     +   ++++ +  +E 
Sbjct: 1050 DSHLKDSTTSYDFDYRVRTKSGQWKWIADYGKVVARDGEGKPLRMLGTHKDISQRKHIEL 1109

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            +     +       +LS+ + +      ++
Sbjct: 1110 ELQKAKETAIAA--NLSKSIFLANMSHELR 1137


>gi|317471229|ref|ZP_07930594.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901276|gb|EFV23225.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 1090

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 93/528 (17%), Positives = 203/528 (38%), Gaps = 42/528 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             +++Q  +   + + +   IA+   ++       NR  ++L +     +      D +L
Sbjct: 287 KKLSNQADYIGHLYNAVPEGIALISVDKPYRFLQLNRQGMQLLKYPEGDVE-----DTVL 341

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV---TSNPRGG-- 411
                    P+  +                T +       G+   V      +    G  
Sbjct: 342 GEPIENLIHPDDYDRLVKMIETADTDGRKSTFEFRVQRAGGEYFWVSGILERTFDENGEP 401

Query: 412 -TIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGV-AVFGPDGRIKLSNPAFRS--L 466
             +  F ++T +   E +    +++ +   +  +S     +   +      N  +    L
Sbjct: 402 VFVAAFHDVTEEKLAEQEAEREILQERITLVGAISNAYPVIISINLTEDTLNFIYVKPGL 461

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---------FDDERKSL-QG 516
                 + S     +++A T    Y +          +T          F + R+ L  G
Sbjct: 462 MIGLGQQKSYSRLFQDMALTVHPEYADEFRHRFGTEYLTETLGHEKDEVFLEVRQKLTDG 521

Query: 517 TLELLSDSVLE----YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
               +S  ++     YS   L    +  T     +  +  +AL    +    A++ K  F
Sbjct: 522 RYHWISTQIINVDNPYSNDKLAILISRRTDEQRYEEEQQRQALQTALDNANAANKAKGQF 581

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+++R+P+  IIG + +   S       +  + +  I+ S   LL+L+NDILD++ 
Sbjct: 582 LSNMSHDIRTPMNAIIGMSAI--ASAHLDDRERIMECLGKINLSGKHLLSLINDILDMSK 639

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIF 691
           +++G + L      L +L+ +  + I  +     IR+KV     K  + + D  R+ Q+ 
Sbjct: 640 IESGKLSLRKEPFNLAELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVC 699

Query: 692 SKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             ILSNA+ ++ +G  + ++  +++       +FIF   + G  +     K +F+ F   
Sbjct: 700 INILSNAVKYTPEGGKIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERA 759

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +     +  G GLG++I ++ I+L  G + + SS    +     +P K
Sbjct: 760 SDSTSSKMTGTGLGMAITKNIIDLMSGDIQVESSPGKGSVFTVTLPLK 807


>gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
 gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
          Length = 650

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 123/242 (50%), Gaps = 4/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L +    L++ D++K+  V  VS+ELR+PLT+I G+ +L+    +G++   Q + 
Sbjct: 409 KQAEELEKSYNELKELDKLKSDIVAIVSHELRTPLTSIKGYVELVLDGTMGAITESQKKC 468

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E  + +   L  L++++LDL+ ++ G ++++   I L +L+  V  ++     E NI I
Sbjct: 469 LEIANKNIDRLKRLIDNMLDLSKIEHGELEMHMEEINLKELVENVVDTLKPLADEKNINI 528

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +        D+ R+ Q+ + ++ NA+ FS     V ++A ++       + +NG  
Sbjct: 529 IYKIND--IIMKGDKDRITQVLTNLIENAIKFSPVNGKVEIQALKEGNSVHIKIIDNGPG 586

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP+     +F+RF       +R   G GLGL++ +S I  HGG + + S     +  +  
Sbjct: 587 IPKKDLDRIFDRFYQVDSPEKRIKGGSGLGLAVCKSIIETHGGTIWVESKLGSGSVFHII 646

Query: 788 IP 789
           IP
Sbjct: 647 IP 648


>gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG6]
 gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1149

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 156/379 (41%), Gaps = 26/379 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++ +E             ++ +++       + +    N     L       L  G  I
Sbjct: 375 ERMRVEEALRQSSARVTSILESIADAFFAVDMEWKFVYVNDEAARLLGQPTTSL-IGQSI 433

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLPNAQTM 539
            + AA             L+A + T   +  K ++  +     D  L   I P  +   +
Sbjct: 434 WDSAADRVGL--------LYAELYTQAMESLKPIRDEVYFAPLDVWLAMRIYPWSDGLAI 485

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               +VT +  A+ AL E  EA   A   ++ F+ ++S+E+R+P+  +IG T LL  +  
Sbjct: 486 YIQ-DVTAAHAAQAALIEAKEAAEHATRARSEFLANMSHEIRTPMNGVIGMTGLLLDT-- 542

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN +Q +Y E I +S   LL ++NDILDL+ +++G M+L      + + +      +A
Sbjct: 543 -PLNERQREYAETIRSSGESLLTIINDILDLSKIESGRMELEQQPFEIQECVESALDLVA 601

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---- 714
                  + +  +    +    ++D  RL QI   +L NA+ F+  G  V L+ +R    
Sbjct: 602 PTAFAKGLDLAYLIAADVPMMLISDVTRLRQILVNLLGNAVKFTEHGE-VTLQVSRYPDF 660

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
               D    +  V++ G  IP D    +F  F  V  +      G GLGL I +    + 
Sbjct: 661 DLEADQVHLVIEVRDTGIGIPPDKLDRLFRAFSQVDASTTRTYGGTGLGLVICKRLSEML 720

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG +S+ S+    +T    
Sbjct: 721 GGGISVESAPGQGSTFRVE 739


>gi|317151760|ref|YP_004119808.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942011|gb|ADU61062.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1180

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 87/502 (17%), Positives = 195/502 (38%), Gaps = 20/502 (3%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   V + +     +      AI I D    +   N   ++++ +    +       ++
Sbjct: 399 ERTSEVKETMEALRTVFDASHDAIFIHDVTGRILEANERMLKMYGLSADQIHDVSIARDI 458

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
               R          W++        ++            + +     +  + +   +  
Sbjct: 459 --SSRDNAVYRLSSYWRSVLNGEPQNFEWKARRPHDGAEFDVEVYLNRIVFHGQEAILTN 516

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++TV+ + E +    +      +++   G+A+     R+   N     ++      L 
Sbjct: 517 VRDITVRKESENRIRQTLSKFEAILENSLMGIAM-SKGRRLATINRRGAEIFGRTPAELV 575

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLP 534
            G+ +  + ++ +   +         +    F+ E+  L      +   +   ++     
Sbjct: 576 -GSELAALLSSSNAVTDFVRTARDALSQSGEFNTEQAFLDSEGNTVWCRMYAKAVDQGSL 634

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   +  + ++T   RA+  L    E    A+  K+ F+  +S+E+R+P+  I+G TD+ 
Sbjct: 635 DKGVIWAWDDITAQRRAQDDLMRAREDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTDI- 693

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +   SL ++Q  Y++ +  S+  LL ++NDILDL+ ++A  + L+     L   +   
Sbjct: 694 --TLQTSLTTEQRDYLKTVMDSAQHLLGIINDILDLSKIEARKLCLDRVDFDLPSHVRTT 751

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL--- 710
            + +  +  +  +   +  D  + + V  D   L Q+   ++ NA+ F+ KGS  +L   
Sbjct: 752 LKGLEMQARQKGLDFVLELDQDVPACVKGDPLSLRQVLMNLVGNAIKFTHKGSIRVLVSP 811

Query: 711 -KAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            +A  D  D       F V + G  IPE    ++F  F          G GLGL+I +  
Sbjct: 812 AQAQPDADDQRTVGVRFEVADTGIGIPESFMGTIFQSFSQ--TTRAFGGTGLGLAICKQL 869

Query: 765 INLHGGHVSISSSDEGVTTINC 786
           I L GG +S++S+    +  + 
Sbjct: 870 IGLMGGDISVTSTMGRGSVFSF 891



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 92/277 (33%), Gaps = 24/277 (8%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
               +  ++   +   + +FD+    ++  D  G IL AN    K               
Sbjct: 396 RVRERTSEVKETMEALRTVFDASHDAIFIHDVTGRILEANERMLKMYGLSADQIHDVSIA 455

Query: 240 SRKLFKEEIKKRMIS-----SSALEKNFCETVSTLEHGNNKSYKIV--RVLNSFGEAGIA 292
                ++    R+ S      +   +NF         G     ++   R++    EA + 
Sbjct: 456 RDISSRDNAVYRLSSYWRSVLNGEPQNFEWKARRPHDGAEFDVEVYLNRIVFHGQEAILT 515

Query: 293 --IDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
              D++     E  +   L+    IL N  + IA+  + R L   NR   E++    A L
Sbjct: 516 NVRDITVRKESENRIRQTLSKFEAILENSLMGIAM-SKGRRLATINRRGAEIFGRTPAEL 574

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                  EL   L S+N + + +  +T ++ +    + +          N     +   +
Sbjct: 575 VG----SELAALLSSSNAVTDFV--RTARDALSQSGEFNTEQAFLDSEGNTVWCRMYAKA 628

Query: 407 NPRG----GTIWMFENLTVQVDLETKYNTLVKVQGET 439
             +G    G IW ++++T Q   +       +     
Sbjct: 629 VDQGSLDKGVIWAWDDITAQRRAQDDLMRAREDAEAA 665


>gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 701

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 107/421 (25%), Positives = 197/421 (46%), Gaps = 36/421 (8%)

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ-VDLETKYNTLVKVQ---GETIDHLSE 445
           + W +    T    + +      I    ++  + +   T Y+ L++ +    +T+  L  
Sbjct: 287 EAWAVLVLSTNREPIFTTRDLYFIQALADVAARPLQRATSYSELLEARMQLQQTLASLPL 346

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGWDLFAAI 503
           G+A+   +GRI  +NPA+  LW+ E+       ++    +     R  +  +  D FA  
Sbjct: 347 GLALTDGEGRILRTNPAWYQLWQIEQPADETALYLPWDILPLLLKRLSHPLELTDFFAEC 406

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEAL 562
               D+  +      E L D  L+    P+ +AQ  +T    V + V  ER +       
Sbjct: 407 QAQPDETLELALRLSEPLQD--LKLRSTPVKDAQHQITGRLVVIEDVTREREI------- 457

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              D++KN FV  VS+ELR+PLT+I+G+T+LL   +   +  ++ ++V+ +   +  L  
Sbjct: 458 ---DKMKNEFVSVVSHELRTPLTSILGYTELLLAREFKPV--ERQEFVQTVYDQANQLSK 512

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +V+D+L+L+ +DAG +KLN   + L+ ++ E+ + +   + E + R+ +     +    A
Sbjct: 513 MVDDLLNLSRLDAGQIKLNRWVVSLHQIIREITKQLNETLSEKH-RLLIDIPEGIPPIFA 571

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------DNGDFIFSVKNNGSSI 730
           D+ ++ QI + +LSNA+ +S  G  V L                +    I +V++ G  I
Sbjct: 572 DKDKVRQILTNLLSNAIKYSPNGGQVALIVRELRKVPPGAPPLPNERSVIIAVRDQGMGI 631

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            E+    +F RF    +   R   G GLGLSI ++ I LHGG +  +S+    TT    +
Sbjct: 632 SEEDLPKLFTRFFRVDNSTTRKIGGTGLGLSITKALIELHGGRIWATSTLGRGTTFWVTL 691

Query: 789 P 789
           P
Sbjct: 692 P 692



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 81/247 (32%), Gaps = 17/247 (6%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
             + +   +  W+    G +          T    ++   A     +L   +++  ++  
Sbjct: 231 AGISERTSWP-WNVGVVGRV--------ARTGKAALLTDIAHDSEWQLSTPDVRAEIVVP 281

Query: 256 SALEKNFCETVSTLEHGN----NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
             +E      +    +       +    ++ L       +    S    +  ++    + 
Sbjct: 282 VRVEGEAWAVLVLSTNREPIFTTRDLYFIQALADVAARPLQRATSYSELLEARMQ-LQQT 340

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN---PSNDELLEFLRSANKLPEQ 368
           L +L + +A+ D    +   N ++ +LW+I+     T    P +   L   R ++ L   
Sbjct: 341 LASLPLGLALTDGEGRILRTNPAWYQLWQIEQPADETALYLPWDILPLLLKRLSHPLELT 400

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
             +   +       + +    +       ++  V    +   G + + E++T + +++  
Sbjct: 401 DFFAECQAQPDETLELALRLSEPLQDLKLRSTPVKDAQHQITGRLVVIEDVTREREIDKM 460

Query: 429 YNTLVKV 435
            N  V V
Sbjct: 461 KNEFVSV 467


>gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1101

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 101/509 (19%), Positives = 208/509 (40%), Gaps = 27/509 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           + + +ND++    E++     A+ I D    + + N+SF  L+      +  N       
Sbjct: 332 RRLRLNDRIRVLSEVVEKSPAAVMITDPKGAIIYINKSFETLFGYSAEQVLGNTP----- 386

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRGGT 412
             +  +    + +  + W+        S E    T     GQ       V    N +G  
Sbjct: 387 -RMLKSGLTEDFVYAELWQTITAGGVWSGEMVNRTAC---GQLCWTSCIVSGLINDQGEM 442

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            +     +   + + +   L K+    ++     + +   +G I+  NP F ++      
Sbjct: 443 GYYVAVESDTTEAKQRELDLHKL-STAVEQSPIAIVITNQEGAIEYVNPHFCNISGYSAQ 501

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +         +   +  Y +     +    +   +   +   G+    S ++     I 
Sbjct: 502 EVLGENPRLLKSGEMAAAYYQELWSTITRGEVWRGEFRNRRKNGSTYWESATIAPVRDIN 561

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              +  +    +++     E  L E+    ++A  +K+ F+  +S+E+R+P+  I+G T 
Sbjct: 562 GQTSHYIALKEDISLRKSYEEQLIEERHKYQEASRVKSDFLATISHEIRTPMNTILGMTG 621

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LK S    L+ +Q + ++ I A+++ LL ++ND+LD +  +AG ++L  + ++L  +++
Sbjct: 622 ELKESH---LSGEQLKLLQSIQAAASNLLQIINDVLDFSRFEAGSIELFIAPLLLRQVVS 678

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           E +Q +A ++ +  IR     D  +  F+  D QRL Q+   +L NA  F+ +G+  +L 
Sbjct: 679 EAEQIVAFQIRKQGIRFLTYMDSTVPPFIFGDAQRLRQVLVNLLVNASKFTEQGTIALLV 738

Query: 712 -------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
                   A D  +  F V + G  I E     +F+ F         Q  G GLGLSI +
Sbjct: 739 HLQPGKAEASDQQELCFRVVDTGIGISEAHRDKLFHAFSQADGSITRQYGGTGLGLSISK 798

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + + GG +   S     +T    +P +
Sbjct: 799 HLVGMMGGTIGFESCQGVGSTFWFTLPLQ 827



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 33/278 (11%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             +  +L++ I V   + +     V   D  G I++ N S++      G   ++ +G + 
Sbjct: 330 ERRRLRLNDRIRVLSEVVEKSPAAVMITDPKGAIIYINKSFETLF---GYSAEQVLGNTP 386

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK--------IVRVLNSFGEAGIAI 293
           ++ K  + +  + +   +      V + E  N  +          +  ++N  GE G  +
Sbjct: 387 RMLKSGLTEDFVYAELWQTITAGGVWSGEMVNRTACGQLCWTSCIVSGLINDQGEMGYYV 446

Query: 294 ----DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-AFLAT 348
               D ++       L      +    +AI I +Q   +++ N  F  +        L  
Sbjct: 447 AVESDTTEAKQRELDLHKLSTAVEQSPIAIVITNQEGAIEYVNPHFCNISGYSAQEVLGE 506

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           NP        L  + ++      + W           E         NG T     T  P
Sbjct: 507 NP-------RLLKSGEMAAAYYQELWSTITRGEVWRGEFRN---RRKNGSTYWESATIAP 556

Query: 409 RGGT-------IWMFENLTVQVDLETKYNTLVKVQGET 439
                      I + E+++++   E +         E 
Sbjct: 557 VRDINGQTSHYIALKEDISLRKSYEEQLIEERHKYQEA 594



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           + E     W   N     V+++  P   T+ +   L  Q     + N  ++V  E ++  
Sbjct: 293 TDEDILSGWIHKN-TAFIVLISITPI-ATMLLIGLLLWQERRRLRLNDRIRVLSEVVEKS 350

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              V +  P G I   N +F +L+     ++  G   R + +  +  +  ++ W    A
Sbjct: 351 PAAVMITDPKGAIIYINKSFETLFGYSAEQVL-GNTPRMLKSGLTEDFVYAELWQTITA 408


>gi|254414421|ref|ZP_05028187.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178651|gb|EDX73649.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 992

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 115/777 (14%), Positives = 264/777 (33%), Gaps = 60/777 (7%)

Query: 54  KVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL 113
           K  +T + L E      +Y  +   +N     W+   +      +  Q +     +    
Sbjct: 234 KQKQTQAILQETQ---ERYELVAEGSNDGLWDWNLLTDQVYYSPRWSQTLGYHVDEIS-D 289

Query: 114 SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGR---VSGSCAFLRILS 170
            F  WL   H     +     +          E ++   +  EG    +    A LR  +
Sbjct: 290 RFTEWLNRIHPGDRERVLATFQDYIDGLTPSLELEH-RLLDKEGNYRWILSRGASLRDAN 348

Query: 171 -----LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD--ILWANISYK 223
                + G   ++++       L       + L      +++ R  +G+  + + + +  
Sbjct: 349 GKPYRIVGSNRDISDRKRTLSTLRLTQERLRYLLSQSPAVLYSRQVSGNYGVTFMSDNTA 408

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA----LEKNFCETVSTLEHGNNKSYK- 278
                    F             E   R+ ++         +  E     + G  +    
Sbjct: 409 TVVGYSAQDFITNPPFWVNHIHPEDVPRVCANLPKVFDTGHHVYEYRFLHQDGTYRWMHD 468

Query: 279 -----IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL-----------HNLTVAIAIF 322
                     N     G   D+++       L    + L            N  +A+  +
Sbjct: 469 ELKLIYDEAGNPLEMVGFWTDITENKHAELILKQQTKALQDAHQRLGFHVENSPLAVVEW 528

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D    +Q  ++   E++    + +    S D    +      + ++++       +    
Sbjct: 529 DNQFRVQRWSKQAEEIFGWTTSEVFGKRSGDWQFIYPDDIEIVRQEMS------QLLDGS 582

Query: 383 KSSETHKDTWHLPNGQTL---HVIVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKV 435
            SS  +++     +G+ +             G     + + +++T     ET      ++
Sbjct: 583 TSSVVYQNRNLTKDGRVVICQWYESVLLDESGKMVSILSLVQDITEAKQTETALRHNAEM 642

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +++    +A+F      +L +  +   +  E   +    H   +       + +  
Sbjct: 643 LRLLLEYTPAAIAMFDKQMNYQLVSRRWLEDYNLENQDIIGKNHY-ELFPEIPDTWKQIH 701

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              L  A     +D      G  + +S  +  +       +  ++    VT+  +A+  L
Sbjct: 702 QRCLQGASEQCDEDLFIRADGEKQWISWEIRPWIGNSGDISGIIMNTEVVTERKQAKEKL 761

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E N+ L +++     F    S++L+ PL  +  +  LL       L++K  +Y+ YI  
Sbjct: 762 KELNQELWQSNRDLEQFAYVASHDLQEPLRAVNSYAQLLSRKYQNQLDAKADKYLHYIMD 821

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +T +  L+ND+L+ + V      L         ++ +  +++   + E+   +   +  
Sbjct: 822 GATRMQQLINDLLEFSRVGTRGKPL--QPTDSETIIRQAMENLNVAIAESQAIVTYDA-- 877

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDF---SSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            L + +AD+ +L Q+F  ++ NA+ F   +     V + A     ++ F V++NG  +  
Sbjct: 878 -LPTVIADQTQLTQLFQNLIGNAIKFRRETPPN--VHISAQNQGNEWTFVVQDNGIGMES 934

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F  F     R    G G+GL+I +  +  HGG + ++S     TT    IP
Sbjct: 935 EYLDRIFTIFQRLHSRRDYPGTGIGLAICKKIVERHGGRIWVNSELGIGTTFYFTIP 991



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 105/315 (33%), Gaps = 28/315 (8%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET-VSTL 269
             G I   N ++ K          ++      +  E++   + + +              
Sbjct: 32  PDGRIGQLNPAWCKVLGWT-PEKVRSRHWIELVHPEDVTATLTALATKAVPVSFRNRYRH 90

Query: 270 EHGNNKSYKIVRVLNSFGEA-GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
           + GN    +     +  G    +A +++  +  + +L   + +  NL   +AI   + Y 
Sbjct: 91  DQGNYHWLEWTLNYDEAGYGYAVAREITDSLPRDCELDRFFNMSVNL---MAIAGSDGYF 147

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           +  N +F  +    L  L T P     LEF+      P+       +    +   +S   
Sbjct: 148 KRVNPAFERVLGYPLTELLTQP----FLEFVH-----PDDRVATLTEIEKLATGTTSIQF 198

Query: 389 KDTWHLPNG--QTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           ++ +   +G  + L     S P  G I+    ++T Q   +       +      +  ++
Sbjct: 199 ENRYRCQDGSYRWLAWNSASFPAKGLIYAVGCDITKQKQTQAILQETQERYELVAEGSND 258

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G+            N     ++ +     + G H+  I+   + + N     D    ++ 
Sbjct: 259 GLW---------DWNLLTDQVYYSPRWSQTLGYHVDEISDRFTEWLNRIHPGDR-ERVLA 308

Query: 506 SFDDERKSLQGTLEL 520
           +F D    L  +LEL
Sbjct: 309 TFQDYIDGLTPSLEL 323


>gi|332667143|ref|YP_004449931.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335957|gb|AEE53058.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 871

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 8/254 (3%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            T        +    +  + E    ++  K+ F+ ++S+E+R+P+  I G TD+L     
Sbjct: 469 YTRKTQKLLQQKNEIIEAEKENAENSERAKHQFLANMSHEIRTPMNAIKGMTDILIRR-- 526

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            + N  Q +Y+  I  SS  LL ++NDILD++ ++AG ++L +    + +L+N V   + 
Sbjct: 527 -NPNEDQKEYLNGIKQSSDSLLVIINDILDISKIEAGKVELEHEPFSVVELVNNVHTIMQ 585

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDN 716
            K  E  + +      +  +   D  RL QI   ++ NA+ F+ KG   ++V  +   D 
Sbjct: 586 FKAEEKGLGLLKDIPTENLTVQGDATRLRQILLNLIGNAIKFTEKGLVTTSVKSEQVGDK 645

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +  F+V + G  I  D    +F  F         +  G GLGLSI +  + LH G + +
Sbjct: 646 INVHFTVSDTGIGIDADRMGKIFESFEQAYSDTSRKFGGTGLGLSISKKLVELHNGKIWV 705

Query: 775 SSSDEGVTTINCRI 788
            S     +  +  I
Sbjct: 706 ESEKGKGSQFHFTI 719


>gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 576

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 120/523 (22%), Positives = 211/523 (40%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 TQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+  
Sbjct: 342 KDGMVGDMTDDQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ +D   G    DR++  QI   +L+NA+ FS  G  VIL   +
Sbjct: 402 LLIVREQAALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSQPGGWVILAVRQ 461

Query: 715 ------------------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                   +      SV + G  I +     +F  F        
Sbjct: 462 VPRSQAGVLEGDWPTYGFELPSSDNEHFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +  T     +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGTRFVVWLPIR 564


>gi|189425046|ref|YP_001952223.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421305|gb|ACD95703.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 767

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 175/405 (43%), Gaps = 20/405 (4%)

Query: 400 LHVIVTSNPRGGTIWMFEN--LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           + V +  N     + +  N  L              +     I++  + + +   +G+I 
Sbjct: 212 VRVQLAGNDEAKRLGLAVNAMLDALSQRAESLQQSEQRFRSMIENAGDAIYIHDHNGKIL 271

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            +N           + L       ++           +   L  A    F    K++  T
Sbjct: 272 SANQVCCCQTGYTLDELLMSP--VSLVDRQIDVQTLEEICRLATAAPARFPMTLKTVH-T 328

Query: 518 LELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            +  S   +E  +  LP   +   +    ++T+  RAE  L     A   A+  K+ F+ 
Sbjct: 329 RKDGSSFPVEVRLSLLPAGDDVHFVAMVRDITERKRAEDELLRAKAAAETANTTKSEFLA 388

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  +IG   LL+      L  +QS+Y+EYI A +  L++++ND+LD++ ++
Sbjct: 389 NMSHEIRTPMNGVIGNAQLLR---FTDLTEEQSRYLEYIEADAKHLVSVINDLLDISKIE 445

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG M+L  ++  L   +N++ + +  ++    +         +  +   D+ RL QI   
Sbjct: 446 AGKMELEQTSFSLRGCINDLLKPMTPRIATKGLIFNTEIANTVPDALTGDQLRLKQILRN 505

Query: 694 ILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           ++ NA+ F+ +GS + L+        +   F FSV + G  IP++  + +F  F      
Sbjct: 506 LVGNAIKFTDQGS-ITLRVELLEHSENKALFYFSVIDTGIGIPQEALERLFTPFTQADSS 564

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             R   G GLGLSI      L GG++S+ SS+   +  +  +P +
Sbjct: 565 VTRKFGGTGLGLSICNRLAGLMGGNISVESSEGAGSCFHVTLPFQ 609



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 25/203 (12%)

Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV------SKEITVNDQLTHTYEILHNLT 316
            E V  +E GN      +   +     G+A++        +  ++         ++ N  
Sbjct: 199 QEVVDQVETGNADVRVQLAGNDEAKRLGLAVNAMLDALSQRAESLQQSEQRFRSMIENAG 258

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            AI I D N  +   N+         L  L  +P    L++       L E     T   
Sbjct: 259 DAIYIHDHNGKILSANQVCCCQTGYTLDELLMSPV--SLVDRQIDVQTLEEICRLATAAP 316

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVT-----SNPRGGTIWMFENLTVQVDLETKY-- 429
             F +     T K      +G +  V V      +      + M  ++T +   E +   
Sbjct: 317 ARFPM-----TLKTVHTRKDGSSFPVEVRLSLLPAGDDVHFVAMVRDITERKRAEDELLR 371

Query: 430 -----NTLVKVQGETIDHLSEGV 447
                 T    + E + ++S  +
Sbjct: 372 AKAAAETANTTKSEFLANMSHEI 394



 Score = 38.0 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + + L   + + + L      F+ + ++    ++  D  G IL AN          G  
Sbjct: 228 AVNAMLDALSQRAESLQQSEQRFRSMIENAGDAIYIHDHNGKILSANQVC---CCQTGYT 284

Query: 233 FQKAIGESRKLFKEEIK--------KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
             + +     L   +I         +   ++ A      +TV T + G++   ++   L 
Sbjct: 285 LDELLMSPVSLVDRQIDVQTLEEICRLATAAPARFPMTLKTVHTRKDGSSFPVEVRLSLL 344

Query: 285 SFGE----AGIAIDVSKEITVNDQLTH 307
             G+      +  D+++     D+L  
Sbjct: 345 PAGDDVHFVAMVRDITERKRAEDELLR 371


>gi|20809032|ref|NP_624203.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517703|gb|AAM25807.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 577

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 88/399 (22%), Positives = 161/399 (40%), Gaps = 53/399 (13%)

Query: 400 LHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGP 452
           + + V S+   G +  MF  L+ ++       TL  +QGE       I  + +GV     
Sbjct: 218 IKINVKSDDEIGKLGEMFNFLSSRLK-----ETLNDIQGEKNKIEAIIKFMKDGVVAADA 272

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +G I   N A   +      +LS G  +  +              D              
Sbjct: 273 NGNIIHYNEAAEKMLN---KKLSLGMPVEEVLPLKEAENPIPMTCD-------------- 315

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                     + VL  +   +     +  +V V   +  +  L          D+++  F
Sbjct: 316 ----------NRVLMINAASVKINNQVEGYVYVMHDITEQHKL----------DQMRKEF 355

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           V +VS+ELR+PL  I  + + L  + + +  SK  +++  I   +  +  LV D+L L+ 
Sbjct: 356 VANVSHELRTPLATIKSYVETLLYNDVDTEYSK--KFLRIIETETDRMTRLVKDLLLLSK 413

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +D+    L       N+++  V  S++ +  +    + +     L     D+ ++ Q+  
Sbjct: 414 MDSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVDKDKVEQMAM 473

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            I++NA+ ++ +G  + +  A D     F+VK+NG  IP++    +F RF        R 
Sbjct: 474 NIINNAIKYTPEGGVIEISTAYDEEGVTFTVKDNGIGIPKEDLPRIFERFYRVDKARSRE 533

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGLSIV+  + LH G V I S     T +  ++P
Sbjct: 534 LGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLP 572


>gi|149174262|ref|ZP_01852889.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
 gi|148846807|gb|EDL61143.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
          Length = 2453

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 118/644 (18%), Positives = 241/644 (37%), Gaps = 41/644 (6%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
            +  E A        L    + F+ L D++    W  D+ G I W N  +    E  G   
Sbjct: 1662 VRLERAR---AEAALRESEARFRDLADNMSQFAWMADEKGFIFWYNQRW---FEYTGTTL 1715

Query: 234  QKAIGES-----RKLFKEEIKKRMISSSALEKNFCETVSTL-EHGNNKSY--KIVRVLNS 285
            ++  G            + + KR+  S    + + +T     + G  + +  + V + ++
Sbjct: 1716 EEMQGWGWKKVHHPEHVDRVVKRIQHSWDTGETWEDTFPIRSKEGEFRWFLSRAVPIRDA 1775

Query: 286  FG----EAGIAIDVSKEITVNDQLTHTYEILH------NLTVAIAIFDQNRYLQFHNRSF 335
             G      G   D++       ++  +   L       NL+  +  +D ++   + +   
Sbjct: 1776 SGKILRWFGTNTDITSTREQEQRVRASEARLRLAMQAANLS--LWQWDIDKDKIYWSHDS 1833

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             EL  ++         +   L        +   L         F     +   ++T+   
Sbjct: 1834 HELSSMEPRQAVGGLQHFLNLVHRNDREAVEHSLRSCLSNGKPFQAEFRTRKSENTYAWV 1893

Query: 396  NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
                     +++     + +  ++T +   E +     +      +    G+        
Sbjct: 1894 LSTAYLTTDSTDNSTVMVGVNLDITERKKSELEIKLSEERLRNAAESAGFGMLHIDLLEE 1953

Query: 456  IKLSNPAFRSLWKTE---ENRLSPGTHIRNIAATCSRYYNES--DGWDLFAAIITSFDDE 510
                +P  + +       EN L  G     I       Y +   +   L      S D  
Sbjct: 1954 TTAFSPEMKRMLGLPDNAENNLKFGEVPDWIHPKDRSAYRKHLQESAALPEGKNQSLDHR 2013

Query: 511  RKSLQGT---LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                 G    + L +  V           Q + T +++T   + E++L E  +    A+E
Sbjct: 2014 IIRPDGETRWVRLHARPVFTGKGSRRKATQLIGTLLDITSQRQFEQSLKEARQMAEAANE 2073

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K++F+ ++S+E+R+P+T I+G+ DL+       +    + Y+  +  +   LL+++NDI
Sbjct: 2074 SKSAFLANMSHEIRTPMTAIMGYIDLIDELIDHKI---ATAYLSTVRRNGEFLLDIINDI 2130

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
            LDL+ ++AG + +       + LL +V   +  +  EN + + +   GK+     +D +R
Sbjct: 2131 LDLSKIEAGKLDIIRERFSPHQLLEDVCSIMDVRAAENRLELDIFYYGKIPAEIESDPKR 2190

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            L QI   ++ NA+ F+ KGS V +  + ++    F + + G  I     K +F  F    
Sbjct: 2191 LKQILINLVGNAIKFTMKGS-VKIFVSCNDQQLQFIIVDTGIGITTRQQKRLFRPFSQGD 2249

Query: 747  HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            H   R   G GLGL+I +   N+ GG + + S  +  +     I
Sbjct: 2250 HTVNREFGGTGLGLAISQRLANMLGGEICVESEKDKGSKFTVTI 2293



 Score = 38.8 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 418  NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
            +++ +V +E  +           +   +G+      G +   NPA   L+  E   L  G
Sbjct: 1369 DISERVAVENLHKETAARLESMFNSAVDGMITINAAGNMDSINPAALDLFGYELEELQ-G 1427

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNA 536
             ++  +        ++S                ++ + G  +  S   +E ++       
Sbjct: 1428 QNVNMLMPDPWHSEHDSYLNAYLKTGQAKIIGSKREVLGLRKDGSTFAMELAVSEAYMRG 1487

Query: 537  QTMLTFVNVTDSVRAERALT 556
            + +        S R +R L 
Sbjct: 1488 EILFVGTVRDISERKQRELN 1507



 Score = 38.0 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 17/162 (10%)

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            + ++ W +     ++          LP+G  L            I M  ++T Q + +  
Sbjct: 901  VEYRLWHQQ--GEWRWMHARGVPQKLPDGSILR----------WIGMNTDITEQKEAQRV 948

Query: 429  YNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     ++  + G+A     +  I L+  A        +  L     + ++    
Sbjct: 949  ILESSRQLQLGVEIANLGLARVDYANNCITLTPEAAAIYGLGYQEILITRDEMLDLYHPE 1008

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             R     D  D   A I    D R  L+  L L S  +   S
Sbjct: 1009 DR----QDAADQIQACIQECGDGRCDLEHRLILPSGEIRWIS 1046


>gi|254488875|ref|ZP_05102080.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
 gi|214045744|gb|EEB86382.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
          Length = 723

 Score =  299 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 168/384 (43%), Gaps = 16/384 (4%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +LT       K     +   ++I+ + +G A F  +  + ++N A+ +++   E      
Sbjct: 66  DLTA---AREKIELTERRLWQSIETIKDGFAFFNANNEMIMANRAYLAIFDGLEIICPGV 122

Query: 478 THIRNIAATCSRYYNESDG--WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            ++  +          +       +  ++T    +       + L +   ++      P+
Sbjct: 123 NYVTILQVLTDEGIVNTGNLCPKSWRRLMTERLQDTAPEPTVIHLWNGQHIKLIDQRSPS 182

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +   +++T +V  ER L E +     A+  K++F+ ++S+E+R+P+  ++G  D+L+
Sbjct: 183 GDMVSLGLDITATVEYERQLQEAHSIAESANRAKSAFLANMSHEIRTPMNGVVGMADVLR 242

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    L   Q  YV+ I  S   LL ++ND+LD + ++A  + L+     L   + EV 
Sbjct: 243 DT---DLTEDQRLYVDTIKNSGEALLVIINDVLDYSKIEAKKLDLHPEPFDLERAIQEVI 299

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
             +     E  + + +  D  +  + V D  R+ Q+ + +L NA+ F+S G   V +   
Sbjct: 300 MLLQPLAREKGLEMALDYDLFMPTTLVGDPGRIRQVLTNLLGNAVKFTSDGHVLVRVTGV 359

Query: 714 RDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            D          ++++ G  I  DM   +F  F    +   R+  G GLGL+I +  I +
Sbjct: 360 PDKETGKVQVNIAIEDTGIGIAPDMVDHIFGEFNQVENERNRKFDGTGLGLAISQRLIQM 419

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
             G + ++S ++  +    ++P +
Sbjct: 420 MEGDIWVTSEEQAGSCFGFKLPLE 443



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            +    +       ++ +  +    A F+ N  +   NR+++ +++  L  +    +   
Sbjct: 68  TAAREKIELTERRLWQSIETIKDGFAFFNANNEMIMANRAYLAIFD-GLEIICPGVNYVT 126

Query: 355 LLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +L+ L     +    L  K+W+  +    + +       HL NGQ + +I   +P G  +
Sbjct: 127 ILQVLTDEGIVNTGNLCPKSWRRLMTERLQDTAPEPTVIHLWNGQHIKLIDQRSPSGDMV 186

Query: 414 WMFENLTVQVDLETKYNTLVKVQGET 439
            +  ++T  V+ E +      +    
Sbjct: 187 SLGLDITATVEYERQLQEAHSIAESA 212


>gi|330506779|ref|YP_004383207.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328927587|gb|AEB67389.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 1103

 Score =  299 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 155/399 (38%), Gaps = 39/399 (9%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  ++  E       +   + I+ L +   V   +G +   N A   + + +   +    
Sbjct: 426 VQERIQAEAAMRDSERRMADIINFLPDATFVINKEGVVIAWNRAIEMMTQVKAEDILGKG 485

Query: 479 HIR----------------------NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
                                    ++           DG     + I++ + +   LQG
Sbjct: 486 EYEYSLPFYKKRRPILIDLVTNQDLDVKGCYEELKWHEDGSLAGVSFISNLNGKLTYLQG 545

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +  +L DS  E +I        + +  ++TD    E  L    E    A   K++F+ ++
Sbjct: 546 SAAVLYDS--EGNIY-----GAIESIRDITDQKMVEEDLKNSKERAELATRSKSNFLANM 598

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  ++G T LL  +    L  +Q +Y+E I      LL ++N+ILD + ++  
Sbjct: 599 SHEIRTPMNAVVGMTGLLLET---DLKPEQREYLETIRTGGNTLLAIINNILDYSKIEGE 655

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKIL 695
            M+L      L   + E    +A    E  + I    D  +  F+  D+ RL QI   +L
Sbjct: 656 KMELEILPFDLLGCIEESMDMVAANAAEKGLEIAYFQDDDVPRFILGDQIRLRQILVNLL 715

Query: 696 SNAMDFSSKGSTVI-LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA  F+ KG  V+ L     +    +  F V + G  I ++    +F  F        R
Sbjct: 716 GNATKFTEKGEIVLSLSTTPLDDGRIELHFRVMDTGIGISQENLSRLFQFFTQVDSSTTR 775

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGL+I    + +  G + + S     +T +  I
Sbjct: 776 HYGGTGLGLAISRRLVEMMEGRIWVESEKGVGSTFHFTI 814


>gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 944

 Score =  299 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 158/381 (41%), Gaps = 19/381 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
               L  +    +      ++  ++G+ V     R+ + N      +   E  +   ++ 
Sbjct: 324 EHARLFEQLQIELDRAQAVVETTNDGIVVLDRQRRVVIINRRACYFFGITEADIKEKSY- 382

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            ++    SR +  S     +   +   + +R   +  +       L     P+ N +   
Sbjct: 383 DDLLLVFSRVFANSVRLGFWLGQLLGSETDRGWEEFQVVYPKSRRLHCFSAPVINRR--- 439

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL------ 594
                 +       +       R+ + +K+ F+  VS+ELR+PL++I G   L+      
Sbjct: 440 ------EQYLGRILIFRDVTREREIERLKDEFISIVSHELRTPLSSIQGSLQLVLGDDER 493

Query: 595 -KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            KT     L  +    ++    ++  L+ LVNDILD+  ++ G ++L    +    +   
Sbjct: 494 GKTGLGDRLPPQVRTMLQISLNNTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRS 553

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + + +   ++ + I +     L    AD+ R++Q+   +LSNA+ FSSKG  V+L   
Sbjct: 554 AVEELTSFARQHGVTIALDVPPNLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVV 613

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
            +     FSV++ G  IP    + +F +F     A+  +R G GLGL+I +  + LHGG 
Sbjct: 614 YETSVVRFSVRDWGPGIPHTDQQFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGK 673

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S     +  N  +P  +
Sbjct: 674 IWVQSEPGQGSIFNFTLPLAK 694



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 9/146 (6%)

Query: 288 EAGIAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           + GIA++ ++    +  +L     ++      I + D+ R +   NR     + I  A +
Sbjct: 318 QIGIAVEHARLFEQLQIELDRAQAVVETTNDGIVVLDRQRRVVIINRRACYFFGITEADI 377

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----- 401
                +D LL F R        +    W   +          +     P  + LH     
Sbjct: 378 KEKSYDDLLLVFSR---VFANSVRLGFWLGQLLGSETDRGWEEFQVVYPKSRRLHCFSAP 434

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLET 427
           VI       G I +F ++T + ++E 
Sbjct: 435 VINRREQYLGRILIFRDVTREREIER 460


>gi|209525380|ref|ZP_03273921.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494231|gb|EDZ94545.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 625

 Score =  299 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 11/292 (3%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           + E+K +    + LS ++ +  +      Q       V +  +A   L +   A + A+ 
Sbjct: 189 ESEQKFISKITQHLSIAIYQAQLYAQVQQQKQTLERRVKERTQA---LHDALLAAQCANR 245

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN------SKQSQYVEYISASSTILL 621
            K+ F+  +S+ELR+PLT++IG +  L        N       KQ  Y++ I  S   LL
Sbjct: 246 AKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPDNFPALPLEKQKHYLQTIHDSGENLL 305

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILDL+ V++G   L +S   L  L  +   ++     E  + + +        F 
Sbjct: 306 ALINDILDLSQVESGKTVLKFSEFSLQKLAQQCLHTLRDFAKEKGVNVNLQIKVDQDLFR 365

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +R+ QI   +LSNA+ F+ KG  V L  +R +   IF VK+ G  I ++    +F +
Sbjct: 366 ADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSRKDKTAIFQVKDTGIGISKEQQSLLFEK 425

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F       R Q  G GLGL++ +  + LHGG +   S     T     IP +
Sbjct: 426 FQQLDSPYRRQYGGTGLGLALTKQLVELHGGSIQFESEVGLGTKFTVYIPIQ 477


>gi|299145530|ref|ZP_07038598.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298516021|gb|EFI39902.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 810

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 117/606 (19%), Positives = 243/606 (40%), Gaps = 49/606 (8%)

Query: 216 LWANISYKKNTE----TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            W N    +       T   + ++A    + L  ++IK  M+     ++     +     
Sbjct: 217 TWWNHQIAERRAIILNTLDDMPEEAAEYRQTLEIQDIKSLMVVPLISKEEVWGYMGIDMV 276

Query: 272 GNNKSYKIVRV-----LNSFGEAGIAIDVSKEITVNDQL------THTYEILHNLTVAIA 320
              +S+  V       L +     I +  S+     D+L           I  NL   + 
Sbjct: 277 RTQRSWSNVDYQCFSSLANIISICIELRKSELQAKEDRLALDNSEKILRNIYKNLPAGVE 336

Query: 321 IFDQNRYLQFHNRSFVELWEID------LAFLATNPSN-DELLEFLRSANKLPEQLNWKT 373
           ++D++ YL   N   +E++ +          L  NP+   E+ E LR+   +   +++  
Sbjct: 337 LYDKDGYLVDINDKELEIFGLSDKNEALRVNLFDNPNIPSEIKEKLRAKEDVDFSIDYDF 396

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            K + +   + +     T      +   +  + N     +++  ++T   +  TK     
Sbjct: 397 SKISQYVNTRRNGIINLTT-----KVTALYDSQNQFINYLFINIDMTETTNAYTKIQEFE 451

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            +     D+   G A F       L+   +             G  +  +    +    E
Sbjct: 452 NLFLLIGDYAKVGFAHFN-----VLTRDGYAQDTWYRNLGEKEGIPMPQVIGVYAHVVPE 506

Query: 494 SDGW------DLFAAIITSFDDE----RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                     ++     TS   E    R++ + T   ++  V +Y        + +    
Sbjct: 507 DQAVLKNFVGEVKTGKATSLRKEVRVCRENGKYTWTSINVMVRDYRPQD-GIIEMLCINY 565

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E+ L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +   +  
Sbjct: 566 DITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDSRN-- 623

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y++ +  ++ +LL L++DILDL+ ++AG     Y+ + +N+   E+ +S++ K+ 
Sbjct: 624 -ERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMKV- 681

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +             D+ R  Q+ S  ++NA+ F+ +GS  +      +    F V
Sbjct: 682 SKGVELIFEEPFPECYIYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYV 741

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++ G  IPE+  KSVF RFV      Q  G GLGLSI +S ++  GG + + S++   + 
Sbjct: 742 RDTGMGIPEEKQKSVFERFVKLNTFVQ--GTGLGLSICKSIVSQMGGEIGVDSTEGIGSC 799

Query: 784 INCRIP 789
                P
Sbjct: 800 FWFTHP 805


>gi|170079099|ref|YP_001735737.1| two-component hybrid sensor kinase/response regulator [Synechococcus
            sp. PCC 7002]
 gi|169886768|gb|ACB00482.1| two-component hybrid sensor and regulator (His Kinase A domain
            protein) [Synechococcus sp. PCC 7002]
          Length = 1427

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 113/600 (18%), Positives = 222/600 (37%), Gaps = 40/600 (6%)

Query: 218  ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHG 272
             N ++ +  +    +          LF    +KR+        N       E ++  ++G
Sbjct: 835  VNPAFLELFDYPHRLSLTGHSWKEVLFAPSEQKRLEKDILPHLNRHKSWQGEAIAQRQNG 894

Query: 273  NNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNR- 326
               + +I   + S G+   +  D++       ++  T  +L     N  +    +   + 
Sbjct: 895  QIFTQEISLTITSDGDYICVCRDITARNRAALKIRETEALLRSQYRNFPIPTYTWQHRQG 954

Query: 327  --YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              YL  +N +     +  L      PS+            +    ++KT  E    +   
Sbjct: 955  NFYLIDYNSAAEIANDGSLQDFLHCPSHAIYGADHAIHQNIRRCFDFKTTFEEALQIPSP 1014

Query: 385  SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
             +      +      L   +   P    +   ++LT +   E             ID+  
Sbjct: 1015 DDPEAFQRYF-----LATYIYIQPDLVMVHT-QDLTERKRAERDLQQSQTFLRLVIDNNP 1068

Query: 445  EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
              + V   DGR  L N A  + + T  N L        +       + +S+  D F    
Sbjct: 1069 NLIFVKDKDGRFLLVNQAMANFYGTTVNEL--------VGKRECDLHPDSEEADCFIQAD 1120

Query: 505  TSFDDERKSL-----QGTLELLSDSVLEYSIIPL------PNAQTMLTFVNVTDSVRAER 553
                 E+K +     + T  L +        +PL      P  Q +     +T   RA+R
Sbjct: 1121 QQVLREQKIVVIDEAKATDFLGATRYFRTVKLPLQLPGDHPQYQVLGVASEITQQRRAKR 1180

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L +     R+ + +K  F+   S+E R+PLT I+G   +L         +++SQY+  I
Sbjct: 1181 ELEKALTQERELNHLKTRFIDTASHEFRTPLTVILGAAQILSAYHDHLPEARRSQYLNNI 1240

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S   L  L++D+L ++ ++AG +      + +  L  ++   +   +        + +
Sbjct: 1241 EDSVMRLRQLIDDLLTMSRLEAGKLGCQRQAVDIVTLCRDLIAELKIGI-GKQHHFNLET 1299

Query: 674  DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             G + + +A D   L  I + +L NA  +S+ G+TV ++          ++ + G  IP 
Sbjct: 1300 TGAIAAPLALDPNLLQHILNNLLGNACKYSAPGTTVTVQLGSSAEALTLTIIDQGVGIPP 1359

Query: 733  DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +    +F  F   ++     G GLGL+IV+ ++ LHGG + ++S     +     IP  E
Sbjct: 1360 EDQPHIFESFYRASNTQNIPGTGLGLNIVKEYVQLHGGQIELTSQLSKGSQFTVTIPLTE 1419



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/432 (14%), Positives = 129/432 (29%), Gaps = 57/432 (13%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TET 228
            + +E+ +  L   +L       + LFD    L    ++ G I+  N + ++      TE 
Sbjct: 643  LNTEIQQRKLTEMELRQEQDFLETLFDLTPALFMVLNREGRIIRFNPACEQLTGYQFTEV 702

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV--RVLNSF 286
                    +   R    E +++        +    E     + G     +     +L+  
Sbjct: 703  AHQYLWDLLLWDRYDVAEIVQEFQRLLQQKKPRTYEVDWRAKSGKVHHLRWSHGVLLDKQ 762

Query: 287  GEAGIAIDVSKEITVNDQLTHTYEILHN-LTVAI-----AIFDQNRYL------------ 328
            G     I    +++       T + L+  L   +      + +  + L            
Sbjct: 763  GNVHYVIATGMDMSDRQAFETTLKTLNQELEFRVEQRTRVLENIEQNLRRQLAAVDAAVD 822

Query: 329  ----------QFHNRSFVELWEIDLAFLATNPSNDELL----EFLR-SANKLPEQLNWKT 373
                         N +F+EL++       T  S  E+L    E  R   + LP     K+
Sbjct: 823  AIAILQREEFISVNPAFLELFDYPHRLSLTGHSWKEVLFAPSEQKRLEKDILPHLNRHKS 882

Query: 374  WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            W+    +  ++ +            T  + +T    G  I +  ++T +     K     
Sbjct: 883  WQGEAIAQRQNGQIF----------TQEISLTITSDGDYICVCRDITARNRAALKIRETE 932

Query: 434  KVQGETIDHLSEGVAVF-GPDGRIKLS--NPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             +      +       +    G   L   N A        +  L    H  + A   + +
Sbjct: 933  ALLRSQYRNFPIPTYTWQHRQGNFYLIDYNSAAEI---ANDGSLQDFLHCPSHAIYGADH 989

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                +    F    T+F++  +                + I +     M+   ++T+  R
Sbjct: 990  AIHQNIRRCF-DFKTTFEEALQIPSPDDPEAFQRYFLATYIYIQPDLVMVHTQDLTERKR 1048

Query: 551  AERALTEKNEAL 562
            AER L +    L
Sbjct: 1049 AERDLQQSQTFL 1060



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 8/174 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
             +   +  +   E +            D       V   +GRI   NPA   L   +  
Sbjct: 641 ATLNTEIQQRKLTEMELRQEQDFLETLFDLTPALFMVLNREGRIIRFNPACEQLTGYQFT 700

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            ++       +       Y+ ++    F  ++         +    +      L +S   
Sbjct: 701 EVAHQYLWDLL---LWDRYDVAEIVQEFQRLLQQKKPRTYEVDWRAKSGKVHHLRWSHGV 757

Query: 533 LPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           L + Q      + T ++++D    E  L   N+ L    E +   ++++   LR
Sbjct: 758 LLDKQGNVHYVIATGMDMSDRQAFETTLKTLNQELEFRVEQRTRVLENIEQNLR 811



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 56/158 (35%), Gaps = 21/158 (13%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
             +L E     + L    +  +++ D+   L++ +D+ G  L  N +        G    +
Sbjct: 1041 QDLTERKRAERDLQQSQTFLRLVIDNNPNLIFVKDKDGRFLLVNQA---MANFYGTTVNE 1097

Query: 236  AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH--------GNNKSYKIVRVLN--- 284
             +G+       + ++      A ++   E    +          G  + ++ V++     
Sbjct: 1098 LVGKRECDLHPDSEEADCFIQADQQVLREQKIVVIDEAKATDFLGATRYFRTVKLPLQLP 1157

Query: 285  ----SFGEAGIAIDVSKEITVNDQLTH---TYEILHNL 315
                 +   G+A +++++     +L         L++L
Sbjct: 1158 GDHPQYQVLGVASEITQQRRAKRELEKALTQERELNHL 1195



 Score = 42.6 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 91/303 (30%), Gaps = 45/303 (14%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-------P 350
           E+ +  +      +         + ++   +   N +  +L       +A          
Sbjct: 654 EMELRQEQDFLETLFDLTPALFMVLNREGRIIRFNPACEQLTGYQFTEVAHQYLWDLLLW 713

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              ++ E ++   +L +Q   +T+   +    KS + H   W   +G  L      +   
Sbjct: 714 DRYDVAEIVQEFQRLLQQKKPRTY--EVDWRAKSGKVHHLRWS--HGVLLDKQGNVH--- 766

Query: 411 GTIWMFENLTVQVDLETKYNTL-------VKVQGETIDHLSEGV-------------AVF 450
             I    +++ +   ET   TL       V+ +   ++++ + +                
Sbjct: 767 YVIATGMDMSDRQAFETTLKTLNQELEFRVEQRTRVLENIEQNLRRQLAAVDAAVDAIAI 826

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                    NPAF  L+         G   + +       +  S+   L   I+   +  
Sbjct: 827 LQREEFISVNPAFLELFDYPHRLSLTGHSWKEV------LFAPSEQKRLEKDILPHLNRH 880

Query: 511 RKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           +      +    +  +   E S+    +   +    ++T   RA  AL  +        +
Sbjct: 881 KSWQGEAIAQRQNGQIFTQEISLTITSDGDYICVCRDITARNRA--ALKIRETEALLRSQ 938

Query: 568 IKN 570
            +N
Sbjct: 939 YRN 941


>gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 1206

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 102/523 (19%), Positives = 202/523 (38%), Gaps = 53/523 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +    +    I+     AI + D    +Q  N +   ++      +        +   
Sbjct: 318 QNLQKSESRLRAIIETAADAIVMIDTRGIIQEFNVTAERMFGWTAKEIIGKNVKILMPSP 377

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV----TSNPRGGT-I 413
            R  +         T +  I  + + +   +      +G T  + +    T  P+    +
Sbjct: 378 FREEHDGYLSNYLTTGEAKIIGIGRETIALR-----KDGTTFPIRLAIGHTKLPQNDIFV 432

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  +++ ++ +E       +     I ++  GV               +R L     + 
Sbjct: 433 GLISDISERILIEHALKDNEEQLRSFIQNIP-GVV--------------YRCLIDEYWSS 477

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSII 531
           +     I  I+   S+ + E +    F+ II   D E  S  +Q  ++     VL Y I+
Sbjct: 478 VFLSDAIFQISGYPSKDFLEPNRIRNFSDIIHPDDREHVSNIIQNAIDTSDTFVLNYRIV 537

Query: 532 --------------PLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                         P+ +    +       ++ TD    E AL E  E    A   K++F
Sbjct: 538 HKNGEIRWVLEYGGPVYDENNEVKFLDGVILDNTDRRMIEEALIESKEKAEMASITKSTF 597

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  IIGFT++L +    + N K   ++E I  S+  LL L+ND+L+ A 
Sbjct: 598 LANMSHEIRTPMNAIIGFTEVLLSDPNPNQNKK---HLETIRNSAKSLLRLLNDVLNSAK 654

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           +D G ++L      L  L+++V  +   +     +        +L  +   D  R+ QI 
Sbjct: 655 LDRGALELESVDFSLISLVDQVSSTFIMEAKRKGLEFLTHYSNELEDYYRGDSLRIRQIL 714

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
           + ++ NA+ F+ +G  + L      G  +F +++ G  I ED  + +F  F         
Sbjct: 715 TNLIGNAIKFTKQG-KIELFITPHKGQVLFHIQDTGIGIAEDRMEKIFEPFTQADVSMSR 773

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  G GLG +I +  + L GG + + S     T     +P  +
Sbjct: 774 KFGGTGLGTTISKQLVELMGGKIWLESKLGVGTNFYFSLPLPK 816


>gi|89070245|ref|ZP_01157569.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus
           HTCC2516]
 gi|89044165|gb|EAR50323.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus
           HTCC2516]
          Length = 1053

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 119/646 (18%), Positives = 235/646 (36%), Gaps = 59/646 (9%)

Query: 174 IYSELAETTL---KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
              E+A   L   + ++L     + +   D+    +   D  G +L  N +  +      
Sbjct: 315 ARREIAVRRLVEERTRELEARAEMNRSFLDNRVVAMLIVDADGSVLSGNQAAARL----- 369

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
                  G +    K  +   +I  +    ++  + +   H +  +  +   +N +  AG
Sbjct: 370 ------FGYAVSDLKGVLLNNLIPGAIASIDWTLSTTQGVHRDGSTLYLDVQVNRWTNAG 423

Query: 291 -------IAIDVSKEITVNDQLTHTYEILHNLTV--AIAIFDQN--RYLQFHNRSFVELW 339
                  +  DVS++   + QL    E  +       I +FD +    +   + S++ + 
Sbjct: 424 DNARSTVLIRDVSEQTRTSRQLDEQEERFNRAINEAGIGVFDIDLESDVSVVSNSWLRVM 483

Query: 340 EIDLAFLATNPSNDELLEFLRSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            +       NP      E +   ++ + E  N+     +            D       +
Sbjct: 484 GLPADVTLENPQ-ALFRERVHPEDRPIIEAANYAHIDGHTDRTVTEYRVRFDDGTWRWMR 542

Query: 399 TLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +  V+   +  G  + +     ++T + + +       +   + +     G+A+F   GR
Sbjct: 543 SNAVVTERDEDGRALRLLGVQTDVTDRHEAQDALRRSEERFRKFLAQAPVGMAIFDGQGR 602

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
               N A   L    E  L        +        ++ D   +F  ++ +  D  +   
Sbjct: 603 FLGLNEAMVKLTGYSEAEL--------LEMRFGDLLSKDDLAQIFDTVVETHGDGARGYT 654

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-------ALTEKNEALRKADEI 568
           G  +L              N   +   ++V  +  A+R        L + +E  R+ + +
Sbjct: 655 GEHQLSH-----------RNGGHVWALLSVAWTFDADRGSDLYIVQLQDISER-REIERL 702

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ FV  VS+ELR+PLT++ G  DL+  +    L     + ++   +++  L+ LVNDIL
Sbjct: 703 KSEFVATVSHELRTPLTSVKGALDLVVGAMADKLPKSSLRLLDIAQSNTDRLIYLVNDIL 762

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL  + AG +  +      N+LL+   +       + ++ +           +AD  RL 
Sbjct: 763 DLEKISAGQIDFHIQPESANELLDASVKQTRPIAVQQDVHLVWRPQEPDRMVLADAGRLN 822

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   ++SNA  FS  G  V +       + +F VK+ G  I      S+F  F      
Sbjct: 823 QVLLNLISNACKFSHAGGRVEVWFEVRGAEVMFFVKDEGVGISATHRNSIFKPFSQVDSS 882

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             R   G GLGL+I +  +    G +   S+    TT     P  E
Sbjct: 883 DTREKGGTGLGLNICKELVERMNGRIDFESTLGEGTTFRFTCPLAE 928


>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 949

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 157/395 (39%), Gaps = 31/395 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
              +   K     +     I++    +  F  +  + L+N    SL+  E++++      
Sbjct: 130 DNKEFAEKIRESEERYRALIENAGSAILFFDANDNVILANEVAASLFGMEKDKVEGMGIR 189

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             + +  +  + +     L   +   ++D      G     S ++   S           
Sbjct: 190 DFMPSEDAARFTKRFHAILEKGVGGIYEDWVTLPGGQKRCFSSNIHPISRSDGHIMGFQC 249

Query: 541 TFVNVTDSVRAERALTEKNEALRKADE---------------------IKNSFVQHVSYE 579
             +++T     E+AL    E    A+                       K+ F+ ++S+E
Sbjct: 250 ILLDITRQKEVEQALRRAKEETEDANRQLEMIIEDSNRLAVQADLANMAKSEFLANMSHE 309

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++G   LL  ++   L  +Q +Y E +  S+  LL ++NDILD + ++AG + 
Sbjct: 310 IRTPMNGVVGMISLLLETE---LTREQKEYAETVRNSAHSLLEIINDILDFSKIEAGKLD 366

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
           L      L + L E    +A +  E  +    I D  +      D  RL QI   + +NA
Sbjct: 367 LEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFRLKGDPVRLRQIVLNLANNA 426

Query: 699 MDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           + F+++GS T+ ++  +   D +   FSV + G  +     +S+F+ F        R   
Sbjct: 427 VKFTAQGSITIRVELLKQAPDLLALKFSVTDTGIGVAPSRQQSLFDAFTQAEASTTRNYG 486

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           G GLGL+I +    +  G + + S +   +T    
Sbjct: 487 GTGLGLAISKKLAQMMKGRIGLESEEGKGSTFWFT 521



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 80/243 (32%), Gaps = 26/243 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
              + +       ++ N   AI  FD N  +   N     L+ ++            + +
Sbjct: 135 AEKIRESEERYRALIENAGSAILFFDANDNVILANEVAASLFGMEKD----KVEGMGIRD 190

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKS--SETHKDTWHLPNGQTLHVIVTSNP---RGGT 412
           F+ S        +   + +   ++ +      ++D   LP GQ        +P     G 
Sbjct: 191 FMPSE-------DAARFTKRFHAILEKGVGGIYEDWVTLPGGQKRCFSSNIHPISRSDGH 243

Query: 413 IWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           I  F+    ++T Q ++E       +   ET D   +   +     R+ +   A  +   
Sbjct: 244 IMGFQCILLDITRQKEVEQALRRAKE---ETEDANRQLEMIIEDSNRLAV--QADLANMA 298

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E   +    IR          +     +L        +  R S    LE+++D +L++
Sbjct: 299 KSEFLANMSHEIRTPMNGVVGMISLLLETELTREQKEYAETVRNSAHSLLEIIND-ILDF 357

Query: 529 SII 531
           S I
Sbjct: 358 SKI 360



 Score = 38.8 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 22/167 (13%)

Query: 177 ELAETTLKCK----KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           E A  T   K    K+      ++ L ++    +   D   +++ AN         E   
Sbjct: 123 EKARLTRDNKEFAEKIRESEERYRALIENAGSAILFFDANDNVILANEVAASLFGMEKDK 182

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNF---CETVSTLEHGNNKSY--KIVRVLNSFG 287
            +          ++  +      + LEK      E   TL  G  + +   I  +  S G
Sbjct: 183 VEGMGIRDFMPSEDAARFTKRFHAILEKGVGGIYEDWVTLPGGQKRCFSSNIHPISRSDG 242

Query: 288 E----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
                  I +D++++  V   L    E            D NR L+ 
Sbjct: 243 HIMGFQCILLDITRQKEVEQALRRAKEETE---------DANRQLEM 280


>gi|237716423|ref|ZP_04546904.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408024|ref|ZP_06084572.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294643626|ref|ZP_06721428.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294808045|ref|ZP_06766818.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229444070|gb|EEO49861.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354832|gb|EEZ03924.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292641003|gb|EFF59219.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294444686|gb|EFG13380.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 810

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 120/606 (19%), Positives = 245/606 (40%), Gaps = 49/606 (8%)

Query: 216 LWANISYKKNTE----TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            W N    +       T   + ++A    + L  ++IK  M+     ++     +     
Sbjct: 217 TWWNHQIAERRAIILNTLDDMPEEAAEYRQTLEMQDIKSLMVVPLISKEEVWGYMGIDMV 276

Query: 272 GNNKSYKIVRV-----LNSFGEAGIAIDVSKEITVNDQL------THTYEILHNLTVAIA 320
              +S+  V       L +     I +  S+     D+L           I  NL   + 
Sbjct: 277 RTQRSWSNVDYQCFSSLANIISICIELRKSELQAKEDRLALDNSEKILRNIYKNLPAGVE 336

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAF------LATNPSN-DELLEFLRSANKLPEQLNWKT 373
           ++D++ YL   N   +E++ +          L  NP+   E+ E LR+   +   +N+  
Sbjct: 337 LYDKDGYLVDINDKELEIFGLSDKNEALGVNLFDNPNIPSEVKERLRAKEDVNFSINYDF 396

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            K N     +  ++ ++     N +   +  + N     +++  + T   +  TK     
Sbjct: 397 SKIN-----QYVDSRRNGIINLNTKVTALYDSQNRFINYLFINIDTTETTNAYTKIQEFE 451

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            +     D+   G A F       L+   +             G  +  +    +    E
Sbjct: 452 NLFLLIGDYAKVGFAHFN-----VLTRDGYAQDTWYRNLGEKEGIPMPQVIGVYAHVVPE 506

Query: 494 SDGW------DLFAAIITSFDDE----RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                     ++     TS   E    R++ + T   ++  V +Y        + +    
Sbjct: 507 DQAVLKNFVGEVKTGKATSLRKEVRVCRENGKYTWTSINVMVRDYRPQD-GIIEMLCINY 565

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E+ L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +      
Sbjct: 566 DITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET---DSR 622

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S++ +Y++ +  ++ +LL L++DILDL+ ++AG     Y+ + +N+  +E+ +S+  K+ 
Sbjct: 623 SERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMKV- 681

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + + +           D+ R  Q+ S  ++NA+ F+ +GS  +      +    F V
Sbjct: 682 GKGVELILEEPFPECYIYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYV 741

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++ G  IPE+  KSVF RFV      Q  G GLGLSI +S ++  GG + + S++   + 
Sbjct: 742 RDTGMGIPEEKQKSVFERFVKLNTFVQ--GTGLGLSICKSIVSQMGGEIGVDSTEGIGSC 799

Query: 784 INCRIP 789
                P
Sbjct: 800 FWFTHP 805


>gi|327440829|dbj|BAK17194.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 592

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 169/412 (41%), Gaps = 38/412 (9%)

Query: 388 HKDTWHLPNGQT-LHVIVTSNPRGGTIWM-FENLTVQVD--LETKYNTLVKVQGETIDHL 443
            +  + L  G+    +    N   G + + F  +  Q+   LE   N   +     +  +
Sbjct: 209 REHAFELAKGRFDSKIETKQNDEIGQLAVAFNQMGRQLKHHLEV-INQEKEQLSSILTSM 267

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           ++ V  F  D  I +SNP    L +    E  L     I +        Y   D      
Sbjct: 268 TDSVITFNRDKTILVSNPPAERLLQKWFVEKGLDSSKPIPD------ELYQMLDH----- 316

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             + +F+D+   L    E +  S    +I PL +           DS+R   A+      
Sbjct: 317 --VLNFEDQ---LDEEFE-MGKSYYSITISPLYS----------RDSIRGAVAVIRDKTE 360

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +++K+ F+ +VS+ELR+P+  + G+++ +    + +   ++   +  I   S  + 
Sbjct: 361 ETKLEKLKSDFIANVSHELRTPIAMLQGYSEAIIDGVV-TTEEERIDMIRVIYDESQRMS 419

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSF 680
            LV D+LDLA +++G M L    + L  ++  +         E ++++++ +D       
Sbjct: 420 RLVTDLLDLARMESGHMTLYKEEVPLVTVIERMTHKFDQTAKEKHVQLQIETDFSDETLI 479

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  R+ Q+ + ++ NA+  +    +V +    +       V + G  IP+D    VF 
Sbjct: 480 SIDEDRIEQVLTNLIDNAIRHTPADGSVTVSMINEQNYAKIQVSDTGQGIPQDDLPYVFE 539

Query: 741 RFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF          + G GLGL+I ++ +  H G +S+ S ++  TT    +P 
Sbjct: 540 RFYKADKARTRSKGGTGLGLAITKNIVEAHNGRISVDSVEQQGTTFTFYLPL 591



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 83/239 (34%), Gaps = 31/239 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEIDLAFLATNPSNDEL 355
             +N +      IL ++T ++  F++++ +   N     L   W ++    ++ P  DEL
Sbjct: 251 EVINQEKEQLSSILTSMTDSVITFNRDKTILVSNPPAERLLQKWFVEKGLDSSKPIPDEL 310

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            + L         LN++   +  F + KS  +           T+  + + +   G + +
Sbjct: 311 YQMLDH------VLNFEDQLDEEFEMGKSYYSI----------TISPLYSRDSIRGAVAV 354

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             + T +  LE            +  T + +     + + +GV V   + RI +    + 
Sbjct: 355 IRDKTEETKLEKLKSDFIANVSHELRTPIAMLQGYSEAIIDGV-VTTEEERIDMIRVIYD 413

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
              +            R  +   + Y  E     +   +   FD   K     L++ +D
Sbjct: 414 ESQRMSRLVTDLLDLARMESGHMTLYKEEVPLVTVIERMTHKFDQTAKEKHVQLQIETD 472


>gi|197106142|ref|YP_002131519.1| sensor histidine kinase (non-motile and phage-resistance protein )
           [Phenylobacterium zucineum HLK1]
 gi|196479562|gb|ACG79090.1| sensor histidine kinase (non-motile and phage-resistance protein )
           [Phenylobacterium zucineum HLK1]
          Length = 621

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 93/432 (21%), Positives = 179/432 (41%), Gaps = 33/432 (7%)

Query: 393 HLPNGQTLHVIVTSN-----PRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            L  G+ + +          P GG    I +  ++T +   + +         + I+ +S
Sbjct: 175 SLAGGRPIWIDARGRGFGEAPEGGYARIIGVALDVTEERLAQARAQQAESRLRDAIESVS 234

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS---RYYNESDGWDLFA 501
           E   ++   GR+ + N  +R  +K E   L  G     +        R    + G     
Sbjct: 235 EAFVLWDRHGRLLMCNRNYRDYFKLESGLLLAGVGREQVERAARMAVRQEYPAPGDRRGV 294

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                 D     +          V+  + I +  AQ     +   +  RA   L    E 
Sbjct: 295 REAELADGRWVQISERPTAEGGLVVTAADITVLKAQEEARRLKEEELRRAVFNLERSQEQ 354

Query: 562 LRK--------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQ 606
           L +              A + K+ F+ ++S+ELR+PL  I GF++++     G L +++ 
Sbjct: 355 LSELARKYEAEKIRAEGASQAKSEFLANMSHELRTPLNAINGFSEIMVAEMYGPLGDARY 414

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y   I  S   LL L+NDILD++ ++AG M L +    L ++  +  + +  +     
Sbjct: 415 RDYARDILNSGQHLLALINDILDMSKIEAGKMSLRFDPCSLEEIAEDALRLVRNRAESAG 474

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFS 722
           + + +    +L    AD + + Q+   +LSNA+ F+ +G  + L+A R +         S
Sbjct: 475 LTLVLDF-VELPEVEADYRAVKQVLLNLLSNAIKFTPRGGRITLRAERRDDPLGQRVRVS 533

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  +  + +   F      H   ++G GLGL++ ++F+ LHGG + + S+   
Sbjct: 534 VQDTGIGIAPEDLERLARPFEQVESQHAKTQQGTGLGLALTKAFVELHGGLLDLKSAPGQ 593

Query: 781 VTTINCRIPSKE 792
            TT +  +P ++
Sbjct: 594 GTTASFSLPVRQ 605



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 102/285 (35%), Gaps = 35/285 (12%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG--IVFQ 234
           E           S+    F++  ++    +W  D A D ++ +          G  +  Q
Sbjct: 81  ESLRVERAHAAFSDSEQRFRMAVEAARCGIWEWDLAADKIFMSEVTAALFGWRGGVVDGQ 140

Query: 235 KAIGESRKLFKEEIKKRMISSSALEK-NFCETVSTLEHGNNKSYKIVRVLNSFGEA---- 289
           + +       ++ +++ + +++     +    V +L  G  +   I      FGEA    
Sbjct: 141 QVLDRVSPGHRDGLREALANAAIYGDFDVSFRVPSLAGG--RPIWIDARGRGFGEAPEGG 198

Query: 290 -----GIAIDVSKE----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
                G+A+DV++E           +   + + +++ A  ++D++  L   NR++ + ++
Sbjct: 199 YARIIGVALDVTEERLAQARAQQAESRLRDAIESVSEAFVLWDRHGRLLMCNRNYRDYFK 258

Query: 341 IDLAFLATNPSNDELLEFLRSA--NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           ++   L      +++    R A   + P   + +  +E                 L +G+
Sbjct: 259 LESGLLLAGVGREQVERAARMAVRQEYPAPGDRRGVREA---------------ELADGR 303

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            + +       GG +    ++TV    E       +     + +L
Sbjct: 304 WVQISERPTAEGGLVVTAADITVLKAQEEARRLKEEELRRAVFNL 348



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 95/308 (30%), Gaps = 26/308 (8%)

Query: 27  FGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW 86
              IA  LL  I   +LL+ +    + +V   ++  S+      ++   +    C    W
Sbjct: 61  LAWIAAPLLVAIGLGVLLLVE----SLRVERAHAAFSDSEQ---RFRMAVEAARCGIWEW 113

Query: 87  DGKDET---PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ---S 140
           D   +     E+   L            +L   + +   H   L +A       G    S
Sbjct: 114 DLAADKIFMSEVTAALFGWRGGVVDGQQVL---DRVSPGHRDGLREALANAAIYGDFDVS 170

Query: 141 FDL-VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199
           F +          I   GR  G         + G+  ++ E  L   +     S  +   
Sbjct: 171 FRVPSLAGGRPIWIDARGRGFGEAPEGGYARIIGVALDVTEERLAQARAQQAESRLRDAI 230

Query: 200 DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE 259
           +S+       D+ G +L  N +Y+   + E  +    +G   +  +   +  +       
Sbjct: 231 ESVSEAFVLWDRHGRLLMCNRNYRDYFKLESGLLLAGVGR--EQVERAARMAVRQEYPAP 288

Query: 260 KNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
            +    V   E  + +  +I  R     G    A D++      +      E L      
Sbjct: 289 GDRRG-VREAELADGRWVQISERPTAEGGLVVTAADITVLKAQEEARRLKEEELRR---- 343

Query: 319 IAIFDQNR 326
            A+F+  R
Sbjct: 344 -AVFNLER 350


>gi|16331796|ref|NP_442524.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001756|dbj|BAA10594.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 806

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 99/393 (25%), Positives = 175/393 (44%), Gaps = 29/393 (7%)

Query: 419 LTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +  +  LE      V++ Q   +   +  V V+    +I      +  +       L   
Sbjct: 265 IYQREALEIAERKYVEIAQRYELASQATRVWVWECQPKI-----HYFEVDPNLITWLGFE 319

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +    A    + +  D    + AI  S +D    L   L L + +   Y  +      
Sbjct: 320 QPLE--PADGDFFIHLGDRPMFWQAIEQSLEDPTMELSTELRLEAANGEIYHCLLRGQIH 377

Query: 538 ---------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     + T  ++T+  +AE  L   N+ L KA ++K+ F+ ++S+ELR+PL +I+
Sbjct: 378 QEQGEAFVKIIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSIL 437

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  + L+    G LN KQ Q +E +  S   LL+L+NDILDL+ ++AG M L+ +   ++
Sbjct: 438 GMIETLQNQVYGPLNGKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVS 497

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+N     +     +  I +       L   + D++RL Q+   +L+NA+ F+ +G  V
Sbjct: 498 ALVNHSLTFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKV 557

Query: 709 ILKA----------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           +++A          ++      F+V + G  I  D   ++F  FV       RR  G GL
Sbjct: 558 VVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGL 617

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLS+V+  + LHGG V+++S     +     IP
Sbjct: 618 GLSLVKKIVELHGGSVTVTSKLNEGSRFKITIP 650


>gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon]
          Length = 476

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 4/244 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +R  + L   NE L++ D +K+ FV  VS+EL++PLT +     +L+    G     +
Sbjct: 230 DLIRTNKELALANERLKELDRLKSDFVSMVSHELKTPLTAMRTSAQVLE--AAGIATETK 287

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I  +     NLVND+LDL+ +++G MKL + ++ L+ L+ +  +S+     E  
Sbjct: 288 REMLDIILRNIDRQTNLVNDLLDLSRIESGRMKLKFESVSLDSLIADSIESVKHAASEKG 347

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++ V     L S   DR++L Q+   +L+NA+ F+ +   + +KA   NG     V + 
Sbjct: 348 IKLNVKLPEGLSSVKGDREKLTQVVINLLNNAIKFTPRSGEISIKAIELNGQVEVKVSDT 407

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +  + VF++F        R   G GLGL+I +  I  H GH+   S     +T 
Sbjct: 408 GIGIPPEDLEKVFDKFYQVDSTLTREAGGTGLGLAICKGIIEAHNGHIWAESELGKGSTF 467

Query: 785 NCRI 788
              +
Sbjct: 468 VFTL 471


>gi|158334364|ref|YP_001515536.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158304605|gb|ABW26222.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 2817

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 127/742 (17%), Positives = 251/742 (33%), Gaps = 82/742 (11%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSC--------AFLRILS 170
            +       + +   +     Q F L         I  +G +            A  ++  
Sbjct: 1805 IHPGDVEWVDQVINEQLTHHQPFSLEY-----RVIHRDGSIRWVTEKGKGIFNADHQLQH 1859

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWANISYKKNTETE 229
            L+G+  ++++       L    +     FD     +V   +Q G I   N          
Sbjct: 1860 LEGVIFDISDRKHTELALQLSEARANAAFDQAALGIVEVNNQTGKISRVNNYMCDLLGYS 1919

Query: 230  GIVFQKA----IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
             +   +     I     L +     +++    +     E     + G          L  
Sbjct: 1920 RLELLQKTVADITHPDDLSESYQLMQLLQRGKIGNFTTEERYLRQDGGIIWSSTTVTLVE 1979

Query: 286  FG------EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA------IFDQNRY--LQFH 331
             G        G+  D+S        L  +      +T  +       +F  +    L + 
Sbjct: 1980 MGNGEAQYSLGMIQDISDRKAAELALKDSQAQFRRMTENVPGMIYRYVFHPDGQNELTYI 2039

Query: 332  NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKD 390
            +    E++EI+      + S  +L E +      P+ L + ++  +      +S+     
Sbjct: 2040 SSQVREIFEIEPEVALQDAS--KLWERVH-----PDDLAFVQSEIQGFHETLQSTPIECR 2092

Query: 391  TWHLPNG-QTLHVIVT--SNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                  G   + +I        G T+W  +  +++ +   E       +     I+    
Sbjct: 2093 LLLPQKGLCWIQLIARIERLDNGDTVWDGVALDISDRKAAEANLRFSEQRFRRAIEDAPF 2152

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI----------RNIAATCSRYYNESD 495
             + +   DG +   N  +  L       +                R +    ++ Y  + 
Sbjct: 2153 PIMLHAEDGEVLQINTTWTELTGYTHPEIPSTAAWAERAYGKDAARVLKEVMAKKYTLTS 2212

Query: 496  GWDLFAAIITSFDDERKSLQ------GTLELLSDSVLEYSII---------PLPNAQTML 540
             W+     I + + ++   Q      G L      V+  ++           L  A   L
Sbjct: 2213 RWEEGEFTIQTKNGDQCRWQFSSAPLGVLPDGRRIVISMAVDVTQRRQTEDELEQANQQL 2272

Query: 541  TFVNVTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
               + T   R E   +AL    E    A++ K+ F+ ++S+ELR+PL  I+G+  +L  S
Sbjct: 2273 AEYSHTLEQRVEERTQALQIAKEQADSANQAKSEFLANMSHELRTPLNGILGYAQILNRS 2332

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               +L  K+   ++ I    + LL+L++DILDLA ++A  ++L      L  +L+ V + 
Sbjct: 2333 --TTLIDKERDGIKVIHQCGSHLLSLIDDILDLAKIEARKLELVPVDTYLPAVLHSVVEI 2390

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAA 713
               K  +  I               D + L Q+   +L NA+ F+  G+      +L  +
Sbjct: 2391 CKIKAQQKGIDFVYAPKDLPIGVRVDEKCLRQVLINLLGNAVKFTDNGTVTLNVEVLSTS 2450

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHV 772
                  +F V + G  I E     +F+ F    A   +  G GLGL+I +  + L G  +
Sbjct: 2451 NQEASLLFQVMDTGIGIAETDLSKLFDAFEQVGARDRRAEGTGLGLAISQRIVQLMGHSI 2510

Query: 773  SISSSDEGVTTINCR--IPSKE 792
             + S     +  + R  +P  E
Sbjct: 2511 EVKSQVGIGSQFSFRLDLPLTE 2532



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 61/479 (12%), Positives = 143/479 (29%), Gaps = 72/479 (15%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
             A  +L+  +L   +++   + +S    +   +  G  ++ N  +      E        
Sbjct: 1494 QAAISLENARLFESLALKSSIIESAVDGMAILEG-GKFIYLNQFHTTLFGYEPNELLGQS 1552

Query: 238  GE------SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG-EAG 290
             E        +LF+E     +  +        E  +  + G++   ++   L   G    
Sbjct: 1553 WEKLYSPAEVQLFQEIAFPILAKTGRWSG---EATAIRKDGSSLDEEVSLFLLDNGKLIC 1609

Query: 291  IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            I  D+S              ++ +    I   +    +   N++  +L+    A      
Sbjct: 1610 ICRDISDRKIAEANSRLLASVVESSNDVIVTKNLEGIITSWNQAATDLFGYSEA------ 1663

Query: 351  SNDELLEFLRSANKLPEQLNWKTWKENIFSVY---KSSETHKDTWHLPNGQTLHVIVTSN 407
                  E +  +  +    +    + +I +     KS E  +       G  + + VT +
Sbjct: 1664 ------EAIGQSILMLFPPDRHHEETHILTCLKNKKSVENFETVRLHKQGYPIDISVTIS 1717

Query: 408  P----RGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            P    +G  I    +  ++  +   E             + +L +GV         +  N
Sbjct: 1718 PLVNSQGKVIGASKIVRDIRERKIAEVALRQSESKFRNLLTNL-DGVV-------YRCQN 1769

Query: 461  PAFRSL-WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGT 517
             A  ++ + ++      G  + +      R Y         A+II   D E   + +   
Sbjct: 1770 DAHWTMEFMSDAVTALSGYPVADFIDNRHRSY---------ASIIHPGDVEWVDQVINEQ 1820

Query: 518  LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            L       LEY +I   +               A+  L      +    + K++ +    
Sbjct: 1821 LTHHQPFSLEYRVI-HRDGSIRWVTEKGKGIFNADHQLQHLEGVIFDISDRKHTELA--- 1876

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST--ILLNLVNDILDLATVD 634
                           L +     + +      VE  + +     + N + D+L  + ++
Sbjct: 1877 -------------LQLSEARANAAFDQAALGIVEVNNQTGKISRVNNYMCDLLGYSRLE 1922


>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1267

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 175/399 (43%), Gaps = 29/399 (7%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-E 470
            + + E +T   D E K     +   +  ++L E   +      +   +PAF  L+    
Sbjct: 348 RLSIREKITKLKDSEEKLRQSEEKLRQLAENLDELFWL-RTHREMLYVSPAFEKLFGKKC 406

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD----DERKSLQGTLELLSDSVL 526
            + L              R    S            FD    DE + +    E+     +
Sbjct: 407 TSFLENPDTFLEFVHPDDRGKAISIFSGSIGKQEDIFDGAYNDEFRIVSPDGEIC---WI 463

Query: 527 EYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               +P+ +A   +  +     +VT   + E+ALTE  E    +  +K+ F+ ++S+E+R
Sbjct: 464 WAKTVPVKDADGEVVRIAGVASDVTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIR 523

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  IIGF  LL  ++   LNSKQ  Y+  I + S  LL ++NDILD + ++AG M + 
Sbjct: 524 TPMNGIIGFCHLLMQTQ---LNSKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVE 580

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMD 700
           +    L +++ ++   +  +  +  + +      G       D  RL Q+   + +NA+ 
Sbjct: 581 HVDFNLEEVIADLFYLLENQASQKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIK 640

Query: 701 FSSKGSTVILKAAR------DNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
           FS +G  + L+  +      D+   I  FSV++NG  + E+  + +FN F        R 
Sbjct: 641 FSDQG-NIFLRVEKIDQSDSDSDQVIISFSVEDNGIGLTEEQMQRLFNSFSQADSSTTRK 699

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGL+I +  + L GG +S+SS     +T +  +P
Sbjct: 700 YGGTGLGLAISKYLVELMGGEISVSSEYGVGSTFSFSLP 738


>gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4]
          Length = 527

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 166/370 (44%), Gaps = 27/370 (7%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E + + L+ +    I+++  G+ +  P G + L N  F+ L++ + +            
Sbjct: 175 QELQQDRLLTL----IENMGSGLLLIDPRGFVVLMNKTFKELFEVDPSNYLKK------- 223

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
               RY+      D+   +   F  E K  +   +LL    LE     +  A  +     
Sbjct: 224 ----RYHEAIQHEDIIKVVEEVFMTEEKVRK---QLLLPLHLERKHFEVYGAPIIGIS-- 274

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             D  +    +      L+K ++++  FV +VS+EL++P+T+I GF++ L    L   ++
Sbjct: 275 --DEWKGILLVFHDITELKKLEQMRKDFVANVSHELKTPITSIKGFSETLLDGALEDRDT 332

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
               ++  +   S  L +L+ D+LDL+ ++    KL+ ST  L+ LL EV   +  K  E
Sbjct: 333 -LEYFLNIMLTESDRLQSLIQDLLDLSKLEQHGFKLDVSTFDLSRLLEEVVLMLKGKAEE 391

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             I+++     +L +   D  R  Q+F  +++NA+ ++  G  V +    +  +    V+
Sbjct: 392 KEIQLQFEPIPEL-TLEGDMNRFKQVFINLINNAISYTGPGGHVKVFVKEERDEITIKVQ 450

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  I       +F RF     A      G GLGL+IV+  +  H G + + SS+   T
Sbjct: 451 DNGVGIAASELPRIFERFYRIDKARSRNSGGTGLGLAIVKHIVEAHHGEIDVESSEGVGT 510

Query: 783 TINCRIPSKE 792
           T   ++ SKE
Sbjct: 511 TFIVKV-SKE 519



 Score = 44.9 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 61/143 (42%), Gaps = 17/143 (11%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA-FLAT 348
           +A ++ + ++  + Q      ++ N+   + + D   ++   N++F EL+E+D + +L  
Sbjct: 164 LARNLQEMVSAQELQQDRLLTLIENMGSGLLLIDPRGFVVLMNKTFKELFEVDPSNYLKK 223

Query: 349 N----PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                  ++++++ +       E++     ++ +         H + +  P      +I 
Sbjct: 224 RYHEAIQHEDIIKVVEEVFMTEEKV-----RKQLLLPLHLERKHFEVYGAP------IIG 272

Query: 405 TSNPRGGTIWMFENLTVQVDLET 427
            S+   G + +F ++T    LE 
Sbjct: 273 ISDEWKGILLVFHDITELKKLEQ 295


>gi|218441977|ref|YP_002380306.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174705|gb|ACK73438.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1058

 Score =  299 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 90/418 (21%), Positives = 180/418 (43%), Gaps = 35/418 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I  S+  G     F+ +  Q+     +         + ++ +  G++V    G++  +N 
Sbjct: 411 ISRSDEVGQLAQSFKMMAEQLQKSFAELQNTQHRLNQFLEAIPVGISVHDTTGKLYYANR 470

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             + +        +    +     T     N+    +    +I +   E   ++  +EL 
Sbjct: 471 KSQEILGITSPLDAQKEQLSQAYHTYQAGTNQLYPIETM-PVIRALRGETAYVE-DMELH 528

Query: 522 SDS---VLEYSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKA-------- 565
            D+    +E    P+ + Q  + +      ++T     E+ L + N  L K         
Sbjct: 529 QDNKIIPIEVWATPIYDDQGQIVYAIAAFQDITQRKHTEQLLADYNHTLEKQVIQRTAEL 588

Query: 566 ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     ++ K+ F+ ++S+ELR+PL  I+GF+ L+  S   +L  +  + ++ I+ 
Sbjct: 589 AEAKEKAEVANQAKSRFIANMSHELRTPLNAILGFSQLMNRS--TTLPPEHQENIQIINR 646

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   LL L+N+IL LA ++AG   LN S   L  LLNE+++       + N+ +    D 
Sbjct: 647 SGEYLLTLINNILTLAKIEAGKTSLNLSNFDLYSLLNEIEEIFYLAAKKKNLNLTFERDK 706

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL-KAARDNGDFIFSVKNNGSSIPE 732
            +  ++  D  +L ++   +LSNA+ F+ +G   V +   ++     +F+VK+ G  I  
Sbjct: 707 TIPQYIRTDEVKLREVLINLLSNAIKFTPRGDILVDVQTLSQKPITLLFTVKDTGVGITP 766

Query: 733 DMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F+ F    + +  + G GLGL+I   F+ L GG +++ S     T     +P
Sbjct: 767 EELDILFDAFSQTQSGKNSQEGTGLGLAISRQFVELMGGELTVDSQIAVGTIFRFTLP 824



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 15/149 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + +      + L  + V I++ D    L + NR   E+  I     A      E L  
Sbjct: 436 AELQNTQHRLNQFLEAIPVGISVHDTTGKLYYANRKSQEILGITSPLDAQK----EQLSQ 491

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNP----RGGTI 413
                +      +      +    +    + +   L  + + + + V + P    +G  +
Sbjct: 492 AYHTYQAGTNQLYPIETMPVIRALRGETAYVEDMELHQDNKIIPIEVWATPIYDDQGQIV 551

Query: 414 W---MFENLTVQVDLET---KYNTLVKVQ 436
           +    F+++T +   E     YN  ++ Q
Sbjct: 552 YAIAAFQDITQRKHTEQLLADYNHTLEKQ 580


>gi|117926806|ref|YP_867423.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610562|gb|ABK46017.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1271

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 139/810 (17%), Positives = 284/810 (35%), Gaps = 80/810 (9%)

Query: 24   IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
            +A F ++    L      +  I      ++ + E  S   ++  +    ++++   + L 
Sbjct: 344  LARFVSLQASPLFDQNGALWAI---IESSRDITEYMSMQEQLKQESDTSNAIIDALSGLF 400

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
            I+ D           L +   + +      S  +++         +A EK+  EG +   
Sbjct: 401  ILLDADGCLVRWNSNLAKMTGLDEQSFAGRSILDFVAPTSRNAFIEAMEKVLTEGLATQE 460

Query: 144  VAETQNDC----------AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
                               I+IEG+          L L G+  +++E       L     
Sbjct: 461  SYLQTMGRQQIPFAFQINRIEIEGK----------LYLSGMGVDISEQLSMRHALQESQD 510

Query: 194  VFKVLFDSLDF--LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
            +   +        +VW +  +G + W+   Y       G+   +     R L     +  
Sbjct: 511  ILDQVQKVAQLGGIVW-KPASGFMQWSAQVY----PMLGLQPGQRSLSLRTLLHGLSRHA 565

Query: 252  MISSSALEKNFCETVSTLEHGNNKS--YK-IVRVLNSFGEAGIAIDVSK----------- 297
                        +T   +         +  I R L+  G+   + D              
Sbjct: 566  RKGLLQRLGELRDTRHHVIERELHLLGFDGIKRYLHLRGQHRQSHDQEHPQILITLQDLT 625

Query: 298  -----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
                 +  +  QLT    +L+ + + +   D+    Q  N +F +L    L  L      
Sbjct: 626  PHKIIQHQLQHQLTFQQTLLNTIPIPVFYKDRQLRYQIANEAFSKLLNQPLETLIGRTVY 685

Query: 353  D-ELLEFLR----SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
            +   LE  +    + + L +  +     +      +S   H   ++        V     
Sbjct: 686  ETSPLEMAKIYDIADHNLLDHPDRVQQYQATIQP-QSDNPHHVVFYKAV-----VPGEQG 739

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSL 466
               G +    ++T Q   +       +     +  L   + V   +   +  +N A R  
Sbjct: 740  QHAGIVGAILDVTEQTRAQKALEESNRRFETVLGSLESYLFVTNIESNMVLFTNHAAR-- 797

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ-GTLELLSDSV 525
                   L  G  +            +  G         S        +    E      
Sbjct: 798  -------LRFGETVGQPCWKTFHLGCKEGGCQSCIQGGASIPHHGHHWEYHNKESGEWYT 850

Query: 526  LEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +   +IP  +   +      ++T   +A+ A  +  E   +A+  K+ F+  +S+E+R+P
Sbjct: 851  IRIRLIPWTDGHYVRLLVANDITVLKQAQEASRQAMEQAERANRAKSEFLATMSHEIRTP 910

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            +  ++G +D+L  S     N +  ++++ I  + T LL+L+NDILDL+ ++AG ++L ++
Sbjct: 911  MNVVVGMSDILLESL---PNPQAQKHIQLIQKAGTTLLDLINDILDLSKIEAGQLELEHA 967

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
                  L+ +       +     + +     G +    + DR RL QI   +L NA+ F+
Sbjct: 968  VFNPILLIEDTIAIFQMQAKLKGLTLTSSMTGHIPHALMGDRARLRQILVNLLGNAIKFT 1027

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
             KGS V ++A   N  F ++V ++G  I  D    +F++F         +  G GLGL+I
Sbjct: 1028 EKGS-VEVQAGYANQQFWYAVVDSGVGIGSDSLLRIFDKFTQADSGVARRFGGSGLGLAI 1086

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIPS 790
             ++ + L GG +   S+    +   C IP+
Sbjct: 1087 CKNLMELMGGTIETQSTLGQGSRFYCAIPA 1116



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 65/215 (30%), Gaps = 16/215 (7%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +    +   +I+  ++  + +   +  +   N +                    L+   
Sbjct: 251 RLERDRSQLQQIIDGVSEPLMVIRTDYRIVLMNEAARSYN--PELATKQANCYCHLMTHQ 308

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNP---RGGTIW 414
           R+                +  V ++ +  +        +G    V + ++P   + G +W
Sbjct: 309 RNT-----PCEGHDHPCPLEQVVRTQQPFRTVHRHINRDGLARFVSLQASPLFDQNGALW 363

Query: 415 MF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
                  ++T  + ++ +           ID LS    +   DG +   N     +   +
Sbjct: 364 AIIESSRDITEYMSMQEQLKQESDTSNAIIDALSGLFILLDADGCLVRWNSNLAKMTGLD 423

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           E   +  + +  +A T    + E+    L   + T
Sbjct: 424 EQSFAGRSILDFVAPTSRNAFIEAMEKVLTEGLAT 458


>gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB]
 gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1028

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/546 (20%), Positives = 213/546 (39%), Gaps = 75/546 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVA----IAIFD-----------QNRYLQFHNRSFVELWEIDL 343
             +  + + T   +  L+ A     AIFD            +  + + N +    +    
Sbjct: 350 RRLKGERSRTKATMAQLSAAEARFRAIFDNVETLAIQGYLADGTVAYWNNASQTTYG--- 406

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV- 402
            + A       LL+ +       +      W   +FS        +      +G T+ V 
Sbjct: 407 -YTAQEALGKSLLDLIIPPAMREDVRGAVQW---MFSHKTGIPPGRLKLQRKDGSTVEVY 462

Query: 403 ----IVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
               ++ +  +G  ++  + NLT  V  E         Q   +  L EGV     DG   
Sbjct: 463 SSHTVIDTADKGPMMFCLDINLTELVHTEQALIESESRQRMILQTLGEGVYGTDLDGVCT 522

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA----IITSFDDERKS 513
             NPA       +E+  + G +   +      +++ +DG  L  A    I+T+ D + + 
Sbjct: 523 FINPAALDYLGLQEDE-ALGKNTHTLF-----HHHRADGTPLPLAECPLILTARDGQSRR 576

Query: 514 LQGTLEL---------------LSDSVLEYSIIPLPNA----------QTMLTFVNVTDS 548
           L+                    L D V+   ++   +           +   T +     
Sbjct: 577 LEDVFWRKNGECFPVRLTITAKLRDGVITGVVVSFADISENRRVAKELEQHHTHLEAQVR 636

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E+ L    +A   A+  K++F+ ++S+E+R+PL  ++G   LL+     +   +Q  
Sbjct: 637 QRTEQ-LEIARQAAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLRR---DAPTLEQID 692

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I ++S  LL ++NDILD++ ++AG + L+ +T+ +  +L  V   +  +  +  + 
Sbjct: 693 RLDKIDSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRVVSVLGDRARQKGLE 752

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSV 723
           ++V++D    +F+ D  R+ Q       NA+ F+  GS + LKA R   D       F V
Sbjct: 753 LRVLADDFPHTFIGDPTRITQCLINYAGNAVKFTEHGS-ITLKARRMADDSNGVLIRFEV 811

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +D    +F  F        R   G GLGL+I      L GG V +SS     
Sbjct: 812 EDTGIGISDDAIDRLFGIFEQADSSTSRKFGGTGLGLAITRRLAELMGGKVGVSSRVGAG 871

Query: 782 TTINCR 787
           +     
Sbjct: 872 SRFWFT 877



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 109/350 (31%), Gaps = 52/350 (14%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAE-TQNDCAIKIEGRVSGSCAFLR-----------I 168
              Y  + +   +LR     FD   + T ND  ++  G V    A L             
Sbjct: 290 PEDYRPVDELMRQLRLS--PFDAPPKFTINDVFVQF-GAVIAVIAILGISVLIAIVLALF 346

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKNT 226
            ++  +  E + T     +LS   + F+ +FD+++ L   +     G + + N +   + 
Sbjct: 347 RTIRRLKGERSRTKATMAQLSAAEARFRAIFDNVETLA-IQGYLADGTVAYWNNA---SQ 402

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALE---------KNFCETVSTLEHGNNKSY 277
            T G   Q+A+G+S          R     A++               +   +    + Y
Sbjct: 403 TTYGYTAQEALGKSLLDLIIPPAMREDVRGAVQWMFSHKTGIPPGRLKLQRKDGSTVEVY 462

Query: 278 KIVRV--LNSFGEAGIAIDVS------KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
               V      G     +D++       E  + +  +    IL  L   +   D +    
Sbjct: 463 SSHTVIDTADKGPMMFCLDINLTELVHTEQALIESESRQRMILQTLGEGVYGTDLDGVCT 522

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP--EQLNWKTWKENIFSVYKSSET 387
           F N + ++   +         ++            LP  E     T ++      +    
Sbjct: 523 FINPAALDYLGLQEDEALGKNTHTLFHHHRADGTPLPLAECPLILTARDGQSRRLE---- 578

Query: 388 HKDTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNT 431
             D +   NG+   V +T   +       G +  F +++    +  +   
Sbjct: 579 --DVFWRKNGECFPVRLTITAKLRDGVITGVVVSFADISENRRVAKELEQ 626


>gi|294851985|ref|ZP_06792658.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|294820574|gb|EFG37573.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 798

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 257 AARAREADDLSRQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 310

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 311 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 368

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 369 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 428

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 429 YAGLPVWMLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 488

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 489 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 547

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 548 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 607

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 608 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 667

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 668 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 726

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 727 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 783


>gi|172065661|ref|YP_001816373.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997903|gb|ACB68820.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 770

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/499 (19%), Positives = 192/499 (38%), Gaps = 33/499 (6%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-PEQL 369
           +L  L   +   D    + + N + + L    L      P  D L  F R   ++ P  L
Sbjct: 132 VLQALPEGVIATDAQGCITYVNAAAIALAGGALDDATGRPVRDVLHVFDRDDRRVQPTPL 191

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVIVTSNP-------RGGTIWMFENLTV 421
                  +  S        +   H  +G  ++ ++  ++P         G + +  +   
Sbjct: 192 ERALAGAHALS-------DRHWLHGADGSPSVPIVEAASPIVDAHGNLDGAVLLLRD--- 241

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
               E     + ++Q   +D   + +     +GRI   NPA + ++  +E          
Sbjct: 242 -AGTERALAEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLET 300

Query: 482 NIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            +A    R    +D +D     +          D  R     +   +         + L 
Sbjct: 301 LVAMRWLRRNPLADSFDAMREAVGPLELLCVRRDGRRFRATVSAGPVHGGARSCVALSLT 360

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +T         + R+ +   +  +    ++ +K+  +  VS+ELR+PL  I G+ ++L
Sbjct: 361 LRETGAQRRRDLRTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + ++  +L     Q ++ I  S+  L  +V DILD +++  G ++++   + +  L ++ 
Sbjct: 421 RNTRDDALE---QQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDT 477

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +  T      I ++            D +RL Q+ + ++SNA+ F+  G  V +  +R
Sbjct: 478 VGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLSR 537

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
           D+   +  V + G  IP      VF+ F          RRG+GLGLSIV     LHGG V
Sbjct: 538 DDAHAVLVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGLHGGQV 597

Query: 773 SISSSD-EGVTTINCRIPS 790
            + S       T    +P+
Sbjct: 598 RVESEGRNRGATFTVTLPA 616



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/407 (13%), Positives = 113/407 (27%), Gaps = 48/407 (11%)

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV---------FKVLFDSLDFLV 206
            G +S     L I  L G+        L+  + +N ++             +  +L   V
Sbjct: 81  TGPLSDRLVRLGIFMLVGVLVCAIAARLRHTRRTNDLAYRREAAARRQLDAVLQALPEGV 140

Query: 207 WHRDQAGDILWANISYKKNTETE-GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
              D  G I + N +              + + +   +F  + ++   +           
Sbjct: 141 IATDAQGCITYVNAAAIALAGGALDDATGRPVRDVLHVFDRDDRRVQPTPLERALAGAHA 200

Query: 266 VSTLEHGNNKSYK---------IVRVLNS--------FGEAGIAIDVSKEITVNDQLTHT 308
           +S     +              IV   +          G   +  D   E  + +     
Sbjct: 201 LS-----DRHWLHGADGSPSVPIVEAASPIVDAHGNLDGAVLLLRDAGTERALAEVSRLQ 255

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             ++     AI   D+   +   N +   ++  D A     P   E L  +R   + P  
Sbjct: 256 RAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPL--ETLVAMRWLRRNPLA 313

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            ++   +E       +    +      +G+     V++ P  G       L++ +     
Sbjct: 314 DSFDAMRE-------AVGPLELLCVRRDGRRFRATVSAGPVHGGARSCVALSLTLRETGA 366

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATC 487
                     ++    +         R   SN     L  T  + L    + I       
Sbjct: 367 QRRRDLRTQRSLQGARDA------RDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               +++       AI  S     + +   L+  S +  +  I P+P
Sbjct: 421 RNTRDDALEQQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMP 467


>gi|192290539|ref|YP_001991144.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192284288|gb|ACF00669.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 769

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/524 (20%), Positives = 210/524 (40%), Gaps = 50/524 (9%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANK 364
           +     L+     +  +D +R   F ++S   +  ++        S ++LL F   +A  
Sbjct: 246 SRIDTALNRGRCGLWDWDLSRGRIFWSQSMFTILGLE--------SRNDLLTFGEVNALV 297

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFE 417
             E ++     + + +       H       +G  + + +               I +  
Sbjct: 298 KGEDIDLFAIADELMAGRVDHIDHSFQMRHAHGHWIWLRMRCELTQEAGATEKHLIGIAV 357

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +         + I+ + E   ++  + R+ L N  F+ L K  ++ ++PG
Sbjct: 358 DITEQKSLAERSVEADLRLRDAIETIPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPG 417

Query: 478 THIRNIAATCS------RYYNESDGWDLFAAIITSFDD-------ERKSLQGTLELL--- 521
           T    I           R  +               DD       ER++  G    +   
Sbjct: 418 TSYETILEVGRMPQLRTRLCDNGAVMPGARTFEAQLDDGSWLHISERRTKDGGYVAVGTD 477

Query: 522 -------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                        +D  L  ++  L   Q+        +     R   ++     +A++ 
Sbjct: 478 ITRIKAHEQKLVDNDLRLRATVADLKITQS-KLEKQALELADLARKYADEKRRAEEANQT 536

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+ELR+PL  IIGF++++ +   G+L + K  +Y   I  S   LL ++NDI
Sbjct: 537 KSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDI 596

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ ++AG M+L    + L   + E  + +A +    ++ ++   + ++   VADR+ +
Sbjct: 597 LDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLELRSELNDQIP-IVADRRAI 655

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +LSNA+ F+     V ++     G  +  + + G  IP    + +   F     
Sbjct: 656 KQILINLLSNAVKFTPDAGRVTVRGHVAGGSIVLMIADTGIGIPPQSLRRLGQPFEQVES 715

Query: 748 --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  G GLGL+I +S +NLHGG + + S+    T +   +P
Sbjct: 716 QLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVSLP 759



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 83/250 (33%), Gaps = 33/250 (13%)

Query: 213 GDILWANISY-------KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
           G I W+   +       + +  T G V     GE   LF    +        ++ +F   
Sbjct: 267 GRIFWSQSMFTILGLESRNDLLTFGEVNALVKGEDIDLFAIADELMAGRVDHIDHSFQMR 326

Query: 266 VSTLEHGNNKSYKI---VRVLNSFGE-----AGIAIDVSKEITVNDQLT----HTYEILH 313
                H +     +     +    G       GIA+D++++ ++ ++         + + 
Sbjct: 327 -----HAHGHWIWLRMRCELTQEAGATEKHLIGIAVDITEQKSLAERSVEADLRLRDAIE 381

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            +  A  ++D    L   N  F  L ++  + +    S + +LE      ++P+      
Sbjct: 382 TIPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETILEV----GRMPQLRTRLC 437

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
               +    ++ E   D     +G  LH+       GG + +  ++T     E K     
Sbjct: 438 DNGAVMPGARTFEAQLD-----DGSWLHISERRTKDGGYVAVGTDITRIKAHEQKLVDND 492

Query: 434 KVQGETIDHL 443
                T+  L
Sbjct: 493 LRLRATVADL 502


>gi|298248593|ref|ZP_06972398.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551252|gb|EFH85118.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 983

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/773 (16%), Positives = 275/773 (35%), Gaps = 80/773 (10%)

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE-----IIGQLHQRIDIPQTDTDLLSF 115
            ++E     ++ H+L+       +VW      P+        +      +         +
Sbjct: 246 DITERKRAEAELHALIDTIPQ--LVW---TMRPDGYIDYYNQRWLDYTGLSTEQAQGDGW 300

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD--- 172
              L      ++  A +  R+ G  F+     ++          +G+  +    ++    
Sbjct: 301 IQCLHPDDQQRIRDAWQMSRETGTPFETEQRLRHG--------TTGAYHWFLARAMPMRD 352

Query: 173 ---------GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
                    G  +++ E     ++L       +VL +++  +VW     G   + N  ++
Sbjct: 353 ETGQIIKWFGTCTDIEEQKQAEQQLKESQESLRVLAETVPQMVWVARPNGLHEYTNQRWQ 412

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMIS------SSALEKNFCETVSTLEHGNNKSY 277
             T +     Q       +    E ++R  +       +       E +   + G  + +
Sbjct: 413 DYTGSTLEHMQNGRWAHLQFIHPEDRQRHRAHWQHALDTGTMFEHEERIRNGQTGEYRWF 472

Query: 278 --KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRY 327
             + + V +  G+     G + D+ ++     QL  + E L  L   +         +  
Sbjct: 473 LARGMPVRDDAGQIVKWFGTSTDIDEQKQAERQLKESRESLRVLAETVPQLVWVKRPDGQ 532

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            ++ N+ + +   + L  + ++      L+F+   ++   + ++    +         E 
Sbjct: 533 HEYTNQRWRDYTGLTLDQIQSDRWVH--LQFIHPEDQEGHRASF----QRALDTGAMFEY 586

Query: 388 HKDTWHLPNGQTLHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGETI 440
            +   H   G+    +  + P     G  I  F    ++  Q  +E       +     +
Sbjct: 587 EQRLRHAQTGEYRWFLTRAMPMRNEAGQIIKWFGTNTDIEDQKRIEEALRQSQERASVLM 646

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           +    G+ V     +I  +N  F  +       L  G  +  +  T   Y  ++      
Sbjct: 647 NSNIIGIFV-DEGEQIVDANDTFLRMTGYTREDLHAG-RLNWMHMTPPEYLAQTRQAHQE 704

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
            A   S     K              EY          ++    +        A    N 
Sbjct: 705 LAAQQSLTPYEK--------------EYVCQDGSRLNVLVCGDVLQHHPFQGIAFVLDNS 750

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++ ++ K+ F+   S+EL++PLT +   T L++       + + +  +  +      L
Sbjct: 751 APKELEQRKDDFISMASHELKTPLTTLKMQTQLVRKRLERQAHHEAATALSKVEGPVKQL 810

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      + 
Sbjct: 811 ERLVGELLDVSKIQAGRLEYIRETVNLDALLHEVADTMQQISTTHTI---VVRGATSCTL 867

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V D+ RL QIF+ +LSNA+ +S    TV +            V+++G  IP +    +F 
Sbjct: 868 VGDKDRLGQIFTNLLSNAIKYSPGAETVEMDLEASEDAVTIRVQDHGLGIPREQRDKIFE 927

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF   A   QR   G+G+GL IV   +  HGG +++ S+    +T    +P +
Sbjct: 928 RFYRVAGPRQRAIPGLGMGLYIVAEIVMGHGGTITVDSAVGKGSTFMVTLPKR 980



 Score = 44.9 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 84/268 (31%), Gaps = 26/268 (9%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                IL  L  A+ + D    + + N S   L       L   P         R A +L
Sbjct: 16  ETLLTILETLPGALFVVDDAATIVYANASAQTLTGATREELLGKP-------LWRGAPQL 68

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
                ++     +    ++ E     +  P   + L V +     GG +       V   
Sbjct: 69  GSTSLYQA----VQQATQTREPTNVEYRSPVTQRWLRVQLAPT-VGGLMVQAHQGRVAAR 123

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E       ++  + +D L   + V  P G +   N            ++     I    
Sbjct: 124 REAPVPQDERLSIDDLDGLLSRIGVLTPKGIVLEINE-----DPLAHAQIRREEVIGQPL 178

Query: 485 ATCSRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTMLT 541
           A    + +  +    L AAI  +   E    +  +      D  L+ +I P  +A   + 
Sbjct: 179 AEARWWSFYPASQEQLRAAIARASRGETVRFETVIHPREGLDRHLDVAITPHRDADRHIA 238

Query: 542 F-----VNVTDSVRAERALTEKNEALRK 564
           +     +++T+  RAE  L    + + +
Sbjct: 239 YLVLAGIDITERKRAEAELHALIDTIPQ 266


>gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1373

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 173/397 (43%), Gaps = 26/397 (6%)

Query: 413  IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            I +  ++      E       +     +++  + +     +  I L N     ++     
Sbjct: 746  IGLERDI-----AEQGLKESQERLQGILENAEDAIISVDENQNILLFNHGAEKIFGYSPA 800

Query: 473  RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSI 530
              + G  + N+    +R  +     D       S     +S +  G  +   +   E SI
Sbjct: 801  E-AIGQSLENLLPMNARNVHHQYVSDFSHLECQSRKMGERSREVCGRRKTGEEFPAEASI 859

Query: 531  IPLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
              L      +      ++T   +AE  L +  +A   A+  K+ F+ ++S+ELR+PL  I
Sbjct: 860  SKLKMRDGWIFTAILKDITKRKQAEMVLEQAKDAAEAANRAKSEFLANMSHELRTPLNAI 919

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            +GF+ L+      SL S+Q   +  I++S   LL L+N ILDL+ ++AG M LN ++  L
Sbjct: 920  LGFSQLMNRDP--SLTSEQQNSLNIINSSGEHLLTLINSILDLSKIEAGRMILNENSFDL 977

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            + LL+ +++ +  K+    + +    D  +  F+  D  +L Q+   +L NA+ ++ KG 
Sbjct: 978  HHLLDTLEKMLHLKVETKGLSLLFERDENVPQFIKTDEGKLRQVLINLLGNAIKYTDKGG 1037

Query: 707  TVI--------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLG 757
              +        L+ + +  + +F V + G+ I  +   ++F+ FV     R  ++G GLG
Sbjct: 1038 VSLKVKQQSYPLEKSPETVNLVFEVTDTGTGISSEEISTIFDAFVQTTTGRKSQQGTGLG 1097

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINC---RIPSK 791
            L I   F+ + GG +   S     T+       IP+K
Sbjct: 1098 LPISRKFVQMMGGDIRAKSELGTGTSFEFNLRVIPTK 1134



 Score = 40.7 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 71/205 (34%), Gaps = 16/205 (7%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
           + +   +    C  V +++    +  K+++ +      G+  D++++  + +       I
Sbjct: 709 ISAGEIVGSVGCSMVRSVKEWTPEEIKLIQRVGEIIPIGLERDIAEQ-GLKESQERLQGI 767

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L N   AI   D+N+ +   N    +++    A  A   S + LL             ++
Sbjct: 768 LENAEDAIISVDENQNILLFNHGAEKIFGYSPAE-AIGQSLENLLPMNARNVHHQYVSDF 826

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIW--MFENLTVQVDLE 426
              +     + + S           G+      + +    R G I+  + +++T +   E
Sbjct: 827 SHLECQSRKMGERSREVCG--RRKTGEEFPAEASISKLKMRDGWIFTAILKDITKRKQAE 884

Query: 427 T-------KYNTLVKVQGETIDHLS 444
                         + + E + ++S
Sbjct: 885 MVLEQAKDAAEAANRAKSEFLANMS 909


>gi|328554527|gb|AEB25019.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328912933|gb|AEB64529.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 579

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 148/371 (39%), Gaps = 27/371 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++    +         I+++  G+ +    G I L N ++   + T+  RL        
Sbjct: 225 MEMTRTQDMQRDRLLTVIENIGSGLILIDGRGFINLVNRSYTKQFHTKPERL-------- 276

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSVLEYSIIPLPNAQTM 539
                 R Y+++   +    ++             L L   +     E   +P+      
Sbjct: 277 ----LRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVDGVPI------ 326

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +   D  +    +      ++K ++I+  FV +VS+EL++P+T+I GFT+ L    +
Sbjct: 327 ---MGPDDEWKGIVLVFHDMTEIKKLEQIRKDFVANVSHELKTPITSIKGFTETLLDGAM 383

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              +   S ++  I   S  L +LV D+LDL+ ++     +   +     +L+E++  + 
Sbjct: 384 KD-DKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLQ 442

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E  I  ++    +      D  RL Q+F  + +NA+ ++ +  TV +         
Sbjct: 443 HKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFLNLANNALTYTPEKGTVGISVNVKETVV 502

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I ++    +F RF            G GLGL+IV+  I  H GH+ ++S 
Sbjct: 503 DIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGHIEVTSE 562

Query: 778 DEGVTTINCRI 788
               T     +
Sbjct: 563 PGQGTVFTVTL 573



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
            +S ++ R +NS     +A+D+ +     D Q      ++ N+   + + D   ++   N
Sbjct: 208 RRSDRLGRAMNS-----LAVDLMEMTRTQDMQRDRLLTVIENIGSGLILIDGRGFINLVN 262

Query: 333 RSFVELWEIDLAFLATNPSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           RS+ + +      L     +D      +  L     + E    +  +  I    +  E  
Sbjct: 263 RSYTKQFHTKPERLLRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVD 322

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
                 P+ +            G + +F ++T    LE 
Sbjct: 323 GVPIMGPDDEWK----------GIVLVFHDMTEIKKLEQ 351


>gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 919

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 111/655 (16%), Positives = 229/655 (34%), Gaps = 75/655 (11%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEEIK 249
            + + + L++    ++   D  G +L  N  +++        V  ++ G+          
Sbjct: 12  SLELVRSLYEKAPVMLHSLDGQGRLLSVNAMWRQTLGYGLDTVVGRSFGDFMTPASRADF 71

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--------GIAIDVSKEITV 301
           +  +     +    +    L   + +  +++       +            +DV+     
Sbjct: 72  EATMPRFVRDGRLTDKPYQLVASDGRVVEVLLSAVGEYDVTGDFRRSLAALVDVTGRRQA 131

Query: 302 NDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
            + L  + E+      N    +AI   +      N++    +  +   L        + +
Sbjct: 132 EEALAKSEELFRLAFENANEGLAIVGLDGQFLRVNKALCRFFGYEAEALLGK----TVGD 187

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETH-----KDTWHLPNGQTLHVIVTSNPRGGT 412
                ++             +   ++  + +     ++ W    GQ    +V S+     
Sbjct: 188 LAAEGHEAVSPRFISLALAGVREEFRFEKRYRHALGEEVW----GQVSAKLVRSSGGEPL 243

Query: 413 IWMFE--NLTVQVDLETKYN----------TLVKVQGETIDHLSE-----GVAVFGPD-G 454
            ++    ++T       +             L +++G  +  L E     GVA+     G
Sbjct: 244 YFISHLLDVTEARRTAARLTLHANTLEALLRLGRMRGANLAALGEFVLSRGVALTASQSG 303

Query: 455 RIKLSNPA----------------FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
              +S+PA                F     T E  L     +           +++    
Sbjct: 304 LAAMSDPATGRFAVLAAGSEALAVFGLGEGTREFELRDSPSLAMAVGDLRPVVSDTPCSR 363

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L  A+         ++ G      D   + + + L     +          R E  LT  
Sbjct: 364 LATALRGDGQTFILAVAGRAMPYGDD--DINRLTLLGEGVL----RHVKERRREEDLTTA 417

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                 A + K+ F+ ++S+E+R+PL+ IIG T +   +   +   +  + +E I  SS 
Sbjct: 418 RRQAEAASQAKSGFLANMSHEIRTPLSGIIGLTQM---TLTQNPRPEIRENLELILDSSR 474

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +VNDILD + ++AG M+       L D L+   +S      +  + + V  D ++ 
Sbjct: 475 SLLGIVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQKGLTLGVRIDPQVP 534

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF--SVKNNGSSIPEDM 734
           + V  D  R++Q+   ++ NA+ F+ +G   V L  AR     +   SV++ G  IPED 
Sbjct: 535 AMVHGDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLARPGDPMLVSCSVRDTGIGIPEDR 594

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              +F  F         +  G GLGL+I    + + GG + + S     +T    
Sbjct: 595 LHELFQVFSQLESTRAKRYGGTGLGLAISRRLVEMMGGAIDVESVPGQGSTFTFT 649



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 81/258 (31%), Gaps = 17/258 (6%)

Query: 73  HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132
            SL  +   +    DG+     +     Q +          SF +++             
Sbjct: 17  RSLYEKAPVMLHSLDGQGRLLSVNAMWRQTLGYGLDTVVGRSFGDFMTPASRADFEATMP 76

Query: 133 KLRKEGQ----SFDLVAETQNDCAIKIEGRVSGS-CAFLRILSLDGIYSELAETTLKCKK 187
           +  ++G+     + LVA   +   +++     G                ++       + 
Sbjct: 77  RFVRDGRLTDKPYQLVA--SDGRVVEVLLSAVGEYDVTGDFRRSLAALVDVTGRRQAEEA 134

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG-IVFQKAIGESRKLFKE 246
           L+    +F++ F++ +  +      G  L  N +  +    E   +  K +G+      E
Sbjct: 135 LAKSEELFRLAFENANEGLAIVGLDGQFLRVNKALCRFFGYEAEALLGKTVGDLAAEGHE 194

Query: 247 EIKKRMIS---SSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFGE----AGIAIDVSK 297
            +  R IS   +   E+   E       G     ++    V +S GE        +DV++
Sbjct: 195 AVSPRFISLALAGVREEFRFEKRYRHALGEEVWGQVSAKLVRSSGGEPLYFISHLLDVTE 254

Query: 298 EITVNDQLTHTYEILHNL 315
                 +LT     L  L
Sbjct: 255 ARRTAARLTLHANTLEAL 272


>gi|254444470|ref|ZP_05057946.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258778|gb|EDY83086.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1323

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 133/709 (18%), Positives = 265/709 (37%), Gaps = 55/709 (7%)

Query: 131 TEKLRKEGQSFD--LVAETQNDCAIKIEGRVSGSCAFLRIL--SLDGIYSELAETTLKCK 186
            E+  + G+ FD  L   TQ      +  R  G    +      + G++ ++ +     +
Sbjct: 216 VERTTRTGEPFDDELQIRTQEGRLKWV--RTIGQAEMVDSQCVRVFGVFQDIDDDRRMRE 273

Query: 187 KLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANISYKKNT----------------ETE 229
           +   + ++ + L DS+ +F V   D  G I   N   +K                    E
Sbjct: 274 QSERNSALLRSLVDSVTEFSVIATDDDGVITLFNAGAEKLLGYEASEVVGLKKAAIFHME 333

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS---- 285
             V  +++  S++L ++    +   + +L +   +   T    + +   ++ V+      
Sbjct: 334 SEVEARSVELSKELGEDVSGFQTFVAKSLREGAEQREWTYIRKDGERIPVILVVTPMRGD 393

Query: 286 ----FGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                G  GIA D+S     E  + +  +          + +AI          N++ ++
Sbjct: 394 TGVKSGFLGIARDISARKRAENDLRESESRFRRSFEYSGIGMAIVSLEGKWIQVNQALLD 453

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           + E     L          E     +   +    K   +     Y   + + D+      
Sbjct: 454 MLEYKREELL----ELSFQEITHPDDLDADLALLKETLDGKRQSYALEKRYFDSKGKIKW 509

Query: 398 QTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
             L+V +  + +G     +   +++T +  L+       +      +    G+  +    
Sbjct: 510 VNLNVSLVRDWKGEPVHFVSQIQDVTERHLLDEDLKQARERLLLATEAGKIGIWDWDAAT 569

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
              L +     L+  E+                  +           A  T +D+E + +
Sbjct: 570 DTLLWDDQMLRLFGYEKEEFKTPFDAWYNGVHPDDFPELEKKRLAAIAGETQYDEEFRIV 629

Query: 515 QGTLELLSDSVLEYSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
             + E+ +   L    +       + +    +VT++V     L         A+  K+ F
Sbjct: 630 LPSGEIRTLKTLAIVQMDEFGKAKRMVGINWDVTEAVVQREELARLAAEADDANRAKSQF 689

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  +IG T LL  S    LNS+QS+    I +S   LL L+NDILD + 
Sbjct: 690 LANMSHEIRTPINGVIGMTSLLLDSP--GLNSEQSKQARVIQSSGEALLALINDILDFSK 747

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
           V+AG + L      L D L+++   +  +  E  +     +D ++      D  RL QI 
Sbjct: 748 VEAGKLDLEILDFDLRDTLDDLSLLLGQRAGEKQLEFICKADNQVPDRLRGDPGRLRQIL 807

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +  NA+ F++ GS  +L +  D  +      FSV + G  I E+  + +F+ F     
Sbjct: 808 INLAGNAIKFTANGSVKVLVSLADRDEKTALLRFSVIDTGIGISEEKKRLLFSEFTQADS 867

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPSKE 792
              R   G GLGL+I +  +NL  G + ++S     +      R+P +E
Sbjct: 868 STTRLYGGTGLGLAISKQLVNLMDGEIGVTSEKGSGSEFWFTARLPYEE 916



 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 30/285 (10%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
               +   E L +  + +A+ +    + + N  F  + +     L            + +
Sbjct: 24  KATASALLETLDDHAI-VAVTNPRGIITYVNDQFCAISQYSREELMGKTH------RVVN 76

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSET---HKDTWHLPNGQTLHVIVTSNPRGGTIWMFE- 417
           +   PE    K W +         +     K         T+H ++           F  
Sbjct: 77  SGYHPEVFWKKVWADISSGATWKGQICNRAKFGGLYWLQTTIHPVLDERGEIEQYVAFRT 136

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSP 476
           ++T Q  +E K         ET      G   +   D ++        S     +     
Sbjct: 137 DITEQKQVENKLRNSQMHLQETARLAKVGSWEWDLIDQKL--------SWSWMTKVIHEV 188

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITS-------FDDE--RKSLQGTLELLSDSVLE 527
           G        +   +Y E +  +   +++         FDDE   ++ +G L+ +  ++ +
Sbjct: 189 GPDYEPDLDSAIAFYPEGEMRNRINSLVERTTRTGEPFDDELQIRTQEGRLKWVR-TIGQ 247

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
             ++     +    F ++ D  R        +  LR   +    F
Sbjct: 248 AEMVDSQCVRVFGVFQDIDDDRRMREQSERNSALLRSLVDSVTEF 292


>gi|163739314|ref|ZP_02146725.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
 gi|161387384|gb|EDQ11742.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
          Length = 764

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 187/449 (41%), Gaps = 24/449 (5%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSNPRGGTIWMFENLT 420
           A++L E+   +   E +  + ++  +  +      G+  L +          +    +  
Sbjct: 4   ADRLTEERRARLAAERLLELKQAELSAAN---RKLGRHALALTRQIGATQAEVATVRDEN 60

Query: 421 VQVD-----LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +V         K     +    +I    +G A F  D ++  +N A+  L+   E    
Sbjct: 61  AKVKSDLSTANEKVERAERRLWHSIQAFQDGFAFFDADSKLIGANTAYLDLFDGLEEVTP 120

Query: 476 PGTHIRNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             +++R +                D + A ++            + +  D  L       
Sbjct: 121 GVSYVRILQILTDEGLVNTGEQDPDHWRAQMSERWLSPSPEPVVVRMWDDRYLRLLDQRG 180

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +   +++T +V+ E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +L
Sbjct: 181 HGGDMVSLALDITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAEL 240

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +   +L+ +Q  Y   I  S   LL ++ND+LD + ++A  ++L+     L   ++E
Sbjct: 241 LSDT---NLSDEQQLYANTIKNSGEALLVIINDVLDYSKIEAQKLELHPEPFDLERSVHE 297

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILK 711
           V   +     +  + + +  D  L + FV D  R+ Q+ + ++ NA+ F+S+G   + + 
Sbjct: 298 VLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTSEGHVALQIT 357

Query: 712 AARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
              + GD       ++++ G  IPE+  + +F  F  V +    Q  G GLGL+I +  I
Sbjct: 358 GISNAGDKICSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAISKRLI 417

Query: 766 NLHGGHVSISSSDEGVTTINCR--IPSKE 792
            L GG + + S +   +    R  +P  E
Sbjct: 418 ELMGGEIWVESQEGKGSCFGFRMELPLAE 446



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 64/201 (31%), Gaps = 12/201 (5%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR-VLNSFGEAGIAID----- 294
                EE + R+ +   LE    E  +        +  + R +  +  E     D     
Sbjct: 4   ADRLTEERRARLAAERLLELKQAELSAANRKLGRHALALTRQIGATQAEVATVRDENAKV 63

Query: 295 ----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
                +    V       +  +       A FD +  L   N ++++L++  L  +    
Sbjct: 64  KSDLSTANEKVERAERRLWHSIQAFQDGFAFFDADSKLIGANTAYLDLFD-GLEEVTPGV 122

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           S   +L+ L     +   + +   W+  +   + S         + + + L ++      
Sbjct: 123 SYVRILQILTDEGLVNTGEQDPDHWRAQMSERWLSPSPEPVVVRMWDDRYLRLLDQRGHG 182

Query: 410 GGTIWMFENLTVQVDLETKYN 430
           G  + +  ++T  V  E +  
Sbjct: 183 GDMVSLALDITSTVQYEEELQ 203



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 55/176 (31%), Gaps = 22/176 (12%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--- 209
           +    R  G  A      +    +E+A    +  K+ + +S      +  +  +WH    
Sbjct: 28  LSAANRKLGRHALALTRQIGATQAEVATVRDENAKVKSDLSTANEKVERAERRLWHSIQA 87

Query: 210 --------DQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
                   D    ++ AN +Y    +  E +    +     ++  +E             
Sbjct: 88  FQDGFAFFDADSKLIGANTAYLDLFDGLEEVTPGVSYVRILQILTDEGLVNTGEQDPDHW 147

Query: 261 NFCETVST---------LEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLT 306
               +            +   +++  +++      G+   +A+D++  +   ++L 
Sbjct: 148 RAQMSERWLSPSPEPVVVRMWDDRYLRLLDQRGHGGDMVSLALDITSTVQYEEELQ 203


>gi|308174604|ref|YP_003921309.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607468|emb|CBI43839.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 579

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 148/371 (39%), Gaps = 27/371 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++    +         I+++  G+ +    G I L N ++   + T+  RL        
Sbjct: 225 MEMTRTQDMQRDRLLTVIENIGSGLILIDGRGFINLVNRSYTKQFHTKPERL-------- 276

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSVLEYSIIPLPNAQTM 539
                 R Y+++   +    ++             L L   +     E   +P+      
Sbjct: 277 ----LRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVDGVPI------ 326

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +   D  +    +      ++K ++I+  FV +VS+EL++P+T+I GFT+ L    +
Sbjct: 327 ---MGPDDEWKGIVLVFHDMTEIKKLEQIRKDFVANVSHELKTPITSIKGFTETLLDGAM 383

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              +   S ++  I   S  L +LV D+LDL+ ++     +   +     +L+E++  + 
Sbjct: 384 KD-DKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLQ 442

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E  I  ++    +      D  RL Q+F  + +NA+ ++ +  TV +         
Sbjct: 443 HKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFLNLANNALTYTPEKGTVGISVNVKETVV 502

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I ++    +F RF            G GLGL+IV+  I  H GH+ ++S 
Sbjct: 503 DIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGHIEVTSE 562

Query: 778 DEGVTTINCRI 788
               T     +
Sbjct: 563 PGQGTVFTVTL 573



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
            +S ++ R +NS     +A+D+ +     D Q      ++ N+   + + D   ++   N
Sbjct: 208 RRSDRLGRAMNS-----LAVDLMEMTRTQDMQRDRLLTVIENIGSGLILIDGRGFINLVN 262

Query: 333 RSFVELWEIDLAFLATNPSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           RS+ + +      L     +D      +  L     + E    +  +  I    +  E  
Sbjct: 263 RSYTKQFHTKPERLLRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVD 322

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
                 P+ +            G + +F ++T    LE 
Sbjct: 323 GVPIMGPDDEWK----------GIVLVFHDMTEIKKLEQ 351


>gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1083

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 127/262 (48%), Gaps = 12/262 (4%)

Query: 536 AQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           A+ + +F+N  +    ER   L    EA   A+  K+ F+ ++S+E+R+PL  I+GF  +
Sbjct: 412 AEELCSFINNLEEKVKERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSI 471

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ +    L+S Q  Y+E I  SS  LL ++NDILD++ ++AG M++      +  ++  
Sbjct: 472 LEKT---DLDSTQQDYIETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIES 528

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK 711
                  K  E  + + ++ +  +    V D  ++ QI S ++SNA+ F+  G   + + 
Sbjct: 529 TIFLYDAKAREKGLELNMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTHNGEVFIEVS 588

Query: 712 AARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             ++        F +++ G  + E+    +F  F        R   G GLGL+I +  + 
Sbjct: 589 VIKETNTEVQLYFEIRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAICKKIVE 648

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           + GG +S+ S     TT    +
Sbjct: 649 MMGGTISVKSVKNRGTTFCFDL 670


>gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 589

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 174/392 (44%), Gaps = 27/392 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q++      N   +     +  +++GV     DG I ++NP
Sbjct: 221 ILTQDEIGELATAFNQMGRQLNFHINALNQEKEQLSNILSSMADGVITINIDGTILVTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +      +            +  +LF   +++  ++ + ++ TL+  
Sbjct: 281 PAERFLQAWYYEQNMNIKEGDNLP--------PEAKELFQNAVST--EKEQMIEMTLQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S  +L   + PL     +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 SWVLL---MSPLYAESHVRGAVAVLRDMTEERRL----------DKLREDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +    + S    + +  + I   S  +  LVND+LDLA +++G   L+
Sbjct: 378 TPISMLQGYSEAIVDD-IASSEEDRKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLH 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y  + +N+ L ++ +  +    E NI +          F+ D  ++ Q+F+ ++ NA+  
Sbjct: 437 YEKVNVNEFLEKIIRKFSGVAKEKNITLHQDISLTEEEFMFDEDKMEQVFTNLIDNALRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +S   +V +            +K++GS IPE+    +F RF        R   G GLGL+
Sbjct: 497 TSSEGSVSIAVHSVKDGLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV++ +  H G +++ S  +  TT    IP+K
Sbjct: 557 IVKNIVEAHNGSITVHSRMDKGTTFTFYIPTK 588


>gi|78357969|ref|YP_389418.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220374|gb|ABB39723.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 606

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 30/385 (7%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +      E +     ++  + +  + + + V   DG +  SN                G 
Sbjct: 83  ILRLRQREKELLHERQMLKDILKAIPDMLTVHDRDGNVMFSNCKPNEDCWQHHGGTKHGL 142

Query: 479 HIRNIAATCSRYYNESDGWDLF----AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                     R   +    D+F      ++  ++ + KS +             ++ P+ 
Sbjct: 143 RCYQCHFHGDRNCEDCYIPDVFDSGEQRVVEMYNPDMKSFR-----------SITVFPVR 191

Query: 535 NAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + Q  +T       +VT +   ER L    EA   AD  K+ F+  +S+E+R+P+  ++G
Sbjct: 192 DGQGDVTMVAEYVRDVTATRNLERELRVAKEAAEAADRAKSEFLASMSHEIRTPMNGVLG 251

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             DL  T+   SL+ +Q +Y+E +  S+  LL+L+NDILD + ++AG+++L+     L+ 
Sbjct: 252 MLDLAMTT---SLDEEQREYLEAVQNSAEALLSLINDILDFSKIEAGMVELDQQVFRLSK 308

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+ +      +  E N+   +     +      D  RL QI   +L NA  F+ +G  V
Sbjct: 309 RLSSLHTMFVHRAAERNLEFAINISPDVPDGLSGDPLRLRQIVVNLLDNAFKFTDQGQVV 368

Query: 709 ----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
               +L+   +N    FSV++ G  I E   + +F+ F         + +G GLGL+I +
Sbjct: 369 LSVEVLERGAENVLLQFSVQDTGPGILERHQERIFDSFAQADASFTRRHQGSGLGLAICK 428

Query: 763 SFINLHGGHVSISSSDEGVTTINCR 787
               L GG + + S+    +T    
Sbjct: 429 RLTGLMGGDIKVRSTPGEGSTFVFS 453


>gi|156934002|ref|YP_001437918.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532256|gb|ABU77082.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894]
          Length = 893

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 209/480 (43%), Gaps = 15/480 (3%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           ++D++  L   N      +    A L    +   L +    A    +  +  T   ++ +
Sbjct: 19  VYDKDERLVAWNAQVSRFYPGIEAHLVEGAALSALAQSFIHAGYQTDSRSRDTLVASLIA 78

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             +    H +   L   + L +       GG I +  +++   +++     L        
Sbjct: 79  NCRHDG-HCEVRQLQQ-RRLFIQHQRTADGGIISLHTDISALDNVQNTRQLLHDDFLPAA 136

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDL 499
           + +  G+  +         N AF +L      +L   +H + ++     R   +S     
Sbjct: 137 ESIHIGIWDWQVTTDALHLNDAFLNLLGEPRGQLQHTSHFLLSLIHPDDRDLLKSAMQCA 196

Query: 500 FAAIITSFDDERKSLQGTLE----LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
               +  F+ E +    + +    LLS  ++  ++      + + T  ++T    AE   
Sbjct: 197 SEHQMPVFECEIRVQHRSGQWLWMLLSGQIIALTVTG-EIERLIGTLQDITRRKEAELIS 255

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E   A R A+E K++F+ ++S+E+R+P+  I+G T L   +    LNS+Q +Y+  + +
Sbjct: 256 REAANAARAANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT---DLNSEQREYLTLVMS 312

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  LL++++DILD + ++AG + L+   + L   +  + + +     E  I + V  D 
Sbjct: 313 SAQSLLHIIDDILDFSKIEAGKIVLHEEYVALRPFIQSLVRPLMPLASEKQIELLVEVDE 372

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPED 733
           ++  +   D  RL Q+ + +LSNA+ F+ +G  ++ +      G++ F V+++G  IP +
Sbjct: 373 RVPQTLRVDVVRLRQVLTNLLSNALKFTHQGEILLAVAPGPQPGEWRFRVRDSGIGIPPE 432

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +F  F        RR  G GLGL+I    + + GG ++++S     +  +  +P +
Sbjct: 433 KQQVIFEAFSQADTSTTRRYGGTGLGLTISARLVAMMGGLLTVASEANQGSEFSFTLPLQ 492



 Score = 37.6 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 62/191 (32%), Gaps = 12/191 (6%)

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
               +  +++S              +    + +   +     G   +  D+S    V + 
Sbjct: 65  DSRSRDTLVASLIANCRHDGHCEVRQLQQRRLFIQHQRTADGGIISLHTDISALDNVQNT 124

Query: 305 LTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
               ++       ++ + I  +         N +F+ L       L    ++  LL  + 
Sbjct: 125 RQLLHDDFLPAAESIHIGIWDWQVTTDALHLNDAFLNLLGEPRGQL--QHTSHFLLSLIH 182

Query: 361 SANKLPEQLNWKTWKENIFSVYK-----SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++   +   +   E+   V++        + +  W L +GQ + + VT       I  
Sbjct: 183 PDDRDLLKSAMQCASEHQMPVFECEIRVQHRSGQWLWMLLSGQIIALTVTGEIE-RLIGT 241

Query: 416 FENLTVQVDLE 426
            +++T + + E
Sbjct: 242 LQDITRRKEAE 252


>gi|119900234|ref|YP_935447.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672647|emb|CAL96561.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1064

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 161/378 (42%), Gaps = 18/378 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T +    +       +    ID + E   +     R+ L N  +R L+    + L PGT 
Sbjct: 271 TERERAASALQRSEGILRAAIDAIDEAFIICDEQDRLLLCNDRYRELFALTADLLVPGTP 330

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQ 537
              I           +      A +       ++     E  + S   L       P   
Sbjct: 331 FERILRASVARGQFPEAVGREQAWLADAMARHQAGTEARETCIASGRWLRVVDRRTPAGH 390

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   V+VTD       L E   A   A++ K+ FV ++S+E+R+P+  ++G T+LL T+
Sbjct: 391 IVGFRVDVTD-------LHEARAAAEAANQAKSLFVANMSHEIRTPMNGVLGMTELLLTT 443

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+ +Q  + E    S+  LL ++NDILD + +DAG + +      L+ +LNE+   
Sbjct: 444 E---LDDEQRDFAETARHSAQALLGILNDILDFSKIDAGKLDIETIDFDLHGVLNEISSL 500

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +A +  E  I      +  L +    D  RL Q+   ++ NA+ F+  G  V+     D 
Sbjct: 501 LALRAEEKGIEFICRVEPSLPARLRGDPGRLRQVLLNLVGNAIKFTDHGEVVVSVGVEDR 560

Query: 717 GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           G+     F ++++G  IP +   ++F+ F        RR  G GLGLSI +  + L GG 
Sbjct: 561 GEPLRVRFEIRDSGIGIPAETLPALFSPFTQAEGSTSRRFGGTGLGLSISKRLVELMGGE 620

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     +T    +P
Sbjct: 621 IGVRSQPGVGSTFWLALP 638



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 73/209 (34%), Gaps = 9/209 (4%)

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
              ++         +E++  E +  +         +V  L +  EA      ++      
Sbjct: 222 LTRDVGTITAGVRRIEQDLGERLPAMTGETGAIAHVVNTLAASLEAA---RRTERERAAS 278

Query: 304 QLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            L  +  IL      +  A  I D+   L   N  + EL+ +    L      + +L   
Sbjct: 279 ALQRSEGILRAAIDAIDEAFIICDEQDRLLLCNDRYRELFALTADLLVPGTPFERILRAS 338

Query: 360 RSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
            +  + PE +  +  W  +  + +++    ++T  + +G+ L V+    P G  +    +
Sbjct: 339 VARGQFPEAVGREQAWLADAMARHQAGTEARET-CIASGRWLRVVDRRTPAGHIVGFRVD 397

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +T   +         + +   + ++S  +
Sbjct: 398 VTDLHEARAAAEAANQAKSLFVANMSHEI 426



 Score = 41.5 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 45/160 (28%), Gaps = 12/160 (7%)

Query: 150 DCAIKIEGRVSGSCA-FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
              +      +G+ A  +  L+     +   E       L     + +   D++D     
Sbjct: 241 GERLPAMTGETGAIAHVVNTLAASLEAARRTERERAASALQRSEGILRAAIDAIDEAFII 300

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
            D+   +L  N  Y++       +        R L     + +   +   E+ +      
Sbjct: 301 CDEQDRLLLCNDRYRELFALTADLLVPGTPFERILRASVARGQFPEAVGREQAWLADAMA 360

Query: 269 LEH----------GNNKSYKIVRVLNSFGE-AGIAIDVSK 297
                         + +  ++V      G   G  +DV+ 
Sbjct: 361 RHQAGTEARETCIASGRWLRVVDRRTPAGHIVGFRVDVTD 400


>gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 467

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 26/358 (7%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             +  +S+GV      GR+ L NP    L++           +R I             +
Sbjct: 123 AILSSMSDGVIAMDAWGRMILINPVVEELFRITMAASRGKNILRVI-----------RNY 171

Query: 498 DLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           DL   +  + +  R  +Q  +++L+    V +  +IPL N+      V        ER +
Sbjct: 172 DLEKLLNQALETGR-CMQKQIQILAPEPRVFQVHVIPLQNSGAERGGVVALLRDITERKI 230

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +         E+++ FV +VS+ELR+PLT+I GF + L    L   ++   +++E I++
Sbjct: 231 LQ---------EMRSEFVANVSHELRTPLTSIRGFAETLLDGALEEPDT-ARRFLEIINS 280

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  L++++L+L+ +++         + + +L+      +  +  E N+ IK+    
Sbjct: 281 ETERLSRLIDELLNLSRLESHKWVPKRQPVNMGELIKRAVAILQPRAVEKNLAIKINLPE 340

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L     D   L Q+   ++ NA+ ++  G  V + AA    +    VK+NG  IP +  
Sbjct: 341 DLPVVQGDPDMLSQVLLNLIENAVVYTQAGGEVSISAAATQDEMKVDVKDNGIGIPPESL 400

Query: 736 KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             VF RF         ++ G GLGLSIV+  I+ H G V + S     +T +  IP +
Sbjct: 401 SRVFERFYRVDKARSREQGGTGLGLSIVKHIIDAHRGSVQVESKVGIGSTFSFVIPLE 458



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 17/138 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V  +      IL +++  +   D    +   N    EL+ I +A          +L  
Sbjct: 112 EDVIAEKNRIKAILSSMSDGVIAMDAWGRMILINPVVEELFRITMAASRGK----NILRV 167

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTI 413
           +R+        + +          +  +        P  +   V V         RGG +
Sbjct: 168 IRN-------YDLEKLLNQALETGRCMQKQIQILA-PEPRVFQVHVIPLQNSGAERGGVV 219

Query: 414 WMFENLTVQVDLETKYNT 431
            +  ++T +  L+   + 
Sbjct: 220 ALLRDITERKILQEMRSE 237


>gi|66046171|ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63256878|gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1353

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 135/740 (18%), Positives = 267/740 (36%), Gaps = 96/740 (12%)

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
           ++G  F +      D  ++  G    S    R  +L  + S  A  +     L ++    
Sbjct: 141 RQGDRFIIQFIDPLDRNVQALGLDITSEEHRRDAALQAMRSGAATLSAPITLLQDNDDHM 200

Query: 196 KVLFDSLDF------LVWHRDQAGDIL-WANI--SYKKNTETEGIVFQKA------IGES 240
           +     L              +   ++ W     + ++       +  +       + E 
Sbjct: 201 RAFLFLLPVYSTPEIPTDIAQRETSLIGWTYAPLAMREVMSNLDPLNHRLHLKLYDVNEG 260

Query: 241 RKLF----KEEIKKRMISSSALEKNFCETVSTLEHGNNKSY----------------KIV 280
           R+L     + +  + ++ + A E+     V  +E G + ++                 +V
Sbjct: 261 RQLIYQTPENDHDQEVLQTYAFEREIYGRVWRMEVGAHPAFIAALDPVPAGRVFIIGTLV 320

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
            ++ +     + +   ++  V         I+ N + AI     +  +   NR+  +++ 
Sbjct: 321 SLMLTVLVGTLLLSRQRKQQVVAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFG 380

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
            D   +   P        L      PE ++         +  +   T +      NGQ +
Sbjct: 381 YDEHEVLGRP--------LAPLLVPPELVHEDEQLLERVARGERGPTLETRRLHKNGQLI 432

Query: 401 HVIVT----SNPRG---GTIWMFENLTVQVDLET---KYNTLVKVQ-------------- 436
            V +T        G   G   M  ++T +  +E    ++N  ++ Q              
Sbjct: 433 DVTITCSFIRETDGTLLGAAKMMHDITDRKRVERYLMEFNAQLEQQVSERTAELSRVAGL 492

Query: 437 -GETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG------THIRNIAATCS 488
               +D  SE  +      G+I + N     L     + +  G           +AA  +
Sbjct: 493 LQGVLDASSEVSIIATDTQGQIFVFNRGAELLLGYSNSEMLSGNGPGVFHLPEEVAARSA 552

Query: 489 RYYNE----SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
               E     +G D+F    +    E +      +  +   +   I P+  A   L    
Sbjct: 553 ELSREYGTLIEGIDVFCYKASREGSETRQWTYVRKDGTTVPVLMIITPIRTADGELIGHL 612

Query: 545 VTDSVRAER-----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                  ER      L     +   A+  K+ F+ ++S+E+R+P+  +IG + LL  +  
Sbjct: 613 GIAQDITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNT-- 670

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +LN +Q Q +  +  +   LL ++NDILD+A ++AG M+L ++      LL+E+ +   
Sbjct: 671 -ALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFT 729

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +  E  +R  V     L    + D  R+ QI   ++ NA+ F+S G  V +  +R++  
Sbjct: 730 PQAQEKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGG-VDVTVSREDDH 788

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  FSV++ G  IP D+   +F+ F        RR  G GLGLS+V       GG 
Sbjct: 789 ADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGR 848

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S     +     +P +
Sbjct: 849 IGVESELGTGSEFWVELPFQ 868


>gi|87118404|ref|ZP_01074303.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
 gi|86166038|gb|EAQ67304.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
          Length = 1317

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 121/667 (18%), Positives = 246/667 (36%), Gaps = 75/667 (11%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           + +++         +  S++  +   D    I+  N +        G   ++A+G     
Sbjct: 346 RRRQVVRQSIKLDSILSSVNEAIISLDTEDCIISWNPAAALLF---GYSEEEALGRFFPG 402

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKS---------YKIVRVLN----SFGEAG 290
                 K        +         +     +            +  +L+    S G   
Sbjct: 403 LVLPDDKWAEYDMGKDFISKGQSYNILDTQRRHKEGHLLSLGLHVTPMLDKNKRSMGVTI 462

Query: 291 IAIDVSKEITVNDQLTHTYE----------------------ILHNLTVAIAIFDQNRYL 328
            A+D+S        L  + E                      IL++   A+   D    +
Sbjct: 463 AAVDISHVKRTEKALQRSNEELEEVVKLRTEQMKSVLNLQSGILNSTAFAVIATDLEGLV 522

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA-----------------NKLPEQLNW 371
            F N +   L++ + A +   P +    + L  A                   + ++L  
Sbjct: 523 TFINPATKYLFQFNEADVIAKPDSLFFADELGDAYPPLYQQGSQLARYMKRTLIEQELID 582

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETK 428
           +  ++      +     KD        +L V +  N +G   G + +  +LT Q  LE  
Sbjct: 583 RNRQQVNHEDQERIFIRKDLSRFAG--SLSVSLIHNDQGESMGYLAIVTDLTRQKYLE-- 638

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                +++  + +  S+ V      G +   N A       +   L  G  + +I    S
Sbjct: 639 --FEWQLEKVSTESTSDAVLWMDDVGAMIKVNQAACDALGVKSQVLL-GRKLFDIFPDHS 695

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTD 547
             +      +L       FD    ++ G    +S   +  ++I L   + +     ++ D
Sbjct: 696 YSWWRPYQIELQQYKKVWFDTSFHNVHGEEVHVS---VNANLIYLDGKEYVHLVARDIND 752

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            ++ E  L    E    A E K+ F+ ++S+ELR+P+  +IG  +L+K +   SL+  QS
Sbjct: 753 RLKKEHELATAKERADIASEAKSHFLANMSHELRTPMNAVIGLLELVKKT---SLSPVQS 809

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +++    ++  LL ++NDILD + ++A  M +      L+ L++E+   ++  +   +I
Sbjct: 810 DFIDKTQVAAHSLLKILNDILDFSKIEANSMLVEKHEFQLSSLIDEMALILSASLTTKDI 869

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            +    D  L  +   D  +L QI   + SNA+ F+ KG  +I        +    V+++
Sbjct: 870 EVLFDIDDNLPETIQTDALKLKQILLNLGSNAIKFTQKGHVLISIKMLSENEISMCVEDS 929

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +  +  + +F  F        RR  G GLGL+I +  I L  G + + S     T+ 
Sbjct: 930 GIGMNPEQLEHIFTDFKQAEASINRRFGGTGLGLAITKKLIELMDGSIRVESHLGKGTSF 989

Query: 785 NCRIPSK 791
           + ++P +
Sbjct: 990 HVQLPLE 996


>gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 848

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 165/382 (43%), Gaps = 24/382 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHI 480
           ++  E  +  + +     +D  S+ + V   D RI+  NP   SL     E+ L  G  +
Sbjct: 223 RLVAERAFQQVQQEYKTLMDSASDLILVHDRDLRIRYVNPVVESLAGQPPEHYLGQGIEV 282

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA---- 536
                  +  +N          ++ S  D   S Q    +     ++  + P+ +A    
Sbjct: 283 IIPEREVAGVFNSH-----LRQVLQSGKDSSISFQLD-SVRHKRHMQARLTPVQDAAGSM 336

Query: 537 -QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +    ++T   R E  L +      +++  K+ F+ ++S+E+R+PL  ++G  + L 
Sbjct: 337 GSVLAVVRDITRFKRLEDRLRQAKREAEESNRAKSEFLANMSHEIRTPLNAVLGLAERLS 396

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +   ++ +YV  I  S+  LL +++DILDL+ ++AG + ++     L  LL +V 
Sbjct: 397 ---FITEPRERDEYVRMIKHSAHALLAIIDDILDLSKIEAGKLDVHEQEFELAALLEKVV 453

Query: 656 QSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                +  E  + + V   +      +AD  +  Q+ + ++SNA+ F+ +GS V +    
Sbjct: 454 SPYRYQAQEKGLELAVSVGNAVPAWMLADPDKFSQVLTNLVSNAIKFTEEGS-VEISVTN 512

Query: 715 DNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           DN D      +  V + G  IP DM   +FN F            G GLGL+I +  + +
Sbjct: 513 DNRDSRDMGLLVCVHDTGLGIPWDMQARLFNSFSQLDSSYSKSFGGTGLGLAISKRLVEM 572

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG + + S     ++ +  +P
Sbjct: 573 LGGRIWVESMPGKGSSFSFTLP 594



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 64/196 (32%), Gaps = 19/196 (9%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
           + S + L       V        +  ++  V  +         V++      Q      +
Sbjct: 182 VESMAGLATLGLRHVDLRAEAERRFSELEAVRGAVERESAGRLVAERAFQQVQ-QEYKTL 240

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           + + +  I + D++  +++ N     L        A  P    L + +     +PE+   
Sbjct: 241 MDSASDLILVHDRDLRIRYVNPVVESL--------AGQPPEHYLGQGI--EVIIPEREVA 290

Query: 372 KTWKENIFSVYKSSETHKDTWHL---PNGQTLHVIVTSNPR-----GGTIWMFENLTVQV 423
             +  ++  V +S +    ++ L    + + +   +T         G  + +  ++T   
Sbjct: 291 GVFNSHLRQVLQSGKDSSISFQLDSVRHKRHMQARLTPVQDAAGSMGSVLAVVRDITRFK 350

Query: 424 DLETKYNTLVKVQGET 439
            LE +     +   E+
Sbjct: 351 RLEDRLRQAKREAEES 366


>gi|303248550|ref|ZP_07334807.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490080|gb|EFL50001.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 695

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 125/679 (18%), Positives = 236/679 (34%), Gaps = 95/679 (13%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--EGIVFQKAIGESRKLFKEEIKK 250
           S+   L+++   +V   D  G +   N S  +      E  V       +      +  +
Sbjct: 18  SMLAALWEAAGDIVVVIDAVGRLAAINESGLRLLGQTREQAVGSDWFDLALPPKDNDNAR 77

Query: 251 RMISS------SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI----AIDVSK--- 297
            +  +      S  +    +T+ T        + +  +    G+  +      DV     
Sbjct: 78  ILHRALLDGELSPKDLTQNQTIRTALGWRRLRWGLGLIDGPDGQPAMVLACGRDVDAQSQ 137

Query: 298 -EITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            E  V ++     +IL     AI I D     +   N   V L+   +         DEL
Sbjct: 138 LEAAVREKEAEYRDILDAANDAIFIQDPATGQILDANERAVSLYGYGV---------DEL 188

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVT-----SNP 408
                         +            +  +     W   +  G+     V         
Sbjct: 189 RRITPDGLSAGTPPHTGAAALAKLDQARRGQPQLFEWLARDKTGRLFWTEVNLRHAVVRG 248

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLW 467
           +   I +  ++T + + E       K   +  + + E   +  PD  RI   +PA+ +LW
Sbjct: 249 QDRIIAVVRDITERKNAERALRESEKKFRQLAETIGEVFWLASPDVKRIFYVSPAYETLW 308

Query: 468 KTEENRLS----------PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-------- 509
                 L                  +    +R  +      +F       DD        
Sbjct: 309 GRPPVSLYASPQSWLDSVHPEDRDKVLDHMTRLASGPPARGIFPDFRVVRDDGSVRWVQA 368

Query: 510 ----------ERKSLQGTLELLSDSV-----LEYSIIPLPN-----AQTMLTF-----VN 544
                         L GTLE ++D V     LE     L +      QT+          
Sbjct: 369 RYFPVIGDSGGVSRLAGTLEDITDRVQTRLELERVNERLEDMVRKRTQTLNRMNEELIHE 428

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V +   AE ++    EA   A   K++F+ ++S+E+R+P+  I+G   +L  +    L+ 
Sbjct: 429 VLERREAEASMARAKEAAEAASRAKSAFLANISHEIRTPMNGILGMAQILGQT---GLSD 485

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q ++++ I  S++ LL L+ND+LD + ++A  ++L +    L  +L  V+ ++     E
Sbjct: 486 DQKEFLKDIEGSASSLLALINDLLDFSRIEAERVELAHEAFGLRAVLASVEAAMGAPARE 545

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARD---- 715
             + + V     +    + D  RL Q+ + ++ NA+ F+  G  V+    ++A R     
Sbjct: 546 KGLELSVDISPDVPDMLLGDADRLRQVLTNLVGNAIKFTDHGGVVVQAQCVEACRPAEAI 605

Query: 716 ----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                 + +FSV + G  I  +    +F  F        RR  G GLGL+I    + L G
Sbjct: 606 TRGMRQELLFSVSDTGIGILPEDTSRIFEAFTQADGSYTRRFGGTGLGLAITRRLVALMG 665

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S  +  +     +
Sbjct: 666 GELGVDSVPDQGSVFTFSL 684



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 68/209 (32%), Gaps = 21/209 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAI--KIEGRVSGSCAFLRILS-LDGIYSELAE 180
              L+K  +  R + Q F+ +A  +       ++  R     A +R    +  +  ++ E
Sbjct: 206 AAALAKLDQARRGQPQLFEWLARDKTGRLFWTEVNLR----HAVVRGQDRIIAVVRDITE 261

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIVFQKAIGE 239
                + L      F+ L +++  + W        I + + +Y+       +    +   
Sbjct: 262 RKNAERALRESEKKFRQLAETIGEVFWLASPDVKRIFYVSPAYETLWGRPPVSLYASPQS 321

Query: 240 SRKLFKEEIKK-------RMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGE-- 288
                  E +        R+ S       F +     + G+ +    +   V+   G   
Sbjct: 322 WLDSVHPEDRDKVLDHMTRLASGPPARGIFPDFRVVRDDGSVRWVQARYFPVIGDSGGVS 381

Query: 289 --AGIAIDVSKEITVNDQLTHTYEILHNL 315
             AG   D++  +    +L    E L ++
Sbjct: 382 RLAGTLEDITDRVQTRLELERVNERLEDM 410


>gi|256060749|ref|ZP_05450912.1| PAS domain S-box-containing protein [Brucella neotomae 5K33]
 gi|261324738|ref|ZP_05963935.1| multi-sensor signal transduction histidine kinase [Brucella
           neotomae 5K33]
 gi|261300718|gb|EEY04215.1| multi-sensor signal transduction histidine kinase [Brucella
           neotomae 5K33]
          Length = 783

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 242 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 295

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 296 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 353

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 354 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 413

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 414 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 473

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 474 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 532

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 533 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 593 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 652

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 653 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 711

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 712 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 768


>gi|301309710|ref|ZP_07215649.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831284|gb|EFK61915.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 522

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 106/536 (19%), Positives = 208/536 (38%), Gaps = 77/536 (14%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +      +   L V I ++D+   L   NR+   L+ I    +            L    
Sbjct: 9   EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGI--------NLFENP 60

Query: 364 KLPEQLNWKTWKENIF---SVYKSSETHKDTWHLPN----GQTLHVIVTSNPRGG----- 411
             PE    +  +  +      Y+      + ++  +    G  L + +   P  G     
Sbjct: 61  NFPEDKIARLKQGEMVVFDCNYEFDNIQTNEYYNIDPKKEGTNLRLSIKCVPLEGEAEDI 120

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              + MF + T +     K   L       +      +  +                   
Sbjct: 121 CGYVLMFTDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYD-----------------V 163

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           + +++     +R +        +       F  I+   D ER  +QG  ++++  + EYS
Sbjct: 164 KTDKMHIDLDLRVLGNKSRLRASNLTTKKDFCEIVHPEDRERVLVQGFEKIVTGEIGEYS 223

Query: 530 II--PLPNAQTMLTF---------------------VNVTDSVRAERALTEKNE------ 560
           I    L   Q +                        +++TD +  +  L           
Sbjct: 224 IQYRQLFEGQYVWVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWVERERQRKE 283

Query: 561 ----ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                 ++A+ +K+ F+ ++S+E+R+PL  I+GF ++L  +K      ++  YV+ I  +
Sbjct: 284 YELAKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEE-EEREFYVDIIDKN 342

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S +LL L+ DILD + ++AG   +        ++  E     A K+   N+R       +
Sbjct: 343 SELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDQGSQ 401

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             +  +D +R++Q+ S  L+NA+ F+S+G  + L     N +   SV + G  I E+ C+
Sbjct: 402 PVTVFSDPKRVVQVISNFLTNAIKFTSEGE-IKLAYKVSNDEIRVSVSDTGMGISEEDCR 460

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           ++F+RFV       ++G GLGL+I ++ I   GG + + S+    +T    +P KE
Sbjct: 461 TIFDRFVKL--NACKQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 514


>gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1769

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 130/789 (16%), Positives = 282/789 (35%), Gaps = 108/789 (13%)

Query: 107  QTDTDLLSFENWLKFHHYIKLSKATEKLRKE--GQS-----FDLVAETQNDCAIKIEGRV 159
             +   ++++E W    H      A + L+K   G++     F ++    +   IK  G V
Sbjct: 824  SSPESVVAYEVWSHGVHPDDRQAAADLLQKAILGEADYNTEFRVLHPDGSLHYIKASGLV 883

Query: 160  SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
                A  + +S+ G+  ++ +       L    + F+ +FDS    +   + AGDI+ AN
Sbjct: 884  VRDEAG-QPISMIGVNLDITDIRQAEAALQASETRFRRVFDSNVVGMMFTNFAGDIIEAN 942

Query: 220  ISYKKNTETEGIVFQKAIGESRKLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNK 275
              + +            +    ++   E ++     +              +      + 
Sbjct: 943  DRFLEMLGYSRAQRPMGLINWAEITPPEYRELDLQAIEHLRQSGFIHPFEKAYRHQDGHL 1002

Query: 276  SYKIVRVL----NSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIA-----IF 322
             + ++ V            + +++S +     + T   + L      L + +A     ++
Sbjct: 1003 VFVLIGVAMLSQTDGSCVCVVVNISAQKAALQERTKAEQALQESKLRLELGLASANTGLW 1062

Query: 323  DQNRYL--QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
            D        + N+ +  +       +       E    +   +      + +   +    
Sbjct: 1063 DWKMQTGELWFNKQWKSMLGYQEHEIENR--LTEWQSRVHPDDLAQVYQDVERHIQGKTE 1120

Query: 381  VYKSSETHK-----DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-------K 428
            +Y++    +       W L  G+ +            I    +++ +   E        +
Sbjct: 1121 LYRNEHRLRCKDGSYRWILAQGRMVERDAEGRLL-RFIGTHTDISDRKKAEQTIEQQAQR 1179

Query: 429  YNTLVKVQGETIDHLS--------------------EGVAVFGPDGRIKLSNPAFRSLWK 468
               L +        L                      G+  F PD           S+  
Sbjct: 1180 ERLLRETNQRISQSLDLPTIFDTASREICNCLQGSRVGIFKFYPDSGYDDGEFVAESVVN 1239

Query: 469  TEENRLSPGTHIRNIAATCSRYYN---------------ESDGWDLFAAI---------- 503
               + L+   H        +  Y                E+   D+ +            
Sbjct: 1240 DFPSVLAIPVHDHCFGENYASLYAQGRYYVADDIHHDGLENCHVDILSQFQVRANLVIPI 1299

Query: 504  -----------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                       I   D  R   Q  ++L      + +I    +         + +  +A+
Sbjct: 1300 ICQDVLWGLLCIHQCDGPRHWEQSDIDLAQQFSFQLAIAIQQSNLFEQLQQELRERQQAQ 1359

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            + LT++N+ L +A  +K+ F+ ++S+ELR+PL  I+G T+ L     G +N +Q + ++ 
Sbjct: 1360 QQLTQRNQELIRATRLKDEFLANMSHELRTPLNAILGMTEGLHEEVFGPVNDRQLKALQT 1419

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            +  S++ LL L+NDILD+A +++G ++L  S   +  L       I  +  +  I++ V 
Sbjct: 1420 VERSASHLLALINDILDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVN 1479

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARDNGDFIFSVK 724
                L   + D +R+ Q+   +L+NA+ F+ +G ++ L        +A  ++    FSV+
Sbjct: 1480 LPLNLPDIILDERRIRQVLINLLNNAVKFTPEGGSITLEVILPPPREAEGESPYLRFSVR 1539

Query: 725  NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I  +  K +F  F+        Q +G GLGL++ +  + LHGG V ++S     +
Sbjct: 1540 DTGIGISPENIKKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVGVGS 1599

Query: 783  TINCRIPSK 791
              +  +P +
Sbjct: 1600 CFSIDLPYQ 1608



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 96/280 (34%), Gaps = 29/280 (10%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   +  +      ++   + AI +     YL   NR+  +L+       +        
Sbjct: 521 QRTAELQAREARYRGLMEGASDAIFLATPEGYLIEANRAAEDLFGYSRDDFSGLSLERSP 580

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL------PNGQTLHVIVT-SNP 408
           L    S    PE+L+       IFS ++     K  W L       +G  + V ++ S  
Sbjct: 581 LHI--SQLHPPEELD------RIFSSFERIIEEKQLWVLDTRILKADGSEIPVDISGSLI 632

Query: 409 RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           + G       +F ++  +   E K  +         + + + V +  PD R     P   
Sbjct: 633 KVGQTHIVQGIFRDIGDRAAFEEKLRSSETELRSVFEAMGDLVLIIAPDARKVNVMPTRH 692

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSD 523
            + + +   +        +  T    + +         I+ +    +  S +  ++L   
Sbjct: 693 QILEPQATEI--------LDQTLDCLFQDEAESRTRLPILEALTTGKTVSFEYQIDLEDR 744

Query: 524 SV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            +  E SI P+ + + +    ++T   +AE  + + ++ L
Sbjct: 745 RIYFEASISPMSDRRVIWVARDMTKRKQAEAEIFQLSQRL 784



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 65/488 (13%), Positives = 150/488 (30%), Gaps = 62/488 (12%)

Query: 169 LSLDGIYSEL-AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT- 226
           L+L  + SEL +    +  +L    + ++ L +     ++     G ++ AN + +    
Sbjct: 506 LALASLNSELESRVEQRTAELQAREARYRGLMEGASDAIFLATPEGYLIEANRAAEDLFG 565

Query: 227 ----ETEGIVFQKAIGESRKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSY 277
               +  G+  +++     +L   E   R+ SS        +    +T      G+    
Sbjct: 566 YSRDDFSGLSLERSPLHISQLHPPEELDRIFSSFERIIEEKQLWVLDTRILKADGSEIPV 625

Query: 278 KIVRVLNSFGE----AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQ 329
            I   L   G+     GI  D+       ++L         +   +   + I   +    
Sbjct: 626 DISGSLIKVGQTHIVQGIFRDIGDRAAFEEKLRSSETELRSVFEAMGDLVLIIAPDARKV 685

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
               +  ++ E     +     +    +   S  +LP           I     + +T  
Sbjct: 686 NVMPTRHQILEPQATEILDQTLDCLFQDEAESRTRLP-----------ILEALTTGKTVS 734

Query: 390 DTWH--LPNGQTL-HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             +   L + +      ++       IW+  ++T +   E +   L +     +   + G
Sbjct: 735 FEYQIDLEDRRIYFEASISPMSDRRVIWVARDMTKRKQAEAEIFQLSQRLKIALSSGNIG 794

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW---DLFAAI 503
              +         +    +L+  + +               S   +  D     DL    
Sbjct: 795 FWDWDLRQNQITWDEQMYALYGVDNSSYFSSPESVVAYEVWSHGVHPDDRQAAADLLQKA 854

Query: 504 I---TSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           I     ++ E + L   G+L  +  S L            +   +++TD  +AE AL   
Sbjct: 855 ILGEADYNTEFRVLHPDGSLHYIKASGLVVRDEAGQPISMIGVNLDITDIRQAEAALQAS 914

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS-S 617
                     +  F  +V                ++ T+  G +     +++E +  S +
Sbjct: 915 E------TRFRRVFDSNV--------------VGMMFTNFAGDIIEANDRFLEMLGYSRA 954

Query: 618 TILLNLVN 625
              + L+N
Sbjct: 955 QRPMGLIN 962


>gi|56419479|ref|YP_146797.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|261419163|ref|YP_003252845.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC61]
 gi|297530867|ref|YP_003672142.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. C56-T3]
 gi|319765980|ref|YP_004131481.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC52]
 gi|56379321|dbj|BAD75229.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|261375620|gb|ACX78363.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC61]
 gi|297254119|gb|ADI27565.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. C56-T3]
 gi|317110846|gb|ADU93338.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC52]
          Length = 738

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 137/768 (17%), Positives = 287/768 (37%), Gaps = 69/768 (8%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
           R+  + +  V         + ++L+ Y  +   +    ++ +   E  ++     +  ++
Sbjct: 8   REEQNASPDVRSLEEENRRLKERLNSYSIIFERSLDAIVILNKNGEFVDVNEAACKLFEM 67

Query: 106 PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF--DLVAETQNDCAIKIEGRVSGSC 163
            +      SF ++L+      L      L+K G SF  +L+ +  +     +E   S   
Sbjct: 68  DKFSLIGHSFSSFLELVPPDILLFQRSMLQKFG-SFSDELLIKLPDGKVKHVE--FSMKK 124

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
                  L  +    A   L+ +++ +   +F+ +F+     +   D+ G  +  N ++ 
Sbjct: 125 DVFDEFDLVMMRDISAHKALERERIIHEF-LFRDVFNRAVDGIVIFDEFGRFIDVNPAFS 183

Query: 224 KNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
            +   E      + FQ+ +         E  + +           E       G  K ++
Sbjct: 184 MSLNLEKGKLLNLSFQQFVARE---CANEFARLLAEVKEKGTAKGELSLVRPDGTVKMFE 240

Query: 279 IVRVLNSFGEAGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
           +    N +    +AI  DV++   +  +L  + E    I      AI I+D   Y+   N
Sbjct: 241 LTATSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQAHEAILIWDDFGYILNAN 300

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-- 390
            +    +E+ L  L      D  +++     K             IFS ++     +D  
Sbjct: 301 PAASRTFELPLNLLVRRNLFD-FVDYGDEKVK------------RIFSEFRRKGEIRDEL 347

Query: 391 TWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           T+H+PNG+   +  T       G  + +F N++ +  +E +     +      DH  +G+
Sbjct: 348 TFHMPNGEDKQLEFTMKKGAIDGYHLTIFRNVSERRKIERELRESEQKFRSIFDHAMDGI 407

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            ++    RI  +NP    ++  E+  L     +  +     R  N+              
Sbjct: 408 LLWDAKHRIIDANPVVCGIFSVEKEALLGRMVVELVPERARRQLNKLLQQCQRTG----- 462

Query: 508 DDERKSLQGTLELLSD---SVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
                   G +E   +    ++E+S+   +     M+   +VT+    E  L + +    
Sbjct: 463 -----EASGEVEFFDEGKGRIIEFSLKKEVIPGVGMMMLRDVTERKEMELQLRKSDTLNV 517

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
                       +++E+R+P+T + GF  LL+    GS++   S Y   I +    + ++
Sbjct: 518 VG-----ELAAGIAHEIRNPMTALKGFIQLLQ----GSIDGDYSMYFNVIMSELKRIESI 568

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + + L LA   A    + Y    +  ++ +    I+ +   +N++I    +  L     +
Sbjct: 569 ITEFLVLAKPQA----VQYKQNDICKIMQDTIDLISAQAMMHNVQIIADFERGLPPVYCE 624

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             +L Q+F  IL NA++   KG  + ++  R       S+ + G  IP+D  K +   F 
Sbjct: 625 PNQLKQVFINILKNAIEVMPKGGDITVRITRAGCYVRISITDQGCGIPKDKIKKLGEPFY 684

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 + RG GLGL +    I  H G + + S     TT +  +P +
Sbjct: 685 ----TTKERGTGLGLMVSYKIIEEHQGKIEVESEVGVGTTFHITLPIE 728


>gi|39935007|ref|NP_947283.1| sensor histidine kinase pleC [Rhodopseudomonas palustris CGA009]
 gi|39648858|emb|CAE27379.1| sensor histidine kinase, possible pleC [Rhodopseudomonas palustris
           CGA009]
          Length = 779

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/524 (20%), Positives = 210/524 (40%), Gaps = 50/524 (9%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANK 364
           +     L+     +  +D +R   F ++S   +  ++        S ++LL F   +A  
Sbjct: 256 SRIDTALNRGRCGLWDWDLSRGRIFWSQSMFTILGLE--------SRNDLLTFGEVNALV 307

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFE 417
             E ++     + + +       H       +G  + + +               I +  
Sbjct: 308 KGEDIDLFAIADELMAGRVDHIDHSFQMRHAHGHWIWLRMRCELTQEAGATEKHLIGIAV 367

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +         + I+ + E   ++  + R+ L N  F+ L K  ++ ++PG
Sbjct: 368 DITEQKSLAERSVEADLRLRDAIETIPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPG 427

Query: 478 THIRNIAATCS------RYYNESDGWDLFAAIITSFDD-------ERKSLQGTLELL--- 521
           T    I           R  +               DD       ER++  G    +   
Sbjct: 428 TSYETILEVGRMPQLRTRLCDNGAVMPGARTFEAQLDDGSWLHISERRTKDGGYVAVGTD 487

Query: 522 -------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                        +D  L  ++  L   Q+        +     R   ++     +A++ 
Sbjct: 488 ITRIKAHEQKLVDNDLRLRATVADLKITQS-KLEKQALELADLARKYADEKRRAEEANQT 546

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+ELR+PL  IIGF++++ +   G+L + K  +Y   I  S   LL ++NDI
Sbjct: 547 KSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDI 606

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ ++AG M+L    + L   + E  + +A +    ++ ++   + ++   VADR+ +
Sbjct: 607 LDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLELRSELNDQIP-IVADRRAI 665

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +LSNA+ F+     V ++     G  +  + + G  IP    + +   F     
Sbjct: 666 KQILINLLSNAVKFTPDAGRVTVRGHLAGGSIVLMIADTGIGIPPQSLRRLGQPFEQVES 725

Query: 748 --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  G GLGL+I +S +NLHGG + + S+    T +   +P
Sbjct: 726 QLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVSLP 769



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 83/250 (33%), Gaps = 33/250 (13%)

Query: 213 GDILWANISY-------KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
           G I W+   +       + +  T G V     GE   LF    +        ++ +F   
Sbjct: 277 GRIFWSQSMFTILGLESRNDLLTFGEVNALVKGEDIDLFAIADELMAGRVDHIDHSFQMR 336

Query: 266 VSTLEHGNNKSYKI---VRVLNSFGE-----AGIAIDVSKEITVNDQLT----HTYEILH 313
                H +     +     +    G       GIA+D++++ ++ ++         + + 
Sbjct: 337 -----HAHGHWIWLRMRCELTQEAGATEKHLIGIAVDITEQKSLAERSVEADLRLRDAIE 391

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            +  A  ++D    L   N  F  L ++  + +    S + +LE      ++P+      
Sbjct: 392 TIPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETILEV----GRMPQLRTRLC 447

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
               +    ++ E   D     +G  LH+       GG + +  ++T     E K     
Sbjct: 448 DNGAVMPGARTFEAQLD-----DGSWLHISERRTKDGGYVAVGTDITRIKAHEQKLVDND 502

Query: 434 KVQGETIDHL 443
                T+  L
Sbjct: 503 LRLRATVADL 512


>gi|294497989|ref|YP_003561689.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium QM B1551]
 gi|294347926|gb|ADE68255.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium QM B1551]
          Length = 1012

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/639 (16%), Positives = 224/639 (35%), Gaps = 44/639 (6%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             + +        ++ LF+    +V   D  G+I   N    + T       +K      
Sbjct: 243 QEEVRDSQLKEEYYQSLFNYNPNIVCAVDLYGNIQTINPKGIELTGYTLHQMEKIPFPYM 302

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-----NSFGEAGIAIDVS 296
               E+ ++ M  S + +  + E     +       ++ ++         G   IA DV+
Sbjct: 303 FREAEKAEEYMWKSLSGDSVYYEATLIRKDNQPVYVEVTQMPIIVHGQIKGSYVIAKDVT 362

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIF---DQNRYLQFHNRSFVELWEIDLAFLATN 349
                  QL    E     L     AI  F   D+           +     +       
Sbjct: 363 DRKKAQQQLLDLQEDLKRTLSQQDGAIFKFVKNDEGYIHTMCEGKMIREMGYE-EIDVVG 421

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            + +E L         PE  ++    +  +    + E       L +    +  +  +  
Sbjct: 422 KTLEEFL---------PE--SYAKENKRYYEKAWAGEKVSYEVLLNDF-AYYTKLIPHIY 469

Query: 410 GG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            G     I    ++T   +   K      +    +  +SEGV     +G +  +N     
Sbjct: 470 KGEVKEVIGSIVDVTDLHEAREKLAKSESMYRSVLSTMSEGVVFHDLEGNLIAANAYAAK 529

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI-ITSFDDERKSLQGT-LELLSD 523
           +     +++                       D+ +   + + +  R ++ G  L     
Sbjct: 530 ILNVPYDQILSVNPFGLDWEIIHPDGTPFALEDIPSVRCLRTKEPVRNTVMGIYLNEKKL 589

Query: 524 SVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKN-------EALRKADEIKNSF 572
           + L  +  PL  +      ++TF ++T     E+ L   N       E   KA++ K+ F
Sbjct: 590 TWLSVNAEPLQESKYYKGVVVTFYDITKQQEQEQDLLHSNQQMIIAKEEAEKANQAKSEF 649

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  VS+ELR+PL +I+G+  +L+      L  KQ   +  I  +   LL L+N+ LDL+ 
Sbjct: 650 LSKVSHELRTPLNSILGYAQILEEQGEKDLTEKQLNRIRKILKAGNHLLYLINETLDLSK 709

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIF 691
           +++G + +N   + + + + +  + +     + +  +       +      D  R  QI 
Sbjct: 710 IESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHAYQEVFVEVDELRFQQIL 769

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             +L+NA+ +S     + +            +++ G  IP      +F  F    +R ++
Sbjct: 770 LNLLTNAIKYSPAYRDITIYTEITQHHVTILIEDRGFGIPASELNRIFEPFYRI-NRLEK 828

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G G+GL++V+  + L  G   + S +   +T   R P 
Sbjct: 829 DGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFPL 867


>gi|320353526|ref|YP_004194865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122028|gb|ADW17574.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 930

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 201/511 (39%), Gaps = 31/511 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +             I+      + + D+   +   N +F     I    +      + L
Sbjct: 173 ERRRAAESAEQAWVRIIDTSENLLFVIDRTFRILRVNLAFARRLGISKEEVVGRRCYELL 232

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
               R    LP         ++     ++     +           ++  S     T+++
Sbjct: 233 C---RHREPLPSCPLHAIILDHQPRTVETILPPWNFDCRM--MAAPLLDASGQHEATVFI 287

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            ++++     E +     +     + +    +    P G +   +P +  L   E + + 
Sbjct: 288 IQDISEHKRSERELRAAREQYQSLVQNSHGIIYTISPHGVVTYVSPGYTKLLGHEPDHIV 347

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPL 533
            G H R I      + ++    + F   +    + R+ L+  +     S+  +  + IPL
Sbjct: 348 -GKHFREIV-----HPDDVALCEDFYREVWEHGEIRRGLEYRIPHRDGSIRWHLSNFIPL 401

Query: 534 PNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            N +      +   +++T+  + +  L    EA   A   K+ F+  +S+E+R+PL  I+
Sbjct: 402 TNEEGEIESFVGNAMDITEQKQHQAELQAAREAAEAASRAKSDFLALISHEIRTPLNAIV 461

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+ L + +  G    +  +YV+ +  SS +L++LVND+LD++ V+AG ++L      L 
Sbjct: 462 GFSALARRTADGV---QLREYVDILDQSSRLLMDLVNDVLDMSKVEAGQLQLESIPFNLP 518

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
           + ++ ++   A       +  +VI +  L  ++  D  R  QI S +LSNAM F+  G  
Sbjct: 519 EAVDLLQWQFAPVAARKQLDFQVIREETLPPWIQGDPIRFRQIASNLLSNAMKFTESGCV 578

Query: 708 VILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           ++   A+D              V++ G  I      S+F  F         +  G GLGL
Sbjct: 579 LLRVTAQDQAPGVEGRCLVRLEVRDTGIGIEARQIASLFQPFQQLDPGISRKYGGTGLGL 638

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +IV   + L  G V ++S+    ++    +P
Sbjct: 639 AIVHRLVELMQGRVEVASTPGTGSSFTVELP 669



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 78/261 (29%), Gaps = 27/261 (10%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGIVFQKA 236
             + +   +    +  + D+ + L++  D+   IL  N+++ +       E  G    + 
Sbjct: 172 EERRRAAESAEQAWVRIIDTSENLLFVIDRTFRILRVNLAFARRLGISKEEVVGRRCYEL 231

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DV 295
           +   R+         +I                      +  ++            I D+
Sbjct: 232 LCRHREPLPSCPLHAIILDHQPRTVETILPPWNFDCRMMAAPLLDASGQHEATVFIIQDI 291

Query: 296 SKEITVNDQLTHTYEILHNL---TVAIA-IFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           S+      +L    E   +L   +  I      +  + + +  + +L   +   +     
Sbjct: 292 SEHKRSERELRAAREQYQSLVQNSHGIIYTISPHGVVTYVSPGYTKLLGHEPDHIVGKH- 350

Query: 352 NDELLEFLRSANK-LPEQLNWKTWKE-NIFSVYKSSETHKDT---WHLPNGQTLHVIVTS 406
                E +   +  L E    + W+   I    +    H+D    WHL N   L     +
Sbjct: 351 ---FREIVHPDDVALCEDFYREVWEHGEIRRGLEYRIPHRDGSIRWHLSNFIPL-----T 402

Query: 407 NPRGGT---IWMFENLTVQVD 424
           N  G     +    ++T Q  
Sbjct: 403 NEEGEIESFVGNAMDITEQKQ 423


>gi|56963601|ref|YP_175332.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909844|dbj|BAD64371.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 598

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 173/393 (44%), Gaps = 25/393 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  +++   ++ N   +     +  +++GV      GRI L+NP
Sbjct: 223 ILTQDEIGQLAIAFNRMRRELNRNISELNQEKEQLSHILASMADGVITLDRQGRILLTNP 282

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               +                   T  R         LF  ++++  +E + L      +
Sbjct: 283 QAEEVLALLFYEEGQKP------ITGERKTLPVSLTPLFEQVVSAEKEELQELS-----V 331

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               +   + PL   + +   V V   V  ER          + D+++  F+ +VS+ELR
Sbjct: 332 QGRSMAVLMAPLYAEEHVRGAVAVVRDVTEER----------RHDKLRKDFIANVSHELR 381

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +      S + ++ +  + I   S  +  LVN++LDLA ++AG + LN
Sbjct: 382 TPISMLQGYSEAMVDGVTSS-DEERKEVAQIIYDESLRMGRLVNELLDLARMEAGYIDLN 440

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L+  L  + +  A+   E ++ +++   G+    V D  R+ Q+ + ++ NA+  
Sbjct: 441 LEEVDLDSYLERITRKFASFAREYDVTVELAKPGRGQIAVFDPDRIEQVLTNLIHNAIRH 500

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
           ++ G  + +   ++     F+V + G  IPE+    VF RF         Q  G GLGL+
Sbjct: 501 TNPGGLITVVHEQEEERDTFAVVDTGRGIPEEDLPYVFERFYKADKARTRQHGGTGLGLA 560

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +  I+ H G +++ S     TT +  +P ++
Sbjct: 561 IAKHIIDAHQGKITVHSRLGEGTTFHFTLPKQQ 593



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 75/247 (30%), Gaps = 40/247 (16%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            ++S+     +QL+H   IL ++   +   D+   +   N    E+  +        P  
Sbjct: 245 RNISELNQEKEQLSH---ILASMADGVITLDRQGRILLTNPQAEEVLALLFYEEGQKP-- 299

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-- 410
                         E+         +F    S+E  +       G+++ V++        
Sbjct: 300 -----------ITGERKTLPVSLTPLFEQVVSAEKEELQELSVQGRSMAVLMAPLYAEEH 348

Query: 411 --GTIWMFENLTVQVD-----------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
             G + +  ++T +             +  +  T + +     + + +GV     + +  
Sbjct: 349 VRGAVAVVRDVTEERRHDKLRKDFIANVSHELRTPISMLQGYSEAMVDGVTSSDEERK-- 406

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDDERKS 513
                 + ++            + ++A   + Y +    E D       I   F    + 
Sbjct: 407 ---EVAQIIYDESLRMGRLVNELLDLARMEAGYIDLNLEEVDLDSYLERITRKFASFARE 463

Query: 514 LQGTLEL 520
              T+EL
Sbjct: 464 YDVTVEL 470


>gi|160882322|ref|ZP_02063325.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
 gi|156112236|gb|EDO13981.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
          Length = 810

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 118/608 (19%), Positives = 239/608 (39%), Gaps = 53/608 (8%)

Query: 216 LWANISYKKNTE----TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            W N    +       T   + ++A    + L  ++IK  M+     ++     +     
Sbjct: 217 TWWNHQIAERRAIILNTLDDMPEEAAEYRQTLEMQDIKSLMVVPLISKEEVWGYMGIDMV 276

Query: 272 GNNKSYKIVRV-----LNSFGEAGIAIDVSKEITVNDQL------THTYEILHNLTVAIA 320
              +S+  V       L +     I +  S+     D+L           I  NL   + 
Sbjct: 277 RTQRSWSNVDYQCFSSLANIISICIELRKSELQAKEDRLALDNSEKILRNIYKNLPAGVE 336

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIF 379
           ++D++ YL   N   +E++ +          N+ L   L     +P E       KE++ 
Sbjct: 337 LYDKDGYLVDINDKELEIFGLSD-------KNEALGVNLFDNPNIPLEVKERLRAKEDVN 389

Query: 380 SVYKSSETHKDTW--HLPNG------QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
                  +  + +     NG      +   +  + N     +++  + T   +  TK   
Sbjct: 390 FSINYDFSKINQYVDSRRNGIINLTTKVTALYDSQNRFINYLFINIDTTETTNAYTKIQE 449

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
              +     D+   G A F       L+   +             GT +  +    +   
Sbjct: 450 FENLFLLIGDYAKVGFAHFN-----VLTRDGYAQDTWYRNLGEKEGTPMPQVIGVYAHVV 504

Query: 492 NESDGW------DLFAAIITSFDDE----RKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            E          ++     TS   E    R++ + T   ++  V +Y        + +  
Sbjct: 505 PEDQAVLKNFVGEVKTGKATSLRKEVRVCRENGKYTWTSINVMVRDYRPQD-GIIEMLCI 563

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T     E+ L    +   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +    
Sbjct: 564 NYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAET---D 620

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             S++ +Y++ +  ++ +LL L++DILDL+ ++AG     Y+ + +N+   E+ +S++ K
Sbjct: 621 SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCTEIIKSMSMK 680

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +    + +             D+ R  Q+ S  ++NA+ F+ +GS  +      +    F
Sbjct: 681 V-SKGVELIFEEPLLECYLYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKF 739

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G  IPE+  KS+F RFV      Q  G GLGLSI +S ++  GG + + S++   
Sbjct: 740 YVRDTGMGIPEEKQKSIFERFVKLNTFVQ--GTGLGLSICKSIVSQMGGEIGVDSTEGIG 797

Query: 782 TTINCRIP 789
           +      P
Sbjct: 798 SCFWFTHP 805


>gi|254693380|ref|ZP_05155208.1| PAS domain S-box-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|261213630|ref|ZP_05927911.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915237|gb|EEX82098.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 3 str. Tulya]
          Length = 783

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 242 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 295

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 296 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 353

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 354 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 413

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 414 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 473

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 474 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 532

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 533 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 593 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 652

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 653 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 711

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 712 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 768


>gi|289582943|ref|YP_003481409.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289532496|gb|ADD06847.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 838

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/511 (20%), Positives = 212/511 (41%), Gaps = 42/511 (8%)

Query: 292 AIDVSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           AID +      D+ T   + +L    V I + D +    F NR   E+    L+ L T  
Sbjct: 340 AIDRTTAQRRRDEATSWADSVLDAAPVGITLVDTDGQTVFANRRAEEITGRPLSKLQTFT 399

Query: 351 SNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            NDE    +       + +++       +    +       +   P+G+ + + +  +P 
Sbjct: 400 HNDERWGLVDEDG---DPISFTDLPFTRVIETEEPVRNEVVSIRRPSGERVWLSIHCSPL 456

Query: 410 -------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                   G I+ F ++T + +LE++         E +  + E +  F  D R   +N  
Sbjct: 457 YDSIGDLDGVIYAFRDVTERRELESRLE-------EILGRVDEAICAFDEDFRYTHANDR 509

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELL 521
              L +     L        +       + ES   D+   +   + D +  +        
Sbjct: 510 AEELLQRSREEL--------LGEQLWEAFPESANEDVVRNSFQEAMDSQEPTSYEHYYEP 561

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +++ LE +I P     ++  F +VTD    +R L E NE L         F    S++L+
Sbjct: 562 ANAWLEVTIYPSETGSSVY-FRDVTDRREYQRRLEESNERL-------EQFAYAASHDLQ 613

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            PL  +  + DLL+T     L+    ++++Y    +  +  ++N +L+ + ++       
Sbjct: 614 EPLRMVSSYLDLLETRYADELDEDAQEFIDYAVDGAERMRQMINGLLEFSRIETQGEP-- 671

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +  + L+++L +V + +  K+ EN+  I   S  +L     D  +L Q+F  +LSNA+ +
Sbjct: 672 FEPVDLDEVLEDVMRDLRVKIVENSADI---SAAELPRVAGDGNQLRQVFQNLLSNAIVY 728

Query: 702 S-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           S  +   + ++A     +++ SV +NG  I  D  + +F  F      G+  G G+GL++
Sbjct: 729 SGEEPPEIDIQAHDTGSEWVISVSDNGVGIDPDDTEQIFGLFERRHSGGEHTGSGIGLAL 788

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            E  I  HGG + + S      T +  +P++
Sbjct: 789 CERIIERHGGEIWVDSEPGEGATFSFTLPTR 819



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 95/289 (32%), Gaps = 33/289 (11%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           + ++  I +   + T   ++     S    + D+    +   D  G  ++AN   ++ T 
Sbjct: 330 LRTVANILASAIDRTTAQRRRDEATSWADSVLDAAPVGITLVDTDGQTVFANRRAEEITG 389

Query: 228 ---------TEGIVFQKAIGESRKL--FKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
                    T        + E      F +    R+I +    +N   ++     G    
Sbjct: 390 RPLSKLQTFTHNDERWGLVDEDGDPISFTDLPFTRVIETEEPVRNEVVSIRRP-SGERVW 448

Query: 277 YKIV-----RVLNSFGEAGIA-IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
             I        +        A  DV++   +  +L    EIL  +  AI  FD++     
Sbjct: 449 LSIHCSPLYDSIGDLDGVIYAFRDVTERRELESRL---EEILGRVDEAICAFDEDFRYTH 505

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK- 389
            N    EL +     L      ++L E        PE  N    + +      S E    
Sbjct: 506 ANDRAEELLQRSREELLG----EQLWEAF------PESANEDVVRNSFQEAMDSQEPTSY 555

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           + ++ P    L V +  +  G +++ F ++T + + + +     +   +
Sbjct: 556 EHYYEPANAWLEVTIYPSETGSSVY-FRDVTDRREYQRRLEESNERLEQ 603


>gi|254713753|ref|ZP_05175564.1| PAS domain S-box-containing protein [Brucella ceti M644/93/1]
 gi|254717189|ref|ZP_05179000.1| PAS domain S-box-containing protein [Brucella ceti M13/05/1]
 gi|261219005|ref|ZP_05933286.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M13/05/1]
 gi|261321495|ref|ZP_05960692.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M644/93/1]
 gi|260924094|gb|EEX90662.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M13/05/1]
 gi|261294185|gb|EEX97681.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M644/93/1]
          Length = 783

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 242 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 295

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 296 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 353

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 354 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 413

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 414 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 473

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 474 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 532

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 533 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 593 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 652

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 653 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 711

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 712 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 768


>gi|163742074|ref|ZP_02149463.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161384795|gb|EDQ09175.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 764

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 186/449 (41%), Gaps = 24/449 (5%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSNPRGGTIWMFENLT 420
           A++L E+   +   E +  + ++  +  +      G+  L +          +    +  
Sbjct: 4   ADRLTEERRARLAAERLLELKQAELSAAN---RKLGRHALALTRQIGATQAEVATVRDEN 60

Query: 421 VQVD-----LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +V         K     +    +I    +G A F  D ++  +N A+  L+   E    
Sbjct: 61  AKVKSDLSTANEKVERAERRLWHSIQAFQDGFAFFDADSKLIGANTAYLDLFDGLEEVTP 120

Query: 476 PGTHIRNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             +++R +                D + A ++            + +  D  L       
Sbjct: 121 GVSYVRILQILTDEGLVNTGEQDPDHWRAQMSERWLSPSPEPVVVRMWDDRYLRLLDQRG 180

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +   +++T +V+ E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +L
Sbjct: 181 HGGDMVSLALDITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAEL 240

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +   +L+ +Q  Y   I  S   LL ++ND+LD + ++A  ++L+     L   ++E
Sbjct: 241 LSDT---NLSDEQQLYANTIKNSGEALLVIINDVLDYSKIEAQKLELHPEPFDLERSVHE 297

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VI 709
           V   +     +  + + +  D  L + FV D  R+ Q+ + ++ NA+ F+S+G     + 
Sbjct: 298 VLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTSEGHVALQIT 357

Query: 710 LKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
             +  D+       ++++ G  IPE+  + +F  F  V +    Q  G GLGL+I +  I
Sbjct: 358 GISNADDKICSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAISKRLI 417

Query: 766 NLHGGHVSISSSDEGVTTINCR--IPSKE 792
            L GG + + S +   +    R  +P  E
Sbjct: 418 ELMGGEIWVESQEGKGSCFGFRMELPLAE 446



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 64/201 (31%), Gaps = 12/201 (5%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR-VLNSFGEAGIAID----- 294
                EE + R+ +   LE    E  +        +  + R +  +  E     D     
Sbjct: 4   ADRLTEERRARLAAERLLELKQAELSAANRKLGRHALALTRQIGATQAEVATVRDENAKV 63

Query: 295 ----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
                +    V       +  +       A FD +  L   N ++++L++  L  +    
Sbjct: 64  KSDLSTANEKVERAERRLWHSIQAFQDGFAFFDADSKLIGANTAYLDLFD-GLEEVTPGV 122

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           S   +L+ L     +   + +   W+  +   + S         + + + L ++      
Sbjct: 123 SYVRILQILTDEGLVNTGEQDPDHWRAQMSERWLSPSPEPVVVRMWDDRYLRLLDQRGHG 182

Query: 410 GGTIWMFENLTVQVDLETKYN 430
           G  + +  ++T  V  E +  
Sbjct: 183 GDMVSLALDITSTVQYEEELQ 203



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 55/176 (31%), Gaps = 22/176 (12%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--- 209
           +    R  G  A      +    +E+A    +  K+ + +S      +  +  +WH    
Sbjct: 28  LSAANRKLGRHALALTRQIGATQAEVATVRDENAKVKSDLSTANEKVERAERRLWHSIQA 87

Query: 210 --------DQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
                   D    ++ AN +Y    +  E +    +     ++  +E             
Sbjct: 88  FQDGFAFFDADSKLIGANTAYLDLFDGLEEVTPGVSYVRILQILTDEGLVNTGEQDPDHW 147

Query: 261 NFCETVST---------LEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLT 306
               +            +   +++  +++      G+   +A+D++  +   ++L 
Sbjct: 148 RAQMSERWLSPSPEPVVVRMWDDRYLRLLDQRGHGGDMVSLALDITSTVQYEEELQ 203


>gi|17987608|ref|NP_540242.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|23501503|ref|NP_697630.1| sensory box histidine kinase [Brucella suis 1330]
 gi|62289578|ref|YP_221371.1| histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|148559697|ref|YP_001258609.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|161618591|ref|YP_001592478.1| multi-sensor signal transduction histidine kinase [Brucella canis
           ATCC 23365]
 gi|225852141|ref|YP_002732374.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|254688899|ref|ZP_05152153.1| PAS domain S-box-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|254697031|ref|ZP_05158859.1| PAS domain S-box-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701410|ref|ZP_05163238.1| PAS domain S-box-containing protein [Brucella suis bv. 5 str. 513]
 gi|254703955|ref|ZP_05165783.1| PAS domain S-box-containing protein [Brucella suis bv. 3 str. 686]
 gi|254707666|ref|ZP_05169494.1| PAS domain S-box-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|254709750|ref|ZP_05171561.1| PAS domain S-box-containing protein [Brucella pinnipedialis B2/94]
 gi|254729930|ref|ZP_05188508.1| PAS domain S-box-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|256031240|ref|ZP_05444854.1| PAS domain S-box-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|256044318|ref|ZP_05447222.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113155|ref|ZP_05454032.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256254648|ref|ZP_05460184.1| PAS domain S-box-containing protein [Brucella ceti B1/94]
 gi|256257147|ref|ZP_05462683.1| PAS domain S-box-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|256264347|ref|ZP_05466879.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369055|ref|YP_003106563.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260168376|ref|ZP_05755187.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|260563672|ref|ZP_05834158.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260566796|ref|ZP_05837266.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|260754384|ref|ZP_05866732.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 6 str. 870]
 gi|260757603|ref|ZP_05869951.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 4 str. 292]
 gi|260761429|ref|ZP_05873772.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883409|ref|ZP_05895023.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 9 str. C68]
 gi|261221823|ref|ZP_05936104.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           B1/94]
 gi|261315163|ref|ZP_05954360.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M163/99/10]
 gi|261317281|ref|ZP_05956478.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis B2/94]
 gi|261751949|ref|ZP_05995658.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 5 str. 513]
 gi|261754607|ref|ZP_05998316.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 3 str. 686]
 gi|261757836|ref|ZP_06001545.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|265988319|ref|ZP_06100876.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M292/94/1]
 gi|265990730|ref|ZP_06103287.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994568|ref|ZP_06107125.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297247993|ref|ZP_06931711.1| two-component system, PleD family, sensor histidine kinase PleC
           [Brucella abortus bv. 5 str. B3196]
 gi|17983316|gb|AAL52506.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|23347410|gb|AAN29545.1| sensory box histidine kinase [Brucella suis 1330]
 gi|62195710|gb|AAX74010.1| histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|148370954|gb|ABQ60933.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|161335402|gb|ABX61707.1| multi-sensor signal transduction histidine kinase [Brucella canis
           ATCC 23365]
 gi|225640506|gb|ACO00420.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|255999215|gb|ACU47614.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260153688|gb|EEW88780.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260156314|gb|EEW91394.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|260667921|gb|EEX54861.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 4 str. 292]
 gi|260671861|gb|EEX58682.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674492|gb|EEX61313.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 6 str. 870]
 gi|260872937|gb|EEX80006.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 9 str. C68]
 gi|260920407|gb|EEX87060.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           B1/94]
 gi|261296504|gb|EEY00001.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis B2/94]
 gi|261304189|gb|EEY07686.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M163/99/10]
 gi|261737820|gb|EEY25816.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261741702|gb|EEY29628.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 5 str. 513]
 gi|261744360|gb|EEY32286.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 3 str. 686]
 gi|262765681|gb|EEZ11470.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001514|gb|EEZ14089.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094621|gb|EEZ18419.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|264660516|gb|EEZ30777.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M292/94/1]
 gi|297175162|gb|EFH34509.1| two-component system, PleD family, sensor histidine kinase PleC
           [Brucella abortus bv. 5 str. B3196]
 gi|326408641|gb|ADZ65706.1| PAS domain S-box-containing protein [Brucella melitensis M28]
 gi|326538363|gb|ADZ86578.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 783

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 242 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 295

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 296 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 353

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 354 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 413

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 414 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 473

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 474 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 532

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 533 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 593 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 652

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 653 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 711

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 712 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 768


>gi|300864607|ref|ZP_07109465.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337356|emb|CBN54613.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 708

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 135/678 (19%), Positives = 258/678 (38%), Gaps = 64/678 (9%)

Query: 168 ILSLDGIYSELAETTLK---CKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYK 223
           +L     +S+  E  L+      L      F+ +  +    V   R   G IL+AN  + 
Sbjct: 35  LLETTTEHSDRVEAQLQGFAESVLRESEERFRAIAQATPVPVLIARVADGKILYANAQFS 94

Query: 224 KNTETEGIVFQKAIGESRKLF--KEEIKKRMISSSALEKNF--CETVSTLEHGNNKSYKI 279
                 GI  +  I      F      +++++ + + +      E  +    G      +
Sbjct: 95  ALL---GISLEDLIDRYTPDFYWDRSDREKVLDALSRDGYVQNWEMQAKKVDGTPFWVMV 151

Query: 280 VRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH--NR 333
                +F     A+    D++K       L ++   L   ++A+    + R L     N 
Sbjct: 152 SVQPLTFSGQPAALFALYDLTKRKAGEQVLLNSERRLRRQSLALLELGRERTLNSGDLNA 211

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +  E+ E     L  +  +  L    R   +  E     +  +    V   S+T  +T  
Sbjct: 212 AIREITETAAHTLEVDKVSLWLYNDFRFTVRSAE-----SQIDLGLGVSADSQTEANTAL 266

Query: 394 LP---NGQTLHVIVT-SNPRGGTIWMFENLTVQV--DLETKYNTLVKVQGET-IDHLSEG 446
           L    + Q   V     N +   + ++E  + +    LE   + L     +T +++  E 
Sbjct: 267 LAKNLDEQPYFVKSKKPNLKLVCLDLYERSSDRHWNRLEISTSDLRAGFLDTSLENAEEH 326

Query: 447 VA----------------------VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                                   +F P    + +N +  ++      ++       +I 
Sbjct: 327 FGLPLPETLLAQNSLKELYSKEAEIFSPRPTDESANSSTLNVPIRLGGQIVGIVSHEHIG 386

Query: 485 ATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLS---DSVLEYSIIPLPNAQTM 539
                   E    D  A ++    +  ER+  Q  L       +  +E   + L +A  +
Sbjct: 387 PPRQWALEERTFADSLANLVALAIEGFERQRAQQALSKAKQELELTVENRTVQLKSANKL 446

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                + +  RAE AL E       A   K++F+ ++S+ELR+PL  IIG++++L+    
Sbjct: 447 -LRFEIAERKRAEVALQEALHKAEAASRAKSTFLANMSHELRTPLNAIIGYSEMLEELAS 505

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                     ++ I ++   LL L+NDILDL+ ++AG M+L   +  L DL+ +V  ++ 
Sbjct: 506 DEGLEDLLPDIQKIRSAGKHLLTLINDILDLSKIEAGKMELYLESFDLADLVGDVIATLH 565

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---- 715
              H+N+ +++V     LG    D  ++ QI   +LSNA+ F+ +  TV L A R+    
Sbjct: 566 PLAHKNSNKLEVSCCSDLGVVFTDLTKVRQILFNLLSNALKFT-ENGTVRLSATREMGSN 624

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           +      V + G  +  +  + +F  F        R   G GLGL+I   F  + GG ++
Sbjct: 625 SDWVYLCVADTGIGMSVEQQQCLFEVFNQGDASTTRKYGGTGLGLAISRRFCQMMGGDIT 684

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S     +T    + +K
Sbjct: 685 VESELGVGSTFTVHLKAK 702


>gi|154687042|ref|YP_001422203.1| PhoR [Bacillus amyloliquefaciens FZB42]
 gi|154352893|gb|ABS74972.1| PhoR [Bacillus amyloliquefaciens FZB42]
          Length = 579

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 147/371 (39%), Gaps = 27/371 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++    +         I+++  G+ +    G I L N ++   + T+  RL        
Sbjct: 225 MEMTRTQDMQRDRLLTVIENIGSGLILIDGRGFINLVNRSYTKQFHTKPERL-------- 276

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSVLEYSIIPLPNAQTM 539
                 R Y+++   +    ++             L L   +     E   +P+      
Sbjct: 277 ----LRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVDGVPI------ 326

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +   D  +    +      ++K ++++  FV +VS+EL++P+T+I GFT+ L    +
Sbjct: 327 ---MGPDDEWKGIVLVFHDMTEIKKLEQMRKDFVANVSHELKTPITSIKGFTETLLDGAM 383

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               +  S ++  I   S  L +LV D+LDL+ ++     +   +     +L+E++  + 
Sbjct: 384 KDEKA-LSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLR 442

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            K  E  I  ++    +      D  RL Q+F  + +NA+ ++ +  TV +         
Sbjct: 443 HKAEEKGISFQLDLPEEPIFVTGDAHRLKQVFLNLANNALTYTPEKGTVGISVHVKETVV 502

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I ++    +F RF            G GLGL+IV+  I  H G + ++S 
Sbjct: 503 DIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVTSE 562

Query: 778 DEGVTTINCRI 788
               T     +
Sbjct: 563 PGQGTVFTVTL 573



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
            +S ++ R +NS     +A+D+ +     D Q      ++ N+   + + D   ++   N
Sbjct: 208 RRSDRLGRAMNS-----LAVDLMEMTRTQDMQRDRLLTVIENIGSGLILIDGRGFINLVN 262

Query: 333 RSFVELWEIDLAFLATNPSNDEL----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           RS+ + +      L     +D      +  L     + E    +  +  I    +  E  
Sbjct: 263 RSYTKQFHTKPERLLRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVD 322

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
                 P+ +            G + +F ++T    LE 
Sbjct: 323 GVPIMGPDDEWK----------GIVLVFHDMTEIKKLEQ 351


>gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 2035

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/495 (18%), Positives = 186/495 (37%), Gaps = 49/495 (9%)

Query: 323  DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL-----NWKTWKEN 377
            D    + + + +F ++       L     N  +     +  K+ E++     +   WK  
Sbjct: 1059 DLKGVITYVSDAFCQISGYKREELMGK--NHRISRHPDNDAKIYEEMWAVITHGGAWKGR 1116

Query: 378  IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV-------------- 423
            I      ++T +  ++  +      +  S    G   +  ++T  V              
Sbjct: 1117 I-----KNKTKEGGYYWVDSVIEQELDASGKVVGYAAIRHDVTAHVELEELSEKLESIVE 1171

Query: 424  DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
                    L K Q    D  S G+ +   +  I   N     +          G  +   
Sbjct: 1172 KRTQDLAFLNKEQQAIFDSTSVGIVLL-KERLIVQCNKRIDEMLGY-----KIGEQLNQS 1225

Query: 484  AATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQTM 539
                 R   +  S    ++   +  F+       GTL    LS   ++Y          +
Sbjct: 1226 TDIWYREIPDYQSVYEQVWHGEVVRFEHRLMRKDGTLFWARLSGRAIDYLD---KEKGVV 1282

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            +   +++    A  A+        +A ++K++F+ ++S+E+R+P+  IIG   L   ++ 
Sbjct: 1283 VVVEDISTEKEALEAIQRAKSLAEEATQVKSAFLANMSHEIRTPMNAIIGMAHLALQTE- 1341

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              L+++Q  Y+  I ++S  LL ++NDILD + ++AG M+       L D++  +     
Sbjct: 1342 --LSNQQRNYLVKIDSASKHLLGIINDILDFSKIEAGKMRFESIDFYLEDVMEHLADLSV 1399

Query: 660  TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD 715
             K  E  + +    +  + +    D  RL QI   +++NA+ F+++G     V L A   
Sbjct: 1400 MKAQEKGLELLFDIETNIPTALRGDPLRLGQILINLVNNAIKFTAQGEIRLFVKLLAQEA 1459

Query: 716  NG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                 +F V + G  I E     +F  F        R   G GLGL+I +  + +  G +
Sbjct: 1460 KQVHLLFEVHDTGIGIDEAQQAKLFEAFSQADLSTTREFGGSGLGLAICKHLVEMMQGKI 1519

Query: 773  SISSSDEGVTTINCR 787
             + S+    +T +  
Sbjct: 1520 WVKSTLGEGSTFSFS 1534


>gi|260778490|ref|ZP_05887382.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604654|gb|EEX30949.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 812

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 159/391 (40%), Gaps = 32/391 (8%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + L  Q +               + H+ + V     D ++   N AF  L     + +  
Sbjct: 284 QQLYEQSESLKIREAESARLARVVKHMRDAVVFTDLDSKVTWVNGAFERLTGYSLSEM-- 341

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------VLEYSI 530
                 I           D        I    D R+   G  ELL+ +       +E ++
Sbjct: 342 ------IGKKPGDVLQGVDTDKRTTRKIRELIDRREP--GFFELLNYNKEGESYWIEIAL 393

Query: 531 IPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            PL +        M    ++T  V  E +L  K      A+  K+ F+  +S+ELR+P+ 
Sbjct: 394 TPLYSTHGQIEGFMAVERDITQRVELEESLKIKAVEAEAANIAKSQFLAAMSHELRTPMN 453

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G  DLLK +   +LN +Q +YV+    S   +LN++NDILD + ++AG ++L     
Sbjct: 454 GILGVGDLLKNT---TLNEEQQEYVDTFLGSGKHMLNVLNDILDFSKIEAGKLELEKVEF 510

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
           +L D++  + +       + ++  K         + VAD  R+LQI   +LSNA+ F+S+
Sbjct: 511 LLKDVVARLTRLYEPLCADKHLEFKCEYSQSCDRALVADETRILQILQNLLSNALKFTSE 570

Query: 705 GSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           G  + L           +    V + G  I  +   ++F+ F        RR  G GLGL
Sbjct: 571 GG-ITLSLDVVEQSHRIELHIDVSDTGIGISPEKQSAIFDPFSQAESDTTRRFGGTGLGL 629

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI    +    G V +SS     +     +P
Sbjct: 630 SITRDLVKAMNGTVDLSSEVGKGSQFTIVVP 660



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 294 DVSKEITVNDQLT-HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           + S+ + + +  +     ++ ++  A+   D +  + + N +F  L    L+ +      
Sbjct: 288 EQSESLKIREAESARLARVVKHMRDAVVFTDLDSKVTWVNGAFERLTGYSLSEMIGKKPG 347

Query: 353 DELLE---FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           D L       R+  K+ E ++            +     +   +   G++  + +   P 
Sbjct: 348 DVLQGVDTDKRTTRKIRELIDR-----------REPGFFELLNYNKEGESYWIEIALTPL 396

Query: 410 -------GGTIWMFENLTVQVDLETKYN 430
                   G + +  ++T +V+LE    
Sbjct: 397 YSTHGQIEGFMAVERDITQRVELEESLK 424



 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 16/152 (10%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
              L     +L E +   K      +    +   +   V   D    + W N ++++ T 
Sbjct: 276 FRKLAESEQQLYEQSESLKIREAESARLARVVKHMRDAVVFTDLDSKVTWVNGAFERLT- 334

Query: 228 TEGIVFQKAIG-------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
             G    + IG       +     K   +K        E  F E ++  + G +   +I 
Sbjct: 335 --GYSLSEMIGKKPGDVLQGVDTDKRTTRKIRELIDRREPGFFELLNYNKEGESYWIEIA 392

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQLT 306
                       G   +  D+++ + + + L 
Sbjct: 393 LTPLYSTHGQIEGFMAVERDITQRVELEESLK 424


>gi|312891850|ref|ZP_07751356.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
 gi|311295684|gb|EFQ72847.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
          Length = 1449

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 111/646 (17%), Positives = 238/646 (36%), Gaps = 50/646 (7%)

Query: 184  KCKKLSNHISVFKVLFDSLDFLV----WHRD-QAGDILWANISYKKNTETEGIVFQKAIG 238
            +  +L + +   K   +  + +     W  D +  +I W   +  K        +Q  + 
Sbjct: 401  ERHRLEDDLRRTKEALEQTNSVARVGGWELDIEKQNISW--TAITKEIHGVSADYQPRLD 458

Query: 239  ESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI- 293
             + + +KE   +  I+     +       +    + +   +   +  + N+  E G+   
Sbjct: 459  NAIRFYKEGKSRERITEVINLAISNGTPWDLELQIVNTQGREIWVRAIGNAEFENGMCKR 518

Query: 294  ------DVSKEITVNDQLTHTYEILHNL-----TVAIAIFDQNRYLQFHNRSFVELWEID 342
                  D+ +       +  + ++  +L      V+I   D N  +   N+   +L    
Sbjct: 519  IYGTFQDIDETKKTAIAVNTSRKLFKDLLYAASEVSIIATDVNGLITVFNKGAEKLTGYA 578

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY------KSSETHKDTWHLPN 396
               +    +   +        +  E           F V+        SE H+ T+   +
Sbjct: 579  ADEMVGKQTPAIIHSPAEVNKRGEELTAHYGVSVEGFGVFVKVAQITGSEHHEWTYIKKD 638

Query: 397  G--QTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
            G  + + ++VT      N   G + +  ++T +  +E K           + +    VA+
Sbjct: 639  GTSRIVSLVVTPIRDIDNQINGYLGIATDITERRIIEQKLIAERARLSAFVKNAPAAVAM 698

Query: 450  FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
               + R    +  +   ++     +   +H     +      +      + A  I   ++
Sbjct: 699  LDNEMRYIAVSNRWLEDYQLTGTDVIGRSHYDLFGSVSVNRRSMHQW--VLAGNIERKEE 756

Query: 510  ERKSLQG--TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            +   L     ++ ++  +  +          M+   N+T  ++    L        +A+ 
Sbjct: 757  DTLILPNINEVQYITWEMRPWYQYDGKIGGMMMFTQNITSMIKQREELKNAKLHAEQANI 816

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K+ F+ ++S+E+R+PL  +IGFTDL+  +K   LN  Q QY+  ++ S+  LL+++NDI
Sbjct: 817  AKSEFLANMSHEIRTPLNGVIGFTDLVLKTK---LNETQQQYLSIVNQSANALLSIINDI 873

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
            LD + ++AG ++L+     L ++  +    I  ++    + + +     L     AD  R
Sbjct: 874  LDFSKIEAGKLELDAERCDLYEMSCQATDIITYQVQTKGLEMLLNISPDLPRFIYADTVR 933

Query: 687  LLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            L QI   +L NA  F+ +G       +L    DN    F V++ G  I  +    +F  F
Sbjct: 934  LKQILVNLLGNASKFTDQGEIELKIEVLSTTGDNTSMRFGVRDTGIGIKPEKQAKIFEAF 993

Query: 743  VSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                        G GLGL+I    + L G  + + S     +    
Sbjct: 994  SQEDGSTTKKYGGTGLGLTISNKLLGLMGSKLQLESVPGKGSLFYF 1039



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 88/592 (14%), Positives = 177/592 (29%), Gaps = 77/592 (13%)

Query: 42  ILLIRQRNSLAKKVNETYSFLSEICDQ--LSKYHSLLTENNCLTIVWDGKDETPEIIGQL 99
           +L+ +Q+  L     E  S + E   +  L  + SL   +N +  V        ++    
Sbjct: 138 LLISKQKRGLHLLAIEVMSLIVERRQKAELRNFESLFKLSNDMICVAGTDGFFKKVN--- 194

Query: 100 HQRIDIPQTDTDLL---SFENWLKFHHYIKLSKATEKLR--KEGQSFDLVAETQNDCA-- 152
               ++   DT++L   S  +++      K  +  ++L   K+  +F     TQN     
Sbjct: 195 PAFKNVLGWDTEVLLESSLYDFVHPDDLKKTRQEVQRLAMGKQTTNFTHRFRTQNKQYKI 254

Query: 153 --IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
                    +    F     +    +      L  ++ +         F++    +   D
Sbjct: 255 LQWVASPDPTTGSLFAIARDITNERAREMALILSEERAT-------AFFENSQGFMCTHD 307

Query: 211 QAGDILWANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
             G  L  N +          E         I  SR L   +    + +  + +     T
Sbjct: 308 LQGRFLSVNSAGATILGYTKDEILQRSLFDIIPASRHLLINDYLAEIAAKGSSKGQMI-T 366

Query: 266 VSTLEHGNNKSYKIVRVLNSFG---EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI- 321
            S    GN   Y       S G     G AID+++   + D L  T E L   T ++A  
Sbjct: 367 RSKNGGGNIWMYNNKLQNASDGNSYVIGNAIDITERHRLEDDLRRTKEALEQ-TNSVARV 425

Query: 322 ----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
                D  +          E+  +   +    P  D  + F +              +E 
Sbjct: 426 GGWELDIEKQNISWTAITKEIHGVSADY---QPRLDNAIRFYKEGKS----------RER 472

Query: 378 IFSVYKSSETHKDTWHLP------NGQTLHVIVTSNPR------GGTIWMFENLTVQVDL 425
           I  V   + ++   W L        G+ + V    N              F+++      
Sbjct: 473 ITEVINLAISNGTPWDLELQIVNTQGREIWVRAIGNAEFENGMCKRIYGTFQDIDETKKT 532

Query: 426 ETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI- 483
               NT  K+  + +   SE  +     +G I + N     L     + +        I 
Sbjct: 533 AIAVNTSRKLFKDLLYAASEVSIIATDVNGLITVFNKGAEKLTGYAADEMVGKQTPAIIH 592

Query: 484 ---------AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                        + Y    +G+ +F  +      E        +  +  ++   + P+ 
Sbjct: 593 SPAEVNKRGEELTAHYGVSVEGFGVFVKVAQITGSEHHEWTYIKKDGTSRIVSLVVTPIR 652

Query: 535 N-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +        +    ++T+    E+ L  +   L    +   + V  +  E+R
Sbjct: 653 DIDNQINGYLGIATDITERRIIEQKLIAERARLSAFVKNAPAAVAMLDNEMR 704



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 127/364 (34%), Gaps = 58/364 (15%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA-IAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            AI  S      D++T    ++ +  +A I++ D+NR      + F     + +      
Sbjct: 20  YAILDSLSEEEFDRITELASLICDTPIALISLIDENR------QWFKSKVGLSVD---QT 70

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-----PNGQTL---- 400
           P      ++    + + E  + +  +    +   + + +   +       P+G  L    
Sbjct: 71  PRELAFCQYAIMNDHIFEVEDARLDERFKENALVTGDPNIRFYAGQPLVDPDGYVLGTLC 130

Query: 401 ------HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
                  ++++   RG  +   E +++ V  E +    ++         ++ + V G DG
Sbjct: 131 VISPEPKLLISKQKRGLHLLAIEVMSLIV--ERRQKAELRNFESLFKLSNDMICVAGTDG 188

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
             K  NPAF+++   +   L   +    +     +   +           T+F    ++ 
Sbjct: 189 FFKKVNPAFKNVLGWDTEVLLESSLYDFVHPDDLKKTRQEVQRLAMGKQTTNFTHRFRTQ 248

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFV 573
               +     +L++   P P   ++        + RA E AL    E      E    F+
Sbjct: 249 NKQYK-----ILQWVASPDPTTGSLFAIARDITNERAREMALILSEERATAFFENSQGFM 303

Query: 574 QHVSYELR-------SPLTNIIGFT--DLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              +++L+       S    I+G+T  ++L+ S    +             +S  L  L+
Sbjct: 304 --CTHDLQGRFLSVNSAGATILGYTKDEILQRSLFDIIP------------ASRHL--LI 347

Query: 625 NDIL 628
           ND L
Sbjct: 348 NDYL 351


>gi|154245571|ref|YP_001416529.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
 gi|154159656|gb|ABS66872.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
          Length = 770

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/530 (21%), Positives = 213/530 (40%), Gaps = 69/530 (13%)

Query: 320 AIFDQ-NRYLQFH-NRSFVELWEIDLAFLATNPSNDELLEFLRSANKL------------ 365
           AI+D   R +    NR    +W+ D+A       +D + E L    K             
Sbjct: 232 AIYDTVRRRIDTALNRGRCGMWDWDMAR-GRMYWSDTMFEILGLERKDELVSFGEIAKLV 290

Query: 366 -PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRGG--TIWMFE 417
            P+  +     + +     +            G  + +     +V      G   I +  
Sbjct: 291 HPDDGDLYELAQELAERPGTPVDRVFRMRTAKGDFVWLRMRAEVVQQQGEDGPHLIGIAM 350

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T    +  +  T      + I+ +SE   ++    R+ L N  F+SL +  +  +  G
Sbjct: 351 DVTEAQRMAERTVTADMRLRDAIESISEAFVLWDSQNRLVLCNSKFQSLHELPDEAIHAG 410

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T    IA+        +               E  S     +L +   L+ +     +  
Sbjct: 411 TPFDVIASVGRHPITRTPLKPEDK-------PEEGSRAFEAQLSNGRWLKIAERRTKDNG 463

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRK--------------------------------- 564
            +    ++T   R E  L +  + L                                   
Sbjct: 464 YVSVGTDITTMKRHEERLMDNEKRLMALVADLRKSQQTLEHQAQQLAELAEKYSEERNKA 523

Query: 565 --ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621
             A+  K+ F+ ++S+ELR+PL  IIGF++++++   G L + K ++Y   I  S T LL
Sbjct: 524 EDANRAKSEFLANMSHELRTPLNAIIGFSEIMESGMFGPLGSEKYAEYCTDIKGSGTYLL 583

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +++NDILD++ ++AG M+L    + L+D++ +  +  A    E NI + + +   L +  
Sbjct: 584 DVINDILDMSKIEAGRMQLEVEDLALDDIIADALRVTAVNGDEKNIAMTMAAAPNL-AIK 642

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR+ L QI   +LSNA+ F+ +G  + +KA  +    + ++++ G  I +D    +   
Sbjct: 643 GDRRALKQILLNLLSNAVKFTPEGGNIAVKARINGAAAVIAIEDTGIGIAKDALARIGRP 702

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F           +G GLGL+I +S + LHGG + I S +   TT+  R+P
Sbjct: 703 FEQVESQFTKTHKGSGLGLAIAKSLVELHGGAMRIRSVEGRGTTVIVRLP 752



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 84/253 (33%), Gaps = 24/253 (9%)

Query: 206 VWHRD-QAGDILWANISY-------KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           +W  D   G + W++  +       K    + G + +    +   L++   +      + 
Sbjct: 252 MWDWDMARGRMYWSDTMFEILGLERKDELVSFGEIAKLVHPDDGDLYELAQELAERPGTP 311

Query: 258 LEKNFCETVSTLE-HGNNKSYKIVRVLNSFG--EAGIAIDVSKEITVNDQLT----HTYE 310
           +++ F    +  +        ++V+     G    GIA+DV++   + ++         +
Sbjct: 312 VDRVFRMRTAKGDFVWLRMRAEVVQQQGEDGPHLIGIAMDVTEAQRMAERTVTADMRLRD 371

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            + +++ A  ++D    L   N  F  L E+    +      D +    R        L 
Sbjct: 372 AIESISEAFVLWDSQNRLVLCNSKFQSLHELPDEAIHAGTPFDVIASVGRH-PITRTPLK 430

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
            +   E     +++         L NG+ L +        G + +  ++T     E +  
Sbjct: 431 PEDKPEEGSRAFEA--------QLSNGRWLKIAERRTKDNGYVSVGTDITTMKRHEERLM 482

Query: 431 TLVKVQGETIDHL 443
              K     +  L
Sbjct: 483 DNEKRLMALVADL 495


>gi|119944259|ref|YP_941939.1| multi-sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119862863|gb|ABM02340.1| multi-sensor histidine kinase with CHASE and PAS/PAC sensory
           domains [Psychromonas ingrahamii 37]
          Length = 1255

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/518 (19%), Positives = 214/518 (41%), Gaps = 29/518 (5%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A  ++KE+++  Q     +I+         ++      F N  +  +   +L+ L    S
Sbjct: 343 ARYINKELSIERQ--RLSDIIDATNSGTWQWNIQTGEAFFNDHWPRVLGYELSELGPT-S 399

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----- 406
            +  L+F+   +K   +L+ K  ++++       E      H   G  + V+        
Sbjct: 400 FETWLKFIHPEDK---ELSIKRLQKHLSGELDYYEYETRMRHKKGG-WVWVLARGKVTTW 455

Query: 407 NPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
              G  + M    +++T Q     +      +    ++ + +G+      G ++  NPA 
Sbjct: 456 TADGKPLLMCGTHQDITKQKFATEQLQDSAALIEAILNTVVDGIITINEYGIVESINPAA 515

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             ++      +  G +I  +     R  ++                  + ++G  +  S 
Sbjct: 516 EHIFGYSATEV-IGHNITMLMPESYRSQHDGYIEHFNITGEAKIVGIDRIIEGKRKNGSI 574

Query: 524 SVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
             +E  +  +   +         ++T+  RA++AL        KA+  K+ F+  +S+E+
Sbjct: 575 FPMELGVSKVLLGEKKLFASVVRDITEQKRAKQALISAKTEAEKANLAKSQFLAAMSHEI 634

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  +IG  D+L+ S   SL   Q   V+ I  S+  LL+++ DILD + ++AG + +
Sbjct: 635 RTPMNGVIGMVDVLQQS---SLKGFQVDMVDTIRDSAFSLLSIIEDILDFSKIEAGKLDI 691

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAM 699
            Y+ + + +++ +    +A    +  + + + +D  +    + D  RL QI   + +NA+
Sbjct: 692 EYAPMAVAEVVEKACFMLAHLAEKKKVELTLFTDPAIPDITLGDANRLRQIVVNLTNNAI 751

Query: 700 DF---SSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
            F   S +   V ++A   D       V +NG  + E     +F  F        RR  G
Sbjct: 752 KFSSGSDRPGRVSVQALMTDPTMLEIRVIDNGIGMNESALSKLFMPFYQADVTTTRRFGG 811

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLG++I  + + L GG +++ S+    +  +  +P +
Sbjct: 812 TGLGITIARNLVQLMGGEITVQSTLNKGSIFSVHLPLE 849



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 110/313 (35%), Gaps = 30/313 (9%)

Query: 15  EICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHS 74
            I  +    +A  G I  +  T +I  ++  R+R      +N       E+  +  +   
Sbjct: 305 RIRAVSPNLVASIGIILSVFFTVLIWFLVSGRERA-----INTARYINKELSIERQRLSD 359

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
           ++   N  T  W+ +           + +    ++    SFE WLKF H      + ++L
Sbjct: 360 IIDATNSGTWQWNIQTGEAFFNDHWPRVLGYELSELGPTSFETWLKFIHPEDKELSIKRL 419

Query: 135 RKE--GQSFDLVAETQNDCA------IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           +K   G+      ET+          +   G+V+   A  + L + G + ++ +     +
Sbjct: 420 QKHLSGELDYYEYETRMRHKKGGWVWVLARGKVTTWTADGKPLLMCGTHQDITKQKFATE 479

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
           +L +  ++ + + +++   +   ++ G +   N + +      G    + IG +  +   
Sbjct: 480 QLQDSAALIEAILNTVVDGIITINEYGIVESINPAAEH---IFGYSATEVIGHNITMLMP 536

Query: 247 EIKKRMISS-----SALEKNFCETVSTLEHGNNK-------SYKIVRVLNSF--GEAGIA 292
           E  +          +   +     +  +  G  K          + +VL       A + 
Sbjct: 537 ESYRSQHDGYIEHFNITGEAKIVGIDRIIEGKRKNGSIFPMELGVSKVLLGEKKLFASVV 596

Query: 293 IDVSKEITVNDQL 305
            D++++      L
Sbjct: 597 RDITEQKRAKQAL 609


>gi|189346602|ref|YP_001943131.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189340749|gb|ACD90152.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 887

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/369 (27%), Positives = 161/369 (43%), Gaps = 31/369 (8%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           V+    D + +GV V   + RI   N A  ++ +           I   AA   R + E 
Sbjct: 244 VREIVYDKMPDGVFVIDQEERITDCNNAALNILEIT------KNDIGKPAAKILRQWPEL 297

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSV 549
            G  + A  I   D +++ L         S  +  I+ LP+    LT       N+T   
Sbjct: 298 YGLIIEAREIKHADLKKQKLDLV------SWFDIDILALPDKNGCLTGRIIVLRNITSRK 351

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E  L    E    A+  K+ F+ ++S+E+R+PL  +IGF+ LL  +   +L+  Q  Y
Sbjct: 352 QIEYDLIATREKAEAANHAKSDFIANMSHEIRTPLNGLIGFSSLLMKT---TLDDVQFHY 408

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  ++ S+  LL L+NDILDL+ ++AG ++L    I L +L  EV    A   H  N+ +
Sbjct: 409 INTVNNSAKQLLGLINDILDLSKIEAGKLELYNEMISLQELAEEVIDMTAFTAHSKNLEL 468

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIF 721
            +     L    +AD   L QI   +L NA+ F+  G  + LK      D       FIF
Sbjct: 469 LLDIPSSLPESALADPVCLKQILINLLGNAVKFT-SGGEIELKIETVPSDNDPDYLVFIF 527

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  I  +  K +F  F        R   G GLGL+I    + L G  + + SS  
Sbjct: 528 SVRDTGIGISPENRKKIFEAFSQEDMSTTRKYGGTGLGLTISNKLLLLMGSCLQLESSPG 587

Query: 780 GVTTINCRI 788
             +     +
Sbjct: 588 QGSRFFFSL 596


>gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 785

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 168/364 (46%), Gaps = 17/364 (4%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +  E ++H+  G+ +  P+G I  +N  F  +    E  L  G     I      Y ++ 
Sbjct: 11  MLLEVLEHVPVGMILLSPEGDILAANGRFLDMVDWSEEELD-GVRFPQII-----YSSDE 64

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRAER 553
                F   +   +  +  L         S+  + +      A+ +L   ++TD    E 
Sbjct: 65  PVVSSFIDRLARGEAHQAGLLVRAARKDGSIAWWRLWGFSRGAEVLLGVFDITDQKVTEE 124

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E   ++ + K+ F+ ++S+E+R+PL  I+G T+LL+ ++   L+ +Q  YV+ I
Sbjct: 125 HLRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTR---LDEEQRDYVQQI 181

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL L+NDILD + ++AG + +      L +++ +    ++ + H+ ++ + V  
Sbjct: 182 RFSGEALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAHKKHLEVVVDI 241

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGS 728
             ++      D  R+ QI   + +NA+ F+ KG     V L   R    ++ F+V++ G 
Sbjct: 242 GEEVPRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQQRKGVAWVAFTVEDTGI 301

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE+    +F  F        RR  G GLGL+I +S + +  G + + S +   ++   
Sbjct: 302 GIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSREGEGSSFWF 361

Query: 787 RIPS 790
            +P 
Sbjct: 362 LLPL 365


>gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1305

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 119/706 (16%), Positives = 235/706 (33%), Gaps = 109/706 (15%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-------EGIV 232
           + T +  +L +  S  + L +++   V   D+   I+  N ++ +           +G+ 
Sbjct: 152 QLTRQRAELRSTSSRLRTLIENIQAGVLVEDENRSIVLVNQAFCQLFAIPVPLENLQGMN 211

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFG 287
             +    S+ LF +           L++        L+  + +  +     IV   N +G
Sbjct: 212 CHECGECSKDLFLDPQGFLDGIDLILQEGRLVVNEELQLRDGRVLERDYVPIVGDGNFYG 271

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFDQNRYLQFHNRSFVELWEIDLAF 345
                 DV+      + +  + + L     A+   ++D        N    E++  D  +
Sbjct: 272 HLWQYRDVTARKQAENAVKASEQRLKLALDAVEEGLWD-------WNLVTGEIYRSDRWY 324

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD------------TWH 393
                   +L +  +   +L    +    K  + +   +     +             W 
Sbjct: 325 EMLGYCARDLADRNQLREQLVHPDDLAAMKNLLSAHLNNQTPLYECEARMRTRSGGWLWI 384

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL--------------------V 433
           L  G+ +      NP    +    ++T +   E                           
Sbjct: 385 LDRGRVVSRDREGNPL-RMVGTHLDITERKQAEEALQQQYKRVVLLKQLTEKVRQSLQPE 443

Query: 434 KVQGETIDHLSEG-------VAVFGPDG-------------RIKL---SNPAFRSLWKTE 470
           ++   T+  + +        +     DG              I L    N     +   +
Sbjct: 444 EILKTTVQEVQQLLQCDRVLIFQLDADGSGTVVQEAVVPGWTITLGQDINDPCLRMGYLD 503

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-----------------IITSFDDERKS 513
             R    T I ++     +  +                           I+      R+ 
Sbjct: 504 YYRSGRITAIADLEQANFQPCHREFLQQFQVRANLVVPILVRQELWGLLIVHQCSQPRQW 563

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            +  L+LL     +  +             N     R    LT    A   A+  K++F+
Sbjct: 564 TELELDLLKHLADQMGVALTQAHLLEQETRNAYLLTRQNEELTAAKHAAEVANAAKSNFL 623

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             VS+E+R+P+  +IG + LL  +    L  +Q  YVE I  SS  LL ++NDILD + +
Sbjct: 624 AIVSHEIRTPMNAVIGMSGLLLDTC---LTPEQFDYVETIRNSSDTLLTIINDILDFSKI 680

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFS 692
           ++G ++L      L   + E    +A +     + +    D  L +  + D  RL QI  
Sbjct: 681 ESGKLELEEQPFDLRICIEEALDLLAPQAASKGLDLVYFIDPHLPTQIIGDITRLRQILW 740

Query: 693 KILSNAMDFSSKGSTVILKAARDNG---------DFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +LSNA+ F++ G  VI    R+           +  F+V++ G  I  +  + +F  F 
Sbjct: 741 NLLSNAVKFTAMGEVVISVQGRELEFYPPFISTYEIQFAVQDTGVGIAREQMERLFKPFS 800

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                   +  G GLGL+I +    L  G + ++S +   +T    
Sbjct: 801 QGDASMTRRYGGTGLGLAISKRLSELMRGRMWVASQEGKGSTFYFT 846


>gi|329962495|ref|ZP_08300495.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328530051|gb|EGF56939.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 939

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 132/657 (20%), Positives = 256/657 (38%), Gaps = 54/657 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF----LVWHRDQAGD-----ILW 217
              SL  I S   E       ++   S    LF  +      +    D+ G      +  
Sbjct: 301 WFSSLANIISICIELRRVKDHVARDCSFRNDLFRYMPLGYVRMSVICDKDGKPVDYTLTD 360

Query: 218 ANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            N  + +     GI     I      ++ +   K    +  L+ +  E +        K 
Sbjct: 361 INEVFAELF---GISVSDYIHRKASDIYSDVTPKLDFLTDILQSDVHEELDMCFGRTEKM 417

Query: 277 YKIVRV-LNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
             +V           + +D +  I  +  L H+ +    I  N+   + I+DQ   L   
Sbjct: 418 CHVVMYSPQKNEVVALFLDTTDTIQAHQALDHSEKLFRSIFANIPAGVEIYDQEGCLVDV 477

Query: 332 NRSFVELWEI-DLAF-----LATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           N   +E++ I D A      L +NP+     +E +++ +++  +L++    E I   Y +
Sbjct: 478 NNKDMEIFGIKDKADIIGINLFSNPNFSAAFIEQIKTKDEVDFRLDYS--FETIRGYYPT 535

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +T     +    +            G + +  + T ++D  ++            D+  
Sbjct: 536 DKTEVINLYTKISKVYDSKGVFT---GYVMINIDNTERIDTLSRICDFENFFLLISDYAK 592

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            G A      R   +   +      +EN       + ++     R + E D   +     
Sbjct: 593 VGYAKLNLLDRKGYAIKQWYKNMGEDEN-----APLTDVVGVYERMHPE-DRTRMLDFFQ 646

Query: 505 TSFDDERKSLQGTLELLSD------SVLEYSII----PLPNAQT--MLTFVNVTDSVRAE 552
            +   E K  +G L +L +      + +  +++       N Q   +    ++T+    E
Sbjct: 647 KACTGEAKDFRGELRVLREDEKNKWNWIRTNVVVNQYQPENGQIELIGVNYDITELKETE 706

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L E  E    AD +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ QY+  
Sbjct: 707 AMLIEAKEKAEAADRLKSAFLANMSHEIRTPLNAIVGFSSLLGETENV---EERKQYIAI 763

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++ +LL L++DILDL+ ++AG        + +N L  ++ +++  K+    + +   
Sbjct: 764 VEENNDLLLQLISDILDLSKIEAGTFDFTKRALDVNLLCEDIVRTMRMKVKP-GVELLFD 822

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           S       V+DR RL Q+ +  ++NA+ F+S GS  +     D     F V + G  I  
Sbjct: 823 SHLPECQIVSDRNRLNQVLANFVNNAVKFTSAGSIRVGYEPLDENRLRFYVADTGIGIEP 882

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    VF+RFV         G GLGLSI +S I   GG + + S     +     +P
Sbjct: 883 EKQVQVFDRFVKLDTF--VPGTGLGLSISKSIIEQLGGTIGVDSKVGEGSCFWFTLP 937


>gi|302382808|ref|YP_003818631.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193436|gb|ADL01008.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 761

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 156/370 (42%), Gaps = 14/370 (3%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
           + +    E ID + +G+  +  D R+ + N  +  +       L  G   R++       
Sbjct: 244 SSLNQLREAIDTMPDGLGFYDADDRLVIWNARYAEVNTELAAALEVGAKFRDMLQIGLEQ 303

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
              ++        I      R+ L  TLE  +  D  L            +    ++TD 
Sbjct: 304 GLYAEAVGREQEWIEERLAARRRLSNTLEQQISGDRWLRVQDRRTAQGGIVTVVNDITDL 363

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R  +AL E  +    A+  K+ F+ ++S+E+R+PL  +IG T  L  ++   L+  Q +
Sbjct: 364 KRDAQALAEARDTAETANRAKSEFLANMSHEIRTPLNGVIGLTQALARTE---LDHDQRE 420

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I +S   L  L++DILDLA V++G +++      L   +NE          E  ++
Sbjct: 421 ILNLIQSSGVTLQTLLSDILDLARVESGRLEIADEPFDLARAINEAAHLYGAPAAEKGLQ 480

Query: 669 IKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFS 722
             V  D    G    D  RL Q+ + ++SNA+ F++KG  V L AA            F+
Sbjct: 481 FFVDIDPAAEGWVRGDVVRLKQVLTNLVSNAVKFTAKG-FVSLNAAVGRDRDGAAILRFT 539

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G     +    +F RF        RR  G GLGL+I     ++ GGH+   S   G
Sbjct: 540 VEDTGVGFDAEAKARLFTRFEQADGTITRRFGGTGLGLAICRQLADMMGGHLDCESEAGG 599

Query: 781 VTTINCRIPS 790
            +T    +P 
Sbjct: 600 GSTFILTLPL 609



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 9/151 (5%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L    E +  +   +  +D +  L   N  + E+     A L       ++L+       
Sbjct: 246 LNQLREAIDTMPDGLGFYDADDRLVIWNARYAEVNTELAAALEVGAKFRDMLQIGLEQGL 305

Query: 365 LPEQLNWKT-WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
             E +  +  W E   +  +      +     + + L V      +GG + +  ++T   
Sbjct: 306 YAEAVGREQEWIEERLAARRRLSNTLEQQISGD-RWLRVQDRRTAQGGIVTVVNDITDLK 364

Query: 424 DLETKY-------NTLVKVQGETIDHLSEGV 447
                         T  + + E + ++S  +
Sbjct: 365 RDAQALAEARDTAETANRAKSEFLANMSHEI 395


>gi|254718765|ref|ZP_05180576.1| PAS domain S-box-containing protein [Brucella sp. 83/13]
 gi|265983743|ref|ZP_06096478.1| multi-sensor signal transduction histidine kinase [Brucella sp.
           83/13]
 gi|264662335|gb|EEZ32596.1| multi-sensor signal transduction histidine kinase [Brucella sp.
           83/13]
          Length = 783

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 242 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 295

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 296 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 353

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 354 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 413

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 414 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 473

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 474 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 532

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 533 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 593 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 652

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 653 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 711

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 712 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 768


>gi|82699508|ref|YP_414082.1| PAS domain-containing protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023837|ref|YP_001934605.1| sensory box histidine kinase [Brucella abortus S19]
 gi|260545661|ref|ZP_05821402.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|82615609|emb|CAJ10596.1| PAS domain:PAC motif:ATP-binding region, ATPase-like:Histidine
           kinase A, N-terminal:Bacterial sensor protein,
           C-terminal:Hist [Brucella melitensis biovar Abortus
           2308]
 gi|189019409|gb|ACD72131.1| sensory box histidine kinase [Brucella abortus S19]
 gi|260097068|gb|EEW80943.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
          Length = 783

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 242 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 295

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 296 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 353

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 354 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 413

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 414 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 473

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 474 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 532

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 533 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 593 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 652

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 653 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 711

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 712 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 768


>gi|94263978|ref|ZP_01287780.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455650|gb|EAT05832.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 176/440 (40%), Gaps = 22/440 (5%)

Query: 366 PEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRG-----GTIWMFE 417
           PE+  W   W   +    +     +      +G  +   V       G     G      
Sbjct: 68  PEEAEWVGAWFTKLVERREPFRALEHCSLKSDGSIVWQRVSGVPILDGAGELRGYRGAAL 127

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +           K     +D+  EG      + R+   N +   ++    + +  G
Sbjct: 128 DITQEKLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVL-G 186

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            +++ +        ++    +   + +       + +QG  +      L+ ++      +
Sbjct: 187 RNVKMLMPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQLAVSETLVGE 246

Query: 538 ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               + +  ++T+  R E    +  EA   A+  K+ F+ ++S+E+R+P+  IIG   L 
Sbjct: 247 ERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMNVIIGLGQLA 306

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S+      K   Y+E I+AS+T LL L+ND LDLA ++ G M ++     L+D+LN++
Sbjct: 307 LKSE-PPPPPKLHDYLETITASATTLLVLINDTLDLARLETGKMAIDQIPFDLSDILNKL 365

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++ +  +  E  +++       +    V D  RL Q+   + SNA+ FS KG  V L   
Sbjct: 366 EKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSDKGE-VSLSFE 424

Query: 714 RDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             +          +V++ G  I  +  +++F  F        R   G GLGLSI    + 
Sbjct: 425 MADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGLGLSIANRLVQ 484

Query: 767 LHGGHVSISSSDEGVTTINC 786
           L GG + + S     ++   
Sbjct: 485 LMGGKLEVESEPGQGSSFFF 504



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 78/270 (28%), Gaps = 20/270 (7%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQKAIGESRKLF 244
           KL+     F+ + ++    +W  D  G   +     +       E  + +          
Sbjct: 11  KLTEAEQRFRDVTEAAGEYIWELDSNGLYTFVTKPIETILGVPAEQALGRTPFDFMPPEE 70

Query: 245 KEEIKKRMISSSALEKNFC--ETVSTLEHGNNKSYKIVRVLNSFGEA------GIAIDVS 296
            E +           + F   E  S    G+    ++  V    G        G A+D++
Sbjct: 71  AEWVGAWFTKLVERREPFRALEHCSLKSDGSIVWQRVSGVPILDGAGELRGYRGAALDIT 130

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +E      L    +    IL N        D  R +   N+S  +++      +      
Sbjct: 131 QEKLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVLGRNVK 190

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG- 411
             + +   S +         +  + I  + +  +  + T  +     L + V+    G  
Sbjct: 191 MLMPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIF---PLQLAVSETLVGEE 247

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGET 439
              +   +++T +   E       +     
Sbjct: 248 RLFVGSIQDITERKRQEALQRQAKEAAEAA 277


>gi|253996594|ref|YP_003048658.1| multi-sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
 gi|253983273|gb|ACT48131.1| multi-sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
          Length = 845

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 106/520 (20%), Positives = 203/520 (39%), Gaps = 53/520 (10%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           ++ ++   +  ++        N +F  +      +     +    L+F       PE+  
Sbjct: 331 MIESMPGILYFYNYEGRFLRWNHNFQSVSG----YTNREITKMHPLDFFA-----PEEK- 380

Query: 371 WKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSN-----PRGGTIWMFENLTVQVD 424
                  I  V+   +   +   L  +G+      T            + M  +++ + +
Sbjct: 381 -AAVANKISEVFTKGQAFVEASLLSKDGKKTPYFFTGRNVTFKGTDCLVGMGIDISERKN 439

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI---- 480
            E K N   +  GE ++  +  +  +   G I   N      +    +++     I    
Sbjct: 440 AELKLNESEQKYGELVESANSIILRWNAQGYITFLNSFGLHFFGYAFDQIVGKHVIGTIV 499

Query: 481 -------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSI 530
                  R++     +   ++  ++      T  + ER  +  T +++ D    V+E   
Sbjct: 500 PNTDSAGRDLQMLMQQICLDTKVFEQNINENTRSNGERVWISWTNKVVLDGQGHVVEILS 559

Query: 531 I------PLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRS 582
           I       L   Q +       +    ER   L         AD+IK++F+  +S+ELR+
Sbjct: 560 IGNDITERLLAEQEIRELNASLEKRVTERTEELQTALIRAEAADKIKSAFLATMSHELRT 619

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL +IIGFT ++     G LN++Q++ +  +  S+  LL L+ND+LD++ ++AG +++N 
Sbjct: 620 PLNSIIGFTGIILQGLAGPLNNEQTKQLGMVRGSARHLLELINDVLDISKIEAGQLEVNS 679

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            T  L  L+  V  S+   + +  + +      +LG  V+DR+RL QI   +++NA  F+
Sbjct: 680 ETFNLVALIERVVNSLTPMIEKKGLVLHTSISKELGEIVSDRRRLEQILINLVNNAAKFT 739

Query: 703 SKGSTVILKAARDNG-----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RG 749
            KGS + + A   N                SV + G  I  D    +F  F         
Sbjct: 740 EKGS-ITITAEIVNDLKDSLDTTPTRFLKLSVIDTGIGIKPDDLDLLFKPFHQIDSGLSR 798

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              G GLGL+I    + L GG +   S     +     +P
Sbjct: 799 LHEGTGLGLAICRRLLELMGGQIYAVSEWSTGSKFTVLLP 838



 Score = 45.3 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 54/159 (33%), Gaps = 17/159 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           ++S +            +       I I D   Y    N S   +       L    + D
Sbjct: 13  EISNQSVHQIGEASYRALFEYAPDGILIADAQSYYLDANPSICNMLGYTRDELIGMHATD 72

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTL--HVIVTSNPR 409
            ++      +++P         ++   + ++   +   W     +G      ++ T+ P 
Sbjct: 73  IVV-----QSEVPH-------IQSALDIIQTKSDYTREWLLRRKDGSVFSAEIMATTMPD 120

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           G  + +  ++TV  + + + + L ++    +  +++ + 
Sbjct: 121 GSLLGLIRDITVLKEQQREISQLSRLY-AALTKINQAII 158


>gi|163842891|ref|YP_001627295.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|163673614|gb|ABY37725.1| PAS domain S-box [Brucella suis ATCC 23445]
          Length = 783

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 242 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 295

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 296 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 353

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 354 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 413

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 414 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 473

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 474 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 532

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 533 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 593 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 652

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 653 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 711

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 712 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 768


>gi|222056634|ref|YP_002538996.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565923|gb|ACM21895.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 591

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 167/393 (42%), Gaps = 25/393 (6%)

Query: 400 LHVIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIK 457
           L V   S+   G + +   +++ +++ +       + + +TI   + EG+ V    G I 
Sbjct: 215 LRVPRESSDEVGELAVVMNDMSERIEAQLSSIMAERNRLDTILRGMGEGLMVTDAQGIIT 274

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L NPAFR ++  +E+    G  +  ++        +      +  I+    + ++ +   
Sbjct: 275 LVNPAFRKVFSVDEDV--EGRPLIEVSR-------QPALHAAYRKIMADGIERQEEMS-- 323

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L    D  +    +PL +   +   V          A+      L++    +  FV +VS
Sbjct: 324 LNGEKDGNILTHWVPLIDGNRLTGVV----------AVFHDISDLKRLAATRRDFVANVS 373

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ I G+ + L    L S   +  ++++ I   +  L  L+ D+L L+ +++G 
Sbjct: 374 HELRTPVSVIQGYAETLLAGALESDPDRARRFIQVIHNHAERLSALIADLLTLSELESGK 433

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + L    + L   + +    ++ +  +  I +   +       +AD+ +L Q+   +L N
Sbjct: 434 VLLEPHPLNLRSAVKQAMSLLSQRATDKGITLDTGNIEASRFVLADKGKLDQVLVNLLDN 493

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ ++     V + A  +      SV + G  IP      +F RF          + G G
Sbjct: 494 AIKYTPGNGKVTVTAEDEAEMLKISVTDTGLGIPAKDLPRIFERFYRVDEARSRDKGGTG 553

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSIV+  +  HGG +S+ S     +T +  +
Sbjct: 554 LGLSIVKHIVQSHGGMISVKSIPGEGSTFSFTL 586



 Score = 44.5 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 40/148 (27%), Gaps = 26/148 (17%)

Query: 294 DVSKEITVN-----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           D+S+ I         +      IL  +   + + D    +   N +F +++ +D      
Sbjct: 234 DMSERIEAQLSSIMAERNRLDTILRGMGEGLMVTDAQGIITLVNPAFRKVFSVDED---- 289

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL---PNG---QTLHV 402
                           L E             +       ++   L    +G        
Sbjct: 290 -----------VEGRPLIEVSRQPALHAAYRKIMADGIERQEEMSLNGEKDGNILTHWVP 338

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYN 430
           ++  N   G + +F +++    L     
Sbjct: 339 LIDGNRLTGVVAVFHDISDLKRLAATRR 366


>gi|254479591|ref|ZP_05092901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034465|gb|EEB75229.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 571

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/399 (22%), Positives = 160/399 (40%), Gaps = 53/399 (13%)

Query: 400 LHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGP 452
           + + V S+   G +  MF  L+ ++       TL  +QGE       I  + +GV     
Sbjct: 212 IKINVKSDDEIGKLGEMFNFLSSRLK-----ETLNDIQGEKNKIEAIIKFMKDGVVAADA 266

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            G I   N A   +      +LS G  +  +              D              
Sbjct: 267 KGNIIHYNEAAEKMLN---KKLSLGMPVEEVLPLKEAENPIPMTCD-------------- 309

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                     + VL  +   +     +  +V V   +  +  L          D+++  F
Sbjct: 310 ----------NRVLMINAASVKINNQVEGYVYVMHDITEQHKL----------DQMRKEF 349

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           V +VS+ELR+PL  I  + + L  + + +  SK  +++  I   +  +  LV D+L L+ 
Sbjct: 350 VANVSHELRTPLATIKSYVETLLYNDVDTEYSK--KFLRIIETETDRMTRLVKDLLLLSK 407

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +D+    L       N+++  V  S++ +  +    + +     L     D+ ++ Q+  
Sbjct: 408 MDSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVDKDKVEQMAM 467

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            I++NA+ ++ +G  + +  A D     F+VK+NG  IP++    +F RF        R 
Sbjct: 468 NIINNAIKYTPEGGVIEISTAYDEEGVTFTVKDNGIGIPKEDLPRIFERFYRVDKARSRE 527

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGLSIV+  + LH G V I S     T +  ++P
Sbjct: 528 LGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLP 566


>gi|193213739|ref|YP_001994938.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087216|gb|ACF12491.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 787

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 166/389 (42%), Gaps = 37/389 (9%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGR-------IKLSNPAFRSLWKTEENRLSPGTH 479
            K    +++    + + ++ V +    G+       +   N AF          L+ G  
Sbjct: 124 QKSAERLRLLESVVVNGNDAVLIAEHTGKSSGGYPKVIYINRAF---------TLATGYE 174

Query: 480 IRNIAATCSR-YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPN 535
           +  +    S   + E         I  +           +    D  +   + +I+P+ +
Sbjct: 175 LEEVIEKPSDVLFGEKTSQRELVKIRKAMKGNESVRTELICYKKDGAVFWNDVNIVPVKD 234

Query: 536 AQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              + T       ++T   + E AL +      ++   K  F+ ++S+E+R+P+  +IG 
Sbjct: 235 ENGIYTHWVSVHRDITHRKKTEEALVKAKILAEESMRSKERFLANMSHEIRTPMNAVIGM 294

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL  +    L+S+Q++ V+ I  SS  LL ++NDILD + +++G +        L+ L
Sbjct: 295 TNLLLRT---PLSSEQAECVDIIKQSSENLLVIINDILDFSKIESGKITFESIPFSLHSL 351

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L +   + + K  E ++ + +  D     S + D  RL QI   ++ NA+ F+ KG  ++
Sbjct: 352 LKKTISTFSLKASEKDLSLSLSLDASCPDSVMGDSVRLNQILVNLVGNALKFTEKG-KIV 410

Query: 710 LKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVE 762
           +K   D     +   +FS+ + G  I  +  +++F  F         +  G GLGL+I +
Sbjct: 411 VKVQLDRRTPTHSVVLFSISDTGIGIDAEKQETIFESFTQAGNDTTRKFGGTGLGLAITK 470

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + L GG + + S      T +  +P K
Sbjct: 471 KLVELQGGKIWVKSELGVGATFSFALPLK 499


>gi|306845222|ref|ZP_07477798.1| PAS domain S-box-containing protein [Brucella sp. BO1]
 gi|306274381|gb|EFM56188.1| PAS domain S-box-containing protein [Brucella sp. BO1]
          Length = 783

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 242 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 295

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 296 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 353

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 354 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 413

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 414 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 473

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 474 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 532

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 533 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 593 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 652

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 653 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 711

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 712 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 768


>gi|253571977|ref|ZP_04849382.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838574|gb|EES66660.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 883

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 209/515 (40%), Gaps = 36/515 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-------LAFLATN 349
           ++  +         I  N+   + I+D+   L   N   +++  I        L F    
Sbjct: 385 EQAALARSERLFKNIFANIPAGVEIYDKEGNLVDLNERDMDILGISDKSEVIGLNFFENP 444

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             + ++LE +R ++    +  +          Y+  +      +    +   +       
Sbjct: 445 NVDAQILESIRKSSITDFRARYSFECARHTGYYRPLKAGVIELYT---KVRKLYDNHGNL 501

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I +  + T ++D     +    +     D+   G A      ++ L N    ++ + 
Sbjct: 502 TGYILINMDNTERIDALKPISDFENLFLLISDYAKVGYA------KLNLLNRQGYAIKQW 555

Query: 470 EENRL-SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL------- 521
            +N      T + ++    S+ + + D   + A    +   + K+ +G + +L       
Sbjct: 556 FKNMGEDENTPLSDVVGVYSKMHPD-DRSRMLAFFEEAKKGKAKAFKGEMRILRPGTKNE 614

Query: 522 -----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                ++ VL          + +    ++T     E  L E  E   ++D +K++F+ ++
Sbjct: 615 WNWVRTNVVLNLYEPEKGQVELIGVNYDITALKETEAKLIEAKEKAEESDRLKSAFLANM 674

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+ L+  ++      ++ QY++ +  ++ +LL L++DILDL+ ++AG
Sbjct: 675 SHEIRTPLNAIVGFSSLMVDTEDM---EERRQYMDIVEENNDLLLQLISDILDLSKIEAG 731

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
                   + +N L  ++  ++  K    N+ I           ++DR RL Q+ S  ++
Sbjct: 732 TFDFTEREVDVNLLCEDIVLAMRMKARP-NVEILFDRHLPECRIMSDRNRLHQVISNFVN 790

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA+ F+ +G+  +     D     F + + G  I  +M   +F RFV         G GL
Sbjct: 791 NALKFTEEGNIRVGYDQLDEAHLRFYIADTGIGIEPEMQNEIFERFVKLNSFVH--GTGL 848

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI  S +   GG + + S  E  +     +P K
Sbjct: 849 GLSICRSIVEQLGGEIGVDSEPEKGSCFWFTLPIK 883


>gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 989

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/642 (18%), Positives = 235/642 (36%), Gaps = 48/642 (7%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRK 242
             ++L      + +   S+   V   D  G + + N++ +  T  +      + +GE   
Sbjct: 129 AERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLGEVFS 188

Query: 243 LFKE------EIKKRMISSSALEKNFCET-VSTLEHGNNKSYKIVRVLNSF------GEA 289
           L  E      E     +  +  +       +     G++   +      +       G  
Sbjct: 189 LHDENTHAPIEDPMAAVLQTGSDGGLPARAILRARGGSDLPVECTGTPMTDERGVRQGIV 248

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELWEIDLA 344
            +  DV+++    +      E    L +A     + +++ +     H R F     I   
Sbjct: 249 IVFRDVTQKRRAQEA-EILRETNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSNI-YE 306

Query: 345 FLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           +L  +     L      +   P+  +       +           ++     +G    V+
Sbjct: 307 WLGFDTPQARLDYEAYMSVLHPDHRDSTDRAVASFLESGDGLFELENRLRHRDGTDRWVL 366

Query: 404 VTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           V    R          +    ++T     E       +    T ++ + GVA    DGR 
Sbjct: 367 VRGTARRDAMGKPVRFVGSLVDITELKMTEQALRASEERFRGTFENAAVGVAHCDLDGRF 426

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-------RYYNESDGWDLFAAI-ITSFD 508
              N     +     + L        I A  S       R   E         + +  FD
Sbjct: 427 LRVNHRSGEIVGWPRDALQHRRLHDLIHADFSVASIERFRLLTEGKLKHYSEEVPLVRFD 486

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            ER  +  ++ L  D+  +        A  ++   ++++    E  +    +A   A   
Sbjct: 487 GERVWVTLSVALQHDASGQT-------AHVIVIIQDISERKALEETVRVAKDAAEAASRA 539

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  I+G+  +L+      L+++Q   V  I  S   LL L+NDIL
Sbjct: 540 KDQFLANISHELRTPLNGILGYAQILQRDVR--LDTRQLASVGVIEQSGQHLLTLINDIL 597

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D A + AG ++L    + L   L  + + +A +  +  + +  ++   L + V  D +RL
Sbjct: 598 DFARLGAGKLELQVGEVPLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRL 657

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-A 746
            Q+   +L+NA+ F+ +G   +  +    G   F V++ G  +  D  +++F  F     
Sbjct: 658 RQVLLNLLANAVQFTDRGEVTLSVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQAGD 717

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           H  +  G GLGL+I +  + + GG + ++SS    +     +
Sbjct: 718 HTRRSGGAGLGLAISQQLVRMMGGEIEVTSSAGEGSVFGFEL 759



 Score = 46.5 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 16/218 (7%)

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS-FDLVAETQN----DCAIKIEGR 158
           D PQ   D  ++ + L   H     +A     + G   F+L    ++    D  + + G 
Sbjct: 311 DTPQARLDYEAYMSVLHPDHRDSTDRAVASFLESGDGLFELENRLRHRDGTDRWVLVRG- 369

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
            +   A  + +   G   ++ E  +  + L      F+  F++    V H D  G  L  
Sbjct: 370 TARRDAMGKPVRFVGSLVDITELKMTEQALRASEERFRGTFENAAVGVAHCDLDGRFLRV 429

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFK----EEIKKRMISSSALEKNFCETVSTLEHGNN 274
           N    +         Q                  + R+++   L+    E       G  
Sbjct: 430 NHRSGEIVGWPRDALQHRRLHDLIHADFSVASIERFRLLTEGKLKHYSEEVPLVRFDGER 489

Query: 275 KSYKIVRVLNSFGEAGIA------IDVSKEITVNDQLT 306
               +   L        A       D+S+   + + + 
Sbjct: 490 VWVTLSVALQHDASGQTAHVIVIIQDISERKALEETVR 527


>gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 974

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/577 (17%), Positives = 207/577 (35%), Gaps = 35/577 (6%)

Query: 237 IGESRKLFKE-EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-AGIAID 294
           +G  R+L  E ++++     + L+  F      +     +   ++            A+D
Sbjct: 115 LGRVRQLMSELDLRRAKGQKAELDIVFGGKRHHVSADARQMADLLLSTYENAVIQSRALD 174

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                 + ++      ++ +L   I + D    +   N ++  +                
Sbjct: 175 -RANKDLAEKEALLRAVIASLPAQIMVLDAQGRITATNEAWEHMGRNSPLIPGV---LGR 230

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNP---R 409
               +       E +   +    +  V   +  +   +     +GQ   +++ ++P   R
Sbjct: 231 TFGHIARQGLCSEDIALDSVAAAVHEVAAGTRKNFSSELCVQSDGQQRWLLLYASPMSDR 290

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GG +    ++T     E           +       G   +   G   + +     +   
Sbjct: 291 GGAVVTHMDITESKRAEQALRRSEANLAKAQHLAMLGSFEWLSKGDAFIWSDELYRILGY 350

Query: 470 EENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVL 526
           +   + PG    +R++ A  S+ + +                      G   + L  +  
Sbjct: 351 QPGSVQPGRDFLLRHLHAEDSQAFVKCLLDTARRGTPFELQFRFMRQDGVERIGLCQAEA 410

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E+       ++ + T  +VT     ER L    EA      +K+ F+ ++S+E+R+PL  
Sbjct: 411 EFDATG-KLSRILGTVQDVTRQKLLERELVRAKEAAEAGSRVKSEFLANMSHEIRTPLNG 469

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G T+L   +    L  +Q +Y+  + AS+  L  LV DILD + ++AG ++L      
Sbjct: 470 ILGMTELTLRT---GLTREQREYLSMVKASADALATLVGDILDFSRIEAGKLELERKDFR 526

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
           L ++L    + +  +     + + +  D  +      D  RL Q+   ++SNA+ F+  G
Sbjct: 527 LREILQAALKPMEMQAEAKGLHLTLRIDPAVPEHLHGDAGRLRQVLLNLVSNAIKFTPSG 586

Query: 706 STVILKAARDNG-------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
             + +                    + +FSV + G  I   + + VF+ F         Q
Sbjct: 587 G-IDIDVLPTATSHTPSGQEPDHKFELLFSVADTGIGIDTQLQERVFDIFTQGDSSLSRQ 645

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             G GLGL+I    + L GG + + S+     T N  
Sbjct: 646 YEGTGLGLAISRQLVELMGGAIWVESAIGQGATFNFT 682



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 106/363 (29%), Gaps = 58/363 (15%)

Query: 125 IKLSKATEKLRKEGQSFDLVAE-TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
            +L    +  R +GQ  +L          +  + R     A L + + +    +      
Sbjct: 119 RQLMSELDLRRAKGQKAELDIVFGGKRHHVSADAR---QMADLLLSTYENAVIQSRALDR 175

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF---------- 233
             K L+   ++ + +  SL   +   D  G I   N +++       ++           
Sbjct: 176 ANKDLAEKEALLRAVIASLPAQIMVLDAQGRITATNEAWEHMGRNSPLIPGVLGRTFGHI 235

Query: 234 -QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSFGEAG 290
            ++ +                 ++   KNF   +     G  +        + +  G   
Sbjct: 236 ARQGLCSEDIALDSVAAAVHEVAAGTRKNFSSELCVQSDGQQRWLLLYASPMSDRGGAVV 295

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ-----FHNRSFVELWEIDLAF 345
             +D+++       L  +   L      +A+     +L        +     +       
Sbjct: 296 THMDITESKRAEQALRRSEANLAKAQH-LAMLGSFEWLSKGDAFIWSDELYRILGYQPG- 353

Query: 346 LATNPSNDELLEFLR--------------SANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
            +  P  D LL  L               +    P +L ++  +++   V +      + 
Sbjct: 354 -SVQPGRDFLLRHLHAEDSQAFVKCLLDTARRGTPFELQFRFMRQD--GVERIGLCQAEA 410

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL-------VKVQGETIDHLS 444
                G+   ++ T           +++T Q  LE +            +V+ E + ++S
Sbjct: 411 EFDATGKLSRILGT----------VQDVTRQKLLERELVRAKEAAEAGSRVKSEFLANMS 460

Query: 445 EGV 447
             +
Sbjct: 461 HEI 463


>gi|300867587|ref|ZP_07112236.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334394|emb|CBN57406.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 780

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/512 (19%), Positives = 188/512 (36%), Gaps = 34/512 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E                +   + + D +  +   N +  ELW    + +      D + 
Sbjct: 130 AEEAARLLAREWQTTFDAIADLVCLLDSDGSIVRCNCAARELWGKSESEIKGCFYQDLIQ 189

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----G 411
           + + +               N+F   + +   ++       +   V             G
Sbjct: 190 DTIGATEV------------NLFIRARETGRRQNLELRFGDRWFSVTADPILGDRGNFAG 237

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTE 470
            +W+  ++T +   E+      +     +D+  +  +      G I   +   + +   E
Sbjct: 238 AVWIVADITDRKQAESAQRETEERFRLLLDNAQDYAIFFLDAQGYIIRWSVGAQRILGYE 297

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYS 529
           E          +I  T       +D  +L  A+     +DER  ++        S +  S
Sbjct: 298 EAEAIGQPT--SIIFTPEDLAAGTDKLELEQAVAAGQAEDERWHIRKDGSRFWASGILTS 355

Query: 530 IIPLPNAQTM-LTFVNVTDSVRAERAL-------TEKNEALRKADEIKNSFVQHVSYELR 581
           +      +       + T+  +AE                   A+ +K+ F+  +S+ELR
Sbjct: 356 LQDEAGLRGFAKIMRDFTERKQAEDERAQLLIREQNARTQAETANRMKDEFLATLSHELR 415

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           SPL  ++G+  LL T K     +  ++ +E I  S+     LV D+LD++ +  G ++LN
Sbjct: 416 SPLNAMLGWLRLLNTRKFDEKTT--AKAMETIERSARAQAQLVEDLLDVSRIIQGKVRLN 473

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L  ++     ++        IR++ I D   G    D  RL QI   +LSNA+ F
Sbjct: 474 VRPVELVTVIEAALDTVRPAAEAKEIRLQTIFDSTGGLVAGDSDRLQQIVWNLLSNAVKF 533

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           + KG  V +   R N     SV++ G  I  D    VF+RF            G+G+GL+
Sbjct: 534 TLKGGQVQVYLERVNSHVEISVRDTGLGIKPDFLPFVFDRFRQADSSIARTYTGLGIGLA 593

Query: 760 IVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
           IV   + LHGG V   S  +    T   ++P 
Sbjct: 594 IVRHLVELHGGSVRAQSEGEGKGATFTIKLPL 625



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 95/309 (30%), Gaps = 35/309 (11%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           +  + L    + L  T    +        ++  FD++  LV   D  G I+  N + ++ 
Sbjct: 112 VEPIELVATVNALLRTRKAEEAARLLAREWQTTFDAIADLVCLLDSDGSIVRCNCAAREL 171

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR--VL 283
                   +      + L ++ I    ++     +      +      ++ + +    +L
Sbjct: 172 WGKSESEIKGCFY--QDLIQDTIGATEVNLFIRARETGRRQNLELRFGDRWFSVTADPIL 229

Query: 284 NSFGEAGIAI----DVSKEITVNDQLTHTYE----ILHNLTV-AIAIFDQNRYLQFHNRS 334
              G    A+    D++           T E    +L N    AI   D   Y+   +  
Sbjct: 230 GDRGNFAGAVWIVADITDRKQAESAQRETEERFRLLLDNAQDYAIFFLDAQGYIIRWSVG 289

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH- 393
              +   + A     P++             PE L   T K  +     + +   + WH 
Sbjct: 290 AQRILGYEEAEAIGQPTSIIF---------TPEDLAAGTDKLELEQAVAAGQAEDERWHI 340

Query: 394 LPNGQTLHV--IVTSNPRG----GTIWMFENLTVQVDLETKYNTLV------KVQGETID 441
             +G       I+TS        G   +  + T +   E +   L+      + Q ET +
Sbjct: 341 RKDGSRFWASGILTSLQDEAGLRGFAKIMRDFTERKQAEDERAQLLIREQNARTQAETAN 400

Query: 442 HLSEGVAVF 450
            + +     
Sbjct: 401 RMKDEFLAT 409



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 15/154 (9%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +     L      E     L +    T D +++ V +   DG I   N A R LW   E
Sbjct: 117 LVATVNALLRTRKAEEAARLLAREWQTTFDAIADLVCLLDSDGSIVRCNCAARELWGKSE 176

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           + +    +   I  T           ++   I       R++L+       D     +  
Sbjct: 177 SEIKGCFYQDLIQDTIG-------ATEVNLFIRARETGRRQNLEL---RFGDRWFSVTAD 226

Query: 532 PLPN-----AQTMLTFVNVTDSVRAERALTEKNE 560
           P+       A  +    ++TD  +AE A  E  E
Sbjct: 227 PILGDRGNFAGAVWIVADITDRKQAESAQRETEE 260


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
          Length = 1329

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 110/549 (20%), Positives = 206/549 (37%), Gaps = 74/549 (13%)

Query: 296  SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            +K   +N+      E  HNL      AI I  Q+  L F N + V L  ++ A       
Sbjct: 514  AKTNQINENNKFIVESYHNLVEVYPEAILIVSQDD-LVFVNSAAVRLLGVNSAGELLGKK 572

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---- 407
                +EF+   ++   + N K+ K N     +     +  +   +G+ ++V         
Sbjct: 573  ---FIEFVHPQHREEIEENLKSLKTNQ----RLIPLQEVKFLQADGRIIYVETVGAFLTY 625

Query: 408  -PRGGTIWMFENLTVQVDLE-------------------------TKYNTLVKVQGETID 441
              +     +  ++T +   E                          +  + +  Q  T D
Sbjct: 626  QNQPAAQIVARDITRRKQTELALRKTKDELELRVNQRTSELINVNHQLQSQLDEQKRTQD 685

Query: 442  HL--------------SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
             L               + +        I L N     ++      +        +    
Sbjct: 686  ALRISENRFEAILSIADDAIISIDNSQGITLFNQGAEKIFGYTAEEVLGKKLDLLLPTRF 745

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            ++ +         ++       ER+ + G  +  S+   E SI  L      +  V + D
Sbjct: 746  AQEHRNHVSTFGKSSAHARRMGERQEIFGCRKDGSEFPAEASISKLDLGPESVYTVILRD 805

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                ++            +++K+ FV  VS+ELR+PLT+I G   +L +  L + + +  
Sbjct: 806  ITERKQ-----------VEKMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSTTSEQGK 854

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + ++  + S+  L+ L+NDILD+  +++G +K+      L DL+N     +     +  +
Sbjct: 855  RLLQIATDSTERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAGV 914

Query: 668  -----RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
                      S+       AD  R++Q  + + SNA+ FS  GSTV L         + +
Sbjct: 915  SLSIQNSNSSSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVT 974

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  IPED  +S+F RF        R   G GLGL+I +S +  HGG + + S    
Sbjct: 975  VQDTGRGIPEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSVLGQ 1034

Query: 781  VTTINCRIP 789
             ++    +P
Sbjct: 1035 GSSFYFTLP 1043



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 73/235 (31%), Gaps = 31/235 (13%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
             G I++         ET G         + ++   +I +R  +  AL K   E    + 
Sbjct: 609 ADGRIIYV--------ETVGAFLTYQNQPAAQIVARDITRRKQTELALRKTKDELELRV- 659

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNR 326
             N ++ +++ V +          + ++    D L         IL     AI   D ++
Sbjct: 660 --NQRTSELINVNHQLQSQ-----LDEQKRTQDALRISENRFEAILSIADDAIISIDNSQ 712

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            +   N+   +++      +         L+ L       E  N  +      +  +   
Sbjct: 713 GITLFNQGAEKIFGYTAEEVLGKK-----LDLLLPTRFAQEHRNHVSTFGKSSAHARRMG 767

Query: 387 THKDTW-HLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKV 435
             ++ +    +G       + +     P      +  ++T +  +E   +  V V
Sbjct: 768 ERQEIFGCRKDGSEFPAEASISKLDLGPESVYTVILRDITERKQVEKMKDEFVSV 822


>gi|225627123|ref|ZP_03785161.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|225617958|gb|EEH15002.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
          Length = 798

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 257 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 310

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 311 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 368

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 369 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 428

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 429 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 488

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 489 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 547

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 548 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 607

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 608 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 667

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 668 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 726

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 727 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 783


>gi|160896955|ref|YP_001562537.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160362539|gb|ABX34152.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1303

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 123/651 (18%), Positives = 235/651 (36%), Gaps = 81/651 (12%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLF-KE 246
            +   + + +      LV+ +D+ G   +AN +  +     G   +  +G+  ++LF   
Sbjct: 140 QDSTRLLETVMRETPDLVFAKDRQGRYTFANPATARFA---GRAPEDIVGKTDQELFSDS 196

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEIT 300
                       +         L  G  + ++  ++        + G  GIA D++    
Sbjct: 197 SFTDSDRRVLDSDAPVVMDDHLLVDGQRRIFQSTKIPYRDAEGRTVGVLGIARDITLMRQ 256

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN----------P 350
              QL  +Y++L      +A       L          WE+D      +          P
Sbjct: 257 TESQLQKSYDVLRQ-AEQLA------RLGSW------TWELDTGHFQASEMMYVMNGLDP 303

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ----TLHVIVTS 406
               L      A   P+ L   T   ++      S +       P+G+     L      
Sbjct: 304 QGPPLTRHALRAMLGPQDLARLTAAVDLCISTGQSYSIDVVQRCPDGRQFAARLMGRALR 363

Query: 407 NPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           + +G  + +    ++L+ + D   +   L        D+L  G A++  +G +       
Sbjct: 364 DEQGRIVALSGTLQDLSEREDARMRLEALA-------DNLPSG-AIYRLEGGLTQL--RL 413

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             +    EN +    H               +   L+  ++    D  +       ++  
Sbjct: 414 SYISAGIENLIGVPAHAIMADRQVYLNAIHPEDLPLYQGMMQRSIDTLRVFDCRFRVIRP 473

Query: 524 ----SVLEYSIIPLPNAQTMLTFVNVTDSVR---AERALTEKNEALRKADEIKNSFVQHV 576
                 L     P    + M+    + D  R   AE+AL +  EA   A+  K+ F+  +
Sbjct: 474 DGEIRWLRCRSAPRRCQEGMVWDGIMLDITREREAEQALQQAKEAAEAAERAKSDFLAIM 533

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  +IG T L++ +   +L S+Q  Y+E +  S++ LL ++NDILD + ++AG
Sbjct: 534 SHEIRTPMNTVIGMTRLVQQT---ALTSRQRGYLEKVERSASALLAVINDILDFSKIEAG 590

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
           ++ L      L+D+L  V  S A +  E  + +    D +L      D  RL Q+ + ++
Sbjct: 591 MLVLEEVDFALDDVLETVTASTALRAEEKGLEVVYALDPQLPPRLRGDPMRLGQVLTNLV 650

Query: 696 SNAMDFSSKGSTVI-----------------LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            NA+ F+  G  VI                    A        SV++ G  +     + +
Sbjct: 651 GNAVKFTEHGEVVISLHLAPPPVDAPADADADTTAAPLHHLCVSVRDTGIGLDASRAERL 710

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F  F         +  G GLGL+I    + L GG + + S     +     
Sbjct: 711 FQPFTQADIQTTRRHGGTGLGLAICHRLVQLMGGEIGVRSQPGQGSDFRFT 761



 Score = 41.5 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 87/287 (30%), Gaps = 44/287 (15%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHN-RSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
             + L  +     +FD+   L   N ++   L     A L     +  L          P
Sbjct: 6   YRQFLDRVPDGFLLFDEQGGLLDANAQACASLGHHKAAMLGLGIMDLWL---------DP 56

Query: 367 EQLNWKTWKE---NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           +      W++   +  ++ +     +D   LP    +H +  S  R      + +L+ + 
Sbjct: 57  DGRPRDFWRDMVVDSQALLRGRLIRRDGSSLPAEIHVHCLSLS-GRRLFFTTWHDLSERT 115

Query: 424 DLETKY------------------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
             + +                       ++    +    + V      GR   +NPA   
Sbjct: 116 GQDEQIGQPNAQLEPHLQNRTWPWQDSTRLLETVMRETPDLVFAKDRQGRYTFANPATAR 175

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS----FDDERKSLQGTLELL 521
                   +        +  T    +++S   D    ++ S      D+   + G   + 
Sbjct: 176 FAGRAPEDI--------VGKTDQELFSDSSFTDSDRRVLDSDAPVVMDDHLLVDGQRRIF 227

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             + + Y          +    ++T   + E  L +  + LR+A+++
Sbjct: 228 QSTKIPYRDAEGRTVGVLGIARDITLMRQTESQLQKSYDVLRQAEQL 274



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 61/209 (29%), Gaps = 31/209 (14%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVA--ETQNDCAIKI--EGRVSGSCAFLRILSLDGI 174
           L      +L+ A +     GQS+ +       +         GR        RI++L G 
Sbjct: 317 LGPQDLARLTAAVDLCISTGQSYSIDVVQRCPDGRQFAARLMGRALRDEQG-RIVALSGT 375

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG----DILWANISYKKNTETEG 230
             +L+E      +L         L D+L     +R + G     + + +   +       
Sbjct: 376 LQDLSEREDARMRLE-------ALADNLPSGAIYRLEGGLTQLRLSYISAGIENLIGVPA 428

Query: 231 IVFQKAIG--------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                           E   L++  +++ + +    +  F         G  +  +    
Sbjct: 429 HAIMADRQVYLNAIHPEDLPLYQGMMQRSIDTLRVFDCRFRVIRP---DGEIRWLRCRSA 485

Query: 283 L----NSFGEAGIAIDVSKEITVNDQLTH 307
                      GI +D+++E      L  
Sbjct: 486 PRRCQEGMVWDGIMLDITREREAEQALQQ 514


>gi|237815075|ref|ZP_04594073.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|237789912|gb|EEP64122.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
          Length = 798

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 257 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 310

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 311 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 368

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 369 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 428

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 429 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 488

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 489 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 547

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 548 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 607

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 608 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 667

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 668 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 726

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 727 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 783


>gi|306842114|ref|ZP_07474784.1| PAS domain S-box-containing protein [Brucella sp. BO2]
 gi|306287787|gb|EFM59215.1| PAS domain S-box-containing protein [Brucella sp. BO2]
          Length = 783

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 242 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 295

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 296 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 353

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 354 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 413

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 414 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 473

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 474 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 532

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 533 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 592

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 593 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 652

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 653 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 711

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 712 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 768


>gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5]
          Length = 651

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/521 (19%), Positives = 218/521 (41%), Gaps = 52/521 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    + +       I  N+ V + ++D+  YL        +L   DL         + L
Sbjct: 13  NAHEALFNSEKLLRNIFDNVQVGVELYDREGYLV-------DLNNKDLEIFGLKKKEEVL 65

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                    +P ++     +EN+ +  + +      ++  +G        S+ + G + +
Sbjct: 66  GVNFFRNPLVPGEI-----RENVRNGQEQAFKLDYHFNRLDG------YYSSGKNGNVQI 114

Query: 416 FENLTVQVDLETKY---------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           +  +T+  D+  +          NT +      +       ++    G++  +   F  +
Sbjct: 115 YTTVTMLYDMYGELINFVVINIDNTEINEAYSRLAEFESSFSLVSRFGKVGYA--RFDLM 172

Query: 467 WKTEENRLSPGTHIRNIAATCSR-------YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            +          ++   + T          Y +  D   +F  I      E       L 
Sbjct: 173 TRDGYAVPQWFHNLGEESDTPMPQVIGVYNYVDPEDRDAIFREIRRVKAGESNGFTLDLR 232

Query: 520 LLSDS----VLEYSIIPLP------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           +            +++  P        + +    +VT+  + E+ L E       +D +K
Sbjct: 233 VTPKGEPTGWTRVNVVRNPLNTDPSKIEMVCVNFDVTELKQTEKNLIEAKNKAEVSDRLK 292

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           ++F+ ++S+E+R+PL  I+GF++LL  +       ++ +Y+  +  ++ +LL L++DILD
Sbjct: 293 SAFLANMSHEIRTPLNAIVGFSNLLAETDDIG---ERREYMRVVEENNELLLKLISDILD 349

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           L+ ++AG  + NY  + +N +  E   S++ K+ +  + +           V D+ RL+Q
Sbjct: 350 LSKIEAGTFEFNYGRVDVNRMCEETVCSLSLKVKDKPVELIFGEHDAQCCVVGDKNRLIQ 409

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + +  ++NA+ F+ +GS + L    + G+ +F V++ GS I E+  +S+F+RFV      
Sbjct: 410 VITNFINNAVKFTDEGS-ITLGYRTEGGELLFHVEDTGSGISEEHRQSIFDRFVKLNSFA 468

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           Q  G GLGLSI +S +   GG + + S     +     IP+
Sbjct: 469 Q--GTGLGLSISKSIVEQMGGRIGVESEVGRGSRFWFTIPA 507


>gi|71906191|ref|YP_283778.1| PAS [Dechloromonas aromatica RCB]
 gi|71845812|gb|AAZ45308.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1026

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/526 (18%), Positives = 208/526 (39%), Gaps = 50/526 (9%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID----LAFLATNPSNDEL 355
            + +  T    +++ +   + + D        N   + L+ ++            +    
Sbjct: 357 RLEENETRLRTLINTMPDIVCLKDGAGRWTEANTLLLRLFALESVGYQGMTGGELAAAGH 416

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTSNPRGGTIW 414
            ++ R A    E  + + W        + +   +     + +   + +      R   + 
Sbjct: 417 FDYARLAAL--EASDEQVWLNGERLHDELTIPVEGQHDRIFDIAKVPLFAADGSRHALLT 474

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTE-EN 472
           +  ++T +V+ E    +  +     I+    GV +    GR  +  NP F  ++  +  +
Sbjct: 475 VGRDITERVETEKALRSAERKFRGLIEQSLAGVYII--QGRCFRYVNPYFARIFGYDSPD 532

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT----SFDDERKSLQGTLELLSDSVLEY 528
            +        + +   R    ++        +     SF  +RK        +  + ++Y
Sbjct: 533 EIIDQPLFEELVSPQDRQMVANNVRRRLNGEMETLHYSFVGQRKDGSPVDVEVFGTKVDY 592

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKN 570
              P      +   +++T+  +AE  L    E L +                   +  K+
Sbjct: 593 EDQP----ALIGVVIDITERKQAEAELKRHRENLEEQVNARTADLLLAKEAAEAANRAKS 648

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+ELR+P+  IIG T LL     G+ N+ Q + +  +S ++  LL+L+NDILDL
Sbjct: 649 TFLANMSHELRTPMNAIIGMTHLLIR---GNENASQREKLAKVSNAADHLLHLLNDILDL 705

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLL 688
           + ++A  + L    + ++D++         K+    ++       +L +   + D  RL 
Sbjct: 706 SKIEAERLTLEKIPLRISDIVANAISMAGEKIAAKGLQFNQQISPQLVTTELIGDPLRLR 765

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFV 743
           QI   +L NA+ F+++GS + L A+  +          S+++ G+ IP++    +F  F 
Sbjct: 766 QILLNLLDNALKFTAQGS-ISLSASVTDETSENLTIRISIEDTGTGIPDEAKDRIFAPFE 824

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  R   G GLGLSIV+  I+L  G + +SS+    +     
Sbjct: 825 QVDGSTTRQHGGTGLGLSIVKQLIHLMHGKIEVSSTPGIGSCFTLT 870



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 112/336 (33%), Gaps = 36/336 (10%)

Query: 131 TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190
               R   + FD +  +Q   +I + G + G  +F  +L  +     +   T    +L  
Sbjct: 305 IALFRSRPE-FDSITASQLPISIALIGTLIGLMSFFWLLRKNRFQQSI---TAYADRLEE 360

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
           + +  + L +++  +V  +D AG    AN    +    E + +Q   G            
Sbjct: 361 NETRLRTLINTMPDIVCLKDGAGRWTEANTLLLRLFALESVGYQGMTGGELAAAGHFDYA 420

Query: 251 RMISSSALEKNFC-------ETVSTLEHGNN-KSYKIVRVLNSFGEAG------IAIDVS 296
           R+ +  A ++          + ++    G + + + I +V     +        +  D++
Sbjct: 421 RLAALEASDEQVWLNGERLHDELTIPVEGQHDRIFDIAKVPLFAADGSRHALLTVGRDIT 480

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPS 351
           + +     L         ++      + I  Q R  ++ N  F  ++  D    +   P 
Sbjct: 481 ERVETEKALRSAERKFRGLIEQSLAGVYII-QGRCFRYVNPYFARIFGYDSPDEIIDQPL 539

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---- 407
            +EL+       ++      +     + +++     +       +G  + V V       
Sbjct: 540 FEELV--SPQDRQMVANNVRRRLNGEMETLH-----YSFVGQRKDGSPVDVEVFGTKVDY 592

Query: 408 -PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             +   I +  ++T +   E +     +   E ++ 
Sbjct: 593 EDQPALIGVVIDITERKQAEAELKRHRENLEEQVNA 628


>gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
 gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
          Length = 576

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 160/367 (43%), Gaps = 22/367 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++++  +         I+++  G+ +    G   L+N AF+  +     R+         
Sbjct: 222 EMKSAQDIQQNRLTTLIENMGSGLLLIDHRGYAVLTNKAFKEFFSITAERI--------- 272

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             T  RYY      ++   +   F  E+K  +  L  L+   +E     L  A  + T  
Sbjct: 273 --TNKRYYEVIKFPEVNKLVEEIFMTEQKIRKQLLLPLT---IERKHFELYGAPIIGTK- 326

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +  +    +      L+K ++++  FV +VS+ELR+P+T+I GF++ L    +    
Sbjct: 327 ---EEWKGIVLVFHDITELKKLEQMRKDFVANVSHELRTPITSIKGFSETLLDGAMND-K 382

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                ++  I   S  L +L+ D+LDL+ ++    +LN     + +LL EV   +  K  
Sbjct: 383 ETLEMFLNIILRESDRLQSLITDLLDLSKMEKQGFQLNVHETDMKELLIEVITILEKKPE 442

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + +I + + +D  + + V D  R+ Q+F  ++ NA+ ++  G  V +   + +   +  V
Sbjct: 443 KKDIELVLHADEAVLAEV-DSFRIKQVFINLIGNAITYTPAGGEVSVSLKQSDSVIVIEV 501

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++NG  I E     +F RF            G GLGL+IV+  I  HGG + + S     
Sbjct: 502 RDNGIGIEESEFPRIFERFYRVDKARSRDSGGTGLGLAIVKHLIEAHGGTIGVESKVNEG 561

Query: 782 TTINCRI 788
           TT    +
Sbjct: 562 TTFTVTL 568



 Score = 44.2 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 85/249 (34%), Gaps = 21/249 (8%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A ++ +  +  D Q      ++ N+   + + D   Y    N++F E + I    + TN
Sbjct: 216 LARNLQEMKSAQDIQQNRLTTLIENMGSGLLLIDHRGYAVLTNKAFKEFFSITAERI-TN 274

Query: 350 PSNDELLEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
               E+++F      + E     +  ++ +         H + +  P      +I T   
Sbjct: 275 KRYYEVIKFPEVNKLVEEIFMTEQKIRKQLLLPLTIERKHFELYGAP------IIGTKEE 328

Query: 409 RGGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
             G + +F ++T    LE            +  T +       + L +G A+   +    
Sbjct: 329 WKGIVLVFHDITELKKLEQMRKDFVANVSHELRTPITSIKGFSETLLDG-AMNDKETLEM 387

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N   R   + +          +          +E+D  +L   +IT  + + +     
Sbjct: 388 FLNIILRESDRLQSLITDLLDLSKMEKQGFQLNVHETDMKELLIEVITILEKKPEKKDIE 447

Query: 518 LELLSDSVL 526
           L L +D  +
Sbjct: 448 LVLHADEAV 456


>gi|330962181|gb|EGH62441.1| two-component sensor/regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 576

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 119/523 (22%), Positives = 208/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSTETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 TQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWDLFAAIITS------FDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D     + S      ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVISEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  IIGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAIIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G ++  Q  Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+  
Sbjct: 342 KDGMVGDMSDAQRGYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ +D   G    DR++  QI   +L+NA+ FS+ G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSAPGGWVTLSVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VPSAQAGVLEGDWPTHVFPVPPGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLAELHGGSVAVASVKDLGARFVVWLPIR 564


>gi|29347243|ref|NP_810746.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339142|gb|AAO76940.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 882

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 209/515 (40%), Gaps = 36/515 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-------LAFLATN 349
           ++  +         I  N+   + I+D+   L   N   +++  I        L F    
Sbjct: 384 EQAALARSERLFKNIFANIPAGVEIYDKEGNLVDLNERDMDILGISDKSEVIGLNFFENP 443

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             + ++LE +R ++    +  +          Y+  +      +    +   +       
Sbjct: 444 NVDAQILESIRKSSITDFRARYSFECARHTGYYRPLKAGVIELYT---KVRKLYDNHGNL 500

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I +  + T ++D     +    +     D+   G A      ++ L N    ++ + 
Sbjct: 501 TGYILINMDNTERIDALKPISDFENLFLLISDYAKVGYA------KLNLLNRQGYAIKQW 554

Query: 470 EENRL-SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL------- 521
            +N      T + ++    S+ + + D   + A    +   + K+ +G + +L       
Sbjct: 555 FKNMGEDENTPLSDVVGVYSKMHPD-DRSRMLAFFEEAKKGKAKAFKGEMRILRPGTKNE 613

Query: 522 -----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                ++ VL          + +    ++T     E  L E  E   ++D +K++F+ ++
Sbjct: 614 WNWVRTNVVLNLYEPEKGQVELIGVNYDITALKETEAKLIEAKEKAEESDRLKSAFLANM 673

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+ L+  ++      ++ QY++ +  ++ +LL L++DILDL+ ++AG
Sbjct: 674 SHEIRTPLNAIVGFSSLMVDTEDM---EERRQYMDIVEENNDLLLQLISDILDLSKIEAG 730

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
                   + +N L  ++  ++  K    N+ I           ++DR RL Q+ S  ++
Sbjct: 731 TFDFTEREVDVNLLCEDIVLAMRMKARP-NVEILFDRHLPECRIMSDRNRLHQVISNFVN 789

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA+ F+ +G+  +     D     F + + G  I  +M   +F RFV         G GL
Sbjct: 790 NALKFTEEGNIRVGYDQLDEAHLRFYIADTGIGIEPEMQNEIFERFVKLNSFVH--GTGL 847

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI  S +   GG + + S  E  +     +P K
Sbjct: 848 GLSICRSIVEQLGGEIGVDSEPEKGSCFWFTLPIK 882


>gi|160891180|ref|ZP_02072183.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|317481076|ref|ZP_07940155.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156859401|gb|EDO52832.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|316902789|gb|EFV24664.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 940

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/664 (18%), Positives = 249/664 (37%), Gaps = 66/664 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA------NI 220
              SL  + S   E      +     +    LF  +          G +  +      + 
Sbjct: 300 WFSSLANVISICIELRKTKDEAVRERTFLSNLFRYMPL--------GYVRMSIVCDEKDN 351

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK-- 278
            Y         +F   +G+    F  +        +A    +   +  +  G +K     
Sbjct: 352 PYGYYVTDANSIFADFLGKPASTFIGKTASSFSREAAPRLEYL--LDIVNTGTHKEMDMC 409

Query: 279 ----------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQ 324
                     ++          + +D +  +  +  L H+ +    I  N+   + I+D+
Sbjct: 410 FELTNKHCHVVIYSPEKNEVVALFLDTTDSVQTHLALDHSEKLFKNIFANIPAGVEIYDK 469

Query: 325 NRYLQFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           + +L   N   +E++        I +        + +L E +++ + +  +LN+    + 
Sbjct: 470 DGFLVDINNKDMEIFGVRDKQDVIGVNLFENPNVSAQLAERIQTEDMVDFRLNYA--FDR 527

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
               Y +S+  KD  HL    +       N  G  +   +N T ++D  ++         
Sbjct: 528 TEGYYSTSKQPKDVIHLYTKVSKVYDSKGNFTGYAMINIDN-TERIDAMSRICDFENFFL 586

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY--NESD 495
              D+   G A      R   +   +      +EN     T + ++    S+ Y  +   
Sbjct: 587 LISDYAKVGYAKLNLLDRKGYAIKQWYKNMGEDEN-----TQLADVVGIYSKMYPSDRRR 641

Query: 496 GWDLFAAIITS--------FDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--MLTFVNV 545
             D F+                ER   +G    +  +V+  ++    N Q   +    ++
Sbjct: 642 MLDFFSKARVGEAKHFQGEMRIERPGEKGKWNWVRTNVV-VNLFEPENGQIELIGVNYDI 700

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+    E  L E  E    AD +K++F+ ++S+E+R+PL  I+GF+ L+  +       +
Sbjct: 701 TELKETEAMLIEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSSLMGETGDM---EE 757

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + QY+  I  ++ +LL L++DILDL+ ++AG        + +N L  ++ + +  K    
Sbjct: 758 KRQYMAIIEENNDLLLQLISDILDLSKIEAGTFDFVEKELDVNMLCEDIVRFMKMKAKP- 816

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + +           V+DR RL Q+ +  ++NA+ F++ GS  +     D     F V +
Sbjct: 817 GVEVLFDRHLPECRIVSDRNRLNQVIANFVNNAIKFTTAGSIRVGYNKVDETHLRFYVAD 876

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  I  +M   +F+RF+         G GLGLSI +S I   GG + + S     +   
Sbjct: 877 TGLGIEPEMQAQIFDRFIKLNTFVH--GTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFW 934

Query: 786 CRIP 789
             +P
Sbjct: 935 FVLP 938


>gi|82702619|ref|YP_412185.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410684|gb|ABB74793.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 835

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 101/551 (18%), Positives = 208/551 (37%), Gaps = 32/551 (5%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
            R +S  A +      + T+      + ++VR      +     +   E  + +      
Sbjct: 173 SREVSPDAKQTGVSGVLVTVTE----TTELVRARAHEAKKIRFKEALAEQALRESEQRFC 228

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           + L   TV I  FD    +   N +F+E+             +DE    LR    +P   
Sbjct: 229 QALEIETVGIIFFDSENRITEANDAFLEMSGFS--------RDDERAGALRCDELIP--P 278

Query: 370 NWKTWKENIFSVYKS---SETHKDTWHLPNGQTLH--VIVTSNPRGGTIWMFENLTVQVD 424
            W+          K+      H+      +G      + +        +    ++T +  
Sbjct: 279 EWRMSTSRAAEELKAMGRVAPHEKELFRKDGSRWWALIAMKQLLGNEAVAYVVDITERKR 338

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           +E              +     +    P G     N  ++ ++      L P      + 
Sbjct: 339 VEHSLRESEARFRALAEASPALIWQVDPQGNAVYLNQRYQYMFGKSLEELMPTGWRELLH 398

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
              +  Y  +    L            ++ +G    L    L +  +    A  +   ++
Sbjct: 399 PDDAPAYVAAFERALHDRAHLRQRVRARTAEGEWRWLKSYALPWFTVRDEYAGHVGISID 458

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T++V AE AL        +AD  K+ F+  +++ELR+PL  I     L+         +
Sbjct: 459 ITEAVAAETALL-------EADRRKDEFLATLAHELRNPLAPIASALTLIAGPDGA---A 508

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +  + +  I+     ++ LV+D+L+++ + +G ++L      L  +L    ++   ++ E
Sbjct: 509 EIPRLLPVINRQVNYMVRLVDDLLEISRITSGKVELRQKPTDLAIVLRNAAEASMEQIRE 568

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + + +           D  RL QIF+ +L+NA+ ++ +G  + L A +++   + SVK
Sbjct: 569 KELELSISITDTPLIVYGDTVRLEQIFANLLNNAVRYTGRGGKIWLTARQEDHKAVVSVK 628

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-EGV 781
           +NG  I   M   +F+ F        G + G+G+GL++V+  + +HGG V  SS   +  
Sbjct: 629 DNGIGILPGMLPRLFDMFAQERRSGMGTQEGLGIGLNLVDRLVQMHGGSVEASSEGKDKG 688

Query: 782 TTINCRIPSKE 792
           +    R+P  E
Sbjct: 689 SEFTVRLPLSE 699



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 102/316 (32%), Gaps = 43/316 (13%)

Query: 29  TIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSE--ICDQLSKYHSLLTENNCLTIVW 86
            ++G+L+ T+     L+R R   AKK       L+E  + +   ++   L       I +
Sbjct: 184 GVSGVLV-TVTETTELVRARAHEAKK-IRFKEALAEQALRESEQRFCQALEIETVGIIFF 241

Query: 87  DGKDETPEIIGQLHQRIDIPQTDTDL--LSFENWLKFHHYIKLSKATEKLRKEGQ--SFD 142
           D ++   E      +     + D     L  +  +     +  S+A E+L+  G+    +
Sbjct: 242 DSENRITEANDAFLEMSGFSRDDERAGALRCDELIPPEWRMSTSRAAEELKAMGRVAPHE 301

Query: 143 LVAETQND---CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199
                ++     A+    ++ G+ A   ++ +        E       L    + F+ L 
Sbjct: 302 KELFRKDGSRWWALIAMKQLLGNEAVAYVVDIT-------ERKRVEHSLRESEARFRALA 354

Query: 200 DSLDFLVWHRDQAGDILWANISYKKNTE---------------TEGIVFQKAIGESRKLF 244
           ++   L+W  D  G+ ++ N  Y+                                R L 
Sbjct: 355 EASPALIWQVDPQGNAVYLNQRYQYMFGKSLEELMPTGWRELLHPDDAPAYVAAFERALH 414

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
                ++ + +   E  +    S         + +       G  GI+ID+++ +     
Sbjct: 415 DRAHLRQRVRARTAEGEWRWLKSYALP----WFTVRD--EYAGHVGISIDITEAVAAETA 468

Query: 305 L----THTYEILHNLT 316
           L        E L  L 
Sbjct: 469 LLEADRRKDEFLATLA 484


>gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 714

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 120/644 (18%), Positives = 235/644 (36%), Gaps = 71/644 (11%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
            + + ++L  ++D  +   D    I   N +       +     + +        EE + 
Sbjct: 96  SLDLHQLLNSTIDAAILVTDPDFRITAINETAGTMFGVDPAALPQEMTPISIHDPEEFQL 155

Query: 251 RMISSSALE-KNFCETVSTLEHGNNK----SYKIVRVLNSFGEAGIAI-----------D 294
           R      L  KN  +    L HG +     +Y        +G   +             D
Sbjct: 156 RKQHLEQLNLKNLSDEDILLLHGRDTENDWTYHRTDGSYFYGRLYMTRLQNGGFFLFITD 215

Query: 295 VSKEITVNDQLTHTYEILHNLTVAI---AIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           +S +  V   L  +      +  ++    IF  N  +   NR+   ++   L  +  +  
Sbjct: 216 ISSQKQVELHLAKSERRFRLIAESVLEAVIFHDNGVILDANRAAEIIFRTRLELMKGH-- 273

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
             ++L+F++     PE  N  +  + I   ++  E ++      +G ++ + V       
Sbjct: 274 --QILDFIQ-----PEFQN--SVTQRIMKHHE--EPYEVIGRRADGTSVEIEVFPREITY 322

Query: 412 -----TIWMFENLTVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLS 459
                 + +  ++T Q  +E               +    +   +EG  + G DG     
Sbjct: 323 EKTRMRVDVVRDMTEQKKIEKMLEREKNAIMRQRDITQSILQASNEGFLLTGEDGSFTYM 382

Query: 460 NPAFRSL---WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           N   R L        +++     +       +RY       +L A           S + 
Sbjct: 383 NVKARKLLDVPGIAPSKIQERISMIPNLDLATRYAMLQQVEELLAG-----KHSEISFRF 437

Query: 517 TLELLSDS---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           TL+   +S     E+    +   ++  +        R            +K D +K+  +
Sbjct: 438 TLQQPDESGHHYFEFYATSIKKERSRFSRHGFLFVFR-------DRTEEQKMDHVKDELI 490

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             VS+ELR+PL++I+GF +LL+  +      K ++YVE +   +  L NL+ND LD+  +
Sbjct: 491 STVSHELRTPLSSILGFMELLRYRQ--PTPEKTTRYVEIVHEEAKRLTNLLNDFLDIQRM 548

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           + G     +    L  LL E  ++       +   I  ++D       AD  ++ Q+   
Sbjct: 549 EGGKQDYAFKPFSLRQLLEETIETFGETAETH--TIHAVTDDDPILIFADEDKVKQVIIN 606

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR 751
           +LSNA+ +S     + ++  +     I SV + G  IP      +F +F    +    + 
Sbjct: 607 LLSNAIKYSPAADHIDVRLEKTADQAILSVTDYGIGIPPTAFDKLFTKFYRVDNSAVRKI 666

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI---PSKE 792
            G GLGL+I +  I  HGG +S+ S     +T    +   P K+
Sbjct: 667 GGTGLGLAICKEIIESHGGAISVESELNQGSTFTIVLELDPRKD 710



 Score = 75.0 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 76/500 (15%), Positives = 169/500 (33%), Gaps = 78/500 (15%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
                +L+  +   D+ G I +AN ++    +   +        S  L ++ +       
Sbjct: 14  HATLRALEEPIVLVDRLGIIDFANPAFHNQFQ---LSSADTSLSSFFLLEDTLFPISSRI 70

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN- 314
             +   +  T+S +E  +   + +V + +                        +++L++ 
Sbjct: 71  QVVSLPYTLTISPVEQTD---FFLVTIKS---------------------LDLHQLLNST 106

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLN 370
           +  AI + D +  +   N +   ++ +D A L    +   + +     LR  +   EQLN
Sbjct: 107 IDAAILVTDPDFRITAINETAGTMFGVDPAALPQEMTPISIHDPEEFQLRKQHL--EQLN 164

Query: 371 WKTWKENIFSVYKSSETHKD-TWHLPNGQTL--HVIVTSNPRGGTIWMFENLTVQVDLET 427
            K   +    +    +T  D T+H  +G      + +T    GG      +++ Q  +E 
Sbjct: 165 LKNLSDEDILLLHGRDTENDWTYHRTDGSYFYGRLYMTRLQNGGFFLFITDISSQKQVEL 224

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +      + + E V +F  +G I  +N A   +++T    +        I    
Sbjct: 225 HLAKSERRFRLIAESVLEAV-IFHDNGVILDANRAAEIIFRTRLELMKGH----QILDFI 279

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
              +  S    +       ++   +   GT   +   V    I        +    ++T+
Sbjct: 280 QPEFQNSVTQRIMKHHEEPYEVIGRRADGTSVEI--EVFPREITYEKTRMRVDVVRDMTE 337

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L  +  A+ +  +I  S +Q           +  GF   L T + GS      
Sbjct: 338 QKKIEKMLEREKNAIMRQRDITQSILQ----------ASNEGF---LLTGEDGSFT---- 380

Query: 608 QYVEYISASSTILLNLVNDILDL-----ATV-DAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            Y+   +            +LD+     + + +   M  N        +L +V++ +A K
Sbjct: 381 -YMNVKARK----------LLDVPGIAPSKIQERISMIPNLDLATRYAMLQQVEELLAGK 429

Query: 662 MHENNIRIKVISDGKLGSFV 681
             E + R  +    + G   
Sbjct: 430 HSEISFRFTLQQPDESGHHY 449


>gi|310795325|gb|EFQ30786.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1390

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 117/683 (17%), Positives = 252/683 (36%), Gaps = 104/683 (15%)

Query: 188  LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG----ESRKL 243
            L   I +   L D+    +    + G + + N + +     E  + + A G     S  +
Sbjct: 358  LQKMILMRDALLDNTTMPILAMWKDGSVTFPNRAARALLRHESDLEKSADGFDLLPSWTV 417

Query: 244  FKEEIKKRMISS-------SALEKNFCETVS--TLEHGNNKSYK-----IVRVLNSFGEA 289
            +  E  + +  S          EK F        +E+G  + Y      I         A
Sbjct: 418  YDAEFSRELDVSEYPISVLLRTEKPFSNMRVGMIVENGERRVYDALGEAIRDDSTGEFLA 477

Query: 290  GIA--IDVSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRS---FVELW 339
            G+    DV+K      ++    E     I   +   +     + Y  F N     +  L 
Sbjct: 478  GVVTFRDVTKMTEEITEIRERDEERFKLICDTMPQLVWTTRADGYHDFFNTRWYTYTGLT 537

Query: 340  EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--G 397
              +   L                + +PE    K W+ ++    K+ + +   +   +  G
Sbjct: 538  PEESLGLGWKHPFHP--------DDMPETT--KRWRHSL----KTGDPYVTEYRCRSKTG 583

Query: 398  QTLHVIVTSNPRGG--------TIWMFENLTVQVDLETKYNTLVKVQGETIDH------- 442
            +   ++  + P                 ++   ++ +    +  +     + H       
Sbjct: 584  EWRWMLGRALPLRNKETGEIEKWFGTCTDVNEGIEAKLAARSTRQQLLSVLAHSQVTIFT 643

Query: 443  --------LSEGVAVFGPDGR------------------IKLSNPAFRSLWKTEENRLSP 476
                    + EG  ++  +G                       NP  +         L P
Sbjct: 644  VNTNLELTMLEGALIWDSNGEDSTPPHSSWFMGQNMYEAFNRLNPQLK--TGEHPKFLRP 701

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
               I     T     +  DG       +     + K    T E   + V+    + +  +
Sbjct: 702  VEDILAGGKTEEVAEHGMDGRWYRTRFLPILGKKTKEGISTNETCIEGVI---GVIMDVS 758

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +       + +  R ++       A ++A+ +K+ F+ ++S+E+R+P+T +IG  +LL+ 
Sbjct: 759  ELKEKAEGLKEESREKKQAMANEAAAKEANRLKSQFLANMSHEIRTPITGVIGMAELLRD 818

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             +   L+++Q++YVE I  S+  LL ++NDILD + V++G + +      L+ ++ +V++
Sbjct: 819  ME---LDAEQTEYVENIQRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVIVTDVRK 875

Query: 657  SIATKMHENNIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             ++      N+  +    G++      + D  R+ QI + +L+N++ F+++G  V     
Sbjct: 876  MLSFAAERKNLDFRSDISGEVENDLVVIGDPGRVRQIITNLLTNSIKFTNQG-YVKFSVQ 934

Query: 714  RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            ++          F V+++G  I E++ K +F  F        R   G GLGL+I ++ + 
Sbjct: 935  KEKETSDSIVVKFIVEDSGIGIEEEVRKKLFQPFSQGDASTARKFGGTGLGLTICKNLLE 994

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L  G++++ S+    T     +P
Sbjct: 995  LMNGNMTLESTLGNGTVATFWVP 1017



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 90/310 (29%), Gaps = 31/310 (10%)

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             G    A   S    +   +     +L N T+ I    ++  + F NR+   L   +  
Sbjct: 342 PMGPPSTAAHASTPSILQKMILMRDALLDNTTMPILAMWKDGSVTFPNRAARALLRHESD 401

Query: 345 FLATNPSNDEL-------LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--- 394
              +    D L        EF R  +     ++     E  FS  +     ++       
Sbjct: 402 LEKSADGFDLLPSWTVYDAEFSRELDVSEYPISVLLRTEKPFSNMRVGMIVENGERRVYD 461

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPD 453
             G+ +    T     G +  F ++T   +  T+     + + + I D + + V     D
Sbjct: 462 ALGEAIRDDSTGEFLAGVV-TFRDVTKMTEEITEIRERDEERFKLICDTMPQLVWTTRAD 520

Query: 454 GRIKLSNPAFRSLWKTEENR-----LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           G     N  + +                  H  ++  T  R+ +     D +        
Sbjct: 521 GYHDFFNTRWYTYTGLTPEESLGLGWKHPFHPDDMPETTKRWRHSLKTGDPYVTEYRC-- 578

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              +S  G    +    L     PL N +T                + E  EA   A   
Sbjct: 579 ---RSKTGEWRWMLGRAL-----PLRNKETGEIEKWFGTCT----DVNEGIEAKLAARST 626

Query: 569 KNSFVQHVSY 578
           +   +  +++
Sbjct: 627 RQQLLSVLAH 636


>gi|327538028|gb|EGF24718.1| two-component hybrid sensor and regulator [Rhodopirellula baltica
           WH47]
          Length = 953

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 122/704 (17%), Positives = 237/704 (33%), Gaps = 77/704 (10%)

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLD-GIYSELAETTLKCKKLSNHISVFKVLFD 200
            L   T     ++I   ++   A LR       +   L E       L        +   
Sbjct: 120 SLEHVTLIHRPLRIAVFINTVRAKLRDRMRQFEVRDLLLEKDRAQTSLRREARRLDMAIQ 179

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTE---TEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           +     W       + W+  ++++                G   +  +E+I      +  
Sbjct: 180 AGGMAAW-EWSKTHVYWS-EAFRRLHGFGKNVQPSESAMFGSIVESEREQIANHWSDAIE 237

Query: 258 LEKNFC--ETVSTLEHGNNKSYKIVRVLNSFGE-----AGIAIDVSKEITVNDQLTHTYE 310
               F     ++  + G      +   +           G+  D+++  T   +L  ++E
Sbjct: 238 QNAPFRSEFRINHPKLGERWLVAVGEPVKGKSGKTLRYTGLQWDITERKTAEMELRQSHE 297

Query: 311 ILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL---------E 357
               L       + + D +  +++ +     ++ I++  L   P  D +          E
Sbjct: 298 TFQRLITDNPQGLYVVDADFRMRYVSAGARNVF-INVNPLIGRPFEDVMRTIWPNEFAEE 356

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            +R      E          +     +S+     W       +  IV  + R G +  F 
Sbjct: 357 AIRVFRHTLETGEPYVAPPLVEQRVDTSDIEAYDWS------IERIVLPDNRQGVVCHFY 410

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           N T +           +   E  D     + V   +           +         +  
Sbjct: 411 NNTQRQLSVDLLRESERYFREIADASPAMLWVTDENH--------MCTFLSKNWYDTTGQ 462

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI---IPLP 534
           T    +    +   +  D        +T+ +  +  L      ++D    +++    P  
Sbjct: 463 TQEEGMGLGWTNATHPDDHARAGEEFLTAANARQPFLSEYRLRMADGSYRWAVDVGRPRF 522

Query: 535 NAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           ++  +         +V D    E++L +       A+  +  F+ ++S+E+R+P+  I+G
Sbjct: 523 DSDGVFVGYTGYVIDVDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILG 582

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             D+LK       N    Q VE I  +   LLN++NDILDL+ +D+G M+L    +  + 
Sbjct: 583 HADILKDHLKDPDN---IQVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDG 639

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           LL EV+  +  +  E ++ +K+  DG +   +  D  RL QI   ++ NA+ F+  G   
Sbjct: 640 LLAEVRSLMDVRASEKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDSGEVK 699

Query: 709 ILKAARDNG----------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           IL      G                        IF + + G  I  +   S+F  FV   
Sbjct: 700 ILVGYDGPGKRPAEIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQASLFEPFVQAD 759

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R   G GLGL+I     +  GG VS+ S+    +     I
Sbjct: 760 STSTRSFGGTGLGLAICRRLAHALGGDVSVESTYGKGSKFTLTI 803


>gi|91790296|ref|YP_551248.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91699521|gb|ABE46350.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 839

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 99/503 (19%), Positives = 187/503 (37%), Gaps = 33/503 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  ++D    +  I  ++   +        +   N +   L+   L  L           
Sbjct: 214 EARLSDSEAMSRAITESMAEGVMTATPQGVIVGANSAARTLFGYTLDDLIGR-------- 265

Query: 358 FLRSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVT---SNPRG 410
             + A  LP   Q ++  + E + S  +              +G    V V+    +  G
Sbjct: 266 --QVATLLPARYQSDFTAFYEALASRPRGFRESGTEVSGVRRDGTEFPVHVSFGDVHVGG 323

Query: 411 GTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             ++  +  ++T    +            +  D +   +A    D R++  N A+   + 
Sbjct: 324 QRLFTAIIRDITESRRISQALRDSEAQLRQLTDTVPALIAYVDKDQRLQFHNKAYEEAFG 383

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
               ++   T +  +         +    +  A     ++ E+ S+ G          EY
Sbjct: 384 LTHEQIHQKTLLEVMGEEFYAGVKD-HVAEALAGYSVRYEREQVSVGGGRR-------EY 435

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +   P       +           AL      L++ D +K+ FV  VS+ELR+PLT+I 
Sbjct: 436 VMNYFPRYGEGKAWDQAIGFF----ALGNDVTELKRIDRMKSEFVSTVSHELRTPLTSIR 491

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   L+     G L  K    V     +   L+ L+NDILD   +++G M+     + L+
Sbjct: 492 GSLGLVWGGVTGELPEKAKALVGIAKNNCERLIRLINDILDSEKIESGKMRFEMQPVELD 551

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            LL +V  +      ++ +++ + +  +      D  RL Q+ + +LSNA+ FS    TV
Sbjct: 552 PLLEQVLAANEGFAAQHQVKLVLRTGRRPVLVNVDSDRLTQVVTNLLSNAIKFSPAEGTV 611

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
            +      G     + + G  IPE+  + +F +F         QR G GLGLSI ++ + 
Sbjct: 612 QVLLRSGAGRVRVEISDKGPGIPEEFRQHIFQKFSQADASDTRQRGGTGLGLSISKAMLE 671

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
              G +  ++     TT    +P
Sbjct: 672 RMEGSIGFTTEQNVGTTFFFELP 694



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 106/331 (32%), Gaps = 36/331 (10%)

Query: 7   TIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEIC 66
           T+ +G+  E     +  +       G+L   ++   + +  R    +++ E     SE  
Sbjct: 164 TLTLGRSKEEARQSAQTVEWLILSGGVLSLAVLAWAIQMIGRFQAQRRLVEARLSDSEAM 223

Query: 67  DQL---SKYHSLLTENNCLTIVWDGKDETP-------EIIGQLHQRIDIPQTDTDLLSFE 116
            +    S    ++T      IV               ++IG+    +   +  +D  +F 
Sbjct: 224 SRAITESMAEGVMTATPQGVIVGANSAARTLFGYTLDDLIGRQVATLLPARYQSDFTAFY 283

Query: 117 NWL--KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
             L  +   + +       +R++G  F +                 G            I
Sbjct: 284 EALASRPRGFRESGTEVSGVRRDGTEFPVHVS-------------FGDVHVGGQRLFTAI 330

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIV 232
             ++ E+    + L +  +  + L D++  L+ + D+   + + N +Y++      E I 
Sbjct: 331 IRDITESRRISQALRDSEAQLRQLTDTVPALIAYVDKDQRLQFHNKAYEEAFGLTHEQIH 390

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--------- 283
            +  +    + F   +K  +  + A      E       G  + Y +             
Sbjct: 391 QKTLLEVMGEEFYAGVKDHVAEALAGYSVRYEREQVSVGGGRREYVMNYFPRYGEGKAWD 450

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            + G   +  DV++   ++   +     + +
Sbjct: 451 QAIGFFALGNDVTELKRIDRMKSEFVSTVSH 481


>gi|225571072|ref|ZP_03780089.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM
           15053]
 gi|225160153|gb|EEG72772.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM
           15053]
          Length = 1117

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 98/530 (18%), Positives = 203/530 (38%), Gaps = 46/530 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             + +Q  +   + + +   IA+   +    L   N   + +       ++    N +  
Sbjct: 313 RRLRNQAEYIGHLYNAIPEGIALISADAPYRLLQLNEEGLNILSYPHDAMSGVLENVQFE 372

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLH---VIVTSNPRGG 411
           E        PE+   K  ++    V  + E H     +   +G  +    +I  +    G
Sbjct: 373 ELFH-----PEES--KMLRQMFADVTGNDEKHTFESQMKKSDGSFIWTAGIIERTLDEEG 425

Query: 412 T---IWMFENLTVQVDLET-----KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
               I  F ++T +   E      +    V + G   +     V+V      +       
Sbjct: 426 IPVLIAAFHDITAEKQKEVEAERVQLQERVTLVGAISNAYPVIVSVNLTRDLLSFIYVKQ 485

Query: 464 RSLWKTEEN--------RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL- 514
             L    E          ++   H  ++     R+  +     L +     F + R+ L 
Sbjct: 486 GLLLHLGEETTYSELFSDITASVHPDHVDEYRRRFAPDRIKEILGSTKQEVFLEMRQKLS 545

Query: 515 QGTLELLSDSVLE----YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            G     S  ++     YS   L    +        +  +  +AL    +  R A+E K+
Sbjct: 546 DGNYHWTSTQIIYVDNPYSEDKLAILISRRVDEQRYEEEQQRQALQTALDNARAANEAKS 605

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+++R+P+  I+G T++ K         +  + ++ IS S + LL L+ND+LD+
Sbjct: 606 KFLSNMSHDIRTPMNAIVGMTEVAKAHLGEQ--DRVRECLDKISRSGSHLLGLINDVLDM 663

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQ 689
           + +++G M L+     L +++ E  + +  +     I I +   G K    + D  RL Q
Sbjct: 664 SRIESGKMSLSAEPFNLAEMVTEAAELVRPQAENKQIHIDIHLYGLKNEKVIGDELRLRQ 723

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           +   ILSNA+ ++ +G +V ++  +          FIF   + G  + ++  + +F  F 
Sbjct: 724 VGVNILSNAVKYTPEGGSVEVEVRQAKSSRKGYQSFIFRCADTGIGMTQEFLEKLFLPFE 783

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   +  G GLG++I ++ I+L  G + + S     +     +P K
Sbjct: 784 RAKDSTDSKVVGTGLGMAITKNIIDLMNGDIQVESEPGAGSVFTVTVPLK 833


>gi|167762177|ref|ZP_02434304.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
 gi|167699820|gb|EDS16399.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
          Length = 852

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 105/497 (21%), Positives = 214/497 (43%), Gaps = 17/497 (3%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + +Q     +I  ++   +  +D +  + F NR+ VE+  +      T P   ++   +
Sbjct: 358 RLVEQRDEFDKIFCSIRDGLVTYDMDLRIHFVNRALVEMLGLPAEMYTTRPYEGQVAGSI 417

Query: 360 RSANKLPEQLNWKTWKENIFSVY-----KSSETHKDT--WHLPNGQTLHVIVTSNPRGGT 412
                  E +     K+ I         + +   ++T   + P    +  I   +   G 
Sbjct: 418 LHIYMNGENILQALLKQVIQDRKPVIIPEKAFMQENTKGIYFPVSGEVVPIFAKDKLTGM 477

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEE 471
             +  N++ +   +  +N  ++         +  +  F  PDG ++  N  + +      
Sbjct: 478 AIVCRNISEEEMQKRFFNMAIEESSIYPWQYNTRLKCFHFPDGLLQRFN-CYDNTDYISR 536

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L    H  +++ TC  + N   G +  + +  SF  +             +  E   +
Sbjct: 537 EELDRIVHPEDLSRTCRHFDNIMLGHEPNSRM--SFRLQNADGGYEWWEFRSTAYEGLTV 594

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +P  + +    ++      E  L    +   +AD +K++F+ ++S+E+R+PL  I+GF+
Sbjct: 595 DIP-YRVLGVCQSIQRYKDTEEELIAARDRALQADRLKSAFLANMSHEIRTPLNAIVGFS 653

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLLK  +  S + +  Q+VE I+ + T+LL L+NDILDL+ +++G M   +S+  L  ++
Sbjct: 654 DLLKDLQAFS-SEEVQQFVETININCTLLLALINDILDLSRIESGTMDFQFSSYNLTFIM 712

Query: 652 NEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            EV  S    M +  + +     +G       D  RL Q+ + +++NA  F+ +GS  + 
Sbjct: 713 QEVYDSQRLSMPQ-GVELCTDFPEGADKYITTDAVRLKQVLNNLINNAKKFTVQGSITLG 771

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
               ++G     V++ G+ I ++  K +F RF       Q  G GLGLSI ++ +    G
Sbjct: 772 YRVDESGYTTVFVEDTGAGISDEDQKHIFERFYKADSFTQ--GAGLGLSICQTIVERIHG 829

Query: 771 HVSISSSDEGVTTINCR 787
            ++++S     T    R
Sbjct: 830 TITVTSKPGRGTRFEVR 846



 Score = 38.4 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKV--------QGETID----HLSEGVAVFGPDGRIKLS 459
            +W++   + + +   + +   ++        Q +  D     + +G+  +  D RI   
Sbjct: 332 VVWLYR--SNRRESRKRIHAQTRLLIQHRLVEQRDEFDKIFCSIRDGLVTYDMDLRIHFV 389

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           N A   +        +   +   +A +    Y   +G ++  A++     +RK +
Sbjct: 390 NRALVEMLGLPAEMYTTRPYEGQVAGSILHIY--MNGENILQALLKQVIQDRKPV 442


>gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 764

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 160/381 (41%), Gaps = 13/381 (3%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +       K     +    +I    +G A F  D ++  +N A+ +++   E      ++
Sbjct: 65  SDLTQANEKIEKAERRLWHSIQAFQDGFAFFDADSKLIGANTAYLNIFDGLEEVTPGISY 124

Query: 480 IRNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +R +                D +  ++T            +++  D  L           
Sbjct: 125 VRILQILTDEGLVNTGEISPDSWRKMMTDRWMSLAPEPIVVQMWDDRYLRLIDQKGHGGD 184

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +++T +V  E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +LL  +
Sbjct: 185 MVSLALDITSTVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLSDT 244

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL+ +Q  Y   I  S   LL ++ND+LD + ++A  M L+     L   ++E+   
Sbjct: 245 ---SLSEEQKLYANTIKNSGEALLVIINDVLDYSKIEADKMVLHEEPFDLERAIHEIVML 301

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAA 713
           +     +  + + V  D  L + FV DR R+ Q+ + +  NA+ F+++G     V   + 
Sbjct: 302 LQPTARDKGLTMLVDYDLFLPTRFVGDRGRIRQVMTNLAGNAVKFTNEGHVTLRVTGISN 361

Query: 714 RDNGD--FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
            D G       +++ G  IP D    VF  F  V +    +  G GLGL+I +  I L  
Sbjct: 362 PDEGTCSVHCLIEDTGIGIPADKVDHVFGEFNQVEDERNRKFEGTGLGLAISKKLIELMD 421

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + + S +   +    RIP 
Sbjct: 422 GEIWVESDEGEGSCFGFRIPL 442



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 53/145 (36%), Gaps = 5/145 (3%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            K      +L H+ +         A FD +  L   N +++ +++  L  +    S   +
Sbjct: 72  EKIEKAERRLWHSIQAFQ---DGFAFFDADSKLIGANTAYLNIFD-GLEEVTPGISYVRI 127

Query: 356 LEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L+ L     +   +++  +W++ +   + S         + + + L +I      G  + 
Sbjct: 128 LQILTDEGLVNTGEISPDSWRKMMTDRWMSLAPEPIVVQMWDDRYLRLIDQKGHGGDMVS 187

Query: 415 MFENLTVQVDLETKYNTLVKVQGET 439
           +  ++T  V  E +  +  +     
Sbjct: 188 LALDITSTVHYEEELRSARERAEAA 212


>gi|83646319|ref|YP_434754.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634362|gb|ABC30329.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 778

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/492 (19%), Positives = 172/492 (34%), Gaps = 22/492 (4%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           +    I+  +   I   D    ++  N +   ++  D            +    R  +  
Sbjct: 20  SRVRAIVEAVADGIITIDNQGVIESFNPAAERIFGYDAEEAVGRNVQMLMPSPFREHHDS 79

Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGT---IWMFENLTV 421
                 +T    I  V +      KD    P    L + VT     G      +  +++ 
Sbjct: 80  YLANYLQTGNAQIIGVGREVLGLRKDGSLFP----LDLAVTEMQVEGRRMFTGVVRDISE 135

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   E             +D + +G+      G I   NPA   ++    + +       
Sbjct: 136 RKASELALQDREARVRAIVDTVVDGIITIDGAGLIDTFNPAAERIFGYAASDV------- 188

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I    S    E    +    I          + G    ++    + S  P+  A + +T
Sbjct: 189 -IGVNVSILMPEPYHSEHDGYIAKFMHTGEAKVIGVGREVTGRRRDGSTFPMELAVSEMT 247

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                      R +T++     + +  K+ F+  VS+ELR+PLT I G   L+     G 
Sbjct: 248 VEGRRMFTGVVRDITDRK----RMERQKDEFIATVSHELRTPLTAIGGALGLVLGKHGGE 303

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L     + ++    +   L  L+NDIL++  +++G +K       L  L+    +     
Sbjct: 304 LPKTVLKMLKVAHRNCDRLTLLINDILEIEKLESGALKFELEDQDLATLIQRSLEDHKEF 363

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  + ++  +         D +R  Q+ S ++SNA+ +S +G  V +  +        
Sbjct: 364 AGKYQVELRFSNSPPRPWVHVDERRFHQVMSNLISNAVKYSPRGGAVDIAVSDVANRVRV 423

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            VK+ G  IPED    VF RF        R   G GLGLSI ++ +  HGG +   S   
Sbjct: 424 HVKDYGKGIPEDFHSRVFERFSQADSSDTREQGGTGLGLSIAKAIVEHHGGEIGFFSKTN 483

Query: 780 GVTTINCRIPSK 791
                   +P +
Sbjct: 484 EGAEFYFDLPIR 495



 Score = 44.2 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 89/278 (32%), Gaps = 47/278 (16%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
           S   S  + + +++   +   D  G I   N + ++     G   ++A+G + ++     
Sbjct: 16  SESDSRVRAIVEAVADGIITIDNQGVIESFNPAAER---IFGYDAEEAVGRNVQMLMPSP 72

Query: 249 KKR----------MISSSALEKNFCETVSTLEHGNNKSYKIV----RVLNSFGEAGIAID 294
            +              ++ +     E +   + G+     +     +V       G+  D
Sbjct: 73  FREHHDSYLANYLQTGNAQIIGVGREVLGLRKDGSLFPLDLAVTEMQVEGRRMFTGVVRD 132

Query: 295 VSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW--------EID 342
           +S+    E+ + D+      I+  +   I   D    +   N +   ++         ++
Sbjct: 133 ISERKASELALQDREARVRAIVDTVVDGIITIDGAGLIDTFNPAAERIFGYAASDVIGVN 192

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           ++ L   P + E   ++       E       +E              T    +G T  +
Sbjct: 193 VSILMPEPYHSEHDGYIAKFMHTGEAKVIGVGRE-------------VTGRRRDGSTFPM 239

Query: 403 IVTSNP---RGGTIWM--FENLTVQVDLETKYNTLVKV 435
            +  +     G  ++     ++T +  +E + +  +  
Sbjct: 240 ELAVSEMTVEGRRMFTGVVRDITDRKRMERQKDEFIAT 277


>gi|171320942|ref|ZP_02909936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171093807|gb|EDT38944.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 594

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/493 (19%), Positives = 186/493 (37%), Gaps = 21/493 (4%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL---PE 367
           +L  L   +   D    + + N +   L    L      P  D L  F R   ++   P 
Sbjct: 1   MLQALPDGVIAADATGRVTYVNAAAAALAGGALEDATGRPVCDVLHMFDRDDRRVQPTPL 60

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           +             +           +    +  V       G  + + +  T +   E 
Sbjct: 61  ERALGGVHARSDRHWLHGADGSSRVPIVEAASPIVDAHGRLDGAVLLLRDAGTERASTE- 119

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
               + ++Q   +D   + +     +GRI   NPA + ++  +E           +A   
Sbjct: 120 ----VSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRW 175

Query: 488 SRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            R    +D +D     +          D  R     +   +         + L   +T  
Sbjct: 176 LRRNPLADSFDTMREAVGPLELLCVRRDGRRFRATVSAGPVRGDARSCVALSLTLRETGA 235

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                  + R+ +   +  +    ++ +K+  +  VS+ELR+PL  I G+ ++L+ ++  
Sbjct: 236 QRRRDLRAQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDD 295

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L   Q Q ++ I  S+  L  +V DILD +++  G ++++   + +  L ++   +  T
Sbjct: 296 AL---QLQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQT 352

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                 I ++            D +RL Q+ + ++SNA+ F+  G  V +  +RD+   +
Sbjct: 353 AASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLSRDDAHAV 412

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  IP      VF+ F          RRG+GLGLSIV     LHGG V + S+ 
Sbjct: 413 LVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGQVRVESAG 472

Query: 779 -EGVTTINCRIPS 790
                T    +P+
Sbjct: 473 RNRGATFTVTLPA 485



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 97/356 (27%), Gaps = 39/356 (10%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEG-IVFQKAIGESRKLFKEEIKKRMISSS 256
           +  +L   V   D  G + + N +              + + +   +F  + ++   +  
Sbjct: 1   MLQALPDGVIAADATGRVTYVNAAAAALAGGALEDATGRPVCDVLHMFDRDDRRVQPTPL 60

Query: 257 ALEKNFCETVSTLEHGNNKSYK---------IVRVLNS--------FGEAGIAIDVSKEI 299
                     S     +              IV   +          G   +  D   E 
Sbjct: 61  ERALGGVHARS-----DRHWLHGADGSSRVPIVEAASPIVDAHGRLDGAVLLLRDAGTER 115

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
              +       ++     AI   D+   +   N +   ++  D A     P   E L  +
Sbjct: 116 ASTEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPL--ETLVAM 173

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R   + P   ++ T +E       +    +      +G+     V++ P  G       L
Sbjct: 174 RWLRRNPLADSFDTMRE-------AVGPLELLCVRRDGRRFRATVSAGPVRGDARSCVAL 226

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           ++ +               ++    +         R   SN     L  T  + L    +
Sbjct: 227 SLTLRETGAQRRRDLRAQRSLQGARDA------RDRADTSNRLKDELLATVSHELRTPLN 280

Query: 480 -IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            I           +++       AI  S     + +   L+  S +  +  I P+P
Sbjct: 281 VIYGWIEVLRNTRDDALQLQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMP 336


>gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 951

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 167/381 (43%), Gaps = 22/381 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  ++    +Y +L+  Q   +D+ +  +            N A    +  +++ L    
Sbjct: 177 IKARITKLKEYESLLNGQTILLDNAASQIWALSNVTSYATVNEAHAEFFGKKKSDLEY-K 235

Query: 479 HIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            + +I    +      + W+LF        + + K+ +G      D +L+    P+ +  
Sbjct: 236 DLYDIFDINTANKLSENNWELFRNDEPAEKEIKIKNWKGE-----DRLLQVKSKPIKDES 290

Query: 538 T-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 + T  ++T+   AE  L +       A+  K+ F+ ++S+E+R+P+  I GF +
Sbjct: 291 GNIKYLVCTAQDITEQRIAEAELYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFGFLE 350

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL++S   +L+ +Q ++V    ++S ILLN++NDILD + ++A  + L   +  L  ++ 
Sbjct: 351 LLESS---NLSLEQREFVREAKSASDILLNIINDILDFSKIEAKKLVLENISFNLRTVIE 407

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           +       K  E  I++  I D  +    + D  RL QI + +LSN + F+  G   + +
Sbjct: 408 DAVSLFVPKTLEKGIQLYTIIDPTIPDEVIGDPSRLKQILNNLLSNGVKFTDAGEIAIKV 467

Query: 711 KAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
               +  +     F V++ G  I     + +F  F        R   G GLGLSI    +
Sbjct: 468 DYFEEENEIALLTFEVRDTGIGISGKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELV 527

Query: 766 NLHGGHVSISSSDEGVTTINC 786
           N+  G +++ S  +  +T   
Sbjct: 528 NMMDGEITVDSVLDKGSTFRF 548


>gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437]
          Length = 595

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 160/395 (40%), Gaps = 30/395 (7%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKL 458
            V V S+   G +   F +L   +      N   K      + ++S+GV      G++ +
Sbjct: 216 QVTVKSDDEIGKLASAFNHLAQHLRDALSQNEEEKGRLQSVLANMSDGVIATDRKGKVIV 275

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGT 517
           SN          + ++  G  I  +    +   +  ++    F  +    ++E       
Sbjct: 276 SNRRAE---GMLDKKIGDGEEINQVLPLANPLVFPVTEMRQTFLELDAQDEEEL------ 326

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                 +V++ +  P+  A      + V      E           K D  +  FV +VS
Sbjct: 327 ------TVIKLTFTPVLRASREAVGLIVVLQDVTEEE---------KLDRQRKEFVANVS 371

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT I  + + L            S+++      +  +  L++D+L L+ +DA  
Sbjct: 372 HELRTPLTTIKSYLEALDEGGAMEEPELASRFMRVTRQEAERMTRLIHDLLQLSRLDAEK 431

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++   + + L  +L +     A +  +  I  ++  +  L    ADR ++ Q+   +LSN
Sbjct: 432 VRFRKAPLPLESVLVDAADRFAFQCRQKEIDFQLSLEEDLPRVYADRDQIDQVLDNLLSN 491

Query: 698 AMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           A+ ++ +G  + L A +  +G    +V + G  IP+   + +F RF        R   G 
Sbjct: 492 AVKYTPEGKKISLTARKCSDGYVEVAVADRGIGIPKKDLERIFERFYRVDKARSRSLGGT 551

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI    +  HGG + + S+    TT+   +P
Sbjct: 552 GLGLSIAREIVRAHGGSIQLESNYGKGTTVRFTLP 586


>gi|316934884|ref|YP_004109866.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315602598|gb|ADU45133.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 769

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 95/413 (23%), Positives = 177/413 (42%), Gaps = 34/413 (8%)

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               I +  ++T Q  L  +         + I+ + E   ++  + R+ L N  F+ L K
Sbjct: 349 DKHLIGIAVDITEQKSLAERSVEADLRLRDAIETIPEAFVLWDAENRLVLCNSHFQRLHK 408

Query: 469 TEENRLSPGTHIRNIAATCS------RYYNESDGWDLFAAIITSFDD-------ERKSLQ 515
             ++ +SPGT    I           R  +               DD       ER++  
Sbjct: 409 LPDSAVSPGTSYETILEVGRMPQLRTRLCDNGGVAPGARTFEAQLDDGKWLHISERRTKD 468

Query: 516 GTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           G    +                +D  L  ++  L   QT L       +  A R   ++ 
Sbjct: 469 GGYVAVGTDITRIKAHEQKLVDNDLRLRATVADLKITQTKLEKQAHQLADLA-RKYGDEK 527

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618
               +A++ K+ F+ ++S+ELR+PL  IIGF++++ +   G+L + K  +Y   I  S  
Sbjct: 528 RRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGH 587

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++NDILD++ ++AG M+L    + L+  + E  + +A +    ++ ++     ++ 
Sbjct: 588 YLLEVINDILDMSKIEAGRMRLEMEPLDLSKTIGESLKVVAGRAEHKHLDLRAEVGDQIP 647

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             VADR+ + QI   +LSNA+ F+     V +++       +  + + G  IP    + +
Sbjct: 648 -IVADRRAIKQILINLLSNAVKFTPDAGRVTVRSRIAGDSIVLMIADTGIGIPPQSLRRL 706

Query: 739 FNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              F            G GLGL+I +S +NLHGG + + S+    T +   +P
Sbjct: 707 GQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGEGTVVMVSLP 759


>gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
            PV-1]
 gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
            PV-1]
          Length = 1427

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/477 (21%), Positives = 197/477 (41%), Gaps = 42/477 (8%)

Query: 343  LAFLATNPSNDELLEFLRSANK---LPE---QLNWKTWKENIFSVYKSSETHKDTWHLP- 395
             A L  N    + L++ R       +PE   +   + + + +  +        +++H   
Sbjct: 538  AAILRVNDWACDYLKYSREELLNMTIPEIAPEFPMELFPQTMEEIRGQGWARLESFHRAR 597

Query: 396  NGQTL-------HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +G  +       +V          I    +++ +  +E +   +  V  ET      GV 
Sbjct: 598  DGSVIPLEFIVDYVKAKDAKDDIIIAFSLDISERKQIEDELRMMSLVAAET----DNGVV 653

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            V G D +IK  NP F  +   + + +      R           E D        I   +
Sbjct: 654  VTGLDQKIKWVNPGFTDITGYDFDEVIG----RKPGDFLHGPKTEQDAVSCLGTAIRKQE 709

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALR 563
                 +    +     +L   I+P+ +      + +    NVT+  RA++ + E  EA  
Sbjct: 710  RVATDITNYGKNGEPYILHIEIMPIRDESGEVVEFIALESNVTEQRRADKEIKEAKEAAE 769

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             A+  K+SF+  +S+E+R+PL  ++G  DLL+ ++   L S Q   V     SS  L+ +
Sbjct: 770  LANRAKSSFLAAMSHEIRTPLNGVVGTIDLLEHTR---LESNQRDMVRTARDSSLTLMGI 826

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            ++D+LD + ++AG ++L+ + + L  ++    +S+     +NNI + V  +  +   + D
Sbjct: 827  IDDVLDFSKIEAGKLELDDAPVSLQRVVEGCVESMQPLAAKNNIELLVFCEPAIPEVMGD 886

Query: 684  RQRLLQIFSKILSNAMDFSS-----KGSTVILKA-----ARDNGDFIFSVKNNGSSIPED 733
              RL QI   +  NA+ FS+     +   V + A        +     SVK+NG  +  D
Sbjct: 887  LVRLRQILLNLTGNAIKFSAGLKSGRQGRVEVSAALESVEEQDVKIRLSVKDNGIGMSAD 946

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              + +F  FV       RR  G GLGL+I    + + GGH+ + S  +     +  +
Sbjct: 947  AQEKLFRPFVQAESSTTRRFGGTGLGLAISRRLVEMMGGHIEVESRLDQGACFSVAL 1003



 Score = 41.1 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 111/360 (30%), Gaps = 35/360 (9%)

Query: 94  EIIGQ-LHQRIDIPQTDTDLLSFENWLKFHHYIKLS--KATEKLRKEGQSFDLVAETQND 150
           E++G  +   +  P           ++       +   +  E +R +G  F   AE    
Sbjct: 425 ELLGNNVSMLMPEPHRGVHNDYISRFMDSGDARVIGIGREVEAIRSDGSLF--PAELTVS 482

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
                 G          +  L     + AE  L+ ++ SN I+  + L        W   
Sbjct: 483 RFELDSGTHFAGT----LRDLT--QRKKAEAELEAERKSNEITK-RALERGNIGEFWVNV 535

Query: 211 QAGDILWANI------SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE 264
               IL  N        Y +       + + A     +LF + +++      A  ++F  
Sbjct: 536 HTAAILRVNDWACDYLKYSREELLNMTIPEIAPEFPMELFPQTMEEIRGQGWARLESFHR 595

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIA--IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                          V+  ++  +  IA  +D+S+   + D+L     +       + + 
Sbjct: 596 ARDGSVIPLEFIVDYVKAKDAKDDIIIAFSLDISERKQIEDELRMMSLVAAETDNGVVVT 655

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
             ++ +++ N  F ++   D   +          +FL       + ++            
Sbjct: 656 GLDQKIKWVNPGFTDITGYDFDEVIGRKP----GDFLHGPKTEQDAVSCLGTAIRKQERV 711

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMF----ENLTVQVDLETKYNTLVKV 435
            +  T+    +  NG+   + +   P     G +  F     N+T Q   + +     + 
Sbjct: 712 ATDITN----YGKNGEPYILHIEIMPIRDESGEVVEFIALESNVTEQRRADKEIKEAKEA 767


>gi|171911480|ref|ZP_02926950.1| PAS/PAC sensor hybrid histidine kinase [Verrucomicrobium spinosum DSM
            4136]
          Length = 1778

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 128/793 (16%), Positives = 276/793 (34%), Gaps = 86/793 (10%)

Query: 54   KVNETYSFLSEICDQLSKYHSLLTENN---------CLTIVWDGKDET------PEIIGQ 98
             V    +  +     LS+  +++  ++            + W+   E        EI+G+
Sbjct: 863  SVARDVTERTNAEHALSRLAAIVESSDDAIISNDLAGRVLSWNKGAERLFGYQAREIVGR 922

Query: 99   LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGR 158
                  IP  D      +  L+        +  E +R+      +            +G 
Sbjct: 923  -PIMTLIP--DDRFEEEQVILENLRGGSRLEHYETVRRRKDGTHVDVSLTVSPIRNEQGV 979

Query: 159  VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
            + G+    R         ++ +      +L     +++ + +S++F +W  D AG   +A
Sbjct: 980  IVGASKIAR---------DITQKKQDEAELRRSERLYRAIGESMNFGIWICDAAGLNQYA 1030

Query: 219  NISYKKNTETEGIVFQKAIGESRKLFKEEI----KKRMISSSALEKNFCETVSTLEHGNN 274
            + S  K        F    G  + L  E+     +      +  +  F E+       + 
Sbjct: 1031 SDSLLKLVGMTQAEFA-GEGWMKALHPEDAEAVRQAWRRCVTGPDTTFWESEQRFRGMDG 1089

Query: 275  KSYKI----VRVLNSFG----EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIF 322
              + +    V V +  G      GI +D+S+    E  +     H   +       IA  
Sbjct: 1090 AWHPVLARGVPVRDESGRLQQWVGINLDISELKKTEEALRRSEAHLTAVFQQAGSGIAQT 1149

Query: 323  DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            D        N ++ E+            + +ELL         P+            +  
Sbjct: 1150 DLEGRYVMVNDAYCEITG---------RTREELLGQKVHEITHPDDRVHYGDAHEALAGD 1200

Query: 383  KSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
              +   ++ +   +G  + V  +            GT+ + +++T     E       + 
Sbjct: 1201 GPAFIMENRFVRADGVEVWVRSSVVGLRDSQERLSGTLSITQDITESRHAEDALMASEQQ 1260

Query: 436  QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                 DH    +A        K +N  + + ++ E  +L  G  +R +    +       
Sbjct: 1261 LRLVTDHAPVYLAQVDRHQCYKFANRPYAAQYELEVPQL-VGRPMREVMGEAAYEAARGC 1319

Query: 496  GWDLFAAIITSFDDERKSLQGTLELLSDSVL------EYSIIPLPNAQTMLTFVNVTDSV 549
                 A  +  F+ +      + + L D  +      E+          +L   +VT+  
Sbjct: 1320 VEAALAGELVEFEMQ-MHFPSSHDELGDRWIHSVFMPEWQSDQAEVTGFVLVQTDVTNRK 1378

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            ++E  L +  +   +A   K+ F+  +S+ELR+PL+ +      L  +  G+ N +  + 
Sbjct: 1379 QSELDLEQARDQALEAVRAKDDFLARLSHELRTPLSPV------LLLASEGASNPEVPES 1432

Query: 610  V----EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            V    + I  +  +   L++D+LDL  +  G + ++   + ++ +L +   ++       
Sbjct: 1433 VQADFDTIRKNVDLEARLIDDLLDLTRITRGKLAMDLQGVDVHVVLRDALDTVRQDAEAK 1492

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSV 723
            ++ + +           D+ RL Q+F  +L NA+ F+ +   +++  A   + G  +  V
Sbjct: 1493 SLVLTLALHATSRLVWGDKVRLQQVFWNLLKNAVKFTPEYGAIVVSTALGPEPGTVMIRV 1552

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAH-----RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +NG  +  +  + VF  F    H       +  G+GLGL+I    + LH G +   S  
Sbjct: 1553 SDNGMGMTLEEQQRVFEAFAQGEHAMQGGSHRYGGLGLGLTITRMLVELHEGRIQAISEG 1612

Query: 779  -EGVTTINCRIPS 790
                TT    +P 
Sbjct: 1613 RGHGTTFVITLPL 1625



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 79/588 (13%), Positives = 185/588 (31%), Gaps = 45/588 (7%)

Query: 27  FGTIAGMLLTTIIPIIL--LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTI 84
              +AG +   +       + R+R     +++      S    + S+  + L        
Sbjct: 321 LELVAGQISAGLATAGAFEMERERAESLLELDRVRRE-SAAQLRESEERTRLAVEAGKVG 379

Query: 85  VWDGKDETPEI-IGQLHQRI---DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
           VWD       +   +L  RI   +    D     F   +     ++++    +       
Sbjct: 380 VWDWNLAAGTVGWSELTHRIFGVEPGGFDGTFDGFLGLVHPVDRVRVAAEVNRAHAGDGR 439

Query: 141 FDLVAE----TQNDCAIKIEGRVS----GSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
           F+        +     I+  G+ +    G    +    LD    +  E  L+  +L    
Sbjct: 440 FNCELRALPPSGEVRWIECHGQTAFSPQGGPERMHGTVLDITERKRGEELLREARLRLET 499

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
           ++F     + ++ + +     D   A + +    E E    ++ I    K     +++ M
Sbjct: 500 TLFAAEIGTWNWDIRNDQVTADENMARLFFVDVREQESPPMERFIQMIHKDDVARVRRAM 559

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVR--------VLNSFGEAGIAIDVS----KEIT 300
            ++        E    +     +   +                  G+ ID++     E  
Sbjct: 560 DAALVDPAGNFEQDYRVVSPQGQVRWVTARGRVQRDSTGKPERFPGVIIDITGRKQAEED 619

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +        ++L  L +A    +++ +L F+N +  ELW      L           +  
Sbjct: 620 LEGSEQRHRKLLSLLPMACYTLNEDGWLTFYNDAARELWGRAPE-LGRVRWCGSYRMWSL 678

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTI 413
               +P + +            + +E   +    P+G    V ++S+P         G I
Sbjct: 679 DGQFIPHEQSPMVAALQEARPARGAEVVVE---RPDGTQRWVALSSDPLHDARGKCRGLI 735

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  +++ +   +             I   ++ + V  P G ++ ++     + + +E  
Sbjct: 736 NVALDVSDERRTQKALAQSEAFLQSVISSTADCIMVMDPLGGLQWTSANGIRMLEMDEAS 795

Query: 474 LSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           L  G    ++     S+   ++      A  +  F     +  GT +     V       
Sbjct: 796 LPTGRSWLDMWQDDTSQRVAQAALRQANAGQVGRFRGFCPTFAGTPKWWDVMVTPIPARD 855

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
              A+ +    +VT+   AE AL+     +  +D+        +S +L
Sbjct: 856 GGAARFLSVARDVTERTNAEHALSRLAAIVESSDD------AIISNDL 897



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/418 (10%), Positives = 134/418 (32%), Gaps = 28/418 (6%)

Query: 164  AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
            A  +   L  +  ++++     K L+   +  + +  S    +   D  G + W + +  
Sbjct: 727  ARGKCRGLINVALDVSDERRTQKALAQSEAFLQSVISSTADCIMVMDPLGGLQWTSANGI 786

Query: 224  KNTETEGIVFQKAIGE----SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
            +  E +                   +   +  +  ++A +            G  K + +
Sbjct: 787  RMLEMDEASLPTGRSWLDMWQDDTSQRVAQAALRQANAGQVGRFRGFCPTFAGTPKWWDV 846

Query: 280  VRVLNSFGEAG------IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
            +       + G      +A DV++       L+    I+ +   AI   D    +   N+
Sbjct: 847  MVTPIPARDGGAARFLSVARDVTERTNAEHALSRLAAIVESSDDAIISNDLAGRVLSWNK 906

Query: 334  SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
                L+      +   P    ++  +       EQ+  +  +          E ++    
Sbjct: 907  GAERLFGYQAREIVGRP----IMTLIPDDRFEEEQVILENLRGG-----SRLEHYETVRR 957

Query: 394  LPNGQTLHVIVTSNP----RGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
              +G  + V +T +P    +G  +    +  ++T +   E +     ++     + ++ G
Sbjct: 958  RKDGTHVDVSLTVSPIRNEQGVIVGASKIARDITQKKQDEAELRRSERLYRAIGESMNFG 1017

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            + +    G  + ++ +   L    +   +    ++ +    +    ++    +     T 
Sbjct: 1018 IWICDAAGLNQYASDSLLKLVGMTQAEFAGEGWMKALHPEDAEAVRQAWRRCVTGPDTTF 1077

Query: 507  FDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            ++ E+  + + G    +    +          Q +   +++++  + E AL      L
Sbjct: 1078 WESEQRFRGMDGAWHPVLARGVPVRDESGRLQQWVGINLDISELKKTEEALRRSEAHL 1135


>gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 962

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 164/374 (43%), Gaps = 14/374 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++++  +     K+  + +D + EG+ +    G     N  F  L   +    S G  +
Sbjct: 448 DKLEMYEETERQRKMTQDMLDSVQEGIQLIDLSGETLQVNWNFCELLCYDHQLASQGFDL 507

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
               +      +E D   L   + +   DE     G++      V E +   +   Q   
Sbjct: 508 EQFLSHLQSRTSEPD--RLIQYVRSVVLDEGAIPSGSI------VFEMTGPQIRYIQLYA 559

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +       +   +        + D++K+ FV  VS+ELR+PL +++GF +LL T KL 
Sbjct: 560 EPLYRNQEKWSTLLVYRDFTKEYEIDQMKSEFVSTVSHELRTPLASVLGFAELLLTKKLK 619

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q +Y+  I   +T L  L+ND LDL  +++G        + ++ ++ ++ +    
Sbjct: 620 P--ERQQRYIATIYQEATRLTALINDFLDLQRMESGRQTYELENVAIDQVIRDIFELHRV 677

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +   +   + + ++  +     D+ +L Q+F  ++SNA+ +S  G  V +   +D    +
Sbjct: 678 QSPLHRFELDLQTEKTV--VSGDQAKLHQVFLNLISNAVKYSPHGGHVRVGCRQDGNRLL 735

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  IP +    +F +F    +  +R   G GLGL+IV+  +++H G VS+ S  
Sbjct: 736 VEVQDEGLGIPSEAIPHLFTKFYRVDNSDRREIGGTGLGLAIVQEIVHMHHGEVSVISES 795

Query: 779 EGVTTINCRIPSKE 792
              +T    +P  E
Sbjct: 796 GKGSTFTVTLPLAE 809


>gi|117925404|ref|YP_866021.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609160|gb|ABK44615.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 674

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 149/376 (39%), Gaps = 13/376 (3%)

Query: 422 QVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  L+T ++ + +   E    +D  S+ +      G +   N     ++   +  +    
Sbjct: 145 EHALQTAHDEIAETLRERTVALDRASDAIISADQQGHVIFWNHGAERIFGYPKQTILHTP 204

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +R I       +  S   ++ A+      D      G         +E S+     A+ 
Sbjct: 205 LLRLIPDQLHETF-LSHFSEVIASGEIKNSDSIYEFSGLRANGEVFPIEVSVSYWQGAER 263

Query: 539 ML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                   +++   + E  L    +    A+  K++F+  +S+E+R+PL  I+G   LL+
Sbjct: 264 HFFSAVVRDISQRKQLETQLRHAQQISESANRAKSTFLATMSHEIRTPLNTILGMGQLLE 323

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    L   Q   V  +  S   LL L+NDILDL+ ++ G + L ++   L+ LL EV+
Sbjct: 324 ET---DLTEMQHWCVNILGNSGRALLTLINDILDLSKIEEGHLSLEHTPFDLHQLLQEVE 380

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +          I ++      L    + D  RL Q+   +L NA+ F+ +G   +     
Sbjct: 381 ELFTFSALAKGITLRGHFSESLPQWVMGDPTRLRQVLLNLLGNAIKFTKQGFVELSAQTM 440

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
              +  FSV ++G  I ++  + +F  F        R   G GLGL+I    + L  G +
Sbjct: 441 AEDEICFSVFDSGPGIAKERQQEIFLPFTQADSSTTRKYGGSGLGLTISRRLVKLMHGQI 500

Query: 773 SISSSDEGVTTINCRI 788
            + S     +     +
Sbjct: 501 QLESRLGKGSRFYFSL 516



 Score = 43.0 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 22/155 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    + + L      L   + AI   DQ  ++ F N     ++      +   P    +
Sbjct: 150 TAHDEIAETLRERTVALDRASDAIISADQQGHVIFWNHGAERIFGYPKQTILHTPLLRLI 209

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSET------HKDTWHLPNGQTLHVIVT-SNP 408
            + L             T+  +   V  S E       ++ +    NG+   + V+ S  
Sbjct: 210 PDQLHE-----------TFLSHFSEVIASGEIKNSDSIYEFSGLRANGEVFPIEVSVSYW 258

Query: 409 RGGTIWMF----ENLTVQVDLETKYNTLVKVQGET 439
           +G     F     +++ +  LET+     ++    
Sbjct: 259 QGAERHFFSAVVRDISQRKQLETQLRHAQQISESA 293


>gi|119898741|ref|YP_933954.1| putative two-component system sensor protein [Azoarcus sp. BH72]
 gi|119671154|emb|CAL95067.1| putative two-component system sensor protein [Azoarcus sp. BH72]
          Length = 916

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 113/655 (17%), Positives = 229/655 (34%), Gaps = 62/655 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILW--------------- 217
           I +++     + + L       +    + +   W  +   G++ W               
Sbjct: 126 IRTDITAVKQQQQALLISEERLRRGQAAANIGTWDWNMVTGELFWSERIAPLFGLPEDLR 185

Query: 218 --ANISYKKNTETEGIVF--QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
                ++      +              +    E++ R++      +   E  +      
Sbjct: 186 ETRYAAFLSAIHPDDREHVLAAVRATVDEDRPYEVEHRVVWPDGTVRWLLERGAVTRDAE 245

Query: 274 NKSYKIVRVLNSFGEAGIAID--VSKEITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQF 330
             +  ++ V+    E  IA       E  + +        +      +  +D  +  + +
Sbjct: 246 GNAVHMLGVVQDIHERKIAELSLAESEQRLRETQARFSFAVEGAGDGVWDWDVASGRMMY 305

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
               +  +       +   PS    +  +  A+    Q     +       + +    + 
Sbjct: 306 SGH-YEAMLGYAPGEI--EPSVKAWMRSVHPADIASAQARMMDYLGGRLPTFST----EY 358

Query: 391 TWHLPNGQTLHVIVTSN-----PRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             H  +G    V+         P G     I +  +++     E +    + +    ID 
Sbjct: 359 RLHCKDGGYKWVLCRGTVVEREPDGRARRLIGIHSDISESKAAEER----LALFRRVIDA 414

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
            S+ V +    GR+   N A   L   E++ ++            +R     DG  L A 
Sbjct: 415 SSQCVGIADGTGRLLYQNRAHARLLGYEDDEIAGMP--------VARLLPLDDGGVLAAQ 466

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPL--------PNAQTMLTFVNVTDSVRAERA 554
           I     D R  +        D  +  S   +                F + T+ +     
Sbjct: 467 IFGMVQDARGLVGQLPMRRKDGTVFTSFSNIGFVKDARGQTQYIFNIFTDFTEELARRNE 526

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +   +A++ K+ F+  +S+ELR+P+  ++GF  LL+     +L + Q   V  I 
Sbjct: 527 LAEAKDTAERANQAKSDFLSSMSHELRTPMNAVLGFAQLLECD--DTLTADQRDNVAEIL 584

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L+N++LDLA ++AG + L+   + L + +++ +Q I        I +++   
Sbjct: 585 KAGGHLLTLINEVLDLARIEAGRIDLSLEPVALREAVDDCRQLIQPLAAARAIVLEMSLP 644

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +L    ADR RL Q+   +LSNA+ ++ +G  V L A    G    SV + G+ I  + 
Sbjct: 645 DEL-VVRADRTRLKQVLLNLLSNAVKYNREGGRVSLAAQCREGRLRLSVSDTGAGIAPER 703

Query: 735 CKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             ++F  F    A      G G+GL+I    + L GG +   S     +T    +
Sbjct: 704 MAALFEPFERLGAEASAIEGTGIGLTITRRLMELMGGEIGAESRVGEGSTFWIEL 758



 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 17/148 (11%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             +      +D     V+V    GRI  +NP F  +     + L    H           
Sbjct: 17  RSLARLAYVLDQ-HAIVSVTDAAGRIIDANPLFCEISGYSRDELLGRNH--------RML 67

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPN-----AQTMLTF 542
            +   G + +A I  +    R           D     +  +I+P P       Q +   
Sbjct: 68  KSTRHGAEFYAGIWATIAGGRTWHGEICNRRKDGSEYWVRSTIVPFPGPDGRPEQYISIR 127

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKN 570
            ++T   + ++AL    E LR+     N
Sbjct: 128 TDITAVKQQQQALLISEERLRRGQAAAN 155


>gi|189423637|ref|YP_001950814.1| chemotaxis protein CheR [Geobacter lovleyi SZ]
 gi|189419896|gb|ACD94294.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Geobacter
            lovleyi SZ]
          Length = 1193

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 96/536 (17%), Positives = 201/536 (37%), Gaps = 61/536 (11%)

Query: 296  SKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            S+    N++L         +L +  V     DQ   ++  + +     ++    L     
Sbjct: 523  SELEHRNEELQRLNRDHDNLLASTEVGTVFLDQQLRIRKFSSAISAFLKLLPQDLG---- 578

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-------DTWHLPNGQTLHVIV 404
                ++ +      P++     ++E +  V +S   H+       D W L   + L    
Sbjct: 579  --RPIDHIAYELGSPQE-----FRERLQQVLESGLRHEQEIHTGADQWVLQ--RILPFRT 629

Query: 405  TSNPRGGTIWMFENLTVQ-----------VDLETK-------YNTLVKVQGETIDHLSEG 446
             +    G +  F +++             + LE K        +         I++  +G
Sbjct: 630  DNGSIDGVVLTFTDISAVKQAQAAVAEMNIQLEQKVIERTCELSASEARIRAFIENSGQG 689

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY----NESDGWDLFAA 502
                GPD      NPA  S+       +   + +  + A     +       DG +    
Sbjct: 690  FWQLGPDRLTIDLNPALCSMLGYRREEMLGRSPLEFVDAENRSIFLYQMGRIDGTEHRNY 749

Query: 503  IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             IT    +   +       +   +E  +             ++++  R E+ +    EA 
Sbjct: 750  EITLLHKDGHPVPVMFSATTHRTVEGKV-----DSAFAFITDLSEQKRVEQEIRAAKEAA 804

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              A+  K  F+ ++S+E+R+PL  I+G + LL  +    L  +Q  Y+ ++  S+  LL+
Sbjct: 805  ESANRAKTQFLANISHEVRTPLNGIMGMSHLLHMT---PLADEQQDYLRHLDDSAQSLLS 861

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFV 681
            ++ND+LDL  +++G      +   L+ L  ++ +          + +++  +DG  G   
Sbjct: 862  VINDLLDLTRIESGGFGTEQADFQLDQLARDILRIHQPVAQRKGVLLQLELADGMPGLLR 921

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                RL Q+   ++ NA+ F+ +G  V+    +     +    F+V ++G  +  +  K 
Sbjct: 922  GVPLRLKQVLHNLVGNAVKFTDQGRVVLSISPIIVPGQSLRVRFAVCDSGIGMEPETIKR 981

Query: 738  VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F+ F         +  G GLGL+I      L GG + + S+    +     +P K
Sbjct: 982  IFDPFSQADESISRRYGGTGLGLTICRRLTELMGGTIEVESTPGQGSCFTVILPMK 1037


>gi|260432099|ref|ZP_05786070.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415927|gb|EEX09186.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
          Length = 738

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 91/382 (23%), Positives = 174/382 (45%), Gaps = 18/382 (4%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +LT+    + K     +    +I  + +G A F  +  +  +N A+ S+++  +  ++PG
Sbjct: 68  DLTI---AQAKIEVAERRLWHSIQTIQDGFAFFDGNDHLISANTAYLSVFEGLDE-VAPG 123

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ---GTLELLSDSVLEYSIIPLP 534
              + I    +       G +   A           +      ++L +   ++       
Sbjct: 124 ISYQRILDLLTNEGIIDIGDEPAEAWKARMLRRWARMNPPPEVIQLWNGQYIKLIDQRGQ 183

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +   +N+T SV+ E  L    +    A+  K++F+ ++S+E+R+P+  I+G TDLL
Sbjct: 184 GGDVVSLALNITASVQHEAQLQAARKKAEAANRAKSAFLANMSHEIRTPMNGIVGMTDLL 243

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   LN +Q  YV+ I AS   LL ++ND+LD + ++A  + L+     L   +NEV
Sbjct: 244 SETQ---LNDEQRLYVDTIRASGEALLVIINDVLDYSKIEADKLVLHPEEFDLERCINEV 300

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA- 712
              +     +  + + V  D  L + FV D  R+ QI + ++ NA+ F+  G  +I    
Sbjct: 301 VMLLQPSARDKGLTLLVDYDLFLPTLFVGDPGRVRQILTNLVGNAVKFTLHGHVLIRVTG 360

Query: 713 ----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
               +R++ D   ++++ G  IP D    +F  F     +  R+  G GLGLSI +  I+
Sbjct: 361 VPDESRNDCDIHIAIEDTGIGIPPDKIDHIFGEFNQIDDKKTRQFDGTGLGLSITKRLIS 420

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L GG + + S     +    R+
Sbjct: 421 LMGGTLWVDSDPGKGSCFGFRL 442



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 77/213 (36%), Gaps = 5/213 (2%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
            E +  ++    + +      +  + S++     +  T++          + VR  N   
Sbjct: 6   AEKLAQERRARLAAERMLALKQAELSSANRKLGEYAMTLTRRIGETQAEVETVRGENEKV 65

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           ++ + I  +K      +L H+ + +       A FD N +L   N +++ ++E  L  +A
Sbjct: 66  KSDLTIAQAKIEVAERRLWHSIQTIQ---DGFAFFDGNDHLISANTAYLSVFE-GLDEVA 121

Query: 348 TNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              S   +L+ L +   +       + WK  +   +       +   L NGQ + +I   
Sbjct: 122 PGISYQRILDLLTNEGIIDIGDEPAEAWKARMLRRWARMNPPPEVIQLWNGQYIKLIDQR 181

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
              G  + +  N+T  V  E +     K     
Sbjct: 182 GQGGDVVSLALNITASVQHEAQLQAARKKAEAA 214


>gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 928

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 99/489 (20%), Positives = 202/489 (41%), Gaps = 40/489 (8%)

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           FD+ +     +    E++ I     A +P     L  +          +       + + 
Sbjct: 52  FDRQQ---VWDARSREIFGIAED--APDPDFRNWLRSIH-------PDDRGRVVAELDAA 99

Query: 382 YKSSETHKDTWHL---PNGQTLHVIVTSNPR---GGTIW----MFENLTVQVDLETKYNT 431
            ++ E H    +    P G+  HV          GG       M  ++T +V+     + 
Sbjct: 100 RRAEEPHCRWDYRVVRPGGEVRHVRAFGTLGRTHGGEFLYVSGMHFDVTDEVEALALRDD 159

Query: 432 LVKVQGETIDHLSEGVAVFG--PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           L +     ++     + V       RI   +P+ R++   +   +     I         
Sbjct: 160 LDRRLAFLLEANPAILYVLDVSAATRIVYLSPSIRAVLGYDPEVV-----IATPGWWPDT 214

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTFV--N 544
            + +      +A   T   D R ++   +     S L   +    P P    ++     +
Sbjct: 215 LHPDDRARAFYALEHTVRQDGRATVVYRMRKADGSYLWLQDQLSQPHPERPHVIIGCLSD 274

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + D ++ E  L +  E  + A  +K+ F+ ++S+E+R+PL  ++G  DLL  +    L+ 
Sbjct: 275 IADRMQIEDELVQAREDAQAASRVKSQFLANMSHEIRTPLNGVLGMADLLLDT---GLSP 331

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q + ++ + +S+  L  L+ D+LD++ ++AG +++   +  L +L+ E  ++IA +  E
Sbjct: 332 EQRELLDALQSSANALRGLIEDVLDISKIEAGKLEIEAVSFPLLELVYEAARAIAVRAQE 391

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             + + V ++  L +  + D  R  QI   +LSNA+ F+  G  V+    R +     SV
Sbjct: 392 QGLELIVDAEPALPARVLGDPVRFRQIVLNLLSNAVKFTPAGEVVVRVRQRADEHIELSV 451

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  +PE+  +++F  F  +     RR  G GLGL+I        GG +     D+G 
Sbjct: 452 RDTGVGVPEERREAIFESFTQSDGSTTRRFGGTGLGLTICRELAERMGGKLWYEPGDQGG 511

Query: 782 TTINCRIPS 790
           +  +  +P 
Sbjct: 512 SVFSVSLPL 520


>gi|326202265|ref|ZP_08192134.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987383|gb|EGD48210.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 607

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 161/385 (41%), Gaps = 27/385 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  ++ ++       +  K + ETI +++++GV  F   G    +NPA   L  
Sbjct: 246 GNLTRTFNYMSSELKKTLSEISSEKNKVETILNYMADGVIAFDLKGMAIHANPAATKLLG 305

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                        ++  +  + +    G D+    I  F  E   ++ +  +L+D  ++ 
Sbjct: 306 ------------SDVVNSPFKEFAVKVGLDVRIEDIVYF--EESPVRESDTILNDMYVKV 351

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                 +       + V      E+          K D ++  FV +VS+ELR+P+T+I 
Sbjct: 352 YFAVFTDTNKKPEGIIVVLHDDTEQQ---------KLDSMRREFVANVSHELRTPITSIK 402

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            +T+ L    +        +++  I + +  +  LV D+L L+ +D   M      + L+
Sbjct: 403 SYTETLLEGAMED-QETSKRFLCVIDSEADRMTRLVKDLLQLSRLDNQQMNWKMECVSLD 461

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++  + + +  +    + ++     G + +  AD+ R+ Q+   ++SN++ ++S+   +
Sbjct: 462 TIVKTIVERLQIEAQRKHQKLDSYVIGDIPAISADKDRMEQVIVNLISNSIKYTSEYGEI 521

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            +       D    V + G  IP +    VF RF        R   G GLGLSI +  + 
Sbjct: 522 TVYVGIIYNDIYVKVTDTGIGIPSESLPRVFERFYRVDKARSRDMGGTGLGLSIAKEIVQ 581

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG ++ISS     T +  ++P +
Sbjct: 582 AHGGTINISSEIGKGTEVTVKLPRE 606


>gi|229542344|ref|ZP_04431404.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229326764|gb|EEN92439.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 606

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 156/412 (37%), Gaps = 28/412 (6%)

Query: 385 SETHKDTWHLPNGQTLH-VIVTSNPR-GGTIWMFENLTVQV-DLETKYNTLVKVQGETID 441
           SE  K    +  G     V V  N   G   + F ++T ++ + +       +     + 
Sbjct: 210 SEIRKQAMAMARGNFARKVKVIGNDEIGQLAYSFNHMTKKLQEAQASTEGERRKLDSILT 269

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      GRI L N     +       +     I  +       +++        
Sbjct: 270 HMTDGVIATDRRGRIILINEPAAEMLDVSRETVLSQPLISVLKIENEHKFDDLLTEQ--D 327

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           ++I  F  E +            +L  +   + N    ++ +        E+        
Sbjct: 328 SVILDFSTEEEPY----------ILRANFSVIQNEAGFVSGLITVLHDVTEQE------- 370

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K D  +  FV +VS+ELR+PLT +  + + L             Q++      +  ++
Sbjct: 371 --KIDMERREFVANVSHELRTPLTTMRSYLEALTDGAWKD-EKIAPQFLGVTQNETERMI 427

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+L L+ +D+    LN   +   +  + V         + N+  K           
Sbjct: 428 RLVNDLLKLSKMDSKDEHLNKEWVNFVEFFHHVIDRFE-MAKQQNVTFKRKLPNTEIFVE 486

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  ++ Q+   I+SNA+ +S +G  +  K    N     S+ + G  IP++  K +F R
Sbjct: 487 IDEDKMTQVLYNIISNALKYSPEGGQITFKLRELNEKIEVSISDQGVGIPKENVKKIFER 546

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F        R   G GLGL+I +  + +HGG +  SS +   TTI   +P +
Sbjct: 547 FYRVDKARSRKLGGTGLGLAIAKEMVEMHGGSIWASSKEGKGTTIYFTLPYE 598



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 26/165 (15%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + +   +      IL ++T  +   D+   +   N    E+ ++    + + P    L
Sbjct: 252 EAQASTEGERRKLDSILTHMTDGVIATDRRGRIILINEPAAEMLDVSRETVLSQPLISVL 311

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GT 412
                   K+  +  +        SV     T ++ + L      +  V  N  G   G 
Sbjct: 312 --------KIENEHKFDDLLTEQDSVILDFSTEEEPYILR----ANFSVIQNEAGFVSGL 359

Query: 413 IWMFENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEG 446
           I +  ++T Q  +D+E +           T +      ++ L++G
Sbjct: 360 ITVLHDVTEQEKIDMERREFVANVSHELRTPLTTMRSYLEALTDG 404


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 157/372 (42%), Gaps = 15/372 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   + +           +D   + +        I L N     ++      +      
Sbjct: 581 ERQQTQEELRFSQARFARILDIADDAIISINGFHNITLFNQGAEKIFGYCAQEVIGQGLD 640

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +     + + +       +  +     ER+ + G  +  S+   E SI  +     + 
Sbjct: 641 LLLPQRFFQAHRQHVADFGQSPNVARRMGERREIYGRRKDGSEFPAEASISKIDMGDEIF 700

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V + D    ++            + +K+ FV  VS+ELR+PLT+I G   +L +  L 
Sbjct: 701 YTVILRDVTERKQ-----------IERMKDEFVSVVSHELRTPLTSIYGSLGMLASGLLP 749

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + + +  + ++  + S+  L+ L+NDILD+  +++G  K+      + DL+ +    I  
Sbjct: 750 TDSEQGKRLLQIAADSTERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVNVIQP 809

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              +  + + +      G  +AD  R++Q  + +LSNA+ FSS GSTV L A ++  + +
Sbjct: 810 LADKAGVTLSI--SALSGQVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLGAQQEGDEVL 867

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            ++K+ G  IP D  +S+F RF        R   G GLGL+I +S +  HGG +   S  
Sbjct: 868 LTIKDTGRGIPTDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRIWAESIL 927

Query: 779 EGVTTINCRIPS 790
              +T    +P 
Sbjct: 928 GEGSTFYVTLPL 939


>gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040]
 gi|99038894|gb|ABF65506.1| histidine kinase [Ruegeria sp. TM1040]
          Length = 761

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 94/445 (21%), Positives = 188/445 (42%), Gaps = 22/445 (4%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSNPRGGTIWMFENLT 420
           A KL ++   +   E +  + ++  T  +      G+  L +          I  F+N  
Sbjct: 4   AEKLAQERRARLAAERLLELKQAELTDAN---RKLGRHALALTKRIGATQAEIATFKNEN 60

Query: 421 VQVD-----LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +V         K     +    +I    +G A F  D ++  +N A+ ++++  E    
Sbjct: 61  EKVKSDLNTANEKVEQAERRLWHSIQAFQDGFAFFDSDSKLIGANTAYLNIFEGVEEVSP 120

Query: 476 PGTHIR--NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             +++R   I         E    D + A++T            + L +D  L+      
Sbjct: 121 GVSYVRILQILTDEGLIDTEELSADSWRAMMTERWMSPAPEPTVVRLWNDRYLKLIDQRG 180

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +   +   +++T +V  E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +L
Sbjct: 181 HDGDIVSLALDITATVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAEL 240

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +   +L  +Q  Y   I  S   LL ++ND+LD + ++A  + L+     L   ++E
Sbjct: 241 LSDT---TLTEEQRLYANTIKNSGEALLVIINDVLDYSKIEADKLALHPEAFDLEACMHE 297

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VI 709
           V   +     +  + + V  D  + + F+ D  R+ QI + ++ NA+ F+++G     V 
Sbjct: 298 VVMLLQANARDKGLTLLVDYDLFMPTNFIGDPGRIRQILTNLIGNAIKFTNEGHVTARVT 357

Query: 710 LKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
                ++       S++++G  IP+D  + +F  F  V +    Q  G GLGL+I E  I
Sbjct: 358 GVPHPEDNTVMLHISIEDSGIGIPDDKIQHIFGEFNQVEDETNRQFEGTGLGLAITERLI 417

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L  G + + S     +    R+P 
Sbjct: 418 KLMDGEIWVESQLGKGSCFGFRLPL 442



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    V       +  +       A FD +  L   N +++ ++E  +  ++   S   +
Sbjct: 69  TANEKVEQAERRLWHSIQAFQDGFAFFDSDSKLIGANTAYLNIFE-GVEEVSPGVSYVRI 127

Query: 356 LEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L+ L     +  E+L+  +W+  +   + S         L N + L +I      G  + 
Sbjct: 128 LQILTDEGLIDTEELSADSWRAMMTERWMSPAPEPTVVRLWNDRYLKLIDQRGHDGDIVS 187

Query: 415 MFENLTVQVDLETKYNTLVKVQGET 439
           +  ++T  V  E +  +  +     
Sbjct: 188 LALDITATVHYEEELRSARERAEAA 212


>gi|307153191|ref|YP_003888575.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306983419|gb|ADN15300.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1560

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 114/673 (16%), Positives = 247/673 (36%), Gaps = 71/673 (10%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             +   +  E+ E       L      F+  F+     +         L  N  +    + 
Sbjct: 901  RANQQLRQEIFERQQTELALKKSEERFRASFEQAAVGMVLVSLEKRFLKVNPKF---CQM 957

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---------- 278
             G   ++ + ++         +  +     +    E ++       + +           
Sbjct: 958  LGYTEEELLQKTVLEITHPQDRSQVPQHIEKLITGEIITLSF--EKRFFNKTGVTVWTNI 1015

Query: 279  -IVRVLNSFGEAGIAIDV-----------SKEITVNDQLTHTYEILHNL----TVAIAIF 322
             I  V  + G+    ++V           ++     + L  +   L ++     V IA  
Sbjct: 1016 TISLVHGASGQPDYLMEVVEDITDKKRNEAERQAAREALQKSEAQLRSMFEYAAVGIAFV 1075

Query: 323  DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            D        N +  +        L   P      +F    + L +   +++   N    Y
Sbjct: 1076 DAQGRPFKSNPAIEKFLGYSSQELTQKP----FTQFTHPEDALVDLNLYQSLFANNRDTY 1131

Query: 383  KSSETHKDTWHLPNGQTLH----VIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKV 435
            +     +  +   +G+ +     V +  N +G     I M ++++     E +     + 
Sbjct: 1132 QM----EKRYIRKDGEIVWGHLTVSLVRNAKGKPQFAIGMIQDISDAKRSEAERQIAEEA 1187

Query: 436  QGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              E        ID +   + V    G+  L+N A  + + T    L   +          
Sbjct: 1188 LRENQAFLRNVIDTVPNFIFVKNRAGKYTLANQAMANAYGTTVQELEGKSDGDFHLVAAE 1247

Query: 489  RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII------PLPNAQT-MLT 541
                 +D   +  ++ +    E+     +L L +  V  +  I      P  NA   +  
Sbjct: 1248 ITLAGTDDQQVMNSLQSLLIPEQ-----SLTLANGEVRYFQTIKTPLVSPDGNAHYILGV 1302

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              ++T+  + ++ + +     ++  ++K+ F+  VS+E R+PLT+I+G+ +LL+      
Sbjct: 1303 ATDITERKQIQQEIEKALAKEKELHKLKSQFIDIVSHEFRTPLTSILGYAELLERHSDKL 1362

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               K+ +++  I  +   L +L+ D+L ++  ++G +  N + I + D   ++ + I   
Sbjct: 1363 TTEKKIKHLHNIQMAGQRLSDLIQDVLCISRAESGKLLYNPTLINVADFCQDLIEEIQIG 1422

Query: 662  MHENNIRIKVISDGKLGS-----FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            + +    I                  D + L  I + +LSN + +S  GS V L    +N
Sbjct: 1423 IGQ-GYEILFKQPNLRPHSSTDLIYLDEKLLRHILTNLLSNGIKYSPIGSRVELSLQYEN 1481

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               IF +++ G  IP +    +F+ F   ++ G   G GLGL+IV+ ++NLHGG +  +S
Sbjct: 1482 QQVIFEIRDQGIGIPLEDHPKLFDSFYRASNVGNIPGTGLGLNIVQKYVNLHGGTIDFTS 1541

Query: 777  SDEGVTTINCRIP 789
            + +  TT    +P
Sbjct: 1542 TVKVGTTFKVSLP 1554



 Score = 84.2 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 70/562 (12%), Positives = 173/562 (30%), Gaps = 61/562 (10%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
           R++  ++ + ++     ++    L  +      +      W   DET  I GQ     DI
Sbjct: 381 RKQVEISLRESQDRLAKAQEIAHLGNWEWNFLTHE---FFWS--DETYRIFGQ-----DI 430

Query: 106 PQTDTDLLSFENWLKFHH----YIKLSKAT----------EKLRKEGQSFDLVAETQNDC 151
            Q      +F   L          +L++A             LR +G+    + +TQ D 
Sbjct: 431 QQFLPTENAFFYCLHPDDRELVIKQLNQALYNHKSYKINYRILRPDGEIR--IVQTQADV 488

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
           +   +G   G         + G   ++ ++ L  ++L       + +  +    +   +Q
Sbjct: 489 SFDSQGNPLG---------MFGTVQDITDSKLMEQELRESEEKLRHIVTTTADGLIVMNQ 539

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
           +G I + N + +           +           +  +  I     +  F E       
Sbjct: 540 SGYIYFVNPAAESFFGLNANELSEYQWNFS--LNHDSTELAIEHLEGKPIFLEVKIVETL 597

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRY 327
            + +   ++ +           D+++     + L         +++NL   + +   +  
Sbjct: 598 WDGEPVYLISL----------RDITERKQAEEALKISEKRYRNLINNLHAGVVVHQADTS 647

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           +   N    EL E+    +    + D    FLR    +     +      + S  K  + 
Sbjct: 648 IALSNTKANELLELTPEQILGKTAFDLHWCFLRENGTVMPIEEYPV--NIVISTQKPVKN 705

Query: 388 HKDTWHLPNGQTL-HVIVTS----NPRGG---TIWMFENLTVQVDLETKYNTLVKVQGET 439
           +    + P  QT+  +++ +    N  G     +  F ++T     + +     +     
Sbjct: 706 YVIGINRPQSQTVVWLLINAFGEFNSNGQMNQIVVTFVDITEFKQAQEELQESKRRYVTL 765

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
                 G+     +G     N  ++ +      +       + I         +     +
Sbjct: 766 AQASPVGIFRTDVEGNCLYVNERWQEIAGLTWQQALGKGWSQAIDYNDQTRVLQEWKQAI 825

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +    +   +   G++  +    +  +         + T  ++ D   AE  L    
Sbjct: 826 INHVPFQAEYRFQRPDGSVTWVYGQAIAETDEQGILIGFLGTITDINDRKEAELKLQRLK 885

Query: 560 EALRKADEIKNSFVQHVSYELR 581
           + L +  E +   +Q  + +LR
Sbjct: 886 DELEQKVEKRTWNLQRANQQLR 907



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 120/373 (32%), Gaps = 19/373 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            LRI ++ G  +EL E     K L +    ++++  ++   V   D+  +  +   + + 
Sbjct: 248 ILRIFAVRGA-AEL-ERQQAEKTLRDSQQFYQLILSNISDAVLMTDEQKNFTYVCPNVET 305

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRV 282
                    Q       KL  E +       S  E    E   T + G        + RV
Sbjct: 306 IFGYSCQEIQTMKT-IEKLLGENLFDIGQLESCGEIPNIEQKITDKSGKTHVVLVNVKRV 364

Query: 283 LNSFGEAGI-AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-----NRYLQFHNRSFV 336
             + G+      D+++   V   L  + + L      IA           +  F +    
Sbjct: 365 SINEGKYLYTCRDITERKQVEISLRESQDRLAKAQE-IAHLGNWEWNFLTHEFFWSDETY 423

Query: 337 ELWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHL 394
            ++  D   FL T  +    L        + +QLN   +    + + Y+      +   +
Sbjct: 424 RIFGQDIQQFLPTENAFFYCL-HPDDRELVIKQLNQALYNHKSYKINYRILRPDGEIRIV 482

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
                +      NP G      +++T    +E +     +     +   ++G+ V    G
Sbjct: 483 QTQADVSFDSQGNPLG-MFGTVQDITDSKLMEQELRESEEKLRHIVTTTADGLIVMNQSG 541

Query: 455 RIKLSNPAFRSLWKTEENRL---SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            I   NPA  S +    N L        + + +   +  + E     L   I+ +  D  
Sbjct: 542 YIYFVNPAAESFFGLNANELSEYQWNFSLNHDSTELAIEHLEGKPIFLEVKIVETLWDGE 601

Query: 512 KSLQGTLELLSDS 524
                +L  +++ 
Sbjct: 602 PVYLISLRDITER 614



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 11/155 (7%)

Query: 164  AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
            A   I  +       AE  +  + L  + +  + + D++   ++ +++AG    AN +  
Sbjct: 1164 AIGMIQDISDAKRSEAERQIAEEALRENQAFLRNVIDTVPNFIFVKNRAGKYTLANQAMA 1223

Query: 224  KNTETEGIVFQKAIGESRKLFKEEI-----KKRMISSSALEKNFCETVSTLEHGNNKSYK 278
                T     +        L   EI       + + +S       E   TL +G  + ++
Sbjct: 1224 NAYGTTVQELEGKSDGDFHLVAAEITLAGTDDQQVMNSLQSLLIPEQSLTLANGEVRYFQ 1283

Query: 279  IVRVL--NSFGEA----GIAIDVSKEITVNDQLTH 307
             ++    +  G A    G+A D+++   +  ++  
Sbjct: 1284 TIKTPLVSPDGNAHYILGVATDITERKQIQQEIEK 1318


>gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
 gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
          Length = 1522

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 119/650 (18%), Positives = 237/650 (36%), Gaps = 61/650 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
              +  + ++  +    ++  +    V   D   +I+W N  +++ T   G    + IG+
Sbjct: 365 RAEMLARNMTADLERLALVAKNTSNAVVITDVKRNIVWVNDGFERIT---GYSQDEVIGK 421

Query: 240 SRKLF------KEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIV------RVLNSF 286
           S           + +   M ++    ++F  E V+  + G     ++             
Sbjct: 422 SPGKLLQCSNTDQSVATEMKTALDAGESFKGEIVNRTKSGQEYWIELEIQPRYNDKNELI 481

Query: 287 GEAGIAIDVSKEITVNDQL-------THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           G   I  D+S+      +L             L NL   I+  D++  +   N +F  + 
Sbjct: 482 GFMAIESDISERKATYQRLEAALRENNALLSTL-NLHGIISTADRDGIITDVNDAFCTIS 540

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 L            L  ++          W      +    E         +G  
Sbjct: 541 GYSREELIGQTY------RLVDSHTHSTDFWQSMWNNIANGISWRGEICNKA---KDGSL 591

Query: 400 LHVIVTSNP----RGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
             V  T  P     G     I +  ++T   + +              D    G+  +  
Sbjct: 592 YWVDTTIAPFNNSDGQIERYISIQVDITANKNQQANLIIARNQLVRAADVAELGIWTWNI 651

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
                  +     ++   E   +    +    +      +  D  D+ +AI T+ ++E  
Sbjct: 652 TENTFSFDDRMNDIYGVPEELHNAPIPL----SYWYSCLHPEDIPDVKSAIKTALENESV 707

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKA 565
             Q    ++ D +                    M    ++T    AE  L    EA  +A
Sbjct: 708 YRQIFRIVVRDQIHFIQSTGTVERDESGKAMLMMGINRDITQQREAEDILKTAREAAEEA 767

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K++F+ ++S+ELR+P+  I+G   LL+ +    L+ KQ+ Y     A++  LL L+N
Sbjct: 768 NKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLDRKQADYAVKSEAATRTLLRLLN 824

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DILD + +++G M+L      ++ +L ++   +++ +    + +    D  L  FV  D 
Sbjct: 825 DILDFSKIESGKMELECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPSLPQFVEGDS 884

Query: 685 QRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            RL QI + +  NA+ F+  G  V    ++     +    F V++ G  I  +  +S+F+
Sbjct: 885 MRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIFS 944

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F        RR  G GLGL I + F+ L GG +++ S     +  +  +
Sbjct: 945 GFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTLESQPGQGSLFHFTL 994


>gi|91976495|ref|YP_569154.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91682951|gb|ABE39253.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 771

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 109/525 (20%), Positives = 213/525 (40%), Gaps = 51/525 (9%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANK 364
           +     L+     +  +D +R   F ++S   L  ++        S ++LL F   +A  
Sbjct: 247 SRIDTALNRGRCGLWDWDLSRGRIFWSQSMFTLLGLE--------SRNDLLTFGEVNALV 298

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFE 417
             + ++  T  + + +       H       NG  + + +               I +  
Sbjct: 299 NSDDIDLFTIGDELIAGAADHIDHSFRMRHANGHWIWLRMRCELSQESPTENKHLIGIAV 358

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +         + I+ L E   ++  D R+ L N  F+ L K  ++ ++PG
Sbjct: 359 DVTEQKSLAERTVEADLRLRDAIETLPEAFVLWDSDNRLVLCNSHFQRLHKLPDSAIAPG 418

Query: 478 THIRNIAATCSRYYNESDGWDLFAA-------IITSFDD-------ERKSLQGTLELL-- 521
           T    +          +   D+ A             DD       ER++  G    +  
Sbjct: 419 TSYETVIEVGQMPEIRTRQCDVGAGSPPGARTFEAQLDDGSWLHISERRTKDGGYVAVGT 478

Query: 522 --------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                         +D  L  ++  L  +Q +       +     R  +E+     +A++
Sbjct: 479 NITRIKAHEQKLVDNDLRLRATVADLKISQ-VKLERQAIELADLARKYSEEKNRAEEANQ 537

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVND 626
            K+ F+ ++S+ELR+PL  IIGF++++ +   G+L + K  +Y   I  S   LL ++ND
Sbjct: 538 AKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVIND 597

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ ++AG M+L    + L   L E  + +A +    ++ ++   +  +   VADR+ 
Sbjct: 598 ILDMSKIEAGRMRLEMEELDLARTLGESLKVVAGRADNKHLELRAEIEDGIP-IVADRRA 656

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + QI   +LSNA+ F+  G  V +++       +  + ++G  I     + +   F    
Sbjct: 657 IKQILINLLSNAVKFTPDGGRVTVRSRTLEDSIVMMIADSGIGIAPQSLRRLGQPFEQVE 716

Query: 747 H--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   G GLGL+I +S   LHGG + + S+    T +   +P
Sbjct: 717 SQLTKTYHGSGLGLAIAKSLTRLHGGSMRLRSTLGAGTVVMVTLP 761



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 16/161 (9%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++ ++ ++         + +  L  A  ++D +  L   N  F  L ++  +
Sbjct: 354 IGIAVDVTEQKSLAERTVEADLRLRDAIETLPEAFVLWDSDNRLVLCNSHFQRLHKLPDS 413

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHV 402
            +A   S + ++E      ++PE       +     V   S     T+   L +G  LH+
Sbjct: 414 AIAPGTSYETVIEV----GQMPEI------RTRQCDVGAGSPPGARTFEAQLDDGSWLHI 463

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                  GG + +  N+T     E K          T+  L
Sbjct: 464 SERRTKDGGYVAVGTNITRIKAHEQKLVDNDLRLRATVADL 504


>gi|295401271|ref|ZP_06811243.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111907|ref|YP_003990223.1| signal transduction histidine kinase NtrB [Geobacillus sp. Y4.1MC1]
 gi|294976678|gb|EFG52284.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217008|gb|ADP75612.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. Y4.1MC1]
          Length = 744

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 128/642 (19%), Positives = 253/642 (39%), Gaps = 61/642 (9%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----K 223
             L  +    A   L+ +++ +   +FK +F+     +   D+ G  +  N ++      
Sbjct: 130 FDLVIMRDISARKALERERIIHEF-LFKDVFNRAVDGIVIFDEFGRFIDVNPAFCMSLNL 188

Query: 224 KNTETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           +  +   + FQ+ I  E    F   + +     +A  +           G  K +++   
Sbjct: 189 EKAKLLNLSFQQFIAKECVDDFVRLLAELKEKGTAKGELSLVRF----DGTVKMFELTTT 244

Query: 283 LNSFGEAGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFV 336
            N +    +AI  DV++   +  +L  + E    I      AI I+D   Y+   NR+  
Sbjct: 245 SNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQAHEAILIWDDRGYILNANRAAS 304

Query: 337 ELWEIDLAFLATNPSNDELLEFL-RSANKLPEQLNWKTWKENIFSVYKSSETHKD--TWH 393
             +E+ L  L        LL+FL R   K+          + +F+ ++ +   +D  T+H
Sbjct: 305 RTFELPLNLLVRK----NLLDFLDRDDEKV----------QRVFAQFRKTGEIRDELTFH 350

Query: 394 LPNGQTLHVIVT---SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           +PNG+   +  T       G  + +F N+T +  +E +     +      DH   G+ ++
Sbjct: 351 MPNGEDKQLEFTMKQGAIDGYHLTIFRNVTERRKMEKELRESEQKFRSIFDHAMNGILLW 410

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
           G D RI   NP     ++  + +L        I     +++++            +  D 
Sbjct: 411 GEDYRILDVNPIACEFFQAAKEQLLHRPITAFIPEKARKHFDKLIQQCDRCGEAYAEMD- 469

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                G  + + +  L+  IIP      M+   ++T+    E  L + +           
Sbjct: 470 --FSSGEKQKIVEFALKKEIIP---GVGMIMLRDITERKELELQLRKSDTLNVVG----- 519

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
                +++E+R+P+T + GF  LL+    GS+    S Y   I +    + +++ + L L
Sbjct: 520 ELAAGIAHEIRNPMTALKGFIQLLQ----GSIKEDYSMYFNVIMSELKRIESIITEFLVL 575

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A   A    + Y    +  ++ +    I+ +   +N++I       +     +  +L Q+
Sbjct: 576 AKPQA----IQYQQNDVCKIMQDTIDLISAQAMMHNVQIVADFALPIPCIYCEPNQLKQV 631

Query: 691 FSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           F  IL NA++   KG  V ++  R D+     S+ + G  IP+D  K +   F       
Sbjct: 632 FINILKNAIEVMPKGGEVTVRIGRLDDSHIRISITDQGCGIPQDKIKKLGEPFY----TT 687

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + RG GLGL +    I  H G + + S     TT +  +P +
Sbjct: 688 KERGTGLGLMVSYKIIEEHQGKIDVESEVGVGTTFHITLPIE 729



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 104/284 (36%), Gaps = 28/284 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   + +QL     I      AI IF+++      N +  +L+E++   L         
Sbjct: 22  EENRRLKEQLNGYSIIFERSLDAIVIFNKSGEFVDVNEAACQLFEMEKRELIGK-KMTMF 80

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT--- 412
           L+ +          +   +++++   +  S + +    L NG+  H+  +          
Sbjct: 81  LDLV--------PPDILMFQQSMLHKF-GSFSDELLVKLRNGKVKHIEFSMKKDAFNEFD 131

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +  +++ +  LE +      +  +  +   +G+ +F   GR    NPAF      E+ 
Sbjct: 132 LVIMRDISARKALERERIIHEFLFKDVFNRAVDGIVIFDEFGRFIDVNPAFCMSLNLEKA 191

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEY--- 528
           +L   +  + IA  C          D F  ++     E+ + +G L L+  D  ++    
Sbjct: 192 KLLNLSFQQFIAKEC---------VDDFVRLLAEL-KEKGTAKGELSLVRFDGTVKMFEL 241

Query: 529 -SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            +   + +   M    +VT+    E  L +  E  R   E  + 
Sbjct: 242 TTTSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQAHE 285



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 121/353 (34%), Gaps = 39/353 (11%)

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQSF-DLVAETQNDCA----IKIEGRVSGS--CAF 165
           LSF+ ++         +   +L+++G +  +L     +       +     V      A 
Sbjct: 196 LSFQQFIAKECVDDFVRLLAELKEKGTAKGELSLVRFDGTVKMFELTTTSNVYSGFYMAI 255

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           +R         ++ E      KL      F+ +F+     +   D  G IL AN +  + 
Sbjct: 256 MR---------DVTERKNMEIKLQKSEERFRAIFEQAHEAILIWDDRGYILNANRAASRT 306

Query: 226 TETE-GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV--RV 282
            E    ++ +K + +      E++++         +   E    + +G +K  +    + 
Sbjct: 307 FELPLNLLVRKNLLDFLDRDDEKVQRVFAQFRKTGEIRDELTFHMPNGEDKQLEFTMKQG 366

Query: 283 LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
                   I  +V++    E  + +       I  +    I ++ ++  +   N    E 
Sbjct: 367 AIDGYHLTIFRNVTERRKMEKELRESEQKFRSIFDHAMNGILLWGEDYRILDVNPIACEF 426

Query: 339 WEIDLAFLATNPSNDELLEFLR-SANKLPEQLNW--KTWKENIFSVYKSSETHKDTWHLP 395
           ++     L   P    + E  R   +KL +Q +   + + E  FS  +  +  +      
Sbjct: 427 FQAAKEQLLHRPITAFIPEKARKHFDKLIQQCDRCGEAYAEMDFSSGEKQKIVEF----- 481

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
               L   +     G  + M  ++T + +LE +      +    +  L+ G+A
Sbjct: 482 ---ALKKEIIP---GVGMIMLRDITERKELELQLRKSDTL--NVVGELAAGIA 526



 Score = 38.0 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 91/292 (31%), Gaps = 41/292 (14%)

Query: 48  RNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD------GKDETPEIIGQLHQ 101
           R+   +K  E     SE      ++ ++  + +   ++WD        +       +L  
Sbjct: 257 RDVTERKNMEIKLQKSE-----ERFRAIFEQAHEAILIWDDRGYILNANRAASRTFELPL 311

Query: 102 RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFD-LVAETQNDCAIKIEGRVS 160
            + + +   D L            K+ +   + RK G+  D L     N    ++E  + 
Sbjct: 312 NLLVRKNLLDFL-------DRDDEKVQRVFAQFRKTGEIRDELTFHMPNGEDKQLEFTMK 364

Query: 161 GSCAFLRILSLDGIY----SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
                    ++DG +      + E     K+L      F+ +FD     +    +   IL
Sbjct: 365 QG-------AIDGYHLTIFRNVTERRKMEKELRESEQKFRSIFDHAMNGILLWGEDYRIL 417

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH---GN 273
             N       E      ++ +      F  E  ++       + + C           G 
Sbjct: 418 DVNP---IACEFFQAAKEQLLHRPITAFIPEKARKHFDKLIQQCDRCGEAYAEMDFSSGE 474

Query: 274 NK---SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH--TYEILHNLTVAIA 320
            +    + + + +       +  D+++   +  QL    T  ++  L   IA
Sbjct: 475 KQKIVEFALKKEIIPGVGMIMLRDITERKELELQLRKSDTLNVVGELAAGIA 526


>gi|260462368|ref|ZP_05810576.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031862|gb|EEW33130.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
          Length = 773

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 106/500 (21%), Positives = 209/500 (41%), Gaps = 44/500 (8%)

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            + +RS  ++   +        S  E+ E +      PE  +       I +        
Sbjct: 273 MYWSRSMYDMLGYEPCETML--SFGEVDEIIH-----PEDGDLFELANRIVAREIDHIDQ 325

Query: 389 KDTWHLPNGQTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                  +GQ + +   +       P    I +  ++T Q  L  +           I++
Sbjct: 326 VFRMRHADGQWVWMRARAQVMDPEAPEIQLIGIAVDVTEQRHLALRSEAADLRLRTAIEN 385

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-----HIRNIAATCSRYYNESDGW 497
           ++E   ++    R+ + N  ++      +  + PG        R +A    R    ++G 
Sbjct: 386 INESFVLWDSAQRLIMCNSKYQQDNGLSDRDVMPGVTRVSLEERMLAFASERRLANTNGP 445

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVL----EYSIIPLPNAQTMLTFVNVTDSVR--- 550
              A       D R      L+     ++    + + I L   + + +   +  ++    
Sbjct: 446 QGGATFERQLSDGRWLQVNELKTRDGGIVSVGSDITQIKLHQEKLVDSERRLMATIHDLS 505

Query: 551 ---------------AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                            R   ++ E    A+  K+ F+ ++S+ELR+PL  IIGF++L++
Sbjct: 506 LARRAEEERSRELVDLNRKYMKETERAEAANRAKSEFLANMSHELRTPLNAIIGFSELME 565

Query: 596 TSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               G L +S+  +Y   I++S   LL ++NDILD++ ++AG   L+   I L  L++E 
Sbjct: 566 QGLFGPLGSSRYEEYATDINSSGKYLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISET 625

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + ++ +  +  I ++      L +  ADR+ + QI   +LSNA+ F+ +G  + ++A  
Sbjct: 626 VRVVSLQAAQKAITVETRIADAL-TLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARN 684

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +G  + ++++NG  IP++    +   F  V N       G GLGL+I  S   L GG +
Sbjct: 685 TSGALVLTIEDNGCGIPKEALGKLGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGAL 744

Query: 773 SISSSDEGVTTINCRIPSKE 792
            I S++   T ++ RIP K+
Sbjct: 745 KIRSTEGVGTIVSVRIPVKK 764


>gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1562

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 123/697 (17%), Positives = 256/697 (36%), Gaps = 102/697 (14%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            + GI  ++ E  +  ++L         +      ++      G   + N + +K T   G
Sbjct: 391  VVGINEDITEQKMAEQELRQERDYSSRIIQMSPAIICGISSDGTCNYVNPAGEKVT---G 447

Query: 231  IVFQKAIGES--RKLFK----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------ 278
               Q+ +G+     L+     E++++             E   T + G+ +  +      
Sbjct: 448  YSAQELVGKDWWSTLYPGSSYEQVRQLFQDMQNGPVQNHEMTLTRKDGHERIVEWNSLNR 507

Query: 279  IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----------NLTVAI-AIFDQNRY 327
            + +  N     G   D++      ++L    + L           ++T+ +  I D    
Sbjct: 508  LDQEENLLEVVGFGHDITDRRIAEEELFKRQDELEKTTRELEGFFDVTLGLLMIADFQGR 567

Query: 328  LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI--FSVYKSS 385
            +   NR++ ++    L  +A       LL+F+          + +  +E +   S  +  
Sbjct: 568  ILKLNRAWEDILGYPLNEIA----RSNLLDFVH-------PRDQEKTREAMSSLSRGEHV 616

Query: 386  ETHKDTWHLPNGQTLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                + +   NG  + V   ++ R G I+    ++T  + L+ +         + ID   
Sbjct: 617  RDVVNRYQHKNGGYIWVRWQASSREGLIYASANDITESIMLQERLAQEKDFLQQIIDSSP 676

Query: 445  EGVAVFGPDGRIKLSNPAFRSLWKTEENRL---------SPGTHIRNIAATCSRYYNESD 495
              +      GR  L+N     L+ T +  +         +    I+              
Sbjct: 677  NPIFAKDWHGRHTLANTRVAELFGTTKEAMLGKTDYDMTATQEEIQAFLQDDREVMQSGK 736

Query: 496  GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
               +    +T    + +  Q T        L  S  P    Q M    ++T  + +E  +
Sbjct: 737  QKHIPQEPLTDSQGQVRWFQTT-----KVPLMLSHDP-KKRQVMGIATDITHRIESEHQV 790

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                E    A+  K+ F+ ++S+E+R+P+  +IG +   +     SL+ +Q  Y+  IS 
Sbjct: 791  QLAREEAEAANRAKSDFLANMSHEIRTPMNAVIGLS---QLLLQTSLDDRQRDYLNKISN 847

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            SS +LL ++NDILD + ++AG ++L+  T  +++LL+++K    +   +  + I      
Sbjct: 848  SSRMLLGIINDILDYSKIEAGKLELDMHTFRMDELLDQMKTLFGSTAEDKGLEIIFNIST 907

Query: 676  KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------------------------- 709
             +   +  D  RL Q+F+ +L NA+ F+ KG   +                         
Sbjct: 908  DVPRILKGDSLRLGQVFTNLLGNAVKFTEKGHVELAVHKSEVRSQESEVRDQGTEVRSQD 967

Query: 710  -----------LKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
                       L+AA  + +      +F +K+ G  + ++  + +F  F        R  
Sbjct: 968  LGQGTGDRGQGLEAADRDSESKIVRLLFEIKDTGIGMDDEQVQRLFQPFSQADTSTTRKY 1027

Query: 752  RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL I    +   GG + + S+    +     I
Sbjct: 1028 GGTGLGLVISHKLVQRMGGTLQVDSTPGQGSRFYFEI 1064



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/462 (13%), Positives = 130/462 (28%), Gaps = 47/462 (10%)

Query: 145 AETQNDCAIKIEGRVSGSCAF--------LRILSLDGIYSELAETTLKCKKLSNHISVFK 196
             T +   + +   ++   A         L I  L      L       K+L +    F+
Sbjct: 105 VLTASGDFVHVSVEIARLAAISLLVISAGLWIRDLMRTRQMLLR---NEKRLEDSEQRFR 161

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISS 255
            + ++    +W  D  G   +      +  +  G    + +G S       E  +R+   
Sbjct: 162 DVAEAAGEYIWEIDPGGTYSFLTP---RVEDVLGRRVDEVLGRSPFDFMPHEEARRVEKM 218

Query: 256 SA----LEKNFC--ETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVND 303
            A      +++   E  S    G     ++  +          G  G  +D++ E     
Sbjct: 219 LAGWAEKGESWQGLEHQSVRPDGRIIWQRVSGMPVKDSEGELKGFRGTGLDITAEKEARQ 278

Query: 304 QLTHTYEILHNLTVA--IAIFD---QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                 E L   T A  + I+D    + YL+  +     ++ +       +  +      
Sbjct: 279 ATQELTERLRLATEAAELGIWDLRISDGYLE-WDEGMFRIYGVSRDDFTNSVKDWT---- 333

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV---TSNPRGG---- 411
                 LPE               + +   +      +G+  H+     + +   G    
Sbjct: 334 ---DALLPEYREQAEQDFKAGIAGQGAYRSEFKIRRKDGEIRHIRAMAQSIHDETGNPVR 390

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + + E++T Q   E +           I      +     DG     NPA   +     
Sbjct: 391 VVGINEDITEQKMAEQELRQERDYSSRIIQMSPAIICGISSDGTCNYVNPAGEKVTGYSA 450

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L        +    S         D+    + + +       G   ++  + L     
Sbjct: 451 QELVGKDWWSTLYPGSSYEQVRQLFQDMQNGPVQNHEMTLTRKDGHERIVEWNSLNRLDQ 510

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                + +    ++TD   AE  L ++ + L K       F 
Sbjct: 511 EENLLEVVGFGHDITDRRIAEEELFKRQDELEKTTRELEGFF 552



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/515 (11%), Positives = 155/515 (30%), Gaps = 65/515 (12%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNET---YSFLSEICDQLSKYHSLLT 77
           S +IA    I+ ++++  + I  L+R R  L +             ++ +   +Y   + 
Sbjct: 116 SVEIARLAAISLLVISAGLWIRDLMRTRQMLLRNEKRLEDSEQRFRDVAEAAGEYIWEID 175

Query: 78  ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137
                + +      TP +   L +R+D     +      +++      ++ K      ++
Sbjct: 176 PGGTYSFL------TPRVEDVLGRRVDEVLGRSPF----DFMPHEEARRVEKMLAGWAEK 225

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAF--------LRILSLDGIYSELAETTLKCKKLS 189
           G+S+    +     +++ +GR+                +    G   ++       +   
Sbjct: 226 GESW----QGLEHQSVRPDGRIIWQRVSGMPVKDSEGELKGFRGTGLDITAEKEARQATQ 281

Query: 190 NHISVFKVLFDSLDFLVW-HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK--- 245
                 ++  ++ +  +W  R   G + W    ++    +           +  L     
Sbjct: 282 ELTERLRLATEAAELGIWDLRISDGYLEWDEGMFRIYGVSRDDFTNSVKDWTDALLPEYR 341

Query: 246 EEIKKRMISSSALEKNFCETVST-LEHGNNKSYKIV------RVLNSFGEAGIAIDVSK- 297
           E+ ++   +  A +  +        + G  +  + +         N     GI  D+++ 
Sbjct: 342 EQAEQDFKAGIAGQGAYRSEFKIRRKDGEIRHIRAMAQSIHDETGNPVRVVGINEDITEQ 401

Query: 298 ---EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
              E  +  +  ++  I+      I     +    + N +  ++       L        
Sbjct: 402 KMAEQELRQERDYSSRIIQMSPAIICGISSDGTCNYVNPAGEKVTGYSAQELVGKDWWST 461

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGG-- 411
           L              +++  ++    +     + H+ T    +G    V   S  R    
Sbjct: 462 LYP----------GSSYEQVRQLFQDMQNGPVQNHEMTLTRKDGHERIVEWNSLNRLDQE 511

Query: 412 -----TIWMFENLTVQVDLET----KYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLS 459
                 +    ++T +   E     + + L K   E     D     + +    GRI   
Sbjct: 512 ENLLEVVGFGHDITDRRIAEEELFKRQDELEKTTRELEGFFDVTLGLLMIADFQGRILKL 571

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           N A+  +     N ++    +  +         E+
Sbjct: 572 NRAWEDILGYPLNEIARSNLLDFVHPRDQEKTREA 606


>gi|170741231|ref|YP_001769886.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195505|gb|ACA17452.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 873

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/397 (23%), Positives = 162/397 (40%), Gaps = 22/397 (5%)

Query: 415 MFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           +  +L  +V + T+       +   T+D + +G+ +    G + ++N     L   +   
Sbjct: 331 INRDLERRVAVRTRELAGKEALLTMTLDAMDQGLVMVDGAGIVAVTNRRAADLLGLDPAF 390

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L+       +          +         +   D +R   +      +  VLE +    
Sbjct: 391 LASRPSCEAMREALQARGEFAALDPAIRDGLRDRDLDRIGARYERVRPNGQVLEVANTAT 450

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTN 586
            +   +  + +VT     E AL E +        A   A   K  F+  +S+E+R+PLT 
Sbjct: 451 ADGGILRIYTDVTARKAVETALAEAHRLAQQARRAAEAASAAKTDFLATMSHEIRTPLTA 510

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G+ DLL       L ++Q++ V  I  +   L  +V+D+LD + ++AG + L      
Sbjct: 511 VLGYADLLMAR--SDLEAEQARLVGRIVTAGEALRTIVDDVLDFSRIEAGRVDLAPRPFS 568

Query: 647 LNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L DL+ E    +  +     + I V I  G     V D  RL QI   +L+NA+ F+  G
Sbjct: 569 LADLIEEALALVRPEADRKGLPIAVAIEPGLPPRLVGDVDRLRQILLNLLNNAVKFTPAG 628

Query: 706 STVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
           S + L  ARD          + SV++ G  IP D    +F RF         Q  G GLG
Sbjct: 629 S-IGLAVARDPTGPAEGRGLLISVRDTGIGIPADKHARLFERFSQVDGSIQRQYGGTGLG 687

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCR--IPSKE 792
           L+I    +    G + + S +   +T   R  +P+ E
Sbjct: 688 LAISRRLVEAMHGRIGVESREGEGSTFWFRLALPAAE 724



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 11/159 (6%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
            +     I  D+ + + V  +     E      L  +   + + D    +   NR   +L
Sbjct: 324 QADALQAINRDLERRVAVRTRELAGKEALLTMTLDAMDQGLVMVDGAGIVAVTNRRAADL 383

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLP--EQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
             +D AFLA+ PS + + E L++  +    +       ++       +    +     PN
Sbjct: 384 LGLDPAFLASRPSCEAMREALQARGEFAALDPAIRDGLRDRDLDRIGA----RYERVRPN 439

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
           GQ L V  T+   GG + ++ ++T +  +ET      ++
Sbjct: 440 GQVLEVANTATADGGILRIYTDVTARKAVETALAEAHRL 478


>gi|220932996|ref|YP_002509904.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
 gi|219994306|gb|ACL70909.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
          Length = 594

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 163/371 (43%), Gaps = 28/371 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +  +E  +    +        + +G+ V   + +I + NPA R +       L+ G   R
Sbjct: 244 ERKIEEIFREKSRT-EAVFTSIVDGLIVTDNEKKITMVNPAARKILG-----LNKGVLGR 297

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQTM 539
           +I      +  +         ++ +  +++K L+  L  +     ++  +  P+ N +  
Sbjct: 298 DIIEVIRHHKVD--------QLLETSLEKKKILKEELNFQTPGSKIIRLNFAPIENKEGQ 349

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +    +  +   E         LR+ ++++  FV +VS+EL++PLT+IIG+ D +  + +
Sbjct: 350 VAGGLIVLTDVTE---------LRRLEQLRKEFVANVSHELKTPLTSIIGYIDTIIDNDI 400

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              ++   +++  I   +  L  L+ D+LDL+ ++A   ++      LN ++ ++   + 
Sbjct: 401 KD-DTTIKRFLSIIKDEADRLYLLIKDLLDLSKLEAKRGEVILQPGDLNKIVKKIYLMLQ 459

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    +I +K+    KL       +++ Q+   ++ N + ++  G  VIL+A  +N   
Sbjct: 460 EQAESKDIDLKLDIKEKLPFVYLIPEQIEQVLINLVDNGIKYTEPGGRVILRAYEENNRV 519

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V++NG  IPE+    +F RF            G G+GLSIV+  I  H   + + S 
Sbjct: 520 VVEVEDNGIGIPEEDQGRIFERFYRVDKARSRSMGGTGIGLSIVKHIIKNHDSEIKVESE 579

Query: 778 DEGVTTINCRI 788
               +     +
Sbjct: 580 PGKGSLFRFYL 590


>gi|301059563|ref|ZP_07200475.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300446328|gb|EFK10181.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 1141

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 158/376 (42%), Gaps = 26/376 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI------ 480
            K +   +     ++ + EG       GR+   N +   +     + L    +       
Sbjct: 449 QKIHESEEKYRTILESIEEGYFEVDLAGRLTFFNDSVCRILGYTPDELKGMENRDYTDPE 508

Query: 481 --RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             R +    +  Y      +     IT  D E+++L+ T  LL +S  E S         
Sbjct: 509 TSRRMYRAFNETYRTGRPANFLGYRITRKDGEQRNLELTASLLKNSEGEPS-------GF 561

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                +VT   RAE AL  +      A+  K+ F+ ++S+E+R+PL  IIG T+L   + 
Sbjct: 562 RGVIRDVTGRKRAE-ALHREKLTAEAANRAKSQFLANMSHEIRTPLNGIIGMTEL---AM 617

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +  ++SK    ++ I   S  LL ++NDILD + ++A +++L   +     ++  V ++ 
Sbjct: 618 MRDMDSKHRNILQTIQTESNSLLVIINDILDFSKIEAEMLQLEEISFDPASVVENVVKAF 677

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
             +  +  + I V  +  +    + D  RL QI   ++ NA+ F+ KG   +  + A D 
Sbjct: 678 VHRAEQKGLGITVSMERDIPDGVIGDPGRLRQILINLVGNAVKFTQKGEIGIEARVAEDL 737

Query: 717 G---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                  F+VK+ G  IP+D  K++F  F        R   G GLG +I +    L GG 
Sbjct: 738 DKRIKLRFAVKDTGIGIPQDKKKTIFKSFTQADSSTTRKYGGTGLGTTISKHLAELMGGE 797

Query: 772 VSISSSDEGVTTINCR 787
           + + S     +     
Sbjct: 798 IGVESEVGTGSIFWFT 813



 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 59/194 (30%), Gaps = 31/194 (15%)

Query: 274 NKSYKIVRVLNSFGEAG-IAIDVSKEIT---VNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
            +S+    +    G A   AI++ + +T   +++       IL ++       D    L 
Sbjct: 420 KRSFTESDMNLLKGIASQAAINIVEAMTFQKIHESEEKYRTILESIEEGYFEVDLAGRLT 479

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           F N S   +       L                    +    +         Y++     
Sbjct: 480 FFNDSVCRILGYTPDELKGM-----------ENRDYTDPETSRRMYRAFNETYRTGRPAN 528

Query: 390 DTWH---LPNGQTLHVIVTS----NPRG---GTIWMFENLTVQVDLETKYNT------LV 433
              +     +G+  ++ +T+    N  G   G   +  ++T +   E  +          
Sbjct: 529 FLGYRITRKDGEQRNLELTASLLKNSEGEPSGFRGVIRDVTGRKRAEALHREKLTAEAAN 588

Query: 434 KVQGETIDHLSEGV 447
           + + + + ++S  +
Sbjct: 589 RAKSQFLANMSHEI 602


>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1209

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/403 (23%), Positives = 164/403 (40%), Gaps = 38/403 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L  +Y+ ++      +D + + V V   +  I  +N A   L +  +         R I
Sbjct: 388 RLMDRYHEMLTFNTMVLDAIPDPVFVVDSNMHIMHANRATMDLAEEHDPEELRYYTCRQI 447

Query: 484 AATCSRYYNE------SDGWDLFAAIITSFDDERKS---LQGTLELLSDSVLEYSIIPLP 534
                    E        G D+    I  +D        ++   ++L D     +     
Sbjct: 448 FNADCCGLPECPIATLQRGEDVDTRQIIRWDRGEGRVMYIRPRAKVLRDREGNIAGYLEL 507

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNI 587
                       D  +  + L   NE         R+A   K+ F+ ++S+E+R+P+  I
Sbjct: 508 AQDVTALMEKEQDLEQKNQELMVLNEKYQEAARQAREASRAKSEFLANMSHEIRTPMNAI 567

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G T+L   ++   L  +Q +Y+  I  SS  LL L+NDILD + ++AG + L Y    L
Sbjct: 568 MGMTELAGNTE---LTPEQKEYLSIIQNSSESLLALLNDILDFSKIEAGKLDLEYIDFSL 624

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
            + ++    S+A   H+  + + V  +  +   F  D  RL Q+   ++ NA+ F+ +G 
Sbjct: 625 RETVHNAVYSVAMLAHQKGVELVVRVEPDMEDGFKGDPDRLRQVLVNLVGNAIKFTQQGE 684

Query: 707 T-VILK----------AARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
             V ++          AARD G       +F V + GS I  D  + +F  FV      R
Sbjct: 685 VQVEVRLAAAEEMLQHAARDEGYLSKLQILFRVVDTGSGIAWDKQEGIFEAFVQADGSSR 744

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGLSI    + +  G + + S     +T +  +P +
Sbjct: 745 RKYGGTGLGLSISSRLVEMMKGRIWMQSEPGRGSTFSFVLPLE 787



 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 17/156 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVL----FDSLDFLVWHRDQAGDILWANISYKKNTET 228
           G   EL + T    +L +             D++   V+  D    I+ AN +     E 
Sbjct: 374 GSRDELGQLTSDFNRLMDRYHEMLTFNTMVLDAIPDPVFVVDSNMHIMHANRATMDLAEE 433

Query: 229 EGIVFQKAIGESRKLFKEE----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIV---- 280
                 +     R++F  +     +  + +    E      +   + G  +   I     
Sbjct: 434 HDPEELRYYT-CRQIFNADCCGLPECPIATLQRGEDVDTRQIIRWDRGEGRVMYIRPRAK 492

Query: 281 ----RVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
               R  N  G   +A DV+  +     L    + L
Sbjct: 493 VLRDREGNIAGYLELAQDVTALMEKEQDLEQKNQEL 528


>gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 1018

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 164/379 (43%), Gaps = 16/379 (4%)

Query: 420 TVQVDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           TV+  +  +   L    +      D  + G+A+  P+GR    N          + +L  
Sbjct: 212 TVEERIRERTAELWQQEERFRSAFDSAAIGMAILTPEGRFVRVNRVLCDTVGYTDEQLLQ 271

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLP 534
                 +     R  + +    + +  I S+  E++ +   G++  +  +V         
Sbjct: 272 CA-FEAVTHPDDRPADAAFTARMISGEIASYQREKRYVHKAGSVVWVQVNVSLVRDAAGR 330

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +   +++T     E  L     A   A   K+ F+ ++S+E+R+P+  I+G T+LL
Sbjct: 331 PHHVVSQILDITARKEWEEVLRRATAAAEAASRAKSEFLANMSHEIRTPMNGIVGMTELL 390

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L  +Q + V  + +S+  LL ++NDILD + ++AG + L+     L D++ + 
Sbjct: 391 LETR---LTPEQRESVGLVKSSADALLTVINDILDFSKIEAGKLDLDPLPFSLRDMVGDT 447

Query: 655 KQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
            +++A + H   + +            + D  RL Q+ + ++ NA+ F+ +G   V  + 
Sbjct: 448 LKALAGRAHAKGLELACELLPDLPDVLLGDAHRLRQVLTNLVGNAIKFTDRGEVLVRCER 507

Query: 713 ARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
             ++GD     FSV + G  IP +  K+VF  F        R   G GLGL+I +  + L
Sbjct: 508 VPESGDAVVLRFSVTDTGIGIPGEKLKAVFEPFTQADGSTTRKYGGTGLGLTICQRLVGL 567

Query: 768 HGGHVSISSSDEGVTTINC 786
            GG +   S     +T + 
Sbjct: 568 MGGRLWAESESGKGSTFSF 586


>gi|262381248|ref|ZP_06074386.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296425|gb|EEY84355.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 524

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 106/536 (19%), Positives = 207/536 (38%), Gaps = 77/536 (14%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +      +   L V I ++D+   L   NR+   L+ I    +            L    
Sbjct: 11  EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGI--------NLFENP 62

Query: 364 KLPEQLNWKTWKENIF---SVYKSSETHKDTWHLPN----GQTLHVIVTSNPRGG----- 411
             PE    +  +  +      Y+      + ++  +    G  L + +   P  G     
Sbjct: 63  NFPEDKIARLKQGEMVVFDCNYEFDNIQTNEYYNIDPKKEGTNLRLSIKCVPLKGEAEDI 122

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              + MF + T +     K   L       +      +  +                   
Sbjct: 123 CGYVLMFTDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYD-----------------V 165

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           + +++     +R +        +       F  I+   D ER  +QG   +++  + EYS
Sbjct: 166 KTDKMHIDLDLRVLGNKSRLRASNLTTKKDFCEIVHPEDRERVLVQGFKRIVTGEIGEYS 225

Query: 530 II--PLPNAQTMLTF---------------------VNVTDSVRAERALTEKNE------ 560
           I    L   Q +                        +++TD +  +  L           
Sbjct: 226 IQYRQLFEGQYVWVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWVERERQRKE 285

Query: 561 ----ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                 ++A+ +K+ F+ ++S+E+R+PL  I+GF ++L  +K      ++  YV+ I  +
Sbjct: 286 YELAKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEE-EEREFYVDIIDKN 344

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S +LL L+ DILD + ++AG   +        ++  E     A K+   N+R       +
Sbjct: 345 SELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQ 403

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             +  +D +R++Q+ S  L+NA+ F+S+G  + L     N +   SV + G  I +D C+
Sbjct: 404 PVTVFSDPKRVVQVISNFLTNAIKFTSEGE-IKLAYKVSNDEIRVSVSDTGMGISDDDCR 462

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           ++F+RFV       ++G GLGL+I ++ I   GG + + S+    +T    +P KE
Sbjct: 463 TIFDRFVKL--NACKQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 516


>gi|254475748|ref|ZP_05089134.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214029991|gb|EEB70826.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 742

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 163/380 (42%), Gaps = 19/380 (5%)

Query: 421 VQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            Q++ + +   L   +   + ++ ++ V +   DGRI   N AF  +   + +       
Sbjct: 218 EQINAKLQAQQLQSERLAVVAENANDSVFLMDSDGRITWVNEAFSRITGYQYDEAIGKLP 277

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-- 537
                   +    +    D   A   +    R  ++   +      LE + +P+      
Sbjct: 278 ----GELLNGEDTDQAVIDALEAGRATGKPFRLEIRNRRKDGQLIWLETNQVPMLREDGS 333

Query: 538 ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T + + E+ L +   A  +   +K+ F+  +S+E+R+P+  +IG   +L
Sbjct: 334 VETVIAVERDMTAAKQYEQQLNDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQML 393

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + ++   L+ +Q  Y + I  S+  LL+L+ND+LDL+ +DAG + L+           + 
Sbjct: 394 ERTE---LDEEQRLYADTILGSARTLLSLINDVLDLSKMDAGEVTLSEVDFDPRACFQQT 450

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
            +    +  E  I++ +     +   +  D +RL Q+   ++ NA+ F+  G+  V + A
Sbjct: 451 LKLFEPQAQEKGIQLHLDVAEDVPQLLNGDDRRLRQVILNLVGNAVKFTDDGAVAVSVNA 510

Query: 713 --ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
              RD+    FSVK++G  I  +    +F RF        RR  G GLGL+I        
Sbjct: 511 DHTRDHVTLRFSVKDSGIGIAPEQQSRIFERFSQADAAITRRFGGTGLGLTISRLLCEAM 570

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG +++ S      T +  +
Sbjct: 571 GGDITVRSELGQGATFSAYL 590



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 12/151 (7%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           ++L     E     L+ ++L +      V+ ++ +  V+  D  G I W N ++ + T  
Sbjct: 210 VALQNKQLEQINAKLQAQQLQSE--RLAVVAENANDSVFLMDSDGRITWVNEAFSRITGY 267

Query: 229 E-GIVFQKAIGE--SRKLFKEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIVRVL- 283
           +      K  GE  + +   + +   + +  A  K F  E  +  + G     +  +V  
Sbjct: 268 QYDEAIGKLPGELLNGEDTDQAVIDALEAGRATGKPFRLEIRNRRKDGQLIWLETNQVPM 327

Query: 284 -----NSFGEAGIAIDVSKEITVNDQLTHTY 309
                +      +  D++       QL    
Sbjct: 328 LREDGSVETVIAVERDMTAAKQYEQQLNDAR 358


>gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
 gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
          Length = 1323

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 169/391 (43%), Gaps = 28/391 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N  +Q   E K     ++  E +D     +     +G     N  F  +    E+
Sbjct: 451 IQLTQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAQFLEMVGL-ES 509

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
               G   + I   C          D FA   T    ++ S    + +     +++ ++ 
Sbjct: 510 NEVIGKQPQEIFPDC--------VADCFAQAHTLLTQQQSSQNYEISMTDHKGIQHEMLV 561

Query: 533 LPNA---------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
              +           +   +++T+    E+ L E  +A     + K  F+ ++S+E+R+P
Sbjct: 562 YEASFGDRADKVNGIVGLLLDLTERKVMEQELREAKDAADAMSQAKGDFLANMSHEIRTP 621

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   L   +K   L++ Q +YV  I+ S+  LL ++N+ILD + ++AG + +   
Sbjct: 622 MNAILGMAHLALNTK---LDTTQRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERI 678

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
              L+D+L+ V   I+ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+
Sbjct: 679 DFNLDDVLDNVTAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFT 738

Query: 703 SKGSTVIL-KAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
            +G  VI  + ++ N  ++   F+VK+ G  I ++    +FN F         Q  G GL
Sbjct: 739 HQGEIVITARVSQLNDQYVTLGFAVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGL 798

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLSI +  + L GG +S+ S++   +     
Sbjct: 799 GLSISKQLVELMGGQISVRSTEGEGSIFEFS 829



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 56/156 (35%), Gaps = 16/156 (10%)

Query: 176 SELAETT-LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
           ++ AE   L  +K+     + + + D+    ++     G  L  N  + +     G+   
Sbjct: 454 TQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAQFLEMV---GLESN 510

Query: 235 KAIG-ESRKLFKEEIKKRMISSSA----LEKNFCETVSTLEH-GNNKSYKIVRVLNSF-- 286
           + IG + +++F + +      +       + +    +S  +H G      +         
Sbjct: 511 EVIGKQPQEIFPDCVADCFAQAHTLLTQQQSSQNYEISMTDHKGIQHEMLVYEASFGDRA 570

Query: 287 ----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               G  G+ +D+++   +  +L    +    ++ A
Sbjct: 571 DKVNGIVGLLLDLTERKVMEQELREAKDAADAMSQA 606


>gi|167746413|ref|ZP_02418540.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662]
 gi|167653373|gb|EDR97502.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662]
          Length = 1116

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 91/528 (17%), Positives = 202/528 (38%), Gaps = 42/528 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             +++Q  +   + + +   IA+   ++       NR  ++L +     +      D +L
Sbjct: 313 KKLSNQADYIGHLYNAVPEGIALISVDKPYRFLQLNRQGMQLLKYTEGDVE-----DTVL 367

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV---TSNPRGG-- 411
                    P+  +                T +       G+   V      +    G  
Sbjct: 368 GEPIENLIHPDDYDRLVKMIETADTDGRKSTFEFRVQRAGGEYFWVSGILERTFDENGEP 427

Query: 412 -TIWMFENLTVQVDLETKYNTLVKVQGETI-----DHLSEGVAVFGPDGRI--KLSNPAF 463
             +  F ++T +   E +    +  +  T+     +     +++   +  +      P  
Sbjct: 428 VFVAAFHDVTEEKLAEQEAEREILQERITLVGAISNAYPVIISINLTEDTLNFIYVKPGL 487

Query: 464 RSLWKTEENR------LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-QG 516
                 +++       ++   H  +      R+  E     L       F + R+ L  G
Sbjct: 488 MIGLGQQKSYSRLFQDMALTVHPEHADEFRHRFGTEYLTETLGHEKDEVFLEVRQKLTDG 547

Query: 517 TLELLSDSVLE----YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
               +S  ++     YS   L    +  T     +  +  +AL    +    A++ K  F
Sbjct: 548 RYHWISTQIINVDNPYSNDKLAILISRRTDEQRYEEEQQRQALQTALDNANAANKAKGQF 607

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+++R+P+  IIG + +   S       +  + +  I+ S   LL+L+NDILD++ 
Sbjct: 608 LSNMSHDIRTPMNAIIGMSAI--ASAHLDDRERIMECLGKINLSGKHLLSLINDILDMSK 665

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIF 691
           +++G + L      L +L+ +  + I  +     IR+KV     K  + + D  R+ Q+ 
Sbjct: 666 IESGKLSLRKEPFNLAELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVC 725

Query: 692 SKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             ILSNA+ ++ +G  + ++  +++       +FIF   + G  +     K +F+ F   
Sbjct: 726 INILSNAVKYTPEGGKIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERA 785

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +     +  G GLG++I ++ I+L  G + + SS    +     +P K
Sbjct: 786 SDSTSSKMTGTGLGMAITKNIIDLMSGDIQVESSPGKGSVFTVTLPLK 833


>gi|306840195|ref|ZP_07472975.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
 gi|306404726|gb|EFM61025.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
          Length = 769

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 221/537 (41%), Gaps = 47/537 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A    +   ++ Q+    ++ L      +  +D  R   + +RS  E+   +        
Sbjct: 228 AARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQ------ 281

Query: 351 SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---- 405
             D +L F   A  +  E  +  +  E   +   S           +G  + + V     
Sbjct: 282 --DAVLPFGDVAAIINEEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIA 339

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S      + +  +++ Q     +         E I+++SE   ++  + R+ ++N  F  
Sbjct: 340 SEGDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSE 399

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFD-----------DERKS 513
                   L PG     + A    + +      +   A   +F+           +ER++
Sbjct: 400 YAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRT 459

Query: 514 LQGTLELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             G +  +                S+  L  ++  L  A+       V +     R  + 
Sbjct: 460 QDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARK-GERDRVRELSELARKYSL 518

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISAS 616
           + E    A+  K+ F+ ++S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S
Sbjct: 519 EKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTS 578

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LLN++NDILD++ ++AG   L+   I L  L+NE  + I+ +  E NI ++   +  
Sbjct: 579 GNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDA 638

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +    ADR+ + Q+   +LSNA+ F+S G  + ++A +       ++++ G  IP+   +
Sbjct: 639 M-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALR 697

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   F    +       G GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 698 KIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 754


>gi|160901448|ref|YP_001567030.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160367032|gb|ABX38645.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1044

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 110/640 (17%), Positives = 231/640 (36%), Gaps = 46/640 (7%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
                 +++    S  + + D+    +   D  G I+  N + ++     G   Q+ +G 
Sbjct: 253 RYRQIYRQVQRSESRLRAVVDTAVDGIVMIDGRGSIVSFNGAAERLL---GWTAQEVLGR 309

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI---------------VRVLN 284
           S  L             +LEK      + L   +   + +               V +  
Sbjct: 310 SASLLMPASGCD-GEGGSLEKQLAAGFAGLLGSSRDVHALHKDGTQIAVRLAVGRVAIAG 368

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI------AIFDQNRYLQFHNRSFVEL 338
                G   D+ +   +   L  + E    L   +       ++D        +RS  EL
Sbjct: 369 DPLFVGFVTDIRERRQMLQSLRRSEEQYRTLINNVPGTTFRCLYDGKWTPLLLSRSIKEL 428

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
                       +  + L      ++L   ++    +   ++       H+D       +
Sbjct: 429 TGWTEQDFTDGLTGWDRLIHAEDRDRLEAAVSHSLSRRQTYNA-DYRLLHRDGSTRWVSE 487

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           T   +   +      W+   +  Q     + N   +     ID LS     +   G++  
Sbjct: 488 TGRGVFNEHDE--LTWIDGVIMDQTAARAR-NAEFEGTVRAID-LSLATIEYDLLGQVLR 543

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +N  F  L+    + ++   H       C   Y  +   + F   +   + +        
Sbjct: 544 ANRNFLDLFGYRLDEVAGRHH----GMFCEPGYAHTPEHEQFWRRLAEGEFQAGEFLRCG 599

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFV 573
                  ++ +  P+ +A      +     +++   +  + L    E    A   +++F+
Sbjct: 600 REGRRIWVQATYNPIRDADGRPYKIVKLLTDISAQRKLAQELVLAKEHAEAAAAARSTFL 659

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  IIGFT+ L+ +   +L   Q++Y++ +  ++  +L L+NDILD A +
Sbjct: 660 ANMSHEIRTPMNAIIGFTEALRET---ALQPTQARYLDTVHYAARSMLRLLNDILDTAKL 716

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           D G ++L      + +L  ++  S+        + +++  D     +   D  R+ QI  
Sbjct: 717 DKGAVELEIEDFSVRELCQQILASLRITADRKGLDLRLDYDPHTPAALRGDGMRVQQILV 776

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +L NA+ F+ +G  V+L+   + G     V + G  I  +    +F+ F        RR
Sbjct: 777 NLLGNAVKFTERGH-VLLRVRYEQGVLQLDVHDTGIGIAPEKIHRIFDPFAQADASTTRR 835

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLG +I      L GG + + S+    T    R+P 
Sbjct: 836 FGGTGLGTTISRQLAELMGGSIQLHSTVGVGTVFEVRLPL 875


>gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 577

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 181/458 (39%), Gaps = 48/458 (10%)

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           L    + F A   S    L  +  A ++  +L+   +K  ++ +    E+         G
Sbjct: 163 LTSFCIIFFAVYSSTKRFLRPIAEATEVLHELSHGNYKSRVYELTAPDESRDL------G 216

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           ++++++              NL      E      ++     I+++  G+ +    G + 
Sbjct: 217 KSINLLAR------------NLENASSGEAMQRARLE---SLIEYMGAGLMLIDEKGYVL 261

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L N  +R ++           +         R         +   +  +    RK     
Sbjct: 262 LVNRTYREMFNIYGQSNGQLYY---------RVLPNEKMSQVIEDVYLTEKPNRKQSSVR 312

Query: 518 LELLSDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             L S      S  P+   N +   T V   D              ++K ++++  FV +
Sbjct: 313 FGLNS-RTFMVSAAPIFGKNGRVQGTTVVFNDITE-----------IKKLEQMRKDFVAN 360

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+EL++PLT+I GF + L       +   + Q++  I   S  +  LV D+L+L+ ++ 
Sbjct: 361 VSHELKTPLTSIKGFAETLLDGAQ-DVPEIREQFLNIIHDESERMQTLVEDLLELSRLEQ 419

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
              +L  + + +  LL+E    +  K  E  + I + ++ ++    AD  RL Q+   ++
Sbjct: 420 DNYQLETTIVDVTSLLHETATLLQRKATEKQMTIHLETEEEV-FIRADLNRLKQVVVNLV 478

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRG 753
           +NA++++  G  V +         +  +K++G  I     + +F RF            G
Sbjct: 479 ANALNYTPNGGNVWISLEDGEEAVMLRIKDDGIGIHPKEMQRIFERFYRVDKARSRNSGG 538

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+IV+  I+LH G + + S +   TT   R+P K
Sbjct: 539 TGLGLAIVKHIIDLHHGTIDVESEENQGTTFTIRLPKK 576



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 17/129 (13%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           Q      ++  +   + + D+  Y+   NR++ E++ I         SN +L   +    
Sbjct: 236 QRARLESLIEYMGAGLMLIDEKGYVLLVNRTYREMFNI------YGQSNGQLYYRVLPNE 289

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFEN 418
           K+ + +      E+++   K +          N +T  V             GT  +F +
Sbjct: 290 KMSQVI------EDVYLTEKPNRKQSSVRFGLNSRTFMVSAAPIFGKNGRVQGTTVVFND 343

Query: 419 LTVQVDLET 427
           +T    LE 
Sbjct: 344 ITEIKKLEQ 352


>gi|89099083|ref|ZP_01171962.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086213|gb|EAR65335.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 590

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 167/390 (42%), Gaps = 27/390 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q+       +   +     +  +++GV  F  DG I ++NP
Sbjct: 221 ILTHDEIGELATAFNQMGRQLKFNINALSQEKEQLASILSGMADGVITFSRDGTILVTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +        G    NI A        S+   LF   + +  ++   +      +
Sbjct: 281 PAERFIQNWYY--EQGEESTNIEAV------PSEVMKLFQRAVDTGKEQIGEMP-----I 327

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              +    + PL N   +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 328 QGRIWVIIVSPLYNNTFIRGAVAVLRDMTEERQL----------DKLRKDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  + G+++ +     G+ + ++ +    I   S  +  LVN++LDLA ++AG ++L 
Sbjct: 378 TPIAMMQGYSEAIVDDIAGT-DEEKKEMASVIYDESLRMGRLVNELLDLARMEAGHIQLT 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L   ++ + +       E  I+++         FV D  R+ Q+ + ++ NA+  
Sbjct: 437 LDRVELKPYISRIARKFQGLSKEKIIKLESEFSITEDDFVFDPDRIEQVLTNLIDNAIRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           + +  +V +    +    +  V ++GS IPE+    VF RF        R   G GLGL+
Sbjct: 497 TPEDGSVKITVKSEEKGLMVEVSDSGSGIPEEDLPFVFERFYKADKARTRGRSGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ++ I+ H G +S+ S  +  TT +  IP
Sbjct: 557 IAKNIIDAHKGQISVQSKLQQGTTFSFVIP 586


>gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1199

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 119/717 (16%), Positives = 247/717 (34%), Gaps = 94/717 (13%)

Query: 158 RVSGSCAFL---RILSLDG-IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           RV  + A L   R+      +  E      +   L+   + ++ +F+     V      G
Sbjct: 202 RVVRAEAALIDRRVRERTARLEREADRQRREIADLAEREARYRGVFEHAPLGVALTTPGG 261

Query: 214 DILWANISYKKNTETEGI--VFQKAIGESRKLFKEEIKKRMI----SSSALEKNFCETVS 267
             + AN +  +         + +     + +L+ E  ++  +    + S     F  TV 
Sbjct: 262 RYIEANPALARMYGYASPRELARAVRDIAGQLYAEPGRREAMEQELADSGAVSRFEATVR 321

Query: 268 TLEH---GNNKSYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIA 320
             +       +   +  + ++ G          D S   T    L     I+   T  +A
Sbjct: 322 RRDGSLLATRR--DVRAIPDAEGNPLYYEHFVQDSSAMDTAEHSLRRYARIIAASTDMVA 379

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP--------EQLNWK 372
           +   +    F N ++V  +      +  + + D L          P        E ++++
Sbjct: 380 LVTPDGRYVFVNDAYVAAFGHAREAIVGHHATDFLDPDYFDREVAPRLASCAAGEVVHFE 439

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-------------- 418
            W E      +    H   W +  G     IV S        +  +              
Sbjct: 440 YWVELPARGRRYLSIHYSPW-VEEGSDERYIVASLRDMTDARLAVDELRESEKTTSILYR 498

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSE----GVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           ++  V  E   ++L +     +    +     +A+   +      N A           +
Sbjct: 499 VSSAVASEEHMDSLFRAVRNILAEAVDVDEFLIALVDREA--DALNHALCIGQDGPPPPI 556

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD---ERKSLQGTLELLSDSVLEYSI- 530
              +  + +       +N+     +   ++ +       R+ ++ T         E  + 
Sbjct: 557 HELS--KRLTPLTRENFNDFRETSVLVEVMRTAHPLLVTRRGMRLTGLTWPGRTPEVWLG 614

Query: 531 IPLPNAQTMLTFVNVT---------------------------DSVRAERALTEKNEALR 563
           +P+   Q +L  + V                            +  R   AL    E   
Sbjct: 615 VPIRVRQEVLGVMAVMHFADSGRYGKKEADLLLSVAEQLALGVERRRNLDALRAAKEEAD 674

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A++ K+ F+  +S+E+R+P+  I+G TD+   ++   L  +Q  Y+E +  S+  LL +
Sbjct: 675 RANQAKSRFLASMSHEIRTPMNAILGLTDVTLRTE---LTPEQRDYLETVQDSARHLLGI 731

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +NDILD + ++A  M+L      L++L   V +++        + + + I+ G       
Sbjct: 732 LNDILDFSKIEARQMELEVVDYDLHELARSVVKTLGVSARTKGLWLSLDITPGVPRHVRG 791

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCK 736
           D  ++ QI   ++ NA+ F++ G  V L+ A              +V + G  I   +  
Sbjct: 792 DPGKVRQILVNLVGNAVKFTAAGG-VSLRLAHAEAHPDTPPHLELAVADTGIGIEPSLLS 850

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++F  F    +   RR  G GLGL+I      L GG +++ S     +     IP +
Sbjct: 851 AIFESFRQADNSTARRYGGTGLGLAISREMAQLMGGDITVESVPGNGSRFVLSIPFE 907



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/295 (10%), Positives = 84/295 (28%), Gaps = 24/295 (8%)

Query: 45  IRQR-NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI 103
           +R+R   L ++ +     ++++ ++ ++Y  +      L +          I        
Sbjct: 215 VRERTARLEREADRQRREIADLAEREARYRGVFEHAP-LGVALTTPGGR-YIEANPALAR 272

Query: 104 ----DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ--SFDLVAETQNDCAIKIEG 157
                 P+     +       +    +     ++L   G    F+     ++   +    
Sbjct: 273 MYGYASPRELARAVRDIAGQLYAEPGRREAMEQELADSGAVSRFEATVRRRDGSLL-ATR 331

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
           R   +        L   +    + +       + +  +  +  +   +V      G  ++
Sbjct: 332 RDVRAIPDAEGNPLYYEH--FVQDSSAMDTAEHSLRRYARIIAASTDMVALVTPDGRYVF 389

Query: 218 ANISYKKNTETEG---IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
            N +Y           +            F  E+  R+ S +A E    E    L     
Sbjct: 390 VNDAYVAAFGHAREAIVGHHATDFLDPDYFDREVAPRLASCAAGEVVHFEYWVELPARGR 449

Query: 275 KSY------KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI---LHNLTVAIA 320
           +         +    +         D++      D+L  + +    L+ ++ A+A
Sbjct: 450 RYLSIHYSPWVEEGSDERYIVASLRDMTDARLAVDELRESEKTTSILYRVSSAVA 504


>gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
 gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
          Length = 1111

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 122/693 (17%), Positives = 255/693 (36%), Gaps = 82/693 (11%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV---WHRDQAG--DILWANISYKKN 225
             +G+  ++ +     + +      F+ LF +L   V   W  D+ G   +   N +++  
Sbjct: 425  FNGVLLDITDRREAEQAVQAERDRFETLFHNLPTPVVHGW-SDEEGHLRVQTVNDTFESV 483

Query: 226  TET--EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
                 E I  +    E      ++    +       +     V        + +++   L
Sbjct: 484  FGIGEEQIRTKDLQAEIVPPDAQDEADSIRRWLLAGEPVDREVRRETSDGTRDFRVQVTL 543

Query: 284  NSFG---EAGIAI--DVSKEITVNDQLTHTYEILHNLTVAI--AIF----DQNRYLQFHN 332
               G     G AI  D+++  T   +L     +L  L   I   ++    D++  ++F +
Sbjct: 544  RDDGPGPTEGYAIYTDITERKTKERELRTRGRLLKQLRENITDVVWMSPADKSE-IEFIS 602

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
             ++ E+W      L  +P  + ++E +  A++   Q    T +       K  + +++T+
Sbjct: 603  DAYEEIWGRPTDQLHDHP--NAVVEAIHPADRDRVQAALDTQR-------KDPDAYEETY 653

Query: 393  HL--PNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
             +  P+G    V   +    G        I +  ++T +   E                 
Sbjct: 654  RVVQPDGTVRWVRDRAAGVYGEDGRLERIIGVATDITERKRREQVLQARQDKVEALYTTT 713

Query: 444  SEGVAV--FGPDGR--IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            S+ +        GR  + L N  F         R          +   + +      +D+
Sbjct: 714  SQVLRAESTTAVGRSIVDLVNEVFGYPVVIVRFREDERLVPVQASPDVADHVPNPSSFDV 773

Query: 500  FAA--IITSFDDERKSLQGTLELLSDSV-----LEYSIIPLPNAQTMLTFVNVT------ 546
                 + T+F D   +L   L  + DSV        +++P+    T+             
Sbjct: 774  TGESVVATAFRDGATALFDDLSAVGDSVDYGAVRATAVVPIGTHGTISVAALEAGAIAGF 833

Query: 547  ----------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                            D +  E  L    E   + + +K++F+ ++S+E+R+PLT+IIGF
Sbjct: 834  DRRLIEILSTYAALVLDRIEYEGELVSAKEEAERLNRMKSAFLANMSHEIRTPLTSIIGF 893

Query: 591  TDLLKTSKLGSLNSKQS---------QYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
             +++       L    S         Q+ + I  S   LL  ++ +L+L+ ++AG M+L+
Sbjct: 894  AEVIGDEATSLLEHSDSPPDAVTALDQFADLIEESGHRLLETLDTVLNLSRLEAGEMELD 953

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             S + L D + E       +     I ++  +         D   L      ++SNA+ +
Sbjct: 954  CSPLNLADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEGGLRIALQNLISNALKY 1013

Query: 702  SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
            + +G TV ++A R   D    V++ G  +  D    +F  F   +        G GLGL+
Sbjct: 1014 TEEGGTVRVRAGRRGDDVALEVEDTGVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLA 1073

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + +  I   GG +++ ++    +    R+P+ +
Sbjct: 1074 VTKQAIEQMGGTIAVETAKGEGSCFTVRVPAAD 1106



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 136/429 (31%), Gaps = 32/429 (7%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           S + A  R++       E      + ++ S  +      F+    ++   D  G +L AN
Sbjct: 165 SDAAALARLVQAVEQTLERRRPEARPRQTSARLEAL---FEEAPDMITFHDADGQLLLAN 221

Query: 220 ISYKKNT--ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
               + T  + + +  +        L  ++ + R  + +  +++  E     + G+    
Sbjct: 222 PRLCEMTGYDADTLTRRHMWDVDVSLNPDDARARWATMAPGDQHRREGRYRRKEGSTFPV 281

Query: 278 KI----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
           ++    + V  +        D ++     + L      L  L  ++         QF+ R
Sbjct: 282 EVDLRCIAVDGARQFVATGWDTTEHRRTENALREKEARLRGLANSL----PGVTYQFYVR 337

Query: 334 SFVELWEID------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
              E W          + L  +P  D   +        PE            +       
Sbjct: 338 PGGE-WGYHFVGEKAASVLGLSPDPDGFYDRFVQC-IPPEHRERYRASTKAAAAEHRPAR 395

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            +  +  P+G  + ++ +S P           +  ++T + + E               +
Sbjct: 396 MELPFERPDGTRIWLLCSSMPERRENETLFNGVLLDITDRREAEQAVQAERDRFETLFHN 455

Query: 443 LSEGVAV--FGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           L   V       +G  R++  N  F S++   E ++        I    ++   +S    
Sbjct: 456 LPTPVVHGWSDEEGHLRVQTVNDTFESVFGIGEEQIRTKDLQAEIVPPDAQDEADSIRRW 515

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L A      +  R++  GT +      L     P P  +    + ++T+    ER L  +
Sbjct: 516 LLAGEPVDREVRRETSDGTRDFRVQVTLR-DDGPGP-TEGYAIYTDITERKTKERELRTR 573

Query: 559 NEALRKADE 567
              L++  E
Sbjct: 574 GRLLKQLRE 582



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/527 (12%), Positives = 162/527 (30%), Gaps = 63/527 (11%)

Query: 71  KYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTD-LLSFENW-----LKFHHY 124
           +  +L  E   +    D   +   ++    +  ++   D D L     W     L     
Sbjct: 196 RLEALFEEAPDMITFHDADGQL--LLAN-PRLCEMTGYDADTLTRRHMWDVDVSLNPDDA 252

Query: 125 IKLSKAT---EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
                     ++ R+EG+       T     ++++ R     A            +  E 
Sbjct: 253 RARWATMAPGDQHRREGRYRRKEGSTF---PVEVDLRCI---AVDGARQFVATGWDTTEH 306

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLV--WHRDQAGDILWAN-------ISYKKNTETEGIV 232
                 L    +  + L +SL  +   ++    G+  W          S    +      
Sbjct: 307 RRTENALREKEARLRGLANSLPGVTYQFYVRPGGE--WGYHFVGEKAASVLGLSPDPDGF 364

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-TLEHGNNKSYKIVRVL----NSFG 287
           + + +       +E  +    +++A  +     +      G         +     N   
Sbjct: 365 YDRFVQCIPPEHRERYRASTKAAAAEHRPARMELPFERPDGTRIWLLCSSMPERRENETL 424

Query: 288 EAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAI--FDQNR--YLQFHNRSFVELW 339
             G+ +D++     E  V  +      + HNL   +     D+     +Q  N +F  ++
Sbjct: 425 FNGVLLDITDRREAEQAVQAERDRFETLFHNLPTPVVHGWSDEEGHLRVQTVNDTFESVF 484

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NG 397
            I    + T     E++             + +   ++I     + E           +G
Sbjct: 485 GIGEEQIRTKDLQAEIV-----------PPDAQDEADSIRRWLLAGEPVDREVRRETSDG 533

Query: 398 -QTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
            +   V VT    G        ++ ++T +   E +  T  ++  +  +++++ V +   
Sbjct: 534 TRDFRVQVTLRDDGPGPTEGYAIYTDITERKTKERELRTRGRLLKQLRENITDVVWMSPA 593

Query: 453 D-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           D   I+  + A+  +W    ++L    +    A   +         D       ++++  
Sbjct: 594 DKSEIEFISDAYEEIWGRPTDQLHDHPNAVVEAIHPADRDRVQAALDTQRKDPDAYEETY 653

Query: 512 KSLQ--GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           + +Q  GT+  + D             + +    ++T+  R E+ L 
Sbjct: 654 RVVQPDGTVRWVRDRAAGVYGEDGRLERIIGVATDITERKRREQVLQ 700


>gi|56750891|ref|YP_171592.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81299455|ref|YP_399663.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
 gi|8953946|gb|AAF82192.1|AF258464_1 circadian input kinase [Synechococcus elongatus PCC 7942]
 gi|56685850|dbj|BAD79072.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81168336|gb|ABB56676.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
          Length = 754

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 137/286 (47%), Gaps = 7/286 (2%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           ER  LQ   E LS ++ +  +      QT      V +  +    L +     + A+  K
Sbjct: 328 ERDILQHLAEHLSIAIYQAQLYGQLQDQTQTLENRVLERTQ---ELIDALALAQAANAAK 384

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
             F+  +S+ELR+PLT +IG +  L     G L  +Q +Y++ I  S   LL L+NDILD
Sbjct: 385 GEFLATMSHELRTPLTCVIGMSSTLLRWAFGPLTERQREYIKAIHDSGEHLLELINDILD 444

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH--ENNIRIKVISDGKLGSFVADRQRL 687
           L+ ++AG   L      L+ L  +   ++  K    E  + + +  + ++  F AD +RL
Sbjct: 445 LSQIEAGKAALQVRPFSLSRLATQTLNTLQEKARLGEIQLMLDLQLNNRVDVFRADPKRL 504

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +LSNA+ F+    TV L+  R+    IF V + G  IPE     +F +F     
Sbjct: 505 RQILINLLSNAVKFTEPQGTVFLRVWREGDRAIFQVSDTGIGIPESEQAQLFQKFQQLDT 564

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               Q  G GLGL++ +  + LHGGH+ I S+    +T    IP +
Sbjct: 565 SIRRQYGGTGLGLALTKQLVELHGGHIQIESTVGQGSTFTVWIPEQ 610


>gi|298251695|ref|ZP_06975498.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546287|gb|EFH80155.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 972

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 129/789 (16%), Positives = 266/789 (33%), Gaps = 94/789 (11%)

Query: 38  IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD-GKDETPEII 96
           ++   + I  R     +                  H+L+        VW    D   +  
Sbjct: 240 LVLAGVDITTRKRAEAE-----------------LHALIDAIPQQ--VWTMRPDGYIDYS 280

Query: 97  GQ-LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
            Q       +         +   L      ++  A +  R+ G  F+     ++      
Sbjct: 281 NQRWLDYTGLSTEQAQGDGWIQCLHPDDQQRIGDAWQMSRETGTPFETEQRLRHG----- 335

Query: 156 EGRVSGSCAF--LR---ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
               +G+  +   R   +    G   +   T              +VL D++  LVW + 
Sbjct: 336 ---TTGAYHWFLARAMPMRDKTGQIIKWFGTCTDIHDKKQAEDEIRVLVDAIPHLVWIKR 392

Query: 211 QAGDILWANISYKK-----NTETEGIVFQKAIGES-RKLFKEEIKKRMISSSALEKNFCE 264
             G   +AN  ++        + +G  +  AI    ++   E  ++ + +    E     
Sbjct: 393 PDGSAEYANQRWRDYTNMTAEQAQGDGWLHAIHPDDQQRVLEGWQRSVQTGMPYEAELRM 452

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEA------GIAIDVSKEITVNDQLTHTYEILHNLTVA 318
              T   G  + + +  +L+   +       G   D+     V  QL  ++E    L   
Sbjct: 453 RHGTT--GEYRWFLVRAMLHKDAQGTPLKWFGTCTDIDDRKRVEHQLKESWENWRVLAET 510

Query: 319 IAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +  F      +  +++ ++ + +              N    +FL   +   ++     W
Sbjct: 511 VPQFVWTTQPDGSVEYWSQRWYDYTGSSPEQALGQRWN----QFLHPDD---DESTLTIW 563

Query: 375 KENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNP---RGGTIW----MFENLTVQVD 424
           +       ++ E+++  + L  GQT      +    P     G I        ++  Q  
Sbjct: 564 RH----ALEAGESYEIEYRLKEGQTGEYRWFLTRGMPVRDETGQILKWFGTCTDIEDQKR 619

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           +ET      +     ++    G+ V   + +I  +N AF  +       L    H+  + 
Sbjct: 620 IETALRQSQERASILMNSNIIGINVIEGE-QIVDANDAFLHMTGYTREDLRA-RHMNWLH 677

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
            T   Y + +       A   S        +        S L   +  +         ++
Sbjct: 678 MTAPEYLDRTCEAHQELAAQQSL----TPYEKEYVCKDGSRLPVLVGGVALEHHPRQAIS 733

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                 A + L          ++ K++F+   S+ELR+PL  +     LL          
Sbjct: 734 YVLDNSARKEL----------EQRKDAFISMASHELRNPLAALKLQATLLHRQLARQGLE 783

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             +  +  +      +  LV ++LD++ + AG ++     + L+ LL EV  ++      
Sbjct: 784 ASAPALSRMQTQINTVTRLVEELLDVSKIQAGRLEYIREAVNLDALLREVADTMQQI--- 840

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
                 V+      S V D+ RL Q+F+ +LSNA+ +S    TV ++ +         V+
Sbjct: 841 KTTHTVVVRGATFCSLVGDKDRLGQVFTNLLSNAIKYSPDARTVEMELSATEDAVTVRVR 900

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  IP++    +F RF       Q    G+G+GL IV   +  HGG +++ S+    +
Sbjct: 901 DHGLGIPQEQRDKIFERFYRAVGPRQPTIPGLGMGLYIVAEIVKGHGGTITVDSAAGKGS 960

Query: 783 TINCRIPSK 791
           T    +P +
Sbjct: 961 TFTVTLPKR 969



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/393 (13%), Positives = 131/393 (33%), Gaps = 36/393 (9%)

Query: 182 TLKCKKL-SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
           T + K+L          + ++L   ++  D A  I++AN S +  T   G+  +  +G S
Sbjct: 4   TRQIKRLTPESHETLLTILEALPGALFVLDDASTIIYANASAQALT---GVAPETLVGNS 60

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLE---HGNNKSYKIVRVLNSFGEA----GIAI 293
                 ++    +  +  +      ++ ++           +     + G       +  
Sbjct: 61  FWRCAPQLVSTALYQAIQKTKQTRALTEVQYVSPVTGSWLHVHLSPTAGGLTLQFHEMEA 120

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
              ++  V+ + + + ++L N+   IA    +  +   N   ++   I    +  NP  +
Sbjct: 121 PAHRQEIVHQRGSLSMDVLKNMRAGIAFLTPDGIVLDLNEVLLDDAHIRREEVVGNPLVE 180

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
                   A++   +             +++    ++   L    +L V +T +      
Sbjct: 181 GPWCSSSPASQAQLRAAIARASMGETVRFETLVHPREGMEL----SLDVAITPHSDAEHH 236

Query: 410 -GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               +    ++T +   E + + L       ID + + V    PDG I  SN  +     
Sbjct: 237 IEYLVLAGVDITTRKRAEAELHAL-------IDAIPQQVWTMRPDGYIDYSNQRWLDYTG 289

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
               +      I+ +     +     D W +     T F+ E++   GT    +      
Sbjct: 290 LSTEQAQGDGWIQCLHPDDQQRI--GDAWQMSRETGTPFETEQRLRHGT--TGAYHWFLA 345

Query: 529 SIIPLPNA-----QTMLTFVNVTDSVRAERALT 556
             +P+ +      +   T  ++ D  +AE  + 
Sbjct: 346 RAMPMRDKTGQIIKWFGTCTDIHDKKQAEDEIR 378


>gi|262195026|ref|YP_003266235.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078373|gb|ACY14342.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 965

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 128/649 (19%), Positives = 255/649 (39%), Gaps = 74/649 (11%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ELAE             +   +FD+L   ++ +D+ G  L AN S     E  G   ++ 
Sbjct: 83  ELAEKQRAEAAERARAELLATIFDALPLNIFLKDEDGRFLEANRS---TCEVVGKRREEV 139

Query: 237 IGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI---------------V 280
           +G +   +F   + KR+  +  L  +    V   E    ++                   
Sbjct: 140 LGSTDYDIFPAALAKRLREADRLALDENRIVVEDERLRRRTGDAQEKLYYAAKLPMTRPS 199

Query: 281 RVLNSFGEAGIAIDVSKEI--TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
             +        + +  +     +  +      +L  L+  I + D++  + F N++   +
Sbjct: 200 DGVRCLLGVSFSFEWREREIDELVKRHEFVQRVLDQLSQPICVKDRSGRVLFSNKAADAV 259

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            +                +    +++LP                           LP G 
Sbjct: 260 TQFTGEASEDERERRVFDDLDELSSELPLP-------------------------LPGGG 294

Query: 399 TLHVIVTSNP------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           T  + V   P         ++ + +++  +  LE +      +    ID   + V V   
Sbjct: 295 TRWLRVRRMPLSIGDNEVYSLSIGDDIDDRKQLEQQLEDAAFMMQTVIDASPDCVIVKDL 354

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +GR+   N AF         +L   +    +    +    E +       ++      R 
Sbjct: 355 EGRVLYVNEAFAREVSVPRAKLVGLSAFDVLPRARAAAQVERERM-----VVEGGVQVRT 409

Query: 513 SLQGTLELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            +    +     + E   +P+ +     +  +    ++TD  ++ERAL+  ++    A  
Sbjct: 410 EVARPRDARGKVIYELFELPMRDRSGALSGLISIGRDITDWKQSERALSLAHQQAEAARL 469

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K  F+ ++S+E+R+PL+ IIG T LL+T++   L+++Q+ YV  + AS + LLNL+ND+
Sbjct: 470 AKTEFLANISHEVRTPLSGIIGMTSLLRTTE---LDAEQADYVATVEASGSTLLNLINDL 526

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
           LD++ ++AG + L+     L   +            E  + + + I++G     + D  R
Sbjct: 527 LDISRLEAGRIALDEQMFELMPCVTHTVNLARPMAREKGLALDLDIAEGVPAFVLGDELR 586

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           L Q+ S +++NA+ F+ +G  V++K +      D     F+V + G  IPED  + +F R
Sbjct: 587 LSQVLSNLVTNALKFTEQG-RVLVKVSPCGYEDDRIRLRFAVHDTGIGIPEDKREVLFER 645

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F        RR  G GLGL+I +  +N  GG + + S +   +  +  +
Sbjct: 646 FTQVDTSTTRRYGGAGLGLAISQHLVNAMGGRIELQSREGEGSCFSFAL 694



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 99/307 (32%), Gaps = 40/307 (13%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T      ++   +R L   G   +A     E     +      I   L + I + D++  
Sbjct: 62  TRADAEREADPELRTLL-LGIVELAEKQRAEAAERARAELLATIFDALPLNIFLKDEDGR 120

Query: 328 LQFHNRSFVELWEIDLAFLATNPSND----ELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
               NRS  E+       +  +   D     L + LR A++L    N    ++      +
Sbjct: 121 FLEANRSTCEVVGKRREEVLGSTDYDIFPAALAKRLREADRLALDENRIVVEDERLRR-R 179

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ---GETI 440
           + +  +  ++        + +T    G    +  + + +   E + + LVK        +
Sbjct: 180 TGDAQEKLYYAA-----KLPMTRPSDGVRCLLGVSFSFEWR-EREIDELVKRHEFVQRVL 233

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D LS+ + V    GR+  SN A                     A   +++  E+   +  
Sbjct: 234 DQLSQPICVKDRSGRVLFSNKA---------------------ADAVTQFTGEASEDERE 272

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALT 556
             +    D+    L   L       L    +PL        ++    ++ D  + E+ L 
Sbjct: 273 RRVFDDLDELSSELPLPLPGGGTRWLRVRRMPLSIGDNEVYSLSIGDDIDDRKQLEQQLE 332

Query: 557 EKNEALR 563
           +    ++
Sbjct: 333 DAAFMMQ 339


>gi|319784548|ref|YP_004144024.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170436|gb|ADV13974.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 773

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 105/485 (21%), Positives = 198/485 (40%), Gaps = 37/485 (7%)

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             L   P    L          PE  +       I +               +GQ + + 
Sbjct: 281 DMLGYKPCETMLSFGEVDQIIHPEDGDLFELANRIVAREIDHIDQVFRMRHADGQWVWMR 340

Query: 404 VTS------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
             +       P    I +  ++T Q  L  +           I++++E   ++     + 
Sbjct: 341 ARAQVIDPEAPEIQLIGIAVDVTEQRHLALRSEAADLRLRTAIENINESFVLWDSTQHLI 400

Query: 458 LSNPAFRSLWKTEENRLSPGT-----HIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           + N  ++      +  + PGT       R +A    R    + G    A       D R 
Sbjct: 401 MCNSKYQQDNGLSDRDVMPGTARAALEERMLAFASERRLAHTSGLQGGATFERQLADGRW 460

Query: 513 SLQGTLELLSDSVL----EYSIIPLPNAQTMLTFVNVTDSVR------------------ 550
                L+     ++    + + I L   + + +   +  ++                   
Sbjct: 461 LQVNELKTRDGGIVSVGSDITQIKLHQEKLVDSERRLMATIHDLSLARRAEEERSRELVD 520

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
             R   ++ E    A+  K+ F+ ++S+ELR+PL  IIGF++L++    G L + +  +Y
Sbjct: 521 LNRKYMKETERAEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSERYEEY 580

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I++S   LL ++NDILD++ ++AG   L+   I L  L++E  + ++ +  +  I +
Sbjct: 581 ATDINSSGKYLLGVINDILDMSKIEAGQFSLDREEIDLGPLISETVRVVSLQAAQKAISV 640

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +      L + VADR+ + QI   +LSNA+ F+  G  + ++A   +G  + ++++NG  
Sbjct: 641 ETRIADAL-TLVADRRAIKQIVINLLSNAVKFTGHGGHISVRARNTSGALVLTIEDNGCG 699

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    +   F  V N       G GLGL+I  S   L GG + I SS+   T ++ R
Sbjct: 700 IPKEALGKLGRPFEQVQNQFSKSHAGSGLGLAISRSLAELQGGALKIRSSEGVGTIVSVR 759

Query: 788 IPSKE 792
           IP K+
Sbjct: 760 IPVKK 764


>gi|229010880|ref|ZP_04168077.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
 gi|228750554|gb|EEM00383.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
          Length = 591

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 168/367 (45%), Gaps = 29/367 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP      +  +        +  I    
Sbjct: 249 ALQQEKEQLASILSSMADGVVTLNQEGEVVVINPPAEHFLQVWQEE----KEVELIKKL- 303

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 304 -----PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++ V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N    F V+++G
Sbjct: 463 QLTVDFQSPIEQYTFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + IPE+    +F+RF        R    G GLGL+I ++ +  H G +S+SS     TT 
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTF 582

Query: 785 NCRIPSK 791
           +  +P++
Sbjct: 583 SVYLPNR 589


>gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 599

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 163/375 (43%), Gaps = 18/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           TV +      + L   +   +D + + + V     RI   NPA +++     + L  G  
Sbjct: 222 TVAMQRYRALDLLPAARERIVDQMPDAIIVLDMHDRIIDLNPAAQAILSATTDVL--GKS 279

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN---A 536
           +  +A              L   +   ++ + +  Q      +   L  + +   +   A
Sbjct: 280 LARVAPPW-----------LIEQVRDRYEGQFEVQQTGETGTTTYDLRCTTLRDRDGSPA 328

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    ++T   +A +AL E  EA   A + K++F+  +S+ELR+PLT I+G+++ L+ 
Sbjct: 329 GRIFVLRDITLFKQAAQALQEAKEAAEAASQAKSAFLSMMSHELRTPLTAILGYSEFLRE 388

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L       +  ++ I  +   LL L+NDILD A ++A  + ++   + ++ L+NEV  
Sbjct: 389 DLLNRDLHSLTSDLDRIITAGRHLLTLINDILDYARLEANAVTIHPEPVHMSTLINEVVM 448

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++     +    I V  +  L   +AD  RL Q+   ++ NA  F+ +G   +       
Sbjct: 449 TLQGLAKQGQNTITVTVEPDLPPVLADPVRLRQVLLNLVGNACKFTGQGEIRVHCYRSTT 508

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
            +    V + G  I  D  + +F  FV   +    +  G GLGL+I +    + GG + +
Sbjct: 509 AEIQIDVSDTGIGIAADQLQHLFKPFVQVDNGPTRRYGGTGLGLAICQRLCQVMGGAILV 568

Query: 775 SSSDEGVTTINCRIP 789
           +S     +T + R+P
Sbjct: 569 TSEPGRGSTFSVRLP 583


>gi|91216331|ref|ZP_01253298.1| sensory box histidine kinase/response regulator [Psychroflexus
           torquis ATCC 700755]
 gi|91185469|gb|EAS71845.1| sensory box histidine kinase/response regulator [Psychroflexus
           torquis ATCC 700755]
          Length = 1325

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 118/530 (22%), Positives = 212/530 (40%), Gaps = 47/530 (8%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI----FDQNRYLQFHNRSFVELWEID 342
           G  G   D++       +L      L+N+  A  +    ++        N  FVE+    
Sbjct: 400 GLYGTFQDITDIKNTKIKLKKERSRLNNIIDATNLGTWEWNVQTGEALFNNRFVEMLGYT 459

Query: 343 LAFLATNPSND------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
              +  + S D        ++   S   L E  + K+    +    K    H   W L  
Sbjct: 460 TKEMTLSNSIDVWNNATHPIDLPESDKALQEHFDGKSDFYKMDLRLKHKLGHW-IWVLDK 518

Query: 397 GQTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-P 452
           G+ +       P     WMF    ++T +  LE      V+      +    G+ +    
Sbjct: 519 GKVISWTEDGQPE----WMFGTHHDITDKKVLEKDLKKNVQQFKNIFELSPVGIIITDFK 574

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            G     N A + +    ++ +     I +I         E +  +     I +  D +K
Sbjct: 575 SGNFLDVNKAMQDMVGYTKDEILDMN-IWSIT-------PEKEVVEKDRQAIQNLKDLKK 626

Query: 513 --SLQGTLELLSDSVLEYSIIPL------PNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
              L+  L+  +   ++  I  L       N   + T  ++T+  R E+ L +      K
Sbjct: 627 IGPLEKVLKAKTGEFIKVMINGLIHFNEDGNRIVISTIQDITEQKRFEKKLEKSKVEAIK 686

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K+ FV ++S+E+R+PL  +IGF+DLL  +    LN  Q +Y++ +  S+  LL+L+
Sbjct: 687 ASQAKSEFVANMSHEIRTPLNGVIGFSDLLMKT---PLNEVQHKYMKTVFQSANTLLDLI 743

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
           ND+L+ + +++G ++L+     L  L+NEV        H+  +   ++ + K+      D
Sbjct: 744 NDVLNFSKIESGKLQLDIEKTSLIKLVNEVVDLTKYDAHKKGLEFVLVIEDKIPDYIWID 803

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSV 738
             RL QI   ++SNA+ F+ +G  V LK    N         FSV++ G  I +   K +
Sbjct: 804 GVRLKQILMNLISNAIKFTHRG-YVKLKVHFKNKTNNLTTISFSVEDKGIGIAKGNQKKI 862

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           FN F+        +  G GLGLSI    + L    + + S     +    
Sbjct: 863 FNAFIQEDASVTKKYGGTGLGLSISGKILGLMNSKLKLKSQLGIGSEFYF 912


>gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
 gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
          Length = 743

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 160/385 (41%), Gaps = 20/385 (5%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +L  Q     ++    ++      + ++ V +   +GRI  +N +F        +     
Sbjct: 213 DLIEQGRDLLRHQKEAQLLSLVARNANDSVILADSEGRIVWTNESFTRTTGYSLDEAKGR 272

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                     +    + +  +  A  + +    R  +    +   +  +E +++P+ +  
Sbjct: 273 YP----GELLNGDKTDLEVSNAIADAVEAGRPFRTEILNVTKDGREIWMETNLVPVLDRN 328

Query: 538 -----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                T+    +VT +      L     A  +    K  F+  +S+E+R+P+  ++G  +
Sbjct: 329 GKVEVTVAIERDVTAAKAQAEELAAARVAAEEGARAKAEFLATMSHEIRTPMNGVVGMAE 388

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +K   L+ +Q QYV+ I +SST LL ++NDIL+L+ +DA  M+L+         + 
Sbjct: 389 LLSETK---LSIEQRQYVDTIRSSSTALLAIINDILELSRLDARKMELHPVNFDPVSCVR 445

Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +  + +  +     +R+ + +          D  RL Q+   +L NA+ F+ +G  V L+
Sbjct: 446 DTMRLLKPQAQAKGLRLSLETGADVPPLVYGDDGRLRQVLINLLGNAIKFTERGG-VTLR 504

Query: 712 AARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
              +  D        V++ G  I  +  + VF RF        R   G GLGL+I    +
Sbjct: 505 LRSEAQDPGYLLTLEVEDTGIGIAAEKIERVFERFSQADADTTRLYGGTGLGLTISRELV 564

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L GG +++ S+    +     +P 
Sbjct: 565 ALMGGRITVDSTLGQGSCFTLCLPL 589



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 37/239 (15%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
                    +L E      +      +  ++  + +  V   D  G I+W N S+   T 
Sbjct: 204 FRQHRRTTLDLIEQGRDLLRHQKEAQLLSLVARNANDSVILADSEGRIVWTNESF---TR 260

Query: 228 TEGIVFQKAIGE-SRKLFKE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSY---K 278
           T G    +A G    +L        E+   +  +    + F   +  +     + +    
Sbjct: 261 TTGYSLDEAKGRYPGELLNGDKTDLEVSNAIADAVEAGRPFRTEILNVTKDGREIWMETN 320

Query: 279 IVRVLNSFG----EAGIAIDVSKEITVNDQLTHTY-----------EILHNLT------- 316
           +V VL+  G       I  DV+      ++L               E L  ++       
Sbjct: 321 LVPVLDRNGKVEVTVAIERDVTAAKAQAEELAAARVAAEEGARAKAEFLATMSHEIRTPM 380

Query: 317 ---VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
              V +A       L    R +V+        L    ++   L  L +       +N+ 
Sbjct: 381 NGVVGMAELLSETKLSIEQRQYVDTIRSSSTALLAIINDILELSRLDARKMELHPVNFD 439


>gi|270294471|ref|ZP_06200673.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270275938|gb|EFA21798.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 927

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 124/664 (18%), Positives = 249/664 (37%), Gaps = 66/664 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA------NI 220
              SL  + S   E      +     +    LF  +          G +  +      + 
Sbjct: 287 WFSSLANVISICIELRKTKDEAVRERTFLSNLFRYMPL--------GYVRMSIVCDEKDN 338

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK-- 278
            Y         +F   +G+    F  +        +A    +   +  +  G +K     
Sbjct: 339 PYGYYVTDANSIFADFLGKPASTFIGKTASSFSREAAPRLEYL--LEIVNTGTHKEMDMC 396

Query: 279 ----------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQ 324
                     ++          + +D +  +  +  L H+ +    I  N+   + I+D+
Sbjct: 397 FELTNKHCHVVIYSPEKNEVVALFLDTTDSVQTHLALDHSEKLFKNIFANIPAGVEIYDK 456

Query: 325 NRYLQFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           + +L   N   +E++        I +        + +L E +++ + +  +LN+    + 
Sbjct: 457 DGFLVDINNKDMEIFGVRDKQDVIGVNLFENPNVSAQLAERIQTEDMVDFRLNYA--FDR 514

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
               Y +S+  KD  HL    +       N  G  +   +N T ++D  ++         
Sbjct: 515 TEGYYSTSKQPKDVIHLYTKVSKVYDSKGNFTGYAMINIDN-TERIDAMSRICDFENFFL 573

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY--NESD 495
              D+   G A      R   +   +      +EN     T + ++    S+ Y  +   
Sbjct: 574 LISDYAKVGYAKLNLLDRKGYAIKQWYKNMGEDEN-----TQLADVVGIYSKMYPSDRRR 628

Query: 496 GWDLFAAIITS--------FDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--MLTFVNV 545
             D F+                ER   +G    +  +V+  ++    N Q   +    ++
Sbjct: 629 MLDFFSKARVGEAKHFQGEMRIERPGEKGKWNWVRTNVV-VNLFEPENGQIELIGVNYDI 687

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+    E  L E  E    AD +K++F+ ++S+E+R+PL  I+GF+ L+  +       +
Sbjct: 688 TELKETEAMLIEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSSLMGETGDM---EE 744

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + QY+  I  ++ +LL L++DILDL+ ++AG        + +N L  ++ + +  K    
Sbjct: 745 KRQYMAIIEENNDLLLQLISDILDLSKIEAGTFDFVEKELDVNMLCEDIVRFMKMKAKP- 803

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + +           V+DR RL Q+ +  ++NA+ F++ GS  +     D     F V +
Sbjct: 804 GVEVLFDRHLPECRIVSDRNRLNQVIANFVNNAIKFTTAGSIRVGYNKVDETHLRFYVAD 863

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  I  +M   +F+RF+         G GLGLSI +S I   GG + + S     +   
Sbjct: 864 TGLGIEPEMQAQIFDRFIKLNTFVH--GTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFW 921

Query: 786 CRIP 789
             +P
Sbjct: 922 FVLP 925


>gi|171914280|ref|ZP_02929750.1| sensory transduction histidine kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 742

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 116/649 (17%), Positives = 227/649 (34%), Gaps = 45/649 (6%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TE 227
               +         +L  + ++ + + D  +  +      G I   N+  ++       E
Sbjct: 108 AAARDTTRFKQLEDELRANSALQRAMLDGANLAIISCRPDGIIQGFNVGAEQLLGYKTAE 167

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC--------------ETVSTLEHGN 273
             G        + +++ +            +E  F               E     + G+
Sbjct: 168 VIGKNSPSIFHDPQEIARRAAFLTQELGYPVEVGFQTFVAKALLGPPDENEWTYIRKDGS 227

Query: 274 NKSYKIV------RVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFD 323
                +           + G  GIA D++ +   +            IL N T  + + D
Sbjct: 228 RIPVMLTVTIMRDDSGQTTGYLGIASDLTAKRQADRAQLELEARLQAILDNTTAVVFLKD 287

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKENIFSVY 382
           +    Q  NR F EL+ +    +A     D    EF R+        + K        V 
Sbjct: 288 REGNYQTVNRRFEELFHLTREQMAGKNDYDIFPPEFARAFR----DNDAKVLATGQAMVL 343

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +    H    H        V+ + N       +  ++T +   E +           ++ 
Sbjct: 344 EEIAPHAGVAHTYVSVKFPVLDSENQIIALGGIATDITDRKRAEMELRDREARLSSILET 403

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             E +      G I+  NPA   ++  +   +  G +I  I    +         ++  A
Sbjct: 404 AVEAIVTMDEKGLIQSINPAAAEIFGYQRGEI-IGRNISVIVPAPNLLSPSLTSQNVPPA 462

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             T    + + L G  +  S   L  S+        ++    + D    +R      E L
Sbjct: 463 PDTERAGQSRELLGRRKDGSIVPLILSVSQTHTGNRVIYTAIMHDITMRKR----FEEDL 518

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R++++    F    S++L+ PL  I  +  LL+    G LN +  Q++      +  + N
Sbjct: 519 RRSNKELEQFAYIASHDLQEPLRMITSYLQLLERRYKGELNEEAGQFIATAVDGAARMRN 578

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ D+L  + V  G      + +    L+  V   +   + E +  I V +   L + VA
Sbjct: 579 LIQDLLSYSRV--GTQGRELAPVSCGQLIQSVLGDLEVSIKECSAVITVET---LPTIVA 633

Query: 683 DRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  +L Q+F  ++ NA+ F S +   + + A    G+++ S+++NG  I     + +F  
Sbjct: 634 DELQLRQVFQNLIGNALKFRSEQTPRIHISAQPCRGEWVISIRDNGIGIEPKFFERIFVI 693

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F     R Q  G G+GL++ +  +  H G + + SS     T    +PS
Sbjct: 694 FQRLHAREQYPGTGIGLALCKRIVERHHGQIWVDSSTGKGATFFFSLPS 742


>gi|254467050|ref|ZP_05080461.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
 gi|206687958|gb|EDZ48440.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
          Length = 764

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 183/449 (40%), Gaps = 30/449 (6%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSS--------ETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           A+KL E+   +   E +  + ++           H        GQT   + T       +
Sbjct: 4   ADKLSEERRARLAAERLLELKQAELSAANRKLGRHALALTKQIGQTQAEVATVRDENAKV 63

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
                 +       K  T  +    +I    +G A F  D  +  +N A+ +++   E  
Sbjct: 64  -----KSDLHTANEKIETAERRLWHSIQAFQDGFAFFDADSNLIGANTAYINIFDGLEEV 118

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER----KSLQGTLELLSDSVLEYS 529
               +++R +          + G    A    +  +ER          ++L  +  L   
Sbjct: 119 APGISYMRILQLLTDEGLINTGGMAPNAW--RAMMNERWLSPAPEPVVVQLWDERYLRLI 176

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                +   +   +++T +VR E  L         A+  K++F+ ++S+E+R+P+  ++G
Sbjct: 177 DQRGHDGDMVTLALDITSTVRYEEELRAARARAEAANRAKSAFLANMSHEIRTPMNGVVG 236

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +LL  ++   L+ +Q  Y   I  S   LL ++ND+LD + ++A  ++L+     L  
Sbjct: 237 MAELLCDTE---LDEEQRLYASTIKNSGEALLVIINDVLDYSKIEADKLELHPEPFDLER 293

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST- 707
            L+EV   +     +  I + V  D  L + F  D  R+ Q+ + +  NA+ F+ +G   
Sbjct: 294 CLHEVVMLLQPTARDKGIALLVDYDLFLPTRFTGDPGRIRQVLTNLAGNAVKFTKEGHVT 353

Query: 708 --VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
             V    + D+       ++++ G  IP++    +F  F  V +    Q  G GLGL+I 
Sbjct: 354 LRVTGITSPDDKQCAVHVNIEDTGIGIPQEKISHIFGEFNQVEDERNRQFEGTGLGLAIS 413

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  I + GG + + S +   +    R+P 
Sbjct: 414 KRLIEMMGGEIWVDSEEGKGSCFGFRLPL 442



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            K  T   +L H+ +         A FD +  L   N +++ +++  L  +A   S   +
Sbjct: 72  EKIETAERRLWHSIQAFQ---DGFAFFDADSNLIGANTAYINIFD-GLEEVAPGISYMRI 127

Query: 356 LEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L+ L     +    +    W+  +   + S         L + + L +I      G  + 
Sbjct: 128 LQLLTDEGLINTGGMAPNAWRAMMNERWLSPAPEPVVVQLWDERYLRLIDQRGHDGDMVT 187

Query: 415 MFENLTVQVDL 425
           +  ++T  V  
Sbjct: 188 LALDITSTVRY 198


>gi|327189034|gb|EGE56220.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CNPAF512]
          Length = 802

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 109/683 (15%), Positives = 230/683 (33%), Gaps = 69/683 (10%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           VS +    RI     + +  A    + ++L   ++            V   D+ G +L +
Sbjct: 123 VSAAELVARIKRHIELGAAQAHLRRRNEQLDTALASMG-------QGVCLFDEDGRLLLS 175

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N  Y +    +  V          L        + ++S  +       + +        K
Sbjct: 176 NNRYAEVYGLDPAVIHPGQSLEDILKLRADVGAVPATSTSDYLAWAVATNMGDAPQDWIK 235

Query: 279 ----------IVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEI------------- 311
                       +     G      D++     E  + +                     
Sbjct: 236 ELKTGQIIRGYHQRTPEGGWVSTHEDITQAWFAEKALAEAHAQAERAEQEARAAHARLLA 295

Query: 312 -LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
               +   + +FD        NR + +L+      L      ++ L       + PE + 
Sbjct: 296 AFEVVPEGLVLFDAEDRFVLWNRRYEQLYAESGDMLVKGMRFEDRLRTGLECGQYPEAVG 355

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
            +         + +  T K    LP  + + +       GG++ +  ++T     E  + 
Sbjct: 356 REQEWLEERLAHHAEPTSKHEQRLPGNRWIRIEERRISEGGSVGIRVDITDLKMQEASFR 415

Query: 431 TLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA---- 485
            L        +     + V+  +  +    N A    +     +    T +R+I A    
Sbjct: 416 LL-------FEGNPMPMWVYDRETLKFLHVNQAAIDHYGYRLEQFLTMT-LRDIQAPQDA 467

Query: 486 ----------------TCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVL 526
                           TCS  + ++DG  +   + ++  + +    SL   +++      
Sbjct: 468 DRATAAVFDAEDPAATTCSFRHLKADGGAIEVTVYSTCLNHKGKAASLMAVVDVTEAKRA 527

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E +++   +    +      +  R    L    E  ++ +E++  FV   S+E R+PL  
Sbjct: 528 EKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSMASHEFRTPLAV 587

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G    L   K  +     ++  + I +S + +L L+  IL    +D G + +      
Sbjct: 588 IDGAAQRLIRRKEAATPEFLAEKADQIRSSVSRMLELMESILAAGRLDHGRITIVPKPCS 647

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + +++        +    +   +K+  D    +   DR  L Q+FS + SNA+ ++    
Sbjct: 648 IAEIIETCSARQESIRRSHRFLLKL--DELPETIYGDRPALDQVFSNLFSNAVKYAPDSP 705

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            V +   ++      +V++ G  I  D    +F R+          G G+GL++V+  + 
Sbjct: 706 NVHVSGWQEGERVCITVRDEGIGIDADDLPKMFQRYFRARSSTGIAGTGIGLNLVKQIVE 765

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           LHGG + ++SS    TT   RIP
Sbjct: 766 LHGGTIDVASSRGNGTTFTLRIP 788


>gi|294678968|ref|YP_003579583.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
 gi|294477788|gb|ADE87176.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
          Length = 743

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 96/450 (21%), Positives = 189/450 (42%), Gaps = 22/450 (4%)

Query: 357 EFLR-SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              R +A +L EQ   + +  N      +    +      +G    +   ++ +G    +
Sbjct: 13  RRARLAAERLLEQKKRELFAANQKLALHARALSEQIVQQRHGLQQALTEAASLKGENSRV 72

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +L      E+      +   + ++ + +G AV+  D R+ ++N A+ S +   E  ++
Sbjct: 73  RGDL---QRAESVAMIAQRRLWDALETIRDGFAVYDGDLRLVVANRAYLSFFHG-EVAIT 128

Query: 476 PGTHIRNIAATCSRY----YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
            G     +    +++        D  D    +I     E       L   +   ++    
Sbjct: 129 AGVTYDAVLKIVAKHEMVDMAGRDPLDWHHEMIARIRREHIE-PIVLRTRNGHHIKLIDR 187

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              +   +    ++T  +  E+ L E       A+  K++F+ ++S+E+R+P+  ++G  
Sbjct: 188 WGEDGDLVCLAQDITHIIEREQELEEARNKAEAANRAKSAFLANMSHEIRTPMNGVVGMA 247

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL  ++   LN +Q  YVE I +S   LL ++ND+LD + ++A  +KL      L   L
Sbjct: 248 ELLGETE---LNEEQQLYVETIRSSGEALLTIINDVLDYSKIEAERLKLYPEVFDLERCL 304

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS---- 706
           +E+   +     +  +++ V  D  L + F+AD  R+ QI + +L NA+ F+  G     
Sbjct: 305 HEIMVLLQPSAKDKGVKLLVDYDLFLPTRFIADPGRMRQILTNLLGNAVKFTHTGHVLAR 364

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
            V  +   ++ +   +V++ G  I  D    VF  F        RR  G GLGL+I    
Sbjct: 365 VVGFERDAEHYELHVTVEDTGIGISPDNLDHVFGEFNQVEATSNRRFEGTGLGLAITRQL 424

Query: 765 INLHGGHVSISSSDEGVTT--INCRIPSKE 792
           ++L GG V + S     +       +P  E
Sbjct: 425 VHLMGGSVWVDSQLGEGSCFGFRVTLPRAE 454



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 70/220 (31%), Gaps = 4/220 (1%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK--IVR 281
                E +  ++    + +   E+ K+ + +++         +S          +  +  
Sbjct: 2   DAVLAEKLAQERRARLAAERLLEQKKRELFAANQKLALHARALSEQIVQQRHGLQQALTE 61

Query: 282 VLNSFGEAGIAI-DVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
             +  GE      D+ +  +V        ++ L  +    A++D +  L   NR+++  +
Sbjct: 62  AASLKGENSRVRGDLQRAESVAMIAQRRLWDALETIRDGFAVYDGDLRLVVANRAYLSFF 121

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
             ++A  A    +  L    +         +   W   + +  +            NG  
Sbjct: 122 HGEVAITAGVTYDAVLKIVAKHEMVDMAGRDPLDWHHEMIARIRREHIEPIVLRTRNGHH 181

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           + +I      G  + + +++T  ++ E +           
Sbjct: 182 IKLIDRWGEDGDLVCLAQDITHIIEREQELEEARNKAEAA 221


>gi|283851902|ref|ZP_06369178.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
 gi|283572626|gb|EFC20610.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
          Length = 1507

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 104/512 (20%), Positives = 201/512 (39%), Gaps = 37/512 (7%)

Query: 293  IDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            +DV+  +    +L+   E L  L             +  +    RS  +   I  A L  
Sbjct: 864  MDVTSAVAAEKRLSQQTEELETLYKTIPDIYFKVAPDGTILNC-RSTHQPDIIPDATLVA 922

Query: 349  NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSN 407
                 E+          PE     T +E +    ++        H + +G   H+ V   
Sbjct: 923  GKHFSEIFG--------PEHG--ATLEEALQEAREADAQRSLDLHFVAHGNNRHLEVRIV 972

Query: 408  PRGGTIWM-FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            P     ++   ++T     E +       Q + +  +S+ +      G I L NP    +
Sbjct: 973  PVAAETFVVMRDMTGLKQAEDRLR----FQADVLSQVSDALIAVDEAGSIILWNPGAERI 1028

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNES--DGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             +    R + G  +           +++  D  +     I  FD  R      +   S S
Sbjct: 1029 LEIPAER-AMGQPLEAFTGIKWIMADDAAADRPEDRQLWIKEFDHARADGSHIVVESSVS 1087

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            VL            +    +V+D+ R  + L E  +   +A+  K+ F+ ++S+E+R+P+
Sbjct: 1088 VL--RDTRGNRIGLLAILRDVSDNKRFAKELLEAKQKAERANRTKSEFLANMSHEIRTPM 1145

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              I+G T L        L     ++++ +  S   LL+++NDILDL+ ++AG + L    
Sbjct: 1146 NGILGMTQLALNR---DLPDDVREFLQLVHQSGQSLLDIINDILDLSKIEAGRVVLEQKP 1202

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              L +++    + +     +  +     I+ G     + D+ RL QI + ++ NA+ F+ 
Sbjct: 1203 FDLVEMVESTLKPLGLLARDKGLTFLFSIAPGVPDRVIGDKGRLRQILTNMVGNAIKFTK 1262

Query: 704  KGST---VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
            +G     V L   ++ G    +F +K+ G  I      S+F +F   A     Q  G GL
Sbjct: 1263 RGRVEVKVRLAEIQEPGRASLLFLIKDEGIGISSAQIHSIFEKFEQIASSAHVQYGGTGL 1322

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GL+I ++ + + GG + + S     +T +  +
Sbjct: 1323 GLAISKALVEMMGGVIQVESELHRGSTFSFVL 1354



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 96/285 (33%), Gaps = 22/285 (7%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----KNTETEGI 231
            ++       K+LS      + L+ ++  + +     G IL    +++       T   G 
Sbjct: 865  DVTSAVAAEKRLSQQTEELETLYKTIPDIYFKVAPDGTILNCRSTHQPDIIPDATLVAGK 924

Query: 232  VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
             F +  G         +++ +  +   +      +  + HGNN+  ++  V  +     +
Sbjct: 925  HFSEIFGPE---HGATLEEALQEAREADAQRSLDLHFVAHGNNRHLEVRIVPVAAETFVV 981

Query: 292  AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP- 350
              D++      D+L    ++L  ++ A+   D+   +   N     + EI        P 
Sbjct: 982  MRDMTGLKQAEDRLRFQADVLSQVSDALIAVDEAGSIILWNPGAERILEIPAERAMGQPL 1041

Query: 351  -SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             +   +   +          + + W +  F   ++  +H             +  T   R
Sbjct: 1042 EAFTGIKWIMADDAAADRPEDRQLWIKE-FDHARADGSHIVV----ESSVSVLRDTRGNR 1096

Query: 410  GGTIWMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
             G + +  +++         ++ + K     + + E + ++S  +
Sbjct: 1097 IGLLAILRDVSDNKRFAKELLEAKQKAERANRTKSEFLANMSHEI 1141


>gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
 gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
          Length = 1522

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 120/653 (18%), Positives = 235/653 (35%), Gaps = 67/653 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
              +  + ++  +    ++  +    V   D    I+W N  +++ T   G    +A G+
Sbjct: 365 RAEMLARNMTADLERLALVAKNTSNAVIITDVNRKIVWVNEGFERIT---GYSRAEAFGK 421

Query: 240 SRKLF------KEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIV------RVLNSF 286
           S           + +  +M ++    ++F  E V+  + G     ++             
Sbjct: 422 SPGKLLQCKDTDQAVASKMRTALDAGESFKGEIVNRDKSGREYWIELEIQPRYNDQNEPI 481

Query: 287 GEAGIAIDVSKEITVNDQL-------THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           G   I  D+S+      +L             L NL   I+  D    +   N +F  + 
Sbjct: 482 GFMAIESDISERKATYQRLEAALRENNALLSTL-NLHGIISTADSTGTITDVNNAFCNIS 540

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 L            L  ++    +     W +    +    E         +G  
Sbjct: 541 GYRREELIGQTY------RLVDSHTHSAEFWQSMWNDIASGISWRGEICNKA---KDGSL 591

Query: 400 LHVIVTSNPRGGTIWMFE-------NLTVQVDLETKYNTLVKVQGETID---------HL 443
             V  T  P   +    E       ++T   + +              D         ++
Sbjct: 592 YWVDTTIAPFNNSAGQIERYISIQVDITANKEQQASLIIAKNQLVRAADVAELGIWTLNV 651

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           S+G   F        S P                 H  +I+          +   ++  I
Sbjct: 652 SDGSLSFDDRMNDIYSLPESLRNTPIPLTYWYSLLHPEDISEVKKAIETALENVSVYRQI 711

Query: 504 ITSF-DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
              F  ++   +Q T  +  D   +  ++       M    ++T    AE  L    E  
Sbjct: 712 FRIFVKNQVHFIQSTGTVERDENGKAMLM-------MGINRDITQQREAENILKTARETA 764

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A++ K++F+ ++S+ELR+P+  I+G   LL+ +    L+ KQ+ Y      ++  LL 
Sbjct: 765 EEANKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLDRKQADYAAKSETATRTLLR 821

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+NDILD + +++G M L      ++ +L ++   +++ +    + +    D  L  FV 
Sbjct: 822 LLNDILDFSKIESGKMALECIPFDIHVMLRDLAVILSSNLKATKVEVLFDIDPSLPQFVE 881

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL QI + +  NA+ F+ +G  V    ++  +R      F V++ G  I  +  K+
Sbjct: 882 GDSMRLQQILTNLGGNALKFTEQGEVVLFIKVIDRSRHQVRLQFGVRDTGIGIAPENQKT 941

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F+ F        RR  G GLGL I + F+ L GG +++ S     +  +  I
Sbjct: 942 IFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGELTLESQLGKGSLFHFTI 994


>gi|16329802|ref|NP_440530.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652287|dbj|BAA17210.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 974

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 105/515 (20%), Positives = 209/515 (40%), Gaps = 49/515 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ------FHNRSFVELWEIDLAFLATNPSN 352
             +++ +   +E L +L     ++ Q+ YLQ      + N   + + +++ A        
Sbjct: 473 EFIHESVAQMWEPLKDLQNNFPLW-QDTYLQENEGGRYRNHESLAVGDVETAGFTD-CHL 530

Query: 353 DELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
           D L  F +R+   +P  +  + W   +   Y++       W       LH I      G 
Sbjct: 531 DNLRRFEIRAFLTVPVFVGEQLW--GLLGAYQNGAPRH--WQAREIHLLHQIANQL--GV 584

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            ++  + L    +        +      +D+L++G+ V    GRI   NPA  +++  E 
Sbjct: 585 AVYQAQLLARFQEQSKTMENTLADLTAIVDNLADGLLVIDLFGRITRYNPALLAMFDLEG 644

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L        + A    Y+ E+    L   +     +E+K +   +EL      +  I 
Sbjct: 645 LEL--------LGAGVDAYFPET----LNQLLAKPEREEQKLVTADVELSQGRQGQALIT 692

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            + + +    +     +V   R +T + E     + +K  F+  VS+ELR+PLT+I+GF 
Sbjct: 693 SITSHENGCEYPQCLGAVIMIRDVTHEREV----ERMKTDFLATVSHELRTPLTSILGFA 748

Query: 592 DLLKTS--------------KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +++                 LG    +  + +  I + +  L  L+ND+LD+A ++AG 
Sbjct: 749 TVIQDKLNRVIIPELDLAQPHLGKATERVMRNLAIIESEAQRLTVLINDVLDIAKMEAGQ 808

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
                    +  ++     +I  +  + NI ++   +  L  F+ D  R+LQ+   +LSN
Sbjct: 809 ESWQEQPCAIGPIIERAIATITPQAQKKNISLQGDLEPGLPDFIGDENRILQVVLNLLSN 868

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGV 754
           A+ F+ KG  +  ++          + ++G  I     + +F  F          + +G 
Sbjct: 869 AVKFTPKG-LITARSHFHQNYLWVEIIDHGPGIHPADQEKIFEPFQQGGGDVLTDKPQGT 927

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL I +  +  HGG + ++SS    +T    +P
Sbjct: 928 GLGLPICKKIVEHHGGTIGVNSSLGRGSTFYFSLP 962



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 87/248 (35%), Gaps = 38/248 (15%)

Query: 203 DFLVWH-----RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           +F +W       ++ G   + N       + E   F     ++ + F  EI+  +     
Sbjct: 492 NFPLWQDTYLQENEGGR--YRNHESLAVGDVETAGFTDCHLDNLRRF--EIRAFLTVPVF 547

Query: 258 LEKNFCETVSTLEHGNNKSYK------IVRVLNSFGEAGI-----AIDVSKEITVNDQLT 306
           + +     +   ++G  + ++      + ++ N  G A       A    +  T+ + L 
Sbjct: 548 VGEQLWGLLGAYQNGAPRHWQAREIHLLHQIANQLGVAVYQAQLLARFQEQSKTMENTLA 607

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               I+ NL   + + D    +  +N + + +++++   L     +    E L      P
Sbjct: 608 DLTAIVDNLADGLLVIDLFGRITRYNPALLAMFDLEGLELLGAGVDAYFPETLNQLLAKP 667

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENL 419
           E+   K    ++           +      GQ L   +TS+  G       G + M  ++
Sbjct: 668 EREEQKLVTADV-----------ELSQGRQGQALITSITSHENGCEYPQCLGAVIMIRDV 716

Query: 420 TVQVDLET 427
           T + ++E 
Sbjct: 717 THEREVER 724


>gi|87309249|ref|ZP_01091385.1| PAS protein [Blastopirellula marina DSM 3645]
 gi|87287888|gb|EAQ79786.1| PAS protein [Blastopirellula marina DSM 3645]
          Length = 1309

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 120/688 (17%), Positives = 247/688 (35%), Gaps = 50/688 (7%)

Query: 140  SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI----SVF 195
            +F        D  + + G  +      R L      S+     L  +++         + 
Sbjct: 491  AFAGYPLIVADRLVGVMGIFARQALSERTLHAMNSVSKEIALGLLNRQIMQEEREHRELL 550

Query: 196  KVLFDSLDFLVWHRDQAGDILWANISYK--------KNTETEGIVFQKAIGESRKLFKEE 247
            ++   S+   V   + AG + + N   +                     + ES +L  E 
Sbjct: 551  RITLASIGDAVISTNAAGRVTFLNPVAESLTGWSQQDAIGCPLPEVFSIVNESTRLPVEN 610

Query: 248  IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--NSFGEAGIAI----DVSKEITV 301
              ++ +    +      TV   + G  +          N+ GE   A+    D+S    +
Sbjct: 611  PAEKALREGKIVGLANHTVLIAKTGTERFIDDSAAPIRNAEGEIVGAVLVFRDISDRRAI 670

Query: 302  NDQLTHTYE----ILHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
              +     E    + + +         IFD             +  E++ AF       +
Sbjct: 671  ESESRLHEERYRTLFNTIDEGFCVVEMIFDAAGK-----PVDYQFLELNPAFEKQTGLTN 725

Query: 354  ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRG- 410
             + E +R      E+     W E    V ++ E+ +         G+   V         
Sbjct: 726  AIGERMRELAPDHEEK----WFEIYGQVAQTGESTRFVHQAKALEGRWFDVYAFRVGGES 781

Query: 411  --GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLW 467
                  +F ++T +   E       +     ++ + +  + +  P GR    N     + 
Sbjct: 782  SQRVALLFTDITQRRKTEQDRRDSEERFRTLVEQVQDYAIFMTDPQGRATSWNEGVERVL 841

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              +E        +  I          +      AA + S  D+R  L+        + + 
Sbjct: 842  GFDELEFIGQDIVSLIFTPEDVVSGIAQAELDQAAAVGSASDDRWMLRKDGTRFWAAGVT 901

Query: 528  YSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
              ++   N     M    + T+  R E  L +    L ++D  K  F+  + +ELR+PL 
Sbjct: 902  TGLLDENNKLLGFMKVMRDQTERKRLEDELRQVAADLSESDRRKTEFLATLGHELRNPLA 961

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVE-YISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I    +++K  K    + +  + V   +   +  ++ L++D+LD++ + +G ++L    
Sbjct: 962  PIRTGLEMMKMVKN---DPELIENVRGTMERQTQQMVRLIDDLLDVSRITSGKIELRTCQ 1018

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            I LN+++    ++    + E    ++V          AD  RL Q+FS +L+N+  ++  
Sbjct: 1019 ITLNEVIRSAVEATQPFIDEAGHTLQVTLPETPIVLDADPNRLAQVFSNLLNNSSKYTPD 1078

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
            G  + L A  +NG  I ++K++G  IP D    +F  F       +    G+G+GL++V+
Sbjct: 1079 GGHIWLAAQCENGKAIVTIKDDGLGIPLDQQSQIFEMFAQIDRPLEMGYTGLGIGLTLVK 1138

Query: 763  SFINLHGGHVSISSSD-EGVTTINCRIP 789
              + LHGG + + S   +  +    R+P
Sbjct: 1139 QLVELHGGTIDVQSEGADQGSEFFVRLP 1166



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 86/297 (28%), Gaps = 21/297 (7%)

Query: 151 CAIKIEGRVSGSCAFLR--ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
             +   G+V      LR  I       S L E      K    +     L DS D     
Sbjct: 106 PYLDSIGKVEFEIVHLRSLIQDDAEQQSRLIEVEQDVTKKLAELQETINLLDSGD----- 160

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           R  A  ++        +++    + +K       +   E ++    +   E +F   ++T
Sbjct: 161 RTAALQVV--------DSDRGIALMEKVRESIATMQLSEHEQLRTRAQESESSFRTAITT 212

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
           +         +V  +    +  +         + +Q       L ++  A+   D    +
Sbjct: 213 ILLSALVGIALVCAVYYLLQRNLRQKEKAAAILAEQKERLRITLASIGDAVISTDVAGNV 272

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI---FSVYKSS 385
            + N    +L           P          +  ++ E    K  +E      + +   
Sbjct: 273 TYLNTIAEKLTNWKDDDAIGQPLTTVFHIVNETTRQIVENPALKALREGAIVGLANHTIL 332

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE---TKYNTLVKVQGET 439
                  H  +     +        G++ +F +++ +   E    +   L+++  E 
Sbjct: 333 IAKDGAEHFIDDSAAPIRDRHGKIAGSVLIFRDISERRQSEIALEEKRRLLQLGAEI 389


>gi|150008173|ref|YP_001302916.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|149936597|gb|ABR43294.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
          Length = 522

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 108/529 (20%), Positives = 216/529 (40%), Gaps = 63/529 (11%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-----LATNPSNDE-LLE 357
           +      +   L V I ++D+   L   NR+   L+ I         L  NP+  E  + 
Sbjct: 9   EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGINLFENPNFPEDKIA 68

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNPRGGTIWMF 416
            L+    +    N++ +     + Y + +  K+  +L  + + + +   +    G + MF
Sbjct: 69  RLKQGEMVVFDCNYE-FDNIQTNEYYNIDPKKEGINLRLSIKCVPLKGEAEDICGYVLMF 127

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            + T +     K   L       +      +  +                   + +++  
Sbjct: 128 TDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYD-----------------VKTDKMHI 170

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII--PLP 534
              +R +        +       F  I+   D ER  +QG  ++++  + EYSI    L 
Sbjct: 171 DLDLRVLGNKSRLRASNLTTKKDFCEIVHPEDRERVLVQGFEKIVTGEIGEYSIQYRQLF 230

Query: 535 NAQTMLTF---------------------VNVTDSVRAERALTEKNE----------ALR 563
             Q +                        +++TD +  +  L                 +
Sbjct: 231 EGQYVWVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAK 290

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K+ F+ ++S+E+R+PL  I+GF ++L  +K      ++  YV+ I  +S +LL L
Sbjct: 291 EANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEE-EEREFYVDIIDKNSELLLQL 349

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + DILD + ++AG   +        ++  E     A K+   N+R       +  +  +D
Sbjct: 350 IEDILDFSKIEAGTFDITKKNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQPVTVFSD 408

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +R++Q+ S  L+NA+ F+S+G  + L     N +   SV + G  I +D C+++F+RFV
Sbjct: 409 PKRVIQVISNFLTNAIKFTSEGE-IKLAYKVSNDEIRVSVSDTGMGISDDDCRTIFDRFV 467

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                  ++G GLGL+I ++ I   GG + + S+    +T    +P KE
Sbjct: 468 KL--NACKQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 514


>gi|300855156|ref|YP_003780140.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300435271|gb|ADK15038.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 592

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 162/391 (41%), Gaps = 15/391 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + E +T +   E       +    +I+     V ++  DG +   N  +  +     +
Sbjct: 174 ITLEEEITERTKTEEALRESERKFRYSIEEAPVPVMLYTQDGEVLKINRTWSYITGYTID 233

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS------DSVL 526
            +   + +  I+        +      F+    S +   K+  G + +          + 
Sbjct: 234 DIPTTSKLAEISDVFKEDIYKLSN---FSEKQNSGEYSVKTKHGNIRIWDFYLACIGKLT 290

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +   + +  A  +     +    +       +   ++K D +K  F  ++S+ELR+P+  
Sbjct: 291 DKRNMLIAVAVDVTEKRCMEQLQKNIEKERIRLSEIKKYDRMKTDFFANISHELRTPINL 350

Query: 587 IIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           I     +    LK     +  S + +Y++ +  +   LL LVN+++D+  +D+G   ++ 
Sbjct: 351 IFSAIQVYKLKLKECICENSCSDRYKYIKIMEQNCYRLLRLVNNLIDITKIDSGYFNIDE 410

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               +  L+ +   SIA  +    + I   +D +      D + + +I   +LSNA+ F+
Sbjct: 411 VNYNIVSLVEDTTLSIADYIKSKGLSIVFDTDVEEKIIACDPEEIERILLNLLSNAIKFT 470

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
            +G  +++     N      VK+ G  IP++   S+F RFV        +  G G+GLS+
Sbjct: 471 PRGGNIMVNVEDGNKSISIKVKDTGKGIPKEKLNSIFERFVQVDKSLARENEGSGIGLSL 530

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           V++ + LHGG +S+ S +   +     IP K
Sbjct: 531 VKALVELHGGTISVKSKEGYGSEFIIHIPCK 561


>gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1511

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 117/660 (17%), Positives = 230/660 (34%), Gaps = 72/660 (10%)

Query: 194  VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK------AIGESRKLFKEE 247
               V  +     V   D+   I W N  +++ T+      ++      A G + +   +E
Sbjct: 350  TLGVAMEVSPLAVVVTDRKTRIRWVNPQFERVTQYSLAEVKRRDPNVLASGATPREVYDE 409

Query: 248  IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITV 301
            +++ + +       F   V+  + G++   ++     +       G  G+  DVS+   +
Sbjct: 410  MRRSLRAGQPWSGEF---VNRRKDGSHYHARVAISPVNDDKGNLLGYVGLQEDVSEYKRL 466

Query: 302  NDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLA------------- 344
              ++     +   LT   A F    D +R         V    +  A             
Sbjct: 467  LSRMESQLRLEAGLTHFAASFKNEFDPDRLAALALNELVRFLSLPYAAVHVRCRESSAQV 526

Query: 345  ---FLATNPSNDELLEFLR-------SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
               F    P  D++    R       ++ +     +         +   +  T      L
Sbjct: 527  LARFGGDRPPGDDISGACRPLVDDVIASGRPFSLRDLPETASVALAGGAAGLTEIRLLPL 586

Query: 395  PNGQT------------------LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
             +GQ+                   ++          + +  ++  +V  +         Q
Sbjct: 587  GDGQSAVGALEIGLLRELSEADQRYLDKARAELALALKLALDIGERVRAQQALADQNAFQ 646

Query: 437  GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT--HIRNIAATCSRYYNES 494
               +D +   V   G D R    N A+   +      L       +  +       Y   
Sbjct: 647  QVLLDTIPNPVFYKGADTRFLGFNRAYEETFGVRREELVGKRVLDLDYLPEADRLAYQRE 706

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            D   + A      +       G +      V  +          + TFV++++    ERA
Sbjct: 707  DEEAIAAGGSVRREMRIPFADGAMHETLYYVSGFRRADGSPGGLVGTFVDISEQKAVERA 766

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L    EA  +A  +K+ F+ ++S+E+R+P+  I+G + L  T++   L  +Q  Y+  I 
Sbjct: 767  LAAAKEAAVEATLLKSDFLANMSHEIRTPMNAIVGLSHLALTTE---LTPRQRDYMGKIQ 823

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +S  LL ++NDILD + ++AG + +  +   L+ +L  V   I  K     + +     
Sbjct: 824  QASQHLLGIINDILDFSKIEAGKLSIERTDFDLSAVLENVAALIREKAEAKGLELLFDVA 883

Query: 675  GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSS 729
              +    V D  RL QI     +NA+ F+  G   + ++   ++G      F V++ G  
Sbjct: 884  ADVPQDLVGDPLRLGQILVNYANNAVKFTEAGEVGIRVRLIAEDGGEAVLRFEVRDTGIG 943

Query: 730  IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            + ++    +F  F        RR  G GLGL+I +    L  G V + S+    +T    
Sbjct: 944  LTQEQIARLFQSFSQADASTTRRFGGTGLGLAISKRLAELMRGEVGVDSTPGAGSTFWFT 1003



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 11/136 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++ E     + L++  +  +VL D++   V+++      L  N +Y++            
Sbjct: 628 DIGERVRAQQALADQNAFQQVLLDTIPNPVFYKGADTRFLGFNRAYEETFGVRREELVGK 687

Query: 237 IGESRKLFKEEI-----KKRMISSSALEKNFCETVSTLEHG--NNKSYKIVRVL----NS 285
                    E       ++   + +A      E       G  +   Y +        + 
Sbjct: 688 RVLDLDYLPEADRLAYQREDEEAIAAGGSVRREMRIPFADGAMHETLYYVSGFRRADGSP 747

Query: 286 FGEAGIAIDVSKEITV 301
            G  G  +D+S++  V
Sbjct: 748 GGLVGTFVDISEQKAV 763


>gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1364

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 105/623 (16%), Positives = 219/623 (35%), Gaps = 79/623 (12%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y+  T       +  +     ++          +++   +  +    L  G         
Sbjct: 269 YRSGTPAIDSALRPPVVTLLPMYGRTWVITARPTASFIASLNQNSPWLIGG--LVMAGSV 326

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +  +      +  + +E  +  Q+     ++ + + AI     +  +   N +   ++  
Sbjct: 327 LFAALLALYFSNGLRREEVLRKQME-LAALVSHSSEAIVAETPDGRITLWNPAAEAMFGY 385

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                      D  +     A  +PE        ++  +   ++ +   T H  +G  +H
Sbjct: 386 TAE---EAIDQDLTMLLAPQAYAMPE-------IDHADAALAANASAAQTMHHRDGHQVH 435

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVK------------------VQ 436
           V+ + +P         G    F +++ +V    +   L                    +Q
Sbjct: 436 VLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNASLEHQVAERTGELVKFSVLQ 495

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYY 491
              + H    +      G + L NPA   +       +                  +R  
Sbjct: 496 RAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARML 555

Query: 492 NESDGWDLFAAIIT------------------SFDDERKSLQGTLELLSDSVLEYSIIPL 533
            +  G  +   +                    S D  R  +  TL  L D   +      
Sbjct: 556 ADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVI---- 611

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +   V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   L
Sbjct: 612 ---GYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYL 668

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ S+   L       V  I  S+  LL ++NDILD + ++AG + L  +   LN L + 
Sbjct: 669 LQRSE---LPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725

Query: 654 VKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           + + + + +    + + V          + D  R+ Q+   ++ NA+ F+ +G  V+   
Sbjct: 726 IAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVR 785

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
              +GD      +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I
Sbjct: 786 RFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLI 845

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
            L GG + + S     +     I
Sbjct: 846 ELMGGELEVESVPGRGSEFYFVI 868



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 91/304 (29%), Gaps = 50/304 (16%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L+ +++         L       +      G I   N + +      G   ++AI +   
Sbjct: 340 LRREEVLRKQMELAALVSHSSEAIVAETPDGRITLWNPAAEAMF---GYTAEEAIDQDLT 396

Query: 243 LFKEEIK---KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GEAGI 291
           +           +  + A          T+ H +     ++   +          G +  
Sbjct: 397 MLLAPQAYAMPEIDHADAALAANASAAQTMHHRDGHQVHVLASKSPIIESEGTLSGHSHF 456

Query: 292 AIDVSKEITVNDQ---LTHTYE-------------------ILHNLTVAIAIFDQNRYLQ 329
             D+S  +  + +   L  + E                   IL +   AI   D + ++ 
Sbjct: 457 FRDISDRVRSHQRSIDLNASLEHQVAERTGELVKFSVLQRAILAHAGYAIIATDSSGFVT 516

Query: 330 FHNRSFVELWEIDLAFLATNPS------NDELLEFLRS-ANKLPEQLNWKTWKENIFSVY 382
             N +  ++   + A +            DEL E  R  A++    +          +  
Sbjct: 517 LFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLEAIAALTSL 576

Query: 383 KSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             S+T + T+   +G+ L V++T        +   G + +  +LT Q   E +    +  
Sbjct: 577 GRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDA 636

Query: 436 QGET 439
               
Sbjct: 637 AKSA 640


>gi|329910831|ref|ZP_08275387.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546070|gb|EGF31141.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1228

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 113/603 (18%), Positives = 230/603 (38%), Gaps = 45/603 (7%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
            AG ++W             +   + I  S        +      +A +      V  LE
Sbjct: 227 AAGLLVW-----FVLAGALALSLGRRIAWSMTALTSPAR----DLAAGKALAVPRVYFLE 277

Query: 271 HGN--NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
            G     + +    L     A  A++   E  + ++     ++           D    +
Sbjct: 278 AGEVARATLRSSMELRFSELALKALNHDLEARIQERTREATDLYERGPCGYHTLDATGIV 337

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              N++ ++L   +          +E L         P+       +          +  
Sbjct: 338 IQVNQTELDLLGYE---------REEYLGHAIRQFMTPDSGATTADRFLQLRHGGQLQDL 388

Query: 389 KDTWHLPNGQTLHVIVTSN----PRGGTIWM---FENLTVQVDLETKYNTLVKVQGETID 441
           +  +   +G  +  ++++N     RG   ++     +  +    + +  +L +   E ++
Sbjct: 389 EVDFVHKDGTVVSCLISANVELDSRGHFAFLRSTLVDNRIGKARQQQIASLNEFLNEVLE 448

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDL 499
            L  GVAV     ++ L N  F SL     +            +  +  + +     +D 
Sbjct: 449 SLPFGVAVLNGQQQVILRNRLFGSLQGYPPDLFQKSPLMFAEMVRFSYEQGHYPQRSYDD 508

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             A   +    R+S++    L  +  LE    P+     +LT+ ++T   RAE+AL++  
Sbjct: 509 VLAEYLAMIGSRQSVRIERSLPGNQYLEIRGQPISADWILLTYTDITAFRRAEQALSQAR 568

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                A+  K+ F+ ++++ELR+PL  +IG   LL  S    LN+ Q  Y + I+ S+  
Sbjct: 569 TEAETANLAKSDFLANMTHELRTPLNAVIGLARLLTES---PLNAWQRDYADKIALSAQS 625

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           L  L+NDILDL+ ++A  +++      LN LL      +   + +  I + +     +  
Sbjct: 626 LQVLINDILDLSKMEANQLRIEQIPFSLNLLLRTAASVLGVGVGQKAIAVVLDLAPDVPD 685

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------FIFSVKNNGSS 729
           + V D  R+ QI   ++SNA+ F+ +G  +++     +              +V++ G  
Sbjct: 686 ALVGDPLRVQQILLNLISNALKFTERGE-IVVSVRCQSMMPVAAGAPILLQIAVRDTGIG 744

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I     +++FN F+       R   G GLGL+I    + + GG +S+ S+    +     
Sbjct: 745 IAVAALETIFNAFIQADASTSRLYGGTGLGLTISNRLVTMMGGQISVDSTPGQGSEFRFS 804

Query: 788 IPS 790
           +P 
Sbjct: 805 LPL 807


>gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 864

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 100/407 (24%), Positives = 173/407 (42%), Gaps = 35/407 (8%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR---IKLSNPAFR--SLWKT 469
           +  N   Q +L+      ++   +       G  +   D     + LS+PA R   + + 
Sbjct: 35  IHTNTRDQANLDQILRRSLEYLNQVFHFTQMGFLLVNEDDSSFDLVLSHPASRSAEIQRA 94

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWD--LFAAIITSFDDERKSLQG----------- 516
            +  +  G     I         ESD  D      ++T+ +  R    G           
Sbjct: 95  LDIIIENGEFAWAINQNRPVVVGESDTADSAQILHVLTTRNRVRGMFYGLRQGSMHRTSV 154

Query: 517 -TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS-----VRAERALTEKNEALRKADEIKN 570
            T+ELLS  +L  +   L +A+         +       +    L    +    A+  K+
Sbjct: 155 ATMELLS-IILTSTAYALESAELYRLLSQDNERLQKLVEKRTAELERARDQAEGANRAKS 213

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+ELR+PL+ IIG  DLL  ++   L+++Q +Y    S S+  LL L+NDILD 
Sbjct: 214 QFLANMSHELRTPLSGIIGMVDLLLDTR---LDNEQQEYARLASDSAHALLALINDILDF 270

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG +++  +   L  L   V +  A    +  I +    D +L ++V  D  RL Q
Sbjct: 271 SKIEAGKLEIEEAEFSLGSLTEGVTELFALAAQKKGIVLTSYVDPQLPAYVRGDALRLRQ 330

Query: 690 IFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           + + +LSNA+ F+ KGS  + +K   D G      F V + G  +  ++ + +F  F   
Sbjct: 331 VLANLLSNALKFTEKGSVQLQVKILGDGGQAPLIRFEVCDTGIGVDAEVAERLFQSFTQA 390

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                R   G GLGL+I  + + L GG + I S     +T    +P 
Sbjct: 391 DSSTTRKYGGTGLGLAICRNLVELMGGEIGIESRLGQGSTFWFTLPL 437


>gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1210

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 102/514 (19%), Positives = 190/514 (36%), Gaps = 36/514 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E  +      T  I+     A+   D+   +   N    +++           +  E 
Sbjct: 380 HAEGALRKSEGRTRLIIDTALSAVIGMDERGLIIGWNTQAEQIFGW---------TRQEA 430

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSE------THKDTWHLPNGQTLHVIVTSNP- 408
           L    +   +P   + +T +  +    K+ +        + T    +G    V +   P 
Sbjct: 431 LGRAMTDTLIP-PAHRETHQRGLERFLKTGDGPILNKRIEVTALRRDGTEFPVELAITPL 489

Query: 409 RGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           R    + F     +++ + + E    T       T+     G+  +         +  ++
Sbjct: 490 RIENAYTFTAFVVDISERKEAEEALRTSEARLTMTVQGSHIGIWDWNLTTGAIYFSSQWK 549

Query: 465 SLWKTEENRL-SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELL 521
           +    ++  L +     R       + + +           + F+ E +     G+   +
Sbjct: 550 NQLGYDDTTLPNSFDEWRTRIHPDDQPFVQETIQACLDGQRSQFELEHRLRHRDGSYRWI 609

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                    +    A+ +   ++ TD  R E  L    EA   A + K+ F+ ++S+E+R
Sbjct: 610 LSRGSLIRDLYGVTARMVGIHIDTTDRKRTEEELRSAKEAAEAASKAKSEFLANMSHEIR 669

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  ++G T+LL  S   +L  KQ      +  S   LL ++NDILD + ++AG + L 
Sbjct: 670 TPMNGVLGTTELLLNS---ALTDKQRHLASTVHRSGRTLLAIINDILDFSKIEAGKLDLE 726

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                L  +L E  +          +R+ + I+D        D  R  QI   +LSNAM 
Sbjct: 727 CVDFDLLPVLEESLELFGEAARRKQLRLSQHIADAVPRYLKGDPVRFRQILMNLLSNAMK 786

Query: 701 FSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
           F+  G  V L A    G        F+V + G  IP      +F+ F        RR  G
Sbjct: 787 FTETGG-VSLSAEYVEGTTTQALLRFAVTDTGIGIPPAAKSRIFDAFSQADGSTTRRYGG 845

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            GLGLSI +  + L GG +++ S+    +T    
Sbjct: 846 TGLGLSIAKQLVGLMGGTITVESTPGSGSTFAFT 879



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  +  +      +L ++   + + D +  +   N     LW +    +     +D +
Sbjct: 68  TSESQLAGERDKLQTVLRSIGDGLCVVDGHWNIVLLNPEGERLWGLTEKEVVGRRLHDMI 127

Query: 356 LEFLRSANKLPEQLNWK-----TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              L    KL E +  +     T +   F       T       P    L  IV  N   
Sbjct: 128 --SLSYGTKLTEPIFTQILLDDTAQGGSFRTDDGLLTSITGRSFPVSCVLAPIVQENRSA 185

Query: 411 GTIWMFENLTVQVDLETKYN---TLVKVQGETI 440
           G + +F ++  +   E       +L++ Q  T+
Sbjct: 186 GAVLVFRDIMERKQTEDIRRHTESLLRRQQTTL 218



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 3/150 (2%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++  E             ID     V      G I   N     ++             
Sbjct: 377 ERLHAEGALRKSEGRTRLIIDTALSAVIGMDERGLIIGWNTQAEQIFGWTRQEALGRAMT 436

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQT 538
             +     R  ++               ++R  +       ++  +E +I PL   NA T
Sbjct: 437 DTLIPPAHRETHQRGLERFLKTGDGPILNKRIEVTALRRDGTEFPVELAITPLRIENAYT 496

Query: 539 MLTF-VNVTDSVRAERALTEKNEALRKADE 567
              F V++++   AE AL      L    +
Sbjct: 497 FTAFVVDISERKEAEEALRTSEARLTMTVQ 526


>gi|153007303|ref|YP_001381628.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030876|gb|ABS28644.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 464

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 4/254 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +  +     R L +    L++ D +K++F+  +S+ELR+PLT++IG+++++     G
Sbjct: 192 VQESYRELQEKNRELEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGG 251

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q +Y+  I      LL L+  ILD++ ++AG ++L  S +    ++ +   ++  
Sbjct: 252 PLTAEQREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSDVDATQIMRDAIATVLP 311

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-F 719
              +  +++   + G +    ADR +L Q    + SNA+ F+  G T+ + A    GD  
Sbjct: 312 LARKKGLKVACDA-GAMPRVQADRDKLRQCLVNLCSNAVKFTPAGGTIAVSAEALPGDRL 370

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I E+    VF+ F        R   G GLGL+IV+SF+  HGG V + S 
Sbjct: 371 AIHVADTGIGIGEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEVGVRSI 430

Query: 778 DEGVTTINCRIPSK 791
               TT    +P +
Sbjct: 431 PGVGTTFTVILPLR 444


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 15/371 (4%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +  +E             +D   + +     + +I L N     ++      +      
Sbjct: 985  ERQRIEEALRISQVRLARILDIADDAIISINGNQQITLFNQGAEKIFGYSAEEIIGQRLD 1044

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              I    ++ + +       A  +     ER+ + G  +  ++   E SI      + + 
Sbjct: 1045 TLIPQRFTQTHRQHVADFGQAPSLARRMGERREIFGCRQDGTEFPAEASISKFQLDKEVF 1104

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              V + D    ++            + +K+ FV  VS+ELR+PLT+I G   +L +  L 
Sbjct: 1105 YTVILRDVTERKQ-----------IERMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLS 1153

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            + + +  + +E  + S+  L+ L+NDILD+  +++G +K+   +  L+DL+      +  
Sbjct: 1154 ADSEQGKRLLEIATDSTERLVRLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQP 1213

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              ++  +++ V S         D  R++Q  + +LSNA+ FS+   TV L A     + +
Sbjct: 1214 LANKAGVKLSVSSPS--IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQHYGDELL 1271

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             +VK+NG  IP D   S+F RF        R   G GLGL+I +S I  HGG +   S  
Sbjct: 1272 LTVKDNGRGIPADKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRIWAESVL 1331

Query: 779  EGVTTINCRIP 789
               +     +P
Sbjct: 1332 GEGSNFYFTLP 1342



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 13/185 (7%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF-- 233
           SE      K    S   + ++ +F++    V      G +L  N +     E + +    
Sbjct: 506 SESRGVGEKISPPSPSFTDWRTIFNAEPECVMIVATDGTLLDINPAGVAAIEADSVGAVI 565

Query: 234 -QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSF 286
            ++         ++  ++   S    ++   E       GN +      V        + 
Sbjct: 566 GKRVYSLVVPECQQAFRQLNESVCQGKQGTLEFEIITCRGNRRWMATHAVPVRNEKDGNL 625

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQFHNRSFVELWEID 342
            +  I  DV++      ++      L  L+      I   D++  LQ   +  V++    
Sbjct: 626 VQLSITRDVTQYKQAELEIKRINRTLQTLSDCNQLVIRTQDESELLQKVCQILVDVGNYR 685

Query: 343 LAFLA 347
           LA++A
Sbjct: 686 LAWVA 690


>gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
 gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
          Length = 718

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 90/436 (20%), Positives = 185/436 (42%), Gaps = 14/436 (3%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           A+KL ++   +   E +  + ++     +     + + L   +            EN  V
Sbjct: 4   AHKLADERRARLAAERLLEMKEAELFSANRKLGLHARALSDRIERTEAEVANVRSENRQV 63

Query: 422 QVDLETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           + DL   +       +    +I  + +G A F  D  +  +N A+  ++   E+     T
Sbjct: 64  KSDLSVAHQKVEVAERRLWHSIRAIRDGFAFFNADNEMVGANDAYLGVFDNLEDMKPGVT 123

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFD--DERKSLQGTLELLSDSVLEYSIIPLPNA 536
           +   +         +++  +         +           ++L +    +      P+ 
Sbjct: 124 YPEMLLILTEEGIVDTEDQNPIEWRAEMLERWHAPNPKPRVIKLWNGLYAKLIDQRGPDG 183

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +   +N+TD+V  E  L +       A+  K++F+ ++S+E+R+P+  I+G  DLL  
Sbjct: 184 DVVSLALNITDTVLYENQLKKARYQAETANRAKSAFLANMSHEIRTPMNGIVGMADLLSE 243

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + LG    +Q  +V+ I  S   LL ++ND+LD + ++A  ++L  +T      ++EV +
Sbjct: 244 TGLG---EEQRLFVDTIRNSGEALLTIINDVLDYSKIEAERLELRPTTFDFEQCIHEVMR 300

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +     + +I + V  D  L +  V D  R+ QI + I+ NA+ F+  G   + +    
Sbjct: 301 LLQPPARDKDIALLVDYDLFLPTQVVGDPGRIRQILTNIIGNAVKFTPSGHVLISVTGTH 360

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
           ++G  D   ++++ G  IP      +F  F  V +    +  G GLGLSI +  + L GG
Sbjct: 361 EDGVCDLRVTIQDTGIGIPAPKIDHIFGEFNQVDDEQSREFEGTGLGLSITKRLVELMGG 420

Query: 771 HVSISSSDEGVTTINC 786
            + ++S +   T    
Sbjct: 421 QIWVTSENGEGTCFGF 436



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
            +    + A     ++ + E+           +   + +           ++  V +   
Sbjct: 8   ADERRARLAAERLLEMKEAELFSANRKLGLHARALSDRI------ERTEAEVANVRSENR 61

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           +    + V+ +  V       +  +  +    A F+ +  +   N +++ +++ +L  + 
Sbjct: 62  QVKSDLSVAHQK-VEVAERRLWHSIRAIRDGFAFFNADNEMVGANDAYLGVFD-NLEDMK 119

Query: 348 TNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              +  E+L  L     +  E  N   W+  +   + +         L NG    +I   
Sbjct: 120 PGVTYPEMLLILTEEGIVDTEDQNPIEWRAEMLERWHAPNPKPRVIKLWNGLYAKLIDQR 179

Query: 407 NPRGGTIWMFENLTVQVDLETKYN-------TLVKVQGETIDHLSEGV 447
            P G  + +  N+T  V  E +         T  + +   + ++S  +
Sbjct: 180 GPDGDVVSLALNITDTVLYENQLKKARYQAETANRAKSAFLANMSHEI 227


>gi|295798149|emb|CAX68999.1| sensory transduction histidine kinase [uncultured bacterium]
          Length = 823

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 110/577 (19%), Positives = 212/577 (36%), Gaps = 92/577 (15%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF----HNRSFVELWEIDLAFLATNPSN 352
           ++I+   +  +  +IL     A A FD  R L      H+ +++ L E   A    +P  
Sbjct: 249 EQISRRAEQQYKEKILSLAKTAAAAFDHERLLMNTADDHDPAYLSLREKLQAIRKASPDC 308

Query: 353 DELLEFLRSANKL-----PEQLNWKTWK---------ENIFSVYKSSETHKDT-WHLPNG 397
             +        KL     PE  +    +           +FS +     +    +H  +G
Sbjct: 309 RSISLIGLHGGKLISLVEPEPASTGALRLVGGHPDISRRLFSAFAYGNPYTQGPFHDASG 368

Query: 398 QTLHVIVTSNPRGGTIWMF----------------------------------------- 416
           + +   +      G++                                            
Sbjct: 369 EWITGFIPLLDEKGSVAAILAMDVKTEQFRAHVASARSDAHLMLLIIGVLIVSATTIILS 428

Query: 417 -ENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            E+ T ++ D + +    ++   E +D+  E +      G    S+ +   +       +
Sbjct: 429 SEDSTKEIKDNDERLRLAIERFNEVVDNALEWIWETDSKGIYTYSSASVEKILGYTPQEV 488

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEYSIIP 532
                    +        E       A +IT   +     +     +  +   L  S IP
Sbjct: 489 VGKFFYDFYSNEEKERLKE------LAGLITKKKEPFHRFENRNIHKKGNFVWLLTSGIP 542

Query: 533 LPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           + + Q           +V++  + E  + ++++   +A++ K  F+ H+S+E+ SPL  I
Sbjct: 543 MVDKQGNFLGYRGSNLDVSERKKIEERMEQEHKWAEEANKAKAKFLAHMSHEIVSPLNAI 602

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF++LL  +    LN  Q +Y+  I  +  +LL+++NDILD + +DA  +        L
Sbjct: 603 VGFSELLMKT---PLNDTQKEYLSIIRETEQLLLSIINDILDFSKIDAKQLTFEEIEFNL 659

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
             L+      +  K  E N+ +    D  +      D  RL Q+   +LSNA+ F+++GS
Sbjct: 660 ESLIENSLLVVKGKAKE-NVSLAFKIDETIPKVYKGDPTRLKQVILNLLSNALKFTTQGS 718

Query: 707 TVILKAARDNGDFI---------FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
            + +    +               SVK+ G  IP +  K +F+ F+           G G
Sbjct: 719 -IEISVNTEKHFLEDEQVFRVLQVSVKDTGIGIPLEKQKIIFDPFIQADGSVTRTYGGTG 777

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGLSI  + +   GG + ++SS    +T    +  KE
Sbjct: 778 LGLSIARALVERMGGKIWVTSSPGKGSTFAFTVQLKE 814


>gi|149277505|ref|ZP_01883646.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39]
 gi|149231738|gb|EDM37116.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39]
          Length = 938

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 129/611 (21%), Positives = 235/611 (38%), Gaps = 49/611 (8%)

Query: 208 HRDQAGDILWANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
                G     N S+++    +TE         +     L     + + +      +NF 
Sbjct: 183 IAGTDGFFKKVNPSFERILGWSTEYLLNNSFLDMSHPDDLEANTAELKKLGDGHTTQNFT 242

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNL---TVA 318
               T   G+ ++ +          +  GIA DV++E   ++QL  +   L +    +  
Sbjct: 243 VRFLT-AKGDYRALQWTATPEPGSSSIFGIARDVTEENLRDEQLKASENNLRSFFDNSQG 301

Query: 319 I-AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           +    D        N +  E+       L    S   L + + S +        K   EN
Sbjct: 302 LMCTHDPEGKFISVNNTASEILGYTPEEL----SLMSLYDLIPSGHHPMVVSYLKDIIEN 357

Query: 378 IFSVYKSSETHKD----TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
             +    +  HKD         N     +       G +I    ++T +  LE       
Sbjct: 358 GIASGLMTILHKDGTDRVLLYKNVVERDLQGQPYIIGNSI----DITEKHRLEQTLKKTK 413

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           K+  +T      G   + P  R    +   R++ +   +       I N   T S Y +E
Sbjct: 414 KLLEQTNYVAQIGGWDYDPVSREVTWSDVTRAIHEVGPDF------IPNKENTVSFYRDE 467

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--------MLTFVNV 545
           +    +  A   +   E KS    L +++    +  +  L NA+           TF N+
Sbjct: 468 AHRVQIVQAFRDAIS-EGKSWDLELVIVTAKGRQMWVKVLGNAEFKDGKCRKIYGTFQNI 526

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +  +    L +  E   +A   K+ F+ ++S+E+R+PL  +IGFTDL+  +KL  +   
Sbjct: 527 HEHTKQRTELKKAKELAEQASMAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKLSPV--- 583

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q QY+   + S+  LL ++NDILD + +++G ++L+  +  L +L N+    I  +    
Sbjct: 584 QEQYLRIANESANALLGIINDILDFSKIESGKLELDIESCNLYELGNQAVNIITFQAQSK 643

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI- 720
           ++++     G L     AD  RL Q+   +L NA+ F+  G     +     +D+G F+ 
Sbjct: 644 DLKVLFSIPGDLPPYIYADSLRLRQVLINLLGNAVKFTDHGQIELKIKFVGVKDSGHFVF 703

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I  D    +F  F         +  G GLGL+I    + L G  + + SS
Sbjct: 704 RFEVRDTGIGIKLDKQGQIFEAFSQEDGYTTKRYGGTGLGLTISNQLLGLMGSKLQVKSS 763

Query: 778 DEGVTTINCRI 788
               +T    +
Sbjct: 764 PGKGSTFYFDL 774



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 125/385 (32%), Gaps = 55/385 (14%)

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG-- 157
                I    T+ L   ++L   H   L   T +L+K G        T     +  +G  
Sbjct: 195 PSFERILGWSTEYLLNNSFLDMSHPDDLEANTAELKKLGDGHTTQNFTV--RFLTAKGDY 252

Query: 158 RVSGSCAFLRI--LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           R     A       S+ GI  ++ E  L+ ++L    +  +  FD+   L+   D  G  
Sbjct: 253 RALQWTATPEPGSSSIFGIARDVTEENLRDEQLKASENNLRSFFDNSQGLMCTHDPEGKF 312

Query: 216 LWANISYKKNTETEGIVFQK-AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEH- 271
           +  N      +E  G   ++ ++     L        ++S     +E      + T+ H 
Sbjct: 313 ISVNN---TASEILGYTPEELSLMSLYDLIPSGHHPMVVSYLKDIIENGIASGLMTILHK 369

Query: 272 -GNNKSY---KIV--RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAI 321
            G ++      +V   +       G +ID++++  +   L  T ++L        +    
Sbjct: 370 DGTDRVLLYKNVVERDLQGQPYIIGNSIDITEKHRLEQTLKKTKKLLEQTNYVAQIGGWD 429

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           +D        +     + E+   F+   P+ +  + F R           +  +  I   
Sbjct: 430 YDPVSREVTWSDVTRAIHEVGPDFI---PNKENTVSFYRD----------EAHRVQIVQA 476

Query: 382 YKSSETHKDTWHL------PNGQTLHVIVTSNPR------GGTIWMFENL-------TVQ 422
           ++ + +   +W L        G+ + V V  N              F+N+       T  
Sbjct: 477 FRDAISEGKSWDLELVIVTAKGRQMWVKVLGNAEFKDGKCRKIYGTFQNIHEHTKQRTEL 536

Query: 423 VDLETKYNTLVKVQGETIDHLSEGV 447
              +         + E + ++S  +
Sbjct: 537 KKAKELAEQASMAKSEFLANMSHEI 561


>gi|157961260|ref|YP_001501294.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157846260|gb|ABV86759.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1186

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 100/497 (20%), Positives = 187/497 (37%), Gaps = 25/497 (5%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               IL        + D    ++  N +   L+    + L     N  LL      N   
Sbjct: 232 RLNAILQTAVDGFVVVDTQGVIEEVNPAVSRLFGYSPSELIGR--NVSLLMPSNERNMHD 289

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTIWMFENLTV 421
           E +       +  +V K  E         +G    + +       +     + + ++L+ 
Sbjct: 290 EYIQHYLKSADDKTVGKGRELLAQK---KDGSLFSIELSISKMRIDDEVLFLGLVKDLSD 346

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
               +        +   T++   + +      G I+  N A   L+K    ++  G  + 
Sbjct: 347 VKCAQAAAQRTESILLATLEGSKDALVTIDTSGAIQEVNDAACLLFKFHSEQM-IGQRLE 405

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            +           +  + + A            ++ T        +E ++IP+   Q ML
Sbjct: 406 EVLFRADERDCFHNILEEYRATGEGLAVKHSTQMKATRSDGEKVAIELTLIPVQLGQEML 465

Query: 541 TFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
               + D  R    E  L    E   +  E K+ F+  +S+E+RSPL  ++G  +L+  S
Sbjct: 466 LTAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRSPLNAVLGSVELILES 525

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +LN +Q  Y +    + T LL+ +NDILD + ++AG + L  S      L  +V Q 
Sbjct: 526 ---TLNKEQRIYADTAKEAGTALLSTINDILDFSKIEAGQIVLEESAFSPAKLATQVLQV 582

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AA 713
           ++ K  +  I + +  +  +    + D QRL Q+   ++ NA+ FS  G  V ++   A 
Sbjct: 583 LSPKAQDKGIALAIYVNRNVPESLIGDGQRLRQVLHNLVDNAIKFSF-GGCVAIEMWLAD 641

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
            D       + + G  I E+   ++F  F    + H     G GLGL+I    I   GGH
Sbjct: 642 VDEARLCCKISDQGIGISEESQLTLFEEFSQVHDTHNTNYSGTGLGLAICAELIAQMGGH 701

Query: 772 VSISSSDEGVTTINCRI 788
           + + S     +  +  +
Sbjct: 702 IGVDSQQGQGSCFSFDL 718


>gi|283852658|ref|ZP_06369924.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571949|gb|EFC19943.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1101

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 134/819 (16%), Positives = 272/819 (33%), Gaps = 100/819 (12%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIG--QLHQRI 103
           R   SL           +     +      L     +  ++ G D+ P   G        
Sbjct: 31  RSGVSLEHLNKIERGAAAPSLAAIESLCLALGVKPAMLFLFTG-DKAPGPNGPDSADGPS 89

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK-EGQSFDLVAETQNDCAIKIEGRVSGS 162
             P      L   +W      ++ + +  +L    G+                  R    
Sbjct: 90  GEPAAVPVRLGLFSWRPDTDTVRAAPSLRRLLGYAGKPRQQSLAGFTQAVFPQAARKVAE 149

Query: 163 CAFLRILSLDGIYSELA----ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
              + +L        LA        + ++ +  +  F    D    ++      G +   
Sbjct: 150 --IVALLEASDERRTLALSFCRRDGEVRQGTLALEPFGGEPDKGRLVL------GVLTDV 201

Query: 219 NISYK--KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
           +  Y+  +    EG + ++ + E     +  +++    ++AL             G    
Sbjct: 202 SEPYRLERLVRGEGALVERRVRERTARLERAMERLRRENAALAAGREVRAVAALEGR--- 258

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                   S G  G   D +        L     I+   T  +A+ D      F N ++ 
Sbjct: 259 --------SLGHEGFVQDATARDGAEQYLRRYARIIAASTDMVALVDGEGRYLFVNDTYA 310

Query: 337 ELWEID---------LAFLATNPSNDELLEFLRS--ANKLPEQLNWKTWKENIFSVYKSS 385
                            F+   P   E+   L      +L   + ++ W +      +  
Sbjct: 311 TALAQPRSAIVGRRIAEFIGEAPYRREVAPRLAECLGGRL---VQFERWVDLPGLGRRYL 367

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN----------------LTVQVDLETKY 429
                 W   +G+   V    +     + + E                 ++ + D+ + Y
Sbjct: 368 GIRYAPWTEEDGRQSVVASLRDMTETRLAVEELRESEKTTSILYRISSAVSSEEDMASLY 427

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            T+  + GETID     + +   DG          +     E  +   + +  +      
Sbjct: 428 RTIHSILGETIDTREFFIGLVDKDGDRLDFVLFASATQPPLEPVVGLKSRLTPLTKDNFN 487

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNAQTMLTFVNVT-- 546
            + E+                R+ ++ T         E  + +P+   Q +L  + V   
Sbjct: 488 DFKETSALIEVMRTAHPLLVTRRGMRLTGLACPGQTPEVWLGVPIRVRQEVLGIMAVMHF 547

Query: 547 -------------------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                                    +  R   AL    E   +A++ K+ F+  +S+E+R
Sbjct: 548 SDPGRYGRKDAELLLSVAEQLALGVERRRNLDALRAAKEDADRANQAKSQFLAGMSHEIR 607

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+G T++   ++   L  +Q  Y++ +S S+  LLN++NDILD + ++A  M+L 
Sbjct: 608 TPMNAILGLTEVALRTE---LTEEQRDYLDTVSDSARHLLNILNDILDFSKIEARQMELE 664

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                L++LL    +++     E  +R+ + I  G       D  ++ Q+   ++ NA+ 
Sbjct: 665 AVDFDLHELLRSAIKTLGLGAREKGLRLALDIFPGLPRHVCGDPGKVRQVLVNLIGNAVK 724

Query: 701 FSSKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRR 752
           F++ GS V ++      A  + G  +F V + G  I  DM + +F+ F    +    Q  
Sbjct: 725 FTAAGS-VTVRAGLAAGAVGEPGRLVFEVADTGIGIRPDMLEVIFDSFRQADNSTARQYG 783

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I      L GG +  +S+    +     +P +
Sbjct: 784 GTGLGLAISRELAGLMGGEIRAASTPGCGSRFTFTVPYR 822


>gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
 gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
          Length = 1567

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 103/522 (19%), Positives = 213/522 (40%), Gaps = 31/522 (5%)

Query: 287  GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            G  G+A D+S+   + ++L  + +     L      I  +  +   QF +    E+   +
Sbjct: 652  GYVGVATDISQLKAIQEELKKSEQRWQFALEGSGDGIWDWFVDSNTQFLSLRAKEMLGFE 711

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQL---NWKTWKENIFSVYKSSE--THKDTWHLPNG 397
                    S +E  + +   +    +    ++ T K  I+ V K  +    +  W L  G
Sbjct: 712  ET--DDLTSVEEWDKRIHPKDLEKSEKALQDYFTGKLPIYHVEKRIKCKDGEYKWILDRG 769

Query: 398  QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRI 456
            + +       P    I    ++T +   E K            +    G+ +    +G  
Sbjct: 770  KVVEWTEDKKPL-RMIGTQSDITDRKIAERKIKENEVRFRSLYELSPIGIGLIDVENGTF 828

Query: 457  KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              +N +  +     +   +  ++ + +        ++     +    + +F+       G
Sbjct: 829  IEANQSLITSSGYTKEEFTGISYRKIVPKEFIPLVSDKFKKVVLNEKVEAFEKSFIKKDG 888

Query: 517  TL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            T    L++ + ++ +         + T  ++T     E +L E       A + K+ F+ 
Sbjct: 889  TTFPALVNGAKIKDT---NGKDIILATIQDITRRKEMENSLVEAKLKAEAASKSKSEFLA 945

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            ++S+E+R+PL  +IGFTDLL  ++   LN+ Q QY+E +  S+  LL+L+NDILD + ++
Sbjct: 946  NMSHEIRTPLNGVIGFTDLLMKTE---LNTSQKQYMETVYNSANTLLDLINDILDFSKIE 1002

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
            AG ++L+   I + +L  +    +  K HE  + + +    K+      D  R+ QI + 
Sbjct: 1003 AGKLELSVEKINIIELCGQTIDVVKHKAHEKGLEVLLNISQKVDRYIYGDSVRIRQILTN 1062

Query: 694  ILSNAMDFSSKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            +L NA+ F++KG  + L+            ++ F V++ G  I     + +F  F     
Sbjct: 1063 LLGNAVKFTNKGE-IELRIEAGNKNTEHQREYTFIVRDTGIGIAPQNLERIFKAFDQEDS 1121

Query: 748  RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGL+I    + L    + + S     ++ + +
Sbjct: 1122 STTRKYGGTGLGLTISNKLLYLMNSKLDVQSEPGIGSSFSFK 1163



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 103/287 (35%), Gaps = 19/287 (6%)

Query: 294 DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFH-NRSFVELWEID------ 342
           D++++    ++L    +   +I  N  + I + D      +H N S  +++ ++      
Sbjct: 259 DITEQKLKENELKLTQSRFRDIFDNSPLGIILIDPKTNEVYHANESAKKIFGLESLSSQE 318

Query: 343 -LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
              F   N   +E  E +    K   Q  +  ++      Y+  + H     L +  +L 
Sbjct: 319 IQKFSFQNQIFEEDFELISEKRKKLLQGKFDNYRIE----YRFYKDHGRIIWLQSFTSLL 374

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
                +PR   I   E++T++  LE +            D+   G+A+   DG+    N 
Sbjct: 375 RAEDGSPR-LIIAQVEDITLRKLLEAESFKNASQFKSAFDYSPNGMALVSLDGKWVNVNR 433

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               +    +  L       ++        +      L A  I +++ E++ +     LL
Sbjct: 434 NLSKMIGYTQEELLE-MSFMDVTYHEDLDKDLKLLSKLMAGEIDTYNMEKRYIHKEGHLL 492

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              +L  S+    N + +     + D   A+ A    N++ R+   +
Sbjct: 493 -WGLLTVSLQKDENGKPLYFISQINDITAAKEAQENINKSYRELQNM 538



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-- 394
           ++ E+D  F+   PS    L+F        E  N          V ++  ++ D + +  
Sbjct: 179 DIHEVDEDFV---PSMQTGLDF------YLEGENRDRITRIFTEVAENGGSYIDNFQILT 229

Query: 395 PNGQTLHVIVTSNPR---GGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             G    V V  N     G TI +   F+++T Q   E +         +  D+   G+ 
Sbjct: 230 AKGHIKWVKVFGNAEQEAGRTIRVYGAFQDITEQKLKENELKLTQSRFRDIFDNSPLGII 289

Query: 449 VFGP-DGRIKLSNPAFRSLWKT 469
           +  P    +  +N + + ++  
Sbjct: 290 LIDPKTNEVYHANESAKKIFGL 311


>gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 584

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 153/379 (40%), Gaps = 26/379 (6%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F+ ++  +  + ++     +     + ++ +G+ +   +G+I L NPA   ++  EE R 
Sbjct: 230 FQTMSEHLREQVSQLRAERQKLHSVLKNMKDGILLVDENGKISLINPAAAGMFGIEETRA 289

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPL 533
              + I  +                   +        +   G +E+L +   L+  + PL
Sbjct: 290 IGASLIEAV------------RHHTIVELWERTRHSEQPQDGEVEVLPEHRFLQVVLTPL 337

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                  T +   D  R  R    +             FV +VS+ELR+PL ++    + 
Sbjct: 338 GKETGNATLLVFHDLTRERRVERVRR-----------DFVSNVSHELRTPLASLKALVET 386

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+   L    + Q  ++  +      L  +V ++L+L+ +++G++ L    +   ++L  
Sbjct: 387 LQEGALEDPPAAQR-FLRQMEIEIDNLTQMVRELLELSRIESGLVPLQRRPVSPCEILRR 445

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + +  +     + ++V     L    AD +R+ Q+   +  NA+ F+  G  + L   
Sbjct: 446 GAERMRLQAERAGLTLQVDCPESLPEVFADAERVEQVLVNLTHNAVKFTPPGGEITLGVK 505

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           ++     F V++ G  IP +  + +F RF          G GLGLSI    +  HGG + 
Sbjct: 506 QEGQAICFWVRDTGVGIPPEDLERIFERFYKTDRSRSGEGTGLGLSIARHIVETHGGRIW 565

Query: 774 ISSSDEGVTTINCRIPSKE 792
             S  +  +T    +P ++
Sbjct: 566 AESQVQQGSTFFFTLPLEK 584



 Score = 45.7 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 27/165 (16%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   +  +    + +L N+   I + D+N  +   N +   ++ I+     T      L
Sbjct: 239 EQVSQLRAERQKLHSVLKNMKDGILLVDENGKISLINPAAAGMFGIEE----TRAIGASL 294

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---GGT 412
           +E +R    +      + W+    S         +   LP  + L V++T   +     T
Sbjct: 295 IEAVRHHTIV------ELWERTRHS---EQPQDGEVEVLPEHRFLQVVLTPLGKETGNAT 345

Query: 413 IWMFENLTVQV-----------DLETKYNTLVKVQGETIDHLSEG 446
           + +F +LT +            ++  +  T +      ++ L EG
Sbjct: 346 LLVFHDLTRERRVERVRRDFVSNVSHELRTPLASLKALVETLQEG 390


>gi|302874875|ref|YP_003843508.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307690508|ref|ZP_07632954.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302577732|gb|ADL51744.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 894

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 103/522 (19%), Positives = 207/522 (39%), Gaps = 36/522 (6%)

Query: 293 IDVSKE----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS-------FVELWEI 341
            DV++       +         I+ N++ A+ +FD++  +   N+S       F E  ++
Sbjct: 351 RDVTERVKKDELIRMNKEQLESIIENMSDALVLFDKDGNITKVNKSARKSVFRFAEGKKM 410

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD--TWHLPNGQT 399
           +  F      +    E L+  + +      +  K    S Y++     D  T+   NG  
Sbjct: 411 NDHFNHAKIYDMNFKEILKENSAIS-----RILKGEKLSRYQTIVQVGDNLTYTEANGNP 465

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKY--NTLVKVQGETIDHLSEGVAVFG-PDGRI 456
           +     SN  GG + ++ ++T ++  E      T   +    I+ L  G A F  PD RI
Sbjct: 466 I-YDKKSNFVGGVLVVY-DITDRIKSEQTLLLKTQYNLLSRIIEDLDVGFARFSYPDFRI 523

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE-SDGWDLFAAIITSFDDERKSLQ 515
              N  + +  K    +L     ++         ++E S+       +I    D   + +
Sbjct: 524 IDFNQKYFNQLKLINPKLDSPASMKGKDPFGIFIFDEKSEVLQNIQNLIEKRGDSYVTNR 583

Query: 516 GTLELLSDSVLEYSIIPLP--NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             +    +        PL   N Q +       D      A  +  E L     ++    
Sbjct: 584 KFIMDGEERFFRIIRQPLFGLNNQVIEVIQIAIDITEEVTAKNKMEETL----RMQEEIF 639

Query: 574 QHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            ++S+EL++PL  I     L+    K + +     K S+ +  I  +      L+N+I+D
Sbjct: 640 SNISHELKTPLNVIFSTNQLMELYFKNNCIEGNKEKVSKSINIIKQNCYRFTKLINNIVD 699

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ +D+G  +LN S   + ++  ++ QSI+  +    + I   ++ +  +   D  ++ +
Sbjct: 700 VSKIDSGFFELNLSNENIVNITEDIVQSISEYIEGKGLSIIFDTNVEEKTIACDPDKIER 759

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-- 747
           I   ++SNA+ FS+    +++            V++ G  I      ++F RF       
Sbjct: 760 IILNLVSNAIKFSNPEGQILVNVFDKGEFVEIIVEDTGIGIESKHLNNIFERFHQVDKSL 819

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                G G+GLS+V+S + +HGG +S+ S     +T    +P
Sbjct: 820 SRNAEGSGIGLSLVKSIVEMHGGSISVKSQVNKGSTFKVVLP 861



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 97/259 (37%), Gaps = 22/259 (8%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           I+ N++  + I D++  L   N S    +        +  + +++LE  +  +     L 
Sbjct: 243 IIENMSDGLHIIDKDYNLSLINSSAKNSFYKH----GSIKTLEDVLEHTKYFDSDGIPLT 298

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIWMF---ENLTVQV 423
              + E    + +  + ++ T + P+G   H  V+ +P     G  +       ++T +V
Sbjct: 299 LDNFPEVNVLMGERLKEYRITSNRPDG-VFHFNVSGSPVYDKNGNVVKAIMCTRDVTERV 357

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             +       +     I+++S+ + +F  DG I   N + R              H  + 
Sbjct: 358 KKDELIRMNKEQLESIIENMSDALVLFDKDGNITKVNKSARKSVFRFAEGKKMNDHFNHA 417

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNA----- 536
                   N  +     +AI      E+ S   T+  + D  +  E +  P+ +      
Sbjct: 418 KIYD---MNFKEILKENSAISRILKGEKLSRYQTIVQVGDNLTYTEANGNPIYDKKSNFV 474

Query: 537 QTMLTFVNVTDSVRAERAL 555
             +L   ++TD +++E+ L
Sbjct: 475 GGVLVVYDITDRIKSEQTL 493



 Score = 44.2 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 101/288 (35%), Gaps = 21/288 (7%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELW---EIDLAFLATNPSNDEL 355
            +  +L +  +  ++    +AIF      L   N  +++ W   + +   +   P    L
Sbjct: 102 RIEKRLPYILQFTNDNVAGVAIFSMPEGILLRANEKYIKFWCDKKTEYENILGKPLEKIL 161

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             F  S  +   +  ++T K + +S   ++E  K      +   L V ++   +   +  
Sbjct: 162 SGFNGSNLEKVIKEIFRTGK-SFYSAGGNNEYLKKDDSCYDISLLPVRISGKDK-YLVHT 219

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T  V          +     I+++S+G+ +   D  + L N + +       N   
Sbjct: 220 TCDITENVLHSELIEEQEEELKAIIENMSDGLHIIDKDYNLSLINSSAK-------NSFY 272

Query: 476 PGTHIRNIAATCSR-YYNESDGWDL----FAAIITSFDDERKSLQGTLELLSD-SVLEYS 529
               I+ +        Y +SDG  L    F  +     +  K  + T            S
Sbjct: 273 KHGSIKTLEDVLEHTKYFDSDGIPLTLDNFPEVNVLMGERLKEYRITSNRPDGVFHFNVS 332

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             P+ +    +    +      ER   +K+E +R   E   S ++++S
Sbjct: 333 GSPVYDKNGNVVKAIMCTRDVTER--VKKDELIRMNKEQLESIIENMS 378



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 98/312 (31%), Gaps = 62/312 (19%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-------------- 221
            ++ E   K + +  +    + + +++   +   D+ G+I   N S              
Sbjct: 351 RDVTERVKKDELIRMNKEQLESIIENMSDALVLFDKDGNITKVNKSARKSVFRFAEGKKM 410

Query: 222 -------------YKKNTETEGIVFQKAIGESRKLFKE--EIKKRMISSSALEKNFCETV 266
                        +K+  +    + +   GE    ++   ++   +  + A      +  
Sbjct: 411 NDHFNHAKIYDMNFKEILKENSAISRILKGEKLSRYQTIVQVGDNLTYTEANGNPIYDKK 470

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD-QN 325
           S    G    Y I   + S           + + +  Q      I+ +L V  A F   +
Sbjct: 471 SNFVGGVLVVYDITDRIKS----------EQTLLLKTQYNLLSRIIEDLDVGFARFSYPD 520

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS- 384
             +   N+ +    ++       NP  D          K P  +     K  +    ++ 
Sbjct: 521 FRIIDFNQKYFNQLKL------INPKLDSPASM---KGKDPFGIFIFDEKSEVLQNIQNL 571

Query: 385 SETHKDTW-----HLPNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLETKYNTL 432
            E   D++      + +G+     +   P  G        I +  ++T +V  + K    
Sbjct: 572 IEKRGDSYVTNRKFIMDGEERFFRIIRQPLFGLNNQVIEVIQIAIDITEEVTAKNKMEET 631

Query: 433 VKVQGETIDHLS 444
           +++Q E   ++S
Sbjct: 632 LRMQEEIFSNIS 643


>gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
 gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
          Length = 1052

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 156/389 (40%), Gaps = 30/389 (7%)

Query: 417 ENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           E L  +++L T+       +    I+     VA+     RI L N      +      + 
Sbjct: 147 EGLEQEIELRTRDLQASEALSRTIIEGAPSSVAIIDNKQRIILWNNTAEQTYGYRFEDIE 206

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                  +         +    +L       F+D+ K   G  E+ +       +IP+  
Sbjct: 207 GSNLCELLRIELPEELKDILSGEL------RFEDQSKVSGGFFEVET-YTSTGRMIPIDL 259

Query: 536 AQTMLTFVNVTD----------SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             T+  F +                 E  L +      +A E+K+ F+ ++S+E+R+P+ 
Sbjct: 260 GITIFLFDDQCRAAMFLRDVTSRKAVEDELNQARSKAEEAVEVKSMFLANMSHEIRTPMN 319

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG + L   ++   L  KQ  Y+  I  S+++LL ++NDILD + ++AG + +     
Sbjct: 320 AIIGMSHLALKTE---LTPKQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIETIEF 376

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSK 704
            L+D+L+ V      K  E  + +    D  +      D  RL QI   +++NA+ F+ +
Sbjct: 377 HLDDVLHNVSMVTGQKAFEKGLELIFQIDRDVPKVLYGDPLRLGQIIINLVNNAVKFTEQ 436

Query: 705 GSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           G  + +   R        +  FSV++ G  +  +    +F+ F        RR  G GLG
Sbjct: 437 GE-ITVHVTRTPHSDQKVELKFSVQDTGIGMSPEQSDKLFSAFTQADGSTTRRYGGTGLG 495

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINC 786
           LSI    + L GG + + S     +    
Sbjct: 496 LSICRRLVELMGGSIQVESILGQGSEFTF 524


>gi|332528708|ref|ZP_08404685.1| two-component system sensor-response regulator hybrid protein
           [Hylemonella gracilis ATCC 19624]
 gi|332041774|gb|EGI78123.1| two-component system sensor-response regulator hybrid protein
           [Hylemonella gracilis ATCC 19624]
          Length = 1345

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 105/538 (19%), Positives = 214/538 (39%), Gaps = 58/538 (10%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +   +      +      IL   + AI   D +  +   NR+  E++    ++ A   + 
Sbjct: 323 VSAQRRRQALIEDARLAAILDGTSDAIIGKDLHGRVTSWNRAAAEIFGY-ASWEAVGKTL 381

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
            EL   +  A++  E+L+            ++           NG  + V+VT++P    
Sbjct: 382 SEL---IVPADRQAEELSILA----RIGRGETVAPIATQRLRRNGTLIDVMVTASPVRDA 434

Query: 409 RG---GTIWMFENLTVQV------------------DLETKYNTLVKVQGETIDHLSEGV 447
            G   G      ++T ++                  +   +     +     ID L   V
Sbjct: 435 DGQVVGAASTLHDMTDELIARKSMLELNASLEEQVKERTARLAASERFLHSLIDALPGLV 494

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           + +  D R + SN  ++  +      ++ G   + +        NE         I  + 
Sbjct: 495 SYWDTDMRCRYSNRTYQKWFGRSPEEMN-GISRQELMGEELFRLNEPY-------IQAAL 546

Query: 508 DDERKSLQGTLELLSDSVLEY--SIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEA 561
             E + ++  + L     +    + +P+     +  ++    +VT   +AE AL +  + 
Sbjct: 547 RGEPQVMERAVTLPDGKTINTLANFLPVFEEGVVCGYIVVSTDVTVLKQAEEALVKAKQK 606

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A + K+ F+ ++S+E+R+P+  I+G   LL+     SL+    + V+ I A+   LL
Sbjct: 607 AEDATQAKSDFLANMSHEIRTPMNAILGLCYLLEQQ---SLSPTSREMVQKIHAAGKTLL 663

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSF 680
            ++ND+LD + ++A  M +      L+D+L+ +   ++  +    + + V          
Sbjct: 664 TIINDVLDFSKIEAQHMVIEQVPFRLSDVLDNLASIMSASLGSKPLELVVGPPPDGANYL 723

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIPEDMC 735
           + DR RL Q+   + SNA+ F+ +G   V +    D G+      FSV++ G  I  D  
Sbjct: 724 IGDRLRLGQVLVNLASNAIKFTGQGEVEVRVDRLPDTGNGRVMLRFSVRDTGIGIAPDKQ 783

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + +F+ F        R   G GLGL+I    + L GG + + S+    +  +  +P +
Sbjct: 784 EMIFHAFSQADTSTTRSFGGTGLGLAISRHLVALMGGRLQVHSAPGQGSNFHFELPFE 841



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/335 (12%), Positives = 103/335 (30%), Gaps = 59/335 (17%)

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           + G + G+ A + +L    +Y  L     + + L    +    + D     +  +D  G 
Sbjct: 303 VVGLMVGASALVALL----LYVSLVSAQRRRQALIED-ARLAAILDGTSDAIIGKDLHGR 357

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           +   N +     E  G    +A+G++         ++    S L +              
Sbjct: 358 VTSWNRA---AAEIFGYASWEAVGKTLSELIVPADRQAEELSILARIGRGETVAPIATQR 414

Query: 275 -----KSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQL---------------- 305
                    ++   +          G A    D++ E+     +                
Sbjct: 415 LRRNGTLIDVMVTASPVRDADGQVVGAASTLHDMTDELIARKSMLELNASLEEQVKERTA 474

Query: 306 ------THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
                    + ++  L   ++ +D +   ++ NR++ + +      +      + + E L
Sbjct: 475 RLAASERFLHSLIDALPGLVSYWDTDMRCRYSNRTYQKWFGRSPEEMNGISRQELMGEEL 534

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RG---GTI 413
               +L E       +     + ++         LP+G+T++ +    P    G   G I
Sbjct: 535 F---RLNEPYIQAALRGEPQVMERAV-------TLPDGKTINTLANFLPVFEEGVVCGYI 584

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +  ++TV    E       +   +     S+ +A
Sbjct: 585 VVSTDVTVLKQAEEALVKAKQKAEDATQAKSDFLA 619



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 88/254 (34%), Gaps = 23/254 (9%)

Query: 130 ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL---------RILSLDGIYSELAE 180
           AT++LR+ G    +            +G+V G+ + L         R   L+   S   +
Sbjct: 411 ATQRLRRNGT--LIDVMVTASPVRDADGQVVGAASTLHDMTDELIARKSMLELNASLEEQ 468

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQK 235
              +  +L+        L D+L  LV + D      ++N +Y     +   E  GI  Q+
Sbjct: 469 VKERTARLAASERFLHSLIDALPGLVSYWDTDMRCRYSNRTYQKWFGRSPEEMNGISRQE 528

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVS--TLEHGNNKSYKIVRVLNSFGEAGIAI 293
            +GE      E   +  +           T+      +       +       G   ++ 
Sbjct: 529 LMGEELFRLNEPYIQAALRGEPQVMERAVTLPDGKTINTLANFLPVFEEGVVCGYIVVST 588

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF---HNRSFVELWEIDLAFLATNP 350
           DV+      + L    +   + T A + F  N   +     N      + ++   L+  P
Sbjct: 589 DVTVLKQAEEALVKAKQKAEDATQAKSDFLANMSHEIRTPMNAILGLCYLLEQQSLS--P 646

Query: 351 SNDELLEFLRSANK 364
           ++ E+++ + +A K
Sbjct: 647 TSREMVQKIHAAGK 660


>gi|86750625|ref|YP_487121.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
 gi|86573653|gb|ABD08210.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
          Length = 627

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 167/383 (43%), Gaps = 23/383 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE-----NRLSPGTHI 480
           E +Y  L +       H+S+ ++  G +G ++  +PA  +L          + L    H+
Sbjct: 224 EERYRLLAR-------HMSDVISRHGRNGAVQFISPAVEALIGVPASALSGHGLFDRVHV 276

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP------ 534
            +  A      +   G +  +       +  +  +G         LE    P        
Sbjct: 277 ADRPAYLKALSDAGRGGEARSVEFRVRREVARDDRGRPSAAEFIWLEMRCRPFETGVVSA 336

Query: 535 --NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              A  +    +VTD  + E+AL E      +AD  K+ F+  +S+ELR+PL  +IGF+D
Sbjct: 337 AGEADVVAVMRDVTDRKQQEQALEEARAEAGRADATKSRFLATMSHELRTPLNAVIGFSD 396

Query: 593 L-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           + L   +L     ++ +Y + I+ S   LL++VN ILD++ +++G  ++          L
Sbjct: 397 MILHEDELMLAPERRKEYAQLINDSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPAL 456

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                 +A K  EN I +   +   L   V D +   QI   ++SNA+ F+ +G TV + 
Sbjct: 457 LNCCNLLALKARENGIDLVTRAPENLPEIVGDPRAFKQILLNLVSNAIKFTERGGTVSVD 516

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
           A  +    +  V + G  I  +  K + + F         +  G GLGLSIV+S + +HG
Sbjct: 517 AMVEGARLVLRVSDTGVGIAAEDLKRIGDPFFQAGTTYQRRHEGTGLGLSIVKSLVGMHG 576

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S  +  TT+   +P  +
Sbjct: 577 GDIEVKSEVDRGTTVTVSLPLAQ 599


>gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1347

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 164/393 (41%), Gaps = 33/393 (8%)

Query: 424  DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
              E +  T  +     +  L + V    PDG++     A        E+ + P      I
Sbjct: 691  QQEAQLRTSEQRNHLIVSALPDLVLRLRPDGQVVDVVAA--------ESMVLPMAPTAMI 742

Query: 484  AATCSRYYNESDGWDLFAAIITSF-DDERKSLQGTLEL-LSDSVLEYSI-IPLPNAQTML 540
             +T  + +  +       A+  +F   E ++L   L +   +   E  I   LP  + + 
Sbjct: 743  NSTLEQLFPAAIATQYRQALSAAFASGELQTLAYQLIVEAKEYFFEARIKAALPAEEAIA 802

Query: 541  TFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSFVQHVSYELRS 582
               +VT    AE AL  + + L +                      K+ F+ ++S+ELR+
Sbjct: 803  IVRDVTAWRNAELALQVERDLLAQRVAERTAELHRANAELLRAARTKDEFLANMSHELRT 862

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL +I+  ++ L     G L  +Q + +  I AS   LL L+ND+LDLA ++A  ++L  
Sbjct: 863  PLNSILALSESLLEELYGPLRDQQQKAIRAIEASGRHLLALINDVLDLAKIEANRIELVK 922

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              +  +D+       +  +  +  I + +  D     FVAD +RL QI   +LSNA+ F+
Sbjct: 923  EVVAASDVCEASMALVKEQATKKQIHLSIQLDDPHARFVADPRRLKQILVNLLSNAVKFT 982

Query: 703  SKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
              G  V L+   D   G   F+V + G  I E+    +F  FV        Q  G GLGL
Sbjct: 983  PAGGAVSLQVTTDTTQGTIAFTVSDTGIGIAEEDLSRLFQPFVQLDSGLSRQHEGTGLGL 1042

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +V   + LHGG V + S     +     +P +
Sbjct: 1043 VLVRRLVELHGGKVEVESMPGVGSRFTVTLPYQ 1075


>gi|296133877|ref|YP_003641124.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296032455|gb|ADG83223.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 534

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 138/267 (51%), Gaps = 4/267 (1%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y +  L     +  +   T     +R + E N  L KA+ +KN F+ + S+ELR+PLT I
Sbjct: 261 YIMRALFILSVVRLYQTNTVLHNQKRQMAEINLQLEKANRLKNEFLANTSHELRTPLTAI 320

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           I FT+LL   + G LN+ Q  Y+  I+ SS  LLN +N++LDLA ++AG  +++   + +
Sbjct: 321 IAFTELLLDEETGPLNNMQRDYINEINESSQQLLNYINNLLDLAKIEAGKFEVHREAVSI 380

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL + V +           ++ +  +  +     D  +++Q+   +LSNA  F+ +   
Sbjct: 381 SDLCSSVLRKTEPIFKVKKQQVIIDVEDNIPPVYVDPPKMMQVLINLLSNAHKFTPEDGR 440

Query: 708 VILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVES 763
           + L+A  ++     I SV +NG  I  +  + +F +F    +R +   +G GLGL++V+ 
Sbjct: 441 IELRARMNDRRDQVIVSVSDNGVGISSENLELIFEKFRQVNNRPEPLYQGTGLGLALVKH 500

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            + +HGG V + S     +T    IP 
Sbjct: 501 IVEMHGGQVKVESILGQGSTFYFSIPL 527


>gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 549

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 103/406 (25%), Positives = 165/406 (40%), Gaps = 35/406 (8%)

Query: 417 ENLTVQVDLETKYNTL-------VKVQGETIDHLSEGVA---VFGPDGRIKLSNPAFRSL 466
            ++T Q     +               G   +++  GV    V  PDG     N  + S 
Sbjct: 2   RDITEQETALRERQKAADTIKKSEDRFGRIANNMP-GVLYQYVLHPDGS---HNFMYMS- 56

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSV 525
            + +E        I   A    + +   D   L A+I+ S       S +G L   S   
Sbjct: 57  ERCQEIFGLDADTITRDANQLFQLFEAEDFISLKASILLSATTLNTWSWEGKLVTPSGEN 116

Query: 526 LEYSIIPLPNAQ------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                I  P  Q           V++++    E  L +    L +A  +K+ F+ ++S+E
Sbjct: 117 KWIQGISQPERQVNGDIVWDGVVVDISERKLMEIELQKTVAELDRATRLKDEFLANMSHE 176

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  I+G ++ LK   LG+LNS Q   +  I  S   LL L++DILD++ ++AG ++
Sbjct: 177 LRTPLNGILGMSEALKEGILGALNSNQHHAIAMIEKSGKHLLELISDILDISKIEAGKLE 236

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSN 697
           L  + + + +L       +        I I++     L       D +RL Q+   +LSN
Sbjct: 237 LYLTEVRVQELCTSSLTLVNHLAFTKQINIEINIPQALEKTLIKVDNRRLRQVLINLLSN 296

Query: 698 AMDFSSKGSTVIL---------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           A+ F+ K   + L          A        FSV +NG  I  D    +F  F      
Sbjct: 297 ALKFTHKSGKINLNVGIKTSPNAAISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSS 356

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              Q  G GLGL++V+  I LHGG V +SS     +     +P +E
Sbjct: 357 LNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGKGSCFTVYLPYQE 402


>gi|309791141|ref|ZP_07685674.1| Signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226839|gb|EFO80534.1| Signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 499

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 152/371 (40%), Gaps = 26/371 (7%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +   +++  +G+ +     RI   NPA   ++    + +        I     R Y    
Sbjct: 123 RQAIVEYAVDGIMIIDEHDRITTFNPAAERMFGYRADEIIGHPIAHLIPDPLHRQYKLIS 182

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             D               +     +L++  L   I+            + T   + E  L
Sbjct: 183 LGDEIIGRHKDTHSFPMDISSGQIILNNKRLYVLIL-----------RDATRRKQVEEEL 231

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               +A   A   K++F+ ++S+ELR+PL  IIG+++LL    + +        +  I  
Sbjct: 232 ERARDAAEAASRAKSTFLANMSHELRTPLNAIIGYSELLIEDAVDAQEEDLESDLRRIHR 291

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           + T LL L++DILD++ ++AG M L Y    L  +L++V  ++A    +   R      G
Sbjct: 292 AGTHLLGLISDILDISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQRGNRYITQYSG 351

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSV 723
           + GS  AD  R+ QI   +L NA  F+ +  T+ L+ A +  D             +F V
Sbjct: 352 QPGSIYADPVRVRQILINLLGNACKFT-ENGTISLRIAIEGDDYAAGHDKSTGNAILFEV 410

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  + ED    +F  F        R   G GLGL++   F  + GG V + S     
Sbjct: 411 TDTGIGMSEDQMARLFQPFTQADDSTTRKYGGTGLGLALTRYFCQMMGGTVDVVSRLGQG 470

Query: 782 TTINCRIPSKE 792
           +T   R+P ++
Sbjct: 471 STFMVRLPMRD 481



 Score = 41.5 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 13/123 (10%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
           +   I+      I I D++  +   N +   ++      +  +P    + +        P
Sbjct: 122 YRQAIVEYAVDGIMIIDEHDRITTFNPAAERMFGYRADEIIGHPIAHLIPD--------P 173

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
               +K        + +  +TH     + +GQ +      N +   + +  + T +  +E
Sbjct: 174 LHRQYKLISLGDEIIGRHKDTHSFPMDISSGQII-----LNNKRLYVLILRDATRRKQVE 228

Query: 427 TKY 429
            + 
Sbjct: 229 EEL 231


>gi|260777827|ref|ZP_05886720.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605840|gb|EEX32125.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1057

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 161/390 (41%), Gaps = 28/390 (7%)

Query: 417 ENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           E L  +++  T+       +    I+     V +     +I L N      +       +
Sbjct: 145 EGLEEEIERRTRDLQASEALSRTIIEGAPSSVVILDAHKKIVLWNKTAIETYGYSVEEAT 204

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                  + A      +E    D+      + +D+ K + G    +     E   IP+  
Sbjct: 205 GQNLFELLRAELPLELSELLSQDI------TIEDQDK-VSGAFFEVQTYTREDKPIPIDL 257

Query: 536 AQTMLTFVNVTD----------SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             T+  F +               + E  L E      +A EIK+ F+ ++S+E+R+P+ 
Sbjct: 258 GMTVFLFDDECRIAMFLRDVTSRKQVEDELNEARAKAEEAVEIKSMFLANMSHEIRTPMN 317

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG + L   +    L  KQ  Y+  I  S+++LL ++NDILD + ++AG + +     
Sbjct: 318 AIIGMSHLALKT---DLTPKQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIEEIEF 374

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L+D+L+ V      K  E  + +       +  +   D  RL QI   +++NA+ F+ +
Sbjct: 375 YLDDVLHNVSMVTGQKAFEKGLELLFDIPRDVPKTLYGDPLRLGQIIINLVNNAVKFTEQ 434

Query: 705 G----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           G    S  ++++  D  +  FSVK+ G  + E+    +FN F        R   G GLGL
Sbjct: 435 GEISVSVKVIRSLDDKIELGFSVKDTGIGMSEEQSSKLFNAFTQADGSTTRKYGGTGLGL 494

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           SI    + L GG +S+ S     +T    I
Sbjct: 495 SICRRLVELMGGEISVDSELNVGSTFRFNI 524


>gi|237712903|ref|ZP_04543384.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409656|ref|ZP_06086196.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294643208|ref|ZP_06721035.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807177|ref|ZP_06765993.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229447022|gb|EEO52813.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352509|gb|EEZ01609.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292641444|gb|EFF59635.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445628|gb|EFG14279.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 621

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 121/542 (22%), Positives = 216/542 (39%), Gaps = 44/542 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E GN K Y I         A      S    + +     + I  NL V I ++D+   
Sbjct: 104 TDEDGNTKVYGIAETQEGIRIA------SAHQALQNSERILHNIYKNLPVGIELYDREGR 157

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSSE 386
           L   N+  +E++ I           D L   L     LP+++  K    EN+   ++   
Sbjct: 158 LIDLNKKELEMFHI-------RTKEDILGINLFDNPVLPDEIKQKLRDYENVDFTFRYDF 210

Query: 387 THKDTWHLPNGQT--LHVIVTS-------NPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +  D+++ P   T  L ++  +       +     + +  + T       K         
Sbjct: 211 SKVDSYYSPEKSTGFLDLVTKATTLYDHNHEPINYLLINVDKTEDTIAYNKIQEFESFFD 270

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD-- 495
              D+   G A F       LS   +             GT +  I    S ++ E    
Sbjct: 271 LVGDYAKVGYAHFDA-----LSRDGYALRSWYRNVGEEEGTPLPEIIGIHSHFHPEDQAV 325

Query: 496 GWDLFAAIITS------FDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDS 548
             D    ++         D   +   G       +VL  +  P  N  + +    ++T  
Sbjct: 326 MIDFLDKVVKGESSKLCRDVRIRRANGNYTWTRVNVLVRNYQPQDNIIEMLCINFDITQL 385

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ER L    E   +AD +K++F+ ++S+E+R+PL  I+GF+      +      ++ Q
Sbjct: 386 KETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSS---LLEEAEDAEEKHQ 442

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV  I  ++ +LL L++DILDL+ ++AG   +    +    L NE+ Q++  K     ++
Sbjct: 443 YVTIIEENNKLLLQLISDILDLSKIEAGTFDVIPEQVNAQQLCNELFQAMQMKATP-QVK 501

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I +  +     F +++ RL Q+    ++NA+ F+S+GS +I+    +  +  FSVK+ G 
Sbjct: 502 ILLAPELPELIFTSNKNRLYQVLLNFVTNALKFTSEGS-IIIDYRINGNEVRFSVKDTGI 560

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  +  +++F RFV         G GLGL I +S I   GG + + S     +      
Sbjct: 561 GIAPEKQEAIFTRFVKLNSF--IPGTGLGLPICQSIITQLGGKIGVESEPGKGSCFWFTH 618

Query: 789 PS 790
           P 
Sbjct: 619 PL 620


>gi|94266210|ref|ZP_01289919.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93453217|gb|EAT03675.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 109/533 (20%), Positives = 209/533 (39%), Gaps = 66/533 (12%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            ++   +        E++ N+   +  +  +  + F N     L+      L        
Sbjct: 283 TAQRERLRHSEAGYRELVENVNSIVLRWRADGTITFINEYGARLFGYTPGELVGRSVVGS 342

Query: 355 LLEFLRSANK--------LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
           ++    S+ +        + +        EN       S      W   N + +      
Sbjct: 343 IVPETESSGRDLAAMMVDIAQHPENYHDNENENICLDGSRP----WISWNNRAVR----- 393

Query: 407 NPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              GG     + +  + T +  +E       +     + H+   V               
Sbjct: 394 -DNGGATVEVLSIGRDHTQRRRIELALKNSERRFRTMVGHIYGAV--------------- 437

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           +R L ++          I +I    +R + E  G      II   + +R + + +  +  
Sbjct: 438 YRCLPESPWAVEFVSEPIGDITGYPAREFME--GRRNLEEIIHPAERDRIAHEVSQAVAE 495

Query: 523 DS--VLEYSIIPLPNAQTMLT------------------FVNVTDSVRAERALTEKNEAL 562
               VLEY II     +  +                     ++T+  R ER L E  +A 
Sbjct: 496 GRPYVLEYRIINNERVERWVHERGQAVVDEDGVTWLDGVIFDITNRKREERELVEARDAA 555

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A++ K++F+ ++S+ELR+PL  IIG++++L            ++ ++ I  ++  LL 
Sbjct: 556 KAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEEHGLEGCAEDIQRIREAARHLLG 615

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LD +  ++G + L      L++LL  V   I   + E   R+ V ++ +LG+   
Sbjct: 616 LINEVLDFSKTESGRISLTMEECDLDELLAAVVDIIRPLLPERENRLLVEAEEELGTIRT 675

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFI-FSVKNNGSSIPEDMCKSV 738
           D  RL QI   +LSNA  F+ KG  + L+     RD G+++   +++ G  I E+  K +
Sbjct: 676 DGTRLRQILYNLLSNAAKFTEKG-FITLRTRRLMRDGGEWVEIDIQDTGIGISEEQQKKL 734

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F        RR  G GLGL+I   F  + GG +++ S+    +T    +P
Sbjct: 735 FKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVSTPGQGSTFTVSLP 787


>gi|229016834|ref|ZP_04173762.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
 gi|229023039|ref|ZP_04179554.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228738262|gb|EEL88743.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228744395|gb|EEL94469.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
          Length = 591

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 171/367 (46%), Gaps = 29/367 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGAVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++ V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L    +N    F V+++G
Sbjct: 463 QLTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTENSGLTFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + IPE+    +F+RF        R    G GLGL+I ++ +  H G +S+SS     TT 
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTF 582

Query: 785 NCRIPSK 791
           +  +P++
Sbjct: 583 SVYLPNR 589


>gi|225175738|ref|ZP_03729731.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168662|gb|EEG77463.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 535

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 148/280 (52%), Gaps = 4/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK L    E+++D  L  ++      +T    V      + +R L++ NE L +++ +K+
Sbjct: 244 RKKLLEPYEVIND--LYQNLDKKVKVRTRELEVANMRLAQGQRRLSQLNEKLGESNRLKS 301

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F   +++ELR+PLT+++ F +L+     G +  +Q + +  I  S+  L+ LVNDILD+
Sbjct: 302 EFTATMTHELRTPLTSVVAFCELMLDEVSGPITPEQRENLLDIKTSAQQLMVLVNDILDM 361

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A  +AG ++++   + LND+L  V++S++   H+N I + V     L     DR R+ Q+
Sbjct: 362 AKHEAGSLRIHKEKVDLNDVLRMVRRSMSAIAHQNGISLDVEK-TTLPFVYGDRDRIQQM 420

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +++NA+ F+  G  + + A  +    I SV++ G  I  ++   +F +F    H  Q
Sbjct: 421 VVNLVANAIKFTKDGGRITVSANGEGDFAIISVQDTGIGISPELLPHIFEKFRQGDHPKQ 480

Query: 751 RR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           RR G GLGL++V++   L  G V++ S     +     +P
Sbjct: 481 RRKGTGLGLALVKTLAELQDGKVAVDSEVGEGSCFKIYLP 520


>gi|218439784|ref|YP_002378113.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172512|gb|ACK71245.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1478

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 120/651 (18%), Positives = 243/651 (37%), Gaps = 50/651 (7%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ-AGDILWANI-----SYKKNTETEG 230
            ++ +       L N     ++  +  +  +W+ D  +G+++W+N          NT+   
Sbjct: 691  DITDYKQVVTDLKNRQEQLRLAVEGANLGMWNYDLLSGELIWSNRCKKMFGIAANTQISY 750

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFG- 287
             VF  A+    +L  ++  +  IS         E  +    G+    +       N+ G 
Sbjct: 751  EVFINALHPEDRLRVDQAVQHSISQRQNYDI--EMRTQWPDGSLHWVRSIGHAYYNNEGV 808

Query: 288  ---EAGIAIDVSKEITVNDQLTHTYEIL---HNLT-VAIAIFDQNRYLQFHNRSFVELWE 340
                AG+ +D++ +    + L  + E       L+     +    R     N+S      
Sbjct: 809  AHRMAGVVLDITGQKQAQEALRKSEERFRVAQELSLDGFTVLKSIR-----NQSGEI--- 860

Query: 341  IDLAFLATNPSNDELLEFL-------RSANKLPEQLNWKTWKENIFSVYKSSETHK-DTW 392
            ID  +   NP+  ++L          R    LP+  +     +    V +++ +H  + +
Sbjct: 861  IDFEWTYVNPTAAKILRSQINDLIGKRLLEILPDNQSNSELFKRYVQVVETANSHDLELY 920

Query: 393  HLPNGQTLHVI-VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            +  +        +      G    F ++T +   E       +     +     G     
Sbjct: 921  YDSDEIVGWFRNMAVKLEDGVAVSFSDITERKQAEETLRENEQRLNIALKTAKLGSWHLD 980

Query: 452  PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
                   ++  +++ +    +     T +  +     R Y             T ++ E 
Sbjct: 981  LSTMELFTSAQYKANFGLATDADLSYTTLFRLIHPEDRGYVSQMVQHAINT-HTDYEAEY 1039

Query: 512  KSL--QGTLELL-SDSVLEYSIIPLP------NAQTMLTFVNVTDSVRAERALTEKNEAL 562
            +S+   G++  + S   + YS   +P      N           +  R         E  
Sbjct: 1040 RSIWPDGSIHWINSQGCVLYSNTGIPLRIVGVNLDITGRKQAQEEQKRLLEREKLAREEA 1099

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             + + IK+ F+  +S+ELRSPL  I+G+  LL++      N  Q++ +E I  ++ +   
Sbjct: 1100 ERVNRIKDEFLAVLSHELRSPLNPILGWAQLLRSGSFDKAN--QNKALEIIERNAKLQAQ 1157

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            L+ D+LD++ +  G + LN + + L   +    +++       +I IK      +     
Sbjct: 1158 LIEDLLDVSRILRGKLSLNVTQLNLFFPIQGAIETVRLSAQAKSIEIKTNLATDVVQISG 1217

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            D  R+ QI   +LSNA+ F+ +G  + +   + N     +VK++G  I       VF  F
Sbjct: 1218 DAGRIQQIVWNLLSNAIKFTPEGGQIEIGLEQVNHQAQITVKDSGKGIDPQFLPHVFEHF 1277

Query: 743  VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
                    R   G+GLGL+IV   + +HGG VS  S+ +   +T   + P 
Sbjct: 1278 RQADSTTTRKFGGLGLGLAIVRHLVEMHGGTVSAYSAGENQGSTFIVQFPL 1328



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 104/283 (36%), Gaps = 34/283 (12%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKR 251
             F++   + +  ++ ++Q    LW       +T    +  ++ IG+S   LF +   ++
Sbjct: 129 ERFRLALSNSNLCIFQQNQDLKYLWI------HTSEGQVSPEEIIGKSDYDLFSQPEAQQ 182

Query: 252 MI----SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITV 301
           +      +    +   E V      N   Y++     +       G   +A+D+++    
Sbjct: 183 LTAIKKRAIHSRQPLREEVCLTFGANPHYYELFIQPIASFDEQICGITCVAVDITERKHF 242

Query: 302 NDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
             QL      + +IL +LT A    DQ     + NR F E+ E     L      D   E
Sbjct: 243 EQQLHSATQQSSQILESLTDAFFALDQTWQFTYVNRHFEEISEHTREDLLGECIWDVFPE 302

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            +R +    E      +++N+    ++             Q +      +  G  ++  +
Sbjct: 303 -MRQSVFYEEFS--LVFEQNLPISIEAINPINPE------QWIEARAYPSAEGLCVYW-Q 352

Query: 418 NLTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIK 457
           ++T++ + ET+ N L++ +       + + + +A       I 
Sbjct: 353 DITLRKETETERNQLLEREKTARAAAELMQQRLAFLDTASTIL 395



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 137/400 (34%), Gaps = 45/400 (11%)

Query: 303 DQLTHTYEILHNLTVAIAIF-DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
           D LT    ++  +   +AI   +   +   N    ++       L   P + ELLE    
Sbjct: 570 DSLTLLEAVIQQMPAGLAIVESKTGRIILQNDQLRQI-------LGNRPLSTELLENYHH 622

Query: 362 ANKL--PEQLNWKTWKENIFSVYKSSETHKDTWHL---PNGQTLHVIVTSNPRGGT---- 412
             ++  P    +K  +  +    +  E  K    L    +G    ++V S+P   +    
Sbjct: 623 LYEVYHPNGHPYKIEELPLMRSRQQGEVVKSEEMLLVWTDGTQKTLLVDSSPIVNSQGEI 682

Query: 413 ---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWK 468
              +    ++T    + T      +     ++  + G+  +    G +  SN   +    
Sbjct: 683 EVAVATIYDITDYKQVVTDLKNRQEQLRLAVEGANLGMWNYDLLSGELIWSNRCKKMFGI 742

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
               ++S    I  +        +++    +        +   +   G+L  +      Y
Sbjct: 743 AANTQISYEVFINALHPEDRLRVDQAVQHSISQRQNYDIEMRTQWPDGSLHWVRSIGHAY 802

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                   +     +++T   +A+ AL +  E           F   V+ EL     ++ 
Sbjct: 803 YNNEGVAHRMAGVVLDITGQKQAQEALRKSEE----------RF--RVAQEL-----SLD 845

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GFT +LK+ +  S      ++      ++ IL + +ND+     +   ++++       +
Sbjct: 846 GFT-VLKSIRNQSGEIIDFEWTYVNPTAAKILRSQINDL-----IGKRLLEILPDNQSNS 899

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +L     Q + T  + +++ +   SD  +G F     +L 
Sbjct: 900 ELFKRYVQVVET-ANSHDLELYYDSDEIVGWFRNMAVKLE 938


>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 967

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 171/421 (40%), Gaps = 35/421 (8%)

Query: 380 SVYKSSETHKDTWHLPNG--QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
            ++K  E      HL NG    L  +   N   G I + +++             V+ + 
Sbjct: 129 DIFKQLEKEGFVSHLFNGYIHILRPVFAQNVLVGAIHLVDDM-----------QQVRNRL 177

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-AATCSRYYNESDG 496
            T   +   + V      + LSN + +   +     L     IR +          +  G
Sbjct: 178 HTYYIVVAFIVVITLMVVLLLSNKSQKIFTR---PLLELMQSIREVTIKKNYDVRVKKQG 234

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-- 554
            D F  +I  F+D    +        D  L+     L     + T          E    
Sbjct: 235 RDEFGTLIDCFNDMIGEIHA-----RDEDLKMYSADLEKRVKLRTADLSQAKKALEAMVV 289

Query: 555 -LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E   +A   K+ F+ ++S+E+R+P+  ++G  +LL  +    L  +Q ++ + I
Sbjct: 290 TLEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMET---DLTEEQRRFSKTI 346

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S + LL ++NDILD + ++AG ++L      L  L+++V Q +A++ H   + + V+ 
Sbjct: 347 QSSGSSLLAIINDILDFSKIEAGKLELETINFNLQILIDDVMQMLASRAHAKQLELAVLI 406

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
             +   F+  D  R  Q+ + ++ NA+ F+ +G  V+  A   +          +++ G 
Sbjct: 407 PPETCIFLRGDPTRFRQVLTNLVGNAIKFTKQGEVVVQVATTVSDQNRVKLHVLIRDTGI 466

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I +   + +F+ F        R   G GLGL+I +  + L GG +   S     +T + 
Sbjct: 467 GISQQDLQRLFSPFSQADGSTTRKYGGTGLGLAISKEIVALMGGDLHCESEPGKGSTFSF 526

Query: 787 R 787
            
Sbjct: 527 T 527


>gi|148254533|ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146406706|gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding
           domain (C-term) [Bradyrhizobium sp. BTAi1]
          Length = 774

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/410 (24%), Positives = 183/410 (44%), Gaps = 34/410 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I +  ++T Q  L  K         + I+ +SE   ++  + R+ L N  F+ L K  +
Sbjct: 353 LIGIAVDITEQKSLAEKTVEADLRLRDAIETISEAFVLWDANNRLVLCNSHFQKLHKLPD 412

Query: 472 NRLSPGTHIRNIAA------TCSRYYNESDGWDLFAAIITSFDD-------ERKSLQGTL 518
           + + PGT    +          +R ++ S             DD       ER++  G  
Sbjct: 413 SAVIPGTSYETVIEVGKMPEIRTRLHDHSQQSPGARTFEAQLDDGSWLHISERRTKDGGY 472

Query: 519 ELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             +                +D  L  ++I L  +Q+ L    +  +  AE+  +++    
Sbjct: 473 VSVGTDITRIKEHEQKLVDNDLRLRATVIDLQRSQSALERQAIELADLAEKY-SQEKTRA 531

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621
            +A++ K+ F+ ++S+ELR+PL  IIGF++++ +   GSL + K  +Y   I  S   LL
Sbjct: 532 EEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLL 591

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD++ ++AG MKL+   + L   L E  + ++ +  +  + +    +G +   V
Sbjct: 592 EVINDILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKRLVLDADIEGNIP-IV 650

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR+   QI   +LSNA+ F+ +G  V +++   +   +  + + G  IP      +   
Sbjct: 651 ADRRATKQIMVNLLSNAVKFTPEGGRVTMRSRVFDDKVVLIIADTGIGIPAQSLARLGRP 710

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F            G GLGL+I  S   LHGG + + S  E  T +   +P
Sbjct: 711 FEQVESQMTKTYHGSGLGLAIARSLTQLHGGSMRLRSRIESGTVVRVTLP 760



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 88/248 (35%), Gaps = 32/248 (12%)

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKE------EIKKRMISSSALEKNFCETV 266
           G I W+N  + +    +        GE   L          I  ++++    + +    +
Sbjct: 268 GRIFWSNSMF-EMLGLDNRTDLLTFGEVNALVNSDDIDLFAIADQLVAGDIHQIDQSFRM 326

Query: 267 STLEHGNNKSYKIV--------RVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHN 314
               H       +            +     GIA+D++++ ++ ++         + +  
Sbjct: 327 R---HTEGHWIWLRVRCELSQGTTASGLHLIGIAVDITEQKSLAEKTVEADLRLRDAIET 383

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           ++ A  ++D N  L   N  F +L ++  + +    S + ++E      K+PE       
Sbjct: 384 ISEAFVLWDANNRLVLCNSHFQKLHKLPDSAVIPGTSYETVIEV----GKMPEIRTRLHD 439

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-NTLV 433
                   ++ E   D     +G  LH+       GG + +  ++T   + E K  +  +
Sbjct: 440 HSQQSPGARTFEAQLD-----DGSWLHISERRTKDGGYVSVGTDITRIKEHEQKLVDNDL 494

Query: 434 KVQGETID 441
           +++   ID
Sbjct: 495 RLRATVID 502


>gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW]
 gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW]
          Length = 1057

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 120/741 (16%), Positives = 242/741 (32%), Gaps = 108/741 (14%)

Query: 119 LKFHHYIK-LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
           +        L+    + R  G  F+          +  E R         ++ +  + + 
Sbjct: 204 IPPEKAEAWLTDRLHRHRNPGPPFETALGKDRIIRV-AEHRTGAGGHVSLVVDVTALRTS 262

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK--------KNTETE 229
                         I + +                 D+L+AN S+         +     
Sbjct: 263 ERRLRDLIDGSLQGIVIHRGF---------------DVLYANQSFAGIFGFDTAEALLEG 307

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI----VRVLNS 285
           G +      E++ L +  + + +    + +++    +     G     ++    V  L+ 
Sbjct: 308 GSLDFIIPPENKGLARRSLDRLLREGGSFQRSRVAALRR--DGTRIWIEVAVRSVDWLDG 365

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--------IFDQNRYLQFHNRSFVE 337
                I +DV++     D L  +     +L   +                  + +    E
Sbjct: 366 PALQSIVMDVTERARAEDALAASEARFRDLVSTVPGLVYQWYERTGGVHGYSYVSPRSRE 425

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVY--KSSETHKDTWHL 394
           ++ I               + +R  + LP    +   W+  I      ++  + +  + L
Sbjct: 426 MYGIAPE------------DLVRDWSLLPIHPEDQDRWRRTIADAVLRETDWSFEGRFIL 473

Query: 395 PNGQTLHVIVTSNP------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           P+G        S P            +  ++  Q   E +  +   +   +      G  
Sbjct: 474 PDGSVRWWRAVSRPVRVGPDEVRFNGIVIDIEEQKRAEAELQSREAMLRYSASLAGLGYW 533

Query: 449 VFGPDGRI---KLSNPAFRSLWK--------------------TEENRLSPGTHIRNIAA 485
           V+    R+      +P   ++                        E+R    TH  ++A 
Sbjct: 534 VWDR--RLAWTTYCSPELAAIRGVTVEEYLETLGSFEQQLRWIQPEDRDYYRTHALDVAR 591

Query: 486 TCS------RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +        R             +     D+R  L   +  L D                
Sbjct: 592 SRRTYVVEYRILRPDGQTRYVREVGGPVYDDRGELVKYVGALQDITDRKQRELELEEARD 651

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                 ++       L    +A   A   K+ F+  +S+ELR+P+T +IG  DLL  +  
Sbjct: 652 RLERQASEMTALALELQTARDAAEAASRAKSRFLAVMSHELRTPMTGVIGMIDLLLGT-- 709

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            ++ S Q +Y+E + +S+  LL ++NDILD + ++AG + +    + L  LL++V    A
Sbjct: 710 -TVTSDQRRYLETLHSSADALLVVLNDILDFSKIEAGQLVIEAIPVRLQALLDDVIDLFA 768

Query: 660 TKMHENNIRIKVISDGK------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               +  + ++V    +            D  RL Q+   ++ NA+ F+  GS + L+A 
Sbjct: 769 PAASQKGVELRVRQPERRQKNRLPKELTGDPTRLRQVLMNLVGNAVKFTPAGS-IELRAE 827

Query: 714 RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
               D       F V++ G  IP D+   +F  F        RR  G GLGL+I +  + 
Sbjct: 828 AQREDGGTWLLRFEVEDTGIGIPPDVVPMLFESFTQADASTTRRFGGTGLGLAICKRLVT 887

Query: 767 LHGGHVSISSSDEGVTTINCR 787
           + GG + + S     +     
Sbjct: 888 MMGGEIGVRSEPRRGSVFWFT 908



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 90/257 (35%), Gaps = 11/257 (4%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
             +  TH  + L  L   + ++D    +   N+ F++ +     ++    + + ++  L 
Sbjct: 138 AQEAATHLIDGLERLKDGLILYDAEDRVMLFNQRFLDFFPELAPYVRPGITFEAVMRNLM 197

Query: 361 SANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           ++  LP      + W  +    +++     +T    + + + V       GG + +  ++
Sbjct: 198 ASGTLPIPPEKAEAWLTDRLHRHRNPGPPFETALGKD-RIIRVAEHRTGAGGHVSLVVDV 256

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGT 478
           T     E +   L       ID   +G+ V      +  +N +F  ++  +    L  G 
Sbjct: 257 TALRTSERRLRDL-------IDGSLQGI-VIHRGFDVLYANQSFAGIFGFDTAEALLEGG 308

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +  I    ++         L     +       +L+     +   V   S+  L     
Sbjct: 309 SLDFIIPPENKGLARRSLDRLLREGGSFQRSRVAALRRDGTRIWIEVAVRSVDWLDGPAL 368

Query: 539 MLTFVNVTDSVRAERAL 555
               ++VT+  RAE AL
Sbjct: 369 QSIVMDVTERARAEDAL 385


>gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 584

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 172/394 (43%), Gaps = 27/394 (6%)

Query: 401 HVIVTSNPRGGTIWMFEN-LTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKL 458
            + V S    G +    N ++ +++ + +  +  K Q    ++ + EGV V   D  + L
Sbjct: 212 RIAVQSQDEMGELAQVMNEMSGRIERQLELISSEKNQLDAILNGMGEGVMVTDRDAVVTL 271

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N AF S++ T       G  +  I              DL+AA   +    R+     +
Sbjct: 272 VNHAFCSMFATGAEV--QGRPLLEITR----------HPDLYAACREALS-ARQERHQEI 318

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L     +    +PL     +   V V   + A +          + ++I+  FV +VS+
Sbjct: 319 ALAGGKTVLVHWVPLSEGDGLQGAVAVFHDISAFK----------RVEKIRRDFVANVSH 368

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+T I G+ + L +  L +   +  +++  I   +  L  LV D+L L+ +++G M
Sbjct: 369 ELRTPVTVIKGYAETLLSGALAADPQRAERFLLIIQNHADRLSGLVRDLLTLSELESGEM 428

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            +    + L++ + +    +  +  E  ++++  +     +  ADR RL Q+   +L NA
Sbjct: 429 GMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRLEQVLINLLDNA 488

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + +S  G +V ++ AR+      SV+++G  IPE     +F RF            G GL
Sbjct: 489 IKYSETGKSVGVETAREGDLVRVSVRDSGIGIPEKDLPRLFERFYRVDEARSRDNGGTGL 548

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLSIV+  +  HGG + + S     +  +  +P 
Sbjct: 549 GLSIVKHIVQAHGGTLDVKSEQGKGSVFSFTLPL 582



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 40/242 (16%)

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           D+L+    +         +    + ++++  +  +   +  +          +S L   N
Sbjct: 134 DMLYVAAPFADRGVVRLALPLSELEQAKERLRRSLGAGLAVAVLASMLLSYFLSNLNSRN 193

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVND---------------------QLTHTYEIL 312
            +   I       GE G  I V  +  + +                     +      IL
Sbjct: 194 LRRLAIGAQRIGRGEFGARIAVQSQDEMGELAQVMNEMSGRIERQLELISSEKNQLDAIL 253

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
           + +   + + D++  +   N +F  ++    A +   P    LLE  R         +  
Sbjct: 254 NGMGEGVMVTDRDAVVTLVNHAFCSMFA-TGAEVQGRP----LLEITR-------HPDLY 301

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETK 428
                  S     E H++   L  G+T+ V       G    G + +F +++    +E  
Sbjct: 302 AACREALSA--RQERHQEI-ALAGGKTVLVHWVPLSEGDGLQGAVAVFHDISAFKRVEKI 358

Query: 429 YN 430
             
Sbjct: 359 RR 360


>gi|86132863|ref|ZP_01051454.1| two-component system sensor histidine kinase/response regulator
            [Dokdonia donghaensis MED134]
 gi|85816569|gb|EAQ37756.1| two-component system sensor histidine kinase/response regulator
            [Dokdonia donghaensis MED134]
          Length = 1216

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 126/693 (18%), Positives = 260/693 (37%), Gaps = 65/693 (9%)

Query: 145  AETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
                N   I ++G             +        E     ++     + F  + D++  
Sbjct: 403  VVGPNGNVISLKGTA---------QDITEQRLLDQELIRAKEEAEKSKNHFNNIIDNIGD 453

Query: 205  LVWHRDQAGDILWANISY-----KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE 259
             V+ +D    +L  N ++         +  G    + + +  +    EI +++IS     
Sbjct: 454  PVFVKDDQSRLLVVNDAFCKLFGFDRLDIIGKTLAEDVTKEERDAFLEIDRKLISDGIES 513

Query: 260  KNFCETVSTLEHGNNKSYKIVRVLNSFGEA---GIAIDVSKE-----------ITVNDQL 305
             N              S +  R +++ GE    G+  D+++                   
Sbjct: 514  INEESITIRDGETQRISTRKTRFIDNEGEVFIVGVIHDITERFKTETIIKEAKERAEANE 573

Query: 306  THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT------NPSNDELLEFL 359
                 ++ NL   + +   +  +   N    E+  ID   +        NP    L +  
Sbjct: 574  RRFRILMQNLEAGVVVHAPDTSIVQCNDRASEILSIDQEAIQDKALRYVNPKLINLDKSP 633

Query: 360  RSANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             + ++ P     +T KE+I +           +  W   NG    V+         + +F
Sbjct: 634  LALSEYPVNKIART-KESINNQIIGLLGDNDKEIKWTTLNG--FPVLNDVGEITEIVTVF 690

Query: 417  ENLTVQVDLETKYNTLVKVQGETIDHLSE-------GVAVFGPDGRIKLSNPAFRSLWKT 469
             ++T Q   E        +  +T + LS+       G  +  P G     +    ++W  
Sbjct: 691  IDITEQRQNEKDKLKAKLLLDKTENELSDAQALAKIGSWLVRPSGMKMEWSKEMYNIWG- 749

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDG--WDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                   G  + +  +   R + +      +     IT  +      +  +       + 
Sbjct: 750  ----FDYGKKLPDYESVVERVHPDDMELLKNAIDKAITKGEPYNIEYRICIPNRPQKTIR 805

Query: 528  YSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                P+      +     T  ++T+  +    L    E   ++D +K++F+ ++S+E+R+
Sbjct: 806  AICQPVMGEDGKVINLAGTNQDITEQKKLSGELISAKEKAEESDRLKSAFLANLSHEMRT 865

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            P+  I+GF++LL+   +     K+  Y+E +      LL+ +++I+D++ +++ I+ +  
Sbjct: 866  PMNGILGFSELLRRKNIS--EEKKDIYLELLEKEGHRLLSFISNIVDISKIESNIINIEN 923

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMD 700
            S + LN L++++      K+   NI+++V         +   D  +L+QI S +L NA+ 
Sbjct: 924  SHLNLNSLIDDLYSKYQLKLEGTNIKLEVNKALSDTDSAIETDENKLVQILSNLLENAIK 983

Query: 701  FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLS 759
            F+ +GS +            F VK++G  I E+  K++F+RF           GVGLGLS
Sbjct: 984  FTKEGS-IEFGYTLKEEILQFYVKDSGIGIDEEEQKNIFDRFTQGKREQTHNLGVGLGLS 1042

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            IV+  I +  G V I S     +     IP K+
Sbjct: 1043 IVKGLIKILNGSVWIESKIGEGSIFYFTIPYKQ 1075


>gi|197118913|ref|YP_002139340.1| sensor histidine kinase lipoprotein [Geobacter bemidjiensis Bem]
 gi|197088273|gb|ACH39544.1| sensor histidine kinase lipoprotein, CHASE, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 829

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/524 (18%), Positives = 192/524 (36%), Gaps = 42/524 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   + +   +   +     + +A+   +  L   N ++ ++    +A        +  
Sbjct: 304 ERTAALKEIENYNRTLFELSPIGLALCSMDGVLVDVNTAYADILGRTVAETLGLSYWEIT 363

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT----LHVIVTSNPRGG 411
            E      ++         +            ++  +   +G+     LH  +    +  
Sbjct: 364 PEKYEDQERM---------RLERLETVGFYGPYEKEYCRRDGRLVPVRLHGRIIERNKAR 414

Query: 412 TIWM-FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            IW   E++T +   E +           ID L   V ++  +      N  F  +    
Sbjct: 415 FIWSSVEDITDRKHAEAEIKREHAFSEALIDSLPGVVYLYDQEMNFLRWNKNFERVTGYA 474

Query: 471 ENRLSPGTHIRNIAATCSRYY----------------------NESDGWDLFAAIITSFD 508
              +     +                                 + S     F  + T  D
Sbjct: 475 PEEILRLQPLDFFVEKDKALLQSRIQEVFVKGASNVEAGFVAKDGSSAPYFFTGLRTEID 534

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +   +   +++     LE  +  L             +       L   NE L++ D +
Sbjct: 535 GKTCLIGIGIDISDRKRLEEELTALNLNLETRVAERTQELNEKSAQLAAANEKLKEVDRL 594

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+ELR+PL ++IG++ ++    LG L   Q + +  +  +   LL+L+ND++
Sbjct: 595 KSMFIASMSHELRTPLNSVIGYSSIILNEWLGPLQPTQKENLAIVLRAGKHLLSLINDVI 654

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG ++++     L DL+ E  Q +  ++    +   V         +ADR+RLL
Sbjct: 655 DVSKIEAGQIEVHNEEFDLFDLVQEAAQQLEPEIRGKGLAFPVT--NIHLQLLADRRRLL 712

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q    +LSNAM ++ +GS + L    D      SV ++G  I E   K VF  F      
Sbjct: 713 QAVLNLLSNAMKYTVEGS-IQLAVNFDGTWAEISVADSGIGISEQDAKLVFQPFRRLDSS 771

Query: 749 --GQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIP 789
             G   G GLGL +    +  + GG ++  S+    +T   RIP
Sbjct: 772 LRGTVSGTGLGLYLTNKLVREVLGGTITFVSAVGQGSTFTIRIP 815



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 90/287 (31%), Gaps = 26/287 (9%)

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
            AF+     D           +   L    +  + LF+     +      G ++  N +Y
Sbjct: 284 LAFIVFQIYDRQRRLRNAVQERTAALKEIENYNRTLFELSPIGLALCSMDGVLVDVNTAY 343

Query: 223 KKN-----TETEGIVFQKAIGESRKLFKEEIKKRMISS------SALEKNFCETVSTLEH 271
                    ET G+ + +   E  +   ++ + R+            EK +C     L  
Sbjct: 344 ADILGRTVAETLGLSYWEITPEKYE---DQERMRLERLETVGFYGPYEKEYCRRDGRLVP 400

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
                 +I+    +        D++     E  +  +   +  ++ +L   + ++DQ   
Sbjct: 401 -VRLHGRIIERNKARFIWSSVEDITDRKHAEAEIKREHAFSEALIDSLPGVVYLYDQEMN 459

Query: 328 LQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
               N++F  +        L   P     L+F    +K   Q   +       S  ++  
Sbjct: 460 FLRWNKNFERVTGYAPEEILRLQP-----LDFFVEKDKALLQSRIQEVFVKGASNVEAGF 514

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
             KD    P   T  +    + +   I +  +++ +  LE +   L 
Sbjct: 515 VAKDGSSAPYFFTG-LRTEIDGKTCLIGIGIDISDRKRLEEELTALN 560


>gi|307307214|ref|ZP_07586951.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|306910269|gb|EFN40701.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1139

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 99/509 (19%), Positives = 204/509 (40%), Gaps = 27/509 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++   +         IL +      I +    +   N +   L+      L        L
Sbjct: 241 ARTKALEAANIRLNTILDSAVDGFVIINDKGTITDINPAISRLFGYAHNELIGQNVAIFL 300

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRG 410
              +RS++        +T    I    +     +      +GQ   +     ++  + + 
Sbjct: 301 PFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQR-----KDGQLFPIALSVSLMKIDNKV 355

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             I + ++L+     E        V   T+    + +     DGR+   N A   L+   
Sbjct: 356 MFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLITIDIDGRVVEFNLAATRLFGYS 415

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYS 529
            +  + G ++  +    S++ +   G + +    +    ++R  L  T +  ++  +E  
Sbjct: 416 RHE-AIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIINKRIELLATCKAGNEIPIELE 474

Query: 530 IIPLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           ++P+     +L      ++++   +E  L    E     +++K+ F+  +S+E+RSPL  
Sbjct: 475 VVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELGNKVKSRFLATMSHEIRSPLNA 534

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G  +LL  SK   LN +Q  +      + + LLN +NDILD + ++AG M L  +   
Sbjct: 535 ILGGVELLLHSK---LNKEQRIHANITREAGSALLNTINDILDFSKIEAGQMVLESNEFE 591

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
            + L+ +V Q +  K ++  +++    D  +  + + DRQRL Q+   ++ NA+ FS  G
Sbjct: 592 PDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQVIHNLVDNAIKFSVSG 651

Query: 706 STVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
            T+ ++    +           V ++G  I E+    +F  F    + H    +G GLGL
Sbjct: 652 -TITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQVHDTHNTNYKGTGLGL 710

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR 787
           +I    I + GG + + S  +        
Sbjct: 711 AICRELITMMGGEIELESELDKGCCFTFY 739


>gi|302382337|ref|YP_003818160.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192965|gb|ADL00537.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 915

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 119/662 (17%), Positives = 240/662 (36%), Gaps = 61/662 (9%)

Query: 166 LRILS-LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYK 223
           LR+L+ L G   +   T  +  K ++ + + + +        WH D   G I W++  ++
Sbjct: 125 LRLLARLAGQEIDRTRTLRQQAKHTDMLEMSEAMAGVGH---WHCDLTTGVITWSDEVFR 181

Query: 224 ---KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI- 279
                  +    F     +     +         +    + +   +    HG  +  +  
Sbjct: 182 IHGLEPGSVNPTFHSLSAQYHPEDQAAGWALAQRARETGEGYDRLMRLTRHGEERVTRTQ 241

Query: 280 VRVLNSFGEAGIAI-----DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
            RV      A +A+     DV++        T   E L  +  A+A              
Sbjct: 242 ARVERDETGAVVALFGVFQDVTEAARATRAQTELVETLG-MAEALA-------------- 286

Query: 335 FVELWEIDLAFLATNPSND---------ELLE-FLRSANKLPEQLNWKTWKENIFSVYKS 384
            V  W +D+A      S++         E  +  L  A       +      +     ++
Sbjct: 287 GVGCWRLDVATGRVTWSDEVYRIHGKTRETFDPSLHDAVSCYHPDDRAAVAASCDEAIRT 346

Query: 385 SETHKDTWH--LPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKV 435
            +  +        +G+   V     P             +F+++T  V  + +       
Sbjct: 347 GDAKEFQLRIVREDGEERIVRSRCRPERDDAGVTTALFGVFQDVTDSVRSQKRIEASEAR 406

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL-----SPGTHIRNIAATCSRY 490
                D  S+ +  +G DG I+  +P+  +        L     +      ++ A   R+
Sbjct: 407 YRLLADRASDVIVTYGVDGLIQYISPSVEAATGIAPGDLVGRPVTHLILDEDVPALSQRF 466

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                       +        +   G +  +               Q      ++ ++ R
Sbjct: 467 REMVRAGP--GTVQPGVVYRARMASGEIRWMEARTTLIRDDHGRVVQFHDVVRDINETKR 524

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  L    +    A   K+ F+ ++S+ELR+PLT++IGF+ LL++S+  +L + + +Y 
Sbjct: 525 LEDELIAARDVAEAAARSKSEFLANMSHELRTPLTSVIGFSGLLQSSE--ALPAAERRYA 582

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+ SS  LL+++NDILD + ++A  + L+        +       + T+     + + 
Sbjct: 583 DRIATSSEALLSVINDILDYSKLEADAVGLDPVAFDPTAMARATASIVETQCEAKGLSLV 642

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +   L  + + D  RL Q+    LSNA+ F++ G  + L     +G    +V ++G  
Sbjct: 643 ITTADDLPGAIMGDEGRLRQVTLNFLSNAVKFTNTGE-IRLDVGSVDGRMRVAVTDSGIG 701

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  D   ++F RF        R   G GLGL+I    I + GG +  +S     +T    
Sbjct: 702 VAADKIDALFERFTQADASTTRVYGGTGLGLAICRRLIEMMGGEIGATSRPGHGSTFWFE 761

Query: 788 IP 789
           +P
Sbjct: 762 VP 763


>gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 597

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/419 (21%), Positives = 173/419 (41%), Gaps = 33/419 (7%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I S  +            N +T   I+T++  G     F  +   ++      N   + 
Sbjct: 199 RITSPLRKMRKASLEVAKGNFETKIPILTNDEIGLLATAFNKMARALNTNLNALNQEKEQ 258

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV     +G + ++NP                           + Y   +
Sbjct: 259 LSRILSSMADGVITLDREGAVMVTNPPANEFIGAWLY---------------EQEYEVEE 303

Query: 496 GWDLFAAIITSFD---DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
             +L   +   FD    E K   G +++   S     + PL + Q +   V V   +  E
Sbjct: 304 SGELPRELQHLFDLVVQEEKEQMGEVDVQGRSW-AILMTPLYDQQHVRGAVAVLRDMTEE 362

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R            D+++  F+ +VS+ELR+P++ + G+++ +    + S   ++++  + 
Sbjct: 363 RL----------HDKLRKDFIANVSHELRTPISMLQGYSEAIIDG-IASSEEEKTELAQI 411

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   S  +  LVN++LDLA ++AG ++LN  TI   D    V +       E+ I++   
Sbjct: 412 IYDESLRMGRLVNELLDLARMEAGHIQLNVETISFTDFTKRVLRKFQGIAKEHGIKLSGD 471

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +  +    AD  R+ Q+ + ++ NA+  + +G  V L+    +     ++++ G  I E
Sbjct: 472 IEENIQYVYADEDRIEQVLTNLIDNAIRHTPEGGEVTLQMEVLDQGVKVNIQDTGIGISE 531

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    VF RF        R   G GLGL+IV++ +  H G VS+ S     TT +  +P
Sbjct: 532 EDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVHSKLNEGTTFSFFLP 590


>gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1402

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 101/548 (18%), Positives = 201/548 (36%), Gaps = 77/548 (14%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  +  Q+     ++ + + AI     +  +   N +   ++             D  +
Sbjct: 380 REEVLRKQME-LAALVSHSSEAIVAETPDGRITLWNPAAEAMFGYTAE---EAIDQDLTM 435

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------R 409
                A  +PE        ++  +   ++ +   T H  +G  +HV+ + +P        
Sbjct: 436 LLAPQAYAMPE-------IDHADAALAANASAAQTMHHRDGHQVHVLASKSPIIESEGTL 488

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK------------------VQGETIDHLSEGVAVFG 451
            G    F +++ +V    +   L                    +Q   + H    +    
Sbjct: 489 SGHSHFFRDISDRVRSHQRSIDLNASLEHQVAERTGELVKFSVLQRAILAHAGYAIIATD 548

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIIT- 505
             G + L NPA   +       +                  +R   +  G  +   +   
Sbjct: 549 SSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLEAI 608

Query: 506 -----------------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                            S D  R  +  TL  L D   +           +   V++T+ 
Sbjct: 609 AALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVI-------GYLGVAVDLTEQ 661

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L      
Sbjct: 662 KLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---LPGAAQD 718

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  S+  LL ++NDILD + ++AG + L  +   LN L + + + + + +    + 
Sbjct: 719 MVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVE 778

Query: 669 IKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFS 722
           + V          + D  R+ Q+   ++ NA+ F+ +G  V+      +GD      +FS
Sbjct: 779 MIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFS 838

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG + + S    
Sbjct: 839 VRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGR 898

Query: 781 VTTINCRI 788
            +     I
Sbjct: 899 GSEFYFVI 906



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 91/304 (29%), Gaps = 50/304 (16%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L+ +++         L       +      G I   N + +      G   ++AI +   
Sbjct: 378 LRREEVLRKQMELAALVSHSSEAIVAETPDGRITLWNPAAEAMF---GYTAEEAIDQDLT 434

Query: 243 LFKEEIK---KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GEAGI 291
           +           +  + A          T+ H +     ++   +          G +  
Sbjct: 435 MLLAPQAYAMPEIDHADAALAANASAAQTMHHRDGHQVHVLASKSPIIESEGTLSGHSHF 494

Query: 292 AIDVSKEITVNDQ---LTHTYE-------------------ILHNLTVAIAIFDQNRYLQ 329
             D+S  +  + +   L  + E                   IL +   AI   D + ++ 
Sbjct: 495 FRDISDRVRSHQRSIDLNASLEHQVAERTGELVKFSVLQRAILAHAGYAIIATDSSGFVT 554

Query: 330 FHNRSFVELWEIDLAFLATNPS------NDELLEFLRS-ANKLPEQLNWKTWKENIFSVY 382
             N +  ++   + A +            DEL E  R  A++    +          +  
Sbjct: 555 LFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLEAIAALTSL 614

Query: 383 KSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             S+T + T+   +G+ L V++T        +   G + +  +LT Q   E +    +  
Sbjct: 615 GRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDA 674

Query: 436 QGET 439
               
Sbjct: 675 AKSA 678


>gi|325280822|ref|YP_004253364.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312631|gb|ADY33184.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
          Length = 936

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/656 (19%), Positives = 258/656 (39%), Gaps = 56/656 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF--------------LVWHRDQA 212
              SL  I +   E     ++        + L+  +                 V      
Sbjct: 289 WFTSLVNIINIYIELQKSRQEAQTERDYLQNLYKHMPLGYLRARILYDQQQNPV-----D 343

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
                AN++ KK T        +A           ++   +++ +  K++ +    +   
Sbjct: 344 LLFTDANLAAKKITGKSNFNGLRASSLGLDFSSNLLQ---LTTLSPNKDYLDDTHFVSRI 400

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYL 328
           N   + I  +        +  D+++    +  L  + +IL     NL   I ++D+N +L
Sbjct: 401 NKYFHFISYMTRPDEVIYLFSDITETFNTHQALDRSEKILRNIYDNLPAGIELYDKNGFL 460

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI--FSVYKSSE 386
                  ++L   D+           L   L     LP  +     ++    F +     
Sbjct: 461 -------IDLNTKDMEIFGIANKETVLGVNLFENPNLPLHIIEALRRKEAITFRIKYPLS 513

Query: 387 THKDTWHLPNGQTLHVIVTSN----PRGGTI-WMFENLTVQVDLETKYNTLVKVQGETID 441
           T K+ +       L +  T+      +G  I ++  N+    ++   Y+ L + +     
Sbjct: 514 TIKNYYSSKKNGLLEIYTTATELYDSQGNLINYLLINI-DNTEITQVYSQLAEFESSF-- 570

Query: 442 HLSE-----GVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
            +       G   F    R     P  + +L +     LS    +        R Y    
Sbjct: 571 SMVSKFGKIGYCRFDIWTRTGYGIPQWYYNLGEEATTPLSEIIGVYKHVHPEDRDYILKS 630

Query: 496 GWDLFAAIITSF-DDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER 553
              + A +I SF  D R +     +    +V+  ++   P     +    +VT+    E+
Sbjct: 631 IQQMKAGVIESFFKDLRITTAEGNKWTRINVIRNTMNDDPQKLDMICVNYDVTELKETEQ 690

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E   ++D +K++F+ ++S+E+R+PL  I+GF+DLL  S       ++  Y++ +
Sbjct: 691 RLIEAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSDLLAES---DDREERFGYLKIV 747

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +LL L++DILDL+ ++AG  K     + +  L NE+ +S + K+  + +++    
Sbjct: 748 QENNELLLQLISDILDLSKIEAGTFKFINDRVNVYQLCNEIVRSYSIKIKNHQVKLIFDE 807

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +    +D+ R++Q+ S  ++NA+ F+S+G+  +      N +    V + G  I E+
Sbjct: 808 QSPVYYITSDKNRVIQVLSNFINNALKFTSQGTITLGYELLPNHELKLYVCDTGQGIAEE 867

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             K +F+RFV      Q  G GLGLSI +S +   GG + ++S +   +      P
Sbjct: 868 KQKVIFDRFVKLNTFVQ--GTGLGLSICKSLVKQMGGQIGVNSKEGEGSCFWFTHP 921


>gi|256840639|ref|ZP_05546147.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737911|gb|EEU51237.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 524

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 107/529 (20%), Positives = 215/529 (40%), Gaps = 63/529 (11%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-----LATNPSNDE-LLE 357
           +      +   L V I ++D+   L   NR+   L+ I         L  NP+  E  + 
Sbjct: 11  EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGINLFENPNFPEDKIA 70

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNPRGGTIWMF 416
            L+    +    N++ +     + Y + +  K+  +L  + + + +   +    G + MF
Sbjct: 71  RLKQGEMVVFDCNYE-FDNIQTNEYYNIDPKKEGINLRLSIKCVPLKGEAEDICGYVLMF 129

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            + T +     K   L       +      +  +                   + +++  
Sbjct: 130 TDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYD-----------------VKTDKMHI 172

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII--PLP 534
              +R +        +       F  I+   D ER  +QG  ++++  + EYSI    L 
Sbjct: 173 DLDLRVLGNKSRLRASNLTTKKDFCEIVHPEDRERVLVQGFEKIVTGEIGEYSIQYRLLF 232

Query: 535 NAQTMLTF---------------------VNVTDSVRAERALTEKNE----------ALR 563
             Q +                        +++TD +  +  L                 +
Sbjct: 233 EGQYVWVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAK 292

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K+ F+ ++S+E+R+PL  I+GF ++L  +K      ++  YV+ I  +S +LL L
Sbjct: 293 EANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEE-EEREFYVDIIDKNSELLLQL 351

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + DILD + ++AG   +        ++  E     A K+   N+R       +  +  +D
Sbjct: 352 IEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQPVTVFSD 410

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +R++Q+ S  L+NA+ F+S+G  + L       +   SV + G  I E+ C+++F+RFV
Sbjct: 411 PKRVVQVISNFLTNAIKFTSEGE-IKLAYKVSKDEIRVSVSDTGMGISEEDCRTIFDRFV 469

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                  ++G GLGL+I ++ I   GG + + S+    +T    +P KE
Sbjct: 470 KL--NACKQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 516


>gi|144900521|emb|CAM77385.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 815

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/504 (23%), Positives = 197/504 (39%), Gaps = 45/504 (8%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            ++    +  +    V++ I D    +++ N +F  +       +  +         LRS
Sbjct: 330 EEEARKLFRAVEQSPVSVLISDAQGLIEYINPAFSAMTGYHRDEVLGHSP-----RMLRS 384

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMF-- 416
               PE      W           E         +G      +T  P     G +  F  
Sbjct: 385 DQTPPEVFA-DLWASISAGQEWRGEIVNQ---RKDGSVYWESMTVAPVKDGDGKVDSFIA 440

Query: 417 --ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             E++T    L                   + +A+   DGR + +NPA    +       
Sbjct: 441 FKEDVTEIRSLRLALELEHANLRRIFASTKDLIALVSTDGRFEYANPALVDTFGPVMG-- 498

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSDSVLEYSIIPL 533
                +R I              D F   I +  D+  + +G  +  L+    E+SI P+
Sbjct: 499 -----VRTI--------------DYFQPAIANLGDDNTATRGEWVSDLNGKTYEFSITPV 539

Query: 534 PNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                 ++      ++T   +AE A+ E  EA   ++  K  F+  +S+ELR+PL  IIG
Sbjct: 540 DTPHGEMSALLALHDITTRKQAELAMAEAREAAELSNRAKTEFLATMSHELRTPLNAIIG 599

Query: 590 FTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           F+++++   LG + +KQ   Y   I+ S   LL L+NDILD+A ++ G   L  S + + 
Sbjct: 600 FSEIIENELLGPVETKQYRDYAHDINESGRHLLTLINDILDVARLEVGRFALMESEMDVG 659

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             +    Q +  +     +RI       L   + D +R+ Q  + ILSNA+ F+S    V
Sbjct: 660 QTIRASVQLVGERAKAAGLRIGEQIPDGLPWLMGDERRIKQTIANILSNAVKFTSADGRV 719

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            + A  D       V + G  I  D    +   F        RR  G GLGL +   F++
Sbjct: 720 TVTAKTDENGLDIVVSDTGIGIHADDMTKIMAPFGQAESSLSRRFDGAGLGLPLARRFMD 779

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           +HGG +SISS+    T +N   P+
Sbjct: 780 MHGGTLSISSTPGQGTVVNLHFPA 803


>gi|34556655|ref|NP_906470.1| hybrid sensory histidine kinase [Wolinella succinogenes DSM 1740]
 gi|34482369|emb|CAE09370.1| HYBRID SENSORY HISTIDINE KINASE [Wolinella succinogenes]
          Length = 538

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 167/390 (42%), Gaps = 30/390 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F+    + +   +   L++   + +D  S  +++    G I  +N     +       L 
Sbjct: 121 FDRYIAEQEETKRSQRLLEEYKKAVDA-SAILSISDLSGNIIFANEKLCEITGYTREELL 179

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSII 531
              H           +   D        + S   E K  +G L+    +     ++ +++
Sbjct: 180 GHPH---------SMFRHPDTPKEVFERLWSTILEGKIWKGMLKNRKKNGEPYYVDATVV 230

Query: 532 PLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           PL +      Q +     +T  +RA+ AL    +   +AD +K  F+ ++S+E+R+PL  
Sbjct: 231 PLMDENNQITQFLGLCYEITSLIRAQNALRVALKRAEEADRVKGVFLANMSHEMRTPLNG 290

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIGF  LL      +LN +Q +YVE I  S   LL ++NDILDL+ +++G  +L    + 
Sbjct: 291 IIGFGRLLLEE---NLNQEQREYVEIIDKSGEHLLGIINDILDLSKIESGKFELESLPMK 347

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           L++ L  V      K  E  +++  +     G  +  D  RL Q+ + +L NA+ F+ +G
Sbjct: 348 LSEELRAVADFCEVKAREKGVKLLCLFKEIEGLIIQGDVMRLKQVTANLLGNAIKFTPEG 407

Query: 706 STVI--LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGL 758
             V   ++   +  + I   FSV + G  I  +  + +F  F            G GLGL
Sbjct: 408 GEVRLGVEVLEEREEAIALDFSVSDTGIGIAPEYLEKIFRPFEQAESSTARNYGGTGLGL 467

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           SI +  + L GG +   S +   +  +  +
Sbjct: 468 SISQELVRLMGGEMRCQSEEGKGSRFSFTL 497


>gi|298481290|ref|ZP_06999483.1| two-component system histidine kinase [Bacteroides sp. D22]
 gi|298272494|gb|EFI14062.1| two-component system histidine kinase [Bacteroides sp. D22]
          Length = 513

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 123/515 (23%), Positives = 226/515 (43%), Gaps = 43/515 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR-SFVELWEIDLAFLATNPSNDEL 355
           KE+    Q  +  E+L+ L   + IFD N  +   N+ +F EL          +PS +++
Sbjct: 13  KEMEDYKQTLYNDELLNILPDGVIIFDTNGEVIQLNQQAFAEL--------HVHPSVNDM 64

Query: 356 LEFLRSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG- 411
           L F    N+L + LN    KE+I S + +     ++T+ LP    +   V  T  P  G 
Sbjct: 65  LPF--PTNRLFKLLNK---KEDILSTILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGE 119

Query: 412 ------------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI--K 457
                        ++ F N+TV++  E   NT ++       +     + F  D R    
Sbjct: 120 FATIRDRTNLNKILFFFRNITVELTQEYILNTALQRTRIYPWYYDISRSEFTLDDRYFEH 179

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L  PA  +   T E  ++   H  +       +  +  G   F   +  F   R    GT
Sbjct: 180 LGIPAGENNTLTMEEYVNM-IHPDDRQPMADAFVVQLSGNTTFDKTV-PFRLRRG--DGT 235

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            E         + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S
Sbjct: 236 WEWFEGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMS 295

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++DILDL+ +++  
Sbjct: 296 HEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNT 355

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +K  +S   LN L+ ++++  A K   + I IK +   +      D  RL Q+    ++N
Sbjct: 356 IKFTFSNCSLNSLMMDIEKEQAMK-PISEIEIKSLLPDEDVYINTDITRLKQVICNFINN 414

Query: 698 AMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           A  F+ KG  +      DN         V++ GS IP++    +F+RF        ++G 
Sbjct: 415 ARKFTQKG-YIHFGYTLDNRNADSVQIFVEDTGSGIPQECLNEIFDRFYKVDTF--KQGT 471

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI ++ +    G +S+ S     +     +P
Sbjct: 472 GLGLSICKTIVEHLQGDISVKSEIGKGSCFTVTLP 506


>gi|190894857|ref|YP_001985150.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
 gi|190700518|gb|ACE94600.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 780

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 110/683 (16%), Positives = 231/683 (33%), Gaps = 69/683 (10%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           VS +    RI     + +  A    + ++L   ++            V   D+ G +L +
Sbjct: 101 VSAAELVARIKRHIELGAAQAHLRRRNEQLDTALASMG-------QGVCLFDEDGRLLLS 153

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N  Y +    +  V          L   E    + ++S  +       + +        K
Sbjct: 154 NNRYAEVYGLDPAVIHPGQSLEDILKLREDVGAVPATSTSDYLAWAVATNMGDAPQDWIK 213

Query: 279 ----------IVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEI------------- 311
                       +     G      D++     E  + +                     
Sbjct: 214 ELKTGQIIRGYHQRTPEGGWVSTHEDITQAWFAEKALAEAHAQAERAEQEARAAHARLLA 273

Query: 312 -LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
               +   + +FD        NR + +L+      L      ++ L       + PE + 
Sbjct: 274 AFEVVPEGLVLFDAEDRFVLWNRRYEQLYAESGDMLVKGMRFEDRLRTGLECGQYPEAVG 333

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
            +         + +  T K    LP  + + +       GG++ +  ++T     E  + 
Sbjct: 334 REQEWLEERLAHHAEPTSKHEQRLPGNRWIRIEERRISEGGSVGIRVDITDLKMQEASFR 393

Query: 431 TLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA---- 485
            L        +     + V+  +  +    N A    +     +    T +R+I A    
Sbjct: 394 LL-------FEGNPMPMWVYDRETLKFLHVNQAAIDHYGYRLEQFLTMT-LRDIQAPQDA 445

Query: 486 ----------------TCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVL 526
                           TCS  + ++DG  +   + ++  + +    SL   +++      
Sbjct: 446 DRATAAVFDAEDPAATTCSFRHLKADGGAIEVTVYSTCLNHKGKAASLMAVVDVTEAKRA 505

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E +++   +    +      +  R    L    E  ++ +E++  FV   S+E R+PL  
Sbjct: 506 EKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSMASHEFRTPLAV 565

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G    L   K  +     ++  + I +S + +L L+  IL    +D G + +      
Sbjct: 566 IDGAAQRLIRRKEAATPEFLAEKADQIRSSVSRMLELMESILAAGRLDHGRITIVPKPCS 625

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + +++        +    +   +K+  D    +   DR  L Q+FS + SNA+ ++    
Sbjct: 626 IAEIIETCSARQESIRRSHRFLLKL--DELPETIYGDRPALDQVFSNLFSNAVKYAPDSP 683

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            V +   ++      +V++ G  I  D    +F R+          G G+GL++V+  + 
Sbjct: 684 NVHVSGWQEGERVCITVRDEGIGIDADDLPKMFQRYFRARSSTGIAGTGIGLNLVKQIVE 743

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           LHGG + ++SS    TT   RIP
Sbjct: 744 LHGGTIDVASSRGNGTTFTLRIP 766


>gi|150021705|ref|YP_001307059.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
 gi|149794226|gb|ABR31674.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
          Length = 423

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 173/395 (43%), Gaps = 40/395 (10%)

Query: 408 PRGGTIWMFENLTVQV-DLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           P    +++ E +  ++  LE     L   +K     ++++ + + +   DG I  +N   
Sbjct: 47  PNSPPLYVSEKIRKKIVSLEENIYELELSLKNHLTILNNIVDPIIISKKDGTITFANMEA 106

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R++ +       PG   R +      YY      +          ++++   G + L  +
Sbjct: 107 RNITR-------PGVEGRKLYEVFEDYYVNQMFEEA--------QNKKEITSGEINLFVN 151

Query: 524 S---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                 E  I+P+   Q    ++ +   V  ER L          +  +  F+ +VS+EL
Sbjct: 152 GEKKYYELKIVPVTLEQNNERYIIILHDVTQERIL----------ENARKEFISNVSHEL 201

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT+I G+ + L    L        +++  I + +  +  L+ND+LDL  +++G  + 
Sbjct: 202 RTPLTSIHGYAEALLEDNLDD-KELIRRFLTIIESEAARMTRLINDLLDLEKLESGNTQF 260

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            +  I   ++L  V+  I     + N+ ++ +S  K+   + D+ RL Q+   ++ NA+ 
Sbjct: 261 IFEKINFTEILEHVRNIIEPLTKDYNVDVEFVSPDKI-ELIGDKDRLTQMVLNLVDNAVK 319

Query: 701 FS---SKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           ++    KG   V+++A +DN      VK+ G  IPE   K +F RF         +  G 
Sbjct: 320 YTSLKEKGEKKVLVEAYKDNNHVKLIVKDTGVGIPEKAQKKLFERFYRVDKARSRKMGGT 379

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSIV++ +  H G +  +S +   T     +P
Sbjct: 380 GLGLSIVKTIVEKHNGTIEFTSKEGVGTKFIVTLP 414


>gi|154249956|ref|YP_001410781.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153892|gb|ABS61124.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 969

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 126/665 (18%), Positives = 258/665 (38%), Gaps = 96/665 (14%)

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
           FDS + ++   D+   IL  N S+    +    + + A     ++  +E    + +   +
Sbjct: 52  FDSTNDMIVLIDKEEHILSYNKSFSSMVKEFLGIEELAYKNISEILSQECISVIRNGYGI 111

Query: 259 EKNF--CETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL- 315
            + F     +S ++         V+     G+A    +++    + +++    +    L 
Sbjct: 112 VEKFGRYFQISVVDIKEK-----VKNSKFEGKAVFFHEITDIKKLEEEVIAESKKYQTLF 166

Query: 316 ---TVAIAIFDQNRYLQFHNRSFV--------ELWEIDLAFLATNPSNDELLEFLRSANK 364
               + I + D N  +   N  F         EL    ++ LA     +++++ ++    
Sbjct: 167 EFSPLGILVEDSNGNILDVNPEFCKINCLRKEELIGQHVSILAPKEDYEQVIKNIK---- 222

Query: 365 LPEQLNWKTWKENIFSVYKSSE-----THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
             E ++ KT    + ++ +S E      ++    LP+G+            G + + +++
Sbjct: 223 --EIISGKTLIHTVRNLSRSGEVKYLELYERKITLPDGK-----------DGILSIQKDI 269

Query: 420 TVQVDLETKYNTLVKVQGETID------------------HLSEGVAV-----------F 450
           T  V  +    +L K Q   +                      E +A            F
Sbjct: 270 TKIVMAQKVIKSLAKYQQIILQLALNIINTPVEKIDKEIKRAIELIAKELNTNRIRVYKF 329

Query: 451 GPDGRIK------LSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDL 499
             DG          SN    + + +   +   G  +  + A        +  +      +
Sbjct: 330 SADGSFNSISNWFYSNNPIENTFVSFNIKDISGKELDELMAGKQFSIAKQNVSNEFIKKM 389

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM----LTFVNVTDSVRAERAL 555
           F     S     K  +  +  +S +  E   + +   +          N     + E  L
Sbjct: 390 FGENSISLITPIKINENVIGFISAAFKEDRALTVAEKRIFLLLATLLANSEIRKKYEEEL 449

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +   KA++ K+ F+ ++S+E+R+PL  IIGFT+LLK +K   L+ KQ +YV  I  
Sbjct: 450 IKAKQEAEKANQAKSIFLANMSHEIRTPLNGIIGFTNLLKETK---LDEKQEKYVSIILK 506

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS +LL ++NDILDLA +++G  +L      L   L         K  E N+  ++  D 
Sbjct: 507 SSELLLEIINDILDLAKIESGKYQLEPLETNLKMELQSSLLLYEAKAKEKNVEYEIRIDK 566

Query: 676 KL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSS 729
           ++    + D  RL Q+   +++NA+ F+  G +V +         ++ +  FSV + G  
Sbjct: 567 EISDCLILDSVRLQQVMFNLINNAIKFTPAGGSVKVFVKKISEDEEHENIRFSVIDTGIG 626

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++  + +F  F   +     +  G GLGL+I    +++ G  + + S +E  +     
Sbjct: 627 IPKEKLEKIFEPFEQASVSVTKKYGGTGLGLAISNLIVSMMGSKIIVESEEEKGSHFYFD 686

Query: 788 IPSKE 792
           +  K+
Sbjct: 687 LKLKK 691


>gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
 gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
          Length = 1683

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/509 (18%), Positives = 191/509 (37%), Gaps = 31/509 (6%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +KE+  ++Q +       ++   I   D+  +  F N S  ++       + ++      
Sbjct: 677  TKELAASEQKSKLIN--SSVADGILGVDKLGHFIFANESATKITGYSEEQILSSDLISLF 734

Query: 356  LEFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
                +      +   +K  + + +  +            LP   ++  +         + 
Sbjct: 735  AGDNKENLTFEDTEVYKAIQSKEVIRISNEYVLMSGARELPLEYSISPVEDDESELACVI 794

Query: 415  MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              +++T++V    +         + ++HL   + +   +  ++  N     L    E   
Sbjct: 795  ALQDITLRVQETERLE-------KMLEHLPVCMVIMNQNDEVEQINQTGIELLGF-ERDE 846

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII--P 532
              G  +           +++     F    T  D         ++  S  ++E   +  P
Sbjct: 847  IVGNPVDLFIPQEQVESHKALLKKFFQE-ETVIDTRSLERDFKVKHKSGKLIEIQAVYTP 905

Query: 533  LPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +     +   V V D     +AE AL E       A + K+ F+ ++S+E+R+P+  I+G
Sbjct: 906  VHFHNGLYAAVMVRDITLDRQAEFALLEAKRISDDASKAKSDFLANMSHEIRTPMNAIMG 965

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             + L        L+ K   YV  +  ++  LL ++NDILD + ++AG + +      L+D
Sbjct: 966  MSHLAL---GCELDRKPKNYVTKVYKAAESLLGIINDILDFSKIEAGKLDIEVIEFSLHD 1022

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV 708
               ++   I  K  E N+ +       +      D  RL QI   +  NA+ F+ +G  V
Sbjct: 1023 TFADLANIIGLKAGEKNLELLFDISPDVPVNLKGDPLRLNQILINLAGNAVKFTEQGQVV 1082

Query: 709  I--------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
            I          +  D+ +  FSVK++G  + ++  K +F  F        R   G GLGL
Sbjct: 1083 ISVNVVTNVSTSHCDDINLEFSVKDSGIGMDDEQQKKLFQSFSQADSSTTRKYGGTGLGL 1142

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCR 787
            +I +  + L  G + + S     +  +  
Sbjct: 1143 TISKKLVELMNGQIWLESKAGEGSCFSFT 1171



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 100/289 (34%), Gaps = 20/289 (6%)

Query: 167 RILSLDGI-YSELAE-TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS--- 221
           R   +      ELAE  T++ K+L+      K++  S+   +   D+ G  ++AN S   
Sbjct: 657 RANDISRRSQQELAEQVTIRTKELAASEQKSKLINSSVADGILGVDKLGHFIFANESATK 716

Query: 222 ---YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS-- 276
              Y +       +     G++++    E  +   +  + E         L  G  +   
Sbjct: 717 ITGYSEEQILSSDLISLFAGDNKENLTFEDTEVYKAIQSKEVIRISNEYVLMSGARELPL 776

Query: 277 -YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            Y I  V +   E    I +        +     ++L +L V + I +QN  ++  N++ 
Sbjct: 777 EYSISPVEDDESELACVIALQDITLRVQETERLEKMLEHLPVCMVIMNQNDEVEQINQTG 836

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
           +EL   +   +  NP +  + +    ++K   +  ++          +     K      
Sbjct: 837 IELLGFERDEIVGNPVDLFIPQEQVESHKALLKKFFQEETVIDTRSLERDFKVKH----K 892

Query: 396 NGQTLHVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +G+ + +     P           M  ++T+    E       ++  + 
Sbjct: 893 SGKLIEIQAVYTPVHFHNGLYAAVMVRDITLDRQAEFALLEAKRISDDA 941


>gi|121605766|ref|YP_983095.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
 gi|120594735|gb|ABM38174.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
          Length = 1261

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 116/669 (17%), Positives = 237/669 (35%), Gaps = 69/669 (10%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-NTETEGI 231
            G+  E+ E       L           ++L   +   D+ G IL  N ++ +   E +  
Sbjct: 459  GVVQEITERKQAEDALRESQRFLHSTLNALSGHIAVLDEFGTILEINEAWSRFALENQTA 518

Query: 232  VFQKAIGESRKLFKEEIKKRMIS-SSALEKNFCETVSTLEHGNN---------------K 275
                ++G      +        S        + E +  +  G                 +
Sbjct: 519  GVNASVGVGVNYLQHCEHCEHKSFQCGDTSAYAEAIKDVIAGRRTRFEMEYACHSPTQQR 578

Query: 276  SY--KIVRV--LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIA----IFD 323
             +  ++ R           +  D ++    E    D       + +++         IFD
Sbjct: 579  WFVMRVTRFQSPGPVRIVIVHDDCTERKLAENASRDTEERYRNLFNSMDEGFCLIEMIFD 638

Query: 324  QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-----LRSANKLPEQLNWKTWKENI 378
              +              +D  FL  NP+ +           R    +P+   +  W E  
Sbjct: 639  GQQK------------PVDYRFLEVNPAFETQTGIRNVTGKRVREIMPDLEAY--WFEIY 684

Query: 379  FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVK 434
              V  + E+ +    +        +  +   G        +F+N+T ++  +        
Sbjct: 685  GKVALTGESLRFINEVKALDQWWDVHATRLGGPENRQVAIIFDNVTQRMKADEALRQSEA 744

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-CSRYYNE 493
                  D     +      G IK  NP    LW  E             +   C      
Sbjct: 745  RFRLLFDRGPVAIYSCDTSGMIKEFNPCAVKLWGREPTPDDIDERFCGSSRVYCLDGTLL 804

Query: 494  SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQT-----MLTFVNVT 546
            +   +   A++     +   ++  +E    S +    +I+PL N+       +  F ++T
Sbjct: 805  TPEQNPVIAVLKGEMLQAHDVEALIERPDGSRIHVIANIVPLRNSWGEITGAINCFYDIT 864

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +  R E+   E+ +AL +  + K+ F+  +S+ELR+PL  +     LL+  K     + Q
Sbjct: 865  ERSRLEQKTQEQAQALAELHQRKDEFLAMLSHELRNPLAPLASAVQLLQRQKN---EAPQ 921

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Q +  I   +  L +LV+D+++++ + +G ++L    + L D++    ++    M +  
Sbjct: 922  QQALSIIERQTGQLKHLVDDLMEISRITSGSVRLRQERVSLGDVVERALETTRPLMLQRR 981

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFS 722
              + V    +     AD  RL Q+   +L+NA  ++ KG  + L A ++     G  +  
Sbjct: 982  HELAVSLPPEPLWLHADATRLEQVLVNLLTNAAKYTDKGGRIWLSAGQEEAAGTGAAVVR 1041

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I  ++   +F+ F          + G+G+GL +V   + LHGG V + S    
Sbjct: 1042 VRDTGIGIAPELLPRIFDLFTQAERSIDRSQGGLGIGLCLVRRLLELHGGTVDVRSVLGQ 1101

Query: 781  VTTINCRIP 789
             +    R+P
Sbjct: 1102 GSEFVVRLP 1110



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/420 (15%), Positives = 134/420 (31%), Gaps = 40/420 (9%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH------RDQAGDILWANISYKKNT 226
           G+  E  +  L   KL      +++ F+S++                  + AN ++   T
Sbjct: 206 GLMDEAVQARLAMGKLRESEEHYRMCFESIEEGFCIIEKLEGETLDFRYVEANAAFAAQT 265

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG--NNKSYKIVRVLN 284
               +V +         F+E +      +   +    +     +       ++++   ++
Sbjct: 266 SLRDVVGKTLRQVLPDEFEERLAIYDTVTRTGQPIKIQRRFGSQGRVLELYAFRVEDDMH 325

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWE 340
                    D+++  +  ++L      L  L     V + + D +      N++  +L  
Sbjct: 326 RRVAINF-QDITERKSAEEKLARQAAELATLYATAPVGLFMLDTDLRYVRINQAMADLNG 384

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +           + L   L  A    E L  +  +     + +  E H  T    +G+  
Sbjct: 385 LSAERHIGRTLRELLTAGLADAV---EPLLRQVLETGRPELNR--EVHGATLPR-SGEQR 438

Query: 401 HVIVTSNP----RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           H +V+ +P     G   G   + + +T +   E       +    T++ LS  +AV    
Sbjct: 439 HWLVSYHPVQAGDGTITGVHGVVQEITERKQAEDALRESQRFLHSTLNALSGHIAVLDEF 498

Query: 454 GRIKLSNPAFRSL------------WKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLF 500
           G I   N A+                    N L    H  + +  C      ++   D+ 
Sbjct: 499 GTILEINEAWSRFALENQTAGVNASVGVGVNYLQHCEHCEHKSFQCGDTSAYAEAIKDVI 558

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           A   T F+ E      T +      +     P P  + ++   + T+   AE A  +  E
Sbjct: 559 AGRRTRFEMEYACHSPTQQRWFVMRVTRFQSPGP-VRIVIVHDDCTERKLAENASRDTEE 617


>gi|297585568|ref|YP_003701348.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297144025|gb|ADI00783.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 608

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 174/397 (43%), Gaps = 34/397 (8%)

Query: 401 HVIVTSNPRGGTI-WMFENLTVQVDLETKYNT---LVKVQGETIDHLSEGVAVFGPDGRI 456
           +V V  +   G +   F  LT    LE  + T     +     + H+++GV     +G+I
Sbjct: 228 NVEVYGDDEIGQLSATFNELTN--KLEEAHATTEGERRKLSSVLTHMTDGVIATDREGQI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N     L    +        +  +    + +   SD +++   I+  F+   + L  
Sbjct: 286 ILMNRRAEELTGYSQEEAIGYDLVGML--NLAHFMKLSDLYNMDDPILLDFEHHDEEL-- 341

Query: 517 TLELLSDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                   +LE  +S+I   N +       + D    ER            ++ +  FV 
Sbjct: 342 --------ILEANFSVIEKENGRKNGLIAVLHDVTEQER-----------IEQERREFVA 382

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+ELR+PLT++  + + L    +   +    Q+++  S  +  ++ LVND+L L+ +D
Sbjct: 383 NVSHELRTPLTSMKSYLEALLDGAVND-SDVAPQFLQVTSNETDRMIRLVNDLLQLSKMD 441

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           A    +  + + + ++++ V         + NI+ +        S + DR +L+Q+   +
Sbjct: 442 ARDDHMLMAEVNIVNMIHHVIDRFEMSNKQENIQFRRRLPDVPLSVMGDRDKLVQLLDNM 501

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           +SNA+ +S +G  + +   ++    I SVK+ G  IP++    VF+RF        R   
Sbjct: 502 VSNAVKYSPEGGVITITLKQEKERLIVSVKDEGVGIPKENLPHVFDRFYRVDKARSRSLG 561

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+I +  + +HGGH+ +SS     TT    +P
Sbjct: 562 GTGLGLAIAKEIVEVHGGHIWVSSDWGKGTTFFFSLP 598



 Score = 41.1 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 33/175 (18%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-----LATNP 350
               T   +      +L ++T  +   D+   +   NR   EL            L    
Sbjct: 253 EAHATTEGERRKLSSVLTHMTDGVIATDREGQIILMNRRAEELTGYSQEEAIGYDLVGML 312

Query: 351 SNDELLEFLRSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           +    ++     N   P  L+++   E +  + +++ +  +     NG+          +
Sbjct: 313 NLAHFMKLSDLYNMDDPILLDFEHHDEEL--ILEANFSVIEK---ENGR----------K 357

Query: 410 GGTIWMFENLTVQVDLETKYNTL-----------VKVQGETIDHLSEGVAVFGPD 453
            G I +  ++T Q  +E +               +      ++ L +G AV   D
Sbjct: 358 NGLIAVLHDVTEQERIEQERREFVANVSHELRTPLTSMKSYLEALLDG-AVNDSD 411


>gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 1375

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +T      + +  + E+ L +      +A+E K++F+  +S+E+R+PL +I+G  DLLK 
Sbjct: 838  RTADLNQEIEEHKKTEKRLEQAILRTEEANEAKSAFLASMSHEIRTPLNSILGVADLLKN 897

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +    L+ +Q +YV    +S  ILL ++NDILD + ++A  +KL    + L      + Q
Sbjct: 898  T---DLSDEQGEYVNIFESSGEILLTIINDILDFSKIEANHVKLENIPVDLLQETESLMQ 954

Query: 657  SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
              AT     ++ + +     +   V  D  R+ QI   IL+NA+ F+S G   +++  + 
Sbjct: 955  LQATAASSRHVELVMRYKPDVPEIVLGDSTRIRQILLNILANAVKFTSSGEVSIVVSRSP 1014

Query: 715  DN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
            ++    +  F++ + G  I  +   S+F  F        R   G GLGLSI      L G
Sbjct: 1015 ESNSTDNITFTISDTGIGIAPEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMG 1074

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G ++ SS+    +T    +P 
Sbjct: 1075 GTITASSTPGKGSTFMVTLPL 1095


>gi|92115761|ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
 gi|91798655|gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
          Length = 752

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 151/367 (41%), Gaps = 16/367 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +      +   + + +   DG I   N A+  L +             ++  + 
Sbjct: 101 ELKEAEERARSLFESQDDLIVLRNADGLITSVNDAYCVLAQ---------RSRADLLGSR 151

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                   G     +  T   D+R         ++       I     A+      +VT+
Sbjct: 152 FALPVLEQGESAIESNGTRIHDQRVETALGPRWIAWREGLVRIDANHPAELQCVGRDVTN 211

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E AL E  +    A+  K+ F+   S+E+R+PL  IIG + LL  +   SL  +Q+
Sbjct: 212 RTETEYALGEARDHANAANRAKSRFLAMTSHEIRTPLNGIIGMSGLLLDT---SLTPEQT 268

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            YV+ + AS   LL+L+ ++LD + ++AG + L     +L+DL+ ++ + +A +     +
Sbjct: 269 TYVKAVKASGDALLSLIEELLDYSRIEAGKIDLESRPFILSDLIEDITELLAPRAQARQL 328

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725
            I    D +L    + D  RL QI   +  NA+ F+  G   +I++   + G   F V++
Sbjct: 329 EIAAYIDEQLPIEVIGDATRLRQILLNLAGNAIKFTPSGGVALIVEPGTEPGTIRFMVQD 388

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  D    VF  F     +      G GLGLSI +  +   GG +++ S     +T
Sbjct: 389 TGIGITPDAQARVFREFEQADEQIARNYGGTGLGLSISDRIVKRMGGRITLESKPGAGST 448

Query: 784 INCRIPS 790
               IP 
Sbjct: 449 FEVSIPL 455


>gi|300856171|ref|YP_003781155.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium ljungdahlii DSM 13528]
 gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium ljungdahlii DSM 13528]
          Length = 949

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 171/384 (44%), Gaps = 22/384 (5%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F +   ++  E  Y   +  Q   +++    +            N A  S +  +++ L 
Sbjct: 174 FSHTRTRIVKEKTYKKALSGQAILLNNSESQIWALSNVTSYAAVNEAHASFFGKKKSDLE 233

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLP 534
               + +I    +     +  W+LF    ++  + E ++ +G      + +L+    P  
Sbjct: 234 Y-QDLYDIFDIDTANKLSASNWELFQKNESAKKEIEVRNFKGE-----NRLLQIKSKPQK 287

Query: 535 NA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +        + T  ++T+   AER L +  E    A+  K+ F+ ++S+E+R+P+  I G
Sbjct: 288 DKTGNIKYLICTAEDITEQRLAERELYKAKEQAEAANIAKSQFLANMSHEIRTPMNGIFG 347

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F DLL+++   +L+ +Q  ++    ++S +LL ++NDILD + ++A  + +      L +
Sbjct: 348 FLDLLQST---NLSLEQKDFIREAKSASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRN 404

Query: 650 LLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST- 707
            + +    +  K  E  + +  +IS+G     V D  RL QI + ++SNA+ F++KG   
Sbjct: 405 TIEDAVSLLVPKAVEKGLELYTMISEGVPEEVVGDPSRLRQILNNLISNAVKFTNKGEIS 464

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
           V +   ++  +     F VK+ G  I +D   ++F  F        R   G GLGL+I  
Sbjct: 465 VTVDCLKEENETAVLNFEVKDTGIGIRKDHIDNIFKSFSQADTSTTRKYGGTGLGLAISS 524

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             + + GG + + S     +    
Sbjct: 525 ELVKMMGGEIHVESIFGKGSIFKF 548


>gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453]
 gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453]
          Length = 559

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 10/258 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+M       +  +    L +  EA   A + K  F+  +S+E+R+P+  +IG  DLL  
Sbjct: 137 QSMQLHQKTLELEKINHELVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNGVIGMIDLLMD 196

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S+   L  +Q +Y   I  S+  L+N++NDILD + +++G M+L      L   + EV  
Sbjct: 197 SE---LQEEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFG 253

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----K 711
             + +  + N+++    + ++ S V  D  RL Q+   ++SNA+ F+++G   ++    +
Sbjct: 254 LFSGEASKKNLQLSYYIEERIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLTQ 313

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
              D     F+VK+ G  I  +    +F  F         +  G GLGL+I  S + + G
Sbjct: 314 VEEDRLTLEFTVKDTGIGISSEKIDRLFKPFSQLDSSMTRKYGGTGLGLAICRSLVQMMG 373

Query: 770 GHVSISSSDEGVTTINCR 787
           G +++ S +    T    
Sbjct: 374 GDITVESKENKGATFVFT 391


>gi|325108371|ref|YP_004269439.1| integral membrane sensor signal transduction histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324968639|gb|ADY59417.1| integral membrane sensor signal transduction histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 609

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 129/260 (49%), Gaps = 26/260 (10%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L   N +L + +++KN F+  +S+ELR+PL +I+GF+D+L      +LN KQ +Y+  I
Sbjct: 292 ELARANLSLFEMNKLKNEFLATMSHELRTPLNSILGFSDVL--GSADNLNDKQKRYLGNI 349

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S+S   LL L+NDILDLA +++G M+L+     + +++ ++  SI+      NI +  + 
Sbjct: 350 SSSGQRLLTLINDILDLAKIESGKMELHAVEFSIAEIVEQLCLSISPLADRKNIELTWMC 409

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGD---------- 718
              +     D  ++ QI + +LSNA+ F+  G  V ++        D  +          
Sbjct: 410 SPDMPPMYQDAGKIQQILTNLLSNAVKFTPDGGRVRVEVTPLCLVPDENNTDDSVPAARD 469

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--------RGQRRGVGLGLSIVESFINLHG 769
               SV + G  IP    + +F +F  ++           +  G GLGLSIV+    L G
Sbjct: 470 LVQISVADTGIGIPLADQERIFEKFRQSSAVPGQEDLLTREYEGTGLGLSIVKELCKLLG 529

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G V + S     +T   RIP
Sbjct: 530 GEVKVESEFGKGSTFVVRIP 549


>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1819

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 114/584 (19%), Positives = 210/584 (35%), Gaps = 76/584 (13%)

Query: 268  TLEHGNNKS--YKIVRVLNSFGEAGIAID-VSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
            T E G  +    +I  +  +     IA + ++ E  + +       ++ N    I   D 
Sbjct: 803  TAEQGEREWSDLEISMIQVAVNSLAIAEERLNAEELIRNAEQRYRLVVENARDIIFQMDL 862

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
                 F N ++  +  + +A     P      +             ++  +E +   Y  
Sbjct: 863  TGRFTFLNPAWERITGLKVADTVGRP----FWQAAPEGMVQELGAGFRILREKVTDRYHQ 918

Query: 385  SETHKDTWHLPNGQTLHVIV----TSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQG 437
            +       HLP+ +T+ +        +P          F +++    +E       +   
Sbjct: 919  TIH----LHLPDERTVWLDAFMQRVPDPETQREMISGTFVDISSFKRIEYMLRRNEQALR 974

Query: 438  ET--------------IDHLSE-GVAVFGPD----GRIKLSNPAFRSLWKTEENRLSPGT 478
                            IDHL + G+  FG D    G++   N          E     G 
Sbjct: 975  SLHDITSSQSLPFDQKIDHLLQVGIQTFGMDYAYVGKL-AGNALLIESSHPFEGGFQEGM 1033

Query: 479  HI-------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL----E 527
             +       R           E+     FA        +  +  GT  ++ + V      
Sbjct: 1034 TLEIEHTFTRETLRANEPLGIENVAESDFAGHPAHRITQMAAYLGTPIIVGNEVYGILAF 1093

Query: 528  YSIIPLPNA-----QTMLTFVNVTDSVRAER------------ALTEKNEALRKADEIKN 570
            YS+ P   A        L  +        ER             L    +   +A  +K+
Sbjct: 1094 YSLKPRRTAFSSSDHEFLRLMAQWIGAEIERDRYLKQLQRISDELALARDQALEASRLKS 1153

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+  +S+E+R+PL  +IG +++L  +    LN +Q+ +   I  S   LL+++NDILD 
Sbjct: 1154 EFLATMSHEIRTPLNAVIGMSEILLDT---PLNEEQADFARIIRDSGKSLLSIINDILDF 1210

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQ 689
            + ++AG M L      L  L++ V +  A+ + + N+ +   I+       V D  RL Q
Sbjct: 1211 SKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLHLFGWIAPDVPNIVVGDPVRLRQ 1270

Query: 690  IFSKILSNAMDFSSKGST-VILKA-ARDNGDFIFSVK--NNGSSIPEDMCKSVFNRFVSN 745
            +   ++ N + F+ +G   V +    R   + I  V+  + G  + E   K +F  F   
Sbjct: 1271 VLINLVGNGVKFTEQGHVSVSISLQERLENEVILRVEVHDTGIGLSETARKRLFTPFTQA 1330

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 RR  G GLGL+I +S + L GG + + S +   +T    
Sbjct: 1331 DGSMTRRFGGTGLGLAISKSLVELMGGEIGVESVEGQGSTFWFT 1374



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 75/208 (36%), Gaps = 19/208 (9%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
           +++     L     + ++TL  G   +  + ++     +       +++ +   Q+ +T 
Sbjct: 304 EKLGERLRLATELQDHLATLPPGEELA--LSQISAPLQDLIQQTQQARQESQTRQMLYT- 360

Query: 310 EILHNLTVAIAIFDQNRYLQF-HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
           ++        A+           NR F  L E++       P N      L  +  +PE 
Sbjct: 361 QLFEQAREGFALLAPETLEVLETNREFKNLLEMEET---DEPVN---FASLLLSRVIPEV 414

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF---ENLTVQVDL 425
                 ++ +  + +  E  + +  L +G+ + + +         + +    ++T ++ L
Sbjct: 415 RG--ALRQELREIARKGEGLEKSLALRSGREIELSIQPLRIASRYYFYAFVRDMTERLRL 472

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           E +    ++        L++ +AV   D
Sbjct: 473 EERLQNQLRETAL----LNQVIAVTTTD 496


>gi|307592363|ref|YP_003899954.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986008|gb|ADN17888.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1262

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 123/658 (18%), Positives = 238/658 (36%), Gaps = 68/658 (10%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL---VWHRDQAGDILWANISYKKN 225
             +   I  EL E     ++L     +    F++       +   D     L  N +    
Sbjct: 634  RAKKNIEQELLERKKLERELRKREQLLDGFFNAASDAKVGMCINDLNFRFLKINQA---L 690

Query: 226  TETEGIVFQKAIGESRKLFKEEIKKRM----ISSSALEKNFCETVSTLEHGNNKSYK--- 278
             +  G   +  +G +      E+   +     +     +     +S +   +    +   
Sbjct: 691  ADINGYSIEDHLGRNLDDVLPELAPTLKPLWENVIDSNQPINLEISAVVPSSRGVMRYWS 750

Query: 279  ------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI-FDQNRYLQFH 331
                  +    N  G   + I++++   +  +     EIL      IA      + + + 
Sbjct: 751  VAYFPILAENENLIGIGAVVIEITESKRLELEQAKLIEILEATPDIIATASSATQKVGYC 810

Query: 332  NRSFVELWEI----DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            N++  +L  +     +  L       +    +     +P  +    W+       +++  
Sbjct: 811  NQALRKLLGVAPNSPVTDLTIADVYPQWAYSMIQNEGIPTAIREGIWRG------ETAFL 864

Query: 388  HKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
              D   +P  Q +           ++     +++ Q   E       +     ++++   
Sbjct: 865  GIDGEEIPFSQVIIAHTFGTEAVQSVSTIARDISEQKQKEAILRESDRRWQSLLNNIKLI 924

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN---------IAATCSRYYNESDGW 497
            V      G ++  NP F SL +  E  +                 +  T  R   E + +
Sbjct: 925  VVGLDLQGNVEYVNPFFLSLTEYTEPEILGKNWFNQFLPADIQTSLTTTIFRELLEQEKY 984

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
              +   I +   E + +  T  +L D+          N Q + T     D   +E     
Sbjct: 985  IYYQNPILTSSGEERLIAWTNTVLRDA----------NEQPIGTVSIGQDITESE----- 1029

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                  K   +K+ F+  VS+ELR+PLT++     LL    +   + +  + +E  +   
Sbjct: 1030 ------KLARMKDEFISVVSHELRTPLTSLQAALSLLYEKIIDPTSDEGQETIEIATEGV 1083

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              L+ LVNDILDL  + +G ++L       + ++      I     E  I IK  S+ + 
Sbjct: 1084 NRLVRLVNDILDLERLSSGKIRLEKQFCQTDGVILAALDQIKEIAKEAQIIIK--SEYEN 1141

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGSSIPEDM 734
              F  D  RL+QI   +L+NA+ FS + S + LK  + N      +FS+ + G  IP D 
Sbjct: 1142 FFFWCDSDRLVQILINLLNNAIKFSPQNSIIELKVQQQNSPMPSLLFSISDQGRGIPSDK 1201

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +S+F+RF  V  +    + G GLGL+I  S +  HGG + ++S     +T    IP 
Sbjct: 1202 LESIFDRFGQVDASDSRAKGGTGLGLAICRSIVTQHGGEIWVNSKLGQGSTFYFTIPL 1259



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 157/475 (33%), Gaps = 60/475 (12%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  +  E  ++ +++   +     L D  D  +   +    I++ N   ++     G   
Sbjct: 222 VRQQQEEL-IRRREIETELRQQTQLLDLSDEAIIALNINRKIIYWNRGAERL---YGWTK 277

Query: 234 QKAIGESRK-LFKEEIKKRMISSSAL--EKNFCET--VSTLEHGNNKSYKIVRVLN--SF 286
           ++A+G+  + + + +    + ++     E+ + E   +     G     +  +VL   S 
Sbjct: 278 EEALGQKIESMLQTQFPISLEAAHQTIIEQEYWEGELLHIRRDGQPLIVESRQVLQRDSK 337

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAF 345
           G   I ++ ++++T   QL    +I                L+      +EL  I    F
Sbjct: 338 GNPEIILETNRDLTRRKQLEENLKI------------NEERLRLT----LELTGIGSWDF 381

Query: 346 LATNPSNDELLEFLRSANKLPEQ--LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                +        R +   P+    ++  W E I S  +     K    + N   L V 
Sbjct: 382 NLKTEAFISSDNVFRMSGLDPKTAAPSYALWLEQIHSDDRERVEQKLQEAIQNQTPLEVK 441

Query: 404 VTS-NPRGGTIWMF--------------------ENLTVQVDLETKYNTLVKVQGETIDH 442
               +P+G   W+                      ++T Q + E       +       +
Sbjct: 442 YRVVHPKGHICWILSKASFICDQTGQATRMLGIWMDITAQKETEFALKQGKETLKLFFKY 501

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +  GV V   +    +++  +   +K   +    G  +  I       + +     +  A
Sbjct: 502 VPAGVVVVDRNMCYLMASQRWLDDYKISSDDTLQGHSLYQIVPEIPPKWRQIHQLCVKGA 561

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                ++      GT + L   ++ +       A  ++   N+++  +AE AL E N  L
Sbjct: 562 TEKCDEELFIRSDGTEQWLRWEIVPWYDNLGKEAGIIIFTENISERKQAEIALQELNSQL 621

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            +    +   +Q     +           +LL+  KL     K+ Q ++    ++
Sbjct: 622 EQRIIERTEQLQRAKKNIEQ---------ELLERKKLERELRKREQLLDGFFNAA 667


>gi|308270675|emb|CBX27286.1| hypothetical protein N47_I07060 [uncultured Desulfobacterium sp.]
          Length = 701

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 171/402 (42%), Gaps = 39/402 (9%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                E KY  LV +           +  +  DGRI   N   +  +   E  +     I
Sbjct: 303 ELRASERKYRELVMLANSI-------ILRWSDDGRITFLNEFGQRFFGYSETEILGQHVI 355

Query: 481 -----------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVL 526
                      RN+         +   ++         + ER  +  T +++   S  + 
Sbjct: 356 GTIVPENETTGRNLRPLMEDILADPQKFERNINENMRRNCERVWIDWTNKVVLDESGRIK 415

Query: 527 EY-----SIIPLPNAQTMLTFVNVTDSVRAER----------ALTEKNEALRKADEIKNS 571
           E       I     A+  ++ +N      A+            L    E    AD IK +
Sbjct: 416 EILSIGSDITDRKQAEEQISRLNNDLRRHAKELEQRVADRTAELVIAKERAESADRIKPA 475

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PL +IIGFT ++     G LN +Q + +  + +SS  LL+L+ND+LD++
Sbjct: 476 FLATMSHELRTPLNSIIGFTGIMLQELAGPLNEEQRKQLTMVQSSSRHLLSLINDVLDIS 535

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG ++L+ ++  L   + ++ + +     +  + ++V     + +   D++RL Q+ 
Sbjct: 536 KIEAGQLELSVTSFELRPSIEKMVKLVLPMAKKKGLDLRVYIADDINTAATDQRRLEQVV 595

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RG 749
             +L+NA+ F+ KG  V +    +N  ++ SV + G+ I  +    +F  F         
Sbjct: 596 LNLLNNAVKFTEKG-YVHISCRIENDKYLLSVSDTGTGIRPEELSGLFQPFHQIDTGLTR 654

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  G GLGLSI +  +++ GG + + S     +T   R P K
Sbjct: 655 KYEGTGLGLSICKRLLDMMGGTIDVQSQWGKGSTFIVRFPGK 696


>gi|313682762|ref|YP_004060500.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155622|gb|ADR34300.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 977

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/506 (19%), Positives = 202/506 (39%), Gaps = 25/506 (4%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           VS  I ++++     +IL  +T ++ I D NR L       + + E+ ++ L +     +
Sbjct: 124 VSAPIKIDNEQIGEAKILFEITDSLKIIDDNRDLTL----LLIMIEMTISTLVSYIIGHK 179

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L   L       +++      +++ S     E    +  L +     +       G    
Sbjct: 180 LTNALNELTFYAQRIAKDEDAQSVNSETTGEEIAVLSKTLHHMHKRIIERNKTLNGVVAK 239

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E++  + +LE K      +    ++  +  +A+   DG +   NP         +  +
Sbjct: 240 LKEDIIQRNELENKLLFEKSINKTLVESANAIIAMLNRDGVMININPYGERFTGFTQQEI 299

Query: 475 SPGTHI--RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +   +   R +                   I  SF +   S  G      + + E+S   
Sbjct: 300 ASEPYFWARFLPPEMHDKVVNIISNARKGTITRSFQNAWVSKDGI-----ERMFEWSNAL 354

Query: 533 LPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           + + +  + +     +++T+    +  L +  EA   A + K  F+ ++S+E+R+PL  I
Sbjct: 355 VLDEKGQMQYVTTIGIDITEQKERQLELEKAKEAAETAAKAKADFLANMSHEIRTPLNGI 414

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T+L+  +    L  KQ  ++E  + SS  LL+++NDILD + ++AG   L      L
Sbjct: 415 IGLTELVLKT---DLEPKQRDFLEKSNLSSHALLDIINDILDYSKIEAGKFDLENKPFEL 471

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-- 705
           N+++  +      +  +  I +           + D  RL QI + ++ NA+ F+  G  
Sbjct: 472 NNVIQNIMSLFEFQAVQKGIILTYDIQLNENVMIGDALRLTQILTNLVGNAVKFTESGHI 531

Query: 706 STVILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
              ++    +  D    FSV++ G  +  +    +F  F         +  G GLGL+I 
Sbjct: 532 GIRVISTDENEEDIRLQFSVEDTGIGMNAEAQNKLFQEFSQADTSITRKYGGSGLGLAIS 591

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
           +  + + GG + + S +   +     
Sbjct: 592 KQLVQMMGGDIWVESEEGIGSRFIFT 617


>gi|299148913|ref|ZP_07041975.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513674|gb|EFI37561.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 657

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 114/513 (22%), Positives = 210/513 (40%), Gaps = 42/513 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            K   + +       +L    +A+  +D       F N  F  L   D   +      D+
Sbjct: 34  EKSELIRENSQEILSVLAAHQIALWEYDIITGKCSFSNDYFFTLGLKDAGIIFE--DIDD 91

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKS------------SETHKDTWHLPNGQTLHV 402
              F+      PE + +  +K+    +  S            SE  K  W   +  +   
Sbjct: 92  FYRFIH-----PEDIEF--YKQAFAEMLSSDSKTSQIRVRCISEQGKVIWLEDHFLSYKE 144

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              S+P     +   N+T Q + E     L +   + I+ L E          I + +  
Sbjct: 145 SCESHPGKLLAYTV-NVTSQCEKEQHIKYLEEYNRKIIEALPE---------FIFIFDDN 194

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL 520
           F                +  +     R     +  DLF   I     D + K ++  LE+
Sbjct: 195 FFITDVLMAPGTILLHPVEVLRGADGRSIYSPEVSDLFICNIRECLRDGKLKEIEYPLEV 254

Query: 521 -LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             S    +  I P    + +    ++ D ++  + L E       AD++K+ F+ ++S+E
Sbjct: 255 DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHE 314

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++++    +     ++ +Y+E I  +S +LL L+NDILDL+ +++G  +
Sbjct: 315 IRTPLNAIVGFSEIIA---VTESEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSE 371

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +++  + +  L+ EV++    KM   N+ +KVI          DR R++Q+    LSNA+
Sbjct: 372 MHFQQVEIAGLVEEVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAI 430

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             + KGS + L    +       V + G  I ++    +F RF       Q  G GLGLS
Sbjct: 431 KNTEKGS-ITLGLKHEGSWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ--GTGLGLS 487

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +S +   GG + ++S     +T    +P +E
Sbjct: 488 ICKSIVERLGGRIEVTSELGQGSTFALYLPYQE 520


>gi|119473025|ref|ZP_01614847.1| Signal transduction histidine kinase [Alteromonadales bacterium
           TW-7]
 gi|119444603|gb|EAW25915.1| Signal transduction histidine kinase [Alteromonadales bacterium
           TW-7]
          Length = 806

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 121/683 (17%), Positives = 245/683 (35%), Gaps = 82/683 (12%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEG 230
           + +  E  +      +L+     +K +FD+        D  +G  +  N +         
Sbjct: 6   NNLEQENTKLKRAIAELTYERDKYKKIFDASADAYSVIDLSSGKFIECNQAAIDMHGVNS 65

Query: 231 I------VFQKAIGESRKLFKEEIK-KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
           +             E +          +   + A+E+ F          +  ++  +  L
Sbjct: 66  MGNFLNLSPADLSPELQPCGNRSDALAKAHINCAIEQGFHSFKWIHSRLDGTTFNCLVSL 125

Query: 284 NSFGEAG------IAIDVSKEITVNDQLT------------------HTYEILHNLTVAI 319
                 G      +  D+S       Q++                     + +    V I
Sbjct: 126 TGLFIEGSQLILAVGRDISDIEIAQKQISTEASEKQRFKQAFLGEKEKFEKFVDLAPVGI 185

Query: 320 AIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN-WKTWKEN 377
           AI    +   +F N  F  +    +  L            +      PE+    +  +  
Sbjct: 186 AINSISDGSFEFVNEEFGRITGYSVDELNQ----------MDYWQLTPEKYEKQEHEQLE 235

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVI-----VTSNPRGGTIW-MFENLTVQVDLETKYNT 431
           + + Y     ++  +   NG    V+     +T +     IW + ++++ Q   E +  T
Sbjct: 236 LLAKYGQYGPYQKEYIHKNGHVYPVLLSGIKITDSKGETFIWSVVQDISHQKQSEQQIKT 295

Query: 432 LVK-------VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT------ 478
             +             D    GV          + +     L+   E   S         
Sbjct: 296 AKEKVDSFALRMQLANDSAGIGVWELDLKTEKLVWDSWMYKLYGISELEFSCTYQAWLDR 355

Query: 479 -HIRNIAATCSRYYNESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            H+ ++           +G  ++     +   D   ++++ + E+L DS      +    
Sbjct: 356 VHVDDVEHNERMLDEAINGVGIYDPEFRVVHPDGNIRTIKASAEILRDSHGAAIKV---- 411

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +    +VT+ V A R L +   A   A + K+ F+ ++S+E+R+P+  I+G   LLK
Sbjct: 412 ---VGVNYDVTEKVDAIRKLFDAKLAAENAAQSKSDFLANMSHEIRTPMNAILGGLQLLK 468

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   SL  +    ++  S S   LL ++NDILD + +++  ++L  ++  L+++L+ + 
Sbjct: 469 NT---SLPEELRAVLKNASYSGQSLLTIINDILDYSKIESNQLQLEKASFSLSEVLDSIT 525

Query: 656 QSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LK 711
             + + + E  I   V  D      +V D  R+ QI   + SNA+ F+ KGS  I    K
Sbjct: 526 YDLDSLVSEKRIGFTVNKDESYYEYWVGDLVRVKQILLNLSSNAVKFTDKGSVKINASSK 585

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                      V ++G  + +++ + +F RF        R   G GLG+SI  S + + G
Sbjct: 586 IYEGKEAIYLEVVDSGIGMSKEVTEHIFERFTQADSSTTRKYGGTGLGMSITISLVKMMG 645

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + I S     TT+  ++P  +
Sbjct: 646 GEIDIQSKQGLGTTVTIKLPLPK 668


>gi|289668325|ref|ZP_06489400.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 674

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/514 (19%), Positives = 197/514 (38%), Gaps = 57/514 (11%)

Query: 308 TYEILHNLTVAIAI----FDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFL 359
            +EI HN+     +    FD  + + +     N +F     +    L  +          
Sbjct: 28  YHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNALNVSI--------- 78

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWM 415
              N LPE    + W +    V ++    H +       +   V    V    +G    +
Sbjct: 79  --RNLLPEHE--QEWFDRYGHVARTGNRIHFEMQAKALKRWYSVDAFRVGPPEQGRVAIL 134

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F ++T +  +E +            D L   V V    G ++  N A+   +  + +  +
Sbjct: 135 FMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT 194

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSDSVLEYSIIP 532
                    +      +  D       +  S  ++   R  ++          +E +  P
Sbjct: 195 --------VSAWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRHDGQWRWIEMTATP 246

Query: 533 LPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYEL 580
             +A      +  +     E R +    E L +++            +K+ F+  +S+EL
Sbjct: 247 RYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHEL 306

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVDAGIM 638
           R+PLT I+G+++LL       +   Q  Y  +  I++S+     L++D+LDL+++  G +
Sbjct: 307 RTPLTTILGWSELLLQR----VEEGQPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKV 362

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L   ++ L + + E   +        +  +++         + D  RL Q+   +LSNA
Sbjct: 363 QLEVESLDLVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLLSNA 422

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + F+     + +   RD+G  + SV ++G  I  +    +F RF        R   G+GL
Sbjct: 423 IKFTPAHGRIDVSIERDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGL 482

Query: 757 GLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           GL+IV+  + +HGG V  +S       T   R+P
Sbjct: 483 GLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 516



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 9/143 (6%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +    +      +
Sbjct: 137 DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVS 196

Query: 237 IGESRKLFKE--EIKKRMISSSALEKNFCETVSTLEH-GNNKSYKIVRVL------NSFG 287
                    +    +  + +S   +      V    H G  +  ++             G
Sbjct: 197 AWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRHDGQWRWIEMTATPRYSADGRFIG 256

Query: 288 EAGIAIDVSKEITVNDQLTHTYE 310
            AG + DV+++  +        E
Sbjct: 257 LAGSSPDVTEQREIELAREQLLE 279



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 73/236 (30%), Gaps = 26/236 (11%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N ++++ T         +I       ++E   R                       + Y 
Sbjct: 60  NGAFERYTGLSTNALNVSIRNLLPEHEQEWFDR--YGHVARTGNRIHFEMQAKALKRWYS 117

Query: 279 I----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
           +    V        A + +D+++   V  +L  +      L   +     + D    ++F
Sbjct: 118 VDAFRVGPPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRF 177

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N ++ E + +D+    ++ +     E L   +    Q       +    +       + 
Sbjct: 178 VNSAYGEFFGLDI----SSGTVSAWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRH 233

Query: 391 TWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                +GQ   + +T+ PR        G      ++T Q ++E     L++ +   
Sbjct: 234 -----DGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSA 284


>gi|289665498|ref|ZP_06487079.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 660

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/514 (19%), Positives = 197/514 (38%), Gaps = 57/514 (11%)

Query: 308 TYEILHNLTVAIAI----FDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFL 359
            +EI HN+     +    FD  + + +     N +F     +    L  +          
Sbjct: 14  YHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNALNVSI--------- 64

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWM 415
              N LPE    + W +    V ++    H +       +   V    V    +G    +
Sbjct: 65  --RNLLPEHE--QEWFDRYGHVARTGNRIHFEMQAKALKRWYSVDAFRVGPPEQGRVAIL 120

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F ++T +  +E +            D L   V V    G ++  N A+   +  + +  +
Sbjct: 121 FMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT 180

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSDSVLEYSIIP 532
                    +      +  D       +  S  ++   R  ++          +E +  P
Sbjct: 181 --------VSAWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRHDGQWRWIEMTATP 232

Query: 533 LPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYEL 580
             +A      +  +     E R +    E L +++            +K+ F+  +S+EL
Sbjct: 233 RYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHEL 292

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVDAGIM 638
           R+PLT I+G+++LL       +   Q  Y  +  I++S+     L++D+LDL+++  G +
Sbjct: 293 RTPLTTILGWSELLLQR----VEEGQPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKV 348

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L   ++ L + + E   +        +  +++         + D  RL Q+   +LSNA
Sbjct: 349 QLEVESLDLVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLLSNA 408

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + F+     + +   RD+G  + SV ++G  I  +    +F RF        R   G+GL
Sbjct: 409 IKFTPAHGRIDVSIERDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGL 468

Query: 757 GLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           GL+IV+  + +HGG V  +S       T   R+P
Sbjct: 469 GLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 502



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 9/143 (6%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +    +      +
Sbjct: 123 DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVS 182

Query: 237 IGESRKLFKE--EIKKRMISSSALEKNFCETVSTLEH-GNNKSYKIVRVL------NSFG 287
                    +    +  + +S   +      V    H G  +  ++             G
Sbjct: 183 AWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRHDGQWRWIEMTATPRYSADGRFIG 242

Query: 288 EAGIAIDVSKEITVNDQLTHTYE 310
            AG + DV+++  +        E
Sbjct: 243 LAGSSPDVTEQREIELAREQLLE 265



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 73/236 (30%), Gaps = 26/236 (11%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N ++++ T         +I       ++E   R                       + Y 
Sbjct: 46  NGAFERYTGLSTNALNVSIRNLLPEHEQEWFDR--YGHVARTGNRIHFEMQAKALKRWYS 103

Query: 279 I----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
           +    V        A + +D+++   V  +L  +      L   +     + D    ++F
Sbjct: 104 VDAFRVGPPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRF 163

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N ++ E + +D+    ++ +     E L   +    Q       +    +       + 
Sbjct: 164 VNSAYGEFFGLDI----SSGTVSAWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRH 219

Query: 391 TWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                +GQ   + +T+ PR        G      ++T Q ++E     L++ +   
Sbjct: 220 -----DGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSA 270


>gi|296122662|ref|YP_003630440.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015002|gb|ADG68241.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 810

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 154/388 (39%), Gaps = 19/388 (4%)

Query: 420 TVQVDLETKYN---TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +  V+LE +     + V    E     + GV +    GR++  N  F  +       L  
Sbjct: 248 SRAVELERQVRNRTSEVNRLAEIARRTANGVVITDRKGRVEWINEGFTRICGYTIEDLRG 307

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAA--------IITSFDDERKSLQGTLELLSDSVLEY 528
                 +    +         D            +  S +     ++  ++ L D   E 
Sbjct: 308 KKPGDVLQGPNTNPMAIQRIGDAIRQGLPVTEEVVNYSKNGREYYIRIEIDPLRDERGEI 367

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S      +       +  +  R    +     A   A+  K  F+ ++S+E+R+P+T I+
Sbjct: 368 SGFMAIESDITEQHQHQEELKRHAEEMERLRNAAESANRAKTDFLANMSHEIRTPMTAIL 427

Query: 589 GFTDLLKT--SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           G+T+LL       G+ ++++ + +E I  +   LL ++NDILDL+ ++AG+M +      
Sbjct: 428 GYTELLAENSDPAGTTSAERIECIETIRRNGDHLLEIINDILDLSKIEAGMMTVEKIPTD 487

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+ +V+  +  K     I +++     L + +  D  RL QI   +L NA+ F+  G
Sbjct: 488 LAYLVKDVESLMQFKATRKGINLRLNLVEPLPTIIHTDPVRLKQILVNLLGNAIKFTEHG 547

Query: 706 ST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
                V   A    G  +  V + G  +       +F  FV       R   G GLGL I
Sbjct: 548 EVSMKVHTDANTFPGLIVIDVVDTGIGMTPQQMSQLFGAFVQADTSTTRKFGGTGLGLRI 607

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +S   L GG+++ISS     +     I
Sbjct: 608 SKSLAQLLGGNITISSEPGKGSVFQLTI 635



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 48/158 (30%), Gaps = 20/158 (12%)

Query: 292 AIDVSKEITVN-DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           A+++ +++     ++    EI       + I D+   +++ N  F  +    +  L    
Sbjct: 250 AVELERQVRNRTSEVNRLAEIARRTANGVVITDRKGRVEWINEGFTRICGYTIEDLRGKK 309

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSNP 408
             D           L          + I    +      +    +  NG+  ++ +  +P
Sbjct: 310 PGD----------VLQGPNTNPMAIQRIGDAIRQGLPVTEEVVNYSKNGREYYIRIEIDP 359

Query: 409 R-------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                    G + +  ++T Q   + +     +     
Sbjct: 360 LRDERGEISGFMAIESDITEQHQHQEELKRHAEEMERL 397


>gi|89094461|ref|ZP_01167401.1| two-component system sensor protein [Oceanospirillum sp. MED92]
 gi|89081353|gb|EAR60585.1| two-component system sensor protein [Oceanospirillum sp. MED92]
          Length = 1314

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 116/628 (18%), Positives = 223/628 (35%), Gaps = 68/628 (10%)

Query: 213  GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
            GD+      +   + T+      A+    +      K         E+     +      
Sbjct: 552  GDLQMLTERFLGISRTQHAFTGFALQRGDEPPLSGDKATPELIQFTERLLAGVIGASSA- 610

Query: 273  NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH--TYEILHNLTVAIAIFDQNRYLQF 330
              +      +       G  + +  E +   +         + N+++ I++ DQ   L  
Sbjct: 611  --RIVLASTLRGKDMHIGDVVTIVDEASQALRFNRSLLQSTIENISLGISVVDQQMRLVA 668

Query: 331  HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
             NR +VE+++     +      +E+  F     +     N +  K+    V KS++ H  
Sbjct: 669  WNRVYVEMFDYPEGLICVGRPIEEVFRFNAMKGEYGPGNNDEQVKKR-LRVLKSAKRHSY 727

Query: 391  TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
                P+G  L V     P GG +  + ++T    +E       +      D++   +A  
Sbjct: 728  ERFRPDGTVLEVRGNPMPNGGYVNTYMDITNHKHVEDALRESEQNIRIYTDNVPVLIAYL 787

Query: 451  GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             P+ R    N A+   +  +   +S           C +   E +       I  + + +
Sbjct: 788  DPERRYLFINKAYAETFDLDRTSIS--------GQACHKIMTEEEYELRSPYITAALEGK 839

Query: 511  RKSLQGTL--ELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALR 563
            R+  + TL  +  +D   E   IP              + ++T+  +AE+AL E NE L 
Sbjct: 840  RQRFETTLPSKDGADRFAEVKYIPHIGEYGDVLGYFTLYQDITERRKAEKALKETNENLE 899

Query: 564  KADEI---------------------------------------KNSFVQHVSYELRSPL 584
            +                                           K  F+   S++L  PL
Sbjct: 900  QRVRERTHALSVVNKELRKENTIRSLMEDELRQAKSDAEDANLGKTRFLASASHDLLQPL 959

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
                 FT  L      S + +  Q V+ ++ S T    L+  ILD++ +DAG ++ + + 
Sbjct: 960  NAARLFTSALAQQ---SHSEETRQLVDNLNGSLTAAEELITAILDISKLDAGALEPSITD 1016

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              L+D+   +         + N++ + +   K+    +D+Q L +I    LSNA+ ++ +
Sbjct: 1017 FALDDMFTALSTEFTAVAEKKNLQFQFVQCKKV--VRSDQQLLRRIIQNFLSNAIRYTQE 1074

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
            G  ++L   R        V + G  I ED    VF  F    +    Q +G+GLGL+I E
Sbjct: 1075 G-KILLGCRRRKNMLRIEVWDTGVGIAEDKISEVFEEFRRIDNPKHSQVQGLGLGLAITE 1133

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIPS 790
                +    +++ S     T  +  IP 
Sbjct: 1134 RIARMLNHKLNVRSWPTKGTVFSVDIPL 1161



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 57/178 (32%), Gaps = 20/178 (11%)

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
            +   +++ G    +  ++        Y ++         L       ++  D++  L+ 
Sbjct: 732 PDGTVLEVRGNPMPNGGYV------NTYMDITNHKHVEDALRESEQNIRIYTDNVPVLIA 785

Query: 208 HRDQAGDILWANISYK-----KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
           + D     L+ N +Y        T   G    K + E     +      + ++   ++  
Sbjct: 786 YLDPERRYLFINKAYAETFDLDRTSISGQACHKIMTEEEYELRSPY---ITAALEGKRQR 842

Query: 263 CETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHN 314
            ET    + G ++  ++  + +        G   +  D+++       L  T E L  
Sbjct: 843 FETTLPSKDGADRFAEVKYIPHIGEYGDVLGYFTLYQDITERRKAEKALKETNENLEQ 900


>gi|163739340|ref|ZP_02146751.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161387410|gb|EDQ11768.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 754

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 167/387 (43%), Gaps = 33/387 (8%)

Query: 421 VQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            Q++ + +   L   +   + ++ ++ V +    GRI   N AF  +            +
Sbjct: 230 AQINAKLQAQQLQSQRLALVAENANDSVFLMDEKGRISWVNEAFTRITGY--------RY 281

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ-GTLELLSDS------VLEYSIIP 532
              I        N   G D   A++ + +  R + +   LE+ +         LE + +P
Sbjct: 282 DEAIGKMPGALLN---GDDTDMAVVRALEKGRATGKPFRLEICNRRKDGQLLWLETNQVP 338

Query: 533 -LPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            L +  T+ T      +VT + + E+ L +   A  +   +K+ F+  +S+E+R+P+  +
Sbjct: 339 MLRDDGTVETIIAVERDVTAAKQYEQQLKDARIAAEEGARVKSEFLATMSHEIRTPMNGV 398

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG   +L+ ++   L+ +Q  Y + I  S+  LL+L+ND+LDL+ +DAG + L+     L
Sbjct: 399 IGMAQMLERTQ---LDEEQKLYADTILGSARTLLSLINDVLDLSKMDAGEVILSEVDFDL 455

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
                +  Q    +  E  I + +     +   +  D +RL Q+   ++ NA+ F+  G 
Sbjct: 456 PACFQQTLQLFEPQAQEKGITLDLNIAPDVPRIINGDDRRLRQVLLNLVGNAVKFTDTGG 515

Query: 707 T-VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
             V +  +R        FSV + G  I ++    +F RF        RR  G GLGL+I 
Sbjct: 516 VGVAVTTSRVGDRLRLRFSVTDTGIGIAKEKQDQIFERFSQADAAITRRFGGTGLGLTIS 575

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
                  GG + ++S     +  +  +
Sbjct: 576 RLLCEAMGGEIDVTSDPGKGSCFSVHL 602



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE- 227
           L++   + +LA+   K +          ++ ++ +  V+  D+ G I W N ++ + T  
Sbjct: 220 LAMALQHKQLAQINAKLQAQQLQSQRLALVAENANDSVFLMDEKGRISWVNEAFTRITGY 279

Query: 228 --TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV-STLEHGNNKSYKIVRVL- 283
              E I        +       + + +    A  K F   + +  + G     +  +V  
Sbjct: 280 RYDEAIGKMPGALLNGDDTDMAVVRALEKGRATGKPFRLEICNRRKDGQLLWLETNQVPM 339

Query: 284 -----NSFGEAGIAIDVSKEITVNDQLTHTY 309
                       +  DV+       QL    
Sbjct: 340 LRDDGTVETIIAVERDVTAAKQYEQQLKDAR 370


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
            29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
            [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/541 (18%), Positives = 197/541 (36%), Gaps = 68/541 (12%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             E  + +        L  + + I  ++        +     L+ I+           +  
Sbjct: 824  AEAALRESQERLALTLEAVNLGIWDWNITTNQIIWSEGHARLFGIESEKFDGTYEAFQAC 883

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRG-- 410
             +      L E +N    +       K+  +H+     P+G    +  T     N  G  
Sbjct: 884  IYPEDRGGLAEVINSARQQ-------KTDYSHEFRIISPDGNIHWIEGTGKLYYNEMGEA 936

Query: 411  -GTIWMFENLTVQVDLETKYN--------------------------TLVKVQG------ 437
               + +  ++T +  +E                               L + Q       
Sbjct: 937  VRMLGIVRDITSRKQIEATLQKVNNELELRVAERTAELVNVNRQLQSELDERQRVEEALR 996

Query: 438  -------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                     +D   + +     + +I L N     ++      +        I    ++ 
Sbjct: 997  ISQVRLARILDIADDAIISINGNQQITLFNQGAEKIFGYSAEAIIGQRLDTLIPQRFTQA 1056

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
            + +       A  +     ER+ + G  +  ++   E SI      + +   V + D   
Sbjct: 1057 HRQHVADFGQAPNLARRMGERREIFGRRQDGTEFPAEASISKFQLDKEVFYTVILRDITE 1116

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             ++            + +K+ FV  VS+ELR+PLT+I G   +L +  L + + +  + +
Sbjct: 1117 RKQ-----------IERMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLPADSEQGRRLL 1165

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E  + S+  L+ L+NDILD+  +++G +K+   +  L DL+      +    ++  +++ 
Sbjct: 1166 EIATDSTERLVRLINDILDIERIESGRVKMERESCNLTDLIESAVSIMRPLANKAGVKLS 1225

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            V           D  R++Q  + +LSNA+ FS+   TV L A +   + + +VK+NG  I
Sbjct: 1226 VSHPS--IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQQYGDELLVTVKDNGRGI 1283

Query: 731  PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            P D   S+F RF        R   G GLGL+I +S +  HGG +   S     +     +
Sbjct: 1284 PADKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIVQQHGGRIWAESVLSEGSNFYFTL 1343

Query: 789  P 789
            P
Sbjct: 1344 P 1344



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 9/151 (5%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF-- 233
           SE      K    S   + ++ +F++    V      G +L  N +     E +      
Sbjct: 508 SESRGIGEKNSPPSPSFTDWRTIFNAEPECVTIVATDGTLLDINPAGVAAIEADSAGAVI 567

Query: 234 -QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG-- 290
            ++        +++  ++   S    E+   E       GN +      V       G  
Sbjct: 568 GKRVYSLVVPEYQQVFRQLNESVCQGEQGTLEFEIITCRGNRRWMATHAVPVRNETDGNL 627

Query: 291 ----IAIDVSKEITVNDQLTHTYEILHNLTV 317
               I  DV++      ++      L  L+ 
Sbjct: 628 VQLSITRDVTQYKQAELEIKRINRTLQTLSD 658


>gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 567

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 162/400 (40%), Gaps = 33/400 (8%)

Query: 420 TVQVD---LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           T Q+     E     + ++Q   + +   G+AV   + +I + N     L   + + +  
Sbjct: 14  TEQMAVYAAEQINENIAELQAYALANADMGIAVLDEEYQILVWNAWLERLTGKKADEVRG 73

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-----------------RKSLQGTLE 519
              +          +        F      F                    R+++Q    
Sbjct: 74  KKLVELFPRFNHSVFRPIFERAFFDGQNRFFSGAFHRYFFPPADGSLLPYIRQNMQVQPA 133

Query: 520 LLSDS---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            + D    +++ + I     +       + +   A+  L    E    A+  K+ F+ ++
Sbjct: 134 RIGDRQYVLIQITDITRQELRVRQLKGLIRELKLAKEELKVSREMAVVANRAKSEFLANM 193

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  I+GF DL   +    LN++QS+Y+  + +++  L+ L+ D+LD++ +++G
Sbjct: 194 SHEIRTPMNAILGFVDL---TLATELNAEQSKYLGMVRSAAQSLMRLLEDVLDISKIESG 250

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKIL 695
            + +      L  +L      ++ K  +  ++++      +    V D  RL Q+   +L
Sbjct: 251 QLVVEQQPFSLASVLRSAVDLLSVKASDKALQLRYQIPAGVPEVLVGDANRLTQVLVNLL 310

Query: 696 SNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           SNA+ F+  G  V    IL+         F V++ G  I  D  ++VF +F        R
Sbjct: 311 SNAVKFTDAGEVVLGLDILEQDHRQISLRFYVRDTGIGIAPDRLEAVFEKFYQVDSSSTR 370

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           R  G GLGL+IV   +   GG V + S     +T    +P
Sbjct: 371 RFGGSGLGLAIVRQLVENMGGRVWVESELGKGSTFYVTLP 410



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 16/160 (10%)

Query: 292 AIDVSKEITVNDQLTHTYEI-------LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           A   ++++ V         I       L N  + IA+ D+   +   N     L      
Sbjct: 10  AQGTTEQMAVYAAEQINENIAELQAYALANADMGIAVLDEEYQILVWNAWLERLTGKKAD 69

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI- 403
            +      +    F  S  +   +  +   +   FS       H+  +   +G  L  I 
Sbjct: 70  EVRGKKLVELFPRFNHSVFRPIFERAFFDGQNRFFS----GAFHRYFFPPADGSLLPYIR 125

Query: 404 ----VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               V     G   ++   +T     E +   L  +  E 
Sbjct: 126 QNMQVQPARIGDRQYVLIQITDITRQELRVRQLKGLIREL 165


>gi|150017917|ref|YP_001310171.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904382|gb|ABR35215.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 754

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/499 (18%), Positives = 200/499 (40%), Gaps = 39/499 (7%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            + + N   +I +  ++  + + N+  +E++      L          E  R        
Sbjct: 123 RDFIDNALESILVVSRSGEILYGNKKAIEMYGYSFDELVNLNIFTLRNEDSREFT----- 177

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLTVQV 423
                 ++ +          K   H  +G    V V S       R   + +  +++   
Sbjct: 178 ------QDQLNKALDRGIKFKSYHHKKDGTRFPVEVRSVCSNKKSRDVAVSIIRDIS--- 228

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D+E  +    K+   ++D L +   +F  +  I   +    + +  +E  +      R I
Sbjct: 229 DMERLFKDS-KIFSISLDILDDPFVIFDKEMNISRWSKGAETKFGFKEADIIGNDMRRLI 287

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--------LLSDSVLEYSIIPLPN 535
                    +         +I  ++  R   +G L         +  D+ L + ++ +  
Sbjct: 288 PKDKLNESQKLIDMITKGNVIKDYETVRIDKEGNLVNVLMSASPIYDDNNLFFGVVAMYK 347

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             T    +      + E+ L    +   +A++ K+ F+ ++S+E+R+P+  I     LLK
Sbjct: 348 DITDRKLIEKDLREKCEQ-LELLKQKAEEANKAKSIFLANISHEIRTPMNGITAAIQLLK 406

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              L  +N KQ +Y+  ++ S+  +L L+N++LD++ +++G  ++N     L + +N + 
Sbjct: 407 ---LEDINEKQKKYIRILNDSANTVLRLINNLLDMSKIESGTFRINREPFNLKETINNIY 463

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVIL 710
            S+    +   + +    D  +    + D  RL +I S ++SNA+ F+  G       ++
Sbjct: 464 NSLLVTGNSKGLEVSYYLDHNIDFEIIGDELRLKEILSNLISNAVKFTDDGYISFRVSMI 523

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
               D+    F++K++G  I ++    +FN F        ++  G GLGLSI + F NL 
Sbjct: 524 SEDSDSEKIQFTIKDSGIGIDDEFKDKIFNNFTQGNISSMKKYMGTGLGLSISKQFANLM 583

Query: 769 GGHVSISSSDEGVTTINCR 787
            G +S  SS    +T    
Sbjct: 584 NGEISFESSFGKGSTFIFT 602



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 86/252 (34%), Gaps = 29/252 (11%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           +   D+    +    ++G+IL+ N   KK  E  G  F + +  +    + E  +     
Sbjct: 123 RDFIDNALESILVVSRSGEILYGN---KKAIEMYGYSFDELVNLNIFTLRNEDSREFTQD 179

Query: 256 ----SALEKNFCETVSTLEHGNNKSYKIVRV----LNSFGEAGIAIDVSKEITVNDQLTH 307
               +       ++    + G     ++  V     +      I  D+S    +      
Sbjct: 180 QLNKALDRGIKFKSYHHKKDGTRFPVEVRSVCSNKKSRDVAVSIIRDISDMERLFKDSKI 239

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLP 366
               L  L     IFD+   +   ++     +   +   +  +       + L  + KL 
Sbjct: 240 FSISLDILDDPFVIFDKEMNISRWSKGAETKFGFKEADIIGNDMRRLIPKDKLNESQKLI 299

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENL 419
           + +     K N+   Y++    K+      G  ++V+++++P         G + M++++
Sbjct: 300 DMIT----KGNVIKDYETVRIDKE------GNLVNVLMSASPIYDDNNLFFGVVAMYKDI 349

Query: 420 TVQVDLETKYNT 431
           T +  +E     
Sbjct: 350 TDRKLIEKDLRE 361


>gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 927

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/474 (20%), Positives = 190/474 (40%), Gaps = 53/474 (11%)

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            L   P  D L    R   KLP      T +    + Y ++    D + L +   L V+V
Sbjct: 202 ILEYKPQVDTLT---RDILKLPTAQAISTLEAAYTNQYDAATQTADLFRLLSFGCLLVLV 258

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           +    GG   + +          +     +     +  L++      P  +I   N    
Sbjct: 259 S----GGAYLVVQ----------QQRRSNERVSGILSSLTDAFVALNPQWQITYINDKAA 304

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            + + +  +L      ++        + +  G D  +    +  +++K+        S  
Sbjct: 305 EILQADSQQLLNQDFWQS--------FPDVLGADHLSDYRQALKEKQKTSFEVFYPPSQM 356

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------- 565
            LE  + P  +  ++    +VT    AE +L + N+ L                      
Sbjct: 357 WLEIRVYPSVDGLSLFLQ-DVTIRKEAEASLKQMNQELETRVKARTAQLASSMEAAEEAR 415

Query: 566 ------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                 ++ K+ F+ ++S+ELR+PL  IIG++++L+              ++ IS S+  
Sbjct: 416 EKAEEANKSKSEFLANMSHELRTPLNAIIGYSEMLEEDAEDMGQDDFVPDLQKISGSAKH 475

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+N +LDL+ V+AG M+L   +  +  ++  +  ++     + +  I +     +G+
Sbjct: 476 LLELINAVLDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQSNMISLHCPENIGT 535

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD+ ++ Q    +LSNA  F+  G   +  +     + +FS+K+ G  +  +  + VF
Sbjct: 536 LYADQTKVRQSLYNLLSNACKFTESGEVSLTISEDAGEEVVFSIKDTGIGMTPEQLEKVF 595

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             F        R   G GLGL+I + FI + GGH+S++S     T     +P +
Sbjct: 596 KAFTQADASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGTEFTIHLPRQ 649


>gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 909

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 13/248 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R    + +  + LR+A+E K+ F+ ++S+E+R+P+  I+G T+LL  ++   L  +Q++
Sbjct: 369 NRMAEMIDDHVQELRRANEAKSDFLANMSHEIRTPMNAILGMTELLGETQ---LTPEQAE 425

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV     +   LL L+NDILDL+ V++G M+L  +   L +L+ +  + +A + H+  + 
Sbjct: 426 YVRICRGAGDTLLYLINDILDLSKVESGRMELQLTQFNLVELVEKTAELMAVRAHKKGLE 485

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIF 721
           +   I  G     V D  RL QI   ++ NA+ F+ +G  ++L+  RD           F
Sbjct: 486 LVCHIFPGVPSQVVGDPGRLQQILINLMGNAVKFTERGE-IVLQVERDPDQPGEAGAIRF 544

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  I  D  + +F RF        RR  G GLGL+I    + +  G + + S   
Sbjct: 545 AVSDTGIGIAADKKEVIFERFSQADSSTTRRYGGTGLGLTISRYLVEMMKGRIWVESELG 604

Query: 780 GVTTINCR 787
             +T    
Sbjct: 605 KGSTFYFT 612


>gi|94263692|ref|ZP_01287500.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455891|gb|EAT06050.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/445 (20%), Positives = 176/445 (39%), Gaps = 22/445 (4%)

Query: 366 PEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRG-----GTIWMFE 417
           PE+  W   W   +    +     +      +G  +   V       G     G      
Sbjct: 68  PEEAEWVGAWFTKLVERREPFRGLEHCSLKSDGSIVWQRVSGVPILDGAGELRGYRGAAL 127

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +           K     +D+  EG      + ++   N A   ++  E   +  G
Sbjct: 128 DITQEKLARQALEEREKRLALILDNTVEGFITMDAERQVLSFNKAAERIFGYEAEEVL-G 186

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            +++ +        ++    +   + +       + +QG  +      L+ ++      +
Sbjct: 187 QNLKMLMPEPFHSQHDQYVENYLTSGVKKIIGTGREVQGRRKTGEVFPLQLAVSETLVGE 246

Query: 538 ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               + +  ++T+  R E    +  E    A   K+ F+ ++S+E+R+P+  IIG   L 
Sbjct: 247 ERLFVGSIQDITERKRQEALQRQAKETAEAASRSKSEFLANMSHEMRTPMNVIIGLGQLA 306

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S+      K   Y+E I+AS+T LL L+ND LDLA ++ G M ++     L+D+LN++
Sbjct: 307 LKSE-PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQVPFDLSDILNKL 365

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++ +  +  E  +++       +    V D  RL Q+   + SNA+ FS KG  V L   
Sbjct: 366 EKLMGERAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSEKGE-VSLSFE 424

Query: 714 RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             +          +V++ G  I  +  +++F  F        R   G GLGLSI    + 
Sbjct: 425 MADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGLGLSIANRLVE 484

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           L GG + + S     ++     P +
Sbjct: 485 LMGGKLEVKSEPGQGSSFFFNCPLR 509



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 78/279 (27%), Gaps = 38/279 (13%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQKAIGESRKLF 244
           KL+     F+ + ++    +W  D  G   + +   +       E  + +          
Sbjct: 11  KLTEAEQRFRDVTEAAGEYIWELDNNGLYTFVSKPIEAILGVPVEQALGRTPFDFMPPEE 70

Query: 245 KEEIKKRMISSSALEKNFC--ETVSTLEHGNNKSYKIVRVLNSFGEA------GIAIDVS 296
            E +           + F   E  S    G+    ++  V    G        G A+D++
Sbjct: 71  AEWVGAWFTKLVERREPFRGLEHCSLKSDGSIVWQRVSGVPILDGAGELRGYRGAALDIT 130

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +E      L    +    IL N        D  R +   N++   ++  +   +      
Sbjct: 131 QEKLARQALEEREKRLALILDNTVEGFITMDAERQVLSFNKAAERIFGYEAEEVLGQNL- 189

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-------HKDTWHLPNGQT--LHVI 403
                       +PE   + +  +     Y +S          +       G+   L + 
Sbjct: 190 ---------KMLMPEP--FHSQHDQYVENYLTSGVKKIIGTGREVQGRRKTGEVFPLQLA 238

Query: 404 VTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGET 439
           V+    G     +   +++T +   E       +     
Sbjct: 239 VSETLVGEERLFVGSIQDITERKRQEALQRQAKETAEAA 277


>gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 687

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 165/385 (42%), Gaps = 19/385 (4%)

Query: 424 DLETKYNTLVKVQGETIDH-LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            L  ++ +    +   +D  L   +     +G++ L N    +L     + +   + + +
Sbjct: 42  RLLDRFQSANAQRQAVLDAALQMSIIATDMNGKVLLFNRGAETLLGYASDEVVGQSTLLD 101

Query: 483 IA----------ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                          +   +      LFA  +       +      +  +   +  SI P
Sbjct: 102 FLLPEEVAAHADELAAELGHAVSPETLFAEYVRHGLISAREWTYRRKDGTRFPVSLSITP 161

Query: 533 LPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           L       A T+   +++T+   AE       +A   A++ K+SF+ ++S+ELR+PL  I
Sbjct: 162 LKGGDGGLAGTLAAAMDITERKWAEEEAHRAKQAAEAANQAKSSFLANMSHELRTPLNAI 221

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG++++L+              +  I ++   LL L+ND+LD++ ++AG M L      +
Sbjct: 222 IGYSEMLQEEMEDLGQDDLIPDLAKIHSAGRHLLTLINDVLDISKIEAGKMDLFVEAFEI 281

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++ +V  +I+  + +N   + V   G++G+  AD  ++ Q    +LSNA  F+S G T
Sbjct: 282 APMVADVVATISPLIQKNGNTLVVDGAGEIGAMEADLTKVRQTLFNLLSNASKFTSDG-T 340

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           + L   R      F+V + G  +       +F  F        R   G GLGL+I  +F 
Sbjct: 341 ITLSTRRQGEWIEFAVADTGIGMAPAELDRLFQAFSQADASTTRKFGGTGLGLAISRTFC 400

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            + GG ++++S     TT   R+P+
Sbjct: 401 RMMGGDIAVASEPGRGTTFTVRLPA 425


>gi|304412838|ref|ZP_07394438.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|304348801|gb|EFM13219.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
          Length = 964

 Score =  296 bits (757), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/509 (19%), Positives = 204/509 (40%), Gaps = 27/509 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++   +         IL +      I +    +   N +   L+      L        L
Sbjct: 66  ARTKALEAANIRLNTILDSAVDGFVIINDKGTITDINPAISRLFGYAHNELIGQNVAIFL 125

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRG 410
              +RS++        +T    I    +     +      +GQ   +     ++  + + 
Sbjct: 126 PFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQR-----KDGQLFPIALSVSLMKIDNKV 180

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             I + ++L+     E        V   T+    + +     DGR+   N A   L+   
Sbjct: 181 MFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLITIDIDGRVVEFNLAATRLFGYS 240

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYS 529
            +  + G ++  +    S++ +   G + +    +    ++R  L  T +  ++  +E  
Sbjct: 241 RHE-AIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIINKRIELLATCKAGNEIPIELE 299

Query: 530 IIPLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           ++P+     +L      ++++   +E  L    E     +++K+ F+  +S+E+RSPL  
Sbjct: 300 VVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELGNKVKSRFLATMSHEIRSPLNA 359

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G  +LL  SK   LN +Q  +      + + LLN +NDILD + ++AG M L  +   
Sbjct: 360 ILGGVELLLHSK---LNKEQRIHANITREAGSALLNTINDILDFSKIEAGQMVLESNEFE 416

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
            + L+ +V Q +  K ++  +++    D  +  + + DRQRL Q+   ++ NA+ FS  G
Sbjct: 417 PDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQVIHNLVDNAIKFSVSG 476

Query: 706 STVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
            T+ ++    +           V ++G  I E+    +F  F    + H    +G GLGL
Sbjct: 477 -TITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQVHDTHNTNYKGTGLGL 535

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR 787
           +I    I + GG + + S  +        
Sbjct: 536 AICRELITMMGGEIELESELDKGCCFTFY 564


>gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 847

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/513 (18%), Positives = 197/513 (38%), Gaps = 40/513 (7%)

Query: 298 EITVNDQLTHTYEILHNLT--VAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDE 354
           E  +         +         IA  D    L+  N + +++        +     +  
Sbjct: 203 EEELRASKEKYRAVFRTNPILTLIASLDDGHCLE-VNEALLQMTGFSREELIGNRIQDLG 261

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           +     +++ L +QL  +   E      +S  +   T  L + +T  +          I 
Sbjct: 262 IWTDPSASDALHQQLKTQGHFEMKEIQIRSKFSEHKTL-LFSAETRELHGRP----CIIA 316

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +++T + + E       +     ++  ++G+  +         +P ++ +    +  +
Sbjct: 317 AGQDITERNERERLLRESEERYALVLNGTNDGIWDWNLRTMQVYFSPRWKEIIGYRDAEI 376

Query: 475 S----------PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
                            N+ AT  R++   D        +   D   + + G    L D 
Sbjct: 377 RNDLEEWKSRIHPEEFDNVMATHERFFRAEDPVFEVEYRLRHKDGSYRWILGRGACLRDQ 436

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
               S  P   A    +  ++T   + E  L++  E   +A + K+ F+ ++S+E+R+PL
Sbjct: 437 ----SGKPYRMAG---SHTDMTRRKQIEAELSKAKEDAERASKAKSEFLANMSHEIRTPL 489

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           + ++G T+L   + +  L  +  ++++    S   LL ++ND+LDL+ ++AG   L    
Sbjct: 490 SGMLGMTEL---AMMNELTPEVREHLQMARDSGKSLLAIINDVLDLSKIEAGRSNLEQKK 546

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
             L +L +   +S+A       +RI    D +   S + D  RL QI + ++ NA+ F+ 
Sbjct: 547 FSLRELADSTIKSLAVSAKAKGLRIFHAVDTEAPDSLLGDPGRLRQILTNLIGNALKFTE 606

Query: 704 KGSTVILKAARD-----NGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGV 754
           +G TV +    D      G       VK+ G  IPE M + +F  F            G 
Sbjct: 607 RG-TVTVSMTADAVDAPAGKITLRTVVKDTGIGIPESMLEDIFKSFNQGVTSAHATYGGT 665

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL+I +  + + GG +   S     +  +  
Sbjct: 666 GLGLTISKELVEMMGGRIWAESRMGHGSAFHFT 698


>gi|302923768|ref|XP_003053746.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734687|gb|EEU48033.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1371

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 112/676 (16%), Positives = 244/676 (36%), Gaps = 91/676 (13%)

Query: 188  LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR----KL 243
            L   + +   L ++    +    + G + + N + +K  E +  +     G        L
Sbjct: 366  LQKMLLMKDALLNNTQMPILAMWKDGSVTFPNSAARKLFEKDAPLDTSVNGFDLLQYWHL 425

Query: 244  FKEEIKKRMISS-------SALEKNFCETVSTL--EHGNNKSYK-----IVRVLNSFGEA 289
            + E+  +R+  +          E  F      +  E G    +      I         A
Sbjct: 426  YTEDFSRRLDVTEYPISTLLKTETPFSGIRIGMYDEAGKKLVFDMLGEAIRDDSTGDFLA 485

Query: 290  GI--AIDVSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            G+    DV+       Q+    E     I   +   +     +  + F N  F     + 
Sbjct: 486  GVVTGRDVTVMTEEITQIKERDEERFKLICDTMPQLVWTATSDGLVDFWNTRFYNYSGLT 545

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTL 400
                      +         + +  Q  WK           + + +   +     +G   
Sbjct: 546  PENSLGKSWVNAF----HPDDLVEAQRRWKH-------SLNTGDPYMTEYRCQSRDGHWR 594

Query: 401  HVIVTSNPR--------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              +  + P+                ++   +  +       +     I H    +    P
Sbjct: 595  WFLGRALPQRNKETGKVERWFGTCTDVHESIQTKMNAKRTRQQLLSVIAHSHVTIFTVDP 654

Query: 453  DGRIKL------SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
              R+ +       N             +    +   +    +    + +  +    I   
Sbjct: 655  KRRVTMLEGALIWNNTHEENHDGTRWFVGENMY--KVFNRLTAQLADGERPEFLEPIELI 712

Query: 507  FDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--------------MLTFVNVTDSVRAE 552
             D  R +       + D       +P+   +T              +   ++VT+    E
Sbjct: 713  LDG-RVAEDVKEHGIDDRWYRTRFLPMFGKKTQESGAKNDTYIEGVIGVIMDVTELKSRE 771

Query: 553  RALTEKNE----------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +AL ++++          A ++A+ +K+ F+ ++S+E+R+P+T ++G  +LL       L
Sbjct: 772  QALEKQSKEKRKAIANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLA---GMHL 828

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +Q +YVE I +S+T LL ++NDILD + V++G + +      L+ ++ EV + +   +
Sbjct: 829  DEEQQEYVENIQSSATSLLTVINDILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAV 888

Query: 663  HENNIRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARD 715
               N+  +      +      + D  R+ QI + +L+N++ F+++G    S V  K   +
Sbjct: 889  ERKNLDFQSEIGDSIENDLVVIGDPGRVRQILTNLLTNSIKFTNQGYVRFSVVAEKETAE 948

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            + +  F+V+++G  I +++ K +F  F        RR  G GLGL+I ++ ++L  G +S
Sbjct: 949  SIEVRFTVEDSGIGIQDEVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIS 1008

Query: 774  ISSSDEGVTTINCRIP 789
            + S+    T     IP
Sbjct: 1009 LESNVGVGTRATFWIP 1024



 Score = 44.9 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 31/310 (10%)

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             G   +A   S    +   L     +L+N  + I    ++  + F N +  +L+E D  
Sbjct: 350 PMGPPSVASHSSTPSLLQKMLLMKDALLNNTQMPILAMWKDGSVTFPNSAARKLFEKDAP 409

Query: 345 FLATNPSNDELL-------EFLRSANKLPEQLNWKTWKENIFSVYK---SSETHKDTWHL 394
              +    D L        +F R  +     ++     E  FS  +     E  K     
Sbjct: 410 LDTSVNGFDLLQYWHLYTEDFSRRLDVTEYPISTLLKTETPFSGIRIGMYDEAGKKLVFD 469

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPD 453
             G+ +    T +   G +    ++TV  +  T+     + + + I D + + V     D
Sbjct: 470 MLGEAIRDDSTGDFLAGVV-TGRDVTVMTEEITQIKERDEERFKLICDTMPQLVWTATSD 528

Query: 454 GRIKLSNPAFRSLWKTEENR-----LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           G +   N  F +                  H  ++     R+ +  +  D +        
Sbjct: 529 GLVDFWNTRFYNYSGLTPENSLGKSWVNAFHPDDLVEAQRRWKHSLNTGDPYMTEYRC-- 586

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              +S  G         L     P  N +T               ++  K      A   
Sbjct: 587 ---QSRDGHWRWFLGRAL-----PQRNKETGKVERWFGTCTDVHESIQTK----MNAKRT 634

Query: 569 KNSFVQHVSY 578
           +   +  +++
Sbjct: 635 RQQLLSVIAH 644


>gi|289623553|ref|ZP_06456507.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649156|ref|ZP_06480499.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867856|gb|EGH02565.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 576

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/523 (22%), Positives = 208/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVNKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+  
Sbjct: 342 KDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLSVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VSFAQAGVIEGGWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|254784391|ref|YP_003071819.1| PAS domain containing histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686889|gb|ACR14153.1| PAS domain containing histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 1096

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 118/589 (20%), Positives = 233/589 (39%), Gaps = 34/589 (5%)

Query: 218 ANISYKKNTETEGIVFQKAI-GESRKLFKEEIKKRMISSSALE---KNFCETVSTLEHGN 273
           AN+ Y  +          A+ GE      +E + RM              E++   ++G 
Sbjct: 274 ANLIYPDDLPVFSQHNAYALAGEPFSPRPDEYQMRMRRQDGDYVWLHIKGESLEWYKNGK 333

Query: 274 -NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
                 ++  ++      I ++ S+E     + T    +L+++   + + D N      N
Sbjct: 334 PRLRAGVLENIDGLKRLQIQLEASQEELSARE-TFLASLLNSIPDLVTLKDPNGRYLLCN 392

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            +F E+  ++   +      D L   L  + +  +     + +      +       D  
Sbjct: 393 DAFREIVAVEHTEIIGKDDFDFLPMHLAESLRANDDKALASDQATTVREW-LVYASDDKP 451

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           HL       +          + +  ++T    +  + +   +      +   +G+ +   
Sbjct: 452 HLVETVKTRLFNAQIQGHCVLSLGRDITETHRILEELDKFHRFA----EFSGQGLVITTL 507

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           D RI  +NP F  L  + +     G  +R+        +  ++  D     +     +R 
Sbjct: 508 DARITYTNPMFTRLTGS-DTTPESGRSLRD--------FYPAETADFLDKDVFPITRQRG 558

Query: 513 SLQGTLELLSDS-----VLEYSIIPLPNAQTM----LTFVNVTDSVRAERALTEKNEALR 563
             +G L LL+        L      +    T     +   ++++  R E+ L +  E   
Sbjct: 559 VWRGELALLNAQGANTTTLHTIFTVMSEYDTPLFLGVIITDISEQKRIEQELEKAKEDAE 618

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A+  K+ F+ ++S+E+R+PL  IIG+  LL  +    L  +    +E+I ++   LL L
Sbjct: 619 FANRSKSMFLANMSHEIRTPLNAIIGYAQLL--THDTELRGETHNQIEHIYSAGNHLLGL 676

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA- 682
           +NDILDL+ +++G  +L  +T  L+  LN +   +  +     +R+    D    + V  
Sbjct: 677 INDILDLSKMESGKSRLTMTTFDLSVELNTLLGMMEHRAVTKGLRLNADLDLPSPALVTS 736

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DRQ+L QI   +L NA+ F+S+G  V L+           V + G  I  +  K +F  F
Sbjct: 737 DRQKLAQILINLLGNAIKFTSEGE-VSLQCRHQADRIRLVVSDTGEGISAEEQKYLFTPF 795

Query: 743 VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           V      +   G GLGL +V++F  L GG +++ S+    T +   +P 
Sbjct: 796 VQGVQGERVGSGTGLGLILVKNFTALLGGELTLESTAGRGTRVIVSLPL 844



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 93/285 (32%), Gaps = 28/285 (9%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--N 225
           + ++DG+     +     ++LS   +    L +S+  LV  +D  G  L  N ++++   
Sbjct: 341 LENIDGLKRLQIQLEASQEELSARETFLASLLNSIPDLVTLKDPNGRYLLCNDAFREIVA 400

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
            E   I+ +           E ++     + A ++        +   ++K + +  V   
Sbjct: 401 VEHTEIIGKDDFDFLPMHLAESLRANDDKALASDQATTVREWLVYASDDKPHLVETVKTR 460

Query: 286 FGEA--------GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
              A         +  D+++   + ++L   +         + I   +  + + N  F  
Sbjct: 461 LFNAQIQGHCVLSLGRDITETHRILEELDKFHRFAEFSGQGLVITTLDARITYTNPMFTR 520

Query: 338 LWEIDLAFLATNPSND----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           L   D    +     D    E  +FL   +  P       W+  +  +            
Sbjct: 521 LTGSDTTPESGRSLRDFYPAETADFL-DKDVFPITRQRGVWRGELALLNAQG-------- 571

Query: 394 LPNGQTLHVIVTSNPRGGTIW----MFENLTVQVDLETKYNTLVK 434
             N  TLH I T      T      +  +++ Q  +E +     +
Sbjct: 572 -ANTTTLHTIFTVMSEYDTPLFLGVIITDISEQKRIEQELEKAKE 615


>gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1101

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 133/824 (16%), Positives = 269/824 (32%), Gaps = 117/824 (14%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNET-- 58
           +  G+  + + +G+     F+      G I  + +   + +I L+R R ++    + T  
Sbjct: 179 VFCGVNNVALAQGLSGAPAFT------GVIEAVSMQETLELIRLLRPRGTIHAISDATLS 232

Query: 59  -YSFLSEICDQLSKY----HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL 113
             + +    +  ++        L+  N   + WD   +    +  L              
Sbjct: 233 GRADMLTFRELAARNVPAPSRELSLEN---LTWD---DLARRVAALPGT----------- 275

Query: 114 SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAF-LRILSLD 172
                      I L  A E      + F+               R + +  F L    L 
Sbjct: 276 ---------DAILLLSAYEDAAGAPRPFEESLAFIL--------RHADAPVFHLWEHGLG 318

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLD--FLVWHRDQAGDILWANISYKKNTETEG 230
              +     +   +         +++  +      V   D A   +     +        
Sbjct: 319 KGLAGGKVISHFEQGRIAAQLALRIMNGASPGDIPVIEGDAANRYI-----FDHQVLARF 373

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
            + +  +    ++        ++    L       V  L       + ++R+        
Sbjct: 374 GIAESQLPPGSRILNAPSSPWVVYRRELRVAAAALVVILALTLFLIFHVIRLRQ------ 427

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
                     V         +     V IA FD    +   N  F E+       +    
Sbjct: 428 ------ARTDVRHSEERYRILFDQSPVGIAHFDGEGGIIALNAKFQEIVGAPRHKVLGLN 481

Query: 351 SNDELLE--FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
              ++ +   LR+         ++         Y S    K T       +  +     P
Sbjct: 482 MLHDVRDPEMLRAVR-----TAFEGGIGRYEGSYTSVAGRKTTL-----VSCILKCIFAP 531

Query: 409 RGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEG----------VAVFGPDGR 455
            G  ++   M E+LT +   E           ET      G          +       R
Sbjct: 532 GGRHLYGLIMAEDLTERRRAEDTLREREMFLLETQRITRVGGWKAGTRSDRLVWTDEVNR 591

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           I    P ++      E+        R  +         +    DL   ++TS    + + 
Sbjct: 592 ILEVPPDYK--PGLAESISFYAPEYRPGVWQMLQTVARDGTPVDLECEVVTSLGARKWTH 649

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
              +  + +               + T  ++T+   AE  L         A + K+ F+ 
Sbjct: 650 LRAVGRVEEH---------GEQLILGTLQDITERKTAEIELLNAKLRAEAASKAKSEFLA 700

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I+G   L+ T++LG   ++Q+ Y +    S   L  L++D+LDL+ ++
Sbjct: 701 NMSHEIRTPLNGILGMLQLMHTTRLG---AEQADYADIAIQSGRRLARLLSDMLDLSRIE 757

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           +G + + +    L   + +V +       +  IR+ V  D     + + D  R+ Q+ + 
Sbjct: 758 SGKLDIRHVPFQLAAAVQQVVELFLPISLQAGIRLDVRMDPTTPETLLGDIVRVQQVLTN 817

Query: 694 ILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           +L N+  F+  G  + L   R           +F++ + G  IPED    +F  F   ++
Sbjct: 818 LLGNSFKFTRIGG-ITLAVHRLPPPHAPACRVLFTISDTGCGIPEDKLGELFEPFTQASN 876

Query: 748 --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             R   +G GLGLSI +  ++L GG ++I S +   TT    +P
Sbjct: 877 GMRRSHQGAGLGLSICKRLVHLMGGEITIESEEGAGTTACVSLP 920


>gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1199

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 163/374 (43%), Gaps = 14/374 (3%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +  +            I+ + + + +    GR  ++N     L+          T +   
Sbjct: 550 ERTSDLRNAEAQMRTLINLIPDIICLKDGKGRWLIANNFDLELFGLSGVAYQGKTDME-- 607

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A+ S +Y  +      +  +          +  +     S + + +I LP  +   +  
Sbjct: 608 LASFSPFYQNAFANCERSDELAWQAGGLNRYEEIIPRPDGSSITFDVIKLPVFEPDGSRK 667

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +    R   A     +AL+ A E K  F+ ++S+E+R+P+  +IG T LL+ S    LN
Sbjct: 668 ALVVVGRDITARKLTEQALQDATEAKMQFLANMSHEIRTPMNGVIGMTGLLQES---GLN 724

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q QYVE I AS  +LL+++NDILD + ++AG ++L  +   ++ +LNEV   ++T+  
Sbjct: 725 PEQQQYVEVIRASGDLLLSIINDILDFSKMEAGRLELEQTPFDVSMILNEVIDLVSTQAQ 784

Query: 664 ENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
              + ++   +  +      D  RL QI   +L NA+ F+  GS V L+A  + G     
Sbjct: 785 SKGLALERHLELAQPCYLKGDVTRLRQILLNLLVNAIKFTESGS-VTLQARVEPGQDRRS 843

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
             +  V++ G  I E   +++F+ F         +  G GLGL+I      L  G + + 
Sbjct: 844 MLLCQVRDTGIGISEQQLETLFDPFTQADASITRKYGGTGLGLAISRHLTQLMEGEIGVD 903

Query: 776 SSDEGVTTINCRIP 789
           S     TT    IP
Sbjct: 904 SHQGQGTTFRLSIP 917



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 53/161 (32%), Gaps = 15/161 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-- 353
            +   + +       +++ +   I + D        N   +EL+ +           +  
Sbjct: 550 ERTSDLRNAEAQMRTLINLIPDIICLKDGKGRWLIANNFDLELFGLSGVAYQGKTDMELA 609

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--TLHVIVTS--NPR 409
               F ++A    E+ +   W+    + Y+      +    P+G   T  VI      P 
Sbjct: 610 SFSPFYQNAFANCERSDELAWQAGGLNRYE------EIIPRPDGSSITFDVIKLPVFEPD 663

Query: 410 G---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           G     + +  ++T +   E       + + + + ++S  +
Sbjct: 664 GSRKALVVVGRDITARKLTEQALQDATEAKMQFLANMSHEI 704


>gi|332140190|ref|YP_004425928.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550212|gb|AEA96930.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 962

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 96/430 (22%), Positives = 174/430 (40%), Gaps = 28/430 (6%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           W+  + S+ K+ E     W +     + V+  +      I +  +++ Q  LE   +   
Sbjct: 75  WQGEVHSLRKTGEP----WFVF-ATVVPVVKKAPLVDHLIVIATDISQQKRLEKSLSEGR 129

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI------AATC 487
                  D + EGV     +G+ +  NPA   L       L        +          
Sbjct: 130 AFYRSITDSIGEGVYAVNAEGKTQFLNPAASRLLGWTLEELQDRRFHDTVHYQKGDGTLL 189

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTF 542
            R     +         TS++D     +G L  +S        +PL N +      +  F
Sbjct: 190 KREQCPVNLTIRDGKSYTSYEDFFTDKRGRLFPIS-----IVAVPLLNNEGKPDGHVGVF 244

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++     E  L +  +  + A++ K  F+  +S+E+R+P+  IIG T L   ++    
Sbjct: 245 NDISSQKAIEHKLQKAYDEAQSANKAKTDFLATMSHEIRTPMNAIIGLTHLALETQD--- 301

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N ++ QY+E +  SS  LL L+N ILD + V+A  + +      L   ++++ Q    K 
Sbjct: 302 NDQRQQYLEKVQKSSNALLELMNSILDFSKVEANKIDILDEPFTLTKTIDKLAQVFQVKA 361

Query: 663 HENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +  +++              D +++ Q+   +LSNA+ F+  G  V+LK  +   +  F
Sbjct: 362 QQKQLQLLFDIRCSTKIRCSGDSEKIYQVLLNLLSNAIKFTETGH-VLLKIDKRGNELGF 420

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV + G  I +     +FN F        R   G GLGL+I +  + L GG ++I S   
Sbjct: 421 SVSDTGMGISDTGKTKLFNAFEQADASISRKFGGTGLGLAICKRLVELMGGELTIESKVN 480

Query: 780 GVTTINCRIP 789
             T     +P
Sbjct: 481 EGTNFAFSLP 490



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 82/254 (32%), Gaps = 29/254 (11%)

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFC 263
            D  G IL AN   +K +E  G    + +G+    F            + S+ AL   + 
Sbjct: 20  MDVKGKILSAN---EKCSELSGFAEHEIVGKYITAFDITNISNSDISAIFSALALGNIWQ 76

Query: 264 ETVSTLEHGNNKSYK-------IVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEIL 312
             V +L       +        + +         IA D+S++  +   L+        I 
Sbjct: 77  GEVHSLRKTGEPWFVFATVVPVVKKAPLVDHLIVIATDISQQKRLEKSLSEGRAFYRSIT 136

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            ++   +   +     QF N +   L    L  L     +D +  + +    L ++    
Sbjct: 137 DSIGEGVYAVNAEGKTQFLNPAASRLLGWTLEELQDRRFHDTV-HYQKGDGTLLKREQCP 195

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDL 425
                     KS  +++D +    G+   + + + P         G + +F +++ Q  +
Sbjct: 196 V--NLTIRDGKSYTSYEDFFTDKRGRLFPISIVAVPLLNNEGKPDGHVGVFNDISSQKAI 253

Query: 426 ETKYNTLVKVQGET 439
           E K           
Sbjct: 254 EHKLQKAYDEAQSA 267


>gi|119488052|ref|ZP_01621496.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119455341|gb|EAW36480.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1106

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 156/417 (37%), Gaps = 42/417 (10%)

Query: 412 TIWMFENL-------------TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            +W  E++               + + E             +D+  E +        I L
Sbjct: 460 RVWTQEDINLVQRVGALIAIAQAKNEAERALRDSEARFAGILDNADEAIISIDETQHITL 519

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N     ++   +  +        +       +++       A +      ER ++ G  
Sbjct: 520 FNQGAEKIFGYSQAEVLGQALDILLPLRFVDAHHQHIQDFTQAPLSARKMSERNTVFGRR 579

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQH 575
               +  +E SI  L      +    V D     RAE  L     A   A   K+ F+ +
Sbjct: 580 RDGEEFPIEASISKLELGNKRIYTAFVRDITKRKRAEEELKRAKAAADSASRAKSEFLAN 639

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+PL  I+G+  +L+  K  ++  +Q + +  I    + LL L+NDILDL+ ++A
Sbjct: 640 MSHELRTPLNGILGYAQILQRDK--NITPQQRKGLGVIKQCGSHLLTLINDILDLSKIEA 697

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKI 694
             ++L+ +       L  V +    +  + NI     +   L  S  AD +R+ Q+   +
Sbjct: 698 QKLELHPTDFDFLTFLCGVSEICRVRAEQKNISFTYQTSQHLPKSLHADEKRVRQVLINL 757

Query: 695 LSNAMDFSSKGSTVILKAARDNG----------------------DFIFSVKNNGSSIPE 732
           +SNA+ F+  G  +      +NG                         F V++ G  IP 
Sbjct: 758 ISNAIKFTDTGCVIFTTELIENGMAKVCDVGHPDQCFTPPQCATHKIRFLVQDTGIGIPS 817

Query: 733 DMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  + +F  F        +  G GLGL+I +  +++ G  +++ S     +     +
Sbjct: 818 EQIEKIFIPFEQVGDRFRKAEGTGLGLAITQKIVSMMGSTLNVESVVGKGSKFWVDL 874



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 18/162 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E  + D       IL N   AI   D+ +++   N+   +++    A +     +  L
Sbjct: 485 EAERALRDSEARFAGILDNADEAIISIDETQHITLFNQGAEKIFGYSQAEVLGQALDILL 544

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT------SNPR 409
                 A+      + + + +   S  K SE +       +G+   +  +       N R
Sbjct: 545 PLRFVDAH----HQHIQDFTQAPLSARKMSERNTVFGRRRDGEEFPIEASISKLELGNKR 600

Query: 410 GGTIWMFENLTVQVDLETKYNT-------LVKVQGETIDHLS 444
             T ++  ++T +   E +            + + E + ++S
Sbjct: 601 IYTAFV-RDITKRKRAEEELKRAKAAADSASRAKSEFLANMS 641


>gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 1127

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 102/389 (26%), Positives = 162/389 (41%), Gaps = 31/389 (7%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E L  Q     K    +  Q   +D  S  VA+    G I   N  F  +          
Sbjct: 401 ERLKEQTSEAKKALQELAEQKFALDAHS-IVAITDVKGTITFVNEKFIEIS--------- 450

Query: 477 GTHIRNIAATCSRYYNES-DGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIP 532
           G     +     R  N    G + +  +  +    +        +  D     ++ +I+P
Sbjct: 451 GYPREELIGKNHRLLNSGLHGMEFWNNMYATVSSGKIWHDEVCNIAKDGHFYWVDTTIVP 510

Query: 533 LPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             N        +    ++TD   AE  L E NE   ++ + K+ F+  +S+E+R+P+  +
Sbjct: 511 FMNENNKPKSYVAIRTDITDKKAAELELIEANEIAEESVKAKSEFLATMSHEIRTPMNGV 570

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG   LL  +K   L+  Q +       S+  LL L+NDILD + ++A  M+L+     L
Sbjct: 571 IGMLGLLMNTK---LDETQRRQASLAEGSAKALLTLINDILDFSKLEAEKMELDNIDFNL 627

Query: 648 NDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            D L   + +IA K  E  I + +  SD K     AD  R+ QI   I+ NA+ F+SKG 
Sbjct: 628 RDELETFRDTIAIKAQEKGIEVILDTSDIKTDIINADLGRIRQILFNIVGNAVKFTSKGH 687

Query: 707 TVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            V++KA+     + N   I  + + G  IP D    +F  F        R   G GLGL+
Sbjct: 688 -VLIKASLTLVDKVNARLILKMSDTGIGIPNDKLDRLFESFSQVDASTTRKYGGTGLGLA 746

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           IV+   +L GG + + S     +T    I
Sbjct: 747 IVQKLCSLMGGKIDVKSDLGHGSTFTVDI 775



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 17/168 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVA---------IAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           E  + +Q +   + L  L            +AI D    + F N  F+E+       L  
Sbjct: 400 EERLKEQTSEAKKALQELAEQKFALDAHSIVAITDVKGTITFVNEKFIEISGYPREELIG 459

Query: 349 NPS---NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                 N  L       N      + K W + + ++ K        ++  +   +  +  
Sbjct: 460 KNHRLLNSGLHGMEFWNNMYATVSSGKIWHDEVCNIAKDGH-----FYWVDTTIVPFMNE 514

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           +N     + +  ++T +   E +     ++  E++   SE +A    +
Sbjct: 515 NNKPKSYVAIRTDITDKKAAELELIEANEIAEESVKAKSEFLATMSHE 562


>gi|224538905|ref|ZP_03679444.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519483|gb|EEF88588.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 652

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/504 (20%), Positives = 212/504 (42%), Gaps = 28/504 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + ++L     +L    +A+   + N       + + E   +D   +    + +E   F
Sbjct: 29  ELLKEKLLKVNSVLAAHQIALWEININTLECTFTQEYFESLGLDKVGIRYQ-NLEEFCSF 87

Query: 359 LRSANK-----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVIVTSNPRGGT 412
           +   +K        Q     + E+     +    H +   L +   ++    + NP    
Sbjct: 88  VHPDDKHLVSLEGFQKKLDGFDESNVLRVRCVGAHGEIVWLEDHLLSVEKDKSGNPERLL 147

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            +   N+T Q + E   + + +   + I  L E + +   D  I               +
Sbjct: 148 CYTV-NVTGQCEREAHISRVEERNRKIIQALPEFIFILDQDFFITDV---------LMSS 197

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLS--DSVLEY 528
                  +  +     R     +  DLF   I     D E K ++  L++        + 
Sbjct: 198 DTILLHPVEQLRGADGRTIYSPEVSDLFLRNIRQCLEDGELKEIEYPLDVDDCERHYFQA 257

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            I P  + + M    ++ D V+    L E  +   +AD +K+ F+ ++S+E+R+PL  I+
Sbjct: 258 RIAPFEDNKVMALIHDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIV 317

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF++++    L     ++++Y+  I  +S +LL L+NDILDL+ +++G  ++N+  + + 
Sbjct: 318 GFSEIIA---LTEDEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMT 374

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L++EV++    KM +  IR+ V+   +    + DR R+ Q+    LSNA+  + +G+ +
Sbjct: 375 GLIDEVEKVHRLKM-KTGIRLNVMRPDEEIWIMVDRNRITQVLFNFLSNAIKNTHEGA-I 432

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            L            V + G  I ++    +FNRF         +G GLGL I +S +   
Sbjct: 433 TLGLEVCGEWLKVYVTDTGCGIAKEKLPLIFNRFEKLNDF--VQGTGLGLPICQSIVERL 490

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG +S+ S     +T    +P ++
Sbjct: 491 GGKISVESEVGVGSTFVMTLPYRQ 514


>gi|94264236|ref|ZP_01288031.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93455347|gb|EAT05551.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 209/525 (39%), Gaps = 50/525 (9%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            ++   +        E++ N+   +  +  +  + F N     L+      L        
Sbjct: 283 TAQRERLRHSEAGYRELVENVNSIVLRWRADGTITFINEYGARLFGYTPRGLVGRSVVGS 342

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH---KDTWHLPNGQTLHVIVTSNPRGG 411
           ++    S+ +   ++     +      Y  +E     +D   L       V+  +     
Sbjct: 343 IVPENESSGRDLAKMMADVAQHP--EKYHDNENENICRDGSRLWISWNNRVVYDATGAVV 400

Query: 412 TIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            I     + T +  +E       +     + H+   V               +R L ++ 
Sbjct: 401 EILSIGRDHTRRRHIELALKNSERRFRTMVGHIYGAV---------------YRCLPESP 445

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEY 528
                    I +I    +R + E  G      II   + +R + + +  +      VLEY
Sbjct: 446 WAVEFVSEPIGDITGYPAREFME--GRRNLEEIIHPAERDRIAHEVSQAVAEGRPYVLEY 503

Query: 529 SIIPLPNAQTMLT------------------FVNVTDSVRAERALTEKNEALRKADEIKN 570
            II     +  +                     ++T+  R ER L E  +A + A++ K+
Sbjct: 504 RIINNERVERWVHERGQAVVDEDGVTWLDGVIFDITNRKREERELVEARDAAKAANQAKS 563

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+ELR+PL  IIG++++L            ++ ++ I  ++  LL L+N++LD 
Sbjct: 564 NFLANMSHELRTPLNAIIGYSEILLEEAEEHGLEGCAEDIQRIREAARHLLGLINEVLDF 623

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           +  ++G + L      L++L+  V   I   + E   R+ V ++ +LG+   D  RL QI
Sbjct: 624 SKTESGRISLTMEECDLDELMAAVVDIIRPLLPERENRLLVETEEELGTIRTDGTRLRQI 683

Query: 691 FSKILSNAMDFSSKGSTVILKAA---RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
              +LSNA  F+ KG  + L+     RD G+++   +++ G  I E+  K +F  F    
Sbjct: 684 LYNLLSNAAKFTEKG-FITLRTRRLMRDGGEWVEIDIQDTGIGISEEQQKKLFKPFTQAD 742

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               RR  G GLGL+I   F  + GG +++ S+    +T    +P
Sbjct: 743 SSISRRFGGTGLGLAISRYFCRMMGGDIALVSTPGQGSTFTVSLP 787


>gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1492

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/651 (17%), Positives = 234/651 (35%), Gaps = 43/651 (6%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
             AE   K  +L         L  S +  V   D+   I     +       +     + I
Sbjct: 699  NAEYQRKINELVQLNEDIDNLLRSTNVGVVFLDRNLYIRKFTPAAAAVVNLQAGDVDRPI 758

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN----KSYKIVRVLNS-FGEAGIA 292
                    E     +       ++  E              ++Y  ++      G     
Sbjct: 759  ANFTNRLVETSLDALAREVIAHESLIEKEVCNADTKESLLLRAYPYIKADGELDGVTLTF 818

Query: 293  IDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            ++V++   V  +L  +  +L  +     V  A+ D+N      N+   E+ ++ +     
Sbjct: 819  LEVTELKRVQAKLEESNAVLETVYATSPVGFALHDENLRFVRLNQMLAEIDQLSIEE-HI 877

Query: 349  NPSNDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              +  E+L  E    A  L  Q+         +    +  T  D +         V +  
Sbjct: 878  GRTMAEILPSEIGEQAMALHRQVLETGNPVLDYEFEGALPTEPDAYRHWLASYFPVDLK- 936

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRS 465
            N R     +   +T    ++T+            +     + ++  P       N +   
Sbjct: 937  NGRRWVAAVVNEITAIKKVQTELQDSRNFAQRLSESNPGIIYIYDIPSMSATYLNSSVSK 996

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD------ERKSLQGTLE 519
            +       +       +I        + S     +   I +  D      + K   G+  
Sbjct: 997  ILGYTPREVRDMG--DHIIQRLVHPKDFSKVIQYYQRFIHNHTDVLETELQIKHKNGSWR 1054

Query: 520  LLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEAL----------RKADEI 568
             ++   + + +       Q +    ++T     ER LT++ + L            A++ 
Sbjct: 1055 WIALRSVAFDVDSAGRVQQVLGLATDITGRKTTERRLTKQKQTLENAIAAAQAADSANQA 1114

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+E+R+P+  I+G + LL+ +    LN +Q   +E +  +   LL L+ND+L
Sbjct: 1115 KSEFLANMSHEIRTPMNLILGTSQLLERT---GLNERQQNLLEVLQRNGQTLLTLINDVL 1171

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
            DL+ ++A  + ++     L  LL     + A    E  + I +  D  L +  + D  RL
Sbjct: 1172 DLSKLEAQELHIDCKPFDLGTLLKTTFANFAPSAEEKGLSITLEVDSTLPTLVIGDSFRL 1231

Query: 688  LQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             QI   +L NA+ F++KGS       ++ A++     FSV + G  I  D  +++F  F+
Sbjct: 1232 QQILHNLLGNAVKFTAKGSIQLRSQRIQRAKNKVTVRFSVTDTGVGIHPDAQENLFEPFI 1291

Query: 744  SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               +    Q  G GLGL+I    + L  G + + S     +T    +P ++
Sbjct: 1292 QADNSSTRQYGGTGLGLTICRRIVELMRGEIGVESQPNQGSTFWFVVPLEK 1342


>gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 607

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 167/395 (42%), Gaps = 24/395 (6%)

Query: 402 VIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G +  MF  LT ++  +  + ++  +     I ++++G+     +G I   
Sbjct: 224 VEVRSDDEIGQLANMFNYLTARLKGVLQEVSSEKQKLDTIITYMADGIIAATKEGEILHV 283

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           NP    +   EE +L+P    RN       Y  E +   L          E ++ Q  L 
Sbjct: 284 NPKAMEMLNIEEGQLAP----RNFNEIFKPYDEEFEMDYLLE------MSENQTGQRMLY 333

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +    +LE S  P  N    L  +           L +   + +K + ++  FV +VS+E
Sbjct: 334 VEDGVILEASYAPFINENGALGGII---------LLLQDVTSAQKLENMRKEFVANVSHE 384

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++PLT I  +T+ L    L +     + +++ +   +  +  LV D+L L+ +D     
Sbjct: 385 LKTPLTTIKSYTETLLDGVLEN-TELATSFLQVVDGEAERMARLVRDLLQLSNLDYKKSN 443

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            N   + LN+++      I          I      +     AD+ R+ Q+   ILSN++
Sbjct: 444 WNKKEVNLNEIIENSILKIDVSAKNKAQEIITHLQDEPVHIYADKDRIEQVILNILSNSI 503

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            ++ +G  +I+    D G     +++ G  IP++    +F RF         +  G GLG
Sbjct: 504 KYTPEGGRIIVDLIVDEGVVTLKIRDTGIGIPKEDIARIFERFYRVDKARSREMGGTGLG 563

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LSI +  I  H G + I S +   T ++ ++P  E
Sbjct: 564 LSIAKQIIEAHEGTIEIFSEEGHGTEVHTKLPVTE 598


>gi|170077877|ref|YP_001734515.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885546|gb|ACA99259.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1208

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 163/376 (43%), Gaps = 18/376 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T +       +   +   + I ++   +A+          +  +   ++  E  L   +
Sbjct: 418 VTDRKLASQALDQERRQLRQLIQNMPVAMAMLDKKLCYVAHSHQWLVDYQLGEKTLVGRS 477

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           H R +       Y +     L   +IT  +D      G  + L  +V  +          
Sbjct: 478 H-REVFVNLQEDYQQHLQTALGGQVITCEEDCYVQHDGKKQYLKWTVQPWYHRENQVGGV 536

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++   N+ D       L E  EA   A  +K+SF+ ++S+E+R+P+  I+G  +LL+T++
Sbjct: 537 VIVTQNIND-------LVEGREAALAASRLKSSFLANMSHEIRTPMNGILGIAELLQTTQ 589

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN +Q  +++ +S S+  LL ++NDILD + ++AG M+L    + + D +  V + +
Sbjct: 590 ---LNPQQQDFIKTLSQSANHLLYVINDILDFSKLEAGEMRLESVPLQIIDCVESVAELL 646

Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +     + +    D +L G+   D  RL QI + ++ NA+ F+ +GS VI        
Sbjct: 647 AIQAQTKQVELITTIDPQLGGTVTGDSMRLRQILTNLVGNAIKFTHRGSVVIRALPMAED 706

Query: 718 D----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
           +      F V + G  I +     +F  F        R   G GLGL+I +  ++L  G 
Sbjct: 707 EASVLVKFEVIDTGIGIDKADQAKLFRSFSQVDPSTTREYGGTGLGLAIAKHLVSLMAGD 766

Query: 772 VSISSSDEGVTTINCR 787
           + + SS    +T    
Sbjct: 767 IGLESSPGQGSTFWFT 782


>gi|169827295|ref|YP_001697453.1| sensor protein [Lysinibacillus sphaericus C3-41]
 gi|168991783|gb|ACA39323.1| Sensor protein [Lysinibacillus sphaericus C3-41]
          Length = 561

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 165/417 (39%), Gaps = 30/417 (7%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKV 435
            I S  +            N +       ++  G     F  +  Q+    +  N   + 
Sbjct: 169 RITSPLRKMRELAFEIAKGNFEAKMPTTQNDEIGQLAVAFNQMGRQLKHNLEVINQENEQ 228

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++ V  F  D  I LSNP    L +            ++        Y+  D
Sbjct: 229 LSNILTSMTDAVITFNRDRTILLSNPPAERLMQKWFVNKGS----QSAKPIPPELYHMLD 284

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              +F             L+  +E +  +   ++I PL + + +          R   A+
Sbjct: 285 HVLMFED----------KLEEEIE-MDGNYYTFTISPLYSGEII----------RGAVAV 323

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                   + +++++ F+ +VS+ELR+P+  + G+++ L          ++++  + I  
Sbjct: 324 IRDMTEQHRLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDQEERNEITKIIYD 383

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
            S  +  LV D+LDLA +++G M L    + +N     + Q  A    E ++ +   S+ 
Sbjct: 384 ESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHVHLLFDSEF 443

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   D  R+ Q+ + ++ NA+  + +GS V +K  ++      SV++ G  IP+D 
Sbjct: 444 NDDAMINIDEDRIEQVLTNLVDNALRHTDEGS-VTVKVEKEPTFAKISVQDTGHGIPQDD 502

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF RF          + G GLGL+I  + +  H G++ + S  +  TT    +P
Sbjct: 503 LPYVFERFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 559



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 86/277 (31%), Gaps = 36/277 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEIDLAFLATNPSNDEL 355
             +N +      IL ++T A+  F+++R +   N     L   W ++    +  P   EL
Sbjct: 220 EVINQENEQLSNILTSMTDAVITFNRDRTILLSNPPAERLMQKWFVNKGSQSAKPIPPEL 279

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              L       ++L  +   +  +  +  S  +       +G+ +          G + +
Sbjct: 280 YHMLDHVLMFEDKLEEEIEMDGNYYTFTISPLY-------SGEIIR---------GAVAV 323

Query: 416 FENLTVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             ++T Q  LE   +         ++     +   SE +     D  I+           
Sbjct: 324 IRDMTEQHRLEKLRSDFIANVSHELRTPIAMLQGYSEALM---DDDFIQDQEERNEITKI 380

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             +     G  + ++             +     I ++F+   +      +       E 
Sbjct: 381 IYDESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAK-------EK 433

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            +  L +++     +   D  R E+ LT   +   + 
Sbjct: 434 HVHLLFDSEFNDDAMINIDEDRIEQVLTNLVDNALRH 470


>gi|218438990|ref|YP_002377319.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218171718|gb|ACK70451.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1516

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 127/693 (18%), Positives = 252/693 (36%), Gaps = 91/693 (13%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-----TEGI 231
            ++ E     + L +    +  L  +    ++  D  G+ ++ N  ++           G 
Sbjct: 832  DITEFKQAQEALQDSKRRYVTLAQASPVGIFRTDIQGNCIYVNQRWQAIAGLTWQKALGK 891

Query: 232  VFQKAIGESRK-LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS----- 285
             + +AI    +    E+ ++ + ++S  +  +         G         V  +     
Sbjct: 892  GWSQAIHPQDQNRVLEQWEQALETNSPFQAEYRFQRP---DGIVTWVYGQAVAETNDQGK 948

Query: 286  -FGEAGIAIDVS-------------------------------------------KEITV 301
              G  G   D+S                                            E  +
Sbjct: 949  LEGFLGTITDISDRKQAEVKLQKLNDELEQKVEVRTRHLQQANQHLRQEILERQQAEEAL 1008

Query: 302  NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            +        +  N  + IA  D        N +  +      + LA         EF   
Sbjct: 1009 HKSEAQLRSMFENAAIGIAFVDLEGKPFKSNPALEKFLGYRSSELAQ----MSFTEFTYP 1064

Query: 362  ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRGG---TIW 414
             + + + L +    +++F+  K+S   +  +   +GQ +     V +  N +G     I 
Sbjct: 1065 EDIMTDLLLY----QDLFTSNKNSYQMEKRYIRKDGQGVWGHLTVSLVRNTQGKPQFAIA 1120

Query: 415  MFENLTVQVDLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            M E+++     E +     +   E        ID +   + V    G+  L+N A    +
Sbjct: 1121 MVEDISDAKQSEIERILAQEALKENQIFLRNVIDTVPNLIFVKNRQGQYTLANQAMAMAY 1180

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             T    L   +              + D  ++  ++ +    E+     TL        +
Sbjct: 1181 GTTVEELEGKSDADFHIIPAEVTQVQIDEEEVMNSLESLLIPEQP---LTLANGEIRYFQ 1237

Query: 528  YSIIPL--PNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                PL  P+ +         ++T+  + ++ + +     ++ +++K  F+  VS+E R+
Sbjct: 1238 TIKTPLISPDGKAHYILGVATDITEHKQIQQKIEKALIKEKELNQLKTQFIDVVSHEFRT 1297

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PLT+I+G+ +LL+         K++ Y+  I  +   L +L+ D+L ++  ++G ++LN 
Sbjct: 1298 PLTSILGYAELLERHSDKLSEQKKNNYLHKIRIAGQRLSDLIEDVLCISRAESGKLQLNP 1357

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA---DRQRLLQIFSKILSNAM 699
              + L     ++ + I   + +N+  I         S      D + L  I S +LSNA+
Sbjct: 1358 HPLNLEVFCQDLIEEIQIGIGKNHEMIFTRQPDSFNSLNGILLDEKLLRHILSNLLSNAL 1417

Query: 700  DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             +SS GS V L     N   IF + + G  IP +    +F+ F   ++ G   G GLGL 
Sbjct: 1418 KYSSLGSRVELSLYYKNEQVIFEISDQGIGIPAEAHPKLFDSFYRASNVGNIPGTGLGLH 1477

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            IV  ++ LHGG +  SS     TT   +IP  E
Sbjct: 1478 IVYKYVTLHGGTIDFSSKISVGTTFRVKIPISE 1510



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/461 (11%), Positives = 141/461 (30%), Gaps = 39/461 (8%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            + G   ++ E+ L    L       + +  +    +   + +G I + N + +     + 
Sbjct: 587  MIGTIQDITESKLMEDHLKESEEKLRHIVTTTADGIIVMNHSGYIYFVNPAAESFFGLKA 646

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-GNNKSYKIVRVLNSFGEA 289
              F    G             +       K     V  +E   + +   ++ +       
Sbjct: 647  DEFS---GYEWNFSINHDSTELAIEHPNNKLLFLEVKIVETLWDGEPVYLISL------- 696

Query: 290  GIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
                D+++     + L        ++++NL   + ++  ++ +   N    EL EI L  
Sbjct: 697  ---RDITQRKQAEEALKVSEKRYRDLINNLHAGVIVYRADKSILLSNPKANELLEISLEQ 753

Query: 346  LATNPSNDELLEFLRSAN-KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVI 403
            +    + D    FLR    K+P +  +      + S     + +    H P  +T + ++
Sbjct: 754  MLGKTAIDPDWYFLREDGTKMPVE-EYPV--NIVISTRYPLKNYVVGVHRPRSKTIIWLL 810

Query: 404  VTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            + +             I  F ++T     +       +           G+      G  
Sbjct: 811  INAFGEFNSCKQLNQVIVTFVDITEFKQAQEALQDSKRRYVTLAQASPVGIFRTDIQGNC 870

Query: 457  KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
               N  ++++      +       + I         E     L        +   +   G
Sbjct: 871  IYVNQRWQAIAGLTWQKALGKGWSQAIHPQDQNRVLEQWEQALETNSPFQAEYRFQRPDG 930

Query: 517  TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             +  +    +  +         + T  +++D  +AE  L + N+ L +  E++   +Q  
Sbjct: 931  IVTWVYGQAVAETNDQGKLEGFLGTITDISDRKQAEVKLQKLNDELEQKVEVRTRHLQQA 990

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            +  LR          ++L+  +      K    +  +  ++
Sbjct: 991  NQHLRQ---------EILERQQAEEALHKSEAQLRSMFENA 1022



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 109/347 (31%), Gaps = 18/347 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            LRI ++    +EL E     K L      ++++  ++   V   D+ G+  +   + K 
Sbjct: 336 VLRIFAV-RAAAEL-ERQYNEKALRESEQFYRLILSNISDAVLITDEQGNFTYICPNIKH 393

Query: 225 NTETEGIVFQKAIGESRKLFKEEIK--KRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                    +       +LF + +    ++  S  +     E +  L + +     I ++
Sbjct: 394 IFGYSCQEIENMKS-IDQLFGQNLFKITQLEESGEIINIEREILDKLGNTHVILINIKQI 452

Query: 283 LNSFGEAGI-AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQ----FHNRSFV 336
                       D+++       L  +   L      IA     +  L     + +    
Sbjct: 453 YIKEKNFLFTCRDITERKQAEASLRDSQVRLAKAQQ-IAHLGNCDWNLITHEFYWSEETY 511

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW---KENIFSVYKSSETHKDTWH 393
            ++ ++   L    +     + L   ++      +K     +E+    Y+     +    
Sbjct: 512 RIFGLESQELHL--TEKTFFDCLHPNDREFVIQQFKQALSNRESYNINYRIIRPDQTIRI 569

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           + N   + +    NP    I   +++T    +E       +     +   ++G+ V    
Sbjct: 570 IQNQGNIILDSQGNPI-QMIGTIQDITESKLMEDHLKESEEKLRHIVTTTADGIIVMNHS 628

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           G I   NPA  S +  + +  S      +I    +    E     L 
Sbjct: 629 GYIYFVNPAAESFFGLKADEFSGYEWNFSINHDSTELAIEHPNNKLL 675



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 115/313 (36%), Gaps = 35/313 (11%)

Query: 164  AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
            A   +  +        E  L  + L  +    + + D++  L++ +++ G    AN +  
Sbjct: 1118 AIAMVEDISDAKQSEIERILAQEALKENQIFLRNVIDTVPNLIFVKNRQGQYTLANQAMA 1177

Query: 224  KNTETEGIVFQKAIGESRKLFKE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
                T     +        +        +I +  + +S       E   TL +G  + ++
Sbjct: 1178 MAYGTTVEELEGKSDADFHIIPAEVTQVQIDEEEVMNSLESLLIPEQPLTLANGEIRYFQ 1237

Query: 279  IVRVL--NSFGEA----GIAIDVSKEITVNDQLTHT---YEILHNLTVAIAIFDQNRYLQ 329
             ++    +  G+A    G+A D+++   +  ++       + L+ L          +++ 
Sbjct: 1238 TIKTPLISPDGKAHYILGVATDITEHKQIQQKIEKALIKEKELNQLKT--------QFID 1289

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
              +  F          L +     ELLE  R ++KL EQ       +   +  + S+  +
Sbjct: 1290 VVSHEFR-------TPLTSILGYAELLE--RHSDKLSEQKKNNYLHKIRIAGQRLSDLIE 1340

Query: 390  DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD--LETKYNTLVKVQGETIDHLSEGV 447
            D   +   ++  + +  +P    ++  ++L  ++   +   +  +   Q ++ + L+ G+
Sbjct: 1341 DVLCISRAESGKLQLNPHPLNLEVF-CQDLIEEIQIGIGKNHEMIFTRQPDSFNSLN-GI 1398

Query: 448  AVFGPDGRIKLSN 460
             +     R  LSN
Sbjct: 1399 LLDEKLLRHILSN 1411



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/351 (11%), Positives = 105/351 (29%), Gaps = 48/351 (13%)

Query: 129  KATEKLRKEG--QSFDLVAETQNDCA-----IKIEGRVSGSCAFLRILSLDG----IYSE 177
            +A  +   +G  + F       +D       ++           +R   L      +  E
Sbjct: 938  QAVAETNDQGKLEGFLGTITDISDRKQAEVKLQKLNDELEQKVEVRTRHLQQANQHLRQE 997

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
            + E     + L    +  + +F++    +   D  G    +N + +K          +  
Sbjct: 998  ILERQQAEEALHKSEAQLRSMFENAAIGIAFVDLEGKPFKSNPALEKFLGYRSSELAQMS 1057

Query: 238  GE----SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFGEAGI 291
                     +  + +  + + +S       E     + G      +    V N+ G+   
Sbjct: 1058 FTEFTYPEDIMTDLLLYQDLFTSNKNSYQMEKRYIRKDGQGVWGHLTVSLVRNTQGKPQF 1117

Query: 292  AI----DVS-----------KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            AI    D+S            +  + +       ++  +   I + ++       N++  
Sbjct: 1118 AIAMVEDISDAKQSEIERILAQEALKENQIFLRNVIDTVPNLIFVKNRQGQYTLANQAMA 1177

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLP 395
              +   +  L      D         + +P E    +  +E + +  +S    +    L 
Sbjct: 1178 MAYGTTVEELEGKSDAD--------FHIIPAEVTQVQIDEEEVMNSLESLLIPEQPLTLA 1229

Query: 396  NG--QTLHVIVTS--NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGET 439
            NG  +    I T   +P G     + +  ++T    ++ K    +  + E 
Sbjct: 1230 NGEIRYFQTIKTPLISPDGKAHYILGVATDITEHKQIQQKIEKALIKEKEL 1280


>gi|251800212|ref|YP_003014943.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247547838|gb|ACT04857.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 614

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 164/395 (41%), Gaps = 24/395 (6%)

Query: 400 LHVIVTSNPRGGTIWM-FENLTVQVDLETKYNTLV-KVQGETIDHLSEGVAVFGPDGRIK 457
           L V V  +   G +   F ++T+++      N    +     + ++S+GV     +G++ 
Sbjct: 230 LQVPVLGDDEIGRLSSAFNDMTIRLKEALSVNEEENEKLASILSNMSDGVIAADENGKVI 289

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           + N   + +          G  +  +     + Y E         I+       ++ +  
Sbjct: 290 VWNRRSQEMLDVRTCE---GCSLPELLGMPVQKYRELQNGREQTVILP------RNEEEA 340

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                + +L  +  P+      +T          E+          K ++ +  FV +VS
Sbjct: 341 DMDDEEGILRVTFTPIHRRDKGITGTIAVLQDVTEQE---------KLEQSRRQFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT I  + + L    L        ++V  I   +  ++ LV D+L L+ +D+  
Sbjct: 392 HELRTPLTTIKSYAEALNDGALDE-RELSERFVGVIRNETERMIRLVTDLLHLSRLDSNQ 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             L      ++++L+EV    + ++ + +I   +I D  L S   DR ++ Q+   ++SN
Sbjct: 451 APLRRRKTNIHEMLDEVTDRFSFQLRQKSILATIIVDRDLKSAWLDRDQIDQVLDNLISN 510

Query: 698 AMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           A+ ++ +G  + L A  +D      SVK+ G  IP+     +F+RF            G 
Sbjct: 511 AIKYTLEGGAIELSAHKQDAATIAISVKDTGIGIPKKDLSRIFDRFYRVDKARSRNMGGT 570

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI    +  HGG +S+ S     TT+   +P
Sbjct: 571 GLGLSIAREIVKAHGGTISLKSELNDGTTVTFTLP 605



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 22/186 (11%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH-TYE 310
           +   +A        +     G+++  ++    N      + I + + ++VN++       
Sbjct: 216 LTRQAAAVAEGKFDLQVPVLGDDEIGRLSSAFND-----MTIRLKEALSVNEEENEKLAS 270

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL N++  +   D+N  +   NR   E+ ++         S  ELL        +P Q  
Sbjct: 271 ILSNMSDGVIAADENGKVIVWNRRSQEMLDVRT---CEGCSLPELLG-------MPVQKY 320

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDL 425
            +       +V       +       G  L V  T   R      GTI + +++T Q  L
Sbjct: 321 RELQNGREQTVILPRNEEEADMDDEEG-ILRVTFTPIHRRDKGITGTIAVLQDVTEQEKL 379

Query: 426 ETKYNT 431
           E     
Sbjct: 380 EQSRRQ 385


>gi|217077839|ref|YP_002335557.1| sensor histidine kinase [Thermosipho africanus TCF52B]
 gi|217037694|gb|ACJ76216.1| sensor histidine kinase [Thermosipho africanus TCF52B]
          Length = 465

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 171/370 (46%), Gaps = 43/370 (11%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     K   + ++ ++EG+ V   +GRI+  N   + +       L    HI       
Sbjct: 134 QIKKSEKFMSDVLNSINEGIFVLNENGRIEFLNDFAKEI-------LDSAPHINEFLK-- 184

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                            ++ +DERK L         ++++         + ++TF NVT 
Sbjct: 185 -----------------SAINDERKILTKEFNNHYYTIVKVKFNFSNETKYVVTFNNVTY 227

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  E+        L++ D++K  FV ++S+ELR+PLT I  +T+ L   ++      Q 
Sbjct: 228 EIELEK--------LKQLDKMKTEFVANISHELRTPLTAIKAYTETLLNMEVD--RESQR 277

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +++E +   S  L +L+ND+LD   +++G M+L YS   L +L+ EV +++     +  +
Sbjct: 278 EFLETVYEQSERLESLLNDLLDFTLIESGTMELEYSEFDLCELIKEVVENLKQLAEKYKV 337

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVK 724
           +I V  +    S  AD++R+ Q    ++ N++ FS K      V +   +   +    ++
Sbjct: 338 KINVSCES--ISISADKRRIKQAIHNLVDNSIKFSDKSKEERYVNISVEKKEENLSIIIE 395

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  I ++  + +F +F            G GLGL+IV+  I LHGG ++++S+    T
Sbjct: 396 DNGIGISQEDKEKIFEKFYRGDRSLTYEVPGTGLGLTIVQEIIKLHGGKINVNSTLGEGT 455

Query: 783 TINCRIPSKE 792
           T    IP ++
Sbjct: 456 TFELVIPYRK 465


>gi|119962503|ref|YP_948930.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
 gi|119949362|gb|ABM08273.1| putative signal transduction histidine kinase [Arthrobacter
           aurescens TC1]
          Length = 1153

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 163/397 (41%), Gaps = 28/397 (7%)

Query: 412 TIWMFENLTVQVDLE---TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            + + EN+T+  +LE    +    ++  G  ++   + +    PDG I   NP    ++ 
Sbjct: 319 VLIVVENVTLTRELESKVAQRTAELEGLGAIVNSSGDAIIGETPDGVITSWNPGAERIFG 378

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              +          +          +      +  + +++ +R+   G +  +S      
Sbjct: 379 YPASEAIGRQGDFFVPQDLVENERRALESTAQSGHVQNYESQRQRGDGKVIPVS-----V 433

Query: 529 SIIPLPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++ P+     +        ++T+   AE+ L    EA  +A  +K+ F+  +S+E+R+PL
Sbjct: 434 TLSPVRGGSGIRGVATISRDITERKAAEKELLAAREAALEASRLKSEFLATMSHEIRTPL 493

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             +IG T L+  +    L+  Q QY + +  +  +LL L+NDILD + ++AG + L+ + 
Sbjct: 494 NAVIGLTSLMMDT---PLSEGQRQYAQGVKGAGEVLLTLINDILDFSKLEAGKVDLDINA 550

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
               +L+ EV   +       ++ +       + +  + D  R+ QI   + SNA+ F+ 
Sbjct: 551 FDPRELVEEVAGLVVEAAQGKDLELISYCHPDVPARLMGDAGRIRQILLNLSSNAVKFTP 610

Query: 704 KGST-VILKAARDNGD---------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
            G   V +     + +           F V++ G  I  +  + +F  F        RR 
Sbjct: 611 DGEVEVQVSVLAHDPNLAHDPNKASLRFEVRDTGIGISAENHQRLFESFAQADASTTRRY 670

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+I      + GG + + S     +     +
Sbjct: 671 GGTGLGLAISRRLTEVMGGKIGLDSEPGVGSRFWFDL 707



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 3/132 (2%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           SK      +L     I+++   AI     +  +   N     ++    +       +  +
Sbjct: 334 SKVAQRTAELEGLGAIVNSSGDAIIGETPDGVITSWNPGAERIFGYPASEAIGRQGDFFV 393

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            + L    +   +    T +      Y+S     D   +P   TL  +   +   G   +
Sbjct: 394 PQDLVENERRALE---STAQSGHVQNYESQRQRGDGKVIPVSVTLSPVRGGSGIRGVATI 450

Query: 416 FENLTVQVDLET 427
             ++T +   E 
Sbjct: 451 SRDITERKAAEK 462


>gi|302188804|ref|ZP_07265477.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 576

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/524 (22%), Positives = 210/524 (40%), Gaps = 63/524 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+  
Sbjct: 342 KDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +    +I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L    
Sbjct: 402 LLIVREQAALQHIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRL 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VPASQAGLIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +  G GLGL++V+    LHGG V+++S  +        +P ++
Sbjct: 522 RKFEGTGLGLAMVKQLAELHGGCVAVASVKDLGARFVVWLPIRQ 565


>gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1364

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/548 (18%), Positives = 199/548 (36%), Gaps = 77/548 (14%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  +  Q+     ++ + + AI     +  +   N +   ++             D  +
Sbjct: 342 REEVLRKQME-LAALVSHSSEAIVAETPDGRITLWNPAAEAMFGYTAE---EAIDQDLTM 397

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------R 409
                   +PE        ++  +   ++ +   T H  +G  +HV+ + +P        
Sbjct: 398 LLAPQPYAMPE-------IDHADAALAANASAAQTMHHRDGHQVHVLASKSPIIESEGTL 450

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK------------------VQGETIDHLSEGVAVFG 451
            G    F +++ +V    +   L                    +Q   + H    +    
Sbjct: 451 SGHSHFFRDISDRVRSHQRSIDLNASLEHQVAERTGELVKFSVLQRAILAHAGYAIIATD 510

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIIT- 505
             G + L NPA   +       +                  +R   +  G  +   +   
Sbjct: 511 SSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLEAI 570

Query: 506 -----------------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                            S D  R  +  TL  L D   +           +   V++ + 
Sbjct: 571 AALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVI-------GYLGVAVDLIEQ 623

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L      
Sbjct: 624 KLQEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---LPGAAQD 680

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  S+  LL ++NDILD + ++AG + L  +   LN L + + + + + +    + 
Sbjct: 681 MVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVE 740

Query: 669 IKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFS 722
           + V          + D  R+ Q+   ++ NA+ F+ +G  V+      +GD      +FS
Sbjct: 741 MIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFS 800

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG + + S    
Sbjct: 801 VRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGR 860

Query: 781 VTTINCRI 788
            +     I
Sbjct: 861 GSEFYFVI 868



 Score = 39.5 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 50/304 (16%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L+ +++         L       +      G I   N + +      G   ++AI +   
Sbjct: 340 LRREEVLRKQMELAALVSHSSEAIVAETPDGRITLWNPAAEAMF---GYTAEEAIDQDLT 396

Query: 243 LFKEE---IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GEAGI 291
           +           +  + A          T+ H +     ++   +          G +  
Sbjct: 397 MLLAPQPYAMPEIDHADAALAANASAAQTMHHRDGHQVHVLASKSPIIESEGTLSGHSHF 456

Query: 292 AIDVSKEITVNDQ---LTHTYE-------------------ILHNLTVAIAIFDQNRYLQ 329
             D+S  +  + +   L  + E                   IL +   AI   D + ++ 
Sbjct: 457 FRDISDRVRSHQRSIDLNASLEHQVAERTGELVKFSVLQRAILAHAGYAIIATDSSGFVT 516

Query: 330 FHNRSFVELWEIDLAFLATNPS------NDELLEFLRS-ANKLPEQLNWKTWKENIFSVY 382
             N +  ++   + A +            DEL E  R  A++    +          +  
Sbjct: 517 LFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLEAIAALTSL 576

Query: 383 KSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             S+T + T+   +G+ L V++T        +   G + +  +L  Q   E +    +  
Sbjct: 577 GRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLIEQKLQEKQLRLAMDA 636

Query: 436 QGET 439
               
Sbjct: 637 AKSA 640


>gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium
           sp. ORS278]
          Length = 610

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 170/388 (43%), Gaps = 24/388 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-----TEENR 473
           +T+    E +Y  L +       ++S+ ++    +G +   +PA  +L          + 
Sbjct: 196 VTLLSMEEERYRLLAR-------NMSDVISRHRRNGAVMFISPAVETLLGAPVAQLHGHG 248

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L    H+ +  A  +     + G +  +       D     +   + +    +E    PL
Sbjct: 249 LFERVHVADRPAYLTALSEAAGGSEASSVEFRLRRDAPGEGRAGQQSVDFIWVEMRCRPL 308

Query: 534 P---------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                     + + +    +VTD    E+AL     A  +AD  K  F+  +S+ELR+PL
Sbjct: 309 DRAGVTCAGTDQEVVAVMRDVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPL 368

Query: 585 TNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             IIGF+++L   ++  LN+ ++ +Y + I+ S   LL++VN ILD++ +++G  +L   
Sbjct: 369 NAIIGFSEMLMQEQVLVLNAARRREYAQLINDSGQHLLSVVNGILDMSKMESGHFELTPE 428

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
                  L      +A +  EN + +   +   L     D +   QI   ++SNA+ F+ 
Sbjct: 429 PFAPRTALFNCCNLLALRARENGVDLAADAPHDLPVITGDPRAFKQIVINLVSNAIKFTE 488

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           +G  V + A  D    +  + + G  I  D  K + + F         +  G GLGLSIV
Sbjct: 489 RGGRVTVSAGVDGARLLLRITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIV 548

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +S + LHGG +SI S  +  TT+   +P
Sbjct: 549 KSLVTLHGGEMSIESKLDEGTTVTIALP 576


>gi|149178788|ref|ZP_01857370.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
 gi|148842405|gb|EDL56786.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
          Length = 1780

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 119/652 (18%), Positives = 251/652 (38%), Gaps = 69/652 (10%)

Query: 185  CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK-- 242
              +L   ++    +  S    +   D AG+I+  N + ++   T G   Q+ IG++    
Sbjct: 1001 QDQLYEEVARKNAILSSAIDCIITTDAAGNIVDFNPAAER---TFGYTAQEVIGKTLCDL 1057

Query: 243  -LFKE------EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN----SFGEAGI 291
             L +E         ++ + +   +         + H +   + +   ++      G    
Sbjct: 1058 LLLEEYHERYHTALEQFLKTGESDLIGRHIELPVMHQDGSHFPVELAISVTHLEDGHPFF 1117

Query: 292  AI---DVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             +   D+S    +E  + D    +  ++      +     +      + ++ E       
Sbjct: 1118 TLCLRDISLRKQQEEALRDSEGRSKALVEASAHMVWTMTPDARTVEDSPTWREFTG---- 1173

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHV 402
                   +   ++ +   ++     NW+T        ++S       + L N  G+    
Sbjct: 1174 QTYEEWKDKGWIDGIHPDDREQTLRNWQT-------AFESVTPLDCEYRLCNREGEWCWT 1226

Query: 403  IVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
             V + P+          + M  ++T Q  L+ +     K     +         + P   
Sbjct: 1227 SVRAVPQINSEGTVLRWVGMNLDITRQKHLQQEVEANEKRLFMALKAAGMAAWEWQPHAS 1286

Query: 456  IKLSNPAFRSL-----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFD 508
               SN  +  L            L    +  ++      +     G   +  I  I   D
Sbjct: 1287 F-WSNELYELLGIPNTTSASPETLFSCVYKEDLPGLIKAWDEAVQGEKEYDQIFRIVRPD 1345

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             E + L G  E++ D     +       Q      + T     E AL    +  ++A+  
Sbjct: 1346 GEIRWLAGVGEIVRDPQGNVT-------QIFGLNWDFTQEREGEEALRRSEKQAKQANVA 1398

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K++F+ ++S+E+R+P+T ++G+TDLL   +      ++++Y++ I  +   LL ++NDIL
Sbjct: 1399 KSAFLANMSHEIRTPMTAVLGYTDLLIGMEQ---EQEKAEYLQNIKRNGNFLLEIINDIL 1455

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
            DL+ ++AG ++++  +  LN++L +++  +  +  E N+   +     L      D +RL
Sbjct: 1456 DLSKIEAGKLEISQESFSLNEMLADLQSMMRVRAEEKNLEFGIEFISDLPERIETDPKRL 1515

Query: 688  LQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVS 744
             QI   ++SNA+ F+  GS  V++   R+  D +  F V + G  I       +F  F  
Sbjct: 1516 RQILLNLISNAIKFTETGSVKVVINFLREKADAVLKFDVIDTGIGITPKQQSRLFQSFSQ 1575

Query: 745  NAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IPSKE 792
                      G GLGL+I +    +  G++S+SS     +T +C   +P +E
Sbjct: 1576 GDASVTRNYGGTGLGLAISQRLAGMLNGNISVSSKPGEGSTFSCTINLPVRE 1627


>gi|126662135|ref|ZP_01733134.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38]
 gi|126625514|gb|EAZ96203.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38]
          Length = 1562

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 248/632 (39%), Gaps = 51/632 (8%)

Query: 193  SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-------GIVFQKAIGESRKLF- 244
             + K L  ++   +   D+   IL+AN  +              G+  +  +  ++KLF 
Sbjct: 681  ELQKTLLSNIQSGIVFEDENNIILFANQLFCDLFTISASPESLIGLDCEDCMMNAKKLFV 740

Query: 245  -KEEIKKRMISSSALEKNFCETVSTLEHG---NNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
              EE  +R+      ++     +  + +G         +       G      D++  + 
Sbjct: 741  ESEEFTERIFDILNKKEIVVNEIIEMNNGIFLERDYVPLFINNKYKGHLWKYTDITNRVK 800

Query: 301  VNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                L  + E    I  +   AI   D +  + F N+   E++      +      D ++
Sbjct: 801  SQLLLEQSEERNRLITESALNAIINIDSSGNIIFWNKQAEEIFGWKSEEVIGKKLQDNII 860

Query: 357  EFL-RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--TLHVIVTSNPRGGTI 413
                R+ +    +   +  +    +        K      +G    L + +    +G  +
Sbjct: 861  PIQHRAGHADGLKRYIECGEGPALNKLLELPAVK-----KDGTEVLLEMAIIPIKQGDEL 915

Query: 414  WM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            +     ++++ +   E +     K     I +++ G+     +  I+ +N +F ++   +
Sbjct: 916  FFCSFIQDISERKKAENQLKFQEKKYRNIIANMNLGMIEVDNNDLIQFANQSFCNISGFD 975

Query: 471  ENRLSPGTHIRNIAATCSRYYNESD-------GWDLFAAIITSFDDERKSLQGTLELLSD 523
             + L             ++   +S          DL+   + +   E +    +     D
Sbjct: 976  RDELIGKNPTSIFVDDENKKIIDSKKELRSQGNSDLYQIPVINKKGESRWWAISGAPNYD 1035

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
               +          T+   +++TD    E  L ++ +    A + K  F+  +S+E+R+P
Sbjct: 1036 ENGQLI-------GTIGIHLDITDQKLLEIELEKEKQRAINASKAKEVFLSTMSHEIRTP 1088

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  IIGF   L+     + + +Q  Y+E  + +S+ LL+++ND+LD++ +++G M+L  +
Sbjct: 1089 LNAIIGF---LRELSKHTTSQEQKIYLENSTIASSHLLSIINDVLDISKIESGEMELESN 1145

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
               L   + +V   +  K  E  + +K   +  + +  + D  R+ QI   ++ N++ F+
Sbjct: 1146 NFDLKHSVEKVVTILEVKAKEKGLELKSNFNSGISNLLLGDSFRIEQILYNLIGNSLKFT 1205

Query: 703  SKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGL 756
             +GS  +    ++   +  + + S+ + G  I E   +++F +F         +  G GL
Sbjct: 1206 IEGSIYVQCDLIQDFEEEQELLISISDTGIGIEESYLETIFTKFSQEEKDTSRKFGGTGL 1265

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G++I +  ++L  G+++I S     T I   +
Sbjct: 1266 GMAITKELVDLMRGNITIESKKNTGTKITVFL 1297



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 11/163 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           M  N+  +  +E+      ++Q   + ++  G+     +  I  +N  F  L+    +  
Sbjct: 662 MISNVDQRHKVESDLKYKNELQKTLLSNIQSGIVFEDENNIILFANQLFCDLFTISASPE 721

Query: 475 S-PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           S  G    +      + + ES+  +    I    + +   +   +E+ +   LE   +PL
Sbjct: 722 SLIGLDCEDCMMNAKKLFVESE--EFTERIFDILNKKEIVVNEIIEMNNGIFLERDYVPL 779

Query: 534 --PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
              N      +     + R +  L      L +  E +N  + 
Sbjct: 780 FINNKYKGHLWKYTDITNRVKSQL------LLEQSEERNRLIT 816


>gi|298376398|ref|ZP_06986353.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266276|gb|EFI07934.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 524

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/529 (20%), Positives = 214/529 (40%), Gaps = 63/529 (11%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-----LATNPSNDE-LLE 357
           +      +   L V I ++D+   L   NR+   L+ I         L  NP+  E  + 
Sbjct: 11  EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGINLFENPNFPEDKIA 70

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNPRGGTIWMF 416
            L+    +    N++ +     + Y + +  K+  +L  + + + +   +    G + MF
Sbjct: 71  RLKQGEMVVFDCNYE-FDNIQTNEYYNIDPKKEGINLRLSIKCVPLKGEAEDICGYVLMF 129

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            + T +     K   L       +      +  +                   + +++  
Sbjct: 130 TDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYD-----------------VKTDKMHI 172

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII--PLP 534
              +R +        +       F  I+   D ER  +QG  +++   + EYSI    L 
Sbjct: 173 DLDLRVLGNKSRLRASNLTTKKDFCEIVYPEDRERVLVQGFEKIVMGEIGEYSIQYRQLF 232

Query: 535 NAQTMLTF---------------------VNVTDSVRAERALTEKNE----------ALR 563
             Q +                        +++TD +  +  L                 +
Sbjct: 233 EGQYVWVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAK 292

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K+ F+ ++S+E+R+PL  I+GF ++L  +K      ++  YV+ I  +S +LL L
Sbjct: 293 EANRLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEE-EEREFYVDIIDKNSELLLQL 351

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + DILD + ++AG   +        ++  E     A K+   N+R       +  +  +D
Sbjct: 352 IEDILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQPVTVFSD 410

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +R++Q+ S  L+NA+ F+S+G  + L       +   SV + G  I E+ C+++F+RFV
Sbjct: 411 PKRVVQVISNFLTNAIKFTSEGE-IKLAYKVSKDEIRVSVSDTGMGISEEDCRTIFDRFV 469

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                  ++G GLGL+I ++ I   GG + + S+    +T    +P KE
Sbjct: 470 KL--NACKQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 516


>gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1265

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 123/694 (17%), Positives = 264/694 (38%), Gaps = 85/694 (12%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            ++ +  +  ++ E     + L +    ++ L ++ +  +W  +    I   N +     E
Sbjct: 435  VIDVTCLGVDVTERRRAEQALRDSEERYRRLVETANEGIWSINAEHVITLVNHA---MAE 491

Query: 228  TEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
              G   ++ IG   + F      ++  ++M +  A   +  E     + G+     +   
Sbjct: 492  MLGYEVKEIIGHKVEDFIFPEEFDQHTEKMQARHAGASDIYERRLIRKDGSILWTIVSAK 551

Query: 283  LNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRYLQFHNRS 334
              +       G   +  D+++   + ++L      L +L   +     +   +L F    
Sbjct: 552  ALTDDDGNFTGAFAMFTDITERKHMEEKLRANESRLISLVEVLQHPFTEPQEFLDFALHE 611

Query: 335  FVELWE--IDLAFLATNPSNDELL-----EFLRSANKLPEQLNWK-----TWKENIFSV- 381
             + L E  +   +L    +    L     + +     +    ++       W E +    
Sbjct: 612  AIRLTESKLGYIYLYDEKTERLTLNSWSRDVMHECTIVKPHTHYDLKGTGVWGEAVRQRS 671

Query: 382  ------YKSSETHKDTWH--------------LPNGQTLHVIVTSNPRG-------GTIW 414
                  +++    K  +                  G+ + V+  +N  G         + 
Sbjct: 672  PIVINDFQAYHPLKKGYPDGHAKLYSYMTIPVFREGKIVSVVGVANKEGEYTDTDVYQLS 731

Query: 415  MFEN----LTVQVDLETKYNTLVKVQGETIDHLSEGVAV---FGPDGRIKLSNPAFRSLW 467
            +  +    +  + + E+  +          D+L +G+      G DG I+     F  L 
Sbjct: 732  LLMDAVWKVLDREEAESALHEREAQLASLSDNLPQGMVYQLDSGSDGTIRH----FTYLS 787

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLEL-LSDS 524
                     G     + A  +  YN+   +   + A         + +    + + +   
Sbjct: 788  AGVMK--LHGVSPEQVLADANILYNQIIEEDRAVLAERENQAIQSKSTFSAEVRMKMPSG 845

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             + + ++     +T+               L +  EA   A+  K+ F+ ++S+E+R+PL
Sbjct: 846  EIRWHLLTSAPRRTLNAHTIWDGVEIDIDDLMKSKEAAENANRAKSEFLANMSHEIRTPL 905

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              ++G   LL+T+ LG   +++ +YV+    +S  L NL++DILDL+ ++AG + +    
Sbjct: 906  NGVLGMLQLLETAPLG---AEEKEYVDEAITASKRLTNLLSDILDLSRIEAGKLNIRIDE 962

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
              L D+ + V   +A    + ++ ++   D +L SFV  D  RL QI   ++ NA+ FS 
Sbjct: 963  FSLADMFDSVDGLLAATARKKDLELRFFLDEQLPSFVLGDEVRLRQILFNLVGNAIKFSD 1022

Query: 704  KGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
            +G T+ ++      A       +F V + G  I +++   +F  F        RR  G G
Sbjct: 1023 QG-TISVQAYLLPFAKIAQERILFMVSDEGIGISDELLGLIFEPFSQGEGNYTRRFQGAG 1081

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LGLSIV+  + L  G ++I S+    TT+   +P
Sbjct: 1082 LGLSIVKRLVGLLEGEIAIESAPGLGTTVYLSLP 1115



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 62/468 (13%), Positives = 145/468 (30%), Gaps = 48/468 (10%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIV----F 233
           A    +  K       ++ L+ S+   +   +   G I+  N + ++             
Sbjct: 190 ASREEEKIKTLESEEKYRALYASVMDPILVAETDTGIIVECNPAAEELFHRSRKELLGMH 249

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY----KIVRVLNSFGEA 289
           Q  +  + ++       +     A      E   +   G+ ++      +  +       
Sbjct: 250 QSDLHPAGEVVPHTKTPQFCRQVASPDQVQEVRFSRSDGDIRTALVRASVFHLQGRALIL 309

Query: 290 GIAIDVSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           G+  D+++     + L  + +     +L+   + I++ D    + F N+ F++L      
Sbjct: 310 GVFHDITERKAFEEALIKSEQKWRHVLLNTPQIGISL-DVKAKVLFANQYFLDLTGWHED 368

Query: 345 FLATNPSND-----ELLEFLR---SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            +      D     E+ E +R    A    + ++  +  EN   + ++ E    +W   N
Sbjct: 369 EILGQDWFDLFIPTEVREQVRSVFDAVMSQQHIHGFSTYENEI-MTRAGEKRVVSW--AN 425

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
             TL              +  ++T +   E       +     ++  +EG+     +  I
Sbjct: 426 ALTLDHKGYVID---VTCLGVDVTERRRAEQALRDSEERYRRLVETANEGIWSINAEHVI 482

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N A   +          G  ++ I       +   + +D     + +       +  
Sbjct: 483 TLVNHAMAEML---------GYEVKEIIGHKVEDFIFPEEFDQHTEKMQARHAGASDIYE 533

Query: 517 TLELLSDSVLEYSII---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
              +  D  + ++I+    L +     T      +   ER      E LR  +    S V
Sbjct: 534 RRLIRKDGSILWTIVSAKALTDDDGNFTGAFAMFTDITER--KHMEEKLRANESRLISLV 591

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           + + +    P T    F D      +  L   +  Y+      +  L 
Sbjct: 592 EVLQH----PFTEPQEFLDFALHEAI-RLTESKLGYIYLYDEKTERLT 634


>gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1626

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 135/849 (15%), Positives = 292/849 (34%), Gaps = 109/849 (12%)

Query: 23   KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL 82
             + +F      LL   +  +  +                   + +Q  +   L    + +
Sbjct: 311  SLVLFSGCLFSLLLAALIAMWSL-----------SLQRKQQVLAEQARRASMLEHSLDGI 359

Query: 83   T--------IVWDGKDET------PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK-- 126
                       W+   E       PE +G     + +P   + +L  +         K  
Sbjct: 360  ISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELIVP--PSIVLEEQALFAEVLAGKTV 417

Query: 127  LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI--------LSLDGIYSEL 178
            L++ +   R +G   +L   T         G + G    +R           +  + + L
Sbjct: 418  LNRVSRHQRADGS--NLSTSTTALPIYDEHGDIVGLSQTIRDITAQQDAERHILNLNASL 475

Query: 179  AE-TTLKCKKLSNHISVFKVLFDSLDFLVW--HRDQAGDILWANISYKKNTETEGIVFQK 235
                  +   L   +   + L D+++  +     D  G IL  N  +       G   ++
Sbjct: 476  ERQVAKRTHALQQALLENQALLDTINQQLHYSVTDLDGVILDVNEHF---CLISGYAREE 532

Query: 236  AIGESRKLFKEEIKKRMI-----SSSALEKNFCETVSTLEHGNN-KSYKIV--RVLNSFG 287
             +G++  + K                   K++   +         K +  V   V +  G
Sbjct: 533  LVGKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGEICNRGKDQQLKWFDTVIGSVFDEHG 592

Query: 288  EA----GIAIDVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVEL 338
            +      +  D+++      +      +L N+  A     I   D    +   NR    +
Sbjct: 593  QVERFVALQTDITERKLAQIEKNRIATLLTNVLDAASEMTIIAADPQGIITIFNRGAERM 652

Query: 339  WEIDLAFLATN--PSNDELLEFLRSANKLPEQLNWKTWKENIFSVY------KSSETHKD 390
                   +     P+   + + + +  +  E       K   F  +      + SET   
Sbjct: 653  LWYSAEEIIGKTTPAPFHIADEIAA--RAAELSVEYGQKIQGFDTFVHKAREEGSETRTW 710

Query: 391  TWHLPNGQ----TLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            T+   +G     +L V       G   G + +  +++  V  +    T      +  +  
Sbjct: 711  TYVRKDGSQLPISLSVTAMRGNDGEILGYLGIGVDISQIVAQQEALLTASNHLSKAAEVA 770

Query: 444  SEGVAVFGPDGRIKLSNPAFRSLWKTEE---------NRLSPGTHIRNIAATCSRYYNES 494
              G+  +         N    +++   E                H  ++           
Sbjct: 771  KLGIWTWNLLDNSLQWNDRMFAMYDQPESLKQQGLSYEHWRMRVHPDDVIEAEETLKRAV 830

Query: 495  DGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            +  + +  I  I + D E + +Q   ++  D             + +   +++T   + E
Sbjct: 831  EHDEPYEPIFRILTTDGEVRYVQAAAKIERDRQGHVI-------RVIGINIDITAQRQLE 883

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            + L    +    A+  K++F+ ++S+E+R+P+  ++G   L++ +   +L+ +Q  YV  
Sbjct: 884  KTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYT---ALSVQQQGYVTK 940

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               ++  LL L+NDILD + +DAG +KL+     +  L+ ++   ++     +++ +   
Sbjct: 941  AQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFD 1000

Query: 673  SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727
             D  L    +AD+ RL QI   +  NA+ F+  G  ++    L+   ++    FS+ ++G
Sbjct: 1001 LDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSG 1060

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              I E+  + +F  F        RR  G GLGL+I +  + L GG + ++S     +   
Sbjct: 1061 IGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFW 1120

Query: 786  C--RIPSKE 792
                 P  E
Sbjct: 1121 FDLTFPVME 1129


>gi|254445464|ref|ZP_05058940.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198259772|gb|EDY84080.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1321

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/412 (21%), Positives = 164/412 (39%), Gaps = 25/412 (6%)

Query: 397  GQTLHVIVTSNPRGGTIWMFENL----TVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFG 451
            G  + +++ +   G    +  N     T  +  + ++  L+++Q  + ++  S+ +    
Sbjct: 772  GLIVLLVLAAVAGGSWTILLRNRVASQTEVIREKMEHEALLEIQHRQLVNSASDFIFTID 831

Query: 452  PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
              GR    N A   L             I  I         ++      +    S + + 
Sbjct: 832  FQGRFLSYNKAGEDLTGYSSEDFKA-IDIYTIMDERHCLLVKNLLRRRRSIPNISLEMQI 890

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADE 567
            +   GTL       +E S   + N            ++    + E+ LT   EA  +   
Sbjct: 891  RRKDGTL-----RWVEVSAGFIRNESEAVSAFGVIHDIEVRKKTEQNLTRAKEAAEENTR 945

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K++F+  +S+ELR+P+  IIG T          L      + E I  S+  LL L+NDI
Sbjct: 946  AKSAFLATMSHELRTPMNGIIGMTG---LLLELELTRDARNFGETIRDSAASLLVLLNDI 1002

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
            LDL+  +AG +  +     L D +N+    + T  +  N+ +      KL  S + D  R
Sbjct: 1003 LDLSKAEAGKLTFDPHPFNLRDAVNQTVTLLETTANSKNLELLSEIPEKLPDSLLGDAGR 1062

Query: 687  LLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF 742
            L Q+   ++ NA+ F+  G   V +    D+ +   + F + + G  I E     +F  F
Sbjct: 1063 LRQVLLNLIGNAIKFTESGHVKVSVSKISDDNEKEIYRFQIMDTGIGISEKAKPKLFQSF 1122

Query: 743  VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                +    +  G GLGL I +  + L GG + + S++   +T    +P K+
Sbjct: 1123 EQADNSLARRFGGTGLGLKISKEIVTLMGGEIGMESTEGEGSTFWFTLPLKK 1174


>gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 600

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 172/398 (43%), Gaps = 30/398 (7%)

Query: 397 GQTLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDG 454
           GQ + V   S+   G +   F  ++ ++       +  K + ETI +++++GV  F  +G
Sbjct: 226 GQVMEV--KSDDEIGKLTKAFNFMSRELRKTLNQISREKSKIETILNYMTDGVIAFNING 283

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            +   NP  +++   E+         +      S    E    +++ A   S +   K +
Sbjct: 284 EVIHINPVAKAILGIEKCDFDFNEFSKRYNLDVS--IEEVKYLEIYNAKEVSTNIGEKYV 341

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           +    L +D           NA  ++             A+       +K + ++  FV 
Sbjct: 342 KIYFALFTDE--------ENNADGVI-------------AVLHDITEQQKLENMRKEFVA 380

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+ELR+PLT+I  + + L    L        +++  I++ +  +  LV D+L L+ +D
Sbjct: 381 NVSHELRTPLTSIKSYAETLLDGALED-RELAGKFLSVINSEADRMTRLVKDLLQLSRLD 439

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
              MK +   I   DL+    + +  +  E N  ++  + G+    VAD+ R+ Q+   I
Sbjct: 440 NNQMKWDMQKISFEDLVRNCVEKVKFESEEKNQTLECFTIGEELEIVADKDRMEQVVLNI 499

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
           L+NA+ ++ +G  + +   R   +    V ++G  IP +    +F RF         +  
Sbjct: 500 LTNAIKYTPEGGKITVYIGRMYSEVYVKVVDSGIGIPREDLGRIFERFYRTDKARSREMG 559

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           G GLGL+I +  +  H G +S++S     T +  ++P+
Sbjct: 560 GTGLGLAIAKEIVEAHKGSISVASEPGKGTEVTVKLPA 597


>gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1319

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 144/885 (16%), Positives = 292/885 (32%), Gaps = 121/885 (13%)

Query: 1   MMAGMATIGIGKGIEICTLFSCK--IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNET 58
           + A + T  I   +   T+ + +  +     I   +L T++   +  R R    ++  E 
Sbjct: 72  VSALVTTYFILPPLHSLTIAAGQDLVQWGILITNGILITLLSAAMH-RSRAREVQRWQEL 130

Query: 59  YSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQ-LHQRIDIPQTDTDLLSFEN 117
            S  S +    +++ +   E   + I     D     + Q L   +     +   +SF+ 
Sbjct: 131 MSTQSRLQRSETRFQA-TFEQAAVGIALVAPDGNWLRVNQRLCDMVGYQADELMGMSFQQ 189

Query: 118 WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG---SCAFLR------- 167
                          ++    +       T     ++  G V     + A +R       
Sbjct: 190 ITHPDDLFIDQTFVAQMLAGERP----HYTLEKRYLRKNGEVLWITLTVALVRDDRGKPD 245

Query: 168 ----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
               I+  +    E      + + + +       + +      W    A +  + +    
Sbjct: 246 YFISIIEDNQQRKETEAALRRNEVILHESQHLAKIGN------WRWHIANNSHFWSPEIY 299

Query: 224 KNTETEGIVFQKAIGESRKLFKEE---IKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +    +  +      E +K F +E      + +          E  + + H       ++
Sbjct: 300 RIYGRDPGLPPAVYPEVKKYFTQEGWRAIAQSVERCLQNGQPYECDAEVIHEQGDPVWVI 359

Query: 281 RVLNSFGEAGIAI--------DVSKEITVNDQLTHTYEI------------LHNLTVAI- 319
               +  ++  AI        D+++      QL H  ++            L+ +  AI 
Sbjct: 360 ARGAALRDSSGAIVELYGTVQDITERKLAEQQLLHNQQVALDTQRRARLAALNLMDDAIS 419

Query: 320 ----------AIFDQNRYL--------------------QFHNRSFVELWEIDLAFLATN 349
                     A+ D  + L                     F +     L+   +  L   
Sbjct: 420 ARIRAETTSTALRDSEQRLLMAQEGAHVGIWEWDILSGRLFFSPECARLYGRSVEQLCEF 479

Query: 350 PSNDELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                 L   +  R    L E  +  T  +  F + + +   +  W +  G         
Sbjct: 480 HIWQGCLHPDDRARIDQLLSELPHTGTPLDIEFRILRPTGEVR--WLVSKGSVYR-DAQQ 536

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            P    + +  ++T +   E +   L       +    +GV +    GRI+  N AF + 
Sbjct: 537 RP-VRLLGINLDITERKQAEQQLRQL----SLALKQSPDGVFITDIQGRIEYVNVAFLAA 591

Query: 467 WKTEENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
              +++ +   T   +R+     + Y    D           F + RK       L + S
Sbjct: 592 SGYQQHEVIGQTPTLLRSGLTPKATYITLWDAIHQGQRWHGEFINRRKDGSHYQVLATVS 651

Query: 525 VLEYSIIPLPN--------------AQTMLTFVNVTDSVRAER--ALTEKNEALRKADEI 568
            +      + +               + +  +    + +  ER   L + ++    A+  
Sbjct: 652 PIRQENGEVTHYVTVQADITEKKQLGEELDQYRYHLEEMVNERTLQLAQAHQRAESANRA 711

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  I+G T LLK     + +  Q   +E I  ++  LL ++ DIL
Sbjct: 712 KSAFLANMSHEIRTPMNAILGLTYLLKR---DTPDHTQHDRLEKIDNAAQHLLTIITDIL 768

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ +DAG M L      L  +L+ V   ++ +     + I V           D  RL 
Sbjct: 769 DLSKIDAGKMVLEQGDFSLTAMLDNVSALMSEQARAKGLTIIVDIGDSPAWVHGDITRLR 828

Query: 689 QIFSKILSNAMDFSSKGST---VILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVS 744
           Q      +NA+ F+ +GS    V ++    NG    F V++ G  I  +  + +F  F  
Sbjct: 829 QALLNYAANAIKFTEQGSVTLRVRVERPLSNGYLLRFEVEDTGIGISPEQREKLFQAFEQ 888

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 R   G GLGL+I      L GG V + S+    +     
Sbjct: 889 ADASTTRKYGGTGLGLAITSRLATLMGGEVGVESTQGKGSCFWFT 933


>gi|295706458|ref|YP_003599533.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
 gi|294804117|gb|ADF41183.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
          Length = 590

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 173/418 (41%), Gaps = 28/418 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  +            N  T   I+T +  G     F  +  Q+       N   + 
Sbjct: 197 RITAPLRKMRQAAFEVTKGNFDTKVPILTHDEIGELAIAFNQMGRQLKFNLNALNQEKEQ 256

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  DG I ++NP         E+ L    + +++          ++
Sbjct: 257 LSSILSSMADGVITFSRDGSILITNPPA-------EHFLQTWYYEQDVNNQQVPELP-AN 308

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              LF  ++ +  +    L+     +        + PL N   +   V V   +  ER L
Sbjct: 309 VVHLFQTVVETETERSAELK-----IQGKTWVILMSPLYNQTKIRGAVAVLRDMSEERKL 363

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+ +  F+ +VS+ELR+P++ + G+++ +    + S + ++ +  + I  
Sbjct: 364 ----------DKSRKDFIANVSHELRTPISMLQGYSEAIIDD-IASTDEEKKEIAQVIYD 412

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
            S  +  LVN++LDLA ++AG ++L+  ++ + +    V +       E +I++ +    
Sbjct: 413 ESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKV 472

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                 + D  R+ Q+ + ++ NA+  +     V L   +   +   SV++ G+ IP++ 
Sbjct: 473 EDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQSEIHLSVQDTGAGIPKED 532

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              VF RF        R   G GLGL+I ++ +  H G +++ S     TT   ++P 
Sbjct: 533 LPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 84/285 (29%), Gaps = 53/285 (18%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS---FVELWEIDLAFLATNPSNDELL 356
            +N +      IL ++   +  F ++  +   N     F++ W  +              
Sbjct: 249 ALNQEKEQLSSILSSMADGVITFSRDGSILITNPPAEHFLQTWYYEQD------------ 296

Query: 357 EFLRSANKLPEQLN-----WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
               +  ++PE        ++T  E         +    TW +     +  +       G
Sbjct: 297 ---VNNQQVPELPANVVHLFQTVVETETERSAELKIQGKTWVI----LMSPLYNQTKIRG 349

Query: 412 TIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            + +  +++ +  L+            +  T + +     + + + +A    + +     
Sbjct: 350 AVAVLRDMSEERKLDKSRKDFIANVSHELRTPISMLQGYSEAIIDDIASTDEEKK----- 404

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                     +  L  G  +  +                  A++   +   +  QG   L
Sbjct: 405 ---EIAQVIYDESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQG---L 458

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             +  ++ S+    N +    F  + DS R E+ LT   +   + 
Sbjct: 459 AKEKHIKLSL----NGKVEDEFEAMIDSDRMEQVLTNLIDNAIRH 499


>gi|149191397|ref|ZP_01869648.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148834746|gb|EDL51732.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 836

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 148/380 (38%), Gaps = 17/380 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L  Q +L              + H  + V +    GRI+  N AF S+    ++ +    
Sbjct: 312 LAQQAELLMNKEREATRLANVVKHTRDAVLITDKQGRIEWVNQAFESMTGFHKDEIIGIK 371

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
                        +     +     +      R  +           ++  I P+  A  
Sbjct: 372 P----GTLLQGKGSNEKAIEKLRKAVKEQQPTRVEILNFSRTKQAYWVDIEISPVFGANG 427

Query: 537 ---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              + +    ++T + + +R L     A   A+  K  F+  +S+E+R+P+  ++G   +
Sbjct: 428 ELDKFIAVERDITATKKLQRKLENAVVAADSANIAKTQFLATMSHEIRTPMNGVLGMVQV 487

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           + +      + +Q + +  I  S   L++++NDILDL  V+   ++L      +  ++  
Sbjct: 488 MLSEAK---DKQQKENLSLILESGNHLISILNDILDLTKVEQNKIELESCPFNIEQIIAP 544

Query: 654 VKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++ +      E  I + +        +F+ DR R+ Q+   +L+NA+ F+ +G   ++  
Sbjct: 545 LRSTYQAVCQEKGIELNIECHIDANMTFLGDRNRVRQVMYNLLNNAIKFTERGGVTVVIT 604

Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                     FSV+++G  I     + +F  FV       R   G GLGL+IV+  +   
Sbjct: 605 NNPTTPSLLRFSVQDSGIGIETSALERIFEPFVQADASTTREYGGTGLGLAIVKQLVEKM 664

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG +  +S     T     I
Sbjct: 665 GGTIDATSEQGQGTRFEFEI 684



 Score = 42.6 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 1/143 (0%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +A      +    + T    ++ +   A+ I D+   +++ N++F  +       +    
Sbjct: 312 LAQQAELLMNKEREATRLANVVKHTRDAVLITDKQGRIEWVNQAFESMTGFHKDEI-IGI 370

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
               LL+   S  K  E+L     ++    V   + +     +  + +   V   +    
Sbjct: 371 KPGTLLQGKGSNEKAIEKLRKAVKEQQPTRVEILNFSRTKQAYWVDIEISPVFGANGELD 430

Query: 411 GTIWMFENLTVQVDLETKYNTLV 433
             I +  ++T    L+ K    V
Sbjct: 431 KFIAVERDITATKKLQRKLENAV 453


>gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 918

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/528 (17%), Positives = 190/528 (35%), Gaps = 65/528 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +         ++        + D    +   N ++  L       L T       +  
Sbjct: 136 EQIRQHELQYRAVIETSKDGFLVVDMQGRILETNDAYACLSGYSAEELVT-------MNI 188

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---SNPRGGTIWM 415
                K+                +   ET   TW    G    V +        GG  + 
Sbjct: 189 GDLEAKMSASDVAHVLTGLAEQGHARFETQHKTWS---GHIWPVEINVTYIAAEGGRCFS 245

Query: 416 F-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +++ +   E +   L +     ++       +   +G I+  N AF ++     +  
Sbjct: 246 FLHDISQRKQDEAQLRKLSQ----AVEQSPNSNVICDTNGVIEYVNAAFTAITGYSAS-- 299

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS----I 530
                   I      + +     +++AA+  +   + +  QG       +  +Y+    +
Sbjct: 300 ------EAIGRKTGFFKSGLTQPEVYAALWQTLQ-QGEVWQGEFINRRKNGEDYTDFAIV 352

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEK-----------------------NEALRKADE 567
            P+  A   +T          ++ L ++                             A++
Sbjct: 353 SPIRQADGEITHYVAIQKDITQKKLMDEELEIYRRDLEALVVKRTSEMFEAKTQAEAANK 412

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+ ++S+E+R+P+  IIGF +L   ++   L+ KQ  Y+    +++  LL+++N++
Sbjct: 413 AKSEFLANMSHEIRTPMNAIIGFNELCLRTQ---LSDKQKDYLTKAGSAAQSLLHIINEV 469

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG--SFVADRQ 685
           LDL+ ++AG   L    + ++ ++  V   I     +  + I V  D  +       D  
Sbjct: 470 LDLSKIEAGQHMLEAIPLKISRVVKNVTDLIGVLAVDKGLTIHVDLDEHIEQYPLRGDPM 529

Query: 686 RLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNR 741
           RL QI   + SNA+ FS++GS  +  +    +G  +   F+V+++G  I       +F  
Sbjct: 530 RLQQILLNLCSNAIKFSTQGSISIRCQLGAISGQAVELKFAVQDSGIGISPAQLGLLFKP 589

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F        RR  G GLGLSI    +   GG + + S     +T    
Sbjct: 590 FSQADSSTTRRFGGTGLGLSICRGLVERMGGRIWVESEPGIGSTFCFT 637



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 84/274 (30%), Gaps = 34/274 (12%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
            +++  H   ++ + ++        D  G IL  N +Y   +               +  
Sbjct: 135 FEQIRQHELQYRAVIETSKDGFLVVDMQGRILETNDAYACLSGYSAEELVTMNIGDLEAK 194

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI---VRVLNSFGEAGIAI--DVSKEI 299
                   + +   E+      +  +  +   + +   V  + + G    +   D+S+  
Sbjct: 195 MSASDVAHVLTGLAEQGHARFETQHKTWSGHIWPVEINVTYIAAEGGRCFSFLHDISQRK 254

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               QL    + +     +  I D N  +++ N +F  +     +      +      F 
Sbjct: 255 QDEAQLRKLSQAVEQSPNSNVICDTNGVIEYVNAAFTAITGYSASEAIGRKT-----GFF 309

Query: 360 RSANKLPEQLNW--------KTWKENIFSVYKSSETHKD-----TWHLPNGQTLHVIVTS 406
           +S    PE            + W+    +  K+ E + D          +G+  H +   
Sbjct: 310 KSGLTQPEVYAALWQTLQQGEVWQGEFINRRKNGEDYTDFAIVSPIRQADGEITHYVA-- 367

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
                   + +++T Q  L  +   + +   E +
Sbjct: 368 --------IQKDIT-QKKLMDEELEIYRRDLEAL 392



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 70/211 (33%), Gaps = 32/211 (15%)

Query: 123 HYIKLSKATEKLRKEGQS-FDLVAETQNDCAIKIEGRVS-----GSCAFLRILSLDGIYS 176
               ++     L ++G + F+   +T +     +E  V+     G   F  +  +     
Sbjct: 196 SASDVAHVLTGLAEQGHARFETQHKTWSGHIWPVEINVTYIAAEGGRCFSFLHDISQRKQ 255

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           + A+                   +         D  G I + N ++   T   G    +A
Sbjct: 256 DEAQLRK-----------LSQAVEQSPNSNVICDTNGVIEYVNAAF---TAITGYSASEA 301

Query: 237 IGESRKLFKE-----EIKKRMISSSALEKNFC-ETVSTLEHGNNKS-YKIVRVLNSF--- 286
           IG     FK      E+   +  +    + +  E ++  ++G + + + IV  +      
Sbjct: 302 IGRKTGFFKSGLTQPEVYAALWQTLQQGEVWQGEFINRRKNGEDYTDFAIVSPIRQADGE 361

Query: 287 --GEAGIAIDVSKEITVNDQLTHTYEILHNL 315
                 I  D++++  ++++L      L  L
Sbjct: 362 ITHYVAIQKDITQKKLMDEELEIYRRDLEAL 392


>gi|213968375|ref|ZP_03396519.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1]
 gi|301384641|ref|ZP_07233059.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058906|ref|ZP_07250447.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302133019|ref|ZP_07259009.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927013|gb|EEB60564.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1]
          Length = 576

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/523 (22%), Positives = 208/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 TQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+  
Sbjct: 342 KDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VSRAQVGILDGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|149202987|ref|ZP_01879958.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
 gi|149143533|gb|EDM31569.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
          Length = 720

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 181/446 (40%), Gaps = 18/446 (4%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           ANKL ++   +   E +    ++     +     +   L   +            EN  V
Sbjct: 4   ANKLADERRARLAAERLLEQKQAELQAANRKLGKHALALSHEIHETRAEVQTVRDENQRV 63

Query: 422 QVDLETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           + DL   Y       +    +I+ + +G A F  D R+  +N A+ +++   E      +
Sbjct: 64  KSDLNDAYQKVEIAERRLWHSIETIQDGFAFFDADSRMIAANNAYLAVFDGLEAVKPGVS 123

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNA 536
           +I  +                        D  +  +     + L +   ++         
Sbjct: 124 YIEILQFITEEGIVNIGALKPQEWREKMLDRWQSTQPEPEVIRLWNGQYIKLIDQRGHGG 183

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +   +N+TD++R E+ L E       A+  K+SF+ ++S+E+R+P+  ++G  +LL  
Sbjct: 184 DVVSLALNITDTIRYEKELKEARRRAEAANRAKSSFLANMSHEIRTPMNGVVGMAELLME 243

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L  +Q  +   I  S   LL ++ND+LD + ++A  + L+     L   ++E+  
Sbjct: 244 TE---LTEEQRLFTSTIKNSGEALLVIINDVLDYSKIEAEKLILHAEPFDLERCIHELVT 300

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +     +  + + V  D  L + FV D  R+ QI + +L NA+ F+  G   V +    
Sbjct: 301 LMQVNARDKGLDVLVDYDLFLPTQFVGDPGRIRQIMTNLLGNAVKFTENGHVLVRVTGVY 360

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
            + +       +V++ G  IP D    +F  F  V +    +  G GLGL+I +  I + 
Sbjct: 361 SDTEGRASIHVTVEDTGIGIPPDKIDHIFGEFNQVDDERNRKFEGTGLGLAISQKLIRMM 420

Query: 769 GGHVSISSSDEGVTT--INCRIPSKE 792
           GG + + S     +    +  +P  E
Sbjct: 421 GGKIWVESEPGNGSIFGFSISLPVAE 446



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 79/204 (38%), Gaps = 5/204 (2%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
              +  ++    + +   E+ +  + +++         +S   H      + VR  N   
Sbjct: 4   ANKLADERRARLAAERLLEQKQAELQAANRKLGKHALALSHEIHETRAEVQTVRDENQRV 63

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           ++ +     K      +L H+ E +       A FD +  +   N +++ +++  L  + 
Sbjct: 64  KSDLNDAYQKVEIAERRLWHSIETIQ---DGFAFFDADSRMIAANNAYLAVFD-GLEAVK 119

Query: 348 TNPSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              S  E+L+F+     +    L  + W+E +   ++S++   +   L NGQ + +I   
Sbjct: 120 PGVSYIEILQFITEEGIVNIGALKPQEWREKMLDRWQSTQPEPEVIRLWNGQYIKLIDQR 179

Query: 407 NPRGGTIWMFENLTVQVDLETKYN 430
              G  + +  N+T  +  E +  
Sbjct: 180 GHGGDVVSLALNITDTIRYEKELK 203


>gi|295087116|emb|CBK68639.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 637

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/513 (22%), Positives = 210/513 (40%), Gaps = 42/513 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            K   + +       +L    +A+  +D       F N  F  L   D   +      D+
Sbjct: 14  EKSELIRENSQEILSVLAAHQIALWEYDIITGKCSFSNDYFFTLGLKDAGIIFE--DIDD 71

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKS------------SETHKDTWHLPNGQTLHV 402
              F+      PE + +  +K+    +  S            SE  K  W   +  +   
Sbjct: 72  FYRFIH-----PEDIEF--YKQAFAEMLSSDSKTSQIRVRCISEQGKVIWLEDHFLSYKE 124

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              S+P     +   N+T Q + E     L +   + I+ L E          I + +  
Sbjct: 125 SCESHPGKLLAYTV-NVTSQCEKEQHIKYLEEYNRKIIEALPE---------FIFIFDDN 174

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL 520
           F                +  +     R     +  DLF   I     D + K ++  LE+
Sbjct: 175 FFITDVLMAPGTILLHPVEVLRGADGRSIYSPEVSDLFICNIRECLRDGKLKEIEYPLEV 234

Query: 521 -LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             S    +  I P    + +    ++ D ++  + L E       AD++K+ F+ ++S+E
Sbjct: 235 DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHE 294

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++++    +     ++ +Y+E I  +S +LL L+NDILDL+ +++G  +
Sbjct: 295 IRTPLNAIVGFSEIIA---VTESEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSE 351

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +++  + +  L+ EV++    KM   N+ +KVI          DR R++Q+    LSNA+
Sbjct: 352 MHFQQVEIAGLVEEVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAI 410

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             + KGS + L    +       V + G  I ++    +F RF       Q  G GLGLS
Sbjct: 411 KNTEKGS-ITLGLKHEGSWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ--GTGLGLS 467

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +S +   GG + ++S     +T    +P +E
Sbjct: 468 ICKSIVERLGGRIEVTSELGQGSTFALYLPYQE 500


>gi|293370768|ref|ZP_06617314.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292634128|gb|EFF52671.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 635

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/513 (22%), Positives = 210/513 (40%), Gaps = 42/513 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            K   + +       +L    +A+  +D       F N  F  L   D   +      D+
Sbjct: 12  EKSELIRENSQEILSVLAAHQIALWEYDIITGKCSFSNDYFFTLGLKDAGIIFE--DIDD 69

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKS------------SETHKDTWHLPNGQTLHV 402
              F+      PE + +  +K+    +  S            SE  K  W   +  +   
Sbjct: 70  FYRFIH-----PEDIEF--YKQAFAEMLSSDSKTSQIRVRCISEQGKVIWLEDHFLSYKE 122

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              S+P     +   N+T Q + E     L +   + I+ L E          I + +  
Sbjct: 123 SCESHPGKLLAYTV-NVTSQCEKEQHIKYLEEYNRKIIEALPE---------FIFIFDDN 172

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL 520
           F                +  +     R     +  DLF   I     D + K ++  LE+
Sbjct: 173 FFITDVLMAPGTILLHPVEVLRGADGRSIYSPEVSDLFICNIRECLRDGKLKEIEYPLEV 232

Query: 521 -LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             S    +  I P    + +    ++ D ++  + L E       AD++K+ F+ ++S+E
Sbjct: 233 DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHE 292

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++++    +     ++ +Y+E I  +S +LL L+NDILDL+ +++G  +
Sbjct: 293 IRTPLNAIVGFSEIIA---VTESEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSE 349

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +++  + +  L+ EV++    KM   N+ +KVI          DR R++Q+    LSNA+
Sbjct: 350 MHFQQVEIAGLVEEVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAI 408

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             + KGS + L    +       V + G  I ++    +F RF       Q  G GLGLS
Sbjct: 409 KNTEKGS-ITLGLKHEGSWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ--GTGLGLS 465

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +S +   GG + ++S     +T    +P +E
Sbjct: 466 ICKSIVERLGGRIEVTSELGQGSTFALYLPYQE 498


>gi|241664592|ref|YP_002982952.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240866619|gb|ACS64280.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 1436

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/519 (21%), Positives = 195/519 (37%), Gaps = 44/519 (8%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
             E T+  QL+    ++  +   +   D  +     N +F  ++    A L      +   
Sbjct: 555  AEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASLLGRTPQELGL 614

Query: 354  -------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                    L +  + A ++ E    +   +      ++     + +HLP+GQ        
Sbjct: 615  YSVSNTSPLSDINQRAAQISESTREELIIDTPDGQSRNVLYWIEPFHLPDGQP------- 667

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-----DGRIKLSNP 461
                GT+    +++   D + +   L +   E  + L   V  F        GRI     
Sbjct: 668  ---AGTVASLVDISEIRDAQARAERLEQRLREVTESLPALVYQFELPPGEVQGRITYVAG 724

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                    E   L        +           +     A  +T  D + + +       
Sbjct: 725  KAHDTLGVEPQDLLRYLSTPELLIFQDDRQRVLESVLASARELTPLDLQFRHVS---PDG 781

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVS 577
            S   L    IP   A     +      V  ER    AL     A   A   K+ F+  +S
Sbjct: 782  SVRWLHARSIPHREADGRTVWNGYLSDVTTEREQADALEAAKNAAESALHAKDRFLAMMS 841

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +E+R+P+  ++G  +LL+ +K   L  +Q Q V  +  S   LL++++DILD A ++AG 
Sbjct: 842  HEIRTPMNGVLGLVELLQQTK---LEGEQKQMVSLVQDSGRALLHILDDILDYAKIEAGR 898

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
            + ++ +   L  + +     +A++ HE ++ + V     +  S   D  RL QI   +LS
Sbjct: 899  LDISPTATDLRAVFDGTVGLLASRAHEKSLTVHVDVAADVPASVSVDSIRLRQILFNLLS 958

Query: 697  NAMDFSSKGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA+ F+  GS V L      AA D       V + G  I  ++  ++F  FV       R
Sbjct: 959  NAIKFTDTGS-VRLSAQCTYAADDTAHLAICVSDTGIGISAEVQATLFAPFVQAERSTTR 1017

Query: 752  R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            R  G GLGL+I      L GG + + S+    T +   +
Sbjct: 1018 RYGGTGLGLAISRQLAGLMGGKLVMESAQGQGTAVTLEL 1056



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 87/300 (29%), Gaps = 47/300 (15%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E  +     + L+  +S  + L +++ F +  +D A   +  N ++           
Sbjct: 545 LRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASL 604

Query: 234 QKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIVR 281
                +   L+              ++   E    E +     G ++        + +  
Sbjct: 605 LGRTPQELGLYSVSNTSPLSDINQRAAQISESTREELIIDTPDGQSRNVLYWIEPFHLPD 664

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                G     +D+S+      +     + L  +T ++              + V  +E+
Sbjct: 665 -GQPAGTVASLVDISEIRDAQARAERLEQRLREVTESL-------------PALVYQFEL 710

Query: 342 DLAFLATNPSN-------------DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
               +    +               +LL +L +   L  Q + +   E++ +  +     
Sbjct: 711 PPGEVQGRITYVAGKAHDTLGVEPQDLLRYLSTPELLIFQDDRQRVLESVLASARELTPL 770

Query: 389 KDTWH--LPNGQTLHVIVTSNP----RGGTIW--MFENLTVQVDLETKYNTLVKVQGETI 440
              +    P+G    +   S P     G T+W     ++T + +               +
Sbjct: 771 DLQFRHVSPDGSVRWLHARSIPHREADGRTVWNGYLSDVTTEREQADALEAAKNAAESAL 830



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 89/306 (29%), Gaps = 35/306 (11%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
            L ++ ++       +  QLS   +L+       +  D       +          P+  
Sbjct: 544 QLRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRAS 603

Query: 110 -----TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI--------- 155
                   L   +         +++   ++  E    +L+ +T +  +  +         
Sbjct: 604 LLGRTPQELGLYSVSNTSPLSDINQRAAQI-SESTREELIIDTPDGQSRNVLYWIEPFHL 662

Query: 156 -EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            +G+ +G+ A L  + +  I    A      ++L         L    +      +  G 
Sbjct: 663 PDGQPAGTVASL--VDISEIRDAQARAERLEQRLREVTESLPALVYQFELP--PGEVQGR 718

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR-----MISSSALEKNFCETVSTL 269
           I +           E     + +     L  ++ ++R     + S+  L     +     
Sbjct: 719 ITYVAGKAHDTLGVEPQDLLRYLSTPELLIFQDDRQRVLESVLASARELTPLDLQFRHVS 778

Query: 270 EHGNNKSYKIVRVLNSFGEA-----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
             G+ +      + +   +      G   DV+ E    D L        +     A+  +
Sbjct: 779 PDGSVRWLHARSIPHREADGRTVWNGYLSDVTTEREQADALEAAKNAAES-----ALHAK 833

Query: 325 NRYLQF 330
           +R+L  
Sbjct: 834 DRFLAM 839


>gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
 gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
          Length = 559

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 10/259 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+        +  +  + L    E    A + K  F+  +S+E+R+P+  +IG  DLL  
Sbjct: 137 QSAQLHQKTQELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMD 196

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S+   L  +Q +Y   I  S+  L+N++NDILD + +++G M+L      L   + EV  
Sbjct: 197 SE---LQDEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFG 253

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
             + +  + N+ +    + ++ S V  D  RL Q+   ++SNA+ F+++G   +++  A+
Sbjct: 254 LFSGEASKKNLELTYFIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAK 313

Query: 715 DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
              +     F+VK+ G  I       +F  F         +  G GLGL+I +S + + G
Sbjct: 314 AEENRLTLEFTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMG 373

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S +    T    I
Sbjct: 374 GEIEVDSKEGEGATFVFTI 392


>gi|56695057|ref|YP_165404.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56676794|gb|AAV93460.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 739

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 187/450 (41%), Gaps = 28/450 (6%)

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSNPRGGTIWMFENLTV 421
           NKL E+   +   E +  + ++  +  +      G+  L +      +   +    +   
Sbjct: 5   NKLAEERRARLAAERLLELKQAELSAAN---RKLGRHALALTKQIGEKQAEVATVRDENE 61

Query: 422 QVD-----LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +V         K     +    +I  + +G A F  D ++  +N A+ +++   +     
Sbjct: 62  KVKSDLTVANAKIEVAERRLWHSIQTIQDGFAFFDSDSKLIGANTAYLNVFDGLDEVAPG 121

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER----KSLQGTLELLSDSVLEYSIIP 532
            +++R +           D  +L A        ER          + + +D  ++     
Sbjct: 122 ISYMRILQLMTEEGI--IDTGELAAEEWRQMMHERWISPTPEPVVIRMWNDQYVKMIDQR 179

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +   +N+T +VR E  L    E    A+  K++F+ ++S+E+R+P+  ++G  +
Sbjct: 180 GHGGDVVSLALNITSTVRYEAELRAAREKAEAANRAKSAFLANMSHEIRTPMNGVVGMAE 239

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +   +L+ +Q  Y   I  S   LL ++ND+LD + ++A  M L+     L   ++
Sbjct: 240 LLCDT---ALDEEQQLYASTIKNSGEALLVIINDVLDYSKIEAEKMMLHPEPFDLERCIH 296

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           EV   +   + +  + + V  D  L + FV D  R+ Q+ + +L NA+ F++KG   + +
Sbjct: 297 EVAMLMQPIVRDKGLTLLVDYDLFLPTLFVGDPGRVRQVLTNLLGNAVKFTTKGHILIRV 356

Query: 711 KAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
               D          ++++ G  IP +    +F  F    +   R+  G GLGL+I +  
Sbjct: 357 TGVPDPATGRCAIHVAIEDTGIGIPREKLAHIFGEFNQVENERNRQFDGTGLGLAISQRL 416

Query: 765 INLHGGHVSISSSDEGVTT--INCRIPSKE 792
           I + GG V + S +   +       +P  E
Sbjct: 417 IQMMGGTVWVESEEGRGSCFGFRVTLPMSE 446



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +K      +L H+ + +       A FD +  L   N +++ +++  L  +A   S   +
Sbjct: 72  AKIEVAERRLWHSIQTIQ---DGFAFFDSDSKLIGANTAYLNVFD-GLDEVAPGISYMRI 127

Query: 356 LEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L+ +     +   +L  + W++ +   + S         + N Q + +I      G  + 
Sbjct: 128 LQLMTEEGIIDTGELAAEEWRQMMHERWISPTPEPVVIRMWNDQYVKMIDQRGHGGDVVS 187

Query: 415 MFENLTVQVDLETKY 429
           +  N+T  V  E + 
Sbjct: 188 LALNITSTVRYEAEL 202


>gi|78049360|ref|YP_365535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037790|emb|CAJ25535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 678

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 102/514 (19%), Positives = 197/514 (38%), Gaps = 57/514 (11%)

Query: 308 TYEILHNLTVAIAI----FDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFL 359
            +EI HN+     +    FD  + + +     N +F     +    L  +          
Sbjct: 32  YHEIFHNIDAGFCVIDMVFDGEQAVDYVIRTTNGAFERYTGLSPNALNVSI--------- 82

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWM 415
              N LPE    + W +    V ++    H +       +   V    V    +     +
Sbjct: 83  --RNLLPEHE--QEWFDRYGHVARTGNRIHFEMQAKALKRWYSVDAFRVGQPEQARVAIL 138

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F ++T +  +E +            D L   V V    G ++  N A+   +  + +  +
Sbjct: 139 FMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT 198

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIP 532
                    +  S   +  D       +  S  ++R           D     +E +  P
Sbjct: 199 --------VSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQWRWIEMTATP 250

Query: 533 LPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYEL 580
             +A      +  +     E R +    E L +++            +K+ F+  +S+EL
Sbjct: 251 RYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHEL 310

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVDAGIM 638
           R+PLT I+G+++LL       +   Q  Y  +  I++S+     L++D+LDL+++  G +
Sbjct: 311 RTPLTTILGWSELLLQR----VEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKV 366

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L   ++ L + + E   +        +  +++         + D  RL Q+   +LSNA
Sbjct: 367 QLEVESLDLVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNA 426

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + F+     + +K  RD+G  + SV ++G  I  +    +F RF        R   G+GL
Sbjct: 427 IKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGL 486

Query: 757 GLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           GL+IV+  + +HGG V  +S       T   R+P
Sbjct: 487 GLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +      ++ T  
Sbjct: 141 DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVS 200

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +    +    F+ E+   +     L             G  +  ++           
Sbjct: 201 AWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRH---DGQWRWIEMTATPRYSADGR 257

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G AG + DV+++  +        E
Sbjct: 258 FIGLAGSSPDVTEQREIELAREQLLE 283



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 28/237 (11%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N ++++ T         +I       ++E   R                       + Y 
Sbjct: 64  NGAFERYTGLSPNALNVSIRNLLPEHEQEWFDR--YGHVARTGNRIHFEMQAKALKRWYS 121

Query: 279 IVRV----LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
           +             A + +D+++   V  +L  +      L   +     + D    ++F
Sbjct: 122 VDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRF 181

Query: 331 HNRSFVELWEIDL------AFLATNPSNDELLEFLRSANKLPEQLNWKTW--KENIFSVY 382
            N ++ E + +D+      A+      +D        A  L EQ   +           +
Sbjct: 182 VNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQW 241

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +  E      +  +G+ +          G      ++T Q ++E     L++ +   
Sbjct: 242 RWIEMTATPRYSADGRFI----------GLAGSSPDVTEQREIELAREQLLESERSA 288


>gi|332885680|gb|EGK05926.1| hypothetical protein HMPREF9456_02190 [Dysgonomonas mossii DSM
           22836]
          Length = 916

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/482 (20%), Positives = 200/482 (41%), Gaps = 30/482 (6%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           +F ++  L F N+ F+         L  N S D+  +         +QL+ + W + I  
Sbjct: 314 VFMEDGQLIFANQQFL---------LHNNISKDK--DISDYKITELKQLSLEQW-DLILK 361

Query: 381 VYKSSETHKDTWHLPNGQT--------LHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNT 431
             +S+E++K      + +T        +  +         IW +  N T Q   E +   
Sbjct: 362 KLESNESYKYNIIYTDSETEKTSYFDCISYLTRDTFGTKFIWSYWSNTTKQKYAEIESKN 421

Query: 432 LVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              +    +D++   V +  P  D +    N      +  + +  S  T         + 
Sbjct: 422 TRNLMNMVLDNMPISVFIKNPLNDYKYIYWNKISTQFYLVQNDDFSDKTDFDIFPKEVAE 481

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
            Y   D       +      E    +G +  +    +  +     ++  +    ++T+  
Sbjct: 482 RYRAEDIAVFETGVPQRVFQEFVDDEGNIRYVDILKIRLNSETDNSSLVIGLGWDITELK 541

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ LT       + D++K++F+ ++S+E+R+PL  I+GF+ ++  +       K++ Y
Sbjct: 542 QIEKELTTAKLKAEQLDKLKSAFLSNMSHEIRTPLNAILGFSRIIAET---DDQEKRNYY 598

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             ++ ++S  LL LVN+ILD + +++GI++          L  E+ ++ A++ H     +
Sbjct: 599 FNFVESNSGRLLGLVNEILDFSKIESGIVEFEPEDFDFGMLCLEIYETYASQCHPET-EL 657

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              + G      +DR R+ Q+ S ++ NA  F+ KG  +       + +    V ++G  
Sbjct: 658 IYNNIGAELWIRSDRNRIHQVLSNLIINAQKFTKKG-YIKYGFEVIDNNVKVYVNDSGIG 716

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ED    +F RF+         G GLGL+I  S +   GG +S++S  +  +     +P
Sbjct: 717 IVEDQLDKIFERFMQVDS--NAIGTGLGLAICRSIVERLGGEISVTSELQKGSCFTFTLP 774

Query: 790 SK 791
            +
Sbjct: 775 YE 776


>gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1222

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 107/539 (19%), Positives = 220/539 (40%), Gaps = 41/539 (7%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
             +  +++  ++  G+  + I+  + E  + D+      I  + +  I   ++ R L   
Sbjct: 419 KRRHVELLDFIS--GQIALVIERKRNEEQIIDKTARLNAIFESSSHLIWSVNRKRGLTSF 476

Query: 332 NRSFVE-----------LWEIDLA---FLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           N+++             +++  +     + ++P   + ++         +  +++    N
Sbjct: 477 NQNYANAIFRKYQKYPTIYDEGVTKEVLVLSDPEFHDSIDKKYKDAFNGQPQHFEACNTN 536

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
                   ET+ +   LP+G+   V   S+          ++T +   E       +   
Sbjct: 537 QNGEIFWRETYLNPIFLPDGRIDEVSGISH----------DITEKKQWEITIQESEEKFR 586

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
              +   +        G I + +P+   L    +  +  G HI     T  +  N     
Sbjct: 587 NIFESFQDIYYRTDLSGYITMISPSGCELSGYTQEEI-IGKHISEFFTTPKQQVNLIREV 645

Query: 498 DLFAAIITSFDDERKSLQGT-LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            L    + +++       G  ++ +S+  L Y+    P         ++T   +A + L 
Sbjct: 646 -LKTGRVKNYETNVNIKGGESIQSISNIRLIYNNEGKPIG-VDGVARDITFLKKASQELY 703

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              E   K+ ++K +F+ ++S+E+R+P+  +IG  DLL  +    L  +Q +YV+ I  S
Sbjct: 704 HAKEIAEKSLKVKENFLANMSHEIRTPMNGVIGMIDLLNET---PLMEEQRKYVQTIKKS 760

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LLN++NDILDL+ ++AG M+L  + I +   + ++      +    NI +    D  
Sbjct: 761 SETLLNILNDILDLSKIEAGKMQLRLAPISIEQTVEKLHALFYQQATLKNIDLLYSIDSN 820

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD-NGDFIFSVKNNGSSIP 731
           +   V AD  RLLQI S + SNA+ F+ +GS    + L++ +D       ++ + G  I 
Sbjct: 821 VPKVVLADETRLLQILSNLTSNAIKFTDQGSVRIQISLQSKKDLVNKIRVNISDTGIGIA 880

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +D    +F  F  V N+      G GLGL+I +    L  G + + +     +      
Sbjct: 881 QDKLNVLFGYFNQVDNSSSKSYGGTGLGLAISKELSKLMNGEIGVQTEANKGSVFWFTF 939



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 106/284 (37%), Gaps = 18/284 (6%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             E    + + +   DQ+  + + N +F+E+   +   L       E LE  +  NK  E
Sbjct: 37  LQEAFEKINLLVITIDQDGLIVYANEAFLEVIGWEKQRLLGENW-KEFLEPGKDKNK-EE 94

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG----TIWMFENLTVQV 423
            +     K+      K     K+  +         +V  +P G     T  + E++T + 
Sbjct: 95  HIYTLIKKQGFIDQLKRKFLSKEGDYR---TIKFNVVIHHPIGNDVHLTTLIGEDITDKK 151

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +            +  ++ ++ + VF  DG+I+  N A++ + +  +  +    + R+I
Sbjct: 152 KVIRALKDSNDQLQDLFENANDLIQVFDLDGKIQFVNRAWKDILQYSDEEILK-LNFRDI 210

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTML 540
            A            ++ A      DD+ +++  +    +  V+                 
Sbjct: 211 IAKEQVGVTMEHLNNILAG---KKDDKFETVFTSKNGRNIQVICSVNVRYEKEKPVSFRG 267

Query: 541 TFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRS 582
            F + T+ +RAERA  L  K   L    +  +S + ++  ELR+
Sbjct: 268 IFHDNTEHMRAERAQNLYYKISTLAINSDRLDSLLDNIHKELRT 311



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 134/341 (39%), Gaps = 47/341 (13%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           D +  ++ E  +          + +  F+ ++ LV   DQ G I++AN ++    E  G 
Sbjct: 15  DELIQQVKELQIINANQRPE-KILQEAFEKINLLVITIDQDGLIVYANEAFL---EVIGW 70

Query: 232 VFQKAIGES----RKLFKEEIKKRMISSSALEKNFCETVSTL---EHGNNKS--YKIVRV 282
             Q+ +GE+     +  K++ K+  I +   ++ F + +      + G+ ++  + +V +
Sbjct: 71  EKQRLLGENWKEFLEPGKDKNKEEHIYTLIKKQGFIDQLKRKFLSKEGDYRTIKFNVV-I 129

Query: 283 LNSFG-----EAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNR 333
            +  G        I  D++ +  V   L        ++  N    I +FD +  +QF NR
Sbjct: 130 HHPIGNDVHLTTLIGEDITDKKKVIRALKDSNDQLQDLFENANDLIQVFDLDGKIQFVNR 189

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           ++ ++ +          S++E+L+         EQ+       N     K  +  +  + 
Sbjct: 190 AWKDILQY---------SDEEILKLNFRDIIAKEQVGVTMEHLNNILAGKKDDKFETVFT 240

Query: 394 LPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYN-----TLVKVQGETIDH 442
             NG+ + VI + N R           +F + T  +  E   N     + + +  + +D 
Sbjct: 241 SKNGRNIQVICSVNVRYEKEKPVSFRGIFHDNTEHMRAERAQNLYYKISTLAINSDRLDS 300

Query: 443 LSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRN 482
           L + +     + R I   N    +L+  + N L+   ++  
Sbjct: 301 LLDNI---HKELRTIIAVNNFHVALYDRDHNYLNFPYYVDE 338



 Score = 41.1 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 3/146 (2%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               K+  E  + ++  V     DG I  +N AF  +   E+ RL  G + +        
Sbjct: 31  QRPEKILQEAFEKINLLVITIDQDGLIVYANEAFLEVIGWEKQRLL-GENWKEFLEPGKD 89

Query: 490 YYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
              E   + L      I     +  S +G    +  +V+ +  I      T L   ++TD
Sbjct: 90  KNKEEHIYTLIKKQGFIDQLKRKFLSKEGDYRTIKFNVVIHHPIGNDVHLTTLIGEDITD 149

Query: 548 SVRAERALTEKNEALRKADEIKNSFV 573
             +  RAL + N+ L+   E  N  +
Sbjct: 150 KKKVIRALKDSNDQLQDLFENANDLI 175



 Score = 38.4 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 100/290 (34%), Gaps = 25/290 (8%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN----- 225
           + G  + + E     +++ +  +    +F+S   L+W  ++   +   N +Y        
Sbjct: 429 ISGQIALVIERKRNEEQIIDKTARLNAIFESSSHLIWSVNRKRGLTSFNQNYANAIFRKY 488

Query: 226 ----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK--I 279
               T  +  V ++ +  S   F + I K+   +   +    E  +T ++G     +  +
Sbjct: 489 QKYPTIYDEGVTKEVLVLSDPEFHDSIDKKYKDAFNGQPQHFEACNTNQNGEIFWRETYL 548

Query: 280 VRVLNSFG----EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
             +    G     +GI+ D+++    EIT+ +       I  +        D + Y+   
Sbjct: 549 NPIFLPDGRIDEVSGISHDITEKKQWEITIQESEEKFRNIFESFQDIYYRTDLSGYITMI 608

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           + S  EL       +       E      +  K    L  +  K      Y+++   K  
Sbjct: 609 SPSGCELSGYTQEEIIGKH-ISEFF----TTPKQQVNLIREVLKTGRVKNYETNVNIKGG 663

Query: 392 WHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             + +   + +I  +  +  G   +  ++T       +     ++  +++
Sbjct: 664 ESIQSISNIRLIYNNEGKPIGVDGVARDITFLKKASQELYHAKEIAEKSL 713


>gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
 gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
          Length = 1521

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 119/655 (18%), Positives = 239/655 (36%), Gaps = 65/655 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
              +  + ++ ++    ++  +    V   D   +I+W N  +++ T   G    +A+G+
Sbjct: 364 RAEMLARNMTANLERLALVAKNTSNAVVITDVKRNIVWVNEGFERIT---GYSLAEALGK 420

Query: 240 SRKLF------KEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIV------RVLNSF 286
           S           + + + M  +    ++F  E V+  + G     ++             
Sbjct: 421 SPGKLLQCSNTDQGVARAMKIALDAGESFKGEIVNRTKSGREYWIELEIQPRYNDKNEPI 480

Query: 287 GEAGIAIDVSKEITVNDQL-------THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           G   I  D+S+      +L             L NL   I+  D+   +   N +F  + 
Sbjct: 481 GFMAIESDISERKATYQRLEAALRENNALLSTL-NLHGIISTADREGIITDVNDAFCNIS 539

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 L            L  ++          W +    +    E         +G  
Sbjct: 540 GYSREELIGQTY------RLVDSHTHSTAFWQSMWNDIANGISWRGEICNKA---KDGSL 590

Query: 400 LHVIVTSNPRGGTIWMFE-------NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG- 451
             V  T  P   +    E       ++T   + +T             D    G+  +  
Sbjct: 591 YWVDTTIAPFNNSTGQIERYISIQVDITANKNQQTNLIIARNQLVRAADVAELGIWTWNI 650

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           P+G +   +     ++   E   +    +           +  D  ++  AI  + ++E 
Sbjct: 651 PEGTLSF-DDRMNDIYGVPEELHNAPIPL----TYWYSLVHPEDIPEVKRAIKVALENES 705

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRK 564
              Q    ++ + V                    M    ++T    AE  L    E   +
Sbjct: 706 VYRQVFRIIVRNQVHFIQSTGTVERDESGKAMLMMGINRDITQQREAENILKTARETAEE 765

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K++F+ ++S+ELR+P+  I+G   LL+ +    L+ KQ+ Y     A++  LL+L+
Sbjct: 766 ANKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLDRKQADYAVKSEAATRTLLHLL 822

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + +++G M L      ++ +L ++   +++ +    + +    D  L  FV  D
Sbjct: 823 NDILDFSKIESGKMALECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPALPQFVEGD 882

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL QI + +  NA+ F+  G  V    ++     +    F V++ G  I  +  +S+F
Sbjct: 883 SMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIF 942

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT--TINCRIPS 790
           + F        RR  G GLGL I + F+ L GG +++ S     +       +P 
Sbjct: 943 SGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLALESQPGQGSLFHFTITLPL 997


>gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1153

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 155/386 (40%), Gaps = 23/386 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +    D                ++  EG+     DG ++ +NPA   +          
Sbjct: 235 NQIRTLNDSNAALRKAEAKYRSMFENSREGLFKTDQDGGLESANPALARILGY-----QS 289

Query: 477 GTHIRNIAATCSRYY--NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + + A    ++    +     L+  +  + +     ++G     S    E++++ + 
Sbjct: 290 PRDLPDGATMLKQHLIPEKEKRIQLYRELEEAGEAVGVEVRGVRRDGSFFWGEFTVLRVE 349

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEA----LRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                            ER   E  E        A+E K+ FV ++S+E+R+P+  IIG 
Sbjct: 350 GEAESSRSYECILVDTTERKFREIAEREKQAAVMANETKSLFVANMSHEIRTPMNAIIGL 409

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + L   +    L S+Q  Y+  I  S+  LL ++NDILDL+ ++AG + +      L D 
Sbjct: 410 SSLALRT---DLTSRQRDYLTKIEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDA 466

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           LN + + ++ K  E  + +       + +  + D  RL Q+   +  NA+ F+ +G  +I
Sbjct: 467 LNNLAKMVSVKADEKGLDVIFDIGKDVPTGLIGDPTRLNQVLLNLTDNAVKFTEQGQVII 526

Query: 710 -LKAARDNGDF-----IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
            ++  R+  D       FSV + G  +       +F  F         +  G GLGL+I 
Sbjct: 527 KVRREREAADVQGSTLRFSVIDTGIGMRAQQAPYLFQSFTQADASITRKHGGTGLGLTIS 586

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
           +  ++L GG +S+SS     +T    
Sbjct: 587 KHIVDLMGGEISVSSEFGVGSTFTFT 612


>gi|39934927|ref|NP_947203.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648777|emb|CAE27299.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas
           palustris CGA009]
          Length = 610

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 176/400 (44%), Gaps = 26/400 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G +W+       +++E +   L+        ++S+ ++    +G ++  +PA  +L  T 
Sbjct: 187 GAVWLARTNGALLNVEEERYRLLAR------NMSDVISRHNRNGAVRFISPAAENLLGTP 240

Query: 471 -----ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                E+ L    H+ +  A      + + G +  +       D  +  +G         
Sbjct: 241 VARLAEHGLFDRVHVADRPAYLKAMSDAARGRETGSVEFRIRRDVARDERGRPSAAEFVW 300

Query: 526 LEYSIIPLP------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +E    PL               + +    ++T+    E+AL +      +AD  K+ F+
Sbjct: 301 VEMRCRPLESNLTTTAASNAGETEVVAVMRDITERKIHEQALDQARAEADRADAAKSRFL 360

Query: 574 QHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
             +S+ELR+PL  IIGF+D+ L+   L     ++ +Y + I+ S   LL++VN ILD++ 
Sbjct: 361 ATMSHELRTPLNAIIGFSDMILQDDVLMLGPERRKEYAQLINDSGQHLLSVVNGILDMSK 420

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +++G  ++          L      +A K  ++ I +   +   L   V D +   QI  
Sbjct: 421 MESGSFEIVPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPENLPEVVGDPRAFKQILL 480

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
            ++SNA+ F+ +G TV + AA +    +  V + G  I E+  K + + F         +
Sbjct: 481 NLVSNAIKFTERGGTVTVSAAVEGTRLVLRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRR 540

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGLSIV+S + +HGG + + S  +  TT+   +P 
Sbjct: 541 HEGTGLGLSIVKSLVRMHGGEIEVQSQIDCGTTVTVSLPL 580


>gi|325958983|ref|YP_004290449.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330415|gb|ADZ09477.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 769

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 114/646 (17%), Positives = 248/646 (38%), Gaps = 52/646 (8%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++  T    KKL    ++   + ++ +  ++ ++ +G+ +  N +    +E  G    +
Sbjct: 140 RDMTATKNTEKKLKRSYNILNSIVENTNDAIYLKNLSGNYIMVNTA---TSEIMGKPISE 196

Query: 236 AIGESRKLFKEEIKKRMISSSALE-------KNFCETVSTLEHGNNKSYKIVRVL----- 283
            IG++           +I++   E         + E++ +   G  + Y   +       
Sbjct: 197 IIGKNDWDLYHGEDAEVITTEDKEIIENIETLTYEESLYSEREGEIRDYITTKGPYMGFD 256

Query: 284 -NSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
            +  G  GI  D++    V +++         +   +   +   D +  +   N +  ++
Sbjct: 257 DSILGIFGIGRDITHLKGVEERIVKSEQKYRRLFETMIQGVVYQDSSGKITSMNPAAEKI 316

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG- 397
               LA +      D + E +           + ++     +  K  E       +P+G 
Sbjct: 317 LGYSLAEIQGQKPQDIVQESVHEDGSEFLAEEFPSY--LALNTGKEIEDVIMGLKIPSGY 374

Query: 398 QTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA---- 448
           + L V                  F ++T ++  + +     K      + ++EG A    
Sbjct: 375 RWLSVHAVPLIGDDDKPFQVYTTFNDVTDKIVAQNELKKSEKRYRSLFNKMTEGFALHEI 434

Query: 449 VFGPDGR-----IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           V   +G          NPAF  L   +   +  G     +    +  + +  G      +
Sbjct: 435 VCDSNGEPVDYIFLDINPAFEELTGLKREDI-IGRRESEVIPEDTVNWVKIYGEVALEDV 493

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
              F++   +L    ++L       +  P  N Q  + F +++  VR E  L E    L+
Sbjct: 494 SIHFNEYSSALNRHYDVL-------AFSPGKN-QFAVIFNDISQRVRIENELKETLRQLK 545

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             +     F    S++L+ PL  I  F  LL+      L+    +++ +    +  L  L
Sbjct: 546 LTNSELKQFAYIASHDLKEPLRVITSFLQLLQRRYKDQLDEDADEFINFAVDGAIHLHEL 605

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+L+ + +        ++ +   D+L  V+ ++   + ENN+    I+ GKL    AD
Sbjct: 606 IDDLLEYSKI--NTRSDEFTCVDFEDVLKIVETNLDILIKENNV---FITSGKLPKIRAD 660

Query: 684 RQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           + +++Q+F  +++N++ + S K   + + A  +   +IFSV++NG  IP    K +F  F
Sbjct: 661 KTQMIQLFQNLINNSIKYRSVKSPEIHISATNNGDKWIFSVEDNGIGIPSKYSKQIFKIF 720

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  +  G G+GL+I +  +  HGG + + +     T  N  I
Sbjct: 721 KRLHDSYEYNGTGIGLAISKRIVEKHGGTIWVDTERINGTKFNFTI 766



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 105/312 (33%), Gaps = 29/312 (9%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEID 342
           G   I  D++       +L  +Y IL+++      AI + + +      N +  E+    
Sbjct: 134 GHISINRDMTATKNTEKKLKRSYNILNSIVENTNDAIYLKNLSGNYIMVNTATSEIMGKP 193

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           ++ +      D          +  E +   T  + I    ++    +  +    G+    
Sbjct: 194 ISEIIGKNDWDLY------HGEDAEVI--TTEDKEIIENIETLTYEESLYSEREGEIRDY 245

Query: 403 IVTSNPRGG----TIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           I T  P  G     + +F    ++T    +E +     +      + + +GV      G+
Sbjct: 246 ITTKGPYMGFDDSILGIFGIGRDITHLKGVEERIVKSEQKYRRLFETMIQGVVYQDSSGK 305

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           I   NPA   +       +        +  +     +E    +  + +  +   E + + 
Sbjct: 306 ITSMNPAAEKILGYSLAEIQGQKPQDIVQESVHEDGSEFLAEEFPSYLALNTGKEIEDVI 365

Query: 516 GTLELLSD-SVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTE-KNEALRKADEI 568
             L++ S    L    +PL        Q   TF +VTD + A+  L + +       +++
Sbjct: 366 MGLKIPSGYRWLSVHAVPLIGDDDKPFQVYTTFNDVTDKIVAQNELKKSEKRYRSLFNKM 425

Query: 569 KNSFVQHVSYEL 580
              F     +E+
Sbjct: 426 TEGFAL---HEI 434



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 93/284 (32%), Gaps = 20/284 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                 + +  E+L  L  A+ I D+N  + + N +  E++    + +    +       
Sbjct: 24  EKQQISMPYNIELLSILKDAVIITDENFKISYWNPAAEEIYGWKSSEVLGKTAKT----V 79

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWM 415
           LR+     EQ N  +   +    Y++        + P   +  ++  ++  G   G I +
Sbjct: 80  LRTKFIGNEQPN-TSKMLSEKGSYENEFLQFTKKNFPLYISSKIVTITDGNGVVNGHISI 138

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T   + E K      +    +++ ++ + +    G   + N A   +         
Sbjct: 139 NRDMTATKNTEKKLKRSYNILNSIVENTNDAIYLKNLSGNYIMVNTATSEI--------- 189

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIP 532
            G  I  I           +  ++         +  ++L     L S+    + +Y    
Sbjct: 190 MGKPISEIIGKNDWDLYHGEDAEVITTEDKEIIENIETLTYEESLYSEREGEIRDYITTK 249

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            P      + + +    R    L    E + K+++      + +
Sbjct: 250 GPYMGFDDSILGIFGIGRDITHLKGVEERIVKSEQKYRRLFETM 293


>gi|331015224|gb|EGH95280.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 576

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/523 (22%), Positives = 208/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 TQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+  
Sbjct: 342 KDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VSRAQVGILDGDWPVHSFSLPPSDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|294501111|ref|YP_003564811.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
 gi|294351048|gb|ADE71377.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
          Length = 590

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 173/418 (41%), Gaps = 28/418 (6%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  +            N  T   I+T +  G     F  +  Q+       N   + 
Sbjct: 197 RITAPLRKMRQAAFEVTKGNFDTKVPILTHDEIGELAIAFNQMGRQLKFNLNALNQEKEQ 256

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  DG I ++NP         E+ L    + +++          ++
Sbjct: 257 LSSILSSMADGVITFSRDGSILITNPPA-------EHFLQTWYYEQDVNNQQVPELP-AN 308

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              LF  ++ +  +    L+     +        + PL N   +   V V   +  ER L
Sbjct: 309 VVHLFQTVVETETERSAELK-----IQGKTWVILMSPLYNQTKIRGAVAVLRDMSEERKL 363

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+ +  F+ +VS+ELR+P++ + G+++ +    + S + ++ +  + I  
Sbjct: 364 ----------DKSRKDFIANVSHELRTPISMLQGYSEAIIDD-IASTDEEKKEIAQVIYD 412

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
            S  +  LVN++LDLA ++AG ++L+  ++ + +    V +       E +I++ +    
Sbjct: 413 ESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKI 472

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                 + D  R+ Q+ + ++ NA+  +     V L   +   +   SV++ G+ IP++ 
Sbjct: 473 EDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQSEIHLSVQDTGAGIPKED 532

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              VF RF        R   G GLGL+I ++ +  H G +++ S     TT   ++P 
Sbjct: 533 LPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 84/285 (29%), Gaps = 53/285 (18%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS---FVELWEIDLAFLATNPSNDELL 356
            +N +      IL ++   +  F ++  +   N     F++ W  +              
Sbjct: 249 ALNQEKEQLSSILSSMADGVITFSRDGSILITNPPAEHFLQTWYYEQD------------ 296

Query: 357 EFLRSANKLPEQLN-----WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
               +  ++PE        ++T  E         +    TW +     +  +       G
Sbjct: 297 ---VNNQQVPELPANVVHLFQTVVETETERSAELKIQGKTWVI----LMSPLYNQTKIRG 349

Query: 412 TIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            + +  +++ +  L+            +  T + +     + + + +A    + +     
Sbjct: 350 AVAVLRDMSEERKLDKSRKDFIANVSHELRTPISMLQGYSEAIIDDIASTDEEKK----- 404

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                     +  L  G  +  +                  A++   +   +  QG   L
Sbjct: 405 ---EIAQVIYDESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQG---L 458

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             +  ++ S+    N +    F  + DS R E+ LT   +   + 
Sbjct: 459 AKEKHIKLSL----NGKIEDEFEAMIDSDRMEQVLTNLIDNAIRH 499


>gi|242278589|ref|YP_002990718.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121483|gb|ACS79179.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 832

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/419 (21%), Positives = 175/419 (41%), Gaps = 46/419 (10%)

Query: 399 TLHVIVTSNPRGGTIW-----MFENLTVQVD--------LETKYNTLVKVQGETIDHLSE 445
           T  + +TS    G +      M E LT  +           ++    +      +D+L++
Sbjct: 208 TAEIEITSKDEIGLLAGTMKNMAEELTTLISGLERAVGNATSELQDTLTYMEVIMDNLAD 267

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G+ V   +G+I ++NPA   L+   EN L  G  IR             +       ++ 
Sbjct: 268 GLLVVDINGKISVTNPALGELFGVTENELR-GKDIRTFF---------PEEMTALFELVK 317

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             + E       +EL      +    P+       T      +V   R +T + E     
Sbjct: 318 GCEHE--VYSSEIELTGRKTGKAVATPIHKMDEGDTPNICLGAVILVRDITYEKEV---- 371

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLK--------------TSKLGSLNSKQSQYVE 611
           D +K  F+  VS+ELR+P+T+I+GF  ++K                K     ++    + 
Sbjct: 372 DNLKTDFISTVSHELRTPMTSILGFAKIIKKKLEKSVFPVCNAPDKKTERAINQVKDNIG 431

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +    L  L+ND+LD+A +++G +      I +++++    Q+        ++++ V
Sbjct: 432 IIVSEGQRLTELINDVLDIAKMESGKIDWKNVPIDISEVIETSVQTTTPLWKPQDLQMVV 491

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +  + +   DR R++Q+   ++SNA+ F++ GS +   A     + + SV + GS I 
Sbjct: 492 DVEENIPTIHGDRDRVMQVLVNLISNAVKFTASGS-ITCTARSHADEIMVSVSDTGSGIS 550

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  K +F RF        G+ +G GLGL I +  ++ H G + + S     ++ +  +
Sbjct: 551 PEDQKKIFQRFKQAGDTLTGKPKGTGLGLPICKQIVDHHKGRIWVDSKLGEGSSFHFTL 609



 Score = 41.5 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 22/139 (15%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    + D LT+   I+ NL   + + D N  +   N +  EL+ +    L       ++
Sbjct: 246 NATSELQDTLTYMEVIMDNLADGLLVVDINGKISVTNPALGELFGVTENELRGK----DI 301

Query: 356 LEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--- 410
             F       PE++   ++  K     VY S     +      G+ +   +     G   
Sbjct: 302 RTFF------PEEMTALFELVKGCEHEVYSS---EIELTGRKTGKAVATPIHKMDEGDTP 352

Query: 411 ----GTIWMFENLTVQVDL 425
               G + +  ++T + ++
Sbjct: 353 NICLGAVILVRDITYEKEV 371


>gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1138

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/401 (24%), Positives = 162/401 (40%), Gaps = 33/401 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L  Q +   +           +D  +EG+    PDG I+ +NPA  ++++     L   +
Sbjct: 278 LATQREQGKELEATNARLSAIVDTAAEGIITTRPDGVIEAANPAAHAIFRHAPGELVGRS 337

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------------VL 526
            +  + A   R  + +   D  A      D   +     L    D              L
Sbjct: 338 VVELLPA--DRREDAARTLDEIAHGRRHLDPTARGEAIALRPAVDGEAGGESGKTESFPL 395

Query: 527 EYSIIPLPNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            YS+  +  A          ++T+  R E  L +  E       IK  F+  +S+E+R+P
Sbjct: 396 AYSMALVKTAAGPLYAAILRDLTEEKRLEHTLRDAKEQAEDGQRIKMEFLATMSHEIRTP 455

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  +IG   LL  +   +L + Q  Y E I  S+  LL ++NDILD + +DAG ++L   
Sbjct: 456 MNGVIGMAGLLLDT---ALQADQRGYAETIRDSAESLLVVINDILDFSKIDAGRLELEIG 512

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L  L+  V + +A +     + +   +  G  G+ + D  RL QI   +  NA+ F+
Sbjct: 513 EFELVPLVESVAEILAPRAVAKGLDLASFVPPGLRGTLLGDAGRLRQILLNLAGNAVKFT 572

Query: 703 SKGSTVIL---KAARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
             GS  IL   +A  DN           F V++ G  IPE+    +F  F         +
Sbjct: 573 DSGSVTILLNEEAPIDNDSGDGGGVRVRFEVRDTGIGIPEEDRPRLFTMFSQVDSSPARR 632

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLGL+I +    L GG + + S     +     +P K
Sbjct: 633 HGGTGLGLAICKRLTELMGGRIGLDSHPGTGSVFWVSVPLK 673


>gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681]
 gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681]
          Length = 609

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 157/388 (40%), Gaps = 32/388 (8%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLV-KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  +T ++      N    +     + ++S+GV     +GR+ L N    ++  
Sbjct: 237 GRLSVAFNYMTSRLREALSQNEEEKEKLSSILTNMSDGVVATDDNGRVILVNRRASAMLG 296

Query: 469 TEENRLSPGTHIRNIAATCSR----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             EN ++ G HI  +           Y+ S    L        D+               
Sbjct: 297 VNENEMT-GRHIAVLLGIDPEETEALYSGSSASTLLQLEPAGQDEPI------------- 342

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+  +  P+   +  +T          E+          + +  +  FV +VS+ELR+PL
Sbjct: 343 VIRVTFTPIHRREFGITGTIAVLQDVTEQE---------EMETTRREFVANVSHELRTPL 393

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I  + + L    +        ++V  I   +  ++ LV D+L L+ +D+    L    
Sbjct: 394 TTIRSYAEALDDGAMAE-PQVAERFVGVIRNETERMIRLVTDLLHLSRLDSNEAPLRMQP 452

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + ++L+EV    + +M + +IR  +  +  +G  V DR ++ Q+   ++SNA+ ++  
Sbjct: 453 TDVMEMLDEVADRFSFQMKQKHIRSGMFVEQGIGKVVIDRDQIEQVLDNLMSNALKYTPD 512

Query: 705 GSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
           G ++ ++A R+  G    SV++ G  IP+     +F RF            G GLGLSI 
Sbjct: 513 GGSIRIEARRNSEGMLSISVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGGTGLGLSIA 572

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  HGG + + S     T     +P
Sbjct: 573 REIVKAHGGQIFLESEYGQGTCTTFTLP 600



 Score = 44.5 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                  ++      IL N++  +   D N  +   NR    +  ++   +         
Sbjct: 252 EALSQNEEEKEKLSSILTNMSDGVVATDDNGRVILVNRRASAMLGVNENEMTGRH----- 306

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                     PE+        +  ++ +     +D   +       +        GTI +
Sbjct: 307 --IAVLLGIDPEETEALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTIAV 364

Query: 416 FENLTVQVDLETKYNT 431
            +++T Q ++ET    
Sbjct: 365 LQDVTEQEEMETTRRE 380


>gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
 gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
          Length = 782

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 180/447 (40%), Gaps = 26/447 (5%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSS--------ETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           A+KL E+   +   E +  + ++           H        G+T   + T       +
Sbjct: 9   ADKLAEERRARLAAERLLELKQAELSAANRKLGRHALALTKQIGETQAEVATVRDENAKV 68

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
                 +       K  T  +    +I    +G A F  D R+  +N A+ +L+   E  
Sbjct: 69  -----KSDLSQANEKIETAERRLWHSIQAFQDGFAFFDADSRLIGANTAYLNLFDGLEEA 123

Query: 474 LSPGTHIRNIAATCSRYYNESDGW--DLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
               +++R +          +     D + A+++            +++  D  L     
Sbjct: 124 APGISYMRILQILTDEGLVNTGEMKPDSWRAMMSERWLSMSPEPVVIQMWDDRYLRLIDQ 183

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                  +   +++T SV  E  L    E    A+  K++F+ ++S+E+R+P+  ++G  
Sbjct: 184 RGHGGDVVSLALDITTSVNYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMA 243

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL  +   +L+ +Q  Y   I  S   LL ++ND+LD + ++A  + L+     L   +
Sbjct: 244 ELLNDT---TLSDEQKLYANTIKNSGEALLVIINDVLDYSKIEADKLVLHEEVFDLERCI 300

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST--- 707
           +E+   +     +  + I V  D  L + FV D  R+ Q+ + +  NA+ F+++G     
Sbjct: 301 HEIVMLLQPTARDKGLTILVDYDLFLPTQFVGDPGRIRQVLTNLAGNAVKFTNEGHVTLR 360

Query: 708 VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
           V   +  + G       +++ G  IP +    VF  F  V +    +  G GLGL+I   
Sbjct: 361 VTGISNPEEGTCAVHCMIEDTGIGIPVEKIDHVFGEFNQVEDERNRKFEGTGLGLAISRR 420

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            I L  G + + S +   +    RIP 
Sbjct: 421 LIELMKGEIWVESDEGKGSCFGFRIPL 447



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 5/145 (3%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            K  T   +L H+ +         A FD +  L   N +++ L++  L   A   S   +
Sbjct: 77  EKIETAERRLWHSIQAFQ---DGFAFFDADSRLIGANTAYLNLFD-GLEEAAPGISYMRI 132

Query: 356 LEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L+ L     +   ++   +W+  +   + S         + + + L +I      G  + 
Sbjct: 133 LQILTDEGLVNTGEMKPDSWRAMMSERWLSMSPEPVVIQMWDDRYLRLIDQRGHGGDVVS 192

Query: 415 MFENLTVQVDLETKYNTLVKVQGET 439
           +  ++T  V+ E +  +  +     
Sbjct: 193 LALDITTSVNYEEELRSARERAEAA 217



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 64/180 (35%), Gaps = 22/180 (12%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--- 209
           +    R  G  A      +    +E+A    +  K+ + +S      ++ +  +WH    
Sbjct: 33  LSAANRKLGRHALALTKQIGETQAEVATVRDENAKVKSDLSQANEKIETAERRLWHSIQA 92

Query: 210 --------DQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEE-----IKKRMISS 255
                   D    ++ AN +Y    +  E      +     ++  +E      + +  S 
Sbjct: 93  FQDGFAFFDADSRLIGANTAYLNLFDGLEEAAPGISYMRILQILTDEGLVNTGEMKPDSW 152

Query: 256 SALEKNFCETVS----TLEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYE 310
            A+      ++S     ++  +++  +++      G+   +A+D++  +   ++L    E
Sbjct: 153 RAMMSERWLSMSPEPVVIQMWDDRYLRLIDQRGHGGDVVSLALDITTSVNYEEELRSARE 212


>gi|150392115|ref|YP_001322164.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951977|gb|ABR50505.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 784

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/521 (18%), Positives = 208/521 (39%), Gaps = 43/521 (8%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS--------FVELWEIDLAF 345
           DV+++    + L  + +    L      F+    L F N +        F+E+ E     
Sbjct: 248 DVTEKNKALEALKESEKKFKTL------FNNANDLIFLNHAEDPSSSGQFIEVNEAACKR 301

Query: 346 LATNPSNDELLE----FLRSANKLPEQLNWKTW-KENIFSVYKSSETHKDTWHLPNGQTL 400
           L    + +ELLE     +       E   ++    +N  + ++++   K  + +P    L
Sbjct: 302 LGY--TREELLEKTPSHITVDKAEGELAGYRKEIYKNGCATFETTLISKRGYEIPVEVNL 359

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           H           + +  ++T +  +E       +   + +D L E V +   +  I  SN
Sbjct: 360 H-TFKLFETQVELSIVRDITERKQIEVSLIKSKEKYRKLMDFLPESVLIIDKE-IILFSN 417

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----ERKSLQG 516
                    +         + +       + +  D  +    I  + +     E + ++ 
Sbjct: 418 ATATKFLGFDTFNDMINRPLLDFIY----WEDYDDMVEWINKIQRNKNSKPLVEIRFIKK 473

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              +   +++E  +       TM+   ++T+   A++ L    E   K D++K  F  ++
Sbjct: 474 DGSIAYGNIVETKVSFNDQESTMMIIRDITEQKEAKKLL----EETIKYDKLKTEFFVNI 529

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQS------QYVEYISASSTILLNLVNDILDL 630
           ++ELR+PL  I G   LL+         K+       + ++ +  +   LL LVN+I+D+
Sbjct: 530 AHELRTPLNVIFGALQLLELDFKQDEIEKKEALLGVDKRIKSMKQNCYRLLRLVNNIIDI 589

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
             +++G  +L    + + +++  +  S++  M    I ++  +  +      D  ++ +I
Sbjct: 590 TKIESGYYQLELQNVDIVNVVENITMSVSEYMEIRGINLQFDTQVESKLIACDPDKMERI 649

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
              +L+NA+ F+  G  + +       + + S+++ G  IPED    +F RF        
Sbjct: 650 MLNLLANAIKFTESGGQIKVNMYEKEENMMISIQDTGIGIPEDRINVIFERFSQVDRSLT 709

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               G G+GLS+V+S + L GG +++ S     +     +P
Sbjct: 710 RSHEGSGIGLSLVKSLVELQGGQITVKSKIGQGSEFIIALP 750



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 85/247 (34%), Gaps = 23/247 (9%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFL 359
           V +Q      +      A  I + +  +   N + VE++E+     L            L
Sbjct: 7   VKEQDLDYKILFEKSPDASLIIEGD-RIIRCNDAAVEMFELLSKDQLIGKKVYG-----L 60

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH------LPNGQTLHVIVTSNPRGGTI 413
               +L   L+ K  KE +    ++  +  +  H      L   + + V++  N +    
Sbjct: 61  FPKRQLDGSLSIKKAKELVRQAEENEVSKFEWTHSRRCGTLFYVEIVMVVIPINGKKVIN 120

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEEN 472
               ++T ++       T   +  +  +     + +   D G I  +NPA  + +  ++ 
Sbjct: 121 VSLRDITEKIKARILLKTNEDIYQDMFEKNHANMLLADGDTGEIVDANPAACAFYGYDKE 180

Query: 473 R--------LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           +        LS G+H            N+   +     + +    + ++  G++   +  
Sbjct: 181 QFITMNVTDLSIGSHHEVFNRIEDVKCNKGKHYYFKDQLASGEIKDVEAYSGSIN-KNGR 239

Query: 525 VLEYSII 531
            L YSII
Sbjct: 240 ELVYSII 246


>gi|307824939|ref|ZP_07655161.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307733986|gb|EFO04841.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 2035

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 136/819 (16%), Positives = 286/819 (34%), Gaps = 103/819 (12%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
            I +R  +   + +    L+E           +   + +   W   DE   I       +D
Sbjct: 1000 ISERKQMEDALRKNRQILTEAQRIAHVGSWEMDHVDNVL-SWS--DEIFRIF-----EVD 1051

Query: 105  IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA 164
              Q      +F N +  +    + +A  +  K  + +++         +  +GRV     
Sbjct: 1052 PEQFGATYEAFLNAVHPYDRAAVERAYTESLKSREPYEI-----EHRLLMADGRVKYVLE 1106

Query: 165  FL--------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH--RDQAGD 214
                      + L+  G   ++ E      +L +     + + +++          + G 
Sbjct: 1107 RCETAYADDGKPLNSLGTVQDITERKRMEAELISQTDFQQTILNAVADAGMQVMMIEEGR 1166

Query: 215  ILWA-NI--SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE- 270
            I+   N   +Y+     E I    A+     +   + + R+I             ++ E 
Sbjct: 1167 IIHVGNRKLAYEFGFTDEDIDTHPALA---DIIHPDDRDRIIDYHVRRMAGEAVSASYEL 1223

Query: 271  -----HGNNKSYK----IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA- 320
                 +G  + Y+    IV   +      +  D+S+   +  +L    +    +  A+  
Sbjct: 1224 GLVTRNGERREYETSVAIVPGTDPVRVITVGKDISERKRMETELLSQADFQKTIINAVCD 1283

Query: 321  ------IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
                  + +  R + F N+     +      +   PS  + +     A  +   ++ +  
Sbjct: 1284 VGMQLIVIENGRMIHFGNQLLARKFGFTDEDIDGYPSFIDFVHPDDRARVIGYHVS-RMK 1342

Query: 375  KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET------- 427
             E   + Y+      +        ++ V+  ++P    I +F ++T +  +E        
Sbjct: 1343 GEAAPNNYELGLVAGNGERREYETSVAVVPDTDP-VRLIAIFRDITERKRMEEALANREQ 1401

Query: 428  ------------------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
                              +     +     ID L     +   D R  + N A  +    
Sbjct: 1402 ELCALNASLELRVLERTEELRQQTRYLRTMIDTLPMFAWLKDTDSRFLVVNQALAAACSH 1461

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLE 527
              + L   + +        R + E+   D    + T    +RK+++       D    +E
Sbjct: 1462 NVDELVGKSDLD----VWPREHAETYRADDAEVMATG---QRKAVEEPFVDARDGAIWVE 1514

Query: 528  YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                P+ +       T+    ++++    E A         +   +++ F+  +S+ELR+
Sbjct: 1515 TFKAPVVDEDGRVLGTVGVSRDISERKAVEAAREAALVEAERLARLRSEFMARMSHELRT 1574

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL  I+G++ +L       LN +Q   V  +  S   LL+L+NDILD A ++AG  +L+ 
Sbjct: 1575 PLNGILGYSQILLGE--NRLNERQHVMVNVMQQSGEHLLSLINDILDFAKIEAGKQELSL 1632

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
            S I L   L+ +   ++ K  +  +         +     AD  RL Q+   +LSNA+ +
Sbjct: 1633 SDIHLPSFLHNLADIVSVKAEQKQLAFICDIAAAVPEGIRADDMRLKQVLLNLLSNAVKY 1692

Query: 702  SSKGSTVILKAA-----------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RG 749
            S +G  + L+              + G   F ++++G  I     +S+F  F   A  + 
Sbjct: 1693 SEQG-QISLRVTVLKKPFSEGAPVELGRLRFEIQDSGIGIEAGQLESIFKPFEQAADIQY 1751

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               G GLGL I    + L G  + +SS     +T    +
Sbjct: 1752 SGGGTGLGLVISRELVRLMGSEIFVSSRVGEGSTFWFDL 1790



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/561 (12%), Positives = 172/561 (30%), Gaps = 84/561 (14%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHS---LLTENNCLTIVWDGKDETPEIIGQLHQ 101
            + +R ++   + ++   L E             ++ +     +VW   DE   I      
Sbjct: 753  VTERKAIENALQDSEQMLQEAQRIAHVGSWDVDMVNDK----LVWS--DEIFRIW----- 801

Query: 102  RIDIPQTDTDLLSFENWLKFHHYIKLSKA-----TEKLRKEGQSFDLVAETQNDCAIK-- 154
             ID  +   D ++F   +      ++S+A       +   E +   L  + +    ++  
Sbjct: 802  EIDKTKFKADFVAFLETVHPEDRDRVSQAYNEAVINRSLYEVEHRLLFPDGRVKHVLERG 861

Query: 155  -----IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
                  +G+       +R +      +E        K +   +++     D +   V   
Sbjct: 862  EPQYDAQGKP------VRFIGTSLDITE-------RKAIEKQLALLNYALDHVKDTVLLT 908

Query: 210  DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM-----ISSSALEKNFCE 264
             +     + N   K+   T G  + + +G          ++           A      E
Sbjct: 909  GEDAHFYYVN---KEACTTLGYSYDEMLGLGVPNIDPVYQQDHWPDHWRDLKANGSLTFE 965

Query: 265  TVSTLEHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HN 314
            +    + G  + + +                 +A D+S+   + D L    +IL      
Sbjct: 966  SRHRTKDG--RIFPVEINANYFEFDGQGYNLALARDISERKQMEDALRKNRQILTEAQRI 1023

Query: 315  LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
              V     D    +   +     ++E+D        + +  L  +          +    
Sbjct: 1024 AHVGSWEMDHVDNVLSWSDEIFRIFEVDPEQFGA--TYEAFLNAVH-------PYDRAAV 1074

Query: 375  KENIFSVYKSSETHKDTWHL--PNGQTLHVIV---TSNPRGG----TIWMFENLTVQVDL 425
            +       KS E ++    L   +G+  +V+    T+    G    ++   +++T +  +
Sbjct: 1075 ERAYTESLKSREPYEIEHRLLMADGRVKYVLERCETAYADDGKPLNSLGTVQDITERKRM 1134

Query: 426  ETKYNTLVKVQGETIDHLSEG---VAVFGPDGRIKLS-NPAFRSLWKTEENRLSPGTHIR 481
            E +  +    Q   ++ +++    V +   +GRI    N      +   +  +     + 
Sbjct: 1135 EAELISQTDFQQTILNAVADAGMQVMMI-EEGRIIHVGNRKLAYEFGFTDEDIDTHPALA 1193

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTML 540
            +I     R           A    S   E   +    E   +     +I+P  +  + + 
Sbjct: 1194 DIIHPDDRDRIIDYHVRRMAGEAVSASYELGLVTRNGER-REYETSVAIVPGTDPVRVIT 1252

Query: 541  TFVNVTDSVRAERALTEKNEA 561
               ++++  R E  L  + + 
Sbjct: 1253 VGKDISERKRMETELLSQADF 1273



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 130/419 (31%), Gaps = 65/419 (15%)

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
           LT  N   +      E    IG L    D+   +            H +  L +  E+  
Sbjct: 420 LTAENLRPLAIQAPGE----IGDLAWAFDVMIGELH----------HSFDSLEQRVEERT 465

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
            E ++   V E QN   ++ +    G+       S   +  E+ E  L    L      F
Sbjct: 466 AELRALHQVLEEQN-LQLEEQSFELGA-------SNSSLLEEIGERKLIEDLLRLREQEF 517

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG-ESRKLFKEEIKKR--- 251
           + L ++    +   D+ G I + N         +    + AIG +S +L+ +        
Sbjct: 518 RSLAENSPDNIARYDRDGRIKYMNSQLHAALGLDEATARAAIGKKSTELYPDGDFDAYEQ 577

Query: 252 -MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS-------FGEAGIAIDVSKEITVND 303
            + S     +     V   + G+   Y  VR++          G   +  D+++   +  
Sbjct: 578 TIKSVIESGQVSELEVVLPDTGDGIRYHWVRMVAEREPFGEVIGVLALGRDITETRALQQ 637

Query: 304 QLTHT-------YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           + T         +  + +             + F +    EL+ ++          +E++
Sbjct: 638 RQTQYFAMAPGLFSTIEHRADGCYA------MPFVSDGVRELFGLEP---------EEVM 682

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSN----PRG 410
             + +        + +          +        + +  P+     +   S     P G
Sbjct: 683 RDIGTLVARAHPDDIEMTFRKTEESERDLTPFHVEYRIIHPSNGLRWIECNSMPQRLPDG 742

Query: 411 GTIWM--FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSL 466
           GT WM  + ++T +  +E       ++  E       G       + ++  S+  FR  
Sbjct: 743 GTRWMGFYHDVTERKAIENALQDSEQMLQEAQRIAHVGSWDVDMVNDKLVWSDEIFRIW 801



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           + E +  +  +E       +      ++  + +A +  DGRIK  N    +    +E
Sbjct: 496 LLEEIGERKLIEDLLRLREQEFRSLAENSPDNIARYDRDGRIKYMNSQLHAALGLDE 552


>gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 559

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 10/259 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+        +  +  + L    E    A + K  F+  +S+E+R+P+  +IG  DLL  
Sbjct: 137 QSAQLHQKTQELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMD 196

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S+   L  +Q +Y   I  S+  L+N++NDILD + +++G M+L      L   + EV  
Sbjct: 197 SE---LQDEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFG 253

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
             + +  + N+ +    + ++ S V  D  RL Q+   ++SNA+ F+++G   +++  A+
Sbjct: 254 LFSGEASKKNLELTYYIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAK 313

Query: 715 DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
              +     F+VK+ G  I       +F  F         +  G GLGL+I +S + + G
Sbjct: 314 AEENRLTLEFTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMG 373

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S +    T    I
Sbjct: 374 GEIEVDSKEGEGATFVFTI 392


>gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
 gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
          Length = 2783

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/405 (22%), Positives = 177/405 (43%), Gaps = 22/405 (5%)

Query: 397  GQTLHVIVTSNPRGGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            G    VI  +           +L ++   L  +              ++EGV V     +
Sbjct: 2380 GTIASVIAAAVYNAQLYGFVNDLALRNAVLLEEQRAESSKSAAIFRSMTEGVIVLDTTNQ 2439

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            I L NPA   +     + L  G  + ++A   +   +   G  ++  I+      R++ Q
Sbjct: 2440 ITLFNPAAEQMLDIAAD-LVLGQPLAHLAEVGNDDISRRRGQTIYQGILHGLRRMRET-Q 2497

Query: 516  GTLELLSD-----SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            G      D      V+  +I P+    T    V V   +  E           +AD+ K 
Sbjct: 2498 GIFSTSIDLTDPTQVIAVNIAPVRGLDTDYGTVAVLRDITRE----------IEADKEKR 2547

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+  VS+ELR+PLT I G+ D+L  +   +L   Q  Y+  I  ++  L  L+ DIL+ 
Sbjct: 2548 QFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQLSYLNIIKNNTNRLRALIEDILEF 2607

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
            +  D+   KL ++ + +  ++ EV QS+  +     +++++ +   L   +AD++R+ QI
Sbjct: 2608 SRPDSKK-KLTFTQVDIPTVIEEVVQSLRLEYERKGMKVRIDTSPSLPPVIADQKRVSQI 2666

Query: 691  FSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-- 747
               + SNA+ ++ +G ++ ++A  +        V++ G  +  +  K +F  F    +  
Sbjct: 2667 IFNLFSNAVKYTYEGGSITVRAFVNRANMMQIEVEDTGVGMSPEQLKKLFRPFYRADNPL 2726

Query: 748  RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            R    G GLGLSI +  + +HGG + ++S     +T +  IP ++
Sbjct: 2727 RDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFSFAIPLQQ 2771



 Score = 44.5 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 48/429 (11%), Positives = 131/429 (30%), Gaps = 49/429 (11%)

Query: 14   IEICTLFSCKIAVFGTIAGMLLTTIIP----IILLIRQRNSLAKKVNETYSFLSEICDQL 69
            + + T+ + + A +   A  ++ TI       I   R  + ++    +  + + E   +L
Sbjct: 2162 VGVLTVHNIEPAAYDEEALAVVFTIASQASQAIQNARLFDQISNLAADLDARVRERTAEL 2221

Query: 70   SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSK 129
             +   LL+E           +    I  +L  ++D+       L+          +++ +
Sbjct: 2222 EQATQLLSEEKERL------EAVNRIALELTTQLDLDLIIQRALAL-----ISDSLQVDR 2270

Query: 130  ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189
             +  LR                       V       R +       + A   L+     
Sbjct: 2271 GSLMLRD----------------------VESGALICRAVLHGRGQVQAANVPLRFA--- 2305

Query: 190  NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
            N+              V  RD   D  W   S + +T           G++         
Sbjct: 2306 NNTEGLAGWIMQHQEPVNIRDVTHDPRWVQESGRADTVRSVAGVPLQTGDTAIGVIILSS 2365

Query: 250  KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
             +    S  + N   T++++      + ++   +N         +         + + + 
Sbjct: 2366 PQPNYFSDSQMNLLGTIASVIAAAVYNAQLYGFVNDLAL----RNAVLLEEQRAESSKSA 2421

Query: 310  EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
             I  ++T  + + D    +   N +  ++ +I    +   P            ++   Q 
Sbjct: 2422 AIFRSMTEGVIVLDTTNQITLFNPAAEQMLDIAADLVLGQPLAHLAEVGNDDISRRRGQT 2481

Query: 370  NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVD 424
             ++     +  + ++      +  L +   +  +  +  RG     GT+ +  ++T +++
Sbjct: 2482 IYQGILHGLRRMRETQGIFSTSIDLTDPTQVIAVNIAPVRGLDTDYGTVAVLRDITREIE 2541

Query: 425  LETKYNTLV 433
             + +    +
Sbjct: 2542 ADKEKRQFI 2550


>gi|303247117|ref|ZP_07333392.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491543|gb|EFL51428.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 997

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 127/696 (18%), Positives = 238/696 (34%), Gaps = 96/696 (13%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
            +     +R L+ + +   L+E+  + + L  +     +L D          + G ++ A
Sbjct: 183 AALGLLLVRRLARNQLVMRLSESESRYQSLFENSHAVMLLIDP---------EDGAVVDA 233

Query: 219 NI-SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
           N  +      T   + QK + +   L    ++  M+++             L  G  +  
Sbjct: 234 NPSACAYYGWTREEIRQKRMRDINTLPPAAVRAAMVNARNRRVTTFSFRHRLADGRIREV 293

Query: 278 KI----VRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQ 329
           ++    +R++       + IDV+  +    +L        +++ +    + +        
Sbjct: 294 EVNAGPIRLMGRELLYSVVIDVTDRLEAQRRLIESEKRFRQLVEHAPSGVFVQ-TGGLFA 352

Query: 330 FHNRSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS---VYKSS 385
           + N     L ++D    L  +P    +LE +          +    +  +     ++++ 
Sbjct: 353 YVNPHARSLLDVDTPGALVGSP----VLERIA-------PEDRAMVRARMHETDVLHRAV 401

Query: 386 ETHKDTWHLPNGQTLHVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
              ++     +G      V + P     + G++  F ++T +   E +            
Sbjct: 402 PMIEENMLRMDGGAFLAEVAAVPVEWDGKEGSLVFFHDITERKRDEERLRLSEARMQSLF 461

Query: 441 -----------DHLSEGV------------AVF---GPDGRIKLSNPAFRSLWKTEENRL 474
                      + L   V             +F   G DGR+        +         
Sbjct: 462 AVTQMEAAGLDELLVHAVEEARRLTGSLFGCMFVEDGADGRLS---RVAEACDGQCLRHW 518

Query: 475 SPGTHIRNIAATCSRYY-----------NESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             G   R +    S                    +     I S  +    L    +    
Sbjct: 519 PGGPFERQVPEQWSEALTGRRPIVLDGGPGGQDGETLCVPIVSDKEVAAMLVVAGKRKPY 578

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
              +  I  L     M     +    R   AL    EA  +A  +K+ F+ ++S+ELR+P
Sbjct: 579 DASDIRITSL----FMDAVWRMVARRRDAAALLSAKEAAERASRVKSEFLANMSHELRTP 634

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I G T LL  +   SL  +Q +YV     S   L  L+ DILDL+ V++G + L   
Sbjct: 635 LNGIQGMTQLLAAT---SLTPEQREYVRAALVSCRRLTRLLGDILDLSRVESGKLTLLPE 691

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L DLL+ V  +      E  I     ++ G       D  R+ QI   ++ NA+ F+
Sbjct: 692 PFRLADLLSAVAAAFMPACLEAGIDWGTEVAPGVPEILFGDEGRVRQILYNLVGNAVKFT 751

Query: 703 SKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
             G  V L+           G   F+V + G  IP    + +F  F         + +G 
Sbjct: 752 KTGG-VRLEVWAGPVDASGCGSLFFAVTDTGVGIPAPELERIFEAFHQVERSFSRRFQGA 810

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV   ++L  G +S+ S     T   C +P 
Sbjct: 811 GLGLAIVRRLLDLMQGTISVESEVGRGTRCVCALPL 846


>gi|299133494|ref|ZP_07026688.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591330|gb|EFI51531.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 600

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 164/375 (43%), Gaps = 20/375 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L +       ++S+ +A    +G +   +PA   L       L        +  
Sbjct: 203 ERRYRLLAR-------NISDVIARHRANGDLNFISPAAEVLLGVPGPTLLLHGLFDRVHV 255

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-------- 537
                Y  +          +S   E +  + +      + +E    PL   Q        
Sbjct: 256 ADRPRYLTALSDAARGGEASSV--EFRVRRESPHGPEFAWVEMRCRPLEPTQDQASGAFE 313

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    +VT+    E+AL    +   +A   K+ F+  +S+ELR+PL  IIGF++++   
Sbjct: 314 VVSVMRDVTERKMQEQALEAARQEAEQAGASKSRFLATMSHELRTPLNAIIGFSEMIARE 373

Query: 598 KLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               L++ ++ +Y   I+ S   LL++VN ILD++ +++G  +L        + L+    
Sbjct: 374 DEMKLDAARRREYAGLINESGLHLLSVVNGILDMSKMESGKFELVSEPFAPREALSSCCN 433

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  K  +N I +       L     D +   QI   +LSNA+ F+ +G +V + A  + 
Sbjct: 434 LMVLKARDNGIDLTTRMPSDLPQMTGDARAFKQILLNLLSNAIKFTGEGGSVTVSAQVEG 493

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
            + +  V + G  I +D    + N F        G+R G GLGLSIV+S ++LHGG + +
Sbjct: 494 RELLLRVADTGIGIGKDDLARLGNPFFQAGASYQGRREGTGLGLSIVKSLVSLHGGEMKV 553

Query: 775 SSSDEGVTTINCRIP 789
            S  +  TTI+ R+P
Sbjct: 554 ESELDRGTTISVRLP 568


>gi|288962258|ref|YP_003452553.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288914524|dbj|BAI76009.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1135

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 184/484 (38%), Gaps = 41/484 (8%)

Query: 338 LWEIDLAF--------LATNPSNDELLEFLRSANK-LPEQLNWKTWKENIFSVYKSSETH 388
            WE+D           L  + +ND L   LR  +  L E  +   W ++  ++ +     
Sbjct: 338 FWEMDADLRFSDFAGPLVPHIANDTLPTGLRREDVALREPGDAAKWDQHRQTMERREPFR 397

Query: 389 KDTWHLPNGQTLHV-IVTSNPRGGTIWMFE-------NLTVQVDLETKYNTLVKVQGETI 440
              + +     L    V+  P  G    F+       ++T +     +  +         
Sbjct: 398 NFRYRVMTAAGLRYFSVSGRPIFGQDGGFQGYRGSATDITERELAANRLASSEARYRAMF 457

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR----NIAATCSRYYNESDG 496
           + + + +      G +   N A   L+      +  G   R     + A           
Sbjct: 458 EAVGQPIVTIDEHGTVDAFNRAAERLFGYRAAEVVGGPMTRLMPSAVGAVHDGLLATYRE 517

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD---SVRAER 553
            D   +I      E   L G  +   +  LE ++              + D       E 
Sbjct: 518 GDGEGSIPRVGMRE---LTGRRKDGGEFPLEATLAGWREGDRRYVTGALRDVTVQREIEA 574

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L    EA  +A+  K  F+  +S+E+R+P+  ++G   L++     +LN +Q Q ++  
Sbjct: 575 SLRRAKEAADQANRAKGEFLATMSHEIRTPMNGVLGALALVE---GPNLNDEQRQLLDVA 631

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + S   LL +++DILDL+ ++AG  ++      L  +L +    +        + +    
Sbjct: 632 NRSGNALLQIIDDILDLSKLEAGKAEVEPVDFELRAVLRDSIDLLEPAACGRGLFLTQEV 691

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-------IFSVKN 725
           +  +     AD +R+ Q+   ++ NA+ F+++G  V ++   +            F V +
Sbjct: 692 EPAVPDHVRADLRRIRQVLVNLVGNALKFTNRGG-VAVRVGLEGDAVADGSFLLRFEVAD 750

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPE++  ++F RF        RR  G GLGL+I    + L GG + ++S++   +T
Sbjct: 751 TGIGIPEEVQPTLFRRFTQADSSTTRRFGGTGLGLAISRELVTLMGGTIGVASAEGKGST 810

Query: 784 INCR 787
               
Sbjct: 811 FWFT 814



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 82/295 (27%), Gaps = 43/295 (14%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
              + A  +   ++L++  + F+   ++     W  D    + +++ +            
Sbjct: 306 ATRQTARLSTLARQLASSEARFRDQAETASDWFWEMDAD--LRFSDFAGPLVPHIANDTL 363

Query: 234 QKAIGES----RKLFKEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIVRVLNSFGE 288
              +       R+        +   +    + F       +     + + +        +
Sbjct: 364 PTGLRREDVALREPGDAAKWDQHRQTMERREPFRNFRYRVMTAAGLRYFSVSGRPIFGQD 423

Query: 289 AGI------AIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
            G       A D+++     ++L         +   +   I   D++  +   NR+   L
Sbjct: 424 GGFQGYRGSATDITERELAANRLASSEARYRAMFEAVGQPIVTIDEHGTVDAFNRAAERL 483

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE---------THK 389
           +    A +   P              +P  +      + + + Y+  +           +
Sbjct: 484 FGYRAAEVVGGP----------MTRLMPSAVG--AVHDGLLATYREGDGEGSIPRVGMRE 531

Query: 390 DTWHLPNGQTLHVIVT-----SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            T    +G    +  T        R        ++TVQ ++E       +   + 
Sbjct: 532 LTGRRKDGGEFPLEATLAGWREGDRRYVTGALRDVTVQREIEASLRRAKEAADQA 586



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 83/301 (27%), Gaps = 29/301 (9%)

Query: 31  AGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYH-SLLTENNCLTIVWDGK 89
           A ++   ++      RQ   L+    +  S  +   DQ           +  L       
Sbjct: 297 ACLIGLALLAT----RQTARLSTLARQLASSEARFRDQAETASDWFWEMDADLRFSDFAG 352

Query: 90  DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL--RKEGQSFDLVAET 147
              P I         + + D  L       +     K  +  + +  R+  ++F     T
Sbjct: 353 PLVPHIANDTLP-TGLRREDVALR------EPGDAAKWDQHRQTMERREPFRNFRYRVMT 405

Query: 148 QND-CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
                   + GR              G  +++ E  L   +L++  + ++ +F+++   +
Sbjct: 406 AAGLRYFSVSGRPIFGQDGG-FQGYRGSATDITERELAANRLASSEARYRAMFEAVGQPI 464

Query: 207 WHRDQAGDILWANISYKKNTETEGIV---------FQKAIGESRKLFKEEIKKRMISSSA 257
              D+ G +   N + ++                    A+G          ++     S 
Sbjct: 465 VTIDEHGTVDAFNRAAERLFGYRAAEVVGGPMTRLMPSAVGAVHDGLLATYREGDGEGSI 524

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILH 313
                 E     + G     +        G+     G   DV+ +  +   L    E   
Sbjct: 525 PRVGMRELTGRRKDGGEFPLEATLAGWREGDRRYVTGALRDVTVQREIEASLRRAKEAAD 584

Query: 314 N 314
            
Sbjct: 585 Q 585


>gi|86160736|ref|YP_467521.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777247|gb|ABC84084.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 461

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 123/242 (50%), Gaps = 4/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +    L++ D +K++F+  +S+ELR+PLT++IG+++++     G L ++Q +Y+  
Sbjct: 203 QKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGI 262

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      LL L+  ILD++ ++AG ++L  S +    L+ +   ++     +  +++   
Sbjct: 263 IMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKKGLKVSCD 322

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIP 731
               L    ADR +L Q    + SNA+ F+  G ++ + A           V ++G  IP
Sbjct: 323 -PSPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVNAEVLQGERLAIHVVDSGIGIP 381

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+    VF+ F        R   G GLGL+IV+SF+  HGG + + S+    +     +P
Sbjct: 382 EEHLAKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGSIFTVLLP 441

Query: 790 SK 791
            +
Sbjct: 442 IR 443


>gi|307152832|ref|YP_003888216.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306983060|gb|ADN14941.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1214

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 131/834 (15%), Positives = 268/834 (32%), Gaps = 125/834 (14%)

Query: 46   RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
            R R ++A  V +       +    ++Y +L           D +     I         +
Sbjct: 404  RVRITMALDVTQRKEAEMALQASEARYATLTELAPVGIFHTDSEGNCIYINQHWCAITGL 463

Query: 106  PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG--SC 163
               +     +   L      +++    +   +  +F L    QN       G+++     
Sbjct: 464  STAEAMGTGWLKALHSEDQQRVTATWIRAVAKNTAFYLEYRFQN-----PNGKITWVVGQ 518

Query: 164  AFLRILSLD------GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
            A  +I          G  ++++        LS     F+    +    +    + G +L 
Sbjct: 519  AIPQITPSGEVLGYIGTITDISTLKEAELALSQSEERFRQAVLNAPVPIAIHAEDGTVLQ 578

Query: 218  ANISYKKNTET---EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET--VSTLEHG 272
             + ++   T     +       I ++ +  +++I+  +     L +   E   + T ++G
Sbjct: 579  ISRAWSDITGYTLEDIPTVADWIEKAYRTNQQKIQANVERLYGLTEPIAEGEYIITTKNG 638

Query: 273  NNKSYKIVRVLNSFGEAG------IAIDVSKEITVNDQLTH------------------- 307
              + ++           G       A+DV++   V  QL                     
Sbjct: 639  VTRIWEFYSTGLGRLSDGRRTVISTALDVTERKKVELQLKQAKQNLEIRVAARTTELQQA 698

Query: 308  --------------------TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
                                  ++L      I   D    + F N+   +++        
Sbjct: 699  NEQLLQELSEKLQTQKILAEQAQLLDLAHDTILTRDLEGTILFWNQGAEKMYGFSSLEAV 758

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-- 405
               SN  L          PE  +    +      ++    H+      +G  + V     
Sbjct: 759  GQHSNVLL------NTVFPEPYSQILSQLFAQDYWEGELRHQKL----DGTEIIVASRWV 808

Query: 406  -SNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                + G     + +  ++T++   E              +    G+ +    GR+  +N
Sbjct: 809  LQRDKAGNPSKILEINNDITLRKRAEEALQDNEAKFRSLSESSPIGIFLTDTHGRVLYTN 868

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            P ++ +          GT    +     ++ +  D  ++ +  +T  + ++ S    +  
Sbjct: 869  PRYQEIVG--------GTAEEVLGEGWKQFIHPEDLENIVSEWLTHLEKQKNSFYPQVRY 920

Query: 521  LSD----SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                      +     +   +  LT    T     ER L          +++K  F+  V
Sbjct: 921  CHKNTEIRYTQVHTAAIFTERGQLTGFVGTVEDITERRLI---------EQMKKDFISVV 971

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+ELR PLT I G   LL      +   K  + ++  +  +  L+ LVNDILDL  +++G
Sbjct: 972  SHELRIPLTAIHGSLGLLAAGVYDNKPEKGKKMLQIAATQTERLVKLVNDILDLGRLESG 1031

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             + L      +  LL +  + +  K  EN I + V          AD   ++Q  + +LS
Sbjct: 1032 KLHLVIQPCEVAQLLEQAAELMRPKAAENQITLSVT--PIDVQVWADFDSIMQTLTNLLS 1089

Query: 697  NAMDFSSKGSTVILKAARDNGD--------------------FIFSVKNNGSSIPEDMCK 736
            NA+ FS   ST+ + A   +                       +F VK+ G  IP +  +
Sbjct: 1090 NAIKFSLPKSTISVNAELISSHDKIAIWQQKRPSLASLSVPYVLFQVKDQGRGIPRNQLE 1149

Query: 737  SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F +F          + G GLGL+I    I   GG +   S     ++    +
Sbjct: 1150 LIFEKFQQVDATDSRDKGGAGLGLAICRLIIEQQGGQIWAESVLGEGSSFYFTL 1203



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 71/486 (14%), Positives = 159/486 (32%), Gaps = 80/486 (16%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT------ 226
            + +E+ +     + L      F+         +    + G+IL  N ++ + +      
Sbjct: 280 NLENEIEDRKQLEQLLRESEERFRQAIYEAPLPILIHAEDGEILQINWAWSEISGYQPQE 339

Query: 227 -ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
             T     QK  G++ + F+  I++    +  + +   E       G    +        
Sbjct: 340 IPTLSAWVQKVYGDNYERFRNYIRQLFQLNQRVNEG--EHTLINRQGKTLIWDYYSAPLK 397

Query: 286 FGEAG------IAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSF 335
               G      +A+DV++       L  +      L     V I   D      + N+ +
Sbjct: 398 TLSDGRRVRITMALDVTQRKEAEMALQASEARYATLTELAPVGIFHTDSEGNCIYINQHW 457

Query: 336 VELWEIDLA------FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH- 388
             +  +  A      +L    S D             +Q    TW   I +V K++  + 
Sbjct: 458 CAITGLSTAEAMGTGWLKALHSED-------------QQRVTATW---IRAVAKNTAFYL 501

Query: 389 KDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           +  +  PNG+   V+  + P+        G I    +++   + E   +   +   + + 
Sbjct: 502 EYRFQNPNGKITWVVGQAIPQITPSGEVLGYIGTITDISTLKEAELALSQSEERFRQAVL 561

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI---------RNIAATCSRYYN 492
           +    +A+   DG +   + A+  +       +               + I A   R Y 
Sbjct: 562 NAPVPIAIHAEDGTVLQISRAWSDITGYTLEDIPTVADWIEKAYRTNQQKIQANVERLYG 621

Query: 493 ESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
            ++       IIT+ +   +  +     L  LSD         L          +VT+  
Sbjct: 622 LTEPIAEGEYIITTKNGVTRIWEFYSTGLGRLSDGRRTVISTAL----------DVTERK 671

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E  L +  + L      + + +Q  + +L      +   ++ L+T K+    ++Q+Q 
Sbjct: 672 KVELQLKQAKQNLEIRVAARTTELQQANEQL------LQELSEKLQTQKIL---AEQAQL 722

Query: 610 VEYISA 615
           ++    
Sbjct: 723 LDLAHD 728



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 69/208 (33%), Gaps = 20/208 (9%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           ++  K+ I + Y++ E  + T      +              I +   +  +  LE    
Sbjct: 239 YRQIKQEIKARYQAEEDLQQTNEQLEARIQQRTAQLTQL--NINLENEIEDRKQLEQLLR 296

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +   + I      + +   DG I   N A+  +   +         I  ++A   + 
Sbjct: 297 ESEERFRQAIYEAPLPILIHAEDGEILQINWAWSEISGYQP------QEIPTLSAWVQKV 350

Query: 491 YNESDGWDLFAAIITS-FDDERKSLQGTLELLSDS----VLEYSIIPLP---NAQTMLTF 542
           Y   D ++ F   I   F   ++  +G   L++      + +Y   PL    + + +   
Sbjct: 351 Y--GDNYERFRNYIRQLFQLNQRVNEGEHTLINRQGKTLIWDYYSAPLKTLSDGRRVRIT 408

Query: 543 V--NVTDSVRAERALTEKNEALRKADEI 568
           +  +VT    AE AL           E+
Sbjct: 409 MALDVTQRKEAEMALQASEARYATLTEL 436


>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 816

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 153/365 (41%), Gaps = 20/365 (5%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +     ID L + V    PDG     +  +       E+ L     I  +         E
Sbjct: 10  REWRNLIDALPQLVWAATPDGTCDYFSHQWTEYTGVPESELLGWRWIEVLHPDDREPTRE 69

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDS 548
                +        +   +   G          +   +P+ +++ +++       +++D 
Sbjct: 70  FWTDSVAGHHPYDVEYRVRRRDGVY-----GWFKTRGVPIRDSRGIISKWCGSCTDISDL 124

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            RAE ALT       +A+  K  F+ ++S+E+R+P+  +IG   LL  ++   L+ +Q +
Sbjct: 125 KRAEVALTRAKAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTE---LSVQQRE 181

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV  I  S+  L+ L+ND+LD + ++AG ++L      L D L +   S+A +     + 
Sbjct: 182 YVSIILHSADTLMRLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAHKGLE 241

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG---DFIFSV 723
           +      ++  + V D  RL QI + ++ NA+ F+ KG  V+ ++            F V
Sbjct: 242 LAYHVPVEIPDALVGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETTDTDVQLEFEV 301

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I ++  + VF  F        RR  G GLGL+I        GG + + S     
Sbjct: 302 RDTGIGISKNQQEKVFTAFGQADASTTRRYGGTGLGLTIAAQLAEKMGGKIKLESEPGVG 361

Query: 782 TTINC 786
           +T + 
Sbjct: 362 STFSF 366


>gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 929

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 167/379 (44%), Gaps = 12/379 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +  ++        +    ++HL + +     + R    + +  +L K ++     G 
Sbjct: 124 IAQRDQIQDALLNEKFLLQTLLEHLPDAIYFKDAESRFTRVSGSMATLLKVKDASEIVGK 183

Query: 479 HIRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +       +  Y++        +++   ++      G    +S +      +     
Sbjct: 184 SDADFFPKEFAAEAYSDEQWLLETGSMMIGKEEMPIWADGRQTWVSTTKGVLRDVEGNVI 243

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T     ++T    AE+ L    EA   A+  K+ F+ ++S+E+R+P+  IIG ++LL  
Sbjct: 244 GTFGISHDITRQKNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSELLLD 303

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S+   L  +Q  YV  +  S+  LL+++N+ILD + ++AG ++L++  I L DL+ E  +
Sbjct: 304 SE---LQHQQDVYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVETLR 360

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LK 711
           S+A + H   + +    D  +   V  D  R+ QI   ++ NA+ F+  G  V+    L+
Sbjct: 361 SLAARAHRKGLELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTEAGEIVVQVKSLE 420

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
            + D+ +  F V++ G  I +D  + +F+ F        R   G GLGL+I     +  G
Sbjct: 421 MSTDSVELHFEVRDTGIGIQQDRLQKIFDAFEQADASTTRQFGGTGLGLAIASRLASAMG 480

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +   S     +  + +I
Sbjct: 481 GMIWAESMLGQGSVFHFKI 499


>gi|192290456|ref|YP_001991061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192284205|gb|ACF00586.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 610

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 176/400 (44%), Gaps = 26/400 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G +W+       +++E +   L+        ++S+ ++    +G ++  +PA  +L  T 
Sbjct: 187 GAVWLARTNGALLNVEEERYRLLAR------NMSDVISRHNRNGAVRFISPAAENLLGTP 240

Query: 471 -----ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                E+ L    H+ +  A      + + G +  +       D  +  +G         
Sbjct: 241 VARLAEHGLFDRVHVADRPAYLKAMSDAARGRETGSVEFRIRRDVARDERGRPSAAEFVW 300

Query: 526 LEYSIIPLP------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +E    PL               + +    ++T+    E+AL +      +AD  K+ F+
Sbjct: 301 VEMRCRPLESNLTTTAASNAGETEVVAVMRDITERKIHEQALDQARAEADRADAAKSRFL 360

Query: 574 QHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
             +S+ELR+PL  IIGF+D+ L+   L     ++ +Y + I+ S   LL++VN ILD++ 
Sbjct: 361 ATMSHELRTPLNAIIGFSDMILQDDVLMLGPERRKEYAQLINDSGQHLLSVVNGILDMSK 420

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +++G  ++          L      +A K  ++ I +   +   L   V D +   QI  
Sbjct: 421 MESGSFEIVPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPENLPEVVGDPRAFKQILL 480

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
            ++SNA+ F+ +G TV + AA +    +  V + G  I E+  K + + F         +
Sbjct: 481 NLVSNAIKFTERGGTVTVSAAVEGTRLVLRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRR 540

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGLSIV+S + +HGG + + S  +  TT+   +P 
Sbjct: 541 HEGTGLGLSIVKSLVRMHGGEIEVQSQIDCGTTVTVSLPL 580


>gi|163939391|ref|YP_001644275.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|229132383|ref|ZP_04261237.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
 gi|229166419|ref|ZP_04294175.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|163861588|gb|ABY42647.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|228616993|gb|EEK74062.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|228651089|gb|EEL07070.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
          Length = 591

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 167/367 (45%), Gaps = 29/367 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP      +  +        +  I    
Sbjct: 249 ALQQEKEQLASILSSMADGVVTLNQEGEVVVINPPAEHFLQVWQEE----KEVELIKKL- 303

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 304 -----PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++ V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N    F V+++G
Sbjct: 463 QLTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + IPE+    +F+RF        R    G GLGL+I ++ +  H G + +SS     TT 
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKIGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTTF 582

Query: 785 NCRIPSK 791
           +  +P++
Sbjct: 583 SVYLPNR 589


>gi|253701838|ref|YP_003023027.1| PAS sensor protein [Geobacter sp. M21]
 gi|251776688|gb|ACT19269.1| PAS sensor protein [Geobacter sp. M21]
          Length = 1323

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/418 (21%), Positives = 167/418 (39%), Gaps = 49/418 (11%)

Query: 417  ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            + +  +   E       +   + ID L +   V    G + + N A       +   +  
Sbjct: 679  QEIMQRRIAEQALRDSERRLADIIDFLPDPTFVVNAQGAVLIWNRAAEEFTGAKAEDMLG 738

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSII---- 531
                      C   +       L   ++T +  E+ K L   + +  D ++  S +    
Sbjct: 739  KDS-----DECGVPFYGMRRPLLLHMVLTPWRAEQIKPLYVRVVVEGDKIIGESPVRSVS 793

Query: 532  -----------PLPNAQT---------------------MLTFVNVTDSVRAER--ALTE 557
                       PL +++                      +    +  + +  ER   L  
Sbjct: 794  RPHAYTMGMAAPLYDSEGKVIAVIESVRDITELKEGEEELKRHRDHLEELVRERTMELLV 853

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              E    A++ K++F+  +S+ELR+PL  I+G+  +LK     +L   Q Q +E +    
Sbjct: 854  AKERAEVANQAKSAFLSSMSHELRTPLNAILGYAQILKRQ--DNLTDTQRQQLEIVRGCG 911

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              LL+L+ND+LD+  ++A  M++   +  L+ LL +V      K  E ++  +      L
Sbjct: 912  EHLLSLINDVLDMGKIEAQKMEIEALSFDLSALLGQVFSIAKVKADEKDLGFRYEELTSL 971

Query: 678  G-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMC 735
              +   D+++L Q+   +LSNA+ ++ +G  TV +     +G F+  + + G  I  D  
Sbjct: 972  PRAVRGDQRKLKQVLLNLLSNAVKYTRRGRVTVRVDYELSSGTFVCEITDTGIGIAPDKL 1031

Query: 736  KSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F  FV  A  GQ R G GLGLSI    + L  G V++ S     +T    +P  E
Sbjct: 1032 NIIFEPFVQLADAGQVREGTGLGLSITRRLVTLMQGEVAVESEPGFGSTFRVELPLPE 1089


>gi|255015126|ref|ZP_05287252.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 512

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 107/522 (20%), Positives = 213/522 (40%), Gaps = 63/522 (12%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-----LATNPSNDE-LLEFLRSANK 364
           +   L V I ++D+   L   NR+   L+ I         L  NP+  E  +  L+    
Sbjct: 6   LFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGINLFENPNFPEDKIARLKQGEM 65

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           +    N++ +     + Y + +  K+  +L  + + + +   +    G + MF + T + 
Sbjct: 66  VVFDCNYE-FDNIQTNEYYNIDPKKEGINLRLSIKCVPLKGEAEDICGYVLMFTDETEEY 124

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
               K   L       +      +  +                   + +++     +R +
Sbjct: 125 QKSEKVEELFTKLKTVMRCSDSLLWEYD-----------------VKTDKMHIDLDLRVL 167

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII--PLPNAQTMLT 541
                   +       F  I+   D ER  +QG  +++   + EYSI    L   Q +  
Sbjct: 168 GNKSRLRASNLTTKKDFCEIVYPEDRERVLVQGFEKIVMGEIGEYSIQYRQLFEGQYVWV 227

Query: 542 F---------------------VNVTDSVRAERALTEKNE----------ALRKADEIKN 570
                                 +++TD +  +  L                 ++A+ +K+
Sbjct: 228 RAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEANRLKS 287

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+PL  I+GF ++L  +K      ++  YV+ I  +S +LL L+ DILD 
Sbjct: 288 MFLANMSHEIRTPLNAIVGFANILAETKEIEE-EEREFYVDIIDKNSELLLQLIEDILDF 346

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + ++AG   +        ++  E     A K+   N+R       +  +  +D +R++Q+
Sbjct: 347 SKIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQPVTVFSDPKRVVQV 405

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            S  L+NA+ F+S+G  + L       +   SV + G  I E+ C+++F+RFV       
Sbjct: 406 ISNFLTNAIKFTSEGE-IKLAYKVSKDEIRVSVSDTGMGISEEDCRTIFDRFVKL--NAC 462

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           ++G GLGL+I ++ I   GG + + S+    +T    +P KE
Sbjct: 463 KQGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 504


>gi|158339144|ref|YP_001520321.1| sensory transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309385|gb|ABW31002.1| sensory transduction histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 551

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 3/289 (1%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-AERALTEKNEAL 562
           + SF  +           ++ + E + I + N Q       V    R     L   N AL
Sbjct: 122 VCSFYRQPHRCTEEEVQFAEVLAERAAIAIDNYQLYQRQQLVNAQYRQLSEQLVIVNAAL 181

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A  +K+ F+  +S+ELR+PLT IIG  ++L+    GSLN KQ + V  I  S   LL 
Sbjct: 182 ERAAGLKDEFLSTMSHELRTPLTAIIGLAEVLREEVYGSLNPKQLKSVCTIEESGETLLT 241

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            +ND++DL+ +++G + L    + ++ L+      +  +  + NI +       L     
Sbjct: 242 QLNDLIDLSKIESGNLVLERRRVSISALVESCLAMVRPQAQKQNITLSHHIPTDLAEVTG 301

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+   ++SNA+ F+ +G  V ++A  D       V + G  I      ++F  F
Sbjct: 302 DELRLRQVLQNLISNALKFTPQGGAVSVQATADTEQVQVRVTDTGIGIATADLANIFEPF 361

Query: 743 VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V           G GLGL++V+  I+LHGG V + S     +T    +P
Sbjct: 362 VQLDSSWARPYPGTGLGLTLVQRLIHLHGGTVQVESEVGSGSTFIVTLP 410


>gi|320322879|gb|EFW78970.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329812|gb|EFW85800.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330874310|gb|EGH08459.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330890506|gb|EGH23167.1| two-component sensor/regulator [Pseudomonas syringae pv. mori str.
           301020]
          Length = 576

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/523 (22%), Positives = 208/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+  
Sbjct: 342 KDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VSFAQAGVIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 1107

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 199/499 (39%), Gaps = 26/499 (5%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           +    IL      I   D    +   N +  ++       L    S   LL    + N  
Sbjct: 271 SRLNAILETAIDGIVTIDHQGIILSFNDAASKILGWREHELQGK-SVQILLNDNNALNNA 329

Query: 366 PEQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
               +       I  + + +   HKD   +P    +  +  +      +    +LT Q  
Sbjct: 330 SSSGDMTLDLSAIIGINRDTFAKHKDNHLIPVRLGIGQVTQTGQPPLYVGFITDLTQQRA 389

Query: 425 LETKYNTLVKVQGETIDHLSEGVAV---FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           L+       +     + ++  GVA    F  +  +   +P+   L     +      HI 
Sbjct: 390 LQKTVVENEQKYRSLMQNMP-GVAFRCKFDTNYTMLFVSPSILDLTGYTPDEFIE-QHIE 447

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDS---VLEYSIIPLPNAQ 537
                 +    +SD   +   +  +  ++R+ S++  +   + +   VLE       N  
Sbjct: 448 -----FTDLILKSDQQMIITTLTNAVTEKRQYSVEYRIRHRNGATVWVLEKGSFDFNNTD 502

Query: 538 TMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                     ++T+    E  L        +A   K SF+ ++S+E+R+P+  IIGF+DL
Sbjct: 503 VAQWIDGVLVDITERKEYEAKLEHAKLQAEEAANAKQSFMANMSHEIRTPMNAIIGFSDL 562

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +    L+ +Q +++  ++ ++  LL L+N+ILD A ++ G + +      L  +++ 
Sbjct: 563 LMDT---PLSKEQQKHLVTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFNLKPVIDS 619

Query: 654 VKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +  +   +  + N+ + +  +  +  ++  D  RL QI + ++ NA+ F+ +G+  +  +
Sbjct: 620 IISTFWLEAKKKNLNLTLNINKSVSTAYYGDPDRLRQILTNLIGNAIKFTEQGAVTVTVS 679

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
              N    F V++ G  I +D  K+VF  FV       RR  G GLG +I +  + L  G
Sbjct: 680 TTQNNHLFFEVQDTGIGIAKDRIKAVFQPFVQADGTTTRRFGGTGLGTTISKQLVELMHG 739

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S  +  +     +P
Sbjct: 740 SIDLVSEVDKGSCFYFSLP 758


>gi|330963166|gb|EGH63426.1| two-component sensor/regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 576

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 118/523 (22%), Positives = 209/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 TQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  SS  LL+L+NDILDL+ V+AG+M L    + L++LL+  
Sbjct: 342 KDGMVGDMTDAQRRYIGDIFNSSQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VSRAQVGILGGDWPVHSFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|197116777|ref|YP_002137204.1| PAS/PAC domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197086137|gb|ACH37408.1| sensor histidine kinase response regulator, PAS and PAC
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 647

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 166/387 (42%), Gaps = 20/387 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-----RSLWKTEE 471
           + +  ++  E +           +      +       +    N  +     R++ +   
Sbjct: 26  QEIQERLRAEGQLAEARDHYLNILAEAPALIWRADTQAKCDWFNHTWLSFTGRTMEEEYG 85

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           +  + G H  ++    + +         F       +   +   G    + D    +S +
Sbjct: 86  DGWAQGVHPDDLERCVAIWLGAFHQKAPFE-----MEYRLRRHDGVFRWILDIGRPFSGL 140

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
               A  +    ++TD   AE  L    EA   A + K  F+ ++S+E+R+P+ +IIG T
Sbjct: 141 DGSFAGYIGYCFDITDRKGAEMELVLAREAAEAASKAKTEFLANMSHEIRTPMNSIIGMT 200

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  ++   L+++Q +YVE I  SS  LL ++NDILDL+ V+AG ++L      L   +
Sbjct: 201 QLLAYTE---LSAEQKEYVEGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSLRQSI 257

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VI 709
           NE+ ++     HE  +++KV    ++  + V DR RL Q+   I+ NA+ F++ GS  V 
Sbjct: 258 NEIIRTQTAAAHEKGLQLKVSIPEEIPDAVVGDRLRLKQVLLNIIGNAIKFTASGSIAVT 317

Query: 710 LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           +  A    +     FSV + G  I  +    +F  F        RR  G GLGLSI    
Sbjct: 318 VALAEKKEEAARITFSVTDTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSISTKL 377

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + L GG +   S     +T +  IP +
Sbjct: 378 VRLMGGRIWAESRKNAGSTFHFEIPFR 404


>gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora
           sp. 8437]
          Length = 585

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 162/370 (43%), Gaps = 25/370 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +  LET      +     I+ +  G+ +    G+I L+N AF   +  +  +L       
Sbjct: 238 RYQLET-IRKSERRLTGVIETMDSGLIMVDSKGKITLANQAFHRFFNLKPRQL------- 289

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +  +        D   L    + S +  R  +   L    + ++E  + P+   +    
Sbjct: 290 -LHKSLPEGAIFHDLNRLVRKCMESGERVRDEIH--LYFPEERIMEARLTPIWEERGETG 346

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            + V   + A R L          ++++  FV +VS+EL++P+T++ GF + L       
Sbjct: 347 VMAVIHEITAIRRL----------EKMRTEFVANVSHELKTPVTSLRGFAETLLDGAAED 396

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  + +++E I A S  L  L+ D+LDL+ +++  M L+  TI + +LL    +++  +
Sbjct: 397 PD-MRKEFLEIIQAESLRLERLIADLLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQ 455

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           M +  +  +V S+ +      D  R  QI   +LSNAM ++  G  VIL A R   D+  
Sbjct: 456 MRKRKLSFRVKSEEEFP-VQVDPDRFSQILLNLLSNAMTYTPAGGEVILSAGRGETDWWI 514

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  IP +    +F RF         +  G GLGL+IV+  +  H G + ++S   
Sbjct: 515 RVADTGIGIPGEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAG 574

Query: 780 GVTTINCRIP 789
             T I    P
Sbjct: 575 KGTEITLTFP 584



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 20/137 (14%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +  T+         ++  +   + + D    +   N++F   + +    L          
Sbjct: 240 QLETIRKSERRLTGVIETMDSGLIMVDSKGKITLANQAFHRFFNLKPRQLLHKS------ 293

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTS----NPRG 410
                   LPE   +      +    +S E  +D  HL  P  + +   +T         
Sbjct: 294 --------LPEGAIFHDLNRLVRKCMESGERVRDEIHLYFPEERIMEARLTPIWEERGET 345

Query: 411 GTIWMFENLTVQVDLET 427
           G + +   +T    LE 
Sbjct: 346 GVMAVIHEITAIRRLEK 362


>gi|294506227|ref|YP_003570285.1| two-component system sensor protein [Salinibacter ruber M8]
 gi|294342555|emb|CBH23333.1| two-component system sensor protein [Salinibacter ruber M8]
          Length = 1111

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 122/693 (17%), Positives = 255/693 (36%), Gaps = 82/693 (11%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV---WHRDQAG--DILWANISYKKN 225
             +G+  ++ +     + +      F+ LF +L   V   W  D+ G   +   N +++  
Sbjct: 425  FNGVLLDITDRREAEQAVQAERDRFETLFHNLPTPVVHGW-SDEEGHLRVQTVNDTFESV 483

Query: 226  TET--EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
                 E I  +    E      ++    +       +     V        + +++   L
Sbjct: 484  FGIGEEQIRTKDLQAEIVPPDAQDEADSIRRWLLAGEPVDREVRRETSDGTRDFRVQVTL 543

Query: 284  NSFG---EAGIAI--DVSKEITVNDQLTHTYEILHNLTVAI--AIF----DQNRYLQFHN 332
               G     G AI  D+++  T   +L     +L  L   I   ++    D++  ++F +
Sbjct: 544  RDDGPGPTEGYAIYTDITERKTKERELRTRGRLLKQLRENITDVVWMSPADKSE-IEFIS 602

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
             ++ E+W      L  +P  + ++E +  A++   Q    T +       K  + +++T+
Sbjct: 603  DAYEEIWGRPTDQLHDHP--NAVVEAIHPADRERVQAALDTQR-------KDPDAYEETY 653

Query: 393  HL--PNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
             +  P+G    V   +    G        I +  ++T +   E                 
Sbjct: 654  RVVQPDGTVRWVRDRAAGVYGEDGRLERIIGVATDITERKRREQVLQARQDKVEALYTTT 713

Query: 444  SEGVAV--FGPDGR--IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            S+ +        GR  + L N  F         R          +   + +      +D+
Sbjct: 714  SQVLRAESTTAVGRSIVDLVNEVFGYPVVIVRFREDECLVPVQASPDVADHVPNPSSFDV 773

Query: 500  FAA--IITSFDDERKSLQGTLELLSDSV-----LEYSIIPLPNAQTMLTFVNVT------ 546
                 + T+F D   +L   L  + DSV        +++P+    T+             
Sbjct: 774  TGESVVATAFRDGDTALFDDLSAVGDSVDYGAVRATAVVPIGTHGTISVAALEAGAIAGF 833

Query: 547  ----------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                            D +  E  L    E   + + +K++F+ ++S+E+R+PLT+IIGF
Sbjct: 834  DRRLIEILSTYAALVLDRIEYEGELVSAKEEAERLNRMKSAFLANMSHEIRTPLTSIIGF 893

Query: 591  TDLLKTSKLGSLNSKQS---------QYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
             +++       L    S         Q+ + I  S   LL  ++ +L+L+ ++AG M+L+
Sbjct: 894  AEVIGDEATSLLEHSDSPPDAVTALDQFADLIEESGHRLLETLDTVLNLSRLEAGEMELD 953

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             S + L D + E       +     I ++  +         D   L      ++SNA+ +
Sbjct: 954  CSPLDLADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEGGLRIALQNLISNALKY 1013

Query: 702  SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
            + +G TV ++A R   D    V++ G  +  D    +F  F   +        G GLGL+
Sbjct: 1014 TEEGGTVRVRAGRRGDDVALEVEDTGVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLA 1073

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + +  I   GG +++ ++    +    R+P+ +
Sbjct: 1074 VTKQAIEQMGGTIAVETAKGDGSCFTVRVPAAD 1106



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/429 (14%), Positives = 136/429 (31%), Gaps = 32/429 (7%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           S + A  R++       E         +L    +  + LF+    ++   D  G +L AN
Sbjct: 165 SDAAALARLVQAVEQTLERRR---PEARLRQTSARLEALFEEAPDMITFHDADGQLLLAN 221

Query: 220 ISYKKNT--ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
               + T  + + +  +        L  ++ + R  + +  +++  E     + G+    
Sbjct: 222 PRLCEMTGYDADTLTRRHMWDVDVSLNPDDARARWATMAPGDQHRREGRYRRKEGSTFPV 281

Query: 278 KI----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
           ++    + V  +        D ++     + L      L  L  ++         QF+ R
Sbjct: 282 EVDLRCIAVDGARQFVATGWDTTEHRRTENALREKEARLRGLANSL----PGVTYQFYVR 337

Query: 334 SFVELWEID------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
              E W          + L  +P  D   +        PE            +       
Sbjct: 338 PGGE-WGYHFVGEKAASVLGLSPDPDGFYDRFVQC-IPPEHRERYRASTKAAAAEHRPAR 395

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            +  +  P+G  + ++ +S P           +  ++T + + E               +
Sbjct: 396 MELPFERPDGTRIWLLCSSMPERRENETLFNGVLLDITDRREAEQAVQAERDRFETLFHN 455

Query: 443 LSEGVAV--FGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           L   V       +G  R++  N  F S++   E ++        I    ++   +S    
Sbjct: 456 LPTPVVHGWSDEEGHLRVQTVNDTFESVFGIGEEQIRTKDLQAEIVPPDAQDEADSIRRW 515

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L A      +  R++  GT +      L     P P  +    + ++T+    ER L  +
Sbjct: 516 LLAGEPVDREVRRETSDGTRDFRVQVTLRDDG-PGP-TEGYAIYTDITERKTKERELRTR 573

Query: 559 NEALRKADE 567
              L++  E
Sbjct: 574 GRLLKQLRE 582



 Score = 71.1 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 73/593 (12%), Positives = 179/593 (30%), Gaps = 74/593 (12%)

Query: 15  EICTLFSCKIAVFGTIAGMLLTTIIP----------IILLIRQRNSLAKKVNETYSFLSE 64
            + T    K+   G + G L                   L R   ++ + +       + 
Sbjct: 131 RLSTYLGAKVVADGALYGTLCFVDRAPRQAAFDESDAAALARLVQAVEQTLERRRPE-AR 189

Query: 65  ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL-SFENW----- 118
           +    ++  +L  E   +    D   +   ++    +  ++   D D L     W     
Sbjct: 190 LRQTSARLEALFEEAPDMITFHDADGQL--LLAN-PRLCEMTGYDADTLTRRHMWDVDVS 246

Query: 119 LKFHHYIKLSKAT---EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
           L               ++ R+EG+       T     ++++ R     A           
Sbjct: 247 LNPDDARARWATMAPGDQHRREGRYRRKEGSTF---PVEVDLRCI---AVDGARQFVATG 300

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLV--WHRDQAGDILWAN-------ISYKKNT 226
            +  E       L    +  + L +SL  +   ++    G+  W          S    +
Sbjct: 301 WDTTEHRRTENALREKEARLRGLANSLPGVTYQFYVRPGGE--WGYHFVGEKAASVLGLS 358

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-TLEHGNNKSYKIVRVL-- 283
                 + + +       +E  +    +++A  +     +      G         +   
Sbjct: 359 PDPDGFYDRFVQCIPPEHRERYRASTKAAAAEHRPARMELPFERPDGTRIWLLCSSMPER 418

Query: 284 --NSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAI--FDQNR--YLQFHNR 333
             N     G+ +D++     E  V  +      + HNL   +     D+     +Q  N 
Sbjct: 419 RENETLFNGVLLDITDRREAEQAVQAERDRFETLFHNLPTPVVHGWSDEEGHLRVQTVND 478

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +F  ++ I    + T     E++             + +   ++I     + E       
Sbjct: 479 TFESVFGIGEEQIRTKDLQAEIV-----------PPDAQDEADSIRRWLLAGEPVDREVR 527

Query: 394 LP--NG-QTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
               +G +   V VT    G        ++ ++T +   E +  T  ++  +  +++++ 
Sbjct: 528 RETSDGTRDFRVQVTLRDDGPGPTEGYAIYTDITERKTKERELRTRGRLLKQLRENITDV 587

Query: 447 VAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           V +   D   I+  + A+  +W    ++L    +    A   +         D       
Sbjct: 588 VWMSPADKSEIEFISDAYEEIWGRPTDQLHDHPNAVVEAIHPADRERVQAALDTQRKDPD 647

Query: 506 SFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           ++++  + +Q  GT+  + D             + +    ++T+  R E+ L 
Sbjct: 648 AYEETYRVVQPDGTVRWVRDRAAGVYGEDGRLERIIGVATDITERKRREQVLQ 700


>gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 842

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 129/252 (51%), Gaps = 10/252 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
               +  +  +    + EA  +A++ K+ F+  +S+E+R+P+  ++G   +L  +    L
Sbjct: 427 FMEVELKKNIKEACREKEAAEQANQAKSEFLARMSHEIRTPMNGVLGMASILADT---PL 483

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + KQ +Y++ I +S   LLN++NDILD + ++AG + L+     L++LL+ +    + + 
Sbjct: 484 SEKQRKYLDTIVSSGESLLNIINDILDFSKIEAGKLDLDNHPFKLSELLSYLTDIFSPRA 543

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-- 718
           H  NI +   ISDG   + + D  RL QI + ++ NA+ F+ +GS  +I++ + ++    
Sbjct: 544 HSKNIELICAISDGIPETLIGDSGRLRQILTNLVGNALKFTQQGSIQIIVEISDEDARNM 603

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
               SV + G  IP    + +F  F        R   G GLGLSI +S + L GG + + 
Sbjct: 604 KLKISVIDTGIGIPLGKQQKIFESFSQADGSTTRTYGGTGLGLSISKSLVELMGGELGVE 663

Query: 776 SSDEGVTTINCR 787
           S     ++    
Sbjct: 664 SRPGEGSSFWFS 675


>gi|309790857|ref|ZP_07685401.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227144|gb|EFO80828.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 899

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 89/402 (22%), Positives = 176/402 (43%), Gaps = 41/402 (10%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGET------IDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +F+ +T   + E +Y  L + Q E       + +L++GV V    G + ++N A  +   
Sbjct: 508 LFQMITS--EAERRYELLDRQQTEASQIEAILQNLADGVIVCDLYGSVLMANEAAGTTLG 565

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                L        I         E    +L A  + + D  R  +  +   +   ++  
Sbjct: 566 RTIEDLLLWNLHDIINRYLGSRSPEMPLTELLARPLDALDQRR--IFTSTAKVGMRMISM 623

Query: 529 SIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           ++ P+   + Q +   + V D  R   A           D +K  F+  +S+ELR+P+T 
Sbjct: 624 TMGPVLKEDGQLLGALLVVRDITREIEA-----------DRLKTEFIGTMSHELRTPMTA 672

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I GFT LL    LG LN  Q ++V  I +++  ++ L+ND+LD+  +++G + L + ++ 
Sbjct: 673 IKGFTQLLAMGGLGPLNDTQREFVNTIHSNTERMIALINDVLDITKIESGSVDLEWRSLH 732

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L ++L+ V   +   +      + +     +    AD  RL QI   +LSNA+ ++ KG 
Sbjct: 733 LVEVLSGVISEVQPAVSAREHELTISIPPGMPLVRADAHRLHQILFNLLSNAIKYTPKGG 792

Query: 707 TVILKAAR----------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
            + ++A                  +      ++++ G  I  +    +F+RF    +  +
Sbjct: 793 KISVEAYEARADELPDYLRSGVTAEKRYVQVNIRDTGVGIDREEIGRIFDRFYRTENPLK 852

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +  G GLGLS+V+  + L  G + + S+    +T +  +P+
Sbjct: 853 IEAGGTGLGLSLVKPLVELLNGKIWVESTVGQGSTFSLLLPT 894


>gi|254413818|ref|ZP_05027587.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179415|gb|EDX74410.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1229

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 129/685 (18%), Positives = 258/685 (37%), Gaps = 70/685 (10%)

Query: 153  IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
            I  +G V G  AF  I  +  +    A    + ++ S   +  +     L + +   +Q 
Sbjct: 414  IDPQGHVKGFYAF--INDITDLKQIEAALRDREQRFSTLFNGMEDWV--LVYPLTADNQP 469

Query: 213  GDILWAN-ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G ++  N  + K+   T   +   ++ +   +   +++         ++   E+V   + 
Sbjct: 470  GQLIEVNEPACKRLGYTRQELLTLSVADILDIPLADLQVSFQKLLQEKRVVVESVHRTKA 529

Query: 272  GNNKSYKIVRVL----NSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFD 323
            G     ++   L           I  D+++       L  +  +L+    +  + IA FD
Sbjct: 530  GQQIPVEVSSTLFMLDGLPTVQSICRDITERKQAELALRKSETVLNAFIASSPIGIAFFD 589

Query: 324  QNRYLQFHNRSFVELWEIDLAFLATN----------PSNDELLEFLRSANKLPEQLNWKT 373
             +    + N +   +  + L+               P    +L+ +    +   +LN++ 
Sbjct: 590  HDLRYLYANEALATMNGVPLSQHLGRTLWEVVPQMAPEFAPMLDQILQTRQ--PRLNFEF 647

Query: 374  WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN--- 430
              E    +Y  +  +     LP+G+ L          G       ++    +E       
Sbjct: 648  SGEVQPGIYCHALANHFPVCLPDGELL----------GVGVTIMEISELKRVEGALRLSE 697

Query: 431  ----TLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
                  V+     ++     + +   PD     +N    +L +     ++  T +     
Sbjct: 698  AFAHARVQELETLMEITPAALWIAHDPDCHQMTANRTAYNLMRMPLGSVTTATPVDGSYP 757

Query: 486  T-------CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
                       Y  E       A       DE   ++   E  +   +    +PL +   
Sbjct: 758  LPFKQYKNGQEYIPEDLPMQRAARTGQEVIDE---IEFVFEDGTVRFIYGKAVPLYHDSG 814

Query: 537  ---QTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTN 586
                 +  FV++T+  +AER   +     R A       + IK+ F+  +S+ELRSPL  
Sbjct: 815  EVRGVIGAFVDITERKQAEREHEQLLARERAAREEAESANRIKDEFLAILSHELRSPLNP 874

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            I+G+T LL+T +     + ++  +  I  ++TI + LV+D+LD+A +  G + L    + 
Sbjct: 875  ILGWTKLLRTRQFDPAATDKA--LATIERNATIQIQLVDDLLDVARILRGKVVLTRHRVD 932

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            L   +    +++       +I+I+    GK+G    D  RL Q+   +LSNA+ F+  G 
Sbjct: 933  LAIAIKAAIETVQLAAEAKSIQIQPHFIGKVGLVEGDSGRLQQVVWNLLSNAVKFTPSGG 992

Query: 707  TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
             V +  A  +     +VK+ G  I  D+   +F+ F         Q  G+GLGL+I    
Sbjct: 993  QVEVTLATVDEFAQITVKDTGIGISADILPHIFDYFRQADSSMTRQFGGLGLGLAIARHL 1052

Query: 765  INLHGGHVSISSS-DEGVTTINCRI 788
            ++LHGG +   S  +    T   R+
Sbjct: 1053 VDLHGGIIQADSPGEGQGATFTVRL 1077



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/566 (12%), Positives = 177/566 (31%), Gaps = 59/566 (10%)

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVW---DGKDETPEIIGQLHQRIDIPQTDTD 111
             E       +     ++       N L   W     + E  + +  +     + + +  
Sbjct: 176 EAELRQQEECLRLANERFQFAARAVNALIYDWQITRNRVERTDGLTSILGYS-LSEAEPT 234

Query: 112 LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAET--QNDCAIKIEGRVSGSCAFLR-- 167
           L  + + +      ++ + T     +G S+ +      +++  I I  +        R  
Sbjct: 235 LNWWRDRIHPDDGERIDQETATALSQGDSYRVEYRVLHKSNHYIHILDQ---GLVVTRDD 291

Query: 168 ---ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
               + + G   ++++       L    +  +++ D++  L+ + D      + N ++  
Sbjct: 292 QGHPIRVIGSTIDISDRKATEATLKQRETDLRLITDAVPALIAYVDSDCRYRFVNRAFTT 351

Query: 225 --NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY----- 277
                 E ++ Q           E + + + ++ A E    E     + G ++       
Sbjct: 352 WFGHSAENLIGQSVADFVGAEVYEYMSRDIEAALAGEPINVEMWMPFKDGGSRYVRRQYI 411

Query: 278 -KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF---------DQNRY 327
             I    +  G      D++    +   L    +    L   +  +         +Q   
Sbjct: 412 PDIDPQGHVKGFYAFINDITDLKQIEAALRDREQRFSTLFNGMEDWVLVYPLTADNQPGQ 471

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           L   N    +        L T  S  ++L+   +  ++  Q   +  +  + SV+++   
Sbjct: 472 LIEVNEPACKRLGYTRQELLTL-SVADILDIPLADLQVSFQKLLQEKRVVVESVHRTKA- 529

Query: 388 HKDTWHLPNGQTLHVIVTS---NPRG--GTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                    GQ + V V+S      G      +  ++T +   E        V    I  
Sbjct: 530 ---------GQQIPVEVSSTLFMLDGLPTVQSICRDITERKQAELALRKSETVLNAFIAS 580

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G+A F  D R   +N A  ++     ++    T    +      +    D       
Sbjct: 581 SPIGIAFFDHDLRYLYANEALATMNGVPLSQHLGRTLWEVVPQMAPEFAPMLDQILQTRQ 640

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM---LTFVNVTDSVRAERALTEKN 559
              +F+   +   G   +   ++  +  + LP+ + +   +T + +++  R E AL    
Sbjct: 641 PRLNFEFSGEVQPG---IYCHALANHFPVCLPDGELLGVGVTIMEISELKRVEGALRLSE 697

Query: 560 EALRKADEIKNSFVQH------VSYE 579
                  +   + ++       ++++
Sbjct: 698 AFAHARVQELETLMEITPAALWIAHD 723



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 75/499 (15%), Positives = 149/499 (29%), Gaps = 75/499 (15%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIV 232
           +  E         +L        ++  +    ++  D + G I W N  YK+        
Sbjct: 36  LAQERETRQTVETRLQKTEERLSLVLRATKDAIYECDLEQGIISW-NAPYKELLGDRPES 94

Query: 233 FQKAIGESRKLFKEEIKKRMIS----SSALEKNFCETVSTLEHGNNKSYKIVR----VLN 284
              +     +    + ++ +++    + A   +        +  +     I+     + N
Sbjct: 95  TAYSWEWWIEHLHPDDREEVVANFQETLAGTGDRWGAEYRYQKTDGSYAHILDRGYILRN 154

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL-- 338
             G+A    G   D + +  V  +L    E L            N   QF  R+   L  
Sbjct: 155 QTGKAIRVIGTLFDATTQKQVEAELRQQEECLRL---------ANERFQFAARAVNALIY 205

Query: 339 -WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            W+I    +        +L +  S ++    LNW  W++ I          +    L  G
Sbjct: 206 DWQITRNRVERTDGLTSILGY--SLSEAEPTLNW--WRDRIHPDDGERIDQETATALSQG 261

Query: 398 QTLHV-------------------IVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKV 435
            +  V                   +VT + +G  I +     +++ +   E         
Sbjct: 262 DSYRVEYRVLHKSNHYIHILDQGLVVTRDDQGHPIRVIGSTIDISDRKATEATLKQRETD 321

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                D +   +A    D R +  N AF + +      L   +    + A    Y +   
Sbjct: 322 LRLITDAVPALIAYVDSDCRYRFVNRAFTTWFGHSAENLIGQSVADFVGAEVYEYMSRD- 380

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
                  I  +   E  +++  +              +P+             +     L
Sbjct: 381 -------IEAALAGEPINVEMWMPFKDGGSRYVRRQYIPDIDPQGHVKGFYAFINDITDL 433

Query: 556 TEKNEALRKADEIKNSFVQHVSYE---LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +   ALR  ++  ++    +  E   L  PLT       L++      +N    + + Y
Sbjct: 434 KQIEAALRDREQRFSTLFNGM--EDWVLVYPLTADNQPGQLIE------VNEPACKRLGY 485

Query: 613 ISASSTILLNL-VNDILDL 630
                  LL L V DILD+
Sbjct: 486 TRQE---LLTLSVADILDI 501


>gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1]
 gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1]
          Length = 1049

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 166/419 (39%), Gaps = 43/419 (10%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSN 460
           I   +  G  I  F  L   +                  D + EG+ +  P+   +   N
Sbjct: 344 ITRQDETGQLIGGFNRLLEALAQRDVALRKSEASFRAVFDSMEEGIYIADPESYELLHIN 403

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF-AAIITSFDDERKSLQGTLE 519
             F+ ++  +         ++N  + C    N+    D    + +  F +E   +     
Sbjct: 404 ENFKQIFGKDAIGQKCYRVLQNRESPCPFCTNDKIFGDHLGQSYVWEFQNE---VNKEWY 460

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR--------------KA 565
             SD  + +   P      +   VN+T   +AE  L + NE L                A
Sbjct: 461 RCSDKAIRW---PDGRMVRLEVAVNITKRKQAEEELLQANEQLENATARANELAVQAEAA 517

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ F+ ++S+E+R+P+   IG T LL  ++   L  +Q QY   + +S   LL L+N
Sbjct: 518 NHAKSEFLANMSHEIRTPMNGFIGMTMLLLDTE---LTEEQRQYAGIVKSSGESLLVLIN 574

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG +++      L  LL++   + A K H+  + +   ++  +      D 
Sbjct: 575 DILDFSKIEAGKLEIETLDFDLQSLLDDFAATTAFKTHDKGLELLCAAEPDVPVQLSGDP 634

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-------------FIFSVKNNGSSI 730
            RL QI + ++ NA+ F+ KG   + +K   +                  FSV++ G  I
Sbjct: 635 GRLRQILTNLVGNALKFTEKGEVAIRVKTVGEACQTGQTSLNDDASLLLRFSVRDTGIGI 694

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           P D    +F +F        R   G GLGL+I +    + GG + + S +   +     
Sbjct: 695 PADKIGMLFQQFTQVDASTTRKYGGTGLGLAISKHLAEMMGGEIGVESVEGQGSEFWFT 753


>gi|295084125|emb|CBK65648.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 513

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 123/515 (23%), Positives = 226/515 (43%), Gaps = 43/515 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR-SFVELWEIDLAFLATNPSNDEL 355
           KE+    Q  +  E+L+ L   + IFD N  +   N+ +F EL          +PS +++
Sbjct: 13  KEMEDYKQTLYNDELLNILPDGVIIFDTNGEVIQLNQQAFAEL--------HIHPSVNDM 64

Query: 356 LEFLRSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG- 411
           L F    N+L + LN    KE+I S + +     ++T+ LP    +   V  T  P  G 
Sbjct: 65  LPF--PTNRLFKLLNK---KEDILSTILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGE 119

Query: 412 ------------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI--K 457
                        ++ F N+TV++  E   NT ++       +     + F  D R    
Sbjct: 120 FATIRDRTNLNKILFFFRNITVELTQEYILNTALQRTRIYPWYYDISRSEFTLDDRYFEH 179

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L  PA  +   T E  ++   H  +       +  +  G   F   +  F   R    GT
Sbjct: 180 LGIPAGENNTLTMEEYVNM-IHPDDRQPMADAFVVQLSGNTTFDKTV-PFRLRRG--DGT 235

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            E         + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S
Sbjct: 236 WEWFEGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMS 295

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++DILDL+ +++  
Sbjct: 296 HEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNT 355

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +K  +S   LN L+ ++++  A K   + I IK +   +      D  RL Q+    ++N
Sbjct: 356 IKFTFSNCSLNSLMMDIEKEQAMK-PISEIEIKSLLPDEDVYINTDITRLKQVICNFINN 414

Query: 698 AMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           A  F+ KG  +      DN         V++ GS IP++    +F+RF        ++G 
Sbjct: 415 ARKFTQKG-YIHFGHTLDNRNADSVQIFVEDTGSGIPQECLNEIFDRFYKVDTF--KQGT 471

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI ++ +    G +S+ S     +     +P
Sbjct: 472 GLGLSICKTIVEHLQGDISVKSEIGKGSCFTVTLP 506


>gi|288941216|ref|YP_003443456.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896588|gb|ADC62424.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1169

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 89/535 (16%), Positives = 197/535 (36%), Gaps = 45/535 (8%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-AFLATNPSN 352
           + ++             +L ++  AI + D++  +Q +N+    ++   +   L      
Sbjct: 128 EANRRRQTLVTKVQFRALLDSVQDAIMVVDEHGRIQVYNQGAEAIFGYAMREMLGQGIGF 187

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----- 407
               +        P QL           VY+      +     +G+ L +  +S+     
Sbjct: 188 LLPGDGYERLKCNPVQLKSPG-DLTGTQVYERRYVVVEGRRH-DGRMLTLEASSSCASVF 245

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                 ++  ++T Q   E       +   E +   S  +  +  DG +   N      +
Sbjct: 246 GSRTYTFILRDITEQQQAEAALRESERRYRELVQSASSAIIRWTRDGTLTFFNEYAERFF 305

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-L 526
                 +     I  +     +    +D   L   ++   +D R ++   +      V +
Sbjct: 306 GWSAEEVVGKCRIDILVP--DQTSTGTDLRGLIENLLAHPEDYRSNINENVCRDGRRVWM 363

Query: 527 EYSIIPLPNAQT-----MLTFVNVTDSVRAERA------------------LTEKNEALR 563
            ++   + +A       +    +VT  ++AE A                  L    E   
Sbjct: 364 SWTNQAIRDAHGAVSEILSVGSDVTARLQAEEAVRRLNADLEQRVTERTAELRAAREQAL 423

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +  + ++ F+ ++S+E+R+P+  ++G   LL+  +  +L  +       I  S   LL +
Sbjct: 424 RLAQARSEFLANMSHEIRTPMNAVLGLAYLLERQE--NLPEEACDLARKIYHSGQSLLGI 481

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682
           +NDILD++ +++G + +  +   L+ +L+ +   + T     ++ + ++         + 
Sbjct: 482 INDILDVSKIESGKILIEQTRFQLSQVLDNLATIMTTAARGKDLALAIVPPRDCDWPLLG 541

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSSIPEDMCKS 737
           D  RL QI   + +NA+ F+  G  V ++              F+V++ G  I  +    
Sbjct: 542 DPLRLGQILINLTNNAIKFTDSG-VVEVRITPVESSASNLVMRFTVRDTGIGIDAETQAR 600

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F  F+       RR  G GLGL I    + L GG + + S+    +T    +P 
Sbjct: 601 LFQPFMQADASTTRRFGGSGLGLMISRQLVELMGGRLGVESAPGVGSTFWFEVPL 655



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 91/295 (30%), Gaps = 40/295 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  EL E   + + L   +  F+ L DS+   +   D+ G I   N   +          
Sbjct: 122 VERELQEANRRRQTLVTKVQ-FRALLDSVQDAIMVVDEHGRIQVYNQGAEAIFGYAMREM 180

Query: 234 QK------AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                     G+  +  K    +             E    +  G     +++ +  S  
Sbjct: 181 LGQGIGFLLPGDGYERLKCNPVQLKSPGDLTGTQVYERRYVVVEGRRHDGRMLTLEASSS 240

Query: 288 EAG---------IAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
            A          I  D+++    E  + +      E++ + + AI  + ++  L F N  
Sbjct: 241 CASVFGSRTYTFILRDITEQQQAEAALRESERRYRELVQSASSAIIRWTRDGTLTFFNEY 300

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ----LNWKTWKENIFSVYKSSETHKD 390
               +      +      D L         +P+Q     + +   EN+ +  +   ++ +
Sbjct: 301 AERFFGWSAEEVVGKCRIDIL---------VPDQTSTGTDLRGLIENLLAHPEDYRSNIN 351

Query: 391 TWHLPNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGE 438
                +G+ + +  T+             + +  ++T ++  E     L     +
Sbjct: 352 ENVCRDGRRVWMSWTNQAIRDAHGAVSEILSVGSDVTARLQAEEAVRRLNADLEQ 406


>gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
 gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
          Length = 2109

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 166/384 (43%), Gaps = 29/384 (7%)

Query: 423  VDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            ++    Y +L + +        +  EG+    PDG    +NPA  +L             
Sbjct: 1468 IENAKLYQSLEQSEYDYKSLFLNAVEGIFRASPDGHFLSANPALATLLGYRSMD-EFHDE 1526

Query: 480  IRNIAATCSRYYNESDGWDLFAAI-----ITSFDDERKSLQGT---LELLSDSVLEYSII 531
            I +IA+ C  +Y + +       +     I +F+   +   G    + L +  VL+ S  
Sbjct: 1527 ITDIASQC--FYVDHERVAFLEKLDTQHKILNFETRWRKKSGEPIYVSLSARKVLDAS-- 1582

Query: 532  PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                 Q     +      +A+ A  +        +E K+ F+  +S+E+R+P+  I+G  
Sbjct: 1583 --GQVQYYEGSLTDITERKAKEAAEQARHEAEAENEAKSMFLATMSHEIRTPMNGILGMA 1640

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             L+K    G LNS+Q++ ++ I  +   LL+++N+ILD + +++G ++L     ++ D++
Sbjct: 1641 QLMKQ---GQLNSEQNEQIDTIYNAGQTLLSILNNILDYSKIESGQLELEEKPFLIQDVM 1697

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +E+         E +++I    +  L +   D + L QI   + SNA+ F+ +G  + + 
Sbjct: 1698 DEIYNLFKPVAQEKSLQIVPNIERTLPAVSGDPRVLSQILMNLCSNALKFTHQG-YIRIS 1756

Query: 712  AA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
                   +D     F++++ G  IPE     +F  F         +  G GLGL+I    
Sbjct: 1757 CEGLPDTQDKLKTRFTIEDTGIGIPEKAQSRIFQHFTQADSSITRRYGGTGLGLAITRQI 1816

Query: 765  INLHGGHVSISSSDEGVTTINCRI 788
            I    G +   S++E  TT    +
Sbjct: 1817 IERLNGEIGFESTEEQGTTFWFEL 1840


>gi|167764948|ref|ZP_02437069.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
 gi|167697617|gb|EDS14196.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
          Length = 828

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 105/511 (20%), Positives = 210/511 (41%), Gaps = 30/511 (5%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF------LAT 348
           + +   ++        I  N+   + I+D + +L   N   +E++ I          L  
Sbjct: 330 IRERQALDRSEKLFRNIFANIPAGVEIYDTDGFLVDVNNKNIEIFGIRDKADVIGINLFE 389

Query: 349 NPSND-ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
           NP+   +L+E +R  + +  +L+++   EN+   Y S + +K   +    +         
Sbjct: 390 NPNLSPQLIEQIRDRDIVDFRLDYE--FENVEGYYPSGKRNKINLYTKISKLYDSKGNFT 447

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA---VFGPDGR-IKLSNPAF 463
              G  ++  + T ++D   +            D+   G A   +    G  IK     +
Sbjct: 448 ---GYAFINIDNTERMDALNRICDFENFFLLISDYAKVGYAKSNLLDRKGYAIKQW---Y 501

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL----QGTLE 519
           +++ + E   LS    + N      R       +      +  F  E + L    +    
Sbjct: 502 KNMGEDENTPLSDIIGVYNKMHPDDRKRILDFLYKARLGEVRDFKGEIRILHPGTEAQWN 561

Query: 520 LLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +  +V+     P     + +    ++T+    E  L +  E    AD +K++F+ ++S+
Sbjct: 562 WVRTNVVVNQYQPENGVIELISVNYDITELKETEAKLIDAKEKAETADRLKSAFLANMSH 621

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GF+ LL     G    ++ QY+  +  ++ +LL L++DILDL+ ++AG  
Sbjct: 622 EIRTPLNAIVGFSSLL---VQGENPEEREQYMAIVEENNELLLQLISDILDLSKIEAGTF 678

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                 + +N L  ++ +++  K     + +           V+DR RL Q+ +  ++NA
Sbjct: 679 DFVKQELDVNQLCEDMVRTMKLKARP-GVEVVFDHRLPECIIVSDRNRLNQVIANFMNNA 737

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + F+S GS  +     +     F V + G  I ++    +F+RFV         G GLGL
Sbjct: 738 IKFTSTGSIRLGYGQAETNLLRFYVADTGIGIIQEKQAEIFDRFVKLNSFVH--GTGLGL 795

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI +S +   GG + + S           +P
Sbjct: 796 SISKSIVEQLGGTIGVESESGKGACFWFTLP 826


>gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding
           domain (C-term) [Bradyrhizobium sp. ORS278]
          Length = 774

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 99/410 (24%), Positives = 184/410 (44%), Gaps = 34/410 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I +  ++T Q  L  K         + I+ +SE   ++  + R+ L N  F+ L K  +
Sbjct: 353 LIGIAVDVTEQKSLVEKTVEADLRLRDAIETISEAFVLWDSNNRLVLCNSHFQKLHKLPD 412

Query: 472 NRLSPGTHIRNIAA------TCSRYYNESDGWDLFAAIITSFDD-------ERKSLQGTL 518
           + ++PGT    +          +R ++ S             DD       ER++  G  
Sbjct: 413 SAVTPGTSYETVIEVGKMPEIRTRLHDNSQQAQGGRTFEAQLDDGSWLHISERRTKDGGY 472

Query: 519 ELL----------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             +                +D  L  ++I L  +Q+ L    +  +  AE+  +++    
Sbjct: 473 VSVGTDITRIKEHEQKLVDNDLRLRATVIDLQRSQSALERQAIELADLAEKY-SQEKTRA 531

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621
            +A++ K+ F+ ++S+ELR+PL  IIGF++++ +   GSL + K  +Y   I  S   LL
Sbjct: 532 EEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLL 591

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD++ ++AG MKL+   + L   L E  + ++ +  + ++ +    +G +   +
Sbjct: 592 EVINDILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKSLVLDADIEGNIP-VI 650

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR+   QI   +LSNA+ F+ +G  V +++       +  + + G  IP      +   
Sbjct: 651 ADRRATKQIMVNLLSNAVKFTPEGGRVTMRSRVFEDKVVLIIADTGIGIPAQSLARLGRP 710

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F            G GLGL+I  S   LHGG + + S  E  T +   +P
Sbjct: 711 FEQVESQMTKTYHGSGLGLAIARSLAQLHGGSMRLRSRLEHGTVVRVTLP 760


>gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 611

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 157/381 (41%), Gaps = 25/381 (6%)

Query: 416 FENLTVQVDLETKYNTLV-KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +T ++      N    +     + ++S+GV      GR+ L N     +  T +  L
Sbjct: 246 FNYMTSRLRDALAQNEEEKEKLASILTNMSDGVIATDETGRVILMNRRASEMLGTSDTDL 305

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I ++       ++  +   + + I          L+ T       ++  +  P+ 
Sbjct: 306 DQ-ADIMSLMNLPDEEWDVLEQGTMHSTI----------LENTGPDGDVFLIRVTFTPIH 354

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +  +           E+          K +  +  FV +VS+ELR+PLT I  +T+ L
Sbjct: 355 RREIGIIGTIAVLQDVTEQE---------KLEASRREFVANVSHELRTPLTTIKSYTEAL 405

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +   +        ++V  I + +  ++ LV D+L L+  D+   +L      + ++L +V
Sbjct: 406 EDGAMED-PELGPRFVSVIQSQTERMIRLVTDLLHLSRFDSHEAELRKQPTNVMEMLEDV 464

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA- 713
               + +M E  I+  +     + +   DR ++ Q+   ++SNAM ++ +G  + L+A  
Sbjct: 465 VDRFSFQMQEKEIKPTLFIANDVDTAWIDRDQIDQVLDNLISNAMKYTPEGGAIALEARL 524

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            ++     SV++ G  IP+     +F RF            G GLGLSI    +  HGG 
Sbjct: 525 TEDRQLAISVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVRAHGGT 584

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +S+ S     T +   +P+++
Sbjct: 585 ISLQSELGKGTKVTFTLPAEK 605



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 26/144 (18%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                 ++      IL N++  +   D+   +   NR   E+       L          
Sbjct: 256 ALAQNEEEKEKLASILTNMSDGVIATDETGRVILMNRRASEMLGTSDTDLDQ-------- 307

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNP------ 408
             + S   LP++     W      V +    H        P+G    + VT  P      
Sbjct: 308 ADIMSLMNLPDE----EW-----DVLEQGTMHSTILENTGPDGDVFLIRVTFTPIHRREI 358

Query: 409 -RGGTIWMFENLTVQVDLETKYNT 431
              GTI + +++T Q  LE     
Sbjct: 359 GIIGTIAVLQDVTEQEKLEASRRE 382


>gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
 gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
          Length = 745

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 150/375 (40%), Gaps = 16/375 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +D   +     +      +  S+ V +     R+   N  F          L    ++
Sbjct: 99  ALIDRNWELKEAEERARSLFESQSDLVVLRDASQRLTFVNDTFCDYAGKPRAELIGTPYL 158

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +            G D   +  T   D++         ++             A+   
Sbjct: 159 LPVIE---------QGDDATESGGTRIHDQKAQTAFGPRWIAWRETLVRPHANEPAEFQC 209

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +VTD   +E AL    +    A+  K+ F+   S+E+R+PL  I+G + LL  +   
Sbjct: 210 VGRDVTDRTESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSTLLLDT--- 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q+ Y + +  S   L++LV ++LD + ++AG + L +    L  ++ E+ + +A 
Sbjct: 267 PLNPEQAAYAKAVKTSGEALMSLVEELLDFSKIEAGKINLEHRPFHLAGMIEEITELLAP 326

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +     I I    D +L      D  RL Q+   + SNA+ F+S+G   +I++      +
Sbjct: 327 RAQARQIEIACYIDERLPLEVAGDAARLRQVLLNLASNAVKFTSRGGVALIVEPGIWPNE 386

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I  D  + +F  F         Q  G GLGL+I E  +   GG +++ S
Sbjct: 387 ISFMVRDTGIGIAPDAQQRIFREFEQADEHIARQYGGSGLGLAISERIVRRMGGRIALES 446

Query: 777 SDEGVTTINCRIPSK 791
                TT    IP +
Sbjct: 447 VPGEGTTFEVSIPLQ 461


>gi|152997384|ref|YP_001342219.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150838308|gb|ABR72284.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 902

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 106/546 (19%), Positives = 220/546 (40%), Gaps = 28/546 (5%)

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS-----KEITVNDQLTHTYEILHN 314
           + F   +       N  Y+++ V   F E G  ++              +      +L+N
Sbjct: 127 ECFWIEMRGSVTRRNSHYRVLSVAGIFEEIGHLVETETALIVAREEARRRELTLSSLLNN 186

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLN 370
           +   +   D+       N++F++  ++    +      D  L+    + +S  ++P Q  
Sbjct: 187 IPDIVWSKDEQGNYLDCNQAFLDFNQLTALEIKGKSDLDLNLDGKGAYYQSVGEVPLQTG 246

Query: 371 WKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
             + ++         E    + + +P      VI  S    GT+ +  ++T +  L   +
Sbjct: 247 ITSHEQGWGYPKDGGEPCLFEVYRVP------VIEPSINFRGTLGIARDITERHQL---F 297

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN----RLSPGTHIRNIAA 485
           N L K+     D+ ++G A+   DG I   N   RSL    E      L+   ++     
Sbjct: 298 NQL-KLFKSFADNSAQGFAMATLDGDITYFNKKIRSLLGVGEEASDVSLAEYNYLEFYPE 356

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              ++  E+    +    +   + + KSL G +    ++                   ++
Sbjct: 357 ASQKFLKETVIPYVREHGVWEGELQAKSLDGHIFATYETYFLLRDENGKATSVGDIMNDI 416

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+       L +  EA  +A + K+ F+ ++S+E+R+PL  IIG+  L+      +  S+
Sbjct: 417 TEQKYVSMELEQAKEAAEQASQAKSHFLANMSHEIRTPLNAIIGYAQLISEDNQLTGVSR 476

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              ++   +++   LL L+NDILD+A +++G + L+   + L   ++++ +    +  E 
Sbjct: 477 TR-FLSI-ASAGHRLLGLINDILDIARIESGRLVLHEQKVNLCREVSQISKLFQGQAQEK 534

Query: 666 NIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + + V  D  +      D  +  QI + +L NA+ F+ +G  V             S++
Sbjct: 535 GLELIVECDIDERRFVWIDPVKFQQIITNLLGNAVKFTDQG-YVKAVVQIVEDRIHISIE 593

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  I  ++   +F  F+         G GLGLS+  + + L  G +S+ SS+   T I
Sbjct: 594 DTGPGIEAELMDHLFTPFIQGKAGEASGGTGLGLSLSTTLVKLMNGTLSVKSSEGVGTQI 653

Query: 785 NCRIPS 790
              +P 
Sbjct: 654 IVDLPL 659



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 75/496 (15%), Positives = 161/496 (32%), Gaps = 66/496 (13%)

Query: 101 QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ---SFDLVAETQNDCA----I 153
           +    P+   D L+F   L     I  +     L ++        +  + QN       I
Sbjct: 75  EEQKTPKRLEDWLAF---LSSEDQITFNTWKTALLEQEAHLAPKSIRLQIQNHLNECFWI 131

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL-------SNHISVFKVLFDSLDFLV 206
           ++ G V+   +  R+LS+ GI+ E+         L                L +++  +V
Sbjct: 132 EMRGSVTRRNSHYRVLSVAGIFEEIGHLVETETALIVAREEARRRELTLSSLLNNIPDIV 191

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           W +D+ G+ L  N ++    +   +  +        L  +    + +    L+       
Sbjct: 192 WSKDEQGNYLDCNQAFLDFNQLTALEIKGKSDLDLNLDGKGAYYQSVGEVPLQTGITSHE 251

Query: 267 S----TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLT 316
                  + G    +++ RV       N  G  GIA D+++   + +QL        N  
Sbjct: 252 QGWGYPKDGGEPCLFEVYRVPVIEPSINFRGTLGIARDITERHQLFNQLKLFKSFADNSA 311

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK-------LPEQL 369
              A+   +  + + N+    L  +       + +    LEF   A++       +P   
Sbjct: 312 QGFAMATLDGDITYFNKKIRSLLGVGEEASDVSLAEYNYLEFYPEASQKFLKETVIPYVR 371

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW-MFENLTVQV----D 424
               W+  + +  KS + H    +    +T  ++   N +  ++  +  ++T Q     +
Sbjct: 372 EHGVWEGELQA--KSLDGHIFATY----ETYFLLRDENGKATSVGDIMNDITEQKYVSME 425

Query: 425 LETKYNTLVKVQGE---TIDHLSE-------GVA----VFGPDGRIK-LSNPAFRSLWKT 469
           LE       +        + ++S         +     +   D ++  +S   F S+   
Sbjct: 426 LEQAKEAAEQASQAKSHFLANMSHEIRTPLNAIIGYAQLISEDNQLTGVSRTRFLSIASA 485

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD------ERKSLQGTLELLSD 523
               L     I +IA   S      +        ++          + K L+  +E   D
Sbjct: 486 GHRLLGLINDILDIARIESGRLVLHEQKVNLCREVSQISKLFQGQAQEKGLELIVECDID 545

Query: 524 SVLEYSIIPLPNAQTM 539
                 I P+   Q +
Sbjct: 546 ERRFVWIDPVKFQQII 561


>gi|330950455|gb|EGH50715.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 1350

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 135/766 (17%), Positives = 266/766 (34%), Gaps = 110/766 (14%)

Query: 124 YIKLSKATEKLRKEGQS--------------FDLVAETQNDCAIKIEGRVSGSCAFLRIL 169
               ++   ++R +G+               F +         ++  G    S    R  
Sbjct: 112 ASDEAEFVRRVRADGRPDFSLGRLGAQQGDRFIIQFIDPLARNVQALGLDIASEEHRRDA 171

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF---LVWHRDQAGD----ILWANI-- 220
           +L  + S  A  +     L ++    +     L          D A      I W     
Sbjct: 172 ALQAMRSGAATLSAPITLLQDNDDHLRAFLFLLPVYSTPETPTDIALRETSLIGWTYAPL 231

Query: 221 SYKKNTETEGIVFQKA------IGESRKLF----KEEIKKRMISSSALEKNFCETVSTLE 270
           + ++       +  +       + E + L     +   ++ ++ + A E++    V  +E
Sbjct: 232 AMREVMSNLDPLNHRVHLKLYDVSEGQHLIYQTPESGHEQEVLQTYAFERDIYGRVWRME 291

Query: 271 HGNNKSYKIVRVLNSFGEAGI----------------AIDVSKEITVNDQLTHTYEILHN 314
            G + ++         G A I                 +   ++  V         I+ N
Sbjct: 292 VGAHPAFAEALDPVPAGRAFIIGTLVSLMLTVLVGTLLLSRQRKQQVVAGQARLATIVEN 351

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
            + AI     +  +   NR+  +++  D   +   P        L      P+ ++    
Sbjct: 352 SSDAIIGEALDGRIITWNRAAEQMFGYDEHEVLGCP--------LAPLLVPPDLVHEDEQ 403

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGGTIW---MFENLTVQVDLET 427
                +  +   T +      NGQ + V +T        G  +    M  ++T +  +E 
Sbjct: 404 LLERVARGERGPTLETRRLHKNGQLIDVTITCSFIRETDGTILGAAKMMHDITDRKRVER 463

Query: 428 ---KYNTLVKVQ---------------GETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWK 468
              ++N  ++ Q                  +D  SE  +      G+I + N     L  
Sbjct: 464 YLMEFNAQLEQQVSERTAELSRVAGLLQGVLDASSEVSIIATDMQGQIFVFNRGAELLLG 523

Query: 469 TE--ENRLSPGTHIRNI--------AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
               E     G  + ++        A     Y    +G D+F    +    E +      
Sbjct: 524 YSNAEMVSGNGPGVFHLPEEVAARSAELSREYGTPIEGIDVFCYKASLEGSETRQWTYVR 583

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADEIKNSFV 573
           +  +   +   I P+  A   L           ER      L     +   A+  K+ F+
Sbjct: 584 KDGTTVPVLMIITPIRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANAAKSLFL 643

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  +IG + LL  +   +LN +Q Q +  +  +   LL ++NDILD+A +
Sbjct: 644 ANMSHEIRTPMNAVIGISHLLHNT---ALNDQQRQLLTKLQIAGRTLLGIINDILDIAKI 700

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFS 692
           +AG M+L ++      LL+E+ +    +  E  +R  V +     G  + D  R+ QI  
Sbjct: 701 EAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSVSVVASLPGQLIGDALRVNQILM 760

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            ++ NA+ F++ G  V +  +R++         FSV++ G  IP +    +F  F     
Sbjct: 761 NLVGNALKFTTVGG-VDVTVSREDDHADTCWLRFSVQDTGCGIPANALGQLFAPFTQADA 819

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              RR  G GLGLS+V       GG + + S     +     +P +
Sbjct: 820 STTRRFGGTGLGLSVVRGLAEQMGGRIGVESELGTGSEFWVELPFQ 865


>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1437

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/497 (18%), Positives = 176/497 (35%), Gaps = 70/497 (14%)

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              P      E +     LPE  + +  +E +  V + +           G         
Sbjct: 462 EKRPVIHNDYESMPDKKGLPEG-HARVIREAVVPVIRDNRVVAIM-----GLGNKPAAYD 515

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG----VAVFGPDGRIKLSNPA 462
                 I  F ++T  +  + +    ++     +  +++     + +    G +   NPA
Sbjct: 516 KKDVEVISFFADVTWDLVQQKRTQEALQNSQARLKTITDAAQTAIIMMDAQGYVSYWNPA 575

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
             ++     +        R++           D    F    ++           L  L+
Sbjct: 576 AETILGYARDEAIG----RDLHELIMPSRYTEDFHASFPEFQSTGQGNAVGRTTELYALT 631

Query: 523 DSVLEY-------SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD--------- 566
            +  E        S++       +    ++T+  +A+  L      L   +         
Sbjct: 632 KNGREIPVELSLSSVLIQGQWHAIGIVRDITEKKQAQEELQRNARNLELKNAELDAARIN 691

Query: 567 -----EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                + K+ F+ ++S+E+R+P+  +IG T LL  +    L+S+Q  Y   + +S+  LL
Sbjct: 692 AEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDT---DLDSEQQHYARTVRSSAESLL 748

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILD + ++AG + +      L  +L +    +A K  E  + +    D  + S V
Sbjct: 749 TVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNVPSMV 808

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------------------- 718
             D  RL QI   ++ NA+ F+  G  V +K +R   D                      
Sbjct: 809 RGDSGRLRQILMNLVGNAVKFTEHGE-VEIKVSRMVNDECENPNAETQENSHDLYRSSFT 867

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                   FSV++ G  IPED   S+F  F        R   G GLGL+I      + GG
Sbjct: 868 TQHSCLMHFSVRDTGIGIPEDKQDSLFESFSQVDASTTRKFGGTGLGLAISRQLAEIMGG 927

Query: 771 HVSISSSDEGVTTINCR 787
              + S +   +T    
Sbjct: 928 TAGLESVEGRGSTFWFT 944



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 18/152 (11%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           +L +     + L N  +  K + D+    +   D  G + + N + +      G    +A
Sbjct: 531 DLVQQKRTQEALQNSQARLKTITDAAQTAIIMMDAQGYVSYWNPAAE---TILGYARDEA 587

Query: 237 IGESRKLFKEEIK---------KRMISSSALEKNFCETVSTLEHGNNKSYKI------VR 281
           IG          +             S+         T       N +   +      V 
Sbjct: 588 IGRDLHELIMPSRYTEDFHASFPEFQSTGQGNAVGRTTELYALTKNGREIPVELSLSSVL 647

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
           +   +   GI  D++++    ++L      L 
Sbjct: 648 IQGQWHAIGIVRDITEKKQAQEELQRNARNLE 679


>gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 959

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 203/518 (39%), Gaps = 56/518 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+++    N+Q ++   +L ++   + + DQN+ +   N+ F +  +             
Sbjct: 324 DLTEVSLSNEQFSN---VLESMGDMLVVVDQNQEVLLSNKRFDDFCD------------- 367

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
                    ++  E+     +        +S+E    +      + +    TS       
Sbjct: 368 ---------DQYGEKQGILKFIMQKLGATQSNELKHFSVSTGQERFVRWTKTSLADANGN 418

Query: 410 -GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR---IKLSNPAFRS 465
             G I++  + T Q  LE+     VKV    +D  +  + +         I  +N AF  
Sbjct: 419 IRGDIFVGSDETEQRSLESH----VKVLTHAMDEATVSIIISDIKRVGQPIIYANSAFEE 474

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L       +  G + R++    ++        D     I + +    +L    +  +   
Sbjct: 475 LTGYTREEI-IGHNCRSMQGEETK----EKTIDCIRKAIATREPIETTLLNYKKDGTKFF 529

Query: 526 LEYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              ++ P+     +  +     +VT   + E+ L E  E   ++  +K+SF+  +S+E+R
Sbjct: 530 NRLNLTPVKTNGEITHYIGFQQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEIR 589

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I G   LL       L  +Q  Y+     S   LL++VNDILD + ++AG +++ 
Sbjct: 590 TPIHGISGVLQLL---GGSELTGEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIE 646

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMD 700
            S   + + L  ++   A    E  + +    D +    V  D  R  QI S +L NA+ 
Sbjct: 647 ESPFDILESLENLQSQYAILCQEKGLELHFHFDLQGYHVVQGDDVRFRQILSNLLGNAVK 706

Query: 701 FSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           F+  G   +      N D     + SVK+ G  I +D   ++F+ F        R   G 
Sbjct: 707 FTDTGYIEVTTCIEKNPDNTLRLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGT 766

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGLSI +    L GG + + S     +T +  I  +E
Sbjct: 767 GLGLSISKQLCGLMGGDIKLESVKGNGSTFSFTIQLEE 804


>gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 940

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 114/719 (15%), Positives = 240/719 (33%), Gaps = 141/719 (19%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG------------------ 230
            + +     +       ++     G  L  N +  +    +                   
Sbjct: 16  QDDLQDCLEILRDAPVGIFTSTPGGRFLSVNPAMARMLGYDSSHDLIDSITDISAQVYID 75

Query: 231 ----IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
               + F + + E  ++F  E + R    + L       +   + G              
Sbjct: 76  PLDRMEFIRLLEEQVEVFNHECRIRRRDGTVLWVAQNARLVRNDKGKITH---------- 125

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              G   DVS +     +L    E L     N+   ++I D     ++   S   L   D
Sbjct: 126 -IQGFITDVSAKKQAEAELREKTERLNSIAENMLDMVSITDLEGRFKYVGPSHAVL-GYD 183

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           L +L        ++EF+   +    + ++        +  +   + +  +   +G+ + +
Sbjct: 184 LDYLPGR----NVMEFVHPDDYKEVETSF----GEFLACREDGRSVEYRYRRADGEYVWL 235

Query: 403 IVTS---NPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE---------- 445
                    + G     ++   ++T +   E             ++ + E          
Sbjct: 236 ETFGKFILDQDGAAREILFSTRDVTERRQAEQALRESETRVRTKLEAILEPYEDLGGLEL 295

Query: 446 ----------------------GVAVFGPDGRIK-------------------LSN---- 460
                                 G A+    GR+                    L+N    
Sbjct: 296 GDILDTRTVQDFMDDFYYLTNIGGAIVDLKGRLLASTGWQEICVNFHRAHPDALANCRES 355

Query: 461 ---------PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE- 510
                    P    L+K + N     T I          Y     +D     I +F D+ 
Sbjct: 356 DLMLSSGLTPGQFKLYKCKNNMWDMATPIVVGGHHLGNLYIGQFVFDDEELDIETFRDQA 415

Query: 511 ----------RKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKN 559
                      ++L     L  D+V          A  + +   +  +  R+        
Sbjct: 416 GKYGFDQEAYIRALHKVRRLDRDTVNRAMQFYSRFAMLISSLSWSNLELARSVHEQKVAT 475

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +    A++ K+ F+ ++S+E+R+P+  I+G   LL++++   L+ +Q +Y      S++ 
Sbjct: 476 QQADVANKAKSEFLANMSHEIRTPINGIMGILQLLQSTE---LSPEQQEYTNMGIVSASR 532

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L++DILDL+ ++AG M++    + L  L + V +       E +I ++   D  L  
Sbjct: 533 LTRLLSDILDLSRIEAGQMEIRKEQVDLKKLCDSVDELFMVTSREKDISLEFTQDPCLPQ 592

Query: 680 F-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIPED 733
             + D  RL QI   ++ NA+ F+ +G  + +          +   + +V + G  + +D
Sbjct: 593 VLLGDEARLQQIVFNLVGNALKFTQEG-RISVNWHLQQRRGRDARVLLTVSDTGIGMTDD 651

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +F  F    +    + +G GLGLSIV+  + L  G +++ S+    +T    +P 
Sbjct: 652 TLDELFKPFAQAENAFTRRYQGAGLGLSIVKRLVELMHGTLAVDSTPGQGSTFFVSLPL 710



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 93/277 (33%), Gaps = 18/277 (6%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           V D L    EIL +  V I            N +   +   D    +++   D + +   
Sbjct: 15  VQDDLQDCLEILRDAPVGIFTSTPGGRFLSVNPAMARMLGYD----SSHDLIDSITDI-- 68

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWM- 415
           SA    + L+   +   +    +    H+      +G  L V     +  N +G    + 
Sbjct: 69  SAQVYIDPLDRMEFIRLLEEQVE-VFNHECRIRRRDGTVLWVAQNARLVRNDKGKITHIQ 127

Query: 416 --FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               +++ +   E +     +      +++ + V++   +GR K   P+   L    +  
Sbjct: 128 GFITDVSAKKQAEAELREKTERLNSIAENMLDMVSITDLEGRFKYVGPSHAVL--GYDLD 185

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             PG ++            E+   +  A        E +  +   E +        I+  
Sbjct: 186 YLPGRNVMEFVHPDDYKEVETSFGEFLACREDGRSVEYRYRRADGEYVWLETFGKFILDQ 245

Query: 534 PNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             A  + + +  +VT+  +AE+AL E    +R   E 
Sbjct: 246 DGAAREILFSTRDVTERRQAEQALRESETRVRTKLEA 282


>gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 810

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 173/421 (41%), Gaps = 25/421 (5%)

Query: 387 THKDTWHLPNGQTLHVIVT---SNPRGGTIWMFEN--LTVQVDLETKYNTLVKVQGETID 441
           T +      +G T  +  T   +   G    +  +  ++   + E   + +       ++
Sbjct: 104 TGESLHRRKDGSTFMIEFTVTHTLIDGVPCAIGFDRAISAGTEQENTLHEIGNRWMNAME 163

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESDGWDLF 500
              EG+  F     I  ++  ++S+              I        R   + +  D+ 
Sbjct: 164 SSDEGIWDFDVPNGIVWTSHRWQSILGYPPLPKEYQIEEITERVHPDDRNQFQQNLNDVR 223

Query: 501 AAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           ++     D E +    Q T   L               + + +  +VT   R E+AL   
Sbjct: 224 SSQTKRLDIEVRFQNSQNTWTWLRLRGKVAHDSHGDANRLLGSMTDVTQRKRDEQALQVA 283

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +    A+  K+ F+  +S+E+R+P+  ++G   LL ++K   L+ +QS Y+  I +S  
Sbjct: 284 RDKAESANRAKSQFLAVMSHEIRTPMNGVMGMAALLASTK---LDEEQSAYLRTIESSGE 340

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LLN+++++L  + ++AG ++L  +   + + L    Q I+    E  + + +  D  L 
Sbjct: 341 SLLNIIDEVLSFSKLEAGNIELEQNAFNIGECLTSALQIISPMAKEKGLELILNIDSSLP 400

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------FIFSVKNNG 727
              + D  ++ Q+   +L NA+ F+  G  + L+A  +N +             +V++ G
Sbjct: 401 LQVIGDESKIKQVLVNLLGNAVKFTHAGE-IELRAKAENHEDPTTGENTKLIKLTVRDTG 459

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  KS+F  F        RR  G GLGL+I  S + L GG + I S+    +T  
Sbjct: 460 IGISPDAIKSLFEPFTQEDASTTRRYGGTGLGLAISRSLLELMGGAIEIDSAPGEGSTFT 519

Query: 786 C 786
           C
Sbjct: 520 C 520


>gi|197118247|ref|YP_002138674.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197087607|gb|ACH38878.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 460

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 91/363 (25%), Positives = 160/363 (44%), Gaps = 25/363 (6%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +           +  + EG+ V  P G I L NPAF+ L+   +     G  + +I+   
Sbjct: 103 RLEAEKNRLDAILRGMGEGIMVADPQGCITLVNPAFKGLFGLHDEV--EGRLLIDISR-- 158

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                     + F  I++S  +  + LQ  L    +  L    +PL     +   V    
Sbjct: 159 -----HPALHESFRDILSSRQERVEELQ--LHSPKERSLLVHWVPLVECGVVTGVV---- 207

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                 A+      LR+ ++++  FV +VS+ELR+P+T I G+ + L    L     + +
Sbjct: 208 ------AVFHDISDLRQMEKMRRDFVANVSHELRTPITIIKGYAETLLAGALEHPT-QAT 260

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V  + + +  L +LV+D+L L+ +++G + L   ++ + ++   V   +  K+ E  I
Sbjct: 261 KFVSIVHSHADRLASLVSDLLTLSQLESGAVPLEARSVKVQEIAERVVVLLERKIRERGI 320

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + +       S +AD  RL Q+   +L NA+ ++  G +V L AA        +V++ G
Sbjct: 321 IVDLAGLKDAPSVMADPGRLEQVIVNLLDNAVKYTPAGGSVTLSAADREESVTIAVQDTG 380

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +F RF        R   G GLGLSIV+  + L GG VS  SS    +T  
Sbjct: 381 IGIPSKDLSRIFERFYRVDSARSRDEGGTGLGLSIVKHIVQLQGGTVSAQSS-GQGSTFF 439

Query: 786 CRI 788
             +
Sbjct: 440 VTL 442



 Score = 44.5 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 22/194 (11%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
             L    ++     +S + K    T       + +  ++ RV+N       A    +   
Sbjct: 49  ADLGTRPLRAVAAMASRIGKGEINTKLPAVT-DPQVTELARVINEMAAKANA----QLDR 103

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +  +      IL  +   I + D    +   N +F  L+      L        L++  R
Sbjct: 104 LEAEKNRLDAILRGMGEGIMVADPQGCITLVNPAFKGLFG-----LHDEVEGRLLIDISR 158

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWMF 416
                      +++++ + S  +  E  +   H P  ++L V            G + +F
Sbjct: 159 H------PALHESFRDILSSRQERVE--ELQLHSPKERSLLVHWVPLVECGVVTGVVAVF 210

Query: 417 ENLTVQVDLETKYN 430
            +++    +E    
Sbjct: 211 HDISDLRQMEKMRR 224


>gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1313

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 146/865 (16%), Positives = 285/865 (32%), Gaps = 115/865 (13%)

Query: 1    MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSL---AKKVNE 57
            ++A   T+  G G    +           I G L  T+I  I L R+R ++   AK   E
Sbjct: 204  ILAWRETMNAGGGPPAWSPMP-------AIVGCLTFTLILWIGL-RERETVYLGAKTQTE 255

Query: 58   TYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE----------------IIGQLHQ 101
              S  +    +  +  + +     L  +W     T E                 +G L  
Sbjct: 256  MDSLATSFKYEFDRQAAAIE---RLARMWADGALTAEAVWEVDAGSQWQDSSGRLGILSI 312

Query: 102  RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI----KIEG 157
             +  P+  T  +      +    I L  A + +R   Q+    A       I    ++ G
Sbjct: 313  AVLNPELRTIWVYPRE--ENATAISLDHAMDPVR---QAAIAAARINRGPVISGTTELGG 367

Query: 158  RVSGS---CAFLRILSLDGIYSE-----------LAETTLKCKKLSN----HISVFKVLF 199
            R  G       +R     G  +            +AE  ++   L          ++ + 
Sbjct: 368  RGHGVVIYAPIIRQGVASGYVAAEFLYRTFFSSVIAERKIEDGHLVEVKIGAEEAYRTVL 427

Query: 200  DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE 259
                     R  A  I      + +          +A+   R+   E     +   + + 
Sbjct: 428  ----QPKEQRHDALLIDKTYPMFDRRVRVTMTPRTEALQNDRRYLPE-----LALGAGIG 478

Query: 260  KNFCETVST-LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
                  +S  L  G         + N    A        E  +          L +  + 
Sbjct: 479  IALLLGLSVHLARGARAGQHAAELSNKKLHAENEERRRIEARLKVSDERLRLALDSTQIG 538

Query: 319  IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
            I  ++      +++     +   + + ++           + +   L    +  T++  +
Sbjct: 539  IFEWNVAAGHVYYSSGLWAMLGYEHSRMSAT---------VAAWQSLIHPDDLPTYRRRV 589

Query: 379  FSVY----------KSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLET 427
             S               ++H   W     ++  V  +++ R    I   +++T + + E 
Sbjct: 590  DSQLNGVASFIEPEFRVKSHGGEWRWVYTRSKTVAASTSGRPTRIIGTVQDITARREAEQ 649

Query: 428  KYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                     +            V +  P G I+  N +F  + +   + +   + I  +A
Sbjct: 650  ALRESQAETRKLSLVAAKTDNPVLIISPAGSIEWVNESFSRVMEYSLDEVVGRSPIDFVA 709

Query: 485  ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-----AQTM 539
            A       ++       A I         +    +      L   + P+ N        +
Sbjct: 710  AAE----TDARTLQEIDAAIAQGRAHSGDVVTHSKRGRKYHLRVELQPVRNDAGQLQNFI 765

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            +   ++T  V  E AL        +A   K+ F+  +S+E+R+P+  +IG T LL  +  
Sbjct: 766  VIETDITARVDTELALRRAKTEADEASRAKSDFLASMSHEIRTPMNGVIGMTSLLMET-- 823

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              L+ +Q  +V  I  S   LL ++NDILD + +++G M L +    L   L E     A
Sbjct: 824  -DLSPEQRDFVNTIRTSGEALLTIINDILDFSKIESGKMDLEHLPFELATCLEESLDLFA 882

Query: 660  TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +    ++ +       +    + D  RL QI   +++NA+ F+S GS + ++  R    
Sbjct: 883  LQASAKHLELAYHIAPDVPEWIIGDITRLRQIVVNLVNNAVKFTSAGS-IAIEVRRRPPT 941

Query: 719  F---------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                       F V++ G  IP +    +F  F        R   G GLGL+I +    L
Sbjct: 942  VPANLKRFPLEFVVRDTGIGIPAERLDRLFKAFSQVDSSTTRKYGGTGLGLAICQRLSIL 1001

Query: 768  HGGHVSISSSDEGVTTINCRIPSKE 792
             GG + + S     ++    I ++E
Sbjct: 1002 MGGGIRVESKVGEGSSFIFTITTEE 1026


>gi|160887321|ref|ZP_02068324.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
 gi|156107732|gb|EDO09477.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
          Length = 657

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 100/453 (22%), Positives = 191/453 (42%), Gaps = 32/453 (7%)

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKS------------SETHKDTWHLPNGQTLHV 402
           L E + S  +     + + +K+    +  S             E  K  W   +  +   
Sbjct: 85  LFEDIDSFYRFVHPDDTEAYKQAFAEMLSSDSKTSQIRVRCIGEQGKVVWLEDHFLSYKE 144

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              S+P     +   N+T Q + E     L +   + I+ L E          I + +  
Sbjct: 145 SCKSHPGKVLAYTV-NVTSQCEKEQHIKYLEEYNRKIIEALPE---------FIFIFDDN 194

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL 520
           F                +  +     R     +  DLF   I     D + K ++  +E+
Sbjct: 195 FFITDVLMAPGTILLHPVEVLRGADGRSIYSPEVSDLFICNIRECLQDGQLKEIEYPVEV 254

Query: 521 LSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                  +  I P    + +    ++ D ++  + L E       AD++K+ F+ ++S+E
Sbjct: 255 DGGVHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHE 314

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++++  ++      ++ +Y+E I  +S +LL L+NDILDL+ +++G  +
Sbjct: 315 IRTPLNAIVGFSEIIAVTEG---EEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSE 371

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +++  + +  L+ EV++    KM   N+ +KVI          DR R++Q+    LSNA+
Sbjct: 372 MHFQQVEIAGLVEEVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAI 430

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             + KGS + L    +       V + G  I ++    +F RF       Q  G GLGLS
Sbjct: 431 KNTEKGS-ITLGLKHEGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ--GTGLGLS 487

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +S +   GG + ++S     +     +P +E
Sbjct: 488 ICKSIVERLGGRIEVTSELGQGSVFALYLPYQE 520


>gi|220907215|ref|YP_002482526.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863826|gb|ACL44165.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1501

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 115/681 (16%), Positives = 233/681 (34%), Gaps = 82/681 (12%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKN- 225
            I ++  + +++ E       L       ++   +     W  D   G   W+   +    
Sbjct: 698  ITTVLAVATDVTEYKRTELLLRQSEERLRLAMAAAQMATWDVDLNTGKAFWSEHHFTMLG 757

Query: 226  -TETEGIVFQKAIGES---RKLFKEEIKKRMISSSALEKNFCE-TVSTLEHGNNKS---- 276
                 G    +A+  S    +  +  ++    +         E  V  +++G        
Sbjct: 758  YEPVAGGEASEAMWSSCIHPEDLERVLQAWQQARLDRTLYRAEYRVIRVDNGQIAWLMGL 817

Query: 277  --YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
              +       +    G+ +D+S++     +     + L             + LQ   ++
Sbjct: 818  GSFTYDETGQAIRSIGVLLDISEQQAALQERKRVEDELRE---------SEQRLQLAQQA 868

Query: 335  FVELWEIDLAFL-------------------ATNPSNDELLEFLRSANK----------L 365
               +   D   L                   +  P  +    F+   ++          L
Sbjct: 869  -GRIGTWDWNLLTNEVSWSDGIWPLLALEPKSVKPDLETFTHFIHPEDREQAFRTVKLAL 927

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQ 422
             E  ++     + F V +        W L  G+ +       P G     + +  ++T +
Sbjct: 928  AEGDDYY----DEFRVIRQDGAIC--WLLSKGRVIR-----TPEGQPQRLLGINVDITDR 976

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
               E       +     +     G+  +   + +I  S   ++    T +          
Sbjct: 977  KQAEEALRQSEERLRLALLVSQSGIWDWDIVNKQITWSERIYQFHGLTPDTFGGTVAEFA 1036

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLS---DSVLEYSIIPLPN- 535
             +     R    +      A   +S++ E +++Q  G +  LS     + +    P+   
Sbjct: 1037 ALIHPEDRERVAAAIQRALAG-ESSYELEFRAVQPSGAIRWLSTTGGVIFDQQGQPVRML 1095

Query: 536  AQTMLTFVNVTDSVRAERAL---TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              T             ER L       EA   A+ IK+ F+  +S+ELRSPL  I+G+T 
Sbjct: 1096 GATNDITDRKAIEAERERLLLSERRCREAAESANRIKDEFLAVLSHELRSPLNPILGWTK 1155

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL+T       ++Q+  ++ I  ++ +   L+ D+LD++ +  G M LN S + L   + 
Sbjct: 1156 LLQTRPFDPQRTQQA--LQTIERNAKLQTQLIEDLLDISRILQGKMVLNTSPVNLITTIE 1213

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                ++        I ++      +G    D  RL QI   +L+NA+ F+  G  V+++ 
Sbjct: 1214 AALDTVRLAAETKGIELQTCLSPAVGRVYGDSTRLQQIVWNLLTNAVKFTPAGGKVLIRL 1273

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
             + +      V++ G  I       VF  F     +  R   G+GLGL+IV      HGG
Sbjct: 1274 EQVDSFAQIQVQDTGKGISPAFLPHVFEYFRQEDSQTTRKFGGLGLGLAIVRYLTEQHGG 1333

Query: 771  HVSISSS-DEGVTTINCRIPS 790
             V + S  ++   +    +P 
Sbjct: 1334 TVEVESRGEDQGASFTVHLPL 1354



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 78/537 (14%), Positives = 160/537 (29%), Gaps = 88/537 (16%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            + S D  ++ L         L   +S+       +  LVW RD     L+ N  Y    
Sbjct: 20  WLQSQDWDHTALGSVANWPLSLQTSLSILLNTACPM-VLVWGRD---RYLFFNDGYANLG 75

Query: 227 ETEGIV--FQKAIGESRKLFKEEIKKRMISSSALEKNFCETV-STLEHGNNKSYKIVRVL 283
              G      + +    +    E+   +       +   + + S    G          L
Sbjct: 76  LNSGPTLIPGQPLHNCSQPNGGELLTAIEQVFTTAQPQQQVLASQGMSGEQLWLWCFSPL 135

Query: 284 NSFGEAG--IAIDVSK------------------------EITVNDQLTHTYEILHNLTV 317
              G+ G   A   ++                           +  +      +L  L  
Sbjct: 136 WDGGQVGGVFATGCAELNPIAGTTKLEAECRQVETERQHLSEALLSEKARFEAVLRQLPE 195

Query: 318 AIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF--LRSANKLPEQLNWKTW 374
            + I D     L   N    +L     A      + +  + F   R+  +     ++   
Sbjct: 196 GVMIADAATGNLILTNERADQLMRHSYALDFQLEAYESWVPFQAYRTNGQRYAPEDYPLV 255

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLE- 426
           +       +     +      +G  + + V + P    +G     + +F++++ +  LE 
Sbjct: 256 RS--LRQGEIIAHEEMELRFADGSQIFIDVNAAPILDYQGQITSAVTVFQDISERKQLEA 313

Query: 427 TKYNTLVKVQ------GETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGT- 478
            +   L+++Q       +  D     + V+     R    N     L       +     
Sbjct: 314 ERQQALIQLQERQHFIQQVADATPGTLYVYDMVAQRNIYVNRQIGELLGYTPADIQAYDD 373

Query: 479 -------HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                  H  ++A   ++Y   +      A  +  ++   +   G    L       +  
Sbjct: 374 QLFAQLIHPEDLATIGNQYTRLNQAQ---ADEVIDYEYRMRHANGEWRWLWSRNTVSTRT 430

Query: 532 PLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL---------- 580
           P   A   + T  ++TD  +AE AL +    L++A+E +          L          
Sbjct: 431 PEGLAHLVVGTVQDITDRKQAELALQQTQVHLQRANE-RFELAAKAVNCLIYDWDVEQDR 489

Query: 581 --RSPLTNIIGFTDLL-----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             R+      GFT LL     +    G+   +Q    +    S+T + NL+N+ L +
Sbjct: 490 VERT-----EGFTRLLGYSLEEAEPTGAWWRQQIHPEDVQRLSATAISNLLNNDLQI 541



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/581 (11%), Positives = 159/581 (27%), Gaps = 83/581 (14%)

Query: 50  SLAKKVNETYSFLSEICDQL----SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
            L  +  +  +    + + L    +++ ++L +     ++ D       +  +   ++  
Sbjct: 160 KLEAECRQVETERQHLSEALLSEKARFEAVLRQLPEGVMIADAATGNLILTNERADQLMR 219

Query: 106 PQTDTDLL--SFENWLKFHHYIKLSKA--------TEKLRKE------------GQSFDL 143
                D    ++E+W+ F  Y    +            LR+                  +
Sbjct: 220 HSYALDFQLEAYESWVPFQAYRTNGQRYAPEDYPLVRSLRQGEIIAHEEMELRFADGSQI 279

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
             +      +  +G+++ +        +       AE      +L       + + D+  
Sbjct: 280 FIDVNAAPILDYQGQITSAVTV--FQDISERKQLEAERQQALIQLQERQHFIQQVADATP 337

Query: 204 FLVWHRD-QAGDILWANISY--------KKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
             ++  D  A   ++ N                 +  +F + I             R+  
Sbjct: 338 GTLYVYDMVAQRNIYVNRQIGELLGYTPADIQAYDDQLFAQLIHPEDLATIGNQYTRLNQ 397

Query: 255 SSALEKNFCETVSTLEHGNNKSYK---IVRVLNSFGEAGIAI----DVSKEITVNDQLTH 307
           + A E    E      +G  +       V      G A + +    D++        L  
Sbjct: 398 AQADEVIDYEYRMRHANGEWRWLWSRNTVSTRTPEGLAHLVVGTVQDITDRKQAELALQQ 457

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEIDLAFLATNPSNDELLEFLRSANK 364
           T   L            N   +   ++   L   W+++   +        LL +      
Sbjct: 458 TQVHLQR---------ANERFELAAKAVNCLIYDWDVEQDRVERTEGFTRLLGYSLEE-- 506

Query: 365 LPEQLNWKTWKENIF--SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE----- 417
              +     W++ I    V + S T        + Q     V +        + +     
Sbjct: 507 --AEPTGAWWRQQIHPEDVQRLSATAISNLLNNDLQICEYRVRTKDNRYIYVLDQALVVC 564

Query: 418 ---------------NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                          ++T +   E +     +     +++  + +  +  + R    NP+
Sbjct: 565 RDAKGYPTRMVGSTTDITDRKRAEAQLQQQEQEFRTLVENTPDVIIRYDRNLRYLYINPS 624

Query: 463 FRSLWKTEENRLSPGTHIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
              +      +L   T I   +    S+ +  +             + E  + +G L   
Sbjct: 625 IERIIGIPPEQLIGKTGIELGLIDPTSQAWYRTLEQVFNTGQHHWLEFEFPNPEGELHAY 684

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +   +        +    +VT+  R E  L +  E L
Sbjct: 685 QARFVPELVEGEQITTVLAVATDVTEYKRTELLLRQSEERL 725



 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 63/540 (11%), Positives = 142/540 (26%), Gaps = 71/540 (13%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP----EIIGQLH 100
           I +R  L  +  +    L E    + +             V+D   +        IG+L 
Sbjct: 305 ISERKQLEAERQQALIQLQERQHFIQQVA---DATPGTLYVYDMVAQRNIYVNRQIGELL 361

Query: 101 QRIDIPQTDTDLLSFENWLKFHHYI-------KLSKATEKLRKEGQSFDLVAETQNDCAI 153
                     D   F   +             +L++A      + +     A  +     
Sbjct: 362 GYTPADIQAYDDQLFAQLIHPEDLATIGNQYTRLNQAQADEVIDYEYRMRHANGEWRWLW 421

Query: 154 K---IEGRVSGSCA---FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
               +  R     A      +  +                L      F++   +++ L++
Sbjct: 422 SRNTVSTRTPEGLAHLVVGTVQDITDRKQAELALQQTQVHLQRANERFELAAKAVNCLIY 481

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE---KNFCE 264
             D   D +     + +         +      R+    E  +R+ +++       +   
Sbjct: 482 DWDVEQDRVERTEGFTRLLGYSLEEAEPTGAWWRQQIHPEDVQRLSATAISNLLNNDLQI 541

Query: 265 TVSTLEHGNNKSYKIVRVLN---------SFGEAGIAIDVSKEITVNDQLTH----TYEI 311
               +   +N+   ++                  G   D++       QL         +
Sbjct: 542 CEYRVRTKDNRYIYVLDQALVVCRDAKGYPTRMVGSTTDITDRKRAEAQLQQQEQEFRTL 601

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           + N    I  +D+N    + N S   +  I    L            +      P     
Sbjct: 602 VENTPDVIIRYDRNLRYLYINPSIERIIGIPPEQLIGKTG-------IELGLIDPTS--- 651

Query: 372 KTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVTSNPR-------GGTIWMFENLTVQ 422
           + W   +  V+ + + H   +  PN  G+         P           + +  ++T  
Sbjct: 652 QAWYRTLEQVFNTGQHHWLEFEFPNPEGELHAYQARFVPELVEGEQITTVLAVATDVTEY 711

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              E       +     +      +A +  D          ++ W      +     +  
Sbjct: 712 KRTELLLRQSEERLRLAMAAAQ--MATWDVDLN------TGKAFWSEHHFTMLGYEPVAG 763

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
             A+ + + +     DL   ++ ++   R  L  TL        EY +I + N Q     
Sbjct: 764 GEASEAMWSSCIHPEDL-ERVLQAWQQAR--LDRTLYRA-----EYRVIRVDNGQIAWLM 815


>gi|298241186|ref|ZP_06964993.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297554240|gb|EFH88104.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1221

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 140/791 (17%), Positives = 289/791 (36%), Gaps = 93/791 (11%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW-DGKDETPEIIGQ-LHQR 102
            +R       K   T + + +     ++   L+        VW  G D +     Q L   
Sbjct: 477  VRDEAGQIVKWFGTCTDIHDKKQAEAELRVLIDAIPQ--FVWIAGPDGSITYNNQRLIDF 534

Query: 103  IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGS 162
            + +     +   +   +      ++ +A +   + G  +++    Q+  +          
Sbjct: 535  LAMTHEQAEGAGWMAGVHPDDRQRVWEAWQTSIETGVPYEVEHRLQDGTS---------- 584

Query: 163  CAFLRILSLDGIYSELAETTLKC--------KKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
             A+   L + G+    A+ T+                    + L D++  LVW     G 
Sbjct: 585  GAYRWFL-VRGVPQRNAQGTILHWVGTCTDIHDKKQAEEELRALIDAIPQLVWTGRPDGY 643

Query: 215  ILWANISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRM----ISSSALEKNFCETVSTL 269
                N  ++  T   G+  + A GE   +    E ++R+      +      +   +   
Sbjct: 644  RDSFNQRWRDYT---GLSTEGAQGEGWLQCLHPEDRQRVLSVWQRAVQTGGVYEIELRLR 700

Query: 270  EH--GNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTV 317
                G  + +  + + V N  G+     G + D+ ++     QL  + E    +   L  
Sbjct: 701  HGTTGEYRWFLARAMPVRNESGQILKWFGTSTDIEEQKRAEQQLKESEENWRVLAETLPQ 760

Query: 318  AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
             +     N  L + N+ + +        + ++      L+F+   ++   + N   W++ 
Sbjct: 761  FVWTMFPNGRLDYLNQRWCDYTGFTPEHMQSDRWAH--LQFIHPDDR---EGNRALWQQT 815

Query: 378  IFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPR----GGTIWMF---ENLTVQVDLET 427
            +    ++ E  +    L NGQT     V+  + P     G  +  F    ++  Q  +E 
Sbjct: 816  L----ETGEPFESKHRLRNGQTGAYRWVLARAMPVRDETGQIVKWFGTGTDIEDQKRMEE 871

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                  +     ++    G+ +   D +I  +N +F  +       L  G          
Sbjct: 872  ALRQSQERASVLMNSNIIGIFLAEGD-QIVDANDSFLRMTGYTREDLRTGN--------- 921

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE-----YSIIPLPNAQTMLTF 542
                       +    +TS D   ++ Q   EL +   LE     Y          ++  
Sbjct: 922  -----------MSWIRMTSPDYLARTRQAQQELDTQQYLEPYEKEYLCKDGSCFPVLVGS 970

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            V    + R   +    N A ++ ++ K+ F+   S+ELR+PL  +   T L++       
Sbjct: 971  VAFQHNSRQCISFVLDNSARKELEQRKDDFISMASHELRNPLAALKMQTQLVRKRLEKQS 1030

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + + +  +  +      L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++    
Sbjct: 1031 HHEAATALFRMEGPVKQLERLIGELLDVSKIQAGKLEYRQETVDLDALLHEVADTMQQLS 1090

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + I   V+      S V D+ RL Q+F+ ++SNA+ +S     V +         I  
Sbjct: 1091 TTHAI---VVRGAAPSSLVGDKDRLGQVFTNLISNAIKYSPGAEMVEMDLDASPETAIIR 1147

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V ++G  IP++ C  +F RF       Q+   G+G+GL IV   +  HGG +++ S    
Sbjct: 1148 VHDHGLGIPQEQCDKIFERFYRATGPKQKAIPGLGMGLYIVAEIVKRHGGAITVDSEVGK 1207

Query: 781  VTTINCRIPSK 791
             +T    +P K
Sbjct: 1208 GSTFTVTLPCK 1218



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 71/557 (12%), Positives = 168/557 (30%), Gaps = 76/557 (13%)

Query: 60  SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQ--LHQRIDIPQTDTDLLSFEN 117
             ++E      +   L+       +VW  + +              D+          + 
Sbjct: 245 RDITERKHAEDELRVLIDAIPQ--LVWMARPDGSREYSNRRWCDSTDMTAEQYQG---DG 299

Query: 118 WL---KFHHYIKLSKATEKLRKEGQSFDLVAETQNDC-------AIKIEGRVSGSCAFLR 167
           WL         ++ +  ++  +  + ++     ++          ++           L+
Sbjct: 300 WLQAIHPDDQQRILEVWQRAVQTDRPYETELRLRHGTTGAYRWFLVRAMPYKDDQGTILK 359

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
                G  +++ E     +KL      ++VL +++  LVW     G + + N  +     
Sbjct: 360 WF---GTCTDIEEQKRAEQKLKESEENWRVLAETVPQLVWTTSPDGSVEYWNQRWYD--- 413

Query: 228 TEGIVFQKAIGESRKLFKEEIKKR-------MISSSALEKNFCETVSTLEHGNNKSY--K 278
             G   + A+G     F                 +S         +   + G  + +  +
Sbjct: 414 YSGSSPEHALGHGWSQFLHPDDLEHTLTVWHHALASGEAYEIEYRLRDDQTGAYRWFLAR 473

Query: 279 IVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
              V +  G+     G   D+  +     +L     ++  +   + I   +  + ++N+ 
Sbjct: 474 GTPVRDEAGQIVKWFGTCTDIHDKKQAEAELRV---LIDAIPQFVWIAGPDGSITYNNQR 530

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
            ++       FLA      E   ++   +    Q  W+ W+ +I    ++   ++    L
Sbjct: 531 LID-------FLAMTHEQAEGAGWMAGVHPDDRQRVWEAWQTSI----ETGVPYEVEHRL 579

Query: 395 PNGQT-------LHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +G +       +  +   N +G     +    ++  +   E +   L       ID + 
Sbjct: 580 QDGTSGAYRWFLVRGVPQRNAQGTILHWVGTCTDIHDKKQAEEELRAL-------IDAIP 632

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           + V    PDG     N  +R               ++ +     +       W       
Sbjct: 633 QLVWTGRPDGYRDSFNQRWRDYTGLSTEGAQGEGWLQCLHPEDRQRV--LSVWQRAVQTG 690

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKN 559
             ++ E +   GT             +P+ N      +   T  ++ +  RAE+ L E  
Sbjct: 691 GVYEIELRLRHGT--TGEYRWFLARAMPVRNESGQILKWFGTSTDIEEQKRAEQQLKESE 748

Query: 560 EALRKADEIKNSFVQHV 576
           E  R   E    FV  +
Sbjct: 749 ENWRVLAETLPQFVWTM 765



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/444 (11%), Positives = 135/444 (30%), Gaps = 77/444 (17%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
              LS +  +++ L +S    V      G +L  N    +      +  ++ +G      
Sbjct: 125 QDALSRNEQMYRDLLESFSDGVTIVTPDGLVLDINQ---RPLADAHLRREQVVGTPLTDL 181

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA------------ 292
                  ++               +     + +    +         A            
Sbjct: 182 PAWSSDLVVQEHLRAAIARARQGEIVRFEARIHPRTDLSLDILMTITAHRDASQQIEYLI 241

Query: 293 ---IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA----- 344
               D+++     D+L     ++  +   + +   +   ++ NR + +  ++        
Sbjct: 242 CAGRDITERKHAEDELRV---LIDAIPQLVWMARPDGSREYSNRRWCDSTDMTAEQYQGD 298

Query: 345 -FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---L 400
            +L     +D             +Q   + W+  +    ++   ++    L +G T    
Sbjct: 299 GWLQAIHPDD-------------QQRILEVWQRAV----QTDRPYETELRLRHGTTGAYR 341

Query: 401 HVIVTSNP---RGGTIW----MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
             +V + P     GTI        ++  Q   E K     +      + + + V    PD
Sbjct: 342 WFLVRAMPYKDDQGTILKWFGTCTDIEEQKRAEQKLKESEENWRVLAETVPQLVWTTSPD 401

Query: 454 GRIKLSNPAFRSLWK-TEENRLSPG----THIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           G ++  N  +      + E+ L  G     H  ++  T + +++     + +       D
Sbjct: 402 GSVEYWNQRWYDYSGSSPEHALGHGWSQFLHPDDLEHTLTVWHHALASGEAYEIEYRLRD 461

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--- 565
           D+  + +  L   +    E   I     +   T  ++ D  +AE  L    +A+ +    
Sbjct: 462 DQTGAYRWFLARGTPVRDEAGQI----VKWFGTCTDIHDKKQAEAELRVLIDAIPQFVWI 517

Query: 566 ----------DEIKNSFVQHVSYE 579
                     ++    F+  +++E
Sbjct: 518 AGPDGSITYNNQRLIDFLA-MTHE 540



 Score = 64.6 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 115/405 (28%), Gaps = 37/405 (9%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEEIKKR 251
                + ++L   V+  D    I++AN S +  +  T   V   ++             +
Sbjct: 16  ETLLHMLETLPDAVFVVDDTETIVYANASAQTLSRTTREEVCGTSLWCGAPHLVSPSLYQ 75

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI----AIDVSKEITVNDQLTH 307
            +   A +      V  +    N    +       G A            +  ++     
Sbjct: 76  AV-HKAKQTREPTEVEYVSPATNSWLHVSLSPTDEGLALFFHKNLEPPHFQDALSRNEQM 134

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNR--------SFVELWEIDLAFLATNPSNDELLEFL 359
             ++L + +  + I   +  +   N+           ++    L  L    S+  + E L
Sbjct: 135 YRDLLESFSDGVTIVTPDGLVLDINQRPLADAHLRREQVVGTPLTDLPAWSSDLVVQEHL 194

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R+A         +  +  I           D               S      I    ++
Sbjct: 195 RAA-------IARARQGEIVRFEARIHPRTDLSLDILMTITAHRDASQQIEYLICAGRDI 247

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T +   E +   L       ID + + V +  PDG  + SN  +         +      
Sbjct: 248 TERKHAEDELRVL-------IDAIPQLVWMARPDGSREYSNRRWCDSTDMTAEQYQGDGW 300

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-- 537
           ++ I     +   E   W         ++ E +   GT    +        +P  + Q  
Sbjct: 301 LQAIHPDDQQRILE--VWQRAVQTDRPYETELRLRHGT--TGAYRWFLVRAMPYKDDQGT 356

Query: 538 ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                 T  ++ +  RAE+ L E  E  R   E     V   S +
Sbjct: 357 ILKWFGTCTDIEEQKRAEQKLKESEENWRVLAETVPQLVWTTSPD 401


>gi|86750547|ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris HaA2]
 gi|86573575|gb|ABD08132.1| histidine kinase [Rhodopseudomonas palustris HaA2]
          Length = 771

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 98/442 (22%), Positives = 182/442 (41%), Gaps = 42/442 (9%)

Query: 388 HKDTWHLPNGQTLHVIV-------TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
           H       NG  + + +       T +     I +  ++T Q  L  +         + I
Sbjct: 322 HSFRMRHANGHWIWLRMRCELSQETQSDNKHLIGIAVDVTEQKSLAERTVEADLRLRDAI 381

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA----------TCSRY 490
           + + E   ++  D R+ L N  F+ L K  +  ++PGT    +             C   
Sbjct: 382 ETIPEAFVLWDADNRLVLCNSHFQRLHKLPDIAVAPGTSYETVIEVGQMPEIRTRLCDNS 441

Query: 491 YNESDGWDLFAAIITS----FDDERKSLQGTLELL----------------SDSVLEYSI 530
              S G   F A +         ER++  G    +                +D  L  ++
Sbjct: 442 GGSSPGARTFEAQLADGSWLHISERRTKDGGYVAVGTDITRIKAHEQKLVDNDLRLRATV 501

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             L  +Q         +     R  +E+     +A++ K+ F+ ++S+ELR+PL  IIGF
Sbjct: 502 ADLKISQ-YKLERQAIELADLARKYSEEKTRAEEANQTKSKFLANMSHELRTPLNAIIGF 560

Query: 591 TDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           ++++ +   G+L + K  +Y   I  S   LL ++NDILD++ ++AG M+L+   + L  
Sbjct: 561 SEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLDMEELDLAR 620

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            L E  + +A +     + +    +  +   VADR+ + QI   +LSNA+ F+  G  V 
Sbjct: 621 TLGESLKVVAGRAEHKQLELLSEIEDDIP-IVADRRAVKQILINLLSNAVKFTPDGGRVT 679

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           +++       +  + ++G  I     + +   F            G GLGL+I +S   L
Sbjct: 680 VRSRTLPNAIVLMIADSGIGIAPQSLRRLGQPFEQVESQLSKTYHGSGLGLAIAKSLTTL 739

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG + + S+    T +   +P
Sbjct: 740 HGGSMRLRSTLGAGTVVMVTLP 761



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 16/161 (9%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++ ++ ++         + +  +  A  ++D +  L   N  F  L ++   
Sbjct: 354 IGIAVDVTEQKSLAERTVEADLRLRDAIETIPEAFVLWDADNRLVLCNSHFQRLHKLPDI 413

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHV 402
            +A   S + ++E      ++PE       +  +      S     T+   L +G  LH+
Sbjct: 414 AVAPGTSYETVIEV----GQMPEI------RTRLCDNSGGSSPGARTFEAQLADGSWLHI 463

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                  GG + +  ++T     E K          T+  L
Sbjct: 464 SERRTKDGGYVAVGTDITRIKAHEQKLVDNDLRLRATVADL 504


>gi|298528358|ref|ZP_07015762.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512010|gb|EFI35912.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1012

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 173/392 (44%), Gaps = 26/392 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +   L  +   E       +      D   + + + GPDG I   NP   S++      +
Sbjct: 421 LNNELAERRRAEESLRESQERMQAVTDSAHDAIIMMGPDGEISYWNPMAESIFGYTAQEV 480

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEY---- 528
             G  + ++ A    + + +     F         +  ++  T+EL  +    LE     
Sbjct: 481 -MGKSLHHLLAPERYHTDITKAMPEFQR-----TGQGNAVGKTIELSAIGKDGLEIPISL 534

Query: 529 ---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
              S++       +    +++    AE+ L +  E    A+  K+ F+ ++S+ELR+P  
Sbjct: 535 SMSSVLLQGRWHAVGIARDISRRKAAEKELIQAKEQAEAANIAKSKFLANMSHELRTPFN 594

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G   LL+T+    LN +Q ++V     SS   + L+ DIL+L+ ++AG M +  +  
Sbjct: 595 GIMGMMQLLQTT---DLNDEQQEFVNLAIQSSERFVRLLTDILELSNIEAGKMSICSAEF 651

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
              +LL  +    + +  +  I ++   +  +      D+ R+ Q+   ++ NA+ F+  
Sbjct: 652 RTGELLESLSDLFSAEALKKGIVLEFSMEPDVPEQVSGDKTRVKQVMFTLVGNALKFTES 711

Query: 705 GST-VILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
           GS  V L     A   +    FSV + G  IP+D   ++FN FV        + +G GLG
Sbjct: 712 GSVQVHLTSISGAKGGDTRLKFSVSDTGIGIPDDKLSTLFNPFVQVDGSYTRKYQGAGLG 771

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LS+V+  +++  G++S+ S  +  TT++  +P
Sbjct: 772 LSLVKRLVDMMNGNISVESEVDRGTTVHVVLP 803


>gi|75907850|ref|YP_322146.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
 gi|75701575|gb|ABA21251.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
          Length = 1026

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 120/658 (18%), Positives = 236/658 (35%), Gaps = 69/658 (10%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW-ANISYKKNTETEGI 231
             +Y+EL    +   +L     + + +++     ++  D    ++   N    +  E +  
Sbjct: 391  ALYNELHLRKIAELELRRQKDLCESIYNESADALFLVDPQTLLIADCNRRAVELFEADSK 450

Query: 232  VFQKAIGES---RKLFKEEIKKRMISSSALEKNFCETVSTLEH------GNNKSYKIVRV 282
                +I  +    + F  +   ++ +    +  +   +  L        GN  + ++  V
Sbjct: 451  SELISIKVNTLQLQPFTSDELAQITTQIQQKGVWNTEIQYLTRKGNLFWGNLAAKEVTMV 510

Query: 283  LNSFGEAGIAI-------DVSKEITVNDQLTHTYEILHNLTVA-------IAIF-DQNR- 326
             +        +       D+++       L  +      +  A       +A + D N+ 
Sbjct: 511  CDRPSVITNQVVYLVRVTDITERKRAETALLQSEARFQKIAAASPAQIYILAYYPDINQM 570

Query: 327  YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
              ++ +    E+ E++   +  +P        L      P+  +   + +      K+ +
Sbjct: 571  RYEYISSGVQEIQELEPHQVLADP-------LLTYQQVHPD--DLALYNQLTTRSLKTLK 621

Query: 387  THKDTWHL--PNGQTLHVIVTSNPR----GGTIW--MFENLTVQVDLETKYNTLVKVQGE 438
                 W +  P+G+   V   S P     G   W  +  ++T     E       +    
Sbjct: 622  PFAHEWRIITPSGKVKWVRANSRPERRSNGEIAWYGVVLDITDLKQAEAALRESEERFRH 681

Query: 439  TIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
                   G+A+ G  D +   +NP  R +    E           I        +  D  
Sbjct: 682  AFYDAPIGMALLGLEDQQWLQANPMLREMLGYSELEFFSFQAFEII--------HPEDIH 733

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             L   I     ++   +Q  L  L +         S+  + + Q    +  +      E+
Sbjct: 734  RLENCITQVLSNQNPRVQVELRYLCNGGRIAWGLTSLSLVRDCQNQPLYYVLQIQDITEQ 793

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                        ++IKN F+  VS+ELR+PLT I GF  LL T    + + K    ++  
Sbjct: 794  Q---------AIEQIKNEFISIVSHELRTPLTAIQGFLGLLNTGIYDNKSQKAKWMIQQA 844

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +S  L+ LVNDILDL  + +G ++L        DL+    + + +    + I I +  
Sbjct: 845  LTNSDRLVRLVNDILDLERLSSGRVQLVKEVCHAADLMQRAVEGVQSIALASAITISLT- 903

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                    A    ++Q    +LSNA+ FS   S + L A   +   +F V++ G  IP +
Sbjct: 904  -PTTACVWASPDLIIQTLINLLSNAIKFSPHNSVITLSAQPQSDWVLFKVQDQGRGIPAN 962

Query: 734  MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +++F RF          + G GLGL+I +S I  H G +   S+    +T    +P
Sbjct: 963  KLETIFERFQQVDISDARAKGGTGLGLAICQSIIQQHDGSIWAESTLGEGSTFYFTLP 1020


>gi|167461323|ref|ZP_02326412.1| Sensory box histidine kinase YycG [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381341|ref|ZP_08055344.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154917|gb|EFX47188.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 608

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 148/363 (40%), Gaps = 25/363 (6%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     + ++++GV      GR+ + N   + + + +E +   G  +  +      
Sbjct: 259 EEEKEKLSSILANMNDGVIATDDSGRVIVMNRRAKQILQVKEEQW-FGKPLSRLLGISQE 317

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              E    +    +    D++ K             +  +  P+      +T        
Sbjct: 318 IVTEYSQHENTTLLELKLDEDEKI-----------WVRVTFTPIHRRGEGITGSIAVLQD 366

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E+          K +  +  FV +VS+ELR+PLT I  + + L    +      +  +
Sbjct: 367 VTEQE---------KLERSRKEFVANVSHELRTPLTTIKSYLEALGDGAIEDPQLSER-F 416

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +      +  ++ LV D+L L+ +D+    L  +   ++D+L EV    A +  +  IRI
Sbjct: 417 LGVTRNETERMIRLVTDLLHLSRLDSNQATLVKTPTNISDMLEEVADRFAVQSRQRKIRI 476

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGS 728
            V  D ++GS   DR ++ Q+   +LSNA+ +++    V ++A R D+     SV++ G 
Sbjct: 477 DVSVDARVGSISIDRDKIDQVLDNLLSNAIKYTADEGIVRIQANRLDHDWVEISVEDTGI 536

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP+     +F RF            G GLGLSI    +  HGG + + S     T ++ 
Sbjct: 537 GIPKKDLSRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGSIQLESEYNVGTRVSF 596

Query: 787 RIP 789
            +P
Sbjct: 597 TLP 599



 Score = 40.7 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 21/163 (12%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            ++      IL N+   +   D +  +   NR   ++ ++        P         R 
Sbjct: 259 EEEKEKLSSILANMNDGVIATDDSGRVIVMNRRAKQILQVKEEQWFGKP-------LSRL 311

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
                E +   +  EN   +    +  +  W       +H         G+I + +++T 
Sbjct: 312 LGISQEIVTEYSQHENTTLLELKLDEDEKIWVRVTFTPIH--RRGEGITGSIAVLQDVTE 369

Query: 422 QVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPD 453
           Q  LE            +  T +      ++ L +G A+  P 
Sbjct: 370 QEKLERSRKEFVANVSHELRTPLTTIKSYLEALGDG-AIEDPQ 411


>gi|197103756|ref|YP_002129133.1| sensory box histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477176|gb|ACG76704.1| sensory box histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 788

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 115/650 (17%), Positives = 239/650 (36%), Gaps = 65/650 (10%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE- 239
                 + ++   +   LF+    L+        I   N ++   TE  G    + IG  
Sbjct: 2   ARKSATRAADRAEMVSWLFEHSRDLMHVVGPDRCIRLVNPAW---TELTGWREDELIGRR 58

Query: 240 SRKLFKEEIKKRMISSSALEKN----FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-D 294
           + ++F  + +  M++  A  K       E    L+ G++      R +   G   +++ D
Sbjct: 59  AIEVFHPDDRPHMLARVAQSKVGVVYESEARVLLKDGSSCWVAARRQMMPDGSHIVSMRD 118

Query: 295 VSKEITVNDQLTHTYEILHNL--TVAIAIFDQNRYLQFHNRSFVELWEIDL--AFLATNP 350
            +++    D++ +       L  +  I I+        +  +   +W  D   A +  +P
Sbjct: 119 ATEQRAHRDEIDNARRTRKALGASAGIGIW-------TYEPALGRIWWSDEIVAMVGFDP 171

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTL--HVIVTSN 407
             ++  E  R+   +    +     +      ++ E   ++      G+ +   V VT+ 
Sbjct: 172 RENDTPEAFRA---MMHPRDRARTMQAFARAVENGEPLQREHRVWARGRWMVVRVTVTTE 228

Query: 408 PRGGTIWMF----ENLTVQ--------------VDLETKYNTLVKVQGETIDHLSEGVAV 449
           PR G ++      E++T                     +     +     ++    GV  
Sbjct: 229 PRPGGVFALKGISEDITELAAARDAARHGEQQARKARREAQVNARRLKMALEAAEAGVYE 288

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
                R   ++P F  +          G+            ++  D   + A+       
Sbjct: 289 IDHVARTFWASPEFERITG------RRGSSYEEAVHLSYPGFHPEDLPHVRASFRALHRG 342

Query: 510 ERKS---LQGTLELLSDSVLEYSIIPLPNAQTMLTF-------VNVTDSVRAERALTEKN 559
           ++KS    +  +     +     +           +        +     R E AL E  
Sbjct: 343 DKKSGESFEARIVRPDGAERWVRVYHHLKVGRNGRWLKAVGLVQDCDAHKRQELALKEAQ 402

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            A   A E K +F+ ++S+E+R+PL  ++G   +LK+ +   L  +    ++   +   +
Sbjct: 403 RAAEAAGEAKGAFLANMSHEIRTPLNGVMGVLHILKSEQ---LTDEGRSLLDEALSCGQM 459

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ND++D + ++AG ++L    +    L+  V + +  +     +++ V +D ++G 
Sbjct: 460 LAELLNDVIDFSKIEAGRLELACEPVDPKALVEGVARLLKPQAQAKGLQLIVDADARMGW 519

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             +D  RL Q    ++ NA+ F+ KG  VI     D G   F V++ G  IPE     +F
Sbjct: 520 VRSDPVRLRQALFNLVGNAVKFTEKGHVVIRCRLADAGVLRFEVEDTGVGIPEAAQARLF 579

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            RF        R   G GLGL+I +    +  G V  +S++   +T    
Sbjct: 580 QRFNQADASTTRKFGGSGLGLAITKRLAEMMNGQVGFTSAEGRGSTFWLE 629



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 73/254 (28%), Gaps = 31/254 (12%)

Query: 53  KKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI-----PQ 107
           +   E  +   EI D   +    L  +  + I W  +     I       I       P+
Sbjct: 117 RDATEQRAHRDEI-DNARRTRKALGASAGIGI-WTYEPALGRIW--WSDEIVAMVGFDPR 172

Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF----DLVAETQN---DCAIKIEGRVS 160
            +    +F   +      +  +A  +  + G+       + A  +       +  E R  
Sbjct: 173 ENDTPEAFRAMMHPRDRARTMQAFARAVENGEPLQREHRVWARGRWMVVRVTVTTEPRPG 232

Query: 161 GSCAFL----RILSLDGIYSELAETTLKCKKLSNHISV----FKVLFDSLDFLVWHRDQA 212
           G  A       I  L            + +K      V     K+  ++ +  V+  D  
Sbjct: 233 GVFALKGISEDITELAAARDAARHGEQQARKARREAQVNARRLKMALEAAEAGVYEIDHV 292

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI-------KKRMISSSALEKNFCET 265
               WA+  +++ T   G  +++A+  S   F  E         + +           E 
Sbjct: 293 ARTFWASPEFERITGRRGSSYEEAVHLSYPGFHPEDLPHVRASFRALHRGDKKSGESFEA 352

Query: 266 VSTLEHGNNKSYKI 279
                 G  +  ++
Sbjct: 353 RIVRPDGAERWVRV 366


>gi|120601171|ref|YP_965571.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561400|gb|ABM27144.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 839

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 115/643 (17%), Positives = 228/643 (35%), Gaps = 45/643 (6%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN---TETEGIVFQ 234
           +A    +     +   + K +  +    +  +D  G  L  N +++      E + +   
Sbjct: 38  IARLRRQVGAARHENDLLKAMRIASPVPLCVKDVHGRYLGCNHAFELLFGVREADILGGT 97

Query: 235 KAIGESRKLFK-EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFG 287
            A+   + L   E   +  ++     +    +      G     ++             G
Sbjct: 98  AAVELPQPLAAGESAAEENMARFGTSRQTFMSAYESPGGPALVLQVDCATWRDASGVHKG 157

Query: 288 EAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW---E 340
           +     D++     E  +++       ++    ++I  FD   ++ F N+  + ++    
Sbjct: 158 QVNAYADITPLKRAEAALHESEARNRMLVEEAPISIMSFDAAGHITFVNKWHLRVFCRHR 217

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQT 399
           +D  F       D L    R+             +  I  VY    T   D W    G  
Sbjct: 218 VDAGFFIGR-RLDALPGLARAGLCERVARVLHGEELAIREVYFPEFTGGHDGWASIRGVP 276

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           +H         G I + E++T +  +E        +    + +L         +GR+ + 
Sbjct: 277 IHRDGQ---IVGGILIREDITERKRMEEVLRQREALVSSMLRNLPIDFWAADGEGRMLM- 332

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                      +  +    H+ +     +    +    D F   + + +   + +   L 
Sbjct: 333 ---------QSDESVRVWGHLPSGVEPLTGSPLQWRNSDRFEPRVFAGETVEREIDVALP 383

Query: 520 LLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                       P+         +   ++VT+  R    L    +A   A++ K+ F+ H
Sbjct: 384 SGQMRTFNVIAAPVRLQGGITAMLRVNLDVTERKRVLAELRTARDAAEAANKAKSEFLAH 443

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+PL  ++G   LL          +   +++    SS  LL +++DILDL+ ++A
Sbjct: 444 MSHELRTPLNGVMGMLQLLDEHVAA---PQGRAWLDVALESSRALLRILSDILDLSRIEA 500

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKI 694
           G + L         +L  V  S+   +    +RI    D  +    V D  R+ Q+   +
Sbjct: 501 GRLDLMQEPFTPESVLAPVLVSLHRTVEGRAVRIVNEMDDSMPPVLVGDPGRIRQVLLNL 560

Query: 695 LSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRG 749
           L NA  ++ +G   V ++  R NG        V + G  I ++  +     F       G
Sbjct: 561 LGNAAKYTERGEVRVGMRVLRRNGKALRVHLHVTDTGVGIADEQLQRALEPFGRLRQGSG 620

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             RGVGLGL IV   + L GG + I+S     T ++  +P  E
Sbjct: 621 LPRGVGLGLPIVVRLVRLMGGTLCIASEQGVGTEVHVTLPLLE 663



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 76/281 (27%), Gaps = 32/281 (11%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
           +    +       + + +  ++   L+ E     + +D        + + H R+      
Sbjct: 160 NAYADITPLKRAEAALHESEARNRMLVEEAPISIMSFDAAGHI-TFVNKWHLRVFCRHRV 218

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE---------------TQNDCAIK 154
                    L     +  +   E++ +     +L                  +     I 
Sbjct: 219 DAGFFIGRRLDALPGLARAGLCERVARVLHGEELAIREVYFPEFTGGHDGWASIRGVPIH 278

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            +G++ G               ++ E     + L    ++   +  +L    W  D  G 
Sbjct: 279 RDGQIVGGILI---------REDITERKRMEEVLRQREALVSSMLRNLPIDFWAADGEGR 329

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           +L  +    +         +   G   +    +  +      A E    E    L  G  
Sbjct: 330 MLMQSDESVRVWGHLPSGVEPLTGSPLQWRNSDRFE--PRVFAGETVEREIDVALPSGQM 387

Query: 275 KSYKIVRVLNSFGEAGIA-----IDVSKEITVNDQLTHTYE 310
           +++ ++           A     +DV++   V  +L    +
Sbjct: 388 RTFNVIAAPVRLQGGITAMLRVNLDVTERKRVLAELRTARD 428


>gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
 gi|45047732|emb|CAF30859.1| Sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
          Length = 639

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 123/242 (50%), Gaps = 4/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L      L++ D++K+  +  VS+ELR+PLT+I G+ +L+    +G++N  Q + 
Sbjct: 394 KHAEELKISYNELKELDKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKC 453

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++    +   L  L+  +LDL+ ++ G +++    + L  ++ +V + +     E NI++
Sbjct: 454 LQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKL 513

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +    +  AD+ R+ Q+ + ++ NA+ FS    ++++    ++      V + G+ 
Sbjct: 514 NKEVED--IAIEADKDRITQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTDRGAG 571

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP+   + +FNRF       +R   G GLGL++ +S +  H G + + S     +T +  
Sbjct: 572 IPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHII 631

Query: 788 IP 789
           +P
Sbjct: 632 LP 633


>gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118]
 gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118]
          Length = 1364

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 99/614 (16%), Positives = 218/614 (35%), Gaps = 65/614 (10%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y+  T       +  +     ++          ++    +  ++   L  G         
Sbjct: 269 YRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAGFVASLNQSSPWLIGG--LVMAAAV 326

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +  +      +  + +E  +  Q+     ++ + + AI     +  +   N +   ++  
Sbjct: 327 LFAALLVLYFSNGLRREEVLRKQME-LAALVSHSSEAIVAETPDGRITHWNPAAEAMFGY 385

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                    + DE ++   +    P+            ++  ++   +   H  +G  +H
Sbjct: 386 ---------TADEAIDQDLTMLLSPQPYAMPEVDHADAALAGNASAAQTMRHR-DGHQVH 435

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVK------------------VQ 436
           V+ +  P         G    F +++ +V    +   L                    +Q
Sbjct: 436 VLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEHQVAERTSELVKFSVLQ 495

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT---------EENRLSPGTHIRNIAATC 487
              + H    +      G + L NPA   L            + ++      ++  A   
Sbjct: 496 RAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHML 555

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQ-----TML 540
           +          L A    +      + + T        L    ++  L +        + 
Sbjct: 556 AEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLG 615

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+  
Sbjct: 616 VAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE-- 673

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L       V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + +
Sbjct: 674 -LPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRS 732

Query: 661 KMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
            +    + + V          + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 733 SLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    + L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852

Query: 773 SISSSDEGVTTINC 786
            + S     +    
Sbjct: 853 EVESVPGRGSEFYF 866


>gi|294494881|ref|YP_003541374.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
 gi|292665880|gb|ADE35729.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
          Length = 621

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 3/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A +A              K  F+  +S+ELR+PL  IIGF+ LL +++ G++N K+ +Y
Sbjct: 372 KANKAFLRAKSLEEDVKTTKTEFIATMSHELRTPLNAIIGFSQLLSSNRYGNMNEKELKY 431

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I      LLNL+NDILD + + +  M+LN  TI L ++ +E+K  I     +  I +
Sbjct: 432 SFSILKGGKHLLNLINDILDFSKIHSNKMELNIETINLKEICDEIKTFITPLATKKGITV 491

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +  +   +     D+ + +QI S +LSNA+ F+     V +           SV ++G  
Sbjct: 492 EYNNKFDID-INLDKLKFIQIMSNLLSNAVKFTPDKGKVSVDIDFVAEYVQVSVTDSGIG 550

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE     +F+ F+        +  G GLGL++V+ ++ +HGG + + S     +T    
Sbjct: 551 IPEHKLNMIFDPFIQADSSNTRKYGGTGLGLALVKEYVEMHGGTIWVESELGKGSTFTFT 610

Query: 788 IP 789
           IP
Sbjct: 611 IP 612


>gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1129

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 86/401 (21%), Positives = 161/401 (40%), Gaps = 26/401 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G   +  ++  +V    ++          +D   + +    PDG I   N     ++   
Sbjct: 301 GVSNLIRHVIERV----QWQEERTRLAAIVDSSGDAIIGKAPDGTITSWNNGAEVIYGWL 356

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E  +   T    +    +R  +E          +  F   R    GT+  ++ +V     
Sbjct: 357 EEEVIGETVSILLPPGMAREESEILEAMKTGRRLDQFQTRRMRKDGTIIDVAITVSPIRG 416

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +      +     ++T   R E  L++  +   +A   +  F+ +VS+ELR+P+  I+G 
Sbjct: 417 MDQQVVGSSSIERDITARRRREEELSKAKDEAEQATRAQGEFLANVSHELRTPMNAILGM 476

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L     L  L   +  Y++    S+  LL LVNDILD + ++AG  +L      L  +
Sbjct: 477 LELTLQENLTPL---KRDYLQTAKDSADSLLLLVNDILDFSRLEAGHFELEPVPFSLRVM 533

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++E  ++++ +  E  + +    D ++ S  + D  RL QI + +  NA+ F+ +G  V+
Sbjct: 534 IDEAVKTLSLRACEKGLELICRIDKRVPSQVLGDPVRLRQILTNLAGNAIKFTEQGEVVV 593

Query: 710 -LKAARDNGDF-------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
            +K     G+               FSV + G  I  +  K +F  F        R   G
Sbjct: 594 DVKLIEPAGEIPLPRLQPGEKALLEFSVSDTGIGIAVEDQKRIFAPFAQADASTTRHYSG 653

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRIPSKE 792
            GLGL+I    I L  G + ++S     +  +    +P  E
Sbjct: 654 TGLGLAICHELIGLMDGEMYLTSEPGEGSCFSFQVILPVAE 694


>gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1333

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 83/508 (16%), Positives = 190/508 (37%), Gaps = 42/508 (8%)

Query: 306  THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 +L ++ + I +   +  ++    +   ++ +             + +  R  + +
Sbjct: 685  NDLQNLLSSINIPILMLGGDMRIRRFTPTAGRIFNL------------IVTDIGRPLSDI 732

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLT 420
              +L     +  I  V  +           +G    + +       +   G + +  ++ 
Sbjct: 733  NHKLTIPDLEAQILEVVGTLNLKTQEVQDNDGHWYDLRIRPYRTIDHKIDGAVVVLVDID 792

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                   +           +  + E + +   D ++  +N  F   ++            
Sbjct: 793  ALKRSTEELRASKDYAEAIVATIRESLVILDIDLQVITANQFFYEKFQVTPEETEHHL-- 850

Query: 481  RNIAATCSRYYNESDGWDLFAAII---TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              I       +N      L   ++   T F +    ++   E +   ++  +   +    
Sbjct: 851  --IYEIGDGQWNIPQLRSLLEDVLPQQTQFQNL--EVEHNFERIGQKIMRLNARKMTLLD 906

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADE-----------IKNSFVQHVSYELRSPLTN 586
                 + V + +  ++ L  +   L   ++            K+ F+  +S+ELR+PL +
Sbjct: 907  NRRMILLVIEDITQQKQLEAERTHLLAQEQSARNAAEAANHAKDEFLSILSHELRNPLNS 966

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            ++G+ +LL+T +L  +   Q   +E I  S+    +L++D+LD++ + +G ++++   + 
Sbjct: 967  MLGWANLLRTHQLEEVTVNQG--LEAIERSAQAQNHLISDLLDVSRISSGRLRMDAQEVE 1024

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            L  ++      +       NI+I+   D      + D  RL Q+   +LSNA+ F+    
Sbjct: 1025 LIPVIEAAIAVVRLAAEAKNIQIETKLDPTHTPMLGDPIRLQQVIWNLLSNAIKFTPTKG 1084

Query: 707  TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
             + +            VK+ G+ I  D    VF RF        R  +G+GLGLSIV   
Sbjct: 1085 RIDVTLEYTYFQAQIQVKDTGAGIKADFLPYVFERFRQADGTRTRSNQGLGLGLSIVRHL 1144

Query: 765  INLHGGHVSISSS-DEGVTTINCRIPSK 791
            + LHGG V + S  +   +T   ++P +
Sbjct: 1145 VELHGGTVEVESQGEGQGSTFTIKLPVQ 1172



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 99/300 (33%), Gaps = 42/300 (14%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            L+ I  EL    ++  ++SN     + L  S++  +        I       ++ T T 
Sbjct: 665 ELNTINEELQRRNVESNQVSND---LQNLLSSINIPILMLGGDMRI-------RRFTPTA 714

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALE-----KNFCETVSTLEHGNNKSYKIVRVLN 284
           G +F   + +  +   +   K  I     +              ++  +   Y +     
Sbjct: 715 GRIFNLIVTDIGRPLSDINHKLTIPDLEAQILEVVGTLNLKTQEVQDNDGHWYDLRIRPY 774

Query: 285 S------FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRS 334
                   G   + +D+       ++L  + +    I+  +  ++ I D +  +   N+ 
Sbjct: 775 RTIDHKIDGAVVVLVDIDALKRSTEELRASKDYAEAIVATIRESLVILDIDLQVITANQF 834

Query: 335 FVELWEIDLAFLATNPSNDELLE------FLRS--ANKLPEQLNWKTWKENIFSVYKSSE 386
           F E +++       +    E+ +       LRS   + LP+Q  ++        V  + E
Sbjct: 835 FYEKFQVTPEETE-HHLIYEIGDGQWNIPQLRSLLEDVLPQQTQFQN-----LEVEHNFE 888

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                    N + + ++         + + E++T Q  LE +   L+  +    +     
Sbjct: 889 RIGQKIMRLNARKMTLLDNRRM---ILLVIEDITQQKQLEAERTHLLAQEQSARNAAEAA 945


>gi|304393603|ref|ZP_07375531.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
           R2A130]
 gi|303294610|gb|EFL88982.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
           R2A130]
          Length = 814

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 109/506 (21%), Positives = 215/506 (42%), Gaps = 62/506 (12%)

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKL----------PEQLNWKTWKENIFSVYKSSETH 388
           W++    +  +PS  ++L     +  +          P+  N        F        H
Sbjct: 289 WDLSRGSIVWSPSMHQMLGRAGRSRAMGYGELAELLHPDDRNLLQIANETFQESSRQIDH 348

Query: 389 KDTWHLPNGQTLHVIVTS---NPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +      +G  + + + +   + RG     I +  +++ Q  L+ +         E ID+
Sbjct: 349 RFRILHASGGWVSMRLRAELVHYRGAVPHLIGIAVDVSEQEALKRQSRDADIRLREAIDN 408

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +SE   ++    R+ L N  ++ L+    + +  G   +++AA        S        
Sbjct: 409 ISEAFVLWDAKERMVLCNGKYQQLFNLPSSAIRHGVTKQDVAAIRKAPVMRSQ------- 461

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE----- 557
           + T  + +  S     +L      + S  P  +   +    ++T   R +  L +     
Sbjct: 462 VNTDRNQKHHSNTFEAQLDDGRWFQISERPTLDGGAVSVGTDITQIKRNQSKLEDSEREH 521

Query: 558 ------------------------------KNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                                         + +   +A++ K+ F+ ++S+ELR+PL  I
Sbjct: 522 LATIVELRKMQQNLVAFANEADDQRLLADEQRKQADEANKSKSQFLANMSHELRTPLNAI 581

Query: 588 IGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IGF+D+++    G L N K ++Y   I +S   LL ++ND+LD++ ++AG M++    + 
Sbjct: 582 IGFSDIMREGMFGPLGNEKYTEYANDIRSSGGFLLGVINDVLDMSKIEAGRMQIYPEELA 641

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++DLL E  + IA +  +  +++    +  L   +ADR+ + Q+   +LSNA+ F+ KG 
Sbjct: 642 VSDLLQETLRIIAAQADDGELQVTTEIETGLD-IIADRRAVKQVLINLLSNAVKFTPKGG 700

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
           ++ + A R + +    + ++G  I +D  + +   F   A        G GLGL+I +S 
Sbjct: 701 SIQVSARRLDDNVEMEILDSGIGISQDALERIGLPFEQAASELTRDHVGSGLGLAIAKSL 760

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
             LHGG V ISS +   TT+  R+P 
Sbjct: 761 AELHGGSVDISSIEGIGTTVLVRLPL 786



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 95/277 (34%), Gaps = 25/277 (9%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAI 237
           A T           + F          +W  D   G I+W+  S  +     G       
Sbjct: 259 ARTRETESLYFETNARFDTALARGRCGLWDWDLSRGSIVWS-PSMHQMLGRAGRSRAMGY 317

Query: 238 GESRKLFKEEIKK------RMISSSALEKNFCETVSTLEHG---NNKSYKIVRVLNSF-G 287
           GE  +L   + +            S+ + +    +     G        ++V    +   
Sbjct: 318 GELAELLHPDDRNLLQIANETFQESSRQIDHRFRILHASGGWVSMRLRAELVHYRGAVPH 377

Query: 288 EAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             GIA+DVS++  +  Q         E + N++ A  ++D    +   N  + +L+ +  
Sbjct: 378 LIGIAVDVSEQEALKRQSRDADIRLREAIDNISEAFVLWDAKERMVLCNGKYQQLFNLPS 437

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           + +    +  ++   +R A  +  Q+N    +++  + +++         L +G+   + 
Sbjct: 438 SAIRHGVTKQDVAA-IRKAPVMRSQVNTDRNQKHHSNTFEA--------QLDDGRWFQIS 488

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
                 GG + +  ++T     ++K     +    TI
Sbjct: 489 ERPTLDGGAVSVGTDITQIKRNQSKLEDSEREHLATI 525


>gi|299538376|ref|ZP_07051659.1| sensor protein [Lysinibacillus fusiformis ZC1]
 gi|298725963|gb|EFI66555.1| sensor protein [Lysinibacillus fusiformis ZC1]
          Length = 591

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 166/417 (39%), Gaps = 30/417 (7%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKV 435
            I S  +            N +       ++  G     F  +  Q+    +  N   + 
Sbjct: 199 RITSPLRKMRELAFEIAKGNFEAKMPTTQNDEIGQLAVAFNQMGRQLKHNLEVINQENEQ 258

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++ V  F  D  I LSNP    L +            ++        Y+  D
Sbjct: 259 LSNILTSMTDAVITFNRDRTILLSNPPAERLMQKWFVNKGS----QSAKPIPPELYHMLD 314

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              +F             L+  +E +  S   ++I PL +           + +R   A+
Sbjct: 315 HVLMFED----------KLEEEIE-MDGSYYTFTISPLYSG----------EMIRGAVAV 353

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                   + +++++ F+ +VS+ELR+P+  + G+++ L          ++++  + I  
Sbjct: 354 IRDMTEQHRLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDQEERNEITKIIYD 413

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
            S  +  LV D+LDLA +++G M L    + +N     + Q  +    E ++R+   S+ 
Sbjct: 414 ESKRMGRLVTDLLDLARMESGHMALYKDELPINSTFERITQKFSQVAKEKHVRLLFESEF 473

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   D  R+ Q+ + ++ NA+  + +GS V +K  ++      SV++ G  IP++ 
Sbjct: 474 NDEAMINIDEDRIEQVLTNLVDNALRHTDEGS-VSVKVEQEPTFAKISVQDTGHGIPQED 532

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF RF          + G GLGL+I  + +  H G++ + S  +  TT    +P
Sbjct: 533 LPYVFERFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 589



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 85/277 (30%), Gaps = 36/277 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEIDLAFLATNPSNDEL 355
             +N +      IL ++T A+  F+++R +   N     L   W ++    +  P   EL
Sbjct: 250 EVINQENEQLSNILTSMTDAVITFNRDRTILLSNPPAERLMQKWFVNKGSQSAKPIPPEL 309

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              L       ++L  +   +  +  +  S  +       +G+ +          G + +
Sbjct: 310 YHMLDHVLMFEDKLEEEIEMDGSYYTFTISPLY-------SGEMIR---------GAVAV 353

Query: 416 FENLTVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             ++T Q  LE   +         ++     +   SE +     D  I+           
Sbjct: 354 IRDMTEQHRLEKLRSDFIANVSHELRTPIAMLQGYSEALM---DDDFIQDQEERNEITKI 410

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             +     G  + ++             +     I ++F+          +  S    E 
Sbjct: 411 IYDESKRMGRLVTDLLDLARMESGHMALYKDELPINSTFE-------RITQKFSQVAKEK 463

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            +  L  ++     +   D  R E+ LT   +   + 
Sbjct: 464 HVRLLFESEFNDEAMINIDEDRIEQVLTNLVDNALRH 500


>gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
 gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
          Length = 1043

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 131/672 (19%), Positives = 235/672 (34%), Gaps = 78/672 (11%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-GIVFQ 234
            S++       K  S     ++ L  +   +V   D AG + + + + ++  E E   +  
Sbjct: 366  SDVTRRKDAEKAKSQIERRYRALLQNSSDMVAVIDAAGHLQYISPAVERLLEFEVQELVG 425

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCET---VSTLEHGNNKSYKIVR--VLNSFGEA 289
            + I +       E  +    S AL   +            G   + +IV   +L      
Sbjct: 426  REIFDIIHPADVETARTSFYSIALTPGYSAPQELRLRRADGEYLTTEIVANNLLTDEVLH 485

Query: 290  GI---AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL-----QFHNR---SFVEL 338
            GI   A D+++      QL     +   L  A  +   ++ +        N       E 
Sbjct: 486  GIVLNARDITERSRARAQLEVQNAVARVLAEAENL---DQSIPEILQALCNNLDWELSEF 542

Query: 339  WEIDL---------AFLATNPSNDELLEFLRSANK-LPEQLNWKTW-------------- 374
            W +D          A+        E L+  +       E L  + W              
Sbjct: 543  WGVDPEQDSMTFNFAWSLPGIDLSEFLDISQHTRIQRGEGLAGRVWEKATAIQVPDITQE 602

Query: 375  ----KENIFSVYKSSETHKDTWHLPNGQ----TLHVIVTSNPRGGTIWMFENLTVQV--- 423
                ++                    G     TL  +   +     + M   +  Q+   
Sbjct: 603  ENFVRKIEVEALSLKTAVGFPIRSREGVIGVFTLFSMRHRHVDNHLLSMLNTVGAQIGQF 662

Query: 424  ----DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
                  E +            ++ ++ +  FG DG I   N  + S        L     
Sbjct: 663  IARKRAEQEITQNEDRYHYLFENSADLILTFGTDGTILHPNSTWMSTLGYSREELLKKPL 722

Query: 480  IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
               I               +   I+ S   ++  L    +     V+E +I        +
Sbjct: 723  FDLIGPEDRERC-----KAIIGMIVRSGSTDKVELTFRSQDGRKIVVEGTISCRYGITGV 777

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                 +   V   R            D +KN F+  VS+ELR+PLT+I G   LL    L
Sbjct: 778  EYCSAIFQDVTKRRE----------VDRMKNEFISVVSHELRTPLTSIRGSLGLLAGGAL 827

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 K  + ++    ++  L+ L+NDILD+  +++G + LN   +   DL+++   ++ 
Sbjct: 828  RKDPEKADRMLDIALKNTERLVRLINDILDIEKIESGNIALNVQPLDAADLISQASATMH 887

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 N +R++  S    G   ADR R+LQ  + +LSNA+ FS   +TV + + R  G  
Sbjct: 888  AMADANKVRLETHS--TRGILYADRDRMLQTLTNLLSNAIKFSKPDNTVTISSQRRGGGL 945

Query: 720  IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +  V++ G  IP +  +++F RF  V  +    + G GLGL+I  S +  HGG + + S 
Sbjct: 946  LIRVRDQGRGIPSNKLQTIFERFQQVDASDSRDKGGTGLGLAICRSIVQQHGGSIWVDSI 1005

Query: 778  DEGVTTINCRIP 789
            D   +     +P
Sbjct: 1006 DGKGSEFFILLP 1017



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 67/477 (14%), Positives = 159/477 (33%), Gaps = 45/477 (9%)

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD-----GIYS 176
            H   +    ++L+         AE+     +     ++G   FL+   LD      +  
Sbjct: 60  SHTQDVITNLDQLQST----LEHAESSQGRYL-----ITGDETFLKNYELDVRTTRELSR 110

Query: 177 ELAETTLKCKKLSNHISVFKVLF----DSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            L + T         +   + L     D ++  +  R   G             +     
Sbjct: 111 NLLQLTSDNATQQLRLKDLQGLIEQKIDHMNLTLVLRRNNGLTEDVQRRVATEGKRRMDE 170

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
            Q  + E   L   E +   +   A  ++  +++ ++  G   +     +  +     + 
Sbjct: 171 IQTKVSEGVAL---ETRLLSVRIEAQRRSAGKSLRSILTGGLLA----MLFLAAAGLVLQ 223

Query: 293 IDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            D+ K   V  QL  T      +L++   AI   D +  +   N +  ++     + +  
Sbjct: 224 RDIQKRFAVERQLQRTTALQRAVLNSANYAIISTDTSGTIISFNSAAEQMLGYHASEVVG 283

Query: 349 NPSNDEL-----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLH 401
             + ++L     LE            +     E++ +  +     +  W     +G    
Sbjct: 284 RLAPEKLHDPTELEQHAEQMSRFFGQSISAGFESLIAKARLGTIDESEWTYVRRDGSRFF 343

Query: 402 VIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            +++++          G +++  ++T + D E   + + +     + + S+ VAV    G
Sbjct: 344 GLLSTSAMHDENGAITGYVFIVSDVTRRKDAEKAKSQIERRYRALLQNSSDMVAVIDAAG 403

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            ++  +PA   L + E   L  G  I +I          +  + +      S   E +  
Sbjct: 404 HLQYISPAVERLLEFEVQEL-VGREIFDIIHPADVETARTSFYSIALTPGYSAPQELRLR 462

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKN 570
           +   E L+  ++  +++       ++    ++T+  RA   L  +N   R   E +N
Sbjct: 463 RADGEYLTTEIVANNLLTDEVLHGIVLNARDITERSRARAQLEVQNAVARVLAEAEN 519


>gi|298244532|ref|ZP_06968338.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297552013|gb|EFH85878.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 856

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 125/773 (16%), Positives = 262/773 (33%), Gaps = 77/773 (9%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKY--HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIP 106
           N+ ++  +     L    D ++      L+ + N   +  D   +  E+IG+        
Sbjct: 126 NAFSRNEHMYRDLLESFSDGVTILTPEGLVLDINQRPLA-DAHLQREEVIGKPFADSPAW 184

Query: 107 QTDTDLLSFENWLKFHHYIKLSKATEKL-RKEGQSFDLVAETQNDCAIKIEGRVSGSCAF 165
             D  +             +L  A  +  R E   F+     ++D ++ I          
Sbjct: 185 SHDPAVQ-----------QQLRAAIARASRGETVRFEARIHPRSDLSLDIL------MTI 227

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
                       L        +        + L D++   VW     G +++ N      
Sbjct: 228 TSHRDTSQQVEYLICAGRDITERKRIEDELRTLVDAIPHFVWIARPDGHVIYNNQRLIDY 287

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC----ETVSTLEHGNNKSYKIVR 281
                   +     +     ++ +   +  +A+++         +     G  + + +  
Sbjct: 288 LAIPREQVEGDSWIATVHPDDQQRVWDVWQTAIQRGVPYEVEHRMQDGISGAYRWFLVRG 347

Query: 282 VLNSFGE------AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFH 331
           +     E       G   D+ K+     ++  + E L  L   +         +  L + 
Sbjct: 348 MPQRNAEGTILHWIGTCTDIDKQKQAEQRIKASEENLRVLAETVPQLVWTTRPDGRLDYC 407

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK-TWKENIFSVYKSSETHKD 390
           N+ + E           + + ++L  +       PE +      + +  +  +  E    
Sbjct: 408 NQRYCEYT---------HATFEQLQGYGWRQFLHPEDVERSLALRHHTLATGEPFECEHR 458

Query: 391 TWHLPNGQTLHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHL 443
             +   G+    +  + P     G  +  F    ++  Q   E       +     ID  
Sbjct: 459 LRNGQAGEYRWFLARAMPVRDETGQIVKWFGTNTDIEEQKRTEEALRQSQERIRALIDSN 518

Query: 444 SEGVAVFGPDGR---IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
             G+     +G    +  +N AF  +       L+  T                +   LF
Sbjct: 519 IIGI--TSNEGEEEVLVDANDAFLHMTGYTREDLNSRT-------LSRMKITPPEHAPLF 569

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             ++       +      EL+     + S +P+     +   V   D  R        N 
Sbjct: 570 QRVLQEVATHGQHTPMETELVCK---DGSRLPI-----LAGAVTFQDHPRQMIGFVLDNS 621

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++ ++ K+ F+   S+ELRSPLT +   T LL+           +  +  +      +
Sbjct: 622 ARKELEQRKDDFISMASHELRSPLTALKMHTSLLRRQLAMQGFQTSAPALSSMETQINKV 681

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV ++LD++ + AG ++    T+ L+ LL E+  ++      ++I ++      L   
Sbjct: 682 TRLVEELLDVSKIQAGRLEYRQETVDLDALLREIADTMQQTHPSHSILVRGAVQANL--- 738

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           +ADR RL Q+F+ ++SNA+ +S    TV +            V+++G  IP +    +F 
Sbjct: 739 MADRDRLGQVFTNLISNAIKYSPGAETVEMDLEASPETVTIRVRDHGLGIPREQRDKIFE 798

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF       Q+   G+G+GL IV   +  HGG +++ S+    +     +P K
Sbjct: 799 RFYRVTGPKQKAIPGLGMGLYIVAEIVKRHGGTITVESAVGKGSIFTVTLPKK 851



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/378 (12%), Positives = 102/378 (26%), Gaps = 37/378 (9%)

Query: 203 DFLVWHRDQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
              ++  D    I++AN   +         V  K +             + +  +   + 
Sbjct: 26  PGALFLLDDDATIVYANAHAQAMIGATRDDVCGKPLWRGAPQLVSTSLYQAVQKAKQTRE 85

Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTV 317
             E V  +  G N          + G            S +   +       ++L + + 
Sbjct: 86  STE-VEYISPGTNSWLHAWLSPTNEGLSIFFQEYLEPRSPQNAFSRNEHMYRDLLESFSD 144

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP--------SNDELLEFLRSANKLPEQL 369
            + I      +   N+  +    +    +   P         +  + + LR+A       
Sbjct: 145 GVTILTPEGLVLDINQRPLADAHLQREEVIGKPFADSPAWSHDPAVQQQLRAA------- 197

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
             +  +              D              TS      I    ++T +  +E + 
Sbjct: 198 IARASRGETVRFEARIHPRSDLSLDILMTITSHRDTSQQVEYLICAGRDITERKRIEDEL 257

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            TL       +D +   V +  PDG +  +N            ++   + I  +     +
Sbjct: 258 RTL-------VDAIPHFVWIARPDGHVIYNNQRLIDYLAIPREQVEGDSWIATVHPDDQQ 310

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVN 544
                D W         ++ E +   G     +        +P  NA       + T  +
Sbjct: 311 RV--WDVWQTAIQRGVPYEVEHRMQDGI--SGAYRWFLVRGMPQRNAEGTILHWIGTCTD 366

Query: 545 VTDSVRAERALTEKNEAL 562
           +    +AE+ +    E L
Sbjct: 367 IDKQKQAEQRIKASEENL 384


>gi|167623448|ref|YP_001673742.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
 gi|167353470|gb|ABZ76083.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 1180

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 94/504 (18%), Positives = 189/504 (37%), Gaps = 23/504 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +         IL        + D    ++  N +   L+    + L     +  +   
Sbjct: 224 QALESANIRLNAILQTAVDGFVVVDTKGLIEEVNPAVSRLFGYKASELIGQNVSLLMPTN 283

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRGGTI 413
            R+ +    Q   ++ ++ +    +     K      +G    + ++ +          +
Sbjct: 284 ERNVHDEYIQHYLESAEDKMVGKGRELLAQK-----KDGTLFSIELSISKMCIDDEVLFL 338

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            + ++L+     +        +   T++   + +      G ++  N A   L+K    +
Sbjct: 339 GLVKDLSDVKRAQVAAQRTESILLATLEGSRDALITIDITGEVQEVNDAACLLFKYHSEQ 398

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +        + A   + +  +   +               +Q +        +E ++IP+
Sbjct: 399 MIGQRLESVLFAGEEKLHFHNILEEYRVTGKGVAIKHSTQMQASRSDGKAVAVEVTLIPV 458

Query: 534 PNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                ML    + D  R    E  L    E   +  E K+ F+  +S+E+RSPL  ++G 
Sbjct: 459 QLGSEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRSPLNAVLGS 518

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            DL+  S+   LN +Q  Y      + T LL+ +NDILD + ++AG M L  S      L
Sbjct: 519 VDLILDSR---LNKEQRIYANTAKEAGTSLLSTINDILDFSKIEAGQMVLEESAFSPAKL 575

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
             +V Q ++ K  +  I + ++ +  +    V D QRL Q+   ++ NA+ FS  G  V 
Sbjct: 576 ATQVLQVLSPKAQDKGIVLAIMVNRNVPESLVGDGQRLRQVLHNLIDNAIKFSF-GGCVA 634

Query: 710 LK---AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
           ++   A  D       + + G  I E    ++F  F    ++H     G GLGL+I    
Sbjct: 635 IEMWLADTDEARLCCKISDQGIGISEQALPTLFEEFSQVHDSHNTNYSGTGLGLAICAEL 694

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I   GG +++ S     +  +  +
Sbjct: 695 IAQMGGQIAVKSQQGKGSCFSFDL 718


>gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 774

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 164/393 (41%), Gaps = 29/393 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   +       +V  +       GVA+    G+    N +   +    E  L      +
Sbjct: 90  EAAAQKALEKSRQVFRDAFHDAPIGVALVSLVGKFLKVNKSTAQITGYSEEEL-CAVDFQ 148

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--- 538
           +I        +      L       +  E++    +  ++    +  S+  L +A     
Sbjct: 149 SITHPDDLQEDLDLVDQLMQGSRRLYQLEKRYFHKSGHIV---YVRISVSLLRDANGDPQ 205

Query: 539 --MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +V++  R   AL    +    A + K+SF+  +S+E+R+P+  ++G  +LL++
Sbjct: 206 FFVAHIEDVSEQHRVNAALKAAQQEAEVASKSKSSFLAMMSHEIRTPMNALLGMAELLES 265

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +L  +Q ++V  I +S   LL ++NDILD + V++G + L    + L + + +V  
Sbjct: 266 T---ALTVQQKEFVSIIRSSGKTLLTIINDILDFSKVESGNLVLEEGYLDLYECIEDVLI 322

Query: 657 SIATKMHENNIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
             + +  E ++ +  + +       F  D  R+ QI S ++SN++ F+ KG   + +  +
Sbjct: 323 LFSNQADEKSLMLSSLVEPATMPTVFTGDPVRMRQILSNLISNSIKFTKKGEISIHVTIS 382

Query: 714 RDNGD----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
               +            F+VK+ G  IP+     +F  F         +  G GLGLSI 
Sbjct: 383 PIEAEALSEKRSYYQLQFAVKDTGIGIPKHKLDKLFKPFSQVDSSVTRKHGGTGLGLSIC 442

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR--IPSKE 792
           +  + L GG + + S     +T +    +P+ E
Sbjct: 443 KRLVELMGGQMWVESELGCSSTFHFSIQLPAYE 475


>gi|46581671|ref|YP_012479.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46451094|gb|AAS97739.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235311|gb|ADP88165.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris
           RCH1]
          Length = 839

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 114/644 (17%), Positives = 226/644 (35%), Gaps = 47/644 (7%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIV 232
           +A    +     +   + K +  +    +  +D  G  L  N ++      +  +  G  
Sbjct: 38  IARLRRQVGAARHENDLLKAMRIASPVPLCVKDVHGRYLGCNHAFELLFGVREADILGGT 97

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSF 286
               + +     +   ++ M       + F  +      G     ++             
Sbjct: 98  AAGVLPQPLAAGESAAEENMARFGTSRQTF-MSAYESPGGPALVLQVDCATWRDASGVHK 156

Query: 287 GEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW--- 339
           G+     D++     E  +++       ++    ++I  FD   ++ F N+  + ++   
Sbjct: 157 GQVNAYADITPLKRAEAALHESEARNRMLVEEAPISIMSFDAAGHITFVNKWHLRVFCRH 216

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQ 398
            +D  F       D L    R+             +  I  VY    T   D W    G 
Sbjct: 217 RVDAGFFIGR-RLDALPGLARAGLCERVARVLHGEELAIREVYFPEFTGGHDGWASIRGV 275

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            +H         G I + E++T +  +E        +    + +L         +GR+ +
Sbjct: 276 PIHRDGQ---IVGGILIREDITERKRMEEVLRQREALVSSMLRNLPIDFWAADGEGRMLM 332

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
                       +  +    H+ +     +    +    D F   + + +   + +   L
Sbjct: 333 ----------QSDESVRVWGHLPSGVEPLTGSPLQWRNSDRFEPRVFAGETVEREIDVAL 382

Query: 519 ELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                        P+         +   ++VT+  R    L    +A   A++ K+ F+ 
Sbjct: 383 PSGQMRTFNVIAAPVRLQGGITAMLRVNLDVTERKRVLAELRTARDAAEAANKAKSEFLA 442

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           H+S+ELR+PL  ++G   LL          +   +++    SS  LL +++DILDL+ ++
Sbjct: 443 HMSHELRTPLNGVMGMLQLLDEHVAA---PQGRAWLDVALESSRALLRILSDILDLSRIE 499

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSK 693
           AG + L         +L  V  S+   +    +RI    D  +    V D  R+ Q+   
Sbjct: 500 AGRLDLMQEPFTPESVLAPVLVSLHRTVEGRAVRIVNEMDDSMPPVLVGDPGRIRQVLLN 559

Query: 694 ILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHR 748
           +L NA  ++ +G   V ++  R NG        V + G  I ++  +     F       
Sbjct: 560 LLGNAAKYTERGEVRVGMRVLRRNGKALRVHLHVTDTGVGIADEQLQRALEPFGRLRQGS 619

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G  RGVGLGL IV   + L GG + I+S     T ++  +P  E
Sbjct: 620 GLPRGVGLGLPIVVRLVRLMGGTLCIASEQGVGTEVHVTLPLLE 663



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 76/281 (27%), Gaps = 32/281 (11%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
           +    +       + + +  ++   L+ E     + +D        + + H R+      
Sbjct: 160 NAYADITPLKRAEAALHESEARNRMLVEEAPISIMSFDAAGHI-TFVNKWHLRVFCRHRV 218

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE---------------TQNDCAIK 154
                    L     +  +   E++ +     +L                  +     I 
Sbjct: 219 DAGFFIGRRLDALPGLARAGLCERVARVLHGEELAIREVYFPEFTGGHDGWASIRGVPIH 278

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            +G++ G               ++ E     + L    ++   +  +L    W  D  G 
Sbjct: 279 RDGQIVGGILI---------REDITERKRMEEVLRQREALVSSMLRNLPIDFWAADGEGR 329

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           +L  +    +         +   G   +    +  +      A E    E    L  G  
Sbjct: 330 MLMQSDESVRVWGHLPSGVEPLTGSPLQWRNSDRFE--PRVFAGETVEREIDVALPSGQM 387

Query: 275 KSYKIVRVLNSFGEAGIA-----IDVSKEITVNDQLTHTYE 310
           +++ ++           A     +DV++   V  +L    +
Sbjct: 388 RTFNVIAAPVRLQGGITAMLRVNLDVTERKRVLAELRTARD 428


>gi|126650115|ref|ZP_01722348.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126593287|gb|EAZ87249.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 591

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 167/417 (40%), Gaps = 30/417 (7%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKV 435
            I S  +            N +       ++  G     F  +  Q+    +  N   + 
Sbjct: 199 RITSPLRKMRELAFEIAKGNFEAKMPTTQNDEIGQLAVAFNQMGRQLKHNLEVINQENEQ 258

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++ V  F  D  I LSNP    L +            ++        Y+  D
Sbjct: 259 LSNILTSMTDAVITFNRDRTILLSNPPAERLMQKWFVNKGS----QSAKPIPPELYHMLD 314

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              +F             L+  +E +  +   ++I PL +           +++R   A+
Sbjct: 315 HVLMFED----------KLEEEIE-MDGNYYTFTISPLYSG----------ENIRGAVAV 353

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                   + +++++ F+ +VS+ELR+P+  + G+++ L          ++++  + I  
Sbjct: 354 IRDMTEQHRLEKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDLEERNEITKIIYD 413

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
            S  +  LV D+LDLA +++G M L    + +N     + Q  A    E +IR+   S+ 
Sbjct: 414 ESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHIRLLFDSEF 473

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   D  R+ Q+ + ++ NA+  + +GS V +K  ++      SV++ G  IP+D 
Sbjct: 474 NDDAMINIDEDRIEQVLTNLVDNALRHTEEGS-VTVKVEQEPTFAKISVQDTGHGIPQDD 532

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              VF RF          + G GLGL+I  + I  H G++ + S  +  TT    +P
Sbjct: 533 LPYVFERFYKADKARTRSKGGTGLGLAIARNIIKAHSGNIMVDSVLKEGTTFTFYLP 589



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 85/284 (29%), Gaps = 44/284 (15%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEIDLAFLATNPSNDEL 355
             +N +      IL ++T A+  F+++R +   N     L   W ++    +  P   EL
Sbjct: 250 EVINQENEQLSNILTSMTDAVITFNRDRTILLSNPPAERLMQKWFVNKGSQSAKPIPPEL 309

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----G 411
                  + L   L ++   E    +              +G      ++    G    G
Sbjct: 310 Y------HMLDHVLMFEDKLEEEIEM--------------DGNYYTFTISPLYSGENIRG 349

Query: 412 TIWMFENLTVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            + +  ++T Q  LE   +         ++     +   SE +     D  I+       
Sbjct: 350 AVAVIRDMTEQHRLEKLRSDFIANVSHELRTPIAMLQGYSEALM---DDDFIQDLEERNE 406

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
                 +     G  + ++             +     I ++F+   +      +     
Sbjct: 407 ITKIIYDESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAK----- 461

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             E  I  L +++     +   D  R E+ LT   +   +  E 
Sbjct: 462 --EKHIRLLFDSEFNDDAMINIDEDRIEQVLTNLVDNALRHTEE 503


>gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii]
 gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 949

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 146/268 (54%), Gaps = 8/268 (2%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           I L NAQ      ++   + A        L   N  L++ D +K+ F+ HVS+ELR+PLT
Sbjct: 538 IALDNAQAYREIESLNAGLEARVRERTAELEAANAQLKQMDRLKSKFLAHVSHELRTPLT 597

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I+GF D +    +GSLN KQ QY+  I A+ T L  ++ D+LDL+ V+AG + L++  +
Sbjct: 598 SIVGFADNMLEGLVGSLNMKQEQYLTRIKANGTRLARMITDLLDLSRVEAGKLVLSFEQV 657

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  L+++V + +       ++ I++ S        AD+ RL QI + +L NA+ ++  G
Sbjct: 658 CLPTLVSDVVEQLLPLAITKHLNIELQSPDPELLVWADQDRLSQILTNLLDNAIKYTPDG 717

Query: 706 STVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
             V ++ + D +      +++NG  IP D    +F+ F  V    R Q +G+GLGL+IV+
Sbjct: 718 GQVAVELSVDTHDMARIVIRDNGQGIPSDALPKLFDPFFRVQQEERSQTKGLGLGLAIVK 777

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
             ++LHGG +++ S  +  T     +P 
Sbjct: 778 DLVDLHGGSITVRSEVDQGTEFTFTLPL 805


>gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1]
          Length = 1522

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 119/655 (18%), Positives = 238/655 (36%), Gaps = 65/655 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
              +  + ++  +    ++  +    V   D   +I+W N  +++ T   G    +A G+
Sbjct: 365 RAEMLARNMTADLERLALVAKNTSNAVVITDVKRNIVWVNEGFERIT---GYSQAEAFGK 421

Query: 240 SRKLF------KEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIV------RVLNSF 286
           S             +  +M  +    + F  E V+  + G     ++             
Sbjct: 422 SPGRLLQCKNTDRGVASQMRVALDAGEPFKGEIVNCTKSGQEYWVELEIQPRYNDKNEPI 481

Query: 287 GEAGIAIDVSKEITVNDQLT-------HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           G   I  D+S+      +L             L NL    +  D++  +   N +F  + 
Sbjct: 482 GFMAIESDISERKATYQRLEVALRENDALLSTL-NLHGITSTADRDGIITDVNDAFCTIS 540

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 L            L  ++          W +    +    E         +G  
Sbjct: 541 GYSREELMGQTY------RLVDSHTHSTDFWQSMWNDIANGISWRGEICNKA---KDGSL 591

Query: 400 LHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG- 451
             V  T  P           I +  ++T   + +              D    G+  +  
Sbjct: 592 YWVDTTIAPFNNSSGQVERYISIQVDITANKNQQANLIIAKNQLVRAADVAELGIWTWNI 651

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           P+  +   +     ++   E   +    +    A      ++ D  ++ +AI  + +++ 
Sbjct: 652 PEDTLSF-DDRMNDIYGVPEELHNAPIPL----AYWYSLLHQEDVPNVKSAIKAALENKS 706

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRK 564
              Q    ++ + V                    M    ++T    AE  L    EA  K
Sbjct: 707 VYRQVFRIVVKNQVHFIQSTGTVEQDENGKALLMMGINRDITQQREAENILKTAREAAEK 766

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K++F+ ++S+ELR+P+  I+G   LL+ +    L+ KQ+ Y     A++  LL L+
Sbjct: 767 ANKAKSAFLANMSHELRTPMNAILGMLTLLRRT---GLDRKQADYAVKSEAATRTLLRLL 823

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD + +++G M+L      ++ +L ++   +++ +    + +    D  L  FV  D
Sbjct: 824 NDILDFSKIESGKMELECIPFDIHIMLRDLAVILSSYLKVKKVEVLFDIDPSLPQFVEGD 883

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVF 739
             RL QI + +  NA+ F+  G  V+ +K    +       F V++ G  I  +  +S+F
Sbjct: 884 SMRLQQILTNLGGNALKFTELGEVVLFIKVIAQDSHQVTLHFGVRDTGIGIAPENQESIF 943

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT--TINCRIPS 790
           + F        RR  G GLGL I + F+ L GG +++ S     +       +P 
Sbjct: 944 SGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTLESQLGQGSLFHFTITLPL 998


>gi|254421982|ref|ZP_05035700.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196189471|gb|EDX84435.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 901

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 188/454 (41%), Gaps = 59/454 (12%)

Query: 391 TWHLPNGQTLHVIVT--------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            +   +G  L V+++            G T+ +  ++T +   + K +    +     + 
Sbjct: 274 QFIKKDGTYLDVLLSTTAEGNEGPCSDGSTLGVLVDITERRQAQKKLHRNSALLRAINNL 333

Query: 443 LSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
              G+ V   D       N  F  +W+ E  +    +   N     +   +  D     A
Sbjct: 334 PPTGIFVLDCDTNEALFVNSEFYRIWQLEHLQPEVASGNINGEQLLTECLSSIDLGRFVA 393

Query: 502 -AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALT 556
            +    F +  K+++  + LL    L     P+         +  F ++T+  +  R L 
Sbjct: 394 DSTENDFTNGTKTIEDEVPLLDGRTLRRIYGPVQQDNATFAYLYMFEDITERKQVIRELA 453

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              +A   A++ K+ F+ ++S+ELRSPL +I+GFT +L+ S   + N +Q++ ++ I  S
Sbjct: 454 HATKAAEAANQAKSEFLANMSHELRSPLNSILGFTHILRES---NPNLEQAENLDIIYRS 510

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL L+ND+LD++ +++G ++LN +   L  LL+E++Q  ++ +    +R  +    K
Sbjct: 511 GEHLLALINDVLDISKIESGRVELNNTQFDLYCLLDELQQMFSSAIDRKGLRFLMRRSPK 570

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------------- 718
           L  + V+D  +L QI   +LSNA+ F++ G T+ L     N D                 
Sbjct: 571 LPRTVVSDHLKLRQILINLLSNALKFTAVG-TITLSVHSQNQDGQNQHSQNQYGQNQLNH 629

Query: 719 ----------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVG 755
                                   FS+ + G  I       +F  FV          G G
Sbjct: 630 ACESLEKQDNPQTTTTKPPSTLLTFSISDTGPGIAAADQAHLFEAFVQTQSGLDSPEGTG 689

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I   +I L GG++++ S      T    +P
Sbjct: 690 LGLAISHEYIQLLGGNLTVDSQLGEGATFAFSVP 723



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/389 (14%), Positives = 134/389 (34%), Gaps = 52/389 (13%)

Query: 131 TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190
            + LRK GQSF           +  +G+ +              + +++      K L  
Sbjct: 147 LQGLRKNGQSFWSEVTFS--PILDTQGKPT---------HYVSTHIDISHHLDTFKALQA 195

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVFQKAIGESRKLFKEEI 248
             + ++ L+     ++   D  G I+  +  + +    + E ++ Q  I      +K E+
Sbjct: 196 SEARYRYLYKQTPAMLHSIDAGGLIVGTSNYWLEKLGYQREEVIGQPLIDFVADSYKHEV 255

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG---------EAGIAIDVSKEI 299
            + + S+   + +  +        +     ++    + G           G+ +D+++  
Sbjct: 256 SEGL-STLMKDMSERDRFCQFIKKDGTYLDVLLSTTAEGNEGPCSDGSTLGVLVDITERR 314

Query: 300 TVNDQLTHTYEILHNL----TVAIAIFDQNRYLQ-FHNRSFVELWEID---LAFLATNPS 351
               +L     +L  +       I + D +     F N  F  +W+++       + N +
Sbjct: 315 QAQKKLHRNSALLRAINNLPPTGIFVLDCDTNEALFVNSEFYRIWQLEHLQPEVASGNIN 374

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----N 407
            ++LL    S+  L                   ++T +D   L +G+TL  I       N
Sbjct: 375 GEQLLTECLSSIDLG----RFVADSTENDFTNGTKTIEDEVPLLDGRTLRRIYGPVQQDN 430

Query: 408 PRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV-----AVFGPDGR 455
                ++MFE++T +  +  +            + + E + ++S  +     ++ G    
Sbjct: 431 ATFAYLYMFEDITERKQVIRELAHATKAAEAANQAKSEFLANMSHELRSPLNSILGFTHI 490

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           ++ SNP         +     G H+  + 
Sbjct: 491 LRESNPNLEQAENL-DIIYRSGEHLLALI 518


>gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 558

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 164/379 (43%), Gaps = 22/379 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +L+ + + L +     +D +S+ + +      RI   N A   L    +      +    
Sbjct: 31  ELQRRLSDLER-FRVLLDAVSDAILLVDIASNRIIDLNKAACRLIGRCKPEAVRISLRDA 89

Query: 483 IAATCSRYYNESDGWDLFAAIIT--SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-M 539
           +    +  + E       A + T   F    ++  G +  L    +  S+    + +  +
Sbjct: 90  LPGETADAWGEHLSAGGEAGLPTEERFQMSMRASDGHIVPLE---INLSLHYFESKRYAV 146

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++TD  +AE  L +  EA   A   K+ F+ ++S+E+R+P+  IIG  +L     L
Sbjct: 147 AVVRDITDRKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVELAL---L 203

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            + + +  +Y+ +I  S   LLN++NDILD + ++AG ++L+        ++    + ++
Sbjct: 204 TASDVQTREYLGFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLS 263

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG- 717
               E ++ ++   D  +      D+ R+ Q+ + ++ NA+ F+ +GS V+     +   
Sbjct: 264 YMAKEKDLPLRWSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTERGSVVVRVDRTEPEG 323

Query: 718 -------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLH 768
                    +FSV++ G  IP D  + +F  F         +  G GLGLSI    + + 
Sbjct: 324 LAGGESVQLLFSVRDTGIGIPADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMM 383

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG + + S     +T +  
Sbjct: 384 GGRIWVESDPGKGSTFHFT 402


>gi|328952020|ref|YP_004369354.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
 gi|328452344|gb|AEB08173.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
          Length = 1352

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 12/248 (4%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L E N AL++ D +K  F+ +VS+ELR+PL +I+G+T LL     G++N  Q + +  +
Sbjct: 842  ELGEANRALKELDRLKTEFLANVSHELRTPLNSILGYTQLLLDGVDGAINEDQQKSLLRV 901

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +S  LL L+ND+LDL+ + AG ++LN     L+++L+E  Q +        I +KV  
Sbjct: 902  EKASNRLLQLINDVLDLSKLRAGRLELNAQKEDLHEILSEALQVVEPLARAKEISLKVE- 960

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------NGDFIFSVK 724
            + ++   + DR +++Q+   +LSNA+ F+     + +                     + 
Sbjct: 961  ESEVPPVIVDRDKIIQVLLNLLSNAVKFTDSHGLITINLNTVSLPESHGLIKDYAAVRIS 1020

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I ED  +++F  FV       RR  G GLGL I    + +HGG + + S     +
Sbjct: 1021 DTGIGIKEDDLQNIFQEFVQIDSSATRRHGGTGLGLPISRHLVEMHGGRIWVESEYGKGS 1080

Query: 783  TINCRIPS 790
            T    +P 
Sbjct: 1081 TFTFILPL 1088


>gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 883

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 33/382 (8%)

Query: 416 FENLTVQVD----LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           +  ++ Q      +  +           +  + +GV V   +G I++ NPA  ++     
Sbjct: 525 YRYISEQSHHLGIVARQREEEASTLLAMLRSIGDGVVVSDRNGTIQIINPAAEAILGITA 584

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                G  I  +    ++                S  D    LQ            Y+ +
Sbjct: 585 EAFR-GRPISELPGVPAQL---------------SAADAESRLQKFAVAERTVRSHYADV 628

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              N + +   V   D  R E A           D +K   +   S+ELR+P+T+I GF 
Sbjct: 629 IASNGEILGGVVVYHDMTREEIA-----------DRLKTELMATASHELRTPMTSIRGFV 677

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           D+L     G +++ Q + +  I  +   L+ L++++LD++ V+AG  +L    + L ++L
Sbjct: 678 DMLMLGTFGEVSATQREPLRVIKNNVVRLVVLIDELLDMSRVEAGEARLRREELDLAEVL 737

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V   + ++  E  I + V     L   VADRQR+ QI   ++ NA  ++ +G TV + 
Sbjct: 738 RDVIAVLTSQFREREIELHVDFQEGLPHVVADRQRIEQIAVNLIGNACKYTPRGGTVWIG 797

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
               NG+    V++ G  I E+    +F  F    +  R +  G GLGLSI +  + LHG
Sbjct: 798 MHNGNGELRVDVRDTGVGISEEAKSHIFTPFYRADNPLRDEVGGTGLGLSITQRLVELHG 857

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +   S     +T +  +P K
Sbjct: 858 GRIWFESEVNAGSTFSFVLPIK 879


>gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 704

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 166/386 (43%), Gaps = 27/386 (6%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +++V+ +LE + N L       I  + + +   G DGR                 +L  
Sbjct: 187 HHISVEQELEQERNKL----DSLIQAVPDLLFEVGLDGRYYACYARHSEQLAAPAEQLVG 242

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSII---- 531
               R +         E     L  A  T     R+     L L S  +  E S+     
Sbjct: 243 ----RTVREMLPPRAAEVCLEALQEAEATGHSHGRQFF---LPLPSGEIWFELSVARKTG 295

Query: 532 PLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           P+ +  + ++   +++D  + E+ L E   A   A   K+ F+ ++S+E+R+P+  +IG 
Sbjct: 296 PVEDQPRFVVLSRDISDRKQHEKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVIGM 355

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL T++   L+ +Q QY+E I  S+  L+ L+ DILDL+ ++AG M L      L   
Sbjct: 356 AHLLGTTE---LSPEQEQYLENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRC 412

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + E+  S   ++++  I I       +   +  D+ R  QI   +L NA+ F+  G   I
Sbjct: 413 IQELLGSQQFQINQKKISIHTEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGGVTI 472

Query: 710 ----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
               + +  +      +V + G  +P D+ + +F  F    +   RR  G GLGL+I   
Sbjct: 473 TAQLVTSEENRVLIHLAVSDTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRR 532

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              L GG +   S  EG +T +  +P
Sbjct: 533 LAELMGGRIWAESGAEGGSTFHVELP 558


>gi|220924442|ref|YP_002499744.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949049|gb|ACL59441.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 900

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 84/397 (21%), Positives = 152/397 (38%), Gaps = 26/397 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T       +      +   T+D + +G+ +    G + ++N  F  +   +   L+    
Sbjct: 358 TRVAARTRELAEKEALLTMTLDAMDQGLVMVDARGVVAVTNRRFAEILDLDPAFLASRPT 417

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              ++         +       A + + D      +      +  VLE +     +   +
Sbjct: 418 DEAMSRALDEAGAFASAGPAVRAGLQADDLAPPDARCERVRPNGQVLEVTSTATADGGIL 477

Query: 540 LTFVNVTDSVRAERAL-------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             + +VT   +AE AL                    K+ F+  +S+E+R+PLT ++G+ D
Sbjct: 478 RIYTDVTARRKAEAALAEAHRIAQVARREAEAGSAAKSEFLATMSHEIRTPLTGVLGYAD 537

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +    L  +  + V  I ++   LL +V+D+LD + ++AG + L+        L++
Sbjct: 538 LL--TAQSDLAPEHRRLVGRIRSAGEALLTIVDDVLDFSKIEAGEITLDPKPFSPAQLVD 595

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVIL 710
           E    +        + +    D  +    V D  RL Q+   +L+NA+ F+  GS TV +
Sbjct: 596 EALALVRAAADRKQLALSARIDPAIPERLVGDVGRLRQVLLNLLNNAVKFTRAGSVTVTV 655

Query: 711 KAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
                  D         V + G  IPE+    +F RF       QR   G GLGL+I   
Sbjct: 656 ACEPAGPDAQDCPIRICVTDTGIGIPEEKRGRLFQRFSQVDGSIQRHYEGTGLGLAISRR 715

Query: 764 FINLHGGHVSISSSDEGVTTINCRI--------PSKE 792
            I    G + + S     +T    +        PSKE
Sbjct: 716 LIEAMNGRIDVDSRAGEGSTFWFALKLAKVPLEPSKE 752



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 70/191 (36%), Gaps = 2/191 (1%)

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
              + + +     +   E  +TL   + + ++    L +          ++   + ++  
Sbjct: 313 ADGRVIDAPVTPVREVNEIGATLAAASVRLHQQAEALQAANRELETRVAARTRELAEKEA 372

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
                L  +   + + D    +   NR F E+ ++D AFLA+ P+++ +   L  A    
Sbjct: 373 LLTMTLDAMDQGLVMVDARGVVAVTNRRFAEILDLDPAFLASRPTDEAMSRALDEAGAFA 432

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
                   +  + +   +    +     PNGQ L V  T+   GG + ++ ++T +   E
Sbjct: 433 SAG--PAVRAGLQADDLAPPDARCERVRPNGQVLEVTSTATADGGILRIYTDVTARRKAE 490

Query: 427 TKYNTLVKVQG 437
                  ++  
Sbjct: 491 AALAEAHRIAQ 501


>gi|270295813|ref|ZP_06202013.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273217|gb|EFA19079.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 978

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 176/408 (43%), Gaps = 23/408 (5%)

Query: 400 LHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETI---------DHLSEGVAV 449
              I+    +  T+ +F  ++T + D E     + K    T+           L EG+  
Sbjct: 433 YEFILCPASQKHTLDVFAVDITARKDAENTLREINKKLEMTLGIARIIPWRWDLKEGLIY 492

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
                 +   N         + + +    + R I        +      +   +    ++
Sbjct: 493 CEAQKILDHMNFTKEKNSTVQVDIIKASEYFRKIHPEDFERMHHVHENLISGKLQHIKEE 552

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-----VTDSVRAERALTEKNEALRK 564
            R   +     ++D +   ++I   +       +      +T+  R E AL    E  ++
Sbjct: 553 YRIITEVEGRKITDWMETNAVIDQRDKNGCPISLVGSLLLITERKRQEEALIRAREKAQE 612

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +D +K++F+ ++S+E+R+PL  I+GF+ LL  ++     +++ +++  I  ++ +LL LV
Sbjct: 613 SDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATEN---ETERKEFISIIETNNQLLLQLV 669

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +DILDL+ ++A  ++ NY  + LN L  +V+ ++  ++    + ++ + +  +     + 
Sbjct: 670 SDILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRLQT-GVALQFVPEVPVCYVQTEH 728

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   +L NA  F+ KG  ++        +  F VK+ G  I  +  K +F RF  
Sbjct: 729 NRLSQVLINLLVNAAKFTEKGE-IMFGYKIRGEELYFYVKDTGIGISLENQKKIFERFTK 787

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
                Q  G GLGLSI ++ +    G + + S  +   +T    IP K
Sbjct: 788 VNTFIQ--GTGLGLSICKNIVTKMKGRIGVESEGEGKGSTFWFTIPYK 833


>gi|189465363|ref|ZP_03014148.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
 gi|189437637|gb|EDV06622.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
          Length = 580

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 95/398 (23%), Positives = 184/398 (46%), Gaps = 13/398 (3%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRI 456
              VIV        ++ F +  ++   ET++   + +    +D+L     V     D R 
Sbjct: 183 IYVVIVLGTAIVLLLFYFMHKRIKKVRETEWQEHLHLLENILDNLPIAAKVKDVDNDMRY 242

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N     L++         T    +    +    E +  +L    I  F   R     
Sbjct: 243 TFINKKAEELFEYPAKEAIGRTDFDIMPEAATMIRKEDE--ELVRTGIAQFGTRRFFTNK 300

Query: 517 TLELLSDSVLEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             E  +      +I+   N +   + T  ++TD    ER L    E   +++ IK++F+ 
Sbjct: 301 NEERFTFQ--NNNIVSFSNGRKWILYTAWDITDQKILERKLRLAKEEAEESNRIKSAFLA 358

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I+GF+ +L          ++++Y+  IS ++ ILL L+NDILDL+ ++
Sbjct: 359 NMSHEIRTPLNAIVGFSSILAEDVS---EEERTEYLSIISKNNDILLQLINDILDLSKIE 415

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG ++  Y+ I +N +L+E++Q+   +    N+ I  ++  +      D++R+ Q+ +  
Sbjct: 416 AGTLEYVYANIDVNKMLSEIEQAARMRQTNANVAICAVTPLEGLLLYTDQRRVTQVLNNF 475

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           +SNAM F++ GS         +G   F V + G+ IP +    +FNRFV       ++G 
Sbjct: 476 ISNAMKFTNTGSITFGYEEPKDGYIRFFVTDTGTGIPPEKVADIFNRFVKLDSF--KQGT 533

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I ++ +    G + ++S     +T    +P ++
Sbjct: 534 GLGLAISQNIVKELKGEIGVASELGKGSTFWFTLPYEK 571



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 13/160 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVA--IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +E    + L     IL NL +A  +   D +    F N+   EL+E            D 
Sbjct: 209 RETEWQEHLHLLENILDNLPIAAKVKDVDNDMRYTFINKKAEELFEYPAKEAIGRTDFDI 268

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + E      K  E+L      +     + +++  +      N    +++  SN R   ++
Sbjct: 269 MPEAATMIRKEDEELVRTGIAQFGTRRFFTNKNEERFTFQNN----NIVSFSNGRKWILY 324

Query: 415 MFENLTVQVDLETKYN-------TLVKVQGETIDHLSEGV 447
              ++T Q  LE K            +++   + ++S  +
Sbjct: 325 TAWDITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEI 364


>gi|332701992|ref|ZP_08422080.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio africanus str. Walvis Bay]
 gi|332552141|gb|EGJ49185.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio africanus str. Walvis Bay]
          Length = 1935

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 115/678 (16%), Positives = 229/678 (33%), Gaps = 98/678 (14%)

Query: 184  KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
              K+            +   + V   D+ G +L+AN + +    +     +K  G+  + 
Sbjct: 1135 ARKQAEERAESVAKFPEQNPYPVLRFDRNGTLLYANKASRLLVGSPESPLEKTSGDLLET 1194

Query: 244  FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
             ++ ++                +     G+     I  + +        +DV+    V +
Sbjct: 1195 IRQAVR----------MGQRRDMEVFLDGSAYLLAIAPIPDQDYVNVYGMDVTALTRVQN 1244

Query: 304  QLTHTYEILHNLTVAIAI-----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             L  +   L      +A       D  R     +     L+ I      T  + +  L  
Sbjct: 1245 ALRESQADLDRAQT-VAQTGSWRLDIRRNELIWSDETYRLFGIPH---GTPLTYELFLSR 1300

Query: 359  LRSANKLPEQLNWKTWKENIF--SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
            +   ++      W    +       ++        W     + L         GG     
Sbjct: 1301 VHPDDREQVATKWTAAIQGEAYDIEHRIVVAGAVKWVREVAE-LEFDGKGELLGGF-GTV 1358

Query: 417  ENLTVQVDLETKY--------------NTLVKVQGET-----IDHL-------------S 444
            +++T +  +E +                 L +   +      ++ +             +
Sbjct: 1359 QDITDRKRMEQELILAKEKAEQRARIEERLAQAAQDLSTARDLESIMTVVRTSTRELTGA 1418

Query: 445  EGVAVFGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
            +GV+    DG         A   LWK +   +        I+         +   D++A 
Sbjct: 1419 DGVSFVLRDGDKCFYADEDAIEPLWKGQRFPMEMC-----ISGWVMLNRQTAVIKDIYAD 1473

Query: 503  IITSFDDERKSLQGTLELLS----------DSVLEYSIIPLPNAQT------------ML 540
                 D  R +   +L ++            +       P P+A              M 
Sbjct: 1474 PRIPMDTYRPTFVKSLAMVPVRSANPVAAIGAYWAAEHNPEPDAVRFLQSLADLASVAMD 1533

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                  +  +   AL  + E   +A   K+ F+ ++S+E+R+P+  I+G  +L       
Sbjct: 1534 NVRLYDELRQWADALEAQKEVAEQATRAKSEFLANMSHEIRTPMNGILGMNELALMRVS- 1592

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +S+  +Y+     S   LL+++NDILDL+ ++AG + L+     L D+L+   + ++ 
Sbjct: 1593 --DSQAREYLLLAKKSGLALLDIINDILDLSKIEAGKIALDQEPFDLRDVLDSTLKPLSL 1650

Query: 661  KMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------- 712
               E  + I   + D      + D+ RL Q+ + ++SNA+ FS +G  V +         
Sbjct: 1651 GADEKGLHIHHTLEDCAPQRLIGDKGRLRQVLTNLVSNAVKFSDQG-VVRVTVSNNGEAS 1709

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGG 770
            + D    +F+V + G  IP D   S+F  F         +  G GLGL+I    + L GG
Sbjct: 1710 SPDRTQLLFTVADQGIGIPPDKLASIFESFAQLKSSAHIKYGGTGLGLTICRQLVELMGG 1769

Query: 771  HVSISSSDEGVTTINCRI 788
             +   S     +T    I
Sbjct: 1770 SIWAESEVGKGSTFFFTI 1787



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/468 (14%), Positives = 141/468 (30%), Gaps = 68/468 (14%)

Query: 138  GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
            G+S  L A          +GR  G  A +    + G   E          L      F+ 
Sbjct: 975  GRSEPLYASVSAAPVQLPDGRQIG--AIVTFADI-GQRIEADRL------LRASEERFRA 1025

Query: 198  LFDSLDFLVWHRDQAGDILWANISYKKNTE----------TEGIVFQKAIGESRKLFKEE 247
             F+     + HR   G  +  N  Y +             ++ I     + E  +L    
Sbjct: 1026 TFEQAAVGIAHRGPGGVFIQMNDRYCEIVGRSREELLDLKSQDITHPDDVDEDFELTGRL 1085

Query: 248  IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI----DVSKEITVND 303
            +  ++ + S  ++   +  S        S  +  V    GE   AI    D+S      +
Sbjct: 1086 MSGQIDTYSREKRYLRKDDSPAWV----SLSVSLVKGPDGEPAYAIAVVQDISARKQAEE 1141

Query: 304  QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
            +     +        +  FD+N  L + N++   L     + L    ++ +LLE +R A 
Sbjct: 1142 RAESVAKFPEQNPYPVLRFDRNGTLLYANKASRLLVGSPESPLEK--TSGDLLETIRQAV 1199

Query: 364  KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQ 422
            ++ ++ + + +                     +G    + +   P    + ++  ++T  
Sbjct: 1200 RMGQRRDMEVF--------------------LDGSAYLLAIAPIPDQDYVNVYGMDVTAL 1239

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
              ++                   G          +  S+  +R         L+    + 
Sbjct: 1240 TRVQNALRESQADLDRAQTVAQTGSWRLDIRRNELIWSDETYRLFGIPHGTPLTYELFLS 1299

Query: 482  NIAATCSRYYN-------ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             +                + + +D+   I+ +     K ++   EL  D   E       
Sbjct: 1300 RVHPDDREQVATKWTAAIQGEAYDIEHRIVVA--GAVKWVREVAELEFDGKGELL----- 1352

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                  T  ++TD  R E+ L    E   +   I+   +   + +L +
Sbjct: 1353 --GGFGTVQDITDRKRMEQELILAKEKAEQRARIEER-LAQAAQDLST 1397



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 96/281 (34%), Gaps = 14/281 (4%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +       +       + ++T  I +FDQ++ L   N+   +++      LA   S  + 
Sbjct: 877  TARNEAQQRARELDAAISSMTEGIMLFDQDKRLVKINQVAQDMFGYTTEMLAL--SLKDR 934

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT------SNPR 409
               L +     + + + +         ++    +  + +P G++  +  +        P 
Sbjct: 935  AGPLLAETLDGQPVVFDSLPIMRAFGGETVRDMEIKYGIP-GRSEPLYASVSAAPVQLPD 993

Query: 410  G---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            G   G I  F ++  +++ +       +    T +  + G+A  GP G     N  +  +
Sbjct: 994  GRQIGAIVTFADIGQRIEADRLLRASEERFRATFEQAAVGIAHRGPGGVFIQMNDRYCEI 1053

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                   L      ++I        +      L +  I ++  E++ L+   +  +   L
Sbjct: 1054 VGRSREELLDLKS-QDITHPDDVDEDFELTGRLMSGQIDTYSREKRYLRKD-DSPAWVSL 1111

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
              S++  P+ +       V D    ++A        +  ++
Sbjct: 1112 SVSLVKGPDGEPAYAIAVVQDISARKQAEERAESVAKFPEQ 1152


>gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1364

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 99/614 (16%), Positives = 218/614 (35%), Gaps = 65/614 (10%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y+  T       +  +     ++          ++    +  ++   L  G         
Sbjct: 269 YRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAGFVASLNQSSPWLIGG--LVMAAAV 326

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +  +      +  + +E  +  Q+     ++ + + AI     +  +   N +   ++  
Sbjct: 327 LFAALLVLYFSNGLRREEVLRKQME-LAALVSHSSEAIVAETPDGRITHWNPAAEAMFGY 385

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                    + DE ++   +    P+            ++  ++   +   H  +G  +H
Sbjct: 386 ---------TADEAIDQDLTMLLSPQPYAMPEVDHADAALAGNASAAQTMRHR-DGHQVH 435

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVK------------------VQ 436
           V+ +  P         G    F +++ +V    +   L                    +Q
Sbjct: 436 VLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEHQVAERTSELVKFSVLQ 495

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT---------EENRLSPGTHIRNIAATC 487
              + H    +      G + L NPA   L            + ++      ++  A   
Sbjct: 496 RAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHML 555

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQ-----TML 540
           +          L A    +      + + T        L    ++  L +        + 
Sbjct: 556 AEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLG 615

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+  
Sbjct: 616 VAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE-- 673

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L       V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + +
Sbjct: 674 -LPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRS 732

Query: 661 KMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
            +    + + V          + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 733 SLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    + L GG +
Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852

Query: 773 SISSSDEGVTTINC 786
            + S     +    
Sbjct: 853 EVESVPGRGSEFYF 866


>gi|237713394|ref|ZP_04543875.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406767|ref|ZP_06083316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646034|ref|ZP_06723699.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810538|ref|ZP_06769191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446633|gb|EEO52424.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262355470|gb|EEZ04561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638605|gb|EFF56958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442302|gb|EFG11116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 512

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 162/375 (43%), Gaps = 16/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +ET      +   + +D+++  + V   D  ++  +N  FR              
Sbjct: 144 TKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPENAECWR 203

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +        ++  +    D                      ++        + +     
Sbjct: 204 MLNAGLENGCKHCPKPKLLDANRKFT------GVHFWEDYNPVTKRWYTIQSMAIKWLDG 257

Query: 539 MLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 258 RWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL 317

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L   +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV
Sbjct: 318 AETDEAEL---RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREV 374

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + + K  ++ + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +     
Sbjct: 375 IATFSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLE 434

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D     F V + G  IP++    +FNRFV      Q  G GLGLSI +S +   GG + +
Sbjct: 435 DESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVKRMGGKIGV 492

Query: 775 SSSDEGVTTINCRIP 789
            S +   +      P
Sbjct: 493 ESREGEGSCFWFTHP 507


>gi|39726361|gb|AAR30123.1| putative histidine kinase HHK6p [Gibberella moniliformis]
          Length = 1369

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 111/676 (16%), Positives = 244/676 (36%), Gaps = 91/676 (13%)

Query: 188  LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR----KL 243
            L   + +   L ++    +    + G + + N + +K  E E  +     G        +
Sbjct: 367  LQKMLLMKDALLNNTQMPILAMWKDGSVTFPNTAARKLFEKEAPLDTSLNGFDLLRYWHI 426

Query: 244  FKEEIKKR-------MISSSALEKNFCETVSTL--EHGNNKSYKIV-----RVLNSFGEA 289
            + E+  +R       +      EK F      +  E+ N + Y ++             A
Sbjct: 427  YTEDFSERFAVEDMPICKLLKTEKPFSGFRVGMYDENRNKRIYDVLGEAIRDDSTGEFLA 486

Query: 290  GI--AIDVSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            G+    DV+       Q+    E     I   +   +     +  + F N  F     + 
Sbjct: 487  GVVTGRDVTVMTEEITQIKERDEERFKLICDTMPQLVWTAMPDGMVDFWNTRFYTYTGLT 546

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTL 400
                      +         + LPE    + W+ ++     + +++   +     +G   
Sbjct: 547  PENSLGKSWVNAF-----HPDDLPEAH--RRWQHSL----DTGDSYVTEYRCQSKDGNWR 595

Query: 401  HVIVTSNPRGG--------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              +  + P+                ++   +  +       +     I H    +    P
Sbjct: 596  WYLGRALPQRNKETGKVEKWFGTCTDVHESIQTKMSAKRTRQQLLSVIAHSHVTIFTVDP 655

Query: 453  DGRIKL------SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            + R+ +       N             +    +   +    +    + +  +    I   
Sbjct: 656  NRRVTMLEGALIWNNTHEENHDGTRWFIGENMY--TVFNRLTAQLADGERPEFLEPIEL- 712

Query: 507  FDDERKSLQGTLELLSDSVLEYSIIPLPN--------------AQTMLTFVNVTDSVRAE 552
              D + +       + D       +P+                   +   ++VT+    E
Sbjct: 713  LLDGKATEDLKEHGIDDRWYRTRFLPMFGKRPQEGDATSDTYIEGVIGVIMDVTELKVRE 772

Query: 553  RALTEKNEALRKAD----------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             AL ++++  R+A            +K+ F+ ++S+E+R+P+T ++G  +LL       L
Sbjct: 773  EALEKQSKEKRRAMANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLS---GMQL 829

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +++Q +YVE I +S+T LL ++NDILD + V++G + +      L+ ++ EV + +   +
Sbjct: 830  DAEQQEYVENIQSSATSLLTVINDILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAV 889

Query: 663  HENNIRIKVISDG---KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
               N+  +             + D  R+ QI + +L+N++ F+++G       A      
Sbjct: 890  ERKNLDFQSDIGDGIENDLVVIGDPGRVRQILTNLLTNSIKFTNQGYVRFSVTAEKETSE 949

Query: 718  --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              +  F+V+++G  I +D+ K +F  F        RR  G GLGL+I ++ ++L  G +S
Sbjct: 950  SIEVRFTVEDSGIGIQDDVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIS 1009

Query: 774  ISSSDEGVTTINCRIP 789
            + S+    T     IP
Sbjct: 1010 LESNVGVGTRATFWIP 1025



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 93/316 (29%), Gaps = 43/316 (13%)

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             G    A   S    +   L     +L+N  + I    ++  + F N +  +L+E +  
Sbjct: 351 PMGPPSFATHSSTPSLLQKMLLMKDALLNNTQMPILAMWKDGSVTFPNTAARKLFEKEA- 409

Query: 345 FLATNPSNDEL--LEFLRSANKLPEQLNWKTWKENI--------------FSVYKSSETH 388
                P +  L   + LR  +   E  + +   E++              F V    E  
Sbjct: 410 -----PLDTSLNGFDLLRYWHIYTEDFSERFAVEDMPICKLLKTEKPFSGFRVGMYDENR 464

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGV 447
               +   G+ +    T     G +    ++TV  +  T+     + + + I D + + V
Sbjct: 465 NKRIYDVLGEAIRDDSTGEFLAGVV-TGRDVTVMTEEITQIKERDEERFKLICDTMPQLV 523

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENR-----LSPGTHIRNIAATCSRYYNESDGWDLFAA 502
               PDG +   N  F +                  H  ++     R+ +  D  D +  
Sbjct: 524 WTAMPDGMVDFWNTRFYTYTGLTPENSLGKSWVNAFHPDDLPEAHRRWQHSLDTGDSYVT 583

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                    +S  G         L     P  N +T               ++  K    
Sbjct: 584 EYRC-----QSKDGNWRWYLGRAL-----PQRNKETGKVEKWFGTCTDVHESIQTK---- 629

Query: 563 RKADEIKNSFVQHVSY 578
             A   +   +  +++
Sbjct: 630 MSAKRTRQQLLSVIAH 645


>gi|302342723|ref|YP_003807252.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301639336|gb|ADK84658.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 1336

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 113/590 (19%), Positives = 221/590 (37%), Gaps = 39/590 (6%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           ++      +    Q        L +      +I    + +          H +     + 
Sbjct: 355 AFFTERPADHPAAQGLPPGHLPLTRFLSAPAIIDDHLVGQIALANAGRPYHDD----DLK 410

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELW 339
            V        +AI   + +T        Y +L  N +  I   D    + + + +  +L 
Sbjct: 411 AVTRIADLYALAIQRQEAMTALRDSERKYRLLADNSSDTIWTADLGLRIDYISPAVHDLL 470

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 +      D +    RS  K+ + L  +  +E        S   +      +GQ 
Sbjct: 471 GYTPEEVLKLSVTDLI--SARSLIKIQQLLRDELAREASQPGSSPSHALELEHTRKDGQI 528

Query: 400 LHVIVTSN----PRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           + V V++     P G   G +    ++T +   +           +  D + + V     
Sbjct: 529 IVVEVSARFLRGPDGRPVGLLGSSRDVTQRRKAQDDLAESESRYRDLFDSIEDFVYSHDE 588

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-------IIT 505
           DG +  +N A  +       R+   +     A    + +++     L          ++T
Sbjct: 589 DGVLISANKALAAAVGRPRQRIIGHSIAEFTAERLRQNFHDIYLRQLRETGQHEGLFVLT 648

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S D + + ++    +  D                 +  +VT+     R L    E    A
Sbjct: 649 SQDGQARHVEYYTSMGRDRS--------GGIIYRGSAHDVTERRHLTRQLQRAKEEAEAA 700

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K+ F+ ++S+E+R+P+  IIG T+L   + + SL  +Q++++  + +++  L+ L+ 
Sbjct: 701 SRAKSDFLANMSHEIRTPMNAIIGMTNL---TLMTSLTREQTEFLGTVKSAAESLMQLLG 757

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADR 684
           DILDL+ ++A  + L      L DLL    + +A + H   + +   ++ G  G    D 
Sbjct: 758 DILDLSKIEARQLALENVEFDLADLLEATLRDLAVRAHGKGLELIGRMAPGAPGRLRGDP 817

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG-DFIFSVKNNGSSIPEDMCKSVFN 740
            RL QI   ++ NA+ F+  G  ++   L+A  DN  +  FSV + G  I  +    VF+
Sbjct: 818 LRLRQILVNLVGNAIKFTDHGQVLVEARLEAMADNKLEMRFSVVDTGVGIEPENIGRVFD 877

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           RF        RR  G GLG +I +    L GG + + S+    +  +  I
Sbjct: 878 RFTQADSSSTRRFGGTGLGAAISKELCELMGGRIWVESTPGRGSAFHFTI 927



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 29/201 (14%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
             H ++L       RK+GQ   +V E         +GR  G         L G   ++ +
Sbjct: 513 PSHALELEHT----RKDGQ--IIVVEVSARFLRGPDGRPVG---------LLGSSRDVTQ 557

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                  L+   S ++ LFDS++  V+  D+ G ++ AN +        G   Q+ IG S
Sbjct: 558 RRKAQDDLAESESRYRDLFDSIEDFVYSHDEDGVLISANKA---LAAAVGRPRQRIIGHS 614

Query: 241 RKLFKEEIKKR------MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI--- 291
              F  E  ++      +       ++    V T + G  +  +    +      GI   
Sbjct: 615 IAEFTAERLRQNFHDIYLRQLRETGQHEGLFVLTSQDGQARHVEYYTSMGRDRSGGIIYR 674

Query: 292 --AIDVSKEITVNDQLTHTYE 310
             A DV++   +  QL    E
Sbjct: 675 GSAHDVTERRHLTRQLQRAKE 695



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 31/248 (12%)

Query: 339 WEIDLAFLAT---NPSND-ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
           +++DLA +      P +  E    LR A+ LP  + +  W ++   + ++       + L
Sbjct: 47  FDVDLALVDAALPGPLDGVETARLLREAHALP--VVFMAWPDDRGLLERAKHAGPFGYLL 104

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
                          G      E    Q   E++     +     ++ +++G+      G
Sbjct: 105 ----------RPFSDGELRVALEMGLHQAQAESRLRESERRFRYVVEGVADGIWALDEFG 154

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
                N   R +    +  L+  +            +  +    L   +      + +  
Sbjct: 155 FTSFGNARLRQILGRGQQELTQKSAFE--------LFEPATAGVLRQNLARCRSGQGEPF 206

Query: 515 QGTLELLSDSVLEYSIIPLPN-------AQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           + +       +++    P P           +L   +V+   RA+R L  ++   +    
Sbjct: 207 ELSFTTPQGRLVQALFSPRPMLDRLGAPRGVILAITDVSALKRAQRGLEWQSRVDQALAR 266

Query: 568 IKNSFVQH 575
           I +  +  
Sbjct: 267 IADVLLHS 274


>gi|160896184|ref|YP_001561766.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160361768|gb|ABX33381.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 841

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 107/527 (20%), Positives = 204/527 (38%), Gaps = 37/527 (7%)

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
            R +    +  +    ++      ++      +  L   I   D +  L F N  + +  
Sbjct: 326 TRRVQQSAQQAMEKAQARIARSEHEMAVLMRSVQEL---IFRTDSHGRLTFVNARWEQWT 382

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
               A     P    + E  R   +       K    N  + ++          LP+ + 
Sbjct: 383 GQPSAEAVGQPLEGIVHEACRPQIQALLDPQAKLALRNCQARFR----------LPDERE 432

Query: 400 L--HVIVTSNPRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           +   + V    R G +  F     ++T +   + +  T +  Q    +     + V   D
Sbjct: 433 ILCDIAVVPLLREGRLVGFAGSAVDVTARWKAQQELQTQLAFQHLLFETTPLPMLVTDAD 492

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R+ L N A+   +      +  G  +  + +            D+  +       +   
Sbjct: 493 QRVALVNKAWEDFFGRGRYAVL-GNEVEGLHSGDHDLLQMHSNQDVMRS------GQPMV 545

Query: 514 LQGTLELLSDSVLEYSII--PLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKAD 566
           L+  L  +  S  +  I    + NAQ  +T     FV+V++   AE A  E  +A  +A 
Sbjct: 546 LEARLPHVDGSYRDVQISKAAVKNAQGRITGVLSIFVDVSEFRAAEHATHEARDAAEEAF 605

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K+ FV ++S+ELR+PL +I+GF +L         N+  ++    I A+   +L LVND
Sbjct: 606 RVKSEFVANMSHELRTPLQSIMGFAEL--GGLRSHGNAAMAEMFSDIHAAGQRMLALVND 663

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD+A +++ +  ++     L  L+  V + +  +     I +++  D       AD  R
Sbjct: 664 LLDVAKLESAVGTIHLERTDLRSLIRPVVRELEPQQQHKLIDLRLELDDTPLIAKADPVR 723

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             Q+   +L+NA+ FS  G  + ++   D  GD   +V + G  IP      +F  FV +
Sbjct: 724 FQQVVRNVLANAIKFSPIGGRIDVQGRIDGQGDICIAVSDQGPGIPPQELDKIFQPFVQS 783

Query: 746 AHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +       G GLGL+I    I+   G +  S+   G       +P++
Sbjct: 784 SKTKNGSGGTGLGLAICRKIIDAMDGTIVASNGPAGGAMFCITLPTR 830



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 75/274 (27%), Gaps = 31/274 (11%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP--EIIGQLHQRIDIP 106
                ++      + E+  +   +  L   N      W+     P  E +GQ  + I   
Sbjct: 345 ARSEHEMAVLMRSVQELIFRTDSHGRLTFVNAR----WEQWTGQPSAEAVGQPLEGIVHE 400

Query: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL 166
                + +    L     + L     + R   +    +        +  EGR+ G     
Sbjct: 401 ACRPQIQAL---LDPQAKLALRNCQARFRLPDE--REILCDIAVVPLLREGRLVG----- 450

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
                 G   ++       ++L   ++   +LF++    +   D    +   N +++   
Sbjct: 451 ----FAGSAVDVTARWKAQQELQTQLAFQHLLFETTPLPMLVTDADQRVALVNKAWEDFF 506

Query: 227 ETEGIV----FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                       + +        +    + +  S         +  +  G+ +  +I + 
Sbjct: 507 GRGRYAVLGNEVEGLHSGDHDLLQMHSNQDVMRSGQPMVLEARLPHV-DGSYRDVQISKA 565

Query: 283 LNS------FGEAGIAIDVSKEITVNDQLTHTYE 310
                     G   I +DVS+            +
Sbjct: 566 AVKNAQGRITGVLSIFVDVSEFRAAEHATHEARD 599


>gi|323340910|ref|ZP_08081159.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644]
 gi|323091572|gb|EFZ34195.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644]
          Length = 626

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 167/424 (39%), Gaps = 39/424 (9%)

Query: 385 SETHKDTWHLPNGQT---LHVIVTSNPRGGTIWMFENLTVQVD-LETKYNTLVKVQGETI 440
            E  K T  + +G     +HV  T +  G       NL+V+V+  +   ++  +     +
Sbjct: 216 DEMKKQTMQIADGDYSGKVHVYGT-DELGQLAQAVNNLSVRVEEAQESSDSERRRLDSVL 274

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            H+S+GV      G I + N          E++   GT I ++           +  +  
Sbjct: 275 SHMSDGVIATDRRGNISIINDMACEYLDV-ESKDVIGTSILDVLKI-REMQTMRELIENQ 332

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             II    D             D +L      +      ++ +        E+       
Sbjct: 333 DGIIVDMSDAGH----------DQILNAYFSTIQRESGFISGLVCVLHDVTEQQ------ 376

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              K D  +  FV +VS+ELR+PLT++  + + L              +++     +  +
Sbjct: 377 ---KIDRERRQFVSNVSHELRTPLTSMRSYIEALNDGAWKD-PEVAPSFLKVTQDETDRM 432

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE----------NNIRIK 670
           + ++ND+L L+ +D+G +KL++  + LN+L N +       + +           N  IK
Sbjct: 433 IRMINDLLSLSRMDSGTVKLDFELVNLNELFNYILNRFDMMLKKDNNDTRETKSKNYTIK 492

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                +      D  + +Q+   I++NA+ +S  G  +  +    +   I S+ + G  I
Sbjct: 493 RDFTKRDLWVEIDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNHVILSITDQGLGI 552

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      +F+RF  V  A    + G GLGL+I +  I +H G + + S +   +T    +
Sbjct: 553 PRKDLGHIFDRFFRVDKARSRAQGGTGLGLAISKEVIEMHHGKIWVDSIEGKGSTFYISL 612

Query: 789 PSKE 792
           P +E
Sbjct: 613 PYEE 616



 Score = 38.0 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 56/169 (33%), Gaps = 34/169 (20%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + + + +      +L +++  +   D+   +   N    E  +++   +      D L
Sbjct: 258 EAQESSDSERRRLDSVLSHMSDGVIATDRRGNISIINDMACEYLDVESKDVIGTSILDVL 317

Query: 356 -LEFLRSANKLPEQLNW------KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            +  +++  +L E  +           + I + Y S+   +  +                
Sbjct: 318 KIREMQTMRELIENQDGIIVDMSDAGHDQILNAYFSTIQRESGF---------------- 361

Query: 409 RGGTIWMFENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEG 446
             G + +  ++T Q  +D E +           T +      I+ L++G
Sbjct: 362 ISGLVCVLHDVTEQQKIDRERRQFVSNVSHELRTPLTSMRSYIEALNDG 410


>gi|297619344|ref|YP_003707449.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
 gi|297378321|gb|ADI36476.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
          Length = 654

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 137/259 (52%), Gaps = 4/259 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + N  +    ++ T   +  + L++  + L++ D +K+  +   S+ELR+PLT++ G+ +
Sbjct: 373 IFNKMSDEISISHTKLQKHAQELSKSYDELKELDNLKSDLIAIASHELRTPLTSVKGYVE 432

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+    +G +N  QS+ +   + +   L  L++ +LDL+ ++ G +++    + +   ++
Sbjct: 433 LVLDGTMGEVNEAQSKCLSIANDNIDRLRRLIDSMLDLSKIERGELQMQKELMNMKVAVD 492

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV +++     E NIR+  + D +  S   D+ RL+Q+ + ++ NA+ F+     + L A
Sbjct: 493 EVFENLKPLFDEKNIRL--VKDVQNLSLYGDKDRLMQVITNLVENAIKFNPTNGEIYLGA 550

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
             D G+    V+++G+ IPE   + +F+RF       +R   G GLGL++ +S +  H G
Sbjct: 551 YEDEGNIHLIVQDHGAGIPEKDLEKIFDRFYQVDSSSKRPKGGSGLGLAVCKSIVEAHEG 610

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S     +T +  +P
Sbjct: 611 IIWVESELGKGSTFHVILP 629


>gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1079

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 135/705 (19%), Positives = 245/705 (34%), Gaps = 96/705 (13%)

Query: 156 EGRVSGSCAFLR-ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            GR+ G     R I     I  EL + T + + + N +     + D     +   +  G 
Sbjct: 107 TGRLRGCVHIARDISHHKKIQEELQDRTERMQAVMNSMDSLVYVADMQTHEILFINDYGR 166

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
               N+ Y    +   I+ + A G         +               E       G +
Sbjct: 167 ---KNLGYVTGMKCWEIMQKGASGPCPDCGNHLLLD--GQGRPTGTRVREH---YNSGED 218

Query: 275 KSYKIVRVLNSFGEAG-----IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
           + Y +      + +       IA D+++E    ++       L +   +  I D      
Sbjct: 219 RWYILRDKAIPWKDGRLVRLQIATDITQEKKDREKQERFKAALDSSADSFFIIDCESM-- 276

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ--LNWKTWKENIFSVYKSSET 387
                F+++  +    L    S +ELL       K PE    + +   +++    + +  
Sbjct: 277 ----KFLDVNLMACQSLGY--SREELLNMGPHDLK-PEFTFQDMQEICDSVNEDREQAGL 329

Query: 388 HKDTWHLPNGQTLHVIV-----TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID- 441
            K      +G+   V V         R   I +  ++T     E      +K+    +D 
Sbjct: 330 IKTLHRTKDGRDFPVEVSLRTFRQRERDLIIAVARDITEFKKAEDALRYRMKMHRLLVDM 389

Query: 442 --------------HLSEG---VAVFGPDGR-----IKLSNPAFRSLWKTEENRLSPGTH 479
                          +SE    VA F    R         N    +  +     + P  H
Sbjct: 390 SMVFLTAPIDYLEKAVSEALMQVARFTRTDRTYVFAYDFHNQTMTNTHEWCAAGVDPQQH 449

Query: 480 -IRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            ++N+            S G   +   I    D    L+  L+      L    +PL + 
Sbjct: 450 RLQNVPFDMAWEPVRLHSQGSPYYIGDIEEMPDW-DPLKTHLQKQDTKAL--LSVPLKDH 506

Query: 537 QTML------TFVNVTDSVRAE---------------------RALTEKNEALRKADEIK 569
                           +  RAE                       L +       A   K
Sbjct: 507 FHCYGFLGVDCVRETREWTRAEIDLFVLLAELLVNARHRKSREEELNQARLQAEHATRAK 566

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+PL  +IG + LL  ++   L+S+Q  + E +  S+  LLNL+NDILD
Sbjct: 567 SEFLANMSHEIRTPLNGVIGMSGLLLDTE---LDSQQRSFAETLKTSAQTLLNLINDILD 623

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLL 688
           L+ ++A  ++L      L   + +    +  +  E  +++  VI  G     + D  RL 
Sbjct: 624 LSKIEADRLQLETKGFNLETTVKDSAGILNYQAMEKGLKLGYVIHPGVHHCLLGDEGRLS 683

Query: 689 QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+   +L NA+ F+S+G   +    ++   D+   +F V + G  IPE+    +F  F  
Sbjct: 684 QVLVNLLGNAIKFTSQGQVDLEVSPVQEEADHVRLLFEVHDTGIGIPEEKQDQLFTPFHQ 743

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 R   G GLGL+I +S + + GG + + SS    +T    
Sbjct: 744 LNTSVTRSFGGTGLGLAICKSLVQMMGGEIGVKSSKGRGSTFWFT 788



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 67/264 (25%), Gaps = 19/264 (7%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           KE     +L         +   IAI D    +   NRS  +   ++          + + 
Sbjct: 5   KEADSEGRLWQF--TFDAVPDLIAILDAGHNVVRINRSMADALGVEPWQAQGRKCYELVH 62

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----G 411
              R         ++    + + S    +    ++W        HV             G
Sbjct: 63  GMSR-------PPDFCPHAKLLCS---GNAEQAESWIDNLNGHFHVSTNPLHDSTGRLRG 112

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTE 470
            + +  +++    ++ +     +     ++ +   V V       I   N   R      
Sbjct: 113 CVHIARDISHHKKIQEELQDRTERMQAVMNSMDSLVYVADMQTHEILFINDYGRKNLGYV 172

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                     +  +  C    N            T   +   S +    +L D  + +  
Sbjct: 173 TGMKCWEIMQKGASGPCPDCGNHLLLDGQGRPTGTRVREHYNSGEDRWYILRDKAIPWKD 232

Query: 531 IPLPNAQT-MLTFVNVTDSVRAER 553
             L   Q          D  + ER
Sbjct: 233 GRLVRLQIATDITQEKKDREKQER 256



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 65/422 (15%), Positives = 141/422 (33%), Gaps = 62/422 (14%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLF 244
           K+  +   +++  FD++  L+   D   +++  N S     +  G+   +A G    +L 
Sbjct: 5   KEADSEGRLWQFTFDAVPDLIAILDAGHNVVRINRS---MADALGVEPWQAQGRKCYELV 61

Query: 245 KEEIKKRMISSSAL---EKNFCETVSTLEHGNNKSYKIVRVLNSF-----GEAGIAIDVS 296
               +       A      N  +  S +++ N   +     L+       G   IA D+S
Sbjct: 62  HGMSRPPDFCPHAKLLCSGNAEQAESWIDNLNGHFHVSTNPLHDSTGRLRGCVHIARDIS 121

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFD-QNRYLQFHNR---------SFVELWEID 342
               + ++L    E    +++++   + + D Q   + F N          + ++ WEI 
Sbjct: 122 HHKKIQEELQDRTERMQAVMNSMDSLVYVADMQTHEILFINDYGRKNLGYVTGMKCWEI- 180

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           +   A+ P  D     L      P           +   Y S E   D W++     L  
Sbjct: 181 MQKGASGPCPDCGNHLLLDGQGRPTG-------TRVREHYNSGE---DRWYI-----LRD 225

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSN- 460
                  G  + +   +   +  E K     +     +D  ++   +   +  +    N 
Sbjct: 226 KAIPWKDGRLVRL--QIATDITQEKKDREKQERFKAALDSSADSFFIIDCESMKFLDVNL 283

Query: 461 PAFRSLWKTEENRLSPGTH-------IRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            A +SL  + E  L+ G H        +++   C     + +   L   +  + D     
Sbjct: 284 MACQSLGYSREELLNMGPHDLKPEFTFQDMQEICDSVNEDREQAGLIKTLHRTKDGRDFP 343

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++ +L        +  I             ++T+  +AE AL  + +  R   ++   F+
Sbjct: 344 VEVSLRTFRQRERDLIIA---------VARDITEFKKAEDALRYRMKMHRLLVDMSMVFL 394

Query: 574 QH 575
             
Sbjct: 395 TA 396


>gi|288957737|ref|YP_003448078.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910045|dbj|BAI71534.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 767

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 164/386 (42%), Gaps = 8/386 (2%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           T ++      +   + +     +     +D + + V  F  +GRI   N A   ++   E
Sbjct: 355 TAFIVRQHARREQDQARLARASRRIRGILDSMLDAVVTFDSNGRIITFNRAAELMFGMPE 414

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFA---AIITSFDDERKSLQGTLELLSDSVLEY 528
           +R+  G  I  +        ++ D   L     A   SF      L G     +      
Sbjct: 415 HRM-VGQPIEALIPGARGGADDRDLTALRRDGHAFPVSFTVGDLRLDGGPCTPAALPAAL 473

Query: 529 S-IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             + P      +    ++T   + E  L         A+  K  F+ ++S+ELR+PL  I
Sbjct: 474 GGVRPDEPRICVGVIRDMTRRKQQEAELIASKTQAELANRAKTEFLANMSHELRTPLNAI 533

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF ++L +   G++N +Q   +  I  S   LL++VN +LD++ ++ G   L+  ++  
Sbjct: 534 IGFAEVLSSEFFGTVNERQKSCITDIHDSGRHLLDIVNAVLDMSKLEFGQFDLSEESVEA 593

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           ++ + +    +  +     I I       +     DR+   Q+   +LSNA+ F+  G  
Sbjct: 594 HEAIGQCLMMVRDRAAAAGIAIHNEVTAAIALLWVDRRAFKQVILNLLSNAVKFTPDGGQ 653

Query: 708 VILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
           + + A  + +G F  +V + G  IP      +F  F    +    +  G GLGLSI ++F
Sbjct: 654 ITVSAGLEADGGFRLTVADTGIGIPAAFMADLFQPFRQAENTANRRYEGTGLGLSISKNF 713

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           I+LHGG +S  S     T++  R+P+
Sbjct: 714 IDLHGGTLSCQSGLGAGTSMTVRLPA 739



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 68/268 (25%), Gaps = 38/268 (14%)

Query: 208 HRDQAGDIL-WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
            R+  G +  W  +        E  +      +   +    I   +      +  F    
Sbjct: 263 QRNGLGGLSDWPAVRAALAAHDEATIRTAFPAQPASIGASGIDSLVSVRRVRDYPFVIVA 322

Query: 267 STLEHGN-NKSYKIVRVLNSFGEAG--------------IAIDVSKEITVNDQLTHTYEI 311
           +        +  +   V    G                  A     +  +         I
Sbjct: 323 TLPVDAALREWRRNTAVWTGIGAVMTIAIALLTAFIVRQHARREQDQARLARASRRIRGI 382

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L ++  A+  FD N  +   NR+   ++ +    +   P    +   +  A    +  + 
Sbjct: 383 LDSMLDAVVTFDSNGRIITFNRAAELMFGMPEHRMVGQP----IEALIPGARGGADDRDL 438

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT--------IWMFENLTVQV 423
              + +  +      +        +G            GG         + +  ++T + 
Sbjct: 439 TALRRDGHAF---PVSFTVGDLRLDGGPCTPAALPAALGGVRPDEPRICVGVIRDMTRRK 495

Query: 424 DLETKYNT-------LVKVQGETIDHLS 444
             E +            + + E + ++S
Sbjct: 496 QQEAELIASKTQAELANRAKTEFLANMS 523


>gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 846

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 171/423 (40%), Gaps = 49/423 (11%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-- 469
              +F  +  ++    + N  + +     D    GV +    G+I  +N  +  +     
Sbjct: 244 LALLFGQVFGRLQHSLRDNEQLALVANGTDA---GVLIADRTGQIVWANAGYLRMTGLER 300

Query: 470 --EENRLSPGTHIRNIAATCSRYYNES----------------DGWDLFAAI-ITSFDDE 510
              E RL     +R+      +   ES                 G   +A+I I    D 
Sbjct: 301 EDIEGRLPRDILVRHAGIGALKILAESAADGEGRNVEMIGLTKQGTQYWASIEIRPVRDA 360

Query: 511 RKSLQGTLELLSD-------------SVLEYSIIPLPNAQT-MLTFVNVTDSVRAERALT 556
           + S++  + + +D             S LE     L    T +          R  + L+
Sbjct: 361 KGSIRNYIVVENDVSRAKQTEIKLKRSQLELQDRVLDLQHTSLQLEQERAKLTRTAQDLS 420

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              EA   A+  K++F+  +S+ELR+P+  ++G  DLL +   G L  +Q   V  I  S
Sbjct: 421 IAKEAAENANRAKSAFLATMSHELRTPMNGVLGMADLLLS---GPLTQEQRDGVTTIRES 477

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL ++NDILDL+ ++AG ++L         +L  V + +     E  + +    +G 
Sbjct: 478 GECLLTILNDILDLSKLEAGRLELEPEPTSPMTVLETVVEVLRPNAKEKGLVLTKSEEGH 537

Query: 677 LGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSI 730
           +    ++D  RL QI   ++ NA+ F+ +G   +  AAR     D  + +F+V++ G  I
Sbjct: 538 IPQRIMSDPTRLRQILFNLVGNAIKFTPQGEVSVSLAARACDDPDTAELVFTVRDTGIGI 597

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE M   +F RF            G GLGL+I      L  G + + S++   +    R+
Sbjct: 598 PEAMLPRLFTRFQQADSSISRTYGGTGLGLAITRELTTLMNGTIEVESTEGKGSCFTVRL 657

Query: 789 PSK 791
           P +
Sbjct: 658 PVR 660


>gi|325929297|ref|ZP_08190428.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325929316|ref|ZP_08190447.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540319|gb|EGD11930.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540338|gb|EGD11949.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
          Length = 648

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 102/514 (19%), Positives = 197/514 (38%), Gaps = 57/514 (11%)

Query: 308 TYEILHNLTVAIAI----FDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFL 359
            +EI HN+     +    FD  + + +     N +F     +    L  +          
Sbjct: 2   YHEIFHNIDAGFCVIDMVFDGEQAVDYVIRTTNGAFERYTGLSPNALNVSI--------- 52

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWM 415
              N LPE    + W +    V ++    H +       +   V    V    +     +
Sbjct: 53  --RNLLPEHE--QEWFDRYGHVARTGNRIHFEMQAKALKRWYSVDAFRVGQPEQARVAIL 108

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F ++T +  +E +            D L   V V    G ++  N A+   +  + +  +
Sbjct: 109 FMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT 168

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIP 532
                    +  S   +  D       +  S  ++R           D     +E +  P
Sbjct: 169 --------VSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQWRWIEMTATP 220

Query: 533 LPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYEL 580
             +A      +  +     E R +    E L +++            +K+ F+  +S+EL
Sbjct: 221 RYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHEL 280

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVDAGIM 638
           R+PLT I+G+++LL       +   Q  Y  +  I++S+     L++D+LDL+++  G +
Sbjct: 281 RTPLTTILGWSELLLQR----VEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKV 336

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L   ++ L + + E   +        +  +++         + D  RL Q+   +LSNA
Sbjct: 337 QLEVESLDLVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNA 396

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + F+     + +K  RD+G  + SV ++G  I  +    +F RF        R   G+GL
Sbjct: 397 IKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGL 456

Query: 757 GLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           GL+IV+  + +HGG V  +S       T   R+P
Sbjct: 457 GLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 490



 Score = 58.0 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +      ++ T  
Sbjct: 111 DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVS 170

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +    +    F+ E+   +     L             G  +  ++           
Sbjct: 171 AWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRH---DGQWRWIEMTATPRYSADGR 227

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G AG + DV+++  +        E
Sbjct: 228 FIGLAGSSPDVTEQREIELAREQLLE 253



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 28/237 (11%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N ++++ T         +I       ++E   R                       + Y 
Sbjct: 34  NGAFERYTGLSPNALNVSIRNLLPEHEQEWFDR--YGHVARTGNRIHFEMQAKALKRWYS 91

Query: 279 IVRV----LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
           +             A + +D+++   V  +L  +      L   +     + D    ++F
Sbjct: 92  VDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRF 151

Query: 331 HNRSFVELWEIDL------AFLATNPSNDELLEFLRSANKLPEQLNWKTW--KENIFSVY 382
            N ++ E + +D+      A+      +D        A  L EQ   +           +
Sbjct: 152 VNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQW 211

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +  E      +  +G+ +          G      ++T Q ++E     L++ +   
Sbjct: 212 RWIEMTATPRYSADGRFI----------GLAGSSPDVTEQREIELAREQLLESERSA 258


>gi|298489942|ref|YP_003720119.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
            0708]
 gi|298231860|gb|ADI62996.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
            0708]
          Length = 1138

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 128/795 (16%), Positives = 273/795 (34%), Gaps = 91/795 (11%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE------TPEIIGQ 98
            I  R +    + E+  +   + + +  Y   + +     + W+   E        EIIG 
Sbjct: 385  IHDRVTAEIALRESEEYFRLLVEGVKDYAIYMLDPEGRVMSWNSGAECMTGYQAAEIIG- 443

Query: 99   LHQRIDIPQTDTDLLSFENWLKFHHY------IKLSKATEKLRKEGQSFDLVAETQNDCA 152
                        D   F                +L  A+   R E +S            
Sbjct: 444  -----------RDFACF---FPPEDIANAMPKQQLEAASVNSRCESES----------IF 479

Query: 153  IKIEGRVSGSCAFL--------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
            ++ +G    +   L         +     +  ++ E  L  K L       +   D +  
Sbjct: 480  VRKDGSYFWANCILTALHDDTGELRGFCKLTRDITERKLTEKSLLRLQKAIESTSDGIS- 538

Query: 205  LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE 264
                 + +G +++ N ++ +  +  GI      G        ++ + ++++    +++  
Sbjct: 539  ---IANISGQVIYVNPAFTEVLDYTGIQLNTCGGLVTTFRNPKVFETVLATVHRGESWHG 595

Query: 265  TVST------LEHGNNKSYKIVRVLNSF-GEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
             V+           + ++  I            I  D+++   + + L      +   + 
Sbjct: 596  EVTMQAQSGDYVQVDLRTDAIKDTTGKIVYLVSIYTDITQRRFIEEGLRLRDRAIAASSN 655

Query: 318  AIAIFD---QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP--EQLNWK 372
             I I D    +  + + N +F  +      + A          FL +    P  EQ+   
Sbjct: 656  GIIIADITIPDGSITYVNPAFERMTG----YTAAEVMRQNFRLFLGADINQPALEQMKIA 711

Query: 373  TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDL 425
                    V   +       +  +G      +  +P           I +  ++T +   
Sbjct: 712  MQTGQDCKVILRN-------YRKDGSLFWHELNISPVYDTEACLTHYIGIQTDITQRKQA 764

Query: 426  ETKYNTLVKVQGETIDHLSEGVA---VFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIR 481
            ET      +     +      +         G + +SN       ++ +E     G    
Sbjct: 765  ETALLVTQQRLQYLLSASPAVIYTSEAMRDYGTVFISNNIKGMVGYEAQEFVKDSGFWFS 824

Query: 482  NI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQ 537
            +I     S    E     +F     S +       GT   + D    V + +  PL   +
Sbjct: 825  HIHPEDASDVLAELSQVQVFDKKQYSLEYRFLHADGTYRWIYDQGKVVWDKAGNPL---E 881

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +  + ++T   + E+ L    E  ++ +E+K+ F+   S+E R+PL+ I+   +LL+  
Sbjct: 882  LVGYWADITSRKQLEQELRTALEKEKELNELKSRFISMTSHEFRTPLSTILSSAELLEHY 941

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                   K   ++  I  +   +  +++DIL +   +AG ++       L +   ++ + 
Sbjct: 942  HQRWTEEKLLIHLRRIQTAVHRMTEMLDDILVIGKAEAGKLEYKPLFFDLVEYCRQLVEE 1001

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            +   +   ++ I   S  K  S   D + L  I S +LSNA+ +S  GS V    A  N 
Sbjct: 1002 VRLNLKSQHL-IFFTSQCKSISCYMDDKLLGYILSNLLSNALKYSPDGSLVRFTLACKNE 1060

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +  +++ G  IPE+    +F  F    + G   G GLGL+IV+  +++H G +  +S 
Sbjct: 1061 QAVLKIQDQGIGIPEENQPRLFESFYRANNVGNILGTGLGLAIVKKCVDIHNGEIYFTSQ 1120

Query: 778  DEGVTTINCRIPSKE 792
                T    ++P ++
Sbjct: 1121 LGIGTQFTVKLPVEK 1135



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 115/359 (32%), Gaps = 51/359 (14%)

Query: 145 AETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
            ET       I G+V G         + G   ++ +     + L      F+ L +S+  
Sbjct: 234 LETNKVPLHSIGGQVVG---------MLGTVQDVTQRKETQEALEKSEEWFRFLAESIPQ 284

Query: 205 LVWHRDQAGDILWANISYKKNTETEGIVFQKAIG-------ESRKLFKEEIKKRMISSSA 257
            VW  D  G++++ N    +  +  G   ++ +G           L           ++ 
Sbjct: 285 QVWIADADGNLVYMNQ---RVLDGFGSTRERVLGGKWTQWVHPDDLPNVVNVWNQSLATG 341

Query: 258 LEKNFCETVSTLEHGNNKSY--KIVRVLNSFG----EAGIAIDVSKEITVNDQLTHTYEI 311
           +       +     G    +  + + + +  G      G   D+   +T    L  + E 
Sbjct: 342 INYEVEFRLFQKPSGTYHWHMGRALALRDRQGKIVNWFGTNTDIHDRVTAEIALRESEEY 401

Query: 312 LHNLTVAI---AIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
              L   +   AI+  D    +   N     +     A         E++    +    P
Sbjct: 402 FRLLVEGVKDYAIYMLDPEGRVMSWNSGAECMTGYQAA---------EIIGRDFACFFPP 452

Query: 367 EQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLH---VIVTSNPRGGTIWMF----EN 418
           E +     K+ + +   +S    +  +   +G       ++   +   G +  F     +
Sbjct: 453 EDIANAMPKQQLEAASVNSRCESESIFVRKDGSYFWANCILTALHDDTGELRGFCKLTRD 512

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +T +   E     L     + I+  S+G+++    G++   NPAF  +      +L+  
Sbjct: 513 ITERKLTEKSLLRL----QKAIESTSDGISIANISGQVIYVNPAFTEVLDYTGIQLNTC 567



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 99/299 (33%), Gaps = 31/299 (10%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSS 256
           + D++   ++ +D     L  N ++ K    E    +  +G+    L  +  +     ++
Sbjct: 152 IMDTIPHGIFWKDIHSVFLGCNRNFAKMVGFEN--PEDIVGKTDFDLVVDPEQAEFYDAT 209

Query: 257 ALEKNFCETVSTLE----HGNNKSYKIVRVLNS------FGEAGIAIDVSKEITVNDQLT 306
            +E N  E    +      G+    +  +V          G  G   DV++     + L 
Sbjct: 210 LMEANQPEYYQIIPKQQADGSQIWLETNKVPLHSIGGQVVGMLGTVQDVTQRKETQEALE 269

Query: 307 HTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            + E       ++   + I D +  L + N+  ++ +      +        +       
Sbjct: 270 KSEEWFRFLAESIPQQVWIADADGNLVYMNQRVLDGFGSTRERVLGGKWTQWV-----HP 324

Query: 363 NKLPEQLNWKTWKENIFS------VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           + LP  +N   W +++ +       ++  +    T+H   G+ L +              
Sbjct: 325 DDLPNVVN--VWNQSLATGINYEVEFRLFQKPSGTYHWHMGRALALRDRQGKIVNWFGTN 382

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            ++  +V  E       +     ++ + +  + +  P+GR+   N     +   +   +
Sbjct: 383 TDIHDRVTAEIALRESEEYFRLLVEGVKDYAIYMLDPEGRVMSWNSGAECMTGYQAAEI 441


>gi|255036287|ref|YP_003086908.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949043|gb|ACT93743.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 785

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 112/532 (21%), Positives = 212/532 (39%), Gaps = 52/532 (9%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G+  D+++   V ++L+    I    T A  + D++  +   N + V++           
Sbjct: 136 GVLQDLTQRKLVEEKLSV---IFQYSTDAHLLLDESG-ITDCNEAAVKML---------K 182

Query: 350 PSNDELLEFLRSANKLPE-QLNWKTWKENIFS----VYKSSETHKDTWH-LPNGQTLHVI 403
             N   L  +  A   PE Q + +   E         Y++     +  H   +G+   V 
Sbjct: 183 CKNKSELLSIHPARFSPEFQPDGRRSSEKSIEMDRLAYENGYNRFEWVHKRMDGEEFPVE 242

Query: 404 VTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIK 457
           VT NP     +   + ++ ++T +   E        +  E+      G        G+  
Sbjct: 243 VTLNPVMISSKKVLLVVWHDITHRKRAEELIRRNEAMLAESQQLTHSGSWEADLITGQNY 302

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            S+ AFR       +          +         +S   D    +  +      S    
Sbjct: 303 WSDEAFRIFGLEPGSAGPETELFSKMIHPDDMLLYKSHIRDAINELKPA------SFHLR 356

Query: 518 LELLSDSVLEYSII--PLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKN 570
           + L    V     I  PL ++   +T      +++ +  +AE+ L +  E    A   K+
Sbjct: 357 IVLPDGRVKFIHAIGKPLIDSGGRVTKLYGAIMDIDEQKKAEQELIKAKEQAEMAAVAKS 416

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+E+R+P+  +IGFT LL          +Q +Y+  +  S+  LL L+NDILD 
Sbjct: 417 QFLSTMSHEIRTPMNAVIGFTHLLLQQ---DPKPEQMEYLNILKFSAENLLVLINDILDF 473

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQ 689
           + ++AG ++       +  LL  ++  +  K +E  I +K+ +S+      V D  RL Q
Sbjct: 474 SKIEAGKIEFEEVDFNVLALLENIRSGVLQKANEKGIMLKLKVSNDVNIMVVGDPTRLGQ 533

Query: 690 IFSKILSNAMDFSSKGSTVILKA---ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVS 744
           I + ++SNA+ F+  G  V + A   AR +      F V++ G  IP +  +++F+ F  
Sbjct: 534 ILTNLVSNAVKFTESG-KVTISAAVSARADKHVTIDFRVEDTGIGIPPEKLENIFDSFTQ 592

Query: 745 N--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI--PSKE 792
                  +  G GLGL+I +  + L   ++ + S     +     +  P  E
Sbjct: 593 ATSDTTRKYGGSGLGLTITKRLLELQKSNIHVDSEQGNGSAFYFSLSFPISE 644


>gi|189423636|ref|YP_001950813.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419895|gb|ACD94293.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 947

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 87/388 (22%), Positives = 164/388 (42%), Gaps = 24/388 (6%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLS 475
            ++T   D      T         +  ++ + +     G I   N     L+      L 
Sbjct: 417 RDITTVHDNTLALQTAENAYRTIFNATNDVIFIMDAQQGMIIDCNKQAVQLFGRPRVDLI 476

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               ++      S   +   G++  AA I S  +E   L   L    D    ++ + L  
Sbjct: 477 GSNPVQ-----LSPPDHPDFGFEQAAAHIRSAIEEGAQLFEWLCARPDGSTFWAEVSLRA 531

Query: 536 AQT------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           A+       +    ++++  ++ + L +  +A  +A   KN F+ ++S+E+R+PL  I+G
Sbjct: 532 AEINGRQRLLAVVRDISERKQSMQELQQARDAALQATTAKNEFLANMSHEVRTPLNGIMG 591

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            + LL+T+   SL  +Q+ Y++ + +S+  LL L+NDILD++ ++AG + +  +      
Sbjct: 592 LSQLLRTT---SLTEEQAGYMDMLDSSARNLLVLINDILDISRIEAGSLTIRQTAFSPAK 648

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           LL EV         E  I + ++   +L  + + D  RL Q+   ++ NA+ F+S G  V
Sbjct: 649 LLREVAGMYEKAAAEKGIGLDILPCDELPAALIGDPLRLRQVLINLVGNAIKFTSHGG-V 707

Query: 709 ILKAARDNGDFI-----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
            L+              F V ++G  +  +  + +F+ F        R   G GLGL+I 
Sbjct: 708 TLRVDCLEESATGIRLGFEVSDSGIGMSAETLQKIFHPFTQADASTSRVHGGSGLGLAIC 767

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
                L GG +   SS    +     +P
Sbjct: 768 RRLSELMGGSIRAESSLGQGSRFIVELP 795



 Score = 42.6 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 7/158 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + + E +        G  +++  +G+     D RI   N A+ +L   EE  L  G  I
Sbjct: 169 ERAEREQQLAIQDIHLGIILNNSRDGLLTASADARILAVNRAYCTLLGYEEQELL-GRSI 227

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTM 539
             I A  +    ++    +       F    +   GT        LE SI  +    Q +
Sbjct: 228 HEIEANETMEEVDAHTRKIVEQGFDRFISRHRCKDGT-----TRDLELSISYIAEVGQFL 282

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               +VT+ +  ER L +  +  +   E+ + F    S
Sbjct: 283 TIARDVTERLLLERQLLDSEQRYQAFTELSSDFCHVCS 320


>gi|39729|emb|CAA37124.1| bvgS product, put. sensor protein [Bordetella parapertussis]
          Length = 1238

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 162/387 (41%), Gaps = 12/387 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TE 470
            +++   +  +   E   N  ++     ID     + V   +GR+ L N A+   +  T 
Sbjct: 560 IVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTA 619

Query: 471 ENRLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +  L       N+      +R  +E     + A     F+D   +L G    +    + Y
Sbjct: 620 DAVLGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPY 679

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +  ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  II
Sbjct: 680 GDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAII 739

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L           +QS  ++    S+  LL L+ DILD+A ++AG   L      L 
Sbjct: 740 GMLELALLRPADQEPDRQS--IQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALR 797

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L     +       +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  
Sbjct: 798 ALPEGAIRLFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV 857

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIV 761
           V+   AR +G+     FSV + G  I E   + +F  F       +     G GLGLSI 
Sbjct: 858 VLTVTARPDGEAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSIS 917

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              + L GG + + S+    TT++  +
Sbjct: 918 RRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 94/274 (34%), Gaps = 30/274 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           +  ++ +     + L++ +   +VL D     ++ RD+ G +L  N +Y      T   V
Sbjct: 563 LRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAV 622

Query: 233 FQKAIGESRKLFKEEIKKRM-----ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
             K I E+  +    + + M        +A  +   E      HG  +      V     
Sbjct: 623 LGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPYGDS 682

Query: 287 -----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                G  G  ID+++   +  +L    E       A   F      +        +  +
Sbjct: 683 LGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGML 742

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--- 398
           +LA L             R A++ P++ + +   ++  S+ +      D   +  G+   
Sbjct: 743 ELALL-------------RPADQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDL 789

Query: 399 -TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
             +   + + P G  I +F+ L  Q  +E    T
Sbjct: 790 APVRTALRALPEGA-IRLFDGLARQKGIELVLKT 822


>gi|39354|emb|CAA41252.1| bvgS product, put. sensor protein [Bordetella bronchiseptica]
          Length = 1238

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 162/387 (41%), Gaps = 12/387 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TE 470
            +++   +  +   E   N  ++     ID     + V   +GR+ L N A+   +  T 
Sbjct: 560 IVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTA 619

Query: 471 ENRLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +  L       N+      +R  +E     + A     F+D   +L G    +    + Y
Sbjct: 620 DAVLGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPY 679

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +  ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  II
Sbjct: 680 GDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAII 739

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L           +QS  ++    S+  LL L+ DILD+A ++AG   L      L 
Sbjct: 740 GMLELALLRPADQEPDRQS--IQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALR 797

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L     +       +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  
Sbjct: 798 ALPEGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV 857

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIV 761
           V+   AR +G+     FSV + G  I E   + +F  F       +     G GLGLSI 
Sbjct: 858 VLTVTARPDGEAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSIS 917

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              + L GG + + S+    TT++  +
Sbjct: 918 RRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 94/274 (34%), Gaps = 30/274 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           +  ++ +     + L++ +   +VL D     ++ RD+ G +L  N +Y      T   V
Sbjct: 563 LRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAV 622

Query: 233 FQKAIGESRKLFKEEIKKRM-----ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
             K I E+  +    + + M        +A  +   E      HG  +      V     
Sbjct: 623 LGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPYGDS 682

Query: 287 -----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                G  G  ID+++   +  +L    E       A   F      +        +  +
Sbjct: 683 LGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGML 742

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--- 398
           +LA L             R A++ P++ + +   ++  S+ +      D   +  G+   
Sbjct: 743 ELALL-------------RPADQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDL 789

Query: 399 -TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
             +   + + P G  I +F+ L  Q  +E    T
Sbjct: 790 APVRTALRALPEGA-IRVFDGLARQKGIELVLKT 822


>gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1599

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 124/662 (18%), Positives = 252/662 (38%), Gaps = 66/662 (9%)

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-Y--- 222
            RI  + GI  ++ E     ++L   +++ + + + +  ++  +     I   N + Y   
Sbjct: 651  RIKGVLGIGVDITERKRLEQELKEQVNILEAIINGIPDILAIQYPDHSIERYNKTGYQVL 710

Query: 223  -KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF----------CETVSTL-E 270
             K   E  G    + IG+ R+  +   +  + +    +             C +V  + E
Sbjct: 711  NKTPDEVRGKKCFELIGKERECEECATRTALRTKELAQLEKYIPELDIYLNCRSVPIVDE 770

Query: 271  HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
            HG     KIV  L       +A     E  +         ++ +   AIA  D+     +
Sbjct: 771  HGE--VVKIVEQLRDITSRKLA-----EEALKKSEERYRSLVESQHDAIARIDREGLFTY 823

Query: 331  HNRSFVELWEIDLAFLATNPSNDELLEFLRSANK---LPEQLNWKTWKENIFSVYKSSET 387
             N +   ++      L  +P     + ++   +    L            +   ++    
Sbjct: 824  VNDTCCRIFGKKREELLGSP----FIPYVHEEDMEYLLTNLEKVHQHPHRVQIAHRLVTP 879

Query: 388  HKDTW-HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                W H  N         S        +  ++T     + K   ++K        L+E 
Sbjct: 880  SGFYWMHWENSAIFS---DSGDIVEIQSVGRDITEMKLQQQKLELILKAAQNVSFVLTEP 936

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
                     +       R      EN L  G +   +        +  + ++    I  +
Sbjct: 937  --ANDQQDHLI------RDFSPGAENIL--GYNKEEVLGKSVFMLHSEENFEKVPEIHAA 986

Query: 507  FDDERKSLQGTLELLSDSVLEY----SIIPL---PNAQTMLTFVNVTDSVRAERALTEKN 559
                 +   G + L+  S  +Y    ++ P         +   +++++  +A++ L +  
Sbjct: 987  VA-RNQPWHGRVWLVRKSGEKYPALFTVYPFNLYSRMGMLGVSIDISELEKAQQELIQAK 1045

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E    A+  K++F+ ++S+E+R+PLT I+G  ++L +      +    + ++    S+  
Sbjct: 1046 EQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEMLASEIS---SENGRRIMDMTRESARS 1102

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-G 678
            L  +++DILDL+ V+AG M+L+    VL+ +L+ V+   A +    N+R+    D  +  
Sbjct: 1103 LQRIIDDILDLSKVEAGRMELSSREFVLSAVLDRVQGLYAAQAENKNVRLSKSLDPGVQD 1162

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIP 731
            + + D  RL QI   ++ NA+ F+S G  V L+A   +           F V++ G  IP
Sbjct: 1163 NLLGDASRLEQILRNLVGNAVKFTSHG-QVTLRARPADSQDGSSKQVVRFEVQDTGPGIP 1221

Query: 732  EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            ED    +F  F           +G GLGL+I      L GG++++ S+    +T    IP
Sbjct: 1222 EDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQLTRLMGGNINVESAPGEGSTFVAEIP 1281

Query: 790  SK 791
             +
Sbjct: 1282 FE 1283



 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 136/406 (33%), Gaps = 35/406 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           +  E       L      +++L ++L+  VW  D+ G   + N S     E  G   Q+ 
Sbjct: 289 DTTELKEAEATLKESEEKYRLLVENLNEGVWQIDKDGYTTFVNNS---MAEMLGYSVQEM 345

Query: 237 IGESRKLFKEE----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-------NS 285
           +      F +E    I ++ +               +     + Y ++          N 
Sbjct: 346 LDRHLFDFMDEQAVSIARKNLERCRHGVREQLEFEFIHKDGRRIYTLLASSPIFDQDGNF 405

Query: 286 FGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
            G      D++K      +L          L      I + D+N  +   N+ F ELWE+
Sbjct: 406 TGYLAGVQDITKRKQAEKELMFQNILMKTQLEASPDGIMVVDENDKIISFNQRFAELWEL 465

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
             + +++  S D+ L+ + S    P++   +    +     K+ E+ ++   L +G+   
Sbjct: 466 PDSIMSSQ-SADKALKHVLSKLAYPDEFVRRI---HELCNNKTEESCEEIV-LADGKIFE 520

Query: 402 VIVTSN--PRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
              +    P G   G +W + ++T +   E+       +     D+   G+ V   D + 
Sbjct: 521 RYSSPISGPSGDYYGRVWYYRDITDRKKAESALRENQYLLSTIFDNAPIGIWVMDHDQKP 580

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N  F+       + +S  +                     F   +T  D  +  LQ 
Sbjct: 581 LLVNSYFKENTGLGTDSVSLTSDELAACKKSDDMVLNGHDPCHFEEGVTFKDGRKHMLQT 640

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               L+                +   V++T+  R E+ L E+   L
Sbjct: 641 IKTALAGGDGRI-------KGVLGIGVDITERKRLEQELKEQVNIL 679



 Score = 90.8 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 105/326 (32%), Gaps = 20/326 (6%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ +       L  +  +   +FD+    +W  D     L  N  +K+NT   G+    
Sbjct: 541 RDITDRKKAESALRENQYLLSTIFDNAPIGIWVMDHDQKPLLVNSYFKENT---GLGTDS 597

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------A 289
               S +L   +    M+ +     +F E V T + G     + ++   + G+       
Sbjct: 598 VSLTSDELAACKKSDDMVLNGHDPCHFEEGV-TFKDGRKHMLQTIKTALAGGDGRIKGVL 656

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAI----AIFDQNRYLQFHNRSFVELWEIDLAF 345
           GI +D+++   +  +L     IL  +   I    AI   +  ++ +N++  ++       
Sbjct: 657 GIGVDITERKRLEQELKEQVNILEAIINGIPDILAIQYPDHSIERYNKTGYQVLNKTPDE 716

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +          E +    +  E       +    +  +      D +   N +++ ++  
Sbjct: 717 VRGKKC----FELIGKERECEECATRTALRTKELAQLEKYIPELDIYL--NCRSVPIVDE 770

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                  +    ++T +   E       +     ++   + +A    +G     N     
Sbjct: 771 HGEVVKIVEQLRDITSRKLAEEALKKSEERYRSLVESQHDAIARIDREGLFTYVNDTCCR 830

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYY 491
           ++  +   L     I  +      Y 
Sbjct: 831 IFGKKREELLGSPFIPYVHEEDMEYL 856



 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 79/234 (33%), Gaps = 30/234 (12%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
             ++++IL N  + I        L   N +   ++  D    +     + + +   ++  
Sbjct: 16  FQNSHDILMNAPIGIYTSTPEGRLLSVNPALARMFGYD----SPQDMMESVTDI--ASQL 69

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTIWMFE---- 417
             +  + + +K  + S  +    +K      +G        +     + G +  ++    
Sbjct: 70  YADADDREKFK-RLLSEKEELVNYKCRMRRRDGTIFWTSKNAKAVRDKDGNVGNYQVFVT 128

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-----GRIKLSN-------PAFRS 465
           +++ +   E +     +   +  +     ++++  D      RI            A+  
Sbjct: 129 DISDRKQAEEELKKKERKYRQLFEASP--ISLWEQDFSQVKKRIDSLKAQGIPDLRAYLR 186

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                   L+    + ++     R Y+ S   + F+ I T F +   S++G LE
Sbjct: 187 ENPDLVKELANLVKVVDVNQVTLRRYHASSKEEFFSGITTVFSE--ASIEGFLE 238


>gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 575

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 160/374 (42%), Gaps = 34/374 (9%)

Query: 425 LETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE K +    L K     +D +  G+  F  + RI + N    ++    E  L  G  + 
Sbjct: 224 LEEKISESNILRKRLTSLLDSIDIGIIFFDVNKRILMFNRGAENIL---ETNLKIGFSLL 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTML 540
                C R Y      +LF  +      ER+             LE SI   L   +   
Sbjct: 281 E----CVRVY------ELFEFLFQQDTKERE-------------LEISINNKLKFLKVSK 317

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++  D       +      L+K + +++ FV +VS+EL++PLT+I GF + LK   + 
Sbjct: 318 KKISYEDGKEGILLILSDITFLKKLERVRSDFVANVSHELKTPLTSIKGFVETLKDGAID 377

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +     ++  I      L+ L+ND+L L+ ++   M +    + + +++ E  + +  
Sbjct: 378 DKDVAIK-FLNIIEVEVERLVRLINDLLYLSEIENAAMPILDEKVAVKEVVLESIELLKI 436

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K  + NI+  +     L   +  R  L QIF  ++ NA+ ++ +   V +   + NG  +
Sbjct: 437 KAEKKNIQFDIKVPEGLEMNIY-RDWLKQIFINLIDNAIVYNKENGKVWVTLEKPNGMVV 495

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             VK+ G  IPE   + +F RF        R   G GLGLSIV+  + L+GG + + S +
Sbjct: 496 IKVKDTGIGIPEKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQE 555

Query: 779 EGVTTINCRIPSKE 792
              +     IP K+
Sbjct: 556 GSGSEFTVTIPIKK 569



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 34/180 (18%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL--WEIDLAF-LATNPS 351
           +S+   +  +LT    +L ++ + I  FD N+ +   NR    +    + + F L     
Sbjct: 228 ISESNILRKRLTS---LLDSIDIGIIFFDVNKRILMFNRGAENILETNLKIGFSLLECVR 284

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
             EL EFL       +    +  + +I +  K  +  K      +G+            G
Sbjct: 285 VYELFEFLFQ-----QDTKERELEISINNKLKFLKVSKKKISYEDGK-----------EG 328

Query: 412 TIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            + +  ++T    LE            +  T +      ++ L +G A+   D  IK  N
Sbjct: 329 ILLILSDITFLKKLERVRSDFVANVSHELKTPLTSIKGFVETLKDG-AIDDKDVAIKFLN 387


>gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1055

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 115/652 (17%), Positives = 230/652 (35%), Gaps = 43/652 (6%)

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD--- 214
           R     A    ++ DG+    A  ++    LS     +  +  S+   +           
Sbjct: 266 RADNGQAVFSAVATDGVRRIFAAHSV---ALSEQEQPYLSILVSIPESIAFEAADAVTGL 322

Query: 215 -ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
            + WA  S    T    IV +  I +      E  ++                 TL    
Sbjct: 323 WLGWAGASLLLATALAWIVGRFGIHDPLVRIVETAQRLGGGDLTARSGLTGGRGTLGRLA 382

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
               ++ + L        A  V+    +  +      ++ +    I + D    +   NR
Sbjct: 383 QAMDRMAQNLEED----RAELVAARDALAREALRRQTLMDSSDDGIVVIDSEHRIVEANR 438

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            F E+   +   +    + D   +         ++   ++   N  +V    E+H     
Sbjct: 439 RFAEMLGYEQDAVVGMLTWDYEAD--------WDEAAIRSSFNNPLAVRTVFESHH---R 487

Query: 394 LPNGQTLHVIVTSNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             +G    V V+ N          + +  ++T +  +E       +      ++  + +A
Sbjct: 488 RKDGSVFPVEVSVNGVAIQGEFYFVSVARDITERKAVEQALRDSEERYRALFENSLDAIA 547

Query: 449 VF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           +  G   R++  NPAF  L+       +       + +             L   +    
Sbjct: 548 LIEGAPLRLQWVNPAFCKLFGLSAED-AYALSAEELWSLAHPDDRRLLRPRLEDRLRQGL 606

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRK 564
           D  R+  +          +E +   L        M  + ++T+       L    +    
Sbjct: 607 DLGRECYRIVCGDGRTRWVEMTGRRLGGESASTHMTIYHDITEEQERAALLAAAKDQAEA 666

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K+ F+ ++S+E+R+P+  I+    L+       L  +Q+       A+S  L  L+
Sbjct: 667 ASRAKSEFLANMSHEIRTPINGIVTILQLM---VASGLTEEQADQARMALAASRRLTRLL 723

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           +DILD++ V+AG M +  +   L   + EV++ +        +   V  D  +   V  D
Sbjct: 724 SDILDISRVEAGKMAIVQAPFHLRRAMMEVRELLLPAGDPPGVTCTVSIDDAVPEIVIGD 783

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSV 738
             R  QI + +L NA+ F++ G+  +   A+ +        +FSV ++G  IP+D   S+
Sbjct: 784 VTRFQQILTNLLGNALKFTASGTVSVTAVAQPDASAGHPQVLFSVADSGVGIPKDKLDSL 843

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  F      +R   +G GLGL+I +  + L GG + I S       ++  +
Sbjct: 844 FAPFTQVDQGYRRDYQGAGLGLAICKRLVGLMGGSIGIESEPGQGVVVHFNL 895



 Score = 45.3 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 82/271 (30%), Gaps = 25/271 (9%)

Query: 50  SLAKKVNETYSFLSEICDQLSK----YHSLLTENNCLTIVWDGK----DETPEIIGQLHQ 101
            +A+ + E  + L    D L++      +L+  ++   +V D +    +        L  
Sbjct: 387 RMAQNLEEDRAELVAARDALAREALRRQTLMDSSDDGIVVIDSEHRIVEANRRFAEMLGY 446

Query: 102 RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG 161
             D            +W +       +     +R     F+     ++     +E  V+G
Sbjct: 447 EQDAVVGMLTWDYEADWDEAAIRSSFNNPL-AVR---TVFESHHRRKDGSVFPVEVSVNG 502

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD-SLDFLVWHRDQAGDILWANI 220
             A         +  ++ E     + L +    ++ LF+ SLD +         + W N 
Sbjct: 503 -VAIQGEFYFVSVARDITERKAVEQALRDSEERYRALFENSLDAIALIEGAPLRLQWVNP 561

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-------HGN 273
           ++ K              E          +R++     ++         E        G 
Sbjct: 562 AFCKLFGLSAEDAYALSAEELWSLAHPDDRRLLRPRLEDRLRQGLDLGRECYRIVCGDGR 621

Query: 274 NKSYKIV--RVLNSFGEAGIAI--DVSKEIT 300
            +  ++   R+        + I  D+++E  
Sbjct: 622 TRWVEMTGRRLGGESASTHMTIYHDITEEQE 652


>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
 gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
          Length = 1513

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 98/532 (18%), Positives = 193/532 (36%), Gaps = 54/532 (10%)

Query: 295  VSKEITVNDQLTHTYEILHNLTV-----AIAIF----DQNRYLQFHNRSFVELWEIDLAF 345
              +  T  ++L    E +           + +F    D+   +++ + +   +W      
Sbjct: 570  AREVGTRTEELRRVLETIRRERDLFSGGPVVVFLWGTDETGTVEYVSGNVEAVWGYTPEE 629

Query: 346  LATNPSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHV-- 402
            +           FL      PE  +    +  +     +S           +G+   V  
Sbjct: 630  MTRK-------GFLFMELVHPEDRDRVVREIRDHADQGRSHFEQSYRLRRRDGEYRWVAD 682

Query: 403  -IVTSNPRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
              V      G +        + TV  + E       +          + + +   +GR  
Sbjct: 683  FTVLEKDEAGEVERLRGYLVDQTVLKEAEKALRATGEELDRYFTLSLDLLCIATTEGRFV 742

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              NP +  +       L   + +  +         E+ G       +  F +  +   GT
Sbjct: 743  RLNPEWTRVLGYAMGELEGRSFLDLVHPEDLPATLEALGRLGGQEEVLDFVNRYRCKDGT 802

Query: 518  LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------ 565
                    +E+   P           +++D V  E  L E N  L +             
Sbjct: 803  Y-----RWIEWRSRPF-GTLIYAVARDISDRVETEARLQEANRRLEEQTALARSMALQAD 856

Query: 566  --DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
              +  K+ F+ ++S+E+R+P+  I+G   LL  +    L  +Q  + E + AS+  LL L
Sbjct: 857  QANRAKSDFLANMSHEIRTPMNGILGMAALLLDT---DLTPEQRHFGEIVQASAENLLGL 913

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
            +NDILDL+ ++AG + L      L  L ++V  ++A +     +      +  +  +   
Sbjct: 914  LNDILDLSKIEAGRLALEEVDFDLRSLFDDVGAALAAQAQAKGLEFLGSVEPDVPSALRG 973

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            D  RL Q+ + +L NA+ F+ +G  V+    +  + +     FSV++ G  IP D    +
Sbjct: 974  DPGRLRQVLTNLLGNAVKFTHRGEVVVRARRVSESPERVQVRFSVRDTGIGIPADKVDLL 1033

Query: 739  FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F +F        R   G GLGL+I ++ + L GG + + S +   +     +
Sbjct: 1034 FQKFTQADASTTRHYGGTGLGLAISKNLVELMGGEIGVHSREGVGSEFWFTL 1085


>gi|298251004|ref|ZP_06974808.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297549008|gb|EFH82875.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1352

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 118/697 (16%), Positives = 243/697 (34%), Gaps = 57/697 (8%)

Query: 118  WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
            WL       + +  E+ R          +T                A   +    G  ++
Sbjct: 687  WLHALETGAMYEHEERFRNS--------QTGAYRWFLARAMPVRDGAGQILKWF-GTSTD 737

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
            + +     ++L      ++VL +++  LVW     G + + N  Y               
Sbjct: 738  IEDQKRIEQQLKESEENWRVLAETVPQLVWTIQPDGRLDYCNQRYYDYIGA-SPEQLLGY 796

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCE-----TVSTLEHGNNKSY--KIVRVLNSFGEA- 289
            G S+ L  ++ ++ +     L +          +     GN + +  + + V +  G+  
Sbjct: 797  GWSQFLHPDDAERTLALRRHLLETGEAYEIKYRLREGNTGNYRWFLARAMPVRDETGQIL 856

Query: 290  ---GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
               G + D+  +  +  QL  + E    +   +   + +   +   ++ N+ + +     
Sbjct: 857  KWFGTSTDIEDQKRIEQQLKESEENWRVLAETVPQLVMVARSDGQHEYVNQRWRDYTGFT 916

Query: 343  LAFLATNPSNDELLEFLRS-----ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            +    T       L+F+       A  L +               ++S+T    W L  G
Sbjct: 917  VE--QTQSDLWAYLQFIHPDDREGARALSQHAQETGAMYEHEERLRNSQTGAYRWFLTRG 974

Query: 398  QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
              +                 ++  Q   E       K     ++    G+ V   D ++ 
Sbjct: 975  VPVRDETGQ--IVKWFGTCTDIDEQKRTEEALRQSQKRASVLMNSSIIGIFV-AEDEQVV 1031

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             +N  F  +       L              R          + A      +E  + Q  
Sbjct: 1032 DANDTFLRMTGYTGEDLRE-----------RRMSWRHMTPPEYLARTQQAYEELATQQSI 1080

Query: 518  LELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +    + V  + S +P+     +L             A    N A ++ ++ K+ F+   
Sbjct: 1081 IPYEKEYVCKDGSRLPVLVGAVVLQHHPFQGI-----AFVLDNSARKELEQRKDDFISMA 1135

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+ELR+PL  +   T L++       + + +  +  +      L  L+ ++LD++ + AG
Sbjct: 1136 SHELRNPLAALKMQTQLVRKRLERQSHHEAATALAKVEGPVKRLERLIGELLDVSKIQAG 1195

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    T+ L+ LL+EV  ++      + I   V+      S V D+ RL QIF+ ++S
Sbjct: 1196 RLEYLQETVDLDALLHEVADTMQQIQTTHTI---VVRGAAPRSLVGDKDRLGQIFTNLIS 1252

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
            NA+ +S    TV +  +         V++ G  IP +    +F RF       Q+   G+
Sbjct: 1253 NAIKYSPGAETVEIDMSASPETVTIRVRDYGLGIPREQRDKIFERFYRATGPKQKAIPGL 1312

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G+GL IV   I  HGG +++ S     +     +P +
Sbjct: 1313 GMGLYIVAEIIKRHGGTITVESEVGKGSIFTVTLPKR 1349



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/562 (11%), Positives = 159/562 (28%), Gaps = 52/562 (9%)

Query: 38   IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD-GKDETPEII 96
             +   L +R       K   T + + E          L+        VW    D + E  
Sbjct: 465  FLARALPVRDEAGQILKWFGTCTDIHEKKQIEDDIRVLVDAIPQ--FVWIMHPDGSAEYA 522

Query: 97   G-QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK--------EGQSFDLVAET 147
              +  +   +          + WL+  H     +     +         EG+     + T
Sbjct: 523  NPRWCEYTGMTSQQYQG---DGWLQAIHPDDQQRVLAGWQSAVQAGRPYEGEQRLRNSTT 579

Query: 148  QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
             +       G      A   IL   G  +++ E     +++      ++VL +++  +VW
Sbjct: 580  GDYRWFLARGAPF-KDAQGTILKYFGTSTDIDEQKQAEQRIKASEENWRVLAETVPQMVW 638

Query: 208  HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS------SSALEKN 261
                 G   + N  +           Q            + ++   +       +     
Sbjct: 639  TTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLSFIHPDDREGTRALWLHALETGAMYE 698

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEA------GIAIDVSKEITVNDQLTHTYE----I 311
              E     + G  + +    +    G        G + D+  +  +  QL  + E    +
Sbjct: 699  HEERFRNSQTGAYRWFLARAMPVRDGAGQILKWFGTSTDIEDQKRIEQQLKESEENWRVL 758

Query: 312  LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
               +   +     +  L + N+ + +       ++  +P  ++LL +  S    P+    
Sbjct: 759  AETVPQLVWTIQPDGRLDYCNQRYYD-------YIGASP--EQLLGYGWSQFLHPDDAER 809

Query: 372  K-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWMF---ENLTVQV 423
                + ++    ++ E          G     +  + P     G  +  F    ++  Q 
Sbjct: 810  TLALRRHLLETGEAYEIKYRLREGNTGNYRWFLARAMPVRDETGQILKWFGTSTDIEDQK 869

Query: 424  DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRLSPGTHIR 481
             +E +     +      + + + V V   DG+ +  N  +R        + +     +++
Sbjct: 870  RIEQQLKESEENWRVLAETVPQLVMVARSDGQHEYVNQRWRDYTGFTVEQTQSDLWAYLQ 929

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I                    +   ++  R S  G         +          +   
Sbjct: 930  FIHPDDREGARALSQHAQETGAMYEHEERLRNSQTGAYRWFLTRGVPVRDETGQIVKWFG 989

Query: 541  TFVNVTDSVRAERALTEKNEAL 562
            T  ++ +  R E AL +  +  
Sbjct: 990  TCTDIDEQKRTEEALRQSQKRA 1011



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/536 (11%), Positives = 157/536 (29%), Gaps = 69/536 (12%)

Query: 65  ICDQLSK-YHSLLTENNCLTIVWDGKDE--TPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121
              +  +  H+L+       +VW G+ +        +      +   +      + W++ 
Sbjct: 251 ARKRAERDIHALIDAIPQ--LVWTGRPDGYVDSYNQRWRDYTGLTTEEAQG---DGWMQC 305

Query: 122 HHYIKLSKATE---KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
            H     +  E   +  + G+ ++     ++    +    +  +  +       G   + 
Sbjct: 306 THPEDRQRVLEVWQRAVETGEPYETEQRLRHGTTGEYRWFLMQATPY---TDAQGTILKY 362

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
             T           +  + L D++  LVW     G   + N  +   T        +  G
Sbjct: 363 VGTCTDIHDKKRAEAELRALIDAIPQLVWILGPDGSSEYGNQRWCDYTNM-SFEQYQGDG 421

Query: 239 ESRKLFKEEIKKRM---ISSSALEKNFCE--TVSTLEHGNNKSY--KIVRVLNSFGEA-- 289
             + +  ++ +  +     +    + F     +   + G  + +  + + V +  G+   
Sbjct: 422 WLQAIHPDDYQHTLTLWRHALETGEPFEIEYRLKNGKTGGYRWFLARALPVRDEAGQILK 481

Query: 290 --GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI------ 341
             G   D+ ++  + D +     ++  +   + I   +   ++ N  + E   +      
Sbjct: 482 WFGTCTDIHEKKQIEDDIRV---LVDAIPQFVWIMHPDGSAEYANPRWCEYTGMTSQQYQ 538

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-- 399
              +L     +D             +Q     W+    S  ++   ++    L N  T  
Sbjct: 539 GDGWLQAIHPDD-------------QQRVLAGWQ----SAVQAGRPYEGEQRLRNSTTGD 581

Query: 400 -LHVIVTSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
               +    P    +G  +  F    ++  Q   E +     +      + + + V    
Sbjct: 582 YRWFLARGAPFKDAQGTILKYFGTSTDIDEQKQAEQRIKASEENWRVLAETVPQMVWTTR 641

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           P+G+ +  N  +          +          +       E        A+ T    E 
Sbjct: 642 PNGQHEYVNQRWCDYMGVTVEHMQSDR--WAPLSFIHPDDREGTRALWLHALETGAMYEH 699

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
           +      +  +        +P+ +      +   T  ++ D  R E+ L E  E  
Sbjct: 700 EERFRNSQTGAYRWFLARAMPVRDGAGQILKWFGTSTDIEDQKRIEQQLKESEENW 755



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/409 (11%), Positives = 115/409 (28%), Gaps = 49/409 (11%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--EGIVFQKAIG 238
           T    +           +  +L   ++  + A  I + N S +  T +  E ++      
Sbjct: 4   TKRTERLTPASSETLLHMLKTLPDALFLVNDAETIKYVNTSAQTMTGSSREALLGNSFWH 63

Query: 239 ESRKLFKEEIKKRMISSSALEKN-------------FCETVSTLEHGNNKSYKIVRVLNS 285
            + +L    + + M  +   ++                  ++    G    +  +R    
Sbjct: 64  GAPQLLSPSLYQAMRKTRQTQEPTEVEYWSPMTRNWLRAQLTPTVEGLTLQFHQMRAPTP 123

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
                      ++ T         + L  L   I I      +   N   ++  ++    
Sbjct: 124 ---------TPRQETFPQGERLCIDDLDGLHTRIGILTPEGIVLDINAVPLDDAQVRREE 174

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +   P  +        A++   +             +++    ++   L    +   ++T
Sbjct: 175 VIGKPLAETPWWSFAPASQEQLRAAIARANAGETVCFEALVRPREGMLL----SFESVIT 230

Query: 406 SNPR-----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +          +    ++T +   E   + L       ID + + V    PDG +   N
Sbjct: 231 PHLNADHHIEYLVIAGIDITARKRAERDIHAL-------IDAIPQLVWTGRPDGYVDSYN 283

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             +R               ++       +   E   W         ++ E++   GT   
Sbjct: 284 QRWRDYTGLTTEEAQGDGWMQCTHPEDRQRVLE--VWQRAVETGEPYETEQRLRHGT--T 339

Query: 521 LSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRK 564
                      P  +AQ      + T  ++ D  RAE  L    +A+ +
Sbjct: 340 GEYRWFLMQATPYTDAQGTILKYVGTCTDIHDKKRAEAELRALIDAIPQ 388


>gi|296132739|ref|YP_003639986.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296031317|gb|ADG82085.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 598

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 163/400 (40%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTI-----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            V V S+   G +     +M + L+  +D   +  + ++     I  L EGV      G 
Sbjct: 226 RVKVQSSDEVGELAASFNYMGDKLSETIDALHQEKSKIE---SLIMSLGEGVIATDRTGT 282

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           +   N   R L +  E+ +      RNI   CS            A II    +E     
Sbjct: 283 VVRVNTMARKLMQFAEDPIG-----RNIKECCSGG---------VAEIIQKVLEEGIGKS 328

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
            TL+  + +VL  +  P+ +++  ++         +E           K ++++  FV  
Sbjct: 329 ATLKKENITVLALA-SPIKDSRENISGTVCVLQDISEAE---------KLEQMRKDFVSD 378

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PLT I G+ + L    +     +Q  Y   I   +  L  L++D+LDL+ + +
Sbjct: 379 VSHELRTPLTAIRGYNEALSDGTVEDPEIRQK-YHNIIREETQRLERLIHDLLDLSRLQS 437

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G + L    + +  ++    + +  +++   I +++     +   + +  RL+Q+   +L
Sbjct: 438 GKISLELEPLDVGAVIRSTVEKLEPQINIKGIAVELDIPQNIPYIMGNEDRLVQLLIILL 497

Query: 696 SNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
            NA+ ++  G  + +            ++ + G  IP++    ++ RF        R   
Sbjct: 498 DNAVRYTDAGGKIFVSVGDVGLKGVEIAITDTGKGIPKEDIPFIWERFYKVDKSRTRTGA 557

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G GLGL+I    + LH G + + S     TT     P  E
Sbjct: 558 GTGLGLAIARQIVELHHGTIEVESELGRGTTFKIVFPLAE 597


>gi|291279597|ref|YP_003496432.1| hypothetical protein DEFDS_1208 [Deferribacter desulfuricans SSM1]
 gi|290754299|dbj|BAI80676.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 816

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 150/288 (52%), Gaps = 5/288 (1%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           I  F+D RK L   L+  +  +LE     L  AQ+        +    +  L E ++ L 
Sbjct: 225 IKLFEDSRK-LTKELDEKN-RILEAQNREL-QAQSEELEAQTEELKVQKIELEEYSKRLN 281

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           K  + KN F+ ++S+ELR+PL +I+G T+L+  +    L+++  + ++ I+ S   LLN+
Sbjct: 282 KLQQYKNEFIANMSHELRTPLNSIVGLTELILKN--NQLDNELKEKLKIINLSGKQLLNI 339

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDILDL+ +++G + L    I L + ++ V   I  + +E NI  KVI   K      D
Sbjct: 340 INDILDLSKIESGKIDLEIEEIDLTETIDYVSNIIKPQCNEKNISFKVIFKAKNYLINTD 399

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           + +L QI   +LSN++ ++ +   + L    D    I  VK+ G  IPED+ +++F  FV
Sbjct: 400 KYKLTQILLNLLSNSVKYTEENGLIELIIEEDTKYIIIHVKDTGIGIPEDLMQNLFEPFV 459

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +   +   +G GLGL + +  +NL GG +++ S     T     IP +
Sbjct: 460 TMGRKFNVQGTGLGLPLTKKLVNLLGGKIAVKSKVGEGTIFTVYIPKE 507


>gi|108761502|ref|YP_631002.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108465382|gb|ABF90567.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 1077

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 120/586 (20%), Positives = 223/586 (38%), Gaps = 32/586 (5%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
            + T T+ +     +G S +L  ++  ++     A E      V   +    ++Y   + 
Sbjct: 345 LRRTRTDSLRGVVVLGISPRLRFDDTYRQFFEDLARELATHLAVEQEKRAEREAYTHAKQ 404

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
             +  EA +A     E  +          L    + +      R +   +   ++   + 
Sbjct: 405 ARAQAEAEVARRAQAEAALRASEERLRMALAAGQLGVVELQYERGVLSWDERALQHLGLP 464

Query: 343 LAFLATNPSNDELLEFLRS-----ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
                 +P+  E    +       A +  EQ      +                + L   
Sbjct: 465 P---GKSPTLKEAAARIHPDDVNRARRTIEQALRPGAEAIRLECRVQGWDGVQRFLLAMV 521

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           +T H      P    +   +++T Q   E +   L       ++   + + V  P GR  
Sbjct: 522 KT-HFDAQGQPD-RVVGALQDVTEQRSAERERERL----ATIVEQSPDFIGVGDPSGRAV 575

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N A R L     +      H+R+      + Y +                 R     T
Sbjct: 576 WVNDAGRRLLGLGLDEDITRYHLRDFFLAEDQTYVDEHIAAAILQGGRREGAFRFRHFPT 635

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL-----------RKAD 566
            E ++     ++++   + Q  +    V   +RA++ L  + E L            +A+
Sbjct: 636 GEPIAAQYHTFALVE-HDTQRQMGIATVGRDIRAQKRLEAERERLLARERVAREEAEEAN 694

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K+ F+  VS+ELR+PLT ++G+  +L+T  L     K+ + +  +  ++     LV D
Sbjct: 695 RLKDEFLATVSHELRTPLTAVLGWVQMLRTGTLPP--EKRERALATVERNARAQGQLVED 752

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ +  G +KL+ S++ ++ ++  V +S+        IRI+   D   G+ + D  R
Sbjct: 753 LLDVSRIMTGKLKLDVSSVDVSQVVEAVLESLRPAAEAKGIRIQAALDSG-GTIMGDVSR 811

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   +LSNA+ F+ KG  V +   R N     +V + G  I       VF RF    
Sbjct: 812 LQQVVWNLLSNAVKFTPKGGRVQVLVERRNSSVEITVADTGQGISPQFLPHVFERFRQAD 871

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
               R   G+GLGL+IV   + LHGG V  +S  EG   T    +P
Sbjct: 872 GSTTRKAGGLGLGLAIVRHLVELHGGTVMATSEGEGRGATFIVSLP 917



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/296 (9%), Positives = 66/296 (22%), Gaps = 55/296 (18%)

Query: 47  QRNSLAKKVNETYSFLSEICDQLSKYHSLLTEN---------NCLTIVWDGKDETPEIIG 97
            R     +V       + +     +    L                + WD +    + +G
Sbjct: 405 ARAQAEAEVARRAQAEAALRASEERLRMALAAGQLGVVELQYERGVLSWDERAL--QHLG 462

Query: 98  QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE-KLRKEGQSFDLVAETQN------- 149
               +    +           +      +  +  E  LR   ++  L    Q        
Sbjct: 463 LPPGKSPTLKEAA------ARIHPDDVNRARRTIEQALRPGAEAIRLECRVQGWDGVQRF 516

Query: 150 -----DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
                      +G+         +  +    S                     + +    
Sbjct: 517 LLAMVKTHFDAQGQP--DRVVGALQDVTEQRS-----------AERERERLATIVEQSPD 563

Query: 205 LVWHRDQAGDILWANISYKKNTE---TEGIVFQKAIG----ESRKLFKEEIKKRMISSSA 257
            +   D +G  +W N + ++       E I           E +    E I   ++    
Sbjct: 564 FIGVGDPSGRAVWVNDAGRRLLGLGLDEDITRYHLRDFFLAEDQTYVDEHIAAAILQGGR 623

Query: 258 LEKNFCET---VSTLEHGNNKSYKIV--RVLNSFGEAGIAIDVSKEITVNDQLTHT 308
            E  F                ++ +V        G A +  D+  +  +  +    
Sbjct: 624 REGAFRFRHFPTGEPIAAQYHTFALVEHDTQRQMGIATVGRDIRAQKRLEAERERL 679


>gi|300866839|ref|ZP_07111516.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335149|emb|CBN56676.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1317

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 148/845 (17%), Positives = 299/845 (35%), Gaps = 108/845 (12%)

Query: 23   KIAVFGTIAGMLLTTIIPIIL------LIRQRNSLAKKVNETYSFLS-EICDQLSKYHSL 75
            K+ +FG ++G+ +  +   +         R R    +   E       E   + S+    
Sbjct: 259  KVILFGGLSGVWILALTVYLAQKSEHHARRARTINQQLEKEIVERQQIEANLRESEERWQ 318

Query: 76   LTENNCLTIVWDGKDET---------PEIIGQL-HQRIDIPQTDTDLLSFENWLKFHHYI 125
            L        +WD   +T          EI+G L  +    PQ   +L      L      
Sbjct: 319  LALRGNSDGIWDWNMQTNEIFYSTRCKEILGYLDSEHSKYPQDRINL------LHPEDRE 372

Query: 126  KLSKATEKLRKEGQSFDLV---AETQNDCA--IKIEGRVSGSCAFLRILSLDGIYSELAE 180
            K+ +A +    +   F +       +N     I   G+     A   I  + G ++++ E
Sbjct: 373  KVVQAVQDHLTKKTPFYISEHRIRCKNGDYKWILDRGQALWDDAGKAIR-MSGSHTDITE 431

Query: 181  TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                  +L       +     +  L    D++G  L  N SY      E       + + 
Sbjct: 432  RKQAEAELQELTISLENAISGISKL----DKSGRYLSVNRSYANAAGYEPEEMLGMMWQQ 487

Query: 241  RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GEAGIA 292
                 +  K         + +  E  +     +   +    V+ S         G     
Sbjct: 488  TVHPDDVDKLIAAYDQMQQNDKVEVEARGIRKDGSIFYKQLVMISIYDEQHQFIGHHCFM 547

Query: 293  IDVS-----------KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
             DVS            E  +    T     +++   A  I D N  + + ++S+++ +++
Sbjct: 548  KDVSDAYGELRLRKYAEEALQQSETRFQLFMNHSPAAAWISDTNGVILYASQSYLKNFKL 607

Query: 342  DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                +      +        A+K+ + ++     + +    + +          +G    
Sbjct: 608  PTLDIIGKSIFEIFSSEF--AHKILDNIHKVVQTQQVLEAIELAP-------RADGTVGQ 658

Query: 402  VIVTSNPR---------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
             +V   P          GG      ++T +   E   + L       ++   + +     
Sbjct: 659  FLVYKFPLPETSRQILVGGVAI---DITERQQTEAAISQL----AAIVESSEDAIIGKSL 711

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            DG I+  N     ++      +   +  + I         +          I  ++  R+
Sbjct: 712  DGVIESWNAGAERMFGYTALEIVGQSITKLIPPNYVDEEAQILTIIRQEKSIPHYETVRQ 771

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
               GTL  +S S+                  +++D  R E  L +  EA   A+  K++F
Sbjct: 772  RKDGTLVNVSVSISLIKNKKGAIIGASKIVRDISDRKRREIELWQAMEAAESANLAKSTF 831

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            + ++S+ELR+PL  I+GFT ++  +   +L  +  + ++ I  S   LL+L+NDILDL+ 
Sbjct: 832  LANMSHELRTPLNAILGFTQVMARNP--ALTPELKEDLQTIGRSGDYLLSLINDILDLSK 889

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
            ++AG   L  +   L  LL+ ++  +A +++   +++       L  F+ AD Q+L Q+ 
Sbjct: 890  IEAGHSTLEETGFDLIALLHSLQNMLAERVNSKKLQLYFDVAPNLPQFILADSQKLRQVL 949

Query: 692  SKILSNAMDFSSKGSTVILKAARDNG--------------------------DFIFSVKN 725
              +LSN++ F+  G  + L+   +                              +F V +
Sbjct: 950  LNLLSNSLKFTDLG-YITLRVRSEESSLTVRGLEAPEISNLDPTISNVTPKTSLLFEVTD 1008

Query: 726  NGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             G  I      ++F+ FV   A +  + G GLGL+I    I + GG + ++S+    +T 
Sbjct: 1009 TGVGISPQELDNIFDAFVQTQAGKRAKNGTGLGLTISRKLIEIMGGEIFVNSTPGQGSTF 1068

Query: 785  NCRIP 789
               +P
Sbjct: 1069 TFTVP 1073


>gi|144273|gb|AAA23052.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
          Length = 842

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 109/613 (17%), Positives = 233/613 (38%), Gaps = 50/613 (8%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           ++  + E  G       G++      ++  R ++  AL         ++ + + +  +  
Sbjct: 225 AFALSIEDLGDGPAAVRGQAADGALLDVAVRPVAQGALLAVAAAPTRSVANLDRQVMEGA 284

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----------LTVAIAIFDQNRYLQF 330
             L      GIA+ +   I          E + +              I  +D N    +
Sbjct: 285 FSLLVPLGVGIALALLLMIQSRKAEVAHREFIDSERRFRLAVEAARCGIWEWDLNGDQVY 344

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFL------RSANKLPEQLNWKTWKENIFSVYKS 384
            +     ++           S  +LLE +      R    L     +  + +  F V  S
Sbjct: 345 LSDVTGAMF---GWGGGGVVSGQDLLERISIDHRERVRQALANAAMYGAF-DVSFRVPAS 400

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            +  +  W    GQ           G    I +  ++T +   + +         + I+ 
Sbjct: 401 EQGARSLWIDARGQGF---GKPGSEGHARIIGVALDVTEERIAQARAQAAENRLRDAIES 457

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNESDGWDLFA 501
           +SE   ++   GR+ + N  +RS++  E   L PG     +    +     +    D   
Sbjct: 458 VSEAFVLWDRQGRLLMCNRNYRSVFSLEPKILKPGAARAEVNRFAALAIKQDHPAPDGAK 517

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR------AERAL 555
            +  +   + + +Q +    ++  L  +   +   +T        +          ER+ 
Sbjct: 518 GVREAEMMDGRWIQISERRTAEGGLVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQ 577

Query: 556 TEKNEALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NS 604
            +  E  RK           ++ K+ F+ ++S+ELR+PL  I GF++++     G L + 
Sbjct: 578 EQLAELARKYETEKVKAESANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQ 637

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +   Y + I +S   LL L+NDILD++ ++AG M L + ++ L D+  +  + +  +   
Sbjct: 638 RYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEA 697

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFI 720
             +++ +    +L    AD + + Q+   +LSNA+ F+ +  +V ++             
Sbjct: 698 AGLKLDIDF-PQLPEIEADYRAVKQVLLNLLSNAIKFTPRAGSVTVRVEVRRDPFGDLIK 756

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  I ++    +   F           +G GLGL++ +S I +H G + + S+ 
Sbjct: 757 VSVTDTGIGIAKEDLARLAKPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTP 816

Query: 779 EGVTTINCRIPSK 791
              TT++  +P +
Sbjct: 817 GEGTTVSFTLPVR 829



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 92/305 (30%), Gaps = 26/305 (8%)

Query: 26  VFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV 85
            F  +  + +   + ++L+I+ R +         S          ++   +    C    
Sbjct: 284 AFSLLVPLGVGIALALLLMIQSRKAEVAHREFIDSE--------RRFRLAVEAARCGIWE 335

Query: 86  WDGKDE---TPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ--- 139
           WD   +     ++ G                     +   H  ++ +A       G    
Sbjct: 336 WDLNGDQVYLSDVTG--AMFGWGGGGVVSGQDLLERISIDHRERVRQALANAAMYGAFDV 393

Query: 140 SFDLVAETQNDCA--IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
           SF + A  Q   +  I   G+  G         + G+  ++ E  +   +     +  + 
Sbjct: 394 SFRVPASEQGARSLWIDARGQGFGKPGSEGHARIIGVALDVTEERIAQARAQAAENRLRD 453

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKK--NTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
             +S+       D+ G +L  N +Y+   + E + +    A  E  +     IK+   + 
Sbjct: 454 AIESVSEAFVLWDRQGRLLMCNRNYRSVFSLEPKILKPGAARAEVNRFAALAIKQDHPAP 513

Query: 256 SALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
              +      +      + +  +I  R     G    A D++   T  +      E L N
Sbjct: 514 DGAKGVREAEMM-----DGRWIQISERRTAEGGLVMTAADITAIKTQEEARRRNEEQLQN 568

Query: 315 LTVAI 319
               +
Sbjct: 569 AVAGL 573


>gi|16126721|ref|NP_421285.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
 gi|221235503|ref|YP_002517940.1| sensory transduction histidine kinase pleC [Caulobacter crescentus
           NA1000]
 gi|13638405|sp|P37894|PLEC_CAUCR RecName: Full=Non-motile and phage-resistance protein
 gi|13424035|gb|AAK24453.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
 gi|220964676|gb|ACL96032.1| sensory transduction histidine kinase pleC [Caulobacter crescentus
           NA1000]
          Length = 842

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 110/613 (17%), Positives = 234/613 (38%), Gaps = 50/613 (8%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           ++  + E  G       G++      ++  R ++  AL         ++ + + +  +  
Sbjct: 225 AFALSIEDLGDGPAAVRGQAADGALLDVAVRPVAQGALLAVAAAPTRSVANLDRQVMEGA 284

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----------LTVAIAIFDQNRYLQF 330
             L      GIA+ +   I          E + +              I  +D N    +
Sbjct: 285 FSLLVPLGVGIALALLLMIQSRKAEVAHREFIDSERRFRLAVEAARCGIWEWDLNGDQVY 344

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFL------RSANKLPEQLNWKTWKENIFSVYKS 384
            +     ++           S  +LLE +      R    L     +  + +  F V  S
Sbjct: 345 LSDVTGAMF---GWGGGGVVSGQDLLERISIDHRERVRQALANAAMYGAF-DVSFRVPAS 400

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            +  +  W    GQ           G    I +  ++T +   + +         + I+ 
Sbjct: 401 EQGARSLWIDARGQGF---GKPGSEGHARIIGVALDVTEERIAQARAQAAENRLRDAIES 457

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNESDGWDLFA 501
           +SE   ++   GR+ + N  +RS++  E   L PG     +    +     +    D   
Sbjct: 458 VSEAFVLWDRQGRLLMCNRNYRSVFSLEPKILKPGAARAEVNRFAALAIKQDHPAPDGAK 517

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR------AERAL 555
            +  +   + + +Q +    ++  L  +   +   +T        +          ER+ 
Sbjct: 518 GVREAEMMDGRWIQISERRTAEGGLVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQ 577

Query: 556 TEKNEALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NS 604
            +  E  RK           ++ K+ F+ ++S+ELR+PL  I GF++++     G L + 
Sbjct: 578 EQLAELARKYETEKVKAESANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQ 637

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +   Y + I +S   LL L+NDILD++ ++AG M L + ++ L D+  +  + +  +   
Sbjct: 638 RYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEA 697

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFI 720
             +++ +    +L    AD + + Q+   +LSNA+ F+ +  +V ++A            
Sbjct: 698 AGLKLDIDF-PQLPEIEADYRAVKQVLLNLLSNAIKFTPRAGSVTVRAEVRRDPFGDLIK 756

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  I ++    +   F           +G GLGL++ +S I +H G + + S+ 
Sbjct: 757 VSVTDTGIGIAKEDLARLAKPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTP 816

Query: 779 EGVTTINCRIPSK 791
              TT++  +P +
Sbjct: 817 GEGTTVSFTLPVR 829



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 97/306 (31%), Gaps = 28/306 (9%)

Query: 26  VFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV 85
            F  +  + +   + ++L+I+ R +         S          ++   +    C    
Sbjct: 284 AFSLLVPLGVGIALALLLMIQSRKAEVAHREFIDSE--------RRFRLAVEAARCGIWE 335

Query: 86  WDGKDE---TPEIIGQL-HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ-- 139
           WD   +     ++ G +         +  DLL     +   H  ++ +A       G   
Sbjct: 336 WDLNGDQVYLSDVTGAMFGWGGGGVVSGQDLL---ERISIDHRERVRQALANAAMYGAFD 392

Query: 140 -SFDLVAETQNDCA--IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
            SF + A  Q   +  I   G+  G         + G+  ++ E  +   +     +  +
Sbjct: 393 VSFRVPASEQGARSLWIDARGQGFGKPGSEGHARIIGVALDVTEERIAQARAQAAENRLR 452

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKK--NTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
              +S+       D+ G +L  N +Y+   + E + +    A  E  +     IK+   +
Sbjct: 453 DAIESVSEAFVLWDRQGRLLMCNRNYRSVFSLEPKILKPGAARAEVNRFAALAIKQDHPA 512

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
               +      +      + +  +I  R     G    A D++   T  +      E L 
Sbjct: 513 PDGAKGVREAEMM-----DGRWIQISERRTAEGGLVMTAADITAIKTQEEARRRNEEQLQ 567

Query: 314 NLTVAI 319
           N    +
Sbjct: 568 NAVAGL 573


>gi|298247304|ref|ZP_06971109.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297549963|gb|EFH83829.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1110

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 120/769 (15%), Positives = 268/769 (34%), Gaps = 62/769 (8%)

Query: 56   NETYSFLSEICDQLSKYHSLLTENNCLTIVWD-GKDETPEIIGQ-LHQRIDIPQTDTDLL 113
            +E      ++      +  L        +VW    D   E   Q  +             
Sbjct: 368  DEQKRAQQQLKTSEENWRGLAETVPQ--LVWTTSPDGRVEYWNQRWYTYTGSSLEHALGH 425

Query: 114  SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC-------AIKIEGRVSGSCAFL 166
             +  +L    Y           + G+ +++    +           ++       +   +
Sbjct: 426  EWSQFLPPDEYQHTLTVWHHALETGEPYEIEYRLKEGQTGGYRWFLVRAMPVRDDTRQIV 485

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            +     G  +++ +     ++L       +VL +++  LVW     G     N  +    
Sbjct: 486  KWF---GTCTDIDDRKQAEQQLKESREHLRVLAETVPQLVWSTGPDGLTEDWNQRFADYF 542

Query: 227  ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE----TVSTLEHGNNKSY--KIV 280
            +      +          +E    R +   +LE          +   + G  + +  + +
Sbjct: 543  QATPEQLRGYGWRQFLHPEEYDHVRAVRDRSLETGEPYEIEYRLREGKTGLYRWFLARAL 602

Query: 281  RVLNSFGEA----GIAIDVSKEITVNDQLT---HTYEIL-HNLTVAIAIFDQNRYLQFHN 332
             V +  G+     G A D+ ++  V  QL      + +L   +   +     +   ++ N
Sbjct: 603  PVRDEAGQILKWFGTATDIDEQKQVEQQLKISEQNWRVLAETVPQLVWTVRPDGQHEYTN 662

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            + + +     L  + ++      L+F+   ++     + +   ++        +  +   
Sbjct: 663  QRWHDYTGSTLEHMQSDQWAH--LQFIHPDDR----EDTRALWQHALDTGAMYDHEERLR 716

Query: 393  HLPNGQTLHVIVTSNP---RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                G     +V   P     G I        ++  Q  +E       +     ID    
Sbjct: 717  ESQTGLYRWFLVRGMPVRDDTGQIVKWFGTCTDIEDQKCIEEALRQSQERIRALIDSNII 776

Query: 446  GVA-VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            G+  V G +  +  +N A+  +    +  +      R ++A  +    ++  +      I
Sbjct: 777  GIVSVEGEENVLVEANEAYLHMTGYTQEDVRS----RTLSAESTTPPEQAPLFQRALQEI 832

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            T+   +   L+  L     S L     P+     +       +  R   +    N A ++
Sbjct: 833  TA-RGQHTPLETELVCKDGSRL-----PVLVGGVIF-----QERPRLMVSFVLDNSARKE 881

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
             ++ K++F+   S+ELR+PL  +   T L++         + +  +  +      L  L+
Sbjct: 882  LEQRKDAFISMASHELRNPLAALKMQTQLVQKRLERQSLHEAATALSRVEGPVKQLERLI 941

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
             ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+        V D+
Sbjct: 942  GELLDVSKIQAGRLEYRQETVDLDALLHEVADTMQQLSTTHTI---VVRGAAPHLLVGDK 998

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
             RL Q+F+ ++SNA+ +S     V +  +        SV ++G  IP +    +F RF  
Sbjct: 999  DRLGQVFTNLISNAIKYSPDTEAVEIDLSASEETVTISVHDHGLGIPREQRDKIFERFYR 1058

Query: 745  NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 QR   G+G+GL IV   +  H G +++ S+    +T    +P K
Sbjct: 1059 ATGPRQRAIPGLGMGLYIVAEIVKRHEGTITVDSTVGKGSTFTVTLPCK 1107



 Score = 87.7 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 69/542 (12%), Positives = 161/542 (29%), Gaps = 67/542 (12%)

Query: 65  ICDQLSK-YHSLLTENNCLTIVWDGKDE--TPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121
              +  +  H+L+       +VW G+ +        +      +            W++ 
Sbjct: 249 ARKRAEREIHALIDAIPQ--LVWTGRPDGYVDSYNQRWRDYTGLSTEQAQG---NGWMQC 303

Query: 122 HHYIKLSKATEKLRK---EGQSFD----LVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
            H     +  E  +     G+ ++    L   T  +    +   V    A   IL   G 
Sbjct: 304 THPADRQRVLEVWQNAVQTGRPYETEQRLRQHTTGEYRWFLMQAVPFKDAQGTILKYIGT 363

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            +++ E     ++L      ++ L +++  LVW     G + + N  +       G   +
Sbjct: 364 CTDIDEQKRAQQQLKTSEENWRGLAETVPQLVWTTSPDGRVEYWNQRW---YTYTGSSLE 420

Query: 235 KAIGESRKLFKEEIKKRMISS-------SALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
            A+G     F    + +   +       +         +   + G  + + +  +     
Sbjct: 421 HALGHEWSQFLPPDEYQHTLTVWHHALETGEPYEIEYRLKEGQTGGYRWFLVRAMPVRDD 480

Query: 288 ------EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVE 337
                   G   D+        QL  + E L  L   +         +   +  N+ F +
Sbjct: 481 TRQIVKWFGTCTDIDDRKQAEQQLKESREHLRVLAETVPQLVWSTGPDGLTEDWNQRFAD 540

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            ++     L          +FL      PE+  +   +       ++ E ++  + L  G
Sbjct: 541 YFQATPEQLRG----YGWRQFLH-----PEE--YDHVRAVRDRSLETGEPYEIEYRLREG 589

Query: 398 QT---LHVIVTSNP---RGGTIW----MFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +T      +  + P     G I        ++  Q  +E +     +      + + + V
Sbjct: 590 KTGLYRWFLARALPVRDEAGQILKWFGTATDIDEQKQVEQQLKISEQNWRVLAETVPQLV 649

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLS--PGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
               PDG+ + +N  +     +    +      H++ I               L    + 
Sbjct: 650 WTVRPDGQHEYTNQRWHDYTGSTLEHMQSDQWAHLQFIHPDDREDTRALWQHALDTGAMY 709

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNE 560
             ++  +  Q  L            +P+ +      +   T  ++ D    E AL +  E
Sbjct: 710 DHEERLRESQTGLY----RWFLVRGMPVRDDTGQIVKWFGTCTDIEDQKCIEEALRQSQE 765

Query: 561 AL 562
            +
Sbjct: 766 RI 767



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 107/348 (30%), Gaps = 28/348 (8%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
            E   +  + G   +L     +     ++  E   C     +    +     +   +   
Sbjct: 179 AEAPWWSSSPGSQEQLRAAIARASTGETAHFEAQLCPREGIVLSSESVITPHLDADHQVE 238

Query: 288 EAGIA-IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
              IA ID++       ++     ++  +   +     + Y+  +N+ + +   +     
Sbjct: 239 YLVIAGIDITARKRAEREIHA---LIDAIPQLVWTGRPDGYVDSYNQRWRDYTGLSTEQA 295

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
             N        +++  +    Q   + W +N     +  ET +       G+    ++ +
Sbjct: 296 QGN-------GWMQCTHPADRQRVLEVW-QNAVQTGRPYETEQRLRQHTTGEYRWFLMQA 347

Query: 407 NP----RGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            P    +G     I    ++  Q   + +  T  +      + + + V    PDGR++  
Sbjct: 348 VPFKDAQGTILKYIGTCTDIDEQKRAQQQLKTSEENWRGLAETVPQLVWTTSPDGRVEYW 407

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N  + +   +     + G             +  +       A+ T    E +      +
Sbjct: 408 NQRWYTYTGSSLEH-ALGHEWSQFLPPDEYQHTLTVWHH---ALETGEPYEIEYRLKEGQ 463

Query: 520 LLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
                      +P+ +      +   T  ++ D  +AE+ L E  E L
Sbjct: 464 TGGYRWFLVRAMPVRDDTRQIVKWFGTCTDIDDRKQAEQQLKESREHL 511



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 58/427 (13%), Positives = 124/427 (29%), Gaps = 47/427 (11%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-GIVFQKA 236
           ++      +           + ++L    +  D A  I++AN S +         +    
Sbjct: 1   MSNAKQSKRLTLASSGTLLTMLETLPGAFFFIDDAATIVYANASAQAMLGAPLEALRGNN 60

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCET--VSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
                         + +  +   +   E   VS +         +       G      +
Sbjct: 61  FWRCAPYLVSTTLYQAVRKTKQARALTEVEYVSPVTQA---LLHVHLAPTVGGLTLQFHE 117

Query: 295 VSKEITVNDQLTHTYEI----LHNLTVAIAIFDQNRYLQFHN-----RSFVELWEI---- 341
           V + I   +       +    L  L   I I      +   N      + V   E+    
Sbjct: 118 VREPIWRQEIFPQGERLCIDDLDGLHTRIGILTPEGIVLDINAVPLDDAQVRREEVIGKP 177

Query: 342 --DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
             +  + +++P + E L    +     E  +++        +  SSE+        + Q 
Sbjct: 178 LAEAPWWSSSPGSQEQLRAAIARASTGETAHFEAQLCPREGIVLSSESVITPHLDADHQV 237

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            ++++             ++T +   E + + L       ID + + V    PDG +   
Sbjct: 238 EYLVIAGI----------DITARKRAEREIHAL-------IDAIPQLVWTGRPDGYVDSY 280

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N  +R        + + G           R     + W         ++ E++  Q T  
Sbjct: 281 NQRWRDYTGLSTEQ-AQGNGWMQCTHPADRQ-RVLEVWQNAVQTGRPYETEQRLRQHT-- 336

Query: 520 LLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                      +P  +AQ      + T  ++ +  RA++ L    E  R   E     V 
Sbjct: 337 TGEYRWFLMQAVPFKDAQGTILKYIGTCTDIDEQKRAQQQLKTSEENWRGLAETVPQLVW 396

Query: 575 HVSYELR 581
             S + R
Sbjct: 397 TTSPDGR 403


>gi|217076268|ref|YP_002333984.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
 gi|217036121|gb|ACJ74643.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
          Length = 424

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 167/390 (42%), Gaps = 40/390 (10%)

Query: 413 IWMFENLTVQV-DLETK---YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +++ E +  ++  LE +       +K     ++++ + + +   DG I  +N   R + +
Sbjct: 51  LYIAEKIRKKITKLEEENYDLELSLKNHLTILNNIVDPIIITKKDGTITFANNEARKITR 110

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---V 525
                  PG   R +      YY      +          + +    G + +  +     
Sbjct: 111 -------PGIEERKVYEVFEDYYVNQMFDETI--------NNKSLTSGEINIFVNGEKKY 155

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E  I+P+   Q    F+ V   V  ER L          + ++  F+ +VS+ELR+PLT
Sbjct: 156 YEVKIVPVTLEQNNERFIIVLHDVTQERVL----------ENVRKEFISNVSHELRTPLT 205

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I G+ + L    L        +++  I + +  +  L+ND+LDL  +++G  +  +  I
Sbjct: 206 SIHGYAEALLEDDLED-KELIRKFLSIIESEAARMTRLINDLLDLEKLESGNTQFVFEKI 264

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS--- 702
              ++L  V+  I     +  + ++ +   +L   V D+ RL Q+   ++ NA+ ++   
Sbjct: 265 NFTEVLEHVRNIIEPLAKDYQVEVEFVYPDEL-YLVGDKDRLTQMTLNLVDNAIKYTSLK 323

Query: 703 SKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
            KG   V ++A ++N      VK+ G  IPE   K +F RF         +  G GLGLS
Sbjct: 324 EKGKKKVTVEAWKENNSIKLVVKDTGVGIPEKAQKKLFERFYRVDKARSRKMGGTGLGLS 383

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IV++ +  H G +  +S +   T     +P
Sbjct: 384 IVKTIVEKHNGVIEFTSKEGVGTKFVVTLP 413


>gi|186684333|ref|YP_001867529.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186466785|gb|ACC82586.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1105

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 133/755 (17%), Positives = 269/755 (35%), Gaps = 77/755 (10%)

Query: 90  DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE--GQ--SFDLVA 145
           DE  +  G     I     D     F   L      +L    E+      G+  SF+   
Sbjct: 225 DEIAQGWGYTPAEIQAMGKDL----FTQLLHPEDLARLPTYFERFNSAHPGEVLSFEYRI 280

Query: 146 ETQNDC------AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199
              N           +  R            L GI  ++ E       L      F++  
Sbjct: 281 RHVNGEWRWFCSYDTVHSRTVEGFP----KYLLGIAFDITERRHIEISLRQSNERFELAA 336

Query: 200 DSLDFLV--W--HRDQAGD---ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
            +++ L+  W  HR        +       ++  E     +Q+ I        ++     
Sbjct: 337 AAVNCLIYDWEIHRSSVERTQGLTQVLGYTQQEAEPTFEWWQQLIHPD----DQQRVNNQ 392

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSFGEA----GIAIDVSKEITVNDQ 304
             +S    N       + H + +   +      V ++ G+     G + D++++  +  +
Sbjct: 393 FMASMANGNRYSIEYRIRHKDGRYVWVQDQGFAVRDTNGQVVRVVGASADITEQQAILRE 452

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE---LWEIDLAFLATNPSNDELLEFLRS 361
                     +   +   +    ++    +       W I    L       EL      
Sbjct: 453 QQAALRDRQQIETNL--RESEERIRLATSAAELGMWFWNITTNELVWTEKCKELFGLGPE 510

Query: 362 ANKLPE-------QLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSN----- 407
                E         + +   E I   ++    +   +     +G    +          
Sbjct: 511 VEMSYELFLNCIHPEDRQRLNEAIARCFQEKVEYDIEYRSLWSDGSIHWIAAKGRVFYEA 570

Query: 408 --PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
               G  +   +++T +  +E             +D    G+    PD  I  +N AF  
Sbjct: 571 DDQPGRMMGTAQDITGRKQIENDLRQRETQLRRLVDSNIIGIMFATPDH-ITEANEAFLE 629

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWD--LFAAIITSFDDE--RKSLQGTLELL 521
           +       L  G   R        +  +  G +  L   +   F+ E  RK       L+
Sbjct: 630 MVGYTREELLAGKVRRKQMTPPEYHALDEQGIEQLLTVGVCNPFEKEYIRKDGSRIPILI 689

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +++E           +   +++T   + E+ L ++ E L++A++ K+ F+  +S+ELR
Sbjct: 690 GGALVE-----KDPPSWICFILDLTPRKQLEQTLRQQTEELKQANQNKDEFLAILSHELR 744

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           SPL  I+G++ LLK+ K     +  ++ +E I  ++ + + L++++LD++ +  G + L 
Sbjct: 745 SPLNPILGWSSLLKSRKFDEATT--NRALETIERNTQLQIKLIDELLDVSRIIRGKLNLT 802

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           ++T+ L  +++   +++       +I+IK+  D  +G    D  RL Q+   +LSNA+ F
Sbjct: 803 FATVNLASVIDAALETVRLIAESKSIQIKIQLDPNVGKVSGDYYRLQQVVGNLLSNAVKF 862

Query: 702 SSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           +    +V +  +          +  VK+ G  I  +    VF  F        R   G+G
Sbjct: 863 TPPNGSVEVSLSSSGELASHSALIQVKDTGQGISPEFLPHVFEYFRQADSSRTRKFGGLG 922

Query: 756 LGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
           LGL+IV + + LHGG V+ +S  +        R+P
Sbjct: 923 LGLAIVRNLVELHGGTVTAASPGEGQGAIFTVRLP 957


>gi|33597571|ref|NP_885214.1| virulence sensor protein [Bordetella parapertussis 12822]
 gi|37538294|sp|P40330|BVGS_BORPA RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33573999|emb|CAE38319.1| virulence sensor protein [Bordetella parapertussis]
          Length = 1238

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 162/387 (41%), Gaps = 12/387 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TE 470
            +++   +  +   E   N  ++     ID     + V   +GR+ L N A+   +  T 
Sbjct: 560 IVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTA 619

Query: 471 ENRLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +  L       N+      +R  +E     + A     F+D   +L G    +    + Y
Sbjct: 620 DAVLGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPY 679

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +  ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  II
Sbjct: 680 GDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAII 739

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L           +QS  ++    S+  LL L+ DILD+A ++AG   L      L 
Sbjct: 740 GMLELALLRPADQEPDRQS--IQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALR 797

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L     +       +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  
Sbjct: 798 ALPEGAIRLFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV 857

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIV 761
           V+   AR +G+     FSV + G  I E   + +F  F       +     G GLGLSI 
Sbjct: 858 VLTVTARPDGEAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSIS 917

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              + L GG + + S+    TT++  +
Sbjct: 918 RRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 94/274 (34%), Gaps = 30/274 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           +  ++ +     + L++ +   +VL D     ++ RD+ G +L  N +Y      T   V
Sbjct: 563 LRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAV 622

Query: 233 FQKAIGESRKLFKEEIKKRM-----ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
             K I E+  +    + + M        +A  +   E      HG  +      V     
Sbjct: 623 LGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPYGDS 682

Query: 287 -----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                G  G  ID+++   +  +L    E       A   F      +        +  +
Sbjct: 683 LGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGML 742

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--- 398
           +LA L             R A++ P++ + +   ++  S+ +      D   +  G+   
Sbjct: 743 ELALL-------------RPADQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDL 789

Query: 399 -TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
             +   + + P G  I +F+ L  Q  +E    T
Sbjct: 790 APVRTALRALPEGA-IRLFDGLARQKGIELVLKT 822


>gi|146305870|ref|YP_001186335.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574071|gb|ABP83603.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1165

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 148/378 (39%), Gaps = 10/378 (2%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E +           I+ + + +     DG  +  NPAF +++      +    
Sbjct: 295 IAERQRAEAEARRQRSTLLALINAIPDPIWFKDCDGVYRGCNPAFAAIFGRSPETVVGCR 354

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             +   A  SR     D   L + +    +       G           +          
Sbjct: 355 DEQLFDAELSRERAGLDRRALTSRMPLETETWLTHADGRRVFYDTLRAAFYDDRGQLLGL 414

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T     E A+        +A + K  F+ ++S+E+R+P+  IIG + L   + 
Sbjct: 415 VGTGRDITVRKEVEDAMARAKALAEQAAQAKADFLANMSHEIRTPMNAIIGMSHLALKT- 473

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q  Y+  I  +   LL ++NDILD + ++AG +++      L  +L+ +   I
Sbjct: 474 --DLDPRQRDYLNKIQQAGQHLLGVINDILDFSKIEAGKVRVECIEFDLEQVLDNLANLI 531

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
             K     + +    D ++    + D  RL QI     +NA+ F+  G   V ++  + +
Sbjct: 532 GDKAAGKGLELLFRRDAQVPCVLLGDPLRLGQILINYANNAVKFTEHGEVEVSIELEKRD 591

Query: 717 GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           G     +FSV++ G  +       +F  F        RR  G GLGL+I +      GG 
Sbjct: 592 GKQVWLLFSVRDTGIGLSPAQQARLFESFQQADSSTTRRYGGTGLGLAICKRLAEAMGGE 651

Query: 772 VSISSSDEGVTTINCRIP 789
           V + S     +   CR+P
Sbjct: 652 VGVDSELGRGSRFWCRLP 669



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 15/158 (9%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++AE      +     S    L +++   +W +D  G     N ++       G   +  
Sbjct: 294 QIAERQRAEAEARRQRSTLLALINAIPDPIWFKDCDGVYRGCNPAFA---AIFGRSPETV 350

Query: 237 IG-ESRKLFKEEIKKR---MISSSALEKNFCETVSTLEHGN-NKSYKIV-------RVLN 284
           +G    +LF  E+ +    +   +   +   ET + L H +  + +              
Sbjct: 351 VGCRDEQLFDAELSRERAGLDRRALTSRMPLETETWLTHADGRRVFYDTLRAAFYDDRGQ 410

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
             G  G   D++    V D +     +      A A F
Sbjct: 411 LLGLVGTGRDITVRKEVEDAMARAKALAEQAAQAKADF 448


>gi|16331424|ref|NP_442152.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1001594|dbj|BAA10222.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1178

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 143/656 (21%), Positives = 267/656 (40%), Gaps = 57/656 (8%)

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            S   +  E+ E       L+   + ++ L       +        +L  N    +  E  
Sbjct: 528  SNSQLLQEIIEKEQVSITLTTQEAKYRALVRDAGDAIILITIDFIVLEVN---YRAVELS 584

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
            G   ++ IG S  L    ++       A +++F  T+   +       ++V+        
Sbjct: 585  GYDQEELIGHS--LLD--LRLLTPEFYAQQRHFWRTLKREQISQLTDVRLVKKSGEL--- 637

Query: 290  GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
             I++D+S  +   +  +    I+H++T+   I  Q +   +  R  +E   ++  F+   
Sbjct: 638  -ISVDISASVITYENHSIVQCIVHDITLQKTIQAQLQRENYFRRQLLEKM-VEGLFVCYE 695

Query: 350  PSNDELLEFLRSANKLP-------EQLNWKTWKENIFSVYKSSETH-------------- 388
                  L+F      +        E++N   W E ++S  +  E                
Sbjct: 696  VEQFPFLQFTVWNPMMKNITGYSQEEINQCGWYETLYSHGQPQEAVRVRMKAVALGVDMV 755

Query: 389  KDTWH--LPNG--QTLHV---IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
            K+ W     +G  +T+ +   ++TSN +   + + +++T Q                 ++
Sbjct: 756  KEEWQIIRRDGALRTVEISTALITSNNQTNILAVIQDITDQKRQLQIIQNNEATLRCIVE 815

Query: 442  HLSEGVAVFGPDGRIKLSN-----PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            +L     +F     I  SN     P+F SL     + +     +         Y    + 
Sbjct: 816  NLP----IFFGMRTINFSNWYYINPSFESLTGYTPDEMYEDPLLWQKIHR-EEYAENLEQ 870

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAERAL 555
                    T F  E+K   GT   +    +E+ +  L + A+ ++   ++TD  RAE   
Sbjct: 871  ARPNLGEWTIFSMEKK--DGT--QIWAQTVEFLVDDLSDTARVVVFGQDITDIKRAEIET 926

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                   R+ +E K+ FV  VS+E R+PLT+IIGF +LL          K+ QY+  I  
Sbjct: 927  LRSLVKERELNEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYINNIQN 986

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRIKVISD 674
            SS  L  L++D+L ++  DA  +++    I L +L N++ ++ +     E+N  +     
Sbjct: 987  SSQRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLK 1046

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                S V D + L  I   ILSNA+ +S+ GST+ L  ++D    +F V++ G  IP   
Sbjct: 1047 PDEHSLV-DVRLLRHILENILSNAIKYSAPGSTITLDISKDEEHLLFQVRDEGIGIPLQD 1105

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +F  F   ++ G   G GLGLSIV+ ++   GG + + S     TT+  ++P 
Sbjct: 1106 QEKLFEAFHRASNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLPL 1161



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/448 (14%), Positives = 136/448 (30%), Gaps = 76/448 (16%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            +++E   K + + N  + F+ +F S+   +   D+   I +AN    +  +      ++
Sbjct: 261 RDISEWARKEQAIRNSEANFRDIFASIKDGLLVLDEDNYICYANA---QAVKLLNCTLEE 317

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
            +G      ++     ++        +   VS  E      Y     L S        D+
Sbjct: 318 LVGTIGSPLEDTEFSLLVD---DGTIYTVDVSVTEI---TWYGQTAKLVSL------RDI 365

Query: 296 SKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           S    + +QL       Y +L NL   + + + N  + + N        +    L     
Sbjct: 366 SDRKRMENQLRENQNKYYRLLENLDNGVIVHNANAEIVYANPKAESFLGL--TDLEGRDI 423

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-QTLHVIVTSNPRG 410
           +DE   F     +  E+  +      + +   S +  +   + P+  Q L   + + P  
Sbjct: 424 DDEYWMFFDKEGEKLEKEEFPV--AQVLANQSSLKNFEMGIYRPDTDQLLWAYINAYPEF 481

Query: 411 G-------TIWMFENLTVQVDLETKYNTLVKVQGETIDH--------------------- 442
                    I  F ++T +   E +  T+ +     I+                      
Sbjct: 482 YNEDTIQEIIVTFSDITERKLAEIQLKTINENLEVLIEERTSELESSNSQLLQEIIEKEQ 541

Query: 443 ------------------LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                               + + +   D  +   N     L   ++  L  G  + ++ 
Sbjct: 542 VSITLTTQEAKYRALVRDAGDAIILITIDFIVLEVNYRAVELSGYDQEEL-IGHSLLDLR 600

Query: 485 ATCSRYYNESD--GWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                +Y +       L    I+   D R   KS +     +S SV+ Y    +      
Sbjct: 601 LLTPEFYAQQRHFWRTLKREQISQLTDVRLVKKSGELISVDISASVITYENHSIVQCIVH 660

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADE 567
              +  T   + +R    + + L K  E
Sbjct: 661 DITLQKTIQAQLQRENYFRRQLLEKMVE 688



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 98/294 (33%), Gaps = 42/294 (14%)

Query: 293 IDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            D+S+    E  + +   +  +I  ++   + + D++ Y+ + N   V+L    L  L  
Sbjct: 261 RDISEWARKEQAIRNSEANFRDIFASIKDGLLVLDEDNYICYANAQAVKLLNCTLEELVG 320

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
              +              E   +    ++           + TW+   GQT  ++     
Sbjct: 321 TIGSPL------------EDTEFSLLVDDGTIYTVDVSVTEITWY---GQTAKLV----- 360

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
                    +++ +  +E +           +++L  GV V   +  I  +NP   S   
Sbjct: 361 ------SLRDISDRKRMENQLRENQNKYYRLLENLDNGVIVHNANAEIVYANPKAESFLG 414

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSVL 526
             +     G  I +          E    + F  A ++ +    +    G     +D +L
Sbjct: 415 LTD---LEGRDIDDEYWMFFDKEGEKLEKEEFPVAQVLANQSSLKNFEMGIYRPDTDQLL 471

Query: 527 EYSIIPLPN-------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
              I   P         + ++TF ++T+   AE  L   NE L    E + S +
Sbjct: 472 WAYINAYPEFYNEDTIQEIIVTFSDITERKLAEIQLKTINENLEVLIEERTSEL 525



 Score = 45.7 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 83/258 (32%), Gaps = 35/258 (13%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANKLPEQL 369
           IL N++  + + D +    F   +   ++   LA +    + + LL   R +  +L E+ 
Sbjct: 164 ILANISDTVFVTDLSGKFTFICSNIDNIFGYSLAEVNAMGTVETLLGDFRFNEYELKEKG 223

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
             K  + ++       +      +L     +++   +   G  ++   +++     E   
Sbjct: 224 ELKNLRHDV------QDKQGKIHYL----LINLKKVAINGGIYLYSCRDISEWARKEQAI 273

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                   +    + +G+ V   D  I  +N     L             +  +  T   
Sbjct: 274 RNSEANFRDIFASIKDGLLVLDEDNYICYANAQAVKLLN---------CTLEELVGTIGS 324

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              +++   L                GT+  +  SV E  I        +++  +++D  
Sbjct: 325 PLEDTEFSLLVD-------------DGTIYTVDVSVTE--ITWYGQTAKLVSLRDISDRK 369

Query: 550 RAERALTEKNEALRKADE 567
           R E  L E      +  E
Sbjct: 370 RMENQLRENQNKYYRLLE 387


>gi|90423355|ref|YP_531725.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90105369|gb|ABD87406.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 775

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 100/441 (22%), Positives = 184/441 (41%), Gaps = 41/441 (9%)

Query: 388 HKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
           H       NG  + + V         +     I +  ++T    L  +         + I
Sbjct: 323 HTFRMQHANGHWIWLRVRCELSQGAGDAGTHLIGIAVDITEHKSLAERTVEADLRLRDAI 382

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT---------CSRYY 491
           + + E   ++  + R+ L N  F+ L K  ++ ++PGT    +                 
Sbjct: 383 ETIPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETVVEVGTMPEARTRLPEAG 442

Query: 492 NESDGWDLFAAIITS----FDDERKSLQGTLELL----------------SDSVLEYSII 531
           +   G   F A + +       ER++  G    +                +D  L  +++
Sbjct: 443 HHPPGARTFEAQLDNGKWLHISERRTKDGGYVAVGTDITRIKEHEQKLVENDLRLRATVV 502

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            L  +Q  L    V     A++   EKN     A++ K+ F+ ++S+ELR+PL  IIGF+
Sbjct: 503 DLKRSQATLERQAVELVDLAQKYSEEKNR-AEDANQTKSKFLANMSHELRTPLNAIIGFS 561

Query: 592 DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +++ +   GSL + K  +Y   I  S   LL ++NDILD++ ++AG MKL+     L   
Sbjct: 562 EIMGSGMFGSLGSEKYQEYCHDILTSGHYLLEVINDILDMSKIEAGRMKLDLEPFDLATT 621

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L+E  + ++ +     + ++   D  +   +ADR+ + QI   +LSNA+ F+  G  V +
Sbjct: 622 LSESLRVVSGRADNKQLMLRADIDNDIP-VLADRRAIKQILVNLLSNAVKFTPDGGRVTV 680

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
           +        +  + + G  I +   + +   F            G GLGL+I +S  NLH
Sbjct: 681 RGRVFEEQIVLLIADTGIGIAKQSLRRLGQPFEQVESQLTKTYHGSGLGLAIAKSLTNLH 740

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG + + S     T +   +P
Sbjct: 741 GGSMRLRSQLGVGTVVRVALP 761



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 13/156 (8%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+D+++  ++ ++         + +  +  A  ++D    L   N  F  L ++  +
Sbjct: 355 IGIAVDITEHKSLAERTVEADLRLRDAIETIPEAFVLWDAENRLVLCNSHFQRLHKLPDS 414

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +    S + ++E       +PE         +     ++ E   D     NG+ LH+  
Sbjct: 415 AVTPGTSYETVVEV----GTMPEARTRLPEAGHHPPGARTFEAQLD-----NGKWLHISE 465

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
                GG + +  ++T   + E K          T+
Sbjct: 466 RRTKDGGYVAVGTDITRIKEHEQKLVENDLRLRATV 501


>gi|237716428|ref|ZP_04546909.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262408028|ref|ZP_06084576.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|294645444|ref|ZP_06723147.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809529|ref|ZP_06768226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444075|gb|EEO49866.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262354836|gb|EEZ03928.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|292639213|gb|EFF57528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294443269|gb|EFG12039.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 499

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 121/513 (23%), Positives = 224/513 (43%), Gaps = 43/513 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR-SFVELWEIDLAFLATNPSNDELLE 357
           +    Q  +  E+L+ L   + IFD N  +   N+ +F EL          +PS +++L 
Sbjct: 1   MEDYKQTLYNDELLNILPDGVIIFDTNGEVIQLNQQAFAEL--------HVHPSVNDMLP 52

Query: 358 FLRSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG--- 411
           F    N+L + LN    KE+I S + +     ++T+ LP    +   V  T  P  G   
Sbjct: 53  F--PTNRLFKLLNK---KEDILSTILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGEFA 107

Query: 412 ----------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI--KLS 459
                      ++ F N+TV++  E   NT ++       +     + F  D R    L 
Sbjct: 108 TIRDRTNLNKILFFFRNITVELTQEYILNTALQRTRIYPWYYDISRSEFTLDDRYFEHLG 167

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            PA  +   T E  ++   H  +       +  +  G   F   +  F   R    GT E
Sbjct: 168 IPAGENNTLTMEEYVNM-IHPDDRQPMADAFVVQLSGNTTFDKTV-PFRLRRG--DGTWE 223

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                    + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S+E
Sbjct: 224 WFEGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHE 283

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++DILDL+ +++  +K
Sbjct: 284 IRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNTIK 343

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             +S   LN L+ ++++  A K   + I IK +   +      D  RL Q+    ++NA 
Sbjct: 344 FTFSNCSLNSLMMDIEKEQAMK-PISEIEIKSLLPDEDVYINTDITRLKQVICNFINNAR 402

Query: 700 DFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
            F+ KG  +      DN         V++ GS IP++    +F+RF        ++G GL
Sbjct: 403 KFTQKG-YIHFGYTLDNRNADSVQIFVEDTGSGIPQECLNEIFDRFYKVDTF--KQGTGL 459

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI ++ +    G +S+ S     +     +P
Sbjct: 460 GLSICKTIVEHLQGDISVKSEIGKGSCFTVTLP 492


>gi|224370417|ref|YP_002604581.1| multidomain fusion protein (N:DNA-binding domain/C:signal
           transduction histidine kinase) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693134|gb|ACN16417.1| multidomain fusion protein (N:DNA-binding domain/C:signal
           transduction histidine kinase) [Desulfobacterium
           autotrophicum HRM2]
          Length = 772

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/403 (23%), Positives = 166/403 (41%), Gaps = 51/403 (12%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +   L++     ++     V +    G I+  N  F  +          G  +  +  
Sbjct: 228 EEEIRKLLR----AVEESPSSVVITDAFGAIEYVNTKFCEVT---------GYTVSEVLG 274

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEY---SIIPLPNAQTMLT 541
              R  N       F   +     + +  +G       D  L +   SI PL +A+  +T
Sbjct: 275 QNPRVLNSDIQSKAFYREMWETLSQGQEWRGEFCNKKKDGTLYWEHASISPLCDARGNIT 334

Query: 542 FV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  +VT++ R  + L +  EA   ++  K+ F+  +S+ELR+PL  IIGF+++L+ 
Sbjct: 335 HYVAVKEDVTETKRILQELEKAREAAEVSNIAKSDFLTSMSHELRTPLNAIIGFSEVLQD 394

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L  KQS+Y++ I  +   LL+L+NDILDL+ V+AG M L   ++ ++D +     
Sbjct: 395 RFFGPLTDKQSEYLDDILGAGQHLLSLINDILDLSKVEAGKMMLEIKSVKVSDAIETGLV 454

Query: 657 SIATKMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +  K+  + I +K          +  AD ++L QI   ILSNA+ F+  G T+ ++   
Sbjct: 455 MLKEKIACHGITVKTDFKETCHKLTLAADERKLKQIIFNILSNAVKFTPDGGTITIEMMV 514

Query: 715 DNGD------------------------FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHR 748
            + D                         I S+ + G  I  +    +F  F       R
Sbjct: 515 LDPDPIPGTDILPDWMQKATGQVGKQPHLIISIADTGIGISSEDLPHIFEEFYQTLAGIR 574

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
               G GLGL + +    LHGG +   S   +  +     +P 
Sbjct: 575 ASTPGTGLGLPLSKRMAELHGGTIMAHSEGPDKGSRFTLLMPL 617


>gi|260170318|ref|ZP_05756730.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|315918681|ref|ZP_07914921.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|313692556|gb|EFS29391.1| two-component system histidine kinase [Bacteroides sp. D2]
          Length = 499

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/515 (23%), Positives = 224/515 (43%), Gaps = 43/515 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR-SFVELWEIDLAFLATNPSNDELLE 357
           +    Q  +  E+L+ L   + IFD N  +   N+ +F EL          +PS +++L 
Sbjct: 1   MEDYKQTLYNDELLNILPDGVIIFDTNGEVIQLNQQAFAEL--------HVHPSVNDMLP 52

Query: 358 FLRSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG--- 411
           F    N+L + LN    KE+I S + +     ++T+ LP    +   V  T  P  G   
Sbjct: 53  F--PTNRLFKLLNK---KEDILSTILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGEFA 107

Query: 412 ----------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI--KLS 459
                      ++ F N+TV++  E   NT ++       +     + F  D R    L 
Sbjct: 108 TIRDRTNLNKILFFFRNITVELTQEYILNTALQKTKIYPWYYDISRSEFTLDDRYFEHLG 167

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            PA  +   T E  ++   H  +       +  +  G   F   +  F   R    GT E
Sbjct: 168 IPAGENNTLTMEEYVNM-IHPDDRQPMADAFVVQLSGNTTFDKTV-PFRLRRG--DGTWE 223

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                    + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S+E
Sbjct: 224 WFEGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHE 283

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++DILDL+ +++  +K
Sbjct: 284 IRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNTIK 343

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             +S   LN L+ ++++  A K   + I IK +   +      D  RL Q+    ++NA 
Sbjct: 344 FTFSNCSLNSLMMDIEKEQAMK-PISGIEIKSLLPDEDVYINTDITRLKQVICNFINNAR 402

Query: 700 DFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
            F+ KG  +      DN         V++ GS IP++    +F+RF        ++G GL
Sbjct: 403 KFTQKG-YIYFGYTLDNRNANSVQIFVEDTGSGIPQECLNEIFDRFYKVDTF--KQGTGL 459

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI ++ +    G + + S     +     +P +
Sbjct: 460 GLSICKTIVEHLQGDIFVESKIGEGSCFTVTLPFE 494


>gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1302

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 149/385 (38%), Gaps = 11/385 (2%)

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            G  W+           +     V  + + I+  ++ +      G     N    S+    
Sbjct: 766  GIAWVTTLKRRVKKQTSLIRQQVDKEKQLIEAATDFIFTLDLQGNFTSFNSTCESITGFS 825

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
             + +        +    ++    +       A   S   E     G+ +L  ++ L +  
Sbjct: 826  RDEIKTMLVYDLLNKADAKLARLALTRRKTKAETKSLQSEIIRKDGS-KLWVETSLRFLR 884

Query: 531  IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                         ++T   +  + LT   +A     + K++F+  +S+ELR+P+  +I  
Sbjct: 885  TEGKVTGMFCIMRDITLRKKVHQELTRARDAAESNTKAKSAFLATMSHELRTPMNGVISM 944

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             ++L  +    L+  Q  Y   I  S   LL L+NDILDL+  +AG + +    + L +L
Sbjct: 945  ANILLDT---DLDETQRDYTSTIRDSGESLLTLLNDILDLSKAEAGKLSIEPFELDLKEL 1001

Query: 651  LNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
            LN+    ++T   + NI+++  ++D      + D  R+ Q+   +  NA+ F+  G   +
Sbjct: 1002 LNQSVSLLSTTAQQKNIQLETNVTDDTPTLLIGDAGRIKQVILNLTGNAIKFTEDGHVKI 1061

Query: 709  ILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
             +    D     +    +++ G  I E     +F  F      H  +  G GLGL+I + 
Sbjct: 1062 NVSKLEDTNKHVNIRIEIEDTGVGISETAASRLFRPFEQADGSHSRRFGGTGLGLAISKE 1121

Query: 764  FINLHGGHVSISSSDEGVTTINCRI 788
             + L  G + + S     +T    +
Sbjct: 1122 IVELMDGEIGVDSVLGKGSTFWFTL 1146


>gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 110/519 (21%), Positives = 203/519 (39%), Gaps = 32/519 (6%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQ---NRYLQFHNRSFVELWEI 341
           A +A + S E     Q     E         A++    D    +R + + N  F E+W  
Sbjct: 70  ASLAGNKSAEDLGQRQYRLIAE-----ATGDAVWMAEVDPATLDRNIVYANSGFEEIWGR 124

Query: 342 DLAFLATNPSNDELL----EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            +  L +            ++    + L   L  +   +  F V +     +  W   + 
Sbjct: 125 SVDDLKSQGCVYNRWIHKEDYNWVGDALTGFLKGEHGCDIEFRVMRPDGAVRWVWTRAD- 183

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
                +  S      +    ++T             +      D+ S+ + +   DG   
Sbjct: 184 ---RFLDESGQIKFVVGFSRDITQLKSSRLAQEESERYYRSLFDNSSDAIRIVAMDGSTT 240

Query: 458 LSNPAFRSLWK-TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
             NPAF  L     E  LS G                 +   +       ++ E  + +G
Sbjct: 241 DVNPAFERLIGRKREAVLSLGCEDLTPPEWLPMEREIIEKQIMVRGYSDVYEKEYYTGEG 300

Query: 517 -TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             +++   S L  S    P A   +         R E  L +   A   A+  K+ F+  
Sbjct: 301 GRVQVAMRSSLIRSANGEPTAICGIARDISEQKSRHE-ELMKAKLAAESANSAKDRFLAM 359

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PL  I+G+ ++L        +    ++++ I  S+  + +LV+DILD + +++
Sbjct: 360 VSHELRTPLNPIVGYAEILAAKI---EDPMAQRFLKIIKESAKGMASLVSDILDYSMIES 416

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G + +   T  ++DLL+ V + I +   E   +I+V  DG      AD+++L Q+ S ++
Sbjct: 417 GRIDIEVETFRMSDLLSLVSRQIESVALERGNKIQVDLDGGDPWVEADKRKLSQVVSNLV 476

Query: 696 SNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
           +NA  F+  G  +I       +++       V + G  IPE   +++F  F    + H+ 
Sbjct: 477 ANACKFTQNGKILISSSASQTSKEAYSVRIEVSDTGIGIPESELETIFEPFEQLGSVHKA 536

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + RGVGLGL+I    +   GG +S+SS     T     +
Sbjct: 537 ETRGVGLGLAICRQLVGALGGTISVSSQLGSGTIFTVDL 575



 Score = 38.0 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 72/222 (32%), Gaps = 28/222 (12%)

Query: 138 GQSFDLVAETQNDCAIKIEG-RVSGSCAFL-----RILSLDGI-------YSELAETTLK 184
           G +     + ++ C I+    R  G+  ++     R L   G          ++ +    
Sbjct: 149 GDALTGFLKGEHGCDIEFRVMRPDGAVRWVWTRADRFLDESGQIKFVVGFSRDITQLKSS 208

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET----------EGIVFQ 234
                     ++ LFD+    +      G     N ++++              E +   
Sbjct: 209 RLAQEESERYYRSLFDNSSDAIRIVAMDGSTTDVNPAFERLIGRKREAVLSLGCEDLTPP 268

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
           + +   R++ +++I  R  S    ++ +      ++     S             GIA D
Sbjct: 269 EWLPMEREIIEKQIMVRGYSDVYEKEYYTGEGGRVQVAMRSSLIRSANGEPTAICGIARD 328

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           +S++ + +++L        +   A     ++R+L   +    
Sbjct: 329 ISEQKSRHEELMKAKLAAESANSA-----KDRFLAMVSHELR 365


>gi|33601971|ref|NP_889531.1| virulence sensor protein [Bordetella bronchiseptica RB50]
 gi|34978360|sp|P26762|BVGS_BORBR RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33576409|emb|CAE33487.1| virulence sensor protein [Bordetella bronchiseptica RB50]
          Length = 1238

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 162/387 (41%), Gaps = 12/387 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TE 470
            +++   +  +   E   N  ++     ID     + V   +GR+ L N A+   +  T 
Sbjct: 560 IVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTA 619

Query: 471 ENRLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +  L       N+      +R  +E     + A     F+D   +L G    +    + Y
Sbjct: 620 DAVLGKTIPEANVVGDPALAREMHEFLLTRMSAEREPRFEDRDVTLHGRTRHVYQWTVPY 679

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +  ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  II
Sbjct: 680 GDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAII 739

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L           +QS  ++    S+  LL L+ DILD+A ++AG   L      L 
Sbjct: 740 GMLELALLRPADQEPDRQS--IQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALR 797

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L     +       +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  
Sbjct: 798 ALPEGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV 857

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIV 761
           V+   AR +G+     FSV + G  I E   + +F  F       +     G GLGLSI 
Sbjct: 858 VLTVTARPDGEAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSIS 917

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              + L GG + + S+    TT++  +
Sbjct: 918 RRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 94/274 (34%), Gaps = 30/274 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           +  ++ +     + L++ +   +VL D     ++ RD+ G +L  N +Y      T   V
Sbjct: 563 LRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAV 622

Query: 233 FQKAIGESRKLFKEEIKKRM-----ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
             K I E+  +    + + M        SA  +   E      HG  +      V     
Sbjct: 623 LGKTIPEANVVGDPALAREMHEFLLTRMSAEREPRFEDRDVTLHGRTRHVYQWTVPYGDS 682

Query: 287 -----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                G  G  ID+++   +  +L    E       A   F      +        +  +
Sbjct: 683 LGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGML 742

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--- 398
           +LA L             R A++ P++ + +   ++  S+ +      D   +  G+   
Sbjct: 743 ELALL-------------RPADQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDL 789

Query: 399 -TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
             +   + + P G  I +F+ L  Q  +E    T
Sbjct: 790 APVRTALRALPEGA-IRVFDGLARQKGIELVLKT 822


>gi|220910721|ref|YP_002486031.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219867493|gb|ACL47830.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 766

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 179/420 (42%), Gaps = 34/420 (8%)

Query: 395 PNGQTLHVIVTSNP----RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           P+GQ   V  +S P     G   W  +  +++ +   E       +     + + ++G+ 
Sbjct: 183 PSGQLKWVEASSRPLLNTNGSITWYGILLDVSDRKRAEIALRQYER----IVANTTDGII 238

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           +     R +++N  +   +      +        ++    +   E++        +    
Sbjct: 239 LIDTQFRYQIANQTYLLWYNKSIFEIIGFP----VSKIIGQDVFETNFRPYLVRCLAGET 294

Query: 509 DERKSLQGTLELLSDSVLEYSIIP-----LPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            E +     +  L       +  P     L  A  + +  N+T    AE+ L +  E   
Sbjct: 295 IESREW-FEIPTLGRQFFSVTYSPYLDENLAIAGIVASLRNITSLKLAEQELEKAKEEAE 353

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA + K+ F+ ++S+ELR+PL  I+  T ++  +       +  +Y++ IS +S  LL +
Sbjct: 354 KASQAKSLFLANMSHELRTPLNVILIMTQMMNRTANKI--PEYQEYIDLISRNSDHLLKM 411

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +ND+LDL  V+A    L  S   L +LL  +  +   +  + +I+I +  D K+   +  
Sbjct: 412 INDVLDLFKVEAEKASLENSETNLFELLQSIYVTFKQQCTDKHIQINLEIDEKVPRLILV 471

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-------FSVKNNGSSIPE 732
           D Q+L Q+   ++ NA+ F+  G     V ++  +D   +        F+V++ G  I  
Sbjct: 472 DVQKLQQVLINLIGNAVKFTEHGEITVRVTVELTQDKTKWQDASIPLAFTVEDTGVGIAP 531

Query: 733 DMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +    +F+ F   A   Q   G GLGLSI +  + L GG +++ S+    +T +  +P +
Sbjct: 532 EEMNQIFDAFAQAAAGRQMTGGTGLGLSISQGLVQLMGGEITVKSTLGVGSTFHFVLPVQ 591



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 15/186 (8%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH--RDQAG--DILWANISYK 223
              +     +  +T ++ +      + F+ L  ++  +++   +   G     + + + +
Sbjct: 72  FNQMAEQLQQFFQTKVEAEANRQSEARFQQLAAAVPGMIYTLTQSPDGSQKFEYVSSASR 131

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET-----VSTLEHGNNKSYK 278
              E E     + I    +    + +      SA   +  E       +    G  K  +
Sbjct: 132 TILELESEQALEDINSVIEQIHPDDRSTYDEVSAQSVSLMEPFSLSFRTITPSGQLKWVE 191

Query: 279 -----IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
                ++    S    GI +DVS        L     I+ N T  I + D     Q  N+
Sbjct: 192 ASSRPLLNTNGSITWYGILLDVSDRKRAEIALRQYERIVANTTDGIILIDTQFRYQIANQ 251

Query: 334 SFVELW 339
           +++ LW
Sbjct: 252 TYL-LW 256


>gi|71908547|ref|YP_286134.1| PAS [Dechloromonas aromatica RCB]
 gi|71848168|gb|AAZ47664.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 955

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/522 (19%), Positives = 192/522 (36%), Gaps = 56/522 (10%)

Query: 306 THTYEILHNLTV-AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 L N    A+  +D    + + N +  +L+            +  + +       
Sbjct: 296 RQLSATLENTPDVAVQWYDLQGRVIYWNHASEQLYGWSAEEAIGQRLDRLIFDR------ 349

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-------TIWMFE 417
             +  N+    + + +  K     + +    + +   V  T     G        + M  
Sbjct: 350 -EQTDNFTRLLDEVAASGKPIGPAEYSIRTRDDELRWVEATMFSIPGESPEKPILVCMDV 408

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +   E +     +     ++  ++ V      G  +  + A   +      R   G
Sbjct: 409 DITDRKQAEKELADFNRDFEAFLNQTTDFVYFKDAKGCFRFCSQAMAEISGHASWREMIG 468

Query: 478 THIRNI-AATCSRYYNESD------GWDLFAAIITSFD----------------DERKSL 514
            H R I     +R Y E +      G  L   I   +D                DE+K +
Sbjct: 469 KHDREIFPPDTARVYQEEEYRVLTEGRPLLNKIEPYYDADGQRGYVQTYKWPLFDEQKRV 528

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSF 572
            G   +  D   +       N + +       + + AER   L    E+   A+  K+ F
Sbjct: 529 VGLFGVSRDISEQVR-----NEEELAQHRLHLEELVAERTEELAVAKESAEAANVAKSEF 583

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I G   L++    G L  +Q + ++ +  +S  LL  +N ILDL+ 
Sbjct: 584 LANMSHEIRTPLNAISGMAHLIRR---GGLAPEQMERLDRLELASEHLLETINAILDLSK 640

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++AG   L  + + +  +L+ V   +  +    ++++ V SD  L   + D   L Q   
Sbjct: 641 IEAGKFSLEEAPLRVAGILDNVTAILQDRAQAKHLQLSVESDPTLPPLLGDPVHLQQALL 700

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +SNA+ F+  G  + L+A R + D       F V++ G  I  +    +F+ F    +
Sbjct: 701 NYMSNAIKFTESG-RITLRARRVDEDADSLLLRFEVEDTGIGIAPEHLPRLFSAFEQADN 759

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               +  G GLGL+I      L GG    SS     +T    
Sbjct: 760 SITRRYGGTGLGLAITRKIARLVGGDAGASSVLGQGSTFWLT 801


>gi|242278251|ref|YP_002990380.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121145|gb|ACS78841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 542

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 172/392 (43%), Gaps = 41/392 (10%)

Query: 424 DLETKY----NTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +LE++     N L +     IDH+ E V+V  +  +  +   N A   L+   +      
Sbjct: 22  ELESQLCGTDNYLEERFRRLIDHV-EMVSVQGYNKNREVVFWNKASEKLYGYSQEEALGM 80

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                I     R    +   D         D   +   G L+L+     + SI+P+ +A 
Sbjct: 81  KLEELIIPDYMREAVINHIQDW-------HDKGIRIPAGELDLIHK---DGSIVPVYSAH 130

Query: 538 TM-----------LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            M              V++T++ +A R L +  E    A   K+ F+ ++S+E+R+PL  
Sbjct: 131 VMQKNPDGSKYMYCIDVDLTETKKAHRQLIQAKEQAESASRAKSEFLANMSHEIRTPLNG 190

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   LLK+        KQ +Y+E        L  L++DILDL+ V+AG + ++ +   
Sbjct: 191 VLGMLQLLKS---APEKEKQLEYIELAVTGVKRLTTLLSDILDLSRVEAGKLAVDPAPFD 247

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L +L+  +         +  +++ +      +     D  RL Q+ + I+SNA+ F++ G
Sbjct: 248 LLELMQNLTDLYRPSAQQKGLKLNLSLHPTTITKLTGDSSRLQQVLTNIISNAIKFTNDG 307

Query: 706 STVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
             + ++              +FSV + G  IP+   + +F+ F+  +   +   +G GLG
Sbjct: 308 -IIKVETYPLPHTTAGTTKILFSVSDTGPGIPDSKMEELFSPFIQLSEGYQRTHQGAGLG 366

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI +  + L GG++SI S     TT+   IP
Sbjct: 367 LSICKQLVELMGGNISIESELGIGTTVYLCIP 398


>gi|330938948|gb|EGH42439.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 576

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/523 (22%), Positives = 210/523 (40%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+  
Sbjct: 342 RDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +    +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L    
Sbjct: 402 LLIVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRL 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VPASQAGLIDGDWPTYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|311746666|ref|ZP_07720451.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1]
 gi|126578338|gb|EAZ82502.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1]
          Length = 1436

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 123/648 (18%), Positives = 248/648 (38%), Gaps = 53/648 (8%)

Query: 184  KCKKLSNHISVFKVLFDSLDFLV----WHRDQ-AGDILWA--NISYKKNTETEGIVFQKA 236
            +  +L   +   K + +    L     W  D     I W+    +  +  +      +  
Sbjct: 387  RRARLEKDLKETKEILEETGKLARVGGWTLDPIQQKISWSPMTRAIHEVDDDFVPELETG 446

Query: 237  I-----GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEA- 289
            I     GESR+   E I++ M   +  + +        + GN    + +  V  + G   
Sbjct: 447  INFYKEGESREKITEAIEQAMTYGTPWDLDLQ---LVTQKGNEIWVRAIGNVDFNDGVCT 503

Query: 290  ---GIAIDVSKEITVNDQLTHTYEILHNL-----TVAIAIFDQNRYLQFHNRSFVELWEI 341
               G   D++KE T   +     ++L  +      V+I   +    +   N    ++   
Sbjct: 504  RLFGTFQDINKEKTAELEAARNRKLLDEVFKAASEVSIIATNLEGTITVFNEGAEKMLGY 563

Query: 342  DLAFLATNPSNDEL---LEFLRSANKLPEQLNWK--TWKENIFSVYKSSETHKD-TWHLP 395
                L    +        E +  A  + +   +K   ++  +    +      D T+   
Sbjct: 564  KAEELIGKKTPVIFHLEEEVIAHAKDVSQDFGYKIEGFQSFVARANRDGSEKIDWTYVRK 623

Query: 396  NGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +G T  V +   P         G + +  +LT + ++E             ++H    VA
Sbjct: 624  DGDTRLVSLAVTPVKDHDNKSIGYLGIAIDLTEKRNIEIDLVNEKSRLSAFVEHTPAAVA 683

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            +   D      +  +   ++ +   +   +H  ++ +        ++ + +        +
Sbjct: 684  MLDKDMCYIAVSNRWEEEYEYKSEEVIGKSHF-DLFSELMNEERRANYYQVLQGDFLINN 742

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKA 565
            +E+    G +E    S  E     L N +    M+   N+T  V     L E  E+  +A
Sbjct: 743  EEKIFFPGEIEPRFISW-EMRPWYLYNGEIGGIMVFTQNITALVAQREELKEAKESAEEA 801

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             + K+ F+ ++S+E+R+PL  +IGFTDL+  +K   LN  Q QY+  +  S+  LL+++N
Sbjct: 802  SKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTK---LNETQHQYLSIVHQSANQLLSIIN 858

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
            DILD + ++AG ++L+     L ++ ++    I  ++    + + +     L     AD 
Sbjct: 859  DILDFSKIEAGKLELDIDKCDLYEMASQATDIITYQIQNKGLEMLLNIGTNLPRFIYADS 918

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             RL Q+   +L N+  F+ KG   +    L++  ++  F FSV++ G  I  +    +F 
Sbjct: 919  VRLKQVLVNLLGNSSKFTEKGEIELKIENLESEGNSNTFRFSVRDTGIGIKPEKQSKIFE 978

Query: 741  RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             F            G GLGL+I    + L    + + S     +T   
Sbjct: 979  AFSQEDSSTTKKYGGTGLGLTITNKLLGLMDSKLQLKSEVGKGSTFFF 1026



 Score = 54.2 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 62/440 (14%), Positives = 131/440 (29%), Gaps = 36/440 (8%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE- 227
            S+  I  ++     +   L       +  F++   L+   D  G  L  N S       
Sbjct: 251 QSVFAIGRDITLEKNRELMLIESEQKLRAFFENSQGLMCTHDLDGKFLSVNSSGAGILGY 310

Query: 228 -TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY------KIV 280
             E I+ +       +    EI+  +       K   + ++    G  K++      +  
Sbjct: 311 KPEEIMSKTLFDIVPEYKHHEIQGYLAQIKKEGKAAGQMLTLHRDGTKKTWLFNNVLQKN 370

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFV 336
            +  S+   G AID+++   +   L  T EIL        V     D  +     +    
Sbjct: 371 DLDGSYYVIGNAIDITRRARLEKDLKETKEILEETGKLARVGGWTLDPIQQKISWSPMTR 430

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHL 394
            + E+D  F+    +     +   S  K+ E +         + +     T K  + W  
Sbjct: 431 AIHEVDDDFVPELETGINFYKEGESREKITEAIEQAMTYGTPWDLDLQLVTQKGNEIWVR 490

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPD 453
             G   +V             F+++  +   E +     K+  E     SE  +     +
Sbjct: 491 AIG---NVDFNDGVCTRLFGTFQDINKEKTAELEAARNRKLLDEVFKAASEVSIIATNLE 547

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTH----------IRNIAATCSRYYNESDGWDLFAAI 503
           G I + N     +   +   L               I +       +  + +G+  F A 
Sbjct: 548 GTITVFNEGAEKMLGYKAEELIGKKTPVIFHLEEEVIAHAKDVSQDFGYKIEGFQSFVAR 607

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
                 E+       +     ++  ++ P+ +                E+    +N  + 
Sbjct: 608 ANRDGSEKIDWTYVRKDGDTRLVSLAVTPVKDHDNKSIGYLGIAIDLTEK----RNIEID 663

Query: 564 KADEIKNSFVQHVSYELRSP 583
             +E K+     V +   +P
Sbjct: 664 LVNE-KSRLSAFVEH---TP 679



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 91/281 (32%), Gaps = 25/281 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           ++   N +L H  ++    +  + +   + Y +  + S  +L       L         L
Sbjct: 144 EDRKKNMELRHFEKMFQLSSDLVCLASVDGYFKKLSPSVEKLLGWGEDVLLGK----SFL 199

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHLPNG--QTLHVIVTSNPRGGT 412
           E +   +K       ++ K+ +  + +   T      +   +G   T+    +  P   +
Sbjct: 200 ELIHEEDK-------ESSKKELEKLGQGIPTINFINRFLKKDGGYITIQWTASPEPETQS 252

Query: 413 IWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           ++    ++T++ + E       +      ++    +     DG+    N +   +   + 
Sbjct: 253 VFAIGRDITLEKNRELMLIESEQKLRAFFENSQGLMCTHDLDGKFLSVNSSGAGILGYKP 312

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             +   T    +       Y   +     A I        + L    +    + L  +++
Sbjct: 313 EEIMSKTLFDIVPE-----YKHHEIQGYLAQIKKEGKAAGQMLTLHRDGTKKTWLFNNVL 367

Query: 532 PLPN----AQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              +       +   +++T   R E+ L E  E L +  ++
Sbjct: 368 QKNDLDGSYYVIGNAIDITRRARLEKDLKETKEILEETGKL 408


>gi|313149705|ref|ZP_07811898.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138472|gb|EFR55832.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 641

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 103/518 (19%), Positives = 209/518 (40%), Gaps = 36/518 (6%)

Query: 290 GIAID----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G A D    +     + +       +L    +A   +D           +  +  +  A 
Sbjct: 4   GHAKDSFSGMENIEKLKEDYQKITSVLAGHQIAFWEYDIPTGECNFTDEYFSILGLKEAG 63

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS--------VYKSSETHKDTWHLPNG 397
           +       E+ +F R A+   +  +++T    +          V +    H +T  L + 
Sbjct: 64  IV----FREINDFYRFAHPD-DVTSYQTAFNRMLESDTKTSQIVVRCLGEHGETIWLEDN 118

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
              +     N     I    N+T + + E +   L +   + I+ L E          I 
Sbjct: 119 FIAYKKNKENGSDKIIAYTANITSRCEKEVQIRQLEERNRKIIEALPE---------FIF 169

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQ 515
           + +  F                +  +     R    ++  +LF + I       + K ++
Sbjct: 170 IFDDNFFITDVLMAPDTELLHPVEVLKGADGRSIYSAEVSELFISSIRECLKSGKLKEIE 229

Query: 516 GTLELLSDS-VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             L++ +     +  I P    + +    ++ D +R  + L +      +AD +K+ F+ 
Sbjct: 230 YPLDVETGRHYFQARIAPFEGNKVLALIHDIGDRIRRSQELLDAKRRAEEADRMKSLFLA 289

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I+GF++++    L     ++ +Y+  I  +S +LL L+NDILDL+ ++
Sbjct: 290 NMSHEIRTPLNAIVGFSEIIA---LTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIE 346

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +G  +++     ++ L +EV +    KM +  + + VI          DR R+ Q+    
Sbjct: 347 SGKSEMHCQLTEISGLADEVYKVHRLKM-KKGVELNVIRPSDEIWISTDRNRVTQVLFNF 405

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           LSNA+  + +GS +     ++     F V + G  I ++    +F RF       Q  G 
Sbjct: 406 LSNAIKNTIEGS-ITFGLVKEEEWVKFYVADTGCGISKEKLPLIFTRFEKLNDFVQ--GT 462

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL I +S +   GG + + S  E  +T    +P+K+
Sbjct: 463 GLGLPICKSIVERLGGRIEVESELEKGSTFTLYLPNKQ 500


>gi|298241118|ref|ZP_06964925.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554172|gb|EFH88036.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 938

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 126/745 (16%), Positives = 268/745 (35%), Gaps = 72/745 (9%)

Query: 73  HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATE 132
             L+ E N   +  D   +  E++G+          D  +             +L  A E
Sbjct: 223 EGLVLEINQRPLA-DSLCQREEVVGKPFIETPWWSYDPAVQ-----------QQLHTAIE 270

Query: 133 KL-RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
           +  R +   F+     Q    + +   ++        L  DG    L             
Sbjct: 271 QASRGKSVHFEARIHPQEGWYLDLTVTMTPH------LDADGHVEYLIYAGRDITARKRA 324

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK- 250
            +    L D++   VW     G + + N  +   T +  I   +  G  + L  ++ ++ 
Sbjct: 325 EAELHALVDAIPQQVWTIRPDGYLDYCNQRWLDYT-SLSIEQAQGDGWIQCLHPDDRQRI 383

Query: 251 ----RMISSSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFGEA----GIAIDVSKEIT 300
               +M   + +     + +     G  + + +    V +  G+     G + D+ ++  
Sbjct: 384 QDAWQMSRKTGMPFETEQRLRHGMTGTYRWFLVRALPVRDETGQIIKWFGTSTDIEEQKR 443

Query: 301 VNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              +L  + E        +   + +   +   ++ N+ + +   + L  + ++      L
Sbjct: 444 AEQKLKESEERFRLLAETVPQVVWVARPDGQHEYTNQHWCDYTGLTLEQIQSDRWAQ--L 501

Query: 357 EFLRSANKLPEQLNWKTWKE-----NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
            F    ++   Q  W+   +           ++ +T +  W L  G  +         G 
Sbjct: 502 PFFHPDDREDRQARWQHALDTGAMYEHEGRLRNGQTGEYRWFLTRGVPMRDEA-----GQ 556

Query: 412 TIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            +  F    ++  Q   E       K     ++    G+ +   + +I  +N  F  +  
Sbjct: 557 IVKWFGTSTDIEEQKRTEEALRQSQKRASVLMNSNMIGINIIEGE-QIVDANDTFLHMTG 615

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                L  G  +  +  T   Y   +       A   S   E++ +         S L  
Sbjct: 616 YTREDLRAG-RLNWMRMTLPEYLARTRQAHQELAAQQSITYEKEYV-----CKDGSRLPV 669

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +  +         +       A + L          ++ K+SF+   S+ELR+PL ++ 
Sbjct: 670 LVCGVVLQHHPFQGIAFILDNSARKEL----------EQRKDSFISMASHELRNPLASLK 719

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
             T L++       + + +  +  +      L  L+ ++LD++ + AG ++    T+ L+
Sbjct: 720 MQTQLVRKRLEKQTHHEAAALLSRVEGPVKQLERLIGELLDVSKIQAGRLEYLQETVDLD 779

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            LL+EV  ++      + I   V+      S V D+ RL Q F+ +LSNA+ +S    TV
Sbjct: 780 ALLHEVADTMQQLSPTHTI---VVRGAVPCSLVGDKDRLWQAFTNLLSNAIKYSPDAETV 836

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            +  +      +  V+++G  IP + C  +F+RF   +   QR   G+G+GL IV   + 
Sbjct: 837 EMDLSASAEIVMIRVRDHGLGIPREQCDKIFDRFYRVSGPRQRAIPGLGMGLYIVAEIVK 896

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG + + S+    +T    +P++
Sbjct: 897 AHGGTIMVDSAVGKGSTFTVTLPTR 921



 Score = 44.9 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 81/275 (29%), Gaps = 30/275 (10%)

Query: 295 VSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +S    +      + E L      L  A+ I D    + + N S   L       +   P
Sbjct: 72  MSDTKQIRRLTPSSSETLITLLETLPGALFIIDDAATIVYANVSAQTLTGATREDVCGKP 131

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
                          P  ++   ++  + +      T  +          H  +     G
Sbjct: 132 LWSG----------APHLVSTALYQAVLRARQTRKWTEVEYRSPVTQTWFHAQLLPTGVG 181

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN--PAFRSLWK 468
             +   EN T     +       +     ++ +S+ +AV  P+G +   N  P   SL +
Sbjct: 182 LAVLFQEN-TEPKRFQDALRQSEQKYLNLLESVSDRMAVLTPEGLVLEINQRPLADSLCQ 240

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            EE    P         T    Y+ +    L  AI  +   +    +  +       L+ 
Sbjct: 241 REEVVGKP------FIETPWWSYDPAVQQQLHTAIEQASRGKSVHFEARIHPQEGWYLDL 294

Query: 529 SIIPLPN-------AQTMLTFVNVTDSVRAERALT 556
           ++   P+          +    ++T   RAE  L 
Sbjct: 295 TVTMTPHLDADGHVEYLIYAGRDITARKRAEAELH 329


>gi|317479397|ref|ZP_07938531.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904471|gb|EFV26291.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 623

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/538 (20%), Positives = 213/538 (39%), Gaps = 34/538 (6%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+GN K Y I    +    +      S    + ++    + I   L V I ++++   
Sbjct: 102 TDENGNVKVYGIAETQDGPDMS------SASQALQERNRLLHNIYKYLPVGIELYNREGI 155

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSSE 386
           L   N    E++ +           D L   +      PE++  K  K EN    ++   
Sbjct: 156 LIDMNDKEQEMFHLKQ-------KEDLLGINIFENPIFPEEMKSKLRKHENADFTFRYDF 208

Query: 387 THKDTWHLPNGQT----LHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +  D ++    +T    L   VTS     +     + +  + T       K         
Sbjct: 209 SKIDNYYKTQKKTGTIDLVTKVTSLYDDNHNLTNYLLINADKTETTVAYNKIQEFESHFE 268

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              D+   G A +        +  + +++L +  E  LS      N      R       
Sbjct: 269 LIDDYAKVGYANYDLLNEQGYAQRSWYKNLGEKTETPLSEIIGTYNHLHPDDRTIMLDFL 328

Query: 497 WDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER 553
            ++   +      E + L   G+      +++    +P  N  + +    ++T   + E 
Sbjct: 329 QNVKRGLAHKLSREVRVLKEDGSFMWTHVNIIVERYMPEQNIIEIICINYDITQLKKTEA 388

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E   +AD +K++F+ ++S+E+R+PL  IIGF+ LL          ++ QY+  I
Sbjct: 389 MLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLL---HYVENEQEREQYISLI 445

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + ++ +LL L+ND+LDL+ ++AG ++L+       +L+ E        +    +++    
Sbjct: 446 NHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPA-GVKLFARY 504

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
               G    D  R+ QI +  +SNA+  + +G  + +    D      SV + G  IP D
Sbjct: 505 PAAPGQIEHDPMRIKQILNNFISNALKNTVQGH-IEVYYETDTDGIRISVSDTGCGIPPD 563

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F RF       Q  G GLGLSI +S +    G +++ S+    +T    +P +
Sbjct: 564 KLGMIFERFEKVDSFAQ--GAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELPCR 619


>gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 589

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/399 (23%), Positives = 167/399 (41%), Gaps = 36/399 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            + VT++   G +   F  L   +D   T            + H++EGV      G++ L
Sbjct: 213 RIEVTTSDEVGQLAQDFNYLAESLDATVTALFREKSKIESILAHMAEGVLAVDGQGQVIL 272

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +N A       +           +I          S   ++FA++  S +     L    
Sbjct: 273 ANTAISRTLAVKP---------EDIINRPLSELPFSGIPEVFASVTDSGEPRSAELDLN- 322

Query: 519 ELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                + +   + PL N        +    ++TD    E                +   V
Sbjct: 323 --GGKTCVLIHVAPLTNGAGKISGAVGVLQDITDIKNLEVW--------------RRDLV 366

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+PLT+I GF + +    +      Q  Y++ I   +  L  L+ ++LDLA +
Sbjct: 367 ANVSHELRTPLTSIRGFIEAILDGTISD-PEAQRHYLKVIHQETVRLTRLIRELLDLAQM 425

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG +      I +++L++ V   +  ++ ++ I +KV     L   +A+  R+ Q+ + 
Sbjct: 426 EAGKIVWELHPIEVSELVSRVLFKLGPQLEQHQISVKVDISQSLPLMLANEDRMEQVLTN 485

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           ++ NA+ +S  G TV +KA  DNG     V + G  IPE+    +++RF        R  
Sbjct: 486 LVENAIRYSPPGKTVTVKAGSDNGLVQIEVSDEGPGIPEEDLPYIWDRFHRVEKSRSRSL 545

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGL+IV+  +  HGG V + S     +T    IP+
Sbjct: 546 GGTGLGLAIVKQIVEAHGGKVGVHSQPGQGSTFFFSIPA 584



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 33/186 (17%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           ++ ++   F     ++D +    +  + +    IL ++   +   D    +   N +   
Sbjct: 221 EVGQLAQDFNYLAESLDAT-VTALFREKSKIESILAHMAEGVLAVDGQGQVILANTAISR 279

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
              +    +   P +               +L +    E   SV  S E       L  G
Sbjct: 280 TLAVKPEDIINRPLS---------------ELPFSGIPEVFASVTDSGEPRSAELDLNGG 324

Query: 398 QT---LHVIVTSNPRG---GTIWMFENLTVQVDLE-----------TKYNTLVKVQGETI 440
           +T   +HV   +N  G   G + + +++T   +LE            +  T +      I
Sbjct: 325 KTCVLIHVAPLTNGAGKISGAVGVLQDITDIKNLEVWRRDLVANVSHELRTPLTSIRGFI 384

Query: 441 DHLSEG 446
           + + +G
Sbjct: 385 EAILDG 390


>gi|144040|gb|AAA22970.1| BvgS protein [Bordetella pertussis]
          Length = 1238

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 162/387 (41%), Gaps = 12/387 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TE 470
            +++   +  +   E   N  ++     ID     + V   +GR+ L N A+   +  T 
Sbjct: 560 IVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTA 619

Query: 471 ENRLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +  L       N+      +R  +E     + A     F+D   +L G    +    + Y
Sbjct: 620 DAVLGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRFEDRDVTLHGRTRHVYQWTIPY 679

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +  ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  II
Sbjct: 680 GDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAII 739

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L           +QS  ++    S+  LL L+ DILD+A ++AG   L      L 
Sbjct: 740 GMLELALLRPTDQEPDRQS--IQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALR 797

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L     +       +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  
Sbjct: 798 VLPEGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV 857

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIV 761
           V+   AR +GD     FSV + G  I E   + +F  F       +     G GLGLSI 
Sbjct: 858 VLAVTARPDGDAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSIS 917

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              + L GG + + S+    TT++  +
Sbjct: 918 RRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 12/149 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           +  ++ +     + L++ +   +VL D     ++ RD+ G +L  N +Y      T   V
Sbjct: 563 LRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAV 622

Query: 233 FQKAIGESRKLFKEEIKKRM------ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
             K I E+  +    + + M        ++  E  F +   TL       Y+        
Sbjct: 623 LGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRFEDRDVTLHGRTRHVYQWTIPYGDS 682

Query: 287 -----GEAGIAIDVSKEITVNDQLTHTYE 310
                G  G  ID+++   +  +L    E
Sbjct: 683 LGELKGIIGGWIDITERAELLRELHDAKE 711


>gi|254416315|ref|ZP_05030069.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176997|gb|EDX72007.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1474

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/588 (19%), Positives = 195/588 (33%), Gaps = 97/588 (16%)

Query: 289  AGIAIDVSKEITVNDQLTHTYEILHNLTVAI----AIFDQN-RYLQFHNRSFVELWEIDL 343
             G   D+S        L    E    L   I     +   +   + + + ++ E+W    
Sbjct: 654  VGTHTDISDRKQAEAALLEREEQFRQLAENIREVFFLTTPDLSRMFYLSPAYEEVWGRSR 713

Query: 344  AFLATNP----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
              L   P     N    +  R A  L +QL  +   E  + + +   + +  W     +T
Sbjct: 714  ESLYDQPMTWLDNIHPYDRDRVAEALGKQLQGEQDFEQEYRILRPDGSERWVWV----RT 769

Query: 400  LHVIVTSNPRGGTIWMFENLTVQVDLETKYN------------TLVKVQGETIDH----- 442
              V            + E++T +   E +              TL   Q   +D      
Sbjct: 770  FRVFDDKGKMTRIAGIAEDITERKHSEAELRRQTLQRQLFAEITLKIRQSLQLDAILQTT 829

Query: 443  --------------------------LSEGVA----------VFGP-----------DGR 455
                                      ++E V           ++ P            GR
Sbjct: 830  VTEVRRILQVDRVVIYQLNDDGTGVIMTEAVVPGWTPIQGQEIYDPCFREGYLEQYRQGR 889

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            I+     +++  +     L     +R  A          + W L   I       R+   
Sbjct: 890  IRAIEDLYQADLEPCHIELLQPFGVR--ANLVVPILQRENLWGLL--IAHQCSGPRQWEM 945

Query: 516  GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
              +ELLS    +  I    +                   L +  +    A+  K+ F+ +
Sbjct: 946  FEIELLSQLADQVGIALAQSQLLEEQTRISQQLAEKNLHLEQARQEAETANHAKSEFLAN 1005

Query: 576  VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            +S+ELR+PL  I+G+  +LK        +KQ Q +  I      LL L+NDILDL+ ++A
Sbjct: 1006 MSHELRTPLNGILGYVQVLKREPHP--TAKQQQGLSIIQQCGEHLLTLLNDILDLSKIEA 1063

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694
              M L  S       L  + + +  +  E  I         L   V  D +RL Q+   +
Sbjct: 1064 RKMDLCLSEFQFPHFLEGIIEMVRIRADEKAIAFHYQPLSPLPKIVRGDEKRLRQVLINL 1123

Query: 695  LSNAMDFSSKGSTVILK---------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
            L NA+ F+ +GS +  K         A   +    F +++ G  I  +    +F  F   
Sbjct: 1124 LGNAIKFTDQGS-ITFKVGYTSAQAPATEASNTMRFQIEDTGIGIAAEQLNDIFLPFHQI 1182

Query: 745  NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPS 790
                 Q  G GLGL+I +  + L GG + + S+    +T      +P+
Sbjct: 1183 GDRNRQVEGTGLGLAISQRLVQLLGGELHVESNVGQGSTFYVDLELPA 1230



 Score = 64.6 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 66/440 (15%), Positives = 142/440 (32%), Gaps = 49/440 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + +E+ E     K L  +     +L       V   +  G I+  N + +      G   
Sbjct: 401 LLAEVVEQKQMEKALRKNDQRLSLLVQQTPLAVIEWNTDGHIVDWNPAAES---IFGYCR 457

Query: 234 QKAIGESRKLFKEEIKKRMISSSAL----EKNFCETVSTLEHGNNK-----SYKIVRVLN 284
            +A+G    L      +  I         +K    + +     + +      Y    + +
Sbjct: 458 DEALGHPSTLIVPPAAQAQIKQIKAKLWYDKQVARSCNQNITKDGRTIICEWYNTPLIDS 517

Query: 285 SF---GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ---------FHN 332
                G A +A+D+++       L  + E       A+AI   +  L          +++
Sbjct: 518 QGNLLGIASMALDITQRQETQTALRESEERF-----ALAIQANDSGLFDINFKTNTYYYS 572

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH---- 388
             F+ L           PS DEL+  +   ++   +++      +  S +K         
Sbjct: 573 PQFLHLIGYPED--RDTPSFDELMARVHPEDQSMVKISIDQLFISELSQWKLEFRMVHSN 630

Query: 389 -KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
               W L  G  L     +      +    +++ +   E       +   +  +++ E  
Sbjct: 631 GSTPWFLSRGLVLRDE--NGKVTRIVGTHTDISDRKQAEAALLEREEQFRQLAENIREVF 688

Query: 448 AVFGPD-GRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            +  PD  R+   +PA+  +W      L   P T + NI         E+ G  L     
Sbjct: 689 FLTTPDLSRMFYLSPAYEEVWGRSRESLYDQPMTWLDNIHPYDRDRVAEALGKQLQGE-- 746

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             F+ E + L+      S+  +      + + +  +T +        ER     +EA  +
Sbjct: 747 QDFEQEYRILR---PDGSERWVWVRTFRVFDDKGKMTRIAGIAEDITERK---HSEAELR 800

Query: 565 ADEIKNSFVQHVSYELRSPL 584
              ++      ++ ++R  L
Sbjct: 801 RQTLQRQLFAEITLKIRQSL 820



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 116/345 (33%), Gaps = 34/345 (9%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-KIVRVLNSFGEAGIAIDVSKEI 299
           ++L   + + R I +  L++ F E  + L+  N +   ++V                 E 
Sbjct: 367 QELCDRDTQSRHIVAH-LDQQFQERTAALKAANRQLLAEVVEQKQ------------MEK 413

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +         ++    +A+  ++ + ++   N +   ++         +PS   +    
Sbjct: 414 ALRKNDQRLSLLVQQTPLAVIEWNTDGHIVDWNPAAESIFGYCRDEALGHPSTLIVPPAA 473

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GT 412
           ++  K   Q+  K W +      K      +     +G+T+     + P         G 
Sbjct: 474 QAQIK---QIKAKLWYD------KQVARSCNQNITKDGRTIICEWYNTPLIDSQGNLLGI 524

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
             M  ++T + + +T      +     I     G+            +P F  L    E+
Sbjct: 525 ASMALDITQRQETQTALRESEERFALAIQANDSGLFDINFKTNTYYYSPQFLHLIGYPED 584

Query: 473 RLSP-GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYS 529
           R +P    +        +   +     LF + ++ +  E + +   G+        L   
Sbjct: 585 RDTPSFDELMARVHPEDQSMVKISIDQLFISELSQWKLEFRMVHSNGSTPWFLSRGLVLR 644

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE-IKNSFV 573
                  + + T  +++D  +AE AL E+ E  R+  E I+  F 
Sbjct: 645 DENGKVTRIVGTHTDISDRKQAEAALLEREEQFRQLAENIREVFF 689


>gi|16329648|ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652132|dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1462

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/638 (18%), Positives = 226/638 (35%), Gaps = 83/638 (13%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
             I  E+  +    K L    + F+++ D+   ++W  DQ   + + N S+ +        
Sbjct: 437  AIRFEITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDKKMTFVNQSWLE-------- 488

Query: 233  FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV---RVLNSFGEA 289
                      L +E     +      +K     V +   G+ + +++    R ++     
Sbjct: 489  -----FRGATLAEESGNGYLEGIHPDDKGHYLGVYSQAFGDRRRFELEYRYRRVDQQYRW 543

Query: 290  GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
             + + V + +     + +    L        I D+        ++   L +     L   
Sbjct: 544  IVNVGVPRYLEDGKFMGYVGSCLD-------ITDRK-------QAQDILQKKLNQILLMR 589

Query: 350  PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
              + E+   L+          ++T    + +V+  S      +      TL V V +   
Sbjct: 590  KISQEIRRSLQPTLI------FQTAARQVGNVFAVSRCLIHNYSEA--TTLQVPVVAEYL 641

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            GG       L  ++ +E  Y+  +      +       AV   D          + L  T
Sbjct: 642  GGQFTSL--LAGEIAVEQAYDPTIIQGDRAM-------AVVDLD----------QDLNST 682

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                      +++  A  + Y  +++G           D +R      +ELL     +  
Sbjct: 683  HTKAFYQRFQVKSFLAVRTSYQGKANGIIALHQ----CDRQRVWTADEIELLEAIAEQMG 738

Query: 530  IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            I     A          +  +    L +   A   A+  K  F+  +S+E+R+P+  +IG
Sbjct: 739  IALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIG 798

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             T+LL  +    LN +Q  YV+ I  S   LL ++NDILD + ++A  + L      L  
Sbjct: 799  MTELLIMT---DLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLETQAFELRP 855

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+  V +         ++ +    D +  +  + D+ RL QI S ++ NA+ F+ KG  V
Sbjct: 856  LIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKFTEKGEVV 915

Query: 709  ----------------ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
                            IL     +    F++++ G  IP D    +F  F        R 
Sbjct: 916  LTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRK 975

Query: 752  -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGL I +    + GG ++++S     +     I
Sbjct: 976  YGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCI 1013



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 84/292 (28%), Gaps = 37/292 (12%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS----------- 351
            +L      L    + +AI D    + + N  FVE+       L  N             
Sbjct: 329 QELAVQKTALDEAAI-VAITDTEGVITYVNDKFVEVSGYSREELIGNTHRLVSSGYHSPE 387

Query: 352 -NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              +  + +R+          K W   I +  K+     +T+ + +     +    NP  
Sbjct: 388 FFQQFWQTIRAG---------KVWHGQINNRAKAG----NTYWVDSTVVPFLDDNGNPYQ 434

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
                FE +T     E              D     + V   D ++   N ++       
Sbjct: 435 YLAIRFE-ITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDKKMTFVNQSWLEFRGAT 493

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYS 529
               S   ++  I      +Y                +   R+  Q    +++  V  Y 
Sbjct: 494 LAEESGNGYLEGIHPDDKGHYLGVYSQAFGDRRRFELEYRYRRVDQQYRWIVNVGVPRY- 552

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              L + + M    +  D    ++A     + L +   ++      +S E+R
Sbjct: 553 ---LEDGKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRK-----ISQEIR 596


>gi|124265292|ref|YP_001019296.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258067|gb|ABM93061.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 938

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 123/693 (17%), Positives = 230/693 (33%), Gaps = 65/693 (9%)

Query: 149 NDCAIKIEGRVSGSCAFLRILSLD---GIYSELAETTLKCKKLSNHISVFK--------- 196
               + I+G   G+     +       G    LA+      +L       +         
Sbjct: 113 AGQPLAIDGLAVGTLCVFDLQPRTLGAGEREALAQLGCAAVELLQSRQGLREASQLRERL 172

Query: 197 -VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI-- 253
                +    +W  D      W + +++  T  +            +L   +   R+   
Sbjct: 173 FDFARAGGDWMWESDARHRYRWLSDAFQPITGIDPRRQLGEPITDAQLLDADGSPRVPAQ 232

Query: 254 --SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--------GIAIDVSKEITVND 303
              +    +     V T +H       + R      +A        G   DV+  +    
Sbjct: 233 YYRALLDRQEPFARVLTAKHTPRGLLYLSRSAVPVFDAAGRFEGYRGTVRDVTSTLAAAS 292

Query: 304 QLTHTYEILHNLTVAI--AIF------DQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +       L  L   +   +F      D      F +     +  +  A L         
Sbjct: 293 EARRGEVTLRELAAQVPGMLFTFEEHPDGRAGYPFVSDGAERVLGMAAATLQA--DALTF 350

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGG 411
              +   +  P           +  +      H     LP+G      + + P     GG
Sbjct: 351 FRHVHPPDLAPLGKALAEGAARLTRLE-----HSFRMTLPDGSLRWFEMRAAPTRLGDGG 405

Query: 412 TIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWK 468
           T+W     ++T +  +E       +      D    G+A F   DG + L   A      
Sbjct: 406 TLWHGFTADVTARKAIEEALQAHEERWQIAADAARIGIAEFVLADGLVNLDRRA------ 459

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDS 524
              N      H R          + +D   + A I  +   ER   +G   +     S  
Sbjct: 460 -CINHGLSYPHGRVTLDDWMAQIDPADRDAVMAGIGEALAGER-PFEGRYRIRQPDGSVR 517

Query: 525 VLEYSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            LE+ +    +     T            +    L+   +   +A   K+ F+  VS+EL
Sbjct: 518 WLEFVVRATRDEAGAPTGVIGTCRDVHEQQLADELSRGMQEAERASRAKSEFLSRVSHEL 577

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GFT L+   +   L + Q+Q +  +  +   LLNL+ND+L+++ +++  + +
Sbjct: 578 RTPLNGILGFTQLMALDEDHPLAAPQAQRLASVQRAGNRLLNLINDVLEISRIESAEVAV 637

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               + L+  L+     + +     +I I+      L     D + L Q+   +LSNA+ 
Sbjct: 638 RTLAVDLDAALHASLSLVQSLARGRSITIEPTPPSGL-WVSGDERALEQVLVNLLSNAIK 696

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLS 759
           +S + S V+L   R +G    +V++ G  +  +    +F  F    A R +  G GLGL 
Sbjct: 697 YSGEQSPVVLNLQRSDGTVKIAVRDRGVGLTAEQQARLFQPFDRLGAERRRIEGSGLGLV 756

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I        GG + + S     +T   ++P  E
Sbjct: 757 IARQLAEAMGGRIDVVSVPGAGSTFTLQLPEAE 789


>gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 877

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 103/516 (19%), Positives = 198/516 (38%), Gaps = 27/516 (5%)

Query: 288 EAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             G+A D+S+     ++L         +L N   A    DQ+  + + N+SF  +     
Sbjct: 118 VVGVARDISEVRRYQEELKLSEMRWKAVLDNAGEAFLTVDQSGNVTYVNKSFESMLGYRR 177

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             +        L   +    +      W          Y+      D   +P      VI
Sbjct: 178 DQIEGR----SLWTLVPDDQRQVLDYQWSMRHVKWQRRYEIDLLRSDGSRMP----ARVI 229

Query: 404 VTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            T     G          ++LT    ++ +    ++     +D +   V      GR + 
Sbjct: 230 ATVVKDLGEDHYLHFGFIDDLTQIRRIDREQKDRLRFLRTLLDTIPSPVFYKDSRGRYQG 289

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N AF+ +++                       ++ D      A+   F      +    
Sbjct: 290 FNRAFQEVFQAIGPMGEFDMSYLPDDFVARDVNSDLDLLRNPGAMCFHFKFGEGDVSRHF 349

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +   +  ++          +     +T+  R E  L E  E    +   K +FV H+S+
Sbjct: 350 VVHKATFFDHVGR---VGGFVGVMTEITEQKRMEAELREAKERAEASSRAKMAFVSHISH 406

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  ++G +++L  S     + +  + +E I  +S  L  ++ DILDLA V+AG +
Sbjct: 407 EIRTPMNAVVGLSEMLLDSC---EDPEIREDLELIHQASMSLTEILGDILDLAAVEAGKL 463

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSN 697
           +L  S+  + DL   V   +  +     +  +  + DG  G FV D+ R+ Q+   +LSN
Sbjct: 464 RLEESSFSMEDLCAPVFSLMGAEAKRKGLEFRGKVEDGASGHFVGDQVRIRQLLWNLLSN 523

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVG 755
           A+ F+  GS V  + +   G  +F V + G  I E+    +F+ F         +  G G
Sbjct: 524 AIKFTPSGS-VSARISASEGGVLFEVSDTGVGIEEEQLDRIFDYFERGEELLTRRIPGTG 582

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL++ +  ++L GG + + S     +  +  +P +
Sbjct: 583 LGLALCKKLVSLMGGAIRVRSRRGEGSCFSIWLPLR 618



 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 66/214 (30%), Gaps = 18/214 (8%)

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGS 162
             +P     +L +  W   H   +     + LR +G              I    +  G 
Sbjct: 187 TLVPDDQRQVLDY-QWSMRHVKWQRRYEIDLLRSDGSR-------MPARVIATVVKDLGE 238

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
             +L      G   +L +     ++  + +   + L D++   V+++D  G     N ++
Sbjct: 239 DHYLHF----GFIDDLTQIRRIDREQKDRLRFLRTLLDTIPSPVFYKDSRGRYQGFNRAF 294

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           ++  +  G + +  +      F        +         C      E   ++ + + + 
Sbjct: 295 QEVFQAIGPMGEFDMSYLPDDFVARDVNSDLDLLRNPGAMCFHFKFGEGDVSRHFVVHKA 354

Query: 283 LNSFGEAGIAI------DVSKEITVNDQLTHTYE 310
                   +        +++++  +  +L    E
Sbjct: 355 TFFDHVGRVGGFVGVMTEITEQKRMEAELREAKE 388


>gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 1205

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 157/394 (39%), Gaps = 26/394 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL------ 474
           V+   E       ++    +D     +     DG I+  N    SL       +      
Sbjct: 395 VRKRAEAALLVANRLNQAILDGTRYSIISTDLDGVIQTFNSGAESLLGYRAAEMVGIKTP 454

Query: 475 SPGTHIRNIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                 R +    +    E       G++ F A       +        +  +   +  S
Sbjct: 455 EVIHDAREVVMRAAALTAELGVPVPAGFETFVAKARIRVPDEGEWTYIRKDGTRLPVLLS 514

Query: 530 IIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +  L NA+  LT       ++T+  R E  L    E    A+  K  F+  +S+E+R+P+
Sbjct: 515 VTGLTNAEGALTGFLGIAADITERRRFENELRMAKEQAESANRAKGEFLATMSHEIRTPM 574

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG + LL  +K   L S Q   V+ I  S   L++++ DILD + ++A  + L   T
Sbjct: 575 NGIIGMSGLLLETK---LESSQRDMVDAIRTSGEALMDIIEDILDFSKIEARRLDLVEET 631

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
             L+ +++ V   +  K+    + + VI D  +  S   D  RL QI   ++ NA  F+ 
Sbjct: 632 FSLDAVIDGVVDLLNHKIQSKGLTMGVILDPDVPLSMRGDAGRLRQILFNLMGNASKFTD 691

Query: 704 KGST-VILKAARD---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           +G   + +  AR    N    F+V + G  +     + +F  F        RR  G GLG
Sbjct: 692 EGEVNLFISVARGPGGNNMLEFTVADTGIGMTPQQIERLFQPFSQVDSSSTRRFGGTGLG 751

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L I +  + + GG + + S+    +    R+P++
Sbjct: 752 LVISKRLVEMMGGAIHVESTPGKGSRFFFRLPAR 785



 Score = 37.2 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 49/147 (33%), Gaps = 25/147 (17%)

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEI---------DLAFLATNPSNDELLEFLRSAN 363
                 + + D+   + + N  F ++              +FL    ++   ++ +R   
Sbjct: 120 DRTINGVVMTDRAGRILWINHRFEKITGWTLDEVRGLSPGSFLQGPETDPATVDLMREKI 179

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQ 422
           +  +      +   + +  ++ E +           LH+ V       G +  F  +   
Sbjct: 180 RTGQP-----FTTQVLNYRRNGERY----------WLHLDVQPLRDPSGEVTSFLAIEND 224

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV 449
           +    ++   + VQ E    L+E +++
Sbjct: 225 ISQSRRHEQRIAVQLEVSKILAEAISI 251


>gi|160888865|ref|ZP_02069868.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
 gi|156861764|gb|EDO55195.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
          Length = 623

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/538 (20%), Positives = 214/538 (39%), Gaps = 34/538 (6%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+GN K Y I    +    +      S    + ++    + I   L V I ++++   
Sbjct: 102 TDENGNVKVYGIAETQDGPDMS------SASQALQERNRLLHNIYKYLPVGIELYNREGI 155

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSSE 386
           L   N    E++ +           D L   +      PE++  K  K EN    ++   
Sbjct: 156 LIDMNDKEQEMFHLKQ-------KEDLLGINIFENPIFPEEMKSKLRKHENADFTFRYDF 208

Query: 387 THKDTWHLPNGQT----LHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           +  D ++    +T    L   VTS     +     + +  + T       K         
Sbjct: 209 SKIDNYYKTQKKTGTIDLVTKVTSLYDDNHNLTNYLLINADKTETTVAYNKIQEFESHFE 268

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              D+   G A +        +  + +++L +  E  LS      N     +R       
Sbjct: 269 LIDDYAKVGYANYDLLNEQGYAQRSWYKNLGEKTETPLSEIIGTYNHLHPDNRTIMLDFL 328

Query: 497 WDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER 553
            ++   +      E + L   G+      +++    +P  N  + +    ++T   + E 
Sbjct: 329 QNVKRGLAHKLSREVRVLKEDGSFMWTHVNIIVERYMPEQNIIEIICINYDITQLKKTEA 388

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E   +AD +K++F+ ++S+E+R+PL  IIGF+ LL          ++ QY+  I
Sbjct: 389 MLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLL---HYVENEQEREQYISLI 445

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + ++ +LL L+ND+LDL+ ++AG ++L+       +L+ E        +    +++    
Sbjct: 446 NHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPA-GVKLFARY 504

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
               G    D  R+ QI +  +SNA+  + +G  + +    D      SV + G  IP D
Sbjct: 505 PAAPGQIEHDPMRIKQILNNFISNALKNTVQGH-IEVYYETDTDGIRISVSDTGCGIPPD 563

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F RF       Q  G GLGLSI +S +    G +++ S+    +T    +P +
Sbjct: 564 KLGMIFERFEKVDSFAQ--GAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELPCR 619


>gi|261250888|ref|ZP_05943462.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891]
 gi|260937761|gb|EEX93749.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891]
          Length = 1053

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 30/384 (7%)

Query: 422 QVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           +++L T+       +    I+     VA+     RI L N      +    + +      
Sbjct: 150 EIELRTRDLQANEALSRTIIEGAPSSVAIIDSQQRIILWNKTAEETYGYSFDEVEGQNLC 209

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +         +    +L      S DD+ K   G  E+ +    +  +IP+    T+ 
Sbjct: 210 DLLQIDLPEELRDVLSGEL------SIDDQIKVSGGFFEVET-YTSQGHMIPIDLGITIF 262

Query: 541 TFVNVTD----------SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            F                   E  L +      +A E+K+ F+ ++S+E+R+P+  IIG 
Sbjct: 263 LFDEQCRAAMFLRDVTSRKIVEDELNKARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGM 322

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + L   +    L  KQ  Y+  I  S+++LL ++NDILD + ++AG + + +    L+D+
Sbjct: 323 SHLALKT---DLTPKQHDYILKIHNSASLLLGIINDILDFSKIEAGKLSIEHIEFHLDDV 379

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ V      K  E  + +    D  +   +  D  RL QI   +++NA+ F+ +G  + 
Sbjct: 380 LHNVSMVTGQKAFEKGLELIFQIDRNVPKVLFGDPLRLGQIIINLVNNAVKFTDQGE-IT 438

Query: 710 LKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           +       + +  +  F+V++ G  +  +  + +F+ F        RR  G GLGLSI  
Sbjct: 439 VHVTKKPYSEEKIELNFTVQDTGIGMSPEQSEKLFSAFTQADGSTTRRYGGTGLGLSICR 498

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             + L GG + + S+    +    
Sbjct: 499 RLVELMGGDIHVESAVGKGSQFKF 522


>gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
 gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
          Length = 1186

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 151/797 (18%), Positives = 292/797 (36%), Gaps = 90/797 (11%)

Query: 53   KKVNETYSFLSEICDQLSKYHSLLTENNCLTIV-----------WDGKDETPEIIGQLHQ 101
            +++ + YS    +  +  +   LL++ N    +           W+ ++         ++
Sbjct: 272  RELLKLYSRQLTLLIESRENKKLLSQANQRLKLAMEAAEHTFWEWNLENNKAYFSPNFYK 331

Query: 102  RIDIPQTDTDL---LSFENWLKFHHYIKLSKATEKLRKEGQSF--DLVAETQNDCA--IK 154
             +        +    +F+  +      +  K  EK  +E + F  +L  + +N     ++
Sbjct: 332  MLGYKDDQLQIDIDSAFKI-IHPEDKKETLKIIEKAVEELEPFAEELRVKCKNGGWKWVE 390

Query: 155  IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            + G+        +   + GI  ++ +   + + L      F  L +     +   D+ G+
Sbjct: 391  VRGKSYQLDPRGKAKRILGINIDIDQKKKQEEALKKSREKFSRLSEEAPIGILSADRNGN 450

Query: 215  ILWANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMIS--SSALEKNFCETVSTLEH 271
            I +AN    +   + G++  K I      L  E    + I    +  E    E   + + 
Sbjct: 451  IDYANSKMIEILGSPGLIETKKINLLKFPLLIERGFSQKIEKCMTENEPATYELNYSTKW 510

Query: 272  GNNKSYKIVRVLNSF-----GEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIF 322
            G N   ++            G   I  +++++  + D+L     +      ++   I I 
Sbjct: 511  GKNIWLRVHLTPRHEDDKVTGVQLIVDEITEKKEIQDRLKLSERNFRTFFESMDDMIFIS 570

Query: 323  DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            D    +   N   +E        LA     D    +++   K  +QL        I S+ 
Sbjct: 571  DYRGEISHTNHLTIEKLGYSKEELAAMSFADI---YIQKEGKEIQQLLADMAAGKIMSLE 627

Query: 383  KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                  KD   +P+   +      N +     + ++++ Q +   K+N L        ++
Sbjct: 628  S-----KDGRLIPSETRIWF-GKWNGKEVIFAIAKDVSRQQEALQKFNKL-------FNN 674

Query: 443  LSEGVAV-FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
                + V    D      N +F S           G     I     R            
Sbjct: 675  NPALMTVNTLVDFSFIEVNSSFLS---------KMGYSKEEIIGRNCRELELFADKAKRR 725

Query: 502  AIITSFDDERKSLQGTLELLS--DSVLEY----SIIPLPNAQTMLT-FVNVTDSVRAERA 554
             II     E       L+LL+  D VLE      II     Q +LT   ++T   R E  
Sbjct: 726  KIIKKIIKEGSVNNIELKLLNKRDEVLELLFSGEIIESQGQQFILTVMTDITVQKRVEEE 785

Query: 555  LTEKNEALR--------------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            L + N+ L+              KA+E+K+ F+ ++S+E+R+PL  I+G+T+LL      
Sbjct: 786  LVKTNQKLQESMDKANKMAVKAEKANELKSQFLANMSHEIRTPLNIIMGYTELLAKDL-- 843

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                   +Y++ I ++   LL+ VNDILD++ ++AGI+++NY  I L  LL  +    A 
Sbjct: 844  -EEDNYKRYIKSIRSAGDSLLDQVNDILDMSKIEAGIIEINYEYIDLAALLENITAIFAD 902

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-- 717
            K+    +  ++  D        D  R  QI   +L NA+ F+  G   + +     +G  
Sbjct: 903  KVKAKGLDFQLKMDNLPPLVKMDEFRFRQIMINLLDNAVKFTKSGHIFIGVYCRPVSGKG 962

Query: 718  ----DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
                     V++ G  I  +  + +F  F         +  G GLGLSI    +++  G 
Sbjct: 963  NNNIKLRIIVQDTGIGIKAEKQEEIFKAFSQENAESTREFGGTGLGLSITRRLVDMMDGQ 1022

Query: 772  VSISSSDEGVTTINCRI 788
            +S+ S+    +      
Sbjct: 1023 ISLQSTAGKGSVFKIEF 1039


>gi|187778664|ref|ZP_02995137.1| hypothetical protein CLOSPO_02259 [Clostridium sporogenes ATCC
           15579]
 gi|187772289|gb|EDU36091.1| hypothetical protein CLOSPO_02259 [Clostridium sporogenes ATCC
           15579]
          Length = 702

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/507 (19%), Positives = 210/507 (41%), Gaps = 17/507 (3%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA-FLATNPS 351
           ID+ ++  + D + +   +++N++  I +FD++  L   N++  ++  + +   L     
Sbjct: 170 IDILRKKEL-DYIKYLNNVINNVSEGILVFDKHSKLILWNKAIEQIGGMKIKKILGIKEI 228

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG- 410
            +E   ++   +K    + +K  K N        +         + +  ++   SNP   
Sbjct: 229 INEYDIYILDNHK---NMKYKIKKVNPDYNSSVKDLLLKLVKKDSNEIKYIEYNSNPIID 285

Query: 411 ------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAF 463
                  TI   +N+T  ++ +       +     +D +   +AV   PD   KL N  +
Sbjct: 286 ENNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYKLVNERY 345

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L +    +   G  + N      R     +  ++   +      E         L S 
Sbjct: 346 EELVERLYTKKIKGNLLGNTVEDVFRKEEFKEQLEVLQKMKEGTIKEYTFSPEKFVLQSG 405

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
               + +  + +       V++  S   E    + N  L K +++K+ F   +S+ELR+P
Sbjct: 406 EERFFKVKYIYHETKNKKRVHIHGSDVTEE--FKNNLELEKVNKLKDEFFTIISHELRTP 463

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT I     L        +N    + ++ I+ ++  LL L+N+ILD++  +AG + LN  
Sbjct: 464 LTIIYSSLQLAYDIYSKDINPSIDKILKRINQNTARLLKLINNILDISKAEAGFLALNNE 523

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +      +  SI    +  NI +   +  +      D+ +  +I   +LSNA+ F+ 
Sbjct: 524 YFDVVWETENIVNSITNYANSKNINLIFDTTKEEEKVWIDKDKYERILLNLLSNAVKFTP 583

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
           +  ++ +       +F   VK+ G+ IP++    +FNRF    ++      G G+GLS+V
Sbjct: 584 ENKSIYVTLKIYKNNFKLIVKDEGAGIPKEKIDCIFNRFAQVNSSLSRNAEGTGIGLSLV 643

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++L GG + ++S+    TT   +I
Sbjct: 644 KKIVDLMGGEIKVNSTLGKGTTFTVKI 670



 Score = 41.1 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 418 NLTVQVD--------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           N++ Q+         L  K    +K     I+++SEG+ VF    ++ L N A   +   
Sbjct: 158 NISEQIKNKSEIIDILRKKELDYIKYLNNVINNVSEGILVFDKHSKLILWNKAIEQIGGM 217

Query: 470 EENRLSPGTHIRN 482
           +  ++     I N
Sbjct: 218 KIKKILGIKEIIN 230


>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
 gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
          Length = 1040

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 158/385 (41%), Gaps = 30/385 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
               K        G  ++ L + + V   +G       A  +       +   G  ++ I
Sbjct: 363 RTTLKLKESEARNGAMLNALPDMLFVLDKEGVCLDF-HARNNNEPHPPAKQFIGKSLKEI 421

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                    +    ++  +      + +    G       S  E  ++PL   +T+    
Sbjct: 422 FPEAHSSALQHLIHEVSESGAPKIHEYQMKRSG-----KTSHYEIRVVPLGTDKTLNIVR 476

Query: 544 NVTDSVRAERALTEKN--------------EALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           N+TD    E  L   N              E  ++A + K+ F+ ++S+E+R+P+  +IG
Sbjct: 477 NMTDQKETENKLLRTNRKLENASRKAKKLAEQAQEASKAKSEFLANISHEIRTPMNGVIG 536

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            T LL  +    L  +Q +Y   I++S+  LL+L+NDILD++ ++AG + L      L +
Sbjct: 537 MTGLLLET---DLTPQQHRYAGTIASSAQSLLDLINDILDVSKIEAGKLTLEILDFDLQE 593

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST- 707
           L+++   S A +  + N+      +  + +    D  RL QI   I  NA+ F+SKG   
Sbjct: 594 LMDDFAASFAIQAEQKNLEFLCSIEPGIPTRLTGDPGRLRQILMNIAGNAVKFTSKGEIA 653

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
           + +    D  D     F +++ G  I ++   ++F +F     +   Q  G GLGLSI +
Sbjct: 654 IYVTLDSDCDDQVVLRFCIRDTGIGIAKEKIDTLFEKFTQIDASATRQYGGTGLGLSIAK 713

Query: 763 SFINLHGGHVSISSSDEGVTTINCR 787
             + L  G + + S+    +     
Sbjct: 714 DLVELMQGSIGVESTVNQGSLFWFT 738


>gi|330975736|gb|EGH75802.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 576

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/523 (22%), Positives = 210/523 (40%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+  
Sbjct: 342 RDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +    +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L    
Sbjct: 402 LLIVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRL 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VPASQAGLIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1364

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/621 (16%), Positives = 215/621 (34%), Gaps = 79/621 (12%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y+  T       +  +     ++          ++    +  ++   L  G         
Sbjct: 269 YRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAGFVASLNQSSPWLIGG--LVMAASV 326

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +  +      +  + +E  +  Q+     ++ + + AI     +  +   N +   ++  
Sbjct: 327 LFAALLVLYFSNGLRREEVLRKQME-LAALVSHSSEAIVAQTPDGRITHWNPAAEAMFGY 385

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                    + DE ++   +    P+            ++  ++   +   H  +G  +H
Sbjct: 386 ---------TADEAIDQDLTTLLSPQPYAMSEVDHADAALAGNASAAQTMRHR-DGHQVH 435

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVK------------------VQ 436
           V+ +  P         G    F +++ +V    +   L                    +Q
Sbjct: 436 VLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEHQVAERTSELVKFSVLQ 495

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYY 491
              + H    +      G + L NPA   L       +                  +   
Sbjct: 496 RAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEQEELQERAHML 555

Query: 492 NESDGWDLFAAIIT------------------SFDDERKSLQGTLELLSDSVLEYSIIPL 533
            E  G  +   +                    S D  R  +  TL  L D   +      
Sbjct: 556 AEQTGTQVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVI---- 611

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +   V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   L
Sbjct: 612 ---GYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYL 668

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ S+   L       V  I  S+  LL ++NDILD + ++AG + L  +   LN L + 
Sbjct: 669 LQRSE---LPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725

Query: 654 VKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   + + +    + + V          + D  R+ Q+   ++ NA+ F+ +G  V+   
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVR 785

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
              +GD      +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    +
Sbjct: 786 RFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLV 845

Query: 766 NLHGGHVSISSSDEGVTTINC 786
            L GG + + S     +    
Sbjct: 846 ELMGGELEVESVPGRGSEFYF 866


>gi|332382337|gb|AEE67184.1| virulence sensor protein [Bordetella pertussis CS]
          Length = 1238

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 162/387 (41%), Gaps = 12/387 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TE 470
            +++   +  +   E   N  ++     ID     + V   +GR+ L N A+   +  T 
Sbjct: 560 IVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTA 619

Query: 471 ENRLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +  L       N+      +R  +E     + A     F+D   +L G    +    + Y
Sbjct: 620 DAVLGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRFEDRDVTLHGRTRHVYQWTIPY 679

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +  ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  II
Sbjct: 680 GDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAII 739

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L           +QS  ++    S+  LL L+ DILD+A ++AG   L      L 
Sbjct: 740 GMLELALLRPTDQEPDRQS--IQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALR 797

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L     +       +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  
Sbjct: 798 VLPEGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV 857

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIV 761
           V+   AR +GD     FSV + G  I E   + +F  F       +     G GLGLSI 
Sbjct: 858 VLAVTARPDGDAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSIS 917

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              + L GG + + S+    TT++  +
Sbjct: 918 RRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 12/149 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           +  ++ +     + L++ +   +VL D     ++ RD+ G +L  N +Y      T   V
Sbjct: 563 LRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAV 622

Query: 233 FQKAIGESRKLFKEEIKKRM------ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
             K I E+  +    + + M        ++  E  F +   TL       Y+        
Sbjct: 623 LGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRFEDRDVTLHGRTRHVYQWTIPYGDS 682

Query: 287 -----GEAGIAIDVSKEITVNDQLTHTYE 310
                G  G  ID+++   +  +L    E
Sbjct: 683 LGELKGIIGGWIDITERAELLRELHDAKE 711


>gi|220908294|ref|YP_002483605.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864905|gb|ACL45244.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 733

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 4/243 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL +   +   A   K+ F+  +++ELR+PLT +IG +  L    LG LN KQ  Y++ 
Sbjct: 344 QALYDALLSTHSAHRAKSDFLATINHELRTPLTCVIGMSATLLRWSLGPLNDKQRSYLKT 403

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L+NDILDL+ V+AG   L+ S   LN L  +  +    K  E  + +K+ 
Sbjct: 404 IHDSGEHLLELINDILDLSQVEAGKAVLSLSEFSLNQLCRQALRVFREKAQEAEVELKLE 463

Query: 673 --SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                +   F AD++R+ QI   +LSNA+ F+  G  V L++  +NG  +F V++ G  I
Sbjct: 464 SLIPSEFERFCADQRRVRQILFNLLSNAIKFTPAGGRVTLRSWVENGKALFQVEDTGIGI 523

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  +F +F            GVGLGL++ +  + LH G + + S++   +     +
Sbjct: 524 SLSQQPLLFQKFQQLDTSYTRSYEGVGLGLALTKQLVELHRGRIEVESTEGIGSIFTVEL 583

Query: 789 PSK 791
           P++
Sbjct: 584 PAQ 586


>gi|291570267|dbj|BAI92539.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 623

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 134/292 (45%), Gaps = 11/292 (3%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           + E+K +    + LS ++ +  +      Q       V +  +A   L +   A + A+ 
Sbjct: 189 ETEQKFISKITQHLSIAIYQAQLYAQVQQQKQTLERRVKERTQA---LHDALLAAQCANR 245

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN------SKQSQYVEYISASSTILL 621
            K+ F+  +S+ELR+PLT++IG +  L        N       KQ  Y++ I  S   LL
Sbjct: 246 AKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPENFPALPLEKQKHYLQTIHDSGENLL 305

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILDL+ V++G   L  S   L  +  +   ++     E  + + +        F 
Sbjct: 306 ALINDILDLSQVESGKTVLKISQFSLGKMAQQCLHTLRDFAKEKGVNLYLKMKVDQDLFR 365

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +R+ QI   +LSNA+ F+ KG  V L  +R +   IF VK+ G  I ++    +F +
Sbjct: 366 ADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSRKDKMAIFQVKDTGIGISKEQQSLLFEK 425

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F       R Q  G GLGL++ +  + LHGG +   S     T     IP +
Sbjct: 426 FQQLDSPYRRQYGGTGLGLALTKQLVELHGGSIQFESVIGLGTKFTVYIPIQ 477


>gi|83955168|ref|ZP_00963824.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840497|gb|EAP79670.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 550

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/515 (20%), Positives = 204/515 (39%), Gaps = 65/515 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              TV+D +     +L  +   + + D +  L   N   +E        L   P      
Sbjct: 64  ARATVDDSVAQQLRVLK-MHTMVNVVDTDNLLVEVNDLLLEATGYTRQELIGKPV----- 117

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNPR----- 409
                   +    + +T    I  + +  ++   + T    +G T     T  P      
Sbjct: 118 -------AMLYSKDNRTTATEIRDLLRQGKSWQGETTLRNRDGSTCVTQTTVTPLLDANG 170

Query: 410 --GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSL 466
              G+I    ++T    L  + +T +     T+  L + + +   D   ++  N A ++ 
Sbjct: 171 RWIGSISARTDITSTTKLIARRDTAM-----TLHELRDDIWIVSEDNLELRYMNLAAKAR 225

Query: 467 WKTEENR--------LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +              ++      ++   C R  +  D +  F+A I+       + +G++
Sbjct: 226 FGWSTRPKNGQTVRDMAAERGCEDVLDACLRMMDIGDTYMTFSATISG-----TNFEGSI 280

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + L+   +        + + ++   +VT+ +  ER              ++  F+  VS+
Sbjct: 281 KWLNKGTV--------DGRLLIMLHDVTERLEQER--------------LQADFISMVSH 318

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELRSPLT+I G   LL +   G L  K    +E    ++  L+ ++NDILD+  + +G +
Sbjct: 319 ELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAHRNADRLVLIINDILDMEKISSGRL 378

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                T  L++L+ E  ++ AT      ++IK            D  R++Q+ + ++SNA
Sbjct: 379 DFELETADLSELVAESLRANATAHQRFGLQIKCHGVDTPTYIETDANRIIQVLTNLMSNA 438

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGL 756
             FS  G TV +   +   +   SV++ G  I  +    +F RF    N+ R  + G GL
Sbjct: 439 AKFSKPGGTVEISVEKTPENVCVSVRDEGMGIAPEDQHKIFQRFADMANSDRATKGGTGL 498

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI ++ +   GG +   S +   TT    +P K
Sbjct: 499 GLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLPVK 533


>gi|300867853|ref|ZP_07112495.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334184|emb|CBN57671.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1145

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 171/408 (41%), Gaps = 38/408 (9%)

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT--EENRLSPG 477
            + ++  ET   +  +      ++ +EG+     +G    +NPA   ++     E      
Sbjct: 734  SDRLRTETALRSAEEKYRSIFENTAEGLFQTSLEGHFLSANPALARIYGYSSPEELRELV 793

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            + I++         +E     +    ++ F+ +     G++  +S++V            
Sbjct: 794  SDIKSQVYVDPHRRDELTRLIIQRGAVSGFESQVYRADGSIIWISENVRSVLDRDGNVLY 853

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
               +  +++D    E  L    EA   A   K+SF+ ++S+ELR+PL  IIG++++L+  
Sbjct: 854  YEGSIEDISDRKHFESVLQLAKEAAEAASMAKSSFLANMSHELRTPLNAIIGYSEMLQEE 913

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                   + +  +  I  S   LL+L+NDILD++ ++AG M L   T  ++DL+++V  +
Sbjct: 914  TEDLGYQELTPDLHKIHISGKHLLSLINDILDISKIEAGRMDLYLETFSVDDLIDDVAAT 973

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
                  +N   ++VI +  + +  AD  ++ QI   +LSNA  F+  G  + L  +R+  
Sbjct: 974  AKPLAEKNGNILEVIKNSDIDTMHADITKVRQILLNLLSNAAKFTHNG-KITLAVSREIA 1032

Query: 716  -------------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
                                               IF+  + G  +  +  + +F  F  
Sbjct: 1033 AIDAEESMTTAEVIIDNQSNINNNNSSAISNFECLIFNCTDTGIGMTSEQLQQIFQPFTQ 1092

Query: 745  NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  R   G GLGL+I   F  + GG +++ S     +T + ++P+
Sbjct: 1093 GDASTTRKYGGTGLGLAISHCFCQMMGGKIAVESQIGIGSTFSVKLPA 1140



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 12/156 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           ++   K  +           +SE + V   +GR     P  ++L             + +
Sbjct: 436 IERTAKLQSAEAELRALFAGMSELILVLDRNGRYLKIAPTNQALTY---------KPMED 486

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNAQTM 539
           +              D F   I +  D ++++     L     +     SI PL     +
Sbjct: 487 LVDKTIGEVFPPALADTFVGYIQNSLDSQQTVNVEYNLTIGDREVWFAASISPLSQESVI 546

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
               +++D   AE A  +  + L + +       ++
Sbjct: 547 WVARDISDRKLAESARQQTEKQLLRQNSALVELARN 582


>gi|298485838|ref|ZP_07003916.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159662|gb|EFI00705.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 576

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/523 (22%), Positives = 209/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTARTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G++   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+  
Sbjct: 342 KDGMVGNMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VSFARTGVIEGDWPAHTFPLPSGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|295688681|ref|YP_003592374.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430584|gb|ADG09756.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 843

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/436 (20%), Positives = 184/436 (42%), Gaps = 34/436 (7%)

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            +  +  W    GQ       ++  G    I +  ++T +   + +         + I+ 
Sbjct: 402 GQGQRSLWIDARGQGF---GRADADGYSRIIGVALDVTEERVAQARAQAAENRLRDAIES 458

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +SE   ++   GR+ + N  +R+++  +   L PG     I    +    +       A 
Sbjct: 459 VSEAFVLWDRHGRLLMCNRNYRNVFSLDPKLLKPGAARAEINRRAALAIKQDHSAPDAAK 518

Query: 503 IITSFD---------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            +   +          ER++ +G L + +  +   +I     A+ +            ER
Sbjct: 519 GVREAELMDGRWIQISERRTAEGGLVMTAADI--TAIKNQDEARRLNQEQLQNAVAGLER 576

Query: 554 ALTEKNEALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           +  +  E  RK           +  K+ F+ ++S+ELR+PL  I GF++++     G L 
Sbjct: 577 SQEQLAELARKYETEKVRAEGANRAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLG 636

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +   Y + I +S   LL L+NDILD++ ++AG M L +  + + D+  +  + +  + 
Sbjct: 637 DERYKGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFEPMHVEDVAEDAVRLVRNRA 696

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGD 718
               + +++     L    AD + + Q+   +LSNA+ F+ +  +V L A          
Sbjct: 697 EAAGLNLRIDFPP-LPEIEADYRAIKQVLLNLLSNAIKFTPRAGSVTLTAEVRRDAFGDM 755

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV + G  I ++    +   F           +G GLGL++ +S I++H G + ++S
Sbjct: 756 VRVSVADTGIGIAKEDLARLARPFEQVESQFSKTTQGTGLGLALTKSLISMHDGALEMTS 815

Query: 777 SDEGVTTINCRIPSKE 792
           +    TT++  +P ++
Sbjct: 816 TPGEGTTVSFALPIRQ 831



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 103/330 (31%), Gaps = 32/330 (9%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60
           + A  A    G G       S  +++   +A  +   ++ ++           +  ++ +
Sbjct: 266 LTAVFAAPSSGDG---GVPTSSALSLLIPLAAGIGLALLLVV-----------QSRKSEA 311

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWD-GKDE--TPEIIGQLHQRIDIPQTDTDLLSFEN 117
              E  D   ++   +    C    WD   DE    ++ G                   +
Sbjct: 312 AQREFIDSEQRFRLAVEAARCGIWEWDLNADEVFLSDVTG--AMFGWGGGGVVSGQDLLD 369

Query: 118 WLKFHHYIKLSKATEKLRKEGQ---SFDLVAETQNDCA--IKIEGRVSGSCAFLRILSLD 172
            +   H  +L KA       G    SF + A  Q   +  I   G+  G         + 
Sbjct: 370 RIAPDHRERLRKALANAALYGAFDVSFRVPAVGQGQRSLWIDARGQGFGRADADGYSRII 429

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--NTETEG 230
           G+  ++ E  +   +     +  +   +S+       D+ G +L  N +Y+   + + + 
Sbjct: 430 GVALDVTEERVAQARAQAAENRLRDAIESVSEAFVLWDRHGRLLMCNRNYRNVFSLDPKL 489

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEA 289
           +    A  E  +     IK+   +  A +      +      + +  +I  R     G  
Sbjct: 490 LKPGAARAEINRRAALAIKQDHSAPDAAKGVREAELM-----DGRWIQISERRTAEGGLV 544

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
             A D++     ++      E L N    +
Sbjct: 545 MTAADITAIKNQDEARRLNQEQLQNAVAGL 574


>gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 609

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/415 (22%), Positives = 175/415 (42%), Gaps = 33/415 (7%)

Query: 386 ETHKDTWHLPNGQTLH--VIVTSNPRGGTIWMFENLTVQVDLETKYNTLV-KVQGETIDH 442
           E  K    + +G+      +  S+  G     F  +T ++      N    +     + +
Sbjct: 210 ELTKHARAVADGRFTEKTPVFGSDEIGQLSQAFNYMTSRLREALSQNEEEKEKLASILTN 269

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT--HIRNIAATCSRYYNESDGWDLF 500
           +S+GV      GR+ L N     +   E   L+      +  +  + S     S+G D  
Sbjct: 270 MSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSLLGLEESESEALARSEGHD-- 327

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
                S   E    +G+   +    +  +  P+   +  +T          E+       
Sbjct: 328 -----SKLLEIVPREGSEPFM----MRVTFTPIHRREIGITGTIAVLQDVTEQE------ 372

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASST 618
              K +  +  FV +VS+ELR+PLT I  +T+ L+    G+L  KQ   ++V  I   + 
Sbjct: 373 ---KLEASRREFVANVSHELRTPLTTIKSYTEALED---GALEDKQMGPRFVGVIQNETG 426

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            ++ LV D+L L+ +D+    L+     + ++L +V+   + +M + +IR  +     + 
Sbjct: 427 RMIRLVTDLLHLSRLDSKEAALHKEPTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVS 486

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKS 737
           + + DR  + Q+   ++SNA+ ++  G T+ + A+  + G    SVK+ G  IP+     
Sbjct: 487 TAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDR 546

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F RF        R   G GLGLSI    +  HGG +++ S  E  TT+   +P 
Sbjct: 547 IFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLPL 601



 Score = 42.6 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 10/138 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN--PSND 353
                  ++      IL N++  +   D+   +   NR   E+  ++   LA +   S  
Sbjct: 251 EALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSLL 310

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
            L E    A    E  +       +  +     +      +       +        GTI
Sbjct: 311 GLEESESEALARSEGHD-----SKLLEIVPREGSEPFMMRV---TFTPIHRREIGITGTI 362

Query: 414 WMFENLTVQVDLETKYNT 431
            + +++T Q  LE     
Sbjct: 363 AVLQDVTEQEKLEASRRE 380


>gi|149174913|ref|ZP_01853537.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
 gi|148846250|gb|EDL60589.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
          Length = 989

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 153/379 (40%), Gaps = 21/379 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L+   D E +Y          +D++ + +     +G+I+  N     L+    +  + G 
Sbjct: 451 LSDVKDREVRYR-------SIMDNVMDAIITIDLEGKIEEFNRGAEYLFGYYNHE-AIGK 502

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNA 536
            I  +     +              +      R+ +       S    E   S + L + 
Sbjct: 503 SIDLLIPPLHQKIQHKYSSGELNPQLVRAIGSRQEIVAQRNDGSTFPAELAVSSVLLADR 562

Query: 537 QTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       ++++    ER+L E  +    A E K+ F+ ++S+E+R+P+T I+GFTD+L 
Sbjct: 563 EIFTGIIQDISERKDYERSLNEARKRAEAASEAKSEFLANMSHEIRTPMTAILGFTDILL 622

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +     + + +     +  +   L+ ++NDILDL+ ++A  ++L    +   +L+ ++ 
Sbjct: 623 NNLRKKEDIESA---NIVKRNGEYLIGVINDILDLSKIEARKLELEQVRVNTIELIRDIV 679

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVIL 710
             +  K     + + V  D  +  + V D  RL QI   +L NA+ F+  G     T  +
Sbjct: 680 ALMQIKADLKELELVVSFDNPIPETIVTDPTRLRQILINLLGNAIKFTDSGYVELRTRTI 739

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                     F V + G  I E     ++  F        R   G GLGL+I +    + 
Sbjct: 740 HLEDGFAQLQFDVIDTGIGISETALAQIYQPFTQADSSTTRKYGGTGLGLAISKRLSEML 799

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG + ++S+    +T    
Sbjct: 800 GGRIHVTSTIGSGSTFTIS 818


>gi|91786123|ref|YP_547075.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91695348|gb|ABE42177.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 953

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/500 (19%), Positives = 193/500 (38%), Gaps = 25/500 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E  + D  T T  I  ++  A+     +  +   N + ++L+  + + L     ++ + 
Sbjct: 210 AEAKLRDSETMTRMITESMADAVITTTDDDIVLQANAAALQLFGYEKSELIGRDVSELVP 269

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---SNPRGGTI 413
           E LR   K     ++          ++ ++ H       +G      V+    +  G  +
Sbjct: 270 ERLRGQYK-----SFTAALRARPEPFRMAD-HDVRSMRKDGTEFPASVSFSDVHVGGQRL 323

Query: 414 W--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           +  +  + T +  +            +  D +   +A    + R +  N A+  +   E 
Sbjct: 324 FTALISDNTERRRITEALRASESQLRQITDTVPALIAYLDLEQRFRFHNRAYEEVLGLEF 383

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
            R+  G  +  +         +    +        ++  + + QG  +        Y++ 
Sbjct: 384 ERID-GHTLAEVLGPQLYEGVQDKVDEALRGYAVQYERVQVTPQGDRK-------NYAMQ 435

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
             P          V        +L      L++ D +K  FV  VS+ELR+PLT+I G  
Sbjct: 436 YFPRYGEGADEGKVVGFF----SLGTDITELKRIDRMKTEFVSTVSHELRTPLTSIRGSL 491

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L+     G L       V   +++   L+ L+ND+LD   +++G ++LN     L  LL
Sbjct: 492 GLISGGVAGELPEAVKSLVAIATSNCERLIRLINDMLDSEKIESGKLRLNLQAAELKPLL 551

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +   +      ++ +++++ +         D  RL+Q+ + +LSNA+ FS  GSTV + 
Sbjct: 552 RQALAANEGFAAQHGVKLRLRAPDAALQARIDGDRLMQVMTNLLSNAVKFSPAGSTVEVM 611

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            +R        V + G  IPE     +F +F         Q+ G GLGL+I    I   G
Sbjct: 612 LSRTARQVRVEVSDQGPGIPEAFRNRIFQKFSQADSSDTRQKGGSGLGLNISRGLIESMG 671

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +  +S+    TT    +P
Sbjct: 672 GRIGFNSNGGAGTTFFFELP 691


>gi|218441451|ref|YP_002379780.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218174179|gb|ACK72912.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1060

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/696 (16%), Positives = 224/696 (32%), Gaps = 108/696 (15%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
            +  ++ +       L      +  L +     ++  D  G+ ++ N  +    +  G+  
Sbjct: 388  MALDVTQRKQAELALYASERRYSTLSELAPVGIFRSDSQGNCIYVNQKW---CQITGLTP 444

Query: 234  QKAIGES-----------------------RKLFKEEIKKRMISSSALEKNFCETVSTLE 270
            ++A+G                         + LF  E + + +              T  
Sbjct: 445  EQALGTGWISSLHPEDRQRVITQWNYCLSHQTLFSSEYRFQDLQGEITWVVGQAIAETTP 504

Query: 271  HGN-----NKSYKIVRVLNSFGEAGIA-----IDVSKE--------ITVNDQLTHTYEI- 311
             G           I    ++      A     I V +           +  +L    +  
Sbjct: 505  KGEIIGYIGTLTDITARKHTEQALSTAKAELEIRVEERTAELKDSNEKLQQELAEKQKTQ 564

Query: 312  ---------LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                     L      I   D    + F N+   +++         + S+  L       
Sbjct: 565  IILAEQAQLLDLAHDVIMSRDLKGMILFWNQGAEKVYGFSKTEALGHNSHALL------K 618

Query: 363  NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---SNPRGG----TIWM 415
             + PE +    +       Y   E  +   H  +GQ + V         + G     + +
Sbjct: 619  TQFPEPIK-TIFTRLFADNYWEGELIQ---HKRDGQKIIVASRWVLQRDQRGKPSKILEI 674

Query: 416  FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
              ++T +   E              +    G+ +    G+I  +NP +  +       + 
Sbjct: 675  NNDITARKQAEEALQQNEAKFRSLCESSPIGIFLTDTQGQILYTNPRYLEIAGANAKDVL 734

Query: 476  PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             G   +            SD          SF  E +       +   ++   S I   N
Sbjct: 735  -GEGWKQFIHPEDHETIISDWSANLGQQQNSFYPEIRFHHKNGPIRYGNIY-TSAIFTEN 792

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             Q       V D     +            +++K  F+  VS+ELR+PLT I G   LL 
Sbjct: 793  GQLTGFVGTVEDITERRQ-----------IEQMKKDFISVVSHELRTPLTAIHGSLGLLA 841

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 +   K  + +   +  +  L+ LVNDILDL  +++G ++L   +     L+ +  
Sbjct: 842  AGVYDNKPEKGKKMIHIAATQTDRLVRLVNDILDLGRLESGNLQLVMKSCQTATLMQQAV 901

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
            + +  K  EN + + VI         AD   ++Q  + +LSNA+ FS   ST+++KA   
Sbjct: 902  EVMRPKAEENQVTLSVI--PLDVFVWADFDAIIQTLTNLLSNAIKFSPPNSTIVVKAELM 959

Query: 714  -RDNG-----------------DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRG 753
              D+                    +F V++ G  IP D    +F +F     +   ++ G
Sbjct: 960  SIDDNIKVWQKKTPSLALLPSPYVLFQVQDQGRGIPVDKLSLIFEKFQQIDTSDSREKGG 1019

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             GLGL+I  + I  H G +   S     +     +P
Sbjct: 1020 TGLGLAICRTIIEQHKGQIWAESVLGKGSIFYFTLP 1055



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/444 (12%), Positives = 129/444 (29%), Gaps = 71/444 (15%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-------KNT 226
           + +E+ E       L      F+         +    + G+IL  N ++        +  
Sbjct: 260 LKNEIEERKQLEHLLRESEERFRQAIFEAPLPIIIHAEDGEILQINWAWSEISGYQPEQI 319

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
            T     +K  GE+ ++ +  I+ ++   +        T++    G    +         
Sbjct: 320 PTLSAWTEKVYGENHQVIRAYIR-QLFQLNQRVAEGEFTLTNR-QGKTLIWDFYSAPLKT 377

Query: 287 GEAG------IAIDVSKEITVNDQL---THTYEILHNL-TVAIAIFDQNRYLQFHNRSFV 336
              G      +A+DV++       L      Y  L  L  V I   D      + N+ + 
Sbjct: 378 LFDGRKVRITMALDVTQRKQAELALYASERRYSTLSELAPVGIFRSDSQGNCIYVNQKWC 437

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           ++  +             L          PE       + N    +++  + +  +    
Sbjct: 438 QITGLTPEQALGTGWISSL---------HPEDRQRVITQWNYCLSHQTLFSSEYRFQDLQ 488

Query: 397 GQTLHVIVTS----NPRG---GTIWMFENLTVQVDLETKYNTL----------------- 432
           G+   V+  +     P+G   G I    ++T +   E   +T                  
Sbjct: 489 GEITWVVGQAIAETTPKGEIIGYIGTLTDITARKHTEQALSTAKAELEIRVEERTAELKD 548

Query: 433 ------------------VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
                             +  Q + +D   + +      G I   N     ++   +   
Sbjct: 549 SNEKLQQELAEKQKTQIILAEQAQLLDLAHDVIMSRDLKGMILFWNQGAEKVYGFSKTE- 607

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           + G +   +  T      ++    LFA      +  +    G   +++   +        
Sbjct: 608 ALGHNSHALLKTQFPEPIKTIFTRLFADNYWEGELIQHKRDGQKIIVASRWVLQRDQRGK 667

Query: 535 NAQTMLTFVNVTDSVRAERALTEK 558
            ++ +    ++T   +AE AL + 
Sbjct: 668 PSKILEINNDITARKQAEEALQQN 691



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 108/344 (31%), Gaps = 29/344 (8%)

Query: 294 DVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           ++ +   +   L  + E          + I I  ++  +   N ++ E+       +   
Sbjct: 263 EIEERKQLEHLLRESEERFRQAIFEAPLPIIIHAEDGEILQINWAWSEISGYQPEQI--- 319

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP- 408
           P+     E +   N        + +   +F + +     + T     G+TL     S P 
Sbjct: 320 PTLSAWTEKVYGEN----HQVIRAYIRQLFQLNQRVAEGEFTLTNRQGKTLIWDFYSAPL 375

Query: 409 ------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                 R   I M  ++T +   E       +      +    G+      G     N  
Sbjct: 376 KTLFDGRKVRITMALDVTQRKQAELALYASERRYSTLSELAPVGIFRSDSQGNCIYVNQK 435

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           +  +      +      I ++     +       + L    + S +   + LQG +  + 
Sbjct: 436 WCQITGLTPEQALGTGWISSLHPEDRQRVITQWNYCLSHQTLFSSEYRFQDLQGEITWVV 495

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              +  +         + T  ++T     E+AL+     L    E + + ++  + +L+ 
Sbjct: 496 GQAIAETTPKGEIIGYIGTLTDITARKHTEQALSTAKAELEIRVEERTAELKDSNEKLQQ 555

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA--SSTILLNLV 624
                    +L +  K   + ++Q+Q ++       S  L  ++
Sbjct: 556 ---------ELAEKQKTQIILAEQAQLLDLAHDVIMSRDLKGMI 590



 Score = 38.8 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 16/165 (9%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I +   +  +  LE       +   + I      + +   DG I   N A+  +   +  
Sbjct: 258 IILKNEIEERKQLEHLLRESEERFRQAIFEAPLPIIIHAEDGEILQINWAWSEISGYQPE 317

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEY 528
           +      I  ++A   + Y E +   + A I   F   ++  +G   L +      + ++
Sbjct: 318 Q------IPTLSAWTEKVYGE-NHQVIRAYIRQLFQLNQRVAEGEFTLTNRQGKTLIWDF 370

Query: 529 SIIPLP---NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEI 568
              PL    + + +   +  +VT   +AE AL           E+
Sbjct: 371 YSAPLKTLFDGRKVRITMALDVTQRKQAELALYASERRYSTLSEL 415


>gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 914

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/519 (20%), Positives = 199/519 (38%), Gaps = 42/519 (8%)

Query: 296 SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYL-QFHNRSFVELWEIDLAFLATNP 350
           S EI   + L  + E    L      A  + D +  L    NR+            A   
Sbjct: 4   SAEIVAREALERSEEKFRMLFDLFPDATVLIDLSTGLPVQFNRTAHTQLGYSAEEFAQL- 62

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL---HVIVTSN 407
              ++ ++   A + PE+        +I ++ +S     +T H   G  +    V V   
Sbjct: 63  ---QIPDY--EAQETPEET-----AAHIQTIMESGRDDFETQHRTKGGAILDIRVTVMKL 112

Query: 408 PRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS----- 459
             G     + +F +++ Q  L+              D    GV  +  +  I +      
Sbjct: 113 EIGAKPHFLCVFRDISEQKQLQRTLQESRDRLEVAADSAQIGVWDYDVERDILVWDEWMY 172

Query: 460 ---NPAFRSLWKTEENRLS--PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
              N +        E             + A  S+   +          I   +   +++
Sbjct: 173 RIYNISADDFTGAYEAWSQALHPEDFSWVTALFSQALLDPKVQFNPVFRIIWPNGTIRTI 232

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           + T ++  +S  +   +   N           +  ++E  LT   E    A   K++F+ 
Sbjct: 233 KATSKVALNSSGKAIRVVGSNRDITEQHQAQEELKKSEAQLTIAKEQAEAASAAKSAFLA 292

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  I+GF+ L        L  K   Y+E I  S+  LL ++NDILD + ++
Sbjct: 293 NMSHEIRTPMNAIVGFSRLALQ---DELPPKPRDYLEKIDQSAHSLLKIINDILDFSKIE 349

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSK 693
           AG + +      L+++L+ V Q +A +  E  + +          + + D  RL Q+   
Sbjct: 350 AGKLTMEEVPFDLSEVLDNVGQMMAMRTEEKGLELLFALGPEVPPNLIGDPLRLSQVLIN 409

Query: 694 ILSNAMDFSSKGSTVI-LKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + +NA+ F+ +G  V+ +       D  +  F++K++G  + E+    +F  F       
Sbjct: 410 LTNNAVKFTEQGEIVLQVSCPEPTADPVELQFAIKDSGIGMNEEQIARIFQPFTQADDST 469

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            R   G GLGLSIV   +   GG V +SS+    +T + 
Sbjct: 470 TRSYGGTGLGLSIVRRLVESMGGEVEVSSTPGKGSTFSF 508


>gi|168186870|ref|ZP_02621505.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169295198|gb|EDS77331.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 658

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/499 (20%), Positives = 203/499 (40%), Gaps = 32/499 (6%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR---- 360
           + H   +L+NL+  + ++D+     F N++ V+L   D+           L  +L     
Sbjct: 145 VNHLKNVLNNLSEGLIVYDEFGKFSFCNKAAVDLMGEDI----KQIDFRNLFRYLNINSA 200

Query: 361 --SANKLPE---QLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
                KL E     N+K      F +  K ++ H D +   N    + I+  N    T+ 
Sbjct: 201 ELDEIKLQEIYYNHNFKHIPIKDFEIKLKGNKDHDDMYIQLNS---NYILKENCITNTVL 257

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENR 473
             +++T   + E K     +   + ++ +   +AV   D  + KL N  ++ + K   N 
Sbjct: 258 TLKDITNIKNKEIKLQEQREFINDVVNTIDVPIAVIEFDDLKYKLINNKYKEILKLNNNF 317

Query: 474 LSPGTHIRNIAATCSRYYN--ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                    I    +  +N    +   + A  +   DD                +++S  
Sbjct: 318 EGNKVKEAGILNVINNVFNKDRCENEHVVAPYVVKDDDGNNRYYK---------IKFSAK 368

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              +            +      +   NE L+   ++K+ F   +S+ELR+PLT I    
Sbjct: 369 LSESNDINKLNRLFIYAGDITEEIVHNNE-LQNISKMKDEFFNMISHELRTPLTIINSSV 427

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L K      +    ++ +  I  +   LL L+N+ILD++  +AG ++L YS   +  + 
Sbjct: 428 QLAKNVYKDEVTDTINKILMRIDQNCRRLLKLINNILDISKAEAGFLQLEYSFFNIVSVT 487

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             +  S+       +I +   ++ +      D+ +  +I   +LSNA+ F+S G  + + 
Sbjct: 488 ESIVNSVNIYAKSKDINLIFDTNEEEKMIALDKDKYEKIILNLLSNAIKFTSNGKYIYVN 547

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769
              +       VK+ G  IP++   ++F+RF+   N+ +    G GLGLS+V++F+ L  
Sbjct: 548 IYAEENSVQVKVKDEGVGIPKESLNNIFDRFIQINNSAKNTTPGTGLGLSLVKNFVELMD 607

Query: 770 GHVSISSSDEGVTTINCRI 788
           G++ ++S  +  T      
Sbjct: 608 GNIKVNSEIDKGTEFIITF 626



 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 14/188 (7%)

Query: 310 EILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLP 366
           E+   L   + I  + +  +QF N +F++++ ID+       S   L E L     N + 
Sbjct: 8   EVYDKLPFGVVIIKESDLNIQFINSTFIDMFNIDIDIKDKQLSTISLFENLEEIIKNCIK 67

Query: 367 EQLNWKTWK-ENIFSVYKSS-----ETHKDTWHLPNGQTLHVIVT-SNPRGGTIWMFENL 419
            +++ K  + E +   Y        E   + +     Q +++     N     +WM   L
Sbjct: 68  FKIDKKLRQVEIMHKRYFDITVNICEKQVNVFFYEVSQYINLYYQLKNSNDSFLWMCSEL 127

Query: 420 TVQVDLETKYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             + D+        K         +++LSEG+ V+   G+    N A   L   +  ++ 
Sbjct: 128 KTKCDVLQSLRNKEKNGVNHLKNVLNNLSEGLIVYDEFGKFSFCNKAAVDLMGEDIKQID 187

Query: 476 PGTHIRNI 483
                R +
Sbjct: 188 FRNLFRYL 195


>gi|219847925|ref|YP_002462358.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219542184|gb|ACL23922.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 747

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/504 (20%), Positives = 196/504 (38%), Gaps = 20/504 (3%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
             D L     +      A+ +    +      NRSF  +       +         +   
Sbjct: 11  QRDALQQLEHVFGAQPDAVLLSRLTDGVFVKVNRSFTTISGYSAEEVLGKDGLTLNIWRS 70

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
               +   +L  +                +    L + QT+ +    +     I +  ++
Sbjct: 71  PEDRRHWAELMRRDGYCVGLEFQFRRRNGELRTCLLSSQTVMIRGVPH----AISIIHDI 126

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +E +            ++ ++ + +F P   R    +P+   L           +
Sbjct: 127 TERKQIEAELQRSEARYRLIAENATDVIWLFDPVRMRFTFFSPSIHKLIGYSAAEAQEMS 186

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNA 536
               +    +++ + +  + L               +  L      V++  II   + + 
Sbjct: 187 FADFLTVESAQHVHSALQYMLNHWEGDLTTAPPWVAEIDLIHRDGHVVQAEIITSFVRDE 246

Query: 537 Q----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +     +    ++T   +AE AL    +    A+  K++F+ +VS+ELR+PL  ++GF  
Sbjct: 247 EQRLIVLGVARDITARKQAEVALRIARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQ 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL      +L   Q +Y+  I+ S   LL L+N++LDLA ++AG    N + + +  L+ 
Sbjct: 307 LLAND--NNLTPTQQEYLAIINRSGEHLLRLINEVLDLAKIEAGRYTYNAAPLNVRQLIE 364

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +V+     +     + + V   G + +  ++D  +L QI   +LSNA+ F+  GS V L 
Sbjct: 365 DVQLLFRNRAEAKQLHLNVTCAGNVPTLIISDEAKLRQILINLLSNAIKFTDVGS-VHLH 423

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768
             R+    +F+V++ G  IP    + +F  F      G+     GVGLGLSI      L 
Sbjct: 424 VIREEQRLLFTVEDTGIGIPPLDQQKLFRPFFQGQQTGEYNSSVGVGLGLSISYELARLI 483

Query: 769 GGHVSISSSDEG-VTTINCRIPSK 791
           GG +S+ S   G  +     IP +
Sbjct: 484 GGDLSVYSEGRGCGSRFTLVIPLQ 507


>gi|224537735|ref|ZP_03678274.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520658|gb|EEF89763.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 775

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 174/396 (43%), Gaps = 9/396 (2%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRI 456
              VIV        ++ F +  ++    T++   + +    +D+L     V     D R 
Sbjct: 378 IYVVIVLGTAIVLLLFYFMHKRIKKVRATEWQEHLHLLENILDNLPIAAKVKDVDNDMRY 437

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N     L++         T    +    +    E +  +L    I  F   R     
Sbjct: 438 TFINKKAEELFEYPAKEAIGRTDFDIMPEAATMIRKEDE--ELVRTGIAQFGTRRFFTNK 495

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             E  +                + T  ++TD    ER L    E   +++ IK++F+ ++
Sbjct: 496 NEERFTFQNNNIVSFSDGRKWILYTAWDITDQKILERKLRLAKEEAEESNRIKSAFLANM 555

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+ +L          ++ +Y+  IS ++ ILL L+NDILDL+ ++AG
Sbjct: 556 SHEIRTPLNAIVGFSSILAEDVS---EEERIEYLSIISKNNDILLQLINDILDLSKIEAG 612

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++  Y+ I +N +L+E++Q+   +    N+ I  +          D++R+ Q+ +  +S
Sbjct: 613 TLEYVYANIDVNKMLSEIEQAARMRQPNANVAICAVMPMPDLLLYTDQRRITQVLNNFIS 672

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NAM F++ GS         +G   F V + G+ IP +    +FNRFV       ++G GL
Sbjct: 673 NAMKFTNTGSITFGYEEPKDGYIRFFVTDTGTGIPPEKVADIFNRFVKLDSF--KQGTGL 730

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I ++ +    G + + S     +T    +P ++
Sbjct: 731 GLAISQNIVKELKGEIGVLSELGKGSTFWFTLPYEK 766



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 13/160 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVA--IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +     + L     IL NL +A  +   D +    F N+   EL+E            D 
Sbjct: 404 RATEWQEHLHLLENILDNLPIAAKVKDVDNDMRYTFINKKAEELFEYPAKEAIGRTDFDI 463

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + E      K  E+L      +     + +++  +      N    +++  S+ R   ++
Sbjct: 464 MPEAATMIRKEDEELVRTGIAQFGTRRFFTNKNEERFTFQNN----NIVSFSDGRKWILY 519

Query: 415 MFENLTVQVDLETKYN-------TLVKVQGETIDHLSEGV 447
              ++T Q  LE K            +++   + ++S  +
Sbjct: 520 TAWDITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEI 559


>gi|220919555|ref|YP_002494859.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957409|gb|ACL67793.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 461

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 124/242 (51%), Gaps = 4/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +    L++ D +K++F+  +S+ELR+PLT++IG+++++     G L ++Q +Y+  
Sbjct: 203 QKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGI 262

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      LL L+  ILD++ ++AG ++L  S +    L+ +   ++     +  +++   
Sbjct: 263 IMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKKGLKVSCD 322

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIP 731
           +   L    ADR +L Q    + SNA+ F+  G ++ + A           V ++G  IP
Sbjct: 323 TTP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVVDSGIGIP 381

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+    VF+ F        R   G GLGL+IV+SF+  HGG + + S+    +     +P
Sbjct: 382 EEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGSVFTVLLP 441

Query: 790 SK 791
            +
Sbjct: 442 IR 443


>gi|157376076|ref|YP_001474676.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3]
 gi|157318450|gb|ABV37548.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3]
          Length = 1169

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/510 (20%), Positives = 199/510 (39%), Gaps = 41/510 (8%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------PSND 353
            +    T    IL        I D +  +   N +   L+E +L  L         P+++
Sbjct: 229 DLESANTRLSTILETAVDGFIIVDTSGVITQVNSAVCRLFEYELDELIGENVSIFMPTHE 288

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
             +     +  +    + +  +E + +  +S E       +         +T       +
Sbjct: 289 RHMHDGFMSRFIQSARDARKGRE-LTAQNRSGEQFPIELSIS-------RMTIENETMLL 340

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            + ++L+     E        +   T++   + +      GRI+  N A   L+  +  +
Sbjct: 341 GLVKDLSDIKRKEVAALRTETILLATLEASQDALITIDITGRIQEFNDAACKLFGHKREQ 400

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------VLE 527
            + G  + ++        N   G  LF         E  +++ ++E++S         +E
Sbjct: 401 -ALGELLEDLIFVDIEKKNFKQGIQLFRQ-----TGEGPAIKKSIEMMSVKRDGSSFPVE 454

Query: 528 YSIIPLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             +IP+   + +L    V D    +  E  L +  +      + K+ F+  +S+E+RSPL
Sbjct: 455 MKMIPVQLGEEILLTAFVHDISKRIEYETQLKQAKDQAESGSKAKSRFLATMSHEIRSPL 514

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++G  +L+  SK   LN +Q  Y      + T LL+ +NDILD + ++AG M L   +
Sbjct: 515 NAVLGSVELMLDSK---LNKEQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMMLESVS 571

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
                ++ +V + +A   HE  I +    +  +   V  D QRL Q+   ++ NA+ FS 
Sbjct: 572 FSPAKIVAQVLRILAPNAHEKGINLACFINRNVPELVKGDPQRLRQVIHNLVDNAIKFS- 630

Query: 704 KGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
            G  V ++     +  +      +V + G  +     K +F  F      H    +G GL
Sbjct: 631 SGGCVSVEMWIPDSHHEEVQLYCAVTDEGIGVSMAAQKKLFKEFSQVHDQHNTNYKGSGL 690

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINC 786
           GL+I    I + GG + +SS     +    
Sbjct: 691 GLAICAELIEMMGGKIELSSRLGHGSCFRF 720



 Score = 44.2 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 82/283 (28%), Gaps = 36/283 (12%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                  L +  +    + ++        D +G I   N +  +  E E     + IGE+
Sbjct: 223 VEKNRSDLESANTRLSTILETAVDGFIIVDTSGVITQVNSAVCRLFEYE---LDELIGEN 279

Query: 241 RKLFKEEIKKRMISS--------SALEKNFCETVSTLEHGNNKSYKIV----RVLNSFGE 288
             +F    ++ M           +   +   E  +    G     ++      + N    
Sbjct: 280 VSIFMPTHERHMHDGFMSRFIQSARDARKGRELTAQNRSGEQFPIELSISRMTIENETML 339

Query: 289 AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            G+  D+S           T       L     A+   D    +Q  N +  +L+     
Sbjct: 340 LGLVKDLSDIKRKEVAALRTETILLATLEASQDALITIDITGRIQEFNDAACKLFG---- 395

Query: 345 FLATNPSNDELLEFLRS-ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL---PNGQTL 400
               +     L E L        E+ N+K   +      +     K    +    +G + 
Sbjct: 396 ----HKREQALGELLEDLIFVDIEKKNFKQGIQLFRQTGEGPAIKKSIEMMSVKRDGSSF 451

Query: 401 HVIVTSNP--RGGTIWM---FENLTVQVDLETKYNTLVKVQGE 438
            V +   P   G  I +     +++ +++ ET+          
Sbjct: 452 PVEMKMIPVQLGEEILLTAFVHDISKRIEYETQLKQAKDQAES 494


>gi|150015596|ref|YP_001307850.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149902061|gb|ABR32894.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 781

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 157/364 (43%), Gaps = 21/364 (5%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            Q   +     G        +I  +N     +   +    +      +++ T        
Sbjct: 277 RQSYFLTASGAGFIF-----KITFNNELMGYMEVEDIMFPNYMESYLDLSKTIMIILGIM 331

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR---- 550
                    +   ++E  SL   LE+L D     S +   N     T   + + +     
Sbjct: 332 LFNSKIYEKLIDTNEELLSLNNELEVLVDK--RTSQLLEVNGSLEETNCMLEEEIEEHKL 389

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  L    E   +A+  K+ F+ ++S+E+R+P+  I+G T LL+      L  +Q   V
Sbjct: 390 TETKLKAAKEEAERANSAKSQFLANMSHEIRTPMNGIMGMTSLLE---FSKLTDEQIDIV 446

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  SS  LL ++NDILDL+ +D G ++L    I + +L+NE +           ++++
Sbjct: 447 KMIETSSKHLLQIINDILDLSVMDVGKIELKPERINIFNLMNESRNLFTYLAENKGLKLE 506

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKN 725
           +I D  L    + D+ RL+Q+ S ++ NA+ F+ KG   V +    D  +    +FSVK+
Sbjct: 507 IIVDNNLPNEIILDKGRLMQVLSNLIGNAIKFTEKGKIQVSVDKVEDKENKVKLMFSVKD 566

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E+    +FN F        ++  G GLGL+I ++ + L GG +S+ S     +T
Sbjct: 567 TGIGIKEEDIPRLFNYFTQLDISASKKFQGTGLGLAISKNIVELMGGEISVESQYGKGST 626

Query: 784 INCR 787
               
Sbjct: 627 FYFT 630


>gi|160897314|ref|YP_001562896.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160362898|gb|ABX34511.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 842

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/511 (20%), Positives = 203/511 (39%), Gaps = 34/511 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +  +         ++ ++   I   D    L F N  + +L     A     P  + +
Sbjct: 339 QAQARLARSEHEMAVLMRSVQELIFRTDSQGLLTFVNARWEQLTGQPSAEAVGQPLENIV 398

Query: 356 -LEFLRSANKLPEQLNWKTWK--ENIFSVYKSSETHKDTWHLP---NGQTLHVIVTSNPR 409
              +L     L + L     +  + +F +  + E   D   +P   +GQ +         
Sbjct: 399 DGSYLAQIQALLDPLARLAPRNCQAMFRLPGNREMLCDIAVVPLLRDGQLV--------- 449

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G      ++T +   + +  T +  Q    +     + V   D R+ L N A+   +  
Sbjct: 450 -GFAGSAVDVTARWKAQQELQTQLAFQHLLFETTPLPMLVTDADQRVALVNKAWEDFFGR 508

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
               +  G  I+ + A             +  +       +R  ++  L  +  S  +  
Sbjct: 509 GRYAVL-GHEIKGLHARDDALLQMRSNQVVMRS------GQRMMVEARLPHVDGSYRDVQ 561

Query: 530 II--PLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           I    + NAQ  +T     FV+V++   AE A  E  +A  +A  +K+ FV ++S+ELR+
Sbjct: 562 ISKAAVKNAQGRITGVLSIFVDVSEFRAAEHATREARDAAEEAFRVKSEFVANMSHELRT 621

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL +I+GF +L         N   +     I  +   +L LVND+LD+A +++ +  ++ 
Sbjct: 622 PLQSIMGFAEL--GGLRSRGNPAMADMFNDIHEAGIRMLALVNDLLDVAKLESAVGTIHV 679

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               L  L+  V + +  +  +  I +++  D       AD  R  Q+   +L+NA+ FS
Sbjct: 680 ERTDLRSLIRPVVRELEPQQQQKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFS 739

Query: 703 SKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSI 760
             G  + ++   D  GD   +V + G  IP      +F  FV ++       G GLGL+I
Sbjct: 740 PIGGRIDVQGRIDEQGDICIAVSDQGPGIPPQELDKIFQPFVQSSKTRNGSGGTGLGLAI 799

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               I+   G ++ S+  EG +     +P +
Sbjct: 800 CRKIIDAMDGTIAASNRSEGGSLFRITLPCR 830



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 82/281 (29%), Gaps = 20/281 (7%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           ++ R      +       + +     +   L+     L    D +     +  +  Q   
Sbjct: 324 LKTRRVQKSALQAMEQAQARLARSEHEMAVLMRSVQELIFRTDSQGLLTFVNARWEQLTG 383

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKL-RKEGQSFDLVAETQNDCAIKIEGRVSGSC 163
            P  +      EN +   +  ++    + L R   ++   +     +  +  +  V    
Sbjct: 384 QPSAEAVGQPLENIVDGSYLAQIQALLDPLARLAPRNCQAMFRLPGNREMLCDIAVV--- 440

Query: 164 AFLRILSLDGIYSELAETTLK---CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
             LR   L G      + T +    ++L   ++   +LF++    +   D    +   N 
Sbjct: 441 PLLRDGQLVGFAGSAVDVTARWKAQQELQTQLAFQHLLFETTPLPMLVTDADQRVALVNK 500

Query: 221 SYKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
           +++           G   +        L   +++   +   + ++   E       G+ +
Sbjct: 501 AWEDFFGRGRYAVLGHEIKGLHARDDALL--QMRSNQVVMRSGQRMMVEARLPHVDGSYR 558

Query: 276 SYKIVRVLNS------FGEAGIAIDVSKEITVNDQLTHTYE 310
             +I +           G   I +DVS+            +
Sbjct: 559 DVQISKAAVKNAQGRITGVLSIFVDVSEFRAAEHATREARD 599


>gi|94314629|ref|YP_587838.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus
           metallidurans CH34]
 gi|93358481|gb|ABF12569.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus
           metallidurans CH34]
          Length = 1040

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 163/380 (42%), Gaps = 24/380 (6%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           +E   +  +  Q   +D + + + +   D R+   N AF         ++      R I 
Sbjct: 502 MEAVLHEQLAFQTSILDAIPQPIYLRDIDLRLMTCNAAFERALGCGRKQMRG----RTID 557

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLPNA-----QT 538
               +  +       +  ++ +   E  +L  TL +   + ++   + PL NA       
Sbjct: 558 QMPLKLGDVPLSMQTYRKVLAT--GEAATLDRTLMIEGKERIVLNWVEPLRNATGGVVGI 615

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTS 597
           +  ++++T+  +    L    +    A+  K++F+  +S+E+R+P+  I+G  +L L+  
Sbjct: 616 IGGWIDMTERQQMVTELASAKDRAEAANRAKSAFLASISHEIRTPMNAILGMLELTLQDK 675

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L   +  Q   VE    S+  L+ L++DILD + ++AG   L      L  L+ +V   
Sbjct: 676 RLPDDDRLQ---VETAQESAKSLIGLIDDILDASKMEAGKFVLTPQPAPLRQLIGDVTSL 732

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KA 712
                    ++++ I D  +    + D  R  Q+ + ++SNA+ F+ +GS VI       
Sbjct: 733 FGLAASRKGVQLEAIVDDAVAPCHMVDPLRFKQVLNNLVSNAVRFTDRGSVVIRLGATNL 792

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGH 771
             D     FSV + G+ IPED  K +F  F      +    G GLGLSI +  +    G 
Sbjct: 793 TPDCQSLTFSVSDTGTGIPEDGLKKLFQPFTQIGDTKRSAGGTGLGLSICQRLVTKMHGT 852

Query: 772 VSISSSDEGVTTI--NCRIP 789
           + I+S     TT+     +P
Sbjct: 853 IGITSEVGKGTTVTATIELP 872



 Score = 38.4 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 43/132 (32%), Gaps = 9/132 (6%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQKAIGESRKLFK 245
           L   ++    + D++   ++ RD    ++  N ++++      + +  +       KL  
Sbjct: 506 LHEQLAFQTSILDAIPQPIYLRDIDLRLMTCNAAFERALGCGRKQMRGRTIDQMPLKLGD 565

Query: 246 EEIKKRMISS--SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA-----IDVSKE 298
             +  +      +  E    +    +E         V  L +     +      ID+++ 
Sbjct: 566 VPLSMQTYRKVLATGEAATLDRTLMIEGKERIVLNWVEPLRNATGGVVGIIGGWIDMTER 625

Query: 299 ITVNDQLTHTYE 310
             +  +L    +
Sbjct: 626 QQMVTELASAKD 637


>gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 902

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 167/388 (43%), Gaps = 21/388 (5%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLS 475
           ++  +   E           +  + +   +AV  +G DG  +  N A  +L+    +   
Sbjct: 360 DIARRTQAEKALLESESRFRKLFEQVP-AIAVQGYGMDGIARYWNQASENLYGYSADEAI 418

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE----RKSLQGTLELLSDSVLEYSII 531
                  I     R   E+    +    I     E    RK     +   S +++E +  
Sbjct: 419 GAKLTDLIIPPEMRTDVEAAMRSMGETKIPIPASELTLMRKDGSRVVVFSSHAIVEKAG- 477

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                +     +++T    AE AL +  +A   A++ K+ F+ ++S+E+R+P+  ++G  
Sbjct: 478 --GEPELFCVDIDLTSRKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRTPINGVMGML 535

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+T+    L+++Q+ Y+   + ++  L  L+ DILDL+ V+AG M++  +   + D++
Sbjct: 536 QLLETT---PLDAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKMEIREAPFHIQDII 592

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST--- 707
           + V    A       + ++      +    + D  R+ Q+   ++ NA+ F+ +G     
Sbjct: 593 DSVTGLFAVTARNKGLILECRLAPDMPGILLGDEMRIRQVLFNLVGNALKFTERGRVEMD 652

Query: 708 VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
           +   +A+D         V + G  I ED    +F  F    +      +G GLGLSIV  
Sbjct: 653 ISALSAKDEDTCRVHLCVTDTGIGIAEDRLGEIFEPFRQVENSFTRNYQGAGLGLSIVHR 712

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            + L  G +SI S+    T+++  +P +
Sbjct: 713 LVALMAGTISIESAPGEGTSVHVVLPLR 740


>gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1095

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 162/413 (39%), Gaps = 44/413 (10%)

Query: 412 TIWMFENLT----VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            I  F ++T     Q   +              D   + + +    G +   NPA  ++ 
Sbjct: 155 VISFFADITWNLVEQKRTQEALQNSQARLKTITDAAQDAIIMMDTRGIVSFWNPAAETIL 214

Query: 468 KTEE--------NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                       + L   +  R         + ++   +        +   +   +  +E
Sbjct: 215 GYTRDEAMGRDLHELIMPSRYRKNFQAAFPEFKKTGHGNAVGMTTELYAQTKDGREIPVE 274

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD------------- 566
           L   SVL   I    NA  +    ++T+   A+  L      L + +             
Sbjct: 275 LALSSVL---IDDQWNA--VGVVRDITEKKEAQEELQRHGRNLERKNVELNAARLEAEEA 329

Query: 567 -EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K+ F+ ++S+E+R+P+  IIG + L   +    LN+KQ  Y+  + +S+  LL ++N
Sbjct: 330 TRAKSEFLANMSHEIRTPMNAIIGLSYLCLQT---DLNNKQHDYLTKVHSSAQSLLGIIN 386

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADR 684
           DILDL+ V+AG +++ +    L D+ + +   I  K  E  +   V +   +  F V D 
Sbjct: 387 DILDLSKVEAGKLEIEHIPFALQDVTDHLTSIIHVKAQEKQLHFHVETAIDIPPFLVGDP 446

Query: 685 QRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD----FIFSVKNNGSSIPEDMCKS 737
            RL QI   +  NA+ F+S+G     ++L    +  +      F++K+ G+ +  +    
Sbjct: 447 LRLGQILINLCGNAIKFTSQGQVMLQIVLAEQTEQTEQTARIHFAIKDTGTGMTPEQISR 506

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F        R   G GLGL I +  +   GG +S+ S     +T    I
Sbjct: 507 LFQAFSQADSSTTRQFGGTGLGLVISKQLVETMGGEISVESEPGKGSTFMFTI 559


>gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
 gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
          Length = 1175

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 113/617 (18%), Positives = 236/617 (38%), Gaps = 62/617 (10%)

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI--------KKRMISSSALEKNFC 263
            G +L AN +  K    +     +A+  + + F            + ++I+ +       
Sbjct: 291 DGHLLLANPASLKIFGFQEEQLNEALKLTFRNFIHPDFLEEAINYRAQLIAGAIDSYQME 350

Query: 264 E---TVSTLEHGNNKSYKIVRVLNSFGEAGIA--IDVSK----EITVNDQLTHTYEILHN 314
                +  +E     S  +V+  +   +  I+   D+++    E    +           
Sbjct: 351 AKFYRIDRVEIWCRLSVSLVKGEDGIKDRIISQVEDITERKHLEFKAKEHAKRFTTAFEY 410

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
               + +          N++   ++      F+    S     + L+         + K 
Sbjct: 411 SPNGMGMVSIEGDWLMVNQNLASIFGYKKEEFINKRSSELTHPDDLK--------KDSKQ 462

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRGGTIWMF---ENLTVQVDLE 426
            K  I     +    K   H  +G+ +H    V V ++ +G  +++     +L+ +V  E
Sbjct: 463 LKALINLEIDTYSIEKRFVHR-SGKIIHGLLNVSVVTDEQGTPLYLIGQISDLSKRVKAE 521

Query: 427 TKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
                 +    + ++  +   +     DG I+  N    +L       +    ++ +   
Sbjct: 522 QALQKSLTEFQQLMNATTKVSIMETNLDGIIQKFNRGAENLLGYTAEEVVGRMNVSSFHT 581

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTML 540
                  E+D    + A                +  S   ++  I P+ N        + 
Sbjct: 582 EEEFIEREADHQKFYDA----------EWTYKRKDGSTFPVKLVITPVHNETGDVFGYLG 631

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +++++    E +L E  +    A+  K+ F+ ++S+E+R+PL  IIGFTDLL  + L 
Sbjct: 632 VAIDISNLKEMEYSLVEARKKAEAANRSKSEFLANMSHEIRTPLNGIIGFTDLLMQTSLA 691

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                Q +Y++ +  S+  L++L+NDILD + ++AG ++LN     L +L  +    +  
Sbjct: 692 PF---QQKYMQTVHNSANTLMDLINDILDFSKIEAGKLELNEERTDLIELCTQTVDIVKH 748

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA----- 713
           + H+  + + +     +  FV AD  RL QI   +L NA+ F+ +G   + + A+     
Sbjct: 749 QAHQKGLEMLLQISPDVKRFVQADSIRLRQILINLLGNAVKFTDQGEVALTVTASNTIAQ 808

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
            +  +F F +++ G  I       +FN F        R   G GLGL+I    +NL G  
Sbjct: 809 ENEAEFKFEIRDTGIGIDPKNINKIFNAFDQEDVSTTRKYGGSGLGLTISNRLLNLMGSK 868

Query: 772 VSISSSDEGVTTINCRI 788
           + ++S     +T    +
Sbjct: 869 LKVNSVQGTGSTFYFDL 885



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/345 (11%), Positives = 113/345 (32%), Gaps = 30/345 (8%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-------DVSKE 298
           + I + +  +      +   +  +   N + + +  +  +  + G+ +       D+++ 
Sbjct: 202 DTISELVQKAIQFGTPWDAELQLVTAKNREIW-VRALGKAEFKEGVCVRLYGAFQDINER 260

Query: 299 ITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                          +I+ N  + I +   + +L   N + ++++      L  N +   
Sbjct: 261 KIAQLDYNVTKERFEKIVQNSAIGIILVHVDGHLLLANPASLKIFGFQEEQL--NEALKL 318

Query: 355 LLEFLRSANKLPEQLNWKT-WKENIFSVYKSSE-----THKDTWHLPNGQTLHVIVTSNP 408
                   + L E +N++          Y+           + W       L V +    
Sbjct: 319 TFRNFIHPDFLEEAINYRAQLIAGAIDSYQMEAKFYRIDRVEIWCR-----LSVSLVKGE 373

Query: 409 RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            G     I   E++T +  LE K     K      ++   G+ +   +G   + N    S
Sbjct: 374 DGIKDRIISQVEDITERKHLEFKAKEHAKRFTTAFEYSPNGMGMVSIEGDWLMVNQNLAS 433

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           ++  ++           +        +      L    I ++  E++ +  + +++   +
Sbjct: 434 IFGYKKEEFINKRS-SELTHPDDLKKDSKQLKALINLEIDTYSIEKRFVHRSGKIIHG-L 491

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           L  S++       +     ++D  +  +A     ++L +  ++ N
Sbjct: 492 LNVSVVTDEQGTPLYLIGQISDLSKRVKAEQALQKSLTEFQQLMN 536


>gi|114797754|ref|YP_761588.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
 gi|114737928|gb|ABI76053.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
          Length = 821

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/411 (24%), Positives = 178/411 (43%), Gaps = 21/411 (5%)

Query: 400 LHVIVTSNPRGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           +   ++++P  GT     +  + T +   E +  T  +     I+  +   A++    R+
Sbjct: 395 MRGSISTDPVTGTTVFGGIMMDATERKQAEDRVKTAERRLRNAIEGFNGPFALWDTRKRL 454

Query: 457 KLSNPAFRSLWKTEENRLSPGTH----IRNIAATCSRYYNESDGWDLFAAIITSF---DD 509
              N AF   +  ++      +H    I    A      +E D      A+ T       
Sbjct: 455 LYWNRAFALDFGLQDTLRPGMSHDTVVIARAGAVSMERQSEEDARTTTIALRTGRWLKMV 514

Query: 510 ERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAE-------RALTEKNEA 561
           ER +  G L  +   V E          Q         D  R+E       R  +E+ E 
Sbjct: 515 ERATPDGGLITVGIEVTENVRNEEELKKQKEKLRRAALDLERSEGHASELSRKYSEEKEK 574

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTIL 620
             +A   K++F+ ++S+ELR+PL  +IGF++++     G L +    +Y + I  S   L
Sbjct: 575 AERAALAKSAFLANMSHELRTPLNAVIGFSEIMTNELAGPLGDPSYKEYAKDILMSGQHL 634

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L+++NDILD+A ++AG M ++   I   D ++   + I  K  E  I + + ++  L   
Sbjct: 635 LDMINDILDMAKIEAGKMTISPQPIDPIDPVDAAMRMIRRKAEEKAIDLVLEAEDNLPDI 694

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD + + Q+   +LSNA+ F+ +  T+ ++  +   D  F V + G  IP +    +  
Sbjct: 695 DADHRAIRQMMLNLLSNAIKFTDRSGTITVRVEQRGTDIYFGVTDTGIGIPAEDLPRLAQ 754

Query: 741 RFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F   A        G GLGLS+ +SF  +HGG + +SS     TT+   +P
Sbjct: 755 PFEQVAKTKDRNHEGTGLGLSLTKSFAEMHGGRMLLSSIYGEGTTVAFVLP 805



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 23/149 (15%)

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI----AIFDQNRYLQFHNRSFVE 337
           V  +    GI +D ++     D++      L N         A++D  + L + NR+F  
Sbjct: 404 VTGTTVFGGIMMDATERKQAEDRVKTAERRLRNAIEGFNGPFALWDTRKRLLYWNRAFAL 463

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLP 395
            + +    L    S+D ++                  +    S+ + SE      T  L 
Sbjct: 464 DFGL-QDTLRPGMSHDTVV----------------IARAGAVSMERQSEEDARTTTIALR 506

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
            G+ L ++  + P GG I +   +T  V 
Sbjct: 507 TGRWLKMVERATPDGGLITVGIEVTENVR 535


>gi|46107708|ref|XP_380913.1| hypothetical protein FG00737.1 [Gibberella zeae PH-1]
          Length = 1370

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/677 (17%), Positives = 249/677 (36%), Gaps = 93/677 (13%)

Query: 188  LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR------ 241
            L   + +   L ++    +    + G + + N + +K  E +  +     G         
Sbjct: 365  LQKMLLMKDALLNNTQMPILAMWKDGSVTFPNTAARKLFEKDAPLDTSLNGFELMQYWHI 424

Query: 242  --KLFKEEIKKR---MISSSALEKNFCETVSTL--EHGNNKSYKIV-----RVLNSFGEA 289
              + F E +      +      E  F      +  E+ + + Y ++             A
Sbjct: 425  YSEDFSERLGTEEIPICKLLKTEMPFTGFRVGMYDENRSRRVYDVLGEAIRDDSTGEFLA 484

Query: 290  GI--AIDVSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            G+    DV+       Q+    E     I   +   +     +  + F N  F     + 
Sbjct: 485  GVVTGRDVTVMTEEITQIKERDEERFKLICDTMPQLVWTATPDGLVDFWNTRFYSYTGLA 544

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTL 400
                      +         + LPE    K WK ++    ++ +++   +      G+  
Sbjct: 545  PEDSLGKSWVNAF-----HPDDLPEAE--KRWKHSL----ETGDSYVTEYRCQSKEGEWR 593

Query: 401  HVIVTSNPRGG--------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              +  + P+                ++   +  +       +     I H    +    P
Sbjct: 594  WYLGRAMPQRNKETGKVEKWFGTCTDVHESIQTKMAMKRTRQQLLSVIAHSHVTIFTVDP 653

Query: 453  DGRIKL------SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            + R+ +       N             +  G  +  +    +    + +  +    I   
Sbjct: 654  NRRVTMLEGALIWNNTHEESHDGTRWFI--GEDMYTVFNRLTAQLADGERPEFLEPIELL 711

Query: 507  FD------------DERKSLQGTLELLSDSVLEYSIIPLPN---AQTMLTFVNVTDSVRA 551
             D            D+R      L +L     E    P  N      +   ++VT+    
Sbjct: 712  LDGKATEDLKEHGIDDRWYRTRFLTMLGKRAQE--GDPRHNTYVEGVIGVIMDVTELKIR 769

Query: 552  ERALTEKNE----------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            E+AL ++++          A ++A+ +K+ F+ ++S+E+R+P+T ++G  +LL       
Sbjct: 770  EKALEKQSKEKRKAMANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLM---GME 826

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+ +Q +YVE I +S+T LL ++NDILD + V++G + +      L+ ++ EV + +   
Sbjct: 827  LDQEQQEYVENIQSSATSLLTVINDILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFA 886

Query: 662  MHENNIRIKVISDG---KLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAAR 714
            +   N+  +             + D  R+ QI + +L+N++ F+++G    S V  K   
Sbjct: 887  VERKNLDFQSDVGDGIENDLVVIGDPGRVRQILTNLLTNSIKFTNQGYVRFSVVAEKETS 946

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            +  +  FSV+++G  I +D+ K +F  F        RR  G GLGL+I ++ ++L  G +
Sbjct: 947  ETIEVKFSVEDSGIGIQDDVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRI 1006

Query: 773  SISSSDEGVTTINCRIP 789
            ++ S     T     +P
Sbjct: 1007 TLESKVGVGTRATFWVP 1023


>gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1364

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/621 (16%), Positives = 215/621 (34%), Gaps = 79/621 (12%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y+  T       +  +     ++          ++    +  ++   L  G         
Sbjct: 269 YRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAGFVASLNQSSPWLIGG--LVMAASV 326

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +  +      +  + +E  +  Q+     ++ + + AI     +  +   N +   ++  
Sbjct: 327 LFAALLVLYFSNGLRREEVLRKQME-LAALVSHSSEAIVAETPDGRITHWNPAAEAMFGY 385

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                    + DE ++   +    P+            ++  ++   +   H  +G  +H
Sbjct: 386 ---------TADEAIDQDLTTLLSPQPYAMSEVDHADAALAGNASAAQTMRHR-DGHQVH 435

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVK------------------VQ 436
           V+ +  P         G    F +++ +V    +   L                    +Q
Sbjct: 436 VLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEHQVAERTSELVKFSVLQ 495

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYY 491
              + H    +      G + L NPA   L       +                  +   
Sbjct: 496 RAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHML 555

Query: 492 NESDGWDLFAAIIT------------------SFDDERKSLQGTLELLSDSVLEYSIIPL 533
            E  G  +   +                    S D  R  +  TL  L D   +      
Sbjct: 556 AEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVI---- 611

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +   V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   L
Sbjct: 612 ---GYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYL 668

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ S+   L       V  I  S+  LL ++NDILD + ++AG + L  +   LN L + 
Sbjct: 669 LQRSE---LPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725

Query: 654 VKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   + + +    + + V          + D  R+ Q+   ++ NA+ F+ +G  V+   
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVR 785

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
              +GD      +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    +
Sbjct: 786 RFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLV 845

Query: 766 NLHGGHVSISSSDEGVTTINC 786
            L GG + + S     +    
Sbjct: 846 ELMGGELEVESVPGRGSEFYF 866


>gi|149176849|ref|ZP_01855459.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148844286|gb|EDL58639.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 818

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 166/430 (38%), Gaps = 28/430 (6%)

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNP---RGGTIW----MFENLTVQVDLETKYNTLV--- 433
           S   H   WH  +     VI  + P   + G I        ++  Q   E   +      
Sbjct: 221 SYRVHGHIWHAESESYRPVITEAVPVFDQEGQILEWVGTVSDIHEQRMAEESLSAAEAES 280

Query: 434 ----KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +      D    G+ +   + R    N     +                +     R
Sbjct: 281 SRQKRELELIYDTAPVGMGLVDREYRYLRINDTLARINGISREAHLGRVCFELVPGIADR 340

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT---FVNVT 546
                D        + + +   K+     E     ++ Y  +   N +         ++T
Sbjct: 341 IKPLYDQVFQTGKAVKNQEVRGKTPASDKERCW--LVNYHPMTHRNGEVWGVSSIVQDIT 398

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                E AL +  +   +A+  K+ F+ ++S+E+R+P+  ++G+ D+L        N   
Sbjct: 399 ARKEMEEALRDSEQQASQANLAKSEFLANMSHEIRTPMAAVLGYADVLLGHLKDPDN--- 455

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  +  +   LL L+NDILDL+ ++AG ++++ +   L +L+ +V+  +  +  E N
Sbjct: 456 RNCVMIMKRNGEHLLELINDILDLSRIEAGKLEVDLNEASLRELVADVQTLMQVRADEKN 515

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFS 722
           + + V   G++    V D  RL QI   ++ NA+ F+ +G   ++++   D+      F+
Sbjct: 516 LMLNVKFTGQVPEKIVTDATRLRQILINLIGNAIKFTDQGEVRLVIRLLPDSDKPIIEFA 575

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  +  D  + +F  F            G GLGL+I +  + +  G + + S    
Sbjct: 576 VQDTGIGMSADQIQRLFKPFSQGDSSVTRAYGGSGLGLAISKRLVQMLKGQLKVKSEVGQ 635

Query: 781 VTTINCRIPS 790
            +    R+P+
Sbjct: 636 GSIFRIRLPA 645



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 84/290 (28%), Gaps = 24/290 (8%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
             +  E+ +     + L    S ++   +S   ++W  D  G+ +   IS+++ T     
Sbjct: 130 TKLLEEVEQRKEIERDLRWMQSRYEAFLNSTSSIIWTTDPRGNFIVPQISWQRFTGQTWD 189

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-------------------TLEHG 272
             Q        L ++  +   + S    K     V                     +   
Sbjct: 190 DHQGDGWLRALLPEDRAELAALWSKPAGKQSSYRVHGHIWHAESESYRPVITEAVPVFDQ 249

Query: 273 NNKSYKIVRVLNSFGEAGIAIDV--SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
             +  + V  ++   E  +A +   + E   + Q      I     V + + D+      
Sbjct: 250 EGQILEWVGTVSDIHEQRMAEESLSAAEAESSRQKRELELIYDTAPVGMGLVDREYRYLR 309

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N +   +  I           + +         L +Q+ ++T K       +      D
Sbjct: 310 INDTLARINGISREAHLGRVCFELVPGIADRIKPLYDQV-FQTGKAVKNQEVRGKTPASD 368

Query: 391 TWHLPNGQTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGET 439
                     H +   N    G   + +++T + ++E       +   + 
Sbjct: 369 KERCWL-VNYHPMTHRNGEVWGVSSIVQDITARKEMEEALRDSEQQASQA 417


>gi|307947441|ref|ZP_07662774.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp.
            TrichSKD4]
 gi|307769259|gb|EFO28487.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp.
            TrichSKD4]
          Length = 1749

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 103/581 (17%), Positives = 222/581 (38%), Gaps = 26/581 (4%)

Query: 223  KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
            +   + +       +     L   +         A  K   E +     G+   +  + +
Sbjct: 1178 EAVADQDTAEIIPLVSARPHLVPVDTSNLSRPDLAAFKTIAEALGARFEGDIAGFDELDM 1237

Query: 283  LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            L+  G                      ++L  L + IAI  ++R + F N + + +    
Sbjct: 1238 LDPEGILPP--------ETEPSGPIDPDLLDRLPIGIAI-ARDRDVLFANETLLSVLGYP 1288

Query: 343  LAFLATNPSNDELL------EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
                 T     E L      +    A  +   ++               +    +     
Sbjct: 1289 THRHLTEAGGLEALFAEEDEDSFPDAEGMEGTVDGTLKARRADGSLLPVDARMHSVPWNG 1348

Query: 397  GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            GQ L + +             + T     +T+   L       ++  ++GV V   +G I
Sbjct: 1349 GQGLMISIVPRAAEAVASGSVSSTELQAAQTQIAEL----DTILETATDGVLVLDRNGVI 1404

Query: 457  KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              +N +  +L+      +  G  + +  A  S          L    + S  ++ + + G
Sbjct: 1405 IKANRSAEALFNANRADM-IGVPLFDYLAPESHRGATDYLDGLVRNGVASVLNDGREVLG 1463

Query: 517  TLELLSDSVLEYSIIPL----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
             L+      L  +I  +     + +      ++T    AE  LT+       A+  K+ F
Sbjct: 1464 LLKSGGLIPLFMTIGRINHDGEDRKFCAVLRDITQWKTAEEELTQAKRQAENANSQKSDF 1523

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLA 631
            +  +S+E+R+PL  IIGF++++   + G + N +  +Y++ I  S + +++L+ND+LDL+
Sbjct: 1524 LAKISHEIRTPLNAIIGFSEVMMDERFGEIGNERYKEYLKDIRTSGSHIMSLINDLLDLS 1583

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
             ++AG + L ++ + + D++NE    +  + +   + I+      + + VAD + L QI 
Sbjct: 1584 KIEAGKLDLQFTAVSIKDIVNECVAIMQPQANRERVIIRASLPDSVPNVVADPRSLRQIV 1643

Query: 692  SKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +LSNA+ F+  G   ++  A  D G+ +  V++ G+ +      +    F        
Sbjct: 1644 LNLLSNAIKFNKSGGQAIVSTAFEDTGEVVLRVRDTGTGMSAKDLSAALEPFRQLHTARH 1703

Query: 751  RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              G GLGL + ++ +  +     I S+ +  T +    P++
Sbjct: 1704 GSGTGLGLPLTKALVEANRASFRIDSTPDQGTLVEISFPTQ 1744



 Score = 44.5 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 18/174 (10%)

Query: 197  VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
             L D L   +    +  D+L+AN +                G    LF EE +     + 
Sbjct: 1257 DLLDRLPIGI-AIARDRDVLFANETLLSVLGYPTHRHLTEAGGLEALFAEEDEDSFPDAE 1315

Query: 257  ALEKNFCETVSTLEHG------NNKSYKI-----------VRVLNSFGEAGIAIDVSKEI 299
             +E     T+            + + + +           +    +   A  ++  ++  
Sbjct: 1316 GMEGTVDGTLKARRADGSLLPVDARMHSVPWNGGQGLMISIVPRAAEAVASGSVSSTELQ 1375

Query: 300  TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
                Q+     IL   T  + + D+N  +   NRS   L+  + A +   P  D
Sbjct: 1376 AAQTQIAELDTILETATDGVLVLDRNGVIIKANRSAEALFNANRADMIGVPLFD 1429


>gi|322419044|ref|YP_004198267.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125431|gb|ADW12991.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 583

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 168/363 (46%), Gaps = 25/363 (6%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +           +  + EG+ V  P G I L NPAF+ L+  +++    G  + +I+   
Sbjct: 241 RLGAEKNRLDTILRGMGEGIMVADPQGTITLVNPAFKGLFGLQDDV--EGRQLIDISR-- 296

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                     + F  II++  +  + LQ  L    +  +    +PL     +   V V  
Sbjct: 297 -----HPALHESFRDIISTRQERIEELQ--LHSPKERSVLIHWVPLLEGVVLNGVVAVFH 349

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +   R L          ++I+  FV +VS+ELR+P+T I G+ + L    L +  S+ +
Sbjct: 350 DISDIRQL----------EKIRRDFVANVSHELRTPVTIIKGYAETLIAGALEN-PSQAA 398

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ + + +  L  L++D+L L+ +++G + L   ++ + D+   V   +  K+ E +I
Sbjct: 399 KFVKIMYSHADRLAVLISDLLTLSQLESGTIALETRSVAVYDIAEHVVALLEQKIRERSI 458

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + +       + +AD  RL Q+   ++ NA+ ++  G +V L AA D+G  + +V++ G
Sbjct: 459 GVDISGLKGAANVLADPVRLEQVIVNLVDNAVKYTPAGGSVTLTAAEDDGRVVIAVRDTG 518

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +F RF        R   G GLGLSIV+  + LHGG VS  SS    +   
Sbjct: 519 IGIPPKDLPRIFERFYRVDTARSRDEGGTGLGLSIVKHILQLHGGTVSAESS-GQGSAFF 577

Query: 786 CRI 788
             +
Sbjct: 578 VTL 580



 Score = 46.1 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 21/162 (12%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           + +  ++ R LN       A    +   +  +      IL  +   I + D    +   N
Sbjct: 218 DPELMELTRALNEMAAKTEA----QLDRLGAEKNRLDTILRGMGEGIMVADPQGTITLVN 273

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            +F  L+      L  +    +L++  R           +++++ I +  +     +   
Sbjct: 274 PAFKGLFG-----LQDDVEGRQLIDISRH------PALHESFRDIIST--RQERIEELQL 320

Query: 393 HLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYN 430
           H P  +++ +       G    G + +F +++    LE    
Sbjct: 321 HSPKERSVLIHWVPLLEGVVLNGVVAVFHDISDIRQLEKIRR 362


>gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1416

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/523 (17%), Positives = 186/523 (35%), Gaps = 43/523 (8%)

Query: 288  EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
            E  +  +    I       H   +L  +     + D+  +  F N    E+  I    L 
Sbjct: 766  EEAMQREQGLRIEAEVAKAHLETVLAGIQDQFFVLDREWHYTFVNDRVAEVVGIQKEELL 825

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                 +            P+    + + +   ++ + +    + ++    +     V   
Sbjct: 826  DRIIWELF----------PDVAKSEFYTQVHRAMAEQTVVQFEYFYPAWQRWFENRVYPF 875

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
              G +I++ E ++ +   E       +      D+    V V   +      + ++    
Sbjct: 876  GEGVSIFVTE-ISDRKQAEKALRESEEQFRNMADNAPFMVWVTDTNNYCTYLSRSWYDFT 934

Query: 468  KTEE-----NRLSPGTHIRNIAATCSRYYNESDGWDLFAA--IITSFDDERKS------- 513
               E            H  +     + +   S   + F     +   D E +        
Sbjct: 935  GHNEETSLGFGWLNAVHPEDCDEVRNIFLEASKRCEAFRMEYRLHRKDGEYRWTINAANP 994

Query: 514  ---LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
               + G  +    SV++ +                 +  R              A+ IK+
Sbjct: 995  WFGVDGQFKGYIGSVIDIT----------ERKTAEAERDRLLELEQVARTEAETANRIKD 1044

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+  +S+ELRSPL  I+G+  LL+T +     ++  + +  I  ++ +   L+ D+LD+
Sbjct: 1045 EFLAVLSHELRSPLNPILGWARLLQTREFQP--AEIKKAIATIERNAKLQAQLIEDLLDV 1102

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
            + +  G + L    + L  ++    +++       +I+I+ + D  LG  + D  RL Q+
Sbjct: 1103 SRILQGKLNLKMFPVNLVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQV 1162

Query: 691  FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
               +LSNA+ F+ +   + ++  R +     +V + G  I  +    VF  F        
Sbjct: 1163 IWNLLSNAVKFTPEEGKINIQLERIDSQAQITVSDTGKGISPEFLPHVFEYFRQADGTTT 1222

Query: 751  RR--GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPS 790
            RR  G+GLGL+IV   I LHGG +   S  +        R+P 
Sbjct: 1223 RRFGGLGLGLAIVRHLIELHGGTIWAESLGEGQGAIFRVRLPL 1265



 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 3/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A     ++ EAL + D  K  F  +VS+E R+PLT ++G  +    +    L + + + 
Sbjct: 333 QAYEEERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPLEETLANCATLLPAHEREQ 392

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E +  +   LL LVN +LD + ++AG ++ +Y    L     E+     + +    + +
Sbjct: 393 LEMVQRNGLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSAVERAGMEL 452

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V           DR+   +I   +LSNA  F+  G  + +     N    F+VK+ G  
Sbjct: 453 SVNCPSLPAPVYVDREMWEKIVLNLLSNAFKFTMTG-KIAVSLQWANDHIEFAVKDTGIG 511

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    +F RF  V  A      G G+GLS+V+  + +HGG V ++S     +     
Sbjct: 512 IPAEEIPHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQMHGGTVKVTSVLGAGSCFTIS 571

Query: 788 IPS 790
           IP+
Sbjct: 572 IPT 574



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 13/147 (8%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE------ 229
            +E+++     K L      F+ + D+  F+VW  D      + + S+   T         
Sbjct: 884  TEISDRKQAEKALRESEEQFRNMADNAPFMVWVTDTNNYCTYLSRSWYDFTGHNEETSLG 943

Query: 230  ----GIVFQKAIGESRKLFKEEI-KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
                  V  +   E R +F E   +                     +  N  + +     
Sbjct: 944  FGWLNAVHPEDCDEVRNIFLEASKRCEAFRMEYRLHRKDGEYRWTINAANPWFGVD--GQ 1001

Query: 285  SFGEAGIAIDVSKEITVNDQLTHTYEI 311
              G  G  ID+++  T   +     E+
Sbjct: 1002 FKGYIGSVIDITERKTAEAERDRLLEL 1028


>gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60]
          Length = 1520

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/659 (17%), Positives = 233/659 (35%), Gaps = 77/659 (11%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-GIVFQKAIG 238
                 + ++  +    ++  +    V   D    I W N  +++ T      V  K  G
Sbjct: 356 RAERLAQGMTADLERLALVARNTSNAVILTDPQRRITWVNDGFERITGYRHDDVLGKVPG 415

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCET---VSTLEHGNNKSYKIVRVLNSF------GEA 289
              +  K + +       AL++        ++    G     ++             G  
Sbjct: 416 ALLQCEKTDPRVIQAVHQALDRGLAFKGELLNRGRAGEEYWIEMEIQPRYDAEHRLIGFM 475

Query: 290 GIAIDVSKEITVNDQLTHTYE----ILHNLTV--AIAIFDQNRYLQFHNRSFVELWEIDL 343
            +  D+++      +L         +L  L V   IAI D++R L   N ++ ++     
Sbjct: 476 AVESDITERKNTQHRLEAALRDNDALLATLNVHGIIAITDRHRRLIEVNDAYCQITGYPR 535

Query: 344 AFLATNPSN--------DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             L   P +                      +      W+  + +  +            
Sbjct: 536 EALLGQPPSIVNSGTQSPAFWRQAWELLLAGQP-----WRGEVCNRAR------------ 578

Query: 396 NGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLETKYNTLVKVQGETID------- 441
           +G+   V  T  P     G     I +  ++T    L+T  +          +       
Sbjct: 579 DGRVYWVDTTIAPFKDADGQIDKYISIQFDITQAKTLQTNLSIARNQLLRATEVAELGVW 638

Query: 442 --HLSEGVAVFGPDGRIKLSNPAFRSLWK---TEENRLSPGTHIRNIAATCSRYYNESDG 496
              +++G  +F        + P             + L     +  + AT         G
Sbjct: 639 SWSMADGTLIFDETMNAIYAIPPEMQDPHRLYAYWHTLIHPDDVEEVDATLQETLRAGQG 698

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                       D+ + ++    +    + +  ++       +    ++T   +AE  L 
Sbjct: 699 HVCRQRFRIRVGDQERIIESAAVVEQQGIGDTLML-------VGINRDITRQRQAEATLQ 751

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               A   A++ K++F+ ++S+ELR+PL  I+G   LL  S    L  +Q+ Y     A+
Sbjct: 752 AAKLAAENANQAKSAFLANMSHELRTPLNAILGMLTLLLKS---GLTHRQADYATKSEAA 808

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL L+NDILD + ++AG M+L      L +LL ++   +++   +  + +    D  
Sbjct: 809 ARALLRLLNDILDYSKIEAGKMELETEPFSLCNLLQDLAVILSSSSRQKPVEVLFDIDPS 868

Query: 677 LGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIP 731
           L  + V D  RL Q+   +  NA+ F+ +G   + ++    +       F V++ G  I 
Sbjct: 869 LPHWLVGDSLRLQQVLINLGGNALKFTERGEVTLFIRLLAQDQQTVTLHFGVRDTGIGIA 928

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +++F+ F        RR  G GLGLSI + F+ + GG + + S     +  +  +
Sbjct: 929 PEKQRAIFSGFSQAEASITRRFGGTGLGLSISQRFVTMMGGTLQVESEPGKGSLFHFTL 987


>gi|294624628|ref|ZP_06703300.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601063|gb|EFF45128.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 667

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/498 (19%), Positives = 191/498 (38%), Gaps = 53/498 (10%)

Query: 320 AIFDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            +FD  + + +     N +F     +    L  +             N LPE    + W 
Sbjct: 1   MVFDGEQAVDYVIRTTNGAFERYTGLSPNALNVSI-----------RNLLPEHE--QEWF 47

Query: 376 ENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +    V ++    H +       +   V    V    +     +F ++T +  +E +   
Sbjct: 48  DRYGHVARTGNRIHFEMQAKALKRWYSVDAFRVGQPEQARVAILFMDITERKRVERELAE 107

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
                    D L   V V    G ++  N A+   +  + +  +         +  S   
Sbjct: 108 SEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT--------VSAWSELL 159

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVNVTDS 548
           +  D       +  S  ++R           D     +E +  P  +A      +  +  
Sbjct: 160 HPDDLPTFQFELAASLQEQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSP 219

Query: 549 VRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              E R +    E L +++            +K+ F+  +S+ELR+PLT I+G+++LL  
Sbjct: 220 DVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQ 279

Query: 597 SKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                +   Q  Y  +  I++S+     L++D+LDL+++  G ++L   ++ L + + E 
Sbjct: 280 R----VEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREA 335

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +        +  +++         + D  RL Q+   +LSNA+ F+     + +K  R
Sbjct: 336 LNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIER 395

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           D+G  + SV ++G  I  +    +F RF        R   G+GLGL+IV+  + +HGG V
Sbjct: 396 DDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQV 455

Query: 773 SISSSD-EGVTTINCRIP 789
             +S       T   R+P
Sbjct: 456 GATSGGRGKGATFTVRLP 473



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +      ++ T  
Sbjct: 94  DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVS 153

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +    +    F+ E+   +     L             G  +  ++           
Sbjct: 154 AWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRH---DGQWRWIEMTATPRYSADGR 210

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G AG + DV+++  +        E
Sbjct: 211 FIGLAGSSPDVTEQREIELAREQLLE 236



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 71/237 (29%), Gaps = 28/237 (11%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N ++++ T         +I       ++E   R                       + Y 
Sbjct: 17  NGAFERYTGLSPNALNVSIRNLLPEHEQEWFDR--YGHVARTGNRIHFEMQAKALKRWYS 74

Query: 279 I----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
           +    V        A + +D+++   V  +L  +      L   +     + D    ++F
Sbjct: 75  VDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRF 134

Query: 331 HNRSFVELWEIDL------AFLATNPSNDELLEFLRSANKLPEQLNWKTW--KENIFSVY 382
            N ++ E + +D+      A+      +D        A  L EQ   +           +
Sbjct: 135 VNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQW 194

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +  E      +  +G+ +          G      ++T Q ++E     L++ +   
Sbjct: 195 RWIEMTATPRYSADGRFI----------GLAGSSPDVTEQREIELAREQLLESERSA 241


>gi|138894502|ref|YP_001124955.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247897|ref|ZP_03146599.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. G11MC16]
 gi|134266015|gb|ABO66210.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212681|gb|EDY07438.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. G11MC16]
          Length = 738

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 146/767 (19%), Positives = 292/767 (38%), Gaps = 67/767 (8%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
           R+  +  + V         + ++L+ Y  +   +    ++ +   E  ++     +  ++
Sbjct: 8   REEQNSTQDVRLLEEENRRLKERLNSYSIIFERSLDAIVILNKNGEFVDVNEAACKLFEM 67

Query: 106 PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF--DLVAETQNDCAIKIEGRVSGSC 163
            + D    SF ++L+      L      L+K G SF  +L+ +  +D    +E   S   
Sbjct: 68  DKFDLIGRSFSSFLELVPPDILLFQRSMLQKFG-SFSDELLIKLPDDKVKHVE--FSMKK 124

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
                  L  +    A   L+ +++ +   +F+ +F+     +   D+ G  +  N ++ 
Sbjct: 125 DVFNEFDLVMMRDVSAHKALERERIIHEF-LFRDVFNRAVDGIVIFDEFGRFIDVNPAFS 183

Query: 224 KNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
            +   E      + FQ+ +        +E  + +           E       G  K ++
Sbjct: 184 MSLNLEKGKLLNLSFQQFVARE---CADEFARLLSEVKEKGTAKGELSLVRLDGTVKMFE 240

Query: 279 IVRVLNSFGEAGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHN 332
           +    N +    +AI  DV++   +  +L  + E    I      AI I+D   Y+   N
Sbjct: 241 LTATSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQAHEAIIIWDDFGYILNAN 300

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-- 390
            +    +E+ L  L      D  +++     K             IFS ++     +D  
Sbjct: 301 PAASRTFELPLNLLVRRNLLD-FVQYGDEKVK------------RIFSEFRRKGEIRDEL 347

Query: 391 TWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           T+H+PNG+   +  T       G  + +F N++ +  +E +     +      DH  +G+
Sbjct: 348 TFHMPNGEDKQLEFTMKKGAIDGYHLTIFRNVSERRKIERELRESEQKFRSIFDHAMDGI 407

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS- 506
            ++    RI  +NP     +   +  L   T +  +     R  N+       A   +  
Sbjct: 408 LLWDEKHRIIDANPIACEFFSATKEALLGQTVMELVPERARRQLNKLFVQCERAGEASGE 467

Query: 507 --FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             F DE K      E + +  L+  +IP      M+ F +VT+    E  L + +     
Sbjct: 468 VEFSDEGK------EKIVEFSLKKEVIP---GVGMMRFRDVTERKEMELQLRKSDTLNVV 518

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
                      +++E+R+P+T + GF  LL+ S  G      S Y   I +    + +++
Sbjct: 519 G-----ELAAGIAHEIRNPMTALKGFIQLLQGSVGGD----YSMYFNVIMSELKRIESII 569

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            + L LA   A    + Y    +  ++ +    I+ +   +N++I    +  L     + 
Sbjct: 570 TEFLVLAKPQA----VQYKQNDICKIMQDTIDLISAQAMMHNVQIIADFERGLPPVYCEP 625

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            +L Q+F  IL NA++   KG  + ++ AR       S+ + G  IP+D  K +   F  
Sbjct: 626 NQLKQVFINILKNAIEVMPKGGDITVRIARTGRHVRISITDQGCGIPKDKIKKLGEPFY- 684

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                + RG GLGL +    I  H G + + S     TT +  +P +
Sbjct: 685 ---TTKERGTGLGLMVSYKIIEEHRGKIDVESEVGVGTTFHITLPIE 728


>gi|330969226|gb|EGH69292.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 576

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/523 (22%), Positives = 210/523 (40%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+  
Sbjct: 342 RDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +    +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L    
Sbjct: 402 LLIVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRL 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VPASQAGLIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|33592925|ref|NP_880569.1| virulence sensor protein [Bordetella pertussis Tohama I]
 gi|34978356|sp|P16575|BVGS_BORPE RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33572573|emb|CAE42160.1| virulence sensor protein [Bordetella pertussis Tohama I]
          Length = 1238

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 162/387 (41%), Gaps = 12/387 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TE 470
            +++   +  +   E   N  ++     ID     + V   +GR+ L N A+   +  T 
Sbjct: 560 IVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTA 619

Query: 471 ENRLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +  L       N+      +R  +E     + A     F+D   +L G    +    + Y
Sbjct: 620 DAVLGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRFEDRDVTLHGRTRHVYQWTIPY 679

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +  ++++T+     R L +  E+   A+  K +F+  +S+E+R+P+  II
Sbjct: 680 GDSLGELKGIIGGWIDITERAELLRKLHDAKESADAANRAKTTFLATMSHEIRTPMNAII 739

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L           +QS  ++    S+  LL L+ DILD+A ++AG   L      L 
Sbjct: 740 GMLELALLRPTDQEPDRQS--IQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALR 797

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L     +       +  I + + +D   +   + D  R+ Q+ S ++ NA+ F+++G  
Sbjct: 798 VLPEGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV 857

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIV 761
           V+   AR +GD     FSV + G  I E   + +F  F       +     G GLGLSI 
Sbjct: 858 VLAVTARPDGDAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSIS 917

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              + L GG + + S+    TT++  +
Sbjct: 918 RRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 12/149 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           +  ++ +     + L++ +   +VL D     ++ RD+ G +L  N +Y      T   V
Sbjct: 563 LRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAV 622

Query: 233 FQKAIGESRKLFKEEIKKRM------ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
             K I E+  +    + + M        ++  E  F +   TL       Y+        
Sbjct: 623 LGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRFEDRDVTLHGRTRHVYQWTIPYGDS 682

Query: 287 -----GEAGIAIDVSKEITVNDQLTHTYE 310
                G  G  ID+++   +  +L    E
Sbjct: 683 LGELKGIIGGWIDITERAELLRKLHDAKE 711


>gi|166711696|ref|ZP_02242903.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1364

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/624 (17%), Positives = 222/624 (35%), Gaps = 81/624 (12%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y+  T       +  + +   ++          +++   +  +    L  G         
Sbjct: 269 YRSGTPAIDSALRPPVVKLLPMYGRTWVITAHPTASFIASLNQNSPWLIGG--LVMAGSV 326

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +  +      +  + +E  +  Q+     ++ + + AI     +  +   N +   ++  
Sbjct: 327 LFAALLVLYFSNGLRREEVLRKQME-LAALVSHSSEAIVAETPDGRITHWNPAAEAMFG- 384

Query: 342 DLAFLATNPSNDELLEFLRS-ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
              + A    + EL   L   A  +PE        ++  +   ++     T    +G  +
Sbjct: 385 ---YTAEEAIDQELTMLLAPQAYAMPE-------IDHADAALAANAWAAQTMRHRDGHQV 434

Query: 401 HVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVK------------------V 435
           HV+ + +P         G    F +++ +V    +   L                    +
Sbjct: 435 HVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEHQVAERTSELVKFSVL 494

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRY 490
           Q   + H    +      G + L NPA   +       +                  +R 
Sbjct: 495 QRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARM 554

Query: 491 YNESDGWDLFAAIIT------------------SFDDERKSLQGTLELLSDSVLEYSIIP 532
             +  G  +   +                    S D  R  +  TL  L D   +     
Sbjct: 555 LADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVI--- 611

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +   V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   
Sbjct: 612 ----GYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLY 667

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ S+   L       V  I  S+  LL ++NDILD + ++AG + L  +   LN L +
Sbjct: 668 LLQRSE---LPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFD 724

Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            + + + + +    + + V          + D  R+ Q+   ++ NA+ F+ +G  V+  
Sbjct: 725 NIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSV 784

Query: 712 AARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
               +GD      +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    
Sbjct: 785 RRFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRL 844

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I L GG + + S     +     I
Sbjct: 845 IELMGGELEVESVPGRGSEFYFVI 868


>gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 611

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 164/379 (43%), Gaps = 21/379 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L +       H+ + ++    +G ++  +PA  SL     + L        +  
Sbjct: 203 EDRYRLLAR-------HMGDVISRHRRNGAVQFISPAAESLLGVPVSELQDHGLFDRVHV 255

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKS-----LQGTLELLSDSV-LEYSIIPLPNA--- 536
                Y  +           S +   +       +    L  D + +E    PL ++   
Sbjct: 256 ADRPAYLTTLAAAALGKGAQSVEFRLRREAASDARFEAHLSGDFIWVEMRCQPLESSSPA 315

Query: 537 --QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + +     VTD  + E AL     A  +AD  K  F+  +S+ELR+PL  IIGF++++
Sbjct: 316 EPEVVAVMREVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSEMI 375

Query: 595 KTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                  L++ ++ +Y + I+ S   LL++VN ILD++ +++G  ++        ++L  
Sbjct: 376 VQEATLPLDATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLN 435

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               +A K  +N I +       L   + D +   QI   ++SNA+ F+ +G  V + A 
Sbjct: 436 GCNLLALKARDNGIELVTRVPENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTISAR 495

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
            +    +  V ++G  I ++  K + + F         +  G GLGLSIV++ + LH G 
Sbjct: 496 VEGARMVLRVMDDGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVELHRGE 555

Query: 772 VSISSSDEGVTTINCRIPS 790
           + + S  E  TT+   +P 
Sbjct: 556 IDVQSKVEEGTTVTVMLPL 574


>gi|251796378|ref|YP_003011109.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544004|gb|ACT01023.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 486

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 165/401 (41%), Gaps = 28/401 (6%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V + S+   G +   F ++T Q+  L    N   +     +  + + V  F  DGR+ L
Sbjct: 101 RVQIRSSDEIGDLAKTFNHMTEQLGTLIDDLNHEKEHLSSILRSMGDAVITFDADGRVIL 160

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +NP    L     + L               +       D F  ++ S  D    +Q   
Sbjct: 161 TNPPGHMLVSRW-SDLEMDIDWEE-EEAPPFHDVPGPLRDTFQRVMHSGRDCTNKVQ--- 215

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             + ++V    + PL N   +   V V  +V  E  L          ++++  FV +VS+
Sbjct: 216 --VINNVWSVVMAPLQNEGVVRGAVAVIRNVTEEHKL----------EKLRRDFVANVSH 263

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL+ + G+++ L    + S   ++ + V+ I   S  +  LVND LD+A ++AG +
Sbjct: 264 EIRTPLSMLQGYSEALLDDIVAS-PEERKELVQVIYDESLRMGRLVNDFLDMARMEAGHV 322

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
           +L+     L +++  V +       E N+ +         +   AD  R+ Q+ + ++ N
Sbjct: 323 ELSLQEFDLRNVIRRVHRKFQVYAKERNVSLNADLPDTPLAVHEADEDRIEQVLTNLMDN 382

Query: 698 AMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           A+  +  G ++ +                V + G  IP +    +F RF       +R  
Sbjct: 383 ALRHTPAGKSIKIAGQTATINNLKFVKLIVADEGQGIPSEDVPYIFERFYKADKARKRGA 442

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLGL+IV++ I  H G + + S     TT    +P +
Sbjct: 443 SGGTGLGLAIVKNIITQHNGRIEVDSVLGKGTTFTLLLPVE 483



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 11/134 (8%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +N +  H   IL ++  A+  FD +  +   N             L +  S+ E+    
Sbjct: 130 DLNHEKEHLSSILRSMGDAVITFDADGRVILTNP--------PGHMLVSRWSDLEMDIDW 181

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMF 416
                 P        ++    V  S     +   + N     V+      G   G + + 
Sbjct: 182 EEEEAPPFHDVPGPLRDTFQRVMHSGRDCTNKVQVINNVWSVVMAPLQNEGVVRGAVAVI 241

Query: 417 ENLTVQVDLETKYN 430
            N+T +  LE    
Sbjct: 242 RNVTEEHKLEKLRR 255


>gi|312899665|ref|ZP_07758989.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|311293171|gb|EFQ71727.1| PAS domain S-box [Enterococcus faecalis TX0470]
          Length = 609

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 157/387 (40%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L+ +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 234 GQLAETFNQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLN 293

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   +  GT +  +      Y       +    +I     +R+  Q  +       +++
Sbjct: 294 VKNENV-IGTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMII------WVDF 346

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           ++I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 347 TMIRRESGFITGLVCVLHDVTEQE-----------KNERERREFVSNVSHELRTPLTSMR 395

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L      +       +++     +  ++ ++ND+L+L+ +D+G   L    +  N
Sbjct: 396 SYIEALSEGAWEN-PEIAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFN 454

Query: 649 DLLNEVKQSIATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   + N +I+     +      D  +++Q+   IL+NA+ +S  G 
Sbjct: 455 ELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGG 514

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            +  +    + + +FS+ + G  IP+     VF RF        R   G GLGL+I +  
Sbjct: 515 VITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEV 574

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G + + S++   +T    +P +
Sbjct: 575 IRAHNGSIWVESTEGEGSTFYISLPYE 601


>gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
 gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
          Length = 725

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 119/247 (48%), Gaps = 10/247 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                  L        +A++ K+ F+ ++S+E+R+P+  IIG   LLK +    L+ +Q 
Sbjct: 176 MREYNAELKSAKMQAEQANQKKSEFLANMSHEIRTPMNGIIGMASLLKGT---PLDEEQR 232

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +++E +  SS  LL+++NDILD + ++AG ++L+   + L +L  +++     +  E  +
Sbjct: 233 EFIEMLETSSLSLLDIINDILDFSKIEAGKLELDSVELNLFELCKDIEHLFRLRTKEKGL 292

Query: 668 RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFS 722
             +   D  L    V D  RL Q+   ++ NA+ F+  G   V ++   + GD     F 
Sbjct: 293 EFECGLDQNLTPLLVGDAPRLRQVMINLVGNAVKFTQSGKVSVSIRQVAEAGDNITVTFE 352

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IP D  K+VF +F            G GLGL+I    + L GG + + S +  
Sbjct: 353 VEDTGIGIPADKLKTVFEKFEQADGSMSRNFGGTGLGLAISSQIVELMGGEIEVESREGE 412

Query: 781 VTTINCR 787
            +     
Sbjct: 413 GSRFFFT 419


>gi|221211839|ref|ZP_03584817.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221167924|gb|EEE00393.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 767

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/502 (20%), Positives = 191/502 (38%), Gaps = 32/502 (6%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L+ L   +   D N  L + N +   L        A     D L    R   ++ 
Sbjct: 128 QFEALLNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRV- 186

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--------RGGTIWMFEN 418
                 +  E+     +++   +       G+ + V  T+ P         G  + + + 
Sbjct: 187 ----QTSALEHALGGTRTT-CERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDA 241

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
              +   +        V         + +     D RI   NPA + ++  +E       
Sbjct: 242 SADRARADAARVRRAVVDAS-----PDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRR 296

Query: 479 HIRNIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELLSDSVLEYSII 531
               IA    + +     +D    I+          D  R         +     +   +
Sbjct: 297 FDSLIAMRWLKRHPLVQTFDHLREIVGPADLLCVRRDGGRFRATVAARPVRGEARDGVAL 356

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +   +T         + R+ R+  +  E    ++ +K+  +  VS+ELR+PL  I G+ 
Sbjct: 357 SITLRETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWI 416

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L+ S   +L   + Q ++ I  S+  L  +V DILD +++  G ++L+   + +  L 
Sbjct: 417 EVLRNSGDDAL---RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLF 473

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V  +  T      I ++  S         D +RL Q+ S ++SNA+ F+  G  V + 
Sbjct: 474 ADVVAAFPTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVS 533

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            A D+   + +V + G  I  +    VF+ F          RRG+GLGLSIV   + LHG
Sbjct: 534 VAHDDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHG 593

Query: 770 GHVSISSSD-EGVTTINCRIPS 790
           G V + S+     TT   ++P+
Sbjct: 594 GTVVVDSAGRNRGTTFTVKLPA 615



 Score = 44.2 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 29/216 (13%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNT-ETEGIVFQKAIGESRKLFKEEIKKRMI 253
           F+ L ++L   V   D  G + + N +              +A+ +  +L   + ++   
Sbjct: 129 FEALLNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQT 188

Query: 254 SSSALEKNFCET---VSTLEHGNNKSYKIVRVLNSFGEAGIAID--------VSKEITVN 302
           S+         T      L     +   +        +A   +D         S +    
Sbjct: 189 SALEHALGGTRTTCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 248

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA--------------FLAT 348
           D       ++     A+   D++  +   N +   ++  D                +L  
Sbjct: 249 DAARVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKR 308

Query: 349 NP---SNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           +P   + D L E +  A+ L  + +   ++  + + 
Sbjct: 309 HPLVQTFDHLREIVGPADLLCVRRDGGRFRATVAAR 344


>gi|186683715|ref|YP_001866911.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466167|gb|ACC81968.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1504

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/651 (17%), Positives = 243/651 (37%), Gaps = 52/651 (7%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
             ++       + L         + DS    +      G +L+ N       E + +    
Sbjct: 717  RDITVRQQTEEALRRSEEFKNRILDSSSDCIKVLSLDGRLLYMNTGGLCLMEIDDLNSYL 776

Query: 236  AIGES---RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFGEAG 290
                       ++++ ++ + ++ A E +             K +++V   +L++ G+  
Sbjct: 777  NTEWLCFWSGSYRQQAEQALAATKAGEISIFSGYCPTVKSTPKWWEVVVSPILDASGQLE 836

Query: 291  ----IAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEID 342
                I+ D++        L  +   L          +  +D  R     +  +  L+  D
Sbjct: 837  RILLISRDITDRKKTELLLQQSEARLKLAYKATRSGLWDWDIIRNSAHISEEYCHLFGFD 896

Query: 343  LAFLATNPSNDELLEFLRSANKLP--EQLNW--KTWKENIFSVYKSSETHKDTWHLPNGQ 398
                  + + +  L  L   ++    E +N   +  +E     ++        W    GQ
Sbjct: 897  PT--TKSITYENWLSCLHPDDRTSTNETVNRTIQQQQEGYEDDFRILHPDGIRWLAAKGQ 954

Query: 399  TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
              +  V +  R   +   +++T +  +E +     +      + + + V    P+GR+  
Sbjct: 955  VFYDTVGNAVR--MLGNVQDITERKQVEEELRQSEERYRCLAELIPQLVWTANPEGRLLD 1012

Query: 459  SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
             N  +             G  +     +  R     +   +     +    +  S Q   
Sbjct: 1013 VNQRWLEFT---------GLTLEQAHTSGWREVVHPEDVLILVKEWSKAVQQGTSYQAEG 1063

Query: 519  ELLS-DSVLEYSI---IPLPNAQTMLTFVNVTD-SVRAERALTEKNEALRK--------- 564
             +   D V  + +   IP  + Q  +     +   + A++ L  + + L +         
Sbjct: 1064 RMRRADGVYRWHLHQAIPQKDRQGEIVKWFGSATDIEAQKQLEVERDRLFQLEQAARAEA 1123

Query: 565  --ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              A+ IK+ F+  +S+ELRSPL  I+G+T +L++ K     +K +Q +  I  +  +   
Sbjct: 1124 ERANRIKDEFLAILSHELRSPLNPILGWTKMLQSRKFN--ETKTAQALASIERNVKLQTQ 1181

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            L++D+LD+A +  G + L+ + + L  ++     ++ T     +I++  +    +G    
Sbjct: 1182 LIDDLLDIAKILRGKLSLDVTPVNLLFVIESAIDTVNTAAIAKSIQLHPVL-PNIGQVSG 1240

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            D  RL QI   +LSNA+ F+ KG  V ++  R +      V + G  I  +    +F  F
Sbjct: 1241 DSNRLQQIVWNLLSNAIKFTPKGGRVEIRLERVDEQAHIIVSDTGKGINPEFLPHIFESF 1300

Query: 743  VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
                     +  G+GLGL+IV   +  HGG ++  S  EG   T   ++P 
Sbjct: 1301 RQEDVSITRKYGGLGLGLAIVRQLVEAHGGTITADSPGEGLGATFTVQLPL 1351



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/442 (13%), Positives = 138/442 (31%), Gaps = 35/442 (7%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI--P 106
                ++ E     +E+C         L+ +   T  W+ +         L     +   
Sbjct: 324 QQAQHELKERQQVEAELCQSEEHLRLALSASRMGTWNWNIQTGKITWSDNLEALFGLQPG 383

Query: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS----FDLVAETQNDCAIKIEGRVSGS 162
           + D     F   +      ++     +    G+     F +V           +G+V   
Sbjct: 384 EFDGSFEMFAARVHPEDRDRVLATVNRAVATGEEYDIEFRVVYPNGTIRWALSQGKVFYD 443

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANIS 221
               + + + GI  ++ E     + L      F+ L +++D + W R+     + + + +
Sbjct: 444 QHG-QPMQMAGIDIDVTERKRSAEALRESEERFRQLAENIDAVFWIREVSENRVSYVSPA 502

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKS- 276
           Y++          +           E ++    +    +   K   E    L  G+ +  
Sbjct: 503 YERLWGLNSEELYQGQQSWIDRIHPEDREATQKAFHEKAVAGKFDEEYRVILPDGSIRWV 562

Query: 277 ----YKIVRVLNSFGE-AGIAIDVSKE----ITVNDQLTHTYEILHNLTVAI----AIFD 323
               + +          AGIA D+S        + +        + N+        A+ +
Sbjct: 563 HDRCFGLRDKTGEIYRFAGIAEDISARKHSLAALQESEERFRTSVENMLDCFGVYRAVRN 622

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDE-----LLEFLRSANKLPEQLNWKTWKENI 378
           +   +      +V     D A L    + ++     L E L S        ++    E  
Sbjct: 623 EQGQIVDFVTEYVN----DAACLNNQMTYEQQIGRGLCELLPSHRHSGLFDDYCQVVETG 678

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
            ++ K S  ++D +          I  +    G +  + ++TV+   E       + +  
Sbjct: 679 QALIKDSLVYEDEYGEQRLVKAFDIRVAKFGDGFVATWRDITVRQQTEEALRRSEEFKNR 738

Query: 439 TIDHLSEGVAVFGPDGRIKLSN 460
            +D  S+ + V   DGR+   N
Sbjct: 739 ILDSSSDCIKVLSLDGRLLYMN 760



 Score = 41.5 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 15/151 (9%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NT 226
            G   ++ E     ++L      ++ L + +  LVW  +  G +L  N  + +        
Sbjct: 968  GNVQDITERKQVEEELRQSEERYRCLAELIPQLVWTANPEGRLLDVNQRWLEFTGLTLEQ 1027

Query: 227  ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLN 284
                   +    E   +  +E  K +   ++ +            G  +   ++ +   +
Sbjct: 1028 AHTSGWREVVHPEDVLILVKEWSKAVQQGTSYQAEGRMRR---ADGVYRWHLHQAIPQKD 1084

Query: 285  SFGEA----GIAIDVSKEITVNDQLTHTYEI 311
              GE     G A D+  +  +  +    +++
Sbjct: 1085 RQGEIVKWFGSATDIEAQKQLEVERDRLFQL 1115


>gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1364

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/621 (16%), Positives = 215/621 (34%), Gaps = 79/621 (12%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y+  T       +  +     ++          ++    +  ++   L  G         
Sbjct: 269 YRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAGFVASLNQSSPWLIGG--LVMAASV 326

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +  +      +  + +E  +  Q+     ++ + + AI     +  +   N +   ++  
Sbjct: 327 LFAALLVLYFSNGLRREEVLRKQME-LAALVSHSSEAIVAETPDGRITHWNPAAEAMFGY 385

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                    + DE ++   +    P+            ++  ++   +   H  +G  +H
Sbjct: 386 ---------TADEAIDQDLTTLLSPQPYAMSEVDHADAALAGNASAAQTMRHR-DGHQVH 435

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVK------------------VQ 436
           V+ +  P         G    F +++ +V    +   L                    +Q
Sbjct: 436 VLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEHQVAERTSELVKFSVLQ 495

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYY 491
              + H    +      G + L NPA   L       +                  +   
Sbjct: 496 RAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHML 555

Query: 492 NESDGWDLFAAIIT------------------SFDDERKSLQGTLELLSDSVLEYSIIPL 533
            E  G  +   +                    S D  R  +  TL  L D   +      
Sbjct: 556 AEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVI---- 611

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +   V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   L
Sbjct: 612 ---GYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYL 668

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ S+   L       V  I  S+  LL ++NDILD + ++AG + L  +   LN L + 
Sbjct: 669 LQRSE---LPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDN 725

Query: 654 VKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   + + +    + + V          + D  R+ Q+   ++ NA+ F+ +G  V+   
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVR 785

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
              +GD      +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    +
Sbjct: 786 RFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLV 845

Query: 766 NLHGGHVSISSSDEGVTTINC 786
            L GG + + S     +    
Sbjct: 846 ELMGGELEVESVPGRGSEFYF 866


>gi|197124838|ref|YP_002136789.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196174687|gb|ACG75660.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 461

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 124/242 (51%), Gaps = 4/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +    L++ D +K++F+  +S+ELR+PLT++IG+++++     G L ++Q +Y+  
Sbjct: 203 QKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGI 262

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      LL L+  ILD++ ++AG ++L  S +    L+ +   ++     +  +++   
Sbjct: 263 IMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKKGLKVSCD 322

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIP 731
           +   L    ADR +L Q    + SNA+ F+  G ++ + A           V ++G  IP
Sbjct: 323 TTP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVVDSGIGIP 381

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+    VF+ F        R   G GLGL+IV+SF+  HGG + + S+    +     +P
Sbjct: 382 EEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGSVFTVLLP 441

Query: 790 SK 791
            +
Sbjct: 442 IR 443


>gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 669

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/533 (19%), Positives = 215/533 (40%), Gaps = 78/533 (14%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L      + N    I +F     +   NR  V+ +    A L +    +     LR+  +
Sbjct: 17  LQIYEAAIRNANDIIILFSSQGNILEVNRKAVDTYGYTEAELLSKNIFE-----LRNRER 71

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTS-----NPRGGTIWMFEN 418
           +   +         F   KS +   +T H   +G +  V V S     +     + +  +
Sbjct: 72  IELAIMQ-------FEKAKSGDVEFETIHFKSDGTSFPVEVKSIGIEISNDRFVLSIIRD 124

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ ++  E +   L       +++  + +     DG I   N    +++  ++  +  G 
Sbjct: 125 ISNRMKSEAEIRGL----ASLVENTEDAIIGKTLDGIITSWNIGAENIYGYKKEEV-IGK 179

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSII--PLPN 535
           HI  I         +    D +  I    + ER +  +      +  +++ SI   P+ +
Sbjct: 180 HISIII-------PDEKINDFYEIIKKIKNGERVRGFESKRRKKNGQLIDVSITVSPIYD 232

Query: 536 AQTM-----LTFVNVTDSVRAERALTEK----------------------------NEAL 562
            +           ++T++ + E+ L +K                             E  
Sbjct: 233 FEGNLIGASNITRDITENKKVEKELRDKYEEISALYEELIAIEEELRSNYQELEKAKEEA 292

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            KA++ K+ F+ ++S+E+R+P+  IIG  DLLK   +  LN+ Q +Y++ +S SS +LL 
Sbjct: 293 DKANKAKSEFLANISHEIRTPMNGIIGIIDLLK---VTELNNNQKEYLDMLSNSSRLLLG 349

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           ++N ILD++ +++G  +L      +   L+ + + ++    + N+ +    D  +    +
Sbjct: 350 ILNTILDISKIESGKFELILKPFNMKKTLDRITKELSIACSKKNLEVFYYIDPYINFDLI 409

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCK 736
            D  RL Q+   I++NA+ F+  G  ++ K  + N         FSVK+ G  I E+   
Sbjct: 410 GDEIRLNQVLINIINNAIKFTEMG-QIMFKVRKLNTTNNKLTLEFSVKDTGIGIKEEFKN 468

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +F +F+     +  +  G GLGL+I +    L  G +   S +   +T    
Sbjct: 469 DIFKKFIQQDMTYTKKYDGTGLGLAISKDIAKLMNGDIWFESIENKGSTFYFT 521


>gi|209809192|ref|YP_002264730.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010754|emb|CAQ81147.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 943

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 167/395 (42%), Gaps = 34/395 (8%)

Query: 423 VDLETKYNTLVKVQGETI-------------DHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           + L  +    + ++ E +             +H  + + +   +G +  +N +F +L   
Sbjct: 251 LQLRERLQQTLIIKRELVNSEKEKSKLALVAEHAHDAILITDNNGMLTWANQSFSTLSGF 310

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           + N +                    D     +A I         L    +  S+  +  S
Sbjct: 311 QLNEVLGKKP----GDLLQGENTSKDDIARISAAIKKGAAIESELINYHKDGSEYWIGMS 366

Query: 530 IIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I P  N+     Q +    ++T     E  L    E    +++ K++F+  +S+ELR+PL
Sbjct: 367 ITPTFNSDGSVEQFIAVERDITKRKALEIDLFNAAEQAEVSNKAKSTFLATMSHELRTPL 426

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G   +++++     + +Q + +  +  S   LL+L+NDILD + ++   ++L+   
Sbjct: 427 NGILGMAQIIESNIK---DPEQHKQINVLLESGDHLLSLLNDILDFSKIEQNKLELDNLP 483

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
               D+++ +  +      +  + + +      G+    D+ R+ QI   ++SNA+ F+ 
Sbjct: 484 FDFKDVISPIANTYIPICEDKGLELIIHDQINAGAVFNGDKPRIRQIIFNLISNAVKFTH 543

Query: 704 KGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGL 756
           KGS + L       A+     +  ++++G  I E+    +F+ F+    A   Q  G GL
Sbjct: 544 KGS-ITLTFSHTLTAKSKQGLLIKIEDSGIGIREERLDYIFDPFIQAESATTRQYGGTGL 602

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL+IV+  ++   G++S+ S +   T     +P +
Sbjct: 603 GLAIVKQLVDAMQGYISVKSVEGEGTGFTIMLPLE 637


>gi|15894978|ref|NP_348327.1| sensor histidine kinase [Clostridium acetobutylicum ATCC 824]
 gi|15024665|gb|AAK79667.1|AE007679_13 Sensory histidine kinase (with HAMP and PAS domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325509115|gb|ADZ20751.1| Sensory histidine kinase (with HAMP and PAS domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 566

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/399 (21%), Positives = 164/399 (41%), Gaps = 42/399 (10%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYN-TLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V S    G +   F N+  ++    + +    K     +  +  GV       +I +
Sbjct: 202 RVNVESRDEIGQLGKTFNNMAGRLQSTIRESVEKQKKLEAILVSMDSGVIAVDRKHKIIM 261

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW----DLFAAIITSFDDERKSL 514
            NP    ++  ++N       I      C R Y   D +    + +A I TS+  ER   
Sbjct: 262 INPYAEKIFGIDKNI------IGQSLMDCIRNYEFEDIFNKRAEGYAEIKTSWPKERNLR 315

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             T ++++               T+    ++TD  + E               ++  FV 
Sbjct: 316 IKTADIING---------YECIGTVAVVQDITDIRKLE--------------NMRTQFVA 352

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+EL++PLT+I GF + L+       ++++ ++++ I      L  L++DIL L+ ++
Sbjct: 353 NVSHELKTPLTSIKGFAETLR---YVEDDNQKGEFLDIIDDEVDRLTRLISDILTLSDIE 409

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
                +      +N+++  V   +       NI +KV  +  + + + D  +  Q+   +
Sbjct: 410 IRPF-MKKEEFDVNEIIKAVCGLLEKSASRKNISLKVFGE-DVPNLIGDNDKFKQMIINL 467

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
           + NA+ ++  G  V +       D I SVK+NG  IP++  + +F RF            
Sbjct: 468 VDNAIKYTEAGGEVSVYKKYTKDDVIISVKDNGVGIPKEHLQRIFERFYRVDKARSRANG 527

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+IV+  +    G ++I S     T     IP K
Sbjct: 528 GTGLGLAIVKHIVLNFNGSINIESKLGVGTEFIITIPYK 566


>gi|255011870|ref|ZP_05283996.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 3_1_12]
          Length = 629

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/505 (19%), Positives = 205/505 (40%), Gaps = 32/505 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + +       +L    +A   +D           +  +  +  A +       E+ +F
Sbjct: 5   EKLKEDYQKITSVLAGHQIAFWEYDIPTGECNFTDEYFSILGLKEAGIV----FREINDF 60

Query: 359 LRSANKLPEQLNWKTWKENIFS--------VYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
            R A+   +  +++T    +          V +    H +T  L +    +     N   
Sbjct: 61  YRFAHPD-DVTSYQTAFNRMLESDTKTSQIVVRCLGEHGETIWLEDNFIAYKKNKENGSD 119

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             I    N+T + + E +   L +   + I+ L E          I + +  F       
Sbjct: 120 KIIAYTANITSRCEKEVQIRQLEERNRKIIEALPE---------FIFIFDDNFFITDVLM 170

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLSDS-VLE 527
                    +  +     R    ++  +LF + I       + K ++  L++ +     +
Sbjct: 171 APDTELLHPVEVLKGADGRSIYSAEVSELFISSIRECLKSGKLKEIEYPLDVETGRHYFQ 230

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             I P    + +    ++ D +R  + L +      +AD +K+ F+ ++S+E+R+PL  I
Sbjct: 231 ARIAPFEGNKVLALIHDIGDRIRRSQELLDAKRRAEEADRMKSLFLANMSHEIRTPLNAI 290

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     +
Sbjct: 291 VGFSEIIA---LTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEI 347

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           + L +EV +    KM +  + + VI          DR R+ Q+    LSNA+  + +GS 
Sbjct: 348 SGLADEVYKVHRLKM-KKGVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIEGS- 405

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           +     ++     F V + G  I ++    +F RF       Q  G GLGL I +S +  
Sbjct: 406 ITFGLVKEEEWVKFYVADTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVER 463

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
            GG + + S  E  +T    +P+K+
Sbjct: 464 LGGRIEVESELEKGSTFTLYLPNKQ 488


>gi|218887461|ref|YP_002436782.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758415|gb|ACL09314.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1499

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 145/824 (17%), Positives = 280/824 (33%), Gaps = 108/824 (13%)

Query: 36   TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
               + ++  I QR +    +  + + L E           L  +     VW       E+
Sbjct: 507  ARCMSVLQDITQREAARMALRHSEARLQEAQQIARMGSFELHMDTGA-FVWSAGLY--EM 563

Query: 96   IG-QLHQRIDIPQTDTDLLSFEN--WLKFHHYIKLSKATEKLRKE------------GQS 140
            +G         P     + + E   W   H  I   +   +L++             GQ 
Sbjct: 564  LGHDPALPPPPPAEVFAIHAPEELDWYHEHVAIMSDEPVTELQRVFPYRTLGGRQGWGQF 623

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
               VA   +   +  +G             +  +            +L+    + ++   
Sbjct: 624  RCRVARGPDRLPLHAQGT---------FQDITSLREAELALRDSEARLNEAQFIARMGSY 674

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR-----MISS 255
            S++       + G+  W+     +  + +        GE+ +    E            +
Sbjct: 675  SVNL------RDGEAFWS-PGLFRLLDLDPHDGPLVPGEAFRRHAPEAAPWFEAFLATPA 727

Query: 256  SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-------DVSKEITVNDQLTHT 308
               E     +   +     + +  + ++   G  G+         D++        L  +
Sbjct: 728  DRPESTERRSFPYITATGRRGFGRLHMMARHGADGLPEHIRGTFQDITPLHEAEQALRES 787

Query: 309  YEILHNLTVAIAI---FDQN---RYLQFHNRSFVELWEIDLAFLAT---------NPSND 353
               L      IA    FD +       + +     L E+D +             +P   
Sbjct: 788  EARLQEAQQ-IARMGSFDLDLVHDRADYWSPGLYALLELDPSQPPPPPSRGSAIHSPERV 846

Query: 354  ELLEFLRSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRGG 411
               + LR++   +PE ++ +T      S  K     +      P+G  + +  T      
Sbjct: 847  GWFDELRTSRVPVPETVHSETVPYFTASGRKGVGHMQAVVQRGPDGTPVRMRGT------ 900

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
                F+++T     E           E    L  G+  F  D    ++N           
Sbjct: 901  ----FQDITRLHQTEQALRDSEARLLEA--QLIAGIGSFDFD----IANDVATYWSTGLY 950

Query: 472  NRLS--PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVL 526
              L   PGT +      C  +    D    F  +IT   DE +S+      L       +
Sbjct: 951  ALLEVEPGTPLPRPLEGC--HIYAPDYAAQFERMITEPADEPESVFWDNIPLRTAKGRRM 1008

Query: 527  EYSIIPL----PNAQTMLTFVNVTDSVR---AERALTEKNEALRKADEIKNSFVQHVSYE 579
               +  +    P+ + +       D  R   AE+AL    E    A+E+K+ FV ++S+E
Sbjct: 1009 MGQMKAVVQRGPDGRPVRARGAFQDISRLYEAEQALQRAKEEAESANELKSQFVANISHE 1068

Query: 580  LRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            +R+PL+ I+G  D+    L  + L + +++Q  Y+  I   S  LL+++ND+LD + ++A
Sbjct: 1069 MRTPLSGILGIVDVALSRLNDTALPAHDNEQGHYLSMIRNVSEGLLHVINDLLDFSRMEA 1128

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
            G + L+     L   +++    +A +     + + V  D  + +    D  RL QI   +
Sbjct: 1129 GRLGLDQVEYDLRAAVSDALAPLAVQAERKGLSLTVHIDADVPARLQGDPLRLRQILVNL 1188

Query: 695  LSNAMDFSSKG-STVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
              NA+ F+     +V +   R        G   F+V++ G  I  D    +F  F     
Sbjct: 1189 AGNAVKFTDTDTGSVHVDVRRSAQCPRPGGCLRFTVQDTGPGITADKLPLLFESFSQADG 1248

Query: 748  RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               RR  G GLGL+I    + L GG + ++S+    +     +P
Sbjct: 1249 SHTRRHSGSGLGLAISRHIVRLQGGDIGVNSTPGQGSRFWFTLP 1292



 Score = 45.7 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 74/585 (12%), Positives = 157/585 (26%), Gaps = 74/585 (12%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY---HSLLTENN 80
           +A  G    + +   +      RQR    +         +        Y     +L + +
Sbjct: 369 MANVGMTLTLCMAVSLLAWSASRQRGQRLEAETALRRSEARYRTLAENYPGGAIMLFDGD 428

Query: 81  CLTIVWDGKD------ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
              ++ DG            I G +   +  PQ           L F   ++L      L
Sbjct: 429 MRCLLADGLGLAGLLAPRQRIEGAIPSDVLPPQVA---------LPFEEQLQL-----AL 474

Query: 135 RKEGQSFDLVAETQ----NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190
                +F +    +        +  + R +G  A    +  D    E A   L+  +   
Sbjct: 475 AGTEVTFTMAVGERIHEVRLRPLHED-RETGMPARCMSVLQDITQREAARMALRHSEARL 533

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
             +       S +  +      G  +W+   Y +    +  +      E   +   E   
Sbjct: 534 QEAQQIARMGSFELHM----DTGAFVWSAGLY-EMLGHDPALPPPPPAEVFAIHAPEELD 588

Query: 251 R-----MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG-------EAGIAIDVSKE 298
                  I S                G  + +   R   + G         G   D++  
Sbjct: 589 WYHEHVAIMSDEPVTELQRVFPYRTLGGRQGWGQFRCRVARGPDRLPLHAQGTFQDITSL 648

Query: 299 ITVNDQLTHTYEILHNL-------TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
                 L  +   L+         + ++ + D      F +     L ++D       P 
Sbjct: 649 REAELALRDSEARLNEAQFIARMGSYSVNLRDGE---AFWSPGLFRLLDLD-------PH 698

Query: 352 NDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQ----TLHVIVTS 406
           +  L+         PE   W + +        +S+E     +    G+     LH++   
Sbjct: 699 DGPLVPGEAFRRHAPEAAPWFEAFLATPADRPESTERRSFPYITATGRRGFGRLHMMARH 758

Query: 407 NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPA 462
              G        F+++T   + E           E       G         R    +P 
Sbjct: 759 GADGLPEHIRGTFQDITPLHEAEQALRESEARLQEAQQIARMGSFDLDLVHDRADYWSPG 818

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
             +L + + ++  P     +   +  R     +       +  +   E            
Sbjct: 819 LYALLELDPSQPPPPPSRGSAIHSPERVGWFDELRTSRVPVPETVHSETVPYFTASGRKG 878

Query: 523 DSVLEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNEALRK 564
              ++  +   P+    +   TF ++T   + E+AL +    L +
Sbjct: 879 VGHMQAVVQRGPDGTPVRMRGTFQDITRLHQTEQALRDSEARLLE 923


>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
 gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
          Length = 993

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/537 (18%), Positives = 206/537 (38%), Gaps = 46/537 (8%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEI------TVNDQLTHTYEILHNLTVAIAIFDQNRY 327
            KS ++  +     +    +++S E       ++ +       IL N    I   D +  
Sbjct: 48  RKSIELSDLRRQLEDKNYELELSSEKLDTTLRSLRESENTLSSILSNSPDTIVAVDDSHR 107

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           + + NRS           +  + S   + +             + T  E +F     ++ 
Sbjct: 108 IIYMNRS-----------MPGHQSEISVGKHFCEHITAERHDIYHTTIEQVFRTGMPAKL 156

Query: 388 HKDTWHLPNGQTLHVIVTSNP---RGG---TIWMFENLTVQVDLETKYNTLVKVQGETID 441
                   NG+++       P    G     + +  +++ +  +E +    +    E  +
Sbjct: 157 ESTVVQQ-NGRSVDFESRFGPCMQEGAITSVVMISTDISERKRIEKELKRSLDDL-ERFN 214

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
               G      + + +  N     L +     +    +        SR     D      
Sbjct: 215 RFMVGREQTNLELK-EEVNRLCEELGRPPRYAVRRAGNGDVYVPLNSREGIRPD------ 267

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           + +   D +R   +   E L     E  I  + +A      +   +  + E ++   N  
Sbjct: 268 SAVNEHDHKRVWKEPDQESLKQRQREALINLVEDANRARNELMNANR-KLEASIARANTM 326

Query: 562 LRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             +A   ++ K+ F+ ++S+E+R+P+  +IG ++LL  S   +L+ +Q ++ E I+AS  
Sbjct: 327 ASEADAANKAKSEFLANMSHEIRTPMNGVIGMSELLLRS---TLDKEQKKFAETINASGK 383

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+L+NDILD + ++A  +++      L DLL+E+    + K  +  +    + D  + 
Sbjct: 384 NLLHLLNDILDFSKIEADKLEIEEIDFNLLDLLDEIINMFSYKAGKKGLNFTFLPDEDIP 443

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR---DNGDFIFSVKNNGSSIPED 733
             +  D  R+ QI   ++SNA+ F+ +G   V ++      DN    F+V + G  I E 
Sbjct: 444 LLLRGDPGRIKQILVNLISNAIKFTDEGEILVNVELEEDFGDNARIRFTVSDTGIGIDES 503

Query: 734 MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              ++F  FV        +  G GLGLSI        GG + + S+    +     I
Sbjct: 504 RMDAIFEPFVQADGSTIRKYGGTGLGLSISNKLARNMGGRIQVRSTPSQGSMFYFSI 560


>gi|300869348|ref|ZP_07113938.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300332647|emb|CBN59136.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1504

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/690 (16%), Positives = 229/690 (33%), Gaps = 80/690 (11%)

Query: 151  CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
             A  I     G         +        E      +L   ++  + ++ +    +   D
Sbjct: 700  RAFDIRIAKLGDGFVATWRDITDRKQTEVELQEGRTQLQQQLAEIEAIYQNAPIGLAILD 759

Query: 211  QAGDILWANISYK--------------------KNTETEGIVFQKAIGESRKLFKEEIKK 250
                 +  N                           +    + +  +     L   EI+ 
Sbjct: 760  TDLRFVRINQRLAEINGYSVEAHLGCTIRELLPDLADAAEGILRPILETGEPLLNVEIRG 819

Query: 251  RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
               +   + + + E    L+H + +   I  V     E      +  E+ + +       
Sbjct: 820  ETPARPGVPRIWLEHFLPLKHND-RIIGISTVCEEITE-----RIQTELLLRESEERYRT 873

Query: 311  ILHNLTVAIAI----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
            +  ++     +    FD+                ID   L  NP  ++     ++  K  
Sbjct: 874  LFESMNEGFCVIEMLFDERDR------------PIDYHLLEINPVFEQQTGLKQAQGKTV 921

Query: 367  EQLNWKTWKENIFSVYKSSETHKDTWHLPNG-----QTLHVIV--TSNPRGGTIW-MFEN 418
             Q+     + + F +Y             NG     +   V       P    +  +F++
Sbjct: 922  RQIV-PNLENHWFEIYGDIALTGKPARFENGSQAMNRWFEVSAFRVGKPESRRVAILFKD 980

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            ++ +  +E       +      + + + V     +G +   N  + +       ++    
Sbjct: 981  ISDRKQVEAALRQSEERYRCLAELIPQLVWTANAEGALLDVNQRWSNFTGLTLEQVH--- 1037

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI---IPLPN 535
                      +  +  D   LF A   +               +D V  + +   I   N
Sbjct: 1038 -----INGWEQVVHSEDLPALFQAWTEAVQQGSSYQAEGRMRRADGVYRWHLHQAIGQKN 1092

Query: 536  AQTMLTFVN------------VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Q  +                  +  R  +      EA  +A+ IK+ F+  +S+ELRSP
Sbjct: 1093 EQGQIVKWFGTATDIEAQKQLEVERDRLLQLEQTAREAAERANRIKDEFLAILSHELRSP 1152

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I+G+T LL+T K   +  K ++ +  I  ++ +   L++D+LD+A +  G + ++ +
Sbjct: 1153 LNPILGWTKLLQTRKFNEI--KTAEALATIERNAKLQCQLIDDLLDVAKILRGKLSIDTT 1210

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             + L  ++     ++ T     +I +  +    +G    D  RL QI   +LSNA+ F+ 
Sbjct: 1211 PVNLVFVIESAIDTVRTAAVSKSILLHPVL-PNIGQVAGDSTRLQQIVWNLLSNAIKFTP 1269

Query: 704  KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
             G  V ++  R        V + G  I       +F  F         +  G+GLGL+IV
Sbjct: 1270 NGGRVDIRIERVKDSAHIIVSDTGKGINPAFLPYIFESFRQEDVSITRKYGGLGLGLAIV 1329

Query: 762  ESFINLHGGHVSISSSDEG-VTTINCRIPS 790
             + +  HGG +S  S  EG   T   R+P 
Sbjct: 1330 RNLVEAHGGTISADSPGEGLGATFTVRLPL 1359



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 65/483 (13%), Positives = 151/483 (31%), Gaps = 61/483 (12%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
           RQ+   A + +E    L+    ++  ++  L       I W   D    + G        
Sbjct: 334 RQQVEAALRESEERLQLALKASRMGTWNWNLQTGK---ITWS--DNLEALFGLEPGE--- 385

Query: 106 PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS----FDLVAETQNDCAIKIEGRVSG 161
              D     F   L      ++  A ++    G++    F +V           +G+V  
Sbjct: 386 --FDGSFEMFVARLHPDDRDRVVGAVDRAISTGENYDIEFRIVYPNGTMRWTMSQGKVLY 443

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANI 220
                + + + GI  ++ E       L      F+ L ++++ + W ++     + + + 
Sbjct: 444 DQNG-QPMEMTGIDLDITERKRSAAALYASEDRFRQLAENINAVFWIKEIPENQVSYVSP 502

Query: 221 SYKK--------NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
           +Y+           + + +   +   E R+      +++  +    E+            
Sbjct: 503 AYQHLWGLNPQELYKDQQVWVDRIYPEDREEVNRAFQEKAAAGKFDEEYRIVLADGNIRW 562

Query: 273 NN-KSYKIVRVLNSFGE-AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQ-- 324
              + + +           GIA D++     E  + +        + N+     I+    
Sbjct: 563 VRDRCFPLHDETGEIYRFTGIAEDITDRKHSEQALRESEERFRTSVDNMLDCFGIYSAMR 622

Query: 325 -------NRYLQFHNRSFVELWEIDLAFLATNPSNDE-----LLEFLRSANKLPEQLNWK 372
                  +  +++ N +         AFL    + +E     L E L +  +      + 
Sbjct: 623 NEQGQIVDFRIEYVNNA---------AFLNNQMTGEEQIGRGLCELLPNHRESGLFDEYC 673

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY--- 429
              E   S+ K S  ++D +          I  +    G +  + ++T +   E +    
Sbjct: 674 QVVETGQSLVKDSLVYEDEYGQQRLVRAFDIRIAKLGDGFVATWRDITDRKQTEVELQEG 733

Query: 430 NTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            T ++ Q   I+ +      G+A+   D R    N     +          G  IR +  
Sbjct: 734 RTQLQQQLAEIEAIYQNAPIGLAILDTDLRFVRINQRLAEINGYS-VEAHLGCTIRELLP 792

Query: 486 TCS 488
             +
Sbjct: 793 DLA 795



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/426 (12%), Positives = 130/426 (30%), Gaps = 52/426 (12%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQK 235
           ELAE       L       ++   +     W+ + Q G I W+      N E    +   
Sbjct: 330 ELAERQQVEAALRESEERLQLALKASRMGTWNWNLQTGKITWS-----DNLEALFGLEPG 384

Query: 236 AIGESRKLF--------KEEIKKRMISSSALEKNFCETVSTL-EHGNNKS--------YK 278
               S ++F        ++ +   +  + +  +N+      +  +G  +         Y 
Sbjct: 385 EFDGSFEMFVARLHPDDRDRVVGAVDRAISTGENYDIEFRIVYPNGTMRWTMSQGKVLYD 444

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI-AIF----DQNRYLQFHNR 333
                      GI +D+++       L  + +    L   I A+F         + + + 
Sbjct: 445 QNGQPME--MTGIDLDITERKRSAAALYASEDRFRQLAENINAVFWIKEIPENQVSYVSP 502

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           ++  LW ++   L         ++ +   ++      +    +   +  K  E ++    
Sbjct: 503 AYQHLWGLNPQELYK--DQQVWVDRIYPEDREEVNRAF----QEKAAAGKFDEEYRIVLA 556

Query: 394 LPNGQTLHVIVTS-NPRGGTIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             N + +       +   G I+ F    E++T +   E       +    ++D++ +   
Sbjct: 557 DGNIRWVRDRCFPLHDETGEIYRFTGIAEDITDRKHSEQALRESEERFRTSVDNMLDCFG 616

Query: 449 VFGP---------DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++           D RI+  N A   L          G  +  +           +   +
Sbjct: 617 IYSAMRNEQGQIVDFRIEYVNNAA-FLNNQMTGEEQIGRGLCELLPNHRESGLFDEYCQV 675

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                +   D         +       +  I  L +   + T+ ++TD  + E  L E  
Sbjct: 676 VETGQSLVKDSLVYEDEYGQQRLVRAFDIRIAKLGDG-FVATWRDITDRKQTEVELQEGR 734

Query: 560 EALRKA 565
             L++ 
Sbjct: 735 TQLQQQ 740


>gi|167043517|gb|ABZ08213.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [uncultured marine microorganism HF4000_APKG2J17]
          Length = 669

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 139/651 (21%), Positives = 257/651 (39%), Gaps = 63/651 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
               + ++LS      + + +++   V    + G I   + + ++          + +GE
Sbjct: 33  RVEERTRELSESEDRIRSIMENIVEAVITIGKDGAIETFSPAAEEMFCYAA---SEILGE 89

Query: 240 SRKLFKEEIKK-----------RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
           +  +  ++ ++           R      ++  F E     + G     ++       G 
Sbjct: 90  NVSILADKPERSEHDQYIENYHRTGKGKIIDVGFREVRGRRKDGTIFPAELAINEIRGGR 149

Query: 289 ----AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
                G   DV++    E T+ +       ++ N  ++I + D +      NR + E W 
Sbjct: 150 RRKFVGTLRDVTERKRAEKTLQESEARFRAVIDNSPMSILLKDCDGKYLMANREWHE-WC 208

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQ 398
                     + D+           PE+ + K  K     V ++          P  +G 
Sbjct: 209 NPEGREIVGKTVDDF---------YPEE-HAKAVKALDKEVLETGAPVVREHRTPRADGT 258

Query: 399 TLHVIVTSNP----RGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            +  ++   P     G  I +     ++T +V  E     +       ++    G+++  
Sbjct: 259 EITTVLYKFPVIGADGSIIGIGGTNVDITARVQAEEARREVESRFRTVVNSAPMGISLKD 318

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            DG+  L N  F +    +   +           T    + E    ++ +     F+   
Sbjct: 319 RDGKFLLVNKTFGTWMDADPAEIE--------GKTFHELFAEKQAGEIESLDRKIFETGE 370

Query: 512 KSLQGTLELLSDSVLEYSII---PLPNA-----QTMLTFVNVTDSVRAERALTEKNEALR 563
           +S+   + L  D V         P+ +A           +++TD  +AE +L +  E   
Sbjct: 371 ESVDEAIRLFQDGVTRTIFTHKSPVRSATGGIVAVSTIMIDITDRKQAEESLRKAMERAE 430

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLN 622
            A+  K  F+ H+S+ELR+PL  I+G++D+LK+   G L N K S YVE ISA+   LL 
Sbjct: 431 FANRAKAEFLAHMSHELRTPLNAILGYSDILKSQVFGPLGNEKYSDYVENISAAGGHLLG 490

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +++DILD++ V+AG + +  S I +   + E K  +  +     + +  +  G L    A
Sbjct: 491 ILSDILDVSKVEAGELDIEDSEIDIAAAIKECKIMMLERADIAKVSLASLVAGDLPRLRA 550

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNR 741
           DR+RL QI   +LSNA+ FS +   V + A  D  G  +  V + G  I  +    +   
Sbjct: 551 DRRRLRQILLNLLSNAVKFSHEKGKVSIAAETDAAGAIVIRVADTGIGIAPENMGKILQP 610

Query: 742 FVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F             G GLGLS+V S ++LHGG + I S+    TT+N   P
Sbjct: 611 FGQVKESYVGKPGEGSGLGLSLVNSLMDLHGGTLDIDSTPGEGTTMNIIFP 661



 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 105/302 (34%), Gaps = 30/302 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R     G   ++ E     K L    + F+ + D+    +  +D  G  L AN  + +  
Sbjct: 149 RRRKFVGTLRDVTERKRAEKTLQESEARFRAVIDNSPMSILLKDCDGKYLMANREWHEWC 208

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALE------KNFCETVSTLEHGNNKS---- 276
             EG   ++ +G++   F  E   + + +   E          E  +    G   +    
Sbjct: 209 NPEG---REIVGKTVDDFYPEEHAKAVKALDKEVLETGAPVVREHRTPRADGTEITTVLY 265

Query: 277 -YKIVRVLNS-FGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQF 330
            + ++    S  G  G  +D++  +   +           ++++  + I++ D++     
Sbjct: 266 KFPVIGADGSIIGIGGTNVDITARVQAEEARREVESRFRTVVNSAPMGISLKDRDGKFLL 325

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N++F    + D A +    +  EL    ++     E L+ K ++    SV ++    +D
Sbjct: 326 VNKTFGTWMDADPAEIEGK-TFHELFAEKQAGEI--ESLDRKIFETGEESVDEAIRLFQD 382

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKV-------QGETIDH 442
                       + ++      +     ++T +   E      ++        + E + H
Sbjct: 383 GVTRTIFTHKSPVRSATGGIVAVSTIMIDITDRKQAEESLRKAMERAEFANRAKAEFLAH 442

Query: 443 LS 444
           +S
Sbjct: 443 MS 444


>gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 641

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 137/261 (52%), Gaps = 5/261 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + N        +     +    L E  E L++ D +K+  +  VS+ELR+PLT+I G+ +
Sbjct: 374 VFNEMADQINSSNEKLKKHAEELKESYEELKELDNLKSDLIAIVSHELRTPLTSIKGYVE 433

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+    +G++N  Q + ++    +   L  L+  +LDL+ ++ G +++    + + D ++
Sbjct: 434 LVLDGTMGTINESQRKCLQVADDNIIRLRRLIESMLDLSKIERGELEMYREAMNVKDTVS 493

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILK 711
           +V + +     E NI++K   D K     AD+ R+ Q+F+ ++ NA+ FS    ++ I+ 
Sbjct: 494 DVIEYLTPLATEKNIKLK--QDIKDLLINADKDRITQVFTNLIENAIKFSPANESIMIIG 551

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
              +NGD   +VK+NG+ IP+   + +F++F       +R   G GLGL++ +S I  HG
Sbjct: 552 KETENGDVHITVKDNGAGIPKKDLEKIFDQFYQVDSSTKRKKGGSGLGLAVCKSIIQAHG 611

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + + S     +T +  +P+
Sbjct: 612 GTIWVESELGRGSTFHIVLPA 632


>gi|189500623|ref|YP_001960093.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides BS1]
 gi|189496064|gb|ACE04612.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides BS1]
          Length = 608

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 162/393 (41%), Gaps = 26/393 (6%)

Query: 401 HVIVTSNPRGGTIWMFEN-LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            + + S+   G +    N ++ ++    + N   +        + E + V   +G IKL 
Sbjct: 218 RLEINSDDEIGRLARAVNFMSDEM---KRMNQQEEWFKAVFSSIREAIIVTDANGNIKLG 274

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           NPA   L+   +  L        I         +S  ++L   +  S     K     + 
Sbjct: 275 NPAACRLFNL-DCALM-------IKTGAGHKATDSRLFELLERMTASGSTVEKEEVTVMT 326

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              + VL+ S +P+   +     V V                L   + ++  FV  VS+E
Sbjct: 327 DRGERVLQVSAMPIIKRKIPEGTVFVM----------NDITKLLNLERMRRDFVSSVSHE 376

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT+I G+T+ L    +         +++ I   S  L  L+ND+LDL+ +++G ++
Sbjct: 377 LRTPLTSITGYTETLLEGAIDDA-ENAKHFLQIILQESERLTALINDVLDLSKIESGRIE 435

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             ++ + L  ++++V       + +  I ++V     L    AD+  L  +   +L NA+
Sbjct: 436 YTFAPVCLRAIVDQVVDLFGRAIEKKGIVLRVQIPQDLPYVNADKGYLELVLRNLLDNAI 495

Query: 700 DF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            + + +   +++ A+  +      VK+NG  IP      +F RF        R   G GL
Sbjct: 496 KYVAEQNGQIMISASTVDDMVRVEVKDNGIGIPRKDLGRIFERFYRVDKARSRAVSGTGL 555

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSIV+  +  H G V + S     +  +  IP
Sbjct: 556 GLSIVKHIVLAHKGKVEVRSRLNLGSQFSFVIP 588



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 22/142 (15%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL--------AT 348
           +   +N Q      +  ++  AI + D N  ++  N +   L+ +D A +        AT
Sbjct: 240 EMKRMNQQEEWFKAVFSSIREAIIVTDANGNIKLGNPAACRLFNLDCALMIKTGAGHKAT 299

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           +    ELLE + ++    E       KE +  +    E       +P      +I    P
Sbjct: 300 DSRLFELLERMTASGSTVE-------KEEVTVMTDRGERVLQVSAMP------IIKRKIP 346

Query: 409 RGGTIWMFENLTVQVDLETKYN 430
            G T+++  ++T  ++LE    
Sbjct: 347 EG-TVFVMNDITKLLNLERMRR 367


>gi|255523429|ref|ZP_05390398.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296184711|ref|ZP_06853122.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255512887|gb|EET89158.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296050493|gb|EFG89916.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 798

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/524 (18%), Positives = 206/524 (39%), Gaps = 38/524 (7%)

Query: 294 DVSKE----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLAT 348
           D++++      +  Q      I+ N++ A+ IFD N      N++    L+     +   
Sbjct: 257 DITEQVKKDELIRYQKEKLEAIIENISDALVIFDGNGDFTIVNKAARNYLF-----YNKV 311

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             +  E+ E +   +     ++ +          +        +   N + +++ +   P
Sbjct: 312 LNNVKEVCEQVECTDIDGNLISSENLPAERVLKGEKLSP-CKIFMKINNKRVNIELNGTP 370

Query: 409 ----RG---GTIWMFENLTVQVDLETKY--NTLVKVQGETIDHLSEGVAVFG-PDGRIKL 458
               +G     I  F ++T +V  E      T   +    +++L   V     PD +I  
Sbjct: 371 VYNKQGEFVAGIICFRDVTEKVKSEEDLLIKTQYGLLNRMVENLDLPVITLSYPDLKITH 430

Query: 459 SNPAFRSL-----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            N              +      G +  +I    ++Y       D+     TS+    + 
Sbjct: 431 INQKAYKFISGLKPGIKSISSLKGKNYSDIITNFNKYMLLKHIKDIVNKKETSYLKYIRL 490

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +    E+    +  Y  +   N +     V   D  +   A  +  + L+  ++    F+
Sbjct: 491 IVDGEEVFVKKL--YQPVLGLNGELAQVVVIFMDVTQEIEAKLKMEKTLKMHEQ----FL 544

Query: 574 QHVSYELRSPLTNIIGFTDLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            ++S+EL++PL  I     LL    K   +     K  +   +I  +   L+ L+ +I+D
Sbjct: 545 TNISHELKTPLNVIFSSAQLLELYLKNKSVEENKEKIIKDTYFIRQNCYRLIKLIGNIID 604

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           L+ +++G  KLN S   +  ++ ++ QS++  +   ++ I   +D +      D  ++ +
Sbjct: 605 LSKIESGFFKLNLSNENIVSVVEDIVQSVSEYVESKDLSIIFDTDVEEKIIACDPDKIER 664

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           +   ++SNA+ FS  G  + +  A  N     SVK+NG  I ++   ++F RF       
Sbjct: 665 VVLNLISNAIKFSDPGDEIYVNIADKNETVEISVKDNGIGIDKNHLNAIFERFNQVDKSF 724

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                G G+GL +V+S + LHGG +S  S     +T    +P +
Sbjct: 725 TRNAEGSGIGLCLVKSIVELHGGKISAESKLGEGSTFKIELPLR 768



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 107/283 (37%), Gaps = 30/283 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  + +Q      I+ N+   + IFD+N      N S  +++  +   +  + +  +  
Sbjct: 134 QERVIKEQKQELESIVENMFDGVHIFDRNYKCSILNNSGKKIF-YNEDLMKNSENVLKCT 192

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGT 412
            +      L E+ +  + K       K           P+G   +  + S+P     G  
Sbjct: 193 NYYDCEGNLIEEEDLPSRKAIKGERLKGYRLMCKK---PDG-VYYYDINSSPIYDKDGNI 248

Query: 413 I---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           I   +   ++T QV  +       +     I+++S+ + +F  +G   + N A R     
Sbjct: 249 IKAIFCSHDITEQVKKDELIRYQKEKLEAIIENISDALVIFDGNGDFTIVNKAAR----- 303

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-----DERKSLQGTLELLSDS 524
             N L     + N+   C +        +L ++     +     ++    +  +++ +  
Sbjct: 304 --NYLFYNKVLNNVKEVCEQVECTDIDGNLISSENLPAERVLKGEKLSPCKIFMKINNKR 361

Query: 525 V-LEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEA 561
           V +E +  P+ N Q      ++ F +VT+ V++E  L  K + 
Sbjct: 362 VNIELNGTPVYNKQGEFVAGIICFRDVTEKVKSEEDLLIKTQY 404


>gi|254459383|ref|ZP_05072804.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD
           1]
 gi|207083996|gb|EDZ61287.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD
           1]
          Length = 958

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 173/412 (41%), Gaps = 42/412 (10%)

Query: 415 MFENLTVQVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           +  N++++  +  + + L    +      ++    +A+ G D +    N  F  L   +E
Sbjct: 284 ILWNISLKSRVAKRIHELEQHDEYYHSLFNNSIYAIAITGADFKFTHVNKEFCDLLGYDE 343

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-------- 523
             L     I ++       Y++S    L     T +  +++ L  + +++          
Sbjct: 344 KELINTFGILDVTYIEDLNYSKSMIDKLIRGASTKYKIKKRYLTKSAKVVDAVSFIHAIY 403

Query: 524 -----------SVLEYSIIPLPNAQTMLTF--------VNVTDSVRAERALTEKNEALRK 564
                      S+L+ S       + +               +  +A + L +  E+   
Sbjct: 404 DDNNTYIGATISILDISDKKHAQEEVLKHKSRLVELVAQRTQELSKANKLLAKAKESAEL 463

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ KN F+ ++S+E+R+P+  I+GF+ LL  +K   LN++Q  Y+     ++  LL+L+
Sbjct: 464 ANKSKNIFISNMSHEIRTPMNAILGFSRLLSHTK---LNNQQKTYLSRAKKATKSLLSLL 520

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            D LDL+ ++AG + +         ++ E+ + +     E  + I+   D  L    + D
Sbjct: 521 EDTLDLSKIEAGKLTIENIPFQPKVIVTEITELLELNAKEKGLLIEYEIDEHLPKYLLGD 580

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FSVKNNGSSIPEDMCKSV 738
             R+ Q+   +++NA+ F+  GS + +    ++ +       F V + G  I ++    +
Sbjct: 581 PNRIKQVLINLINNAIKFTQDGS-IYVSVFVNSKNIHNCCVEFVVSDTGIGIKKENLADI 639

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  F    +   ++  G GLGL+I +  +   GG + + S     +T +  +
Sbjct: 640 FEHFTQVDNSTTKKEDGTGLGLAISKELVKRMGGQIDVQSEYREGSTFSFEL 691


>gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1059

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 103/525 (19%), Positives = 202/525 (38%), Gaps = 47/525 (8%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +  Q      +L      I++ ++    Q  N +F     +    +     +  L    +
Sbjct: 254 LQTQRNRFETLLAANPDLISLKNRVGIYQVVNPAFCHFLGLPKEAILGQ-DDARLFTPHQ 312

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----GGTIWM 415
           +A     Q +         S  +      D   L     LHVI T   +      G +  
Sbjct: 313 AARIR--QADQWVLSSGAPSAQEEEAVGPDNLPL----WLHVIRTPITQATGEVSGILTT 366

Query: 416 FENLTVQVDLETKYNTLVK------------------VQGETIDHLSEGVAVFGPDGR-I 456
             N++ +   E    T  +                        ++L   V +  P    +
Sbjct: 367 VRNISARRMAEEALRTAHEGLEQEVAQRTQALRESETRLRIVTENLPAVVWMSDPLLTSM 426

Query: 457 KLSNPAFRSLWK-TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL- 514
              +PA+  +W  + E+ L     +        R +       +  +    ++ E + L 
Sbjct: 427 HFVSPAYEQIWGKSRESLLQDPQSLWTSIHPSDRSFV---LKRILNSNGQPWEAEYRILH 483

Query: 515 -QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             GT   + +    +          +    +VT     ERAL+   +    A+  K++F+
Sbjct: 484 PDGTTRWIREQGAAFRDTHKQILFLIGCAFDVTPLKETERALSTAKQEAESANHAKSAFL 543

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+PL  I G  +LL+ S   +L+ +Q Q VE IS  S +L++++NDILDL+ +
Sbjct: 544 ATMSHEIRTPLNGITGMIELLQRS---ALSVEQRQQVETISKCSVVLMDILNDILDLSKI 600

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           +AG + L  +      LL  + + +  +     + +++  D KL  + + D  RL Q+  
Sbjct: 601 EAGQLVLERAPFSPTQLLLNLLEVMQPQARNKELDLQLNMDEKLPSTMLGDATRLRQVAL 660

Query: 693 KILSNAMDFSSKG-STVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            ++ NA+ F+ +G   + L       D +    +V++ G  I ++    +FN F      
Sbjct: 661 NLIGNAIKFTPRGWVKISLLVHERIDDIVWVELAVQDQGIGIADEKLVHLFNPFTQADSS 720

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 G GLGL+I +  +    G +S++S +   T     +P +
Sbjct: 721 ITRNYGGTGLGLAISKRLVEAMAGAISVTSIEGKGTHFRVTLPMQ 765



 Score = 44.2 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 92/299 (30%), Gaps = 45/299 (15%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT-------IVWDGKDETPEIIGQLHQR 102
           ++A        +   +  Q +++ +LL  N  L        I           +G L + 
Sbjct: 239 AIAAMSRSIGEYHRHLQTQRNRFETLLAANPDLISLKNRVGIYQVVNPAFCHFLG-LPKE 297

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS--FDLVAETQNDCAI------- 153
             + Q D  L         H   ++ +A + +   G     +  A   ++  +       
Sbjct: 298 AILGQDDARL------FTPHQAARIRQADQWVLSSGAPSAQEEEAVGPDNLPLWLHVIRT 351

Query: 154 ---KIEGRVSGSCAFLRILSLDGIYSELAET---------TLKCKKLSNHISVFKVLFDS 201
              +  G VSG    +R +S   +  E   T           + + L    +  +++ ++
Sbjct: 352 PITQATGEVSGILTTVRNISARRMAEEALRTAHEGLEQEVAQRTQALRESETRLRIVTEN 411

Query: 202 LDFLVWHRDQAGD-ILWANISYKKN---TETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           L  +VW  D     + + + +Y++    +    +   +++  S          + I +S 
Sbjct: 412 LPAVVWMSDPLLTSMHFVSPAYEQIWGKSRESLLQDPQSLWTSIHPSDRSFVLKRILNSN 471

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------AGIAIDVSKEITVNDQLTHTYE 310
            +    E       G  +  +                 G A DV+        L+   +
Sbjct: 472 GQPWEAEYRILHPDGTTRWIREQGAAFRDTHKQILFLIGCAFDVTPLKETERALSTAKQ 530


>gi|309390020|gb|ADO77900.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 173/379 (45%), Gaps = 38/379 (10%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            E+   +V  E             +  + +GV     +G + L NPA R ++  E  ++ 
Sbjct: 243 LEDKITEVSQEKNRIE------AILASMLDGVIAVNAEGEVTLINPAARRIFNIEAEKIR 296

Query: 476 PGTHIRNIAATCSRYYNES--DGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSII 531
             T I ++ +     Y +   D  ++ +  I   + E+K +Q T    L +D  L   +I
Sbjct: 297 GKTLISSLFSHRIDMYLQRAFDKKEVISREIKYKNPEQKIIQATFIPLLAADKKLNGGVI 356

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            L +                          LRK + ++N FV +VS+ELR+PLT+IIG+ 
Sbjct: 357 VLTD-----------------------ITELRKLETVRNDFVANVSHELRTPLTSIIGYL 393

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           D L  S +   ++++  +++ I   +  L NL+ND+L+L+ +++ I KL         ++
Sbjct: 394 DTLLESDIEDQDTRER-FLQIIKEETDRLSNLINDLLNLSKIESQIFKLEADNF--EKIV 450

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V   ++ K  +  + + +  D  L      R+++ Q+   ++ NA+ ++++G  V +K
Sbjct: 451 KKVVNLLSQKAKKQKLELNLEIDNNLPLVYMVREQIKQVLINLIDNAIKYTAEGGKVEVK 510

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
             ++     FSV++NG  IP+   + +F RF        R   G G+GLSIV + I  HG
Sbjct: 511 VKQEKDKIYFSVQDNGMGIPQADQERIFERFYRVDKARSRALGGTGIGLSIVRNIIKQHG 570

Query: 770 GHVSISSSDEGVTTINCRI 788
             + + S +   +     +
Sbjct: 571 SEIQLKSREGVGSEFYFYL 589



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 7/134 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           K   V+ +      IL ++   +   +    +   N +   ++ I+   +        L 
Sbjct: 246 KITEVSQEKNRIEAILASMLDGVIAVNAEGEVTLINPAARRIFNIEAEKIRGKTLISSLF 305

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
              R    L    +    KE I    K     +          + ++       G + + 
Sbjct: 306 SH-RIDMYLQRAFDK---KEVISREIKYKNPEQKIIQA---TFIPLLAADKKLNGGVIVL 358

Query: 417 ENLTVQVDLETKYN 430
            ++T    LET  N
Sbjct: 359 TDITELRKLETVRN 372


>gi|298483182|ref|ZP_07001362.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270699|gb|EFI12280.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 579

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 163/375 (43%), Gaps = 16/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +ET      +   + +D+++  + V   D  ++  +N  FR              
Sbjct: 202 TKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPENAECWR 261

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +        ++  +    D                      ++        + +     
Sbjct: 262 MLNAGLENGCKHCPKPKLLDANRKFT------GVHFWEDYNPVTKRWYTIQSMAIKWLDG 315

Query: 539 MLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 316 RWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL 375

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L   +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV
Sbjct: 376 AETDEAEL---RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREV 432

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + + K  ++ + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +  +  
Sbjct: 433 IATFSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYSLE 492

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D     F V + G  IP++    +FNRFV      Q  G GLGLSI +S +   GG + +
Sbjct: 493 DESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVKRMGGKIGV 550

Query: 775 SSSDEGVTTINCRIP 789
            S +   +      P
Sbjct: 551 ESREGEGSCFWFTHP 565


>gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 683

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 126/264 (47%), Gaps = 20/264 (7%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +     +AE+AL E  E    A+  K+ F+  +S+E+R+P+  I+G  +LL  +   
Sbjct: 125 TQFSEYFLNQAEKALFEAKEEAEAANRAKSDFLASMSHEIRTPMHAILGMAELLLET--- 181

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q +YVE    +   LLN++NDILD++ V+AG ++L      L +++    +++A 
Sbjct: 182 PLSPEQQRYVEIFRNAGENLLNIINDILDISKVEAGHLELENIEFDLGEIIERTVEALAI 241

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------- 710
           + H   + +   I      + + D  RL QI   ++ NA+ F+ KG  V+          
Sbjct: 242 RAHGKGLELACHILPDVPVNLIGDPVRLQQILINLVGNAIKFTEKGEVVVHVEKSTELTG 301

Query: 711 ---KAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
                  + G  + +FS+ + G  IP++    +F +F        R   G GLGLSI   
Sbjct: 302 GPETGTEEGGKVELLFSIADTGIGIPQEKIDKMFEKFTQADSSTTRKHGGTGLGLSISRR 361

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + + GGH+ + S     TT    
Sbjct: 362 LVEMMGGHIRLDSEVGKGTTATFT 385


>gi|42524956|ref|NP_970336.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39577167|emb|CAE80990.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 529

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/363 (24%), Positives = 161/363 (44%), Gaps = 25/363 (6%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           S  V  F   G I  +NP F +L + E + +    H   +           + W+  A  
Sbjct: 12  SNAVIEFDNQGYILWANPNFLNLMEYELDEIEGRHHSIFLPEFHQHELEYQEMWNQLAEG 71

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---------- 553
                + ++  +   E+     ++ S  P+ N Q  ++ +        E+          
Sbjct: 72  HAQAGEFKRLTKKNREV----WIQGSYTPVRNLQGEISKIVKMAVDITEKKSLADNLEKK 127

Query: 554 --ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L       + A + K  F+ ++S+E+R+PL +IIG TD L  +    L+++Q+ +VE
Sbjct: 128 NKELLGAATKAKAATDAKTVFLANMSHEIRTPLNSIIGITDTLAET---PLDNQQASFVE 184

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  ++  L+ ++NDILDL+ V+AG M+L      L  LL+E++  +  +  E  +++ +
Sbjct: 185 ILQRANHQLMTIINDILDLSKVEAGEMELRPLPFNLQRLLDELEAVLGFRAKEKGLKLSL 244

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNG 727
             D  +   FV D  RL Q+   +L+N++ F++ G     V +      G+ +F V + G
Sbjct: 245 AIDPDVEEYFVGDADRLRQVLMNLLNNSLKFTNNGEISLQVSVNRTVHKGNLLFCVTDTG 304

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +   K +F  F        R   G GLGLSI ++ + +  GH+   S     T+  
Sbjct: 305 IGISKQKFKDIFQPFTQADTTTTRKYGGTGLGLSITKNIVQMMNGHIWFESQPGQGTSFF 364

Query: 786 CRI 788
             I
Sbjct: 365 FTI 367


>gi|316934984|ref|YP_004109966.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315602698|gb|ADU45233.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 607

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 177/397 (44%), Gaps = 23/397 (5%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W+       +++E +   L+        ++S+ ++    +G ++  +PA  +L    
Sbjct: 187 GAAWLARTNGALLNVEEERYRLLAR------NMSDVISRHNRNGAVRFISPAAENLIGVP 240

Query: 471 -----ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                E+ L    H+ +  A      + + G +  +       +  +  +G         
Sbjct: 241 MVQLAEHGLFDRVHVADRPAYLKAISDAARGRETGSVEFRIRREVVRDERGRPSAAEFVW 300

Query: 526 LEYSIIPLP---------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +E    PL            + +    ++T+    E+AL E      +AD+ K+ F+  +
Sbjct: 301 VEMRCRPLEPGAATAPTGETEVVAVMRDITERKLHEQALDEARAEADRADDAKSRFLATM 360

Query: 577 SYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           S+ELR+PL  IIGF+D++ +  +L     ++ +Y + I+ S   LL++VN ILD++ +++
Sbjct: 361 SHELRTPLNAIIGFSDMIVQEDELRLGAERRKEYAQLINDSGQHLLSVVNGILDMSKMES 420

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G  ++          L      +A K  ++ I +   +   L   V D +   QI   ++
Sbjct: 421 GNFEIVPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPENLPDVVGDPRAFKQILLNLV 480

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRG 753
           SNA+ F+ +G TV + AA ++   +  V + G  I E+  K + + F         +  G
Sbjct: 481 SNAVKFTERGGTVTVSAAVESTRLVLCVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEG 540

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGLSIV+S + +HGG + + S  +  TT+   +P 
Sbjct: 541 TGLGLSIVKSLVRMHGGEIDVRSQIDCGTTVTVSLPL 577


>gi|298528808|ref|ZP_07016212.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512460|gb|EFI36362.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 789

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 111/652 (17%), Positives = 243/652 (37%), Gaps = 69/652 (10%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF--QKAIGE 239
             K    S     ++ +        +     G  ++ N +       +      +     
Sbjct: 9   KEKYSSPSTASLDYQDMLMHAPLGCFQSTPEGKFIFVNHAMASIHGYDSAESMLESVTDI 68

Query: 240 SRKLFKEEIKK-RMISSSALEKNF--CETVSTLEHGNNKS--YKIVRVLNSFGEA----G 290
           + +++ E   + R+     +       E       G        I  V  S G      G
Sbjct: 69  ASQIYAEPADRGRITRLLEVHGEVVNHECRIIRRDGYEIWVSLNIRAVTGSDGLISCWHG 128

Query: 291 IAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
              D+++     +     +E L +    +   I  F+    + + N+ + + + +    L
Sbjct: 129 FVSDITRRKQSQEMQKKHHEKLDSFLRDIPAMICCFNPQGVITYINQQYCDYFGMPQEEL 188

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ---TLHVI 403
                    L+ +   +K   Q N+ +      +     +T +    LP+G       + 
Sbjct: 189 LG----SIFLDLIPGKDKEISQQNFTS-----LTTEHPVKTVEHRVQLPDGTIRWHRWID 239

Query: 404 VTSNPRGGTIWMFE----NLTV----QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
                  GT   ++    ++T     Q+ LE+ +     +     +   EG      D R
Sbjct: 240 RAVFDEAGTPEYYQSVGLDITEIKTQQLKLESIFEACKDISFVIAESCPEG------DLR 293

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL- 514
           I   +P   S+   ++         + +        +  +  + F  I TS    R    
Sbjct: 294 ITDFSPGAESVHGYQK---------QEVVGQSVAMLHSREDLEKFPEIYTSIRQGRVWRG 344

Query: 515 QGTLELLSDSVLE--YSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIK 569
              ++  +  V    +++ PL     +      V++++     RAL +  EA   A + K
Sbjct: 345 SMFMQRKNGQVFPALFTVYPLEIEDRLSALGVAVDISELEEVRRALQKAKEAAEAASQAK 404

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           ++F+ ++S+ +R+P+  I+GF  +++     SL+ +  + V+ IS ++  LL ++NDILD
Sbjct: 405 STFLANMSHGIRTPMNIIMGFARIMERDF--SLSRQHLRQVQTISRNADNLLRILNDILD 462

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           +++++AG ++ +     L+    ++   + ++     + +     G +  +V  D+  L 
Sbjct: 463 MSSIEAGQVRQHAEDFDLHHFFEQLMGMLLSRADSRGLELSFERAGYIPRYVHGDQGMLR 522

Query: 689 QIFSKILSNAMDFSSKG------STVILKAARDNG----DFIFSVKNNGSSIPEDMCKSV 738
           QI   +L NA+ F+S+G        +  ++A D+        F V++ G  I  D  +++
Sbjct: 523 QILINLLDNALKFTSRGWVKCSIKNIQARSAADDSPDVFKLEFRVEDTGPGISSDEQENL 582

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  F       Q  G GLGL+I   +  + GG +   +   G +     +P 
Sbjct: 583 FEPFYQTVAGTQEGGTGLGLAISLRYSRIMGGDLWYENRQGGGSCFCLHVPL 634


>gi|66044351|ref|YP_234192.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255058|gb|AAY36154.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 576

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/523 (22%), Positives = 210/523 (40%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+  
Sbjct: 342 RDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +    +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L    
Sbjct: 402 LLIVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRL 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VPASQAGLIDGDWPTYGFALASGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|17228724|ref|NP_485272.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17130576|dbj|BAB73186.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 1749

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 118/651 (18%), Positives = 239/651 (36%), Gaps = 57/651 (8%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI----LWANISYKKNTET 228
            GI +++ E  L    L       +   D++ F        GDI     + N S+++    
Sbjct: 1116 GISTDITERKLAEDSLLRFHKAMESTSDAIIF--------GDIFNISNYTNPSFQELYGY 1167

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG------NNKSYKIVRV 282
                 Q A G      + + ++ +++     +++   V+           + +S  I   
Sbjct: 1168 NLEQLQAAGGVCTVFQEPQKQQEIMARVMKGESWRGEVAMRSRDGSLLQVDLRSDAIRDS 1227

Query: 283  LNSF-GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ---NRYLQFHNRSFVEL 338
                 G   I  D++K   V + L      +   +  I I D    NR + + N +F  +
Sbjct: 1228 NGKIIGTVCIHTDITKRQQVEEGLKLRDRAIDASSNGIIIADASTPNRPIIYVNPAFERM 1287

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
                   +     N  L +          +L+         +V   +       +  +G 
Sbjct: 1288 TGYSSDEVIGQ--NFRLFQSADIDQLGLRELSTAMQAGKACTVILRN-------YRKDGS 1338

Query: 399  TLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV---- 447
             L   +  +P           I +  ++T +   ET      +     +      +    
Sbjct: 1339 LLWNELNISPVYDQTGQLTHYIGIQTDITERKQAETALLVSQQRLQYLLTSSPAVIYTCK 1398

Query: 448  ------AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
                  ++F  D    ++    +   +  +   S   H  +  A   +  +      +  
Sbjct: 1399 TCGDFGSIFVSDNITTITGYPAQEFTENSDFW-SNHIHPEDAPAILRKLSS------VLE 1451

Query: 502  AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
              I   +       GT   + D             + +   +++TD  + E  L    E 
Sbjct: 1452 EEIYKLEYRFLHKDGTYHWIYDQGRVVKDDTNNPVEMVGYLIDITDRKQLEEYLKVALEK 1511

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             ++  E+K+ FV   S+E R+PL+ I+  ++LL+  +      KQ  ++  I  +   + 
Sbjct: 1512 EKELSELKSRFVSMTSHEFRTPLSTILSSSELLEHYRHKWTEEKQLTHLHRIQTAVKRMT 1571

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDIL +   +AG ++     + +      + + I   +  NN ++  IS+ +  S  
Sbjct: 1572 EMLNDILIIGKAEAGKLEFMPRPLDVVAYCQNLVEEIQLNL--NNQQVNFISEHQSMSCC 1629

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
             D + L  I   ++SNA+ +S   S V +K    +   +F V++ G  IP +    +F  
Sbjct: 1630 MDEKLLGHILINLISNAIKYSPANSNVQVKFYCRDRCAVFEVQDWGIGIPAEDITHLFES 1689

Query: 742  FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            F    + G   G GLGL+IV+  +++H G +S+SS+ E  T     IP K+
Sbjct: 1690 FYRAKNVGNILGTGLGLAIVKKCVDIHQGEISVSSNPEVGTLFTVNIPLKQ 1740



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 103/302 (34%), Gaps = 33/302 (10%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYL 328
             +  K    L       +A ++S      +QL  + ++L      +  ++   D+N   
Sbjct: 425 ERRVAKRTLALQKANRQLLA-EISDRQIAQEQLRQSQQMLQLVMDTIPHSVFWKDRNSVF 483

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NR+F  +   +        ++ + L         P+  N   +++    + +++   
Sbjct: 484 LGCNRNFAIMVGYEHPENLIGKTDYDFL---------PDPRNADLYRQCDARIIETNNPE 534

Query: 389 ---KDTWHLPNGQTLHVIVT----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGE 438
               +    P+GQ + +        +P G   G +  FE++T +  ++       +    
Sbjct: 535 YHIIEPMLAPDGQQIWLETNKVPLHDPEGNVVGVLGTFEDITERKQVQEALEKSEERFRF 594

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             + + + V +  PDG I+  N      +  E   +      + I      +  E   W 
Sbjct: 595 LAESIPQQVWIAQPDGYIEYVNQRTLEYFGNEPESILGWKWQQWIHPDDRPHCLE--IWQ 652

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAER 553
              A     D E + L+ T +     +     + L ++Q  +        ++ D  + E 
Sbjct: 653 HCVATGEPLDVEFRWLRTTDQTYRWHI--GRALALRDSQGNIINWFGTNTDIDDRKQTEE 710

Query: 554 AL 555
           AL
Sbjct: 711 AL 712



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 109/332 (32%), Gaps = 53/332 (15%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + +E+++  +  ++L     + +++ D++   V+ +D+    L  N ++      E    
Sbjct: 442 LLAEISDRQIAQEQLRQSQQMLQLVMDTIPHSVFWKDRNSVFLGCNRNFAIMVGYEHPEN 501

Query: 234 QKA-------IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
                               +   R+I ++  E +  E +     G     +  +V    
Sbjct: 502 LIGKTDYDFLPDPRNADLYRQCDARIIETNNPEYHIIEPMLAP-DGQQIWLETNKVPLHD 560

Query: 287 ------GEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFV 336
                 G  G   D+++   V + L  + E       ++   + I   + Y+++ N+  +
Sbjct: 561 PEGNVVGVLGTFEDITERKQVQEALEKSEERFRFLAESIPQQVWIAQPDGYIEYVNQRTL 620

Query: 337 ELWEIDLAFLAT-------NPSN-DELLEFLRSANKLPEQLNWK-TWKENIFSVYKSSET 387
           E +  +   +         +P +    LE  +      E L+ +  W       Y+    
Sbjct: 621 EYFGNEPESILGWKWQQWIHPDDRPHCLEIWQHCVATGEPLDVEFRWLRTTDQTYR---- 676

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV------------ 435
               WH+  G+ L +  +            ++  +   E      VK+            
Sbjct: 677 ----WHI--GRALALRDSQGNIINWFGTNTDIDDRKQTEEALAERVKLSDFRSEVDTILT 730

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           Q  T+  L  G      D  +K  N AF  +W
Sbjct: 731 QSYTLQDLMRG----SADAVVKHLNAAFARIW 758



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/395 (14%), Positives = 126/395 (31%), Gaps = 44/395 (11%)

Query: 182  TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
                  L +    F+ L ++    VW  D+     + +    K  +  G   Q+ +G S 
Sbjct: 873  QQTEAALRHSEERFRNLVETSSDWVWEVDENAIYTYVSP---KVKDILGYEPQELLGRSP 929

Query: 242  -KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA----------- 289
              +      +R+I          +    LE+ N +    + VL + G             
Sbjct: 930  LDMMPPTEAERVIKIFTSFMAAQQPFKCLENTNVRKDGCLVVLETSGVPVFDAEGKFCGY 989

Query: 290  -GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             G+  D++    V   L  T +    IL N    I + D        NR + +L+    +
Sbjct: 990  RGMDRDITARKEVETNLYQTQQQLQVILDNSPAIIYVMDLQNRFILVNRQYEQLFHTTQS 1049

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
             +      +     +          N +     +    +    H+D  H      L +  
Sbjct: 1050 EIVGKSVYETWPNDIAHQYAF---NNRQVITTGMAIEVEEVVPHEDGLH----TYLSIKF 1102

Query: 405  TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                R G ++    ++  +         +    + ++  S+ +           +NP+F+
Sbjct: 1103 PLKDRNGIVYAMCGISTDITERKLAEDSLLRFHKAMESTSDAIIFGDIFNISNYTNPSFQ 1162

Query: 465  SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-- 522
             L+     +L            C+ +       ++ A ++       +S +G + + S  
Sbjct: 1163 ELYGYNLEQLQ------AAGGVCTVFQEPQKQQEIMARVMKG-----ESWRGEVAMRSRD 1211

Query: 523  DSVLEYSI----IPLPNAQTMLTFVNVTDSVRAER 553
             S+L+  +    I   N + + T    TD  + ++
Sbjct: 1212 GSLLQVDLRSDAIRDSNGKIIGTVCIHTDITKRQQ 1246



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 90/278 (32%), Gaps = 30/278 (10%)

Query: 291  IAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
            IAI + ++      L H+ E   NL    +  +   D+N    + +    ++   +   L
Sbjct: 866  IAIGIKRQ-QTEAALRHSEERFRNLVETSSDWVWEVDENAIYTYVSPKVKDILGYEPQEL 924

Query: 347  ATNPSNDELLEFLRSANKLPEQLNWKTWK--ENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                  D           +P     +  K   +  +  +  +  ++T    +G  + +  
Sbjct: 925  LGRSPLD----------MMPPTEAERVIKIFTSFMAAQQPFKCLENTNVRKDGCLVVLET 974

Query: 405  TSNP----RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            +  P     G   G   M  ++T + ++ET      +     +D+    + V     R  
Sbjct: 975  SGVPVFDAEGKFCGYRGMDRDITARKEVETNLYQTQQQLQVILDNSPAIIYVMDLQNRFI 1034

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            L N  +  L+ T ++ +   +         +  Y  ++   +   +    ++      G 
Sbjct: 1035 LVNRQYEQLFHTTQSEIVGKSVYETWPNDIAHQYAFNNRQVITTGMAIEVEEVVPHEDGL 1094

Query: 518  LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
               LS         PL +   ++  +    +   ER L
Sbjct: 1095 HTYLSIK------FPLKDRNGIVYAMCGISTDITERKL 1126



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 64/500 (12%), Positives = 139/500 (27%), Gaps = 84/500 (16%)

Query: 128  SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
                 +         +  ET        EG V G         + G + ++ E     + 
Sbjct: 534  EYHIIEPMLAPDGQQIWLETNKVPLHDPEGNVVG---------VLGTFEDITERKQVQEA 584

Query: 188  LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
            L      F+ L +S+   VW     G I + N    +  E  G   +  +G   + +   
Sbjct: 585  LEKSEERFRFLAESIPQQVWIAQPDGYIEYVNQ---RTLEYFGNEPESILGWKWQQWIHP 641

Query: 248  IKK-------RMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFG----EAGIAID 294
              +       +   ++    +             + +  + + + +S G      G   D
Sbjct: 642  DDRPHCLEIWQHCVATGEPLDVEFRWLRTTDQTYRWHIGRALALRDSQGNIINWFGTNTD 701

Query: 295  VSKEITVNDQLTHTYE----------------ILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
            +       + L    +                 L +L         +  ++  N +F  +
Sbjct: 702  IDDRKQTEEALAERVKLSDFRSEVDTILTQSYTLQDLMRG----SADAVVKHLNAAFARI 757

Query: 339  WEID--LAFLATNPSNDELLEFLRSANKLPE-----QLNWKTWKENIFSVYKSSETHKD- 390
            W ++     L    S+        S   +P       L  +  K ++ +  ++     + 
Sbjct: 758  WILNKQENLLELQVSSGRYTHLDGSHRCIPVGQCKIGLIAQVGKPHLTNCVQTDPLISNP 817

Query: 391  TWHLPNGQTL---HVIVTSNPRGGTIWMF-----------------ENLTV---QVDLET 427
             W    G      + ++  N   G I MF                   + +   +   E 
Sbjct: 818  EWVKQEGMVAFAGYPLIVENETLGVIAMFSCQALSESHFQALGIAANQIAIGIKRQQTEA 877

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                  +     ++  S+ V     +      +P  + +   E   L   + +  +  T 
Sbjct: 878  ALRHSEERFRNLVETSSDWVWEVDENAIYTYVSPKVKDILGYEPQELLGRSPLDMMPPTE 937

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNV 545
            +          +F + + +     K L+ T         VLE S +P+ +A+        
Sbjct: 938  AERV-----IKIFTSFMAA-QQPFKCLENTNVRKDGCLVVLETSGVPVFDAEGKFCGYRG 991

Query: 546  TDSVRAERALTEKNEALRKA 565
             D     R   E N    + 
Sbjct: 992  MDRDITARKEVETNLYQTQQ 1011


>gi|83944133|ref|ZP_00956589.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
 gi|83845000|gb|EAP82881.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
          Length = 550

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 106/515 (20%), Positives = 202/515 (39%), Gaps = 65/515 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              TV+D +     +L  +   + + D +  L   N   +E        L   P      
Sbjct: 64  ARATVDDSVAQQLRVLK-MHTMVNVVDTDNLLVEVNDLLLEATGYTRQELIGKPV----- 117

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNPR----- 409
                   +    + +T    I  + +  ++   + T    +G T     T  P      
Sbjct: 118 -------AMLYSKDNRTTATEIRDLLRQGKSWQGETTLRNRDGSTCVTQTTVTPLLDANG 170

Query: 410 --GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSL 466
              G+I    ++T    L  + +T +     T+  L + + +   D   ++  N A ++ 
Sbjct: 171 RWIGSISARTDITSTTKLIARRDTAM-----TLHELRDDIWIVSEDNLELRYMNLAAKAR 225

Query: 467 WKTEENR--------LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +              ++      ++   C R  +  D +  F+A I+       + +G++
Sbjct: 226 FGWSTRPKNGQTVRDMAAERGCEDVLDACLRMMDIGDTYMTFSATISG-----TNFEGSI 280

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + L+   ++                      R    L +  E L + ++++  F+  VS+
Sbjct: 281 KWLNKGTVD---------------------GRLLIMLHDITERL-EQEQLQADFISMVSH 318

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELRSPLT+I G   LL +   G L  K    +E    ++  L+ ++NDILD+  + +G +
Sbjct: 319 ELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAHRNADRLVLIINDILDMEKISSGRL 378

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                T  L++L+ E  ++ AT      ++IK            D  R++Q+ + ++SNA
Sbjct: 379 DFELETADLSELVAESLRANATAHQRFGLQIKCHGVDTPTYIETDANRIIQVLTNLMSNA 438

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGL 756
             FS  G TV +   +   +   SV++ G  I  +    +F RF    N+ R  + G GL
Sbjct: 439 AKFSKPGGTVEISVDKTPENVCVSVRDEGMGIAPEDQHKIFQRFADMANSDRATKGGTGL 498

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI ++ +   GG +   S +   TT    +P K
Sbjct: 499 GLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLPVK 533


>gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 587

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 97/388 (25%), Positives = 175/388 (45%), Gaps = 24/388 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-----EENR 473
           +T+    E +Y  L +       ++S+ ++    +G +   +PA  +L  T     + + 
Sbjct: 173 VTLLSMEEERYRLLAR-------NMSDVISRHRRNGAVMFISPAVENLLGTSVAQLQGHG 225

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L    H+ +  A  +     + G +  +       D     +G    +    +E    PL
Sbjct: 226 LFERVHVADRPAYLTALSEAARGSEASSVEFRLRRDAGGDTRGPHHAVDFIWVEMRCRPL 285

Query: 534 PNA---------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             A         + +    +VTD    E+AL     A  +AD  K  F+  +S+ELR+PL
Sbjct: 286 DAAARTPSGAEQEVVAVMRDVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPL 345

Query: 585 TNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             IIGF+++L   +   LN+ ++ +Y + I+ S   LL++VN ILD++ +++G  +L   
Sbjct: 346 NAIIGFSEMLMQEQALVLNAARRREYAQLINDSGQHLLSVVNGILDMSKMESGNFELTPE 405

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
                  L      +A +  EN + +       L +   D +   QI   ++SNA+ F+ 
Sbjct: 406 PFAPRAALINCCNLLALRARENGVDLSADVPHDLPTITGDPRAFKQIVINLVSNAIKFTE 465

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           +G  V++ AA +    +  + + G  I  D  K + + F         +  G GLGLSIV
Sbjct: 466 RGGRVMVSAAIEGPQLLLRITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIV 525

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +S +NLHGG +SI S  +  TT++  +P
Sbjct: 526 KSLVNLHGGEMSIESKLDEGTTVSIALP 553


>gi|329955377|ref|ZP_08296285.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525780|gb|EGF52804.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 624

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 202/516 (39%), Gaps = 40/516 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S    +  +    + I  NL V I +++ +  L       ++L + +L         D L
Sbjct: 124 SASQVLQQRERLLHNIYKNLPVGIELYNIDGVL-------IDLNDKELEMFHLRRKEDLL 176

Query: 356 LEFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQT----LHVIVTSNPRG 410
              +      P+++  K  K EN    ++       +++ P  +T    L   VT+    
Sbjct: 177 GVNIFDNPVFPQEMKEKLRKYENADFTFRYDFAQVGSYYDPQTKTGTIDLVTKVTTLYDE 236

Query: 411 GTI-----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
             +      +  + T       K            ++   G A +       L+   +  
Sbjct: 237 KHVPTNYLLINADKTETTVAYNKIQEFESFFELIGNYAKVGYAHYN-----LLTRQGYAQ 291

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DS 524
                       T +  I    +  + + D  D+   +  +           + +L  D 
Sbjct: 292 HSWYINVGEQEDTPLSEIIGVYNHIHPD-DRHDMLRFLDNALKGTENKFNKEIRILRQDG 350

Query: 525 VLEYSIIPL------PNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQH 575
              ++ + L      P    +       D  R    E  L    E   ++D +K++F+ +
Sbjct: 351 NCSWTHVNLIVKVYAPEQNCIELICINYDITRLKDTEAMLILAKEKAEESDRLKSAFLAN 410

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  IIGF+ LL          ++ +Y+  I+ ++ +LLN++ND+LDL+ ++A
Sbjct: 411 MSHEIRTPLNAIIGFSGLL---PYIEDAEERDRYIALINHNNELLLNIINDVLDLSKIEA 467

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++L+   + L+DL++E        + E  + +K            D  R+ Q+ S ++
Sbjct: 468 GHIELSPVWLNLSDLIDESCTECQRNVPE-GVTLKTRYPAIPRLIEQDPMRIKQVLSNLV 526

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           SNA+  +++G  V +       +   SV + G  IP++    +F RF       Q  G G
Sbjct: 527 SNALKNTTQG-YVEISYETGQSEARISVSDTGCGIPQEKLGVIFERFEKTDSFVQ--GAG 583

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGLSI +S +    G + + S+    +T     P +
Sbjct: 584 LGLSICKSIVEHMNGRIEVISAVGEGSTFTVTFPCQ 619


>gi|297584464|ref|YP_003700244.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297142921|gb|ADH99678.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 603

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 161/367 (43%), Gaps = 26/367 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
             N   +     +  +++GV     DG + ++NP            L    ++   +   
Sbjct: 252 ALNQEKEQLSRILSSMADGVITLDRDGGVMVTNPPANEFIGAW---LYEQGYVTEESGQL 308

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                  +  +LF  +++    E +   G +++   S +   + PL +   +   V V  
Sbjct: 309 PE-----ELQNLFEKVVS----EEQEQMGEVDVQGRSWV-ILMTPLYDQYHVRGAVAVMR 358

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER            D+++  F+ +VS+ELR+P++ + G+++ +     GS + ++ 
Sbjct: 359 DMTEERL----------HDKLRKDFIANVSHELRTPISMLQGYSEAIIDDVAGS-DEEKK 407

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +  + I   S  +  LVN++LDLA ++AG ++LN   + + + +  + +       +NN+
Sbjct: 408 ELAQIIYDESLRMGRLVNELLDLARIEAGHIRLNLEPVNMTEFVERISRKFQGVADDNNV 467

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +    D        D  R+ Q+ + ++ NA+ ++S   +V L+       F   V++ G
Sbjct: 468 ELMGEIDQSDTEAYVDPDRIEQVMTNLIDNAIRYTSVNGSVKLRLEELPAGFRLDVEDTG 527

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           + IPE+    VF RF        R   G GLGL+IV++ +  H G VS  S     TT +
Sbjct: 528 AGIPEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHKGRVSAHSRMGEGTTFS 587

Query: 786 CRIPSKE 792
             +P  +
Sbjct: 588 VFLPFSQ 594


>gi|297569313|ref|YP_003690657.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925228|gb|ADH86038.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 597

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 140/280 (50%), Gaps = 15/280 (5%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L+ D+  +YSI      +   T  +      AE  L + N  L ++  +K+ F+ ++S+
Sbjct: 161 RLIEDNYRQYSINREKEQEYARTLESEIARQTAE--LRKANARLEESSRLKSEFLANMSH 218

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+  I GF  LL  +   SL++ Q +Y   I  SS  LL L+NDILDLA ++AG +
Sbjct: 219 ELRTPMNAITGFAQLLADT---SLDTTQQEYCRTIRQSSATLLALINDILDLAKIEAGRL 275

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
           +L      L++LL  V    +  + E  I I+V  D  L  +++ D  RL Q+ + ++ N
Sbjct: 276 ELEIVAFDLDELLESVAAMFSLSIREKGIAIQVRRDQGLPRAYLGDSHRLRQVLTNLVGN 335

Query: 698 AMDFSSKGSTVIL-------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           A+ F+  G   +L       +AAR      F V+++G  IP    +++F +F        
Sbjct: 336 AVKFTESGGVELLVESVAPPEAARQEQWLRFVVRDSGIGIPPHRLEAIFEKFTQADGSTT 395

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           RR  G GLGL+I    + L GG + + S +   +  +  I
Sbjct: 396 RRFGGTGLGLAICRQLVELMGGRIEVESLEGQGSCFSFTI 435


>gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 802

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/647 (18%), Positives = 227/647 (35%), Gaps = 60/647 (9%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-YKKNTETEGIVFQKAIGE 239
           T L        +     L +     VWH    G    A  +  ++   T   V+ +   E
Sbjct: 26  TRLLRTLFGGDVEAQITLVEGEGEGVWHSRGGGTPSAAQAAGVRELMRTGAPVWSEDCRE 85

Query: 240 SRKLFKEE-------IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
             +   +        ++    +   LE         +     + Y  V        A   
Sbjct: 86  DPRFLDDASVVGPPYVRFFAAAPIRLEDGSTPGALWVGGLEPRPYDRVLAARLQDLADTV 145

Query: 293 IDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            D    +   D      + L      L +++ + D+   + + +      W I    LA 
Sbjct: 146 ADEWARLRETDARRTYEKTLNAIIEALPISLVLTDREMRVLYASPP----W-ITGRGLAG 200

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL---PNGQTLHVIVT 405
                + L  LR          ++ W+E + +   +   +K        P+G    V   
Sbjct: 201 RQVTGKTLYELRPDM-------FEQWREGLEAAVAAGTGYKLDRRALPGPDGSVEWVKFE 253

Query: 406 SNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGET----------IDHLSEGVA 448
             P        GG I    ++T  V+   +     +               +D++   + 
Sbjct: 254 VTPWRDTEGQVGGLILASYDITEMVEALERTERSEERLRIAMQIADLHVYELDYVRRELT 313

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
             G +         +  L     N + P   +  + A    +  +   +      +   D
Sbjct: 314 KVGAEDTFFDRPRTYADLAANIWNAIDP-RDVAKVQAAWKAHVRDGAPY-YPEYRLRRGD 371

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                  GT  L +         PL   + +    NVT     ERAL    E    A+  
Sbjct: 372 GREVWAAGTARLTTGE----DGRPL---RLVGAMQNVTVRKAQERALVRAKEEAEAANRA 424

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+  +S+E+R+PL  ++G    +    +  L+  Q + ++ I  S   LL ++ND+L
Sbjct: 425 KSAFLATMSHEIRTPLNGVLGMAQAMA---MDELSPAQRERLDVIRQSGESLLAILNDVL 481

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           DL+ ++AG + L  +   + +L+  V  + A       +  ++ ++    G +  D  R+
Sbjct: 482 DLSKIEAGKLDLEEAEFDVEELVRTVHATFAAVAEAKGLGFEIAVARNARGLYRGDPIRV 541

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   ++SN + F+ +G+ V ++  R  G   F V++ G  I  +   ++F +F     
Sbjct: 542 RQILWNLVSNGLKFTDRGA-VEVRVRRAQGLLAFEVRDTGIGIAPEQLANLFRKFEQADA 600

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              RR  G GLGL+I      L GG ++  S+          +P ++
Sbjct: 601 STTRRFGGTGLGLAICRELAGLMGGEIAAESARGQGARFTVSLPLEK 647


>gi|160890817|ref|ZP_02071820.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
 gi|156859816|gb|EDO53247.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
          Length = 1034

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 176/408 (43%), Gaps = 23/408 (5%)

Query: 400 LHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETI---------DHLSEGVAV 449
              I+    +  T+ +F  ++T + D E     + K    T+           L EG+  
Sbjct: 489 YEFILCPASQKHTLDVFAVDITARKDAENTLREINKKLEMTLGIARIIPWRWDLKEGLIY 548

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
                 +   N         + + +    + R I        +      +   +    ++
Sbjct: 549 CEAQKILDHMNFTKEKNSTVQVDIIKASEYFRKIHPEDFERMHHVHENLISGKLQHIKEE 608

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-----VTDSVRAERALTEKNEALRK 564
            R   +     ++D +   ++I   +       +      +T+  R E AL    E  ++
Sbjct: 609 YRIITEVEGRKITDWMETNAVIDQRDKNGYPISLVGSLLLITERKRQEEALIRAREKAQE 668

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +D +K++F+ ++S+E+R+PL  I+GF+ LL  ++     +++ +++  I  ++ +LL LV
Sbjct: 669 SDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATEN---ETERKEFISIIETNNQLLLQLV 725

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ++ILDL+ ++A  ++ NY  + LN L  +V+ ++  ++    + ++ + +  +     + 
Sbjct: 726 SNILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRLQT-GVALQFVPEVPVCYVQTEH 784

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   +L NA  F+ KG  ++        +  F VK+ G  I  +  K +F RF  
Sbjct: 785 NRLSQVLINLLVNAAKFTEKGE-IMFGYKIRGEELYFYVKDTGIGISLENQKKIFERFTK 843

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
                Q  G GLGLSI ++ +    G + + S  +   +T    IP K
Sbjct: 844 VNTFIQ--GTGLGLSICKNIVTKMKGRIGVESEGEGKGSTFWFTIPYK 889


>gi|330873086|gb|EGH07235.1| two-component sensor/regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 576

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 117/523 (22%), Positives = 208/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 TQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLDAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L++LL+  
Sbjct: 342 KDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VSRAQVSILDGDWPVHSVPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1062

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 10/252 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+    R+E  L +  E+  +A+  K  F+ ++S+E+R+P+  IIG T L          
Sbjct: 369 NLHGRRRSEEELRQAKESAEEANRAKGEFLANMSHEIRTPMNAIIGMTQLALD---AGSP 425

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++  ++   S S+  LL ++NDILD + +DAG +++    + LN+L++ +    A+   
Sbjct: 426 EEKRDFIVKASRSAQSLLGIINDILDFSKIDAGRLEIETVPVSLNELISGLADVFASAAQ 485

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           +  I +    D  L  +   D  RL QI   ++SNA+ F+  G  V+    +        
Sbjct: 486 DKGIELLFDVDASLPAALAGDPLRLRQILQNLISNALKFTPAGEVVVRVEKVAELASGVA 545

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
             FSV++ G  I  +    +F  F         +  G GLGL+I +  + L GG + + S
Sbjct: 546 CRFSVRDTGIGIAAEQLPRLFQSFFQTDSSVTRKYGGTGLGLAISKRLVELMGGRIGVDS 605

Query: 777 SDEGVTTINCRI 788
                +     +
Sbjct: 606 QPGQGSCFWFEL 617


>gi|126657552|ref|ZP_01728708.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110]
 gi|126621256|gb|EAZ91969.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110]
          Length = 1497

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 115/673 (17%), Positives = 243/673 (36%), Gaps = 69/673 (10%)

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK------ 223
             L  +  EL     + +     ++      D+L      R     +++ +  +       
Sbjct: 693  ELQSVNEELYTVNAEHQSKIQELTQLNADIDNL-----LRSTDIGVIFLDRQFNIRKFTP 747

Query: 224  KNTETEGIVFQKAIGESRKLFK----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
              T    I           L        +   +   +  ++ + + V+     +    ++
Sbjct: 748  AATRAVNIKPSDIGRPLTDLTNNLNCPNLIDIVQQVATTQEPYEQEVTISPSHDYLLMRV 807

Query: 280  VRVLN----SFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFH 331
               L     S G     + V++   V   L     +L  L       + +FDQ       
Sbjct: 808  HPYLQNDKDSEGIVMTFVQVNELKQVQQHLKQANILLEKLYEASPAGLCLFDQELKFIRV 867

Query: 332  NRSFVELWEIDLAFLATNPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            N++   +  + +        +D   +L E+L    +             +  +  ++   
Sbjct: 868  NQALSRINGVSIEGHLGKTLHDIAPQLAEYLEGILQQVINTGEAICNIEVRGIMPATPEV 927

Query: 389  KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +  W      + + +   N   G   +   +T +V  E           E       G  
Sbjct: 928  ERCWIA----SYYPVDFINDGRGVGAVVVEITQRVQAEVALRNSQMRLQEAQRLAKVGNW 983

Query: 449  VFGPDGRIKLSNPA-------FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL-F 500
                +  + L+          +       +        I        R   E+    L F
Sbjct: 984  ELKYEENLTLATAKPDCSKELYEIYQLDPQPSSPSLEDILECYPPADRQALENAFQLLIF 1043

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFVNVTDSVRAERALTE 557
              I    D E    +  +  L+   +   +I   + Q +    T +++T+  R E+ L  
Sbjct: 1044 HGIPFGLDVELHISEQDIHSLN---VIGQVIRDKDGQILKFYGTVMDITERKRIEQELVR 1100

Query: 558  KNEALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +N+AL +A          ++ K+ F+ ++S+E+R+P+ +I+    LL+ +K   L+++Q 
Sbjct: 1101 RNQALEEAIAVAQVADSANQAKSEFLANMSHEIRTPINSIMLVGQLLEGTK---LDTQQK 1157

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + ++ ++ +S  LLN++NDIL L+ +++  ++L +    LN++  E+  +   +     I
Sbjct: 1158 KLLQTLTNNSNHLLNIINDILSLSKLESRSLELEHRPFHLNEMFQELSNTFTPQAQSKEI 1217

Query: 668  RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------D 718
             +       +    + D  RL Q+F  ++SNA+ F+S G  V + A+ D          +
Sbjct: 1218 GLTFTIASDVPDVLMGDDFRLQQVFRNLISNAIKFTSSG-QVTVNASCDRDSVSEKSQVN 1276

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              F+V++ G  I     + +F  FV   +   R   G GLGL+I    I    G + + S
Sbjct: 1277 LYFTVQDTGIGIDPAKQEDLFQPFVQADNSTTRQFGGTGLGLTICRRIIQTMNGEIGLDS 1336

Query: 777  SDEGVTTINCRIP 789
                 +T   +IP
Sbjct: 1337 IVGEGSTFWLKIP 1349


>gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 995

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 101/506 (19%), Positives = 191/506 (37%), Gaps = 39/506 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN-DELLE 357
             + +  T+       +   + + D N  +   N++  +    + + L           E
Sbjct: 362 KRLRESETNFRTFFDTIDHFLFVLDHNGLILKVNQTVTQRLGYEESELLGQHVLVIHPAE 421

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTS-----NPRGG 411
               A ++            I  +   + +         +G+ + V         N R  
Sbjct: 422 RRDEAGRI------------ITEMLAGTVSFCPVPLVCKDGRLIAVETQVVAGTWNGRPA 469

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV-FGPDGRIKLSNPAFRSLWKTE 470
              + ++++V  + E K++          +     +A+    DG     N AF       
Sbjct: 470 LFGITKDISVLQESEEKFSR-------AFNASPALMALSTLEDGVYLDVNEAFLQQSGFA 522

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            + +   + +       + Y    +   L        + +      +  LL        I
Sbjct: 523 RDEVIGKSSLE--LGLFTDYEQRLEMRRLLNEQQRVRNKKIVMRSKSGGLLYGLFSAELI 580

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                   +   V++TD V AE AL E  +A   A   K+ F+ ++S+E+R+P+  ++G 
Sbjct: 581 RLQQRDLLLTVMVDITDRVNAEHALLEAKQAAESASRAKSEFLANMSHEIRTPMNGVLGM 640

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +LL       L ++Q QY+  I +S   LL L+NDILDL+ ++AG ++L Y+   L   
Sbjct: 641 AELLA---FTDLTAEQEQYLACIKSSGDNLLALINDILDLSKIEAGKIELEYADFSLRKA 697

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +N+V  +  + +H   ++        L   V  D+ R  QI   +LSNA+ F+  GS  I
Sbjct: 698 INDVVTTQISAIHTKRLQFSCDLAEDLPEIVLGDQLRFKQILLNLLSNAIKFTDHGSVSI 757

Query: 710 ----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
               ++          +V + G  I  +  +++F  F        RR  G GLGL+I   
Sbjct: 758 SAELIECHSFQSFVRVTVADTGIGIQAEARQTIFAPFTQADSSTTRRFGGTGLGLAISRQ 817

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              L GG + + S     +     +P
Sbjct: 818 LAELMGGDIGLESEPGSGSRFYLDLP 843



 Score = 38.0 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL-TVQVDLETKYNTLVKVQGETIDHLSEG 446
             D  HL +   + ++ + +  G     F NL T     + +            D +   
Sbjct: 323 QIDPQHLADASPIKLL-SDDEVGRLAATFNNLLTEVAQTDKRLRESETNFRTFFDTIDHF 381

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           + V   +G I   N         EE+ L  G H+  I     R        ++ A  ++
Sbjct: 382 LFVLDHNGLILKVNQTVTQRLGYEESELL-GQHVLVIHPAERRDEAGRIITEMLAGTVS 439


>gi|253577301|ref|ZP_04854619.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843305|gb|EES71335.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 586

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 158/399 (39%), Gaps = 30/399 (7%)

Query: 401 HVIVTSNPRGGTIWMFEN-LTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V +      G + M  N +   +  +  +      +    + +++ G+ +      I L
Sbjct: 203 RVKLARKDEIGQLGMAINGMADSLQQQLKRIRDNEDLMQSVLANMTGGILMVDATEHIAL 262

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N     +  T+   L  G   + +     R Y      +   A   +  +ER       
Sbjct: 263 INRKAERILHTK-GELVLGKPYQEL----KRNYEFVKFMEEGIARKEAVQEERNVYDPE- 316

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               + +L +  +P+         +           L +    +RK + +++ FV +VS+
Sbjct: 317 ----EKILHFDGVPMFEDNGNYRGMLF---------LVQDVTEIRKLERMRSEFVANVSH 363

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+  + GF + L    +         +++ I      L  L+ D+L+L+ +++  +
Sbjct: 364 ELKTPIAAVKGFAETLLAGGVKD-EETTRSFLQIIYDEGDRLNRLIGDLLELSKIESKRV 422

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L Y+ + L++L + + + +     + +I +       L    AD  RL QIF  +LSNA
Sbjct: 423 PLEYAPVQLSELFDSLYEVLLPAAEKKSISMSHDVPEHL-FIEADEDRLRQIFMNLLSNA 481

Query: 699 MDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQR 751
           + +S +G  V + A+      D       V + G  IP+     +F RF           
Sbjct: 482 ISYSLEGGKVRVSASIIGEGGDEEKVRILVSDTGIGIPKKDLPRIFERFYRVDKARSRSS 541

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSIV+  ++LH G + + S     TT    +P 
Sbjct: 542 GGTGLGLSIVKHLVDLHRGTIRVESKVGEGTTFILELPL 580



 Score = 44.2 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 71/231 (30%), Gaps = 33/231 (14%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y + + +   V +        LF   +   +I+     +        LE     +++I R
Sbjct: 138 YIRLSMSLADVEEGLAQAWMWLFGALLVLFLIAGLVSYRVAAGLTKPLEQITRVAHRISR 197

Query: 282 V----------LNSFGEAGIAID------VSKEITVNDQLTHTYEILHNLTVAIAIFDQN 325
                       +  G+ G+AI+        +   + D       +L N+T  I + D  
Sbjct: 198 FDYDARVKLARKDEIGQLGMAINGMADSLQQQLKRIRDNEDLMQSVLANMTGGILMVDAT 257

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
            ++   NR    +       +   P   EL         + E +  K   +   +VY   
Sbjct: 258 EHIALINRKAERILHTKGELVLGKP-YQELKRNYEFVKFMEEGIARKEAVQEERNVYDPE 316

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNT 431
           E           + LH              G +++ +++T    LE   + 
Sbjct: 317 E-----------KILHFDGVPMFEDNGNYRGMLFLVQDVTEIRKLERMRSE 356


>gi|152995118|ref|YP_001339953.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836042|gb|ABR70018.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1121

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 103/508 (20%), Positives = 191/508 (37%), Gaps = 39/508 (7%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF--------LATNPSNDELLEF 358
                L      I   D    ++  N++  +++              L      DE    
Sbjct: 273 RLKTTLDTAVDGIISIDSLGIIKEFNKAATKIFGWQEEEIINQHFGALFPQKYTDEFNRS 332

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           L +     E     T +E I ++ K+   H     L  G+    +   +     +    +
Sbjct: 333 LAAFRNTGEVTIAGTERE-IHAINKTG--HIFPIRLGVGK----VDIPDSDTLFVGFITD 385

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++ +  LE       K     I ++       +          + A   +     +    
Sbjct: 386 ISTRKSLEETIKKSEKQFSSLIKNIPGASFRCLMDEHWTTIFVSDAIYDVTGWSTSEFYS 445

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSII 531
            T                D  +  A+ I    + RKS +    L         VLE   +
Sbjct: 446 KT-------ISFAKLVHPDDEENVASTIKEATNTRKSYKLEYRLRHKDGHYVWVLENGSV 498

Query: 532 PLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            L              +++  V  E  L +       + E K SF+ ++S+E+R+P+  I
Sbjct: 499 ILNKHGKPEWIDGVILDISQRVEMEDELRQAKAKAEASVESKASFLANMSHEIRTPMNAI 558

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF+D+L  S++   N K   ++  IS S+  LL+L+NDILD A ++   ++L+    VL
Sbjct: 559 IGFSDILLESEISGENKK---HLSIISKSARSLLHLLNDILDSAKLEKNKLELDIQPFVL 615

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            + ++ V  ++  +     + +    +  +  +++    R+ Q+   IL NA+ F+ KG 
Sbjct: 616 ANSVDTVISTLWLQARNKGLELNFNIEKDVAVAYLGAEDRIRQVLMNILGNAVKFTEKGH 675

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
             +      +G   FSV ++G  IPE+    +F+ F        RR  G GLG SI +  
Sbjct: 676 VTLNVLKLQDGKIRFSVTDSGIGIPEERLTHIFDPFTQADASMSRRFGGTGLGTSISKQL 735

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           + L GG + ++S  E  +     +P  E
Sbjct: 736 VTLMGGQIHVTSEAEVGSCFFFDLPLTE 763


>gi|58580321|ref|YP_199337.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578743|ref|YP_001915672.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58424915|gb|AAW73952.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188523195|gb|ACD61140.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 678

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/512 (19%), Positives = 196/512 (38%), Gaps = 53/512 (10%)

Query: 308 TYEILHNLTVAIAI----FDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFL 359
            +EI HN+     +    FD  + + +     N +F     +    L  +  +       
Sbjct: 32  YHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNALNISIRD------- 84

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWM 415
                LPE    + W +    V ++    H +       +   V    V    +G    +
Sbjct: 85  ----LLPEHE--QEWFDRYGLVARTGNRIHFEMQAKALKRWYSVDAFRVGRPDQGRVAVL 138

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F ++T +  +E +            D L   V V    G ++  N A+   +  + +  +
Sbjct: 139 FMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT 198

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIP 532
                    +  S   +  D       +  S  ++R           D     +E +  P
Sbjct: 199 --------VSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQWRWIEMTATP 250

Query: 533 LPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYEL 580
             +A      +  +     E R +    E L +++            +K+ F+  +S+EL
Sbjct: 251 RYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHEL 310

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT I+G+++LL         +   + +  I++S+     L++D+LDL+++  G ++L
Sbjct: 311 RTPLTTILGWSELLLQRVEEGHTT--YKGLSVIASSARAQKRLISDMLDLSSMLLGKVQL 368

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              ++ L + + E   +        +  +++         + D  RL Q+   +LSNA+ 
Sbjct: 369 EVESLDLAEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLLSNAIK 428

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           F+     + +   RD+G  + SV ++G  I  +    +F RF        R   G+GLGL
Sbjct: 429 FTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGL 488

Query: 759 SIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           +IV+  + +HGG V  +S       T   R+P
Sbjct: 489 AIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 22/166 (13%)

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           GR       +  + +        E     ++L+   + F  L D L   VW  D  G + 
Sbjct: 128 GRPDQGRVAVLFMDIT-------ERKRVERELAESEARFSALADGLPMPVWVLDAQGVVR 180

Query: 217 WANISYKK------NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
           + N +Y +      ++ T     +    +    F+ E+   +     L            
Sbjct: 181 FVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRH--- 237

Query: 271 HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYE 310
            G  +  ++             G AG + DV+++  +        E
Sbjct: 238 DGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 283



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 65/216 (30%), Gaps = 27/216 (12%)

Query: 241 RKLFKEEIKKRMIS-SSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFGEAGIAIDV 295
           R L  E  ++                         + Y +    V   +    A + +D+
Sbjct: 83  RDLLPEHEQEWFDRYGLVARTGNRIHFEMQAKALKRWYSVDAFRVGRPDQGRVAVLFMDI 142

Query: 296 SKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDL------AF 345
           ++   V  +L  +      L   +     + D    ++F N ++ E + +D+      A+
Sbjct: 143 TERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAW 202

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTW--KENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                 +D        A  L EQ   +           ++  E      +  +G+ +   
Sbjct: 203 SELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFI--- 259

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                  G      ++T Q ++E     L++ +   
Sbjct: 260 -------GLAGSSPDVTEQREIELAREQLLESERSA 288


>gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 605

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 162/379 (42%), Gaps = 21/379 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L +       H+ + ++    +G ++  +PA  SL     + L        +  
Sbjct: 199 ENRYRLLAR-------HMCDVISRHRRNGAVQFISPAAESLLGVPVSELQGHGLFDRVHV 251

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------VLEYSIIPLP----- 534
                Y  +           S +   +    +              +E    PL      
Sbjct: 252 ADRPAYLTALAAAALGKGAQSVEFRLRRDAASDAEFEGHPSGNFIWVEMRCQPLEPSSPA 311

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + +    +VTD  + E AL     A  +AD  K  F+  +S+ELR+PL  IIGF+D++
Sbjct: 312 EPEVVAVMRDVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSDMI 371

Query: 595 KTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                  L++ ++ +Y + I+ S   LL++VN ILD++ +++G  ++        ++L  
Sbjct: 372 VQEATLPLDATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLS 431

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               +A K  +N+I +       L   V D +   QI   ++SNA+ F+ +G  V + A 
Sbjct: 432 GSNLLALKARDNDIELVTRVPENLPQMVGDPRAFRQIVLNLVSNAIKFTERGGRVTISAR 491

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
            +    +  V +NG  I ++  K + + F         +  G GLGLSIV+S + LHGG 
Sbjct: 492 VEGARMVLRVVDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGE 551

Query: 772 VSISSSDEGVTTINCRIPS 790
           + + S  E  TT+   +P 
Sbjct: 552 IDVQSKVEEGTTVTVMLPL 570


>gi|329576539|gb|EGG58046.1| sensor protein kinase WalK [Enterococcus faecalis TX1467]
          Length = 609

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 157/387 (40%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L+ +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 234 GQLAETFNQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLN 293

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   +  GT +  +      Y       +    +I     +R+  Q  +       +++
Sbjct: 294 VKNENV-IGTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIR------VDF 346

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           ++I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 347 TMIRRESGFITGLVCVLHDVTEQE-----------KNERERREFVSNVSHELRTPLTSMR 395

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L      +       +++     +  ++ ++ND+L+L+ +D+G   L    +  N
Sbjct: 396 SYIEALSEGAWEN-PEIAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFN 454

Query: 649 DLLNEVKQSIATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   + N +I+     +      D  +++Q+   IL+NA+ +S  G 
Sbjct: 455 ELINFVLDRFDMMIENEQKNYKIRREFTKREFWVELDTDKVIQVLDNILNNAIKYSPDGG 514

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            +  +    + + +FS+ + G  IP+     VF RF        R   G GLGL+I +  
Sbjct: 515 VITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEV 574

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G + + S++   +T    +P +
Sbjct: 575 IRAHNGSIWVESTEGEGSTFYISLPYE 601


>gi|194333604|ref|YP_002015464.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311422|gb|ACF45817.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 599

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 168/396 (42%), Gaps = 28/396 (7%)

Query: 399 TLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           T  +    N   G +   F  ++ ++    +     +        + E + V  P G I 
Sbjct: 215 TFRLDGKRNDEIGQLSRAFNFMSDEM---KRMGQQEEWFKAVFSSIREAIIVTDPRGSII 271

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L+NPA   L+K     L  G  +R   +   R    +   DLF  +  S     K     
Sbjct: 272 LANPAACKLFK-----LQCGDMLR---SRPGRKVTNAQLLDLFERVRLSSKPIVKEEMLV 323

Query: 518 LELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +    + VL+ S +P + ++ +  T   + D  R           LR  + I+  FV  V
Sbjct: 324 MTERGERVLQTSAMPVIKDSYSDGTVFVLNDITR-----------LRNLERIRRDFVSSV 372

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT+I G+T+ L    L         ++  I   S  L  L+ND+LDL+ +++G
Sbjct: 373 SHELRTPLTSIKGYTETLLEGALDD-REDAMNFLRIILQESEQLTALINDVLDLSKIESG 431

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++  ++ + + D++ +        + + +I +++   G L    AD+  L  +   +L 
Sbjct: 432 RIEYKFTPVSIEDVVLKTVALFRRSLEKKSIDLQIQIPGDLPPVFADKDYLEIVVRNLLD 491

Query: 697 NAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRG 753
           NA+ + +     + + A   N      V++NG+ IP+     +F RF         Q  G
Sbjct: 492 NAIKYVADDSGRIRIIAFPANDMVRLEVEDNGAGIPQKDLGRIFERFYRVDKARSRQIGG 551

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGLSIV+  +  H G+V + S     +  +  IP
Sbjct: 552 TGLGLSIVKHIVLSHKGNVEVRSRQNLGSVFSITIP 587


>gi|17229180|ref|NP_485728.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17135508|dbj|BAB78054.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 676

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 168/387 (43%), Gaps = 41/387 (10%)

Query: 411 GTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G   + +++     LE    N L + Q      L+  +        + ++       +  
Sbjct: 323 GFTLVIDDIETAYALEECLLNFLRESQVRA--KLAAPIIFEDKLWGLLIA----HQCYNP 376

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            +   S    + +IA   +   ++S+       ++ S  D  + L    + L   V+E +
Sbjct: 377 RQWHDSDKNLLISIAEQLAIAIHQSE-------LMRSLQDSAQRLTQEKQTLEQRVIERT 429

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +                       AL +   A   A  +++ F+  +S+EL +PLT +IG
Sbjct: 430 M-----------------------ALRDALLAAEAASRLRSEFLATISHELLTPLTYVIG 466

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +  L    LG L+ +Q  Y++ I  S   LL+++NDILDL+ ++AG   LN +   L  
Sbjct: 467 MSSTLLRWPLGELSQRQRDYLQTIHDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLVK 526

Query: 650 LLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +     +S+  K    + N+++ +  D +   F AD  R+ QI   +L+NA+ F+ +G  
Sbjct: 527 IAENTIESLLEKALSEQVNLKLDLQIDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGN 586

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           V L+   +    IF V++ G  IPE+    +F +F       R +  G GLGL++ +  +
Sbjct: 587 VTLRIWVEEDTSIFQVEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLV 646

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            LH G + + S+    +     IP +E
Sbjct: 647 ELHRGRIEVESTVGIGSIFTVWIPYQE 673


>gi|307152733|ref|YP_003888117.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306982961|gb|ADN14842.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1751

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 171/400 (42%), Gaps = 34/400 (8%)

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            N  G  ++  + L           T +      +D+L++G+ V    G I   NPA  S+
Sbjct: 1356 NQLGVGVYQAQLLEQTQQQSNILQTTLADLNAIVDNLADGLLVTDIHGFITRFNPALLSM 1415

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +   +N    G H+  + +            DL   +      +++ +   +EL S    
Sbjct: 1416 FNLTDN--LKGKHLSEVLSL-----------DLANLVRKIGRQQKEIVTAEVELGSGR-- 1460

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              S   L ++     F +  +       L     + R+ D +K  F+  VS+ELR+PLT+
Sbjct: 1461 --SGQALVSSIFQENFGDEEEPCLGSVILIRDVTSEREVDRMKTEFLATVSHELRTPLTS 1518

Query: 587  IIGFTDLLKT--------------SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            ++GFT L++               +++     K  Q ++ I + +  L  L+ND+LD+A 
Sbjct: 1519 VLGFTSLIQEKLEEVIFPAISSDETRVKKARKKVGQNIKIIISEAERLTALINDVLDIAK 1578

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            ++AG M+ N  +  + ++L     +      +  I +       L +   D+ R++Q+  
Sbjct: 1579 MEAGRMEWNIKSTSVVEILETASAATYPLFDKKKIDLIKDFPLNLPNIWVDKNRMIQVVI 1638

Query: 693  KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
             +LSNA+ F+ +GS V   A  ++   + S+ + G  I E+    +F RF    +    +
Sbjct: 1639 NLLSNAVKFTDEGS-VTCCAKLEDDQLVISITDTGIGIAENEQSKIFERFQQGGNILTDK 1697

Query: 751  RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              G GLGL I +  +  HGG + + S+    +T    +P 
Sbjct: 1698 PTGTGLGLPICKQIVEYHGGKIWVISAPHQGSTFFFSLPL 1737


>gi|183220873|ref|YP_001838869.1| putative sensory transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910970|ref|YP_001962525.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775646|gb|ABZ93947.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779295|gb|ABZ97593.1| Putative sensory transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 914

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/516 (18%), Positives = 205/516 (39%), Gaps = 24/516 (4%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAI--FDQNRYLQFHNRSFV--ELWEIDLAFLAT 348
           ++++  I    +L     +L  +     I  +D +      N + +   + E++  ++  
Sbjct: 245 LNMTDSIQSEMELRSISRLLDQMANLAKIGGWDLDLKTNQANWTNITKRIHEVEEDYIPN 304

Query: 349 NPSNDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
             +       E  R+      +      KE    +   +     TW   NG+        
Sbjct: 305 VENGLSFYHSEESRNKITTAVEALISEGKEYDLELEMVTAKGNQTWIRTNGRAEWENGKV 364

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G I   +++  + + E    +   +    ++H    VA+   + R    +  +   
Sbjct: 365 VKIYGII---QDINERKEWEMALASQTSILWSFVEHAPAAVAMLDQEMRYVALSQRWIDD 421

Query: 467 WKTE--ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSD 523
           +K    +  +    H   I       + E     L   ++   +D  R       +++  
Sbjct: 422 YKIPLSKEEIIGKCHY-EIFPNIGEAWKEIHARGLLGEVLKRDEDIWRPPGWDKDQVIQW 480

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +  ++++       ++   ++T+S   +  L +  E    A   K+ F+ ++S+E+R+P
Sbjct: 481 EIRPWTLLSGGIGGILMFTRDITESYETKLELKKAKELAENAYNAKSEFLANMSHEIRTP 540

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIG++DLL  +    +++  ++Y + +  S+  LL++VNDILD +  +AG ++L   
Sbjct: 541 LNGIIGYSDLLAETL---VDTSFNEYAQIVKQSAHTLLSIVNDILDFSKAEAGKLQLAEV 597

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFS 702
              L +L+ E  + +  +   + + I++  D  + +  + D  RL Q+   ++ NA+ F+
Sbjct: 598 PNDLKNLILEAIKIMDIQAIVHGLDIRLHIDESIPNVLMFDSNRLRQVMLNLIGNAIKFT 657

Query: 703 SKGS-----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
             G      T +  A +       SVK+ G  I ++  K +F+ F        R   G G
Sbjct: 658 ETGFIECRLTRLESAIKQEVKVRISVKDTGIGIAKENQKKIFDSFTQEDFSTTRKFGGTG 717

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL+I    + L    + + S     +     IP +
Sbjct: 718 LGLAICRQLLQLMKSELKLKSEVGQGSEFFFEIPFR 753



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 65/173 (37%), Gaps = 24/173 (13%)

Query: 290 GIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           GI  D+++    E+ +  Q +  +  + +   A+A+ DQ       ++ +++ ++I L+ 
Sbjct: 369 GIIQDINERKEWEMALASQTSILWSFVEHAPAAVAMLDQEMRYVALSQRWIDDYKIPLSK 428

Query: 346 LATN--------PSNDELLEFLRSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLP 395
                       P+  E  + + +   L E  + +   W+   +   +  +     W L 
Sbjct: 429 EEIIGKCHYEIFPNIGEAWKEIHARGLLGEVLKRDEDIWRPPGWDKDQVIQWEIRPWTLL 488

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           +G            GG +    ++T   + + +     ++     +  SE +A
Sbjct: 489 SG----------GIGGILMFTRDITESYETKLELKKAKELAENAYNAKSEFLA 531


>gi|293370018|ref|ZP_06616585.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634936|gb|EFF53458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 570

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 163/375 (43%), Gaps = 16/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +ET      +   + +D+++  + V   D  ++  +N  FR              
Sbjct: 202 TKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPENAECWR 261

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +        ++  +    D                      ++        + +     
Sbjct: 262 MLNAGLENGCKHCPKPKLLDANRKFT------GVHFWEDYNPVTKRWYTIQSMAIKWLDG 315

Query: 539 MLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 316 RWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL 375

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L   +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV
Sbjct: 376 AETDEAEL---RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREV 432

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + + K  +  + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +  +  
Sbjct: 433 IATFSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLE 492

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D     F V + G  IP++    +FNRFV        +G GLGLSI +S +N  GG + +
Sbjct: 493 DESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSF--VQGAGLGLSICQSLVNRMGGKIGV 550

Query: 775 SSSDEGVTTINCRIP 789
            S +   +      P
Sbjct: 551 ESREGEGSCFWFTHP 565


>gi|229058211|ref|ZP_04196599.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
 gi|228720075|gb|EEL71659.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
          Length = 591

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 168/367 (45%), Gaps = 29/367 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + +  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEVELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++ V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N    F V+++G
Sbjct: 463 QLTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + IPE+    +F+RF        R    G GLGL+I ++ +  H G + +SS     T  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTIF 582

Query: 785 NCRIPSK 791
           +  +P++
Sbjct: 583 SVYLPNR 589


>gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 993

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 161/364 (44%), Gaps = 17/364 (4%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +D ++ G+ +    GRI  +N     L   E   L  G  I ++             W+
Sbjct: 188 ALDTITVGLVLLNSKGRILFTNRRLNQLLSQESADL-MGKKIDDLEWQMIADTGAVLPWE 246

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                  S  D          +L+ SV   +  P+     ++TF ++T     + AL + 
Sbjct: 247 EAKQNDDSVMDRILQFDNNGRMLTFSV---NCTPIAGQGYLVTFEDITLIEENKVALAKA 303

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +A   A+  K+ F+ ++S+E+R+PL  ++GFTD+L+   + + + +   ++  I  S  
Sbjct: 304 RDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVSNGD-EAVDHLNMIHRSGA 362

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+NDILDL+ +++G ++       L+D++ +V  ++  K  E N+ +KV     + 
Sbjct: 363 HLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAIP 422

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------NGDFIFSVKNNGS 728
            +  +D  RL Q+ + ++ NA+ F+  GS  I+ +            +      + + G 
Sbjct: 423 RTIQSDPTRLRQVITNLVGNAIKFTESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTGI 482

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  D    +F+ FV       R   G GLGLSI        GG +++ S     +T   
Sbjct: 483 GMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFRV 542

Query: 787 RIPS 790
            +P+
Sbjct: 543 ELPT 546



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 112/334 (33%), Gaps = 40/334 (11%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           TH    L  +TV + + +    + F NR   +L   + A L     +D   + +     +
Sbjct: 183 THVENALDTITVGLVLLNSKGRILFTNRRLNQLLSQESADLMGKKIDDLEWQMIADTGAV 242

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--TLHVIVTSNPRGGTIWMFENLT--- 420
              L W+  K+N  SV        +     NG+  T  V  T     G +  FE++T   
Sbjct: 243 ---LPWEEAKQNDDSVMDRILQFDN-----NGRMLTFSVNCTPIAGQGYLVTFEDITLIE 294

Query: 421 ----VQVDLETKYNTLVKVQGETIDHLSE----------GVAVFGPDGRIKLSNPAFRSL 466
                              + + + ++S           G       G +   + A   L
Sbjct: 295 ENKVALAKARDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVSNGDEAVDHL 354

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                     G H+  +            G      I TS DD    +  TL++ +D   
Sbjct: 355 NMIH----RSGAHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKAD--- 407

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E ++    + +T +     +D  R  + +T       K  E  +  V  V+  L++P   
Sbjct: 408 EQNLALKVDFRTAIPRTIQSDPTRLRQVITNLVGNAIKFTESGS--VSIVTSLLKTPSNA 465

Query: 587 IIGFTDLLK----TSKLGSLNSKQSQYVEYISAS 616
           + G+  +++     + +G    +Q++  +    +
Sbjct: 466 LEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQA 499


>gi|87307716|ref|ZP_01089859.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87289330|gb|EAQ81221.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 636

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 9/243 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L   N  L + + +K+ F+ ++S+ELR+PL +I+GF+D+L    + SLN KQ +YV+ I
Sbjct: 341 ELARVNVQLYEMNRVKSDFLANMSHELRTPLNSILGFSDVLSD--IDSLNDKQKRYVQNI 398

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S  +LL+++NDILDLA +++G M++  S   +  ++      + + + E N+ ++   
Sbjct: 399 QKSGRLLLDMINDILDLAKIESGRMEVRPSEFSVAAVVRANCDMVRSLIEEKNLDLECDV 458

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                    D+ +L QI + +LSNA+ F+ +G  +  + +R+      +V++ G  I E+
Sbjct: 459 HDGGEPMFQDQTKLQQILTNLLSNAIKFTPEGGRITCRVSREADMMKLAVEDTGVGIAEE 518

Query: 734 MCKSVFNRFVSNAHR-------GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + +F +F   A          +  G GLGLSIV     L  G + + S     +T   
Sbjct: 519 DREIIFEKFRQGAVSPRNDSLTREFSGTGLGLSIVMEICKLLDGSIEMESQLGSGSTFTI 578

Query: 787 RIP 789
           RIP
Sbjct: 579 RIP 581


>gi|237718051|ref|ZP_04548532.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229452692|gb|EEO58483.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 538

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 162/375 (43%), Gaps = 16/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +ET      +   + +D+++  + V   D  ++  +N  FR              
Sbjct: 170 TKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFRKEAGEVPANAECWR 229

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +        ++  +    D                      ++        + +     
Sbjct: 230 MLNAGLENGCKHCPKPKLLDANRKFT------GVHFWEDYNPVTKRWYTIQSMAIKWLDG 283

Query: 539 MLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 284 RWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL 343

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L   +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV
Sbjct: 344 AETDEAEL---RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREV 400

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + + K  ++ + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +     
Sbjct: 401 IATFSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLE 460

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D     F V + G  IP++    +FNRFV      Q  G GLGLSI +S +   GG + +
Sbjct: 461 DESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVKRMGGKIGV 518

Query: 775 SSSDEGVTTINCRIP 789
            S +   +      P
Sbjct: 519 ESREGEGSCFWFTHP 533


>gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 2654

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 113/662 (17%), Positives = 234/662 (35%), Gaps = 47/662 (7%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-- 226
              + G   ++ E  L    LS      +++  S+   ++  D  G   + N +       
Sbjct: 1406 RRMVGTVQDITERKLMEAALSESEERSRLILTSVTDGIFGMDAQGCTTFVNPAAAAMLGY 1465

Query: 227  ---ETEGIVFQKAIGESRKLFKEEIKKR--MISSSALEKNFCETVSTLEHGNNKSYKIVR 281
               E  G++    +  S         ++  M ++ A       T   L H +  ++ +  
Sbjct: 1466 REDELTGMLMHDTVHHSHPDGSPYAHEQCPMRAAFAEGAVRVITDEVLWHKDGHAFPVEY 1525

Query: 282  VLNS-------FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQF 330
                        G   +  D+++      +L  + +     L    + +  +        
Sbjct: 1526 TAVPMQKRGKRVGAVVVFRDITQRKADEKRLAESEQRLVLALQGANLGLWDWQAETGSLI 1585

Query: 331  HNRSFVELWEIDLAFLATNPSND-ELLEFLRSANKLPEQLNW-----KTWKENIFSVYKS 384
             N  +  +       L     N  E    L  A+ LPE         +   E   + Y+ 
Sbjct: 1586 TNDIWSAMIGYTKEALDARYGNTFERWLALVHADDLPETQQRLEAHLRGETEEFRAEYRM 1645

Query: 385  -SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
             +E+ +  W L  G+ +        +   + + +++        +      +  + +D  
Sbjct: 1646 LTESGEWKWILDIGRGVEWDEQGVAK-RLVGIHQDIDALKRSAEQLRLANFLSDQALDLS 1704

Query: 444  SEG---VAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
              G   V +   DG    S  A          + R               +  + +   +
Sbjct: 1705 QAGYWHVPLTAEDGYYNSSERAAAVFGDPPRPDWRYHVMDEWFANVEAGDKLASAATLAN 1764

Query: 499  LFAAI------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
              AAI        S    ++ L G +  +                     +++T S  A 
Sbjct: 1765 FTAAINGTVPRYDSIYAYKRPLDGKVVWIHAMGHVERDEQGKATDMYGITMDITASKLAA 1824

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             A+ +  E    A++ K+ F+ ++S+E+R+P+  IIG + L   +    LN +Q  Y+  
Sbjct: 1825 DAIQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQT---DLNGRQRNYITK 1881

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            +  S+  LL ++NDILD + ++AG + + +    L D+L+ +   +  K  E  + +   
Sbjct: 1882 VKRSAEALLGIINDILDFSKIEAGKLTMEFIDFRLEDVLDNLSNLVGLKAEEKGLELHFS 1941

Query: 673  SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727
                L +    D  RL Q+   + +NA+ F++ G  V+    L+   +     FSVK++G
Sbjct: 1942 LPPGLHTALKGDPLRLGQVLINLGNNAVKFTAHGDVVVKVQQLERTTERIKLYFSVKDSG 2001

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              +  +    +F  F        R   G GLGL+I +  + +  G + + S  E  +  +
Sbjct: 2002 IGMTPEQKGLLFKSFSQADASTTRKFGGTGLGLAISKRLVEMMEGEIDVDSVPEQGSDFH 2061

Query: 786  CR 787
              
Sbjct: 2062 FS 2063



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 97/271 (35%), Gaps = 15/271 (5%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            S+ + +N         L +++  + + DQ   +   N  ++ L ++    +      + +
Sbjct: 1169 SRTMALNRASEGLNLALSSMSNGLIMLDQALTILIVNGHYLSLLQLPETLVGVGKPIEPV 1228

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            + +L         ++ ++         +  ++     + P+ +++ V       GG ++ 
Sbjct: 1229 VRYLVVRGDYG-AVDEESMVRQQLQSMRQQQSGNIELNTPDRRSIDVHQAPTETGGMVFT 1287

Query: 416  FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENR 473
              ++T +   E + N  ++        ++    +        + N  +  +  +  +E  
Sbjct: 1288 LTDVTERKRSEERLNLALEGGSLGYWDVN---LITDE----MVVNQRWAEMLGYGLDEIS 1340

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELL--SDSVLEYS 529
                           R    + G D  A ++  ++ E ++    GT   L    +++E+ 
Sbjct: 1341 PVLRQTWLETIHPEDRELVLARGNDYRAGVLDRYEVEYRARAKDGTARWLVSRGAIMEHQ 1400

Query: 530  IIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
                P  + + T  ++T+    E AL+E  E
Sbjct: 1401 EDGQP-RRMVGTVQDITERKLMEAALSESEE 1430


>gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
 gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
          Length = 1969

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 197/550 (35%), Gaps = 75/550 (13%)

Query: 297  KEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +      +L  + E L     + + AI + D    + + N +  +++             
Sbjct: 921  EAEASRQELLQSEERLRCITDSASDAILMMDPQGAISYWNPAATQIFGYAAE-------- 972

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL----PNGQTLHVI----- 403
            + L   L      P+ +         F    +      T  L     +G+ + +      
Sbjct: 973  EALGRNLHELLAPPKHIKSHLSAFPEFLRSGTGAAVNKTVELSAICKDGREIPIALSLSA 1032

Query: 404  VTSNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVA-------- 448
            V  N     + +  +++     E +            + + + ++ L + VA        
Sbjct: 1033 VQLNASWHAVAIVRDISEAKQHEAELLEAKQRAEQSEQAKTQVLEQLEDMVANRTRELKQ 1092

Query: 449  -------VFGP---------DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                   +F           D  I   N     ++      +      R   A+ S+Y  
Sbjct: 1093 SNLKLQAIFDAASSGIAQIKDRTIIRCNRRMEEIFGYGPGEMLN-LSTRVWYASDSQYLK 1151

Query: 493  ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVR 550
              +      A +     E  S    L     S          L       TFV++ D V 
Sbjct: 1152 VGEQVKEAMARL----GEYSSGDILLRRKDGSRFWARSKAKKLQLEGAENTFVSMFDDVT 1207

Query: 551  AER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            AER    AL    E+  +A++ K+SF+ ++S+E+R+P+  IIG   LLK         +Q
Sbjct: 1208 AEREAAEALRLAKESAEEANQAKSSFLANMSHEIRTPMNAIIGLAHLLKRDA----TPQQ 1263

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
               +E +S ++  LL ++NDILD + ++AG M L      L ++++ V+  ++ K  +  
Sbjct: 1264 VGQLEKVSDAAQHLLRIINDILDFSKIEAGKMILEPMDFELENVIDTVRSLLSEKAVDKG 1323

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIF 721
            +               D  RL QI     +NA+ F++ GS + L A +   +       F
Sbjct: 1324 LEFITNIADLPQYLHGDGLRLGQILLNFAANAVKFTTNGS-ISLHAEQLGEESDTIWIRF 1382

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            +V + G  + E   + +F  F        R   G GLGL+I     +L GG + + S   
Sbjct: 1383 TVSDTGVGMTEAQQRHLFEAFEQGDRSTTRQFGGTGLGLAISRKLTDLMGGEIGVKSEPG 1442

Query: 780  GVTTINCRIP 789
              +     +P
Sbjct: 1443 SGSKFWVDLP 1452



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
                + +    D       + + G  +P+ +   +F+   +    G   G GLGLSI  
Sbjct: 2   EAQGRITICTGSDAHTICVEISDTGCGMPQSVIDKIFDPLFTTNPVGL--GTGLGLSIYA 59

Query: 763 SFINLHGGHVSISSSDEGV 781
             +  H G ++++S     
Sbjct: 60  DNMRRHSGTIAVNSVIGDG 78



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 92/319 (28%), Gaps = 64/319 (20%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
                E     ++L       + + DS    +   D  G I + N +    T+  G   ++
Sbjct: 917  QANREAEASRQELLQSEERLRCITDSASDAILMMDPQGAISYWNPA---ATQIFGYAAEE 973

Query: 236  AIGESR-KLFK---------EEIKKRMISSSALEKNFCETVSTLEHGNNKS-----YKIV 280
            A+G +  +L               + + S +    N    +S +     +         V
Sbjct: 974  ALGRNLHELLAPPKHIKSHLSAFPEFLRSGTGAAVNKTVELSAICKDGREIPIALSLSAV 1033

Query: 281  RVLNSFGEAGIAIDVSKEITVNDQL-----------THTYEILHNLTVAIAIFDQNRYLQ 329
            ++  S+    I  D+S+      +L               ++L  L   +A  ++ R L+
Sbjct: 1034 QLNASWHAVAIVRDISEAKQHEAELLEAKQRAEQSEQAKTQVLEQLEDMVA--NRTRELK 1091

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW----------KTWKENIF 379
              N     +++   + +A           +R   ++ E   +          + W  +  
Sbjct: 1092 QSNLKLQAIFDAASSGIAQIKDRT----IIRCNRRMEEIFGYGPGEMLNLSTRVWYASDS 1147

Query: 380  SVYKSSETHKDTW-------------HLPNGQTLHVIVTSN------PRGGTIWMFENLT 420
               K  E  K+                  +G        +            + MF+++T
Sbjct: 1148 QYLKVGEQVKEAMARLGEYSSGDILLRRKDGSRFWARSKAKKLQLEGAENTFVSMFDDVT 1207

Query: 421  VQVDLETKYNTLVKVQGET 439
             + +         +   E 
Sbjct: 1208 AEREAAEALRLAKESAEEA 1226



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 56/170 (32%), Gaps = 6/170 (3%)

Query: 410  GGTIWMFENLTVQVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            G  +   E L    + E     L+   +      D  S+ + +  P G I   NPA   +
Sbjct: 907  GMVLLTQERLQANREAEASRQELLQSEERLRCITDSASDAILMMDPQGAISYWNPAATQI 966

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +               +A       + S   +   +   +  ++   L    +   +  +
Sbjct: 967  FGYAAEEALGRNLHELLAPPKHIKSHLSAFPEFLRSGTGAAVNKTVELSAICKDGREIPI 1026

Query: 527  EYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
              S+  +    +   +    +++++ + E  L E  +   ++++ K   +
Sbjct: 1027 ALSLSAVQLNASWHAVAIVRDISEAKQHEAELLEAKQRAEQSEQAKTQVL 1076


>gi|6687470|emb|CAB64973.1| VicK protein [Enterococcus faecalis]
          Length = 611

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 156/387 (40%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L+ +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 236 GQLAETFNQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLN 295

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   +  GT +  +      Y       +    +I     +R+  Q  +       +++
Sbjct: 296 VKNENV-IGTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIR------VDF 348

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           ++I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 349 TMIRRESGFITGLVCVLHDVTEQE-----------KNERERREFVSNVSHELRTPLTSMR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L      +       +++     +  ++ ++ND+L+L+ +D+G   L    +  N
Sbjct: 398 SYIEALSEGAWEN-PEIAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFN 456

Query: 649 DLLNEVKQSIATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   + N +I      +      D  +++Q+   IL+NA+ +S  G 
Sbjct: 457 ELINFVLDRFDMMIENEQKNYKICREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGG 516

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            +  +    + + +FS+ + G  IP+     VF RF        R   G GLGL+I +  
Sbjct: 517 VITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEV 576

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G + + S++   +T    +P +
Sbjct: 577 IRAHNGSIWVESTEGEGSTFYISLPYE 603


>gi|27378251|ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351398|dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 776

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 108/524 (20%), Positives = 214/524 (40%), Gaps = 52/524 (9%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
                L+     +  +D +R   F ++S   +  +D          +ELL F    N L 
Sbjct: 250 RIDTALNRGRCGLWDWDLSRGRIFWSQSMFSMLGLDG--------RNELLTFG-EVNALV 300

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVT-------SNPRGGTIWMFE 417
           +  +   ++     + +  +    T+ +   +G  + + V        ++     I +  
Sbjct: 301 KSDDIDLFEIADQLISEKIDHIDQTFRMQHVDGHWIWLRVRCEKTSGATDSSVHLIGIAV 360

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q  L  +         + I+ + E   ++    R+ L N  F+ L K  ++ + PG
Sbjct: 361 DITEQKSLAERTVEADLRLRDAIETIPEAFVLWDASDRLVLCNSHFQRLHKLPDSAVIPG 420

Query: 478 THIRNIAATCS------RYYNESDGWDLFAAIITSFDD-------ERKSLQGTLELL--- 521
           T    +           R+   +             DD       ER++  G    +   
Sbjct: 421 TSYETVLEVGRMPEVRTRHNETAAQGPGARTFEAQLDDGSWLHISERRTKDGGYVSVGTD 480

Query: 522 -------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                        +D  L  ++I L  +Q  L       +  AE+    +     +A++ 
Sbjct: 481 ITRIKEHEQKLVDNDLRLRATVIDLKRSQAALERQTNELADLAEKY-QREKTRAEEANQT 539

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+ELR+PL  IIGF++++ +   G L + K  +Y + I  S   LL ++NDI
Sbjct: 540 KSKFLANMSHELRTPLNAIIGFSEIMGSGLFGELGSEKYQEYCQDILTSGHYLLEVINDI 599

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ ++AG MKL+   + L   L E  + ++ +  + ++ +    +  + S VADR+  
Sbjct: 600 LDMSKIEAGRMKLDMEELDLARTLAESLRVVSGRAQDKHLTLDADIEKSI-SVVADRRAT 658

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +LSNA+ F+  G  +++++ + +   +  + + G  I       +   F     
Sbjct: 659 KQIIVNLLSNAVKFTPDGGRIVVRSRQLDDRIVLMIADTGIGIAPHSLARLGRPFEQVES 718

Query: 748 --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  G GLGL+I  S   LHGG + + S  +  T +   +P
Sbjct: 719 QLTKTYHGSGLGLAIARSLAQLHGGSMRLRSKIDVGTVVRVTLP 762



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 14/158 (8%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+D++++ ++ ++         + +  +  A  ++D +  L   N  F  L ++  +
Sbjct: 356 IGIAVDITEQKSLAERTVEADLRLRDAIETIPEAFVLWDASDRLVLCNSHFQRLHKLPDS 415

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +    S + +LE      ++PE            +  +          L +G  LH+  
Sbjct: 416 AVIPGTSYETVLEV----GRMPEVRTRHN-----ETAAQGPGARTFEAQLDDGSWLHISE 466

Query: 405 TSNPRGGTIWMFENLTVQVDLETKY-NTLVKVQGETID 441
                GG + +  ++T   + E K  +  ++++   ID
Sbjct: 467 RRTKDGGYVSVGTDITRIKEHEQKLVDNDLRLRATVID 504


>gi|218438944|ref|YP_002377273.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218171672|gb|ACK70405.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 633

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/415 (22%), Positives = 174/415 (41%), Gaps = 33/415 (7%)

Query: 402 VIVTSNPRGGTIW-MFENLTVQV--------DLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           + +TSN     +   F ++T ++        D   + +         +D + + + VF  
Sbjct: 217 ITITSNDELEVLAESFNSMTSRLRELIARIQDRAEQLHQSESKNRALLDAIPDLILVFNQ 276

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +G +           +T EN          I       +       LF  I  +   +  
Sbjct: 277 EGILLDCK------CQTNENTPLSLPFKSIIGKKIDEVFAHDSAELLFFHIKEALTCKTL 330

Query: 513 SLQGTLELLSDSVL--EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +    + + D  L  E  I+     + +    ++T +  A+    +  EA   A++ K 
Sbjct: 331 QVCEYEQFIGDEKLYYETRIVVSGEGEVLAIIRDITKNKLAQAEWQQAKEAAEAANQAKT 390

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+  +S+ELR+PL  I+G + LL      +      + ++ I+ S   LL L+ DILD+
Sbjct: 391 AFLASMSHELRTPLNGILGLSQLLLEDAQEAGYLDFIEDLQQINQSGLHLLGLIEDILDI 450

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + ++AG M L   T  ++ L+ EV  +I   + +N   +++     LG  VADR+R+ QI
Sbjct: 451 SKIEAGKMILYPETFDVSLLITEVVNTIQPLIKKNGNSLQIKFSNPLGPMVADRKRVKQI 510

Query: 691 FSKILSNAMDFSSKGSTVILKAARD-------------NGDFIFSVKNNGSSIPEDMCKS 737
              +LSNA  F+ +G  ++L   R              +   +FSV + G  + ++    
Sbjct: 511 LINLLSNAAKFTEQG-KILLTVNRQVFNETPQPSINSPSTWLVFSVIDTGIGMTQEQISK 569

Query: 738 VFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F  FV           G GLGLSI + F  + GG++++ S     +     +P+
Sbjct: 570 IFQPFVQADSSTTKKYGGTGLGLSICQRFCEMMGGYITVESQVNVGSAFTVGLPA 624


>gi|288959296|ref|YP_003449637.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911604|dbj|BAI73093.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 919

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 158/385 (41%), Gaps = 27/385 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D E +            D+ ++ +     DG ++  +P+ R +   +   +   +    +
Sbjct: 234 DSERRLGESEARYRLLADNATDMILELKADGSVRYLSPSVRDILGHDPAEIVGHSPANLL 293

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TM 539
                     +       +   +F    +   G         +E S+ P   +      +
Sbjct: 294 HPDDLDAAALAFAGLKSGSPTVTFTHRLRHRDGHY-----LWVESSMRPAVGSDGGFVVI 348

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               +VT+  R E  L+        A  +K+ F+  +S+E+R+PL  +IGF DLL  ++ 
Sbjct: 349 GVVRDVTERKRYEGELSAARAEAEAATRVKSEFLASMSHEIRTPLNGVIGFADLLLATE- 407

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q QYV     +   LL ++ DILD + ++AG ++L      L+ LL + +  ++
Sbjct: 408 --LTPEQRQYVALQREAGRGLLAIIGDILDYSKIEAGKLELEERAFDLHRLLRDCRDLMS 465

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               +  + +++   G +  FV  D  R+ QI   ++ NA+ F+ +GS V++      G 
Sbjct: 466 NAASQKGLLLQLSLAGSVPRFVHGDEARIRQILLNLVGNAVKFTERGS-VLVSVGLLTGP 524

Query: 719 -----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
                        FSV + G  IP     ++F RF        RR  G GLGL I +  +
Sbjct: 525 GEGGGEGAPVLLRFSVSDTGPGIPPADQANLFQRFSQGDRSTTRRYGGTGLGLIISKQLV 584

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L  GH+ + SS    +T    +P 
Sbjct: 585 ELMRGHIGVQSSPGVGSTFWFELPL 609


>gi|239617944|ref|YP_002941266.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506775|gb|ACR80262.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 417

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  + T ++    + +  +K     +D+L + + +   +GR++  N + + L K+++   
Sbjct: 59  LIRDKTEEI---KRVSEKLKYMENVLDNLGDALFITDAEGRVEFINKSAKELVKSQDLLG 115

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I +         +      +    +T F  +R+              E   IP+ 
Sbjct: 116 KKMNEIIDNYYIVDLLEDAVKSGSVQQTNLTIFHPKRR------------FYECKAIPVS 163

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + +   + + D    ER L          + ++  FV +VS+ELR+PLT+I G+ + L
Sbjct: 164 YGEKIHCLLILRDIT-MERNL----------ELMRREFVSNVSHELRTPLTSIHGYAETL 212

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L        +++  I   S  +  L+ND+LDL  ++AG ++L    + L+++   V
Sbjct: 213 LEYDLSD-EETVRKFLRIIEGESARMTRLINDLLDLEKLEAGDIQLVLEDVELSEVGEYV 271

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS---SKG-STVIL 710
            + ++    E  + I    +  +     D  RL+Q+   ++ NA+ ++     G   V +
Sbjct: 272 IKIVSPLAEELGVSIYEDMERGV-FVEGDFDRLVQLTLNLVDNAVKYTSVKEHGPKEVWI 330

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
           +    N   +  V++ G  IPE+  K +F RF         +  G GLGL+IV+     H
Sbjct: 331 RVYTANNYAVLEVEDTGIGIPEEARKHIFERFYRVDKARSRKMGGTGLGLAIVKLIAEKH 390

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG VS+ S     TT   R+P K+
Sbjct: 391 GGTVSLDSEFGNGTTFKVRLPLKK 414



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 107/274 (39%), Gaps = 17/274 (6%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           + + + + + T + K++S  +   + + D+L   ++  D  G + + N S K+  +++ +
Sbjct: 54  NAVRTLIRDKTEEIKRVSEKLKYMENVLDNLGDALFITDAEGRVEFINKSAKELVKSQDL 113

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
           + +K      ++        ++  +    +  +T  T+ H   + Y+   +  S+GE   
Sbjct: 114 LGKKM----NEIIDNYYIVDLLEDAVKSGSVQQTNLTIFHPKRRFYECKAIPVSYGEKIH 169

Query: 292 AIDVSKEITVNDQLTHT-YEILHNLTVAIAIFDQNRYLQFHN-RSFVE-LWEIDLAFLAT 348
            + + ++IT+   L     E + N++               +   + E L E D   L+ 
Sbjct: 170 CLLILRDITMERNLELMRREFVSNVS-------HELRTPLTSIHGYAETLLEYD---LSD 219

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             +  + L  +   +    +L                   +D      G+ +  IV+   
Sbjct: 220 EETVRKFLRIIEGESARMTRLINDLLDLEKLEAGDIQLVLEDVELSEVGEYVIKIVSPLA 279

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
               + ++E++   V +E  ++ LV++    +D+
Sbjct: 280 EELGVSIYEDMERGVFVEGDFDRLVQLTLNLVDN 313


>gi|117925745|ref|YP_866362.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609501|gb|ABK44956.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1128

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 166/378 (43%), Gaps = 25/378 (6%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
              +     +     + ++S+G  +    GRI  +NPA  S      +++          
Sbjct: 256 ASRRIAHSRRWMNSILQNMSQGFVMMDLQGRILEANPALLSWVALSPSQVQ--------G 307

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI---IPLPNAQTMLT 541
               +  +  D   L  A+    + +      +L  L    +   +           ++ 
Sbjct: 308 EPFQKLLSVQDHQPLQLALQQLLEGQPVRCALSLCCLDAPPIPVQMHGNTHRDEEGQIMG 367

Query: 542 FVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
              +   +RAE+A    L +  +A  +A + K  F+ ++S+E+R+P+  I+G T L   +
Sbjct: 368 IYAILTDIRAEQAAAKALRDARDAAEQASQAKGEFLANMSHEIRTPMNAILGMTHLCLQT 427

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN +Q  ++E + A+ + LL ++NDILD + ++AG +++  +++ ++++L  +   
Sbjct: 428 ---DLNERQRHFLEKVYAAGSALLRILNDILDFSKIEAGSLEIEKTSLKMDEVLASLADL 484

Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
           ++ +  E  I +    D  L    V D  RL Q+   ++ NA+ F+ +G  V    ++++
Sbjct: 485 MSIRADEKKIELLFHRDANLPEILVGDPLRLGQVLINLVGNALKFTEQGEVVVRIEVIQS 544

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           A       FSVK+ G  +  +   ++F  F        RR  G GLGL+I    + L GG
Sbjct: 545 AERQVKVRFSVKDTGIGLTNEQMSNIFQSFKQADSSTTRRYGGTGLGLAISHRLVQLMGG 604

Query: 771 HVSISSSDEGVTTINCRI 788
            + + S+    +  +  +
Sbjct: 605 VLKVESTPGQGSCFSFTL 622


>gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
           DM4]
 gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens DM4]
          Length = 703

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 151/379 (39%), Gaps = 19/379 (5%)

Query: 418 NLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++T  +     +     +     ++  +E V      GRI  ++  F +L          
Sbjct: 38  DMTEALQDRLWQIAESEERYRVLVEATTEAVVQRDGQGRITFASAGFAALLGM------- 90

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +  I +T S    E    +  A  +   ++    + G     S   +  S   +   
Sbjct: 91  -KPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMPVSGS-VDGP 148

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +VT  V A R L E       A+  K+ F+  VS+ELR+PL  I+G  DLL  
Sbjct: 149 NWLRAGQDVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLD 208

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+ +Q  YVE    S   LL LV+ ILD + ++AG + L      +  L+  V +
Sbjct: 209 TR---LDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVE 265

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
            +A +  +  + I +     L +  V D  R+ QI   +  NA+ F+  G  V +  AR 
Sbjct: 266 LLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAGG-VGVSLARS 324

Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                   + +V++ G  IPE+    +F  F          G GLGL+I    +    G 
Sbjct: 325 GEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGT 384

Query: 772 VSISSSDEGVTTINCRIPS 790
           +   S+    +T    +P 
Sbjct: 385 IEARSTVGRGSTFRVVLPL 403



 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 166 LRILSLDGIYSELAE-TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LR        S++ E    +  +++     ++VL ++    V  RD  G I +A+  +  
Sbjct: 27  LRRREPVVPESDMTEALQDRLWQIAESEERYRVLVEATTEAVVQRDGQGRITFASAGFAA 86

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
               + +           L  + I++      A      E       G  + +  + +  
Sbjct: 87  LLGMKPLEL-----IGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMPV 141

Query: 285 SFGEAGI-----AIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S    G        DV+  +     L           VA + F
Sbjct: 142 SGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAANVAKSRF 184


>gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2]
 gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2]
          Length = 609

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/388 (22%), Positives = 159/388 (40%), Gaps = 32/388 (8%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLV-KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  +T ++      N    +     + ++S+GV      GR+ L N    ++  
Sbjct: 237 GRLSVAFNYMTGRLREALSQNEEEKEKLSSILTNMSDGVVATDDHGRVILVNRRASAMLG 296

Query: 469 TEENRLSPGTHIRNIAATCSR----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             EN ++ G HI  +           Y+ S    L        D+               
Sbjct: 297 VNENEMT-GRHIAVLLGIDPEETEALYSGSSASTLLQLEPAGQDEPI------------- 342

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+  +  P+   +  +T          E+          + +  +  FV +VS+ELR+PL
Sbjct: 343 VIRVTFTPIHRREFGITGTIAVLQDVTEQE---------EMETTRREFVANVSHELRTPL 393

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I  + + L    +        ++V  I   +  ++ LV D+L L+ +D+    L    
Sbjct: 394 TTIRSYAEALDDGAMAE-PQLAERFVGVIRNETERMIRLVTDLLHLSRLDSNEAPLRMQP 452

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + ++L+EV    + +M EN+IR  +  +  +G  V DR ++ Q+   ++SNA+ ++ +
Sbjct: 453 ADVMEMLDEVADRFSFQMKENHIRSGMFVEQGIGKVVIDRDQIDQVLDNLMSNALKYTPE 512

Query: 705 GSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
           G ++ ++A R+N G    SV++ G  IP+     +F RF            G GLGLSI 
Sbjct: 513 GGSIRIEARRNNEGMLAISVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGGTGLGLSIA 572

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  HGG + + S     T     +P
Sbjct: 573 REIVKAHGGQIFLESEYGQGTCTTFTLP 600



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                  ++      IL N++  +   D +  +   NR    +  ++   +         
Sbjct: 252 EALSQNEEEKEKLSSILTNMSDGVVATDDHGRVILVNRRASAMLGVNENEMTGRH----- 306

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                     PE+        +  ++ +     +D   +       +        GTI +
Sbjct: 307 --IAVLLGIDPEETEALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTIAV 364

Query: 416 FENLTVQVDLETKYNT 431
            +++T Q ++ET    
Sbjct: 365 LQDVTEQEEMETTRRE 380


>gi|295112753|emb|CBL31390.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           sp. 7L76]
 gi|315145505|gb|EFT89521.1| PAS domain S-box [Enterococcus faecalis TX2141]
 gi|315162568|gb|EFU06585.1| PAS domain S-box [Enterococcus faecalis TX0645]
          Length = 609

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 158/387 (40%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L+ +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 234 GQLAETFNQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLN 293

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   +  GT +  +      Y       +    +I     +R+  Q  +       +++
Sbjct: 294 VKNENV-IGTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIR------VDF 346

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           ++I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 347 TMIRRESGFITGLVCVLHDVTEQE-----------KNERERREFVSNVSHELRTPLTSMR 395

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L      +       +++     +  ++ ++ND+L+L+ +D+G   L    +  N
Sbjct: 396 SYIEALSEGAWEN-PEIAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFN 454

Query: 649 DLLNEVKQSIATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   + N +I+     +      D  +++Q+F  IL+NA+ +S  G 
Sbjct: 455 ELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQVFDNILNNAIKYSPDGG 514

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            +  +    + + +FS+ + G  IP+     VF RF        R   G GLGL+I +  
Sbjct: 515 VITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEV 574

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G + + S++   +T    +P +
Sbjct: 575 IRAHNGSIWVESTEGEGSTFYISLPYE 601


>gi|237746376|ref|ZP_04576856.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377727|gb|EEO27818.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 907

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 117/642 (18%), Positives = 226/642 (35%), Gaps = 85/642 (13%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL------------FKEEIKKRMISS 255
             D+     W N  +   T      F +  G  R                E    R + +
Sbjct: 12  RVDEDLSFCWGNARFFGMTAFTEEAFVRHFGGLRPFYAACPECAGDFALIESALSRAVKA 71

Query: 256 SALEKNFCETVSTLEHG-------------NNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
                     +     G                +  +V VL       +A D  ++  + 
Sbjct: 72  GNASVEMEIRLPGKAGGFSWIKLSGTVSSDETGAPLLVAVLTDIN--ALAADWEEQARLA 129

Query: 303 DQLTHTYE-ILHNLTVAIAIFDQNR-YLQFHNRSFVELWEIDLAFLATNPSNDELL---- 356
            +    +  ++      + + D     L + NR+  E   +    +      + +     
Sbjct: 130 GEHWRYFRWMMDEFAGNVYVSDMETCELLYLNRTACETLGVSAERVLGRKCFEVIQGRQS 189

Query: 357 -------EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                  + LR          +  W E    V + +   ++      G+ + + ++ +  
Sbjct: 190 PCPFCTNDRLRENG-------FCNW-EFFNPVLERAFMIRNRVIEWEGRPVRLELSHD-- 239

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPA-FRSLW 467
                MF   + +  L  K    + + G     +  G       D R  L   A F ++ 
Sbjct: 240 -----MF---SAEYKLAKKDRERLALVG----SMPGGFVRLDARDYRTVLWYGADFLNVI 287

Query: 468 KTEENRL-------SPGTHIRNIAATCSRY--YNESDGWDLFAAIITSFDDERKSLQGTL 518
                +            H  ++    SR    + +    +    I +   E K L  TL
Sbjct: 288 GYTAEQFENELHSQCTYVHPDDLKRIVSRLETVDTTGENIVTEVRIITRSGEMKYLNMTL 347

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              S     +  IP   +  M       +  R  RAL E   A R A E K +F+  +S+
Sbjct: 348 CYASAED-SWDGIPSFYSVGMDVTEQREEQARQRRALEEAYHAARVASEAKTNFLSSMSH 406

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ++R+P+  I+G   L+  + L S   + +  ++ IS SS  LL+L+N+ILD++ +++G +
Sbjct: 407 DIRTPMNAIMGMA-LIAQTNLAS-PERVADCLDKISVSSRHLLSLINEILDMSKIESGRI 464

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSN 697
            L    + L +L+  V       + E  +   V +   +  + V D  RL Q+   +LSN
Sbjct: 465 DLVAEEVSLPELIRNVMGMCQPLLREKGLEFHVSASQVRHENIVIDGGRLQQVLMNLLSN 524

Query: 698 AMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749
           A+ ++ +G TV              G + F V++NG  +P      +F  F         
Sbjct: 525 AVKYTPEGGTVGFVVRELPTGIKKRGQYEFVVEDNGIGMPAAFLPHLFEPFSRAEDPRIS 584

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + +G GLG++I E+ + +  G +++ S  E  +     +P +
Sbjct: 585 RIQGTGLGMAIAENIVRMMNGTITVESEPEKGSRFTVSLPFE 626


>gi|227518448|ref|ZP_03948497.1| histidine kinase [Enterococcus faecalis TX0104]
 gi|229546128|ref|ZP_04434853.1| histidine kinase [Enterococcus faecalis TX1322]
 gi|229550317|ref|ZP_04439042.1| histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|255973089|ref|ZP_05423675.1| sensory box histidine kinase VicK [Enterococcus faecalis T1]
 gi|255976128|ref|ZP_05426714.1| sensory box histidine kinase VicK [Enterococcus faecalis T2]
 gi|256618777|ref|ZP_05475623.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200]
 gi|256762197|ref|ZP_05502777.1| sensory box histidine kinase VicK [Enterococcus faecalis T3]
 gi|256852842|ref|ZP_05558212.1| VicK protein [Enterococcus faecalis T8]
 gi|256958686|ref|ZP_05562857.1| PAS [Enterococcus faecalis DS5]
 gi|256962216|ref|ZP_05566387.1| PAS [Enterococcus faecalis Merz96]
 gi|256965406|ref|ZP_05569577.1| PAS [Enterococcus faecalis HIP11704]
 gi|257077960|ref|ZP_05572321.1| PAS [Enterococcus faecalis JH1]
 gi|257082849|ref|ZP_05577210.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol]
 gi|257085547|ref|ZP_05579908.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|257086547|ref|ZP_05580908.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis D6]
 gi|257089604|ref|ZP_05583965.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis CH188]
 gi|257415811|ref|ZP_05592805.1| PAS [Enterococcus faecalis AR01/DG]
 gi|257422895|ref|ZP_05599885.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis X98]
 gi|293383243|ref|ZP_06629159.1| sensory box histidine kinase VicK [Enterococcus faecalis R712]
 gi|293387602|ref|ZP_06632148.1| sensory box histidine kinase VicK [Enterococcus faecalis S613]
 gi|294781109|ref|ZP_06746459.1| PAS domain S-box [Enterococcus faecalis PC1.1]
 gi|300860119|ref|ZP_07106207.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|307273519|ref|ZP_07554762.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|307274482|ref|ZP_07555665.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|307279012|ref|ZP_07560070.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|307288505|ref|ZP_07568491.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|307291177|ref|ZP_07571062.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|312903944|ref|ZP_07763113.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|312907169|ref|ZP_07766160.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|312909788|ref|ZP_07768636.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|312951045|ref|ZP_07769953.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|227074126|gb|EEI12089.1| histidine kinase [Enterococcus faecalis TX0104]
 gi|229304580|gb|EEN70576.1| histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|229308652|gb|EEN74639.1| histidine kinase [Enterococcus faecalis TX1322]
 gi|255964107|gb|EET96583.1| sensory box histidine kinase VicK [Enterococcus faecalis T1]
 gi|255969000|gb|EET99622.1| sensory box histidine kinase VicK [Enterococcus faecalis T2]
 gi|256598304|gb|EEU17480.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200]
 gi|256683448|gb|EEU23143.1| sensory box histidine kinase VicK [Enterococcus faecalis T3]
 gi|256711301|gb|EEU26339.1| VicK protein [Enterococcus faecalis T8]
 gi|256949182|gb|EEU65814.1| PAS [Enterococcus faecalis DS5]
 gi|256952712|gb|EEU69344.1| PAS [Enterococcus faecalis Merz96]
 gi|256955902|gb|EEU72534.1| PAS [Enterococcus faecalis HIP11704]
 gi|256985990|gb|EEU73292.1| PAS [Enterococcus faecalis JH1]
 gi|256990879|gb|EEU78181.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol]
 gi|256993577|gb|EEU80879.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|256994577|gb|EEU81879.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis D6]
 gi|256998416|gb|EEU84936.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis CH188]
 gi|257157639|gb|EEU87599.1| PAS [Enterococcus faecalis ARO1/DG]
 gi|257164719|gb|EEU94679.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis X98]
 gi|291079421|gb|EFE16785.1| sensory box histidine kinase VicK [Enterococcus faecalis R712]
 gi|291082934|gb|EFE19897.1| sensory box histidine kinase VicK [Enterococcus faecalis S613]
 gi|294451787|gb|EFG20239.1| PAS domain S-box [Enterococcus faecalis PC1.1]
 gi|300850937|gb|EFK78686.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|306497831|gb|EFM67363.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|306500580|gb|EFM69911.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|306504137|gb|EFM73349.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|306508876|gb|EFM77963.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|306509796|gb|EFM78823.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|310626197|gb|EFQ09480.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|310631000|gb|EFQ14283.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|310632664|gb|EFQ15947.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|311289746|gb|EFQ68302.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|315027747|gb|EFT39679.1| PAS domain S-box [Enterococcus faecalis TX2137]
 gi|315031522|gb|EFT43454.1| PAS domain S-box [Enterococcus faecalis TX0017]
 gi|315035062|gb|EFT46994.1| PAS domain S-box [Enterococcus faecalis TX0027]
 gi|315147676|gb|EFT91692.1| PAS domain S-box [Enterococcus faecalis TX4244]
 gi|315151378|gb|EFT95394.1| PAS domain S-box [Enterococcus faecalis TX0012]
 gi|315154082|gb|EFT98098.1| PAS domain S-box [Enterococcus faecalis TX0031]
 gi|315157369|gb|EFU01386.1| PAS domain S-box [Enterococcus faecalis TX0043]
 gi|315158432|gb|EFU02449.1| PAS domain S-box [Enterococcus faecalis TX0312]
 gi|315165411|gb|EFU09428.1| PAS domain S-box [Enterococcus faecalis TX1302]
 gi|315166595|gb|EFU10612.1| PAS domain S-box [Enterococcus faecalis TX1341]
 gi|315169876|gb|EFU13893.1| PAS domain S-box [Enterococcus faecalis TX1342]
 gi|315172773|gb|EFU16790.1| PAS domain S-box [Enterococcus faecalis TX1346]
 gi|315578293|gb|EFU90484.1| PAS domain S-box [Enterococcus faecalis TX0630]
 gi|323480427|gb|ADX79866.1| histidine sensor kinase [Enterococcus faecalis 62]
 gi|327534819|gb|AEA93653.1| sensor histidine kinase [Enterococcus faecalis OG1RF]
          Length = 609

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 157/387 (40%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L+ +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 234 GQLAETFNQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLN 293

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   +  GT +  +      Y       +    +I     +R+  Q  +       +++
Sbjct: 294 VKNENV-IGTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIR------VDF 346

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           ++I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 347 TMIRRESGFITGLVCVLHDVTEQE-----------KNERERREFVSNVSHELRTPLTSMR 395

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L      +       +++     +  ++ ++ND+L+L+ +D+G   L    +  N
Sbjct: 396 SYIEALSEGAWEN-PEIAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFN 454

Query: 649 DLLNEVKQSIATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   + N +I+     +      D  +++Q+   IL+NA+ +S  G 
Sbjct: 455 ELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGG 514

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            +  +    + + +FS+ + G  IP+     VF RF        R   G GLGL+I +  
Sbjct: 515 VITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEV 574

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G + + S++   +T    +P +
Sbjct: 575 IRAHNGSIWVESTEGEGSTFYISLPYE 601


>gi|261418255|ref|YP_003251937.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767785|ref|YP_004133286.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374712|gb|ACX77455.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112651|gb|ADU95143.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 582

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 145/369 (39%), Gaps = 22/369 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++              I+++  G+      G I L N AF++ +  + +      +    
Sbjct: 231 EMSRAREIQTDRLHTLIENVGSGLLFIDHRGHISLINRAFQTQFHLDPSDCLHRPY---- 286

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               +      D       I  +    R+ ++ T+ +      +    P+         +
Sbjct: 287 ----ADVLPHGDIVRFIDDIFITETTMRRHMRLTIGIERKH-FDVYGAPIIGTNAEWKGI 341

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V      E         L++ ++I+  FV +VS+EL++P+T+I GF + L    +    
Sbjct: 342 VVVFHDITE---------LKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAMKD-E 391

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +    ++  I   S  L  LV ++LDL+ ++    +L    + +  ++ E       K  
Sbjct: 392 AALEHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAA 451

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I + + S   L     DR R+ QI   +L+NA+ ++ +   V ++A     + +  V
Sbjct: 452 EKQIDLHIESPSGL-VIRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEETEKEVLIHV 510

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I E     +F RF            G GLGL+IV+  +  H G+++++S     
Sbjct: 511 KDTGIGIEEKEIPRIFERFYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRG 570

Query: 782 TTINCRIPS 790
           T      P 
Sbjct: 571 TVFTIHFPK 579



 Score = 41.5 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A  + +     + Q    + ++ N+   +   D   ++   NR+F   + +D +     
Sbjct: 225 LARHLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHISLINRAFQTQFHLDPSDCLHR 284

Query: 350 P-----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           P      + +++ F+             T + ++         H D +  P      +I 
Sbjct: 285 PYADVLPHGDIVRFIDDIFITE-----TTMRRHMRLTIGIERKHFDVYGAP------IIG 333

Query: 405 TSNPRGGTIWMFENLTVQVDLET 427
           T+    G + +F ++T    LE 
Sbjct: 334 TNAEWKGIVVVFHDITELKRLEQ 356


>gi|113474471|ref|YP_720532.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
 gi|110165519|gb|ABG50059.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
          Length = 395

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 147/316 (46%), Gaps = 24/316 (7%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-- 554
            D+ A I++++DD    L      ++    ++   P+      +T     ++V+  +   
Sbjct: 78  PDIKAVIVSAYDD----LDKIRSAMNRGAFDFLTKPIDFQDLEITIQKTLENVQQLKENK 133

Query: 555 -LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++      A+  K+ F+ ++S+ELR+PL  IIG++++L        +      +  I
Sbjct: 134 RLKQEKHEAEAANRAKSVFLANMSHELRTPLNAIIGYSEILLEDAHSLGSKDFIHDINNI 193

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL ++NDILDL+ ++AG M +++ ++ +  L+  V  +I   + +NN  +++I 
Sbjct: 194 HTSGKHLLTIINDILDLSKIEAGKMDVHWESVNIMVLIENVLATIQPLIEQNNNILEIIC 253

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD-------------- 718
           +      +AD  ++ Q+   +LSNA  F+  G  ++ +K A ++ D              
Sbjct: 254 EDNQEPIMADPNKMRQVILNLLSNAAKFTENGKIILKVKVANNDEDFISQNRDCNFTDKV 313

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            I SV + G  I E+   S+F  F    +   R   G GLGL+I   F  + GG +++ S
Sbjct: 314 LILSVADTGIGISEEKIDSLFQPFTQADNSTTRKYGGTGLGLAISRHFCKMMGGDITVVS 373

Query: 777 SDEGVTTINCRIPSKE 792
                +    + P  +
Sbjct: 374 EVNKGSIFTVKFPVPQ 389


>gi|325288684|ref|YP_004264865.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964085|gb|ADY54864.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 584

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 169/396 (42%), Gaps = 28/396 (7%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V S    G +      L+ Q+    T+ +   +     +  +S+GV     +GR+ L
Sbjct: 212 RVTVQSRDEMGVLGTSLNYLSEQLKKNMTELSYEKEKIENILIGMSDGVITVDIEGRVVL 271

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NP  + L        +         A  S          LF+ ++   +  ++ +    
Sbjct: 272 INPQAKHLLNMSNLEKNSRIDKDENLARLSS---------LFSGVLAQKEQAKEEI---- 318

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            ++++  L   + PL +   ++    +        A+ +      K ++++  FV +VS+
Sbjct: 319 -MINEKNLTVRLSPLFDPSQLILTGVI--------AVLQDTTREYKLEQMRRDFVANVSH 369

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ I G+ + L      S   +Q Q+++ I   S  L  LV D+L+L+ + +G  
Sbjct: 370 ELRTPISLIQGYAEALADHVEDS-PVQQDQFMKIIIEESNRLKRLVEDLLELSRLQSGKA 428

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L    I L  +  +VK+       + NI+ K   +   G+  AD+    QI   ++ NA
Sbjct: 429 DLEKEEINLFQVSEQVKEKYDQLFIQRNIKFKAEINQDAGTVWADKFMFEQIVLNLIDNA 488

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + ++  G T+ L +AR        + + G  I E+    +F RF        R   G GL
Sbjct: 489 ICYAP-GGTITLTSARTQKGIELCLSDTGKGISEEDLPYLFERFYRADKSRNRESGGTGL 547

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLSIV++ +  HGG +S+ S     T  + + P ++
Sbjct: 548 GLSIVKNLVQAHGGIISVESEAGKGTKFSLKFPFQD 583


>gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 993

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 161/364 (44%), Gaps = 17/364 (4%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +D ++ G+ +    GRI  +N     L   E   L  G  I ++             W+
Sbjct: 188 ALDTITVGLVLLNSKGRILFTNRRLNQLLSQESADL-MGKKIDDLEWQMIADTGAVLPWE 246

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                  S  D          +L+ SV   +  P+     ++TF ++T     + AL + 
Sbjct: 247 EAKQNDDSVMDRILQFDNNGRMLTFSV---NCTPIAGQGYLVTFEDITLIEENKVALAKA 303

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +A   A+  K+ F+ ++S+E+R+PL  ++GFTD+L+   + + + +   ++  I  S  
Sbjct: 304 RDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVSNGD-EAVDHLNMIHRSGA 362

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+NDILDL+ +++G ++       L+D++ +V  ++  K  E N+ +KV     + 
Sbjct: 363 HLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAIP 422

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------NGDFIFSVKNNGS 728
            +  +D  RL Q+ + ++ NA+ F+  GS  I+ +            +      + + G 
Sbjct: 423 RTIQSDPTRLRQVVTNLVGNAIKFTESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTGI 482

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  D    +F+ FV       R   G GLGLSI        GG +++ S     +T   
Sbjct: 483 GMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFRV 542

Query: 787 RIPS 790
            +P+
Sbjct: 543 ELPT 546



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 112/334 (33%), Gaps = 40/334 (11%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           TH    L  +TV + + +    + F NR   +L   + A L     +D   + +     +
Sbjct: 183 THVENALDTITVGLVLLNSKGRILFTNRRLNQLLSQESADLMGKKIDDLEWQMIADTGAV 242

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--TLHVIVTSNPRGGTIWMFENLT--- 420
              L W+  K+N  SV        +     NG+  T  V  T     G +  FE++T   
Sbjct: 243 ---LPWEEAKQNDDSVMDRILQFDN-----NGRMLTFSVNCTPIAGQGYLVTFEDITLIE 294

Query: 421 ----VQVDLETKYNTLVKVQGETIDHLSE----------GVAVFGPDGRIKLSNPAFRSL 466
                              + + + ++S           G       G +   + A   L
Sbjct: 295 ENKVALAKARDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVSNGDEAVDHL 354

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                     G H+  +            G      I TS DD    +  TL++ +D   
Sbjct: 355 NMIH----RSGAHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKAD--- 407

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E ++    + +T +     +D  R  + +T       K  E  +  V  V+  L++P   
Sbjct: 408 EQNLALKVDFRTAIPRTIQSDPTRLRQVVTNLVGNAIKFTESGS--VSIVTSLLKTPSNA 465

Query: 587 IIGFTDLLK----TSKLGSLNSKQSQYVEYISAS 616
           + G+  +++     + +G    +Q++  +    +
Sbjct: 466 LEGYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQA 499


>gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
 gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
          Length = 1121

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/572 (19%), Positives = 203/572 (35%), Gaps = 81/572 (14%)

Query: 293 IDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +D+++    E  V +      +I+  L  A  + D+   +   NR+   +  +    +  
Sbjct: 149 LDITERKEAEEAVRESKRQFQDIIDFLPDATLVIDREGKVIAWNRAIEAMTGVQAQDILG 208

Query: 349 NPSNDELLEFLRSANKLPEQLNW---KTWKENIFSVYKSSETHKDTWHLP----NGQTLH 401
             + +  L F      +     +   + ++     V +  E      ++P     G  L 
Sbjct: 209 KGNYEYALPFYGERRPILIDFVFAKEEEFRSRYAQVSRRGEILCGETYVPQLKAGGAYLI 268

Query: 402 -----VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-------- 448
                +  +S+   G I +  + T +  +E       +     ++  + G+         
Sbjct: 269 ATAGGLYDSSDHLTGAIEIIRDNTERKHMEEALYRQKEYL-AALNETTLGLINRLNLHDL 327

Query: 449 -----------VFGPDGRIKLSNPA------------FRSLWKTE----------ENRLS 475
                      +  P G I L NP             F  L                +  
Sbjct: 328 LQTLICRAGQLLGTPHGFIHLVNPERMILECRVGMGIFEKLIGACLKLGQGLSGQVWQTG 387

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               I N      R       +     I+         + G L L      + +      
Sbjct: 388 QSLLIENYQDWGGRADTPGLDYQSIRMIMGIPLKSGSQVTGVLGLACHRETDQTFSDEEK 447

Query: 536 A---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           A   +         D+ +     +E   A   A+E K++F+  +S+E+R+P+  +IG T+
Sbjct: 448 ALLERFGELASLALDNAKLYAEASEARTAAEAANEAKSTFLATMSHEIRTPMNGVIGMTN 507

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +    LN +Q ++ E I  S   LL ++NDILD + ++AG M+L +    L + L 
Sbjct: 508 LLLDT---PLNEEQREFCETIRGSGEALLTIINDILDFSKIEAGKMELEHQPFDLRECLE 564

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                I T   +  + +    D ++  +   D  RL QI   +L+NA+ F+ +G  + L 
Sbjct: 565 SALDLIVTPAQQKGLELVYHVDKQVPATIAGDVTRLRQILLNLLNNAVKFTEQGE-ISLT 623

Query: 712 AARDNGD-----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
              ++G              FSV ++G  IP D    +F  F        R   G GLGL
Sbjct: 624 VRGEDGPDAAALPPGSMLLRFSVADSGIGIPPDRLNRMFQSFSQIDASTTRKYGGTGLGL 683

Query: 759 SIVESFINLHGGHVSISSS--DEGVTTINCRI 788
           +I +    + GG + + S       +T +  I
Sbjct: 684 AISKRLSEMMGGRLWVESKGVPGKGSTFHLLI 715



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 83/246 (33%), Gaps = 38/246 (15%)

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS----NPRGG---TIWM 415
           +PE L+    ++ + +  K+ + +   + +   +G+ L +  +S    + + G       
Sbjct: 90  VPEDLDR--IQKELITALKTDKAYIREYRIRHRSGKVLWIQESSQIMCHSQSGFEFVYGA 147

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F ++T + + E       +   + ID L +   V   +G++   N A  ++   +   + 
Sbjct: 148 FLDITERKEAEEAVRESKRQFQDIIDFLPDATLVIDREGKVIAWNRAIEAMTGVQAQDIL 207

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +                   +    + + ++E +S    +    + +   + +P   
Sbjct: 208 GKGNYEYALPFYGERRP------ILIDFVFAKEEEFRSRYAQVSRRGEILCGETYVPQLK 261

Query: 536 AQT--------------------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           A                      +    + T+    E AL  + E L   +E     +  
Sbjct: 262 AGGAYLIATAGGLYDSSDHLTGAIEIIRDNTERKHMEEALYRQKEYLAALNETTLGLINR 321

Query: 576 VS-YEL 580
           ++ ++L
Sbjct: 322 LNLHDL 327


>gi|188993224|ref|YP_001905234.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734984|emb|CAP53196.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 702

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 191/514 (37%), Gaps = 52/514 (10%)

Query: 308 TYEILHNLTVAIAIFD--------QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
             EI  N+     I D         +   +  N +F     +      +          +
Sbjct: 57  YREIFDNVDAGFCIIDMVFEGNRPTDYIFRVTNEAFQRYTGLSEVANVS----------M 106

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV---IVTSNPRGGTIWMF 416
           RS     EQ  +  +          +  H +       +   V    V          +F
Sbjct: 107 RSLRADHEQEWFDRY---GHVALTGNRIHFEMQAKALNRWYSVDAFRVGPPELKRVAVLF 163

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T +  +E +            D L   V V    G ++  N A+   +  + +  + 
Sbjct: 164 MDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDISSGT- 222

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPL 533
                   +  S   +  D       +  S +++R           D     +E +  P 
Sbjct: 223 -------VSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRHDGQWRWIEMTATPR 275

Query: 534 PNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYELR 581
            +A      +  +     E R +    E L +++            +K+ F+  +S+ELR
Sbjct: 276 YSADGRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMARLKDEFLATLSHELR 335

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I+G+++LL         +   + +  I++S+     L++D+LDL+++  G ++L 
Sbjct: 336 TPLTTILGWSELLLQRVEEGHPN--YKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLE 393

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             ++ L + + E   +        +  +++         + D  RL Q+F  +LSNA+ F
Sbjct: 394 VESLDLAEQVREALGAQEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKF 453

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           +     + +    D+G FI SV+++G  I  +    +F RF        R   G+GLGL+
Sbjct: 454 TPAHGRIDVTVEHDDGHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLA 513

Query: 760 IVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
           IV+  + +HGG V  +S       T   R+P  +
Sbjct: 514 IVQQLVEMHGGQVGATSGGRGKGATFTVRLPEHQ 547



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +      ++ T  
Sbjct: 165 DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDISSGTVS 224

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +    E   +F+ E+   +     L             G  +  ++           
Sbjct: 225 AWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRH---DGQWRWIEMTATPRYSADGR 281

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G AG + DV+++  +        E
Sbjct: 282 FIGLAGSSPDVTEQREIALAREQLLE 307



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +D+++   V  +L  +      L   +     + D    ++F N ++ E + +D+    +
Sbjct: 164 MDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDI----S 219

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           + +     E L   +    Q       E    ++      +      +GQ   + +T+ P
Sbjct: 220 SGTVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRH-----DGQWRWIEMTATP 274

Query: 409 R-------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           R        G      ++T Q ++      L++ +   
Sbjct: 275 RYSADGRFIGLAGSSPDVTEQREIALAREQLLESERSA 312


>gi|332686790|ref|YP_004456564.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311]
 gi|332370799|dbj|BAK21755.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311]
          Length = 608

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 164/390 (42%), Gaps = 30/390 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL-- 466
           G     F  L+ +V+   +     +      + H+++GV      G+I   N    SL  
Sbjct: 233 GQLAETFNQLSERVEETQETMEAERNRLNSVLSHMTDGVIATDRRGKILTINEMALSLLD 292

Query: 467 WKTEENRLSPGTHIRNIAATCS-RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            KTEE   +    + +I A  + R   E+    L    +++ +DE+  ++          
Sbjct: 293 VKTEEAIGTFILTLLDIEADYNLRKLLEAPNELLIDRSVSNKNDEQLIIRA--------- 343

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            ++++I   +         + D    E           K +  +  FV +VS+ELR+PLT
Sbjct: 344 -DFTMIRRESGFITGIVCVLHDVTEQE-----------KNERERREFVSNVSHELRTPLT 391

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           ++  + + L      +       +++     +  ++ ++ND+L+L+ +D+G  +L    +
Sbjct: 392 SMHSYIEALSEGAWKN-PEVAPDFLKVTLEETDRMIRMINDLLNLSRMDSGTSELQLEYV 450

Query: 646 VLNDLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             N+L+N V       +   + N  I      +      D  +++Q+   IL+NA+ +S 
Sbjct: 451 NFNELVNFVLDRFDMMLDKEKKNYTIDREFTRRDLWLEIDTDKIIQVLDNILNNAIKYSP 510

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
            G  +  +    + + +FSV + G  IP+     VF+RF         ++ G GLGL+I 
Sbjct: 511 DGGKITCRLLETHNNAVFSVTDQGLGIPKKDIAKVFDRFYRVDKARARKQGGTGLGLAIS 570

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  I  H G + + S +   +T    +P +
Sbjct: 571 KEVIRAHNGFIWVESEEGKGSTFYISLPYE 600


>gi|144899922|emb|CAM76786.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 830

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 105/402 (26%), Positives = 181/402 (45%), Gaps = 45/402 (11%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +   +T Q   E   ++L     ++       V   G DG I  +NPA   L      
Sbjct: 440 LILVTEVTEQRRAEQMIHSLALFPAQS----PYPVLRIGIDGAILHANPASEPLLSEWAT 495

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +                       D +  IIT      + LQ  L ++   VL  +++P
Sbjct: 496 GMGRKVP------------------DEWHGIITEVLATGRQLQAELPVI-GRVLSLTLVP 536

Query: 533 LPNAQTMLTF-VNVTDSVRAERALTEKNEALRKA------------------DEIKNSFV 573
           +  A  +  +  +V+D V AER L + NE L +                      K+ F+
Sbjct: 537 VKGAGYVNIYATDVSDRVAAERQLADANEDLERRVEERTRDLVRAKEQAELASRSKSEFL 596

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLAT 632
             +S+ELR+PL  IIGF++++  S  G L NS+  +Y   I  S   LL ++NDILD++ 
Sbjct: 597 ATISHELRTPLNAIIGFSEVMAGSMFGPLGNSRYQEYAGDIVQSGRHLLAVINDILDVSK 656

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++AG M L++  + +  +++   + + T+   N++R++   D  L     DR+R LQI  
Sbjct: 657 IEAGQMSLDFGPVDIPPVIDSAVRLVETRARANSLRLRSEVDKDLPIIDGDRRRCLQILV 716

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQ 750
            +LSNA+ F+ +G  V + A+R+N      V++ G  + E   +     F  V  +   Q
Sbjct: 717 NLLSNAIKFTPEGGQVTIGASRENDGIRLKVQDTGIGMSESEIQVALEPFRQVDGSLSRQ 776

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL + +S + LHGG + ++S     T +   +P  +
Sbjct: 777 YEGTGLGLPLAKSMVELHGGSLVVNSRKGEGTEVAFWLPLNQ 818



 Score = 41.5 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 11/158 (6%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTL--KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
             G+     +LS DGI  +L   T   + ++    I    +      + V      G IL
Sbjct: 421 THGAERIYELLSADGIDHDLILVTEVTEQRRAEQMIHSLALFPAQSPYPVLRIGIDGAIL 480

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            AN +      +E ++ + A G  RK+  E     +    A  +     +  +  G   S
Sbjct: 481 HANPA------SEPLLSEWATGMGRKVPDEWHG-IITEVLATGRQLQAELPVI--GRVLS 531

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
             +V V  +      A DVS  +    QL    E L  
Sbjct: 532 LTLVPVKGAGYVNIYATDVSDRVAAERQLADANEDLER 569


>gi|75911124|ref|YP_325420.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704849|gb|ABA24525.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 889

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 153/380 (40%), Gaps = 21/380 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + +L  +   L       +  +++       D  I   N     +   E   L    + 
Sbjct: 365 EKDELLRREQALRSRLSNILSSMTDAFIAVNRDWDITYCNHQAAKIQHLEPEDLIGKNYW 424

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              A T    +       L   I   F+         L  L D   E    P  +   + 
Sbjct: 425 EQWARTKGTDFEREYRRSLAENIPVHFE--------VLYELWDMWFEVHAYPAEDGLGIF 476

Query: 541 TFVNVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            F N+T+  +AE+                 +A+ +K+ F+  +S+ELR+PL  I+G+  L
Sbjct: 477 -FRNITERKQAEQEREYLLMREQIARSEAERANRLKDDFLAVLSHELRTPLNPILGWATL 535

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK   L      + + +E I  ++ + + L+ D+LD++ +  G + LN  ++ L + + E
Sbjct: 536 LKKRNLEEAT--RRRGIETIERNAKLQIQLIEDLLDVSRIQQGKLNLNIQSVNLVNTIEE 593

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             ++++  +   NI +K   +  +     D  RL QI   +L+NA+ F+     + +   
Sbjct: 594 ALETVSLAIEAKNIDVKTALNVNVCMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVALE 653

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
           R N      +++NG  I  +    VF  F        R   G+GLGL+IV+    LHGG 
Sbjct: 654 RVNNSAQIQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGT 713

Query: 772 VSISSSDEG-VTTINCRIPS 790
           V   S+ EG   T    +P 
Sbjct: 714 VKAESAGEGMGATFTVNLPL 733



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 14/143 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  +  +L++   IL ++T A    +++  + + N    ++  ++   L      ++  
Sbjct: 372 REQALRSRLSN---ILSSMTDAFIAVNRDWDITYCNHQAAKIQHLEPEDLIGKNYWEQW- 427

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
              R+     E+   ++  ENI   ++      D W         V       G  I+ F
Sbjct: 428 --ARTKGTDFEREYRRSLAENIPVHFEVLYELWDMW-------FEVHAYPAEDGLGIF-F 477

Query: 417 ENLTVQVDLETKYNTLVKVQGET 439
            N+T +   E +   L+  +   
Sbjct: 478 RNITERKQAEQEREYLLMREQIA 500


>gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
 gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
          Length = 1334

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 122/657 (18%), Positives = 234/657 (35%), Gaps = 69/657 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
              +  + ++  +    ++  +    V   D   +I+W N  +++ T   G    +A+G+
Sbjct: 177 RAEMLARNMTADLERLALVAKNTSNAVVITDVNREIVWVNEGFERIT---GYSQDEALGK 233

Query: 240 SRKLF------KEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIV------RVLNSF 286
           S             +K  M ++    + F  E V+  + G     ++             
Sbjct: 234 SPGKLLQCSSTDHSVKTAMKTALDAGEPFKGEIVNRSKSGQEYWIELEIQPRYNDQNEPI 293

Query: 287 GEAGIAIDVSKEITVNDQL-------THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           G   I  D+S+      +L             L NL   I+  D    +   N +F  + 
Sbjct: 294 GFMAIESDISERKATYQRLEAALRENNALLSTL-NLHGIISTADSAGLITDVNDAFCNIS 352

Query: 340 EIDLAFLATNPS---NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
                 L        +    +     +      N  +W+  I +  K             
Sbjct: 353 GYSREELVGQTYRLIDSHTHDAAFWQSMWHNIANGISWRGEICNKAKG------------ 400

Query: 397 GQTLHVIVTSNPRGGTIWMFE-------NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           G+   V  T  P   +    E       ++T     +              D    G+  
Sbjct: 401 GRLYWVDTTIAPFKNSTGQIERYISIQIDITANKIQQANLIIAKNQLVRAADVAELGIWT 460

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           +         +     +++  E   +         A      +  D   +  A+ T+ D+
Sbjct: 461 WNIQEGTFSFDDRMNDIYELPEEMRNTPLP----QAYWYSLVHPDDRPIVNNAVKTALDN 516

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEAL 562
                Q    ++   V                    M    ++T    AE  L    +A 
Sbjct: 517 GGIYRQIFRIIVHGQVRYIQSTGTVERDEYGNAVLMMGINRDITQQREAENILQSARQAA 576

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A++ K++F+ ++S+ELR+P+  I+G   LL+ +    LN+KQ+ Y     A++  LL 
Sbjct: 577 EEANKAKSAFLANMSHELRTPMNAILGMLTLLRKT---GLNNKQADYAVKSEAATRTLLR 633

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           L+NDILD + ++AG M L      ++ +L ++   +++ +    + +    D  L  FV 
Sbjct: 634 LLNDILDFSKIEAGKMVLECIPFDIHVMLRDLAVILSSNLKIKKVEVLFDIDPTLPQFVE 693

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKS 737
            D  RL QI + +  NA+ F+ +G  V+ +K  + +       F V++ G  I  +  +S
Sbjct: 694 GDSMRLQQILTNLGGNALKFTEQGEVVLFIKVLKQDSQQVTLHFGVRDTGIGIAPEHQES 753

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT--TINCRIPS 790
           +F  F        RR  G GLGL I + F+ L GG + + S     +       +P 
Sbjct: 754 IFGGFTQAEASTTRRFGGTGLGLVISQRFVALMGGRLELESQPGQGSLFHFTITLPL 810


>gi|91772450|ref|YP_565142.1| PAS sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711465|gb|ABE51392.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 436

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 174/387 (44%), Gaps = 20/387 (5%)

Query: 422 QVDLETKYNTLVKVQGETI----------DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           Q++LE +   L   Q E +          + +  G  +   +  I   N  F  +   +E
Sbjct: 45  QIELEIQNEELKTSQIELLAQKEAYFTLFNKIPVGYVLLDVNASIIRMNETFSKMI-FKE 103

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFA-----AIITSFDDERKSLQGTLE-LLSDSV 525
                   + +      +    S     F       +   F+     +   L   + DSV
Sbjct: 104 IDKVLFKGLSDFIYDLDKQIFLSRYRAFFENPTNKKMEIRFNKNVGLIYCELTGRIEDSV 163

Query: 526 -LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            L  S+    +   +L   +++D   AE +L +  + L  A  IK++F+ +VS+ELR+PL
Sbjct: 164 ALTSSLNLNSSKLLLLAITDISDRKMAEISLLKSKDILENASRIKSNFIGNVSHELRTPL 223

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +IIGF+ +LK +   +L   Q +Y   +  S   LL L+ND+LD++ +++G  +     
Sbjct: 224 NSIIGFSHILKENNENNLTENQLKYCSNVEISGKHLLALINDVLDISKIESGEARFEPEL 283

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             LN L++EV +S+A   ++ +I +++    K     ADR ++ QI   +L+N++ F+  
Sbjct: 284 FKLNLLIHEVVESLAPFANKKSIELEMTLKHKNIGVHADRTKIKQILLNLLNNSIKFTPA 343

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
              ++L    D  +   S+ +NG  I +     +F  F         Q  G GLGLSI +
Sbjct: 344 CGKIMLTVGVDEENINISISDNGIGIAKYNYDRIFEPFNQADMLLTKQYEGTGLGLSIAK 403

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
            ++ +H G + + S     TT N +IP
Sbjct: 404 KYVEMHKGQIWVKSELGVGTTFNIKIP 430


>gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1788

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 164/385 (42%), Gaps = 12/385 (3%)

Query: 417  ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
              L+ +++   +    +      ++     V +   +GR++  NP F       E+ +  
Sbjct: 786  RRLSQEIEQRKRVEEELSKLYRAVEQTPVSVVITDLEGRVEYVNPTFCHNSGFAEDEVLG 845

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             T+    +   S    ++    + A    S +   ++  G L     S+           
Sbjct: 846  RTNGLIPSDHTSGAEYQALWQQITAGGEWSGEFLNRTKSGGLVWERVSISAVRSADGQIT 905

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              +    +++     +  L    E+   A+  K+SF+ ++S+E+R+P+  I+G   L + 
Sbjct: 906  HYLGIKEDISQMKEDQERLAHAKESADLANRAKSSFLANMSHEIRTPINAIVGMCHLAQR 965

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                ++  K   Y+ +I  ++  LL ++NDILD++ ++AG +        L++L++ V +
Sbjct: 966  M---TVEPKLRDYLGHIQVAADTLLGIINDILDVSKIEAGKLHFEDIPFKLDELISRVMR 1022

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---- 711
                K  + N+ + +  + ++  + V D  R+ QI + +++NA+ F+ +G  V+      
Sbjct: 1023 LQGLKAQDKNVELVIDLEPQVPQTVVGDPLRISQILTNLVNNAVKFTEQGEVVLSVKLQG 1082

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
                     F V+++G  + +   + +F  F         +  G GLGLSI ++ + + G
Sbjct: 1083 VFDGRVTLYFEVRDSGIGMEDAQLQRLFTPFQQGDDSMTRRYGGTGLGLSICQNLVKMMG 1142

Query: 770  GHVSISSSDEGVTT--INCRIPSKE 792
            GH+ + S     +       +P  +
Sbjct: 1143 GHLQVESRLSEGSRFYFTVSLPIHQ 1167


>gi|189465571|ref|ZP_03014356.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
 gi|189437845|gb|EDV06830.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
          Length = 1039

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 140/244 (57%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ LT   E   +++ +K++F+ ++S+E+R+PL  I+GF+ +L +++      ++ 
Sbjct: 657 RKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTE---EEQEKQ 713

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV  I  ++T+LL L++DILDL+ ++AG ++LNYS I LN+L+ E+++    ++  + +
Sbjct: 714 EYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKTDAV 773

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +          ++ RL Q+   +++NA+ F+ KGS +         +  F V + G
Sbjct: 774 KLEFVEPAGPCMVYTEKNRLSQLMINLVTNAIKFTEKGS-IRFGYEMRENELYFYVADTG 832

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IP+D  +++F RFV      Q  G GLGLSI ++ I   GG + + S +   +T    
Sbjct: 833 CGIPKDKQQNIFGRFVKLNSFAQ--GTGLGLSICQTLIERMGGRIGVESEEGKGSTFWFT 890

Query: 788 IPSK 791
           +P K
Sbjct: 891 LPYK 894


>gi|159045886|ref|YP_001534680.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
 gi|157913646|gb|ABV95079.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
          Length = 781

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 161/385 (41%), Gaps = 26/385 (6%)

Query: 422 QVDLETKYNTLVKVQGET------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           Q  L+  Y TL   + E         + ++ V V    G I+  N +F  +         
Sbjct: 235 QERLDRSYQTLRAREREARHLAMVAANANDSVIVTDRAGHIEYVNASFTRVTGYTVEEAL 294

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                R  A   +    +++  +       + +  R  L    +   D  +E +I P+ +
Sbjct: 295 G----RTPAELLNGPNTDTEAIEAILNARRTHEPVRLELINRTKFGKDIWVETNITPMMD 350

Query: 536 A-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +       +    ++T + + E+ L     A  +    K  F+  +S+E+R+PL  IIG 
Sbjct: 351 SDGNVVGEVAIERDITQAKQREQELAAAKTAAEEGARAKAQFLAMISHEIRTPLNGIIGM 410

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +D++ +   G L+ +    ++ I AS   LL ++NDILDL+ ++AG M+++     L   
Sbjct: 411 SDVMLS---GPLDPEHRGNLQTILASGEGLLTIINDILDLSKLEAGKMEIDQLPFDLRAE 467

Query: 651 LNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L      +    +E  + + V   G   G  + D  R+ Q+F  ++ NA+ F+  G+ V 
Sbjct: 468 LQAALDLVRPLANEKGLSLSVDVSGLPEGRILGDPGRVRQVFLNLMGNAIKFTRAGA-VS 526

Query: 710 LKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
           L+AA D G        +V++ G  IP D    +F+ F        R   G GLGL+I   
Sbjct: 527 LRAAVDTGAAPPRVTLAVQDTGIGIPADRLDQIFDAFAQADSATTRDFGGTGLGLAISRQ 586

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
                GG ++++S     +      
Sbjct: 587 LTQQMGGDITVTSVPGKGSCFTMEF 611


>gi|29375769|ref|NP_814923.1| sensory box histidine kinase VicK [Enterococcus faecalis V583]
 gi|227552978|ref|ZP_03983027.1| histidine kinase [Enterococcus faecalis HH22]
 gi|257419020|ref|ZP_05596014.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis T11]
 gi|29343230|gb|AAO80993.1| sensory box histidine kinase VicK [Enterococcus faecalis V583]
 gi|227177887|gb|EEI58859.1| histidine kinase [Enterococcus faecalis HH22]
 gi|257160848|gb|EEU90808.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis T11]
 gi|315575747|gb|EFU87938.1| PAS domain S-box [Enterococcus faecalis TX0309B]
 gi|315579809|gb|EFU92000.1| PAS domain S-box [Enterococcus faecalis TX0309A]
          Length = 609

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 156/387 (40%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L+ +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 234 GQLAETFNQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLN 293

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   +  GT +  +      Y       +    +I     +R+  Q  +       +++
Sbjct: 294 VKNENV-IGTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIR------VDF 346

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           ++I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 347 TMIRRESGFITGLVCVLHDVTEQE-----------KNERERREFVSNVSHELRTPLTSMR 395

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L      +       +++     +  ++ ++ND+L+L+ +D+G   L    +  N
Sbjct: 396 SYIEALSEGAWEN-PEIAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFN 454

Query: 649 DLLNEVKQSIATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   + N +I      +      D  +++Q+   IL+NA+ +S  G 
Sbjct: 455 ELINFVLDRFDMMIENEQKNYKICREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGG 514

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            +  +    + + +FS+ + G  IP+     VF RF        R   G GLGL+I +  
Sbjct: 515 VITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEV 574

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G + + S++   +T    +P +
Sbjct: 575 IRAHNGSIWVESTEGEGSTFYISLPYE 601


>gi|307268694|ref|ZP_07550063.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|306515006|gb|EFM83552.1| PAS domain S-box [Enterococcus faecalis TX4248]
          Length = 609

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 157/387 (40%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L+ +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 234 GQLAETFNQLSERIEEAQETMEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLN 293

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   +  GT +  +      Y       +    +I     +R+  Q  +       +++
Sbjct: 294 VKNENV-IGTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIR------VDF 346

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           ++I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 347 TMIRRESGFITGLVCVLHDVTEQE-----------KNERERREFVSNVSHELRTPLTSMR 395

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L      +       +++     +  ++ ++ND+L+L+ +D+G   L    +  N
Sbjct: 396 SYIEALSEGAWEN-PEIAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFN 454

Query: 649 DLLNEVKQSIATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   + N +I+     +      D  +++Q+   IL+NA+ +S  G 
Sbjct: 455 ELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGG 514

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            +  +    + + +FS+ + G  IP+     VF RF        R   G GLGL+I +  
Sbjct: 515 VITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEV 574

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G + + S++   +T    +P +
Sbjct: 575 IRAHNGSIWVESTEGEGSTFYISLPYE 601


>gi|16124905|ref|NP_419469.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221233626|ref|YP_002516062.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13421867|gb|AAK22637.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220962798|gb|ACL94154.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 776

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 113/653 (17%), Positives = 230/653 (35%), Gaps = 68/653 (10%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
                 L    + F++L +    ++     +G   + + + ++     G   ++ +    
Sbjct: 6   PQDIDALRASEAFFRLLTEQAGDVISRHRLSGTDHYVSPAVERMM---GWTAEEMLEAGF 62

Query: 242 KLFKEEIKKRM------ISSSALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGE----A 289
           K F                 + +E          + G     +  +  V +  G      
Sbjct: 63  KAFYHPDDTPAVYDVYNRMRAGVEHCSVRYRGRRKDGRYVWLESHLTLVRDEAGAPSELI 122

Query: 290 GIAIDVSKEITVNDQLTHTYEILHN------LTVAIAIF-----DQNRYLQFHNRSFVEL 338
            +  D+ + + + D+  HT E +        L   +A       D      + +  F EL
Sbjct: 123 AVTRDIDERVQLEDEARHTREAMRETQQRAMLAEQVAQVAFWRVDLITNEVYLSPRFREL 182

Query: 339 WEIDLAFLATNP-SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW---HL 394
           +     +    P S  E+L             +    +  +    ++ E  ++       
Sbjct: 183 YG----WTQDEPISLGEVLSRFH-------PEDRPVARARVAEHLRTGEPSRNRMDRIIR 231

Query: 395 PNGQTLHVIV----------TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +G   H++                 GT     ++T  V  +           +      
Sbjct: 232 LDGAVRHIVGSFEFDFDDNGRPIAMSGTTV---DVTDLVAAQQSLAKTESRFQDLAKATR 288

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           + V      G I   + A   +    E     G  +   AA  +   +       F A++
Sbjct: 289 DIVIEVDRRGNILFVSAAVEPVLGYAE-----GELLGRKAAKLTHPNDLPGLVQAFGAVL 343

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPN---AQTMLTFVNVTDSVRAERALTEKNEA 561
              +     L+          +     P+ N    +      ++T+  RA   L  +   
Sbjct: 344 ADPEGLPPVLEARALHKDGHWVWLQGRPVLNRTAGRIEGVIQDITEYKRARDELAAEQAR 403

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A E +++F+ ++S+ELR+PLT +IGF  L++   L  L      YV  IS +   LL
Sbjct: 404 AEQALEARSAFLANMSHELRTPLTAVIGFAALVE--GLDDLPETARDYVGRISTAGKALL 461

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
           +++ND+L+++ ++ G ++ + +   L  L+++  +       E N++I V + D      
Sbjct: 462 SVINDVLEMSKLETGQVQAHLAPCALAPLIDDTVRMFGLHAAEKNLQIAVRMVDPPPRVL 521

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVF 739
           + D  R+ Q+   ++ NA+ ++  GS  +    R    +   +VK+ G  I       +F
Sbjct: 522 MIDPDRVRQVLINLIGNAIRYTDAGSITLEVIWRGELEELFVAVKDTGIGIDPADQAHLF 581

Query: 740 NRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF    +A    R G GLGL I +  +   GG +  SS     +T    IP+
Sbjct: 582 KRFSQIESARARSRGGSGLGLVISKGLVEAMGGRIGASSKPGEGSTFWFAIPA 634


>gi|315029161|gb|EFT41093.1| PAS domain S-box [Enterococcus faecalis TX4000]
          Length = 609

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 157/387 (40%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L+ +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 234 GQLAETFNQLSERIEEAQETMEAERNHLDSVLTHMTDGVIATDRRGKVITINEMALSLLN 293

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   +  GT +  +      Y       +    +I     +R+  Q  +       +++
Sbjct: 294 VKNENV-IGTSLLELLDIEEDYTLRKLLEEPDELLIDRSTSDREEDQMIIR------VDF 346

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           ++I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 347 TMIRRESGFITGLVCVLHDVTEQE-----------KNERERREFVSNVSHELRTPLTSMR 395

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L      +       +++     +  ++ ++ND+L+L+ +D+G   L    +  N
Sbjct: 396 SYIEALSEGAWEN-PEIAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFN 454

Query: 649 DLLNEVKQSIATKMH--ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   + N +I+     +      D  +++Q+   IL+NA+ +S  G 
Sbjct: 455 ELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGG 514

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            +  +    + + +FS+ + G  IP+     VF RF        R   G GLGL+I +  
Sbjct: 515 VITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEV 574

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G + + S++   +T    +P +
Sbjct: 575 IRAHNGSIWVESTEGEGSTFYISLPYE 601


>gi|222099707|ref|YP_002534275.1| Sensor protein [Thermotoga neapolitana DSM 4359]
 gi|221572097|gb|ACM22909.1| Sensor protein [Thermotoga neapolitana DSM 4359]
          Length = 412

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 174/391 (44%), Gaps = 39/391 (9%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +++FE L   +D        V+V  +     ++ LSE + +   +G I   N A R L +
Sbjct: 46  LYLFERLKKYIDNLKDRIARVEVSRDNFLTILNSLSEPIFILDREGNITFLNEAARRLVQ 105

Query: 469 TEENRLSPGTHIRNIAATCSRYYN---ESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                         I+    RYY    +    ++    I S + +  +L   +E      
Sbjct: 106 ------------DRISPEGRRYYEIFEDYYINEMVEETIKSLEPQEGTLVTYIE-NDKKY 152

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
               +IP+        FV +   V  ER L          DE++  F+  VS+ELR+PLT
Sbjct: 153 FHVKVIPVDLKSGDKIFVILFHDVTKERKL----------DEMRREFIATVSHELRTPLT 202

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I G+ + L    L +      ++++ I   S  + +L+ND+LDL  ++   ++     +
Sbjct: 203 SIHGYAETLLEDDLEN-KELVKRFLKIIEEESARMTHLINDLLDLEKMEESSVEFEMKEL 261

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS--- 702
            L ++++ V + +     EN + +++  +    +   +++RL+Q+   ++ NA+ ++   
Sbjct: 262 DLCEVVDYVYRIVQPIAEENEVELEIDCEN--VTVKGNKERLIQMLLNLVDNAVKYTSLK 319

Query: 703 SKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
            KG   V ++A       +  V++ G  IP++    +F +F  V  A   +  G GLGL+
Sbjct: 320 EKGEKKVWVRAYDTPDWAVIEVEDTGPGIPKEAQSRIFEKFFRVDKARSRKMGGTGLGLT 379

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           IV++ ++ HGG + + S     T +   +P 
Sbjct: 380 IVKTIVDRHGGKIEVESEVGQGTLMRVYLPK 410



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 52/140 (37%), Gaps = 9/140 (6%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              +  ++      F  + +SL   ++  D+ G+I + N + ++  +       +     
Sbjct: 59  LKDRIARVEVSRDNFLTILNSLSEPIFILDREGNITFLNEAARRLVQDRISPEGR---RY 115

Query: 241 RKLFKEEIKKRMISSSALE-KNFCETVSTLEHGNNKSYKIVRVLNSF--GEAGIAI---D 294
            ++F++     M+  +    +    T+ T    + K + +  +      G+    I   D
Sbjct: 116 YEIFEDYYINEMVEETIKSLEPQEGTLVTYIENDKKYFHVKVIPVDLKSGDKIFVILFHD 175

Query: 295 VSKEITVNDQLTHTYEILHN 314
           V+KE  +++        + +
Sbjct: 176 VTKERKLDEMRREFIATVSH 195



 Score = 42.2 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 24/147 (16%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +   V     +   IL++L+  I I D+   + F N +   L                + 
Sbjct: 62  RIARVEVSRDNFLTILNSLSEPIFILDREGNITFLNEAARRL----------------VQ 105

Query: 357 EFL-RSANKLPEQLNWKTWKENIFSVYKSSETHK---DTWHLPNGQTLHVIVTS----NP 408
           + +     +  E        E +    KS E  +    T+   + +  HV V      + 
Sbjct: 106 DRISPEGRRYYEIFEDYYINEMVEETIKSLEPQEGTLVTYIENDKKYFHVKVIPVDLKSG 165

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKV 435
               + +F ++T +  L+      +  
Sbjct: 166 DKIFVILFHDVTKERKLDEMRREFIAT 192


>gi|299147742|ref|ZP_07040805.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513925|gb|EFI37811.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 570

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 163/375 (43%), Gaps = 16/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +ET      +   + +D+++  + V   D  ++  +N  FR              
Sbjct: 202 TKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPENAECWR 261

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +        ++  +    D                      ++        + +     
Sbjct: 262 MLNAGLENGCKHCPKPKLLDANRKFT------GVHFWEDYNPVTKRWYTIQSMAIKWLDG 315

Query: 539 MLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 316 RWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL 375

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L   +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV
Sbjct: 376 AETDEAEL---RHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREV 432

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + + K  +  + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +  +  
Sbjct: 433 IATFSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLE 492

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D     F V + G  IP++    +FNRFV      Q  G GLGLSI +S +N  GG + +
Sbjct: 493 DESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVNRMGGKIGV 550

Query: 775 SSSDEGVTTINCRIP 789
            S +   +      P
Sbjct: 551 ESREGEGSCFWFTHP 565


>gi|239826363|ref|YP_002948987.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
 gi|239806656|gb|ACS23721.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
          Length = 744

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 122/641 (19%), Positives = 248/641 (38%), Gaps = 59/641 (9%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             L  +    A   L+ +++ +   +FK +F+     +   D+ G  +  N ++     +
Sbjct: 130 FDLVIMRDISAHKALERERIIHEF-LFKDVFNRAVDSIVIFDEFGRFIDVNPAF---CMS 185

Query: 229 EGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
             +  +K +  S + F      ++  + +           E       G  K +++    
Sbjct: 186 LNLEKEKLLKLSFQQFISKECADDFVRLLAELKEKGTAKGELSLVRFDGTVKMFELTTTS 245

Query: 284 NSFGEAGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           N +    +AI  DV++   +  +L  + E    I      AI I+D   ++   N +   
Sbjct: 246 NVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQAHEAILIWDDQGHILNANHAASR 305

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD--TWHLP 395
            +E+ L  L        LL+FL   ++           + +F+ ++     +D  T+H+P
Sbjct: 306 TFELPLNLLVRK----NLLDFLDHDDE---------KVQRVFAEFRIKGEIRDELTFHMP 352

Query: 396 NGQTLHVIVT---SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           NGQ   +  T       G  + +F N+T +  +E +     +      DH   G+ ++G 
Sbjct: 353 NGQDKQLEFTMKQGAIDGYHLTIFRNVTERRKMERELRESEQKFRSIFDHSMNGILLWGE 412

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE-SDGWDLFAAIITSFDDER 511
              I   NP    +++  + +L        I     +++ + +   D         D   
Sbjct: 413 GYHILDVNPIACEIFQATKEQLLHRPITAFIPEKARKHFYKLAQQCDRLGEAYAEMDFSN 472

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
              Q  +E      L+  IIP      M+   ++T+    E  L + +            
Sbjct: 473 GGKQKIVEFS----LKKEIIP---GVGMIMLRDITERKEMELQLRKSDTLNVVG-----E 520

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
               +++E+R+P+T + GF  LL+    GS+    S Y   I +    + +++ + L LA
Sbjct: 521 LAAGIAHEIRNPMTALKGFIQLLQ----GSIKEDYSMYFNVIMSELKRIESIITEFLVLA 576

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
              A    + +    +  ++ +    I+ +   +N++I       +     +  +L Q+F
Sbjct: 577 KPQA----IQFQQNDVCKIMQDTIDLISAQATMHNVQIVADFAPHVPFIYCEPNQLKQVF 632

Query: 692 SKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
             IL NA++   KG  V ++  R D+     S+ + G  IP+D  K +   F       +
Sbjct: 633 INILKNAIEVMPKGGEVTVRINRLDDSHIRISITDQGCGIPQDKIKKLGQPFY----TTK 688

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RG GLGL +    I  H G + + S  +  TT +  +P +
Sbjct: 689 ERGTGLGLMVSYKIIEEHQGKIDVESEVDVGTTFHITLPIE 729



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 117/353 (33%), Gaps = 39/353 (11%)

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQSF-DLVAETQNDCA----IKIEGRVSGS--CAF 165
           LSF+ ++         +   +L+++G +  +L     +       +     V      A 
Sbjct: 196 LSFQQFISKECADDFVRLLAELKEKGTAKGELSLVRFDGTVKMFELTTTSNVYSGFYMAI 255

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           +R         ++ E      KL      F+ +F+     +   D  G IL AN +  + 
Sbjct: 256 MR---------DVTERKNMEIKLQKSEERFRAIFEQAHEAILIWDDQGHILNANHAASRT 306

Query: 226 TETE-GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV--RV 282
            E    ++ +K + +      E++++         +   E    + +G +K  +    + 
Sbjct: 307 FELPLNLLVRKNLLDFLDHDDEKVQRVFAEFRIKGEIRDELTFHMPNGQDKQLEFTMKQG 366

Query: 283 LNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
                   I  +V++    E  + +       I  +    I ++ +  ++   N    E+
Sbjct: 367 AIDGYHLTIFRNVTERRKMERELRESEQKFRSIFDHSMNGILLWGEGYHILDVNPIACEI 426

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           ++     L   P    + E  R           K + +      +  E + +      G+
Sbjct: 427 FQATKEQLLHRPITAFIPEKAR-----------KHFYKLAQQCDRLGEAYAEMDFSNGGK 475

Query: 399 TLHVIVTSNPR---GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
              V  +       G  + M  ++T + ++E +      +    +  L+ G+A
Sbjct: 476 QKIVEFSLKKEIIPGVGMIMLRDITERKEMELQLRKSDTL--NVVGELAAGIA 526



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/389 (14%), Positives = 131/389 (33%), Gaps = 60/389 (15%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   + ++L     I      AI IF++N      N +  +L+E++   L         
Sbjct: 22  EENRRLKERLNGYSIIFERSLDAIVIFNKNGEFVDVNEAACQLFEMEKYELIGK-KMTMF 80

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT--- 412
           L+ +          +   +++++   +  S + +    L NG+  H+  +          
Sbjct: 81  LDLV--------PPDILMFQQSMLHKF-GSFSDELLIKLRNGKVKHIEFSMKKDAFNEFD 131

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +  +++    LE +      +  +  +   + + +F   GR    NPAF      E+ 
Sbjct: 132 LVIMRDISAHKALERERIIHEFLFKDVFNRAVDSIVIFDEFGRFIDVNPAFCMSLNLEKE 191

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEY--- 528
           +L   +  + I+  C+         D F  ++     E+ + +G L L+  D  ++    
Sbjct: 192 KLLKLSFQQFISKECA---------DDFVRLLAEL-KEKGTAKGELSLVRFDGTVKMFEL 241

Query: 529 -SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +   + +   M    +VT+    E  L +  E  R   E         ++E       I
Sbjct: 242 TTTSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQ--------AHE------AI 287

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTI----LLNLV-NDILDLATVDAGIMKLNY 642
           +             +   Q   +    A+S      L  LV  ++LD    D   ++  +
Sbjct: 288 L-------------IWDDQGHILNANHAASRTFELPLNLLVRKNLLDFLDHDDEKVQRVF 334

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKV 671
           +   +   + +          +  +   +
Sbjct: 335 AEFRIKGEIRDELTFHMPNGQDKQLEFTM 363


>gi|329851989|ref|ZP_08266670.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328839838|gb|EGF89411.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 1042

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 120/691 (17%), Positives = 245/691 (35%), Gaps = 89/691 (12%)

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           F LV  T     +   G +       R +S      E      +  +       F  +  
Sbjct: 252 FRLVLTT-AGTML---GLIILGVVSARRMSESENRLESERLRAQASEAQ-----FHSVIA 302

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           +    +   D+ G +   N    +     G    + +G   ++    I +R   +     
Sbjct: 303 NAHQAIVTTDEHGRVASWN---GQAEAVFGWSETEVVGR--RMSDMIIPERFRDAHTKGM 357

Query: 261 -NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI----------------DVSKEITVND 303
             F ET      G       +    +     +A+                DV++ +    
Sbjct: 358 ARFMETGEARVIGQRIELPALNRSGTEFTIELALSAARNSAGWQFTAMMHDVTERLA--- 414

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           Q        H+  + +A+   +      N +F  L +++   L                 
Sbjct: 415 QTQLFEAAFHHAPIGVALVGLDGGFLKVNLAFCRLVDLEREDLLA-----------ADFQ 463

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHV--------IVTSNPRGGT 412
           K+    +     E +  + +           +  PNG+ + V          T  P+   
Sbjct: 464 KITHPDDLDRDLELLAELTRGDIPSYQMDKRYLRPNGEVVWVNLSVSMVREETGAPK-HY 522

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE- 471
           I   +NLT +++ E +Y  +        ++ ++ +     + R    + A R L      
Sbjct: 523 IAQVQNLTERMEAEARYQLMA-------ENTTDLIVTCDLNLRRSFVSAAVRRLQGISPA 575

Query: 472 ----NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                R     H  ++A+  + +   ++G          ++ E             + +E
Sbjct: 576 EALACRPEDYMHEEDVASVVATFRRTAEGETGLRVRWRCWNQEAHIW---------TWVE 626

Query: 528 YSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            S   + N        +    +++  V  E+ L    +A   A   K  F+ ++S+E+R+
Sbjct: 627 SSPSLIRNGDDTAPMFVDVVRDISSQVTQEQKLEAATDAAEAAAAAKADFMANMSHEIRT 686

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT +IGF+ LL  ++   +     +Y + I+ +S  LL+LVNDILD + ++AG ++L  
Sbjct: 687 PLTVMIGFSSLL--TERQDMPDDALRYAQRIATASNSLLSLVNDILDFSKLEAGQLELKP 744

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
               + ++  E+   +  +     + ++   D  +  +   D Q   Q+   ++ NA+ F
Sbjct: 745 KPTEIVEMSRELFLMMQAQAAAKGLNLRFEDDNSVPDTVFLDPQAYRQVLLNLVGNAIKF 804

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           +  GS V L    DN      V + G  + E     +F RF  V  +   +  G GLGL+
Sbjct: 805 TDTGS-VTLMLGYDNKHLTVRVIDTGPGMNEAGQAKLFQRFSQVDGSSTRKHGGTGLGLA 863

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           I    +   GG + ++S+    +  +  +P+
Sbjct: 864 ICRGLVEAMGGTIGVTSAPGEGSHFHFTLPA 894


>gi|254504175|ref|ZP_05116326.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
 gi|222440246|gb|EEE46925.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
          Length = 827

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 160/393 (40%), Gaps = 45/393 (11%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +  + +GVAVF  D ++   N  FR +    +  +  G  +  +    + +    
Sbjct: 8   LLESVLSSMIQGVAVFDEDLKLLAWNQKFRDMRHYPDELVFEGQSVEALIRFDAEHGEFG 67

Query: 495 DGWDLFAAIITSFDDERKSLQG---TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            G      I+     + +  +           S +E    PLP    + T+ ++T+ V A
Sbjct: 68  PGD--VDEIVRGLMQKVRYFEEHAFERARPDGSYMEVKGGPLPGGGFVSTYSDITERVAA 125

Query: 552 ERALTEKNEALRKADEI----------------------------KNSFVQHVSYELRSP 583
              L  + E L++A +                             K+ F+  +S+E+R+P
Sbjct: 126 RHQLLRQMEELKEARQATLDMMEKAEANRKRAEELREKAESATKAKDMFLAAMSHEIRTP 185

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  ++G  DLL  +    L+ +Q Q    +  S+  LL ++NDILD + ++AG M L   
Sbjct: 186 MNGVVGMIDLLTHT---DLDDEQMQMAATVRDSAFALLTIINDILDFSKIEAGKMDLEMI 242

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
            + + D++  V +++        +      D ++      D+ RL QI   +L NA+ F+
Sbjct: 243 PMSILDVVEGVGETMGPNACAKVLDFIAYCDPRIPAEVAGDQVRLRQILFNLLGNAVKFT 302

Query: 703 SKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
             G  V L+      +       + V+++G  +  +   ++F  F        RR  G G
Sbjct: 303 EAG-QVTLRVDMNEISEGQATVRYQVQDHGIGMTPEQTANLFQPFQQADVSTTRRFGGTG 361

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+IV   +++ GG + + S     +T    +
Sbjct: 362 LGLTIVRRLVDMMGGTIDVESVPGDGSTFTVTL 394



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 10/229 (4%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +L ++   +A+FD++  L   N+ F ++       +    S + L+ F     +   
Sbjct: 9   LESVLSSMIQGVAVFDEDLKLLAWNQKFRDMRHYPDELVFEGQSVEALIRFDAEHGEFG- 67

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE- 426
             +       +    +  E H      P+G  + V     P GG +  + ++T +V    
Sbjct: 68  PGDVDEIVRGLMQKVRYFEEHAFERARPDGSYMEVKGGPLPGGGFVSTYSDITERVAARH 127

Query: 427 ---TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRN 482
               +   L + +  T+D + +  A      R +       S  K ++  L+  +H IR 
Sbjct: 128 QLLRQMEELKEARQATLDMMEKAEA---NRKRAEELREKAESATKAKDMFLAAMSHEIRT 184

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                    +     DL    +      R S    L +++D +L++S I
Sbjct: 185 PMNGVVGMIDLLTHTDLDDEQMQMAATVRDSAFALLTIIND-ILDFSKI 232


>gi|114563673|ref|YP_751186.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114334966|gb|ABI72348.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 1132

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 204/496 (41%), Gaps = 21/496 (4%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 +      I  F+    ++  N++   L      +   +  +  + +F+ S    
Sbjct: 295 ARYRATISTAVDGIITFNAKGRIESGNQAVELLLG----WRLEDVCHQNIRDFIPSPFID 350

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---SNPRGGTIWM--FENLT 420
                  ++  NI    KS+    +  H+ NG T+ V V+   +   G ++++    +L 
Sbjct: 351 EFNARLDSFSNNIGQQ-KSTGRDVEALHV-NGTTIPVRVSIGHACIEGKSLFVMYISDLR 408

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVA---VFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
            +++++             I ++  G+A   +   +  +   + A  ++     +     
Sbjct: 409 HRIEMQRALIKSEAQFRSLITNIP-GIAYRCLNVENWPMVFISDAVENITGYPASDYIGA 467

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T  R+          E  G  +    +   +    +  G +  L         I + +  
Sbjct: 468 TPKRHFYQHVHPDDLEQIGNQVVTDQVFKLEYRIYNANGDIRWLLGYGAHVDGIDVQDKW 527

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                +++TD    E++L    +   +A   +++F+ ++S+E+R+P+  IIGF+D+L   
Sbjct: 528 LDGFIMDITDRKEMEQSLLIAKDKAEQAASARSAFLANMSHEIRTPMNAIIGFSDILLD- 586

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL ++Q +++  I+ S+  LL+L+ND+LD A +D G   L      + + ++ V  +
Sbjct: 587 --DSLPAEQQKHLRTINQSAKSLLHLLNDVLDSAKLDKGKFDLELRDFSVIEEIDSVVST 644

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +  +     + + V     +  S+     R+ Q+ + ++ NA+ F+++G   I  + + +
Sbjct: 645 LWLQASSKGLFLNVNVSADVAISYHGAPDRIRQVLTNLIGNAIKFTAEGGVSIDVSVKPS 704

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           G   F++ + G  +  +    VF+ F        RR  G GLG +I +  + L GG ++ 
Sbjct: 705 GCIEFAINDTGIGMTPEQLALVFDAFAQADASMNRRFGGTGLGTTISKQLVELMGGKITA 764

Query: 775 SSSDEGVTTINCRIPS 790
            S+    +     +P 
Sbjct: 765 KSTFGQGSCFGFTLPL 780



 Score = 38.0 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 51/159 (32%), Gaps = 17/159 (10%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                 TI    +G+  F   GRI+  N A   L             + ++     R + 
Sbjct: 294 EARYRATISTAVDGIITFNAKGRIESGNQAVELLLGW---------RLEDVCHQNIRDFI 344

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            S   D F A + SF +     + T   +    +  + IP+  +         +  V   
Sbjct: 345 PSPFIDEFNARLDSFSNNIGQQKSTGRDVEALHVNGTTIPVRVSIGHACIEGKSLFVMYI 404

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
             L  + E  R   + +  F        RS +TNI G  
Sbjct: 405 SDLRHRIEMQRALIKSEAQF--------RSLITNIPGIA 435


>gi|239787450|emb|CAX83922.1| Sensor protein [uncultured bacterium]
          Length = 1574

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/656 (18%), Positives = 234/656 (35%), Gaps = 58/656 (8%)

Query: 166  LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV-----WHRDQAGDILWANI 220
            +R     G   E    + +          F+ LFD++   V     +H  +   I   N 
Sbjct: 439  IRDRVSKGAMEEAMRVSERR---------FRALFDTMSSGVAIYEPFHDGEDFIIKEFNR 489

Query: 221  SYKK--NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-SY 277
            + ++   +    ++  K       +    + +         ++    VS  +   ++   
Sbjct: 490  AGRRISASGARDLIGLKITEAFPGIRDFGLFEVFQRVHRTGESAYHPVSWYQDERHRGWL 549

Query: 278  KIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                     GE   I  D++++    +QL      + N T  +     +  + + N S  
Sbjct: 550  DNHVYRLDTGEIVAIYDDLTEKRLAEEQLRLAQASIENSTDWVVWSKPDGGILWMNPSGR 609

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            E     L  L     +D  L          E   W   K N   ++++    +D    P 
Sbjct: 610  EHLGYSLEDLRGMTISD--LNPGHPREMWAEH--WAALKANRSLLFEAGVMGRDGALQPV 665

Query: 397  GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
              + + +   N R   + +  ++  +   E        +   + DH+    A        
Sbjct: 666  EVSANYLEFEN-REYNVAIVRHIGERKQAEESLRRYAAIVSASRDHM----AFIDTGYIY 720

Query: 457  KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            +  N  +                   +  + +  + E     + A +      ER + QG
Sbjct: 721  RAVNQTYLDCHGLPIEAF--------VGHSVAALFGEEFFGRIKALMDHCLKGERINYQG 772

Query: 517  TLE--LLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIK 569
             ++  +     ++ S  P       +T       + T+    E  L    E  R+A+  K
Sbjct: 773  WIDFPVAGKRWMDVSYFPHHREDGEVTGLVVVSRDATERKFMEDELRASEEQARQANRAK 832

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
              F+ ++S+E+R+P+  I+G   L   +    L S+Q  Y+E I  +S  LL L+NDILD
Sbjct: 833  GEFLANMSHEIRTPMNAIVGMAYLAMQT---GLTSQQRGYLEKIQGASHALLRLINDILD 889

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLG-SFVADRQRL 687
             + +DAG +++      L+ +L  V   +  K+     + + +   G L      D  RL
Sbjct: 890  FSRIDAGKLEMENLPFELDQVLGGVFDGLLPKLARKGGVELLLDCPGDLPRRLRGDGVRL 949

Query: 688  LQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFV 743
             Q+ + +  NA+ F+  G     + L+A  +    + F V ++G  I  +  + +   F 
Sbjct: 950  GQVLTNLCDNAIKFTEAGEVAVSIRLEAMDEEQLTYAFVVTDSGIGIDPEQIERILQPFQ 1009

Query: 744  SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC-----RIPSKE 792
                   RR  G GLGL+I  + + + GG   + S+    +         R P +E
Sbjct: 1010 QADSSTTRRYGGTGLGLAICRNLVTMMGGVFQVDSAPGRGSRFAFTARFGRFPKEE 1065


>gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 1358

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/495 (17%), Positives = 185/495 (37%), Gaps = 24/495 (4%)

Query: 302  NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             +       +L ++   I + +++  + + N +  ++                   F  +
Sbjct: 732  REGEAQVRRVLESIRDGIMVIERDWRITYMNGAGRDIIAGRGVDPEAIIGLSHWDAFPHA 791

Query: 362  ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
            A    E    +  ++ +   +++       ++ P  +   V V     GG    F ++T 
Sbjct: 792  AGTFVEDHLRRAMEDRVMVEFEN-------FYAPWQRWFAVRVYPVDEGGVSIYFHDITD 844

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + + +       +      + + + V +  G D  +   N  +          L     +
Sbjct: 845  RKEADAALRISQERWHGLAESMPQLVWIAPGQDAGVSYLNEQWAIYTGRPIGELINEGWV 904

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             N+     +   ++    + A  +   +   +   G         +              
Sbjct: 905  DNLHPDDRQPMFDTWNAAVAAEGLYDIEYRLRRFDGGYRWFKTRGVPVREASGRLNGWYG 964

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            T  ++ D V A  A          A+  K+ F+ ++S+E+R+PL  I+G T ++   K  
Sbjct: 965  TCTDIQDMVEARVA-------AESANRAKSEFLANMSHEIRTPLNAIVGLTHIMLNYKTD 1017

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +    +Y++ +  S+  L+ L+ND+LDLA ++A  ++L  +   L++++ E       
Sbjct: 1018 PAS--HGKYLQTMKDSADTLMQLINDVLDLARIEADRVELEMAPCPLHEVVRECLGITEV 1075

Query: 661  KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
            K  E  +   +      G+ V  D  RL QI   +LSNA+ F+  G   V + AA    +
Sbjct: 1076 KGAEKGLACGLDFGLPHGTVVETDVLRLKQILMNLLSNAVKFTQTGRIDVEVSAAPARSE 1135

Query: 719  ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                   V++ G  I  D  + +F +F        RR  G GLGL+I      + GG ++
Sbjct: 1136 LLPVTIRVRDTGVGIAADKIEHIFAQFTQEDASITRRFGGSGLGLAISRRLSEMLGGRLT 1195

Query: 774  ISSSDEGVTTINCRI 788
            + S     T  +  +
Sbjct: 1196 VESEVGKGTVFSLSL 1210



 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A      + EAL + D  K +F  +VS+E R+PLT ++   + +      +   +  + 
Sbjct: 318 QAYEDERSRAEALAELDRAKTAFFSNVSHEFRTPLTLLLAPLEEVLADP--ATTPRDRER 375

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++  + ++  LL LVN +LD + ++AG  +  +  + L     E+  +  + M    +  
Sbjct: 376 LDVANRNALRLLKLVNVLLDFSRIEAGRTQAAFQPVNLACYTAELASNFRSAMDRAGLAY 435

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K+          AD +   ++   ++SNA  ++ +G  V +  +  +G  + +V++ G  
Sbjct: 436 KLDIQPLSQPVYADVEMWEKVVLNLISNAFKYTLEGE-VEISLSEADGHAVLAVRDTGPG 494

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE     VF RF  V         G G+GL++V   + LHGG V + S     +T   R
Sbjct: 495 IPEHERAHVFTRFHRVEGVTGRSIEGSGIGLALVRELVRLHGGEVWLKSETGRGSTFFVR 554

Query: 788 IPS 790
           +P 
Sbjct: 555 LPL 557


>gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 693

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 151/379 (39%), Gaps = 19/379 (5%)

Query: 418 NLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++T  +     +     +     ++  +E V      GRI  ++  F +L          
Sbjct: 28  DMTEALQDRLWQIAESEERYRVLVEATTEAVVQRDGQGRITFASAGFAALLGM------- 80

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +  I +T S    E    +  A  +   ++    + G     S   +  S   +   
Sbjct: 81  -KPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMPVSGS-VDGP 138

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +VT  V A R L E       A+  K+ F+  VS+ELR+PL  I+G  DLL  
Sbjct: 139 NWLRAGQDVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLD 198

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+ +Q  YVE    S   LL LV+ ILD + ++AG + L      +  L+  V +
Sbjct: 199 TR---LDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVE 255

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
            +A +  +  + I +     L +  V D  R+ QI   +  NA+ F+  G  V +  AR 
Sbjct: 256 LLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAGG-VGVSLARS 314

Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                   + +V++ G  IPE+    +F  F          G GLGL+I    +    G 
Sbjct: 315 GEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGT 374

Query: 772 VSISSSDEGVTTINCRIPS 790
           +   S+    +T    +P 
Sbjct: 375 IEARSTVGRGSTFRVVLPL 393



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 166 LRILSLDGIYSELAE-TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LR        S++ E    +  +++     ++VL ++    V  RD  G I +A+  +  
Sbjct: 17  LRRREPVVPESDMTEALQDRLWQIAESEERYRVLVEATTEAVVQRDGQGRITFASAGFAA 76

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
               + +           L  + I++      A      E       G  + +  + +  
Sbjct: 77  LLGMKPLEL-----IGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMPV 131

Query: 285 SFGEAGI-----AIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S    G        DV+  +     L           VA + F
Sbjct: 132 SGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAANVAKSRF 174


>gi|170288964|ref|YP_001739202.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
 gi|170176467|gb|ACB09519.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
          Length = 412

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 168/389 (43%), Gaps = 33/389 (8%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +++FE L   VD   +  + V+V  +     ++ LSE + +   +G+I   N   R L +
Sbjct: 46  LYLFERLKKYVDNLKETISRVEVSRDNFLTILNSLSEPIFILDREGKITFLNEIARELVQ 105

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              N      +           + +    ++    I S + +  +L  T           
Sbjct: 106 GRINPEGRPYY---------EIFEDYYINEMVEETIKSEEPQEGTLV-TYVGNEKKYFHV 155

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +IP+        FV +   V  ER L          DE++  F+  VS+ELR+PLT+I 
Sbjct: 156 KVIPVELKSGDKIFVILFHDVTKERKL----------DEMRREFIATVSHELRTPLTSIH 205

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ + L    L +      ++++ I   S  +  L+ND+LDL  ++   +      + L 
Sbjct: 206 GYAETLLEDDLEN-KELVKRFLKIIEEESARMTRLINDLLDLEKMEESEVNFEMKDVDLC 264

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS---SKG 705
           +++  V + I     EN + + V  +  +     +++RL+Q+   ++ NA+ ++    KG
Sbjct: 265 EVVEYVYKIIQPIAEENEVDLIVECEDVV--VKGNKERLIQMLLNLVDNAVKYTSLKEKG 322

Query: 706 ST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
              V ++A       +  VK+ G  IP++    +F +F         +  G GLGL+IV+
Sbjct: 323 EKKVWVRAYDTPDWVVVEVKDTGPGIPKESQSRIFEKFYRVDKARSRKMGGTGLGLTIVK 382

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + ++ HGG + + S     T +   +P +
Sbjct: 383 TIVDKHGGKIEVESEINQGTVMRVFLPKR 411



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +S+     D       IL++L+  I I D+   + F N    EL  +            E
Sbjct: 63  ISRVEVSRDNF---LTILNSLSEPIFILDREGKITFLNEIAREL--VQGRINPEGRPYYE 117

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + E       + E +  +  +E     Y  +E  K  +H+   + + V + S      + 
Sbjct: 118 IFEDYYINEMVEETIKSEEPQEGTLVTYVGNE--KKYFHV---KVIPVELKS-GDKIFVI 171

Query: 415 MFENLTVQVDLETKYNTLVKV 435
           +F ++T +  L+      +  
Sbjct: 172 LFHDVTKERKLDEMRREFIAT 192


>gi|150398896|ref|YP_001322663.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150011599|gb|ABR54051.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 620

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +    L EKN  L+K D++K+  +  VS+E+R+PLT+I G+ +L+    +G +N+ Q
Sbjct: 372 ELEKRALELEEKNTELKKLDDLKSDLIAIVSHEIRTPLTSIKGYVELVLDEAVGKINNSQ 431

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +     +   L  L++ +LDL+ +  G ++++   I +   ++EV   +     E N
Sbjct: 432 RKCLTTARENVVRLNRLISSMLDLSKLAKGELEMHREEINIKKTIDEVIDDLKPISAEKN 491

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKN 725
           I I +  D       AD+ R+ Q+F  ++ NA+ FS +   + +K   + +GD   +VK+
Sbjct: 492 INITLEIDD--IIINADKDRMKQVFINLIENAIKFSPENEIIEIKGKEEYHGDVSITVKD 549

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP+D  + VF+RF       +R  +G GLGL++ +S I  HGG + + S      T
Sbjct: 550 NGEGIPKDKLEKVFDRFYQADLSPKRKGKGTGLGLAVCKSIIQAHGGSIWVKSEIGKGCT 609

Query: 784 INCRIPS 790
               +P 
Sbjct: 610 FYIVLPK 616


>gi|260174306|ref|ZP_05760718.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315922574|ref|ZP_07918814.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696449|gb|EFS33284.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 713

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 173/375 (46%), Gaps = 16/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +E       +   + +D+++  + V   D   +  +N +FR    +   R +   
Sbjct: 202 TKRWQVEISLQQSQRTMQKVLDNINANIFVSDYDSLEVLFANKSFREEAGSVPERATCWK 261

Query: 479 HIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQG--TLELLSDSVLEYSIIPLP 534
            +         +  +    D    +  +  ++D     +   T++ ++ + L+       
Sbjct: 262 MLNAGLGGACTHCPKPQLLDANRKLTGVHFWEDYNSVTERWYTIQSMAINWLDGR----- 316

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               M    ++T   + E  L E  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 317 -WAIMELATDITTRKQVELELIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL 375

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L   +  Y+  +  ++ +LLNL++DILD++ ++AG ++L    + +  L  EV
Sbjct: 376 AETDEIEL---RQAYMSLVQENNELLLNLISDILDISKIEAGTIELTTGWVDVPQLCREV 432

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + + K H+  + ++           AD+ R++Q+ S  ++NA+ F++KGS  +     
Sbjct: 433 IATFSHKKHDGAVELRFDESSPQIVIDADKNRIMQVLSNFMTNALKFTTKGSITLSYTLN 492

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D+G   F V + G  IP + C  +FNRFV      Q  G GLGLSI +S +   GG + +
Sbjct: 493 DDGQVRFCVTDTGKGIPAEQCHDIFNRFVKLDSFVQ--GAGLGLSICQSLVERMGGKIGV 550

Query: 775 SSSDEGVTTINCRIP 789
            S     +      P
Sbjct: 551 ESCVGKGSCFWFTHP 565


>gi|92117002|ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91799896|gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
          Length = 775

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 111/523 (21%), Positives = 208/523 (39%), Gaps = 50/523 (9%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANKL 365
                L+     +  +D +R   F ++S   +  ++        S  +LL F   SA   
Sbjct: 249 RIDTALNRGRCGLWDWDLSRGRIFWSQSMFTMLGLE--------SRSDLLTFGEISALAN 300

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-----SNPRGG--TIWMFEN 418
           P+ ++     + + S                G  + + V          G    I +  +
Sbjct: 301 PDDIDLFAIGDQLISGKIHHIDQSFRMRHSGGHWIWLRVRCELSQGAGDGAAHLIGIAVD 360

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T Q  L  K         + I+ + E   ++  D R+ L N  F+ L K  E+ ++ GT
Sbjct: 361 ITEQKSLAEKTVEADLRLRDAIETIPEAFVLWDADDRLVLCNSHFQRLHKLPESAVAAGT 420

Query: 479 HIRNIAA------TCSRYYNESDGWDLFAAIITSFDD-------ERKSLQGTLELL---- 521
               +         C+R                  D+       ER++  G    +    
Sbjct: 421 SYETVIEVGRMHEICARPPETGTTAPGARTFEAQLDNGCWLNISERRTKDGGYVSVGTDI 480

Query: 522 ------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
                       +D  L  ++I L   Q  L    +  +  A++   ++ +    A+  K
Sbjct: 481 TRIKEHEQKLVDNDLRLRATVIDLKRTQATLEQQAIELADLAQKY-AKEKDRAEDANRAK 539

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDIL 628
           + F+ ++S+ELR+PL  IIGF++++     G+L + K S+Y   I  S   LL ++ND+L
Sbjct: 540 SKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSEKYSEYCHDILTSGQYLLEVINDVL 599

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG MKL+   + L+  L E  + +  +  +  +   V  D  + +  AD + + 
Sbjct: 600 DMSKIEAGRMKLDMEPLDLSRTLAESLRVVTGRTSDKKLTFDVRIDDDI-AITADHRAVK 658

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH- 747
           QI   +LSNA+ F+  G  V+ ++         ++ + G  I     + +   F      
Sbjct: 659 QIIVNLLSNAVKFTPDGGRVMARSQVFANSVALTIADTGIGIAPHSLRKLGKPFEQVESQ 718

Query: 748 -RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 G GLGL+I +S +NLHGG + + S     T +   +P
Sbjct: 719 LTKTYAGSGLGLAIAKSLVNLHGGSMRLRSKPGTGTVVRVTLP 761


>gi|283851239|ref|ZP_06368522.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573408|gb|EFC21385.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 710

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 104/524 (19%), Positives = 194/524 (37%), Gaps = 65/524 (12%)

Query: 296 SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            +      +L HT +   +L           D    +   N     +   +   L  NP 
Sbjct: 57  EELRRTQAELAHTRDRYADLYDFAPAGYFTLDARGTVLEANLKGAAMLGRERDALPGNPF 116

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----- 406
           +D +L   R+A        +  +   I    ++          P+G  +   +++     
Sbjct: 117 SDHILPSDRAA--------FAAYLARIRETGRAGTLQIRLL-RPDGARVWAELSAEPKPP 167

Query: 407 -NPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPDGRIKLS 459
            +P G      +  ++T  V       T        +D     +         D  +   
Sbjct: 168 FDPLGAASLRMVATDMTEGVLARQDLAT-------VLDSAPIPIVKVRVTGDGDRVLVYQ 220

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           NPA   L+               +  +C  +    +     AA      D   +++    
Sbjct: 221 NPAAARLFGD-----------EALERSCKGFLCNKEVCPALAAESGVVRDRECAVK---T 266

Query: 520 LLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              + ++  +   LP+A   +   V+VT+ +R  R LT   EA   A+  K  F+  +S+
Sbjct: 267 RFGERIMYKTAHKLPDAPYIIEAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLATMSH 326

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  ++G T+L   +    L  +Q +Y++    S+  LL+++NDILD + ++AG M
Sbjct: 327 EIRTPMNGVMGMTELALQT---DLTPEQREYLDLARQSALSLLDIINDILDFSRIEAGRM 383

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSN 697
           +L  +   L   L    +            +++ ++       V D  RL Q+ + ++SN
Sbjct: 384 ELARAPFSLRRTLGSCLRLFDNLAARQGNDLRLAVAQEAPDGLVGDAGRLSQVIANLVSN 443

Query: 698 AMDFSSKGST-VILKAAR-----------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + F+  GS  V +  A                F+FSV + G  IP D    +F+ F   
Sbjct: 444 GLKFTRDGSVRVTVDTAPPLHCPLGPERGHAATFLFSVSDTGIGIPRDKHDHIFDYFTQL 503

Query: 746 AH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 +  G GLGLSI  + + L GG + + S     +T    
Sbjct: 504 DAGLSREAGGTGLGLSISRNLVALMGGRIWVESEPNRGSTFFFT 547



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 80/273 (29%), Gaps = 29/273 (10%)

Query: 51  LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDT 110
           L  +  E     +E+     +Y  L           D +    E   +    +   +   
Sbjct: 52  LELQNEELRRTQAELAHTRDRYADLYDFAPAGYFTLDARGTVLEANLKGAAMLGRERDAL 111

Query: 111 DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS 170
               F + +        +    ++R+ G++  L              R  G+  +  + +
Sbjct: 112 PGNPFSDHILPSDRAAFAAYLARIRETGRAGTLQIRLL---------RPDGARVWAELSA 162

Query: 171 --------LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR----DQAGDILWA 218
                   L      +  T +    L+        + DS    +       D    +++ 
Sbjct: 163 EPKPPFDPLGAASLRMVATDMTEGVLARQ--DLATVLDSAPIPIVKVRVTGDGDRVLVYQ 220

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N +  +    E +           L  +E+   + + S + ++    V T   G    YK
Sbjct: 221 NPAAARLFGDEALERSCKGF----LCNKEVCPALAAESGVVRDRECAVKTRF-GERIMYK 275

Query: 279 -IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
              ++ ++       +DV++ +     LT   E
Sbjct: 276 TAHKLPDAPYIIEAMVDVTELMRTRRNLTRAME 308


>gi|283851414|ref|ZP_06368695.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573152|gb|EFC21131.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 699

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/563 (17%), Positives = 200/563 (35%), Gaps = 53/563 (9%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
           + ++  ++  F + +     G  +             A +A  +S+             I
Sbjct: 5   LKAAEKIKSGFIDALRQRLAGLRR----SDAPEKGAPALVAAPISQ--------GLVSSI 52

Query: 312 LHNLTVA-IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           L  L    + +  +   L+  +R   EL  +    L      D  L              
Sbjct: 53  LEYLPEGMLVVEGEGLALRMVSRYAKELLGLSAEGLLERTYRDVSLHVPMYRQDAAAPAP 112

Query: 371 WKTWKENIFSVYKSSETH-KDTW--HLPNGQTLHVIVTSNPR-------GGTIWMFENLT 420
           ++     +    +S E   ++ W     +G  + V+  + P         G I  F ++ 
Sbjct: 113 FEAL--PLVRAVRSGELVTEEQWIVTRSDGYKIPVLCNAGPILDDSGRITGGILAFVDMV 170

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL-SNPAFRSLWKTEENRLSPGTH 479
               +E K     +   +        + +   D +I L  N +F  +             
Sbjct: 171 DTKLVEKKLQESEEKFKKVFTSSPGILLLMDLDKKIILDVNNSFTEILGYGR-------- 222

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +           D     A + T  + E +     L + +       I+   +   +
Sbjct: 223 -EEVRGQNVGVLGLIDAPGSGAGLETLLETEGRFSDQELVVRTREGASRIILASADVVQV 281

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                +    +    L E  E   +A+  K+ F+ ++S+E+R+PL  I+G T L   +  
Sbjct: 282 AGQRYLIAGGQDVTDLHEAREDAERANRAKSEFLANMSHEIRTPLNGILGMTSLALMTC- 340

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              + K  +Y+     S   LL ++NDILD++ +++   +L  +     + L  + Q++ 
Sbjct: 341 --TDHKGREYLGLAQQSGQHLLGIINDILDISKIESQRFELEKAEFNPRETLENLFQTMR 398

Query: 660 TKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG 717
            +     +R    ++       + D  RL QI+  ++ N++ F++ G   V +  A  +G
Sbjct: 399 VEADAKGVRFDATVAPDVPDCVIGDEGRLRQIYVNLIGNSIKFTTAGEVEVRVAVAATDG 458

Query: 718 D-------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
                          I S+++ G  IP+   K +F+ F   +   +  G GLGLSI +  
Sbjct: 459 RREPAAMGGKGRICLISSIRDTGIGIPQKNLKRIFDTFAQVSVGARYGGTGLGLSISKRL 518

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           + L GG + + S     +T +  
Sbjct: 519 VELMGGRIWVESEPGRGSTFHFT 541


>gi|167748905|ref|ZP_02421032.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662]
 gi|167651527|gb|EDR95656.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662]
          Length = 940

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +  + E        K+ F+  +S+E+R+P+  I G TDLL+  +   L     + ++ 
Sbjct: 551 RIMQSELEKAEAKSRAKSEFLSQMSHEIRTPMNAITGLTDLLRMEE--KLPDGAREKLQK 608

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I ASS  +L+L+NDILD++ ++ G + +      L +LL+ + + +  +  E  I  + +
Sbjct: 609 IHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTELLDGLIEMMEVQAEEKQIHFEFV 668

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNG 727
            + +      D  RL Q+ + +LSNA  F+  G  V L    ++     G++ FSVK+NG
Sbjct: 669 REIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVTLTVREEHRDVSTGEYFFSVKDNG 728

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I +D  K +F  F    A   +  G GLGL I  S I   GG++ + S     +    
Sbjct: 729 IGIAQDRQKQIFEAFEQLGASSARSEGTGLGLPISSSIIKAMGGNLMVESQTGKGSEFYF 788

Query: 787 RI 788
           R+
Sbjct: 789 RL 790


>gi|297544880|ref|YP_003677182.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842655|gb|ADH61171.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 456

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 147/364 (40%), Gaps = 22/364 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N         +  +  GV  F  + RI L N A + +   +   L  G HI  I   
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDNNERILLINDAAKKILNIKGKYL-IGKHILEIVR- 162

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  S  +DLF  +  + +   KSL+  +      V    I+   + Q +   + + 
Sbjct: 163 ------NSKLYDLFEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIID 216

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     R            ++I+N FV +VS+ELR+PLT+I GF + L+   + +    +
Sbjct: 217 DITEMRRL-----------EKIRNEFVANVSHELRTPLTSIRGFIETLRNGAIEN-PEAR 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++ I   S  L  L+NDIL L+ ++            L++ + ++   +       N
Sbjct: 265 DKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKN 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +    +        ++ R  Q+   ++ N + ++ +G  V +    +    I  VK+N
Sbjct: 325 ITLIKDLNCPGLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVKDN 384

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F RF        R   G GLGL+IV+  +    G +S+ S     T  
Sbjct: 385 GIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKF 444

Query: 785 NCRI 788
             + 
Sbjct: 445 IMKF 448



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 23/227 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +ND+      IL ++   +  FD N  +   N +  ++  I   +L        +LE 
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDNNERILLINDAAKKILNIKGKYLIGKH----ILEI 160

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +R++        ++  K+N  S  KS E +    HL    +  +   S+   G + + ++
Sbjct: 161 VRNSKLYDL---FEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIIDD 217

Query: 419 LTVQVDLETKYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +T    LE   N  V          +  +  G      +G I+  NP  R          
Sbjct: 218 ITEMRRLEKIRNEFVANVSHELRTPLTSIR-GFIETLRNGAIE--NPEARD--------- 265

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                I   +   +R  N+         +   +  E   L   +E +
Sbjct: 266 KFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEETELDNEIEDI 312


>gi|297616558|ref|YP_003701717.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144395|gb|ADI01152.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 592

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 102/412 (24%), Positives = 166/412 (40%), Gaps = 27/412 (6%)

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD-LETKYNTLVK---VQGETI 440
            E  +    +  G     I      G    + + +   V+ L+ K N L          +
Sbjct: 197 EEITEVAQAMAEGDLKRRIRGQRDMGEVAILAQAMNRMVEKLDEKMNELAATKNRLETVL 256

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            +   GV   G  G I   NPA R L    E  ++   H+       +R Y  +D  D  
Sbjct: 257 TNTVNGVIFIGQGGDILYINPAARRLLDVGEKDVTGKHHVE-----VTRSYALADSVDFV 311

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
                    E       L  L    +E +I+P+     +   + V         L + +E
Sbjct: 312 FQEGQPLKKEF-----VLHNLGGKAVETNIVPVKQEAGLQGVLVV---------LNDISE 357

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L++ + I+  FV +VS+ELR+PL  I GF + L      S N    Q+   I   +  +
Sbjct: 358 -LKRLETIRKDFVANVSHELRTPLAAISGFAETLMME--NSDNPAVQQFARIIYDEAQRM 414

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             +VN +L L+ +++   +L+     L   L+ V Q    ++ E  ++++V         
Sbjct: 415 TRMVNSLLQLSKLESVGAELDQEEFDLGQCLDTVLQGFEPRLSEKRLKVEVELPENGLVV 474

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            ADR R++Q+   +L NA  FS    TV ++     G+ +  V + G  IPE+    VF 
Sbjct: 475 RADRDRIVQVLMNLLDNATRFSPPDGTVTVRGTLLPGEILVEVIDEGPGIPEEEAARVFE 534

Query: 741 RFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF        R  GVGLGL+IV+  +  HGG V + S     +     +P K
Sbjct: 535 RFYRVDKARTRGQGVGLGLAIVKHIVEAHGGRVGVRSVPGNGSVFYFSLPGK 586


>gi|299133557|ref|ZP_07026751.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591393|gb|EFI51594.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 812

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 105/529 (19%), Positives = 211/529 (39%), Gaps = 62/529 (11%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANKL 365
                L+     +  +D +R   F ++S   +  ++        S ++LL F   +A   
Sbjct: 245 RIDTALNRGRCGLWDWDLSRGRIFWSQSMFTMLGLE--------SRNDLLAFGEVNALVH 296

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFEN 418
            E ++     + + S   S           +G  + + V        SN     I +  +
Sbjct: 297 SEDIDLMAIADQLLSGQISHIDQTFRMRHADGHWIWLCVRCELTEAGSNGGCHLIGIALD 356

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T Q  L  +         + I+ + E   ++  + R+ L N  F+ L K  ++ ++ GT
Sbjct: 357 ITEQKSLAARSVEADLRLRDAIETIPEAFVLWDSENRLVLCNSHFQRLHKLPDSAVTAGT 416

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
               +              ++ A +  +      S     +L   S L  S     +   
Sbjct: 417 PYETVIEV-------GHMPEIRARVADTEISAPGSRTFEAQLNDGSWLNISERRTKDGGF 469

Query: 539 MLTFVNVTDSVRAERAL-----------------------------------TEKNEALR 563
           +    ++T   R E+ L                                    E+     
Sbjct: 470 VSVGTDITQIKRHEQRLVDNDLRLTAYVVDLKRSQAALEQQARELADLAQKYAEEKRRAE 529

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLN 622
           +A++ K+ F+ ++S+ELR+PL  IIGF++++     G L S +  +Y + I  S   LL+
Sbjct: 530 EANQTKSKFLANMSHELRTPLNAIIGFSEVMGRGMFGPLGSGRYQEYCQDILTSGNYLLD 589

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           ++ND+LD++ ++AG MKL+   + L + ++E  +  ++      + +    DG +   VA
Sbjct: 590 VINDVLDMSKIEAGRMKLDPEKLDLAETVSESTRVASSWADGKRLTLDSRIDGAIP-IVA 648

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR+ + QI   +LSNA+ F+  G  +++++       + ++ + G  IP++    +   F
Sbjct: 649 DRRAMKQILVNLLSNAVKFTPDGGRIVVRSRIIGDRVMVTIADTGIGIPKEALARLGCPF 708

Query: 743 VSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                       G GLGL+I +S + LH G + + S     T +   +P
Sbjct: 709 EQVESQLTKSYHGSGLGLAIAKSLVQLHSGSMKLRSQLHIGTVVRINLP 757



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 82/245 (33%), Gaps = 26/245 (10%)

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS---TL 269
           G I W+   +      E      A GE   L   E    M  +  L       +     +
Sbjct: 265 GRIFWSQSMF-TMLGLESRNDLLAFGEVNALVHSEDIDLMAIADQLLSGQISHIDQTFRM 323

Query: 270 EHGNNKSY------KIVRVLNSFG--EAGIAIDVSKEITVN----DQLTHTYEILHNLTV 317
            H +          ++    ++ G    GIA+D++++ ++     +      + +  +  
Sbjct: 324 RHADGHWIWLCVRCELTEAGSNGGCHLIGIALDITEQKSLAARSVEADLRLRDAIETIPE 383

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           A  ++D    L   N  F  L ++  + +      + ++E       +PE        E 
Sbjct: 384 AFVLWDSENRLVLCNSHFQRLHKLPDSAVTAGTPYETVIEVGH----MPEIRARVADTEI 439

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-NTLVKVQ 436
                ++ E       L +G  L++       GG + +  ++T     E +  +  +++ 
Sbjct: 440 SAPGSRTFEAQ-----LNDGSWLNISERRTKDGGFVSVGTDITQIKRHEQRLVDNDLRLT 494

Query: 437 GETID 441
              +D
Sbjct: 495 AYVVD 499



 Score = 40.7 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 87/319 (27%), Gaps = 23/319 (7%)

Query: 2   MAGMATIGIGKGIEICTLFSCKIAVFGTIAGML-LTTIIPIILLIRQRNSLAKKVNETYS 60
           +A   T+    G  I        +     A  + L+     ++LI      A     T +
Sbjct: 176 LAAQRTLDTASGSVIVMQAQNAASWRSDTALQITLSATTGFVVLI---LGFAFHWQSTRA 232

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIP-QTDTDLLSFENWL 119
             S++ +   +       N     +WD       I         +  ++  DLL+F    
Sbjct: 233 RESDLINDAVRGRIDTALNRGRCGLWDWDLSRGRIFWSQSMFTMLGLESRNDLLAFGEVN 292

Query: 120 KFHHYIKLS-KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS-------- 170
              H   +   A       GQ   +    Q       +G     C    +          
Sbjct: 293 ALVHSEDIDLMAIADQLLSGQ---ISHIDQTFRMRHADGHWIWLCVRCELTEAGSNGGCH 349

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           L GI  ++ E      +        +   +++       D    ++  N  +++  +   
Sbjct: 350 LIGIALDITEQKSLAARSVEADLRLRDAIETIPEAFVLWDSENRLVLCNSHFQRLHKLPD 409

Query: 231 IVFQKAIGESRKL---FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSF 286
                       +      EI+ R+  +           + L  G+     I  R     
Sbjct: 410 SAVTAGTPYETVIEVGHMPEIRARVADTEISAPGSRTFEAQLNDGS--WLNISERRTKDG 467

Query: 287 GEAGIAIDVSKEITVNDQL 305
           G   +  D+++      +L
Sbjct: 468 GFVSVGTDITQIKRHEQRL 486


>gi|260892898|ref|YP_003238995.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
 gi|260865039|gb|ACX52145.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
          Length = 418

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 151/370 (40%), Gaps = 32/370 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +     +     +  L E V     +GR+ L+N A + L+                   
Sbjct: 76  AELIREKEQLEAILSGLDEAVLALDQEGRVLLANRAVKELFDIAP------------EEA 123

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVN 544
             +   E         ++    D     +  L  LS    +      PLP  + ++    
Sbjct: 124 RGKAVLEVVRDHRLEELVGRVRDTGTPTEQELTFLSPQPRIFVVRASPLPPDKVVVVLRE 183

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VT   R ER   E              FV +VS+ELR+PLT I GF + L+   L    +
Sbjct: 184 VTRERRLERMRRE--------------FVANVSHELRTPLTAIKGFVEALEDGALEDRET 229

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q ++++ I++ +  L++LV D+L L+ ++     L    + LN+L++ +      +  E
Sbjct: 230 AQ-EFLQIIASETERLIHLVEDLLKLSRLENRQTFLRRQEVNLNELIHNIALVWRRRAEE 288

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +  +V     L   + D + L Q+F  ++ NA+ ++  G  V ++    +G     V+
Sbjct: 289 KGLAFEVDLPPGLPLVLGDPELLTQVFVNLIDNALKYTPVG-RVRIRGEYQSGWVRIEVE 347

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP+D    VF RF        R   G GLGLSIV+  + LHGG V + S     +
Sbjct: 348 DTGIGIPQDCLPRVFERFFRVDRARSRASGGTGLGLSIVKHIVELHGGKVGVESELGKGS 407

Query: 783 TINCRIPSKE 792
                +PS +
Sbjct: 408 RFWVYLPSPQ 417



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +   +  +      IL  L  A+   DQ   +   NR+  EL++I             +L
Sbjct: 74  QLAELIREKEQLEAILSGLDEAVLALDQEGRVLLANRAVKELFDIAPEEARGK----AVL 129

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           E +R  ++L E +        +      +E  + T+  P  +   V  +  P    + + 
Sbjct: 130 EVVRD-HRLEELV------GRVRDTGTPTE-QELTFLSPQPRIFVVRASPLPPDKVVVVL 181

Query: 417 ENLT 420
             +T
Sbjct: 182 REVT 185


>gi|218779864|ref|YP_002431182.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761248|gb|ACL03714.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1177

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 110/540 (20%), Positives = 224/540 (41%), Gaps = 47/540 (8%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIA--IFDQNRYL 328
           +++  +    S  E  I I+V +     D L         +  N  V +    F+ +  +
Sbjct: 260 RAFNAMSEKLSRAEDKIQIEVQERKEAQDALDQSEDNYQRLYENAHVGLFKTRFENDG-I 318

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              N  F  +            ++ E+L  +   ++  +  +++  +E + S  +  E  
Sbjct: 319 TACNTRFARMLGY--------KTSQEVLGLILGPDRYADPADYQRLRERLAS-LEDVEHF 369

Query: 389 KDTWHLPNGQTLHVIVTS--NPRGGTI-WMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           +  +   +     + +++    +G ++  M  + T +     +  +  K      ++  E
Sbjct: 370 ETLFKKVDDSAFWIRLSARLTDQGESVEGMAIDFTTEKTAIEQIKSAEKKFRGIFENAQE 429

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTE---ENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           G+     +G     NPA   +   +   E     G  +R I      +++  +  D  + 
Sbjct: 430 GLFQCASEGSFISVNPAMARILGYDSPVELLQKLGPGVREI------FFSPEEYSDFRSE 483

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-----VNVTDSVRAERALTE 557
           +          +Q   +  S +    S   + N +T          ++ +  + E A+  
Sbjct: 484 LEARGKVAGMEVQFNKKDGSLAWGSISATLVKNTETGALMLEGSLEDIEERKQHEAAILA 543

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           KN+    A++ KN F+  +S+E+R+P+T IIG T+LL  +    L  +Q+QY++ + +++
Sbjct: 544 KNQ-AVAANQEKNRFLAALSHEMRTPMTAIIGMTELLNET---GLTQQQAQYIKLMKSAN 599

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+LV+D++D++ VDAG +KL      L +L+ +  +++A K HE N+ +      K 
Sbjct: 600 EQLLSLVSDVMDISRVDAGRLKLETIPFNLLELVEKACETMAEKAHEKNLELACSVSPKT 659

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSS 729
               + D  RL Q+ + ++ NA+ F+ KG  V+       GD         F V + G  
Sbjct: 660 PIHLLGDPYRLKQVLNNLMQNAVKFTEKGEVVVTVRDAAEGDKKDGQAVIEFCVSDTGIG 719

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     S+F+    +         G G+GLSI    + +  G  ++SS  E  +T    
Sbjct: 720 IPSKRLASLFDHMAKDNDVDFHHYGGTGVGLSISRKLVEMMKGDFTVSSKLEQGSTFCFT 779


>gi|260171368|ref|ZP_05757780.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315919679|ref|ZP_07915919.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693554|gb|EFS30389.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 637

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 100/453 (22%), Positives = 190/453 (41%), Gaps = 32/453 (7%)

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKS------------SETHKDTWHLPNGQTLHV 402
           L E + S  +     + + +K+    +  S             E  K  W   +  +   
Sbjct: 65  LFEDIDSFYRFVHPDDTEAYKQAFAEMLSSDSKTSQIRVRCIGEQGKVVWLEDHFLSYKE 124

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              S+P     +   N+T Q + E     L +   + I+ L E          I + +  
Sbjct: 125 SCKSHPGKLLAYTV-NVTSQCEKEQHIKYLEEYNRKIIEALPE---------FIFIFDDN 174

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL 520
           F                +  +     R     +  DLF   I     D + K ++  +E+
Sbjct: 175 FFITDVLMAPGTILLHPVEVLRGADGRSIYSPEVSDLFICNIRECLQDGQLKEIEYPVEV 234

Query: 521 LSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                  +  I P    + +    ++ D +   + L E       AD++K+ F+ ++S+E
Sbjct: 235 DGGVHYFQARIAPFEGNRVLALIHDIGDRILRSQELIEAKRRAEDADKMKSVFLANMSHE 294

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++++  ++      ++ +Y+E I  +S +LL L+NDILDL+ +++G  +
Sbjct: 295 IRTPLNAIVGFSEIIAVTEG---EEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSE 351

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +++  + +  L+ EV++    KM   N+ +KVI          DR R++Q+    LSNA+
Sbjct: 352 MHFQQVEIAGLVEEVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAI 410

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             + KGS + L    +       V + G  I ++    +F RF       Q  G GLGLS
Sbjct: 411 KNTEKGS-ITLGLKHEGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ--GTGLGLS 467

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +S +   GG + ++S     +     +P +E
Sbjct: 468 ICKSIVERLGGRIEVTSELGQGSVFALYLPYQE 500


>gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
 gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
          Length = 1367

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 129/681 (18%), Positives = 246/681 (36%), Gaps = 68/681 (9%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            L  +  ++ E     K L       + LFD+ + L++     G  L+ N ++KK T    
Sbjct: 401  LTKVGKDITENRKVMKALKQSNEALQDLFDNSNDLIFICSMRGKFLFVNKTFKKKTGYTN 460

Query: 231  IVFQKAIGESRKLFKEEIKKRMISS------SALEKNFCETVSTLEHGNNKSYKIVRVLN 284
               +K       L  ++ KK  +S+           NF   +S  E GN      V    
Sbjct: 461  KELKKM--NILDLLHQDTKKSTLSTVKSIIQGETVYNFITILSHKEGGNLYLEGSVTCRF 518

Query: 285  SFG----EAGIAIDVSKEITVNDQLTHTYEI--------------------LHNLTVA-- 318
              G      GI  D + +I      T  Y I                    L N+  A  
Sbjct: 519  EDGKPTAMRGILHDTTDKIRAEKAQTLYYSIANLTVRSKNMNQFYQSIHRELGNVIQAKN 578

Query: 319  --IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK----LPEQLNWK 372
              I ++D +     ++    E +      +  N ++  L E++  + K      E++   
Sbjct: 579  FYIKLYDSDHRQMSYHYYVDEAFASGGLEIRQNKTDKGLAEYVVESKKALFLYEEEIQAL 638

Query: 373  TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT------------ 420
               E +     + +           + + +I   + R   I+  ++L             
Sbjct: 639  AEAEGLILSGPAPKIWIGVPLKFENEVIGLISVKSYRDRNIYTIKDLELLDFVSGQIALA 698

Query: 421  -VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTEENRLSPGT 478
              +   E K ++         +  S  +     + ++   N  +   L +      +   
Sbjct: 699  IQRKRNEAKLSSKTAQLQAIFESSSHVMWSINRNWKLTSFNHNYAETLQRQYGVSPTLNR 758

Query: 479  HIRNIAATCSRYYNESDGWDL----FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             +  ++A   +  N      +    F      F+ E  +  G        +    +    
Sbjct: 759  GLIQLSAKLRKTNNYKVWQKMYENAFKGETQYFEIESDTQDGETWWREVYLNPIRLEDGR 818

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              +      ++T     E+ +    E   K+ ++K  F+ ++S+E+R+P+  IIG  DL+
Sbjct: 819  IEEVSAISHDITQKKLVEQEVIRAKEIAEKSLKVKERFLANMSHEIRTPMNGIIGMIDLM 878

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +    L +KQ +Y+  I  SS  LLN++NDILDL+ ++AG M L+   + +  ++ +V
Sbjct: 879  MDT---PLENKQQEYMYTIKKSSETLLNILNDILDLSKLEAGKMALHPKPMDIRFMVEKV 935

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
                  +    N  +    D K+  F+ AD  RL+QI S ++SNA+ F+  G   +    
Sbjct: 936  YTLFLQQAKAKNNFLSYQVDPKIPYFLEADETRLIQIISNLMSNAIKFTEDGQVAIKFTL 995

Query: 713  ARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINL 767
            A         +  V ++G  I  +    +F+ F    +       G GLGL+I +    L
Sbjct: 996  ASKGELSVHLLVEVADSGLGISPEDQNRLFSTFTQLDNSSSKSYSGTGLGLAISKELCRL 1055

Query: 768  HGGHVSISSSDEGVTTINCRI 788
              G + + S     +T     
Sbjct: 1056 MNGDIGVISEIGHGSTFWFTF 1076



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 54/432 (12%), Positives = 126/432 (29%), Gaps = 42/432 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           ++ +  K +S   S F+ + +    L+   +      + +  + + T   G   ++ I E
Sbjct: 150 QSQISQKIISESESQFRTIANHAPVLLRMSNPQHQFYFFSKQWLEFT---GKTVEEEINE 206

Query: 240 S----RKLFKEEIKKRMISSSALEKNFCETVSTLEH--GNNKSY------KIVRVLNSFG 287
                      E  K  +  S  ++   E V  L    G  +         +    +  G
Sbjct: 207 GWLKNVHPTDYEGVKNHLLKSFEKQKKYEVVYRLLRHTGQYRWIVEKGVPYLDARNHFRG 266

Query: 288 EAGIAIDVSKEITVNDQLTHTYEI------LHNLTVAIAIFD----QNRYLQFHNRSFVE 337
               A+D++++    ++      I             + +       +  +   N     
Sbjct: 267 YIASAVDITEQKMAEEEAKRIQLIKETKTRFQEALEGVNLMGISVTTDGTVTMCN----N 322

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            W+    +           +     ++ PE+ N           +++SE    T     G
Sbjct: 323 YWQKVTGYTKEEIVGKNYFDLFVQESERPERWNEFDKTLQNGGFWETSERTILT---KTG 379

Query: 398 QTLHVIVTSN-------PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
              ++   S          GG   + +++T    +        +   +  D+ ++ + + 
Sbjct: 380 DVRYIQFNSVILNNEKGELGGLTKVGKDITENRKVMKALKQSNEALQDLFDNSNDLIFIC 439

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              G+    N  F+         L     +  +     +    +    +    + +F   
Sbjct: 440 SMRGKFLFVNKTFKKKTGYTNKELKKMNILDLLHQDTKKSTLSTVKSIIQGETVYNFITI 499

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEALRKADEI 568
               +G   L  +  +                 + TD +RAE+A  L      L    + 
Sbjct: 500 LSHKEGG-NLYLEGSVTCRFEDGKPTAMRGILHDTTDKIRAEKAQTLYYSIANLTVRSKN 558

Query: 569 KNSFVQHVSYEL 580
            N F Q +  EL
Sbjct: 559 MNQFYQSIHREL 570


>gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
 gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
          Length = 1364

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 103/621 (16%), Positives = 216/621 (34%), Gaps = 79/621 (12%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y+    T      + + +   ++          +++   +  +T   L  G         
Sbjct: 269 YRSGIPTGASARWRPVVQLLPIYGRTWIITAHPTASFVASLNQTSPWLVGG--LVMAASV 326

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +L +      +  + +E  +  Q+     ++ + + AI     +  +   N +   ++  
Sbjct: 327 LLAALLALYFSNGLRREEVLRKQME-LAALVSHSSEAIVAETPDGRITHWNPAAEVMFGY 385

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                      D  L        +P+        ++       + +   +    +G  +H
Sbjct: 386 TAE---DAIDQDLTLLLSPQPYAMPQ-------IDHTDDALPPNASAAQSMRHRDGHHVH 435

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETK---YNTLVK---------------VQ 436
           V+ +  P         G    F +++ +V    +    N  ++               +Q
Sbjct: 436 VLASKAPIIEPDGTLSGHSHFFRDISERVRSHQRIVDLNASLEHQVAERTSELVKFSVLQ 495

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYY 491
              + H    +      G + L N A   L       +                  +   
Sbjct: 496 RAILAHAGYAIIATDSSGFVTLFNRAAEKLLGYNAEDVIGRRKASQFVEPEELQDRAHLL 555

Query: 492 NESDGWDLFAAIIT------------------SFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +E  G  +   +                    S D  R  +  TL  L D   +      
Sbjct: 556 SEQTGVPVAQTLEAVAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDNDQVI---- 611

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +   V++T+    E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   L
Sbjct: 612 ---GYLGVAVDLTEQKMHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYL 668

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+ S+   L       V  I  S+  LL ++NDILD + ++AG + L  +   LN L + 
Sbjct: 669 LQRSE---LPGAAQDMVTKIDRSARTLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDN 725

Query: 654 VKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   + + +    + + V          + D  R+ Q+   ++ NA+ F+ +G  V+   
Sbjct: 726 IADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVR 785

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
              +GD      +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    I
Sbjct: 786 RFPSGDPNKVKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLI 845

Query: 766 NLHGGHVSISSSDEGVTTINC 786
            L GG + + S     +    
Sbjct: 846 ELMGGELEVESVPGRGSEFYF 866


>gi|237801381|ref|ZP_04589842.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806664|ref|ZP_04593368.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024240|gb|EGI04297.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027778|gb|EGI07833.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 1117

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 131/738 (17%), Positives = 258/738 (34%), Gaps = 94/738 (12%)

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
           +G  F +         ++  G    S    R  ++  + +  A  +     L N+    +
Sbjct: 139 QGDRFIVQFIDPLARNLQAPGLDIASEERRRNAAIQAMLTGTATLSAPVTLLQNNDDHMR 198

Query: 197 VLFDSLDF-----------------------LVWHRDQAGDILWANIS-----YKKNTET 228
            +   L                          +  R+  G++   N       Y  +   
Sbjct: 199 SVLFMLPVYITPETPPDSTQRETSLIGWTYAPLAMREVMGNLDPVNHRLHLRLYDVSEGK 258

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSS------ALEKNFCETVSTLEHGNNKSYKI-VR 281
           + I      G   ++ +    +R I              F   +  +  G      + V 
Sbjct: 259 QQIYQTPENGPEPEILQTYAFEREIYGRVWRMEVGAHPQFVVALDPVPAGRVFIIGVLVS 318

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           ++ +     + +   ++            I+ N + AI     +  +   NR+  +++  
Sbjct: 319 LMLTVLVGTLLVSRQRKQQFIAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFGY 378

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           D   +    S    L          EQL  +  +  + S  ++   HK      +GQ + 
Sbjct: 379 DEGEVLG--SPLAPLLVPPPLVHEDEQLLKRVARGELGSTLETQRLHK------SGQLID 430

Query: 402 VIVT----SNPRGGTIW---MFENLTVQVDLET---KYNTLVKVQ--------------- 436
           V +T        G  +    M  ++T +  +E    ++N  ++ Q               
Sbjct: 431 VTITCSFIREADGTILGAAKMMHDITDRKRVERYLIEFNAQLEQQVSERTAELSRVAGLL 490

Query: 437 GETIDHLSE-GVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNI--------AA 485
              +D  SE  + V  P G+I + N     L  +   E        + ++        A 
Sbjct: 491 QAVLDASSEVSIIVIDPQGQIVVFNRGAELLLGYGNSEMVRRKDPSVFHLPEEVAARSAE 550

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTML 540
               Y     G D+F         E +         +   +   + P+  A       + 
Sbjct: 551 LSREYGTSIVGIDVFFYKADREGSETRQWTYVRRDGTTVPVSMIVTPIRTADGEVIGHLG 610

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T+ +     L     +   A+  K+ F+ ++S+E+R+P+  +IG + LL  +   
Sbjct: 611 IAQDITERLHRNAELHAAKASAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNT--- 667

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +LN +Q Q +  +  +   LL ++NDILD+A ++AG M+L  +      L +E+ +  + 
Sbjct: 668 ALNDQQRQLLTKLQIAGRSLLGIINDILDIAKIEAGEMRLENNPFSPRLLFDELSELFSP 727

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +  E  +R  V +     G  + D  R+ QI   ++ NA+ F++ G   V +    D  D
Sbjct: 728 QAQEKGLRFSVSVVTPLPGLLIGDALRVNQILMNLVGNALKFTTVGGVDVTVSCESDTAD 787

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 SV++ G  IP D+   +F+ F        RR  G GLGLS+V       GG V 
Sbjct: 788 TCWLRLSVQDTGCGIPADVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLSEQMGGRVG 847

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S     +     +P +
Sbjct: 848 VESELGAGSEFWVSLPFR 865


>gi|323706107|ref|ZP_08117676.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534551|gb|EGB24333.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 453

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 168/396 (42%), Gaps = 24/396 (6%)

Query: 401 HVIVTSNPRGGTI-WMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            + + S    G + +    ++ ++     +           +  L  GV  F  + RI L
Sbjct: 77  RIEIKSIDEIGQLSFAINTMSDKLQETIDELYDRNAKLEAILKSLVNGVVAFDENERILL 136

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N + R++   ++N  + G HI ++          S   D+   II    D+  ++    
Sbjct: 137 INDSARTMLGIKDNY-AVGKHILDVVR-------NSKFHDVLEKIIK---DKGYNIDNFE 185

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               +  L+    P+ +  T      V         +      +RK ++I++ FV +VS+
Sbjct: 186 IDTFNKHLKIYSSPIVHQVTHKKLGFVV--------IINDITEIRKLEKIRSDFVANVSH 237

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT+I GF + L+   + ++  ++ +++E I   +  L  L+NDIL L+ ++    
Sbjct: 238 ELRTPLTSIRGFIETLREGAIDNI-ERRDRFLEIIEFEAERLTRLINDILTLSEIENLKE 296

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                 IV+++ +NE+   +     + NI++    + K       + RL Q+   ++ N 
Sbjct: 297 GFVKEDIVIDEEINEIFYIMEKTAEDKNIKLIKDLNCKDVVIKISKDRLRQMIINLVDNG 356

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + ++ +G  V +       + +  V+++G  I ++    +F RF        R   G GL
Sbjct: 357 IKYTPEGGYVKVTTTDMENNIVIEVEDSGIGISKENIPRLFERFYRVDKGRSRKLGGTGL 416

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+IV+  +    G +++ S     T     +P  +
Sbjct: 417 GLAIVKHIVESMKGSITVESEVGKGTKFAIVLPKDQ 452



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 280 VRVLNSFGEAGIAIDV------SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
           ++ ++  G+   AI+            + D+      IL +L   +  FD+N  +   N 
Sbjct: 80  IKSIDEIGQLSFAINTMSDKLQETIDELYDRNAKLEAILKSLVNGVVAFDENERILLIND 139

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           S   +  I   +       D ++   +  + L + +  K +  + F +  +   H   + 
Sbjct: 140 SARTMLGIKDNYAVGKHILD-VVRNSKFHDVLEKIIKDKGYNIDNFEI-DTFNKHLKIYS 197

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDH 442
            P      V   ++ + G + +  ++T    LE            +  T +      I+ 
Sbjct: 198 SP-----IVHQVTHKKLGFVVIINDITEIRKLEKIRSDFVANVSHELRTPLTSIRGFIET 252

Query: 443 LSEGVA 448
           L EG  
Sbjct: 253 LREGAI 258


>gi|159905754|ref|YP_001549416.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887247|gb|ABX02184.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 639

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 125/243 (51%), Gaps = 4/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L      L++ D +K+  +  VS+ELR+PLT+I G+ +L+    +G++N  Q + 
Sbjct: 394 KHAEELKASYNELKELDNLKSELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKC 453

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++    +   L  L+  +LDL+ ++ G +++    + L  ++ +V + +     E NI++
Sbjct: 454 LQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVIEYLQPIATEKNIKL 513

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K   +    +  AD+ R+ Q+ + ++ NA+ FS    ++++ A  ++      V ++G+ 
Sbjct: 514 KKEIEE--IAIDADKDRITQVLTNLIENAIKFSPANESIMISADLEDEHVHLRVTDHGAG 571

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP+   + VFNRF       +R   G GLGL++ +S +  H G + + S     +T +  
Sbjct: 572 IPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHII 631

Query: 788 IPS 790
           +P 
Sbjct: 632 LPL 634


>gi|89052756|ref|YP_508207.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88862305|gb|ABD53182.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 716

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 180/382 (47%), Gaps = 19/382 (4%)

Query: 422 QVDLE---TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +V+LE    +     +   + +    +G A+F  D R+  +NPAF  ++    +     T
Sbjct: 67  EVELEVVTERALMAQRRLWDALTATEDGFAIFDRDWRLVAANPAFFLIFDGISDVTEGAT 126

Query: 479 H--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           +  I  +A        +    D +   + +  ++       ++L + + +  +    P  
Sbjct: 127 YEAILRVATEEGIVDLQGQNADDWVEEMVARWEKVPIPNVDVKLWNGAYIRLNDKQTPQG 186

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +   V++T ++R ER L+E  +A   A+  K+ F+ ++S+E+R+P+  ++   +LL+ 
Sbjct: 187 DFVSLSVDITPNIRRERELSEARDAAEAANRAKSHFLANMSHEIRTPMNGVVSMAELLRD 246

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +L+ +Q  Y + I +S   LL ++NDILD + ++AG ++L+  T  LN ++ E+ +
Sbjct: 247 T---ALDEEQQMYADTIRSSGEALLVIINDILDFSKIEAGKLELHEETFDLNAMVGEIFR 303

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712
            I   +   ++ +++  D  L    + DR R+ QI + ++ NA+ F+ KG  V ++    
Sbjct: 304 LIQPGIASKDLELRLDYDIFLPPLLIGDRGRMRQILTNLIGNAVKFTEKGH-VTVRVLSV 362

Query: 713 ----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                 D       V+++G  I  D  + VF  F        RR  G GLGL+I +  I+
Sbjct: 363 PPMDQPDALGISIVVEDSGVGIAPDQQEHVFGEFNQVEDEANRRHDGTGLGLAITKRLIS 422

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L GG + + S     +     I
Sbjct: 423 LMGGKMWLESEVGRGSAFGFTI 444



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 5/150 (3%)

Query: 294 DVSKEITVNDQLTHTYEILHNLT---VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +V  E+     L     +   LT      AIFD++  L   N +F  +++  ++ +    
Sbjct: 67  EVELEVVTERALMAQRRLWDALTATEDGFAIFDRDWRLVAANPAFFLIFD-GISDVTEGA 125

Query: 351 SNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           + + +L        +  +  N   W E + + ++          L NG  + +     P+
Sbjct: 126 TYEAILRVATEEGIVDLQGQNADDWVEEMVARWEKVPIPNVDVKLWNGAYIRLNDKQTPQ 185

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           G  + +  ++T  +  E + +         
Sbjct: 186 GDFVSLSVDITPNIRRERELSEARDAAEAA 215


>gi|298482642|ref|ZP_07000826.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271105|gb|EFI12682.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 637

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 112/513 (21%), Positives = 209/513 (40%), Gaps = 42/513 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            K   + +       +L    +A+  +D       F N  F  L   D   +      D+
Sbjct: 14  EKSELIRENSQEILSVLAAHQIALWEYDIITGKCSFSNDYFFTLGLKDAGIIFE--DIDD 71

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKS------------SETHKDTWHLPNGQTLHV 402
              F+      PE + +  +K+    +  S            SE  K  W   +  +   
Sbjct: 72  FYRFIH-----PEDIEF--YKQAFAEMLSSDSKTSQIRVRCISEQGKVIWLEDHFLSYKE 124

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              S+P     +   N+T Q + E     L +   + I+ L E          I + +  
Sbjct: 125 SCESHPGKLLAYTV-NVTSQCEKEQHIKYLEEYNRKIIEALPE---------FIFIFDDN 174

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLEL 520
           F                +  +     R     +  DLF   I     D + K ++  LE+
Sbjct: 175 FFITDVLMAPGTILLHPVEVLRGADGRSIYSPEVSDLFICNIRECLRDGKLKEIEYPLEV 234

Query: 521 -LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             S    +  I P    + +    ++ D ++  + L E       AD++K+ F+ ++S+E
Sbjct: 235 DGSLHYFQARIAPFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHE 294

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++++    +     ++ +Y+E I  +S +LL L+NDILDL+ +++G  +
Sbjct: 295 IRTPLNAIVGFSEIIA---VTESEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSE 351

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +++  + +  L+ EV++    KM   N+ +KVI          DR R++Q+    LSNA+
Sbjct: 352 MHFQQVEIAGLVEEVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAI 410

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             + KGS + L    +       V + G  I ++    +F RF         +G GLGLS
Sbjct: 411 KNTEKGS-ITLGLKHEGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDF--VQGTGLGLS 467

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +S +   GG + ++S     +     +P +E
Sbjct: 468 ICKSIVERLGGRIEVTSELGQGSMFALYLPYQE 500


>gi|67924012|ref|ZP_00517464.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67854152|gb|EAM49459.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1068

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 162/369 (43%), Gaps = 13/369 (3%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                    +D+ +E +     + +I L N A    +    N +        I +  +  
Sbjct: 461 ESQARFAGILDNANEAIISIDENQKITLFNHAAEQTFGYTSNEVLGQPFNLLIPSRFTNN 520

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-PNAQTMLT--FVNVTD 547
           + +                 R+ + G  +  ++ + E SI  + P  +T+ T    ++T+
Sbjct: 521 HYQYINSFKNTQETARQMGGRRPVFGQRKDGTEFLAEVSISKIKPRGKTIFTAIIRDITE 580

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +AE AL +  E    A+  K+ F+  +S+ELR+PL  I+GFT +++  +   LN    
Sbjct: 581 RKQAEEALKKAKEKADAANCAKSEFLASMSHELRTPLNAILGFTQVMQRDQ--ELNPDHK 638

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q +E I  S   LL L+NDIL++  ++AG    N +   L  LL+ ++  +  K  E N+
Sbjct: 639 QNLEIIGRSGEHLLELINDILEMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKNL 698

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAAR---DNGDFI-- 720
           ++       L  ++  D  +L Q+   +L NA+ F+ +G  +  +K      DN + I  
Sbjct: 699 QLLFEKIENLPQYIETDESKLRQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIILT 758

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           F V++ G  I  +    +F  F      R    G GLGL I + F+ L GG +S+SS   
Sbjct: 759 FEVEDTGPGIAPEEVDQLFEAFGQTETGRNSNEGTGLGLPISQKFVQLMGGEISVSSVLG 818

Query: 780 GVTTINCRI 788
             +     I
Sbjct: 819 RGSLFTFTI 827



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 92/288 (31%), Gaps = 24/288 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL- 356
           +  + +       +L      I  ++      F +  + E+       L  +    + L 
Sbjct: 35  QENLRESEERWQLVLKGTNEGIWDWNLKTDEMFFSPRWKEMLGYSEQELPNHIDTWKQLL 94

Query: 357 ---EFLRSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGT 412
              +  R    L +    KT  ++  + ++   +     W L  GQ L      NP    
Sbjct: 95  HPQDRERVMKILGDHFAKKT--DHYSAEFRLKCQDGNYKWILSRGQALWDEA-GNP-VRM 150

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
                +++ + + +    +L       ID + + V      G  K+ N AF +    +  
Sbjct: 151 AGSHTDISDRKNEQILLTSL-------IDCIPDLVFYKDSKGVYKMCNNAFETFAGRDRK 203

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +             +  + E D + +        ++      G   L+      +    
Sbjct: 204 YIIGRNDFDLFLTEEALAFREQDRFMMLQKQSRRNEEWITYPNGNRRLVDTLKTPFCCPE 263

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                T+    ++TD  + E A+ ++ E        +++ + +++ +L
Sbjct: 264 GKLMGTIGISRDITDRKQKEEAIKKQAE--------RDALLSNIARQL 303



 Score = 40.7 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 114/352 (32%), Gaps = 45/352 (12%)

Query: 171 LDGIYSELAETT-------LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
           ++ + +E+           +  + L      ++++    +  +W  +   D ++ +  +K
Sbjct: 14  IEKLQAEITRLKAVQEATLIMQENLRESEERWQLVLKGTNEGIWDWNLKTDEMFFSPRWK 73

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMIS------SSALEKNFCETVSTLEHGNNKSY 277
           +            I   ++L   + ++R++       +   +    E     + GN K  
Sbjct: 74  EMLGYSEQELPNHIDTWKQLLHPQDRERVMKILGDHFAKKTDHYSAEFRLKCQDGNYKWI 133

Query: 278 KIVRVLNSFGEAG----IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
            + R    + EAG    +A   +      ++      ++  +   +   D     +  N 
Sbjct: 134 -LSRGQALWDEAGNPVRMAGSHTDISDRKNEQILLTSLIDCIPDLVFYKDSKGVYKMCNN 192

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +F      D  ++      D  L          E L ++  ++    + K S  +++   
Sbjct: 193 AFETFAGRDRKYIIGRNDFDLFL--------TEEALAFRE-QDRFMMLQKQSRRNEEWIT 243

Query: 394 LPNG--QTLHVIVTSN--PRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            PNG  + +  + T    P G   GTI +  ++T +   E       +      D L   
Sbjct: 244 YPNGNRRLVDTLKTPFCCPEGKLMGTIGISRDITDRKQKEEAIKKQAER-----DALLSN 298

Query: 447 VA--VFGPDGRIKLSNPAFRSLWKTEEN---RLSPGTHIRNIAATCSRYYNE 493
           +A  +   D      N    S+ K  +     +        + +    + +E
Sbjct: 299 IARQLIDQDLN-TAVNFVLESIGKFTQCDRSYIIRYFPQEKVWSMVHEWCDE 349


>gi|167763266|ref|ZP_02435393.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
 gi|167698560|gb|EDS15139.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
          Length = 624

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 108/538 (20%), Positives = 215/538 (39%), Gaps = 34/538 (6%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+G  K Y I  + +    +      S    +  +    + I  +L V I +++ +  
Sbjct: 102 TDENGKTKIYGIAEIQDGPYMS------SATQMLRQREQLLHNIYKHLPVGIEVYNTDGV 155

Query: 328 LQFHNRSFVELWEID--LAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKENIFSV--Y 382
           L   N   +E++ +      L  N  ++ +  + ++   K  E  ++ T++ +   V  Y
Sbjct: 156 LTDLNDKELEMFHLQRKEDLLGINIFDNPIFPKEMKEKLKKYEDADF-TFRYDFSKVGSY 214

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            + +T   T  L    T        P    + +  + T       K            ++
Sbjct: 215 YNPQTRTGTIDLVTKVTTLYDENHTPANY-LLINADKTETTVAYNKIQEFESFFELIGNY 273

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG------ 496
              G A +       L+                 GT +  I       + E         
Sbjct: 274 AKVGYAHYD-----LLTRQGDAQHSWYINIGEQEGTPLSRIIGVYRHIHPEDRRAMLGFL 328

Query: 497 WDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER 553
            +    +   F+ E + L   G+      +++  +  P  N+ + +    ++T     E 
Sbjct: 329 NNAAKGMEDKFNKEVRVLREDGSYTWTHVNLIVKTYAPERNSIELICINYDITRLKATEA 388

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E   ++D +K++F+ ++S+E+R+PL  IIGF+ LL          +++ Y+  I
Sbjct: 389 MLIDAKEKAEESDRLKSAFLANMSHEIRTPLNAIIGFSSLL---PHIEDAEERNHYISLI 445

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + ++ +LLN++ND+LDL+ ++AG ++L+     L+DL++E        + E  + +K   
Sbjct: 446 NHNNELLLNIINDVLDLSKIEAGHIELSPVWCNLSDLIDESCTECQPNVPE-GVTLKKRY 504

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                    D  R+ Q+ S ++SNA+  + +G  V +       +   SV + G  IPE+
Sbjct: 505 PATPNLIKQDPMRIKQVLSNLISNALKNTVQG-YVEISYETTPSETRISVSDTGRGIPEE 563

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F RF       Q  G GLGL I  S +    G + ++S+    +T     P +
Sbjct: 564 KLGIIFERFEKTDAFIQ--GAGLGLPICRSIMEHMNGTIEVTSTVNKGSTFTVVFPCQ 619


>gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
 gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
          Length = 837

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 117/587 (19%), Positives = 228/587 (38%), Gaps = 47/587 (8%)

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST----LEHGNNKSYKIVRV 282
           E E + ++        +  EE     +            ++     L  G   S +  R 
Sbjct: 265 EREIVSYRAVRHWPLWILVEEPYSAALKRWKDRVFIFFIITPAVFLLVVGLGHSVRKTRK 324

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           L       +    ++      +L      +  L   I   D++  L F N  +  L    
Sbjct: 325 LQRVARQAMDRSQARLARSEQELAVLMRSVQEL---IFRTDKDGLLTFVNARWEMLTGQS 381

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-- 400
                       +    R+  K+    N +          +S  T +  + LPNG+ +  
Sbjct: 382 SKMALGLRFEKIVEPQCRNQVKVLLDANSQ----------QSLRTCQAFFSLPNGKEILC 431

Query: 401 HVIVTSNPRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            + V    + G I  F     ++T +   +    T +  Q    +     + +      I
Sbjct: 432 EIAVVPLIKKGQIVGFAGSAVDVTARWKAQHDLQTQLAFQHLLFETTPLPLLITDEKNSI 491

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAA--------TCSRYYNESDGWDLFAAIITSFD 508
            L N A+         ++  G +++++ +          ++   +S    +  A I   +
Sbjct: 492 TLVNRAWEEFSGVSALQI-MGKYLKDVCSCDNASMQLMINQKVLDSGQKAVIDAKIIHAN 550

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              + +Q T   + DS  + +         +  FV+VTD   AE+A  E  +A  +A  +
Sbjct: 551 GYYRDMQITKAAIKDSRGKAT-------GVLSIFVDVTDFRAAEQATREARDAAEEAFRV 603

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL--LKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           K+ FV ++S+ELR+PL +IIGF +L  L++ K    + + S+    I ++   +L LVND
Sbjct: 604 KSEFVANMSHELRTPLQSIIGFAELGHLRSRK----SPQFSEMFNDIHSAGQRMLALVND 659

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD+A +++ +  ++   I L  L+  + + +    H+  I +++  +       AD  R
Sbjct: 660 LLDVAKLESAVGVIHLERIDLRGLIRPIARELEPLQHQKQIDLRLDLENFPMIAKADPVR 719

Query: 687 LLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             Q+   +L+NA+ FS     V ++    D+G+      + G  IP      +F  FV +
Sbjct: 720 FQQVVRNMLANAIKFSPNHGRVDVIGRFDDHGNICIDFSDQGPGIPPQELDQIFQPFVQS 779

Query: 746 AHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +       G GLGL+I    I+   G +S  +  +G       +PS+
Sbjct: 780 SKTKDGSGGTGLGLAICRKIIDAMDGTISAKNKPDGGAIFRITLPSR 826



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 91/306 (29%), Gaps = 25/306 (8%)

Query: 30  IAGMLLTTIIPIILLIRQRNSLAKKVNET-YSFLSEICDQLSKYH---SLLTENNCLTIV 85
           I  ++   +  +++ +       +K+       +     +L++     ++L  +    I 
Sbjct: 300 IFFIITPAVFLLVVGLGHSVRKTRKLQRVARQAMDRSQARLARSEQELAVLMRSVQELIF 359

Query: 86  WDGKDETPEII-GQLHQRIDIPQTDTDLLSFENWLKFHHYIK----LSKATEKLRKEGQS 140
              KD     +  +              L FE  ++     +    L   +++  +  Q+
Sbjct: 360 RTDKDGLLTFVNARWEMLTGQSSKMALGLRFEKIVEPQCRNQVKVLLDANSQQSLRTCQA 419

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           F       N   I  E  V       +I+   G   ++         L   ++   +LF+
Sbjct: 420 F---FSLPNGKEILCEIAVVPLIKKGQIVGFAGSAVDVTARWKAQHDLQTQLAFQHLLFE 476

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           +    +   D+   I   N ++++ +    +       +          + MI+   L+ 
Sbjct: 477 TTPLPLLITDEKNSITLVNRAWEEFSGVSALQIMGKYLKDVCSCDNASMQLMINQKVLDS 536

Query: 261 NFCETVSTLE---HGNNKSYKIVRVLNSF------GEAGIAIDVS----KEITVNDQLTH 307
                +       +G  +  +I +           G   I +DV+     E    +    
Sbjct: 537 GQKAVIDAKIIHANGYYRDMQITKAAIKDSRGKATGVLSIFVDVTDFRAAEQATREARDA 596

Query: 308 TYEILH 313
             E   
Sbjct: 597 AEEAFR 602


>gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 858

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 165/386 (42%), Gaps = 16/386 (4%)

Query: 415 MFENLTVQVDL-ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           + E  T Q+ L + +      +    ++ + + +     +G  K  N AF +     E  
Sbjct: 325 LVEERTDQLRLSQERLLKESALLKTILNTVPDLIFYKDMNGIYKGCNKAFGAFIGKSEQE 384

Query: 474 LSPGTHIR--NIAATCSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLSDSVLEYS 529
           +     +    ++   ++ + E D   +   + T   +E         + L +   L YS
Sbjct: 385 IIGKDDVELFQLSGNAAQKFIEDDLQVMRGKLDTLIREEEVLYPDGKRIYLETIKTLYYS 444

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
               P    +    N+      E+A  E  +   +A + K+ FV  +S+E+R+PL  IIG
Sbjct: 445 EDNAPFG-MVGISRNIQLRKETEKAYAEAIQRAHEASKAKSEFVARISHEIRTPLNAIIG 503

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LLK S    +   Q  Y+  +  S+  LL+++ND+LD + +++G +++  +T+ +  
Sbjct: 504 MNYLLKQSCTDPV---QESYLRKMELSAKNLLSIINDVLDFSKIESGKLEIEKNTLSIEK 560

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST- 707
           L+ +V      K    N   +   D  +    + D  R+ QI   ++SNA+ FS  G+  
Sbjct: 561 LVRDVVSINEPKAKAANESFETHIDPGIPDVLIGDTLRISQIMLNLVSNAVKFSHHGTIK 620

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
           + +   R +G+    +FSV++ G  + +     +F  F        R   G GLGLSI +
Sbjct: 621 IEVLCERVHGENVTLLFSVRDQGIGMSQQQLDKLFIPFTQADGSTTRKYGGTGLGLSICK 680

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
             + L  G +   + +   +T   R+
Sbjct: 681 MLVELMHGEIWAVTEEGVGSTFFFRL 706


>gi|94264869|ref|ZP_01288644.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93454690|gb|EAT04955.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 176/439 (40%), Gaps = 20/439 (4%)

Query: 366 PEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRG-----GTIWMFE 417
           PE+  W   W   +    +     +      +G  +   V       G     G      
Sbjct: 68  PEEAEWVGAWFTKLVERREPFRGLEHCSLKSDGSIVWQRVSGVPILDGAGELRGYRGAAL 127

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +           K     +D+  EG      + R+   N +   ++    + +  G
Sbjct: 128 DITQEKLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVL-G 186

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            +++ +        ++    +   + +       + +QG  +      L+ ++      +
Sbjct: 187 RNVKMLMPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQLAVSETLVGE 246

Query: 538 ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               + +  ++T+  R E    +  EA   A+  K+ F+ ++S+E+R+P+  IIG   L 
Sbjct: 247 ERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMNVIIGLGQLA 306

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S+      K   Y+E I+AS+T LL L+ND LDLA ++ G M ++     L+D+LN++
Sbjct: 307 LKSE-PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQIPFDLSDILNKL 365

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709
           ++ +  +  E  +++       +    V D  RL Q+   + SNA+ FS KG   +    
Sbjct: 366 EKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSDKGEVSLNFEM 425

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
             +  D      +V++ G  I  +  +++   F        R+  G GLGLSI    + L
Sbjct: 426 ADSTADTLTLRVTVRDTGIGIAPEQLETILQPFTQADGSSTRKYDGTGLGLSIANRLVQL 485

Query: 768 HGGHVSISSSDEGVTTINC 786
            GG + + S     ++   
Sbjct: 486 MGGKLEVESEPGQGSSFFF 504



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 78/270 (28%), Gaps = 20/270 (7%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQKAIGESRKLF 244
           KL+     F+ + ++    +W  D  G   +     +       E  + +          
Sbjct: 11  KLTEAEQRFRDVTEAAGEYIWELDSNGLYTFVTKPIETILGVPAEQALGRTPFDFMPPEE 70

Query: 245 KEEIKKRMISSSALEKNFC--ETVSTLEHGNNKSYKIVRVLNSFGEA------GIAIDVS 296
            E +           + F   E  S    G+    ++  V    G        G A+D++
Sbjct: 71  AEWVGAWFTKLVERREPFRGLEHCSLKSDGSIVWQRVSGVPILDGAGELRGYRGAALDIT 130

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +E      L    +    IL N        D  R +   N+S  +++      +      
Sbjct: 131 QEKLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVLGRNVK 190

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG- 411
             + +   S +         +  + I  + +  +  + T  +     L + V+    G  
Sbjct: 191 MLMPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIF---PLQLAVSETLVGEE 247

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGET 439
              +   +++T +   E       +     
Sbjct: 248 RLFVGSIQDITERKRQEALQRQAKEAAEAA 277


>gi|56421266|ref|YP_148584.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56381108|dbj|BAD77016.1| two-component sensor histidine kinase (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
          Length = 582

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 145/369 (39%), Gaps = 22/369 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++              I+++  G+      G I L N AF++ +  + +      +    
Sbjct: 231 EMSRAREIQTDRLHTLIENVGSGLLFIDHRGHISLINRAFQTQFHLDPSDCLHRPY---- 286

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               +      D       I  +    R+ ++ T+ +      +    P+         +
Sbjct: 287 ----ADVLPHGDIVRFIDDIFITETTMRRHMRLTIGIERKH-FDVYGAPIIGTNAEWKGI 341

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V      E         L++ ++I+  FV +VS+EL++P+T+I GF + L    +    
Sbjct: 342 VVVFHDITE---------LKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAMKD-E 391

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +    ++  I   S  L  LV ++LDL+ ++    +L    + +  ++ E       K  
Sbjct: 392 AALEHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAA 451

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I + + S   L     DR R+ QI   +L+NA+ ++ +   V ++A     + +  V
Sbjct: 452 EKQIDLHIESPSGL-VIRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEETEKEVLIHV 510

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I E     +F RF            G GLGLSIV+  +  H G+++++S     
Sbjct: 511 KDTGIGIEEKEIPRIFERFYRVDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASKVGRG 570

Query: 782 TTINCRIPS 790
           T      P 
Sbjct: 571 TVFTIHFPK 579



 Score = 41.5 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A  + +     + Q    + ++ N+   +   D   ++   NR+F   + +D +     
Sbjct: 225 LARHLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHISLINRAFQTQFHLDPSDCLHR 284

Query: 350 P-----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           P      + +++ F+             T + ++         H D +  P      +I 
Sbjct: 285 PYADVLPHGDIVRFIDDIFITE-----TTMRRHMRLTIGIERKHFDVYGAP------IIG 333

Query: 405 TSNPRGGTIWMFENLTVQVDLET 427
           T+    G + +F ++T    LE 
Sbjct: 334 TNAEWKGIVVVFHDITELKRLEQ 356


>gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 751

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 172/398 (43%), Gaps = 27/398 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV---FGPDGRI--KLSNPAFRS 465
             + + + +      E +     +     + ++  GV +       G I     +   R 
Sbjct: 202 YLVTVIDFIAKAARSEIQLKKSEERLEGIVQNIP-GVILQLEMSVSGNIYYTYISDQARE 260

Query: 466 LWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           ++  + +R+  +P   +R +     R    +       ++   +D   ++ +G       
Sbjct: 261 IFGEKVDRILQNPFATLRFMPKEKLRAIVHTIRNLDRISVPLGWDVRLRTRRGH------ 314

Query: 524 SVLEYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                ++   P+A+          +  +    +  L E  E   +A+  K++F+  +S+E
Sbjct: 315 RWFRVTVSVTPSAEGTFYLNAIILDTEEIHAYQERLKEAKEEAERANRAKSAFLATMSHE 374

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  IIG ++LL +S    L+ +  +Y   I  +   LL L+NDILD++ +++G +K
Sbjct: 375 LRTPLNGIIGMSELLMSS---GLSGELVEYARTIQTAGENLLALINDILDISQLESGKLK 431

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNA 698
           +      L  +L  V +++  +    N+R  +    ++ + V  D  RL Q+   ++ NA
Sbjct: 432 VERRPCDLKAVLLHVYKTLYPQTIHKNLRFVLEVASEIPAVVISDEARLSQVLFNLVGNA 491

Query: 699 MDFSSKGSTVILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
           + F+S+G  V+     +     + +F V++ G  IP +    VF RF         + +G
Sbjct: 492 IKFTSRGEVVLRVWMEEEEGRAELVFQVRDTGIGIPREELPRVFERFHQVDQGVTRRFQG 551

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGLSI +  + L GG + + S +   +    RIP +
Sbjct: 552 SGLGLSIAKDLVELMGGRIDVESEEGKGSCFTVRIPFQ 589


>gi|257059588|ref|YP_003137476.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            8802]
 gi|256589754|gb|ACV00641.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            8802]
          Length = 1319

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 169/381 (44%), Gaps = 36/381 (9%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                  V      +D+L +G+ V    G+I   N A   ++  +++    G H+  +   
Sbjct: 951  ETLQNTVADLNAIVDNLGDGLIVIDIYGQITRYNRALTEMFNLKDSP--QGQHLLEV--- 1005

Query: 487  CSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                        + A ++   + D++K +   +EL    + +  I  +            
Sbjct: 1006 ---------FPPVLATLLKPIEPDQQKVVTVEVELAQGKIGQALISKIIQGSYGQGTQKC 1056

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-------- 597
              +V   R +T + E     ++IKN F+  VS+ELR+PLT+++GF  L+           
Sbjct: 1057 IGAVILIRDVTAEREI----EQIKNDFLATVSHELRTPLTSVLGFAALILDKLNRVIFPW 1112

Query: 598  -KLGSLNSKQ-----SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
              +G   +++        +E I A S  L +L+ND+LD+A +++G ++ N+ ++    +L
Sbjct: 1113 VAIGDQPTQKAIQQVRNNLEIIVAESERLTSLINDVLDIAKIESGKVEWNFESVSPIIIL 1172

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                 S ++   + N+R+       L     D+ RL+Q+   +LSNA+ F+  GS V  +
Sbjct: 1173 ERAIISTSSLFEDKNLRLIRDFSPDLPLIRGDQDRLIQVVINLLSNAVKFTEVGS-VTCQ 1231

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            A ++    + ++ + G  IP +    VF+RF    +    + +G GLGLSI    I  HG
Sbjct: 1232 AQQNQEYLVIAITDTGIGIPHNEQNKVFDRFQQVGNVLTNKPQGNGLGLSICRQIIEHHG 1291

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G + + S     +T    +P 
Sbjct: 1292 GQIWVESQLGQGSTFFFTLPL 1312


>gi|307151157|ref|YP_003886541.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981385|gb|ADN13266.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 634

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 167/377 (44%), Gaps = 24/377 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            + E    T  +    T D + +GV +    G     N A   L     + L   +H   
Sbjct: 128 REAEEAALTSAREWQITFDTIRDGVGLLDSKGNFVRCNKAMTKLLDQPVHELIGNSHQDI 187

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLS-DSVLEYSIIPLPNAQTML 540
           +    +  Y            +T F   +++LQ   +E+ S +      I P+ N   +L
Sbjct: 188 LHLILNESY------------MTPFIRAKETLQRESIEIESKNKWYNIIIDPILNQHRVL 235

Query: 541 T-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           T      V++T+  + E+      E  ++A+ IK+ F+  +S+ELRSPL  I+G+  LLK
Sbjct: 236 TGAVFIIVDITERKQIEKEREILYEESQRANRIKDEFLAILSHELRSPLNPILGWASLLK 295

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           TSK  +   K    +E I  ++ +   L+ D+LD++ +  G + LN   + L  ++    
Sbjct: 296 TSKFNADTIK--HGLEIIERNANLQTRLIEDLLDVSRILRGKLILNTYPVELPSIIASAL 353

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +       +I I+   D  +G+  AD  RL Q+   +LSNA+ F+  G  V +   R 
Sbjct: 354 EIVQLSAKAKSIEIETKIDANVGAVQADPSRLQQVIWNLLSNAIKFTPSGGKVTIYLERI 413

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           +     ++ + G  I ++    VF+ F        R   G+GLGL+IV   + LHGG V 
Sbjct: 414 DKYAQITISDTGKGISKEFLPYVFDYFRQADSTTTRKFGGLGLGLAIVHHLVELHGGTVQ 473

Query: 774 ISSS-DEGVTTINCRIP 789
             S+ +    +   R+P
Sbjct: 474 AQSAGEGQGASFIVRLP 490



 Score = 45.3 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 298 EITVNDQLTHTYE---ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                  LT   E       +   + + D        N++  +L +  +  L  N   D 
Sbjct: 128 REAEEAALTSAREWQITFDTIRDGVGLLDSKGNFVRCNKAMTKLLDQPVHELIGNSHQDI 187

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L   L  +   P     +T +     +       K+ W+  N     ++       G ++
Sbjct: 188 LHLILNESYMTPFIRAKETLQRESIEIES-----KNKWY--NIIIDPILNQHRVLTGAVF 240

Query: 415 MFENLTVQVDLETKYNTLVKVQGET 439
           +  ++T +  +E +   L +     
Sbjct: 241 IIVDITERKQIEKEREILYEESQRA 265


>gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 609

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/415 (22%), Positives = 172/415 (41%), Gaps = 33/415 (7%)

Query: 386 ETHKDTWHLPNGQTLH--VIVTSNPRGGTIWMFENLTVQVDLETKYNTLV-KVQGETIDH 442
           E  K    + +G+      +  S+  G     F  +T ++      N    +     + +
Sbjct: 210 ELTKHARAVADGRFTEKTPVFGSDEIGQLSQAFNYMTSRLREALSQNEEEKEKLASILTN 269

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT--HIRNIAATCSRYYNESDGWDLF 500
           +S+GV      GR+ L N     +   E   L+      +  +  + S      +G D  
Sbjct: 270 MSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSLLGLEESESEALARGEGHDSK 329

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              IT  +     +           +  +  P+   +  +T          E+       
Sbjct: 330 LLEITPREGGEPFM-----------MRVTFTPIHRREIGITGTIAVLQDVTEQE------ 372

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASST 618
              K +  +  FV +VS+ELR+PLT I  +T+ L+    G+L  KQ   ++V  I   + 
Sbjct: 373 ---KLEASRREFVANVSHELRTPLTTIKSYTEALED---GALEDKQMGPRFVGVIQNETG 426

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            ++ LV D+L L+ +D+    L+     + ++L +V+   + +M + +IR  +     + 
Sbjct: 427 RMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVS 486

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKS 737
           + + DR  + Q+   ++SNA+ ++  G T+ + A+  + G    SVK+ G  IP+     
Sbjct: 487 TAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDR 546

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F RF        R   G GLGLSI    +  HGG +++ S  E  TT+   +P 
Sbjct: 547 IFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLPL 601



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 28/147 (19%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                  ++      IL N++  +   D+   +   NR   E+  ++   LA +     L
Sbjct: 251 EALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSLL 310

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK----DTWHLPNGQTLHVIVTSNP--- 408
                              +E+        E H     +      G+   + VT  P   
Sbjct: 311 -----------------GLEESESEALARGEGHDSKLLEITPREGGEPFMMRVTFTPIHR 353

Query: 409 ----RGGTIWMFENLTVQVDLETKYNT 431
                 GTI + +++T Q  LE     
Sbjct: 354 REIGITGTIAVLQDVTEQEKLEASRRE 380


>gi|240141277|ref|YP_002965757.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 698

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 151/379 (39%), Gaps = 19/379 (5%)

Query: 418 NLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++T  +     +     +     ++  +E V      GRI  ++  F +L          
Sbjct: 38  DMTEALQDRLWQIAESEERYRVLVEATTEAVVQRDGQGRITFASAGFAALLGM------- 90

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +  I +T S    E    +  A  +   ++    + G     S   +  S   +   
Sbjct: 91  -KPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMPVSGS-VDGP 148

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +VT  V A R L E       A+  K+ F+  VS+ELR+PL  I+G  DLL  
Sbjct: 149 NWLRAGQDVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLD 208

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+ +Q  YVE    S   LL LV+ ILD + ++AG + L      +  L+  V +
Sbjct: 209 TR---LDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVE 265

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
            +A +  +  + I +     L +  V D  R+ QI   +  NA+ F+  G  V +  AR 
Sbjct: 266 LLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTGG-VGVSLARS 324

Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                   + +V++ G  IPE+    +F  F          G GLGL+I    +    G 
Sbjct: 325 GEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGT 384

Query: 772 VSISSSDEGVTTINCRIPS 790
           +   S+    +T    +P 
Sbjct: 385 IEARSTVGRGSTFRVMLPL 403



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 166 LRILSLDGIYSELAE-TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LR        S++ E    +  +++     ++VL ++    V  RD  G I +A+  +  
Sbjct: 27  LRRREPVVPESDMTEALQDRLWQIAESEERYRVLVEATTEAVVQRDGQGRITFASAGFAA 86

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
               + +           L  + I++      A      E       G  + +  + +  
Sbjct: 87  LLGMKPLEL-----IGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMPV 141

Query: 285 SFGEAGI-----AIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S    G        DV+  +     L           VA + F
Sbjct: 142 SGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAANVAKSRF 184


>gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 175/390 (44%), Gaps = 24/390 (6%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            + LT++ +L  +            +H  + + +     ++   N ++  L       + 
Sbjct: 258 IQTLTIKREL-IRSEKEKTKLALVAEHAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIK 316

Query: 476 PGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL- 533
                  +     ++ N  +    L A    SF+       GTL       ++ S+ P+ 
Sbjct: 317 GKDLPSVLQLDKIQHANIFTLLQSLKAGTSVSFELTNNHKDGTLY-----WIDVSVTPIF 371

Query: 534 -PNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            PN   M       ++T     E  L +  +    +++ K++F+  +S+ELR+PL  I+G
Sbjct: 372 KPNGNIMHYVVVERDITKKKELENKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILG 431

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              +++++     + +Q + ++ +  S   LL+L+NDILD + ++   ++LN+++   ND
Sbjct: 432 MAQIIESNIK---DEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFND 488

Query: 650 LLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++ +  +  +   +  ++  + ++  +   F+ D+ R+ QI   ++SNA+ F+ KGS +
Sbjct: 489 VIDPIANTYLSICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHKGS-I 547

Query: 709 ILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
            L       A+        V++ G  I +   K +F  F+       R   G GLGL+IV
Sbjct: 548 TLNFSHTLTAKGEQAIQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIV 607

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +   +   G++S++SS+   T     +P +
Sbjct: 608 KQLTDTMKGYISVNSSEGKGTCFTLVLPLE 637


>gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1486

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 146/310 (47%), Gaps = 9/310 (2%)

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
               R+   ++   L+  ++     E++  Q +   L   +     I +  A         
Sbjct: 1036 ENHRWVASTNSHKLWGILVVHACREKRVWQNSEAQLLQQIANQLAIAIQQASLFEQLQVE 1095

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             +  +      +KN  L +A  +K+ F+ ++S+ELR+PL  I+G T+ L+    G +N +
Sbjct: 1096 IEDKQ------QKNAELDRATRLKDEFLANMSHELRTPLNAILGMTEGLQDEIFGQINER 1149

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q + ++ I  +   LL L+NDILD++ +++G ++L+ ++  +  L       +  +  + 
Sbjct: 1150 QRKSLKIIEQAGNHLLELINDILDVSKIESGQLELHCTSTEIIPLCQSSLAFVKQQAVKK 1209

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVK 724
             I++       +     D +R+ Q+   +L+NA+ F+ +G  V L+  +       F+VK
Sbjct: 1210 RIQLDFNISSNILMLTLDERRIRQVIINLLNNAVKFTPEGGKVGLEVVQIGENTVRFAVK 1269

Query: 725  NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I  +    +F  F+        Q  G GLGL++V+  ++LHGG VS++S     +
Sbjct: 1270 DTGIGIAAENIPKLFQPFMQIDSALNRQYTGTGLGLALVKRLVDLHGGEVSVTSELGVGS 1329

Query: 783  TINCRIPSKE 792
              +  +P  E
Sbjct: 1330 CFSVDLPLME 1339



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 86/284 (30%), Gaps = 15/284 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            ++  + +   +   +     + I   D   Y  + N  + E+  +     A     +++
Sbjct: 172 QEQRKLQESELNYTSLAEIAPIGIFRTDTQGYCVYVNPRWCEIAGLTSEE-AKGKGWEQV 230

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L      +++  Q      +  +F + Y+    + +  ++  GQ++ +   +    G + 
Sbjct: 231 L-HPDDDDEVSAQWYRSVEENRLFQLEYRFKRPNGEIRYV-YGQSVALRDINQQIIGYLG 288

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              ++T Q   E +    +++          G         I   +     ++  E    
Sbjct: 289 TITDITEQKKTEYRLKEALRLAKL-------GNWELDVQNNIGYWSEEVFHIFGREPQPF 341

Query: 475 SPGTH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           SP     +  +          S    L   I            G ++++ +         
Sbjct: 342 SPSFDGFLELVHPDDRSKVVASYTQHLEKRIPHEVVHRVPMPDGRIKVVVERCETAYDAE 401

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                ++ T  ++T+  + E  L         ++ +   F   +
Sbjct: 402 GKPIHSLGTVQDITEYYKQETILK--KLLAGTSNTLTQEFFSAL 443


>gi|144898581|emb|CAM75445.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 846

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 119/622 (19%), Positives = 223/622 (35%), Gaps = 32/622 (5%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFL---------VWHRDQAGDILWANISYKKNTETEG 230
           E     ++L +     + + +  D            W  D    ++    S  +   T  
Sbjct: 108 ELEHVAERLRDEA---RKVIEHPDVPPEVVILYATAW--DAEAGVMARFHSAVQAVLTGR 162

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
                       LF EE+  R     A E    + V  +      S     +L       
Sbjct: 163 GGVDALNHREAMLFNEEVASRYRQHVADEVRQLKLVLGVSF---TSLLGGLLLLFVLVLR 219

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            AI + ++       +   E +      + + D    + F N     L E     L    
Sbjct: 220 PAIAMVRQQISRQ--SALGEAIVQSGHGVLLLDDQGTVGFANTYAESLTEYGEGGLDGLD 277

Query: 351 SNDELLEFLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
               L        A+ + E     TW+ ++  V ++                 V+  +  
Sbjct: 278 LGRLLFSAYGDDTADIILETAARTTWRGDVRIVRRTGVMIWTEM---------VVTAAAS 328

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            GG + +F + T + + E K     +     I+ + +G A++  + R+   N  + +L  
Sbjct: 329 EGGYLVIFFDATARREAEAKLRQARERLAAAIEAVDDGFALYDAEERLVQCNRKYIALLP 388

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-QGTLELLSDSVLE 527
             E  L PGT   ++     +                     R    Q  L L    +L 
Sbjct: 389 QLEPWLVPGTSFASLIVHSWKLGLVDSELAAEQYTNLRLAQFRAGQGQCELRLRDGRILR 448

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +    P    +    +VT    +   L    E    A+  KN F+  +S+ELR+PL  I
Sbjct: 449 ATDRRTPEGGRVSVLADVTTLNASRDHLRRALEQAEAANRSKNVFLSSMSHELRTPLNAI 508

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF  LL+ +  G+    Q + V +I  +  +L  LV+ +L+LA +++G + L  +   L
Sbjct: 509 VGFAQLLEGTPDGAFGPSQRRSVGHILRAGKLLDELVHQVLELADLESGNVHLYLTDFDL 568

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             +  +    +  ++ E  + ++            D QR+ ++   +LSNA+ ++  G +
Sbjct: 569 AAVALDACSRLKNRLQEGQLELRQTGCDSPVGAHGDAQRMAEVIGHLLSNAIKYNRPGGS 628

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFIN 766
           + L      G    +V+++G+ IP D+   VF  F      G    G G+GL+I  + I 
Sbjct: 629 IDLSVDNMVGKVRLTVRDSGNGIPPDLHDQVFQPFNRLGGEGAAVEGTGIGLAICRALIQ 688

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
             GG +  SS+    +T    +
Sbjct: 689 QMGGAIGFSSTLGQGSTFWVEL 710


>gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 878

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 133/243 (54%), Gaps = 11/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L + N  L+KA E K+ F+ ++S+E+R+PL  I+G +DLL+ S    LN  Q  YV+ 
Sbjct: 480 QHLIDLNVQLKKASETKSEFLANMSHEIRTPLNVIVGMSDLLEES---PLNEDQKHYVDI 536

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
              +   LL+++NDILD++ ++AG++ L  + + L+ L+N++ +    K  E N+ + V 
Sbjct: 537 SKKAGHNLLSIINDILDISKIEAGLLTLEKTEVDLHSLVNDITEMFELKAREKNLELSVY 596

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNG 727
           +S+     F+ D  R+ Q+ S ++SN++ F++ GS + ++  ++     G+ IF V + G
Sbjct: 597 LSEDTHSIFMGDPTRIRQVLSNLISNSLKFTTDGS-IRVEVMKNQTEMEGNLIFHVSDTG 655

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP D    +F  F        R   G GLGLSI +  + +  G +++ S     +  +
Sbjct: 656 IGIPRDKIPQLFQPFTQADSTITRKFGGTGLGLSISKRLVKMMNGDITVESELHRGSRFS 715

Query: 786 CRI 788
             +
Sbjct: 716 FSL 718


>gi|219852263|ref|YP_002466695.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219546522|gb|ACL16972.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 781

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 113/631 (17%), Positives = 236/631 (37%), Gaps = 57/631 (9%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANIS------YKKNTETEGIVFQKAIGESRKL 243
           + + +   + D++   V   D AG I++ N S      +K+       + +  + E  + 
Sbjct: 166 DRLHLQSRMLDAVADAVIATDPAGRIIYWNWSATRTYGWKEAEAMGQSLNEAVVRELSQD 225

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSFGE----AGIAIDV 295
             + + +++ S +A    F      + H +   + I      V +  GE     G + D+
Sbjct: 226 DADRMAEQLGSGNAWSGEFQ-----VHHRDGHLFPIHVNQAPVFDEDGEFVAVIGTSHDI 280

Query: 296 SKEITVNDQLTHT----YEILHNLTVAIAI----FDQNR-----YLQFHNRSFVELWEID 342
           S+   +   L  +       + N+  A AI    +  +       L   N +  +     
Sbjct: 281 SERKAIERALAESEAEARSFMDNMVDACAICETVYSPDGKPIDIRLVEVNAALAQELGRP 340

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLH 401
            A +A   +       +R    LP       W +    V+++    +     P  G+   
Sbjct: 341 AAEIAGWTAFK-----IRPELTLP-------WFDRFLEVHRTGAAMQFEEPFPVVGRWYR 388

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           +       G    +F N+T +   E             ++   + V +  PDG I  +N 
Sbjct: 389 IAAFPVRGGRVAVVFHNITERKQAEEALAESEDRYRSLVEKSIDAVLLSLPDGSILAANA 448

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               ++   E  L        I  +  R+    +      A    F  E    +    L 
Sbjct: 449 GASQIFGMTEEELIQAGRASLIDESDPRFTAAYEE----RARTGRFSGELTYRRKDGTLF 504

Query: 522 SDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
              V          A  + +   ++T     E +L   +E L+ ++E    F    S++L
Sbjct: 505 PGEVTSALFTDRNGAIMSTMIIRDITKRKEIEESLKIYSERLQVSNEELQRFAYIASHDL 564

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++PL +I+ F+ LL     G  +     Y+ +I      + NL+ D+L ++ ++  +   
Sbjct: 565 QAPLRSIVSFSQLLDRRYRGKFDKDADDYIRFIVDGGVRMQNLIKDLLLVSRIETQVQS- 623

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            ++      ++ +  +S+ T + E    + V     L   +AD  +L Q+F+ ++ NA+ 
Sbjct: 624 -FAPTDARTVVADTIRSLETLILEIGAVVTVD---PLPIVMADPPQLEQVFTNLIGNAIK 679

Query: 701 FSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           +      V++  +  R  G + F+V++NG  I  +    +F  F     + +  G G+GL
Sbjct: 680 YRRPEVPVVVWVSAVRQGGWWEFAVRDNGIGIEPEYFDQIFEMFSRLQTKDEYEGTGIGL 739

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +IV   +  HGG + + S+    +  +  +P
Sbjct: 740 AIVRKIVARHGGKIWVESTPGKGSIFHFTLP 770



 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 105/337 (31%), Gaps = 44/337 (13%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
           E +++ +    +  +   ET+  ++ G       + V              +  T+    
Sbjct: 6   ERLRQELEDLRSRNRELEETLDAIQSGE---VDAIVVSKEG--------RKEIYTLEGAD 54

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                ++  +            + + N +FV +    L+ +      D +          
Sbjct: 55  HLYRVLVEKIQEGALTLTVTGMILYANTAFVAMRRQRLSAIIGTSLRDHIA--------- 105

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWMFENLTVQVD 424
               +   + E +          +       G   + V +T     G+  +   ++ + +
Sbjct: 106 --PRDRSRFDELLTRSLTGPGRGEMLVCSGAGSFPVLVSMTPIMVDGSPKLSVVISDRKE 163

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
               Y+ L  +Q   +D +++ V    P GRI   N +    +  +E      +    + 
Sbjct: 164 ---DYDRL-HLQSRMLDAVADAVIATDPAGRIIYWNWSATRTYGWKEAEAMGQSLNEAVV 219

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TM 539
              S+   +     L +    S + +     G L       +  +  P+ +        +
Sbjct: 220 RELSQDDADRMAEQLGSGNAWSGEFQVHHRDGHL-----FPIHVNQAPVFDEDGEFVAVI 274

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            T  ++++    ERAL        +++    SF+ ++
Sbjct: 275 GTSHDISERKAIERALA-------ESEAEARSFMDNM 304



 Score = 41.5 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 88/284 (30%), Gaps = 31/284 (10%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP------EIIGQ 98
           I +R ++ + + E+ +      D       ++        V+   D  P      E+   
Sbjct: 280 ISERKAIERALAESEAEARSFMDN------MVDACAICETVYS-PDGKPIDIRLVEVNAA 332

Query: 99  LHQRIDIPQTD-TDLLSFENWLKFHHYIK-LSKATEKLRKEGQSFDLVAETQNDCAIKIE 156
           L Q +  P  +     +F+  ++    +    +  E  R            Q +    + 
Sbjct: 333 LAQELGRPAAEIAGWTAFK--IRPELTLPWFDRFLEVHRTGA-------AMQFEEPFPVV 383

Query: 157 GRVSGSCAF-LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           GR     AF +R   +  ++  + E     + L+     ++ L +     V      G I
Sbjct: 384 GRWYRIAAFPVRGGRVAVVFHNITERKQAEEALAESEDRYRSLVEKSIDAVLLSLPDGSI 443

Query: 216 LWANISYKKNTETEGIVFQKA-----IGESRKLFKEEIKKRMISSSALEK-NFCETVSTL 269
           L AN    +          +A     I ES   F    ++R  +     +  +     TL
Sbjct: 444 LAANAGASQIFGMTEEELIQAGRASLIDESDPRFTAAYEERARTGRFSGELTYRRKDGTL 503

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
             G   S        +     I  D++K   + + L    E L 
Sbjct: 504 FPGEVTSALFTDRNGAIMSTMIIRDITKRKEIEESLKIYSERLQ 547


>gi|327538030|gb|EGF24720.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1122

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 121/683 (17%), Positives = 252/683 (36%), Gaps = 88/683 (12%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +++ +      +L     + + + ++    +   D  G +++ N +    T  +    + 
Sbjct: 275 TDIRDRHRAEVELRKSERLVRTIAENSTQGLVMMDATGHVIYCNQALLDMTGFDSEEIRS 334

Query: 236 A-IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH------GNNKSYKIVRVLNSFGE 288
           A + +       + +   +S   +++   E  S   H       +  S+ +V   +   E
Sbjct: 335 APLHDLIHHHYPDGRPYPMSECPIDRALPEDFSVRAHEDLFFRKDGSSFSVVCAASPIFE 394

Query: 289 AGIAI-------DVSKEITVNDQLTHTYEILH-NLT-VAIAIFD---QNRYLQFHNRSFV 336
            G  +       D + +     +L      L  +L    IA +      + L        
Sbjct: 395 DGKPVSTVIEVRDTTVQKAHEVELKRAAARLDKSLAFAGIAAWGWDHSEQRLILDVP-LR 453

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            +W  D      + + D+      +    P   +             SS   + T  LP+
Sbjct: 454 RMWGFDDE---KDVTLDDF-----AQRITPNHRDRVVASITNAMKTFSSYREEYTIDLPS 505

Query: 397 G--QTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           G  + +  I      G G I  F  +T+ V  + +     +V+ E ++ LSE   +  P 
Sbjct: 506 GNQRWIRAIGQVVADGNGGIADFFGVTMDVTADLRRQVKARVRSELLEQLSE---LTDPH 562

Query: 454 GRIKLSNPAFRSLWKTEENRL---------------SPGTHIRNIAATC--SRYYNESDG 496
             ++L+    R  +      L               S   H+  I  T     + N+ + 
Sbjct: 563 AIMQLATQRIRKHFSASRCYLAYIRLDAQTTEVFHESHDEHLSPIVGTHQIRDFLNDHEM 622

Query: 497 WDLFAAIITSFDD----------------------------ERKSLQGTLELLSDSVLEY 528
            ++ +      DD                              K L  TL +  D    +
Sbjct: 623 REIESGKPVRIDDISQSGRSSEKVQQFADLGIAAVTQGSFEATKVLHRTLFITKDKPYRW 682

Query: 529 SIIPLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
               +     +   V    +   ++  L +       A + K++FV ++S+E+R+P+T I
Sbjct: 683 RDDEVRFLDNLTEMVYLRIERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTPMTAI 742

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+ DL++       + +  +++E I  +   LL ++NDILDL+ ++AG +++N+     
Sbjct: 743 LGYADLVRDMI---EDPQAIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNHEKFEP 799

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             L+ +V+  +  +  E  + + V   G L  +  +D +RL QI   ++ NA+ F+ KG 
Sbjct: 800 ARLIEDVRSIMEVRAKEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKFTQKG- 858

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
            V ++  R N      + + G  + ++  K +F  F            G GLGL+I +  
Sbjct: 859 WVQIRV-RFNKWLHIDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGLAISKRL 917

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
             + GG +  SS++   +T    
Sbjct: 918 TEMLGGTIIASSTEGVGSTFTVS 940



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/361 (9%), Positives = 106/361 (29%), Gaps = 59/361 (16%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGESRKLFKEEIKK 250
             F++L ++   +VW  D  G  +  + S++  T    + +   + +       +  +  
Sbjct: 20  EAFRLLAEASSRIVWIADCDGKFIEDSPSWRAFTGQTIDQLASTRWLDTVHPEDQRSVAD 79

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI--------AID-------- 294
            +  S        E       G     ++  V        I        AID        
Sbjct: 80  ALKDSRREGGVSVEFRLRRHDGAFTGVQVQGVPQRQAGGSIDCWVLMSSAIDGPGTHQSK 139

Query: 295 ------------VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
                        +++    ++  H   ++++    + + D++  L   +   +E+ ++ 
Sbjct: 140 QASLSEPAGQPKTARQSEAAEREAHLRRVINHQLGLVGVIDRDGILVEVDDRSLEIAKVA 199

Query: 343 LAFLATNP--------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              +             +  +   +R A         + +   +     S   + D    
Sbjct: 200 REDVIGKHFAEAPWWTYDPRVAARVREAM-------QRAFAGEVVRFDVSLFAYGD---- 248

Query: 395 PNGQTLHVIVTS--NPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
            +G  +  ++    N  G   ++     ++  +   E +     ++     ++ ++G+ +
Sbjct: 249 -DGVRIDFMIAPVINDEGEVEFLIPSGTDIRDRHRAEVELRKSERLVRTIAENSTQGLVM 307

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
               G +   N A   +   +   +        +      +Y +   + +    I     
Sbjct: 308 MDATGHVIYCNQALLDMTGFDSEEIRSAP----LHDLIHHHYPDGRPYPMSECPIDRALP 363

Query: 510 E 510
           E
Sbjct: 364 E 364



 Score = 38.0 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 27/240 (11%)

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           RK+G SF +V        I  +G+   +   + +       +   E      +L   +  
Sbjct: 377 RKDGSSFSVVCAAS---PIFEDGKPVST--VIEVRDTTVQKAHEVELKRAAARLDKSL-A 430

Query: 195 FKVLF----DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFKEEIK 249
           F  +     D  +  +   D     +W    +    +     F + I  + R      I 
Sbjct: 431 FAGIAAWGWDHSEQRL-ILDVPLRRMWG---FDDEKDVTLDDFAQRITPNHRDRVVASIT 486

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA------IDVSKEITVND 303
             M + S+  + +   +     GN +  + +  + + G  GIA      +DV+ ++    
Sbjct: 487 NAMKTFSSYREEYTIDLP---SGNQRWIRAIGQVVADGNGGIADFFGVTMDVTADLRRQV 543

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +     E+L  L+    + D +  +Q   +   + +     +LA    + +  E    ++
Sbjct: 544 KARVRSELLEQLSE---LTDPHAIMQLATQRIRKHFSASRCYLAYIRLDAQTTEVFHESH 600


>gi|257059046|ref|YP_003136934.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589212|gb|ACV00099.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1193

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 170/416 (40%), Gaps = 50/416 (12%)

Query: 415 MFENLTVQV----DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           + +NLT ++    ++E             +   ++G+  +         +P +  +   +
Sbjct: 537 LNQNLTEEILQRQEIEADLRESESRYHLAVSGTNDGIWDWDLRTNKVYYSPVWMKILGYK 596

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VL 526
            + L        +  T S      D       +    D + +  + +  +         +
Sbjct: 597 PDALPH------LLTTWSDNVYPDDLDRTLKDVQNHLDGKTEVYENSHRIKHRDGHYIWI 650

Query: 527 EYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           E     L N +        T  ++T    A+ AL +  E+   A+  K+ F+ ++S+E+R
Sbjct: 651 EAKGKCLRNQEGHPLRLVGTITDITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIR 710

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+GF +LL+       + +   Y+  I++S  ILL L+NDILDL+ +D+G +++N
Sbjct: 711 TPMNAILGFCELLQ---GIIDDPRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQIN 767

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           Y  I L  L+ E+ Q       +  + +   I+D    + + D  RL QI   +L NA+ 
Sbjct: 768 YEPIHLRALIEEIYQIFVEDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALK 827

Query: 701 FSSKGST-VILKAAR---DNGD---------------------FIFSVKNNGSSIPEDMC 735
           F+ +G+  + +KA +   +N +                        SV++ G  I  +  
Sbjct: 828 FTHEGAVKIAVKATKKLPENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQ 887

Query: 736 KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+ F  +      +  G GLGL+I      + GG + + S     +T     P
Sbjct: 888 DYIFDAFTQSEGQSTRKYGGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFP 943


>gi|166713559|ref|ZP_02244766.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 99/512 (19%), Positives = 196/512 (38%), Gaps = 53/512 (10%)

Query: 308 TYEILHNLTVAIAI----FDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFL 359
            +EI HN+     +    FD  + + +     N +F     +    L  +  +       
Sbjct: 2   YHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNALNVSIRD------- 54

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWM 415
                LPE    + W +    V ++    H +       +   V    V    +G    +
Sbjct: 55  ----LLPEHE--QEWFDRYGLVARTGNRIHFEMQAKALKRWYSVDAFRVGRPEQGRVAIL 108

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F ++T +  +E +            D L   V V    G ++  N A+   +  + +  +
Sbjct: 109 FMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT 168

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIP 532
                    +  S   +  D       +  S  ++R           D     +E +  P
Sbjct: 169 --------VSAWSDLLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQWRWIEMTATP 220

Query: 533 LPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYEL 580
             +A      +  +     E R +    E L +++            +K+ F+  +S+EL
Sbjct: 221 RYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHEL 280

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT I+G+++LL         +   + +  I++S+     L++D+LDL+++  G ++L
Sbjct: 281 RTPLTTILGWSELLLQRVEEGHPT--YKGLSVIASSARAQKRLISDMLDLSSMLLGKVQL 338

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              ++ L + + E   +        +  +++         + D  RL Q+   +LSNA+ 
Sbjct: 339 EVESLDLVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLLSNAIK 398

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           F+     + +   RD+G  + SV ++G  I  +    +F RF        R   G+GLGL
Sbjct: 399 FTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGL 458

Query: 759 SIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           +IV+  + +HGG V  +S       T   R+P
Sbjct: 459 AIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 490



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           GR       +  + +        E     ++L+   + F  L D L   VW  D  G + 
Sbjct: 98  GRPEQGRVAILFMDIT-------ERKRVERELAESEARFSALADGLPMPVWVLDAQGVVR 150

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKK---RMISSSALEKNFCETVSTLEH-G 272
           + N +Y +      I        S  L  +++      + +S   ++     V    H G
Sbjct: 151 FVNSAYGEFFG-LDISSGTVSAWSDLLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG 209

Query: 273 NNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYE 310
             +  ++             G AG + DV+++  +        E
Sbjct: 210 QWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 253



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 67/215 (31%), Gaps = 25/215 (11%)

Query: 241 RKLFKEEIKKRMIS-SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG-IAI---DV 295
           R L  E  ++                         + Y +        E G +AI   D+
Sbjct: 53  RDLLPEHEQEWFDRYGLVARTGNRIHFEMQAKALKRWYSVDAFRVGRPEQGRVAILFMDI 112

Query: 296 SKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           ++   V  +L  +      L   +     + D    ++F N ++ E + +D+    ++ +
Sbjct: 113 TERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDI----SSGT 168

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-- 409
                + L   +    Q       +    +       +      +GQ   + +T+ PR  
Sbjct: 169 VSAWSDLLHPDDLPTFQFELAASLQEQRGLRALVRARRH-----DGQWRWIEMTATPRYS 223

Query: 410 -----GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                 G      ++T Q ++E     L++ +   
Sbjct: 224 ADGRFIGLAGSSPDVTEQREIELAREQLLESERSA 258


>gi|89896828|ref|YP_520315.1| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51]
 gi|89336276|dbj|BAE85871.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 560

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 141/287 (49%), Gaps = 7/287 (2%)

Query: 510 ERKSLQGTLELLSDSV--LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           E K L   ++ ++D +  L  ++      +T    +   D    +  L   N  L + + 
Sbjct: 262 EIKELAQHIQEMADQLKDLYQNLEAKVEKRTHQLKLVNEDLRIKQDELEAANIKLNEINT 321

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+ELR+PLT+++ FTDLL       L  +  Q ++YI A+S  LL L+N+I
Sbjct: 322 YKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQE-RQNLKYIKANSQNLLKLINNI 380

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDLA ++AG ++L    + + D++  +   IA    +  I  ++  D ++    AD ++L
Sbjct: 381 LDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGINWEISLDPEVSLLRADPEKL 440

Query: 688 LQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
            ++   ++ NA+ F+     V ++   A  +   +  V + G  IP +  + +F RF   
Sbjct: 441 RRVIENLVGNAIKFTPPEGRVEIQVKNAPRDNWLMIRVIDTGIGIPPEEQEEIFERFTQI 500

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +++  +  G GLGL++ +  + LH G + + S     +T    +P 
Sbjct: 501 DSSNSRKYGGTGLGLALAKELVTLHKGELWVESELNKGSTFVVLLPK 547


>gi|83955167|ref|ZP_00963823.1| probable sensor/response regulator hybrid protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83840496|gb|EAP79669.1| probable sensor/response regulator hybrid protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 1064

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 128/663 (19%), Positives = 245/663 (36%), Gaps = 62/663 (9%)

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETT-LKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           I G    +   + + ++      LAE   L+ +++S      + + ++    ++  D+  
Sbjct: 297 IAGIALTAMLIVVLRAIRQRGDSLAEVAALREQQISAREEENRSIIENSVVGIFILDERR 356

Query: 214 DILWANIS----YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-- 267
           +IL+AN +    + K+ +  G +              E       +          +   
Sbjct: 357 EILFANHAALEIFDKHEDGMGGLPLTKFVTEAGWLPAEAGYNATGTKQDGSTLHLDLHYN 416

Query: 268 --TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA--IAIFD 323
                +G  +   IVR            DVS E+    +L    E   +      I +F+
Sbjct: 417 EWETLNGVKRITAIVR------------DVSVEVGAVGELAGIKERYDHALAGSEIGVFE 464

Query: 324 QNRY--LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA---NKLPEQLNWKTWK-EN 377
            +        + ++ ++ ++         + +E L  +        +    +  T K E 
Sbjct: 465 IDLMSGTSVVSPTWRKIMDVGPE---VEDTQEEFLSRIHPDDLPRLIEADQDCITGKAER 521

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVK 434
             + Y+        W   +     V+V     G     +    ++T             K
Sbjct: 522 SRTEYRMQFGESWRWMRSD----AVVVDRADDGSAIRMVGTQSDITALRHARNALEASEK 577

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                +D    G+A    +G+    N A   L    +  ++   ++  I           
Sbjct: 578 RFRTVLDAAPVGMATLNSNGQFTSVNNAMCELTGYSQKVMTDRFNLAQIIP--------E 629

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           +   L   I+T F +      G+ E+      E+ I+     Q    F       + E A
Sbjct: 630 EDVKLMRDIVTRFTE-----SGSNEVYRG---EHPILHKDGGQRWGLFNITWTFDKNEGA 681

Query: 555 LTEKNE-----ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                +       +K DEIKN FV  VS+ELR+PLT+I G   L++ S   ++ +   + 
Sbjct: 682 YVFIAQVNDITDQKKIDEIKNEFVSTVSHELRTPLTSIKGALGLIEMSARDTMPASALRL 741

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E    ++  L  +VNDILDL  + +G +  + S + LN++++   Q +      +N ++
Sbjct: 742 IEIARNNADRLTTIVNDILDLEKISSGKIDFDLSPMSLNEVISSAVQEMMPFAVTHNTKL 801

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +       +  AD  R++Q+ + ++SNA  +SS+G+ V +KA       I  V+N G  
Sbjct: 802 VMDLPDTDINVAADWSRMMQVLANLMSNACKYSSEGTDVTIKAETIGDMAIVYVQNFGPG 861

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +PE+    +F  F        R   G GLGL+I    +   GG++   S   G T     
Sbjct: 862 VPENFKNRIFQAFSQADGSDTRAKGGTGLGLNITRQIVWRQGGNIGFESKPSGTTIFWFT 921

Query: 788 IPS 790
            P 
Sbjct: 922 CPL 924



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/453 (14%), Positives = 130/453 (28%), Gaps = 73/453 (16%)

Query: 18  TLFSCKIAVFGTIAGMLLTTIIPIIL-LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLL 76
            LF     +   IAG+ LT ++ ++L  IRQR     +V        +I  +  +  S++
Sbjct: 285 ALFPGGTPLLALIAGIALTAMLIVVLRAIRQRGDSLAEVAALRE--QQISAREEENRSII 342

Query: 77  T--------ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLS 128
                     +    I++                  +P   T  ++   WL         
Sbjct: 343 ENSVVGIFILDERREILFANHAALEIFDKHEDGMGGLP--LTKFVTEAGWLPAEAG---- 396

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD-GIYSELAETTLKCKK 187
                 +++G +  L         +    R++   A +R +S++ G   ELA    +   
Sbjct: 397 YNATGTKQDGSTLHLDLHYNEWETLNGVKRIT---AIVRDVSVEVGAVGELAGIKERYDH 453

Query: 188 LSN-------HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                      I +      S+    W +                 E     F   I   
Sbjct: 454 ALAGSEIGVFEIDLMSGT--SVVSPTWRKIMDVGP---------EVEDTQEEFLSRIHPD 502

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI------- 293
                 E  +  I+  A        +   E    +  +   V+    + G AI       
Sbjct: 503 DLPRLIEADQDCITGKAERSRTEYRMQFGESW--RWMRSDAVVVDRADDGSAIRMVGTQS 560

Query: 294 DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D++      + L         +L    V +A  + N      N +  EL       +   
Sbjct: 561 DITALRHARNALEASEKRFRTVLDAAPVGMATLNSNGQFTSVNNAMCELTGYSQKVMT-- 618

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----NGQTLHVIVT 405
                  +    A  +PE+ + K  ++ +    +S          P    +G     +  
Sbjct: 619 -------DRFNLAQIIPEE-DVKLMRDIVTRFTESGSNEVYRGEHPILHKDGGQRWGLFN 670

Query: 406 SNP-----RGGTIWMFE--NLTVQVDLETKYNT 431
                    G  +++ +  ++T Q  ++   N 
Sbjct: 671 ITWTFDKNEGAYVFIAQVNDITDQKKIDEIKNE 703


>gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035545|gb|ABF62403.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 756

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 87/384 (22%), Positives = 160/384 (41%), Gaps = 24/384 (6%)

Query: 422 QVDLETKYNTLVKVQGET------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           +  LE  Y  L   + E        +H ++GV + G DG ++ +N  F  L     + L 
Sbjct: 225 RQALEDAYMRLFDQKQEARRLAMIAEHANDGVMLIGRDGIVRWANDGFSRLTGYTFDELV 284

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                +N     +    +     +  A     +  R  L    +   +  +E + +P+ +
Sbjct: 285 G----QNPGKILNSENTDPAALRVIEAGREKGEPFRAELINRRKDGKEIWIETNQVPVFD 340

Query: 536 AQTMLTFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               +      +         ER L E   A  +   IK  F+  +S+E R+P+  +IG 
Sbjct: 341 DTGQIETYIAVERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGM 400

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             +L+ +    L+  Q  Y + I  SS  LL L+ND+LDL+ ++A  + L      L+  
Sbjct: 401 AQMLQAT---DLSEDQRLYTDTILGSSRALLALINDVLDLSHMNAAGVSLFNVDFDLHAC 457

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-V 708
           + ++ + ++ +  E ++ + V  D  +  +V  D +RL QI   +L NA+ F++ GS  +
Sbjct: 458 VGDIVRLLSGQADEKHLELSVEIDPDVPVWVTGDDRRLRQILVNLLGNAVKFTTSGSIFI 517

Query: 709 ILKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
            L+             V++ G  IP D  + +F RF    +    +  G GLGLSI    
Sbjct: 518 RLRGVVTGDQVALKIEVEDTGIGIPADKLEKIFERFSQADNAISRKYGGSGLGLSISRGL 577

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
               GG + ++S +         +
Sbjct: 578 AQAMGGDIDVTSVEGEGACFTLML 601



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 45/160 (28%), Gaps = 24/160 (15%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               +      I  +    + +  ++  +++ N  F  L            + DEL+   
Sbjct: 237 DQKQEARRLAMIAEHANDGVMLIGRDGIVRWANDGFSRLTGY---------TFDELVGQN 287

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNP---RGGTIWM 415
                  E  +    +       K      +      +G+ + +     P     G I  
Sbjct: 288 PGKILNSENTDPAALRVIEAGREKGEPFRAELINRRKDGKEIWIETNQVPVFDDTGQIET 347

Query: 416 F----ENLTVQVDLETKYNTL-------VKVQGETIDHLS 444
           +     ++T   + E +            +++ E +  +S
Sbjct: 348 YIAVERDVTATKEYERQLKEARLAAEEGARIKEEFLATMS 387


>gi|251794485|ref|YP_003009216.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247542111|gb|ACS99129.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 1267

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/521 (17%), Positives = 207/521 (39%), Gaps = 49/521 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE- 357
             + D       I++    +  + D+N  + + N++  +L       L  + +    ++ 
Sbjct: 336 EHLKDMFGRLEAIINQNEYSFILLDENYRVSYMNQAAEKLIGYTTDELKGHATPLLFMDP 395

Query: 358 --FLRSANKLPEQLNWKTWKE-NIFSVYKS-SETHKDTWHL--PNGQTLHVIVTSNPRG- 410
               R A +L ++L         +F + +    +++  W     +G  + V   SN    
Sbjct: 396 DEIEREAERLSQKLGEHVEPGLEVFRMLRQVDFSYERQWTYVHKDGTKIPVRHFSNGLRD 455

Query: 411 ------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G + M  +++  V +E   N L+    + I    + +A    +G++   N A +
Sbjct: 456 QQGRLTGVLGMAYDISEHVKVEKSRNLLL----DIIGSAKDLIASIDHNGKVAYINKAGK 511

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            +     +                + Y E   + L+    +    +    +G  ELL+ +
Sbjct: 512 RMLGLPLDYKPKDY----------KSYVEPSMY-LYLIKGSRIAMKMGYWEGEAELLTQA 560

Query: 525 VLEYSII------PLPNAQTMLTFV---NVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             + ++       P  N   +       ++T+    +  L +  +   +A+  K+ F+  
Sbjct: 561 GDKVNVSLVIVAHPYRNTGELYFSCIARDITEQKHIQEELIQATQEAEQANAAKSRFLAM 620

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+E+R+PL  IIG + L++ +    L+  Q  Y++ +  SS  LL ++ND+LD + ++A
Sbjct: 621 VSHEIRTPLNGIIGLSQLMRRT---GLSPSQKDYMDKLGNSSESLLRIINDLLDFSKIEA 677

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLGS-FVADRQRLLQIFSK 693
           G +++        ++L+ +   ++  M         +    +L +  + D+ R+ QI   
Sbjct: 678 GKVEVERVAFQPQEMLSRLTDQLSVFMGGKEQFEFILEVPEQLPTTLLGDQMRVEQILLN 737

Query: 694 ILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +  NA+ F+ +G       +++   D     F+V++ G  + +     +F  F       
Sbjct: 738 LCMNAVKFTERGHVKLALEVMEQCSDGLKLQFTVEDTGIGMTKKQIDKLFTPFTQADGST 797

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            R   G GLGL I    + + GG + + S     +  +  +
Sbjct: 798 TRKYGGTGLGLVIANGLVKMMGGKIQVDSEPGLGSRFSFVL 838


>gi|281412573|ref|YP_003346652.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
 gi|281373676|gb|ADA67238.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
          Length = 412

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 168/389 (43%), Gaps = 33/389 (8%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +++FE L   VD   +  + V+V  +     ++ LSE + +   +G+I   N   R L +
Sbjct: 46  LYLFERLKKYVDNLKETISRVEVSRDNFLTILNSLSEPIFILDREGKITFLNEIARELVQ 105

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              N      +           + +    ++    I S + +  +L  T           
Sbjct: 106 GRINPEGRPYY---------EIFEDYYINEMVEETIKSEEPQEGTLV-TYVGNEKKYFHV 155

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +IP+        FV +   V  ER L          DE++  F+  VS+ELR+PLT+I 
Sbjct: 156 KVIPVELKSGDKIFVILFHDVTKERKL----------DEMRREFIATVSHELRTPLTSIH 205

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ + L    L +      ++++ I   S  +  L+ND+LDL  ++   +      + L 
Sbjct: 206 GYAETLLEDDLEN-KELVKRFLKIIEEESARMTRLINDLLDLEKMEESEVNFEMKDVDLC 264

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS---SKG 705
           +++  V + I     EN + + V  +  +     +++RL+Q+   ++ NA+ ++    KG
Sbjct: 265 EVVEYVYKIIQPIAEENEVDLIVECEDVV--VKGNKERLIQMLLNLVDNAVKYTSLKEKG 322

Query: 706 ST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
              V ++A       +  V++ G  IP++    +F +F         +  G GLGL+IV+
Sbjct: 323 EKKVWVRAYDTPDWVVVEVEDTGPGIPKESQSRIFEKFYRVDKARSRKMGGTGLGLTIVK 382

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + ++ HGG + + S     T +   +P +
Sbjct: 383 TIVDKHGGKIEVESEINQGTVMRVFLPKR 411



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +S+     D       IL++L+  I I D+   + F N    EL  +            E
Sbjct: 63  ISRVEVSRDNF---LTILNSLSEPIFILDREGKITFLNEIAREL--VQGRINPEGRPYYE 117

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + E       + E +  +  +E     Y  +E  K  +H+   + + V + S      + 
Sbjct: 118 IFEDYYINEMVEETIKSEEPQEGTLVTYVGNE--KKYFHV---KVIPVELKS-GDKIFVI 171

Query: 415 MFENLTVQVDLETKYNTLVKV 435
           +F ++T +  L+      +  
Sbjct: 172 LFHDVTKERKLDEMRREFIAT 192


>gi|124267680|ref|YP_001021684.1| signal transduction histidine kinase-like protein [Methylibium
            petroleiphilum PM1]
 gi|124260455|gb|ABM95449.1| signal transduction histidine kinase-like protein [Methylibium
            petroleiphilum PM1]
          Length = 1317

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 136/780 (17%), Positives = 281/780 (36%), Gaps = 68/780 (8%)

Query: 56   NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
                + L E+ +Q ++  ++L     L  V D +    E   + H  +  P  +     F
Sbjct: 411  RRRRTEL-ELAEQQARLGAVLRSLPDLWFVIDAEGRHVECSDERHPSLFRPFEELRGKHF 469

Query: 116  ENWLKFHHYIKLSKA-TEKLRKEGQSFDLVAE--TQNDCA--IKIEGRVSGSCAFLRI-L 169
                       L+     +  + G+   +  E  T +      +      G    L +  
Sbjct: 470  AE-AVPEPLASLAMRSIAEALRSGEVQRIEYELPTLDGRVRNFEARISPMGGDRVLYLTR 528

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
             L  +        L  + L    ++  V+ D+             +++AN ++++ +   
Sbjct: 529  DLTELRHLERNVQLMQRALEAEAALPMVVADATQ-------PDLPLIYANTAFERLS--- 578

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--------YKIVR 281
            G+   + IG + +  +   + +   +   E    E   ++   N ++          +  
Sbjct: 579  GLPLDQVIGRNCRFLQAGDRDQPGLTRLREALAAERACSVTLRNQRADGTSFINELHVAP 638

Query: 282  VLNSFG----EAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNR 333
            V ++ G      G+  DV++      QL  +  +  +    +T  + +   +R +   N 
Sbjct: 639  VRDTLGRVTHYVGVQHDVTERSRAERQLALSETLYRSVAASITDGLLVIGPDRRIVTANP 698

Query: 334  SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            S   L       L        L   L   +  P + +    +E + S  +S+        
Sbjct: 699  SACTLLGARATTLTGQ-RLGRLGYKLLEEDGRPVEHDRHPVREVLLS-GRSALDRVHRLR 756

Query: 394  LPNG--QTLHVIVTS---NPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             P+G  + L + V     +P       +  F ++T Q   E +           ++   +
Sbjct: 757  RPDGSERLLRLNVQPLRAHPDDSRLSCVVTFRDITAQRGAEAELAQAEARWKFALEGAGD 816

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            G+  +  D ++   +P ++++    +        I       SR  +  D   +  AI  
Sbjct: 817  GIWDYDEDTQLVFYSPRWKAMLGYRD------DEIGTSTREWSRRIHPDDRPGVIDAIRR 870

Query: 506  SFDDERKSLQGTLELL-----------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                E    +    L               ++E      P  + + T  +VT    AE+A
Sbjct: 871  YRAGEITEYRTEHRLRHKDGHWIWVYERGKIVERRADGSP-RRIVGTHTDVTRQKMAEQA 929

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +     A   A + K++F+  +S+E+R+PL  +IGF  LL+        ++ +Q+ ++I 
Sbjct: 930  MR-DKAAAELASQAKSAFLSRMSHEMRTPLNAVIGFAQLLRKDD-APGGARVAQFGDHIL 987

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +   LL LVND+LDL  V+ G + +   ++ L   ++   + I  +  +  + +  + +
Sbjct: 988  QAGEHLLALVNDVLDLQQVEEGRLSIRLESLPLRAAVDAALELIRPQAAQRRVTVCNLIE 1047

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPE 732
              L S  AD QRL Q+   +LSN + ++ +G  +   A  D         +++ G  +  
Sbjct: 1048 PDL-SVQADPQRLRQVLLNLLSNGVKYNREGGELHCSAVLDGTTPCCTLLIEDQGFGLEA 1106

Query: 733  DMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            D    +F  F           G GLGL I         G +S+SS     T     +P +
Sbjct: 1107 DDLARLFQPFERLGRETSAIEGTGLGLVISRRLAEEMNGRLSLSSRPGHGTLARLELPLQ 1166



 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 153/477 (32%), Gaps = 49/477 (10%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSC-------------AF 165
           ++     +  +  +     G              ++++G+  G+              A 
Sbjct: 87  MEIVDAQRDERFADNPLVVGAP---RLRAYAAVPVQVDGQRIGTVCAIDARPGRLPPDAL 143

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
             +  L  + S L +  L+ ++     S  +    +    +W  D+ G I W + S + +
Sbjct: 144 ATLRDLATLTSALLQARLQEQRSRLQESRVRAASRAGSDWLWETDEHGTISWVSDSVEAH 203

Query: 226 TET----EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY---- 277
           T      E   F + +  +R        + ++++ A ++ F   V+  +  +        
Sbjct: 204 TGHPPSHEVGQFGQGMHRARDDEHRASWEALVAARAQQRPFRNAVADRDAAHGTITISTS 263

Query: 278 --KIVRVLNSF-GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
              +      F G  G A ++++E+    Q   T  +L      +A    + D    +  
Sbjct: 264 GDPVFDATGQFKGYRGAARNITEELNRRTQEQRTQALLQAAIEGVAAGVMVSDPRGRIVL 323

Query: 331 HNRSFVELWEIDLA-FLATNPSN-DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            N +    W   +  FL   PS+  +L+  L  A   P+     T +E  F+ ++   T 
Sbjct: 324 SNTA----WRTGMQRFLPEWPSHWPDLVHALLRAGAYPD----ATGREAEFAAWRLGLTT 375

Query: 389 KDTWH---LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            +          Q + V       G  I +  ++T +   E +        G  +  L +
Sbjct: 376 AEGRQHELRFGQQHVLVTDQLLADGSVIHLSIDITRRRRTELELAEQQARLGAVLRSLPD 435

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
              V   +GR    +             L        +    +     S    L +  + 
Sbjct: 436 LWFVIDAEGRHVECSDERHPSLFRPFEELRGKHFAEAVPEPLASLAMRSIAEALRSGEVQ 495

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             + E  +L G +        E  I P+   + +    ++T+    ER +     AL
Sbjct: 496 RIEYELPTLDGRV-----RNFEARISPMGGDRVLYLTRDLTELRHLERNVQLMQRAL 547



 Score = 54.2 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 121/347 (34%), Gaps = 39/347 (11%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNN-KSYKIVRVLNSFGEAGI--AIDVSKEITVNDQLT 306
             M    A           +      ++Y  V V       G   AID        D L 
Sbjct: 85  DAMEIVDAQRDERFADNPLVVGAPRLRAYAAVPVQVDGQRIGTVCAIDARPGRLPPDALA 144

Query: 307 HTYEILHNLTVAI--AIFDQNR------YLQFHNRSFVE-LWEIDL----AFLAT----- 348
              + L  LT A+  A   + R       ++  +R+  + LWE D     ++++      
Sbjct: 145 TLRD-LATLTSALLQARLQEQRSRLQESRVRAASRAGSDWLWETDEHGTISWVSDSVEAH 203

Query: 349 --NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIV 404
             +P + E+ +F +  ++  +  +  +W E + +        ++     +    T+ +  
Sbjct: 204 TGHPPSHEVGQFGQGMHRARDDEHRASW-EALVAARAQQRPFRNAVADRDAAHGTITIST 262

Query: 405 TSNPRGGTIWMF-------ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           + +P       F        N+T +++  T+      +    I+ ++ GV V  P GRI 
Sbjct: 263 SGDPVFDATGQFKGYRGAARNITEELNRRTQEQRTQALLQAAIEGVAAGVMVSDPRGRIV 322

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQ 515
           LSN A+R     +       +H  ++     R   Y ++ G +   A         +  Q
Sbjct: 323 LSNTAWR--TGMQRFLPEWPSHWPDLVHALLRAGAYPDATGREAEFAAWRLGLTTAEGRQ 380

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             L      VL  +   L +   +   +++T   R E  L E+   L
Sbjct: 381 HELRFGQQHVL-VTDQLLADGSVIHLSIDITRRRRTELELAEQQARL 426


>gi|219667341|ref|YP_002457776.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537601|gb|ACL19340.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 560

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 141/287 (49%), Gaps = 7/287 (2%)

Query: 510 ERKSLQGTLELLSDSV--LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           E K L   ++ ++D +  L  ++      +T    +   D    +  L   N  L + + 
Sbjct: 262 EIKELAQHIQEMADQLKDLYQNLEAKVEKRTHQLKLVNEDLRIKQDELEAANIKLNEINT 321

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+ELR+PLT+++ FTDLL       L  +  Q ++YI A+S  LL L+N+I
Sbjct: 322 YKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQE-RQNLKYIKANSQNLLKLINNI 380

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDLA ++AG ++L    + + D++  +   IA    +  I  ++  D ++    AD ++L
Sbjct: 381 LDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGITWEISLDPEVSLLRADPEKL 440

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
            ++   ++ NA+ F+     V ++      +   +  V + G  IP +  + +F RF   
Sbjct: 441 RRVIENLVGNAIKFTPAEGRVEIEVKNGPRDNWLMIRVIDTGIGIPPEEQEEIFERFTQI 500

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +++  +  G GLGL++ +  ++LH G + + S     +T    +P 
Sbjct: 501 DSSNSRKYGGTGLGLALAKELVSLHKGELWVESELNKGSTFVVLLPK 547


>gi|307265090|ref|ZP_07546650.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390846|ref|ZP_08212398.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306919888|gb|EFN50102.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993105|gb|EGD51545.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 470

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 126/274 (45%), Gaps = 2/274 (0%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + L +  L    +   N    +      +     ++     + L + ++++  FV +VS+
Sbjct: 198 QPLKEMSLAVQQVAKGNFSARVQHKEEDEIGDLAKSFNVMAKELEQLEDMRKDFVANVSH 257

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELRSPLT+I G+ D +    +     K   Y++ +   +  +  L+ND L++  +++G  
Sbjct: 258 ELRSPLTSIQGYIDGILDGTIPK--EKACDYLKIVQKETRRMSRLINDFLEMTKLESGQF 315

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            LN +   +N+L+         ++ E ++ +KV  +      +AD+ ++ Q+ + ++ NA
Sbjct: 316 PLNKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIADKDKIEQVLTNLIDNA 375

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + FS +   + +     +     ++K+NG  I  +  + +++RF        + G GLGL
Sbjct: 376 IKFSKEKGIIHIFTEIKDDKAFITIKDNGIGISPEDQEHIWDRFYKADKSRGKDGAGLGL 435

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            IV+  IN H   + + S     T     +P K+
Sbjct: 436 YIVKRIINAHNEEIWVESELGKGTAFTFTLPMKK 469


>gi|253571812|ref|ZP_04849217.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838409|gb|EES66495.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 599

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 111/539 (20%), Positives = 222/539 (41%), Gaps = 46/539 (8%)

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
            GN K Y I    +    A      S    + +     + I  NL V I +++++ YL  
Sbjct: 85  EGNTKIYGIAETQDGPHMA------SAYQALQNSERILHNIYKNLPVGIELYNKDGYL-- 136

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-KENIFSVYKSSETHK 389
                ++L + +L           +   +     LPE++  K    E +   ++   +  
Sbjct: 137 -----LDLNKKELEMFHITHKEKVIGINIFENPALPEEIKLKIRDNEEVEFTFQYDFSKI 191

Query: 390 DTWHLPNGQTLHVIVTS-------NPRGGTIWMFENLTVQVDLETKYNTLVKV---QGET 439
             ++     +  + +T+       + R    ++  N+  + +    YN + +        
Sbjct: 192 KGYYESEKTSGFINLTTRITTLYDHDRQPINYLLINV-DKTENTIAYNKIQEFKNFFELV 250

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD--GW 497
            D+   G A F       LS   +      +      GT +  I    S ++ E      
Sbjct: 251 GDYAKVGYAHFDA-----LSRNGYALSSWYKNVGEEEGTPLPEIIGIHSHFHPEDRAVML 305

Query: 498 DLFAAIITS------FDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVR 550
           D  A ++         D   +   G+      +VL  +  P  N  + +    ++T    
Sbjct: 306 DFLAKVVKGESTKLCRDVRIRRADGSYTWTRVNVLVRNYRPQDNVIEMLCINFDITQLKE 365

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+ L +  E   +AD +K++F+ ++S+E+R+PL  I+GF+ +L+         ++ QY+
Sbjct: 366 TEQMLIKAKEKAEEADCLKSAFLANMSHEIRTPLNAIVGFSSMLEE---AEDQEEKHQYI 422

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  ++ +LL L++DILDL+ ++A    +    +    L N++ Q+I  K     + ++
Sbjct: 423 TIIEDNNKLLLQLISDILDLSKIEAETFDIIPERVNAKQLCNDLFQAIQMKTSP-QVELR 481

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +  +    +F +D+ RL Q+    ++NA+ F+S+G  + +    D  +  FSV++ G  I
Sbjct: 482 LKDNLPELTFTSDKNRLYQVLLNFVTNALKFTSEG-NITIDYQIDGNEVKFSVQDTGMGI 540

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +  +++F RFV         G GLGLSI +S +   GG + + S     +      P
Sbjct: 541 EPEKQEAIFTRFVKLNSF--IPGTGLGLSICQSIVTQLGGKIGVESEPGKGSCFWFTHP 597


>gi|297529109|ref|YP_003670384.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252361|gb|ADI25807.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 582

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 145/369 (39%), Gaps = 22/369 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++              I+++  G+      G I L N AF++ +  + +      +    
Sbjct: 231 EMSRAREIQTDRLHTLIENVGSGLLFIDHRGHISLINRAFQTQFHLDPSDCLHRPY---- 286

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               +      D       I  +    R+ ++ T+ +      +    P+         +
Sbjct: 287 ----ADVLPHGDIVRFIDDIFITETTMRRHMRLTIGIERKH-FDVYGAPIIGTNAEWKGI 341

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V      E         L++ ++I+  FV +VS+EL++P+T+I GF + L    +    
Sbjct: 342 VVVFHDITE---------LKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAMKD-E 391

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +    ++  I   S  L  LV ++LDL+ ++    +L    + +  ++ E       K  
Sbjct: 392 AALEHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAA 451

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I + + S   L     DR R+ QI   +L+NA+ ++ +   V ++A     + +  V
Sbjct: 452 EKQIDLHIESPSGL-VIRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEEREKEVLIHV 510

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I E     +F RF            G GLGL+IV+  +  H G+++++S     
Sbjct: 511 KDTGIGIEEKEIPRIFERFYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRG 570

Query: 782 TTINCRIPS 790
           T      P 
Sbjct: 571 TVFTIHFPK 579



 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A  + +     + Q    + ++ N+   +   D   ++   NR+F   + +D +     
Sbjct: 225 LARHLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHISLINRAFQTQFHLDPSDCLHR 284

Query: 350 P-----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           P      + +++ F+             T + ++         H D +  P      +I 
Sbjct: 285 PYADVLPHGDIVRFIDDIFITE-----TTMRRHMRLTIGIERKHFDVYGAP------IIG 333

Query: 405 TSNPRGGTIWMFENLTVQVDLET 427
           T+    G + +F ++T    LE 
Sbjct: 334 TNAEWKGIVVVFHDITELKRLEQ 356


>gi|160885058|ref|ZP_02066061.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
 gi|156109408|gb|EDO11153.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
          Length = 570

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 163/375 (43%), Gaps = 16/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +ET      +   + +D+++  + V   D  ++  +N  FR              
Sbjct: 202 TKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPENAECWR 261

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +        ++  +    D                      ++        + +     
Sbjct: 262 MLNAGLENGCKHCPKPKLLDANRKFT------GVHFWEDYNPVTKRWYTIQSMAIKWLDG 315

Query: 539 MLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 316 RWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL 375

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L   +  Y+  +  ++ +LLNL++DILD++ ++AG++ L    + +  L  EV
Sbjct: 376 AETDEAEL---RYVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREV 432

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + + K  +  + ++   +       AD+ R++Q+ S  L+NA+ F++KGS  +  +  
Sbjct: 433 IATFSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLE 492

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D     F V + G  IP++    +FNRFV      Q  G GLGLSI +S +N  GG + +
Sbjct: 493 DESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ--GAGLGLSICQSLVNRMGGKIGV 550

Query: 775 SSSDEGVTTINCRIP 789
            S +   +      P
Sbjct: 551 ESREGEGSCFWFTHP 565


>gi|18310298|ref|NP_562232.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|18144978|dbj|BAB81022.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 821

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 166/381 (43%), Gaps = 9/381 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    ++T +  +E       +      +++ + +     +G+I   N A   +    E 
Sbjct: 412 VLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEE 471

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L    +   +    +    +S  ++    +       +K L   LE +S  + +     
Sbjct: 472 ELIGKNYYDLLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQ-LESISSRIKDNK--- 527

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N    +      + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     
Sbjct: 528 -NNTLGWVRVARNIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQ 586

Query: 593 LLKTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           LL TSK    N  +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L
Sbjct: 587 LLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKL 646

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             ++  S+   +   NI I   +D +      D  ++ +I   +LSNA+ F+  G  + +
Sbjct: 647 TEDITMSVIPYVESKNIDIIFDTDYEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEV 706

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
               D       VK+ G  IP  M + +F RF+ N       + G G+GLS+V+S + LH
Sbjct: 707 SIFADEAWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELH 766

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G V +  S+E  +  +  +P
Sbjct: 767 EGKVFLRESNESGSEFSILLP 787


>gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 765

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 154/375 (41%), Gaps = 21/375 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGV--AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           D E +  TL       ID++S  V    +  + R+   +     L     + L       
Sbjct: 246 DKEAQLRTL-------IDNVSGAVYQLKWQGNWRLAFMSEHLEELAGYPSSYLDGNFRFV 298

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTM 539
           N+          +   +   A  + +  E + +   G    + D V              
Sbjct: 299 NLIHPDDVGVLRALMQETTKARGSGYQLEYRIIHADGEERWVLDRVRLVYDDSGRPLHAD 358

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              V+VT+  +    L E  EA   A  +K+ F+  +S+E+R+PL  +IG   LL  ++ 
Sbjct: 359 GILVDVTERHQQSELLREAKEAAEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTE- 417

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+ +Q +Y E I  S  +LL L+NDILD + ++AG M+L      L  L+ E    +A
Sbjct: 418 --LSDEQREYAETIDVSGNLLLALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVA 475

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG 717
            +  E N+ +   ++  +    + D QR+ Q+   ++ NA+ F+  GS  + ++     G
Sbjct: 476 PRAREKNLSLDWQAEAAVPRRVIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREG 535

Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           D      +V + G  I       +F  F        R   G GLGL+I +  ++  GG V
Sbjct: 536 DALLLEVAVADTGIGISPGEMMRIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTV 595

Query: 773 SISSSDEGVTTINCR 787
            + S     +T +  
Sbjct: 596 VVKSQPGRGSTFSFT 610


>gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp.
           m3-13]
          Length = 594

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 178/423 (42%), Gaps = 40/423 (9%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKV 435
            I +  ++              T   I+TS+  G     F  +  Q+       N   + 
Sbjct: 197 RITAPLRNMREAAFEVARGKFDTKVPILTSDEIGELGMAFNQMGRQLKFNINALNQEKEH 256

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV     DG I ++NP      +    +                    + 
Sbjct: 257 LANILSSMADGVITLNRDGTILVTNPPAEKFLQAWYYQ-----------------EGNAS 299

Query: 496 GWDLFAAIITSFD-----DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           G DL   ++  F      ++ +S++ T +  +  ++   + PL     +   V V   + 
Sbjct: 300 GEDLPGEVVEMFQRAVSVEKEQSIELTYQGRTWVIV---MSPLYTQTHIRGAVAVIRDMT 356

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ER L          D+++  F+ +VS+ELR+P++ + G+++ +     G+ + ++ +  
Sbjct: 357 EERRL----------DKLRKDFIANVSHELRTPISMLQGYSEAIVDDIAGT-DEEKKELA 405

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I   S  +  LVND+LDLA ++AG + LNY    +   + ++ +       E +I ++
Sbjct: 406 SVIYDESLRMGRLVNDLLDLARMEAGHISLNYENANIVAFVEKITRKFQGLAKEKSIVLQ 465

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
              +G  G    D  R+ Q+ + ++ NA+  ++   T+ + A   N      VK++G  I
Sbjct: 466 SRVEGD-GVIQMDVDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNGVKIDVKDSGHGI 524

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE+    VF RF        R   G GLGL+IV++ I  H G +S+ S +   TT +  I
Sbjct: 525 PEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIIEAHRGTISVHSKENEGTTFSMYI 584

Query: 789 PSK 791
           P K
Sbjct: 585 PQK 587


>gi|239907548|ref|YP_002954289.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797414|dbj|BAH76403.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 867

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 171/392 (43%), Gaps = 37/392 (9%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++ +   E       +   +  D++ + VAV  +  + ++   N A   ++  ++N  + 
Sbjct: 340 ISDRKRAEDAVKLSEERFKKLFDNV-DSVAVQGYDRNRKVIYWNNASEKIYGYKQNE-AI 397

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-QGTLELLSDSVLEYSIIPLPN 535
           G H+ ++        +           I  + +E K +  G L L+     + + +P+ +
Sbjct: 398 GVHLEDLIIPPDMRLH-------VVEAIRQYAEEGKPIPAGELHLMRK---DGTSVPVYS 447

Query: 536 AQTMLT-----------FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +  M T            V++T+     + L    +    +   K+ F+ ++S+E+R+PL
Sbjct: 448 SHVMQTTSKGDIELFCLDVDLTELDVVRKELISAKDKAEASSMAKSEFLANMSHEIRTPL 507

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G   LL+T+   +++ +Q +Y+     SS  L  L++DILDL+ +++    ++   
Sbjct: 508 NGILGMLQLLETT---TISDEQKEYLLGAIKSSKRLTRLLSDILDLSKIESKRTTIDQVE 564

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
             + +++  V ++ +  + EN +  + + D  +    + D  R+ QI   I+ NA+ F+ 
Sbjct: 565 FDIEEVVRSVSEAFSISIKENGLSFRTVLDNNIPRRLIGDETRMRQILFNIVGNAIKFTP 624

Query: 704 KGST-VILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
            G   V L     + +     + SV + G  IP D  K +   F          ++G GL
Sbjct: 625 TGKIEVELSLLSHHTNKSCRVLVSVADTGIGIPADRLKDILEPFTQVDGSYIRSKQGAGL 684

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+IV   + L GG++ I S     TT     
Sbjct: 685 GLAIVRKLVALLGGNICIDSELGAGTTFYVVF 716


>gi|218245995|ref|YP_002371366.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166473|gb|ACK65210.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1193

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 170/416 (40%), Gaps = 50/416 (12%)

Query: 415 MFENLTVQV----DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           + +NLT ++    ++E             +   ++G+  +         +P +  +   +
Sbjct: 537 LNQNLTEEILQRQEIEADLRESESRYHLAVSGTNDGIWDWDLRTNKVYYSPVWMKILGYK 596

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VL 526
            + L        +  T S      D       +    D + +  + +  +         +
Sbjct: 597 PDALPH------LLTTWSDNVYPDDLDRTLKDVQNHLDGKTEVYENSHRIKHRDGHYIWI 650

Query: 527 EYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           E     L N +        T  ++T    A+ AL +  E+   A+  K+ F+ ++S+E+R
Sbjct: 651 EAKGKCLRNQEGHPLRLVGTITDITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIR 710

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+GF +LL+       + +   Y+  I++S  ILL L+NDILDL+ +D+G +++N
Sbjct: 711 TPMNAILGFCELLQ---GIIDDPRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQIN 767

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           Y  I L  L+ E+ Q       +  + +   I+D    + + D  RL QI   +L NA+ 
Sbjct: 768 YEPIHLRALIEEIYQIFVEDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALK 827

Query: 701 FSSKGST-VILKAAR---DNGD---------------------FIFSVKNNGSSIPEDMC 735
           F+ +G+  + +KA +   +N +                        SV++ G  I  +  
Sbjct: 828 FTHEGAVKIAVKATKKLPENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQ 887

Query: 736 KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+ F  +      +  G GLGL+I      + GG + + S     +T     P
Sbjct: 888 DYIFDAFTQSEGQSTRKYGGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFP 943


>gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 700

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 149/378 (39%), Gaps = 17/378 (4%)

Query: 418 NLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++T  +     +     +     ++  +E V      GRI  ++  F +L          
Sbjct: 35  DMTEALQDRLWQIAESEERYRVLVEATTEAVVQRDGQGRITFASAGFAALLGM------- 87

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +  I +T S    E    +  A  +   ++    + G     S   +  S   +   
Sbjct: 88  -KPLELIGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMPVSGS-VDGP 145

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +VT  V A R L E       A+  K+ F+  VS+ELR+PL  I+G  DLL  
Sbjct: 146 NWLRAGQDVTARVEAARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLD 205

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+ +Q  YVE    S   LL LV+ ILD + ++AG + L      +  L+  V +
Sbjct: 206 TR---LDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVE 262

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VIL--KA 712
            +A +  +  + I +     L +  V D  R+ QI   +  NA+ F+  G   V L    
Sbjct: 263 LLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTGGVGVSLARSG 322

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                  + +V++ G  IPE+    +F  F          G GLGL+I    +    G +
Sbjct: 323 EEQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSASHEGTGLGLAITRRLVERMNGTI 382

Query: 773 SISSSDEGVTTINCRIPS 790
              S+    +T    +P 
Sbjct: 383 EARSTMGRGSTFRVMLPL 400



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 166 LRILSLDGIYSELAE-TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LR        S++ E    +  +++     ++VL ++    V  RD  G I +A+  +  
Sbjct: 24  LRRREPVVPESDMTEALQDRLWQIAESEERYRVLVEATTEAVVQRDGQGRITFASAGFAA 83

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
               + +           L  + I++      A      E       G  + +  + +  
Sbjct: 84  LLGMKPLEL-----IGSTLSPQVIERGASEQRADGVRVVEERLVPVDGLPRWFSFIEMPV 138

Query: 285 SFGEAGI-----AIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S    G        DV+  +     L           VA + F
Sbjct: 139 SGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAANVAKSRF 181


>gi|288941100|ref|YP_003443340.1| signal transduction histidine kinase with CheB and CheR activity
            [Allochromatium vinosum DSM 180]
 gi|288896472|gb|ADC62308.1| signal transduction histidine kinase with CheB and CheR activity
            [Allochromatium vinosum DSM 180]
          Length = 1994

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 103/673 (15%), Positives = 252/673 (37%), Gaps = 63/673 (9%)

Query: 157  GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
            G+V G  A L    +     EL                F+ +++S +  +   D++G ++
Sbjct: 813  GQVVG--AVLNFSDIS----ELHRAESAHA---GSEQRFRQVWESANEGMLLTDESGCMV 863

Query: 217  WANISYKKNTETEGIVFQKAIGESRKLFKEEIKK------RMISSSALEKNFCETVSTLE 270
              N + ++     G    + +G+  ++   E ++      R   ++  E+      +   
Sbjct: 864  LVNPALERMF---GYGPGELVGQPVEILVPESRRIRHRIDRAAFAAGSERGRAMDHARDL 920

Query: 271  HG---NNKSYKI----VRVLNSFGEAGIA--IDVSKEITVNDQLTHTYE----ILHNLTV 317
             G       + +      +    G   +A   D+++       L  + +     L     
Sbjct: 921  QGRCKEGTLFDVAIGLSNIAMDGGRFTLASVEDITERKRAERALRESEQRLRLALDAAQA 980

Query: 318  AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
                ++ +    + +    EL+ +        PS       +   +    +   +   E 
Sbjct: 981  GTWEWNLDSDRNYWSGRNWELYGLKQD--ECEPSYQAWRGSVHPEDLERVERIIREAVEQ 1038

Query: 378  IFS---VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL--ETKYNTL 432
                   ++      +       +   +   S+     I    ++T Q +          
Sbjct: 1039 ETGFEVEWRVKRPPGEPTRWLLSRAQPIASDSDQPRRYIGAVIDITDQKEAVQRAALAGE 1098

Query: 433  VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----------EENRLSPGTHIRN 482
            +K+    +D    G   +      +  +P F+ ++               RL     +  
Sbjct: 1099 LKILQTLLDTSFAGYFDWNIAEGTEYLSPTFKRMFGYADDELPNTPESWQRLIFPEDLPG 1158

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            +     R+            +     D R        + +  V++++    P  + +   
Sbjct: 1159 VFEVYERHVRSHGSVPYHNEVRYRHKDGRTIW----VICAGLVVDWTPDGEP-RRLIGYH 1213

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++T   + E+AL+E  +    ++  K++F+ ++S+E+R+P+  ++GF  LL+   L   
Sbjct: 1214 IDITALKQVEQALSEARDQANASNLAKSAFLANMSHEIRTPMNAVLGFCYLLEQRALDPT 1273

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            ++     V  I  +   LL L+NDILD + ++AG +++  +   L++LL+ +   +    
Sbjct: 1274 SA---DLVRKIHGAGQALLGLINDILDFSKIEAGHLEIESTPFQLSELLDTLAGIMTAAA 1330

Query: 663  HENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--- 717
             +  + + +   G+ +   + D  RL Q+   +L NA+ F+++G   + ++   ++G   
Sbjct: 1331 GDKPLELVLTPPGEGIEGLIGDAGRLQQVLINLLGNAIKFTARGEVELRVEQVAEHGDRL 1390

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
            D  F+V++ G  I  +   ++FN F    +    +  G GLGL+I +  +++ GG + + 
Sbjct: 1391 DLRFTVRDTGIGIAPEHQTNIFNAFSQADNSIGRRFGGTGLGLAISQRLVHMMGGRLELE 1450

Query: 776  SSDEGVTTINCRI 788
            S+    +     +
Sbjct: 1451 STLGQGSAFYFTL 1463



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 143/435 (32%), Gaps = 65/435 (14%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVL---FDSLDFLVWHRDQAGDILWAN----ISYK 223
           L  + +EL     +   L   I V   +       D  V  R  A  I  +N     ++ 
Sbjct: 559 LPELRTELKSLGYRL--LQEQIDVLPGIGMRLRIADQRVRIRPVARRIRLSNEQLTQAFL 616

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
              E           E+  L  E     +           E + ++      +++ ++ L
Sbjct: 617 IVFEELPPDHWGVETEAASLDAEREDDEITRLRQELAETREYLQSVLDQRELAHEELQSL 676

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEIL-------------------------HNLTVA 318
                  I +   +  T N++L  + E L                         +++  A
Sbjct: 677 QEE----IQVSTEELQTANEELQSSNEELTTLNDELRLKTNESTELSTTLANIQNSIRTA 732

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           + + D+   +   N   V ++ I          +D++   L     +P  L      + +
Sbjct: 733 LIVVDREGRITRFNALAVRIFGI---------VDDDIGNHLVG---IPCHLTLPYLPDCL 780

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNT 431
             V    E+  +  H  +    H ++  +P         G +  F +++     E+ +  
Sbjct: 781 ERVVSQGESVIERVHQGD---FHYLMQIDPYRDEFGQVVGAVLNFSDISELHRAESAHAG 837

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +   +  +  +EG+ +    G + L NPA   ++      L  G  +  +     R  
Sbjct: 838 SEQRFRQVWESANEGMLLTDESGCMVLVNPALERMFGYGPGEL-VGQPVEILVPESRRIR 896

Query: 492 NESDGWDLFAAIIT-SFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQ-TMLTFVNVTD 547
           +  D     A        D  + LQG  +   L D  +  S I +   + T+ +  ++T+
Sbjct: 897 HRIDRAAFAAGSERGRAMDHARDLQGRCKEGTLFDVAIGLSNIAMDGGRFTLASVEDITE 956

Query: 548 SVRAERALTEKNEAL 562
             RAERAL E  + L
Sbjct: 957 RKRAERALRESEQRL 971


>gi|75906870|ref|YP_321166.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
 gi|75700595|gb|ABA20271.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
          Length = 1741

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 121/653 (18%), Positives = 235/653 (35%), Gaps = 51/653 (7%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL----WANISYK 223
            I ++ GI +++ E  L    L       +   D++ F        GDIL    +AN S++
Sbjct: 1111 IYAMCGISTDITERKLAEDSLLRFHKAMESTSDAIIF--------GDILNISNYANPSFQ 1162

Query: 224  KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
            +      +   +A G    +F+E  K+R I +  ++         +   +    ++    
Sbjct: 1163 ELYGY-NLEQLQAAGGVCTIFQEPQKQREIMARVMKGESWRGEVAMRSRDGHLLQVDLRA 1221

Query: 284  NSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ---NRYLQFHN 332
            ++         G   I  D++K   V + L      +   +  I I D    NR + + N
Sbjct: 1222 DAIRDSNGKIIGTVCIHTDITKRQQVEEGLKLRDRAIDASSNGIIIADASTPNRPIIYVN 1281

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
             +F  +                  E +    +L +  +         S    +       
Sbjct: 1282 PAFERMTGYSSD------------EVIGQNFRLFQSADIDQLGLRELSTAMQAGKACTVV 1329

Query: 393  ---HLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
               +  +G  L   +  +P           I +  ++T +   ET      +     +  
Sbjct: 1330 LRNYRKDGSLLWNELNISPVYDQTGQLTHYIGIQTDITERKQAETALLVSQQRLQYLLTS 1389

Query: 443  LSEGVAVF---GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
                +      G  G I +SN          +  +       N                +
Sbjct: 1390 SPAVIYTCKTCGDFGSIFVSNNITTITGYEAQEFIENSDFWFNHIHPEDAPSVLKKLSSV 1449

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              A     +       GT   L D             + +   +++TD  + E  L    
Sbjct: 1450 LEAETYKLEYRFLHKDGTYHWLYDQRRVVKDDTKNPVEMVGYLIDITDRKQLEEYLKVAL 1509

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E  ++  E+K+ FV   S+E R+PL+ I+  ++LL+  +      KQ  ++  I  +   
Sbjct: 1510 EKEKELSELKSRFVSMTSHEFRTPLSTILSSSELLEHYRHKWTEEKQLTHLHRIQTAVKR 1569

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            +  ++NDIL +   +AG ++     + +      + + I   ++   +    IS+ +  S
Sbjct: 1570 MTEMLNDILIIGKAEAGKLEFMPKPLDVVAYCRNLVEEIQLNLNNKQVDF--ISEYQSMS 1627

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
               D + L  I   ++SNA+ +S   S V +K    +   +F V + G  IP +    +F
Sbjct: 1628 CCMDEKLLGHILINLISNAIKYSPVNSNVQVKFYCRDQCAVFEVHDWGIGIPAEDITHLF 1687

Query: 740  NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              F    + G   G GLGL+IV+  +++H G +S+SS+ E  T     IP K+
Sbjct: 1688 ESFYRAKNVGNILGTGLGLAIVKKCVDVHEGEISVSSNSEIGTLFTVNIPLKQ 1740



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 97/302 (32%), Gaps = 33/302 (10%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYL 328
             +  +    L       +A ++       +QL  + ++L      +   +   D+N   
Sbjct: 425 ERRVAERTLALQKANRQLLA-EIGDRQIAQEQLRQSQQMLQLVIDTIPHCVFWKDRNSVF 483

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NR F +L   D        +  + L  L+ A+           +++   V +++   
Sbjct: 484 LGCNRKFAKLLGFDYPENIIGKTAHDFLANLQDADL---------HRQSDVRVIETNTPE 534

Query: 389 ---KDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
               +    PNGQ + +     P         G +   E++T +  ++       +    
Sbjct: 535 YHIVEPLLKPNGQKIWLEKNKIPLHDPKGNVVGILSTLEDITERKQVQEALEKSEERFRF 594

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             + + + V +  PDG ++  N      +      +      ++I         E   W 
Sbjct: 595 LAESIPQQVWIARPDGYLEYVNRRTLEYFGNVPEAILGWKWQQSIHPDDRNRCLE--IWQ 652

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAER 553
              A     D E + L+ T +     +     + L ++Q  +        ++ D  R E 
Sbjct: 653 HCVATGEPLDVEFRWLRTTDQTYRWHI--GRALALRDSQGNIINWFGTNTDIDDRKRTEE 710

Query: 554 AL 555
           AL
Sbjct: 711 AL 712



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/391 (14%), Positives = 122/391 (31%), Gaps = 36/391 (9%)

Query: 182  TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-S 240
                  L +    F+ L ++    VW  D+     + +    K  +  G   Q+ +G   
Sbjct: 873  QQTEAALRHSEERFRNLVETSSDWVWEVDENAIYTYVSP---KAKDILGYEPQELLGRTP 929

Query: 241  RKLFKEEIKKRMI----SSSALEKNFCETVSTLEHGNNKSY-------KIVRVLNSF-GE 288
              +      +R++    S  A ++ F    +T  H +            I   +  F G 
Sbjct: 930  LDMMPPTEAERVMKIFNSIIAAQQPFKCLENTNVHQDGHLVVLETSGVPIFDAVGKFCGY 989

Query: 289  AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             G+  D++    V   L  T +    IL N    I + D        N+ + +L+    +
Sbjct: 990  RGVDRDITARKEVETNLYQTQQQLQVILDNSPAIIYVMDLQNRFILVNQQYEKLFHTTQS 1049

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
             +      +   + +     +    N +     +    +     +D  H      L +  
Sbjct: 1050 EIVGKSVYETWPDDIAYQYAI---NNRQVITTGMAIEVEEMVPQEDGLH----TYLSIKF 1102

Query: 405  TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                R G I+    ++  +         +    + ++  S+ +           +NP+F+
Sbjct: 1103 PLKDRNGIIYAMCGISTDITERKLAEDSLLRFHKAMESTSDAIIFGDILNISNYANPSFQ 1162

Query: 465  SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII--TSFDDERKSLQGTLELLS 522
             L+     +L            C+ +       ++ A ++   S+  E         LL 
Sbjct: 1163 ELYGYNLEQLQ------AAGGVCTIFQEPQKQREIMARVMKGESWRGEVAMRSRDGHLLQ 1216

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
               L    I   N + + T    TD  + ++
Sbjct: 1217 VD-LRADAIRDSNGKIIGTVCIHTDITKRQQ 1246



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 112/328 (34%), Gaps = 45/328 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE---TEG 230
           + +E+ +  +  ++L     + +++ D++   V+ +D+    L  N  + K       E 
Sbjct: 442 LLAEIGDRQIAQEQLRQSQQMLQLVIDTIPHCVFWKDRNSVFLGCNRKFAKLLGFDYPEN 501

Query: 231 IVFQKAIGESRKL----FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
           I+ + A      L       +   R+I ++  E +  E +    +G     +  ++    
Sbjct: 502 IIGKTAHDFLANLQDADLHRQSDVRVIETNTPEYHIVEPL-LKPNGQKIWLEKNKIPLHD 560

Query: 287 ------GEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFV 336
                 G      D+++   V + L  + E       ++   + I   + YL++ NR  +
Sbjct: 561 PKGNVVGILSTLEDITERKQVQEALEKSEERFRFLAESIPQQVWIARPDGYLEYVNRRTL 620

Query: 337 ELWE-IDLAFLATNP-------SNDELLEFLRSANKLPEQLNWK-TWKENIFSVYKSSET 387
           E +  +  A L             +  LE  +      E L+ +  W       Y+    
Sbjct: 621 EYFGNVPEAILGWKWQQSIHPDDRNRCLEIWQHCVATGEPLDVEFRWLRTTDQTYR---- 676

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV--QGETIDHL-- 443
               WH+  G+ L +  +            ++  +   E      VK+      +D +  
Sbjct: 677 ----WHI--GRALALRDSQGNIINWFGTNTDIDDRKRTEEALAERVKLSDFRSAVDTILT 730

Query: 444 ----SEGVAVFGPDGRIKLSNPAFRSLW 467
                + +     D  +K  N AF  +W
Sbjct: 731 QSYTLQDLMHGSADAVVKHLNAAFARIW 758



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 91/276 (32%), Gaps = 26/276 (9%)

Query: 291  IAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
            IAI + ++      L H+ E   NL    +  +   D+N    + +    ++   +   L
Sbjct: 866  IAIGIKRQ-QTEAALRHSEERFRNLVETSSDWVWEVDENAIYTYVSPKAKDILGYEPQEL 924

Query: 347  ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                  D +      A ++ +  N     +  F   +++  H+      +G  + +  + 
Sbjct: 925  LGRTPLDMMPPT--EAERVMKIFNSIIAAQQPFKCLENTNVHQ------DGHLVVLETSG 976

Query: 407  NPRGGTIWMF-------ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
             P    +  F        ++T + ++ET      +     +D+    + V     R  L 
Sbjct: 977  VPIFDAVGKFCGYRGVDRDITARKEVETNLYQTQQQLQVILDNSPAIIYVMDLQNRFILV 1036

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            N  +  L+ T ++ +   +         +  Y  ++   +   +    ++      G   
Sbjct: 1037 NQQYEKLFHTTQSEIVGKSVYETWPDDIAYQYAINNRQVITTGMAIEVEEMVPQEDGLHT 1096

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             LS         PL +   ++  +    +   ER L
Sbjct: 1097 YLSIK------FPLKDRNGIIYAMCGISTDITERKL 1126



 Score = 45.3 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 60/463 (12%), Positives = 133/463 (28%), Gaps = 103/463 (22%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES----- 240
             +         + ++   L+W        ++ N ++ + T   G   ++ IG+S     
Sbjct: 163 DAIGASDESLWRVANTAPILIWISATDTSCIFFNKAWLELT---GSTLEQEIGKSWSEKL 219

Query: 241 -RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY---KIVRVLNSFGEAGI---AI 293
             +  +  +   + +    +    E      +G         + R  ++   AG     I
Sbjct: 220 HPEDLQGFLDVYLSAFHTHQFFSVEYRLLGLNGEYLWLLNIGVPRFTSNGDFAGYINSCI 279

Query: 294 DVSKEITVNDQLTHTYEIL-------------HNLTVAIAIFDQNRYLQFHNR--SFVEL 338
           D+++       L  +   L              NL+        N  L F N    F + 
Sbjct: 280 DITEHKQYFAALEESTNRLKLALEATNTIYWERNLS--------NDQLFFLNPVIEFGDS 331

Query: 339 WEIDLAFLAT--NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            E+  + + +  +P + E ++         E +   +  E    +  + +  K  W L  
Sbjct: 332 EELTHSEVMSFFHPDDREKVDMAAQ-----EAIANCSCLEIEHRLPVAGQPSKYKWFLSK 386

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVD-------------------------------- 424
              L    T  P    I +  ++T +V+                                
Sbjct: 387 STIL-TDTTGKP-TRMIGISMDITDRVEAQDALEQANQELERRVAERTLALQKANRQLLA 444

Query: 425 -------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
                   + +     ++    ID +   V     +      N  F  L   +      G
Sbjct: 445 EIGDRQIAQEQLRQSQQMLQLVIDTIPHCVFWKDRNSVFLGCNRKFAKLLGFDYPENIIG 504

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPN- 535
               +  A      +          +I +   E   ++  L+     + LE + IPL + 
Sbjct: 505 KTAHDFLANLQ---DADLHRQSDVRVIETNTPEYHIVEPLLKPNGQKIWLEKNKIPLHDP 561

Query: 536 ----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                  + T  ++T+  + + AL        +  E +  F+ 
Sbjct: 562 KGNVVGILSTLEDITERKQVQEAL--------EKSEERFRFLA 596


>gi|124006365|ref|ZP_01691199.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134]
 gi|123988022|gb|EAY27693.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134]
          Length = 2102

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 167/435 (38%), Gaps = 21/435 (4%)

Query: 369  LNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVI-VTSNPRGGTIWMFENLTVQVDLE 426
            +N   W +  F  Y+      +  W   +G          +   G++    N+  +   E
Sbjct: 1435 INNPDWIQPYFVEYRMLMGNGEYHWFRESGIVARDEYGNPSKVAGSLI---NIHEKKHAE 1491

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
                         ++   +G+      + R   S+  +R L    +     G   R +  
Sbjct: 1492 EALRESEARLQYALEATRDGLYDIDMLEDRTFASSNYYRMLGFEPDEFDVNGQVWRKLLH 1551

Query: 486  TCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTF 542
               +       D +        S +   +   G  +   D         +  A +T+ T 
Sbjct: 1552 HEDKEKVITAFDQYKELNFPFYSIEYRMQCKDGEYKWFLDRGKAVEFSQVGKAIRTIGTM 1611

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             N+ +  R E  L     A   A + K+ F+  +S++LR+PL  I+G+  +LK  K  ++
Sbjct: 1612 TNIDERKRYEEDLQSAKAAAEAASQAKSVFLASMSHDLRTPLNGILGYAQILKKEK--NI 1669

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
               Q   ++ I  S   LL L+NDIL L+ +++G ++L  +     D +  V        
Sbjct: 1670 TPPQRDGLQIIERSGEQLLLLINDILHLSKIESGKLELENNDFNFADFVKNVVSITRVWA 1729

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------ 715
               NI  +  S  +L  FV  D +R+ QI   +LSNA+ F+ +G  V  +          
Sbjct: 1730 ENKNIDYRFESPAQLPYFVNGDEKRIRQILFNLLSNAIKFTDEGG-VTFRITHTPHPTKV 1788

Query: 716  -NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVS 773
             N  F+F V++ G+ IP+D    +F  F        Q  G GLGL+I    + L  G + 
Sbjct: 1789 LNHIFVFEVEDTGTGIPKDTIAKIFEPFHQVRGSRHQAEGTGLGLAICNRLVKLMDGSIQ 1848

Query: 774  ISSSDEGVTTINCRI 788
            + S+    +     I
Sbjct: 1849 VESTLGKGSLFKLTI 1863



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 110/358 (30%), Gaps = 28/358 (7%)

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVLNSFGEAG-- 290
            +A  +       EI++        ++        L+ G    +  ++  ++N  G+    
Sbjct: 693  RAFYQDDDKLHREIQRVKRVLKKKQEVLFTDRLDLDGGKVLFRENRLTPIINEQGDCTHL 752

Query: 291  --IAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEI--- 341
              I+ D++K       L  +   L          +  +D      + +  F  +      
Sbjct: 753  LIISRDITKNRIAKAALKESETRLKLAIEAAHQGLWDWDIRANENYLSPDFYRILGYQYY 812

Query: 342  DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
            +   +   P  D+ L  +   ++ P+  N+   ++            +      +G    
Sbjct: 813  ENPPIPFKPDYDQWLSHVHPDDR-PKVANF---QQRYLDEEIPKYEVELRIRCKDGSYKW 868

Query: 402  V-----IVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
            V     IV  N  G     + +  ++T +   +       +    T+ ++   +      
Sbjct: 869  VASKGQIVQKNRLGIPIRMVGIINDITERKHTDELLRRSEEQMKMTVQNVPVMINALDEK 928

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERK 512
                + N     +       +    H+  +     +Y  +     L       +++    
Sbjct: 929  LNFVMWNAECERITGYSSQEIIGNRHVFQMLIPDDKYRKKVYRQWLVRKGDFKNWEVAII 988

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-KADEIK 569
               GT +++S +       P+         V+VTD  +A  AL +  E L+   +  K
Sbjct: 989  CKDGTEKIISWTQ-NSKHYPIAGWAHWGVGVDVTDRNKALYALRDSEETLKLAMNAAK 1045



 Score = 41.1 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 64/472 (13%), Positives = 143/472 (30%), Gaps = 34/472 (7%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            + GI +++ E     + L       K+   ++  ++   D+  + +  N   ++ T    
Sbjct: 887  MVGIINDITERKHTDELLRRSEEQMKMTVQNVPVMINALDEKLNFVMWNAECERITGYSS 946

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALEKNF----CETVSTLEHGNNKSYKIVRVLNSF 286
                      + L  ++  ++ +    L +       E     + G  K     +    +
Sbjct: 947  QEIIGNRHVFQMLIPDDKYRKKVYRQWLVRKGDFKNWEVAIICKDGTEKIISWTQNSKHY 1006

Query: 287  GEAGIA-----IDVSKEITVNDQLTHTYEILHNLTVAIA---IFDQNRYLQFHN--RSFV 336
              AG A     +DV+        L  + E L  L +  A   ++D +     +N  + + 
Sbjct: 1007 PIAGWAHWGVGVDVTDRNKALYALRDSEETLK-LAMNAAKQGLWDWDTKNNKYNSFQYYH 1065

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHL 394
             L      F AT+ +   L+      N L  Q  + T +   +S+       K T  W  
Sbjct: 1066 LLGYRPNEFEATHENWVSLIHPDDVQNVLNTQQRYLTAETPDYSLEYRMRAKKGTYKWFF 1125

Query: 395  PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
              G+T+       P    I +  +++             +     + +L   V     + 
Sbjct: 1126 AKGKTVARDEQGRPE-RMIGIISDISELKQATQSLRESERQLSTLMSNLPGMVYRCHNNQ 1184

Query: 455  R--IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
               +   +    +L          G    N            +           F+ E  
Sbjct: 1185 ERPMVFVSEGSTALTGITPEEFIEGKRKFNDIILPEHKTILWEEAQTALKENRPFEVEYP 1244

Query: 513  SL-QGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
             +  G ++ L +   L      +          ++TD   A+  L      L +    + 
Sbjct: 1245 VMVDGQIKWLWEKGRLTGQPGDVKEPMIEGFIADITDRKNAQEELLALKNDLERQVTQRT 1304

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              ++  +++L          + LL+ S+  +   K  +  E +  +   L  
Sbjct: 1305 KELRESNHQL----------SLLLQESQENAETLKAQE--EELRQNVEQLNK 1344


>gi|188584892|ref|YP_001916437.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349579|gb|ACB83849.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 26/369 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +K     +     +  + +G+ V   D +I L N A   ++   E  +     +  +   
Sbjct: 261 SKLKREKQKAEAIVQSIGDGIIVTNEDNKIILVNKAAEDVFDIREKEVIDTHFLEAL--- 317

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   +  ++F  I  S D+         +L   S  + S+I   +       VN  
Sbjct: 318 --------NNQEIFDLIKKSKDES--------QLYYKSYTDISMIKDGDTNYYRIIVNPI 361

Query: 547 DSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +  ++      L +    L+K DE+K+ FV  VS+E R+PLT+I     LL     G +
Sbjct: 362 KAKDSKTMGVITLIQDITKLKKVDELKSQFVSTVSHEFRTPLTSINMSIGLLLDKIPGDI 421

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N  Q + ++ I   S  L  LVN++LDL+ +++G M++++    + +++    + +  + 
Sbjct: 422 NDDQKELLQVIQEDSERLNRLVNELLDLSRIESGKMQMDFDYYDIKNIIQHAVKPLRIQA 481

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI 720
            E NI+IK+     L    AD  ++  + S ++ NA+ ++    T  + ++  +     +
Sbjct: 482 EEKNIQIKINVSDNLPKVRADHTKIGWVVSNLVGNALRYTPTDGTGVINIETKQTANKIV 541

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            SV +NGS I E+  K +F++F+  N     + G GLGL+I    +  HGG + + S   
Sbjct: 542 TSVTDNGSGISEEYQKIIFDKFLQVNGGESTQGGAGLGLAISREIVRAHGGDMWVDSELG 601

Query: 780 GVTTINCRI 788
             +T    +
Sbjct: 602 EGSTFYFTL 610



 Score = 41.1 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +  +      I+ ++   I + +++  +   N++  ++++I          +   LE L 
Sbjct: 263 LKREKQKAEAIVQSIGDGIIVTNEDNKIILVNKAAEDVFDIRE----KEVIDTHFLEALN 318

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTI 413
           +      Q  +   K++        +++ D   + +G T +  +  NP         G I
Sbjct: 319 N------QEIFDLIKKSKDESQLYYKSYTDISMIKDGDTNYYRIIVNPIKAKDSKTMGVI 372

Query: 414 WMFENLTVQVDLET 427
            + +++T    ++ 
Sbjct: 373 TLIQDITKLKKVDE 386


>gi|304317189|ref|YP_003852334.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778691|gb|ADL69250.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 453

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 167/396 (42%), Gaps = 24/396 (6%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLET--KYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            + + S    G +    N+      ET  +           +  L  GV  F  + +I L
Sbjct: 77  RIEIKSIDEIGQLSSAINIMSDKLQETIDELYDRNAKLEAILKGLINGVIAFDENEKILL 136

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N + R++   +E+ +  G HI ++          +   D+   II    ++  ++    
Sbjct: 137 INDSARAILDIKESSVV-GKHILDVVR-------NTKFHDILEKIIK---NKGYNIDNLE 185

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               +  L+    P+ +  T      V         +      +RK ++I++ FV +VS+
Sbjct: 186 INTFNKYLKIYSSPIVHQVTHKKLGFVV--------IINDITEVRKLEKIRSDFVANVSH 237

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT+I GF + L+   + ++  ++ +++E I   +  L  L+NDIL L+ ++    
Sbjct: 238 ELRTPLTSIRGFIETLREGAIDNV-EERDKFLEIIEFEAERLTRLINDILTLSEIENLKE 296

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                 I ++D +NE+   +    ++ +I++    +         + RL Q+   ++ N 
Sbjct: 297 GFVKEDIAIDDEVNEIFYIMEKTANDKSIKLIKDLNCSGVVIKTSKDRLRQMIINLVDNG 356

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + ++ +G  V +      GD +  VK++G  I ++    +F RF        R   G GL
Sbjct: 357 IKYTPEGGYVKVTTIDRKGDVVIEVKDSGIGISKENIPRLFERFYRVDKGRSRKLGGTGL 416

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+IV+  +    G +S+ S     T     +P  +
Sbjct: 417 GLAIVKHIVESMKGSISVESEVGKGTKFTIVLPKDQ 452


>gi|91792026|ref|YP_561677.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91714028|gb|ABE53954.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
          Length = 853

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 148/297 (49%), Gaps = 11/297 (3%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             +  A  I   DDE   L  +L  +L++   + SII L ++ T    V      + E+ 
Sbjct: 207 HKNFKARAIKRSDDEIGQLADSLNAMLTELSKQESIISLNHSLTAEIAV----RKQTEQE 262

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    ++  +A+  K+ F+ ++S+E+R+P+  IIGF D++     G L+ KQS+++  + 
Sbjct: 263 LINMRDSAEQANRSKSDFLANMSHEIRTPMNAIIGFVDIVLE---GDLDQKQSKHLMTVR 319

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVIS 673
            S+  L NL+NDILD+A ++AG ++L  +   +  LL +V ++   K  +  +  I+ I+
Sbjct: 320 NSAKDLHNLLNDILDVAKLEAGKVELESAPFSVKKLLGQVIKTFELKAKDKGLVFIQRIA 379

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +     F+ D  RL Q+   ++ NA+ F++ GS  I     +     F +++ G  I +D
Sbjct: 380 EDLPAQFLGDALRLKQVLMNLIGNAIKFTASGSITIAVEQINQEQLQFIIRDTGIGIAKD 439

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F        R   G GLG +I +  + L GG + + S +   TT    +
Sbjct: 440 KLEHIFESFTQADTSTSRKYGGTGLGTTISKRLVELMGGKIWLESDEGVGTTFYFTL 496


>gi|193084071|gb|ACF09741.1| two-component system sensory histidine kinase [uncultured marine
           group III euryarchaeote AD1000-40-D7]
          Length = 441

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 4/252 (1%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F N  D V+ E  L    E  + A + K+ F+ ++S+ELR+PL  IIG++++L       
Sbjct: 187 FKNRIDYVKTE-ELKILREQAQNASKAKSDFLANMSHELRTPLNAIIGYSEMLMEEAEDD 245

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                S  +  I++S   LL L+NDILDL+ ++AG M+L+     L   L++++ +    
Sbjct: 246 GLDTYSDDLSKINSSGEHLLTLINDILDLSKIEAGKMELHIEVFELEKHLSQIEATAKPL 305

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + +N  +  +     +     D+ +L QI   +LSNA  F+ KG TV L   +   D  F
Sbjct: 306 VEKNGNKFVIEKPDNIKKLTNDQTKLRQILFNMLSNAAKFTKKG-TVTLAITKSGDDIKF 364

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  + E     VF  F            G GLGL I +    + GG + + S + 
Sbjct: 365 AVVDTGIGMNEGQLGKVFEEFTQAESSTSKDYGGTGLGLPISKMMTEMMGGRMDVESEEG 424

Query: 780 GVTTINCRIPSK 791
             TT +  IP +
Sbjct: 425 KGTTFSITIPIE 436


>gi|90961026|ref|YP_534942.1| two-component sensor kinase yycG [Lactobacillus salivarius UCC118]
 gi|90820220|gb|ABD98859.1| Two-component sensor kinase yycG [Lactobacillus salivarius UCC118]
          Length = 621

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 165/396 (41%), Gaps = 36/396 (9%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+++V+   + +   + +    + H+S+GV      G I + N    +   
Sbjct: 239 GQLAQAVNNLSIRVEETQELSESERRRLDSVLSHMSDGVIATDRRGGITIVNDMAMNYLD 298

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E  +  G  I +I    ++Y            ++   D+    + G  +L+ ++   +
Sbjct: 299 ISEGEVL-GKSILDILDIRNQY--------TLRDLLEKQDEVVLDMSGEKDLILNAY--F 347

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 348 SVIQRESGFISGIVCVLHDVTEQQ-----------KIDRERKQFVSNVSHELRTPLTSMR 396

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             ++++     +  ++ ++ND+L L+ +D+G +KL+   + +N
Sbjct: 397 SYIEALNDGAWRD-EKVAPEFLKVTQDETDRMIRMINDLLSLSRMDSGTVKLDLELVNIN 455

Query: 649 DLLNEVKQSIATKMHE----------NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+N +       + +           N  IK     +      D  + +Q+   I++NA
Sbjct: 456 GLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVELDTDKFIQVVDNIMNNA 515

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           + +S  G  +  +    + + I S+ + G  IP+     VF+RF  V  A    + G GL
Sbjct: 516 IKYSPDGGVITCRLLETHNNVILSISDQGLGIPKKDLGHVFDRFFRVDKARSRAQGGTGL 575

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I +  I LH G + + S +   +T    +P +E
Sbjct: 576 GLAISKEVIELHHGRIWVDSVEGKGSTFYISLPYEE 611


>gi|283852698|ref|ZP_06369963.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571876|gb|EFC19871.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 832

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 126/684 (18%), Positives = 232/684 (33%), Gaps = 113/684 (16%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
             L+++   +V      G +   +    +     G   ++A+G          +      
Sbjct: 20  AALWETAGDIVVVLAPDGRLSAIS---DRGLAFLGRTREEALGRDWFELAIPPEDHDRGR 76

Query: 256 SALEKNFCETVST----------LEHGNNKSYKIVRVLNSFGEAGIAI-----DVSK--- 297
           +AL       +               G  +      +L        A+     D++    
Sbjct: 77  AALAGIVAGRLPAHGRSDAWDLLAAPGRRRISWSHALLAPAAGGQAAVLGCGHDITDRLQ 136

Query: 298 -EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF-HNRSFVELWE---------IDLAFL 346
            E  + +       I + ++ AI I D         N   V+L+                
Sbjct: 137 SEAALRESDAEYRSIFNAVSDAIFIQDAATGAFLEANDRAVDLFGHSLEEFRRLAPPDLT 196

Query: 347 ATNPSN--DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           A +P    DE+L  LR A +          +  +F      ++ +  W   + + +    
Sbjct: 197 AGSPPYSADEILAKLRLAGEG---------RPQLFDWLARDKSGRLFWTEVSLRAVTYKG 247

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAF 463
            +      I +  ++T +   E       K   +  + + E   +   D  R    +PA+
Sbjct: 248 RTR----IIAVVRDITERRMAERALRASEKKFRQLAEAIGEVFWLTATDWKRTFYISPAY 303

Query: 464 RSLWK------------------------------------------TEENRLSPGTHIR 481
             LW                                            E   L P   +R
Sbjct: 304 ERLWGRTTRSLYEAPLSWLESVHPEDRDPVLSYLTSLAGRPVVPGVFPEYRLLRPDGTVR 363

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            + A      +++      A I+    D    RK L+G  E L D V + +     N   
Sbjct: 364 WVQARHFPVADDTGVVYRVAGIVEDITDRVLARKELEGINERLEDMVRDRTRT--LNRMN 421

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                 V +   AE A+    EA   A + K+ F+ ++S+E+R+P+  I+G   +L  + 
Sbjct: 422 EELIREVAERREAEAAMAVAKEAAEAASQAKSEFLANMSHEIRTPMNGILGMAQILGGT- 480

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             SL+  Q  +++ I  S+T LL L+NDILD + ++A  ++L      L  +L  V+ ++
Sbjct: 481 --SLDPAQQGFLKDIEDSATSLLTLINDILDFSKIEADRLELARDPFGLRGVLASVEAAL 538

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
                EN + + V     +    + D  RL Q+   ++ NA+ F+ +G  VI     +  
Sbjct: 539 GVLARENGLELHVDVAPDVPDVLLGDADRLRQVLVNLVGNAIKFTRRGGVVIGVQCVETC 598

Query: 716 ----------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
                       + +FSV + G  I  +    +F  F        RR  G GLGL+I   
Sbjct: 599 LAQESAGPDATQELVFSVSDTGIGIRPEDADRIFEAFTQADGSYTRRFGGTGLGLAITRR 658

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG + + S     +     
Sbjct: 659 LVGLMGGVIGLESEPGQGSVFTFT 682



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 28/230 (12%)

Query: 128 SKATEKLRKEGQS----FDLVAETQNDCAI--KIEGRVSGSCAFLRILSLDGIYSELAET 181
            +   KLR  G+     FD +A  ++      ++  R        RI++   +  ++ E 
Sbjct: 205 DEILAKLRLAGEGRPQLFDWLARDKSGRLFWTEVSLRAVTYKGRTRIIA---VVRDITER 261

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIVFQKAIGES 240
            +  + L      F+ L +++  + W          + + +Y++          +A    
Sbjct: 262 RMAERALRASEKKFRQLAEAIGEVFWLTATDWKRTFYISPAYERLWGRTTRSLYEAPLSW 321

Query: 241 RKLFKEEIKK-------RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG------ 287
            +    E +         +     +   F E       G  +  +      +        
Sbjct: 322 LESVHPEDRDPVLSYLTSLAGRPVVPGVFPEYRLLRPDGTVRWVQARHFPVADDTGVVYR 381

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            AGI  D++  +    +L    E L ++     + D+ R L   N   + 
Sbjct: 382 VAGIVEDITDRVLARKELEGINERLEDM-----VRDRTRTLNRMNEELIR 426


>gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 174/390 (44%), Gaps = 24/390 (6%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            + LT++ +L  +            +H    + +     ++   N ++  L       + 
Sbjct: 258 IQTLTIKREL-IRSEKEKTKLALVAEHAHNAIFILDKQSKLTWINQSYSVLSGNTLEDIK 316

Query: 476 PGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL- 533
                  +     ++ N  +    L A    SF+       GTL       ++ S+ P+ 
Sbjct: 317 GKDLPSVLQLDKIQHANIFTLLQSLKAGTSVSFELTNNHKDGTLY-----WIDVSVTPIF 371

Query: 534 -PNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            PN   M       ++T     E  L +  +    +++ K++F+  +S+ELR+PL  I+G
Sbjct: 372 KPNGNIMHYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILG 431

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              +++++     + +Q + ++ +  S   LL+L+NDILD + ++   ++LN+++   ND
Sbjct: 432 MAQIIESNIK---DEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFND 488

Query: 650 LLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++ +  +  +   +  ++  + ++  +   F+ D+ R+ QI   ++SNA+ F+ KGS +
Sbjct: 489 VIDPIANTYQSICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHKGS-I 547

Query: 709 ILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
            L       A+        V++ G  I +   K +F  F+       R   G GLGL+IV
Sbjct: 548 TLNFSHTLTAKGEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIV 607

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +   +   G++S++SS+   T     +P +
Sbjct: 608 KQLTDTMKGYISVNSSEGKGTCFTLVLPLE 637


>gi|56460833|ref|YP_156114.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR]
 gi|56179843|gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina loihiensis L2TR]
          Length = 866

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 169/377 (44%), Gaps = 28/377 (7%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            +++  +  + L   V    P+ ++   N AF + +  +   L+          T +   
Sbjct: 71  SLQLFEQVFNDLPTRVYWRDPELKLLGGNRAFANDFGIDPESLA--------GKTDAEID 122

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNA-----QTMLTFV 543
           + +    L      +F  +  S+   +EL        +E+S +PL +        + ++ 
Sbjct: 123 SLASNDVLLERDRKTFSQQAPSVNAEIELKVSGKSQWVEHSSVPLYDDDHNIIGILGSYY 182

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++        + +  E   +A++ K  F+ ++S+E+R+P+  I+G  +L   ++   L 
Sbjct: 183 DISGIKSVAEEMEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKTE---LT 239

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ +Y++ I +SS  LL ++NDILD + +DAG + +      L D+L  +    A + +
Sbjct: 240 QKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLADMFAYRAY 299

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
           + ++   +     + +  + D  RL Q+   ++SNA+ F+  G   +    L ++RDN  
Sbjct: 300 DKDLEFIINLPANIPTRLIGDPLRLNQVLVNLISNAIKFTEDGEINVAVNLLDSSRDNVL 359

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              SV + G  + E+   ++F  F        R   G GLGL+I    I L GG + ++S
Sbjct: 360 LRISVTDTGIGMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLILLMGGDIGVTS 419

Query: 777 SDEGVTTIN--CRIPSK 791
           +    +T      +P +
Sbjct: 420 AAGQGSTFYIEVELPLQ 436



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           D L    ++ ++L   +   D    L   NR+F   + ID   LA     D  ++ L S 
Sbjct: 70  DSLQLFEQVFNDLPTRVYWRDPELKLLGGNRAFANDFGIDPESLAGK--TDAEIDSLASN 127

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWM 415
           + L E  + KT+ +   SV    E         +G++  V  +S P         G +  
Sbjct: 128 DVLLE-RDRKTFSQQAPSVNAEIELKV------SGKSQWVEHSSVPLYDDDHNIIGILGS 180

Query: 416 FENLT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
           + +++            +       + +GE + ++S  +
Sbjct: 181 YYDISGIKSVAEEMEKAKETAERANQSKGEFLANMSHEI 219


>gi|218256903|ref|ZP_03474391.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225891|gb|EEC98541.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
          Length = 529

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 104/520 (20%), Positives = 209/520 (40%), Gaps = 44/520 (8%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-----LATNPSNDEL 355
           +  +L     I   L + I ++D    L   N +  +L+ I         L  NP+    
Sbjct: 15  LKKELN-LENIYQKLPIGIELYDGEGNLIDLNETDEQLFAIKRTDIIGINLFENPNFPA- 72

Query: 356 LEFLRSANKLPEQL---NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            + +    K  E      +   K      Y  +   ++T    + + L +        G 
Sbjct: 73  -DQIHRLKKGEEVAFDCQYAFDKIKTNQYYHINPQQENTILYLSIKCLPLKDEDENIYGY 131

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETI--------------DHLSEGVAVFGPD--GRI 456
           I MF + T +     + N L       I              D +   + +  P    ++
Sbjct: 132 IIMFSDETEKYKKIEETNELFNKLKTVIGDGDSLMWEYDIKEDKMHIDLELRDPAKPSKL 191

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           K  N       + +  +L      + +         + +     A     F DE   ++ 
Sbjct: 192 KECN----LTSRKDFYQLVHPDDHQRVLTEAFEKLIKGEIKGYTAQYRRLFRDEYIWVKA 247

Query: 517 TLELL----SDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            ++      +   L+  Y +  + N   +   +   +  R ++ +       ++++++K+
Sbjct: 248 FVQPYKYDENGKPLKILYYLTDITNEINIREKLRAAEKERHQKNIELAK--AQESNKLKS 305

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+PL  I+GF+ +L   +   ++ +   YV+ I+ +S +LL L+NDILD 
Sbjct: 306 MFLANMSHEIRTPLNAIVGFSSILADMQEEDMDERHF-YVDIINKNSDLLLQLINDILDF 364

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + ++AG   ++       ++  E+    A K+ ++ +      D       +D +RL Q+
Sbjct: 365 SKIEAGTFDIHLKKFDFKEICEEIYAVHALKIPDH-VCFSFNRDLPSVELNSDPKRLTQV 423

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            S  L+NA+ F+S G  + L    +      SV + G  I E+ C ++F+RFV       
Sbjct: 424 ISNFLTNAIKFTSDGE-IKLDYLLEKDKIYVSVTDTGIGISEEACNNIFDRFVKL--NTH 480

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++G GLGLSI +S I   GG + + S+    +T    +P 
Sbjct: 481 KQGTGLGLSISKSIIEKLGGKIGVYSTLGKGSTFWFTLPL 520


>gi|182420546|ref|ZP_02643812.2| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182379796|gb|EDT77275.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 821

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 166/381 (43%), Gaps = 9/381 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    ++T +  +E       +      +++ + +     +G+I   N A   +    E 
Sbjct: 412 VLRINDITEEYTMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEE 471

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L    +   +    +    +S  ++    +       +K L   LE +S  + +     
Sbjct: 472 ELIGKNYYDLLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQ-LESISSRIKDNK--- 527

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N    +      + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     
Sbjct: 528 -NNTLGWVRVARNIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQ 586

Query: 593 LLKTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           LL TSK    N  +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L
Sbjct: 587 LLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKL 646

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             ++  S+   +   NI I   +D +      D  ++ +I   +LSNA+ F+  G  + +
Sbjct: 647 TEDITMSVIPYVESKNIDIIFDTDCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEV 706

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
               D       VK+ G  IP  M + +F RF+ N       + G G+GLS+V+S + LH
Sbjct: 707 SIFADEAWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELH 766

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G V +  S+E  +  +  +P
Sbjct: 767 EGKVFLRESNESGSEFSILLP 787


>gi|331269772|ref|YP_004396264.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329126322|gb|AEB76267.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 652

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 109/632 (17%), Positives = 234/632 (37%), Gaps = 56/632 (8%)

Query: 198 LFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
           L+D + F V   R++   I + N ++    + +     ++I E  K+F++         +
Sbjct: 4   LYDDIPFGVIIFREKDLHIQYINYNFGNMFDVDSEFVGRSIDE-LKIFRKIKGAIENCVN 62

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE------ 310
                  + V  L +   + + I   + +        +VS+ + + ++L H+ E      
Sbjct: 63  FRVNKKLKQVEILIN---RYFDITINIKNDIITIFIYEVSQYVNIQNELKHSNENFLCMC 119

Query: 311 --------------------------ILHNLTVAIAIFDQNRYLQFHNRSFVELWE---- 340
                                     +L+N++  I ++D+     F N++ + L      
Sbjct: 120 SELKTKCDILQTLRNRENDCFIHLKNVLNNISEGIIVYDEFGKFYFCNKASMCLVGDDIK 179

Query: 341 -IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
             D+       S  +     +   +L     +       F +      + + +   N  +
Sbjct: 180 KFDVRGFFNKLSYYDFESKGKDLQQLYHDFKYNNRPIREFIIKLKDNNNNNRYIELNSSS 239

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKL 458
              I+       T+   +++T       K     +   + ++ +   +AV   D    KL
Sbjct: 240 ---ILNEKCVINTVITLKDITSIKSKGIKLQEQREFINDVVNTIDVPIAVVEYDDLNYKL 296

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +N  ++ L     N          I       +N+               D+  + +   
Sbjct: 297 ANSKYKDLLFLNNNINDDRVTEPFILDVIHNIFNKDIHKREHVLAPYVIKDKNGNERYYK 356

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +  V E S I   N   +       +           N+ L+   ++K+ F   +S+
Sbjct: 357 IKFTGKVSEKSKINKLNKIFIHATDITEE--------IIHNKELQNISKMKDEFFNMISH 408

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT I     L +      +     + +  +  +   LL L+N+ILD++  +AG +
Sbjct: 409 ELRTPLTIINSSVQLARDIYKEEITRNIGRVLLRVDQNCRRLLKLINNILDISKAEAGFL 468

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L YS   +  +   +  S++       I++   ++ +      D+ +  +I   +LSNA
Sbjct: 469 QLQYSDFDIVVITENIVSSVSIYAKSRGIQLIFDTNEEEKLVALDKDKYEKIILNLLSNA 528

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + F+ KG  + +    +N      VK+ G  I E+  K++F+RF+   +      +G GL
Sbjct: 529 IKFTPKGRKIYVTTTVENNKVKIKVKDQGIGIEEENLKTIFDRFIQIRNSTTNCVQGTGL 588

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL++V++ + L GG + +SS     T      
Sbjct: 589 GLALVKNLVELMGGSIKVSSKLNEGTEFIITF 620


>gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 609

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 92/415 (22%), Positives = 172/415 (41%), Gaps = 33/415 (7%)

Query: 386 ETHKDTWHLPNGQTLH--VIVTSNPRGGTIWMFENLTVQVDLETKYNTLV-KVQGETIDH 442
           E  K    + +G+      +  S+  G     F  +T ++      N    +     + +
Sbjct: 210 ELTKHARAVADGRFTEKTPVFGSDEIGQLSQAFNYMTSRLREALSQNEEEKEKLASILTN 269

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT--HIRNIAATCSRYYNESDGWDLF 500
           +S+GV      GR+ L N     +   E   L+      +  +  + S      +G D  
Sbjct: 270 MSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSLLGLEQSESEALARGEGHDSK 329

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              IT  +     +           +  +  P+   +  +T          E+       
Sbjct: 330 LLEITPREGGEPFM-----------MRVTFTPIHRREIGITGTIAVLQDVTEQE------ 372

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASST 618
              K +  +  FV +VS+ELR+PLT I  +T+ L+    G+L  KQ   ++V  I   + 
Sbjct: 373 ---KLEASRREFVANVSHELRTPLTTIKSYTEALED---GALEDKQMGPRFVGVIQNETG 426

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            ++ LV D+L L+ +D+    L+     + ++L +V+   + +M + +IR  +     + 
Sbjct: 427 RMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVS 486

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKS 737
           + + DR  + Q+   ++SNA+ ++  G T+ + A+  + G    SVK+ G  IP+     
Sbjct: 487 TAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDLDR 546

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F RF        R   G GLGLSI    +  HGG +++ S  E  TT+   +P 
Sbjct: 547 IFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLPL 601



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 28/147 (19%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                  ++      IL N++  +   D+   +   NR   E+  ++   LA +     L
Sbjct: 251 EALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSLL 310

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK----DTWHLPNGQTLHVIVTSNP--- 408
                              +++        E H     +      G+   + VT  P   
Sbjct: 311 -----------------GLEQSESEALARGEGHDSKLLEITPREGGEPFMMRVTFTPIHR 353

Query: 409 ----RGGTIWMFENLTVQVDLETKYNT 431
                 GTI + +++T Q  LE     
Sbjct: 354 REIGITGTIAVLQDVTEQEKLEASRRE 380


>gi|310659855|ref|YP_003937576.1| sensory box histidine kinase yycg [Clostridium sticklandii DSM 519]
 gi|308826633|emb|CBH22671.1| sensory box histidine kinase yycg [Clostridium sticklandii]
          Length = 602

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 168/393 (42%), Gaps = 23/393 (5%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKL 458
            V V S+   G +  MF  LT ++D      +  K      I H+ +G+      G+I  
Sbjct: 221 RVTVKSDDEIGQLGSMFNYLTEKLDTTLLEISSEKSKLNAIIKHMEDGLVAIDGKGQIIH 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NP+F S+    E  L+  ++ + I      Y  + +   +    I++  +         
Sbjct: 281 YNPSFLSMLNLREKDLTDKSYDKII----DDYSKDLEYGAILQKSISNSSENIIFENNKK 336

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +L  S   +       +  ++ F ++T+S R E              +++  FV +VS+
Sbjct: 337 RILKASPALFRDEAGRISGAIVVFQDITESQRLE--------------DMRREFVANVSH 382

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+T I  +++ L    L         +VE I   +  + +LV D+L L+ +D   +
Sbjct: 383 ELKTPITTIKSYSETLLCGALED-KELSKNFVEVIENEADRMSSLVKDLLQLSHMDYEKV 441

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                 + L +++ +  + +       N ++ +    +     ADR ++ Q+   +L+NA
Sbjct: 442 VWEMHHLDLREIVTDSVRKLEVHFQNKNQKLNMKISDEAVPIYADRGKIQQVIINLLTNA 501

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + ++ +   + + A   + + IF ++++G  IP++  K +F RF          + G GL
Sbjct: 502 IKYTPENGNIRISAQVVDKNAIFQIQDSGIGIPKEDIKRIFERFYRVDKGRSRAQGGTGL 561

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI  + I  H G + +SS  E  +      P
Sbjct: 562 GLSIAHNIIKQHKGSIKVSSELEKGSIFTVYFP 594


>gi|254227634|ref|ZP_04921065.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395682|ref|YP_003287535.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio sp. Ex25]
 gi|151939676|gb|EDN58503.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339276|gb|ACY53070.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio sp. Ex25]
          Length = 873

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 161/368 (43%), Gaps = 16/368 (4%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +  +    E  +H  + + +  PDG I   NPAF  L +     +   +          
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNPAFEQLTEYTLEEVIGKSP----GELLQ 289

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFV 543
               + +   L +  +      R  +    +      +E  + P+ +      + +    
Sbjct: 290 GPDTDPNTVALLSKSVRKHSPIRVEILNYTKSKHPYWVELELSPVFDEDGGLLRFIAVER 349

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  R ER L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L  ++     
Sbjct: 350 DITDRRRMERRLSSALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP 409

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +  +  S+  L+ ++NDILD + V+AG + L         L+       A +  
Sbjct: 410 ---RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDFRSLVESCTALCAYQAD 466

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           + N+++ V     + +  V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FS
Sbjct: 467 KKNLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESEHGFDFS 525

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S    
Sbjct: 526 VSDTGIGIPEDRLAHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGK 585

Query: 781 VTTINCRI 788
            +  +  +
Sbjct: 586 GSCFSFSL 593


>gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
 gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
          Length = 729

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 170/392 (43%), Gaps = 20/392 (5%)

Query: 412 TIWMFENLTVQVDLE-----TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            +   E+   +V  E      +   + +   ++I+ + +G A+F  DGR+ ++N A+  L
Sbjct: 52  RVRSIEDENARVRDELSSANDRIQLVERRLWQSIETIPDGFALFDEDGRLVMANRAYL-L 110

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER----KSLQGTLELLS 522
                  + PG     +   C+      D  D+  A    +  ER          + L +
Sbjct: 111 PFDGLTAVGPGVSYMEMLQFCTEE-GIVDIGDMAPAAWREYMRERWQSDAPGPRIVRLWN 169

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              +       P+   +   +++T  VR++  L         A   K++F+ ++S+E+R+
Sbjct: 170 GRAIRLLDQRAPSGDMVSLALDITAEVRSKEVLRRAKHRAEAASRAKSAFLANMSHEIRT 229

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  ++G  DLL+ +    L+  Q+ Y   I  S+  LL ++ND+LD + V+A  + L  
Sbjct: 230 PMNGVMGMADLLRET---DLDEDQALYATTIRNSAEALLGIINDVLDYSKVEADRLSLQL 286

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
               L   L+E+   +  K  +  + + +  D  L +    D  R+ Q+ + ++ NA+ F
Sbjct: 287 DGFDLERCLHEIILLMQPKARDQGVDVWLDYDLFLPTRLRGDGGRIRQVLTNLIGNAVKF 346

Query: 702 SSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           + +G     V+  +A    +   +V++ G  I  D    VF  F  V  A   +  G GL
Sbjct: 347 TPEGHVLIRVVGVSAEGRAEIHVTVEDTGIGIAPDKIGHVFGEFNQVEEAQNRRFEGTGL 406

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  I L GG + + S+    +     I
Sbjct: 407 GLAIAQKLIRLMGGEIWVESAPGQGSVFGFTI 438



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 74/210 (35%), Gaps = 10/210 (4%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
            ++A   + +L +++  +   ++  L K+       +     +   I        E    
Sbjct: 10  ERRARLAAERLLEQKQAELFAANRQLGKHARALSEEIVETRERVRSIED------ENARV 63

Query: 293 IDVSKEITVNDQL--THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            D         QL     ++ +  +    A+FD++  L   NR+++  ++  L  +    
Sbjct: 64  RDELSSANDRIQLVERRLWQSIETIPDGFALFDEDGRLVMANRAYLLPFD-GLTAVGPGV 122

Query: 351 SNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           S  E+L+F      +    +    W+E +   ++S         L NG+ + ++    P 
Sbjct: 123 SYMEMLQFCTEEGIVDIGDMAPAAWREYMRERWQSDAPGPRIVRLWNGRAIRLLDQRAPS 182

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           G  + +  ++T +V  +             
Sbjct: 183 GDMVSLALDITAEVRSKEVLRRAKHRAEAA 212



 Score = 37.6 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 52/156 (33%), Gaps = 18/156 (11%)

Query: 167 RILSLDGIYSELA-ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY--- 222
           R+ S++   + +  E +    ++           +++       D+ G ++ AN +Y   
Sbjct: 52  RVRSIEDENARVRDELSSANDRIQLVERRLWQSIETIPDGFALFDEDGRLVMANRAYLLP 111

Query: 223 ----------KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
                         E      ++ I +   +     ++ M      +      V      
Sbjct: 112 FDGLTAVGPGVSYMEMLQFCTEEGIVDIGDMAPAAWREYMRERWQSDAPGPRIVRL---W 168

Query: 273 NNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTH 307
           N ++ +++      G+   +A+D++ E+   + L  
Sbjct: 169 NGRAIRLLDQRAPSGDMVSLALDITAEVRSKEVLRR 204


>gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1572

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 113/655 (17%), Positives = 232/655 (35%), Gaps = 62/655 (9%)

Query: 183  LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR- 241
            L+ K+L         L+++        +  G+ +  N  +          F+        
Sbjct: 421  LRTKELQEREEALWDLYENSFVAYASVNVDGNFIKHNRQFSLLAGVRREAFKSVNWRDVI 480

Query: 242  KLFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVR--VLNSFGEAGIA----ID 294
                + I           ++  E V   +  G      +    V +  G+        +D
Sbjct: 481  NKENDPIDTVFKQGLRGIRSQDERVQLYDTSGEMIFVSVSTDLVKDDSGQVTEVRFSLLD 540

Query: 295  VSKEITVNDQLTHTYE----ILHNLTVAIA------IFDQ-NRYLQFHNRSFVELWEIDL 343
            +S++  V  ++    +    +L N+   +       I D+    LQ+ + +   +     
Sbjct: 541  ISEQEKVRLEMLKNQQQYQVLLENI-QGVVYRYRVDIHDEFEYTLQYLSPNVEVVTGYSS 599

Query: 344  AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG----QT 399
                 + +    ++ +     +PE  + K  K  +   Y+          + N     + 
Sbjct: 600  QDFLGDNARRTFVDIV-----IPE--DRKELKAELSIAYQEQSFVTRDIRIKNAAKELRY 652

Query: 400  LHVIVT-SNPRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            L +         G  + F+    ++T Q   E +            +    G+  + P  
Sbjct: 653  LQIKAQFVYDEIGDTYYFDGTLFDITEQKLAENRLQLSEDKLKVAAESARMGMWDYYPTE 712

Query: 455  RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI----------- 503
               + N  + ++   E   L       +      + + E    D   A+           
Sbjct: 713  NKVVVNTMYANMLGYEVLDLCIENEQWSTLNAGEQTWLELVHPDDREAVLDTLKAQSKSN 772

Query: 504  ----ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                +  F  +RK       +    V  Y+       +     +N+ +S   +R L    
Sbjct: 773  PQLLMREFRMQRKDGGYDWIMSIGQVHHYTE-EGDAGRISGVHLNINESKALQRELASAI 831

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E    A+  K  F+ ++S+E+ +P+  IIG T L   ++   L  +Q  Y+E    S+  
Sbjct: 832  EIADDANRAKGEFLANMSHEIHTPMNAIIGMTHLALKTE---LTKQQHSYIEKSHRSAQS 888

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LL ++NDILD + ++AG + +      L D+L ++   +  K+ E  + +    D  + +
Sbjct: 889  LLGIINDILDFSKIEAGKLDIETIQFRLEDVLEDIINFVGIKVAEKELELLFDIDPTIPA 948

Query: 680  FV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR---DNGDFIFSVKNNGSSIPEDM 734
             +  D  RL QI + + +NA+ F+  GS +I +   +   D     FSV + G  +  + 
Sbjct: 949  ILQGDPLRLAQILTNLANNAVKFTEHGSVIIGVSIEKLTDDEVTLKFSVTDTGIGMTAEQ 1008

Query: 735  CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             + +F  F        R   G GLGL+I ++  +L GG + +SS     +     
Sbjct: 1009 QQGLFKAFSQADASTTRKYGGTGLGLAICKNLADLMGGEIGVSSEVNKGSIFYFE 1063


>gi|254409964|ref|ZP_05023744.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183000|gb|EDX77984.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1946

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 82/356 (23%), Positives = 146/356 (41%), Gaps = 29/356 (8%)

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R   SN  +          +    +++++    + Y  + +G           D  R+ 
Sbjct: 1145 DRAIASNNVYDDPLLQNATGMCDQVNLKSMLVVRTSYKEKPNGVICLHQ----CDQFRQW 1200

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                +ELL ++V +   I L  AQ +               A+ +  +    A+  K+ F
Sbjct: 1201 SNDEIELL-EAVADQVGIALAQAQLLEQEKHQRQQLAEQNVAMEKAKQIAEAANRAKSDF 1259

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            +  +S+E+R+P+  +IG T LL  ++   L+ +Q+++ E I  S   LL ++NDILD + 
Sbjct: 1260 LATMSHEIRTPMNAVIGMTGLLLDTQ---LSHEQAEFAETIRNSGEALLTIINDILDFSK 1316

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
            +++G ++L      L   + E    +  K  E  I +  + D     +   D  RL QI 
Sbjct: 1317 IESGKLELEEQPFNLRTCIEESLDLLTPKAAEKAIELAYLFDPHTPNTIRGDITRLRQIL 1376

Query: 692  SKILSNAMDFSSKGS-TVILKAAR----------------DNGDFIFSVKNNGSSIPEDM 734
              +LSNA+ F+ +G  TV + + R                   + +F+VK+ G  IP D 
Sbjct: 1377 VNLLSNALKFTHQGEVTVSVSSKRVSPQSLEQLSHRTNKEQQYEILFAVKDTGIGIPPDR 1436

Query: 735  CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F        R   G GLGL I +    + GG + + S     +     I
Sbjct: 1437 LDRLFKAFSQVDSSTSRHYGGTGLGLVISKRLSEMMGGRIWVESEVGKGSIFYFTI 1492



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 21/184 (11%)

Query: 392 WHLPNGQTLHVIVTSNPRGGT-------IWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           +H  NG T++++  +  +  T       +    ++T +   E         + + I+ + 
Sbjct: 507 FHHKNGSTVYILSRAIHQKDTADRVIRMVGTHTDITDRKQAEATLQAEYSFKTQLIERMG 566

Query: 445 EGVAVFG-----PDGRIKLSNPAFRSLWKT-------EENRLSPGTHIRNIAATCSRYYN 492
           EGV V       P  R  + N     +               +     +  +    R   
Sbjct: 567 EGVCVCHSIETYPYIRFTVWNQQMVEITGYTVDEINRRGWYQTFYPDPKQRSQAVKRVAQ 626

Query: 493 ESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
              G DL A    I   D   + L  +   +  S  +  I+ L    T           +
Sbjct: 627 MQRGEDLVAEEWDIVRADGSHRILSISTSRIETSENQTHILALIQDVTERLHSETASQQQ 686

Query: 551 AERA 554
           AER 
Sbjct: 687 AERE 690


>gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 370

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 163/364 (44%), Gaps = 5/364 (1%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     I+  ++ +     DG I   N          ++ L     I +I    + 
Sbjct: 2   KESEERFRTVIELAADAIIAHDFDGDIVYVNELAYENLGYTKSELLSMN-IMDI-EPYNE 59

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
            YN    +    +I  S+  E    +    +    V    I        +    ++T   
Sbjct: 60  NYNSRKRYRNKLSIHNSYRIETSHERKYGSIYPVEVKITRIDLDSEPVILGFCRDITTRK 119

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE  L           + K+  + +VS+ELR+PLT+IIGF+D++   K G LN+ Q  Y
Sbjct: 120 QAEENLIIAKLEAEATSQAKSELLANVSHELRTPLTSIIGFSDIMLKGKAGKLNNNQINY 179

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S   LL+L+ND+LDL+ +++G M+L+Y  I L +++ ++   ++    E  + +
Sbjct: 180 LNKIHKSGQNLLDLINDLLDLSKIESGKMELHYEKISLTEIIEDLMAKLSPLASEKGLTL 239

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +  +     D  +L QI   ++ NA+ F++ GS +  +    + ++ FSV + G  
Sbjct: 240 DSKINPDIEYVCMDNIKLRQILYNLIYNAIKFTNNGS-ITTEVDFVDNNYQFSVIDTGIG 298

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPED    +F  F       +RR  G GLGL++V+  + +HGG++ + S     +     
Sbjct: 299 IPEDKQDEIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEIHGGYIEVESKYGEGSRFTFT 358

Query: 788 IPSK 791
           IP +
Sbjct: 359 IPMQ 362


>gi|294645581|ref|ZP_06723274.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|292639026|gb|EFF57351.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
          Length = 622

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 114/627 (18%), Positives = 250/627 (39%), Gaps = 47/627 (7%)

Query: 177 ELAETTLKCKKLSNHISVFKV-----------------LFDSLDFL--VWHRDQAGDILW 217
           +L     + ++L   +S+ +                  + DSL  +  V+++++ G  + 
Sbjct: 13  QLEALKKENEQLKKELSILRNENISNRPVSFKEKYAVRILDSLPDMLTVFNQNEVGIEVV 72

Query: 218 ANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           +N         N + +G+  ++ +        + I   M  + +             +G 
Sbjct: 73  SNEETNHVGISNKDFKGMYMREMVPPEA---YQNIHSNMRQAVSTGAVSTAHHELDFNGE 129

Query: 274 NKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           +  Y+  +  L+      +  D+++ +T   QL     +L  ++ +I    ++  L + N
Sbjct: 130 HHHYENRIFPLDEEYVLIMCRDITERVTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYAN 189

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSA--NKLPEQLNWKTWKENIFSVYKSSETHKD 390
           + F+E + +          +  +    + A   +L E  +         +  +  E  K+
Sbjct: 190 KQFIEEYGVTQQMGIQKIYDLPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGED-KE 248

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             H    Q    ++  N    T +  +++T  +  + +   L  +    ++++   + V 
Sbjct: 249 RMH----QVSTFLIRENNEELTWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVK 304

Query: 451 GP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            P  D R    N AF        ++    T      +         D  +L        D
Sbjct: 305 DPENDFRYLYWNKAFADHSGIPASKAIGHTDYEVFPSHGDAEKFRKDDLELLQT-HKRID 363

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNEALRKAD 566
            +   L  T +      L+ +++P+   + +      ++T+    E+ L +      ++D
Sbjct: 364 MQETYLSVTGKARIVQTLK-ALVPMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSD 422

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL          ++  Y   I+ +S ILL L+ND
Sbjct: 423 RLKSAFLANMSHEIRTPLNAIVGFSQLL---PAAETAEEKKLYSGIINQNSDILLQLIND 479

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ ++AG ++     + L ++   +      ++ E  + +   ++ +      D+ R
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNR 538

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+ +  L+NA  F+  G  + L   R + +    VK+ G  I  +    +F RFV   
Sbjct: 539 IMQVITNFLTNASKFTYAGE-IRLGFERTDKNIRVYVKDTGIGIEPEKVDHIFERFVKLN 597

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVS 773
              Q  G GLGLSI +  I   GG + 
Sbjct: 598 SFAQ--GTGLGLSICQMIIEKIGGEIG 622


>gi|148251757|ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146403930|gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 745

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 148/367 (40%), Gaps = 16/367 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +      +   + + +   DG I   N A+  +   +   L       ++    
Sbjct: 102 ELQEAEQRARSLFEQQGDLIVMRESDGTIIFVNDAYCRMAGLDRENLLGSQFSFDLLEQG 161

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S          T   D+R         ++             A       +VTD
Sbjct: 162 DSALEPSG---------TRVHDQRIDSAIGPRWIAWREALVRSDAGHPAVQQCVGRDVTD 212

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               ERAL E  +    A+  K+ F+   S+E+R+PL  I+G + LL  ++   L  +Q+
Sbjct: 213 RTETERALAEARDQANAANRAKSRFLAMASHEIRTPLNGILGMSGLLLETQ---LTPEQT 269

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y + + +S   L++L+N++LD + ++AG + L      L  L+ E+ + +A +     +
Sbjct: 270 TYAKAVRSSGEALMSLINELLDYSKIEAGKLALEAQPFALTALIEEITELLAPRAQGKQL 329

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARDNGDFIFSVKN 725
            I    D +L ++V  D  RL Q+   +  NA+ F+SKG   ++ +      +  F V++
Sbjct: 330 EIAAYLDERLPTWVTGDAARLRQVLLNLAGNAIKFTSKGGVALIAEPGIWPNEISFQVRD 389

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  D  + +F  F            G GLGL+I +  +   GG +++ S     +T
Sbjct: 390 TGIGIAADAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRIALQSQPGAGST 449

Query: 784 INCRIPS 790
               +P 
Sbjct: 450 FEVSVPL 456


>gi|302337068|ref|YP_003802274.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634253|gb|ADK79680.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 1052

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 114/654 (17%), Positives = 249/654 (38%), Gaps = 61/654 (9%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
              L+ +       +   ++ +  +  FK         ++  D+ G I + N ++++ T 
Sbjct: 325 FSELETMRKVFNRLSKTIRQKTLSLIEFKRAVREAGHAIYMTDREGIITYTNPAFERIT- 383

Query: 228 TEGIVFQKAIGESRKLFKEEI-----KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
             G  +++A G++  +    +       R+  S    + + E +   +  +   Y   + 
Sbjct: 384 --GYSWEEAEGKTPNILNSGMMPESYFARLWESILAGELWEEEIINRKQ-DGTIYYAHQT 440

Query: 283 LNS-FGEAGIAI-------DVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRY-LQ 329
           +   F + G+ I       DV+++     +L  +  +  NL      +I + +     + 
Sbjct: 441 IAPIFSDFGMVISFVAIQNDVTQQRESERRLWESETLYRNLFETAADSILLINPETLGIS 500

Query: 330 FHNRSFVELWEID------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
             N++ +E           L++L   P + +  + ++   +   + +  T+     +  K
Sbjct: 501 ECNQATIESLGYGKDEIKQLSYLDIQPPDHQ--QRVKELVQGISEFDQATFDTQHTT--K 556

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           + E  +   H+     L++          + +  ++T +   E       +      ++ 
Sbjct: 557 TGELREVNVHM---TLLNLDQRKL----LLAIMHDVTERRQAERTIQQSERKYRMLAENS 609

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           S+ ++   P G     +PA   L   E+  L  G  +  I            G +   + 
Sbjct: 610 SDMISQHAPGGIYLYVSPACIRLLGYEQEELL-GRQVEEIIHPEDIERVIEIGKNHLGSP 668

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
                     +Q   +  S +  E       + + +    ++++ +  ER L        
Sbjct: 669 SERITTLVYRIQK--KDGSYTWFETHSRRTDSQEIIAISRDISERIAMERGLE------- 719

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A++ K+ F+ ++S+E+R+PL  ++GF DL+  +   + + K  +Y   I  S   LL L
Sbjct: 720 EANKAKSMFLANMSHEIRTPLNAVLGFNDLIARN---TSDPKLKEYAAQIDLSGKNLLTL 776

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           + DILD + V+AG ++ NY     + L+ E+      +  +  I +       +      
Sbjct: 777 IGDILDFSKVEAGGVQFNYDFFSPHHLVREIIALFEMEAKKRGIDLITKERTPIPKQIKL 836

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST------VILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           D  R+ QI   ++SNA+ F+ KGS         +K      +  FSV + G  IPE    
Sbjct: 837 DEDRVRQILINLVSNALKFTEKGSVCLEIHAAYIKQKDQRCNLTFSVIDTGIGIPEKEQH 896

Query: 737 SVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F  F         +  G GLGL+I ++      G + + S+    +T     
Sbjct: 897 VIFEAFRQQEGQSTRKYGGTGLGLAISKNLAEGMEGSIDVKSNVGSGSTFTLSF 950


>gi|168705275|ref|ZP_02737552.1| sensory transduction histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 551

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 127/244 (52%), Gaps = 4/244 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R    L   N AL +++ +K+ F+  +S+ELR PL +IIGF+++L  ++  +L  KQ
Sbjct: 282 DLDRKVDELARVNMALFESNRLKSEFLSTMSHELRDPLNSIIGFSEVLIAAE--NLTEKQ 339

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y   I  S   L  L+NDIL+LA ++AG M+L+                I  +  + N
Sbjct: 340 QRYAGNIMTSGQRLTALINDILELAKLEAGKMRLHPEPFNAAAACEHAAAQIRPQAEKKN 399

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I ++V +D    +   D  ++ QI + +LSNA+ F+ +G  V LKAA D  D + +V + 
Sbjct: 400 IDVRVAADPHAPATRQDAGKVHQIITNLLSNAVKFTPEGGRVTLKAATDGTDLVLTVTDT 459

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    +F +F   A+    ++ G GLGLSIV     L GG V++ S     +T 
Sbjct: 460 GVGIAPEEQDLIFEKFRQAANPMTREQGGTGLGLSIVRELAKLLGGDVTVHSELGRGSTF 519

Query: 785 NCRI 788
             RI
Sbjct: 520 TVRI 523


>gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 2161

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 171/388 (44%), Gaps = 22/388 (5%)

Query: 415  MFENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  ++ T + +L ++           +  L EGV V   D  I L N A   +       
Sbjct: 1773 IINDIATERGNLWSQQREENSKNQAILQSLGEGVIVVDGDQNIVLYNAAAEQILGVPAQF 1832

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAI---ITSFDDERKSLQGTLELLSDS---VLE 527
            +     +  IA  C+          ++  +   + +  + +K+    LEL   +   +L 
Sbjct: 1833 VVK-QPLSRIAEYCAGDGASERACRIYEGLRQGLQALTEAQKNHNRMLELPEPTQSILLN 1891

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            ++    P      + V + D  R   A           D  K  F+ +VS+ELR+PLT+I
Sbjct: 1892 FAPWVGPRNAMYGSVVVIHDITREVEA-----------DRAKREFISNVSHELRTPLTSI 1940

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             G+ DLL  +    LN +Q  Y+  + +++  L+NL+NDIL++  +D   + L +  I +
Sbjct: 1941 KGYVDLLMLNPKWKLNEEQLSYLSVVKSNTHRLMNLINDILEIGRIDDNKVGLTFKHISI 2000

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              +  EV +++  ++    +   +         +AD  RL Q+   + SNA+ ++    +
Sbjct: 2001 GAIFEEVNKTLRAEIERKRLSFSIEVADHTPPVMADETRLTQVVLNLASNAVKYTYPEGS 2060

Query: 708  VILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
            V L+A  +  G     V +NG  I  +  + +F RF    +  R +  G GLGLSI +S+
Sbjct: 2061 VKLRAGLNPAGLLQVDVIDNGVGISPEQQQHLFRRFYRADNPLRDEAGGTGLGLSIAKSY 2120

Query: 765  INLHGGHVSISSSDEGVTTINCRIPSKE 792
            + +HGG + + S     +T +  IP  +
Sbjct: 2121 VEMHGGQMWVESEPGKGSTFSFIIPLTQ 2148



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 53/141 (37%), Gaps = 8/141 (5%)

Query: 300  TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               ++ +    IL +L   + + D ++ +  +N +  ++  +   F+   P    + E+ 
Sbjct: 1787 QQREENSKNQAILQSLGEGVIVVDGDQNIVLYNAAAEQILGVPAQFVVKQP-LSRIAEYC 1845

Query: 360  RSANKLPEQ-LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV------IVTSNPRGGT 412
                        ++  ++ + ++ ++ + H     LP      +      +   N   G+
Sbjct: 1846 AGDGASERACRIYEGLRQGLQALTEAQKNHNRMLELPEPTQSILLNFAPWVGPRNAMYGS 1905

Query: 413  IWMFENLTVQVDLETKYNTLV 433
            + +  ++T +V+ +      +
Sbjct: 1906 VVVIHDITREVEADRAKREFI 1926


>gi|147679019|ref|YP_001213234.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146275116|dbj|BAF60865.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 589

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 168/392 (42%), Gaps = 26/392 (6%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V VTS+   G +   F  L   +D   +  +         + +++EGV      G++ L
Sbjct: 213 RVEVTSDDEVGRLAEDFNYLAASLDQTVSALSHEKGKIENILANMTEGVLAVDGRGQVIL 272

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +N A     K +   L        +    S          LF+A+  S   E +S +  +
Sbjct: 273 ANGAISRTLKVDPAEL--------LGRPVSELSCCPGLAGLFSAVAGS--GEPRSAEFEM 322

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +     VL   + PL  A      V V   +   R L          + ++  FV +VS+
Sbjct: 323 DGGRTFVL-AHLAPLREAGGSYGAVGVLQDITELRKL----------ELLRRDFVANVSH 371

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT+I GF + L    +G   +++  Y++ I   +  L  L+N++LDLA +++G +
Sbjct: 372 ELRTPLTSIQGFLEALMDGTIGESQARER-YLKVIHQETLRLNRLINELLDLAQIESGKV 430

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +   + I +  L+  V   +  ++  + I +       L   + +  R+ Q+ + +L NA
Sbjct: 431 RWEINPIDVPSLVGRVILKLKPQIERHQITVVPEMPEGLPLMLGNEDRIEQVLTNLLENA 490

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + +S  GSTV ++AA   G     V + G  IP +    ++ RF        R   G GL
Sbjct: 491 VRYSPPGSTVTVRAAGREGKITVEVADRGPGIPPEDLPHIWERFHRVEKSRSRSLGGTGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+IV   I  HGG V + S     +  +  +
Sbjct: 551 GLAIVRQIIEAHGGQVDVQSEAGQGSVFSFTL 582



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 82/287 (28%), Gaps = 39/287 (13%)

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
           +   ++      NF + V            + R+   F     ++D +    ++ +    
Sbjct: 197 QMSAVTREMARGNFRQRVEVTSDDE-----VGRLAEDFNYLAASLDQT-VSALSHEKGKI 250

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             IL N+T  +   D    +   N +     ++D A L   P              + E 
Sbjct: 251 ENILANMTEGVLAVDGRGQVILANGAISRTLKVDPAELLGRP--------------VSEL 296

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQ 422
                      +V  S E     + +  G+T  V+    P        G + + +++T  
Sbjct: 297 SCCPGLAGLFSAVAGSGEPRSAEFEMDGGRTF-VLAHLAPLREAGGSYGAVGVLQDITEL 355

Query: 423 VDLETKYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
             LE      V          +  + +G      DG I  S    R L    +  L    
Sbjct: 356 RKLELLRRDFVANVSHELRTPLTSI-QGFLEALMDGTIGESQARERYLKVIHQETLRLNR 414

Query: 479 HIRNIAAT-------CSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            I  +               N  D   L   +I     + +  Q T+
Sbjct: 415 LINELLDLAQIESGKVRWEINPIDVPSLVGRVILKLKPQIERHQITV 461


>gi|317472683|ref|ZP_07931998.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899860|gb|EFV21859.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 940

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +  + E        K+ F+  +S+E+R+P+  I G TDLL+  +   L     + ++ 
Sbjct: 551 RIMQSELEKAEAKSRAKSEFLSQMSHEIRTPMNAITGLTDLLRMEE--KLPDGAREKLQK 608

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I ASS  +L+L+NDILD++ ++ G + +      L +LL+ + + +  +  E  I  + +
Sbjct: 609 IHASSQYMLSLINDILDMSKIENGKLNIEPEDFSLTELLDGLIEMMEVQAEEKQIHFEFV 668

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNG 727
            + +      D  RL Q+ + +LSNA  F+  G  V L    ++     G++ FSVK+NG
Sbjct: 669 REIEHDFVTGDPIRLRQVLTNLLSNAFKFTKHGGRVTLTVREEHRDVSTGEYFFSVKDNG 728

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I +D  K +F  F    A   +  G GLGL I  S I   GG++ + S     +    
Sbjct: 729 IGIAQDRQKQIFEAFEQLGASSARSEGTGLGLPISSSIIKAMGGNLMVESQTGKGSEFYF 788

Query: 787 RI 788
           R+
Sbjct: 789 RL 790


>gi|209526710|ref|ZP_03275233.1| multi-sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209492842|gb|EDZ93174.1| multi-sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 856

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 93/493 (18%), Positives = 181/493 (36%), Gaps = 51/493 (10%)

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            +     ++ ++       PS D L++++          +    +  I         +  
Sbjct: 371 WSDQLYRIFGVNPQ--QVTPSIDSLMQYIHHQ-------DRPRVENAISQAISEQIPYSI 421

Query: 391 TWH--LPNGQTLHV----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +    P+GQ   V    IVT           +++T +   E       +          
Sbjct: 422 DYRIARPDGQERFVVEQAIVTPT---HITSTVQDITERKRAEIALRASEERFSRVFKASP 478

Query: 445 EGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            G+++    +GR    N +F         ++       ++    +   N           
Sbjct: 479 IGISITTVEEGRFVDVNDSFLQQLGWSREQVID-RTFEDLEMWDAEQINPILQRITNGDR 537

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +++   + +   G +    D ++    I L N   +L   +     +    L    EA  
Sbjct: 538 LSNLTVQVRHKSGAIR---DWLIAIEPIQLENTPCLLILASDITEHKQAEELRRAKEAAE 594

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A++ K+ F+ ++S+ELR+PL  I+G+++LL+              ++ I  +   LL L
Sbjct: 595 QANQAKSLFLANMSHELRTPLNAILGYSELLQEDAEDLGQDDWVADLKNIHVAGQHLLTL 654

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++DILD + ++AG M  +     +N LL EV+ +IA    +N+ +  +     L     D
Sbjct: 655 ISDILDFSKIEAGRMNFHLEKCQINTLLWEVETTIAPLADKNHNQFTLEVAPGLDLMYTD 714

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-------------------------GD 718
             ++ Q    +LSNA  F+ +G  V L+  +                             
Sbjct: 715 LTKVRQSLLNLLSNACKFTEQG-QVTLRVWKQLIPATDLPDLPVYHSLESPEEELSEIPF 773

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V+++G  + E    +VF+ F        R   G GLGLSI      + GG + + S
Sbjct: 774 IFFQVQDHGIGMNERQIATVFSPFTQADESTTRKYGGTGLGLSITHKLCQMMGGDLWVES 833

Query: 777 SDEGVTTINCRIP 789
                +T   R+P
Sbjct: 834 ELNKGSTFTMRLP 846


>gi|254413405|ref|ZP_05027176.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180025|gb|EDX75018.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 689

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 160/381 (41%), Gaps = 32/381 (8%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           LE +           I++L +G+ V    G+I   NPAF  +    E  ++         
Sbjct: 73  LEGRVEERTAHLTAIINNLVDGLLVTDTQGKISQFNPAFLRMLGLGELDIT--------- 123

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
               +   +    +L   +  + +  R+     ++L    + +     +     +     
Sbjct: 124 ---DKKGQDILNSELVELVTQTQNHHREVFTAEIDLAGGRIGKAVATAI---DKVALADG 177

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +       L       ++ D++K  F+  VS+ELR+PLT+++GFT ++K      +  
Sbjct: 178 AVEEFLGSVILIRDITVEKEVDQMKTDFISTVSHELRTPLTSVLGFTKIIKKKLEDVIFP 237

Query: 605 KQS--------------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +                  V  I +    L  L+ND+LD+A ++AG +  N   ++++++
Sbjct: 238 QVQTDNKKIQRTVRQVKDNVTIIVSEGERLTALINDVLDIAKMEAGKVDWNMQPLLVHEI 297

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +     + ++     +I+     + +L     D+ RL+Q+   ++SNA+ F+ KG T+  
Sbjct: 298 IERAIAATSSLFETKHIQFIKKVETELPEISGDKDRLIQVLINLISNAVKFTQKG-TITC 356

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
           +A + + + I SV + G  I       VF +F         + +G GLGL I +  +  H
Sbjct: 357 RATQRHSEIIISVIDTGMGIAPADQPQVFEKFKQVGDTLTDKPKGTGLGLPICKQIVEHH 416

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG + + S  +  +T +  +P
Sbjct: 417 GGRIWVESEFKKGSTFSFTLP 437



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  V ++  H   I++NL   + + D    +   N +F+ +  +    +      D L  
Sbjct: 74  EGRVEERTAHLTAIINNLVDGLLVTDTQGKISQFNPAFLRMLGLGELDITDKKGQDILNS 133

Query: 358 FLRSANKLPEQLNWKTWKENIF----SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
            L       +  + + +   I      + K+  T  D   L +G     +       G++
Sbjct: 134 ELVELVTQTQNHHREVFTAEIDLAGGRIGKAVATAIDKVALADGAVEEFL-------GSV 186

Query: 414 WMFENLTVQVDLET 427
            +  ++TV+ +++ 
Sbjct: 187 ILIRDITVEKEVDQ 200


>gi|148977367|ref|ZP_01813967.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3]
 gi|145963319|gb|EDK28584.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3]
          Length = 1424

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 105/508 (20%), Positives = 207/508 (40%), Gaps = 36/508 (7%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL--WEIDLAFLATNPSNDE 354
             E  +  Q+     +L+ +   I + D    L   N     L  +++    +  NP  D 
Sbjct: 543  AESALKHQVEFERSLLNAMPFPIVVRDLENQLVSFNSVARALKDFDLIEEAIINNPDEDA 602

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            +   +   N LP     +  KE +         +    ++ NG             G++ 
Sbjct: 603  M---IHKGNVLP-----RLEKEVVSPFGSKHYAYWKCPYISNGSI----------EGSVT 644

Query: 415  MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            + ++LT   + +    +      +  ++L  G  +     +  L +  F  +    E  L
Sbjct: 645  ILDDLTELYEAKKIAKSADDRVQKLANNLH-GAVIQHIQPKRSLHDIEFVFISNGIEELL 703

Query: 475  S-PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                + +R    +     N  D   L   I     D + SL   + + + +        +
Sbjct: 704  GLTPSQLRRSPTSFFAPLNAKDRRTLIRKIRCGNKDGKLSLDIGVNIENQNRWLNLQSKI 763

Query: 534  PNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             +      +     ++T+  + +  LT+  ++   A E K+ F+ ++S+E+R+PL  I+ 
Sbjct: 764  SDRGDYYEWDSVLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVS 823

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              +L +  ++G    +  +    +S S+  LL++VNDILD + ++AG + L+Y    L+ 
Sbjct: 824  LLELSEQYEVGH---EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDT 880

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG--- 705
            L   V Q  A + H   ++ K   D +L  S + D  RL Q+ + +LSNA+ F+  G   
Sbjct: 881  LTLRVTQLQARQAHAKGLQFKFWLDPELKDSVLMDDIRLGQVLNNLLSNAIKFTEHGTVG 940

Query: 706  -STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
             +T ++          F V ++G  I E+  +++F  FV        +  G GLGL+I +
Sbjct: 941  LTTKLVSQNDGQQQVCFEVFDSGIGISEEHIRNLFRPFVQADEGTTRKYGGSGLGLTISK 1000

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIPS 790
              I   GG +++ S     +T    +P 
Sbjct: 1001 QLIEQMGGTLNVISKVNLGSTFTISVPL 1028



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 125/386 (32%), Gaps = 51/386 (13%)

Query: 71  KYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE-NWLKFHHYIKLSK 129
           +  SLL+++N + + +  +    EI+G +  +             + NWL   +   +  
Sbjct: 447 RVISLLSKDNDVPVAYSVEANQ-EILGNIINKALFAIPHHKFQQIKKNWLDVSYESGVDT 505

Query: 130 ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189
               L   G +  +   +    AI          A+   LS      E+ +       L 
Sbjct: 506 KDVIL---GAAILISVASVLIMAI---------MAWSWKLS-----REVEDRKRAESALK 548

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
           + +   + L +++ F +  RD    ++  N   +   + + I           +     +
Sbjct: 549 HQVEFERSLLNAMPFPIVVRDLENQLVSFNSVARALKDFDLIEEA--------IINNPDE 600

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF---GEAGIAIDVSKEITVNDQLT 306
             MI    +     + V +     + +Y     +++    G   I  D+++         
Sbjct: 601 DAMIHKGNVLPRLEKEVVSPFGSKHYAYWKCPYISNGSIEGSVTILDDLTELYEAKKIAK 660

Query: 307 ----HTYEILHNLTVAIAIF-DQNRYL-----QFHNRSFVELWEIDLAFLATNPSNDELL 356
                  ++ +NL  A+       R L      F +    EL  +  + L  +P+     
Sbjct: 661 SADDRVQKLANNLHGAVIQHIQPKRSLHDIEFVFISNGIEELLGLTPSQLRRSPT--SFF 718

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPN-GQTLHVIVTSNPRGGTIW 414
             L +        + +T    I    K  +   D   ++ N  + L++    + RG    
Sbjct: 719 APLNA-------KDRRTLIRKIRCGNKDGKLSLDIGVNIENQNRWLNLQSKISDRGDYYE 771

Query: 415 MFENLTVQVDLETKYNTLVKVQGETI 440
               LT   +L+ +   L + +   I
Sbjct: 772 WDSVLTDITELKQQQEELTQARQSAI 797


>gi|283850576|ref|ZP_06367864.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574147|gb|EFC22119.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 642

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 152/386 (39%), Gaps = 26/386 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE       +     ++H  + +A F    R+   NP   +        L      
Sbjct: 127 ERKRLEQALYRREQESKALVEHAPDIIARFDRAHRLLYVNPVVEAATGVAPADLIGKPLA 186

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQ-- 537
                   R   E     +FA        E + L+G +     D   E        A   
Sbjct: 187 SFGVVEADRPKAEETLRHVFAT------GEDQVLEGRIGNRGGDRTYEIRFAAEMGADGR 240

Query: 538 ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++      E    +  E   +A+  K+ F+ ++S+E+R+P+  I+G   L 
Sbjct: 241 VETVLAVARDIAKRKALENEARQAREEAEQANRAKSEFLANMSHEIRTPMNGIMGMIHL- 299

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++L S++   S+Y++    S+  LL +VND+LDL+ ++AG ++L      L   +  V
Sbjct: 300 --ARLKSVDPAISEYLDLADKSALHLLGIVNDVLDLSKLEAGKIRLFRKRFSLRKEVEAV 357

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +       + ++ +       L  S V D  RL Q+ + ++ NA+ F+  G  + L+  
Sbjct: 358 VEPFRVAAGKKDLGLAHTVAPDLPDSIVGDAGRLRQVLTNLVGNALKFTPSG-RIDLRVE 416

Query: 714 RDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           R           F F+V + G  IP      +F  F       Q    G GLGL+I    
Sbjct: 417 RAGESAAGGPQLFRFTVTDTGIGIPAVRFAHIFESFEQAHTSAQALFGGTGLGLTISRQL 476

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           + L GG ++++S++   +  +  +P 
Sbjct: 477 VELMGGEITVASTEGEGSVFSFTLPL 502



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 19/158 (12%)

Query: 291 IAIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            AI+  + E  +  +   +  ++ +    IA FD+   L + N        +  A L   
Sbjct: 124 YAIERKRLEQALYRREQESKALVEHAPDIIARFDRAHRLLYVNPVVEAATGVAPADLIGK 183

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVTSN 407
           P        L S   +  + +    +E +  V+ + E       + N  G   + I  + 
Sbjct: 184 P--------LASFGVV--EADRPKAEETLRHVFATGEDQVLEGRIGNRGGDRTYEIRFAA 233

Query: 408 PRGG------TIWMFENLTVQVDLETKYNTLVKVQGET 439
             G        + +  ++  +  LE +     +   + 
Sbjct: 234 EMGADGRVETVLAVARDIAKRKALENEARQAREEAEQA 271


>gi|260102099|ref|ZP_05752336.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
 gi|260084086|gb|EEW68206.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
          Length = 619

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 172/421 (40%), Gaps = 38/421 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKY-NTLVKVQGETID 441
            E  K   H+ NG  +  V + SN   G +   F  L+V+++   +  ++  +     + 
Sbjct: 212 EEMQKQALHIANGDYSSQVKIYSNDELGQLAKAFNTLSVRIEQSQEESDSERRRLDSVLS 271

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    S    +E+ +     I  +         ++   DL +
Sbjct: 272 HMSDGVLATDRHGNVSVVNHMALSYLNADEDEIIN-RPIAEVLG-----LKDTSSQDLIS 325

Query: 502 AIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +        +K +  T++     + +L  S   +      ++          E+      
Sbjct: 326 S--------QKEIVVTVKPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTEQQ----- 372

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K +  +  FV +VS+ELR+PLT++  + + L             +++E     ++ 
Sbjct: 373 ----KNENSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKD-PEIAPKFLEVAQQETSR 427

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-------KMHENNIRIKVI 672
           ++ ++ND+L L+ +D G+ K++   + LND ++ +             K H+    IK  
Sbjct: 428 MIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRE 487

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D  +++Q+   I++NA+ +S  G  + ++     G  I S+ + G  IP 
Sbjct: 488 LGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPR 547

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P 
Sbjct: 548 KDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPY 607

Query: 791 K 791
           +
Sbjct: 608 E 608


>gi|149181690|ref|ZP_01860183.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148850668|gb|EDL64825.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 590

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 164/419 (39%), Gaps = 32/419 (7%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKV 435
            I +  +              +T   I+T +  G     F  +  Q++      +   + 
Sbjct: 197 RITAPLRKMREAAFEVARGRFETKVPILTHDEIGELATAFNQMGNQLNYNMHALSQEKEQ 256

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV  F  DG I ++NP      +        G     I  T         
Sbjct: 257 LSSILSSMADGVITFNRDGTILITNPPAERFLQQWYYE-QEGNEQEAIPTTL-------- 307

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +L   +I   +++   +      L        + PL N + +   V V   +  ER L
Sbjct: 308 -KELLEQVILLENEQTGEVS-----LQGRSYVVIVSPLYNEEYVRGAVAVVRDMTEERRL 361

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     D+++  F+ +VS+ELR+P+  + G+++ +    +     ++ +  + I  
Sbjct: 362 ----------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDD-IAESEEEKKEIAKIIYD 410

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  +  LVND+LDLA ++AG + L      ++  L  V         E NI +  I   
Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHITLKKEKSDISTFLERVTNKFQGIAKEKNIGLNFIGHK 470

Query: 676 ---KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                     D  R+ Q+ + ++ NA+  + +  +V +         +  V ++GS IPE
Sbjct: 471 TGLNSQQIYIDPDRIEQVLTNLIDNALRHTPETGSVSVNYKPTKSGILVEVSDSGSGIPE 530

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    VF RF        R   G GLGL+I ++ I+ H G +S+ S  +  TT +  +P
Sbjct: 531 EDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIIDSHNGQISVHSKVDQGTTFSFFLP 589


>gi|303248480|ref|ZP_07334738.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490100|gb|EFL50020.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 667

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/500 (19%), Positives = 191/500 (38%), Gaps = 45/500 (9%)

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           L+    I D        N +F  L       +    +         S +   + +     
Sbjct: 38  LSDPFYIKDPQGRFTLVNDAFCTLAGRSREDILGRDAPSVFPGRAGSPSLKNDAMVMACG 97

Query: 375 KENIFS--VYKSSETHKDTWHLPNGQTLHVIVTSNPRGG--TIWMFENLTVQVDLETKYN 430
            E++     + + + H+        + LHV    +P GG   + +  ++T +   E    
Sbjct: 98  FEDVAEETAFDADDRHRVFMTR---KALHV----DPDGGRHVVGLIRDITNRKQAERALF 150

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-------HIRNI 483
                    ++  +EG+ V     R   +N     +       ++            R++
Sbjct: 151 ASEARYRRIVETANEGIWVVNEHWRTVYANAVMGFMLGLTPEEMADRPVSDFLFPEDRDL 210

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                R  +   G  L+   +   D +   +   +    D+   ++        ++  F 
Sbjct: 211 HRAMLRRESLPPGGGLYERRLRRADGQEIWVLIAVSSEYDASGHFT-------GSVGMFS 263

Query: 544 NVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           N+T+  RAE +L      L  A        + K+ F+ ++S+E+R+PL  ++G   LL+ 
Sbjct: 264 NITERKRAEESLRLSETRLAAAKEAAETASKAKSEFLANMSHEIRTPLNGLLGMLQLLED 323

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L++ Q   V     S   L  L+ DILDL+ V++G + L Y+   L ++   ++ 
Sbjct: 324 T---DLDADQRDCVVTALDSGRRLTRLLTDILDLSRVESGKLALVYAPFSLREVFASIQT 380

Query: 657 SIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             AT + +  + ++  +S       + D  R+ Q+   ++ NA+ F+  G  + L+A   
Sbjct: 381 VFATSLEQRGLTLEPTVSPAVPAMLIGDEGRIRQVLLNLVGNAIKFTRTGG-IFLEAGSS 439

Query: 716 NG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                     I SV + G  IP +  K+VF  F        R  +G GLGLSIV+  + L
Sbjct: 440 PDPETGKVRLILSVGDTGIGIPREKIKAVFEAFTQVDASNTRIHQGAGLGLSIVDRLVRL 499

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G + + S     T + C 
Sbjct: 500 MDGQLWMDSEPGIGTCVMCT 519



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 75/271 (27%), Gaps = 36/271 (13%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK-LFKEE 247
            +H  +   +  +L    + +D  G     N ++       G   +  +G     +F   
Sbjct: 25  QSHALLLDRVVGALSDPFYIKDPQGRFTLVNDAF---CTLAGRSREDILGRDAPSVFPGR 81

Query: 248 IKKRMISSSA-----------LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
                + + A            E  F            K+  +          G+  D++
Sbjct: 82  AGSPSLKNDAMVMACGFEDVAEETAFDADDRHRVFMTRKALHV-DPDGGRHVVGLIRDIT 140

Query: 297 KEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
                   L         I+      I + +++    + N     +  +    +A  P +
Sbjct: 141 NRKQAERALFASEARYRRIVETANEGIWVVNEHWRTVYANAVMGFMLGLTPEEMADRPVS 200

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--- 409
           D L          PE  +         S+      ++      +GQ + V++  +     
Sbjct: 201 DFLF---------PEDRDLHRAMLRRESLPPGGGLYERRLRRADGQEIWVLIAVSSEYDA 251

Query: 410 ----GGTIWMFENLTVQVDLETKYNTLVKVQ 436
                G++ MF N+T +   E          
Sbjct: 252 SGHFTGSVGMFSNITERKRAEESLRLSETRL 282


>gi|227891714|ref|ZP_04009519.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC
           11741]
 gi|227866517|gb|EEJ73938.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC
           11741]
 gi|300213969|gb|ADJ78385.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 627

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 165/396 (41%), Gaps = 36/396 (9%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+++V+   + +   + +    + H+S+GV      G I + N    +   
Sbjct: 245 GQLAQAVNNLSIRVEETQELSESERRRLDSVLSHMSDGVIATDRRGGITIVNDMAMNYLD 304

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E  +  G  I +I    ++Y            ++   D+    + G  +L+ ++   +
Sbjct: 305 ISEGEVL-GKSILDILDIRNQY--------TLRDLLEKQDEVVLDMSGEKDLILNAY--F 353

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 354 SVIQRESGFISGIVCVLHDVTEQQ-----------KIDRERKQFVSNVSHELRTPLTSMR 402

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             ++++     +  ++ ++ND+L L+ +D+G +KL+   + +N
Sbjct: 403 SYIEALNDGAWRD-EKVAPEFLKVTQDETDRMIRMINDLLSLSRMDSGTVKLDLELVNIN 461

Query: 649 DLLNEVKQSIATKMHE----------NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+N +       + +           N  IK     +      D  + +Q+   I++NA
Sbjct: 462 GLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVELDTDKFIQVVDNIMNNA 521

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           + +S  G  +  +    + + I S+ + G  IP+     VF+RF  V  A    + G GL
Sbjct: 522 IKYSPDGGVITCRLLETHNNVILSISDQGLGIPKKDLGHVFDRFFRVDKARSRAQGGTGL 581

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I +  I LH G + + S +   +T    +P +E
Sbjct: 582 GLAISKEVIELHHGRIWVDSVEGKGSTFYISLPYEE 617


>gi|323465649|gb|ADX69336.1| Sensor protein [Lactobacillus helveticus H10]
          Length = 618

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 170/422 (40%), Gaps = 40/422 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKY-NTLVKVQGETID 441
            E  K   H+ NG  +  V + SN   G +   F  L+V+++   +  ++  +     + 
Sbjct: 211 EEMQKQALHIANGDYSSQVKIYSNDELGQLAKAFNTLSVRIEQSQEESDSERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    S    +E+ +     I  +         ++   DL +
Sbjct: 271 HMSDGVLATDRHGNVSVVNHMALSYLNADEDEIIN-RPIAEVLG-----LKDTSSQDLIS 324

Query: 502 ---AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               I+ + D   +          + +L  S   +      ++          E+     
Sbjct: 325 SQKEIVVTVDPGTR---------DEIILHASFSLIKRVTGFVSGSVCVLHDVTEQQ---- 371

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K +  +  FV +VS+ELR+PLT++  + + L             +++E     ++
Sbjct: 372 -----KNENSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKD-PEIAPKFLEVTQQETS 425

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-------KMHENNIRIKV 671
            ++ ++ND+L L+ +D G+ K++   + LND ++ +             K H+    IK 
Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKR 485

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +      D  +++Q+   I++NA+ +S  G  + ++     G  I S+ + G  IP
Sbjct: 486 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIP 545

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P
Sbjct: 546 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605

Query: 790 SK 791
            +
Sbjct: 606 YE 607


>gi|227894304|ref|ZP_04012109.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
 gi|227863881|gb|EEJ71302.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
          Length = 621

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 170/419 (40%), Gaps = 34/419 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K   H+ +G  +  V + SN   G +   F  L+V+++  + + ++  +     + 
Sbjct: 214 EEMQKQALHIADGDYSSQVKIYSNDELGQLGHAFNTLSVRIERSQEESDSERRRLDSVLS 273

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    S    +E  +     I  +     R  +  D      
Sbjct: 274 HMSDGVLATDRHGNVSVVNHTALSYLNVKEKDVIN-KPIAEVLGLKDR--SSQDLISSQK 330

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            I+ + D+  +          + +L  S   +      ++          E+        
Sbjct: 331 EIVITIDEGTR---------DEMILHASFSLIKRVTGFVSGSVCVLHDVTEQQ------- 374

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K ++ +  FV +VS+ELR+PLT++  + + L             +++E     ++ ++
Sbjct: 375 --KNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKD-PKIAPKFLEVTQQETSRMI 431

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-------KMHENNIRIKVISD 674
            ++ND+L L+ +D G+ K++   + LND +N +             K H+    I     
Sbjct: 432 RMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKSHKKKYTINRELG 491

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D  +++Q+   I++NA+ +S  G  + ++  ++    I S+ + G  IP   
Sbjct: 492 SQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGIPRKD 551

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P +
Sbjct: 552 LGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGRGSTFYISLPYE 610


>gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1103

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/633 (17%), Positives = 230/633 (36%), Gaps = 72/633 (11%)

Query: 215 ILWANISYKKNTETEGIVFQKAIGESR-----KLFKEEIKKRMISSSALEKNFCETVSTL 269
           I +AN ++ K     G+   + IG +          ++    + S+     +    +   
Sbjct: 49  IFYANPAFLK---YYGLPSNQVIGRNIIEFYSHYLNDDHIAELHSAVHEATSHTTEICVN 105

Query: 270 EHGNNKSYKI--VRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHNLTVAIAIFD 323
           +       +I    +    G     I    D+S+   V  +L  + + L  L     + +
Sbjct: 106 QETKKGWLRINLEAMRKQGGGNHYLILNQADISQMKQVRQELKTSNQKLQQL-----VSN 160

Query: 324 QNRYL--------QFHNRSFVELWEIDLAF--LATNPSNDELLEFLRSANKLPEQLN--W 371
           QN+ +            ++   +  ++     L  N S   L E  +S     E  +  +
Sbjct: 161 QNQRINEQEVQMGVMFEQAVDNMLLLNAELKVLDVNDSALSLFEHSKSDLLGLELTSLLY 220

Query: 372 KTWKENIFSVYKSSETHKDT---WHLPNGQTLHVI--------VTSNPRGGTIWMFENLT 420
           +  + NI     S E +++      +   +T  V+        +T   +   +    +++
Sbjct: 221 EFTENNIEDKLSSVEMYQEVPLDEVIKVSRTSDVLSLLGSVRYITMKTQKYIVLTLRDIS 280

Query: 421 VQVDLETKYNTLVKVQGETIDHL-------SEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +   + +         E +  L         G+  +         +     ++  + + 
Sbjct: 281 KEQMAQNELRRSQSELEEVVRSLNLATQAGGIGIWSWDFTTNELSWDDRMYEIYGVDPDN 340

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                 +          +   +  +     +T F+ E +      E+     ++ +   L
Sbjct: 341 CKNNYTMWQERVLEEDIFTAEEALNKARENLTQFNSEFRIQLPDKEI---RWIKAAANVL 397

Query: 534 PNAQTML------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +             ++VT    A+  L  ++E    A E K+ F+ ++S+E+R+P+  +
Sbjct: 398 FDQDGTTPIGMGGINIDVTKEKNAQANLRHESEIALAASEAKSMFLANMSHEIRTPMNGV 457

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LL  S+   LN +Q   V  I  S+  LL+++NDILD + ++AG M L    + L
Sbjct: 458 VGMLSLLSESE---LNGEQKSMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVEL 514

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSK-- 704
             L+      +  + +   I + +  D  L   +  D  RL Q+   ++ NA+ F+    
Sbjct: 515 QKLIERTLDVLCLQANNKGIELYLTYDASLPKVIMSDSVRLSQVLLNLVGNAVKFTDSTD 574

Query: 705 --GSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
                V + A  +  D        +++NG  + E+  + +F  F        R   G GL
Sbjct: 575 EMKGKVWVSATLNQHDIAPYVEIIIEDNGIGMTEEQIEKLFKAFSQADTSTTRLYGGTGL 634

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI  S + + GG + + S     +  +  +P
Sbjct: 635 GLSITRSLLEMMGGDIHVDSRFGVGSRFSVELP 667


>gi|83944134|ref|ZP_00956590.1| probable sensor/response regulator hybrid [Sulfitobacter sp. EE-36]
 gi|83845001|gb|EAP82882.1| probable sensor/response regulator hybrid [Sulfitobacter sp. EE-36]
          Length = 1064

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 129/678 (19%), Positives = 244/678 (35%), Gaps = 56/678 (8%)

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR-ILSLDGIYSELAETTLKCKKLSN 190
           E L   G     +       A+ I          LR I       +E+A    +      
Sbjct: 284 EALFPGGTPLLALIAGIALTAMLI--------VVLRAIRQRGDSLAEVAALREQQINARE 335

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
             +  + + ++    ++  D+  +IL+AN +     E          G     F  E   
Sbjct: 336 EEN--RSIIENSVVGIFILDERREILFANHA---ALEIFDKREDGMGGLPLTKFVTEAG- 389

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
            + + +       +   +  H +    +   +        I  DVS E+    +L    E
Sbjct: 390 WLPAEAGYNATGTKHDGSTLHLDLHYNEWETLNGVKRITAIVRDVSVEVGAVGELAGIKE 449

Query: 311 ILHNLTVA--IAIFDQNRY--LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA---N 363
              +      I +F+ +        + ++ ++ ++      T    +E L  +       
Sbjct: 450 RYDHALAGSEIGVFEIDLMSGTSVVSPTWRKIMDVGPEIEDTQ---EEFLSRIHPDDLPR 506

Query: 364 KLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENL 419
            +    +  T K E   + Y+        W   +     V+V     G     +    ++
Sbjct: 507 LIEADQDCITGKAERSRTEYRMQFGESWRWMRSD----AVVVDRADDGSAIRMVGTQSDI 562

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T             K     ++    G+A    +G+    N A   L    +  ++   +
Sbjct: 563 TALRHARNALEASEKRFRTVLNAAPVGMATLNSNGQFTSVNNAMCELTGYSQKAMTDQFN 622

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  I           +   L   I+T F +      G+ E+      E+ I+     Q  
Sbjct: 623 LAQIIP--------EEDVKLMRDIVTKFTE-----SGSNEVYRG---EHPILHKDGGQRW 666

Query: 540 LTFVNVTDSVRAERALTEKNE-----ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             F       + E A     +       +K DEIKN FV  VS+ELR+PLT+I G   L+
Sbjct: 667 GLFNITWTFDKNEGAYVFIAQVNDITDQKKIDEIKNEFVSTVSHELRTPLTSIKGALGLI 726

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + S   ++ +   + +E    ++  L  +VNDILDL  + +G +  + S + LN++++  
Sbjct: 727 EMSARDTMPASALRLIEIARNNADRLTTIVNDILDLEKISSGKIDFDLSPMSLNEVISSA 786

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q +      +N ++ +       +  AD  R++Q+ + ++SNA  +S++G+ V +KA  
Sbjct: 787 VQEMMPFAVTHNTKLVMDLPDTDINVTADWSRMMQVLANLMSNACKYSTEGTDVTIKAET 846

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                I  V+N G  +PE+    +F  F        R   G GLGL+I    +   GG++
Sbjct: 847 IGDMAIVYVQNFGPGVPENFKNRIFQAFSQADGSDTRAKGGTGLGLNITRQIVWRQGGNI 906

Query: 773 SISSSDEGVTTINCRIPS 790
              S   G T      P 
Sbjct: 907 GFESKPSGTTIFWFTCPL 924



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 132/449 (29%), Gaps = 65/449 (14%)

Query: 18  TLFSCKIAVFGTIAGMLLTTIIPIIL-LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLL 76
            LF     +   IAG+ LT ++ ++L  IRQR     +V        +I  +  +  S++
Sbjct: 285 ALFPGGTPLLALIAGIALTAMLIVVLRAIRQRGDSLAEVAALRE--QQINAREEENRSII 342

Query: 77  T--------ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLS 128
                     +    I++           +      +P   T  ++   WL         
Sbjct: 343 ENSVVGIFILDERREILFANHAALEIFDKREDGMGGLP--LTKFVTEAGWLPAEAG---- 396

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD-GIYSELAETTLKCKK 187
                 + +G +  L         +    R++   A +R +S++ G   ELA    +   
Sbjct: 397 YNATGTKHDGSTLHLDLHYNEWETLNGVKRIT---AIVRDVSVEVGAVGELAGIKERYDH 453

Query: 188 LSN-------HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                      I +      S+    W +                 E     F   I   
Sbjct: 454 ALAGSEIGVFEIDLMSGT--SVVSPTWRKIMDVGP---------EIEDTQEEFLSRIHPD 502

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI------- 293
                 E  +  I+  A        +   E    +  +   V+    + G AI       
Sbjct: 503 DLPRLIEADQDCITGKAERSRTEYRMQFGESW--RWMRSDAVVVDRADDGSAIRMVGTQS 560

Query: 294 DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D++      + L         +L+   V +A  + N      N +  EL       +   
Sbjct: 561 DITALRHARNALEASEKRFRTVLNAAPVGMATLNSNGQFTSVNNAMCELTGYSQKAMTDQ 620

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDT---WHLPNGQTLHVIV 404
            +  +++       KL   +  K  +     VY+      HKD    W L N        
Sbjct: 621 FNLAQIIP--EEDVKLMRDIVTKFTESGSNEVYRGEHPILHKDGGQRWGLFNITW----T 674

Query: 405 TSNPRGGTIWMFE--NLTVQVDLETKYNT 431
                G  +++ +  ++T Q  ++   N 
Sbjct: 675 FDKNEGAYVFIAQVNDITDQKKIDEIKNE 703


>gi|328466858|gb|EGF37968.1| putative histidine kinase [Lactobacillus helveticus MTCC 5463]
          Length = 619

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 172/421 (40%), Gaps = 38/421 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKY-NTLVKVQGETID 441
            E  K   H+ NG  +  V + SN   G +   F  L+V+++   +  ++  +     + 
Sbjct: 212 EEMQKQALHIANGDYSSQVKIYSNDELGQLAKAFNTLSVRIEQSQEESDSERRRLDSVLS 271

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    S    +E+ +     I  +         ++   DL +
Sbjct: 272 HMSDGVLATDRHGNVSVVNHMALSYLNADEDEIIN-RPIAEVLG-----LKDTSSQDLIS 325

Query: 502 AIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +        +K +  T++     + +L  S   +      ++          E+      
Sbjct: 326 S--------QKEIVVTVKPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTEQQ----- 372

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K +  +  F+ +VS+ELR+PLT++  + + L             +++E     ++ 
Sbjct: 373 ----KNENSQRQFISNVSHELRTPLTSLQAYIEALNEEAWKD-PEIAPKFLEVAQQETSR 427

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-------KMHENNIRIKVI 672
           ++ ++ND+L L+ +D G+ K++   + LND ++ +             K H+    IK  
Sbjct: 428 MIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRE 487

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D  +++Q+   I++NA+ +S  G  + ++     G  I S+ + G  IP 
Sbjct: 488 LGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPR 547

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P 
Sbjct: 548 KDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLPY 607

Query: 791 K 791
           +
Sbjct: 608 E 608


>gi|298244840|ref|ZP_06968646.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297552321|gb|EFH86186.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1110

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 123/773 (15%), Positives = 258/773 (33%), Gaps = 69/773 (8%)

Query: 55   VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQL--HQRIDIPQTDTDL 112
             ++  +   ++ +       L        +VW      P+   +    +  D      + 
Sbjct: 368  EDQKRAE-QQLKESRENLRVLAETVPQ--LVWA---TRPDGWSEYFNQRFCDYTHATWEQ 421

Query: 113  LSFENW---LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC-------AIKIEG-RVSG 161
            L    W   L    Y +     E   + G  +++    +            +    R   
Sbjct: 422  LYGYGWRQFLHPDDYERTLAVREHAFRTGVPYEVEFRLREGQTGLYHWFLARAMPMRDET 481

Query: 162  SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
                       G  +++ E     ++L       +VL +++   VW     G   + N  
Sbjct: 482  GQIVKWF----GTCTDIDEQKQAEQQLKESRESLRVLAETVPQFVWVTRPDGLHEYVNQR 537

Query: 222  YKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS------SSALEKNFCETVSTLEHGNNK 275
            ++  T       Q       +    E ++R  +       + +     E +   + G  +
Sbjct: 538  WRDYTGLTLEQMQSDRWAYLQFIHPEDRQRHRAHWQHALDTGIMYEHEERIKNGQTGEYR 597

Query: 276  SY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD----QN 325
             +  + + V +  G+     G   D+  +     QL  + E    L   +  F      +
Sbjct: 598  WFLARGMPVRDDAGQIVKWFGTCTDIEDQKRAEQQLKESEENWRVLAEMVPHFMWTALPS 657

Query: 326  RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE-----NIFS 380
               ++ N+ + +   + L  L  +      L+ +   ++   +  W+   +         
Sbjct: 658  GQFEYFNQRWFDYIGLTLKQLQNDRW--AYLQLIHPDDRDGNRAIWQHALDTGDMFEYEE 715

Query: 381  VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
              ++ ++ +  W L   + + V   +           ++  +   E       +     +
Sbjct: 716  RLRNGQSGEYHWFLL--RAMPVRDEAGQIIKWFGTCTDIDDRKRAEEALRQSQERASILM 773

Query: 441  DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            +    G+ V   + +I  +N  F  +       L    H+  +  T   Y   +      
Sbjct: 774  NSNIIGIKVIEGE-QIVDANDTFMHMTGYTREDLRE-RHMNLLHMTAPEYLARTLEAHQE 831

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             A   S        +        S L   +  +         +       A + L     
Sbjct: 832  LAAQQSL----TPYEKEYVCKDGSRLPVLVGGIALEHHPRQAICFVLDNSARKEL----- 882

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                 ++ K+ F+   S+ELR+PLT +   T+LL           Q+  +  +      +
Sbjct: 883  -----EQRKDDFISMASHELRNPLTALALHTNLLHRQLARHGTLDQAPALSGMETQINKI 937

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              LV ++LD++ + AG ++     I L+ LL E+  ++      + I   ++      S 
Sbjct: 938  SRLVEELLDVSKMQAGRLEYREEMIDLDALLREIADTMQQTHPSHRI---LVGGAVRTSL 994

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            +ADR RL Q+F  +LSNA+ +S    TV +  +         V+++G  IP + C  +F 
Sbjct: 995  LADRDRLGQVFINLLSNAIKYSPGAETVEMDLSASREMVTIRVQDHGLGIPREQCDKIFE 1054

Query: 741  RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF       QR   G+G+GL IV   +  HGG +++ S     +T     P K
Sbjct: 1055 RFYRATGSRQRAIPGLGMGLYIVAEIVKHHGGSITVDSEVGKGSTFTVIFPKK 1107



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 68/532 (12%), Positives = 157/532 (29%), Gaps = 62/532 (11%)

Query: 73  HSLLTENNCLTIVWDG-KDETPEIIGQ-LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA 130
           H+++       +VW G  D + +   + L         +     +   L      ++  A
Sbjct: 258 HAVIDAIPQ--LVWTGQPDGSIDYYNRRLCDYSGQSTEEAQGEGWLQCLHPEDRQRVRSA 315

Query: 131 TEKLRKEGQSFDLVAE-----TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
            ++  + G  ++         T       +        A   +    G  +++ +     
Sbjct: 316 WQRAVQTGGVYEAELRLRQSTTGEYRWFLVRAMPVRDEAGQIVRWF-GTCTDIEDQKRAE 374

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           ++L       +VL +++  LVW     G   + N  +   T                   
Sbjct: 375 QQLKESRENLRVLAETVPQLVWATRPDGWSEYFNQRFCDYTHATWEQLYGYGWRQFLHPD 434

Query: 246 EEIKKRMISSSALEKNFC----ETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDV 295
           +  +   +   A            +   + G    +  + + + +  G+     G   D+
Sbjct: 435 DYERTLAVREHAFRTGVPYEVEFRLREGQTGLYHWFLARAMPMRDETGQIVKWFGTCTDI 494

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            ++     QL  + E L  L   +  F      +   ++ N+ + +   + L  + ++  
Sbjct: 495 DEQKQAEQQLKESRESLRVLAETVPQFVWVTRPDGLHEYVNQRWRDYTGLTLEQMQSDRW 554

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENI--------FSVYKSSETHKDTWHLPNGQTLHVI 403
               L+F+   ++   Q +   W+  +            K+ +T +  W L  G  +   
Sbjct: 555 --AYLQFIHPEDR---QRHRAHWQHALDTGIMYEHEERIKNGQTGEYRWFLARGMPVR-- 607

Query: 404 VTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
              +  G  +  F    ++  Q   E +     +      + +   +    P G+ +  N
Sbjct: 608 ---DDAGQIVKWFGTCTDIEDQKRAEQQLKESEENWRVLAEMVPHFMWTALPSGQFEYFN 664

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             +         +L                    D  D   AI     D     +    L
Sbjct: 665 QRWFDYIGLTLKQLQND-------RWAYLQLIHPDDRDGNRAIWQHALDTGDMFEYEERL 717

Query: 521 LSDSVLEY-----SIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
            +    EY       +P+ +      +   T  ++ D  RAE AL +  E  
Sbjct: 718 RNGQSGEYHWFLLRAMPVRDEAGQIIKWFGTCTDIDDRKRAEEALRQSQERA 769



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 106/348 (30%), Gaps = 35/348 (10%)

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA------IDVSKE 298
           + +++  +  +S  E    E V     G +    +        +  IA      ID++  
Sbjct: 191 QAQLRAAIARASRGETVRFEAVVHPREGMDCHLDVAISTRMDADHHIAYLVIAGIDITAR 250

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                ++     ++  +   +     +  + ++NR   +               +  L+ 
Sbjct: 251 KRAEAEIHA---VIDAIPQLVWTGQPDGSIDYYNRRLCDYSGQSTE----EAQGEGWLQC 303

Query: 359 LRSANKLPEQLNWKTWKENIFS--------VYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           L   ++   Q     W+  + +          + S T +  W L   + + V   +    
Sbjct: 304 LHPEDR---QRVRSAWQRAVQTGGVYEAELRLRQSTTGEYRWFLV--RAMPVRDEAGQIV 358

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
                  ++  Q   E +     +      + + + V    PDG  +  N  F       
Sbjct: 359 RWFGTCTDIEDQKRAEQQLKESRENLRVLAETVPQLVWATRPDGWSEYFNQRFCDYTHAT 418

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
             +L  G   R            +     F   +  ++ E +  +G   L          
Sbjct: 419 WEQL-YGYGWRQFLHPDDYERTLAVREHAFRTGV-PYEVEFRLREGQTGLY--HWFLARA 474

Query: 531 IPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +P+ +      +   T  ++ +  +AE+ L E  E+LR   E    FV
Sbjct: 475 MPMRDETGQIVKWFGTCTDIDEQKQAEQQLKESRESLRVLAETVPQFV 522


>gi|325915918|ref|ZP_08178214.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537885|gb|EGD09585.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 673

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/513 (18%), Positives = 190/513 (37%), Gaps = 56/513 (10%)

Query: 308 TYEILHNLTVAIAIFD--------QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +EI HN+     + D         +  ++  N +F     +  A   +           
Sbjct: 28  YHEIFHNIDAGFCVIDMVFEGDQAVDYMIRTTNGAFERYTGLSNALNVSI---------- 77

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWM 415
                LPE    + W +    V ++    H +       +   V    V    +     +
Sbjct: 78  --RGMLPEHE--QEWFDRYGQVARTGNRIHFEMQAKALRRWYSVDAFRVGQPEQARVAVL 133

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F ++T +  +E +            D L   V V    G ++  N A+            
Sbjct: 134 FMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEF--------- 184

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS----DSVLEYSII 531
            G  I +   +        D   +F   +++  +E++ L+  +           +E +  
Sbjct: 185 FGLDISSGTVSAWSELLHPDDRSIFQFELSAALEEQRGLRALVRARRHDGQWRWIEMTAT 244

Query: 532 PLPNAQTMLT--------FVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVSYE 579
           P  +A                  +   A   L                +K+ F+  +S+E
Sbjct: 245 PRYSADGRFIGLAGSSPDVTEQREIELAREQLLDSERSARNEAESMARLKDEFLATLSHE 304

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT I+G+++LL         +   + +  I++S+     L++D+LDL+++  G ++
Sbjct: 305 LRTPLTTILGWSELLLQRVEEGHPN--YKGLSVIASSARAQKRLISDMLDLSSMLLGKVQ 362

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L   ++ L + + E   +        +  +++         + D  RL Q+   +LSNA+
Sbjct: 363 LEVESLDLAEQVREALSTQELAADGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAI 422

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            F+     + +   RD+G  + SV+++G  I  +    +F RF        R   G+GLG
Sbjct: 423 KFTPAHGRIDVTIERDDGHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLG 482

Query: 758 LSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           L+IV+  + +HGG V  +S       T   R+P
Sbjct: 483 LAIVQQLVEMHGGQVGATSGGRGQGATFTVRLP 515



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +      ++ T  
Sbjct: 136 DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVS 195

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +    + R +F+ E+   +     L             G  +  ++           
Sbjct: 196 AWSELLHPDDRSIFQFELSAALEEQRGLRALVRARRH---DGQWRWIEMTATPRYSADGR 252

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G AG + DV+++  +        +
Sbjct: 253 FIGLAGSSPDVTEQREIELAREQLLD 278



 Score = 54.2 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 27/236 (11%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N ++++ T     +     G   +  +E   +                        + Y 
Sbjct: 60  NGAFERYTGLSNALNVSIRGMLPEHEQEWFDR---YGQVARTGNRIHFEMQAKALRRWYS 116

Query: 279 IVRV----LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
           +             A + +D+++   V  +L  +      L   +     + D    ++F
Sbjct: 117 VDAFRVGQPEQARVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRF 176

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N ++ E + +D+    ++ +     E L   ++   Q       E    +       + 
Sbjct: 177 VNSAYGEFFGLDI----SSGTVSAWSELLHPDDRSIFQFELSAALEEQRGLRALVRARRH 232

Query: 391 TWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                +GQ   + +T+ PR        G      ++T Q ++E     L+  +   
Sbjct: 233 -----DGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLDSERSA 283


>gi|171687465|ref|XP_001908673.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943694|emb|CAP69346.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1417

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/669 (15%), Positives = 236/669 (35%), Gaps = 97/669 (14%)

Query: 197  VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKR 251
             L D++   +    + G +   N + +        + + A  +   L       ++   +
Sbjct: 411  ALLDNIQTPILAMWRDGSVTLPNRAARNLFVRNADLDKSA--DGFDLLPNWMVWDQDFTK 468

Query: 252  MISSSA--------LEKNFCETVSTL--EHGNNKSYKIVRVL-----NSFGEAGI--AID 294
             +  S          EK F      +  EHG +  + +  V           AG+    D
Sbjct: 469  QLDPSEYPIAVLLRTEKPFVGLRIGMRDEHGKSLVFDVEGVAINDENTGEFLAGVVTCRD 528

Query: 295  VSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            V++     +Q+    E     I   +   +     +    F+N  +     +        
Sbjct: 529  VTRLHEELNQIKAADEERFGLICDTMPQLVWTATPDGQHDFYNSRWYHYTGLSEED---- 584

Query: 350  PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSN 407
             S  E        + + E    K WK ++     + E +   +     +G+    +  + 
Sbjct: 585  -SFGEGWSKPFHPDDMVEAA--KRWKHSL----ATGEPYMTEYRCRSKDGEWRWFLGRAL 637

Query: 408  PR------------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            P             G    + E++  +++ +     L+ V    + +++  +     + +
Sbjct: 638  PLRNKQTGKIEKWFGTCTDVHESIETKIEAKRTRQQLLSV--IALSNMT--MFTVDLNRK 693

Query: 456  IKLSNPAFRSLWKTEENRLSP--GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            I +   A    ++ +        G ++ ++    +    E       + + +  D     
Sbjct: 694  ITMIEGALIWDYQCDNTTSRWFIGENVYDVFNRLNSQLPEGQMPAFLSPLESILDGSTTR 753

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTML-----------------------TFVNVTDSVR 550
                   +          P+   +                             ++    +
Sbjct: 754  EDFQEHEMDGRWYRTRFQPILGKRIREKGEANTIIEGVIGLIMDVTELKAREQDIQAQAQ 813

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             +R L     A ++A  +K+ F+ ++S+E+R+P+T +IG ++LL       L  +Q    
Sbjct: 814  EKRQLVANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMSELLLD---VELTEEQRDIT 870

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  S+  LL ++NDILD + V++G + +      L+ ++ +V + ++      ++   
Sbjct: 871  ENIYRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVIVRDVSKMLSFAAERKDLAFH 930

Query: 671  VISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFS 722
                  + +    + D  R+ QI + +++N++ F++ G  V     ++       +  F 
Sbjct: 931  SDISEDIETDMVVMGDPGRVRQIITNLVTNSIKFTNHGH-VKFSVFKEKDTPEITEIKFV 989

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +++ G  I E++ K +F  F        R   G GLGL+I +  ++L  G + + S+   
Sbjct: 990  IEDTGIGIEEEVRKRLFQPFSQGDASTARKFGGTGLGLTICKHLLDLMKGRMVLESTLGT 1049

Query: 781  VTTINCRIP 789
             TT    IP
Sbjct: 1050 GTTATFWIP 1058



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 109/356 (30%), Gaps = 49/356 (13%)

Query: 128 SKATEKLRKEGQSF---DLVAETQNDCAI--KIEGRVSGSCAFLRILSLDGIYSELAETT 182
                 L +  + F    +    ++  ++   +EG           L+      ++    
Sbjct: 474 EYPIAVLLRTEKPFVGLRIGMRDEHGKSLVFDVEGVAINDENTGEFLAGVVTCRDVTRLH 533

Query: 183 LKCKKL-SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES- 240
            +  ++ +     F ++ D++  LVW     G   + N  +   T   G+  + + GE  
Sbjct: 534 EELNQIKAADEERFGLICDTMPQLVWTATPDGQHDFYNSRWYHYT---GLSEEDSFGEGW 590

Query: 241 -----RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-------KIVRVLNSFGE 288
                     E  K+   S +  E    E     + G  + +       +  +       
Sbjct: 591 SKPFHPDDMVEAAKRWKHSLATGEPYMTEYRCRSKDGEWRWFLGRALPLRNKQTGKIEKW 650

Query: 289 AGIAIDVSKEITVNDQLTHTYE------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            G   DV + I    +   T +       L N+T  +   D NR +     +   +W+  
Sbjct: 651 FGTCTDVHESIETKIEAKRTRQQLLSVIALSNMT--MFTVDLNRKITMIEGAL--IWDYQ 706

Query: 343 LAFLATNPSNDE-LLE-FLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQT 399
                +     E + + F R  ++LPE      +   + S+   S T +D   H  +G+ 
Sbjct: 707 CDNTTSRWFIGENVYDVFNRLNSQLPEG-QMPAFLSPLESILDGSTTREDFQEHEMDGRW 765

Query: 400 LHVIVTSNPR-------------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                                   G I +  ++T     E       + + + + +
Sbjct: 766 YRTRFQPILGKRIREKGEANTIIEGVIGLIMDVTELKAREQDIQAQAQEKRQLVAN 821


>gi|328873791|gb|EGG22157.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1072

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/355 (25%), Positives = 162/355 (45%), Gaps = 25/355 (7%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV      G I  +N AF S +    + L  G H+  +  T   YY      ++ A  + 
Sbjct: 579 GVMFSTLKGTIIDANDAFLSTFGYSRSDLENG-HVDWMMMTPPEYY------EISARALQ 631

Query: 506 SFDDER--KSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +R  + ++      S + +   I   + +         V D  R  +A     E+ 
Sbjct: 632 ELKSKRWCQPIEKAYFHRSGAKVPVLISAAMVDGTDEQCITFVFDLSRYRQA----EESA 687

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A+++K+ F+ ++S+ELR+P   I+G T ++  SK   L   Q    E I  S+  L++
Sbjct: 688 IQANKLKSQFIANISHELRTPCHGILGMTQIILDSK--ELTPSQRDNAETIKKSTDNLVS 745

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD---GKLGS 679
           L++DILD + +++G M L++S+  L  ++ +V    +   +   I +  I          
Sbjct: 746 LIDDILDFSKIESGKMTLDFSSFELVSMVEQVLHEHSKLSNAKAIDLVFIMGREYPVPPV 805

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMC 735
              DR+R+ QI S ++SNA+ F+  G   + +    ++GD     FSV++ G  IP +  
Sbjct: 806 LFGDRKRIKQILSNLVSNAVKFTEAGHVLIEISTEYESGDQISLKFSVQDTGIGIPHENA 865

Query: 736 KSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F  F+    +   +  G GLGLSIV+  ++L GG +S  S     +T    +
Sbjct: 866 SQLFVPFIQLDGSSSRKHGGSGLGLSIVKELVDLMGGTLSFESKKGQGSTFWFSL 920


>gi|298489822|ref|YP_003719999.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298231740|gb|ADI62876.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 884

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 110/667 (16%), Positives = 236/667 (35%), Gaps = 72/667 (10%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +   + +E+ E       L +     + L  +    ++  D   ++   N + ++    
Sbjct: 244 RTNTSLRAEIVERQRTEAALRHTNQTLQSLIAASPRAIFTLDLHNNVKMWNPAAERMF-- 301

Query: 229 EGIVFQKAIGESRKLFKEEIKK-RMISSSALEKNFCETVSTLEHGNNKSY-KIVRVLNSF 286
            G    + + +   +   E+++   I  + ++     +V   +   + S   IV      
Sbjct: 302 -GWSETEVLDQPNPIMSAELEEYEKIKETVIQGITPPSVEVRQRKKDNSLIDIVFSAAPL 360

Query: 287 --------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR------YLQFHN 332
                   G   +  D++++    +Q+     ++ N   A+ I +          + + N
Sbjct: 361 HNSEGVISGMVAVVADITEQKRQAEQVRFLESVVVNTNDAVLITEAEPIDEPVPRILYIN 420

Query: 333 RSFVELWEIDLA--------FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
            +F  +               L    +   +L+ +R+A                    + 
Sbjct: 421 EAFTRMTGYSPEEVLGKTPGILQGPKTTGAVLDQVRTAL-----------------FSRE 463

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQG 437
           S T +   +  +G    V  +  P           I +  +++ +  +E       +   
Sbjct: 464 SVTVEAINYRKDGSEFWVESSIVPVADKTGYYTHWISIQRDVSERKRIEQALRCSEERFR 523

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-----GTHIRNIAATCSRYYN 492
             I++  + + +   DG I   +P+   +       L         H  +  ATC    N
Sbjct: 524 SLIENALDVITILDTDGTIHYMSPSVEKVLGYRSVELINQNFFAWIHPDDFVATCYNITN 583

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                D+   +   +  +  S + TLE +S   ++ S +       ++   ++T+  R E
Sbjct: 584 AIKNPDVPLPVEFRYRHQDDSWR-TLEAISQKFVDNSEL----TSIVVNSRDITERKRLE 638

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVE 611
             +    E  ++   +K  F    S+E R+PL+  +    LL+ S     N  K+S+ + 
Sbjct: 639 -EVRLALEREKELSAMKIRFFSMASHEFRTPLSTALAAAQLLENSPHAWENGGKRSRNLR 697

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   ++ L++DIL +   + G ++ N   + L     +  + I        I +  
Sbjct: 698 RIQDSVKNMVQLLDDILTINRAETGNLEFNPQWLDLERFCRQFVEEIRLSNTSEYI-LTF 756

Query: 672 ISDGKLG--------SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             D                D + L  I   +LSNA+ +S + + V      D+   I  +
Sbjct: 757 TCDSVPWRNTVEQWQQAYLDEKLLRSILGNLLSNAIKYSPEKTQVDFCLNFDHNQVIIQI 816

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            ++G  I       +F  F    +     G GLGL +V+  ++LHGGH++I S     TT
Sbjct: 817 SDHGIGISTTDQDQLFEPFHRGHNVRNIAGTGLGLVVVKKCVDLHGGHLNIVSELGHGTT 876

Query: 784 INCRIPS 790
           +   +P 
Sbjct: 877 VTVTLPL 883


>gi|145613814|ref|XP_363416.2| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15]
 gi|145020837|gb|EDK04966.1| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15]
          Length = 1341

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/669 (15%), Positives = 222/669 (33%), Gaps = 93/669 (13%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQKAIGESRKLFKEEIKKRMIS 254
              D+    +    + G   + N + +    T+        A+     ++ E+  + +  
Sbjct: 292 ATLDNSQMPILAMWKDGSASFPNKAARAMFRTDQSDASEGDALLRRWDVYDEDFTQALEP 351

Query: 255 SS-------ALEKNFCETVSTL--EHGNNKSYKIV-----RVLNSFGEAG--IAIDVSKE 298
                      E  F      +    G    + ++             AG     DVS  
Sbjct: 352 QDYPISILLRTETPFTGIRIGMYNPDGQKVVFDVLGEAIKDEQTGEFLAGVIYCRDVSPM 411

Query: 299 ITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRS---FVELWEIDLAFLATNP 350
             + + +    +     I   +   +     +    F+N     +  L + D   L    
Sbjct: 412 KQIINNMKELEDEKFRLICDTMPQLVWTTTPDGRHDFYNDRWYRYTGLTKGDSLGLGWKH 471

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNP 408
                       + +PE    + W  ++     + + +   +     +G+   ++  + P
Sbjct: 472 PFHP--------DDMPEAE--RRWARSL----ATGQPYDVEYRCRNKDGEWRWMLGRALP 517

Query: 409 RGG--------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                            ++   +  +     L +     I H    +     D  + +  
Sbjct: 518 LRDPETKEIKKWFGTCTDVHESIQAKVTAERLREQLLTVITHAHVTIFTVDNDRNVTMLE 577

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYN------ESDGWDLFAAIITSFDDERKSL 514
            A R     E  R   G     +       +N      E      F   I +    + + 
Sbjct: 578 GALRWDATGENYRDLEGDSKWYVGRNMYEVFNTLNSHLEDGERPRFLEPIEAILAGKSTE 637

Query: 515 QGTLELLSDSVLEYSIIPLPN-------------------------AQTMLTFVNVTDSV 549
                           IP+                            +     +++ +  
Sbjct: 638 DIQEHGFDGRWYRTRFIPVSAKLKTAEGFSNNAGSIEGVIGVIFDVTELRAREMDLVEQA 697

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  R L     A ++A  +K+ F+ ++S+E+R+P+T +IG +   +      L  ++ +Y
Sbjct: 698 KERRQLVANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMS---ELLLDLELGDEEREY 754

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  S+  LL ++NDILD + V++G + +      L+ ++ +V + ++      N+  
Sbjct: 755 GENIYRSANALLAVINDILDFSKVESGHLDIEEVQFSLSVIVGDVNKMLSFAAERKNLDF 814

Query: 670 KVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFS 722
           +      +      + D  R+ QI + +L+N++ F+ +G    S V  +   D  +  F 
Sbjct: 815 QSEIASDIEEDLVVLGDPGRVRQIITNLLTNSIKFTKQGYVRFSVVKERETPDIIEIKFV 874

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I   +   +F  F        RR  G GLGL+I ++ + L  G +++ S++  
Sbjct: 875 VEDTGIGIDAQVRSRLFQPFSQGDASTARRFGGTGLGLTISKNLLELMKGRMTLESAEGK 934

Query: 781 VTTINCRIP 789
            TT    IP
Sbjct: 935 GTTATFWIP 943



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 85/293 (29%), Gaps = 49/293 (16%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES------RKLF 244
               F+++ D++  LVW     G   + N  + + T   G+    ++G            
Sbjct: 422 EDEKFRLICDTMPQLVWTTTPDGRHDFYNDRWYRYT---GLTKGDSLGLGWKHPFHPDDM 478

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-------KIVRVLNSFGEAGIAIDVSK 297
            E  ++   S +  +    E     + G  +         +           G   DV +
Sbjct: 479 PEAERRWARSLATGQPYDVEYRCRNKDGEWRWMLGRALPLRDPETKEIKKWFGTCTDVHE 538

Query: 298 EITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRS---------FVELWEIDLA 344
            I          E    ++ +  V I   D +R +     +         + +L E D  
Sbjct: 539 SIQAKVTAERLREQLLTVITHAHVTIFTVDNDRNVTMLEGALRWDATGENYRDL-EGDSK 597

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           +     +  E+   L S  +  E+  +    E I ++     T     H  +G+      
Sbjct: 598 WYVGR-NMYEVFNTLNSHLEDGERPRFL---EPIEAILAGKSTEDIQEHGFDGRWYRTRF 653

Query: 405 TS------NPRG---------GTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                      G         G I +  ++T     E       K + + + +
Sbjct: 654 IPVSAKLKTAEGFSNNAGSIEGVIGVIFDVTELRAREMDLVEQAKERRQLVAN 706


>gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS]
 gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS]
          Length = 1262

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 160/359 (44%), Gaps = 16/359 (4%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
             E    ++ G+A+    G  + +N     +  T  + +     +         ++ +  
Sbjct: 426 FEEATKAINTGLAISNVAG--EQANTIMLEIKSTANSNMIISLFLLFFVLLICYFFLQWS 483

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              +   I    D  RK   G     S  +++ +   +    T    +   D  R+ R L
Sbjct: 484 KNRILTPIQELIDITRKMASGN---FSQRIVKKAEDEIGQLGTSFNTM-ADDLQRSTRKL 539

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E    A++ K+ F+ ++S+E+R+P+  IIG T L   +    L ++Q  Y+ ++ +
Sbjct: 540 LTAKEQAELANKAKSDFLANMSHEIRTPMNGIIGLTQLALKT---DLTAEQQDYLTHLES 596

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL +++DILD + ++AG++++      L+ +L+ +   +  ++ E  + + +  D 
Sbjct: 597 SSQALLVIIDDILDFSKIEAGMLQMELVDFSLDKVLHHLFSVLGMRIEEKGLELLLDIDK 656

Query: 676 KLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI 730
            +  + + D  RL Q+   +++NA+ F+ +G  +I    L          FS+K++G  I
Sbjct: 657 SVPHYLIGDPLRLGQVLINLVTNAIKFTDQGEILIKIEMLNLTAKQITLCFSIKDSGIGI 716

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +    +F+ F        R   G GLGL+I +  + + GG++ + S  E  ++ +  
Sbjct: 717 SPEAIAQLFDAFTQADTSTTRKFGGTGLGLAICKRLVEMMGGNIWVESQLEQGSSFSFT 775


>gi|91772833|ref|YP_565525.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711848|gb|ABE51775.1| pleC (Non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 519

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/518 (18%), Positives = 207/518 (39%), Gaps = 81/518 (15%)

Query: 350 PSNDELLEFLRSANK------LPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLH 401
             ND+ LE + ++ K      +   +  +  ++ + +V      H +  +    +G+ + 
Sbjct: 4   HCNDKFLEIISASRKDVIGFNMATSIRDEKMRDAVKAVLSRKPGHYEGKYCTVISGKVIF 63

Query: 402 VIVTSNPRG-------GTIWMFENLTVQVDLET-------KYNTLVKVQGETIDHLSEGV 447
           +    NP         G I +FE++T + + E        +  TL+++   T D   + +
Sbjct: 64  IKADYNPNISEEGTLLGGIGIFEDITRRKEAEDAWKLDEYRLETLLQLNQMT-DRSMQKI 122

Query: 448 AVFGPD----------GRIKLSNP------------AFRSLWKTEENRLS--------PG 477
             F  +          G I   N             A     K  +  +          G
Sbjct: 123 VDFAREEAVRLTQSQVGYIAFVNEDESVLTMHSWSQAAMLECKIRDKPIVYTLKTTGLWG 182

Query: 478 THIR----------NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +R          N+     + Y +          I  FD ER      +    +   E
Sbjct: 183 EALRQRKPIITNDYNVPNPLKKGYPKDHMKLTRHMNIPVFDGERVVAVAGVGNKDEEYDE 242

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE--------------IKNSFV 573
             +  L     M     +    ++E AL +    L + ++              +KN F+
Sbjct: 243 SDVRQL--TLLMEGMWRIIQRKQSEEALQKYANELSEVNKELEKVNDDLKSLDVMKNEFL 300

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+EL++PL +I G+ +L+    LG+LN +Q + V  +  +S  L  L+  +L ++ +
Sbjct: 301 SNISHELKTPLVSIKGYVELVFDGSLGTLNEQQKKAVNIVLRNSERLRRLIESLLFISGL 360

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++  ++ +   + + ++++ V   +  ++ +  + I+      L     D+ RL  + + 
Sbjct: 361 ESRAIQYHIEKVRIAEIIDNVVNDVNLQIEDKGLLIENNVPENLPLINGDKARLSDMLTN 420

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR 751
           ++ NA+ F+     +IL A  +  D    VK+ G  IP+++  ++F RF         + 
Sbjct: 421 LVDNAIKFTPSEGRIILNAYEEEDDLHIEVKDTGIGIPKELIPNLFQRFYQVDASIKRRY 480

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G G+GL I ++ +  H G++ I S +E  TT++ R+P
Sbjct: 481 GGTGVGLYICKNIVEAHKGNIWIESEEEKGTTVHIRLP 518


>gi|94501557|ref|ZP_01308075.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94426375|gb|EAT11365.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 737

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 155/378 (41%), Gaps = 19/378 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L T+ N    ++    +    G      D      N   R +   +EN           
Sbjct: 222 RLTTQLNRERTLRARAGEIADIGFWEVNLDTGYIYWNKKTRLIHGVDENYKPD------- 274

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNA----- 536
             T   +Y      D     + +  +        LE++    +      I + +      
Sbjct: 275 LETAIEFYKAGYSRDTITQAVQTCLEHGTPYDVELEIVDIHGNEKWVRAIGIKDDSSDEL 334

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +    F +V    RA   L +   A  +A+  K+ F+  +S+ELR+P+  ++G   L++ 
Sbjct: 335 RMFGLFQDVDQRKRAISELEQARHAAEEANRAKSVFLASMSHELRTPMNGVLGMLQLMEG 394

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S    +N ++   ++  S S+  LL +++DILD + ++AG + L+ +   +++LL+ +++
Sbjct: 395 SVKQEVNKRR---LQIASNSAKNLLTILDDILDFSRIEAGKLVLDSTEFSMSELLSSLQE 451

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               ++ +    I + +  +   +  D  R+ Q+   ++ NA  F+  G  ++   + +N
Sbjct: 452 LFNIEVEKKRSTIHIENLLQHDMYWGDEGRIRQMLINLIGNANKFTQNGQIIVRAQSGEN 511

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
            D   SV++ G  IP D    +F  F        R   G GLGL+I +    L  G +S+
Sbjct: 512 RDLKLSVQDTGIGIPSDRLGQIFESFTQADSSTTRQYGGSGLGLTICKRLSELMNGTISV 571

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     +     +P +E
Sbjct: 572 ISEQGKGSEFTLHLPLRE 589


>gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri]
          Length = 744

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/397 (23%), Positives = 165/397 (41%), Gaps = 25/397 (6%)

Query: 414 WMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +  E L  Q   E +K N L+KV    +D++  G+     +G + L N A R      E 
Sbjct: 346 YELERLVEQRTTELSKANELLKVL---LDNVQAGIVACDAEGILTLFNQAARQFHGLPEQ 402

Query: 473 RL---SPGTHIRNIAATCSRYYNESD---GWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            L       H            ++++      L    + + +       G ++ L  S  
Sbjct: 403 ALPPEEWAKHYDLYLPDGKTRMSKNEIPLFRALQEQTVKNVEMVIAPKHGKVKTLLASGQ 462

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA----------LRKADEIKNSFVQHV 576
                       ++   ++T+   AE    +                +A+ +K+ F+  +
Sbjct: 463 AIVDNEGKKQGAVVVMHDITERKIAEAERIQLIRQQVQEQSARLKAEEANRLKDEFLAVL 522

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL  I+G+T LL+  KL S  +K    +E I  ++ +   L+ D+LD++ +  G
Sbjct: 523 SHELRTPLNPILGWTKLLRAGKLDS--AKTDYALETIERNAKLQTQLIGDLLDVSRILQG 580

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            + LN + + L   ++   +++       +I+I+ + D  +G  + D  RL Q+   +LS
Sbjct: 581 KLSLNMAAVNLAPTISAAIETVQLAAQAKSIQIETVFDPNVGQVLGDSTRLQQVVWNLLS 640

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ F+  G  V ++    +      V + G  I  D    VF  F        R   G+
Sbjct: 641 NAVKFTKNGGRVEIRLECVDSQAEIKVSDTGKGISPDFLPHVFESFRQADATITRKFGGL 700

Query: 755 GLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
           GLGL+IV   + LHGG +   S  E    T   R+P 
Sbjct: 701 GLGLAIVRHLVELHGGTIYAESPGEDLGATFTVRLPL 737



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 8/132 (6%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN---PSNDELLEFLRSANKLPE 367
           +L N+   I   D    L   N++  +   +    L         D  L   ++     E
Sbjct: 369 LLDNVQAGIVACDAEGILTLFNQAARQFHGLPEQALPPEEWAKHYDLYLPDGKTRMSKNE 428

Query: 368 QLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
              ++  +E      +     K       L +GQ   ++     + G + +  ++T +  
Sbjct: 429 IPLFRALQEQTVKNVEMVIAPKHGKVKTLLASGQA--IVDNEGKKQGAVVVMHDITERKI 486

Query: 425 LETKYNTLVKVQ 436
            E +   L++ Q
Sbjct: 487 AEAERIQLIRQQ 498


>gi|163744983|ref|ZP_02152343.1| Multi-sensor Signal Transduction Histidine Kinase [Oceanibulbus
           indolifex HEL-45]
 gi|161381801|gb|EDQ06210.1| Multi-sensor Signal Transduction Histidine Kinase [Oceanibulbus
           indolifex HEL-45]
          Length = 1048

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 128/655 (19%), Positives = 230/655 (35%), Gaps = 60/655 (9%)

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
           AF  +       SELA    +        +  + L ++    V+  D    +L+AN +  
Sbjct: 293 AFRSMRQRSAALSELAALRERQIDAHEEEN--RSLIENAVTPVFLLDSNDRVLFANQAAL 350

Query: 224 -----KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK---NFCETVSTLEHGNNK 275
                     + + F   + +  +    E       +   ++   +      T   G  +
Sbjct: 351 VCFGYGREALKDMGFADLVTDVVEDHDHEQVNATGKTCFGQELKLDLQRNDWTTYTGERR 410

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA--IAIFDQNRYLQFHNR 333
              IVR            D++ E+ V D+L     +         I +FD +  L+    
Sbjct: 411 VTAIVR------------DLTSELAVQDELARNKALYDLALEGAQIGVFDID--LRSGKS 456

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
                W   L        +D   EFL      P+ L+     +      +   +  +   
Sbjct: 457 EVSSTWRRILGMADYERLSDPQGEFL--KRVHPDDLSLLIQTDQACISGQQERSVTEYRM 514

Query: 394 -LPNGQTLHV----IVTSNPRGGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            +  G+   +    +VT     G     +    ++T  V       T  +   + +    
Sbjct: 515 KIGTGEWRWMRSDAVVTERDEDGIALRMVGTQTDVTDIVHARNALETSERRFRQVLAAAP 574

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            G+A+ G  G     N A  SL    E+ L   T + ++         E D   L+A  +
Sbjct: 575 VGMAILGDGGVFNSVNSALCSLCGYSEDELLSNTKLDDM-------MPEDDLNKLYAE-V 626

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE---- 560
                 R S         +   EY I      +    F       +  R      +    
Sbjct: 627 RGLVKSRSS--------QNYQAEYRITHKQGFERWGLFNVSWTFDKNTRGYVFIVQINDI 678

Query: 561 -ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              +K ++IK+ FV  VS+ELR+PLT+I G   L+ T+    L     + ++   +++  
Sbjct: 679 TDQKKLEQIKSEFVSTVSHELRTPLTSIKGALGLIDTTDNTRLLPAHIRLIDIARSNADR 738

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L ++VNDILDL  + +G +  ++    L+ ++ +    ++     +N  + V        
Sbjct: 739 LSHIVNDILDLEKISSGEVMFDFHDADLSSVIRDSVNEMSPFATTHNNTLGVQLPDAPLM 798

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R  Q+ + ++SNA  +S   S V ++A +     I  ++N G  +PE+    +F
Sbjct: 799 VRVDESRTRQVLANLISNACKYSDAKSEVQIRAEQLGDRAIVFIQNTGPGVPENFRPRIF 858

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             F        R   G GLGL+I    I   GG +   S   GVT      P  E
Sbjct: 859 QAFSQADGSDTRAKGGTGLGLNITRQIIKRQGGTIGFESIPNGVTVFWFTCPIAE 913


>gi|226315497|ref|YP_002775393.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226098447|dbj|BAH46889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 607

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 172/403 (42%), Gaps = 38/403 (9%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V + S+   G + M F ++T+++ +   +     +     + ++++GV     +G+I L 
Sbjct: 226 VRIYSDDEIGQLGMAFNHMTLRLQEAILQQEEEREKLAGILSNMTDGVIAANRNGQIILF 285

Query: 460 NPAFRSLWK-TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           N A   + + T  + L     + ++           D   L+A       +E   ++ TL
Sbjct: 286 NRAAEDMLQVTMADVLLKRRTLYDLLG-----LPPEDEMSLYAQ------EEPLIIEMTL 334

Query: 519 ELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
               + +L  +  PL +        +    +VTD  R E              + +  FV
Sbjct: 335 PNKEEVILRVTFTPLQHDSKKMGGIIAVVADVTDQQRLE--------------QQRREFV 380

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+PLT I  + + L    +      Q  +++  S+ +  ++ LVND+L L+  
Sbjct: 381 ANVSHELRTPLTTIKSYVEALLDGAVEEPELSQR-FLKVTSSETERMIRLVNDLLQLSRF 439

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D+  ++L+     LN LL+      +    +  +++ +    KL     D   + Q+   
Sbjct: 440 DSQGVRLHCKEADLNRLLHYAADRFSMFSEQQEVQLSLDMPSKLPLVYIDLDAINQVLDN 499

Query: 694 ILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           +LSNA+ ++ +G TV+L A  ++       S+ + G  IP    K +F RF        R
Sbjct: 500 LLSNAIKYTPQGGTVVLMAKENHKQRRVQISITDTGIGIPSRDLKRIFERFYRVDKARSR 559

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              G GLGL+I    +  HG  + I+S     TT+   +P  +
Sbjct: 560 GQGGTGLGLAIARELVQAHGADIEITSEWNVGTTVTFWVPFAQ 602



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 29/162 (17%)

Query: 284 NSFGEAGIAID------VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  G+ G+A +          +   ++      IL N+T  +   ++N  +   NR+  +
Sbjct: 232 DEIGQLGMAFNHMTLRLQEAILQQEEEREKLAGILSNMTDGVIAANRNGQIILFNRAAED 291

Query: 338 LWEIDLAF-LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           + ++ +A  L    +  +LL        LP         E+  S+Y   E       LPN
Sbjct: 292 MLQVTMADVLLKRRTLYDLLG-------LP--------PEDEMSLYAQEEPLIIEMTLPN 336

Query: 397 GQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNT 431
            + + + VT  P        GG I +  ++T Q  LE +   
Sbjct: 337 KEEVILRVTFTPLQHDSKKMGGIIAVVADVTDQQRLEQQRRE 378


>gi|300866806|ref|ZP_07111485.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335188|emb|CBN56645.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 740

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 165/403 (40%), Gaps = 46/403 (11%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             E++           ++  S+ + +F     RI  +N AF +L          G  + +
Sbjct: 348 QAESEQIEERARYRAVVEQASDSIFLFDAKTKRILEANTAFINLL---------GYTLND 398

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-----EYSIIPLPNAQ 537
           I           D   +   I      +++ L   +    D  L       ++I     +
Sbjct: 399 ILNLTVYDITVHDKDTVNRNIELLIRRKQRRLGEVIYCRRDGSLVDVEVNANLISYGGRE 458

Query: 538 TMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            + T   ++TD  R    + +  EA   A+  K+ F+ ++S+ELR+PL  IIG++++L+ 
Sbjct: 459 IICTVVRDITDRKRVLEEMYKAKEAAEAANLAKSQFLANMSHELRTPLNAIIGYSEMLQE 518

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                   +    V+ I  +   LL L+++ILDL+ ++AG M++   T  +   + +V  
Sbjct: 519 DAEDLGEEEFVCDVKNIYKAGKHLLGLIDEILDLSKIEAGRMEMELMTFDVRATIRDVVA 578

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++   + +N  R+ V     +G   +D+ ++ QI   +LSNA  F+  G T+ L  +R+ 
Sbjct: 579 TVEPLLIKNANRLNVQYGEDIGFMHSDQTKVRQILFNLLSNAAKFTHDG-TISLTVSRER 637

Query: 717 ---------------------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
                                         IF+  + G  +  +  + +F  F+      
Sbjct: 638 VAIESEKLKDRESDVENDLSKTLIADYDFLIFNCTDTGIGMSSEQLQRLFQPFMQADPST 697

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            R   G GLGL+I + F  + GG +++ S     +T    IP+
Sbjct: 698 TRKYGGTGLGLAIAKKFCEMMGGEITVKSELGKGSTFTVIIPA 740


>gi|239908871|ref|YP_002955613.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798738|dbj|BAH77727.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1069

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 131/778 (16%), Positives = 274/778 (35%), Gaps = 69/778 (8%)

Query: 43  LLIRQRNSLAKKVNETYSFLSEICDQLSKY-------HSLLTENNCLTIVWDGKDETPEI 95
           +L   R      + +T   +S     L +         + L     + +  D     P  
Sbjct: 50  VLAAHRLEALAPLLQTAQAISAAQVILDRMVQVDGVIEASLFSAAGILLA-DAGTGAP-- 106

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
              L  + D    +T + S    +   +   L+   E +  EG+    +A          
Sbjct: 107 -APLASQTDGALPETRIFS----VTAENDHLLATLIEPIHGEGE----IAGFLRLRYALK 157

Query: 156 EGRVSGSCAFLRI-LSLDGIYSELAETTLKCKKL--SNHISVFKVLFDSLDFLVWHRDQA 212
           +  ++G   +    L++ G Y  LA        L     ++  +   +++        +A
Sbjct: 158 DSALTGGRVWTIFGLAVAGAYVFLALVLNAMLHLFVLRPVNTLRQALEAV--------EA 209

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
           GD+        +     G      +G +       +++             E    L   
Sbjct: 210 GDL-------DQTVPVAGGDALGRLGAAFNAMSARLRETSRWLGESRTEVEEHRLLLARR 262

Query: 273 -NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF--DQNRYLQ 329
            + ++ ++ R          A     E +++  L     IL +   A+     + +R + 
Sbjct: 263 VDERTAELARTNARLTTEITAR-TRAEDSLSRHLALYRAILESTAEAVLCVSANSDREVL 321

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             NR F++LW++   + A  P   +  +        P+ +    ++  +      +ET  
Sbjct: 322 VCNRRFLDLWDLPENW-AQRPEPMDRFKPFLEKLADPDAVA-SGFRTLMLDGKSMAETCH 379

Query: 390 DTWHLPNGQTLHVIVTSNPRGGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            T    +G+ +        + G     ++ + ++T +   E +    +  +   + +   
Sbjct: 380 AT---SDGRYIERRSGPILQDGVYIGRVFSYVDVTARRRTEAELRQTLAQRDALLGNTRI 436

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           G+A    +      N    +L     E  L     +    A   +   ES   D      
Sbjct: 437 GLATT-ENAVCTDINAQGAALLGYTREAILGQSIAVLIPDAAVYQSLAESSDHDFVTQGF 495

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T  + + +   G +  L            P    +  F ++T+  R ++ L +  +   +
Sbjct: 496 TRRECQVQRGDGEMIWLRLHGKSVRP-EAPTISVVWAFDDITEEKRRQQHLEQARDQAEE 554

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K +F+  +S+E+R+PL  +IG +D L   +      +Q  ++  I  S+  LL +V
Sbjct: 555 ASRAKGAFLAVMSHEIRTPLNAVIGLSDALLEGQAA---PEQIDHLRAIRESAGHLLGVV 611

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVAD 683
           NDILD + ++AG + L         L+ E  +++     +  + +   I+     +   D
Sbjct: 612 NDILDFSKIEAGKLVLERRHFDPRALVAEALRAVELVASQKRLALSATIAPNVPAALRGD 671

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCK 736
             RL QI   +L NA+ F++ GS  V ++    +           +V + G  +      
Sbjct: 672 PGRLRQILLNLLGNAVKFTAAGSVAVTVETVPADQTPAGRIGLAVAVTDTGIGLDPTRAS 731

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR---IP 789
            +F RF     +  RR  G GLGL+I +  +   GGH+ ++S     +        +P
Sbjct: 732 ELFERFNQGPGKAARRFGGTGLGLAISKELVERMGGHIGVTSRQGAGSRFAFTVFLLP 789


>gi|325104431|ref|YP_004274085.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324973279|gb|ADY52263.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1146

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 145/281 (51%), Gaps = 5/281 (1%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           +  L +  + + + +I     A+ +       +S  A+  L+ K + L +A + K+ F+ 
Sbjct: 438 EEELRVQQEELRQINIELEEKAKVLENSNMQIES--AKNTLSIKMQELEQASKYKSEFLA 495

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+ELR+PL +I+    +LK +K G L+  +++Y   I  +   LL+L+NDILDL+ ++
Sbjct: 496 NMSHELRTPLNSILILAKILKENKKGHLSEDETKYASVIHRAGGDLLSLINDILDLSKIE 555

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           +G ++LN   + + DL +++KQ      +   +   +  D KL  +   DR R+ QI   
Sbjct: 556 SGFIELNPENLSVADLEDDLKQLFDEVANTKGVNFVIERDPKLPETIYVDRLRIEQILKN 615

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           +LSNA  F+SK  TV +  +  +    FSVK+ G  IPED  K +F  F        R  
Sbjct: 616 LLSNAFKFTSKEGTVSVHMSEKDDFLRFSVKDTGIGIPEDKQKIIFEAFQQADGSTNREY 675

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            G GLGLSI      L  GH+S+ S     +     IP+KE
Sbjct: 676 GGTGLGLSISRELSKLMDGHISLKSEVGKGSEFTLNIPTKE 716


>gi|238026807|ref|YP_002911038.1| hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1]
 gi|237876001|gb|ACR28334.1| Hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1]
          Length = 773

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/507 (20%), Positives = 198/507 (39%), Gaps = 38/507 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +L +LT  + + D    + + N +   L ++D            L + L   +  
Sbjct: 115 QQYESVLASLTQGVIVTDSAGRITYLNPAAAALADLDARVAHGR----ALTDALHGNDGH 170

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS------NPRG---GTIWMF 416
                  T  E +             W  P GQ   + V +      +P G   G + + 
Sbjct: 171 GAGTRSTTVLERVLRG--EPGASDLLWLRPAGQGARIPVAAVASPLCDPDGVRSGAVLVL 228

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL-- 474
            +++   +      T  ++    +D   + +   G D  I   NPA + ++   E +   
Sbjct: 229 RDVSADHE----RATANQMLRRLVDASPDAIIGVGADRLITSWNPAAQRMFGYAEAQALG 284

Query: 475 --------SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                           +AA     ++   G DL   +  + +  R +L  +     + V 
Sbjct: 285 RDAGMLVAPRWQRRHPLAAAVRDVHDAVSGVDLLC-VRENGERFRATLAASPVFDDEQVC 343

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
               + L +A+         D+    R   +       ++ +K+  +  VS+ELR+PL  
Sbjct: 344 VALSLTLRDARL--QRRRERDNHHRLRGARDARRQADTSNRLKDELLAIVSHELRTPLNV 401

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G+ ++++     +L   Q Q ++ I  S+  L  +V D+LD +++  G ++L+   + 
Sbjct: 402 IYGWVEVMRNPVAEAL---QRQAIDAIDRSARSLSRMVADLLDASSLATGKLRLDPMPVD 458

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  ++ +V  ++ T      I ++   +        D +RL Q+ S +LSNA  F+ +G 
Sbjct: 459 LVRVVADVTGALGTTAANEGITLETHCELDTCIVSGDAERLRQMLSNLLSNAFKFTPRGG 518

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
            V +  +R+N   + SV + G  +  +    VF  F          RRG+GLGLSIV   
Sbjct: 519 RVTVALSRENARALLSVTDTGQGVAPEFLPHVFEAFRRAEGSPASPRRGLGLGLSIVRHI 578

Query: 765 INLHGGHVSISSSD-EGVTTINCRIPS 790
             LHGG   ++S      TT    +P+
Sbjct: 579 AELHGGSARVTSDGTGHGTTFEVALPA 605



 Score = 40.7 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 61/206 (29%), Gaps = 29/206 (14%)

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
           LR  GQ   +            +G  SG+   LR +S D   +                 
Sbjct: 196 LRPAGQGARIPVAAVASPLCDPDGVRSGAVLVLRDVSADHERA-------------TANQ 242

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
           + + L D+    +        I   N + ++     G    +A+G    +      +R  
Sbjct: 243 MLRRLVDASPDAIIGVGADRLITSWNPAAQRMF---GYAEAQALGRDAGMLVAPRWQRRH 299

Query: 254 SSSALEKNFCETVSTL------EHGNNKSYKIVRVLNSFGE-----AGIAIDVSKEITVN 302
             +A  ++  + VS +      E+G    ++     +   +       +++ +       
Sbjct: 300 PLAAAVRDVHDAVSGVDLLCVRENGER--FRATLAASPVFDDEQVCVALSLTLRDARLQR 357

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYL 328
            +    +  L     A    D +  L
Sbjct: 358 RRERDNHHRLRGARDARRQADTSNRL 383


>gi|134045335|ref|YP_001096821.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132662960|gb|ABO34606.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 639

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 125/242 (51%), Gaps = 4/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L      L++ D +K+  +  VS+ELR+PLT+I G+ +L+    +G++N  Q + 
Sbjct: 394 KHAEELKASYNELKELDNLKSELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQRKC 453

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++    +   L  L+  +LDL+ ++ G +++    + + +++ +V Q +     E NI++
Sbjct: 454 LQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNICEIVGDVIQYLKPLATEKNIKL 513

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +    +  AD+ R+ Q+ + ++ NA+ FS    ++++    ++      V ++G+ 
Sbjct: 514 NKNVEK--ITLEADKDRITQVLTNLIENAIKFSPANESILVNGTLEDEGLHLKVTDHGAG 571

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP+   + VF+RF       +R   G GLGL++ +S +  HGG + + S     +T +  
Sbjct: 572 IPKKDMEKVFDRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHGGSIWVESELGKGSTFHII 631

Query: 788 IP 789
           +P
Sbjct: 632 LP 633


>gi|254457763|ref|ZP_05071191.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
 gi|207086555|gb|EDZ63839.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
          Length = 766

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/392 (25%), Positives = 172/392 (43%), Gaps = 28/392 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF--GPDGRIKLSNPAFRSLW 467
           G  +++ E LT Q     + + L K   + +D L+E   V      G I   N  F  + 
Sbjct: 250 GLIVYVKEVLTRQ-----EADNLKKELQQFVDALNESAVVSKSDTQGLITFVNDKFCEIS 304

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--- 524
                 L    H  NI        +     +LF  +  +  + +K  + T++    S   
Sbjct: 305 GYSREELIGQGH--NIIR------HPDMPAELFKELWKTIRN-KKIFKATIKNCKKSGEA 355

Query: 525 -VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             ++  I+P+ +    +           E  L    +    A++ K+ F+ ++S+ELR+P
Sbjct: 356 YYVDSVIVPMLDVNNEIVEYLAVRYEVTE--LINSRDEALMAEKAKDEFLSNMSHELRTP 413

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I GF+ LLK       + KQS+Y+E+I  SS+ L+ L+NDILDL+ + +G   L+Y 
Sbjct: 414 LNAINGFSSLLKRQIK---DEKQSKYIEHILESSSQLIGLINDILDLSKLQSGKFILDYH 470

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFS 702
                  +  + +  +  +   ++ + +  D  L      D  R+ QI + +LSNA+ F+
Sbjct: 471 RFEPYSNIYSLVERFSPNIETASLNLVLDLDDSLKIVANGDWLRISQIITNLLSNAIKFT 530

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             G  V L A  ++ +    V +NG  I +++ + +F  F        R   G GLGLSI
Sbjct: 531 PAGGEVRLSANHNDDNLRIIVSDNGLGISKEVQEKIFMPFEQADSSTTRKFGGTGLGLSI 590

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V + +      + + S D   +T    IP KE
Sbjct: 591 VSNLLKQMDAQIKLESEDGNGSTFELNIPIKE 622


>gi|86361054|ref|YP_472941.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86285156|gb|ABC94214.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 797

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/754 (15%), Positives = 249/754 (33%), Gaps = 73/754 (9%)

Query: 86  WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVA 145
           W  K   PE+I      +D    +   L     LK +   +       +  EG+  +   
Sbjct: 52  WAAKRPQPELI-----LLDAQSREGGGLEDCRRLKANPLTRDIPIIIMVSPEGE--ESRI 104

Query: 146 ETQNDCAIK-IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
           E     A+  +   VS +    RI     + +  A    + ++L   ++           
Sbjct: 105 EGLAGGAVDCVSNLVSAAELVARIKRHIELGAVHARLQRRNEQLDTALASMG-------Q 157

Query: 205 LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE 264
            V   D+AG +L +N  Y +    +  V          L   +    + ++S  E     
Sbjct: 158 GVCLFDEAGRLLLSNDRYAEVYGLDPSVIHPGQSLEDILNLRQRVGAVPATSTSEYLAWA 217

Query: 265 TVSTLEHGNNKSYK----------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----- 309
             +          K            +  +  G      D+++       L   +     
Sbjct: 218 EATNKGDTPRDWIKELKSGQIIRGYHQRTSDGGWVSTHEDITQAWQAEKALAKAHVQAER 277

Query: 310 -------------EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                             +   + +FD+       N+ + +L+      L      ++ L
Sbjct: 278 AEQEARAAHARLLAAFEVVPEGLVLFDEEDRFVLWNQRYEQLYAESGDMLVKGMRFEDRL 337

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
                  + PE +  +         + +  T K    LP    + +       GG++ + 
Sbjct: 338 RAGLERGQYPEAVGREEEWLAERLAHHAKPTSKHEQRLPGNHWIRIEERQISEGGSVGIR 397

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLS 475
            ++T     E  +  L        +     + V+  +  R    N A    +     +  
Sbjct: 398 VDITDLKMQEASFRLL-------FEGNPMPMWVYDHETLRFLHVNQAAIDHYGYRLEQFL 450

Query: 476 PG-----------------THIRNIAATCSRYYNESDGWDLFAAIITS---FDDERKSLQ 515
                                + + A++ S  + + DG  +   + ++   +  +  SL 
Sbjct: 451 TMRLSDIEAQETNPPEAVVFDLEDTASSRSSRHLKGDGTAIEVTVYSTCLNYKGKAASLM 510

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             +++      E +++   +    +      +  R    L    E  ++ +E++  FV  
Sbjct: 511 AVVDVTEAKRAEKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSM 570

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            S+E R+PL  I G    L   K  +      +  + I +S + +L L+  IL    +D 
Sbjct: 571 ASHEFRTPLAVIDGAAQRLIRRKEAATPEFLCEKADQIRSSVSRMLELMESILAAGRLDH 630

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G + + +    + +++        +    +  R  +  D    +   D   L Q+FS + 
Sbjct: 631 GRITIVHKPCSIAEIIGICSARQESIRRSH--RFLLDLDRLPPTIFGDHPALDQVFSNLF 688

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           SNA+ ++     V +   +D      +V++ G  I  D    +F R+          G G
Sbjct: 689 SNAVKYAPDAPNVHVTGWQDGTSVCITVRDEGIGIDTDDLPKMFQRYFRARSSTGIAGTG 748

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +GL++V+  I LHGG + ++SS    TT   R+P
Sbjct: 749 IGLNLVKQIIELHGGTIEVASSRGNGTTFTLRLP 782


>gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
           265]
          Length = 869

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 183/454 (40%), Gaps = 44/454 (9%)

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           +L E++ +   +     V +     K T  L  GQ L ++  S          E++    
Sbjct: 10  ELEEKIAFLEHQAIKSRVIEQELLEKQT--LLRGQNLALVRKSIELSDVKLQLEDVLA-- 65

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
                  T        + +  + +     D  I   N   R+L          G+   ++
Sbjct: 66  ----SLRTSENTLATVLANSPDTIVAVDADYSIIYVN---RTLPGCTLPLRVGGSFCEHM 118

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           ++   R Y ++    +FA+   +  + +  + G   +  +S +  S      A  ++   
Sbjct: 119 SSEGQRLYRQAIDT-VFASGQATAIEWKIMVPGGGSIEVESRIGPSFQDGRVASVVILTS 177

Query: 544 NVTDSVRAERALTEKNEALRKADE---------------------IKNSFVQHVSYELRS 582
           +++   + ER L +    L + +                       K+ F+ ++S+E+R+
Sbjct: 178 DISPRKQLERDLQQSFGELEEFNRRLEESVLKTEQMAAEARDANVAKSQFLANMSHEIRT 237

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  +IG  DLL  +   +L+++Q +Y + I  S+  LL ++NDILD + ++A   +L +
Sbjct: 238 PMNGVIGMADLLLET---ALDTEQRKYAQTIIRSARSLLKIINDILDFSKIEANRFELEH 294

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
           S   L DLL E+   +  + HE+ + + V    ++ +  + D  R+ QI   +L NA+ F
Sbjct: 295 SDFELCDLLMEISGILGIEAHESRLELSVHVVPEIPTSLIGDSGRIRQILVNLLGNAVKF 354

Query: 702 SSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGV 754
           +  G  V +K              FSV + G  IP +   S+F  F         +  G 
Sbjct: 355 TPVGGEVGVKLKLQQETDRFVVIQFSVFDTGVGIPPEQVDSIFEPFTQADGSTARKYGGT 414

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGLSI        GG +++ S     +  +  I
Sbjct: 415 GLGLSISNHLATRMGGRINVESHPGEGSVFSFNI 448


>gi|253581814|ref|ZP_04859038.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           varium ATCC 27725]
 gi|251836163|gb|EES64700.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           varium ATCC 27725]
          Length = 617

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/366 (24%), Positives = 170/366 (46%), Gaps = 17/366 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K  T        ++ +++G+ V   + +I L N A   L   +E+ L        I   
Sbjct: 261 KKIMTEKSKAEAIVESINDGIIVTDKENKILLINNAAEKLLNIKESELLDKPFFTAI--- 317

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                      +    +I S   E KS    LEL  +  LE +I        + + +   
Sbjct: 318 -----PNKKIHESINEVINS--REIKSTVKQLELSLNPALEKNI---YCRVFINSIIGKN 367

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L +    L++ D++K+ FV  VS+E R+PLT+I    +LLK   +G++N  Q
Sbjct: 368 KENLGIVTLLQDITKLKEIDQMKSDFVSTVSHEFRTPLTSIGMAVELLKDGSVGTINETQ 427

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I   S  L  L+ D+LDL+ +++G   L +    +  ++     S+       N
Sbjct: 428 QELLKVIKEDSERLNVLIKDLLDLSRLESGKTHLKFEKNNIKKIIETTVNSLKNLSENRN 487

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSK-GSTVILKAARDNGDFIFSVK 724
           ++I++ + G     +AD  +++ + + +++NA+ + S +    +I++A +   + + SV+
Sbjct: 488 VKIEIKNVGSSLFVLADINKIILVLTNLITNAIKYKSEEREGHIIIEAFKKEKNIVVSVE 547

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IPE+  + +FN+F+    ++ G+  G GLGLSI +  I  HGG + + S     +
Sbjct: 548 DNGRGIPEEYIEKIFNKFIQVKVSNEGKIEGTGLGLSICKEIIKNHGGEIWVDSILGKGS 607

Query: 783 TINCRI 788
           T    +
Sbjct: 608 TFYFSL 613


>gi|163789833|ref|ZP_02184269.1| two-component sensor histidine kinase [Carnobacterium sp. AT7]
 gi|159874773|gb|EDP68841.1| two-component sensor histidine kinase [Carnobacterium sp. AT7]
          Length = 419

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/400 (22%), Positives = 175/400 (43%), Gaps = 27/400 (6%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQV-DLETKYNTLVK---VQGETIDHLSEGVAVFGPD 453
           +   V  T N  G    + E +      LE +   LV+      E I+HL  GV +    
Sbjct: 39  KRYEVRYTGNAYGEVADLGETINDLATSLEEQNLELVQNDKRLYELINHLVIGVMLIDEH 98

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             IK+ NPA   +   + ++L   +++    +    +  E               +E+++
Sbjct: 99  RIIKMVNPAMSVILGEDVSQLVGNSYVEATKSYGLSHMIEMAYQK----------NEQQN 148

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            +       D +++ +I+P+   +     + V         L      +R+ ++++  FV
Sbjct: 149 DEIYFYYPKDKIVDANIVPIDGKEPGEQNLIV---------LLYDITEIRRLEKVRTDFV 199

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            + S+EL++P+T + GF++ L    +        Q++E + A S+ L  LVNDIL+L+ +
Sbjct: 200 TNASHELKTPVTALKGFSETLLDGAMED-KEVLKQFLEIMLAESSRLDFLVNDILELSKL 258

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +   + L    I L + +    Q +  K  E  +++ +I +  L     D  RL QI + 
Sbjct: 259 EQKQVPLKIEEINLTEAVISTFQLVKQKADEKKMKLNIIEEDNL-FITGDSSRLKQILAN 317

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQR 751
           +++NA+ ++ +   V +   ++N   +  V +NG  IPED    +F RF           
Sbjct: 318 LINNAVVYTQESGEVEVTIKKENNFAVIKVSDNGIGIPEDEQDRIFERFYRVDKARSRNS 377

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGLSIV+  +    G +++ S     TT   ++P +
Sbjct: 378 GGTGLGLSIVKYLVENLNGFITVESKLGLGTTFIVKLPIQ 417


>gi|87307297|ref|ZP_01089442.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87290037|gb|EAQ81926.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 1138

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/399 (23%), Positives = 173/399 (43%), Gaps = 34/399 (8%)

Query: 413 IWMFENLTVQVDLETKYNTL----VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           + + E++T ++    K  T      +   + I   S GV +   DG+I+  N  F  +  
Sbjct: 580 MALAEDMTQELRASEKIATQSAEEAERLAKIIRRTSNGVIITDIDGKIEWINDGFTRISG 639

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---V 525
            +    + G   R++       Y  +   D  A +  +F  +  +    +    D    V
Sbjct: 640 YQLEE-ALGKSPRDL------LYGPNSNLDAIARLEDAFRLQAPTNSEIVNYAKDGREYV 692

Query: 526 LEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFV 573
           +   I PL +        M+   ++T+   AE  L   N  L        +A +IK+ F+
Sbjct: 693 VATEIAPLLDTSGTLTGFMMIENDITEKCAAEARLKAVNAELMLAHQDAERASKIKSEFL 752

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+T I+GF+DLL     G    ++ + V  I  +   LL L+NDILDL+ V
Sbjct: 753 ANMSHEIRTPMTAIVGFSDLLLEQ--GMSEEEKRKSVGTIQRNGNHLLELINDILDLSKV 810

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           ++G   +    +   +++ +V + +  +      R+++   G L  +  +D  RL Q   
Sbjct: 811 ESGKFDIELRDMDPTEVIRDVHELLNERAITQENRLQIELKGALPQTIHSDSTRLKQALF 870

Query: 693 KILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            ++ NA+ F+ +   V + A  D  +   IF V ++G  +  +  + +F  F        
Sbjct: 871 NLVGNAIKFT-QNGVVKVIAECDFAHEQMIFQVIDSGIGMSPEQLEQIFQPFRQADASTT 929

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           R   G GLGL+I +    L GG V + S     ++   R
Sbjct: 930 RKFGGTGLGLTITKQIAELLGGDVRVESQSGVGSSFTLR 968



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 53/161 (32%), Gaps = 27/161 (16%)

Query: 290 GIAIDVSKE--------ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL--W 339
            +A D+++E            ++     +I+   +  + I D +  +++ N  F  +  +
Sbjct: 581 ALAEDMTQELRASEKIATQSAEEAERLAKIIRRTSNGVIITDIDGKIEWINDGFTRISGY 640

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
           +++ A L  +P         R     P        +       ++    +   +  +G+ 
Sbjct: 641 QLEEA-LGKSP---------RDLLYGPNSNLDAIARLEDAFRLQAPTNSEIVNYAKDGRE 690

Query: 400 LHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLV 433
             V     P         G + +  ++T +   E +   + 
Sbjct: 691 YVVATEIAPLLDTSGTLTGFMMIENDITEKCAAEARLKAVN 731


>gi|170726058|ref|YP_001760084.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811405|gb|ACA85989.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1168

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/512 (19%), Positives = 188/512 (36%), Gaps = 37/512 (7%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           K   +    T    IL        I D    +   N +   L+     ++        + 
Sbjct: 229 KAKELEGANTRLNTILSAAVDGFIIIDVYGVITQVNPAICRLFG----YMEDEIVGKNVS 284

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RGG 411
            F+ S  +       K + E      + +       H  +G    + ++ +         
Sbjct: 285 IFMPSYERHTHNAFLKRFIEGKREAVERNGREFMALH-KDGNLFPIELSISKMTIEKEIM 343

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + + ++L+     E +      +   T++   + +      G+I+  N A   L+   +
Sbjct: 344 LLGLVKDLSDIKQKEIEAKRTESILLATLEASQDALITIDIAGKIQEFNEAASQLFG-HD 402

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFA------AIITSFDDERKSLQGTLELLSDSV 525
                G  +  +  T        +G + F       AI  S +     L G     S   
Sbjct: 403 KESVIGEQLAEVIFTDIEKACFKEGLEEFRQTGDGPAIKKSIELMSMKLDG-----STLP 457

Query: 526 LEYSIIPLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  +IP+     +     + D    +  E  L    E      + K+ F+  +S+E+RS
Sbjct: 458 IELKMIPVQLGDDIFLTAFIHDISKRMEYELQLKNAKEEAESGSKAKSRFLATMSHEIRS 517

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++G  +LL  S    LN +Q  Y +    + T LL+ +NDILD + ++AG M L  
Sbjct: 518 PLNAVLGSVELLLDSM---LNKEQRLYAQTAREAGTALLSTINDILDFSKIEAGQMALET 574

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
            +     L+++V Q +A K  E  + +    +  +   V  D QRL Q+   ++ NA+ F
Sbjct: 575 ESFSPAKLVSQVMQILAPKAAEKGVNLATFINRNVPEIVKGDAQRLRQVLHNLVDNAIKF 634

Query: 702 SSKGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           S  G  + ++     +         +V + G  +     + +F  F      H    +G 
Sbjct: 635 SDSG-CISVEMWIPDSHHQEVQLYCTVTDEGIGVSLSAQEKLFQEFSQVHDQHNTSYKGT 693

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           GLGL+I    I + GG + +SS     +    
Sbjct: 694 GLGLAICSELITMMGGKIELSSRLGHGSCFRF 725


>gi|322417779|ref|YP_004197002.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320124166|gb|ADW11726.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 1084

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 124/243 (51%), Gaps = 3/243 (1%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R    L + N  L + D +++ F+  VS+ELR+PLT+I  F+++L   ++     K+ ++
Sbjct: 809  RRTAELEQANTRLLELDRLRSDFLSTVSHELRTPLTSIRSFSEILLRYEVDD-PEKRRKF 867

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            V  I++ +  L  ++ND+LDL+ ++AG ++L+   + L+ +      +    M E  ++ 
Sbjct: 868  VAIIASEAERLTRMINDLLDLSRIEAGRLELHPEPLELDAVFARAVGTAQPLMAEKGLQS 927

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +V  +  L   +AD  R+ Q+ + +LSN++ FS +G T+ L   R     + SV + G  
Sbjct: 928  RVEIEAGLPQVLADADRMHQVLTNLLSNSVKFSPEGGTIRLGGRRQGEFALISVTDQGPG 987

Query: 730  IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IP D  + VF RF  V    +    G GLGL+I    +   GG + + S        +  
Sbjct: 988  IPADRLEQVFERFHQVRTPQKSHALGTGLGLTISREIVEKMGGRIWVESELGAGAVFSFT 1047

Query: 788  IPS 790
            +P 
Sbjct: 1048 VPL 1050


>gi|294497707|ref|YP_003561407.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294347644|gb|ADE67973.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 957

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 159/369 (43%), Gaps = 21/369 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E++++ L+    + ++ + EG+ +    G I   N     L++ E               
Sbjct: 454 ESEHDRLL--SQDILNSIQEGMQLVDTSGTILQVNTKISELFQYEHQSGLLQLSRDQWLD 511

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQTMLTFV 543
             S+          +   I   +   KS    L  E     +  YS     N Q      
Sbjct: 512 ALSQKVENIQQLRQYVEAICKGEQVEKSFVYYLYTEGKRKVIKVYSEYVYRNRQMFGVLF 571

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              D  +             + D++K+ FV  VS+ELR+PL +++GFT+L+    L    
Sbjct: 572 VHRDITK-----------EFEVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLK--E 618

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y+  I   +  L +L+ND LD+  ++AG    +     +  L+ +V +    K+ 
Sbjct: 619 ERQKKYLTTIYQEAQRLTSLINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEV--QKIQ 676

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            +     +ISD +  + + D+ +LLQ+F+ ++SNA+ +S  G  V +K  +        +
Sbjct: 677 TSKHEFDMISDQEHFTVMGDKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDI 736

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP +    +F +F    +    +  G GLGL+IV+  +  HGG +++ S  +  
Sbjct: 737 QDEGIGIPSEALGQLFTKFYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKG 796

Query: 782 TTINCRIPS 790
           TT    +P 
Sbjct: 797 TTFTVVLPL 805


>gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 581

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 14/278 (5%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           EL+ D+  +Y I      Q   T    ++  R    L + N  L ++  +K+ F+ ++S+
Sbjct: 149 ELIEDNYRQYRIN--QQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANMSH 206

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+  I GF +LL  +    LN +Q +Y   I  ++  LLNL+NDILDLA ++AG +
Sbjct: 207 ELRTPMNAITGFAELLAET---PLNQEQDEYCRTIRQAAAALLNLINDILDLAKIEAGKL 263

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSN 697
            L      L++LL  V+        +  I I +   +G   +   D  RL Q+   +L N
Sbjct: 264 DLEAVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGN 323

Query: 698 AMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           A+ F+ +G  V L+      A D     F+V+++G  I     +++F +F        RR
Sbjct: 324 AIKFTEQGG-VELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTRR 382

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I    + L GG + +SS     +T +  I
Sbjct: 383 FGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEI 420


>gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1233

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 120/712 (16%), Positives = 245/712 (34%), Gaps = 97/712 (13%)

Query: 156 EGRVSGSCAFLRILS-LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           +G + G   +  + + L GI S+      +  +L +    ++ L+D+    ++  D  G 
Sbjct: 266 DGFLIGLLTWTDVAAVLSGIVSD-----AETARLRDQADRYRDLYDNAATGLFRLDHQGR 320

Query: 215 ILWANISYKKNTETEGIV--FQKAIGESRKL-FKEEIKKRMISSSALEKN---FCETVST 268
            +  N +  +      +    +++   +  L      ++ ++  +  + +   F      
Sbjct: 321 PVAVNAALSRMLGYRDVADCLRQSRQPAHPLRLDGPSRRELMPRALSQADPVTFEARGPR 380

Query: 269 LEHGNNKSYKIVRVL-----NSFGEAGIAIDVSKEITVND--QLTHTYEILHNLTVAIAI 321
            E G  +    VR +        G  G   DV +               ++ + T  I  
Sbjct: 381 REGGYRRLACSVRAVRDAYDQPTGFEGACADVPQAAVPGGPSDDAGYRSLIEHQTELICR 440

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           FD    L F N ++   W               L          P+       +      
Sbjct: 441 FDPAGRLIFVNAAYARYWGKTPEVCLAENFQPAL---------HPDDAAMVARRVASLCP 491

Query: 382 YKSSETHKDTWHLPNGQTL---HVIVTSNPRGGTIWMFE----NLTVQVDLETKYNTLVK 434
           ++ +  ++     P+G+               G +  ++    ++T +   E       +
Sbjct: 492 HRPTTGYEVRVLRPDGRARYQRWTRRAIFDAAGELVEYQAVGRDITPRKLAEQSLKRRAE 551

Query: 435 ---------------------------------------VQGETIDHLSEGVAVFGPDGR 455
                                                       +  + +GV +  P+  
Sbjct: 552 ELHVLAEEKNAEAAALADRLGAALADGRRLADALREKTFFLDAVLAGVQDGVCLLSPEME 611

Query: 456 IKLSNPAFRSLWKTEENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           +   N + R ++ +    +    H     ++A C    +         AI     D+   
Sbjct: 612 VLAVNRSLRGMYASRGEIVGQRCHEVYHGLSAPCQDCPSLRAMATRKLAISVVPKDDPGD 671

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G +EL    +L+ +      A  +    +VT   + E  L    E    A + K +F+
Sbjct: 672 SAGWVELFCYPMLDAAGSV---AAVVEIVRDVTAGKKLEAELAAALERAEAASQAKGAFL 728

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  ++G+  L+   +   L   Q Q +  +  S+  LL+++NDILD + +
Sbjct: 729 ANMSHEIRTPLNAVLGYVQLMLRDR---LEPAQRQRLAVVEESAATLLSIINDILDYSKI 785

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           +AG +++   +  L   L  V +       E  + + +  D  L  S   D  RL QI  
Sbjct: 786 EAGRLEIKAESFDLAQCLAAVVKEQEVLAREKGLTLDLQLDPGLPGSVRGDGLRLRQILR 845

Query: 693 KILSNAMDFSSKGSTVILKAAR-----------DNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            +++NA+ ++  GS V L+A+            +     F+V + G  IP D   ++F+ 
Sbjct: 846 NLVNNAVKYTEHGS-VTLRASLLDRSPCPTGSGERVTLRFAVIDTGVGIPADQLPAIFDS 904

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F        +R  G GLGL+I      L  G V + S     +      P +
Sbjct: 905 FTQVDGGLTKRQAGTGLGLAICRRLAGLMSGEVFVDSVAGKGSVFWLECPFE 956



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/462 (12%), Positives = 130/462 (28%), Gaps = 70/462 (15%)

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF-- 199
            L A ++    +   GR  G  A   +  L     ELAE T+        ++        
Sbjct: 123 LLAAPSRRLAVVDAAGRAVGMLAPFHVARLGVALDELAERTVASAMTRTVVTARAGEALP 182

Query: 200 ------------------DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
                             D +   V+    A  +L      +       +    A    +
Sbjct: 183 MVLARMTRLGVGGVVVARDDVPCGVFTARDAVRLLAGGADIRDMAVDAAMSAPVATVAPQ 242

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
               E +    +  +   +           G      +  VL+        +  ++   +
Sbjct: 243 LPLAEGLAG--MDGAGAGRLVVADPDGFLIGLLTWTDVAAVLSGI------VSDAETARL 294

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI----DLAFLATNPSNDELLE 357
            DQ     ++  N    +   D        N +   +       D    +  P++   L+
Sbjct: 295 RDQADRYRDLYDNAATGLFRLDHQGRPVAVNAALSRMLGYRDVADCLRQSRQPAHPLRLD 354

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMF 416
                  +P     +   +     +++    ++  +     ++  +  +  +  G     
Sbjct: 355 GPSRRELMP-----RALSQADPVTFEARGPRREGGYRRLACSVRAVRDAYDQPTGFEGAC 409

Query: 417 ENLTVQV-----DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            ++           +  Y +L       I+H +E +  F P GR+   N A+   W    
Sbjct: 410 ADVPQAAVPGGPSDDAGYRSL-------IEHQTELICRFDPAGRLIFVNAAYARYWGKTP 462

Query: 472 -----NRLSPGTHIRNIAATCSRY-----YNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                    P  H  + A    R      +  + G+++           ++  +  +   
Sbjct: 463 EVCLAENFQPALHPDDAAMVARRVASLCPHRPTTGYEVRVLRPDGRARYQRWTRRAIFDA 522

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +  ++EY  +            ++T    AE++L  + E L 
Sbjct: 523 AGELVEYQAV----------GRDITPRKLAEQSLKRRAEELH 554


>gi|90418499|ref|ZP_01226411.1| putative two-component signal transduction histidine kinase
            [Aurantimonas manganoxydans SI85-9A1]
 gi|90338171|gb|EAS51822.1| putative two-component signal transduction histidine kinase
            [Aurantimonas manganoxydans SI85-9A1]
          Length = 1302

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 221/644 (34%), Gaps = 48/644 (7%)

Query: 175  YSELAE--TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
              E       LK   ++      + + D+        D AG IL  N + +         
Sbjct: 530  REESIRNTVELKTHAIAARERENRAIVDTAVVGFIVLDCAGHILSVNRAVEAIFGHTADE 589

Query: 233  FQKAIGESRKLFKEEIKKRMISSSALEKNFCET----VSTLEHGNNKSYKIVR-----VL 283
             +    E+   +       + ++    +   ++     +  + G      + R       
Sbjct: 590  IRNRHVETILSYDAITAVTLATAVGEGEPASDSPVVIRTRSKAGKPLYLDVQRNDWSTES 649

Query: 284  NSFGEAGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFDQNRYLQFHNRSFV-ELWE 340
                   I  DV+ +    + L       ++      I +FD +       +SFV + W+
Sbjct: 650  GDLRHTLIIRDVTAQRLAVEALEANERRWNHALEGAGIGVFDIDFR---RGQSFVSDTWK 706

Query: 341  IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF---SVYKSSETHKD------- 390
                 L  +PS+D        A   PE L      E+ +   + ++S   ++        
Sbjct: 707  ---QMLGFSPSDDIEPRAEWLARIHPEDLPALKAVEDAYYDTATFRSEAEYRIRRKDNVW 763

Query: 391  TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             W   +   +       P    I     +T     E    +  +     +     G+A+ 
Sbjct: 764  IWLRSDSIVIERDKAGQPM-RVIGTQSEITELKTAEAALRSSEERVRLALRDAPVGMAML 822

Query: 451  GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              +G     N A  +     E+ L     +  +        +      + A  + ++  E
Sbjct: 823  DLNGGWIRVNQALCAFLGYSEDELLQ-RDLAAVTHPDDVGIDREQMAQMIAQTLPTYQVE 881

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            ++ L      L   +   S++   + Q  L       + R E             D +KN
Sbjct: 882  KRFLHRDGRAL-WCLFSVSLVHDHDGQAYLVSHVQDINDRKE------------MDRLKN 928

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             FV  VS+ELR+PLT+I G   L++      +    ++ +    A+   L+ L+NDILDL
Sbjct: 929  EFVATVSHELRTPLTSIRGSLGLIQGVMAKDVPPAATRLLTIAVANCERLVALINDILDL 988

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQ 689
              + AG+M      +  N  +++  ++         + +   + GK       D  R  Q
Sbjct: 989  EKITAGMMAFETVLVDPNAAVSQAIEANQPYFARFGVSVAFNATGKGEAWIPVDPARFQQ 1048

Query: 690  IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            + + +LSNA  FS +G  + +     +G    SV ++G+ IP +    +F+RF       
Sbjct: 1049 VLANLLSNAAKFSPQGGIIDVAIEPIDGAIRISVTDHGTGIPAEFQSRIFDRFTQADSSA 1108

Query: 750  QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             R   G GLGL I    I   GG +  ++           +P +
Sbjct: 1109 TREKGGTGLGLHITRQIIETMGGTIDFANVPGAGARFWIDMPCQ 1152


>gi|53712464|ref|YP_098456.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215329|dbj|BAD47922.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 637

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/506 (19%), Positives = 204/506 (40%), Gaps = 24/506 (4%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D      + D       +L    +A   +D           +  +  +  A +      +
Sbjct: 12  DTGDLENLKDNYQKITSVLAGHQIAFWEYDIPTGECNFTDEYFHILGLKEAGIIFR-DIN 70

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFS----VYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           +   F    + +  Q  +    E+       V +      +T  L +    +     N  
Sbjct: 71  DFYRFAHPEDVISYQTTFARMLESETKISQIVVRCVGRQGETIWLEDNFIAYKKNKENGS 130

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              I    N+T + + E +   L +   + I+ L E          I + +  F      
Sbjct: 131 DKIIAYTANITSRCEKEVQIRQLEERNRKIIEALPE---------FIFIFDDNFFITDVL 181

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLSDS-VL 526
                     +  +     R    S+  DLF + I       + K ++  +++ +     
Sbjct: 182 MAPDTELLHPVEVLTGADGRSIYSSEVSDLFISSIHECLKSGKLKEIEYPVDVEAGRHFF 241

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +  I P    + +    ++ D +R  + L E  +   +AD +K+ F+ ++S+E+R+PL  
Sbjct: 242 QARIAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNA 301

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     
Sbjct: 302 IVGFSEIIA---LTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTE 358

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++ L++EV +    KM +  +++ VI   +    + DR R+ Q+    LSNA+  + +GS
Sbjct: 359 MSGLVDEVDKVHRLKM-KKGVKLNVIRPSEEIWILTDRNRVTQVLFNFLSNAIKNTIEGS 417

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            +     ++       V + G  I ++    +F RF       Q  G GLGL I +S + 
Sbjct: 418 -ITFGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVE 474

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
             GG + + S     +T    +P+++
Sbjct: 475 RLGGRIEVESELGQGSTFILYLPNRQ 500


>gi|242278432|ref|YP_002990561.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242121326|gb|ACS79022.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 802

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 124/664 (18%), Positives = 239/664 (35%), Gaps = 88/664 (13%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKK-NTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
           KVL D+    +   +  G ++  N         T   +  K I +         +K M  
Sbjct: 8   KVLLDANTQSILLLENDGTVIHVNRIVADILKTTPESLTGKNIFDYLPPELAAYRKHMFD 67

Query: 255 SSALEKNFCETVSTLEHGNNK-----SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
           +        E +   +    +      Y I+        A  A D+++ I    +L H+ 
Sbjct: 68  NVVKSG---EPIKFQDTREGRIILHSHYPIIENDKVSRVAIYAEDITEVINKERELAHSK 124

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRS--------------FVELWEIDLAFL--------- 346
            +   L   I  F+  + L    +S              F+ L + +   L         
Sbjct: 125 HLQSVLYEIICQFNSAKDLNELMQSIHEIMLKELKAKNFFIALIDQEQEELVFTYCVDEG 184

Query: 347 -ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--------THKDTWHLPNG 397
            +  P    + +   +   L    N +  +     + KS E           + W    G
Sbjct: 185 ISEYPPIQNIFDPDNNRISLLPIKNNEIVQLTRQEIIKSVEHGSLEVMGRIPEIWI---G 241

Query: 398 QTLHVIVTSNP-------RGGTIWMFENLT-------------VQVDLETKYNTLVKVQG 437
             + V  T              I+  E++               +   +       +   
Sbjct: 242 VPMRVRNTPIGVLVIQDYENSDIFCEEDIQLFSACSHQIALAIERKKYDLAIRESEEQYR 301

Query: 438 ETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              ++    + +  P  G+I  +N A    +      L             SR    S+ 
Sbjct: 302 ALFENNHSVMLIINPQTGKILDANTAATEFYGYSHTELQAKNIFD--INVLSRAEVISNM 359

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAER 553
            +   A  T+F  + +   G ++      +E    P  +      +    ++T  ++ E+
Sbjct: 360 SEAHKADRTNFIFQHRCKNGDIKD-----VEVFSGPFNHNGKTLLISIIHDITKRLKNEK 414

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L+   E+  +A++ K+ F+ ++S+E+R+PL  ++G   ++ ++K   LN +    +   
Sbjct: 415 ELSAAKESAIRANKTKDEFLANISHEIRTPLNGVMGMLQVMNSAK---LNQEHRNCISVA 471

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             SS  LL +++DILDL+ V+ G + L      LN LL E       +  +  + +   I
Sbjct: 472 LQSSRNLLRVLDDILDLSKVEMGTLDLFEDKFSLNKLLEESINLFKPQAEKKEVDLSYSI 531

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIFSVKNN 726
                  +  D  R+ QI   ++ N++ F+  G  + ++A       +D  +  F+V + 
Sbjct: 532 FPETESYYFGDEGRIRQILFNLIGNSIKFTDHGE-IRVEARAGPGTCQDKNNLHFTVSDT 590

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPED  + +F+ F         + +G GLGL+IV+  I L  G + I SS    TTI
Sbjct: 591 GIGIPEDYQERIFDSFTQVDGSLSRRYKGAGLGLAIVKRLIELMEGSIKIESSLHHGTTI 650

Query: 785 NCRI 788
           +  I
Sbjct: 651 SFTI 654


>gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 966

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/513 (19%), Positives = 203/513 (39%), Gaps = 38/513 (7%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
               + D +  +   L  +   + +      +   N +  E+              +E++
Sbjct: 37  ASAEIIDTIKRSQSFLQQMGCIVIVLSLEGKIVEWNHAAEEISGY---------RREEVI 87

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQTLHVIVTSNP------- 408
           +       LPE +        + ++    + H        +G+   V     P       
Sbjct: 88  DRNYWMLCLPESVRDGVKFRYLQAIATQQQVHVHHILLGSDGRQQQVNFQIVPWRNYCGE 147

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             G I   E +    D   +     +   + I +L   +A+F  + R    +  +    K
Sbjct: 148 ILGAIVTGEPVACSPDGSCEQELECERLQQLISYLPLPIAMFDTEMRYLAYSEGWIQHLK 207

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   L    H  ++       +  +    L    +++ +D      G+L     +V  +
Sbjct: 208 PQIYSLIGLNHY-DVFPNVKNDWKLAHKKALRGEKVSALEDSWIREDGSLIYHGWTVGPW 266

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +L  + + +       L E   A   A + K+ F+  +S+E+R+P++ ++
Sbjct: 267 YRNSGEVGGVILVIIPLNN-------LVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVL 319

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +LL  +    L  +Q  Y + I  S+  LL ++N+ILDL+ ++AG   L      L 
Sbjct: 320 GMVELLMQTH---LTPQQKDYTQTIYRSAKHLLTVINEILDLSKLEAGETHLESHDFDLQ 376

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
           D L  V   +A K  +  + + ++ +  L  ++  D  RL Q+   +++NA+ F+  G  
Sbjct: 377 DCLETVVDLLAVKAEDKQLELIILLEPNLPRYLKGDGMRLQQVLINLVNNAIKFTKSGHI 436

Query: 708 VI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           +I       ++D+ +  F++++ G  I +++   +F  F   S+A   Q  G GLGLSI 
Sbjct: 437 IIRVTPRVISQDHINIYFAIEDTGMGISDELQPQLFQPFSPASSATNRQYGGTGLGLSIC 496

Query: 762 ESFINLHGGHVSISSSDEGVTTINC---RIPSK 791
           +  +NL GG + + S +E  +        +PS+
Sbjct: 497 QHLVNLMGGEIGVKSQEEEGSIFWFNATFLPSE 529


>gi|15614144|ref|NP_242447.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174198|dbj|BAB05300.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 594

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 166/391 (42%), Gaps = 28/391 (7%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  +++   T+ N   +     +  +++GV      G++ ++NP
Sbjct: 222 ILTHDEIGQLAIAFNRMRRELNRNVTELNQEKEQLSRILSSMADGVITLDKRGKVMVTNP 281

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +          H         +         L+  ++    ++   L   ++  
Sbjct: 282 PAERFIQAW--------HYEQGLVPSEKNELPQAIHQLYQQVVALESEQMTELD--VQGR 331

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S ++L   + PL +   +   V V   +  ER          + D+++  F+ +VS+ELR
Sbjct: 332 SWAIL---MTPLYDNSYVRGAVAVIRDMTEER----------RHDKLRKDFIANVSHELR 378

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +     G+ + ++ +  + I   S  +  LVN++LDLA ++AG + L+
Sbjct: 379 TPISMLQGYSEAIIDDIAGT-DQEKKELAKIIYDESLRMGRLVNELLDLARMEAGHIDLS 437

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
           Y  I +      + +       E  + +  I  G  G     D  RL Q+ + +LSNA+ 
Sbjct: 438 YEEIEVKTFCERITRKFQGLAKEQQLTLDFIYRGDEGKRIQVDPDRLEQVLTNLLSNAIR 497

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
            +  G TV L            V + G+ IPE+    VF RF        R   G GLGL
Sbjct: 498 HTDPGGTVQLACHVMENGVKIDVTDTGTGIPEEDLPYVFERFYKADKARTRGRSGTGLGL 557

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +IV++ ++ H G +S+ S  +  TT     P
Sbjct: 558 AIVKNIVDAHSGEISVHSKQQEGTTFTAFFP 588



 Score = 38.0 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 83/251 (33%), Gaps = 48/251 (19%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR---SFVELWEIDLAFLATN 349
            +V++     +QL+    IL ++   +   D+   +   N     F++ W  +   + + 
Sbjct: 244 RNVTELNQEKEQLSR---ILSSMADGVITLDKRGKVMVTNPPAERFIQAWHYEQGLVPS- 299

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                        N+LP+ +        ++    + E+ + T     G++  +++T    
Sbjct: 300 -----------EKNELPQAI------HQLYQQVVALESEQMTELDVQGRSWAILMTPLYD 342

Query: 410 G----GTIWMFENLTVQVD-----------LETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
                G + +  ++T +             +  +  T + +     + + + +A    + 
Sbjct: 343 NSYVRGAVAVIRDMTEERRHDKLRKDFIANVSHELRTPISMLQGYSEAIIDDIAGTDQEK 402

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY----YNESDGWDLFAAIITSFDDE 510
           +        + ++            + ++A   + +    Y E +       I   F   
Sbjct: 403 K-----ELAKIIYDESLRMGRLVNELLDLARMEAGHIDLSYEEIEVKTFCERITRKFQGL 457

Query: 511 RKSLQGTLELL 521
            K  Q TL+ +
Sbjct: 458 AKEQQLTLDFI 468


>gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 657

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 159/380 (41%), Gaps = 31/380 (8%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++   +  ++             I    +G+ V    G ++  NPA  SL+         
Sbjct: 160 QDNLEKEQIKAALAKSETQFQVLISKNPDGIVVIDSGGIVRFINPAALSLF--------- 210

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                      SR  +E  G  L   ++   + E     GT    ++ V +  ++ +   
Sbjct: 211 -----------SRQEDELLGQVLGFPVVGEDNTEVDVRTGT---GANRVAQMRVVEIEWQ 256

Query: 537 Q---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +++  ++T+  + E    +  E    A+ IK+ F+  VS+ELR+PL  I+G++ L
Sbjct: 257 GKKGYLVSLRDITEQKQVEEERIQLLEKAEAANRIKDEFLAIVSHELRTPLNPILGWSKL 316

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+T KL     K  Q +E I  ++++   L++D+LD++ +  G + L    + L  ++  
Sbjct: 317 LRTRKLNQ--DKVDQALETIERNASLQAQLIDDLLDVSRILRGKLNLQTLRVDLVRVIQA 374

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +++       +I I    D  +G    D  RL Q+   +LSNA+ F+ KG  + ++  
Sbjct: 375 AIETMRLAAAAKSIEIDTQLDSTVGFVSGDPNRLQQVVWNLLSNAVKFTPKGGRITVRLQ 434

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
             +      V + G  I  D    +F+ F        R   G+GLGL+IV   I LHGG 
Sbjct: 435 EIDSQAQIQVSDTGQGISPDFFPYIFDYFRQENSTTTRSVGGLGLGLAIVRHLIELHGGR 494

Query: 772 VSISSSD-EGVTTINCRIPS 790
           +   S       T    +P 
Sbjct: 495 IEAESEGIGQGATFTVTLPL 514


>gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 874

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           N + K++   +  + +G+      G++   N A   ++      +        +      
Sbjct: 235 NRMAKLEATIMHTVMDGLITMDSSGKVLSFNHAAEGIFGYAAAEVVGEQITMLMPEPYRS 294

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVT 546
            +++     L  A         + +    +  +   +  S+  +        +    +V+
Sbjct: 295 QHDDYVQRYLQGAAPRVIGSAGRHVTAQRKDGALLPIRLSVNEMVFEGERLFVGLVADVS 354

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + ++ ERAL E  E    A+  K+ F+  +S+E+R+P+  I+G   LL   +   L+ +Q
Sbjct: 355 ERLQEERALIEAKEQAEAANMAKSRFLAVMSHEVRTPMNGILGMLGLLNDRR---LDGQQ 411

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++     S+  +L L+NDILD + ++AG ++L  S      +L  V      +     
Sbjct: 412 QEWLATAQESAESMLTLLNDILDFSKIEAGHLELEQSAFSPEQILKGVHDLFLPRATAKG 471

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720
           I +++     L ++V  D  RL Q+   ++SN + F+ +G  V ++ A+           
Sbjct: 472 ITLELEQGANLPAWVQGDPGRLRQVLMNLVSNGIKFTHQGG-VTMRVAQQAKREDSLLLQ 530

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V+++G  IP      +F  F      +  +  G GLGL+I    ++L GG + + S  
Sbjct: 531 FEVQDSGIGIPPQQLTQLFQPFNQLDPSYSRKYGGSGLGLAICRHLVDLMGGEIRLESPP 590

Query: 779 EGVTTINCR 787
            G +     
Sbjct: 591 SGGSRFTFT 599


>gi|149187193|ref|ZP_01865491.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148838729|gb|EDL55668.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 934

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 169/393 (43%), Gaps = 30/393 (7%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           W+ +++  +++ E   N   + Q    ++H S+ + +   DG     N AF  L   +  
Sbjct: 257 WLQQHVEAKLNKELLDNEKERSQLAMVVEHASDAIVITNRDGLTTWVNSAFEKLSGYQLT 316

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL----ELLSDSVLEY 528
                     I           D        I+    +  ++Q  L    +      ++ 
Sbjct: 317 --------ETIGKKPGDLLQGIDTSKEEIKRISDELSQGHTVQSELLNYHKDGRPYWIDI 368

Query: 529 SIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            I P+ N      Q +    + +D  + E+ L +  +    ++  K++F+  +S+ELR+P
Sbjct: 369 VITPIRNIHNQIEQFIAVERDSSDRKQLEQNLQQAVQVADASNRAKSTFLATMSHELRTP 428

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G   +L++S   + + +Q   +  +  S   LL+L+NDILD++ ++ G ++L   
Sbjct: 429 LNGILGMAQILESSVTQAQHKEQ---LSVLLESGNHLLSLLNDILDISKIEEGKLELEDI 485

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
              +++L + +  + +   +E  I+ K+ +    G SF  D+ R+ Q+   +L NA+ F+
Sbjct: 486 DFAIDELCSPIISTYSAICNEKGIQFKLNNQLPSGKSFRGDKSRIRQLIFNLLGNAVKFT 545

Query: 703 SKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
            +GS  ++        ++        V + G  IP D   ++F+ F        R   G 
Sbjct: 546 ERGSVELVFSNSQSSMSKSKEQLNIDVIDTGVGIPNDRLATIFDPFTQAEASTTRQFGGT 605

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL+IV+   NL GG   +SS     +     
Sbjct: 606 GLGLAIVKKLSNLMGGDAYVSSELGKGSKFTVT 638


>gi|281355046|ref|ZP_06241540.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317926|gb|EFB01946.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1559

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 161/372 (43%), Gaps = 21/372 (5%)

Query: 426  ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            + +       + +  D+++  + +F P+  +  +N A  S ++  EN             
Sbjct: 1036 KQQLRKSEYERQQIFDNINTPILLFDPNLNLIRANRAAYSAYQAVENSSDL--------- 1086

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
             C R + +      +  +  + +  +   +       D ++    +   N +      N 
Sbjct: 1087 PCYRIFCKQPQVPDYCPVRRTIETLQPQQRQVCVAGHDYMILTKPLFDSNGKFTYVLENA 1146

Query: 546  TDS---VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +     + ++ LTE  EA + AD  K+ F+  +S+ELR+PL  +IGF++LL++  +   
Sbjct: 1147 VEITQLNQRQKKLTETMEAAQAADRAKSYFLATMSHELRTPLNAVIGFSELLQSGPMP-- 1204

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +Q   +  I+ +   LL L+NDILDL+ ++AG M +    +   + L  V        
Sbjct: 1205 DQEQQNALRAINVAGATLLELINDILDLSKLEAGKMDIIPELLDPQEFLQTVSAIFTHTA 1264

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----G 717
                + + V     +     DR+RL Q+   +L NA  F+  G  V+L+AA +      G
Sbjct: 1265 RTRKLSLTVTVPPAMPHLKFDRKRLRQVLVNLLGNAFKFTETGG-VLLEAAFETVNDHFG 1323

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              I  V + G  +  +  + +F+ F    H     G GLGL+I +  +   GG + ++S 
Sbjct: 1324 TLILKVSDTGIGMSPETVRQLFDPFRQ-HHTRDYEGTGLGLAISQRLVARMGGSIEVTSE 1382

Query: 778  DEGVTTINCRIP 789
             E  +T    +P
Sbjct: 1383 PEHGSTFRIVLP 1394



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 83/280 (29%), Gaps = 38/280 (13%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL-WANISYKKNTETEGIVFQKAIGE 239
             +   K     +VF+ L       V   D+   I  + +              ++   E
Sbjct: 355 LQISRLKSRTEQAVFRAL----PVRVVVADETDRIYYFRSGENFDQLGVGNDPHEEFRPE 410

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS--- 296
             +LF++ +++ + +     + +         G        R+          + VS   
Sbjct: 411 LVELFRQTLREVLETGEIQTREYE------LQGRRHKAIFRRLPAELFGVPTVLRVSSDV 464

Query: 297 -----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
                      +        L ++   +   D +  +   N     L       L     
Sbjct: 465 HDLYLARREAQEAEEQLRITLQSIGDGVIATDCSETVTMVNPVAASLTGYSPDELVGRKL 524

Query: 352 ND--ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           +D   ++ +L +  ++   ++       I  +   ++         +G   H+  ++ P 
Sbjct: 525 DDVFHIISYL-NRKRVSSPVSRALASGKIVELANHTDLIA-----KDGTCRHIADSAAPI 578

Query: 410 G-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                   G + +F ++T     E +   ++++Q   ++ 
Sbjct: 579 RDHSGRITGAVLVFRDVTE----EYRRRDMLQMQNSLLNT 614



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/383 (14%), Positives = 110/383 (28%), Gaps = 54/383 (14%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + S++ +  L  ++        ++   S+   V   D +  +   N      T   G   
Sbjct: 460 VSSDVHDLYLARREAQEAEEQLRITLQSIGDGVIATDCSETVTMVNPVAASLT---GYSP 516

Query: 234 QKAIGE------------SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
            + +G             +RK     + + + S   +E      +   +           
Sbjct: 517 DELVGRKLDDVFHIISYLNRKRVSSPVSRALASGKIVELANHTDLIAKDGTCRHIADSAA 576

Query: 282 VLNS-----FGEAGIAIDVSKEITVNDQLTHTYEILHN-LTVAIAIF-----DQNRYLQF 330
            +        G   +  DV++E    D L     +L+  L +A   +     D N    F
Sbjct: 577 PIRDHSGRITGAVLVFRDVTEEYRRRDMLQMQNSLLNTALQIAEMTYFHCGPDGNPKGTF 636

Query: 331 HNRSFVELWE-------IDLAFLATN--PSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
               F   W        +   +L         +  E L S       L + +        
Sbjct: 637 QTGRF---WPRENGVPLLPERWLTAEYVSGFYQGWERLLSGETDEIHLEYSSDYSGKRRY 693

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           ++     +    LP+G+                +   +T     E  Y     +    +D
Sbjct: 694 FEMRVKSE---LLPDGKAER---------EYFGIIREITSGRRNELAYQNTDLLLRTLVD 741

Query: 442 HLSEGVAVFG--PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +L   VAV     D R  + N A   L      R + G +   +     R ++     + 
Sbjct: 742 NLPAYVAVMDVSNDFRYIIWNRAVEELSGIPTIR-AIGRNDAELEREPDRLFSNRQMLEQ 800

Query: 500 FAAIIT-SFDDERKSLQGTLELL 521
                T +  +E +   G + +L
Sbjct: 801 ACRAGTLALQEEYRCPNGEIRIL 823



 Score = 45.7 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 83/274 (30%), Gaps = 29/274 (10%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +   L V + + D+   + +           +   L       E           
Sbjct: 363 RTEQAVFRALPVRVVVADETDRIYYFRS------GENFDQLGVGNDPHEEFR-------- 408

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLT 420
           PE +  + +++ +  V ++ E     + L  G+    I    P         + +  ++ 
Sbjct: 409 PELV--ELFRQTLREVLETGEIQTREYELQ-GRRHKAIFRRLPAELFGVPTVLRVSSDVH 465

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +     +    T+  + +GV        + + NP   SL     + L  G  +
Sbjct: 466 DLYLARREAQEAEEQLRITLQSIGDGVIATDCSETVTMVNPVAASLTGYSPDEL-VGRKL 524

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERK------SLQGTLELLSDSVLEYSIIPLP 534
            ++    S    +     +  A+ +    E        +  GT   ++DS          
Sbjct: 525 DDVFHIISYLNRKRVSSPVSRALASGKIVELANHTDLIAKDGTCRHIADSAAPIRDHSGR 584

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
               +L F +VT+  R    L  +N  L  A +I
Sbjct: 585 ITGAVLVFRDVTEEYRRRDMLQMQNSLLNTALQI 618


>gi|167629252|ref|YP_001679751.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591992|gb|ABZ83740.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 662

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 121/273 (44%), Gaps = 26/273 (9%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+     + +  + + AL    E    A+  K++F+ ++S+E+R+P+  IIG  DLL  +
Sbjct: 339 TLALEKELQERRQMQTALQLAKEEADVANRAKSAFLANMSHEIRTPMNAIIGIADLLWET 398

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN +Q ++V     +   LL L+NDILDL+ +++G   L      L++L+N+    
Sbjct: 399 ---PLNEEQKKFVHIFRDAGNNLLALINDILDLSKIESGKQVLQPVEFYLDNLVNDTIAL 455

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILK-- 711
            +T+  E  + + V     +    + D   L Q+   +L NA+ F+  G+    + +   
Sbjct: 456 FSTRAQEKGLELTVRLPDDIPRLLLGDVGALRQVLFNLLGNAIKFTETGAVSLHIEVADP 515

Query: 712 ------AARDNG---------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
                 A  D              FSV + G  IP +    +F+ F        RR  G 
Sbjct: 516 VVSPSGATADPNPPHFPGQPVHLRFSVIDTGLGIPPEWQDRIFDSFTQVDASLTRRFGGT 575

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL+I +  + L GG + + S     +T    
Sbjct: 576 GLGLAICKRLVELMGGQIWVDSEPGKGSTFTFT 608


>gi|15616588|ref|NP_244894.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10176651|dbj|BAB07745.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 607

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/394 (22%), Positives = 166/394 (42%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V V S    G + M F +LT+++ D  +  +   K     + H+++GV      G++ L 
Sbjct: 230 VNVHSTDEIGQLAMSFNDLTMKLKDALSTRDQEQKKLRSVLTHMTDGVIASDKYGKMILM 289

Query: 460 NPAFRSLWK--TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +     EE + +    + NI+ T    +   + +D   +++  F  E       
Sbjct: 290 NKRAEEMLGVSYEEVQGTLLPELLNISET----FAVDELYDYNDSVLLDFSTEE------ 339

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                D +++ S   +   +  +  +        ER          K ++ +  FV +VS
Sbjct: 340 -----DYLIQASFSVIQEDEGPVNGLITVLHDVTERE---------KIEQERREFVANVS 385

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L    +   N    +++      +  ++ LVND+L L+ +D   
Sbjct: 386 HELRTPLTTMKSYLEALDDGAMNDPN-LAPRFLHVTQNETERMIRLVNDLLQLSKIDTHD 444

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            KLN S + L   L+++         E +I               D+ +L Q+   ILSN
Sbjct: 445 YKLNLSWVDLGPYLHDMIDRHEIIAKEKDIHFIRKITKHATFVEIDQDKLTQVIDNILSN 504

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           AM +S +G  V +       +   S+ + G  IP++    +F+RF        R   G G
Sbjct: 505 AMKYSPEGGDVTITLLHQGHNVRVSISDQGMGIPKESQTKIFDRFYRVDKARARSVGGTG 564

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  ++ HGG + + S  +  TTI   +P
Sbjct: 565 LGLAIAKELVHAHGGEIWVESKYKVGTTIYFTLP 598


>gi|304405930|ref|ZP_07387588.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345173|gb|EFM11009.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 610

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 157/383 (40%), Gaps = 33/383 (8%)

Query: 416 FENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F ++T ++      N   +      + ++S+GV      G + +SN     L        
Sbjct: 247 FNDMTKRLREALSVNEEEREKLASVLANMSDGVVASDESGMVIVSNRRALELLDVNACEG 306

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                +  +    +    +S G  L      + DD             + +L  +  P+ 
Sbjct: 307 CELAMLLGMEGDEAVELLQSGGSRLLR---KNNDD------------GEWLLRVTFTPVH 351

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                 T          E+          K ++ +  FV +VS+ELR+PLT I  + + L
Sbjct: 352 RRDKGTTGTIAVLEDVTEQE---------KLEQSRREFVANVSHELRTPLTTIRSYAEAL 402

Query: 595 KTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
                G+L+ +Q   ++V  I   +  ++ LV D+L L+  D+  + L      + +LL 
Sbjct: 403 DD---GALDERQLADRFVSVIRNETERMIRLVTDLLHLSRFDSNQVPLRRRATSVPELLE 459

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E     A +  +  IR +V  D  +G+   DR  + Q+   ++SNA+ ++  G  ++L A
Sbjct: 460 EAADRFAFQTSQKGIRTEVYIDDAVGTVWLDRDGIDQVLDNLISNAIKYTLDGGVIVLSA 519

Query: 713 AR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
            + +      SV+++G  IP+     +F+RF            G GLGLSI    +  HG
Sbjct: 520 RKPETNALAISVRDSGIGIPKKDLGRIFDRFYRVDKARSRNMGGTGLGLSIAREIVRAHG 579

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G +++ S     TT+   +P+ +
Sbjct: 580 GTITLESELNEGTTVTFTLPAPD 602


>gi|281356981|ref|ZP_06243471.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281316539|gb|EFB00563.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1816

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 139/750 (18%), Positives = 271/750 (36%), Gaps = 94/750 (12%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQN--DCAIKIEGRVSGSCAFLRILSLDGIYS 176
            +      K      +   +G S  ++ E        I+++ R            L GI  
Sbjct: 926  MPIEQAKKFQADDAQAMHQGGSQIIIEELPRPGGRFIRLQTRKVRLHRESGNDLLLGIGV 985

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG--DILWANISYKKNTETEGIV-- 232
            ++ E T    +L     +   + D+L   ++ +D       L  N  + +     G    
Sbjct: 986  DITELTENRNELKKSNELLHAIMDNLPCALFVKDADHEFRYLMYNRVFAEAFGLTGREVI 1045

Query: 233  ----FQKAIGESRKLFKEEIKKRMIS------------SSALEKNFCETVSTLEHGNNKS 276
                 +  + E+ +L  E  +  + +            +             + H + + 
Sbjct: 1046 GRCDPELLLPENARLCGESDRAALEAGGVSDFHEEVILADGHRHALRCIKGVVTHEDGRR 1105

Query: 277  Y------------KIVRVLNSFGEAGIAIDVSKEITV--NDQLTHTYEILHNLTVAIAIF 322
                         ++V  L  +G    A++ + E  +   D  +   E+L  +       
Sbjct: 1106 LLLGISMDVTKEQELVGELQVYGAQQRALNAALESILLSEDFPSAIREVLRQIGE---QA 1162

Query: 323  DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            D +R   F  R + +    +  F  T P     ++ L+    +     W+   +N   ++
Sbjct: 1163 DADRCYIFS-RDYEKQCSCN-EFEWTAPGIAAEIDTLQDLPLILSPA-WEAALQNREVIF 1219

Query: 383  KSSETHKDT--------WHLPNGQTLHVIVTSNPRGGTIWMFEN---------------- 418
             +     D           L   Q   ++VT     GT+W F                  
Sbjct: 1220 SADLDAPDQCAAVREGYETLSRQQIRSILVTGIWLNGTLWGFIGFDYVRKLIPYPEIAEK 1279

Query: 419  -LTVQVDL-------ETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
             LT    L       + +   L + + E    +D +   + ++  +  +  +N A + + 
Sbjct: 1280 MLTATARLIEIALIRKVRQQELERSEYEKKLIMDTIKTPIILYDGEMNLLRANNAAQRIA 1339

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               +   +   HI      C+R +   +       +  S DD  +          D ++ 
Sbjct: 1340 -LIDPAAAAAEHI-----PCNRIFCGEENCPSNCPVRQSLDDHAEHCCEMHIRGKDFLIT 1393

Query: 528  YSIIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             + I L    A  + T +++T+  + ++ LT      + A + K+ F+  +S+ELR+PL 
Sbjct: 1394 ANPILLDGRLAYVLKTMLDITEFNQIQQKLTRAVLDAQNASKAKSYFLATMSHELRTPLN 1453

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             +IGF++LL+   L    S+Q++Y++ I+ +   LL L+NDILDL+ ++AG + +     
Sbjct: 1454 AVIGFSELLRNDTLP--RSEQNEYLQSINFAGNALLKLINDILDLSKIEAGQIVITPERN 1511

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
                L  E+      +  E  +   +  D +L     D  RL QI   +  NAM F+  G
Sbjct: 1512 DFQALCREIYSIFRLQAAEKKLEFTLECDPELPYLYLDNLRLRQILLNLTGNAMKFTKAG 1571

Query: 706  STVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGL 758
            S  I+   R    + G     V + G  I E   K++F  FV +         +G GLGL
Sbjct: 1572 SIRIVIDFRPESDEAGTLTIRVIDTGIGISEQGQKTIFEPFVQDHEVRGSHAYQGTGLGL 1631

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +I    I   GG +++ S     +     +
Sbjct: 1632 TISSRLIGQMGGRMALDSKVGEGSCFTVIL 1661



 Score = 77.7 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 82/524 (15%), Positives = 174/524 (33%), Gaps = 60/524 (11%)

Query: 28   GTIAGMLL-TTIIPIILLIRQRNSLAKKVNETYSFLSEICD-QLSKYHSLLTENNCLTIV 85
            G +AG +L    +      R R  + K V E      E+   +  +    L   N     
Sbjct: 600  GVLAGAVLVFRDVTAEYERRDRLHVQKAVLEKALTAGEMTFFRCDENREFLQAANEAF-- 657

Query: 86   WDGKDETPEIIGQLHQRIDIP--QTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL 143
            W  +D  P+ + +     D+P  Q   + L      +F    +L KA        + F  
Sbjct: 658  WPRRDGKPQKVEEWIYPGDLPELQNCREELFSGKRREFRQLYRLQKA--------EKFR- 708

Query: 144  VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
                  +  +  +                GI  ++     +     N  ++   + D++ 
Sbjct: 709  ----YYEILMFDDISPVSEK-----KEFFGIIRDVTGFRERELGYRNTSALLHDVLDNIP 759

Query: 204  FLVWHRDQAGDI--LWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
              +W ++    +  L  +          E  +  K   E       E  +R  +++  E 
Sbjct: 760  GYIWVKEIEQGLRHLMVSRKVGLLVGQKENELVGKTDAEFLPPESAEQFRRADAAALAEG 819

Query: 261  NFCETVSTLEH-GNNKSYKIV-----RVLNSFGEAGIAIDVSKEITVNDQLTH----TYE 310
                T++  +  GN    K+V     R   +    GI +D+++E+ +  QL        +
Sbjct: 820  RSEVTITLTDRFGNAHDLKVVQTVLARPDGTRLLLGIGVDITRELKMEAQLHEKNRLLED 879

Query: 311  ILHNLTVAIAI---FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
            I  NL   + I   ++++RYL F +R+ ++    +   L      D           +P 
Sbjct: 880  IFDNLPTPLFIKDFYNEDRYL-FASRTCIDALGTEREKLIGRTDFD----------IMPI 928

Query: 368  QLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTS---NPRGG---TIWMFENLT 420
            +   K   ++  ++++   +   +    P G+ + +       +   G    + +  ++T
Sbjct: 929  EQAKKFQADDAQAMHQGGSQIIIEELPRPGGRFIRLQTRKVRLHRESGNDLLLGIGVDIT 988

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSLWKTEENRLSPGT 478
               +   +     ++    +D+L   + V   D   R  + N  F   +      +    
Sbjct: 989  ELTENRNELKKSNELLHAIMDNLPCALFVKDADHEFRYLMYNRVFAEAFGLTGREVIGRC 1048

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                +    +R   ESD   L A  ++ F +E     G    L 
Sbjct: 1049 DPELLLPENARLCGESDRAALEAGGVSDFHEEVILADGHRHALR 1092



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 115/358 (32%), Gaps = 37/358 (10%)

Query: 117  NWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRI---LSLDG 173
             +L      +  +A      EG+S   V  T  D                R      L G
Sbjct: 798  EFLPPESAEQFRRADAAALAEGRS--EVTITLTDRFGNAHDLKVVQTVLARPDGTRLLLG 855

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKNTETEGI 231
            I  ++        +L     + + +FD+L   ++ +D       L+A+ +      TE  
Sbjct: 856  IGVDITRELKMEAQLHEKNRLLEDIFDNLPTPLFIKDFYNEDRYLFASRTCIDALGTERE 915

Query: 232  VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS---TLEHG-----NNKSYKIVRVL 283
                         ++  K +   + A+ +   + +        G       +  ++ R  
Sbjct: 916  KLIGRTDFDIMPIEQAKKFQADDAQAMHQGGSQIIIEELPRPGGRFIRLQTRKVRLHRES 975

Query: 284  NSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNR--YLQFHNRSFVE 337
             +    GI +D+++     ++L  + E+L     NL  A+ + D +       +NR F E
Sbjct: 976  GNDLLLGIGVDITELTENRNELKKSNELLHAIMDNLPCALFVKDADHEFRYLMYNRVFAE 1035

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
             + +         +  E++        LPE        +             +   L +G
Sbjct: 1036 AFGL---------TGREVIGRCDPELLLPENARLCGESDRAALEAGGVSDFHEEVILADG 1086

Query: 398  QTLHVI----VTSNPRGGTIWM--FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
                +     V ++  G  + +    ++T + +L  +   +   Q   ++   E + +
Sbjct: 1087 HRHALRCIKGVVTHEDGRRLLLGISMDVTKEQELVGELQ-VYGAQQRALNAALESILL 1143



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 120/384 (31%), Gaps = 24/384 (6%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
            + +FD+    +   D  G +L+A    +     E +  ++   E   +  E  ++ + +
Sbjct: 382 MRAIFDASPARLMVVDATGKVLFARTGDQDPFRDELLTLRRIFKEEFTVLWESSQQVLKT 441

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE---- 310
              L  N+      L   + +      V  +      ++D+ +   +  +   T E    
Sbjct: 442 GEPLSVNYPGLGGRLRRADFRKLP-REVFGTEAVLWASLDIEELHRLRLKYQETAEQMRL 500

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            L ++   + + D    +   N+   +L        A     +++   +   ++ P    
Sbjct: 501 TLESIGDGVIVTDAKERVTLLNQVSADLTGFSPQE-AAGKKLEDIFNIVSYVDQSPVSSP 559

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQV 423
            +   +    V  ++ T        +G   H+  ++ P         G + +F ++T + 
Sbjct: 560 LRKALQTREIVTLANHT---DLIAKDGTRRHIADSAAPIIDRNGVLAGAVLVFRDVTAEY 616

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +   + +    V  + +            +   ++ +N AF      +  ++    +  +
Sbjct: 617 ERRDRLHVQKAVLEKALTAGEMTFFRCDENREFLQAANEAFWPRRDGKPQKVEEWIYPGD 676

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +    +       G       +       K     + +  D      I P+   +     
Sbjct: 677 LPELQNCREELFSGKRREFRQLYRLQKAEKFRYYEILMFDD------ISPVSEKKEFFGI 730

Query: 543 VNVTDSVRAERALTEKNEALRKAD 566
           +      R ER L  +N +    D
Sbjct: 731 IRDVTGFR-ERELGYRNTSALLHD 753



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 92/280 (32%), Gaps = 36/280 (12%)

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN----WKTWKENIF------- 379
           +NR    +++   A L    +  ++L F R+ ++ P +       + +KE          
Sbjct: 378 YNRRMRAIFDASPARLMVVDATGKVL-FARTGDQDPFRDELLTLRRIFKEEFTVLWESSQ 436

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVK 434
            V K+ E     +    G+         PR        +W   ++     L  KY    +
Sbjct: 437 QVLKTGEPLSVNYPGLGGRLRRADFRKLPREVFGTEAVLWASLDIEELHRLRLKYQETAE 496

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
               T++ + +GV V     R+ L N     L        + G  + +I    S      
Sbjct: 497 QMRLTLESIGDGVIVTDAKERVTLLNQVSADLTGFSPQE-AAGKKLEDIFNIVSYVDQSP 555

Query: 495 DGWDLFAAIITSF-------------DDERKSLQGTLELLSDS--VLEYSIIPLPNAQTM 539
               L  A+ T               D  R+ +  +   + D   VL  +++   +    
Sbjct: 556 VSSPLRKALQTREIVTLANHTDLIAKDGTRRHIADSAAPIIDRNGVLAGAVLVFRDVTAE 615

Query: 540 LTFVNVTDSVRA--ERALTEKNEALRKADEIKNSFVQHVS 577
               +     +A  E+ALT       + DE +  F+Q  +
Sbjct: 616 YERRDRLHVQKAVLEKALTAGEMTFFRCDENR-EFLQAAN 654



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 70/486 (14%), Positives = 159/486 (32%), Gaps = 47/486 (9%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
            L+    + L+  T+ + K+G              I   G ++G+    R ++ +    + 
Sbjct: 564  LQTREIVTLANHTDLIAKDGTRRH--IADSAAPIIDRNGVLAGAVLVFRDVTAEYERRD- 620

Query: 179  AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD-ILWANISYKKNTETEGIVFQKAI 237
                    +L    +V +    + +   +  D+  + +  AN ++    + +    ++ I
Sbjct: 621  --------RLHVQKAVLEKALTAGEMTFFRCDENREFLQAANEAFWPRRDGKPQKVEEWI 672

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-------KIVRVLNSFGEAG 290
                    +  ++ + S    ++     +  L+      Y        I  V       G
Sbjct: 673  YPGDLPELQNCREELFSG---KRREFRQLYRLQKAEKFRYYEILMFDDISPVSEKKEFFG 729

Query: 291  IAIDVS----KEITVNDQLTHTYEILHNLTVAIAI--FDQNRYLQFHNRSFVELWEIDLA 344
            I  DV+    +E+   +     +++L N+   I +   +Q       +R    L      
Sbjct: 730  IIRDVTGFRERELGYRNTSALLHDVLDNIPGYIWVKEIEQGLRHLMVSRKVGLLVGQKEN 789

Query: 345  FLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             L    ++ E L         PE    ++       +  +S  T   T    N   L V+
Sbjct: 790  ELVGK-TDAEFLP--------PESAEQFRRADAAALAEGRSEVTITLTDRFGNAHDLKVV 840

Query: 404  VT--SNPRGGTIWMF--ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIK 457
             T  + P G  + +    ++T ++ +E + +   ++  +  D+L   + +  F  + R  
Sbjct: 841  QTVLARPDGTRLLLGIGVDITRELKMEAQLHEKNRLLEDIFDNLPTPLFIKDFYNEDRYL 900

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             ++        TE  +L   T    +    ++ +   D   +         +E     G 
Sbjct: 901  FASRTCIDALGTEREKLIGRTDFDIMPIEQAKKFQADDAQAMHQGGSQIIIEELPRPGGR 960

Query: 518  LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK--NSFVQH 575
               L    +        N   +   V++T+       L + NE L    +      FV+ 
Sbjct: 961  FIRLQTRKVRLH-RESGNDLLLGIGVDITELTENRNELKKSNELLHAIMDNLPCALFVKD 1019

Query: 576  VSYELR 581
              +E R
Sbjct: 1020 ADHEFR 1025


>gi|17229296|ref|NP_485844.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130894|dbj|BAB73503.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1287

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 130/715 (18%), Positives = 248/715 (34%), Gaps = 98/715 (13%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYKK-- 224
            IL L        +     K L   +   + L D +   +    D     +  N ++ K  
Sbjct: 425  ILDLSERQQAQQKILQLNKDLQRRVVELQTLLDVIPIGIGIAEDPECQHIKINPAFAKQL 484

Query: 225  -----------NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
                           +     K   E R+L   E+  +  ++   E    E     ++G 
Sbjct: 485  QLSTDVNASLSAPPDQRPTTFKVFHEGRELLPAELPMQYSAAHGAEVLDYEVDIVHDNGE 544

Query: 274  N-KSYKIVRVLNSF-----GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFD 323
              K  + V  L        G  G  +D+++    E  + ++     ++L+ +   +   +
Sbjct: 545  IIKLLEYVAPLFDEDGNTRGCIGAFVDITERKQAEELLRNEQKWLEDVLNLMPRPLLFIE 604

Query: 324  QNR-YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
                 + F NR+  EL   +        + +E        +     +  +       +  
Sbjct: 605  PETARVTFANRAADELAGGE---FPRGVAAEEYHTVYHFTDINGNPVPNEQMPGVRVARG 661

Query: 383  KSSETHKDTWHLPNGQTLHVIVT----SNPRGG---TIWMFENLTVQVDLETK----YNT 431
            +  E  +  WH  + + L +++         G     + +F+N+T     E      Y  
Sbjct: 662  ERLEGLELDWHTND-EVLSLLIFADTLPAMHGYPATCVVVFQNITQIKQAEKALSLGYQR 720

Query: 432  LVKVQGETIDHLS--EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            L  +     D LS  E VA+     +                        + +    C  
Sbjct: 721  LKLLFSTANDLLSSQEPVALIDSCFQKLAQQIGLDVYLNYLVEDNPQSMRLASYRGICPE 780

Query: 490  YYNESDGWDLFAAIITSFDDERKSLQ----------GTLELLSDSVLEYSIIPL------ 533
               E +      A+  +   ER S+            T  + S  +  Y   PL      
Sbjct: 781  LAQEIEFLRFGEAVCGTTAQERHSIALENVQQSTDPKTQLIRSVGINAYYSYPLIAQGRL 840

Query: 534  ---------------PNAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADEIKNSFV 573
                            N + M+  V    ++  ER     +L  + E L +A+ +K+ F+
Sbjct: 841  LGTLSFGSRSRANFTDNQKGMMQAVCDQIAIAMERVELINSLQRQTEQLTEANRMKDEFL 900

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
              +S+ELRSPL  I+G+  LL+  +L    ++ ++ +E I  ++     L+ D+LD++ +
Sbjct: 901  AILSHELRSPLNAILGWAQLLQARRLS--EAQTAKGLETIERNAKAQTQLIEDLLDISRM 958

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-----LGSFVADRQRLL 688
              G ++LN  T  L  ++    ++I        I +    +             D +RL 
Sbjct: 959  IRGKLRLNVRTCNLIPIIETAIENINLAAQAKEIDLTFFLENPATENLPFQVSGDSERLQ 1018

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARD----------NGDFIFSVKNNGSSIPEDMCKSV 738
            Q+   +L+NA+ F+  G  V ++  ++          N      V + G  I       V
Sbjct: 1019 QVIWNLLTNAIKFTPSGGKVEVRLTKNPGCEQNELITNNYAQIQVIDTGIGINSSFLPYV 1078

Query: 739  FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
            F+RF            G+GLGL+IV   + LHGG V + S  +E  +T   ++P 
Sbjct: 1079 FDRFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVHVHSPGEEQGSTFTVKLPL 1133



 Score = 37.6 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 102/298 (34%), Gaps = 41/298 (13%)

Query: 296 SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-- 349
            +     + L    E L +L     + I   D    +Q  N +F+ +       L T   
Sbjct: 302 QQRDRAQETLKAYEEKLASLVDANIIGIIFSDIYGGIQQANEAFLMMVGYSQEDLLTGRL 361

Query: 350 ------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                 P     L+          Q+N K       + Y+    H+D   +P    +  +
Sbjct: 362 NWKNITPPEYIYLD---EQGIAEAQVNPK----GACTPYEKEYIHQDGSRIP--VLIGYV 412

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE-------TIDHLSEGVAVF-GPDGR 455
           +    R  ++    +L+ +   + K   L K            +D +  G+ +   P+ +
Sbjct: 413 LLGEKREESVAFILDLSERQQAQQKILQLNKDLQRRVVELQTLLDVIPIGIGIAEDPECQ 472

Query: 456 IKLSNPAF-RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
               NPAF + L  + +   S          T   ++   +       +  S     + L
Sbjct: 473 HIKINPAFAKQLQLSTDVNASLSAPPDQRPTTFKVFHEGRELLPAELPMQYSAAHGAEVL 532

Query: 515 QGTLELLSDS-----VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
              ++++ D+     +LEY + PL +        +  FV++T+  +AE  L  + + L
Sbjct: 533 DYEVDIVHDNGEIIKLLEY-VAPLFDEDGNTRGCIGAFVDITERKQAEELLRNEQKWL 589


>gi|91774051|ref|YP_566743.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713066|gb|ABE52993.1| bvgS precursor-like multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 682

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 186/388 (47%), Gaps = 16/388 (4%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            I++  NL ++  ++ + + + + + +    ++  ++G+ +   +  I  +N  F  +  
Sbjct: 285 VIFIAVNLILRRTIQKRADEINQAEEKYSVLVEESNDGIIIV-QNYLIVFANLKFAEMLG 343

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            E++RL     I+ +   C     +++    +  +I    +  +  +      +   +  
Sbjct: 344 YEKDRL-----IKTLLNNCINNALKNEVITRYEQLIQGRSETEQQYETNFFSHNGENIPV 398

Query: 529 SIIP-----LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            I         N   M    ++T   + E+ L    ++   A+  KN+F+  +S++LR+P
Sbjct: 399 EINSSLIHYRGNRAVMYIMRDITKRKQQEQDLLNSRQSAEVANHSKNTFLASMSHDLRTP 458

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIG++DLL T  +G LN KQ +Y   I  S  +LLN++NDIL+++ ++AG M+L  S
Sbjct: 459 LNAIIGYSDLLLTESVGDLNEKQIKYTNNILISGRLLLNIINDILNISKIEAGKMQLRPS 518

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + ++L EV + + TK+  +   +    +  +    ADR +++ I   ++ NA+  S 
Sbjct: 519 ENDIQEILKEVNELVKTKVQISKNELIFNIENGIEKIYADRIKIISILQNLVDNAIKHSP 578

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
           K   + +     + +    VKN G  I ++M K +F  FV        + RG GLGL+IV
Sbjct: 579 KNEKIFINITTKDKNLQICVKNKGKGITQEMQKEIFTPFVQVEKFISKEYRGTGLGLAIV 638

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++LH G + I S     T+    IP
Sbjct: 639 KHYVHLHNGKIWIESVLGEETSFIFTIP 666


>gi|218887779|ref|YP_002437100.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758733|gb|ACL09632.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 571

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 169/406 (41%), Gaps = 34/406 (8%)

Query: 406 SNPRGGTIWMFENL--TVQVDLETKY----------NTLVKVQGETIDHLSEGVAVFGPD 453
           + P  GT  +FE+     +  LE +            +  +   + +  + + + V    
Sbjct: 9   NAPAQGTGMVFEDAGTAREAALEAEIARLRGERDAARSAERTLRDILTSIPDLLTVHDRA 68

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            ++  SN              + G        +C   Y   +       I   FD  R+ 
Sbjct: 69  EQVVFSN-----WQGDNVRWETQGG--DQHGRSCFGCYFRGEKSCDACQIAEVFDTGRQK 121

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEI 568
           +       S +    ++ P+ NA   +        +VT++ R ER L    EA   AD+ 
Sbjct: 122 IIELYNPDSRTFRSITVFPVRNAAGQVAMVAEYVRDVTETRRMERELRVAKEAAEAADKA 181

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+P+  ++G  DL   +    L+ +Q +Y+E    S+  LL L+NDIL
Sbjct: 182 KSEFLASMSHEIRTPMNGVLGMLDLALDT---PLDEEQREYLEAAQNSAESLLALINDIL 238

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRL 687
           D + ++AG+++L+     L   L+ +      +  E  +    +    +    V D  RL
Sbjct: 239 DFSKIEAGMVELDSQVFRLRKRLSTLHTMFVHRAEEKGLGFAFLVPEGVPDGLVGDPMRL 298

Query: 688 LQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+   +L NA+ F+  G        ++A  ++    FSV ++G  I +   + +F RFV
Sbjct: 299 RQVLVNLLDNALKFTEAGRVSLAVRTVQATPESMLLEFSVTDSGPGILDKHREHIFERFV 358

Query: 744 SNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                   + +G GLGL+I +    L GG + + S+    +T +  
Sbjct: 359 QADGSLSRRHKGTGLGLAICKRLALLMGGDIRVDSAPGQGSTFHFT 404


>gi|317475553|ref|ZP_07934815.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908257|gb|EFV29949.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 912

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/499 (19%), Positives = 206/499 (41%), Gaps = 24/499 (4%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L    ++L N+      + Q + +   N     +  I+   L       +  +   +++ 
Sbjct: 278 LRSHNKLLENMP---VFYVQEQVMFNENGIPESMRYINANILFKELFCSKQKQEQVNSSM 334

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNPRGGTIWMF-ENLTVQ 422
            P Q   + + +    V++   +   T++         VI+        I +F  N T  
Sbjct: 335 FPHQTE-EYFMQFARIVFQERRSIVFTYYFEEQNAFYEVIIRQAAEENLIDIFGVNTTTL 393

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS--NPA-FRSLWKTEE----NRLS 475
              +             +D        +           N + F      ++      + 
Sbjct: 394 HQTQELLRAANNKLALALDIAHIIPWHWDLQKHAITCDANRSPFELATGVKDERGVRIIH 453

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +  NI    +    +     +   +    ++ R  ++   +   + V   +++   N
Sbjct: 454 EADYFNNIHPDDAERIRDDYQALILGRVKALKEEFRTVIKKNGKEYINWVEARAVVEQRN 513

Query: 536 AQTMLTFVN-----VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            Q     +      +TD  R E+ L        ++D +K++F+ ++S+E+R+PL  I+GF
Sbjct: 514 EQGHPISLIGSLLIITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGF 573

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + +L T++     S+   Y+  I  ++ +LL L++D+LD+A ++AG +  NYS++ LN L
Sbjct: 574 SSILATAEEEEEKSE---YINIIENNNQLLLQLISDVLDIAKIEAGSLDFNYSSLDLNVL 630

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +NE++ +   ++   ++ +++I D      + +R RL QI   +L+NA+ F+ KG  +  
Sbjct: 631 MNELESTALMRITSPDVCLEMIPDNDNCWVITERNRLSQIIINLLNNAIKFTQKG-KITF 689

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
                     F V + G  IP +    +F RF+   +  Q  G GLGLSI +S ++  GG
Sbjct: 690 GYKLQKEKIYFYVTDTGCGIPAEKQDKIFERFIKLNNFAQ--GTGLGLSICKSIVDAMGG 747

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S     +T    +P
Sbjct: 748 EIGVDSKVGNGSTFWFTLP 766


>gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 784

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 166/399 (41%), Gaps = 29/399 (7%)

Query: 410 GGTIWMFENLTVQVDLETK---YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G  +++ E    +   E      N   +     +D    G     P+     ++  +R +
Sbjct: 212 GSVLYLLER--NRRKAERDALMLNATRERVQLALDAAEMGAWNIDPETNTLQTDERYRRI 269

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
              E+  ++    ++ I         ++       A ++  D    S++  +     S+ 
Sbjct: 270 HGVEQEEMTFEDSLKRIHPDDRARVRQA-----VRASMSPLDPSPYSVEYRVVHRDGSIR 324

Query: 527 EYSIIPLPNAQTML----------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             S   +  A              T  +VT+  R E  L    +    A++ K+ F+ ++
Sbjct: 325 WVSSKGIARASRRRGKAVLTSFDGTVADVTERKRQEERLQRSEQIALAANQSKSEFLANM 384

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  I+G+ D+L        N      V  I  +   LL+L+NDILDL+ ++AG
Sbjct: 385 SHEIRTPMAAILGYADVLLGHLEDPDN---RNCVMIIKRNGEHLLSLINDILDLSRIEAG 441

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695
            + ++  ++ L  L+ +++  +  +  E N+  +V  +G++  S   D  RL Q+   ++
Sbjct: 442 KLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLI 501

Query: 696 SNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
            NA+ F+ +GS    V      D     FS+ + G  I ++    +F  F         +
Sbjct: 502 GNAIKFTDEGSVRLKVRFMKGADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRK 561

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGL+I +  I +  G +S+ S     +T   R+P
Sbjct: 562 YGGSGLGLAISQRLIEMMDGEMSLESELGEGSTFFVRLP 600


>gi|265762626|ref|ZP_06091194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255234|gb|EEZ26580.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301162192|emb|CBW21737.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 638R]
          Length = 637

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/506 (19%), Positives = 203/506 (40%), Gaps = 24/506 (4%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D      + D       +L    +A   +D           +  +  +  A +      +
Sbjct: 12  DTGDLENLKDNYQKITSVLAGHQIAFWEYDIPTGECNFTDEYFHILGLKEAGIIFR-DIN 70

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFS----VYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           +   F    + +  Q  +    E+       V +      +T  L +    +     N  
Sbjct: 71  DFYRFAHPEDVISYQTTFARMLESETKISQIVVRCVGRQGETIWLEDNFIAYKKNKENGS 130

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              I    N+T + + E +   L +   + I+ L E          I + +  F      
Sbjct: 131 DKIIAYTANITSRCEKEVQIRQLEERNRKIIEALPE---------FIFIFDDNFFITDVL 181

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLSDS-VL 526
                     +  +     R    S+  DLF + I       + K ++  +++ +     
Sbjct: 182 MAPDTELLHPVEVLTGADGRSIYSSEVSDLFISSIHECLKSGKLKEIEYPVDVEAGRHFF 241

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +  I P    + +    ++ D +R  + L E  +   +AD +K+ F+ ++S+E+R+PL  
Sbjct: 242 QARIAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNA 301

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     
Sbjct: 302 IVGFSEIIA---LTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTE 358

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++ L++EV +    KM +  +++ VI   +      DR R+ Q+    LSNA+  + +GS
Sbjct: 359 MSGLVDEVDKVHRLKM-KKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS 417

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            +     ++       V + G  I ++    +F RF       Q  G GLGL I +S + 
Sbjct: 418 -ITFGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVE 474

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
             GG + + S     +T    +P+++
Sbjct: 475 RLGGRIEVESELGQGSTFILYLPNRQ 500


>gi|304407987|ref|ZP_07389637.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343006|gb|EFM08850.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 608

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 159/392 (40%), Gaps = 47/392 (11%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           ++QV +E +           +D++  G+ +    G I L +     +       L     
Sbjct: 238 SLQVQME-RIRQNESQLESVLDNMINGIIMIDRSGHIVLLSRRAEEILGISAREL----- 291

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIP-LPNA 536
                    R+Y E+      + +I    +++  +   +      + +LE +I+P L + 
Sbjct: 292 -------VGRHYTEARQQHELSQLIAEAFEKQTYIHEEMTFYYPEERLLELNIVPMLQDK 344

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              +  + V   V A R L          + +++ FV +VS+EL++P+  + GF + L  
Sbjct: 345 DDFVGVLLVLQDVSAIRRL----------ERMRSEFVANVSHELKTPVAAVKGFAETLLG 394

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             +         +++ I   S  L  L+ DIL+L+ +++  + L  S + ++    +  Q
Sbjct: 395 GAVND-EETARSFLQIIYDESERLNRLIGDILELSKIESRRVPLMLSPVEMDSFAAKTVQ 453

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---- 712
            +  + +   I +++ +D ++    AD  RL QI   +LSN ++++ +G  V +      
Sbjct: 454 LMEAEANRKRITLELKADDEI-YVEADEDRLRQIMMNLLSNGINYTPEGGKVTVTVEPVW 512

Query: 713 -------------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
                          D      ++K+ G  IP+     +F RF            G GLG
Sbjct: 513 PASTGRSLLTDEERDDYDRIRITIKDTGIGIPKKDLPRIFERFYRVDKARSRSSGGTGLG 572

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSIV+  + +H G +++ S     T     +P
Sbjct: 573 LSIVKHLVEMHNGSIAVESEVGVGTKFIIELP 604



 Score = 46.1 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 61/190 (32%), Gaps = 24/190 (12%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS---KEITVNDQLTHT 308
           M           + +  +++      K    +   G A  A+  S   +   +    +  
Sbjct: 194 MTRPLEQITKVAKRIQRMDYRARVDVKKSDEIGDLGYAINAMADSLQVQMERIRQNESQL 253

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             +L N+   I + D++ ++   +R   E+  I    L                    E 
Sbjct: 254 ESVLDNMINGIIMIDRSGHIVLLSRRAEEILGISARELVGRH--------------YTEA 299

Query: 369 LNWKTWKENIFSVYKS-SETHKD-TWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTV 421
                  + I   ++  +  H++ T++ P  + L + +    +      G + + ++++ 
Sbjct: 300 RQQHELSQLIAEAFEKQTYIHEEMTFYYPEERLLELNIVPMLQDKDDFVGVLLVLQDVSA 359

Query: 422 QVDLETKYNT 431
              LE   + 
Sbjct: 360 IRRLERMRSE 369


>gi|301299923|ref|ZP_07206154.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852468|gb|EFK80121.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 627

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 165/396 (41%), Gaps = 36/396 (9%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+++V+   + +   + +    + H+S+GV      G I + N    +   
Sbjct: 245 GQLAQAVNNLSIRVEETQELSESERRRLDSVLSHMSDGVIATDRRGGITIVNDMAMNYLD 304

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E  +  G  I +I    ++Y            ++   D+    + G  +L+ ++   +
Sbjct: 305 ISEGEVL-GKSILDILDIRNQY--------TLRDLLEKQDEVVLDISGEKDLILNAY--F 353

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 354 SVIQRESGFISGIVCVLHDVTEQQ-----------KIDRERKQFVSNVSHELRTPLTSMR 402

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             ++++     +  ++ ++ND+L L+ +D+G +KL+   + +N
Sbjct: 403 SYIEALNDGAWRD-EKVAPEFLKVTQDETDRMIRMINDLLSLSRMDSGTVKLDLELVNIN 461

Query: 649 DLLNEVKQSIATKMHE----------NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+N +       + +           N  IK     +      D  + +Q+   I++NA
Sbjct: 462 GLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRNFTKRDLWVELDTDKFIQVVDNIMNNA 521

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           + +S  G  +  +    + + I S+ + G  IP+     VF+RF  V  A    + G GL
Sbjct: 522 IKYSPDGGVITCRLLETHNNVILSISDQGLGIPKKDLGHVFDRFFRVDKARSRAQGGTGL 581

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I +  I LH G + + S +   +T    +P +E
Sbjct: 582 GLAISKEVIELHHGRIWVDSVEGKGSTFYISLPYEE 617


>gi|29347071|ref|NP_810574.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338969|gb|AAO76768.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 601

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/515 (20%), Positives = 214/515 (41%), Gaps = 40/515 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S    + +     + I  NL V I +++++ YL       ++L + +L           
Sbjct: 105 ASAYQALQNSERILHNIYKNLPVGIELYNKDGYL-------LDLNKKELEMFHITHKEKV 157

Query: 355 LLEFLRSANKLPEQLNWKTW-KENIFSVYKSSETHKDTWHLPNGQTLHVIVTS------- 406
           +   +     LPE++  K    E +   ++   +    ++     +  + +T+       
Sbjct: 158 IGINIFENPALPEEIKLKIRDNEEVEFTFQYDFSKIKGYYESEKTSGFINLTTRITTLYD 217

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKV---QGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           + R    ++  N+  + +    YN + +         D+   G A F       LS   +
Sbjct: 218 HDRQPINYLLINV-DKTENTIAYNKIQEFKNFFELVGDYAKVGYAHFDA-----LSRNGY 271

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESD--GWDLFAAIITS------FDDERKSLQ 515
                 +      GT +  I    S ++ E      D  A ++         D   +   
Sbjct: 272 ALSSWYKNVGEEEGTPLPEIIGIHSHFHPEDRAVMLDFLAKVVKGESTKLCRDVRIRRAD 331

Query: 516 GTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           G+      +VL  +  P  N  + +    ++T     E+ L +  E   +AD +K++F+ 
Sbjct: 332 GSYTWTRVNVLVRNYRPQDNVIEMLCINFDITQLKETEQMLIKAKEKAEEADRLKSAFLA 391

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I+GF+ +L+         ++ QY+  I  ++ +LL L++DILDL+ ++
Sbjct: 392 NMSHEIRTPLNAIVGFSSMLEE---AEDQEEKHQYITIIEDNNKLLLQLISDILDLSKIE 448

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG   +    +    L N++ Q++  K     + +++  +    +F +D+ RL Q+    
Sbjct: 449 AGTFDIIPERVNAKQLCNDLFQAMQMKTSP-QVELRLKDNLPELTFTSDKNRLYQVLLNF 507

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           ++NA+ F+S+G  + +    D  +  FSV++ G  I  +  +++F RFV         G 
Sbjct: 508 VTNALKFTSEG-NITIDYQIDGNEVKFSVQDTGMGIEPEKQEAIFTRFVKLNSF--IPGT 564

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL I +S +   GG + + S            P
Sbjct: 565 GLGLPICQSIVTQLGGKIGVESEPGRGACFWFTHP 599


>gi|150019623|ref|YP_001311877.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906088|gb|ABR36921.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 979

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 16/371 (4%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           +++           +D +++ ++    +G I        S   T   +L    H+ +I  
Sbjct: 463 QSELRKKEVDFRSLVDSINDIISEIDINGYIT----KLWSSVHTYLYKLHMHGHLNSIYD 518

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPN--AQTML 540
                  +     +    I      RKS      + S       E  I P  N   + ++
Sbjct: 519 IL-----DESTAKIAKEKIHYVIKSRKSTTMDFNIQSKDGLKWFEACISPHLNYKDRVVV 573

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T+  +  R++    E   KA + K+ F+  +S+ELR+PL  I+GF+ +L+     
Sbjct: 574 LTRDITEQKKMARSIITAKEEAEKASKAKSEFLSSMSHELRTPLNAILGFSQILELDPES 633

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN  QSQ V+ IS + + LL L+N+ILDLA +++G + ++  ++ +  ++ E    I  
Sbjct: 634 PLNPSQSQSVKEISKAGSHLLELINEILDLAKIESGKLSISIESVPIKHVIEEAISIIKP 693

Query: 661 KMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              ++ I+ I    D       AD  RL QI   +LSNA+ ++ K   VI    + N  +
Sbjct: 694 FADKHKIKIINYPIDNSDEFVSADHTRLKQILLNLLSNAIKYNKKDGQVIFYHDKVNDKY 753

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            F V + G  +     + +F  F           G G+GL++ +    L  G + ++S  
Sbjct: 754 RFHVIDTGIGLSNSDLELIFKPFYRLNRINNSIEGTGIGLAVAKQLTELMNGEIFVTSEK 813

Query: 779 EGVTTINCRIP 789
              +     +P
Sbjct: 814 GAGSHFWIELP 824


>gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB]
 gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 853

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/553 (18%), Positives = 199/553 (35%), Gaps = 57/553 (10%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           ++ R L +  +   A           +      +   +   + + D N      N  F  
Sbjct: 157 RLTRALAADRDDARAELAVALAQSERERAFLDSLYDAIPDLVWVKDMNGAYLSCNPMFSR 216

Query: 338 LWEIDLAFLATNPSND----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSS-----ETH 388
            +      +      D    EL +F R  ++   +    T  E   +   S      ET 
Sbjct: 217 FFNASEYDIVGRTDYDFIDKELADFFREKDRAAAEAGGPTINEEWLTFGDSGYRGLFETI 276

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE---------- 438
           K       G  +          G + +   +T +  +E    T                 
Sbjct: 277 KTPMRDKEGYLI----------GILGISREITERRRVEDALRTSEAELDRHRQHLEALVA 326

Query: 439 ------------------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                              +D +  G+      G     N    ++     + +     +
Sbjct: 327 ERTHALAQANVQLEQTIFAMDRVGIGIHWVDTQGYFIYVNRVAAAMLGYSVDEM-MRLSV 385

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            +I    +     +    +  A   S D + +   G +  +S ++          A+ + 
Sbjct: 386 PDIHPDFTIEGFGAATEKIRQAGRVSLDAQHRHRDGHMVPVSINIYYRPETAQEPARYIT 445

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++++  RAE+ L E  E   +A + K++F+ ++S+E+R+P+  I+G T L++    G
Sbjct: 446 FVSDISERKRAEQELREAKELAEQATKAKSAFLANMSHEIRTPMNAILGSTYLMRR---G 502

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             ++  ++ +E I AS   LL++++DILDL+ ++AG + L  + ++L  LL EV + +  
Sbjct: 503 LTDAALNEPLERIEASGKHLLSIIDDILDLSKIEAGKLVLEEAPLMLPQLLGEVAEMLRG 562

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
           +  E N+ ++V S G   + + D  RL Q      +NA+ F+  G+  +     +  D  
Sbjct: 563 RAQEKNLAVRVESAGWPLNVLGDATRLRQALINYANNAIKFTDHGAITLRSRVIEENDES 622

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 V++ G  I  +    +F  F        R   G GLGL+I      L GG    
Sbjct: 623 ILVRLEVEDTGIGISPEALGRLFTPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAAGA 682

Query: 775 SSSDEGVTTINCR 787
            SS    +     
Sbjct: 683 ESSLGKGSLFWIT 695



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 101/369 (27%), Gaps = 74/369 (20%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRI----------------------LSLDGIYS 176
            +  L  + Q    +   G  SG     +I                       +L     
Sbjct: 108 HALRLPIDGQRTILLLAPGEPSGGLPLTQIFQPVLANLAKAIILCCNNDRLTRALAADRD 167

Query: 177 E-LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +  AE  +   +     +    L+D++  LVW +D  G  L  N  + +           
Sbjct: 168 DARAELAVALAQSERERAFLDSLYDAIPDLVWVKDMNGAYLSCNPMFSRFFNASEYDIVG 227

Query: 236 AIG------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--- 286
                    E    F+E+ +    +           ++  + G    ++ ++        
Sbjct: 228 RTDYDFIDKELADFFREKDRAAAEAGGPTINEEW--LTFGDSGYRGLFETIKTPMRDKEG 285

Query: 287 ---GEAGIAIDVSKEITVNDQL----------THTYEIL--------------------- 312
              G  GI+ ++++   V D L              E L                     
Sbjct: 286 YLIGILGISREITERRRVEDALRTSEAELDRHRQHLEALVAERTHALAQANVQLEQTIFA 345

Query: 313 -HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
              + + I   D   Y  + NR    +    +  +      D   +F         +   
Sbjct: 346 MDRVGIGIHWVDTQGYFIYVNRVAAAMLGYSVDEMMRLSVPDIHPDFTIEGFGAATEKIR 405

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYN 430
           +  + ++ + ++    H+D   +P    ++    +         F  +++ +   E +  
Sbjct: 406 QAGRVSLDAQHR----HRDGHMVPVSINIYYRPETAQEPARYITFVSDISERKRAEQELR 461

Query: 431 TLVKVQGET 439
              ++  + 
Sbjct: 462 EAKELAEQA 470


>gi|220930752|ref|YP_002507661.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
 gi|220001080|gb|ACL77681.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
          Length = 607

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 167/393 (42%), Gaps = 28/393 (7%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKL 458
            + V S    G +   F  +  ++       +  K + ETI +++++GV  F   G    
Sbjct: 236 QLAVKSEDEIGNLTKTFNYMAAELKKTLSEISSQKNKVETILNYMADGVMAFDLKGMAIH 295

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +NPA R L               +  +   + +    G D+    I  F  E   ++ + 
Sbjct: 296 ANPAARKLLG------------NDAVSHPFKEFAVKVGLDVRIEDIVYF--EESPVRESD 341

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +++D  ++       +       + V      E+          K + ++  FV +VS+
Sbjct: 342 TIINDMYVKVYFAVFTDTNKKPEGIIVVLHDATEQQ---------KLESMRREFVANVSH 392

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+T+I  +T+ L    +   +   ++++  I + +  +  LV D+L L+ +D   M
Sbjct: 393 ELRTPITSIKSYTETLLDGAVED-HETSNRFLSVIDSEADRMTRLVKDLLQLSRLDNQQM 451

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                 + L+ ++  + + +  +    N +++    G +    AD+ RL Q+   ++SN+
Sbjct: 452 NWKIEKVSLDAMVKTIVERLKIESQRKNQKLESYVIGDIPVINADKDRLEQVVVNLISNS 511

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + ++++   + +   +   D    V ++G  IP +    VF RF        R   G GL
Sbjct: 512 IKYTAEYGEITVYVGKIYNDVYMKVTDSGIGIPGESLPRVFERFYRVDKARSRDMGGTGL 571

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI +  +  HGG ++ISS     T +  +IP
Sbjct: 572 GLSIAKEIVQAHGGTINISSEVGKGTEVVVKIP 604


>gi|94499808|ref|ZP_01306344.1| putative sensor protein [Oceanobacter sp. RED65]
 gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65]
          Length = 938

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 165/378 (43%), Gaps = 27/378 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG---PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           K   L  +  E ID    GV +     PD  +  +N  F  L    E+ +        I 
Sbjct: 284 KQQDLNVLLSEAIDASPVGVTIADINKPDEPLIYANRFFYKLTGYSESEV--------IG 335

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTMLT 541
             C      +   +    I  + +  RK +   L    D      +  + P+        
Sbjct: 336 KNCRFLQGRNTNREARLIIRDAINTRRKIVLELLNYKKDGTEFWEKLFLSPIFKDGECRA 395

Query: 542 FVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +V +   +  E      + +  E   +A + K+ F+ ++S+E+R+P+  ++G   L++ S
Sbjct: 396 YVGIQQDISYEIQNKTKMIQAKEQAERATQAKSEFLANMSHEIRTPMNGVLGMLKLVRKS 455

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K   LN  Q   +     S+  LL ++NDILD + ++AG + L      L + ++++ +S
Sbjct: 456 K--GLNRDQLHQINLAHTSAESLLVVINDILDFSKIEAGKINLETIDFNLLEWISDISES 513

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARD 715
           +A   H+ +I + + ISD    + + D  R+ Q+ S ++ NA+ F++ G   + L    +
Sbjct: 514 LAFHAHKKDIDLSLDISDVTYFNLIGDPNRVRQVISNLVGNAIKFTNDGWVKIKLSTKPE 573

Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
             + I    S+K+ G  I ED    +F+ F    +   R   G GLGL+I +    + GG
Sbjct: 574 KSNLIKLSCSIKDTGIGIAEDRLDKLFSAFEQADNSTTRQYGGTGLGLAIAKKLCEIMGG 633

Query: 771 HVSISSSDEGVTTINCRI 788
            V++SS+    +  +  I
Sbjct: 634 DVTVSSTPGVGSQFSFHI 651


>gi|309790612|ref|ZP_07685166.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227340|gb|EFO81014.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 973

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 15/374 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
               L  +     +     +D  ++ + +     R+ + N   R  +   E  L     +
Sbjct: 356 ENARLFAQTRNDQERTSAVVDATNDAILMLDERRRVMIINRRARFFFGISERELQE-KDL 414

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             ++   +R + +   +  +   +     ER   +  +      +L+    P+       
Sbjct: 415 EQLSIIFNRIFEDPPRFHGWLRQLLRSPTERVVAEFRIIRPEARLLQCFSAPV------- 467

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL---KTS 597
             +++ D       +       R+ + +K+ FV +VS+ELR+PLT+I G   L+   K S
Sbjct: 468 --MDLHDRYLGRILVFRDITREREVERMKSEFVSNVSHELRTPLTSIQGTLQLVLGPKRS 525

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L  +    +    +++  L+ L+NDILD+A ++ G ++L   T+ + DL       
Sbjct: 526 GSEGLPQRARDLLNVSLSNTERLIRLINDILDVAKIEQGRIELRRETLSVEDLCRAAVAE 585

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +    +   + I +     L S +ADR R  QI   +LSNA+ FS    +V+L A  D  
Sbjct: 586 MHAFANHRGMSIDMDLQPGLPSVLADRDRSTQILINLLSNAIKFSVGSQSVLLSARTDGS 645

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              FSV++ G  I  +  + +F +FV       R   G GLGLSI ++ +   GG + + 
Sbjct: 646 MVYFSVRDWGRGIDLENQERIFQKFVQIDSSATRDVGGTGLGLSISKALVEEQGGRIWLE 705

Query: 776 SSDEGVTTINCRIP 789
           S     +T    +P
Sbjct: 706 SELGRGSTFTFTLP 719



 Score = 41.5 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 8/134 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
               +    T  ++     AI + D+ R +   NR     + I    L     + E L  
Sbjct: 362 AQTRNDQERTSAVVDATNDAILMLDERRRVMIINRRARFFFGISERELQEK--DLEQLSI 419

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----GGTI 413
           + +     +   +  W   +          +     P  + L               G I
Sbjct: 420 IFN-RIFEDPPRFHGWLRQLLRSPTERVVAEFRIIRPEARLLQCFSAPVMDLHDRYLGRI 478

Query: 414 WMFENLTVQVDLET 427
            +F ++T + ++E 
Sbjct: 479 LVFRDITREREVER 492


>gi|332701527|ref|ZP_08421615.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551676|gb|EGJ48720.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 945

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 124/655 (18%), Positives = 253/655 (38%), Gaps = 69/655 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW-HRDQAGDILWANISYKKNTETEGI 231
            + +E+AE     ++L     +++ LF+S+   ++  R   G IL AN       ET   
Sbjct: 166 DLEAEIAERRRSEERLRESEELYRGLFESVSEAIFLVRQSDGQILMAN-------ETAST 218

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH--GNNKSYKIVRVLNSFGEA 289
           +++ +  E  +L   ++     ++     +F   +    H   +   + +    ++    
Sbjct: 219 MYRYSREELLRLKNMDVSAEPQATKQATHHFMSYIPVRYHCKKDGLVFPVEITASNIVFQ 278

Query: 290 G-----IAI-DVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           G     IAI D+S+    E  + +       ++ +LT  +  F +   + F N +     
Sbjct: 279 GETAHIIAIRDISERMHSEKKLQEGEERYRAVVEDLTEFVTRFTRAGVITFVNEAVCRFH 338

Query: 340 EIDLAFLATNPSND----ELLEFLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +     +      D     + + LR   A+  PEQ           +   +S + +  W 
Sbjct: 339 DTPAENVLGKNLFDLLPSSVSDELRRQLASATPEQP------LVFLTHPINSPSGEKRWQ 392

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
               + L          G I  ++    ++T Q   +       +      D+  + +  
Sbjct: 393 EWTNRALF------DESGKIIEYQGVGRDITEQRYAQEALARREQEFRNLADNAPDPIVR 446

Query: 450 FGPDGRIKLSNPAFR-SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           +  D     +N A   +L       +  G     I+A   + Y ++      +     F 
Sbjct: 447 YNRDVVRTYANAALSLALDVPYSELIGQGLSGTPISAEARQDYEQAVREVFDSGEEKIFV 506

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALR 563
            +    +G+L       ++Y + P  +        +    ++TD +R E+ L +  E   
Sbjct: 507 LQLNPKKGSLH------IQYRLTPEYSEDGQVESVLAIGRDITDLLRLEQELRQAKETAE 560

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A   K++F+ ++S+E+R+PL +I    +LL       ++ + + YV     S++ LL L
Sbjct: 561 SASRAKSTFLSNMSHEIRTPLNSIQSVIELL---PSLDISEEAASYVRIAEQSASHLLRL 617

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVA 682
           +N++LDL+ +++G  +L         LL  + + +A       + + V ++D      + 
Sbjct: 618 INNLLDLSRIESGKTELARKPFEPRHLLQAILRPLAVTAGTKGLDLAVAVADDVPVRLMG 677

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------DFIFSVKNNGSSIPEDM 734
           D  RL QI   ++ NA+ ++  G  + +   RD            +FSVK+ G  I +D 
Sbjct: 678 DELRLGQILMNLVGNAIKYTDTG-RISISVKRDAACGREDGRIRLLFSVKDTGIGIHQDR 736

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           C+ +F  F  V +  R      GLGL I    +   GG + + S     +T    
Sbjct: 737 CEHIFEGFRHVLDLDRPSSESAGLGLQISTQLVEQMGGRIWVESELGQGSTFCFT 791



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 58/442 (13%), Positives = 127/442 (28%), Gaps = 84/442 (19%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-------GIVFQKAIGESRKLFK-- 245
           FK + +S    +      G   + + + ++ T          G   ++ +  S  L +  
Sbjct: 6   FKRIVESAPDTIIVFGPDGRYEYVSPAIREATGGLLTPEYLVGKHPREIVHNSNDLLRMM 65

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS-----FGEAGIAIDVSKEIT 300
           E  + R   +   +  F +  + +  G      ++R   +          I  DVS+   
Sbjct: 66  ESAQTRAKETGRDQVLFFDFETPI--GTRHFQAVIRPERTCQGQVESFLSIVRDVSEIRR 123

Query: 301 VN--------------DQLTHTYEILHNL------TVAIAIFDQNRYLQ----------F 330
           +               + L  +   L  L       V     D    +            
Sbjct: 124 LQEELAAAKAKAEEQAEALKRSNRALERLYQEVEKRVGERTVDLEAEIAERRRSEERLRE 183

Query: 331 HNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-------- 381
               +  L+E +  A      S+ ++L    +A+ +     ++  +E +  +        
Sbjct: 184 SEELYRGLFESVSEAIFLVRQSDGQILMANETASTM-----YRYSREELLRLKNMDVSAE 238

Query: 382 --YKSSETHKDTWHLP-------NGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLET 427
                  TH    ++P       +G    V +T++          I    +++ ++  E 
Sbjct: 239 PQATKQATHHFMSYIPVRYHCKKDGLVFPVEITASNIVFQGETAHIIAIRDISERMHSEK 298

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           K     +     ++ L+E V  F   G I   N A      T    +        + ++ 
Sbjct: 299 KLQEGEERYRAVVEDLTEFVTRFTRAGVITFVNEAVCRFHDTPAENVLGKNLFDLLPSSV 358

Query: 488 SRYYNE-------SDGWDLFAAIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNAQ 537
           S                      I S   E++  + T   L   S  ++EY  +     +
Sbjct: 359 SDELRRQLASATPEQPLVFLTHPINSPSGEKRWQEWTNRALFDESGKIIEYQGVGRDITE 418

Query: 538 TMLTFVNVTDSVRAERALTEKN 559
                  +    +  R L +  
Sbjct: 419 QRYAQEALARREQEFRNLADNA 440


>gi|288941103|ref|YP_003443343.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896475|gb|ADC62311.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1370

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/537 (18%), Positives = 198/537 (36%), Gaps = 57/537 (10%)

Query: 296 SKEITVNDQLTHTYEILHNL----TVAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATN- 349
           ++ +   +QL    E+L  L      ++A+ D+  RYL    +   ++  ++   +    
Sbjct: 337 TERLNALEQLRENEELLQILIDCTPASLAMLDREMRYLIVSRQWLQDIGMLEHNLIGQRY 396

Query: 350 ----PSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
               P+  E  +   +     E + ++    E      +        W + + Q      
Sbjct: 397 DSVCPNLPEHWKAAHARGLAGEVVKFEAEHVECADGRLRWKRLEVHPWRMADDQV----- 451

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIK 457
                GG   + E++T   + E       +   +        I  + + V +    G   
Sbjct: 452 -----GGITLLTEDVTELKETELALRASQQRLQDNRELLRTLIRSIPDLVWLKDTQGVYL 506

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQG 516
             N  F  L+   E+++   T    +  T + ++  +D   + A    S ++E   +  G
Sbjct: 507 TCNARFERLYGASESQIIGKTDYDFVPRTLADFFRTNDLAAIAAGGPRSNEEELTFAGDG 566

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK------------ 564
             EL+                 +    ++T   RAE  L      L +            
Sbjct: 567 HRELVQVIKAPVYDTRGTLIGVLGIGRDITQLKRAEAELALHRRHLEELVAERTAELTAA 626

Query: 565 ------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                     K+ F+ ++S+E+R+P+  ++G   LL+      L     +    I  +  
Sbjct: 627 RAEAERLARAKSEFLANMSHEIRTPMNAVLGLAYLLERM---DLPDAAHELTRKIHLAGR 683

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL- 677
            LL ++NDILD + +++G +++  +   L+++L+ +   +     +  + + +     L 
Sbjct: 684 NLLGILNDILDFSKIESGHIEIERAPFQLDEVLDGLATIMTVTAGDKPLELVIRPPDCLD 743

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPED 733
            + + D  RL Q+   + SNA+ F++ GS  +    L+         FSV++ G  I E 
Sbjct: 744 CTLLGDALRLSQVLINLTSNAVKFTASGSVEVGVDLLERTASEIRVRFSVRDTGIGIDEA 803

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F        RR  G GLGL I    + L GG + + S     +T    +
Sbjct: 804 TQSRLFQPFAQADASTTRRFGGSGLGLVISRRLVELMGGRLELDSRPGEGSTFRFEL 860



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 109/327 (33%), Gaps = 27/327 (8%)

Query: 15  EICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLA--KKVNETYSFLSEICDQLSKY 72
           EI    + +I +   +  ++  ++I    ++RQR+ LA      E  +      +QL + 
Sbjct: 290 EIWASVALEIVLIALVGVLMSISVISGARVLRQRHQLALVAATQEAQTERLNALEQLREN 349

Query: 73  HSLL----TENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLS 128
             LL            + D +     +  Q  Q I + + +     +++          +
Sbjct: 350 EELLQILIDCTPASLAMLDREMRYLIVSRQWLQDIGMLEHNLIGQRYDSVCPNLPEHWKA 409

Query: 129 KATEKLRKEGQSFD-LVAETQNDCA----IKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
                L  E   F+    E  +       +++            I  L    +EL ET L
Sbjct: 410 AHARGLAGEVVKFEAEHVECADGRLRWKRLEVHPWRMADDQVGGITLLTEDVTELKETEL 469

Query: 184 KCK----KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQ 234
             +    +L ++  + + L  S+  LVW +D  G  L  N  +++          G    
Sbjct: 470 ALRASQQRLQDNRELLRTLIRSIPDLVWLKDTQGVYLTCNARFERLYGASESQIIGKTDY 529

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFGE 288
             +  +   F        I++     N  E ++    G+ +  ++++           G 
Sbjct: 530 DFVPRTLADFFRTNDLAAIAAGGPRSNEEE-LTFAGDGHRELVQVIKAPVYDTRGTLIGV 588

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNL 315
            GI  D+++      +L      L  L
Sbjct: 589 LGIGRDITQLKRAEAELALHRRHLEEL 615


>gi|281358214|ref|ZP_06244697.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281315304|gb|EFA99334.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 1131

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 122/630 (19%), Positives = 239/630 (37%), Gaps = 53/630 (8%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISS 255
            L +++   +   D  G +L  N + +  T            E    LF  +    + S 
Sbjct: 374 ALLNAITDGIIETDADGVVLDMNPAAEAVTGISLKEAAGMSVEMLLPLFSSKDHAPLPSL 433

Query: 256 SALEKNFCETVSTLEHGNNKS-----YKIV---------RVLNSFGEAGIAIDVSKEITV 301
            A   +    VS  EH   +      + +          +  ++     +  D + E   
Sbjct: 434 VAEALHSDRLVSAGEHAELRRRDGGRFHVSLSAVRLCRKKTDSTCSVLLVLRDTTAEYRQ 493

Query: 302 NDQLTHTYEILH------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +L     +L        L+  I   D    ++     +  +W  +       P   E 
Sbjct: 494 KRELAMRNGMLELAARISGLSCFICRSDGTG-IELA--RYQPIWPKE----DGRPVPPEK 546

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW- 414
             F   A +L      + W+E   +  K       + +    +   + V  +    +   
Sbjct: 547 FMFAEDAEEL-----RRAWQELRSNRRKEVSLSFRSNYYGETRYYSMRVVPSKDFYSTGH 601

Query: 415 -----MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD--GRIKLSNPAFRSLW 467
                + ++ T     E KY     +    +D+L  G+ V  PD  GR  L N  F S+ 
Sbjct: 602 RRYFGILQDFTHVRMNEQKYQNTWSLLQLILDNLPCGIFVKNPDDGGRYVLCNRMFGSIV 661

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +   ++  T      A        +D  ++     +    E  +    +   S ++  
Sbjct: 662 GVDSRAIAGKTDWELFKAAGEAARFSADDREVIETGASIDKTELYTGADGVVRTSRTIKS 721

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             I    +   +   +++   V  ER L+   E  R A + K++F+  +S+E+R+PL  +
Sbjct: 722 RLIQQDGSRLLVGLSIDIFRQVEVERKLSRALEQARLAAQAKSTFLATMSHEIRTPLNAV 781

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG +DLL++ ++   ++++  + E I+ S   LL L+ND+LDL+ ++A  M+L    + L
Sbjct: 782 IGLSDLLRSPRIS--DAQRVAFSEAINTSGKALLQLINDVLDLSKIEAMKMELRPGPVSL 839

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL+EV Q  A    +  +  + +         + D  R+ Q+   ++ NA+ F+++G 
Sbjct: 840 TQLLSEVHQIFAQSAADKGLEFEFVPPEPEPPKLLLDEVRVRQVLLNLIGNAVKFTTRG- 898

Query: 707 TVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGL 758
            V L+         + + + +V ++G  I  +    +F  F    +   R    G GLGL
Sbjct: 899 FVKLECALGFNRTPDCEVLITVADSGVGIDPEFMAHLFEPFRQAVNADSRSFEGGSGLGL 958

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I +  I    G + + SS    TT   R+
Sbjct: 959 AISKRLIEQMNGTLDVESSLGVGTTFTVRL 988



 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 96/292 (32%), Gaps = 31/292 (10%)

Query: 37  TIIPIILLIRQRNSLAKKVNET--YSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE 94
           +   ++L++R   +  ++  E    + + E+  ++S     +  ++          E   
Sbjct: 476 STCSVLLVLRDTTAEYRQKRELAMRNGMLELAARISGLSCFICRSDG------TGIELAR 529

Query: 95  IIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ-----SFDLVAETQN 149
                 +    P            +      +L +A ++LR   +     SF      + 
Sbjct: 530 YQPIWPKEDGRPVPPEKF------MFAEDAEELRRAWQELRSNRRKEVSLSFRSNYYGET 583

Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
                +    S            GI  +     +  +K  N  S+ +++ D+L   ++ +
Sbjct: 584 -RYYSMRVVPSKDFYSTGHRRYFGILQDFTHVRMNEQKYQNTWSLLQLILDNLPCGIFVK 642

Query: 210 DQA--GDILWANISYKKNTETEGIVFQ--------KAIGESRKLFKEEIKKRMISSSALE 259
           +    G  +  N  +      +             KA GE+ +   ++ +     +S  +
Sbjct: 643 NPDDGGRYVLCNRMFGSIVGVDSRAIAGKTDWELFKAAGEAARFSADDREVIETGASIDK 702

Query: 260 KNFCETVSTLEHGNNKS-YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
                    +   +     ++++   S    G++ID+ +++ V  +L+   E
Sbjct: 703 TELYTGADGVVRTSRTIKSRLIQQDGSRLLVGLSIDIFRQVEVERKLSRALE 754


>gi|150003606|ref|YP_001298350.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149932030|gb|ABR38728.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 807

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 208/510 (40%), Gaps = 30/510 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     +  +   I  NL   I ++D++ ++        +L + ++         D +  
Sbjct: 305 ESEARLEKAYLQNIYKNLPAGIELYDKDGFMT-------DLNDKEMEIFGLRHKEDVIGL 357

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQ-TLHVIVTSNP------- 408
            L     LP+ L  K        + +       D ++  +   T+ +I    P       
Sbjct: 358 NLFDNPLLPQGLKDKLKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLYDALGN 417

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRS 465
               + +  + T   +  +K     +      ++   G A F     DG     N  +R+
Sbjct: 418 LINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDG--YAVNSWYRN 475

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSD 523
           + + E   L+    + +      R         +     +    + + L   GT      
Sbjct: 476 VGEKEGTPLNEIIKVHSHFHPDDRRMMLRFFDQVLIREASHLRRDVRILCEDGTYTWTRV 535

Query: 524 SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +V+     P       +    ++T+    ER L    +   + D +K++F+ ++S+E+R+
Sbjct: 536 NVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRT 595

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL  ++       + QY+  +  ++ +LL L++DILDL+ +++G  +   
Sbjct: 596 PLNAIVGFSSLLTETEDMK---DRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVK 652

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S   +N L +E+ +S+  K+    + +            AD+ RL Q+ S  ++NA+ F+
Sbjct: 653 SDTDVNLLCSEIIRSLRMKVPA-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFT 711

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             GS  +    + +G   F V++ G  IP++  K+VF+RFV         G GLGLSI +
Sbjct: 712 FSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH--GTGLGLSICK 769

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           S +   GG + + S +   +      P +E
Sbjct: 770 SLVEQMGGTIGVESEEGEGSCFWFTYPYQE 799


>gi|218260509|ref|ZP_03475779.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224494|gb|EEC97144.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
          Length = 519

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/516 (20%), Positives = 212/516 (41%), Gaps = 48/516 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           ++E  + D       IL NL   + + D   +   +  N+            +  +   +
Sbjct: 31  AREAKIIDSQQFCLNILDNLPFPVFVKDINDDFRYKLWNKEAERKSGTTREEILGHSDFE 90

Query: 354 ELL-EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RG 410
               E  R   ++ EQL             K     +D +  P+G   + IV  +    G
Sbjct: 91  IYGKERGRKYRQIDEQLVKN----------KVEYQAEDDYVTPDGTIHNTIVNKSVITLG 140

Query: 411 GTIWMF---ENLTVQVDLE-------TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
              W+     ++T   + E        +    +K Q   ++ ++ G+     +  +    
Sbjct: 141 NNHWLLVVRWDITQIKEYEKKLIQAKEELENAIKNQNLVLNSINFGLVFVDKNYVV---- 196

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             + S     E           +                 +  I      R  L     +
Sbjct: 197 -QWESTANLHEIAKGRHYSAGKVCYQTVMGRGAPCSQCALSEAIERGKPVRHEL-----I 250

Query: 521 LSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             D+V+E S IP+          ++   +++D  R ER L  + +   +A+ +K++F+ +
Sbjct: 251 EKDTVIEISAIPVYTNTGEIQGGLMKIEDISDKKRIER-LQYEVKKADEANRLKSAFLAN 309

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  IIGF++LL      +   ++ ++V  I++++ +LL L+NDI+D+A +++
Sbjct: 310 MSHEIRTPLNAIIGFSNLLVE---ANDPEEKKEFVHIITSNNELLLQLINDIIDMAKIES 366

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATK-MHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           G +   YS   +N L+ ++ Q +  K    ++++I+ +          D  R++QI    
Sbjct: 367 GTLDFTYSDTDINQLMEDLCQQMKMKNTRPDSVKIEFVQRQSECIINTDSNRIMQIMINF 426

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           ++NAM F+ +GS +     +   D  F V++ G  IP D  + +F+RFV      Q  G 
Sbjct: 427 MTNAMKFTEQGS-ITFGYKKSEKDIYFFVRDTGIGIPSDKKEQIFDRFVKLNTFAQ--GT 483

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL I    ++  GG + + S      T   R+P 
Sbjct: 484 GLGLPICAMIVDKFGGTIGVDSQQGEGATFWFRLPL 519


>gi|308068363|ref|YP_003869968.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857642|gb|ADM69430.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 600

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 152/373 (40%), Gaps = 32/373 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                   +    + +++ G+ +      I L N     +      R++           
Sbjct: 246 KTIRDNEDLLQSVMSNMTGGILMIDASECIALVNRESERMLGVVGKRVT----------- 294

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTMLTFVN 544
             + Y+E         +I      R+ L G + L +  + ++    +P+   +     + 
Sbjct: 295 -DKPYHELKKHYELTKLIEGSIQRRERLHGEVHLYNPEERIVLLDGVPMYEDEGGYRGML 353

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                     L +   A+R+ + +++ FV +VS+EL++P+  + GF + L    +     
Sbjct: 354 F---------LLQDITAIRRLENMRSEFVANVSHELKTPIAAVKGFAETLLGGGVKD-EE 403

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
               +++ I   S  L  L+ DIL+L+ +++    L+ S + ++  +  + + +     +
Sbjct: 404 TARSFLQIIYDESERLNRLIGDILELSKIESKRSTLDCSPVHVSSFIESLLEKLNNVAAK 463

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDF 719
             I + +    +L    AD  +L QIF  +LSN ++++  G  V +K        D    
Sbjct: 464 KRITLHMDIPDEL-FMEADEDKLQQIFLNLLSNGINYTLDGGKVKIKVLTIQRENDTEKV 522

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F+V + G  IP+     +F RF            G GLGLSIV+  ++LH G +S+ S 
Sbjct: 523 VFTVSDTGIGIPKKDLPRIFERFYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESE 582

Query: 778 DEGVTTINCRIPS 790
               TT    +P 
Sbjct: 583 LGLGTTFTVELPL 595


>gi|170764179|ref|ZP_02633654.2| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170661001|gb|EDT13684.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
          Length = 821

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 166/381 (43%), Gaps = 9/381 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    ++T +  +E       +      +++ + +     +G+I   N A   +    E 
Sbjct: 412 VLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEE 471

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L    +   +    +    +S  ++    +       +K L   LE +S  + +     
Sbjct: 472 ELIGKNYYDLLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQ-LESISSRIKDNK--- 527

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N    +      + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     
Sbjct: 528 -NNTLGWVRVARNIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQ 586

Query: 593 LLKTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           LL TSK    N  +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L
Sbjct: 587 LLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKL 646

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             ++  S+   +   NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +
Sbjct: 647 TEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEV 706

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
               D       VK+ G  IP  M + +F RF+ N       + G G+GLS+V+S + LH
Sbjct: 707 SIFADETWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELH 766

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G V +  S+E  +  +  +P
Sbjct: 767 EGKVFLRESNESGSEFSILLP 787


>gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
 gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
          Length = 1491

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/384 (24%), Positives = 166/384 (43%), Gaps = 17/384 (4%)

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK--LSNPAFRSLWKTEENRLSPGTH 479
            +   E +  T        ++ + + +   G DGR+     NP  R     E         
Sbjct: 825  RRLAEEQLRTSEHRSRVLLNAIPDMMFRLGLDGRLLDYFGNPEQRLYVPPEIFLGRMLNE 884

Query: 480  I---RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            I      A   +       G   F  ++   D E  S +  L L  D     +I+    A
Sbjct: 885  ILPPDVTAQWNNAILAAPQGLQTFEYVLL-IDGEPVSFEARLVLNEDEHEVVAIVRDITA 943

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIG 589
            +  +    + +     R + E+ E L +A++        K+ F+ ++S+ELR+PL  I+ 
Sbjct: 944  RKQMERDLLHERQSLARRVAERTEDLSRANQELARAVRAKDDFLANMSHELRTPLNAILA 1003

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             ++ +     G LN +Q   +  I +S   LL L+NDILDL+ ++AG M L    I+++D
Sbjct: 1004 LSEGMLEQLRGPLNERQIAALRNIESSGRHLLALINDILDLSKIEAGRMDLQIDQILVSD 1063

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
            +       I  +  +   +I +I +     F AD++RL Q+   +L+NA+ F+  G  + 
Sbjct: 1064 VCAASMIFIKEQASKKQQKINLIQEESGLRFYADQRRLKQMLVNLLTNAVKFTPVGGQID 1123

Query: 709  -ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
             I+KA    G    +V + G  I ++  + +F  F+        Q  G GLGL++V    
Sbjct: 1124 LIVKADASQGVLAITVADTGIGISDEEMQRLFKPFIQLDSGLTRQHEGTGLGLALVRRLA 1183

Query: 766  NLHGGHVSISSSDEGVTTINCRIP 789
             LHGG VS+ S+    +     +P
Sbjct: 1184 ELHGGSVSLESTPGVGSRFTILLP 1207



 Score = 38.0 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 11/172 (6%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL--WANISYKKNTETEGIVFQKAI 237
           +  L  ++L       +VL +++  +++     G +L  + N   +     E I   + +
Sbjct: 824 QRRLAEEQLRTSEHRSRVLLNAIPDMMFRLGLDGRLLDYFGNPEQRLYVPPE-IFLGRML 882

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI--DV 295
            E         +      +A +         L  G   S++   VLN      +AI  D+
Sbjct: 883 NEILPP-DVTAQWNNAILAAPQGLQTFEYVLLIDGEPVSFEARLVLNEDEHEVVAIVRDI 941

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           +    +   L H  + L        + ++   L   N+           FLA
Sbjct: 942 TARKQMERDLLHERQSLAR-----RVAERTEDLSRANQELARAVRAKDDFLA 988


>gi|148658529|ref|YP_001278734.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148570639|gb|ABQ92784.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 2153

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/378 (25%), Positives = 167/378 (44%), Gaps = 15/378 (3%)

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            T + DL  +           +  L EGV V     +I L N A   +       +     
Sbjct: 1769 TERSDLLLQQREENSKNQAILQSLGEGVIVVDGGRKIVLYNAASEQILGIPATFV----- 1823

Query: 480  IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            +       + Y+N S   +    I        ++L  T +   + VLE   +P P    M
Sbjct: 1824 VDQPLTRIAEYHNGSTVVERAKRIYEGLQQGLQALTETPK-NHNRVLE---LPEPTQSIM 1879

Query: 540  LTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            L F        A      +        +AD  K  F+  VS+ELR+PLT+I G+ DL+  
Sbjct: 1880 LNFAPWVGPRNAIYGSVIVLHDITREVEADRAKRDFISSVSHELRTPLTSIKGYVDLMLL 1939

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               G LN +Q + +  +  ++  L++L+NDIL++  +D+  ++L +  +V+ D+  +V+Q
Sbjct: 1940 GANGPLNEEQKKSLGVVKNNANRLMDLINDILEIGRIDSDKIQLTFEKVVIGDIFRDVEQ 1999

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            ++  ++    +              AD++RL QI   + SNA+ ++     V L+A  + 
Sbjct: 2000 TLRAEIKRKRLSFTFDVAADTPPVFADKRRLTQIVLNLASNAVKYTYPEGIVKLRAGLNP 2059

Query: 717  -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
             G     V +NG  I  +  + +F RF    +  R +  G GLGLSI +SF+ LHGG + 
Sbjct: 2060 AGLLQVDVIDNGVGISPEQQQHLFRRFYRADNPLRDEAGGTGLGLSIAKSFVELHGGQMW 2119

Query: 774  ISSSDEGVTTINCRIPSK 791
            + S     +T +  IP +
Sbjct: 2120 VESDLGKGSTFSFIIPLR 2137



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 109/323 (33%), Gaps = 51/323 (15%)

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF-- 199
             L  +T  + A+++  R  G+                   ++  K L +   + + +   
Sbjct: 1614 SLDLQTTLNRALELASRAVGAR----------------RGSIMLKDLKSGTLICRAVLNT 1657

Query: 200  ----DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
                ++  F +   D+ G   W      K     G V Q       +   E+++  + + 
Sbjct: 1658 DGSVEAKHFPISFGDKKGLSDWVMR--HKKAACIGDVLQDNRWLQEEGRAEDVRSVIAAP 1715

Query: 256  SALEKNFCETVSTLEHGNNKSY-------------KIVRVLNSFGEAGIAIDVSKEI--- 299
               +++    V  +       +             ++   +N+     I  +++ E    
Sbjct: 1716 LMAQED-PIGVLIVTSAETNFFKQDQMQLLTTIANEVAIFINNATLYTIINEIATERSDL 1774

Query: 300  --TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
                 ++ +    IL +L   + + D  R +  +N +  ++  I   F+   P    + E
Sbjct: 1775 LLQQREENSKNQAILQSLGEGVIVVDGGRKIVLYNAASEQILGIPATFVVDQP-LTRIAE 1833

Query: 358  FLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV------IVTSNPRG 410
            +   +  +   +  ++  ++ + ++ ++ + H     LP      +      +   N   
Sbjct: 1834 YHNGSTVVERAKRIYEGLQQGLQALTETPKNHNRVLELPEPTQSIMLNFAPWVGPRNAIY 1893

Query: 411  GTIWMFENLTVQVDLETKYNTLV 433
            G++ +  ++T +V+ +      +
Sbjct: 1894 GSVIVLHDITREVEADRAKRDFI 1916


>gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1323

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 145/876 (16%), Positives = 301/876 (34%), Gaps = 112/876 (12%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYS 60
           ++A +  + IG G ++       +     IA  +L +++   +  R R    ++  E  S
Sbjct: 81  LLAPLHELRIGAGQDL-------VQWGILIANGVLISLLSAAMH-RSRARETQRWQELSS 132

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLK 120
             S +    +++ +   +      +     +   +  +L   +     +   ++F+    
Sbjct: 133 IQSRLQQSETRFQATFEQAAVGIALVSPDGKWLRVNRRLCDMLGYQADELMGMTFQQITH 192

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG-SCAFLRILSLDGIYSELA 179
                       ++  +    +    T     ++  G V   +     +  L G      
Sbjct: 193 PDDLFIDQTYVAQMLAD----ERQHYTLEKRYLRKGGEVLWITLTVALVKDLKGKPDYFI 248

Query: 180 ETTLKCKKLSNHISVFK---VLFDSLDFLV----WHRDQAGDILWANISYKKNTETEGIV 232
                 ++        +    +      L     W  +   D  + +    +    +  +
Sbjct: 249 SVIEDHQQRKETEEALRRNEGILRESQHLAKIGNWRWNITDDSHFWSPEIYRIYGRDPSL 308

Query: 233 FQKAIGESRKLFKE---EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNS 285
                 E RK F +       + +     +    E  + + H   +   I+     +  +
Sbjct: 309 PPAIYPEVRKYFTQDGWRAIAQSVERCLQDGLPYECDAEVIHEQGEPIWIIARGAALRAN 368

Query: 286 FGEA----GIAIDVSKEITVNDQLTHTYEI------------LHNLTVAI---------- 319
            G      G   D+++      QL H  ++            L+ +  AI          
Sbjct: 369 DGTIVELYGTVQDITERKLAEQQLLHNQQLALDTQRRARLAALNLMDDAISARIRAETTS 428

Query: 320 -AIFDQNRYLQFHNR-SFVELWEIDL--AFLATNPSNDELLEFLRSANKLPEQLNWKT-- 373
            A+ +  + L      + V +WE ++    L  +P    L  + RSA +L E   W +  
Sbjct: 429 SALRESEQRLLMAQEGAHVGIWEWNMQGGRLFFSPECARL--YGRSAEQLSEFKQWHSCL 486

Query: 374 -------WKENIFSVYKSSETHKDTWH--LPNGQTLHVI--------VTSNPRGGTIWMF 416
                    + +  +  S +  +  +   LPNG    +             P    + + 
Sbjct: 487 HPDDKPRLDKLLAELPASGKPIEIEFRILLPNGDVRWLSSKGSIYRDAQQRPL-RLLGIH 545

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T +   E +   L       ++   +GV +     RI+  N AF +    +++ +  
Sbjct: 546 LDITERKQAEQQLRQL----SLALEQSPDGVFITDTQARIEYVNVAFLAASGYQQSEVIG 601

Query: 477 GTH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            T   +R+     + Y    D           F + RK       L + S +      + 
Sbjct: 602 QTPSLLRSGLTPKATYIALWDAIKRGQRWHGEFINRRKDGSHYQVLATVSPIRQENGAVT 661

Query: 535 N--------------AQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSY 578
           +               + +  +    + +  ER   L + ++    A+  K++F+ ++S+
Sbjct: 662 HYVTVQADITEKKQLGEELDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSH 721

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  I+G T LLK     + +  Q   +E I  ++  LL ++NDILDL+ +DAG M
Sbjct: 722 EIRTPMNAILGLTYLLKR---DTPDHTQQDRLEKIDNAAQHLLTIINDILDLSKIDAGKM 778

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L  S   L  +L+ V   ++ +     + I V           D  RL Q      +NA
Sbjct: 779 ALEQSDFSLTAMLDNVSALMSEQARAKGLTIIVDIGDTPAWVHGDITRLRQALLNYAANA 838

Query: 699 MDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           + F+ +GS V L+   D+         F V++ G  I  +  + +F  F        R  
Sbjct: 839 IKFTEQGS-VTLRVRVDHPLAGGYLLRFEVEDTGIGISPEQSEKLFQAFEQADVSTTRKY 897

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            G GLGL+I      L GG V ++S+    +     
Sbjct: 898 GGTGLGLAITSRLATLMGGEVGVTSTLGKGSCFWFT 933


>gi|254560907|ref|YP_003068002.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
 gi|254268185|emb|CAX24095.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
          Length = 1125

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/704 (15%), Positives = 226/704 (32%), Gaps = 74/704 (10%)

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
             LR   +        + D       R       LR +    I ++  E   +       
Sbjct: 143 AALRDLAEIVTAQMRLRRDNLAFASERA------LRQIHESTIRAQGVEIERRASA---- 192

Query: 192 ISVFKVLFDSL-DFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
            +    + + +     W  +  +G  +++  S  +    +            +L     +
Sbjct: 193 -NSLLTMAEQIAQVGHWRLNFASGQPIYS-ESLLRIAGLDAAAPTTRHPGLAQLCHPADR 250

Query: 250 KRMISSSAL---EKNFCETVSTLEHGNNKSYKIV--------RVLNSFGEAGIAIDVSKE 298
            R+ +  A         E  +     +     ++            + G  GI +DV+  
Sbjct: 251 GRVEAIIAAAIAGGQDFEVETRFVRPDKTIRDVMVRGTCKTDEAGRTIGLFGILMDVTDR 310

Query: 299 ITVNDQLTHTYEILHNLTVAIAIF----DQN-RYLQFHNRSFVELWEIDLAFLATNPSND 353
           + +  ++  +     +L  A+ +     D +     + N  F + +          P   
Sbjct: 311 VQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRFEDYYG---------PIGA 361

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFS-------VYKSSETHKDTWHLPNGQTLHVIVTS 406
             ++ L   +          W+    S           +      WH  +   +      
Sbjct: 362 ARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQARDGSYRWHKLSITPIRNAGDP 421

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID---------HLSEGVAVFGPDGRIK 457
                 I    ++   V          ++ G  ++         +L  G+ V  P+    
Sbjct: 422 AGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTFDWNLRTGITVLSPESVRL 481

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              P             +   H  ++    +R ++  D    F A          +   T
Sbjct: 482 YGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSRFIAEYRVGQRWLYTSGRT 541

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L            + L   +       +  +    RA T + E        K+ F+  +S
Sbjct: 542 LYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAATVEAERA---SAAKSEFLAAMS 598

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+G+ DLL   +      ++   +E I  S   LL +VND+LD++ ++AG 
Sbjct: 599 HEIRTPLNGILGYADLLLDRRDHDPEDQRR--LELIRVSGESLLTVVNDVLDVSKIEAGQ 656

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
           ++L+     L  L+ +    +     ++ + ++   D  L  S V D  RL Q+   +L+
Sbjct: 657 LELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPVSVVGDANRLRQVLFNLLN 716

Query: 697 NAMDFSSKGSTVILKAARDN----------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           NA+ F+  GS V L A  +               F + + G  I       +F  F    
Sbjct: 717 NAVKFTPAGSVV-LTARYEGSVPGADGGTAEALRFEISDTGIGIAPSQRHRLFKPFSQVD 775

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               RR  G GLGL+I    + + GG + + S +   +T    +
Sbjct: 776 GSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFTL 819


>gi|32477912|ref|NP_870906.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448469|emb|CAD77984.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1122

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 121/683 (17%), Positives = 253/683 (37%), Gaps = 88/683 (12%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +++ +      +L     + + + ++    +   D  G +++ N +    T  +    + 
Sbjct: 275 TDIRDRHRAEVELRKSERLVRTIAENSTQGLVMMDATGHVIYCNQALLDMTGFDSEEIRS 334

Query: 236 A-IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH------GNNKSYKIVRVLNSFGE 288
           A + +       + +   +S   +++   E  S   H       +  S+ +V   +   E
Sbjct: 335 APLHDLIHHHYPDGRPYPMSECPIDRALPEDFSVRAHEDLFFRKDGSSFSVVCAASPIFE 394

Query: 289 AGIAI-------DVSKEITVNDQLTHTYEILH-NLT-VAIAIFD---QNRYLQFHNRSFV 336
            G  +       D + +     +L      L  +L    IA +      + L        
Sbjct: 395 DGKPVSTVIEVRDTTVQKAHEVELKRAAARLDKSLAFAGIAAWGWDHSEQRLILDVP-LR 453

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            +W  D      + + D+      +    P   +             SS   + T  LP+
Sbjct: 454 RMWGFDDE---QDVTLDDF-----AQRITPNHRDRVVASITNAMKTFSSYREEYTIDLPS 505

Query: 397 G--QTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           G  + +  I      G G I  F  +T+ V  + +     +V+ E ++ LSE   +  P+
Sbjct: 506 GNQRWIRAIGQVVADGNGGIADFFGVTMDVTADLRRQVKARVRSELLEQLSE---LTDPE 562

Query: 454 GRIKLSNPAFRSLWKTEENRL---------------SPGTHIRNIAATC--SRYYNESDG 496
             ++L+    R  +      L               S   H+  I  T     + N+ + 
Sbjct: 563 AIMQLATQRIRKHFSASRCYLAYIRLDAQTTEVFHESHDEHLSPIVGTHQIRDFLNDHEM 622

Query: 497 WDLFAAIITSFDD----------------------------ERKSLQGTLELLSDSVLEY 528
            ++ +      DD                              K L  TL +  D    +
Sbjct: 623 REIESGKPVRIDDISQSGRSSEKVQQFADLGIAAVTQGSFEATKVLHRTLFITKDKPYRW 682

Query: 529 SIIPLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
               +     +   V    +   ++  L +       A + K++FV ++S+E+R+P+T I
Sbjct: 683 RDDEVRFLDNLTEMVYLRIERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTPMTAI 742

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+ DL++       + +  +++E I  +   LL ++NDILDL+ ++AG +++N+     
Sbjct: 743 LGYADLVRDMI---EDPQAIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNHEKFEP 799

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             L+ +V+  +  +  E  + + V   G L  +  +D +RL QI   ++ NA+ F+ KG 
Sbjct: 800 ARLIEDVRSIMEVRAKEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKFTQKG- 858

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
            V ++  R N      + + G  + ++  K +F  F            G GLGL+I +  
Sbjct: 859 WVQIRV-RFNKLLHIDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGLAISKRL 917

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
             + GG +  SS++   +T    
Sbjct: 918 TEMLGGTIIASSTEGVGSTFTVS 940



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/359 (10%), Positives = 105/359 (29%), Gaps = 55/359 (15%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGESRKLFKEEIKK 250
             F++L ++   +VW  D  G  +  + S++  T    + +   + +       +  +  
Sbjct: 20  EAFRLLAEASSRIVWIADCDGKFIEDSPSWRAFTGQTIDQLASTRWLDTVHPEDQRSVAD 79

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI--------AID-------- 294
            +  S        E       G     ++  V     E  I        AID        
Sbjct: 80  ALKDSRRDGGVSVEFRLRRHDGAFIGVQVQGVPQRQPEGSIDCWVLMSSAIDDPGTHQSK 139

Query: 295 ------------VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
                        +++    ++  H   ++++    + + D++  L   +   +E+ ++ 
Sbjct: 140 QASLSESAGQPKTARQSEAAEREAHLRRVINHQLGLVGVIDRDGILVEVDDRSLEIAKVA 199

Query: 343 LAFLATNP--------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              +             +  +   +R A         + +   +     S   + +    
Sbjct: 200 RQDVIGKHFAEAPWWTYDPRVAARVREAM-------QRAFAGEVVRFDVSLFAYGEEGVR 252

Query: 395 PNGQTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            +     VI   N  G   ++     ++  +   E +     ++     ++ ++G+ +  
Sbjct: 253 IDFMIAPVI---NDEGEVEFLIPSGTDIRDRHRAEVELRKSERLVRTIAENSTQGLVMMD 309

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             G +   N A   +   +   +        +      +Y +   + +    I     E
Sbjct: 310 ATGHVIYCNQALLDMTGFDSEEIRSAP----LHDLIHHHYPDGRPYPMSECPIDRALPE 364



 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%)

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           RK+G SF +V        I  +G+   +   + +       +   E      +L   +  
Sbjct: 377 RKDGSSFSVVCAAS---PIFEDGKPVST--VIEVRDTTVQKAHEVELKRAAARLDKSL-A 430

Query: 195 FKVLF----DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFKEEIK 249
           F  +     D  +  +   D     +W    +    +     F + I  + R      I 
Sbjct: 431 FAGIAAWGWDHSEQRL-ILDVPLRRMWG---FDDEQDVTLDDFAQRITPNHRDRVVASIT 486

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA------IDVSKEITVND 303
             M + S+  + +   +     GN +  + +  + + G  GIA      +DV+ ++    
Sbjct: 487 NAMKTFSSYREEYTIDLP---SGNQRWIRAIGQVVADGNGGIADFFGVTMDVTADLRRQV 543

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +     E+L  L+    + D    +Q   +   + +     +LA    + +  E    ++
Sbjct: 544 KARVRSELLEQLSE---LTDPEAIMQLATQRIRKHFSASRCYLAYIRLDAQTTEVFHESH 600


>gi|114776707|ref|ZP_01451750.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus
           ferrooxydans PV-1]
 gi|114552793|gb|EAU55224.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus
           ferrooxydans PV-1]
          Length = 701

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/511 (19%), Positives = 203/511 (39%), Gaps = 28/511 (5%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE--- 357
           + + L +   I ++   +    D N  +Q  N     +   + A +  N +  +L +   
Sbjct: 25  LREALQNA--IFNSANFSSIATDANGVIQIFNVGAERMLGYEAADVMNNITPADLSDPQE 82

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL----PNGQ----TLHVIVTSNPR 409
            +  A  L  +L+          V+K++   +D + L     +G      + V    +P+
Sbjct: 83  LIARAEALSAELDTPITPGFEALVFKATRGIEDIYELTYIRKDGSRFPAVVSVTALRDPQ 142

Query: 410 G---GTIWMFENLTVQVDLE-------TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
               G + +  + T +  +E        +           I+   + +    P G I   
Sbjct: 143 NNIIGYLLIGTDNTARKQVEADQAKLDQRLRDQQFYTRSLIESNIDAIIATDPSGIISDV 202

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N    +L     + L  G  ++N      R         L    +T ++   ++  G   
Sbjct: 203 NKQMEALTGCTRDEL-IGAPMKNFFTDPQR-AEAGIKRVLNEKKVTDYELTARAWDGKET 260

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           ++S +   +               +VTD    +  L +      KA   K+ F+  +S+E
Sbjct: 261 VVSYNATTFYDRDRKLQGVFAAARDVTDRKHLDVELEDAKSVAEKASLAKSDFLSSMSHE 320

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LRSPL  I+GF  L+++      +S Q + +  I  +   LL L+N+ILDL+ V++G + 
Sbjct: 321 LRSPLNAILGFGQLMESESPPPTDS-QKESIAQILQAGWHLLTLINEILDLSKVESGKVP 379

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L+   ++L++++ E +  +  +  E  IR+            ADR R+ QI   +L+NA+
Sbjct: 380 LSREPVLLSEVMLECQSMVEPQAQERGIRMTFPQSDTPYFIHADRTRVKQIMINLLTNAI 439

Query: 700 DFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLG 757
            ++S    + ++      G    S+K++G+ +  +  + +F  F       G   G G+G
Sbjct: 440 KYNSAKGEIEVEYTESAPGRLRISIKDSGAGLTPEQLEQLFEPFNRLGQENGSEEGTGVG 499

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L + +  + L GG +   SS    +     +
Sbjct: 500 LVVSKRLVELMGGTIGAESSLGAGSVFWFEL 530


>gi|300362619|ref|ZP_07058795.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
 gi|300353610|gb|EFJ69482.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
          Length = 616

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 168/421 (39%), Gaps = 38/421 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKY-NTLVKVQGETID 441
            E  K    + NG  + HV V +    G +   F  L+V+++   +  ++  +     + 
Sbjct: 208 EEMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEISDSERRRLDNVLT 267

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE--SDGWDL 499
           H+++GV      G I + N          E  +  G  I N+         +  S   +L
Sbjct: 268 HMTDGVIATDRHGNITIINETALDFLGKTEKDV-IGKPITNLLGLKDVTIQDLLSTQQEL 326

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +  +  DE                 +S+I             + D  + +       
Sbjct: 327 VVRVNDNTRDEMILHA-----------NFSLIQRVTGFVSGLVCVLHDITQQQ------- 368

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K +  +  FV +VS+ELR+PLT++  + + L        N    Q++  I   +  
Sbjct: 369 ----KNEREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNI-APQFLHVIQDETER 423

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-------ATKMHENNIRIKVI 672
           ++ ++ND+L L+ +D G+ +++   + LND +N V           + KMH+    IK  
Sbjct: 424 MIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKRE 483

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D  +++Q+   I++NA+ +S  G  + ++  +     I S+ + G  IP 
Sbjct: 484 FPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLGIPR 543

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F+RF         ++ G GLGL+I +  +  H G +   S++   +T    +P 
Sbjct: 544 KDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISLPY 603

Query: 791 K 791
           +
Sbjct: 604 E 604


>gi|1401270|gb|AAB08575.1| RcaE [Fremyella diplosiphon Fd33]
          Length = 655

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 170/404 (42%), Gaps = 30/404 (7%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G+   V+           + E + V++  E       +      + L   +A      + 
Sbjct: 269 GRLEEVVAARTAE-----LQEEINVRMQAEAALRQSEEQLRLITNALPVLIAYVDEQQQY 323

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           + +N A++        ++  G+H+R +       + E     +   + T+   +  + + 
Sbjct: 324 RFNNQAYQDWLGQSPQKI-YGSHLRQV-------WGEDCYQRMEVYVKTALSGQAVNYEN 375

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            + L   S     +  +P+                  AL+      +  + +K+ F+  +
Sbjct: 376 DIVLRDGSWRAVDVTYIPHLDDENMVKGFF-------ALSSDISDRKAIERMKDEFISII 428

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++     +L T +LG+L+++  Q +     S+  L+ LVN++LDL  +++G
Sbjct: 429 SHELRTPLTSLHSALKILATGRLGTLSTEGQQMLGIADDSTERLVRLVNNVLDLQRIESG 488

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            + +        +L+  ++ + A +       + ++   +  S  AD   +LQ  + +LS
Sbjct: 489 KVIMECQACNAANLM--IQAAEAMQAMAQQQEVTLVKQPQDISVWADADYILQALTNLLS 546

Query: 697 NAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
           NA+ FSS G TV L   ++        + +F V++ G  IP D  + +F RF        
Sbjct: 547 NAIKFSSPGGTVWLTVEQEKNSSNNPKEVVFRVRDEGQGIPADQLERIFERFQQVDSSDS 606

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            ++ G GLGL+I    I  H G +   S+    +T    +P+ E
Sbjct: 607 RKKGGTGLGLTICRKIIEQHNGRIWAESTPGCGSTFAFTLPTLE 650


>gi|39995118|ref|NP_951069.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39981880|gb|AAR33342.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 762

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 183/447 (40%), Gaps = 27/447 (6%)

Query: 355 LLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           + E      ++ E +L  +    +   + + +E         + +   +   ++      
Sbjct: 331 VRELADGVRRIEEGELQQRVAVTSSDEIGELAEAFNRMAAAIDERDRTIRTKAHDLENLN 390

Query: 414 WMFENLTV--QVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               ++    +  +E +   L          +  ++EG+AV   DGR+ L NPA + L++
Sbjct: 391 LKLTDMNEFLERRVEERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFE 450

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLE 527
              +R+  G  I +I        N+ +   L   I +  ++  ++    ++L      L+
Sbjct: 451 MVPHRVV-GQPILDI-------CNQGEFCRLVEHITSMGENRDQATVREVDLDARGKKLK 502

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            ++ PL +       V ++                 + D +K  F+  VS+EL++PLT+I
Sbjct: 503 VTLAPLVDGDGHFAGVVMSVRDVTAEE---------EVDRMKTEFISTVSHELKTPLTSI 553

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G   L+     G  + +  + +     ++  L+ LVNDILD+A +++G M+   S    
Sbjct: 554 KGSLQLIVDKSRGFTDVE-KELLGVCLRNTERLIRLVNDILDIAKIESGKMEFALSPHSP 612

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +L+    + +     E+ + +       L +   D  RL Q+ + +++NA+ FS +G+ 
Sbjct: 613 AELVEWSVRELEGFAREHGVTVVNEVSADLPAIYGDGDRLGQVLTNLIANAVKFSPRGAV 672

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           V + A + +     SVK+ G  I       +F RF       R Q  G GLGL+I +  +
Sbjct: 673 VTISAEQSDNFVAVSVKDRGREIQWADRGKLFKRFQQIDSGDRRQHGGTGLGLAICKEIV 732

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
             H G +  S    G       +P  E
Sbjct: 733 ERHHGRIFYSEGIGGGNVFTFTVPIHE 759



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 24/142 (16%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-- 353
            +   +  ++     IL ++   IA+ D++  +   N +  +L+E+    +   P  D  
Sbjct: 406 ERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFEMVPHRVVGQPILDIC 465

Query: 354 ---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              E    +     + E  +  T +E                    G+ L V +     G
Sbjct: 466 NQGEFCRLVEHITSMGENRDQATVREVDLD--------------ARGKKLKVTLAPLVDG 511

Query: 411 -----GTIWMFENLTVQVDLET 427
                G +    ++T + +++ 
Sbjct: 512 DGHFAGVVMSVRDVTAEEEVDR 533



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 47/145 (32%), Gaps = 13/145 (8%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
               +   L   +   + +  S+   +   D+ G ++  N + ++  E   +V  + +G+
Sbjct: 403 RVEERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFE---MVPHRVVGQ 459

Query: 240 S-RKLFKEEIKKRMISSSALEKNFCETVSTLE---HGNNKSYKIVRVLNSFGEAGIA--- 292
               +  +    R++          +  +  E       K  K+       G+   A   
Sbjct: 460 PILDICNQGEFCRLVEHITSMGENRDQATVREVDLDARGKKLKVTLAPLVDGDGHFAGVV 519

Query: 293 ---IDVSKEITVNDQLTHTYEILHN 314
               DV+ E  V+   T     + +
Sbjct: 520 MSVRDVTAEEEVDRMKTEFISTVSH 544


>gi|296187919|ref|ZP_06856311.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296047045|gb|EFG86487.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 691

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/504 (18%), Positives = 200/504 (39%), Gaps = 30/504 (5%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE--FL 359
              L H  ++++N++  I +FD N  L   N++  ++  + +  L    +  E  +  ++
Sbjct: 169 KQHLMHLKDVINNISEGIMVFDTNEKLSLCNKAVFKILNLKVIQLVDESAFSEKYKAIYI 228

Query: 360 RSANKLPEQ--LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGT 412
               +  E+   ++   K+ + ++    E  + T+ +   + L + ++      +    T
Sbjct: 229 NDEGQTTEKTIYDYIKVKKTMRNMIFKIED-RVTFEI---KYLELNISPILNKKDEIIYT 284

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEE 471
           I   +++T     +           + ++ +   +AV    G   +L N  +  +     
Sbjct: 285 IMTIKDVTESRLHQINAEEQAAFIKDVVNTVDVPIAVVDYPGISYRLMNKKYEQILGYNN 344

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-----SVL 526
             +         A  C +   +    +L+  I+ S  ++ K        + D        
Sbjct: 345 YIM-----FDEKALDCEKGSYKYVKGNLY-KILNSVGEKNKPYAINPYKIEDDKGEERFY 398

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +    P  N  +          +  E      N  L K  ++K+ F   +S+ELR+PLT 
Sbjct: 399 KIKFTPYKNKNSNTRIHIYGSDITEE---VNHNIELEKITKLKDEFFTIISHELRTPLTI 455

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I     L        +     + +  I+ + + LL L+N+ILD++  +AG + +N +   
Sbjct: 456 ICSSLQLAYDVYDKEITPNMDKTLSRINQNCSRLLKLINNILDISKAEAGFLSVNNTNFE 515

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
              +   +  S  +      I +   ++ +  +   D+ +  +I   +LSNA+ F+ +G 
Sbjct: 516 AVYVSEVIINSSNSYAVSKGIELIFDTNQEEINVRLDKDKYEKILLNLLSNAIKFTPEGK 575

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
            +I+    +   F  SVK+ G  IP D   S+F+RF        RR  G G+GL++V+  
Sbjct: 576 KIIVTLKSEEEYFYLSVKDFGIGIPGDKINSIFDRFSQLNSSLTRRAEGTGIGLALVKKI 635

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I L  G + + S     T    ++
Sbjct: 636 IELMDGEIEVISEVGKGTEFIVKL 659


>gi|255527532|ref|ZP_05394399.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255508770|gb|EET85143.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 557

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/504 (18%), Positives = 200/504 (39%), Gaps = 30/504 (5%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE--FL 359
              L H  ++++N++  I +FD N  L   N++  ++  + +  L    +  E  +  ++
Sbjct: 35  KQHLMHLKDVINNISEGIMVFDTNEKLSLCNKAVFKILNLKVIQLVDESAFSEKYKAIYI 94

Query: 360 RSANKLPEQ--LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGT 412
               +  E+   ++   K+ + ++    E  + T+ +   + L + ++      +    T
Sbjct: 95  NDEGQTTEKTIYDYIKVKKTMRNMIFKIED-RVTFEI---KYLELNISPILNKKDEIIYT 150

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEE 471
           I   +++T     +           + ++ +   +AV    G   +L N  +  +     
Sbjct: 151 IMTIKDVTESRLHQINAEEQAAFIKDVVNTVDVPIAVVDYPGISYRLMNKKYEQILGYNN 210

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-----SVL 526
             +         A  C +   +    +L+  I+ S  ++ K        + D        
Sbjct: 211 YIM-----FDEKALDCEKGSYKYVKGNLY-KILNSVGEKNKPYAINPYKIEDDKGEERFY 264

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +    P  N  +          +  E      N  L K  ++K+ F   +S+ELR+PLT 
Sbjct: 265 KIKFTPYKNKNSNTRIHIYGSDITEE---VNHNIELEKITKLKDEFFTIISHELRTPLTI 321

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I     L        +     + +  I+ + + LL L+N+ILD++  +AG + +N +   
Sbjct: 322 ICSSLQLAYDVYDKEITPNMDKTLSRINQNCSRLLKLINNILDISKAEAGFLSVNNTNFE 381

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
              +   +  S  +      I +   ++ +  +   D+ +  +I   +LSNA+ F+ +G 
Sbjct: 382 AVYVSEVIINSSNSYAVSKGIELIFDTNQEEINVRLDKDKYEKILLNLLSNAIKFTPEGK 441

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
            +I+    +   F  SVK+ G  IP D   S+F+RF        RR  G G+GL++V+  
Sbjct: 442 KIIVTLKSEEEYFYLSVKDFGIGIPGDKINSIFDRFSQLNSSLTRRAEGTGIGLALVKKI 501

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I L  G + + S     T    ++
Sbjct: 502 IELMDGEIEVISEVGKGTEFIVKL 525


>gi|148270267|ref|YP_001244727.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
 gi|147735811|gb|ABQ47151.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
          Length = 412

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 169/392 (43%), Gaps = 39/392 (9%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +++FE L   VD   +  + V+V  +     ++ LSE + +   +G+I   N   R L +
Sbjct: 46  LYLFERLKKYVDNLKETISRVEVSRDNFLTILNSLSEPIFILDREGKITFLNEIARELVQ 105

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---V 525
                         I      YY   + + +   +  +   E +  +GTL     +    
Sbjct: 106 G------------RINPEGRPYYEIFEDYYISEMVEETIKSE-EPQEGTLVTYVGNEKKY 152

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
               +IP+        FV +   V  ER L          DE++  F+  VS+ELR+PLT
Sbjct: 153 FHVKVIPVELKSGDKIFVILFHDVTKERKL----------DEMRREFIATVSHELRTPLT 202

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I G+ + L    L        ++++ I   S  +  L+ND+LDL  ++   +      +
Sbjct: 203 SIHGYAETLLEDDLED-KELVKRFLKIIEEESARMTRLINDLLDLEKMEESEVNFEMKDV 261

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS--- 702
            L +++  V + I     EN + + V  +  +     +++RL+Q+   ++ NA+ ++   
Sbjct: 262 DLCEVIEYVYKIIQPIAEENEVDLVVECEDVV--VRGNKERLIQMLLNLVDNAVKYTSLK 319

Query: 703 SKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
            KG   V ++A       +  V++ G  IP++    +F +F         +  G GLGL+
Sbjct: 320 EKGEKKVWVRAYDTPDWVVLEVEDTGPGIPKEAQSRIFEKFYRVDKARSRKMGGTGLGLT 379

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV++ ++ HGG + + S     T +   +P +
Sbjct: 380 IVKTIVDKHGGRIEVESEINQGTVMRVFLPKR 411



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 11/141 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +S+     D       IL++L+  I I D+   + F N    EL  +            E
Sbjct: 63  ISRVEVSRDNF---LTILNSLSEPIFILDREGKITFLNEIAREL--VQGRINPEGRPYYE 117

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + E    +  + E +  +  +E     Y  +E  K  +H+   + + V + S      + 
Sbjct: 118 IFEDYYISEMVEETIKSEEPQEGTLVTYVGNE--KKYFHV---KVIPVELKS-GDKIFVI 171

Query: 415 MFENLTVQVDLETKYNTLVKV 435
           +F ++T +  L+      +  
Sbjct: 172 LFHDVTKERKLDEMRREFIAT 192


>gi|153807923|ref|ZP_01960591.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
 gi|149129532|gb|EDM20746.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
          Length = 991

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/407 (23%), Positives = 187/407 (45%), Gaps = 21/407 (5%)

Query: 400 LHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
             +++  NP    I +F  + T     + K +T+      ++D  +     +    R  L
Sbjct: 449 YDIVLRGNPHNKMIDVFCLDSTELHRAQQKLSTINNKLAMSLDVANIVPWKWDLTSRTIL 508

Query: 459 S--NPAFR---SLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
              N             E +L+     +   I     R   E    DL         +E 
Sbjct: 509 CDINKPIELSTQGKGIAEEQLAVPDIQYFSKIFKE-DRKRVEQAYKDLIEGRSEKVKEEY 567

Query: 512 KSLQGTLELLSDSVLEYSI---IPLPNAQTMLTFVN---VTDSVRAERALTEKNEALRKA 565
           + +           +E          N + +    +   +T+  + E+ L        ++
Sbjct: 568 RVINTHKGFHRIEWVEAQAAVETRDENGKPLTLVGSSLIITERKKMEQELINAKNRAEES 627

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K++F+ ++S+E+R+PL  I+GF+ +L +++       + +YV  I  ++T+LL L++
Sbjct: 628 NRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE---KQEYVSIIENNNTLLLQLIS 684

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL+ ++AG + L+YS + +NDL+ E++ S   K+  +N++++ ++  +      ++ 
Sbjct: 685 DILDLSKIEAGTLDLHYSNVEINDLMRELENSCQLKLKSDNVKLEFVAPEEPCFANIEKN 744

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q+    ++NA+ F+S+GS +     R N +  F V + G  IP+D   S+F RFV  
Sbjct: 745 RLSQLIINFVTNAIKFTSQGS-IRFGYERQNNELYFYVTDTGCGIPQDKLDSIFGRFVKL 803

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               Q  G GLGLSI  + IN  GG + + S +   +T    +P K+
Sbjct: 804 NSFAQ--GTGLGLSICRTLINHMGGKIGVESEEGKGSTFWFTLPYKQ 848


>gi|116628743|ref|YP_813915.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC
           33323]
 gi|238852957|ref|ZP_04643356.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282852391|ref|ZP_06261733.1| PAS domain S-box [Lactobacillus gasseri 224-1]
 gi|116094325|gb|ABJ59477.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           gasseri ATCC 33323]
 gi|238834407|gb|EEQ26645.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282556133|gb|EFB61753.1| PAS domain S-box [Lactobacillus gasseri 224-1]
          Length = 621

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 168/421 (39%), Gaps = 38/421 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKY-NTLVKVQGETID 441
            E  K    + NG  + HV V +    G +   F  L+V+++   +  ++  +     + 
Sbjct: 213 EEMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEISDSERRRLDNVLT 272

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE--SDGWDL 499
           H+++GV      G I + N          E  +  G  I N+         +  S   +L
Sbjct: 273 HMTDGVIATDRHGNITIINETALDFLGKTEKDV-IGKPITNLLGLKDVTIQDLLSTQQEL 331

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +  +  DE                 +S+I             + D  + +       
Sbjct: 332 VVRVNDNTRDEMILHA-----------NFSLIQRVTGFVSGLVCVLHDITQQQ------- 373

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K +  +  FV +VS+ELR+PLT++  + + L        N    Q++  I   +  
Sbjct: 374 ----KNEREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNI-APQFLHVIQDETER 428

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-------ATKMHENNIRIKVI 672
           ++ ++ND+L L+ +D G+ +++   + LND +N V           + KMH+    IK  
Sbjct: 429 MIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKRE 488

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D  +++Q+   I++NA+ +S  G  + ++  +     I S+ + G  IP 
Sbjct: 489 FPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLGIPR 548

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F+RF         ++ G GLGL+I +  +  H G +   S++   +T    +P 
Sbjct: 549 KDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISLPY 608

Query: 791 K 791
           +
Sbjct: 609 E 609


>gi|227889096|ref|ZP_04006901.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
 gi|227850325|gb|EEJ60411.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
          Length = 621

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 167/421 (39%), Gaps = 38/421 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKY-NTLVKVQGETID 441
            E  K    + NG  + HV V +    G +   F  L+V+++   +  ++  +     + 
Sbjct: 213 EEMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEISDSERRRLDNVLT 272

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE--SDGWDL 499
           H+++GV      G I + N          E  +  G  I N+         +  S   +L
Sbjct: 273 HMTDGVIATDRHGNITIINETALDFLGKTEKDV-IGKPITNLLGLKDVTIQDLLSTQQEL 331

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +  +  DE                 +S+I             + D  + +       
Sbjct: 332 VVRVNDNTRDEMILHA-----------NFSLIQRVTGFVSGLVCVLHDITQQQ------- 373

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K +  +  FV +VS+ELR+PLT++  + + L        N    +++  I   +  
Sbjct: 374 ----KNEREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNI-APKFLHVIQDETER 428

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-------KMHENNIRIKVI 672
           ++ ++ND+L L+ +D G+ K++   + LND +N V             KMH+    IK  
Sbjct: 429 MIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKMHKKKYSIKRE 488

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D  +++Q+   I++NA+ +S  G  + ++  +     I S+ + G  IP 
Sbjct: 489 FPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLGIPR 548

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F+RF         ++ G GLGL+I +  +  H G +   S++   +T    +P 
Sbjct: 549 KDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISLPY 608

Query: 791 K 791
           +
Sbjct: 609 E 609


>gi|21244408|ref|NP_643990.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110069|gb|AAM38526.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 631

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/498 (19%), Positives = 191/498 (38%), Gaps = 53/498 (10%)

Query: 320 AIFDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            +FD  + + +     N +F     +    L  +             N LPE    + W 
Sbjct: 1   MVFDGEQAVDYVIRTTNGAFERYTGLSPNALNVSI-----------RNLLPEHE--QEWF 47

Query: 376 ENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +    V ++    H +       +   V    V    +     +F ++T +  +E +   
Sbjct: 48  DRYGHVARTGNRIHFEMQAKALKRWYSVDAFRVGQPEQARVAILFMDITERKRVERELAE 107

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
                    D L   V V    G ++  N A+   +  + +  +         +  S   
Sbjct: 108 SEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT--------VSAWSELL 159

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVNVTDS 548
           +  D       +  S  ++R           D     +E +  P  +A      +  +  
Sbjct: 160 HPDDLPTFQFELAASLQEQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSP 219

Query: 549 VRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              E R +    E L +++            +K+ F+  +S+ELR+PLT I+G+++LL  
Sbjct: 220 DVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQ 279

Query: 597 SKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                +   Q  Y  +  I++S+     L++D+LDL+++  G ++L   ++ L + + E 
Sbjct: 280 R----VEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREA 335

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +        +  +++         + D  RL Q+   +LSNA+ F+     + +K  R
Sbjct: 336 LNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIER 395

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           D+G  + SV ++G  I  +    +F RF        R   G+GLGL+IV+  + +HGG V
Sbjct: 396 DDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQV 455

Query: 773 SISSSD-EGVTTINCRIP 789
             +S       T   R+P
Sbjct: 456 GATSGGRGKGATFTVRLP 473



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +      ++ T  
Sbjct: 94  DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVS 153

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +    +    F+ E+   +     L             G  +  ++           
Sbjct: 154 AWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRH---DGQWRWIEMTATPRYSADGR 210

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G AG + DV+++  +        E
Sbjct: 211 FIGLAGSSPDVTEQREIELAREQLLE 236



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 28/237 (11%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N ++++ T         +I       ++E   R                       + Y 
Sbjct: 17  NGAFERYTGLSPNALNVSIRNLLPEHEQEWFDR--YGHVARTGNRIHFEMQAKALKRWYS 74

Query: 279 IVRV----LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
           +             A + +D+++   V  +L  +      L   +     + D    ++F
Sbjct: 75  VDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRF 134

Query: 331 HNRSFVELWEIDL------AFLATNPSNDELLEFLRSANKLPEQLNWKTW--KENIFSVY 382
            N ++ E + +D+      A+      +D        A  L EQ   +           +
Sbjct: 135 VNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQW 194

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +  E      +  +G+ +          G      ++T Q ++E     L++ +   
Sbjct: 195 RWIEMTATPRYSADGRFI----------GLAGSSPDVTEQREIELAREQLLESERSA 241


>gi|298504148|gb|ADI82871.1| sensor histidine kinase, HAMP and PAS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 762

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 183/447 (40%), Gaps = 27/447 (6%)

Query: 355 LLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           + E      ++ E +L  +    +   + + +E         + +   +   ++      
Sbjct: 331 VRELADGVRRIEEGELQQRVAVTSSDEIGELAEAFNRMAAAIDERDRTIRTKAHDLENLN 390

Query: 414 WMFENLTV--QVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               ++    +  +E +   L          +  ++EG+AV   DGR+ L NPA + L++
Sbjct: 391 LKLTDMNEFLERRVEERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFE 450

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLE 527
              +R+  G  I +I        N+ +   L   I +  ++  ++    ++L      L+
Sbjct: 451 MVPHRVV-GQPILDI-------CNQGEFCRLVEHITSMGENRDQATVREVDLDARGKKLK 502

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            ++ PL +       V ++                 + D +K  F+  VS+EL++PLT+I
Sbjct: 503 VTLAPLVDGDGHFAGVVMSVRDVTAEE---------EVDRMKTEFISTVSHELKTPLTSI 553

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G   L+     G  + +  + +     ++  L+ LVNDILD+A +++G M+   S    
Sbjct: 554 KGSLQLIVDKSRGFTDVE-KELLGVCLRNTERLIRLVNDILDIAKIESGKMEFALSPHSP 612

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +L+    + +     E+ + +       L +   D  RL Q+ + +++NA+ FS +G+ 
Sbjct: 613 AELVEWSVRELEGFAREHGVTVVNEVSADLPAIYGDGDRLGQVLTNLIANAVKFSPRGAV 672

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           V + A + +     SVK+ G  I       +F RF       R Q  G GLGL+I +  +
Sbjct: 673 VTISAEQSDNFVAVSVKDRGREIQWADRGKLFKRFQQIDSGDRRQHGGTGLGLAICKEIV 732

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
             H G +  S    G       +P  E
Sbjct: 733 ERHHGRIFYSEGIGGGNVFTFTVPIHE 759



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 24/142 (16%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-- 353
            +   +  ++     IL ++   IA+ D++  +   N +  +L+E+    +   P  D  
Sbjct: 406 ERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFEMVPHRVVGQPILDIC 465

Query: 354 ---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              E    +     + E  +  T +E                    G+ L V +     G
Sbjct: 466 NQGEFCRLVEHITSMGENRDQATVREVDLD--------------ARGKKLKVTLAPLVDG 511

Query: 411 -----GTIWMFENLTVQVDLET 427
                G +    ++T + +++ 
Sbjct: 512 DGHFAGVVMSVRDVTAEEEVDR 533



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 47/145 (32%), Gaps = 13/145 (8%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
               +   L   +   + +  S+   +   D+ G ++  N + ++  E   +V  + +G+
Sbjct: 403 RVEERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFE---MVPHRVVGQ 459

Query: 240 S-RKLFKEEIKKRMISSSALEKNFCETVSTLE---HGNNKSYKIVRVLNSFGEAGIA--- 292
               +  +    R++          +  +  E       K  K+       G+   A   
Sbjct: 460 PILDICNQGEFCRLVEHITSMGENRDQATVREVDLDARGKKLKVTLAPLVDGDGHFAGVV 519

Query: 293 ---IDVSKEITVNDQLTHTYEILHN 314
               DV+ E  V+   T     + +
Sbjct: 520 MSVRDVTAEEEVDRMKTEFISTVSH 544


>gi|307155071|ref|YP_003890455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985299|gb|ADN17180.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1200

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 156/381 (40%), Gaps = 29/381 (7%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                +     +   ++ +  +         +P +  +   +    S    +        
Sbjct: 572 LRESEERYSLAVSGSNDAIWDWDLRTNSVYYSPVWMKISGEDNYYYSNCWSL------WQ 625

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQ-----TM 539
              +  D   + ++I    + +    + T  +         +E     L + +      +
Sbjct: 626 ENIHSEDLPLVLSSIQNHLEGKNPIYEQTYRIKHCQGHYIWVEAKAKCLHDREGKPYRMV 685

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            T  ++T   +AE  L    EA   A+ IK+ F+ ++S+E+R+P+  I+GF +LL     
Sbjct: 686 GTITDITAKKQAEEELKAAKEAAEIANRIKSQFIANISHEIRTPMNAILGFCELLLNIHN 745

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              + +   Y++ IS+S   LL L+NDILDL+ ++AG ++LNY  I L +L+ +V Q  +
Sbjct: 746 ---DPRTLSYIQSISSSGRTLLALINDILDLSKIEAGKLELNYEPINLRELIIDVCQIFS 802

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-- 716
           T+     +++    +  +   +  D  RL QI   I+ NA+ F+ KG  V +    +N  
Sbjct: 803 TQAQTKKLQLLTEFEPNVPHVINFDEVRLRQILFNIIGNALKFTEKG-YVKVTVFSENLA 861

Query: 717 -----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
                     SV++ G  I       +F+ F  +      +  G GLGLSI +    + G
Sbjct: 862 TNNNYIQLKISVEDTGIGIATGQQDRIFDMFTQSEGQSTRKYGGTGLGLSITKRLTEMLG 921

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + + S     +      P 
Sbjct: 922 GQIILQSELGKGSIFTLIFPK 942


>gi|315122620|ref|YP_004063109.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496022|gb|ADR52621.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 709

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/442 (24%), Positives = 198/442 (44%), Gaps = 54/442 (12%)

Query: 393 HLPNGQTLHVIVTS----NPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           H   G+ + + V +       GG   I +  ++T Q  LE +Y  + +   + I+  SE 
Sbjct: 278 HYSTGRDVWIKVRAQVMNTLSGGMNVIGIAMDVTEQYYLEKRYAEVDQRLSKAIECTSES 337

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
             ++  + R+ + N  ++ ++   ++ L PGT    I              +      TS
Sbjct: 338 FVLWDKNDRLVMCNAKYQQVYGLPDHVLIPGTKRSIINEA---------QINPVVEYYTS 388

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT---------- 556
                +++   ++L+    L+ +    P+A T+    ++T   R ++ L           
Sbjct: 389 DPKRLQNISKEIKLVDSRWLQINEWHTPDAGTISVGTDITQLKRNQKKLRESERRLKATI 448

Query: 557 -------------------------EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                                     + E    A+  K+ F+  +S+ELR+PL  I+GF+
Sbjct: 449 NDLSTSRQILERQKTELSIANAKYQTEKERAEMANRAKSEFLAKMSHELRTPLNAILGFS 508

Query: 592 DLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +++K    G L S K  +YV+ I  S   LLNL+N+IL+++ +++  + +N     L  +
Sbjct: 509 EIIKGETFGKLGSVKYYEYVKDIHDSGKHLLNLINNILEMSKIESEHIAINKKNTNLIPI 568

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +NE  QSIA+   + NI I+     +L    AD + + +I + I SN++ F++ G  +I+
Sbjct: 569 INESLQSIASSAQKKNIMIEKNISPEL-FCNADERIIKKILTPIFSNSIKFTNNGGKMIV 627

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
           + +R N   I +V + G  IP+   K V   F    ++      G GLGL+I ++  NLH
Sbjct: 628 QTSRVNDSVIITVADTGIGIPKSALKKVGKPFEQLHNQYDQNTGGSGLGLAISDALTNLH 687

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + I S +   T I   +P 
Sbjct: 688 GGKLEILSQEGEGTVIKIGMPK 709



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 67/182 (36%), Gaps = 16/182 (8%)

Query: 288 EAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             GIA+DV+++  +  +         + +   + +  ++D+N  L   N  + +++ +  
Sbjct: 303 VIGIAMDVTEQYYLEKRYAEVDQRLSKAIECTSESFVLWDKNDRLVMCNAKYQQVYGLPD 362

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             L            +  A   P    + +  + + ++ K  +       L + + L + 
Sbjct: 363 HVLIPGTKRS----IINEAQINPVVEYYTSDPKRLQNISKEIK-------LVDSRWLQIN 411

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPA 462
               P  GTI +  ++T     + K     +    TI+ LS    +       + ++N  
Sbjct: 412 EWHTPDAGTISVGTDITQLKRNQKKLRESERRLKATINDLSTSRQILERQKTELSIANAK 471

Query: 463 FR 464
           ++
Sbjct: 472 YQ 473


>gi|224537669|ref|ZP_03678208.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520728|gb|EEF89833.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 431

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 170/392 (43%), Gaps = 40/392 (10%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPD------------------------GRIKLS 459
           +         ++    + ++   + +   D                        G +   
Sbjct: 35  NARKALRGSEELFRSIMQNVHAFILLIDRDFVVTRTNYYDITKARQPEGRLARVGDLLRC 94

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N A  +      + L     IR       R   +S   DL A  I    D R  +     
Sbjct: 95  NNALSAEGGCGTHELCGSCPIRKKIEETFR--AKSSFTDLEA--ILDIRDRRGEVAECDT 150

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            +S   +E           ++T  ++T   +AE  L    E    AD  K++F+ ++S+E
Sbjct: 151 YVSGEYMEID----DKEGMVITVHDITRLKKAEAELNRAREKAENADRSKSAFLANMSHE 206

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++LL +    S   +++Q++E + +++ +L  L+ DILDL+ ++AG ++
Sbjct: 207 IRTPLNAIVGFSELLAS---ASTEEEKAQFLEIVHSNNELLQQLIADILDLSKIEAGTLE 263

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             +S + +N L+ +++Q    ++ + +  I+I   +         DR RL Q+ S  ++N
Sbjct: 264 FTFSEVDVNQLMFDIEQLFRMRLEDKSAVIQIIRQTPPDECVMYTDRNRLQQVVSNFMTN 323

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A+ F+ +GS +     R      F VK+ GS IPED    +F RFV       ++G GLG
Sbjct: 324 AVKFTDEGS-ITFGYNRCAEGLYFYVKDTGSGIPEDKVNHIFERFVRVEQ--NKKGTGLG 380

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I E  I   GG + + S     +T    +P
Sbjct: 381 LAICEMIIRKLGGKIGVESEYGKGSTFWFTLP 412


>gi|162449765|ref|YP_001612132.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161160347|emb|CAN91652.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1984

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 111/521 (21%), Positives = 204/521 (39%), Gaps = 38/521 (7%)

Query: 292  AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            A     E +++D       IL N    + +   +      NR + ++  +    +     
Sbjct: 1460 AQRRRAEASLHDSNALLQAILDNTPAVVFVKAPDGRYLLINRRYEDVVHVSREDILGKTD 1519

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVT---S 406
            ++     +  A            + N  +  +     +   ++  P+G    + +     
Sbjct: 1520 HELFPAEIADAV-----------RANDLAALREDHPIERDEYVAAPDGIHTFLSLKFPLR 1568

Query: 407  NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
            +P G       +  ++T +   E        +   T+D  ++G+ V    GR    N  F
Sbjct: 1569 HPDGRSYAVCGIATDVTERKRAEEMLRHSHALLEATLDSTADGILVVDDAGRPVRHNRRF 1628

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLS 522
            R +W   E  L       +  A C     +S+     A +  S DD R+ S   TL    
Sbjct: 1629 REMWGIPEQVLLSQ---DDRLALCLDQLADSEQLLQEARMTRSVDDPREASGIDTLTFDD 1685

Query: 523  DSVLEYSIIPLPNAQT----MLTFVNVTDSVRAERAL-------TEKNEALRKADEIKNS 571
              V E    P   +      + +F +VT  V+AE+                 +A   ++ 
Sbjct: 1686 GRVFERYSQPQRVSGRIVGRVWSFRDVTTRVQAEQQRDRLLADEQRARARAEEAVRARDE 1745

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKT--SKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            F+   S+ELR+PLT++      ++   S+      +    V+     +  L+ LV+ +LD
Sbjct: 1746 FLSVASHELRTPLTSLQLAVHSMEKKLSRGAEGIERARASVDLSQRQTKRLVALVDMLLD 1805

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
            ++ + AG ++L+   I L  ++ EV   +  ++      + V + G +     D QRL Q
Sbjct: 1806 VSRIHAGRLELDPIEIDLRAIVGEVTTYLDDQLARAGCALDVRAAGPVVGRW-DAQRLEQ 1864

Query: 690  IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            + + +LSNA+ F   G  + L  A D      SV ++G  IP D+ + VF R+       
Sbjct: 1865 VVTNLLSNAIKFGG-GKPLELTIASDGETARLSVTDHGIGIPADVREQVFERYRRGVSSR 1923

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               G+GLGL I  + +  HGG VS+SS     +T +  +P 
Sbjct: 1924 HYGGLGLGLYITRTIVEAHGGRVSVSSEIGEGSTFSVELPL 1964



 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 101/294 (34%), Gaps = 28/294 (9%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
            +  E A+       L +  ++ + + D+   +V+ +   G  L  N  Y+       +  
Sbjct: 1455 LQQENAQRRRAEASLHDSNALLQAILDNTPAVVFVKAPDGRYLLINRRYEDVVH---VSR 1511

Query: 234  QKAIGESR-KLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRVL---- 283
            +  +G++  +LF  EI   + ++             +       G +    +   L    
Sbjct: 1512 EDILGKTDHELFPAEIADAVRANDLAALREDHPIERDEYVAAPDGIHTFLSLKFPLRHPD 1571

Query: 284  -NSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
              S+   GIA DV++     + L H        L +    I + D       HNR F E+
Sbjct: 1572 GRSYAVCGIATDVTERKRAEEMLRHSHALLEATLDSTADGILVVDDAGRPVRHNRRFREM 1631

Query: 339  WEIDLAFLATNPSNDEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            W I    L +      L L+ L  + +L ++       ++         +  DT    +G
Sbjct: 1632 WGIPEQVLLSQDDRLALCLDQLADSEQLLQEARMTRSVDDPREA-----SGIDTLTFDDG 1686

Query: 398  QTLHVIVTSNPRGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            +            G I    W F ++T +V  E + + L+  +        E V
Sbjct: 1687 RVFERYSQPQRVSGRIVGRVWSFRDVTTRVQAEQQRDRLLADEQRARARAEEAV 1740


>gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 542

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 129/243 (53%), Gaps = 3/243 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L         A+  K  F+ ++S+ELR+PL  IIG+TDLL     G LN KQ +Y+  
Sbjct: 153 KNLEAAKLLQEHANRAKTQFLSNMSHELRTPLNVIIGYTDLLSEQLPGKLNEKQLRYIGE 212

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I++S   LL+L+ND+LD++ +DAG M+L    + +++L+N +   ++ +  +  I++K+I
Sbjct: 213 INSSGKFLLSLINDLLDMSKIDAGAMELELEDVSIDELINGMVSMMSRQFVKKKIKVKII 272

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIP 731
            + +L   +AD ++  QI   +L+NA+ F+ K   V + A  D        V++ G  I 
Sbjct: 273 IEPELSVVMADLRKCKQILMNLLTNALKFTPKDGRVEICAVSDGDSGVKIEVRDTGIGIA 332

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED    +F+ F    +       G G+GL++    + LH G + + S     +T    +P
Sbjct: 333 EDKIDKIFSEFYQAENVIDEQLGGTGIGLALTRRLVELHDGKIGVESKLGKGSTFWFTLP 392

Query: 790 SKE 792
            K+
Sbjct: 393 LKK 395


>gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 801

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 166/399 (41%), Gaps = 29/399 (7%)

Query: 410 GGTIWMFENLTVQVDLETK---YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G  +++ E    +   E      N   +     +D    G     P+     ++  +R +
Sbjct: 229 GSVLYLLER--NRRKAERDALMLNATRERVQLALDAAEMGAWNIDPETNTLQTDERYRRI 286

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
              E+  ++    ++ I         ++       A ++  D    S++  +     S+ 
Sbjct: 287 HGVEQEEMTFEDSLKRIHPDDRARVRQA-----VRASMSPLDPSPYSVEYRVVHRDGSIR 341

Query: 527 EYSIIPLPNAQTML----------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             S   +  A              T  +VT+  R E  L    +    A++ K+ F+ ++
Sbjct: 342 WVSSKGIARASRRRGKAVLTSFDGTVADVTERKRQEERLQRSEQIALAANQSKSEFLANM 401

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  I+G+ D+L        N      V  I  +   LL+L+NDILDL+ ++AG
Sbjct: 402 SHEIRTPMAAILGYADVLLGHLEDPDN---RNCVMIIKRNGEHLLSLINDILDLSRIEAG 458

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695
            + ++  ++ L  L+ +++  +  +  E N+  +V  +G++  S   D  RL Q+   ++
Sbjct: 459 KLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLI 518

Query: 696 SNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
            NA+ F+ +GS    V      D     FS+ + G  I ++    +F  F         +
Sbjct: 519 GNAIKFTDEGSVRLKVRFMKGADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRK 578

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGL+I +  I +  G +S+ S     +T   R+P
Sbjct: 579 YGGSGLGLAISQRLIEMMDGEMSLESELGEGSTFFVRLP 617


>gi|163851209|ref|YP_001639252.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163662814|gb|ABY30181.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 1125

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 111/704 (15%), Positives = 226/704 (32%), Gaps = 74/704 (10%)

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
             LR   +        + D       R       LR +    I ++  E   +       
Sbjct: 143 AALRDLAEIVTAQMRLRRDNLAFASERA------LRQIHESTIRAQGVEIERRASA---- 192

Query: 192 ISVFKVLFDSL-DFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
            +    + + +     W  +  +G  +++  S  +    +            +L     +
Sbjct: 193 -NSLLTMAEQIAQVGHWRLNFASGQPIYS-ESLLRIAGLDAAAPTTRHPGLAQLCHPADR 250

Query: 250 KRMISSSAL---EKNFCETVSTLEHGNNKSYKIV--------RVLNSFGEAGIAIDVSKE 298
            R+ +  A         E  +     +     ++            + G  GI +DV+  
Sbjct: 251 GRVEAIIAAAIAGGQDFEVETRFVRPDKTIRDVMVRGTCKTDEAGRTIGLFGILMDVTDR 310

Query: 299 ITVNDQLTHTYEILHNLTVAIAIF----DQN-RYLQFHNRSFVELWEIDLAFLATNPSND 353
           + +  ++  +     +L  A+ +     D +     + N  F + +          P   
Sbjct: 311 VQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRFEDYYG---------PIGA 361

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFS-------VYKSSETHKDTWHLPNGQTLHVIVTS 406
             ++ L   +          W+    S           +      WH  +   +      
Sbjct: 362 ARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQARDGSYRWHKMSITPIRNAGDP 421

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID---------HLSEGVAVFGPDGRIK 457
                 I    ++   V          ++ G  ++         +L  G+ V  P+    
Sbjct: 422 AGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTFDWNLRTGITVLSPESVRL 481

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              P             +   H  ++    +R ++  D    F A          +   T
Sbjct: 482 YGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSRFIAEYRVGQRWLYTSGRT 541

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L            + L   +       +  +    RA T + E        K+ F+  +S
Sbjct: 542 LYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAATVEAERA---SAAKSEFLAAMS 598

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+G+ DLL   +      ++   +E I  S   LL +VND+LD++ ++AG 
Sbjct: 599 HEIRTPLNGILGYADLLLDRRDHDPEDQRR--LELIRVSGESLLTVVNDVLDVSKIEAGQ 656

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696
           ++L+     L  L+ +    +     ++ + ++   D  L +  V D  RL Q+   +L+
Sbjct: 657 LELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPASVVGDANRLRQVLFNLLN 716

Query: 697 NAMDFSSKGSTVILKAARDN----------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           NA+ F+  GS V L A  +               F + + G  I       +F  F    
Sbjct: 717 NAVKFTPAGSVV-LTARYEGSVPGADGGTAEALRFEISDTGIGIAPSQRHRLFKPFSQVD 775

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               RR  G GLGL+I    + + GG + + S +   +T    +
Sbjct: 776 GSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFTL 819


>gi|114563977|ref|YP_751491.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
 gi|114335270|gb|ABI72652.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
          Length = 1632

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 126/659 (19%), Positives = 253/659 (38%), Gaps = 65/659 (9%)

Query: 181  TTLKCKKLSNHISVFKVLFDSLDFLVWH--RDQAGDILWANISYKKNTETEGIVFQKAIG 238
             T + + L   +S  K L D+++  + +   D+ G IL  N ++    +T G   ++ IG
Sbjct: 482  VTERTQALQQALSENKTLLDNINQQLLYSETDKNGVILVVNDNF---CQTSGFTREQMIG 538

Query: 239  ESRKLFKEEIKKRMI------SSSALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGE-- 288
            +   + K     R        +  A E    E  +  + GN K     I  V++  G   
Sbjct: 539  KKHSILKSNEHDRAFWKQMWQTIHAGETWHEEICNRDKQGNIKWLDTVITPVMDENGNLV 598

Query: 289  --AGIAIDVSKEITVNDQLTHTYEILHNL-----TVAIAIFDQNRYLQFHNRSFVELWEI 341
                + ID+++      +      +L N+      +AI   D +  +   NR    L   
Sbjct: 599  RCIALRIDITERKNSQLEKNKLASLLTNVLAAATEIAIISTDNDGIINIFNRGAQLLLGY 658

Query: 342  DLAFLATN--PSNDELLEFLRSANK-LPEQLNWKTWKENIF---SVYKSSETHKDTWHLP 395
                +     P+   L   +R  +K L E+        ++F      +  ET   T+   
Sbjct: 659  QAEEIVGKQSPAILHLPSEIRQRSKELTEEFGEDISAFDVFVYKPRTQGPETRTWTYIRK 718

Query: 396  NGQTLHVIV-------TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +     V +        S    G + +  N+   +  + +  +      +  +    G+ 
Sbjct: 719  DLSQCQVSLSVSAMRDQSGEIVGYLGVAVNIDQMLKQQEELVSASNQLSKAAEVAELGIW 778

Query: 449  VFGPDGRIKLSNPAFRSLW---------KTEENRLSPGTHIRNIAAT---CSRYYNESDG 496
                D      N    +++                    H  +I        +  + +  
Sbjct: 779  NLDLDTDNLQWNDRMFAMYDYPLALTEKGLNYQHWQKRVHPDDIEMAELALQQAIDLNIP 838

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            ++    IITS +  R    G       +     ++ +          ++T+    E+ L 
Sbjct: 839  YEPTFRIITSSNQIRYIHAGAQISYDKTGKPVRVVGI--------NRDITEQRELEQTLR 890

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               +A   A   K++F+ ++S+E+R+P+  ++G   L++ S    ++ +Q+ YV     +
Sbjct: 891  LAKQAADAASAAKSAFLANMSHEIRTPMNAVLGMLQLIQHS---DMSRQQADYVTKAENA 947

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            +  LL L+NDILD + +DAG ++L+     L  L+ E+   +A  +H  ++ +    D  
Sbjct: 948  AKSLLGLLNDILDFSKIDAGKLELDLHPFQLETLMRELAVMLAANVHSQHLEVIFDLDPA 1007

Query: 677  LGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIP 731
            +   +  D  RL Q+   +  NA+ F+S+G  ++     +   +  +   S+ ++G  I 
Sbjct: 1008 IPYLIEGDELRLRQVLLNLAGNAIKFTSEGHVIVGVQCNECTANQVNLTISITDSGIGIS 1067

Query: 732  EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F  FV       RR  G GLGL+I +S + L GG +S+SS     +     +
Sbjct: 1068 PEQSSKIFQGFVQAESSTSRRFGGTGLGLAITKSLVELMGGELSLSSHVGEGSRFWFEL 1126


>gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 988

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 158/382 (41%), Gaps = 17/382 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAV---FGPDGRIKLSNPAFRSLWKTEENRLS 475
           +  Q   E       +     I     G+ +   F  +  +  +N A   +     ++L 
Sbjct: 453 ILDQKKAEQALVKSEETLRSIIQETPIGIHIYELFERELVLTGANQAADLILGINHSQL- 511

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               I            E++  D +  ++ +         G  ++      E     + +
Sbjct: 512 ----IGKKLNDAFPMLEETNISDQYLEVLKTGKTWHTEQIGYEDVNISGTYEILCFRIFS 567

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            Q  + F++++   + E  L     A   +++ K+ F+ ++S+E+R+PL  I+G   LL+
Sbjct: 568 NQIAVMFMDISSRKQEEFELENAKRAAESSNKAKSEFLANMSHEIRTPLNGIMGMLQLLE 627

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           ++     + +QS+Y++   +S   L  L++DILDL+ ++ G + L      ++ L  EV 
Sbjct: 628 ST---DTDHEQSEYIDIALSSCRNLTRLISDILDLSRIEHGNITLENHGFNISHLTEEVI 684

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILK 711
            +  T++    I +    +  +   V  D  RL QI   I  N++ F+S G     +   
Sbjct: 685 NTFITELSSKEIELSTSIEKNIPEIVYGDSGRLRQIIFNIFGNSIKFTSSGRIFINIDSL 744

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
             R        V + G  IPED    +F  F         +  GVGLGLSIV+  +   G
Sbjct: 745 IQRQTIYLFIEVSDTGIGIPEDKLDEIFVPFTQADGSLTRKYGGVGLGLSIVKKLLIAMG 804

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +++ S+ +  TT    IP +
Sbjct: 805 GTITVESNIDKGTTTCIAIPFQ 826



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 83/283 (29%), Gaps = 22/283 (7%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E     K +    S+F  + + L    +  D +  I+  N +  +  +  G + +     
Sbjct: 24  EIETLSKTVMQDKSLFNTVLNCLPMPYFLVDNSERIVQTNSASLEMLKISGPIEETYGKT 83

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK---------SYKIVRVLN-SFGEA 289
             ++F  + K     S  L +        +   +            + +    N   G  
Sbjct: 84  LAEVFYNDPKHITFMSQTLCQGIVYRDLEVPTKDRHGNDLNIIANIFPLYDTNNICIGGM 143

Query: 290 GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            I ++ ++       L  + +    ++ NL   + +   +  +   N    +L  + +  
Sbjct: 144 SIYVNHTERKMTQKALQESEKKNHDLIQNLHAGVVVHAPDSRIIVANDQASQLLGLSIPQ 203

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L    + D    F+           +   +         +       HL +   + V+V 
Sbjct: 204 LKGKNALDPEWCFIHEDGTKMSFAEYPVSQVIKTRSPVRNLILGINRHL-HKDLVWVLVN 262

Query: 406 SNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           + P           I  F N+T +   E +           ++
Sbjct: 263 AFPEFDQNNELLQVIVTFVNITDRKKYEEQILRNEMRLLSIVN 305



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 98/282 (34%), Gaps = 26/282 (9%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS-ANKLPEQL 369
           +L+ L +   + D +  +   N + +E+ +I      + P  +   + L       P+ +
Sbjct: 42  VLNCLPMPYFLVDNSERIVQTNSASLEMLKI------SGPIEETYGKTLAEVFYNDPKHI 95

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQ 422
            + +       VY+  E      H   G  L++I    P         G + ++ N T +
Sbjct: 96  TFMSQTLCQGIVYRDLEVPTKDRH---GNDLNIIANIFPLYDTNNICIGGMSIYVNHTER 152

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              +       K   + I +L  GV V  PD RI ++N     L      +L     +  
Sbjct: 153 KMTQKALQESEKKNHDLIQNLHAGVVVHAPDSRIIVANDQASQLLGLSIPQLKGKNALDP 212

Query: 483 IAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA----- 536
                     +    +   + +I +    R  + G    L   ++   +   P       
Sbjct: 213 EWCFIHEDGTKMSFAEYPVSQVIKTRSPVRNLILGINRHLHKDLVWVLVNAFPEFDQNNE 272

Query: 537 --QTMLTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQH 575
             Q ++TFVN+TD  + E   L  +   L   + +++ F   
Sbjct: 273 LLQVIVTFVNITDRKKYEEQILRNEMRLLSIVNILQHQFTSA 314


>gi|88797749|ref|ZP_01113337.1| PAS [Reinekea sp. MED297]
 gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297]
          Length = 1593

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 189/476 (39%), Gaps = 26/476 (5%)

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
            N  L  ++ +F ++W +  +      +N   L    +    P     +T    +FSV+ +
Sbjct: 622  NSELTLYSSTFGDVWMVSESIDFETRANSNFLTLYVARASTP---VLQTVLIRVFSVFTA 678

Query: 385  SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                        G     IV  N     I  ++    Q   + +     K+    ++   
Sbjct: 679  FAIVSFI-----GVLFQFIVWRNAARKRIDTYQQFHQQQQEKDR-----KLFKSLLESAP 728

Query: 445  EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            +   +    G I+L N     ++  E N L  G +I  +     +  +            
Sbjct: 729  DPTFIVDEQGIIQLVNRRSEQMFGYERNELL-GQNIDTLLPERFKANHPQQRAAFIQNPT 787

Query: 505  TSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQTMLTF-VNVTDSVRAERALTEKNEA 561
                   + L    +  ++  +E +  ++PL +   +     ++T+   +E  L      
Sbjct: 788  RRLMGVGRDLFARCKDGTEFPVEVTLGVVPLEDRTLVSAALRDITERKNSEEKLQHAITQ 847

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
               + E K++F+ + S+E+R+PL  IIG + LL      +L   Q   V+ I  S   LL
Sbjct: 848  AMSSAEAKSAFLANTSHEIRTPLNAIIGLSHLL---DHENLTENQHLLVDKIQLSGQSLL 904

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            N++ND+LDL+ ++A  + +  + + L +L+ +       +     + + +  D K+ ++V
Sbjct: 905  NIINDVLDLSKIEANEVDIESTPVNLRELIEDTLNVHRMQADLKGLEVALNIDPKVPNWV 964

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              D+ RL QI   + SNA+ F+S+GS      L    D     F V + G  I E   + 
Sbjct: 965  ETDKTRLKQILDNLFSNALKFTSEGSISLRCHLVEETDRATVRFEVIDTGIGISEKAQQQ 1024

Query: 738  VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F  F        R   G GLGLSI+   + L  G + + S +   +     +P K
Sbjct: 1025 LFEPFTQADVSTTRKYGGTGLGLSIILKLVYLMEGRLGLESEEGQGSRFWFELPFK 1080



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 41/146 (28%), Gaps = 10/146 (6%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                    +L +      I D+   +Q  NR   +++  +   L     +  L E  ++
Sbjct: 714 EKDRKLFKSLLESAPDPTFIVDEQGIIQLVNRRSEQMFGYERNELLGQNIDTLLPERFKA 773

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGGTI-WMF 416
            +        +     +  V +            +G    V VT           +    
Sbjct: 774 NHPQQRAAFIQNPTRRLMGVGRDLFARC-----KDGTEFPVEVTLGVVPLEDRTLVSAAL 828

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDH 442
            ++T + + E K    +     + + 
Sbjct: 829 RDITERKNSEEKLQHAITQAMSSAEA 854


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 10/249 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+ L    +A  ++  IK  F  +VS+ELR+PL  ++G  +LL+      L  KQ +YV
Sbjct: 255 REQELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNM---GLTPKQREYV 311

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669
           +    S   LL L+ +ILD + +++G  KL+ +   L ++L++    +A +    ++ + 
Sbjct: 312 QVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGLLAGQAQRKDLDLG 371

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKN 725
            V++     S   D  R+ QI   ++ NA+ F+ +G   V ++           +F VK+
Sbjct: 372 YVVAKNVPPSLRGDATRIRQILINLMGNAVKFTEQGEVSVEVQLLEKTAKKLVLLFEVKD 431

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +  K +F  F        R   G GLGL+I    ++L GG + + S   G + 
Sbjct: 432 TGIGIPIEFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESKFGGGSR 491

Query: 784 INCRIPSKE 792
               +P +E
Sbjct: 492 FWFTVPLEE 500


>gi|299149292|ref|ZP_07042352.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512726|gb|EFI36615.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 992

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 134/244 (54%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       ++ 
Sbjct: 610 RKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEEEKQ 666

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV  I  ++T+LL L++DILDL+ ++AG ++  YS I LN +LNE+  S+  K+    +
Sbjct: 667 EYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKSEKV 726

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++      K      ++ RL Q+   ++SNA+ F+++G  +         +  F V + G
Sbjct: 727 QLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG-YIRFGYELRGKEIYFYVSDTG 785

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T    
Sbjct: 786 CGIPKDKQKSIFGRFVKLNSFEQ--GTGLGLSICQTLVEHMGGTIGVDSEEGKGSTFWFT 843

Query: 788 IPSK 791
           +P K
Sbjct: 844 LPYK 847


>gi|293368956|ref|ZP_06615557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635976|gb|EFF54467.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 1014

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 134/244 (54%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       ++ 
Sbjct: 632 RKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEEEKQ 688

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV  I  ++T+LL L++DILDL+ ++AG ++  YS I LN +LNE+  S+  K+    +
Sbjct: 689 EYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKSEKV 748

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++      K      ++ RL Q+   ++SNA+ F+++G  +         +  F V + G
Sbjct: 749 QLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG-YIRFGYELRGKEIYFYVSDTG 807

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T    
Sbjct: 808 CGIPKDKQKSIFGRFVKLNSFEQ--GTGLGLSICQTLVEHMGGTIGVDSEEGKGSTFWFT 865

Query: 788 IPSK 791
           +P K
Sbjct: 866 LPYK 869


>gi|160885842|ref|ZP_02066845.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
 gi|156108655|gb|EDO10400.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
          Length = 992

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 134/244 (54%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       ++ 
Sbjct: 610 RKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEEEKQ 666

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV  I  ++T+LL L++DILDL+ ++AG ++  YS I LN +LNE+  S+  K+    +
Sbjct: 667 EYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKSEKV 726

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++      K      ++ RL Q+   ++SNA+ F+++G  +         +  F V + G
Sbjct: 727 QLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG-YIRFGYELRGKEIYFYVSDTG 785

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T    
Sbjct: 786 CGIPKDKQKSIFGRFVKLNSFEQ--GTGLGLSICQTLVEHMGGTIGVDSEEGKGSTFWFT 843

Query: 788 IPSK 791
           +P K
Sbjct: 844 LPYK 847


>gi|331268507|ref|YP_004394999.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329125057|gb|AEB75002.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 554

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/524 (18%), Positives = 220/524 (41%), Gaps = 33/524 (6%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           ++I V+    V++ +    E   NL      A+  F++++ + F N   ++L +      
Sbjct: 1   MSISVNDFQHVDEFIHEDEEFYRNLIKILPDAVF-FEKDKKIIFANDEGIKLLD---GIE 56

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVT 405
             +    E+ EF+ S       LN +   +N+ SV   +E   +   +  N + + V V 
Sbjct: 57  KKDIIGKEVEEFIHSNFIKILDLNKE---KNLNSVKSHNENIIEQKIVTLNNKIIDVEVK 113

Query: 406 S------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           S      N     + +  ++T +   E        +  +    L  GV +   D  ++ +
Sbjct: 114 SIYLFNKNREQIKVVIVRDITERKRYEKALRDSEYLHRKLTQMLPVGVFIHDYD-IVEFA 172

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTL 518
           N    ++   ++ +      I           ++     +F     +  +   K ++   
Sbjct: 173 NKTCLNILGIKDEKDLLNKSIFKFIHKGKIRDSKQRLKTIFEYGEKTLPEFYNKVVRQNG 232

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA------LRKADEIKNSF 572
           E++       +       + +  F +VT+ +  E    + NE        R+ ++I+  F
Sbjct: 233 EIIDVETWSTTFYDENKLKILSVFRDVTEYLEIENIKQKSNENKKLLDKEREFNKIRTEF 292

Query: 573 VQHVSYELRSPLTNIIGFTDLL----KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDI 627
             ++S+EL++PL  I+    LL    +  +   ++  K  ++++ +  +S  LL L++++
Sbjct: 293 FANLSHELKTPLNVILSSQQLLALYLRNGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNL 352

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           +D+  +D+G   LN     +  ++ ++  S+   +   +I++   +D +    + D  ++
Sbjct: 353 IDITRIDSGFFSLNLQNHNIVTIIEDITLSVVEYIKNKDIKLIFDTDIEEKLTLCDEDKI 412

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            +I   +LSNA+ F+ KG  + +    D      +V++NG  IP+D    +F+RF     
Sbjct: 413 ERIILNLLSNAVKFTPKGGRIKVNIHDDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDT 472

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              R   G G+GLS+V++ + +H G +S+ S     +      P
Sbjct: 473 SFTRISEGSGIGLSLVKALVEMHNGTISVESEYGEGSEFIIYFP 516


>gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/525 (18%), Positives = 210/525 (40%), Gaps = 40/525 (7%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
            A  A        + +        +    + +A+   +  +   N +  ++       LA
Sbjct: 302 AAAQARGRRDRHRLANSEATFRLAMERSALGMALVTIDGRILRSNPALQQMLGYGADELA 361

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
              +        R      +     +  + + S      + +  +   +G  + V +++ 
Sbjct: 362 QMRT--------RELRHPEDPELAGSGLQQLASSEGGRYSAERCYAHRDGSKVWVQLSAA 413

Query: 408 ----PRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                RG  ++     +++T + D         +      D++   +A +  D R   +N
Sbjct: 414 LVRDERGQVLYTLMQVDDVTERRDRLAALQASERFLRFIADNVPGMLAYWDRDERCVFAN 473

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A       +  R  P   + ++        ++     + A     F+    +  G+L  
Sbjct: 474 RAHIEWLGHDPTR-PPQPRLADVIGAERYALSKPHIRAVLAGEPQQFERGHTARDGSLV- 531

Query: 521 LSDSVLEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKN 570
             D+ L+Y +  + +       +   ++T+   A+R L + N  L          +  K+
Sbjct: 532 --DAWLQY-VPDIEDGVVRGFFVQVSDITELKAAQRKLADANAELAARTRQAESANAAKS 588

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  I+G + LL+ S+   LN  Q   +  +  +S  L+ +++D+LDL
Sbjct: 589 EFLANMSHEIRTPMAAIVGLSHLLENSR---LNPDQQDLLRKMRGASKSLMAVIDDVLDL 645

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + ++AG ++++ S   L  LL++++  +A   H+  + + +  D  L      D  RL Q
Sbjct: 646 SKIEAGELRIDRSAFSLQALLDDLRGLMALSAHDRTLELVMRCDAGLPDQLDGDLMRLRQ 705

Query: 690 IFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           + + +LSNA+ F++ G     V L A +       F+V+++G  I       +F  F   
Sbjct: 706 VLNNLLSNALKFTTVGEVLLQVALVARQSGRLRLRFTVRDSGIGISAAEQARLFRPFAQV 765

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                RR  G GLGL I    + L GG +S+ S+    +  +  +
Sbjct: 766 DASTTRRYGGTGLGLVISRRLVRLMGGDISLRSAPGKGSEFSFDL 810


>gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1070

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/389 (27%), Positives = 175/389 (44%), Gaps = 30/389 (7%)

Query: 419 LTVQVDL---ETKYNTLVKVQGETIDHLSEGVAVF---GPDGRIKL-SNPAFRSLW--KT 469
           ++ Q+ L     +++ L +   E    +  G+ ++    PD  I   +NPA   L   + 
Sbjct: 551 VSEQIALAIERQRHDELSQTAEEIFHDIPSGLFIYKYREPDQLILESANPAALRLIDKRL 610

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           EE R +  T I   A   S Y       + F      ++DER                  
Sbjct: 611 EEARGTLFTDIWPRATLQSNYLRCLHTKEPFDKEAHLYEDERIR----------GYFRIH 660

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             PLP  +  + F +VT+  + ++AL    E    A+  K+ F+ ++S+E+R+PL  I+G
Sbjct: 661 AFPLPGEKVAVAFEDVTERQQVQQALVRAKEIAESANRAKSEFLANISHEVRTPLNGIMG 720

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              L   S+   +  +   Y+     SS  LL ++ND+LD   VDAG M++      L+D
Sbjct: 721 MLQLAMQSE---VPPELEDYIRTALESSRNLLRVLNDVLDFTKVDAGKMEIVDRDFSLDD 777

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           LL++          +  I + + +   +G FV D  RL QI   ++ NA+ F+  GS V 
Sbjct: 778 LLSQAVNFFRALAMDKKISLVLSAPRDIGRFVGDEGRLRQILFNLMGNALKFTDTGS-VT 836

Query: 710 LKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           L+A       D    +F+V++ G  IP D    VF  F         + +G GLGL IV+
Sbjct: 837 LEAWPVGEQGDATRILFAVRDEGIGIPTDKLGYVFESFTQVDGTYSRRYQGTGLGLPIVK 896

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + L GG++S+ S +   TTI   +P +
Sbjct: 897 RLVTLMGGNISVESMEGEGTTIFFVLPLR 925



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 93/341 (27%), Gaps = 33/341 (9%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS-----SALEKNFCET 265
            +G   W++  Y +           ++    +L     + R +       +   +   E 
Sbjct: 31  SSGATFWSDEQY-RLLGFSPDETLPSLDRFLELLDPRDRDRFLRKVGVCFTKRRELRTEV 89

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAI------DVSKEITVNDQLTH----TYEILHNL 315
             T + G  ++ +I           I +      DV++   V   L         I  N 
Sbjct: 90  RYTPKSGKLRTAQIRAEFEPDESGRIRVISGTFQDVTERRAVQSALRQSEAGYRTIFENA 149

Query: 316 TVAIAIFDQNRYLQFHNRSFVEL--WEIDLAFLATNPS-----NDELLEFLRSANKLPEQ 368
              I            N S  ++  ++     +A+          +  +  R    L E 
Sbjct: 150 LEGIYQSTPGGTFLSVNASMAKILRYDDPADLMASIKDIGHDLYADPCDRKRYMELLEEH 209

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
           +    ++  +       +     W   N   +     + P    I   E+++ +   E  
Sbjct: 210 IRVMGFETQVRR-----KDGSLIWVTLNSTLIRDAGANRP--CLIGTMEDISTRKRFELS 262

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                +     +  +S          RI  SNP    L    E  L+             
Sbjct: 263 LIESDQRFRNLLQQISCIAVSLDNQSRIVFSNPFLHQLTGWSEAELNGQNWFDVFLPAGQ 322

Query: 489 RYYNESDGWDLFAAII---TSFDDERKSLQGTLELLSDSVL 526
           R            A      S D E ++ QG L L+  + +
Sbjct: 323 RETMSRVLTPHPTAATHGSESMDTEIRTRQGALRLIRWNTV 363



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 57/205 (27%), Gaps = 15/205 (7%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           RI  + G + ++ E       L    + ++ +F++    ++     G  L  N S  K  
Sbjct: 114 RIRVISGTFQDVTERRAVQSALRQSEAGYRTIFENALEGIYQSTPGGTFLSVNASMAKIL 173

Query: 227 ETEGIV--FQKAIGESRKLFKEEIKKRMISSSALEKNFC---ETVSTLEHGNNKSYKIVR 281
             +               L+ +   ++       E       ET    + G+     +  
Sbjct: 174 RYDDPADLMASIKDIGHDLYADPCDRKRYMELLEEHIRVMGFETQVRRKDGSLIWVTLNS 233

Query: 282 VLNSFGEA------GIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFH 331
            L     A      G   D+S        L         +L  ++      D    + F 
Sbjct: 234 TLIRDAGANRPCLIGTMEDISTRKRFELSLIESDQRFRNLLQQISCIAVSLDNQSRIVFS 293

Query: 332 NRSFVELWEIDLAFLATNPSNDELL 356
           N    +L     A L      D  L
Sbjct: 294 NPFLHQLTGWSEAELNGQNWFDVFL 318


>gi|120435203|ref|YP_860889.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
 gi|117577353|emb|CAL65822.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
          Length = 1202

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 129/749 (17%), Positives = 275/749 (36%), Gaps = 88/749 (11%)

Query: 104 DIPQTDTDLLSFE------NWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG 157
           ++ Q    LLS         W +       ++A EK    G  FD   +       +I  
Sbjct: 187 EVSQDYQPLLSEGINFYSEGWSRNKITKLFNEALEK----GIPFDAELKIVTAKNNEIWV 242

Query: 158 RVSGSCAF-----LR----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
           R  G   F     +R       ++       +   +  K             ++      
Sbjct: 243 RSFGKPEFKDGKCIRIYGAFQDINTEKR--IQLEYERTKEQYETIFKNSAVGNI-----L 295

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGES------RKLFKEEI--KKRMISSSALEK 260
              +G +L  N +  K    E    ++ +G +           + I  + +++S    + 
Sbjct: 296 VKTSGQLLQVNPATLKIFGFEDAKREEVMGLTFKDLIHPDFLDQSITYRSKLLSGELDQY 355

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI------DVSKEITVN----DQLTHTYE 310
            F E     ++G          +    + G ++      D++++  +     +       
Sbjct: 356 QF-EAKYYKKNGEIVWCHSNSSIIRSNDYGESLIITQIEDITEKKELEFKANENAKRFKT 414

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
                 + + +       Q  N++   ++           S++  L       K    L 
Sbjct: 415 AFEYSPIGMGVVSPEGIWQMVNQNLAGIFGYTKEEFVNKKSSE--LTHAEDLRKDSNMLK 472

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQT----LHVIVTSNPRGGTIWMF---ENLTVQV 423
               K+      +    H+      +G+T    L V   S+  G T+++     +LT ++
Sbjct: 473 SLLEKKIESYSIEKRFIHQ------SGKTIYGLLSVSAVSDDEGNTLYLIGQVSDLTKRI 526

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             E      +      +D  ++  +     DG +   N    +L     + +    +++N
Sbjct: 527 TSEKALEKSLNELESLMDATTQVSIIQTDLDGIVAKFNKGAENLLGYSADEVKGVFNVKN 586

Query: 483 IAATCS----------RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +               +Y  E  G+ +F    +    + K      +  +   ++  + P
Sbjct: 587 LHEDHEIELRATELSEKYNQEIKGFGVFTFQASRGHYDSKEWTYIRKDGTKFTVQLIVTP 646

Query: 533 LPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           + +    +T       ++T   + E +L +  +    A + K+ F+ ++S+E+R+PL  I
Sbjct: 647 ITDHNGKITGYLGVGSDITQLKKMEVSLIKAKKKAEAASKSKSEFLANMSHEIRTPLNGI 706

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGFTDLL  S+   L + Q +Y++ I  S+  L++++ND+LD + ++AG ++L+     L
Sbjct: 707 IGFTDLLMRSE---LENSQQKYMQTIYNSAISLMDIINDVLDFSKIEAGKLELSEERTDL 763

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            +L ++    +  + H+  + + +    KL     AD  RL QI + +L N++ F+ +G 
Sbjct: 764 IELCDQTIDIVKHQAHKKGLEVLLNISPKLRRYVYADAVRLRQILTNLLGNSVKFTHEGE 823

Query: 707 TV------ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
                    +        FIFS+++ G  I     K +F+ F        R   G GLGL
Sbjct: 824 IELNISSKTISGNEHELLFIFSIRDTGIGIAPQNLKKIFSAFDQEDASTTRKYGGSGLGL 883

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR 787
           +I    +NL    + ++S     +T + +
Sbjct: 884 TISNKLLNLMDSKLELTSVLNEGSTFSFK 912


>gi|83777315|gb|ABC46993.1| PAS/PAC domain-containing protein [Arthrospira platensis Ap-s]
          Length = 607

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/554 (19%), Positives = 223/554 (40%), Gaps = 103/554 (18%)

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           + + + ++ ++W+     L  NPS   +       N + E LN +  +   F+     ET
Sbjct: 1   MLYVSPAYEQIWQQSRDSLYKNPSLWLMCVHPEDRNAMTEALNKQISQGIAFN-----ET 55

Query: 388 HKDTWHLPNGQTLHVIVTSNP---RGGTIWMF----ENLTVQVDLE-------------- 426
           ++     P+G    +   + P   + G I+ +    E++T + ++E              
Sbjct: 56  YRIV--RPDGSIRWIESRAFPVRDKQGNIYRYTGIAEDITHRKNIENALQNQLQKTLIIQ 113

Query: 427 ---TKYNTLVKVQG---ETIDHLSEGV--------------------------------- 447
               K    + VQ      ++ + +                                   
Sbjct: 114 KITEKIRQSLDVQEIFTTAVEQIGKAFKVNCCLIHTYQKYPLPHGALVAKYSQHPCHLLG 173

Query: 448 -----AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS--RYYNESDGWDLF 500
                  F  D  I+      R++   + + L   + +   +       Y+ ES+     
Sbjct: 174 DLKEAVAFDNDPYIEYIVEQDRAISCHKNDCLIKLSELNMASPFLQTHEYFEESENLKSM 233

Query: 501 AAIIT-------------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVT 546
            AI T               D +R      +EL+ +++     I + +AQ +        
Sbjct: 234 LAIATFYHGQPNGIISLHQCDHKRVWTVDEMELI-EAIARQLGIAIAHAQLLSQEKEQRQ 292

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +       L +  E  + A+  K+ F+ ++S+E+R+P+  ++GF DLL+++     + + 
Sbjct: 293 ELTYKNIRLKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQSTI---TDPQA 349

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S Y++ I++S   LL L+NDILDL+ ++AG ++L+Y  + +  ++NE++     K  E N
Sbjct: 350 SSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEHIFEQKAKEKN 409

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------RDNG 717
           I ++V    ++  S + D  RL QI   I+ N++ F+  GS  I+ +          ++ 
Sbjct: 410 IELQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASCSQLKPNHPYNSI 469

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +   ++ + G  I  +  + +F+ F  +      +  G GLGL+I E  ++L GG + + 
Sbjct: 470 NLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLE 529

Query: 776 SSDEGVTTINCRIP 789
           S     +T     P
Sbjct: 530 SQINQGSTFTFDFP 543


>gi|281355007|ref|ZP_06241501.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317887|gb|EFB01907.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1560

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 127/790 (16%), Positives = 270/790 (34%), Gaps = 125/790 (15%)

Query: 96   IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE---------GQSFDLV-- 144
             G   +R   P    +      W+   +  +  +   +LR              F     
Sbjct: 652  SGFWPKRDGKPVPAKE------WILPEYLEEFEEGWRRLRSGEVETLNLLYAAGFSGEKR 705

Query: 145  -AETQNDCAI-KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
              E + + ++ +I GR              GI   + E      +  + + + + + D+L
Sbjct: 706  YFELRMERSVNEISGR----------REFCGIIQVVTEARENDLRCRDSLKLLESIRDNL 755

Query: 203  DFLVWHRDQAG--DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL-- 258
               ++ ++       L  N  +++ T          I        E    +         
Sbjct: 756  PGYLFVKEADNEFRYLMCNHGFEELTGMSSAQILGKIDPEVFPMDEAAAAKFRDDDVRLV 815

Query: 259  ---EKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVS-----KEITVN--- 302
                +   +  +T   G     +     I R   +    G+ ID+S     ++       
Sbjct: 816  ESGGQMDMQEFATNAQGRRLIVRTIKNVITRSDGTRLLIGMGIDISRQYHLEQEQKRTIN 875

Query: 303  --DQLTHTYEILHNLTVAIAI---FDQN----RYLQFHNRSFVELWEI---DLAFLATNP 350
              +   ++  I++     I +   FD+       +   N      +     D      + 
Sbjct: 876  TLNDYVNSERIINQSLTRITLEEDFDRAVNGILRIIGENAGADRCYIFRYTDAELTRCSN 935

Query: 351  SNDELLEFLRSANKLPEQLN---WKTW-----------------------KENIFSVYKS 384
              + + + +  A  + + ++   +  W                       +E  F  ++ 
Sbjct: 936  EYEWVRDGVEPAIDMLQNVDMTRFSAWTAELAAGRDIVVPDMTEPPEKLSREVKFLEFQH 995

Query: 385  SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL-------------TVQVDLETKYNT 431
              +   T    +G+    +     R    +   ++               +     +   
Sbjct: 996  IRSLLVTGIQCDGKLYGYVGLDFVRERKEFSDCDIHTVHSIVNLFLLAQERFRQLERIAD 1055

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             V +Q + ++ ++  + +  P+ RI  +NP+           L+       +        
Sbjct: 1056 SVALQRQIVESITIPITIVDPEYRIISANPSVSRECGRTPAELAGTKCYETVCRNPEPPP 1115

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVT 546
                   L        ++E          L++  +  +  PL + Q      + + +++T
Sbjct: 1116 WCPVRLTLLDGQEHRTENE----------LNNRRIISTAQPLLDRQGKLMYVLTSDIDIT 1165

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +  R ++ L +  E  + AD  K+ F+  VS+ELR+PL  +IGF++LL+   + +  ++Q
Sbjct: 1166 ELSRQKQELQKAMEQAQAADRAKSYFLATVSHELRTPLNAVIGFSELLQGGDVAA--AEQ 1223

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +Y+  IS +   LLNL+ D+LDL+ ++A  + L  +      L+ EV      K  E +
Sbjct: 1224 LEYLRSISFAGNALLNLIYDVLDLSKLEADQLNLVLADTDAGQLVQEVVAVFRLKAMEKD 1283

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIF 721
            +++ V           D  RL Q+   ++ NA+ F+S GS  +    +     + G  I 
Sbjct: 1284 LKLTVECVNLEQPLRLDNLRLRQVVLNLVGNAVKFTSAGSVSVRAVFQPDPGGETGMLII 1343

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  I  +  K +F+ FV            G GLGL+I +  +N  GG + + S  
Sbjct: 1344 RVADTGPGISPESRKKIFDPFVQGESTRGTHSYEGSGLGLAISQRLVNRMGGEIRLESEL 1403

Query: 779  EGVTTINCRI 788
               +    RI
Sbjct: 1404 GSGSVFTVRI 1413



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 64/202 (31%), Gaps = 30/202 (14%)

Query: 297 KEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +    Q     E+L  NL + IA+ D+   + +                  +  +D  
Sbjct: 364 AAVLFRRQAQRKMEVLFRNLPMRIAVVDEEERVLYA-----------------HIPDDAA 406

Query: 356 LEFLRSANKLPEQLN--WKTWKENIFSVYKSSE-------THKDTWHLPNGQTLHVIVTS 406
            +F     +L +  +   + +   +   +++ E        H+   H      L      
Sbjct: 407 GDFSGGFERLEQLPDESREQFVAAVVRTFRTGERCGVDYTAHRRARHAE--FVLLPRRNP 464

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 +W+  ++T   +   +     +    T++ + +GV V  P  R+ L NP    L
Sbjct: 465 FHTNAVMWISGDMTELHEAHLEVAQTAERFRLTLEAIGDGVIVTDPGLRVTLVNPVAAEL 524

Query: 467 WKTEENRLSPGTHIRNIAATCS 488
                   + G  +  I    S
Sbjct: 525 TGYSAED-ASGRKLEEIFDIVS 545



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 86/273 (31%), Gaps = 36/273 (13%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           LA    + +       +F+ L       +   D+   +L     Y    +     F    
Sbjct: 363 LAAVLFRRQAQRKMEVLFRNL----PMRIAVVDEEERVL-----YAHIPDDAAGDFSGGF 413

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-------GEAG 290
            E  +   +E +++ +++        E        + ++     VL              
Sbjct: 414 -ERLEQLPDESREQFVAAVVRTFRTGERCGVDYTAHRRARHAEFVLLPRRNPFHTNAVMW 472

Query: 291 IAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           I+ D+++    + ++  T E     L  +   + + D    +   N    EL        
Sbjct: 473 ISGDMTELHEAHLEVAQTAERFRLTLEAIGDGVIVTDPGLRVTLVNPVAAELTGYSAED- 531

Query: 347 ATNPSNDELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           A+    +E+ +       +K+   L      +++ ++   ++         +G   H+  
Sbjct: 532 ASGRKLEEIFDIVSYLDGSKVESPLKKALATDSVVALANHTDLIA-----RDGMRRHIAD 586

Query: 405 TSNPRG-------GTIWMFENLTVQVDLETKYN 430
           ++ P         G + +F ++T + +   +  
Sbjct: 587 SAAPIRDAAGRITGGVLVFRDVTEEYEKRDRLR 619



 Score = 41.5 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 105/346 (30%), Gaps = 44/346 (12%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           L     + L+  T+ + ++G                  GR++G     R ++ +    + 
Sbjct: 560 LATDSVVALANHTDLIARDGMRRH--IADSAAPIRDAAGRITGGVLVFRDVTEEYEKRDR 617

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
                   K +  ++ F           +  ++       +  + K         +  + 
Sbjct: 618 LRLNGVILKNAAKLAKFIYFCCDEQQTFFVSEED------SGFWPKRDGKPVPAKEWILP 671

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------IVRVLNSFGEAGIA 292
           E  + F+E  ++     S   +      +    G  + ++      +  +       GI 
Sbjct: 672 EYLEEFEEGWRR---LRSGEVETLNLLYAAGFSGEKRYFELRMERSVNEISGRREFCGII 728

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIF------DQNRYLQFHNRSFVELWEIDLAFL 346
             V++    + +   + ++L ++   +  +      D        N  F EL  +  A +
Sbjct: 729 QVVTEARENDLRCRDSLKLLESIRDNLPGYLFVKEADNEFRYLMCNHGFEELTGMSSAQI 788

Query: 347 ATN------PSNDELLEFLRSAN-KLPE---QLNWKTWKENIFSVYKSSETHKDTWHLPN 396
                    P ++      R  + +L E   Q++ + +  N         T K+     +
Sbjct: 789 LGKIDPEVFPMDEAAAAKFRDDDVRLVESGGQMDMQEFATNAQGRRLIVRTIKNVITRSD 848

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           G  L            I M  +++ Q  LE +    +    + ++ 
Sbjct: 849 GTRL-----------LIGMGIDISRQYHLEQEQKRTINTLNDYVNS 883


>gi|253563504|ref|ZP_04840961.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947280|gb|EES87562.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 635

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/506 (19%), Positives = 203/506 (40%), Gaps = 24/506 (4%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D      + D       +L    +A   +D           +  +  +  A +      +
Sbjct: 10  DTGDLENLKDNYQKITSVLAGHQIAFWEYDIPTGECNFTDEYFHILGLKEAGIIFR-DIN 68

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFS----VYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           +   F    + +  Q  +    E+       V +      +T  L +    +     N  
Sbjct: 69  DFYRFAHPEDVISYQTTFARMLESETKISQIVVRCVGRQGETIWLEDNFIAYKKNKENGS 128

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              I    N+T + + E +   L +   + I+ L E          I + +  F      
Sbjct: 129 DKIIAYTANITSRCEKEVQIRQLEERNRKIIEALPE---------FIFIFDDNFFITDVL 179

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLSDS-VL 526
                     +  +     R    S+  DLF + I       + K ++  +++ +     
Sbjct: 180 MAPDTELLHPVEVLTGADGRSIYSSEVSDLFISSIHECLKSGKLKEIEYPVDVEAGRHFF 239

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +  I P    + +    ++ D +R  + L E  +   +AD +K+ F+ ++S+E+R+PL  
Sbjct: 240 QARIAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNA 299

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++     
Sbjct: 300 IVGFSEIIA---LTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTE 356

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++ L++EV +    KM +  +++ VI   +      DR R+ Q+    LSNA+  + +GS
Sbjct: 357 MSGLVDEVDKVHRLKM-KKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS 415

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            +     ++       V + G  I ++    +F RF       Q  G GLGL I +S + 
Sbjct: 416 -ITFGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPICKSIVE 472

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
             GG + + S     +T    +P+++
Sbjct: 473 RLGGRIEVESELGQGSTFILYLPNRQ 498


>gi|110798905|ref|YP_695966.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|110673552|gb|ABG82539.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
          Length = 787

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 166/381 (43%), Gaps = 9/381 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    ++T +  +E       +      +++ + +     +G+I   N A   +    E 
Sbjct: 378 VLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEE 437

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L    +   +    +    +S  ++    +       +K L   LE +S  + +     
Sbjct: 438 ELIGKNYYDLLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQ-LESISSRIKDNK--- 493

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N    +      + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     
Sbjct: 494 -NNTLGWVRVARNIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQ 552

Query: 593 LLKTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           LL TSK    N  +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L
Sbjct: 553 LLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKL 612

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             ++  S+   +   NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +
Sbjct: 613 TEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEV 672

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
               D       VK+ G  IP  M + +F RF+ N       + G G+GLS+V+S + LH
Sbjct: 673 SIFADETWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELH 732

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G V +  S+E  +  +  +P
Sbjct: 733 EGKVFLRESNESGSEFSILLP 753


>gi|182626605|ref|ZP_02954351.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|177908085|gb|EDT70658.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 821

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 166/381 (43%), Gaps = 9/381 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    ++T +  +E       +      +++ + +     +G+I   N A   +    E 
Sbjct: 412 VLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEE 471

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L    +   +    +    +S  ++    +       +K L   LE +S  + +     
Sbjct: 472 ELIGKNYYDLLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQ-LESISSRIKDNK--- 527

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N    +      + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     
Sbjct: 528 -NNTLGWVRVARNIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQ 586

Query: 593 LLKTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           LL TSK    N  +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L
Sbjct: 587 LLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKL 646

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             ++  S+   +   NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +
Sbjct: 647 TEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEV 706

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
               D       VK+ G  IP  M + +F RF+ N       + G G+GLS+V+S + LH
Sbjct: 707 SIFADETWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELH 766

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G V +  S+E  +  +  +P
Sbjct: 767 EGKVFLRESNESGSEFSILLP 787


>gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 352

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 157/384 (40%), Gaps = 56/384 (14%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-- 479
           +   E  +    K+    +  L +GV     DG + L+N A   ++K     L       
Sbjct: 5   EKTGEETFRERNKM-KAILTTLVDGVMAVSRDGIVTLANKAAEEIFKARHEGLVGRPFAS 63

Query: 480 ----------IRNIAATCSRYYNESDGWD-LFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                     + ++  T  + + E+     LF   + + + E+  ++G + +  D     
Sbjct: 64  LVSSQELNQMLEDVFETGRQIFTETALEQCLFRVQMAAINGEKGDVEGAVVVFHDVT--- 120

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                                             RK D++++ FV +VS+ELR+PLT I 
Sbjct: 121 --------------------------------DARKFDQMRSEFVANVSHELRTPLTAIK 148

Query: 589 GFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           GF + L     G+L  K    +++  I   +  L  L++D+L L+ +++   KL    + 
Sbjct: 149 GFVETLLD---GALEDKLICRRFLTIIEGENNRLTRLIDDLLTLSAIESRERKLTLKPVC 205

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L   + +V   +  +  E  + +++I +  L    AD   + Q+   ++ NA+ ++S G 
Sbjct: 206 LVTSIIQVMNILGPQAREKRLHLELIFNRDLPPVKADEDLVGQVLINLIDNAIKYTSPGG 265

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            ++++  R       S+ + G+ IP++    +F RF        R   G GLGL+IV+  
Sbjct: 266 KIVIRVKRGGDQVFTSITDTGTGIPQESLPRLFERFYRVDKARSRELGGTGLGLAIVKHI 325

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           +  HGG V + S     +T    +
Sbjct: 326 VESHGGEVFVESELGKGSTFGFSL 349


>gi|309389652|gb|ADO77532.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 608

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 171/396 (43%), Gaps = 30/396 (7%)

Query: 401 HVIVTSNPRGGTIW--MFENLTVQVDLET----KYNTLVKVQGETIDHLSEGVAVFGPDG 454
           HV V S    G++     E ++   + E     K     +     +++L+  + V   D 
Sbjct: 226 HVEVASEDEIGSLANEFNEMISKLKEYEKINIKKLLMEKEKSEAVVNNLNNPLIVTDHDH 285

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +I L N   + L+   ++ ++              ++ E    +     I + +++ K++
Sbjct: 286 KIVLINEVAKKLFSLNKDIINT-------------HFLEVIQAEEIFEYIKNPEEKEKNI 332

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
               +   +     S   + +           +  +    L E    L++ D +K+ FV 
Sbjct: 333 FNFTKDGKEKHYRISTNKVVDED---------EEYQFTVTLLEDITNLKEIDNMKSEFVS 383

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            VS+E R+PLT++     ++     G LN +Q + +E        L  LVND+LDL+ ++
Sbjct: 384 TVSHEFRTPLTSMNMGLSMVINEDTGKLNEEQRELLEAAYEDVERLTGLVNDLLDLSKIE 443

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +G +++ +  + +N+++ +       +  E  I +            AD  ++  + S +
Sbjct: 444 SGRIEMEFDKVNINEIVEKTLDPFYKQAKEKEIALNFNKQENNIFAWADPTKVSWVISNL 503

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRG 753
           + NA+ ++  G  + +KA       + SV ++G  IP++    +F++FV   + + ++ G
Sbjct: 504 IGNALRYADNGE-IEIKAEVKGRRVLVSVTDDGPGIPKEYQSKIFDKFVRAGNDKNEKSG 562

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I +  I  H G + + S +   +T +  IP
Sbjct: 563 TGLGLAISKEIITAHNGRIWVESEEGNGSTFSFYIP 598


>gi|225017309|ref|ZP_03706501.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
 gi|224949926|gb|EEG31135.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
          Length = 586

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 157/368 (42%), Gaps = 25/368 (6%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +           ++ ++EGV       R+ L+NPA   ++   E +   G +I  +    
Sbjct: 229 QLEEQNVKLSSMLNSMTEGVVAVDTKFRLILTNPAAHEMFGLPEPKGLIGKNIYGL---- 284

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQTMLTFVNV 545
                  + + L   +  S     + L+  +   S  +L  +  P      +       V
Sbjct: 285 ---MRNEEFYLLLEEVAESGRSRSRELEWQVPGGS-RMLRLNAAPFFRQGGEPYGVLFVV 340

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D  +  R            ++++  FV +VS+EL++PLT+IIGF D LK   +   ++ 
Sbjct: 341 EDVTQIRRL-----------EQMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAMEDADT- 388

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              +++ IS  S  L  L+ DIL L+++++    +N S + L ++  +V Q +  K  + 
Sbjct: 389 ARHFLDIISIESGRLYRLLQDILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDK 448

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +  ++  +  L  F  +R R+ Q+   I+ NA+ ++  GS +     +   +    V +
Sbjct: 449 QLAFEIRVEDNLPPFACNRDRISQMLINIIENAVKYTEHGSVIT-TIEKRGDNLKICVSD 507

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP D    VF RF            G GLGLSIV+  + L+ G VS+SS     + 
Sbjct: 508 TGIGIPADQLDRVFERFYRVDKGRSRSMGGTGLGLSIVKHIVLLYQGSVSVSSEVGKGSE 567

Query: 784 INCRIPSK 791
               +P +
Sbjct: 568 FTIFLPYR 575



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 81/274 (29%), Gaps = 22/274 (8%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + +Q      +L+++T  +   D    L   N +  E++ +         +   L+   
Sbjct: 229 QLEEQNVKLSSMLNSMTEGVVAVDTKFRLILTNPAAHEMFGLPEPKGLIGKNIYGLMR-- 286

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-QTLHVIVTSNPRG-----GTI 413
                      +    E +    +S  + +  W +P G + L +      R      G +
Sbjct: 287 --------NEEFYLLLEEVAESGRS-RSRELEWQVPGGSRMLRLNAAPFFRQGGEPYGVL 337

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           ++ E++T    LE      V      +      +  F    +      A  +    +   
Sbjct: 338 FVVEDVTQIRRLEQMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAMEDADTARHFLDIIS 397

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +  G   R +    +    ES   D+  + +   +  R+  Q       D  L + I   
Sbjct: 398 IESGRLYRLLQDILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDKQLAFEIRVE 457

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            N           +  R  + L    E   K  E
Sbjct: 458 DN-----LPPFACNRDRISQMLINIIENAVKYTE 486


>gi|258592849|emb|CBE69158.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 731

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 119/260 (45%), Gaps = 23/260 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L   N  L  A   K +F+ ++S+ELR+PL  I+GF+DLL     G L +KQ++Y  +
Sbjct: 459 RELQIANGHLADASRHKTAFLTNMSHELRTPLNAILGFSDLLCDQTFGPLTAKQARYANH 518

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L+ND+LDL+ V+AG + L      L++ L      I        + I   
Sbjct: 519 IQTSGRHLLALINDLLDLSKVEAGKLTLRLEPFDLSEALTVAVYEIQPVADAKRLTIVPD 578

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------------------- 713
            D    +  AD  R  QI   +LSNA+ F+ +G T+ + A+                   
Sbjct: 579 IDTAPITLTADPVRFKQIIYNLLSNAVKFTPEGGTIRVSASLGRRESGVEAPPHPIPTTL 638

Query: 714 -RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGG 770
                    +V + G  I  +    +F RF         Q +G GLGL++ +  + LHGG
Sbjct: 639 HHSGDFVEIAVTDTGIGIAAEDLSRLFTRFTQLEIETTKQFQGSGLGLALTKQLVELHGG 698

Query: 771 HVSISSS-DEGVTTINCRIP 789
            ++++S+     +    R+P
Sbjct: 699 TITVTSAGPGQGSRCTVRLP 718


>gi|150402473|ref|YP_001329767.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033503|gb|ABR65616.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 639

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 123/242 (50%), Gaps = 4/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L      L++ D +K+  +  VS+ELR+PLT+I G+ +L+    +G++N  Q + 
Sbjct: 394 KHAEELKASYNELKELDNLKSELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKC 453

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++    +   L  L+  +LDL+ ++ G +++    + L  ++ +V + +     E NI++
Sbjct: 454 LQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVIEYLKPLATEKNIKL 513

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +    +  AD+ R+ Q+ + ++ NA+ FS    ++++    ++      V ++G+ 
Sbjct: 514 NREVEE--ITIEADKDRITQVLTNLIENAIKFSPANESIMISGVLEDEHVHLKVTDHGAG 571

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP+   + VFNRF       +R   G GLGL++ +S +  H G + + S     +T +  
Sbjct: 572 IPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIL 631

Query: 788 IP 789
           +P
Sbjct: 632 LP 633


>gi|23099619|ref|NP_693085.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22777849|dbj|BAC14120.1| two-component sensor histidine kinase involved in phosphate
           regulation [Oceanobacillus iheyensis HTE831]
          Length = 453

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 157/369 (42%), Gaps = 23/369 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++  +     +     +D++  G+ +    G + + N  F  ++  EE+    G    ++
Sbjct: 106 EIAIQEQMQSEQLTTIVDNMQSGLVLIDEKGYVHVVNRKFLEMFGEEESN-YRGHLYYDV 164

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               + +      +     +  SF           E L+   +E    P+ N + ML   
Sbjct: 165 FENENVHETVQKTFLYEETVKKSFVHR--------EGLNKIYVEVVGAPIFNERNMLKGA 216

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +      E         L+K ++++  FV +VS+ELR+P+T+I GF + L  + +   +
Sbjct: 217 VLVLYDITE---------LKKLEKMRKDFVANVSHELRTPITSIRGFAETLLDNNI--TD 265

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               +++E I   S  L  L+ D+L L+ ++    +L      +  ++ E+   +  K  
Sbjct: 266 PATKEFMEIIYKESHRLQLLIEDLLALSRLEREDFRLLIDNYDVRQMVEEILPQLHQKAE 325

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             N+   +    +L +  AD+ R+ Q+   ++ N++ ++  G  + L  + +     F V
Sbjct: 326 NKNLTFDLEVPDQL-TMRADKDRMKQVLINLIDNSIHYTPSGGDICLAISEETDVIHFQV 384

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K++G  + E     VF RF            G GLGL+IV+  + +H G + + S+    
Sbjct: 385 KDSGIGMDEKSQTRVFERFYRVDKARSRNTGGTGLGLAIVKHIVEVHKGKIDVESTLNQG 444

Query: 782 TTINCRIPS 790
           TTI+  IP 
Sbjct: 445 TTIHIYIPK 453



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 19/144 (13%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A ++S+       Q      I+ N+   + + D+  Y+   NR F+E++  + +     
Sbjct: 100 LARNMSEIAIQEQMQSEQLTTIVDNMQSGLVLIDEKGYVHVVNRKFLEMFGEEES----- 154

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIF-SVYKSSETHKDTWHLPNGQTLHVIVTS-- 406
                    L       E ++    K  ++    K S  H++     N   + V+     
Sbjct: 155 ----NYRGHLYYDVFENENVHETVQKTFLYEETVKKSFVHREGL---NKIYVEVVGAPIF 207

Query: 407 ---NPRGGTIWMFENLTVQVDLET 427
              N   G + +  ++T    LE 
Sbjct: 208 NERNMLKGAVLVLYDITELKKLEK 231


>gi|311070583|ref|YP_003975506.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310871100|gb|ADP34575.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 611

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 163/416 (39%), Gaps = 32/416 (7%)

Query: 385 SETHKDTWHLPNGQTLH-VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETID 441
           S+  +    L  G     V    +   G +   F +LT ++ D +       +     I 
Sbjct: 211 SDMRRQAMELAKGNFSRKVRKYGHDEIGQLATTFNHLTRELEDAQAMTEGERRKLSSVIA 270

Query: 442 HLSEGVAVFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           ++++GV     +G I L N PA   L  + E  L     I ++      +  E       
Sbjct: 271 YMTDGVIATNRNGAIILLNSPALELLNVSRETALEM--PITSLLGIHENFTFEDLVEQQE 328

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           + ++    +E+ ++           + +S+I   + +       + D    E        
Sbjct: 329 SMLLEIEREEQTTVLR---------VNFSVIEREHGKIDGLIAVIYDVTEQE-------- 371

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              K D+ +  FV +VS+ELR+PLT +  + + L      + +    +++      +  +
Sbjct: 372 ---KIDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDI-APRFLMVTQNETERM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + LVND+L L+  D+   + N   I     ++ +         E ++        +    
Sbjct: 428 IRLVNDLLQLSKFDSKDYQFNREWIHFIRFISLIIDRFE-MTKEQHVEFIRQLPDRSLYV 486

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             D+ ++ Q+   I+SNA+ +S +G  V   +    +      SVK+ G  IP+   + +
Sbjct: 487 EIDQDKITQVLDNIISNALKYSPEGGHVTFSVNVNEEEELLYISVKDEGIGIPKKDMEKI 546

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F RF        R   G GLGL+I +  +  HGG +   S +   TT+   +P KE
Sbjct: 547 FERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLPYKE 602


>gi|291568305|dbj|BAI90577.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 358

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 151/298 (50%), Gaps = 10/298 (3%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           I   D  R   Q  ++L      + +I    +         + +  +A++ LT++NE L 
Sbjct: 44  IHQCDGPRHWEQSDIDLAQQFSFQLAIAIQQSNLFEQLQQELRERQQAQQQLTQRNEELI 103

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A  +K+ F+ ++S+ELR+PL  I+G T+ L+    G +N +Q + ++ +  S++ LL L
Sbjct: 104 RAKRLKDEFLANMSHELRTPLNAILGMTEGLQEEVFGPVNDRQLKALQTVERSASHLLAL 163

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +NDILD+A +++G ++L  S   +  L       I  +  +  I++ V    KL   + D
Sbjct: 164 INDILDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLKLPDIILD 223

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARDNGDFIFSVKNNGSSIPEDMC 735
            +R+ Q+   +L+NA+ F+ +G ++ L        +A  ++    FSV++ G  I  +  
Sbjct: 224 ERRIRQVLINLLNNAVKFTPEGGSITLEVILPQPREAEGESPYLRFSVRDTGIGISPENI 283

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           K +F  F+        Q +G GLGL++ +  + LHGG V ++S     +  +  +P +
Sbjct: 284 KKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVLLGSCFSIDLPYQ 341


>gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 456

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 147/364 (40%), Gaps = 22/364 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N         +  +  GV  F  + RI L N A R +   +   L  G HI  I   
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDNNERILLINDAARKILNIKGKDL-IGKHILEIVR- 162

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  S  +DLF  +  + +   KSL+  +      V    I+   + Q +   + + 
Sbjct: 163 ------NSKLYDLFEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIID 216

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     R            ++I+N FV +VS+ELR+PLT+I GF + L+   + +    +
Sbjct: 217 DITEMRRL-----------EKIRNEFVANVSHELRTPLTSIRGFIETLRNGAIEN-PEAR 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++ I   S  L  L+NDIL L+ ++            L++ + ++   +       N
Sbjct: 265 DKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKN 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +    +        ++ R  Q+   ++ N + ++ +G  V +    +    I  VK+N
Sbjct: 325 ITLIKDLNCPGLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVKDN 384

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F RF        R   G GLGL+IV+  +    G +S+ S     T  
Sbjct: 385 GIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEIGKGTKF 444

Query: 785 NCRI 788
             + 
Sbjct: 445 IMKF 448



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 23/227 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +ND+      IL ++   +  FD N  +   N +  ++  I    L        +LE 
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDNNERILLINDAARKILNIKGKDLIGKH----ILEI 160

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +R++        ++  K+N  S  KS E +    HL    +  +   S+   G + + ++
Sbjct: 161 VRNSKLYDL---FEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIIDD 217

Query: 419 LTVQVDLETKYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +T    LE   N  V          +  +  G      +G I+  NP  R          
Sbjct: 218 ITEMRRLEKIRNEFVANVSHELRTPLTSIR-GFIETLRNGAIE--NPEARD--------- 265

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                I   +   +R  N+         +   +  E   L   +E +
Sbjct: 266 KFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEETELDNEIEDI 312


>gi|284164195|ref|YP_003402474.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
 gi|284013850|gb|ADB59801.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
          Length = 1195

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/688 (13%), Positives = 242/688 (35%), Gaps = 50/688 (7%)

Query: 122  HHYIKLSKATEKLRKEGQS---FDLVAETQNDC----AIKIEGRVSGSCAFLRILSLDGI 174
                       ++R  G+     ++V E  +      ++          A  R++S+   
Sbjct: 540  ETVASDESPAARVRATGEPMFNQEIVLEGPDGERRWFSLNAAPVFDADGALERVVSVGEE 599

Query: 175  YSELAETTLKCKKLSNHISV-FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
             +EL     + ++  + +      +   +    +  D        N + ++         
Sbjct: 600  ITELKVQKQRLQRRKSELETELSEILGRVSDGFYALDDEFRFTHVNETAEELLGRSRAEL 659

Query: 234  QKAIGES--RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
               +      +    +++ R   +   +++      +   G     ++    +  G +  
Sbjct: 660  LGTVLWDVFPEAVGSDLEDRYREALETQQSLSFERRSRPLG--IWAQVQVYPSETGLSIY 717

Query: 292  AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
              D+S+      +LT    I+  +   I + D++      N ++ EL   D   L    +
Sbjct: 718  FRDISERKARERELTTYETIVETVEDGIYVLDEDERFTTVNETYAELTGYDREELLGAHA 777

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-----S 406
            +  + E                  + + +  +   T +      +G  + V  +     +
Sbjct: 778  STVVTESAMDR------------AQTVATDDREIPTIETELETKSGSRVPVEASVATLAA 825

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV-AVFGPDGRIKLSNPAFRS 465
                  + +  ++T + + + K     +      ++   G+ A++  + R   +      
Sbjct: 826  TDGRERVGVVRDITDRRERQRKLEASEQRYRTLAENFPNGIVALYDDELRYTAAGGQLVD 885

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                ++           I       Y +    ++      +   E +S + +        
Sbjct: 886  QLGIDQEN--------AIGQRIHDRYPDDILAEIEPHFRAALAGEERSFEVSYY---GRR 934

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            L    +P+  A  +   + V   V  ERA  E    L +++E    F    S++L+ PL 
Sbjct: 935  LSAHTLPVRTAGDVRAGMLVVQDV-TERA--EYQRKLEESNERLEQFAYAASHDLQEPLR 991

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             +  +  L++      L++   +++++    +  +  ++  +L  + V+       +  +
Sbjct: 992  MVTSYLQLIENRYADELDADGREFIDFAVDGAERMREMIEGLLAYSRVETRGDP--FEPV 1049

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SK 704
             L + L  V++ +  ++ E++  I   S   L     D  +L Q+F  +LSNA+++S  +
Sbjct: 1050 DLEETLEAVRRDLELQIEESDAEITADS---LPRVRGDPSQLRQVFQNLLSNAIEYSGPE 1106

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
               + L+A R    +  SV + G  I  +    VF  F     R +  G G+GL++ +  
Sbjct: 1107 PPRIHLEAERKGDRWRVSVTDEGIGIDPEDADRVFEIFQRLHGREEHDGTGIGLALCQRI 1166

Query: 765  INLHGGHVSISSSDEGVTTINCRIPSKE 792
            +  HGG + + S     +T +  +P+ +
Sbjct: 1167 VERHGGEIRVESEPGEGSTFSVTLPAAD 1194



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/522 (11%), Positives = 139/522 (26%), Gaps = 74/522 (14%)

Query: 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
                  L  A          + L         ++++G   GS   +R  S     S  A
Sbjct: 118 GPESVTTLECALRTADGTAVPYRLRLA-----PVRVDGEFRGSIGVVRERSESDTSSGGA 172

Query: 180 ETTLKCKKLSNH------------ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            +    +++ +                   +F+     V+  D+A ++ W N + ++   
Sbjct: 173 GSDADRERVDSEPDRETARPTETPTEAAATVFEDAAVGVFVFDEATEVAWLNAAAER--- 229

Query: 228 TEGIVFQKAIGESRKLFKEEI-----------KKRMISSSALEKNFCETVSTLEHGNN-- 274
             GI  +  +G +R+   +E            +  + ++                G+   
Sbjct: 230 YFGIDRETVLGRNRESVIDETLGDRVADPAAFRDAVTATDDGAAAERSECHVTAAGDRAE 289

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF-DQNRYLQFHNR 333
           +  +        G       +     V DQ    Y+ L  L  A+  +   +       R
Sbjct: 290 RWLEFRGRPIESGPYAGGR-IELYYDVTDQHRRAYQ-LRRLNEAVREWLASDSREAVAER 347

Query: 334 S---FVELWEIDLAFLATNPSNDELLE-------FLRSANKLP-----EQLNWKTWKENI 378
           +    V++  +++  +  +  +   L           +  ++P     E + W+ +    
Sbjct: 348 ATEQLVDILGLEINGVFLHDPDARELRPVAWSEPAAAAIGEIPTFAEGEGIAWRVFDSGR 407

Query: 379 FS----------VYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-----------TIWMFE 417
                       VY      +    LP G    VI+ S  R                  E
Sbjct: 408 AEIDDDVTADPDVYNPETPIRSEICLPIGDHGVVIIGSERRDAFDDADLSLAKVVASSLE 467

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
            +  ++  E           +        ++V   DG +  +N   R      +      
Sbjct: 468 AIFDRLRHERSLERERAQTEQLFQTAPVAISVRNADGELVRANQRARETLGAADGSPIDA 527

Query: 478 THI--RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             I  R++        ++        A      ++   L+G         L  + +   +
Sbjct: 528 ATIGGRDVRDVDETVASDESPAARVRATGEPMFNQEIVLEGPDGERRWFSLNAAPVFDAD 587

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                      +    +           + +   +  +  VS
Sbjct: 588 GALERVVSVGEEITELKVQKQRLQRRKSELETELSEILGRVS 629



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 75/256 (29%), Gaps = 22/256 (8%)

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK---RMISSSALEKNFCET 265
            D+A  +  A  ++ +    +    ++      +   E +      + ++      +   
Sbjct: 83  TDEAAQLDAARQTHSEAEGKDRADLERRDDADARRGPESVTTLECALRTADGTAVPYRLR 142

Query: 266 VSTL-EHGNNK-----SYKIVRVLNSFGEAGIAIDVSKEITV-NDQLTHTYEI------- 311
           ++ +   G  +       +      S G AG   D  +  +  + +     E        
Sbjct: 143 LAPVRVDGEFRGSIGVVRERSESDTSSGGAGSDADRERVDSEPDRETARPTETPTEAAAT 202

Query: 312 -LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
              +  V + +FD+   + + N +    + ID   +        + E L      P    
Sbjct: 203 VFEDAAVGVFVFDEATEVAWLNAAAERYFGIDRETVLGRNRESVIDETLGDRVADPAAFR 262

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWMFENLTVQVDLE 426
                 +  +  + SE H         + L             GG I ++ ++T Q    
Sbjct: 263 DAVTATDDGAAAERSECHVTAAGDRAERWLEFRGRPIESGPYAGGRIELYYDVTDQHRRA 322

Query: 427 TKYNTLVKVQGETIDH 442
            +   L +   E +  
Sbjct: 323 YQLRRLNEAVREWLAS 338



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 93/334 (27%), Gaps = 51/334 (15%)

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           +VR ++   E+  A D             T  ++  +   +   D +      + + +  
Sbjct: 6   LVRAMSERSESANATDW-AVGDDRTARQCTRALVDVVDDGVFRLDADDRFVAVDETLLST 64

Query: 339 WEIDLAFLATNP-------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
              D   L                L+  R  +   E  +    +    +  +       T
Sbjct: 65  AGCDREALLGEHVSTLLSTDEAAQLDAARQTHSEAEGKDRADLERRDDADARRGPESVTT 124

Query: 392 ----WHLPNGQTLHVIVTSNPR------GGTIWMFENLT---------------VQVDLE 426
                   +G  +   +   P        G+I +    +                +VD E
Sbjct: 125 LECALRTADGTAVPYRLRLAPVRVDGEFRGSIGVVRERSESDTSSGGAGSDADRERVDSE 184

Query: 427 TKYNTLV------KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
               T        +      +  + GV VF     +   N A    +  +   +      
Sbjct: 185 PDRETARPTETPTEAAATVFEDAAVGVFVFDEATEVAWLNAAAERYFGIDRETVLGRNRE 244

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDD----ERKSLQGTLE-LLSDSVLEYSIIPLPN 535
             I  T      +      F   +T+ DD    ER     T     ++  LE+   P+ +
Sbjct: 245 SVIDETLGDRVADPAA---FRDAVTATDDGAAAERSECHVTAAGDRAERWLEFRGRPIES 301

Query: 536 ----AQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                  +  + +VTD  R    L   NEA+R+ 
Sbjct: 302 GPYAGGRIELYYDVTDQHRRAYQLRRLNEAVREW 335


>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 833

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 160/386 (41%), Gaps = 25/386 (6%)

Query: 422 QVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           + + +    +L + +        +   GV      G     +  +R L   +      G 
Sbjct: 25  RAERDAALRSLARARRHLDLVSANAGAGVWYMDLRGGSIRLDERWRRLLGYD------GG 78

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY------SIIP 532
              +  A        +    L A +     + R  ++   +  S   LE           
Sbjct: 79  DAGDWMALVDDEGRAALQQALRAHLGGEAAELRAEIRIRAQDASWHWLEVCGNASGRGED 138

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              A+   T+ +VT+    E  L +  EA   A   K  F+ ++S+E+R+P+  IIG TD
Sbjct: 139 GRWARVEGTYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTD 198

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  S +     +Q +Y++ + +S+  LL ++NDILD + ++AG + +      L+ +++
Sbjct: 199 LLLDSTIAG---EQREYLQTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSLHSVVS 255

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  +++A +  +  + +       + S +  D  RL QI   ++ NA+ F+  G   V +
Sbjct: 256 ETCRALALRASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGEVEVRV 315

Query: 711 KAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           +  + NG      F V++ G  I  D  +++F  F    +   R   G GLGL+I     
Sbjct: 316 RCVQRNGGAASIEFLVRDTGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAICRQLT 375

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L GG + + S     +     +P +
Sbjct: 376 ELMGGRIGVDSVPGAGSRFEVTLPLR 401


>gi|304407983|ref|ZP_07389633.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343002|gb|EFM08846.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
          Length = 1091

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/449 (20%), Positives = 184/449 (40%), Gaps = 27/449 (6%)

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           S +   E ++  + LP + + +  +     V++S+  +     L  G  +   +      
Sbjct: 234 SEEHFYENIKPFSLLPTESSGRLER-YYERVWESAAPYAFEGML-GGTNVWATLEPIIED 291

Query: 411 GTIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G +        +++ +   E K     +      ++  + +     +GRI  +N  F  +
Sbjct: 292 GVVTAIIGGVVDISERKAAERKMIESEERYRSLAENPQDCILELDQEGRILFANSYFCKI 351

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                  L+   H+  +        NES          TS    R   + ++ L+   V 
Sbjct: 352 AGIGPE-LAADQHLFGLKLIV----NESQWNKHLNETATSGKKSR--FETSIVLMDGRVS 404

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           EY +        M +  ++  S+     L    +   + +  K+ F+  VS+E+R+PL  
Sbjct: 405 EYYVTLSEIKGPMESSKSMICSMHEITEL----KQADQENRAKSRFLARVSHEIRTPLNG 460

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG T L++ ++   L   Q  Y   I +SS +LL ++ DILDL+ ++AG + +      
Sbjct: 461 IIGMTQLMQHTE---LTDTQQDYAHKILSSSHLLLGIITDILDLSKIEAGKLNMEQLEFQ 517

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           +++LL E+  ++        I + + S+  L    + D  RL QI   + SNA+ F+  G
Sbjct: 518 IDELLYELTSTVGVLKGIKQIEVILESEAGLPDKVIGDPLRLKQILMNLCSNAIKFTEHG 577

Query: 706 ST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
              V ++   +        F+V++ G  + ED    ++  F    +    +  G GLGL 
Sbjct: 578 HVLVRVERVIEMNGIVRLRFTVRDTGIGMTEDQIDMLYEPFWQAEYASASKLAGTGLGLP 637

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           IV+  + L GG + + SS    +     +
Sbjct: 638 IVKELVQLLGGELQVESSPGIGSCFCFEL 666



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 24/164 (14%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLT----VAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            G  +D+S+      ++  + E   +L       I   DQ   + F N  F ++  I   
Sbjct: 298 IGGVVDISERKAAERKMIESEERYRSLAENPQDCILELDQEGRILFANSYFCKIAGIGPE 357

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHV 402
             A                 L   +N   W +++     S +  +      L +G+    
Sbjct: 358 LAADQHLFG-----------LKLIVNESQWNKHLNETATSGKKSRFETSIVLMDGRVSEY 406

Query: 403 IVTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGET 439
            VT +   G        I     +T     + +     +     
Sbjct: 407 YVTLSEIKGPMESSKSMICSMHEITELKQADQENRAKSRFLARV 450


>gi|17229771|ref|NP_486319.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131370|dbj|BAB73978.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1299

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 124/719 (17%), Positives = 237/719 (32%), Gaps = 115/719 (15%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK----- 224
           +L        +   +  +L       + L +SL   +   D    I+  N  +       
Sbjct: 149 ALADAQKLTTKLKDQKTELQTTALRLRTLIESLQSGILLEDANQHIILVNQEFCDYFRIP 208

Query: 225 --NTETEGIVFQKAIGESRKLFKEEIKKRMISSS--ALEKNFCETVSTLEHG---NNKSY 277
                 +G+  Q+A+  S+ LF E  +    +       K F      L+ G        
Sbjct: 209 LPPQALQGMDCQQALEASKHLFTEPERFICTTDEIIRQGKMFLHQEWELQDGRTLEQNYI 268

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFDQNRYLQFHNRSF 335
            IV     +G      D+++       L  + E L     A+   ++D        N   
Sbjct: 269 PIVVDHKLYGHLWKYRDITQYKKSEVALRLSEERLKLAVDAVEEGLWD-------WNLVT 321

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---- 391
            E++     F     +  E+   ++  +KL    +    ++ + S  K      +     
Sbjct: 322 GEVYRSARWFTMLGYTPMEIGNDIKFRDKLIHPDDIPLMQQRLISHLKGDTPFYEVEIRL 381

Query: 392 --------WHL---------PNGQTLHVIVTSNP-------------RGGTIWMFENLTV 421
                   W L           G+ + ++ T                +     + + +T 
Sbjct: 382 LAKSGEWRWILDRGKLVSRDSQGRAIRMVGTHLDITQRKQAEQDLQQQYQHTLLLKQITE 441

Query: 422 QVDLE-----------TKYNTLVKVQGE------------------------TIDH---- 442
           ++              T+   +++V                           T+D     
Sbjct: 442 EIRQSLQWEKILKTTVTEVQRILQVDRALIFQINSDGSGKVVQEAVMPGWSVTLDQDIYD 501

Query: 443 --LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
             L +G      DGRI      ++     +   +      +  A          + W L 
Sbjct: 502 PCLKDGYLNMYRDGRITAIADVYQ--GGLKPCYVEFLQQFQVKANLVVPIRVRRNLWGLL 559

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             I+   D  R+  +  L+LL     +  I    +                   L    +
Sbjct: 560 --IVHQCDRPRQWTELELDLLKHLADQMGIALTQSQLLAQETRQAQLLALQNEELNVAKQ 617

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              KA+  K++F+  +S+E+R+P+  IIG + LL  +   +L  +Q  YVE I  SS  L
Sbjct: 618 VAEKANMAKSNFLATMSHEIRTPMNAIIGMSGLLLDT---TLKPEQFDYVETIRNSSHTL 674

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
           L ++NDILD + +++G ++L      L   + E    +A +     I +    +    + 
Sbjct: 675 LTIINDILDFSKIESGKLELEEQPFDLRLCVEEALDLLAPQAASKGIELMYQLEPDTPTL 734

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--------DNGDFIFSVKNNGSSI 730
            V D  R+ QI   ++SNA+ F+  G   + + A +           +F F+V++ G  I
Sbjct: 735 VVGDITRIRQILWNLVSNAVKFTKIGEICITIGAKQKIYKQTDPTRYEFQFAVQDTGIGI 794

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             D    +F  F         +  G GLGL+I +    + GG + + S     +     
Sbjct: 795 ERDRLHRLFKPFSQVDASMTRRYGGTGLGLAISKRLSEIMGGKMWVESQSHQGSIFYFT 853


>gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1070

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/507 (19%), Positives = 191/507 (37%), Gaps = 32/507 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +         +      +I + D    +   N +   L E  +   A N     + E 
Sbjct: 305 AELRSSEERYRTLFERSLDSIFLIDDEGQVSESNPAAQSLVEHSIGHFAMN----SIFEL 360

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ---TLHVIVTSNPRGGTIWM 415
           L      PE  N +   + + +  +     ++   + +G+    L V   S      + +
Sbjct: 361 LA-----PEGENLQAMLDLVNAARQGHRAQQEI--IISGEKPIYLDVHAVSMDETHILLV 413

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             N+T +   E +     +   +  +   E +     DG           +       L 
Sbjct: 414 ARNITRRKTSELRLRESEQRFRDVSNAAGEYIWEIDSDGCFTFLTDRVVDVLGYPAEELL 473

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAI-ITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             +    I    ++         + A    + F     +  GT+       LE S +P+ 
Sbjct: 474 GRSPFSLIPPEDAQKVQRVFSRIVRAQKSFSGFSYRCITRSGTI-----IWLEISGVPIV 528

Query: 535 N-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                        +++T   RAE AL E       + ++K+ F+ ++S+ELR+PL  I+G
Sbjct: 529 GPYGTVQGYRGVGLDITLRKRAEEALQEARRQAEDSSQLKSMFLANMSHELRTPLNAILG 588

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           ++++L+         +    +  I ++   LL L+ND+LD++ ++AG M +    + +  
Sbjct: 589 YSEMLQEDAAVMGAQEMVGDLAKIHSAGEHLLRLINDVLDISKIEAGKMDVYLEEVNIAR 648

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ +V  +I   + +N     +     LG+   D  ++ QI   +L+NA  F+  GS + 
Sbjct: 649 LVRDVADTITPLVRKNKNHFHLECGQNLGAMHTDLTKVRQILFNLLNNAAKFTQNGS-IT 707

Query: 710 LKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
           L+             F V + G  I +    S+F  F         +  G GLGL+I +S
Sbjct: 708 LRVQCQEDREIPTISFQVIDTGIGIEQQRLSSLFQSFTQADVSISRKYGGTGLGLAISQS 767

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
           + +L GG ++  S     +T    +P 
Sbjct: 768 YSHLLGGGITAHSKPGAGSTFCLTLPL 794



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 87/282 (30%), Gaps = 27/282 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
             + LA   +   +L +    ++ LF+     ++  D  G +  +N + +   E     F
Sbjct: 294 WRNMLARDRIS-AELRSSEERYRTLFERSLDSIFLIDDEGQVSESNPAAQSLVEHSIGHF 352

Query: 234 Q-KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-KIVRVLNSFGEA-G 290
              +I E      E ++  +   +A  +        +  G    Y  +  V         
Sbjct: 353 AMNSIFELLAPEGENLQAMLDLVNAARQGHRAQQEIIISGEKPIYLDVHAVSMDETHILL 412

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           +A ++++  T   +L  + +   +++ A    I   D +    F     V++       L
Sbjct: 413 VARNITRRKTSELRLRESEQRFRDVSNAAGEYIWEIDSDGCFTFLTDRVVDVLGYPAEEL 472

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWK--ENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                             +P +   K  +    I    KS           +G  + + +
Sbjct: 473 LGRSPFS----------LIPPEDAQKVQRVFSRIVRAQKSFSGFSYRCITRSGTIIWLEI 522

Query: 405 TSNPRGGTIWMFE-------NLTVQVDLETKYNTLVKVQGET 439
           +  P  G     +       ++T++   E       +   ++
Sbjct: 523 SGVPIVGPYGTVQGYRGVGLDITLRKRAEEALQEARRQAEDS 564


>gi|295402149|ref|ZP_06812108.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112731|ref|YP_003991047.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294975832|gb|EFG51451.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217832|gb|ADP76436.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 609

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/386 (23%), Positives = 159/386 (41%), Gaps = 28/386 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + H+++GV      GRI L N A  ++  
Sbjct: 238 GQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRIILINDAALNILN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLE 527
                +   + I ++     +Y  E+   +  + I+  S D+E   L+ +L         
Sbjct: 298 VSRETVLS-SSIIDVLGIGDQYTFETLLEEQDSLILDFSTDEELYILRASL--------- 347

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S+I           V + D    E           K D  +  FV +VS+ELR+PLT +
Sbjct: 348 -SVIQKETGFVNGLIVVLHDITEQE-----------KIDRERREFVANVSHELRTPLTTM 395

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + + L         +   +++E I   +  ++ LVND+L L+ +D+   KLN S +  
Sbjct: 396 KSYLEALAEGAWQD-KAIAPRFIEVIQTETERMIRLVNDLLQLSKLDSKDYKLNKSWVNF 454

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           ++  ++V         E NI        +      D  ++ Q+   I+SNA+ +S +G  
Sbjct: 455 SEYFHKVIDRFELTKSE-NITFVRKIPKEAIFIEIDEDKITQVLDNIISNAIKYSPQGGK 513

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           +  +      + I SV + G  IP+     VF RF        R   G GLGL+I +  +
Sbjct: 514 ITFRVRELADEIIVSVSDEGVGIPKADLAKVFERFYRVDKARSRKLGGTGLGLAIAKEVV 573

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
             HGG +   S +   TTI   +P +
Sbjct: 574 IAHGGTIWAESKEHKGTTIFFTLPLE 599



 Score = 45.7 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 22/163 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N + + +  +    + ++   D L
Sbjct: 253 EAQATTEGERRKLESVLTHMTDGVIATDRRGRIILINDAALNILNVSRETVLSSSIIDVL 312

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIW 414
                    + +Q  ++T  E   S+     T ++ + L    +L VI        G I 
Sbjct: 313 G--------IGDQYTFETLLEEQDSLILDFSTDEELYILR--ASLSVIQKETGFVNGLIV 362

Query: 415 MFENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEG 446
           +  ++T Q  +D E +           T +      ++ L+EG
Sbjct: 363 VLHDITEQEKIDRERREFVANVSHELRTPLTTMKSYLEALAEG 405


>gi|220909132|ref|YP_002484443.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
 gi|219865743|gb|ACL46082.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
          Length = 1255

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/652 (18%), Positives = 227/652 (34%), Gaps = 48/652 (7%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
            +L+E     + L      F++   ++  L+W  D   D +  +    + T       +  
Sbjct: 610  DLSERKQTQQALQKANERFELAAAAVTSLIWEWDLQTDQVERSCGLVELTGYGLEEAEPT 669

Query: 237  IGESRKLFKEEIKKRMISSSALEK----NFCETVSTLEHGNNKSYKIVRVL--------N 284
                 +    E   +M  +S  ++    +       + H       +            N
Sbjct: 670  ANWWLEKIHPEDLAKMDQASFFQQLPVLDRYAGEYRIRHKEGHYVWVEERGLVVKDLQGN 729

Query: 285  SFGEAGIAIDVSK-----------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
                 G   D+S            + T+  QL     I     V +   DQN   Q  N+
Sbjct: 730  PIRIVGSTTDISDRKEFELALQASQETIRSQLLEIEAIYQTAPVGLGWLDQNLCFQRVNQ 789

Query: 334  SFVELWEIDLAFLATN------PSNDELLE-FLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            +  ++  + L            P   +L E  LR   +  E          I     ++ 
Sbjct: 790  ALADINGVALEDHLGRTVREVIPKLADLAEPLLRQVLETGEPR----LNVEIEGETAAAP 845

Query: 387  THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
              + TW         V  +S    G   + + +T +   E +     +   + +    +G
Sbjct: 846  GLRRTWLE---SWFPVRNSSAEVSGINLVVQEVTERKQAEQELRASEERYRQLVTICPDG 902

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AIIT 505
            + +    G    +NPA   L          G  +                  L     + 
Sbjct: 903  ILI-QRGGIFMFANPAALKLLGAVTPEQVIGHPVLEFIHQDDHELVLERLHRLAEGEAVP 961

Query: 506  SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-----TEKNE 560
              +++   L GT+     + +       P  Q ++  +     +  +R L         E
Sbjct: 962  PIEEKWLCLNGTIAHTEVAAVPLLYQNQPAVQVVIRDITERKQLEQQRELLLVAAEVARE 1021

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               +A+  K+ F+  VS+ELRSPL  I+G+  LL+T       +   + +E I  +    
Sbjct: 1022 EAEQANRAKDEFIAVVSHELRSPLNAILGWAKLLQTRSFEP--AMLRRGLETIERNVETQ 1079

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            + L+ D+LD++ +  G ++LN+  + L  L+ E   ++   +    + +      +    
Sbjct: 1080 VQLIEDLLDISRMVRGTLRLNFMPVNLVALVEETLLNLQPSITAKQLDLGYYPGSEEIRV 1139

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
              D  RL QIF+ +L+NA+ F+  G  V ++           V + G  I  D    +F+
Sbjct: 1140 AGDLHRLQQIFANLLTNAIKFTPAGGQVEVRLVNCGAQVQIMVIDTGKGIAADFLPYIFD 1199

Query: 741  RFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
            RF       + + G+GLGL+IV   + LH G +  +S+      T    +P+
Sbjct: 1200 RFRQGNDAREPQEGLGLGLAIVRHLVELHKGTIQAASAGPGQGATFTVTLPT 1251



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           ++ +    A  + D    +Q  NR+   L       L   P    LL ++  A +     
Sbjct: 378 DLFNFAPDAYLVSDAQGLIQEANRAACLLLGSGAETLIGTP----LLLYVAEAER----- 428

Query: 370 NWKTWKENIFSVYKSSETHKDTWHL--------PNGQTLHVIVTSNPRGGTI---WMFEN 418
             + ++  ++ + +S      ++ L        P    + V   S+P+G  I   W+  N
Sbjct: 429 --RQFRTQLYELNQSPVPQTQSFELHLRSDCGEPFPAAITVSAISDPQGKRIGFRWLIRN 486

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T +   E           + +D    GV  +  DG I  +N +F +L   +   L+ G 
Sbjct: 487 ITERKQAELALQQSEARLRQLVDLNLIGVMFWDVDGTILDANQSFLNLVGYDREDLTSGR 546


>gi|218779450|ref|YP_002430768.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218760834|gb|ACL03300.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 1056

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 155/362 (42%), Gaps = 13/362 (3%)

Query: 440  IDHLSEGVAVFGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            ++ L+ G  V        IK++ P   ++             +R+I           +  
Sbjct: 687  VNTLAHGSYVIAKYNISNIKVAAPMDGTVDGIRIAVRKDWPILRDILQKGLDSITPEEAA 746

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERAL 555
             + A  IT   +  + ++  L+  + +VL     ++ L           +      E  L
Sbjct: 747  AIRARWITVRFEHGREVRTILKW-AGAVLGVILCMMLLVFVWNRRLAKEIARREELEAHL 805

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                E    AD +K++F+  +S+ELR+PL +IIGF+ ++     G LN +Q + +  +  
Sbjct: 806  VTAKEKAESADRLKSAFLATMSHELRTPLNSIIGFSSIVLQELPGPLNKEQKKQMGMVRN 865

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S+  LL L+ND+LD++ ++A  + L        + +N V QS+     +  + +++  D 
Sbjct: 866  SARHLLALINDVLDISKIEADQLVLAPEEFDFTEAVNGVVQSVRPLAEKKGLELELKQDA 925

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSS 729
                   D++R+ Q+   +++NA+ F+ KGS  +L +   N         +  +++ G  
Sbjct: 926  SKLRIFCDKRRMEQVLINLVNNAIKFTEKGSVSVLVSGPSNRNPHGVDMVMIQIQDTGIG 985

Query: 730  IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I       +F  F         +  G GLGLSI +  + L GG +++ S     +    R
Sbjct: 986  IQPGDFSKLFKPFRQIETGLDRKYEGTGLGLSICKKLVGLMGGEITVESEIGHGSRFTVR 1045

Query: 788  IP 789
            +P
Sbjct: 1046 LP 1047


>gi|78356407|ref|YP_387856.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218812|gb|ABB38161.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 974

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 125/674 (18%), Positives = 244/674 (36%), Gaps = 83/674 (12%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAG-DILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           S    +   LFDS+   V+  D    ++L+ N + +K+             +  +     
Sbjct: 36  SREHDLLLRLFDSVKEYVYVADMETYELLYVNRTLEKDIGPCTGKKCYQFLQGLEEPCPF 95

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR-----VLNSFGEAGIAIDVSKEITVN 302
               +I +     +  E  + +     + Y+ +      V N      +A+D+S   T  
Sbjct: 96  CTNDIIRNDPDSSHIWELYNPVL---KRWYRCIDRAIPWVGNRLVRYELALDISDIRTAE 152

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQF--HNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +++      L   + A+ + D    L    ++R++ +L       L   P +  +     
Sbjct: 153 EEMRRFRMALEASSDAVYLTDLRTGLFVDVNSRAYTQLGYTREEILGMRPEDINI---AV 209

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           S + L E               ++   HKD   LP    L  + T +     + +  +++
Sbjct: 210 SEHGL-EPYLRNVLDGRDEGAVETYHRHKDGTLLPVEVGLRRLTTVSSE-LLVSVARDIS 267

Query: 421 VQVDLETKYNT--------------------LVKVQGETIDHLSEGVAV---------FG 451
            + D +    T                     +     T++ L E V V           
Sbjct: 268 ERRDAQRDLATRLMYERVLSTCARELLSQFSSLNAMHTTLESLRETVDVCRVYIFENFIN 327

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGT-HIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
            DG++      F    +   ++               SR+    +     + ++  F +E
Sbjct: 328 DDGQL-CCRHRFEVCSEGVASQFGKSELECVPYLPAFSRWAQTLEQGKALSGLVDEFPEE 386

Query: 511 RKSLQGTLELLSDSVL-------EYSIIPLPNAQTMLTFVNVTD---------------S 548
            + L    ++ S  VL        + +I   + +TM  +  + +                
Sbjct: 387 EQPLLRAQDIQSILVLPLKVGGQWWGLIGFDDTRTMRRWTQLDEQLLMTAAEIIAAAIER 446

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            RA++ L + +     A   K+ F+ ++S+E+R+PL  IIG T+L   S    L     +
Sbjct: 447 NRAQKQLEKTSREAEAASRSKSEFLANMSHEIRTPLNAIIGLTEL---SLQEDLPEGVGE 503

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +    +S+  LL++VNDILDLA V++G + L      L   L  V + +  +     + 
Sbjct: 504 NLRASLSSAEALLDIVNDILDLARVESGKLHLEEVEFSLPRFLGGVMRVMRHEAERKGLD 563

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-------DF 719
             +     L    + D  RL QI   ++ NA+ F+ +G   V ++    +G         
Sbjct: 564 FSMFLGRGLPRELMGDSGRLRQILVNLIGNAIKFTEEGGVNVAVECVSSSGGYIAGVQRV 623

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F+V++ G  IPE +   +F  F         +  G GLGL+I    + + GG +S+ S 
Sbjct: 624 RFTVQDTGIGIPEHLHGIIFENFRQADGSITRKYGGTGLGLTISRQLVEMMGGSISLRSE 683

Query: 778 DEGVTTINCRIPSK 791
               +     +P K
Sbjct: 684 AGKGSRFEVELPFK 697


>gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 641

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 112/562 (19%), Positives = 230/562 (40%), Gaps = 80/562 (14%)

Query: 275 KSYKIVRVLNSFGEAG------IAIDVSKEITVNDQLTHTYEILHNL-TVAIAIFDQNRY 327
           ++  ++RVL    E G      I ++  +      Q     E L  L    ++  D +  
Sbjct: 111 RTDDVMRVLRHALEIGKLRREAIMLETRRATASLQQRLDELETLARLGRTVVSSLDLDHV 170

Query: 328 LQFHNRSFVELWEIDL-AFLATNPSNDELLEFLRSANKLPEQLNWKTWK----------- 375
           L     + VE+   +  + L  +P+  EL  ++R+A    E    +T++           
Sbjct: 171 LSAVVDAAVEMTGAEEGSLLMLDPATGEL--YMRAARNFNEDFV-RTFRLPVKDTLAGTV 227

Query: 376 ----------ENIFSVYKSSETHKDTWHLP---NGQTLHVIVTSNPRGGTIWMFENLT-- 420
                     ++     K++   +   ++P   +G T  V+   N + G  +   +L   
Sbjct: 228 IRTGQPVLLDDSTPQKIKTTYLVQSLLYVPLAVHGHTFGVLGVDNRQHGIPFTEHHLKLL 287

Query: 421 -----------VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
                          L T+  T  +     + ++ +GV +   + R+ L N   R  +  
Sbjct: 288 GALAEFATIAIENARLYTETITERRKLETVLTNVQDGVVLMDREKRLLLVNQTVRQAFSL 347

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            EN L+ G   R++ +  +         +              + +  +++         
Sbjct: 348 PENHLT-GRSFRDVFSHPALLELLEGLEN-------------GTDRTEVQVEDGRYFTVR 393

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + P+P     LTF ++T              +L+K D+IK+ FV  VS++LRSPLT I+G
Sbjct: 394 VSPIPEVGIALTFSDIT--------------SLKKLDQIKSDFVHTVSHDLRSPLTAILG 439

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           + +L++   +G++N  Q  ++  I  S   + +LV+D+LDL  ++AG        + L+ 
Sbjct: 440 YVELIER--VGTVNDLQRDFIRRIQVSVHNITSLVDDLLDLGRIEAG-FDTRKEPVALDA 496

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++    +     + E    +++    +  S +A+  ++ Q+   +L NA+ ++ +G  + 
Sbjct: 497 IIRYSVEGFKKALGEKGHTLQLDLPAQAPSLLANPVQMRQMVDNLLDNAIKYTPQGGKIQ 556

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLH 768
           +    +    +F V +NG  IP      VF++F   ++      G GLGL+IV+S +  H
Sbjct: 557 VSLRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFYRASNAAPDVSGTGLGLAIVKSIVEAH 616

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
            G + + S+    +T    +P 
Sbjct: 617 EGRIWVDSAVGTGSTFTVVLPL 638


>gi|319640176|ref|ZP_07994902.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388163|gb|EFV69016.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 820

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 208/510 (40%), Gaps = 30/510 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     +  +   I  NL   I ++D++ ++        +L + ++         D +  
Sbjct: 318 ESEARLEKAYLQNIYKNLPAGIELYDKDGFMT-------DLNDKEMEIFGLRHKEDVIGL 370

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQ-TLHVIVTSNP------- 408
            L     LP+ L  K        + +       D ++  +   T+ +I    P       
Sbjct: 371 NLFDNPLLPQGLKDKLKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLYDALGN 430

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRS 465
               + +  + T   +  +K     +      ++   G A F     DG     N  +R+
Sbjct: 431 LINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDG--YAVNSWYRN 488

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSD 523
           + + E   L+    + +      R         +     +    + + L   GT      
Sbjct: 489 VGEKEGTPLNEIIKVHSHFHPDDRRMMLRFFDQVLIREASHLRRDVRILREDGTYTWTRV 548

Query: 524 SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +V+     P       +    ++T+    ER L    +   + D +K++F+ ++S+E+R+
Sbjct: 549 NVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRT 608

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL  ++       + QY+  +  ++ +LL L++DILDL+ +++G  +   
Sbjct: 609 PLNAIVGFSSLLTETEDMK---DRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVK 665

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S   +N L +E+ +S+  K+    + +            AD+ RL Q+ S  ++NA+ F+
Sbjct: 666 SDTDVNLLCSEIIRSLRMKVPA-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFT 724

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             GS  +    + +G   F V++ G  IP++  K+VF+RFV         G GLGLSI +
Sbjct: 725 FSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH--GTGLGLSICK 782

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           S +   GG + + S +   +      P +E
Sbjct: 783 SLVEQMGGTIGVESEEGEGSCFWFTYPYQE 812


>gi|167040619|ref|YP_001663604.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300914660|ref|ZP_07131976.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307724106|ref|YP_003903857.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|166854859|gb|ABY93268.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300889595|gb|EFK84741.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307581167|gb|ADN54566.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
          Length = 456

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 22/364 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N         +  +  GV  F  + +I L N A R +   +E  L  G HI  I   
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDL-IGRHILEIVR- 162

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  S   D F  +  + +   KSL+  +      V    I+   + Q +   + + 
Sbjct: 163 ------NSKLHDFFEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIID 216

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     R            ++I++ FV +VS+ELR+PLT+I GF + L+   + +  ++ 
Sbjct: 217 DITEMRRL-----------EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQAR- 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++ I   S  L  L+NDIL L+ ++          I L++ + ++   +       N
Sbjct: 265 DKFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKN 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +K   +        ++ R  Q+   ++ N + ++ +G  V +    +    I +V++N
Sbjct: 325 ITLKKDLNCTDLVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIITVEDN 384

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F RF        R   G GLGL+IV+  +    G + + S     T  
Sbjct: 385 GIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKF 444

Query: 785 NCRI 788
             + 
Sbjct: 445 IIKF 448



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 23/227 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +ND+      IL ++   +  FD N  +   N +  ++  I    L        +LE 
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDLIGRH----ILEI 160

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +R++        ++  K+N  S  KS E +    HL    +  +   S+   G + + ++
Sbjct: 161 VRNSKL---HDFFEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIIDD 217

Query: 419 LTVQVDLETKYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +T    LE   +  V          +  +  G      +G I   NP  R          
Sbjct: 218 ITEMRRLEKIRSEFVANVSHELRTPLTSIR-GFIETLRNGAID--NPQARD--------- 265

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                I   +   +R  N+         +   +  E   L   +E +
Sbjct: 266 KFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDI 312


>gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 539

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 14/278 (5%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           EL+ D+  +Y I      Q   T    ++  R    L + N  L ++  +K+ F+ ++S+
Sbjct: 149 ELIEDNYRQYRIN--QQQQEEYTRNLESEIARQTAELRQANARLEESSRLKSEFLANMSH 206

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+  I GF +LL  +    LN +Q +Y   I  ++  LLNL+NDILDLA ++AG +
Sbjct: 207 ELRTPMNAITGFAELLAET---PLNQEQDEYCRTIRQAAAALLNLINDILDLAKIEAGKL 263

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSN 697
            L      L++LL  V+        +  I I +   +G   +   D  RL Q+   +L N
Sbjct: 264 DLETVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGN 323

Query: 698 AMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           A+ F+ +G  V L+      A D     F+V+++G  I     +++F +F        RR
Sbjct: 324 AIKFTEQGG-VELEVAAGSTAADKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTRR 382

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I    + L GG + +SS     +T +  I
Sbjct: 383 FGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEI 420


>gi|27375770|ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27348908|dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 743

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 152/374 (40%), Gaps = 16/374 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +D   +     +      +   + + +     RI  +N A+ +L       L      
Sbjct: 97  ALIDRNWELKEAEERARSLFEQQGDLIVLRDHQNRITFANDAYCALAGQARGALVGTRFD 156

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            ++            G     +  T   D++ +       ++       +     A+   
Sbjct: 157 FDVLE---------QGDSARESSGTRVHDQKIATPLGARWIAWREGYVRLDAGQPAELQS 207

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +VTD    ERAL++  +    A+  K+ F+   S+E+R+PL  IIG   LL  +   
Sbjct: 208 VGRDVTDRTETERALSDARDQADAANRAKSRFLAMASHEIRTPLNGIIGMGGLLLDT--- 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L  +Q+ Y + +  S   L+ L+ ++LD + ++AG + L      L+ L+ E+ + +A 
Sbjct: 265 TLTPEQATYAKAVKTSGEALMALIEELLDYSKIEAGKLDLEQRPFALSTLIEEITELLAP 324

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +     + I    D +L    V D  RL Q+   +  NA+ F++ G   +I++      +
Sbjct: 325 RAQAKTLEIAAYVDERLPLEVVGDAARLRQVLLNLAGNAIKFTASGGVALIVEPGIRPNE 384

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I  +  + +F  F     R      G GLGL+I E  +   GG ++++S
Sbjct: 385 ISFLVRDTGIGIAAEAQQRIFREFEQADERVARTYGGTGLGLAISERIVKRMGGRITLAS 444

Query: 777 SDEGVTTINCRIPS 790
                +T    +P 
Sbjct: 445 EPGKGSTFEVAVPL 458


>gi|289665595|ref|ZP_06487176.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1364

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/616 (15%), Positives = 216/616 (35%), Gaps = 65/616 (10%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y+  T       +  + +   ++          +++   +  +    L  G         
Sbjct: 269 YRSGTPANDSALRPPVVQLLPMYGRTWVITAHPTASFLASLNQNSPWLIGG--LVMAGAV 326

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +  +      +  + +E  +  Q+     ++ + + AI     + ++   N +   ++  
Sbjct: 327 LFAALLVLYFSNGLRREEVLRKQME-LAALVSHSSEAIVAETPDGHITHWNPAAEAMFGY 385

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                    + +E ++   +    P+            ++  ++   +   H  +G  ++
Sbjct: 386 ---------TAEEAIDQDLTMLLSPQPYAMPEVDHADAALAGNALAAQTMRHR-DGHQVY 435

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVK------------------VQ 436
           V+ +  P         G    F +++ +V    +   L                    +Q
Sbjct: 436 VLASKAPIIESEGTLSGHSHFFRDISERVRSHQRIIDLNASLEHQVAERTSELVKFSVLQ 495

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              + H    +      G + L NPA   L       +                      
Sbjct: 496 RAILAHAGYAIIATDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFIEQDELQARAHML 555

Query: 497 WDLFAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS------ 548
            D     +    +   +L   G  +    + + +    LP   T+ T  +  D       
Sbjct: 556 ADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLG 615

Query: 549 --------VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                      E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+  
Sbjct: 616 VAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE-- 673

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L     + V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + +
Sbjct: 674 -LPGAAQEMVTKIDRSARALLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRS 732

Query: 661 KMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
            +    + + V          + D  R+ Q+   ++ NA+ F+ +G  V+      +GD 
Sbjct: 733 SLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +FSV++ G  I ++    +F+ F+       RR  G GLGL+I    + L GG +
Sbjct: 793 NKLKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852

Query: 773 SISSSDEGVTTINCRI 788
            + S     +     I
Sbjct: 853 EVESVPGRGSEFYFVI 868


>gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 977

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 153/369 (41%), Gaps = 12/369 (3%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAAT 486
           +     +   +       G+      G     NP ++ +     +  +  G H       
Sbjct: 203 ELQASEQRYRQLSSSAPIGIFESDAGGLCLYVNPHWQKIAGLSLDEAIGTGWHQIMHPED 262

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +R   E +   +      S    R+   G +  +    +            + T  ++T
Sbjct: 263 DARVRREWENAVVAGRQFNSEHRYRRP-DGDVRWIHARSVVIRSETGEVIGHVGTVEDIT 321

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E  L++  +A  ++  +K+ F+ ++S+E+R+P+  +IG T+LL  +   SLN++Q
Sbjct: 322 ERKYVEAQLSKACDAALESARLKSRFLANMSHEIRTPMNGVIGMTNLLLDT---SLNNEQ 378

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             + E I AS+  LL ++NDILD + ++AG M        L+D++    + +A + H   
Sbjct: 379 RDFAETIRASAEGLLTVINDILDFSKIEAGKMTFEDLDFNLHDVVESTLELLAKQAHTKG 438

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIF 721
           I +    +  + +    D  R+ Q+ + ++SNA+ F+  G   I  +  D+         
Sbjct: 439 IELAGFIEPNVPTRLRGDAGRIRQVLTNLVSNAIKFTQTGEVTIRTSCLDDQGSQCQLRL 498

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I  +  K++F  F        RR  G GLGL+I +  +    G + + S+  
Sbjct: 499 QVSDTGVGISPEAQKNLFEAFNQADASTTRRFGGTGLGLAICKQLVEKMHGCIGLESTPG 558

Query: 780 GVTTINCRI 788
             +     +
Sbjct: 559 KGSIFWFTL 567



 Score = 41.1 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 15/140 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E      +L      ++ L  S    ++  D  G  L+ N  ++K     G+   +AIG 
Sbjct: 196 ELQAAHHELQASEQRYRQLSSSAPIGIFESDAGGLCLYVNPHWQK---IAGLSLDEAIGT 252

Query: 240 S-----RKLFKEEIKKRMISSSALEKNF-CETVSTLEHGNNKSYKI------VRVLNSFG 287
                        +++   ++    + F  E       G+ +                 G
Sbjct: 253 GWHQIMHPEDDARVRREWENAVVAGRQFNSEHRYRRPDGDVRWIHARSVVIRSETGEVIG 312

Query: 288 EAGIAIDVSKEITVNDQLTH 307
             G   D+++   V  QL+ 
Sbjct: 313 HVGTVEDITERKYVEAQLSK 332


>gi|313149253|ref|ZP_07811446.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138020|gb|EFR55380.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 525

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/514 (20%), Positives = 217/514 (42%), Gaps = 57/514 (11%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS-- 361
           +  ++  IL  L   + +FD N  +                 LA++P+ + +        
Sbjct: 42  RERYSTRILDALPDMLTVFDHNANIV---------------ELASSPTTNHVEGTTAESI 86

Query: 362 -----ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHV--IVTSNPRGGTI 413
                 + +PE+  +++ ++N+  V ++ ++      L  +G   H    +        +
Sbjct: 87  INSNVRDIVPEEA-YESVRQNMDKVIRTGKSSIAEHSLTLDGVLHHYENRIFPLDDQYLL 145

Query: 414 WMFENLTVQVDL----ETKYNTLVKV---QGETIDHLSEGVAV--FGPDGRIKLSNPAFR 464
            M  +++ + ++    E + + +V++     + ++++   + V   G D R    N AF 
Sbjct: 146 CMCRDVSQETEMARTNEAQRSEIVRLNSLMNDILNNIPVYLFVKDTGNDFRYLYWNKAFA 205

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNES-DGWDLFAAIITSFDDERKSLQGTLELLSD 523
                           R + +T +  + +  D   L    + + +  R     T   +S 
Sbjct: 206 EYSGISVE--------RAVGSTDAEIFPDKKDAERLRQDDLKAMELGRIEYLETYTTMSG 257

Query: 524 SVLEYSIIP--LPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                + +   +P+       +    +VT++ + E+ L        +AD +K+SF+ ++S
Sbjct: 258 EARTVTTMKTVVPSGGRYPYIIGVSWDVTETKKTEKELIAARIKAEEADRMKSSFLANMS 317

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ L+          ++ QY + +  +S++LLNL NDILDL+ ++AG 
Sbjct: 318 HEIRTPLNAIVGFSKLIIE---ADDEYEKRQYADIVEHNSSVLLNLFNDILDLSALEAGS 374

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++L+Y  + L D+  ++ +    K  +  +R+ +           D +R+ QI   +++N
Sbjct: 375 LELSYHPVKLKDICLQLHELY-VKSVKPEVRLMLDEVDPQLCIQGDWERISQILVNLITN 433

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A+ F+S G  +            F V + G  IP +   ++F RF       Q  G GLG
Sbjct: 434 AIKFTSAGE-IHFGFQEKADMVQFYVSDTGKGIPAERVATIFQRFGKIDDFVQ--GTGLG 490

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L+I    +   GG + + S     T     +P K
Sbjct: 491 LTICRMLVEKMGGRIWVRSKQGKGTVFYFTLPVK 524



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 6/161 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK-LSNPAFRSLWKTEENRLS 475
           E L+ ++D   K     +     +D L + + VF  +  I  L++    +  +       
Sbjct: 27  EGLSSELDSLKKGRFRERYSTRILDALPDMLTVFDHNANIVELASSPTTNHVEGTTAESI 86

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             +++R+I    +      +   +     +S  +   +L G L        E  I PL +
Sbjct: 87  INSNVRDIVPEEAYESVRQNMDKVIRTGKSSIAEHSLTLDGVLHHY-----ENRIFPLDD 141

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              +    +V+      R    +   + + + + N  + ++
Sbjct: 142 QYLLCMCRDVSQETEMARTNEAQRSEIVRLNSLMNDILNNI 182


>gi|294667293|ref|ZP_06732513.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602965|gb|EFF46396.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 631

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/498 (19%), Positives = 192/498 (38%), Gaps = 53/498 (10%)

Query: 320 AIFDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            +FD  + + +     N +F     +    L  +             N LPE    + W 
Sbjct: 1   MVFDGEQAVDYVIRTTNGAFERYTGLSPNALNVSI-----------RNLLPEHE--QEWF 47

Query: 376 ENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +    V ++    H +       +   V    V    +     +F ++T +  +E +   
Sbjct: 48  DRYGHVARTGNRIHFEMQAKALKRWYSVDAFRVGQPEQARVAILFMDITERKRVERELAE 107

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
                    D L   V V    G ++  N A+   +  + +  +         +  S   
Sbjct: 108 SEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT--------VSAWSELL 159

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVNVTDS 548
           +  D       +  S  ++R           D     +E +  P  +A      +  +  
Sbjct: 160 HPDDLPTFQFELAASLQEQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSP 219

Query: 549 VRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              E R +    E L +++            +K+ F+  +S+ELR+PLT I+G+++LL  
Sbjct: 220 DVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQ 279

Query: 597 SKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                +   Q  Y  +  I++S+     L++D+LDL+++  G ++L   ++ L + + E 
Sbjct: 280 R----VEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREA 335

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +        +  +++ +       + D  RL Q+   +LSNA+ F+     + +K  R
Sbjct: 336 LNTQELAAEGKDQVLELHAPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIER 395

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           D+G  + SV ++G  I  +    +F RF        R   G+GLGL+IV+  + +HGG V
Sbjct: 396 DDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQV 455

Query: 773 SISSSD-EGVTTINCRIP 789
             +S       T   R+P
Sbjct: 456 GATSGGRGKGATFTVRLP 473



 Score = 57.6 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +      ++ T  
Sbjct: 94  DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVS 153

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +    +    F+ E+   +     L             G  +  ++           
Sbjct: 154 AWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRH---DGQWRWIEMTATPRYSADGR 210

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G AG + DV+++  +        E
Sbjct: 211 FIGLAGSSPDVTEQREIELAREQLLE 236



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 28/237 (11%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N ++++ T         +I       ++E   R                       + Y 
Sbjct: 17  NGAFERYTGLSPNALNVSIRNLLPEHEQEWFDR--YGHVARTGNRIHFEMQAKALKRWYS 74

Query: 279 IVRV----LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
           +             A + +D+++   V  +L  +      L   +     + D    ++F
Sbjct: 75  VDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRF 134

Query: 331 HNRSFVELWEIDL------AFLATNPSNDELLEFLRSANKLPEQLNWKTW--KENIFSVY 382
            N ++ E + +D+      A+      +D        A  L EQ   +           +
Sbjct: 135 VNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQW 194

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +  E      +  +G+ +          G      ++T Q ++E     L++ +   
Sbjct: 195 RWIEMTATPRYSADGRFI----------GLAGSSPDVTEQREIELAREQLLESERSA 241


>gi|120603308|ref|YP_967708.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563537|gb|ABM29281.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 559

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 157/383 (40%), Gaps = 36/383 (9%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                  +   + +  + + + V   +  I  SN             L    H     + 
Sbjct: 27  EALRARERTLRDILLSIPDMITVHDRNESIVFSN---WKGDDLYWENLGGERH----GSR 79

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS---IIPLPNAQTMLTF- 542
           C   Y   +       I   FD     +Q ++EL +  +  +    + P+ NA   +   
Sbjct: 80  CYGCYFRGEKQCDACQIAEVFD---TGVQKSIELYNPEIRAFRSITVFPVHNAAGEVVMV 136

Query: 543 ----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                +VT + R ER L    EA   AD+ K+ F+  +S+E+R+P+  ++G  DL   ++
Sbjct: 137 AEYVRDVTATRRMERELRVAKEAAEAADKAKSEFLASMSHEIRTPMNGVLGMLDLALDTR 196

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q  Y+E    S+  LL L+NDILD + ++AG+++L+     L   L+ +    
Sbjct: 197 ---LDDEQRDYLEAAQNSAESLLALINDILDFSKIEAGMVELDSQAFRLRKRLSTLHTMF 253

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  E  +        ++    V D  RL Q+   +L NA+ F+ +G  V L    D  
Sbjct: 254 VHRAEEKGLAFGFRIGEEVPDGLVGDPMRLRQVLVNLLDNAIKFTEQG-RVYLDVQLDAA 312

Query: 718 D-----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
                         FSV ++G  I E   + +F RFV        + RG GLGL+I +  
Sbjct: 313 QGALPAEGEPILLRFSVTDSGPGILESHREHIFERFVQADGSLSRRHRGTGLGLAICKRL 372

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
             L GG +++ S+    +T    
Sbjct: 373 ATLMGGDITVESAPGSGSTFTFT 395


>gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37]
 gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 968

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 134/255 (52%), Gaps = 14/255 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               ++AL  + E   KA + K+ F+  +S+E+R+P+  ++G T+L+  ++   L+S+Q 
Sbjct: 419 RKNIQQAL-HEKEIAVKASQAKSEFLATMSHEIRTPMNGVLGMTELVLETE---LSSEQR 474

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +++E I +S   LL+++NDILD + ++AG ++L+   + L +L+  +  S++    +  +
Sbjct: 475 RFMEMIKSSGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQELIKHLVTSLSPLAKKKGL 534

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFS 722
           ++      ++ ++V  DR RL Q+ + ++SNA+ F+ +G      VI + +         
Sbjct: 535 QLNYNLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQRGEVLVSAVIFEQSATALSLQIR 594

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  I  +    +F  F        R   G GLGL+I +  I + GG +  SS    
Sbjct: 595 VRDSGIGIAPENQDKIFESFSQADSSTTRNYGGTGLGLAISKQLIEMMGGSIGFSSELGQ 654

Query: 781 VTTINCRI---PSKE 792
            TT    +   P+++
Sbjct: 655 GTTFWFDLKLKPTEQ 669


>gi|28210825|ref|NP_781769.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
 gi|28203263|gb|AAO35706.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
          Length = 571

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 174/398 (43%), Gaps = 39/398 (9%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRI 456
            V + S    G +   F N+  ++      N  ++ Q      +  +  GV     D +I
Sbjct: 202 RVNINSKDEIGQLSNTFNNMADKLQYT--INDSIEKQNKLEAILKSMDNGVIAVDKDFKI 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP  + ++  E++ +      +  +      + E +  D     I S  ++   ++ 
Sbjct: 260 IMINPYAKEIFSIEQDIIGENLLDKIKSYELKEIFKEDNIEDYREVKILSPKEKNLRVKT 319

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T   +   ++           T+    +VT+  + E               I++ FV +V
Sbjct: 320 TDIKIGKQLI----------GTVAVVQDVTEIKKLE--------------NIRSQFVANV 355

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-A 635
           ++EL++PLT+I GF + LK          + +++  I+  S  L  L+NDIL L+ ++ +
Sbjct: 356 THELKTPLTSIRGFAETLK---YVEDRETKDKFLNIINDESDRLTRLINDILALSHIENS 412

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             MKL    I +N++L ++   +     + NI + ++ D K+     DR R  Q+   ++
Sbjct: 413 NSMKL--ENISINEMLEDIVYLMENSAKDKNIELFIVGD-KMQPIKGDRDRFKQMMINLV 469

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRG 753
            N + ++ +G  V + A +++ + I  V++ G  I ++  + +F RF          + G
Sbjct: 470 DNGIKYTEEGGKVYIGAKKEDNNCIVWVEDTGVGISKEHVERLFERFYRVDKARSRSQGG 529

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+IV+  +   GG ++I S +   +    RIP K
Sbjct: 530 TGLGLAIVKHIVLGFGGTINIESEEGKGSKFIIRIPIK 567



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 20/128 (15%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           ++      IL ++   +   D++  +   N    E++ I+   +      + LL+ ++S 
Sbjct: 234 EKQNKLEAILKSMDNGVIAVDKDFKIIMINPYAKEIFSIEQDIIG-----ENLLDKIKSY 288

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GTIWMFEN 418
                    + +KE+    Y+  +        P  + L V  T    G    GT+ + ++
Sbjct: 289 EL------KEIFKEDNIEDYREVKILS-----PKEKNLRVKTTDIKIGKQLIGTVAVVQD 337

Query: 419 LTVQVDLE 426
           +T    LE
Sbjct: 338 VTEIKKLE 345


>gi|254881166|ref|ZP_05253876.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254833959|gb|EET14268.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 809

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 208/510 (40%), Gaps = 30/510 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     +  +   I  NL   I ++D++ ++        +L + ++         D +  
Sbjct: 307 ESEARLEKAYLQNIYKNLPAGIELYDKDGFMT-------DLNDKEMEIFGLRHKEDVIGL 359

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQ-TLHVIVTSNP------- 408
            L     LP+ L  K        + +       D ++  +   T+ +I    P       
Sbjct: 360 NLFDNPLLPQGLKDKLKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLYDALGN 419

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRS 465
               + +  + T   +  +K     +      ++   G A F     DG     N  +R+
Sbjct: 420 LINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDG--YAVNSWYRN 477

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSD 523
           + + E   L+    + +      R         +     +    + + L   GT      
Sbjct: 478 VGEKEGTPLNEIIKVHSHFHPDDRRMMLRFFDQVLIREASHLRRDVRILREDGTYTWTRV 537

Query: 524 SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +V+     P       +    ++T+    ER L    +   + D +K++F+ ++S+E+R+
Sbjct: 538 NVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRT 597

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL  ++       + QY+  +  ++ +LL L++DILDL+ +++G  +   
Sbjct: 598 PLNAIVGFSSLLTETEDMK---DRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVK 654

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S   +N L +E+ +S+  K+    + +            AD+ RL Q+ S  ++NA+ F+
Sbjct: 655 SDTDVNLLCSEIIRSLRMKVPA-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFT 713

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             GS  +    + +G   F V++ G  IP++  K+VF+RFV         G GLGLSI +
Sbjct: 714 FSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH--GTGLGLSICK 771

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           S +   GG + + S +   +      P +E
Sbjct: 772 SLVEQMGGTIGVESEEGEGSCFWFTYPYQE 801


>gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1055

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 96/384 (25%), Positives = 174/384 (45%), Gaps = 23/384 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L  QV   T+     + + + + + S G       G I   N     +     + L    
Sbjct: 538 LRRQVKKRTRELQESEERFKVLHNASFGGIAIHDQGIILDCNQGLSEITGYSADELIGMN 597

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNA 536
            +  I+          D  D+  + I   DD      G  +   +    LE   IP    
Sbjct: 598 GLMLISE---------DSRDMVMSNILFGDDGPYEALGLRKNGEEYPVRLEARNIPYKAK 648

Query: 537 QTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +T F ++T+  RAE AL +       A++ K+ F+ ++S+E+R+P+  ++G   LL+
Sbjct: 649 HVRVTEFRDITEQKRAEEALLQAKTQAETANQAKSEFLANMSHEIRTPINGVMGMLQLLE 708

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T+    L+++Q+ Y+   + ++  L  L+ DILDL+ V+AG M++  +   + D+++ V 
Sbjct: 709 TT---PLDAEQASYIHMATEAANRLTRLLTDILDLSRVEAGKMEIREAPFQIQDIIDSVS 765

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA- 712
              A      N+ ++      +    V D  R+ Q+   ++ NA+ F+ +G  V+ + A 
Sbjct: 766 GLFAVTARNKNVALECRLAPGMPEVLVGDEMRVRQVLFNLVGNALKFTERGRVVMDITAL 825

Query: 713 -ARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
            A+D+GD    F V + G  I ED    +F  F    +      +G GLGLSIV+  + L
Sbjct: 826 PAKDDGDYRVHFRVTDTGIGIAEDRLGDIFEPFRQVENSLTRNYQGAGLGLSIVQRLVGL 885

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
            GG ++I S+    T+ +  +P K
Sbjct: 886 MGGTITIESTLGQGTSAHVVLPFK 909


>gi|126740969|ref|ZP_01756652.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. SK209-2-6]
 gi|126717895|gb|EBA14614.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. SK209-2-6]
          Length = 753

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 161/389 (41%), Gaps = 25/389 (6%)

Query: 422 QVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           Q +LE+ Y  L++ Q E         H ++ + +    GR +  N AF          + 
Sbjct: 223 QQELESAYQRLLEQQTESRRLALVARHANDSILMIDKTGRTEWVNKAFTKTTGYSFKEV- 281

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              + +++    +    +              +  R  L    +      +E   +P+  
Sbjct: 282 ---YGQDLGLLLNHPDTDPVAVKTINEGRARGESFRVELLNKRKDGQAIWVETIQVPILG 338

Query: 536 AQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           A       +    +VT +      L E   A  +    K  F+ ++S+E+R+P+  ++G 
Sbjct: 339 ADGTLQSYIAIERDVTQAKEHADHLEEARAAAEEGARAKAEFLANMSHEIRTPMNGVMGM 398

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL+ ++   L+  Q  Y + I +S+  LL L+NDILDL+ +DAG ++LN +      L
Sbjct: 399 AQLLEETE---LDEDQRLYTDTILSSARTLLALINDILDLSKLDAGKIELNPTDFDPGLL 455

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
             +  + +  +     + +       L +    D  R+ QI   ++ NA+ F+ +G  +I
Sbjct: 456 FEDTLRLMRVQAEAKELELTYEPQADLPTRLRGDDNRIKQILINLIGNAVKFTDEGKVMI 515

Query: 710 LKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
             A+ +         FSVK+ G  I ED    +F RF         +  G GLGLSI   
Sbjct: 516 ALASEELPDGRAMIRFSVKDTGVGIAEDKLSGIFERFTQADAAINRRYGGSGLGLSISRH 575

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +NL  G +S++S     +     +P ++
Sbjct: 576 LVNLMEGEISVASKPGQGSCFTVVLPLEQ 604


>gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 985

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/535 (19%), Positives = 209/535 (39%), Gaps = 53/535 (9%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEI------TVNDQLTHTYEILHNLTVAIAIFDQNRY 327
            KS ++  V     +    +++S+        ++ +       +L N    I   D++  
Sbjct: 46  RKSIELSDVKRQLEDNNYELEISQAKLQNALNSLRESENTLSSVLVNSPDTIIAVDRDHR 105

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           + + NR+           +  +     + + L      P    +    E +    K++  
Sbjct: 106 IIYVNRA-----------MPGHKKTLAVGDHLCDHIMQPYHDRYHHTIERVIVTGKTAVL 154

Query: 388 HKDTWHLPNGQTLHVIVTSNP------RGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
             +    P  +T+ +     P          + +  ++T +  +E      ++++   ID
Sbjct: 155 ECELVVSPE-ETIELESRFAPCFLNGEVTSVVMLSVDITERKGME------LELKKTLID 207

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWK---TEENRLSPGTHIRNIAATCSRYYNESDGWD 498
                  + G + R         SL                 R   AT           D
Sbjct: 208 LERFNRVMVGRELRNIELKKRIASLQNDLVLSSGNAQASDDSRQDFATEDEDCAGIHHGD 267

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
            F          ++     L L+ D+ L  + +   N +   + +   +  RA       
Sbjct: 268 GFEEACDEVQYRKQQRMALLNLIEDANLARNELLETNRKLEESVIRTQEMARA------- 320

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                KA+E K+ F+ ++S+E+R+P+  +IG +DLL  +   SL+ +Q +YVE I +S  
Sbjct: 321 ---ASKANEAKSQFLANMSHEVRTPMNGVIGMSDLLLDT---SLDPEQRKYVETIISSGK 374

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+++NDILD + ++A  + L+     L +LL +V   +  +  +  + + +++   L 
Sbjct: 375 NLLSIINDILDFSKIEANRLDLDVVDFDLLELLEDVCGILGLQAQQKGLELTLVTGSFLP 434

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPED 733
            F+  D+ R+ QI   ++ NA+ F+  G  V+   A++  D        V++ G  IP +
Sbjct: 435 RFLRGDQARIRQILVNLVGNAVKFTHSGEVVVCAMAQEERDSQVTIRLLVRDTGIGIPRE 494

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           M K+VF  F+      +R   G GLGL+I        G  + + S++   +    
Sbjct: 495 MMKAVFEPFIQADGSTRRKYGGTGLGLAISNQLAKKMGSTIILESTNGEGSVFWF 549


>gi|298248600|ref|ZP_06972405.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297551259|gb|EFH85125.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1036

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 112/644 (17%), Positives = 244/644 (37%), Gaps = 54/644 (8%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            G  +++ E     ++L      ++VL ++L  LVW     G + +AN             
Sbjct: 417  GTCTDIEEQKRIEQQLKESEENWRVLAETLPHLVWAVRSDGRLEYANQHVSTYLGAFPDS 476

Query: 233  FQKAIGESRKLFKEEIKKRMISSSALEKNFCE----TVSTLEHGNNKSY--KIVRVLNSF 286
            F            +  + +      LE          +   + G  + +  +++ V +  
Sbjct: 477  FLGDEWRQFVHPDDYERVQAARRHVLETGEPYEGEYRLKERQTGRYRWFLARLMPVRDET 536

Query: 287  GEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVEL 338
            G+     G A D+ ++     QL  + E    L   +     +   +   ++ N+ + + 
Sbjct: 537  GQIVKRFGTATDIEEQKQAEQQLKESEENWRVLAEMVPQLVWVRRPDGPHEYTNQRWCDY 596

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS--------VYKSSETHKD 390
              + L  + +     +    L+  +   ++ N   W+  + +          ++++T K 
Sbjct: 597  TGLTLEHMRS-----DQWAHLQFVHPDDQESNRVHWQHALDTGAMFEHEVRLRNAQTGKY 651

Query: 391  TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             W L   + + V   +           ++  Q  +E       +     ++    G+ + 
Sbjct: 652  RWFLA--RAMPVRDEAGQIIKWFGTDTDIEEQKRIEAALRQSQERVNALMNSSIIGITI- 708

Query: 451  GPDG-RIKLSNPAFRSLWKTEENRLSPGT-HIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              +G +I  +N AF  +       L  G  +  ++              +L A   TS  
Sbjct: 709  -SEGEQIVDANDAFLHMTGYTREDLHEGRINWMHMTPPECLARTFEAHQELIAQQSTSPY 767

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            ++    +   +  S   +   ++ LP+         + +S R E             ++ 
Sbjct: 768  EK----EYVCQDGSRLPVLMGLVALPHQPHQTIGFVLDNSARKE------------LEQR 811

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+   S+ELR+PL  +   T L++       + K +  +  +      L  L+ ++L
Sbjct: 812  KDDFINMASHELRNPLAALKMQTQLVRKRLEKQSHHKAATALSKVEGPIKQLERLIAELL 871

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            D++ + AG ++     + L+ LL EV +++      + I   ++      S + DR RL 
Sbjct: 872  DVSRIQAGKLEYQQEPVDLDALLQEVTETLPQIYPSHRI---LVDGAVHTSLIGDRDRLG 928

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            Q+F+ +L NA+ +S    TV +  +  +      V+++G  IP +    +F RF   A  
Sbjct: 929  QVFANLLCNAIKYSPGAETVEMDLSASDDMVTIRVRDHGLGIPREQRDKIFERFYRVAGP 988

Query: 749  GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             Q+   G+G+GL IV   +  HGG +++ S     +T    +P+
Sbjct: 989  RQKAIPGLGMGLYIVSEIVKHHGGSITVDSEVGKGSTFTVTLPT 1032



 Score = 95.0 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/422 (13%), Positives = 131/422 (31%), Gaps = 50/422 (11%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G  +++ E     ++L       +VL +++  LVW     G   + N  +   T      
Sbjct: 288 GTDTDIEEQKRIEQQLKESRESLRVLAEAVPQLVWVARPDGQFEYTNQRWDDYTGLTHEP 347

Query: 233 FQKAIGESRKLFKEEIKK------RMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLN 284
            Q      R+    + ++      +   ++         +   + G  + +  + + V +
Sbjct: 348 GQSDRWAHRQCIHPDDREGNRAHCQHALATGDMFEHEHRIRNGQTGEYRWFLTRALPVKD 407

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFV 336
             G+     G   D+ ++  +  QL  + E    +   L   +     +  L++ N+   
Sbjct: 408 DTGQVLKWFGTCTDIEEQKRIEQQLKESEENWRVLAETLPHLVWAVRSDGRLEYANQHVS 467

Query: 337 E-LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             L     +FL                 +     +++  +     V ++ E ++  + L 
Sbjct: 468 TYLGAFPDSFLGDEW------------RQFVHPDDYERVQAARRHVLETGEPYEGEYRLK 515

Query: 396 N---GQTLHVIVTSNP---RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
               G+    +    P     G I        ++  Q   E +     +      + + +
Sbjct: 516 ERQTGRYRWFLARLMPVRDETGQIVKRFGTATDIEEQKQAEQQLKESEENWRVLAEMVPQ 575

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            V V  PDG  + +N  +          +      H++ +         ES+      A+
Sbjct: 576 LVWVRRPDGPHEYTNQRWCDYTGLTLEHMRSDQWAHLQFVHPDDQ----ESNRVHWQHAL 631

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEK 558
            T    E +      +           +P+ +      +   T  ++ +  R E AL + 
Sbjct: 632 DTGAMFEHEVRLRNAQTGKYRWFLARAMPVRDEAGQIIKWFGTDTDIEEQKRIEAALRQS 691

Query: 559 NE 560
            E
Sbjct: 692 QE 693



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 60/469 (12%), Positives = 138/469 (29%), Gaps = 82/469 (17%)

Query: 150 DCAIKIEG--RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
           D    + G  R   +    R+  +      + E     ++L      F+VL + +   VW
Sbjct: 136 DRDFFVAGVRRALQTRQLFRL--VQEKQQAIEEQKRTEQQLKESEENFRVLAEMVPQFVW 193

Query: 208 HRDQAGDILWANI------------------SYKKNTETEGIVFQKAIGESRKLFKEEIK 249
                G + + N                   +Y +    E     +A            +
Sbjct: 194 VTRSDGRVDYCNQRRRDYIGLTLEQLQSDCCAYLQAVHPEDWESSRAHW----------Q 243

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVND 303
             + +    E        T   G  + +  + + V +  G+     G   D+ ++  +  
Sbjct: 244 HALDTGDIYEHEQRMRQGTT--GEYRWFLARALPVRDDTGQIIKWFGTDTDIEEQKRIEQ 301

Query: 304 QLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           QL  + E L  L  A+         +   ++ N+ + +        L   P   +     
Sbjct: 302 QLKESRESLRVLAEAVPQLVWVARPDGQFEYTNQRWDDYTG-----LTHEPGQSDRW--- 353

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNP---RGGTI 413
            +  +     + +  + +      + +  +    + NGQT      +  + P     G +
Sbjct: 354 -AHRQCIHPDDREGNRAHCQHALATGDMFEHEHRIRNGQTGEYRWFLTRALPVKDDTGQV 412

Query: 414 W----MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
                   ++  Q  +E +     +      + L   V     DGR++ +N    +    
Sbjct: 413 LKWFGTCTDIEEQKRIEQQLKESEENWRVLAETLPHLVWAVRSDGRLEYANQHVSTYLGA 472

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-----S 524
                       +      R +   D ++   A      +  +  +G   L         
Sbjct: 473 FP---------DSFLGDEWRQFVHPDDYERVQAARRHVLETGEPYEGEYRLKERQTGRYR 523

Query: 525 VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                ++P+ +      +   T  ++ +  +AE+ L E  E  R   E+
Sbjct: 524 WFLARLMPVRDETGQIVKRFGTATDIEEQKQAEQQLKESEENWRVLAEM 572


>gi|58336427|ref|YP_193012.1| histidine kinase [Lactobacillus acidophilus NCFM]
 gi|58253744|gb|AAV41981.1| putative histidine kinase [Lactobacillus acidophilus NCFM]
          Length = 618

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 171/422 (40%), Gaps = 40/422 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K   H+ +G  +  V + SN   G +   F  L+V+++  + + ++  +     + 
Sbjct: 211 EEMQKQALHIADGDYSSQVKIYSNDELGQLGKAFNTLSVRIERSQEESDSERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    +    +E  +     I  +         ++   DL +
Sbjct: 271 HMSDGVLATDRHGNVSVVNHMVLTFLNAKEEDVIN-KPIAEVLG-----LKDTSSQDLIS 324

Query: 502 ---AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               I+ + D+  +          + +L  S   +      ++          E+     
Sbjct: 325 SQKEIVITLDEGTR---------DEMILHASFSLIKRVTGFVSGSVCVLHDVTEQQ---- 371

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K +  +  FV +VS+ELR+PLT++  + + L             +++E     + 
Sbjct: 372 -----KNENSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKD-PEIAPKFLEVTQQETG 425

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-------HENNIRIKV 671
            ++ ++ND+L L+ +D G+ K++   + LND +N +       +       H+    IK 
Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKR 485

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +      D  +++Q+   I++NA+ +S  G  + ++  ++    I S+ + G  IP
Sbjct: 486 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGIP 545

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P
Sbjct: 546 RKDLAKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605

Query: 790 SK 791
            +
Sbjct: 606 YE 607


>gi|294777585|ref|ZP_06743036.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294448653|gb|EFG17202.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 807

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 208/510 (40%), Gaps = 30/510 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     +  +   I  NL   I ++D++ ++        +L + ++         D +  
Sbjct: 305 ESEARLEKAYLQNIYKNLPAGIELYDKDGFMT-------DLNDKEMEIFGLRHKEDVIGL 357

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQ-TLHVIVTSNP------- 408
            L     LP+ L  K        + +       D ++  +   T+ +I    P       
Sbjct: 358 NLFDNPLLPQGLKDKLKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLYDALGN 417

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRS 465
               + +  + T   +  +K     +      ++   G A F     DG     N  +R+
Sbjct: 418 LINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDG--YAVNSWYRN 475

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSD 523
           + + E   L+    + +      R         +     +    + + L   GT      
Sbjct: 476 VGEKEGTPLNEIIKVHSHFHPDDRRMMLRFFDQVLIREASHLRRDVRILREDGTYTWTRV 535

Query: 524 SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +V+     P       +    ++T+    ER L    +   + D +K++F+ ++S+E+R+
Sbjct: 536 NVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRT 595

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL  ++       + QY+  +  ++ +LL L++DILDL+ +++G  +   
Sbjct: 596 PLNAIVGFSSLLTETEDMK---DRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVK 652

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S   +N L +E+ +S+  K+    + +            AD+ RL Q+ S  ++NA+ F+
Sbjct: 653 SDTDVNLLCSEIIRSLRMKVPA-GVELVFEECLPGCHVWADKNRLNQVISNFINNALKFT 711

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             GS  +    + +G   F V++ G  IP++  K+VF+RFV         G GLGLSI +
Sbjct: 712 FSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH--GTGLGLSICK 769

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           S +   GG + + S +   +      P +E
Sbjct: 770 SLVEQMGGTIGVESEEGEGSCFWFTYPYQE 799


>gi|148927534|ref|ZP_01811018.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7
           genomosp. GTL1]
 gi|147887117|gb|EDK72601.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7
           genomosp. GTL1]
          Length = 571

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/435 (21%), Positives = 190/435 (43%), Gaps = 27/435 (6%)

Query: 372 KTWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPR----GGT---IWMFENLTVQV 423
           + ++E + +V ++     +   +  +G    V ++++P     GG    I +  ++T + 
Sbjct: 2   EVFREAVQAVKENKPYEIEIKIYKKDGSDAWVFISNSPLFNEVGGIERQIGVMVDITERK 61

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
               +   L  V  +T    + GV +   +G+++  N AF  +     N +       ++
Sbjct: 62  KTVEELTMLSLVASKT----TSGVVINDSEGKVEWVNSAFEQITGYSLNDVKNKHLGDSL 117

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---ML 540
               +         +L      SF+ +    +   + L  SV+  S+I   N +    + 
Sbjct: 118 KGELTDVSIIQKARELSEQ-KQSFEVDLLIYRKDGQPLWISVIN-SVIMGNNGRVDKYIE 175

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T +++T   +AE  L    E   +    K+ F+  +S+E+R+PL  +IG + +L      
Sbjct: 176 TIIDITAKKKAELELIAAKEEALQLSRAKDMFMGVMSHEIRTPLNAVIGMSHILLN---D 232

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +    Q + +  ++ S+  L+ L+ND+LD   ++ G ++L  + + + D++  +  S+  
Sbjct: 233 NPLESQKENLSILNFSAENLMTLINDVLDFTKIETGNVELEIARLDIRDMIQSIIGSMKY 292

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARD 715
           K +E  I +    D  +   V  DR RL+QI   ++SN++ F+S+G       +++  +D
Sbjct: 293 KANEKGIYLTKSIDEAVPDIVMGDRARLVQILLNLVSNSVKFTSEGGVNIDLKVIEQTKD 352

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                F V + G  I E+   ++F  F            G GLGL+I +  I LH   ++
Sbjct: 353 TVRIRFGVSDTGIGIAENKLNTIFESFKQAEADTTRHYGGTGLGLAISKRLIQLHDSRIN 412

Query: 774 ISSSDEGVTTINCRI 788
           + S     +T    I
Sbjct: 413 VDSVLGQGSTFWFTI 427



 Score = 44.9 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           + G+ +D+++     ++LT    +    T  + I D    +++ N +F ++    L  + 
Sbjct: 50  QIGVMVDITERKKTVEELTMLSLVASKTTSGVVINDSEGKVEWVNSAFEQITGYSLNDVK 109

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                D L   L   + +         K    S  K S       +  +GQ L + V ++
Sbjct: 110 NKHLGDSLKGELTDVSII--------QKARELSEQKQSFEVDLLIYRKDGQPLWISVINS 161

Query: 408 PRGGT-------IWMFENLTVQVDLETKYNTLVK 434
              G        I    ++T +   E +     +
Sbjct: 162 VIMGNNGRVDKYIETIIDITAKKKAELELIAAKE 195


>gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1202

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 115/683 (16%), Positives = 236/683 (34%), Gaps = 111/683 (16%)

Query: 188  LSNHISVFKVLFDSLDFLVWHRDQAGDILWANI------SYKK----NTETEGIVFQKAI 237
            L    + ++ +F+     +        +L  N        Y +    N   E +     +
Sbjct: 396  LREQEARYQSVFEQAAVGLARAKLDNRLLQVNQKLCDILGYSRDELLNLRYEDLTHPDDL 455

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
                 L ++ +  +  S +  ++   +  S +      S          G  G   D+S 
Sbjct: 456  ERELPLMRQLLAGKTNSYTLEKRYIRKDNSLVWATLAVSLDYNSAGQPVGLIGAVEDISD 515

Query: 298  EITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL------- 346
                 + L    E L         A+ +   +  +   NR+  +++ +    +       
Sbjct: 516  RKQAEEALKEREERLRAFFDASIDAVLLTSPDGSVLTANRAAQDMFGLTEQEIIAVGCDG 575

Query: 347  ---ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                ++P    LLE      +   +L ++    ++F    SS  ++D      G TL   
Sbjct: 576  LLDTSDPLLPILLEERTRTGRTRGELRYRRSDGSLFEAEMSSGLYQD----AQGMTL--- 628

Query: 404  VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI--------DHLSEGVAVFGPDGR 455
                    T  +  ++T +   E      + +Q + I        +   EG+ +      
Sbjct: 629  --------TSMVIRDITERKQAEEARLRSLDLQNKLIIATKDILDEQTIEGLLMTVAKAA 680

Query: 456  IKLSNPA--------------FRSLWKTEENRLSPGTHI--------------------- 480
              ++N                F         R     H+                     
Sbjct: 681  QTVTNAQVAASGYQVGDKRFDFAVHSPHAIARFPNSEHLSGRCGGIFKKLFDSRYPGIIR 740

Query: 481  ---RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI---IPLP 534
                 +  T   +   SD   L   +I +  + +   +G + + + +   ++      L 
Sbjct: 741  LSEMELPETPREWNLASDHPPLRGLLIAALTNTKGKPEGLISVSTKANGTFTAEDETLLG 800

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                + +      S R E           +A+  K+ F+ ++S+E+R+P+  +IG T+L 
Sbjct: 801  QLAGVASLGLQHLSARIEAE---------QANRAKSEFLANMSHEIRTPMNGVIGLTELA 851

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +       K  +Y++ +  S   LL+++NDILDL+ ++AG + L      L + L   
Sbjct: 852  LMTV---EEPKAREYLQMVKKSGLTLLDIINDILDLSKIEAGKVMLEKKPFSLRESLEAT 908

Query: 655  KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + +        +++ +     +  + + DR RL Q+ + ++ NA+ FS KG  V +   
Sbjct: 909  LKPLDVVAQGKGLKVSLQVAPDVPDALMGDRGRLRQVLTNLVGNAVKFSHKG-WVRVSVG 967

Query: 714  RDNGDF-------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESF 764
             D+G+         F V + G  IP D   ++F+ F         +  G GLGLSI +  
Sbjct: 968  LDDGNVSSEQATISFEVADEGIGIPADKLSTIFDSFAQVDSSAHVKYGGTGLGLSISKHL 1027

Query: 765  INLHGGHVSISSSDEGVTTINCR 787
            + L GG +   S     +T +  
Sbjct: 1028 VELMGGTIQARSEMGIGSTFSFT 1050



 Score = 75.0 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 59/398 (14%), Positives = 121/398 (30%), Gaps = 44/398 (11%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-------EGIV 232
                 +      + +++L ++   ++   DQ     +AN + +              + 
Sbjct: 269 SVAGAIRSFLQADAGYRLLVENSSDVIVRFDQDLRCTYANPAIESAFGQPARFYIGRSLP 328

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---IVRVLNSFGEA 289
                       +  + K +         F   V   E G  + +    +    ++    
Sbjct: 329 EAGIDDAGFAGLETILHKTLSEGVEKTAEF---VRQTESG-RQVFHCRCMPERSSNGQID 384

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            + +       + +Q      +     V +A    +  L   N+   ++           
Sbjct: 385 SVLVSCRDITVLREQEARYQSVFEQAAVGLARAKLDNRLLQVNQKLCDILGY-------- 436

Query: 350 PSNDELLEFLRSANKLPEQLNWKT-WKENIFSVYKSSETHKDTWHLPNGQ----TLHVIV 404
            S DELL         P+ L  +      + +   +S T +  +   +      TL V +
Sbjct: 437 -SRDELLNLRYEDLTHPDDLERELPLMRQLLAGKTNSYTLEKRYIRKDNSLVWATLAVSL 495

Query: 405 TSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
             N  G   G I   E+++ +   E       +      D   + V +  PDG +  +N 
Sbjct: 496 DYNSAGQPVGLIGAVEDISDRKQAEEALKEREERLRAFFDASIDAVLLTSPDGSVLTANR 555

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG-WDLFAAIITSFDDERKSLQGTLEL 520
           A + ++   E  +        IA  C    + SD    +     T     R  L+     
Sbjct: 556 AAQDMFGLTEQEI--------IAVGCDGLLDTSDPLLPILLEERTRTGRTRGELRYRRSD 607

Query: 521 LSDSVLEYSIIPLPNAQTM----LTFVNVTDSVRAERA 554
            S    E S     +AQ M    +   ++T+  +AE A
Sbjct: 608 GSLFEAEMSSGLYQDAQGMTLTSMVIRDITERKQAEEA 645


>gi|316935268|ref|YP_004110250.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315602982|gb|ADU45517.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 1157

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/540 (18%), Positives = 195/540 (36%), Gaps = 58/540 (10%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++    +   +    I  +   AI     +  +   N++   L+          P+ + +
Sbjct: 349 ARRAEHDIARSRLAAIFESSNDAIIAKSVDGTVVDWNKAAERLFGYSAEEAIGRPTTELI 408

Query: 356 LEFLRSANKLPEQLNWKTWKE-NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---- 410
           +     +    E   +   ++    S +++    +      NG  + V V+ +P      
Sbjct: 409 VP---ESLWDEENRIFADIRDGQKVSHFRTKRNKR------NGDPVDVAVSVSPIRCEDG 459

Query: 411 ---GTIWMFENLTVQVDLETKYNTL------------------VKVQGETIDHLSEGVAV 449
              G      ++T  V  E K   L                  + +Q   ++  +  V  
Sbjct: 460 SLIGIATAARDITDLVAAEHKIRNLNAWLERQVAERTAQLEKTLTLQSAILERAAYAVIA 519

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRL------SPGTHIRNIAATCSRYYNES----DGWDL 499
               G I L NPA   +       L              +AA       E         +
Sbjct: 520 TDVTGTITLFNPAAERMLGYAAEDLIGRATAMLFHDPDELAARADALRQEGVDVGSNLGV 579

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-----NAQTMLTFVNVTDSVRAERA 554
             A +   D +               +  ++  L      +   +   V++T+ ++ E  
Sbjct: 580 LRARLARSDPDTAVWTYINAEGGRIPVRLTLSRLRTKDGTDLGVLGIAVDLTEQLKYENE 639

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L     +  KA   K +F+ ++S+E+R+PL  IIG+ DL+   +  +L++++   V  I 
Sbjct: 640 LKAARASAEKAGAAKANFLANMSHEIRTPLNGIIGYADLVLEDQTLALDTRRQ--VIRIF 697

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S  L  +++DILD + ++A  + L    + +  L++     I  K  +  + ++V + 
Sbjct: 698 EASDSLRVIIDDILDFSKIEALGVTLESKPLYVEQLIDNCMSIIQRKAEKKGLELRVDAQ 757

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI 730
                 + D  RL Q+   +L+NA+ F+  GS  +    L    D      +V + G  I
Sbjct: 758 EIPAVLMGDGARLRQVLLNLLNNAVKFTDAGSVELNVACLSRVGDRARLRITVTDTGIGI 817

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K +F RF         +  G GLGL+I +  +   GG + I S+    +T    I
Sbjct: 818 SAQDQKGLFKRFSQADETISRKYGGTGLGLAISQRIVQAMGGEIGIDSAPGRGSTFYFEI 877



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 92/323 (28%), Gaps = 55/323 (17%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISV----FKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           L+L  + + L    +  K       +       +F+S +  +  +   G ++  N + ++
Sbjct: 331 LALGFLLTSLVNLQISYKARRAEHDIARSRLAAIFESSNDAIIAKSVDGTVVDWNKAAER 390

Query: 225 NTETEGIVFQKAIGESRKLF--KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                G   ++AIG         E +        A  ++  +        N ++   V V
Sbjct: 391 LF---GYSAEEAIGRPTTELIVPESLWDEENRIFADIRDGQKVSHFRTKRNKRNGDPVDV 447

Query: 283 LNS-----------FGEAGIAIDVS----------------------KEITVNDQLTHTY 309
             S            G A  A D++                      +   +   LT   
Sbjct: 448 AVSVSPIRCEDGSLIGIATAARDITDLVAAEHKIRNLNAWLERQVAERTAQLEKTLTLQS 507

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKL 365
            IL     A+   D    +   N +   +       L    +     +      R+    
Sbjct: 508 AILERAAYAVIATDVTGTITLFNPAAERMLGYAAEDLIGRATAMLFHDPDELAARADALR 567

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVT----SNPRG---GTIWMF 416
            E ++  +    + +    S+     W   N  G  + V +T        G   G + + 
Sbjct: 568 QEGVDVGSNLGVLRARLARSDPDTAVWTYINAEGGRIPVRLTLSRLRTKDGTDLGVLGIA 627

Query: 417 ENLTVQVDLETKYNTLVKVQGET 439
            +LT Q+  E +         + 
Sbjct: 628 VDLTEQLKYENELKAARASAEKA 650


>gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris]
          Length = 1364

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/541 (18%), Positives = 201/541 (37%), Gaps = 63/541 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  +  Q+     ++ + + AI     +  +   N +   ++      +A       LL
Sbjct: 342 REEVLRKQME-LAALVSHSSEAIVAETPDGEITHWNPAAEAMFGYPAD-VAIGQDLTTLL 399

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------- 409
                    P+        ++      +    +   H  +G  + V+ +  P        
Sbjct: 400 S--------PQPYAMPQIDQDEAPPVAALSAAQTMRHR-DGHQVFVLASKAPIIEHDNAV 450

Query: 410 GGTIWMFENLTVQVDLETK---YNTLVK---------------VQGETIDHLSEGVAVFG 451
            G    F +++ +V    +    N  ++               +Q   + H    +    
Sbjct: 451 SGHSHFFRDISERVRSHQRIVDLNASLEHQVAERTSELVQFSVLQRAILAHAGYAIIATD 510

Query: 452 PDGRIKLSNPAFRSLWKTEENRL------SPGTHIRNIAATCSRYYNESDGW--DLFAAI 503
            +G + + NPA   L     + +      S       +     R   ++         A+
Sbjct: 511 SNGFVTMFNPAAEKLLGYSADDVIGRRKASQFIEADELQERALRLAEQTGTPVAGTLEAV 570

Query: 504 ITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQT---MLTFVNVTDSVRAERAL 555
                  R        +  D      +L  S +   N Q    +   V++T+    E+ L
Sbjct: 571 AALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTLRDDNDQVIGYLGVAVDLTEQKLHEKQL 630

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               +A R A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L       V  I  
Sbjct: 631 RLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---LPGAAQDMVTKIDR 687

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-D 674
           S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +    + + V    
Sbjct: 688 SARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLP 747

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSS 729
            +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD      +FSV++ G  
Sbjct: 748 RECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKIKLLFSVRDTGIG 807

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++    +F+ F+       RR  G GLGL+I    I L GG + + S     +     
Sbjct: 808 ISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEVESVPGRGSEFYFV 867

Query: 788 I 788
           I
Sbjct: 868 I 868



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 88/304 (28%), Gaps = 50/304 (16%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L+ +++         L       +      G+I   N + +        V   AIG+   
Sbjct: 340 LRREEVLRKQMELAALVSHSSEAIVAETPDGEITHWNPAAEAMFGYPADV---AIGQDLT 396

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS-----------FGEAGI 291
                    M      E      +S  +   ++    V VL S            G +  
Sbjct: 397 TLLSPQPYAMPQIDQDEAPPVAALSAAQTMRHRDGHQVFVLASKAPIIEHDNAVSGHSHF 456

Query: 292 AIDVSKEITVNDQLTHT----------------------YEILHNLTVAIAIFDQNRYLQ 329
             D+S+ +  + ++                           IL +   AI   D N ++ 
Sbjct: 457 FRDISERVRSHQRIVDLNASLEHQVAERTSELVQFSVLQRAILAHAGYAIIATDSNGFVT 516

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLE-------FLRSANKLPEQLNWKTWKENIFSVY 382
             N +  +L       +       + +E        LR A +    +          +  
Sbjct: 517 MFNPAAEKLLGYSADDVIGRRKASQFIEADELQERALRLAEQTGTPVAGTLEAVAALTSL 576

Query: 383 KSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             S+T + T+   +G+ L V++T       ++   G + +  +LT Q   E +    +  
Sbjct: 577 GRSDTSEWTYVSQDGRRLPVLLTLSTLRDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDA 636

Query: 436 QGET 439
               
Sbjct: 637 ARSA 640


>gi|218530077|ref|YP_002420893.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218522380|gb|ACK82965.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1125

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 111/704 (15%), Positives = 226/704 (32%), Gaps = 74/704 (10%)

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
             LR   +        + D       R       LR +    I ++  E   +       
Sbjct: 143 AALRDLAEIVTAQMRLRRDNLAFASERA------LRQIHESTIRAQGVEIERRASA---- 192

Query: 192 ISVFKVLFDSL-DFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
            +    + + +     W  +  +G  +++  S  +    +            +L     +
Sbjct: 193 -NSLLTMAEQIAQVGHWRLNFASGQPIYS-ESLLRIAGLDAAAPTTRHPGLAQLCHPADR 250

Query: 250 KRMISSSAL---EKNFCETVSTLEHGNNKSYKIV--------RVLNSFGEAGIAIDVSKE 298
            R+ +  A         E  +     +     ++            + G  GI +DV+  
Sbjct: 251 GRVEAIIAAAIAGGQDFEVETRFVRPDKTIRDVMVRGTCKTDEAGRTIGLFGILMDVTDR 310

Query: 299 ITVNDQLTHTYEILHNLTVAIAIF----DQN-RYLQFHNRSFVELWEIDLAFLATNPSND 353
           + +  ++  +     +L  A+ +     D +     + N  F + +          P   
Sbjct: 311 VQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRFEDYYG---------PIGA 361

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFS-------VYKSSETHKDTWHLPNGQTLHVIVTS 406
             ++ L   +          W+    S           +      WH  +   +      
Sbjct: 362 ARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQARDGSYRWHKMSITPIRNAGDP 421

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID---------HLSEGVAVFGPDGRIK 457
                 I    ++   V          ++ G  ++         +L  G+ V  P+    
Sbjct: 422 AGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTFDWNLRTGITVLSPESVRL 481

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              P             +   H  ++    +R ++  D    F A          +   T
Sbjct: 482 YGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSRFIAEYRVGQRWLYTSGRT 541

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L            + L   +       +  +    RA T + E        K+ F+  +S
Sbjct: 542 LYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAATVEAERA---SAAKSEFLAAMS 598

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+G+ DLL   +      ++   +E I  S   LL +VND+LD++ ++AG 
Sbjct: 599 HEIRTPLNGILGYADLLLDRRDHDPEDQRR--LELIRVSGESLLTVVNDVLDVSKIEAGQ 656

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696
           ++L+     L  L+ +    +     ++ + ++   D  L +  V D  RL Q+   +L+
Sbjct: 657 LELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPASVVGDANRLRQVLFNLLN 716

Query: 697 NAMDFSSKGSTVILKAARDN----------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           NA+ F+  GS V L A  +               F + + G  I       +F  F    
Sbjct: 717 NAVKFTPAGSVV-LTARYEGSVPGADGGTAEALRFEISDTGIGIAPSQRHRLFKPFSQVD 775

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               RR  G GLGL+I    + + GG + + S +   +T    +
Sbjct: 776 GSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFTL 819


>gi|3955036|emb|CAA65047.1| putative sensor kinase [Synechocystis sp. PCC 6803]
          Length = 1138

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/638 (18%), Positives = 226/638 (35%), Gaps = 83/638 (13%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
             I  E+  +    K L    + F+++ D+   ++W  DQ   + + N S+ +        
Sbjct: 437  AIRFEITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDKKMTFVNQSWLE-------- 488

Query: 233  FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV---RVLNSFGEA 289
                      L +E     +      +K     V +   G+ + +++    R ++     
Sbjct: 489  -----FRGATLAEESGNGYLEGIHPDDKGHYLGVYSQAFGDPRRFELEYRYRRVDQQYRW 543

Query: 290  GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
             + + V + +     + +    L        I D+        ++   L +     L   
Sbjct: 544  IVNVGVPRYLEDGKFMGYVGSCLD-------ITDRK-------QAQDILQKKLNQILLMR 589

Query: 350  PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
              + E+   L+          ++T    + +V+  S      +      TL V V +   
Sbjct: 590  KISQEIRRSLQPTLI------FQTAARQVGNVFAVSRCLIHNYSEA--TTLQVPVVAEYL 641

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            GG       L  ++ ++  Y+  +      +       AV   D          + L  T
Sbjct: 642  GGQFTSL--LAGEIAVQQAYDPTIIQGDRAM-------AVVDLD----------QDLNST 682

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                      +++  A  + Y  +++G           D +R      +ELL     +  
Sbjct: 683  HTKAFYQRFQVKSFLAVRTSYQGKANGIIALHQ----CDRQRVWTADEIELLEAIAEQMG 738

Query: 530  IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            I     A          +  +    L +   A   A+  K  F+  +S+E+R+P+  +IG
Sbjct: 739  IALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIG 798

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             ++LL  +    LN +Q  YV+ I  S   LL ++NDILD + ++A  + L      L  
Sbjct: 799  MSELLIMT---DLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLETQAFELRP 855

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+  V +         ++ +    D +  +  + D+ RL QI S ++ NA+ F+ KG  V
Sbjct: 856  LIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKFTEKGEVV 915

Query: 709  ----------------ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
                            IL     +    F++++ G  IP D    +F  F        R 
Sbjct: 916  LTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRK 975

Query: 752  -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGL I +    + GG ++++S     +     I
Sbjct: 976  YGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCI 1013



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 86/294 (29%), Gaps = 41/294 (13%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS----------- 351
            +L      L    + +AI D    + + N  FVE+       L  N             
Sbjct: 329 QELAVQKTALDEAAI-VAITDTEGVITYVNDKFVEVSGYSREELIGNTHRLVSSGYHSPE 387

Query: 352 -NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              +  + +R+          K W   I +  K+     +T+ + +     +    NP  
Sbjct: 388 FFQQFWQTIRAG---------KVWHGQINNRAKAG----NTYWVDSTVVPFLDDNGNPYQ 434

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
                FE +T     E              D     + V   D ++   N ++       
Sbjct: 435 YLAIRFE-ITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDKKMTFVNQSWLEFRGAT 493

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSDSVLE 527
               S   ++  I      +Y               F+ E   R+  Q    +++  V  
Sbjct: 494 LAEESGNGYLEGIHPDDKGHYLGVYSQAF--GDPRRFELEYRYRRVDQQYRWIVNVGVPR 551

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           Y    L + + M    +  D    ++A     + L +   ++      +S E+R
Sbjct: 552 Y----LEDGKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRK-----ISQEIR 596


>gi|60680665|ref|YP_210809.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
 gi|60492099|emb|CAH06862.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
          Length = 637

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/511 (19%), Positives = 207/511 (40%), Gaps = 34/511 (6%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D      + D       +L    +A   +D           +  +  +  A +       
Sbjct: 12  DTGDLENLKDNYQKITSVLAGHQIAFWEYDIPTGECNFTDEYFHILGLKEAGII----FR 67

Query: 354 ELLEFLRSANKLPEQ-LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT------- 405
           ++ +F R A+  PE  ++++T    +                  G+T+ +          
Sbjct: 68  DINDFYRFAH--PEDVISYQTTFARMLESETKISQIVVRCVGRRGETIWLEDNFIAYKKN 125

Query: 406 -SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             N     I    N+T + + E +   L +   + I+ L E          I + +  F 
Sbjct: 126 KENGSDKIIAYTANITSRCEKEVQIRQLEERNRKIIEALPE---------FIFIFDDNFF 176

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLS 522
                          +  +     R    S+  DLF + I       + K ++  +++ +
Sbjct: 177 ITDVLMAPDTELLHPVEVLTGADGRSIYSSEVSDLFISSIHECLKSGKLKEIEYPVDVEA 236

Query: 523 DS-VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                +  I P    + +    ++ D +R  + L E  +   +AD +K+ F+ ++S+E+R
Sbjct: 237 GRHFFQARIAPFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIR 296

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GF++++    L     ++ +Y+  I  +S +LL L+NDILDL+ +++G  +++
Sbjct: 297 TPLNAIVGFSEIIA---LTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMH 353

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                ++ L++EV +    KM +  +++ VI   +      DR R+ Q+    LSNA+  
Sbjct: 354 CQLTEMSGLVDEVDKVHRLKM-KKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKN 412

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           + +GS +     ++       V + G  I ++    +F RF       Q  G GLGL I 
Sbjct: 413 TIEGS-ITFGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ--GTGLGLPIC 469

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +S +   GG + + S     +T    +P+++
Sbjct: 470 KSIVERLGGRIEVESELGQGSTFILYLPNRQ 500


>gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7822]
 gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822]
          Length = 2003

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 5/255 (1%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             +T           +  R      E    A+  K+ F+ ++S+ELR+PL  I+G+  + K
Sbjct: 1516 ERTQQLEEKNLQLEQEVRERQRAEEIAEAANRAKSEFLANMSHELRTPLNGILGYAQICK 1575

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              K  +LN +Q   +E I      LL L+NDILD++ ++A  M+L  +     D L  + 
Sbjct: 1576 KDK--NLNEQQKNRIEIIHQCGEHLLTLINDILDISKIEARKMELCPTDFYFGDFLRGIL 1633

Query: 656  QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +    K  +  I +       L   V  D +RL QI   +L+NA+ F+ KGS +  K + 
Sbjct: 1634 EICQIKAEQKGISLIFQPLSSLPKIVQVDEKRLRQILINLLNNAVKFTEKGS-ITFKVSY 1692

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              G   F V++ G  I  +  + +F  F     +  +  G GLGLSI      + GG ++
Sbjct: 1693 QKGKVNFQVEDTGIGIAPNQLEEIFLPFQQVGEYSRKTEGTGLGLSISRQLAQMMGGTIT 1752

Query: 774  ISSSDEGVTTINCRI 788
            + SS    +  +  +
Sbjct: 1753 VKSSLGKGSIFSLDL 1767


>gi|156742601|ref|YP_001432730.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156233929|gb|ABU58712.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 641

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 160/379 (42%), Gaps = 25/379 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC----SRY 490
            +   ++ +S+ V V   D RI   N A + +       +  G  IR   +       RY
Sbjct: 244 ARDIVLESMSQSVIVLDDDNRIVDINRAAQHVIGCTAAEV-IGKPIRQALSRWPQVLDRY 302

Query: 491 YNESDGWDLFAAIITS----FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           YN  +  +     I       D     L+     L   ++ +  I        +      
Sbjct: 303 YNIVELNEEVQLEIEGRPLVLDVLISPLRDRNGRLRGRLIVWHDITRLKQIEEVLRQRND 362

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    ++ L    +    A   K++F+ H+S+E+R+PL+ I+G+TDL++        S  
Sbjct: 363 ELTALQQTLMVARDQAEAAHRAKSAFLAHMSHEVRTPLSAILGYTDLIRLDLTRRGQSVY 422

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I AS+  LL ++N+ILDL+ +DAG M L      +  L++ V Q+       N 
Sbjct: 423 QEELEAIHASAQHLLTMINNILDLSKIDAGRMPLYIELFSIEALVHNVTQTARPLAARNG 482

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----------- 715
             + VI         +D+ ++ Q+   +LSNA  F+  G+ + L+  R+           
Sbjct: 483 NSLTVIRAPDADLMTSDKTKIRQVLLNLLSNAAKFTENGA-ISLRIWRELSLSPAMKAID 541

Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
                 +F + + G  I  +    +F  F    +A   +  G GLGL+I   F  L GG 
Sbjct: 542 DGADWIVFEIADTGIGIAPEHLPLLFQDFSRIEDADHQRYGGTGLGLAISRQFCRLMGGD 601

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++++S+    TT   R+P+
Sbjct: 602 ITVASAPGKGTTFTVRLPA 620



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 76/218 (34%), Gaps = 36/218 (16%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L +++ ++ + D +  +   NR+   +     A +   P    L               
Sbjct: 248 VLESMSQSVIVLDDDNRIVDINRAAQHVIGCTAAEVIGKPIRQALSR------------- 294

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQ--TLHVIVTSNPR-----GGTIWMFENLTVQV 423
              W + +   Y   E +++      G+   L V+++          G + ++ ++T   
Sbjct: 295 ---WPQVLDRYYNIVELNEEVQLEIEGRPLVLDVLISPLRDRNGRLRGRLIVWHDITRLK 351

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +E     +++ + + +  L + + V         +     +  + +   L+  +H    
Sbjct: 352 QIEE----VLRQRNDELTALQQTLMV---------ARDQAEAAHRAKSAFLAHMSHEVRT 398

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +    Y +    DL     + + +E +++  + + L
Sbjct: 399 PLSAILGYTDLIRLDLTRRGQSVYQEELEAIHASAQHL 436


>gi|288556019|ref|YP_003427954.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547179|gb|ADC51062.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 599

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 171/395 (43%), Gaps = 28/395 (7%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           +T   I+T +  G     F  +  +++      N   +     +  +++GV      G++
Sbjct: 219 KTKVPILTHDEIGQLAMAFNRMGRELNRNIHALNQEKEQLSRILVSMADGVITLDRKGQV 278

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            ++NP      ++             +     + +            + S + E + ++ 
Sbjct: 279 IVTNPPAERFMQSWFYEQGINDDSSVLPEAVEQLFQR----------VVSVEKE-QMIEI 327

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            ++  S ++L   + PL + + +   V V   +  ER          + D+++  F+ +V
Sbjct: 328 DVQGRSWAIL---MTPLYDREYVRGAVAVIRDMTEER----------RHDKLRKDFIANV 374

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+P++ + G+++ +     GS   K  ++ + I   S  +  LVN++LDLA ++AG
Sbjct: 375 SHELRTPVSMLQGYSEAIIDDIAGSEEDK-KEFAKIIYDESLRMGRLVNELLDLARMEAG 433

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L+   + L    + + +       +  + +++       +   D  R+ Q+ + ++ 
Sbjct: 434 HIELHMEAVELGAFSDRIVRKFQGYAKDEGVALRLDHVEDGYTNSFDPDRIEQVLTNLIH 493

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           NA+  + +   V +K   +     F V + GS IPE+    VF RF          R G 
Sbjct: 494 NAIRHTGENGRVTVKVRSNEYGVKFDVIDTGSGIPEEDLPYVFERFYKADKARTRARGGT 553

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I ++ ++ H G +S+ S  +  TT +  IP
Sbjct: 554 GLGLAIAKNIVDAHKGQISVHSKIDEGTTFSFFIP 588


>gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1521

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 128/700 (18%), Positives = 260/700 (37%), Gaps = 56/700 (8%)

Query: 123  HYIKLSKATEKLRKEGQS--FDLVAETQNDCAI--KIEGRVSGSCAFLRILSLDGIYSEL 178
                  +  + L + G+   F+++   +    +   I  R+S           +     +
Sbjct: 697  DPKDRDRLVQALIQHGEVRQFEILIRRKGGGTLWVSINSRLSRGLG----NEPELFEGSI 752

Query: 179  AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN-ISYKKNTETEGIVFQKAI 237
             + T + K++   + + +   D     ++  D++G  ++ N          +  +    +
Sbjct: 753  IDITGR-KRVEEALRLTQFSVDMAPVSIYWIDRSGRYVYVNDHGCSSLGYGQDDLLAMTV 811

Query: 238  GESRKLFKEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIV----RVLNSFGEAGIA 292
             +   LF  +      ++  LE     ETV     G     +IV               A
Sbjct: 812  SDICPLFSPDTWAEYWNARRLEDIRRFETVHRCRDGRELPVEIVSHYKVYGGKEYLFVYA 871

Query: 293  IDVSKEITVNDQLTHTYEILH-----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             D+++       L  + E+L+     +LT      D +            L+ ++     
Sbjct: 872  YDLTERHQAEQALRWSRELLNEVQRISLTGGWE-HDLDTGANHWTDGQFRLFGLEPD--G 928

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVT 405
            + P    +L     +   P  +  + W     S+ +     +  +     +G    ++  
Sbjct: 929  SAPDIGHILNRHIHSGDTPRLV--EAW----TSLLRDMRPVEVEFRCLRDDGSQGVLVGV 982

Query: 406  SNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIK 457
            + P    RG    +F    ++T +     +     +     +D +   + V   D   + 
Sbjct: 983  AIPETDGRGRLRRVFGSTRDVTQERQAARELAQSHERLLTILDGIDANIYVSELDSHEVL 1042

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              N   +  + T          +R  +  C      +      A + T   +    + G 
Sbjct: 1043 FMNAHIQETYGTSGQDSLCHEILRGESRQCQVCPKPALLNGRGAPVGTLVREWHSQITGR 1102

Query: 518  LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              L  D  +E+    L +   M    ++TD    E+ L         A   KN F+ ++S
Sbjct: 1103 WYLNHDRAIEWLEGRLVH---MHMATDITDLKVMEQELKRAMAKAEAASLAKNEFLANMS 1159

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +E+R+PL  ++G   LL+ + LG    +Q +++E   +S   LL ++NDILD++ +++G 
Sbjct: 1160 HEIRTPLNGLLGMLQLLQLTILGG---EQREFLEIALSSGRSLLQILNDILDISKIESGK 1216

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
            ++L+   + L ++   V      +     I + ++ D  L   F+AD+ RL QI   ++ 
Sbjct: 1217 LELDDQELDLGEVAESVVAVFRHQARMRGIEVALVMDKTLPRHFLADKVRLRQILFNLVG 1276

Query: 697  NAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
            NA  F+  GS V+++A               FSV + G  IP+D    +F+ F       
Sbjct: 1277 NATKFTESGS-VLVEAYPLAHPMPDGRAQLFFSVSDTGIGIPDDKMDQIFDPFTQVDGSF 1335

Query: 749  -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              + +G GLGL IV   + L GG +++ S     TT+   
Sbjct: 1336 TRKYQGTGLGLGIVRRLVALMGGTIAVDSELGAGTTVVFT 1375



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 76/508 (14%), Positives = 161/508 (31%), Gaps = 69/508 (13%)

Query: 60  SFLSEICDQLSKYH----SLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
               E+  +L +      +LL        ++        I G +  R+D+   +   LS 
Sbjct: 258 GDRREVEQRLRRNERALRALLDATVEDVGLYGTDGTISIINGNMAARLDLDPEEAAGLSL 317

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQS-----------FDLVAETQNDCAIKIEGRVSGSCA 164
            + L         ++  ++ + G+            FDL          +++G    +  
Sbjct: 318 FDHLPQERVESWRESFRQVAQTGRPVSRKGHLKGRHFDLTLYPVFGQDGEVDGVAIFAK- 376

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
                       +  E T   + L    + ++ + ++ +  +   D  G I +AN +   
Sbjct: 377 ------------DTTERTRAEEALRESEARYRRMLETANEGILSMDADGRIAFANQT--- 421

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNKSYKI- 279
             +  G  F+  IG +        +     R   +        E       G     ++ 
Sbjct: 422 MVDFMGHDFEDIIGATLPDLMPPDEHSEYVRRAQAIKSGGVRYEQRFVRRDGTRTWGRVS 481

Query: 280 -----VRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
                  V    G   +  D+++    E ++ +       I+      I     N  ++F
Sbjct: 482 ATPIRTDVGEYAGAFVMIADITEAKMVERSLRESEARYRRIVETANEGIISIGPNGNIRF 541

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N+    +    +  L   P          SA   PE  +    +E++    +      +
Sbjct: 542 ANKVLCRMLGYAVYELLGKPV---------SALLYPE--DIPRLEEHLVRRRQGLSDQFE 590

Query: 391 TWHL-PNGQTLHVIVTSNP----RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             +   +G ++  +V+++P     G   G + M  +++ +   E +     +      ++
Sbjct: 591 QRYRCKDGSSVWALVSASPILGDDGRYQGVLAMAADISGRKRAEAELVRSERNYRNLFEN 650

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             EG+    P GR    NPA   L   +  +      I +I  T   YY+  D   L  A
Sbjct: 651 SVEGLYQSTPQGRFVSVNPALVRLTGYDSPQ-EFMDAITDI--TTQFYYDPKDRDRLVQA 707

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSI 530
           +I     E +  +  +       L  SI
Sbjct: 708 LIQ--HGEVRQFEILIRRKGGGTLWVSI 733



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/470 (12%), Positives = 132/470 (28%), Gaps = 48/470 (10%)

Query: 116 ENWLKFHHYIKLSKATEKLRKE-GQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL----- 169
           + ++       + +A + +R+   +                +G      A  R L     
Sbjct: 186 DQFVTPQTLPLVLEALDGVRRAVARGERSPLARMELEVQHADGSAVWVEAVARPLLDHAG 245

Query: 170 ---SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
                 G    + +     ++L  +    + L D+    V      G I   N       
Sbjct: 246 ACVGFIGSTRSIGDRREVEQRLRRNERALRALLDATVEDVGLYGTDGTISIIN---GNMA 302

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET---VSTLEHGNNKSYKIVRVL 283
               +  ++A G    LF    ++R+ S     +   +T   VS   H   + + +    
Sbjct: 303 ARLDLDPEEAAG--LSLFDHLPQERVESWRESFRQVAQTGRPVSRKGHLKGRHFDLTLYP 360

Query: 284 NSF------GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
                    G A  A D ++    E  + +       +L      I   D +  + F N+
Sbjct: 361 VFGQDGEVDGVAIFAKDTTERTRAEEALRESEARYRRMLETANEGILSMDADGRIAFANQ 420

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTW 392
           + V+                +  + + +        +  +         KS    ++  +
Sbjct: 421 TMVDFMG------------HDFEDIIGATLPDLMPPDEHSEYVRRAQAIKSGGVRYEQRF 468

Query: 393 HLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              +G      V++ P         G   M  ++T    +E             ++  +E
Sbjct: 469 VRRDGTRTWGRVSATPIRTDVGEYAGAFVMIADITEAKMVERSLRESEARYRRIVETANE 528

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G+   GP+G I+ +N     +       L  G  +  +         E         +  
Sbjct: 529 GIISIGPNGNIRFANKVLCRMLGYAVYELL-GKPVSALLYPEDIPRLEEHLVRRRQGLSD 587

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
            F+   +   G+      S              +    +++   RAE  L
Sbjct: 588 QFEQRYRCKDGSSVWALVSASPILGDDGRYQGVLAMAADISGRKRAEAEL 637



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/468 (13%), Positives = 132/468 (28%), Gaps = 64/468 (13%)

Query: 140 SFDLVAETQNDCAIKIE---GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
              L    ++ CA+++     R  G+ A   +        E        + ++    + +
Sbjct: 89  PVCLTMLGRDGCAVEVRAEIRRPDGAGAGFSLAHFLYPQGE-----ADARTVAGDARIHR 143

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE--------- 247
           ++ ++ + +VW  D      + + S  +     GIV +  +G     F            
Sbjct: 144 LVAENTEDVVWTVDNDLRYTYVSPSVGRL---RGIVPEDVVGRCVDQFVTPQTLPLVLEA 200

Query: 248 -IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKE 298
               R   +             ++H +  +  +  V            G  G    +   
Sbjct: 201 LDGVRRAVARGERSPLARMELEVQHADGSAVWVEAVARPLLDHAGACVGFIGSTRSIGDR 260

Query: 299 ITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             V  +L      L  L  A    + ++  +  +   N +     ++D    A       
Sbjct: 261 REVEQRLRRNERALRALLDATVEDVGLYGTDGTISIINGNMAARLDLDPEEAAGL----S 316

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PR 409
           L + L            ++W+E+   V ++        HL  G+   + +          
Sbjct: 317 LFDHLPQERV-------ESWRESFRQVAQTGRPVSRKGHLK-GRHFDLTLYPVFGQDGEV 368

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G     ++ T +   E             ++  +EG+     DGRI  +N         
Sbjct: 369 DGVAIFAKDTTERTRAEEALRESEARYRRMLETANEGILSMDADGRIAFANQTMVDFMGH 428

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT------SFDDERKSLQGTLELLSD 523
           +   +        I AT        +  +              ++       GT      
Sbjct: 429 DFEDI--------IGATLPDLMPPDEHSEYVRRAQAIKSGGVRYEQRFVRRDGTRTWGRV 480

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           S           A   +   ++T++   ER+L E     R+  E  N 
Sbjct: 481 SATPIRTDVGEYAGAFVMIADITEAKMVERSLRESEARYRRIVETANE 528



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 114/401 (28%), Gaps = 53/401 (13%)

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRMISSSA 257
           FD +       D  G I+  N ++       G   ++A G           +      S+
Sbjct: 29  FDLVPLPCHCLDDQGRIVAVNRAWLALL---GFSREEATGRPLDDFLAGPPQVWAADGSS 85

Query: 258 LEKNFCETV-------------STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
            E   C T+                  G    + +   L   GEA          TV   
Sbjct: 86  PESPVCLTMLGRDGCAVEVRAEIRRPDGAGAGFSLAHFLYPQGEA-------DARTVAGD 138

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 +  N    +   D +    + + S   L  I    +         ++   +   
Sbjct: 139 ARIHRLVAENTEDVVWTVDNDLRYTYVSPSVGRLRGIVPEDVVGR-----CVDQFVTPQT 193

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWM 415
           LP  L          +  + S   +    +   +G  + V   + P         G I  
Sbjct: 194 LPLVLEALDGVRRAVARGERSPLARMELEVQHADGSAVWVEAVARPLLDHAGACVGFIGS 253

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++  + ++E +     +     +D   E V ++G DG I + N    +    +    +
Sbjct: 254 TRSIGDRREVEQRLRRNERALRALLDATVEDVGLYGTDGTISIINGNMAARLDLDPEEAA 313

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             +   ++       + ES     F  +  +     +        L     + ++ P+  
Sbjct: 314 GLSLFDHLPQERVESWRES-----FRQVAQTGRPVSRKGH-----LKGRHFDLTLYPVFG 363

Query: 536 A-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
                    +   + T+  RAE AL E     R+  E  N 
Sbjct: 364 QDGEVDGVAIFAKDTTERTRAEEALRESEARYRRMLETANE 404


>gi|329957581|ref|ZP_08298056.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328522458|gb|EGF49567.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 808

 Score =  287 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/514 (19%), Positives = 200/514 (38%), Gaps = 36/514 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF------LAT 348
           + +   ++        I  N+   + I+D N  L   N   +E++ I          L  
Sbjct: 310 IHERQALDRSEKLFRNIFTNIPAGVEIYDTNGILVDINNKNMEIFGIRDKADVIGINLFE 369

Query: 349 NPSND-ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
           NP+   +L+E +R  + +  +L+++    +I   Y S   +K   +    +         
Sbjct: 370 NPNLSPQLIERIREQDVVDFRLDYE--FGSIEGYYPSDRRNKINLYTKVSKIYDSKGYFT 427

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
              G   +  + T ++D  ++            D+   G A         L    +    
Sbjct: 428 ---GYALINIDNTERIDALSRICDFENFFLLISDYAKVGYAKLN-----LLDKKGYAIKQ 479

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS----D 523
             +         +  +     + + E D   +      +   + K  +G + +L     D
Sbjct: 480 WYKNMGEDENASLPEVVGVYGKMHPE-DRKQMLDFFYKARLGKVKDFKGEMRILRPGTKD 538

Query: 524 SVLEYSIIPLPNA--------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                    + N         + +    ++T+    E  L +  E    AD +K++F+ +
Sbjct: 539 QWNWIRTNVVVNQFKPENGVIELIGINYDITELKETESKLIDAKEKAETADRLKSAFLAN 598

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GF+ LL   +      ++ QY+  +  ++ +LL L++DILDL+ ++A
Sbjct: 599 MSHEIRTPLNAIVGFSSLLVQEEN---PEEREQYMAIVEENNELLLQLISDILDLSKMEA 655

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G        + +N L  ++ + +  K     + +            +DR RL Q+ +  +
Sbjct: 656 GTFDFVERELDVNLLCEDMVRVMKLKAKP-GVEVVFDRHLPECVIASDRNRLNQVIANFI 714

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           +NA+ F++ GS  +     D G   F V + G  I ++    +F+RFV         G G
Sbjct: 715 NNAIKFTAIGSIRLGYDRIDAGHLRFYVADTGIGIMQEKQAEIFDRFVKLNSFVH--GTG 772

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGLSI +S +   GG + + S           +P
Sbjct: 773 LGLSISKSIVEQLGGTIGVESEPGKGACFWFTLP 806


>gi|330816290|ref|YP_004359995.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3]
 gi|327368683|gb|AEA60039.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3]
          Length = 779

 Score =  287 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/515 (21%), Positives = 197/515 (38%), Gaps = 32/515 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +          H    L +LT  + + D    L + N     L     A     P +   
Sbjct: 117 TLRRREAAARQHYEITLASLTQGVMVIDPLGRLTYLNPVAAALTGHQSASAHGKPFH--- 173

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-------- 407
            E     +           +  +      + T +  W  P GQ   V V           
Sbjct: 174 -EIFHGYDSHGVSSRVAALERVLAGAEDGAGTSELHWLQPAGQAARVPVAVVVSPLRDPD 232

Query: 408 -PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
             RGG + +  +++     E +      +    +D   + +   G D RI   NPA + +
Sbjct: 233 GGRGGAVAVLRDVSA----EHERALANGMLRRLVDASPDAIIGVGADRRITSWNPAAQRM 288

Query: 467 WKTEENRLSPGTHIRNIAA--TCSRYYNESDGWDLFAAI------ITSFDDERKSLQGTL 518
           +   E   + G  I  + A     R+   ++  ++  AI          D +R  +    
Sbjct: 289 FGYPEAD-ALGRDIDMLVAPRWLGRHPIATEVGEVREAIGGLDVLCLGGDGKRFRVTLAA 347

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             + D       + L    T         +    R   +       ++ +K+  +  VS+
Sbjct: 348 SPVFDEQQRCVALSLTLRDTRAQRRRERRNHHRLRGARDARRQADTSNRLKDELLAIVSH 407

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  I G+ ++++    G+L   Q Q ++ I  S+  L  +V DILD +++  G +
Sbjct: 408 ELRTPLNVIYGWVEVMRNPIDGAL---QRQAIDAIDRSARSLSRMVADILDASSLATGKL 464

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L+   + L  ++ +V  S  T    + I ++     +      D +RL Q+ S +LSNA
Sbjct: 465 RLDPMPVDLVRVVGDVAGSFGTTAGHDGITLETHCALEACVVSGDAERLKQMLSNLLSNA 524

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
             F+ +G  V +   RD    + +V + G  +  D    VF  F    +     +RG+GL
Sbjct: 525 FKFTPRGGRVTIGLTRDEARVLLTVTDTGQGVVADFLPHVFEAFRRAENSPASPKRGLGL 584

Query: 757 GLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
           GLSIV     LHGG V ++S+  +  TT    +P+
Sbjct: 585 GLSIVRHIAELHGGAVRVASAGRDLGTTFEVALPA 619


>gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 418

 Score =  287 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 148/314 (47%), Gaps = 4/314 (1%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +     R +N  +   L      + +D   +         +  +++ I+       +  
Sbjct: 94  EVLDILRRNFNSVELPVLMVTAKNAHEDIISAFAQGANDYIEKPVDFPIMLARIRHHLQH 153

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +  R+++ L E+N  L  +++ K +F+  +S+ELR+PL  I+G++++L    +G 
Sbjct: 154 KRLDDELKRSQQQLREQNRQLGMSNQYKINFLSSMSHELRTPLNAILGYSEVLLDGMMGE 213

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN KQ +Y + I  S + LL ++ND+LDL+ ++AG ++L      +  L+N V   I  K
Sbjct: 214 LNPKQLEYCKEIYDSGSYLLIIINDLLDLSKIEAGKLELEIQPTHIEILVNSVIGIIKEK 273

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFI 720
              + I +       +G    D  R+ QI   +LSNA+ F+  G  V LK +  D+ + +
Sbjct: 274 ASRHGIILLTDIQEDIGPAELDPLRVKQILINLLSNAIKFTDSGKQVGLKVSLHDDQELL 333

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSS 777
             V + G  + E   + +F  F       ++    G GLGL++V   + LHGG + + S 
Sbjct: 334 IQVFDQGCGVSEQDLQRIFLPFEQAESSIKKKNVEGTGLGLALVHKLVLLHGGSIDVKSE 393

Query: 778 DEGVTTINCRIPSK 791
               ++   R+P +
Sbjct: 394 LGQGSSFFIRLPYR 407


>gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1559

 Score =  287 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 111/719 (15%), Positives = 224/719 (31%), Gaps = 69/719 (9%)

Query: 131  TEKLRKEGQSFDLVA---ETQNDCAIKIEGRVSGSCAFL-------RILSLDGIYSELAE 180
             + LR+   +  L       +     + EG  +G+  +L        +L+       LAE
Sbjct: 698  LQALRESPATQQLPVILLSARAGEESRSEGLEAGADDYLIKPFSARELLARVQSQLHLAE 757

Query: 181  TTL-KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ--KAI 237
                   K++   +    L   L   ++  D  G I + N    +  +    +       
Sbjct: 758  LRRKAEAKVTASEARLAQLVAMLPAGIYTVDAEGRITFYNPRAAEIWQARPTLHAPYAEF 817

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTL--------EHGNNKS--YKIVRVLNSFG 287
                K+  E+ ++  + +  +     E  + +          G+     + I       G
Sbjct: 818  AAQFKIIGEDGREVAMETRPMPTVLREGRNLVTNEIELERPDGSRFFANFSISPTFGPDG 877

Query: 288  EAGIAI----DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
            +   AI    DV+ E      L  T E    +    ++ I   D    +   N +   L 
Sbjct: 878  QISGAIAVFQDVTAERQARVALRATEERYRAVFQQASIGIMECDLEGRILRCNPALARLV 937

Query: 340  EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                A L             R      E    +   + +    + S T +  +   +G  
Sbjct: 938  GYAEAELCGMNW--------RDLCPPEEVGENERVAQRLLRGDRPSFTGERRYRRKDGSV 989

Query: 400  LHVIVTSN---PRGGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              + + +       G     + M  ++T +   E +     +      D+    + +   
Sbjct: 990  GWIDIFATSIFDDSGRPTYGLAMLVDITERKRAEAELRETEERFRVAADNAPVLLWIADT 1049

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            D +    N  +         +      + N+      +  E              +   +
Sbjct: 1050 DKQRTWFNQPWLEFVGRTLEQEVGLGWLDNVHPEDRDHVLEVFDTAFERRGPFRLEYRIR 1109

Query: 513  SLQGTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA----LTEKN 559
               G    +          +  + Y    +      L    +  S  AERA    L    
Sbjct: 1110 RHDGEYRWMLVHGVPRQQDEEFVGYIGSCVDITDRRLAEEAIHASRNAERAHRVELERAR 1169

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +    A   K+ F+  +S+ELR+PL+ ++        +    L        E I  S  +
Sbjct: 1170 DEAVAASRAKDDFLAALSHELRTPLSPVLLLAS--DAAADPQLPPSVRADFETIRKSVEL 1227

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
               L++D+LDL  +    + L+   +     L +   ++  +     I + +    +   
Sbjct: 1228 EARLIDDLLDLTRIVRDKISLDLREVDAPVALRDALINVRAEFEAKRIGLVLDLSPEPQF 1287

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKS 737
              AD  RL Q+   +L NA+ F+  G  V + +  D+     + +V + G  +     + 
Sbjct: 1288 VRADPVRLQQVIWNVLKNAVKFTPAGGRVTITSRIDHERRRLVLAVADTGIGMTAGEIER 1347

Query: 738  VFNRFVSNAH-----RGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
             F  F    H       +  G+GLGL+I    + LHGG ++  S            +P 
Sbjct: 1348 AFEAFAQGDHAGSGGSHRFGGLGLGLAISRRVVELHGGSITAQSPGRGRGAVFRIELPL 1406



 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 4/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQY 609
           A      + E+L   D  K  F  +VS+E R+PLT I+G  + LL      +L +   + 
Sbjct: 343 AFAEQRRRAESLAALDRAKIDFFSNVSHEFRTPLTLILGPLEELLSEPARSALPADAREQ 402

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +S  LL LVN +LD + ++AG +  ++  + L +   ++     + + +  +R+
Sbjct: 403 LKVVHRNSLRLLKLVNMLLDFSRLEAGRIDAHFEPVDLPEFTADLVAVFRSAIEKAGLRL 462

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +V         + DR+   +I   +LSNA  F+  G  + +        F   V++ G  
Sbjct: 463 QVDCPPAPFPALVDREMWEKIVFNLLSNAFKFTRHGE-IEVSLHCLGPTFELRVRDTGLG 521

Query: 730 IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    VF RF     AH     G G+GLS+V+  + LHGG VS++S     T ++  
Sbjct: 522 IPPESQSEVFKRFHRLKHAHSRTHEGTGIGLSLVQELVRLHGGTVSLTSEVNVGTIVSVT 581

Query: 788 IP 789
           IP
Sbjct: 582 IP 583


>gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
 gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
          Length = 954

 Score =  287 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 160/373 (42%), Gaps = 20/373 (5%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           + +   +   + +D   + +     D +I   N    +++  +               T 
Sbjct: 170 RRDESYQRLAQIVDSSYDAIISRDVDDKITCWNAGADAVYGYQAEEALGKPISILFPPTR 229

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTF 542
                E     L    +T F+ ER+   G +  +S      ++ PL +A           
Sbjct: 230 REEEPEITDARLHGKRLTQFETERRRRDGRIISVS-----ITVSPLRDANERIIGVSTIE 284

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++++   AER L +   A  +A+  ++ F+ +VS+E+R+P+  IIG T L   +    L
Sbjct: 285 RDISERKFAERELQKAKAAAERANRARSEFLANVSHEIRTPMNAIIGMTKL---TLAEDL 341

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                +YVE  ++S+  LL+L+NDILD + ++AG   ++ S   L   ++   ++++ + 
Sbjct: 342 PEAVREYVETANSSAHTLLSLLNDILDFSKIEAGKFTIDRSEFNLRQTIDATMRALSERA 401

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNG 717
               + + +  D ++    + D  RL QI + ++SNA+ F+ +G  +    +L+      
Sbjct: 402 FSKGLEVAIDYDPRIPEELIGDAIRLRQIITNLVSNAVKFTERGEVLLSVKLLRRFPREV 461

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              F++ + G  I     K +F  F        R   G GLGL+I    + L GG + ++
Sbjct: 462 RIRFTISDTGVGITPADQKRIFEPFTQVDSSSTRNFGGSGLGLTICHELLELMGGRLELN 521

Query: 776 SSDEGVTTINCRI 788
           S     +  +  +
Sbjct: 522 SEPGVGSRFSFAL 534


>gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 346

 Score =  287 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 158/360 (43%), Gaps = 23/360 (6%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              ++    +  + +GV V   DG I  +N A  SL+   E  L        +    ++ 
Sbjct: 5   QEKRMMQSILSCMVDGVLVLNIDGCIIQANKAAESLFLVREGVL--------LGKRLTQI 56

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               +  D+   ++T+ ++       T   +S S L + +  +P         +  + + 
Sbjct: 57  SENREISDMIDEVLTTGNE-----SFTETTISPSTLVFRVHAVP-------RKDHHERIE 104

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               +       R  D+I+++FV +VS+ELR+PLT+I GF + L    + + ++   +++
Sbjct: 105 GAIVVFHDVTDARNFDQIRSAFVGNVSHELRTPLTSIKGFVETLLDGAMENSDT-CRRFL 163

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I   +  L  L+ D+L L+++++    +      L   +  V      ++ E ++ ++
Sbjct: 164 SIIDTETNRLTRLIEDLLTLSSIESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHVE 223

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            I    +    AD   L Q+F  +L NA+ ++ +   ++++  R +   I +VK++G  I
Sbjct: 224 FIHPYPMPLIQADEDLLGQVFINLLDNAIKYTPRQGKIVIQCQRRDSRIITTVKDSGMGI 283

Query: 731 PEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +    VF RF         Q+ G GLGLSIV+  +  HGG V + S     +T     
Sbjct: 284 PHESLPRVFERFYRVDKARSRQQGGTGLGLSIVKHIVESHGGEVFVDSEIGKGSTFGVSF 343


>gi|42518152|ref|NP_964082.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|268318622|ref|YP_003292278.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|41582436|gb|AAS08048.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|262396997|emb|CAX66011.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|329666464|gb|AEB92412.1| two-component system histidine kinase [Lactobacillus johnsonii DPC
           6026]
          Length = 616

 Score =  287 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 166/421 (39%), Gaps = 38/421 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKY-NTLVKVQGETID 441
            E  K    + NG  + HV V +    G +   F  L+V+++   +  ++  +     + 
Sbjct: 208 EEMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEISDSERRRLDNVLT 267

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE--SDGWDL 499
           H+++GV      G I + N          E  +  G  I N+         +  S   +L
Sbjct: 268 HMTDGVIATDRHGNITIINETALDFLGKTEKDV-IGKPITNLLGLKDVTIQDLLSTQQEL 326

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +  +  DE                 +S+I             + D  + +       
Sbjct: 327 VVRVNDNTRDEMILHA-----------NFSLIQRVTGFVSGLVCVLHDITQQQ------- 368

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K +  +  FV +VS+ELR+PLT++  + + L        N    Q++  I   +  
Sbjct: 369 ----KNEREQQQFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNI-APQFLHVIQDETER 423

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-------HENNIRIKVI 672
           ++ ++ND+L L+ +D G+ K++   + LND +N V       +       H+    IK  
Sbjct: 424 MIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKTHKKKYSIKRE 483

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D  +++Q+   I++NA+ +S  G  + ++  +     I S+ + G  IP 
Sbjct: 484 FPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLGIPR 543

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F+RF         ++ G GLGL+I +  +  H G +   S++   +T    +P 
Sbjct: 544 KDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISLPY 603

Query: 791 K 791
           +
Sbjct: 604 E 604


>gi|87310159|ref|ZP_01092291.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
 gi|87287149|gb|EAQ79051.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
          Length = 845

 Score =  287 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/458 (22%), Positives = 177/458 (38%), Gaps = 38/458 (8%)

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTL----HVIV 404
           +  E L+ L          + +  +            +   + +P  NG       H  V
Sbjct: 238 TLAEFLDLLHED-------DREELRTATARCVSHGTNYSVNYRIPRANGTVRYIQSHGKV 290

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            S+  G T  +      Q +L   Y+  VK            V +    G  +  N AF 
Sbjct: 291 LSSDDGKTRKLVGVCIDQTELTE-YHAAVKKLSLVASSTRHSVVITNQAGETEWVNNAFT 349

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL----EL 520
            L                I           +       I+     +++ +   L    + 
Sbjct: 350 QLTGYSAE--------EAIGRKPGSLLQGPETNQETIEIVRRALQKQEQVSAELLNYAKD 401

Query: 521 LSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                +   I P+ + +      + T +++TD VR    L E  E    A+  K+ F+ +
Sbjct: 402 GHSYWIALEIEPVFDQEGRLSNFIATQIDITDQVRRTEELIEAMETAESANHAKSQFLAN 461

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GFTDLL    + S  + + +Y+E + +S   LL L+N+ILDL+ +++
Sbjct: 462 MSHEIRTPLNGIMGFTDLLLYD-IESTEADRREYLETVRSSGEHLLALINEILDLSKIES 520

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + +         +L +V   +  K  E  I+I+   D  + +  + D  RL Q+   I
Sbjct: 521 GQLLIEKFPCSPQQILTDVISVLRPKFEEKKIQIRRHWDSDIPTQVLTDAPRLKQLLLNI 580

Query: 695 LSNAMDFSSKGSTVIL---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + NA+ F+  G   I+   +A       IF V + G  IP+   + +F  F        R
Sbjct: 581 VGNAIKFTQTGEVRIVARLEAEATRSRLIFDVIDTGIGIPQGKLEMIFQPFSQADSSVTR 640

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           R  G GLGL+I  +   L GG +   S +   +     
Sbjct: 641 RFGGTGLGLTISRNLAELLGGSLHAESVEGLGSKFTIT 678



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 97/307 (31%), Gaps = 28/307 (9%)

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            IK           L ++ +     +L    L  +KL           ++    VW    
Sbjct: 154 LIKAMTATVSWATVLVLIRMTPDLLKLPSMALLGQKLQTANERLDCALEAGGIGVWQWRD 213

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
             D   A+    +    +       + E   L  E+ ++ + +++A       T  ++ +
Sbjct: 214 ENDQFEADGRALQMHGIQATDNVSTLAEFLDLLHEDDREELRTATA-RCVSHGTNYSVNY 272

Query: 272 GNNKSYKIVRVLNSFG------------EAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
              ++   VR + S G              G+ ID ++    +  +     +  +   ++
Sbjct: 273 RIPRANGTVRYIQSHGKVLSSDDGKTRKLVGVCIDQTELTEYHAAVKKLSLVASSTRHSV 332

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
            I +Q    ++ N +F +L        A       LL+   +  +  E +     K+   
Sbjct: 333 VITNQAGETEWVNNAFTQLTGYSAEE-AIGRKPGSLLQGPETNQETIEIVRRALQKQEQV 391

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMF----ENLTVQVDLETKYNTL 432
           S    +       +  +G +  + +   P   + G +  F     ++T QV    +    
Sbjct: 392 SAELLN-------YAKDGHSYWIALEIEPVFDQEGRLSNFIATQIDITDQVRRTEELIEA 444

Query: 433 VKVQGET 439
           ++     
Sbjct: 445 METAESA 451


>gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 604

 Score =  287 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 151/388 (38%), Gaps = 30/388 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + H+++GV      GRI L N A  ++  
Sbjct: 238 GQLALSFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRKGRIILINDAALNILN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLSDSVL 526
                +     +  +       Y      +    +I  F  D+E   L+ +L        
Sbjct: 298 VSRETVLSAPIVTVLG--LDEQYTFETLIEERETLILDFSTDEEMYILRASL-------- 347

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
             S+I           V + D    E           K D  +  FV +VS+ELR+PLT 
Sbjct: 348 --SVIQKEKGLVNGLIVVLHDITEHE-----------KIDRDRREFVANVSHELRTPLTT 394

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +  + + L             +++E     +  ++ LVND+L L+ +D+   KL  + + 
Sbjct: 395 MRSYLEALADGAWRD-EEIAPRFIEVTQNETERMIRLVNDLLQLSKLDSKDYKLKKTRVH 453

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
                ++V         E N+        +      D  ++ Q+F  I+SNA+ +S +G 
Sbjct: 454 FIPYFHKVIDRFELTKKE-NVSFVRDFPDEKIIVYMDEDKITQVFDNIISNALKYSPQGG 512

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           T+  +  +       SVK+ G  IP+     +F RF        R   G GLGL+I +  
Sbjct: 513 TITFRVKKKGDYIEVSVKDEGVGIPKSDLSKIFERFYRVDKARSRKLGGTGLGLAIAKEV 572

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  HGG +   S +   TTI   +P ++
Sbjct: 573 VVAHGGRIWAESQERKGTTIYFTLPIEQ 600



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 76/235 (32%), Gaps = 33/235 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N + + +  +    + + P    L
Sbjct: 253 EAQATTEGERRKLESVLTHMTDGVIATDRKGRIILINDAALNILNVSRETVLSAPIVTVL 312

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIW 414
                    L EQ  ++T  E   ++     T ++ + L    +L VI        G I 
Sbjct: 313 G--------LDEQYTFETLIEERETLILDFSTDEEMYILR--ASLSVIQKEKGLVNGLIV 362

Query: 415 MFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           +  ++T    ++            +  T +      ++ L++G      D  I    P F
Sbjct: 363 VLHDITEHEKIDRDRREFVANVSHELRTPLTTMRSYLEALADGAW---RDEEIA---PRF 416

Query: 464 RSL-WKTEENRLSPGTHIRNIAATCSRYY----NESDGWDLFAAIITSFDDERKS 513
             +     E  +     +  ++   S+ Y            F  +I  F+  +K 
Sbjct: 417 IEVTQNETERMIRLVNDLLQLSKLDSKDYKLKKTRVHFIPYFHKVIDRFELTKKE 471


>gi|75911003|ref|YP_325299.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704728|gb|ABA24404.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1287

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 129/715 (18%), Positives = 247/715 (34%), Gaps = 98/715 (13%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYKK-- 224
            IL L        +     K L   +   + L D +   +    D     +  N ++ K  
Sbjct: 422  ILDLSERQQAQQKILQLNKDLQRRVVELQTLLDMIPIGIGIAEDAECQNIKINPAFAKQL 481

Query: 225  -----------NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
                           +     K   E R+L   E+  +  +   +E    E     E+G 
Sbjct: 482  QLSTDVNASLSAPPNQRPTTFKIFHEGRELLPAELPMQYSAVHGVEVLDYEVDVVHENGE 541

Query: 274  N-KSYKIVRVLNSF-----GEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFD 323
              K  + V  L        G  G  +D++     E  + ++     ++L+ +   +   +
Sbjct: 542  IIKLLEYVAPLFDEDGKTRGCIGAFVDITQRKQAEELLRNEQKWLEDVLNLMPRPLLFIE 601

Query: 324  QNR-YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
                 + F NR+  EL              +E        +     +  +       +  
Sbjct: 602  PETARVTFANRAADELAG---GKFPRGVPAEEYHTVYHFTDINGNPIPNEQMPGVRVARG 658

Query: 383  KSSETHKDTWHLPNGQTLHVIVT----SNPRGG---TIWMFENLTVQVDLETK----YNT 431
            +  E  +  WH  + + L +++         G     + +F+++T     E      Y  
Sbjct: 659  ERLEGLELDWHTND-EVLSLLIFADTLPAMHGYPATCVVVFQDVTQIKQAEKALSLGYQR 717

Query: 432  LVKVQGETIDHLS--EGVAVFGPD--------GRIKLSN------------PAFRSLWKT 469
            L  +     D LS  E VA+            G     N             ++  +   
Sbjct: 718  LKLLFSTANDLLSSQEPVALIDSCFQKLAQQIGLDVYLNYLVEDNSQSIRLASYHGICPE 777

Query: 470  EENRLSPGTHIRNIAATCSR------YYNESDGWDLFAAIITSFDDE---------RKSL 514
               ++        I  T ++        N     D    +I S             +  L
Sbjct: 778  LAQKIKFLKFGEAICGTTAQERHSIALENVQQSTDPKTQLIRSMGIHAYYSYPLIAQGRL 837

Query: 515  QGTLELLSDSVLEYSIIPLPNAQTMLTFVNV-TDSVRAERALTEKNEALRKADEIKNSFV 573
             GTL   S S   ++       Q +   + +  + +    +L  + E L +A+ +K+ F+
Sbjct: 838  LGTLSFGSRSRTSFTENQKGMMQAVCDQIAIAMERMELINSLQRQTEQLTEANRMKDEFL 897

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
              +S+ELRSPL  I+G+  LL+  +L    ++ ++ +E I  ++     L+ D+LD++ +
Sbjct: 898  AILSHELRSPLNAILGWAQLLQARRLS--EAQTAKGLETIERNAKAQTQLIEDLLDISRM 955

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-----LGSFVADRQRLL 688
              G ++LN  T  L  ++    ++I        I +    +             D +RL 
Sbjct: 956  IRGKLRLNVRTCNLIPIIETTIENINLAAQAKEIDLTFFLENPATENLPFQVSGDPERLQ 1015

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNG----------DFIFSVKNNGSSIPEDMCKSV 738
            Q+   +L+NA+ F+  G  V ++  ++ G               V + G  I       V
Sbjct: 1016 QVIWNLLTNAIKFTPSGGKVEVRLTKNPGCEQNELITNSYAQIQVIDTGIGINSSFLPYV 1075

Query: 739  FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
            F+RF            G+GLGL+IV   + LHGG V + S  +E  +T   ++P 
Sbjct: 1076 FDRFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVHVHSPGEEQGSTFTVKLPL 1130


>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 951

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 143/319 (44%), Gaps = 35/319 (10%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSVLEYSIIPLPNA 536
           +R + +         DG++     I + D+E  S +  LEL   L    LE ++      
Sbjct: 212 VRVVKSNNDELGALMDGFNEMLGQIQTRDNELASYRTQLELKVALRTRELELTV------ 265

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                             L    EA + A   K+ F+ ++S+E+R+P+  ++G  +LL  
Sbjct: 266 ----------------AELQRAMEAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMA 309

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+ +Q ++V  +  S   LL+++NDILD + ++AG ++L  +   L D + +V +
Sbjct: 310 TR---LDEQQRRFVSSVRRSGEALLSIINDILDFSKIEAGKLELEETAFNLEDTVADVIE 366

Query: 657 SIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +A   H   + I  ++ +      + D+ R+ Q+   ++ NA+ F+ +G  +I    ++
Sbjct: 367 LLAETAHRKGLEIAALVENDVPPVLLGDQVRVHQVLMNLVGNAVKFTDQGEVIISGMLKE 426

Query: 716 NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                   +  V + G  I +++   +F+ F    +   R   G GLGL+I    + L G
Sbjct: 427 EHKEEVTVLIRVSDTGIGISDEVKGRIFDGFSQADNSTTRKYGGTGLGLTIARQLVELMG 486

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S     +T    +
Sbjct: 487 GEIGVESEVGRGSTFWFTL 505


>gi|220920192|ref|YP_002495493.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
 gi|219944798|gb|ACL55190.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
          Length = 1009

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 126/667 (18%), Positives = 239/667 (35%), Gaps = 57/667 (8%)

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
           R SG+ A  R+ +     +  A         +   ++     D +D  V        +  
Sbjct: 99  RASGAGA--RVGTGPPAAAAAASGPESRVDAARTAALLGKTLDCMDQGVILVGPDRTVQV 156

Query: 218 ANISYKK--------NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
           AN   ++                  +A+      +   +    +  S  +     TV+  
Sbjct: 157 ANRRAREWLGLSEAFIASRPSYREVRALARRSPHWGSLVADTPLQLSEDDPAATHTVAER 216

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAI-DVSKEITVNDQLTHTYEILHNLTVAIAIFD-QNRY 327
            +      +I  V    G     + D+++  +  D+     E   N T  I++   +   
Sbjct: 217 RNAEGTVLEIRTVRTEDGGLIQTLTDITERRSAEDRYRLLAE---NATDLISLQSIRGGT 273

Query: 328 LQFHNRSFVELWEIDLAF-----LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
             + + S   +   +        LA     D+L    R A  L      +T +  +    
Sbjct: 274 KTYVSPSARAVVGWEPEEFAQLTLAQQLHPDDLARVKREAASLTPDAPRRTSEYRLR--- 330

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                HK   ++    TL +     P    I    ++T +   +              + 
Sbjct: 331 -----HKSGHYVWVESTLLLTKPGTPDEALIIASRDVTARRAADDALRESEARHRLLAER 385

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             + +A    DG ++  +P+   +     + L   + + ++     R          +AA
Sbjct: 386 TGDVIARADLDGTLRYLSPSVEPVTGYAADALLGRSAMAHVHPQDRRTVLHR-----YAA 440

Query: 503 IITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTML--TFVNVTDSVRAERAL--- 555
           ++ +    R   +  +      D  LE +   L +  T +   FV+V   V A +A+   
Sbjct: 441 LVAAGPGARAKFEYRVRHRHGHDVWLEVNPTVLYDEATGVPLGFVDVARDVTARKAVDAE 500

Query: 556 --------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                            A + K  F+  +S+E+R+PL+++IG+T+LL       L   Q 
Sbjct: 501 LAAAREQAEAARVHAELASQAKTDFLASMSHEIRTPLSSVIGYTELLLDDP--DLTEGQR 558

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
                I ++ + LL +V+DILD + ++AG + L+     L+ L+      +        +
Sbjct: 559 LQASRIRSAGSALLTVVDDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGL 618

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFS 722
            I+V  D  L  + V D+ RL QI    L+NA+ F+ +G  V+  A   + D       S
Sbjct: 619 EIRVDIDPALPQTLVGDQNRLRQILLNFLNNALKFTRRGRVVLAVATAGSTDRGWPIRVS 678

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +    +F RF       +R   G GLGL+I +  I L GG + + S+   
Sbjct: 679 VTDTGIGIAPEQQARLFKRFTQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVVSAPGE 738

Query: 781 VTTINCR 787
            +T    
Sbjct: 739 GSTFWFE 745


>gi|150398898|ref|YP_001322665.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
 gi|150011601|gb|ABR54053.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
          Length = 421

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 135/253 (53%), Gaps = 5/253 (1%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T+   AE+ L +  + L++ D +K+ F   +S+E+R+P+T+I G+T+LL    +G 
Sbjct: 171 FQDITEQKLAEQKLKKSYDELKELDRLKSEFTAIISHEIRTPITSIKGYTELLNDESMGK 230

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN+ Q   +  I  +   L  LV+D+LD++ ++     LN   + + D+L  V   +A  
Sbjct: 231 LNNNQKMCLNTILENVIRLGRLVSDVLDISRIERNTFTLNIQKVDVKDVLEHVLSELAPI 290

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI 720
             + +I++ +       +  AD+ RL Q+F+ I  NA+ FS +   V +      N D +
Sbjct: 291 ALKKHIKLSLEIPN--ITIDADKDRLNQVFTNITENAIKFSPENEKVEITGKEGLNSDIL 348

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            S+K+NG  I ++  + +F+RF    +++R ++ G GLGL I +  I  H G + + S  
Sbjct: 349 ISIKDNGIGISKNEFEKIFDRFYQIDSSNRRKKGGAGLGLPISKGIIKAHNGKIWVESEL 408

Query: 779 EGVTTINCRIPSK 791
              +T    +P K
Sbjct: 409 NQGSTFYISLPKK 421


>gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
 gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
          Length = 1407

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 98/504 (19%), Positives = 191/504 (37%), Gaps = 34/504 (6%)

Query: 306  THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 +  ++ ++I +   +  ++  N +   ++ +               +  R  + +
Sbjct: 757  NDLQNLFSSINISILMVGSDLKIRCFNIAAEIIFNLIPT------------DKGRPLSNI 804

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLT 420
              +L     +  I  V  +S          +G    + +       N   G + +  ++ 
Sbjct: 805  KHKLKVPNLEAKIVEVISTSNLKTQEVQDLDGHWYDLRIRPYRTIDNKIDGAVVILVDID 864

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSP 476
                      +  +     +  + E + V   D ++  +N     AF+   K  ENRL  
Sbjct: 865  DIRRNANILKSFREYAAAIVSTVRESLVVMDVDLKVVTANQFFYEAFQVGAKETENRLIY 924

Query: 477  --GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL----EYSI 530
              G    NI    S   +       F  +    D E+  +   +  L+   +    +  +
Sbjct: 925  EIGDGQWNIPQLRSLLEDTIPQQGQFQDVEIEHDFEQ--IGHKIMRLNGRKITQIGDTPM 982

Query: 531  IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            I L             +  +          A   A+  K+ F+  +S+ELR+PL  ++G+
Sbjct: 983  IILVIEDITQRKQLEAERTQLLAQEQSARTAAETANCAKDEFLSVLSHELRNPLNCLLGW 1042

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            T LL+  +L    +K +Q +E I  S+     L+ D+LD++ +  G M+L    + L  +
Sbjct: 1043 TQLLRKQQLD--EAKTNQALEAIERSAKAQHQLIGDLLDISRISVGQMRLEAQPVKLIPV 1100

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            +      +       NI+I+   D    + V D+ RL Q+   +LSN++ F+  G  + +
Sbjct: 1101 IEAAIDVVQLAADAKNIQIQSRLDSAGRTLVGDQIRLQQVIWNLLSNSIKFTPVGGRIDI 1160

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
                        V++ G  I  D    +F+RF        R   G+GLGLSIV   + LH
Sbjct: 1161 TLDYSPFQGEIQVRDTGVGISADFLPYIFDRFRQADRSPTRSNTGLGLGLSIVRHLVELH 1220

Query: 769  GGHVSISSS-DEGVTTINCRIPSK 791
            GG V ++S  +    T   R+P +
Sbjct: 1221 GGTVEVTSPGEGQGATFTVRLPLQ 1244


>gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
 gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
          Length = 2782

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/407 (22%), Positives = 175/407 (42%), Gaps = 25/407 (6%)

Query: 397  GQTLHVIVTSNPRGGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            G    VI  +           +L ++   L  +              ++EGV V     +
Sbjct: 2378 GTVASVIAAAVNNAQLYNFINDLALRNAVLLEEQREETSKSAAVFRSMTEGVIVLDTRQQ 2437

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            I L NPA   +     +++     ++ +A+      +      ++  I+      R+S Q
Sbjct: 2438 ITLFNPAAEQVLDIPASQVLN-QPLQQLASIGDDETSRRRAQTIYNGIVQGLRRMRES-Q 2495

Query: 516  GTLELLSD-----SVLEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            G      D      V+  +I P+  P+ Q     V + D  R   A           D+ 
Sbjct: 2496 GIFSTSVDLTDPSQVIAVNIAPVRGPDGQHYGEVVVLRDITREIEA-----------DKE 2544

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K  F+  VS+ELR+PLT I G+ D+L  +   +L   Q  Y+  I  ++  L  L+ DIL
Sbjct: 2545 KRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQINYLTIIKNNTNRLRALIEDIL 2604

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            + +  D+   KL ++ + +  +++EV QS+  +     + +++ +   L    AD++R+ 
Sbjct: 2605 EFSRPDSKK-KLTFTQVEIPAVIDEVVQSLRLEYERKGMTVRIDAPPTLPPVTADQKRVS 2663

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   + SNA+ ++ +G ++ ++A  +        V++ G  +  +  K +F  F    +
Sbjct: 2664 QIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQIEVEDTGVGMSPEQLKKLFRPFYRADN 2723

Query: 748  --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              R    G GLGLSI +  + +HGG + ++S     +T    IP ++
Sbjct: 2724 PLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFAFAIPLQQ 2770



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 54/143 (37%), Gaps = 10/143 (6%)

Query: 299  ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP--SNDELL 356
                ++ + +  +  ++T  + + D  + +   N +  ++ +I  + +   P      + 
Sbjct: 2409 EEQREETSKSAAVFRSMTEGVIVLDTRQQITLFNPAAEQVLDIPASQVLNQPLQQLASIG 2468

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSN--PRG--- 410
            +   S  +   Q  +    + +  + +S      +  L +  Q + V +     P G   
Sbjct: 2469 DDETSRRR--AQTIYNGIVQGLRRMRESQGIFSTSVDLTDPSQVIAVNIAPVRGPDGQHY 2526

Query: 411  GTIWMFENLTVQVDLETKYNTLV 433
            G + +  ++T +++ + +    +
Sbjct: 2527 GEVVVLRDITREIEADKEKRQFI 2549


>gi|162450927|ref|YP_001613294.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161161509|emb|CAN92814.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 885

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 111/530 (20%), Positives = 211/530 (39%), Gaps = 45/530 (8%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A    +   V   L     ++      I   D    L+  N        +          
Sbjct: 214 AERAERIAAVERDLLRA--LIEQSGDGIMAADACGALRICNGEAQRQHGV------YERD 265

Query: 352 NDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSNP 408
             + LE LR+   L  +    +  ++ +    +  +     W    P+G    +  T++P
Sbjct: 266 ARDALESLRNRGLLALDGRPLRPDEDPLHRALRGEKVENARWLVTRPDGSIRALSGTASP 325

Query: 409 RG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
                    G + +  + T  ++ E       +     I  L EG+ +    G I+ +N 
Sbjct: 326 LRHADGSPAGAVLITRDETDAIEAERALRDSEERYRVIISALEEGITLQDERGVIRTANA 385

Query: 462 AFRSLWKTEENRL----SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +   +      +L      G   R +    S +  E     + + I       +  +   
Sbjct: 386 SAERILGLPMAQLVGSTMMGPSCRLVREDGSPFPLEM----VPSQIALRTGAPQSGVLLG 441

Query: 518 LELLSDSVLEYSIIPLPN-------AQTMLTFVNVTDSVRAER-------ALTEKNEALR 563
           LE L  SVL  S+   P        A  + +F ++T   RAE        A     +   
Sbjct: 442 LERLDGSVLWLSVNAQPLRGEDGSVAGVVSSFFDITARKRAEEERQGLLAAAESARQEAE 501

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A  +K+ F+  +S+ELR+PLT ++G+  +L+T KL     ++ + +E +  ++     L
Sbjct: 502 AASHLKDEFLATMSHELRTPLTAVLGWVRMLRTGKLP--EERRDKALETVERNAQAQAQL 559

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LD++ + AG ++L+   I L  +++   + +        +R+  + +  +G+   D
Sbjct: 560 IDDLLDISRIMAGKLRLDVHRIELVPVIDAALEVVRPAADAKGVRLLSLLEPGVGAVAGD 619

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+   +L+NA+ F+ +G  V ++  R +G    +V + G  I       VF +F 
Sbjct: 620 AGRLQQVVWNLLNNAVKFTPRGGVVRIRLDRADGSAEITVSDTGQGIEPAFLPYVFEQFR 679

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
                  RR  G+GLGL+IV+S + +HGG     S  EG   T   ++P 
Sbjct: 680 QAESGTTRRHGGLGLGLTIVKSLVEMHGGTAHALSDGEGRGATFVVQLPL 729


>gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1119

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 90/509 (17%), Positives = 196/509 (38%), Gaps = 27/509 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++   +         IL +      I ++   +   N +   L+      L    +    
Sbjct: 222 ARTKALEAANIRLNTILESAVDGFVIINEFGIITDINPAVSRLFGYAHNELIGQ-NVSIF 280

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RG 410
           + F      L +    + +  ++  +     + + T    +GQ   + ++ +      R 
Sbjct: 281 MPF--DQRPLHDGYIQQYFTTHVAKII--GTSRELTAQRKDGQLFPIALSVSQMSIDNRA 336

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             I + ++L+     E        V   T+    + +      G++   N A   L+   
Sbjct: 337 MFIGLVKDLSEAKRKEIAAAKTESVLLATLAASQDCLITIDMSGKVIEFNLAATRLFGYS 396

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYS 529
               + G  + ++     +      G + +         ++R  L    +  +   +E  
Sbjct: 397 REE-AVGALLEDLIIPEDKQQGHKRGIERYRRTGEGKMLNKRVELLARCKAGNLIPIELE 455

Query: 530 IIPLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           ++P+     +L      ++++    E+ L +  E   +  ++K+ F+  +S+E+RSPL  
Sbjct: 456 VVPIQLGDEVLFTAFLRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNA 515

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G  +LL  S   SL+  Q  +      + + LL+ +NDILD + ++AG M L      
Sbjct: 516 ILGGVELLLDS---SLSKDQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFE 572

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
            + L+ +V Q +  K  E  + +    +  +  + V D+QRL Q+   ++ NA+ F++ G
Sbjct: 573 PDKLVAQVLQILEPKAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTASG 632

Query: 706 STVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
            T+ ++    +           V ++G  I  +    +F  F    + H    +G GLGL
Sbjct: 633 -TITVEMWIPDNHQTEVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLGL 691

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR 787
           +I    I + GG + + S     +     
Sbjct: 692 AICSELITMMGGTIELQSELGQGSRFTFY 720


>gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 571

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 171/400 (42%), Gaps = 27/400 (6%)

Query: 398 QTLHVIVTSNPRGGTIWMFENL----TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           +   V    N  G    + + +    T   +   +     K   E I+HL  GV +    
Sbjct: 191 KQYEVRYKGNAYGEVADLGQTINELATSLEEQTQEIEQNDKRLYELINHLVIGVMLIDEH 250

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             IK+ NPA   +   +  +L   +++    +    +  E          I    +E+++
Sbjct: 251 RTIKMVNPAMSVILGEDVTKLVGNSYVEATKSYGLSHLIE----------IAYQKNEKQN 300

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            +       D +++ +I+P+   +     + V         L      +R+ ++++  FV
Sbjct: 301 DEIYFYYPKDKIVDANIVPIDGKEPGEQNLIV---------LLYDITEIRRLEKVRTDFV 351

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            + S+EL++P+T + GF++ L    +        Q++E + A S+ L  LVNDIL+L+ +
Sbjct: 352 TNASHELKTPVTALKGFSETLLDGAMED-KEVLKQFLEIMLAESSRLDFLVNDILELSKL 410

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +   + +N   + L + +    Q +     E  +++ +I +  L     D  RL QI + 
Sbjct: 411 EQKQVPMNMQEVNLTEAVLSTFQLVKQTADEKEMKLNLIEEDTL-FITVDSSRLKQILAN 469

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQR 751
           +++NA+ ++     V +   ++N   +  V +NG  IPED    +F RF           
Sbjct: 470 LINNAVVYTQDSGEVTVTIRKENNQAVILVSDNGIGIPEDEQDRIFERFYRVDKARSRNS 529

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGLSIV+  +    G +++ S     TT   R+P +
Sbjct: 530 GGTGLGLSIVKYLVENLNGSIAVESKLGLGTTFIVRLPIQ 569


>gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
 gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
          Length = 1407

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 10/258 (3%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            F N     R E AL E   A   A+  K+ F+ ++S+E+R+P+  +IG T LL  +   S
Sbjct: 861  FTNAEVRHRHETALVEARYASESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLDT---S 917

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+ +Q  Y + +  S+  LL L+NDILD + ++AG  +L      L ++L++V   +A +
Sbjct: 918  LSDEQRGYAQAVMESADFLLGLINDILDFSKIEAGKFELEMLDFDLRNVLDDVSSIMAVR 977

Query: 662  MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDN 716
              +  +     +  ++      D  RL Q+ + +  NA+ F+ +G    S  ++  +   
Sbjct: 978  ARDKELEFICAASPEVTPFLRGDPGRLYQVLNNLAGNAIKFTHQGEVAVSVALVSGSAQE 1037

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                FSV++ G  IPE     +F+ F        R   G GLGL+I    + L GG + +
Sbjct: 1038 DLLRFSVRDTGIGIPEQKIAILFSSFTQVDASTTRKFGGTGLGLAISRQLVELMGGEIGV 1097

Query: 775  SSSDEGVTTINCRIPSKE 792
            SS +   +     IP K+
Sbjct: 1098 SSRENEGSEFWFTIPFKK 1115


>gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
          Length = 949

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 159/379 (41%), Gaps = 12/379 (3%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F  L  ++  E  Y +++  Q   +D+    +            N      +   +  L 
Sbjct: 174 FSYLKERLIREKAYESILDGQAILLDNAQSQIWALSNVTSYATVNETHAKFFGKNKVELE 233

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                 ++    +        WDLF    +   + E  + +G   LL+   +        
Sbjct: 234 Y-QDFYDVFDIDTANALSQLSWDLFEKNELAEKELEINNYKGEKRLLNVKGIPQRDTIGN 292

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               + T V++T    AE  L +  E    A+  K+ F+ ++S E+R+P+  I GF +LL
Sbjct: 293 IKYIICTAVDITKQRSAEAQLYKAKEEAEAANIAKSKFLANMSREIRTPMNGIFGFLELL 352

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +   L +L+S+Q +++    ++S +LL+++NDILDL+ ++A  + +   +  L D + + 
Sbjct: 353 E---LTNLSSEQKEFIREAKSASEVLLHIINDILDLSKIEARKLIMENISFNLRDAIEDT 409

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
              +A K  E  + + V I +      + D  RL QI + ++ NA+ F+ KG   + +  
Sbjct: 410 VSLLAPKAAEKGLELYVRIKEDVPEEVIGDPSRLRQILNNLIYNAVKFTEKGYVSISMDY 469

Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
              + +     F V++ G  I  +    VF  F        R   G GLGL I    I +
Sbjct: 470 LEKDHEIALVNFEVEDTGIGIATEDIPKVFEAFNQADASTTRKYGGTGLGLPISYELIKM 529

Query: 768 HGGHVSISSSDEGVTTINC 786
            GG + + S     +T   
Sbjct: 530 MGGDIRVESKLGEGSTFKF 548


>gi|194292534|ref|YP_002008441.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226438|emb|CAQ72387.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1102

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 169/393 (43%), Gaps = 23/393 (5%)

Query: 411 GTIWMFENLTVQ--VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLW 467
           G IW+ +   ++       +      +    I+    G+ +   + R + L+N A +SL 
Sbjct: 363 GWIWLIDRRIMRPAQRQSRRLQESDALGRFVIEVAGVGLMIVERNTRQVLLANAAAQSLI 422

Query: 468 KTEENRLSPGTHIRNIAATC-SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                       +  +   C +R  +     +    ++  FD +     G    L   ++
Sbjct: 423 DQAAPAG-----LAQLQDACEARLASCDTSPEGPPQVLPRFDVDMACANGETRYLEVRLV 477

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           + +      A  +    +VT++ R E  L E   A   A+  K+SF+  +S+E+R+PL  
Sbjct: 478 QITYD--VRAALLCALNDVTEARRGEARLREAIRAADAANRAKSSFLATMSHEIRTPLNG 535

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G  +LL  S+   L+ +Q   +  +  +S  L++++ND+LD + ++AG M L      
Sbjct: 536 MLGSIELLSLSR---LDPRQRDQLAVMQHASQSLIDIINDVLDFSKIEAGQMSLQPRPCR 592

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++++ EV ++ A +     +R+  I+D  L    +AD  +L QI + ++SNA+ F+ +G
Sbjct: 593 LDEVVEEVTRNFAAEAARKRLRLLCINDPSLSEPVMADAVKLEQILNNLISNAVKFTEQG 652

Query: 706 STVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLG 757
             ++    + +            V + G  I     + +F  FV    +      G GLG
Sbjct: 653 KVIVTARRKRSAHGGGAEGVELRVVDTGIGIAAHDQRRLFEPFVQAEQSDTRHYGGTGLG 712

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LSI    + L  G + + S     +     +P 
Sbjct: 713 LSICRRLVELMRGEIRVVSEPGLGSCFIVSLPL 745


>gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
 gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
          Length = 575

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/360 (21%), Positives = 160/360 (44%), Gaps = 23/360 (6%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
                   I+++  G+ +    G + L N ++R +++ ++  +    H            
Sbjct: 235 QRARLESLIEYMGAGLLLVDERGIVTLVNRSYREMFQYDDLSIGQFYH---------GIL 285

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
              +   L   +  + +  R+ L       +      S  P+ +   ML         R 
Sbjct: 286 PSPEVETLIEDVYLTEEVHRRQLS-IRTGFNQKTYMVSAAPIFSDTGML---------RG 335

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L      L++ ++++  FV +VS+EL++PLT+I GF++ L       +   + Q+++
Sbjct: 336 TTLLFNDITELKRLEKMRKDFVANVSHELKTPLTSIRGFSETLLDGA-KEVPELRDQFLD 394

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   +T +  LV D+L+L+ ++    ++   ++ LN L++EV   ++ K  + +I+++ 
Sbjct: 395 IIQKEATRMQMLVEDLLELSRLERDDFQMELVSVDLNQLVDEVCLLLSQKASKKSIQLEA 454

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +G +    AD  R+ Q+   +++NA+++S +GS V +        +   VK+NG  I 
Sbjct: 455 KHEGTV-VLQADLNRMKQVIMNLVANAINYSPEGSRVEIAVEAKADSYKLRVKDNGIGIA 513

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E     +F RF            G GLGL+IV+  I+LH   + + S +   TT     P
Sbjct: 514 EKEVSRIFERFYRVDKARSRNSGGTGLGLAIVKHIIDLHHATIDVESEEGKGTTFTITFP 573



 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 23/132 (17%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           Q      ++  +   + + D+   +   NRS+ E+++ D         +  + +F     
Sbjct: 235 QRARLESLIEYMGAGLLLVDERGIVTLVNRSYREMFQYD---------DLSIGQFYHGIL 285

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSN-----PRGGTIWM 415
             PE       +  I  VY + E H+    +  G   +T  V             GT  +
Sbjct: 286 PSPEV------ETLIEDVYLTEEVHRRQLSIRTGFNQKTYMVSAAPIFSDTGMLRGTTLL 339

Query: 416 FENLTVQVDLET 427
           F ++T    LE 
Sbjct: 340 FNDITELKRLEK 351


>gi|209883557|ref|YP_002287414.1| MmoS [Oligotropha carboxidovorans OM5]
 gi|209871753|gb|ACI91549.1| MmoS [Oligotropha carboxidovorans OM5]
          Length = 740

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 156/375 (41%), Gaps = 16/375 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +D   +     +      +  S+ +A+    GR+   N  F        + L   T  
Sbjct: 95  ALIDRNWELKEAEERARSLFESQSDLIALRDARGRLTFVNDTFCHYAGKPRSDLLGSTRT 154

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +                   I T+F     + + TL   + +           A+   
Sbjct: 155 LPVIEQGDDATEPGGTRVHDQKIQTAFGPRWIAWRETLVRPNAN---------QGAELQC 205

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +VTD   +E AL    +    A+  K+ F+   S+E+R+PL  I+G ++LL  ++  
Sbjct: 206 VGRDVTDRAESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSNLLLDTQ-- 263

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q+ Y + +  S   L++LV ++LD + ++AG + L +    L  ++ E+ + +A 
Sbjct: 264 -LNPEQAAYAKAVKDSGEALVSLVEELLDFSKIEAGKIDLEHRPFHLGAMIEEITELLAP 322

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARDNGD 718
           +     I I    D +L    + D  RL Q+   + SNA+ F+++G   ++ +      +
Sbjct: 323 RAQARQIEIASYVDERLPREVIGDAARLRQVLLNLASNAVKFTAEGGVALIAEPGIWPNE 382

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F +++ G  I  D  + +F  F         +  G GLGL+I E  +   GG +++ S
Sbjct: 383 ISFLIRDTGIGIAPDAQQRIFREFEQAGEEIAREYGGTGLGLAISERIVRRMGGRIALES 442

Query: 777 SDEGVTTINCRIPSK 791
           +    TT    IP +
Sbjct: 443 AIGRGTTFEVSIPLE 457


>gi|255012859|ref|ZP_05284985.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1041

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/509 (19%), Positives = 222/509 (43%), Gaps = 38/509 (7%)

Query: 304 QLTHTYEILHNLTVAI----AIFDQ-----NRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            + +   +++++ +       +FD+     +  +   N +   L + D +++    S   
Sbjct: 407 FMRNYSRLVNSMPICYMKQRILFDEKEYPTDYVILELNPALEALLKCDKSYIGKKGSEIH 466

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            L+  R          +      IFS  ++ + +   ++ P     +V++ S    G + 
Sbjct: 467 PLQMSR----------YLKICHLIFS--ENKKINTQYYYKPTDCYFNVLIISANTPGCVD 514

Query: 415 MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS------NPAFRSLW 467
           +F  +++     +    T+ +    ++D  +     +       L       N  F  L+
Sbjct: 515 IFMVDVSELAKTQQVLRTVNQKLSMSLDVANVTPWKWDLVQHTILCDVNKAVNVNFSGLF 574

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-----KSLQGTLELLS 522
              +  +    +   I         ++    +   +    ++ R     K L G   + +
Sbjct: 575 DENQLTVPDTEYFSKIYKEDREKVRKAYESLILGKVNKIKEEYRIYNPNKGLHGLEWVEA 634

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            + +E           + + + ++D    ER L E      +++ +K++F+ ++S+E+R+
Sbjct: 635 CAAVEKKDENGKPLTLVGSSLIISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRT 694

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+++L  + +  L  KQ +Y E I  ++ +LL L+NDILDL+ ++AG ++  Y
Sbjct: 695 PLNAIVGFSNILAETDV--LEEKQ-EYAEIIENNNALLLQLINDILDLSKIEAGTLEFVY 751

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S + +N LL+++++S++ ++   N+R+      K       + RL+Q+   +L+NA+ F+
Sbjct: 752 SDVDVNTLLSDLERSMSKRVVNENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFT 811

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS     +  +     F V + G  I  +  +++F+RFV      Q  G GLGLSI  
Sbjct: 812 DQGSISYGYSCLNKKMLRFYVSDTGRGISVEQQEAIFDRFVKLDSFAQ--GTGLGLSICR 869

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             ++  GG + + S     +T     P K
Sbjct: 870 MIVDHLGGEMGVESEIGKGSTFWFTFPYK 898


>gi|255011436|ref|ZP_05283562.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 522

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 103/514 (20%), Positives = 217/514 (42%), Gaps = 57/514 (11%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS-- 361
           +  ++  IL  L   + +FD N  +                 LA++P+ + +        
Sbjct: 39  RERYSTRILDALPDMLTVFDHNANIV---------------ELASSPTTNHVEGTTAESI 83

Query: 362 -----ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHV--IVTSNPRGGTI 413
                 + +PE+  +++ ++N+  V ++ ++      L  +G   H    +        +
Sbjct: 84  INSNVRDIVPEEA-YESVRQNMDKVIRTGKSSIAEHSLTLDGVLHHYENRIFPLDDQYLL 142

Query: 414 WMFENLTVQVDL----ETKYNTLVKV---QGETIDHLSEGVAV--FGPDGRIKLSNPAFR 464
            M  +++ + ++    E + + +V++     + ++++   + V   G D R    N AF 
Sbjct: 143 CMCRDVSQETEMARTNEAQRSEIVRLNSLMNDILNNIPVYLFVKDTGNDFRYLYWNKAFA 202

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNES-DGWDLFAAIITSFDDERKSLQGTLELLSD 523
                           R + +T +  + +  D   L    + + +  R     T   +S 
Sbjct: 203 EYSGISVE--------RAVGSTDAEIFPDKKDAERLRQDDLKAMELGRIEYLETYTTMSG 254

Query: 524 SVLEYSIIP--LPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                + +   +P+       +    +VT++ + E+ L        +AD +K+SF+ ++S
Sbjct: 255 EARTVTTMKTVVPSGGRYPYIIGVSWDVTETKKTEKELIAARIKAEEADRMKSSFLANMS 314

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+ L+          ++ QY + +  +S++LLNL NDILDL+ ++AG 
Sbjct: 315 HEIRTPLNAIVGFSKLIIE---ADDEYEKRQYADIVEHNSSVLLNLFNDILDLSALEAGS 371

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++L+Y  + L D+  ++ +    K  +  +R+ +           D +R+ QI   +++N
Sbjct: 372 LELSYHPVKLKDICLQLHELY-VKSVKPEVRLMLDEVDPQLCIQGDWERISQILVNLITN 430

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A+ F+S G  +            F V + G  IP +   ++F RF       Q  G GLG
Sbjct: 431 AIKFTSAGE-IHFGFQEKADMVQFYVSDTGKGIPAERVATIFQRFGKIDDFVQ--GTGLG 487

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L+I    +   GG + + S     T     +P K
Sbjct: 488 LTICRMLVEKMGGRIWVRSKQGKGTVFYFTLPVK 521



 Score = 41.5 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 6/161 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK-LSNPAFRSLWKTEENRLS 475
           E L+ ++D   K     +     +D L + + VF  +  I  L++    +  +       
Sbjct: 24  EGLSSELDSLKKGRFRERYSTRILDALPDMLTVFDHNANIVELASSPTTNHVEGTTAESI 83

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             +++R+I    +      +   +     +S  +   +L G L        E  I PL +
Sbjct: 84  INSNVRDIVPEEAYESVRQNMDKVIRTGKSSIAEHSLTLDGVLHHY-----ENRIFPLDD 138

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              +    +V+      R    +   + + + + N  + ++
Sbjct: 139 QYLLCMCRDVSQETEMARTNEAQRSEIVRLNSLMNDILNNI 179


>gi|251795530|ref|YP_003010261.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247543156|gb|ACT00175.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 591

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 165/395 (41%), Gaps = 28/395 (7%)

Query: 401 HVIVTSNPRGGTIWMFEN-LTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V      G +    N +   ++++ T+           +D++  GV +  P G+I L
Sbjct: 215 RVKVRKQDEVGELGHAINAMAESLEVQMTRIRQNESQLESVLDNMINGVMMIDPAGKILL 274

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            +     L       L        +    +    + +   L    +   +  R+ +  T 
Sbjct: 275 MSRRAGELLGISSGEL--------VGRNYAEAKQQYELSQLIQEALEGREHIREEI--TF 324

Query: 519 ELLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               + +LE +++P+    Q     + V   V A R L          + +++ FV +VS
Sbjct: 325 YFPEERLLELNLVPINQENQEFGGVLLVLADVTAIRRL----------ERMRSEFVANVS 374

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++P+  + GF + L    +         +++ I   S  L  L+ DIL L+ +++  
Sbjct: 375 HELKTPIAAVKGFAETLLGGAVND-EETARSFLQIIYDESDRLNRLIGDILALSKIESKR 433

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + L +S + ++  + +    + ++  + +I++++  +  L    AD  RL QI   +++N
Sbjct: 434 VPLYFSPVEMDSFMTKTVTMMESEAAKKSIKLQLEMEHGL-YVEADEDRLRQIMMNVIAN 492

Query: 698 AMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
            ++++ +G  V +     D       + + G  IP+     +F RF            G 
Sbjct: 493 GVNYTPEGGKVSVNIESIDEDHIRIQISDTGIGIPKKDLPRIFERFYRVDKARSRSSGGT 552

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSIV+  + LH G ++++S+    +T    +P
Sbjct: 553 GLGLSIVKHLVELHKGTIAVTSAVGVGSTFVIELP 587



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 27/165 (16%)

Query: 280 VRVLNSFGEAGIAIDVSKE------ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
           VR  +  GE G AI+   E        +    +    +L N+   + + D    +   +R
Sbjct: 218 VRKQDEVGELGHAINAMAESLEVQMTRIRQNESQLESVLDNMINGVMMIDPAGKILLMSR 277

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD--T 391
              EL  I    L                    E        + I    +  E  ++  T
Sbjct: 278 RAGELLGISSGELVG--------------RNYAEAKQQYELSQLIQEALEGREHIREEIT 323

Query: 392 WHLPNGQTLHVIVTSNPR-----GGTIWMFENLTVQVDLETKYNT 431
           ++ P  + L + +    +     GG + +  ++T    LE   + 
Sbjct: 324 FYFPEERLLELNLVPINQENQEFGGVLLVLADVTAIRRLERMRSE 368


>gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 744

 Score =  287 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 159/380 (41%), Gaps = 14/380 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +++    D  ++     +     ++ L + V     +GRI  +N  F  L + E   L  
Sbjct: 91  QHIEELADRVSQMQEAEQRFYGLLETLGDLVINRDGEGRILYANRIFGELMECEPQDL-F 149

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G  +  +    +     S G       ++S D    +  G L   S + +        + 
Sbjct: 150 GKTLHQLGVDITP---PSAGIFPEEERLSSTDVAIHTRNG-LRWFSWTEISRREGESSSV 205

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  ++T   RAE AL    E   +A   K+ F+  VS+E+R+P+  IIG   LL  
Sbjct: 206 SHWAIARDITARKRAETALVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSD 265

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+S+Q  YV  IS S++ LL L+ D+LD + ++AG ++L    +   +L+  V +
Sbjct: 266 TR---LSSEQRTYVAAISTSASALLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIE 322

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKA 712
            +A +     I +       +  + +AD  RL QI   +L NA+ F+ +G    TV    
Sbjct: 323 LMAVRAFTKKIGLGCHIAPTVPDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTVTTTI 382

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                   F V + G  I +D    +F  F        R   G GLGL+I    I+   G
Sbjct: 383 HDGAPKLAFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDAMEG 442

Query: 771 HVSISSSDEGVTTINCRIPS 790
            V++ S+     T    IP 
Sbjct: 443 TVTVDSAPGEGATFTVYIPL 462



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 10/158 (6%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
                 + E   +  ++      F  L ++L  LV +RD  G IL+AN  + +  E E  
Sbjct: 87  TPAEQHIEELADRVSQMQEAEQRFYGLLETLGDLVINRDGEGRILYANRIFGELMECE-- 144

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-KSYKIVRVLNSFGEA- 289
             Q   G++      +I          E+    T   +   N  + +    +    GE+ 
Sbjct: 145 -PQDLFGKTLHQLGVDITPPSAGIFPEEERLSSTDVAIHTRNGLRWFSWTEISRREGESS 203

Query: 290 -----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                 IA D++        L +  E     ++A + F
Sbjct: 204 SVSHWAIARDITARKRAETALVNARERAEQASIAKSRF 241



 Score = 37.6 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 10/148 (6%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             +   + +     Y +L  L   +   D    + + NR F EL E +   L     +  
Sbjct: 97  ADRVSQMQEAEQRFYGLLETLGDLVINRDGEGRILYANRIFGELMECEPQDLFGKTLHQL 156

Query: 355 LLEFL-RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
            ++    SA   PE+   +       +++  +     +W   + +       S+      
Sbjct: 157 GVDITPPSAGIFPEE---ERLSSTDVAIHTRNGLRWFSWTEISRREGESSSVSHW----- 208

Query: 414 WMFENLTVQVDLETKY-NTLVKVQGETI 440
            +  ++T +   ET   N   + +  +I
Sbjct: 209 AIARDITARKRAETALVNARERAEQASI 236


>gi|242280724|ref|YP_002992853.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123618|gb|ACS81314.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 1083

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 93/512 (18%), Positives = 200/512 (39%), Gaps = 34/512 (6%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           + D++     ++      I + + +  +   N    +L+      +        +   + 
Sbjct: 216 LEDEIRANEAMIATSPSGIIVIEDDGQVVQFNTVASQLFGYSKDEVVGQNVKILMPPNIA 275

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHK-----DTWHLPNGQTLHVIVTSNPRGGTIWM 415
           S +    + +  T +  +  V +  E  +        HL  G+          R   I +
Sbjct: 276 SRHNSFIKRHLDTGERRVIGVGREVEGQRKDGSLFPLHLAIGKMEF-----QQRVRFIGI 330

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++     E       +     ++    GV +   DGRI+  NPA   +         
Sbjct: 331 LTDISALKTAEEGLRQKHR----AVEESPVGVIIMDLDGRIEYLNPASLRIHGYHAAVEL 386

Query: 476 PGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLE---------LLSDSV 525
            G +     ++       S+ W  L A      + + K   G+L           + D  
Sbjct: 387 EGKYFNVFESSEIPTDAYSNMWAQLKAGESWKGELQNKRQDGSLVWVRQHFCPIRMEDGS 446

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ +    +        ++ +    ER   L +  +A  +   +K +F  ++S+E+R+P
Sbjct: 447 IKHYLSIQEDVTEFREHRSILEQTVRERTAELEKAKDAAEEGARVKAAFTANMSHEIRTP 506

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+GF +++       L+S+ + +V  I +S+  LL ++NDILD++ +++G   L   
Sbjct: 507 INAILGFAEVVMQD--SDLSSQTAGHVGTILSSAKSLLGIINDILDVSKMESGKFALEIV 564

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
              L + L +  +++  +  E ++++ +  D  L + F+ D  RL Q+   +  NA+ F+
Sbjct: 565 CFHLPNALADALRTLEHRADEKSLKLALDYDVNLSTRFMGDPTRLRQVVLNLAGNAVKFT 624

Query: 703 SKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             GS T+ ++         F V + G  + E     VF+ F        RR  G GLG +
Sbjct: 625 EHGSITIGVEVGDAPEILHFFVSDTGIGMTEKQVAKVFDSFSQADESTTRRFGGTGLGTT 684

Query: 760 IVESFINLHGGHVSISSSDEGVTT--INCRIP 789
           I +  + +  G + + S     +      R+P
Sbjct: 685 ISKQIVEMMDGEIWVESQLGKGSVFHFTVRMP 716



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 83/281 (29%), Gaps = 32/281 (11%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
           KL + I   + +  +    +   +  G ++  N    +     G    + +G++ K+   
Sbjct: 215 KLEDEIRANEAMIATSPSGIIVIEDDGQVVQFNTVASQLF---GYSKDEVVGQNVKILMP 271

Query: 247 EIKKR-----MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE---------AGIA 292
                     +       +     V     G  K   +  +  + G+          GI 
Sbjct: 272 PNIASRHNSFIKRHLDTGERRVIGVGREVEGQRKDGSLFPLHLAIGKMEFQQRVRFIGIL 331

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            D+S   T  + L   +  +    V + I D +  +++ N + + +     A        
Sbjct: 332 TDISALKTAEEGLRQKHRAVEESPVGVIIMDLDGRIEYLNPASLRIHGYHAAVELEGKYF 391

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNP 408
           +        ++++P       W +         E         +G  + V          
Sbjct: 392 NVF-----ESSEIPTDAYSNMWAQLKAGESWKGELQNK---RQDGSLVWVRQHFCPIRME 443

Query: 409 RGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            G     + + E++T   +  +     V+ +   ++   + 
Sbjct: 444 DGSIKHYLSIQEDVTEFREHRSILEQTVRERTAELEKAKDA 484



 Score = 38.8 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 91/292 (31%), Gaps = 20/292 (6%)

Query: 34  LLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP 93
            L  +I   +LI       + +      +S++ D++    +++  +    IV +   +  
Sbjct: 187 SLGIVILAGVLIGW--GAWRFLRLVNPVISKLEDEIRANEAMIATSPSGIIVIEDDGQVV 244

Query: 94  EIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL----VAETQN 149
           +      Q     + +    + +  +  +   + +   ++    G+   +      E Q 
Sbjct: 245 QFNTVASQLFGYSKDEVVGQNVKILMPPNIASRHNSFIKRHLDTGERRVIGVGREVEGQR 304

Query: 150 -DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
            D ++       G   F + +   GI ++++      + L           +     V  
Sbjct: 305 KDGSLFPLHLAIGKMEFQQRVRFIGILTDISALKTAEEGLRQK----HRAVEESPVGVII 360

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKA----IGESRKLFKEEIKKRMISSSALEKNFCE 264
            D  G I + N +  +       V  +     + ES ++  +          A E    E
Sbjct: 361 MDLDGRIEYLNPASLRIHGYHAAVELEGKYFNVFESSEIPTDAYSNMWAQLKAGESWKGE 420

Query: 265 TVSTLEHGNNKSYKIV--RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
             +  + G+    +     +    G     + + +++T   +      IL  
Sbjct: 421 LQNKRQDGSLVWVRQHFCPIRMEDGSIKHYLSIQEDVT---EFREHRSILEQ 469


>gi|150009899|ref|YP_001304642.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938323|gb|ABR45020.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1041

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/509 (19%), Positives = 222/509 (43%), Gaps = 38/509 (7%)

Query: 304 QLTHTYEILHNLTVAI----AIFDQ-----NRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            + +   +++++ +       +FD+     +  +   N +   L + D +++    S   
Sbjct: 407 FMRNYSRLVNSMPICYMKQRILFDEKEYPTDYVILELNPALEALLKCDKSYIGKKGSEIH 466

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            L+  R          +      IFS  ++ + +   ++ P     +V++ S    G + 
Sbjct: 467 PLQMSR----------YLKVCHLIFS--ENKKINTQYYYKPTDCYFNVLIISANTPGCVD 514

Query: 415 MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS------NPAFRSLW 467
           +F  +++     +    T+ +    ++D  +     +       L       N  F  L+
Sbjct: 515 IFMVDVSELAKTQQVLRTVNQKLSMSLDVANVTPWKWDLVQHTILCDVNKAVNVNFSGLF 574

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-----KSLQGTLELLS 522
              +  +    +   I         ++    +   +    ++ R     K L G   + +
Sbjct: 575 DENQLTVPDTEYFSKIYKEDREKVRKAYESLILGKVNKIKEEYRIYNPNKGLHGLEWVEA 634

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            + +E           + + + ++D    ER L E      +++ +K++F+ ++S+E+R+
Sbjct: 635 CAAVEKKDENGKPLTLVGSSLIISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRT 694

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+++L  + +  L  KQ +Y E I  ++ +LL L+NDILDL+ ++AG ++  Y
Sbjct: 695 PLNAIVGFSNILAETDV--LEEKQ-EYAEIIENNNALLLQLINDILDLSKIEAGTLEFVY 751

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S + +N LL+++++S++ ++   N+R+      K       + RL+Q+   +L+NA+ F+
Sbjct: 752 SDVDVNTLLSDLERSMSKRVVNENVRLVFERKEKDCYVSIAKNRLMQVIINLLTNAIKFT 811

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS     +  +     F V + G  I  +  +++F+RFV      Q  G GLGLSI  
Sbjct: 812 DQGSISYGYSCLNKKMLRFYVSDTGRGISVEQQEAIFDRFVKLDSFAQ--GTGLGLSICR 869

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             ++  GG + + S     +T     P K
Sbjct: 870 MIVDHLGGEMGVESEIGKGSTFWFTFPYK 898


>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1038

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 119/257 (46%), Gaps = 25/257 (9%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L         A++ K+ F+ ++S+E+R+P+  +IG T LL  +    L ++Q  +VE I
Sbjct: 275 ELQAAKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNT---PLEAQQQDFVETI 331

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
            +S   LL L+NDILD + ++AG + L      +   + E    +A+K  E N+ +  +I
Sbjct: 332 RSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKNLELAYLI 391

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------------------LKAA 713
           +     + + D  RL Q+   +L+NA+ F+ +G  V+                   + A 
Sbjct: 392 NPPTPTAILGDITRLRQVLVNLLNNALKFTGEGEVVVYVSSKPIESKDLDAESDLEVIAE 451

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
               +  F VK+ G  IP D  + +F  F        R   G GLGL+I +    L GG 
Sbjct: 452 ATPYEIQFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGGK 511

Query: 772 VSISSSDEGVTTINCRI 788
           + +SS     +T +  I
Sbjct: 512 IWVSSEVSVGSTFSFTI 528


>gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1134

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/320 (27%), Positives = 156/320 (48%), Gaps = 10/320 (3%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +    +   + ++        + S  +E ++ Q  L+  ++  LE     L   +T +
Sbjct: 346 EQLQHKQAELKHNNEELQSQTEELQSQSEELQTQQEELKQTNEE-LEERTKELERQKTDM 404

Query: 541 TFVNV------TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              N        +  + + AL  K   L  A   K+ F+ ++S+ELR+PL +++    LL
Sbjct: 405 QQKNFALEQTQVEMQKTQVALETKANELELASRYKSEFLANMSHELRTPLNSLLILAQLL 464

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +K G+L  KQ +Y + I ++   LL L+NDILDL+ V+AG ++++ + I L +LL  +
Sbjct: 465 ANNKPGNLTDKQIEYAKTIHSAGADLLTLINDILDLSKVEAGQVEIHANDISLTNLLETI 524

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +Q       +  +  ++ I++  L +   D QRL QI + +LSNA  F+ +G+  ++   
Sbjct: 525 EQKFRPIAEQQELNFQITIAEESLTTLYTDGQRLKQILNNLLSNAFKFTQQGNIKLIVQK 584

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            +     FSV + G  IP++    +F  F       QRR  G GLGLSI   F  L GG 
Sbjct: 585 SEADFISFSVSDTGIGIPQEKQNIIFEAFQQVDGSNQRRYGGTGLGLSISRQFARLLGGE 644

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S +   +T    +P K
Sbjct: 645 ITLHSEEGKGSTFTFSLPEK 664


>gi|317475821|ref|ZP_07935078.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907981|gb|EFV29678.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 629

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 112/533 (21%), Positives = 217/533 (40%), Gaps = 30/533 (5%)

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
            GN+K Y I  V +    +      S    +  +    + I  NL V I +++    L  
Sbjct: 105 KGNSKVYGIAEVQDGPYMS------SASQLLQQRELLLHNIYKNLPVGIELYNMQGVLTD 158

Query: 331 HNRSFVELWEID--LAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKE-NIFSVYKSSE 386
            N   +E++ +      L  N  ++ +  + ++   +  E  ++    + +    Y +S+
Sbjct: 159 LNDKELEMFHLQQKEDLLGINIFDNPIFPDEMKEKLRKFEDADFTFRYDFSKIGNYYNSQ 218

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
               T  L    T        P    + +  + T       K            ++   G
Sbjct: 219 KKTGTMELVTKVTTLYDEHHTPINY-LLINADKTEATIAYNKIQEFESFFKLIGNYAKVG 277

Query: 447 VAVFGP-----DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            A +       D +       + ++ + EE  LS    + N      R+Y      +   
Sbjct: 278 YAHYNLLTQKGDAQHSW----YINIGEKEETPLSDIIGVYNHIHPDDRHYMLDFLNNARK 333

Query: 502 AIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEK 558
                F+ E + L+  G+      ++L     P  N+ + +    ++T     E  L + 
Sbjct: 334 GTENKFNKEVRVLRENGSCSWTHVNLLVKVYAPEQNSIELICINYDITRLKETEAMLIQA 393

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   ++D +K++F+ ++S+E+R+PL  IIGF+ LL          ++  Y+  I+ ++ 
Sbjct: 394 KEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLL---PYMEDAKEREYYISLINHNNK 450

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LLN++N++LDL+ ++AG M+L      L++L++E      + + E  + +K        
Sbjct: 451 LLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVPE-GVTLKKRYPASPC 509

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  R+ QI S +LSNA+  +++G  V +    +      SV + G  IP++    +
Sbjct: 510 LIEQDSMRIKQILSNLLSNALKNTTQG-YVEVSYETEQSGVKISVTDTGRGIPQEKLGVI 568

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF       Q  G GLGLSI +S I    G + ++S     +T     P +
Sbjct: 569 FERFEKADSYIQ--GAGLGLSICKSIIEQMNGTIEVASVLGEGSTFTVTFPCR 619


>gi|13472804|ref|NP_104371.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
 gi|14023551|dbj|BAB50157.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
          Length = 760

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 91/410 (22%), Positives = 168/410 (40%), Gaps = 23/410 (5%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETK--------YNTLVKVQGETIDHLSEGVA 448
           G  LH+    +     + + E  T +   E +             +     ID L + V 
Sbjct: 79  GLALHLHARRSVHRTVVLLDET-TARSRAEIETLADRMWEMQESEERFRGLIDALGDLVI 137

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
               DG I  +N  F  L +T++  L+     + +A          D        ++S D
Sbjct: 138 HRDRDGYIVYANKVFADLVETDQRDLAG----KTLAELGIEVGIVPDAAFSDHECLSSTD 193

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              ++  G     S   L         A       ++T   RAE +L    E    A + 
Sbjct: 194 VAIRTPGGP-RWFSWIELSVRDKDSGAASHRAIARDITARKRAESSLITARERAEYASQA 252

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  VS+E+R+P+  I+G   LL  +   SL+ +Q  YV  IS S++ LL L+ D+L
Sbjct: 253 KSRFLATVSHEIRTPMNGIMGMARLLADT---SLSPEQQTYVGAISTSASALLALIEDLL 309

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++AG        + + ++ + + + +A +    +I +    +  +   + AD  R+
Sbjct: 310 DYSKIEAGRFDPEPQPMSVREIADNIIELLAARAFAKDIGLGCHVEPDVPQLITADPGRV 369

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            Q+   ++ NA+ F+  G  ++  A      +    F++ + G  + E+  + +F  F  
Sbjct: 370 RQVLLNLIGNAIKFTDGGGVLVSIARARSETSDRICFTITDTGPGLREEDMERIFEEFEQ 429

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 R   G GLGL+I +  +   GG +S+SS     +     IP+ E
Sbjct: 430 ADGTSTRAHGGAGLGLAISKRLVAAMGGTISVSSRLGQGSEFVFEIPATE 479



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 140 SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETTLKCKKLSNHISVFKVL 198
           S  L+A      A+ +  R S     + +        +E+     +  ++      F+ L
Sbjct: 69  SLALLATGLAGLALHLHARRSVHRTVVLLDETTARSRAEIETLADRMWEMQESEERFRGL 128

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            D+L  LV HRD+ G I++AN  +    ET+    +   G++      E+     ++ + 
Sbjct: 129 IDALGDLVIHRDRDGYIVYANKVFADLVETD---QRDLAGKTLAELGIEVGIVPDAAFSD 185

Query: 259 EKNFCET-VSTLEHGNNKSY---KIVRVLNSFGEA---GIAIDVSKEITVNDQLTHTYEI 311
            +    T V+    G  + +   ++       G A    IA D++        L    E 
Sbjct: 186 HECLSSTDVAIRTPGGPRWFSWIELSVRDKDSGAASHRAIARDITARKRAESSLITARER 245

Query: 312 LHNLTVAIAIF 322
               + A + F
Sbjct: 246 AEYASQAKSRF 256



 Score = 38.8 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 55/175 (31%), Gaps = 21/175 (12%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-------ILHNLTVAIAIFDQNR 326
            +S     VL        A   ++  T+ D++    E       ++  L   +   D++ 
Sbjct: 87  RRSVHRTVVLLDETT---ARSRAEIETLADRMWEMQESEERFRGLIDALGDLVIHRDRDG 143

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL--NWKTWKENIFSVYKS 384
           Y+ + N+ F +L E D   LA       L E       +P+    + +       ++   
Sbjct: 144 YIVYANKVFADLVETDQRDLAGK----TLAELGIEVGIVPDAAFSDHECLSSTDVAIRTP 199

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                 +W       L V    +       +  ++T +   E+   T  +     
Sbjct: 200 GGPRWFSW-----IELSVRDKDSGAASHRAIARDITARKRAESSLITARERAEYA 249


>gi|167037241|ref|YP_001664819.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115660|ref|YP_004185819.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856075|gb|ABY94483.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928751|gb|ADV79436.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 456

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 22/364 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N         +  +  GV  F  + +I L N A R +   +E  L  G HI  I   
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDL-IGRHILEIVR- 162

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  S   D F  +  + +   KSL+  +      V    I+   + Q +   + + 
Sbjct: 163 ------NSKLHDFFEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIID 216

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     R            ++I++ FV +VS+ELR+PLT+I GF + L+   + +  ++ 
Sbjct: 217 DITEMRRL-----------EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQAR- 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++ I   S  L  L+NDIL L+ ++          I L++ + ++   +       N
Sbjct: 265 DKFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKN 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +K   +        ++ R  Q+   ++ N + ++ +G  V +    +    I +V++N
Sbjct: 325 ITLKKDLNCTDLVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIVTVEDN 384

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F RF        R   G GLGL+IV+  +    G + + S     T  
Sbjct: 385 GIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKF 444

Query: 785 NCRI 788
             + 
Sbjct: 445 IIKF 448



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 23/227 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +ND+      IL ++   +  FD N  +   N +  ++  I    L        +LE 
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDLIGRH----ILEI 160

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +R++        ++  K+N  S  KS E +    HL    +  +   S+   G + + ++
Sbjct: 161 VRNSKL---HDFFEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIIDD 217

Query: 419 LTVQVDLETKYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +T    LE   +  V          +  +  G      +G I   NP  R          
Sbjct: 218 ITEMRRLEKIRSEFVANVSHELRTPLTSIR-GFIETLRNGAID--NPQARD--------- 265

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                I   +   +R  N+         +   +  E   L   +E +
Sbjct: 266 KFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDI 312


>gi|284035554|ref|YP_003385484.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283814847|gb|ADB36685.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1309

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 122/714 (17%), Positives = 260/714 (36%), Gaps = 68/714 (9%)

Query: 114 SFENWLKFHHYIKLSKATEKLRKEG-------QSFDLVAETQNDCAIKIEGRVSGSCAFL 166
           SF   +     I   +   +L   G         F  V  T            +    F 
Sbjct: 208 SFYELVHPDDLIDTQREVAQL-ANGKKTINFVHRFRCVDGTYCYLQWVATPEPATGYVF- 265

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
                 GI   + E   +  +L++  + F+  F++   L+   D  G +L  N++  +  
Sbjct: 266 ------GIARNVTEEKQRELRLNHSEAKFRTFFENSQGLLCIHDLTGKMLSVNMAGAQAL 319

Query: 227 --ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
             + + +V ++         +E + + +  +    +      +  + G+ + +    +L 
Sbjct: 320 GYQPDELVGRRLADIVSMDHQEGLARYLQIAHTKGRASGLMHTLHKDGSLRIWLFNNILE 379

Query: 285 SFGE-----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
              +      G AID+++   +  +L  T ++L      +A       + F     V + 
Sbjct: 380 RDLDEQPYILGNAIDITERHRLEVELNRTQQMLSQTNE-VA------RIGFWE---VNVL 429

Query: 340 EIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL- 394
           E  + + A   S  E+ +     L +A    +  +    +  +    +    +     + 
Sbjct: 430 EQTIHWSAVTRSIHEVSDDFIPNLETAIYFFKGDHQVIIRNAVTRAIEEGVGYDLELQIV 489

Query: 395 -PNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
              GQT+ V     P             F+++  +  +E    T        + H    V
Sbjct: 490 TAKGQTVWVRALGIPEFDQGRCLRLYGTFQDIDEKKKVEQALLTEKLRLAAFVKHAPAAV 549

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           A+F         +  +   ++     +    +   +  T    +       +  A+    
Sbjct: 550 AMFDLQMNYIAVSNRWMEDYQLTGTIIGRCHY--EVFPTTPEAWKAIHARCIQGAVEKKE 607

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEAL 562
           +D  + L  T     D  + + + P           M+   ++T+       L +     
Sbjct: 608 EDVWRPLGWT----HDQYVRWEVRPWYQFDGTIGGIMMLTQDITEICLQRDELKKAKLVA 663

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A + K+ F+ ++S+E+R+PL  +IGFTDL+  +   +L   Q QY+  ++ S+  LL 
Sbjct: 664 EQASQAKSEFLANMSHEIRTPLNGVIGFTDLVLKT---TLTPTQHQYLTIVNQSANALLT 720

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
            +NDILD + ++AG ++L    + + +L ++  + I  +     + + +     +     
Sbjct: 721 TINDILDFSKIEAGKLELTIEKVDIYELTSQAAEIITYQAQTKGLEVLLNVAPDVPRFIY 780

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NGDFIFSVKNNGSSIPEDMC 735
            D  RL Q+   +L NA+ F+ +G  + LK           G   F+V++ G  I  DM 
Sbjct: 781 TDSVRLKQVLVNLLGNAVKFTQQGE-IELKVTATSVSEPGEGAIRFAVRDTGMGIRADMQ 839

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +F+ F        +   G GLGL+I    + L G  + + S     +     
Sbjct: 840 QKIFHAFSQEDPSTTKKFGGTGLGLTIANKLLGLMGSQLELISEPGAGSCFYFT 893


>gi|196249864|ref|ZP_03148560.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|196210740|gb|EDY05503.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 609

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 154/385 (40%), Gaps = 26/385 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + H+++GV      GR+ L N A  ++  
Sbjct: 238 GQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +   + I ++     +Y         F  ++   D          EL    +L  
Sbjct: 298 VSRETVLS-SSIVDVLGIADQY--------TFETLLEEHDSLILDFSTDEELY---ILRA 345

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+  +     ++  + V      E+          K D  +  FV +VS+ELR+PLT + 
Sbjct: 346 SLSVIQKEGGLINGLIVVLHDVTEQE---------KIDRERRQFVANVSHELRTPLTTMK 396

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             ++++ +   +  ++ LVND+L L+ +D+   KL  + I  +
Sbjct: 397 SYLEALADGAWQD-KEITPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWINFS 455

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
              +++          +NIR       +      D  ++ Q+   I+SNA+ +S +G T+
Sbjct: 456 AYFHKIIDRFE-LTKSDNIRFVRNIPREAIFIEVDEDKITQVLDNIISNAIKYSPQGGTI 514

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             +      + I S+ + G  IP+     +F RF        R   G GLGL+I +  + 
Sbjct: 515 TFRVRELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKELVI 574

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG +   S +   TTI   +P +
Sbjct: 575 AHGGTIWAESKEHKGTTIYFTLPLE 599



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 79/229 (34%), Gaps = 31/229 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N + + +  +    + ++   D L
Sbjct: 253 EAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIVDVL 312

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                    + +Q  ++T  E   S+     T ++ + L    ++ +        G I +
Sbjct: 313 G--------IADQYTFETLLEEHDSLILDFSTDEELYILRASLSV-IQKEGGLINGLIVV 363

Query: 416 FENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF- 463
             ++T Q  +D E +           T +      ++ L++G      D  I    P F 
Sbjct: 364 LHDVTEQEKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW---QDKEIT---PRFI 417

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW----DLFAAIITSFD 508
           + +    E  +     + +++   S+ Y     W      F  II  F+
Sbjct: 418 QVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKIIDRFE 466


>gi|217037913|gb|ACJ76428.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 179/394 (45%), Gaps = 30/394 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + LT++ +L  +            ++  + + +     ++   N ++  L       +
Sbjct: 257 LIQTLTIKREL-IRSEKEKTKLALVAEYAHDAIFILDKQSKLTWINQSYSVLSGNTLEDI 315

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIIT----SFDDERKSLQGTLELLSDSVLEYSI 530
             G  + ++          ++ + L  ++ T    SF+       GTL       ++ S+
Sbjct: 316 K-GKDLPSVLQL--DKIQHANIFTLLQSLKTGTSVSFELTNNHKDGTLY-----WIDVSV 367

Query: 531 IPL--PNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P+  PN   M       ++T     E  L +  +    +++ K++F+  +S+ELR+PL 
Sbjct: 368 TPIFKPNGNIMHYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLN 427

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G   +++++     + +Q + ++ +  S   LL+L+NDILD + ++   ++LN+++ 
Sbjct: 428 GILGMAQIIESNIK---DEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASF 484

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             ND+++ +  +  +   +  ++  + ++  +   F+ D+ R+ QI   ++SNA+ F+ K
Sbjct: 485 YFNDVIDPIANTYLSICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHK 544

Query: 705 GSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
           GS + L  +              V++ G  I +   K +F  F+       R   G GLG
Sbjct: 545 GS-ITLNFSHTLTPKGEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLG 603

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L+IV+   +   G++S++SS+   T     +P +
Sbjct: 604 LAIVKQLTDTMKGYISVNSSEGKGTCFTLVLPLE 637


>gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 985

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 101/474 (21%), Positives = 175/474 (36%), Gaps = 62/474 (13%)

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP------RGGTIWMFENL 419
           P+  +            KS+   +    L +G   H+   ++P      R   I +  N+
Sbjct: 367 PQDRDRVVKSLEAAERSKSNFASEFRILLDDGSVKHIRALASPFTDTQGRSWMIGVNWNV 426

Query: 420 TVQVDLETKY----------NTLVKVQGETID---------------------HLSEGVA 448
           +  V L  +           NT +K     ++                     H S+ + 
Sbjct: 427 SEDVRLREELIHANQALSERNTELKEGKRALEDAHAELQKQQAELHRLSLVAKHASDSII 486

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           +     +I   N AF                   I  T S   +  D        +    
Sbjct: 487 LTDASRKILWVNDAFTRATGYSAG--------EAIGRTPSDLLDGPDTDLSVVREMNRHK 538

Query: 509 DERKSLQGTL----ELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKN 559
           D        +    +   +   + +I+P+  A       +    ++T S + ER L E  
Sbjct: 539 DGGIRYHNEVLNYTKSGEEVWFDTNIVPVTGADGEVDLIIGIERDITRSKQRERELAEAK 598

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            A   AD  K+ F+ ++S+E+R+P+  IIG  DLL       L +   Q VE I +S+  
Sbjct: 599 LAAEHADRAKSEFLANMSHEIRTPMNGIIGMADLLAE---AELTADDQQNVETIRSSAQA 655

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           LL ++NDILDL+ ++AG   ++     L D +         K  E  + ++V  ++G   
Sbjct: 656 LLKIINDILDLSRLEAGKFAISREDFNLRDCIGGAADLFRPKALEKGLSMQVSYANGLPD 715

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK-AARDNGDFIFSVKNNGSSIPEDMCK 736
               D  RL QI   ++ NA+ F+  G   V +  A  D    +  V+++G  I E   K
Sbjct: 716 RLHGDDGRLRQILVNLIGNAVKFTPDGKIAVRVSQAGEDPCRLVVEVEDSGIGISETQAK 775

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F+RF        +   G GLGL+I        GG +++ S     +     +
Sbjct: 776 HIFDRFTQADAATTKAFGGTGLGLTISSMLAKRMGGGITVQSQPGKGSCFRLEL 829



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 59/313 (18%)

Query: 48  RNSLAKKVN--ETYSFLSEICDQLSKYHSLLTENNCLTIVW--DGKDETPEIIGQLHQRI 103
           R S A++    +     +E+     +    +        +W  D  ++      ++H+  
Sbjct: 290 RLSAARQTVIGQLRRREAELEAVSRRLE--IAVKTSRVGIWECDAGNKRVSWDSRMHELY 347

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS-------FDLVAETQNDCAIKIE 156
            +P+     L+   W+   H     +  + L    +S       F ++ +  +   I+  
Sbjct: 348 GVPREQGP-LAGSAWIAKLHPQDRDRVVKSLEAAERSKSNFASEFRILLDDGSVKHIRAL 406

Query: 157 GRV---SGSCAF-----------LRILS--------LDGIYSELAETTLKCKKLSNHISV 194
                 +   ++           +R+          L    +EL E     +     +  
Sbjct: 407 ASPFTDTQGRSWMIGVNWNVSEDVRLREELIHANQALSERNTELKEGKRALEDAHAELQK 466

Query: 195 FKVLFD-------SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKE 246
            +                +   D +  ILW N ++ + T   G    +AIG +   L   
Sbjct: 467 QQAELHRLSLVAKHASDSIILTDASRKILWVNDAFTRAT---GYSAGEAIGRTPSDLLDG 523

Query: 247 EI------KKRMISSSALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEA----GIAID 294
                   ++         +   E ++  + G    +   IV V  + GE     GI  D
Sbjct: 524 PDTDLSVVREMNRHKDGGIRYHNEVLNYTKSGEEVWFDTNIVPVTGADGEVDLIIGIERD 583

Query: 295 VSKEITVNDQLTH 307
           +++      +L  
Sbjct: 584 ITRSKQRERELAE 596


>gi|138897043|ref|YP_001127496.1| sensory box histidine kinase YycG [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268556|gb|ABO68751.1| Sensory box histidine kinase YycG [Geobacillus thermodenitrificans
           NG80-2]
          Length = 609

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 154/385 (40%), Gaps = 26/385 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + H+++GV      GR+ L N A  ++  
Sbjct: 238 GQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +   + I ++     +Y         F  ++   D          EL    +L  
Sbjct: 298 VSRETVLS-SSIVDVLGIADQY--------TFETLLEEHDSLILDFSTDEELY---ILRA 345

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+  +     ++  + V      E+          K D  +  FV +VS+ELR+PLT + 
Sbjct: 346 SLSVIQKEGGLINGLIVVLHDVTEQE---------KIDRERRQFVANVSHELRTPLTTMK 396

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             ++++ +   +  ++ LVND+L L+ +D+   KL  + I  +
Sbjct: 397 SYLEALADGAWQD-KEITPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWINFS 455

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
              +++          +NIR       +      D  ++ Q+   I+SNA+ +S +G T+
Sbjct: 456 AYFHKIIDRFE-LTKSDNIRFVRNIPREAIFIEVDEDKITQVLDNIISNAIKYSPQGGTI 514

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             +      + I S+ + G  IP+     +F RF        R   G GLGL+I +  + 
Sbjct: 515 TFRVRELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKELVI 574

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG +   S +   TTI   +P +
Sbjct: 575 AHGGTIWAESKEHKGTTIYFTLPLE 599



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 79/229 (34%), Gaps = 31/229 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N + + +  +    + ++   D L
Sbjct: 253 EAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIVDVL 312

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                    + +Q  ++T  E   S+     T ++ + L    ++ +        G I +
Sbjct: 313 G--------IADQYTFETLLEEHDSLILDFSTDEELYILRASLSV-IQKEGGLINGLIVV 363

Query: 416 FENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF- 463
             ++T Q  +D E +           T +      ++ L++G      D  I    P F 
Sbjct: 364 LHDVTEQEKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAW---QDKEIT---PRFI 417

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW----DLFAAIITSFD 508
           + +    E  +     + +++   S+ Y     W      F  II  F+
Sbjct: 418 QVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKIIDRFE 466


>gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 477

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/422 (20%), Positives = 164/422 (38%), Gaps = 23/422 (5%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           W   +    +            +G   +++   +  G            V  +    +  
Sbjct: 75  WSGQLAKTLEEYTRVVHRLEAGHGACHYLMDQPDELGRLARAIHQTVETVRTKIHQLSQD 134

Query: 434 KVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           K + ETI + + EGV  F   GRI L N A   + + +  R+     +          + 
Sbjct: 135 KTKFETILESMIEGVVGFDHMGRILLMNSAAEQMLRVQSERVRGKLLLEA--------FR 186

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
             +   L    + +   ++K +Q  L           ++P+   Q  L    +      E
Sbjct: 187 HRELEGLLTQALNTGKAQKKQMQ--LWPNKPQTFRVQVVPVWTDQRRLLGAAMVIDDVTE 244

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
                    +R+ ++++  FV +VS+ELR+PLT+I GF + L    L        +++  
Sbjct: 245 ---------VRRLEQMRTEFVANVSHELRTPLTSIKGFVETLLDGALDD-TKVARRFLSI 294

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+  +  L  L+ D+L L+ +++ + ++      L   +  V+  +     +  I ++V 
Sbjct: 295 INEETQRLQRLIEDLLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEPIAADKRIALQVD 354

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +  L         L Q+   +  NA+ ++ +G  V ++A R     I  V++ G  IPE
Sbjct: 355 VETNLPLLPLSPDNLKQVLVNLTENAIKYTPEGGQVSVRATRGCDSVILEVQDTGIGIPE 414

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F RF        R   G GLGL+IV+  I   GG V++ S     +T     P 
Sbjct: 415 ESLPRIFERFYRVDKARSRELGGTGLGLAIVKHIIERSGGRVTVQSKVGVGSTFTVTFPV 474

Query: 791 KE 792
            E
Sbjct: 475 AE 476



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 72/245 (29%), Gaps = 30/245 (12%)

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI------TVNDQLTHTYEILH 313
           + +   V  LE G+   + ++   +  G    AI  + E        ++   T    IL 
Sbjct: 84  EEYTRVVHRLEAGHGACHYLMDQPDELGRLARAIHQTVETVRTKIHQLSQDKTKFETILE 143

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           ++   +  FD    +   N +  ++  +    +        LLE  R           + 
Sbjct: 144 SMIEGVVGFDHMGRILLMNSAAEQMLRVQSERVRGK----LLLEAFRHREL-------EG 192

Query: 374 WKENIFSVYKSSETHKDTWHLPNG-QTLHVIVTS-----NPRGGTIWMFENLTVQVDLET 427
                 +  K+ +     W  PN  QT  V V           G   + +++T    LE 
Sbjct: 193 LLTQALNTGKAQKKQMQLW--PNKPQTFRVQVVPVWTDQRRLLGAAMVIDDVTEVRRLEQ 250

Query: 428 KYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
                V          +  +  G      DG +  +  A R L    E        I ++
Sbjct: 251 MRTEFVANVSHELRTPLTSIK-GFVETLLDGALDDTKVARRFLSIINEETQRLQRLIEDL 309

Query: 484 AATCS 488
                
Sbjct: 310 LQLSR 314


>gi|168211770|ref|ZP_02637395.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170764305|ref|ZP_02640759.2| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170710282|gb|EDT22464.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170713459|gb|EDT25641.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 821

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 166/381 (43%), Gaps = 9/381 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    ++T +  +E       +      +++ + +     +G+I   N A   +    E 
Sbjct: 412 VLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDFEGKISYVNKAVIDVLGYSEE 471

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L    +   +    +    +S  ++    +       +K L   LE +S  + +     
Sbjct: 472 ELIGKNYYDLLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQ-LESISSRIKDNK--- 527

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N    +      + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     
Sbjct: 528 -NNTLGWVRVARNIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQ 586

Query: 593 LLKTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           LL TSK    N  +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L
Sbjct: 587 LLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKL 646

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             ++  S+   +   NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +
Sbjct: 647 TEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEV 706

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
               D       VK+ G  IP  M + +F RF+ N       + G G+GLS+V+S + LH
Sbjct: 707 SIFADETWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELH 766

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G V +  S+E  +  +  +P
Sbjct: 767 EGKVFLRESNESGSEFSILLP 787


>gi|310642599|ref|YP_003947357.1| sensory histidine protein kinase [Paenibacillus polymyxa SC2]
 gi|309247549|gb|ADO57116.1| Sensory histidine protein kinase [Paenibacillus polymyxa SC2]
          Length = 484

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 167/396 (42%), Gaps = 30/396 (7%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           +VTS+  G     F +++ +++   +  N         +  +S+ V  F   G+I L+NP
Sbjct: 97  LVTSDEIGELAKTFNHMSTELEATIRSLNEEKNHLSSVLRSMSDAVFTFDRSGQIILTNP 156

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +SL    +     G  +    A+            LF  ++   +D            
Sbjct: 157 PAQSLLDIWKKLEWQGRDLEEFGASVPEPL-----LPLFHTVMDRGED------------ 199

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              V +Y  +   +    +  +   +++R   A+        K +++++ FV +VS+E+R
Sbjct: 200 ---VGDYIHVKKGSWSVQMAPLYTDNAIRGAVAVLRDITEEVKLEKMRSDFVANVSHEIR 256

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL+ + G+++ L     GS   +  + V+ I   S  +  LV D+LDLA ++AG   + 
Sbjct: 257 TPLSMMQGYSEALLDGMAGS-PEESEELVQVIHDESLRMGRLVKDLLDLARMEAGHTDMY 315

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              + +N+L+  V +    +  E  + +     D  L    AD  RL Q+ + +L NA  
Sbjct: 316 RQEVDVNELIERVHRKFTVRSKERGLILDYYEPDQHLLLPEADEDRLEQVLTNLLDNAFR 375

Query: 701 FSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---G 753
            +  G  V + A +  G+        +K+ G  I  +    +F+RF        R    G
Sbjct: 376 HTPSGKKVTIAADQIRGERNELIRIRIKDEGVGIASEDLPYIFDRFYKADKARVRGEDKG 435

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+IV + +  HGG VS +S     T     +P
Sbjct: 436 TGLGLAIVRNIVEAHGGSVSAASVLGEGTEFTILLP 471



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 25/164 (15%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            ++N++  H   +L +++ A+  FD++  +   N     L +I           +E    
Sbjct: 122 RSLNEEKNHLSSVLRSMSDAVFTFDRSGQIILTNPPAQSLLDIWKKLEWQGRDLEEFGA- 180

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPRGGTIWM 415
                 +PE L          +V    E   D  H+  G     +  + T N   G + +
Sbjct: 181 -----SVPEPLLP-----LFHTVMDRGEDVGDYIHVKKGSWSVQMAPLYTDNAIRGAVAV 230

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVA 448
             ++T +V LE            +  T + +     + L +G+A
Sbjct: 231 LRDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMA 274


>gi|83593368|ref|YP_427120.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
 gi|83576282|gb|ABC22833.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
          Length = 866

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 97/404 (24%), Positives = 173/404 (42%), Gaps = 36/404 (8%)

Query: 418 NLTVQVDLETKYNTLVK------------------VQGETIDHLSEGVAVFGPDGRIKLS 459
           ++T +V  E    +L +                       I  + +G+ V    GRI L 
Sbjct: 322 DVTDRVKAEIALRSLNESLEAQVLTRTRDLAESEARTRAIIATMVDGLIVMDDQGRIDLF 381

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N A + ++  +E+ +        ++A  +  + E  G  L+       +  RK + G  +
Sbjct: 382 NAAAQRIFGYDESEVVGQNAALLMSAEDAAGHAEPFGLHLWDGRSPLLNGTRKVI-GRRK 440

Query: 520 LLSDSVLEYSIIPLPNAQTML---------TFVNVTDSVRAERALTEKNEALRKADEIKN 570
             +   L  +I  LP                  +++D +R E  L +  +    A+  K+
Sbjct: 441 NGASFPLAVAISALPAPPPGGAPARRLFTGVVRDISDQIRHESDLRKVKDEAEVANRAKS 500

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+PL  ++G  DLL  +    L+++Q +Y   I+ S+  LL ++NDILDL
Sbjct: 501 DFLAVMSHELRTPLNGVLGMADLLCDT---PLDAEQRRYTRTIAISAEALLVIINDILDL 557

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQ 689
           + ++AG + L         LL  V+  +     +  I ++   +G K    + D  RL Q
Sbjct: 558 SKIEAGHLDLESRPFDPATLLEGVRTLMEGPARDKAIALRTSIEGAKPPLRLGDEGRLRQ 617

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           I   + +N + F+ KGS  +   A   G   F V++ G  IP++   ++F+ F   +   
Sbjct: 618 ILLNLANNGVKFTEKGSLTLRLKAGTGGALRFEVEDTGIGIPKEKQDTLFHDFTQVSAST 677

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IP 789
            RR  G GLGLSI    + L GG +   S+    +       +P
Sbjct: 678 ARRFGGSGLGLSICRRLVGLMGGRLGFDSTPGVGSLFWFEVDLP 721



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 89/321 (27%), Gaps = 26/321 (8%)

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           EGR   S A  R   L  ++  + +   + +      +            V     +G +
Sbjct: 196 EGRGPSSEAIGRTDELGDLFRAVEDLRRRIEMSLLEAATQARFPSENPNPVIRTSDSGGL 255

Query: 216 LWANISYKKNTE--TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           L+AN S +          +    I   R+                       V       
Sbjct: 256 LYANASARLRPGFLDGETLHPTIIALVRETTGRGEIMTSEIRLGTRIYLLTAVPITHDRY 315

Query: 274 NKSY--KIVR------VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN 325
              Y   +         L S  E+  A  +++   + +    T  I+  +   + + D  
Sbjct: 316 VNIYASDVTDRVKAEIALRSLNESLEAQVLTRTRDLAESEARTRAIIATMVDGLIVMDDQ 375

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             +   N +   ++  D + +     N  LL     A    E      W      +   +
Sbjct: 376 GRIDLFNAAAQRIFGYDESEVVGQ--NAALLMSAEDAAGHAEPFGLHLWDGRSPLL---N 430

Query: 386 ETHKDTWHLPNGQTLHVIVTSNP-----------RGGTIWMFENLTVQVDLETKYNTLVK 434
            T K      NG +  + V  +            R     +  +++ Q+  E+    +  
Sbjct: 431 GTRKVIGRRKNGASFPLAVAISALPAPPPGGAPARRLFTGVVRDISDQIRHESDLRKVKD 490

Query: 435 VQGETIDHLSEGVAVFGPDGR 455
                    S+ +AV   + R
Sbjct: 491 EAEVANRAKSDFLAVMSHELR 511


>gi|17230767|ref|NP_487315.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132370|dbj|BAB74974.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 889

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 150/380 (39%), Gaps = 21/380 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + +L  +   L       +  +++       D  I   N     +   E   L    + 
Sbjct: 365 EKDELLQREQALRSRLSNILSSMTDAFIAVNRDWDITYCNHQAAKIQDLEPEDLIGKNYW 424

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                     +  + G D       S  +        L  L D  LE    P  +   + 
Sbjct: 425 EQ--------WTRTKGTDFEREYRRSLAENIPVHFEILYELWDMWLEVHAYPSEDGLGIF 476

Query: 541 TFVNVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            F N+T+  +AE+                 +A+ +K+ F+  +S+ELR+PL  I+G+  L
Sbjct: 477 -FRNITERKQAEQEREYLLMREQIARGEAERANRLKDDFLAVLSHELRTPLNPILGWATL 535

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK   L      + + +E I  ++ + + L+ D+LD++ +  G + LN  ++ L   + E
Sbjct: 536 LKKRNLEEAT--RRRGIETIERNAKLQIQLIEDLLDVSRIQQGKLSLNIQSVNLVHTIEE 593

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +++   +   +I IK      +G    D  RL QI   +L+NA+ F+     + +   
Sbjct: 594 ALETVRLAIEAKSIHIKTALGVNVGMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVVLE 653

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
           R N      +++NG  I  +    VF  F        R   G+GLGL+IV+    LHGG 
Sbjct: 654 RVNNSAQIQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGT 713

Query: 772 VSISSSDEG-VTTINCRIPS 790
           V   S+ EG        +P 
Sbjct: 714 VKAESAGEGMGAIFTVNLPL 733



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 56/144 (38%), Gaps = 14/144 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +E  +  +L++   IL ++T A    +++  + + N    ++ +++   L      ++ 
Sbjct: 371 QREQALRSRLSN---ILSSMTDAFIAVNRDWDITYCNHQAAKIQDLEPEDLIGKNYWEQW 427

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
               R+     E+   ++  ENI   ++      D W       L V    +  G  I+ 
Sbjct: 428 T---RTKGTDFEREYRRSLAENIPVHFEILYELWDMW-------LEVHAYPSEDGLGIF- 476

Query: 416 FENLTVQVDLETKYNTLVKVQGET 439
           F N+T +   E +   L+  +   
Sbjct: 477 FRNITERKQAEQEREYLLMREQIA 500


>gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 920

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 153/385 (39%), Gaps = 30/385 (7%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           Y+    +  + ++    G  +  P   I   N       +     +     +        
Sbjct: 2   YDLENTLMRQALELNGLGTIILDPQQTIVFWNAWMERGSQMFAAHVLGSKLLDVFPELQG 61

Query: 489 RYYNESDGWDLFAAIITSFDD-------------------ERKSLQGTLELLSDSVLEYS 529
              + +    L   + T                       +R S    ++ + +   E  
Sbjct: 62  SRLDRAVVSALRTGLPTMLSHRLNPTPFPLETASKNEELGQRMSQMVQIKAIRNEAGERY 121

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            + L +  T           +A R L    +  ++A+  K+ F+ ++S+E+R+P+  IIG
Sbjct: 122 CVILIHDITNTVSREQMLRNQA-RELHSAKDEAQQANRAKSDFLANMSHEIRTPMNAIIG 180

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            + L   +    LN+KQ  YV  I  S+ +LL ++NDILD + ++AG + +      L+D
Sbjct: 181 MSHLALKT---DLNAKQRDYVGKIHDSALLLLGIINDILDFSKIEAGKLSMESVAFYLDD 237

Query: 650 LLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +L+ V   ++ K+ E  + I    D G     V D  RL QI   +++NA+ F+ +G+ V
Sbjct: 238 VLSNVANLVSMKVEEKGLEISFQVDRGVPLHLVGDPLRLGQILINLVNNAVKFTEQGNIV 297

Query: 709 ILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           +   A  + +      F V+++G  + +     +F  F        RR  G GLGLSI +
Sbjct: 298 VAITAELDCESHVVVQFQVRDSGIGMTKQQIDRLFQAFSQADSSTTRRYGGSGLGLSICK 357

Query: 763 SFINLHGGHVSISSSDEGVTTINCR 787
             + +  G + + S     +     
Sbjct: 358 RLVGMMDGDIWVESQPGRGSQFTFT 382


>gi|332524691|ref|ZP_08400890.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332107999|gb|EGJ09223.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 811

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 90/501 (17%), Positives = 187/501 (37%), Gaps = 22/501 (4%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                  +L+   + +  L   I   D    L F N  ++         L      D + 
Sbjct: 320 AVALRERELSVIVKSVQEL---IFRTDAEGRLTFVNARWLAATGQPGERLLGQALVDLMA 376

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI--- 413
              R A               +      S   + ++     +   + V+    GG +   
Sbjct: 377 PSSREAV-----------AALLAPSASGSRAAQVSFAGTEQRLFDLAVSPLIEGGRVVGH 425

Query: 414 -WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
                ++T +   + +    + +    +D +   VA+   +      N A+         
Sbjct: 426 AGSAVDVTERCAAQRELQEQLALSALMLDTMPLPVALMDREAAYVTVNRAWEQQSGIPRE 485

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L        +    +  +   +   L      S++ E     GT   ++ +    +   
Sbjct: 486 DLVGKRASDYLLPAEAEVHERHNREVLERGGSLSYESEVSQADGTRRTMAVTKAAVTDAD 545

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +    ++T+   A+R + E  +   +A   K+ F+ ++S+ELR+PL  IIGF++
Sbjct: 546 GRPRGLIAALTDITEFREADRTMREARDIAEEASRAKSEFIANISHELRTPLQAIIGFSE 605

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L      G  + + +     I A+   +L LVND+LD++ +++ +   +     L  L+ 
Sbjct: 606 L--GMVRGRAHERLASMFGDIHAAGQRMLALVNDLLDVSKIESTVGTFHLERTDLRPLVR 663

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV + I   +    + + +           D  R  Q+   +L+NA+ FS  G T+ ++ 
Sbjct: 664 EVAREIDPLLARRRLHLDLALSEGPLVAKVDPMRFQQVVRNVLANAVRFSPDGETITVRG 723

Query: 713 ARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGG 770
             D     + +V+++G  IP    + +F  FV ++       G GLGL+I    +  HGG
Sbjct: 724 DVDARNQIVVAVRDHGPGIPPGELEKIFEAFVQSSKTKDGSGGTGLGLAICRKIVEAHGG 783

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            +   ++D G +     +P++
Sbjct: 784 SIQAENADGGGSRFTIAVPAR 804



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 84/278 (30%), Gaps = 32/278 (11%)

Query: 52  AKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP--EIIGQLHQRIDIPQTD 109
            ++++     + E+  +      L   N      W      P   ++GQ    +  P + 
Sbjct: 325 ERELSVIVKSVQELIFRTDAEGRLTFVNAR----WLAATGQPGERLLGQALVDLMAPSSR 380

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL 169
             + +    L        +        E + FDL         I+  GRV G        
Sbjct: 381 EAVAAL---LAPSASGSRAAQVSFAGTEQRLFDLAVS----PLIE-GGRVVG-------- 424

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
              G   ++ E     ++L   +++  ++ D++   V   D+    +  N ++++ +   
Sbjct: 425 -HAGSAVDVTERCAAQRELQEQLALSALMLDTMPLPVALMDREAAYVTVNRAWEQQSGIP 483

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNF---CETVSTLEHGNNKSYKIVRVL--- 283
                        L  E       +   LE+      E+  +   G  ++  + +     
Sbjct: 484 REDLVGKRASDYLLPAEAEVHERHNREVLERGGSLSYESEVSQADGTRRTMAVTKAAVTD 543

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
                 G      D+++    +  +    +I    + A
Sbjct: 544 ADGRPRGLIAALTDITEFREADRTMREARDIAEEASRA 581


>gi|91976421|ref|YP_569080.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
 gi|91682877|gb|ABE39179.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
          Length = 607

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 166/382 (43%), Gaps = 24/382 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE-----NRLSPGTHI 480
           E +Y  L         H+S+ ++    +G ++  +PA  +L          + L    H+
Sbjct: 203 EERYRLLAL-------HMSDVISRHSRNGAVQFISPAVETLLGLPAARLAGHGLFDRVHV 255

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL------- 533
            +  A      +   G +  +       +  +  +G         LE    P        
Sbjct: 256 ADRPAYLKALSDAGLGGEGRSVEFRVRREVARDDRGRPTAPEFIWLEMRCRPFAPGTQSS 315

Query: 534 --PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                  +    +VTD    E+AL +      +AD  K+ F+  +S+ELR+PL  IIGF+
Sbjct: 316 AAGETGVVAVMRDVTDRKLQEQALEQARAEASRADASKSRFLATMSHELRTPLNAIIGFS 375

Query: 592 DL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           D+ L   +L     ++ +Y + I+ S   LL++VN ILD++ +++G  ++          
Sbjct: 376 DMILHEDELMLAPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPA 435

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L      +A K  EN I +   +   L   V D +   QI   ++SNA+ F+ +G TV +
Sbjct: 436 LLNCCNLLALKARENGIELVTRAPEDLPEIVGDARAFKQILLNLVSNAIKFTERGGTVSV 495

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
           +AA +    +  V++NG  I  +  K + + F         +  G GLGLSIV+S + LH
Sbjct: 496 EAAVEAARLVLRVRDNGVGIAAEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLH 555

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + ++S  +  T +   +P 
Sbjct: 556 GGKIDVTSEVDRGTIVTISLPL 577


>gi|15644402|ref|NP_229454.1| sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|4982228|gb|AAD36721.1|AE001807_12 sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|1575578|gb|AAC44437.1| histidine protein kinase [Thermotoga maritima]
          Length = 412

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 167/389 (42%), Gaps = 33/389 (8%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +++FE L   VD   +  + V+V  +     ++ LSE + +   +G+I   N   R L +
Sbjct: 46  LYLFERLKKYVDNLKETISRVEVSRDNFLTILNSLSEPIFILDREGKITFLNEIARELVQ 105

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              N      +           + +    ++    I S + +  +L  T           
Sbjct: 106 GRINPEGRPYY---------EIFEDYYINEMVEETIKSEEPQEGTLV-TYVGNEKKYFHV 155

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +IP+        FV +   V  ER L          DE++  F+  VS+ELR+PLT+I 
Sbjct: 156 KVIPVELKSGDKIFVILFHDVTKERKL----------DEMRREFIATVSHELRTPLTSIH 205

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ + L    L +      ++++ I   S  +  L+ND+LDL  ++          + L 
Sbjct: 206 GYAETLLEDDLEN-KELVKRFLKIIEEESARMTRLINDLLDLEKIEESEANFEMKDVDLC 264

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS---SKG 705
           +++  V + I     EN + + V  +  +     +++RL+Q+   ++ NA+ ++    KG
Sbjct: 265 EVIEYVYRIIQPIAEENEVDLIVECEDVV--VRGNKERLIQMLLNLVDNAVKYTSLKEKG 322

Query: 706 ST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
              V ++A       +  V++ G  IP++    +F +F         +  G GLGL+IV+
Sbjct: 323 EKKVWVRAYDTPDWVVVEVEDTGPGIPKEAQSRIFEKFYRVDKARSRKMGGTGLGLTIVK 382

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + ++ HGG + + S     T +   +P +
Sbjct: 383 TIVDKHGGKIEVESEINQGTLMRVLLPKR 411



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +S+     D       IL++L+  I I D+   + F N    EL  +            E
Sbjct: 63  ISRVEVSRDNF---LTILNSLSEPIFILDREGKITFLNEIAREL--VQGRINPEGRPYYE 117

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + E       + E +  +  +E     Y  +E  K  +H+   + + V + S      + 
Sbjct: 118 IFEDYYINEMVEETIKSEEPQEGTLVTYVGNE--KKYFHV---KVIPVELKS-GDKIFVI 171

Query: 415 MFENLTVQVDLETKYNTLVKV 435
           +F ++T +  L+      +  
Sbjct: 172 LFHDVTKERKLDEMRREFIAT 192


>gi|322693017|gb|EFY84895.1| putative histidine kinase HHK6p [Metarhizium acridum CQMa 102]
          Length = 1372

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 113/668 (16%), Positives = 236/668 (35%), Gaps = 93/668 (13%)

Query: 197  VLFDSLDFLVWHRDQAGDILWANISYKKN----TETEGIVFQKAIGESRKLFKEEIKKRM 252
             L D+    +    + G +++ N + ++      + +       +     L+ E   +++
Sbjct: 376  ALLDNHQMPILAIWKDGSVIFPNKASRQLLSLDADLDSCDDGLDLLRKWDLWDENFTRKL 435

Query: 253  ISS-------SALEKNFCETVSTLEH--GNNKSYKIV------RVLNSFGEAGIA-IDVS 296
              S          E+ F      +    G    + ++       V   F  A +   DV+
Sbjct: 436  DVSEYPISVLLRTERPFASMRVGIVDRDGKRLIHDVLGEAIRDDVTGEFLAAVVTGRDVT 495

Query: 297  KEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
                   Q+    +     I   +   +     +    F N  +     +          
Sbjct: 496  VITEQITQIKERDDERFKLICDTMPQLVWTASPDGLHDFFNTRWYSYTGLRPE------- 548

Query: 352  NDELLEFLRSANKLPEQLNWKT-----WKENI-----FSVYKSSETHKDTWHLPNGQTLH 401
                 E L    ++P   + +      WK ++     F +     + +  W    G+ L 
Sbjct: 549  -----ECLGMEWQMPFHPDDRNEALTRWKRSLETGEPFVMEYRCRSKEGEWRWFLGRALA 603

Query: 402  VIVT-SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI---- 456
            V    S           ++   ++ +       +     I H    +    P+ R+    
Sbjct: 604  VRNKDSGDIEKWFGTCTDVHESIETKFDAKRTRQQLLSVIAHSQVTIFTVDPNRRVNMLE 663

Query: 457  --KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
               + N  +  +       +    H   +         E +  D F   I      R + 
Sbjct: 664  GALIWNHTYEDVHDPSRWYIGENMH--TVFNRLVDQPPEGEQLD-FLQPIEDILQGRTTE 720

Query: 515  QGTLELLSDSVLEYSIIPLPNAQTML---------------TFVNVTDSVRAERALTEKN 559
                  L D       +P+   +T                          R E  L +  
Sbjct: 721  DVKEHGLDDRWYRTRFLPMYGKKTHDGKTTSDSTIEGVIGVIMDVTELRDREEALLKQSR 780

Query: 560  E---------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E         A ++A+ +K+ F+ ++S+E+R+P+T ++G  +LL       L+ +Q  Y+
Sbjct: 781  EKRKAVANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLSHM---DLDEEQRDYL 837

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I +S+T LL ++NDILD + V++G + +      L+ ++ EV + +   +   N+  +
Sbjct: 838  DNIQSSATSLLTVINDILDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQ 897

Query: 671  VISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSV 723
                  +      + D  R+ QI + +L+N++ F+++G    S        D+ +  F V
Sbjct: 898  SDIGSDIENDMVVIGDPGRVRQIITNLLTNSIKFTNQGYVRFSVTTESETSDSINIKFVV 957

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++ G  I ED+ K +F  F        RR  G GLGL+I ++ ++L  G + + S+ +  
Sbjct: 958  EDTGIGIQEDVRKRLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSG 1017

Query: 782  TTINCRIP 789
            T  +  IP
Sbjct: 1018 TKASFWIP 1025


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 153/375 (40%), Gaps = 17/375 (4%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                ++             +D   + +       RI L N     ++       + G  +
Sbjct: 808  EHKRIQEALQISQARFAGILDIAEDAIISLDRHQRITLFNQGAEKIFGYSAEE-AIGQPL 866

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +        ++    D   + I S    ER+ + G  +  ++   E SI  L   + +
Sbjct: 867  DVLLPLRFVQVHQQYVNDFGQSPIRSRRMGERREISGRRKDGTEFPAEASISKLNLDKEV 926

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               V + D               ++ + +K+ F+  VS+ELR+PLT+I G   +L +  L
Sbjct: 927  AFTVFLQDIT-----------DRKQIERMKDEFISIVSHELRTPLTSIHGSLGMLASGLL 975

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             + + +  + +     S+  L+ L+NDILD+  +++G +K+      + DL+ E    + 
Sbjct: 976  KADSEEGKRMLYIAVDSTDRLVRLINDILDIERIESGRVKMEKQCCNVEDLITEAVNVVQ 1035

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                 N + + +       S  AD  R++Q    +LSNA+ FS  G  V L   + +   
Sbjct: 1036 ALA--NKVEVTLSVSSLSISLWADPDRIVQTLINLLSNAIKFSHTGKIVWLTVQQQDRHL 1093

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            +F VK+ G  IP +  +S+F RF            G GLGL+I  S +  H GH+ + S 
Sbjct: 1094 LFIVKDEGRGIPTEKLESIFERFQQVDSSDSRNHEGTGLGLAICRSIVQQHDGHIWVESV 1153

Query: 778  DEGVTTINCRIPSKE 792
                +     IP ++
Sbjct: 1154 LGEGSIFYFMIPIRD 1168



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 75/232 (32%), Gaps = 22/232 (9%)

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
            I+W+N S     E++G  F    GE  ++    ++       A E    E  +      
Sbjct: 732 RIVWSNGS-IHWIESKGKFFYNETGEPVRILG-TVRDITACKQAEEALQNEKNNLERRVT 789

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQ 329
            ++ ++  V N      +  ++ +   + + L         IL     AI   D+++ + 
Sbjct: 790 ERTTELQEVNN-----CMQSELEEHKRIQEALQISQARFAGILDIAEDAIISLDRHQRIT 844

Query: 330 FHNRSFVELWEIDLAFLATNPSNDEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
             N+   +++          P +  L L F++   +          +       +  E  
Sbjct: 845 LFNQGAEKIFGYSAEEAIGQPLDVLLPLRFVQVHQQYVNDFGQSPIRSR-----RMGERR 899

Query: 389 KDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKV 435
           + +    +G       + +              +++T +  +E   +  + +
Sbjct: 900 EISGRRKDGTEFPAEASISKLNLDKEVAFTVFLQDITDRKQIERMKDEFISI 951


>gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1027

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 15/309 (4%)

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            +       AA+     DE   L    E   D +++ +   L    T      +      
Sbjct: 575 RDRKVIAELAALYQVDPDELWKLSMEYEHRPDFIIDTAKQRLKT--TARLIGEMVSRSMV 632

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +       A+  K+ F+ ++S+E+R+PL  ++G   LL+T+       +Q +Y+ 
Sbjct: 633 EQDLQKATHLAETANRAKSEFLANMSHEIRTPLNGVLGMLQLLETT---DQTDEQKEYLF 689

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              +S+  L  L++DILD++ ++AG M++      +    + +K+    +     +R++ 
Sbjct: 690 GAISSTKRLTRLLSDILDISRIEAGRMEIVEVEFNIKKTRDSIKELFNPEAKGKGLRLEF 749

Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVK 724
             D  L    V D  RL QI   ++ NA+ F+ KG  + + A      +  +   + +V+
Sbjct: 750 GRDEDLPLVLVGDEARLRQILFNLVGNAIKFTEKGE-IRIDASLLPSSSDSHVRVLVTVR 808

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IPE+  K +F  FV       RR  G GLGLSIV   + L GG +SI S+    T
Sbjct: 809 DTGIGIPEEHLKGIFEPFVQAEASYTRRFQGAGLGLSIVRRLVKLMGGDISIDSTVGEGT 868

Query: 783 TINCRIPSK 791
           T+   +P K
Sbjct: 869 TVYLSLPFK 877



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 86/273 (31%), Gaps = 17/273 (6%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND---------ELLEFLRS 361
            L N    +   D +  + F N  + +L   +   L      D         E+     S
Sbjct: 40  TLINAPQIVISLDPSGKIIFANNHYFDLTGWNREELLGRNWFDTCIPEVVRDEIRGIFNS 99

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           +       ++ T++ +I    ++ E     W   N  TL              M  ++T 
Sbjct: 100 SMTRMHDHDYSTYENDILR--RNGECLTVAWF--NVLTLDSQGLPLD---VTCMGVDVTE 152

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   E       +      ++          +GR    N  +      E+     G    
Sbjct: 153 RRRSEIALKESEQRFRNLFENAPLAYQSLDENGRFLDVNRKWLESLGYEDKVQVLGKWFG 212

Query: 482 N-IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           + +A     +++ +      A +I   + E   + G    +S +    +       +T  
Sbjct: 213 DFLAPDYKDHFDINFPMFKQACVIDGVEFEMLRMDGGRITVSFNGRVQADREGNFIRTHC 272

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            F ++T+  RAE  L    E LR A++  N  +
Sbjct: 273 IFTDITERRRAEDKLHVTAERLRLANKATNDVI 305



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 63/428 (14%), Positives = 143/428 (33%), Gaps = 48/428 (11%)

Query: 178 LAETTLKCKKLSNHISVFKVL-------FDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           LAE      ++S    V   +         +   +V   D +G I++AN  Y   T   G
Sbjct: 13  LAELDAARARISQLEHVVGSVENKWNNTLINAPQIVISLDPSGKIIFANNHYFDLT---G 69

Query: 231 IVFQKAIGES------RKLFKEEIK----KRMISSSALEKNFCETVSTLEHGNNK---SY 277
              ++ +G +       ++ ++EI+      M      + +  E      +G       +
Sbjct: 70  WNREELLGRNWFDTCIPEVVRDEIRGIFNSSMTRMHDHDYSTYENDILRRNGECLTVAWF 129

Query: 278 KIVRVLNSFG---EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
            ++ + +         + +DV++    EI + +       +  N  +A    D+N     
Sbjct: 130 NVLTLDSQGLPLDVTCMGVDVTERRRSEIALKESEQRFRNLFENAPLAYQSLDENGRFLD 189

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            NR ++E    +              +FL    K    +N+  +K+    V    E   +
Sbjct: 190 VNRKWLESLGYED---KVQVLGKWFGDFLAPDYKDHFDINFPMFKQ--ACVIDGVEF--E 242

Query: 391 TWHLPNGQ---TLHVIVTSNPRGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              +  G+   + +  V ++  G  I    +F ++T +   E K +   +         +
Sbjct: 243 MLRMDGGRITVSFNGRVQADREGNFIRTHCIFTDITERRRAEDKLHVTAERLRLANKATN 302

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEE---NRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           + +  +      +  N A  +++   E     +S    +  +        N+S    +  
Sbjct: 303 DVIWDWDVTQDTQQWNEAGTAVFGWTEIVARPVSAHWWVDRVHPDDRERVNDSFFSVVNN 362

Query: 502 AIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             I  + DE + +   GT   + D             + +    ++T+  +AE +L    
Sbjct: 363 PEIDVWHDEYRFMKADGTYADVIDRGYLLRDGQGKPIRMIGAMQDITERKQAEASLNSIK 422

Query: 560 EALRKADE 567
             + K   
Sbjct: 423 WLVDKEVR 430



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 97/328 (29%), Gaps = 48/328 (14%)

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
           + LR+ G+   L     N   +  +G           L +  +  ++ E       L   
Sbjct: 115 DILRRNGE--CLTVAWFNVLTLDSQGLP---------LDVTCMGVDVTERRRSEIALKES 163

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANI------SYKKNTETEGIVFQKAIGESRKLFK 245
              F+ LF++        D+ G  L  N        Y+   +  G  F   +    K   
Sbjct: 164 EQRFRNLFENAPLAYQSLDENGRFLDVNRKWLESLGYEDKVQVLGKWFGDFLAPDYKDHF 223

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA----GIAIDVSKEITV 301
           +        +  ++    E +         S+      +  G       I  D+++    
Sbjct: 224 DINFPMFKQACVIDGVEFEMLRMDGGRITVSFNGRVQADREGNFIRTHCIFTDITERRRA 283

Query: 302 NDQLTHTYEILH--NLTVAIAIFDQN--RYLQFHNRSFVELWEIDLAFLATNP------- 350
            D+L  T E L   N      I+D +  +  Q  N +   ++      +   P       
Sbjct: 284 EDKLHVTAERLRLANKATNDVIWDWDVTQDTQQWNEAGTAVFGWTE--IVARPVSAHWWV 341

Query: 351 ------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                   + + +   S    PE   W      + +    ++     + L +GQ   +  
Sbjct: 342 DRVHPDDRERVNDSFFSVVNNPEIDVWHDEYRFMKADGTYADVIDRGYLLRDGQGKPIR- 400

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTL 432
                   I   +++T +   E   N++
Sbjct: 401 -------MIGAMQDITERKQAEASLNSI 421


>gi|254422420|ref|ZP_05036138.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196189909|gb|EDX84873.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1023

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 155/407 (38%), Gaps = 45/407 (11%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L  +   E +           +++    V +    G     N    + +K + + L    
Sbjct: 177 LLQRRQSEERLRDSEARFRAFMNNTDAMVFMKDSQGCFTYVNRPLEAEFKLQPDELVGKD 236

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
                +   ++   E+D   L      S  +   +  G          + +  P  +   
Sbjct: 237 DFYLSSEEVAKQVRENDARVLSNNQSQSLVEVVPTPDGI-----SRYWKVNKFPFTDHSG 291

Query: 537 --QTMLTFVNVTDSVRAERALTEKNEALRKADE--------------IKNSFVQHVSYEL 580
                 T  ++T   + E+ LT +    ++ +E               K+SF+  +S+E+
Sbjct: 292 QKHVGGTAFDITQQKQLEKRLTLEKLEQQRINESLAIAIKAAEAASQAKSSFLAMMSHEI 351

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  ++G  +LL  ++   L+ +Q  ++  I      LL ++NDILD + +++  ++L
Sbjct: 352 RTPMNAMLGMAELLDGTE---LSPQQQDFINIIRTGGNTLLTVINDILDFSKIESNNLEL 408

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIK-----VISDGKLGSFVADRQRLLQIFSKIL 695
             S   L + + +V    + +  E  + +      +  D     F  D  RL QI S ++
Sbjct: 409 EISRFDLYECIEQVLTLFSNQAEEKQLSLTSIVEPIELDRIPTYFKGDVTRLQQILSNLV 468

Query: 696 SNAMDFSSKGST---VILKAARDNG---------DFIFSVKNNGSSIPEDMCKSVFNRFV 743
           SN++ F+ +G     V + A              +  F V + G  I E+    +F  F 
Sbjct: 469 SNSIKFTQEGEVSLQVKVGAVASEERAEEPSSNYELQFLVTDTGIGIAEEKIPYLFQPFS 528

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                   +  G GLGL+I +  + L GG + + S     +T +  I
Sbjct: 529 QVDASMTRRYGGTGLGLAISKQLVELMGGEMGMVSKVGSGSTFHFCI 575



 Score = 44.2 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 56/145 (38%), Gaps = 10/145 (6%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQK 235
           L +     ++L +  + F+   ++ D +V+ +D  G   + N   +     + + +V + 
Sbjct: 177 LLQRRQSEERLRDSEARFRAFMNNTDAMVFMKDSQGCFTYVNRPLEAEFKLQPDELVGKD 236

Query: 236 AIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKS----YKIVRVLNSFGEA 289
               S +   +++++      S+   ++  E V T +  +       +            
Sbjct: 237 DFYLSSEEVAKQVRENDARVLSNNQSQSLVEVVPTPDGISRYWKVNKFPFTDHSGQKHVG 296

Query: 290 GIAIDVSKEITVNDQLTHTYEILHN 314
           G A D++++  +  +L  T E L  
Sbjct: 297 GTAFDITQQKQLEKRL--TLEKLEQ 319



 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 26/155 (16%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  + D        ++N    + + D      + NR     +++    L           
Sbjct: 184 EERLRDSEARFRAFMNNTDAMVFMKDSQGCFTYVNRPLEAEFKLQPDELVGKDDFY---- 239

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIVTSNP------- 408
                  L  +   K  +EN   V  ++++    +    P+G + +  V   P       
Sbjct: 240 -------LSSEEVAKQVRENDARVLSNNQSQSLVEVVPTPDGISRYWKVNKFPFTDHSGQ 292

Query: 409 --RGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
              GGT +   ++T Q  LE +  TL K++ + I+
Sbjct: 293 KHVGGTAF---DITQQKQLEKRL-TLEKLEQQRIN 323


>gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
 gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
          Length = 2607

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 156/804 (19%), Positives = 284/804 (35%), Gaps = 129/804 (16%)

Query: 94   EIIGQLHQRIDIPQT-DTDLLSFENWLKFHHYIKLSKAT------------EKLRKEGQS 140
            E +G L     +PQ  +   ++F + L       L  A             + LR   QS
Sbjct: 1818 ERLGVLWVASRMPQEWNKRQIAFISILANQAGQALKSAQLYQLEQQRRRLADTLRDVAQS 1877

Query: 141  FDLVAETQNDCAIKIE-----GRVSGSCAFLRILSLDGIYSELAE----TTLKCKK-LSN 190
            F           + I+      R   +  FLR    + +    A       L+      +
Sbjct: 1878 FTSTLALPEIQTLIIDQLQRVVRYDSAVVFLRDPETNRLQMTEARGIGDVPLREAHFAID 1937

Query: 191  HISVFKVLF---------DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             I++F  +          D+L+   +      ++ W   S+              +    
Sbjct: 1938 EIALFHDMAIERQPLMCADTLNDPRFAM--MHELGWHARSWIGAPLLVDNELVGLLTIGA 1995

Query: 242  KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI---------VRVLNSFGEAGIA 292
             +      + +  + AL     + +      N + +           VRVL    +   A
Sbjct: 1996 DVPDSYDAEAVEGTFALASQASQAIR-----NARLFDQISKLAADLEVRVLERTADLARA 2050

Query: 293  ID-VSKEIT---------------------VNDQLTHTYEILHNLTVAIAIFDQNR---- 326
             D +S+E                       +   L    E L  +  +I + D       
Sbjct: 2051 TDQLSEEKERLEAVHAITLELTTQLDLDSIIQRALELISENLGVVRGSIMLRDTENGSLL 2110

Query: 327  -YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS----- 380
                 +NR       I L+F  +      ++      N      + +  KE   +     
Sbjct: 2111 CRAVLYNRGDARAANIPLSFQGSEGLAGWVMRTQEPVNVSDVNEDERWVKEAGRADDVRS 2170

Query: 381  ----------------VYKSSETHKDTWHLPN--GQTLHVIVTSNPRGGTIWMFENLTVQ 422
                            V  S   H  T    N  G    VI ++            L  +
Sbjct: 2171 VAAVPIKTNDAALGVLVLSSPVEHYFTDSQMNLLGTIASVIASAVSNAQLYNFITELATR 2230

Query: 423  VD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
               L  +              ++EGV V  P G++ L NPA   + +    RL     +R
Sbjct: 2231 NSILLEEQREESSKSAAVFRSVTEGVIVLDPQGQVTLFNPAAEQVLEIPAERL-----LR 2285

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--------DSVLEYSIIPL 533
                    Y  + D       + T      K +Q T ++ S        + V+  +I P+
Sbjct: 2286 QPLNRLHDYGEDDDQRKRAQTLYTGLMTGLKQVQETDKIYSSSLDLTNPNQVIALNIAPV 2345

Query: 534  --PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              P+ Q     + + D  R   A           DE K  F+  VS+ELR+PLT I G+ 
Sbjct: 2346 IGPDGQGYGKVIVLRDITREIEA-----------DEAKRQFISDVSHELRTPLTAIKGYV 2394

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            D+L  S   +L S Q  Y+  I  ++  L  L+ DIL+ +  DA   KLN++ + + +++
Sbjct: 2395 DVLLLSGTQTLTSDQVSYLGIIKNNTNRLKALIEDILEFSRPDASK-KLNFTRLSIPEVI 2453

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +EV  S+  +    ++ ++V +   L + +AD++R+ Q+   + SNA+ ++ +G  + ++
Sbjct: 2454 DEVVSSLRLEYQRKDMSVEVDAPHDLPTVMADQKRITQVVFNLFSNAVKYTFEGGHIHVR 2513

Query: 712  AARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
            A  +    F   V++ G  +  +  K +F  F    +  R    G GLGLSI ++ I  H
Sbjct: 2514 AFLNRANMFQVDVEDTGVGMSPEQRKKLFRPFYRADNPLRDVAGGTGLGLSIAKALIEQH 2573

Query: 769  GGHVSISSSDEGVTTINCRIPSKE 792
            GG + ++S     +T +  +P ++
Sbjct: 2574 GGEMWVTSEIGKGSTFSFILPLQQ 2597


>gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
           6803]
 gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
           6803]
          Length = 1209

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 124/722 (17%), Positives = 248/722 (34%), Gaps = 133/722 (18%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV-FQKAIGE 239
              K ++L + ++   +   ++D  +   D  G I W N ++        I+   K + E
Sbjct: 7   LITKIEELQSTLAKMDIALGTVDEAIVWTDGTGQIQWCNTAFDHLMGKLHILILGKNLVE 66

Query: 240 SRKLFKEEIKKRMISSS-----ALEKNFCETVSTLEHGNNKSYKIVRVL--NSFGEAGIA 292
              L +      +         A ++ F +     ++G     +I+     N+ G   + 
Sbjct: 67  LLPLHRNSQPLEVSHHPFTIIVATQQKFTDHYEFNQNGKWLHLEIMTSPLMNAQGAVLVI 126

Query: 293 IDVSKEITVNDQLTHTYE------------------------------------------ 310
            D+S        L    E                                          
Sbjct: 127 RDISDRHLQEQTLQQLNENLEKRVLERTQAVSLINNKLEQELRERKKTEIALKATTSRLE 186

Query: 311 -ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
            ++ NL   + + ++N  +   N+ F +L+ ID+          +  +  + A  L E  
Sbjct: 187 ALIQNLQAGVLVENENGKIVLVNQVFCDLFGIDVP--PEKLIGFDCRQSAQFAKILFE-- 242

Query: 370 NWKTWKENIFSVYKSSETH-KDTWHLPNGQTLHVIVTSNPRG----GTIWMFEN------ 418
           + + +   I ++ ++ +    +   L +G+T          G    G +W++ N      
Sbjct: 243 DPEAFIIGIDNILQNRQIVTNEELRLKDGRTFARDYVPIEVGNHHDGRLWLYRNITPQKQ 302

Query: 419 -----------------LTVQVDLE----TKYNTLVKVQGETIDHLSEGVAVFGP----- 452
                            +T ++         +   V   G+T+      V ++       
Sbjct: 303 AEVSLRKQYQRTLLLKEITEEIRQSLDPVKIFQVAVSRLGQTLQVSRCIVHLYSDMPQPH 362

Query: 453 ----------------DGRIKLS-NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                           D  + ++ NP        ++        +   A     +YN+  
Sbjct: 363 LTCVAEYLIPGMTSMLDLNLLIADNPHLLRALNQDDAVQVDNLKMVPTAVPLQDFYNQLQ 422

Query: 496 GWDLFAA------------IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            + L               I+   D  R      +EL+     +  I             
Sbjct: 423 VYSLLIIRTSYQDKTNGLLILHQCDRSRSWNTEEVELVKAVADQVGIALAQAKLLEQERE 482

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +   +AL    +A   A+  K+ F+  +S+E+R+P+  +IG T LL  +    LN
Sbjct: 483 IRQQLIEQNKALMTATKAAEDANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTH---LN 539

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q Q+ E I +S   LL+L+NDILD + +++G  KL      +   + E    +A +  
Sbjct: 540 TQQQQFTETIRSSGEALLSLINDILDFSKIESGQFKLEIHPFEIQQCVEECLDLVAPQAF 599

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718
              + +    + ++    + D  R+ Q+   IL+NA+ F++ GS  V + A   N     
Sbjct: 600 AKKLDLVYQIEPQVPMAILGDLTRVRQVLVNILANAVKFTTSGSIQVRVSATVANQQQNK 659

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
               FS+K+ G  I  D   ++F  F         +  G GLGL+I +    + GG + +
Sbjct: 660 YTIQFSIKDTGIGISPDQQSALFKSFSQVNTSIARKYGGTGLGLAICKRLTEMMGGQIWV 719

Query: 775 SS 776
            S
Sbjct: 720 ES 721


>gi|161506706|ref|YP_001576656.1| putative histidine kinase [Lactobacillus helveticus DPC 4571]
 gi|160347695|gb|ABX26369.1| putative histidine kinase [Lactobacillus helveticus DPC 4571]
          Length = 618

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 171/421 (40%), Gaps = 38/421 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKY-NTLVKVQGETID 441
            E  K   H+ NG  +  V + SN   G +   F  L+V+++   +  ++  +     + 
Sbjct: 211 EEMQKQALHIANGDYSSQVKIYSNDELGQLAKAFNTLSVRIEQSQEESDSERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    S    +E+ +     I  +         ++   DL +
Sbjct: 271 HMSDGVLATDRHGNVSVVNHMALSYLNADEDEIIN-RPIAEVLG-----LKDTSSQDLIS 324

Query: 502 AIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +        +K +  T++     + +L  S   +      ++          E+      
Sbjct: 325 S--------QKEIVVTVKPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTEQQ----- 371

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K +  +  FV +VS+ELR+PLT++  + + L             +++E     ++ 
Sbjct: 372 ----KNENSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKD-PEIAPKFLEVTQQETSR 426

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-------KMHENNIRIKVI 672
           ++ ++ND+L L+ +D G+ K++   +  ND ++ +             K H+    IK  
Sbjct: 427 MIRMINDLLSLSRMDRGVSKMDLEFVNFNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRE 486

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D  +++Q+   I++NA+ +S  G  + ++     G  I S+ + G  IP 
Sbjct: 487 LGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPR 546

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F+RF          + G GLGL+I +  +  H G V   SS+   +T    +P 
Sbjct: 547 KDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRVWADSSEGKGSTFYISLPY 606

Query: 791 K 791
           +
Sbjct: 607 E 607


>gi|298530374|ref|ZP_07017776.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509748|gb|EFI33652.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 862

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 163/383 (42%), Gaps = 25/383 (6%)

Query: 427 TKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +Y      +   +D  S   +      G I L NP   +L     + ++   +I ++  
Sbjct: 45  RRYREANAQRRAVLDAASRMSIIATDLSGNITLFNPGAENLLGYASSDVAGRMNILSLHT 104

Query: 486 TCSRYYNESDGWDLFA-----AIITSFDDERKSLQGTLELL-SDSVL---EYSIIPLPNA 536
           T     + +             I   +   ++   G  + + SD  L     SI  + NA
Sbjct: 105 TEDLERHRASLKATLTSSTGMEIFEHYTSLQQHDTGEWQYICSDGTLLPVSLSITSIYNA 164

Query: 537 QTM-----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           + M      T +++T     E+ L    E   +A   +  F+  +S+E+R+P+  I G  
Sbjct: 165 EGMREGYLFTAMDLTLRKSLEQKLVAAKEEAEQASACRGEFLARMSHEIRTPMNAITGMA 224

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL +++   LN  Q  YV  I  S+  LL ++NDILD + +DAG M+L      L  ++
Sbjct: 225 YLLGSTE---LNHVQQDYVRKIIDSADTLLAIINDILDFSKIDAGRMELEELPFSLQQII 281

Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---T 707
             +   +  +  E  ++I+  I  G   S V D  RL QI   + SNA+ F+S+G    T
Sbjct: 282 GRMLNVVGARAEEKGLKIQTHIHPGVPDSLVGDALRLGQIILNLCSNAVKFTSQGEVALT 341

Query: 708 VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
           V L+  R +  D +F V + G+ I  +  + +F  F         +  G GLGL+I +  
Sbjct: 342 VTLQKERQHQVDLLFCVSDTGTGITPEKAEQLFQAFQQADGSITRKYGGSGLGLAICKEL 401

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
             + GG + + S  +  ++    
Sbjct: 402 TQMMGGEIWVESIPDQGSSFFFT 424


>gi|239828687|ref|YP_002951311.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808980|gb|ACS26045.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 608

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 158/385 (41%), Gaps = 26/385 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + H+++GV      GRI L N A  ++  
Sbjct: 237 GQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRIILINDAALNILN 296

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +   + I ++     +Y  E+   +  + I+    DE              +L  
Sbjct: 297 VSRETVLS-SSIIDVLGIGDQYTFETLLEERDSLILDFSTDE-----------GLYILRA 344

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+  +     ++  + V      E+          K D  +  FV +VS+ELR+PLT + 
Sbjct: 345 SLSVIQKESGLINGLIVVLHDITEQE---------KIDRERREFVANVSHELRTPLTTMK 395

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L         +   +++E +   +  ++ LVND+L L+ +D+   KLN S +  +
Sbjct: 396 SYLEALAEGAWQD-KAIAPRFIEVVQTETERMIRLVNDLLQLSKLDSKDYKLNKSWVNFS 454

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +  ++V         E NI        +      D+ ++ Q+   I+SNA+ +S +G  +
Sbjct: 455 EYFHKVIDRFELTKSE-NITFVRKIPKEAIFIEIDKDKITQVLDNIISNAIKYSPQGGKI 513

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             +      + I SV + G  IP+     VF RF        R   G GLGL+I +  + 
Sbjct: 514 TFRVRELADEIIVSVSDEGVGIPKGDLAKVFERFYRVDKARSRKLGGTGLGLAIAKEVVI 573

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG +   S +   TTI   +P +
Sbjct: 574 AHGGTIWAESKEHKGTTIFFTLPLE 598



 Score = 45.7 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 56/162 (34%), Gaps = 20/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N + + +  +    + ++   D L
Sbjct: 252 EAQATTEGERRKLESVLTHMTDGVIATDRRGRIILINDAALNILNVSRETVLSSSIIDVL 311

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                    + +Q  ++T  E   S+     +  +  ++       +   S    G I +
Sbjct: 312 G--------IGDQYTFETLLEERDSLI-LDFSTDEGLYILRASLSVIQKESGLINGLIVV 362

Query: 416 FENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEG 446
             ++T Q  +D E +           T +      ++ L+EG
Sbjct: 363 LHDITEQEKIDRERREFVANVSHELRTPLTTMKSYLEALAEG 404


>gi|119486508|ref|ZP_01620566.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119456410|gb|EAW37541.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1837

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 144/799 (18%), Positives = 286/799 (35%), Gaps = 87/799 (10%)

Query: 58   TYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFEN 117
                   +     +Y SL++  +   IVW    E   I  Q    I   Q+ ++  ++  
Sbjct: 911  LKQTEEALRQSEQRYRSLVSILSS--IVWTVNPEGHFIQPQPAWEIYTGQSWSEYQNWG- 967

Query: 118  WLK---FHHYIKLSKATEKLRKE-----GQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL 169
            W++        ++     + R        +     A TQN    + +G      +   + 
Sbjct: 968  WIEAIHPEDQARVQSIWIQARDNKTIYQSEGRIWNAATQNYRYFEAKGIPL-LNSEGSVQ 1026

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTET 228
               G  +++         L      F+ + ++++ + W  D +   IL+ + +Y+     
Sbjct: 1027 EWVGTITDVDNRKRAEIALGQSEERFRQMAENVEDVFWIMDVKDVQILYVSPAYEHIWGH 1086

Query: 229  -------EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK--I 279
                       + +AI    +   + ++         ++   E       G+ +  +   
Sbjct: 1087 SCDRLYTNPYNWLEAIHPEDQ---QRVRIAFFEQGFQDQFSQEYRIIRPDGSMRWIRDRS 1143

Query: 280  VRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
              + N  GE    AGIA D++    V   L  + +           F   + L  +  +F
Sbjct: 1144 FPIPNEQGEVRRIAGIAEDITTSKQVAAALRRSEQ----------QFRVAQELSLY--AF 1191

Query: 336  VELWE--------IDLAFLATNPSNDELLEFLRS---ANKLPEQLNWKTWKENIFSVY-- 382
              L          ID  F+  NP   E ++         +L E L       N+F+ Y  
Sbjct: 1192 TILKSVRDETGQIIDFEFIYINPKAAEAVKRSAEDIIGQRLLEVLPGSQLNTNLFNRYIQ 1251

Query: 383  --KSSETHK-DTWHLPNGQTLHVI-VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
              ++ + H  +  +  +G T     +      G    F +++ +   E            
Sbjct: 1252 VVETGQPHDIEILYDADGITGWFHNMAVKLEDGVAVSFSDISDRKQAEEALRDSEAAAKA 1311

Query: 439  -------TIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                    ++ +   + +    +     +N +   L +T    ++  T          + 
Sbjct: 1312 RAEELEILMEAVPAAIWIAHDRNCHQMTANLSAYELMRTSPGSITTATSPDGKNYLPFKQ 1371

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSD----SVLEYSIIPLPNA-----QTMLT 541
                         +       + ++G LE + D      +    +PL N        +  
Sbjct: 1372 QRNGKEIPPHDLPMQRAGRTGEEVEGELEFVFDSGEVRYIYGKAVPLRNELGKVRGVIGA 1431

Query: 542  FVNVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            F++VT+  +AE    +         E    A+ IK+ F+  +S+ELRSPL  I+G+ +LL
Sbjct: 1432 FLDVTERKQAEAEREQLLARERSAREEAEAANRIKDEFLAVLSHELRSPLNPILGWANLL 1491

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            +  K+   +    Q +  I  +  + + L++D+LD++ +  G +KLN S++ L  ++   
Sbjct: 1492 QRQKVD--DQVFHQALTTIERNVKLQVQLIDDLLDVSRILRGKLKLNRSSVDLVVVILSA 1549

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +++       +I I+   D ++G  + D  RL QI   +LSN + FS  G  V +    
Sbjct: 1550 IETVRLAAEAKSIEIRTHLDTQVGKVLGDAGRLQQIVWNLLSNGVKFSETGGQVDIYLES 1609

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
               +    V++ G  I       VF+ F        R   G+GLGL+IV     +HGG V
Sbjct: 1610 VGNEAQIRVQDRGKGINPKFLPYVFDYFRQEDGTTTRKFGGLGLGLAIVHYITEMHGGTV 1669

Query: 773  SISSSD-EGVTTINCRIPS 790
               S       T   ++P 
Sbjct: 1670 QAESPGVGKGATFTVKLPL 1688



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 87/569 (15%), Positives = 172/569 (30%), Gaps = 78/569 (13%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD--------GKDETPEII 96
            I +R     +  +    L ++  + S+ +++L +     ++ D           +  +I+
Sbjct: 521  IHERKQAEAEREQL---LQQLETERSRMNAILQQMPAGVLIADEATQKLVLANQQVEQIL 577

Query: 97   G---QLHQRIDIPQTDTDLLSFENWLKFHHYIK-------------LSKATEKLRKEGQS 140
            G    L   +D          F    + +   +             L +    LR +G S
Sbjct: 578  GYSYPLDLELDAYAQTITFTGFHPNGQPYQASEYPLLRSLKTGEVILGEEISILRADGDS 637

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
              +   +        +G +  + A      +       AE +L+  +       F+ L +
Sbjct: 638  IFINVNSAPIR--DQQGEIVAAVAV--FRDITAQRQ--AELSLRRGE-----ERFRALIE 686

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALE 259
                 V   +  G  +  N       +  G   ++ IG+   +L   E + R+ +     
Sbjct: 687  QAPDAVLIAEIDGTYIDVNN---NACDLLGYRREELIGKQISELIPSEDQPRLAAMKQSL 743

Query: 260  KNFCETVS----TLEHGNNKSYKIVRVLNSFG-EAGIAIDVSKEITVNDQLTHTYEILHN 314
                  V       + G +   +I   +   G       D+++       L    E L  
Sbjct: 744  LLGNTHVEEWKLIRKDGTDVPVEISTKILPDGRWQAFVRDITERKQAEAALRQREEELRL 803

Query: 315  LTVAI----AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            +T A+    A  D+ +  +F NR++ + +      +        L EF+           
Sbjct: 804  ITDAVPALIAYVDREQRFRFVNRAYRDWFGYPPEKIIGQH----LAEFIGET-------A 852

Query: 371  WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQV 423
            ++  K N+ S         + W    G   +V     P         G   +  ++T   
Sbjct: 853  YQYMKLNVESALAGKPVTVELWMPFEGGPRYVRRQYIPDIANNGTVKGFYALITDITNLK 912

Query: 424  DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
              E       +     +  LS  V    P+G      PA+        +       I  I
Sbjct: 913  QTEEALRQSEQRYRSLVSILSSIVWTVNPEGHFIQPQPAWEIYTGQSWSEYQNWGWIEAI 972

Query: 484  AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QT 538
                         W       T +  E +      +  +    E   IPL N+     + 
Sbjct: 973  HPEDQARV--QSIWIQARDNKTIYQSEGRIWNAATQ--NYRYFEAKGIPLLNSEGSVQEW 1028

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADE 567
            + T  +V +  RAE AL +  E  R+  E
Sbjct: 1029 VGTITDVDNRKRAEIALGQSEERFRQMAE 1057



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/443 (14%), Positives = 146/443 (32%), Gaps = 52/443 (11%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++         L +  ++++ L D++   +W  D  G   + N  +    E  G+  ++
Sbjct: 393 RDITNLKEAENALRSSETLYRTLSDAVPDFIWSCDSNGQTDFVNSRW---IEYTGLTLEE 449

Query: 236 AIGESRKLFKEEIK----KRMISSSALEKNFCET--VSTLEHGNNKSY--KIVRVLNSFG 287
              +  +           ++    +  +  F E         G  + +  +   + +  G
Sbjct: 450 LNSKGLQQINHPDDYPHLQQAWEEAKQQGGFFEAEFRYRRHDGVYRWFIGRAAPLKDEVG 509

Query: 288 ----EAGIAIDVSKE---ITVNDQLTHTYEI--------LHNLTVAIAIFD-QNRYLQFH 331
                 G   D+ +        +QL    E         L  +   + I D   + L   
Sbjct: 510 RVIKWIGTTTDIHERKQAEAEREQLLQQLETERSRMNAILQQMPAGVLIADEATQKLVLA 569

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N+   ++         + P + EL  + ++        N + ++ + + + +S +T +  
Sbjct: 570 NQQVEQILGY------SYPLDLELDAYAQTITFTGFHPNGQPYQASEYPLLRSLKTGEVI 623

Query: 392 W------HLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
                     +G ++ + V S P           + +F ++T Q   E       +    
Sbjct: 624 LGEEISILRADGDSIFINVNSAPIRDQQGEIVAAVAVFRDITAQRQAELSLRRGEERFRA 683

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I+   + V +   DG     N     L       L  G  I  +  +  +    +    
Sbjct: 684 LIEQAPDAVLIAEIDGTYIDVNNNACDLLGYRREEL-IGKQISELIPSEDQPRLAAMKQS 742

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L        +   +  +   +  +D  +E S   LP+ +      ++T+  +AE AL ++
Sbjct: 743 LLLG-----NTHVEEWKLIRKDGTDVPVEISTKILPDGRWQAFVRDITERKQAEAALRQR 797

Query: 559 NEALRKADEIKNSFVQHVSYELR 581
            E LR   +   + + +V  E R
Sbjct: 798 EEELRLITDAVPALIAYVDREQR 820



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 77/501 (15%), Positives = 155/501 (30%), Gaps = 59/501 (11%)

Query: 120 KFHHYIKLSKATEKLRKEGQSFD--LVAETQNDCAIKIEGRVSG-----SCAFLRI---L 169
               Y  L +A E+ +++G  F+        +       GR +            I    
Sbjct: 460 HPDDYPHLQQAWEEAKQQGGFFEAEFRYRRHDGVYRWFIGRAAPLKDEVGRVIKWIGTTT 519

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANI------SY 222
            +       AE     ++L    S    +   +   V   D+A   ++ AN        Y
Sbjct: 520 DIHERKQAEAEREQLLQQLETERSRMNAILQQMPAGVLIADEATQKLVLANQQVEQILGY 579

Query: 223 KKNTETEGIVFQKAI-----GESRKLFKEEIKKRMISSSALEKNFCETVSTL-EHGNNKS 276
               + E   + + I       + + ++      + S    E    E +S L   G++  
Sbjct: 580 SYPLDLELDAYAQTITFTGFHPNGQPYQASEYPLLRSLKTGEVILGEEISILRADGDSIF 639

Query: 277 YKI----VRVLNSFGEAGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
             +    +R       A +A+  D++ +      L    E    ++     A+ I + + 
Sbjct: 640 INVNSAPIRDQQGEIVAAVAVFRDITAQRQAELSLRRGEERFRALIEQAPDAVLIAEIDG 699

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
                N +  +L       L             + +  +P +   +     +        
Sbjct: 700 TYIDVNNNACDLLGYRREELIGK----------QISELIPSEDQPRL--AAMKQSLLLGN 747

Query: 387 THKDTWHL--PNGQTLHVIVTS--NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           TH + W L   +G  + V +++   P G       ++T +   E       +      D 
Sbjct: 748 THVEEWKLIRKDGTDVPVEISTKILPDGRWQAFVRDITERKQAEAALRQREEELRLITDA 807

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +   +A    + R +  N A+R  +     ++        I  T  +Y   +    L   
Sbjct: 808 VPALIAYVDREQRFRFVNRAYRDWFGYPPEKIIGQHLAEFIGETAYQYMKLNVESALAGK 867

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV----NVTDSVRAERALTEK 558
            +T        L    E     V    I  + N  T+  F     ++T+  + E AL + 
Sbjct: 868 PVT------VELWMPFEGGPRYVRRQYIPDIANNGTVKGFYALITDITNLKQTEEALRQS 921

Query: 559 NEALRKADEIKNSFVQHVSYE 579
            +  R    I +S V  V+ E
Sbjct: 922 EQRYRSLVSILSSIVWTVNPE 942



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 94/295 (31%), Gaps = 24/295 (8%)

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            G  G  I++               IL  +T A    D+N    + N+    L+      
Sbjct: 146 AGVLGTLIEIPSPAQAPINPETPSNILERITDAFVALDRNFCYTYVNQEAARLFGYSREE 205

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L          +   +  + PE    +   +    +Y  + +     +L       +   
Sbjct: 206 LLGK---QLWKDVFVAEAEYPEAEQLRQAMKEQTPLYLEAFSPSLNRYL------EINAY 256

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            +  G +I+ F +++ +  +ET+  +  +     I+  ++ + V   +GR+   N   + 
Sbjct: 257 PSVEGISIY-FRDISERKKIETQLQSSEEFNRRIIESSADCIKVLDLEGRLLSMNSGGQL 315

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS- 524
           + +  + +         +     +++ + D      AI  +        QG         
Sbjct: 316 ILEIHDLQPF-------LDQPWVKFWQDRDHPKAEKAIHLAKVGGTSRFQGYCPTQKGQS 368

Query: 525 -VLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
              +  + P+        Q +    ++T+   AE AL       R   +    F+
Sbjct: 369 KWWDVIVTPIFGKQQQVEQILCLSRDITNLKEAENALRSSETLYRTLSDAVPDFI 423


>gi|209965762|ref|YP_002298677.1| signal transduction histidine-protein kinase BarA [Rhodospirillum
           centenum SW]
 gi|209959228|gb|ACI99864.1| signal transduction histidine-protein kinase BarA [Rhodospirillum
           centenum SW]
          Length = 780

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 110/524 (20%), Positives = 208/524 (39%), Gaps = 41/524 (7%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
              + DQ     +++    V I  ++    +   N  +  +    LA L   P +     
Sbjct: 196 RAELRDQKERMDQVIAGTGVGIWDWNPQTGVLIINERWAGIVGYTLAEL--QPVSIATWR 253

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG------ 411
            L     L      +T  E++F+                G  + V  +    G       
Sbjct: 254 RLVHPQDLE---KAETLLEDVFAGRSPLYACDIRMRHKAGHWVWVRDSGRIMGRDSAGRA 310

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              +    ++T +     +           +  + +G+     D RI   N A  +L+  
Sbjct: 311 LRMVGTHLDVTEERRTLEQALDYRGQIEAILAAVPDGIMTVDRDLRITRVNRAAEALFGW 370

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             + +      + +         E+ G    A   T   D R+ + G    +     + S
Sbjct: 371 PADSIVG----QTVDVLLPEGQAETHGRLARAFFKTEEPDARRQMAG-WRAVQGRKRDGS 425

Query: 530 IIP--------LPNAQTMLT----FVNVTDSVRAE-RALTE----KNEALRKADEIKNSF 572
           + P        L + Q M+      + V +  +A+ RAL +    + +A + A+  KN F
Sbjct: 426 LFPVLVTLSATLIDGQPMVVAALKDMTVIEQQKADLRALADEVGEQLKAAQAANHAKNRF 485

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLA 631
           +  +S+ELR+PL  IIGF++L+ T     ++  K+ +Y   ++ + T LL L++D+LDLA
Sbjct: 486 LAALSHELRTPLNAIIGFSELVATDTDEHIDPEKRREYAADVAQAGTHLLALISDLLDLA 545

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++A  ++L       + L ++  + +   + +  I ++V     L    ADR+ + QI 
Sbjct: 546 RIEANRIELEIEPCPPDGLTSDAVRMLGPSLRDKGIELEVAVAPDLPRVAADRRAVQQIL 605

Query: 692 SKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NA 746
           + +L NA  F+ KG  V +    D    G   F+V++ G  +P D    +   FV   + 
Sbjct: 606 TNLLGNAGKFTPKGGRVTVTVGLDRAVPGQVRFTVEDTGCGVPADKLPLLGQPFVQVGDK 665

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            R    G+GLGL+I    +   GG + I S     T ++  +P+
Sbjct: 666 RRASAPGLGLGLAISRGLVERMGGMLRIESELGRWTRVSFGLPT 709



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 92/298 (30%), Gaps = 25/298 (8%)

Query: 38  IIPIILLIRQRNS---LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE 94
           +     L+R R +    A          +E+ DQ  +   ++         W+ +     
Sbjct: 169 VTTATALLRARRAEEKWALVERHMRLVRAELRDQKERMDQVIAGTGVGIWDWNPQTGVLI 228

Query: 95  IIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL------RKEGQSFDLVAETQ 148
           I  +    +     +   +S   W +  H   L KA   L      R    + D+    +
Sbjct: 229 INERWAGIVGYTLAELQPVSIATWRRLVHPQDLEKAETLLEDVFAGRSPLYACDIRMRHK 288

Query: 149 NDCAI--KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
               +  +  GR+ G  +  R L + G + ++ E     ++  ++    + +  ++   +
Sbjct: 289 AGHWVWVRDSGRIMGRDSAGRALRMVGTHLDVTEERRTLEQALDYRGQIEAILAAVPDGI 348

Query: 207 WHRDQAGDILWANISYKKNT--ETEGIVFQKA---IGESRKLFKEEIKKRMISSSALEKN 261
              D+   I   N + +       + IV Q     + E +      + +    +   +  
Sbjct: 349 MTVDRDLRITRVNRAAEALFGWPADSIVGQTVDVLLPEGQAETHGRLARAFFKTEEPDAR 408

Query: 262 FCETVSTLEHGNNK---SYKIVRVLNSFGEAGIAI------DVSKEITVNDQLTHTYE 310
                     G  +    + ++  L++    G  +      D++        L    +
Sbjct: 409 RQMAGWRAVQGRKRDGSLFPVLVTLSATLIDGQPMVVAALKDMTVIEQQKADLRALAD 466


>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
 gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
          Length = 1398

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 10/248 (4%)

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              R E AL +   A   A+  K+ F+ ++S+E+R+P+  +IG  +LL  +    L+ +Q 
Sbjct: 847  RFRHETALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDT---DLSDEQR 903

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             + + + AS   LL ++NDILD + ++AG ++L +    L  LL      +  K  E N+
Sbjct: 904  DFADMLLASGESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVEKNL 963

Query: 668  RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFS 722
                +   ++  F   D  R+ QI + +  NA+ F+  G+ TV +    +N       FS
Sbjct: 964  EFNCVVSPEVPVFFKGDPGRIRQILNNLAGNAIKFTQNGNVTVAVSMQSENNGDAVLRFS 1023

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
            VK+ G  IPE     +F  F        R   G GLGL+I    + L GG + + S +  
Sbjct: 1024 VKDTGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVELMGGKIGVISHEGN 1083

Query: 781  VTTINCRI 788
             +     I
Sbjct: 1084 GSEFWFTI 1091


>gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1183

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 164/395 (41%), Gaps = 28/395 (7%)

Query: 411 GTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWK 468
           G + +F+    Q+ D               +D     +A+    D  I   NP +  L+ 
Sbjct: 377 GELVVFQRALAQLQDSTDALKESEGRLRTILDTSPLALAISRVSDNAILYVNPRWSELFG 436

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS------FDDERKSLQGT--LEL 520
           +  +  +            + +Y +    D    ++        ++   +   G+    +
Sbjct: 437 SRPDDSN--------GVDAASFYADPADRDRVVELVRGQGYLADYESRMRRADGSEFWAM 488

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +S + ++    P       ++  ++T     E AL E  +    A + K+ F+  +S+E+
Sbjct: 489 MSAAAIDMDGEP----AVCVSTADITKRKEQEDALAEAKQTAEDASQAKSLFLATMSHEI 544

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  ++    LL+   L     +Q +    I  S+T LL ++NDILD + +++G ++L
Sbjct: 545 RTPMNGVLTMAQLLEDMPLAQ---EQKEMARVIRDSATALLTIINDILDFSKIESGKLEL 601

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAM 699
               + L+D++  V + +A +  E  I +    D  L   F+ D  RL QI + +  NA+
Sbjct: 602 EIIEMSLSDVIESVAELLAPRASEKGIGLMTFIDPALPDLFLGDATRLRQIVTNLAGNAV 661

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
            F+ KG   I   A  +G   F++ + G  + ++    +F  F         +  G GLG
Sbjct: 662 KFTDKGYVRISAEAAADGHVRFTISDTGIGLNDEQQAKLFEPFSQADASISRRYGGTGLG 721

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LSI    + +  G + + S     ++    +P ++
Sbjct: 722 LSICRRLVAMMDGEIGVDSQVGQGSSFWFSLPLEQ 756


>gi|71906100|ref|YP_283687.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71845721|gb|AAZ45217.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 835

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 154/377 (40%), Gaps = 20/377 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           + D+E +      +    +D + E   ++  + R+   N  +R+ + T  + L PG    
Sbjct: 309 RADMEKRLQDSQAMLRSAVDTIGEAFVIYDQNDRLAYCNEQYRAYYPTSADLLVPGKTFE 368

Query: 482 NIAATCSRYYNESDGWDLF-AAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTM 539
            I    +      +      A +       R      ++ L D   L       P    +
Sbjct: 369 EIIRAGAERGQYPEAIGRIDAWVAERLAVHRSGNSDLIQALDDGRWLRIREHKTPEGFIV 428

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +++T       A+    EA   A+  K++F+  +S+E+R+P+  I+G   LL    L
Sbjct: 429 GFRIDIT-------AVYAAKEAAEAANAAKSNFLAMMSHEIRTPMNGILGMAQLLLLPDL 481

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                + ++Y   I  S   LL L+NDILD + ++AG ++ +        L+ E      
Sbjct: 482 SK--EEGNEYARTILNSGQTLLTLLNDILDFSKIEAGKLEFSAVAFDPAQLVRETVTLFT 539

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             + E  I I     G  G+ + AD  RL Q+ + ++SNA+ F+++G  V + A   N D
Sbjct: 540 GAVREKGIVIDTDCQGTGGARYRADSTRLRQMLANLVSNAVKFTTQG-FVRVDAREINRD 598

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                  FSV ++G  IP D    +F  F        R   G GLGLSIV     + GG 
Sbjct: 599 RGTALLEFSVSDSGIGIPVDKQSLLFKPFSQADSSTTREYGGTGLGLSIVRRLAEMMGGE 658

Query: 772 VSISSSDEGVTTINCRI 788
           V + S          RI
Sbjct: 659 VGVESESGQGARFWFRI 675



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 10/266 (3%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  + D        +  +  A  I+DQN  L + N  +   +      L    + +E++ 
Sbjct: 313 EKRLQDSQAMLRSAVDTIGEAFVIYDQNDRLAYCNEQYRAYYPTSADLLVPGKTFEEIIR 372

Query: 358 FLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
                 + PE +     W     +V++S  +      L +G+ L +     P G  +   
Sbjct: 373 AGAERGQYPEAIGRIDAWVAERLAVHRSGNS-DLIQALDDGRWLRIREHKTPEGFIVGFR 431

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGV-----AVFGPDGRIKLSNPAFRSLWKTEE 471
            ++T     +         +   +  +S  +      + G    + L + +     +   
Sbjct: 432 IDITAVYAAKEAAEAANAAKSNFLAMMSHEIRTPMNGILGMAQLLLLPDLSKEEGNEYAR 491

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L+ G  +  +      +     G   F+A+     D  + ++ T+ L + +V E  I+
Sbjct: 492 TILNSGQTLLTLLNDILDFSKIEAGKLEFSAVAF---DPAQLVRETVTLFTGAVREKGIV 548

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTE 557
              + Q         DS R  + L  
Sbjct: 549 IDTDCQGTGGARYRADSTRLRQMLAN 574


>gi|303327814|ref|ZP_07358254.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862175|gb|EFL85109.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 1165

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 109/637 (17%), Positives = 223/637 (35%), Gaps = 54/637 (8%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIG 238
               + ++L    +    L ++    +    + G I +AN + +      E  +  + + 
Sbjct: 260 RVEERTRQLRASQAHSLRLLNATSDGIIGTGRDGAISFANSAAQAMLGYAENELIGRNLH 319

Query: 239 ESR-KLFKEEIKK-----RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
           E+   +  +  +       +  +    +N   ++ +  H N     +   +    E G A
Sbjct: 320 ETLHPVLPDGSRNPKESCTLCRARLGSENMRFSLKSFLHKNGSIVLVDGSIAPILEDGAA 379

Query: 293 ----IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
               +                 I  +      I+D+N  L+  N + V+       +L  
Sbjct: 380 TGSILAFHDVGAAYKTELWQRLIFDSAGETFFIWDENHKLRDCNAAAVK-------WLGV 432

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTW--HLPNGQTLH---- 401
               + L         L E           +FS+          W     +G  L     
Sbjct: 433 GSKEEALARIKELQPPLQEDGTPTARALARVFSLCDRKGMVHACWIFRHADGSPLPCEGV 492

Query: 402 -VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            V +TS+   G      +L      E       ++  + ++     + +   +   ++ N
Sbjct: 493 MVRLTSSLGRGYFASVHDLREIRAYEATLQNERRLLSDVVEAAPSAMLICTGESNARMFN 552

Query: 461 PAFRSLWKTE--ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           P+   L      EN        +     C+         ++  A +   D      + TL
Sbjct: 553 PSAALLTGLAAGENCSGIWADYQGYLDLCAGAEQGLPAVNVPMA-VRRLDAPDGPCRETL 611

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              S S + Y   P   AQ +                     A   +   K+ F+  +S+
Sbjct: 612 --ASISTINYRGNP---AQLIWLQDITELRA--------ARLAAEASTRAKSDFLARMSH 658

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  I+G T LL  ++   ++ +Q  Y+E    ++  LL L+NDILD + ++AG M
Sbjct: 659 EIRTPMNAILGMTHLLLQTR---VDERQRHYLESTRQAARNLLGLLNDILDFSKIEAGRM 715

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
            +  +  +L+++L  +   +     E  + +       +  + V DR R  Q+ + + +N
Sbjct: 716 TMENAPFLLSEVLENLADLLVFSAAEKGLELLFYVGPDVPYALVGDRLRFSQVLTNLANN 775

Query: 698 AMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           A+ F+ +GS V L    ++ D         V++ G  +  +   ++F  F        RR
Sbjct: 776 ALKFTHQGS-VTLSVHLESKDAHQARLRVEVRDTGIGLTREQAGTLFQAFQQVDTSTTRR 834

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             G GLGL+I E  + +  G + + S     +     
Sbjct: 835 YGGTGLGLAICERLVGMMDGRIRVESEPGKGSVFAFT 871


>gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1831

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 161/379 (42%), Gaps = 26/379 (6%)

Query: 425  LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                    +K Q   ID +   +     +G+    N A+   ++ E   L  G  + ++ 
Sbjct: 864  ATLSLAEQMKFQQLLIDTVPIPLFYKDANGKFLGFNKAYEETFQVESKDLV-GLTVSDLT 922

Query: 485  ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPN-------- 535
                  Y       L+ A  T     + +++  + +   D+ + +++  +          
Sbjct: 923  ------YLSKKDRQLYQAEDTEVIANQTTIKKEMPIPFGDNKIHHTLYWVTGFKDSNGNP 976

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
               +   +++T      R L    +   +A   K+ F+ ++S+E+R+P+  IIG + L++
Sbjct: 977  GGLVGNIIDITTEKENARQLEIAVKTADEATRAKSDFLANMSHEIRTPMNAIIGMSYLIQ 1036

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +    LN KQS YV  I  S+  LL ++NDILD + ++A  ++L  +   LND  + + 
Sbjct: 1037 QT---DLNRKQSDYVTKIQNSAESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLV 1093

Query: 656  QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----L 710
            Q IA K  +  + + +  +  L    + D  RL QI   + +NAM F+ +G  +I    +
Sbjct: 1094 QIIAHKTQQKGLELLIDIEPNLPVDLIGDPLRLGQILINLANNAMKFTDEGEIIIKARAV 1153

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
            +         F+VK+ G  +  +    +F  F        R   G GLGL+I ++   L 
Sbjct: 1154 EQHEQQVTIEFAVKDTGIGMTPEQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELM 1213

Query: 769  GGHVSISSSDEGVTTINCR 787
             G + + SS    +T    
Sbjct: 1214 AGKIWVESSYGEGSTFLFT 1232



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 59/189 (31%), Gaps = 24/189 (12%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL--AETTLKCKK---LSNHISVF 195
            F L   T+   A+        + + + +  L    +E   A           L+  +   
Sbjct: 824  FTLRVGTRATRAL--------TRSRIELEQLVKERTEALKAAMQKAEAATLSLAEQMKFQ 875

Query: 196  KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK----KR 251
            ++L D++   ++++D  G  L  N +Y++  + E                ++ +      
Sbjct: 876  QLLIDTVPIPLFYKDANGKFLGFNKAYEETFQVESKDLVGLTVSDLTYLSKKDRQLYQAE 935

Query: 252  MISSSALEKNFCETVSTLEHGN---NKSYKIVRVL----NSFGEAGIAIDVSKEITVNDQ 304
                 A +    + +      N   +  Y +        N  G  G  ID++ E     Q
Sbjct: 936  DTEVIANQTTIKKEMPIPFGDNKIHHTLYWVTGFKDSNGNPGGLVGNIIDITTEKENARQ 995

Query: 305  LTHTYEILH 313
            L    +   
Sbjct: 996  LEIAVKTAD 1004



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 278  KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            ++V+      +A +    +  +++ +Q+     ++  + + +   D N      N+++ E
Sbjct: 845  QLVKERTEALKAAMQKAEAATLSLAEQMKFQQLLIDTVPIPLFYKDANGKFLGFNKAYEE 904

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
             ++++   L     +D  L +L        + + + ++     V  +  T K    +P G
Sbjct: 905  TFQVESKDLVGLTVSD--LTYL-------SKKDRQLYQAEDTEVIANQTTIKKEMPIPFG 955

Query: 398  ------QTLHVIV----TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                      V        NP GG +    ++T + +   +    VK   E 
Sbjct: 956  DNKIHHTLYWVTGFKDSNGNP-GGLVGNIIDITTEKENARQLEIAVKTADEA 1006


>gi|20808918|ref|NP_624089.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517579|gb|AAM25693.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 469

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 121/274 (44%), Gaps = 2/274 (0%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E L    L    I   N    +      +     R+       L + ++++  FV +VS+
Sbjct: 197 EPLKKMSLAAREIAKGNFSARVDHFEEDEIGDLARSFNVMARELAQLEDMRKEFVANVSH 256

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELRSP+T+I G+ D +    +     K   Y++ +   +  +  L+ND+L++  +++G  
Sbjct: 257 ELRSPITSIQGYIDGILDGTIPK--EKTYDYLKVVQEETRRMSRLINDLLEMTKLESGEF 314

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            LN +   +N+L+         ++ E ++ +KV  +       ADR ++ Q+ + ++ NA
Sbjct: 315 PLNRTEFDINELIRICIIKFEKRIVEKDLTVKVDFEEDRRFVFADRDKIEQVLTNLIDNA 374

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + FS     + L           +VK+NG  I  +  + ++ RF        + G GLGL
Sbjct: 375 IKFSKPKGIIHLFTEVKGDKVFITVKDNGIGISPEDLEHIWERFYKADKSRGKDGAGLGL 434

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            IV+  I  H   +   S  +  T+    +P K+
Sbjct: 435 YIVKKIIEAHKEEIWAESELKKGTSFTFTLPIKK 468


>gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 588

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 156/400 (39%), Gaps = 40/400 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           ++    +     +D           DG I   N      +  ++  +        +    
Sbjct: 26  RFQISEQRTRTILDSAYNAFIGMNSDGLITDWNRQAEKTFGWKDKEVLGKELADIVIPHK 85

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R  ++       A       ++R  +        +  +E +I P  +    L    + D
Sbjct: 86  YREAHKKGLAHYLATGEGPVLNKRMEITALHRDGHEIPVEMTIFPFEHNGKHLFGSFLHD 145

Query: 548 SVRAE---------------------RALTEKNEALRKA--------------DEIKNSF 572
               +                     + L   N+ L++               + +K+ F
Sbjct: 146 ITERKATESKLRSLYQDLEHRVQERTQELALANKQLKEDASIRQRLYEQAQTANRLKDEF 205

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  VS+ELR+PL  I+G +D+LK        +K S  +  I  ++ I + ++ND+LD++ 
Sbjct: 206 LATVSHELRTPLNVILGHSDILKDPATSPEEAKVS--INAIHRNAQIQVQIINDLLDVSR 263

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           + +G ++L+   I +  ++    +S+       NI+++V    +L S   D +RL Q+  
Sbjct: 264 IISGKLQLHVKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPERLKSVGGDPERLQQVLW 323

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +LSNA+ F+ KG  + +K +         V +NG  I  +    VF RF        RR
Sbjct: 324 NLLSNAIKFTPKGGNITVKLSNVESRVQIDVIDNGKGIDPEFLPYVFERFRQEDATTTRR 383

Query: 753 --GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
             G+GLGL+IV   +  HGG V+ +S+           +P
Sbjct: 384 YGGLGLGLAIVRHIVEGHGGTVAATSAGPNQGAKFTVSLP 423


>gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 752

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 171/399 (42%), Gaps = 28/399 (7%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV---FGPDGRI--KLSNPAFRS 465
             + + + +      E +     +     + ++  GV +       G I     +   R 
Sbjct: 202 YLVTVIDFIAKAARSEIQLKKSEERLEGIVQNIP-GVILQLEMSVSGNIYYTYISDQARE 260

Query: 466 LWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           ++  + +R+  +P   +R +     R    +       ++   +D   ++ +G       
Sbjct: 261 IFGEKVDRILQNPFATLRFMPKEKLRAIVHTIRNLDRISVPLGWDVRLRTRRGY------ 314

Query: 524 SVLEYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                ++   P+A+          +  +    +  L E  E   +AD  K++F+  +S+E
Sbjct: 315 RWFRVTVSVTPSAEGTFYLNAIVLDTEEIHAYQERLKEAKEEAERADRAKSAFLATMSHE 374

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  IIG ++LL +S    L+ +  +Y   I  +   LL L+NDILD++ +++G +K
Sbjct: 375 LRTPLNGIIGMSELLMSS---GLSGELVEYARTIQTAGENLLALINDILDVSQLESGKLK 431

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNA 698
           +      L  +L  V +++  +    ++R  +    ++ + V  D  RL Q+   ++ NA
Sbjct: 432 VERRPCDLKAVLLHVYKTLYPQTIHKSLRFVLEVASEVPAVVVSDEARLSQVLFNLVGNA 491

Query: 699 MDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRR 752
           + F+S+G  V+     +A       +F V++ G  IP +    VF RF         + +
Sbjct: 492 IKFTSRGEVVLRVWMEEAEEGRAKIVFQVRDTGIGIPREELPRVFERFHQVDQGVTRRFQ 551

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGLSI    + L GG + + S +   +    RIP +
Sbjct: 552 GSGLGLSIARDLVELMGGRIEVESEEGKGSCFTVRIPFQ 590


>gi|83589679|ref|YP_429688.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83572593|gb|ABC19145.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 604

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/418 (20%), Positives = 158/418 (37%), Gaps = 34/418 (8%)

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVK 434
             +    KS           +      + +++  G     F  L  ++       +   +
Sbjct: 211 RRVTRPLKSLSLAARQMARGDFSVRVPVASADELGQLAGSFNFLAGELSRTVAALSREKE 270

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                +  +++GV  F   GR+  +NP    L       LSPG  +              
Sbjct: 271 KLNRVVRDMTDGVLAFTASGRVLFANPRAEKLLGLP---LSPGAEL-------------- 313

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
              +L   +  +   E  + +   +   + VL     PL                 A  A
Sbjct: 314 -PVELLDPLRAAVAGEGTTGEINWQ---ERVLAVRAAPLQEEDPCG---------EAAVA 360

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +     +K ++++  F+  VS+ELR+PL+ I G+ + L          +Q +Y   I 
Sbjct: 361 ILQDITTQKKMEQMRREFLASVSHELRTPLSFIQGYGEALADGLATGEKERQ-EYTGIIL 419

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A +  L  LV+D+ DL  + AG + L  + +   +L+  V +     + E+ + ++V  +
Sbjct: 420 AEANRLRRLVDDLFDLNKMAAGHLPLELAEVDPGELVTGVARKYQPLLAEHGLVLEVELE 479

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD  RL Q+   +L NA   +S G  + + A     +   SV + G  IP   
Sbjct: 480 PYLPPVWADAGRLEQVLVNLLDNARRHTSPGGRITISAGLAGRELKISVADTGKGIPAGE 539

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              ++ RF        R   G GLGL+IV+  +  HGG V + S     +  +  +P 
Sbjct: 540 LPYIWERFYKVDKSRSRGDSGSGLGLAIVKGLVEAHGGRVEVVSEPGRGSIFSFYLPL 597



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             ++ +      ++ ++T  +  F  +  + F N    +L  + L+  A  P   ELL+ 
Sbjct: 263 AALSREKEKLNRVVRDMTDGVLAFTASGRVLFANPRAEKLLGLPLSPGAELPV--ELLDP 320

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           LR+A           W+E + +V  +    +D    P G+              + + ++
Sbjct: 321 LRAAVAGEGTTGEINWQERVLAVRAAPLQEED----PCGE------------AAVAILQD 364

Query: 419 LTVQVDLETKYNTLV 433
           +T Q  +E      +
Sbjct: 365 ITTQKKMEQMRREFL 379


>gi|253682578|ref|ZP_04863375.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253562290|gb|EES91742.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 651

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 96/489 (19%), Positives = 198/489 (40%), Gaps = 19/489 (3%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL--EF-LRSAN 363
           H   +L+N++  I ++D+     F N++ + L   D+         ++L   +F  R  N
Sbjct: 142 HLKNVLNNISEGIIVYDEFGKFYFCNKASMCLIGDDVKKFDVRGFFNKLGCYDFEYRGKN 201

Query: 364 KLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
            L    ++K     I   + K  + + +  ++    +   I+  N    TI   +++T  
Sbjct: 202 LLQLYYDFKYKNRPIREFIIKLKDNNNNNRYIELNSSS--IINENCVVNTIITLKDITSI 259

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIR 481
                K     +   + ++ +   +AV   D    KL+N  ++ +     N  +  T   
Sbjct: 260 KSKGIKLQEQREFINDVVNTIDVPIAVIEYDNLNYKLANSKYKDMMFLNNNFNNSVTEPF 319

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I       +N+               D+  + +      +  V E SI  L       T
Sbjct: 320 -ILDVIHNIFNKGIHKKEHVLAPYVIKDKNGNERYYKIKFTGKVNEKSINKLNKIFIHAT 378

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +               N+ L+   ++K+ F   +S+ELR+PLT I     L +      
Sbjct: 379 DIT---------EEIVHNKELQNISKMKDEFFNMISHELRTPLTIINSSVQLARDIYKEE 429

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +     + +  +  +   LL L+N+ILD++  +AG ++L YS   +  +   +  S++  
Sbjct: 430 ITRNIERVLLRVDQNCRRLLKLINNILDISKAEAGFLQLQYSDFDIVVVTENIVSSVSIY 489

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
                I++   ++ +      D+ +  +I   +LSNA+ F+ KG  + +    +N     
Sbjct: 490 AKSRGIQLIFDTNKEEKLVALDKDKYEKIILNLLSNAIKFTPKGRKIYVTTLIENNKVQI 549

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            VK+ G  I ++  K++FNRF+   +      +G GLGL++V++ + L  G++ ++S   
Sbjct: 550 KVKDQGIGIEKEDLKTIFNRFIQIRNNTTNCVQGTGLGLALVKNLVELMQGNIKVNSKIN 609

Query: 780 GVTTINCRI 788
             T      
Sbjct: 610 EGTEFTITF 618


>gi|253576380|ref|ZP_04853710.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844273|gb|EES72291.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 479

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 84/397 (21%), Positives = 168/397 (42%), Gaps = 25/397 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + TS+  G     F ++  +++   +      +     +  +++ V     +G + L+NP
Sbjct: 95  LRTSDEIGELAITFNHMAEELENTIRSLKHEKEHLSSVLRSMNDAVITLDREGAVILTNP 154

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L +   +    G      +A   +   +     +F  ++    D++ ++      +
Sbjct: 155 PGDRLLQLWGDLTEDGEEDLPASAGEGQMVPQP-LLPMFRRLLVQESDQKMNVH-----V 208

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              V    + PL +   +   V V   V  E  L          ++++  FV +VS+E+R
Sbjct: 209 MKGVWSVHMAPLSSDGEVRGAVAVLRDVTEEVNL----------EKMRRDFVANVSHEIR 258

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL+ + G+++ L    + S   + ++  + I   S  +  LV D+LDLA ++AG   + 
Sbjct: 259 TPLSMMQGYSEALLDG-MASSPEESAELAQVIYDESLRMGRLVRDLLDLARMEAGHTDMV 317

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              I   +L   V +    +  +N + + +  +       AD  RL Q+ + +L NA   
Sbjct: 318 MRKIDFRELAERVDRKFQVRAKDNGVELVLELEDGELQLQADEDRLEQVLTNLLDNAFRH 377

Query: 702 SSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGV 754
           + +G  V +KA  + G+       +V + G  IP +  + +F+RF        RG+  G 
Sbjct: 378 TPEGGKVTVKAHMETGEMGKQLHVAVSDTGVGIPSEDLRYIFDRFYKADKARVRGENGGT 437

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGLSIV++ I  H G +   S     T  +  +P +
Sbjct: 438 GLGLSIVKNIIAAHHGSIWADSEIGKGTVFHFLLPVE 474



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 92/297 (30%), Gaps = 27/297 (9%)

Query: 281 RVLNSFGEAGIAIDVSKEI------TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           R  +  GE  I  +   E       ++  +  H   +L ++  A+   D+   +   N  
Sbjct: 96  RTSDEIGELAITFNHMAEELENTIRSLKHEKEHLSSVLRSMNDAVITLDREGAVILTNPP 155

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              L ++           ++L         +P+ L    ++  +          K   H+
Sbjct: 156 GDRLLQLWGDLTEDG--EEDLPASAGEGQMVPQPL-LPMFRRLLVQ----ESDQKMNVHV 208

Query: 395 PNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETID---HLSEGVA 448
             G     +   +  G   G + +  ++T +V+LE      V      I     + +G +
Sbjct: 209 MKGVWSVHMAPLSSDGEVRGAVAVLRDVTEEVNLEKMRRDFVANVSHEIRTPLSMMQGYS 268

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
               DG       +        +  L  G  +R++          +D   +   I     
Sbjct: 269 EALLDGMASSPEESAELAQVIYDESLRMGRLVRDLLDLARMEAGHTDM--VMRKIDFREL 326

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            ER   +  +    + V    ++ L + +  L      D  R E+ LT   +   + 
Sbjct: 327 AERVDRKFQVRAKDNGV--ELVLELEDGELQL----QADEDRLEQVLTNLLDNAFRH 377


>gi|168180587|ref|ZP_02615251.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226949882|ref|YP_002804973.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|182668500|gb|EDT80479.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226842408|gb|ACO85074.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 569

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 167/396 (42%), Gaps = 37/396 (9%)

Query: 401 HVIVTSNPRGGTIW-MFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VIV S    G +   F    ++     +E +           +  +  GV     + ++
Sbjct: 202 RVIVNSEDEIGRLGRTFNAMADILENSLVEVRDKQ--NRLEAILKSMDSGVVAIDKEFKV 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP    L+  + + +  G ++ +            D    +  I   + ++R     
Sbjct: 260 IMINPYANKLFGIKRDII--GENLMDNIRDFELEKVLKDKEPGYKEIGILWPEKRTLRVK 317

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +++S            N  T+    ++TD  + E               ++  FV +V
Sbjct: 318 TTDIISK---------YDNIGTVAVVQDITDIKKLE--------------NMREQFVANV 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF++ LK          + ++++ I+  +  L  L+NDIL L+ ++  
Sbjct: 355 SHELKTPLTSIKGFSETLK---YVDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQ 411

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L    I LN+L+ +V   +     + NI+I ++ + K+   + ++ +  Q+   ++ 
Sbjct: 412 KQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGE-KVPLLIGNKDKYNQMIINLVD 470

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ ++     V +   +D G+ +F V++ G  I E+    +F RF        R   G 
Sbjct: 471 NAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGT 530

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    G + + S  +  T    +IP 
Sbjct: 531 GLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPL 566



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSK--EI 299
           LF   I   MI      +     ++  +            +   G    A+ D+ +   +
Sbjct: 171 LFSSRISMAMIKPIKNLEFVTSRIARGDFDRRVIVNSEDEIGRLGRTFNAMADILENSLV 230

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V D+      IL ++   +   D+   +   N    +L+ I    +      + L++ +
Sbjct: 231 EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPYANKLFGIKRDIIG-----ENLMDNI 285

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWM 415
           R         + +   + I  ++            P  +TL V    I++     GT+ +
Sbjct: 286 RDFELEKVLKDKEPGYKEIGILW------------PEKRTLRVKTTDIISKYDNIGTVAV 333

Query: 416 FENLTVQVDLE 426
            +++T    LE
Sbjct: 334 VQDITDIKKLE 344


>gi|193212325|ref|YP_001998278.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
 gi|193085802|gb|ACF11078.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
          Length = 596

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 150/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G     F  L+ ++    +     +   E +  + E + V    G I L+NPA   L   
Sbjct: 227 GRLARAFNYLSEEI---VRLTRKEEWLREVLSSIRESIIVTNASGEIVLANPAASRL--- 280

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
               +  G   R+I      +    +  +LF  +              +    + V + +
Sbjct: 281 ---FMIEGARKRSIPVD---HIELPEMRELFVRVHARQSGIYNEELSVMTARGERVFKVT 334

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +P+   +     V V + +   R L          +  +  FV  VS+ELR+PL +I G
Sbjct: 335 AVPVVKGEQFDGTVLVINDITRLRNL----------ERTRRDFVSSVSHELRTPLASIKG 384

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +T+ L    +       + ++  I   S  L  L+ND+LDL+ +++G +  N+  + +  
Sbjct: 385 YTETLLEGAVND-PEHATAFLRIIQQESEQLTALINDVLDLSRIESGKIIYNFEPVDVKP 443

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STV 708
            L +             +RI++     L   +ADR     +   ++ NA+ +       V
Sbjct: 444 ALEKTMALFEPAASRKGVRIELNVPDGLPPVLADRNYFDIVMRNLIDNAVKYVDANRGRV 503

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            + A + + +    V +NG  IP+   K +F RF        R   G GLGLSIV+  + 
Sbjct: 504 RVSACKADQNVAIEVSDNGIGIPQADLKRIFERFYRVDKARSRELAGTGLGLSIVKHILL 563

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            H G+V + S     +T     P
Sbjct: 564 AHKGNVEVRSKTNSGSTFTVTFP 586



 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            + + +  +     E+L ++  +I + + +  +   N +   L+ I+ A   + P +   
Sbjct: 238 EEIVRLTRKEEWLREVLSSIRESIIVTNASGEIVLANPAASRLFMIEGARKRSIPVDHIE 297

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L  +R             + E +  +    E       +P       +V      GT+ +
Sbjct: 298 LPEMRELFVRVHARQSGIYNEELSVMTARGERVFKVTAVP-------VVKGEQFDGTVLV 350

Query: 416 FENLTVQVDLETKYN 430
             ++T   +LE    
Sbjct: 351 INDITRLRNLERTRR 365


>gi|110677757|ref|YP_680764.1| hybrid sensory histidine kinase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453873|gb|ABG30078.1| hybrid sensory histidine kinase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 733

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 175/373 (46%), Gaps = 15/373 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +   + +   ++I+ +++G A + PD  + ++N ++ +++   E+ + PG     +   
Sbjct: 53  KQIERVERRLWQSIETINDGFAFYSPDLELIMANNSYLAVFDGLED-MQPGVSYVTVLQF 111

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSIIPLPNAQTMLTFV 543
            +     + G    A       +  +S +     ++L ++  +       P+   +   +
Sbjct: 112 LTEEGIVNTGDLRPAEWRQKMIERVQSPEPEAVVIQLWNNEYIRMIDRRGPDGDIISLGI 171

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T +VR E  L     +   A   K++F+ ++S+E+R+P+  ++G  D+L  +    L+
Sbjct: 172 NITAAVRYEEKLEAARASAEAASRAKSAFLANMSHEIRTPMNGVVGMADVLTET---PLS 228

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YV+ I  S   LL ++ND+LD + ++A  ++L+     L   ++EV + + +   
Sbjct: 229 EEQRLYVDTIKNSGEALLVIINDVLDYSKIEAEKLQLHPEPFNLEKSIHEVLRLLQSIAR 288

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--- 718
           +  I + V     L S F+ D  RL QI + +L NA+ F+++GS TV +    D      
Sbjct: 289 DKGILLSVDYALFLSSDFIGDPGRLRQILTNLLGNAVKFTTEGSVTVRVSGKPDEATGKV 348

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                V++ G  IPEDM   VF  F        R+  G GLGL+I +  I +  G + ++
Sbjct: 349 ILQIRVEDTGIGIPEDMIDHVFGEFNQVESERNRQFDGTGLGLAITKKLIKMMNGQIWLT 408

Query: 776 SSDEGVTTINCRI 788
           S +   +     I
Sbjct: 409 SEEGVGSCFGFEI 421



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 2/135 (1%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    +       ++ +  +    A +  +  L   N S++ +++  L  +    S   +
Sbjct: 50  AAHKQIERVERRLWQSIETINDGFAFYSPDLELIMANNSYLAVFD-GLEDMQPGVSYVTV 108

Query: 356 LEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L+FL     +    L    W++ +    +S E       L N + + +I    P G  I 
Sbjct: 109 LQFLTEEGIVNTGDLRPAEWRQKMIERVQSPEPEAVVIQLWNNEYIRMIDRRGPDGDIIS 168

Query: 415 MFENLTVQVDLETKY 429
           +  N+T  V  E K 
Sbjct: 169 LGINITAAVRYEEKL 183


>gi|119512709|ref|ZP_01631781.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
 gi|119462629|gb|EAW43594.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
          Length = 1287

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 139/736 (18%), Positives = 272/736 (36%), Gaps = 130/736 (17%)

Query: 165  FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYK 223
             + IL L        +     K L   I+  + LF  +   +    D     + AN    
Sbjct: 418  VVFILDLSERKQAKQQIVQLNKDLQRRIAELQTLFQVIPIGIGIAEDAECKTIRANPCLA 477

Query: 224  K-------------NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
            +                 E     K   E R+L  EE+  +  ++  +E   CE     E
Sbjct: 478  QQLGVSSDENVSLSAPSAERPTSFKVYREGRELLPEELPMQYSAAHGVEMLNCELDIVHE 537

Query: 271  HGNN-KSYKIVRVLNSF-----GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIA 320
            +G   K  + V  L        G  G  +D+++    E T+ +Q     ++L+ + + + 
Sbjct: 538  NGKVVKLLEHVAPLFDEEGDSRGSVGAFLDITERKQVEETIQNQQKWLEDVLNMMPMPLL 597

Query: 321  IFDQN-RYLQFHNRSFVELWEID----------------LAFLATNPSNDEL--LEFLRS 361
              +     + F NR+  +L   +                         ND++      R 
Sbjct: 598  FIEPGTGRVIFANRAVDDLAGGEFPKGIPVEEYHTAYYCTDMAGNRIPNDQIPGARIARG 657

Query: 362  ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
                  +++W T         +S     DT    +G         +P    +  F+++T 
Sbjct: 658  ERLDGLEMDWHTK-----ESVRSIRIFSDTLPAMHG---------HP-ATCVSAFQDITN 702

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT------------ 469
              ++E       +      +  S+   +      + L +  ++ L +             
Sbjct: 703  LKEIEKARTLNYRRLQLLFNTASD---LLSSQQPLALIHSFYQKLAEQIGLDVYFNYLAE 759

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS------FDDERKSLQGTLELL-S 522
            + +++        ++   ++ Y           I+         ++ ++S     EL+ S
Sbjct: 760  DHSQVMHLVSFTGVSEEIAKEYECLKFGQSVCGIVAQERHPIYIENVQQSTDPKTELIRS 819

Query: 523  DSVLEYSIIPL---------------------PNAQTMLTFVNVTDSVRAERA-----LT 556
              +  Y   PL                      N + M+  V+   ++  ER+     L 
Sbjct: 820  LGITAYYGYPLIASARLLGTLCFGSRSCSRFTENQRGMMQAVSDQIAIAMERSSLIASLQ 879

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            ++ E LR+A+ +K+ F+  +S+ELRSPL  I+G+  LL++ KL  +  + ++ +E I  +
Sbjct: 880  QQTEQLREANRMKDEFLAILSHELRSPLNAILGWAQLLRSRKLSDI--QIAKAMETIERN 937

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS--IATKMHENNIRIKVISD 674
            + +   LV D+LD++ +  G + L+  T  L  L+    ++  +A +  E ++RI +I  
Sbjct: 938  ARMQTQLVEDLLDISRMIRGKLHLHVCTCNLVPLIESAVETVHLAAQAKEIDLRISLIPS 997

Query: 675  GKLGS------FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDF------ 719
             ++           D +RL QI   +LSNA+ F+  G  + ++      D+         
Sbjct: 998  PEMPQDHSRFLVSGDIERLQQIIWNLLSNAIKFTPTGGRIEIRLCQSVEDDEKLARTITS 1057

Query: 720  --IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
                 V + G  I  +    VF+RF        R   G+GLGL+IV   + LHGG +S+ 
Sbjct: 1058 YAQIQVIDTGIGIKPEFLPYVFDRFRQADSSSTRSYGGLGLGLAIVRHLVELHGGIISVD 1117

Query: 776  SS-DEGVTTINCRIPS 790
            S  +    T   ++P 
Sbjct: 1118 SQGENEGATFTVKLPL 1133


>gi|212639830|ref|YP_002316350.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561310|gb|ACJ34365.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 729

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 114/630 (18%), Positives = 245/630 (38%), Gaps = 56/630 (8%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++    +  ++ + + ++FK LF+     +   D+ G  + AN S+     +  +  ++
Sbjct: 134 RDITSKKVLERERTINETLFKDLFNRAGDCIVIFDEQGRFIDANPSF---CASVNVSKEE 190

Query: 236 AIGESRKLFKE----EIKKRMISSSALEKNFCETVS-TLEHGNNKSYKIVRVLNSFGEAG 290
               S + F      ++ ++++ +          +   L  G  K +++    N      
Sbjct: 191 LFKLSMQTFIPIEYYDVFEQLLLTLKRTGTVSSELPFILGDGMQKLFELTLTANVHSGFF 250

Query: 291 IAI------DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
           +AI        S E+ +         I      AI I D    +   N +    +E+ L 
Sbjct: 251 MAIMRNVTEKRSMEMNLQRSEERFRAIFEQAHEAILICDDFGNILRANPAASRTFELPLH 310

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVI 403
            L     +  L++F+   N        +  +  +   ++  E  ++ T+H+PNG+   + 
Sbjct: 311 DLV----HANLMQFIDGKN--------EKVRRVLRQFFRDGEIREELTFHMPNGEKKQLE 358

Query: 404 VTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            TS      G  + +F N++ +  +E +     +      +H  +G+ +   + RI  +N
Sbjct: 359 FTSKKGVINGYHLTIFRNVSERRKMEKQLREQEQKFRNVFNHAMDGIVLMDNEKRIFDAN 418

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           P    ++   + +L        I ++    +             T  D E K+       
Sbjct: 419 PVACRIFALSKEQLMEKRLHTFIGSSDLHKFQTWLNNGEEEEQFTITDGEGKT------- 471

Query: 521 LSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
               ++E S  P +     ++   ++T+    E  L + +                +++E
Sbjct: 472 ---KIVELSFKPNIIEHVGLMMVRDITEKKEMEEQLRKSDTLSVVG-----QLAAGIAHE 523

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+T + GF  LL+   +G+   + + Y   I +    + +++ + L LA   A    
Sbjct: 524 IRNPMTALKGFIQLLQ-GSIGNDCEQYNMYFHVIMSELKRIESIITEFLVLAKPQA---- 578

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           ++Y    +  ++ E    ++ +   +NI+I+   +        D ++L Q+F  IL NA+
Sbjct: 579 VHYERGDVAKIMQETVDLLSVQATMHNIQIEATYEPVPP-IYCDPKQLKQVFINILKNAI 637

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           +   KG T+ +  A        +V++ GS IP+D  K +   F       + RG GLGL 
Sbjct: 638 EVMPKGGTITVSVAHVAEGVRIAVRDEGSGIPKDKIKKLGEPFY----TTKERGTGLGLM 693

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    I  H G + + S     TT    +P
Sbjct: 694 VSYKIIEEHQGRIDVESEVGVGTTFYITLP 723



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 118/335 (35%), Gaps = 27/335 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           + ++  ++ ++     IL  +T AI +   +      N +   L+      L        
Sbjct: 19  IQEKEAIDRRINMYDFILQQVTDAIVLVKDDGTFVDVNEAACRLFRASKEQLLQK----N 74

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV---IVTSNPRGG 411
             E+L     +PE +    ++  +   +K+ +  +    L +G+  HV   +   N +  
Sbjct: 75  FEEYL---YLVPEHIVR--FQIQMLRKFKAYDD-ELIIRLADGEIKHVQLFMRRYNEQPF 128

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            ++M  ++T +  LE +      +  +  +   + + +F   GR   +NP+F +      
Sbjct: 129 NLYMIRDITSKKVLERERTINETLFKDLFNRAGDCIVIFDEQGRFIDANPSFCA------ 182

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEY 528
              S       +     + +   + +D+F  ++ +             +L D    + E 
Sbjct: 183 ---SVNVSKEELFKLSMQTFIPIEYYDVFEQLLLTLKRTGTVSSELPFILGDGMQKLFEL 239

Query: 529 SIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           ++   + +   M    NVT+    E  L    E  R   E  +  +  +  +  + L   
Sbjct: 240 TLTANVHSGFFMAIMRNVTEKRSMEMNLQRSEERFRAIFEQAHEAI-LICDDFGNILRAN 298

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              +   +      +++   Q+++  +     +L 
Sbjct: 299 PAASRTFELPLHDLVHANLMQFIDGKNEKVRRVLR 333


>gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1364

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/541 (18%), Positives = 200/541 (36%), Gaps = 63/541 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  +  Q+     ++ + + AI     +  +   N +   ++      +A       LL
Sbjct: 342 REEVLRKQME-LAALVSHSSEAIVAETPDGEITHWNPAAEAMFGYPAD-VAIGQDLTTLL 399

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------- 409
                    P+        ++      +    +   H  +G  + V+ +  P        
Sbjct: 400 S--------PQPYAMPQIDQDEAPPVAALSAAQTMRHR-DGHQVFVLASKAPIIEHDNAV 450

Query: 410 GGTIWMFENLTVQVDLETK---YNTLVK---------------VQGETIDHLSEGVAVFG 451
            G    F +++ +V    +    N  ++               +Q   + H    +    
Sbjct: 451 SGHSHFFRDISERVRSHQRIVDLNASLEHQVAERTSELVQFSVLQRAILAHAGYAIIATD 510

Query: 452 PDGRIKLSNPAFRSLWKTEENRL------SPGTHIRNIAATCSRYYNESDGW--DLFAAI 503
             G + + NPA   L     + +      S       +     R   ++         A+
Sbjct: 511 SSGFVTMFNPAAEKLLGYSADDVIGRRKASQFIEADELQERALRLAEQTGTPVAGTLEAV 570

Query: 504 ITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQT---MLTFVNVTDSVRAERAL 555
                  R        +  D      +L  S +   N Q    +   V++T+    E+ L
Sbjct: 571 AALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTLRDDNDQVIGYLGVAVDLTEQKLHEKQL 630

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               +A R A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L       V  I  
Sbjct: 631 RLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---LPGAAQDMVTKIDR 687

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-D 674
           S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +    + + V    
Sbjct: 688 SARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLP 747

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSS 729
            +    + D  R+ Q+   ++ NA+ F+ +G  V+      +GD      +FSV++ G  
Sbjct: 748 RECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKIKLLFSVRDTGIG 807

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++    +F+ F+       RR  G GLGL+I    I L GG + + S     +     
Sbjct: 808 ISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEVESVPGRGSEFYFV 867

Query: 788 I 788
           I
Sbjct: 868 I 868


>gi|153941037|ref|YP_001392041.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|170754687|ref|YP_001782369.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152936933|gb|ABS42431.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|169119899|gb|ACA43735.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|322807072|emb|CBZ04646.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 702

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 99/506 (19%), Positives = 210/506 (41%), Gaps = 15/506 (2%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFL 346
           ID+ ++  + D + +   +++N++  I +FD++  L   N++  ++ E      +D+  +
Sbjct: 170 IDILRKKEL-DYIKYLNNVINNISEGILVFDKHSKLILWNKAIEQIGEMKIKKILDIEEI 228

Query: 347 ATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                   L +      K+ +   ++ +  +++       +T+K  +   N  +  ++  
Sbjct: 229 INEYDIYILDDHKNMKYKIKKMNPDYNSSVKDLLLKLVKKDTNKIKYIEYN--SNPIMDE 286

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFR 464
           +N    TI   +N+T  ++ +       +     +D +   +AV   PD   KL N  + 
Sbjct: 287 NNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYKLVNERYE 346

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L +    +   G    N      R     +  ++   +      E         L S  
Sbjct: 347 ELVERLHTKKIKGNLFGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSGE 406

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              + +  + +       V++  S   E    + N  L K +++K+ F   +S+ELR+PL
Sbjct: 407 ERFFKVRYIYHETKNKKRVHIHGSDVTEE--FKSNLELEKVNKLKDEFFTIISHELRTPL 464

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I     L        +N    + ++ I+ ++  LL L+N+ILD++  +AG + LN   
Sbjct: 465 TIIYSSLQLAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNEY 524

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             +      +  SI    +  NI +   +  +      D+ +  +I   +LSNA+ F+ +
Sbjct: 525 FDIVLETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTPE 584

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
             ++ +       +F   VK+ G  IP++    +FNRF    ++      G G+GLS+V+
Sbjct: 585 NKSIYVTLKIYKNNFKLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLVK 644

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
             ++L  G + + S     TT   +I
Sbjct: 645 KIVDLMDGEIKVYSILGKGTTFTVKI 670



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 418 NLTVQVD--------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           N++ Q+         L  K    +K     I+++SEG+ VF    ++ L N A   +   
Sbjct: 158 NISKQIKNKSEIIDILRKKELDYIKYLNNVINNISEGILVFDKHSKLILWNKAIEQIG-- 215

Query: 470 EENRLSPGTHIRNIAATCSRYYNESD 495
            E ++     I  I      Y  +  
Sbjct: 216 -EMKIKKILDIEEIINEYDIYILDDH 240


>gi|258513937|ref|YP_003190159.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777642|gb|ACV61536.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 766

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 98/513 (19%), Positives = 195/513 (38%), Gaps = 40/513 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                IL  +   +     +  +QF N+   +    DLA  A   + DE+   +     L
Sbjct: 19  RRLSNILECIGDGLITAATDGKVQFMNKVAEKFLCWDLAE-AKGKNIDEVFRMI----NL 73

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPR-------GGTIWMFE 417
                  T  + I +        KDT  L  +G   +V  + +P           + +F 
Sbjct: 74  ETNEILYTHYDQIIATQSPRGLRKDTVLLSRDGMLRYVSASISPVKDMNNFVEAIVIVFR 133

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS-- 475
           ++T +  +E   N+         D    G+ +      I   N A   +     +++   
Sbjct: 134 DITRRRSIEDAINSKQAKLKAVFDAAPVGIMIVNSCHIIIELNDALGKILGRRPDQILLK 193

Query: 476 ------PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-----LSDS 524
                    H      +C     +         +I     E K ++   E+     +   
Sbjct: 194 KVGEGLGCKHRLENKKSCENGEIKCPLRYTIQKVIEE-QTECKGIEILFEMKKGDNIRKV 252

Query: 525 VLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             + + +P+        ++   ++ +  R  + L +  EA   A   K+ F+ ++S+E+R
Sbjct: 253 WFKLNAVPIEIEKEKHVLMVIDDINEHKRLIKELKKAKEAAEAASRAKSEFLANMSHEIR 312

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  +IG       + L  L   Q + +         L+N++NDILD + ++AG + + 
Sbjct: 313 TPLNGLIGML---DLTLLSDLTVDQKENLSIARTCVDSLMNVLNDILDFSKIEAGKLLIE 369

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                L +L+ +  +S + K  E +I IK  +      +   D  RL Q+ + +L NA+ 
Sbjct: 370 NVGFNLPELVEKTVKSYSAKASEKDIGIKYSVCSDVPETLSGDPNRLRQVLNNLLGNAIK 429

Query: 701 FSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
           F+  GS  + ++      +++   F V + G  I     + +F  F  V  ++  +  G 
Sbjct: 430 FTQIGSVGIEVELLEKTREYVTLKFIVTDTGIGISASDREKLFQGFSQVDGSYTRKYGGT 489

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL+I +  I    G + + S++ G +     
Sbjct: 490 GLGLAISKQLIEKMDGQIWVESNNHGGSKFIFT 522


>gi|227902982|ref|ZP_04020787.1| histidine kinase [Lactobacillus acidophilus ATCC 4796]
 gi|227869225|gb|EEJ76646.1| histidine kinase [Lactobacillus acidophilus ATCC 4796]
          Length = 618

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 170/422 (40%), Gaps = 40/422 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K   H+ +G  +  V + SN   G +      L+V+++  + + ++  +     + 
Sbjct: 211 EEMQKQALHIADGDYSSQVKIYSNDELGQLGKALNTLSVRIERSQEESDSERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    +    +E  +     I  +         ++   DL +
Sbjct: 271 HMSDGVLATDRHGNVSVVNHMALTFLNAKEEDVIN-KPIAEVLG-----LKDTSSQDLIS 324

Query: 502 ---AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               I+ + D+  +          + +L  S   +      ++          E+     
Sbjct: 325 SQKEIVITLDEGTR---------DEMILHASFSLIKRVTGFVSGSVCVLHDVTEQQ---- 371

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K +  +  FV +VS+ELR+PLT++  + + L             +++E     + 
Sbjct: 372 -----KNENSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKD-PEIAPKFLEVTQQETG 425

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-------HENNIRIKV 671
            ++ ++ND+L L+ +D G+ K++   + LND +N +       +       H+    IK 
Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKR 485

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +      D  +++Q+   I++NA+ +S  G  + ++  ++    I S+ + G  IP
Sbjct: 486 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGIP 545

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P
Sbjct: 546 RKDLAKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605

Query: 790 SK 791
            +
Sbjct: 606 YE 607


>gi|189423187|ref|YP_001950364.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419446|gb|ACD93844.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 774

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 114/634 (17%), Positives = 235/634 (37%), Gaps = 56/634 (8%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG---------IVFQKAIGESRKL 243
              ++  +     +   D+    L+ +  +  +               VF +     ++L
Sbjct: 4   EKLRLFVEYAPAALAMFDREMRYLYVSRRWLTDYRLGDRDLRGLSHYDVFPEIQQRWKEL 63

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
               +    +S+ +      +          + + +       G    + D++K     D
Sbjct: 64  HSRCLAGESLSADSDRFVRADGTVQWLRWEIRPWFVT-PDEIGGIVIFSEDITKLKQAED 122

Query: 304 QLTHTYEILHNLTVAIAIFDQ--NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            L   YE+L   +  IA+F +  +  +   N + V  +           S+DELL     
Sbjct: 123 VLRR-YELLSKYSRDIALFIRRGDGRILEANDAAVRTYGY---------SHDELLGMTIY 172

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMF 416
             + P+          +          +       G+   V V+S           + + 
Sbjct: 173 DLRTPDCAAPA--PAQMEEADTHGILFETVHRTKEGRAFPVEVSSCGVDIGDDRILLSLV 230

Query: 417 ENLTVQVDLETKYNTLVKV-------QGETIDHLSEGVAV-FGPDGRIKLSNPAFRSLWK 468
             ++ + + E +     +V           +  +   V +   P   +   N A   L +
Sbjct: 231 REISKRKEAEAELKRNAEVEHARLAELEALMQAVPAAVLISHDPHCHVITGNHAAYELLR 290

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            E    +  ++     +     +   +       +  +            E+L D+    
Sbjct: 291 MEYGSNTSKSNPDAKTSHFKVLHQGKELSVAELPLQQAIATGMPVCNFEEEILFDNGDCV 350

Query: 529 SI----IPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           S+    +PL +A       +  FV++   V+A+    +   A   A+  K++F+ ++S+E
Sbjct: 351 SVYGNAVPLRDASGSITGVVAAFVDIGQLVQAQEEARQARLAAEAANRAKSAFLANMSHE 410

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+G   LL+ ++   L  +Q  Y+  I +SS+ LL+L+ND+LDL+ ++AG + 
Sbjct: 411 IRTPLNGIVGTAQLLEFTR---LTGEQKDYLADIKSSSSTLLSLLNDVLDLSKIEAGKIT 467

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNA 698
           L      L   ++ V +S+ +      ++I++ I D        D+ R  QI   +L NA
Sbjct: 468 LESLDFRLRASIDGVIKSLKSLAQSKGLQIELQIPDSVPDCLKGDQTRFKQILLNLLGNA 527

Query: 699 MDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRR 752
           + F+  G  TV ++    + D       VK+ G  I   M + +F  F         +  
Sbjct: 528 VKFTETGGITVSVRLKEQHNDQLLLEIDVKDTGIGISPQMLEMIFEPFTQAETSLTKKYG 587

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G GLGL+I +  + + GG +   S   G +T + 
Sbjct: 588 GTGLGLAICKRLVTMMGGQLWAESVAGGGSTFHL 621


>gi|291568909|dbj|BAI91181.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 933

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 106/526 (20%), Positives = 210/526 (39%), Gaps = 41/526 (7%)

Query: 291 IAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAF 345
           + +D+     V  +L         I     V I   D ++      N+ F EL       
Sbjct: 167 MLMDIIDMKQVEQRLALRETQLRAIFEQAAVGINQADIKSGLFIRANQCFCELLGYSEHE 226

Query: 346 LATNPSNDELL---EFLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLH 401
           L    + +++    + +R    + E       +  I SV  +    HK+   +    +  
Sbjct: 227 LYQK-TFEQVTHPEDLIRCLPLMQE-----LHRGEIESVSLEKRYLHKNGMAIWTKGSFS 280

Query: 402 VIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA--VFGPDGRI-- 456
           +I  S       + +  +++ +   E               ++   +   V   D     
Sbjct: 281 LIYNSQGEAISHLAIVVDISDRRRAEEALKFSQARLESIATNIPGAIYSYVVSSDNLFGF 340

Query: 457 KLSNPAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +  +   R L++ E  ++   + I  + I       Y +        A ++SF  E    
Sbjct: 341 EYISEGCRELFELEAEQVLADSKILLQQIHPDDVPTYYQKIMDS--QADLSSFSHE---W 395

Query: 515 QGTLELLSDSVLEYSIIP--LPNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKN 570
           +  L       +  +  P   PN   +     ++++D  +AE  L    E    A++ K 
Sbjct: 396 RHILPSGKTRWILGNCRPEKRPNGDILWQGVVLDISDRKQAEEELVRAKEVAEAANQAKT 455

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+ELR+PL  I+GFT LL  +   +L   Q   +  I  S   LL+L+NDILDL
Sbjct: 456 TFLTNMSHELRTPLNAILGFTQLL--NYGDNLTEHQHNNLNIIQRSGEHLLSLINDILDL 513

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG + ++     L  +L+E+K   + K  + N+ +  +    L  ++  DR +L Q
Sbjct: 514 SKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKASQKNLYLDCVYSPDLPRYIRGDRLKLRQ 573

Query: 690 IFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           I   ++ NA+ F+ +G  VI      + ++        +V ++G  +  +    ++  F 
Sbjct: 574 IMINLIGNAIKFTEQGRVVITADHKFISSSPPICCLQIAVTDSGVGMTPEEIAQLYEPFF 633

Query: 744 SN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              A    + G GLGL+I + ++ L G  + + S     TT   ++
Sbjct: 634 QAQAGIDSQEGTGLGLTICQKYLQLMGAEIEVISEVGHGTTFKFKL 679


>gi|224823753|ref|ZP_03696862.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
 gi|224604208|gb|EEG10382.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
          Length = 1141

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 19/374 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     I      +      G I +SNPA    +      L  G  I  +     R ++
Sbjct: 359 EEHFRAVIRSAPNAMLAVDQQGFITMSNPAAVRYFGYSPEELQ-GKTIEMLLPERFRKHH 417

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFVNVTDSV 549
                   A        E + L    +   +  +E    +++     QT+ + +++++  
Sbjct: 418 PMLRQAFKADSKPRQMGEGRELFALCKDGREIPVEIGLSTMLTEEGVQTVCSIIDISERK 477

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +E  L E+ E + +A+  K  F+  +S+ELR+PL +I+   D L  ++ G+L +KQ ++
Sbjct: 478 LSELRLREQAEQISRANRYKTEFLATMSHELRTPLNSILILADQLAENRQGNLTAKQVEH 537

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I+ S   LL L+NDILDL+ ++AG M LN   +++NDL+  ++Q+         +  
Sbjct: 538 ATIINRSGKDLLALINDILDLSKIEAGRMTLNREKVLVNDLITTLRQNFLPVAENRQLTF 597

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----------DNG 717
           +   +   G   + D  RL QI   +LSNA  F+  GS V L+  +              
Sbjct: 598 QTTKEDSAGDVLITDATRLFQILKNLLSNAFKFTDHGS-VHLRVYQPQSVPPGMDSLPQH 656

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +V + G  +P D    +F  F       + Q  G GLGLSI     +L GG + + 
Sbjct: 657 TLAMAVTDTGCGMPSDKLDRIFEAFEQLEQGSKRQFGGSGLGLSISRQLAHLLGGTIDVR 716

Query: 776 SSDEGVTTINCRIP 789
           S     +T    +P
Sbjct: 717 SELGLGSTFVLYLP 730



 Score = 42.6 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 2/139 (1%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             +  H   ++ +   A+   DQ  ++   N + V  +      L        L E  R 
Sbjct: 356 KKREEHFRAVIRSAPNAMLAVDQQGFITMSNPAAVRYFGYSPEELQGKTIEMLLPERFRK 415

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
            + +  Q      K       +      KD   +P    L  ++T      T+    +++
Sbjct: 416 HHPMLRQAFKADSKPRQMGEGRELFALCKDGREIPVEIGLSTMLTEE-GVQTVCSIIDIS 474

Query: 421 VQVDLETKYNTLVKVQGET 439
            +   E +     +     
Sbjct: 475 ERKLSELRLREQAEQISRA 493


>gi|170728964|ref|YP_001762990.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169814311|gb|ACA88895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 948

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 161/401 (40%), Gaps = 42/401 (10%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +   L  + +LE  +  +  +       L   +       +I+  N              
Sbjct: 254 VHTQLLQKKELEKSHRHIKNMTRV----LPVHLIYVDTKQKIQFINR--------HSLNW 301

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +  TC           +   I  +   E  +     + L+   L + I  +P
Sbjct: 302 LDCESNEVLNRTCEAIIPPKLFKLMAPFIEQTLKGETLTFDAEFQHLNSEELNFHITQVP 361

Query: 535 N--------------AQTMLTFVNVTDSVRAERALTEKNEALRKADE-------IKNSFV 573
           +                   T  N     +  + L   N AL +A E        K+ F+
Sbjct: 362 DIDADGKINGFFVCIEDQTQTRNNEKKIEKYAQDLEFNNWALDEAREEAEATGRAKSEFL 421

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  ++G   LL  ++   L+  Q  ++E    S+  LL L+NDILD + +
Sbjct: 422 ACMSHEIRTPMNGVLGMLSLLSRTE---LDQDQQHHLEIAQGSAKSLLTLINDILDFSKI 478

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFS 692
           ++G + L      L+  L+E+ Q +A +  E ++ + +     K  +   D  R+ Q+ +
Sbjct: 479 ESGKLNLESIEFNLHQTLDELIQPLAIRAQEKSLELTLDISQIKPANITGDPGRITQVLT 538

Query: 693 KILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            ++ NA+ F+ KGS ++   L A  +N    FS+++ G  + +D  +++F  F    +  
Sbjct: 539 NLIGNAIKFTPKGSIIVTGKLTAKNNNHRLTFSIQDTGIGMKQDKLENIFQAFSQADNST 598

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            R   G GLGLSI +   +L  G +S++S +   +     +
Sbjct: 599 TRHYGGTGLGLSIAKHLSHLMNGDISVTSKENIGSHFVVDL 639


>gi|85715377|ref|ZP_01046359.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697798|gb|EAQ35673.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 788

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 110/522 (21%), Positives = 212/522 (40%), Gaps = 49/522 (9%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL- 365
                L+     +  +D +R   F ++S   L  ++        S  +LL F   ++ + 
Sbjct: 248 RIDTALNRGRCGLWDWDLSRGRIFWSQSMFTLLGLE--------SRSDLLAFGEVSSLVN 299

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGG--TIWMFENL 419
            E ++     + + S               +G  + + V      N  GG   I +  ++
Sbjct: 300 SEDIDLFEIADELISGKIDHIDQSFRMRHSSGHWIWLRVRCELSQNASGGAHLIGIAVDV 359

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q  L  K         + I+ + E   ++  D R+ L N  F+ L K  ++ +  GT 
Sbjct: 360 TEQKSLAEKSVEADLRLRDAIESIPEAFVLWDADDRLVLCNSHFQRLHKLPDSAVVVGTP 419

Query: 480 IRNIAATCS--RYYNESDGWDLFAAIITSFD-----------DERKSLQGTLE------- 519
              +                    +   +FD            ER++  G          
Sbjct: 420 YETVVEVGRMPEIRARQPETGTVTSEAHTFDVQLADGNWLHISERRTKDGGYVSVGTDIT 479

Query: 520 ---------LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                    + +D  L  ++I L   Q  L    +  +  A++   +KN     A+  K+
Sbjct: 480 RIKEHEQKLVENDLRLRATVIDLKRTQATLERQALKLADLAQKYADQKNR-AEDANRAKS 538

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILD 629
            F+ ++S+ELR+PL  IIGF++++     G+L + K S+Y   I  S   LL ++ND+LD
Sbjct: 539 KFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSKKYSEYCRDILTSGQYLLEVINDVLD 598

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ ++AG M L+     L  +L+E  + ++ +  + ++   + ++  + S VADR+ + Q
Sbjct: 599 MSKIEAGRMNLDMEAFDLTGVLDESLRVVSGRTSDKSLTFDLRNNDGI-SIVADRRAVKQ 657

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-- 747
           I   +LSNA+ F+  G  ++ ++         ++ + G  I     + +   F       
Sbjct: 658 ILVNLLSNAIKFTPDGGRIMARSKIFENFITLTIADTGIGIASHALRKLGKPFEQVESQL 717

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                G GLGL+I +S +NLH G + + S     T +   +P
Sbjct: 718 TKTHAGSGLGLAIAKSLVNLHNGSMKLRSKPGVGTVVRVTLP 759



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 14/158 (8%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++ ++ ++         + + ++  A  ++D +  L   N  F  L ++  +
Sbjct: 353 IGIAVDVTEQKSLAEKSVEADLRLRDAIESIPEAFVLWDADDRLVLCNSHFQRLHKLPDS 412

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +      + ++E      ++PE    +     + S     E H     L +G  LH+  
Sbjct: 413 AVVVGTPYETVVEV----GRMPEIRARQPETGTVTS-----EAHTFDVQLADGNWLHISE 463

Query: 405 TSNPRGGTIWMFENLTVQVDLETKY-NTLVKVQGETID 441
                GG + +  ++T   + E K     ++++   ID
Sbjct: 464 RRTKDGGYVSVGTDITRIKEHEQKLVENDLRLRATVID 501



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 75/275 (27%), Gaps = 24/275 (8%)

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIP-QTDTDLL 113
              T +   ++ +   +       N     +WD       I         +  ++ +DLL
Sbjct: 230 WQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGRIFWSQSMFTLLGLESRSDLL 289

Query: 114 SFENWLKFHHYIKLSKA-TEKLRKEG------QSFDLVAETQN----DCAIKIEGRVSGS 162
           +F       +   +           G      QSF +   + +        ++    SG 
Sbjct: 290 AFGEVSSLVNSEDIDLFEIADELISGKIDHIDQSFRMRHSSGHWIWLRVRCELSQNASGG 349

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
              + I         LAE +++           +   +S+       D    ++  N  +
Sbjct: 350 AHLIGIAVDVTEQKSLAEKSVEADL------RLRDAIESIPEAFVLWDADDRLVLCNSHF 403

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF---CETVSTLEHGNNKSYKI 279
           ++    +       +G   +   E  +   I +   E            ++  +     I
Sbjct: 404 QRL--HKLPDSAVVVGTPYETVVEVGRMPEIRARQPETGTVTSEAHTFDVQLADGNWLHI 461

Query: 280 V-RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
             R     G   +  D+++      +L      L 
Sbjct: 462 SERRTKDGGYVSVGTDITRIKEHEQKLVENDLRLR 496


>gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
 gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
          Length = 960

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 86/381 (22%), Positives = 171/381 (44%), Gaps = 40/381 (10%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--------- 471
            + + E + N       + ID+++E +     +G +   N +F  L + E+         
Sbjct: 450 EETEKERQLN------QDIIDNVNEAIQFVDNEGHLLQFNQSFCQLIECEQKAQLKAPFS 503

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                  H+       + +YNE+   D  + +         S+   +      + +    
Sbjct: 504 MWFQALEHVVGGNEAVASFYNEALKQDNSSVL---------SMNYEIHTKQKRIFKVYAE 554

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+ +    +  + V   +  +           + +++K+  V  VS+ELR+PL++I+GFT
Sbjct: 555 PVYHGYNKVGTIFVHRDITKQ----------HEVEQMKSELVSTVSHELRTPLSSILGFT 604

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +L+   KL     KQ +Y++ I   +  L NL+ND LDL  +++G       ++ + DL+
Sbjct: 605 ELMLHRKLKP--EKQEKYLKTIHKEANRLTNLINDFLDLQRMESGGQMYTNESLDIRDLI 662

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +EV         ++ +    +++  +     D +R+ Q+ + I+SNA+ FS  G  +   
Sbjct: 663 SEVLTRFEAYSEKHTLHFINLAEKTI--IQGDSERIQQVITNIISNAIKFSPNGGDITTT 720

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769
            A ++     SVK++G  IPE+  K++F +F    N+ R +  G GLGL I +  +  H 
Sbjct: 721 LASNSTSLFVSVKDDGLGIPENEMKNLFRKFYRIDNSDRKKIGGTGLGLPICKEIVEAHN 780

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +S+ S +   +T    +P 
Sbjct: 781 GTISVESKENEGSTFIIELPL 801



 Score = 46.1 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 12/216 (5%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
              E E    ++ + E      +       S   L   F            +  ++  V+
Sbjct: 377 HLVEREVTDVERGLAEGVLTAYDLYIPIYSSGGELRAVFATNRVGKPFLQTEINELSGVM 436

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
           N    A   + + +E     QL    +I+ N+  AI   D   +L   N+SF +L E + 
Sbjct: 437 NHMSIAIEKVLMHEETEKERQLNQ--DIIDNVNEAIQFVDNEGHLLQFNQSFCQLIECEQ 494

Query: 344 AFLATNPSNDEL--LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                 P +     LE +   N+       +  K++  SV   +       H    +   
Sbjct: 495 KAQLKAPFSMWFQALEHVVGGNEAVASFYNEALKQDNSSVLSMNYEI----HTKQKRIFK 550

Query: 402 VIVTSNPRG----GTIWMFENLTVQVDLETKYNTLV 433
           V       G    GTI++  ++T Q ++E   + LV
Sbjct: 551 VYAEPVYHGYNKVGTIFVHRDITKQHEVEQMKSELV 586


>gi|220908923|ref|YP_002484234.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865534|gb|ACL45873.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 970

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 123/240 (51%), Gaps = 3/240 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +A   A++ K++F+ ++S+ELR+P+  IIG++++L          +    ++ I
Sbjct: 463 ELEHARQAAEAANQAKSTFLANMSHELRTPMNAIIGYSEMLIEEAADLEPEEFVPDLQKI 522

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL+L+NDILDL+ ++AG M L   T  L  LL+ V  +I   + +N+  ++V +
Sbjct: 523 QAAGKHLLSLINDILDLSKIEAGRMDLYLETFSLQSLLDGVIATIQPLLEKNSNTLEVKA 582

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              LGS  AD  ++ Q    +LSNA  F+ +G T+ L   R +    F V + G  +  D
Sbjct: 583 PTDLGSMHADLTKVRQSLFNLLSNACKFTDRG-TITLTVTRQDDAINFKVSDTGIGMTPD 641

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F        R   G GLGL+I   F  + GG++++ S+    TT    +P +
Sbjct: 642 QMARLFQPFTQADASTTRKYGGTGLGLTITNRFCQMMGGNITLESTPGVGTTFTVSLPLE 701


>gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1259

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 136/667 (20%), Positives = 249/667 (37%), Gaps = 91/667 (13%)

Query: 184  KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIG 238
            + K+   ++  ++ +  +    V   D       AN++Y         E  G      IG
Sbjct: 380  ERKQSEKYLQKYERIIAANSDAVCLVDCNYTYNLANLAYLNWYHKSLDEVLGNQVSNVIG 439

Query: 239  ESRKLFKEEIKKRMISSSALEKNFCET-VSTLEHGNNKSYKIVRVLNSF------GEAGI 291
            ES  LF++ +K +  +    E    E   +  ++   K   I             G    
Sbjct: 440  ES--LFEQVVKPKFEACLTGEIIQYERWFNDTDNSQRKFISITYTPYRELDHKITGIVVS 497

Query: 292  AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID------LAF 345
              D++      + L  T E L  +   I        +        E W  +         
Sbjct: 498  IRDLTALKLTEESLRQTEERLQLIASNIP-----GVMYTIVEELDETWTFEYLSEGCHEV 552

Query: 346  LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
            L     +             PE L        I     +  + +  + LP+GQ   ++  
Sbjct: 553  LGVEAKDAIANANQIMQRIHPEDLPKHNQAATISKQNLTPFSEEWRYILPSGQVRWILDN 612

Query: 406  SNP----RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            + P     G T+W  +  +++     E       +    T++            GRI   
Sbjct: 613  ARPKRRENGETVWHGVMLDISDGKQAEIALQESQERLYRTLEA-----------GRIICW 661

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG--- 516
                       +     G +I +     +   N       FA     F+D  ++++    
Sbjct: 662  -----EEDLISQEVSGWGKNIAD-----NWKANFWKYPLEFAPEGIYFEDRDRAVEAKEN 711

Query: 517  TLELLSDSVLEYSIIPLPN------------------AQTMLTFVNVTDSVRAERALTEK 558
             ++   +  +E+ +   P                    + +   ++++D   AE  L + 
Sbjct: 712  AIKTKGEFQVEHRLTGFPEKIWMLAKGKAVVNNDGEVTRVVGVAIDISDRKAAETELVKA 771

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             EA   A++ K+ F+ ++S+ELRSPL  I+GFT ++  +   +L ++Q   +  I  S  
Sbjct: 772  KEAAEVANQAKSIFLANMSHELRSPLNAILGFTQVI--NGSSNLTTQQQNNLNIIQRSGE 829

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL L+N+ILDL+ ++AG + L      L  L+ E++     K  + N+++ VI +  L 
Sbjct: 830  HLLGLINEILDLSKIEAGKIILIQEPFDLWKLIEELQDLFRIKASQKNLKLTVIINPNLP 889

Query: 679  SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------------DFIFSVK 724
             ++  DR +L QI   +LSNA+ F+ KG TV L+A                     F V 
Sbjct: 890  RYIQTDRVKLRQILINLLSNAIKFTQKG-TVCLEADLSETSPVCLIGTETLPVQLHFRVS 948

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I  D   ++F+ FV      Q ++G GLGL+I + +I L GG + + S     T 
Sbjct: 949  DTGVGIEPDEIDNLFSPFVQTQSGIQSQQGTGLGLAICKGYIKLFGGKIEVHSQPRVGTV 1008

Query: 784  INCRIPS 790
             +  +P+
Sbjct: 1009 FDLEMPA 1015



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 63/428 (14%), Positives = 132/428 (30%), Gaps = 40/428 (9%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           I  + G  + + +     ++L      F+  FD            G+    N S  + T 
Sbjct: 241 IKQIIGTATNINDRKQAEQRLQESEERFRRAFDDAAIGKALVSLEGNFFKVNQSLCELTG 300

Query: 228 TEGIVFQ----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV--- 280
              +       ++I   + L  +    + + +  +     E     ++G      +    
Sbjct: 301 YSEVELLSINFQSITFPQDLEIDLNYIKQLIAGEIRTYKMEKRYFHKNGEIVWVLLNGSL 360

Query: 281 ---RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                           D+S+       L     I+   + A+ + D N      N +++ 
Sbjct: 361 VRNEQQQPLYFIAQIQDISERKQSEKYLQKYERIIAANSDAVCLVDCNYTYNLANLAYLN 420

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLP--------EQLNWKTWKENIFSVYKSSETHK 389
            +   L  +  N  ++ + E L      P        E + ++ W  +  +  +   +  
Sbjct: 421 WYHKSLDEVLGNQVSNVIGESLFEQVVKPKFEACLTGEIIQYERWFNDTDNSQRKFISIT 480

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
            T +    + L   +T     G +    +LT     E       +       ++  GV  
Sbjct: 481 YTPY----RELDHKIT-----GIVVSIRDLTALKLTEESLRQTEERLQLIASNIP-GVMY 530

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII----- 504
              +   +     + S    E   +     I N      R + E       AA I     
Sbjct: 531 TIVEELDETWTFEYLSEGCHEVLGVEAKDAIANANQIMQRIHPEDLPKHNQAATISKQNL 590

Query: 505 TSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLT--FVNVTDSVRAERALTEKNE 560
           T F +E + +   G +  + D+          N +T+     ++++D  +AE AL E  E
Sbjct: 591 TPFSEEWRYILPSGQVRWILDNA---RPKRRENGETVWHGVMLDISDGKQAEIALQESQE 647

Query: 561 ALRKADEI 568
            L +  E 
Sbjct: 648 RLYRTLEA 655


>gi|295703077|ref|YP_003596152.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294800736|gb|ADF37802.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 957

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 158/369 (42%), Gaps = 21/369 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E++++ L+    + ++ + EG+ +    G I   N     L++ E         +     
Sbjct: 454 ESEHDRLL--SQDILNSIQEGMQLVDTSGTILQVNTKISELFQYEHQSGLLQLSLDQWLD 511

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFV 543
             S+          +   I   +   KS    L   S    +  YS       Q      
Sbjct: 512 ALSQKVENIGQLRQYVEAICKGEQVEKSFIYYLHTESKRKVIKVYSEYVYRKRQMFGVLF 571

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              D  +             + D++K+ FV  VS+ELR+PL +++GFT+L+    L    
Sbjct: 572 VHRDITK-----------EFEVDQMKSEFVSTVSHELRTPLASVLGFTELMLNKTLK--E 618

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y+  I   +  L +L+ND LD+  ++AG    +     +  L+ +V +    K+ 
Sbjct: 619 ERQKKYLTTIYQEAQRLTSLINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEV--QKIQ 676

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            +     +ISD +  + + D+ +LLQ+F+ ++SNA+ +S  G  V +K  +        +
Sbjct: 677 TSKHEFDMISDQEHFTVMGDKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDI 736

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP      +F +F    +    +  G GLGL+IV+  +  HGG +++ S  +  
Sbjct: 737 QDEGIGIPNKALGQLFTKFYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKG 796

Query: 782 TTINCRIPS 790
           TT    +P 
Sbjct: 797 TTFTVVLPL 805


>gi|170757594|ref|YP_001782071.1| putative phosphate regulon sensor protein [Clostridium botulinum B1
           str. Okra]
 gi|169122806|gb|ACA46642.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 569

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 167/396 (42%), Gaps = 37/396 (9%)

Query: 401 HVIVTSNPRGGTIW-MFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VI+ S    G +   F    ++     +E +           +  +  GV     + ++
Sbjct: 202 RVIINSEDEIGRLGRTFNAMADILENSLVEVRDKQ--NRLEAILKSMDSGVVAIDKEFKV 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP    L+  + + +  G ++ +            D    +  I   + ++R     
Sbjct: 260 IMINPYANKLFGIKRDII--GENLMDNIRDFELEKVLKDKEPGYKEIGILWPEKRTLRVK 317

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +++S            N  T+    ++TD  + E               ++  FV +V
Sbjct: 318 TTDIISK---------YDNIGTVAVVQDITDIKKLE--------------NMREQFVANV 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF++ LK          + ++++ I+  +  L  L+NDIL L+ ++  
Sbjct: 355 SHELKTPLTSIKGFSETLK---YVDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQ 411

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L    I LN+L+ +V   +     + NI+I ++ + K+   + ++ +  Q+   ++ 
Sbjct: 412 KQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGE-KIPLLIGNKDKYNQMIINLVD 470

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ ++     V +   +D G+ +F V++ G  I E+    +F RF        R   G 
Sbjct: 471 NAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGT 530

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    G + + S  +  T    +IP 
Sbjct: 531 GLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPL 566



 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSK--EI 299
           LF   I   MI      +     ++  +            +   G    A+ D+ +   +
Sbjct: 171 LFSSRISMAMIKPIKNLEFVTSRIARGDFDRRVIINSEDEIGRLGRTFNAMADILENSLV 230

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V D+      IL ++   +   D+   +   N    +L+ I    +      + L++ +
Sbjct: 231 EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPYANKLFGIKRDIIG-----ENLMDNI 285

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWM 415
           R         + +   + I  ++            P  +TL V    I++     GT+ +
Sbjct: 286 RDFELEKVLKDKEPGYKEIGILW------------PEKRTLRVKTTDIISKYDNIGTVAV 333

Query: 416 FENLTVQVDLE 426
            +++T    LE
Sbjct: 334 VQDITDIKKLE 344


>gi|240138362|ref|YP_002962834.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens
           AM1]
 gi|240008331|gb|ACS39557.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens
           AM1]
          Length = 1125

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 96/542 (17%), Positives = 186/542 (34%), Gaps = 49/542 (9%)

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQN-RYLQFHNRSF 335
               + G  GI +DV+  + +  ++  +     +L  A+ +     D +     + N  F
Sbjct: 293 EAGRTIGLFGILMDVTDRVQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRF 352

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS-------VYKSSETH 388
            + +          P     ++ L   +          W+    S           +   
Sbjct: 353 EDYYG---------PIGAARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQARDG 403

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID------- 441
              WH  +   +            I    ++   V          ++ G  ++       
Sbjct: 404 SYRWHKMSITPIRNAGDPAGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTF 463

Query: 442 --HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
             +L  G+ V  P+       P             +   H  ++    +R ++  D    
Sbjct: 464 DWNLRTGITVLSPESVRLYGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSR 523

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F A          +   TL            + L   +       +  +    RA T + 
Sbjct: 524 FIAEYRVGQRWLYTSGRTLYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAATVEA 583

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E        K+ F+  +S+E+R+PL  I+G+ DLL   +      ++   +E I  S   
Sbjct: 584 ERA---SAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRR--LELIRVSGES 638

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL +VND+LD++ ++AG ++L+     L  L+ +    +     ++ + ++   D  L +
Sbjct: 639 LLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPA 698

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----------GDFIFSVKNNGS 728
             V D  RL Q+   +L+NA+ F+  GS V L A  +               F + + G 
Sbjct: 699 SVVGDANRLRQVLFNLLNNAVKFTPAGSVV-LTARYEGSVPGADGGTAEALRFEISDTGI 757

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I       +F  F        RR  G GLGL+I    + + GG + + S +   +T   
Sbjct: 758 GIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWF 817

Query: 787 RI 788
            +
Sbjct: 818 TL 819


>gi|254254553|ref|ZP_04947870.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
 gi|124899198|gb|EAY71041.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
          Length = 1416

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 106/517 (20%), Positives = 195/517 (37%), Gaps = 32/517 (6%)

Query: 293  IDVSKEITVN-DQLTHTYEILHNL--TVAIA-IF-DQNRYLQFHNRSFVELWEIDLAFLA 347
            I V+ E+    ++     + L NL  +  IA IF D+   ++    + V L+ +    + 
Sbjct: 763  ITVNAELQAKVEETAKANDDLQNLIASTGIATIFMDRGMRVKRFTPAAVGLFNLIATDVG 822

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                   LL+     +      +     E++  + +   +    W+L   + L    + +
Sbjct: 823  -----RSLLDITHRLDYPELAADAVATFESLRLIEREVPSSDGNWYLA--RLLPYRTSDD 875

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSL 466
               G +    ++T +   E K            +  S   + V   DG I   N     +
Sbjct: 876  RIDGAVLTLTDITERRRAEAKLRANEARLRLAAESTSNFAIIVQNMDGTIVTWNKGAERV 935

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ---------GT 517
            +   E+ +  G  I  I     R +   +     A  +   DDER  L+         G 
Sbjct: 936  FGYSEDEV-IGRPIDMIYLPEDRSHGAVEREQ--AQRLGRSDDERWYLRKDGEKIYCGGE 992

Query: 518  LELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++D   + ++ I     +         D +  ER++ EK E   +A+ IK+ F   +
Sbjct: 993  VTFINDDTFKGFAKIARDLTERKSIEKRQFDQLATERSMREKTE---EANRIKDEFFAVL 1049

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+EL++PL  I    +LL  +            V  I  S      +++D+LD++    G
Sbjct: 1050 SHELKNPLNLIHVKAELLSLAPETRELDVVRDAVNAIQRSVMSQAKIIDDLLDMSRARTG 1109

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             + L+     L  LL  +  +         I + +          AD  R+ QI   +LS
Sbjct: 1110 KLTLDRVPTDLAALLRTLVDACRRDATSRGISVTLDGASAPVVVEADPVRVEQILWNLLS 1169

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
            NA+ F+  G TV L  AR+       V + G+ I  D    +F+ F   +        G+
Sbjct: 1170 NALKFTPAGGTVTLTLAREGDGARVDVADTGNGIAPDFLPKIFDMFSQASVPRSRSTHGL 1229

Query: 755  GLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            G+GLS+V+    +HGG +   S      +     +P+
Sbjct: 1230 GIGLSLVKHLAEMHGGRIEAHSDGIGHGSRFRLWLPA 1266


>gi|84622292|ref|YP_449664.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366232|dbj|BAE67390.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 631

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 96/496 (19%), Positives = 190/496 (38%), Gaps = 49/496 (9%)

Query: 320 AIFDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            +FD  + + +     N +F     +    L  +  +            LPE    + W 
Sbjct: 1   MVFDGEQAVDYLIRTTNGAFERYTGLSTNALNISIRD-----------LLPEHE--QEWF 47

Query: 376 ENIFSVYKSS-ETHKDTWHLPNGQTLHV---IVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +    V ++    H +       +   V    V    +G    +F ++T +  +E +   
Sbjct: 48  DRYGLVARTGNRIHFEMQAKALKRWYSVDAFRVGRPDQGRVAVLFMDITERKRVERELAE 107

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
                    D L   V V    G ++  N A+   +  + +  +         +  S   
Sbjct: 108 SEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGT--------VSAWSELL 159

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVNVTDS 548
           +  D       +  S  ++R           D     +E +  P  +A      +  +  
Sbjct: 160 HPDDLPTFQFELAASLQEQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSP 219

Query: 549 VRAE-RALTEKNEALRKADE-----------IKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              E R +    E L +++            +K+ F+  +S+ELR+PLT I+G+++LL  
Sbjct: 220 DVTEQREIELAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQ 279

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  +   + +  I++S+     L++D+LDL+++  G ++L   ++ L + + E   
Sbjct: 280 RVEEGHTT--YKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALN 337

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +        +  +K+         + D  RL Q+   +LSNA+ F+     + +   RD+
Sbjct: 338 TQELAAEGKDQILKLHVPPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDD 397

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G  + SV ++G  I  +    +F RF        R   G+GLGL+IV+  + +HGG V  
Sbjct: 398 GHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGA 457

Query: 775 SSSD-EGVTTINCRIP 789
           +S       T   R+P
Sbjct: 458 TSGGRGKGATFTVRLP 473



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 22/166 (13%)

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           GR       +  + +        E     ++L+   + F  L D L   VW  D  G + 
Sbjct: 81  GRPDQGRVAVLFMDIT-------ERKRVERELAESEARFSALADGLPMPVWVLDAQGVVR 133

Query: 217 WANISYKK------NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
           + N +Y +      ++ T     +    +    F+ E+   +     L            
Sbjct: 134 FVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRH--- 190

Query: 271 HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYE 310
            G  +  ++             G AG + DV+++  +        E
Sbjct: 191 DGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 236



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 75/237 (31%), Gaps = 28/237 (11%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N ++++ T         +I +     ++E   R    +         +        + Y 
Sbjct: 17  NGAFERYTGLSTNALNISIRDLLPEHEQEWFDRYGLVARTGNRIHFEMQA--KALKRWYS 74

Query: 279 I----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQF 330
           +    V   +    A + +D+++   V  +L  +      L   +     + D    ++F
Sbjct: 75  VDAFRVGRPDQGRVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRF 134

Query: 331 HNRSFVELWEIDL------AFLATNPSNDELLEFLRSANKLPEQLNWKTW--KENIFSVY 382
            N ++ E + +D+      A+      +D        A  L EQ   +           +
Sbjct: 135 VNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDGQW 194

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +  E      +  +G+ +          G      ++T Q ++E     L++ +   
Sbjct: 195 RWIEMTATPRYSADGRFI----------GLAGSSPDVTEQREIELAREQLLESERSA 241


>gi|75907391|ref|YP_321687.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75701116|gb|ABA20792.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 676

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 165/387 (42%), Gaps = 41/387 (10%)

Query: 411 GTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G   + +++     LE    N L + Q      L+  +        + ++          
Sbjct: 323 GFTLVIDDIEQAYALEECLVNFLRENQVRA--KLAAPIIFEDKLWGLLIA----HQCHSP 376

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            +   S    + +IA   +   ++S+       ++ S  D    L      L   V+E +
Sbjct: 377 RQWNDSDKNLLISIAEQLAIAIHQSE-------LMRSLQDAAHRLTQEKHTLEQRVIERT 429

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +                       AL +   A   A  +++ F+  +S+EL +PLT +IG
Sbjct: 430 M-----------------------ALRDALLAAEAASRLRSEFLATISHELLTPLTYVIG 466

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +  L    LG L+ +Q  Y++ I  S   LL+++NDILDL+ ++AG   LN +   L  
Sbjct: 467 MSSTLLRWPLGELSQRQRDYLQTIHDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLIK 526

Query: 650 LLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +     +S+  K    + N+++ +  D +   F AD  R+ QI   +L+NA+ F+ +G  
Sbjct: 527 VAENTIESLVEKALSEKVNLKLDLQIDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGN 586

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           V L+   +    IF V++ G  IPE+    +F +F       R +  G GLGL++ +  +
Sbjct: 587 VTLRVWVEEDTSIFQVEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLV 646

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            LH G + + S+    +     IP +E
Sbjct: 647 ELHRGRIEVESTVGIGSIFTVWIPYQE 673


>gi|325923655|ref|ZP_08185280.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325545854|gb|EGD17083.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 664

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 98/510 (19%), Positives = 195/510 (38%), Gaps = 50/510 (9%)

Query: 308 TYEILHNLTVAIAI----FDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFL 359
            +EI HN+     +    FD ++ + +     N +F     +      TN  N  +   L
Sbjct: 19  YHEIFHNVDAGFCVIDMVFDGDKAVDYVIRSTNGAFERYTGL------TNAVNVSVRGML 72

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
               +          +      ++        W+  +       V    +     +F ++
Sbjct: 73  AEHEQEWFDRYGHVARTGNRIHFEMQAKALRRWYSVD----AFRVGQPQQARVAVLFMDI 128

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T +  +E +            D L   V V    G ++  N A+   +  + +  +    
Sbjct: 129 TERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGIDISSGT---- 184

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNA 536
                +  S   +  D       +  S +++R           D     +E +  P  +A
Sbjct: 185 ----VSAWSELLHPDDLSIFQFELAASLEEQRALHALVRARRHDGQWRWIEMAATPRYSA 240

Query: 537 QTMLTFVNVTDSVRAE-RALTEKNEALRKADEI-----------KNSFVQHVSYELRSPL 584
                 +  +     E R +    E L +++             K+ F+  +S+ELR+PL
Sbjct: 241 DGRFIGLAGSSPDVTEQREIELAREQLLESERTARNEAESMARFKDEFLATLSHELRTPL 300

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           T I+G+++LL       +   Q  Y  +  I++S+     L++D+LDL+++  G ++L  
Sbjct: 301 TTILGWSELLLQR----VEEGQPTYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEV 356

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            ++ L + ++E   +        +  ++V         + D  RL Q+   +LSNA+ F+
Sbjct: 357 ESLDLAEQVHEALTTQELAAEGKDQILEVHVPDTPCLVLGDATRLQQVLWNLLSNAIKFT 416

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
                + +   RD+G  + SV+++G  I  +    +F RF        R   G+GLGL+I
Sbjct: 417 PAHGRIDVTIERDDGHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAI 476

Query: 761 VESFINLHGGHVSISSSD-EGVTTINCRIP 789
           V+  + +HGG V  +S       T   R+P
Sbjct: 477 VQQLVEMHGGQVGATSGGRGKGATFTVRLP 506



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 18/161 (11%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +      ++ T  
Sbjct: 127 DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGIDISSGTVS 186

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +    +   +F+ E+   +    AL             G  +  ++           
Sbjct: 187 AWSELLHPDDLSIFQFELAASLEEQRALHALVRARRH---DGQWRWIEMAATPRYSADGR 243

Query: 285 SFGEAGIAIDVSKEITV---NDQLTHTYEILHNLTVAIAIF 322
             G AG + DV+++  +    +QL  +     N   ++A F
Sbjct: 244 FIGLAGSSPDVTEQREIELAREQLLESERTARNEAESMARF 284



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 79/249 (31%), Gaps = 31/249 (12%)

Query: 210 DQAGDILWA----NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
           D    + +     N ++++ T     V     G   +  +E   +               
Sbjct: 38  DGDKAVDYVIRSTNGAFERYTGLTNAVNVSVRGMLAEHEQEWFDR---YGHVARTGNRIH 94

Query: 266 VSTLEHGNNKSYKIVRV-LNSFGEAGIAI---DVSKEITVNDQLTHTYEILHNLTVAIA- 320
                    + Y +    +    +A +A+   D+++   V  +L  +      L   +  
Sbjct: 95  FEMQAKALRRWYSVDAFRVGQPQQARVAVLFMDITERKRVERELAESEARFSALADGLPM 154

Query: 321 ---IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
              + D    ++F N ++ E + ID+    ++ +     E L   +    Q       E 
Sbjct: 155 PVWVLDAQGVVRFVNSAYGEFFGIDI----SSGTVSAWSELLHPDDLSIFQFELAASLEE 210

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYN 430
             +++      +      +GQ   + + + PR        G      ++T Q ++E    
Sbjct: 211 QRALHALVRARRH-----DGQWRWIEMAATPRYSADGRFIGLAGSSPDVTEQREIELARE 265

Query: 431 TLVKVQGET 439
            L++ +   
Sbjct: 266 QLLESERTA 274


>gi|297531667|ref|YP_003672942.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297254919|gb|ADI28365.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 609

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 161/386 (41%), Gaps = 28/386 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + H+++GV      GR+ L N A  ++  
Sbjct: 238 GQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLE 527
                +   + I ++     +Y  E+   +  + I+  S D+E   L+ +L         
Sbjct: 298 VSRETVLS-SSIVDVLGIADQYTFETLLEERDSLILDFSTDEELYILRASL--------- 347

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S+I           V + D    E           K D  +  FV +VS+ELR+PLT +
Sbjct: 348 -SVIQKEGGFVNGLIVVLHDITEQE-----------KIDRERRQFVANVSHELRTPLTTM 395

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + + L        +    ++++ +   +  ++ LVND+L L+ +D+   KL  + I  
Sbjct: 396 KSYLEALADGAWQDKDI-APRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWINF 454

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +   ++V          +NIR       +      D  ++ Q+   I+SNA+ +S +G T
Sbjct: 455 SAYFHKVIDRFE-LTKSDNIRFVRKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGGT 513

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           +  +  + + + I SV + G  IP+     +F RF        R   G GLGL+I +  +
Sbjct: 514 ITFRVRKLSDEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKEVV 573

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
             HGG +   S +   TTI   +P +
Sbjct: 574 LAHGGTIWAESKEHKGTTIYFTLPLE 599



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N + + +  +    + ++   D L
Sbjct: 253 EAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIVDVL 312

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                    + +Q  ++T  E   S+     T ++ + L    ++ +        G I +
Sbjct: 313 G--------IADQYTFETLLEERDSLILDFSTDEELYILRASLSV-IQKEGGFVNGLIVV 363

Query: 416 FENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEG 446
             ++T Q  +D E +           T +      ++ L++G
Sbjct: 364 LHDITEQEKIDRERRQFVANVSHELRTPLTTMKSYLEALADG 405


>gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii NCTC
           11218]
          Length = 807

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +       A+  K+ F+ ++S+E+R+P+ +I+G + LL TS   +L+ +Q  ++  I
Sbjct: 457 ALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTS---NLSEEQRNHLITI 513

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+L+NDILD++ +DAG + +      L  L+ +V      K  ++ +++ +  
Sbjct: 514 DKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDL 573

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF---IFSVKNNGSS 729
           D  L   + D  R+ QI    +SNA+ F+ +G  T+ ++ A  +        SV++NG  
Sbjct: 574 DKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIG 633

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  D    VF  F        R   G GLGL+I +   +L GG V + S     +T    
Sbjct: 634 LSADDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVESRLGDGSTFWLT 693

Query: 788 I 788
           +
Sbjct: 694 L 694


>gi|225174413|ref|ZP_03728412.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170198|gb|EEG78993.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 558

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 4/243 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L   N+ L +   +K+ F+  +++ELR+PLT+I+ F +LL     G +N +Q + +  
Sbjct: 310 KSLAVLNQKLSENSRLKSEFMATMTHELRTPLTSIVAFCELLLDEIPGPINEEQQENLMD 369

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  L+ L+NDILD+A  +AG ++L+   + LND+   V++++++  ++N +R+ V 
Sbjct: 370 IKTSAQQLMLLINDILDMAKFEAGHLRLDKENVDLNDVFRAVRRTMSSIAYQNGVRLDVS 429

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L     D +RL Q+ S +++NA+  S +G  V + A  DN     SV++NG  IP 
Sbjct: 430 A-VDLPLVYGDPERLRQMLSNLIANAVKHSKEGGYVHIYAKADNEFAAISVEDNGDGIPP 488

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP- 789
           ++   +F +F         +R G GLGL++V++   L  G++S++S     TT    IP 
Sbjct: 489 ELMPHIFEKFRQGEDSLKRRRNGTGLGLALVKTLAELQDGNISVNSEVGEGTTFTIHIPF 548

Query: 790 SKE 792
           +K+
Sbjct: 549 AKQ 551


>gi|56752287|ref|YP_172988.1| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 937

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 9/320 (2%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+       +   +      L   I TS  DE   L      ++ ++ E  ++ L 
Sbjct: 349 GWAAHLGMRIEQLAHAADAMASGQLQQQIPTSGRDELTVLAQAFNRMAVTLREL-LVSLE 407

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +     T      + R E+A     E    A++ K++F+ ++S+ELR+PL  IIG+++++
Sbjct: 408 HRVQERTAALRETNDRLEQA----REQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMM 463

Query: 595 KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                  +   +       I+ +   LL L+N ILDL+ ++AG M+L   +  L +L+N 
Sbjct: 464 MEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELING 523

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           VK  I   + +N  ++ V     +G   AD  +L Q    +LSNA  F+ +G T+ L+ A
Sbjct: 524 VKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVA 582

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                 +F V ++G  +  +    +F  F        R   G GLGLSI   FI + GG 
Sbjct: 583 AQGDQVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGK 642

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S     +T    +P +
Sbjct: 643 ITVESVLGEGSTFTITLPRQ 662


>gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
 gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
          Length = 822

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 11/234 (4%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+ ++S+E+R+PL  I+GF  LL+T+    LN +Q +++  +  SS  LLN+VND
Sbjct: 317 RAKDLFLANMSHEIRTPLNGIVGFIQLLETT---PLNEEQREFIRVVQESSQNLLNIVND 373

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
           ILD + ++AG ++L        D      ++ A K     I   V  D  L    + D  
Sbjct: 374 ILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALHKGIDFAVYVDPALPGRILGDPT 433

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFN 740
           R+ Q+   +++NA+ F+ +G  V +   +           F V + G  I  D  + +F+
Sbjct: 434 RISQVLVNLVNNAIKFTERGGEVSVFCQKMGELEGNVFVKFVVSDTGIGIALDQQEKIFD 493

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            F        R   G GLGLSI    +   GG +++ S     ++    +P K+
Sbjct: 494 LFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLAVESEPGKGSSFFFTLPLKK 547


>gi|299537174|ref|ZP_07050477.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
 gi|298727415|gb|EFI67987.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
          Length = 914

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 166/374 (44%), Gaps = 20/374 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++ +  +      +    ID+++EG+ +    G   L N A   +              
Sbjct: 440 ERILMYEEVEKSRTLNQTIIDNVNEGIQLVSVTGDTILINRALCGIVNFFNLTTETSIPK 499

Query: 481 RNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +      +   + D    F  A+I+ SF+D RK  +  +    +  +E     L + Q 
Sbjct: 500 EDWLQHFQKCSAQPDELIEFLEASIMESFEDTRK-YRYCMTAEHEIFVEVYATCLFDGQE 558

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +  + V   +  E           + D++K+  V  VS+ELR+PL++++GFT+LL T  
Sbjct: 559 KVGTIFVHRDITRE----------YEVDQMKSELVSTVSHELRTPLSSVLGFTELLLTKN 608

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +     +Q++Y++ I   +  L NL+ND LDL  +++G  + N  T+ LN++  E+    
Sbjct: 609 IKP--ERQNKYIDTIHREAVRLTNLINDFLDLQRMESGKQQYNMETLQLNEIAFEIVNRF 666

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               HE    + +I   +     AD+ RL+Q+F  ++ NA+ FS +G  V +     N  
Sbjct: 667 R---HEQKHNVHLIDKAREVYVNADQDRLVQLFINLIGNAIKFSPQGGDVEILLENKNNS 723

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
              S+K+ G  I +     +F +F    +    +  G GLGLSI    I  H G + I S
Sbjct: 724 IQVSIKDEGIGISKQDIAQLFQKFKRIDNSLRRKIGGTGLGLSICREIILKHEGEIWIES 783

Query: 777 SDEGVTTINCRIPS 790
            +   TT+   +P 
Sbjct: 784 EEGQGTTVYFTLPL 797


>gi|242280815|ref|YP_002992944.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123709|gb|ACS81405.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 568

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 120/236 (50%), Gaps = 7/236 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+      A ++K  F+ ++S+E+R+P+ +I+G  +LLK +   +++ +Q +++    
Sbjct: 331 LQEEKAKAETASKVKTEFLANMSHEIRTPMHSILGMVELLKET---NVDEEQREFLNIAG 387

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL ++ND+L+++ ++AG +++     +L +++  V    A       +++    D
Sbjct: 388 TAGESLLEIINDVLEISKIEAGHLQIERHEFLLREMVERVVSVFALDAARKGLKLVCHID 447

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +    V D  R+ Q+ + ++SNA+ F+S+G T+++    +    IF+VK+ G  I  D
Sbjct: 448 ENVPDKVVGDATRIRQVLNNLISNAVKFTSEG-TIVVSIYWEAEKLIFAVKDEGIGIAAD 506

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               +F  F        R   G GLGL I    +++ GG + + SS    TT    
Sbjct: 507 KINYIFESFTQADSSTSRKYGGTGLGLPISRKLVSMMGGEIFVCSSVGEGTTFRFY 562


>gi|259047883|ref|ZP_05738284.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
 gi|259035560|gb|EEW36815.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
          Length = 618

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 174/416 (41%), Gaps = 34/416 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQG--ETI 440
           +E  + T  +  G  T  V++  +   G +     +L+V++  E +  T  + Q     +
Sbjct: 213 AEMKQQTEQIAEGNYTGEVMIYGDDELGQLGQAINDLSVKIK-EAQEGTEAERQRLDSVL 271

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            H+S+GV      GRI + N A   +      R+     +  +    S  + +       
Sbjct: 272 RHMSDGVIATDRRGRIVIINAAALDVLNLRNERIIGTPLLEVLRLDHSVSFRDLLESQEE 331

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             I    D E   +Q           E S+I   +         +TD    E        
Sbjct: 332 RMITIEEDGEETIVQC----------EISVIQRESGFISGLVCVLTDVTEQE-------- 373

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              K D  + +FV +VS+ELR+PLT+I  +T+ L      +      +++  I   +  +
Sbjct: 374 ---KIDRERRNFVSNVSHELRTPLTSIKSYTEALVDGAWEN-KEIAPEFLNVIETETDRM 429

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI-----ATKMHENNIRIKVISDG 675
           + ++ D+L+L+ +D   ++L+   + +N+L+  +         + +  E N RI      
Sbjct: 430 MRMITDLLNLSRMDQNRLELDKEFVNMNELVKHIVNRFDMVLQSDQYREKNYRILTDITQ 489

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      D+ ++ Q+   I++NA+ +S  G  +I++    + D I SV + G  +P    
Sbjct: 490 RNLWVEIDQDKMTQVLDNIINNAIKYSPDGGRIIVRLMETHTDLIVSVSDEGLGVPRKDI 549

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF        R   G GLGL+I +  + LHGG + ++S +   +T    +P
Sbjct: 550 PHLFDRFYRVDKARSRAMGGSGLGLAISKEVVQLHGGKIWVNSIENKGSTFFISLP 605



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 56/153 (36%), Gaps = 15/153 (9%)

Query: 284 NSFGEAGIAIDV------SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  G+ G AI+         +     +      +L +++  +   D+   +   N + ++
Sbjct: 237 DELGQLGQAINDLSVKIKEAQEGTEAERQRLDSVLRHMSDGVIATDRRGRIVIINAAALD 296

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           +  +    +   P    LLE LR  + +  +   ++ +E + ++ +  E       +   
Sbjct: 297 VLNLRNERIIGTP----LLEVLRLDHSVSFRDLLESQEERMITIEEDGEETIVQCEISV- 351

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
               +   S    G + +  ++T Q  ++ +  
Sbjct: 352 ----IQRESGFISGLVCVLTDVTEQEKIDRERR 380


>gi|189425738|ref|YP_001952915.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421997|gb|ACD96395.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 827

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 144/328 (43%), Gaps = 19/328 (5%)

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSII 531
                 HI N  +  +         DL   I +   D+E   L  ++ +  +  L+    
Sbjct: 355 FFYVHYHIINPLSQLTSAIRRLASKDLTIEIPSVESDNEIGELAASVHVFRNMALQI--- 411

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              +   +           +   LT    A   A++ K+ F+ ++S+E+R+P+  +IG  
Sbjct: 412 ---DNDMLTMQHLQNKLHESLELLTTARNAADAANQNKSEFLANMSHEIRNPMNGVIGML 468

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+      L  +Q  Y+  I  S+  LL ++NDILDL+ ++AG ++L  S   L   +
Sbjct: 469 QLLR---FTELTDEQKDYLSAIETSADDLLAIINDILDLSKIEAGKIELEISRFSLRRCI 525

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           N+V     ++  E  ++++   D +L      D+ R+ Q+   +L NA+ F+ +G T+ +
Sbjct: 526 NDVLLMQTSRAFEKGVQVEARLDEQLPLEVYGDQLRVKQVLLNLLGNAVKFTEEG-TISI 584

Query: 711 KAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
           +A       DN     +V + G  +  ++   VF+ F+        +  G GLGL+I   
Sbjct: 585 EARLLQKQDDNSIVQITVSDTGIGMSPEVLGKVFDPFIQADVCTTRRFGGTGLGLTICRQ 644

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
              L GG +S +S +   +     +P +
Sbjct: 645 LAELMGGRISATSEEGKGSQFYLELPFR 672


>gi|119486747|ref|ZP_01620722.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Lyngbya sp. PCC 8106]
 gi|119456040|gb|EAW37173.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Lyngbya sp. PCC 8106]
          Length = 1471

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 116/598 (19%), Positives = 228/598 (38%), Gaps = 76/598 (12%)

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
            +A+ E  + F EE +       A  +    T   L+  N + Y +         A   + 
Sbjct: 665  QAVVEELETFNEEQQATNEELLASNEELQSTNEELQSANEELYTV--------NAEYQLK 716

Query: 295  VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            + +   + D       +L +  + +   D N  ++    +  +   I  + +     N  
Sbjct: 717  IEQLTQLTD---DEDNLLRSTNLGVLFLDLNLNIRRFTPAATQAINIRPSDV-----NRS 768

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVT-----SNP 408
            L +F  +       L+     E +  V  + E  +    L   G+ L + +       N 
Sbjct: 769  LFDFTNN-------LDCPNLLEVLQQVLATEEAQEKEVTLSTTGEQLLMRMNCYLREENS 821

Query: 409  RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF----- 463
              G +  F N+     ++ +      +          G+ +   + +    NP       
Sbjct: 822  CDGIVITFVNINQIKKVQQRLENTNNLLENLNLSSPVGLFIVDSNLQFLRVNPRLAEMNN 881

Query: 464  --------------------RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
                                  L    ++ L  G  +RNI          +D       +
Sbjct: 882  RSVEDYLGKRLSEVIPQLADEQLMPVYQHVLGTGEPVRNIEVQGRE---STDPQTQSYWL 938

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEAL 562
            +T +  E        + +   +++ +              ++ + VR   + L E  +  
Sbjct: 939  VTYYSVE---WDHGEQAIGGIIVDITARKQAELALDQLNQSLEERVRHRTQELEEAKQKA 995

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              A+  K+ F+  V++ELRSPL  I+GFT LL+     +L+S+Q Q V  I  +   LL 
Sbjct: 996  ETANNAKSQFLSRVTHELRSPLNIILGFTQLLER--CDNLDSQQQQQVNLIFNNGQQLLK 1053

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
            L+N++LDL  V+A  M+LN     L  L++E+++    ++    +  +V  D ++     
Sbjct: 1054 LINELLDLGKVEANRMELNVEWFDLYCLMDELQEMFKLEIQRKGLEFRVNLDSQVPQQIQ 1113

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------DFIFSVKNNGSSIP 731
             D+ +L Q+   +++NA+ F+  G  + L+   D+              F V++ G  IP
Sbjct: 1114 TDKTKLRQVLINLITNAIKFTDVG-QICLRVNVDSTLSNQNEDQSLKLRFEVEDTGRGIP 1172

Query: 732  EDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F  FV   + R  ++G GLGL+I   F+ + GG + ++S+    T I+  I
Sbjct: 1173 PEELDRLFEPFVQGKSGRNSQQGTGLGLAICRYFVEMMGGEIGVNSTLGAGTRIHFSI 1230


>gi|83644997|ref|YP_433432.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83633040|gb|ABC29007.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 905

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 98/383 (25%), Positives = 158/383 (41%), Gaps = 23/383 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G     E L  +   E K++   +      +H  +G+     +G I   NPA  +L+   
Sbjct: 541 GRTLALEALVSERTAELKHSE--QRLRAIYEHTPDGMLTVTEEGNITAVNPAVENLFG-Y 597

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                 G +IR +         ES    +      + +     LQG      D  LE   
Sbjct: 598 ACSNLAGLNIRVLIPDYQASTVESSQESV------ALNTGPGYLQGLRRNGQDFPLELQT 651

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + L  +QT             ERA         +A+ IK+ F+  +S+ELR+PLT I G 
Sbjct: 652 VCL--SQTTPASYLCIVRDVTERA---------EAERIKDEFISTISHELRTPLTAINGS 700

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL      +   KQ+Q +     ++  LLNLVN ILDL  + +G M L  S   L  L
Sbjct: 701 LALLDAKVAMAAPDKQAQMIGIARRNTDRLLNLVNAILDLKKMASGEMTLQLSHFNLAQL 760

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++V        H  ++   +         V AD +RL Q+ + ++SNA  FS   + ++
Sbjct: 761 VSDVLALNQGLAHNADVSFSLQIPSDCVIVVEADEERLTQVLTNLISNAAKFSPPHTEIV 820

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           +    ++     SV + G  +P +    +F RF        R   G GLGL+I ++ I  
Sbjct: 821 VSVTLEDSIARVSVTDKGPGVPPEFLNRIFGRFAQADSSNTRNKSGTGLGLNISKAIIER 880

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           HGG +   ++  G  T    +P+
Sbjct: 881 HGGKIGFHNNPGGGCTFYFELPA 903


>gi|309790727|ref|ZP_07685276.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227218|gb|EFO80897.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 1050

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 101/450 (22%), Positives = 182/450 (40%), Gaps = 36/450 (8%)

Query: 350 PSNDELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQTLHVIVTS 406
           P   +L +   ++S+  +P  L+       +  + ++++ T   TW + + Q L      
Sbjct: 339 PEFQQLFDRNGIQSSLMIPILLD-----GEMHGLIQANDCTQPRTWGMGSIQLLRTAAEM 393

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                  W         +                D + +   +   DG I   +    + 
Sbjct: 394 MATAQRGW---------EARQALAVSEAQLRALRDAMPDMFFIMRRDGMIIDYHCPASAQ 444

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
              + +       +  +    S+    +        +I +F+         L +  +   
Sbjct: 445 LFIQPSAFLGQNVVDVLPPDVSQPALTALDQVSTGKVIATFE-------YCLSMEEERNF 497

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E  ++ +   + M+   ++T    AERAL +  EA   AD  K++F+ H+S+E+R+PLT 
Sbjct: 498 EARVVHIVADRYMVLVRDITQQKVAERALVQAKEAAETADRAKSTFLAHISHEIRTPLTA 557

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG + LL  S    LN +Q +  + I+A    LL+L+ DILD++ ++AG + L      
Sbjct: 558 IIGMSSLLLES---PLNPEQYENAQIINAGGKTLLSLIGDILDVSKIEAGQLDLVMQPFD 614

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  +       +    H+  +R+ +     L  S + D  RL Q+   +L NA+ F+ +G
Sbjct: 615 LRAVCRLALDLVQQSAHDKRLRLNLQITPDLPASLIGDSGRLRQVLVNLLFNAVKFTEQG 674

Query: 706 STVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
             V L         +       V + G  IP D  + +F  FV   H    Q  G GLGL
Sbjct: 675 -VVELIVRGHFQAEERYHVEIIVHDTGVGIPADQIEQIFKPFVQIDHHMTEQTPGSGLGL 733

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I +  + L GG + +SS+    TT    I
Sbjct: 734 TISQQLVELMGGTLEVSSTLGVGTTFTLTI 763


>gi|289435295|ref|YP_003465167.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171539|emb|CBH28085.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 596

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 167/402 (41%), Gaps = 36/402 (8%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSIDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +    A  +   +  +  +     IT             
Sbjct: 281 SNPPAEEFLHNWFFSPENAEKVLIPVALDNLLNDTLEAKESQVGEIT------------- 327

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +D      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 328 --FADRTYVAILTLLYTGEHVRSIVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 435 QMDNQKLPLAPLLEKVMANFDVLAKENFVELGLELETPNLEYSYDPDRMEQVLINLIMNA 494

Query: 699 MDFS-SKG--STVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  +  +G    V+LK      N   I +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYQGKVVLKQTIDETNNKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G G+GL+IV++ +  HGG +S+ S     +     +P ++
Sbjct: 555 AVGTGIGLAIVKNIVEAHGGKISVKSELGKGSDFIITLPLEK 596


>gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus 10329]
          Length = 873

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 162/368 (44%), Gaps = 16/368 (4%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +  +    E  +H  + + +  PDG I   N AF  L +     +   +          
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSP----GELLQ 289

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFV 543
               +++   L +  + S    R  +    +      +E  + P+ +      + +    
Sbjct: 290 GEDTDANTVALLSQSVRSHSPVRVEILNYTKSRRPYWVELELSPVFDENGELLRFIAVER 349

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    E+ L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L  ++     
Sbjct: 350 DITDRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP 409

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +  +  S+  L+ ++NDILD + V+AG + L      L  L+       A +  
Sbjct: 410 ---RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQAD 466

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           + N+++ V     + +  V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FS
Sbjct: 467 KKNLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESEHGFDFS 525

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S    
Sbjct: 526 VSDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGK 585

Query: 781 VTTINCRI 788
            +  +  +
Sbjct: 586 GSCFSFSL 593



 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            SL    ++L +     ++LS  IS    + +     +      G I W N ++++ TE 
Sbjct: 215 RSLAQAQNKLQQEHQTQQQLSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEY 274

Query: 229 EGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLE----HGNNKSYKIVRVL 283
                ++ +G+S  +L + E       +   +     +   +E      + + Y +   L
Sbjct: 275 ---SLEEVVGKSPGELLQGEDTDANTVALLSQSVRSHSPVRVEILNYTKSRRPYWVELEL 331

Query: 284 NSFGE--------AGIAIDVSKEITVNDQLTHTYE 310
           +   +          +  D++    +  +L+   +
Sbjct: 332 SPVFDENGELLRFIAVERDITDRREMEKRLSSALD 366


>gi|313674161|ref|YP_004052157.1| pas/pac sensor signal transduction histidine kinase [Marivirga
           tractuosa DSM 4126]
 gi|312940859|gb|ADR20049.1| PAS/PAC sensor signal transduction histidine kinase [Marivirga
           tractuosa DSM 4126]
          Length = 856

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 97/641 (15%), Positives = 234/641 (36%), Gaps = 50/641 (7%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQ 234
           +++ E      +L     + + +   +   V    +  G  +  N  + K          
Sbjct: 241 TDITEKKEIELELQKQNDLVQNILQHIPMGVAVNENSTGKQILINQQFSKAYGWPENELT 300

Query: 235 KAIGESRKLFKEE---------IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                  K++ EE         I   + S +     + E   T + GN K      +  +
Sbjct: 301 DVSTFFNKIYPEENYRKEIIARITADIESGNMSRMQWSEIKITTKKGNTKYVDAKNIPLT 360

Query: 286 FGEAGIAI--DVSKEI----TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
             +  I+   DV+  +     + + L     IL +++ A    D++    + N S ++  
Sbjct: 361 EQDLMISTVTDVTDRVGNRKVLEETLKEKENILESISDAFYALDKDYNFTYVNNSALKTM 420

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQ 398
             D   L    + +E             QL    +K+ +  V ++ +  + + ++     
Sbjct: 421 GKDRNDLIGKNAFEEF-----------PQLKKSIFKDYLEEVNRTGKPAQFEFYYQFYDL 469

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
                +  +  G +++ ++++T +  ++       + + E +D +S+       +     
Sbjct: 470 WFDESIYPSEHGFSVF-YKDITKKKIIDKALEEAYEKESEILDSISDAFVAVDQNLNFTY 528

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N     L    +   + G +  ++         E +            ++E ++     
Sbjct: 529 FNKKAEKLLNITQEE-ALGKNQWDLFNYAKGTIAEEEYNKALK------NNETRTFDFYD 581

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE------RALTEKNEALRKADEIKNSF 572
           ELL D        P     ++       +  + E      + L +    L ++++    F
Sbjct: 582 ELL-DKWFNIRSYPSKRGLSIYFRDITLEKKQQEELEKLNQELQDYTHKLEQSNQELEQF 640

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
               S++L+ PL  +  F   L+      L+ K   Y+ +    +  +  ++ D+L+ + 
Sbjct: 641 AYIASHDLQEPLRMVSSFITQLQKKYENQLDDKAQTYINFAVDGAQRMRQIIIDLLEYSR 700

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
             AG  K+    + LN+ + EV   + + +++ NI +++    +L      +  + Q+F 
Sbjct: 701 --AGTQKVELQKLDLNNEIAEVLSLLHSSINKKNIELEID---ELPEIDYSKTAIRQLFH 755

Query: 693 KILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            ++ NA+ +S KG    + ++       + F + +NG  I     + +F  F     + +
Sbjct: 756 NLIGNAIKYSKKGEGRKIEIRFKEFKKHYQFKISDNGIGIDPKYHEKIFIIFQRLHSKSE 815

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLGL+I +  +  +GG++ + S     +     +P K
Sbjct: 816 YSGTGLGLAICKKIVEKYGGNIWVESQFGKGSNFYFTVPKK 856



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 49/278 (17%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D++  L   N++           L     +  + + +     LP +     WK      +
Sbjct: 146 DKDYNLLASNQAMKN------RILDDTSFDLTVGQNILQIPLLPAEY-IDKWKLLFDECF 198

Query: 383 KSSETHKDT-----------WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           K  E   +            W   N   L  I  +    G +    ++T + ++E +   
Sbjct: 199 KGKEISIEIPPSEADYVKPAWIHAN---LTPIYENEVVIGLVCHSTDITEKKEIELELQK 255

Query: 432 LVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +    + H+  GVAV     G+  L N  F   +   EN L+      +++   ++ 
Sbjct: 256 QNDLVQNILQHIPMGVAVNENSTGKQILINQQFSKAYGWPENELT------DVSTFFNKI 309

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           Y E +      A IT+           +E  + S +++S I +   +    +V+  +   
Sbjct: 310 YPEENYRKEIIARITA----------DIESGNMSRMQWSEIKITTKKGNTKYVDAKNIPL 359

Query: 551 AERALTE-----------KNEALRKADEIKNSFVQHVS 577
            E+ L               + L +  + K + ++ +S
Sbjct: 360 TEQDLMISTVTDVTDRVGNRKVLEETLKEKENILESIS 397


>gi|126658520|ref|ZP_01729668.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126620262|gb|EAZ90983.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 400

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 124/240 (51%), Gaps = 3/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +   N+ L+   + K+ ++ HVS+ELR+PL  I+GF+ +L+    G+LN KQ QYV  I 
Sbjct: 159 IQSDNQKLQSYSDHKSDYLSHVSHELRTPLAGILGFSKMLREEIYGTLNDKQKQYVNGIR 218

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL LVND LDL+ ++A   +L   T+ + D+       +  K  E N+ + +   
Sbjct: 219 ISGEHLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISMVQPKADEQNLNLLLKLS 278

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            ++     D++++ QI   +LSNA+ F+ KGS V L+  + +    F V + G  I E+ 
Sbjct: 279 DQVDFCKVDQRKIKQILINLLSNAIKFTEKGS-VTLEVDKIDCLLTFCVVDTGIGIKEED 337

Query: 735 CKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + +F  F         + +G GLGL++ +    LH G +++ S     +     +P +E
Sbjct: 338 QQKLFQPFQQIHSNLSRKHKGTGLGLALSKKLAQLHQGDLTLQSEYGKGSCFTLELPLRE 397


>gi|120600688|ref|YP_965262.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|120560781|gb|ABM26708.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
          Length = 1189

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 88/427 (20%), Positives = 172/427 (40%), Gaps = 22/427 (5%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT---VQVDLETKYN 430
           W+ N     +S + +K T +     T+ +  T       IW F   T    ++  + + N
Sbjct: 509 WRRNALPARQSWKDYKYTIY-----TVVIASTIMILVSIIWAFYTRTHYRKRLLAKKELN 563

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++     +D +   + V      + + N ++ + +K     L   + I   + +    
Sbjct: 564 QQLQFMQSIVDAIPHPIYVRNKQRELTMCNESYLNAFKASRKDLLYKSTIEGASRSPEAP 623

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
             + +        I  F D    + G    +      Y          +  +++V+D V+
Sbjct: 624 IVDKEYIQALEDGIAVFKDRELHINGDKYNIYHWFKSYGDEAGNVEGIIGGWIDVSDRVK 683

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY- 609
               L    E    A + K++F+  +S+E+R+P+  IIG  +L+        NS+Q    
Sbjct: 684 LIEELEHAKEVADSASQAKSTFLATMSHEIRTPMNAIIGMLELVLQR----TNSQQFDLN 739

Query: 610 -VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++    S+  LL L+ DILD+A ++AG + L+     L  +   V +       +  I 
Sbjct: 740 SIKVAYDSANDLLELIGDILDIARIEAGQLSLSPIRTNLKAITTSVVRVFDGLARQKGIT 799

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFS 722
           +++  D  + +  + D  R+ QI S ++ NA+ F+  G  V ++   +N        +F+
Sbjct: 800 LQLDFDPTITNDVLVDPMRIKQILSNLIGNAIKFTDSGG-VKVEIQSENVTNTTHTILFT 858

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V + G  I ED  + +F+ F           G GLGL I  S   + GG + + S     
Sbjct: 859 VTDTGIGISEDDQEKLFSPFSQAHGTHNTHGGTGLGLMISRSLCEMMGGSLILKSKLYQG 918

Query: 782 TTINCRI 788
           T +   +
Sbjct: 919 TQVRMEL 925



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 89/251 (35%), Gaps = 26/251 (10%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-------GIVFQK 235
           L  K+L+  +   + + D++   ++ R++  ++   N SY    +           +   
Sbjct: 557 LAKKELNQQLQFMQSIVDAIPHPIYVRNKQRELTMCNESYLNAFKASRKDLLYKSTIEGA 616

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFGEAGIAI 293
           +      +  +E  + +    A+ K+    ++  ++     +K       N  G  G  I
Sbjct: 617 SRSPEAPIVDKEYIQALEDGIAVFKDRELHINGDKYNIYHWFKSYGDEAGNVEGIIGGWI 676

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-----------------NRYLQFHNRSFV 336
           DVS  + + ++L H  E+  + + A + F                      LQ  N    
Sbjct: 677 DVSDRVKLIEELEHAKEVADSASQAKSTFLATMSHEIRTPMNAIIGMLELVLQRTNSQQF 736

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           +L  I +A+ + N   + + + L  A     QL+    + N+ ++  S     D      
Sbjct: 737 DLNSIKVAYDSANDLLELIGDILDIARIEAGQLSLSPIRTNLKAITTSVVRVFDGLARQK 796

Query: 397 GQTLHVIVTSN 407
           G TL +     
Sbjct: 797 GITLQLDFDPT 807


>gi|332977344|gb|EGK14129.1| sensor histidine kinase ResE [Desmospora sp. 8437]
          Length = 600

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 159/397 (40%), Gaps = 34/397 (8%)

Query: 401 HVIVTSNP---RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            V V S+     G     F  +  Q++      +   +     +  +++GV      G +
Sbjct: 224 RVPVRSHEWDEIGDLAVAFNRMAGQLEESIQALSREKEQLASILRSMADGVITLDAKGHV 283

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            ++NP                               E  G  L+ + +  F  +   L+G
Sbjct: 284 IVTNPPAEKFLSDW---------------------REEGGGSLWPSPLEQFFHQ--VLEG 320

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             E+  D      +     A  M       D +R   A+       R+ D+++  FV +V
Sbjct: 321 EREVFGD----IDVHGRTWALVMAPLYAGPDEIRGAVAVLRDVTEERRMDKLRKDFVANV 376

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL+ + G+++ L      S    Q +    I   S  +  LV ++LDLA ++AG
Sbjct: 377 SHELRTPLSMLQGYSEALLDDIAAS-PEDQREITRVIHDESLRMGRLVRELLDLARMEAG 435

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L  ST+ + +L+  V +       E  + ++V     +     D  ++ Q+ + +  
Sbjct: 436 HIRLEPSTVHVPELIRRVYRKFQAIAREEKVALQVDLPDGMDPVQWDEDKVEQVLTNLTD 495

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+  + +G  V L+A          V++ GS IP++    VF RF        R   G 
Sbjct: 496 NAIRHTPEGGRVTLRALFAEKGVQLIVEDTGSGIPQEDLPFVFERFYKADKARTRGQGGT 555

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGL+IV+     H G VS+ S +   T    ++P K
Sbjct: 556 GLGLAIVKHIAEAHAGSVSVKSKEGEGTRFTVQLPVK 592



 Score = 41.1 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 101/346 (29%), Gaps = 56/346 (16%)

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
           A   S ++ +  I+ +  +       F   V    H   +  +I  +  +F      ++ 
Sbjct: 195 AFFLSSRITQPLIQMKRGAERMARGEFSARVPVRSH---EWDEIGDLAVAFNRMAGQLEE 251

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S    ++ +      IL ++   +   D   ++   N                 P  ++ 
Sbjct: 252 S-IQALSREKEQLASILRSMADGVITLDAKGHVIVTN-----------------PPAEKF 293

Query: 356 LEFLRSANKL-----PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           L   R          P +  +    E    V+   + H  TW L       +    +   
Sbjct: 294 LSDWREEGGGSLWPSPLEQFFHQVLEGEREVFGDIDVHGRTWAL---VMAPLYAGPDEIR 350

Query: 411 GTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           G + +  ++T +  ++            +  T + +     + L + +A    D R    
Sbjct: 351 GAVAVLRDVTEERRMDKLRKDFVANVSHELRTPLSMLQGYSEALLDDIAASPEDQR---- 406

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                      +  L  G  +R +         E+    L  + +   +  R+  +    
Sbjct: 407 ----EITRVIHDESLRMGRLVRELLDLAR---MEAGHIRLEPSTVHVPELIRRVYRKFQA 459

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           +  +  +    + LP+           D  + E+ LT   +   + 
Sbjct: 460 IAREEKVALQ-VDLPDG----MDPVQWDEDKVEQVLTNLTDNAIRH 500


>gi|254719631|ref|ZP_05181442.1| sensory box histidine kinase [Brucella sp. 83/13]
 gi|265984641|ref|ZP_06097376.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            83/13]
 gi|306837734|ref|ZP_07470602.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF
            2653]
 gi|264663233|gb|EEZ33494.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            83/13]
 gi|306407190|gb|EFM63401.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF
            2653]
          Length = 1036

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 129/737 (17%), Positives = 262/737 (35%), Gaps = 73/737 (9%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERAARPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-----EQLNWKTW 374
             I   +  + + N++ +++   +             L+ +R A  +      E  + +T 
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES------------LDDIRGAGGVDVLFNSESDDGETR 597

Query: 375  KENIFSVYKSSETHKDTW----HLPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVDL 425
            +  +      SE   DT         G+ L + +        P    +    +   +  L
Sbjct: 598  QSMVLRHADGSEQPVDTHLNAIAWRGGRALMLSLMPVAAADLPAPAELPTASDDEEKQAL 657

Query: 426  ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            E     L       +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A
Sbjct: 658  EAHVEEL----KTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFA 712

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVN 544
              S+         L    + S  ++ + + G         L  +I  LP+ +       +
Sbjct: 713  IESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRD 772

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-N 603
            +T   R E  LT   +   +    K  F+  +S+E+R+PL  IIGF++L+   K G + N
Sbjct: 773  ITQWKRTEEELTNARKEAERTSNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGN 832

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +
Sbjct: 833  DRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQAN 892

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFS 722
               + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  
Sbjct: 893  RERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMR 952

Query: 723  VKNNGSSIPEDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHV 772
            V++ G  + +   +     F            +A   +  G GLGL + ++ +  +    
Sbjct: 953  VRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQF 1012

Query: 773  SISSSDEGVTTINCRIP 789
            +I S+    T +    P
Sbjct: 1013 AIDSNPGQGTVVEIVFP 1029


>gi|117918935|ref|YP_868127.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117611267|gb|ABK46721.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1686

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 99/513 (19%), Positives = 202/513 (39%), Gaps = 34/513 (6%)

Query: 291  IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            IA  +  E  ++  +     +  +   A  I D+   +   N + + L       L    
Sbjct: 693  IAQRIHTEEQLSLSMNKFQALFDSAVDACVITDRQGVIIECNSALLSL-------LKYQH 745

Query: 351  SNDELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSETHKD---TWHLPNGQTLHVIVT 405
             +  +     +     L E  +   +++ + +V +  +   +      +     + V + 
Sbjct: 746  KHQLIGRRTLVYYPPHLGETDSETLFEQRLQTVLEQGQLRFEADFVTSMAEIVNVEVTLK 805

Query: 406  SNPRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                 G+++    + +L+ +  +         +    +     GV +   +G  +  N  
Sbjct: 806  RIELNGSLFVLGTYHDLSERKLMNALLERERDLLKHVLGRSPIGVWIC-IEGVCRYVNEQ 864

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
               +       L  G  +  I A    Y       DL     T F+ +    +G  +   
Sbjct: 865  ITEMTG-----LQVGQSVYPIFAQPDDYRCHISELDLSQDS-TVFETQLFDCKG--QRRD 916

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              +  Y  +       +   +++TD+   +  L    +A   A+  K+ F+ ++S+E+R+
Sbjct: 917  VLLTAYHTVQDGQNANLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFLANMSHEIRT 976

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            P+  I+G + L+  ++   L+SKQ  YV  +  ++  LL ++NDILD + ++A  M +  
Sbjct: 977  PMNAILGMSYLVLQTE---LSSKQRDYVGKVHQAAGSLLGILNDILDFSKIEAEKMDIEC 1033

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
            +   L+D+L+ +   ++ K+ E N+        +L  +   D  RL QI     +NA+ F
Sbjct: 1034 AVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQILINYCNNAVKF 1093

Query: 702  SSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
            S   S V+L        +  +  F V++ G  IPE     +F  F  V  +   +  G G
Sbjct: 1094 SHNDSNVVLSCESKVHGEQVELTFCVEDFGIGIPEQKQGVLFGSFEQVDASTSREYGGTG 1153

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            LGL+I +   +L GG V   S     +    R+
Sbjct: 1154 LGLAICKRLAHLMGGEVWCESELGVGSRFYVRL 1186


>gi|260777959|ref|ZP_05886852.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605972|gb|EEX32257.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 619

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 120/243 (49%), Gaps = 9/243 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + E  +    A+  K+ F+ ++S+E+R+P+  I+G  +LLK +K    N  Q  YV+ 
Sbjct: 197 QQIIESKKKAEIANVKKSEFLANMSHEIRTPMNGIVGVAELLKETK---PNEVQRNYVDI 253

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  SS  LL+++NDILD + ++AG  +L+ +   L  L+ +     + +  +  +     
Sbjct: 254 LLTSSHTLLDIINDILDFSKIEAGHFELDPTKFDLKSLIQQQANEYSIRAKQQELFFDCN 313

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGS 728
            D  +     AD  RL Q+ + ++ NA+ F+ +G     + L          F VK+ G 
Sbjct: 314 IDPAVPQEIEADSVRLKQVINNLIGNALKFTHRGYVELNIKLLENETGNQLQFEVKDTGI 373

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I +D   S+F++F         Q  G GLGL+I +  + L GG + ++S  +  ++   
Sbjct: 374 GIAKDKLDSIFDKFQQADGSTARQYGGTGLGLAISQKIVELMGGKLQVTSEVDLGSSFYF 433

Query: 787 RIP 789
            IP
Sbjct: 434 SIP 436


>gi|148380483|ref|YP_001255024.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933173|ref|YP_001384707.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936407|ref|YP_001388228.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. Hall]
 gi|148289967|emb|CAL84080.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929217|gb|ABS34717.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152932321|gb|ABS37820.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 569

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 167/396 (42%), Gaps = 37/396 (9%)

Query: 401 HVIVTSNPRGGTIW-MFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VI+ S    G +   F    ++     +E +           +  +  GV     + ++
Sbjct: 202 RVIINSEDEIGRLGRTFNAMADILENSLVEVRDKQ--NRLEAILKSMDSGVVAIDKEFKV 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP    L+  + + +  G ++ +            D    +  I   + ++R     
Sbjct: 260 IMINPYANKLFGIKRDII--GENLMDNIRDFELEKVLRDKEPGYKEIGILWPEKRTLRVK 317

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +++S            N  T+    ++TD  + E               ++  FV +V
Sbjct: 318 TTDIISK---------YDNIGTVAVVQDITDIKKLE--------------NMREQFVANV 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF++ LK          + ++++ I+  +  L  L+NDIL L+ ++  
Sbjct: 355 SHELKTPLTSIKGFSETLK---YVDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQ 411

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L    I LN+L+ +V   +     + NI+I ++ + K+   + ++ +  Q+   ++ 
Sbjct: 412 KQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGE-KVPLLIGNKDKYNQMIINLVD 470

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ ++     V +   +D G+ +F V++ G  I E+    +F RF        R   G 
Sbjct: 471 NAIKYTEPNGYVSIGTRQDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRVEGGT 530

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    G + + S  +  T    +IP 
Sbjct: 531 GLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPL 566



 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 28/193 (14%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSK--EI 299
           LF   I   MI      +     ++  +            +   G    A+ D+ +   +
Sbjct: 171 LFSSRISMAMIKPIKNLEFVTSRIARGDFDRRVIINSEDEIGRLGRTFNAMADILENSLV 230

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V D+      IL ++   +   D+   +   N    +L+ I    +      + L++ +
Sbjct: 231 EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPYANKLFGIKRDIIG-----ENLMDNI 285

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHL-PNGQTLHV----IVTSNPRGGTI 413
           R                 +  V +  E  +K+   L P  +TL V    I++     GT+
Sbjct: 286 RDF--------------ELEKVLRDKEPGYKEIGILWPEKRTLRVKTTDIISKYDNIGTV 331

Query: 414 WMFENLTVQVDLE 426
            + +++T    LE
Sbjct: 332 AVVQDITDIKKLE 344


>gi|320160070|ref|YP_004173294.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
 gi|319993923|dbj|BAJ62694.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
          Length = 2319

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 173/388 (44%), Gaps = 29/388 (7%)

Query: 415  MFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  + +  +    +   +        ++ +++GV V   +G+I L N +   +       
Sbjct: 1945 LIRDQSEHLGKMLREQQIEASRSRALLEAIADGVLVTDGEGKITLFNASAERILDLRAQE 2004

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-----ELLSDSVLEY 528
            +  G  +   +    R          +   I ++  E KS  G       +L +  V+  
Sbjct: 2005 V-IGRSLEQFSGLFGRSGAN------WVRTIRNWSKEPKSYGGEFFADQFDLDNGKVIAV 2057

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             + P+      L  V++   +  E           + D +K+ FV +VS+ELR+P+T+I 
Sbjct: 2058 HLAPVFWRSQFLGTVSIFRDITHE----------VQVDRMKSEFVANVSHELRTPMTSIK 2107

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            G+ +++     G L  +Q  ++E +  ++  L  LVND+LDL+ +++G + LN + + L 
Sbjct: 2108 GYVEIMLLGATGELTPQQRHFLEIVKNNTERLGVLVNDLLDLSRIESGKITLNMTDLNLR 2167

Query: 649  DLLNEVKQSI--ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             L  EV + +   ++  E  +   +  +  L +   D +R+ Q+ + ++ N  +++ +  
Sbjct: 2168 LLAEEVMEYVSRRSQEEEKPMNFSLEVEENLPTVRGDEERIRQVITNLVVNGYNYTPENG 2227

Query: 707  TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
             V ++  R++G+    V+++G  I  +  + +F RF         +  G GLGL++ ++ 
Sbjct: 2228 HVWVRIFRNDGEVQVDVQDDGIGISIEDQERIFERFYRGEDPLVLKTAGTGLGLAVAKTI 2287

Query: 765  INLHGGHVSISSSD--EGVTTINCRIPS 790
            + +H G +   SS      +T +  +P 
Sbjct: 2288 VTMHNGRIWFKSSGIRGEGSTFSFTLPL 2315



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 299  ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                 + + +  +L  +   + + D    +   N S   + ++    +    S ++    
Sbjct: 1958 REQQIEASRSRALLEAIADGVLVTDGEGKITLFNASAERILDLRAQEVIGR-SLEQFSGL 2016

Query: 359  LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTIW 414
               +         + W +   S     E   D + L NG+ + V +      +   GT+ 
Sbjct: 2017 FGRSGANW-VRTIRNWSKEPKSY--GGEFFADQFDLDNGKVIAVHLAPVFWRSQFLGTVS 2073

Query: 415  MFENLTVQVDLET 427
            +F ++T +V ++ 
Sbjct: 2074 IFRDITHEVQVDR 2086


>gi|124009209|ref|ZP_01693890.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
 gi|123985194|gb|EAY25128.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
          Length = 1055

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 198/486 (40%), Gaps = 43/486 (8%)

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           F + +  +++E+   F+   P+ D +L F ++ +K  EQ+     K  I    +S E   
Sbjct: 195 FWSHTTRQIYEVPDGFV---PTADRMLNFYKAESK--EQV-----KHLIARCIRSKEVFS 244

Query: 390 DTWHL----PNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           +   +         + ++      G          +++  +   E +   +         
Sbjct: 245 EELKVVTAKKREVWVRLVGQGEFEGEQCQRIYGTVQDINERKHQEEEAKKINTRLALATQ 304

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
               G+  +       +SN          E           + +      +  D   +  
Sbjct: 305 TARVGIWEYD-----IVSNK-LTWDDSMFELYGLKYEDFDGVYSAWVGLLHPDDVQRVEE 358

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQ------TMLTFVNVTDSVRAER 553
            +  + + +++       +  DS ++Y  ++  + N         + T  ++T    A  
Sbjct: 359 EVAWAIEGKKEFDTAFRVVWQDSSVKYIKALARVHNDSQGSALFMIGTNWDITHEKLASE 418

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  +    A++ K+ F+ ++S+E+R+PL  +IGF DLL+ SK   LN  Q +Y+  I
Sbjct: 419 KLKEAKKQADTANKAKSEFLANMSHEIRTPLNGVIGFADLLQRSK---LNETQQKYISTI 475

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+T LL+++ +ILD + ++AG + L  +   L +L  ++   I  + H+ ++ + +  
Sbjct: 476 YQSATSLLDIITNILDFSKIEAGKLDLMVAKTDLLNLSQQIINLIRYQAHKKDLEVLLHI 535

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI--FSVKNNG 727
           D  +      D  ++ Q+   +LSNA  F+++G     + L+   D    +  F+V++ G
Sbjct: 536 DNDIPRFVWIDEVKMRQVLVNLLSNATKFTTEGEIELKIDLQERLDEEMVVLRFAVRDTG 595

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +    +F  F        RR  G GLGLSI    ++L G  + + S     +   
Sbjct: 596 IGIAPENKGKIFEAFSQEDSSTTRRFGGTGLGLSISNKLLDLMGSRLLVESITGRGSVFY 655

Query: 786 CRIPSK 791
             IP K
Sbjct: 656 FDIPVK 661


>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 958

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 127/245 (51%), Gaps = 7/245 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           ++   L +     R+A  +K+ F+ ++S+E+R+P+  I+GFT+LL + +    N ++ ++
Sbjct: 319 KSNELLRKATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSEE---TNEEKRKH 375

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S   LL+L+ND+LDL+ +++G M++        +LL E+ ++     +   + +
Sbjct: 376 LVTIYRSGEHLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVETYLPMAYSKGLHL 435

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               D  +    V D  R+ QI + ++SN + F+S+G  + ++A    G   + V + G 
Sbjct: 436 AYSLDNNVPEYVVGDAFRIKQILTNLVSNGIKFTSQG-YITIQANYKEGKITYIVNDTGI 494

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE+    +F  F         +  G+GLGL+I +  ++L  G + I S     T +  
Sbjct: 495 GIPEEKLDKIFEPFTQLDRTMSRKYGGMGLGLAITKKLVDLMNGKLYIESHIGKGTKVVV 554

Query: 787 RIPSK 791
            +P+K
Sbjct: 555 SLPTK 559


>gi|332666984|ref|YP_004449772.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
 gi|332335798|gb|AEE52899.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
          Length = 1316

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 99/402 (24%), Positives = 189/402 (47%), Gaps = 39/402 (9%)

Query: 420  TVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL-- 474
            T   +L  +   + ++       +  + E + V   + RI+ +N +F + +K  E  +  
Sbjct: 767  TSNHELNARIQQIEELYTYYETILATVHEPMLVLDKNIRIRSANESFCATFKVAEEDIIG 826

Query: 475  --------------SPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLE 519
                          +    + +I    +R++N     D       T   +  + +Q +  
Sbjct: 827  TSMFKLSNNQWNIPALRELLEDIVPKNNRFHNFEVDLDFSIVGPKTLLLNAHRIVQKS-- 884

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDS------VRAERALTEKNEALRKADEIKNSFV 573
              ++ ++  +++ + +A+ +   +   +       + A+R   +K +   +A + K  F+
Sbjct: 885  -KNEELIVLTMVDITDARKLALELQKKEKQVLDELMEAKRIAEQKTKIAEEAVKAKQQFL 943

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             ++S+E+R+P+  IIGFT+++  +K   LN  Q +Y+  I  S   L+ L+NDILDLA V
Sbjct: 944  SNMSHEIRTPMNAIIGFTNVVMKTK---LNEAQKEYINAIKVSGESLIILINDILDLAKV 1000

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFS 692
            +AG M   +S   L   ++++     TKM E N+ +    D  +    V D  RL QI  
Sbjct: 1001 EAGKMVFEHSPFRLFSSVSDMLHLFETKMQEKNLVLIKQYDTNVPEILVGDPVRLRQIML 1060

Query: 693  KILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             ++SNA+ F++ G  TV +   +++ D     FSV + G  IPE+  K +F+ F   A  
Sbjct: 1061 NLISNAVKFTNAGKITVRVDLLKEDQDHVSVEFSVSDTGIGIPENNLKQIFDAFEQIAPE 1120

Query: 749  GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              R   G GLGL+IV+  + L GG+V + S  +  +T +  +
Sbjct: 1121 TTRLNGGTGLGLAIVKQMVKLQGGNVKVKSKVDKGSTFSFSL 1162


>gi|329955945|ref|ZP_08296748.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525325|gb|EGF52375.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 867

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 101/499 (20%), Positives = 208/499 (41%), Gaps = 19/499 (3%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + +Q     +I  ++   +  +D +  + F NR+ VE+  +            ++   +
Sbjct: 373 RLVEQRDEFDKIFCSIRDGLITYDTDLRIHFVNRALVEMLGLSSDTYMARSYEGQIAGSI 432

Query: 360 RSANKLPEQLNWKTWKENIFS-----VYKSSETHKDTW--HLPNGQTLHVIVTSNPRGGT 412
                  E +     K+ I       + + +   ++T   + P    +  I   +   G 
Sbjct: 433 FHIYMNGENILQTLLKQVIRDKKPVIIPEKAFMQENTKGAYFPVSGEVVPIFAKDKLTGM 492

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEE 471
             +  N++ +      +N  ++         +  +  F  P G ++  N  + +      
Sbjct: 493 AIVCRNISEEEMQRRFFNMAIEESSIYPWQYNTRLKCFHFPGGLLQRFN-CYDNTGYISR 551

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L    H  ++  T   + +   G +  + +     +      G  E        Y  +
Sbjct: 552 EELDLIIHPGDLPRTRKHFNDIMLGHEPNSRMSFRLQN----ADGGYEWWEFRSTAYDGL 607

Query: 532 PLPNAQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                  +L         +  E  L    +   +AD++K++F+ ++S+E+R+PL  I+GF
Sbjct: 608 TADIPYMVLGVCQSIQRYKDTEDELIAARDRALQADKLKSAFLANMSHEIRTPLNAIVGF 667

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +DLLK  +  S + +  Q+VE I+ + T+LL L+NDILDL+ +++G M    S+  L  +
Sbjct: 668 SDLLKDLEAFS-SEEVQQFVETININCTLLLALINDILDLSRIESGTMDFQLSSYNLTFI 726

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + +V  S    M +  + ++       G   V D  RL Q+ + +++NA  F++KGS  +
Sbjct: 727 MQQVYDSQRLSMPQ-GVELRTDFPEGTGKDIVTDSVRLKQVVNNLINNARKFTAKGSITL 785

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
             +  + G     V++ G+ I ++  K +F RF       Q  G GLGLSI ++ +    
Sbjct: 786 GYSMEEPGYTTVFVEDTGAGISDEDQKHIFERFYKADSFTQ--GAGLGLSICQTIVERLH 843

Query: 770 GHVSISSSDEGVTTINCRI 788
           G ++++S     T    R+
Sbjct: 844 GTITVTSKLGRGTRFEVRL 862


>gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 941

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 169/457 (36%), Gaps = 34/457 (7%)

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           DE+ +  R+  +  E    +   E       +    + T             T+      
Sbjct: 258 DEIADMARAVEQFLEDRRQRRQAEQALKELNAELEARVT-----------QRTAELSTAL 306

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEE 471
             +   +  +   E             I+++ + + V      R    N A   L     
Sbjct: 307 AGLTAEIVERQHAEEAARASEHFLDSIIENIPDTIFVKDAATLRFVRFNKAGEQLLGYRR 366

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L   +       + + +Y   D   L +  +    DE    +  + LL    +    +
Sbjct: 367 EELIGKSVHDLFPPSEAEFYALKDRDVLKSQQLVDVPDEPVHTRYGVRLLHTMKIPIVDV 426

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSFV 573
                  +    ++T+  RAE  L    E L                     ++ K+ F+
Sbjct: 427 RGEPQFLLGISRDITEQRRAEDELRRYREHLEDMIRERTAELAVAKEHADAANQAKSDFL 486

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            H+S+ELR+PL  I+G+  +L+  K  +L  +Q+  +  I  S   LL ++NDILD+A +
Sbjct: 487 AHMSHELRTPLNGILGYAQILRRDK--NLEQRQADGIAVIQRSGEHLLAIINDILDMAKI 544

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFS 692
           +AG + L  S ++L   +  +  +I  K  E  +         L +    D +RL Q+  
Sbjct: 545 EAGKVDLYLSDVLLERFIYFIAGTIRLKATEKGLAFSCDMAPGLPAAVRVDEKRLRQVLL 604

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            +LSNA+ F+  GS  +           F V++ G  I E   +++F  F   +    R 
Sbjct: 605 NLLSNAIKFTETGSVCLRVDWTPPTRLRFEVQDTGIGIEEAHRETIFRPFEQVSDARHRV 664

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+I    + L GG + + S   G +     +
Sbjct: 665 GGTGLGLAISRQLVRLMGGEIHVESRRGGGSIFRFEL 701


>gi|259416961|ref|ZP_05740881.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348400|gb|EEW60177.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 826

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 151/372 (40%), Gaps = 17/372 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            ++   ++       + S+ + + GPD R+   N AF  +     +              
Sbjct: 308 ERHQVELEQLSTVAQNASDSIILSGPDLRVFWVNDAFTRMTGYTIDDAIGKRP----GDL 363

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +    + +     A  I   +   + +    +      ++ +++P+ N    +  V   
Sbjct: 364 LNGPETDPETIRDIAEHIARGERLHREILNYTKDGDTIWVDTNLVPVLNENGDMRMVIGI 423

Query: 547 DSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +       R    L E   A  +AD  K  F+ ++S+E+R+P+  IIG  DLL  +   +
Sbjct: 424 ERDVTSQKRNAVELAEAKRAAEEADRTKTEFLANMSHEIRTPMNGIIGMADLLSET---A 480

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +Q QYV+ I  SS  LL ++NDILDL  +++G + L      L   +      +   
Sbjct: 481 LPEEQEQYVQIIRTSSKALLKIINDILDLTRMESGKLSLEPVDFDLERCIESAVDILRPV 540

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGD 718
             E  + + V     L  S  AD  R+ QI   ++ NA+ F++ G     +L+A  D   
Sbjct: 541 AREKGLTLNVNYATDLPKSVRADDGRVRQILVNLVGNAVKFTASGRVDVRVLRAQSDPYR 600

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               V+++G  + +    ++F+RF        R   G GLGL+I         G +++ S
Sbjct: 601 LTIDVQDSGIGMSQAQLNNIFDRFSQADAATTRSFGGTGLGLTISRLLAQQMQGDITVHS 660

Query: 777 SDEGVTTINCRI 788
                +  +  I
Sbjct: 661 EPGQGSCFSLYI 672



 Score = 41.1 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 47/139 (33%), Gaps = 9/139 (6%)

Query: 175 YSELAETTLKCKKLSN---HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT----E 227
            S +     + ++L      +     +  +    +        + W N ++ + T    +
Sbjct: 294 RSTIKTLRKREQELERHQVELEQLSTVAQNASDSIILSGPDLRVFWVNDAFTRMTGYTID 353

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK--IVRVLNS 285
                    +    +   E I+      +  E+   E ++  + G+       +V VLN 
Sbjct: 354 DAIGKRPGDLLNGPETDPETIRDIAEHIARGERLHREILNYTKDGDTIWVDTNLVPVLNE 413

Query: 286 FGEAGIAIDVSKEITVNDQ 304
            G+  + I + +++T   +
Sbjct: 414 NGDMRMVIGIERDVTSQKR 432


>gi|282900038|ref|ZP_06307997.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195070|gb|EFA70008.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 663

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 115/229 (50%), Gaps = 4/229 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             I+N F+  +S+EL +PLT +IG +  L    LG L  +Q +Y++ I  S   LL+++N
Sbjct: 430 SRIRNEFLATISHELLTPLTYVIGMSSTLLRWPLGELTPRQREYLQTIHDSGERLLDMIN 489

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVAD 683
           DILDL+ + AG   LN     L  L   +  S+  K     + +K+    + +   F AD
Sbjct: 490 DILDLSQIQAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSAD 549

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R+ QI   +L+NA+ F+ +G  V L+   ++   IF V++ G  IPE+    VF +F 
Sbjct: 550 PGRIEQIIWNLLTNAIKFTPQGGNVTLRFWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQ 609

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                      G G+GL++ +  + LH G + + S+    +     IPS
Sbjct: 610 QVDASYHRPYEGTGIGLALTKQIVELHRGRIEVESTVGVGSIFTVWIPS 658


>gi|319901914|ref|YP_004161642.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319416945|gb|ADV44056.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 870

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/513 (21%), Positives = 208/513 (40%), Gaps = 41/513 (7%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  + +Q     +I  ++   +  +D +  + F N S + +  +            ++  
Sbjct: 374 QARLVEQRNEFDDIFCSIRDGLISYDTDLRIHFVNHSLMLMLGLSPETHTARFYEGQIAG 433

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN---------GQTLHVIVTSNP 408
            +       E +     K N   + K+     + +   N         G+ + V      
Sbjct: 434 SIFHIYVDGEDILTDLLK-NACELQKAVPIPANAFMRENVQGIYFPVSGEVVPVFAKGR- 491

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH--LSEGVAVFGPDGRIKLSNPA--FR 464
             G   +  N++ +   +  +N  ++          +S+   VF          PA  F 
Sbjct: 492 MTGMALVCRNISEEERQKRFFNMAIEESSVYPWQYDMSQQCFVF----------PAGLFH 541

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD------ERKSLQGTL 518
            L             +R+I     R         +FAAI+    +        +   G  
Sbjct: 542 RLGHRGSVETMTLEDVRDIVHPNDR----EATHAIFAAILQGHMEKPRMSFRVRKADGGY 597

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVS 577
           E        Y+ +   +   +L         +  E AL    +   +AD++K++F+ ++S
Sbjct: 598 EWWEFRFTIYNGLTEDDPYMVLGVAQSIQRYKDTEDALITARDHAMQADKLKSAFLANMS 657

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+DLLK     S   +  ++V  I+ + T+LL L+NDILDL+ ++AG 
Sbjct: 658 HEIRTPLNAIVGFSDLLKDLNAFS-KEEVQEFVGLINTNCTLLLALINDILDLSRIEAGT 716

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
           M+ N +   LN ++ ++  S    M +  + +++    + G S   D  RL Q+ + +++
Sbjct: 717 MEFNLAEFNLNYIMQDIYDSQYLSMPQ-GVELRIECPVEEGKSIHTDIVRLKQVVNNLVN 775

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA  F+ +GS  I     +       V++ G  IPE+  K +F RF    +  Q  G GL
Sbjct: 776 NAKKFTVQGSITIGYTVDEPEYTTVYVEDTGKGIPEEAAKHIFERFYKVDNFVQ--GAGL 833

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI ++ +    G +S+ S     T    R+P
Sbjct: 834 GLSICQTIVEHLRGTISVFSQVGRGTRFEVRMP 866


>gi|310641218|ref|YP_003945976.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309246168|gb|ADO55735.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 600

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 154/373 (41%), Gaps = 32/373 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                   +    + +++ G+ +      I L N     +      R++           
Sbjct: 246 KTIRDNEDLLQSVMSNMTGGILMIDARECIALVNRESERMLGVVGKRVT----------- 294

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTMLTFVN 544
             + Y+E         +I      R+ L G + L +  + ++    +P+   +     + 
Sbjct: 295 -DKPYHELKKHYELTKLIEGSIQSRERLHGEVHLYNPEERLVLLDGVPMYEDEGGYRGML 353

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                     L +   A+R+ + +++ FV +VS+EL++P+  + GF + L    +     
Sbjct: 354 F---------LLQDITAIRRLENMRSEFVANVSHELKTPIAAVKGFAETLLGGGVKD-EE 403

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
               +++ I   S  L  L+ DIL+L+ +++    L+ S I ++  +  + + +     +
Sbjct: 404 TARSFLQIIYDESERLNRLIGDILELSKIESKRSPLDCSPIHISSFIESLLEKLNNVAAK 463

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNG--DF 719
             I + +    +L    AD  +L QIF  +LSN ++++  G  V +K     RDN     
Sbjct: 464 KRITLHMDIPDEL-FMEADEDKLQQIFLNLLSNGINYTLDGGKVKIKVITLQRDNDTEKV 522

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F+V + G  IP+     +F RF            G GLGLSIV+  ++LH G +S+ S 
Sbjct: 523 VFTVSDTGIGIPKKDLPRIFERFYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESE 582

Query: 778 DEGVTTINCRIPS 790
               TT    +P 
Sbjct: 583 LGLGTTFTVELPL 595


>gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 946

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 128/264 (48%), Gaps = 13/264 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + +     V + +    ++ L    +     +  K+ F+ ++S+E+R+P+  ++G T+LL
Sbjct: 243 SGEAERMRVYIAELEATKQELIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELL 302

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            T+   +LN++Q ++ E +  S   LL +VNDILD++ ++AG ++L++    L + +   
Sbjct: 303 LTT---ALNAEQRKFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDFDLVNTVESA 359

Query: 655 KQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
              +A +  E  I +   I     G +  D  RL Q+   ++ NA+ F+ KG   V +  
Sbjct: 360 ISLMAARAAEKQIDLGAYIEPAARGIYRGDPARLRQVLLNLIGNAIKFTEKGGVAVRVSV 419

Query: 713 ARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
            R            F V + G  IPED+C  +F +F         +  G GLGL+I +  
Sbjct: 420 YRVEDPQTKASHLRFEVHDTGIGIPEDVCGRLFQKFSQADSSVTRRYGGTGLGLAICKQI 479

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           + L  G++ ++S     +T   ++
Sbjct: 480 VELMDGNIGVNSRVGAGSTFWFQL 503


>gi|71736609|ref|YP_273435.1| two-component sensor/regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557162|gb|AAZ36373.1| two-component hybrid sensor and regulator alr3120 [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 576

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 117/523 (22%), Positives = 207/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 AMVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L +LL+  
Sbjct: 342 KDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VSFAHAGVIEGDWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|83415010|dbj|BAD80468.2| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 977

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 9/320 (2%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+       +   +      L   I TS  DE   L      ++ ++ E  ++ L 
Sbjct: 389 GWAAHLGMRIEQLAHAADAMASGQLQQQIPTSGRDELTVLAQAFNRMAVTLREL-LVSLE 447

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +     T      + R E+A     E    A++ K++F+ ++S+ELR+PL  IIG+++++
Sbjct: 448 HRVQERTAALRETNDRLEQA----REQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMM 503

Query: 595 KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                  +   +       I+ +   LL L+N ILDL+ ++AG M+L   +  L +L+N 
Sbjct: 504 MEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELING 563

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           VK  I   + +N  ++ V     +G   AD  +L Q    +LSNA  F+ +G T+ L+ A
Sbjct: 564 VKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVA 622

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                 +F V ++G  +  +    +F  F        R   G GLGLSI   FI + GG 
Sbjct: 623 AQGDQVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGK 682

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S     +T    +P +
Sbjct: 683 ITVESVLGEGSTFTITLPRQ 702


>gi|153941140|ref|YP_001391824.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
 gi|152937036|gb|ABS42534.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
          Length = 569

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 168/396 (42%), Gaps = 37/396 (9%)

Query: 401 HVIVTSNPRGGTIW-MFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VI+ S+   G +   F    ++     +E +           +  +  GV     + ++
Sbjct: 202 RVIINSDDEIGRLGRTFNAMADILENSLVEVRDKQ--NRLEAILKSMDSGVVAIDKEFKV 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP    L+  + + +  G ++ +            D    +  I   + ++R     
Sbjct: 260 IMINPYANKLFGIKRDII--GENLMDNIRDFELEKVLKDKELGYKEIGILWPEKRTLRVK 317

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +++S            N  T+    ++TD  + E               ++  FV +V
Sbjct: 318 TTDIISK---------YDNIGTVAVVQDITDIKKLE--------------NMREQFVANV 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF++ LK          + ++++ I+  +  L  L+NDIL L+ ++  
Sbjct: 355 SHELKTPLTSIKGFSETLK---YVDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQ 411

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L    I LN+L+ +V   +     + NIRI ++ + K+   + ++ +  Q+   ++ 
Sbjct: 412 KQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLIGNKDKYNQMIINLVD 470

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ ++     V +   +D G+ +F V++ G  I E+    +F RF        R   G 
Sbjct: 471 NAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGT 530

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    G + + S  +  T    +IP 
Sbjct: 531 GLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPL 566



 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSK--EI 299
           LF   I   MI      +     ++  +            +   G    A+ D+ +   +
Sbjct: 171 LFSSRISMAMIKPIKNLEFVTSRIARGDFDRRVIINSDDEIGRLGRTFNAMADILENSLV 230

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V D+      IL ++   +   D+   +   N    +L+ I    +      + L++ +
Sbjct: 231 EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPYANKLFGIKRDIIG-----ENLMDNI 285

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWM 415
           R         + +   + I  ++            P  +TL V    I++     GT+ +
Sbjct: 286 RDFELEKVLKDKELGYKEIGILW------------PEKRTLRVKTTDIISKYDNIGTVAV 333

Query: 416 FENLTVQVDLE 426
            +++T    LE
Sbjct: 334 VQDITDIKKLE 344


>gi|86159947|ref|YP_466732.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776458|gb|ABC83295.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1088

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 134/777 (17%), Positives = 256/777 (32%), Gaps = 93/777 (11%)

Query: 80  NCLTIVWDGKDET------PEIIG---QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA 130
           + + + W+   E        E++G    L    D    + ++L+     +     ++   
Sbjct: 202 DGVILTWNRAAERLFGYAADEVVGRSVTLLIPPDRRHEEAEILA-----ELRAGRRVEHF 256

Query: 131 -TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189
            T+++RK+G   D+            EGR+ G+   +R   +       A       +  
Sbjct: 257 ETQRVRKDGTRLDVSVTVSPVR--DEEGRLVGASKIVR--DISEQKRSEAVLAAALGRAQ 312

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK---NTETEGIVFQKAIGESRKLFKE 246
                   + ++L   V   D  G     N  +K+          + + A          
Sbjct: 313 EERRRLAAVLEALPAGVVITDAEGGFTEVNAEFKRIWGTPPNPQRMSEYAAWRGWWPDGR 372

Query: 247 EIKKRMISSSALEKNFCETVSTLE------HGNNKSYKIVRVL-------NSFGEAGIAI 293
            ++ R  + S         V           G+ ++  I              G     +
Sbjct: 373 PVETREWALSRALSTGDVIVPGDIVDIEKFDGSGRATIINAAAPIRNAEGTIVGAVLAEV 432

Query: 294 DVSKEITVNDQLTH-----------TYEILHNLTVAI--AIFDQNRYLQFHNRSFVELWE 340
           DV+++  V D L                +     V +    FD +      N +F  +  
Sbjct: 433 DVTEQRRVEDALRRAEEAARASEARFRSVFEQAAVGMGRVRFD-DGRWIDVNDAFCRMLG 491

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY--KSSETHKDTWHLPNGQ 398
                + + P            +   +   ++         Y  +    H D   +    
Sbjct: 492 RSREDMLSTPWPA----MTHPEDLELDLGPFRRMSAGELDSYTIEKRFLHADGHEVWAKL 547

Query: 399 TLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           TL ++  +  R    I + E++  +   ET      +     ++H++EG+ +F P G I 
Sbjct: 548 TLSLVRDARGRPDYEIAIIEDIGDRKRAETALREHEERLRAVMEHMAEGLVIFDPSGNIT 607

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS---- 513
             NPA  S+                +     RY    +      AI      ER      
Sbjct: 608 YQNPASVSIHDRRLAGERRRLDQLVLNWRVRRYPEGIEVPPRDWAIPRVLRGERVQNERF 667

Query: 514 -LQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADE 567
            +    +     V  YS  P+ +A        LT   +T+  RAE AL + NE LR+ D 
Sbjct: 668 FVDCVEDPGRSFVGIYSGSPVHDAGGKLAYGFLTIEEITEQARAESALRDANEKLREVDR 727

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+ELR+PL  I     +L  ++     +++++  + ++     L  LV+D+
Sbjct: 728 RKDEFLGMLSHELRNPLAPIRNSLYILDHAEPAGQQARRAK--DIVARQVEHLTRLVDDL 785

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD+  +  G ++L    + +  L   V +   + M    + + +       +   D  RL
Sbjct: 786 LDVTRIARGKIELRREDLDVVGLARRVAEDHRSLMQGRGVELTIDLLPGALTVNGDPARL 845

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +L+NA  F+  G  V L    +       V++ G  I  D+  ++F  F     
Sbjct: 846 TQVLGNLLNNAAKFTPPGGRVTLSVRAEGDRAALRVRDTGPGIAPDVLPTIFEPFFQAKQ 905

Query: 748 RGQRRGVGLGLSIVES-------------FINLHGGHVSISSSD-EGVTTINCRIPS 790
                       +  S              + LHGG V   S+     T     +P 
Sbjct: 906 T-----------LARSEGGLGLGLALVKGLVALHGGEVHAYSAGQGQGTEFVVTVPL 951



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 97/317 (30%), Gaps = 32/317 (10%)

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVST 268
           D    I+  N   ++  E       + +G +  +++ E            ++   E V  
Sbjct: 84  DAQWRIVRVN---RRQEELSRKPRSETVGRTLAEVWPELAGPESRYRREYDRCMRERVPV 140

Query: 269 LEHGN----NKSYKIVRVLNS-FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD 323
                    +    +     S  G A    D+++      + T    I+ +   AI   D
Sbjct: 141 QFQAYYAPLDLWTGVTAYPVSAGGIAVFFRDITRIKRAEQEQTRLAAIVESTDDAIVAKD 200

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
            +  +   NR+   L+             DE++    +    P++ + +          +
Sbjct: 201 LDGVILTWNRAAERLFGYAA---------DEVVGRSVTLLIPPDRRHEEAEILAELRAGR 251

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNP----RGGTIW---MFENLTVQVDLET-------KY 429
             E  +      +G  L V VT +P     G  +    +  +++ Q   E        + 
Sbjct: 252 RVEHFETQRVRKDGTRLDVSVTVSPVRDEEGRLVGASKIVRDISEQKRSEAVLAAALGRA 311

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     ++ L  GV +   +G     N  F+ +W T  N      +          
Sbjct: 312 QEERRRLAAVLEALPAGVVITDAEGGFTEVNAEFKRIWGTPPNPQRMSEYAAWRGWWPDG 371

Query: 490 YYNESDGWDLFAAIITS 506
              E+  W L  A+ T 
Sbjct: 372 RPVETREWALSRALSTG 388



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 84/277 (30%), Gaps = 18/277 (6%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
            +++  H  E+L     A    D    +   NR   EL     +      +  E+   L 
Sbjct: 63  THEEAAHALELLE-FGDAFFELDAQWRIVRVNRRQEELSRKPRSETVGR-TLAEVWPELA 120

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
                PE       +E    + +        ++ P      V       GG    F ++T
Sbjct: 121 G----PESRYR---REYDRCMRERVPVQFQAYYAPLDLWTGVTAYPVSAGGIAVFFRDIT 173

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                E +   L       ++   + +     DG I   N A   L+    + +  G  +
Sbjct: 174 RIKRAEQEQTRL----AAIVESTDDAIVAKDLDGVILTWNRAAERLFGYAADEV-VGRSV 228

Query: 481 RNIAATCSRYYNESDGWDLFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +     R+       +L A   +  F+ +R    GT     D  +  S +     + +
Sbjct: 229 TLLIPPDRRHEEAEILAELRAGRRVEHFETQRVRKDGT---RLDVSVTVSPVRDEEGRLV 285

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                V D    +R+      AL +A E +      +
Sbjct: 286 GASKIVRDISEQKRSEAVLAAALGRAQEERRRLAAVL 322


>gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
 gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
          Length = 1092

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/507 (18%), Positives = 203/507 (40%), Gaps = 27/507 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  ++ Q      I ++    I   +++  L   N++F      +  FL       ++  
Sbjct: 313 EEKISTQAGRLQSIFNSSNHIIWSINKDYKLTSFNQNF------EYEFLKYFNFKPQVNT 366

Query: 358 FLRSANK--LPEQLNWKTWKENIFSVY--KSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
            LR      +    ++  W +   S    ++     +  +  +   +   +  NP     
Sbjct: 367 DLRGKLITSIFTSGSYNFWGDKFESCLNGEAINFEVEFENPLDKSVVWKEIFLNPIYTES 426

Query: 410 ---GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G   +  ++T +                  +   +       DG I L +P+ +  
Sbjct: 427 GDITGLSGIAHDITERKINALNIQKSELKFRNIFESFQDIYFNCRFDGEIILISPSVKEN 486

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
               E     G +I N     ++   +     +    + +F+    +  G L     +V 
Sbjct: 487 IG-YEQDEVTGNNITNYY-LYTKKTKDLLKKLVSRRKVQNFEATLITRDGRLVNCICNVR 544

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                            ++T   +A R L         + ++K  F+ ++S+E+R+P+  
Sbjct: 545 LVRDKDSREVTIEGVARDITKLKQANRELLHAKNMAENSLKVKEQFLANMSHEIRTPMNG 604

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +IG  DLL  ++   LN +Q  +V  I  SS  LL ++NDILDL+ ++AG MK+      
Sbjct: 605 VIGMVDLLSQTQ---LNPEQMNFVHTIKRSSETLLTILNDILDLSKIEAGKMKIQPHITE 661

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           +  + ++V    + + ++ +I +    D ++  ++  D  R++QI S + SNA+ F+ K 
Sbjct: 662 VKSVFDKVLNLFSQQANQKSIDLSYKIDSEIPKYLKIDETRIIQIISNLTSNALKFTEKE 721

Query: 706 STVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
             V+L  +++  +  +  +V++ G  I E+  + +F  F    +   +   G GLGL+I 
Sbjct: 722 GKVLLHISKEIKDNLYRIAVEDTGIGISENDQQQLFKLFTQVDNSSTKAFSGTGLGLAIS 781

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +   +L GG + +SS  +  +     +
Sbjct: 782 KQLSSLMGGQIGVSSEPDEGSVFWFTL 808


>gi|220908645|ref|YP_002483956.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865256|gb|ACL45595.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 796

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/532 (16%), Positives = 195/532 (36%), Gaps = 55/532 (10%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + +  V     H   +L ++     + D++    + N  + E+  +    +      + L
Sbjct: 134 AAQEEVQATKQHLERVLCSIHDGFYVLDRHWRYTYVNDRYCEMAGMQREAILG----ENL 189

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            +        P+ ++         ++ K      + ++    +     V  +P G T+++
Sbjct: 190 WQLF------PDGVDTLFDHHLQRAIDKQIPLQFEYFYGAWQRWYEHRVYPSPDGITVFV 243

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPDGRIK-----LSNPAFRSL 466
            E +T    ++       +    + +   +   +        G I       +NP    +
Sbjct: 244 NE-ITDHKQVQVALRQSQERFRISQELSLDAFTILNSVRDQTGTIVDFVWIYANPKAAEI 302

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +   ++L      + +          SD +D +  ++ + +     L    E +S    
Sbjct: 303 LQYSVDQLIG----QRLLDLLPGNQTNSDLFDRYVRVVETGEPHDIELAYNSEGISGWFR 358

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELR 581
             ++          + +       AER                A+ IK+ F+  +S+ELR
Sbjct: 359 NMAVKLEDGVAIFFSDITDRKQAEAERERLLKEAQAARAEAEAANRIKDEFLAVLSHELR 418

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           SPL  I+G+T L+++ +  +  +K ++ +  I  ++ +   L++D+LD+A +  G M LN
Sbjct: 419 SPLNPILGWTQLMQSQRFDA--AKTTEALAAIERNAKLQTQLIDDLLDVAKILRGKMSLN 476

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L  ++      + T     +I++      ++G+   D  RL Q+   +LSNA+ F
Sbjct: 477 RVPVNLMFVIKAAIDIVMTAAVAKSIQLHSEL-AQIGAVYGDAGRLQQVIWNLLSNAIKF 535

Query: 702 SSKGSTVILKAARDNGDFI--------------------FSVKNNGSSIPEDMCKSVFNR 741
           +  G  V ++  R                           +V + G  I  +    +F  
Sbjct: 536 TPAGGRVEIRLKRVEQQLYQPQPNSLPSIHPLPTTPYAHITVSDTGKGINPNFLPYIFES 595

Query: 742 FVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
           F         +  G+GLGL+IV   +  HGG V+  S  +    T    +P 
Sbjct: 596 FHQEDASITRKYGGLGLGLAIVRYLVEAHGGTVTAESPGEGQGATFTVCLPL 647


>gi|303246258|ref|ZP_07332538.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492321|gb|EFL52193.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1229

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 152/396 (38%), Gaps = 31/396 (7%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G       +  + D               ++   + +     DG +  ++P    L+   
Sbjct: 341 GAYLHASRMLERQDAAQALAVSEARFRGLVETSPDLIWETDMDGVVTYASPRAAELFGEP 400

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            N L      + I        +  + W+              +L G  E      LE S 
Sbjct: 401 PNALVGKKMAQFIPPAGDAPEDTPETWE-------------ATLPGAGE-GGGKALEVSC 446

Query: 531 IPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +P    +           ++T+   A+  L    +   +A++ K+ F+  +S+E+R+PL 
Sbjct: 447 VPRRTPEGEALGRRGVARDITERKNAQCLLDAARQEAVRANQAKSEFLARMSHEIRTPLN 506

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG + L   ++   L  +Q  Y+  I +S+  LL ++NDILD + ++AG   +     
Sbjct: 507 AVIGMSHLALKTE---LTPRQEDYLTKIRSSADTLLAVINDILDYSKIEAGRFVIERIPF 563

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L+ +L  V   +     E  +   +   D      V D  RL Q+   ++ NA+ F+  
Sbjct: 564 DLDAVLGNVVDIMGPGAAEKQLEFLLSVGDDVPSWLVGDPLRLGQVLLNLVGNAVKFTDS 623

Query: 705 GST-VILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           G   V ++  +   D     F+V++ G  +  +   ++F  F         +  G GLGL
Sbjct: 624 GEVLVEVRLEKAVADAARLRFAVRDTGIGMTPEQKHNLFRPFAQADGSISRRYGGTGLGL 683

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINC--RIPSKE 792
           SI    + L GG++++ S     +       +P  +
Sbjct: 684 SICHRLVELMGGNLAVESVSGQGSEFYFSLTLPVSQ 719



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 160 SGSCAFLRILSLDGI---YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           + + A + +L++ G     S + E     + L+   + F+ L ++   L+W  D  G + 
Sbjct: 328 ASASALVLLLAVIGAYLHASRMLERQDAAQALAVSEARFRGLVETSPDLIWETDMDGVVT 387

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
           +A+    +  E  G      +G+    F          +    + +  T+     G  K+
Sbjct: 388 YASP---RAAELFGEPPNALVGKKMAQFIPPAGDAPEDTP---ETWEATLPGAGEGGGKA 441

Query: 277 YKIVRVL--NSFGEA----GIAIDVSKEITVN 302
            ++  V      GEA    G+A D+++     
Sbjct: 442 LEVSCVPRRTPEGEALGRRGVARDITERKNAQ 473


>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 781

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            H+R+IAA   +   ++ G  +      S  +    L   +  L+ S+ E  +I +   Q
Sbjct: 179 RHLRHIAAQTEKLSIDTIGNPITLERQPSDSESEDELDSVVNALN-SMRETILIDIK--Q 235

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  +  +   +       E ++ A++ K+ F+  +S+E+R+P+  +IG  ++L+ +
Sbjct: 236 QAQIEDALLAAKEEKIETRRMIERVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDT 295

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN  Q  Y++ I  S   LL ++NDILD + ++AG M L      LN+LLN+  Q 
Sbjct: 296 ---PLNDSQKHYLDVIFRSGESLLEIINDILDYSKIEAGKMNLENVDFDLNELLNDCVQL 352

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
            +   H+ +I     IS         D  RL QI   ++ NA  F+S G   V++K+ +D
Sbjct: 353 FSATTHKRDIEFVCAISPETPTQLRGDPTRLRQIVVNLIGNAFKFTSNGHVMVLVKSLQD 412

Query: 716 NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                    FS+ ++G  I +++ +++F  F        RR  G GLGL+I +    L G
Sbjct: 413 RTSEHPLLRFSIVDSGIGISKEIQRNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMG 472

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S     +T    I
Sbjct: 473 GTIGVESEYGKGSTFWFTI 491


>gi|169602473|ref|XP_001794658.1| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
 gi|160706176|gb|EAT87998.2| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
          Length = 968

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/593 (16%), Positives = 220/593 (37%), Gaps = 75/593 (12%)

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIV-------RVLNSFGEAGIAIDVSK-----E 298
            +  +    +     +     G    ++++             G   I  D+++      
Sbjct: 56  ELCRTRQKLEKRRLGLRQPVTGTRLVFEVISEPVIHDETGEFLGGIVIFKDITEFTKQIA 115

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + +       I + + V +     N    + ++ + +   +               + 
Sbjct: 116 AQIEENEKQFEYIANFMPVMVWTTTPNGLHDWFSQRWYDYTGLTED------------QS 163

Query: 359 LRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNP----RGG 411
           L    +LP    +    K   F    + + +   +     +G+   ++  + P     G 
Sbjct: 164 LGEGWRLPFHPDDMTATKSRWFHSLATGDEYNTEYRCQRFDGEWRWMLGRALPFFDDDGK 223

Query: 412 TIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            +  F    ++   V    +     +   + I H    +     D R+ L         +
Sbjct: 224 IVKWFGTCTDIHDLVMARQEARRTREQLQQVIAHAKILLWAVNRDNRLVLL-EGDTKWRR 282

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             EN    G  I ++       +  +D       I    + +++       +  +     
Sbjct: 283 DGENTELLGNDIYDVFG-----FTGADRDRWREPIQEILNGKQQDEIVERYMSENRYFRT 337

Query: 529 SIIPLPNA-------------QTMLTFVNVTDSVRAERALTEKNEALRK----------A 565
            ++PL NA               +   +++T+    E  L E+ +   +          A
Sbjct: 338 RLVPLLNASRIAGAEGTAYVDGVIGVSMDITELREREDQLREQEKENERLLANAAAAKEA 397

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             +K+ F+ ++S+E+R+P+  +IG ++LL      +L+ +Q +  E I  S+  LL ++N
Sbjct: 398 SRMKSQFLANMSHEIRTPIAGVIGMSELLSDM---NLDEEQKECAENIHRSANSLLTVIN 454

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVA 682
           DILD + V++G + +      L+ +L +V + ++       +  +     ++      + 
Sbjct: 455 DILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLVYQSTIQDEVEQDLRVMG 514

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSV 738
           D  RL QI + +L+N++ F+S+GS  + +  +++  D     FSV + G  I E++ K +
Sbjct: 515 DPGRLRQILTNVLTNSIKFTSEGSVKLSVSISQETNDSVTVNFSVIDTGIGIEEEVRKRL 574

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F        RR  G GLGL+I ++ + L  G + + S     TT    IP
Sbjct: 575 FQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 627



 Score = 37.6 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 56/164 (34%), Gaps = 36/164 (21%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G  +++ +  +  ++        + +      L+W  ++   ++            EG  
Sbjct: 229 GTCTDIHDLVMARQEARRTREQLQQVIAHAKILLWAVNRDNRLVL----------LEGDT 278

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG------------NNKSYK-- 278
             +  GE+ +L   +I      + A    + E +  + +G             N+ ++  
Sbjct: 279 KWRRDGENTELLGNDIYDVFGFTGADRDRWREPIQEILNGKQQDEIVERYMSENRYFRTR 338

Query: 279 ------IVRVLNSFGEA------GIAIDVSKEITVNDQLTHTYE 310
                   R+  + G A      G+++D+++     DQL    +
Sbjct: 339 LVPLLNASRIAGAEGTAYVDGVIGVSMDITELREREDQLREQEK 382


>gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response
            regulator [Geobacter bemidjiensis Bem]
 gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response
            regulator, SSF and PAS domain-containing protein
            [Geobacter bemidjiensis Bem]
          Length = 1323

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 167/411 (40%), Gaps = 39/411 (9%)

Query: 417  ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL-- 474
            + +  +   E       +   + ID L +   V    G + + N A       +   +  
Sbjct: 679  QEIMQRRIAEQALRDSERRLADIIDFLPDPTFVVNAQGAVVIWNRAAEEFTGAKAEAMLG 738

Query: 475  ---------SPGTHIRNIAATCSRYYNESDGWDLFAAIITS-----FDDERKSL------ 514
                       G     +       +   +   L+  ++        +   KS       
Sbjct: 739  KAGNECAIPFYGMRRPLLLDMVLAPWRAEEIKPLYVRLVVEGGKIIGEGPVKSASRPHAY 798

Query: 515  -----------QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEAL 562
                       +G +  + +SV + + +     +      ++ + VR     L    E  
Sbjct: 799  TMAMAAPLYDSEGEVIAVIESVRDITELKEGEDELKRHRAHLEELVRERTMELLVAKERA 858

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              A++ K++F+  +S+ELR+PL  I+G+  +LK     +L   Q Q +E +      LL+
Sbjct: 859  EVANQAKSAFLSSMSHELRTPLNAILGYAQILKRQ--DNLTDAQRQQLEIVRGCGEHLLS 916

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
            L+ND+LD+  ++A  M+L   +  L+ LL +V      K  E ++  K     +L  +  
Sbjct: 917  LINDVLDMGKIEAQKMELAELSFDLSALLGQVFSIAKVKADEKDLGFKYEELNRLPRAVR 976

Query: 682  ADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D+++L QI   +LSNA+ ++ +G  TV ++     G F   + + G+ IP D    +F 
Sbjct: 977  GDQRKLKQILLNLLSNAVKYTHRGCVTVRVRYHSSTGVFACEITDTGTGIPRDKLGIIFE 1036

Query: 741  RFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             FV  A  GQ R G GLGLSI    ++L  G V++ S     +T    +P 
Sbjct: 1037 PFVQLADGGQIREGTGLGLSITRRLVSLMHGQVTVESEPGAGSTFRVELPL 1087


>gi|114776540|ref|ZP_01451585.1| Two component system histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553370|gb|EAU55768.1| Two component system histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 1017

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 130/253 (51%), Gaps = 16/253 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT  NEAL +A++ K+ F+ ++S+ELR+PLT+I GF++ L    +G LN  Q++Y++ I+
Sbjct: 308 LTSANEALTRANQAKSQFISNMSHELRTPLTSINGFSEFLIDGFVGPLNETQTKYLKNIN 367

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+N ILDLA ++AG M L    + +  LL+E+   +     + ++R+ +  D
Sbjct: 368 ISGKHLLELINGILDLAKIEAGKMTLKLEKVDVAALLDEILLVLQGYATKTSVRLLLECD 427

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--------------GDFI 720
             +   V DR +  QI   + SNA+ FS +G  V +    +N                  
Sbjct: 428 AAIPGIVLDRTKFKQILYNLCSNAIKFSPQGGEVRIVVDYNNSAAGQHNDDELESYARLT 487

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++ + G  I  +    +FN F      H     G GLGL++ +  + +HGG + ++S+ 
Sbjct: 488 VAIHDEGIGISPEDQVHIFNPFEQADGSHSRNYEGTGLGLTLTQRLVEMHGGSIEVNSAP 547

Query: 779 EGVTTINCRIPSK 791
           +  +     +P +
Sbjct: 548 DKGSCFVFTLPVE 560


>gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B]
 gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B]
          Length = 1947

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 161/376 (42%), Gaps = 20/376 (5%)

Query: 422  QVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            +  +E +   L +   +    +D+    ++V   D R  L N  +R +     + +   T
Sbjct: 1075 EDKVEARTEELSESRYLFQTVLDNSPAAISVKDLDSRYLLVNKIWRQVMSLTRSGVVGFT 1134

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                + A  +    + D   + +  +       K+ +G + +     L Y   P+ +A+ 
Sbjct: 1135 TRELLPAELAERSEQEDSAVVESGDVIQGQARIKNAEGEVRVF----LSYK-FPVFDAKG 1189

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                V    S   E  L    E    A++ K+ F+ ++S+E+R+P+  IIG + L   + 
Sbjct: 1190 ECFAVGSVLSDVTE--LNHAMEIADDANQAKSDFLANMSHEIRTPMNAIIGMSHLALQT- 1246

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               L SKQ  Y+E +  S+  LL ++NDILD + ++AG + +      L+D+++ +   +
Sbjct: 1247 --DLTSKQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEAVDFRLDDVMDNLVSLV 1304

Query: 659  ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              K  ++ + + +     L +  + D  RL QI   + +NA+ F+  G  V+     +  
Sbjct: 1305 GLKAEDHGLELLLDVPPDLPTALIGDPLRLSQILINLGNNAVKFTEDGEVVVAVRVEEES 1364

Query: 718  DF----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
            +      FSV+++G  + ++    +F  F        R   G GLGL+I +  + +  G 
Sbjct: 1365 NAEVRMHFSVRDSGIGMNKEQQSRLFQSFSQADSSTTRKYGGTGLGLAISKQLVAMMDGE 1424

Query: 772  VSISSSDEGVTTINCR 787
            + + S     +     
Sbjct: 1425 IWVESEPGVGSDFQFT 1440


>gi|254420388|ref|ZP_05034112.1| Bacterial signalling protein N terminal repeat [Brevundimonas sp.
           BAL3]
 gi|196186565|gb|EDX81541.1| Bacterial signalling protein N terminal repeat [Brevundimonas sp.
           BAL3]
          Length = 746

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 153/364 (42%), Gaps = 14/364 (3%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
            E ++ +S+G+  +  D R+ L N  +  +       L  G   R +           + 
Sbjct: 233 REAVEAMSDGLGFYDADDRLLLWNARYAEVNPELAPFLKVGITFREVLQIGINEGRYDEA 292

Query: 497 WDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                  IT     R+  + T+E  +  D  L+          T+    ++T   R  +A
Sbjct: 293 IGREDEWITERIRVRRQGESTIEQRVAGDRWLQIQDRRTAEGGTVTVCNDITALKRDAQA 352

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +A   A+  K+ F+ ++S+E+R+PL  +IG +  L  +    L ++Q + ++ + 
Sbjct: 353 LREARDAAEAANVAKSQFLANMSHEIRTPLNGVIGLSQALSKT---DLTAEQHEMLDLMQ 409

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   L  L++DILDLA V++G ++L      L   + E  Q  A    E ++   +  D
Sbjct: 410 ASGRTLQTLLSDILDLARVESGKLELTNDAFELERAVREAAQLYAENAREKHLGFHIDID 469

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
              G     D  RL QI + ++SN++ F+S+G  V L   R           F V++ G 
Sbjct: 470 VDAGLWIRGDVVRLKQILTNLISNSVKFTSQG-FVGLTVQRGPEKEGAPTLRFMVEDTGI 528

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                  + +F+RF         Q  G GLGLSI      + GG +   S   G +    
Sbjct: 529 GFDAATRERLFSRFEQADGGITRQFGGSGLGLSICRQLAEMMGGDLDCESEPGGGSAFIL 588

Query: 787 RIPS 790
            +P 
Sbjct: 589 TLPL 592



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 2/152 (1%)

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           +  +  S    G A+     +   + L H  E +  ++  +  +D +  L   N  + E+
Sbjct: 203 VFLIALSILSIGSALVFMAYMARANALGHIREAVEAMSDGLGFYDADDRLLLWNARYAEV 262

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT-WKENIFSVYKSSETHKDTWHLPNG 397
                 FL    +  E+L+   +  +  E +  +  W      V +  E+  +     + 
Sbjct: 263 NPELAPFLKVGITFREVLQIGINEGRYDEAIGREDEWITERIRVRRQGESTIEQRVAGD- 321

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + L +       GGT+ +  ++T         
Sbjct: 322 RWLQIQDRRTAEGGTVTVCNDITALKRDAQAL 353


>gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 1070

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 141/799 (17%), Positives = 293/799 (36%), Gaps = 93/799 (11%)

Query: 44  LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD-------ETPEII 96
           LIR+R   A++          +  + +    ++T+ +   I W           +  E+ 
Sbjct: 153 LIRERVG-AREHERLA-----LVARHTHNSVVITDRDG-VIDWVNPAFERLSGYKLAEVR 205

Query: 97  GQLHQ-RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC---- 151
           G+L    +  P +D+                L++A    R+     +LV   +N      
Sbjct: 206 GRLPGTFLLCPNSDS-----------GAVKALAEAVRDGRE--CQVELVNRAKNGAEYTI 252

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF-DSLDFLVWHRD 210
            I++             +S+    +   ET  +  +          +      F V   D
Sbjct: 253 LIELTPIRDEDGCCTGFMSVQTDITAQIETRERLSRALRESQSLMDVIRQHTVFSV--TD 310

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRK------LFKEEIKKRMISSSALEKNFCE 264
            AG +   N ++    +  G   ++ +G++ +      +  +     M S+    + +  
Sbjct: 311 PAGVVTDVNDAF---CQQSGYTKEEILGKTHQTLLSSGMHPDAFWVEMRSTIKAGRPWRG 367

Query: 265 TV-STLEHGNNKSYKIVRVL--NSFGEAG----IAIDVSKE-------ITVNDQLTHTYE 310
            + +  + G       +     N+ GE      I  D++              QL  + E
Sbjct: 368 EICNRNKSGELFWVDSIVAPQMNAGGEIERYIFIRFDITNRKHIEAGLAASQRQLEASLE 427

Query: 311 ILHNLTV--AIAIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
            L  +T    I  +  D +      +    ++ E+D  ++   P+ D  + F    ++ P
Sbjct: 428 RLSAVTELGGIGSWEVDLDTMTPIWDDITRKIHEVDGDYV---PNMDTAINFYAPESRGP 484

Query: 367 EQLNWKTWKEN----IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
                    E        +   + T++  W    G+   V+    P    +  F++++ +
Sbjct: 485 ISDAVAHCVETGEPWDLELPLITATNRRIWVRAVGR--RVLRDGKPI-RLVGSFQDVSER 541

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-------ENRLS 475
            + E +   +       ++    GV    P       +   R L+  +        +   
Sbjct: 542 REREEELRLISTRLEVALESSGIGVWDICPPTGEYHWDDGSRRLFGIDRDSANPAPDDWF 601

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G H  +  A  +   N           +      R+S  G   + S  V    +   P 
Sbjct: 602 NGIHPDDREAVSAGLANAYATKTH----VRREYRYRRSDGGYRHIRSFGVYRERLDAPPI 657

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +    +V+  +    AL    E    A   K+ F+ ++S+E+R+PL  ++G T +L 
Sbjct: 658 ITGVHL--DVSADIEQAAALELARERAESASYAKSQFLANMSHEIRTPLNGVLGMTQVLH 715

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++   L  +QS++VE I +S   L +L++DILD++ +++G+++L      + +L+  V 
Sbjct: 716 MTE---LTEQQSRHVETIRSSGQALADLIDDILDISKIESGMIELEQRAFEMPELVAMVS 772

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
                +  E  + + +     +    V D +RL QI   I+ NA+ F+  G   + ++A 
Sbjct: 773 DITRLRAQEKQLALDMSLAPDVAKVVVGDEKRLRQILINIVGNAVKFTDSGRVSIDIRAG 832

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
            ++    F + + G  I  D   S+F+RF    +    Q  G GLGL+I    + L GG 
Sbjct: 833 AED-VVEFRISDTGPGIEPDHLASIFDRFAQADNSITRQYGGTGLGLAICHELVTLMGGE 891

Query: 772 VSISSSDEGVTTINCRIPS 790
           + + S     +T   ++P 
Sbjct: 892 IGVESVPGEGSTFWFKLPL 910



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 98/316 (31%), Gaps = 28/316 (8%)

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
            H    +            A +  ++ +E     +      +  +   ++ I D++  + 
Sbjct: 128 IHDEPLTLDETARNRLISLARLIEELIRERVGAREHERLALVARHTHNSVVITDRDGVID 187

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           + N +F  L    LA         E+   L     L    +    K    +V    E   
Sbjct: 188 WVNPAFERLSGYKLA---------EVRGRLPGTFLLCPNSDSGAVKALAEAVRDGRECQV 238

Query: 390 DTWHLP-NGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           +  +   NG    +++   P         G + +  ++T Q++   + +  ++     +D
Sbjct: 239 ELVNRAKNGAEYTILIELTPIRDEDGCCTGFMSVQTDITAQIETRERLSRALRESQSLMD 298

Query: 442 HLSEG--VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            + +    +V  P G +   N AF       +  +   TH        S   +    W  
Sbjct: 299 VIRQHTVFSVTDPAGVVTDVNDAFCQQSGYTKEEILGKTH----QTLLSSGMHPDAFWVE 354

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERA 554
             + I +    R  +    +      ++  + P  NA     + +    ++T+    E  
Sbjct: 355 MRSTIKAGRPWRGEICNRNKSGELFWVDSIVAPQMNAGGEIERYIFIRFDITNRKHIEAG 414

Query: 555 LTEKNEALRKADEIKN 570
           L      L  + E  +
Sbjct: 415 LAASQRQLEASLERLS 430



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 106/326 (32%), Gaps = 53/326 (16%)

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
           CAI  E       A  R++SL  +  EL       +  +       ++       V   D
Sbjct: 126 CAIHDEPLTLDETARNRLISLARLIEELIR----ERVGAREHERLALVARHTHNSVVITD 181

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
           + G I W N ++++ +  +    +  +  +  L        + + +   ++  E    L 
Sbjct: 182 RDGVIDWVNPAFERLSGYKLAEVRGRLPGTFLLCPNSDSGAVKALAEAVRDGRECQVELV 241

Query: 271 HGNNK------SYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNL----- 315
           +            ++  + +  G       +  D++ +I   ++L+       +L     
Sbjct: 242 NRAKNGAEYTILIELTPIRDEDGCCTGFMSVQTDITAQIETRERLSRALRESQSLMDVIR 301

Query: 316 -TVAIAIFDQNRYLQFHNRSFVE---------LWEIDLAFLATNPSNDELLEFLRSANKL 365
                ++ D    +   N +F +         L +     L++    D     +RS  K 
Sbjct: 302 QHTVFSVTDPAGVVTDVNDAFCQQSGYTKEEILGKTHQTLLSSGMHPDAFWVEMRSTIKA 361

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---GG----TIWMFEN 418
                 + W+  I +  KS            G+   V     P+   GG     I++  +
Sbjct: 362 G-----RPWRGEICNRNKS------------GELFWVDSIVAPQMNAGGEIERYIFIRFD 404

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLS 444
           +T +  +E       +    +++ LS
Sbjct: 405 ITNRKHIEAGLAASQRQLEASLERLS 430


>gi|257060613|ref|YP_003138501.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590779|gb|ACV01666.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 763

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 145/292 (49%), Gaps = 10/292 (3%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           FD E+  L    + L+ ++ +  +      Q       V +  +    L +   A + A+
Sbjct: 327 FDSEKNFLGQIGQHLAVAIYQAQLYAQVQEQKKTFEQRVIERTQ---ELRDTLIAAQSAN 383

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTILLNL 623
             K+ F+ ++S+ELR+PLT IIG +  L      S +    KQ QY++ I  S   LL +
Sbjct: 384 HSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQTIQDSGKHLLEM 443

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGSFV 681
           +N+IL+ + ++AG   L+     L      + + +  +  +   N+++++  + +   F 
Sbjct: 444 INEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQLELQIEPQENFFF 503

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +RL QI   +L+NA+ F+ +G TVIL+  R+  + IF V++ G  I ++    +F  
Sbjct: 504 ADPERLQQILYHLLNNALKFTPEGGTVILRIWREGNEAIFQVEDTGIGIAQEQIPLLFES 563

Query: 742 FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F     + R    G GLGL++ +  + LHGG + + S  +  +    R+P++
Sbjct: 564 FQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVESVLQEGSIFTVRLPNQ 615


>gi|29346408|ref|NP_809911.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568192|ref|ZP_04845603.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338304|gb|AAO76105.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842265|gb|EES70345.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 810

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/515 (20%), Positives = 215/515 (41%), Gaps = 42/515 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF------LATN 349
              + ++ +      I  NL   I ++D++ YL   N   +E++ +          L  N
Sbjct: 312 EDRLALDHREKILRNIYKNLPAGIELYDKDGYLIDINDKELEIFGLTDKNEVLGINLFDN 371

Query: 350 PSND-ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           P+   E+ E LR+ N +   +N+     +   V K  ET +        +   +  + N 
Sbjct: 372 PNIPQEIKEKLRARNDVDFSINY-----DFSKVNKYIETQRKGVINLTTKVTTLYDSQNQ 426

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               +++  + T   +  TK      +     D+ + G A F       L+   +     
Sbjct: 427 FINYLFINIDTTETTNAYTKIQEFENLFLLIGDYANVGFAHFN-----ILTRDGYAQDTW 481

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDG--------------WDLFAAIITSFDDERKSL 514
                   GT +  +    S  + E                   L   +  S ++ + + 
Sbjct: 482 YRNLGEKDGTPMTEVIGVYSHVHPEDQAVLKSFVRGVKEGKATSLRKEVRVSRENGKYTW 541

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                ++ D   E  II     + +    ++T     E+ L    +   + D +K++F+ 
Sbjct: 542 TSINVMVRDYRPEEGII-----EMLCINYDITTLKETEQKLIIARDKAEELDRLKSAFLA 596

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I+GF+ LL  ++      +   Y++ +  ++ +LL L++DILDLA ++
Sbjct: 597 NMSHEIRTPLNAIVGFSSLLAETES---KEECQDYIKIVQDNNDLLLRLISDILDLAKIE 653

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG     Y+ + +N++ +E+ +S   K+ + NI++             D+ R +Q+ +  
Sbjct: 654 AGTFNFVYADLDVNEVCSEIIKSTGMKV-KGNIKLLFEKQIPECHIYTDKNRFMQVITNF 712

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           ++NA+ F+ +G+  +      +    F V++ G  IP     SVF RFV   +  Q  G 
Sbjct: 713 INNALKFTHEGTIALGYEQISSQKIRFYVRDTGVGIPASKINSVFERFVKLNNFVQ--GT 770

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI +S I    G + + S++   +     +P
Sbjct: 771 GLGLSICKSIITQMEGEIGVDSTEGAGSCFWFTLP 805


>gi|88812847|ref|ZP_01128092.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nitrococcus mobilis Nb-231]
 gi|88789917|gb|EAR21039.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nitrococcus mobilis Nb-231]
          Length = 1656

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 111/661 (16%), Positives = 238/661 (36%), Gaps = 67/661 (10%)

Query: 164  AFLRILSLDGI-YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
            A L +L +D    SELA        ++      + + D++   +   D+      AN ++
Sbjct: 882  AVLVLLDIDARKRSELA--------IAEARDYAENIIDTVREPLLVLDERLHAERANRAF 933

Query: 223  -----KKNTETEGIVFQKA------IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
                  + TET G    +       I   R+L ++ + + +       +   E +     
Sbjct: 934  YRTFGVRRTETLGRCLYELGNRQWDIPRLRELMEQILPQNVPVEDFQVEYGFEQLGRRIM 993

Query: 272  GNNKSYKIVRVLNSFGEAGIAI-DVSK----EITVNDQLTHTYEILHNLTVAIAI----F 322
                + +I           +AI D+++    E  + +       +  ++     +    F
Sbjct: 994  -LLNARRIRDPQQQTQRILLAIEDITERRRAETALRESELRYRTLFESMDQGYCVIEMLF 1052

Query: 323  DQNR-----YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            D+N           N +F +      A          L + +R         +   W E 
Sbjct: 1053 DRNGTPTDYRFVEINAAFEKQTGFSAA----------LGKRMREL----APAHEAHWFEI 1098

Query: 378  IFSVYKSSETHKDTWHLP------NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
               V  + E  + T          +G    +  + + R     +F ++T +   E +   
Sbjct: 1099 YGKVALTGEPVRFTNEAKALARWFDGYAFRLGGSKSRR--VAVLFTDITERKRAEEESAR 1156

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            +       ++   + +     +G I+  N   + ++               I        
Sbjct: 1157 I----AAIVESSQDAIVSKDLNGIIQTWNAGAQHIFGYTAQEAIGQPIGIIIPPNHMDEE 1212

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                        +  ++  R+   GTL  +S +V          ++      ++T+  R 
Sbjct: 1213 PNILERIRRGERVDHYETVRQRKDGTLVDISLTVSPILDARGRVSRASKIARDITERKRM 1272

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            ER +  + + L +    K+ F+  +++ELR+PL  I     L+      +L+ +  + +E
Sbjct: 1273 ERQIQGQAKELAEVSRRKDEFLAMLAHELRNPLAPIFNALQLIGQKGENALHEEAREIIE 1332

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                    +  L++D+LD++ + +G ++L    + LN ++    + +   +     ++ +
Sbjct: 1333 ---RQVRHMARLIDDLLDVSRITSGRIRLRPERVDLNTIVERAVERMRPLIDRRGQQLSI 1389

Query: 672  ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +     AD  RL QIF  +L NA  +S+    + L+  RD+   I  V+++G  I 
Sbjct: 1390 EPAQQPIWLDADPTRLEQIFGNLLDNASKYSTNNGHIDLRIERDDHRAISRVRDDGEGIA 1449

Query: 732  EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
             D    +F  F            G+G+GL++V+S + +HGG V   S      +    R+
Sbjct: 1450 ADTLPRIFELFGQAERSLERSEGGLGIGLALVKSLVEMHGGTVDAYSEGLGHGSEFVVRL 1509

Query: 789  P 789
            P
Sbjct: 1510 P 1510



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 88/277 (31%), Gaps = 24/277 (8%)

Query: 296  SKEITVNDQLTHTYEILHNL--TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +    N +L      L NL  +  +AI    R L    R F E     L  LA+     
Sbjct: 760  EEMANRNTELNRLNNDLANLQTSTGLAIVLLGRDLTV--RRFTEQAGEQLGLLAS--DVG 815

Query: 354  ELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--QTLHVIVTS---- 406
              ++ +R    L P      +      +    +   +    + +   +   + +      
Sbjct: 816  RPIDHIRHNLVLDPVAGEASSLDLERLADEAIAHVREVVREVRDSARRWYSLHIRPYLTL 875

Query: 407  -NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
             N   G + +  ++  +   E             ID + E + V       + +N AF  
Sbjct: 876  DNKLDGAVLVLLDIDARKRSELAIAEARDYAENIIDTVREPLLVLDERLHAERANRAFYR 935

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII-TSFDDERKSLQGTLELLSDS 524
             +             R +    +R ++     +L   I+  +   E   ++   E L   
Sbjct: 936  TFGVRRTETLG----RCLYELGNRQWDIPRLRELMEQILPQNVPVEDFQVEYGFEQLGRR 991

Query: 525  VLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALT 556
            ++  +   + + Q      +L   ++T+  RAE AL 
Sbjct: 992  IMLLNARRIRDPQQQTQRILLAIEDITERRRAETALR 1028


>gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 544

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 125/261 (47%), Gaps = 10/261 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + Q +L      +  +    L+   +A   A+  K++F+ ++S+E+R+P+  IIG  DLL
Sbjct: 128 HKQKILLQKQAEELEQKMMQLSLAQKAAEAANIAKSAFLANMSHEIRTPMNAIIGMADLL 187

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +   SL  +Q +YV     +   LLNL+NDILDL+ V+AG +KL      +  L+ + 
Sbjct: 188 WET---SLTKEQREYVGIFRTAGQNLLNLINDILDLSKVEAGHLKLEQQDFNIKKLVEKT 244

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--- 710
            + ++ + +   + +       +    V D+ RL QI   +L NA+ F+ KG  +++   
Sbjct: 245 VEFMSVQANIKFLSLSYQIKPDVPGFVVGDQNRLQQILVNLLGNAIKFTEKGEVILIIEK 304

Query: 711 -KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                +N    FSV + G  I ++  + +F  F            G GLGL+I +  +  
Sbjct: 305 LSMQEENVFLKFSVSDTGIGIEKEKSEIIFESFTQADASTTSKFGGTGLGLTICKRLVEA 364

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GGH+ + S  E  +T    I
Sbjct: 365 MGGHIGVESEIEQGSTFFFSI 385


>gi|183179349|ref|ZP_02957560.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|183012760|gb|EDT88060.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
          Length = 740

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 153/367 (41%), Gaps = 14/367 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + +N   Q   E K     ++  E +D     +     DG+    N  F  L     N
Sbjct: 374 IQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNN 433

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          A  +  +  +    +     +S + E   +  T       V E S   
Sbjct: 434 EVIDKEPQEIFPAEVAERFAAA--HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSD 491

Query: 533 LPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +     +   +++T+    E  L +  EA     + K  F+ ++S+E+R+P+  I+G 
Sbjct: 492 RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGM 551

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L   +    L++ Q +YV  I+ S+  LL ++NDILD + ++AG + +      L+D+
Sbjct: 552 AHLALNT---PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 608

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L+ V   ++ K  E  I   +  D  +    + D  RL Q+   +  NA+ F+S+G  V 
Sbjct: 609 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 668

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              + +         F+VK+ G  I +D    +F+ F    +    Q  G GLGLSI + 
Sbjct: 669 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 728

Query: 764 FINLHGG 770
            + L GG
Sbjct: 729 LVELMGG 735



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 13/148 (8%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  +K+     + + + D+    ++     G  L  N  +                E +
Sbjct: 384 RLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVID--KEPQ 441

Query: 242 KLFKEEIKKRMISSS----ALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GEAG 290
           ++F  E+ +R  ++       + +    VS ++  G  +   +     S       G  G
Sbjct: 442 EIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVG 501

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVA 318
           I +D+++   + D+L    E    ++ A
Sbjct: 502 ILLDMTERKEMEDELRKAKEAADAMSQA 529


>gi|292492033|ref|YP_003527472.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580628|gb|ADE15085.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 788

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/522 (18%), Positives = 205/522 (39%), Gaps = 33/522 (6%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQFHNRSFVELW 339
             +  AG   ++++ +   + L  + E+L  +T A    I+  D+    Q+ +  + + +
Sbjct: 122 APWFVAGTCQEITQLVKAEEALRRSEEMLQRVTDAASVLISYLDRKLRFQYVSSGYEKRF 181

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
           +  L  +      + L +   +A    E+   +  K  +  VY     + +       + 
Sbjct: 182 QRPLEDIQGRYMWEILGKNAFAAV---EEYVQRALKGEVV-VYNKELPYDEIGP----RY 233

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           +HV    +   G +  F  +T+ +    K +         ++  ++ +     +G I+  
Sbjct: 234 VHVQYIPDITDGHVLGFSAITIDLTESRKLSERAAQLSAIVESSTDAILSQDLNGIIQSW 293

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     L+  +   +        I    +         +           ER +   T+ 
Sbjct: 294 NQGAEHLFGYKAEEM--------IGQPIAPLIPSHRKKEEIQMRKRIKRGERVAPYETVR 345

Query: 520 LLSDS---VLEYSIIPLPNAQTM-----LTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           L  D     +  +I PL ++Q           ++T+    +  L  + E L + D  K+ 
Sbjct: 346 LHKDGSEVTISLTISPLQDSQGRLIGASKIARDITEYKHQQEQLRRQAELLTETDRRKDE 405

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +++ELR+PL  I     +LK   +G+      + V         L++LV D+LD++
Sbjct: 406 FLATLAHELRNPLAPIANSLQILKQ--VGNNPEALEKAVSISERQLQHLVHLVEDLLDVS 463

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +  G ++L    + L+ ++    +   + +      + V          AD  RL Q  
Sbjct: 464 RITRGKIQLRKEPVTLDTIIKSALEISRSHIKAGEHTLCVEVPETQVLLQADLTRLAQAV 523

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           S +L NA  ++  G  + L A  +N   + +V+++G  I +++   +F+ FV     G  
Sbjct: 524 SNLLINAAKYTPPGGHIKLTARCENQQVVIAVQDDGIGIAQELLPRIFDMFVQAERPGGY 583

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
              G+G+GL +V+  + LHGG    +S   +   T   R+P 
Sbjct: 584 APGGLGIGLPLVKGLVELHGGQAEAASPGLDQGCTFTIRLPL 625


>gi|254411336|ref|ZP_05025113.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181837|gb|EDX76824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 789

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 15/295 (5%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKAD 566
           +  Q + +L    + E+  + +  AQ          S+        + L +  +A + A+
Sbjct: 355 RHWQESEKLFLKQIAEHLAVAIYQAQLYAQLHQQKSSLEQRVIERTQELRDALQATQAAN 414

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN------SKQSQYVEYISASSTIL 620
             K+ F+  +S+ELR+PLT +IG +  L    LG          KQ +Y++ I  +   L
Sbjct: 415 HAKSEFLAAMSHELRTPLTCVIGLSATLLRWSLGEGGSKTVSIEKQRRYLQTIQENGEHL 474

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLG 678
           L L+NDILD + ++AG   LN +   L  L  +  +S+  K     + + +         
Sbjct: 475 LALINDILDFSQLEAGKAVLNINEFSLRYLAQQTLRSLKEKASSGQVELILDWQVPTPKD 534

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F AD +RL QI   +L NA+ F+  G  V L+  R+    +F +++ G  IP++    +
Sbjct: 535 RFQADPRRLRQILFNLLGNAIKFTPAGGQVTLRGWREQNRAVFQIEDTGIGIPQEQIPLM 594

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F +F            G GLGL++ +  + LHGG + + S+    +    R+P +
Sbjct: 595 FQKFQQLEKTYQRTYEGTGLGLALTQQLVELHGGTIDVESTVGKGSIFTVRVPIQ 649


>gi|150401859|ref|YP_001325625.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
 gi|150014562|gb|ABR57013.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
          Length = 640

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 131/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE+     NE L+K D+ K+  +  VS+ELR+PLT+I G+ +L+    +G++N  Q + 
Sbjct: 399 QAEKLEISYNE-LKKLDKFKSEIISIVSHELRTPLTSIKGYVELVLDGTMGTINESQKRC 457

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E  + +   L  L++++LDL+ ++ G +K++ S + LND++  V  S+       NI+I
Sbjct: 458 LEIANENIDRLKRLIDNMLDLSKIERGELKMDISKVNLNDIVQNVVHSLKPLADGKNIKI 517

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +    +   D+ ++  + + ++ NA+ FS     V ++A ++N     +VK+NG  
Sbjct: 518 INKVEPITANL--DKDKITGVLTNLIENAIKFSPVNENVTIEAFKENNMVHITVKDNGPG 575

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP+     +F+ F       +R   G GLGL+I +S +  HGG + + S     +T +  
Sbjct: 576 IPKSELTKIFDIFYQVNSSAKRIKSGSGLGLAICKSIVESHGGKIWVESKFGKESTFHIL 635

Query: 788 IPS 790
           +P 
Sbjct: 636 LPL 638


>gi|288959456|ref|YP_003449797.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288911764|dbj|BAI73253.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 680

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 157/375 (41%), Gaps = 16/375 (4%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
                   +      D   + + +  PDG++   N    +L     + L     + N A 
Sbjct: 296 TQALRASERRSQALFDSSFQVMGLLSPDGQVLGLNRPACALAGLPADAL-----VGNRAW 350

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFV 543
               +    +    F   I      R     T  +      V++ +I P+ + +  +T +
Sbjct: 351 EIRGWARTDELATAFRHSIEKAASGRFVRYETDVVTDGATRVMDVTIKPVFDEKGTVTVL 410

Query: 544 NVTDSVRAER-----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            V      ER      L    +    A+  K++F+  +S+ELR+PL  IIGF+D++    
Sbjct: 411 VVEARDITERVEAAERLAAALDQAEAANRAKSAFLATMSHELRTPLNAIIGFSDIMLHEL 470

Query: 599 LGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            G L + +   YV ++  S   LL+L+ND+LD++ ++AG   L+ S +   D +   +  
Sbjct: 471 FGPLGSPRYRDYVRHVQNSGRHLLDLINDVLDMSKLEAGRYTLDESWLEPADAIETCRAL 530

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDN 716
            A       + ++V     L   +AD + L Q+   +LSNA+ F+ +G  V + A   ++
Sbjct: 531 AAIPADAGGVTLEVDCPPCLPKLLADERALRQVLLNLLSNAVKFTPRGGRVTVSALREED 590

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
           G    +V++ G  IP D    +   F         +  G GLGLSI    + LHGG +S+
Sbjct: 591 GGIAITVRDTGIGIPADALARILEPFQQADSSIPARFGGTGLGLSICRDLMALHGGGLSL 650

Query: 775 SSSDEGVTTINCRIP 789
            S     T    R P
Sbjct: 651 DSEPGCGTAATIRFP 665


>gi|162456999|ref|YP_001619366.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161167581|emb|CAN98886.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 947

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 129/811 (15%), Positives = 266/811 (32%), Gaps = 78/811 (9%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
             IP+  LIR R           + +     +L K  + + +     I+        E+ 
Sbjct: 1   MTIPLSTLIRTRR---------EAIIERFVGELRKRSAAVRDMPKPLIINSLPSFLDEVA 51

Query: 97  GQLHQRIDIPQTDTDLLSFE--NWLKFHHYIKLSKATEKLRKEG-QSFDLVAETQNDCAI 153
             L QR     +           W        + +    LR+   +  +    T +   I
Sbjct: 52  ASLEQRASTAGSKEAAREHGEMRWEHGLDLGVMVREYGVLRQSILREMEEAGITPDLREI 111

Query: 154 KIEG-RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV-WHRDQ 211
           +    RV    A   +     +  E  ET  +  ++    S    L       + + +  
Sbjct: 112 EALSERVDAGIAQA-VSEHTRLQLEAIETERRRTEIERGRSG--SLLSQAPAPICFLKGA 168

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET------ 265
           A     AN  + +    + ++ +  +    +L  + +  ++ +  A  +    +      
Sbjct: 169 ALVFELANPLFCRMVGRDDLLGKPLVDAVPELRGQPLHAQLEAVLASGEPSVASEIPVRI 228

Query: 266 VSTLEHGNNKSYKI-----VRVLNS-FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
                    + Y +       V  +  G    A DV+++I    +       L     ++
Sbjct: 229 TRWTGETVERLYNVLCKPVHDVGGAVEGVMVTAFDVTEQIGARRKAERLALELQQ---SV 285

Query: 320 AI-FDQNRYLQFHNRSFVELWEIDLAF-------LATNPSNDELLEFLRS------ANKL 365
           A      + L+ +   F +               L     ++   +  R          L
Sbjct: 286 AQRLRAEQALRVNEERFRKALRGSPVMVFTQDRDLRYTWMHNSFGKSEREVLGKTDGEVL 345

Query: 366 PEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFE 417
            +    ++       V  S     ++      G+T H+ V+  P         G      
Sbjct: 346 EDPEAARSLDRTKRDVLASGVGQRREIAVRAGGRTQHIDVSIEPLADDTGEIIGITCTAT 405

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPDGRI-----KLSNPAFRSLWK 468
           ++T +  +E              +   +G  +        G I        NPA   +  
Sbjct: 406 DITERKSIEQALRASEARFRTVQEASPDGFMMLRSVRDASGAISDFEWVYVNPATGPIVG 465

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                L     +  +  +       +  +D +A ++ + +  R  L    E    +    
Sbjct: 466 GRGKDLEGKRLLVEVPGSA-----LASAFDAYARVVETGEPARIELSCAHEGAPRTFRAI 520

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERAL-----TEKNEALRKADEIKNSFVQHVSYELRSP 583
           ++            +       AERA          +   + + +K+ F+  VS+ELR+P
Sbjct: 521 AVALGDGVGLSFHDITEQKRADAERAQLLDQEQRARQHAEQLNRLKDEFLATVSHELRTP 580

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +I+G+  +L+T ++ + + +  + +  I  ++     L+ D+LD +T+ AG ++L   
Sbjct: 581 LQSILGWARILRTGEVDAESLE--RGLATIERNAKAQSQLIEDVLDASTILAGKLQLRTD 638

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + +  +L      +        + +       +G F+ D +RL Q+   +L+NA+ F+ 
Sbjct: 639 PVDVRQVLATALDLVRPAALAKGVAVDTSVADDVGIFLGDAERLQQVVWNLLANAVKFTP 698

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            G  V   A R        V++NG  IP+     +F RF            G+GLGL+IV
Sbjct: 699 SGGQVRALARRVEATLEVEVEDNGEGIPKSFLPFLFERFRQADGGMTRAHGGLGLGLAIV 758

Query: 762 ESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
                  GG V   S  +        R+P +
Sbjct: 759 RHLAEAQGGSVHAESDGEGKGARFRVRLPIR 789


>gi|219849612|ref|YP_002464045.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543871|gb|ACL25609.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 596

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 159/369 (43%), Gaps = 18/369 (4%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            + L   +   +D +S+ + V     R+   NPA +      +     G  +  +A T  
Sbjct: 231 LDLLPAARDAIVDQISDAIIVVDRHDRVLDLNPAAQLF--FADQTAVIGQPLTVVAPTW- 287

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                     L+  +   ++ + +  Q T E +    L  + +       M     + D 
Sbjct: 288 ----------LYEQVRDRYEGQFELNQPTSEGMLTYDLRCTTLRDRRGMAMGRIFVLRDI 337

Query: 549 ---VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
               +A  AL +  EA   A++ K++F+  +S+ELR+PLT I+G++++++        + 
Sbjct: 338 TLLKQAALALQKAKEAAEAANQAKSTFLAMMSHELRTPLTAILGYSEVIRDDLQIRGQND 397

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               ++ +  +   LLNL+NDIL+LA ++A  +++    + L +++ EV  +       N
Sbjct: 398 LIADLDRVVLAGRHLLNLINDILELARLEANSLQVYPEPLHLAEIVTEVVSTSHGLAQRN 457

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
              + V  +  L    AD  RL Q+   ++ NA  F+ +G   +   +   G     V +
Sbjct: 458 QNTLTVTVEPNLPPVKADPTRLRQVLLNLIGNACKFTEQGQIHVRCYSPQPGIIQIDVSD 517

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +   S+F  F+   +    +  G GLGL+I        GG + + S  +  +T
Sbjct: 518 TGIGIPPEQLASLFQPFMQVDNGTTRRYGGAGLGLAISRRLCQAMGGEIVVESEPQRGST 577

Query: 784 INCRIPSKE 792
            + R+P  +
Sbjct: 578 FSVRLPVAD 586


>gi|320103390|ref|YP_004178981.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
 gi|319750672|gb|ADV62432.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
          Length = 622

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 10/252 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R    L + N AL + + +K+ F+  +S+ELR+PL +I+GF+++L  S    L+ K 
Sbjct: 302 DLDRKVDELAQANLALYEMNRLKSDFLATMSHELRTPLNSILGFSEVLAGS--DQLSEKH 359

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++   I  S  +LL ++NDILDLA +++G M++        DL   +   +       N
Sbjct: 360 RRFANNIMTSGRMLLTMINDILDLAKIESGKMEVRIENCSARDLCESLAAVMRDAFEAKN 419

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +K + D +L     D  ++ +I S +LSNA+ F+ +G  V L+   +    +  V++ 
Sbjct: 420 IDLKCVIDDQLPLIRQDPGKVKRIVSNLLSNAVKFTPEGGRVELRVFAEGRFLVIQVEDT 479

Query: 727 GSSIPEDMCKSVFNRFVSNAH--------RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           G  I  +  +++F +F   A           + +G GLGLSIV     L  G + + S  
Sbjct: 480 GIGIAPEDQEAIFEKFRQLAQPQRDDAVLTREHQGTGLGLSIVRELCRLLEGDIKLVSQP 539

Query: 779 EGVTTINCRIPS 790
              +    R+P 
Sbjct: 540 GLGSIFTVRLPL 551


>gi|303327943|ref|ZP_07358382.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302861769|gb|EFL84704.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 825

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/559 (16%), Positives = 191/559 (34%), Gaps = 81/559 (14%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--LAFLATNPSNDELLEFLRSAN 363
               + L    +A +++D +  +   N + V L+ +    +FL        L    +   
Sbjct: 130 ERLRQCLDAAPIAYSLWDAHMRVVDCNEAAVRLFGLPDKQSFLK---RFFALSPERQYDG 186

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
            L E    +  ++     + +           +   + V +      G  ++   +    
Sbjct: 187 SLSEATILQKLRQAFVEGH-AKFPWTHCTITGDPMPVEVSLERLEIRGECYVASYVYELR 245

Query: 424 D---LETKYNTLVKVQG------ETIDHLSEGVAV------------------------- 449
           +   LE       +           +++ +E + +                         
Sbjct: 246 EIRRLEEALRKRNEDLRHSNSLLRVVNNAAEMLLLGEDNDEIGGMAYRMLAALGTAARAD 305

Query: 450 --------FGPDGRIKLSNPAFRSLWKTEENR---LSPGTHIRNIAATCSRYYNESDGWD 498
                    G DGR+   +  +         +   L       +      R + E     
Sbjct: 306 RAYVWANRVGEDGRL-YCDQLYEWSGGAIPQQRKELVRNVSYDDAMPDWKRAFGEGRVVA 364

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLE----YSIIPLPNAQTMLTFVNVTD------- 547
                ++  + E    QG L LL   +L     +  I L +      +    +       
Sbjct: 365 GLVREMSPKEREVLEPQGILSLLVTPILLDGGVWGFIGLDDCHREREWNCAEEEALRAAG 424

Query: 548 --------SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                        RAL    E        K+ F+  +S+E+R+P+  I+G   LL  +  
Sbjct: 425 ILLGASIRRRELNRALRLAKEEAEAGTRAKSDFLARMSHEIRTPMNAILGMCHLLLNT-- 482

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+ +Q  Y+     ++  LL+++NDILD + +++G   +  +   L ++L+ ++    
Sbjct: 483 -GLSEQQRDYLCKTRQAARNLLDIINDILDFSKIESGKFDVETAPFPLAEMLDGIRNVAG 541

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG 717
            +  E  IR+ V +   +    V D  R+ Q+   ++SNA+ F+ +G   V +       
Sbjct: 542 VRAAEKGIRLSVAASPDMPGELVGDALRVSQVLINLVSNAVKFTERGEVAVSVSPRHRRE 601

Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
           D    +F V++ G  +  +    +F  F         +  G GLGL I +  + + GG +
Sbjct: 602 DSLLALFEVRDTGIGMSREEVARIFRPFTQTDTSITRRYGGTGLGLVICKELVEMMGGKI 661

Query: 773 SISSSDEGVTTINCRIPSK 791
           S+SS     +     +P K
Sbjct: 662 SVSSEPGRGSIFCFELPFK 680



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 98/315 (31%), Gaps = 43/315 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            ++    + T E+L      + I D  + + F         E+   F A    +  +  F
Sbjct: 4   TSLRGAHSGTGEVLRLFPCPLIILDMEQRVLFAGP------ELPPPFSA---DHFPVGGF 54

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-----TLHVIVTSNPRGGTI 413
             +A   P++ ++    E       + +  +    +  G       L +++         
Sbjct: 55  FGAALNGPQRKSFHAAWETAL----AGKAAEILLAMGGGAQERFFFLRLVMRRVAGELCC 110

Query: 414 WM-FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           W+   ++T      ++  +L +   + +D      +++    R+   N A   L+   + 
Sbjct: 111 WLMLHDVTSFRAHASE--SLSERLRQCLDAAPIAYSLWDAHMRVVDCNEAAVRLFGLPDK 168

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSI 530
           +           +   +Y        +   +  +F +       T   ++     +E S+
Sbjct: 169 QSFLKRFFA--LSPERQYDGSLSEATILQKLRQAFVEGHAKFPWTHCTITGDPMPVEVSL 226

Query: 531 IPLPNAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             L              + +  R E AL ++NE LR ++ +               L  +
Sbjct: 227 ERLEIRGECYVASYVYELREIRRLEEALRKRNEDLRHSNSL---------------LRVV 271

Query: 588 IGFTDLLKTSKLGSL 602
               ++L   +    
Sbjct: 272 NNAAEMLLLGEDNDE 286


>gi|56422008|ref|YP_149326.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56381850|dbj|BAD77758.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 609

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 160/386 (41%), Gaps = 28/386 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + H+++GV      GR+ L N A  ++  
Sbjct: 238 GQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLE 527
                +   + I ++     +Y  E+   +  + I+  S D+E   L+ +L         
Sbjct: 298 VSRETVLS-SSIVDVLGIADQYTFETLLEERDSLILDFSTDEELYILRASL--------- 347

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S+I           V + D    E           K D  +  FV +VS+ELR+PLT +
Sbjct: 348 -SVIQKEGGFVNGLIVVLHDITEQE-----------KIDRERRQFVANVSHELRTPLTTM 395

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + + L        +    ++++ +   +  ++ LVND+L L+ +D+   KL  + I  
Sbjct: 396 KSYLEALADGAWQDKDI-APRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWINF 454

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +   ++V          +NIR       +      D  ++ Q+   I+SNA+ +S +G T
Sbjct: 455 SAYFHKVIDRFE-LTKSDNIRFVRKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGGT 513

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           +  +  +   + I SV + G  IP+     +F RF        R   G GLGL+I +  +
Sbjct: 514 ITFRVRKLADEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKEVV 573

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
             HGG +   S +   TTI   +P +
Sbjct: 574 LAHGGTIWAESKEHKGTTIYFTLPLE 599



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N + + +  +    + ++   D L
Sbjct: 253 EAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIVDVL 312

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                    + +Q  ++T  E   S+     T ++ + L    ++ +        G I +
Sbjct: 313 G--------IADQYTFETLLEERDSLILDFSTDEELYILRASLSV-IQKEGGFVNGLIVV 363

Query: 416 FENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEG 446
             ++T Q  +D E +           T +      ++ L++G
Sbjct: 364 LHDITEQEKIDRERRQFVANVSHELRTPLTTMKSYLEALADG 405


>gi|256751996|ref|ZP_05492865.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749106|gb|EEU62141.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 361

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 149/364 (40%), Gaps = 22/364 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N         +  +  GV  F  + +I L N A R +   +E  L  G HI  I   
Sbjct: 10  EELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDL-IGRHILEIVR- 67

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  S   D F  +  + +   KSL+  +      V    I+   + Q +   + + 
Sbjct: 68  ------NSKLHDFFEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIID 121

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     R            ++I++ FV +VS+ELR+PLT+I GF + L+   + +  ++ 
Sbjct: 122 DITEMRRL-----------EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQAR- 169

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++ I   S  L  L+NDIL L+ ++          I L++ + ++   +       N
Sbjct: 170 DKFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKN 229

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +K   +        ++ R  Q+   ++ N + ++ +G  V +    +    I +V++N
Sbjct: 230 ITLKKDLNCTDLVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIITVEDN 289

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F RF        R   G GLGL+IV+  +    G + + S     T  
Sbjct: 290 GIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKF 349

Query: 785 NCRI 788
             + 
Sbjct: 350 IIKF 353



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 23/227 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +ND+      IL ++   +  FD N  +   N +  ++  I    L        +LE 
Sbjct: 10  EELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDLIGRH----ILEI 65

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +R++        ++  K+N  S  KS E +    HL    +  +   S+   G + + ++
Sbjct: 66  VRNSKL---HDFFEDVKKNKNSPSKSLELNVFNKHLKVYTSPILHPISHQNLGFVLIIDD 122

Query: 419 LTVQVDLETKYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +T    LE   +  V          +  +  G      +G I   NP  R          
Sbjct: 123 ITEMRRLEKIRSEFVANVSHELRTPLTSIR-GFIETLRNGAID--NPQARD--------- 170

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                I   +   +R  N+         +   +  E   L   +E +
Sbjct: 171 KFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDI 217


>gi|312129290|ref|YP_003996630.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311905836|gb|ADQ16277.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1288

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 119/638 (18%), Positives = 254/638 (39%), Gaps = 51/638 (7%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
            + KKL N    F+  F+     +   D  G IL  N   ++    E +   +   + + 
Sbjct: 272 EEKKKLENSERRFRKFFEKAIGYMSMHDMTGKILAVNEKGRQQLGYEALDLSQM--KLQD 329

Query: 243 LFKEEIKKR----MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-----GIAI 293
           L  E+        +      +++    V   + G+   +    +L    +        A+
Sbjct: 330 LLPEKHLPEYNEYIKRIYKNKEDSGMMVLKTKSGDETYWLYNNILERDSQQNPYVISTAL 389

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAI-----FDQNRYLQFHNRSFVELWEIDLAFLAT 348
           ++++ I +   L +T EIL   +  +A       D      F +++   +  +   F   
Sbjct: 390 NLTERINLEKDLLYTKEILERTSQ-VARVGGWELDCQTGKMFWSKTTRIIHGVGPDF--- 445

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTS 406
             + +  L+F        E+ + + +   +    +    +         NG+ + V +  
Sbjct: 446 EVNEENALDFF-------EEEDREKFLNIVSKAKEEGTPYDVELRILRTNGEKIWVRLQG 498

Query: 407 NPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            P            + +++     +  +      +    + H+   VA+   +     ++
Sbjct: 499 YPDIEKGKCRRIYGILQDIDSLKRMLLEIQEKEAMLSSFVKHVPAAVAMLDLNLNYISTS 558

Query: 461 PAFRS-LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG--T 517
             +R   +   EN +S    + ++      Y  E     +      ++ DE   +QG   
Sbjct: 559 KRWREEFFGGGENPVSQ--SLFSLFPGMPDYLKEIYYKAVEGTPYKNY-DEVVVVQGKDE 615

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            +     V  +          +++ +N T+S+  ++ L E  ++  +A+  K+ F+ ++S
Sbjct: 616 PQHYYWEVRPWKYADDRIGGVIVSALNNTESIAIQKELKEAMKSAEQANAAKSQFLANMS 675

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  +IGF+DLL  +    LN+ Q QY+ YI+ S + L+ ++NDILD + V+AG 
Sbjct: 676 HEIRTPLNGVIGFSDLLLKT---PLNATQRQYLNYINESGSSLMQIINDILDFSKVEAGK 732

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
           M+L+ +   + DL ++V   +  +    NI + +     L  + + D  R+ Q+   +L 
Sbjct: 733 MELDEAFHSIYDLSDQVINVVMYQAQVKNIELLLDVQHGLPAAVLLDEARVKQVLVNLLG 792

Query: 697 NAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-- 750
           NA+ F+ +G   +    +          F V++ G  IPE+  + +F+ F          
Sbjct: 793 NAVKFTEEGEVELAVRQISRTDKEIGLRFLVRDTGIGIPEEKKERIFDAFTQEDSSISKR 852

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I  S +   G  + + S     +T    +
Sbjct: 853 YGGTGLGLTISNSILKHMGSKLYLESEVGWGSTFYFDL 890



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 89/274 (32%), Gaps = 21/274 (7%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +        + ++IL      + + D +  ++  N +F  L+ +            +   
Sbjct: 157 QKQSRVHADYYHKILSITNNLVLVLDTDLQIKKVNPAFESLFNMGQKVARGK----DFKA 212

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF- 416
             + +   P     K   E+ F    +++  K          +   +    +   I+ F 
Sbjct: 213 LFKESENWPNDYPLKLASEDGFYFTSTTDQPK--------TIIQWRLKREEQFNEIFCFG 264

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            N+T +V+ + K     +   +  +     +++    G+I   N   R     E   LS 
Sbjct: 265 RNVTQEVEEKKKLENSERRFRKFFEKAIGYMSMHDMTGKILAVNEKGRQQLGYEALDLSQ 324

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                 +       YNE         I  + +D    +  T        L  +I+   + 
Sbjct: 325 MKLQDLLPEKHLPEYNE-----YIKRIYKNKEDSGMMVLKTKSGDETYWLYNNILERDSQ 379

Query: 537 Q---TMLTFVNVTDSVRAERALTEKNEALRKADE 567
           Q    + T +N+T+ +  E+ L    E L +  +
Sbjct: 380 QNPYVISTALNLTERINLEKDLLYTKEILERTSQ 413


>gi|168180831|ref|ZP_02615495.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182668359|gb|EDT80338.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 702

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/507 (19%), Positives = 205/507 (40%), Gaps = 17/507 (3%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA-FLATNPS 351
           ID+ ++  + D + +   +++N++  I +FD++  L   N++  ++ E+ +   L     
Sbjct: 170 IDILRKKEL-DYIKYLNNVINNISEGILVFDKHSKLILWNKAIEQIGEMKIKKILDIKEI 228

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG- 410
            +E   ++   +K    + +K  K N        +           +  ++   SNP   
Sbjct: 229 INEYDIYILDDHK---NMKYKIKKMNPDYNSSVKDLLLKLVKKDTNKIKYIEYNSNPIMD 285

Query: 411 ------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAF 463
                  TI   +N+T  ++ +       +     +D +   +AV   PD   KL N  +
Sbjct: 286 ENNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYKLVNERY 345

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L +    +   G    N      R     +  ++   +      E         L S 
Sbjct: 346 EELVERLHTKKIKGNLFGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSG 405

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
               + +  + +       V++  S   E    + N  L K +++K+ F   +S+ELR+P
Sbjct: 406 EERFFKVRYIYHETKNKKRVHIHGSDVTEE--FKSNLELEKVNKLKDEFFTIISHELRTP 463

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT I     L        +N    + ++ I+ ++  LL L+N+ILD++  +AG + LN  
Sbjct: 464 LTIIYSSLQLAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNE 523

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +      +  SI    +  NI +   +  +      D+ +  +I   +LSNA+ F+ 
Sbjct: 524 YFDIVLETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTP 583

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
           +  ++ +       +F   VK+ G  IP++    +FNRF    ++      G G+GLS+V
Sbjct: 584 ENKSIYVTLKIYKNNFKLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLV 643

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++L  G + + S     TT   +I
Sbjct: 644 KKIVDLMDGEIKVYSILGKGTTFTVKI 670



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 418 NLTVQVD--------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           N++ Q+         L  K    +K     I+++SEG+ VF    ++ L N A   + + 
Sbjct: 158 NISKQIKNKSEIIDILRKKELDYIKYLNNVINNISEGILVFDKHSKLILWNKAIEQIGEM 217

Query: 470 EENRLSPGTHIRN 482
           +  ++     I N
Sbjct: 218 KIKKILDIKEIIN 230


>gi|298249186|ref|ZP_06972990.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547190|gb|EFH81057.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 845

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/639 (16%), Positives = 232/639 (36%), Gaps = 64/639 (10%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-R 241
               +  +     + L D+L  LVW     G + + N    +  +   +  ++A G+   
Sbjct: 238 RDITERKHAEDELRTLVDALPQLVWIARPDGYVTYHNQ---RLIDYMAMTLEQAEGDGWL 294

Query: 242 KLFKEEIKKRMISS------SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------A 289
                + ++R+ ++      + +       +     G  + + +  +     +       
Sbjct: 295 ASVHPDDRQRVRAAWQTSIQTGVPYEVELRLQDGTSGAYRWFLVRGMPQRNAQGTILHWV 354

Query: 290 GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G   D+  +     ++  + E    +   +   +     +  + + N+ + +L + D   
Sbjct: 355 GTCTDIDDQKRAEQRIKESEENWRVLAETVPQLVWTTRPDGRVDYCNQRYCDLTQAD--- 411

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                  ++L ++       PE      T ++   +  +  E  +       G+    + 
Sbjct: 412 ------FEQLRDYRWRQFLHPEDAERALTLRQQSLATGELFENEQRLRDGQTGRYRWFLA 465

Query: 405 TSNP---RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            + P     G I        ++  Q  +E       +     ++    G+ +   + +I 
Sbjct: 466 RALPVRDEAGQIDKWFGTCTDIDDQKRMEEALRESQERVNILMNSSIIGIFL-AEEEQIV 524

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII---TSFDDERKSL 514
             N  +  +       L  G  I  +  T  +Y   +        +    T ++ E    
Sbjct: 525 DVNDTYLRMTGYTREDLQAGN-INWMRMTPPKYLARTQQARQELVVQQYGTPYEKEYVCK 583

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G+L  +   V+     PL     +L          A + L          ++ K+ F+ 
Sbjct: 584 DGSLLPVVVGVVALRRDPLHTIGFVLDNS-------ARKEL----------EQRKDDFIS 626

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             S+ELR+PL  +     L++       + + +  +  +      L  L+ ++LD++ + 
Sbjct: 627 MASHELRNPLAALKMQIQLVRKRLERQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQ 686

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG ++    T+ L+ LL+EV  ++      + I   V+        V D+ RL Q+F+ +
Sbjct: 687 AGRLEYLQETVDLDALLHEVADTMQQLSTTHTI---VVRGAAPRVLVGDKDRLGQVFTNL 743

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           LSNA+ +S    TV +  +         V ++G  IP +    +F RF   A   Q+   
Sbjct: 744 LSNAIKYSPGAETVEMDLSASEETVTVRVHDHGLGIPREQRDKIFERFYRVAGPKQKAIP 803

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G+G+GL IV   +  HGG +++ S+    +T    +P K
Sbjct: 804 GLGMGLYIVAEIVKHHGGTLTVDSAVGKGSTFTVTLPCK 842



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/381 (13%), Positives = 116/381 (30%), Gaps = 37/381 (9%)

Query: 200 DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK-AIGESRKLFKEEIKKRMI--SSS 256
           ++L   ++  D    I++AN S +  T T     ++ +              + +  +  
Sbjct: 16  ETLPDALFVVDDTETIVYANASAQAITGTTPEELRRNSFWRCVPRLVSTPLYQAVQKAKQ 75

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEIL 312
             E    E VS + +       +       G A +  +  +     D L+       ++L
Sbjct: 76  TREPTEVEYVSPVTN---TWLHVSLSPTDEGLALLFQENLEPPHFQDALSRNEQMYRDLL 132

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            + +  + I   +  +   N+       +  A L         L  L + +  P      
Sbjct: 133 ESFSDGVTIVTPDGLVLDINQR-----PLADAHLRREQVVGTPLTDLPAWSSDPAVQEHL 187

Query: 373 TWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNPR-----GGTIWMFENLTVQVDLE 426
                  +  ++           +    + + +T++          I    ++T +   E
Sbjct: 188 RAAIARAARGETVRFEAKIHPRLDLSLAILMTITAHRDASQQVEYLICAGRDITERKHAE 247

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +  TL       +D L + V +  PDG +   N            +      + ++   
Sbjct: 248 DELRTL-------VDALPQLVWIARPDGYVTYHNQRLIDYMAMTLEQAEGDGWLASVHPD 300

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLT 541
             +    +  W         ++ E +   GT    +        +P  NAQ      + T
Sbjct: 301 DRQRVRAA--WQTSIQTGVPYEVELRLQDGT--SGAYRWFLVRGMPQRNAQGTILHWVGT 356

Query: 542 FVNVTDSVRAERALTEKNEAL 562
             ++ D  RAE+ + E  E  
Sbjct: 357 CTDIDDQKRAEQRIKESEENW 377


>gi|255033986|ref|YP_003084607.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254946742|gb|ACT91442.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 868

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/397 (26%), Positives = 183/397 (46%), Gaps = 22/397 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE- 470
            I++  +   Q  L+ +     +   + ++ + +GV V   + +I+L N + R +   + 
Sbjct: 205 IIFLNLDKRKQRLLQNEIKERERTVSQYLEAIPDGVMVINSERKIELINESGREILGVDG 264

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEY 528
           E   +    +  I       Y+     D    +  +   E+ +      + +D +  LE 
Sbjct: 265 ERPATLEEQVTRIKLLDPTRYHVRFSADTL-PVARALQGEKLTGNKIDLVKNDKIYHLET 323

Query: 529 SIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           S+ P+          +  F ++T+    E  L +      K+  +K+ F+ +VS+E+R+P
Sbjct: 324 SVQPVIGLDGRIKSAITVFRDITERANYEATLEKARSLAEKSVRVKDIFLSNVSHEIRTP 383

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIGFT+LL        + K  +YV YI  +   LL L+NDILD + ++AG + L  +
Sbjct: 384 LNAIIGFTNLLMGEV---TDQKSQEYVGYIQYAGKNLLELINDILDFSKIEAGQVHLEKA 440

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            + + +L +E+   +  +  E  I  + +++DG       D+ RL QI   +  NA+ F+
Sbjct: 441 PVSIRELADEISAIMHHRAVEKGIVYEALLADGLPEFIETDKLRLTQILLNVCGNAVKFT 500

Query: 703 SKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
            KGS V L+ A       D  +  F VK+ G  IP+D  K VFNRFV       R   G 
Sbjct: 501 EKGS-VKLRVAPIGEPLNDVQNIRFEVKDTGVGIPKDKLKEVFNRFVQATESTTRVFGGT 559

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGLSIV+S + L  G +++ S     T      P +
Sbjct: 560 GLGLSIVKSLVQLFEGTLNLESELGQGTVFTMDFPFR 596


>gi|298246973|ref|ZP_06970778.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549632|gb|EFH83498.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 796

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/648 (16%), Positives = 233/648 (35%), Gaps = 58/648 (8%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            +  E+AE     ++L      F+VL +++  LVW     G   + N  +   T +    
Sbjct: 176 ALRIEIAEHQQVTERLQESEQNFRVLSETVPQLVWTMFPNGRRDYVNQRWCDYTGSTRER 235

Query: 233 FQKAIGESRKLFKEEIKKRMIS----SSALEKNFCE--TVSTLEHGNNKSY--KIVRVLN 284
            Q       +    + ++   +    +    + F     +     G  + +  + + V N
Sbjct: 236 MQSDRWAHFQFIHPDDREGNRAFWQHALQTGEPFESEHRLRNGHTGTYRWFLARAMPVRN 295

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFV 336
             GE     G A D+ ++     QL  + E    +   +   +     +   ++ N+ + 
Sbjct: 296 ETGEIVKWFGTATDIDEQKRAEQQLKESEENWRVLAETMPQLVWSTGPDGVHEYTNQRWR 355

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           +   +    +  N           +  +L    + +  +        +   ++    L N
Sbjct: 356 DYTGLTPEQVQNNRW---------AHLQLIHPDDREGTRALWQHALDTGAMYEHEERLSN 406

Query: 397 GQT-------LHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           GQT       +  +   +  G  +  F    ++  Q  ++       +     ++    G
Sbjct: 407 GQTGAYRWFLVRAMSIRDEAGQIVKWFGTCTDIDDQKRMQEALRESQERASVLMNSNIIG 466

Query: 447 VAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           + V   +G +I  +N  F  +       L  G           R+    +          
Sbjct: 467 IFV--EEGEQIVDANDTFLRMTGYTREDLRAG-------RINWRHMTPPEYLARTQQAHQ 517

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
               ++       E +     + S +P+     +     +             N A ++ 
Sbjct: 518 ELATQQSMTPYEKEYVCQ---DGSRLPVLVGGIVFQHHPLQAIT-----FVLDNSARKEL 569

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+   S+ELR PLT +   T LL+           +  +  +      +  LV 
Sbjct: 570 EQRKDDFISMASHELRGPLTALKLQTTLLRRQLAKQGTQASAPALSSMETQINKVTRLVE 629

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++LD++ + AG ++    T+ L+ LL E+ +++      + + ++      L   + DR 
Sbjct: 630 ELLDVSKIQAGRLEYVQETVDLDALLREITETLQQSSPSHTLVVRGTGGTGL---IGDRD 686

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL Q+F+ ++SNA+ +S    TV +  +         V ++G  IP +    +F RF   
Sbjct: 687 RLGQVFTNLISNAIKYSPNAETVEMDLSASEDAVTVCVCDHGLGIPREQRDKIFERFYRV 746

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +   Q+   G+G+GL IV   +  HGG +++ S     +T    +P K
Sbjct: 747 SGPNQKAIPGLGMGLYIVAEIVRHHGGSITVESEVGKGSTFQVTLPMK 794



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/427 (12%), Positives = 127/427 (29%), Gaps = 55/427 (12%)

Query: 42  ILLIRQRNSLAKKVNETYSFLSEICDQLSK-------YHSLLTENNCLTIVWD-----GK 89
           I ++R+  S           ++E      +       +  L        +VW       +
Sbjct: 161 IGIVRELASFVTTEIALRIEIAEHQQVTERLQESEQNFRVLSETVPQ--LVWTMFPNGRR 218

Query: 90  DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
           D   +                    F  ++            +   + G+ F+     +N
Sbjct: 219 DYVNQRWCDYTGSTRERMQSDRWAHF-QFIHPDDREGNRAFWQHALQTGEPFESEHRLRN 277

Query: 150 DC-------AIKIEG-RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
                      +    R              G  +++ E     ++L      ++VL ++
Sbjct: 278 GHTGTYRWFLARAMPVRNETGEIVKWF----GTATDIDEQKRAEQQLKESEENWRVLAET 333

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS------S 255
           +  LVW     G   + N  ++  T       Q       +L   + ++   +       
Sbjct: 334 MPQLVWSTGPDGVHEYTNQRWRDYTGLTPEQVQNNRWAHLQLIHPDDREGTRALWQHALD 393

Query: 256 SALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTY 309
           +       E +S  + G  + +  + + + +  G+     G   D+  +  + + L  + 
Sbjct: 394 TGAMYEHEERLSNGQTGAYRWFLVRAMSIRDEAGQIVKWFGTCTDIDDQKRMQEALRESQ 453

Query: 310 EILHNL--TVAIAIFDQNR-YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
           E    L  +  I IF +    +   N +F+ +       L     N      +      P
Sbjct: 454 ERASVLMNSNIIGIFVEEGEQIVDANDTFLRMTGYTREDLRAGRIN---WRHMTP----P 506

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTIWMFENLTV 421
           E L          +  +S   ++  +   +G  L V+V       +P     ++ +N + 
Sbjct: 507 EYLARTQQAHQELATQQSMTPYEKEYVCQDGSRLPVLVGGIVFQHHPLQAITFVLDN-SA 565

Query: 422 QVDLETK 428
           + +LE +
Sbjct: 566 RKELEQR 572


>gi|323706156|ref|ZP_08117724.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534449|gb|EGB24232.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 565

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 163/393 (41%), Gaps = 44/393 (11%)

Query: 400 LHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIK 457
           +H+ + S+   G +  MF  ++ ++          K +    I ++S+GV       RI 
Sbjct: 211 VHINIRSDDEIGKLGSMFNFMSKRLKTTLNEMENEKSKVEAIISYMSDGVIATNDLNRII 270

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L N A   +      +L+    I  IA    +  N          I+ SF          
Sbjct: 271 LFNDAAEKMIGE---KLAMDEPIEKIAQ--GQLKNTESLIFCNGKILKSF---------- 315

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                       + P+   + +   V V   +  ++ L          D ++  FV +VS
Sbjct: 316 ------------VSPIKVDKNIDGNVFVLHDITEQQNL----------DNMRKEFVANVS 353

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT I  +T+ L     G  +  +++++  I      +  LV D+L L+ +D+  
Sbjct: 354 HELRTPLTTIKSYTETLLND--GVDDEMRNRFLYIIDKEVDRMTRLVKDLLLLSRMDSNG 411

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            KLN +   LN+ + EV   I  +  + N ++   +  +  +   D+ ++ Q+   I+SN
Sbjct: 412 -KLNLTEANLNEFVEEVLYKIKIEAQKKNQKLLFCAGEEKRNVNIDKDKMEQVILNIVSN 470

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           ++ +++ G  V +     +      V +NG  IP+     +F RF        R   G G
Sbjct: 471 SIKYTNPGGYVRVFTKYLDDYAYIVVNDNGIGIPKKDLPRIFERFYRVDKGRSRELGGTG 530

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +  HGG ++I S     TT+  ++
Sbjct: 531 LGLAIAKEIVTAHGGEINIESEIGVGTTVTVKL 563


>gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1258

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 154/373 (41%), Gaps = 17/373 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     +  + EG+     DG +   NPA   +     + +  G  +  +A   
Sbjct: 467 QLAEAEERSRLILGSVDEGICGLAQDGTMSFVNPAGARMLGYGLDEIV-GKPLHALAHHT 525

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTML----T 541
                          + +     R  +   L     +   +EYS  P+    T++    T
Sbjct: 526 YPDGTPFPRECCSMFLTSQDGQPRTEVDEVLWRKDGTSFPVEYSTTPVLKDGTVVGTVVT 585

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T+  RA+  L +  +    A + K  F+ ++S+E+R+P+  IIG + L   ++   
Sbjct: 586 FRDITERKRADALLHQALDRAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTE--- 642

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN +Q  YV  I  S   LL ++NDILD + ++AG + +  + + L+ +L+ V   I+ K
Sbjct: 643 LNPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEK 702

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD- 718
                + +       + +  V D  RL QI     +NA+ F+  G  V+ ++ A D G+ 
Sbjct: 703 TIAKGLELIFDVASDVPNDMVGDPLRLGQILINYANNAVKFTETGEIVVAVRLAEDLGEA 762

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
               F V++ G  +  +    +F  F        R   G GLGL+I      L  G V +
Sbjct: 763 VRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGV 822

Query: 775 SSSDEGVTTINCR 787
            S     +T    
Sbjct: 823 ESQPGRGSTFWFT 835



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 76/230 (33%), Gaps = 24/230 (10%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           ++      +   +A G + +   +     +  S  + +   +T + LE       ++   
Sbjct: 391 ERLLAVVELATLEAFGPAEQSLLDGALPVLAMSLEILERGAKTAALLEET-----RVQAA 445

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
             +  E  +A    +   +N QL    E    IL ++   I    Q+  + F N +   +
Sbjct: 446 TLAASERQVAARKEELEAINGQLAEAEERSRLILGSVDEGICGLAQDGTMSFVNPAGARM 505

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH---KDTWHLP 395
               L  +   P +        + +  P+   +     ++F   +  +      +     
Sbjct: 506 LGYGLDEIVGKPLH------ALAHHTYPDGTPFPRECCSMFLTSQDGQPRTEVDEVLWRK 559

Query: 396 NGQTLHVIVTSNP---RG---GTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +G +  V  ++ P    G   GT+  F ++T +   +   +  +      
Sbjct: 560 DGTSFPVEYSTTPVLKDGTVVGTVVTFRDITERKRADALLHQALDRAEAA 609


>gi|189467150|ref|ZP_03015935.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
 gi|189435414|gb|EDV04399.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
          Length = 806

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/508 (20%), Positives = 212/508 (41%), Gaps = 26/508 (5%)

Query: 297 KEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFVELWEI-------DLAF 345
           +       L H+ +IL N    L V I ++D++ YL   N   +E++ +        ++ 
Sbjct: 309 QAKEDRRALDHSEKILRNIYKNLPVGIELYDKDGYLVDMNDKELEIFGLADMKEALGVSL 368

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                  +++ E LR+   +   +N+   K + +   +     KD  +L     L +  +
Sbjct: 369 FENPNIPEDVKEKLRARENVDFSINYDFSKIDRYVTSRR----KDIINLQTKVAL-LYDS 423

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            N     +++  + T      TK      +     D+   G A F    R   +   +  
Sbjct: 424 QNQFSNYLFINIDTTETTSAYTKIQEFEHLFLLIGDYAKVGFAHFNVMTRDGYAQDTWYR 483

Query: 466 LWKTEE---NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
               +E        G +       C+      D      A   S +       G     S
Sbjct: 484 NLGEKENTPMPQVIGVYSHVHPEDCAVLKLFVDQVKEGKATSLSKEVRVNRGNGKYSWTS 543

Query: 523 DSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +V+     P     + +    ++T     E+ L    +   + D +K++F+ ++S+E+R
Sbjct: 544 INVMVRDYRPQDGVIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIR 603

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL +I+GF+ LL  +       ++ +Y++ +  ++ +LL LV+DILDL+ +++G     
Sbjct: 604 TPLNSIVGFSSLLAET---DDREERQEYIKIVETNNELLLQLVSDILDLSKIESGTFDFV 660

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            S + +N+   ++ +S+  K+ E  + +             D+ R +Q+ +  ++NA+ F
Sbjct: 661 RSDLDVNESCMKIIKSLEMKVPE-TVDLVFEKYMPDCHIYTDKNRFMQVITNFINNALKF 719

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           + +G+  +        +  F V++ G  IP++   S+F RFV        +G GLGLSI 
Sbjct: 720 TKQGTIALGYEQTAPHEIKFYVRDTGVGIPKEKIDSIFERFVKLNTF--VQGTGLGLSIC 777

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +S ++  GG + + S++   +      P
Sbjct: 778 KSLVSQMGGKIGVESTEGEGSCFWFTHP 805


>gi|303248516|ref|ZP_07334774.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490136|gb|EFL50056.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 676

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/504 (19%), Positives = 191/504 (37%), Gaps = 42/504 (8%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            +LT    IL  L   IA       +   N  ++ L            + D L + L + 
Sbjct: 41  GRLTRLSSILDALDQGIAFVSPEGLVMEINDRYLNLLG--------RAAEDVLGQGLAAL 92

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQT-----LHVIVTSNPRGGTIWMF 416
           +   E  +++        +++    H   ++    G       L  +       G +   
Sbjct: 93  DL--ETEDYQA--SAFLDLFRRGVAHAPVSFDRRLGVRDVTAKLQPVFDQGSLIGLLVSL 148

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T  V+             + I      + +   D  +   N  F ++     +    
Sbjct: 149 IDVTPLVEARLSVEREKSFLEQVITIAGAAICIVNRDDVVVTINDEFTAITGYSRD---- 204

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
               + +    +    ES      A      +   +  Q  +       L       P  
Sbjct: 205 ----QALGRERAGLLRESPPSPCPAKPARPGNGAVQKRQSQILTRDGQRLTILKNAAPIL 260

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               T     +S     +L        +A  +K++F+ ++S+E+R+PL  I+G T +L+ 
Sbjct: 261 DATGTPTGGIESFVDVSSLIRARVEAEEASRMKSAFLANMSHEIRTPLNAILGLTQILRK 320

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +L  +Q   V+ + ++   LL ++ D+LD + ++ G +++  + + +  LL E ++
Sbjct: 321 T---ALTDEQRDCVDTMRSAGEGLLVILGDLLDFSRMEVGRLEIRPAPMDIERLLEETRR 377

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +     E  + + +  D  L    V D  RL QI   +LSNA+ F+ +G  V L A+R 
Sbjct: 378 VMEPLAAERGLTLCLERDPDLPRVLVCDPMRLKQILLNLLSNAIKFTPQG-RVTLYASRA 436

Query: 716 NG--------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
                        F+V++ G  IPE M + +F  FV +     G   G GLGLSI +  +
Sbjct: 437 REPMAYEGPVAVQFAVRDTGPGIPEGMRERIFEPFVQSDETIAGNHGGTGLGLSISDRLV 496

Query: 766 NLHGGH-VSISSSDEGVTTINCRI 788
            L GG  +S++S     ++    +
Sbjct: 497 RLLGGTGLSVTSQPGKGSSFFFTL 520



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 87/306 (28%), Gaps = 33/306 (10%)

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
           R  G     R   L  + + L +   +  +LS        + D+LD  +      G ++ 
Sbjct: 16  RRPGGFHAARRAPLPAVQAVLGDMPGRLTRLS-------SILDALDQGIAFVSPEGLVME 68

Query: 218 ANISYK----KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE-TVSTLEHG 272
            N  Y     +  E        A+    + ++      +                 +   
Sbjct: 69  INDRYLNLLGRAAEDVLGQGLAALDLETEDYQASAFLDLFRRGVAHAPVSFDRRLGVRDV 128

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYL 328
             K   +    +  G     IDV+  +     +      L  +      AI I +++  +
Sbjct: 129 TAKLQPVFDQGSLIGLLVSLIDVTPLVEARLSVEREKSFLEQVITIAGAAICIVNRDDVV 188

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              N  F  +            S D+ L   R+        +    K          +  
Sbjct: 189 VTINDEFTAITGY---------SRDQALGRERAGLLRESPPSPCPAKPARPGNGAVQKRQ 239

Query: 389 KDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
                  +GQ L ++  + P         G I  F +++  +    +     +++   + 
Sbjct: 240 SQILTR-DGQRLTILKNAAPILDATGTPTGGIESFVDVSSLIRARVEAEEASRMKSAFLA 298

Query: 442 HLSEGV 447
           ++S  +
Sbjct: 299 NMSHEI 304


>gi|193084137|gb|ACF09803.1| ammonium transporter/integral membrane sensor signal transduction
           histidine kinase [uncultured marine group III
           euryarchaeote SAT1000-53-B3]
          Length = 752

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 144/324 (44%), Gaps = 9/324 (2%)

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             N L       +I    + + + SD  DL   +    D    S++G  +L +    E  
Sbjct: 427 HYNPLRVSQEAEDIGLNIAEHDSSSDQIDLLKIMQYQNDTGDLSVRGPEDLFT----EAG 482

Query: 530 IIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            I       M +       +R ++ +L    +  + A++ K+ F+ ++S+ELR+PL  II
Sbjct: 483 QIGYHYNILMSSLEESDKIMRKQKDSLKVAMQKAQTANKAKSDFLANMSHELRTPLNAII 542

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++++L            S+ +  I +S   LL L+NDILDL+ ++AG M L+       
Sbjct: 543 GYSEMLIEEADDDGLETYSEDLAKIHSSGDHLLTLINDILDLSKIEAGKMDLHIEEFDFT 602

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +LL +++ +    + +N  +  +    K      D+ ++ QI   +LSNA  F+ KG T+
Sbjct: 603 NLLKQIEATARPLVDKNKNKFVIKCKTKKLKLKNDQTKVRQILFNMLSNAAKFTKKG-TI 661

Query: 709 ILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFI 765
            L+   +   +  F V + G  + E+    VF  F            G GLGL I +   
Sbjct: 662 TLQIKPEKKDNLRFDVIDTGIGMSEEQMDKVFEEFTQAESSTSKDYGGTGLGLPISKKMT 721

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            + GG + + S +   TT +  IP
Sbjct: 722 EMMGGKMEVKSKEGKGTTFSIIIP 745


>gi|326201973|ref|ZP_08191843.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987768|gb|EGD48594.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 512

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 127/261 (48%), Gaps = 4/261 (1%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           II   + Q  +   +  +  +   +     E L++ +E++  F+ +VS+ELR+P+T+I G
Sbjct: 245 IIAGGDFQKRIVVSSQDEIGQLADSFNHMVEDLQRLEELRRGFIANVSHELRTPMTSIRG 304

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F + +    +     +Q  Y+  +   +  L  LVND+LDLA +++G + L      +N+
Sbjct: 305 FIEGILDGTIPP--ERQKGYLTIVRDETNRLNRLVNDLLDLAKMESGELTLTMKPFDINE 362

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+      + T +   N+ I+   +       AD+  + ++   +L NA+ FS++   +I
Sbjct: 363 LIRICVIKLETLITSKNLEIEANFEIDNMMVSADKDSIERVIINLLHNAVKFSNENGKII 422

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINL 767
           ++ A++      SVK+NG  I  D  K +++RF  +       + G GLGL+IV++ +  
Sbjct: 423 VETAKNKDKIYVSVKDNGIGIDGDDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNIVTE 482

Query: 768 HGGHVSISSSDEGVTTINCRI 788
           H   + + S     T     +
Sbjct: 483 HKQDIWVESEVGKGTKFTFTL 503


>gi|257487363|ref|ZP_05641404.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330988052|gb|EGH86155.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331009038|gb|EGH89094.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 576

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 117/523 (22%), Positives = 207/523 (39%), Gaps = 63/523 (12%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE----FLRSANKLPEQLNWKTWKENI 378
           D++  +Q  N     +       +    +  ++ +     +R+A  L  +LN        
Sbjct: 51  DEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAA-ALSHELNTPITPGFE 109

Query: 379 FSVYKSSETHKDTWHL----PNGQTLH--VIVTSNPRG-----GTIWMFENLTVQVDLET 427
             V+K+S   +D + L     +G  L   V VTS         G + +  + T +   E 
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEE 169

Query: 428 -------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +           I+   + + +  P G I   N    +L     + L      
Sbjct: 170 AQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDEL------ 223

Query: 481 RNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             I A C  ++ +    D      L    ++ ++   ++  GT  ++S +   +      
Sbjct: 224 --IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRK 281

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                    +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L
Sbjct: 282 LKGVFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEAL 341

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L    + L +LL+  
Sbjct: 342 KDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNS 401

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +     I++K+ ++   G    DR++  QI   +L+NA+ FS  G  V L   +
Sbjct: 402 LLIVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQ 461

Query: 715 D------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
                                          SV + G  I +     +F  F        
Sbjct: 462 VSFAQAGVIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLA 521

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 522 RKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 564


>gi|158333667|ref|YP_001514839.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158303908|gb|ABW25525.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 768

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/537 (20%), Positives = 210/537 (39%), Gaps = 61/537 (11%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
               +    IL +    I   D N  +Q  N   ++ +      +    +     +    
Sbjct: 11  QHSQSWQQAILDSADFVIVSTDINGLIQTLNAGALKQFGYSPEEIIDRVTPIIFHD---- 66

Query: 362 ANKLPEQLNWKTW-------------KENIFSVYKSSETHKDTWHLPNGQT------LHV 402
               PE++  +                E +    +     ++ W L           L V
Sbjct: 67  ----PEEVEQRAQVLSHELGHAIEPGMETLIVKARMGMVDENIWTLIRKDHSRFPVRLSV 122

Query: 403 IVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
               N  G   G + + +++T Q   E               +   G+A+  P G+    
Sbjct: 123 TALRNDLGHLTGFLGIGKDITAQQAAEASLVESEARFSAAFQNAPIGMALVSPSGQCLRV 182

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGT 517
           N A   L    + +L     +  +     R   E++   L A  I ++  E + L  QG 
Sbjct: 183 NHALAHLLGYPQTKL-MDLILTEMIHPKDRSIEETNRLRLVAREIGNYCLELRCLHQQGH 241

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK------------- 564
              +  +V   +   +     ++   ++T   +AE  L   N  L +             
Sbjct: 242 EVWVLMNVSLVNGQEVYPPYCIVQVQDITRRKQAEAQLQRLNANLEQLVEERTRQLKEAI 301

Query: 565 -----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                A++ K+ F+ ++S+E R+PL  I+GF+ LL   +   + S Q   +  I  S   
Sbjct: 302 ETTEIANQAKSRFIANMSHEFRTPLNGIMGFSQLLLQDRR--ITSDQQSNLNVILRSGEH 359

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+LVN+++ L+ ++AG++      + L+ L   V+  ++ + +  +I+ ++     +  
Sbjct: 360 LLSLVNEVITLSKIEAGMLAYESKDVNLHHLCEGVEDLLSLQANSKDIQFQIHIAPDVPQ 419

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPE 732
           +V  D ++L QI   +L NA+ F+ +GS V           R   +  F +++ G  IP 
Sbjct: 420 YVRTDAKKLRQILINLLGNALKFTKRGSVVCQVQWRPSAPERSAHELHFIIQDTGPGIPG 479

Query: 733 DMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +   +F  F  +  +R    G+GLGL+I + FI+L  G +SI S +   TT++  I
Sbjct: 480 HLLPQLFEPFAQDPLNRETFGGIGLGLTICQRFIHLMKGDISIESVEGQGTTVSFYI 536



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 82/283 (28%), Gaps = 44/283 (15%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF-----------QKAIGESRKL 243
            + + DS DF++   D  G I   N    K                     + + +  ++
Sbjct: 17  QQAILDSADFVIVSTDINGLIQTLNAGALKQFGYSPEEIIDRVTPIIFHDPEEVEQRAQV 76

Query: 244 FKEEIKKRMISS------SALEKNFCETVSTLEHGNNKSYKIV--------RVLNSFGEA 289
              E+   +          A      E + TL   ++  + +          + +  G  
Sbjct: 77  LSHELGHAIEPGMETLIVKARMGMVDENIWTLIRKDHSRFPVRLSVTALRNDLGHLTGFL 136

Query: 290 GIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           GI  D++ +      L            N  + +A+   +      N +   L       
Sbjct: 137 GIGKDITAQQAAEASLVESEARFSAAFQNAPIGMALVSPSGQCLRVNHALAHLLGYPQTK 196

Query: 346 LAT-------NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           L         +P +  + E  R      E  N+      +  +++      + W L N  
Sbjct: 197 LMDLILTEMIHPKDRSIEETNRLRLVAREIGNYCL---ELRCLHQQG---HEVWVLMNVS 250

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
            ++      P    I   +++T +   E +   L     + ++
Sbjct: 251 LVNGQEVYPP--YCIVQVQDITRRKQAEAQLQRLNANLEQLVE 291


>gi|152991089|ref|YP_001356811.1| two-component sensor histidine kinase/response regulator
           [Nitratiruptor sp. SB155-2]
 gi|151422950|dbj|BAF70454.1| two-component sensor histidine kinase/response regulator
           [Nitratiruptor sp. SB155-2]
          Length = 1044

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 11/246 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +   +   A  +A   K+ F+ ++S+E+R+PL  IIGFTDLLK ++   L  +Q ++V
Sbjct: 378 ALKKAQDAKTAAEEASHAKSMFLANMSHEIRTPLNGIIGFTDLLKNTE---LTPEQREFV 434

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  SS  LL ++N ILDL+ +++  +++        +      +  A +  E +I   
Sbjct: 435 NIIEKSSENLLEIINAILDLSKIESKKIEIENIVFNPIEEFENAIEVYAPRAAEKDINFA 494

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVK 724
           +  D  L      D  ++ ++   ++SNA+ F+ +G  V ++  +     +  +  F V+
Sbjct: 495 LFVDPHLNKPLKGDPTKIKEVLINLISNAIKFTDRGGNVTVEIRKVKEYNERAEIYFEVR 554

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IPED  K +F  F        R   G GLGL+I   FI L GG +++ S     T
Sbjct: 555 DTGIGIPEDKQKQIFEAFSQADSSVTRKFGGTGLGLTISSEFIKLMGGRLNLESEVGKGT 614

Query: 783 TINCRI 788
                +
Sbjct: 615 KFFFTL 620


>gi|239908403|ref|YP_002955145.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798270|dbj|BAH77259.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 855

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/540 (18%), Positives = 190/540 (35%), Gaps = 76/540 (14%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            + +    I +   +R +  +  +  EL  +D   L++      L + L +  +      
Sbjct: 158 FIQDAATGIFLDANDRAVSLYGYARDELRRLDPERLSSGFPPYTLADALINLGQ------ 211

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
               +  +F      +  +  W      +L  + T  P G  I +  +++ +   E    
Sbjct: 212 AAAGQPRLFDWLARDKAGRLFW---VEVSLRGMDTGRP-GRVIAVVRDISERKTTERALR 267

Query: 431 TLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCS 488
              K   +  + + E   +  PD  RI   +PA+  LW      L        +      
Sbjct: 268 ESEKKFRQLAEAIGEVFWLGSPDWKRIYYISPAYERLWGHTTKSLYDAPMSWLDAVHPDD 327

Query: 489 RYYNESDGWDLFAAIIT--SFDDERKSL-QGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
           R        DL    +    F + R     G++  ++  +           +      ++
Sbjct: 328 RDRVLRYIADLAGRPLRPGQFPEYRIVRPDGSMRWIAARIFPVIDDAGVVYRVAGIAEDI 387

Query: 546 TDSVRAERALTEKNEALRKADEIKN----------------------------------- 570
           TD V + + L   NE L      +                                    
Sbjct: 388 TDRVLSRQDLERVNERLEDMVRERTRTLNRMNQELIHEVTERREAEAAMAQAKEAAEAAS 447

Query: 571 ----SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
                F+ ++S+E+R+P+  I+G   +L  +    L++ Q+ Y+  I  S+  LL L+ND
Sbjct: 448 QAKSEFLANMSHEIRTPMNGILGMAQVLGQT---DLDAAQASYLRDIEDSAASLLKLIND 504

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQ 685
           ILD + ++A  ++L      L  LL+ ++ S+     E  + + V    +     + D  
Sbjct: 505 ILDFSKIEADRLELAQEPFSLRGLLSLIEASLGVLAREKGLGLSVEVAPETPDILIGDAD 564

Query: 686 RLLQIFSKILSNAMDFSSKGSTVIL----------------KAARDNGDFIFSVKNNGSS 729
           RL Q+   ++ NA+ F+++G  VI                 +      + +FSV + G  
Sbjct: 565 RLRQVLVNLVGNAIKFTTRGGIVISARPAEPDPDVTLPGEAETTEATREILFSVSDTGIG 624

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +    +F  F        RR  G GLGL+I      L GG +S+ S     +T    
Sbjct: 625 IRPEDAGRIFEAFTQADGSYTRRFGGTGLGLAISRRLARLMGGDISLDSEPGQGSTFTLS 684



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 24/228 (10%)

Query: 127 LSKATEKL--RKEGQS--FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
           L+ A   L     GQ   FD +A  +      +E          R   +  +  +++E  
Sbjct: 202 LADALINLGQAAAGQPRLFDWLARDKAGRLFWVE-VSLRGMDTGRPGRVIAVVRDISERK 260

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIVFQKAIGESR 241
              + L      F+ L +++  + W        I + + +Y++           A     
Sbjct: 261 TTERALRESEKKFRQLAEAIGEVFWLGSPDWKRIYYISPAYERLWGHTTKSLYDAPMSWL 320

Query: 242 KLFKEEIKKR-------MISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGE---- 288
                + + R       +         F E       G+ +    +I  V++  G     
Sbjct: 321 DAVHPDDRDRVLRYIADLAGRPLRPGQFPEYRIVRPDGSMRWIAARIFPVIDDAGVVYRV 380

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           AGIA D++  +     L    E L ++     + ++ R L   N+  +
Sbjct: 381 AGIAEDITDRVLSRQDLERVNERLEDM-----VRERTRTLNRMNQELI 423


>gi|239906733|ref|YP_002953474.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796599|dbj|BAH75588.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 572

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/543 (19%), Positives = 205/543 (37%), Gaps = 77/543 (14%)

Query: 308 TYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
              +L     AI + D     +     +   +   +   L   P    L        +  
Sbjct: 44  FRSLLDQTGDAIFLVDVATGRIADAAGAAGAMLRQERGDLRGLPFEHFLPPDAVLRLRGL 103

Query: 367 EQLNWKTWKENIFSVYKSSE------THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
              ++   +    S+ +  +        + T+ L  G+   V          + +  ++T
Sbjct: 104 FSGDFAAGRVE-TSLSRPGDEAGGSLPVEMTFRLAQGEAGRV---------AVIVARDVT 153

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   E       +     +++ +EG+      GR+  +NPA  ++        +P   +
Sbjct: 154 ERKKNEEALRRAEERYRGIVENAAEGIFQSTLSGRLMNANPALAAILGYA----NPDDLL 209

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDD-----------------------ERKSLQGT 517
           R++ +         +      + +  +D+                         +  +GT
Sbjct: 210 RHVKSVVDEVVAAPEDRHRIRSELDRYDEVKNLEVQLITKSGAHIWGLINARRIRGEEGT 269

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRK----------- 564
            E    SV + +I      QT++ + +  +   AER   LT  NE L             
Sbjct: 270 PERFDGSVQDVTIRKQAE-QTLIRYHDELEQRVAERTAELTRINERLVHEVTIRKRAEEA 328

Query: 565 ---ADEIKNSFVQHVSYELRSPLTNIIGFTDLLK------------TSKLGSLNSKQ-SQ 608
              A+  K+ F+  VS+E+R+PLT+++GF  L+K             +    L ++Q   
Sbjct: 329 AEAANRAKSDFLSMVSHEIRTPLTSVLGFAVLIKKRLARLLPASAVDTPKKRLQAEQIQD 388

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I A    L +L+ND+LDLA ++AG M      +   +++  V  + A  +   NI 
Sbjct: 389 NLDIIVAEGERLKHLINDVLDLAKLEAGKMAFKSEPVDPAEVVRHVMNASAGLLQNTNIV 448

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +    +G+L     DR RL+Q+   ++SNA+ F+ +G  V  +A       +  V + G 
Sbjct: 449 LDTRIEGRLPLVRGDRDRLIQVLVNLVSNAIKFTDQG-YVACRARAQGNTIVIEVSDTGI 507

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     VF +F         + +G GLGL+I +  +  HGG +   S     +T   
Sbjct: 508 GIPESEQGKVFEKFNQIGGTLTNKPKGTGLGLTICKHIVESHGGRIFCVSRPGAGSTFTF 567

Query: 787 RIP 789
            +P
Sbjct: 568 TLP 570



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 67/211 (31%), Gaps = 15/211 (7%)

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
           E  +   A+   R LF  +     + +S          S        ++++ +       
Sbjct: 89  EHFLPPDAVLRLRGLFSGDFAAGRVETSLSRPGDEAGGSLPVE---MTFRLAQGEAGRVA 145

Query: 289 AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--D 342
             +A DV++    E  +         I+ N    I     +  L   N +   +      
Sbjct: 146 VIVARDVTERKKNEEALRRAEERYRGIVENAAEGIFQSTLSGRLMNANPALAAILGYANP 205

Query: 343 LAFLA-TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
              L       DE++      +++  +L+     +N   V   +++    W L N + + 
Sbjct: 206 DDLLRHVKSVVDEVVAAPEDRHRIRSELDRYDEVKN-LEVQLITKSGAHIWGLINARRIR 264

Query: 402 V-IVTSNPRGGTIWMFENLTVQVDLETKYNT 431
               T     G++   +++T++   E     
Sbjct: 265 GEEGTPERFDGSV---QDVTIRKQAEQTLIR 292



 Score = 37.6 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 68/224 (30%), Gaps = 20/224 (8%)

Query: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVA-----ETQNDCAIKIEGRVSG 161
           + D   L FE++L     ++L          G+  +        E      +++  R++ 
Sbjct: 80  RGDLRGLPFEHFLPPDAVLRLRGLFSGDFAAGRV-ETSLSRPGDEAGGSLPVEMTFRLAQ 138

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
             A  R+  +  +  ++ E     + L      ++ + ++    ++    +G ++ AN +
Sbjct: 139 GEAG-RVAVI--VARDVTERKKNEEALRRAEERYRGIVENAAEGIFQSTLSGRLMNANPA 195

Query: 222 YKKNTETEGIV-----FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
                            +  + E     ++  + R       E    E     + G +  
Sbjct: 196 LAAILGYANPDDLLRHVKSVVDEVVAAPEDRHRIRSELDRYDEVKNLEVQLITKSGAHIW 255

Query: 277 --YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHN 314
                 R+    G      G   DV+        L   ++ L  
Sbjct: 256 GLINARRIRGEEGTPERFDGSVQDVTIRKQAEQTLIRYHDELEQ 299


>gi|320160588|ref|YP_004173812.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994441|dbj|BAJ63212.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1660

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 9/252 (3%)

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            ++ RA     +  E +R+ D +K+ F+ ++S+ELR+PL +IIGF+ ++     G +N  Q
Sbjct: 1143 ENARAYELAQKAVEEMREVDRVKSQFLANMSHELRTPLNSIIGFSRVILRGIDGPINDTQ 1202

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Q +  I  S   LLNL+NDILDL+ ++AG M+L++S + + DL+N    +    + +  
Sbjct: 1203 KQDLTAIYNSGQHLLNLINDILDLSKIEAGKMELSFSDVNMTDLINSAMSTAVGLVKDKP 1262

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIF 721
            I++    +  L    AD  R+ Q+    LSNA  F+ +GS + ++A R        + + 
Sbjct: 1263 IKLITEIEDNLPIVRADATRVRQVLINFLSNAAKFTDEGS-ITVRARRVRSPEGKPELMV 1321

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS-ISSSD 778
            +V + G  I E+    +F  F         +  G GLGLSI  S I +HGG +  + S+ 
Sbjct: 1322 TVTDTGPGIAEEDRSKLFLPFSQVDDSPTRKTGGTGLGLSICRSLIEMHGGRIGLLESTV 1381

Query: 779  EGVTTINCRIPS 790
               +T    +P 
Sbjct: 1382 GVGSTFFFTLPL 1393


>gi|284051252|ref|ZP_06381462.1| histidine kinase [Arthrospira platensis str. Paraca]
          Length = 1064

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 12/287 (4%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   +    ++++ S+    +   ++   ++T+  R  + LT KN  L + + +K+ F+ 
Sbjct: 298 QRVWQFTRQTLVQPSLTECFDKWWLIIAQDITEQYRVAQELTAKNADLIQLNRLKDEFLA 357

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+EL++PLT ++G + LLK   LG L+ +Q++Y + I  S   L+ +VNDILDL  ++
Sbjct: 358 CISHELKTPLTAVLGLSSLLKDKALGELSDRQAKYAKLIHQSGRHLMMVVNDILDLTRIE 417

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----------RIKVISDGKLGSFVADR 684
            G ++L    + +  + +   +++     + +I          +  +  +  L +  AD 
Sbjct: 418 TGQLELTPEGVNIQTVCDRALEAVLHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADE 477

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   ++SNA  F+  G ++ L+  R     +F+V + G  IPE     +F +F  
Sbjct: 478 LRLRQMLINLISNAFKFTPDGGSMGLRVNRWEDWIVFTVWDTGIGIPEQKQHLIFEKFQQ 537

Query: 745 NAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  Q  G GLGL + +    LHGG +S  S     T     +P
Sbjct: 538 LESPLTRQFEGTGLGLVLCQRLARLHGGDISFISHKGKGTEFTLLLP 584


>gi|255535913|ref|YP_003096284.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
 gi|255342109|gb|ACU08222.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
          Length = 1298

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 130/653 (19%), Positives = 262/653 (40%), Gaps = 57/653 (8%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
             +     + +KL      F+  F++   L+   D  G+IL  N   ++  +      QK
Sbjct: 269 RNVTRLIAEKQKLERSERRFRSFFENAIGLMSMHDMEGNILAVNEKGRETLKYSAEETQK 328

Query: 236 AIGESRKLFKEE--IKKRMISSSALEKNFCETVSTLEHGNNKSY---KIVRVLNSF--GE 288
                         ++  +   +  +++    +   + G    +    +V +  +     
Sbjct: 329 LNLRDLVPKDNWQLLQGYLERIAEYKEDSGYMMLCAKDGEQLVWMYHNLVEIDENGRPYV 388

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ----FHNRSFVELWEIDLA 344
              A++V++++++   L +T +IL   + A  +      LQ    F +++  E+ ++   
Sbjct: 389 VSTALNVTEKMSLEKDLIYTKKILEQTSAAARVGGWEVNLQNGKTFWSQTTKEIHKVADD 448

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHV 402
           F    P     L+F    ++       +          K+ E + D + L  P+G  + V
Sbjct: 449 F---EPELASALDFYTEESR-------ERVSALFDRAVKTGERYDDEFELSQPDGSRIWV 498

Query: 403 IVTSNPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
                P            + +N+ +      +      +    +  +   VA+F      
Sbjct: 499 RAIGIPEFEHGVCKKVFGIIQNIDIAKRTYLELEKKEAMLQSFVKDVPVAVAMFD----- 553

Query: 457 KLSNPAFRSLWKTEENRLSPGTHI---RNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
              N  + S+ K   +  S   +    RNI         E     + A    S+  E   
Sbjct: 554 --HNLNYLSVSKWWTDEFSMDVNAMKGRNIFEVSPNVPEERVKMYMGALQGKSYKSENLV 611

Query: 514 LQGTLEL-LSDSVLEYSIIPLPN---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           L    +  +    +E S   L N      +++  N+T+ VR    L    +   +A + K
Sbjct: 612 LPVPGKTQVQHYNMEVSPWFLANKVIGGVIVSVQNITERVRTTVELKNAQQLAVRASKAK 671

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+PL  +IGF+DLL  +    LN  Q+QY+ YI+ S   LL ++NDILD
Sbjct: 672 SEFLANMSHEIRTPLNGVIGFSDLLLKT---PLNEMQTQYLNYINESGESLLTIINDILD 728

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLL 688
            + +++G M+L      + D++ +V   I  +  + ++ + +  +  L   +  D  R+ 
Sbjct: 729 FSKIESGKMELMIDRTPVYDMVGQVINVILFQSQKKDLELLLNIEPGLPEILFLDESRVK 788

Query: 689 QIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           QI   +L NA+ F+ +G  + LK  +     +     F+V++ G  IP+D  K +F+ F 
Sbjct: 789 QILINLLGNAVKFTLRGE-IELKVQKLRMDAERIALRFAVRDTGIGIPKDKQKRIFDAFT 847

Query: 744 SNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI--PSKE 792
                   +  G GLGL+I  + +   G  +S+ S+    +     I  P +E
Sbjct: 848 QEDSSVSKKYGGTGLGLTISNNILKYMGTSLSLKSTPGEGSEFYFDIEVPYEE 900


>gi|62290486|ref|YP_222279.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82700409|ref|YP_414983.1| PAS/histidine kinase/ATPase domain-containing protein [Brucella
            melitensis biovar Abortus 2308]
 gi|189024711|ref|YP_001935479.1| sensory box histidine kinase [Brucella abortus S19]
 gi|237815994|ref|ZP_04594991.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|254697930|ref|ZP_05159758.1| sensory box histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730820|ref|ZP_05189398.1| sensory box histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260547015|ref|ZP_05822754.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|260758539|ref|ZP_05870887.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 4 str. 292]
 gi|260762362|ref|ZP_05874705.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 2 str. 86/8/59]
 gi|75496411|sp|Q57BR6|PDHS_BRUAB RecName: Full=Cell-division control histidine kinase pdhS; AltName:
            Full=PleC-divJ homolog sensor
 gi|123768481|sp|Q2YRB4|PDHS_BRUA2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|223635608|sp|B2S758|PDHS_BRUA1 RecName: Full=Cell-division control histidine kinase pdhS
 gi|62196618|gb|AAX74918.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616510|emb|CAJ11577.1| PAS domain:ATP-binding region, ATPase-like:Histidine kinase A,
            N-terminal:Bacterial sensor protein, C-terminal:Histidine
            kinase [Brucella melitensis biovar Abortus 2308]
 gi|189020283|gb|ACD73005.1| sensory box histidine kinase [Brucella abortus S19]
 gi|237789292|gb|EEP63503.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|260096065|gb|EEW79942.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|260668857|gb|EEX55797.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 4 str. 292]
 gi|260672794|gb|EEX59615.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 2 str. 86/8/59]
          Length = 1035

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMLLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|270289945|ref|ZP_06196171.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304385804|ref|ZP_07368148.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
 gi|270281482|gb|EFA27314.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304328308|gb|EFL95530.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
          Length = 615

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 157/390 (40%), Gaps = 30/390 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       +L+V+V+   +     + +    + ++++GV      GRI + N        
Sbjct: 239 GQLAAAVNDLSVRVEESQELTESERRRLDSVLGYMTDGVLATDRRGRITIVNEMATDFLN 298

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             EN    G  I +I              +    ++   +DE+           D +L  
Sbjct: 299 L-ENDQIVGKSILDILDLRGSVTLRDLLENQDPEVLDLSNDEQ-----------DLILHA 346

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S   +      ++ +        E+          K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 347 SFALIQRESGFISGLVCVLHDVTEQQ---------KIDQDRKRFVSNVSHELRTPLTSMK 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L        N     +++     +  ++ ++ND+L+L+ +D G  +L+   + LN
Sbjct: 398 SYIEALVDGAWKDPNV-APNFLKVTQEETDRMMRMINDLLNLSRMDLGTARLDKEYVNLN 456

Query: 649 DLLNEVKQSIATKMH-----ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           +L N +       +      E N  IK     +      D  ++ Q+   I++NA+ +S 
Sbjct: 457 ELFNHILDRFDMILKNGEKSEKNYTIKRDFTRRDIWVEVDTDKIQQVLDNIMNNAIKYSP 516

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
            G  +  +    +   I S+ + G  IP++    VF+RF          + G GLGL+I 
Sbjct: 517 DGGVITCRLVETHNHVIMSITDQGLGIPKEAISHVFDRFYRVDKARSRAQGGTGLGLAIS 576

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  + +HGG + + S +   +T    +P +
Sbjct: 577 KEVVQMHGGRIWVESREGEGSTFYISLPYE 606


>gi|212639747|ref|YP_002316267.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
 gi|212561227|gb|ACJ34282.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
          Length = 962

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 126/697 (18%), Positives = 266/697 (38%), Gaps = 94/697 (13%)

Query: 126 KLSKATEKLRKEGQS----FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
           +L    ++LR    +    F L   T     I I        A + +  +    +ELA+ 
Sbjct: 174 QLDAEFQQLRDHQTTAQTVFILFIATILAILITI--------ARIMMRKIGRPLNELAKV 225

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             K       +   +   +         D+ G +  AN +++K   +     +  +  + 
Sbjct: 226 AEKIANDEQVVYDVREATN-------REDEIGKL--AN-AFQKMLTSIQEKEESLMAHNE 275

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
           +L  ++ +  +  +   +         LE    +  ++ R  +       ++D       
Sbjct: 276 ELLAQQDELEIQQAELEQ--------ALEAMQAREKELKRYNDFIQGLSNSLD------- 320

Query: 302 NDQLTHTYEILHNLTVAIA-IFDQNR-YLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
                   E+L+N+   IA + + +R  +   N       +   +F  +    ++ L ++
Sbjct: 321 ------RQEVLNNIVHNIARVMEADRGMIVLMNAE-----KTHASFGLSASGVEQFLTYI 369

Query: 360 RSA--NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI---- 413
            +    +L EQ      K  + +  K    H++T  + +   L V+   N     +    
Sbjct: 370 YNGLHQRLFEQKKPFMLKRELTASEKGY--HEETMFVHD-VFLPVLSNENDVQAILVFSR 426

Query: 414 ----WMFENLTVQVDLETKY-------------NTLVKVQGETIDHLSEGVAVFGPDGRI 456
               +  E++   V L  +                  +     ++ + EG+      G  
Sbjct: 427 FGGPFSDEDMQEYVGLTKQISISLQKIALYEQSEQARETVQHILNTVQEGIHFVDSKGHS 486

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD-GWDLFAAIITSFDDERKSLQ 515
            + N    +L + E      G      A       +      D   AII + D++ +   
Sbjct: 487 VMVNKQMVALLQKETIAELEGASYEQWARGLVEQSDAGKKLCDYLRAIIFNGDEDVEPFV 546

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             L      +  Y+     N +   T     D  +             + D++K+ FV  
Sbjct: 547 YHLPQKRKVIQVYAKPLYRNGERQGTVFVHRDITKQ-----------FEVDQMKSEFVST 595

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PL++++GFT+L+ T +L     +Q +Y+  I   +  L  L+ND LD+  +++
Sbjct: 596 VSHELRTPLSSVLGFTELMLTKELKP--ERQKKYLTTIYQEAKRLTALINDFLDVQRMES 653

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G    +     +  ++  V ++   K++    +  V  +    + + DR +L Q+F+ ++
Sbjct: 654 GKQTYDKKYEDIVSIIENVIET--QKVNTKIHQFHVQKETNNTTVLGDRDKLAQVFTNLI 711

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
           SNA+ +S +G  + ++           V++ G  IPE+   ++F +F    +  +RR  G
Sbjct: 712 SNAIKYSPEGGNITVRIYERGTRLCVDVQDEGLGIPEEAIPNLFTKFYRVDNSDRRRIGG 771

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGL+IV+  +  H G VS++S  +  +T    +P 
Sbjct: 772 TGLGLAIVKEIVKAHEGEVSVTSELKKGSTFTVSLPL 808


>gi|81300625|ref|YP_400833.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
 gi|81169506|gb|ABB57846.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
          Length = 977

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 144/320 (45%), Gaps = 9/320 (2%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+       +   +      L   I TS  DE   L      ++ ++ E  ++ L 
Sbjct: 389 GWAAHLGMRIEQLAHAADAMASGQLQQQIPTSGRDELTVLAQAFNRMAVTLREL-LVSLE 447

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +     T      + R E+A     E    A++ K++F+ ++S+ELR+PL  IIG+++++
Sbjct: 448 HRVQERTAALRETNDRLEQA----REQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMM 503

Query: 595 KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                  +   +       I+ +   LL L+N ILDL+ ++AG M+L   +  L +L+N 
Sbjct: 504 MEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELING 563

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           VK  I   + +N  ++ V     +G   AD  +L Q    +LSNA  F+ +G T+ L+ A
Sbjct: 564 VKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVA 622

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                 +F V ++G  +  +    +F  F        R   G GLGLSI   FI + GG 
Sbjct: 623 AQGDQVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGK 682

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S     +T    +P +
Sbjct: 683 ITVESVLGEGSTFTITLPRQ 702


>gi|294495726|ref|YP_003542219.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666725|gb|ADE36574.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 637

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 137/280 (48%), Gaps = 7/280 (2%)

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           +L G L+  +D+ +E     +P    +     +    +    L + NE L+  D +K+ F
Sbjct: 354 ALHGKLDSRADTEVEVDFKEIP----VGLNEILDALKKNSDELRKANEELKSLDRMKDEF 409

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + +VS+EL++PLT I G+T+LL   K+G LN +Q +    +  ++  L  LV+ +L L+ 
Sbjct: 410 LSNVSHELKTPLTLIKGYTELLCEGKMGQLNKEQIEVQNKVVRNAERLKRLVDSLLYLSK 469

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           + A  ++  + T+ + +++  + + +        I +++  +  L     D+ +L  + +
Sbjct: 470 IQASNVEYVFETVHVKEIIEIILEDMRMIADLKGIELEMNLEEDLPKINGDKDKLTDMIT 529

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            I+ NA+ F+  G  V + + +  GD    VK+ G  IPEDM  ++F RF        R 
Sbjct: 530 NIVDNAIKFTPSGGKVTVTSFKKEGDIHIVVKDTGIGIPEDMIDNLFQRFYQLDASRTRK 589

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
             G GLGL I  +    H G +  +S  +   T ++  IP
Sbjct: 590 YGGTGLGLYISMTIAQAHHGDIWATSEGEGKGTEMHIEIP 629


>gi|163843854|ref|YP_001628258.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|223635611|sp|B0CI82|PDHS_BRUSI RecName: Full=Cell-division control histidine kinase pdhS
 gi|163674577|gb|ABY38688.1| PAS domain S-box [Brucella suis ATCC 23445]
          Length = 1035

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 125/728 (17%), Positives = 260/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  +TH +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDTHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|149375878|ref|ZP_01893645.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
 gi|149359758|gb|EDM48215.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
          Length = 1054

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 159/385 (41%), Gaps = 25/385 (6%)

Query: 422 QVDLETKYNTLV---KVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++++T+   LV    +    ++  +E  +     DG I L N    +L     + +   
Sbjct: 417 ELEVKTRTRELVNTSAMLSNVLEASTEMAIIATDTDGTITLFNKGAENLLGYSSSSMVGT 476

Query: 478 THI------RNIAATCSRYYNES----DGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                      I       Y E+     G+D+          E +      +L     + 
Sbjct: 477 HSPALFHLSSEIEERSQELYEETGETVSGFDVLVQRPLHEGSETREWSYVNKLGKQIPVM 536

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            ++ P+ +    +T          ER          + +++K  F+  VS+ELR+PLT++
Sbjct: 537 LTVTPIRDDVDRITGFLGIAQDITERK---------RLEQMKTEFISTVSHELRTPLTSV 587

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G   L+   +LG +  K  + +     +S  L +L+ND+LD   + AG +  +     +
Sbjct: 588 SGAIGLVLGGRLGDIPEKAQELLNTAQRNSERLAHLINDLLDTDKIAAGKIHFDMQVTPI 647

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             +L +  +   T   E N+++ +       S   D QRL Q+ + +LSNA+ FS  G T
Sbjct: 648 IPILEQSLEENRTYCAEQNLKLVLTRKLTQTSVKVDVQRLKQVLANLLSNAIKFSPDGGT 707

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
           V ++A   + D   SV + G  IPED    VF +F         Q+ G GLGL+I    +
Sbjct: 708 VSIEATSTDTDITVSVVDQGPGIPEDFQHKVFQKFAQADSSDTRQKGGTGLGLAITRELV 767

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG +   +++   T     +P+
Sbjct: 768 KRMGGTIGFETTEGKGTRFFFTLPA 792


>gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1877

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 124/718 (17%), Positives = 260/718 (36%), Gaps = 103/718 (14%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             ++     +  E      +        + + ++L   V   +   ++   N S +     
Sbjct: 1144 RNITDRKRDEQERERNLVETDRQRRTLQGILEALPVGVVVYNADFEMQLQNQSAQLIVGQ 1203

Query: 229  E----GIVFQKAIGESRKLFKEEIKKRMIS------SSALEKNFCETVSTLEHGNNKSYK 278
                        +GE+ +LF    +            +       +    + H + + + 
Sbjct: 1204 PIGDVNPDAIDTVGETYQLFIPGTETAFDPNDIPVFRAIRHGEHAQAEFDIAHPDGRRFT 1263

Query: 279  IVR----VLNSFGEA--GIAI--DVSKEITVNDQLTHTYE-----------ILHNLTVAI 319
            ++     V NS G+   GIA+  D++       +     +           IL N+ + +
Sbjct: 1264 VLASGAPVFNSEGQVISGIALLQDITDRKLNEQERERLLQATIEQERLLKAILDNMPIGV 1323

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE--FLRSANKLPEQLNWKTWKEN 377
             + +     Q  NRS +E+  +     A      +L    FL        +         
Sbjct: 1324 YVVNSKGVSQMINRSTIEILGVSGQMGAAVLDQSDLPRPKFLYEGT----EKELDVHDTG 1379

Query: 378  IFSVYKSSETHKDTW--HLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETK 428
            +F    + +  ++       +G+ + V   + P         G + + +++T Q + + +
Sbjct: 1380 LFKALSTKKPSRELVDVMRFDGKRVSVDSVAVPMFDDQQQLTGVLSLIQDVTEQRNAQRE 1439

Query: 429  ---------YNTLVKVQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
                     Y  L       +   + G+         V            A   L+  E 
Sbjct: 1440 REQLLSQVEYRALELETVAQVSTSAAGLLNVEELLQTVVDLTKHRFGLYHAHIYLYNPES 1499

Query: 472  NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
              L        I  T  +    +   D   +++      R+S+       + S L + ++
Sbjct: 1500 QLLELAFGAGEIGRTMVKE-GRTIPLDREQSLVAQAGRARRSIIENDVRSNPSFLPHPLL 1558

Query: 532  P------------------LPNAQTMLTFVNVTDSVRAERAL-----------------T 556
            P                  + + Q+  + +   D  + +  L                 T
Sbjct: 1559 PETRAEMATPLIAGSMLLGVLDVQSDQSNIFTDDDRKIQTTLASQIAIALQNARLFAEQT 1618

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               + L++ D++K++F+ ++S+ELR+PL +I+GFT+++     G +N      +  I  +
Sbjct: 1619 ATMQRLQELDQLKSAFLANMSHELRTPLNSILGFTEVILEGINGPINDLIHNDLSIIHRN 1678

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LLNL+NDILD+A +++G + L   T  + ++L+EV  ++     + ++ + V  +  
Sbjct: 1679 GRHLLNLINDILDMAKIESGKLTLFRETFDVVEVLHEVASTVGPLATQKHLELLVDIEPN 1738

Query: 677  L-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L     ADR R+ Q+   I+ NA+ F+ +GS V +         +  +++ G  IP D  
Sbjct: 1739 LKLPVYADRFRIRQVLLNIVGNALKFTEQGS-VTIGIDTTPTTRMIKIQDTGIGIPLDNQ 1797

Query: 736  KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS--DEGVTTINCRIP 789
             ++F  F    +   R   G GLGL I    + +HGG +S+ SS      +     +P
Sbjct: 1798 DTIFMEFHQVDNSTTRKAGGTGLGLPISRHLVEMHGGKLSMVSSGNPGEGSLFTIELP 1855



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 66/458 (14%), Positives = 156/458 (34%), Gaps = 56/458 (12%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK---- 223
            +++  G+  +++E     + L   +   K + DS  +++      G I   N S +    
Sbjct: 869  LINFIGVQQDVSERVEAQRALQESLGFQKTMVDSASYMIISTTVDGQITSFNRSAEVALG 928

Query: 224  -KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG---------- 272
                +  G     A  +  ++ +     R     A+E  F   V   + G          
Sbjct: 929  YSAHDMVGKSPAGAFHDQAEVMQHTEALRAKLGYAIE-PFEAIVYEAKQGQPSVKEWTYI 987

Query: 273  --NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA---- 318
              + + + +   + +         G  GIA D+S +      L  +     +L  +    
Sbjct: 988  AQDGRRFPVQLSITALRDQQGNVTGYLGIANDISVQKQQEQALRDSEVRYRSLAESSRDV 1047

Query: 319  IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
            + IFD+   LQ+ N     ++    A L        L      + +   ++ + T +   
Sbjct: 1048 VFIFDREHRLQYINEFAAGIFNRTPAELIGLLDEQMLTPATVESRRADAEIIFSTAQNLN 1107

Query: 379  FSVYKSSETHKDTWHLPNGQTLHVIV--TSNPRGGTIWMFENLTVQVDLETKY------- 429
                     +++TW   + Q L ++   TS+P    + +  N+T +   E +        
Sbjct: 1108 RESMFMV-NNEETWF--DFQLLPIMDDQTSSPE-LIMSVGRNITDRKRDEQERERNLVET 1163

Query: 430  NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +   +     ++ L  GV V+  D  ++L N + + +       ++P   I  +  T   
Sbjct: 1164 DRQRRTLQGILEALPVGVVVYNADFEMQLQNQSAQLIVGQPIGDVNPDA-IDTVGETYQL 1222

Query: 490  YYN------ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF- 542
            +        + +   +F AI    +  +              +  S  P+ N++  +   
Sbjct: 1223 FIPGTETAFDPNDIPVFRAIRHG-EHAQAEFDIAHPDGRRFTVLASGAPVFNSEGQVISG 1281

Query: 543  ----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                 ++TD    E+      +A  + + +  + + ++
Sbjct: 1282 IALLQDITDRKLNEQERERLLQATIEQERLLKAILDNM 1319



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/438 (11%), Positives = 141/438 (32%), Gaps = 50/438 (11%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ---AGDILWANISYKKNTETE 229
             +  E A++  +  +    + + +    + +  +   D       +++ N ++++ T   
Sbjct: 745  AVALENAQSFEEITRTQELLRIRERAITASNDGIVIVDPHQFDMPVVYVNPAFERIT--- 801

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--------SYKIVR 281
            G   ++ IG++ +  + +   +            +  + +   N +           I  
Sbjct: 802  GYTPEEIIGKNCRFLQGDDTDQQGLRELRHAVREKRATRVLLRNYRKDGSLFWNELDINP 861

Query: 282  VLNSFGE----AGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNR 333
            V +  GE     G+  DVS+ +     L  +      ++ + +  I     +  +   NR
Sbjct: 862  VFDENGELINFIGVQQDVSERVEAQRALQESLGFQKTMVDSASYMIISTTVDGQITSFNR 921

Query: 334  SFVELWEIDLAFLATNPSNDELLEFLR-----SANKLPEQLNWKTWKENIFSVYKSSETH 388
            S           +          +         A +       + ++  ++   +   + 
Sbjct: 922  SAEVALGYSAHDMVGKSPAGAFHDQAEVMQHTEALRAKLGYAIEPFEAIVYEAKQGQPSV 981

Query: 389  KDTWHLP-NGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            K+  ++  +G+   V ++            G + +  +++VQ   E              
Sbjct: 982  KEWTYIAQDGRRFPVQLSITALRDQQGNVTGYLGIANDISVQKQQEQALRDSEVRYRSLA 1041

Query: 441  DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            +   + V +F  + R++  N     ++      L  G     +    +     +D     
Sbjct: 1042 ESSRDVVFIFDREHRLQYINEFAAGIFNRTPAEL-IGLLDEQMLTPATVESRRAD----- 1095

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT------MLTFVNVTDSVRAERA 554
            A II S           +    ++  ++ ++P+ + QT      M    N+TD  R E+ 
Sbjct: 1096 AEIIFSTAQNLNRESMFMVNNEETWFDFQLLPIMDDQTSSPELIMSVGRNITDRKRDEQE 1155

Query: 555  LTEKNEALRKADEIKNSF 572
               +   L + D  + + 
Sbjct: 1156 ---RERNLVETDRQRRTL 1170



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/452 (12%), Positives = 146/452 (32%), Gaps = 55/452 (12%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            GI ++++    + + L +    ++ L +S   +V+  D+   + + N             
Sbjct: 1015 GIANDISVQKQQEQALRDSEVRYRSLAESSRDVVFIFDREHRLQYINEF---AAGIFNRT 1071

Query: 233  FQKAIGESRKLFKEEIKKRMISSSA-----LEKNFCETVSTLEHGNNKSYKI-------V 280
              + IG   +            + A       +N       + +     +          
Sbjct: 1072 PAELIGLLDEQMLTPATVESRRADAEIIFSTAQNLNRESMFMVNNEETWFDFQLLPIMDD 1131

Query: 281  RVLNSFGEAGIAIDVSKE-----------ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
            +  +      +  +++             +  + Q      IL  L V + +++ +  +Q
Sbjct: 1132 QTSSPELIMSVGRNITDRKRDEQERERNLVETDRQRRTLQGILEALPVGVVVYNADFEMQ 1191

Query: 330  FHNRSFVELWEIDLAFLATNPS-NDELLE----FLRSANKLPEQLNWKTWKENIFSVYKS 384
              N+S   +    +     NP   D + E    F+       +  +   ++      +  
Sbjct: 1192 LQNQSAQLIVGQPIG--DVNPDAIDTVGETYQLFIPGTETAFDPNDIPVFRAIRHGEHAQ 1249

Query: 385  SETHKDTWHLPNGQTLHVIVTSNP----RGGTI---WMFENLTVQVDLETKYNTLV---- 433
            +E   D  H P+G+   V+ +  P     G  I    + +++T +   E +   L+    
Sbjct: 1250 AEF--DIAH-PDGRRFTVLASGAPVFNSEGQVISGIALLQDITDRKLNEQERERLLQATI 1306

Query: 434  ---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
               ++    +D++  GV V    G  ++ N +   +        +      ++      Y
Sbjct: 1307 EQERLLKAILDNMPIGVYVVNSKGVSQMINRSTIEILGVSGQMGAAVLDQSDLPRPKFLY 1366

Query: 491  YNESDGWDLF-AAIITSFDDERKSLQGTLELLSD----SVLEYSIIPLPNAQTMLTFVNV 545
                   D+    +  +   ++ S +    +  D    SV   ++    + Q +   +++
Sbjct: 1367 EGTEKELDVHDTGLFKALSTKKPSRELVDVMRFDGKRVSVDSVAVPMFDDQQQLTGVLSL 1426

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               V  +R    + E L    E +   ++ V+
Sbjct: 1427 IQDVTEQRNAQREREQLLSQVEYRALELETVA 1458


>gi|83855337|ref|ZP_00948867.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83843180|gb|EAP82347.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 713

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 176/428 (41%), Gaps = 20/428 (4%)

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           +  + + Y+  + H     +   +T   +         +     ++       +     +
Sbjct: 25  QAELCAAYRKLDDHAQNVSVEISETRAEVENIRGENKRV-----MSDLCAAREQIELTQR 79

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
               +++ + +G A F  D  + ++N ++ +++   +  + PG     I    +     +
Sbjct: 80  RLWHSVETIHDGFAFFNKDNEMIMANRSYLAVFDDIDA-IRPGVSYSTILRVLTDEGIVN 138

Query: 495 DG---WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            G    + + A +     ++      ++L + + ++           +    ++T++V  
Sbjct: 139 IGRRTPEEWRAKMLLRSQQKAPAPIIIKLWNGAYIKIVDQRGKGGDIVSLARDITETVEY 198

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L +       A+  K+ F+  +S+E+R+P+  I+G T++L  +   +L   Q  YV+
Sbjct: 199 QRKLVDARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDT---ALTQDQRLYVD 255

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  LL ++ND+LD + ++A  + ++ +   L  +  EV   +     +  + + +
Sbjct: 256 TIKTSAEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQPLAVQKGLDLAL 315

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKN 725
             D  L    V D  R+ Q+ + ++ NA+ F+  G  +I      +          S+++
Sbjct: 316 DYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFTQNGHILIRATGLPDAGAGNVLIKISIED 375

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  DM + +   F   +        G GLGL+I +  + L GG + ++S     + 
Sbjct: 376 TGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQLMGGEIWVTSEHGVGSC 435

Query: 784 INCRIPSK 791
               +P K
Sbjct: 436 FGFELPLK 443



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 74/211 (35%), Gaps = 15/211 (7%)

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
               + +  ++      +   E+ +  + ++     +  + VS          + +R  N
Sbjct: 1   MKPADQLAHEQRRRAEVEALLEQTQAELCAAYRKLDDHAQNVSVEISETRAEVENIRGEN 60

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
               + +     +      +L H+ E +H      A F+++  +   NRS++ +++ D+ 
Sbjct: 61  KRVMSDLCAAREQIELTQRRLWHSVETIH---DGFAFFNKDNEMIMANRSYLAVFD-DID 116

Query: 345 FLATNPSNDELLEFLRSA------NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            +    S   +L  L          + PE+     W+  +    +          L NG 
Sbjct: 117 AIRPGVSYSTILRVLTDEGIVNIGRRTPEE-----WRAKMLLRSQQKAPAPIIIKLWNGA 171

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
            + ++      G  + +  ++T  V+ + K 
Sbjct: 172 YIKIVDQRGKGGDIVSLARDITETVEYQRKL 202


>gi|154250164|ref|YP_001410989.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154154100|gb|ABS61332.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 422

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 165/388 (42%), Gaps = 38/388 (9%)

Query: 413 IWMFENLTVQVD-LETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           ++++E L  +++ LE +     K +      ++++++ + +   DG I  +N A      
Sbjct: 49  LYIYERLRKKIEELEKRIFESEKERRNIFTILNNITDPIIIVRGDGVITFANIA------ 102

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSD-SVL 526
                   G  I        + Y+  + + L      + +  E +S    ++   +    
Sbjct: 103 --------GRDITRPGIEGRKVYDVVENYFLLEMFEKALETGEIQSGDVVMQTNGETRYY 154

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +  ++P+   Q    ++ V      E+ L          D+++  F+ +VS+ELR+PLT+
Sbjct: 155 DAKVVPIKFDQESERYIIVLHDTTKEKQL----------DKLRREFISNVSHELRTPLTS 204

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G+ + L    L +      +++  I + S  +  L+ND+LDL  +++G  K N+S + 
Sbjct: 205 IHGYAEALLDDDLSN-KELVRKFLGVIESESARMTRLINDLLDLEKLESGDAKFNFSDVN 263

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS---S 703
           +  ++  V   +     +  + +    + K  +   D  RL+Q+   ++ NA+ ++    
Sbjct: 264 MCKVIERVVTILEPLAEDYGVELYTKCECK-STVYGDFDRLVQLVLNLVDNAVKYTSIKE 322

Query: 704 KGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
            G   V +K        +F V++ G  IPED  K +F RF         +  G GLGLSI
Sbjct: 323 TGEKKVFVKCYGKEDKLVFEVQDTGPGIPEDAQKRLFERFYRVDKARSRKVGGTGLGLSI 382

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
           V+   + H   +S  S     TT     
Sbjct: 383 VKMIADKHNATISFESKVGEGTTFRVYF 410


>gi|237726071|ref|ZP_04556552.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229435879|gb|EEO45956.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 807

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/510 (20%), Positives = 206/510 (40%), Gaps = 30/510 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     +  +   I  NL     ++D++ ++        +L E ++         D +  
Sbjct: 305 ESEARLEKAYLQNIYKNLPAGFELYDKDGFMT-------DLNEKEMEIFGLRHKEDVIGL 357

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQ-TLHVIVTSNP------- 408
            L     LP+ L  K        + +       D ++  +   T+ +I    P       
Sbjct: 358 NLFDNPLLPQGLKDKLKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLYDALGN 417

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRS 465
               + +  + T   +  +K     +      ++   G A F     DG     N  +R+
Sbjct: 418 LINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDG--YAVNSWYRN 475

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSD 523
           + + E   L+    + +      R         +     +    + + L   GT      
Sbjct: 476 IGEKEGTPLNEIIKVHSHFHPDDRRMMLRFFDQVLIREASHLRRDVRILREDGTYTWTRV 535

Query: 524 SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +V+     P       +    ++T+    ER L    +   + D +K++F+ ++S+E+R+
Sbjct: 536 NVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRT 595

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL  ++       + QY+  +  ++ +LL L++DILDL+ +++G  +   
Sbjct: 596 PLNAIVGFSSLLTETEDMK---DRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVK 652

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S   +N L  E+ +S+  K+    + +            AD+ RL Q+ S  ++NA+ F+
Sbjct: 653 SDTDVNLLCGEIIRSLRMKVPA-GVELVFEKCLPECHVWADKNRLNQVISNFINNALKFT 711

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             GS  +    + +G   F V++ G  IP++  K+VF+RFV         G GLGLSI +
Sbjct: 712 FSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH--GTGLGLSICK 769

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           S +   GG + + S +   +      P ++
Sbjct: 770 SLVEQMGGTIGVESEEGEGSCFWFTYPYQD 799


>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
 gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
          Length = 2059

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 120/242 (49%), Gaps = 12/242 (4%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             E    A   K+ F+ ++S+E+R+P+  IIG TDL   ++   L ++Q +Y+  + +S+ 
Sbjct: 1346 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTE---LTAEQREYLTMVQSSAG 1402

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL ++NDILD + ++AG ++L+ S   L   L +  +++A + H+  + +       + 
Sbjct: 1403 SLLTIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKTLAWRAHQKGLELVCDIASDIP 1462

Query: 679  -SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGD-FIFSVKNNGSSIPED 733
             S V D  RL QI + ++ NA+ F+S+G     V +    D      FSV ++G  IP++
Sbjct: 1463 DSLVGDPGRLRQIVTNLVGNAIKFTSEGEVDLVVKIDKYIDGEVLLRFSVIDSGIGIPKE 1522

Query: 734  MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IP 789
                +F  F         +  G GLGL+I    + L  G + + S     +T       P
Sbjct: 1523 KLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLRVVSKPGKGSTFEFTAQFP 1582

Query: 790  SK 791
            +K
Sbjct: 1583 TK 1584


>gi|85714073|ref|ZP_01045062.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85699199|gb|EAQ37067.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 752

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 154/367 (41%), Gaps = 16/367 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +      +   + + +   +G I   N A+  L +             ++    
Sbjct: 101 ELKEAEERSRCLFESQGDLIVLRDGNGIITSVNDAYCILAQ---------RSRADLLGIR 151

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                   G  +  A  T   D+R         ++       I     A+      +VTD
Sbjct: 152 FALPVLEQGESVIEANGTRVYDQRVETALGPRWIAWREALMRIDANHPAELQCVGRDVTD 211

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              A+RAL E  +    A++ K+ F+   S+E R+PL  IIG + LL  +   +L  +Q+
Sbjct: 212 RTEAKRALGEARDHANAANQAKSRFLAMTSHEFRTPLNGIIGMSGLLLET---ALTPEQT 268

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            YV+ + AS   LL+L+ ++LD + ++AG + L +   +L+DL+ ++ + +A +     +
Sbjct: 269 TYVKAVKASGDALLSLIEELLDYSRIEAGKIDLEHRPFILSDLIEDITELLAPRAQARQL 328

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725
            I    D  L +  + D  RL Q+   +  NA+ F+S G   +I+       D  F V++
Sbjct: 329 AIASYIDETLPTEVIGDAARLRQVLLNLAGNAIKFTSTGGVALIVTPGVGRNDIRFMVRD 388

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  D    +F  F     +      G GLGLSI +  +   GGH+++ S     +T
Sbjct: 389 TGIGIAPDAQARIFRDFEQADGQIARNYGGSGLGLSISDRIVKRMGGHITLQSEPGSGST 448

Query: 784 INCRIPS 790
               +P 
Sbjct: 449 FEVSVPL 455


>gi|83309666|ref|YP_419930.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944507|dbj|BAE49371.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 755

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 157/381 (41%), Gaps = 23/381 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           + E +          T +  + G+     D R    N  F  +       L  G    + 
Sbjct: 375 EREARLTESEDRFRATFEQAAVGMCHTTLDRRFIRINSRFAEMLGCAPQEL-IGRSASDF 433

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLE--------LLSDSVLEYSIIPL 533
                R         +      S   E++ L   GT+         L  D  +EY I   
Sbjct: 434 THPDDRKLGLDGIDHIIQGTRESNSIEKRYLRKDGTIVWANLTVSALRRDGQVEYII--- 490

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                     +++   RAE  L    E    A   K+ F+  +S+ELR+PL  IIGF + 
Sbjct: 491 ------GVAEDISWRKRAEDELRAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAET 544

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           + +  LG +  +  +Y   ISAS   LL ++ DILDLA ++AG M+L+   + +  +++ 
Sbjct: 545 MYSQVLGPMPERYREYAGDISASGRHLLGIITDILDLAKIEAGRMELDDRPMEIAPVVDV 604

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + +  +     + +       L   +AD +R+ Q+   +L+NA+ F+  G  V + A+
Sbjct: 605 ALRLLRDRGAAAGLNLISDLPPGLPQVMADERRIRQVVINLLANAVKFTPFGGRVTVSAS 664

Query: 714 RD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
              +G     V + G  + E+    V   FV    R   +  G GLGL +V + + +HGG
Sbjct: 665 LTPDGGLELHVSDTGIGMTEEEAAQVIEPFVQVDARIARRHEGTGLGLPMVAAIMEMHGG 724

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            ++I+S  +  T +    P +
Sbjct: 725 AIAIASQPDAGTRVTVTFPPR 745



 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 56/185 (30%), Gaps = 20/185 (10%)

Query: 283 LNSFGEAGIAIDV------SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           +   GE G   D        +E  + +             V +     +R     N  F 
Sbjct: 356 IGEVGEMGDTFDTMVGALNEREARLTESEDRFRATFEQAAVGMCHTTLDRRFIRINSRFA 415

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           E+       L    ++D             + ++      +I    + S + +  +   +
Sbjct: 416 EMLGCAPQELIGRSASD--FTHPDDRKLGLDGID------HIIQGTRESNSIEKRYLRKD 467

Query: 397 GQTLH--VIVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           G  +   + V++  R G     I + E+++ +   E +     +         S+ +A  
Sbjct: 468 GTIVWANLTVSALRRDGQVEYIIGVAEDISWRKRAEDELRAAKEQAESASRAKSDFLAGM 527

Query: 451 GPDGR 455
             + R
Sbjct: 528 SHELR 532


>gi|217037911|gb|ACJ76427.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 179/394 (45%), Gaps = 30/394 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + LT++ +L  +            ++  + + +     ++   N ++  L       +
Sbjct: 257 LIQTLTIKREL-IRSEKEKTKLALVAEYAHDAIFILDKQSKLTWINQSYSVLSGNTLEDI 315

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIIT----SFDDERKSLQGTLELLSDSVLEYSI 530
             G  + ++          ++ + L  ++ T    SF+       GTL       ++ S+
Sbjct: 316 K-GKDLPSVLQL--DKIQHANIFTLLQSLKTGTSVSFELTNNHKDGTLY-----WIDVSV 367

Query: 531 IPL--PNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P+  PN   M       ++T     E  L +  +    +++ K++F+  +S+ELR+PL 
Sbjct: 368 TPIFKPNGNIMHYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLN 427

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G   +++++     + +Q + ++ +  S   LL+L+NDILD + ++   ++LN+++ 
Sbjct: 428 GILGMAQIIESNIK---DEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASF 484

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             ND+++ +  +  +   +  ++  + ++  +   F+ D+ R+ QI   ++SNA+ F+ K
Sbjct: 485 YFNDVIDPIANTYLSICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHK 544

Query: 705 GSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
           GS + L  +              V++ G  I +   K +F  F+       R   G GLG
Sbjct: 545 GS-ITLNFSHTLTPKGEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLG 603

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L+IV+   +   G++S++SS+   T     +P +
Sbjct: 604 LTIVKQLTDTMKGYISVNSSEGKGTCFTLVLPLE 637


>gi|218128652|ref|ZP_03457456.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
 gi|217989107|gb|EEC55422.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
          Length = 983

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/499 (19%), Positives = 205/499 (41%), Gaps = 24/499 (4%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L    ++L N+      + Q + +   N     +  I+   L       +  +   +++ 
Sbjct: 349 LRSHNKLLENMP---VFYVQEQVMFNENGIPESMRYINANILFKELFCSKQKQEQVNSSM 405

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNPRGGTIWMF-ENLTVQ 422
            P Q   + + +    V++   +   T++         VI+        I +F  N T  
Sbjct: 406 FPHQTE-EYFMQFARIVFQERRSIVFTYYFEEQNAFYEVIIRQAAEENLIDIFGVNTTTL 464

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS--NPA-FRSLWKTEE----NRLS 475
              +             +D        +           N + F      ++      + 
Sbjct: 465 HQTQELLRAANNKLALALDIAHIIPWHWDLQKHAITCDANRSPFELATGVKDERGVRIIH 524

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +  NI    +    +     +   +    ++ R  ++   +   + V   +++   N
Sbjct: 525 EADYFNNIHPDDAERIRDDYQALILGRVKALKEEFRTVIKKNGKEYINWVEARAVVEQRN 584

Query: 536 AQTMLTFVN-----VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            Q     +      +TD  R E+ L        ++D +K++F+ ++S+E+R+PL  I+GF
Sbjct: 585 EQGHPISLIGSLLIITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGF 644

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + +L T++     S+   Y+  I  ++ +LL L++D+LD+A ++A  +  NYS++ LN L
Sbjct: 645 SSILATAEEEEEKSE---YINIIENNNQLLLQLISDVLDIAKIEASSLDFNYSSLDLNVL 701

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +NE++ +   ++   ++ +++I D      + +R RL QI   +L+NA+ F+ KG  +  
Sbjct: 702 MNELESTALMRITSPDVCLEMIPDSDNCWVITERNRLSQIIINLLNNAIKFTQKG-KITF 760

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
                     F V + G  IP +    +F RF+   +  Q  G GLGLSI +S ++  GG
Sbjct: 761 GYKLQKEKIYFYVTDTGCGIPAEKQDKIFERFIKLNNFAQ--GTGLGLSICKSIVDAMGG 818

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S     +T    +P
Sbjct: 819 EIGVDSKVGNGSTFWFTLP 837


>gi|66811194|ref|XP_639305.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74854804|sp|Q54RP6|DHKL_DICDI RecName: Full=Hybrid signal transduction histidine kinase L
 gi|60467894|gb|EAL65907.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1709

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 170/380 (44%), Gaps = 29/380 (7%)

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            +          +     I++  + V ++ P G I+  N AF  +       L        
Sbjct: 691  LKKAESLKDATRKMVTCIENSPDCVEIWDPSGHIQYLNLAFSEMTGFARWEL-------- 742

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
                   + N  D  ++   +  +  D +K+  G +    ++      E SI P+ +   
Sbjct: 743  ---LGKEFSNLIDNTEIIPNMWATLTD-KKTWNGFIRTRHNNNTLIYFEASISPVLDQFQ 798

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEI-KNSF-VQHVSYELRSPLTNIIGFTDLLKT 596
             + + N T     ++ + E+++ L +   I K+   +  +S+++R+P++NIIG  DLL  
Sbjct: 799  QILYYNCTKRDVTQKRIDEESKTLEQNKIIEKSRLRLSMMSHDIRTPMSNIIGMADLLLD 858

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   SL+  Q  Y+E I  SS  LL ++NDILD++ ++AG + ++Y +   N  +++V +
Sbjct: 859  T---SLSQHQHHYLEIIKNSSNTLLTIINDILDISKIEAGKLDIDYESFDFNATVSQVVE 915

Query: 657  SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S+A ++    + +    D K+ +  +    RL QI + +L N++ F+ KG   I     D
Sbjct: 916  SMAQRVQSKGLELLSYVDPKIPNILIGPSSRLNQILTNLLGNSLKFTDKGEISICCLLND 975

Query: 716  NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL-H 768
              D        V++ G  I ++    +F  F         Q  G GLGL+I +  ++L  
Sbjct: 976  ETDSEYEIKVDVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVHLAF 1035

Query: 769  GGHVSISSSDEGVTTINCRI 788
             G +S+ S     +T  C +
Sbjct: 1036 NGEISVESQYGHGSTFTCIL 1055


>gi|169334382|ref|ZP_02861575.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259099|gb|EDS73065.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1210

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/533 (20%), Positives = 212/533 (39%), Gaps = 54/533 (10%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN----RSFVELWEIDLAFLAT 348
           +D+ +      ++T   + L ++  ++        L++HN     +F+ +    L     
Sbjct: 407 LDIDELQQSTLKVTEQKDFLDSIYNSVMC----GILRYHNVGGEFAFIMMNNEALKIFGY 462

Query: 349 NPSNDELLEFLRS---ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
             + +E L+  R         E  ++   K N       + + +     PNG+   V  T
Sbjct: 463 E-TEEECLKLGREEFLNRVYYEDRDYILSKINSLRDVGENFSEEYRIKRPNGEIRWVYAT 521

Query: 406 S---NPRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI-KL 458
           S       G I    +  ++T +  LE +   L  +     D       V   D +  + 
Sbjct: 522 SEMVKDAKGNILNQRVMMDITDRKKLEIEER-LSGIIRTAYD------VVVDIDLKTGEY 574

Query: 459 SNPAFRSLWKTEENRLSPGTHI-----RNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
               F  +   ++N  +           +I    ++Y   + G      I  +  D RK 
Sbjct: 575 IENDFSEMSYFKKNYGNYKRSFLQMLRHDIDHRDTKYIANTLGIKNLRHIAENKQDVRK- 633

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-----VTDSVRAE-------RALTEKNEA 561
           L     L  D         + N+      +N     +TD ++ E       RAL +  + 
Sbjct: 634 LSCKYRLREDENKWIEATAIFNSGQNRNRINLIIRDITDQIKQEELIEAQNRALEKALKK 693

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+E K+ F+  +S+++R+P+  I+G T + K S       +    ++ I  SS  LL
Sbjct: 694 ANAANEAKSLFLSSMSHDIRTPMNGIVGMTTVAKESIKN--EDRIKDCLDKIDVSSKHLL 751

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+NDILD++ +++G + L    + ++DL ++    I ++  E N  I+   D +  + +
Sbjct: 752 SLINDILDMSRIESGNLILKEENVNISDLFHDTLTIILSQAKEKNQNIRFDIDVEHENII 811

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMC 735
            D  RL Q+F  ILSNA+ F+     + +             D+ F   ++G  I ++  
Sbjct: 812 VDSLRLQQVFINILSNAIKFTEYNGNIDINIYELPQTKQGYADYKFEFIDDGIGISKEFI 871

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            ++F  F        G+ +G GLG++I +  +++ GG + + S     T    
Sbjct: 872 DNIFEPFERENKEMSGKIQGTGLGMTITKRILDMMGGKILVRSELGKGTCFTV 924


>gi|254689786|ref|ZP_05153040.1| sensory box histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|256258039|ref|ZP_05463575.1| sensory box histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260755316|ref|ZP_05867664.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 6 str. 870]
 gi|260884335|ref|ZP_05895949.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 9 str. C68]
 gi|297248868|ref|ZP_06932586.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5
            str. B3196]
 gi|260675424|gb|EEX62245.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 6 str. 870]
 gi|260873863|gb|EEX80932.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 9 str. C68]
 gi|297176037|gb|EFH35384.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5
            str. B3196]
          Length = 1035

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMLLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1014

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/429 (20%), Positives = 152/429 (35%), Gaps = 56/429 (13%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-EENR 473
           +   L  Q              G  + ++  GV +    G I + NP F  L+       
Sbjct: 144 LHHTLLEQARTAEALACTSTRLGILVQNMQAGVLMTDAQGTIVVVNPEFARLFNLGFPAD 203

Query: 474 LSPGTHIRNIAATCSRYYNESDG----------WDLFAAIITSFDDER------------ 511
           L  G ++  IA   +   +   G           +    +  + +D R            
Sbjct: 204 LLLGKNLTAIAPRINGLISHGQGVTHNFLAIESPEPLLKVELALEDGRFFERDYVPIMLG 263

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            S QG   L  D      +  +      +            + L     A   A+  K+ 
Sbjct: 264 DSSQGHFWLYRDISQRKQVEMIQGQSLEMERRMRQQLAEQNQELVAATTAAEAANRSKSE 323

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  IIG T LL  +    L ++Q  + + I  S   LL L+NDILD +
Sbjct: 324 FLATMSHEIRTPMNAIIGMTGLLLDT---DLTTQQKYFAQTIRNSGETLLTLINDILDFS 380

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQI 690
            ++AG + L      L   L E    +     + ++ + +        +   D  RL QI
Sbjct: 381 KIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQI 440

Query: 691 FSKILSNAMDFSSKGST-VILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVS 744
              +LSNA+ F+  G   V ++    +         F+V++ G  I  +  +++F  F  
Sbjct: 441 LVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQ 500

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-------DE---------GVTTINC 786
                 RR  G GLGL+I      L GG +   S+        E           +T   
Sbjct: 501 GNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVGNPPELWQIGQPTIEGSTFYF 560

Query: 787 R-----IPS 790
                 +PS
Sbjct: 561 TVNLTVLPS 569



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 10/140 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQL 369
           ++ N+   + + D    +   N  F  L+ +   A L    +   +   +       + +
Sbjct: 168 LVQNMQAGVLMTDAQGTIVVVNPEFARLFNLGFPADLLLGKNLTAIAPRINGLISHGQGV 227

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDL 425
                  N  ++       K    L +G+           G    G  W++ +++ +  +
Sbjct: 228 T-----HNFLAIESPEPLLKVELALEDGRFFERDYVPIMLGDSSQGHFWLYRDISQRKQV 282

Query: 426 ETKYNTLVKVQGETIDHLSE 445
           E      ++++      L+E
Sbjct: 283 EMIQGQSLEMERRMRQQLAE 302


>gi|218248058|ref|YP_002373429.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218168536|gb|ACK67273.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 763

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 145/292 (49%), Gaps = 10/292 (3%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           FD E+  L    + L+ ++ +  +      Q       V +  +    L +   A + A+
Sbjct: 327 FDSEKNFLGQIGQHLAVAIYQAQLYAQVQEQKKTFEQRVIERTQ---ELRDTLIAAQSAN 383

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTILLNL 623
             K+ F+ ++S+ELR+PLT IIG +  L      S +    KQ QY++ I  S   LL +
Sbjct: 384 HSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQTIQDSGKHLLEM 443

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGSFV 681
           +N+IL+ + ++AG   L+     L      + + +  +  +   N+++++  + +   F 
Sbjct: 444 INEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQLELQIEPQENFFF 503

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +RL QI   +L+NA+ F+ +G TVIL+  R+  + IF V++ G  I ++    +F  
Sbjct: 504 ADPERLQQILYHLLNNALKFTPEGGTVILRIWREGNEAIFQVEDTGIGIAQEQIPLLFES 563

Query: 742 FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F     + R    G GLGL++ +  + LHGG + + S  +  +    R+P++
Sbjct: 564 FQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVESILQEGSIFTVRLPNQ 615


>gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|125714554|gb|ABN53046.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           1313]
          Length = 932

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 141/291 (48%), Gaps = 17/291 (5%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV-TDSVRAERALTEKNEALRK 564
           SFDDE         L+    +E +++     +   +F N      +AE  +    +   K
Sbjct: 281 SFDDE------EFRLVPKGTVELNMLAENFNELYRSFHNELVRRKKAEETMKAARDEADK 334

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+P+ +IIG+  LLK S    L+ KQ +YVE I  ++  LL ++
Sbjct: 335 ANRAKSEFLASMSHEIRTPINSIIGYQYLLKNSV---LSPKQREYVENIGLAAKNLLAII 391

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           N ILD + ++AG M L      ++D+LNE+   +  +     I +++  D  +  F+  D
Sbjct: 392 NQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGD 451

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVF 739
             RL Q+   ++SN + F+ +G   + ++    N +     FSV + G  I ++  K +F
Sbjct: 452 ITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLF 511

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F        R   G GLGL+I +  + L  G +++ S     +T +  +
Sbjct: 512 QAFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562


>gi|117924517|ref|YP_865134.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608273|gb|ABK43728.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 803

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 161/397 (40%), Gaps = 27/397 (6%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           + +F NL        +    + +  E     ++  +EG+  +         +P + ++  
Sbjct: 143 VAIFLNLYNAHRESEQLRQDLTLNQERLELALEGANEGLWDWNILSNQVYYSPRWITMLG 202

Query: 469 T----------EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
                          L       +  A   R++   +           F    K      
Sbjct: 203 YATNEVNQDFSTWKTLIHPDDFESALACLERHFTTPE-----EPYRAEFRMRTKQGGWCW 257

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L    V+  +    P+ + +    +++   + E  L        +A++ K+ F+ ++S+
Sbjct: 258 ILARGKVVARTADGQPH-RMVGAHQDISQRKQLEADLLAAKTEAEQANQAKSRFLANMSH 316

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  I+G  ++L  +   +L  KQ +Y+     +   LL L+NDILDL+ ++AG +
Sbjct: 317 EIRTPMNTILGMGEILLNAP--NLTPKQHRYLSISQRAGDTLLGLINDILDLSKIEAGEL 374

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
            L ++   L+D L  +   +     +  + ++ + D +L      D QR  QI   +LSN
Sbjct: 375 HLEHTLFALHDELKSLITMLRPMARDKGLSMQCVIDPQLPTHVHGDPQRFRQIVLNLLSN 434

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A+ F+ +GS  +     + G   F+V + G  +PE +   +F  FV       RR  G G
Sbjct: 435 ALKFTDQGSITLHAKPIETGRLQFTVSDTGIGMPEQVITKIFRPFVQAEANTTRRFGGTG 494

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPS 790
           LGLSI    + +  G +  +S     +       +P+
Sbjct: 495 LGLSICRQLVTMMHGEIYANSQVGEGSQFIFEIELPA 531


>gi|322381789|ref|ZP_08055743.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154177|gb|EFX46499.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 596

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/402 (22%), Positives = 166/402 (41%), Gaps = 22/402 (5%)

Query: 399 TLHVIVTSNPRGGTIW-MFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V + SN   G +   F  +  Q++   +  +   +     +  +++ V     DG +
Sbjct: 200 TTKVPIVSNDEIGELAKTFNRMGGQLEETIRVLSHQKEQMSSVLRSMTDAVISLDADGNV 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L+NP  + + K              I  + S+  +     D    +      E K    
Sbjct: 260 MLTNPQGQKIIKDWGKIDWNRNASTAILDSDSQLSHPLTLPDPLQRLFDYVITEAKETFT 319

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            L + ++ V    + PL     ++  V V   V  E           + D+++  FV +V
Sbjct: 320 KLHVQNE-VWSVVMTPLYGQNQVVGAVAVLRDVTEE----------HRMDKLRKDFVANV 368

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL+ + G+++ L     G+ + +  +  + I   S  +  LV D+LDLA ++AG
Sbjct: 369 SHELRTPLSMVQGYSEALIDDIAGTPDER-KELAQVIHDESLRMGRLVKDLLDLAKMEAG 427

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKIL 695
            M + +  + +N L   +++  +    E  IR+     +G       D  RL Q+ + +L
Sbjct: 428 HMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGNHLVIEGDEDRLEQVLTNLL 487

Query: 696 SNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA   +    +V L+A           +  V++ G  IP +    VF RF        R
Sbjct: 488 DNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPAEDVPYVFERFYKADKARTR 547

Query: 752 R---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               G GLGL+IV++ I+ H G V + S     TT +  +P 
Sbjct: 548 GASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLPK 589


>gi|92118136|ref|YP_577865.1| multi-sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
 gi|91801030|gb|ABE63405.1| multi-sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
          Length = 614

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 171/383 (44%), Gaps = 25/383 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-----TEENRLSPGTHI 480
           E +Y  L +       ++ + ++    +G ++  +PA  +L        +++ L    H+
Sbjct: 199 EDRYRLLAR-------NMCDVISRHRRNGAVQFISPAAEALLGVPASELQDHGLFDRVHV 251

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNA--- 536
            +  A  +     + G D  +       D  ++ QG     +D + +E    PL  A   
Sbjct: 252 ADRPAYLTALAAAALGNDGQSVEFRLRRDVARASQGEARHSADFIWVEMRCRPLEPASAA 311

Query: 537 ------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                 + +    ++T+    E AL        +AD  K  F+  +S+ELR+PL  IIGF
Sbjct: 312 GTSAEPEVVAVMRDITERKHQEHALDLALTTAERADAAKTRFLATMSHELRTPLNAIIGF 371

Query: 591 TDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           ++++      SL++ ++ +Y + I+ S   LL++VN ILD++ +++G  ++        +
Sbjct: 372 SEMMVQEDALSLDAARRKEYAQLINDSGQHLLSVVNSILDISKMESGNFEILPEPFAPRE 431

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +L      +A K  +N I +       L     D +   QI   ++SNA+ F+ +G  V 
Sbjct: 432 VLLNSSNLLALKARDNGIELVTRVPEDLPQITGDPRAFRQIVLNLVSNAVKFTERGGRVT 491

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           + A  +    +  V +NG  I ++  K + + F         +  G GLGLSIV+S + L
Sbjct: 492 ISARVEGSRMVLRVMDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVAL 551

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           H G + + S  E  TT+   +P 
Sbjct: 552 HRGEIDVQSKVEEGTTVTVMLPL 574


>gi|168182604|ref|ZP_02617268.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|237795966|ref|YP_002863518.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182674114|gb|EDT86075.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|229263502|gb|ACQ54535.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 569

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 166/396 (41%), Gaps = 37/396 (9%)

Query: 401 HVIVTSNPRGGTIW-MFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VI+ S    G +   F    ++     +E +           +  +  GV     + ++
Sbjct: 202 RVIINSEDEIGRLGRTFNAMADILENSLVEVRDKQ--NRLEAILKSMDSGVVAIDKEFKV 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP    L+  + + +  G ++ +            D    +  I   + ++R     
Sbjct: 260 IMINPYANKLFGIKRDII--GENLMDNIRDFELEKVLKDKEPGYKEIGILWPEKRTLRVK 317

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +++S            N  T+    ++TD  + E               ++  FV +V
Sbjct: 318 TTDIISK---------YDNIGTVAVVQDITDIKKLE--------------NMREQFVANV 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF++ LK          + ++++ I+  +  L  L+NDIL L+ ++  
Sbjct: 355 SHELKTPLTSIKGFSETLK---YVDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQ 411

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L    I LN+L+ +V   +       NI+I ++ + K+   + ++ +  Q+   ++ 
Sbjct: 412 KQELIKEKIDLNELIEKVYCLVKKSAENKNIKINIVGE-KVPLLIGNKDKYNQMIINLVD 470

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ ++     V +   +D G+ +F V++ G  I E+    +F RF        R   G 
Sbjct: 471 NAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGT 530

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    G + + S  +  T    +IP 
Sbjct: 531 GLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPL 566



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSK--EI 299
           LF   I   MI      +     ++  +            +   G    A+ D+ +   +
Sbjct: 171 LFSSRISMAMIKPIKNLEFVTSRIARGDFDRRVIINSEDEIGRLGRTFNAMADILENSLV 230

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V D+      IL ++   +   D+   +   N    +L+ I    +      + L++ +
Sbjct: 231 EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPYANKLFGIKRDIIG-----ENLMDNI 285

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWM 415
           R         + +   + I  ++            P  +TL V    I++     GT+ +
Sbjct: 286 RDFELEKVLKDKEPGYKEIGILW------------PEKRTLRVKTTDIISKYDNIGTVAV 333

Query: 416 FENLTVQVDLE 426
            +++T    LE
Sbjct: 334 VQDITDIKKLE 344


>gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 685

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/494 (21%), Positives = 190/494 (38%), Gaps = 46/494 (9%)

Query: 328 LQFHNRSFVELW-----------EIDLAFLATN-PSNDELLEF----LRSANKLPEQLNW 371
           L++ N  + E +            + L  L    P  D  L+     +    ++PE    
Sbjct: 55  LEYANSRWAEPFVWTSSVPSAACPLPLPTLDDMAPLLDTFLQRKELCISDTGQMPEGPQK 114

Query: 372 KTW-KENIFSVYKSSETHKDTWHLPNGQTLHVIVT--SNPRGGTIWMFENLTVQV----D 424
           K +    + +       H+         T  +     S        +  N+   V     
Sbjct: 115 KFFLARQVRAALCIPIVHEGGLCGGICLTRRISGQGWSQDDVNICHLLSNILAMVLTHFR 174

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           L  +     K   + +D     V +   +  RI  SN +    + T +       H R +
Sbjct: 175 LYGRLRQKHKQLRDILDAFPNPVCIVDMETNRILFSNKSVAETFPTPQESEDDKCHKRLM 234

Query: 484 AATCS-RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                  Y           A   ++ +E  +   T+    D V+++     P   ++ T 
Sbjct: 235 GRDSPCPYCTNPIIRRTGEAYQWTYQNEVTNRTYTVV---DKVIKWD-NDRPVRLSISTD 290

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGS 601
           +      R E+      ++   A + K  F+ H+S+E+R+PL  IIG T L L++   G 
Sbjct: 291 ITDILRTRHEK------QSAVIASQAKTEFLAHMSHEIRTPLNGIIGLTHLALQSGPDGE 344

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L     +Y+  I +SST LL ++ND+LDL+ ++A  M+L     ++ ++L+ V  S+   
Sbjct: 345 L----KEYLLKIRSSSTNLLAIINDVLDLSKIEANKMELENVNFMVEEVLDFVHTSVRFA 400

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG 717
           M +  +  +   D  +      D  RL Q+   ++SNA+ F+++G     +  +   D  
Sbjct: 401 MEQKGLEYQCHLDDDVPLKLWGDSLRLKQVLLNLMSNAVKFTARGKVGLRIHRQQDDDGD 460

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F V + G  I  +  + +F+ +        RR  G GLGLSI +    L  G +   
Sbjct: 461 WLHFEVSDTGMGISHEYQQHLFDPYTQANSSISRRFGGTGLGLSICKRIAELMQGSLWCE 520

Query: 776 SSDEGVTTINCRIP 789
           S     +  + RIP
Sbjct: 521 SRLGEGSRFHLRIP 534


>gi|284035081|ref|YP_003385011.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
 gi|283814374|gb|ADB36212.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
          Length = 1178

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/648 (16%), Positives = 234/648 (36%), Gaps = 46/648 (7%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ-AGDILWANISYKKNTETEGI 231
            G   ++ +      +L       ++   +    +W  D   G ++W    ++ +  T  +
Sbjct: 544  GSARDITDRQAAEDQLYQLHERLQLATKAAGQGIWENDLINGKVIWDERLWELHGLTLPV 603

Query: 232  VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-----EHGNNKSYKI--VRVLN 284
                       +  +++   M  +        + V+ +      +G  +  +     + +
Sbjct: 604  RPLTFADFLSFVHPDDLPALMAKAHTELVGKEDAVTNVYRIVCPNGMVRYLETNGRIIRD 663

Query: 285  SFGEA----GIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            S G+A    G+A DV++    E  +         ++ +L   +   D      + N +  
Sbjct: 664  SSGKAIRLIGVAWDVTRRKLDEENLRTSEQRYRSLVDHLDTIVFQTDAKGKWVYLNPA-- 721

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLP 395
              WE+   F          L+ +     LPE     +   E I +  +    H   +   
Sbjct: 722  --WEVVTGFSVEESLGGYFLDSI-----LPEDHTETRQLFEEIKAGQRMGVRHTIRYIRK 774

Query: 396  NGQTLHVIVTS-------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             G    + V +       + R G      ++T +   E       +   E  +++ E   
Sbjct: 775  GGGYRWIDVNAQVLLRDGHVRMGVTGTLTDITERKMAEEAIQESEQRFREIAENVDEVFC 834

Query: 449  VFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIR--NIAATCSRYYNESDGWDLFAAIIT 505
            +      R    NPAF          +   + +    I               +  + +T
Sbjct: 835  ILDSKKPRFLYVNPAFEKFTGVSSPEIYRNSSLFLPRIVEEDRSLIQTIFQNSVSGSELT 894

Query: 506  SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                  +   G+L  L+  V   +       + +    ++T ++  E+ L    +  R  
Sbjct: 895  F---RARHQDGSLRWLNARVFGVTNEAGVLIRRIGVATDITTAIEKEQILEASLQNERTL 951

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTILL 621
            + +K+ F+   S+E R+PL  I   T+L    +    +  +    ++++  I      L 
Sbjct: 952  NTLKSQFITTASHEFRTPLMGISSSTELVKHYMAREDIRPVLPIINKHLTAILTKVASLN 1011

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             L+ D L L+ ++ G + +  ++  L  L   +  S +    +   +I     GK  + +
Sbjct: 1012 ELIGDTLTLSKIEQGKIDVQLTSTDLAALCKSLVASTSADSKDKR-QIDFQVIGKDVALL 1070

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
             D++ +  I + +L NA+ FS+K  +V L       D   +V + G  IP+     +F++
Sbjct: 1071 VDKKLINHILTNLLMNAIKFSTK--SVSLTLTYGLTDVKIAVSDQGIGIPKKDLPHLFDK 1128

Query: 742  FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F    +    +G GLGL+I + +INL  G + ++S +   TT    +P
Sbjct: 1129 FFRAGNATNYQGSGLGLAICQEYINLMQGQIGVASKEGAGTTFTITLP 1176



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 111/375 (29%), Gaps = 55/375 (14%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           + A LR      +   +AE T + ++LS    +   +       +   +  G +   N +
Sbjct: 278 AKALLR-KKNSQLEKGIAERTKQVRQLST---LQNAILKHAGQAIISTNSDGIVQTVNQA 333

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRM-----------------ISSSALEKNFCE 264
            +      G    + IG+  +L  E     +                    +  E  + +
Sbjct: 334 TETLL---GFSASELIGKVARLKSESTHSSLPVITFSPYDSEEVHNFFAQPTVAEYGYVQ 390

Query: 265 TVSTLEHGNNKS----YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLT 316
               L   N +       + ++ N  G      GIA D+S       +L    +IL    
Sbjct: 391 QECLLATRNGRLAPVLLTVSQLKNEDGSVLGYMGIATDISALKLAEAKLRQKNQILDTFF 450

Query: 317 VAI----AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
                   I D+  +L   N +F ++     + L T P     L+ +      P +    
Sbjct: 451 AGALDMHCIADRKGFLLEVNHAFQDVMGYSASELKTIP----FLQLIH-----PAEKAMV 501

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGGTIWMFENLTVQVDLETKYN 430
           + +    S  +      + W   +G T  +I  S     G       ++T +   E +  
Sbjct: 502 STEVLKKSQQEPVRNRINKWRCKDG-TYRIIEWSAIGVDGLVYGSARDITDRQAAEDQLY 560

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-------TEENRLSPGTHIRNI 483
            L +          +G+          + +     L                   H  ++
Sbjct: 561 QLHERLQLATKAAGQGIWENDLINGKVIWDERLWELHGLTLPVRPLTFADFLSFVHPDDL 620

Query: 484 AATCSRYYNESDGWD 498
            A  ++ + E  G +
Sbjct: 621 PALMAKAHTELVGKE 635



 Score = 38.0 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 104/338 (30%), Gaps = 48/338 (14%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
              +   + EL +   +    S                 W    AG +L    S  +   
Sbjct: 25  FAPVYNEHGELVDLQRRMAAPSTPSDYLAGTC----LSDWVAPSAGAVLNRLWSLLEQGT 80

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
              + +Q A  ++ +L    ++   +     +        + E       + +     + 
Sbjct: 81  VCRLTYQPAPDQTSQLLITPMEGGYLVELLADNPADAISVSTESEIVSVGQTIEQRTDYS 140

Query: 288 EAGIAIDVSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWE----ID 342
               A  +SK+ +  D      E I+ N  V +A+                +W+    ID
Sbjct: 141 AQAGARGLSKQASSLDATNQLLEAIVSNTPVGLALLRP-------------VWQSGCLID 187

Query: 343 LAFLATNPSNDELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----- 395
            ++L TNP++  L+ +  ++ A +  + L+       +F           + H       
Sbjct: 188 FSYLWTNPAHAALIGYSIIQLAGQRFKALHPSAASAGLFDRLADVAQTGQSLHYQKQVQH 247

Query: 396 NGQTLHVIVTSNPRG-GTIWMFENLTVQVDL------------------ETKYNTLVKVQ 436
           +G +L    T    G   ++   +++  ++                     +   L  +Q
Sbjct: 248 DGLSLWGEFTIIRVGENVLFTVMDISPLMEAKALLRKKNSQLEKGIAERTKQVRQLSTLQ 307

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              + H  + +     DG ++  N A  +L     + L
Sbjct: 308 NAILKHAGQAIISTNSDGIVQTVNQATETLLGFSASEL 345


>gi|240142103|ref|YP_002966613.1| putative multi-sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240012047|gb|ACS43272.1| putative multi-sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 1223

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/643 (17%), Positives = 238/643 (37%), Gaps = 47/643 (7%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI------SYKKNTETEGIVFQKAIGES 240
           +L +   + +   + +   +   D  G ++ AN        Y    +  G   ++ +   
Sbjct: 325 ELQSKSELLEATLEGVGQGIALFDIDGRLVHANRLAAGWLGYATPEDAAGRTIEEILRAQ 384

Query: 241 RK---LFKEEIKKRMISSSALEKNFCETVSTL---EHGNNKSYKIVRVLNSFG-EAGIAI 293
            +      +E    + +    +     +   +      +    ++  +    G    +  
Sbjct: 385 IERGSFADDEDPDALYARMVSQCGTSSSGPVVCIMRMADGTCLEVKTISAHRGRTVRVYS 444

Query: 294 DVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           DV+     + T+ ++      +L N    I + D+++ L+  N     L  +    +   
Sbjct: 445 DVTDSLKAKATLEEKTLFLETVLENTGEGILVCDRDQRLRLVNGKAAALARVPPEAVVGL 504

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNP 408
                + +++  A +  E    ++  E I   +             + G+ L + + +NP
Sbjct: 505 ----RIADYVAMALEDTEGDTSRSRTEAILDRFLGGSEIAAGVRRHDLGRDLVLEIRTNP 560

Query: 409 --RGGTIWMFENLTVQVDLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIKLS 459
              GG + +  ++T              V  E       T+D + +G+     DGR+ ++
Sbjct: 561 LGDGGWVMVTTDVTTAHRNAEALEKSEAVLKEKSAALEITLDAIDQGILTVAADGRVAVA 620

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAAT--CSRYYNESDGWD----LFAAIITSFDDERKS 513
           N     L     + L PG H          + YY ES   +     +   + S+  +   
Sbjct: 621 NRRLPELMGVSPDTLLPGRHFGGAVRERFAAGYYPESAEVESRIGEYERFVASWPADLPP 680

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                       +E    PL     +LT  +VT    AE AL    EA    +  K++FV
Sbjct: 681 TVRVGSGPDGREIETFTRPLAGGGIVLTARDVTRQRAAESALEAAKEAAEAGNRAKSTFV 740

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+PL  +IG  ++L  +    L+ +Q +Y+  I      LL++V+DILD + +
Sbjct: 741 ATMSHEIRTPLNGVIGMAEVLSGT---DLDDRQREYLATIRECGDALLSIVSDILDFSKL 797

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFS 692
           +AG  +     + +      V   I       ++ + +   D      + D  RL Q+  
Sbjct: 798 EAGRTEFVQRPVDVEAGAKSVLDIIGATAAGGDVVVGLEIRDDVPRRVLTDGSRLRQVLL 857

Query: 693 KILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            +  NA+ F+  G  V+++ +           + ++++G+ I  +    +F  F    + 
Sbjct: 858 NLAGNAVKFTGAGGEVLIRLSMSGDGARRMLRYEIEDSGTPIAAEKRPLLFREFSQLGNG 917

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + G GLGL+I    +   GG +    +D+G       IP
Sbjct: 918 FIAGQGGTGLGLAISRRIVEGLGGSIGYKPTDDGTNVFWFEIP 960


>gi|258511694|ref|YP_003185128.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478420|gb|ACV58739.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 590

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 166/397 (41%), Gaps = 33/397 (8%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V +    G +   F  L  Q+     + +   +     +  L +GV     DGR+ L
Sbjct: 207 RVRVVTKDEVGRLGHTFNALARQLAETIEQLSMEREGLQRILSSLQDGVVATDLDGRVVL 266

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +NP  +              H+R+++       +E    D   ++     +++ ++    
Sbjct: 267 ANPPAKR-------------HLRHLSVAERGIVDEERLPDRLMSLWVRVREQQDAVYRE- 312

Query: 519 ELLSDSVLEYSIIPLP--NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +      +  +++PL   +  T+   + V   +  ER L          D ++  F+ +V
Sbjct: 313 DTWDGRTIGITMLPLYETDGTTLRGALCVLRDITEERRL----------DRLRKDFIANV 362

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL+ + G+T+ L    +      + +  E I   +  +  LVND+L+LA +++G
Sbjct: 363 SHELRTPLSMLQGYTEALLDD-ISDDPDMRRELTEIIHDETLRMKRLVNDLLNLAQLESG 421

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             KL+++ + L  ++  V +        E+++  +V           D  RL Q+F+ +L
Sbjct: 422 QFKLHFARVDLTQVMRRVARKFQALASDEDHLTFEVSIPDHPVMVDGDEDRLEQVFTNLL 481

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRG 753
            NA   +++G T+  +    +      V + GS IPE+    +F RF          R G
Sbjct: 482 DNAFRHTAQG-TIRFELDIRHDYAYVRVADTGSGIPEEDVPYIFERFYKADKARTRSRSG 540

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGL+I    +  H G + + S     TT    +P 
Sbjct: 541 TGLGLAIARQLVIEHRGEILVESHLGEGTTFTVVLPL 577



 Score = 41.1 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 26/186 (13%)

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAF------LRILSLDGIYS------ELAE-TTLK 184
              F  V        +    R +   A       +R+++ D +         LA      
Sbjct: 174 ATGFAFVISKNLSRPLVDMTRAAEEMARGHYRQRVRVVTKDEVGRLGHTFNALARQLAET 233

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
            ++LS      + +  SL   V   D  G ++ AN   K++     +  +  + E     
Sbjct: 234 IEQLSMEREGLQRILSSLQDGVVATDLDGRVVLANPPAKRHLRHLSVAERGIVDE----- 288

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-------VRVLNSFGEAGIAIDVSK 297
            E +  R++S     +   + V   +  + ++  I              G   +  D+++
Sbjct: 289 -ERLPDRLMSLWVRVREQQDAVYREDTWDGRTIGITMLPLYETDGTTLRGALCVLRDITE 347

Query: 298 EITVND 303
           E  ++ 
Sbjct: 348 ERRLDR 353



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 28/138 (20%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLATNPSNDELLE 357
             ++ +      IL +L   +   D +  +   N      L  + +A             
Sbjct: 235 EQLSMEREGLQRILSSLQDGVVATDLDGRVVLANPPAKRHLRHLSVAE-----------R 283

Query: 358 FLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------ 409
            +    +LP++L   W   +E   +VY+     +DTW   +G+T+ + +           
Sbjct: 284 GIVDEERLPDRLMSLWVRVREQQDAVYR-----EDTW---DGRTIGITMLPLYETDGTTL 335

Query: 410 GGTIWMFENLTVQVDLET 427
            G + +  ++T +  L+ 
Sbjct: 336 RGALCVLRDITEERRLDR 353


>gi|167465146|ref|ZP_02330235.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 602

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/402 (22%), Positives = 166/402 (41%), Gaps = 22/402 (5%)

Query: 399 TLHVIVTSNPRGGTIW-MFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V + SN   G +   F  +  Q++   +  +   +     +  +++ V     DG +
Sbjct: 206 TTKVPIVSNDEIGELAKTFNRMGGQLEETIRVLSHQKEQMSSVLRSMTDAVISLDADGNV 265

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L+NP  + + K              I  + S+  +     D    +      E K    
Sbjct: 266 MLTNPQGQKIIKDWGKIDWNRNASTAILDSDSQLSHPLTLPDPLQRLFDYVITEAKETFT 325

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            L + ++ V    + PL     ++  V V   V  E           + D+++  FV +V
Sbjct: 326 KLHVQNE-VWSVVMTPLYGQNQVVGAVAVLRDVTEE----------HRMDKLRKDFVANV 374

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL+ + G+++ L     G+ + +  +  + I   S  +  LV D+LDLA ++AG
Sbjct: 375 SHELRTPLSMVQGYSEALIDDIAGTPDER-KELAQVIHDESLRMGRLVKDLLDLAKMEAG 433

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKIL 695
            M + +  + +N L   +++  +    E  IR+     +G       D  RL Q+ + +L
Sbjct: 434 HMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGNHLVIEGDEDRLEQVLTNLL 493

Query: 696 SNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA   +    +V L+A           +  V++ G  IP +    VF RF        R
Sbjct: 494 DNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPAEDVPYVFERFYKADKARTR 553

Query: 752 R---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               G GLGL+IV++ I+ H G V + S     TT +  +P 
Sbjct: 554 GASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLPK 595


>gi|187478370|ref|YP_786394.1| virulence sensor protein [Bordetella avium 197N]
 gi|115422956|emb|CAJ49485.1| virulence sensor protein [Bordetella avium 197N]
          Length = 1219

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 156/389 (40%), Gaps = 14/389 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             ++   +  +   E   +  +      ID +   V V   +GR+   N ++   +    
Sbjct: 561 IYYLRRQIGKRRVAERALSDQLAFMRVLIDGIPNPVFVRDREGRMVTCNRSYLETFDVTR 620

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS----FDDERKSLQGTLELLSDSVLE 527
           + +   T I +          ++       A+  +    F D   +L G    +   +L 
Sbjct: 621 DAVQGRTLIDSPIGLEDPEQAKTVHQQYLDAMQHNSGAVFQDIEVTLHGEKRYIYHWLLP 680

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           YS         +  + ++T+ +R  R L E  E    A+  K++F+  +S+E+R+P+  I
Sbjct: 681 YSDSLGRVKGLIGGWTDLTERIRLLRDLHEAKEEADAANRAKSTFLATMSHEIRTPMNAI 740

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG  +L                ++    S+  LL+L+ DILD++ ++A  ++L+     L
Sbjct: 741 IGMLELELRRPADQATD--RSALQITYDSARSLLDLIGDILDISKIEADRLELSPHPTDL 798

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL+ +         ++ + + +  D       + D  RL Q+ S ++SNA+ F+  G 
Sbjct: 799 RKLLDGIINVFQGLARQHGLSLTLQIDPPHPPHVLLDATRLKQVISNLVSNALKFTEVGG 858

Query: 707 TVI---LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLS 759
            ++   ++   D       +V ++G  I     + +F  F      A   +  G GLGL 
Sbjct: 859 VIVSLKVRTEEDGRAKIELAVDDSGPGISSADRQRLFEPFTQVHDQAKAARAAGTGLGLV 918

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I    I   GGH  +SS     T I+  +
Sbjct: 919 ISRRLIEAMGGHFDLSSIPGKGTRIDVLL 947



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 62/160 (38%), Gaps = 13/160 (8%)

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY- 222
           A + +  +  +  ++ +  +  + LS+ ++  +VL D +   V+ RD+ G ++  N SY 
Sbjct: 554 ALIFLAWIYYLRRQIGKRRVAERALSDQLAFMRVLIDGIPNPVFVRDREGRMVTCNRSYL 613

Query: 223 ------KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK- 275
                 +   +   ++      E  +  K   ++ + +         + +    HG  + 
Sbjct: 614 ETFDVTRDAVQGRTLIDSPIGLEDPEQAKTVHQQYLDAMQHNSGAVFQDIEVTLHGEKRY 673

Query: 276 -SYKIVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYE 310
             + ++   +S G     I    D+++ I +   L    E
Sbjct: 674 IYHWLLPYSDSLGRVKGLIGGWTDLTERIRLLRDLHEAKE 713



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 16/152 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP------ 350
            E  ++DQL     ++  +   + + D+   +   NRS++E +++    +          
Sbjct: 574 AERALSDQLAFMRVLIDGIPNPVFVRDREGRMVTCNRSYLETFDVTRDAVQGRTLIDSPI 633

Query: 351 --SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-HVIVTSN 407
              + E  + +        Q N     ++I       + +   W LP   +L  V     
Sbjct: 634 GLEDPEQAKTVHQQYLDAMQHNSGAVFQDIEVTLHGEKRYIYHWLLPYSDSLGRVK---- 689

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
              G I  + +LT ++ L    +   +     
Sbjct: 690 ---GLIGGWTDLTERIRLLRDLHEAKEEADAA 718


>gi|94263810|ref|ZP_01287616.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455821|gb|EAT05988.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 970

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/514 (18%), Positives = 198/514 (38%), Gaps = 40/514 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATN 349
           +++  +         I   + + I  F  +  + + NR++ + +       I ++F+   
Sbjct: 349 AQKAELRKSEERYRHISEEMPLMICRFLPDYTISYVNRAYCDCFGKNQDELIGVSFMTLI 408

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           P +D        A      ++     ++  ++          WH    + L         
Sbjct: 409 PVSDH---DAVKATIGSLTVDAPVVSQDHRAI---MPDQTIVWHRWTDRALF------DE 456

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-------GPDGRIKLSNPA 462
            G I  ++++   +    +    ++   + I ++  G+ V+           R+  +NPA
Sbjct: 457 TGIIVAYQSIGEDITESRQAQQALRQAHDIISNMQIGIYVYHLEDIDDDRTLRMISANPA 516

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELL 521
              +   +   +   T   N  +       E +    FA +  S +    + +      +
Sbjct: 517 TEEITGVKVIDVVGKTLDENFPS-----LREMNLPQGFAEVARSGEARVYEDVVYDDNWV 571

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +       PLP     + F N+T+  +AE  L    +    A   K+ F+ ++++E R
Sbjct: 572 VRACFSVMAFPLPGNHVGIAFENITERKKAEEELRTAKQQADSATLAKSRFLANMNHEFR 631

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  +I  T L    +   LN +Q  Y+  +  +   LL ++NDILD + ++AG ++L+
Sbjct: 632 TPMNAVINLTRLALEEE--ELNPRQRDYLGKVLRAGEDLLVIINDILDFSKIEAGKLELD 689

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMD 700
                L  L+++V + ++   H+  I+ +V    +L    V D  RL Q+   +  N + 
Sbjct: 690 PVPFGLRGLIDDVVRPLSPNAHDKAIKFRVELAEELPERLVGDATRLRQVLFNLADNGIK 749

Query: 701 FSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
           F+ +G  +    +LK   D     F V ++G  I     + +   F         +  G 
Sbjct: 750 FTEQGEVLLKVQLLKRQGDQVTLAFMVSDSGIGISAAEQQRLGEPFSQADDSISRRYGGT 809

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL+I +  + L G  + + S     +     I
Sbjct: 810 GLGLAITKQLLVLMGSELEVESVPGEGSNFAFTI 843



 Score = 70.7 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 93/287 (32%), Gaps = 32/287 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +    A+   +  +L      ++ + + +  ++        I + N +Y    +  G   
Sbjct: 340 LRRTDADILAQKAELRKSEERYRHISEEMPLMICRFLPDYTISYVNRAY---CDCFGKNQ 396

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG--------------NNKSYKI 279
            + IG S            + ++         V + +H               +   +  
Sbjct: 397 DELIGVSFMTLIPVSDHDAVKATIGSLTVDAPVVSQDHRAIMPDQTIVWHRWTDRALFDE 456

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF-------DQNRYLQFHN 332
             ++ ++   G   D+++       L   ++I+ N+ + I ++       D+   +   N
Sbjct: 457 TGIIVAYQSIG--EDITESRQAQQALRQAHDIISNMQIGIYVYHLEDIDDDRTLRMISAN 514

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            +  E+  + +       + DE    LR  N LP+    +  +     VY+    + D W
Sbjct: 515 PATEEITGVKV-IDVVGKTLDENFPSLREMN-LPQGFA-EVARSGEARVYEDV-VYDDNW 570

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            +       V+    P       FEN+T +   E +  T  +     
Sbjct: 571 VVR--ACFSVMAFPLPGNHVGIAFENITERKKAEEELRTAKQQADSA 615


>gi|169334577|ref|ZP_02861770.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259294|gb|EDS73260.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM
           17244]
          Length = 928

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 120/650 (18%), Positives = 245/650 (37%), Gaps = 68/650 (10%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
               V   +  ++  L +  DQ   ++WAN  + KN       F+   G+    +K+  K
Sbjct: 19  GEKDVLSNIM-NISILNFKLDQNLTVIWANDDFYKNINYTKKEFESIFGDLYHYYKDYPK 77

Query: 250 KRMISSSALEKNFCETVSTLEHGNN--------KSYKIVRVLNSFGE----AGIAI--DV 295
              + S  L  N+ +  ++++            K ++I   +    E       A+  DV
Sbjct: 78  DFTVLSGNLLSNYEKGEASVQVTVRLPLKDKGFKWFRITATVTESEEHDVPIVYAVFSDV 137

Query: 296 SKEITV--------NDQLTHTYEILHNLTVAIAIFDQNRY-LQFHNRSFVELWEIDLAFL 346
           +  +           ++      ++      I I D + Y L + NR+  E  +   + +
Sbjct: 138 TDMVDKYKKTAKVCREKANSFEFMMEEYAGNIYISDMDNYELLYLNRTACETLKQPASSM 197

Query: 347 ATNPSNDELLEFLRS----ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
                 + +           N +     +  W E    V + +   K+      G+   +
Sbjct: 198 VGRKCYEVIQGRTSPCPFCTNDIINDKEFYEW-EFDNPVLERTFMIKNRIINWEGRRARL 256

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG--RIKLSN 460
            ++       ++  E    + D E +           +  L  G           I    
Sbjct: 257 ELS-----YDMYSTEYKLAKKDKEREV---------ILRTLPGGFVRLDARDYETILWYG 302

Query: 461 PAFRSLWKTEENRLS----------PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             F +L    E                   + I         E++G  +    I   D  
Sbjct: 303 ADFLNLIGYSEEEFETKLKSKCGYVHPDDYKKIIPVLDEL-KETNGSTVTEIRIIRSDGS 361

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            K+L  TL  +S+    +  IP   +  M       +  R   AL +  +  + A+E K 
Sbjct: 362 IKNLTMTLCYVSEKD-SWDGIPSFYSLGMDVTEERMEQERQRIALEDAYQTAKVANEAKT 420

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+  +S+++R+P+  I+G   + K +   +   K    +  I+ SS  LL+L+N++LD+
Sbjct: 421 NFLSSMSHDIRTPMNAIMGMAAIAKMN--TNEPDKVRDCLNKINISSKHLLSLINEVLDM 478

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQ 689
           + +++G + L    I L++L+  V       + E N ++K+     +    +AD  RL Q
Sbjct: 479 SKIESGKINLMLEKIDLSELVENVADICKPLVAEKNQQLKMSVGRVRHEKVIADGDRLQQ 538

Query: 690 IFSKILSNAMDFSSKGSTVI-----LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           +   ++SNA+ ++ +G T+      L +A DN G + F   +NG  + ED    +F  F 
Sbjct: 539 VLLNLMSNAIKYTPEGGTITFRINELSSAIDNLGQYEFIFIDNGIGMAEDFIPHIFEPFS 598

Query: 744 SNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   + +G GLG++I ++ + +  G + + S+    +     +P +
Sbjct: 599 RAEDSRISKIQGTGLGMAITDNIVRMMNGIIEVQSTLGVGSKFVVSVPME 648


>gi|163848362|ref|YP_001636406.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526284|ref|YP_002570755.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669651|gb|ABY36017.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450163|gb|ACM54429.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 957

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 156/379 (41%), Gaps = 19/379 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
               L  +    +      ++  ++G+ +     R+ + N      +   E+ L  G   
Sbjct: 337 EHSRLFERLRAELDHAQAVVETTNDGIVLINARRRVVMVNRRACYFFGVAEHDLK-GRPY 395

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            ++    +R +       L+   +   + +R + +  +       L+    P+ + +   
Sbjct: 396 DDLLQVFNRVFAHPARLGLWLGQLLGSETDRANEEFQVVWPQVRRLQCFSAPVVDRR--- 452

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL------ 594
                 +       +       R+ +++KN FV  VS+ELR+PL +  G   LL      
Sbjct: 453 ------EQYLGRILIFRDVTREREVEQMKNEFVSMVSHELRTPLASTQGALQLLLGDSER 506

Query: 595 -KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            K+  +  ++S +   ++    ++  LL LVND+LD+A ++ G ++L    +   ++   
Sbjct: 507 GKSGLIRDMSSVERDLLQRALTNTNRLLRLVNDVLDIAKIERGQLQLQRHPVAPEEICRN 566

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               +A+   +  + I +     L     DR R++Q+   +LSNA+ FS  G  V++  A
Sbjct: 567 AIDDLASFARQQQVTISLDVPPNLPLVDVDRDRIVQVLVNLLSNAIKFSPAGQQVVVSVA 626

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGH 771
            + G   FSV++ G  I       +F +F          R G GLGL+I    + LHGG 
Sbjct: 627 HEQGMVRFSVRDWGPGISRADQLKLFQKFQQLDQSKSNVRGGSGLGLAISRQLVELHGGR 686

Query: 772 VSISSSDEGVTTINCRIPS 790
           + + S     +T +  +P 
Sbjct: 687 IWVDSDVGFGSTFSFTVPL 705



 Score = 39.5 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 18/191 (9%)

Query: 255 SSALEKNFCETVSTLEHG--NNKSYKIVRVLNSFGEAGIAIDVSKE-ITVNDQLTHTYEI 311
           +   +    + V    +G    +   +  ++    + G+AI+ S+    +  +L H   +
Sbjct: 299 AGGWQAGVVQLVPWPGNGFSERQWQWLRSLVR---QIGVAIEHSRLFERLRAELDHAQAV 355

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           +      I + +  R +   NR     + +    L   P +D L  F R     P +L  
Sbjct: 356 VETTNDGIVLINARRRVVMVNRRACYFFGVAEHDLKGRPYDDLLQVFNRVF-AHPARLGL 414

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVD 424
              +       +++E  +  W     Q   +   S P         G I +F ++T + +
Sbjct: 415 WLGQLLGSETDRANEEFQVVWP----QVRRLQCFSAPVVDRREQYLGRILIFRDVTRERE 470

Query: 425 LETKYNTLVKV 435
           +E   N  V +
Sbjct: 471 VEQMKNEFVSM 481


>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 885

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 175/410 (42%), Gaps = 31/410 (7%)

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +   L V    +P    +  F +            + +++    +D+  E V      GR
Sbjct: 73  DSDRLWVYTLEHPSVDGVLRFSS-----------RSEMQLLQVLLDNTLEYVFFRDLQGR 121

Query: 456 IKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             L+N AF               G  + +  ++ +  +       + +A + S ++    
Sbjct: 122 FILTNRAFDVAVSTGMGRPESPVGQRLDDFISSETASWIHDIDQRVLSAGVPSVNN---V 178

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEI 568
                   +   L+ S +P+ + Q ++        +++D  R E  L    +  + A+  
Sbjct: 179 AHFVFNNGTRHWLQMSTVPVRSGQGLVVGSVSVARDISDLKRTESELMTAMKEAQAANRA 238

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+E+R+P+  +IG ++L + ++   L+++Q  Y++ +      LL+LVND+L
Sbjct: 239 KGEFLAAMSHEIRTPINGVIGASELCQETE---LDAEQRAYLDTVIQCGNTLLSLVNDVL 295

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + ++AG + L         +L EV +  A  + +  I + +  D ++    + D  RL
Sbjct: 296 DFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDRMPKYVIGDPTRL 355

Query: 688 LQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QIF  +L NA+ F+  G  V    I++ +       F V++ G  I E   +++F+ F 
Sbjct: 356 KQIFYNLLGNAVKFTEAGEIVLSAHIVERSAQLAVIRFKVRDTGIGISETRREAIFSSFT 415

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  RR  G GLGL+I +    L  G +S+ S     +T    +P +
Sbjct: 416 QEDMSTTRRYGGTGLGLAICKELTELMAGSLSVDSRVGEGSTFTLEVPFE 465



 Score = 44.5 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 15/136 (11%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
            + + + +VL D+    V+ RD  G  +  N ++     T     +  +G+    F    
Sbjct: 96  RSEMQLLQVLLDNTLEYVFFRDLQGRFILTNRAFDVAVSTGMGRPESPVGQRLDDFISS- 154

Query: 249 KKRMISSSALEKNFCETVSTL--------EHGNNKSYKIVRVLNS------FGEAGIAID 294
           +         ++     V ++         +G     ++  V          G   +A D
Sbjct: 155 ETASWIHDIDQRVLSAGVPSVNNVAHFVFNNGTRHWLQMSTVPVRSGQGLVVGSVSVARD 214

Query: 295 VSKEITVNDQLTHTYE 310
           +S       +L    +
Sbjct: 215 ISDLKRTESELMTAMK 230


>gi|291484739|dbj|BAI85814.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 589

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I+T +  G     F  +  Q++      N   +     +  +++GV     DG I ++NP
Sbjct: 221 ILTQDEIGELATAFNQMGRQLNFHINALNQEKEQLSNILSSMADGVITINIDGTILVTNP 280

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +      +      +            +  +LF   +++  ++ + ++ TL+  
Sbjct: 281 PAERFLQAWYYEQNMNIKEGDNLP--------PEAKELFQNAVST--EKEQMIEMTLQGR 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S  +L   + PL     +   V V   +  ER L          D+++  F+ +VS+ELR
Sbjct: 331 SWVLL---MSPLYAESHVRGAVAVLRDMTEERRL----------DKLREDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+++ +    + S    + +  + I   S  +  LVND+LDLA +++G   L+
Sbjct: 378 TPISMLQGYSEAIVDD-IASSEEDRKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLH 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y  I +N+ L ++ +  +    E NI ++         F+ D  ++ Q+F+ ++ NA+  
Sbjct: 437 YEKINVNEFLEKIIRKFSGVAKEKNIALQNDISLTEEEFMLDEDKMEQVFTNLIDNALRH 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +S G +V +            +K++GS IPE+    +F RF        R   G GLGL+
Sbjct: 497 TSSGGSVSISVHSVKDGLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV++ +  H G +++ S  +  TT    IP+K
Sbjct: 557 IVKNIVEAHNGSITVHSRIDKGTTFTFYIPTK 588


>gi|289678178|ref|ZP_06499068.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 425

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/420 (23%), Positives = 174/420 (41%), Gaps = 47/420 (11%)

Query: 411 GTIWMFENLTVQVDLET-------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           G + +  + T +   E        +           I+   + + +  P G I   N   
Sbjct: 2   GYLLIGTDNTARKQEEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQM 61

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGT 517
            +L     + L        I A C  ++ +    D      L    ++ ++   ++  GT
Sbjct: 62  MALTGRTRDEL--------IGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGT 113

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             ++S +   +               +VT+  R ER L EKN  L  A  +K+ F+  +S
Sbjct: 114 ETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMS 173

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  +IGF++ L+   +G +   Q +Y+  I  S   LL+L+NDILDL+ V+AG+
Sbjct: 174 HELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGM 233

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           M L   ++ L++LL+     +  +    +I++K+ ++ + G    DR++  QI   +L+N
Sbjct: 234 MTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLAN 293

Query: 698 AMDFSSKGSTVILKAARD------------------------NGDFIFSVKNNGSSIPED 733
           A+ FS  G  V L                                   SV + G  I + 
Sbjct: 294 AVKFSEPGGWVTLAVRLVPASQAGLIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQS 353

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F         +  G GLGL++V+    LHGG V+++S  +        +P +
Sbjct: 354 DMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 413


>gi|187778877|ref|ZP_02995350.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
 gi|187772502|gb|EDU36304.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
          Length = 569

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 166/396 (41%), Gaps = 37/396 (9%)

Query: 401 HVIVTSNPRGGTIWM----FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VI+ S    G + +      ++     +E +           +  +  GV     + ++
Sbjct: 202 RVIINSEDEIGRLGITFNAMADILENSLVEVRDKQ--NRLEAILKSMDSGVVAIDKEFKV 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP    L+  + + +  G ++ +            D    +  I   + ++R     
Sbjct: 260 IMINPYANKLFGIKRDII--GENLMDNIRDFELERVLKDKEPGYKEINILWPEKRTLRIK 317

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +++S            N  T+    ++TD  + E               ++  FV +V
Sbjct: 318 TTDIISK---------YDNIGTVAVVQDITDIKKLE--------------NMREQFVANV 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF++ LK          + ++++ I+  +  L  L+NDIL L+ ++  
Sbjct: 355 SHELKTPLTSIKGFSETLK---YVEDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQ 411

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L    I LN+L+ +V   +     + NI+I ++  GK+   + ++ +  Q+   ++ 
Sbjct: 412 KQELIKEEIDLNELIEKVYCLVKKSAEDKNIKINIVG-GKVPLLIGNKDKYNQMIINLID 470

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ ++     V +   +D  + IF V++ G  I ++    +F RF        R   G 
Sbjct: 471 NAIKYTEPNGEVNIGTRQDKDNIIFWVEDTGVGISKEHLDRIFERFYRVDKARSRAEGGT 530

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    G + + S  +  T    +IP 
Sbjct: 531 GLGLAIVKHIVLGINGKIEVKSEPKKGTKFIVKIPL 566



 Score = 46.5 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 28/193 (14%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSK--EI 299
           LF   I   MI      +     ++  +            +   G    A+ D+ +   +
Sbjct: 171 LFSSRISMAMIKPIKNLEFVTARIARGDFDRRVIINSEDEIGRLGITFNAMADILENSLV 230

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V D+      IL ++   +   D+   +   N    +L+ I    +      + L++ +
Sbjct: 231 EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPYANKLFGIKRDIIG-----ENLMDNI 285

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHL-PNGQTLHV----IVTSNPRGGTI 413
           R                 +  V K  E  +K+   L P  +TL +    I++     GT+
Sbjct: 286 RDF--------------ELERVLKDKEPGYKEINILWPEKRTLRIKTTDIISKYDNIGTV 331

Query: 414 WMFENLTVQVDLE 426
            + +++T    LE
Sbjct: 332 AVVQDITDIKKLE 344


>gi|39995824|ref|NP_951775.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982588|gb|AAR34048.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298504836|gb|ADI83559.1| sensor histidine kinase response receiver, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 589

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 149/395 (37%), Gaps = 38/395 (9%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
              D+  +    ++           G A     G I  +N     +          G   
Sbjct: 38  ELRDIRAQLELSLERYANLYHFAPVGYATIDAVGVIADANRTLAGMI---------GADC 88

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL----EYSIIPL--P 534
           R +       +   D    F + +     +R+ + G   L   + +    + S +PL  P
Sbjct: 89  REMVGLLFSDFVHKDDVTSFVSHLARCTGQREGVTGEFRLSGRNGISVDVQLSSMPLTPP 148

Query: 535 NAQTMLT--FVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLT 585
             +        ++T   R ER L E  E L  A          K+ F+ ++S+E+R+P+ 
Sbjct: 149 GGRVSCRTAITDITMIKRKERELNESREELCWAKEAAEDASRAKSEFLANMSHEIRTPIN 208

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G   L+  ++LG    +Q   +E    S+  LL LVNDILD + ++A  M       
Sbjct: 209 GVLGMLQLVLDTELGD---EQRHCLEMAKRSADALLRLVNDILDFSRIEARKMVFESRPF 265

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L   +N   + +A +     + + V     +  + V D  RL Q+   ++ NA+ F+ +
Sbjct: 266 DLTACVNSAVEILAFEARRKGLAVMVRMGPDVPAAVVGDEARLRQVLVNLIGNAVKFTDR 325

Query: 705 GSTVILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVG 755
           G  V + AAR              SV++ G  I     + +F  F         +  G G
Sbjct: 326 G-KVEVTAARAERQSDPLRTAIRISVRDTGIGIAPQERERLFRVFSQVDGACNRRFGGTG 384

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL++    +   GG + + S     +T    IP 
Sbjct: 385 LGLALTRDIVEAMGGAIDVESQSGQGSTFTITIPL 419


>gi|254519261|ref|ZP_05131317.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
 gi|226913010|gb|EEH98211.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
          Length = 568

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/403 (21%), Positives = 173/403 (42%), Gaps = 41/403 (10%)

Query: 394 LPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ---GETIDHLSEGVA 448
           + NG  +  V + +N   G++   F N+  Q  L+++ +  +  Q      ++ +  GV 
Sbjct: 188 IANGDYSRRVSIYTNDEIGSLANTFNNMADQ--LQSRISDSLDKQNKLEAILESMESGVI 245

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                 ++ L NP  ++L+  +E+          I    S Y  + D       I     
Sbjct: 246 AVDNKQKVMLINPYAKNLFGIKEDI---------IGENISEYIIDYDILSFMRNIPAIEM 296

Query: 509 DERKSLQ---GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            E K +      L +    ++    IP+     ++T +++TD  R E             
Sbjct: 297 KEIKLIHPILRELRIKKAPIINDKKIPI---GVVITVLDITDIKRLE------------- 340

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             I++ FV +VS+EL++PLT+I GF + LK          ++++++ I   +  L NL+N
Sbjct: 341 -NIRSQFVANVSHELKTPLTSIKGFAETLK---FVEDLPTRNKFLDIIDKEAERLTNLIN 396

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DIL L+ ++    K+         ++ +V   +  +M+   I I   S+G       DR 
Sbjct: 397 DILILSNIENNH-KMKEEEFNPAKVIEDVINMVTPQMNSKQIEINFSSNGT-NELNGDRD 454

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           +  Q+   ++ NA+ +S+  + + ++    N      V++NG  IP++    +F RF   
Sbjct: 455 KFFQMILNLVENAIKYSNDKTLISIRTYDINDYTYIEVEDNGIGIPKEDLPRIFERFYRV 514

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                + G GLGL+IV+    +  G + + S+    T    ++
Sbjct: 515 DKSRAKGGTGLGLAIVKHIARMFNGEIFVKSTLNKGTKFTIKL 557


>gi|218129844|ref|ZP_03458648.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
 gi|217987954|gb|EEC54279.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
          Length = 629

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 112/533 (21%), Positives = 217/533 (40%), Gaps = 30/533 (5%)

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
            GN+K Y I  V +    +      S    +  +    + I  NL V I +++    L  
Sbjct: 105 KGNSKVYGIAEVQDGPYMS------SASQLLQQRELLLHNIYKNLPVGIELYNMQGVLTD 158

Query: 331 HNRSFVELWEID--LAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKE-NIFSVYKSSE 386
            N   +E++ +      L  N  ++ +  + ++   +  E  ++    + +    Y +S+
Sbjct: 159 LNDKELEMFHLQQKEDLLGINIFDNPIFPDEMKEKLRKFEDADFTFRYDFSKIGNYYNSQ 218

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
               T  L    T        P    + +  + T       K            ++   G
Sbjct: 219 KKTGTMELVTKVTTLYDEHHTPINY-LLINADKTEATIAYNKIQEFESFFKLIGNYAKVG 277

Query: 447 VAVFGP-----DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            A +       D +       + ++ + EE  LS    + N      R+Y      +   
Sbjct: 278 YAHYNLLTQKGDAQHSW----YINIGEKEETPLSDIIGVYNHIHPDDRHYMLDFLNNARK 333

Query: 502 AIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEK 558
                F+ E + L+  G+      ++L     P  N+ + +    ++T     E  L + 
Sbjct: 334 GTENKFNKEVRVLRENGSCSWTHVNLLVKVYAPEQNSIELICINYDITRLKETEAMLIQA 393

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   ++D +K++F+ ++S+E+R+PL  IIGF+ LL          ++  Y+  I+ ++ 
Sbjct: 394 KEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLL---PYMEDAKEREYYISLINHNNK 450

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LLN++N++LDL+ ++AG M+L      L++L++E      + + E  + +K        
Sbjct: 451 LLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVPE-GVTLKKRYPASPF 509

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  R+ QI S +LSNA+  +++G  V +    +      SV + G  IP++    +
Sbjct: 510 LIEQDSMRIKQILSNLLSNALKNTTQG-YVEVSYETEQSGVKISVTDTGRGIPQEKLGVI 568

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF       Q  G GLGLSI +S I    G + ++S     +T     P +
Sbjct: 569 FERFEKVDSYIQ--GAGLGLSICKSIIEQMNGTIEVASVLGEGSTFTVTFPCR 619


>gi|29346674|ref|NP_810177.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568722|ref|ZP_04846133.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338571|gb|AAO76371.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842795|gb|EES70875.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 1039

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 140/246 (56%), Gaps = 6/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  + E  L        +++ +K++F+ ++S+E+R+PL  I+GF+ +L +++       +
Sbjct: 657 ERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE---K 713

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +YV  I  ++T+LL L++DILDL+ ++AG + L+YS + +NDL+ +++     K+  + 
Sbjct: 714 QEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKSDA 773

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++++ ++  +      ++ RL Q+   +++NA+ F+ +GS +     R N +  F V + 
Sbjct: 774 VKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQGS-IRFGYKRQNNELYFYVADT 832

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T   
Sbjct: 833 GCGIPQDKQKSIFGRFVKLNSFAQ--GTGLGLSICQTLVEHMGGKIGVESEEGNGSTFWF 890

Query: 787 RIPSKE 792
            +P K+
Sbjct: 891 TLPYKQ 896


>gi|90421839|ref|YP_530209.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90103853|gb|ABD85890.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 757

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 150/367 (40%), Gaps = 16/367 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +            +  S+ + +   +GRI   N A+  L       L       ++    
Sbjct: 102 ELQEAEYRARSLFESQSDLIVLRDAEGRIGFVNDAYCELAGRASAALIGSPDTLDVLEQ- 160

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           S    E +G   +   + +    R      +      V   S  P   A+T     +VT 
Sbjct: 161 SEVITEPNGTRTYDQKVATAHGPR-----WIAWREGIVRNDSGRP---AETQCVGRDVTA 212

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               ERAL E  +    A+  K+ F+   S+E+R+PL  IIG + LL  +    L  +Q+
Sbjct: 213 RAETERALAEARDIADTANRAKSRFLAMASHEIRTPLNGIIGMSGLLLDTH---LTPEQA 269

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   +  S   L +L+ ++LD + ++AG + L      L+ L+ ++ + +A +    ++
Sbjct: 270 TYARAVKTSGDALASLIEELLDYSKIEAGKIDLENRPFALSALIEDITELLAPRAQARHL 329

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725
            I    D +L    + D  RL Q+   +  NA+ F++ G   +I++     G+  F V++
Sbjct: 330 EIAADVDERLPAEVIGDAARLRQVLLNLAGNAIKFTATGGVALIVEPGAMPGEIRFMVRD 389

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F  F            G GLGLSI +  +   GG +++ S+    +T
Sbjct: 390 TGIGIAPEAQARIFREFEQADELIARNYGGTGLGLSISDRIVKRMGGQITLHSAQGTGST 449

Query: 784 INCRIPS 790
               +P 
Sbjct: 450 FEFVVPL 456



 Score = 41.1 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 96/334 (28%), Gaps = 38/334 (11%)

Query: 137 EGQSFDLVAETQNDCAIKI--EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
              +F         C +      ++  +   LR+L+L            +  +L      
Sbjct: 55  HAVAFAGSLLVGLGCVLFAIPSIKLRAARHELRLLALHNDA-----LADRNWELQEAEYR 109

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
            + LF+S   L+  RD  G I + N +Y +           A+  S        +  +I+
Sbjct: 110 ARSLFESQSDLIVLRDAEGRIGFVNDAYCELAGRASA----ALIGSPDTLDVLEQSEVIT 165

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG----EAGIAIDVSKEITVNDQLTHTYE 310
                + + + V+T       +++   V N  G       +  DV+        L    +
Sbjct: 166 EPNGTRTYDQKVATAHGPRWIAWREGIVRNDSGRPAETQCVGRDVTARAETERALAEARD 225

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL--EFLRSANKLPEQ 368
           I                    NR+      +    + T P N  +     L   +  PEQ
Sbjct: 226 IADT----------------ANRAKSRFLAMASHEIRT-PLNGIIGMSGLLLDTHLTPEQ 268

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
             +    +       S       +       + +          I   E++T  +    +
Sbjct: 269 ATYARAVKTSGDALASLIEELLDYSKIEAGKIDLENRPFALSALI---EDITELLAPRAQ 325

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              L ++  +  + L   V       R  L N A
Sbjct: 326 ARHL-EIAADVDERLPAEVIGDAARLRQVLLNLA 358


>gi|308069542|ref|YP_003871147.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858821|gb|ADM70609.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 480

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 172/396 (43%), Gaps = 30/396 (7%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           +VTS+  G     F +++ +++   +  N         +  +S+ V  F   G+I L+NP
Sbjct: 97  LVTSDEIGELAKTFNHMSTELEATIRSLNEEKNHLSSVLRSMSDAVITFDRSGQIILTNP 156

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +SL    +                   + E D  +  A++         SL  T+   
Sbjct: 157 PAQSLLDIWKKL----------------EWQERDLEEFGASVPEPLL----SLFHTVMDR 196

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + V +Y  +   +    +  +   +++R   A+        K +++++ FV +VS+E+R
Sbjct: 197 GEDVGDYIHVKKGSWSVQMAPLYTDNAIRGAVAVLRDITEEVKLEKMRSDFVANVSHEIR 256

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL+ + G+++ L     GS   +  + V+ I   S  +  LV D+LDLA ++AG   ++
Sbjct: 257 TPLSMMQGYSEALLDGMAGS-PEESEELVQVIHDESLRMGRLVKDLLDLARMEAGHTDMH 315

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMD 700
              + +N+L+  V +    +  E  + +     G+ L    AD  RL Q+ + +L NA  
Sbjct: 316 RQEVDVNELIERVHRKFTVRSKEQGLTLDYHEQGQRLLLPEADEDRLEQVLTNLLDNAFR 375

Query: 701 FSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---G 753
            +  G  V + A R  G+        +K+ G  I  +    +F+RF        R    G
Sbjct: 376 HTPGGKKVTIAADRILGERHELIRIRIKDEGVGIASEDLPYIFDRFYKADKARVRGEDKG 435

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+IV++ +  HGG VS +S     T     +P
Sbjct: 436 TGLGLAIVKNIVEAHGGSVSAASVLGEGTEFTILLP 471



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 107/308 (34%), Gaps = 41/308 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            ++N++  H   +L +++ A+  FD++  +   N     L +I   +        +L EF
Sbjct: 122 RSLNEEKNHLSSVLRSMSDAVITFDRSGQIILTNPPAQSLLDI---WKKLEWQERDLEEF 178

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPRGGTIWM 415
             S   +PE L          +V    E   D  H+  G     +  + T N   G + +
Sbjct: 179 GAS---VPEPL-----LSLFHTVMDRGEDVGDYIHVKKGSWSVQMAPLYTDNAIRGAVAV 230

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVA------------VFGP 452
             ++T +V LE            +  T + +     + L +G+A            +   
Sbjct: 231 LRDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAGSPEESEELVQVIHDE 290

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
             R+         L + E           ++     R + +         +   + ++ +
Sbjct: 291 SLRMGRLVKDLLDLARMEAGHTDMHRQEVDVNELIERVHRKFTVRSKEQGLTLDYHEQGQ 350

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            L   L    +  LE  +  L +     T      ++ A+R L E++E +R    IK+  
Sbjct: 351 RL--LLPEADEDRLEQVLTNLLDNAFRHTPGGKKVTIAADRILGERHELIRI--RIKDEG 406

Query: 573 VQHVSYEL 580
           V   S +L
Sbjct: 407 VGIASEDL 414


>gi|298387248|ref|ZP_06996801.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259917|gb|EFI02788.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 1039

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 140/246 (56%), Gaps = 6/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  + E  L        +++ +K++F+ ++S+E+R+PL  I+GF+ +L +++       +
Sbjct: 657 ERKKMEMELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE---K 713

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +YV  I  ++T+LL L++DILDL+ ++AG + L+YS + +NDL+ +++     K+  + 
Sbjct: 714 QEYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKSDA 773

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++++ ++  +      ++ RL Q+   +++NA+ F+ +GS +     R N +  F V + 
Sbjct: 774 VKLEFVAPEEPCFAHIEKNRLSQLIINLVTNAIKFTIQGS-IRFGYKRQNNELYFYVADT 832

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  IP+D  KS+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T   
Sbjct: 833 GCGIPQDKQKSIFGRFVKLNSFAQ--GTGLGLSICQTLVEHMGGKIGVESEEGNGSTFWF 890

Query: 787 RIPSKE 792
            +P K+
Sbjct: 891 TLPYKQ 896


>gi|220906024|ref|YP_002481335.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219862635|gb|ACL42974.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 816

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 152/370 (41%), Gaps = 12/370 (3%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
                           +  ++E + VF    R+    P            L        +
Sbjct: 449 QRTAALRQAEAELRGILAAMTELILVFDTQERLLKIVPTSTDQENQPPASL--------L 500

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQTMLT 541
                          + A++  +   E+        ++ D  + YS  I P+     +  
Sbjct: 501 YQPLPTVLPSPQVEAIRASMRQAIALEQTCTVDYSLVVGDREVWYSACISPINGDSVIFV 560

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T+  RAE  L    E  ++ +E+K+ FV   S+E R+PLT I+  T+LL++     
Sbjct: 561 ARDITEQHRAEEELARTLEKEKQLNELKSRFVSMTSHEFRTPLTTILSSTELLQSHSHKW 620

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +  +++E I  +   +  L+N +L L+  +AG ++ +  ++ L     ++ + + + 
Sbjct: 621 GEPRDLKHLERIHTAVERMTELLNGVLVLSKAEAGRLEFHPQSLNLEQFCRDLVEDLQSS 680

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E+ +   +   G       D + L  I   +LSNA+ +S +G +V  +    +    F
Sbjct: 681 APEHQLLFSLT--GNCTQVEMDEKLLQHILPNLLSNAIKYSPRGGSVRFEVTCTSTSVCF 738

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +++ G  IP      +F  F    + G   G GLGL+IV+  ++LHGG +S++S     
Sbjct: 739 QIQDQGIGIPAADLPHLFESFHRAKNVGNISGTGLGLAIVKKSVDLHGGTISVTSEVGIG 798

Query: 782 TTINCRIPSK 791
           TT    +P +
Sbjct: 799 TTFIVILPLQ 808



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 86/292 (29%), Gaps = 42/292 (14%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ--------FHNRSFVELWEIDLAFL 346
             +   +         IL  +T  I +FD    L           N+    L    L  +
Sbjct: 448 TQRTAALRQAEAELRGILAAMTELILVFDTQERLLKIVPTSTDQENQPPASLLYQPLPTV 507

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
             +P  + +   +R A  L +              Y      ++ W+          ++ 
Sbjct: 508 LPSPQVEAIRASMRQAIALEQTCTVD---------YSLVVGDREVWYSA-------CISP 551

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 I++  ++T Q   E +    ++ + + ++ L            + +++  FR+ 
Sbjct: 552 INGDSVIFVARDITEQHRAEEELARTLEKEKQ-LNEL--------KSRFVSMTSHEFRT- 601

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDS 524
                  L+       +  + S  + E         I T+ +   + L G L L      
Sbjct: 602 ------PLTTILSSTELLQSHSHKWGEPRDLKHLERIHTAVERMTELLNGVLVLSKAEAG 655

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            LE+    L   Q     V    S   E  L           E+    +QH+
Sbjct: 656 RLEFHPQSLNLEQFCRDLVEDLQSSAPEHQLLFSLTGNCTQVEMDEKLLQHI 707


>gi|332637970|ref|ZP_08416833.1| histidine protein kinase; sensor protein [Weissella cibaria KACC
           11862]
          Length = 629

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 168/399 (42%), Gaps = 30/399 (7%)

Query: 402 VIVTSNPRGGTIWMFEN-LTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLS 459
           ++V SN   G +    N L V+++  T      + +    ++H+++GV      G I + 
Sbjct: 236 ILVRSNDEIGQLAENVNALAVRIEETTNSTEFERRRLDSVLEHMTDGVIATDRRGSINII 295

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N A   +   +++ ++ G  I  +     RY       +    ++    DER+ +     
Sbjct: 296 NTAALQMTGIDDSTVAMGQSILEVLQISDRYNLRELLDNQEELLLDFSTDERQLIIRAY- 354

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                   +S+I   +       + + D    +R            +  +  FV +VS+E
Sbjct: 355 --------FSLIQRASGFISGLVIVLHDVTEQQR-----------IELERRQFVSNVSHE 395

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT++  + D L+   +         ++      +T +++++ND+L+L+ +D+G MK
Sbjct: 396 LRTPLTSVKSYVDALQEGAIDD-PEVARNFLAVAQDETTRMIHMINDLLELSRMDSGTMK 454

Query: 640 LNYSTIVLNDLLNEVKQSIATKMH-----ENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           L    + + +L N +       +      E    IK            D  +  Q+   I
Sbjct: 455 LETEYVNVGELFNYILNRFDMIIANDDKPEKYYTIKREIPKVQIWVELDTSKFTQVIDNI 514

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752
           ++NA+ +S  G  V  +   +  + + S+ + G  IP+     +F+RF  V  A    + 
Sbjct: 515 MNNAIKYSPDGGVVTARMIDNQKEVVLSITDQGLGIPKKDLGHIFDRFFRVDKARSRAQG 574

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  I   GG + + S++   +T +  +P +
Sbjct: 575 GTGLGLAISKEIIERFGGRIWVESAEGQGSTFSISLPYE 613



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 75/202 (37%), Gaps = 25/202 (12%)

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAG-----IAIDVSKEITVND-QLTHTYEILHNLTV 317
           +  + +  G+     +VR  +  G+       +A+ + +     + +      +L ++T 
Sbjct: 222 DRTTRIAQGDYSGGILVRSNDEIGQLAENVNALAVRIEETTNSTEFERRRLDSVLEHMTD 281

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            +   D+   +   N + +++  ID + +A   S  E+L+ +     L E L+ +     
Sbjct: 282 GVIATDRRGSINIINTAALQMTGIDDSTVAMGQSILEVLQ-ISDRYNLRELLDNQEELLL 340

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ--VDLETK------- 428
            FS  +     +  + L       +   S    G + +  ++T Q  ++LE +       
Sbjct: 341 DFSTDERQLIIRAYFSL-------IQRASGFISGLVIVLHDVTEQQRIELERRQFVSNVS 393

Query: 429 --YNTLVKVQGETIDHLSEGVA 448
               T +      +D L EG  
Sbjct: 394 HELRTPLTSVKSYVDALQEGAI 415


>gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 444

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 158/382 (41%), Gaps = 25/382 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  +  ++       T  K      +D +++GV     + R+ L NP     + 
Sbjct: 87  GKLAQSFNQMAQRLRGTLSLVTDEKNRMQAILDSMADGVIAVDRETRVILINPVVEEAFG 146

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E          ++  T      + +   LF   + S    ++ L+  +      +   
Sbjct: 147 LNEE--------ASLGRTVLEVVRDYELDRLFRQALDSGRPLKQELR--ILTPEPRIFRV 196

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + PL   Q  +             AL       R+ ++++  FV + S+ELR+PLT+I 
Sbjct: 197 HLTPLRGPQGGVV------------ALFRDITERRQLEQMRTEFVANASHELRTPLTSIR 244

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF + L+   + +      +++  I   +  L  LV+D+L LAT++          + L 
Sbjct: 245 GFIEALRDGAI-NEPETARRFLGIIEEETDRLTELVDDLLKLATIEERRNMFGRLPVELP 303

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++     + A++  +  + ++V     L   + D++ L Q+F  +L NA+ F+ KG  +
Sbjct: 304 GVVQRAVDTFASRARQKGVALRVELADGLPPVIGDQKLLTQMFINLLDNAVKFTEKGE-I 362

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            ++AA   G     V + G+ I  +    +F RF        + G GLGL+IV+  +  H
Sbjct: 363 TIRAAAAEGGVEVEVLDTGAGIAPEHLPRIFERFFRGDKARTQGGTGLGLAIVKHIVEGH 422

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + + S     TT +  +P+
Sbjct: 423 GGRIRVMSKPGKGTTFSMFLPA 444



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 29/163 (17%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           V D+      IL ++   +   D+   +   N    E + ++          + + ++  
Sbjct: 107 VTDEKNRMQAILDSMADGVIAVDRETRVILINPVVEEAFGLNEEASLGRTVLEVVRDYEL 166

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSN--PRGGTIWMF 416
                                  S    K    +  P  +   V +T    P+GG + +F
Sbjct: 167 DRL--------------FRQALDSGRPLKQELRILTPEPRIFRVHLTPLRGPQGGVVALF 212

Query: 417 ENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVA 448
            ++T +  LE            +  T +      I+ L +G  
Sbjct: 213 RDITERRQLEQMRTEFVANASHELRTPLTSIRGFIEALRDGAI 255


>gi|162455108|ref|YP_001617475.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161165690|emb|CAN96995.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 714

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/447 (21%), Positives = 180/447 (40%), Gaps = 22/447 (4%)

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           +E+L  +R+   L E       KE      +    H++       +T  +  ++      
Sbjct: 119 EEVLARIRTHLSLRE-----AQKELEAKNAQLLRAHQELEQRVRERTAELASSNAALEA- 172

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
               EN   +   E        +    ID+ +  + V   +GR  + N  +  L+     
Sbjct: 173 ----EN-ADRRRAELALRESQHLLQAIIDNSTAVIFVKDLEGRYLMINRRYEELFHVTAQ 227

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            ++  T      A C+      D   + A      ++      G    ++     +    
Sbjct: 228 WIAGKTDYDLFPAECADALRAFDRRAVAAGGPLEIEESVPQGDGLHTYIAIKCPLFDESG 287

Query: 533 LPNA-QTMLTFVNVTDSVRAERALTEKNEALRKAD-----EIKNSFVQHVSYELRSPLTN 586
              A   + T ++      AER +    E   +A+      +K+ F+  +S+ELR+PLT 
Sbjct: 288 RAYAVCGISTDISDRKRTEAEREMLLCREQAARAELERTGRLKDEFLALLSHELRTPLTA 347

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G++ LL+    G  +    + +  I  ++     LV+D+LD++ +  G + L+   + 
Sbjct: 348 ILGWSQLLRLR--GPSDEILGRALGTIERNARAQSKLVDDLLDMSRIIGGRLSLDVEVVD 405

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L ++L  + +S         IR+++  +      + D  RL QI   ++SNAM F+ +G 
Sbjct: 406 LTEMLETLLESAEPAAKAKGIRLELSVESAGEQVMGDPNRLQQIVWNLVSNAMKFTRQGG 465

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            V +   R+      +V + G  I  +    VF +F        R   G+GLGLSIV+  
Sbjct: 466 QVKVSLRREGTYARLAVSDTGIGIAPEFLPYVFEQFRQADASTTREYGGLGLGLSIVQHL 525

Query: 765 INLHGGHVSISSSD-EGVTTINCRIPS 790
           + LHGG V  SS+  +   +   ++P 
Sbjct: 526 VELHGGTVEASSAGKDQGASFTVKLPL 552



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 100/326 (30%), Gaps = 26/326 (7%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
           +AG + +    ++       I    ++ E++K  + +  + + +   LE+   E  + L 
Sbjct: 105 EAGGVDYITKPFEIEEVLARIRTHLSLREAQKELEAKNAQLLRAHQELEQRVRERTAELA 164

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
                        N+  EA  A     E+ + +       I+ N T  I + D       
Sbjct: 165 S-----------SNAALEAENADRRRAELALRESQHLLQAIIDNSTAVIFVKDLEGRYLM 213

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            NR + EL+ +   ++A     D        A +     + +          + S    D
Sbjct: 214 INRRYEELFHVTAQWIAGKTDYDLFPAECADALR---AFDRRAVAAGGPLEIEESVPQGD 270

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL------- 443
             H        +   S        +  +++ +   E +   L+  +      L       
Sbjct: 271 GLHTYIAIKCPLFDESGRAYAVCGISTDISDRKRTEAEREMLLCREQAARAELERTGRLK 330

Query: 444 SEGVAVFGPDGR-----IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            E +A+   + R     I   +   R    ++E        I   A   S+  ++     
Sbjct: 331 DEFLALLSHELRTPLTAILGWSQLLRLRGPSDEILGRALGTIERNARAQSKLVDDLLDMS 390

Query: 499 LFAAIITSFDDERKSLQGTLELLSDS 524
                  S D E   L   LE L +S
Sbjct: 391 RIIGGRLSLDVEVVDLTEMLETLLES 416



 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 12/145 (8%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           S   + +E A+       L     + + + D+   +++ +D  G  L  N  Y++     
Sbjct: 166 SNAALEAENADRRRAELALRESQHLLQAIIDNSTAVIFVKDLEGRYLMINRRYEELFHVT 225

Query: 230 GIVFQKAIGESRKLFKEEIKKRMI---SSSALEKNFCETVSTLEHGNNKSYKIV------ 280
                 A      LF  E    +      +       E   ++  G+     I       
Sbjct: 226 --AQWIAGKTDYDLFPAECADALRAFDRRAVAAGGPLEIEESVPQGDGLHTYIAIKCPLF 283

Query: 281 -RVLNSFGEAGIAIDVSKEITVNDQ 304
                ++   GI+ D+S       +
Sbjct: 284 DESGRAYAVCGISTDISDRKRTEAE 308


>gi|75906587|ref|YP_320883.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
 gi|75700312|gb|ABA19988.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
          Length = 1184

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 147/869 (16%), Positives = 296/869 (34%), Gaps = 159/869 (18%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
            I +R     +       L E+  + +++ ++L +     ++ D             + + 
Sbjct: 206  ITERKKAEAERERL---LHELETERTRFEAVLRQMPAGVMIADA---------DSGKLVL 253

Query: 105  IPQTDTDLLS--FENWLKFHHYIKLSKATEKLRKEGQSF--------------------- 141
              +    +L   FE+ L+   Y+ ++      R +GQ +                     
Sbjct: 254  TNEQAKQILRYNFEDSLELEEYVPVTPF-AAFRCDGQPYTPYEYPLPRSLLTGEVISQEE 312

Query: 142  ---------DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
                      +     +   +  +G++  +        +       +E   + ++     
Sbjct: 313  MLLRWEDNSHIFISVNSAPILNSQGQIVAAAIV--FQDITERKRLESELQQREQE----- 365

Query: 193  SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF-------QKAIGESRKLFK 245
              FK++ ++   ++   D+    L+ + + +  T     VF            E    + 
Sbjct: 366  --FKMVAENAPDIISRVDREFRHLYVSPAVEAATGIPPEVFIGKTNTELGMPEEICTFWH 423

Query: 246  EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--SFGEAG----IAIDVSKEI 299
            E +++   +       F     T      + Y+        S G A     IA DV+   
Sbjct: 424  ENLQRAFDTGQKQVVEFSFPTPTGL----RWYQSHLAPEFASDGSATTLVNIARDVTDYK 479

Query: 300  TVNDQLTHTYE------------------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
             +   L    E                  I     V IA+ D  +     N++  ++  +
Sbjct: 480  RIEQALLDNEERLRLALTVAQAAQRQLATIFETSPVGIALLDSQQRFVAINQALAQINGL 539

Query: 342  DLAFLATNP-------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
                            S+ ++++         E     ++  N+         + + ++L
Sbjct: 540  TRQEHLGRSITELFGESDPQVVQVFHDIYTTGEPFISPSFAVNLPGRSDRQPGYYNVYYL 599

Query: 395  PNGQTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQ---------GETIDHLS 444
            P          SN +   + ++  ++T QV LE     L +             T++ L+
Sbjct: 600  P-------TTNSNHQVEDVLVYVLDVTEQVRLERGLRFLSETSKVLASSLDYQTTLERLA 652

Query: 445  E------------------------GVAVFGPDG-----RIKLSNP--------AFRSLW 467
            +                         VA   P        I+   P        A  +L 
Sbjct: 653  QLAVPELADWCTVHMVAENGSVEEIAVAHVDPAKLAWAEEIRRKYPLNLNDPRGAALTLR 712

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-SDSVL 526
              + + L        + A     + E      F + +T     +    G +  + ++S  
Sbjct: 713  TGQSDLLIDIPDELLVQAARDPEHLEILRQVGFKSAMTVPLRTQTRTLGVISFICAESGH 772

Query: 527  EYSIIPLPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +Y    +  A+ +    +   D+    R           A+ IK+ F+  +S+ELRSPL 
Sbjct: 773  KYDQSSMQLAEELAYRASLAIDNAHLYRLAQSDRTKAEAANRIKDEFLAVLSHELRSPLN 832

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             I+G++ +L+T +L      Q+  +E I  ++ +   L+ D+LD++ +  G M LN + +
Sbjct: 833  PILGWSRILRTKQLSPTKVDQA--LETIERNAKLQAQLIEDLLDVSRILQGKMTLNVAPV 890

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             L   +    +++       NI I+       G+ V D+ RL Q+   +LSNA+ F+  G
Sbjct: 891  NLAATITAALETVQLAAEAKNIHIQTTLKPIAGNVVGDQNRLQQVIWNLLSNAVKFTPSG 950

Query: 706  STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
              + ++ A+ N      VK++G  I  +    VF  F        R   G+GLGL+IV  
Sbjct: 951  GQIEVQLAQVNLYAQIQVKDSGKGIAREFLPYVFEYFRQEDGATTRKFGGLGLGLAIVRH 1010

Query: 764  FINLHGGHVSISSSDEG--VTTINCRIPS 790
            F  LHGG V + SS       T   R+P 
Sbjct: 1011 FTELHGGTVHV-SSLGQDLGATFTVRLPL 1038



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 103/292 (35%), Gaps = 27/292 (9%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               IL ++T A   FD+N +  + N++ V++       L      DE+          P
Sbjct: 104 QVTTILESITDAFVAFDENWHYTYVNQAAVKILHKTPVELIGKHVWDEVF---------P 154

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
           E +    ++E   +V +      + +       L        +G  ++ F ++T +   E
Sbjct: 155 ELVGGVAYQELHRAVAEQVAVSWEEFGESVQCCLEANAYPFAQGVAVY-FRDITERKKAE 213

Query: 427 TKYNTLV-------KVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENR---LS 475
            +   L+             +  +  GV +   D G++ L+N   + + +        L 
Sbjct: 214 AERERLLHELETERTRFEAVLRQMPAGVMIADADSGKLVLTNEQAKQILRYNFEDSLELE 273

Query: 476 PGTHIRNIAA-TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               +   AA  C         + L  +++T     ++ +    E  S   +  +  P+ 
Sbjct: 274 EYVPVTPFAAFRCDGQPYTPYEYPLPRSLLTGEVISQEEMLLRWEDNSHIFISVNSAPIL 333

Query: 535 NAQTM-----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           N+Q       + F ++T+  R E  L ++ +  +   E     +  V  E R
Sbjct: 334 NSQGQIVAAAIVFQDITERKRLESELQQREQEFKMVAENAPDIISRVDREFR 385



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 88/298 (29%), Gaps = 26/298 (8%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            + +S+       D+     + N +  K    +  V         ++F E +        
Sbjct: 107 TILESITDAFVAFDENWHYTYVNQAAVKIL-HKTPVELIGKHVWDEVFPELVGGVAYQEL 165

Query: 257 ALEKNFCETVSTLEHGNNK--SYKIVRVLNSFGEAGIAIDVSKE---ITVNDQLTHTYEI 311
                    VS  E G +     +      + G A    D+++        ++L H  E 
Sbjct: 166 HRAVAEQVAVSWEEFGESVQCCLEANAYPFAQGVAVYFRDITERKKAEAERERLLHELET 225

Query: 312 --------LHNLTVAIAIFDQN-RYLQFHNRSFVEL--WEIDLAFLATNPSNDELLEFLR 360
                   L  +   + I D +   L   N    ++  +  + +               R
Sbjct: 226 ERTRFEAVLRQMPAGVMIADADSGKLVLTNEQAKQILRYNFEDSLELEEYVPVTPFAAFR 285

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIW-- 414
              +      +   +  +     S E     W   +   + + V S P    +G  +   
Sbjct: 286 CDGQPYTPYEYPLPRSLLTGEVISQEEMLLRWE--DNSHIFISVNSAPILNSQGQIVAAA 343

Query: 415 -MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +F+++T +  LE++     +      ++  + ++    + R    +PA  +      
Sbjct: 344 IVFQDITERKRLESELQQREQEFKMVAENAPDIISRVDREFRHLYVSPAVEAATGIPP 401


>gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010]
 gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010]
          Length = 929

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 163/382 (42%), Gaps = 28/382 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
              TK     K+    +D +   V     D   +  N          +     G     +
Sbjct: 146 QSRTKLAETNKMLSTVLDAIPVRVFWKNHDLEFQGVNRVLLEDAGMNDVSEIIGKTDYQL 205

Query: 484 A-ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNA-- 536
             A  +  Y + D            D  R  LQ   EL+  +      + + +PL N   
Sbjct: 206 PWADFADKYKKDDK--------AVLDSGRSMLQIEEELVDRNGNRLWAKTNKVPLLNDKN 257

Query: 537 ---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                + TF ++T +  AE+ L    E   +A+  K+ F+ ++S+ELR+PL  +IG  +L
Sbjct: 258 EVIGVLGTFEDITQAKIAEQELIVAKEQAEQANIAKSQFLANMSHELRTPLNGVIGTLNL 317

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +   SLN++QS  V     S+  L  L+ND+LDL+ +++G ++L Y    L++LL E
Sbjct: 318 LAAT---SLNARQSNLVNISKHSAESLFGLLNDVLDLSKIESGKLELEYHNEDLDELLAE 374

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST----V 708
           V + +A +  E  + +   +          DR RL QI + ++ NA+ F+ KGS      
Sbjct: 375 VARGMAGRAEEKGLELLCPAHFMSSCVAKVDRLRLRQILNNLIGNALKFTEKGSITVDMT 434

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           ++K         FS+ + G  I E     +F RF        R   G GLGL+I    + 
Sbjct: 435 VIKKTMPEATLRFSISDTGVGISEHDQALLFERFKQLDGSSTRPQAGSGLGLAICRQLVE 494

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L GG + +SS+    +T    I
Sbjct: 495 LMGGRIGVSSTLGQGSTFWFEI 516


>gi|212692259|ref|ZP_03300387.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|265752877|ref|ZP_06088446.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|212665136|gb|EEB25708.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|263236063|gb|EEZ21558.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 807

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 206/510 (40%), Gaps = 30/510 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     +  +   I  NL   I ++D++ ++        +L E ++         D +  
Sbjct: 305 ESEARLEKAYLQNIYKNLPAGIELYDKDGFMT-------DLNEKEMEIFGLRHKEDVIGL 357

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQ-TLHVIVTSNP------- 408
            L     LP+ L  K        + +       D ++  +   T+ +I    P       
Sbjct: 358 NLFDNPLLPQGLKDKLKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLYDALGN 417

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRS 465
               + +  + T   +  +K     +      ++   G A F     DG     N  +R+
Sbjct: 418 LINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDG--YAVNSWYRN 475

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSD 523
           + + E   L+    + +      R         +     +    + + L   GT      
Sbjct: 476 IGEKEGTPLNEIIKVHSHFHPDDRRMMLRFFDQVLIREASHLRRDVRILREDGTYTWTRV 535

Query: 524 SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +V+     P       +    ++T+    ER L    +   + D +K++F+ ++S+E+R+
Sbjct: 536 NVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRT 595

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL  ++       + QY+  +  ++ +LL L++DILDL+ +++G  +   
Sbjct: 596 PLNAIVGFSSLLTETEDMK---DRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVK 652

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S   +N L  E+ +S+  K+    + +            AD+ RL Q+ S  ++NA+ F+
Sbjct: 653 SDTDVNLLCGEIIRSLRMKVPA-GVELVFEKCLPECHVWADKNRLNQVISNFINNALKFT 711

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             GS  +    + +G   F V++ G  IP +  K+VF+RFV         G GLGLSI +
Sbjct: 712 FSGSITLGYYRQTDGYLRFYVRDTGMGIPRNKIKTVFDRFVKLNSFVH--GTGLGLSICK 769

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           S +   GG + + S +   +      P ++
Sbjct: 770 SLVEQMGGTIGVESEEGEGSCFWFTYPYQD 799


>gi|16081092|ref|NP_391920.1| two-component sensor histidine kinase YycF [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221312017|ref|ZP_03593864.1| hypothetical protein Bsubs1_21801 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316342|ref|ZP_03598147.1| hypothetical protein BsubsN3_21707 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321255|ref|ZP_03602549.1| hypothetical protein BsubsJ_21660 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325538|ref|ZP_03606832.1| hypothetical protein BsubsS_21816 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321313601|ref|YP_004205888.1| two-component sensor histidine kinase YycF [Bacillus subtilis BSn5]
 gi|23396979|sp|Q45614|YYCG_BACSU RecName: Full=Sensor histidine kinase yycG
 gi|1064813|dbj|BAA11299.1| yycG [Bacillus subtilis]
 gi|2636587|emb|CAB16077.1| two-component sensor histidine kinase [YycF] [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291486677|dbj|BAI87752.1| hypothetical protein BSNT_06199 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019875|gb|ADV94861.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           BSn5]
          Length = 611

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/416 (22%), Positives = 164/416 (39%), Gaps = 32/416 (7%)

Query: 385 SETHKDTWHLPNGQTLH-VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETID 441
           S+  K    L  G     V    +   G +   F +LT ++ D +       +     I 
Sbjct: 211 SDMRKQAMELAKGNFSRKVKKYGHDEIGQLATTFNHLTRELEDAQAMTEGERRKLASVIA 270

Query: 442 HLSEGVAVFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           ++++GV     +G I L N PA   L  + E  L     I ++      Y         F
Sbjct: 271 YMTDGVIATNRNGAIILLNSPALELLNVSRETALEM--PITSLLGLQENY--------TF 320

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             ++   D     ++   EL    V  +S+I   + +       + D    E        
Sbjct: 321 EDLVEQQDSMLLEIERDDELTVLRV-NFSVIQREHGKIDGLIAVIYDVTEQE-------- 371

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              K D+ +  FV +VS+ELR+PLT +  + + L      + +    +++      +  +
Sbjct: 372 ---KMDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDI-APRFLMVTQNETERM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + LVND+L L+  D+   + N   I +   ++ +         E ++        +    
Sbjct: 428 IRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFE-MTKEQHVEFIRNLPDRDLYV 486

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             D+ ++ Q+   I+SNA+ +S +G  V   +    +      SVK+ G  IP+   + V
Sbjct: 487 EIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKV 546

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF        R   G GLGL+I +  +  HGG +   S +   TTI   +P KE
Sbjct: 547 FDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKE 602


>gi|116749638|ref|YP_846325.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698702|gb|ABK17890.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 823

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 2/234 (0%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L +AD +++ FV ++S+ELR+PL +IIGF+ LL  ++ G+L +    Y E I+ +  
Sbjct: 309 NMELLEADHLRSEFVANMSHELRTPLNSIIGFSGLLMKNRGGNLVATDLSYAEKINRNGK 368

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LLNL+NDILDL+ ++AG M+L      ++ L  EV   +  +  E N+ +   + G++ 
Sbjct: 369 HLLNLINDILDLSKIEAGRMELQIGPTRIDVLTKEVVDMLRPQADERNLSLTFETAGEIP 428

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F  D ++L ++   +L NA+ F+ KG   +   ++        V ++G  IP+D  +++
Sbjct: 429 MFETDGEKLKRVLINLLGNAIKFTHKGGVKVRLISQSGHRLNIEVNDSGIGIPQDKLETI 488

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  F        R   G GLGL+I  S + +  G +S+SS     +T    +P 
Sbjct: 489 FQPFRQVDSSTSREYGGTGLGLTITRSIVEMLRGEISVSSKPGEGSTFTVSLPL 542


>gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1691

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 160/375 (42%), Gaps = 19/375 (5%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           + N +V      +D+  + +      G +   NPA   L+      +   +    +    
Sbjct: 257 ELNQMVARHKAVLDNAQDAIITTDQQGDVLSYNPAAERLFGYPRQNVMGVSLTERLIPES 316

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY----SIIPLPNAQTMLT-- 541
            +        +     +    ++ + L+   + +   +++     S +P    +   T  
Sbjct: 317 LQNKQAPSLTNAMHGALEMVPNKGR-LEAIGKRIDGELIDLQVALSAMPQQGGELHYTAF 375

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++TD  +  ++L E   A   A + K++F+ ++S+E+R+P+  ++GFTDL      G 
Sbjct: 376 IQDITDKKQLLKSLEETLSAAESASKAKSAFIANMSHEIRTPMNAVLGFTDLALR---GD 432

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ K   Y+E    +S  L+ ++NDILD + +D G ++L+     L+ LL  +    + +
Sbjct: 433 LSPKVRDYLEKTKNASHSLMGIINDILDFSKMDVGRLELDPVKFDLHFLLERLADLFSKQ 492

Query: 662 MHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----- 715
             ++ + +  ++          D  RL QIF  ++ NA+ F+ K   + ++A  +     
Sbjct: 493 AADHAVDLVFLAPLNFNQVLYGDAMRLEQIFINLIRNAVKFT-KNGFITVRAQPELLEGH 551

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                 SV ++G  I  +    +F  FV       RR  G GLGLSIV+  ++L  G V 
Sbjct: 552 RVRLTCSVSDSGIGIDPEQLPHLFAPFVQADSSTTRRFGGTGLGLSIVKRLVSLMDGSVW 611

Query: 774 ISSSDEGVTTINCRI 788
             S     +  +  I
Sbjct: 612 AESEPGKGSQFHFEI 626



 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 6/254 (2%)

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               +   +   A R    + +     +  K+ F+  +S+E+R+PL  I+G  +LL  S  
Sbjct: 1286 QVRMRTAELELATREAELRKDEAEAGNRAKSEFLAIMSHEIRTPLNAILGTHELLSES-- 1343

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             +L+S+Q + +E    +  +LLNLVN+ LDLA ++AG + L Y+   L  L+ E+ Q   
Sbjct: 1344 -ALSSEQQRLMEISRNAGELLLNLVNETLDLAKIEAGKLDLEYTIFDLPRLVEEITQIKR 1402

Query: 660  TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   +R++     ++  FV  D  RL QI   +LSNA+ F++ G+  +  +      
Sbjct: 1403 VAAEHKGVRLESEMALEVPRFVMGDPDRLRQILVNLLSNAIKFTNSGTVSLQMSRGVADR 1462

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              F V + G  I     + +F+ F        R   G GLGL+I +      GG + + S
Sbjct: 1463 TFFKVSDTGVGIAAHSMEKIFHPFTQADTSTTRKFGGTGLGLTICKHLCEAMGGDIQVES 1522

Query: 777  SDEGVTTINCRIPS 790
                 +T +  +P 
Sbjct: 1523 QVGVGSTFSVNLPL 1536



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 21/161 (13%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +A  V +   +N  +     +L N   AI   DQ   +  +N +   L+           
Sbjct: 248 MAESVERYGELNQMVARHKAVLDNAQDAIITTDQQGDVLSYNPAAERLFGYP-------- 299

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP------NGQT--LHV 402
               ++    +   +PE L  K       +++ + E   +   L       +G+   L V
Sbjct: 300 -RQNVMGVSLTERLIPESLQNKQAPSLTNAMHGALEMVPNKGRLEAIGKRIDGELIDLQV 358

Query: 403 IVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGET 439
            +++ P+ G         +++T +  L       +      
Sbjct: 359 ALSAMPQQGGELHYTAFIQDITDKKQLLKSLEETLSAAESA 399


>gi|23502469|ref|NP_698596.1| sensory box histidine kinase [Brucella suis 1330]
 gi|81752215|sp|Q8FZ86|PDHS_BRUSU RecName: Full=Cell-division control histidine kinase pdhS
 gi|23348461|gb|AAN30511.1| sensory box histidine kinase [Brucella suis 1330]
          Length = 1035

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|78221304|ref|YP_383051.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78192559|gb|ABB30326.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 661

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 146/342 (42%), Gaps = 23/342 (6%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQ 515
           + SL++  +  L  G ++ ++    S          L   ++        ++   R   Q
Sbjct: 167 YVSLFEPWQWVLGSGVYLDDVQDEISMLEARVITGALVTLLLSVVFSAYAAYRINRPLRQ 226

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                 +    + S++   +     T   +    R    L    +    A  +K  F+ +
Sbjct: 227 ALFCAAAAMGHDTSVV--EDKSHDETHQVLHTIERMVNDLKRSRDEAESASRMKGEFLAN 284

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  IIG T+L   +    L+  Q + +E I +S+  LL L+NDILD + ++A
Sbjct: 285 MSHEIRTPMNAIIGMTELTLET---PLSPSQRENLEIIGSSAESLLGLLNDILDFSRIEA 341

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKI 694
           G + L      L + +      +A + H   + + +     L   F+ D  RL Q+   +
Sbjct: 342 GRLLLEKVPFDLRNTVEGALDVVAPQAHGKGLELILDVARDLPEAFIGDPTRLRQVLINL 401

Query: 695 LSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           LSNA+ F++KG  V LK  R       D    +F+V + G  IP D    +F  F     
Sbjct: 402 LSNAVKFTAKGE-VGLKVERAPSSGTDDGVMLLFTVSDTGIGIPADKLSLIFESFTQADG 460

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              R   G GLGL+I  + +++ GG +S+ S+    +T    
Sbjct: 461 STTRKYGGSGLGLAICRALVSMMGGDISVKSAVGVGSTFRFT 502


>gi|23016597|ref|ZP_00056351.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 734

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 161/373 (43%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           + E +          T D  + G++   PD R    N  F S+   E   L  G    +I
Sbjct: 355 EREARLADSEDRFRATFDQAAVGMSHSTPDRRFIRMNRRFASMLGYEPEEL-IGRSTLSI 413

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML--- 540
                R     +   +    I SF  E++ ++   +  S + +  ++  L     +    
Sbjct: 414 THPEDRILATDEIAAMIRGDIQSFATEKRYIR---KDGSIAWVNLTLSALRRDGRVEYLI 470

Query: 541 -TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++    +AE  L    E    A   K+ F+  +S+ELR+PL  IIGF + + +  L
Sbjct: 471 GVTEDIERRKQAEVQLLAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVL 530

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G +  +  +Y   I+AS   LL ++ DILDLA ++AG M+L+ + + +  ++    + + 
Sbjct: 531 GPIPERYREYAGDIAASGRHLLGIITDILDLAKIEAGRMELDENPVEIAPVVEAAIRLLR 590

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGD 718
            +     + +       L   +AD +R+ Q+   +L+NA+ F+  G +V + A    +G 
Sbjct: 591 DRGTAARLDLHSDIPASLPRILADERRIRQVVINLLANAVKFTPHGGSVSVSANLTTDGG 650

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
               V + G  + ++        FV    R   +  G GLGL +V + + +H G ++I+S
Sbjct: 651 LALHVSDTGIGMTDEEMSQAVEPFVQVDARIARRHEGTGLGLPMVAAIMEMHRGTIAIAS 710

Query: 777 SDEGVTTINCRIP 789
                TT+    P
Sbjct: 711 RPNQGTTVTVTFP 723



 Score = 38.0 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 52/188 (27%), Gaps = 26/188 (13%)

Query: 283 LNSFGEAGIAIDV------SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           +   GE G   D        +E  + D             V ++    +R     NR F 
Sbjct: 336 IGEVGEMGDTFDTMVGALNEREARLADSEDRFRATFDQAAVGMSHSTPDRRFIRMNRRFA 395

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS---SETHKDTWH 393
            +   +   L    +             +    +     + I ++ +    S   +  + 
Sbjct: 396 SMLGYEPEELIGRSTLS-----------ITHPEDRILATDEIAAMIRGDIQSFATEKRYI 444

Query: 394 LPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
             +G    V +T +           I + E++  +   E +     +         S+ +
Sbjct: 445 RKDGSIAWVNLTLSALRRDGRVEYLIGVTEDIERRKQAEVQLLAAKEQAESASRAKSDFL 504

Query: 448 AVFGPDGR 455
           A    + R
Sbjct: 505 AGMSHELR 512


>gi|254694275|ref|ZP_05156103.1| sensory box histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|261214583|ref|ZP_05928864.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 3 str. Tulya]
 gi|260916190|gb|EEX83051.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 3 str. Tulya]
          Length = 1035

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMLLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
 gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
          Length = 740

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 159/392 (40%), Gaps = 34/392 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETID----HLSEGVAV--FGPDGRIKLSNPAFRS 465
            I +F  +T   +LE K    +K +   ++       + V       +G I  ++ AF  
Sbjct: 230 VILIFIVVTYFTNLEKKRLEQLKEKQYKLNKSVKSFGQNVIASNTDLNGFITYASKAFCD 289

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +    E  L   +H        +   +     +L+  +  S     ++ +G ++  + + 
Sbjct: 290 ISGYSEEELMGRSH--------NLIRHPDMPQELYKEMWKSIKS-GETWEGDIKNKNKA- 339

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK--NEALRKADEIKNSFVQHVSYELRSP 583
                      +       +       + L           A + K  F  ++S+ELR+P
Sbjct: 340 ----------GEFYWVRSTIFPDYNYNKKLIGYSSIRHDITAQKAKEEFFSNMSHELRTP 389

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+GF ++L        + K  +Y+ ++  SS  LLNL+NDILDLA +  G   ++  
Sbjct: 390 LNAILGFLNILNKQIS---DKKHLEYLRHVGTSSKQLLNLINDILDLAKIKTGEFTVDAH 446

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFS 702
                + L +  Q     + + NI +K      L G F+ D  R+ QI   +LSNA+ F+
Sbjct: 447 EFNAYEELKDYAQQFEGMLIDKNISLKSHISHDLKGVFIGDLFRISQIILNLLSNAIKFT 506

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             G T+ L        F   V++ G  +  D+   +F  FV       R   G GLGLSI
Sbjct: 507 PDGGTISLYIDYKEEKFSIVVQDTGIGMSPDVQDKIFKPFVQADGSTTRKYGGTGLGLSI 566

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +  I L  G + + S +   +T   +IP ++
Sbjct: 567 TQKLIELMNGKLILESQEGKGSTFKVKIPMQK 598


>gi|170750082|ref|YP_001756342.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656604|gb|ACB25659.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1124

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/677 (16%), Positives = 230/677 (33%), Gaps = 65/677 (9%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           + A +R   +   + E+       +  ++ +++ + L    ++ +      G  +W+   
Sbjct: 184 AQAAIREAVIREQHREINARARAQEAANHQLTMAEQLASVGNWRI--ELGDGQPVWSASL 241

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKS 276
           Y      +       +    +++  + + R+ +  A           E       G  + 
Sbjct: 242 YA-IAGRDPATPPPHLDVFSEIYHPDDRARLEAIVADAVARRTRFDFEARLLRPDGELRD 300

Query: 277 YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD-----QNRY 327
             +  +    G +    G+ IDV++     D++  +      L  A+ +        +  
Sbjct: 301 VVVRGMARGEGASAGLFGVLIDVTERRRAEDEVRRSELRYRGLAEALPLLVWTMRVGDGR 360

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
             + N  F   +          P   E L      +    +  W           ++   
Sbjct: 361 ATYVNAQFQAYYG------PIGPERAERLVRNHPEDAAAMEAAW-------IRAVETGTG 407

Query: 388 HKDTWHLP--NGQTLHVIVTSNP------RGGT---IWMFENLTVQVDLETKYNTLVKVQ 436
           +   W +   +G      ++  P       G     +    ++   V           + 
Sbjct: 408 YSGQWRIRRHDGVYRWHKLSLIPIRLDPADGAVAEWLGTALDVDDIVTARLAVEEARGLL 467

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              +D    G   +     + + +P    +    +   +         A      + +D 
Sbjct: 468 DIALDAAEAGTWDWDMRTGLAVLSPESARMHGLPDTGGAHTISASAWTALIDPD-DVADV 526

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           W      + S        +     L       S       + +   +++T+    E AL 
Sbjct: 527 WTEIRRAVESGTPYAAEFRVGARWLYARGRTLSGADGQPQRMVALHLDITERKAVEAALR 586

Query: 557 EK-------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                         +A   K+ F+  +S+E+R+PL  I+G+ DLL      ++ ++  + 
Sbjct: 587 TATRDAEAARTEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDG--DAIQNEDRRR 644

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I +S   LL +VNDILD + ++AG + L+  T  L  +++     +      + + I
Sbjct: 645 LELIQSSGAALLTVVNDILDFSKIEAGELTLDPVTFPLVSIVDGTVSIVRGSALRSGLAI 704

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------NGDF 719
           +   D  L +  V D  RL Q+   +L+NA+ F+ +GS  ++    D             
Sbjct: 705 EARIDPALPTFVVGDAGRLRQVLLNLLNNAVKFTPEGSVTVIVEREDAGGAPDGRPGDTV 764

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            FSV + G  I       +F RF        RR  G GLGL+I    + L GG + + S 
Sbjct: 765 RFSVVDTGIGIAPAQQDRLFKRFSQVDGSISRRFGGTGLGLAISRHLVTLMGGEIGVESR 824

Query: 778 DEGVTTINCR--IPSKE 792
           +   +T   R  +P  E
Sbjct: 825 EGAGSTFWFRLVLPRAE 841


>gi|115377643|ref|ZP_01464838.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365352|gb|EAU64392.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 593

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/508 (20%), Positives = 206/508 (40%), Gaps = 38/508 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +E    +       +L+ L  A+     +  L + N+ + E   ++       PS +  
Sbjct: 90  EREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAE----EPSLEVF 145

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GT 412
           L+ +  A++   +   + W E +  V +     +   H  +G     +  + P     G 
Sbjct: 146 LKVVHPADR---EHMRREWTEAVRQVSRMEREFRMRRH--DGTWRWHLGRAVPERDGTGR 200

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEE 471
           +  F  +   +D + +    ++    T+D   + V +F P+   +  +N         E 
Sbjct: 201 LVGFIAVATDIDDKKRAEATLERFKATLDATLDCVLMFEPEHLTLTYANVGATKQLGLER 260

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT------SFDDERKSLQGTLELLSDSV 525
            +L     +          ++E     + A + +      ++    +   GT E+  + V
Sbjct: 261 EQLVGTRMLE-----VEDAFDEEAFRKILAPLQSGEQPSHTYSTTHRRRDGT-EIPVEVV 314

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           L+Y        + +    ++T+  RAE AL           E K++F+   S+ELR+PL 
Sbjct: 315 LQYVAAGGGPGRFVSVARDITERKRAEEALLLA-------SEAKDAFLAAASHELRTPLA 367

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
              G   L      G   +   + ++ I+     +  LV D+LD++ + AG + L+    
Sbjct: 368 AAKGHAHLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLDLERF 427

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  L+ E    +      + +R+++    +      DR RL Q+ + +LSNA+ +S +G
Sbjct: 428 DLGTLIRETCDRMGVLSQLHPLRVELQEQLEGLW---DRGRLDQVLTNLLSNAIRYSPEG 484

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             V++KAA D      SVK+ G  IP +    +F RF       +  G+GLGL+I +  +
Sbjct: 485 GEVLVKAAADGEGVQLSVKDCGVGIPPEKQGLIFERFGRAHGS-KYGGLGLGLTISQGIV 543

Query: 766 NLHGGHVSISSSD--EGVTTINCRIPSK 791
             HGG + + S       +T +  +P +
Sbjct: 544 EQHGGRIWVDSQGCAGDGSTFHVWLPRE 571



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 82/288 (28%), Gaps = 28/288 (9%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            S L     +          ++ L ++L   +W     G + + N  +++ T  E     
Sbjct: 82  QSALLRQKEREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAEEPS 141

Query: 235 -----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE- 288
                K +  + +      ++   +   + +   E       G  + +    V    G  
Sbjct: 142 LEVFLKVVHPADREHMR--REWTEAVRQVSRMEREFRMRRHDGTWRWHLGRAVPERDGTG 199

Query: 289 -----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR-YLQFHNRSFVELWEID 342
                  +A D+  +      L      L      + +F+     L + N    +   ++
Sbjct: 200 RLVGFIAVATDIDDKKRAEATLERFKATLDATLDCVLMFEPEHLTLTYANVGATKQLGLE 259

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ---- 398
              L        +   +       ++  ++     + S  + S T+  T    +G     
Sbjct: 260 REQL--------VGTRMLEVEDAFDEEAFRKILAPLQSGEQPSHTYSTTHRRRDGTEIPV 311

Query: 399 --TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              L  +      G  + +  ++T +   E       + +   +   S
Sbjct: 312 EVVLQYVAAGGGPGRFVSVARDITERKRAEEALLLASEAKDAFLAAAS 359



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 38/144 (26%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L  Q + E             ++ L E +   G DG++   N  +R     E    S   
Sbjct: 85  LLRQKEREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAEEPSLEV 144

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            ++ +      +        +        +   +   GT        +            
Sbjct: 145 FLKVVHPADREHMRREWTEAVRQVSRMEREFRMRRHDGTWRWHLGRAVPERDGTGRLVGF 204

Query: 539 MLTFVNVTDSVRAERALTEKNEAL 562
           +    ++ D  RAE  L      L
Sbjct: 205 IAVATDIDDKKRAEATLERFKATL 228


>gi|23099273|ref|NP_692739.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22777502|dbj|BAC13774.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
          Length = 584

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 156/368 (42%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP  +                 N   + 
Sbjct: 240 ALRQEKEQLSSIVSSMADGVFTLNREGEVLVINPPAKKYMDEWFY--------ENPDESE 291

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            + +  ++  +    +IT      K        +        + PL +   +   V V  
Sbjct: 292 GQNHLPTEVKEALLEVITKEYAVLKE-----SAVQGRSYVMLVTPLYDESHVRGCVAVIR 346

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          D+++  F+ +VS+ELR+P++ + G+++ +    + S   +++
Sbjct: 347 DMTEERRL----------DKLRKDFIANVSHELRTPISMLQGYSEAIVDD-VASSKEEKN 395

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +  + I   S  +  LVN++LDLA ++AG ++L   ++ +   +  +         E  +
Sbjct: 396 ELAQIIYEESLRMGRLVNELLDLARMEAGQIQLRLDSVAIQPFIERIVHKFQGISREEMV 455

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +++  D +      D  R+ Q+ + ++ NA+  +S    V + A  +       VK++G
Sbjct: 456 ELELTVDIEHQIGEMDPDRIEQVLTNLIDNAIRHTSNNGFVKVLAVSNQDKLYVEVKDSG 515

Query: 728 SSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           S IPE+    +F RF          +++G GLGL+I ++ I+ H G + + S  +  TT 
Sbjct: 516 SGIPEEDLPFIFERFYKADKSRVKKEKQGTGLGLAIAKNIIDAHHGSIYVKSKLDAGTTF 575

Query: 785 NCRIPSKE 792
           +  IP K+
Sbjct: 576 SFEIPIKQ 583


>gi|218289583|ref|ZP_03493803.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240233|gb|EED07416.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 590

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 165/397 (41%), Gaps = 33/397 (8%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V +    G +   F  L  Q+     + +   +     +  L +GV     DGR+ L
Sbjct: 207 RVRVVTKDEVGRLGHTFNALARQLAETIEQLSMEREGLQRILTSLQDGVVATDLDGRVVL 266

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +NP  +              H+R+++       +E    D   ++     +++ ++    
Sbjct: 267 ANPPAKR-------------HLRHLSVAERGIVDEERLPDRLMSLWVRVREQQDAVYRE- 312

Query: 519 ELLSDSVLEYSIIPLP--NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +      +  +++PL   +  T+   + V   +  ER L          D ++  F+ +V
Sbjct: 313 DTWDGRTIGITMLPLYEADGTTLRGALCVLRDITEERRL----------DRLRKDFIANV 362

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL+ + G+T+ L    +      + +  E I   +  +  LVND+L+LA +++G
Sbjct: 363 SHELRTPLSMLQGYTEALLDD-ISDDPDMRRELTEIIHDETLRMKRLVNDLLNLAQLESG 421

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             KL+++ + L  ++  V +        E+++  +V           D  RL Q+F+ +L
Sbjct: 422 QFKLHFARVDLTQVMRRVARKFQALASDEDHLSFEVSIPDHPVMVDGDEDRLEQVFTNLL 481

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRG 753
            NA   ++ G T+  +    +      V + GS IPE+    +F RF          R G
Sbjct: 482 DNAFRHTATG-TIRFELDIRHDYAYVRVADTGSGIPEEDVPYIFERFYKADKARTRSRSG 540

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGL+I    +  H G + + S     TT    +P 
Sbjct: 541 TGLGLAIARQLVIEHRGEILVESRLGEGTTFTVVLPL 577



 Score = 41.1 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 26/186 (13%)

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAF------LRILSLDGIYS------ELAE-TTLK 184
              F  V        +    R +   A       +R+++ D +         LA      
Sbjct: 174 ATGFAFVISKNLSRPLVDMTRAAEEMARGHYRQRVRVVTKDEVGRLGHTFNALARQLAET 233

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
            ++LS      + +  SL   V   D  G ++ AN   K++     +  +  + E     
Sbjct: 234 IEQLSMEREGLQRILTSLQDGVVATDLDGRVVLANPPAKRHLRHLSVAERGIVDE----- 288

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-------RVLNSFGEAGIAIDVSK 297
            E +  R++S     +   + V   +  + ++  I              G   +  D+++
Sbjct: 289 -ERLPDRLMSLWVRVREQQDAVYREDTWDGRTIGITMLPLYEADGTTLRGALCVLRDITE 347

Query: 298 EITVND 303
           E  ++ 
Sbjct: 348 ERRLDR 353



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 28/138 (20%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLATNPSNDELLE 357
             ++ +      IL +L   +   D +  +   N      L  + +A             
Sbjct: 235 EQLSMEREGLQRILTSLQDGVVATDLDGRVVLANPPAKRHLRHLSVAE-----------R 283

Query: 358 FLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------ 409
            +    +LP++L   W   +E   +VY+     +DTW   +G+T+ + +           
Sbjct: 284 GIVDEERLPDRLMSLWVRVREQQDAVYR-----EDTW---DGRTIGITMLPLYEADGTTL 335

Query: 410 GGTIWMFENLTVQVDLET 427
            G + +  ++T +  L+ 
Sbjct: 336 RGALCVLRDITEERRLDR 353


>gi|254429445|ref|ZP_05043152.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195614|gb|EDX90573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 782

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+ +TE+   L  A   ++ F+  +S+E+R+PL  IIG  D+LK +    L+ +Q   +
Sbjct: 382 LEQRVTERTGELNAALSARSEFLAVMSHEIRTPLNGIIGTVDMLKGT---PLDDEQRHNL 438

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LLNL+NDILD + ++AG M +  ++  L +L+NE       K H ++  + 
Sbjct: 439 NVIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLINESLALFQHKAHVHSNTLT 498

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---IFSVKNN 726
           +     +G   + D  RL QI   ++SNA+ F+  G T+ ++  RD  +     F V ++
Sbjct: 499 LEIAPHVGERCLGDPVRLRQILVNLISNAVKFTDNG-TITVRVQRDPDNADYAFFEVHDS 557

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+  + +F+ F        RR  G GLGL+I    + + GG + + S  +  +  
Sbjct: 558 GIGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSQPKQGSRF 617

Query: 785 NCRIP 789
             R+P
Sbjct: 618 WFRLP 622


>gi|148656419|ref|YP_001276624.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148568529|gb|ABQ90674.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 905

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 166/387 (42%), Gaps = 28/387 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + +++      V      +  LS+GV V   +G +   N A   +     + L      
Sbjct: 529 RRYEMQQLQEKAVSQSTAILQSLSDGVIVCDQNGAVITVNLAAEKILDRPIDELVTWNLG 588

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +     R  +E    DL A         R +L  T +L     +  ++ P+ + +  L
Sbjct: 589 DLLRRLLGRRVSELPLEDLLAHPWDERARPR-TLSTTFQL-GPRTISVTLDPVISTKEEL 646

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                    R             ++D +K  F+  VS+ELR+P+T+I GFT LL    LG
Sbjct: 647 LGAVAVFRDRTRE---------VESDRLKTEFIGTVSHELRTPMTSIKGFTQLLVMGNLG 697

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +N  Q +++  I +++  ++ ++ND+LD+  ++ G ++L    I + + L++V   + T
Sbjct: 698 PVNETQREFLNIIQSNAERMIAIINDLLDITKIETGSVELEIRPIHVAETLSKVLLDLQT 757

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------- 713
           K+HE    + +     L    AD  R  QI   ++SNA+ ++ +G ++ ++A        
Sbjct: 758 KVHERQQTLTLSLPAGLPLVRADAHRFNQILFNLVSNAVKYTPRGGSITIEAREVTAEAV 817

Query: 714 --------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
                   R        V++ G  I  D    ++ RF    +  + +  G GLGLS+V+ 
Sbjct: 818 PEDERDGLRPGRYIQIDVRDTGVGIAPDDVPRIWERFYRTENPLKVEAGGTGLGLSLVKP 877

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            + L GG + + S     +T +  +P+
Sbjct: 878 LVRLLGGRIWVESRINVGSTFSFVLPA 904


>gi|220909483|ref|YP_002484794.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866094|gb|ACL46433.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1331

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 132/804 (16%), Positives = 267/804 (33%), Gaps = 91/804 (11%)

Query: 65   ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHY 124
            + +   +Y  L+     L    D +     +  Q+   + +P      L +E  +     
Sbjct: 396  LQESEQRYRHLVELTPHLVWNADEQGHNTYVSPQMSAYLGLPPEQLLNLDWETVIHPEDV 455

Query: 125  IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLD----GIYSELAE 180
             ++ +   K  + G  +++    +    +  E R     A       D    G+ +++ +
Sbjct: 456  DRVHRTWMKAVQTGTPYEVEYRLRR---VDGEYRWHLVRAVFEGNEQDRKWFGVSTDIHD 512

Query: 181  TTLKCKKLSNHISVFKVLFDSLDF------LVWHRDQAG---DILWANISYKKNTETEGI 231
                   L    + ++ LFDS+D       +++          +L  N  +++ T  +  
Sbjct: 513  RKRAEIALRESEAKYRSLFDSIDEGFCLLEMIYDEADKAVDFRLLEVNQVFERQTGLQNT 572

Query: 232  VFQKAIGESRKLFKEEIKKRMIS-SSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEA 289
              +       ++        +   S+  +      V        + Y      +   G  
Sbjct: 573  AGK----LGSEVVPNTESHWLRGYSNVAQTGEPLRVENYHEYTGRWYSAYGSRVGGVGSR 628

Query: 290  GIAI---DVSKEITVNDQLTHTYE---ILHNLTVAI-AIFDQNRYLQFHNRSFVELWE-- 340
             +AI   D+++     + L  + E    L   + A+ A  D +      NR+   L E  
Sbjct: 629  RVAIVFDDITERKRAEEALRESKEQQAFLLKFSDALRAEPDAD---AVANRAIRMLSEQL 685

Query: 341  -IDLAFLATNPSNDELLEFLRSANKL--------------PEQLNWKTWKENIFSVYKSS 385
             +D  ++      D+  +F                     PE L     +  +      +
Sbjct: 686  RLDRCYIGVYRLADDRADFTHQVGNDRVPPLPDGVRLSDFPEALRVAFDRTLVIDDVAET 745

Query: 386  ETHKDTWHLPNGQT-LHVIVTSNPRGGT---------------------IWMFENLTVQ- 422
            E   DT     G   L  +V +  R G                      + + E++T + 
Sbjct: 746  EGLTDTDRRNLGALGLRALVAATLRKGENNPLWAMVAVSACPRRWTRSEVALAEDVTERT 805

Query: 423  ------VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
                     E             ++ +   V      GR+   +         + ++L  
Sbjct: 806  WAAMERARAEEALRASESRYRYLVEAVPHLVWTTDAKGRVTFVSQRLCDYIGLQASQLMN 865

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                  I         +     +   +    +       GT        + +        
Sbjct: 866  LEWRMVIYPEDVERVYQCWMHSVHTGLPFEAEYRIHRADGTYRWQLSRAMPFRNEQGEVV 925

Query: 537  QTMLTFVNVTDSVRAERA-------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            Q     +++ D    ER             E   +A+ IK+ F+  +S+ELRSPL  I+G
Sbjct: 926  QWFGLTLDIHDKQELERQRDQVLQQAQVAQEEAERANRIKDEFLSILSHELRSPLNPILG 985

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +  LL+   L    +KQ+  +  I  ++ +   LV+D+LD+A +  G + L  + + L  
Sbjct: 986  WAQLLQIKTLDQTTTKQA--LATIEHNAKLQTQLVDDLLDVARILRGKLSLQEAPVNLVS 1043

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            ++    + + T     ++ ++      +G    D  RL QI   +LSNA+ F+  G  V 
Sbjct: 1044 VIAAALEVVKTAADVKSVTLQPEL-TDIGQVRGDEARLQQIVWNLLSNAIKFTPTGGRVT 1102

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
            ++  +       +V + G  I       +F  F         Q  G+GLGLSIV+  +  
Sbjct: 1103 IRLEQVEDQAQITVTDTGIGIQPQFLPHIFESFRQQDTSISRQYGGLGLGLSIVKYLVEA 1162

Query: 768  HGGHVSISSS-DEGVTTINCRIPS 790
            HGG ++  S  +    T   ++P 
Sbjct: 1163 HGGTITAESPGENQGATFTVQLPL 1186



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/404 (13%), Positives = 120/404 (29%), Gaps = 43/404 (10%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
           AE       L    +  + + + +  L+W  +  G   W N  +    E  G  F++AIG
Sbjct: 135 AERPKTEAALRESEARLQAVTNLVPDLLWDSEPDGSTNWYNQRW---MEYTGQTFEQAIG 191

Query: 239 ES------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
                       +   ++   +         E       G  + + +       G     
Sbjct: 192 WGWIDAIHPDDREGSARRYREAVEQGVPLQQEHRIRRHDGAYRWFGVKASPLKDGSGKVV 251

Query: 290 ---GIAIDVSKEITVNDQLTHTYE---ILHNLTVAIAIF-DQNRYLQFHNRSFVELWEID 342
              G A D+ ++    + L  + E    L N   A+  + D      F N+ F++     
Sbjct: 252 KMYGAATDIHEQWVALEALRESEEKFRTLANTAPALIWYNDAQGKNCFINQYFLDFTGKS 311

Query: 343 LAFLAT-------NPSNDE--LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
              +         +P + E  ++++L + +   EQ +W   +  I         H   W 
Sbjct: 312 AEQIRGEGWHDLVHPDDAEHYIVDYLVAVH---EQRSWHN-RNRIRR-------HDGVWR 360

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
             +     +  T+    G + +  + T  ++         +     ++     V      
Sbjct: 361 WHDNYAQPLFSTNGIYLGHVGVTIDNTEAIEAGIALQESEQRYRHLVELTPHLVWNADEQ 420

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G     +P   +       +L        I        + +    +        +   + 
Sbjct: 421 GHNTYVSPQMSAYLGLPPEQLLNLDWETVIHPEDVDRVHRTWMKAVQTGTPYEVEYRLRR 480

Query: 514 LQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           + G     L  +V E +     + +      ++ D  RAE AL 
Sbjct: 481 VDGEYRWHLVRAVFEGNE---QDRKWFGVSTDIHDRKRAEIALR 521



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/423 (13%), Positives = 126/423 (29%), Gaps = 58/423 (13%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G  +++ E  +  + L      F+ L ++   L+W+ D  G   + N  +   T   G  
Sbjct: 255 GAATDIHEQWVALEALRESEEKFRTLANTAPALIWYNDAQGKNCFINQYFLDFT---GKS 311

Query: 233 FQKAIGESRKLFKEEIKKR------MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS- 285
            ++  GE                  +++                 G  + +         
Sbjct: 312 AEQIRGEGWHDLVHPDDAEHYIVDYLVAVHEQRSWHNRNRIRRHDGVWRWHDNYAQPLFS 371

Query: 286 -----FGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFV 336
                 G  G+ ID ++ I     L  + +   +L       +   D+  +  + +    
Sbjct: 372 TNGIYLGHVGVTIDNTEAIEAGIALQESEQRYRHLVELTPHLVWNADEQGHNTYVSPQMS 431

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW--KTWKENIFSVYKSSETHKDTWHL 394
               +           ++LL         PE ++   +TW + +    ++   ++  + L
Sbjct: 432 AYLGLPP---------EQLLNLDWETVIHPEDVDRVHRTWMKAV----QTGTPYEVEYRL 478

Query: 395 P--NGQTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
              +G+    +V +   G         +  ++  +   E              D + EG 
Sbjct: 479 RRVDGEYRWHLVRAVFEGNEQDRKWFGVSTDIHDRKRAEIALRESEAKYRSLFDSIDEGF 538

Query: 448 A----VFGP-----DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
                ++       D R+   N  F      +      G+ +            ES    
Sbjct: 539 CLLEMIYDEADKAVDFRLLEVNQVFERQTGLQNTAGKLGSEV--------VPNTESHWLR 590

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
            ++ +  + +  R            S     +  + + +  + F ++T+  RAE AL E 
Sbjct: 591 GYSNVAQTGEPLRVENYHEYTGRWYSAYGSRVGGVGSRRVAIVFDDITERKRAEEALRES 650

Query: 559 NEA 561
            E 
Sbjct: 651 KEQ 653



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 93/321 (28%), Gaps = 47/321 (14%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI---SYKKNTETE 229
           G+  +  E       L      ++ L +    LVW+ D+ G   + +    +Y      +
Sbjct: 381 GVTIDNTEAIEAGIALQESEQRYRHLVELTPHLVWNADEQGHNTYVSPQMSAYLGLPPEQ 440

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV----LNS 285
            +          +      +  M +         E       G  + + +  V       
Sbjct: 441 LLNLDWETVIHPEDVDRVHRTWMKAVQTGTPYEVEYRLRRVDGEYRWHLVRAVFEGNEQD 500

Query: 286 FGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIA----IFDQ-----NRYLQFHN 332
               G++ D+      EI + +       +  ++         I+D+     +  L   N
Sbjct: 501 RKWFGVSTDIHDRKRAEIALRESEAKYRSLFDSIDEGFCLLEMIYDEADKAVDFRLLEVN 560

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT---WKENIFSVYKSSETHK 389
           + F     +                    A KL  ++   T   W     +V ++ E  +
Sbjct: 561 QVFERQTGLQNT-----------------AGKLGSEVVPNTESHWLRGYSNVAQTGEPLR 603

Query: 390 -DTWHLPNGQTLHVIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            + +H   G+      +     G      +F+++T +   E       + Q   +     
Sbjct: 604 VENYHEYTGRWYSAYGSRVGGVGSRRVAIVFDDITERKRAEEALRESKEQQAFLLKFSDA 663

Query: 446 GVAVFGPDGRIKLSNPAFRSL 466
             A    D    ++N A R L
Sbjct: 664 LRAEPDAD---AVANRAIRML 681



 Score = 38.4 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 88/285 (30%), Gaps = 37/285 (12%)

Query: 55  VNETYSFLSEICDQLSKYHSLLTE----NNCLTIVWDGKDETPEI---IGQ-----LHQR 102
            +   +   +     ++   +L+E    + C   V+   D+  +    +G      L   
Sbjct: 661 SDALRAE-PDADAVANRAIRMLSEQLRLDRCYIGVYRLADDRADFTHQVGNDRVPPLPDG 719

Query: 103 IDIPQTDTDL-LSFENWLKFHHYIKLSKATEKLRKEGQSFDL------VAETQNDCAIKI 155
           + +      L ++F+  L      +    T+  R+   +  L            +  +  
Sbjct: 720 VRLSDFPEALRVAFDRTLVIDDVAETEGLTDTDRRNLGALGLRALVAATLRKGENNPLWA 779

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETT-------LKCKKLSNHISVFKVLFDSLDFLVWH 208
                 +C      S   +  ++ E T          + L    S ++ L +++  LVW 
Sbjct: 780 M-VAVSACPRRWTRSEVALAEDVTERTWAAMERARAEEALRASESRYRYLVEAVPHLVWT 838

Query: 209 RDQAGDILWANIS---YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
            D  G + + +     Y     ++ +  +  +    +  +   +  M S         E 
Sbjct: 839 TDAKGRVTFVSQRLCDYIGLQASQLMNLEWRMVIYPEDVERVYQCWMHSVHTGLPFEAEY 898

Query: 266 VSTLEHGNNKS--YKIVRVLNSFGEA----GIAIDVSKEITVNDQ 304
                 G  +    + +   N  GE     G+ +D+  +  +  Q
Sbjct: 899 RIHRADGTYRWQLSRAMPFRNEQGEVVQWFGLTLDIHDKQELERQ 943


>gi|326391595|ref|ZP_08213125.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992377|gb|EGD50839.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 456

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 149/364 (40%), Gaps = 22/364 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N         +  +  GV  F  + +I L N A R +   +E  L  G HI  +   
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDDNEKILLINDAARKILNIKEKDL-IGRHILEVVR- 162

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  S   DLF  +  + +   +SL+  +      V    I+   + Q +   + + 
Sbjct: 163 ------NSKLHDLFEDVKKNKNSSSRSLELNVFNKHLKVYTSPILHPISHQNLGFVLIID 216

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     R            ++I++ FV +VS+ELR+PLT+I GF + L+   + +  ++ 
Sbjct: 217 DITEMRRL-----------EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQTR- 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++ I   S  L  L+NDIL L+ ++          I L++ + ++   +       N
Sbjct: 265 DKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKN 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +K   +        ++ R  Q+   ++ N + ++ +G  V +    +    I  V++N
Sbjct: 325 ITLKKDLNCTDLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVEDN 384

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F RF        R   G GLGL+IV+  +    G + + S     T  
Sbjct: 385 GIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKF 444

Query: 785 NCRI 788
             + 
Sbjct: 445 IIKF 448



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 15/223 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +ND+      IL ++   +  FD N  +   N +  ++  I    L        +LE 
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDDNEKILLINDAARKILNIKEKDLIGRH----ILEV 160

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +R++        ++  K+N  S  +S E +    HL    +  +   S+   G + + ++
Sbjct: 161 VRNSKL---HDLFEDVKKNKNSSSRSLELNVFNKHLKVYTSPILHPISHQNLGFVLIIDD 217

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T    LE   +  V      +        +    G I+          +T +  L    
Sbjct: 218 ITEMRRLEKIRSEFVANVSHELRT-----PLTSIRGFIETLRNGAIDNPQTRDKFLDI-- 270

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            I   +   +R  N+         +   +  E   L   +E +
Sbjct: 271 -IDFESERLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDI 312


>gi|160887907|ref|ZP_02068910.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492]
 gi|317477835|ref|ZP_07937021.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156862593|gb|EDO56024.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492]
 gi|316905971|gb|EFV27739.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 462

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/426 (21%), Positives = 195/426 (45%), Gaps = 32/426 (7%)

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI-----WMFENLTVQVDLETKYNTLVK 434
            ++ ++ T ++   +P+G     +V  +   GT+     + F    ++   E      ++
Sbjct: 41  ELFDTAFTLQERLDIPDGFVQREMVYISILLGTLVLCLFFFFMQRRMKKLRERDRERYLQ 100

Query: 435 VQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           +    +D+L     V   +   R    N     L++         T    +    +    
Sbjct: 101 LLEGILDNLPIAAKVKDVNDGMRYTFWNKKAEELFECSAREAIGKTDFETMPEAAALIRK 160

Query: 493 ESD-------GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM--LTFV 543
           E +         +      T  ++ER + Q             + I L + +     T  
Sbjct: 161 EDEELVKTGIPQEGIRRFFTKKNEERFTFQNN-----------NFIKLSDGRKWIVYTAW 209

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    ER L    E   +++ IK++F+ ++S+E+R+PL  I+GF+ +L T       
Sbjct: 210 DITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILATEVS---E 266

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y++ I  ++ +LL L+NDILDL+ ++AG ++  Y+ + +N +++E++Q+ + ++ 
Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             ++R+  ++         D++R+ Q+F+  +SNA+ F++ GS  I     +N    F V
Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAAGSITIGYGMPENSYIRFYV 386

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G+ I  +  + +FNRFV       ++G GLGL+I ++ +    G + + S     +T
Sbjct: 387 TDTGTGISSENAQGIFNRFVKLDSF--KQGTGLGLAISQNIVKELKGEIGVESQLSKGST 444

Query: 784 INCRIP 789
               +P
Sbjct: 445 FWFTLP 450



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 15/161 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +E      L     IL NL +A  + D N      F N+   EL+E            + 
Sbjct: 91  RERDRERYLQLLEGILDNLPIAAKVKDVNDGMRYTFWNKKAEELFECSAREAIGKTDFET 150

Query: 355 LLEFLRSANKLPEQLNWKTW-KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           + E      K  E+L      +E I   +      + T+   N      I  S+ R   +
Sbjct: 151 MPEAAALIRKEDEELVKTGIPQEGIRRFFTKKNEERFTFQNNN-----FIKLSDGRKWIV 205

Query: 414 WMFENLTVQVDLETKYN-------TLVKVQGETIDHLSEGV 447
           +   ++T    +E K            +++   + ++S  +
Sbjct: 206 YTAWDITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEI 246


>gi|117925933|ref|YP_866550.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609689|gb|ABK45144.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 997

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 165/372 (44%), Gaps = 16/372 (4%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                +     +     +D   E + +F  DGR+  +N A   L       L   T  + 
Sbjct: 343 KKSARQMQLEREKYRGVVDQAGESLLIFDLDGRVVEANSAAEKLLGYRRVTLLNYTQDQL 402

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LEL-LSDSVLEYSIIPLPNAQTML 540
           +A   +      DG +       +F+    +  G  LE+ +    LE   +      T+ 
Sbjct: 403 LAPNSTLTIPNHDGDNAENPSHVTFETRLHTADGQDLEVEVWAGFLEIDYV----QHTLW 458

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++TD  R E  +    +   KA + K+ F+  +S+E+R+P+  I+G  +LL  ++  
Sbjct: 459 LARDITDRKRLEAEMVAARDMAEKAYQAKSIFLATMSHEIRTPMNAILGTAELLAETE-- 516

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L++ QS+YV   +++   LL ++NDILD++  +AG ++L      + +++ ++ + +A 
Sbjct: 517 -LDADQSRYVRMFTSAGENLLQVINDILDISKFEAGHIELEQRVFSVREMMGDLHKLLAY 575

Query: 661 KMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARD 715
           K  E  + + V  S+    S + D  RL Q+   +L NA+ F+  G+  +L    + A  
Sbjct: 576 KCKEKGLYLLVNASETTPDSLIGDPTRLRQVLINLLGNAIKFTDTGTVALLAHSEQIADK 635

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                F V + G  I +   + VF  F            G GLGLSI +S I+  GG ++
Sbjct: 636 QVQLAFHVVDTGIGISDADQEKVFRPFEQAGTYITRTHGGTGLGLSICQSLIHKMGGKIT 695

Query: 774 ISSSDEGVTTIN 785
           + S  +  +T  
Sbjct: 696 VHSRADHGSTFT 707


>gi|304318073|ref|YP_003853218.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779575|gb|ADL70134.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 565

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 165/408 (40%), Gaps = 45/408 (11%)

Query: 386 ETHKDTWHLPNGQT-LHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ-GETIDH 442
           E  K    +  G   +H+ + S+   G +  MF  ++ ++          K +    I +
Sbjct: 196 EVTKYAREMAEGNFDVHIDIKSDDEIGKLGSMFNFMSKRLKSTLNEMENEKSKVEAIISY 255

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +S+GV       R+ L N A   +      +++    +  IA    +  N          
Sbjct: 256 MSDGVIAKNDSNRVILFNNAAERMIGE---KITMDEPLEKIAQ--GQLKNTESLIYCNGK 310

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I+ SF                      + P+   + +   V V   +  ++ L       
Sbjct: 311 ILKSF----------------------VSPIKVDKNIDGNVFVLHDITEQQNL------- 341

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              D ++  FV +VS+ELR+PLT I  +T+ L     G     +++++  I      +  
Sbjct: 342 ---DNMRKEFVANVSHELRTPLTTIKSYTETLLND--GVDEEYRNRFLSIIDKEVDRMTR 396

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV D+L L+ +D+   KLN     LN+ +  +   I  +  + N ++   +  +  +   
Sbjct: 397 LVKDLLLLSKMDSNG-KLNLEETNLNEFIENILYKIKIEAQKKNQKLTFCAGEEKRNINI 455

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR ++ Q+   ++SNA+ +++ G  V +    D+     ++ +NG  IP+     +F RF
Sbjct: 456 DRDKMEQVLLNVVSNAIKYTNLGGYVRVFTKYDDDYAYITISDNGIGIPKKDLPRIFERF 515

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                   R   G GLGL+I +  +  HGG ++I S     T +  ++
Sbjct: 516 YRVDKGRSRELGGTGLGLAIAKEIVTAHGGEINIESEVGIGTIVYIKL 563


>gi|302391635|ref|YP_003827455.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203712|gb|ADL12390.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 592

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 166/380 (43%), Gaps = 23/380 (6%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F N+  +++ +    +  K + E I   + +GV     DG+I L NPA   +++ +E   
Sbjct: 233 FNNMADKLEAKINEISGEKNKIEAILRGMGDGVIAVDEDGKIILLNPAAEEIFQLKEE-- 290

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                 + +              D   A + + +D  + ++    +  + ++   + P+ 
Sbjct: 291 ------KTLGKYTMEVTRSHKLDDAIMASLKNGEDITEEIETIYPV--ERMIRVHVTPIK 342

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +T         + R   A+      LR+ ++I+  FV +VS+ELR+PLT+I G+ + L
Sbjct: 343 NDKT---------TERGAVAVLRDVTELRRLEQIRTEFVSNVSHELRTPLTSIKGYVETL 393

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +      ++  +++ I   +  L  L+ D+L+L+ +++     +   + LN ++  V
Sbjct: 394 LDERDCEPGVRER-FLQVIKDETDRLERLITDLLNLSQLESASDSFDQELVNLNQVIENV 452

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++  K     I +KV     +      R +L +++  ++ N + ++S+G  V +K   
Sbjct: 453 LTTVMPKADNKGIDLKVDVPVDITGIKGSRGQLERLYINLVDNGIKYTSEGGQVKIKVYE 512

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           D       + + G  IPE+    +F RF        R   G GLGLSIV+  +  H G +
Sbjct: 513 DEDRVWSEIIDTGMGIPEEDLPRIFERFYRVDKTRSRKLGGTGLGLSIVKHILERHNGGI 572

Query: 773 SISSSDEGVTTINCRIPSKE 792
            + S  E  T     +P  +
Sbjct: 573 EVESKVEEGTKFIFWLPKPK 592



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 17/137 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +K   ++ +      IL  +   +   D++  +   N +  E++++         + +  
Sbjct: 242 AKINEISGEKNKIEAILRGMGDGVIAVDEDGKIILLNPAAEEIFQLKEEKTLGKYTMEVT 301

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RG 410
                    +    N +   E I ++Y            P  + + V VT          
Sbjct: 302 RSHKLDDAIMASLKNGEDITEEIETIY------------PVERMIRVHVTPIKNDKTTER 349

Query: 411 GTIWMFENLTVQVDLET 427
           G + +  ++T    LE 
Sbjct: 350 GAVAVLRDVTELRRLEQ 366


>gi|269964754|ref|ZP_06178991.1| putative two-component sensor [Vibrio alginolyticus 40B]
 gi|269830414|gb|EEZ84636.1| putative two-component sensor [Vibrio alginolyticus 40B]
          Length = 632

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 145/299 (48%), Gaps = 24/299 (8%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--------------VRAERALTE 557
           + L   L+LLS +V ++    +P+  T+       +                  +  L  
Sbjct: 173 RLLVNPLQLLSGAVSDFRGGTVPSKVTLPKRWCFDEVSVLAEKYNRSVEKVKEHQTELEA 232

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +    A+  K+ F+  +S+E+R+P+  IIG + LL  +    L+ +Q ++VE I +SS
Sbjct: 233 ERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDT---DLDPQQKEFVEIIDSSS 289

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ +++DILD + V+AG ++L Y++  L +LL++V    + K  + N+++    D  L
Sbjct: 290 HSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQLLSDIDPHL 349

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPE 732
                 D  RL Q+ + +LSNA+ F+ +G   +L    +   +     F V ++G  I +
Sbjct: 350 PMEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGETAHIRFRVVDSGIGIAK 409

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  +++F RF        R   G GLGL+I    +NL GG + ++S     +     IP
Sbjct: 410 EHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQLTSELGLGSCFEFSIP 468


>gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 977

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/324 (25%), Positives = 146/324 (45%), Gaps = 17/324 (5%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537
            I N+A T SR     D      A   S D+  + + G  E+LS     +  ++   +  
Sbjct: 205 PITNLAQTMSRVTTNKDYS--IRAANESCDEIGQMIDGFNEMLSQIEAQDRELLKSRDTL 262

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                +   +  R    L    +A   A+  K+ F+ ++S+E+R+P+  ++G T+LL  +
Sbjct: 263 EDTVAIRTEELQRMVADLEVARDAANAANRAKSEFLANMSHEIRTPMNGVLGMTELLLGT 322

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN KQ Q+ E I  S   LL ++NDILD + ++AG ++L      +++LL +  + 
Sbjct: 323 L---LNGKQRQFAETIRNSGEALLAIINDILDFSKIEAGKIELEKIPFDMHELLCDAAEL 379

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            A+  H+  + + V     +    V D  RL Q+   + SNA+ F+ +G  VI     ++
Sbjct: 380 FASSAHQKGLELLVSIHPDVPRMVVGDPARLRQVVLNLASNAVKFTDQGEIVISADVAES 439

Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
           G       F V++ G  I  +  + +F  F         +  G GLGL+IV     L GG
Sbjct: 440 GQDNILIRFLVRDTGIGISPESLEKIFEGFAQADGSMTRRYGGTGLGLTIVRQLAGLMGG 499

Query: 771 HVSISSSDEGVTTINCR----IPS 790
              + S+ +  +  +      +P+
Sbjct: 500 TTRVESTPDVGSCFSFTARFDLPA 523


>gi|196231913|ref|ZP_03130769.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224035|gb|EDY18549.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 421

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 173/425 (40%), Gaps = 31/425 (7%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--GGTIWMFENLT-VQVDLET 427
           W  W+          +   +   L NG+     V  +    G   +  E +   Q  L  
Sbjct: 18  WWIWRRFAVDWRHLEQLLDE---LANGRKPGGFVFRHGGRFGRLTYPLEKIAQEQDKLHR 74

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           + +         +  + EGV V      ++L NP+F SL+  +            +  + 
Sbjct: 75  EIHDEAFNLRTILASMEEGVMVVDTHHNLRLVNPSFLSLFDLK---------CDPVGQSV 125

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R   E+   ++  A + +   +R  ++ T             +P+         V    
Sbjct: 126 LRTLRETAFEEIITAALRTGQPQRGDVERT---SDKRHFAVHAVPVKEFSGGPGIV---- 178

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                 A+      LR+ +E++  FV +VS+ELR+PL+   G+ + L  +        Q+
Sbjct: 179 ------AIIRDITRLRQLEEVRREFVANVSHELRTPLSIFHGYLENLLDAPSMP-RKDQT 231

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +  E +   S  L  L+ D+L LA +++   K+   ++ L  LL  +    + K+    +
Sbjct: 232 EIFEILRKHSRRLNALLEDLLTLARLESRQEKIACVSMKLPALLRSIGGDWSQKLANKKL 291

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +++ +   L    AD QRL Q+   +L NA+ ++  G  + L+AA  NG     V+++G
Sbjct: 292 ALQIEAHDDLPRISADPQRLEQVLHNLLENAVKYTEPGGNIFLRAAAQNGHVEVRVEDSG 351

Query: 728 SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +F RF         ++ G GLGLSIV+  I LHGG V+  S     TTI 
Sbjct: 352 QGIPPADLPHIFERFYRADKARSREQGGTGLGLSIVKHIIQLHGGTVAAESKYGKGTTII 411

Query: 786 CRIPS 790
             +P 
Sbjct: 412 LHLPL 416



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 91/285 (31%), Gaps = 47/285 (16%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             ++D+  +   IL ++   + + D +  L+  N SF+ L+++        P    +L  
Sbjct: 74  REIHDEAFNLRTILASMEEGVMVVDTHHNLRLVNPSFLSLFDLKCD-----PVGQSVLRT 128

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRG----GTI 413
           LR             ++E I +  ++ +  + D     + +   V            G +
Sbjct: 129 LRET----------AFEEIITAALRTGQPQRGDVERTSDKRHFAVHAVPVKEFSGGPGIV 178

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSE----GVAVFGPDGRIKLSNPAFRSLWKT 469
            +  ++T       +   L +V+ E + ++S      +++F              +L   
Sbjct: 179 AIIRDIT-------RLRQLEEVRREFVANVSHELRTPLSIFHGY---------LENLLDA 222

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---- 525
                   T I  I    SR  N      L  A + S  ++   +   L  L  S+    
Sbjct: 223 PSMPRKDQTEIFEILRKHSRRLNALLEDLLTLARLESRQEKIACVSMKLPALLRSIGGDW 282

Query: 526 ---LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
              L    + L             D  R E+ L    E   K  E
Sbjct: 283 SQKLANKKLALQIEAHDDLPRISADPQRLEQVLHNLLENAVKYTE 327



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 6/174 (3%)

Query: 155 IEGRVSGSCAF---LRILSLDGIYSELAETTLK-CKKLSNHISVFKVLFDSLDFLVWHRD 210
             GR  G   F    R   L     ++A+   K  +++ +     + +  S++  V   D
Sbjct: 39  ANGRKPGGFVFRHGGRFGRLTYPLEKIAQEQDKLHREIHDEAFNLRTILASMEEGVMVVD 98

Query: 211 QAGDILWANISYKKNTETE-GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
              ++   N S+    + +   V Q  +   R+   EEI    + +   ++   E  S  
Sbjct: 99  THHNLRLVNPSFLSLFDLKCDPVGQSVLRTLRETAFEEIITAALRTGQPQRGDVERTSDK 158

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND-QLTHTYEILHNLTVAIAIF 322
            H    +  +       G   I  D+++   + + +      + H L   ++IF
Sbjct: 159 RHFAVHAVPVKEFSGGPGIVAIIRDITRLRQLEEVRREFVANVSHELRTPLSIF 212


>gi|71908619|ref|YP_286206.1| PAS [Dechloromonas aromatica RCB]
 gi|71848240|gb|AAZ47736.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1560

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/567 (17%), Positives = 204/567 (35%), Gaps = 63/567 (11%)

Query: 265  TVSTLEHGNNKSY------KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
             V     G  +        +I          G + D+++      +L+   + L     A
Sbjct: 660  RVIRRNDGEVRWLHGAGQIEITANGRVARLFGTSQDITERKHFERRLSRNEKALKE-AQA 718

Query: 319  IAIFDQ------NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            IA          +  L   +     ++ +            + L  +   ++   Q +W 
Sbjct: 719  IANLGSWTLDILSDKLT-WSDEVYRIFGVAKD---QPLKLGDFLARIHPDDRDRVQADWN 774

Query: 373  TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---PRGGT----IWMFENLTVQVDL 425
                      + S  + +     + Q   V   ++      G     +   +++T + + 
Sbjct: 775  A-------ALQGSPYNSEHRITVDQQVRWVRERAHIRIDDEGRAAFAVGTVQDVTERHEA 827

Query: 426  ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE------------ENR 473
            E +   L       I+     + +     +I+  N AF                    + 
Sbjct: 828  EEQLRKL----SLAIEQTPHSIVITNTAAKIEYVNEAFVRNTGYSRSEAIGSNPSVLHSG 883

Query: 474  LSPGTHIRNIAATCSR---YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            ++PG     +  T  R   ++ E        +I   F       Q   ++     ++  I
Sbjct: 884  MTPGESYNELWQTLGRGEVWHGEFMNRRKDGSIYEEFAIISPVRQPDGKVTHYLAIKEDI 943

Query: 531  IPLPNAQT-MLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                  Q+ + ++    + + AER   L    +    A   K +F+ ++S+E+R+P+  I
Sbjct: 944  TEKKRIQSELNSYRQHLEQLVAERTEELNHAKDEAESASRAKTAFLANMSHEIRTPMNAI 1003

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            IG T L + S   + + +Q++ +  ++ ++  L++++ND+LD++ ++A  +KL  +   L
Sbjct: 1004 IGLTHLAQRS---TSDPEQNKRLGKVADAAHHLMSIINDVLDISKIEANKLKLENTDFSL 1060

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS 706
              L     + +  +     + +  I D  L      D  R+ QI    LSNA+ F+ +G 
Sbjct: 1061 AQLCTAACELVTQRADAKRLPVTCIIDPALPPVLCGDPLRIQQILLNFLSNAIKFTERGK 1120

Query: 707  T-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
              + ++A + +GD      +V + G  I  D  + +F  F        RR  G GLGL+I
Sbjct: 1121 IDIRVQALQKSGDGILIRCAVSDTGIGIASDAQRKLFVPFEQGDASTTRRYGGTGLGLAI 1180

Query: 761  VESFINLHGGHVSISSSDEGVTTINCR 787
                     G + + S     +T    
Sbjct: 1181 SRRLAEAMHGEIGVDSKLGQGSTFWFT 1207


>gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 777

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 120/243 (49%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A++ L +   A   A E K  F+ ++S+ELR+PL  IIG++++ +            Q +
Sbjct: 264 AQQELEQARTAAEAASEAKAQFLANMSHELRTPLNAIIGYSEMTQEDIAAGNTQSVQQDL 323

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I+ +   LL++VNDILD++ ++AG M L      +  LL++V   +   M +   + +
Sbjct: 324 EKINKAGLHLLSIVNDILDISKIEAGKMDLFLEDFDITQLLHDVVAIMTPLMEKQGNQFQ 383

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           ++    +G   AD+ ++ QI   +LSNA  F+ +G  + ++        + SV + G  +
Sbjct: 384 LVLSPDIGMMHADQTKVRQILINLLSNATKFTHQGE-ITVEVQNHGEHIVVSVHDTGIGM 442

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F  F        R   G GLGLSI + F ++ GG + + S+    +    ++
Sbjct: 443 DPEQVDRLFKAFTQADASTTRKYGGTGLGLSISQHFCHMMGGSIRVESTPGKGSHFTVQL 502

Query: 789 PSK 791
           P K
Sbjct: 503 PRK 505


>gi|260460489|ref|ZP_05808740.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259033594|gb|EEW34854.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 762

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 156/370 (42%), Gaps = 16/370 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     ID L + V     DG I  +N  F  L +T++  L+     + +A   
Sbjct: 119 EMQESEERFRGLIDALGDLVIHRDRDGYIVYANKVFADLVETDQRDLAG----KTLAELG 174

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                  D        ++S D   ++  G     S   L         A       ++T 
Sbjct: 175 IEVGIVPDAAFSDHECLSSTDVAIRTPSGP-RWFSWIELSVRDKDSGAASHRAIARDITA 233

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             RAE +L    E    A + K+ F+  VS+E+R+P+  I+G   LL  +   SL+ +Q 
Sbjct: 234 RKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLLADT---SLSPEQQ 290

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            YV  IS S++ LL L+ D+LD + ++AG        I + ++ + + + +A +    +I
Sbjct: 291 TYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPISVREIADNIIELLAARAFAKDI 350

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFS 722
            +    +  +   + AD  R+ Q+   ++ NA+ F+  G  V++  AR          F+
Sbjct: 351 GLGCHVEPDVPQMITADPGRVRQVLLNLIGNAIKFTDGGG-VLVSVARARTATTDRICFT 409

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G  + ++  + +F  F            G GLGL+I +  +   GG +S+SS    
Sbjct: 410 IADTGPGLRDEDMERIFEEFEQADGTSTRTHGGAGLGLAISKRLVAAMGGTISVSSRLGQ 469

Query: 781 VTTINCRIPS 790
            +     IP+
Sbjct: 470 GSEFVFEIPA 479



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 11/191 (5%)

Query: 140 SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI-YSELAETTLKCKKLSNHISVFKVL 198
           S  L+A      A+ +  R S     + +        +E+     +  ++      F+ L
Sbjct: 71  SLALLATGLAGLAMHLHARRSVHRTAVLLDETSARSRAEIETLADRMWEMQESEERFRGL 130

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            D+L  LV HRD+ G I++AN  +    ET+    +   G++      E+     ++ + 
Sbjct: 131 IDALGDLVIHRDRDGYIVYANKVFADLVETD---QRDLAGKTLAELGIEVGIVPDAAFSD 187

Query: 259 EKNFCET-VSTLEHGNNKSY---KIVRVLNSFGEA---GIAIDVSKEITVNDQLTHTYEI 311
            +    T V+       + +   ++       G A    IA D++        L    E 
Sbjct: 188 HECLSSTDVAIRTPSGPRWFSWIELSVRDKDSGAASHRAIARDITARKRAESSLITARER 247

Query: 312 LHNLTVAIAIF 322
               + A + F
Sbjct: 248 AEYASQAKSRF 258



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 21/175 (12%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-------ILHNLTVAIAIFDQNR 326
            +S     VL        A   ++  T+ D++    E       ++  L   +   D++ 
Sbjct: 89  RRSVHRTAVLLDETS---ARSRAEIETLADRMWEMQESEERFRGLIDALGDLVIHRDRDG 145

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL--NWKTWKENIFSVYKS 384
           Y+ + N+ F +L E D   LA       L E       +P+    + +       ++   
Sbjct: 146 YIVYANKVFADLVETDQRDLAGK----TLAELGIEVGIVPDAAFSDHECLSSTDVAIRTP 201

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           S     +W       L V    +       +  ++T +   E+   T  +     
Sbjct: 202 SGPRWFSW-----IELSVRDKDSGAASHRAIARDITARKRAESSLITARERAEYA 251


>gi|86147779|ref|ZP_01066086.1| probable composite two component regulatory (sensor histidine kinase
            and response regulator hybrid) transcription regulator
            [Vibrio sp. MED222]
 gi|85834417|gb|EAQ52568.1| probable composite two component regulatory (sensor histidine kinase
            and response regulator hybrid) transcription regulator
            [Vibrio sp. MED222]
          Length = 1430

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 103/515 (20%), Positives = 211/515 (40%), Gaps = 50/515 (9%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--------AFLATN 349
            E  +  Q+     +L  +   I + + +  +   N +  +L   +L        +   T 
Sbjct: 542  ESALKHQVEFERSLLDAMPFPIVVRNLDNQIISLNSAAQQLTGFELIEGTIVNNSDEDTM 601

Query: 350  PSNDELLEFLRSANKLPEQ-LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
              +  +L  L      P+   ++  WK                 ++ NG           
Sbjct: 602  IHHGVVLPRLEKEVVSPQGSKHYAYWKCP---------------YISNGNI--------- 637

Query: 409  RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
              G++ + ++LT   + +    +      +  ++L  G  +     +  L +  F  +  
Sbjct: 638  -EGSVTILDDLTELYEAKKIAKSADDRVQKLANNLH-GAVIQHIQPKRSLHDIEFVFISN 695

Query: 469  TEENRLS-PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-- 525
              E  L      +R    +     N  D   L   + +   + + SL   + + + +   
Sbjct: 696  GVEELLGLTPAQLRRSPISFFAPLNAQDRRTLIKKVRSGNKEGKLSLDIGVNIDNQNRWL 755

Query: 526  -LEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             L+  I  L +     +   ++T+  + +  LT+  ++   A E K+ F+ ++S+E+R+P
Sbjct: 756  NLQSKISDLGDYYEWDSVLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTP 815

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I+   +L +  ++G    +  +    +S S+  LL++VNDILD + ++AG + L+Y 
Sbjct: 816  LGGIVSLLELSEQYEVGY---EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQ 872

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
               L+ L   V Q  A + H   ++ K   D +L   V  D  R+ Q+ + +LSNA+ F+
Sbjct: 873  PASLDTLTLRVTQLQARQAHAKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFT 932

Query: 703  SKGST----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
              G+      +L    +     F V ++G  I E+  +++F  FV        +  G GL
Sbjct: 933  EYGTVGLAAKLLDLDGEQQQICFEVFDSGIGISEEHIRNLFQPFVQADEGTTRKYGGSGL 992

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GL+I +  I   GG ++++S     +T +  +P K
Sbjct: 993  GLTISKQLIEQMGGSLNVTSKINIGSTFSITLPLK 1027



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 92/282 (32%), Gaps = 32/282 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ +       L + +   + L D++ F +  R+    I+  N + ++ T  E I  
Sbjct: 531 LRREVEDRKRTESALKHQVEFERSLLDAMPFPIVVRNLDNQIISLNSAAQQLTGFELIEG 590

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF---GEAG 290
                    +     +  MI    +     + V + +   + +Y     +++    G   
Sbjct: 591 --------TIVNNSDEDTMIHHGVVLPRLEKEVVSPQGSKHYAYWKCPYISNGNIEGSVT 642

Query: 291 IAIDVSKEITVNDQLT----HTYEILHNLTVAIAIF-DQNRYL-----QFHNRSFVELWE 340
           I  D+++                ++ +NL  A+       R L      F +    EL  
Sbjct: 643 ILDDLTELYEAKKIAKSADDRVQKLANNLHGAVIQHIQPKRSLHDIEFVFISNGVEELLG 702

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQ 398
           +  A L  +P        L +        + +T  + + S  K  +   D     +   +
Sbjct: 703 LTPAQLRRSPI--SFFAPLNAQ-------DRRTLIKKVRSGNKEGKLSLDIGVNIDNQNR 753

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            L++    +  G        LT   +L+ +   L + +   I
Sbjct: 754 WLNLQSKISDLGDYYEWDSVLTDITELKQQQEELTQARQSAI 795


>gi|298241549|ref|ZP_06965356.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554603|gb|EFH88467.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 978

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/767 (16%), Positives = 270/767 (35%), Gaps = 80/767 (10%)

Query: 65  ICDQLSKY-HSLLTENNCLTIVWDGKDETP-----EIIGQLHQRIDIPQTDTDLLSFENW 118
              Q  +  H+L+       +VW  + +       + +                L+    
Sbjct: 249 ARKQADEAIHTLIDAIPQ--LVWIARPDGSITYNNQRLIDYLAMTLEQVEGAGWLA---G 303

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQND-----CAIKIEGRVSGSCAFLRILSLDG 173
           +      ++ +A +   + G  +++    Q+          + G    + A   IL   G
Sbjct: 304 VHSDDRHRVWEAWQTAIQTGVPYEVEQRLQDGTSGAYRWFLVRGVPQRN-AQGTILHWVG 362

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
             +++ E     ++L+     ++VL +++  LVW     G + + N    ++ E     F
Sbjct: 363 TCTDIDEQKRVEQQLNESRENWRVLAETVPQLVWTSLPDGFVTYFNQ---RSFEYTHAAF 419

Query: 234 QKAIGES-RKLFKEEIKKRMIS------SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
           ++  G    +    E  +R+++      ++         V   + G  + +    +    
Sbjct: 420 EQLQGYGWYQFVHPEDAERLVALRRHAFATGETYEVANRVRNGQTGAYRWFLTRAMPVRD 479

Query: 287 G------EAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFV 336
           G        G   D+  +     +L  + E        L   +     +  L + N+   
Sbjct: 480 GIGQIVKWVGTCTDIEDQKQAEQKLKESRENFRVLAETLPHLVWTMQPDGRLDYVNQRAC 539

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           +       ++      DE  +F+          +++  +       ++ E ++  + L +
Sbjct: 540 DYIGASPEYMLG----DEWWQFVH-------PDDYERIQALRRHSRETGEPYEIEYRLKD 588

Query: 397 G----------QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           G          +TL V   +      +    ++  Q  +E       +     ++    G
Sbjct: 589 GQTGAYRWFLGRTLPVRDDTGQIIKWLGTSTDIEGQKRIEESLRQSQERVSVLMNSTMIG 648

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           + +   + +I  +N  F  +       L  G           R          + A    
Sbjct: 649 INIIEKE-QIVDANDTFLRMTGYTCEDLRAG-----------RMNWMRMTPPEYLARTRQ 696

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
              E  + Q           + S +P+     ++  V +    R   A    N A ++ D
Sbjct: 697 VHQELATQQSVTYEKEYICKDGSRLPV-----VVCGVVLKHHPRQAIAFVLDNSARKELD 751

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+   S+ELR+PLT +   T LL            +  +  +      +  LV +
Sbjct: 752 QRKDAFISMASHELRNPLTALKLQTSLLHRQLARQGIPASAPALSSMETQINTVTRLVEE 811

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            LD++   AG ++     + L++LL E+  ++      + I ++        S +ADR R
Sbjct: 812 WLDVSKFQAGRLEYVRERVNLDELLREIVDTMQQTHPSHRILLR---GAVQTSLMADRDR 868

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+F+ +LSNA+ +S    TV +  +         V ++G  IP +    +F RF   +
Sbjct: 869 LGQVFTNLLSNAIKYSPGAETVEMDLSTSEETVTVRVCDHGLGIPREQRDKIFERFYRAS 928

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              Q+   G+G+GL IV   +  H G +++ S+    +T    +P K
Sbjct: 929 GPRQKAIPGLGMGLYIVAEIVKRHRGTITVDSTVGKGSTFTVTLPKK 975



 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 68/491 (13%), Positives = 140/491 (28%), Gaps = 75/491 (15%)

Query: 113 LSFENWLKFHHYIK--LSKATEKLRKEGQS--FDLVAETQNDCAIKIEGRVS---GSCAF 165
           L+   W  F    +  L  A  +    G++  F+++   +    +  EG ++    +   
Sbjct: 178 LAEAPWWSFAPASQEWLRAAIARA-STGETVHFEVLLRPRGGIVLSFEGTITPHMDADHH 236

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           +  L + GI                       L D++  LVW     G I + N    + 
Sbjct: 237 VEYLVIAGI---------DITARKQADEAIHTLIDAIPQLVWIARPDGSITYNNQ---RL 284

Query: 226 TETEGIVFQKAIGES-RKLFKEEIKKRMISS------SALEKNFCETVSTLEHGNNKSYK 278
            +   +  ++  G         + + R+  +      + +     + +     G  + + 
Sbjct: 285 IDYLAMTLEQVEGAGWLAGVHSDDRHRVWEAWQTAIQTGVPYEVEQRLQDGTSGAYRWFL 344

Query: 279 IVRVLNSFGE------AGIAIDVSKEITVNDQLTHTYE---ILH---------NLTVAIA 320
           +  V     +       G   D+ ++  V  QL  + E   +L          +L     
Sbjct: 345 VRGVPQRNAQGTILHWVGTCTDIDEQKRVEQQLNESRENWRVLAETVPQLVWTSLPDGFV 404

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
            +   R  ++ + +F +L          +P + E L  LR                    
Sbjct: 405 TYFNQRSFEYTHAAFEQLQGYGWYQF-VHPEDAERLVALRRH------------------ 445

Query: 381 VYKSSETHKDTWHLPNGQT---LHVIVTSNP-RGGT------IWMFENLTVQVDLETKYN 430
            + + ET++    + NGQT      +  + P R G       +    ++  Q   E K  
Sbjct: 446 AFATGETYEVANRVRNGQTGAYRWFLTRAMPVRDGIGQIVKWVGTCTDIEDQKQAEQKLK 505

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +      + L   V    PDGR+   N             +      + +       
Sbjct: 506 ESRENFRVLAETLPHLVWTMQPDGRLDYVNQRACDYIGASPEYMLGDEWWQFVHPDDYER 565

Query: 491 YNESDGWDLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                            +   K  Q G         L          + + T  ++    
Sbjct: 566 IQALRRHSRETGEPYEIEYRLKDGQTGAYRWFLGRTLPVRDDTGQIIKWLGTSTDIEGQK 625

Query: 550 RAERALTEKNE 560
           R E +L +  E
Sbjct: 626 RIEESLRQSQE 636


>gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 808

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 15/291 (5%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
              ++E + L   LE     V++ +   +  A       ++ +  + E  L    EA   
Sbjct: 362 KRAEEEVRRLNQHLE---SRVMDRTA--MLKAANRKLEEDILERKKIEEDLRRSKEAAEA 416

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K+ F+ ++S+E+R+PL  +IG T +L  +    LN +Q  ++E I +S   LL ++
Sbjct: 417 ATNAKSEFLANMSHEIRTPLNAVIGLTGILLGT---DLNREQRDHMEIIRSSGDALLAII 473

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
           NDILD + +D+G M+L      +   + +    +A    E  + +    +  +  + V+D
Sbjct: 474 NDILDFSKIDSGKMELEVQPFDVKKSIEDAVDLMAPVAQEKGLTLGYDIEESIPKTIVSD 533

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVF 739
             RL QI   IL NA+ F+S G   IL + RD      +  F+V + G  IP +    +F
Sbjct: 534 PTRLRQILVNILGNAVKFTSSGEVRILVSGRDLGGREHEIHFAVMDTGIGIPAEKMNCLF 593

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F         +  G GLGL+I +  + L  G +   S +   +T +  I
Sbjct: 594 QSFCQVEPCTTRRYGGAGLGLAISKRLVELMDGSIWAESEEGKGSTFHFTI 644


>gi|309789502|ref|ZP_07684085.1| sensory transduction histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308228468|gb|EFO82113.1| sensory transduction histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 528

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/494 (18%), Positives = 197/494 (39%), Gaps = 27/494 (5%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               IL+N    I +   +    F N     ++++           +E++         P
Sbjct: 48  QLLTILNNFASGILLISVDGRFLFVNPRAAAMFDLHP---------EEMIGRYVEEILPP 98

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHV---IVTSNPRGGTIWMFENLTVQ 422
           E       +       + +  ++ ++ LP + +TL +   I+ ++     +    +++ +
Sbjct: 99  EIAQVYQERTRELFALQITHEYERSFTLPLSERTLFISNQILATSQGDALLSSLVDISTR 158

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             +E +    +       D +  G+ V    G+I  SN     L    +        I  
Sbjct: 159 TRVEAELRVALTKYRTLFDAMPLGITVSDHTGQIVESNAMAERLLGIGKEE-HHHRQIDG 217

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI------IPLPNA 536
           +     R    +   + FA+ + +  + R      + +++   +   I      +PL + 
Sbjct: 218 VEWRIVRPDGSTMPPEEFAS-VRALKEHRLIENVEMGIVTPDGITTWINVTAAPLPLEDY 276

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             ++ + +++  + AE+AL +  + L +++     F    S++L+ PL  +IG   LL  
Sbjct: 277 GVVIAYNDISSRMAAEQALHQTMKELTRSNADLEQFAYVASHDLQEPLRGVIGMLQLLHE 336

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L+S+  QY+     S+  +  L+ND+L  + V+       ++ +     L     
Sbjct: 337 RYQGRLDSRADQYIALAIDSANRMQALINDLLLFSRVERRNQI--FTQMDAAAALEHAMA 394

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARD 715
           ++   + E+   I       L    AD  ++ Q+F  +LSNA+ F  +    + + A R 
Sbjct: 395 NLQVVIQESGAEITYD---PLPQIYADSTQITQLFQNLLSNAIKFRDEAPPRIHISAQRR 451

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +  ++F+V++NG  I  D  + +F  F     R    G G+GL+I +  +  HGG + ++
Sbjct: 452 SNAWVFAVRDNGIGIAPDHVERIFIIFQRLHPRQAYPGTGIGLAICKKIVERHGGQIWVN 511

Query: 776 SSDEGVTTINCRIP 789
           S      T    IP
Sbjct: 512 SHLGHGATFFFTIP 525


>gi|297545524|ref|YP_003677826.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843299|gb|ADH61815.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 470

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 125/274 (45%), Gaps = 2/274 (0%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + L +  L    +   N    +      +     ++     + L + ++++  FV +VS+
Sbjct: 198 QPLKEMSLAVQQLAKGNFSARVQHREEDEIGELAKSFNVMAKELEQLEDMRKDFVANVSH 257

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELRSPLT+I G+ D +    +     K   Y++ +   +  +  L++D L++  +++G  
Sbjct: 258 ELRSPLTSIQGYIDGILDGTIPV--EKACDYLKIVQKETRRMSRLIDDFLEMTKLESGQF 315

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+ +   +N+L+         ++ E ++ +KV  +      +AD+ ++ Q+ S ++ NA
Sbjct: 316 PLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIADKDKIEQVLSNLIDNA 375

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + FS +   + +     +     ++K+NG  I  +  + +++RF        + G GLGL
Sbjct: 376 IKFSKEKGIIHIFTETKDDKVFITIKDNGIGISPEDQEHIWDRFYKADKSRGKDGAGLGL 435

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            IV+  IN H   + + S           +P K+
Sbjct: 436 YIVKRIINAHNEEIWVESKIGRGAAFTFTLPVKK 469


>gi|113475126|ref|YP_721187.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
 gi|110166174|gb|ABG50714.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
          Length = 853

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 148/295 (50%), Gaps = 13/295 (4%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           DDE++ L+   E L+ ++ +  +      Q       V + ++    L +  ++   A+ 
Sbjct: 420 DDEKRFLEEIAEHLAIAIYQAQLYGELQKQKQTLEKRVVERIQ---DLYDAVQSAESANR 476

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK------QSQYVEYISASSTILL 621
            K+ F+  +S+ELR+PLT +IG +  L     G+  +K      Q  Y++ I  S   LL
Sbjct: 477 AKSEFLATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLL 536

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKLGS 679
            L+NDILDL+ V+AG   L  S   L+ +  E+ Q+   K  +N +++      + +L  
Sbjct: 537 ELINDILDLSQVEAGKTVLKISEFSLSKISYELLQNFREKAEQNEVKLIFEPTVNPQLDL 596

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F AD++R+ QI   +LSN + F+  G +V LK  R     IF V++ G  I ++    +F
Sbjct: 597 FAADQRRVKQILFNLLSNGIKFTPNGGSVRLKVMRYKNTAIFQVEDTGMGISQEQKPLLF 656

Query: 740 NRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F         Q+ G GLGL++ +  + LH G + + S+    +T   ++P+++
Sbjct: 657 KKFQQLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVGSTFTVKLPAQQ 711


>gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
          Length = 464

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 134/267 (50%), Gaps = 7/267 (2%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             I   N  T +   +  +     RA+ +   +L++ +E +  F  ++S+ELR+P+T + 
Sbjct: 197 RQIARGNYNTRIIQKSGDELGSLARAINDLAFSLQRVNEQRREFFANISHELRTPMTYLK 256

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++ +L+  +  +   +++QY+E I   +T L  LV+D+ DLA ++ G   L +  + +N
Sbjct: 257 GYSKVLREGRWKT-EEERNQYLEIIDHEATRLTYLVDDLFDLAQMEEGRFNLEHKKVNIN 315

Query: 649 DLLNEVKQSIATKMHENNIRIKV---ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           +++  V +  A K  E N++I+    +SD      + D  RL Q+   ++ NA+ ++ +G
Sbjct: 316 EIIKLVVKKTAYKALEQNLKIEYRGGLSDKDDSIVLGDPLRLEQVLINLVENAIKYTKEG 375

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
           S + +    ++ +    V++ G  + E+    +F RF        R   G GLGLSIV+ 
Sbjct: 376 S-ITIYTVSNDENIKIKVRDTGIGMEEEELPYIFERFYRVEKSRSRAFGGTGLGLSIVKQ 434

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            I LH G + + S+    T     +P 
Sbjct: 435 LIELHNGTIEVESTVGEGTEFTIILPK 461


>gi|218259890|ref|ZP_03475422.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224855|gb|EEC97505.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
          Length = 475

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/491 (21%), Positives = 203/491 (41%), Gaps = 36/491 (7%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           N+ V I ++D+N YL        ++  +D+           L   +     +PE++  K 
Sbjct: 3   NIPVGIELYDKNGYLV-------DMNNMDVEIFGLPSKEAALGINIFENPIIPEEIREKL 55

Query: 374 WKENI--FSVYKSSETHKDTWHLPNGQ--TLHVIVTSN---PRGGTIWMFENL-TVQVDL 425
            +     F +  S    KD  + P G+   L ++   +      G +  +  +     D 
Sbjct: 56  SRRESVSFRLDYSFNKIKDEDYYPTGKKGALDILTKVSMLYDTNGDLINYMLINLDNTDK 115

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---SNPAFRSLWKTEENRLSPGTHIRN 482
              YN + +      +H    V+ F   G  K    SN  +      +      GT +  
Sbjct: 116 TVAYNRIEE-----FEHFFSLVSRFAKVGYAKFDLQSNEGYAIDQWYQNLGEVEGTPLSE 170

Query: 483 IAATCSRYYNESD--GWDLFAAIITSFDDERK---SLQGTLELLSDSVLEYSIIPLPNAQ 537
           +       + E      D F  +        +    +Q   E     V         +  
Sbjct: 171 VIGVYDHVHPEDRKVMVDFFENVRQGTASSIRKELRIQNGDEWRWTRVNIMRNTQSTDPD 230

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +       D     +   ++ E   + D +K++F+ ++S+E+R+PL  I+GF+ LL  +
Sbjct: 231 RLEMICVNYDITEL-KETQKQREKAEELDRLKSAFLANMSHEIRTPLNAIVGFSTLLVDT 289

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  ++ Q+VE I  ++ +LL L++D+LDLA +++GI++L    + L +L  E+  S
Sbjct: 290 ---DDPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVS 346

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  K+    + + V  D        D+ RL QI S  ++NA+  +SKG T++L       
Sbjct: 347 MRIKVPA-EVALCVAPDLPSYIMRCDKVRLTQIISNFINNAIKHTSKG-TIVLGYEVRQD 404

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  FSV + G  +  ++ + VF+RF        ++G GLGLSI +S I   GG + + S 
Sbjct: 405 EIEFSVTDTGDGMSPEVQQHVFDRFYKGNSF--KQGTGLGLSICKSIIEQVGGKIGVESE 462

Query: 778 DEGVTTINCRI 788
           +   +     +
Sbjct: 463 EGKGSRFWFTL 473


>gi|20260804|gb|AAK54092.2|AF362373_1 histidine kinase DhkL [Dictyostelium discoideum]
          Length = 1709

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/363 (24%), Positives = 168/363 (46%), Gaps = 29/363 (7%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            I++  + V ++ P G I+  N AF  +       L               + N  D  ++
Sbjct: 708  IENSPDCVEIWDPSGHIQYLNLAFSEMTGFARWEL-----------LGKEFSNLIDNTEI 756

Query: 500  FAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
               +  +  D +K+  G +    ++      E SI P+ +    + + N T     ++ +
Sbjct: 757  IPNMWATLTD-KKTWNGFIRTRHNNNTLIYFEASISPVLDQFQQILYYNCTKRDVTQKRI 815

Query: 556  TEKNEALRKADEI-KNSF-VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             E+++ L +   I K+   +  +S+++R+P++NIIG  DLL  +   SL+  Q  Y+E I
Sbjct: 816  DEESKTLEQNKIIEKSRLRLSMMSHDIRTPMSNIIGMADLLLDT---SLSQHQHHYLEII 872

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              SS  LL ++NDILD++ ++AG + ++Y +   N  +++V +S+A ++    + +    
Sbjct: 873  KNSSNTLLTIINDILDISKIEAGKLDIDYESFDFNATVSQVVESMAQRVQSKGLELLSYV 932

Query: 674  DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
            D K+ +  +    RL QI + +L N++ F+ KG   I     D  D        V++ G 
Sbjct: 933  DPKIPNILIGPSSRLNQILTNLLGNSLKFTDKGEISICCLLNDETDSEYEIKVDVRDTGI 992

Query: 729  SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL-HGGHVSISSSDEGVTTIN 785
             I ++    +F  F         Q  G GLGL+I +  ++L   G +S+ S     +T  
Sbjct: 993  GIKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVHLAFNGEISVESQYGHGSTFT 1052

Query: 786  CRI 788
            C +
Sbjct: 1053 CIL 1055


>gi|283780478|ref|YP_003371233.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283438931|gb|ADB17373.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 636

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 10/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L + N  L + + +K  F+ ++S+ELR+PL +IIGF+++L    + SL  KQ +Y + I
Sbjct: 348 QLAQLNMRLHEMNRLKGEFLANMSHELRTPLNSIIGFSEVLA--GIDSLTDKQKRYAQNI 405

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL ++NDILDLA ++AG M +  S   ++ +L+     + +   + NI + +  
Sbjct: 406 QKSGRSLLEMINDILDLAKLEAGKMDVRLSEFRIDSILSAHCDMVRSLTEDKNIDLVLDI 465

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPE 732
           +  L +   D+ +L QI + +LSNA+ F+ +G  + + A  D+ G     V + G  I +
Sbjct: 466 ENDLPALYQDQAKLQQILTNLLSNAIKFTPEGGRITVGAKGDSRGFIEMYVSDTGVGIAD 525

Query: 733 DMCKSVFNRFVSNAH-------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              + +F +F              +  G GLGLSIV+    L GG VS+ S     +T  
Sbjct: 526 ADKEIIFEKFRQGTAVLGRDNLTREYSGTGLGLSIVKELCKLLGGEVSVESELGRGSTFR 585

Query: 786 CRIP 789
             IP
Sbjct: 586 VTIP 589


>gi|253682114|ref|ZP_04862911.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253561826|gb|EES91278.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 551

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/510 (15%), Positives = 208/510 (40%), Gaps = 28/510 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW-EIDLAFLATNPSND---- 353
             ++        ++  L  A+  F++++ + F N   ++L   I+ + +     ++    
Sbjct: 13  EFIHGDEEFYKNLIRILPEAVF-FEKDKKIIFANDEGIKLLEGIERSDIIGKKIDEFIYS 71

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
             ++ L    +     + +   E       +     +   +        +   N     +
Sbjct: 72  NFIKILDLNKEKKLNSDNENVIEQKIITLNNKVIDVEVKSI-------YLFNKNREKIKV 124

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  ++T +   E        +  +  + L  GV++   D  ++ +N    ++   ++ +
Sbjct: 125 VIVRDITERKRYEKALCESEYLHRKLTELLPVGVSIHNYDM-VEFANKTCLNMLGIKDEK 183

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIP 532
                 I           ++     +F     +  +   K ++   +++       +   
Sbjct: 184 DLINNSIFKFIHESKIKDSKERLKTIFEYGGKTLPEFYNKFIRKDGQIIDVETWSTTFYD 243

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEA------LRKADEIKNSFVQHVSYELRSPLTN 586
               + +  F +VT+ ++ E+   + NE        R+ ++I+  F  ++S+EL++PL  
Sbjct: 244 ENKLKILSVFRDVTEYLQIEKIKQKSNENKKLLDKEREFNKIRTEFFANLSHELKTPLNV 303

Query: 587 IIGFTDLL----KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           I+    LL    +  +   ++  K  ++++ +  +S  LL L+++++D+  +D+G   LN
Sbjct: 304 ILSSQQLLALYLRNGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLN 363

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +  ++ ++  ++   +   +I++   +D +    + D  ++ +I   +LSNA+ F
Sbjct: 364 LENHNIVTIIEDITLAVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKF 423

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           + KG  + +    D      +V++NG  IP+D    +F+RF        R   G G+GLS
Sbjct: 424 TPKGGKIKVNIHDDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDKSFTRISEGSGIGLS 483

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +V++ I +H G +S+ S     +      P
Sbjct: 484 LVKALIEMHNGTISVESEYGKGSEFIIYFP 513


>gi|91222987|ref|ZP_01258253.1| putative two-component sensor [Vibrio alginolyticus 12G01]
 gi|91191800|gb|EAS78063.1| putative two-component sensor [Vibrio alginolyticus 12G01]
          Length = 632

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 145/299 (48%), Gaps = 24/299 (8%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--------------VRAERALTE 557
           + L   L+LLS +V ++    +P+  T+       +                  +  L  
Sbjct: 173 RLLVNPLQLLSGAVSDFRGGTVPSKVTLPKRWCFDEVSVLAEKYNRSVEKVKEHQTELEA 232

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +    A+  K+ F+  +S+E+R+P+  IIG + LL  +    L+ +Q ++VE I +SS
Sbjct: 233 ERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDT---DLDPQQKEFVEIIDSSS 289

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ +++DILD + V+AG ++L Y++  L +LL++V    + K  + N+++    D  L
Sbjct: 290 HSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQLLSNIDPHL 349

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPE 732
                 D  RL Q+ + +LSNA+ F+ +G   +L    +   +     F V ++G  I +
Sbjct: 350 PIEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGETAHIRFRVVDSGIGIAK 409

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  +++F RF        R   G GLGL+I    +NL GG + ++S     +     IP
Sbjct: 410 EHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQLTSELGLGSCFEFSIP 468


>gi|313632600|gb|EFR99590.1| sensor histidine kinase ResE [Listeria seeligeri FSL N1-067]
          Length = 596

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 166/402 (41%), Gaps = 36/402 (8%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSIDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +    A  +   +  +  +     IT             
Sbjct: 281 SNPPAEEFLHNWFFSPENAEKVLIPVALDNLLNDTLEAKESQVGEIT------------- 327

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +D      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 328 --FADRTYVAILTLLYTGEHVRSIVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  RL Q+   ++ NA
Sbjct: 435 QMDNQKLPLAPLLEKVMANFDVLAKENFVELGLELETPNLEYSYDPDRLEQVLINLIMNA 494

Query: 699 MDFS-SKG--STVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  +  +G    V+LK      N   I +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYKGKVVLKQTIDETNNKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G G+GL+IV++ +  H G +S+ S     +     +P ++
Sbjct: 555 AVGTGIGLAIVKNIVEAHDGKISVKSELGKGSDFIITLPLEK 596


>gi|307267066|ref|ZP_07548579.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917897|gb|EFN48158.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 456

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 148/364 (40%), Gaps = 22/364 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N         +  +  GV  F  + +I L N A R +   +E  L  G HI  +   
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDDNEKILLINDAARKILNIKEKDL-IGRHILEVVR- 162

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  S   DLF  +  + +   +SL+  +      V    I+   + Q +   + + 
Sbjct: 163 ------NSKLHDLFEDVKKNKNSSSRSLELNVFNKHLKVYTSPILHPISHQNLGFVLIID 216

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     R            ++I++ FV +VS+ELR+PLT+I GF + L+   + +    +
Sbjct: 217 DITEMRRL-----------EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIEN-PEAR 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++ I   S  L  L+NDIL L+ ++          I L++ + ++   +       N
Sbjct: 265 DKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKN 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +K   +        ++ R  Q+   ++ N + ++ +G  V +    +    I  V++N
Sbjct: 325 ITLKKDLNCTDLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVEDN 384

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F RF        R   G GLGL+IV+  +    G + + S     T  
Sbjct: 385 GIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVEYMKGEIFVESEVGRGTKF 444

Query: 785 NCRI 788
             + 
Sbjct: 445 IIKF 448



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 23/227 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +ND+      IL ++   +  FD N  +   N +  ++  I    L        +LE 
Sbjct: 105 EELNDRNAKLEAILKSIVNGVIAFDDNEKILLINDAARKILNIKEKDLIGRH----ILEV 160

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +R++        ++  K+N  S  +S E +    HL    +  +   S+   G + + ++
Sbjct: 161 VRNSKL---HDLFEDVKKNKNSSSRSLELNVFNKHLKVYTSPILHPISHQNLGFVLIIDD 217

Query: 419 LTVQVDLETKYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +T    LE   +  V          +  +  G      +G I+  NP  R          
Sbjct: 218 ITEMRRLEKIRSEFVANVSHELRTPLTSIR-GFIETLRNGAIE--NPEARD--------- 265

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                I   +   +R  N+         +   +  E   L   +E +
Sbjct: 266 KFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDI 312


>gi|225628039|ref|ZP_03786075.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|254702323|ref|ZP_05164151.1| sensory box histidine kinase [Brucella suis bv. 5 str. 513]
 gi|254710637|ref|ZP_05172448.1| sensory box histidine kinase [Brucella pinnipedialis B2/94]
 gi|256032130|ref|ZP_05445744.1| sensory box histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|256160326|ref|ZP_05458020.1| sensory box histidine kinase [Brucella ceti M490/95/1]
 gi|256255531|ref|ZP_05461067.1| sensory box histidine kinase [Brucella ceti B1/94]
 gi|256370019|ref|YP_003107530.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260169265|ref|ZP_05756076.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261222740|ref|ZP_05937021.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            B1/94]
 gi|261318208|ref|ZP_05957405.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis B2/94]
 gi|261752887|ref|ZP_05996596.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 5 str. 513]
 gi|261758777|ref|ZP_06002486.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|265989241|ref|ZP_06101798.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M292/94/1]
 gi|265998702|ref|ZP_06111259.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M490/95/1]
 gi|225617202|gb|EEH14248.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|256000182|gb|ACU48581.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260921324|gb|EEX87977.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            B1/94]
 gi|261297431|gb|EEY00928.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis B2/94]
 gi|261738761|gb|EEY26757.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261742640|gb|EEY30566.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 5 str. 513]
 gi|262553326|gb|EEZ09160.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M490/95/1]
 gi|264661438|gb|EEZ31699.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M292/94/1]
          Length = 1035

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
          Length = 1268

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 163/384 (42%), Gaps = 26/384 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRLSPGTHIRNI 483
             + + +  +Q   +      +     +G I   NPA   L      E        I ++
Sbjct: 378 TAEISRVNILQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHL 437

Query: 484 AATCSRYY---------NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            A    +          N + G++   A       +        +      ++ ++  L 
Sbjct: 438 PAEVEHHAAKLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALK 497

Query: 535 NAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + Q      +    ++T  ++ E  L +  E    A++ K+ F+ ++S+E+R+P+  ++G
Sbjct: 498 DEQGQLAGFLGIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLG 557

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              L+  S   +L+ +Q+ Y+E   +++  LL L+NDILD + ++AG ++L+     L D
Sbjct: 558 LLQLVANS---TLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTD 614

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST- 707
           LL ++    ++   +  + +       +    + D  R+ Q+   ++ NA+ F+ KG   
Sbjct: 615 LLQDIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEIL 674

Query: 708 VILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           + +++        +  FS+K+ G  I  +   ++F+ F         +  G GLGL+I +
Sbjct: 675 ISIRSQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISK 734

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             +NL GG + + S     +T + 
Sbjct: 735 RLVNLMGGEIGVESEFGCGSTFSF 758


>gi|238897326|ref|YP_002923003.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA, regulates multidrug resistance [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465081|gb|ACQ66855.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA, regulates multidrug resistance [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 1209

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 177/395 (44%), Gaps = 21/395 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             ++   +  +  ++ K    V ++   ++ +   V V   DG I   N A+   ++ ++
Sbjct: 553 IYYLRREILSRHTIQLKLQEEVTLRETLLNSIPVPVYVVDRDGYIINRNQAWNVFFEQKK 612

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L+    + + +   S  Y          +I  +   +R ++   LE   + ++ +  +
Sbjct: 613 MDLTE-FPLSSFSHPLSAVYPSLQNIFKNPSIEKTVSAQRYTVNNGLE---NRIILHQAV 668

Query: 532 PLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           P  +     A  + ++ ++T      + L+   E   +A+  K++F+  +S+E+R+P++ 
Sbjct: 669 PFIDRTGQPAGLICSWQDMTLYENLLKILSITRERAEQANRAKSTFLATMSHEIRTPISA 728

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG  +L+ TSK   ++  +  YV Y   S+  LL L+ DILD+A +++G ++LN + + 
Sbjct: 729 IIGLLELVVTSKEHVVSDDEPIYVAY--QSAQSLLGLIGDILDMAKIESGKLELNPAWVS 786

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            ++L+  V +       + N+R+      G       D  R  Q+ S +LSNA+ F+  G
Sbjct: 787 FHELILPVVKVFDGLARQKNLRLSCEIKTGHPDEVYIDPMRFRQVLSNLLSNAIKFTEIG 846

Query: 706 ST-VILKAARDNG--------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           S  V++K                   VK+ G  I +   K VF  +  +    ++ G GL
Sbjct: 847 SVDVLVKCISKKEPLETHQIQRLEVKVKDTGVGISQADQKLVFQPYSQSDFGKKQSGTGL 906

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI    + +  G + ++S     T +   +P +
Sbjct: 907 GLSICLQLMQMMNGSIKLNSELHQGTCVELSVPIQ 941


>gi|261420882|ref|YP_003254564.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319768553|ref|YP_004134054.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261377339|gb|ACX80082.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317113419|gb|ADU95911.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 609

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 159/386 (41%), Gaps = 28/386 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + H+++GV      GR+ L N A  ++  
Sbjct: 238 GQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLE 527
                +   + I ++     +Y  E+   +  + I+  S D+E   L+ +L         
Sbjct: 298 VSRETVLS-SSIVDVLGIADQYTFETLLEERDSLILDFSTDEELYILRASL--------- 347

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S+I           V + D    E           K D  +  FV +VS+ELR+PLT +
Sbjct: 348 -SVIQKEGGFVNGLIVVLHDITEQE-----------KIDRERRQFVANVSHELRTPLTTM 395

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + + L        +    ++++ +   +  ++ LVND+L L+ +D+   KL  + I  
Sbjct: 396 KSYLEALGDGAWQDKDI-APRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWINF 454

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +   ++V          +NIR       +      D  ++ Q+   I+SNA+ +S +G T
Sbjct: 455 SAYFHKVIDRFE-LTKSDNIRFVRKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGGT 513

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           +  +      + I SV + G  IP+     +F RF        R   G GLGL+I +  +
Sbjct: 514 ITFRVRELADEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKEVV 573

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
             HGG +   S +   TTI   +P +
Sbjct: 574 VAHGGTIWAESKEHKGTTIYFTLPLE 599



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 20/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N + + +  +    + ++   D L
Sbjct: 253 EAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIVDVL 312

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                    + +Q  ++T  E   S+     T ++ + L    ++ +        G I +
Sbjct: 313 G--------IADQYTFETLLEERDSLILDFSTDEELYILRASLSV-IQKEGGFVNGLIVV 363

Query: 416 FENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEG 446
             ++T Q  +D E +           T +      ++ L +G
Sbjct: 364 LHDITEQEKIDRERRQFVANVSHELRTPLTTMKSYLEALGDG 405


>gi|332799516|ref|YP_004461015.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332697251|gb|AEE91708.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 572

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 87/365 (23%), Positives = 164/365 (44%), Gaps = 35/365 (9%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
             +   K     +  +++GV  F    +I ++NP    +  T +   +   +I       
Sbjct: 237 ALDQEKKQLQNVLLSMTDGVVTFDTANQIIMANPQALEIMPTIKEHDNSYLNI------- 289

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVT 546
                          ++    D  + +   L  ++  ++   + PL N  Q +   + V 
Sbjct: 290 ------------LEPLLKHVKDSGEYISEEL-RINGRIISTRLTPLFNENQQLWGILVVL 336

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V  ER L          ++++  F+  +S+ELR+PLT + G+T+ L    + +   + 
Sbjct: 337 KDVTRERKL----------EDLRKEFLGDISHELRTPLTYLQGYTEALLDGLVEN-REEH 385

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+  I   +  L  LV+++L L+ ++AG + +    + + DL+  V + +     + N
Sbjct: 386 DRYLNVILEETLRLRRLVDELLQLSHIEAGHLNIKKDRVSIKDLIERVSKKVLPICDDKN 445

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +K+  +  + S  AD  R+ Q+   ++ NA+ +SS  S +I+KA       I SVK++
Sbjct: 446 IELKIEIE-DIPSITADEDRIEQVMINLIDNAVRYSSNDSKIIIKAQSCKEGIIISVKDS 504

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           GS IPED    ++ RF        R+  G GLGL+IV+  + LHGG V   +  EG    
Sbjct: 505 GSGIPEDELPFIWERFYKVDKSRTRQKSGTGLGLAIVKKIVELHGGRVWAKNCPEGGAEF 564

Query: 785 NCRIP 789
           +  +P
Sbjct: 565 SFLMP 569


>gi|224540067|ref|ZP_03680606.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518298|gb|EEF87403.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1039

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 140/244 (57%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ LT   E   +++ +K++F+ ++S+E+R+PL  I+GF+ +L +++       + 
Sbjct: 657 RKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEE---KQ 713

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV  I  ++T+LL L++DILDL+ ++AG ++LNYS I LN+L+ E+++    ++  + +
Sbjct: 714 EYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKTDAV 773

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +          ++ RL Q+   +++NA+ F+ KGS +         +  F V + G
Sbjct: 774 KLEFVEPAGPCMAYTEKNRLSQLMINLVTNAIKFTEKGS-IRFGYEMRENELYFYVADTG 832

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IP+D  +++F RFV      Q  G GLGLSI ++ ++  GG + + S +   +T    
Sbjct: 833 CGIPKDKQQNIFGRFVKLNSFAQ--GTGLGLSICKTLMDHMGGRIGVESEEGKGSTFWFT 890

Query: 788 IPSK 791
           +P K
Sbjct: 891 LPYK 894


>gi|154490162|ref|ZP_02030423.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
 gi|154089054|gb|EDN88098.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
          Length = 798

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 125/625 (20%), Positives = 252/625 (40%), Gaps = 52/625 (8%)

Query: 189 SNHISVFKVLFDSLDFLV--WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
           S  +   +    ++      W   +  ++      Y         +  +A+ E R L   
Sbjct: 201 SEGVEPVRPFLQNIPVATLPWSTHKIRNL------YPILINNLDELPPEAVEEKRYLKAR 254

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
                ++    ++      +        + + +         + I   ++K    N+ L 
Sbjct: 255 RTCSLILIPLIIKGESWGYMGIDIVDKYRMWSLEDYQWLSSISNIISIITKMARTNEALD 314

Query: 307 HTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEID--LAFLATNP-SNDELLEFL 359
           H+ ++L N+     V I ++D+  YL   N   VE++ +    + L  N   N  + + +
Sbjct: 315 HSEKLLRNIYTNIPVGIELYDKKGYLVDLNNMDVEIFGLPSKESVLGLNIFENPMINDEI 374

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPRGGTI-WM 415
           R      E +++     ++   + + E       + NG       V +  +  G  I +M
Sbjct: 375 REKLISREPVSF-----HMDYSFNTIEDKGFYPTMKNGTIDIFTKVCMLYDIYGDLINYM 429

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI---KLSNPAFRSLWKTEEN 472
           F NL    D    YN + +      +H    V+ F   G      L+   +      +  
Sbjct: 430 FINL-DNTDKAVAYNRIEE-----FEHFFSLVSRFAKVGYAKFDLLTREGYAIDQWYQNL 483

Query: 473 RLSPGTHIRNIAATCSRYYNESD--GWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYS 529
               G  +  +    S+ + E     ++ F  +     D  R+ L+       +      
Sbjct: 484 GEKEGVPLSEVIGVYSQIHPEDRKVMFNFFEQVKKGQCDSIRRELR---VKYGEGWHWTR 540

Query: 530 IIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +  + N Q+     +       D     +   ++ E   + D +K++F+ ++S+E+R+PL
Sbjct: 541 VNVMRNTQSTNPDRLEMICVNYDITEL-KETQKQREKAEELDRLKSAFLANMSHEIRTPL 599

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ LL  +       ++ Q+VE I  ++ +LL L++D+LDLA +++GI++L    
Sbjct: 600 NAIVGFSTLLVDT---DDPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELKLVE 656

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L +L  E+  S+  K+    + + V+ D        D+ RL QI S  ++NA+  +SK
Sbjct: 657 VDLRELCKELVVSMRIKVPA-EVALCVVPDLPSYIMRCDKVRLTQIISNFINNAIKHTSK 715

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G T++L       +  FSV + G  +  ++ + VF+RF        ++G GLGLSI +S 
Sbjct: 716 G-TILLGYEIRWDEIEFSVTDTGDGMSPEVQRHVFDRFYKGNSF--KQGTGLGLSICKSI 772

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I   GG + + S     +     +P
Sbjct: 773 IEQVGGKIGVESEIGKGSRFWFTLP 797


>gi|254424565|ref|ZP_05038283.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192054|gb|EDX87018.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 615

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 159/367 (43%), Gaps = 18/367 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           K     +     I  LS+G+ V      I   NP   +++ T+   L+ G H   I    
Sbjct: 255 KLVAEKQRSEAIIYSLSDGIVVVDDQLHIVAINPVAATIFGTKPK-LAQGRHCLEIIEDR 313

Query: 488 SRY-----YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           + Y       ES    L A   +   D  +S + T+E  S    +Y   P+         
Sbjct: 314 TLYDQLQSVAESQTPALPAGPSSQGSDA-QSFELTIERGSIEHYQYIATPVTTEDNRRLG 372

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V           L +    L++ D++K+ FV   S+ELR+PLT +    DLL  +    L
Sbjct: 373 VV---------LLLQNVTNLKQLDQLKSEFVMTASHELRTPLTGMAMSIDLLTETAKTKL 423

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++ + + ++        L +LVND+LDL+ +++G ++++ +T+    L+ +  + +  + 
Sbjct: 424 SNNEQELLQTAQEDVERLRDLVNDLLDLSKIESGKLEVDKTTVDPRQLVEKAIELLKIQS 483

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +  I +   +   L     D  ++  + + +++NA+ ++ +  T+ + A R       +
Sbjct: 484 EDKQIEVSSQTASNLPKVEVDVNKITWVMTNLIANALRYAKE--TIEVIAKRHGTWISIA 541

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++G  I       +F++FV         G GLGL+I +  I  HGG + + S+    +
Sbjct: 542 VADDGPGIDPAYQTKIFDKFVQVKTEKDVGGSGLGLAICKEIIKAHGGTIWVDSTPGHGS 601

Query: 783 TINCRIP 789
           T    +P
Sbjct: 602 TFTFTLP 608


>gi|310818443|ref|YP_003950801.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391515|gb|ADO68974.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 661

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 104/508 (20%), Positives = 206/508 (40%), Gaps = 38/508 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +E    +       +L+ L  A+     +  L + N+ + E   ++       PS +  
Sbjct: 158 EREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAE----EPSLEVF 213

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GT 412
           L+ +  A++   +   + W E +  V +     +   H  +G     +  + P     G 
Sbjct: 214 LKVVHPADR---EHMRREWTEAVRQVSRMEREFRMRRH--DGTWRWHLGRAVPERDGTGR 268

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEE 471
           +  F  +   +D + +    ++    T+D   + V +F P+   +  +N         E 
Sbjct: 269 LVGFIAVATDIDDKKRAEATLERFKATLDATLDCVLMFEPEHLTLTYANVGATKQLGLER 328

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT------SFDDERKSLQGTLELLSDSV 525
            +L     +          ++E     + A + +      ++    +   GT E+  + V
Sbjct: 329 EQLVGTRMLE-----VEDAFDEEAFRKILAPLQSGEQPSHTYSTTHRRRDGT-EIPVEVV 382

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           L+Y        + +    ++T+  RAE AL           E K++F+   S+ELR+PL 
Sbjct: 383 LQYVAAGGGPGRFVSVARDITERKRAEEALLLA-------SEAKDAFLAAASHELRTPLA 435

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
              G   L      G   +   + ++ I+     +  LV D+LD++ + AG + L+    
Sbjct: 436 AAKGHAHLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLDLERF 495

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  L+ E    +      + +R+++    +      DR RL Q+ + +LSNA+ +S +G
Sbjct: 496 DLGTLIRETCDRMGVLSQLHPLRVELQEQLEGLW---DRGRLDQVLTNLLSNAIRYSPEG 552

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             V++KAA D      SVK+ G  IP +    +F RF       +  G+GLGL+I +  +
Sbjct: 553 GEVLVKAAADGEGVQLSVKDCGVGIPPEKQGLIFERFGRAHGS-KYGGLGLGLTISQGIV 611

Query: 766 NLHGGHVSISSSD--EGVTTINCRIPSK 791
             HGG + + S       +T +  +P +
Sbjct: 612 EQHGGRIWVDSQGCAGDGSTFHVWLPRE 639



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 82/288 (28%), Gaps = 28/288 (9%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            S L     +          ++ L ++L   +W     G + + N  +++ T  E     
Sbjct: 150 QSALLRQKEREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAEEPS 209

Query: 235 -----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE- 288
                K +  + +      ++   +   + +   E       G  + +    V    G  
Sbjct: 210 LEVFLKVVHPADREHMR--REWTEAVRQVSRMEREFRMRRHDGTWRWHLGRAVPERDGTG 267

Query: 289 -----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR-YLQFHNRSFVELWEID 342
                  +A D+  +      L      L      + +F+     L + N    +   ++
Sbjct: 268 RLVGFIAVATDIDDKKRAEATLERFKATLDATLDCVLMFEPEHLTLTYANVGATKQLGLE 327

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ---- 398
              L        +   +       ++  ++     + S  + S T+  T    +G     
Sbjct: 328 REQL--------VGTRMLEVEDAFDEEAFRKILAPLQSGEQPSHTYSTTHRRRDGTEIPV 379

Query: 399 --TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              L  +      G  + +  ++T +   E       + +   +   S
Sbjct: 380 EVVLQYVAAGGGPGRFVSVARDITERKRAEEALLLASEAKDAFLAAAS 427



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 38/144 (26%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L  Q + E             ++ L E +   G DG++   N  +R     E    S   
Sbjct: 153 LLRQKEREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAEEPSLEV 212

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            ++ +      +        +        +   +   GT        +            
Sbjct: 213 FLKVVHPADREHMRREWTEAVRQVSRMEREFRMRRHDGTWRWHLGRAVPERDGTGRLVGF 272

Query: 539 MLTFVNVTDSVRAERALTEKNEAL 562
           +    ++ D  RAE  L      L
Sbjct: 273 IAVATDIDDKKRAEATLERFKATL 296


>gi|289579383|ref|YP_003478010.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289529096|gb|ADD03448.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 470

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 125/274 (45%), Gaps = 2/274 (0%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + L +  L    +   N    +      +     ++     + L + ++++  FV +VS+
Sbjct: 198 QPLKEMSLAVQQLAKGNFSARVQHKEEDEIGELAKSFNVMAKELEQLEDMRKDFVANVSH 257

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELRSPLT+I G+ D +    +     K   Y++ +   +  +  L++D L++  +++G  
Sbjct: 258 ELRSPLTSIQGYIDGILDGTIPV--EKACDYLKIVQKETRRMSRLIDDFLEMTKLESGQF 315

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+ +   +N+L+         ++ E ++ +KV  +      +AD+ ++ Q+ S ++ NA
Sbjct: 316 PLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIADKDKIEQVLSNLIDNA 375

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + FS +   + +     +     ++K+NG  I  +  + +++RF        + G GLGL
Sbjct: 376 IKFSKEKGIIHIFTETKDDKVFITIKDNGIGISPEDQEHIWDRFYKADKSRGKDGAGLGL 435

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            IV+  IN H   + + S           +P K+
Sbjct: 436 YIVKRIINAHNEEIWVESKIGRGAAFTFTLPVKK 469


>gi|297539506|ref|YP_003675275.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297258853|gb|ADI30698.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 681

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/510 (19%), Positives = 203/510 (39%), Gaps = 36/510 (7%)

Query: 300 TVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            + +     + + +++         I+DQ       N        ID  FL TNP+ ++ 
Sbjct: 30  ELGESKQLYHTLFNSIDEGFCLIEMIYDQQE-----NP-------IDWRFLETNPAFEKQ 77

Query: 356 LEFLRSANKLPEQLNWKT---WKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRG 410
                +  +   +L       W      V ++ E  +         G+   +        
Sbjct: 78  NGLYEAEGRRISELAPDMEPYWFNIYGEVARTGEPIRFQNETKALGGRWFDLYAFRIGEP 137

Query: 411 G---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           G      +F+++T     +      ++     +    + +     +G+I   N A     
Sbjct: 138 GSHKIAVLFKDITKGKKADEATQYALQYARSLLGASLDPLVTIDAEGKITDVNEASEHAT 197

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSV 525
                RL           T      E      F   +  +    + + G +   L + S+
Sbjct: 198 GIPRERLIGTDFCNYFTDTVKAR--EGYQKVFFDGFVRDYPLAIRHVSGRIMDVLYNASI 255

Query: 526 LE---YSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYEL 580
            +    +++ +  A   +T  N+ D    E+   L     A  +A+  K+ F+ ++S+EL
Sbjct: 256 YKDESGNVLGIFAAARDVTQQNILDQKLREKNIELERSKIAAEQANLAKSDFLSNMSHEL 315

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF  LL      +    Q++ ++ I  +   L +++N+ILDLA +++G   +
Sbjct: 316 RTPLNAILGFAQLL-EGGTPAPTETQTKRLKEILKAGWYLTDMINEILDLAKIESGQTPM 374

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               ++L +LL E +        E+ I++      ++ S  AD+ +L Q+ S +LSNA+ 
Sbjct: 375 LLEPVLLTNLLFECQSMFEPNALESGIKLLFSMVNRMWSVRADQTKLKQVVSNLLSNAIK 434

Query: 701 FSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGL 758
           ++S+  TV +K +    G    SVK+NG+ +  +    +F  F       G + G G+GL
Sbjct: 435 YNSEQGTVEVKCSESALGRIRISVKDNGAGLSAEKLAQLFQPFNRLGQEVGVKEGTGIGL 494

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++ +  I + GG + + S+    +     +
Sbjct: 495 AVSKKLIEMMGGTIGVESAVGVGSEFWIEL 524


>gi|295319850|gb|ADG00228.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. 230613]
          Length = 522

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 168/396 (42%), Gaps = 37/396 (9%)

Query: 401 HVIVTSNPRGGTIW-MFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VI+ S+   G +   F    ++     +E +           +  +  GV     + ++
Sbjct: 155 RVIINSDDEIGRLGRTFNAMADILENSLVEVRDKQ--NRLEAILKSMDSGVVAIDKEFKV 212

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP    L+  + + +  G ++ +            D    +  I   + ++R     
Sbjct: 213 IMINPYANKLFGIKRDII--GENLMDNIRDFELEKVLKDKELGYKEIGILWPEKRTLRVK 270

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +++S            N  T+    ++TD  + E               ++  FV +V
Sbjct: 271 TTDIISK---------YDNIGTVAVVQDITDIKKLE--------------NMREQFVANV 307

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF++ LK          + ++++ I+  +  L  L+NDIL L+ ++  
Sbjct: 308 SHELKTPLTSIKGFSETLK---YVDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQ 364

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L    I LN+L+ +V   +     + NIRI ++ + K+   + ++ +  Q+   ++ 
Sbjct: 365 KQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLIGNKDKYNQMIINLVD 423

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ ++     V +   +D G+ +F V++ G  I E+    +F RF        R   G 
Sbjct: 424 NAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGT 483

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    G + + S  +  T    +IP 
Sbjct: 484 GLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIPL 519



 Score = 46.5 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSK--EI 299
           LF   I   MI      +     ++  +            +   G    A+ D+ +   +
Sbjct: 124 LFSSRISMAMIKPIKNLEFVTSRIARGDFDRRVIINSDDEIGRLGRTFNAMADILENSLV 183

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V D+      IL ++   +   D+   +   N    +L+ I    +      + L++ +
Sbjct: 184 EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPYANKLFGIKRDIIG-----ENLMDNI 238

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWM 415
           R         + +   + I  ++            P  +TL V    I++     GT+ +
Sbjct: 239 RDFELEKVLKDKELGYKEIGILW------------PEKRTLRVKTTDIISKYDNIGTVAV 286

Query: 416 FENLTVQVDLE 426
            +++T    LE
Sbjct: 287 VQDITDIKKLE 297


>gi|197106701|ref|YP_002132078.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480121|gb|ACG79649.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 554

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 155/369 (42%), Gaps = 12/369 (3%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           + L  V    ++  SEG+ V     RI + +P   + +    + +  G  I  +     R
Sbjct: 40  DNLEDVLNGILNISSEGIVVLDARLRILVFSPGAEAAFGWSADEMV-GQSIERLIPPALR 98

Query: 490 YYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNV 545
             +        A    S    +R  + G         LE  +  L  ++  +      +V
Sbjct: 99  ASHRKHVEAFAAGEAQSRRMSDRSDIFGLRRNGEVFPLEVGLSKLMTSKGQIYTALLRDV 158

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +D   AE+AL       + A++ K++F+  +S+E+R+PL  ++G    +       L   
Sbjct: 159 SDRREAEQALALAAAEAQAANQAKSAFLAAMSHEIRTPLNGVLGMAQAMAME---DLPPH 215

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q + +E I  S   LL ++ND+LDL+ ++AG ++L  +   + +L      +        
Sbjct: 216 QRERLEVIRQSGESLLAILNDLLDLSKIEAGKLELEDAEFDIQELARGAHATFVAVAEAR 275

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +  +V ++    G +  D  R+ QI   ++SNA+ F+  GS V +   R  G     V+
Sbjct: 276 GLAFEVAVAPAARGVYRGDPLRVRQILHNLISNALKFTEAGS-VRVTVGRSGGALSLVVQ 334

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +    +F +F        RR  G GLGL+I      + GG + + S+     
Sbjct: 335 DTGIGIPPEKAARLFQKFEQADASTTRRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGA 394

Query: 783 TINCRIPSK 791
           T    +P K
Sbjct: 395 TFTVLLPLK 403


>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
          Length = 1268

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 163/384 (42%), Gaps = 26/384 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRLSPGTHIRNI 483
             + + +  +Q   +      +     +G I   NPA   L      E        I ++
Sbjct: 378 TAEISRVNILQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHL 437

Query: 484 AATCSRYY---------NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            A    +          N + G++   A       +        +      ++ ++  L 
Sbjct: 438 PAEVEHHAAKLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALK 497

Query: 535 NAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + Q      +    ++T  ++ E  L +  E    A++ K+ F+ ++S+E+R+P+  ++G
Sbjct: 498 DEQGQLAGFLGIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLG 557

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              L+  S   +L+ +Q+ Y+E   +++  LL L+NDILD + ++AG ++L+     L D
Sbjct: 558 LLQLVANS---TLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTD 614

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST- 707
           LL ++    ++   +  + +       +    + D  R+ Q+   ++ NA+ F+ KG   
Sbjct: 615 LLQDIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEIL 674

Query: 708 VILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           + +++        +  FS+K+ G  I  +   ++F+ F         +  G GLGL+I +
Sbjct: 675 ISIRSQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISK 734

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             +NL GG + + S     +T + 
Sbjct: 735 RLVNLMGGEIGVESEFGCGSTFSF 758


>gi|116332710|ref|YP_794237.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116098057|gb|ABJ63206.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           brevis ATCC 367]
          Length = 618

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/420 (21%), Positives = 163/420 (38%), Gaps = 38/420 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  + HV V  N   G       NL+V+V+  +    +  +     + 
Sbjct: 212 DEMKKQTLRIARGDYSGHVHVYGNDELGQLASAVNNLSVRVEEAQESTESERRRLDSVMA 271

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G + + N    S     E   + G  I ++      Y           
Sbjct: 272 HMTDGVIATDRRGNVTIINETASSFLD-HEPDDAVGKSILDLLDIRDDY----------- 319

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVRAERALTEK 558
                      +L+  LE   D VL++S      +  A   L              L + 
Sbjct: 320 -----------TLRELLEDPDDLVLDFSTKEHDLILQAYFSLIQRESGFISGLVCVLHDV 368

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E  +K D+ +  FV +VS+ELR+PLT++  + + L              +++     + 
Sbjct: 369 TEQ-QKIDQARREFVSNVSHELRTPLTSVRSYIEALSEGAWKD-PKVAPDFLKVTQEETD 426

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-----ENNIRIKVIS 673
            ++ ++ND+L L+ +D+G  K++   + LN+L N V       +      E    IK   
Sbjct: 427 RMIRMINDLLTLSRMDSGTQKVDLEMVNLNELFNYVLDRFDMMLKQDDQPEKTYTIKRDF 486

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +      D  R  Q+   +++NA+ +S  G  V  +    + + I SV + G  IP  
Sbjct: 487 TKRDLWVEIDTDRFTQVLDNLMNNAIKYSPDGGVVTARLLETHNNVILSVSDQGLGIPRA 546

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F+RF          + G GLGL+I    + + GG + + S +   +T    +P K
Sbjct: 547 DIPRIFDRFYRVDKARSRAQGGTGLGLAISREVVQMLGGRIWVDSREGRGSTFYISLPYK 606


>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas
            ingrahamii 37]
          Length = 1574

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 17/284 (5%)

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            K +    E   D  L + I+ +  A  +  F          R LT  N A+ KA+  K+ 
Sbjct: 777  KWVSIVFEKTFDYALLWKILAIFLAVLLGIFYWN-------RRLTMMNRAIHKANMAKSE 829

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+P+  IIG ++L   S    +  +   Y+  I +S   LL ++N ILD +
Sbjct: 830  FLANMSHEIRTPMNAIIGLSEL---SLNQDMTPQLRDYLSKIHSSGNSLLGIINGILDFS 886

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQI 690
             ++AG + L      L D+L+ +  +    + E NI +    D  +    V D  R  QI
Sbjct: 887  KIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITSIDPDVPWHLVGDPLRTGQI 946

Query: 691  FSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            F+ +++NA+ F++KG   I  +  +  D     +FSV + G  IP+D   S+F  F    
Sbjct: 947  FTNLINNAIKFTNKGQITICASCLEKDDKQVRLLFSVADTGLGIPKDRIASLFEPFAQAD 1006

Query: 747  HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                R   G GLGLSI +  +    G + I S     +  +  +
Sbjct: 1007 GSTSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGSVFSFEL 1050


>gi|256061652|ref|ZP_05451791.1| sensory box histidine kinase [Brucella neotomae 5K33]
 gi|261325661|ref|ZP_05964858.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            neotomae 5K33]
 gi|261301641|gb|EEY05138.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            neotomae 5K33]
          Length = 1035

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|255533739|ref|YP_003094111.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346723|gb|ACU06049.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 797

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 115/637 (18%), Positives = 233/637 (36%), Gaps = 56/637 (8%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
           +H++            +       D+LW    +K           + I         E  
Sbjct: 34  DHMAKLASFLCGTPIAI-IALVDEDLLW----FKSTIGITYNEMPQGISFCEHTLTGEQT 88

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE--AGIAIDVSKEITVNDQLTH 307
             +  + + E+ F    S +   + + Y    +++  G     + +  +    ++D    
Sbjct: 89  FEVYDARSDER-FKAHPSVVGKPHIRFYAGTALIDEDGSKLGALCVFDTAPRKLSDAQKE 147

Query: 308 TYEILHNLTVA-IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS----- 361
             EIL    VA I++  ++  L  +N  + EL  I     A +P    +L++        
Sbjct: 148 GLEILARTVVAHISLKKKSEALIANNHRYEELLNI----TAVSPEIHCILDYTGKVLFIN 203

Query: 362 -------ANKLPEQLNWKTW----KENIFSVYKSSET---------HKDTWHLPNGQTLH 401
                     + E +    W    +E+I  + K  E            D   +     + 
Sbjct: 204 NAITNILEYTVEEAIGLNIWNFCHREDIDRIVKIIEEGLRNKIKEFVIDFRIVSKTGVIR 263

Query: 402 VIVTSN--PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +  S     G       ++T    +E +   L  V  +     +  + +   +  +   
Sbjct: 264 WLGWSMVAKNGRWYAYGRDITENKKVEHELMKLSFVASKV----NNAIVINDANNHVTWV 319

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N AF  +     + L  G  + ++ A         +       +  SF  +  + +   +
Sbjct: 320 NEAFEKITGFNLDDLK-GRRLGDLIAGPETDMALMERARAQTKLNQSFTVDLLAYRKDGQ 378

Query: 520 LLSDSVLEYSII-PLPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            +  S+    +   L N +  +  +    D  R ER + E  E   +  E K  F+  +S
Sbjct: 379 PIWLSIYNTVVFNDLGNVEIEVEIIIDITDKKRVEREMLEAKEQALQLSEAKEMFLSVMS 438

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  +IG T LL  +      + Q + +  +  S   LLN++NDILD   ++ G 
Sbjct: 439 HEIRTPLNAVIGMTHLLIEN---DPRASQIEDLNILKFSGENLLNIINDILDFTKMETGN 495

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++L      +  L  ++  S+     +    ++++ D ++     D+ RL QI   +L N
Sbjct: 496 LQLEALPFSMKALTTDIITSLYVGATKKGNILELLYDDQIPHLSGDKTRLYQILMNLLGN 555

Query: 698 AMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQR 751
           A+ F+ +G  +    +L+    N    F + + G  IPED    +F  F         + 
Sbjct: 556 AIKFTDQGKIILSVKLLEQDAVNASLYFEISDTGIGIPEDKLSYIFETFTQAKTDISRKY 615

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+I +  + L+   + + S +   TT +  +
Sbjct: 616 GGTGLGLAITKKLLELYNSEIQVKSREGAGTTFSFTL 652



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 92/322 (28%), Gaps = 39/322 (12%)

Query: 152 AIKIEGRVSGSCAFLR--ILSLDGIYSE----LAETTLKCKKLSNHISVFKV-------- 197
            I  +G   G+          L     E    LA T +    L                 
Sbjct: 120 LIDEDGSKLGALCVFDTAPRKLSDAQKEGLEILARTVVAHISLKKKSEALIANNHRYEEL 179

Query: 198 --LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
             +      +    D  G +L+ N +    T       ++AIG +   F        I  
Sbjct: 180 LNITAVSPEIHCILDYTGKVLFINNA---ITNILEYTVEEAIGLNIWNFCHREDIDRIVK 236

Query: 256 SALEKNFCETVSTLEH-------GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
              E    +    +         G  +      V  +        D+++   V  +L   
Sbjct: 237 IIEEGLRNKIKEFVIDFRIVSKTGVIRWLGWSMVAKNGRWYAYGRDITENKKVEHELMKL 296

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             +   +  AI I D N ++ + N +F ++   +L  L            L      PE 
Sbjct: 297 SFVASKVNNAIVINDANNHVTWVNEAFEKITGFNLDDLKGR--------RLGDLIAGPET 348

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTIWMFENLTVQVD 424
                 +    +    S T     +  +GQ + + + +    N  G      E +    D
Sbjct: 349 DMALMERARAQTKLNQSFTVDLLAYRKDGQPIWLSIYNTVVFNDLGNVEIEVEIIIDITD 408

Query: 425 LETKYNTLVKVQGETIDHLSEG 446
            +     +++ + + +  LSE 
Sbjct: 409 KKRVEREMLEAKEQAL-QLSEA 429


>gi|224535688|ref|ZP_03676227.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522698|gb|EEF91803.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 980

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/428 (20%), Positives = 182/428 (42%), Gaps = 24/428 (5%)

Query: 381 VYKSSETHKDTWHL-PNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGE 438
           V+K  +    T +  P       I+  +    TI +F  ++T + + E     + K    
Sbjct: 414 VFKEKQAITFTHYFKPTHTFYEFIICQSSEKHTIDIFGVDITARNEAENALREINKKLEM 473

Query: 439 TI---------DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           T+          +L   +     +  +   N         + + +    + + +      
Sbjct: 474 TLSVARIIPWRWNLKSDMITCESEQILAHMNFTKEKGSTPQAHIIKASEYFQKMHPEDVE 533

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN----- 544
              +         +  + ++ R   +      +D +   +++   + Q     +      
Sbjct: 534 RMQQIHKNLASGKLQHAKEEFRIITEVEGRKFTDWLETNAVVDQYDEQGNPISLVGSLLL 593

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  R E+AL    E   +++ +K++F+ ++S+E+R+PL  IIGF+ LL T++      
Sbjct: 594 ITERKRQEKALVTAREKALESERLKSAFLANMSHEIRTPLNAIIGFSSLLTTTE---DEH 650

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +++  I  ++ +LL L++DILDL+ ++A  +  NY  + LN L  +V++++  ++  
Sbjct: 651 EREEFISIIENNNQLLLQLISDILDLSKIEANTLDFNYQNVDLNGLARDVERTVRRRLQP 710

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            N+ +  I          +R RL Q+   +L NA  F+S GS +         +  F VK
Sbjct: 711 -NVVLNFIPGVTECHVQTERNRLSQVLINLLVNASKFTSTGS-ITFGYEIRGEELYFYVK 768

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTT 783
           + G  I ++    +F RF       Q  G GLGLSI ++ I    G + + S   +  +T
Sbjct: 769 DTGRGISQEDQNKIFERFTKVDTFTQ--GTGLGLSICKNIIEKMKGRIGVESEGKDKGST 826

Query: 784 INCRIPSK 791
               IP K
Sbjct: 827 FWFTIPYK 834


>gi|323699563|ref|ZP_08111475.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459495|gb|EGB15360.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 813

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 187/504 (37%), Gaps = 48/504 (9%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + D + Y+   N +  +L+++         +  +LL    + ++       +   E    
Sbjct: 33  VMDVSGYVLAANDAAAKLFDLKPGQGLQRSNIYDLLPADAADSR-------RAKIEEAIR 85

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGET 439
             ++    ++        ++  +         + +   +LT     +       + Q   
Sbjct: 86  TVRAVRFEEEIGGRSLVHSIVPVANPWGEVNRLAVHTLDLTKLHRTDEDLRREQQRQIFF 145

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE---------NRLSPGTHIRNIAATCSRY 490
           ++ L   V    PD  I+ +N  FR  + +              +  +    + A  +  
Sbjct: 146 MESLPGIVYHLYPDQTIRYANRYFRRYFGSPRNRNCREALNCSGTSCSLCPPMEAMNTDR 205

Query: 491 YNESDGWD-------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             E D  D       L  + +T  + ER  +   +++ +    E ++    +        
Sbjct: 206 AVEWDWTDNQGRTFHLQCSPMTDSNGERMIMVLGIDITARQRAEDALKMARDKLEDRVRQ 265

Query: 544 NVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              +  RA        + L    E    A   K+SF+ ++S+E+R+PL  I+G ++L  +
Sbjct: 266 RTVELERANVELTSKSQRLVTAMEKADAATRAKSSFLANMSHEIRTPLNAILGMSELALS 325

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                   ++ +Y+  +  +   LL+++NDILD + ++A  + L      L   +     
Sbjct: 326 ---IPDKDRKDRYLHRVMEAGNSLLSVINDILDFSKIEAARLTLENIDFDLRRTIEGTLD 382

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
                  E  + ++  +++    + V D  RL QI   ++ NA+ F+  G  V +     
Sbjct: 383 LHLIAAEEKGLELRAGVAEDVPPALVGDPSRLRQILINLIGNAIKFTETGG-VTVSVRPA 441

Query: 715 ---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
                    D    +F+V + G  IPE   + +F  F+        +  G GLGL+I + 
Sbjct: 442 APADDLKPGDPITLVFAVTDTGVGIPEHKQRDIFQSFLQADDSITRKYGGTGLGLAICQL 501

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG +++ S +   +T    
Sbjct: 502 LVELMGGELTLESREGMGSTFTFT 525



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 99/308 (32%), Gaps = 39/308 (12%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKR 251
              + L DS     +  D +G +L AN +  K  +   G   Q++             +R
Sbjct: 18  ETSRALMDSSVESAFVMDVSGYVLAANDAAAKLFDLKPGQGLQRSNIYDLLPADAADSRR 77

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE----AGIAIDVSK----EITVND 303
                A+             G +  + IV V N +GE    A   +D++K    +  +  
Sbjct: 78  AKIEEAIRTVRAVRFEEEIGGRSLVHSIVPVANPWGEVNRLAVHTLDLTKLHRTDEDLRR 137

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +       + +L   +     ++ +++ NR F   +                    R+  
Sbjct: 138 EQQRQIFFMESLPGIVYHLYPDQTIRYANRYFRRYFGSP---------------RNRNCR 182

Query: 364 KLPEQLNWKTWKENIF---SVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTIWMF 416
              E LN      ++        +    +  W    G+T H+  +     N     + + 
Sbjct: 183 ---EALNCSGTSCSLCPPMEAMNTDRAVEWDWTDNQGRTFHLQCSPMTDSNGERMIMVLG 239

Query: 417 ENLTVQVDLE-----TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            ++T +   E      +     +V+  T++     V +     R+  +     +  + + 
Sbjct: 240 IDITARQRAEDALKMARDKLEDRVRQRTVELERANVELTSKSQRLVTAMEKADAATRAKS 299

Query: 472 NRLSPGTH 479
           + L+  +H
Sbjct: 300 SFLANMSH 307


>gi|255531848|ref|YP_003092220.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255344832|gb|ACU04158.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 1179

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 130/617 (21%), Positives = 228/617 (36%), Gaps = 65/617 (10%)

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIG-------ESRKLFKEEIKKRMISSSALEKNF 262
           D  G +   N ++   T T G   Q  +            L     + + +S      NF
Sbjct: 185 DIDGFLKRVNPAF---TNTLGWQEQDLLNNSFYSFIHPYDLQPTSDELKKLSDGKNAVNF 241

Query: 263 CETVSTLEHGNNKS--YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL---TV 317
                T + G  ++  + +    +S     IA DV+K+  +  ++  +   L +      
Sbjct: 242 SNRFKT-KKGEYRTLQWSVTTETDSQKILAIARDVTKDKNLQQKILTSESRLKSFIENAQ 300

Query: 318 AIA-IFDQNRYLQFHNRSFV--------ELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            +    D +  L F N +          E+  + L  L     +  L ++LR      E 
Sbjct: 301 GLMFTHDLSGNLLFINNAGAHYLGYTKQEMQSMGLFDLIPKDHHAALNDYLR------EI 354

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            N    +  + +V+K        ++      L    T+ P    I    ++T + +L  +
Sbjct: 355 KNKGKAQGLMTTVHKKGNHIIWIFNC----VLENNATNKP--YVICNSIDITERHNLVKE 408

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
             T  K      D    G      +  + L      +  +        G        +  
Sbjct: 409 LRTRNKKLELANDIARLG------NWELNLVEQKL-TWSEVTRQIFEVGHDFEPSLESEL 461

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPN------AQTML 540
            YY      +     + +     KS    LELL+   + +    I +P        +   
Sbjct: 462 LYYKPGTTRENRFNALNAAVLHGKSWDLELELLTAKGNAIWIRSIGVPEFLEGRCYKISG 521

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++T   R E  L    E    A++ K+ F+ ++S+E+R+PL  IIGFTDLL  ++  
Sbjct: 522 TIQDITKIKRMEANLISAKEDAESANKAKSEFLANMSHEIRTPLNGIIGFTDLLIKTQ-- 579

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN  Q QY+  ++ S   LLN +NDILD + ++AG +++N+S   L ++  E    I  
Sbjct: 580 -LNETQQQYLSIVTQSGNALLNTINDILDFSKIEAGKLEMNWSKFNLYEMAEESADVIKY 638

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
           ++    + + +     L     AD  RL QI   +L NA+ F+  G  + LK        
Sbjct: 639 QVQSKGLEMLLNISADLPKYIWADELRLKQILINLLGNAVKFTESGE-IELKVEALTNPE 697

Query: 718 ----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGH 771
                + FSV++ G  I  D    +F+ F            G GLGL+I    + L    
Sbjct: 698 LPEIKYRFSVRDTGIGINPDKKLKIFDAFSQEDASTTKRYGGTGLGLTISNKLLGLMNSQ 757

Query: 772 VSISSSDEGVTTINCRI 788
           + + S     +     I
Sbjct: 758 LQVESVIGKGSVFYFEI 774



 Score = 44.2 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 88/276 (31%), Gaps = 18/276 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           EI    +L H  ++  +    I   D + +L+  N +F          L     N+    
Sbjct: 160 EIKSKKELNHFLKLYKSSHDLICEADIDGFLKRVNPAFTNTLGWQEQDLL----NNSFYS 215

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           F+   +  P     K   +   +V + +    K   +         + T       + + 
Sbjct: 216 FIHPYDLQPTSDELKKLSDGKNAVNFSNRFKTKKGEYR---TLQWSVTTETDSQKILAIA 272

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T   +L+ K  T        I++    +      G +   N A        +  +  
Sbjct: 273 RDVTKDKNLQQKILTSESRLKSFIENAQGLMFTHDLSGNLLFINNAGAHYLGYTKQEMQS 332

Query: 477 GTHIRNIA----ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                 I     A  + Y  E         ++T+   +       +  + + VLE +   
Sbjct: 333 MGLFDLIPKDHHAALNDYLREIKNKGKAQGLMTTVHKKGNH----IIWIFNCVLENNATN 388

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            P    +   +++T+     + L  +N+ L  A++I
Sbjct: 389 KP--YVICNSIDITERHNLVKELRTRNKKLELANDI 422


>gi|67924436|ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67853725|gb|EAM49058.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1044

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 163/383 (42%), Gaps = 34/383 (8%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFG-PDGRIKLS----------NPAFRSLWKTEENRLSPG 477
                +     +   ++G+  +   D  +  S          N     L  T  + + P 
Sbjct: 572 LRESERRYHLAVSGTNDGIWDWDLRDDTVYYSPVWMKILGYENNPLPHLLSTWSDNVHPE 631

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            + + I    +     ++ ++ F  I        +   G    +               +
Sbjct: 632 DYAQAIKDIENHLQGNTNIYENFHRI--------RHHDGHYIWIEAKGKCIRYQQGKPYR 683

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T  ++T+   A+ AL +  EA   A++ K+ F+  +S+E+R+P+  I+GF DLLK+ 
Sbjct: 684 LVGTITDITNKKAAQEALEKAKEAAEVANKAKSEFLATMSHEIRTPMNAILGFCDLLKSK 743

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                + K   Y++ I     +LL+L++DILD++ ++AG + + Y  I L +++ E+++ 
Sbjct: 744 I---TDEKSQNYLDSIDRIGKVLLSLIDDILDISKIEAGKLDITYEPIKLREIIIEIQRM 800

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
              K  E  ++I V  + ++    V D  RL QI   ++ NA+ F+ +G  + +   RD 
Sbjct: 801 FLEKAKEKQLQILVNIEVEVPDVIVFDEIRLRQILFNLVGNAIKFTEEG-LITISVKRDL 859

Query: 716 ----NGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
               +        ++K+ G  I  +  K VF+ F  +      +  G GLGLSI E    
Sbjct: 860 LQWKDDQYCSLEIAIKDTGIGIAPEQQKRVFDVFTQSEGQSNRKYGGTGLGLSITERLTK 919

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           + GG + + S     +T     P
Sbjct: 920 ILGGTIQLESELGKGSTFTLLFP 942


>gi|90423287|ref|YP_531657.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90105301|gb|ABD87338.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 612

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 167/383 (43%), Gaps = 23/383 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-----ENRLSPGT 478
           D E +Y  L +       ++S+ ++    +G +   +PA   L          + L    
Sbjct: 200 DEEDRYRLLAR-------NMSDVISRHARNGAVLFVSPAAEPLLGVPVSRLLGHGLFDRV 252

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---- 534
           H+ +  A  +   +   G +  +       D  +  +G         LE    PL     
Sbjct: 253 HVADRPAFLTALSDAGRGGEARSVEFRIRRDVPRGDRGRCNTADFIWLEMRCRPLEPSAK 312

Query: 535 ----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                A+ +    +VTD    E+AL     A  +AD  ++ F+  +S+ELR+PL  IIGF
Sbjct: 313 NATSEAEVVAVMRDVTDRKEQEQALELARAAAERADASRSHFLATMSHELRTPLNAIIGF 372

Query: 591 TDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           ++++ +   L    +++ +Y + I+ S   LL++VN ILD++ +++G  ++         
Sbjct: 373 SEMIVQEDVLMISAARRKEYAQLINDSGQHLLSVVNGILDMSKMESGKFEILPEPFAPRP 432

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            L      +A K  EN + +   +   L     D +   QI   ++SNA+ F+ +G TV 
Sbjct: 433 ALLNCCNLLALKARENEVDLVTRAPENLPQLTGDPRAFKQIVLNLVSNAIKFTERGGTVT 492

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           + AA +       V + G  I  D  K +   F   +     +  G GLGLSIV+S + L
Sbjct: 493 VSAAVEGARLALRVSDTGVGIGADDLKRIGEAFFQASKSYHRRHEGTGLGLSIVKSLVAL 552

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           HGG +S+ S  +  TT+   +P 
Sbjct: 553 HGGEMSVESKLDEGTTVTVMLPL 575


>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
          Length = 1252

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 163/384 (42%), Gaps = 26/384 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRLSPGTHIRNI 483
             + + +  +Q   +      +     +G I   NPA   L      E        I ++
Sbjct: 362 TAEISRVNILQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHL 421

Query: 484 AATCSRYY---------NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            A    +          N + G++   A       +        +      ++ ++  L 
Sbjct: 422 PAEVEHHAAKLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALK 481

Query: 535 NAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + Q      +    ++T  ++ E  L +  E    A++ K+ F+ ++S+E+R+P+  ++G
Sbjct: 482 DEQGQLAGFLGIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLG 541

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              L+  S   +L+ +Q+ Y+E   +++  LL L+NDILD + ++AG ++L+     L D
Sbjct: 542 LLQLVANS---TLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTD 598

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST- 707
           LL ++    ++   +  + +       +    + D  R+ Q+   ++ NA+ F+ KG   
Sbjct: 599 LLQDIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEIL 658

Query: 708 VILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           + +++        +  FS+K+ G  I  +   ++F+ F         +  G GLGL+I +
Sbjct: 659 ISIRSQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISK 718

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             +NL GG + + S     +T + 
Sbjct: 719 RLVNLMGGEIGVESEFGCGSTFSF 742


>gi|152997039|ref|YP_001341874.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150837963|gb|ABR71939.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1426

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/500 (19%), Positives = 202/500 (40%), Gaps = 34/500 (6%)

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           V+I   D    +   N    ++       +    +       ++S  +L     +K    
Sbjct: 500 VSIIATDTKGIITLFNHGAQKMLGYTAEEVVGQRTPVGF--HIQSEIELQRADIFKATGT 557

Query: 377 NIFS---------VYKSSETHKDTWHLPNG--QTLHVIVTSNPRG-----GTIWMFENLT 420
           ++           ++++ ++ + T+   NG  + + +++T          G + +  +++
Sbjct: 558 HVTDNLEVLIFKALHENFDSQEWTYVAKNGVARPVSLVITPMKSSDDEVIGFLGIAMDIS 617

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q   + +  +         +    G+  +  +      + +   ++   +++   G   
Sbjct: 618 EQKTTQRELISTRDQLLLAAEVAELGIWTWDIEDDTLEWSDSMFEIYHLSKSQKQDGIKY 677

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            +          +     L  A +   ++     +  L   S   +        NA+  +
Sbjct: 678 ADWYNRVHPDDRDMAENALKEA-VEGINEYNLVFRIVLPDDSVRFIFARASLHKNAEGKM 736

Query: 541 T-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           T       ++T     E  L +  +    A   K++F+ ++S+E+R+P+  I+G   L+K
Sbjct: 737 TKVTGINRDITQERGLEDWLRKAKDEADAASAAKSNFLANMSHEIRTPMNAILGMLHLVK 796

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   +L  +Q+ YV     S+  LL+L+NDILD + VDAG ++L  +   + +LL E+ 
Sbjct: 797 RT---TLTHQQNDYVSKAQISAKSLLSLINDILDFSKVDAGKLELEKAPFEVEELLCELS 853

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----L 710
             ++    E ++ +    D  + ++ + D+ RLLQI   ++SNA+ F+ +GS V+    L
Sbjct: 854 TVLSGSSLEKDVELIFDIDKDIPAYLIGDKLRLLQILINLVSNAVKFTLEGSVVLEIKQL 913

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
                      SVK+ G  I +D   S+F+ F        RR  G GLGL I   F+ L 
Sbjct: 914 SIDPRVSRLSVSVKDTGIGIAKDQIDSIFDVFSQGESSTARRFGGSGLGLVICRRFVELM 973

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + + S     +     I
Sbjct: 974 GGSLQVDSVLGEGSRFYFTI 993



 Score = 39.9 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 96/308 (31%), Gaps = 50/308 (16%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           ++  V    +    ++ +    I   + +  +   N+    ++      +       ++L
Sbjct: 334 RQREVMAHQSRITALVESSADGIISKNLDGVIVSWNKGAESIFGYTKEEVVGQ----KVL 389

Query: 357 EFLRSANKLPEQLN-WKTWKENIFSV-YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + L       E  + + + K+   S+  ++  T K    +P   T   I   N   G I 
Sbjct: 390 DLLVPPPLQDEDKSIFSSVKDKKESISIETRRTTKAGTDVPVSLTFSPIF--NDDDGIIG 447

Query: 415 M---FENLTVQVDLETKYNTLVKVQG------------------ETIDHLSE-GVAVFGP 452
           +     +++ +   E K   L                       + ++  SE  +     
Sbjct: 448 VSQSVRDISERKKAEAKIRELNTNLENQVKERTAELLELNLLLNDVVNASSEVSIIATDT 507

Query: 453 DGRIKLSNPAFRSLWKTEENRL-----SPGTHIR--------NIAATCSRYYNESDGWDL 499
            G I L N   + +       +       G HI+        +I      +  ++    +
Sbjct: 508 KGIITLFNHGAQKMLGYTAEEVVGQRTPVGFHIQSEIELQRADIFKATGTHVTDNLEVLI 567

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERA 554
           F A+  +FD +        +      +   I P+ ++       +   +++++    +R 
Sbjct: 568 FKALHENFDSQ--EWTYVAKNGVARPVSLVITPMKSSDDEVIGFLGIAMDISEQKTTQRE 625

Query: 555 LTEKNEAL 562
           L    + L
Sbjct: 626 LISTRDQL 633


>gi|153007087|ref|YP_001381412.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030660|gb|ABS28428.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 969

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 117/670 (17%), Positives = 232/670 (34%), Gaps = 52/670 (7%)

Query: 153 IKIEGR-VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
           ++  GR  +          +  + S   E   K    +  + + + LF++    +   D+
Sbjct: 311 VQALGRGETAGAPLQGPAEIVRLGSAFDEMAGKLVAANASLELHERLFETSPDPMVVLDR 370

Query: 212 AGDILWANISYKKN-------------TETEGIVFQKAIGESRK--LFKEEIKKRMISSS 256
           A  +   N +Y                 E  G+   +A+    +     E ++  + +  
Sbjct: 371 ALRLRAVNPAYAAMRGLSTGDLLGRPLVEVVGVDAFEAMAPRAERAFAGESVQYELWTDL 430

Query: 257 ALEKNFCETV-STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-ILHN 314
              +   E +   +       +  VR  +  G        S+ ++  +     +E +   
Sbjct: 431 PAGRRCLEAIYHPVRERERLEHVGVRFRDVTGRRHAEAAASQSLSFAEAERRRFEAVFRE 490

Query: 315 LTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLA-TNPSNDELLEFLRSANKLPEQLNWK 372
               I IFD ++   ++ NR+F+   +   A L       DE +   R A  +       
Sbjct: 491 APAGIVIFDGRDLRAKWSNRTFLSFLDAPFAQLGIAGLRIDEFVPHAREAGLVDVVR--- 547

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKY 429
             +     +   +  ++              V + P       + +   +T QV+     
Sbjct: 548 --RVGATGIPADTPEYRHEGFARGAAWWRWSVRAIPGEVGSDVLLLVTEVTEQVEARKVA 605

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-------TEENRLSPGTHIRN 482
                     +     GV + GP+GR  + N   R +W              + G  +  
Sbjct: 606 EDERLRLETILRTFPVGVILTGPEGRAGIVNDHARQIWGGDGALDAYRGAWAATGIPLAP 665

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                 R     +        I  FD  R ++      + D+    +         +  F
Sbjct: 666 EDWALQRALRRGEVSTGELIDIERFDGGRATILNNAAPIRDAFGRIT-------GAVAAF 718

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VTD+ RA+R   +           ++  +  VS++LR+PL+ II    +L        
Sbjct: 719 QDVTDTRRAQREAEDAVHH-------RDEVLAIVSHDLRTPLSAIIMGARVL-GGGAAED 770

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +       I++S   +  L+ D+LDLA+++ G + +  S    + L  E    I    
Sbjct: 771 PERVRATATRIASSGERMNRLIGDLLDLASLERGRLSMRRSAHAPSTLAREAADVIRPAA 830

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               + ++  +   L     D  R+LQ+   + SNA+  ++ G  V + A+      +F 
Sbjct: 831 EAKGLDVRWRAADDLPLVPCDHDRILQVLGNLTSNAVKATASGH-VAIGASARGDQVLFE 889

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G  IP +    VF+RF          G GLGL+I  + +  HGG +   S+    T
Sbjct: 890 VQDTGPGIPSEELPHVFDRFRRG-RSAAYAGTGLGLAIARALVEAHGGRIWAESTPGLGT 948

Query: 783 TINCRIPSKE 792
            +   +P  E
Sbjct: 949 VVRFSLPVVE 958


>gi|120601381|ref|YP_965781.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561610|gb|ABM27354.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 955

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 133/717 (18%), Positives = 254/717 (35%), Gaps = 79/717 (11%)

Query: 142 DLVAETQNDCAIKIEGRVSGSCAF-LRILSLDGIYSELAETT---LKCKKLSNHISVFK- 196
           D++A T +D  + + G+  G  A  +R  ++  + +E A              H    + 
Sbjct: 89  DILAGTCDDLLLPVSGQ--GGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRY 146

Query: 197 -VLFDSLDFLVWHRD--------QAGDILWAN--ISYKKNTETEGIVFQKAI-------- 237
             LF      +W +D                +   +Y +        F + I        
Sbjct: 147 AELFHLCPVPLWQQDVTEAQQAIDTLRTSGVHDLRAYFEAHPHVLAEFARRIRIVDANET 206

Query: 238 ------GESRKLFKEEIKKR------------MISSSALEKNFCETVSTLEHGNNKSYKI 279
                 G    L   ++  R            M++S A   +       L+ G       
Sbjct: 207 ASGLFAGCREDLLDPDLFMRLGMRQFVMELLVMLASGADRLSVEAACRALDGGERALQIE 266

Query: 280 VRVLNSFGEAGIAI-----DVSKEITVNDQLTHTYEILHNLTVAIA--IF--DQNRYLQF 330
            R++  FG  G+ +     D+++       L     ++  ++  +   ++  D      F
Sbjct: 267 ARLMPGFGLTGMRVIACGTDITERNRSQAALADFRNLVEAMSDNMIDMLWAKDTECRYIF 326

Query: 331 HNRSFVE-LWEIDLAFLATNPSND--ELLEFLRSANKLPE---QLNWKTWKENIFSVYKS 384
            NR+  E L   D   +         E    L   +   E     +    +      ++ 
Sbjct: 327 ANRAIRENLLHSDDERVLGRTDLHFAERQRRLGHEHTFGELCIDSDRVVLQTRTSGRFRE 386

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
               +  + + + Q   +        GT+    ++T+    E       ++   T++  +
Sbjct: 387 DGKVQGRYLMLDVQKSPLYDRQGKLLGTVGTGRDITLLKAQEDALLRSQQLLKWTVEAST 446

Query: 445 EGVAVFGPDGRIKLSNPAFRSL----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           + +  +       L N     L       +E          +         N   G   F
Sbjct: 447 DTIWQYDVVHDRFLCNNRCPGLLALSDAEDECHCRHRADPADAELLLHNLRNGQGGDKGF 506

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           +  +   DDE              V+EY     P    +    ++T+  R E  L +  +
Sbjct: 507 SMELRLRDDEGVWHWMYCR---GKVVEYDEEGRPTL-VVGANTDITERKRFETELRQARD 562

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               A++ K+ F+ ++S+E+R+PL  ++G   LL+      L S Q + +   S SS  L
Sbjct: 563 DAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLED---APLTSDQQELLHVASQSSRNL 619

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGS 679
           L ++NDILD   + +               L  V+ ++AT   + +IRI+          
Sbjct: 620 LTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAKDKDIRIETDISPNVPPL 679

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-----DFIFSVKNNGSSIPED 733
            + D  R  QI   ++ NA+ F+ +G+  + L     +        +  V+++G  IP+D
Sbjct: 680 LIGDVTRFRQILFNLVGNAVKFTQQGTVRISLHGLERHSPAGALRMLLMVEDSGIGIPQD 739

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           M  +VF  F  V  ++R +  G GLGL IV S ++  GG ++I S +   TTI C +
Sbjct: 740 MLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAIDSEEGAGTTIACTL 796


>gi|226950175|ref|YP_002805266.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226840994|gb|ACO83660.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 702

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/507 (19%), Positives = 205/507 (40%), Gaps = 17/507 (3%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA-FLATNPS 351
           ID+ ++  + D + +   +++N++  I +FD+   L   N++  ++ E+ +   L     
Sbjct: 170 IDILRKKEL-DYIKYLNNVINNISEGILVFDKYSKLILWNKAIEQIGEMKIKKILDIKEI 228

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG- 410
            +E   ++   +K    + +K  K N        +           +  ++   SNP   
Sbjct: 229 INEYDIYILDDHK---NMKYKIKKMNPDYNRSVKDLLLKLVKKDTNKIKYIEYNSNPIMD 285

Query: 411 ------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAF 463
                  TI   +N+T  ++ +       +     +D +   +AV   PD   +L N  +
Sbjct: 286 ENNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYRLVNERY 345

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L +    +   G  + N      R     +  ++   +      E         L S 
Sbjct: 346 EELVERLHTKKIKGNLLGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSG 405

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
               + +  + +       V++  S   E    + N  L K +++K+ F   +S+ELR+P
Sbjct: 406 EERFFKVRYIYHETKNKKRVHIHGSDVTEEL--KSNLELEKVNKLKDEFFTIISHELRTP 463

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT I     L        +N    + ++ I+ ++  LL L+N+ILD++  +AG + LN  
Sbjct: 464 LTIIYSSLQLAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNE 523

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +      +  SI    +  NI +   +  +      D+ +  +I   +LSNA+ F+ 
Sbjct: 524 YFDIVLETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTP 583

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
           +  ++ +       +F   VK+ G  IP++    +FNRF    ++      G G+GLS+V
Sbjct: 584 ENKSIYVTLKIYKNNFKLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLV 643

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++L  G + + S     TT   +I
Sbjct: 644 KKIVDLMDGEIKVYSILGKGTTFTVKI 670


>gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
 gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4]
          Length = 1268

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 163/384 (42%), Gaps = 26/384 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRLSPGTHIRNI 483
             + + +  +Q   +      +     +G I   NPA   L      E        I ++
Sbjct: 378 TAEISRVNILQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHL 437

Query: 484 AATCSRYY---------NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            A    +          N + G++   A       +        +      ++ ++  L 
Sbjct: 438 PAEVEHHAAKLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALK 497

Query: 535 NAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + Q      +    ++T  ++ E  L +  E    A++ K+ F+ ++S+E+R+P+  ++G
Sbjct: 498 DEQGQLAGFLSIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLG 557

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              L+  S   +L+ +Q+ Y+E   +++  LL L+NDILD + ++AG ++L+     L D
Sbjct: 558 LLQLVANS---TLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTD 614

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST- 707
           L+ ++    ++   +  + +       +    + D  R+ Q+   ++ NA+ F+ KG   
Sbjct: 615 LMQDIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEIL 674

Query: 708 VILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           + +++        +  FS+K+ G  I  +   ++F+ F         +  G GLGL+I +
Sbjct: 675 ISIRSQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISK 734

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             +NL GG + + S     +T + 
Sbjct: 735 RLVNLMGGEIGVESEFGCGSTFSF 758


>gi|322806796|emb|CBZ04365.1| phosphate regulon sensor protein PhoR (SphS) [Clostridium botulinum
           H04402 065]
          Length = 522

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 167/396 (42%), Gaps = 37/396 (9%)

Query: 401 HVIVTSNPRGGTIW-MFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VI+ S    G +   F    ++     +E +           +  +  GV     + ++
Sbjct: 155 RVIINSEDEIGRLGRTFNAMADILENSLVEVRDKQ--NRLEAILKSMDSGVVAIDKEFKV 212

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP    L+  + + +  G ++ +            D    +  I   + ++R     
Sbjct: 213 IMINPYANKLFGIKRDII--GENLMDNIRDFELEKVLRDKEPGYKEIGILWPEKRTLRVK 270

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +++S            N  T+    ++TD  + E               ++  FV +V
Sbjct: 271 TTDIISK---------YDNIGTVAVVQDITDIKKLE--------------NMREQFVANV 307

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF++ LK          + ++++ I+  +  L  L+NDIL L+ ++  
Sbjct: 308 SHELKTPLTSIKGFSETLK---YVDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQ 364

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L    I LN+L+ +V   +     + NIRI ++ + K+   + ++ +  Q+   ++ 
Sbjct: 365 KQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLIGNKDKYNQMIINLVD 423

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ ++     V +   +D G+ +F V++ G  I E+    +F RF        R   G 
Sbjct: 424 NAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGT 483

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    G + + S  +  T    +IP 
Sbjct: 484 GLGLAIVKHIVLSINGKIEVKSQPKKGTKFIVKIPL 519



 Score = 46.5 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 28/193 (14%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSK--EI 299
           LF   I   MI      +     ++  +            +   G    A+ D+ +   +
Sbjct: 124 LFSSRISMAMIKPIKNLEFVTSRIARGDFDRRVIINSEDEIGRLGRTFNAMADILENSLV 183

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V D+      IL ++   +   D+   +   N    +L+ I    +      + L++ +
Sbjct: 184 EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPYANKLFGIKRDIIG-----ENLMDNI 238

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHL-PNGQTLHV----IVTSNPRGGTI 413
           R                 +  V +  E  +K+   L P  +TL V    I++     GT+
Sbjct: 239 RDF--------------ELEKVLRDKEPGYKEIGILWPEKRTLRVKTTDIISKYDNIGTV 284

Query: 414 WMFENLTVQVDLE 426
            + +++T    LE
Sbjct: 285 AVVQDITDIKKLE 297


>gi|209526093|ref|ZP_03274625.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493481|gb|EDZ93804.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 1064

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 12/287 (4%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   +    ++++ S+    +   ++   ++T+  R  + LT KN  L + + +K+ F+ 
Sbjct: 298 QRVWQFTRQTLVQPSLTECFDKWWLIIAQDITEQYRVAQELTAKNADLIQLNRLKDEFLA 357

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+EL++PLT ++G + LLK   LG L+ +Q++Y + I  S   L+ +VNDILDL  ++
Sbjct: 358 CISHELKTPLTAVLGLSSLLKDKALGELSDRQAKYAKLIHQSGRHLMMVVNDILDLTRIE 417

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----------RIKVISDGKLGSFVADR 684
            G ++L    + +  + +   +++     + +I          +  +  +  L +  AD 
Sbjct: 418 TGQLELTPEGVNIQTVCDRALEAVLHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADE 477

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   ++SNA  F+  G  + L+  R     +F+V + G  IPE     +F +F  
Sbjct: 478 LRLRQMLINLISNAFKFTPDGGYMGLRVNRWEDWIVFTVWDTGIGIPEQKQHLIFEKFQQ 537

Query: 745 NAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  Q  G GLGL + +    LHGG +S  S     T     +P
Sbjct: 538 LESPLNRQFEGTGLGLVLCQRLARLHGGDISFISHQGKGTEFTLLLP 584


>gi|168183173|ref|ZP_02617837.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|237796198|ref|YP_002863750.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182673684|gb|EDT85645.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|229263232|gb|ACQ54265.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 702

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/507 (19%), Positives = 205/507 (40%), Gaps = 17/507 (3%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA-FLATNPS 351
           ID+ ++  + D + +   +++N++  I +FD++  L   N++  ++ E+ +   L     
Sbjct: 170 IDILRKKEL-DYIKYLNNVINNISEGILVFDKHSKLILWNKAIEQIGEMKIKKILDIKEI 228

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG- 410
            +E   ++   +K    + +K  K N        +           +  ++   SNP   
Sbjct: 229 INEYDIYILDDHK---NMKYKIKKMNPDYNSSVKDLLLKLVKKDTNKIKYIEYNSNPIMD 285

Query: 411 ------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAF 463
                  TI   +N+T  ++ +       +     +D +   +AV   PD   KL N  +
Sbjct: 286 ENNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYKLVNERY 345

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L +    +   G    N      R     +  ++   +      E         L S 
Sbjct: 346 EELVERLHTKKIKGNLFGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSG 405

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
               + +  + +       V++  S   E    + N  L K +++K+ F   +S+ELR+P
Sbjct: 406 EERFFKVRYIYHETKNKKRVHIHGSDVTEE--FKSNLELEKVNKLKDEFFTIISHELRTP 463

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT I     L        +N    + ++ I+ ++  LL L+N+ILD++  +AG + LN  
Sbjct: 464 LTIIYSSLQLAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNE 523

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +      +  SI    +  NI +   +  +      D+ +  +I   +LSNA+ F+ 
Sbjct: 524 YFDIVWETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTP 583

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
           +  ++ +       +F   VK+ G  IP++    +FNRF    ++      G G+GLS+V
Sbjct: 584 ENKSIYVTLKIYKNNFKLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLV 643

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++L  G + + S     TT   +I
Sbjct: 644 KKIVDLMDGEIKVYSILGNGTTFTVKI 670



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 418 NLTVQVD--------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           N++ Q+         L  K    +K     I+++SEG+ VF    ++ L N A   + + 
Sbjct: 158 NISKQIKNKSEIIDILRKKELDYIKYLNNVINNISEGILVFDKHSKLILWNKAIEQIGEM 217

Query: 470 EENRLSPGTHIRN 482
           +  ++     I N
Sbjct: 218 KIKKILDIKEIIN 230


>gi|148380721|ref|YP_001255262.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|153931924|ref|YP_001385005.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|153937261|ref|YP_001388475.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|148290205|emb|CAL84324.1| putative sensory transduction histidine kinase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152927968|gb|ABS33468.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152933175|gb|ABS38674.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 702

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/507 (19%), Positives = 205/507 (40%), Gaps = 17/507 (3%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA-FLATNPS 351
           ID+ ++  + D + +   +++N++  I +FD+   L   N++  ++ E+ +   L     
Sbjct: 170 IDILRKKEL-DYIKYLNNVINNISEGILVFDKYSKLILWNKAIEQIGEMKIKKILDIKEI 228

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG- 410
            +E   ++   +K    + +K  K N        +           +  ++   SNP   
Sbjct: 229 INEYDIYILDDHK---NMKYKIKKMNPDYNSSVKDLLLKLVKKDTNKIKYIEYNSNPIMD 285

Query: 411 ------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAF 463
                  TI   +N+T  ++ +       +     +D +   +AV   PD   +L N  +
Sbjct: 286 ENNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYRLVNERY 345

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L +    +   G  + N      R     +  ++   +      E         L S 
Sbjct: 346 EELVERLHTKKIKGNLLGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSG 405

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
               + +  + +       V++  S   E    + N  L K +++K+ F   +S+ELR+P
Sbjct: 406 EERFFKVRYIYHETKNKKRVHIHGSDVTEE--FKSNLELEKVNKLKDEFFTIISHELRTP 463

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT I     L        +N    + ++ I+ ++  LL L+N+ILD++  +AG + LN  
Sbjct: 464 LTIIYSSLQLAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNE 523

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              +      +  SI    +  NI +   +  +      D+ +  +I   +LSNA+ F+ 
Sbjct: 524 YFDIVLETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTP 583

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
           +  ++ +       +F   VK+ G  IP++    +FNRF    ++      G G+GLS+V
Sbjct: 584 ENKSIYVTLKIYKNNFKLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLV 643

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++L  G + + S     TT   +I
Sbjct: 644 KKIVDLMDGEIKVYSILGKGTTFTVKI 670


>gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
 gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
          Length = 998

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 139/298 (46%), Gaps = 13/298 (4%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           ++   I   +  ER  +Q       D + E S     N        +V    + ++ ++ 
Sbjct: 444 EVSERIKLGYYSERARVQ-----TRDEIGELSKS--FNEMVNAVETDVIRREKDKQTVSV 496

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E   +A++ K++F+ ++S+ELR+P+  IIG++++L      + + +    ++ I+++ 
Sbjct: 497 LKEEAEQANKAKSAFLANMSHELRTPMNAIIGYSEILTEDATDNQHQEYIPDLKKINSAG 556

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+NDILD++ ++AG M+L+   I    L  EV  +    + +N   +K+I D  +
Sbjct: 557 KHLLQLINDILDISKIEAGKMELDIQDINFTSLAQEVADTSDALVTKNGNTLKIIKDESI 616

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFIFSVKNNGSSIPEDM 734
                D  ++ QI   ++SNA  F+ +  T+ L       DN      V++ G  I +D 
Sbjct: 617 QGITGDSVKIKQILFNLISNAAKFT-ENGTITLGYKTYQDDNNFLSIYVQDTGIGIEKDK 675

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              VF  F        R   G GLGLS+V+ F  L GG + + S     +T    IP 
Sbjct: 676 AAKVFEEFGQADSSTTRKYGGTGLGLSLVKKFSELMGGSIKLESEIGKGSTFTVTIPK 733


>gi|94313527|ref|YP_586736.1| histidine protein kinase [Cupriavidus metallidurans CH34]
 gi|93357379|gb|ABF11467.1| histidine protein kinase [Cupriavidus metallidurans CH34]
          Length = 1309

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/519 (18%), Positives = 191/519 (36%), Gaps = 29/519 (5%)

Query: 293  IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLATNPS 351
            I    E  ++ QL     ++  + + I + +++      N +F E +     A +  + +
Sbjct: 519  IRREAERELSTQLRFQSTLMDAIPLPIVVSNKDGRYLRLN-AFSEWITGRSWADIVGHTT 577

Query: 352  ND-ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
             +        SA    E+ + +          +     K+         +   V  N   
Sbjct: 578  TEVHFWGEANSARV--EEASQRAIDTGRLVQLQLQLQDKEGVERHFLLYIKPFVGENNVE 635

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI----KLSNPAFRSL 466
            G I    ++T     E +         +   +L   V      G +       +     L
Sbjct: 636  GLINTGVDVTEIRQAELEAREAQGRLADVTRYLPIMVFQARQSGHLGRGPIWVSGNTTDL 695

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +  +   L+                +           +   + E +      +L      
Sbjct: 696  FGVDAETLAVNPPTIEACVHPDDRMSLRRAIARARRELQVLNHEVRLR----KLEGFRWT 751

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRS 582
                +P       + +       +AE     AL    E+   A   K+SF+  +S+E+R+
Sbjct: 752  RLQAVPRIEIDGSVLWNGYWRDTQAEHERAAALASAKESAEAASRAKDSFLAMMSHEIRT 811

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            P+  ++G  +LL  +   SL  +QS  V  +  S++ LL +++DILD + ++AG + +  
Sbjct: 812  PMNGVLGLAELLSHT---SLTPEQSATVGMMGDSASALLQILDDILDYSKIEAGRIDIES 868

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
              + + +L +     +AT+ HE  + +++     + + V  D  RL Q+   +LSNA+ F
Sbjct: 869  RPLDIRELCDCTIGVLATRAHEKGLHLRLHVGADVAAVVLGDSVRLRQVLFNLLSNAIKF 928

Query: 702  SSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
            +  G    S  +++         + V + G  I       +F+ FV       RR  G G
Sbjct: 929  TESGMVSVSAEVVQETETAQTLRWRVTDTGIGIEPQNQSRLFDPFVQADTSTTRRFGGTG 988

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCR--IPSKE 792
            LGL+I    + L GG +++ S     T +     +P KE
Sbjct: 989  LGLAICRRLVQLMGGRITLKSEPGIGTQVEVELSLPVKE 1027



 Score = 39.9 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 33/243 (13%)

Query: 135 RKEGQSFDLVAETQN-DCAIKIEGRVSGSCAFLRILSLDGI--YSELAETTLKCKKLSNH 191
           R  G S+  V ET   +   +    + G    L IL         E +      ++LS  
Sbjct: 473 RYAGTSY--VLETSWLNALWRASPILIGMMVILLILLRSQRLYRKEASIRREAERELSTQ 530

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANI--------SYKKNTETEGIVFQKAIGESRKL 243
           +     L D++   +   ++ G  L  N         S+                 +   
Sbjct: 531 LRFQSTLMDAIPLPIVVSNKDGRYLRLNAFSEWITGRSWADIVGHTTTEVHFWGEANSAR 590

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-----KIVRVLNSFGEAGIAIDVSK- 297
            +E  ++ + +   ++          + G  + +       V   N  G     +DV++ 
Sbjct: 591 VEEASQRAIDTGRLVQLQLQL---QDKEGVERHFLLYIKPFVGENNVEGLINTGVDVTEI 647

Query: 298 ---EITVNDQLTHTYEILHNLTVAIAIFDQNRYL------QFHNRSFVELWEIDLAFLAT 348
              E+   +      ++   L + +    Q+ +L         N    +L+ +D   LA 
Sbjct: 648 RQAELEAREAQGRLADVTRYLPIMVFQARQSGHLGRGPIWVSGNT--TDLFGVDAETLAV 705

Query: 349 NPS 351
           NP 
Sbjct: 706 NPP 708



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +++ + E + +T ++ Q   +D +   + V   DGR    N AF             G  
Sbjct: 518 SIRREAERELSTQLRFQSTLMDAIPLPIVVSNKDGRYLRLN-AFSEWITGRSWADIVGHT 576

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
              +      ++ E++   +  A   + D  R
Sbjct: 577 TTEV-----HFWGEANSARVEEASQRAIDTGR 603


>gi|209523505|ref|ZP_03272059.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495910|gb|EDZ96211.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1391

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 125/647 (19%), Positives = 268/647 (41%), Gaps = 84/647 (12%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            L + G  +++++       L      F+ L +++  + +     G++++ + +Y++  + 
Sbjct: 552  LQVIGTKTDISDRKKNELALKESEEKFRQLAENIHQVFFINSATGEMIYVSPAYEEIWQQ 611

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET-----VSTLEHGNNKSYKIVRVL 283
                  K           E +  M  +   + +              +G+ +        
Sbjct: 612  SRDSLYKNPSSWLMSVHPEDRDGMAEALNKQISLGIPFNQTYRIVRPNGSIRWINCHAFP 671

Query: 284  NSFGE------AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                +       GIA D++             + + +                HN+    
Sbjct: 672  VRDNQGKIYRYTGIAEDIT-----------HRKTIEH--------------TLHNQ---- 702

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH---L 394
                    L       ++ + +R +  + E   + T  E I    K +     T+    L
Sbjct: 703  --------LRKTLIIQKITDNIRQSLDVQE--IFTTAVEEIGKALKVNCCLIHTYQKYPL 752

Query: 395  PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            P+G  L    + +P      + E++T   D   KY  LV+ +     H ++G+       
Sbjct: 753  PHGN-LVAKYSEHPCNLLCDLKESVTFDNDPYIKY--LVEQERAISYHKNDGLIKLS--- 806

Query: 455  RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
             IK+++P +++    EE+      +++++ A  + Y+ + +G           D  R   
Sbjct: 807  EIKITSPLWQTHQSFEES-----DNLKSMLAIATFYHGQPNGIISLHQ----CDHNRVWT 857

Query: 515  QGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
               +ELL ++V     I + +AQ +        +       L +  +  + A+  K+ F+
Sbjct: 858  LDEIELL-EAVARQLGIAIAHAQLLSQEKEQRQELTYKNIKLKKMTQEAKAANRAKSEFL 916

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             ++S+E+R+P+  ++GFTDLL+++     + K + Y++ I++S   LL L+NDILDL+ +
Sbjct: 917  ANMSHEIRTPMNAVLGFTDLLQSTI---TDPKATSYIKAIASSGRTLLALINDILDLSKI 973

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
            +AG ++L+Y  + +  ++NE++     K  E N+ ++V  D KL  S + D  RL QI  
Sbjct: 974  EAGKLQLHYEPVNIRTVINEIEHIFEQKASEKNLNLEVEVDPKLPYSIMTDEVRLRQILF 1033

Query: 693  KILSNAMDFSSKGST-VILKAAR-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
             I+ N++ F+  GS  +    ++       ++ D   ++ + G  I  +    +F+ F  
Sbjct: 1034 NIVGNSIKFTEFGSVRITASCSQLKPNHPYNSIDLKIAITDTGIGISREDQHKIFDSFTQ 1093

Query: 745  NA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +      +  G GLGL+I E  ++L GG + + S  +  +T    +P
Sbjct: 1094 SEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESERDQGSTFTVDLP 1140



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 103/336 (30%), Gaps = 20/336 (5%)

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
            G+ +  +             A D++        L  + E     L      +  ++   
Sbjct: 407 DGSYRWIEWRSTPVGDRIYAAARDITNRKKAEIALQESEERWQFALEGNGDGVWDWNVET 466

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELL----EFLRSANKLPEQLNWKTWKENIFSVY 382
              + +R + E+       ++ N    E L    + L+  + L + LN +T +       
Sbjct: 467 NQVYFSRRWKEILGFRAEEISDNLEEWEKLIHPDDKLQVFDILHKHLNGETEQYISEHRI 526

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           K  + H   W L  G+ ++  +   P    I    +++ +   E       +   +  ++
Sbjct: 527 KCKDGH-YKWILDRGRVMYRSLDGKPL-QVIGTKTDISDRKKNELALKESEEKFRQLAEN 584

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH--IRNIAATCSRYYNESDGWDLF 500
           + +   +    G +   +PA+  +W+   + L       + ++         E+    + 
Sbjct: 585 IHQVFFINSATGEMIYVSPAYEEIWQQSRDSLYKNPSSWLMSVHPEDRDGMAEALNKQIS 644

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             I  +         G++       +     P+ + Q  +            R      E
Sbjct: 645 LGIPFNQTYRIVRPNGSI-----RWINCHAFPVRDNQGKIYRYTGIAEDITHRK---TIE 696

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                   K   +Q ++  +R  L     FT  ++ 
Sbjct: 697 HTLHNQLRKTLIIQKITDNIRQSLDVQEIFTTAVEE 732



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 65/202 (32%), Gaps = 11/202 (5%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           A  LP     +++      +++    H   W    G+        N  G    +F ++T 
Sbjct: 259 AKILPALYAQESFIVEYRVIHRDGSIH---WVYEKGRG-KFDTQGNLIGIDGAIF-DITD 313

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           + + E   +   +          + + +   +GR    N  +          L     I 
Sbjct: 314 RQNTELALHQKTEELDRFFSIALDLLCIADVEGRFLRLNQQWEISLGYPLEELEGRLFIE 373

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +     +   +          + +F +  ++  G     S   +E+   P+ + +    
Sbjct: 374 FVHPDDVQPSLDHISNLCQQNSVLNFVNRYQAKDG-----SYRWIEWRSTPVGD-RIYAA 427

Query: 542 FVNVTDSVRAERALTEKNEALR 563
             ++T+  +AE AL E  E  +
Sbjct: 428 ARDITNRKKAEIALQESEERWQ 449


>gi|254447054|ref|ZP_05060521.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
 gi|198263193|gb|EDY87471.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
          Length = 821

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 3/256 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             ++   +      R    L + N+ L +AD +++ FV ++S+ELR+PL ++IGF+ +L 
Sbjct: 290 GGSLNNAMTYKMVQRQALKLEQANQELLEADRLRSEFVANMSHELRTPLNSVIGFSSVLM 349

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++  SL  K   +VE I  +   LL+L+NDILDL+ ++AG M++    +++ D++ +  
Sbjct: 350 KNRNQSLLEKDLNFVEKIHRNGKHLLSLINDILDLSKIEAGRMEVELRPVLVQDVVRDTS 409

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + + T+    N+ ++V     L     D  +L Q+   ++ NA+ F+ +GS V LK   +
Sbjct: 410 EMLQTQAEAKNVALRVEGQLDLPYIQTDGDKLRQVLINLVGNALKFTERGS-VTLKVGVE 468

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
           +      V + G  I ED   +VF  F         Q  G GLGL+I  S + +  G V 
Sbjct: 469 SQWLRIDVIDTGIGIAEDKLMTVFEPFRQADAGTTRQYGGTGLGLAITRSIVEMLDGRVE 528

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +T +  +P
Sbjct: 529 LDSVQGQGSTFSVYLP 544


>gi|306844607|ref|ZP_07477194.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            BO1]
 gi|306275051|gb|EFM56814.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            BO1]
          Length = 1036

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 125/728 (17%), Positives = 257/728 (35%), Gaps = 55/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G         +  +  E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGED------DILALSEEVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERTARPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETTVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L        +     S +   E       + +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRGAGGVDVLFNSESNDGETRQSMVLR-HAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +    H +      G+ L      V   + P    +    +   +  LE     L  
Sbjct: 607  GSEEPVNAHLNAIAWRGGRALMLSLMPVAAANLPVPAELPAASDDEEKQALEAHVEEL-- 664

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 665  --KTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 721

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 722  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 781

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 782  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 841

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 842  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 901

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 902  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 961

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 962  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1021

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1022 TVVEIVFP 1029


>gi|304311694|ref|YP_003811292.1| hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
 gi|301797427|emb|CBL45647.1| Hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
          Length = 1000

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/380 (23%), Positives = 156/380 (41%), Gaps = 18/380 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             ++   +    +     T ++  EG+     DGRI  +NPA   L   +    S    I
Sbjct: 473 EALEANERAVQNMARYRSTFNNAIEGMYRMSIDGRIVSANPAMAHLLGYD----SVDALI 528

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDE-----RKSLQGTLELLSDSVLEYSIIPLPN 535
                  +R +   DG     A       E     +      ++  S  +   + +P   
Sbjct: 529 AAGKEAVTRCFPGGDGQLQQLAFAGKLQLETCYTGKNGKSIWVDHFSQMIRGANGLPSHI 588

Query: 536 AQTMLTFVNVTDSVRAERALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             ++       +  RAE+         E    +   K  F+ ++S+ELR+PLT IIG+++
Sbjct: 589 EGSLTDITERKERERAEQDREIDKLEKELATASATAKGDFLANMSHELRTPLTAIIGYSE 648

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L    L + + +Q+  V+ I  SS  LLN++NDILD + V+A I+++    +    LL 
Sbjct: 649 SLNDQSLSATDEQQA--VDTIIRSSHHLLNIINDILDFSKVEASIVEVENVPLNPYLLLK 706

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVIL 710
           +V      K    N+  +V+    L     AD  RL QI   + SNA+ F+ +GS T+ +
Sbjct: 707 DVYSYFTQKARSQNLAFEVVYHFPLPNRIHADPTRLKQILLNLCSNALKFTKEGSVTIDV 766

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               +     FSV + G+ + E+    +F  +        R   G GLGL I +      
Sbjct: 767 GWDEERKLTRFSVIDTGAGLSEEQIGKLFQSYAQAEASTARQFGGTGLGLVISKQLAEKM 826

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + ++S     +     I
Sbjct: 827 GGTIEVTSEPGKGSCFTVYI 846


>gi|240142356|ref|YP_002966866.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240012300|gb|ACS43525.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 1072

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/519 (18%), Positives = 197/519 (37%), Gaps = 28/519 (5%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF--DQNR--YLQFHNRSFVELWEIDL 343
            A +A     E ++N+       +  +    + +   D      ++  N +  + +    
Sbjct: 301 VAMLADKARLEKSLNEAKALFLGVFDSSPEMLIVQYQDAEGQIRVETCNENAAQAFGRSQ 360

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                      +    +++  + E +      E++    +S    ++  H   G     I
Sbjct: 361 EACIGRTVESLI--RGKASRNVAEDI------EHVMRTGESVRRTREVRHRERGTIFEDI 412

Query: 404 VTS--NPRGGTIW----MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
                +P  G +        ++T ++  E              ++ ++ +  F    R  
Sbjct: 413 SVPLRDPSTGRVTRVLSSVRDITARLQAEKAVRVSEARLRLLAENTTDMIVEFDLGLRCT 472

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQG 516
             +PA R +       L       +     +     +    +      +    R     G
Sbjct: 473 YVSPASREIIGFAPAELVGTDPYEHCLQDDAPEIQRAVAPLIDGTFSHAASTHRALHRDG 532

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               +              A  + +  +VT+  +AE AL        +A   K+ F+  +
Sbjct: 533 RTVWIETRWSLVRSESGRPAGVVASMRDVTERKQAEIALVRAQAEAEQASAAKSDFLATM 592

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I G+  LL T     L ++  ++VE I  +S +L  +V+D+LD + ++AG
Sbjct: 593 SHEIRTPLNGIAGYAGLLMTE--DGLPARSRRHVERIQTASQVLKTVVDDVLDFSKIEAG 650

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKIL 695
            ++L  +T  L  L+++V   +   +  +   ++      L G++V D  RL QI   +L
Sbjct: 651 RVELVPTTFGLARLVDDVVAIVRGGVPADGPHVEGEIAPSLDGAYVGDENRLRQILLNLL 710

Query: 696 SNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
           +NA+ F+  GS     V L     +    FSV++ G  I  +  K +F +F         
Sbjct: 711 NNAVKFTPAGSVDLRIVDLGLEAGSRRLRFSVRDTGIGISPEQQKLLFRKFSQIDASNVR 770

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  G GLGL+I +  + L GG + +SSS    +  +  I
Sbjct: 771 RYGGTGLGLAISQRLVGLMGGAIEVSSSLGTGSEFSFEI 809


>gi|163846054|ref|YP_001634098.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523787|ref|YP_002568257.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667343|gb|ABY33709.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447666|gb|ACM51932.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 878

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 174/392 (44%), Gaps = 39/392 (9%)

Query: 424 DLETKYNTLVKVQGET------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + E +Y  L + Q ET      +  L +GV V    G +   NPA   +       L   
Sbjct: 494 EAERRYELLDRQQKETSQIAAILQSLLDGVIVCDLYGGVISINPAASRILHRPLEELLLW 553

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PN 535
                I      +  E    DL    + S + E ++   T  ++    + +S+ P+   N
Sbjct: 554 NLRDVIQRYLGSHAAELPLDDLLRRPL-SVNGEARTFTTTA-IVGGKTVNFSLSPVLKEN 611

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            + +   + + D  R   A           D +KN F+  +S+ELR+P+T I GFT LL 
Sbjct: 612 DELLGALLVLRDITREVEA-----------DRMKNEFIGTMSHELRTPMTAIKGFTQLLA 660

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              LG LN  Q ++V  I +++  ++NL+ND+L++  +++G + L + ++ L + L+ V 
Sbjct: 661 MGGLGQLNDTQREFVNTIYSNTERMINLINDVLEITKIESGSIDLEWRSLHLAEALSGVI 720

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
             +  ++ ++  ++ +     L    AD  RL QI   +L NA+ ++  G ++ + A   
Sbjct: 721 AELQPQITQHRHQLTISIPPGLPLIRADAMRLHQILYHVLLNAVKYTPAGGSITIAAREV 780

Query: 715 ---------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
                          +    + S+ + G  I  +    +F+RF    +  + +  G GLG
Sbjct: 781 MNIDIPEPIRSTLSDNRRYLLLSISDTGVGIRPEDLPRIFDRFFRGENLLKVEAGGTGLG 840

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSIV+  + L GG + + S+    +T +  +P
Sbjct: 841 LSIVKPLVELLGGRIWVESTVGVGSTFSIIMP 872


>gi|115523964|ref|YP_780875.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115517911|gb|ABJ05895.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 771

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/443 (22%), Positives = 183/443 (41%), Gaps = 41/443 (9%)

Query: 388 HKDTWHLPNGQTLHVIVT-SNPRGG------TIWMFENLTVQVDLETKYNTLVKVQGETI 440
           H       NG  + + V      GG       I +  ++T    L  +         + I
Sbjct: 319 HTFRMLHANGHWIWLRVRCEIGEGGGDAGLHLIGIAVDITEHKSLAERTVEADLRLRDAI 378

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-----CSRYYNESD 495
           + + E   ++  + R+ L N  F+ L +  ++ ++PGT    +              E  
Sbjct: 379 ETIPEAFVLWDAENRLVLCNSHFQRLHQLPDSAVTPGTSYDTVIEVGSMPEARTRSPECG 438

Query: 496 GWDLFAAIITSFDD--------ERKSLQGTLELL----------------SDSVLEYSII 531
           G  L A    +  D        ER++  G    +                +D  L  ++ 
Sbjct: 439 GAQLGARTFEAQLDNGQWLHISERRTKDGGYVAVGTDITRIKDHEHKLIDNDLRLRATVA 498

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            L  +Q  L    V  +  A R   E+      A++ K+ F+ ++S+ELR+PL  IIGF+
Sbjct: 499 DLKISQVKLERQAVQLADLA-RKYAEEKYRAEDANQTKSKFLANMSHELRTPLNAIIGFS 557

Query: 592 DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +++ +   G L + K  +Y   I  S   LL ++NDILD++ ++AG MKL+   +     
Sbjct: 558 EIMGSGMFGRLGSEKYQEYCHDILTSGHYLLEVINDILDMSKIEAGRMKLDLEPLDFAGT 617

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L+E  + ++ +     + +    +  + S +ADR+ + QI   +LSNA+ F+ +G  + +
Sbjct: 618 LSESLRVVSGRAENKQLELHADIEQGI-SVIADRRAVKQILVNLLSNAVKFTPEGGQITV 676

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
           +        +  + + G  I     + +   F            G GLGL+I +S  NLH
Sbjct: 677 RGRARADSIVLMIADTGIGIAPQSLRKLGQPFEQVESQLTKSYHGSGLGLAIAKSLTNLH 736

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG + + S     T +   +P +
Sbjct: 737 GGSMRLRSQLGQGTVVRLVLPRQ 759



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 13/159 (8%)

Query: 289 AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+D+++  ++ ++         + +  +  A  ++D    L   N  F  L ++  +
Sbjct: 351 IGIAVDITEHKSLAERTVEADLRLRDAIETIPEAFVLWDAENRLVLCNSHFQRLHQLPDS 410

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +    S D ++E       +PE               ++ E   D     NGQ LH+  
Sbjct: 411 AVTPGTSYDTVIEV----GSMPEARTRSPECGGAQLGARTFEAQLD-----NGQWLHISE 461

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                GG + +  ++T   D E K          T+  L
Sbjct: 462 RRTKDGGYVAVGTDITRIKDHEHKLIDNDLRLRATVADL 500


>gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 736

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/497 (16%), Positives = 186/497 (37%), Gaps = 32/497 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                ++  + V I   D +  + + NR    +       +      +++L   R    L
Sbjct: 104 HRLRGVVEAMPVMIHAHDASGAIVYWNRECERVTGYSALEMLGTSGKEDML--CRGKGCL 161

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GTIWMFE--NL 419
                   +       +   +  + T+   +G   +V++T         G  W     ++
Sbjct: 162 LGDGKCVNFP------WAELQEVEQTFRAKDGTIRNVLLTRVSGKASVPGWAWWMTGIDI 215

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGT 478
           T +   E +     +   +  D   + + +       +  +NPA  +L+      +    
Sbjct: 216 TDRRKTERRLAEREENYRKLFDSALDAIVIMDTQNSTVVDANPAALALFGYTREEMLGLP 275

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +   A+      +  +        +T     RK        +S +  E     L     
Sbjct: 276 SLALTASPKRAQESFDELMAKGTLPLTRARQRRKDGSTFHSEISAASFESFGRKLVCVFF 335

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTS 597
                 V   +R E A+ +      +++ +K+ F+ ++S+E+R+P+  +IG   + L + 
Sbjct: 336 RDVSSEVATKLRLENAVRQAR----RSNRVKSEFLANMSHEIRTPIAGVIGTAKMALASE 391

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           + G+    Q++ +  I  ++  LL++VNDILD++ ++A  ++          ++    + 
Sbjct: 392 RRGN----QAEQLRRIENAARSLLSIVNDILDMSKIEAKGLEFRAKDFSPEWVVCACVEE 447

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-- 714
                    + +    +  + + +  D  RLLQ+   ++ N++ F+ +G  + +   +  
Sbjct: 448 FTALAQAKGLDLAAYVEPDVPACMRGDPDRLLQVLRNLVGNSLKFTERGH-ITISVRQPE 506

Query: 715 --DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
             + G   FSVK+ G  IP++  K +F  F         + +G GLGLSI    +   GG
Sbjct: 507 KGETGLLYFSVKDTGIGIPKNRQKDLFKPFSQLDTTYAKRHQGTGLGLSISRRLVERMGG 566

Query: 771 HVSISSSDEGVTTINCR 787
            + + S     +     
Sbjct: 567 DIWVESERGQGSEFCFT 583



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 103/296 (34%), Gaps = 37/296 (12%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           L E     ++ S      + + +++  ++   D +G I++ N   ++ T    +      
Sbjct: 89  LDELREAAERRSEEEHRLRGVVEAMPVMIHAHDASGAIVYWNRECERVTGYSALEMLGTS 148

Query: 238 GESRKLFKEE----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA- 292
           G+   L + +       + ++    E    E     + G  ++  + RV       G A 
Sbjct: 149 GKEDMLCRGKGCLLGDGKCVNFPWAELQEVEQTFRAKDGTIRNVLLTRVSGKASVPGWAW 208

Query: 293 ----IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDL 343
               ID++       +L    E    +  +   AI I D QN  +   N + + L+    
Sbjct: 209 WMTGIDITDRRKTERRLAEREENYRKLFDSALDAIVIMDTQNSTVVDANPAALALFGYTR 268

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             +   PS       L ++ K  ++   +   +    + ++ +         +G T H  
Sbjct: 269 EEMLGLPSLA-----LTASPKRAQESFDELMAKGTLPLTRARQ------RRKDGSTFHSE 317

Query: 404 VT-----SNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
           ++     S  R      F +++ +V  + +            +V+ E + ++S  +
Sbjct: 318 ISAASFESFGRKLVCVFFRDVSSEVATKLRLENAVRQARRSNRVKSEFLANMSHEI 373


>gi|325262754|ref|ZP_08129490.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031848|gb|EGB93127.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 899

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/619 (16%), Positives = 225/619 (36%), Gaps = 50/619 (8%)

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-------KLFKEEIKKRMISSSAL 258
           ++  D    +L+AN  + K+T      F       R         F              
Sbjct: 10  IYIYDNDLSLLFANNQFYKSTGYTKEEFLTRFSSLRLYLKNYTTEFDNIKNSASEVLCKK 69

Query: 259 EKNFCETVS-TLEHGNNKSYKIVRVLNSFGEAGIAI------DVSKEITVNDQLTHTYE- 310
           E +F       L+ G +   +I          G  +      D+S  +  +++    ++ 
Sbjct: 70  EASFTADFPLPLKQGGHTWNRITGTFTGEISDGHPVISAVLTDISSLVAQSEEKVQYFQW 129

Query: 311 ILHNLTVAIAIFDQNRY-LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           ++      + I D + Y L + N   +E        ++     + +       +  P   
Sbjct: 130 MMDKYVGNVYISDMDTYELLYVNDEALETLRSTKEKVSGRKCYEAIQGR---TSPCPFCT 186

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           N +   +  +     +   K T+ + N + ++           I +  ++      E K 
Sbjct: 187 NDRLRTDEFYEWEFYNPVLKRTFMIKN-RLINWYGHK----ARIELSHDM---YSAEYKL 238

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIR------ 481
               + +   +  +  G           +      F  +    + +     H +      
Sbjct: 239 AKKDQERETLLRTIPGGFMRLDARDLSTVLWYGADFLRIIGYTKEQFETELHSQCSYIHP 298

Query: 482 ---NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                     +    +    +  A + +   E K+   TL    DS   +  IP   +  
Sbjct: 299 DDKERIHILLKKMQHTGRNTVTEARVITRSGEVKTQTLTL-YYEDSESSWDGIPSFYSVC 357

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    +  +  R  RAL +  +  + A+  K +F+  +S+++R+P+  I+G   + + + 
Sbjct: 358 IDVTEDRREQERQRRALEDAYQTAKVANSAKTNFLSSMSHDIRTPMNAIMGMAAIAQANL 417

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +   +    +  I+ SS  LL+L+N++LD++ +++G + L    + L +L+  V    
Sbjct: 418 --AEPERVRDCLNKINVSSRHLLSLINEVLDMSKIESGKIDLLPEEVNLPELIQNVSDMC 475

Query: 659 ATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--- 714
              + E  +  K+     +    + D  R+ Q+   +LSNA+ ++  G TV L+      
Sbjct: 476 KPLIAEKQLDFKISVSYVRHEKVITDGDRMQQVLMNLLSNAIKYTPDGGTVSLRIKEIPS 535

Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHG 769
                G F F V ++G  +PED    +F+ F         + +G GLG++I E+ + +  
Sbjct: 536 ITDKKGQFEFIVTDDGIGMPEDFIPLIFDPFSRAEDSRISKIQGTGLGMAITENIVRMMN 595

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + ++S  E  +T    +
Sbjct: 596 GSIEVTSQMEKGSTFTVTL 614


>gi|270294837|ref|ZP_06201038.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270274084|gb|EFA19945.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 462

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 91/426 (21%), Positives = 195/426 (45%), Gaps = 32/426 (7%)

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI-----WMFENLTVQVDLETKYNTLVK 434
            ++ ++ T ++   +P+G     +V  +   GT+     + F    ++   E      ++
Sbjct: 41  ELFDTAFTLQERLDIPDGFVQREMVYISILLGTLVLCLFFFFMQRRMKKLRERDRERYLQ 100

Query: 435 VQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           +    +D+L     V   +   R    N     L++         T    +    +    
Sbjct: 101 LLEGILDNLPIAAKVKDVNDGMRYTFWNKKAEELFECSAREAIGKTDFETMPEAAALIRK 160

Query: 493 ESD-------GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM--LTFV 543
           E +         +      T  ++ER + Q             + I L + +     T  
Sbjct: 161 EDEELVKTGIPQEGIRRFFTKKNEERFTFQNN-----------NFIKLSDGRKWIVYTAW 209

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    ER L    E   +++ IK++F+ ++S+E+R+PL  I+GF+ +L T       
Sbjct: 210 DITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILTTEVS---E 266

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y++ I  ++ +LL L+NDILDL+ ++AG ++  Y+ + +N +++E++Q+ + ++ 
Sbjct: 267 EERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSIRLT 326

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             ++R+  ++         D++R+ Q+F+  +SNA+ F++ GS  I     +N    F V
Sbjct: 327 NKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAAGSITIGYGMPENSYIRFYV 386

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G+ I  +  + +FNRFV       ++G GLGL+I ++ +    G + + S     +T
Sbjct: 387 TDTGTGISSENAQGIFNRFVKLDSF--KQGTGLGLAISQNIVKELKGEIGVESQLSKGST 444

Query: 784 INCRIP 789
               +P
Sbjct: 445 FWFTLP 450



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 15/161 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +E      L     IL NL +A  + D N      F N+   EL+E            + 
Sbjct: 91  RERDRERYLQLLEGILDNLPIAAKVKDVNDGMRYTFWNKKAEELFECSAREAIGKTDFET 150

Query: 355 LLEFLRSANKLPEQLNWKTW-KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           + E      K  E+L      +E I   +      + T+   N      I  S+ R   +
Sbjct: 151 MPEAAALIRKEDEELVKTGIPQEGIRRFFTKKNEERFTFQNNN-----FIKLSDGRKWIV 205

Query: 414 WMFENLTVQVDLETKYN-------TLVKVQGETIDHLSEGV 447
           +   ++T    +E K            +++   + ++S  +
Sbjct: 206 YTAWDITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEI 246


>gi|253699011|ref|YP_003020200.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251773861|gb|ACT16442.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 647

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 165/387 (42%), Gaps = 20/387 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-----RSLWKTEE 471
           + +  ++  E +           +      +       +    N  +     R++ +   
Sbjct: 26  QEIQERLRAEGQLAEARDHYLNILAEAPALIWRADTQAKCDWFNNTWLSFTGRTMEEEYG 85

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           +  + G H  ++    + +            +    +   +   G    + D    +S +
Sbjct: 86  DGWAQGVHTDDLERCVAIWLG-----AFHRKVPFEMEYRLRRHDGVFRWILDIGRPFSGL 140

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
               A  +    ++TD   AE  L    EA   A + K  F+ ++S+E+R+P+ +IIG T
Sbjct: 141 DGSFAGYIGYCFDITDRKGAEMELIVAREAAEAASKAKTEFLANMSHEIRTPMNSIIGMT 200

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  ++   L+++Q +YV+ I  SS  LL ++NDILDL+ V+AG ++L      L   +
Sbjct: 201 QLLAYTE---LSAEQKEYVDGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSLRQNI 257

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VI 709
           NE+ ++     HE  +++KV    ++  + V DR RL Q+    + NA+ F++ GS  V 
Sbjct: 258 NEIIRTQTAAAHEKGLQLKVFIPEEIPDALVGDRLRLKQVLLNTIGNAIKFTASGSIAVT 317

Query: 710 LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           +  A    D     FS+ + G  I  +    +F  F        RR  G GLGLSI    
Sbjct: 318 VALAEKQEDAARLTFSIADTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSISTKL 377

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + L GG +   S     +T +  IP +
Sbjct: 378 VRLMGGRIWAESRKNTGSTFHFEIPFR 404


>gi|300854424|ref|YP_003779408.1| putative phosphate regulon sensor protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434539|gb|ADK14306.1| predicted phosphate regulon sensor protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 574

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 169/395 (42%), Gaps = 36/395 (9%)

Query: 401 HVIVTSNPRGGTIW-MFENLTV--QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            V + S    G +   F  +    Q+ L+   +   K+    +  +  GV        I 
Sbjct: 202 RVRINSKDEIGELANTFNYMADALQITLKDSLDKQNKL-EAILKSMDSGVIAVDTKYNII 260

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           + NP  + ++  +++          I  +      + +  D+F ++   + + +      
Sbjct: 261 MINPYAKKIFGIKKDI---------IGESLIDNIRDFELEDVFKSMEDDYREIKILWPRE 311

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            EL   +   Y I        +    ++TD  + E               +++ FV +VS
Sbjct: 312 RELRIKTA--YIINSSKKIGKVAVIQDITDIKKLE--------------NMRSQFVANVS 355

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++PLT+I GF + LK          +++++  I+  +  L  L+NDIL L+ +++  
Sbjct: 356 HELKTPLTSIKGFAETLK---YVDDVENKNKFLNIINDEADRLTRLINDILTLSHIESNS 412

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +      + ++D++ +V   + T  ++ NI+I+ I D K+ S  AD  R  Q+   ++ N
Sbjct: 413 ID-KVEEVKIDDIVKDVCCMMKTAAYKKNIKIEKIGD-KVPSIWADADRFKQMAINLMDN 470

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           ++ +++ G TV +     + + +  V++NG  I ++    +F RF          + G G
Sbjct: 471 SIKYTNNGGTVKIGTMLQDNNCVLWVEDNGVGISKEHQSRLFERFYRVDKARSRNQGGTG 530

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL+IV+  +    G + + S     +    +IP 
Sbjct: 531 LGLAIVKHIVLGLSGTIDLQSEVGKGSKFTVKIPL 565


>gi|319411626|emb|CBQ73670.1| related to histidine kinase (C-terminal fragment) [Sporisorium
            reilianum]
          Length = 1516

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/751 (14%), Positives = 230/751 (30%), Gaps = 144/751 (19%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +S+          +    +LS    + + +F +++  +      G  +  N +  +  + 
Sbjct: 357  ISIVPTRLAERRMSPADLQLSKAEQLKEGVFHTIETAIMAMSSDGTTVIRNRACDEVLKI 416

Query: 229  EGIVFQKAIGESRKL------------------------FKEEIKK------RMISSSAL 258
                  +  G+S                           F E   +      R       
Sbjct: 417  FEKKDPQDKGKSAPPRKPKQGLAVDMSWLTDVMDCFTEDFSEPFPEENYPIYRASIHGQF 476

Query: 259  EKNFCETVSTLEHGNNKSYKIVR--------VLNSFGEAGIAIDVSKEITVNDQL----- 305
             K         + G  + Y+I               G     +DV+              
Sbjct: 477  TKPVRIGCVATDTGARRVYEISAKPMRDAGGFGEHIGGVITLVDVTDSEQKYRMEVEKKG 536

Query: 306  -THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
              +   I  ++   +        + ++N  +     + +  L T              + 
Sbjct: 537  EEYFRTICDSMPQMLWTAKPEGSVDWYNEGWPRFTGLSVQELLTRGWQHCF----HEDDM 592

Query: 365  LPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRGG--------TIW 414
            L     W           ++ E ++  +     +G    ++  + P              
Sbjct: 593  LETNARWS-------QSLRTGEPYQVMYRCKRYDGVWKWMLGRALPVRDPSTGKITKWYG 645

Query: 415  MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS--------------- 459
               +   +V                I+H    +     D  I ++               
Sbjct: 646  SCTDCDSEVKALEISRKSQAQLTSVINHAHVTIWAIDRDATITIAEGPGVRSLRLAPGTP 705

Query: 460  -----------------------------NPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                                         N    S   ++     PG      +      
Sbjct: 706  NGSDGDGSGSGNSLPGSVGAGTFNARSEENRDAESQTNSQSAVSGPGKRGNQRSMIGRSI 765

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA------------QT 538
            Y   D   +  AI  + + E    +  +E            P                  
Sbjct: 766  YEVWDSPGIREAIGRALNGESVVQEMEIE---GRWFRTQYTPQREESYEHDANEGAIIGV 822

Query: 539  MLTFVNVTDSVRAERALTEKNEA----------LRKADEIKNSFVQHVSYELRSPLTNII 588
            +   +++TD  RAE  L E               ++A  IK+ F+ ++S+E+R+P+  +I
Sbjct: 823  VGASMDITDRRRAEHKLEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVI 882

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            G ++LL  +    L+ +Q  + E I  S+  LL ++NDILD   ++ G M L  +   LN
Sbjct: 883  GLSELLCDT---PLSKEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLN 939

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++ + ++ +     +  +  +        G  V D  RL Q+ + +L+NA+ F++ G+ 
Sbjct: 940  VVIMDTQKMLTFATQKKGLEFRNECQLSFTGQIVGDAGRLRQVLTNLLTNAIKFAAAGAI 999

Query: 708  V--ILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
               +++   D       F V++ G  I +   K +F  F         +  G GLGLSI 
Sbjct: 1000 TLRVIETYEDQKSLHVHFEVRDTGCGISQTTLKKLFQPFSQADPSFARRFGGTGLGLSIC 1059

Query: 762  ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            ++ ++L GG + + S +   +     IP ++
Sbjct: 1060 KNLVDLMGGTIGLESVENKGSNAWFSIPFEK 1090


>gi|307822681|ref|ZP_07652912.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307736285|gb|EFO07131.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 872

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/635 (17%), Positives = 223/635 (35%), Gaps = 48/635 (7%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA------- 236
           +  +     +++  L  S    +   D   +  + N +  +    + +            
Sbjct: 120 RRNRTQAERNLYVSLAKSSTEFIGMCDTQLEPFFVNDAGLQLVGLDSLEQALKTPVKDFF 179

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY--------KIVRVLNSFGE 288
             E +    +E    ++  S  E          + G              +   +  FG 
Sbjct: 180 FPEDQAFIMDEFFPTVLRDSRAEIEIRFR--HFKTGEVLWMIFNVFALKDLHDNIVGFGT 237

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIA-----IFDQNRYLQFHNRSFVELWEIDL 343
                ++++   + + L  +   L++   A+A       D    +   +     ++    
Sbjct: 238 VST--NITEHKQIEEALRESQRDLNH-AQAVAHIGNWRMDIRNNILEWSDENFRIFGTPK 294

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-----YKSSETHKDTWHLPNGQ 398
               T  +    L+ +  A++   QL   TW++ +  +     ++     K  W     +
Sbjct: 295 ---GTPLTYQSFLDIVHPADR---QLVDTTWQQALTGMPYDIEHRLIVDKKVKWVRELAE 348

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            L         GG     E++T     +           + ID +   + V   +GR  L
Sbjct: 349 -LEFDKHGVLLGGF-GTTEDITDIKSTQEALQYERAFLRQIIDAVPSMIFVKDREGRFML 406

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SN A    + T    L+  T            +   +  D+          E K      
Sbjct: 407 SNEALAQCYGTSPESLTGLTDENFNPNADEVTHFYQNDLDVIRTGKPKLIPEEKVTHA-- 464

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                SV  YS + +P   T  +   +              E LR  D  K+ F+  +++
Sbjct: 465 ---DGSVHWYSTVKIPLCDTDNSCSKLLGVATDITERKHAEETLRLMDRRKDEFLAMLAH 521

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  I     LLK  +  + + K +     I    T +  L++D+LD+A +  G +
Sbjct: 522 ELRNPLAPIRNAVRLLKMQE--ATDPKLTLSCNIIDRQVTHMTRLLDDLLDMARIMQGKI 579

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L      L D++N   ++    +      + +           D  RL Q+ S +L+NA
Sbjct: 580 RLKIEHFELTDIVNNAIETSRPLLESRKQELIISQTMTPQWLEGDHVRLAQVLSNLLNNA 639

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
             ++ +G  ++L   R   D +  +K+ G  I  D+   +F+ F    H     + G+G+
Sbjct: 640 AKYTGEGGKIMLSVMRKGSDAVIEIKDTGIGISPDILPQIFDLFTQADHTLAHSQGGLGI 699

Query: 757 GLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
           GL++V   + +HGG V+ +S      +T   R+P+
Sbjct: 700 GLTLVRQLVEIHGGTVTAASEGIGQGSTFTVRLPA 734



 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 53/145 (36%), Gaps = 11/145 (7%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS----YKKNTET 228
           G   ++ +     + L    +  + + D++  +++ +D+ G  + +N +    Y  + E+
Sbjct: 362 GTTEDITDIKSTQEALQYERAFLRQIIDAVPSMIFVKDREGRFMLSNEALAQCYGTSPES 421

Query: 229 EGIVFQKAIGESRKLFKEEIKKRM-ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
              +  +    +        +  + +  +   K   E   T   G+   Y  V++     
Sbjct: 422 LTGLTDENFNPNADEVTHFYQNDLDVIRTGKPKLIPEEKVTHADGSVHWYSTVKIPLCDT 481

Query: 288 E------AGIAIDVSKEITVNDQLT 306
           +       G+A D+++     + L 
Sbjct: 482 DNSCSKLLGVATDITERKHAEETLR 506


>gi|309791480|ref|ZP_07685984.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226477|gb|EFO80201.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 690

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 161/400 (40%), Gaps = 13/400 (3%)

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +   LH+I  +  + G          ++  +       ++    +D   + + +   D  
Sbjct: 159 DAALLHLIGMATAQVGAAL------KRLQQQAAIAERERLLHLMLDAAPDAMLIADGDEH 212

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           + + N A   ++             R IAA  +  Y            + +  +     +
Sbjct: 213 VLVWNAAAERMFGYPAAEALGLPITRLIAARDAHTYFSLIADQRQGPTLDATIEVHARRR 272

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE--ALRKADEIKNSFV 573
              E  S+  L  +   L          +VT+  + + AL        L +  ++KN F+
Sbjct: 273 DGSEFPSEFGL-AAWRSLQGEYFTCVVRDVTERQQNQAALRTIEASTELERVAQLKNEFL 331

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PL  I+  T+ +     G LN +Q Q ++ ++ S   LL +VNDILD+  +
Sbjct: 332 ANMSHELRTPLNTILSLTEAVSEGVYGLLNDRQQQVLDVVTESGQHLLGIVNDILDMIKI 391

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG ++L    + +  +     + +    +   I+I    D ++    AD +RL QI   
Sbjct: 392 EAGKIELLIEPVEIESICAASMRMVRQIAYAKRIQIASQIDHQVDLIEADPRRLKQILVN 451

Query: 694 ILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RG 749
           +LSNA+ F+ +G  V L    D        SV++ G  I       +F  FV        
Sbjct: 452 LLSNAVKFTPEGGRVTLVVRGDAEAQLVYLSVEDTGIGIAHTDLPRLFRPFVQLDARLSR 511

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  G GLGL++V     LH G V I S+    +     +P
Sbjct: 512 RHEGTGLGLALVAHLTELHNGGVRIQSTPGTGSCFTIMLP 551


>gi|311235101|gb|ADP87955.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris
           RCH1]
          Length = 953

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 133/717 (18%), Positives = 254/717 (35%), Gaps = 79/717 (11%)

Query: 142 DLVAETQNDCAIKIEGRVSGSCAF-LRILSLDGIYSELAETT---LKCKKLSNHISVFK- 196
           D++A T +D  + + G+  G  A  +R  ++  + +E A              H    + 
Sbjct: 87  DILAGTCDDLLLPVSGQ--GGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRY 144

Query: 197 -VLFDSLDFLVWHRD--------QAGDILWAN--ISYKKNTETEGIVFQKAI-------- 237
             LF      +W +D                +   +Y +        F + I        
Sbjct: 145 AELFHLCPVPLWQQDVTEAQQAIDTLRTSGVHDLRAYFEAHPHVLAEFARRIRIVDANET 204

Query: 238 ------GESRKLFKEEIKKR------------MISSSALEKNFCETVSTLEHGNNKSYKI 279
                 G    L   ++  R            M++S A   +       L+ G       
Sbjct: 205 ASGLFAGCREDLLDPDLFMRLGMRQFVMELLVMLASGADRLSVEAACRALDGGERALQIE 264

Query: 280 VRVLNSFGEAGIAI-----DVSKEITVNDQLTHTYEILHNLTVAIA--IF--DQNRYLQF 330
            R++  FG  G+ +     D+++       L     ++  ++  +   ++  D      F
Sbjct: 265 ARLMPGFGLTGMRVIACGTDITERNRSQAALADFRNLVEAMSDNMIDMLWAKDTECRYIF 324

Query: 331 HNRSFVE-LWEIDLAFLATNPSND--ELLEFLRSANKLPE---QLNWKTWKENIFSVYKS 384
            NR+  E L   D   +         E    L   +   E     +    +      ++ 
Sbjct: 325 ANRAIRENLLHSDDERVLGRTDLHFAERQRHLGHEHTFGELCIDSDRVVLQTRTSGRFRE 384

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
               +  + + + Q   +        GT+    ++T+    E       ++   T++  +
Sbjct: 385 DGKVQGRYLMLDVQKSPLYDRQGKLLGTVGTGRDITLLKAQEDALLRSQQLLKWTVEAST 444

Query: 445 EGVAVFGPDGRIKLSNPAFRSL----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           + +  +       L N     L       +E          +         N   G   F
Sbjct: 445 DTIWQYDVVHDRFLCNNRCPGLLALSDAEDECHCRHRADPADAELLLHNLRNGQGGDKGF 504

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           +  +   DDE              V+EY     P    +    ++T+  R E  L +  +
Sbjct: 505 SMELRLRDDEGVWHWMYCR---GKVVEYDEEGRPTL-VVGANTDITERKRFETELRQARD 560

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               A++ K+ F+ ++S+E+R+PL  ++G   LL+      L S Q + +   S SS  L
Sbjct: 561 DAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLED---APLTSDQQELLHVASQSSRNL 617

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGS 679
           L ++NDILD   + +               L  V+ ++AT   + +IRI+          
Sbjct: 618 LTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAKDKDIRIETDISPNVPPL 677

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-----DFIFSVKNNGSSIPED 733
            + D  R  QI   ++ NA+ F+ +G+  + L     +        +  V+++G  IP+D
Sbjct: 678 LIGDVTRFRQILFNLVGNAVKFTQQGTVRISLHGLERHSPAGALRMLLMVEDSGIGIPQD 737

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           M  +VF  F  V  ++R +  G GLGL IV S ++  GG ++I S +   TTI C +
Sbjct: 738 MLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAIDSEEGAGTTIACTL 794


>gi|170739808|ref|YP_001768463.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168194082|gb|ACA16029.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 975

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 3/247 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  RAE +L +  EA   A   K+SF+ ++S+ELR+PL  IIGFT L+      +L +KQ
Sbjct: 455 ERKRAEESLRQAKEAAEDASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKEALPTKQ 514

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I ASS  LL+L+N ILDLA V+AG M++  S   L  +L+   +++   +    
Sbjct: 515 FENLEKILASSEHLLSLINSILDLAKVEAGRMEVKASEFALEPVLDLCLRTVEPLIKSEG 574

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+    +        D ++L QI   +LSNA+ F+  GS V L+         F+V + 
Sbjct: 575 VRLVRDVEDPPTMLRTDEEKLRQILINLLSNAIKFTEAGS-VTLRVRSAGEHVEFAVTDT 633

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP++   ++F+ F    +   R   G GLGL+I      L GGH+ + S     +T 
Sbjct: 634 GIGIPQEALSAIFDEFHQVDNSATRSHSGTGLGLAISHRLARLLGGHIDVESRVGQGSTF 693

Query: 785 NCRIPSK 791
              IP +
Sbjct: 694 TLSIPPR 700



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 73/259 (28%), Gaps = 5/259 (1%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
                 E + + +   A+FD +  L   N  F +        +    S   +      + 
Sbjct: 32  AKQKLIEAIESSSEGFALFDPDDRLVLCNDHFRDFHPGLAEVIVPGASFQTIARAAAESC 91

Query: 364 KL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
            +  E    + W     + Y+            +G+ + V       GG + ++ ++T  
Sbjct: 92  IVHKEGTTVEAWLAERMAHYREPRGSILQ-QRVDGRWVQVSERKTNDGGVVAVYTDVTEI 150

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR--IKLSNPAFRSLWKTEENRLSPGTHI 480
              E    T        +      +  F   GR      +   R L   E +    G   
Sbjct: 151 KRAEQVVLTTQGRLTYLLTASPSMICSFEVGGRNAPTFISENVRDLLGYEPSDYMAGPEF 210

Query: 481 R-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +      R    S+   L        +       GT   + D             + +
Sbjct: 211 WLDRLHPEDRDRVLSEFPRLLQQGHNVIEYRFLRADGTYRWVRDEQRLLRDPHGEPVEVV 270

Query: 540 LTFVNVTDSVRAERALTEK 558
            ++ ++T+   AE AL  +
Sbjct: 271 ESWSDITEHKEAELALQRQ 289


>gi|76800727|ref|YP_325735.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76556592|emb|CAI48163.1| signal-transducing histidine kinase; probable PAS/PAC domain
           protein [Natronomonas pharaonis DSM 2160]
          Length = 628

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/556 (18%), Positives = 222/556 (39%), Gaps = 29/556 (5%)

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
            E + +  + S A E    ETV     G+  ++++   +     A   +D +    V  +
Sbjct: 90  NERLARDALDSFAAEFVRSETVHG--DGDLLAHRVRTAI----SAATDVDAATHRDVEAR 143

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 +      A+ + D +  +   N   VE      + L +      + +F    + 
Sbjct: 144 RKRLRALFDKAPDAVVLHDADGAVLDVNERLVENLGYSRSELQS----MSVADFEAGHDI 199

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENL 419
              +  W           +       T    +G T  V +  N          +    ++
Sbjct: 200 ESLRAFWSELDVGETGTLEG------THRRADGSTFPVEIWLNKLEIDGEVQFLAFARDI 253

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T + + E+          + ID + + + V   +G   L+N      +    + +   T 
Sbjct: 254 TERKEHESALQRARDELRQIIDLVPDLLFVKDANGEYLLANETTADYYGLAPDEVVGRTD 313

Query: 480 IRNIA-ATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              +   T +  + E D   + +   T  D +E  +  G   +L  + + + +       
Sbjct: 314 AEVLPDETEAEAFREQDRHVIDSGEPTHVDREELTTADGETRVLETTKIPFEVAGTDETA 373

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    ++T+    ER L  +   LR+++E    F   VS++L+ PL  +  + DLL++ 
Sbjct: 374 VLGYARDITERDTYERELDARRRELRESNERLQQFAYVVSHDLQEPLRMVSSYLDLLESE 433

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+++  +Y+++    +  +  +++ +L  + V+    +   + +    +  E  + 
Sbjct: 434 YSDDLDAEAREYIDFAVDGAERMSRMIDALLSYSRVETRGEE--PAPVDAAAVFEEAHRD 491

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDN 716
           +  ++ E N RI+      L + +ADR +L Q+F  +LSNA++++  +   V +   R N
Sbjct: 492 LKQRIEETNARIE---ADDLPTVLADRSQLGQLFRNLLSNAIEYAGDEPPVVDVAVERQN 548

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G+++F+V + G  I E   + +F  F    +  +  G G+GL+I    ++ HGG + + S
Sbjct: 549 GEYVFAVADEGVGIHERDREDIFEVFQRGRNADRGSGTGIGLAICRRIVDRHGGDIWVDS 608

Query: 777 SDEGVTTINCRIPSKE 792
           +    TT    +P+ E
Sbjct: 609 TVGDGTTFYFTLPAPE 624



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 94/288 (32%), Gaps = 29/288 (10%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
           R R +++   +   +   ++  +  +  +L  +     ++ D      ++  +L + +  
Sbjct: 121 RVRTAISAATDVDAATHRDVEARRKRLRALFDKAPDAVVLHDADGAVLDVNERLVENLGY 180

Query: 106 PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAF 165
            +++   +S  ++   H    L     +L   G+       T      + +G       +
Sbjct: 181 SRSELQSMSVADFEAGHDIESLRAFWSEL-DVGE-----TGTLEGTHRRADGSTFPVEIW 234

Query: 166 LRILSLDGI------YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           L  L +DG         ++ E       L       + + D +  L++ +D  G+ L AN
Sbjct: 235 LNKLEIDGEVQFLAFARDITERKEHESALQRARDELRQIIDLVPDLLFVKDANGEYLLAN 294

Query: 220 ISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSALE-------KNFCETVSTLEH 271
              +   +  G+   + +G    ++  +E +                  +      T   
Sbjct: 295 ---ETTADYYGLAPDEVVGRTDAEVLPDETEAEAFREQDRHVIDSGEPTHVDREELTTAD 351

Query: 272 GNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
           G  +  +  ++       +     G A D+++  T   +L      L 
Sbjct: 352 GETRVLETTKIPFEVAGTDETAVLGYARDITERDTYERELDARRRELR 399


>gi|39934628|ref|NP_946904.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648477|emb|CAE26999.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Rhodopseudomonas palustris
           CGA009]
          Length = 903

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 109/600 (18%), Positives = 213/600 (35%), Gaps = 74/600 (12%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
           M    A +         + HG +  + I  +  + G   IA  +  +++  ++       
Sbjct: 45  MAGRIASQHTRAWEPPGVGHGLDVPWWIFVISLAVG-LSIAGLIELQLSRYERRNAHKLR 103

Query: 312 LHNLTVAI-----AIFDQ--NRYLQFHNRSFVELWEIDLA-FLATNPSNDELLEFLRSAN 363
             +L   +     AI  Q  +  +   N++   L+       +  N +   + + LR   
Sbjct: 104 QAHLAAIVEGSSYAIVGQSIDGTVLSWNKTAERLFGYTAEQAIGQNATELMVPDDLRDE- 162

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWH---LPNGQTLHVIVTSNPRG-------GTI 413
                      ++ + S           W      NG  + V V+ +P         G  
Sbjct: 163 -----------EQQMLSGISDGTAFAYLWTKRKRANGTLVDVAVSISPIRADDGRLIGMA 211

Query: 414 WMFENLTVQVDLETKYNTL------------------VKVQGETIDHLSEGVAVFGPDGR 455
               ++T  V  E + + L                  + +Q   ++  +  V      G 
Sbjct: 212 ASMRDITDLVQAEREVHDLNAALERQVAERTCQLEKTLTLQTAILERAAYAVIATDVTGT 271

Query: 456 IKLSNPAFRSLWKTEENRL------SPGTHIRNIAATCSRYYNE----SDGWDLFAAIIT 505
           I L NPA   +   +   L              +AA       E    S    +  A + 
Sbjct: 272 ITLFNPAAERMLGYKAEDLIGRASAMLFHDSDELAARAEAMRKEGISVSSNLGVLQARLA 331

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLP-----NAQTMLTFVNVTDSVRAERALTEKNE 560
             D +         + +      ++  L      N   +   V++T+ ++ E  L     
Sbjct: 332 RNDPDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAVDLTEQLKYEDELKAARA 391

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +  +A   K  F+ ++S+E+R+PL  IIG+ DL+   +  +L     + V  I  +S  L
Sbjct: 392 SAEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDE--TLAPDTRRQVMRIFEASDSL 449

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             +++DILD + ++A  + L    + +N+L+      I  K  E  +++   +       
Sbjct: 450 RVIIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIATAQATPPVL 509

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNG--DFIFSVKNNGSSIPEDMCK 736
           + D  RL Q+   +++NA+ F++ GS   ++    R +       SV + G  I  +  K
Sbjct: 510 IGDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVADTGIGISPEAQK 569

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRIPSKE 792
            +F RF         +  G GLGL+I +  +    G + I S     +T      +P  E
Sbjct: 570 GLFKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEVELPVAE 629


>gi|167036596|ref|YP_001664174.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039248|ref|YP_001662233.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|256751654|ref|ZP_05492529.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913888|ref|ZP_07131205.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307725427|ref|YP_003905178.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|320115023|ref|YP_004185182.1| ATP-binding region ATPase domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853488|gb|ABY91897.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|166855430|gb|ABY93838.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749463|gb|EEU62492.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890573|gb|EFK85718.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307582488|gb|ADN55887.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|319928114|gb|ADV78799.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 470

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 121/270 (44%), Gaps = 2/270 (0%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + L +  L    +   N    +      +     ++     + L + + ++  FV +VS+
Sbjct: 198 QPLKEMSLAVQQVAKGNFSARVQHKEEDEIGDLAKSFNIMAKELEQLENMRKDFVANVSH 257

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELRSPLT+I G+ D +    +     K   Y++ +   +  +  L++D L++  +++G  
Sbjct: 258 ELRSPLTSIQGYIDGILDGTIPK--EKACDYLKIVQKETRRMSRLIDDFLEMTKLESGQF 315

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+ +   +N+L+         ++ E ++ +KV  +      + D+ ++ Q+ + ++ NA
Sbjct: 316 PLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEEDRRIVIGDKDKIEQVLTNLIDNA 375

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + FS +   + +     +     ++K+NG  I  +  + +++RF        + G GLGL
Sbjct: 376 IKFSKEKGIIHIFTEIKDDKVFITIKDNGIGISPEDQEHIWDRFYKADKSRGKDGAGLGL 435

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IV+  IN H   + + S     T     +
Sbjct: 436 YIVKRIINAHNEEIWVESEVGKGTAFTFTL 465


>gi|328472789|gb|EGF43638.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 220]
          Length = 597

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 166/400 (41%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 222 RVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIIL 281

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I    +   N++               E+K  Q   
Sbjct: 282 SNPPAEEFLHNWFFSPENTEKVL-IPVALNELLNDTL--------------EKKESQVGE 326

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +D      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 327 ITFADHTYVAILTLLYTGEHVRSVVAVIRDMTEEKQL----------EKMKSDFVNNVSH 376

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 377 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 435

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 436 QMDNQKLPLAPLLRKVISNFDVLAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNA 495

Query: 699 MDFSSK---GSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  + K      VILK   D    + + +V +NGS I E+    +F RF       +R  
Sbjct: 496 IRHTGKEGYDGKVILKQTIDEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGK 555

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 556 AVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIITLPL 595



 Score = 42.6 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 106/322 (32%), Gaps = 52/322 (16%)

Query: 284 NSFGEAGIAI-DVSKEI-----TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  GE G+A  D++K++      +  +      IL  +   +  F  ++ +   N    E
Sbjct: 229 DEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEE 288

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
              +   F +   +             +P  LN     E +    +  E+        + 
Sbjct: 289 F--LHNWFFSPENT---------EKVLIPVALN-----ELLNDTLEKKESQVGEITFADH 332

Query: 398 Q---TLHVIVTSNPRGGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHL 443
                L ++ T       + +  ++T +  LE            +  T + +     + +
Sbjct: 333 TYVAILTLLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI 392

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY--YNESDGW---- 497
            +GVA    + R       F  +    +  L  G  + ++         +N+ D      
Sbjct: 393 IDGVAQSDEEVR------EFAQI--IYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 444

Query: 498 -DLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             L   +I++FD   K     L L  ++  LEYS  P    Q ++  +        +   
Sbjct: 445 APLLRKVISNFDVLAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 504

Query: 556 TEKNEALRKADEIKNSFVQHVS 577
             K    +  DE +++ V  VS
Sbjct: 505 DGKVILKQTIDEARSNLVITVS 526


>gi|298241407|ref|ZP_06965214.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297554461|gb|EFH88325.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1101

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 116/782 (14%), Positives = 254/782 (32%), Gaps = 76/782 (9%)

Query: 49   NSLAKKVNETYSFLSEICDQLSK--YHSLLTENNCLTIVWD-GKDETPEIIGQLHQRIDI 105
                   +      +E   + S+     L        +VW  G D   +   Q  +  D 
Sbjct: 352  KWFGTNTDIDEQKRAEQRIKASRENLRVLAETVPQ--LVWSTGPDGLTQDWNQ--RYADY 407

Query: 106  PQTDTDLLSFENW---LKFHHYIKLSKATEKLRKEGQSFDLVAETQND-----CAIKIEG 157
             Q   + L    W   L    Y  +    ++  + G+ + +    +              
Sbjct: 408  FQATPEQLRGYGWRQFLDPEEYDHVCTVRDRSLETGEPYAIEYRLKEGKTGSYRWFLARA 467

Query: 158  RVSG---SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
                              G  +++ +     ++L    + ++VL +++  LVW     G 
Sbjct: 468  MPVRDDVGQIVKWF----GTCTDIEDQKRAEQQLKTSEANWRVLAETVPQLVWTTRADGL 523

Query: 215  ILWANISYKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
              + N  +   T        G  + + +           +     +    +         
Sbjct: 524  SDYFNQRFCDYTHATWEQLYGYGWSQFVHPEDYEHTLAARTHAFRTGTPHEVAY-RFREG 582

Query: 270  EHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF- 322
            + G  + +  + + V +  G+     G A D+ ++     ++  + E L  L   +    
Sbjct: 583  QTGRYRWFLARAMPVRDETGQIVKWFGTATDIDEQKRAEQKIKESEENLRVLAETVPQLV 642

Query: 323  ---DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL---EFLRSANKLPEQLNWKTWKE 376
                 +   ++ N+ + +   +    + +N      L   +       L +  +      
Sbjct: 643  WSTGPDGLHEYTNQRWRDYTGLTPEQVQSNRWAHLQLIHPDDREGTRALWQHAHDTGAMY 702

Query: 377  NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
                  ++ +T    W L   + + V   +      I    ++  Q  +E       +  
Sbjct: 703  EREERLRNGQTGAYRWFLV--RAIPVRDEAGQIVKWIGTGTDIEDQKRIEEALRQSQERA 760

Query: 437  GETID------HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
               ++      +++EG  +         +N  F  +       L  G  I  +  T   +
Sbjct: 761  STLMNSNIIGTNIAEGEQIVD-------ANDTFLRMTGYTREDLRAG-RINWMRMTPPEF 812

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               +       A   S     K           S L   +  +         +       
Sbjct: 813  LARTQQAHEELATQQSMPPYEKEYM----CKDGSRLPVLVGRVVLEHHPSQAIGFVLDNS 868

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L          ++ K+ F+   S+ELR+PL  +   T L++       + + +  +
Sbjct: 869  ARKEL----------EQRKDDFISMASHELRNPLAAVKMQTQLVRKRLERQSHHEAATAL 918

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              +      L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   
Sbjct: 919  SRVEGPVKQLERLIGELLDVSKIQAGRLEYVRETVDLDALLHEVADTMQQLSTTHTI--- 975

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            V+        V D+ RL Q+F+ ++SNA+ +S    TV +  +         V ++G  I
Sbjct: 976  VVRGAAPRLLVGDKDRLGQVFTNLISNAIKYSPGAETVEMDLSASEERVTVRVHDHGLGI 1035

Query: 731  PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            P +    +F RF       Q+   G+G+GL IV   +  H G +++ S     +T    +
Sbjct: 1036 PREQRDKIFERFYRATGPKQKAIPGLGMGLYIVTEIVKRHEGTITVDSEVGKGSTFTVTL 1095

Query: 789  PS 790
            P 
Sbjct: 1096 PL 1097



 Score = 77.7 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/414 (12%), Positives = 121/414 (29%), Gaps = 54/414 (13%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGIVFQKAI 237
               +  +     + L  ++   VW     G   + N  +   T     + +G  + +AI
Sbjct: 238 RDITERKHAEDELRTLVAAIPQHVWMNRPDGSRDYCNRRWCDYTGMTSEQAQGDGWLQAI 297

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA------GI 291
               +    E+ +R + +    +     +     G  + +    + +   +       G 
Sbjct: 298 HPDDQQRILEMWQRAVQTCMPYEVEL-RLRQGTSGEYRWFLAQAMPHKDDQGTILKWFGT 356

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLA 347
             D+ ++     ++  + E L  L   +         +   Q  N+ + + ++     L 
Sbjct: 357 NTDIDEQKRAEQRIKASRENLRVLAETVPQLVWSTGPDGLTQDWNQRYADYFQATPEQLR 416

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIV 404
                 + L+        PE+  +           ++ E +   + L  G+T      + 
Sbjct: 417 GY-GWRQFLD--------PEE--YDHVCTVRDRSLETGEPYAIEYRLKEGKTGSYRWFLA 465

Query: 405 TSNP---RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            + P     G I        ++  Q   E +  T         + + + V     DG   
Sbjct: 466 RAMPVRDDVGQIVKWFGTCTDIEDQKRAEQQLKTSEANWRVLAETVPQLVWTTRADGLSD 525

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD----DERKS 513
             N  F         +L             S++ +  D     AA   +F      E   
Sbjct: 526 YFNQRFCDYTHATWEQLYGYG--------WSQFVHPEDYEHTLAARTHAFRTGTPHEVAY 577

Query: 514 LQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
                +           +P+ +      +   T  ++ +  RAE+ + E  E L
Sbjct: 578 RFREGQTGRYRWFLARAMPVRDETGQIVKWFGTATDIDEQKRAEQKIKESEENL 631



 Score = 46.5 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 11/150 (7%)

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             L  A  + D    + + N S   L       L    S       L S +        K
Sbjct: 16  ETLPDAFFVVDDTEAIVYANASAQTLTGTPREELCGT-SLWSGAPHLVSPSLYQAVQKAK 74

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
             +E     Y S  TH         + LHV ++    G    +F+     + L+   +  
Sbjct: 75  QTREPSEVEYVSPATH---------RWLHVSLSPTDEG-LALLFQEQLEPLPLQDALSRN 124

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
            ++  + ++  ++GV +  P+G +   N  
Sbjct: 125 EQMYRDLLESFADGVTIVTPEGLVLDINQR 154


>gi|124268351|ref|YP_001022355.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124261126|gb|ABM96120.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 1077

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 154/386 (39%), Gaps = 17/386 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +T ++  E       +      + +  GV      GRIK  N A+ ++    E  L  
Sbjct: 547 HEITERLATEQALRESEQRFRSIFNSVPIGVVYTDLQGRIKQPNAAYCTMTGYSEEELLS 606

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            +          R  + +   DL    +  +   ++ +     +L    +  ++  L + 
Sbjct: 607 LSLASL-THPEDRAADLASQQDLVDGRLPLYRRRKRYVTRNGPVL---WVSVTVSLLRDE 662

Query: 537 QTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                       ++++ +R E A     E+   A+  KN F+  +S+ELR+PL  ++GF 
Sbjct: 663 HGQPHRLVGLVEDISEHLRLEEA-EHARESAETANRAKNEFLSRMSHELRTPLNAMLGFA 721

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL   +   L+ +   +V  I  +   LL ++ND+LDL+ +++G + L   ++ L  L+
Sbjct: 722 QLLDLDRGEPLHERHRMWVTQIQQAGWHLLEMINDVLDLSRIESGTLSLQVESLSLEPLI 781

Query: 652 NEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
                 +  +     + + + +++      + D  R+ QI + +LSNA+ ++ +   V +
Sbjct: 782 AASMALVEPQARGRGLTLVRTMAEHAPLQVLGDATRVKQILTNLLSNAVKYNREAGEVRV 841

Query: 711 KAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESF 764
              R             V + G  I   +   +F  F      RG   G G+GL I +  
Sbjct: 842 STRRTEDRDGTPMLELDVCDTGLGIEPQLLTQLFQPFNRLGRERGATEGTGIGLVIAKLL 901

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
               GG + + S     +T   R+P 
Sbjct: 902 AERQGGSLKVRSEPGVGSTFTLRLPL 927



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 84/252 (33%), Gaps = 21/252 (8%)

Query: 205 LVWHRDQAGDILWANISYKKNTETE-GIVFQKAIGESRKLFKEEIKKRMIS-SSALEKNF 262
            +W       I +A  +++   +   G+    A G    L  E     + S +  L    
Sbjct: 465 PLWSHTAE--IPFAGRTWELRVQAPNGVPNGPAAGP---LSGESATAWLFSLTGLLGTGM 519

Query: 263 CETVSTLEHGNNKSYK-IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI 321
              +  L  G  +  +  V       E  I   ++ E  + +       I +++ + +  
Sbjct: 520 MGALLLLVTGRTRQTETAVAERTEQLEHEITERLATEQALRESEQRFRSIFNSVPIGVVY 579

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
            D    ++  N ++  +      +      +  L       ++  +  + +   +    +
Sbjct: 580 TDLQGRIKQPNAAYCTMTG----YSEEELLSLSLASLTHPEDRAADLASQQDLVDGRLPL 635

Query: 382 YKSSETH--KDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETKY------NTL 432
           Y+  + +  ++   L    T+ ++   + +    + + E+++  + LE          T 
Sbjct: 636 YRRRKRYVTRNGPVLWVSVTVSLLRDEHGQPHRLVGLVEDISEHLRLEEAEHARESAETA 695

Query: 433 VKVQGETIDHLS 444
            + + E +  +S
Sbjct: 696 NRAKNEFLSRMS 707


>gi|304309810|ref|YP_003809408.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
 gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
          Length = 816

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 11/252 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            + D  + +          +     K+ F+  +S+E+R+P+  +IG  DLL+ +K   L+
Sbjct: 393 QINDLRKQQVQSLLAAREAQTESRAKSQFLAQMSHEIRTPMNGVIGMADLLRQTK---LD 449

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q QY++ I  S   LL ++NDILD + + AG M L    I    ++ E  Q       
Sbjct: 450 VQQKQYLDIIVNSGRTLLTIINDILDFSKIAAGKMDLEIRPIDFKQIVRECIQLFTLPAE 509

Query: 664 ENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGD 718
           E  I +K    +G       D  RL Q+ + +LSNA+ F+ KG  + L+           
Sbjct: 510 EKAIYLKKDWKEGASPIIYGDSTRLRQVLTNLLSNALKFTEKGG-ITLRVKPCLRDSEPY 568

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V++ G  I  +  + +F+ F        RR  G GLGL+I +  + L GG + + S
Sbjct: 569 LQVEVEDTGIGISVENQQRLFSAFSQAEASTTRRFGGTGLGLAISKQLVELMGGEIGVRS 628

Query: 777 SDEGVTTINCRI 788
            +   +     +
Sbjct: 629 EEGVGSIFWFTL 640


>gi|254714821|ref|ZP_05176632.1| sensory box histidine kinase [Brucella ceti M644/93/1]
 gi|254717879|ref|ZP_05179690.1| sensory box histidine kinase [Brucella ceti M13/05/1]
 gi|261219725|ref|ZP_05934006.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M13/05/1]
 gi|261322615|ref|ZP_05961812.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M644/93/1]
 gi|260924814|gb|EEX91382.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M13/05/1]
 gi|261295305|gb|EEX98801.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M644/93/1]
          Length = 1035

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTLPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|110803461|ref|YP_698636.1| sensory box histidine kinase [Clostridium perfringens SM101]
 gi|110683962|gb|ABG87332.1| sensory box histidine kinase [Clostridium perfringens SM101]
          Length = 787

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 166/381 (43%), Gaps = 9/381 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    ++T +  +E       +      +++ + +     +G+I   N A   +    E 
Sbjct: 378 VLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEE 437

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L    +   +    +    +S  ++    +       +K L   LE +S  + +     
Sbjct: 438 ELIGKNYYDLLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQ-LESISSRIKDNK--- 493

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N    +      + VR    L  K E +++ D++++ F  ++S+ELR+P+  I     
Sbjct: 494 -NNTLGWVRVARNIEDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQ 552

Query: 593 LLKTSKLGSLN--SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           LL TSK    N  +   +Y + +  +   +L LVN+++D+  +D+G +K+++    +  L
Sbjct: 553 LLNTSKKNKANFVNLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKL 612

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             ++  S+   +   NI I   ++ +      D  ++ +I   +LSNA+ F+  G  + +
Sbjct: 613 TEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEV 672

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
               D       VK+ G  IP  M + +F RF+ N       + G G+GLS+V+S + LH
Sbjct: 673 SILIDETWVDIRVKDTGIGIPSHMKEFIFGRFIQNDKSLNRNKEGSGIGLSLVKSLVELH 732

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G V +  S+E  +  +  +P
Sbjct: 733 EGKVFLRESNESGSEFSILLP 753


>gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 597

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 150/369 (40%), Gaps = 23/369 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K     +        + E + V    G I L NP+   L++ E              + 
Sbjct: 241 KKKRRSEEWYRAVFSGIREAILVTDAAGDIILVNPSASRLFRLEGAMFQ---------SR 291

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +   ++     L   +  S     K       L    +L+ S +P+         V V 
Sbjct: 292 STALVSDEGLRTLLQRVHGSKKAIVKEEMTVTTLKGKRILQISSMPVMREGVFDGTVFVL 351

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +   R L          + I+  FV  VS+ELR+PLT+I G+T+ L    +      +
Sbjct: 352 NDITRLRNL----------ERIRRDFVSSVSHELRTPLTSIRGYTETLLDGAMHDAEHTE 401

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + ++  I   S  L  LVND+LDL+ +++G ++ +++ + L +++     ++A +  + +
Sbjct: 402 A-FLRIIHQESEQLTALVNDVLDLSKIESGRIEYSFAPVSLMEVVERSMSTLAPQFAKKD 460

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFIFSVKN 725
           +R+ +     L     D   L  +   +L NA+ +  +    + L AA+ +G     V++
Sbjct: 461 VRLDLSIPADLPLVRGDASYLEIVVRNLLDNAVKYVDEHNGRIRLSAAKRDGFVTLEVED 520

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  I +     +F RF        R   G GLGLSIV+  +  H G + + S     T 
Sbjct: 521 NGIGIAQKDLDRIFERFYRVDKARSRQLGGTGLGLSIVKHIVLAHKGDIKVRSRLNRGTA 580

Query: 784 INCRIPSKE 792
               +P  +
Sbjct: 581 FTLTLPVAD 589



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +             +   +  AI + D    +   N S   L+ ++ A   +  +    
Sbjct: 238 EEIKKKRRSEEWYRAVFSGIREAILVTDAAGDIILVNPSASRLFRLEGAMFQSRSTALVS 297

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            E LR+  +          KE +       +       +P       ++      GT+++
Sbjct: 298 DEGLRTLLQRVHGSKKAIVKEEMTVTTLKGKRILQISSMP-------VMREGVFDGTVFV 350

Query: 416 FENLTVQVDLETKYN 430
             ++T   +LE    
Sbjct: 351 LNDITRLRNLERIRR 365


>gi|311747467|ref|ZP_07721252.1| putative sensory box histidine kinase/response regulator
            [Algoriphagus sp. PR1]
 gi|311302668|gb|EFQ79250.1| putative sensory box histidine kinase/response regulator
            [Algoriphagus sp. PR1]
          Length = 1283

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 110/522 (21%), Positives = 210/522 (40%), Gaps = 58/522 (11%)

Query: 294  DVSKEITVNDQLTHTYEILH-NLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            D  K   +N++    Y IL  N+    + + D+ R       +  E W +          
Sbjct: 775  DRKKLEDINEERDRQYRILASNIPGTNVFLLDKERKYIVAEGTNFENWGMTREDFEGK-- 832

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSV--YKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                  FL   +  P +       +  +     +S     D ++    ++   IV ++  
Sbjct: 833  ------FLWEVHVTPYEEVNALLDQVYYDRQFLESEFAFGDRYYA---RSFRPIVINDQV 883

Query: 410  GGTIWMFENLTVQ-------VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               + +  ++T +       +  E KY TLV+   E I  L+E                 
Sbjct: 884  EFVLSIIRDITDEHQAKINLLQSEEKYRTLVEESTEIIFSLTE----------------K 927

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII---TSFDDERKSLQGTLE 519
            F   + +   +   G    ++       +   D    F  I+     F  + + L+  L 
Sbjct: 928  FELQYVSPNVQQFLGYKASDVIGKSIFEFLNPDDMGEFEKILGDNQDFLAQNQFLEFRLR 987

Query: 520  LLSD--SVLEYSIIPLPNAQTMLTFVNVTDSV-----RAERALTEKNEALRKADEIKNSF 572
             L+    V       + + +   +F             A++ L +  E   +A  +K+ F
Sbjct: 988  HLNGDYRVFNSHGKLIEDKEGNPSFYTGIARDVSKLKEAQKELVKAKENAEQASLVKSQF 1047

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            +  +S+E+R+P+  +IG + LL         + Q + ++ +  S+  L+ L+NDILD   
Sbjct: 1048 LSIMSHEIRTPMNAVIGLSHLLMQE---DPRADQLENLKTLQFSAENLMALINDILDYNK 1104

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIF 691
            +D+G ++L    + L +L+  +  S + + +E ++R+  + D  L    + D  RL QI 
Sbjct: 1105 IDSGKVELEELPLDLKNLVTRIVHSHSFQANEKDLRLSCLIDPDLPQKLLGDSVRLGQII 1164

Query: 692  SKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            + +LSNA+ F+ KG  T+ L             F   + G  +PED  +S+F  F   + 
Sbjct: 1165 NNLLSNAIKFTDKGEVTIKLSHEILEKGICRVNFECIDTGIGVPEDKKESIFEAFTQASS 1224

Query: 748  RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGL+IV+  +NL+GG + ++S+  G +T    
Sbjct: 1225 STTRKYGGTGLGLAIVKRLVNLYGGDIEVNSNISGGSTFKFY 1266



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 74/232 (31%), Gaps = 18/232 (7%)

Query: 277 YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           Y+I       G      GI  DV+ +    +QL    +IL  +   I + D  + L + N
Sbjct: 502 YEIDVPSGGMGHQIEVVGICTDVTHKKATEEQLVLQSQILAQVKDPIVVTDLEQELIYAN 561

Query: 333 RSFVELWEIDLAFLATNP---SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            + ++L +  +  +         +      +    +P+      W++ +    K ++   
Sbjct: 562 EAALKLCDKTVNDVCKGKIAEFFEFENHEEKLEEIIPKIEEGNIWQDEVNLKIKGNKAEP 621

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
               +       +    N + G   + +NL+ + + +     L       +++    +  
Sbjct: 622 FEVSIK-----AIHSDQNQKIGYSLVLQNLSEKYEAKK----LANRAKMIVENSPVVLFR 672

Query: 450 FGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
             P  D RI   +          +  +     I ++       +      ++
Sbjct: 673 IDPNDDFRIVYISDNVARFGYNAQQLVESKKSILDLLYAEDARHIREKSKEI 724


>gi|254512446|ref|ZP_05124513.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
 gi|221536157|gb|EEE39145.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
          Length = 748

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 162/378 (42%), Gaps = 15/378 (3%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K     +    +I  + +G A F  +  +  +N A+ S++   E      T+ R +   
Sbjct: 83  AKIEVAERRLWHSIQTIPDGFAFFDGNNTLIGANAAYLSVFDGLEEVAPGITYPRLLEIL 142

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQG--TLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                 +         +    D   +       ++L +   +            +   +N
Sbjct: 143 TCEGIVDIGADRTEDWLARMLDRWAQPHPEPMVIQLWNGQYIRLIDQRGHGGDVLSLALN 202

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T +VR E  L    E    A+  K++F+ ++S+E+R+P+  I+G T+LL  +    LN 
Sbjct: 203 ITATVRHEAELNAARERAEAANRAKSAFLANMSHEIRTPMNGIVGMTELLTET---PLNE 259

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  Y+  I  S   LL ++ND+LD + ++A  + L+     L   + EV   +   + +
Sbjct: 260 EQRLYISTIRNSGEALLVIINDVLDYSKIEADKLTLHPEQFDLERCILEVAMLLQPSVRD 319

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILK----AARDNGD 718
             + + V  D  L + FV D  R+ QI + ++ NA+ F+++G   V +     A+  + D
Sbjct: 320 KGLTLLVDYDLFLPTLFVGDPGRIRQILTNLVGNAVKFTAQGHVLVRVTGVPDASAQSCD 379

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              ++++ G  I  D    +F  F    +A   Q  G GLGL+I +  I + GG V + S
Sbjct: 380 IHVAIEDTGIGIEADKIAHIFGEFNQIEDAQNRQFEGTGLGLAITKRLITMMGGTVWVES 439

Query: 777 SDEGVTT--INCRIPSKE 792
                +       +P+ E
Sbjct: 440 DVGRGSCFGFRISLPTAE 457



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 70/203 (34%), Gaps = 5/203 (2%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
            E +  ++    + +      +  + +++         ++            VR  N   
Sbjct: 15  AEKLAQERRARLAAERLLHLKQAELSAANRKLGRHAIALTRQIDETQAEVATVRDENEKV 74

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           ++ + +  +K      +L H+ +    +    A FD N  L   N +++ +++  L  +A
Sbjct: 75  KSDLTMAHAKIEVAERRLWHSIQT---IPDGFAFFDGNNTLIGANAAYLSVFD-GLEEVA 130

Query: 348 TNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              +   LLE L     +    +  + W   +   +           L NGQ + +I   
Sbjct: 131 PGITYPRLLEILTCEGIVDIGADRTEDWLARMLDRWAQPHPEPMVIQLWNGQYIRLIDQR 190

Query: 407 NPRGGTIWMFENLTVQVDLETKY 429
              G  + +  N+T  V  E + 
Sbjct: 191 GHGGDVLSLALNITATVRHEAEL 213


>gi|296329975|ref|ZP_06872459.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305676700|ref|YP_003868372.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153014|gb|EFG93879.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305414944|gb|ADM40063.1| two-component sensor histidine kinase (paired with YycF) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 611

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/416 (22%), Positives = 163/416 (39%), Gaps = 32/416 (7%)

Query: 385 SETHKDTWHLPNGQTLH-VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETID 441
           S+  K    L  G     V    +   G +   F +LT ++ D +       +     I 
Sbjct: 211 SDMRKQAMELAKGNFSRKVKKYGHDEIGQLATTFNHLTRELEDAQAMTEGERRKLASVIA 270

Query: 442 HLSEGVAVFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           ++++GV     +G I L N PA   L  + E  L     I ++      Y         F
Sbjct: 271 YMTDGVIATNRNGAIILLNSPALELLNVSRETALEM--PITSLLGIQENY--------TF 320

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             ++   D     ++   EL    V  +S+I   + +       + D    E        
Sbjct: 321 EDLVEQQDSMLLEIERDDELTVLRV-NFSVIQREHGKIDGLIAVIYDVTEQE-------- 371

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              K D+ +  FV +VS+ELR+PLT +  + + L      + +    +++      +  +
Sbjct: 372 ---KMDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDI-APRFLMVTQNETERM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + LVND+L L+  D+   + N   I +   ++ +         E ++        +    
Sbjct: 428 IRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFE-MTKEQHVEFIRNLPDRNLYV 486

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             D+ ++ Q+   I+SNA+ +S +G  V   +    +      SVK+ G  IP+   + V
Sbjct: 487 EIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKV 546

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF        R   G GLGL+I    +  HGG +   S +   TTI   +P KE
Sbjct: 547 FDRFYRVDKARTRKLGGTGLGLAIAREMVQAHGGDIWADSIEGKGTTITFTLPYKE 602


>gi|254457575|ref|ZP_05071003.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207086367|gb|EDZ63651.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 736

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 6/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  + +    A +IK+ F+ ++S+E+R+P+  I+G T L   +    LN KQ  Y++ 
Sbjct: 272 KELEIEKKKAEDATKIKSEFLANMSHEIRTPMNGILGMTHLALET---DLNDKQRNYIQK 328

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG + +  +   +++++  V   +  K  E N+++ V 
Sbjct: 329 IDNSAKSLLGVINDILDFSKIEAGKLSIEKADFNMSEVIENVIHVVELKADEKNLKLTVN 388

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D  +   F  D  RL QI   +L NA+ F+  G   I         F F V + G  + 
Sbjct: 389 YDKNISKYFYGDSLRLRQILINLLGNAVKFTDSGEVSISLKKISKDRFRFEVSDTGIGLS 448

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++    +F  F         +  G GLGLSI +  + L GG + + S +   +     I
Sbjct: 449 QEKQSKLFKSFSQADGSITRKYGGTGLGLSISKQLVELLGGKIWVESKENIGSKFIFEI 507


>gi|46581448|ref|YP_012256.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450870|gb|AAS97516.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 955

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 133/717 (18%), Positives = 254/717 (35%), Gaps = 79/717 (11%)

Query: 142 DLVAETQNDCAIKIEGRVSGSCAF-LRILSLDGIYSELAETT---LKCKKLSNHISVFK- 196
           D++A T +D  + + G+  G  A  +R  ++  + +E A              H    + 
Sbjct: 89  DILAGTCDDLLLPVSGQ--GGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRY 146

Query: 197 -VLFDSLDFLVWHRD--------QAGDILWAN--ISYKKNTETEGIVFQKAI-------- 237
             LF      +W +D                +   +Y +        F + I        
Sbjct: 147 AELFHLCPVPLWQQDVTEAQQAIDTLRTSGVHDLRAYFEAHPHVLAEFARRIRIVDANET 206

Query: 238 ------GESRKLFKEEIKKR------------MISSSALEKNFCETVSTLEHGNNKSYKI 279
                 G    L   ++  R            M++S A   +       L+ G       
Sbjct: 207 ASGLFAGCREDLLDPDLFMRLGMRQFVMELLVMLASGADRLSVEAACRALDGGERALQIE 266

Query: 280 VRVLNSFGEAGIAI-----DVSKEITVNDQLTHTYEILHNLTVAIA--IF--DQNRYLQF 330
            R++  FG  G+ +     D+++       L     ++  ++  +   ++  D      F
Sbjct: 267 ARLMPGFGLTGMRVIACGTDITERNRSQAALADFRNLVEAMSDNMIDMLWAKDTECRYIF 326

Query: 331 HNRSFVE-LWEIDLAFLATNPSND--ELLEFLRSANKLPE---QLNWKTWKENIFSVYKS 384
            NR+  E L   D   +         E    L   +   E     +    +      ++ 
Sbjct: 327 ANRAIRENLLHSDDERVLGRTDLHFAERQRHLGHEHTFGELCIDSDRVVLQTRTSGRFRE 386

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
               +  + + + Q   +        GT+    ++T+    E       ++   T++  +
Sbjct: 387 DGKVQGRYLMLDVQKSPLYDRQGKLLGTVGTGRDITLLKAQEDALLRSQQLLKWTVEAST 446

Query: 445 EGVAVFGPDGRIKLSNPAFRSL----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           + +  +       L N     L       +E          +         N   G   F
Sbjct: 447 DTIWQYDVVHDRFLCNNRCPGLLALSDAEDECHCRHRADPADAELLLHNLRNGQGGDKGF 506

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           +  +   DDE              V+EY     P    +    ++T+  R E  L +  +
Sbjct: 507 SMELRLRDDEGVWHWMYCR---GKVVEYDEEGRPTL-VVGANTDITERKRFETELRQARD 562

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               A++ K+ F+ ++S+E+R+PL  ++G   LL+      L S Q + +   S SS  L
Sbjct: 563 DAEAANKAKSIFLANMSHEIRTPLNGVLGMLQLLED---APLTSDQQELLHVASQSSRNL 619

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGS 679
           L ++NDILD   + +               L  V+ ++AT   + +IRI+          
Sbjct: 620 LTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAKDKDIRIETDISPNVPPL 679

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-----DFIFSVKNNGSSIPED 733
            + D  R  QI   ++ NA+ F+ +G+  + L     +        +  V+++G  IP+D
Sbjct: 680 LIGDVTRFRQILFNLVGNAVKFTQQGTVRISLHGLERHSPAGALRMLLMVEDSGIGIPQD 739

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           M  +VF  F  V  ++R +  G GLGL IV S ++  GG ++I S +   TTI C +
Sbjct: 740 MLGNVFEPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAIDSEEGAGTTIACTL 796


>gi|224537976|ref|ZP_03678515.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520413|gb|EEF89518.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 806

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 217/510 (42%), Gaps = 30/510 (5%)

Query: 297 KEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFVELWEI-------DLAF 345
           +       L H+ +IL N    L V I ++D++ YL   N   +E++ +        ++ 
Sbjct: 309 QAKEDRRALDHSEKILRNIYKNLPVGIELYDKDGYLVDMNDKELEIFGLADMKEALGVSL 368

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                  +++ E LR+   +   +N+   K + +   +     KD  +L     L +  +
Sbjct: 369 FENPNIPEDVKEKLRARENVDFSINYDFSKIDRYVTSRR----KDVINLQTKVAL-LYDS 423

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG---PDGRIKLSNPA 462
            N     +++  + T      TK      +     D+   G A F     DG     N  
Sbjct: 424 QNQFSNYLFINIDTTETTSAYTKIQEFEHLFLLIGDYAKVGFAHFNIMTRDG--YAQNTW 481

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK--SLQGTLEL 520
           +R+L + E   +     + +          +     +     TS   E +     G    
Sbjct: 482 YRNLGEKENTPMPQVIGVYSHVHPEDCAVLKQFVGQVKEGKATSLSKEVRINRGNGKYSW 541

Query: 521 LSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            S +V+     P     + +    ++T     E+ L    +   + D +K++F+ ++S+E
Sbjct: 542 TSINVMVRDYRPQDGVIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHE 601

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL +I+GF+ LL  +       ++ +Y++ +  ++ +LL LV+DILDL+ +++G   
Sbjct: 602 IRTPLNSIVGFSSLLAET---DDREERQEYIKIVETNNELLLQLVSDILDLSKIESGTFD 658

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
              S + +N+   ++ +S+  K+ E  + +             D+ R +Q+ +  ++NA+
Sbjct: 659 FVRSDLDVNESCMKIIKSMEMKVPE-TVDLVFEKYMPDCHIYTDKNRFMQVITNFINNAL 717

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            F+ +G+  +        +  F V++ G  IP++   S+F RFV        +G GLGLS
Sbjct: 718 KFTKQGTIALGYEQTAPHEIKFYVRDTGFGIPKEKIDSIFERFVKLNTF--VQGTGLGLS 775

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I +S ++  GG + + S++   +      P
Sbjct: 776 ICKSLVSQMGGKIGVESTEGEGSCFWFTHP 805


>gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 586

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/366 (23%), Positives = 155/366 (42%), Gaps = 31/366 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           T+ +         +  +++GV      GR+ ++NP    L                    
Sbjct: 237 TELSQEKNQLRNVLLSMTDGVITLDSSGRVLMANPQAEELLGNGPQ-------------- 282

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-MLTFVNV 545
              +  E     +   ++      +KSLQ  +++    +L   + PL N ++ +   V V
Sbjct: 283 -GSFDLELTVEQVLGELVQRVKHNKKSLQDEVKV-EGRILSVRLAPLLNDESEVWGVVAV 340

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V  E+ L          + ++  FV +VS+ELR+PLT + G+T+ L    +     +
Sbjct: 341 LQDVTREKKL----------ESLRREFVANVSHELRTPLTYLQGYTEALIDGMVKQ-PEE 389

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +Y+  I   +  L  LVND+LDL+ ++ G + L    I LN L+  V + +     + 
Sbjct: 390 KKKYLNIILEETLRLRRLVNDLLDLSLMETGHLTLKKDNISLNKLIERVIKKVNPVAEKK 449

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + I      +L    AD  R+ Q+   ++ NA+ ++  G  +I++A+         VK+
Sbjct: 450 RVNITAEL-KELPLIYADEDRMEQVLINLIDNALRYTENGGEIIIEASAGTESVTVCVKD 508

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPED    ++ RF        R   G G+GL+IV++ I  HGG V   +  +    
Sbjct: 509 RGPGIPEDELPFIWERFYKVDKARTRDNGGTGIGLAIVKNIIEAHGGKVWAKNLRDSGAV 568

Query: 784 INCRIP 789
               IP
Sbjct: 569 FCFNIP 574



 Score = 39.9 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 25/139 (17%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLE 357
             ++ +      +L ++T  +   D +  +   N    EL             + +++L 
Sbjct: 237 TELSQEKNQLRNVLLSMTDGVITLDSSGRVLMANPQAEELLGNGPQGSFDLELTVEQVLG 296

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GT 412
            L    K     N K+ ++ +                  G+ L V +           G 
Sbjct: 297 ELVQRVK----HNKKSLQDEV---------------KVEGRILSVRLAPLLNDESEVWGV 337

Query: 413 IWMFENLTVQVDLETKYNT 431
           + + +++T +  LE+    
Sbjct: 338 VAVLQDVTREKKLESLRRE 356


>gi|282897495|ref|ZP_06305496.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197590|gb|EFA72485.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 643

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             I+N F+  +S+EL +PLT +IG +  L    LG L  +Q +Y++ I  S   LL ++N
Sbjct: 410 SRIRNEFLATISHELLTPLTYVIGMSSTLLRWPLGELTPRQREYLQTIHDSGERLLEMIN 469

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVAD 683
           DILDL+ + AG   LN     L  L   +  S+  K     + +K+    + +   F AD
Sbjct: 470 DILDLSQIQAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSAD 529

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R+ QI   +L+NA+ F+ +G +V L+   ++   IF V++ G  IPE+    VF +F 
Sbjct: 530 PGRIEQIIWNLLTNAIKFTPQGGSVTLRFWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQ 589

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                      G G+GL++ +  + LH G + + S+    +     IP
Sbjct: 590 QVDASYHRPYEGTGIGLALTKQLVELHRGRIEVESTVGVGSVFTVWIP 637


>gi|189346303|ref|YP_001942832.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
 gi|189340450|gb|ACD89853.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
          Length = 590

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 153/368 (41%), Gaps = 25/368 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K     +        + E + V    G I L NPA   +++ +   L      R I   
Sbjct: 241 KKKQRQEEWYRAVFSGIREAILVTNAAGEIVLVNPAASRMFRIDGAMLM----FRPIRKL 296

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNV 545
             R   E    D      T+   E  SL  +       +L+ S +P + N+++  T    
Sbjct: 297 SDRRLQE--IIDGVHENKTALLKEEVSLATS---KGTRILQISSMPVMKNSRSDGTVFVF 351

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D  R           LR  + I+  FV  VS+ELR+PLT+I G+T+ L    +      
Sbjct: 352 NDITR-----------LRNLERIRRDFVSSVSHELRTPLTSIKGYTETLLEGAMHD-PEH 399

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            + +++ I   S  L  LVND+LDL+ +++G ++ +++ + L  ++ +  + +   + + 
Sbjct: 400 ATAFLQIILKESEQLTALVNDVLDLSRIESGKIEYHFAPVDLCRVIEKTVEMLTPAIEKK 459

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVK 724
            IR++      +    AD   L  +   +L NA+ +   +   V +   R   D    ++
Sbjct: 460 QIRLERHYQDDIPEVTADAGYLEIVVRNLLDNAVKYVDDRNGRVRISVFRTGMDVRMEIE 519

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  I       +F RF        R   G GLGL+IV+  +  H GH+ + S     +
Sbjct: 520 DNGIGIAPADLDRIFERFYRVDKARSRTLGGTGLGLAIVKHIVIGHKGHIEVRSRINQGS 579

Query: 783 TINCRIPS 790
             +  +P+
Sbjct: 580 VFSITLPA 587



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 15/194 (7%)

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           +G     F     +R+  ++    +   +     H +++  K+ RV+N   +        
Sbjct: 187 VGVLTAFFLARPLQRLAEAAEKRLHGDFSGVIPVHRDDEIGKLARVINFMSD-------- 238

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +      Q      +   +  AI + +    +   N +   ++ ID A L   P      
Sbjct: 239 EIKKKQRQEEWYRAVFSGIREAILVTNAAGEIVLVNPAASRMFRIDGAMLMFRPIRKLSD 298

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             L+       +      KE +               +P       ++ ++   GT+++F
Sbjct: 299 RRLQEIIDGVHENKTALLKEEVSLATSKGTRILQISSMP-------VMKNSRSDGTVFVF 351

Query: 417 ENLTVQVDLETKYN 430
            ++T   +LE    
Sbjct: 352 NDITRLRNLERIRR 365


>gi|261251332|ref|ZP_05943906.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260938205|gb|EEX94193.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 639

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    E    A+  K+ F+ ++S+E+R+P+  I+G   LL+ +    +   Q  Y++ 
Sbjct: 223 QQLNSAKEKAEVANIKKSEFLANMSHEIRTPMNGIVGIATLLEETSPSDI---QKNYLDI 279

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +++SS+ LL+++NDILD + ++AG   L+     +  LL++     + +  +  +  +  
Sbjct: 280 LTSSSSTLLDIINDILDFSKIEAGHFSLSNEPFDICQLLHQQSNEYSVRAAQKQLMFQCN 339

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNG 727
            +  L      D+ RL Q+ + ++ NA+ F+ +G  + LK        +      +K+ G
Sbjct: 340 IEPNLPNEIEGDQVRLKQVLNNLIGNALKFTQQGH-IELKVNSLHIEQHPHLYIEIKDTG 398

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +D   S+F +F        R   G GLGL+I +  + + GG + ++S     ++  
Sbjct: 399 IGIDKDNLSSIFEKFQQADGSTTRKYGGTGLGLAISKKIVEMMGGELKVTSEVGLGSSFY 458

Query: 786 CRIP 789
             IP
Sbjct: 459 FTIP 462


>gi|284166092|ref|YP_003404371.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
 gi|284015747|gb|ADB61698.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
          Length = 1064

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/644 (15%), Positives = 225/644 (34%), Gaps = 76/644 (11%)

Query: 198  LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI---- 253
            + D++       D  G+I   N    +  E  G+   +      +L  +E  +R+     
Sbjct: 445  ILDTIPAGGLVLDADGEITRIN---DRAIELLGVEKPETFSREDRLLYDEDGRRLSAEEY 501

Query: 254  ---SSSALEKNFCETVSTLE--------HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
                + A  +   + V  +E         G      +     +  +  I   V+    V 
Sbjct: 502  PSSRAFATGEPIYDRVLRIERPEGGEDGDGERHWLSVSAAPIADDDGTIDRVVTAVEDVT 561

Query: 303  D-------QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            D         +   E+   ++ A    D+       N     L  +D   L         
Sbjct: 562  DLKERERELESELREVFGRVSDAFYAVDEEYRFTHVNERAAVLLGVDEDDLLGR------ 615

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGGTIW 414
                R  +  PE    +  +       ++ E+   + +    G  L   +  +  G +++
Sbjct: 616  ----RLGDVYPETDEVEQIRNRFDEAMETQESVGLEHYSELLGFWLEATIYPSESGVSVY 671

Query: 415  MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENR 473
             F ++T + + E +            ++L E V +  PDG  +   NP +  +W      
Sbjct: 672  -FRDVTERKEREQELRESEAKFRTLAENLDEIVWMSTPDGEEMLYINPVYEDVWGRSRES 730

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            L     +                    A   T++D+E + ++      +   +    +P+
Sbjct: 731  LY--DDLNAFLEAIHPDDRARVREAYAALPETAYDEEFRVVR---PDGAVRWVHAQAVPV 785

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             N   ++  V +   +   R        L  ++E    F   VS++L+ PL  I  +  L
Sbjct: 786  CNDGEIVRIVGIATDITDRRE---YRRKLEASNERLEQFAYAVSHDLQEPLRMITSYLQL 842

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L++     L+   ++++E+    +  +  ++  +L+ + V      L    + L  +++E
Sbjct: 843  LESRYADELDEDAAEFIEFAVDGAERMREMIEGLLEYSRVTTRGDPL--EPVDLERVVDE 900

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKA 712
            V   +  ++ + N  I + S   L     D  +L Q+F  ++ NA+++S  +   + + A
Sbjct: 901  VLADLQFRIEDENAEISIES---LPRVEGDIDQLRQVFQNLVDNAIEYSGDEPPQIEITA 957

Query: 713  ARD------------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             R                         + +++ SV + G  I  +    +F  F     R
Sbjct: 958  ERREVSRAAADGPADPNPRADGIAAESDDEWVISVADEGIGIDPEDTDRIFEVFERLHTR 1017

Query: 749  GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +  G G+GL++ +  +  HGG + + S      T +  +P+ +
Sbjct: 1018 EEHEGTGIGLALCQRIVERHGGEIWVESEPGEGATFSFTLPAAD 1061



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 100/308 (32%), Gaps = 37/308 (12%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +     E           +  +  ++ L +++D  ++  D  G ++  N      T    
Sbjct: 1   MSDRAGERGRDFWDDADETTALRRYRTLVNTIDDGLYQLDADGTVVAVNDVIVDRTGYAR 60

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNN-----KSYK 278
                A     ++   +   R+        +    V+++         G+      +   
Sbjct: 61  DELIGA--HVSRILDADDVARVERGIREGLSADRDVASVFEVALETADGDRVPTELRVNP 118

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-------ILHNLTVAIAIFDQNRYLQFH 331
           ++   +  G  G+A DV+      ++     E       +L    V + + D +  + + 
Sbjct: 119 LLEDGDFRGTVGVARDVTDRRRSQERAETAIESYETITTVLDEADVGVFVLDDSFDVAWA 178

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS----ET 387
           + +  E +  D   +      + + E +R         +   + + + + Y+ +      
Sbjct: 179 DETAGEYFGFDRDAVIGRDKRELIEETIRHR-----VADGDAFADTVLATYEDNSYDERF 233

Query: 388 HKDTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
                   +G+   +   S P       GG I ++ ++T +    T+   L +   E ++
Sbjct: 234 DCHVTAGSDGEERWLEHRSRPIESGRYAGGRIELYYDVTNRHRRATQLRRLNEAVSEWLE 293

Query: 442 HLS-EGVA 448
             S E VA
Sbjct: 294 ESSREAVA 301



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 94/289 (32%), Gaps = 11/289 (3%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            D   +      L     +++ +   +   D +  +   N   V+        L      
Sbjct: 10  RDFWDDADETTALRRYRTLVNTIDDGLYQLDADGTVVAVNDVIVDRTGYARDELIGAH-V 68

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
             +L+    A          +   ++ SV++ +    D   +P    ++ ++      GT
Sbjct: 69  SRILDADDVARVERGIREGLSADRDVASVFEVALETADGDRVPTELRVNPLLEDGDFRGT 128

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           + +  ++T +   + +  T ++        +D    GV V      +  ++      +  
Sbjct: 129 VGVARDVTDRRRSQERAETAIESYETITTVLDEADVGVFVLDDSFDVAWADETAGEYFGF 188

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWD--LFAAIITSFDDERKSLQGTL-ELLSDSVL 526
           + + +        I  T      + D +   + A    +  DER     T      +  L
Sbjct: 189 DRDAVIGRDKRELIEETIRHRVADGDAFADTVLATYEDNSYDERFDCHVTAGSDGEERWL 248

Query: 527 EYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           E+   P+ + +     +  + +VT+  R    L   NEA+ +  E  + 
Sbjct: 249 EHRSRPIESGRYAGGRIELYYDVTNRHRRATQLRRLNEAVSEWLEESSR 297



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 61/470 (12%), Positives = 122/470 (25%), Gaps = 75/470 (15%)

Query: 63  SEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFH 122
           ++    L +Y +L+   +      D       +   +  R    + +         L   
Sbjct: 16  ADETTALRRYRTLVNTIDDGLYQLDADGTVVAVNDVIVDRTGYARDELIGAHVSRILDAD 75

Query: 123 HYIKLSKATE----KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
              ++ +         R     F++  ET +   +  E RV+            G+  ++
Sbjct: 76  DVARVERGIREGLSADRDVASVFEVALETADGDRVPTELRVNPLLEDGDFRGTVGVARDV 135

Query: 179 AETTLKCKKLSNHISVFKVL---FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            +     ++    I  ++ +    D  D  V+  D + D+ WA+   +   E  G     
Sbjct: 136 TDRRRSQERAETAIESYETITTVLDEADVGVFVLDDSFDVAWAD---ETAGEYFGFDRDA 192

Query: 236 AIGES-RKLFKEEIKKRMISSSA-------------LEKNFCETVSTLEHGNNKSYKIVR 281
            IG   R+L +E I+ R+    A              ++ F   V+    G  +  +   
Sbjct: 193 VIGRDKRELIEETIRHRVADGDAFADTVLATYEDNSYDERFDCHVTAGSDGEERWLEHRS 252

Query: 282 VLNSFGEAG-----------------------------IAIDVSKEITVNDQLTHTYEIL 312
                G                                   + S+E        H  +IL
Sbjct: 253 RPIESGRYAGGRIELYYDVTNRHRRATQLRRLNEAVSEWLEESSREAVAERATDHLRDIL 312

Query: 313 HNLTVAIAIFDQNR---YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
                 I ++D +           +   L      F    P+         S      + 
Sbjct: 313 GMTLNGIYLYDADAPALRPASWTEATERLLGDLPTF---GPNEGIAWRVFESG-----EP 364

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIWMFENLTVQVDL 425
            +          Y           LP G      ++S        G   +   +   ++ 
Sbjct: 365 AFHADVSTAPDAYDPDTPIGSEMILPIGDHGVAFISSAERDAFDEGDRMLARVVASSLEA 424

Query: 426 E-------TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
                    +      +    +D +  G  V   DG I   N     L  
Sbjct: 425 TFDRLRHERRLERERDLTDRILDTIPAGGLVLDADGEITRINDRAIELLG 474


>gi|192290144|ref|YP_001990749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192283893|gb|ACF00274.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 903

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 108/599 (18%), Positives = 214/599 (35%), Gaps = 72/599 (12%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
           M    A +         + HG +  + I  +  + G   IA  +  +++  ++       
Sbjct: 45  MAGRIASQHTRAWEPPGVGHGLDVPWWIFVISLAVG-LSIAGLIELQLSRYERRNAHKLR 103

Query: 312 LHNLTVAI-----AIFDQ--NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
             +L   +     AI  Q  +  +   N++   L+            +       ++A +
Sbjct: 104 QAHLAAIVEGSSYAIVGQSIDGTVLSWNKTAERLFG-----------HTAERAIGQNATE 152

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWH---LPNGQTLHVIVTSNPRG-------GTIW 414
           L    + +  ++ + S           W      NG  + V V+ +P         G   
Sbjct: 153 LMVPDDLRDEEQQMLSGISDGTAFAYLWTKRKRANGTLVDVAVSISPIRADDGRLIGMAA 212

Query: 415 MFENLTVQVDLETKYNTL------------------VKVQGETIDHLSEGVAVFGPDGRI 456
              ++T  V  E + + L                  + +Q   ++  +  V      G I
Sbjct: 213 SMRDITDLVQAEREVHDLNAALERQVAERTCQLEKTLTLQTAILERAAYAVIATDVTGTI 272

Query: 457 KLSNPAFRSLWKTEENRL------SPGTHIRNIAATCSRYYNE----SDGWDLFAAIITS 506
            L NPA   +   +   L              +AA       E    S    +  A +  
Sbjct: 273 TLFNPAAERMLGYKAEDLIGRASAMLFHDSDELAARAEAMRKEGISVSSNLGVLQARLAR 332

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLP-----NAQTMLTFVNVTDSVRAERALTEKNEA 561
            D +         + +      ++  L      N   +   V++T+ ++ E  L     +
Sbjct: 333 NDPDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAVDLTEQLKYEDELKAARAS 392

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A   K  F+ ++S+E+R+PL  IIG+ DL+   +  +L     + V  I  +S  L 
Sbjct: 393 AEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDE--TLAPDTRRQVMRIFEASDSLR 450

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +++DILD + ++A  + L    + +N+L+      I  K  E  +++   +       +
Sbjct: 451 VIIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIATAQATPPVLI 510

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNG--DFIFSVKNNGSSIPEDMCKS 737
            D  RL Q+   +++NA+ F++ GS   ++    R +       SV + G  I  +  K 
Sbjct: 511 GDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVADTGIGISPEAQKG 570

Query: 738 VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRIPSKE 792
           +F RF         +  G GLGL+I +  +    G + I S     +T      +P  E
Sbjct: 571 LFKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEVELPVAE 629


>gi|312872733|ref|ZP_07732798.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325912287|ref|ZP_08174684.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
 gi|311091775|gb|EFQ50154.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325475946|gb|EGC79115.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
          Length = 612

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 175/416 (42%), Gaps = 30/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWMFENL-TVQVDLETKY-NTLVKVQGETID 441
            E       + NG  + HV V +N   G +    N+ +V+++   +  ++  +     + 
Sbjct: 208 EEMKDQALRISNGDYSGHVKVYANDEMGELARAFNILSVRIERSQEVSDSERRRLDNVLM 267

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N    +     EN +  G  I  +         E    DL +
Sbjct: 268 HMTDGVIATDRHGNITIINETALNFLDKTENEVK-GEPITQLLG-----LKEVTIQDLMS 321

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                      +    L L +D  L   +    +    +              L +  E 
Sbjct: 322 TQQELIVTANANTHDELILHADFSLIQRVTGFVSGLICV--------------LHDITEQ 367

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            +  +E +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++
Sbjct: 368 QKNENEQR-QFVSNVSHELRTPLTSLRAYVEALNDGAWKNENI-APQFLGVIQNETERMI 425

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI---RIKVISDGKLG 678
            ++ND+L+L+ +D G++K++   + LND L+ +       +  + +   +I+ I   +  
Sbjct: 426 RMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQAL 485

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  +++Q+   I++NA+ +S  G  + ++  + +   I SV + G  IP      +
Sbjct: 486 WVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRKDLSRI 545

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF         ++ G GLGL+I +  +  H G +   SS+   +T    IP ++
Sbjct: 546 FDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEK 601


>gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1681

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/517 (20%), Positives = 201/517 (38%), Gaps = 42/517 (8%)

Query: 291  IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            IA  +  E  ++  +     +  +   A  I D    +   N + + L +          
Sbjct: 692  IAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLKYQ-------- 743

Query: 351  SNDELLEFLRSANKLPEQLN-------WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            S D+L+   R+    PEQ +       ++   + +    +     +          + V 
Sbjct: 744  SKDQLIGQ-RTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITTAAEIIHVDVT 802

Query: 404  VTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +      G++++   + +L+ +  +         +    +     GV +   +G  +  N
Sbjct: 803  LKRIELNGSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWIC-VEGVCRYVN 861

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                 +       L  G  +  I      Y       DL     T F+ +     G    
Sbjct: 862  EQITEMTG-----LEVGQSVYRIFVQPEDYRCHIRELDLSQDS-TVFETQLFDAHGQRR- 914

Query: 521  LSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                VL  S   + + Q        ++TD+   +  L    +A   A+  K+ F+ ++S+
Sbjct: 915  ---DVLLTSYHTVQDGQNANLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFLANMSH 971

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            E+R+P+  I+G + L+  ++   L+SKQ  YV  +  ++  LL ++NDILD + ++A  M
Sbjct: 972  EIRTPMNAILGMSYLVLQTE---LSSKQRDYVGKVHQAAGSLLGILNDILDFSKIEAEKM 1028

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
             +  +   L+D+L+ +   ++ K+ E N+        +L  +   D  RL QI     +N
Sbjct: 1029 DIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQILINYCNN 1088

Query: 698  AMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
            A+ FS   S+V+L           +  F V++ G  IPE     +F  F  V  +   + 
Sbjct: 1089 AVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPEQKQGVLFGSFEQVDASTSREY 1148

Query: 752  RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +   +L GG V   S     +    R+
Sbjct: 1149 GGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRL 1185


>gi|315282987|ref|ZP_07871270.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
 gi|313613358|gb|EFR87219.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
          Length = 565

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 167/400 (41%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 190 RVPTYTHDEIGELGVAFNDMAKQLKYNISALRQEKEQLSNILVGMADGVIKFSVDKTIIL 249

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I    +   N++               E+K  Q   
Sbjct: 250 SNPPAEEFLHNWFFSPENTEKVL-IPVALNDLLNDTL--------------EKKESQVGE 294

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +D      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 295 ITFADRTYVAILTLLYTGEHVRSIVAVIRDMTEEKQL----------EKMKSDFVNNVSH 344

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 345 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 403

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 404 QMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNA 463

Query: 699 MDFS-SKG--STVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  +  +G    VILK   D  +   + +V +NGS I E+    +F RF       +R  
Sbjct: 464 IRHTGKEGYAGKVILKQTIDEAESNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGK 523

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 524 AVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIITLPL 563


>gi|116748886|ref|YP_845573.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
            fumaroxidans MPOB]
 gi|116697950|gb|ABK17138.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobacter
            fumaroxidans MPOB]
          Length = 1028

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 108/697 (15%), Positives = 254/697 (36%), Gaps = 88/697 (12%)

Query: 149  NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW- 207
            N C +  +G +         + +              +   +  +    + D+   ++W 
Sbjct: 363  NSCLLDAKGDIV--HVIGTGIDITERQRAEQALRESERLARDQEAQIMAILDAAPAMIWT 420

Query: 208  HRDQAGDILWANISYKKNTETEGIVFQKAIGE-------------SRKLFKEEIKKRMIS 254
              D+    +  N + ++ +  +        G               R+L  EE+  ++++
Sbjct: 421  AHDRECRSISGNRAARELSRVDETANMSKTGPEREHLAHYSIYKDGRELAPEELPIQVVA 480

Query: 255  SSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEAGIAI----DVSKEITVNDQLTH- 307
            S+  E         L+ G   S    ++ +++S G    AI    D+++   + ++L   
Sbjct: 481  STGREFRDYSLEFVLKDGPRYSLLGNVIPLIDSEGSPSGAIAAFMDITERKLMEEELRKS 540

Query: 308  ---------------------TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
                                  +++L  L V + +     ++ F N+ F + +       
Sbjct: 541  RDELEIRVRERTEELAAERQLFFDVLETLPVYVCLLTPEYHVPFANKVFRDRFGASKGL- 599

Query: 347  ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                      E L   ++  E  +        ++V K+S  H+  W  P+G++  V    
Sbjct: 600  -------RCFEHLFGRSEPCEICD-------TYAVLKTSTPHRWEWEGPDGRSYSVFDFP 645

Query: 407  NPRG-GTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                 G+  + E   ++T +   E    T  +   + ++ L   + +  PD  +  SN +
Sbjct: 646  FIDAKGSQLILEMGIDVTERKQAEEALKTERQRLFDVLETLPVMICLLTPDHHVAFSNRS 705

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            FR  +       S G H        +   N  + +           +  +S    + +  
Sbjct: 706  FREKFGE-----SQGRHCYEYRFGLNEPCNFCESY--------RVAETGRSHHWEVTVPD 752

Query: 523  DSVLEYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             ++++    P  +       +    ++T+   AER L      L + ++    F    S+
Sbjct: 753  GTIIDAHDFPFIDVDGSPMILEMDFDITEFREAERELKATVAKLEQLNQELQEFAFIASH 812

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            +L+ PL  I  F ++L   K  SL+++    +E I   +  +  L++ +   +   +G  
Sbjct: 813  DLQEPLRKIQTFGEMLVRRKKDSLDAEGKNLLERIIKGANRMAELLHALRTYSR--SGTS 870

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            +L +  + L+++      ++   + + N ++++   G L +  AD   L Q+F  ++SN+
Sbjct: 871  QLIHKPVSLSEVARGAASALEYWISKTNAKVEI---GDLPTVDADESLLHQLFQNLISNS 927

Query: 699  MDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVG 755
            + +  +     + +  +  +     SV++NG          +F  F     +     G G
Sbjct: 928  IKYRKESEPPVIKISGSVIDHQCRISVQDNGIGFDPCYSDQIFKPFQRLHGKDSPYSGTG 987

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +GL+I    +  H G +++ S     +T    +P K+
Sbjct: 988  MGLTICRKIVARHNGEITVESEPGRGSTFKVTLPLKQ 1024



 Score = 78.4 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 105/632 (16%), Positives = 211/632 (33%), Gaps = 112/632 (17%)

Query: 17  CTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLS------EICDQLS 70
              F+ +++V   +A   L + +      R +    K   ++           E+     
Sbjct: 84  IAPFADRLSVAVFLANGTLISCLAEAAY-RAQARAFKTEQQSRLSAEREKAAVELQQSER 142

Query: 71  KYHSLLTENNCLTIVWDGKDETP---------------EIIGQ----LHQRIDIPQTDTD 111
           KY  L+   N   + W+                     EI+G+    L    +   TD+ 
Sbjct: 143 KYRELVQNANSAIVRWNSGGTIAFFNEYAQTFFGYREDEILGKHVSVLLPETESAGTDST 202

Query: 112 LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSL 171
            L+ +       Y+ +    E +R++G    +     +       G VS          +
Sbjct: 203 ALALDVVRYPERYVSIIN--ENIRRDGS--RVWMAWTHKAIFDESGAVS---------EI 249

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
             + +++       +KL +       + D++D L+   D+ G I+  N + ++ T   G 
Sbjct: 250 LAVGTDITARRQAEEKLKHASEFATAILDTVDGLIIVLDRNGRIVRFNAACERLT---GW 306

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEK-------NFCETVSTLEHGNNKS--YKIVRV 282
              + IG     F    ++R       +        +  E    L  G+ +   +    +
Sbjct: 307 RVDEVIGRCFWEFLVPEEQRRGVLQVFQGLTTGKFPSRHENEWILRDGSRRWITWANSCL 366

Query: 283 LNSFGE----AGIAIDVSK-----------EITVNDQLTHTYEILHNLTVAI-AIFDQNR 326
           L++ G+     G  ID+++           E    DQ      IL      I    D+  
Sbjct: 367 LDAKGDIVHVIGTGIDITERQRAEQALRESERLARDQEAQIMAILDAAPAMIWTAHDREC 426

Query: 327 YLQFHNRSFVELWEIDLA--FLATNPSNDELLEF--LRSANKL-PEQLNWKTWKENIFSV 381
                NR+  EL  +D       T P  + L  +   +   +L PE+L  +     + S 
Sbjct: 427 RSISGNRAARELSRVDETANMSKTGPEREHLAHYSIYKDGRELAPEELPIQV----VAST 482

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYN---- 430
            +    +   + L +G    ++    P         G I  F ++T +  +E +      
Sbjct: 483 GREFRDYSLEFVLKDGPRYSLLGNVIPLIDSEGSPSGAIAAFMDITERKLMEEELRKSRD 542

Query: 431 --------------TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
                            ++  + ++ L   V +  P+  +  +N  FR  +      L  
Sbjct: 543 ELEIRVRERTEELAAERQLFFDVLETLPVYVCLLTPEYHVPFANKVFRDRFGAS-KGLRC 601

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             H+   +  C       +  D +A + TS    R   +G  +  S SV ++  I    +
Sbjct: 602 FEHLFGRSEPC-------EICDTYAVLKTS-TPHRWEWEGP-DGRSYSVFDFPFIDAKGS 652

Query: 537 Q-TMLTFVNVTDSVRAERALTEKNEALRKADE 567
           Q  +   ++VT+  +AE AL  + + L    E
Sbjct: 653 QLILEMGIDVTERKQAEEALKTERQRLFDVLE 684


>gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
          Length = 874

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 102/531 (19%), Positives = 206/531 (38%), Gaps = 46/531 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                 +Q  +T  I +N+   IA       L   N  ++ +      +      ND   
Sbjct: 294 ASRDAENQNLYTEHIFNNVPEGIA-------LITINAPYINIRMNYAGYQMFGYDNDSKN 346

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV---IVTSNPRGG-- 411
                     E  +  T   +  +  +   T++      +G  + +   +  ++   G  
Sbjct: 347 NVCIDHFIYNEDYDHVTGVFDEAAQGRGPCTYECRIRRADGMLIWIAGIVERNHDNNGND 406

Query: 412 -TIWMFENLTVQ-VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
             +  F ++T + +  E +     + +   I  ++E  ++      I      F SL + 
Sbjct: 407 ILMTTFHDITEEKLAREEEAVKNKRERRMLITAVTESYSIIAS-LNITRDELQFISLREL 465

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-----IITSFDDERKSLQGTLELLSD- 523
             + +S       +    +         +         +  SF   R  +   + L  D 
Sbjct: 466 FADSVSRAGTYNELYERIAERIEPKYEDEFRQRFAPDKVELSFAKGRSRIWTDIRLRLDD 525

Query: 524 ---SVLEYSIIPLPNAQT----------MLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                L   II + N              ++     +    +R L +   A + A+E K+
Sbjct: 526 GIYHWLSIQIIHVRNRNNSKEINAVFLARISDEQKIEEANQKRNLQDALSAAKLANEAKS 585

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+++R+PL +IIG TD+LK+        +  + ++ IS S   LL L+NDILD+
Sbjct: 586 RFLSNMSHDIRTPLNSIIGMTDILKSHP--DDTKQVEEGLDKISMSGRHLLELINDILDM 643

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQ 689
           + +++G M L  S   +  +++E+ + +  +   + I  I  I   +  + + D  R+ Q
Sbjct: 644 SRIESGKMSLQESGFNIRAMMSELIELVRPQALGSGITFISDIVSIEHDNVIGDELRIKQ 703

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRF 742
           I+  ILSNA+ ++  G ++ +    D          +IF   +NG  +  +  K +F+ F
Sbjct: 704 IYLNILSNAVKYTWAGGSITITLREDGDVKNGRRHSYIFICSDNGIGMSREFQKHIFDSF 763

Query: 743 VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   G   G GLG++I  + +NL GG + + S     +     IP +
Sbjct: 764 ERAEDNAIGNVTGTGLGMAIARNLVNLMGGTIDVDSRLGKGSVFTVTIPLE 814


>gi|326202278|ref|ZP_08192147.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987396|gb|EGD48223.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 700

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 172/396 (43%), Gaps = 21/396 (5%)

Query: 416 FENLTVQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
             N+  Q+  E +   +++             I++ S+ + V   +G++  +N     ++
Sbjct: 276 INNIDNQLKQEQQQRMMIEDMLVKNDRCYELIINNSSDAIIVTS-EGKLIFANDRAEKIF 334

Query: 468 KTEENRLSPGTHIRNIAATCSRYY--NESDGWDLFAAIITSFDDERKSLQGTL-ELLSDS 524
               +    G  + +      R       +   L  A    ++ +  S +G + +L S S
Sbjct: 335 GIYTSGELIGMELLSFVHPDDRILVRKHMEMSCLGQASPVQYEYKIMSHKGRIIDLESTS 394

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELR 581
            +      L N   +    +     + +  + +    L +    +++   F  ++S+EL+
Sbjct: 395 DILVYQGKLSNISILKDISSRKQISKLKSDIRDNERVLNETIEYNKLLTEFFSNISHELK 454

Query: 582 SPLTNIIGFTDLLKTSKLGSL----NSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +PL  I+G   +L       L        ++Y   +  +   LL LVN+++DL+  D+G 
Sbjct: 455 TPLNVILGAIQILNLPHDFELPQPFEENLNKYHRVMKQNCYRLLRLVNNLIDLSKFDSGF 514

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +KLN S   +  ++ E+  S+A  +    + I   +D +      D  ++ +I   +LSN
Sbjct: 515 LKLNLSNQNIVSVVEEITLSVADYVESRGLSITFDTDCEEKIIAVDADKIERIILNLLSN 574

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVG 755
           ++ F+ K  ++++  +        SV++ G  IP+D  +++F RF          R G G
Sbjct: 575 SIKFTDKDGSILISISDKGEMVSISVRDTGIGIPKDKLETIFERFGQVDKTLTRNREGSG 634

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +GLS+V++ + +HGG + ISS +   + +   +P K
Sbjct: 635 IGLSLVKTLVEMHGGVIKISSMEGKGSEVYIELPVK 670


>gi|255526818|ref|ZP_05393717.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296186417|ref|ZP_06854820.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255509497|gb|EET85838.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296048864|gb|EFG88295.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 775

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 106/535 (19%), Positives = 218/535 (40%), Gaps = 45/535 (8%)

Query: 291 IAIDVSKEITVNDQLTHTYEIL-----------HNLTVAIAIFDQNRYLQFHNRSFVE-L 338
           I  DV++++ +        +I+            N+   + + D++      N S  E +
Sbjct: 221 IGEDVTEKVLLRKSSQEQAKIINKQKEKLEIIMENMFDGLFVIDKHYKYTLLNNSAREFM 280

Query: 339 WEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           +    L  +  + S  +  + L +   + E    K  K      ++ +   KD  H  + 
Sbjct: 281 FNFHPLKSVGDSLSYIKYYDSLGNLIPVKELPITKVLKGEKVKEFRITCGMKDEMHNFDI 340

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
               +          I +  N+T ++  E   N L+K Q    +++   + V    G ++
Sbjct: 341 SGSPIYDNKGDFDSGIIIVRNVTDKIKAEE--NRLLKTQLNFFNNMIANLKV----GFVR 394

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSL 514
            S P ++ +    E        ++ I        +   G +LF+A   + D+E   RK++
Sbjct: 395 YSYPEYKII----EINNKTYDDLKQINPGVGNVLS-IIGKNLFSAFNFTKDEEAEFRKNI 449

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK----- 569
           Q  ++   +S   Y    L   +  L  ++        +A+   + +    DE+K     
Sbjct: 450 QNIVDKKVNSNFNYHKFYLSGEERFLKLIHQPLVGINGKAVEIIDISTDITDEVKAKNEM 509

Query: 570 -------NSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASST 618
                       +VS+EL++PL  I     L    LK   +     K  + V+ I  +  
Sbjct: 510 KKIFQIHEELFANVSHELKTPLNVIFSTNQLMELYLKKGLVEVNKEKVFRDVDIIKQNCY 569

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+N+I+DL+ +++G  KLN S   + ++   + QS++  +    I I   ++ +  
Sbjct: 570 RLTKLINNIVDLSKIESGFFKLNLSNENIVEVTENIVQSVSEYIKRKEINIIFDTNTEEK 629

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D +++ +I   ++SNA+ FS+ G ++ +      G    SV++ G  I +    ++
Sbjct: 630 IIACDPEKIERIILNLISNAIKFSNSGGSIFVNVLDKGGIVEISVEDTGIGIEKKYLDNI 689

Query: 739 FNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF            G G+GLS+V+S + +HGG +S++S     +     +P++
Sbjct: 690 FGRFQQVDKSLSRNVEGSGIGLSLVKSIVEMHGGKISVASEVGKGSIFKVELPAR 744


>gi|302036227|ref|YP_003796549.1| putative phosphate regulon sensor histidine kinase PhoR [Candidatus
           Nitrospira defluvii]
 gi|300604291|emb|CBK40623.1| putative Phosphate regulon sensor histidine kinase PhoR [Candidatus
           Nitrospira defluvii]
          Length = 619

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 165/424 (38%), Gaps = 40/424 (9%)

Query: 385 SETHKDTWHLPNGQT-LHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQG-ETID 441
           SE       L  G   + ++V+S    G +      +T Q++ + K  +  + Q    + 
Sbjct: 207 SEMAAAARQLAGGTPGVRLVVSSTDEVGLLAQTLNEMTDQLETKIKEVSDDRAQLLAMLI 266

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            + EGV V    G +   NPA   ++               +  +  R+Y E    +   
Sbjct: 267 AMVEGVMVLDYRGTVVQVNPALERMFSL------------ELTESRGRHYAELIRHEGLT 314

Query: 502 AIITSFDDERKSLQGTLEL-LSDSVL--EYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           A+++S    R    G + L  S   L  E SI      Q         D     R     
Sbjct: 315 ALVSSVLQTRSGQGGEITLSPSGRCLRVEASIAGGSREQEACAVFVFHDITELRRL---- 370

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                  ++I+  FV +VS+ELR+PLT+I G+ + L         +  + ++E I   S 
Sbjct: 371 -------EKIRKDFVANVSHELRTPLTSIKGYVEALLDGGKDE-PATATAFLEIIMRQSN 422

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  +++D+L L+ +++G +      + L  LL      I     + +  I++    +  
Sbjct: 423 RLNLILDDLLQLSQIESGQVLFRREPVDLRALLERTVAVIKPLADKKHHTIELSLPDEYW 482

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTV--------ILKAARDNGDFIFSVKNNGSSI 730
               D +RL+Q+F  +L NA+ ++     +         ++AA         V ++G  I
Sbjct: 483 VVEGDEERLVQVFINLLENAVKYTPDQGRISMAIRNATHMRAATPRPMIEIVVADSGIGI 542

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     VF RF        R   G GLGL+IV+  +  H G V +  +    +     +
Sbjct: 543 PEADRPRVFERFYRVDKARSRELGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRFVVHL 602

Query: 789 PSKE 792
           P  +
Sbjct: 603 PVAQ 606



 Score = 38.8 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 20/138 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +K   V+D       +L  +   + + D    +   N +   ++ ++L            
Sbjct: 249 TKIKEVSDDRAQLLAMLIAMVEGVMVLDYRGTVVQVNPALERMFSLELTESRGRH----Y 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYK-SSETHKDTWHLPNGQTLHVI-----VTSNPR 409
            E +R                 + SV +  S    +    P+G+ L V       +    
Sbjct: 305 AELIRHEGLT----------ALVSSVLQTRSGQGGEITLSPSGRCLRVEASIAGGSREQE 354

Query: 410 GGTIWMFENLTVQVDLET 427
              +++F ++T    LE 
Sbjct: 355 ACAVFVFHDITELRRLEK 372


>gi|46908181|ref|YP_014570.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093376|ref|ZP_00231143.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|226224552|ref|YP_002758659.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes Clip81459]
 gi|254825557|ref|ZP_05230558.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|254852849|ref|ZP_05242197.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|254931881|ref|ZP_05265240.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|254992997|ref|ZP_05275187.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J2-064]
 gi|255520088|ref|ZP_05387325.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J1-175]
 gi|300763741|ref|ZP_07073738.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|46881451|gb|AAT04747.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018247|gb|EAL09013.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|225877014|emb|CAS05723.1| Putative two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606182|gb|EEW18790.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|293583432|gb|EFF95464.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|293594798|gb|EFG02559.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|300515477|gb|EFK42527.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|328466295|gb|EGF37452.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 1816]
 gi|332312388|gb|EGJ25483.1| Sensor protein ResE [Listeria monocytogenes str. Scott A]
          Length = 596

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 166/400 (41%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I    +   N++               E+K  Q   
Sbjct: 281 SNPPAEEFLHNWFFSPENTEKVL-IPVALNELLNDTL--------------EKKESQVGE 325

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +D      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 326 ITFADHTYVAILTLLYTGEHVRSVVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 435 QMDNQKLPLAPLLRKVISNFDVLAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNA 494

Query: 699 MDFSSK---GSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  + K      VILK   D    + + +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYDGKVILKQTIDEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 555 AVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIITLPL 594



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 106/322 (32%), Gaps = 52/322 (16%)

Query: 284 NSFGEAGIAI-DVSKEI-----TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  GE G+A  D++K++      +  +      IL  +   +  F  ++ +   N    E
Sbjct: 228 DEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEE 287

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
              +   F +   +             +P  LN     E +    +  E+        + 
Sbjct: 288 F--LHNWFFSPENT---------EKVLIPVALN-----ELLNDTLEKKESQVGEITFADH 331

Query: 398 Q---TLHVIVTSNPRGGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHL 443
                L ++ T       + +  ++T +  LE            +  T + +     + +
Sbjct: 332 TYVAILTLLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI 391

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY--YNESDGW---- 497
            +GVA    + R       F  +    +  L  G  + ++         +N+ D      
Sbjct: 392 IDGVAQSDEEVR------EFAQI--IYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443

Query: 498 -DLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             L   +I++FD   K     L L  ++  LEYS  P    Q ++  +        +   
Sbjct: 444 APLLRKVISNFDVLAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503

Query: 556 TEKNEALRKADEIKNSFVQHVS 577
             K    +  DE +++ V  VS
Sbjct: 504 DGKVILKQTIDEARSNLVITVS 525


>gi|319901154|ref|YP_004160882.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319416185|gb|ADV43296.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 807

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 111/511 (21%), Positives = 210/511 (41%), Gaps = 27/511 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF------L 346
           I       ++        +  N+ V + I+D+N  L   N+  ++++ I          L
Sbjct: 308 ITRRDRRIIDHSEQIFQHVFSNIPVGVEIYDRNGCLTNINQEDMDIYGIACKEDVLGLRL 367

Query: 347 ATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
             NP+  E  L  + + + +  QL +     +  + Y  +       HL           
Sbjct: 368 QDNPNFSEKQLHRIETEDDVDFQLEYHF---DRLNGYYPTTFKNRVVHLYLKLRRVYDGL 424

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA--- 462
            +  G      +N T +VD++ + N          D+   G A F     + L   A   
Sbjct: 425 GHFMGYLCITIDN-TERVDIQGRINDFENFFLIISDYAKVGYAKFNL---LTLEGYAIKQ 480

Query: 463 -FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK--SLQGTLE 519
            F+++ + ++  L     I +      R+   +    +       F +E +     G   
Sbjct: 481 WFKNMGEKDDMVLKGVIGIYSHLHPHDRWKLLNFYRQVHIGRRKRFSEELRVCRPDGGWN 540

Query: 520 LLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +  + +     P     +      ++T     E  L E  E    AD +K++F+ ++S+
Sbjct: 541 WIRCNTILNRYEPESGVIELTSVNYDITQLKETECKLMEAKEKAETADRLKSAFLANMSH 600

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GF+ L+  ++      ++ +Y+  + A++ +LL L++DILDL+ ++AG  
Sbjct: 601 EIRTPLNAIVGFSGLVSETE---DPDERKEYISIVEANNNLLLQLISDILDLSKIEAGTF 657

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                 I +N L  ++  S+  K+    + +    +      V+DR RL Q+ S  ++N+
Sbjct: 658 DFMVGDINVNQLCTDLVTSLQMKLKP-GVELVFDRNLPEYHIVSDRNRLYQVLSNFVNNS 716

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + F+ KGS  +     D     F V + G  I  D  K+VF+RFV         G GLGL
Sbjct: 717 VKFTFKGSIKVGYEKVDGMRLRFYVSDTGLGIAPDKQKAVFDRFVKLNSF--VPGTGLGL 774

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI +S I   GG + + S +   +     +P
Sbjct: 775 SICKSIIQQLGGTIGVDSEEGKGSCFWFILP 805


>gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 596

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 164/394 (41%), Gaps = 31/394 (7%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNP 461
           + + +  G    MF  ++ Q+          K Q E I  H+++G+       RI   NP
Sbjct: 219 VRSGDEIGQLAEMFNRMSRQLKETMSEIQDEKSQAEAILTHMADGLMALNRARRIIRLNP 278

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A + +++           I+ + A   R    ++G  L  A+  ++D  R S       L
Sbjct: 279 AAQRMFQ-----------IQELQALGRRPGELAEGSGLEEALEEAWD--RNSALTRQIRL 325

Query: 522 SDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            D VL+  I PL      +  T V   D    ER            + ++  FV +VS+E
Sbjct: 326 KDRVLQAYITPLTGEGRHSGGTVVVFHDITELERL-----------ESMRREFVANVSHE 374

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++PLT +  + + L           + +++  +   +  +  LV D+L L  +D G ++
Sbjct: 375 LKTPLTTVKSYVETLLDGAADD-PEVRDRFLRVVDGETERMARLVRDLLRLTQMDEGTLR 433

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            N     + +L+ E    +  +     + +    D +    + D  ++ Q+   +L+NA+
Sbjct: 434 WNVRPQDVGELVAETVGRLRVQADRKRLTVLCEVDPETPPALCDYDKIQQVVINLLANAI 493

Query: 700 DFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           +F+  G  + +  A +  D    ++ + G  IP      +F RF            G GL
Sbjct: 494 EFTPNGGQIRVSVAPEGADAVRVTIADTGIGIPAQDLPRIFERFYRVDKARSRSMGGTGL 553

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLSI +  + L GG ++I+S  +  TT+   +P+
Sbjct: 554 GLSIAKQIVELSGGAIAIASEVDRGTTVTFTLPA 587



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEF 358
            + D+ +    IL ++   +   ++ R +   N +   +++I +L  L   P   EL E 
Sbjct: 245 EIQDEKSQAEAILTHMADGLMALNRARRIIRLNPAAQRMFQIQELQALGRRP--GELAEG 302

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
                 L E  +  +       +         T     G+           GGT+ +F +
Sbjct: 303 SGLEEALEEAWDRNSALTRQIRLKDRVLQAYITPLTGEGRH---------SGGTVVVFHD 353

Query: 419 LTVQVDLETKYNT 431
           +T    LE+    
Sbjct: 354 ITELERLESMRRE 366


>gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1138

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 3/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  +A + +T+K   + +A + K+ F+ ++S+ELR+PL +I+    LLK +K  +LN+ Q
Sbjct: 462 DLDKARKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQ 521

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y   I ++ + LL+L+N++LDLA +++G + L    I ++ L   ++        E +
Sbjct: 522 IKYATVIHSAGSDLLHLINELLDLAKIESGQIDLVEDQIDIHSLTRNIEGLFRISAEEKS 581

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I  K   D +   +F+ D  RL Q+   +LSNA  F+  G  + L     NG+  F V++
Sbjct: 582 INFKTTIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELTYKHVNGNIHFIVQD 641

Query: 726 NGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I  +  K +F  F     +   +  G GLGLSI      L GG +S+ S  +  +T
Sbjct: 642 DGIGIAPEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGST 701

Query: 784 INCRIPSK 791
               +P +
Sbjct: 702 FTFILPYR 709


>gi|225853078|ref|YP_002733311.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457]
 gi|256045221|ref|ZP_05448119.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|256114174|ref|ZP_05454928.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str.
            Ether]
 gi|256263438|ref|ZP_05465970.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565182|ref|ZP_05835666.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|265991654|ref|ZP_06104211.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 1 str. Rev.1]
 gi|265995492|ref|ZP_06108049.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 3 str. Ether]
 gi|223635641|sp|Q8YIM6|PDHS_BRUME RecName: Full=Cell-division control histidine kinase pdhS
 gi|225641443|gb|ACO01357.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457]
 gi|260151250|gb|EEW86344.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|262766605|gb|EEZ12394.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 3 str. Ether]
 gi|263002438|gb|EEZ15013.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 1 str. Rev.1]
 gi|263093447|gb|EEZ17497.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409621|gb|ADZ66686.1| PAS domain S-box-containing protein [Brucella melitensis M28]
 gi|326539324|gb|ADZ87539.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 1035

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 258/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDHPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++        F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAANQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
 gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
          Length = 868

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 163/393 (41%), Gaps = 30/393 (7%)

Query: 420 TVQVDLETKYN------TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           T Q  L +         +  ++  +  + L   V     D      N AF    +     
Sbjct: 53  TRQTSLTSPLRQPFLTASSQQLLQQVFNDLPTRVYWRNSDLEFLGGNDAFLRDIQCSTEA 112

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIP 532
           L      +      +    E D   L   + +       + +  L L ++   +E+S +P
Sbjct: 113 LEGKRDDQLAWLAKNPILQERDRLTLEHGLASC------NAEIELNLANNTRYIEHSSVP 166

Query: 533 LPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           L + Q      + ++ +++        + +  E+  +A+  K  F+ ++S+E+R+P+  I
Sbjct: 167 LYDDQKNVIGIIGSYYDISSIKSVAEQMEQAKESAEQANVAKGEFLANMSHEIRTPINAI 226

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  +L   ++   L+ KQ +Y++ I +SS  LL ++NDILD + +DAG + +      L
Sbjct: 227 VGMANLCLKTQ---LSEKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLSIERIPFDL 283

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
            D+L  +    A K ++ ++   +     + +    D  RL Q+   ++SNA+ F+  G 
Sbjct: 284 QDVLTSLADMFAYKAYDKDLEFIINLPANIPTRLFGDPLRLNQVLVNLVSNAIKFTEDGE 343

Query: 707 ----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
                 +L    D      SV + G  + E+   ++F  F        R   G GLGL+I
Sbjct: 344 INVAVTLLDKNTDKVWLRISVTDTGIGMDEEQRANLFKAFTQADSSTTRKYGGTGLGLAI 403

Query: 761 VESFINLHGGHVSISSSDEGVTTINC--RIPSK 791
               I L GG + ++S     +T      +P +
Sbjct: 404 SRRLIQLMGGDIGVTSGVGQGSTFYIELTLPMQ 436


>gi|332293070|ref|YP_004431679.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus
            4H-3-7-5]
 gi|332171156|gb|AEE20411.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus
            4H-3-7-5]
          Length = 1216

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 124/683 (18%), Positives = 258/683 (37%), Gaps = 84/683 (12%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY------ 222
              +              +K     +    +  ++   V+ +D    ++  N ++      
Sbjct: 418  QDITEQKLIDEALIEAKEKAEESKNHLNSIIKNIGDPVFVKDDQSRLVIVNEAFCTLFGF 477

Query: 223  -------KKNTETEGIVFQKA-IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
                   K   E      ++A +   ++L  + I+     S  + +   + +ST      
Sbjct: 478  ERQEIIGKTLAEEVSPAEREAFLSIDKQLIIDGIENITEESLTIREGETQRIST------ 531

Query: 275  KSYKIVRVLNSFGEAGIAIDVSKE-------ITVNDQLTHTYEILH----NLTVAIAIFD 323
            +  + +    +    G+  D+++            ++     E       NL   + +  
Sbjct: 532  RKTRFIDSNGNIFIVGVIHDITERFKTENLIKEAKERAEENEERFRILMLNLEAGVVVHA 591

Query: 324  QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR------SANKLPEQLNWKTWKEN 377
             +  +   N    ++   D  ++         L+ +       +    P     KT +  
Sbjct: 592  PDTSIVQCNYRASQILGFDEKYVQGKTGESMELKLVNLNASPLAIADYPVNKIAKTKESI 651

Query: 378  IFSV--YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
               V   K  +    TW   NG    V+ ++      + +F ++T Q   E        +
Sbjct: 652  KNQVIGLKREDKEDITWVTLNG--FPVLSSTGEIKEIVMIFIDITAQRQNEKDKLKAKLL 709

Query: 436  QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
              +T   LS+                A   +       L+              Y    D
Sbjct: 710  LDKTEKELSDA--------------QALAKIGSWLVKPLTMKMEWSKEMYNIWGYKYGKD 755

Query: 496  GWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSI-IP--------------LPNA 536
              +  + I     D+R+ L+  ++  ++S     +EY I IP              + +A
Sbjct: 756  NPEYLSVIDRVHPDDREILKNAVDEATNSGAPYKIEYRICIPDHPQKTVRAICQPIMDDA 815

Query: 537  QTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              ++    T  ++T      R L    E   ++D +K++F+ ++S+E+R+P+  I+GF++
Sbjct: 816  GNVISLAGTNQDITQQKLLSRELISAKEKAEESDRLKSAFLANLSHEMRTPMNGILGFSE 875

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL+   +     K+  Y+E I      LL+ +++I+D++ +++ I+ ++ S + LN ++ 
Sbjct: 876  LLRRKNIS--EEKRDIYLELIEKEGHRLLSFISNIVDISKIESNIIHIDNSRVNLNIIIK 933

Query: 653  EVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            ++      K+  + +++ +    D        D  +L+QI S +L NA+ F+ +G T+  
Sbjct: 934  DIYSKYLLKLENSGVKLIIEMGLDDADSFIETDENKLVQIISNLLENAIKFTKQG-TIEF 992

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
              +    +  F VK++G  I E+  K++F+RF           GVGLGLSIVE  I L  
Sbjct: 993  GYSLYEKNLKFFVKDSGIGIEEEEQKNIFDRFTQGRREQTHNLGVGLGLSIVEGLIKLLN 1052

Query: 770  GHVSISSSDEGVTTINCRIPSKE 792
            G V I S     +T    IP K+
Sbjct: 1053 GEVWIDSQIGEGSTFFFTIPYKK 1075


>gi|261419733|ref|YP_003253415.1| histidine kinase [Geobacillus sp. Y412MC61]
 gi|261376190|gb|ACX78933.1| histidine kinase [Geobacillus sp. Y412MC61]
          Length = 470

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 20/379 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            ++++ +     Y    K +    E  +HL EG+ +    G  KL N   +  +    N 
Sbjct: 99  RHISISLQKLALYEEAEKDRRLAEEIFNHLHEGIQLVDLQGTNKLMNGRMKEWFGAAANG 158

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                +       C+   +           +    DE   +   L+    +V+E    PL
Sbjct: 159 WHEMPYAEWKQQLCALVVDGRPLGAFLDQAVFGPADELSVMTYELKEKR-AVMEVYAAPL 217

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                    + V   +  +             D +K+  V  VS+ELR+PL  I+G  +L
Sbjct: 218 YRGGAKFGTIFVHRDITKQAE----------VDRMKSELVSTVSHELRTPLAGILGLAEL 267

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L    L     +Q +Y+  I   +  L+ L+ND LD+  ++AG     +  + L  ++ +
Sbjct: 268 LLNKPLAP--ERQRKYLTAIGQEAERLMALINDFLDVQRMEAGRQTYRWEPVDLVPIMEK 325

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +    A KM  +     V  + K      DR+RL Q+F+ ++ NA+ +S  G  V+++  
Sbjct: 326 IID--AEKMGTDIHTFSVSVETKRTMIRGDRERLRQLFTNLVHNAVKYSPNGGAVVIRLY 383

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             +G     V++ G  IP +    +F +F    +  +RR  G GLGL+IV+     HGG 
Sbjct: 384 EHSGCLCVDVQDEGLGIPAEALPHIFEKFFRVDNSDRRRIGGTGLGLTIVKEIAKAHGGE 443

Query: 772 VSISSSDEGVTTINCRIPS 790
           V++ S ++  +T   R P 
Sbjct: 444 VTVVSEEKKGSTFTVRFPL 462


>gi|301166797|emb|CBW26374.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 1089

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 25/394 (6%)

Query: 415 MFENLTVQV---DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           + + +T  +    LE   N     +   ++     +  + P  R    + +  +LW    
Sbjct: 557 LIQAITEMIAYLKLEEYKNDKDYERKIILESTGVALWSYYPVERRLELDDSMYNLWGY-- 614

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL--FAAIITSFDDERKSLQ-----GTLELLSDS 524
              S G +  +I A  S  + E     L  F  +I   D    S +     GTL+ +   
Sbjct: 615 ---SKGDYENDIVAWESTMHPEDKDKALQEFIEMIKYKDHYETSFRIITKSGTLKFIKAK 671

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                 +     + +    + T+ V  ++ L    E    ++E K+ F+ ++S+E+R+P+
Sbjct: 672 ADVVRDMNGKAIKVLGVNWDSTNDVIIQKELVIAKEMAEASEEAKSEFLANMSHEIRTPM 731

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G   LL  S    L  +Q   +E I +S  IL+ ++NDILD++ +DAG  +L+   
Sbjct: 732 NGILGMISLLSES---DLTKEQMDMLETIQSSGDILMTILNDILDISKLDAGKYELDIRD 788

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             + + +       +T   E  I +       +  F+  D  R+ QI    LSNA+ F+ 
Sbjct: 789 FDIRNCIENTTFLFSTLASEKGINLTSTISSVVPLFLKGDVTRIRQILVNFLSNAIKFTE 848

Query: 704 KGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
           +G   + + A + +      + SV + G  I  D  +++F  F        R   G GLG
Sbjct: 849 RGEVKIEVGAIKKSDRDVSLVISVIDTGIGIHSDAQENIFEAFSQADSSTTRVYGGTGLG 908

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LSI    I +  G V + S     T I   +P +
Sbjct: 909 LSICSKLIEIMDGEVKLESEPGKGTNITFSLPLE 942


>gi|259500799|ref|ZP_05743701.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|302190751|ref|ZP_07267005.1| two-component system sensor histidine kinase [Lactobacillus iners
           AB-1]
 gi|309804083|ref|ZP_07698164.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|312871187|ref|ZP_07731285.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|312873315|ref|ZP_07733370.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|312874960|ref|ZP_07734979.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|325913630|ref|ZP_08175992.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
 gi|259167493|gb|EEW51988.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|308163851|gb|EFO66117.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|311089705|gb|EFQ48130.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|311091195|gb|EFQ49584.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|311093201|gb|EFQ51547.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|325476989|gb|EGC80139.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
          Length = 612

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 175/416 (42%), Gaps = 30/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWMFENL-TVQVDLETKY-NTLVKVQGETID 441
            E       + NG  + HV V +N   G +    N+ +V+++   +  ++  +     + 
Sbjct: 208 EEMKDQALRISNGDYSGHVKVYANDEMGELARAFNILSVRIERSQEVSDSERRRLDNVLM 267

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N    +     EN +  G  I  +         E    DL +
Sbjct: 268 HMTDGVIATDRHGNITIINETALNFLDKTENEVK-GEPITQLLG-----LKEVTIQDLMS 321

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                      +    L L +D  L   +    +    +              L +  E 
Sbjct: 322 TQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICV--------------LHDITEQ 367

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            +  +E +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++
Sbjct: 368 QKNENEQR-QFVSNVSHELRTPLTSLRAYVEALNDGAWKNENI-APQFLGVIQNETERMI 425

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI---RIKVISDGKLG 678
            ++ND+L+L+ +D G++K++   + LND L+ +       +  + +   +I+ I   +  
Sbjct: 426 RMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQAL 485

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  +++Q+   I++NA+ +S  G  + ++  + +   I SV + G  IP      +
Sbjct: 486 WVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRKDLSRI 545

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF         ++ G GLGL+I +  +  H G +   SS+   +T    IP ++
Sbjct: 546 FDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEK 601


>gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 932

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 141/291 (48%), Gaps = 17/291 (5%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV-TDSVRAERALTEKNEALRK 564
           SFDDE         L+    +E +++     +   +F N      +AE  +    +   K
Sbjct: 281 SFDDE------EFRLVPKGTVELNMLAENFNELYRSFHNELVRRKKAEETMKAARDEADK 334

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+  +S+E+R+P+ +IIG+  LLK S    L+ KQ +YVE I  ++  LL ++
Sbjct: 335 ANRAKSEFLASMSHEIRTPINSIIGYQYLLKNSV---LSPKQREYVENIGLAAKNLLAII 391

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           N ILD + ++AG M L      ++D+LNE+   +  +     I +++  D  +  F+  D
Sbjct: 392 NQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVPRFLKGD 451

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVF 739
             RL Q+   ++SN + F+ +G   + ++    N +     FSV + G  I ++  K +F
Sbjct: 452 ITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDEQKKLLF 511

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F        R   G GLGL+I +  + L  G +++ S     +T +  +
Sbjct: 512 QVFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562


>gi|146280448|ref|YP_001170601.1| two-component sensor [Pseudomonas stutzeri A1501]
 gi|145568653|gb|ABP77759.1| two-component sensor [Pseudomonas stutzeri A1501]
          Length = 968

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 92/437 (21%), Positives = 166/437 (37%), Gaps = 18/437 (4%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNPRGGTIWMFENLT 420
           A + P+    +    ++   ++ S   ++TW  +   +T  V +     G  + +  +++
Sbjct: 265 ARRTPQPAAIEPLLHDLLQQHEDSGLRQNTWCEVQTRRTFEVRLMPTGLGDHLAIARDIS 324

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                    +         +D     + V    GR  L N A  +L       +      
Sbjct: 325 ELQRSRDSLHDQQLFLRRVVDTDDNLIFVRDAQGRFLLCNTALSALLDVRPQDIEQRHPD 384

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKS-LQGTLELLSDSVLEYSIIPLPNAQTM 539
               A+         G D  AA+ +   + R + +  T    ++   +    PL  +   
Sbjct: 385 E--VASARLLRPLLLGDDELAALASGSGELRTTEVALTDAHGTEHWFQVVKRPLRISART 442

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              V V   V   R          + +++K  F+  VS+ELR+PLT I G   +L     
Sbjct: 443 CHVVTVAVDVSLRR----------RMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIA 492

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L+ +    +     +S  L+ L+NDILD+  ++AG +  N     +  L+ +    I 
Sbjct: 493 GQLSDEARPLLTIAHKNSERLVRLINDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDIT 552

Query: 660 TKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
               +  + ++ +   +L S  A  D  R  Q+ + +LSNA+  S  G  V +   R   
Sbjct: 553 PYGQDYGVTLEFLDAPELASSEATLDPDRFAQVMANLLSNAIKHSPAGGRVTVDLRRSGE 612

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
                V++ G  IPE     +F RF         QR G GLGL+I  S +    G +   
Sbjct: 613 RLEIGVQDRGPGIPEAFRSRIFERFAQADSSDARQRGGTGLGLAITRSLVQQMNGKIGFD 672

Query: 776 SSDEGVTTINCRIPSKE 792
              +  T    ++P +E
Sbjct: 673 CQPDQGTRFWLQLPLEE 689



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 91/295 (30%), Gaps = 35/295 (11%)

Query: 33  MLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLS-KYHSLLTENNCLTIVWDGKDE 91
           ++ + ++  +LLI        +       L+        +  +LL          D + +
Sbjct: 199 LIGSLVVVALLLI--AFWAVHRNLRIRQQLAGAAQAGEARLGALLQAIPDYLYAVDHRQQ 256

Query: 92  TPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC 151
              +     +R   P     LL        H  ++       LR+         E Q   
Sbjct: 257 ISSLAAGTARRTPQPAAIEPLL--------HDLLQ-QHEDSGLRQN-----TWCEVQTRR 302

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
             ++    +G      +     I  +++E       L +     + + D+ D L++ RD 
Sbjct: 303 TFEVRLMPTG------LGDHLAIARDISELQRSRDSLHDQQLFLRRVVDTDDNLIFVRDA 356

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGES-------RKLFKEEIKKRMISSSALEKNFCE 264
            G  L  N +     +      ++   +        R L   + +   ++S + E    E
Sbjct: 357 QGRFLLCNTALSALLDVRPQDIEQRHPDEVASARLLRPLLLGDDELAALASGSGELRTTE 416

Query: 265 TVSTLEHGNNKSYKIVRVLNSFG-----EAGIAIDVSKEITVNDQLTHTYEILHN 314
              T  HG    +++V+              +A+DVS    +    T     + +
Sbjct: 417 VALTDAHGTEHWFQVVKRPLRISARTCHVVTVAVDVSLRRRMEQMKTEFISTVSH 471


>gi|17986700|ref|NP_539334.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1
           str. 16M]
 gi|17982322|gb|AAL51598.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1
           str. 16M]
          Length = 813

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 258/728 (35%), Gaps = 56/728 (7%)

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
           ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 113 LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 171

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
           +           +   R+ G    L +        E+A        L           D 
Sbjct: 172 N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDHPAAVLPKPP------LDI 215

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                  RD    I   N   ++        F K    + +      K    +   + + 
Sbjct: 216 TPTPG-RRDSDKVISLLNSCAQEKVAANQAKFLKEKERATRPEGGLTKTERNAFREIAER 274

Query: 262 FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
             +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 275 LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 328

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
            I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 329 IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 384

Query: 380 SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
              +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 385 GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 439

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 440 ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 498

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
               L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 499 YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 558

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
            LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 559 ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 618

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 619 INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 678

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
               L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 679 FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 738

Query: 732 EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 739 KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 798

Query: 782 TTINCRIP 789
           T +    P
Sbjct: 799 TVVEIVFP 806


>gi|301310170|ref|ZP_07216109.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831744|gb|EFK62375.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 632

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 130/641 (20%), Positives = 260/641 (40%), Gaps = 65/641 (10%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK---------- 235
           + +   +   K+L D  +  +W  D      +   SY  +     I  +K          
Sbjct: 2   EDIQTQLDQCKLLLDRAEVGLWEAD------FVQRSYICSDYLMSIFGKKGNNLSFFEFY 55

Query: 236 -AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
             I E  +         + S    E+ F     T E       ++     + G    A+ 
Sbjct: 56  YIIREDFRDLITTDFLSIQSVDTYEQIFPIITPTGEKWVRS--RLCERKLNNGVCVKALG 113

Query: 295 VS--------KEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           +         KE  ++  + H   I      NL V + ++D++ YL       ++L   D
Sbjct: 114 ILQILPNFKLKEEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYL-------IDLNAKD 166

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWH--LPNGQ 398
           +         D L   + S   +P+ +  K  KEN    ++ + + K  D ++     G+
Sbjct: 167 MEIFGIRSKKDVLGVNIFSNPIMPKDV-IKKLKENKSVNFRLNYSFKKVDDYYNTSKVGE 225

Query: 399 TLHVIVTS--NPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              V   S    + G     + +  + T ++    + +    V      +   G A++  
Sbjct: 226 MDIVTKASILYDQRGEPSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDL 285

Query: 453 ---DGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              +G  IK     + ++ + +   LS    I +        Y  S   ++       F 
Sbjct: 286 YTFEGYAIKQW---YENMGEKDGTPLSQIIGIYSYIHPNDAGYINSFFEEVKQGKAHHFR 342

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            E +   G       + +  +   +   +  +  +N   +   +  L    E   + D +
Sbjct: 343 REVRVKSGDGWKWICANITRNPQSVDPNKPEMICINYDITELKDSQLK--RERAEELDRL 400

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++ +LL L++DIL
Sbjct: 401 KSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNNRMLLQLISDIL 457

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +++G M L ++ + + +++NE+  S   KM + N+ +    D       +DR RL 
Sbjct: 458 DLAKIESGTMDLKFADMNVKEVINEIVTSFRIKMPD-NVALIAPQDSPECQIYSDRMRLT 516

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ S  L+NA+ ++S+G  + L       +  FSV + G  + +++   +F+RF      
Sbjct: 517 QVISNFLNNAIKYTSEG-CITLAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTF 575

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++G GLGLSI E+ +N  GG + ++S     +T     P
Sbjct: 576 --KQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|189465320|ref|ZP_03014105.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
 gi|189437594|gb|EDV06579.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
          Length = 381

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 160/338 (47%), Gaps = 16/338 (4%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G +   N A  +      + L     IR        Y  +S   DL A +     D R  
Sbjct: 39  GDLLRCNNALSAEGGCGTHELCGSCPIRRKIEET--YRAKSSFTDLEATL--DIRDRRGE 94

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +      +S   +E           ++T  ++T   +AE  L +  E    AD  K++F+
Sbjct: 95  VSECDTYVSGEYMEID----DKEGMVITVHDITRLKKAEVELHKAREKAENADRSKSAFL 150

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF++LL +    S   +++Q++E + +++ +L  L+ DILDL+ +
Sbjct: 151 ANMSHEIRTPLNAIVGFSELLAS---ASTEEEKTQFLEIVHSNNELLQQLIADILDLSKI 207

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN--IRIKVISDGKLGSFVADRQRLLQIF 691
           +AG ++  +S + +  L+ +++Q    ++ +    I+I   +         DR RL Q+ 
Sbjct: 208 EAGTLEFTFSEVDVKQLMLDIEQLFRMRLEDKAAVIQIIRETPADECIMYTDRNRLQQVV 267

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           S  ++NA+ F+ +GS +     R      F VK+ GS IPED    +F RFV       +
Sbjct: 268 SNFMTNAVKFTDEGS-ITFGYNRCAEGLYFYVKDTGSGIPEDKVNHIFERFVRVEQ--NK 324

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +G GLGL+I E  I   GG + + S     +T    +P
Sbjct: 325 KGTGLGLAICEMIIRKLGGKIGVESEYGKGSTFWFILP 362


>gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 830

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 109/492 (22%), Positives = 178/492 (36%), Gaps = 47/492 (9%)

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-- 391
           +   L E     L     +  +L           Q  ++   E I ++ K          
Sbjct: 54  AAEALAEWPAGSLPGGVIHPAILGDAAETG----QPVYRDGSERIAAIPKRLRHAAAVLP 109

Query: 392 WHLPNGQTLHVIV-------TSNPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETID 441
           W L +G     ++       T+  RG     + +   L   V+   +   L    G  + 
Sbjct: 110 WTLDDGSAGAFVLVRAGAAFTAEERGYLESLLGVLGLLAQLVNTTARAERLAARFGAIVQ 169

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            L   +     DG     N A  +L        +     R  AA  +     S+  D   
Sbjct: 170 TLPHALVFIDDDGSEAFVNGAAAALLGISP---AVTEPARVSAAMHAMRARASEQEDALR 226

Query: 502 AIITSFDDERKSLQGTLELLS-----DSVLEYSIIPLPNAQTMLTFVNVTDSVRA----- 551
            I T+   +R+     L L +      +VL  S  P     T        D         
Sbjct: 227 TIATAVAHDREIRDVRLSLAATESAPRTVLSVSSTPTRERGTPGRLWLYIDITARHLALE 286

Query: 552 -----ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                  AL     A   A+E K+ F+  +S+ELR+P+  ++G   LL    L    S+ 
Sbjct: 287 QLEANNAALETARHAADAANEAKSRFLATMSHELRTPMNGVLGMAGLLLDMGLAPEPSE- 345

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YVE I +S   LL ++NDILD + ++AG+ +L      L   + E    +A    +  
Sbjct: 346 --YVETIRSSGDALLAIINDILDFSKLEAGMFELELQPFSLRSCVEEAFDLVAVSAAKKR 403

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGD 718
           + + + I++    +   D  RL Q+   +LSNA+ F+  G  VI       +   R    
Sbjct: 404 LELALRIAEDVPWTVRGDITRLRQVIVNLLSNAIKFTDVGEVVIAIACAPKIDCQRAGVR 463

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV++ G  IP ++ KS+F  F         +  G GLGL+I    + L  G + + S
Sbjct: 464 LHLSVRDTGVGIPAELHKSLFRSFSQLDASISRKYGGTGLGLAICARLVALMDGRIWVES 523

Query: 777 SDEGVTTINCRI 788
                 T +  I
Sbjct: 524 EQGAGATFHFTI 535



 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 69/265 (26%), Gaps = 47/265 (17%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +Y      E   +         +    +     +   + ++  E ++ +      +  ++
Sbjct: 52  AYAAEALAE---WPAGSLPGGVIHPAILGDAAETGQPVYRDGSERIAAIPKRLRHAAAVL 108

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYE----------------------------IL 312
                 G AG  + V        +     E                            I+
Sbjct: 109 PWTLDDGSAGAFVLVRAGAAFTAEERGYLESLLGVLGLLAQLVNTTARAERLAARFGAIV 168

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             L  A+   D +    F N +   L  I  A   T P+          A    ++    
Sbjct: 169 QTLPHALVFIDDDGSEAFVNGAAAALLGISPA--VTEPARVSAAMHAMRARASEQE---D 223

Query: 373 TWKENIFSVYKSSETHKDTWHLPNG-----QTLHVIVTSNPRGGT---IWMFENLTVQ-- 422
             +    +V    E       L          L V  T     GT   +W++ ++T +  
Sbjct: 224 ALRTIATAVAHDREIRDVRLSLAATESAPRTVLSVSSTPTRERGTPGRLWLYIDITARHL 283

Query: 423 -VDLETKYNTLVKVQGETIDHLSEG 446
            ++     N  ++      D  +E 
Sbjct: 284 ALEQLEANNAALETARHAADAANEA 308


>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 916

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 120/250 (48%), Gaps = 11/250 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +    L    E+   A + K+ F+  +S+E+R+P+  I+G T+LL  ++   LN  Q
Sbjct: 247 EVTKRTAELVLAKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQ---LNRDQ 303

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++ E + +S   LL ++NDILD + +++  M+L      L  L+ +     A    +  
Sbjct: 304 QRFAETVQSSGRHLLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKG 363

Query: 667 IRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI 720
           + +  + I   +      D  RL QIF+ ++SNA+ F+S+G  VI     +AA    +  
Sbjct: 364 LELAAQFIPPNRAFMVRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEAAGSRVNLR 423

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  IP +  K +F +F        R   G GLGL+I +  + L GG + I S+ 
Sbjct: 424 ICVEDTGIGIPPEYHKKIFQQFSQADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDSTP 483

Query: 779 EGVTTINCRI 788
              T     +
Sbjct: 484 GQGTKFQINL 493


>gi|16801127|ref|NP_471395.1| hypothetical protein lin2061 [Listeria innocua Clip11262]
 gi|16414562|emb|CAC97291.1| resE [Listeria innocua Clip11262]
          Length = 596

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 170/400 (42%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNISALRQEKEQLSNILVGMADGVIKFSVDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I    +   N++              D+++S  G +
Sbjct: 281 SNPPAEEFLHNWFFSPENTEKVL-IPTALNDLLNDT-------------LDKKESQVGEI 326

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              SD      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 327 -TFSDRTYVAILTLLYTGEHVRSIVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 435 QMDNQKLPLAPLLRKVIANFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNA 494

Query: 699 MDFS-SKG--STVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  +  +G    VILK   D    + + +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYAGKVILKQTIDETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 555 AVGTGIGLAIVKNIVEAHNGKISVESVLGKGSDFIITLPL 594


>gi|163744984|ref|ZP_02152344.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161381802|gb|EDQ06211.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 547

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 114/568 (20%), Positives = 208/568 (36%), Gaps = 59/568 (10%)

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV----SK 297
           KL  +         +A+  ++    S L  G      +V  +   G     ++       
Sbjct: 4   KLINKRTAATFFLGTAISGSWYTATSALLTGE--IIPVVGAIVLAGLTPFGVNALRPGGD 61

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +   N  +        +  + + I D    L+  N  F+EL       L   P +    E
Sbjct: 62  DSLDNHDMAQRLRAFDSHAI-VNILDTCGVLKQVNDRFIELTGYTRDQLIGQPVSMLYNE 120

Query: 358 FLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GG 411
             R   +         KTW+             +      +G+ +    T  P     G 
Sbjct: 121 RSRELASEMRAALKQGKTWQG------------ETPLRCADGRVIQTQCTVMPLFNKSGD 168

Query: 412 TIWMFENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKT 469
                  ++ + D+      L +    ET+  L + + +   +  R    N    S    
Sbjct: 169 WTGS---ISARTDVTHANELLAERDTAETLYELRDDIWIVDAETHRFSYMNRVAMSRTGW 225

Query: 470 EENRLSPGTHIRNIAATCSRY--YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                S    + ++A     +              ++  FD E          +  +  +
Sbjct: 226 RTEPYSE-RTLDDLAEKSGSHAILEACQSLAASGKVMAQFDTE----------MFGNHFQ 274

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE--ALRKADEIKNSFVQHVSYELRSPLT 585
            ++  LP               +A R L   N+   +   + +K+ F+  VS+ELRSPLT
Sbjct: 275 VTVKLLPIGG------------KAGRFLIMLNDISDIIGEERMKSEFISMVSHELRSPLT 322

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I G   LL +   G L SK    +E    ++  L+ ++NDILDL  +  G ++ N    
Sbjct: 323 SIKGSMGLLLSRAAGELPSKARALLEISHRNADRLVLIINDILDLEKISTGQLEFNLEET 382

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            + +LL E   + ++    + +RI+V +         D  R++Q+ +  LSNA  FS  G
Sbjct: 383 DIAELLRETSAANSSLEQRHGVRIQVENTDTPMQVTTDPNRVIQVLTNFLSNAAKFSKPG 442

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
             + ++A  ++ +   SV + G  IP      VF RF   ++    ++ G GLGLS+ ++
Sbjct: 443 ERITIRAEENDHELRISVSDRGQGIPASEEHKVFQRFADLSNSKRAEKGGTGLGLSVCKA 502

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            +   GG +   S +   TT    +P K
Sbjct: 503 IVENLGGKIGFDSREGFGTTFYFTLPKK 530


>gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035393|gb|ABF62251.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 741

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 150/370 (40%), Gaps = 25/370 (6%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           +T  + +        + V +    G+   +NPA R L    +     G  I  +      
Sbjct: 238 DTAAQGRTLMFYATQDPVILVDAGGQFVSANPAARQLIG--DRIPDYGEPIEQLPEVGPL 295

Query: 490 YYNESDGWDL-----FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
             +      L           +FD     +   ++             +P     ++ V+
Sbjct: 296 VKDLVKAGGLGKPGPIRLAGRAFDPRAVPIDSPIQ-----------AQIPLLGWCISLVD 344

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  RA  AL E       A+  K  F+ +VS+E+R+PL  ++G   +L  +K   L+ 
Sbjct: 345 ITERERAAEALREALSLAEAANRAKTQFLANVSHEIRTPLNGVLGMASVLGETK---LDE 401

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q ++++ I  S  +LL  + D+LDL+ V+AG M L      L + L   +   + +  E
Sbjct: 402 EQQEFLQVIEDSGQVLLTTIGDVLDLSKVEAGKMTLETKPFTLRNALEGARALFSARAKE 461

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-IFS 722
             I + +     L   +  D  R  Q+   ++SNA+ F+  G+  I  A  +NG   +  
Sbjct: 462 KGIGLHLEMHDDLPRVILGDDHRFRQVVHNLVSNAIKFTETGAVTISAAPAENGSILLVR 521

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP +    +F  F         +  G GLGLSI     +L GG + ++  +  
Sbjct: 522 VSDTGPGIPAEARDMIFQPFQQVEGGDARKFGGTGLGLSISRQLCHLMGGSLQVADDEPQ 581

Query: 781 VTTINCRIPS 790
             T   R+P 
Sbjct: 582 GATFEIRLPL 591


>gi|298249868|ref|ZP_06973672.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547872|gb|EFH81739.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 852

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 124/674 (18%), Positives = 243/674 (36%), Gaps = 85/674 (12%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVF-----------------KVLFDSLDFLVWH 208
            RI   +G Y +LA T         H+                      L D++  LVW 
Sbjct: 211 ARIRPQEGWYLDLAVTITPHLDADRHVEYLIYAGRDITARKCAEAEIHALVDAIPQLVWT 270

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRMIS--------SSALE 259
               G     N  ++  T   G+  ++A GE   +    E ++R+ S          A E
Sbjct: 271 ARPDGSHDSFNQRWRDYT---GLSIEEAQGEGWLQCLHPEDRQRVRSIWQCAVQTGGAYE 327

Query: 260 KNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILH 313
                   T   G  + +  + + V +  G+     G   D+  +     QL  + E   
Sbjct: 328 TELRLRHGTT--GEYRWFLARAMPVRDETGQIMKWFGTCTDIEDQKRTEQQLKESQEHFR 385

Query: 314 NLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
            L   +         +  + + NR + +           + + ++L ++       PE  
Sbjct: 386 VLAETVPQLVWTTQPDGRVDYVNRRYCQYT---------HAAFEQLQDYGWRQFLHPEDA 436

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPR----GGTIWMF---ENL 419
            +           ++ E ++  +   NG T      +  + P     G  +  F    ++
Sbjct: 437 EYIVALRQHT--LQTGEPYEIEYRFRNGNTGSYRWFLTRAMPIRDETGQVVKWFGTCTDI 494

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGT 478
             Q   E       +     ++    G+ +   +G +I  +N  F  +       L  G 
Sbjct: 495 EDQKRTEEALRQSQERVSTLMNSNIIGINI--AEGEQIVDANDTFLRMTGYTREDLHAGN 552

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                       +      +  A  + + ++       T         + S +P+   + 
Sbjct: 553 I----------NWLHMTPPEYLARTLQAHEELDTQQSMTPYEKEYVCKDGSRLPVVVGRV 602

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            L             A+   N A ++ ++ K+ F+   S+EL++PLT +   T L +   
Sbjct: 603 TLQANPSQAI-----AIVLDNSARKELEQRKDDFISMASHELKTPLTALKMQTQLARKRL 657

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 + +  +  +      L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++
Sbjct: 658 ERQSPHEAATVLSKVERPVKQLERLIGELLDVSKIQAGRLEYQQETVDLDTLLHEVADTM 717

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                 + I ++ +    L   +ADR RL Q+F+ +LSNA+ +S    TV +  +     
Sbjct: 718 QHAHPSHRILVRGVVQASL---LADRDRLGQVFTNLLSNAIKYSPGAETVEMDLSASEDA 774

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               V ++G  IP +    +F+RF   A   Q+   G+G+GL IV   I  HGG +++ S
Sbjct: 775 VTIRVHDHGLGIPREQRDKIFDRFYRVAGPKQKAIPGLGMGLYIVAEIIKGHGGTITVDS 834

Query: 777 SDEGVTTINCRIPS 790
                +T    +P 
Sbjct: 835 KVGKGSTFTVTLPK 848



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 119/385 (30%), Gaps = 44/385 (11%)

Query: 73  HSLLTENNCLTIVWDGKDETPE--IIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA 130
           H+L+       +VW  + +        +      +   +     +   L      ++   
Sbjct: 258 HALVDAIPQ--LVWTARPDGSHDSFNQRWRDYTGLSIEEAQGEGWLQCLHPEDRQRVRSI 315

Query: 131 TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY-------SELAETTL 183
            +   + G +++     ++    +    ++ +          G         +++ +   
Sbjct: 316 WQCAVQTGGAYETELRLRHGTTGEYRWFLARAMPV---RDETGQIMKWFGTCTDIEDQKR 372

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
             ++L      F+VL +++  LVW     G + + N  Y + T       Q        L
Sbjct: 373 TEQQLKESQEHFRVLAETVPQLVWTTQPDGRVDYVNRRYCQYTHAAFEQLQDYGWRQF-L 431

Query: 244 FKEEIK-----KRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIA 292
             E+ +     ++    +               G+ + +  + + + +  G+     G  
Sbjct: 432 HPEDAEYIVALRQHTLQTGEPYEIEYRFRNGNTGSYRWFLTRAMPIRDETGQVVKWFGTC 491

Query: 293 IDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            D+  +    + L  + E +  L     + I I  +   +   N +F+ +       L  
Sbjct: 492 TDIEDQKRTEEALRQSQERVSTLMNSNIIGINI-AEGEQIVDANDTFLRMTGYTREDLHA 550

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-----HVI 403
              N      +      PE L             +S   ++  +   +G  L      V 
Sbjct: 551 GNIN---WLHMTP----PEYLARTLQAHEELDTQQSMTPYEKEYVCKDGSRLPVVVGRVT 603

Query: 404 VTSNPRGGTIWMFENLTVQVDLETK 428
           + +NP      + +N + + +LE +
Sbjct: 604 LQANPSQAIAIVLDN-SARKELEQR 627



 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 11/149 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +L  L  A+ + D      + N S   +       +   P        L S    
Sbjct: 16  ETLVTLLETLPGALFVIDDAEMTVYANASAQSILGATQEEVCGQPLWG-CAPQLVSTALY 74

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
              L  +  ++     Y+S  T             H  +     G  ++  EN T     
Sbjct: 75  QAVLKARQTRKLTEVEYRSPVTQ---------TWFHAQIMPTGVGLAVFFQEN-TEPKRF 124

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           +       +     ++ +S+ VAV  P+G
Sbjct: 125 KDALRQSEQKYLNLLESISDRVAVLTPEG 153


>gi|313623104|gb|EFR93377.1| sensor histidine kinase ResE [Listeria innocua FSL J1-023]
          Length = 596

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 170/400 (42%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNISALRQEKEQLSNILVGMADGVIKFSVDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I    +   N++              D+++S  G +
Sbjct: 281 SNPPAEEFLHNWFFSPENTEKVL-IPTALNDLLNDT-------------LDKKESQVGEI 326

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              SD      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 327 -TFSDRTYVAILTLLYTGEHVRSIVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 435 QMDNQKLPLAPLLRKVIANFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNA 494

Query: 699 MDFS-SKG--STVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  +  +G    VILK   D    + + +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYAGKVILKQTIDETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 555 AVGTGIGLAIVKNIVEAHNGKISVESVLGKGSDFIITLPL 594


>gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           CIP 102972]
 gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           CIP 102972]
          Length = 1268

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/397 (21%), Positives = 166/397 (41%), Gaps = 35/397 (8%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + +  + +   + N    +Q   +      +     DG I + NP+   L       +  
Sbjct: 368 QQVAERTEAMAQINA---MQRTILSSAGYAIIASDLDGIITVFNPSAEKLLGYTAAEMVG 424

Query: 477 GT-----HIRNIAATCSRYYNESDGWDL--------------FAAIITSFDDERKSLQGT 517
                  H+    AT ++  ++  G  +              F  I       +      
Sbjct: 425 VCTPSRFHLMEEVATRAKQLSQELGETIHPGFDVFVAKARLGFVDITRWTYVHKNGHHIP 484

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           + L+   +L+    P+     +    ++T++++ E+ L E  E   +A+  K+ F+ ++S
Sbjct: 485 IRLIVSCLLDDHQEPV---GYLGIAYDLTETLQREKELAEAKELAEQANRAKSDFLANMS 541

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+  I+G   + + +    LN +Q  Y+     ++  LL L+NDILD + V+AG 
Sbjct: 542 HELRTPMNAILGLLQIAQNT---DLNKQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGK 598

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILS 696
           M++      L +L++E    +++ +   ++ I    D  + ++ + D  RL QI   +  
Sbjct: 599 MEIEQQPFSLPELMHETGILLSSNLQHKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAG 658

Query: 697 NAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
           NA+ F+  G   V ++    NGD      +V + G  + E+  + VF  F         +
Sbjct: 659 NAIKFTEAGEVKVSIQTESHNGDRCVLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRR 718

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             G GLGLSIV+  + L  G V + S     +  +  
Sbjct: 719 YGGTGLGLSIVKHLVGLMEGSVQVKSEQGVGSEFSFT 755


>gi|254424881|ref|ZP_05038599.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192370|gb|EDX87334.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 762

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 162/401 (40%), Gaps = 33/401 (8%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + +  +  +               ++L   +A      R + +N ++          +
Sbjct: 358 LQQEIQERKQIGKALRQSEAQLRLITNNLPVLIAYIDCHQRYQFNNLSYEQWLGFSPVDM 417

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           + G  I+ +         +     + +    +++ E     G      D  +  + IP  
Sbjct: 418 A-GKTIQQVIGAAHYRSIQPHIETVLSGQQVTYESELTFRDG-----RDRSVSVTYIPHI 471

Query: 535 NAQTMLTFVNVTDSVRAER-------------ALTEKNEALRKADEIKNSFVQHVSYELR 581
                      +DS   ++             ALT      +  + +K+ F+  VS+ELR
Sbjct: 472 ETAKEPKSSQASDSDEHKQNNRRDSRQVKGFFALTTDISDRKAIERMKDEFIAVVSHELR 531

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT+I     LL T  LG L ++  + +     ++  L+ LVN++LDL  +++G + L+
Sbjct: 532 TPLTSIHTSLKLLATGLLGQLLAEGQEMLTVADENTDRLVRLVNNVLDLQRIESGEVTLD 591

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                  +LL+E  +S+ T   ++NIRI+  ++    S  AD   +++  + +L NA+ F
Sbjct: 592 AQECEAAELLDEAVESVLTIAQQHNIRIEAHAES--LSIWADPDYIVRALTNLLGNAIKF 649

Query: 702 SSKGSTVILKA----------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RG 749
           S  G  V L            + D    +F V++NG  IP +   S+F RF         
Sbjct: 650 SPAGEVVCLTVKAVSSSLEKPSTDQEMALFCVQDNGQGIPHNKLDSIFERFQQVDSSDSR 709

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++ G GLGL+I    +  HGG +   S     +  +  +P 
Sbjct: 710 KKGGTGLGLTICRKIVEQHGGKIWAESQLGKGSRFSFTVPL 750


>gi|219850111|ref|YP_002464544.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219544370|gb|ACL26108.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 880

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 173/386 (44%), Gaps = 36/386 (9%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRNI 483
           LE +     ++    +  L +GV V    G I   N A  R L +  E  L    H   I
Sbjct: 504 LERQQRETSQIT-AILQSLLDGVLVCDIHGSILSVNQAAGRILHRPIEELLLWNMH-DLI 561

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQTMLT 541
               S +  +    +LF   +T+  D       T   + ++ +  S+ P+   N +T+  
Sbjct: 562 QHCLSTHAADLPLEELFRRPLTT--DGTPRTFSTTTTIGNATINVSLSPVLNENDRTLGA 619

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            + + D  R   A           D +KN F+  +S+ELR+P+T I GFT LL    LG 
Sbjct: 620 LLVLRDITREVEA-----------DRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQ 668

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN  Q ++V  I  ++  ++NL+ND+L++  +++G ++L + ++ L + L+ V   + + 
Sbjct: 669 LNDTQREFVNTIYNNTERMINLINDVLEITKIESGSIELEWRSLHLAEALSGVIAELQSH 728

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------- 714
           + +   ++ +     L    AD  RL QI   +L NA+ ++  G  + + A         
Sbjct: 729 ISQRQHQLTISIPPGLPLIRADAMRLHQILYHVLLNAVKYTPAGGKITIAAREILNVDFP 788

Query: 715 ---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
                    ++   + S+ + G  I  +    +F+RF    +  + +  G GLGLSIV+ 
Sbjct: 789 EPVRSILHTNHRYLLLSISDTGVGIRPEDLPRIFDRFFRAENPLKVEAGGTGLGLSIVKP 848

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + L GGH+ + S+    +T    +P
Sbjct: 849 LVQLLGGHIWVESTVGQGSTFYIALP 874


>gi|229000253|ref|ZP_04159822.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
 gi|229007776|ref|ZP_04165364.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228753484|gb|EEM02934.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228759585|gb|EEM08562.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
          Length = 611

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 152/396 (38%), Gaps = 28/396 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 233 VKVHSHDEIGQLALAFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 292

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 293 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 345

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            D  +  FV +VS+E
Sbjct: 346 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IDRERREFVANVSHE 391

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 392 LRTPLTTMRSYLEALSDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 450

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 451 LMKEWVDFTDFFNNVIDRFEMS-KEQNVIFKRSFSKKSRFIDMDADKITQVLYNIISNAL 509

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++  + +F RF         Q  G GLG
Sbjct: 510 KYSPEGGTVTYRLRDREDMLEISVSDQGMGIPKENVEKIFERFYRVDKARSRQMGGTGLG 569

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792
           L+I +  I  HGG +   S +   TTI   +P +KE
Sbjct: 570 LAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPMAKE 605


>gi|171056738|ref|YP_001789087.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170774183|gb|ACB32322.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 508

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 144/289 (49%), Gaps = 6/289 (2%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S  +  + +   L  ++    E  I  +PN   +       D  R    L      +  A
Sbjct: 218 SLVEPVREMDARLAEIAAGQFERRI-DIPNRDELGALA--ADLNRMSAELGRLVREVEAA 274

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K++F+ ++S+ELR+PL  IIGF+++L     G +N+KQ +Y+  I AS   LL L+N
Sbjct: 275 NRNKSAFLANMSHELRTPLNAIIGFSEVLIEQMFGEVNAKQLEYLRDIHASGHHLLTLIN 334

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LDL+ ++AG M+L  S   L +LL+     +  +   + +R+ +     LG +VAD +
Sbjct: 335 DVLDLSKIEAGRMELQPSRFHLPELLDNSLTLVRERAANHGLRLTLDVQDGLGDWVADPR 394

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           ++ Q+   +LSNA+ F+  G  V L+A R D G    +V + G  I  +    VF  F  
Sbjct: 395 KIKQVVVNLLSNAVKFTPAGGHVTLRARRIDAGTAEIAVIDTGVGIAPEEQAQVFEEFRQ 454

Query: 745 N--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  +  G GLGL++   F+ LHGG + + S+    +T    +P +
Sbjct: 455 AGTDPLRKSEGTGLGLALARRFVELHGGTLRVDSAPGRGSTFAFTLPDR 503


>gi|161619546|ref|YP_001593433.1| PAS domain-containing protein [Brucella canis ATCC 23365]
 gi|254704851|ref|ZP_05166679.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|260565909|ref|ZP_05836379.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261755546|ref|ZP_05999255.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 3 str. 686]
 gi|223635609|sp|A9M715|PDHS_BRUC2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|161336357|gb|ABX62662.1| PAS domain S-box [Brucella canis ATCC 23365]
 gi|260155427|gb|EEW90507.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261745299|gb|EEY33225.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 3 str. 686]
          Length = 1035

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNYVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|295106297|emb|CBL03840.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 554

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L E N  LR  +  K+ F+  +S+ELR+PLT+II FT+LL  +     + K+++ 
Sbjct: 305 RQRAQLEEANGRLRDENRYKSEFLAMMSHELRTPLTSIIAFTELLNRNS-EPADEKEAET 363

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I A+S  LL ++NDIL+++ +DAG +++N  T+ L D+   V+  +    +   I  
Sbjct: 364 RREIEANSRALLLMINDILEMSRLDAGRIEMNRETVDLGDIAGMVQAVVQPLANRKGIAF 423

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNG 727
               D  +    AD ++L  +   +  NA+ F+ +G  V L  +   + G     V + G
Sbjct: 424 ACEIDPDVPLVTADFEKLRHVLENLCGNAVKFTPEGGDVRLSISWHPECGQVWLRVADTG 483

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +   + +F+RFV       RR  G GLGLS+ + +  +HGG +S+ S     +   
Sbjct: 484 IGIAKKDQRRIFDRFVQADSSASRRYNGTGLGLSLAKEYAEMHGGTISVESELGHGSVFT 543

Query: 786 CRIP 789
            RIP
Sbjct: 544 VRIP 547


>gi|298247503|ref|ZP_06971308.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550162|gb|EFH84028.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 635

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 230/635 (36%), Gaps = 51/635 (8%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E     ++L      F+VL +++  LVW     G   + N  ++  T       Q+    
Sbjct: 24  EQKRAEQQLKASEENFRVLAETVPQLVWTAQPDGLHEYTNQRWRDYTGFAPERVQRWDHL 83

Query: 240 SRKLFKEEIKKRMISSSALEKNF----CETVSTLEHGNNKSY--KIVRVLNSFGEA---- 289
                 +  + + +   AL+          +   + G  +    + + V +  G+     
Sbjct: 84  QFLHPDDRARNQALWRHALDTGEMFECEGRLRNGQTGVYRWVLTRAMPVRDDTGQIVKWF 143

Query: 290 GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G   D+ K+     QL  + E L      +   + +   +    + N+ + +   +    
Sbjct: 144 GTCTDIEKQKRAEQQLKESRESLRVLAETVPQQVWVTRSDGQHDYMNQRWRDYTGLTHEH 203

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           + ++      L+F+   ++   Q  W    ++        E  +   +  NG+    +  
Sbjct: 204 IQSDRWAH--LQFIHPDDRAGNQALW----QHALDTGTMYEHEERLRNGQNGEYRWFLTR 257

Query: 406 SNP---RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           + P    GG I        ++  Q   E       +     ++    G++V   + +I  
Sbjct: 258 AMPMRDEGGQIVKWFGTSTDIEDQKRAEEALRQSQERASVLMNSSMIGISVIEGE-QIVD 316

Query: 459 SNPAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +N  F  +       L  G  ++  +              +L      +++ E       
Sbjct: 317 ANDTFLRMTGYTREDLRAGRMNVMRMTLPEHLACTRQAHQELTTQQSVTYEKE------- 369

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                 S L   +  +   Q  L  ++      A + L          ++ K+ F+   +
Sbjct: 370 YVCKDGSRLPVLVCGVVLKQHPLQAISFVLDNSARKEL----------EQRKDDFISMAN 419

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++PLT +     L++         + +  +  +      L  L+ ++LD++ + AG 
Sbjct: 420 HELKTPLTAVKLQIQLVRKRLEKHSQPEAATALARVEGPIKQLERLITELLDVSRMQAGS 479

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++     + L++LL EV  +I      + I   ++      S V DR RL Q+F+ ++SN
Sbjct: 480 LEYRRERVDLDELLREVTATIHHLHPSHTI---LVCGSVRASLVGDRDRLGQVFTNLISN 536

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           A+ +S     V +  +         V+++G  IP +    +F RF       QR   G+G
Sbjct: 537 AIKYSPDAEAVEVDLSPSEDAVTVHVRDHGLGIPREQRDKIFERFYRVTDLRQRAIPGLG 596

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +GL IV   +  H G +++ S+    +T    +P 
Sbjct: 597 MGLYIVAEIVKHHEGTITVDSTVGKGSTFTVTLPL 631



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/407 (11%), Positives = 121/407 (29%), Gaps = 53/407 (13%)

Query: 56  NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE-----TPEIIGQLHQRIDIPQTDT 110
           +E      ++      +  L        +VW  + +     T +                
Sbjct: 23  DEQKRAEQQLKASEENFRVLAETVPQ--LVWTAQPDGLHEYTNQRWRDYTGFAPERVQRW 80

Query: 111 DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND-------CAIKIEG-RVSGS 162
           D L F   L      +           G+ F+     +N           +    R    
Sbjct: 81  DHLQF---LHPDDRARNQALWRHALDTGEMFECEGRLRNGQTGVYRWVLTRAMPVRDDTG 137

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
                     G  +++ +     ++L       +VL +++   VW     G   + N  +
Sbjct: 138 QIVKWF----GTCTDIEKQKRAEQQLKESRESLRVLAETVPQQVWVTRSDGQHDYMNQRW 193

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKK------RMISSSALEKNFCETVSTLEHGNNKS 276
           +  T       Q       +    + +       +    +       E +   ++G  + 
Sbjct: 194 RDYTGLTHEHIQSDRWAHLQFIHPDDRAGNQALWQHALDTGTMYEHEERLRNGQNGEYRW 253

Query: 277 Y--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
           +  + + + +  G+     G + D+  +    + L  + E    ++++  + I++  +  
Sbjct: 254 FLTRAMPMRDEGGQIVKWFGTSTDIEDQKRAEEALRQSQERASVLMNSSMIGISVI-EGE 312

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            +   N +F+ +       L                  LPE L          +  +S  
Sbjct: 313 QIVDANDTFLRMTGYTREDLRAG-------RMNVMRMTLPEHLACTRQAHQELTTQQSV- 364

Query: 387 THKDTWHLPNGQTLH-----VIVTSNPRGGTIWMFENLTVQVDLETK 428
           T++  +   +G  L      V++  +P     ++ +N + + +LE +
Sbjct: 365 TYEKEYVCKDGSRLPVLVCGVVLKQHPLQAISFVLDN-SARKELEQR 410


>gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS
           and HAMP domains [Synechococcus sp. PCC 7002]
          Length = 1280

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 157/379 (41%), Gaps = 25/379 (6%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E +  +  +E +     +     I   ++G+  +         + ++  L   +E+ L P
Sbjct: 573 EEVRQRELIEQQLRQSEERYELAIAATNDGIWDWDLRSDQVYRSRSWFRLLGYKESNLQP 632

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVLEYSIIP 532
               R +    +   +  D     AA+         S Q    L         +      
Sbjct: 633 RITGRQM---WADLVHPDDLAQAQAAMTNHLQGLTASYQNVHRLRHCDGQYRWILSKAKC 689

Query: 533 LPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           L + Q      + T  ++TD V AE  L    E   +A+  K+ F+  +S+E+R+P+  +
Sbjct: 690 LKDEQDNPYRIVGTITDITDKVEAEIQLKLAKEDAEQANRAKSEFLATMSHEIRTPMNAV 749

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG  +LL+ +    L ++Q ++++ I  S + LL ++NDILD + +++G  +L      L
Sbjct: 750 IGMAELLRDT---DLTAQQQEFIDIIRNSGSNLLAIINDILDFSKIESGKFELELQPFNL 806

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
              L      ++T+     I +  I D  +    + D  R  QI   +L NA+ F+++G 
Sbjct: 807 QTCLENCLDLMSTRAIAKPIYLSYILDPDVPHHLMGDVTRFQQIMLNLLGNAVKFTNRGD 866

Query: 707 TVI----LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
             +    +  A  +GD     F++ + G  IP      +F  F        RR  G GLG
Sbjct: 867 VSLWVQKVPTATGDGDQVCLRFAILDTGIGIPAQQMTRLFQPFSQGDASTSRRYGGTGLG 926

Query: 758 LSIVESFINLHGGHVSISS 776
           L I +  + L GG + + S
Sbjct: 927 LVISKRLVELMGGKLWVES 945


>gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 848

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 136/301 (45%), Gaps = 12/301 (3%)

Query: 500 FAAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLPNAQT--MLTFVNVTDSVRAE--RA 554
            A  + SF   R  ++ G +   S+   EY +    N +   +    N      AE    
Sbjct: 547 IAVWMASFLTRRITAVVGGIHRFSEQETEYRLPVQGNDEMASLAISFNQMADRVAESFVR 606

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +   +A  +K+ F+ ++S+ELR+PL  IIGF++L++       + +  +  + I 
Sbjct: 607 LDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEAA---DDETRENADIIE 663

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL LVN ILD+A ++AG M L+   + L  L+ E      +      I +     
Sbjct: 664 KSSRHLLELVNSILDIAKIEAGAMTLSIQEVKLAPLVAEAAAVHQSAAQGKGITLSSRVA 723

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           G    +  AD  RL QI   +LSNA+ F+  G  V L         +F V + G+ IPE 
Sbjct: 724 GDCPATIQADPLRLRQILHNLLSNAVKFTETGE-VALSVDLQPDHLVFKVSDTGAGIPEA 782

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           M  ++F +F            G GLGL++    + L GG + + S+    TT +  +P  
Sbjct: 783 MLHAIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGVIGVESTVGKGTTFHFTLPLH 842

Query: 792 E 792
           +
Sbjct: 843 Q 843


>gi|89070246|ref|ZP_01157570.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89044166|gb|EAR50324.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 552

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 122/529 (23%), Positives = 199/529 (37%), Gaps = 53/529 (10%)

Query: 276 SYKIVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
              +  V    G     +       +      QL H    L+   + + + D    +   
Sbjct: 39  WLGVSVVAVCAGLVATRLRAQTAPREPSETEKQLAHEVRALNAHAI-VLVADSRMRIVHV 97

Query: 332 NRSFVELWEIDLAFLATNPSNDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           N  FVE      + L   P++   L  +            + KTW               
Sbjct: 98  NDRFVEASGFTRSELVGRPTSWIYLSNDQKTHGEICRHIFDGKTWSGETR---------- 147

Query: 390 DTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                 +G       T  PR        GT+ +  ++T       + + +       +  
Sbjct: 148 --LRCKDGTYRWTQTTIIPRLDENGKVIGTVGIRTDITASKTASEERDIV-----SALHR 200

Query: 443 LSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           LS+ V +F  D  RI   N    SL    E R                  +     D   
Sbjct: 201 LSDAVVMFSADSFRILYLNETAMSLLDWNEARYPTKRMFD---------IDFEHDPDEVR 251

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           +++      +K + GT   LS    E  +   P    +          R    L + +E 
Sbjct: 252 SVL------QKLVNGTANSLS---FEIRLSDRPFLANLQLVRPAAGEARFVAILRDLSER 302

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             + D  KN F+  VS+ELRSPLT+I G   L+ +   G ++ K ++ VE    ++  L+
Sbjct: 303 -EEMDRAKNEFISTVSHELRSPLTSIKGAMGLVLSGAAGEISPKAAELVEIAHRNADRLV 361

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +VNDILDL  + AG M+       L  +L E + +         ++I V          
Sbjct: 362 LIVNDILDLEKIAAGRMEFTLERHDLMVILREARAANNAYAERFQVKISVRPPAAPAWAN 421

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  R+LQ+ + +LSNA  FS  GS ++   + + G    SV + G  IP++   ++F R
Sbjct: 422 VDADRILQVLTNLLSNAAKFSRPGSEILATVSTEGGRHTVSVTDRGVGIPQEALATIFER 481

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F    + G    RG GLGLSIV++ +  HGG VS+ S+    TT++  +
Sbjct: 482 FQQVDNPGHNAPRGSGLGLSIVKAIVESHGGSVSVDSTPGEGTTVSFTL 530


>gi|89093358|ref|ZP_01166307.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92]
 gi|89082337|gb|EAR61560.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92]
          Length = 1068

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 166/371 (44%), Gaps = 15/371 (4%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             +       +D ++EG+ V   +  + L+N +F  + +    ++       ++     R
Sbjct: 169 QAVPDRVRSALDTMAEGLLVLDKNQNVVLANQSFSDMVERSAEKMIGVK--ASVFPWHDR 226

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY----SIIPLPNA---QTMLTF 542
             N  +                 +    L L ++S L +    S + LP       M++ 
Sbjct: 227 KGNPLNTEKAPWTKALESGQVIMNQVVRLTLPNESRLTFMVNCSPVLLPGGKVGGVMVSL 286

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT     E  L    E    A+  K+ F+ ++S+E+R+P+  I+GF D+L+  K   L
Sbjct: 287 DDVTLLEEKELELRRSKEEAEAANRAKSDFLANMSHEIRTPMNAILGFADILRRDK-KKL 345

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + Q +++  IS S   LL+L+NDILDL+ V++G +++         L++ V Q +  K 
Sbjct: 346 QTDQLKHINTISTSGQHLLDLINDILDLSKVESGRLEVEALDCKPVQLIHHVLQFMKVKA 405

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN-GDF 719
            E  + +K ++D  L      D  R+ QI + ++ NA+ F+ +G  TV +    DN    
Sbjct: 406 DEKGLELKFVADTSLPEQIETDPGRVRQILTNLIGNAIKFTEQGGVTVHVSVVGDNPKQM 465

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             +V + G  + +    SVF  FV       RR  G GLGLSI + F +  GG + ++S 
Sbjct: 466 KIAVVDTGIGMTQQQTDSVFEAFVQADSSITRRFGGTGLGLSISQKFAHALGGDILVTSE 525

Query: 778 DEGVTTINCRI 788
               TT    +
Sbjct: 526 KGVGTTFTLVL 536



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 20/156 (12%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA-FLATNPSNDELLEFLRSANKL 365
                L  +   + + D+N+ +   N+SF ++ E      +    S              
Sbjct: 174 RVRSALDTMAEGLLVLDKNQNVVLANQSFSDMVERSAEKMIGVKASVFPW----HDRKGN 229

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFEN 418
           P       W        +          LPN   L  +V  +P        GG +   ++
Sbjct: 230 PLNTEKAPW-TKALESGQVIMNQVVRLTLPNESRLTFMVNCSPVLLPGGKVGGVMVSLDD 288

Query: 419 LT-------VQVDLETKYNTLVKVQGETIDHLSEGV 447
           +T            + +     + + + + ++S  +
Sbjct: 289 VTLLEEKELELRRSKEEAEAANRAKSDFLANMSHEI 324


>gi|120602614|ref|YP_967014.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562843|gb|ABM28587.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1039

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 101/514 (19%), Positives = 184/514 (35%), Gaps = 42/514 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                +    T    +     + +  +D +  +   N  F EL       +         
Sbjct: 391 EARTEIKRSETRYRLVFDQSPLGLVQYDGDGIIIDVNERFAELCGASRDQIIG----FNY 446

Query: 356 LEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIVTSNPRGGT 412
           +  +  A  L   L + +        VY S    K      L  G    V   +      
Sbjct: 447 INQMHDARMLGAVLASLRGGIGGFEGVYTSPLGKKTAFIRCLFKG----VKAPAGDVFIG 502

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + E+++ +   E           ET      G             +     +    E+
Sbjct: 503 IGIIEDVSDRKQAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSEEVNRILDLPED 562

Query: 473 R---------LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
                          ++  I A      +     D+    +T     + +    +  + +
Sbjct: 563 YKPGLAEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLRAVGRVDE 622

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                       A  + TF +V +  R E  L E       A+  K+ F+ ++S+E+R+P
Sbjct: 623 G---------SGALVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTP 673

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I G   +L      SL  +Q +  E    S   L +L+ D+LD++ +DAG +++   
Sbjct: 674 LNGIFGMLRMLAD---ASLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSI 730

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
              L+  + +V++       +  + + V  D  + S  V D  RL Q+ + +L NA  F+
Sbjct: 731 PFDLSRSIRQVRELFIPSAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFT 790

Query: 703 SKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGV 754
            KGS V L+A        ++   +FSV++ G  IP++    +F  F       +   +G 
Sbjct: 791 EKGS-VTLRAEHLSPVLANSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGA 849

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGLSI    I + GGH++  S     TT+   +
Sbjct: 850 GLGLSICRRIIRVMGGHLAFESEAGTGTTVYFTL 883


>gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 789

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 157/391 (40%), Gaps = 23/391 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +  +   E             ++++ + V V      R    N A   +       L   
Sbjct: 157 IAERQRAEDAVRDSETFLNSIVENIPDMVFVKEAATLRYVRFNKAAEQVLGYRREELLGR 216

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +      A  + ++   D   L +  +    +E    +  L LL    +  + +      
Sbjct: 217 SDQDLFPAEEAEFFVHKDRAVLESRQMIDVPEEPVHTRHGLRLLHTMKIPIADVRGVPQF 276

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSFVQHVSYE 579
            +    ++T+   AE  L    E L                     ++ K+ F+ H+S+E
Sbjct: 277 LLGISRDITEHKLAEAELRRYREHLEDMIRERTAELAVAKEHADAANQAKSDFLAHMSHE 336

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  I+G+  +LK     +L+ +Q   +  I  S   LL L+NDILD+A ++AG M+
Sbjct: 337 LRTPLNAILGYAQILKLD--TTLDQRQINGLTVIQRSGEHLLMLINDILDIAKIEAGRME 394

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
           LN S + L  L++ + +SI  K  E  +         L +    D  RL Q    +LSNA
Sbjct: 395 LNLSDVSLEQLVHFIAESIRVKATEKGLAFACEMPPDLPAGVRVDEIRLRQALLNLLSNA 454

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLG 757
           + F+ +GS  +  A        F V++ G  I E   + +F  F   +    R  G GLG
Sbjct: 455 IRFTEQGSVRLSVAFTPPTRLCFEVQDTGIGIDEGRLEEIFRPFEQVSDERHRFGGTGLG 514

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I    + L GG + + S  +  +T +  +
Sbjct: 515 LAISRQLVRLMGGEIHVESRRDIGSTFSIVL 545



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 74/206 (35%), Gaps = 23/206 (11%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
              + +  E  R+  Q+ D + E       ++  R +         +L G  +E+AE   
Sbjct: 108 ARAVEQFLEDRRQRRQAEDALKELNVGLEARVAQRTAELS-----KALAGQAAEIAERQR 162

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA--NISYKKNTETEGIVFQKAIGES- 240
               + +  +    + +++  +V+ ++ A  + +   N + ++     G   ++ +G S 
Sbjct: 163 AEDAVRDSETFLNSIVENIPDMVFVKEAA-TLRYVRFNKAAEQ---VLGYRREELLGRSD 218

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNNKSY----KIVRVLN-SFGEA 289
           + LF  E  +  +          + +   E      HG    +     I  V        
Sbjct: 219 QDLFPAEEAEFFVHKDRAVLESRQMIDVPEEPVHTRHGLRLLHTMKIPIADVRGVPQFLL 278

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNL 315
           GI+ D+++      +L    E L ++
Sbjct: 279 GISRDITEHKLAEAELRRYREHLEDM 304


>gi|163733036|ref|ZP_02140480.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis
           Och 149]
 gi|161393571|gb|EDQ17896.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis
           Och 149]
          Length = 752

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 175/373 (46%), Gaps = 15/373 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +   + +   ++I+ +++G A + PD  + ++N ++ +++   E+ + PG     +   
Sbjct: 72  KQIERVERRLWQSIETINDGFAFYSPDLELIMANNSYLAVFDGLED-MQPGVSYVTVLQF 130

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSIIPLPNAQTMLTFV 543
            +     + G    A       +  +S +     ++L ++  +       P+   +   +
Sbjct: 131 LTEEGIVNIGDMQPAEWRQKMIERVQSAEPEAVIIKLWNNEYIRMIDRRGPDGDIISLGI 190

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T +V+ E  L     +   A   K++F+ ++S+E+R+P+  ++G  D+L  +    L+
Sbjct: 191 NITAAVQYEEQLKAARASAEAASRAKSAFLANMSHEIRTPMNGVVGMADVLTET---PLS 247

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YV+ I  S   LL ++ND+LD + ++A  ++L+     L   ++EV + + +   
Sbjct: 248 EEQRLYVDTIKNSGEALLVIINDVLDYSKIEAEKLQLHPEPFNLEKSIHEVLRLLQSIAR 307

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--- 718
           +  I + V     L S F+ D  RL QI + +L NA+ F+++GS TV +    D      
Sbjct: 308 DKGILLCVDYSLLLTSDFIGDPGRLRQILTNLLGNAVKFTTEGSVTVRVSGKPDEATGKV 367

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                V++ G  IPEDM   VF  F        R+  G GLGL+I +  I +  G + ++
Sbjct: 368 IVQVRVEDTGIGIPEDMIDHVFGEFNQVESERNRQFDGTGLGLAITKQLIKMMDGQIWLT 427

Query: 776 SSDEGVTTINCRI 788
           S +   +     I
Sbjct: 428 SEEGVGSCFGFEI 440



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 51/135 (37%), Gaps = 2/135 (1%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    +       ++ +  +    A +  +  L   N S++ +++  L  +    S   +
Sbjct: 69  AAHKQIERVERRLWQSIETINDGFAFYSPDLELIMANNSYLAVFD-GLEDMQPGVSYVTV 127

Query: 356 LEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L+FL     +    +    W++ +    +S+E       L N + + +I    P G  I 
Sbjct: 128 LQFLTEEGIVNIGDMQPAEWRQKMIERVQSAEPEAVIIKLWNNEYIRMIDRRGPDGDIIS 187

Query: 415 MFENLTVQVDLETKY 429
           +  N+T  V  E + 
Sbjct: 188 LGINITAAVQYEEQL 202


>gi|153938174|ref|YP_001389703.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|170754692|ref|YP_001779988.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152934070|gb|ABS39568.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|169119904|gb|ACA43740.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|295317791|gb|ADF98168.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 615

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 77/393 (19%), Positives = 168/393 (42%), Gaps = 20/393 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + +  N   Q +++ +    + ++ E      I +  + + V    G+I  +N   + + 
Sbjct: 198 VNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILV-HRYGKIIFANERLKQML 256

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             ++        I+++       + +    +L+    +  +D  K     +     ++  
Sbjct: 257 GYKKEYNFEDIDIKSLIPEDQYNFVKDQLKNLY----SGSEDIVKFQHNVINNKGKTIQN 312

Query: 528 YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYE 579
            S   + +        +    +     + E+ + +  E L +    +++   F+ ++S+E
Sbjct: 313 TSTYVIYDGIPTIFSILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHE 372

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++PL  I     LL   +    + KQ +Y++ I  +   L+ L+N++LD   +D+G +K
Sbjct: 373 LKTPLNVIFTAVQLLGFYEEDCNDEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLK 432

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           LN     + +L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSNA+
Sbjct: 433 LNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNAI 492

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
            F++ G  + +       +    VK+ G  IP D  +S+F RF          + G G+G
Sbjct: 493 KFTNPGGNIFVNVKDSGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIG 552

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L +V+SF+ +H G V I S     T    ++PS
Sbjct: 553 LHLVKSFVEMHKGTVHIKSELGQGTEFIIKLPS 585


>gi|170746662|ref|YP_001752922.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653184|gb|ACB22239.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 974

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 125/661 (18%), Positives = 232/661 (35%), Gaps = 90/661 (13%)

Query: 210 DQAGDILWANISYKKNTE---------------TEGIVFQKAIGESRKLFKEEIKKRMIS 254
           D    ++  N  ++                      +     +  +    +  + +R+  
Sbjct: 52  DSDDRLVLCNGHFQDLHPGLSTIIVPGVAFEAIARAVAETCVVRPNGMTVEGWLAERIAH 111

Query: 255 SSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
             A      +        + +  ++  R  N  G   +  DV++       L  T   L 
Sbjct: 112 YRAPGGPLLQQRV-----DGRWVQVNERKTNDGGVVAVYTDVTEIKRAEQVLQATQGRLT 166

Query: 314 NL----TVAIAIFDQNRY--LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
            L       I  F+        F + +  +L   +       P     LE L   ++   
Sbjct: 167 YLLTASPSMICSFEVGGRNAPTFISENVRDLLGYEPGDYLAGPEF--WLERLHPDDRDRV 224

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG----TIWMFENLTVQ- 422
              +     +  +V +    H +  +        ++      GG     +  + ++T + 
Sbjct: 225 LAEFPRLLADGHNVIEYRFQHANGTYRWVRDEQRLLR---DLGGQPVEVVESWSDITERK 281

Query: 423 -----VDLETKYNTLVKVQGETIDHLS----------EGVA-----------VFGPDGR- 455
                +  +T +  L++      +             E VA           +   DG  
Sbjct: 282 EAELALQKQTAFVELLQAAAAAANEAPTVEDALRFCLERVAQHAGWPVGHAHILARDGTR 341

Query: 456 ------IKLSNP-----AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
                 I   +P      F++           G   R + +    +              
Sbjct: 342 TLLPTGIWHCDPGADVARFQAATAATSLAAGSGLAGRVLVSGAPEWSVGDPTLAADPRAP 401

Query: 505 TSFDDERKSLQG---TLELLSDSVLEYSIIPL--PNAQTMLTFVNV-------TDSVRAE 552
            + +   ++  G   T+     +VLE+       P+A  +    N+        +  +AE
Sbjct: 402 AAVEHGIRAGFGFPVTVGRDVVAVLEFFARDASPPDASLLRVMSNIGAQLGRVIERKQAE 461

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L +  EA  +A   K+SF+ ++S+ELR+PL  IIGFT L+       L  KQ + +E 
Sbjct: 462 ESLRQAKEAAEEASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKDVLPVKQFENLEK 521

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I ASS  LL+L+N ILDLA V+AG M++  S   L  +L+   +++   +    +R+   
Sbjct: 522 ILASSEHLLSLINSILDLAKVEAGRMEVKPSDFALEPVLDLCLRTVEPLVKNEGVRLVRD 581

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                     D ++L QI   +LSNA+ F+  GS V L+    +    F+V + G  IP 
Sbjct: 582 VRDPPPMLRTDEEKLRQILINLLSNAIKFTEAGS-VTLRVRSVDEGIEFAVMDTGIGIPA 640

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               ++F  F    +       G GLGL+I      L GG + + S +   +T    IP 
Sbjct: 641 GALSAIFEEFHQVDNSATRSHSGTGLGLAISHRLARLLGGRIDVESREGEGSTFTLTIPP 700

Query: 791 K 791
           +
Sbjct: 701 R 701



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 79/263 (30%), Gaps = 5/263 (1%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V        E +   +   A+FD +  L   N  F +L       +    + + +   +
Sbjct: 29  EVGVAKQKLIEAIECSSEGFALFDSDDRLVLCNGHFQDLHPGLSTIIVPGVAFEAIARAV 88

Query: 360 RSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
                  P  +  + W     + Y++           +G+ + V       GG + ++ +
Sbjct: 89  AETCVVRPNGMTVEGWLAERIAHYRAPGGPLLQ-QRVDGRWVQVNERKTNDGGVVAVYTD 147

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR--IKLSNPAFRSLWKTEE-NRLS 475
           +T     E             +      +  F   GR      +   R L   E  + L+
Sbjct: 148 VTEIKRAEQVLQATQGRLTYLLTASPSMICSFEVGGRNAPTFISENVRDLLGYEPGDYLA 207

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                        R    ++   L A      +   +   GT   + D       +    
Sbjct: 208 GPEFWLERLHPDDRDRVLAEFPRLLADGHNVIEYRFQHANGTYRWVRDEQRLLRDLGGQP 267

Query: 536 AQTMLTFVNVTDSVRAERALTEK 558
            + + ++ ++T+   AE AL ++
Sbjct: 268 VEVVESWSDITERKEAELALQKQ 290


>gi|114562197|ref|YP_749710.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333490|gb|ABI70872.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 869

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 115/671 (17%), Positives = 244/671 (36%), Gaps = 62/671 (9%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGI 231
           E+ E     + L N  ++ + +F+S +F     D  G I   N+  ++       E    
Sbjct: 39  EVTERRHAEEALLNAGALQRAIFNSANFSCIATDAKGVIQIFNVGAERMLGYSAIEVVDN 98

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF----- 286
           +    I + +++        +  S+ +E  F   V     G    Y++  +         
Sbjct: 99  ITPAEISDPQEIIARAEALSVELSTPIEPGFDALVFKATRGIEDIYELTYIRKDGSRFPA 158

Query: 287 ---------------GEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRY 327
                          G   I  D S      + L         I ++   +    D +  
Sbjct: 159 VVSVTALRDDQGIIIGYLLIGTDNSVGKQAEEALLKAGALQKAIFNSANFSSIATDAHGV 218

Query: 328 LQFHNRSFVELWEIDLAFLATNPSND------ELLEFLRSANKLPEQLNWKTWKENIFSV 381
           +Q  N     +       +    +        E++E  +  +   +      +   +F  
Sbjct: 219 IQIFNVGAERMLGYTADEVMNKITPADISDPKEVIERAKELSIELDTAITPGFDALVFKA 278

Query: 382 YKSSE-THKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLV 433
            +  E  ++ T+   +G     +V+            G + +  + T +  +E +   L 
Sbjct: 279 RRGIEDIYELTYIRKDGSRFPAVVSVTALRDEHKAIIGYLLIGTDNTARKRIEEEQKELG 338

Query: 434 KVQGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +   +        I+   + +    P G I   N     L     + L  GT  ++   T
Sbjct: 339 RRLQDQHFYTRNLIESNIDALTTTDPSGIITDVNKQMEELTGNNRDSL-IGTPFKDYF-T 396

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
              +        L   II+ ++   ++  G   ++S +   +               +VT
Sbjct: 397 DPEFAAAGIKRVLSEKIISDYELTARTKNGKETVVSINATTFYHRDNKLQGIFYGARDVT 456

Query: 547 DSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  R  +        L        KA+  K+ F+  +S+ELR+PL  I+GF  L+++S  
Sbjct: 457 ERNRLNQKLLEKNIELENAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLMESSTP 516

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               + Q + +  I  +   LL L+N+ILDLA +++G + ++   + L++++ E      
Sbjct: 517 APPPA-QKRSIAQILKAGWYLLELINEILDLALIESGKLPMSLEAVSLSEVMQECVLMSE 575

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGD 718
            +   ++I++             DR RL Q+   +LSNA+ ++ KG +VIL+ ++  +  
Sbjct: 576 PQAQLHDIKVVFTRSTTKDFLNVDRTRLKQVIINLLSNAIKYNRKGGSVILEHSQSSDDM 635

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             FSV++ G  +  +    +F  F         + G G+GL + +  +   GG + + S+
Sbjct: 636 MRFSVRDTGEGLSAEQLGQLFQPFNRLGQEANNQEGTGIGLVVSKRLVESMGGVIGVQST 695

Query: 778 DEGVTTINCRI 788
               +     +
Sbjct: 696 VGVGSVFWFEL 706


>gi|309790646|ref|ZP_07685199.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227312|gb|EFO80987.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 717

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 169/380 (44%), Gaps = 33/380 (8%)

Query: 428 KYNTLVKV---QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RN 482
           +Y   ++     G+   +L  G+A+   +G++  SNPA+   W           H+    
Sbjct: 347 RYQEAIENALYLGQVFSNLPTGLALLDINGKVLRSNPAWDLHWGLHGVARHETFHVTLDL 406

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           I     R  +       F  +  +  ++  +    +    D  LE   +P  +++  +T 
Sbjct: 407 IEHLLPRLQDPHKLTTFFEQMQRTPGNDLLTTVHLMNPRQD--LELRSVPTRDSKDRITG 464

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                S               +AD +KN FV  VS+ELR+PLT+I+G+T+LL+T +    
Sbjct: 465 RLWAVSDVTRER---------EADRLKNEFVSIVSHELRTPLTSILGYTELLRTREFAP- 514

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++ Q++  +   +  L  LV D+L ++ ++AG +KLN   I L +++ E+   + T +
Sbjct: 515 -EERQQFITTVFNEAERLSQLVEDLLGMSRIEAGKVKLNRWVISLTNIVYELTTQLNTSL 573

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------- 715
            ++  R+ +   G++    ADR ++ QI   +L+NA+ +S  G  + L            
Sbjct: 574 IKH--RLLIDITGEIPPIYADRDKVKQIIFNLLTNAIKYSPNGGEIQLTIREAQKRDLPG 631

Query: 716 ----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                   + SV++ G  +  +    ++ RF    +   R   G GLGLSI  + + LHG
Sbjct: 632 DHPLGQWIVVSVRDEGIGMAPEDLPRIWERFYRVDNTNTRKIGGTGLGLSISRALVELHG 691

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + ++S+    +     +P
Sbjct: 692 GRIWVTSTLGRGSRFFFTLP 711


>gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus
            degradans 2-40]
 gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
            2-40]
          Length = 1653

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 139/825 (16%), Positives = 289/825 (35%), Gaps = 101/825 (12%)

Query: 57   ETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQ--LHQRIDIPQTDTDLLS 114
               + L+   ++  +   ++   +    +WD    T EI+      + I     D + +S
Sbjct: 412  RKQAELALAQNR-KQLEQIIDSTS--VAIWDWNIVTGEIVINERWAEIIGYSLMDLEPVS 468

Query: 115  FENWLKFHHYIKLSKATEKLRKE--GQS----FDLVAETQNDCAIKI--EGRVSGSCAFL 166
             + W  F H   L K++E L     G+S     +     ++   + +   G+V    +  
Sbjct: 469  IDTWTNFTHPEDLDKSSELLNAHWNGESNHYQCEARMHHKDGHWVWVLDSGKVIEWTSEG 528

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            + L + G + ++ E     + +       K  FD     +   D+ G     N ++    
Sbjct: 529  KPLRMVGTHLDITEQKESQRLIEQSQIELKNFFDLSPNFMCIIDREGFFERINDTFLSQL 588

Query: 227  ETEGIVF-----QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
            +     F        +    +   ++  ++M S +  +      + +        +    
Sbjct: 589  DFTRDDFFSCKYIDFVHPDDREITQDHFEKMKSGALTQVFTNRYMHSNGDYLYLQWYTFA 648

Query: 282  VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI----FDQNRYLQFHNRSFVE 337
               S      A+D++ +     ++    E+L +++    I     +      + +    +
Sbjct: 649  DPASGMVYTTALDITNQKLDEKRMARQQEMLLSMSEQGRIGAWEVNLEEQQMYWSTMTKD 708

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            + E+D  +     S  +  +   S + +   LN    K    S+     T K        
Sbjct: 709  IHEVDANYTPHYESAIDFYKEGESRDTISRLLNLAINKGIPASIELPIITAKHN-ERWVS 767

Query: 398  QTLHVIVTSNPRGGTIWMFENLTVQVDLET--------------KYNTLVKVQGETIDHL 443
             T+     +          +++  +  +E                 N +   Q   I   
Sbjct: 768  VTVQPEFRNKQCIRLFGSIQDIDARKRIEQGVQLANTKLEKQMTLVNAIAAAQASFIQQT 827

Query: 444  SEGVAVFGP-DGRIKLS----------------------------------NPAFRSLWK 468
               +A     DG ++L+                                  N  F +  +
Sbjct: 828  DIAIAFRNLLDGVLELAESEYGFVSEILYTEKNEPYIRTHAIANRSTHDRYNAFFAAQGE 887

Query: 469  TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                  +  + +     +C      S   D   A +     + +S  G   +L+ S++  
Sbjct: 888  NPIEFFNLDSLLGAAVTSCKPVIANSPTTDSRRAGVPDGHPQLESYLGIPIILNGSIIGL 947

Query: 529  ----------------SIIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                             + PL N   Q +     + +   A++AL +   A   A   K+
Sbjct: 948  IGLANNPNGYNQALVDWLAPLINTVGQMIENTRAIRERDNAQQALVKAKNAAELAARTKS 1007

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+  +S+E+R+PL  ++G  +L+K ++   L  KQ   ++   +S+  LLNL+NDILD 
Sbjct: 1008 EFLAMMSHEIRTPLNGVLGMLNLVKRTQ---LEDKQRYQIDIAKSSAESLLNLINDILDF 1064

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQ 689
            + VDAG + L      +  LL ++  ++A +  E    + + +   +      D  RL Q
Sbjct: 1065 SKVDAGKLDLEVVDFNIITLLEDIAHAMAGRALERGNELIIDTTKLEFTYLSGDPSRLRQ 1124

Query: 690  IFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            I   ++ NA+ F+  G  V + A+        +   SV + G  I E+    +F+ F   
Sbjct: 1125 ILVNLIGNAIKFTQNGE-VTVTASLTKNTSGFNLNISVADTGIGIAEEKIPLLFSAFTQV 1183

Query: 746  AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 R   G GLGL+I +    L GG ++I+S +   +  + +I
Sbjct: 1184 DASTTRKYGGTGLGLAICKKLCALMGGDINITSQEGNGSEFSFQI 1228



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 53/396 (13%), Positives = 115/396 (29%), Gaps = 32/396 (8%)

Query: 195 FKVLFDSLDF-LVWHRDQAGDILWANISYKKNT-----ETEGIVFQKAIGESRKLFKEEI 248
           F+ LF+     +  +R   G  +  N + +        E  G  + +      +  ++ +
Sbjct: 300 FRGLFELSPVGIALNRFTDGKYVETNTALENMLGYSADELHGKTYLEITSPVYEDHQKAV 359

Query: 249 KKRM---ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
              +         EK F     TL         +           I  D++        L
Sbjct: 360 INSLKNYGRYGPYEKEFIRRDGTLLPVIMNGMLVTDSNGEKLIWSIVEDITSRKQAELAL 419

Query: 306 THTYEILHNL--TVAIAIFDQN--RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
               + L  +  + ++AI+D N        N  + E+  I  + +   P + +       
Sbjct: 420 AQNRKQLEQIIDSTSVAIWDWNIVTGEIVINERWAEI--IGYSLMDLEPVSIDTWTNFTH 477

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTS-----NPRG---GT 412
               PE L+  +   N     +S+    +   H  +G  + V+ +         G     
Sbjct: 478 ----PEDLDKSSELLNAHWNGESNHYQCEARMHHKDGHWVWVLDSGKVIEWTSEGKPLRM 533

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    ++T Q + +              D     + +   +G  +  N  F S      +
Sbjct: 534 VGTHLDITEQKESQRLIEQSQIELKNFFDLSPNFMCIIDREGFFERINDTFLSQLDFTRD 593

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                 +I  +         +        A+   F +      G    L      Y+   
Sbjct: 594 DFFSCKYIDFVHPDDREITQDHFEKMKSGALTQVFTNRYMHSNGDYLYLQW----YTFAD 649

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             +     T +++T+    E+ +  + E L    E 
Sbjct: 650 PASGMVYTTALDITNQKLDEKRMARQQEMLLSMSEQ 685



 Score = 44.5 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 98/314 (31%), Gaps = 46/314 (14%)

Query: 316 TVAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            V IA+  F  +      N +   +       L      +            P   + + 
Sbjct: 308 PVGIALNRF-TDGKYVETNTALENMLGYSADELHGKTYLEI---------TSPVYEDHQK 357

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVT------SNPRGGTIWMFENLTVQVDLET 427
              N    Y     ++  +   +G  L VI+       SN       + E++T +   E 
Sbjct: 358 AVINSLKNYGRYGPYEKEFIRRDGTLLPVIMNGMLVTDSNGEKLIWSIVEDITSRKQAEL 417

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKT-----------EENRLS 475
                 K   + ID  S  +  +    G I + N  +  +                   +
Sbjct: 418 ALAQNRKQLEQIIDSTSVAIWDWNIVTGEIVI-NERWAEIIGYSLMDLEPVSIDTWTNFT 476

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               +   +   + ++N         A +   D     +     L S  V+E++    P 
Sbjct: 477 HPEDLDKSSELLNAHWNGESNHYQCEARMHHKDGHWVWV-----LDSGKVIEWTSEGKP- 530

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            + + T +++T+   ++R + +    L+   ++  +F+  +  E         GF + + 
Sbjct: 531 LRMVGTHLDITEQKESQRLIEQSQIELKNFFDLSPNFMCIIDRE---------GFFERIN 581

Query: 596 TSKLGSLNSKQSQY 609
            + L  L+  +  +
Sbjct: 582 DTFLSQLDFTRDDF 595


>gi|94270344|ref|ZP_01291716.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450841|gb|EAT01870.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 12/262 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M    +      A     E     + A+  K+ F+ ++S+E+R+P+  +IG   LL    
Sbjct: 141 MELMESNRRLGEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAE- 199

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q  Y + I +S   LL L+N ILD + ++AG ++L+       +L+ EV   +
Sbjct: 200 --DLSDEQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLL 257

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST------VILK 711
             +    NI +       + + V  D  RL Q+   ++ NA+ F+  G            
Sbjct: 258 QPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELSPAPAD 317

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            A  +    F+VK++G  IP +    +F RF         +  G GLGL+I    + L G
Sbjct: 318 PAAPHCSLHFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMG 377

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + + S +   +T    +P +
Sbjct: 378 GEIGVESEEGKGSTFWFTVPLR 399


>gi|313618121|gb|EFR90221.1| sensor histidine kinase ResE [Listeria innocua FSL S4-378]
          Length = 596

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 170/400 (42%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNISALRQEKEQLSNILVGMADGVIKFSVDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I    +   N++              D+++S  G +
Sbjct: 281 SNPPAEEFLHNWFFSPENTEKVL-IPTALNDLLNDTL-------------DKKESQVGEI 326

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              SD      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 327 -TFSDRTYVAILTLLYTGEHVRSIVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 435 QMDNQKLPLAPLLRKVIANFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNA 494

Query: 699 MDFS-SKG--STVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  +  +G    VILK   D    + + +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYAGKVILKQTIDETRNNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 555 AVGTGIGLAIVKNIVEAHNGKISVESVLGKGSDFIITLPL 594


>gi|320156917|ref|YP_004189296.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319932229|gb|ADV87093.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 716

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 91/415 (21%), Positives = 168/415 (40%), Gaps = 28/415 (6%)

Query: 398 QTLHVIVTSNPRGGT-IWMFENL--TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
               +  +   +GG  +W+ E +      D  T+    ++         + G+  F P  
Sbjct: 76  THWTLSASPRTQGGFDLWLQEAVCDDALRDENTRLRRDIERLDFAAQGANLGIWDFNPST 135

Query: 455 RIKLSNPAFRSLWKTEENRLSPGT----HIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              + N  +    K E N L         I N     S   +  D  +    I    D E
Sbjct: 136 GCIIGNKTWAIQKKLEPNHLFADDALFSEIINGIEKWSEIVHPDDVAETTDKIQAHLDGE 195

Query: 511 RKSLQGTLELLSD-----------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            +       +               V E     +P  +     V++    R +++L+E  
Sbjct: 196 TELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVP-VRMNGIHVDIDKLKRLQQSLSETK 254

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +    A+  K+ F+ ++S+ELR+PL  ++G+T L+K  +   L +K  +Y++ I+ S   
Sbjct: 255 DKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQR--LTAKHHEYLDIINRSGEH 312

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+ND+LD++ +DAG   +        ++  E+   +  K  +  + +    +  +  
Sbjct: 313 LLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPH 372

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPED 733
           FV  D  +  Q+   +L NA+ F+ +G  V L  A +          F V + G  I E+
Sbjct: 373 FVLGDVVKTRQVLINLLGNAIKFTYRG-NVRLNIASEALQNGQHKVTFEVSDTGIGISEE 431

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + VF  F        + G GLGLSI + F+ L GG + + S     +T +  +
Sbjct: 432 NQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKSELHRGSTFSFSL 486


>gi|17231988|ref|NP_488536.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
 gi|1546076|gb|AAC32398.1| HepK [Nostoc sp. PCC 7120]
 gi|17133632|dbj|BAB76195.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
          Length = 575

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 126/252 (50%), Gaps = 13/252 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVE 611
           + L +  E    A + K+ F+ +VS+ELR+PL  +IG + LLK      +L+ + +  +E
Sbjct: 323 KELEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDDAADLNLSGEFTSDLE 382

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+++   LL L+NDILDL+ ++AG M L      +  L+N V  ++   + +NN  +++
Sbjct: 383 TINSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVVTVKPTIEKNNNLLEI 442

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---------FS 722
             D  LG+  AD+ R+ Q+   +LSNA  F++ G  + L   R+  DF+         F+
Sbjct: 443 YCDEHLGTMYADQTRMRQVLLNLLSNAAKFTTNG-RIKLTVRREKEDFLPEMPFGAISFT 501

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  +     + +F  F            G GLGL+I   F  + GG + + S    
Sbjct: 502 VSDTGIGMSPSQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEIIVKSQLGL 561

Query: 781 VTTINCRIPSKE 792
            +T    +P +E
Sbjct: 562 GSTFTVYLPLQE 573


>gi|303247150|ref|ZP_07333425.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491576|gb|EFL51461.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 801

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 106/636 (16%), Positives = 231/636 (36%), Gaps = 96/636 (15%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +Y +    +   F++A+ +  ++     ++R          F E +S +   N+      
Sbjct: 154 AYAREIGADEDAFRRALEKVPRM----SRERFGKVCTALYCFAEHLSAMALRNH------ 203

Query: 281 RVLNSFGEAGIAIDV--SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
                  +  + ID     +  +  +  +  +++  L     + +    + F N++  +L
Sbjct: 204 -------QQSLLIDDLRQAQAELKTRDRNLADLIDFLPDPTMVVNAQGSVVFWNKAMEKL 256

Query: 339 WEIDLAFLATNPSND-----------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
             I    +      +            L+++ R A   P+   +    +N+ S+      
Sbjct: 257 TGIAAVDMLGKSRFEYGEPFYGAPTPLLIDYARGAVGQPDAR-YVVADKNVDSIIAEVSV 315

Query: 388 HKDTWHLPNG-QTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
                 LP G + +     +         G I +  ++T     +       +     ++
Sbjct: 316 A----TLPRGPRHIWAKAVALRDDTGRITGGIEVIRDITDNQRADLALRESEEKFRRIVE 371

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
             +EGV V     +    N    ++       + PG+ +       S     +    L  
Sbjct: 372 TANEGVWVLDAADKTAFVNRRMAAMLGCSAEEM-PGSLVEPFLTEKSLPTVRAHLDKLRQ 430

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALT 556
              T F+ E +++ G +       +  S  PL +        +  F ++T   + E  L 
Sbjct: 431 GQTTVFEHELRAVTGAV-----LWVMVSASPLYDGSGRYIGALGMFTDITARKKIEEELA 485

Query: 557 EK-------------------------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           E                          N  L + D +K++F+  VS+ELR+PLT+I+GF 
Sbjct: 486 ESSHRLEAEVEERTRDLRLQALELAEANIRLSELDRLKSAFLSTVSHELRTPLTSILGFA 545

Query: 592 DLL----------KTSKLGSLNSKQSQY---VEYISASSTILLNLVNDILDLATVDAGIM 638
            L+            + + +L +K  +    +  +   +  L  L+ND+LDL  +++G M
Sbjct: 546 KLIGRDFNDQFLPLATGVPALEAKGRRIASNLAVVYGEAERLTRLINDVLDLNRIESGNM 605

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
               +     ++L +   SI   + +   I   +  +  +     D  +L+Q+ + +L N
Sbjct: 606 HWRDTRFNPLEVLGKAANSIKGLLSQRPEITFVLEMNEDVPEVRMDPDQLIQVVTNLLQN 665

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ----RRG 753
           A+ F+ +G TV +   R+      ++ ++G  IP    +++F +F             +G
Sbjct: 666 AVKFTREG-TVRMTVRREGEAVELAIADSGIGIPPGELEAIFGKFHQVGRSDTMGETTKG 724

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I    +  +GG +   S     +     +P
Sbjct: 725 TGLGLAICRQIVRHYGGRIWAESQLGQGSVFYVLLP 760



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 93/305 (30%), Gaps = 51/305 (16%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +D +    AE   + + L++       L D L       +  G +++ N + +K T    
Sbjct: 209 IDDLRQAQAELKTRDRNLAD-------LIDFLPDPTMVVNAQGSVVFWNKAMEKLTGIAA 261

Query: 231 IV---------FQKAIGESRKLFKEEIKKRMISSSALEKNFCE---------TVSTLEHG 272
           +           +   G    L  +  +  +    A      +         +V+TL  G
Sbjct: 262 VDMLGKSRFEYGEPFYGAPTPLLIDYARGAVGQPDARYVVADKNVDSIIAEVSVATLPRG 321

Query: 273 NNKSYKIVRVLNSF-----GEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFD 323
               +     L        G   +  D++     ++ + +       I+      + + D
Sbjct: 322 PRHIWAKAVALRDDTGRITGGIEVIRDITDNQRADLALRESEEKFRRIVETANEGVWVLD 381

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
                 F NR    +       +        +  FL   +    + +    ++   +V++
Sbjct: 382 AADKTAFVNRRMAAMLGCSAEEMPG----SLVEPFLTEKSLPTVRAHLDKLRQGQTTVFE 437

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQ 436
                        G  L V+V+++P         G + MF ++T +  +E +        
Sbjct: 438 ------HELRAVTGAVLWVMVSASPLYDGSGRYIGALGMFTDITARKKIEEELAESSHRL 491

Query: 437 GETID 441
              ++
Sbjct: 492 EAEVE 496



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 69/209 (33%), Gaps = 31/209 (14%)

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
            GR++G    +R ++ D   ++LA        L      F+ + ++ +  VW  D A   
Sbjct: 336 TGRITGGIEVIRDIT-DNQRADLA--------LRESEEKFRRIVETANEGVWVLDAADKT 386

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLE 270
            + N   ++     G   ++  G   + F  E     ++  +      +    E      
Sbjct: 387 AFVN---RRMAAMLGCSAEEMPGSLVEPFLTEKSLPTVRAHLDKLRQGQTTVFEHELRAV 443

Query: 271 HGNNKSYKIVRVLNSFGE------AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
            G      +       G        G+  D++    + ++L  +   L      +    +
Sbjct: 444 TGAVLWVMVSASPLYDGSGRYIGALGMFTDITARKKIEEELAESSHRLE---AEVEERTR 500

Query: 325 NRYLQF-----HNRSFVELWEIDLAFLAT 348
           +  LQ       N    EL  +  AFL+T
Sbjct: 501 DLRLQALELAEANIRLSELDRLKSAFLST 529


>gi|21233072|ref|NP_638989.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770012|ref|YP_244774.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21114924|gb|AAM42913.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575344|gb|AAY50754.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 630

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 165/399 (41%), Gaps = 28/399 (7%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +F ++T +  +E +            D L   V V    G ++  N A+   +  + 
Sbjct: 87  VAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDI 146

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEY 528
           +  +         +  S   +  D       +  S +++R           D     +E 
Sbjct: 147 SSGT--------VSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRHDGQWRWIEM 198

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADE-----------IKNSFVQHV 576
           +  P  +A      +  +     E R +    E L +++            +K+ F+  +
Sbjct: 199 TATPRYSADGRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMARLKDEFLATL 258

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT I+G+++LL         +   + +  I++S+     L++D+LDL+++  G
Sbjct: 259 SHELRTPLTTILGWSELLLQRVEEGHPN--YKGLSVIASSARAQKRLISDMLDLSSMLLG 316

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L   ++ L + + E   +        +  +++         + D  RL Q+F  +LS
Sbjct: 317 KVQLEVESLDLAEQVREALGAQEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLS 376

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ F+     + +    D+G FI SV+++G  I  +    +F RF        R   G+
Sbjct: 377 NAIKFTPAHGRIDVTVEHDDGHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGL 436

Query: 755 GLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
           GLGL+IV+  + +HGG V  +S       T   R+P  +
Sbjct: 437 GLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLPEHQ 475



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+   + F  L D L   VW  D  G + + N +Y +      ++ T  
Sbjct: 93  DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDISSGTVS 152

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
              +    E   +F+ E+   +     L             G  +  ++           
Sbjct: 153 AWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRH---DGQWRWIEMTATPRYSADGR 209

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G AG + DV+++  +        E
Sbjct: 210 FIGLAGSSPDVTEQREIALAREQLLE 235



 Score = 44.9 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +D+++   V  +L  +      L   +     + D    ++F N ++ E + +D+    +
Sbjct: 92  MDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDI----S 147

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           + +     E L   +    Q       E    ++      +      +GQ   + +T+ P
Sbjct: 148 SGTVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRH-----DGQWRWIEMTATP 202

Query: 409 R-------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           R        G      ++T Q ++      L++ +   
Sbjct: 203 RYSADGRFIGLAGSSPDVTEQREIALAREQLLESERSA 240


>gi|53715746|ref|YP_101738.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60683680|ref|YP_213824.1| two-component sensor histidine kinase [Bacteroides fragilis NCTC
           9343]
 gi|253566441|ref|ZP_04843894.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265767312|ref|ZP_06094978.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|52218611|dbj|BAD51204.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60495114|emb|CAH09933.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis NCTC 9343]
 gi|251944613|gb|EES85088.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263252617|gb|EEZ24129.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301165192|emb|CBW24762.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis 638R]
          Length = 522

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/503 (20%), Positives = 214/503 (42%), Gaps = 33/503 (6%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +  ++  IL  L   + +FD       HN + VEL            ++D ++      +
Sbjct: 39  RERYSTRILDALPDMLTVFD-------HNANIVELASSPTTNHVEGTTSDSIINSNV-KD 90

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHV--IVTSNPRGGTIWMFENLT 420
            +PE+  +++ + N+  V  + ++      L  +G   H    +        + M  +++
Sbjct: 91  IVPEEA-YESVRHNMDKVIHTGKSSTAEHSLMLDGVLHHYENRIFPLDDQYLLCMCRDVS 149

Query: 421 VQVDL----ETKYNTLVKV---QGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEE 471
            + ++    ET+ + +V++     + ++++   + V   G D R    N AF        
Sbjct: 150 QETEMAKINETQRSEIVRLNSLMNDILNNIPVYLFVKDTGNDFRYLYWNKAFAEHSGISV 209

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
            R    T            +   D   +       + +   ++ G +  ++      +++
Sbjct: 210 QRAVGSTDADIFPDKKDAEHFREDDLKVMKLGRIEYLENYTTMSGEVRTVTTMK---TVV 266

Query: 532 PLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           P        +    +VT+  + E+ L        +AD +K+SF+ ++S+E+R+PL  I+G
Sbjct: 267 PSGGQHPYIIGVSWDVTEIKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVG 326

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+ L+          ++ QY + +  +ST+LLNL NDILDL+ ++AG ++L+Y  + L D
Sbjct: 327 FSKLIIE---ADNECEKRQYADIVEHNSTVLLNLFNDILDLSALEAGSLELSYHPVRLKD 383

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +  ++ + +  K  +  +R+ +           D +R+ Q+   +++NA+ F+S G  + 
Sbjct: 384 ICLQLYE-LHVKSVKPEVRLVLDEVDSQLCIQGDWERISQVLVNLITNAIKFTSVGE-IH 441

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
               +      F + + G  IP +   ++F RF       Q  G GLGL+I    +   G
Sbjct: 442 FGFQKKADMVQFYMSDTGKGIPAERVATIFQRFGKIDDFVQ--GTGLGLTICRMLVEKMG 499

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S     T     +P  +
Sbjct: 500 GRIWVRSKQGEGTVFYFTLPMAK 522



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 10/163 (6%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E L+ ++D   K     +     +D L + + VF  +  I         L  +       
Sbjct: 24  EGLSSELDSLKKGRFRERYSTRILDALPDMLTVFDHNANIV-------ELASSPTTNHVE 76

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPL 533
           GT   +I  +  +     + ++     +       KS      L+ D VL   E  I PL
Sbjct: 77  GTTSDSIINSNVKDIVPEEAYESVRHNMDKVIHTGKSSTAEHSLMLDGVLHHYENRIFPL 136

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +   +    +V+      +    +   + + + + N  + ++
Sbjct: 137 DDQYLLCMCRDVSQETEMAKINETQRSEIVRLNSLMNDILNNI 179


>gi|186686850|ref|YP_001870043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186469202|gb|ACC85002.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 835

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 153/383 (39%), Gaps = 17/383 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRLSPGT 478
           T              +    ++ +S+GV V    G+  + NPA   ++    E++ S  +
Sbjct: 221 TDLQQNNLTLQEQTNLMQLILNSMSDGVIVSDDKGKFLIVNPAAEQMFGGITESQQSEWS 280

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
               +          +    L   +        +      +      +  S  PL +A  
Sbjct: 281 EQYGLFQADRVTLFPTQEIPLVRTLRGEQVQNVEMFTRHSKAPEGIWITVSGTPLKDASG 340

Query: 537 ---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                ++   ++T+   AE  + +  EA   A+  K+ F+ ++++ELR+PL  I+G+  +
Sbjct: 341 TLKGGVVVCRDITERKSAELKILQAKEAAEVANHAKSEFLANMNHELRTPLNGILGYAQI 400

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+     +  SKQ + +  I    + LL L+NDILDL+ ++   M L        + L  
Sbjct: 401 LQRDP--ATTSKQQKGLSVIHQCGSHLLTLINDILDLSKLEVQKMDLYPQDFHFANFLTT 458

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKA 712
             +    K  +  I  +        +  AD +RL Q+   +LSNA+ F+  GS    ++A
Sbjct: 459 TVEICRIKAEQKGIAFRYHPANLPTAVHADDKRLRQVLLNLLSNAIKFTDFGSVKFTVEA 518

Query: 713 ARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESF 764
             +            F V++ G  IP +  +++F  F     R     G GLGL+I +  
Sbjct: 519 ISNEETADTRSTRIRFLVEDTGIGIPTEKWQTIFLPFEQAGKRDRNSEGTGLGLAISQQI 578

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           + + G  + ++S+    +     
Sbjct: 579 VQMMGSSIQVNSTPGKGSKFWFE 601



 Score = 42.6 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 44/141 (31%), Gaps = 6/141 (4%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           T+ +Q      IL++++  + + D        N +  +++   +     +  +++   F 
Sbjct: 229 TLQEQTNLMQLILNSMSDGVIVSDDKGKFLIVNPAAEQMFG-GITESQQSEWSEQYGLFQ 287

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIW 414
                L         +       ++ E        P G  + V  T          G + 
Sbjct: 288 ADRVTLFPTQEIPLVRTLRGEQVQNVEMFTRHSKAPEGIWITVSGTPLKDASGTLKGGVV 347

Query: 415 MFENLTVQVDLETKYNTLVKV 435
           +  ++T +   E K     + 
Sbjct: 348 VCRDITERKSAELKILQAKEA 368


>gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 672

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 163/383 (42%), Gaps = 20/383 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             V +  +  +  +   + +D+ S+ + +  P+GR+   N  +R       + L   T  
Sbjct: 143 ALVAVNRQLRSSEQRLQDFLDNASDLIEIVSPEGRLLYVNRTWRETLAYPADDLEKMTCF 202

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ----GTLELLSDSVLEYSIIPLPNA 536
             +A        E+        +  S   ER  +     G  E+  +  L          
Sbjct: 203 DVVAPADRPLLAEA-----LERVQQSQRSERLEVAFLAMGGREIAVEGSLNCQFDKGVPQ 257

Query: 537 QTMLTFVNVTDSVRAER------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                F ++T+  +AE+            +   +A  +K+ F+  VS+ELR+PL +I+G+
Sbjct: 258 AIRCIFRDITERRQAEQVRVEILREQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGW 317

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL+  ++    +  +  +E I  ++ +   L+ D+LD++ V  G M+L    + L+ +
Sbjct: 318 AQLLRARRIDEKAATGA--LESIERNARMQNRLIEDLLDISRVVTGQMRLELQPLELSGV 375

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +    +++        I+++   D  +G  + D  RL QI   +L+NA+ F+ +G TV +
Sbjct: 376 IASAVEAVQPAAAVKQIQLRCRIDAAVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEV 435

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             A+        V++NG  I       +F RF        R   G+GLGLSIV   + LH
Sbjct: 436 DLAQGEIHAQLVVRDNGIGISPAFLDQIFERFRQADSTSTRVHGGLGLGLSIVRHLVELH 495

Query: 769 GGHVSISSSD-EGVTTINCRIPS 790
           GG  +  S+      T   R+P 
Sbjct: 496 GGTAAAESAGKGQGATFTVRLPL 518



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 48/149 (32%), Gaps = 5/149 (3%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           +AG  + V+++  +        + L N +  I I      L + NR++ E        L 
Sbjct: 140 QAGALVAVNRQ--LRSSEQRLQDFLDNASDLIEIVSPEGRLLYVNRTWRETLAYPADDLE 197

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                D +    R       +   ++ +     V   +   ++      G          
Sbjct: 198 KMTCFDVVAPADRPLLAEALERVQQSQRSERLEVAFLAMGGREI--AVEGSLNCQFDKGV 255

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           P+     +F ++T +   E     +++ Q
Sbjct: 256 PQ-AIRCIFRDITERRQAEQVRVEILREQ 283


>gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 524

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 148/366 (40%), Gaps = 20/366 (5%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            + +     I+ L  G         +   N A   +       L        + A   + 
Sbjct: 13  EVAERLARIIELLPAGAVHVRA--GVLSMNAAMEEVTGYARAELP------TLEAWFEKL 64

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSV 549
           Y ++ G  +   +         +++G++      V         ++   +    ++T+  
Sbjct: 65  YGDTSGKLIAHYLDQRAQGFPATVEGSIRRRDGEVRRIEFRACNDSVGEIWIVNDITERD 124

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             ER L    +        K+ F+ ++S+ELR+PLT IIGF +LL     GSL  ++  +
Sbjct: 125 LIERDLIAAKDRAEAGARSKSEFLANMSHELRTPLTAIIGFAELLARE--GSLAPQERHW 182

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +S  L ++VND+LD + ++ G ++L      L  L+ +    +A +     + +
Sbjct: 183 LARIEDASKALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVALLADQAERKGVGL 242

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
            +  D  L      D  RL QI   ++ NA+ F++ G  V ++ + D G        F++
Sbjct: 243 AIFVDDGLCDGLRGDTGRLRQILLNLICNAVKFTNHGG-VTIRVSEDVGAGGPPQVRFAI 301

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP+     VF RFV       R   G GLGL+I    + L GG + + S     
Sbjct: 302 SDTGIGIPDAALDQVFQRFVQADGSVSREFGGTGLGLAICRRLVELMGGEIGVESRVGSG 361

Query: 782 TTINCR 787
           +T    
Sbjct: 362 STFWFS 367


>gi|259502100|ref|ZP_05745002.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041]
 gi|259169913|gb|EEW54408.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041]
          Length = 617

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 164/417 (39%), Gaps = 32/417 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   ++  +     + 
Sbjct: 209 EEMRKQTLRIARGDFSGQVRVMGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLDSVLS 268

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G I + N     L   +      G  I +       Y           
Sbjct: 269 HMSDGVLATDRRGNITIVNNMALQLLGVDHEDDLIGKSIIDALDIRHDY--------TVR 320

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +I S  ++++ +       +D +L     P+      ++ +         +        
Sbjct: 321 ELINS--NQKEMIIDMSAGGNDLILNAYFSPIQRESGFISGLVCVLHDVTSQQ------- 371

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L        +    Q++  I   +  ++
Sbjct: 372 --KEERERKQFVSNVSHELRTPLTSVHSYVEALSDGAWKDQDI-APQFLTVIQNETNRMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-------NNIRIKVISD 674
            ++ND+L L+ +D+G  KLN   + + +L N +       + +           I+    
Sbjct: 429 RMINDLLSLSRMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKNENNKDSKKYTIERYFT 488

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP   
Sbjct: 489 DKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKD 548

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF  V  A   ++ G GLGL+I +  +NL GG + + S +   +T    +P
Sbjct: 549 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGQGSTFYISLP 605


>gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106]
 gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106]
          Length = 1361

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 167/401 (41%), Gaps = 39/401 (9%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           L  + +       + ++ L  GV V+     ++   N   ++L++     + P T +   
Sbjct: 436 LNERLSQSETRLYQFLESLPVGVLVYDGVQDKLMFMNQTAQALFR---KGIIPDTSLETF 492

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELL-SDSVL--EYSIIPLPNAQT- 538
           + T   Y   +D      A+      + KSL+   +E+   D V+  E    P+ +    
Sbjct: 493 SQTYQLYLAGTDKIYPAKALPLIRALKGKSLKSENIEIRHRDQVIPCEVLAQPIYDCDHN 552

Query: 539 ----MLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
               ++ F ++T   +AE         L  KNEAL + D++K+ F+ + S+ELR+PL  +
Sbjct: 553 IIYAVVVFEDITQRKQAEVERHNFTAQLKLKNEALERLDKLKDEFLANTSHELRTPLNGM 612

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG  + +     G+L+  Q + +  I+ S   L  LVNDILD + +    ++L      L
Sbjct: 613 IGIAESMLEGATGTLSELQRKNLIMIAHSGHRLSTLVNDILDFSKLRHNTIRLQVKPTGL 672

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            ++   V     + +   ++++       L    AD  RL QI   ++ NA+ F+ +GS 
Sbjct: 673 REITEIVLTLNQSLVRNKDLQLINDISPDLPLVKADENRLQQILHNLVGNAVKFTERGSI 732

Query: 708 VI-----------------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            +                 +     N     +V + G  IP +    +F  F        
Sbjct: 733 TVSAQVISWDENSDNHQPKVDQKATNSQIAVTVSDTGIGIPANKINRIFESFEQADGSTA 792

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           R+  G GLGL++ +  + LHGG + + S +   +     +P
Sbjct: 793 RQFSGTGLGLAVTKQLVELHGGKIWVESIENVGSNFIFTLP 833



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWE---IDLAFLATNPSNDE 354
             ++   T  Y+ L +L V + ++D     L F N++   L+    I    L T     +
Sbjct: 438 ERLSQSETRLYQFLESLPVGVLVYDGVQDKLMFMNQTAQALFRKGIIPDTSLETFSQTYQ 497

Query: 355 LL----EFLRSANKLPEQLNWKT---WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
           L     + +  A  LP     K      ENI   ++      +    P      +    +
Sbjct: 498 LYLAGTDKIYPAKALPLIRALKGKSLKSENIEIRHRDQVIPCEVLAQP------IYDCDH 551

Query: 408 PRGGTIWMFENLTVQVDLETK---YNTLVKVQGETIDHLS 444
                + +FE++T +   E +   +   +K++ E ++ L 
Sbjct: 552 NIIYAVVVFEDITQRKQAEVERHNFTAQLKLKNEALERLD 591


>gi|313622400|gb|EFR92864.1| two-component sensor histidine kinase [Listeria innocua FSL J1-023]
          Length = 591

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 152/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIDATFETKTMQQKEIILYFPREMILDASVSPILAENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENIEPVDVDEVIEQSSRTIFEMATEKN 462

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I++ V         +  DR +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IQVSVPEKTNPPIIIETDRDKLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGQIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|170760827|ref|YP_001788079.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407816|gb|ACA56227.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 702

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 99/506 (19%), Positives = 209/506 (41%), Gaps = 15/506 (2%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFL 346
           ID+ ++  + D + +   +++N++  I +FD+   L   N++  ++ E      +D+  +
Sbjct: 170 IDILRKKEL-DYIKYLNNVINNISEGILVFDKYSKLILWNKAIEQIGEMKIKKILDIKEI 228

Query: 347 ATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                   L +      K+ +   ++ +  +++       +T+K  +   N  +  +I  
Sbjct: 229 INEYDIYILDDHKNMKYKIKKMNPDYNSSVKDLLLKLVKKDTNKIKYIEYN--SNPIIDE 286

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFR 464
           +N    TI   +N+T  ++ +       +     +D +   +AV   PD   +L N  + 
Sbjct: 287 NNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYRLVNERYE 346

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L +    +   G    N      R     +  ++   +      E         L S  
Sbjct: 347 ELVERLHAKKIKGNLFGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSGE 406

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              + +  + +       V++  S   E    + N  L K +++K+ F   +S+ELR+PL
Sbjct: 407 ERFFKVRYIYHETKNKKRVHIHGSDVTEE--FKSNLELEKVNKLKDEFFTIISHELRTPL 464

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I     L        +N    + ++ I+ ++  LL L+N+ILD++  +AG + LN   
Sbjct: 465 TIIYSSLQLAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNEY 524

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             +      +  SI    +  NI +   +  +      D+ +  +I   +LSNA+ F+ +
Sbjct: 525 FDIVWETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTPE 584

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
             ++ +       +F   VK+ G  IP++    +FNRF    ++      G G+GLS+V+
Sbjct: 585 NKSIYVTLKIYKNNFKLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLVK 644

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
             ++L  G + + S     TT   +I
Sbjct: 645 KIVDLMDGEIKVYSILGNGTTFTVKI 670


>gi|160891792|ref|ZP_02072795.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
 gi|156858270|gb|EDO51701.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
          Length = 867

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 107/502 (21%), Positives = 205/502 (40%), Gaps = 23/502 (4%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + +Q      I  ++   +  +D +  + F NR  +++  +      +     ++   +
Sbjct: 373 RLVEQRDEFDNIFCSIRDGLITYDTDLRIHFVNRPLLQMLGLSSETYTSRFYEGQMAGSI 432

Query: 360 RSANKLPEQLNWKTWKE--------NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
                  E +     K+        +I       E H+ T+   +G+ + +        G
Sbjct: 433 FRIYMNGENILQDLLKKVRTGKRPISIPEKAFMQENHQGTYFPVSGEVVPIFANEK-MTG 491

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +  N++ +      +N  V+         +  +  F   G +       R    T++
Sbjct: 492 MAIVCRNISEEEMQRRFFNMAVEESSIYPWQYNMHMNRFHFPGGLL------RRFGYTDD 545

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFA--AIITSFDDERKSLQGTLELLSDSVLEYS 529
             L     +  +       +   +   +     I +      KS  G+ E        Y 
Sbjct: 546 TDLLARDEMDTLIHPEDLLHTRRNFDAILLGNEINSRMSFRLKSADGSYEWWEFRSTAYD 605

Query: 530 IIPLPNAQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + +     +L         +  E AL    +   +AD++K++F+ ++S+E+R+PL  I+
Sbjct: 606 GLTVDTPYMVLGVCQSIQRYKDTEEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIV 665

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLLK     S   +  Q+VE I+ + T+LL L+NDILDL+ +++G M   +    L 
Sbjct: 666 GFSDLLKDLDAFS-PEEVKQFVETININCTLLLALINDILDLSRIESGTMDFKFGAFNLA 724

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            ++ EV +S    M   ++ +++ I +G+    + D  RL Q+ + +++NA  F+  GS 
Sbjct: 725 FIMQEVHESQRLSMP-RDVELRIEIPEGEDKLVITDSVRLKQVVNNLINNAKKFTVTGSI 783

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
                    G     V++ GS I ED  K +F RF       Q  G GLGLSI ++ ++ 
Sbjct: 784 TFGYVTNREGYTTIFVEDTGSGISEDAQKHIFERFYKEDSFTQ--GAGLGLSICQTIVDR 841

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
             G +S+SS     T     IP
Sbjct: 842 LHGSISVSSELGKGTRFEVVIP 863


>gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 96/584 (16%), Positives = 204/584 (34%), Gaps = 38/584 (6%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-KSYKIVRV 282
            + +      +K +      F + ++ R +    +           + G   +       
Sbjct: 73  DDLKATTENLEKHLANPDHPFDQVVRYRHLKGHTVWVRCRGLAIRDKQGRPIRMLGAHND 132

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVEL 338
           +  + +  +A++   + T+         ++ NL   + I+    D    +   +++  +L
Sbjct: 133 ITEYKQQQLALE-EAQATLRQSEDKYRTLVENLP--VLIYRSEVDAPWAMLHASQNAEQL 189

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD---TWHLP 395
                    +      +   +     L E       K       +    H+     W   
Sbjct: 190 CGYSSDEFLSG-QLTWVDVIVAEDLPLVEAAVQHAIKAREKYTVEYRIRHQKGHVIWVSE 248

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDG 454
            G         +P      +  ++T +V  + + +          +    G+A+     G
Sbjct: 249 TGSAQDYDQNGHP-AYLDGVIADITDRVQAQKEISAQEAKFRGLFELSPVGIAMNDFATG 307

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIR----NIAATCSRYYNESDGWDLFAAIITSFDDE 510
                N A               ++             R     +    +      +   
Sbjct: 308 EFLEFNAAVNEPAGYTPEEFKQLSYFDVTPMEYMEDEKRQLESMEKIGRYGPFEKEYI-- 365

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK       LL+      +  P   A       ++++       + +  EA   A+  K+
Sbjct: 366 RKDGSRYPVLLNGFK---TTTPEGKAVIWSIIQDISE-------IKKAQEAAEAANRSKS 415

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  IIG   L   S+      +   Y+E I+ S+  LL L+NDILD 
Sbjct: 416 EFLANMSHEIRTPMNAIIGLGQLALKSQ-PPPPPRLHDYLEKITGSAATLLTLINDILDF 474

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQ 689
           + ++AG + ++     L+++LN++   +A +  E  + +    D G     V D  RL Q
Sbjct: 475 SKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRLGQ 534

Query: 690 IFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           +   + SNA+ F+ +G  T+  + A    D      +V++ G  +  +  + +F  F   
Sbjct: 535 VLINLTSNAIKFTQQGEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFTQA 594

Query: 746 A--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 +  G GLGLSI    + L GG + + S+    +T +  
Sbjct: 595 DGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638


>gi|320167758|gb|EFW44657.1| multi-sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1432

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 110/534 (20%), Positives = 200/534 (37%), Gaps = 60/534 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +  T +        I  N   AI + D+N  +   NR+F EL++I       +    ++
Sbjct: 330 QQRATSSKNEKKYRNIFDNSHEAIVMIDKNDEIIEANRTFFELYKIPRD----HRCGSQV 385

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
               R    L E  + ++ +E    +  ++ T +      +   L     + P       
Sbjct: 386 TVHFR----LAELFDKQSRRELRRVLASTAGTSQTRTCELDSVALD--GQAYPIRLVASS 439

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLS-----------EGVAVFGPDGRIKLSNPAFR 464
               T + D+     TL       +   S            G   +    R    N A  
Sbjct: 440 LR--TAEDDMSISERTLASSTPGIVPAASTAPEPHATRESAGFRFWRRWTR----NAAGA 493

Query: 465 SLWKTEENRLSPGTHIRNIAA-------TCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           S   T    +      + +         + ++  N S   + F + + S D   +     
Sbjct: 494 SPAATHAQAVRSERSAQPLLQGPNQSTISHAQAANPSARSEGFTSRLPSADTHCEVDMFD 553

Query: 518 LELLSDSVLEYS-IIPLPNAQTMLTFVNVTD--------------SVRAERALTEKNEAL 562
           +   +D   + + + PL   Q   T V                    R   A   +    
Sbjct: 554 IHDYTDEEDDANPVSPLYQYQPRGTPVPPGWYRKPTRLVSIINLTDQRRVNAAESEALKE 613

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A+E K+ F+ ++S+E+R+PL  I+G T ++ T+   SLN++QS Y++ I  S+ ILL 
Sbjct: 614 KQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTT---SLNNEQSDYLDTIKVSAQILLT 670

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-V 681
           ++NDILD + ++AG + ++        +   +   +       N+ +    D +L    V
Sbjct: 671 VINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAATKNLLLSCFIDPQLPRVLV 730

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDF--IFSVKNNGSSIPEDMCK 736
            D  R  QI   ++SN + F++ GS     +L +  D+      F V + G  I  D   
Sbjct: 731 GDPNRFQQILVNLVSNGIKFTTSGSVSLRCLLDSEVDDDHLLARFEVVDTGIGIEADALD 790

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F RF            G GLGL I +S + L GG + + S+    +     I
Sbjct: 791 RLFQRFSQVDSSITRSYGGTGLGLVICKSLVTLMGGTIGVDSTRGEGSRFWFTI 844


>gi|332532401|ref|ZP_08408279.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038044|gb|EGI74491.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 936

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 120/640 (18%), Positives = 248/640 (38%), Gaps = 52/640 (8%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           +KLSN       L   LD  ++  D+  +  + N +++K           +        +
Sbjct: 17  EKLSNSNRRQAKLLAILDECIFECDKHLNFTYINEAWEKKLGYSNDSLIGSNITKLMNCE 76

Query: 246 EEIKKRMISSSALEKNFCETVSTLEH---GNNKSYKIVRVLNS-FGEAGIAIDVSKEITV 301
           + +     S   LE     +V        G    +++  V +   G  G   D+ +    
Sbjct: 77  DIMHFVAYSCCLLEGKQAPSVEIQIKNSLGLMNWFELRLVYDEKSGFIGSFYDIQRHKDS 136

Query: 302 NDQLTHTYEILHNLT-------VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
              LT   + +  L+         + I D+   +++ N+SF  L       +        
Sbjct: 137 QFLLTQQQKYVKRLSLVASHTNNLVIITDKFGVIEWVNKSFEVLTGFTCDEVVGTSP--- 193

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNP---R 409
                     L      +  ++ +    ++      +   +  NG    V + +NP    
Sbjct: 194 -------GQLLQGPKTCEKSRKVMSHAVRNGLPFQVETINYDKNGNVYWVAIDANPVRDD 246

Query: 410 GGTIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            G +  F     N+T +V  E     +       +D++ + V      G +   N A++ 
Sbjct: 247 EGQVKHFIAIETNITQRVKAEQAMAEIEYNYHSVVDNIPDIVLRLDTFGNLLFINQAWQR 306

Query: 466 LWKTEENRLSPGTHIRNIA-ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           + ++  N       I+ IA     +  +    ++     I  FD    + QG      ++
Sbjct: 307 VLQSNVNESLGLPIIKFIAKEDVEKISSTLLDYNQGKRDIRRFDIRLINAQGI-----NN 361

Query: 525 VLEYSIIPLPNAQTML------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +E ++ P+             T V++ + + +E+ L E         E K+ F+ ++S+
Sbjct: 362 WVEITLTPIVGGYESDLSSIAATLVDIQERIESEQILLEAKHQAETLAESKSRFMANISH 421

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  +IG  D+L  +    L S+Q +Y + I  SS  LL++++D+L  +  +A  +
Sbjct: 422 EIRTPLNAVIGSADILHHT---GLTSEQMRYTQMIKTSSDALLSVLDDVLTYSRFEAQAI 478

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
            L+     ++  + E    I     +  + +       + +  + D  R+ QI   +L+N
Sbjct: 479 TLDNQPFSIDTCIEEAIDIITQSALQKRLEVIFDFYPDVPAQVIGDHARVRQIVINLLAN 538

Query: 698 AMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR 751
           A+ F+  G  TV ++     G+      SVK+ G  I ++  +S+F  F+ + +    + 
Sbjct: 539 AIKFTQHGVITVTVRCTHIKGNNLNLHLSVKDTGMGIAKNKIESMFMPFIQSDNSITRKH 598

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL+I +   ++ GG +S+SS     +      P +
Sbjct: 599 GGSGLGLAICKQICDVVGGDISVSSELNKGSEFIVNYPLQ 638


>gi|327478665|gb|AEA81975.1| two-component sensor [Pseudomonas stutzeri DSM 4166]
          Length = 958

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 168/437 (38%), Gaps = 18/437 (4%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNPRGGTIWMFENLT 420
           A + P+    +    ++   ++ S   ++TW  +   +T  V +     G  + +  +++
Sbjct: 255 ARRAPQPAAIEPLLHDLLQQHEDSGLRQNTWCEVQTRRTFEVRLMPTGLGDHLAIARDIS 314

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                    +         +D     + V    GR  L N A  +L       +      
Sbjct: 315 ELQRSRDSLHDQQLFLRRVVDTDDNLIFVRDAQGRFLLCNTALSALLDVRPQDIEQRHPD 374

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKS-LQGTLELLSDSVLEYSIIPLPNAQTM 539
              +A   R     D  D  AA+ +S  + R + +  T    ++   +    PL  +   
Sbjct: 375 EVPSARLLRPLLLGD--DELAALASSSGELRTTEVALTDAHGTEHWFQVVKRPLRISART 432

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              V V   V   R          + +++K  F+  VS+ELR+PLT I G   +L     
Sbjct: 433 CHVVTVAVDVSLRR----------RMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIA 482

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L+ +    +     +S  L+ L+NDILD+  ++AG +  N     +  L+ +    I 
Sbjct: 483 GQLSDEARPLLTIAHKNSERLVRLINDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDIT 542

Query: 660 TKMHENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
               +  + ++ +   +L S  A  D  R  Q+ + +LSNA+  S  G  V +   R   
Sbjct: 543 PYGQDYGVTLEFLDAPELASSEATLDPDRFAQVMANLLSNAIKHSPAGGRVTVDLRRSGE 602

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
                V++ G  IPE     +F RF         QR G GLGL+I  S +    G +   
Sbjct: 603 RLEIGVQDRGPGIPEAFRSRIFERFAQADSSDARQRGGTGLGLAITRSLVQQMNGKIGFD 662

Query: 776 SSDEGVTTINCRIPSKE 792
              +  T    ++P +E
Sbjct: 663 CQPDQGTRFWLQLPLEE 679



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 92/295 (31%), Gaps = 35/295 (11%)

Query: 33  MLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLS-KYHSLLTENNCLTIVWDGKDE 91
           ++ + ++  +LLI        +       L+        +  +LL          D + +
Sbjct: 189 LIGSLVVVALLLI--AFWAVHRNLRIRQQLAGAAQAGEARLGALLQAIPDYLYAVDHRQQ 246

Query: 92  TPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC 151
              +     +R   P     LL        H  ++       LR+         E Q   
Sbjct: 247 VSSLAAGTARRAPQPAAIEPLL--------HDLLQ-QHEDSGLRQN-----TWCEVQTRR 292

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
             ++    +G      +     I  +++E       L +     + + D+ D L++ RD 
Sbjct: 293 TFEVRLMPTG------LGDHLAIARDISELQRSRDSLHDQQLFLRRVVDTDDNLIFVRDA 346

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGES-------RKLFKEEIKKRMISSSALEKNFCE 264
            G  L  N +     +      ++   +        R L   + +   ++SS+ E    E
Sbjct: 347 QGRFLLCNTALSALLDVRPQDIEQRHPDEVPSARLLRPLLLGDDELAALASSSGELRTTE 406

Query: 265 TVSTLEHGNNKSYKIVRVLNSFG-----EAGIAIDVSKEITVNDQLTHTYEILHN 314
              T  HG    +++V+              +A+DVS    +    T     + +
Sbjct: 407 VALTDAHGTEHWFQVVKRPLRISARTCHVVTVAVDVSLRRRMEQMKTEFISTVSH 461


>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1407

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 11/231 (4%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            ++ K+ F+  +S+E+R+PL  +IG T LL+ +    L+ +Q +Y   I +    LL ++N
Sbjct: 891  NKAKSVFLATMSHEIRTPLNGVIGMTALLEDT---PLSEEQREYAHTIRSCGESLLGVIN 947

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADR 684
            DILD + +++G M+L    I L   L EV    A K  +  + +    D       + D 
Sbjct: 948  DILDFSKIESGKMELEQQPIELRSCLEEVLDMFAGKAGQTGLDLIYQIDPLVPPQILGDS 1007

Query: 685  QRLLQIFSKILSNAMDFSSKGST---VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVF 739
             RL QI   ++ NA+ F+ +G     V L A R +   +  F+V++ G  IP      +F
Sbjct: 1008 LRLRQILINLVGNAVKFTHQGEVMVGVQLVAVRPDQAVELAFTVRDTGIGIPGSKIGQLF 1067

Query: 740  NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              F  V ++H  Q  G GLGL I +  I L GG + + S     T     +
Sbjct: 1068 KAFSQVDSSHSRQYGGTGLGLIISQRLIELMGGVIRVESEVGKGTAFRFTL 1118


>gi|73539664|ref|YP_300031.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72123001|gb|AAZ65187.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 948

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 203/518 (39%), Gaps = 41/518 (7%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
            E  +  +L     +L  L   +A  D +      N +F   + I  A      + +   
Sbjct: 112 AEAKLGHELALRKALLACLPEPVAAKDPDLRYIELNPAFEHFFGIAKADAMGRHALEVES 171

Query: 354 -------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                  +LL     A +  E    +    N     +        +  P+G         
Sbjct: 172 LRERMTGDLLGLQDEAIRTMEPRQARLQMRNASGQSRRVNFWALPFRNPDGMP------- 224

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
              GG + +  ++T   +   +     +   + +D L   V VF        S+  +   
Sbjct: 225 ---GGIVTVHFDVTDIDESRERAQAFERRLKDVVDSLP--VTVFQSRLPQDASDRGWEVT 279

Query: 467 WKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDD-ERKSLQGTLEL-LS 522
           +   +        +  + A  S    +   D   L AAI+ S    +   ++G L    +
Sbjct: 280 YAAGDGVGRGIDTVAALGAAPSDSTAFCPQDRPRLRAAILESARTCQPLDVEGRLNRGPA 339

Query: 523 DSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              +    +P  +    +     ++VTD  R   AL E  +A       K  F+  +S+E
Sbjct: 340 PGWIRVRAMPRRDGNCTVWNGVVIDVTDVHRQAEALHEAKDAAEADLRAKEGFLAMMSHE 399

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  I+G  +LL+ +   +L   Q + +     S   L  +++DILD A ++AG + 
Sbjct: 400 IRTPMNGILGLVELLRNT---ALTPAQHRMLTLAHESGHALAQILDDILDYARIEAGRLA 456

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
           +  + + L +LL+ V   +  +  +  ++++V     +  +  AD  R+ QI   +L NA
Sbjct: 457 IVPAPVDLRELLDSVSSLLLPQAQQKGLQLRVHVSADVPATVRADGIRMRQILFNLLGNA 516

Query: 699 MDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           + F+ +GS V L A+ +  D      +  V++ G  I       +F  F+       RR 
Sbjct: 517 IKFTDRGS-VTLHASAETSDGETAALLLEVQDTGIGIASADMPRLFTPFMQGERSVTRRM 575

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL+I  S   + GG + ++S +   TT + R+P
Sbjct: 576 GGTGLGLAISRSLAAMMGGSLVLTSEEGTGTTASLRVP 613



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 3/130 (2%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G + M   +T +   E K    + ++   +  L E VA   PD R    NPAF   +   
Sbjct: 98  GYLRMRRLITQRTKAEAKLGHELALRKALLACLPEPVAAKDPDLRYIELNPAFEHFFGIA 157

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           +   + G H   + +   R     D   L    I + +  +  LQ          + +  
Sbjct: 158 KAD-AMGRHALEVESLRERM--TGDLLGLQDEAIRTMEPRQARLQMRNASGQSRRVNFWA 214

Query: 531 IPLPNAQTML 540
           +P  N   M 
Sbjct: 215 LPFRNPDGMP 224



 Score = 46.1 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 82/300 (27%), Gaps = 22/300 (7%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
            SG  A   +     +   + + T    KL + +++ K L   L   V  +D     +  
Sbjct: 91  ASGVLAIGYLR----MRRLITQRTKAEAKLGHELALRKALLACLPEPVAAKDPDLRYIEL 146

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEE-------IKKRMISSSALEKNFCETVSTLEH 271
           N +++                  +  +E        ++   I +    +   +  +    
Sbjct: 147 NPAFEHFFGIAKADAMGRHALEVESLRERMTGDLLGLQDEAIRTMEPRQARLQMRNASGQ 206

Query: 272 GNNKSYKIVRVLNSFGEAG----IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
               ++  +   N  G  G    +  DV+      ++       L ++  ++ +      
Sbjct: 207 SRRVNFWALPFRNPDGMPGGIVTVHFDVTDIDESRERAQAFERRLKDVVDSLPVTVFQSR 266

Query: 328 L-QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
           L Q  +    E+       +         L    S +      +    +  I    ++ +
Sbjct: 267 LPQDASDRGWEVTYAAGDGVGRGIDTVAALGAAPSDSTAFCPQDRPRLRAAILESARTCQ 326

Query: 387 THKDTWHLPNG---QTLHVIVTSNPRGG-TIW--MFENLTVQVDLETKYNTLVKVQGETI 440
                  L  G     + V       G  T+W  +  ++T         +         +
Sbjct: 327 PLDVEGRLNRGPAPGWIRVRAMPRRDGNCTVWNGVVIDVTDVHRQAEALHEAKDAAEADL 386


>gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
 gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
          Length = 1406

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 151/328 (46%), Gaps = 19/328 (5%)

Query: 480  IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            I  I A     Y  +    L  A+    ++ ++  +   EL   +   +S      +Q  
Sbjct: 872  ITTILANSKTEYLLAQSQQLTTALQERSNELQRQQE---ELRRKNAELHSKAGQLASQNR 928

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               +      RA R+L ++   L+ + + K+ F+ ++S+ELR+PL +++    LL  +  
Sbjct: 929  AIELQNRQIERARRSLEDRAHQLQVSSKYKSEFLANMSHELRTPLNSLLILARLLADNSE 988

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             +L  KQ ++ + I  + + LL L+N+ILDL+ V+AG M+LN S + ++ L++ V+ S  
Sbjct: 989  KNLTPKQVEFAQTIYKAGSDLLQLINEILDLSKVEAGRMELNPSHVSISQLVDYVEASFR 1048

Query: 660  TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST----------- 707
                E  +   V     +      D QRL Q+   +LSNA+ F+S G             
Sbjct: 1049 PLASEKGLAFAVEVSPDVPDQLWTDEQRLQQVLRNLLSNAVKFTSSGEVRLVIEPAWAVE 1108

Query: 708  -VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
             + +    D  + I FSV + G  IPED  + +F  F         +  G GLGLSI  +
Sbjct: 1109 DIDVDTFTDPDEVIAFSVIDTGIGIPEDKLQLIFEAFHQGDGGTSRRFGGTGLGLSISRN 1168

Query: 764  FINLHGGHVSISSSDEGVTTINCRIPSK 791
               L GG + +SS+    +T    +P +
Sbjct: 1169 MAELLGGEIRVSSTVGEGSTFTLLLPVR 1196


>gi|256848491|ref|ZP_05553933.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714758|gb|EEU29737.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 620

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 87/418 (20%), Positives = 165/418 (39%), Gaps = 36/418 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQ-GETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+   + +   + +    + 
Sbjct: 211 EEMRKQTLRIARGDYSGRVAVMGNDELGQLAGAINNLSVRVEESQEVSEAEQRRLNSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G I + N   + L    ++    G  + +I      Y       D   
Sbjct: 271 HMSDGVLATDRRGNITIINETAQQLLDVNDDDNVIGKSLLDILGIRKDYTMRELVDDDVQ 330

Query: 502 AIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            I+    D            S  +L   +S++   +         + D    ++      
Sbjct: 331 QILIDNSD-----------TSGMILSAYFSVVQRESGFVSGFVCVLHDVTSQQKE----- 374

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                 D+ +  FV +VS+ELR+PLT++  + + L             Q+++ +   +  
Sbjct: 375 ------DQERKQFVSNVSHELRTPLTSVKSYVEALSDGAWKDA-EIAPQFLKVVQDETDR 427

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM------HENNIRIKVIS 673
           ++ ++ND+L L+ +D+G +KLN   + +N+L N +       +       +    I+   
Sbjct: 428 MIRMINDLLSLSRMDSGTVKLNLEYVNINELFNYILDRFDMILKKETDPQQKKYTIQRKI 487

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             K      D     Q+   I++NA+ +S  G  +  +        I S+ + G  IP  
Sbjct: 488 TQKDLWVEIDTDTFTQVIDNIMNNAVKYSPDGGVITARLMETKNHVIMSIADQGLGIPRK 547

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F+RF  V  A   ++ G GLGL+I +  +NL GG + + S +   +T    +P
Sbjct: 548 DIGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSIEGKGSTFYISLP 605


>gi|149912708|ref|ZP_01901242.1| sensor histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
 gi|149813114|gb|EDM72940.1| sensor histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
          Length = 728

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 182/453 (40%), Gaps = 25/453 (5%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           ANKL E+   +   E +    ++     +     + + L   +            ENL V
Sbjct: 4   ANKLAEERRARLAAERLLEQKQAELQAANRKLGKHAERLSDQIVETRAEVETVRNENLRV 63

Query: 422 QVDLETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           + DL           +    +I  + +G A F  D R+  +N ++ +++   E      +
Sbjct: 64  KSDLTAAKQKVEIAERRLWHSIQTIRDGFAFFDADSRMIAANDSWLAVFDGLEAVKPGIS 123

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG--TLELLSDSVLEYSIIPLPNA 536
           +I  +                        D  + +      + L + + ++         
Sbjct: 124 YIEILQFLTEEGIVNIGNTPPAQWRERMLDRWQGNAPEPEVIRLWNGAYIKLIDERGQGG 183

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +   +++T+++  E+ L +       A+  K+SF+ ++S+E+R+P+  ++G  +LL  
Sbjct: 184 DVVSLALDITETILREKELQDARRRAEAANHAKSSFLANMSHEIRTPMNGVVGMAELLMD 243

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L  +Q+ Y   I  S   LL ++ND+LD + ++A  + L+     L   ++E+  
Sbjct: 244 T---DLTEEQNLYANTIRKSGEALLVIINDVLDYSKIEAEKLHLHEEPFDLERTVHELVM 300

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712
            +     +  + + V  D  L + F  D  R+ Q+ + ++ NA+ F+ KG  ++      
Sbjct: 301 LLQPNARDKELELLVDYDMFLPTRFHGDPGRIRQVLTNLIGNAVKFTEKGHVLVRVVGMP 360

Query: 713 -----ARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
                + ++ D       +V++ G  I  D    +F  F  V +A   +  G GLGL+I 
Sbjct: 361 AAAPESPEHADAIAHLRITVEDTGIGIAPDKQAHIFGEFNQVEDAKNRRFEGTGLGLAIS 420

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR--IPSKE 792
              I +  G + I S +   +T      +P  E
Sbjct: 421 RKLIAMMQGDIWIGSEEGRGSTFGISLNLPVHE 453



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 75/213 (35%), Gaps = 5/213 (2%)

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
              +  ++    + +   E+ +  + +++       E +S          + VR  N   
Sbjct: 4   ANKLAEERRARLAAERLLEQKQAELQAANRKLGKHAERLSDQIVETRAEVETVRNENLRV 63

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           ++ +     K      +L H+ + +       A FD +  +   N S++ +++  L  + 
Sbjct: 64  KSDLTAAKQKVEIAERRLWHSIQTIR---DGFAFFDADSRMIAANDSWLAVFD-GLEAVK 119

Query: 348 TNPSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
              S  E+L+FL     +         W+E +   ++ +    +   L NG  + +I   
Sbjct: 120 PGISYIEILQFLTEEGIVNIGNTPPAQWRERMLDRWQGNAPEPEVIRLWNGAYIKLIDER 179

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
              G  + +  ++T  +  E +     +     
Sbjct: 180 GQGGDVVSLALDITETILREKELQDARRRAEAA 212


>gi|160878669|ref|YP_001557637.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           phytofermentans ISDg]
 gi|160427335|gb|ABX40898.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           phytofermentans ISDg]
          Length = 490

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/362 (22%), Positives = 157/362 (43%), Gaps = 17/362 (4%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            + H +EGV +F   G+I  +N A        +  +   T+I +I     + + ++   +
Sbjct: 9   VLKHCAEGVFIFDQTGQIFYANDAAMQETGYMDKLVD--TNILDIFPKALKVHMDNMIIN 66

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-----PNAQTMLTFVNVTDSVRAER 553
            F         E   ++      + +     +  L      +  ++    N+T+     +
Sbjct: 67  RFEVEEVKETMEYSIIETFAYRKNQTCYPVRMKLLWGEKEKDNFSVCITRNMTELNAVMK 126

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                 E L++A  +KN F+ ++++ELR+P+  + G  D+L  ++   L   Q + V  I
Sbjct: 127 REKNVKEELKEATGVKNEFLANITHELRTPVNGMKGLADVLLGTE---LTQNQRENVNII 183

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 + N++N ILD + + AG M+L    I +++ L         K++E  ++++V  
Sbjct: 184 RRCCDNMTNIINGILDFSKITAGKMQLENKVIDISNFLKNTLSYHIPKLNEKGLKLQVNI 243

Query: 674 -DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGS 728
            D      + D  RL QI S ++SNA+ F+S G      +      D  +  F V ++G 
Sbjct: 244 GDNVPKKILGDELRLEQILSNLISNAIKFTSVGQLVIEVINTDQKEDEVELFFMVIDSGI 303

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ++    +F  F         +  G GLGL+I +S + L GG + +SS     +T + 
Sbjct: 304 GISKEDMDKLFQSFSQVDGSITRRYGGTGLGLAISKSLVELMGGTIHVSSEIGRGSTFSF 363

Query: 787 RI 788
            I
Sbjct: 364 SI 365


>gi|256423016|ref|YP_003123669.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256037924|gb|ACU61468.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 736

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 131/262 (50%), Gaps = 12/262 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +     +    +   AL    +  +K   +K+ F+ ++S+E+R+P+  ++GFT LL+   
Sbjct: 202 LYITSRIYKQEQLIEALDHSRQQEKKLTVVKDQFLANMSHEIRTPMNAVLGFTHLLQQQ- 260

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN K  +YV  I  +   LL+++NDILD++ +++G+M+L   +  L  +++ ++   
Sbjct: 261 --PLNEKSREYVASIQHAGENLLDIINDILDISKIESGMMRLEPVSFSLRGMMHSLQLMF 318

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             K  E  + + V  D  +      D  RL Q+   +++NA+ F+ +G  V ++ +   G
Sbjct: 319 QPKAQEKLLDLSVHIDAGVPDILYGDVMRLTQVLVNLVNNAIKFTPQG-QVTVRVSPVGG 377

Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGG 770
           +      +F++ + G  I  +   ++F+RF         +  G GLGL+IV+  + L  G
Sbjct: 378 NESGIRLLFTIADTGIGISPNKLSTIFDRFNQAEADITRKYGGTGLGLTIVKQLVELQHG 437

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            +S+ S     +T   ++P  +
Sbjct: 438 TISVESELGKGSTFLVQLPYTQ 459


>gi|91772950|ref|YP_565642.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711965|gb|ABE51892.1| fixL-like, HATPase domain-containing PAS sensor signal transduction
           histidine kinase [Methanococcoides burtonii DSM 6242]
          Length = 396

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 83/355 (23%), Positives = 163/355 (45%), Gaps = 18/355 (5%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G++V   DG I  +N AF  L     + L     +         +Y+E     L   +  
Sbjct: 49  GISVLDMDGNIIYANEAFSQLHGYSADELLNINFLM--------FYHEGQVPHLKRLLDK 100

Query: 506 SFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTFVNVTD---SVRAERALTE 557
               +    +    +  D      +LE ++I   + +    FV + D   + +AE AL  
Sbjct: 101 LLSSDGCENEDVWHMRKDGSIFPAILECNLILDGDNEPSYIFVALRDLTVTKKAEDALKR 160

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                  A+  K+ F+ +VS+ELR+PL +I+GF+++L   + G LN  Q +YV+ +S + 
Sbjct: 161 AMSIADAANCSKSEFLANVSHELRTPLNSIVGFSEILLDGRCGGLNDVQRRYVQNVSNNG 220

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  ++N+IL+++ ++AG  ++N     +   + EVK+S+   +   NI      + +L
Sbjct: 221 NHLSEIINEILEISKIEAGKAEVNLEDFCILPSVMEVKESLMHSISLKNISFVCDVNPEL 280

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D+ +   I   +L NA+ F+S   +V + A+  +      + ++G  IP +    
Sbjct: 281 HPIRLDKTKFKHILHHLLINAVKFTSDHGSVGIHASAISDMMHIVIFDDGIGIPREQLPH 340

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++++F       +R   G GLGL++ +  + L+ G + + S     T ++  +P 
Sbjct: 341 LYDKFYQVDGSTKRKYGGTGLGLALTKKLVILNSGQMWVESEVNVGTKVHMMLPL 395


>gi|46579974|ref|YP_010782.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449390|gb|AAS96041.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234028|gb|ADP86882.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1039

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/514 (19%), Positives = 184/514 (35%), Gaps = 42/514 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                +    T    +     + +  +D +  +   N  F EL       +         
Sbjct: 391 EARTEIKRSETRYRLVFDQSPLGLVQYDGDGIIIDVNERFAELCGASRGQIIG----FNY 446

Query: 356 LEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIVTSNPRGGT 412
           +  +  A  L   L + +        VY S    K      L  G    V   +      
Sbjct: 447 INQMHDARMLGAVLASLRGGIGGFEGVYTSPLGKKTAFIRCLFKG----VKAPAGDVFIG 502

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + E+++ +   E           ET      G             +     +    E+
Sbjct: 503 IGIIEDVSDRKQAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSEEVNRILDLPED 562

Query: 473 R---------LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
                          ++  I A      +     D+    +T     + +    +  + +
Sbjct: 563 YKPGLAEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLRAVGRVDE 622

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                       A  + TF +V +  R E  L E       A+  K+ F+ ++S+E+R+P
Sbjct: 623 G---------SGALVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTP 673

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I G   +L      SL  +Q +  E    S   L +L+ D+LD++ +DAG +++   
Sbjct: 674 LNGIFGMLRMLAD---ASLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSI 730

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
              L+  + +V++       +  + + V  D  + S  V D  RL Q+ + +L NA  F+
Sbjct: 731 PFDLSRSIRQVRELFIPSAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFT 790

Query: 703 SKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGV 754
            KGS V L+A        ++   +FSV++ G  IP++    +F  F       +   +G 
Sbjct: 791 EKGS-VTLRAEHLSPVLANSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGA 849

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGLSI    I + GGH++  S     TT+   +
Sbjct: 850 GLGLSICRRIIRVMGGHLAFESEAGTGTTVYFTL 883


>gi|158334015|ref|YP_001515187.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304256|gb|ABW25873.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 714

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 111/565 (19%), Positives = 210/565 (37%), Gaps = 69/565 (12%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           ++++  +     +AGIA+  +K    +N         + N  +A+  +D    +Q  +  
Sbjct: 156 AFEVDLLKQLADQAGIALAQAKLLADLNQAHQQLRFHVENSPLAVIEWDHACRIQRWSAQ 215

Query: 335 FVELWEID-LAFLATNPSN--------DELLEFLRSANKLPEQLNWKTWKENIFSVY-KS 384
              ++       +   P +            E + +    P         E +   Y K+
Sbjct: 216 AERIFGWSGEEVIGRGPDHWFIHTDDLHLFREHVLNLTGHPFPNYANPDMERLTRNYTKA 275

Query: 385 SETHKDTWHL-----PNGQTLHVI-----VTSNPRGGTIWMFENLTVQVDLETK---YNT 431
            +     W+        G  + ++     V++  +        N  +++ +E +      
Sbjct: 276 GDLIDCEWYSSALFDAEGNLVSILSMAQDVSARQQAEAALQQLNRELEMRVEQRTAALQE 335

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +      +   + + V    G I+  NP         ++ L  G    N+ A  S+  
Sbjct: 336 SEQRFRSLFEAAPDFIYVLDTKGVIQHVNPVVIERSGYRKSELE-GHPFINLFAPKSQVL 394

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            +    DL A      + E     G + L  D   +    PL     ++   +++D    
Sbjct: 395 CQQQFGDLLAQGSHRQELEFMGKNGKI-LTVDCSFKVVKDPLGKTSILVVQRDISDRKAL 453

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER              IK+ F+  VS+ELR+PLT+I G   LL T +LG L+    Q ++
Sbjct: 454 ER--------------IKDEFISVVSHELRTPLTSIHGSIKLLATGQLGDLSDDGQQMLD 499

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               ++  L+ LV+D+LDL  +++G  K++       DL+     ++ +  + + + +K 
Sbjct: 500 IADQNTDRLVRLVSDVLDLQRIESGQAKISKHLCDAADLMTHATDAMRSMAYHHQVTLK- 558

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------------------ 713
            S   L    A+   ++Q  + ++SNA+ FS  G TV L A                   
Sbjct: 559 -STPLLTMVWANPDYMVQTLTNLISNAIKFSQPGGTVELAAELRIEERRAKDSSSPPESH 617

Query: 714 -------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
                    + +  F V + G  IP D  +SVF RF         ++ G GLGL+I    
Sbjct: 618 DTPFPITIKHTELWFQVIDQGQGIPADKLESVFERFQQVDASDAREKGGTGLGLAICRKI 677

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +  HGG +   S     +     +P
Sbjct: 678 VEQHGGKIWAESVLGQGSCFFVALP 702


>gi|315654108|ref|ZP_07907024.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|329919831|ref|ZP_08276782.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
 gi|315488804|gb|EFU78450.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|328937178|gb|EGG33606.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
          Length = 612

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 175/416 (42%), Gaps = 30/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWMFENL-TVQVDLETKY-NTLVKVQGETID 441
            E       + NG  + HV V +N   G +    N+ +V+++   +  ++  +     + 
Sbjct: 208 EEMKDQALRISNGDYSGHVKVYANDEMGELARAFNILSVRIERSQEVSDSERRRLDNVLM 267

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N    +     EN +  G  I  +         E    DL +
Sbjct: 268 HMTDGVIATDRHGNITIINETALNFLDKTENEVK-GEPITQLLG-----LKEVTIQDLMS 321

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                      +    L L +D  L   +    +    +              L +  E 
Sbjct: 322 TQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICV--------------LHDITEQ 367

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            +  +E +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++
Sbjct: 368 QKNENEQR-QFVSNVSHELRTPLTSLRAYVEALNDGAWKNENI-APQFLGVIQNETERMI 425

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI---RIKVISDGKLG 678
            ++ND+L+L+ +D G++K++   + LND L+ +       +  + +   +I+ I   +  
Sbjct: 426 RMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQAL 485

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  +++Q+   I++NA+ +S  G  + ++  + +   I SV + G  IP      +
Sbjct: 486 WVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRKDLSRI 545

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF         ++ G GLGL+I +  +  H G +   SS+   +T    IP ++
Sbjct: 546 FDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEK 601


>gi|309804859|ref|ZP_07698921.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165798|gb|EFO68019.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
          Length = 593

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 175/416 (42%), Gaps = 30/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWMFENL-TVQVDLETKY-NTLVKVQGETID 441
            E       + NG  + HV V +N   G +    N+ +V+++   +  ++  +     + 
Sbjct: 189 EEMKDQALRISNGDYSGHVKVYANDEMGELARAFNILSVRIERSQEVSDSERRRLDNVLM 248

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N    +     EN +  G  I  +         E    DL +
Sbjct: 249 HMTDGVIATDRHGNITIINETALNFLDKTENEVK-GEPITQLLG-----LKEVTIQDLMS 302

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                      +    L L +D  L   +    +    +              L +  E 
Sbjct: 303 TQQELIVTANANTHDELILHADFSLIQRVTGFVSGLICV--------------LHDITEQ 348

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            +  +E +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++
Sbjct: 349 QKNENEQR-QFVSNVSHELRTPLTSLRAYVEALNDGAWKNENI-APQFLGVIQNETERMI 406

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI---RIKVISDGKLG 678
            ++ND+L+L+ +D G++K++   + LND L+ +       +  + +   +I+ I   +  
Sbjct: 407 RMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQAL 466

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  +++Q+   I++NA+ +S  G  + ++  + +   I SV + G  IP      +
Sbjct: 467 WVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRKDLSRI 526

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF         ++ G GLGL+I +  +  H G +   SS+   +T    IP ++
Sbjct: 527 FDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEK 582


>gi|194016316|ref|ZP_03054930.1| sensor protein YycG [Bacillus pumilus ATCC 7061]
 gi|194011789|gb|EDW21357.1| sensor protein YycG [Bacillus pumilus ATCC 7061]
          Length = 612

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 88/390 (22%), Positives = 157/390 (40%), Gaps = 32/390 (8%)

Query: 410 GGTIWMFENLTVQVDLETKYNTL--VKVQGETIDHLSEGVAVFGPDGRIKLSN-PAFRSL 466
           G     F +LT +++ E +  T    K     I ++++GV     +G I L N PA   L
Sbjct: 239 GQLATTFNHLTRELE-EAQLMTEGERKKLSSVIAYMTDGVIATNQNGAIILLNSPALELL 297

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             + E  L     I ++           +    F  ++ + D     ++   +L    V 
Sbjct: 298 NVSRETALEM--PITSLLGL--------EDTHTFEDLVENQDSMLIEIEREDQLSVLRV- 346

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            +S+I   + +       + D    E           K D  +  FV +VS+ELR+PLT 
Sbjct: 347 NFSVIQKEHGKIDGLIAVIYDVTEQE-----------KIDAERREFVANVSHELRTPLTT 395

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +  + + L    +G       +++      +  ++ LVND+L L+  D+   + N     
Sbjct: 396 MRSYLEALAEGAIGD-KELAPRFLSVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWTN 454

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
               ++ V         E ++        +      D+ ++ Q+   I+SNAM +S +G 
Sbjct: 455 FIKFISLVIDRFE-MTKEQHVDFIRNLPQREIYVEIDQDKITQVLDNIISNAMKYSPEGG 513

Query: 707 TVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
            +   +    +NG  +FSVK+ G  IP+     +F RF        R   G GLGL+I +
Sbjct: 514 HITFTVDLDEENGLVLFSVKDEGIGIPKKDMDKIFERFYRVDKARTRKLGGTGLGLAIAK 573

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +  HGG +   S +   TT+   +P  E
Sbjct: 574 EMVQAHGGDIWADSIEGKGTTVTFTLPYNE 603


>gi|146280451|ref|YP_001170604.1| signal transduction histidine kinase [Pseudomonas stutzeri A1501]
 gi|145568656|gb|ABP77762.1| probable signal transduction histidine kinase [Pseudomonas stutzeri
           A1501]
          Length = 793

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 118/732 (16%), Positives = 249/732 (34%), Gaps = 98/732 (13%)

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAI-KIEGRVSGSCAFL--RILSLDGIYSELA 179
             ++  +  +    +G              +   +G   G+   +  +   L     E+ 
Sbjct: 90  DALQDPRFRDNPLVQGDP---HIRFYAGTPLTSPDGHNLGTLCVIDRKPRRLSSEQREIL 146

Query: 180 ETTLKC-----------KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE- 227
           E   +             + +   ++ + + DS    V      G +   N + ++    
Sbjct: 147 ERLGRQVIRLFEQHLLAHRHAEQAALQQAILDSASSAVLITRPDGIVTSVNPTAERLLGY 206

Query: 228 ----------TEGIVFQKAIGESRKLFKEEIKKRMISS-SALEKNFCETVSTLEHGNNKS 276
                     T  +   +A+    KL   E++  + +  + L          +     + 
Sbjct: 207 SEQALAGHPLTTALFRHEALERRAKLLSSELEMPVEAGFAVLTAPLHLGRREMSEWRLRH 266

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-------------ILHNLTVAIAIFD 323
                V    G   I     ++  +   L + Y+             I   +   +  F 
Sbjct: 267 QSGSEVPVLLGVTAIH---DEQEQLRGYLINAYDLAYQEQLQLRLQQIAAQVPGMLFQFH 323

Query: 324 QNRY----LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
                     + +    +++ +    LA+  S   ++  + + +           +  + 
Sbjct: 324 WRGNGSSCFPYVSEGVEQIYGLSPGQLAS--SFAPIVGRVHALD-----------RSTLL 370

Query: 380 SVYKSSETHKDTWHL------PNGQTLHVIVTSNP----RGGTIW--MFENLTVQVDLET 427
           S  + +      WH       P    + V   + P     G  +W     ++T +   + 
Sbjct: 371 SSIRKAAAELTPWHSEHRVDHPCKGLIWVEARATPLRQVDGSVLWHGFVTDITARKAEQL 430

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           + +   ++    ++ LSE V     +G + L N   +     +             AA  
Sbjct: 431 ELDKQQEMNRRLLEALSEAVIACDAEGNLTLFNEKAKQWHGAD-------------AAPV 477

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           S     S      A  +T    E   L+  L    + V+++ ++ L          N   
Sbjct: 478 SPDEWASHYQLYRADGVTPLQPEEIPLRRAL--GGEHVIDHEMVLLSQGTPRHVLSNADP 535

Query: 548 SVRAERALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              ++  L      L       + + ++  F+  VS+ELR+PLT+I G   L+ ++ +G 
Sbjct: 536 LYTSDGQLLGAVAVLHDITERKRIERLQREFISTVSHELRTPLTSITGALALVCSNVMGE 595

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +  +  + ++    +S  L  L++D+LD+  + AG M+ +     L   L    +S  + 
Sbjct: 596 VPGQMRELLDIAQQNSQRLGALIDDLLDMDKLHAGKMRFDLLEQPLLPQLELALRSNGSY 655

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
              + +++++  D        D  RL Q+ S +LSNA  FS  G  V L A   +G    
Sbjct: 656 AERHGVQLRL-GDCPAVQVEIDAMRLQQVLSNLLSNAAKFSPPGEQVELSARMRDGHVRV 714

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  I ++  + VF +F         Q+ G GLGL+I +  I   GG +   S+  
Sbjct: 715 SVRDRGPGISDEFRERVFQKFAQADSSDSRQQGGTGLGLAISKELIEHMGGQIGFESAPG 774

Query: 780 GVTTINCRIPSK 791
                   +P +
Sbjct: 775 QGACFWFELPVR 786


>gi|113968826|ref|YP_732619.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883510|gb|ABI37562.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1681

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 103/517 (19%), Positives = 201/517 (38%), Gaps = 42/517 (8%)

Query: 291  IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            IA  +  E  ++  +     +  +   A  I D    +   N + + L +          
Sbjct: 692  IAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLKYQ-------- 743

Query: 351  SNDELLEFLRSANKLPEQLN-------WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            S D+L+   R+    PEQ +       ++   + +    +     +          + V 
Sbjct: 744  SKDQLIGQ-RTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITTAAEIIHVDVT 802

Query: 404  VTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +      G++++   + +L+ +  +         +    +     GV +   +G  +  N
Sbjct: 803  LKRIELNGSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWIC-VEGVCRYVN 861

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                 +       L  G  +  I      Y       DL     T F+ +     G    
Sbjct: 862  EQITEMTG-----LEVGQSVYRIFVQPEDYRCHIRELDLSQDS-TVFETQLFDAHGQRR- 914

Query: 521  LSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                VL  S   + + Q        ++TD+   +  L    +A   A+  K+ F+ ++S+
Sbjct: 915  ---DVLLTSYHTVQDGQNANLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFLANMSH 971

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            E+R+P+  I+G + L+  ++   L+SKQ  YV  +  ++  LL ++NDILD + ++A  M
Sbjct: 972  EIRTPMNAILGMSYLVLQTE---LSSKQRDYVGKVHQAAGSLLGILNDILDFSKIEAEKM 1028

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
             +  +   L+D+L+ +   ++ K+ E N+        +L  +   D  RL QI     +N
Sbjct: 1029 DIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQILINYCNN 1088

Query: 698  AMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
            A+ FS   S+V+L           +  F V++ G  IP+     +F  F  V  +   + 
Sbjct: 1089 AVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPDQKQGVLFGSFEQVDASTSREY 1148

Query: 752  RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +   +L GG V   S     +    R+
Sbjct: 1149 GGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRL 1185


>gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
 gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
          Length = 807

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 9/241 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +       A+  K+ F+ ++S+E+R+P+ +I+G + LL TS   +L+  Q  ++  I
Sbjct: 457 ALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTS---NLSDDQRNHLITI 513

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+L+NDILD++ +DAG + +      L  L+ +V      K  ++ +++ +  
Sbjct: 514 DKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDL 573

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF---IFSVKNNGSS 729
           D  L   + D  R+ QI    +SNA+ F+ +G  T+ ++ A  +        SV++NG  
Sbjct: 574 DKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIG 633

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  D    VF  F        R   G GLGL+I +   +L GG V + S     +T    
Sbjct: 634 LSTDDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVESRLGDGSTFWLT 693

Query: 788 I 788
           +
Sbjct: 694 L 694


>gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
 gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
          Length = 1214

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 89/331 (26%), Positives = 142/331 (42%), Gaps = 21/331 (6%)

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            G  I  I A  SR           A  +    DE +  Q  L   +  + E +   L   
Sbjct: 681  GPTINTIKA-NSRTEALLKESQRLATELQKRSDELQRQQEELRRSNAELEEKAA--LLAK 737

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     +      +A RAL E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 738  QNRAIEIQNFQIEQARRALEERAEQLAISSRYKSEFLANMSHELRTPLNSLLVLAKLLAD 797

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  G+L  +Q ++ + I  + T LL L+NDILDL+ V+AG M ++   I L  L+  ++ 
Sbjct: 798  NAEGNLTPRQVEFAKTIHEAGTALLQLINDILDLSKVEAGRMDIHPQQISLPRLVEYMEA 857

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            + A    +  +   V  D         D QRL Q+   +LSNA+ F+ +G  V L+  R 
Sbjct: 858  TFAPLAEDKELAFTVRLDPSAPQEIYTDEQRLQQVLRNLLSNAIKFTHEGE-VRLEVGRA 916

Query: 716  NGDFI--------------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
              D                F V + G  I  +    +F  F         +  G GLGLS
Sbjct: 917  PADVQYADEALKNTPDMLAFRVIDTGIGIAPNKLDVIFEAFRQADGTTSRKYGGTGLGLS 976

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            I      L GG + ++S+    +T    +P+
Sbjct: 977  ICRQIARLLGGEIHVASTPGEGSTFTLYLPA 1007


>gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1027

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 130/250 (52%), Gaps = 10/250 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
               +AE  L +  EA   A++ K+ F+ ++S+ELR+PL  I+GFT L++     SL + 
Sbjct: 543 HTQHQAE-ELKQAKEAADAANKAKSEFLANMSHELRTPLNAILGFTQLMQRDV--SLKAD 599

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QY++ ++ S   LL L+ND+L+L+ ++AG   LN +   L  LL  ++  +  K    
Sbjct: 600 HQQYIKIVNKSGEHLLGLINDVLELSKIEAGRTTLNETEFDLYQLLCSLETLLKLKAQAK 659

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFI 720
           N+ ++   D ++  F+  D  +L Q+   +L NA+ F++KG  V L+            I
Sbjct: 660 NLSLRFEIDSQVPPFIKNDENKLRQVLINLLGNAIKFTNKG-NVTLRVINQELEQLNTLI 718

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           F+V++ G  IP +  + +F  F         + G GLGL I ++F+ + GG ++I S   
Sbjct: 719 FAVEDTGPGIPPEEVQDLFKAFKQTKTGRESQEGTGLGLRISQNFVQMMGGKITIESEVG 778

Query: 780 GVTTINCRIP 789
             +  +  +P
Sbjct: 779 KGSCFSFALP 788


>gi|218709148|ref|YP_002416769.1| sensory box histidine kinase/response regulator [Vibrio splendidus
            LGP32]
 gi|218322167|emb|CAV18281.1| sensory box histidine kinase/response regulator [Vibrio splendidus
            LGP32]
          Length = 1430

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 206/515 (40%), Gaps = 50/515 (9%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--------AFLATN 349
            E  +  Q+     +L  +   I + + +  +   N +  +L   +L        +   T 
Sbjct: 542  ESALKHQVEFERSLLDAMPFPIVVRNLDNQIISLNSAAQQLTGFELIEGAIVNNSDEDTM 601

Query: 350  PSNDELLEFLRSANKLPEQ-LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
              +  +L  L      P+   ++  WK                 ++ NG           
Sbjct: 602  IHHGVVLPRLEKEVASPQGSKHYAYWKCP---------------YISNGNI--------- 637

Query: 409  RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
              G++ + ++LT   + +    +      +  ++L  G  +     +  L +  F  +  
Sbjct: 638  -EGSVTILDDLTELYEAKKIAKSADDRVQKLANNLH-GAVIQHIQPKRSLHDIEFVFISD 695

Query: 469  TEENRLS-PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              E  L      +     +     N  D   L   + +   + + SL   + + +     
Sbjct: 696  GVEELLGLTPAQLHRSPNSFFAPLNAQDRRTLIKRVRSGNKEGKLSLDIGVNIDNQKRWL 755

Query: 528  YSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                 + +      +     ++T+  + +  LT+  ++   A E K+ F+ ++S+E+R+P
Sbjct: 756  NLQSKISDLGEYYEWDSVLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTP 815

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I+   +L +  ++G    +  +    +S S+  LL++VNDILD + ++AG + L+Y 
Sbjct: 816  LGGIVSLLELSEQYEVGY---EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQ 872

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
               L+ L   V Q  A + H   ++ K   D +L   V  D  R+ Q+ + +LSNA+ F+
Sbjct: 873  PASLDTLTLRVTQLQARQAHAKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNAIKFT 932

Query: 703  SKGST----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
              G+      +L    +     F V ++G  I E+  +++F  FV        +  G GL
Sbjct: 933  EYGTVGLAAKLLDLDGEQQQICFEVFDSGIGISEEHIRNLFQPFVQADEGTTRKYGGSGL 992

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GL+I +  I   GG ++++S     +T +  +P K
Sbjct: 993  GLTISKQLIEQMGGSLNVTSKINIGSTFSITLPLK 1027



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 94/282 (33%), Gaps = 32/282 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ +       L + +   + L D++ F +  R+    I+  N + ++ T  E I  
Sbjct: 531 LRREVEDRKRTESALKHQVEFERSLLDAMPFPIVVRNLDNQIISLNSAAQQLTGFELIEG 590

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF---GEAG 290
                    +     +  MI    +     + V++ +   + +Y     +++    G   
Sbjct: 591 A--------IVNNSDEDTMIHHGVVLPRLEKEVASPQGSKHYAYWKCPYISNGNIEGSVT 642

Query: 291 IAIDVSKEITVNDQLT----HTYEILHNLTVAIAIF-DQNRYL-----QFHNRSFVELWE 340
           I  D+++                ++ +NL  A+       R L      F +    EL  
Sbjct: 643 ILDDLTELYEAKKIAKSADDRVQKLANNLHGAVIQHIQPKRSLHDIEFVFISDGVEELLG 702

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--Q 398
           +  A L  +P  +     L +        + +T  + + S  K  +   D     +   +
Sbjct: 703 LTPAQLHRSP--NSFFAPLNAQ-------DRRTLIKRVRSGNKEGKLSLDIGVNIDNQKR 753

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            L++    +  G        LT   +L+ +   L + +   I
Sbjct: 754 WLNLQSKISDLGEYYEWDSVLTDITELKQQQEELTQARQSAI 795


>gi|317480271|ref|ZP_07939376.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316903564|gb|EFV25413.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 867

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 107/502 (21%), Positives = 205/502 (40%), Gaps = 23/502 (4%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + +Q      I  ++   +  +D +  + F NR  +++  +      +     ++   +
Sbjct: 373 RLVEQRDEFDNIFCSIRDGLITYDTDLRIHFVNRPLLQMLGLSSETYTSRFYEGQMAGSI 432

Query: 360 RSANKLPEQLNWKTWKE--------NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
                  E +     K+        +I       E H+ T+   +G+ + +        G
Sbjct: 433 FRIYMNGENILQDLLKKVRTGKRPISIPEKAFMQENHQGTYFPVSGEVVPIFANEK-MTG 491

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +  N++ +      +N  V+         +  +  F   G +       R    T++
Sbjct: 492 MAIVCRNISEEEMQRRFFNMAVEESSIYPWQYNMHMNRFHFPGGLL------RRFGYTDD 545

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFA--AIITSFDDERKSLQGTLELLSDSVLEYS 529
             L     +  +       +   +   +     I +      KS  G+ E        Y 
Sbjct: 546 TDLLARDEMDTLIHPEDLLHTRRNFDAILLGNEINSRMSFRLKSADGSYEWWEFRSTAYD 605

Query: 530 IIPLPNAQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + +     +L         +  E AL    +   +AD++K++F+ ++S+E+R+PL  I+
Sbjct: 606 GLTVDTPYMVLGVCQSIQRYKDTEEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIV 665

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLLK     S   +  Q+VE I+ + T+LL L+NDILDL+ +++G M   +    L 
Sbjct: 666 GFSDLLKDLDAFS-PEEVKQFVETININCTLLLALINDILDLSRIESGTMDFKFGAFNLA 724

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            ++ EV +S    M   ++ +++ I +G+    + D  RL Q+ + +++NA  F+  GS 
Sbjct: 725 FIMQEVHESQRLSMP-RDVELRIEIPEGEDKLVITDSVRLKQVVNNLINNAKKFTVTGSI 783

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
                    G     V++ GS I ED  K +F RF       Q  G GLGLSI ++ ++ 
Sbjct: 784 TFGYVTNREGYTTIFVEDTGSGISEDAQKHIFERFYKEDSFTQ--GAGLGLSICQTIVDR 841

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
             G +S+SS     T     IP
Sbjct: 842 LHGSISVSSELGKGTRFEVVIP 863


>gi|83941860|ref|ZP_00954322.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           EE-36]
 gi|83847680|gb|EAP85555.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           EE-36]
          Length = 713

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 180/429 (41%), Gaps = 22/429 (5%)

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           +  + + Y+  + H     +   +T   +         +     ++       +     +
Sbjct: 25  QAELCAAYRKLDDHAQNVSVEISETRAEVENIRGENKRV-----MSDLCAAREQIELTQR 79

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
               +++ + +G A F  D  + ++N ++ +++   +  + PG     I    +     +
Sbjct: 80  RLWHSVETIHDGFAFFNKDNEMIMANRSYLAVFDGIDA-IRPGVSYSTILRVLTDEGIVN 138

Query: 495 DG---WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            G    + + A +     ++      ++L + + ++           +    ++T++V  
Sbjct: 139 IGRRTPEEWRAKMLLRSQQKAPAPIIIKLWNGAYIKIVDQRGKGGDIVSLARDITETVEY 198

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L +       A+  K+ F+  +S+E+R+P+  I+G T++L  +   +L   Q  YV+
Sbjct: 199 QRKLVDARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDT---ALTQDQRLYVD 255

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL ++ND+LD + ++A  + ++ +   L  +  EV   +     +  + + +
Sbjct: 256 TIKTSGEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQPLAVQKGLDLAL 315

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFS--VK 724
             D  L    V D  R+ Q+ + ++ NA+ F+  G  ++++A       +G+ +    ++
Sbjct: 316 DYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFTQNGH-ILIRATGLPDAGSGNVLIKILIE 374

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  DM + +   F   +        G GLGL+I +  + L GG + ++S     +
Sbjct: 375 DTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQLMGGEIWVTSEHGIGS 434

Query: 783 TINCRIPSK 791
                +P K
Sbjct: 435 CFGFELPLK 443



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 73/211 (34%), Gaps = 15/211 (7%)

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
               + +  ++      +   E+ +  + ++     +  + VS          + +R  N
Sbjct: 1   MKPADQLAHEQRRRAEVEALLEQTQAELCAAYRKLDDHAQNVSVEISETRAEVENIRGEN 60

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
               + +     +      +L H+ E +H      A F+++  +   NRS++ +++  + 
Sbjct: 61  KRVMSDLCAAREQIELTQRRLWHSVETIH---DGFAFFNKDNEMIMANRSYLAVFD-GID 116

Query: 345 FLATNPSNDELLEFLRSA------NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            +    S   +L  L          + PE+     W+  +    +          L NG 
Sbjct: 117 AIRPGVSYSTILRVLTDEGIVNIGRRTPEE-----WRAKMLLRSQQKAPAPIIIKLWNGA 171

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
            + ++      G  + +  ++T  V+ + K 
Sbjct: 172 YIKIVDQRGKGGDIVSLARDITETVEYQRKL 202


>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1320

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 130/853 (15%), Positives = 264/853 (30%), Gaps = 125/853 (14%)

Query: 44  LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD--GKDETPEIIGQLHQ 101
           L+  +  L  +  E     + +    ++Y +L        +V D  G        G    
Sbjct: 50  LLIYQAELELQNIELRDTQAAVERIANRYTALFYGVPQPILVVDRHGLILMANHAGDRLF 109

Query: 102 RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIE-GRVS 160
            +         L     +       L    ++   +G++            +  + G+ +
Sbjct: 110 VLREKHKRQHYLP--RLVARESDGVLDDTLQRAWDDGEA-----HCPEIRFLTTDAGQFT 162

Query: 161 GSCAFLR--------------ILSLDGIYSELAETTLKCKKLSNHISVFKVLFD-SLDFL 205
           G    +R              I+ L       +E      +L +  + +++L D S D+ 
Sbjct: 163 GELHVVRVPAEDDDQHHLVCSIVDLTERLRHESEIHAAYARLRDSETRYRMLADYSADWD 222

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK---------RMISSS 256
            W        L+ + + +         F        +L   + +             +  
Sbjct: 223 YWL-GSDRRYLYVSPACEYVCGYPPDAFMDDPRLMDRLIHPDDQPLWLEHKHEISQSTDD 281

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVL-----NSFGEAGIAIDVSKEIT---VNDQLTHT 308
           A        +   +        + R +        G  G+  D++       + D     
Sbjct: 282 APHVRLQLRLRRPDGSQRWIEHVCRPVYDVDGTHQGWRGVNRDITHRKQNELLMDLQKRR 341

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFV---ELWEIDLAFLATNPSNDELLEFLRSANKL 365
            E L  L     I D    + F          L    + F+    SN E +E +  +   
Sbjct: 342 AEALLELPQ---IADDLDEIGFMQHGLALAESLTGSLMGFIHLVNSNQETIELVAWSQAT 398

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHL-------------------PNGQTL-HVIVT 405
            E    +     +      +    D                       P+   L   +  
Sbjct: 399 VEDSGCQLPPNAVHYAISQAGVWADALRRRRPITCNDYPALAGKCGLPPDHAPLQRFLTI 458

Query: 406 SNPRGGTIWMF-------ENLTV------------------QVDLETKYNTLVKVQGETI 440
               GG + M         + +                   Q   E              
Sbjct: 459 PVIEGGLVRMLAGVGNKASDYSELDVESVQLIANAIWRTVRQRRAEQALRLNESRFRRLS 518

Query: 441 DHLSEGV---AVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
             +S+ V       P+  ++   N A  ++       +      R +     R   +   
Sbjct: 519 MLMSDIVYSCIEIEPERYKLDWLNGAVETITGHTREAILAMGTWRRLVVLEDRSLFDRHQ 578

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
             L    ++S     +   G+   + + + +         +      ++ +   AE+ L 
Sbjct: 579 AGLKEEAVSSCQLRLRRRDGSSAWV-EIINQCLTDECGGRRLYGGIKDIGERKLAEQQLQ 637

Query: 557 EKNEALRKADE--------------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +    +   ++               K+ F+ ++S+E+R+P+  +IG T LL  +    L
Sbjct: 638 QYTRRMEIQNQELDRALAQAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLDT---DL 694

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q +  E +  S   LL L+NDILD + ++AG ++L +    L  L+ EV + +A   
Sbjct: 695 DPEQRRLAEIVRDSGENLLALINDILDFSKIEAGKLELEHLEFDLRLLIEEVLEMMAFNA 754

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
           HE ++ +      ++ +    D + L Q+   ++ NA+ F+ +G  V L+ A +  +   
Sbjct: 755 HEKDLELTYRIAPQVPTAVRGDPRYLRQVIVNLMGNAIKFTERGE-VGLQLALERAEAGR 813

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F V ++G  IPED    +F  F        RR  G GLGL I +    L  G + +
Sbjct: 814 ALIRFEVHDSGIGIPEDQLGKLFTAFNQVDSSTTRRFGGTGLGLVIAKQLAQLMNGDIGL 873

Query: 775 SSSDEGVTTINCR 787
            S     +     
Sbjct: 874 ESRPGQGSRFWFT 886



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 13/220 (5%)

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM-FENLTVQVD 424
           P   +W   +          +       L  G+     +T N       +  +N+    D
Sbjct: 8   PTSSDWPRVRARARQALDRGDLEWAERRLARGEIDLPELTENLLIYQAELELQNI-ELRD 66

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            +     +          + + + V    G I ++N A   L+   E         R +A
Sbjct: 67  TQAAVERIANRYTALFYGVPQPILVVDRHGLILMANHAGDRLFVLREKHKRQHYLPRLVA 126

Query: 485 ATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                  ++      D  +     I     +     G L      V+            +
Sbjct: 127 RESDGVLDDTLQRAWDDGEAHCPEIRFLTTDAGQFTGELH-----VVRVPAEDDDQHHLV 181

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + V++T+ +R E  +      L +  E +   +   S +
Sbjct: 182 CSIVDLTERLRHESEIHAAYARL-RDSETRYRMLADYSAD 220


>gi|149183788|ref|ZP_01862190.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
 gi|148848506|gb|EDL62754.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
          Length = 941

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 113/538 (21%), Positives = 222/538 (41%), Gaps = 69/538 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA--------- 347
           +     +QL H  E++++L+ ++   D+   L    + F  +   D   +          
Sbjct: 293 QMENRENQLRHHNELINSLSNSL---DKQEVLNSIVKGFSGVLRADKGIIVILDSEKTYA 349

Query: 348 ----TNPSNDELLEFLRSAN--KLPEQLNWKTWKENIFSVYKSSETHKDT-WHL------ 394
               +     + +  L +    +L E+ +    K  +    K         W L      
Sbjct: 350 KWGVSQVGVQQFISHLDNGTLERLQEEQHPHVIKRRLPREEKGIHNEDQPCWDLYLPVLS 409

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK-------------VQGETID 441
           P+G    V+V S   GG  +  E +     L  + +  ++             +  + ++
Sbjct: 410 PSGNVEAVMVYSRFSGG--YSAEEMQEYSSLSKQVSISLEKIKVFESSEADRMMNNDILN 467

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEE-------NRLSPGTHIRNIAATCSRYYNES 494
            + EG+ +   +G+I   N  F S+++++        + L     + +I       YN +
Sbjct: 468 TIHEGIQLLDTNGKIIHINETFSSIYQSDHLNQYIDKSFLEWFNDVSDIVEEPVELYNFA 527

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           +       ++T+  +     Q  L      +++    PL   +T+  ++ V      E  
Sbjct: 528 N------ELLTNEINAPNQAQYKLINGQPRMIQVYAEPLYRNETLTGWILVHRDFTKE-- 579

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                    +AD++KN  V  VS+ELR+PL +++G+T+LL   +L     +Q +Y+  I 
Sbjct: 580 --------YEADQMKNELVSTVSHELRTPLASVLGYTELLINRELKP--ERQKKYLNTIY 629

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L+ND LD+  +++G          L  LL EV + I      ++I+   +SD
Sbjct: 630 QEANRLTVLINDFLDVQRMESGKQTYEKKYESLTPLLKEVIEGIKINTSIHDIQF--VSD 687

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                 + DR +LLQ+F  ++ NA+ +S  G  + +K      +   S+ + G  +PE+ 
Sbjct: 688 ADDDMVLGDRDKLLQVFQNLIQNAVKYSPAGGNITIKLHSAPKELHVSIIDEGLGVPEEA 747

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             ++F +F  V N+ R +  G GLGL+I +  I  H G + +SS     +T    +P 
Sbjct: 748 MPNLFTKFFRVDNSDRRKIGGTGLGLAIAKEIIKAHEGDIVLSSKLGQGSTFTVILPK 805


>gi|75909568|ref|YP_323864.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75703293|gb|ABA22969.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 575

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 96/389 (24%), Positives = 169/389 (43%), Gaps = 48/389 (12%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             N+    + + +       + ++++ L   V++      +     A    W+T      
Sbjct: 221 LSNILQTAESKERQRQRDVEEAKSVERLIVMVSM------LVSVAIAAIVAWRTSRAIAE 274

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           P   +  +A   +R  N    +DL A + T  +DE   L  +L  L + V E +      
Sbjct: 275 PVITVTQVAEQVARKPN----FDLRAPVTT--EDEIGLLAKSLNRLIERVSERT------ 322

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                            + L +  E    A + K+ F+ +VS+ELR+PL  +IG + LLK
Sbjct: 323 -----------------KELEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLK 365

Query: 596 TSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 SL+ + +  +E I+++   LL L+NDILDL+ ++AG M L      +  L+N V
Sbjct: 366 DDAADLSLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNV 425

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++   + +NN  +++  D  LG+  AD+ R+ Q+   +LSNA  F++ GS + L   R
Sbjct: 426 VLTVKPTIEKNNNILEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFTTNGS-IKLTVRR 484

Query: 715 DNGDFI---------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVES 763
           +  DF+         F+V + G  +       +F  F            G GLGL+I   
Sbjct: 485 EKEDFLAEMPFGAISFTVSDTGIGMSPSQQLQLFQPFTQGDTSTTKKYGGTGLGLAISRH 544

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F  + GG + + S     +T    +P +E
Sbjct: 545 FCQMMGGEIIVKSQPGLGSTFTVYLPLQE 573


>gi|42524880|ref|NP_970260.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39577090|emb|CAE78319.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 838

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 176/395 (44%), Gaps = 25/395 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            + +   +  + +       +  +QG+       ++ +SE + V   +G     N A + 
Sbjct: 185 VLIIASRVLQRKEQHETRKAVEALQGKSILLDTILNSMSEALIVVDQNGWFTHYNAAAQR 244

Query: 466 LWKTEENRLSPGTHIRNIA---ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           +  ++   +S  + +  +        R +   +     A      DD    +Q + E   
Sbjct: 245 IIGSKIKEISTDSSVEQLGFFNQAEGRPFTRKELPLYRALSGDRVDDLEIFVQNS-EHPE 303

Query: 523 DSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              +  S  PL +     +  ++ F +++     E+      EA  +A + K+ F+  +S
Sbjct: 304 GIYISLSSRPLNDIDGGISGALIVFKDISRRKMVEQEWIRAREAALEASQKKSDFLAAMS 363

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+P+  +IG T LL  +    LN +Q+ YV  I  S+  LL L+ND+LD + ++AG 
Sbjct: 364 HEIRTPMNGVIGMTTLLADTH---LNPEQTDYVGNIKRSAESLLMLINDLLDHSKIEAGK 420

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILS 696
           ++L+   + L  L+ +V +     + E NI ++   DGK L  + AD  RL QI   ++ 
Sbjct: 421 IRLDPQPLDLQFLVEDVLEMFKPTVAEKNIGLECRFDGKNLWHYRADAGRLRQILVNLMG 480

Query: 697 NAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           NA+ F+ KG  V L+ +           +F VK+ G  + E   +S+F ++       + 
Sbjct: 481 NAVKFTEKG-FVRLEVSSRGDKDGKTALLFEVKDTGQGLQEHEKRSLFQKYFQAKAGMKF 539

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            G GLGLSI +  ++L GG + + S     +    
Sbjct: 540 GGTGLGLSICKQLVDLMGGDIGVESVPGVGSNFWF 574



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 62/455 (13%), Positives = 146/455 (32%), Gaps = 51/455 (11%)

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
           V  T     ++ E       A  R L +    ++L     +   L+  ++    L  +  
Sbjct: 53  VLRTTEQILVRAE------AAQDRFL-VSRQPTDLQSYNSEITALNGQLARMSQLVRNKP 105

Query: 204 FLVWHRDQAGDILWAN--ISYKKNTETEGIVFQKAIGESRKLFKE---EIKKRMISSSAL 258
                R+ A  +   +   ++ +   T+ +  Q+   ++ +   +   +I+ ++I   A 
Sbjct: 106 -----REHAMAVKLGHLIRAHIETANTQVMTPQRRPAQTEESLDKTRYQIRHQLIEMQAA 160

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----------- 307
                +   T E  N         L     A + I  S+ +   +Q              
Sbjct: 161 SAPAIKFKPTKEGQN--------FLLGLCAAIVLIIASRVLQRKEQHETRKAVEALQGKS 212

Query: 308 --TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                IL++++ A+ + DQN +   +N +   +    +  ++T+ S ++L  F ++  + 
Sbjct: 213 ILLDTILNSMSEALIVVDQNGWFTHYNAAAQRIIGSKIKEISTDSSVEQLGFFNQAEGRP 272

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----GGTIWMFENLT 420
             +     ++          E        P G  + +             G + +F++++
Sbjct: 273 FTRKELPLYRALSGDRVDDLEIFVQNSEHPEGIYISLSSRPLNDIDGGISGALIVFKDIS 332

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI----KLSNPAFRSLWKTEENRLSP 476
            +  +E ++    +   E     S+ +A    + R      +      +       +   
Sbjct: 333 RRKMVEQEWIRAREAALEASQKKSDFLAAMSHEIRTPMNGVIGMTTLLADTHLNPEQTDY 392

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ----GTLELLSDSVLEYSIIP 532
             +I+  A +     N+        A     D +   LQ      LE+   +V E +I  
Sbjct: 393 VGNIKRSAESLLMLINDLLDHSKIEAGKIRLDPQPLDLQFLVEDVLEMFKPTVAEKNIGL 452

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                    +    D+ R  + L        K  E
Sbjct: 453 ECRFDGKNLWHYRADAGRLRQILVNLMGNAVKFTE 487


>gi|37679341|ref|NP_933950.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198084|dbj|BAC93921.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 718

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 92/415 (22%), Positives = 169/415 (40%), Gaps = 28/415 (6%)

Query: 398 QTLHVIVTSNPRGGT-IWMFENL--TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
               +  +   +GG  +W+ E +      D  T+    ++         + G+  F P  
Sbjct: 78  THWTLSASPRTQGGFDLWLQEAVCDDALRDENTRLRRDIERLDFAAQGANLGIWDFNPST 137

Query: 455 RIKLSNPAFRSLWKTEENRLSPGT----HIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                N  + +  K E N L         I N     S   +  D  +    I    D E
Sbjct: 138 GCIFGNKTWATQKKLEPNHLFADDALFSEIINGIEKWSEIVHPDDVAETTDKIQAHLDGE 197

Query: 511 RKSLQGTLELLSD-----------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            +       +               V E     +P  +     V++    R +++L+E  
Sbjct: 198 TELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVP-VRMNGIHVDIDKLKRLQQSLSETK 256

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +    A+  K+ F+ ++S+ELR+PL  ++G+T L+K  +   L +K  +Y+E I+ S   
Sbjct: 257 DKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQR--LTAKHHEYLEIINRSGEH 314

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+ND+LD++ +DAG   +        ++  E+   +  K  +  + +    +  +  
Sbjct: 315 LLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPH 374

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPED 733
           FV  D  +  Q+   +L NA+ F+ +G  V L  A +          F V ++G  I E+
Sbjct: 375 FVLGDVVKTRQVLINLLGNAIKFTYRG-NVRLNIASEALQNGQHKVTFEVSDSGIGISEE 433

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + VF  F        + G GLGLSI + F+ L GG + + S     +T +  +
Sbjct: 434 NQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKSELHRGSTFSFSL 488


>gi|323704003|ref|ZP_08115626.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531032|gb|EGB20948.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 498

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 123/241 (51%), Gaps = 3/241 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +K   LR+ DE +  FV  VS+ELR+PLT I G+T+ L    +     K+ +Y+  
Sbjct: 249 KELNDKINLLRQIDETRRDFVASVSHELRTPLTIIQGYTEALLDEVV-ETPEKKEEYLHS 307

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L  LVND+LDL  ++ G +KLN   + L DL + V Q +     E  + +K+ 
Sbjct: 308 ILEETLRLRRLVNDLLDLRQIETGQVKLNKQAVDLADLFSAVLQKMEGLFREKQVDLKLA 367

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              K      D  R+ Q+   ++ NA+  +  G  +++K    + +    V ++G  IP+
Sbjct: 368 LPEKPVVAEVDPDRIGQVLINLVDNALRATPGGGRILVKLMVSDNEITVKVTDSGPGIPK 427

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  K ++++F        R   G GLGL+IV+  + +HGG +++ S     TT +  +P 
Sbjct: 428 EEQKLIWHKFYKIDKSRSRSGGGTGLGLAIVKQLVEIHGGRITLDSQPGQGTTFSFTLPM 487

Query: 791 K 791
           +
Sbjct: 488 Q 488


>gi|270296516|ref|ZP_06202716.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273920|gb|EFA19782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 867

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 107/502 (21%), Positives = 205/502 (40%), Gaps = 23/502 (4%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + +Q      I  ++   +  +D +  + F NR  +++  +      +     ++   +
Sbjct: 373 RLVEQRDEFDNIFCSIRDGLITYDTDLRIHFVNRPLLQMLGLSSETYTSRFYEGQMAGSI 432

Query: 360 RSANKLPEQLNWKTWKE--------NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
                  E +     K+        +I       E H+ T+   +G+ + +        G
Sbjct: 433 FRIYMNGENILQDLLKKVRTGKRPISIPEKAFMQENHQGTYFPVSGEVVPIFANEK-MTG 491

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +  N++ +      +N  V+         +  +  F   G +       R    T++
Sbjct: 492 MAIVCRNISEEEMQRRFFNMAVEESSIYPWQYNMHMNRFHFPGGLL------RRFGYTDD 545

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFA--AIITSFDDERKSLQGTLELLSDSVLEYS 529
             L     +  +       +   +   +     I +      KS  G+ E        Y 
Sbjct: 546 TDLLARDEMDTLIHPEDLLHTRRNFDAILLDNEINSRMSFRLKSADGSYEWWEFRSTAYD 605

Query: 530 IIPLPNAQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + +     +L         +  E AL    +   +AD++K++F+ ++S+E+R+PL  I+
Sbjct: 606 GLTVDTPYMVLGVCQSIQRYKDTEEALIAARDRALQADKLKSAFLANMSHEIRTPLNAIV 665

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLLK     S   +  Q+VE I+ + T+LL L+NDILDL+ +++G M   +    L 
Sbjct: 666 GFSDLLKDLDAFS-PEEVKQFVETININCTLLLALINDILDLSRIESGTMDFKFGAFNLA 724

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            ++ EV +S    M   ++ +++ I +G+    + D  RL Q+ + +++NA  F+  GS 
Sbjct: 725 FIMQEVHESQRLSMP-RDVELRIEIPEGEDKLVITDSVRLKQVVNNLINNAKKFTVTGSI 783

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
                    G     V++ GS I ED  K +F RF       Q  G GLGLSI ++ ++ 
Sbjct: 784 TFGYVTNREGYTTIFVEDTGSGISEDAQKHIFERFYKEDSFTQ--GAGLGLSICQTIVDR 841

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
             G +S+SS     T     IP
Sbjct: 842 LHGSISVSSELGKGTRFEVVIP 863


>gi|256829363|ref|YP_003158091.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578539|gb|ACU89675.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 788

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 98/457 (21%), Positives = 188/457 (41%), Gaps = 20/457 (4%)

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD----TWHLPNGQTLHV 402
           A     D +L+  R+A ++  + +W+   E +    +  E  ++       L + Q    
Sbjct: 192 AARAVLDPVLDLSRAATEI-SRGDWQGLPEPLARKDEIGELSRNFVAMARRLRDSQADLT 250

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              ++ R   I +   +T +V +E              D     +        +   N  
Sbjct: 251 RQAASLRESNIHLEAQITERVRVEHDLRKATTSFMGIFDSSPSVLIAVDCGCVVAHWNRT 310

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            R+    E  ++        +     +     D         T+    R+S +   E  +
Sbjct: 311 ARTWVGLEPEQVIGLP----LEQALPQLAWLVDTVRRSMDEATTLSLTRQSYEQAEERRT 366

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             +L   +I       ++   +VT  +R E  L    ++   A+E K+ F+ ++S+ELR+
Sbjct: 367 VDILVSPLISDEVYGAVIRLDDVTAQIRMEEGLIAAKKSAESANEAKSEFLANMSHELRT 426

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P + I+G   LL+ +    L+ +Q +YV     +S     L+ D+LD++ ++AG + ++ 
Sbjct: 427 PFSGIMGMMRLLQGT---GLDDEQRRYVCLAIKASDRFTRLLTDLLDISRIEAGKLDIHE 483

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
                +DL + V +  A    E  I ++   D  + +  V D  R+ QI   ++ NA+ F
Sbjct: 484 QEFSTSDLHDSVMEIFALASQEKGISLEFFIDPSVPARLVGDEMRVRQILFNLVGNAIKF 543

Query: 702 SSKG----STVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGV 754
           + KG      ++L   +      +F+V + G  IP DM   +F  FV    A     +G 
Sbjct: 544 TEKGCVCVEIILLSPVKGADLRVLFTVSDTGIGIPVDMLSGIFGSFVQVDGASSRAFQGA 603

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGL+IV+  + L GG +   S +   T ++  +P K
Sbjct: 604 GLGLAIVKRLVKLMGGQIFADSIEGEGTNMHVELPFK 640


>gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1]
 gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1]
          Length = 1689

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 193/505 (38%), Gaps = 33/505 (6%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--LAFLATNPSNDEL 355
               +   +   + +  ++  A  I D+   ++  N +   L  ++   A + T+ +   L
Sbjct: 694  AAQLESSMNKFHALFDSVMDACVIIDKRGVIKECNAALQTLLGVEDKTALVGTSLTQFHL 753

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             +    +     Q      K+ +   +++  T      +P   TL  I  +  R   +  
Sbjct: 754  ADTFMGSAVQIAQSVEDVLKQGLLK-FEADITDSQGQSIPAEVTLKSIELNTERF-VLAT 811

Query: 416  FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            + NL  +  ++        +    +     GV V   +G  +  N     +   E     
Sbjct: 812  YHNLAERRLVDRLIRHERNLLKNVLGMSPIGVWVC-VNGTCRYVNAQMTLMTGLEVEH-- 868

Query: 476  PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP- 534
                     A    +    D W     +  + + E  + +  L+     +L+      P 
Sbjct: 869  ---------AVADIFLQPKDYWHYIREL--APEQECITFESKLKGYHGQILDVLFTAYPT 917

Query: 535  --NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              + Q        ++T     +  L         A+  K+ F+ ++S+E+R+P+  IIG 
Sbjct: 918  FYDGQHANLCWALDITQEKAIQAELASAKLQADAANRAKSDFLANMSHEIRTPMNAIIGM 977

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + L   +    L  K+  Y+  +  ++  LLN++NDILD + ++A  + + +    L+++
Sbjct: 978  SYLALQT---DLAEKRKDYIAKVHQAAGSLLNIINDILDFSKIEANKLTVEHIEFDLDEV 1034

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            L ++   I  K+ EN++R+           F+ D QRL QI     +NA+ FS KGS ++
Sbjct: 1035 LTQLNNVIGFKVEENSMRLIYDIATDCPRYFIGDPQRLGQILLNYCNNAVKFSPKGSDIL 1094

Query: 710  LKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
            L    +         F V ++G  IP D    +F+ F        R   G GLGL+I + 
Sbjct: 1095 LSCQAELDKQGATLTFCVADDGIGIPLDKQARLFHSFEQGDTSTSRKYGGTGLGLAICKR 1154

Query: 764  FINLHGGHVSISSSDEGVTTINCRI 788
               L  G V   S     +    R+
Sbjct: 1155 LSELMQGEVWCESELGQGSRFYLRL 1179



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 101/308 (32%), Gaps = 48/308 (15%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
           S  + + G  A  +L            +  L ++        +++   ++K+H+L     
Sbjct: 664 SSAMVILGLFACFIL-------WNYGLKRELLRRSRM----AAQLESSMNKFHALFDSVM 712

Query: 81  CLTIVWDGKDETPEIIGQLHQRIDI-------PQTDTDLLSFENWLKFHHYIKLSKATEK 133
              ++ D +    E    L   + +         + T     + ++     ++++++ E 
Sbjct: 713 DACVIIDKRGVIKECNAALQTLLGVEDKTALVGTSLTQFHLADTFMG--SAVQIAQSVED 770

Query: 134 LRKEGQ-SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY------SELAETTLKCK 186
           + K+G   F+         +I  E         L+ + L+           LAE  L  +
Sbjct: 771 VLKQGLLKFEADITDSQGQSIPAE-------VTLKSIELNTERFVLATYHNLAERRLVDR 823

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
            + +  ++ K +       VW     G   + N    + T   G+  + A+     +F +
Sbjct: 824 LIRHERNLLKNVLGMSPIGVWVC-VNGTCRYVNA---QMTLMTGLEVEHAVA---DIFLQ 876

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNN-KSYKIVRVLNSFGEAG------IAIDVSKEI 299
                        +  C T  +   G + +   ++         G       A+D+++E 
Sbjct: 877 PKDYWHYIRELAPEQECITFESKLKGYHGQILDVLFTAYPTFYDGQHANLCWALDITQEK 936

Query: 300 TVNDQLTH 307
            +  +L  
Sbjct: 937 AIQAELAS 944


>gi|322711971|gb|EFZ03544.1| putative histidine kinase HHK6p [Metarhizium anisopliae ARSEF 23]
          Length = 1403

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 112/678 (16%), Positives = 237/678 (34%), Gaps = 91/678 (13%)

Query: 197  VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG----ESRKLFKEEIKKRM 252
             L D+    +    + G +++ N + ++    +  +   A G       +L+ E   +++
Sbjct: 377  ALLDNTQMPILAIWKDGSVIFPNKAARQLQSLDADLDNCADGLDLLRKWELWDESFTRKL 436

Query: 253  ISS-------SALEKNFCETVSTLEH--GNNKSYKIV------RVLNSFGEAGIA-IDVS 296
              S          E  F      L    G    + ++       V   F  A +   DV+
Sbjct: 437  DVSEYPISILLRTEFPFASMRVGLVDRDGKKLIHDVLGEAIRDDVTGEFLAAVVTGRDVT 496

Query: 297  KEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF------ 345
                   Q+    +     I   +   +     +    F N  +     +          
Sbjct: 497  VITEQITQIKERDDERFKLICDTMPQLVWTASPDGLHDFFNTRWYSYTGLTPEECLGMEW 556

Query: 346  -LATNPSN-DELLEFLRSANKLPEQL-----------NWKTWKENIFSVYKSSETHKDTW 392
             +  +P +  E L   + + +  E              W+ +     +V      + + W
Sbjct: 557  QMPFHPDDRHEALTRWKRSLETGEPFVTEYRCRSKEGEWRWFLGRALAVRNKDSGNIEKW 616

Query: 393  HLPNGQTLHVIVT--SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
                     ++    +N          ++   ++ +       +     I H    +   
Sbjct: 617  FGKTNCRSLLVGEHGANANHRHTGTCTDVHESIETKFDAKRTRQQLLSVIAHSQVTIFTV 676

Query: 451  GPDGRI------KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
                R+       + N  +  +       +    H   +         E +  D F   I
Sbjct: 677  DTSRRVNMLEGALIWNHTYEDVHDPSRWYIGENMH--TVFNRLVDQLPEGEQLD-FLQPI 733

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---------------TFVNVTDSV 549
                + R +       L D       +P+   +T                          
Sbjct: 734  EDILEGRTTEDVKQHGLDDRWYRTRFLPMYGKKTHDGKTTSDSTIEGVIGVIMDVTELRD 793

Query: 550  RAERALTEKNE---------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            R E  L +  E         A ++A+ +K+ F+ ++S+E+R+P+T ++G  +LL      
Sbjct: 794  REEALLKQSREKRKAVANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLSHM--- 850

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             L+ +Q  Y++ I +S+T LL ++NDILD + V++G + +      L+ ++ EV + +  
Sbjct: 851  DLDEEQRDYIDNIQSSATSLLTVINDILDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRF 910

Query: 661  KMHENNIRIKVISDGKL---GSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAA 713
             +   N+  +      +      + D  R+ QI + +L+N++ F+++G    S       
Sbjct: 911  AVERKNLDFQSDIGSDIENDMVVIGDPGRVRQIITNLLTNSIKFTNQGYVRFSVTTESET 970

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             D+ +  F V++ G  I ED+ K +F  F        RR  G GLGL+I ++ ++L  G 
Sbjct: 971  SDSINIKFVVEDTGIGIQEDVRKRLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGR 1030

Query: 772  VSISSSDEGVTTINCRIP 789
            + + S+ +  T  +  IP
Sbjct: 1031 IILESTVDSGTKASFWIP 1048


>gi|47097090|ref|ZP_00234660.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498603|ref|ZP_03666952.1| sensor protein ResE [Listeria monocytogenes Finland 1988]
 gi|254827168|ref|ZP_05231855.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|254831452|ref|ZP_05236107.1| sensor protein ResE [Listeria monocytogenes 10403S]
 gi|254899356|ref|ZP_05259280.1| sensor protein ResE [Listeria monocytogenes J0161]
 gi|254912505|ref|ZP_05262517.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
 gi|254936832|ref|ZP_05268529.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284802392|ref|YP_003414257.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284995534|ref|YP_003417302.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|47014535|gb|EAL05498.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258599550|gb|EEW12875.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|258609428|gb|EEW22036.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284057954|gb|ADB68895.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284061001|gb|ADB71940.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|293590490|gb|EFF98824.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
          Length = 596

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 166/400 (41%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I    +   N++               E+K  Q   
Sbjct: 281 SNPPAEEFLHNWFFSPENTEKVL-IPVALNELLNDTL--------------EKKESQVGE 325

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +D      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 326 ITFADHTYVAILTLLYTGEHVRSIVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 435 QMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNA 494

Query: 699 MDFSSK---GSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  + K      VILK   D    + + +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYDGKVILKQTIDEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 555 AVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIITLPL 594



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 106/322 (32%), Gaps = 52/322 (16%)

Query: 284 NSFGEAGIAI-DVSKEI-----TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  GE G+A  D++K++      +  +      IL  +   +  F  ++ +   N    E
Sbjct: 228 DEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEE 287

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
              +   F +   +             +P  LN     E +    +  E+        + 
Sbjct: 288 F--LHNWFFSPENT---------EKVLIPVALN-----ELLNDTLEKKESQVGEITFADH 331

Query: 398 Q---TLHVIVTSNPRGGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHL 443
                L ++ T       + +  ++T +  LE            +  T + +     + +
Sbjct: 332 TYVAILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI 391

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY--YNESDGW---- 497
            +GVA    + R       F  +    +  L  G  + ++         +N+ D      
Sbjct: 392 IDGVAQSDEEVR------EFAQI--IYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443

Query: 498 -DLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             L   +I++FD   K     L L  ++  LEYS  P    Q ++  +        +   
Sbjct: 444 APLLRKVISNFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGY 503

Query: 556 TEKNEALRKADEIKNSFVQHVS 577
             K    +  DE +++ V  VS
Sbjct: 504 DGKVILKQTIDEARSNLVITVS 525


>gi|261416190|ref|YP_003249873.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372646|gb|ACX75391.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327682|gb|ADL26883.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 794

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 92/536 (17%), Positives = 211/536 (39%), Gaps = 41/536 (7%)

Query: 290 GIAIDVSKEITVN---DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           G   DV++++       +L    +I + L      FD   Y+  ++ SF+E     +   
Sbjct: 118 GCCTDVTEQVEFKMHVRELDQYSDIANTLGDG---FDNIYYVDINDNSFIEFNAQGVVKT 174

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTW--------KENIFSVYKSSETHKDTWHLP-NG 397
               +  +  E    A  L + +  + W        KE +    ++      ++    +G
Sbjct: 175 LDAKNCKDFFEGFELA--LEKVVFREDWAAVKDFVNKEKMLHGLENDRAVSVSFRFSFDG 232

Query: 398 QTLHVIV----TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE--GVAVFG 451
           + ++  +    T +     +   EN+  +   + +   +       I  LS+  G  V+ 
Sbjct: 233 RLVYYRLKAAKTPDSENHIVVTLENVDEEESAKAERKAIANRDMAVISGLSDDFGCVVYV 292

Query: 452 PDGRIKLS----NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA--AIIT 505
               +       +P F  +        + G  ++ +  T     +            ++ 
Sbjct: 293 DYETLSEVHYRFDPMFDEMVPGWSKIDNFGERLKVLVDTVVHPSDRESFCAATEPTKVLD 352

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRK 564
             D E          +    + Y I  + +       +    SV AE      N E    
Sbjct: 353 MVDREHMYFVNFRLQVGGEDIYYQIKFVKDENFKNHVIAGFHSVDAETKREMANLEKAEL 412

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K++F+ ++S+++R+PL  +IGFTD+   +      +K    +     SS  LL+L+
Sbjct: 413 ANKAKSAFLFNMSHDIRTPLNAMIGFTDMAVKNIDDK--AKALDCLGKSKLSSEHLLSLI 470

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVAD 683
           ND+LD++ +++G ++L+ + + L++   +    + +   + N+  +    D +      D
Sbjct: 471 NDVLDMSRIESGKVELDLNPVNLDENGEDCVPMLRSLAEKKNVHFEFAHHDIQNRYVYVD 530

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKS 737
             RL Q+   ++SNA+ ++  G +V +   +   +      +   +K+ G  +  +  + 
Sbjct: 531 FLRLNQVIINVVSNAVKYTPSGGSVTVDITQIPSEREGYGLYQIVIKDTGIGMSAEYQQH 590

Query: 738 VFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F+ F         +++G GLGL+I +  +++  G + + S     +    RIP +
Sbjct: 591 LFDEFSRERTSTVSKQQGTGLGLAITKRIVDMMEGSIDVESKVGEGSKFTIRIPMR 646


>gi|154252838|ref|YP_001413662.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
 gi|154156788|gb|ABS64005.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
          Length = 539

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 152/367 (41%), Gaps = 11/367 (2%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             +  +  E +D L  G  +FGPD  I LSN      +      L  G           +
Sbjct: 9   QEMAAIVREAVDRLPGGFVIFGPDHEILLSNAQNERDFPFTNEALRQGKTYLEATHFAVK 68

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQG-TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                   ++  ++  +  D     +   L     +V++   IPL     +    +VT  
Sbjct: 69  KVAPDLPDEVALSVARNIHDTLAKGEPVELRTHLGTVMQVIEIPLSFGGWVAVGADVTAL 128

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ER L +  +    A+E K++F+ ++S+E+R+PL  I+G   L+ +   G L   Q  
Sbjct: 129 RERERELKKSRKQAEAANEAKSAFLANISHEIRTPLNGILGMAQLMAS---GDLTPGQKD 185

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E I  S   L+ L+ND+LDL+ ++AG   ++     L  LL  +++  A +  E  + 
Sbjct: 186 QIETILDSGKTLMALLNDVLDLSKIEAGRFDISPIDNDLGQLLRRMEKLWAPRASEKGLV 245

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSV 723
           + +  +  +   +  D  R+ Q  S ++SNA+ F+ +GS  +    + A     D +  +
Sbjct: 246 LTLDINSAMPELLRFDPIRVRQCVSNLVSNAIKFTERGSVRVAARCVPAGEGEFDVLVEI 305

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  +  +    +F  F        RR  G GLGLSI      L GG V   S +   
Sbjct: 306 SDTGIGMSGETLGKLFAPFTQADASTSRRFGGTGLGLSISRKLAQLMGGDVVAESEEGRG 365

Query: 782 TTINCRI 788
           +      
Sbjct: 366 SLFTLTF 372



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 5/140 (3%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL-- 359
            +      E +  L     IF  +  +   N      +      L    +  E   F   
Sbjct: 9   QEMAAIVREAVDRLPGGFVIFGPDHEILLSNAQNERDFPFTNEALRQGKTYLEATHFAVK 68

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           + A  LP+++     + NI       E  +   HL  G  + VI      GG + +  ++
Sbjct: 69  KVAPDLPDEVALSVAR-NIHDTLAKGEPVELRTHL--GTVMQVIEIPLSFGGWVAVGADV 125

Query: 420 TVQVDLETKYNTLVKVQGET 439
           T   + E +     K     
Sbjct: 126 TALRERERELKKSRKQAEAA 145


>gi|56964475|ref|YP_176206.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56910718|dbj|BAD65245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 590

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 145/371 (39%), Gaps = 22/371 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L  ++          IDH+   +      G + L N     +++ + +      +    
Sbjct: 236 QLSRRHQAQQDRMAALIDHMGSALLFMNVRGDVVLLNQTTEQVFEVDSSDWLSKPYY--- 292

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                 +   S     F  ++   + +++SL    +  S  V +    P+      L  V
Sbjct: 293 ------HVFPSQPLIQFVQLVYMTEKKQRSLIEWTKHFSTRVYDVYGAPVMADSGRLRGV 346

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +      E+          K ++++  FV +VS+EL++P+T+I GF + L    +    
Sbjct: 347 TLVMHDITEQK---------KLEQVRKDFVANVSHELKTPVTSIKGFAETLLDGAIDD-P 396

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               Q+ E I   S  L  L+ D+L+L+ ++    KL+   + L D+  +V + +  K  
Sbjct: 397 VLSKQFTEIIWKESDRLQMLIVDLLELSKIENAQFKLDLEDMSLKDITEDVFELVRGKAE 456

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  + + +   G       D QRL Q+   ++SNA+ ++  G  V +         +  V
Sbjct: 457 EKGMHLHIQEQGS-SVIEGDWQRLKQVVLNLVSNAISYTPSGGHVTVALKEQKDAVVLKV 515

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I       +F RF        R   G GLGL+IV+     H   + + S +   
Sbjct: 516 QDTGIGIDPKETLRIFERFYRVDRARSRNSGGTGLGLAIVKHLAEAHHAKIEVQSEEGKG 575

Query: 782 TTINCRIPSKE 792
           T  +   P K+
Sbjct: 576 TEFSLTFPKKQ 586


>gi|156743113|ref|YP_001433242.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234441|gb|ABU59224.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 911

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 162/386 (41%), Gaps = 28/386 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           + +++ +    V      +  LS+GV V    G +  +N A   + +     L       
Sbjct: 536 RYEMQQRQEQAVSQSTAILQSLSDGVIVCDQSGSVLTANLAAEKILERPIEELVTWNLED 595

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +     R  +E    DL        D  R     T   +    +  ++ P+ +++  L 
Sbjct: 596 LLRRLLGRRVDELSLNDLLRNPWD--DQHRPRTLSTTFQIGPRTINITLDPVISSKETLI 653

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                   R             ++D +K  F+  VS+ELR+P+T+I GFT LL    LG 
Sbjct: 654 GAVAVFRDRTRE---------VESDRLKTEFIGTVSHELRTPMTSIKGFTQLLAMGGLGP 704

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN  Q +++  I +++  ++ ++ND+LD+  ++ G ++L    + + + L+ V   +  K
Sbjct: 705 LNETQKEFLGIIQSNAERMIAIINDLLDITKIETGSVELEIRPLHVAETLSTVMLDLQPK 764

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------- 713
           + +    + +     L    AD +R  QI   I+SNA+ ++ +G ++ ++A         
Sbjct: 765 IQDRQQHLSLSIPAGLPLVRADARRFNQILFNIVSNAVKYTPRGGSITVEAREVTADAVP 824

Query: 714 -------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
                  R        V++ G  I  +    ++ RF    +  + +  G GLGLS+V+  
Sbjct: 825 DEERDGLRPGRYVQIDVRDTGVGIAPEDLPRIWERFYRTENPLKVEAGGTGLGLSLVKPL 884

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           I L GG + + S     +  +  IP+
Sbjct: 885 IRLLGGRIWVESCINEGSVFSFVIPA 910


>gi|239908296|ref|YP_002955037.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
            magneticus RS-1]
 gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
            magneticus RS-1]
          Length = 1516

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 166/404 (41%), Gaps = 15/404 (3%)

Query: 396  NGQTLHVIVTS--NPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            N + LH   T      G   W  +  ++T +     + +   +     ++     +   G
Sbjct: 965  NEKWLHTRCTPKTLHDGTVFWNGVSVDITERKIAAAQVSKAAEFYLTILNRAPALIWRAG 1024

Query: 452  PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             D +    N  + S    + ++         +     ++  ++      A      +   
Sbjct: 1025 LDAKCDWFNATWLSFTGRDISQELGDGWADGVHPEDLQHCLDTYKKSFIARQFFEMEYRM 1084

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            +   G    + D    +  I       +    ++TD  +A   L        +A+  K+ 
Sbjct: 1085 RRHDGEYRWIVDFGCPFKNINGEFGGYIGFCYDITDRRQATLDLELARFNAEEANRTKSE 1144

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+E+R+PL  ++G   LL+++   SL+ +Q +Y      S   L  L++DILDL+
Sbjct: 1145 FLANMSHEIRTPLNGVLGMLQLLQST---SLDVEQKEYSIAAVDSCIRLTRLLSDILDLS 1201

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
             V+AG + +      L++ +N V +   T+  E+ I +    D  +    + D  RL Q+
Sbjct: 1202 RVEAGKLGIQAVPFDLSETVNVVNELFKTQAIESGITLDFHIDQDIPKRLIGDAPRLQQV 1261

Query: 691  FSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSN 745
               ++ NA+ F+  G   +      + D      +FS+ + G  IP D    +F  F   
Sbjct: 1262 LCNLVGNALKFTHAGKIAVSSHLLPSSDPKRISLMFSISDTGIGIPHDKIDLLFTPFTQV 1321

Query: 746  AH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +     + +G GLGLSI +  + L GG++SISS     TT+N  
Sbjct: 1322 SEGYTRRHQGAGLGLSICKHLVTLMGGNISISSVLGQGTTVNFS 1365



 Score = 41.5 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 30/170 (17%)

Query: 172  DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNT 226
            +G+  ++ E  +   ++S     +  + +    L+W         W N ++     +  +
Sbjct: 986  NGVSVDITERKIAAAQVSKAAEFYLTILNRAPALIWRAGLDAKCDWFNATWLSFTGRDIS 1045

Query: 227  ETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
            +  G  +   +  E  +   +  KK  I+    E  +         G  +   IV     
Sbjct: 1046 QELGDGWADGVHPEDLQHCLDTYKKSFIARQFFEMEYRMRRH---DGEYRW--IVDFGCP 1100

Query: 286  F--------GEAGIAIDVSKEIT-----------VNDQLTHTYEILHNLT 316
            F        G  G   D++                 +      E L N++
Sbjct: 1101 FKNINGEFGGYIGFCYDITDRRQATLDLELARFNAEEANRTKSEFLANMS 1150


>gi|194364225|ref|YP_002026835.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347029|gb|ACF50152.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 662

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 101/511 (19%), Positives = 189/511 (36%), Gaps = 58/511 (11%)

Query: 311 ILHNLTVAI----AIFDQNRYLQF----HNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           +L  +         +FD +R + +     N +F     +  A               R  
Sbjct: 14  VLERINAGFCVIQVLFDGDRAVDYRFIEVNDAFERHTGLKDA---------------RGQ 58

Query: 363 NKLP-EQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGG---TIWMFE 417
                E  + + W      V +S    + +      G++  V      R G      +F 
Sbjct: 59  RMSALEPHHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFF 118

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +  +E +            D L   V V    G  +  N AF   +  +E      
Sbjct: 119 DITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDET----- 173

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS----DSVLEYSIIP- 532
                +     R     D   +F   +      ++S+   +           LE +  P 
Sbjct: 174 ----RVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPR 229

Query: 533 ---------LPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELR 581
                    L  +   +T     +  R E  ++      A      +K+ F+  +S+ELR
Sbjct: 230 FSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELR 289

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I+G+++LL         S   + +  I+ S+     L++D+LDL+++  G ++L 
Sbjct: 290 TPLTTILGWSELLLQRV--DNTSPLYKGLGVIANSAGAQKRLISDMLDLSSMLLGKVQLE 347

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L  +L E   +         + + +    +    + D  RL Q+F  +LSNA+ F
Sbjct: 348 VEVLDLCGVLGEAIGAQELVAEGKALDVHLQLPDRPSLVLGDATRLQQVFWNLLSNAIKF 407

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +     + +    D   ++ +V++ G  I  +    +F+RF        RR  G+GLGL+
Sbjct: 408 TPAEGRIDVALQADGNHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLA 467

Query: 760 IVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           IV+  + LHGG V+ +S       T   R+P
Sbjct: 468 IVQQLVELHGGTVTAASEGHGHGATFTVRLP 498



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 73/223 (32%), Gaps = 32/223 (14%)

Query: 119 LKFHHYIKLSKATEKLRKEGQS--FDLVAETQNDCAIKIE----GRVSGSCAFLRILSLD 172
           L+ HH     +   ++ + G+   F++ A      +  ++    GR       +    + 
Sbjct: 63  LEPHHEEDWFRIYGEVARSGRPAQFEMEARAL-GRSFAVDAVRVGRPGEDKVGILFFDIT 121

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
                  E      +       F  L D L   VW  D+ G   + N ++ +    +   
Sbjct: 122 ARKQMEVELGESEAR-------FSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETR 174

Query: 233 FQKAIGESR------KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI------V 280
             + +           +F+ E+++ + +  ++             G  +  ++       
Sbjct: 175 VPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARR---ADGQWRWLEMNARPRFS 231

Query: 281 RVLNSFGEAGIAIDVSKEITV---NDQLTHTYEILHNLTVAIA 320
           R+    G AG + DV++   +    ++L  +     +    +A
Sbjct: 232 RMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMA 274



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 83/251 (33%), Gaps = 37/251 (14%)

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           R      +  N +++++T  +    Q+         +E+  +     +   +     +  
Sbjct: 33  RAVDYRFIEVNDAFERHTGLKDARGQRMSA-LEPHHEEDWFRIYGEVARSGRPAQFEMEA 91

Query: 269 LEHGNNKSYKIVRV--LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IF 322
              G + +   VRV          +  D++    +  +L  +      L   +     + 
Sbjct: 92  RALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVL 151

Query: 323 DQNRYLQFHNRSFVELWEIDLAFL-------ATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           D+  + +F N +F E +  D   +         +P +  + E+        E       +
Sbjct: 152 DERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEY--------ELQEALKAQ 203

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-------NLTVQVDLETK 428
            ++ ++ ++           +GQ   + + + PR   +  F        ++T + ++E  
Sbjct: 204 RSMHALVRA--------RRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELA 255

Query: 429 YNTLVKVQGET 439
              L++ +   
Sbjct: 256 REELLQSERAA 266


>gi|306843027|ref|ZP_07475653.1| PAS domain S-box-containing protein [Brucella sp. BO2]
 gi|306286784|gb|EFM58327.1| PAS domain S-box-containing protein [Brucella sp. BO2]
          Length = 1038

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 126/730 (17%), Positives = 259/730 (35%), Gaps = 57/730 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERAARPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND--QLTHTYEI--LHNLTV 317
              +                    S   +   ++ +  +      +L    E   L NL V
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRPAPELIQPDETALLANLPV 550

Query: 318  AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
             + I   +  + + N++ +++   +   L        + + L ++     +        +
Sbjct: 551  PVIIHSGDA-IHYVNQALLDITGYES--LDDIRGAGGV-DVLFNSESDDGETRQSMVLRH 606

Query: 378  IFSVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
                 +  + H +      G+ L      V     P    +    +   +  LE     L
Sbjct: 607  ADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAASDDEEKQALEAHVEEL 666

Query: 433  VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                   +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+   
Sbjct: 667  ----KTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAA 721

Query: 493  ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRA 551
                  L    + S  ++ + + G         L  +I  LP+ +       ++T   R 
Sbjct: 722  MDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRT 781

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYV 610
            E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+
Sbjct: 782  EEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYL 841

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+
Sbjct: 842  RDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIR 901

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729
                  L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  
Sbjct: 902  SSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIG 961

Query: 730  IPEDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + +   +     F            +A   +  G GLGL + ++ +  +    +I S+  
Sbjct: 962  MSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPG 1021

Query: 780  GVTTINCRIP 789
              T +    P
Sbjct: 1022 QGTVVEIVFP 1031


>gi|110833303|ref|YP_692162.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
 gi|110646414|emb|CAL15890.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
          Length = 813

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 10/245 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+ ++E+   L  A   ++ F+  +S+E+R+PL  IIG  D+LK S    LN +Q   +
Sbjct: 408 LEQRVSERTSELNAALNARSEFLAVMSHEIRTPLNGIIGTVDMLKGS---PLNDEQRHNL 464

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LLNL+NDILD + ++AG M +  ++  L +LLNE       K   ++  + 
Sbjct: 465 NVIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLLNESLTLFQHKAQIHSNALT 524

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNN 726
           +     +    + D  RL QI   ++SNA+ F+  G T+ ++A RD   +    F V+++
Sbjct: 525 LDVAPNVSERCLGDPVRLRQILVNLISNAVKFTDNG-TITVRAQRDPANSDYLYFEVQDS 583

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G+ I E+  + +F+ F        RR  G GLGL+I    + + GG + + S  +  +  
Sbjct: 584 GTGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSKPKQGSRF 643

Query: 785 NCRIP 789
             R+P
Sbjct: 644 WFRLP 648


>gi|27366394|ref|NP_761922.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362595|gb|AAO11449.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 718

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 92/415 (22%), Positives = 169/415 (40%), Gaps = 28/415 (6%)

Query: 398 QTLHVIVTSNPRGGT-IWMFENL--TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
               +  +   +GG  +W+ E +      D  T+    ++         + G+  F P  
Sbjct: 78  THWTLSASPRTQGGFDLWLQEAVCDDALRDENTRLRRDIERLDFAAQGANLGIWDFNPST 137

Query: 455 RIKLSNPAFRSLWKTEENRLSPGT----HIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                N  + +  K E N L         I N     S   +  D  +    I    D E
Sbjct: 138 GCIFGNKTWATQKKLEPNHLFADDALFSEIINGIEKWSEIVHPDDVAETTDKIQAHLDGE 197

Query: 511 RKSLQGTLELLSD-----------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            +       +               V E     +P  +     V++    R +++L+E  
Sbjct: 198 TELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVP-VRMNGIHVDIDKLKRLQQSLSETK 256

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +    A+  K+ F+ ++S+ELR+PL  ++G+T L+K  +   L +K  +Y+E I+ S   
Sbjct: 257 DKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQR--LTAKHHEYLEIINRSGEH 314

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+ND+LD++ +DAG   +        ++  E+   +  K  +  + +    +  +  
Sbjct: 315 LLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPH 374

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPED 733
           FV  D  +  Q+   +L NA+ F+ +G  V L  A +          F V ++G  I E+
Sbjct: 375 FVLGDVVKTRQVLINLLGNAIKFTYRG-NVRLNIASEALQNGQHKVTFEVSDSGIGISEE 433

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + VF  F        + G GLGLSI + F+ L GG + + S     +T +  +
Sbjct: 434 NQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKSELHRGSTFSFSL 488


>gi|91203278|emb|CAJ72917.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 494

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 194/502 (38%), Gaps = 34/502 (6%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLR 360
              L+     + + + ++ + D    +Q+ N +FV++        +  NP        + 
Sbjct: 14  KQHLSMLIHSIEHGSRSVIVTDVKGCIQYVNPAFVKITGYAKEEAIGKNP-------RIL 66

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGT---I 413
            + + P+    + W+  +       E H        G+   V  T +P     G     +
Sbjct: 67  KSGETPQGQYKQLWETIVSGNEWEGEFHN---RKKTGEYYWVFATISPMKNEEGAITHFV 123

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +   +T +   E ++N  VK       + ++ +      G ++L NPA   ++  ++  
Sbjct: 124 AIQREITERKRKEVRFNAFVK-------NTADALIAIDEQGVVELFNPAAEKMFGYKKEE 176

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +     I  +  +  + + +     L              L+   +  +   +E +I   
Sbjct: 177 VVGENVIMLMPESYRKKHEDGLKRYLNTGKARILGTGPIELEALRKDGTAFPIELTIGDA 236

Query: 534 PNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              +    +    ++T+   AE+ L    E L +++     F    S++L+ PL  I  +
Sbjct: 237 RLDEYFTFIGIIRDITERKWAEQKLIHSMEELSRSNAELQQFAYVASHDLQEPLRMITSY 296

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T LL+      L+S  ++Y+ +    +  +  L+ND+L  + V +     N+  +   ++
Sbjct: 297 TKLLERRYKDKLDSNANEYIAFAVDGAMRMQQLINDLLAYSRVTSRCR--NFEPVNCTEV 354

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVI 709
            N V +++   + E+   I       L   +AD  +L Q+F  ++ NA+ F       V 
Sbjct: 355 FNRVAKNLKIAIEESGAAIT---QDHLPVVMADPSQLTQLFQNLIGNALKFRGEAPPRVH 411

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           + A +   ++IFSV +NG  I       +F  F     +    G G+GLSI +  +  H 
Sbjct: 412 ISAEKKESEWIFSVSDNGIGIDPQYYDRIFIVFQRLHGKEDYPGSGIGLSICKKIVERHS 471

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + + S      T    +P +
Sbjct: 472 GRIWLKSEPGKGATFYFSLPVR 493


>gi|254504682|ref|ZP_05116833.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222440753|gb|EEE47432.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 140/290 (48%), Gaps = 9/290 (3%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             F+ ER + +    LL D   E   I      T+       +   A  AL        K
Sbjct: 12  RRFERERMARKEAERLLEDKSSELYEINQKLISTLGDLEAQVEERTA--ALKTAMSDAVK 69

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+E K+ F+ ++S+E+R+P+  +IG   LL  +   SL+  Q  Y   I  SS  LL ++
Sbjct: 70  ANEAKSQFLANISHEIRTPMNGVIGMATLLLDT---SLSDNQRHYATTIRESSDALLTII 126

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           NDILDL+ ++AG ++L+     L D+++ V + +A      ++ +      +L +  V D
Sbjct: 127 NDILDLSKLEAGRLELSNEEFQLADVIDGVLEILAPAAISRSLDLVSFLPMELQTSVVGD 186

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
             RL QI   +  NA+ F+ KG+  V +  A+ +G   F +++ G  IP+D   ++F++F
Sbjct: 187 AGRLRQILLNLAGNALKFTDKGTVAVRVSEAKSSGKVRFEIEDTGIGIPQDQLPTLFDKF 246

Query: 743 VSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           V        Q  G GLGL+I    I+L GG + + S +   +     +P 
Sbjct: 247 VQVDPSSSRQHGGTGLGLAITRQLISLMGGRIGVQSEEREGSLFWFELPL 296


>gi|320120642|gb|EFE27962.2| sensory box histidine kinase YycG [Filifactor alocis ATCC 35896]
          Length = 602

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 157/395 (39%), Gaps = 22/395 (5%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
              + SN   G +   F  LT ++     + ++        I+H+ +G+      G+I  
Sbjct: 222 RATIHSNDEIGQLATSFNYLTERLHKTLMEISSEQDKLNAIIEHMEDGLIAIDQQGKIIH 281

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N     + K  +  +    +   I        +        + +         +++   
Sbjct: 282 YN---IVVEKLLDISMENKQYFDQIFLPMQNNLSLKRIVQQNSEMNEGMKPSEFTIEINS 338

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +LS S   +S         ++ F ++T+  R               D ++  FV +VS+
Sbjct: 339 RILSVSSALFSDTSNTLTGYVVLFQDITEHERL--------------DHMRKEFVANVSH 384

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+T I  +++ L    L    +   +++E I   S  + +L+ D+L L+ +D    
Sbjct: 385 ELKTPITTIRTYSETLLDGALKD-PAIAKKFMEVIVKESDRMTSLIRDLLQLSHIDFKKE 443

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
             N+    +N L+ +    +       +  +     G+      D+ ++ Q+   ILSNA
Sbjct: 444 TWNFDYTDINTLIQDSIDKMELYYQTKHQTLVSNLLGQSRQIWVDKTKMEQVIINILSNA 503

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + ++ +   + L      G     +++NG  IP++  + +F+RF         Q+ G GL
Sbjct: 504 IKYTEENGKISLSLFVSEGILDIVIEDNGIGIPKEDVEHIFDRFYRVDKGRSRQQGGTGL 563

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI +  +  HGG +S+ S     T     +P +
Sbjct: 564 GLSIAKHIVEEHGGSISVRSDFGKGTVFTISLPIE 598


>gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 583

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 150/389 (38%), Gaps = 26/389 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +           I  L + V V    G     N  F        + L       ++   
Sbjct: 159 QRARRRNPDLLPLIHQLGDFVVVHDRSGTAWALNRHFEHHLGLPPDDLMGRGLFDHVHVL 218

Query: 487 CS----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----- 537
                 R   ++ G +  + I        + L            +  I    N       
Sbjct: 219 DRPAFLRAIADAAGGEGASNITIRLRGRGEDLSSVEPCF--RWFDVCINRFENGHAKKRE 276

Query: 538 ---------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +  + +++   R E+ L     A   A++ K+ F+ ++S+ELR+PL  II
Sbjct: 277 EAEADDQAMIIGVYRDISAMRRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNAII 336

Query: 589 GFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           GF+++L   +L   +  KQ +Y   I +S   LL++VN ILD++ + +G   L    IVL
Sbjct: 337 GFSEMLADPQLCPQDPLKQREYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPIVL 396

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             L+      +  +     I +  I        VAD+Q   QI   +LSNA+ F+ +   
Sbjct: 397 APLIASCCAMLRPQAEAKEIELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRRGR 456

Query: 708 VILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
           V +          D   +V++ G  I  D    +   F     R +R   G GLGLSIV 
Sbjct: 457 VTIAVDCVVDCLDDIQIAVQDTGIGISADDLTRLGEPFFQAMVRQERPHEGTGLGLSIVR 516

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + LHGG + I S  +  T++  R+P +
Sbjct: 517 GLVELHGGTLLIESEPDQGTSMIVRLPRE 545


>gi|304321015|ref|YP_003854658.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299917|gb|ADM09516.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 517

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/363 (24%), Positives = 159/363 (43%), Gaps = 13/363 (3%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           E +D L  G  ++ P   +   N   R         L  G  +  I     +        
Sbjct: 3   EALDCLPNGFVIYDPTLHLIYGNQVARDRNAQMFELLEAGVPLDQIVRRQLKLILPDLPP 62

Query: 498 DLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           D F      +    R  L       +    + +   + + + +   V++T     E+ L 
Sbjct: 63  DEFEESAEDYIYRLRTGLPVEFHTENGRTAQSNFFEMESGERVAVTVDITAIRANEQRLR 122

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISA 615
                   A++ K++F+ + S+E+R+PL  I+G T+ +LK      L ++  Q++  I  
Sbjct: 123 LARSEAEAANKTKSAFLANTSHEIRTPLNGILGLTEHVLKL----DLPTEARQHLNTIHD 178

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-D 674
           + T LL L+NDILDL+ ++AG  +L      L++ + +V++  +    +  + + V+   
Sbjct: 179 AGTTLLTLLNDILDLSKIEAGAFELAPDEKALSETVGKVERLWSGPAKQKGLSLDVVIGP 238

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSI 730
           G     +AD  RL Q  S ++SNA+ F+ +GS  + + A++          +V + G  I
Sbjct: 239 GVPEKVIADHHRLYQCLSNLVSNAIKFTEEGSVHIRVDASKPKAGQSVVTVAVSDTGPGI 298

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +D+   +F  F        R   G GLGLSIV+  ++L GG V + S     TT   R+
Sbjct: 299 SDDIKTQLFKPFTQADSSTSRTYGGTGLGLSIVQGLMDLMGGSVDLESKVGVGTTFRVRL 358

Query: 789 PSK 791
           P K
Sbjct: 359 PVK 361



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 2/142 (1%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             E L  L     I+D   +L + N+   +        L      D+++   +    LP+
Sbjct: 1   MLEALDCLPNGFVIYDPTLHLIYGNQVARDRNAQMFELLEAGVPLDQIVRR-QLKLILPD 59

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
               +  +     +Y+        +H  NG+T          G  + +  ++T     E 
Sbjct: 60  LPPDEFEESAEDYIYRLRTGLPVEFHTENGRTAQSNFFEMESGERVAVTVDITAIRANEQ 119

Query: 428 KYNTLVKVQGETIDHLSEGVAV 449
           +   L + + E  +        
Sbjct: 120 RLR-LARSEAEAANKTKSAFLA 140


>gi|163749758|ref|ZP_02157004.1| two-component hybrid sensor and regulator [Shewanella benthica
           KT99]
 gi|161330571|gb|EDQ01529.1| two-component hybrid sensor and regulator [Shewanella benthica
           KT99]
          Length = 1176

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/506 (19%), Positives = 190/506 (37%), Gaps = 45/506 (8%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------PSNDE------ 354
               IL        I D    +   N +   L+  D   L  +      PS++       
Sbjct: 243 RLSTILEAAVDGFIIIDTQGIIVQVNPAVGHLFGYDNNDLIGHNVSIFMPSHERHMQNDF 302

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L+ F+ S     +    +   ++        +       L +G  +            + 
Sbjct: 303 LMRFINSKRGGLQGKGRELVAQHKSGKLFPIDLSVSKM-LIDGDVM-----------LLG 350

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + ++L+     E +      +   T++   + +      GRI+  N A   L+     + 
Sbjct: 351 LVKDLSDIKRKEAEAKRTESILLATLEASQDALITIDITGRIQEFNEAASQLFGHSREQ- 409

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSII 531
           + G     +           +  ++F    T      K     + + +D     +E  +I
Sbjct: 410 ALGEIFEELIFVDIERKAFKEELEVFRK--TGCGPAIKKSVELMSIRADGTHFPVEMKMI 467

Query: 532 PLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           P+     +L      +V++ ++ E  L +  E      + K+ F+  +S+E+RSPL  ++
Sbjct: 468 PVQLGDEILLTAFLHDVSERMQYETELKQAKEQAELGSKAKSRFLATMSHEIRSPLNAVL 527

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L+  SK   LN  Q  Y      + T LL+ +NDILD + ++AG M L   +    
Sbjct: 528 GGVELMLDSK---LNKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLKNMSFSPA 584

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
            ++ +V Q +A K +E  + +    +  + + V  D QRL Q+   ++ NA+ FS  G  
Sbjct: 585 KMVAQVMQILAPKANEKGVNLATFINRNVPALVKGDAQRLRQVLHNLVDNAIKFS-SGGC 643

Query: 708 VILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
           + ++    +G         +V + G  I     K +F  F      H     G GLGL+I
Sbjct: 644 ISVEMWIPDGHHQEVQLHCAVTDEGIGISLSAQKKLFQEFSQVHDQHNTNYTGTGLGLAI 703

Query: 761 VESFINLHGGHVSISSSDEGVTTINC 786
               I + GG + +SS     +    
Sbjct: 704 CSELITMMGGEIELSSRLGHGSCFRF 729



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 3/119 (2%)

Query: 398 QTLHVIVTSNPR-GGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGR 455
             + + V S+   G T   F  +  +++   +   +        ++   +G  +    G 
Sbjct: 204 TGVQIPVNSHDEIGQTTQAFNRMIEKIEKNAQDLESANIRLSTILEAAVDGFIIIDTQGI 263

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           I   NPA   L+  + N L  G ++     +  R+           +       + + L
Sbjct: 264 IVQVNPAVGHLFGYDNNDL-IGHNVSIFMPSHERHMQNDFLMRFINSKRGGLQGKGREL 321



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 83/283 (29%), Gaps = 44/283 (15%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
               + L +       + ++        D  G I+  N +       +       IG + 
Sbjct: 231 EKNAQDLESANIRLSTILEAAVDGFIIIDTQGIIVQVNPAVGHLFGYDN---NDLIGHNV 287

Query: 242 KLFKEEIKKRM----------ISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSFG 287
            +F    ++ M               L+    E V+  + G      +      +     
Sbjct: 288 SIFMPSHERHMQNDFLMRFINSKRGGLQGKGRELVAQHKSGKLFPIDLSVSKMLIDGDVM 347

Query: 288 EAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             G+  D+S       +   T       L     A+   D    +Q  N +  +L+    
Sbjct: 348 LLGLVKDLSDIKRKEAEAKRTESILLATLEASQDALITIDITGRIQEFNEAASQLFGHSR 407

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS-------ETHKDTWHLPN 396
                  +  E+ E L     +   +  K +KE    V++ +       ++ +      +
Sbjct: 408 EQ-----ALGEIFEEL-----IFVDIERKAFKEE-LEVFRKTGCGPAIKKSVELMSIRAD 456

Query: 397 GQTLHVIVTSNP--RGGTIWM---FENLTVQVDLETKYNTLVK 434
           G    V +   P   G  I +     +++ ++  ET+     +
Sbjct: 457 GTHFPVEMKMIPVQLGDEILLTAFLHDVSERMQYETELKQAKE 499


>gi|298248783|ref|ZP_06972588.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551442|gb|EFH85308.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 981

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 123/753 (16%), Positives = 261/753 (34%), Gaps = 60/753 (7%)

Query: 70  SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE-NWL---KFHHYI 125
            +  +L+        VW  + +    +  L+QR+      T   +    WL         
Sbjct: 255 DELRTLVDALPQ--FVWIARPDG--YVTYLNQRLLDSLALTHEQAEGDGWLAGVHPDDRQ 310

Query: 126 KLSKATEKLRKEGQSFDLVAETQND-----CAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
           ++ +A +   + G+ +++    Q+            G    +     +  + G  +++ E
Sbjct: 311 RVWEAWQTSIQAGEPYEVGHRMQDGTSGAYRWFLARGMPQRNAQGTILRWV-GTCTDIEE 369

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                ++L      ++VL +++   VW     G  ++ N  Y   T   G   ++A+G  
Sbjct: 370 QKRVEQQLKASEENWRVLAETVPQFVWTIQPDGSAMYFNQRYYDYT---GASPEQALGHG 426

Query: 241 RKLFKEEIKKRMISSSALE-------KNFCETVSTLEHGNNKSY--KIVRVLNSFGEA-- 289
              F          +                 +   + GN + +  + + V +  G+   
Sbjct: 427 WSQFLHPDDSEQARALRRHLLATGEAYEIEYRLREGKTGNYRWFLARAMPVRDETGQIVK 486

Query: 290 --GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDL 343
             G + D+ ++      +  + E L  L   +         +   ++ N+ + +   + L
Sbjct: 487 WFGTSTDIEEQKRAEQWIKESEENLRVLAETVPQLVWTARPDGRHEYTNQHWCDYTGLTL 546

Query: 344 A-FLATNPSNDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
             F +   ++ + +  +   S   L +               +  +T    W L   + L
Sbjct: 547 EHFQSDGWAHLQFIHPDDRESNRVLGQHALDTGELFEHEERLREGQTGAYRWFLT--RAL 604

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            V   +           ++  Q  +E       +     ++    G  V G   +I  +N
Sbjct: 605 PVRDEAGQIVKWFGTSTDIDEQKRIEEALRESQERASTLMNSNIIGTFV-GEGEQIVDAN 663

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             F  +       L  G  I  +  T   Y   +    L A    +        +     
Sbjct: 664 DTFLRMTGYTREDLRAG-RINWMHMTPPEYLTRT----LEAHKELAAQPSLAPYEKEYVC 718

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
              S L   +  +         +       A + L          ++ K+ F+   S+EL
Sbjct: 719 KDGSRLPVLVGGVVLEHHPRQAIIFVLDNSARKEL----------EQRKDDFINMASHEL 768

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT +   T L+          + +  +  +      L  L+ ++LD++ +  G +K 
Sbjct: 769 RTPLTVVKLQTHLVHKRLEKHSQHEAATALSRVERPIEQLERLIAELLDVSQMQTGRLKY 828

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            +  + L++LL E+  ++      + I ++        S   DR RL Q+F+ +LSNA+ 
Sbjct: 829 IWERVDLDELLREIADTMQRMSPSHTIVVRGTVQT---SVTGDRDRLRQVFTNLLSNAIK 885

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGL 758
           +S    TV ++ +         V+++G  IP +  K +F RF            G+G+GL
Sbjct: 886 YSPNAKTVEVELSASEEAVTIRVQDHGLGIPREKHKKIFERFYRATGLSHETIPGLGMGL 945

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            IV   +  HGG +++ S     +T    +P K
Sbjct: 946 YIVAEIVKGHGGTITVESDVGKGSTFTVTLPRK 978



 Score = 64.6 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/415 (12%), Positives = 124/415 (29%), Gaps = 33/415 (7%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-EGIVFQKA 236
           ++      +           + ++L    +  D A  I++ N S +         +   +
Sbjct: 1   MSNAKQTRRVTPASSDTLLTILETLPDAFFVVDDATTIVYTNASAQAMLGATREELCGTS 60

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG-----EAGI 291
           +             + +  +  +      V+ +    +    +       G       G 
Sbjct: 61  LWRGAPHLVSPSLYQAVRKT-RQTREPTNVAYVSPTTHSWLHVQLSPTVGGLMLHFHEGR 119

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A    ++ + +       +IL N++  +AI   +  +   N+  +E  ++    +     
Sbjct: 120 A-PTRRQESFSQSEHLCADILENISDWLAILAPDGMILAINQRPLEDAQVRREEIVGRSL 178

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-- 409
            +        A     +   +   +     + S    +  W+L     L V +  +    
Sbjct: 179 AETPWWSYAPAVLQRLRAAIEQACKGETVRFDSRICPQPGWYL----DLAVTIAPHFDAN 234

Query: 410 ---GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 +++  ++T +  +E +  TL       +D L + V +  PDG +   N      
Sbjct: 235 KQVEYLLYVGLDITKRKQVEDELRTL-------VDALPQFVWIARPDGYVTYLNQRLLDS 287

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                 +      +  +     +   E+  W         ++   +   GT    +    
Sbjct: 288 LALTHEQAEGDGWLAGVHPDDRQRVWEA--WQTSIQAGEPYEVGHRMQDGT--SGAYRWF 343

Query: 527 EYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               +P  NAQ      + T  ++ +  R E+ L    E  R   E    FV  +
Sbjct: 344 LARGMPQRNAQGTILRWVGTCTDIEEQKRVEQQLKASEENWRVLAETVPQFVWTI 398


>gi|283850395|ref|ZP_06367684.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283574421|gb|EFC22392.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 782

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/639 (18%), Positives = 226/639 (35%), Gaps = 102/639 (15%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +Y ++   +   F++A+ +  ++     ++R          F   +S L  GN++     
Sbjct: 155 AYGRSIGADETAFRRALDQVPRM----SRERFAKICQALDRFARHISALALGNHQQ---- 206

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                      A  + +     D+L     +  +I+  L     + D++  + F NR+  
Sbjct: 207 -----------AQRIRELRQTRDRLGIRDRNLADIIDFLPDPTLVLDEDGTVIFWNRALE 255

Query: 337 ELWEIDLAFLATNPSN-----------DELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
           +L  +    +                   L+++ R A   P+       +  +  +   +
Sbjct: 256 KLTGVAAVDMLGKSDFAYGTAFYGSPTPLLVDYARGAVSRPDP------RYAVTEIGADA 309

Query: 386 ETHKDTW-HLPNG-QTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVKVQGE 438
              + T   LP G + +     +   G     G I    ++T +   +T      +    
Sbjct: 310 IIAEVTLLSLPGGDRQVWGKAVALRDGTGRIIGGIETIRDVTERHQADTALRESEEKFRR 369

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            ++   EGV V   D +   +N     +     + +  G H  +  A             
Sbjct: 370 IVETAHEGVLVLDGDFKATFANRRMADMLGYAPDDML-GRHFEDFVADDHLPLAREREAR 428

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAER 553
           L       F+   K+ +G            S  PL +        +  F ++TD  R E 
Sbjct: 429 LRQGESGVFEHRLKTREG-----GGLWALVSASPLYDVSGASLGALGMFTDITDRKRIEE 483

Query: 554 ALTEKNEALR-------------------------KADEIKNSFVQHVSYELRSPLTNII 588
            L      L                          + D +K++F+  VS+ELR+PLT+I+
Sbjct: 484 ELANHRHRLEAEVEERTRDLRLQAMELAEANIRMSELDRLKSAFLSTVSHELRTPLTSIL 543

Query: 589 GFTDLLKTS-------------KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           GF  L+                 L +   + +  +  +   +  L  L+ND+LDL+ +++
Sbjct: 544 GFAKLIGRDFTEQFLPLASGQAALEARGRRIADNLSVVFHEAERLTRLINDVLDLSRIES 603

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           G M      I   D+L    +SIA        I     +  ++     D  +L+Q+ S +
Sbjct: 604 GSMHWRDRRIAPLDVLRTAARSIAGLLAARPEIVFVFDATEQVPDLFMDPDQLIQVVSNL 663

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH----RGQ 750
           L NA+ F+  G  V +    D       V ++G  IPE   +S+F +F            
Sbjct: 664 LQNAVKFTRTGE-VRMTVRTDGEAVQIVVADSGIGIPESELESIFGKFHQVGRGDTLSDA 722

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +G GLGL+I    +  +GG +  +S     +  + R+P
Sbjct: 723 AKGTGLGLAICGQIVRHYGGRIWATSRLGQGSAFHVRLP 761



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 82/305 (26%), Gaps = 41/305 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV- 232
               + E      +L         + D L       D+ G +++ N + +K T    +  
Sbjct: 206 QAQRIRELRQTRDRLGIRDRNLADIIDFLPDPTLVLDEDGTVIFWNRALEKLTGVAAVDM 265

Query: 233 --------FQKAIGESRKLFKEEIKKRMISSSALEKNFCE---------TVSTLEHGNNK 275
                        G    L  +  +  +                     T+ +L  G+ +
Sbjct: 266 LGKSDFAYGTAFYGSPTPLLVDYARGAVSRPDPRYAVTEIGADAIIAEVTLLSLPGGDRQ 325

Query: 276 SYKIVRVLNSF-----GEAGIAIDVSKE----ITVNDQLTHTYEILHNLTVAIAIFDQNR 326
            +     L        G      DV++       + +       I+      + + D + 
Sbjct: 326 VWGKAVALRDGTGRIIGGIETIRDVTERHQADTALRESEEKFRRIVETAHEGVLVLDGDF 385

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
              F NR   ++       +          E   + + LP     +     +        
Sbjct: 386 KATFANRRMADMLGYAPDDMLGRH-----FEDFVADDHLPLAREREA---RLRQGESGVF 437

Query: 387 THKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKY-NTLVKVQGETI 440
            H+       G    V  +          G + MF ++T +  +E +  N   +++ E  
Sbjct: 438 EHRLKTREGGGLWALVSASPLYDVSGASLGALGMFTDITDRKRIEEELANHRHRLEAEVE 497

Query: 441 DHLSE 445
           +   +
Sbjct: 498 ERTRD 502



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 31/209 (14%)

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
            GR+ G    +R         ++ E       L      F+ + ++    V   D     
Sbjct: 337 TGRIIGGIETIR---------DVTERHQADTALRESEEKFRRIVETAHEGVLVLDGDFKA 387

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEE-----IKKRMISSSALEKNFCETVSTLE 270
            +AN   ++  +  G      +G   + F  +      ++R       E    E      
Sbjct: 388 TFAN---RRMADMLGYAPDDMLGRHFEDFVADDHLPLAREREARLRQGESGVFEHRLKTR 444

Query: 271 HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
            G      +           S G  G+  D++    + ++L +    L      +    +
Sbjct: 445 EGGGLWALVSASPLYDVSGASLGALGMFTDITDRKRIEEELANHRHRLE---AEVEERTR 501

Query: 325 NRYLQF-----HNRSFVELWEIDLAFLAT 348
           +  LQ       N    EL  +  AFL+T
Sbjct: 502 DLRLQAMELAEANIRMSELDRLKSAFLST 530


>gi|299821889|ref|ZP_07053777.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
 gi|299817554|gb|EFI84790.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
          Length = 591

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/372 (21%), Positives = 156/372 (41%), Gaps = 27/372 (7%)

Query: 424 DLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            LE++   +    +     + +L  GV +   D  + ++N     L  T       G + 
Sbjct: 240 SLESQMQAIKQNEQRLTAVLQNLVSGVMLINNDKMVIMTNKMMYELLDTPSIA---GKYY 296

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +  + +          L  A I +   +R+ +  TL    +  L+ ++ P+   Q  +
Sbjct: 297 YEVIKSFA-------LTQLVEAAIQTKSLQREEI--TLYFPKEMTLDANVSPILTDQGEI 347

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T +           L      ++  + ++  FV +VS+EL++P+T + GF + L    + 
Sbjct: 348 TGLI---------LLLHDITQIKHLENVRTEFVTNVSHELKTPVTALKGFAETLLDGAMY 398

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +   +++  +   S  L  L+ DIL L+ ++   + +N   + +   + E  Q++  
Sbjct: 399 D-EALLKKFLGIMKDESDRLHRLILDILALSRIEQHALPINQEVVDIYQTITEAAQTVTE 457

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              + NI + +    K      D  +L QI   ++SNA+ ++ +  TV +       + +
Sbjct: 458 SAKQKNIDLVLPHAAKPLPIETDNDKLKQIIINLVSNAVAYTPENGTVKVDVEESPHEVL 517

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F+V +NG  IP    + VF RF        R   G GLGLSIV+      GG + ++S +
Sbjct: 518 FTVADNGIGIPAKEIERVFERFYRVDKARSRYSGGTGLGLSIVKHLTEQLGGRIEVASVE 577

Query: 779 EGVTTINCRIPS 790
              TT +  +P 
Sbjct: 578 GEGTTFSIHLPK 589


>gi|226227266|ref|YP_002761372.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226090457|dbj|BAH38902.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 745

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 156/370 (42%), Gaps = 11/370 (2%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +          T+D   +G+      G I   NPA   L+  +   ++ G +I+ +  +
Sbjct: 13  RRAEMSESRLRATLDTAVDGIVTTDAIGTIVGFNPAAERLFGWDSAEIT-GRNIKEVMPS 71

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---V 543
             +     +      A    +      + G     S   L  ++  +     ML      
Sbjct: 72  RDQIMQLREQQHGLIARAQEYVGSSSEILGRRRDGSLVPLRLALGRMQLHDEMLYVGFVS 131

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++    E +L E      +A   K++F+ ++S+E+R+P+  IIGFT+LL  S    L 
Sbjct: 132 DISERRAMESSLREAAAQAERAAAAKSTFLANMSHEIRTPMNAIIGFTELLLQS---DLT 188

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q  ++  +  SS  LL L+NDILD   ++ G M L      L  +  +++ S+     
Sbjct: 189 TTQRNHLSTVRQSSRSLLGLINDILDTTRLEKGGMVLEMIDFSLKGISMQIESSLRLSAQ 248

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + +       L   F+ D  R+LQ+ + ++ NA+ F+ +G  V L  + ++   I  
Sbjct: 249 ARGLSLTTSYPANLPEYFLGDPLRILQVLTNLVGNAIKFTERGG-VELSFSSEDEQVIIM 307

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  + ++   S+F  F        RR  G GLG +I    + L  G + + S+   
Sbjct: 308 VRDTGIGMTQEQVASIFTPFTQADASISRRFGGTGLGTTISRQLVELMDGQIEVESALGQ 367

Query: 781 VTTINCRIPS 790
            +    R+P 
Sbjct: 368 GSCFRVRLPL 377


>gi|289207719|ref|YP_003459785.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix]
 gi|288943350|gb|ADC71049.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix]
          Length = 697

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 154/381 (40%), Gaps = 7/381 (1%)

Query: 415 MFENLTVQVDL---ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           +      + DL    +  +   +     ++  + G+      G I+  N A   L+    
Sbjct: 157 LLREYLARRDLGHSRSALDAQGQRLAAVLETAAAGIIQIDHTGHIEQFNSAAERLFDYPA 216

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
            ++  G ++  +      + ++                  + ++G     S   ++ ++ 
Sbjct: 217 EQVL-GHNVSMLMPARWAHEHDDYLRHYRETGQARVIGSGREVEGLRRDGSTFPMQLAVS 275

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +   +       VTD      +   +     +A+  K+ F+  +S+ELR+PL +I+GF+
Sbjct: 276 EVRIEEQPHYIGIVTDLTDLHESQRRELAEAERANRAKSEFLSSMSHELRTPLNSILGFS 335

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L++  +   L  +Q + VE+I  S   LL L+NDILDL+ ++AG M ++         L
Sbjct: 336 QLMRADRTHPLPERQQRQVEHIERSGQHLLALINDILDLSRIEAGRMAMSLEPTDPAMTL 395

Query: 652 NEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            E    I  +  E  I++        L +  AD  RL Q+   ++SNA+ ++     V +
Sbjct: 396 AECHGMIEGEARERGIQLDFPPPEPALPAVQADHTRLKQVLLNLVSNAIKYNRDKGIVRV 455

Query: 711 KAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768
           +      G   F V++ G  IPED    +F  F       G  +G G+GL I    +   
Sbjct: 456 RVTPMPEGRMEFRVRDTGLGIPEDRRAELFRPFSRLGHETGAIQGSGIGLVISRELVRHM 515

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +   S +   T     +P
Sbjct: 516 GGELEYQSREGEGTDFFFTLP 536


>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
 gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
          Length = 758

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 111/248 (44%), Gaps = 12/248 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  E  L    +A   AD  K+ F+ ++S+E+R+P+  ++G  +LL  +    LN +Q 
Sbjct: 209 RMLVELDLKRAKDAAEAADRAKSVFLANMSHEIRTPMNGVLGMANLLLAT---PLNPEQH 265

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
              E +  S   LL ++NDILD + ++AG M+L      L D L       A      ++
Sbjct: 266 DLAETLCQSGESLLTIINDILDFSKIEAGRMELEAIDFDLADNLELALDLHAEAAARKHL 325

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIF 721
            + V  D  +      D  RL QI   ++ NA+ F+ KG  V +K   D+         F
Sbjct: 326 ELVVNIDPAVPRHVRGDPGRLRQILLNLVGNAIKFTEKGEVV-VKVTVDHNWPNRVLLRF 384

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  IPE + + +F  FV       RR  G GLGL I +    L  G + + S   
Sbjct: 385 AVTDTGIGIPEWVQEKLFQPFVQADTSTTRRFGGSGLGLVICKRLAELMSGSIGVESKPN 444

Query: 780 GVTTINCR 787
             +T    
Sbjct: 445 EGSTFWFT 452


>gi|329929853|ref|ZP_08283529.1| sensor histidine kinase ResE [Paenibacillus sp. HGF5]
 gi|328935831|gb|EGG32292.1| sensor histidine kinase ResE [Paenibacillus sp. HGF5]
          Length = 477

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 169/415 (40%), Gaps = 29/415 (6%)

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLS 444
           E   D      G  L+++ TS+  G     F ++  +++   +  N   +     +  +S
Sbjct: 79  EAANDIRKGKYGTRLNLV-TSDEIGELANTFNHMAAELETNIRNLNHEKEHLSSVLRSMS 137

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           + V  F   G++ L NP    + KT    L     ++      +         +L+ A +
Sbjct: 138 DAVITFDNHGQVILVNPPGLEIMKTW-KGLQWDDELQ--GGGWAADVMPKPLSELYYATV 194

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
               D+   L      +   +    + PL +   +   V V   +  +  L         
Sbjct: 195 NEGKDQSADLH-----VKQGIWSAHMAPLYSDDVIRGAVVVLRDITEQVTL--------- 240

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            ++++  F+ +VS+E+R+PL+ + G+++ L      S   +  + ++ I   S  +  LV
Sbjct: 241 -EKMRTDFIANVSHEIRTPLSMMQGYSEALLDGMAAS-PEESRELIQVIHEESLRMGRLV 298

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVAD 683
            D+LDL  ++AG  +L+   +   +L   V +  A +  E +I +++      L    AD
Sbjct: 299 KDLLDLTRMEAGHAELSLREMDAGELCERVFRKFAVRAKERDIDLQLNKLHSNLQLEAAD 358

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVF 739
             +L Q+ + +L NA   +  G  + + A R    +       V + G  IP +    VF
Sbjct: 359 EDKLEQVLTNLLDNAFRHTPSGKKIQITADRIAVSNTEALQVKVCDQGVGIPPEDLPFVF 418

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF        R    G G+GL+IV++ +  H G ++ +S     T     IP+K
Sbjct: 419 ERFYKADKARVRGETVGTGIGLAIVKNIVTAHHGTINATSEVGKGTVFTMTIPTK 473



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 84/246 (34%), Gaps = 38/246 (15%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    +N +  H   +L +++ A+  FD +  +   N   +E+ +    +      +DEL
Sbjct: 117 TNIRNLNHEKEHLSSVLRSMSDAVITFDNHGQVILVNPPGLEIMK---TWKGLQ-WDDEL 172

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPRGGT 412
                +A+ +P+ L      E  ++     +      H+  G     +  + + +   G 
Sbjct: 173 QGGGWAADVMPKPL-----SELYYATVNEGKDQSADLHVKQGIWSAHMAPLYSDDVIRGA 227

Query: 413 IWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + +  ++T QV LE            +  T + +     + L +G+A    + R      
Sbjct: 228 VVVLRDITEQVTLEKMRTDFIANVSHEIRTPLSMMQGYSEALLDGMAASPEESR------ 281

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRY-------YNESDGWDLFAAIITSFDDERKSL 514
               +    E  L  G  ++++                E D  +L   +   F    K  
Sbjct: 282 --ELIQVIHEESLRMGRLVKDLLDLTRMEAGHAELSLREMDAGELCERVFRKFAVRAKER 339

Query: 515 QGTLEL 520
              L+L
Sbjct: 340 DIDLQL 345


>gi|225155782|ref|ZP_03724269.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224803434|gb|EEG21670.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 409

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 151/384 (39%), Gaps = 35/384 (9%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E++     L+ +    +     T+  L E V V      I L+N A  +++   +  L
Sbjct: 44  LVEDIN---RLDKQRAGQLAQLEATLGSLQEAVLVVDAANTILLANKALSAIFPRTDAIL 100

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSII 531
                +  I                F   + +   +    Q  +E   +S    LE +  
Sbjct: 101 --HQRLETIVRNAP-----------FLRYVEAVRRDGARPQQEIEFEDNSNATWLEVTGT 147

Query: 532 PLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +P   N+Q       + +  R +R            + ++  FV +VS+ELR+PL+ I 
Sbjct: 148 VIPALHNSQPPCALFVLHNITRQKRL-----------EAVRKEFVANVSHELRTPLSVIK 196

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ + L         +++ +++  I   +  L  L+ D+L L+ +++    L      L+
Sbjct: 197 GYAETLIDGGPDMPPAQRDRFLHIIRRHTDRLNTLLEDLLTLSRLESPNTGLRREPGDLD 256

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+  +     T+       +++      G    D  +L Q+F  +L NA+ ++  GS +
Sbjct: 257 RLVKTLLDEYRTRPAAARHTLQLTLGAAPGPLNFDALKLTQVFHNLLDNALKYTPPGSRI 316

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            +       +    V +NG  IP      +F RF         +  G GLGLSIV+  + 
Sbjct: 317 DIAIRPKGSEIEICVSDNGPGIPVADLPHIFERFYRVDKGRSRETGGTGLGLSIVKHIVQ 376

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           LHGG V + S      + +  +P+
Sbjct: 377 LHGGRVWVESEPGRGASFHFTLPA 400



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 294 DVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN--- 349
           D+++       QL      L +L  A+ + D    +   N++   ++    A L      
Sbjct: 47  DINRLDKQRAGQLAQLEATLGSLQEAVLVVDAANTILLANKALSAIFPRTDAILHQRLET 106

Query: 350 -PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
              N   L ++ +  +   +   +   E+  +          TW    G  +  +  S P
Sbjct: 107 IVRNAPFLRYVEAVRRDGARPQQEIEFEDNSNA---------TWLEVTGTVIPALHNSQP 157

Query: 409 RGGTIWMFENLTVQVDLET 427
               +++  N+T Q  LE 
Sbjct: 158 P-CALFVLHNITRQKRLEA 175


>gi|53715629|ref|YP_101621.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|253566558|ref|ZP_04844011.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|52218494|dbj|BAD51087.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|251944730|gb|EES85205.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301165085|emb|CBW24653.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 557

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 178/384 (46%), Gaps = 22/384 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q   + K   +  +    + H+   V V   D ++  +N    +    +      G  ++
Sbjct: 29  QSASDRKLENVNCLFDAILTHIHAYVLVIDSDFKVLKTNYYDLTHLSPDGKEKRVGDLLQ 88

Query: 482 NIAATCSRY----YNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDS---------VL 526
              A  ++     +       +  AI  +F    E   LQ +L +  D          + 
Sbjct: 89  CRNALSAKGGCGTHAFCQECPVRGAIGNAFRQKKEFTDLQSSLNIAIDEHEFVKCDVMIS 148

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              +      + +LT  ++T   + E AL E  E    AD  K++F+ ++S+E+R+PL  
Sbjct: 149 GVFMTLDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNA 208

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL      +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + 
Sbjct: 209 IVGFSELLA---AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVD 265

Query: 647 LNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           +N LLN+++Q    K+  N+ ++I             DR R+ Q+ S  +SNA+ F+++G
Sbjct: 266 INLLLNDLEQLFRMKIGSNSPVQIITEPGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEG 325

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
           S + +          F V + GS I  D  + VF+RFV    +  + G GLGLSI ++ +
Sbjct: 326 S-IRIGYQSSENGLRFYVSDTGSGISADKLEGVFDRFVRL--QSDKNGNGLGLSICKTIV 382

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
           N  GG +   S     +T    +P
Sbjct: 383 NKLGGEIGAESEVGKGSTFWFTLP 406


>gi|332306726|ref|YP_004434577.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174055|gb|AEE23309.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1115

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/505 (18%), Positives = 202/505 (40%), Gaps = 38/505 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 ++     +  FD++  ++  N +  EL   D A L       + +  L    ++
Sbjct: 273 ARLRATINTSVDGVLGFDRHGIIESANDALCELLGWDDAEL-----IGQDVRVLMPNERI 327

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENLT 420
            E   +   + N     K+S     T    +G+ + + +             +    +L 
Sbjct: 328 SEFNQYLEMRLNGIHPDKTSNGRDTTICQKDGRLIPIRLAIGFVELGQESNFVAFISDLR 387

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVA-----------VFGPDGRIKLS-NPAFRSLWK 468
            +V++E             I ++  G+A           VF  D    +S  PA   +  
Sbjct: 388 YRVEMERALRQSEAQFRSLISNIP-GIAYRCLDNEERPMVFISDAIESISGYPASDYVGN 446

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             +       H  +I  T ++     +G  LF      ++ +R      +  L       
Sbjct: 447 PPKRYFHEHVHPDDIEETVAKV----NGQHLFKVEYRIYNAKR-----EIRWLLGYGTHA 497

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                         +++T+    E++L    +   +A   + +F+ ++S+E+R+P+  +I
Sbjct: 498 ENTETGEKWLDGFIMDITERKEMEQSLLIAKDKAEQAASSRAAFLANMSHEIRTPMNAVI 557

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+D+L         ++Q +++  I+ S+  LL+L+NDILD A +D G  +       L 
Sbjct: 558 GFSDILLDDVF---EAEQRKHLTTINQSAKSLLHLLNDILDSAKLDKGKFEFEMRDFSLI 614

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           + ++ V  ++  + ++  + + V    ++ G+F     R+ Q+ + ++ NA+ F+  G  
Sbjct: 615 EEIDAVVSTLWLQANKKELYLNVSVAPEVAGAFHGAPDRIRQVLTNLIGNAIKFTVLGGV 674

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            I    + +G   F++ + G  + ++    VF+ F        RR  G GLG +I +  I
Sbjct: 675 NIKVGVKPSGCIEFAIIDTGIGMTKEQLNLVFDAFGQADASMSRRFGGTGLGTTISKQLI 734

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L GG +S +S+    +  +  +P 
Sbjct: 735 ELMGGKISATSTYGEGSCFSFTLPL 759


>gi|75675393|ref|YP_317814.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420263|gb|ABA04462.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 779

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/438 (21%), Positives = 180/438 (41%), Gaps = 52/438 (11%)

Query: 396 NGQTLHVIVT----SNPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           +G  + + V      N  GG   I +  ++T Q  L  K         + I+ + E   +
Sbjct: 330 SGHWIWLRVRCELSQNANGGAHLIGIAVDVTEQKSLAEKSIEADLRLRDAIESIPEAFVL 389

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           +  D R+ L N  F+ L K  ++ ++ GT    +              ++ A    +   
Sbjct: 390 WDADDRLVLCNSHFQRLHKLPDSAVAVGTPYETVVEVGR-------MPEIRARHSETGTV 442

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-------------- 555
             K+    ++L   + L  S     +   +    ++T     E+ L              
Sbjct: 443 TLKAHTFDVQLADGNWLHVSERRTKDGGYVSVGTDITRIKEHEQKLVENDLRLRATVIDL 502

Query: 556 ---------------------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                                 ++      A+  K+ F+ ++S+ELR+PL  IIGF++++
Sbjct: 503 KRTQATLEQQAIKLADLAQKYADEKNRAEDANRAKSKFLANMSHELRTPLNAIIGFSEIM 562

Query: 595 KTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                G+L ++K S+Y   I  S   LL ++ND+LD++ ++AG   L+  T+ L  +L+E
Sbjct: 563 SNGMFGTLGSTKYSEYCRDILTSGQYLLEVINDVLDMSKIEAGRTNLDMETLDLTGVLDE 622

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + ++ +  +  +   V SD  + S +ADR+ + QI   +LSNA+ F+     ++ ++ 
Sbjct: 623 SLRVVSGRTSDKGLTFDVRSDDDI-SIIADRRAVKQIMVNLLSNAVKFTPASGRIMARSK 681

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
                   ++ + G  I     + +   F            G GLGL+I +S +NLH G 
Sbjct: 682 VFENSVTLTIADTGIGIAPHALRRLGKPFEQVESQLTKTHAGSGLGLAIAKSLVNLHSGS 741

Query: 772 VSISSSDEGVTTINCRIP 789
           + I S     T +   +P
Sbjct: 742 MRIRSKPGAGTVVRVTLP 759



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 66/158 (41%), Gaps = 14/158 (8%)

Query: 289 AGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+DV+++ ++ ++         + + ++  A  ++D +  L   N  F  L ++  +
Sbjct: 353 IGIAVDVTEQKSLAEKSIEADLRLRDAIESIPEAFVLWDADDRLVLCNSHFQRLHKLPDS 412

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +A     + ++E      ++PE     +    +     + + H     L +G  LHV  
Sbjct: 413 AVAVGTPYETVVEV----GRMPEIRARHSETGTV-----TLKAHTFDVQLADGNWLHVSE 463

Query: 405 TSNPRGGTIWMFENLTVQVDLETKY-NTLVKVQGETID 441
                GG + +  ++T   + E K     ++++   ID
Sbjct: 464 RRTKDGGYVSVGTDITRIKEHEQKLVENDLRLRATVID 501



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 80/275 (29%), Gaps = 24/275 (8%)

Query: 55  VNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIP-QTDTDLL 113
              T +   ++ +   +       N     +WD       I         +  ++ +DLL
Sbjct: 230 WQSTRAREGDLINDAVRSRIDTALNRGRCGLWDWDLSRGRIFWSQSMFTMLGMESRSDLL 289

Query: 114 SFENW--LKFHHYIKLSKATEKLRKEG-----QSFDLVAETQN----DCAIKIEGRVSGS 162
           +F     L     I L +  ++L         QSF +   + +        ++    +G 
Sbjct: 290 TFGEVSSLVNSDDIDLFEVADQLISGKIGHIDQSFRMRHSSGHWIWLRVRCELSQNANGG 349

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
              + I         LAE +++           +   +S+       D    ++  N  +
Sbjct: 350 AHLIGIAVDVTEQKSLAEKSIEADL------RLRDAIESIPEAFVLWDADDRLVLCNSHF 403

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN---FCETVSTLEHGNNKSYKI 279
           ++    +      A+G   +   E  +   I +   E            ++  +     +
Sbjct: 404 QRL--HKLPDSAVAVGTPYETVVEVGRMPEIRARHSETGTVTLKAHTFDVQLADGNWLHV 461

Query: 280 V-RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
             R     G   +  D+++      +L      L 
Sbjct: 462 SERRTKDGGYVSVGTDITRIKEHEQKLVENDLRLR 496


>gi|332706978|ref|ZP_08427038.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354243|gb|EGJ33723.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 779

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 145/294 (49%), Gaps = 13/294 (4%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           D E+  LQ   E L+ ++ +  +      Q       V +  +A   L +  +A + A+ 
Sbjct: 343 DSEKNFLQAIAEHLAVAIYQAKLYAQVQQQNNTLEQRVIERTQA---LRDALQAAQAANL 399

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN------SKQSQYVEYISASSTILL 621
            K+ F+  +S+ELR+PLT +IG    L     G  +       KQ +Y++ I  +   LL
Sbjct: 400 AKSEFLATMSHELRTPLTCVIGMAATLLRWCFGQDSSQRLPVEKQQRYLKTIQENGQHLL 459

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGS 679
            L+NDILDL+ V+AG + L  S   L+ L N++  S+  + ++  + +++      +   
Sbjct: 460 ELINDILDLSQVEAGKLVLTISKFSLSKLANQLLSSLNEQAYQQQVTLQLDWRVPPERDC 519

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F AD++R+ QI   +LSN + F+ +G  VIL+   +N   +F V++ G  I +D    +F
Sbjct: 520 FSADQRRVKQILFNLLSNGIKFTPEGGKVILRVWPENHLVVFQVEDTGIGIAQDQLPLLF 579

Query: 740 NRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F       R +  G GLGL++ +  I LH G + + S     +     +P++
Sbjct: 580 QKFQQLETPYRRKYEGTGLGLALTKQLIELHRGKIEVESVVAEGSCFTVWLPNQ 633


>gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 713

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 153/371 (41%), Gaps = 22/371 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           + E +Y +LV+ Q E        +     +GRI  +N  F  L  +    L        +
Sbjct: 73  ESEERYRSLVEAQIEV-------IVQRDAEGRITFANEGFARLAGSSPGALLGTAQQLTV 125

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             + +   +  DG       +   +         +E    +V+     P    + +    
Sbjct: 126 LDS-TPVESRPDGTRAADVAVAPPEGGATRWFAFVET---AVVGRDGRP----EVLSAGR 177

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +T+ + A R+L E       A   K+ F+  VS+E R+PL  I+G  DL+  +    L+
Sbjct: 178 EITERIEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLDT---PLS 234

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+  +  S   LL+L++ ILD + ++AG + L         L+  V + +A +  
Sbjct: 235 PEQETYIRAVKTSGEALLSLIDGILDFSKIEAGRLDLAAEPFDPAGLVESVVELLAPRAQ 294

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  + I       L    V D  R+ QI   +  NA+ F+  G  V + A R   +   +
Sbjct: 295 DKGLEIAADLAEDLPLQVVGDSDRVRQILLNLAGNAVKFTESGG-VGVTAERAGAEIALT 353

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IPE+    +F  F        RR  G GLGL+I    ++  GG + ++S  + 
Sbjct: 354 VRDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIEVTSRPDE 413

Query: 781 VTTINCRIPSK 791
            +     +P +
Sbjct: 414 GSCFRVVLPLR 424



 Score = 38.0 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 9/141 (6%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
            LS     ++ L ++   ++  RD  G I +AN  + +   +          +   L   
Sbjct: 70  HLSESEERYRSLVEAQIEVIVQRDAEGRITFANEGFARLAGSSPGALLGTAQQLTVLDST 129

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFG---EAGIAIDVSKEITV 301
            ++ R   + A +      V+  E G  + +  V   V+   G         ++++ I  
Sbjct: 130 PVESRPDGTRAAD----VAVAPPEGGATRWFAFVETAVVGRDGRPEVLSAGREITERIEA 185

Query: 302 NDQLTHTYEILHNLTVAIAIF 322
              L          +VA + F
Sbjct: 186 VRSLDEARSRAEAASVAKSRF 206


>gi|303248204|ref|ZP_07334468.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490468|gb|EFL50377.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 820

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 154/382 (40%), Gaps = 39/382 (10%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D        +      I++L++G+ V   D RI L NPA  +++  +             
Sbjct: 238 DTTRDLEDSLAHTRAIINNLADGLVVLDADARITLFNPALLAMFGKK------------- 284

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           A   +            AA+  +     ++    + L +    +     +  A       
Sbjct: 285 AEEVADQPAAEAFPQAMAAMAGACPAANQATAAEVRLANGGTGKAVATGVRLAG------ 338

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +  RA   L       ++ D +K  F+  VS+ELR+PLT+++GF  +++      + 
Sbjct: 339 ---EERRATIILVRDITVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFTDLVA 395

Query: 604 S--------------KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
                          +  + ++ I A    L  LV+D+LD+A +++G  + N + + L +
Sbjct: 396 PALTEATPKTWRGAQQIRENLDIIVAEGQRLTELVDDVLDIAKMESGRCEWNMAPVSLAE 455

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                 +++A       I ++      L   + DR RL+Q+F  +L NA+ F+  G+ ++
Sbjct: 456 TAGHAVRAVAGLAARKGISLENKLPANLPRILGDRDRLIQVFVNLLGNAVKFTEHGA-IV 514

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           ++ + D  +   +V+++GS I     + +F +F           +G GLGL I    I  
Sbjct: 515 VEGSVDGSEIRVAVRDSGSGIAPADLERIFEKFKQAGDTLTEKPKGTGLGLPICRQIIER 574

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +   S     +     +P
Sbjct: 575 HGGRIWAESEPGQGSVFRFTLP 596



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + D L HT  I++NL   + + D +  +   N + + ++      +A  P+ +   + 
Sbjct: 241 RDLEDSLAHTRAIINNLADGLVVLDADARITLFNPALLAMFGKKAEEVADQPAAEAFPQA 300

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           + +        N  T  E   +   + +               V +    R  TI +  +
Sbjct: 301 MAAMAGACPAANQATAAEVRLANGGTGKAVATG----------VRLAGEERRATIILVRD 350

Query: 419 LTVQVDLET 427
           +TV+ +++ 
Sbjct: 351 ITVEKEVDR 359


>gi|209523205|ref|ZP_03271761.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496356|gb|EDZ96655.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1366

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 5/241 (2%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L +  EA   A+  K+ F+ ++S+ELR+PL  I+GFT LL   +   L S+Q  Y++ I
Sbjct: 885  QLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLL--GQNSGLTSQQQDYLQII 942

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S   LL+L+N++LDL+ ++AG + LN +   L  LL  +   +  K    N+ + +  
Sbjct: 943  QQSGKYLLSLINEVLDLSKIEAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVLDIQL 1002

Query: 674  DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIP 731
            D  +  +V  D  +L Q+   +L NA+ F+  G   +  +   +     F V++ G  I 
Sbjct: 1003 DQDIPDYVKTDESKLRQVLVNLLDNAIKFTDAGYVTLRGSFVSSVSQLYFEVEDTGPGIT 1062

Query: 732  EDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             D  + +F  FV     R  ++G GLGL+I + ++NL GG ++I S  +G       +P 
Sbjct: 1063 PDEQERLFQPFVQTDVGRRHQQGTGLGLAISQQYVNLMGGKITIVSVVDGGAKFMFNLPV 1122

Query: 791  K 791
            +
Sbjct: 1123 E 1123



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/395 (12%), Positives = 129/395 (32%), Gaps = 64/395 (16%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           +         + + I        E I +++ + S  E    E     ++G+ +  +   V
Sbjct: 210 EDLHNLGDRFYWEQIHPDDLPILETILEQVSALSEGEVLDIEYRLRHKNGSYRWLRSQEV 269

Query: 283 LNSFGEAGIAI-------DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
             +    G+A+       D++    +  QL  +      I ++++ +I + D    +   
Sbjct: 270 PFTKDANGLAVQVLGTAQDITSHKLIESQLQESEARLQIIFNSISDSILMVDCQGIIHAV 329

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N + + L+      L  +     +     +   +               + + +    + 
Sbjct: 330 NPAGLNLFGRTSEELINHHLGLPITVGNVAELGIINPK-------RGLVMVEMTVAETEW 382

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
              P     +V+            F ++T +   +       +   + ++H+ +   +  
Sbjct: 383 LQRP----FYVVC-----------FRDITERCKTQEALQESEERFSQVVNHIQDVFWLTS 427

Query: 452 PDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
           P G ++   +PA+  +          G   +++      +  E+   D   ++I +F D+
Sbjct: 428 PRGDKLFYISPAYEKI---------WGRSCQSVYDDPGSWL-EAVHPDDLQSVIVNFSDQ 477

Query: 511 RKSLQGTLE----LLSDSVLEY--SIIPLPNAQTMLTF-----VNVTDSVRAERALTEKN 559
             +    +E      +  VL       P+ N +  +        ++T+  + E  L ++ 
Sbjct: 478 EYAQSSFIEYRIFRPNGDVLWICDRAFPIKNERGDVVRVARIAEDITNRKKTEEHLRQQA 537

Query: 560 EALRKADEI---------KNSFVQHVSYELRSPLT 585
           E      ++          +  +Q+   ELR  L 
Sbjct: 538 EREHLLYQLTLHISQSLNLDDILQNTVNELRHLLN 572


>gi|209885750|ref|YP_002289607.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5]
 gi|209873946|gb|ACI93742.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5]
          Length = 601

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 156/375 (41%), Gaps = 19/375 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L +       H+S+ +A    +G +   +PA  +L       L        +  
Sbjct: 203 EGRYRLLAR-------HMSDVIARHRANGDVNFISPAAEALLGVPGPLLLRHGLFDRVHV 255

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-------- 537
                Y  +           S +  R      +       +E    PL   Q        
Sbjct: 256 ADRPRYLTALSDAARGGEECSVE-FRVRRDSAVHGGEFIWVEMRCRPLEPTQDKASGACE 314

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    +VT+    E AL        +A   K+ F+  +S+ELR+PL  IIGF+++L   
Sbjct: 315 VVSVMRDVTERKAQEEALEIARREAEEAGASKSRFLATMSHELRTPLNAIIGFSEMLTHE 374

Query: 598 KLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +++ ++ +Y   I+ S   LL++VN ILD++ +++G  +L        + L     
Sbjct: 375 DEMKIDAARRHEYAGLINESGLHLLSVVNGILDMSKMESGKFELVAEPFAPRETLASSCN 434

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  K  +  + + + +   L     D +   QI   +LSNA+ F+ +G +V + A    
Sbjct: 435 LMVLKARDKGVELVLRAPSDLPQMTGDARAFKQILLNLLSNAIKFTEEGGSVTVSAEVAG 494

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
            +    V + G  I +D    +   F        G+R G GLGLSIV++ + LHGG + +
Sbjct: 495 RELALRVTDTGIGIGKDDLAHLGKAFFQAGASYHGRREGTGLGLSIVKNLVALHGGEMRV 554

Query: 775 SSSDEGVTTINCRIP 789
            S  +  TT++ R+P
Sbjct: 555 DSEIDCGTTVSVRLP 569


>gi|298241884|ref|ZP_06965691.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554938|gb|EFH88802.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 854

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 130/745 (17%), Positives = 253/745 (33%), Gaps = 79/745 (10%)

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
           L+ + N   +  D      E++G     +    +D  +              LS A  + 
Sbjct: 154 LVLDINQRPLA-DAHLRREEVVGTPVTDLPAWSSDPVVQE-----------HLSAAIARA 201

Query: 135 -RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
            R E   F+     + D ++ I                      L        +  +   
Sbjct: 202 SRGETVLFEAKIHPRPDLSLDIL------MTITSHRDASQQVEYLICAGRDITERKHAEE 255

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ-----KAIGES-RKLFKEE 247
             +VL D++  LVW     G   + N  +   T+     +Q     +AI    ++   E 
Sbjct: 256 ELRVLIDAIPQLVWMARPDGSRDYCNRRWCDYTDMTSEQYQGDGWLQAIHPDDQQRVLEV 315

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIV------RVLNSFGEAGIAIDVSKEITV 301
            +  + +    E        T   G  + + +           +    G   D+  +   
Sbjct: 316 WQHSVQTGRPYETELRLRQGTT--GAYRWFLVRAMQHKDDQGTTLKWFGTCTDIDDQKQA 373

Query: 302 NDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
             +L  + E    +   +   +     +  + + N+ F E           + + ++L  
Sbjct: 374 EQRLKASEENWRVLAETVPQLVWTTRPDGRVDYCNQRFCEYM---------HAAFEQLQG 424

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNP----RG 410
           +       PE +             ++ E  +      NG+T      +    P     G
Sbjct: 425 YGWRQFLHPEDVERVV--ALRHHTLETGEPFESEHRFRNGRTGAYHWFLARGMPVRNEAG 482

Query: 411 GTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSL 466
             +  F    ++  Q  +E       K     ID    G+  V G +  +  +N A+  +
Sbjct: 483 QIVKWFGTCTDIDDQKRIEEALRQSQKRIRALIDSNIIGIVSVEGEEDVLVEANNAYLHM 542

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
               +  +   T               S+   LF   +       +      EL+     
Sbjct: 543 TGYTQEDVRSRT-------LNVERTTPSEQAHLFHHALQELAARGQHTPFETELVCK--- 592

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           + S +P+     +       +  R        N A ++ ++ K+ F+   S+ELRSPLT 
Sbjct: 593 DGSRLPVLVGGVIF-----QECPRQIIGFVLDNSARKELEQRKDDFISMASHELRSPLTA 647

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +   T LL            +  +  +      +  LV ++LD++ + AG ++    T+ 
Sbjct: 648 MKLQTTLLHRQLAKQGIPASAPALSSMETQINKVSRLVEELLDVSKIQAGRLEYRQETVD 707

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L+ LL E+  ++        I   ++      S +ADR RL Q+F+ +LSNA+ +S    
Sbjct: 708 LDALLWEIADTMQQTHPSYRI---LVHGAVRASLMADRDRLGQVFTNLLSNAVKYSPDAQ 764

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           TV +  +         V ++G  IP +  + +F+RF       Q+   G+G+GL IV   
Sbjct: 765 TVEMDLSTSQETVTIRVHDHGLGIPREQREKIFDRFYRATGPSQKAIPGLGMGLYIVAEI 824

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +  HGG + + S+    +T    IP
Sbjct: 825 VKHHGGTIMVESTVGKGSTFTVTIP 849



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 109/385 (28%), Gaps = 31/385 (8%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
                + + L   V+  D    I++AN S +  T T                        
Sbjct: 16  ETLLHMLEILPDAVFVVDDTETIVYANASAQTLTGTTREEVCGTSLWCSAPHLVSPSLYQ 75

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
               A +      V+ +    N+   +       G A    +  + + +   L+    + 
Sbjct: 76  AVHKAKQTREPTEVAYVSPATNRWLHVSLSSTDEGLALFFQEQLEPLPLQHALSQDEHMY 135

Query: 313 HNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            +L    +  + I   +  +   N+  +    +    +   P  D     L + +  P  
Sbjct: 136 RDLLEGFSDGVMIVTPDGLVLDINQRPLADAHLRREEVVGTPVTD-----LPAWSSDPVV 190

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNPR-----GGTIWMFENLTVQ 422
               +      S  ++          P+    + + +TS+          I    ++T +
Sbjct: 191 QEHLSAAIARASRGETVLFEAKIHPRPDLSLDILMTITSHRDASQQVEYLICAGRDITER 250

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              E +   L       ID + + V +  PDG     N  +         +      ++ 
Sbjct: 251 KHAEEELRVL-------IDAIPQLVWMARPDGSRDYCNRRWCDYTDMTSEQYQGDGWLQA 303

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----- 537
           I     +   E   W         ++ E +  QGT    +        +   + Q     
Sbjct: 304 IHPDDQQRVLE--VWQHSVQTGRPYETELRLRQGT--TGAYRWFLVRAMQHKDDQGTTLK 359

Query: 538 TMLTFVNVTDSVRAERALTEKNEAL 562
              T  ++ D  +AE+ L    E  
Sbjct: 360 WFGTCTDIDDQKQAEQRLKASEENW 384


>gi|144898582|emb|CAM75446.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 822

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 152/380 (40%), Gaps = 20/380 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++    ++  L +V    +++    V +    G ++  NPAF           + G  +
Sbjct: 303 AEIRERQEHEKLARVLRNALEYSGSMVLITDAHGLMEYVNPAFVK---------ATGYDL 353

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQ 537
            +I           +       + ++    R           D     +  +I P+ +  
Sbjct: 354 DDIIGKRPSMLRHPELSPAATGLWSTILACRSWTGMFCNQRKDGTPLWVSATISPVTDDS 413

Query: 538 TMLTFVNVTDSVRA-----ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            ++T     +         E  L E       A   K+ F+  +S+ELR+P+  I+GF  
Sbjct: 414 GVITHFVAVEEDATSRRDGEEELREAKRMAEAASLAKSEFLSSMSHELRTPMNAILGFAQ 473

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +   SL  +Q  Y + I  S   LL+LVNDILD+A ++AG + L++  +  + ++ 
Sbjct: 474 LLTNADNDSLGERQRFYADSILKSGNHLLSLVNDILDMARIEAGRLSLSFERVEPDQVMA 533

Query: 653 EVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           E+   IA       + +     G+   +  AD  RL Q    + SNA+ ++  G TV   
Sbjct: 534 EIIPMIAATAERRKVTLIDEISGRGAPAVEADFTRLKQALINLASNAVKYNRTGGTVRFS 593

Query: 712 AAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
            +  + G    +V + G  IPE     VF  F    A      G G+GL+I +  +   G
Sbjct: 594 ISHGETGPVRIAVSDTGIGIPEKRRTEVFQPFARLGAEASTVEGTGIGLTITKMLVEAMG 653

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   + +   TT    IP
Sbjct: 654 GQIGFFTQENLGTTFWLEIP 673



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 25/157 (15%)

Query: 296 SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDL-AFLATNP 350
           + EI    +      +L N        + I D +  +++ N +FV+    DL   +   P
Sbjct: 302 NAEIRERQEHEKLARVLRNALEYSGSMVLITDAHGLMEYVNPAFVKATGYDLDDIIGKRP 361

Query: 351 SNDELLEFLRSANKLPEQ-LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP- 408
           S     E   +A  L    L  ++W     +               +G  L V  T +P 
Sbjct: 362 SMLRHPELSPAATGLWSTILACRSWTGMFCN------------QRKDGTPLWVSATISPV 409

Query: 409 --RGGTIWMF----ENLTVQVDLETKYNTLVKVQGET 439
               G I  F    E+ T + D E +     ++    
Sbjct: 410 TDDSGVITHFVAVEEDATSRRDGEEELREAKRMAEAA 446


>gi|325955797|ref|YP_004286407.1| putative histidine kinase [Lactobacillus acidophilus 30SC]
 gi|325332362|gb|ADZ06270.1| putative histidine kinase [Lactobacillus acidophilus 30SC]
          Length = 618

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 171/422 (40%), Gaps = 40/422 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K   H+ +G  +  V + SN   G +   F  L+V+++  + + ++  +     + 
Sbjct: 211 EEMQKQALHIADGDYSSQVKIYSNDELGQLGRAFNTLSVRIERSQEESDSERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    +    +E  +     I  +         ++   DL +
Sbjct: 271 HMSDGVLATDRHGNVSVVNQMALNFLNVKEEDVIN-KPIAEVLG-----LKDTSSQDLIS 324

Query: 502 ---AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               I+ + D              + +L  S   +      ++          E+     
Sbjct: 325 SQKEIVVTIDP---------NTRDEMILHASFSLIKRVTGFVSGSVCVLHDVTEQQ---- 371

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K ++ +  FV +VS+ELR+PLT++  + + L        N    +++E     ++
Sbjct: 372 -----KNEDSQKQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNI-APKFLEVTQQETS 425

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-------RIKV 671
            ++ ++ND+L L+ +D G+ K++   + LND +N +       +  +          IK 
Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKR 485

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +      D  +++Q+   I++NA+ +S  G  + ++  ++    I S+ + G  IP
Sbjct: 486 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNKNHVILSISDQGLGIP 545

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P
Sbjct: 546 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605

Query: 790 SK 791
            +
Sbjct: 606 YE 607


>gi|86607271|ref|YP_476034.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab]
 gi|86555813|gb|ABD00771.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab]
          Length = 667

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 157/399 (39%), Gaps = 35/399 (8%)

Query: 408 PRGGTIW----MFENLTVQVD-LETKYNTLVKVQGETID----HLSEGVAVFGPDGRIKL 458
           P GG +      F  +  ++   E +    +      ++     + +   +   + R+ L
Sbjct: 251 PFGGELAQLIDSFNEMAERLQSYEEQNIEELAAAKAKLETLVFSIVDAAILLDAEFRVLL 310

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA   ++  E   +        +     +              I   D E + ++  L
Sbjct: 311 LNPAASRMFGWEGEPVLGKPLPELLPEDLRQQLARPLMQ------IARGDQEAEEIRVNL 364

Query: 519 ELLSDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              +  V+   + P+  P  Q +   V     +  E  L          +E K  F+ ++
Sbjct: 365 SGPTKRVIRILLSPVSDPRRQNLKGIVMTVQDITREVEL----------NEAKAQFISNI 414

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I  F + L          ++  Y+E  +  +  L  LVND+LDL+ +++G
Sbjct: 415 SHELRTPLFSIKSFIETLYEYGEQMSPEERLDYLEIANRETDRLTRLVNDVLDLSRLESG 474

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             + ++  + +  ++ +  ++   +  +  I+++   D  L     +   LLQ+ + +L 
Sbjct: 475 K-QYHFEAVDIAAVIEQTLRTHHLQARDKGIQLRKFVDPDLPLVWGNYDLLLQVMTNLLG 533

Query: 697 NAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           NA+ F+  G  V + A               +V + G  I  +  + +F+RF    +R  
Sbjct: 534 NALKFTPSGGLVTVHAHPVVQADGSPQAVRVAVADTGIGIAPEDQERIFDRFFRVENRVH 593

Query: 751 R-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGL+IV + +  H   + + S  E  +T    +
Sbjct: 594 TLEGTGLGLAIVRNILEKHHTRICLESKLEQGSTFWFDL 632



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 57/177 (32%), Gaps = 16/177 (9%)

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
            + NF + +     G     +++   N   E   + +      +         ++ ++  
Sbjct: 240 TKGNFKQRIDLPFGGE--LAQLIDSFNEMAERLQSYEEQNIEELAAAKAKLETLVFSIVD 297

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           A  + D    +   N +   ++  +   +   P  + L E LR     P           
Sbjct: 298 AAILLDAEFRVLLLNPAASRMFGWEGEPVLGKPLPELLPEDLRQQLARP--------LMQ 349

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETK 428
           I    + +E  +     P  + + ++++           G +   +++T +V+L   
Sbjct: 350 IARGDQEAEEIRVNLSGPTKRVIRILLSPVSDPRRQNLKGIVMTVQDITREVELNEA 406


>gi|298247623|ref|ZP_06971428.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550282|gb|EFH84148.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 775

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/653 (17%), Positives = 237/653 (36%), Gaps = 68/653 (10%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           ++ G+  +  E     ++        + L D++  LVW     G I + N    +  +  
Sbjct: 145 TVGGLTLQFHEVRAPAQRKREDE--IRTLVDAIPQLVWIAGPDGYITYNNQ---RLIDYL 199

Query: 230 GIVFQKAIGES----RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN---KSYKIVRV 282
            +  ++  G+           +  ++   ++       E    L+ G +     + +  V
Sbjct: 200 AMTLEQVEGDGWMVRVHPDDHQRVRQAWQTAIQTGTPYEVEHRLQDGTSEAYHWFLVRGV 259

Query: 283 LNSFGE------AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD----QNRYLQFHN 332
                +       G   ++ ++     Q   + E    L   +         +  L + N
Sbjct: 260 PQRNAQGMILHWVGTCTNIDEQKRTEQQFKESQESFRLLAETVPQLVWTMWSDGRLDYTN 319

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           + + ++ + +L         D+L          PE +           V K+   +++ +
Sbjct: 320 QRYRDVTQANLNLEG-----DDLWRQFVH----PEDIERTL--MLRHQVLKNGNIYENEY 368

Query: 393 HLPNGQT---LHVIVTSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDH 442
            L +G+T      +  + P     G  +  F    ++  Q  +E       + Q   + +
Sbjct: 369 RLRDGRTGEYRWYLARALPVRDEAGQIVKWFGTGTDIDDQKRIEEALRQSQE-QANILMN 427

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-HIRNIAATCSRYYNESDGWDL-F 500
            S          +I  +N  F  +       L  G  +   I     R   +     L  
Sbjct: 428 SSIIGINIIEGEQIVEANDTFLRMTGYTREDLRAGNINWMRITPPEYRALTQQVHQQLTV 487

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              IT ++ E     G            S +P+     +L             A    N 
Sbjct: 488 QQYITPYEKEYVCKDG------------SRLPVLVGAVVLQHFPYQSI-----AFVLDNS 530

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A ++ ++ K++F+   S+EL++PLT +     L +         + +  +  +  S   L
Sbjct: 531 ARKELEQRKDAFISMASHELKTPLTALKMQAQLARKRLERQSPHEAATALSRVEGSIQQL 590

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ ++LD++ + AG ++     + L+ LL+EV  ++      + I   V+    L S 
Sbjct: 591 ERLIGELLDVSKIQAGRLEYLQEIVDLDTLLHEVTDTMQQISTTHTI---VVRGATLCSL 647

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D+ RL Q+F  ++SNA+ +S    TV +  +         V+++G  IP++    +F 
Sbjct: 648 EGDKDRLGQVFINLISNAIKYSPGAETVEIDLSASPEAATIRVRDHGQGIPQEQRDKIFE 707

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF   +   Q+   G+G+GL IV   +  HGG +++ S     +T +  +P K
Sbjct: 708 RFYRVSGPNQKAIPGLGMGLYIVAEIVRHHGGTITVESEVGKGSTFSVTLPLK 760



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 58/431 (13%), Positives = 146/431 (33%), Gaps = 42/431 (9%)

Query: 32  GMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE 91
              +T     + L      L  + +E  +       +  +  +L+       +VW    +
Sbjct: 130 CSPVTRTWLHVYLSPTVGGLTLQFHEVRAPAQ--RKREDEIRTLVDAIPQ--LVWIAGPD 185

Query: 92  TPEIIGQLHQRIDIPQTDTDLLSFENWL---KFHHYIKLSKATEKLRKEGQSFDLVAETQ 148
              I     + ID      + +  + W+       + ++ +A +   + G  +++    Q
Sbjct: 186 G-YITYNNQRLIDYLAMTLEQVEGDGWMVRVHPDDHQRVRQAWQTAIQTGTPYEVEHRLQ 244

Query: 149 NDCA-----IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
           +  +       + G    +   + IL   G  + + E     ++       F++L +++ 
Sbjct: 245 DGTSEAYHWFLVRGVPQRNAQGM-ILHWVGTCTNIDEQKRTEQQFKESQESFRLLAETVP 303

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
            LVW     G + + N  Y+  T+    +    +     +  E+I++ ++    + KN  
Sbjct: 304 QLVWTMWSDGRLDYTNQRYRDVTQANLNLEGDDLWRQF-VHPEDIERTLMLRHQVLKNGN 362

Query: 264 E-----TVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE-- 310
                  +     G  + Y  + + V +  G+     G   D+  +  + + L  + E  
Sbjct: 363 IYENEYRLRDGRTGEYRWYLARALPVRDEAGQIVKWFGTGTDIDDQKRIEEALRQSQEQA 422

Query: 311 -ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
            IL N ++      +   +   N +F+ +       L     N      +      PE  
Sbjct: 423 NILMNSSIIGINIIEGEQIVEANDTFLRMTGYTREDLRAGNIN---WMRITP----PEYR 475

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTIWMFENLTVQVD 424
                     +V +    ++  +   +G  L V+V        P     ++ +N + + +
Sbjct: 476 ALTQQVHQQLTVQQYITPYEKEYVCKDGSRLPVLVGAVVLQHFPYQSIAFVLDN-SARKE 534

Query: 425 LETKYNTLVKV 435
           LE + +  + +
Sbjct: 535 LEQRKDAFISM 545


>gi|313885404|ref|ZP_07819154.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619134|gb|EFR30573.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 618

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 162/388 (41%), Gaps = 31/388 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G        L  +V D +    +  +     + H+ +GV      GR+ L N     L  
Sbjct: 239 GELALTINELADKVKDAQESTESEKQRLDGVLRHMRDGVISTDRRGRVALVNDRALYLLN 298

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-E 527
             + + + G  I  +      Y       DL       F+D    ++ T++ +   +  E
Sbjct: 299 IYQEQ-AIGKSIVELLDLADDY----SVHDLM------FEDHEVKIEKTIKDIQTIIKAE 347

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +S+I             +TD    E           K ++ +  FV +VS+ELR+PLT++
Sbjct: 348 FSVIRRDTGFVTGLVCVLTDVTEQE-----------KTNQERRDFVSNVSHELRTPLTSV 396

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             +++ L    L   +  Q  ++E I   S  ++ +V+++LDL+ +D G + L    +  
Sbjct: 397 KSYSEALLDGALQDTSLAQP-FLEVIQLESNRMIRMVSNLLDLSKIDGGQIILQKDLVDF 455

Query: 648 NDLLNEVKQSIATKMH----ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +++ +   +   +     + N +I      +      D+ R+ Q+   +++NA+ +S 
Sbjct: 456 KRVVDHIVDRMEFTLESGQRDKNYKIVRHYTPRDIYVDIDQDRMTQVIDNLINNAIKYSP 515

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
            G  + +    +    IFSV + G  I +   + +F RF         ++ G GLGL+I 
Sbjct: 516 DGGKITIGLEDNRDSVIFSVSDQGLGISQVDAEHLFERFYRVDKARSREQGGSGLGLAIS 575

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + LHGG + + S +   +T +  +P
Sbjct: 576 KEVVELHGGRIWVESIENEGSTFSFELP 603


>gi|150016429|ref|YP_001308683.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902894|gb|ABR33727.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 613

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 163/393 (41%), Gaps = 14/393 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + E +  +   E       +    +I+     + ++  DG +K  N ++  +      
Sbjct: 189 IILEEEMNERTRTEEALKESERQLRHSIEEAPVPIMLYTEDGFVKKINRSWSDITGYRLE 248

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +   +I+       + ++   LF +     + E         +   +     I  
Sbjct: 249 DIPMISEWADISEAFKEELSSTNIKKLFNSEKRQNNGEFSIRTHDGSIRICNFYSAYIGD 308

Query: 533 LPNAQ--TMLTFVNVTDSVRAERALTEKNEA------LRKADEIKNSFVQHVSYELRSPL 584
           L +     M   ++VT+  R E       E       +++ D I+  F  ++S+ELR+P+
Sbjct: 309 LEDGHKLFMKVAIDVTEKKRMEELQKSVEEERKKLYEIKEYDRIRTEFFSNISHELRTPI 368

Query: 585 TNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           + I     +    LK     + +  + +Y + +  +   +L L+N+I+D+  +D+G   +
Sbjct: 369 SVIFSALQIHELRLKDCIFENRSIDKYKYTKIMKQNCYRILRLINNIIDITKIDSGYFNI 428

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N   I +  L+  +  S+A  +    + +   ++ +      D +++ +I   ILSNA+ 
Sbjct: 429 NEHNIDIIALIENITLSVADYIENKGLSLIFDTNVEEKIMSCDPEKIERIILNILSNAVK 488

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGL 758
           F+S G  + +            +K+ G  IP+D   S+F RF+           G G+GL
Sbjct: 489 FTSSGGKITVSIEDCYDKICIKIKDTGRGIPQDKLNSIFERFIQVDKSLARDHEGSGIGL 548

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           S+V+S + LHGG +S+ S     T     IP K
Sbjct: 549 SLVKSLVELHGGVISVKSKINYGTEFVIYIPCK 581


>gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
 gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
          Length = 1364

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/545 (18%), Positives = 200/545 (36%), Gaps = 75/545 (13%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  +  Q+     ++ N + AI     +  +   N +   ++           S++E +
Sbjct: 342 REEVLRKQME-LAALVSNSSEAIVAETPDGRITHWNPAAETMFGY---------SSEEAI 391

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETH------KDTWHLPNGQTLHVIVTSNP-- 408
               +   LP+          +  V    E H             +   ++++ +  P  
Sbjct: 392 GRTLATLLLPQPY-------AVPEVEHPDEPHPVMTSAAQIMRHRDSHAVYLLASKAPIL 444

Query: 409 -----RGGTIWMFENLTVQVDLETKYNTLVK------------------VQGETIDHLSE 445
                  G    F +++ +V    +   L                    +Q   + H   
Sbjct: 445 EGDDTLTGHSHFFRDISERVRSHQRIVELNASLEHQVAERTSELVKFSALQRAILAHAGY 504

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLF 500
            +      G + L NPA   L   +   +                  +R   +  G  + 
Sbjct: 505 AIIATDSSGFVTLFNPAAEKLLGYKAEEVIGRRKASQFIEPEELQERARMLADQTGTPVA 564

Query: 501 AAI--ITSFDDERKSLQGTLELLSDS------VLEYSIIPLPNAQT---MLTFVNVTDSV 549
             +  + +     +S       +S        +L  S +   N Q    +   V++T+  
Sbjct: 565 QTLEAVAALTSLGRSDTSEWTYVSHEGRHLPVLLTLSTLRDDNDQVIGYLGVAVDLTEQK 624

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E+ L    +A + A++ K+ F+ ++S+E+R+P+  I+G   LL+ S+   L       
Sbjct: 625 LHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSE---LPVAALDM 681

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  S+  LL ++NDILD + ++AG + L  +   LN L + +   + + +    + +
Sbjct: 682 VAKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEM 741

Query: 670 KVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSV 723
            V          + D  R+ Q+   ++ NA+ F+ +G  V+      +GD      +FSV
Sbjct: 742 IVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKLKLLFSV 801

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I ++    +F+ F+       RR  G GLGL+I    I L GG + + S     
Sbjct: 802 RDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRG 861

Query: 782 TTINC 786
           +    
Sbjct: 862 SEFYF 866


>gi|168177679|ref|ZP_02612343.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671415|gb|EDT83389.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 615

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 168/393 (42%), Gaps = 20/393 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + +  N   Q +++ +    + ++ E      I +  + + V    G+I  +N   + + 
Sbjct: 198 VNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILV-HRYGKIIFANERLKQML 256

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             ++        I+++         +    +L+    +  +D  K     +     ++  
Sbjct: 257 GYKKEYNFEDIDIKSLIPEDQYNIVKDQLKNLY----SGSEDIVKFQHNVINNKGKTIQN 312

Query: 528 YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYE 579
            S   + +        +    +     + E+ + +  E L +    +++   F+ ++S+E
Sbjct: 313 TSTYVIYDGIPTIFSILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHE 372

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++PL  I     LL   +    N KQ +Y++ I  +   L+ L+N++LD   +D+G +K
Sbjct: 373 LKTPLNVIFTAVQLLGFYEEDCNNEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLK 432

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           LN     + +L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSN++
Sbjct: 433 LNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSI 492

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
            F++ G  + +       +    VK+ G  IP D  +S+F RF          + G G+G
Sbjct: 493 KFTNPGGNIFVNVKDSGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIG 552

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L +V+SF+ +H G V+I S     T    ++P+
Sbjct: 553 LHLVKSFVEMHNGTVTIKSELGKGTEFIIKLPA 585


>gi|320354602|ref|YP_004195941.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123104|gb|ADW18650.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1058

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 151/376 (40%), Gaps = 14/376 (3%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +               ++  +E V  + P G I  +N AF   +    ++L      + +
Sbjct: 371 EQNRAMQASEARYRAIVEDQTELVCRYLPTGDITFANEAFCRYFDRPRDQLDGVDCRQML 430

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           +                A  +   +       G +  L  +            +      
Sbjct: 431 SPDNPEAALRLLDTLCPAHPVARSEHRLVRPDGEIRWLHWTNRAIFDDRGNLVEYAGVGH 490

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  +   AL    E    A+  K+ F+ ++S+E+R+PL  IIG T L   ++    +
Sbjct: 491 DVTERKQTAEALLRTKEEAEAANRAKSRFLANMSHEIRTPLNAIIGMTHLAMHTR---ED 547

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+ +++  ++ ++  LL L+NDILD++ ++AG + L         L+     ++A +  
Sbjct: 548 DKRQRFLATVAHAADSLLGLLNDILDISKMEAGQLSLATEPFDPRRLVEASVATLAAQAS 607

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARD 715
           E  + +++     L    + D  RL QI   +L NA+ F+  G T+ L       + A +
Sbjct: 608 EKGLDLRLHLGPALPDCLLGDALRLRQILLNLLGNAVKFTPAG-TITLEAFAEEAEDADN 666

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  IP +  + +FNRF    +    Q  G GLGLSI      L  G + 
Sbjct: 667 RVYLHLRVTDTGIGIPAEKLELIFNRFEQADNSYGRQYGGAGLGLSISAQLAALMHGRLW 726

Query: 774 ISSSDEGVTTINCRIP 789
             S +   +T +C IP
Sbjct: 727 AESRENQGSTFHCLIP 742


>gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
 gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
          Length = 875

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 158/373 (42%), Gaps = 34/373 (9%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHI------R 481
                +   E + H    V +    D  I  +NP +  ++K EE  L   T +       
Sbjct: 15  LKDFEEDTLEILRHSPVAVRMMRVSDRHITFANPRYMEMFKVEEKDLQTLTPLQVYQNKE 74

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +  +   R   + +  D   A+        K+L G L  +  S   + +  L  +  +  
Sbjct: 75  DFESLSVRINAQENIVDEVLAM--------KTLTGELLQVMGSF--HHMKYLDQSMVVAW 124

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T + +A++   +         ++K+ F+ ++S+E+R+P+  IIG + L   +    
Sbjct: 125 FYDITAAHQAKQLAEDAA-------KMKSEFLANMSHEIRTPMNGIIGMSHLALKT---D 174

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q  YV+ I  +   LL ++NDILD + ++AG + +   T  ++++++ +   I  K
Sbjct: 175 LDPRQRDYVKKIQQAGKHLLGIINDILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQK 234

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             E N+ +       L    + D  RL QI     +NA+ F+ KG  +I     +  D  
Sbjct: 235 CSEKNLELIFHFPQDLPHKLIGDPLRLSQILINYGNNAIKFTEKGEVIISAEILERDDEG 294

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
               F+V + G  + ++    +F  F        R   G GLGL+I +    L GG V +
Sbjct: 295 IFIKFNVSDTGIGLTKEQKSKLFQSFQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGV 354

Query: 775 SSSDEGVTTINCR 787
            S     +T    
Sbjct: 355 ESEYGKGSTFWFT 367



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 60/155 (38%), Gaps = 17/155 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAI-AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
             + D    T EIL +  VA+  +   +R++ F N  ++E+++++   L T         
Sbjct: 13  ELLKDFEEDTLEILRHSPVAVRMMRVSDRHITFANPRYMEMFKVEEKDLQT--------- 63

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRGGT 412
            L        + ++++    I +  ++            G+ L V+ + +      +   
Sbjct: 64  -LTPLQVYQNKEDFESLSVRI-NAQENIVDEVLAMKTLTGELLQVMGSFHHMKYLDQSMV 121

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +  F ++T     +       K++ E + ++S  +
Sbjct: 122 VAWFYDITAAHQAKQLAEDAAKMKSEFLANMSHEI 156


>gi|83591310|ref|YP_431319.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83574224|gb|ABC20776.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 489

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 156/394 (39%), Gaps = 26/394 (6%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIK 457
            V + S+   G +    N+ V+  L   +  +   +      +  +++G+      GR+ 
Sbjct: 100 RVEIQSDDEVGLLSHHLNIMVE-TLRNNFREIADERNKMKAILASITDGLVAVDQVGRVI 158

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           + NPA   ++  +   +     ++ +     R +          A     ++E +    T
Sbjct: 159 MLNPAAEKMFGKKGAEVEHKYLLKVV-----RNHEIDAMVKEILASGLPLENEVRLFPTT 213

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            +L        +         +LT  ++TD  R E              +++  FV +VS
Sbjct: 214 SQLFRIYGTPITSEQGRIIGAVLTIRDITDIRRLE--------------QMRTEFVANVS 259

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT+I GF + L    L        +++  I+  +  L  L+ D+L L+ +++  
Sbjct: 260 HELRTPLTSIRGFVETLLEGALED-PEVSRRFLGIINHEAQRLQQLIEDLLSLSRLESQP 318

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            + +     L   L+ V  ++     E  + ++     ++         L Q+   ++ N
Sbjct: 319 KRQDAGRADLAATLDRVLTTVNQLAREKGVALEKEIPAEIPELAISESYLNQVLLNLIDN 378

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
            + ++  G  V ++AAR        V + G  IP +    VF RF         +  G G
Sbjct: 379 GIKYTPAGGRVTIRAARLGELVQVEVADTGIGIPPESLPRVFERFYRVDKARSREMGGTG 438

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+IV+  +  HGG +S++S     +     +P
Sbjct: 439 LGLAIVKHIVESHGGSISVTSRPGQGSHFFFTLP 472


>gi|309806454|ref|ZP_07700459.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167127|gb|EFO69301.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
          Length = 612

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 175/416 (42%), Gaps = 30/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWMFENL-TVQVDLETKY-NTLVKVQGETID 441
            E       + NG  + HV V +N   G +    N+ +V+++   +  ++  +     + 
Sbjct: 208 EEMKDQALRISNGDYSGHVKVYANDEMGELARAFNILSVRIERSQEVSDSERRRLDNVLM 267

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N    +     EN +  G  I  +         E    DL +
Sbjct: 268 HMTDGVIATDRHGNITIINETALNFLDKTENEVK-GEPITQLLG-----LKEVTIQDLMS 321

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                      +    L L +D  L   +    +    +              L +  E 
Sbjct: 322 TQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICV--------------LHDITEQ 367

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            +  +E +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++
Sbjct: 368 QKNENEQR-QFVSNVSHELRTPLTSLRAYVEALNDGAWKNENI-APQFLGVIQNETERMI 425

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI---RIKVISDGKLG 678
            ++ND+L+L+ +D G++K++   + LND L+ +       +  + +   +I+ I   +  
Sbjct: 426 RMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQAL 485

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  +++Q+   I++NA+ +S  G  + ++  + +   I S+ + G  IP      +
Sbjct: 486 WVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRKDLSRI 545

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF         ++ G GLGL+I +  +  H G +   SS+   +T    IP ++
Sbjct: 546 FDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEK 601


>gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 718

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 159/382 (41%), Gaps = 28/382 (7%)

Query: 423 VDLETKYNTLVKV---QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +     Y  L++     G+    +  G+ +    GR+   NPA+  +W    + +    +
Sbjct: 342 LRRALHYQQLLETSAHLGQVFASMPNGLVLMDQQGRVLRHNPAWLMIWGLTPDAMRDPFY 401

Query: 480 IRNIAATCSR-YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           I             +        A       E +SL   L      V+  S     +  +
Sbjct: 402 IPLDLVPLLLPRMRDPLALTELCAEGQRSPTEVQSLLVRLNNPHQEVMLLSAPTRDSFGS 461

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   + +   V  ER           AD +K+ F+  VS+ELR+PLT+I+G+T+LL    
Sbjct: 462 LTGRLWIVSDVTRERE----------ADRLKSEFLSIVSHELRTPLTSIMGYTELLLARD 511

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 +Q ++V+ +   +  L  +V D+L +  ++AG ++L+   + L  +++++   +
Sbjct: 512 FTP--GEQREFVKTVYNEANHLYQIVEDLLGVTRLEAGNVRLDRWAVSLRQIISDLTAHL 569

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--- 715
           + ++   +  + +     L    ADR ++ Q+   +++NA+ +S  G  + L        
Sbjct: 570 SNQISGKHTML-IDIPPYLPPVYADRDKVRQVLVNLITNAVKYSPNGGEIRLTVTEHADL 628

Query: 716 ------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                     + ++ + G  I  +    ++ RF    +   RR  G GLGLSI ++ + L
Sbjct: 629 PPDHPKGQFVLVAISDQGIGIAPEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVEL 688

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +   S     +T +  +P
Sbjct: 689 HGGRIWAESKLNRGSTFSFTLP 710



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 88/288 (30%), Gaps = 32/288 (11%)

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
            A+   G  +G+ A +     D    EL       +             ++     W   
Sbjct: 214 WALDATGAEAGAIALV-----DRERGEL--VLHAYEGYGGDPLNRDAFGEARRRWSWEVG 266

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
            AG +          T    ++   +     + F  E++  + +    +      V  L+
Sbjct: 267 VAGKV--------ARTGRATLLRDVSRDPDYRAFAPEVRAELAAPIGADPPLA--VLLLD 316

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNR 326
              + ++    V        +A++  +      QL     H  ++  ++   + + DQ  
Sbjct: 317 SPRSVAFGESEVAFVDALCHLAVNPLRRALHYQQLLETSAHLGQVFASMPNGLVLMDQQG 376

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            +  HN +++ +W +    +   P    L        ++    +     E      +S  
Sbjct: 377 RVLRHNPAWLMIWGLTPDAMRD-PFYIPLDLVPLLLPRM---RDPLALTELCAEGQRSPT 432

Query: 387 THKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLET 427
             +      N     V++ S P         G +W+  ++T + + + 
Sbjct: 433 EVQSLLVRLNNPHQEVMLLSAPTRDSFGSLTGRLWIVSDVTREREADR 480


>gi|281208514|gb|EFA82690.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1105

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 26/355 (7%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV      G +  +N A  S+       L  G                 + +++ A  + 
Sbjct: 433 GVMFSTLKGLVMDANDALLSIIGYSRQDLEQGK-------VDWMLITPPEYFEISARALQ 485

Query: 506 SFDDER--KSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
               +R  + ++      +   +   I   + +         V D  R  +A     E+ 
Sbjct: 486 ELKAKRWCQPIEKAYFHKNGKKVPILITAAMVDGSDEQCITFVFDLSRYRQA----EESA 541

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            KA ++K+ F+ ++S+ELR+P   I+G T LL  S    L   Q    E I  S   L+N
Sbjct: 542 IKATKLKSQFIANISHELRTPCHGILGMTQLLLDS---GLTPNQRDSAETIKRSIDGLIN 598

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS---DGKLGS 679
           L+NDILD + ++AG + L      L  ++ EV        ++  I +  I          
Sbjct: 599 LINDILDFSKIEAGKLTLEIVEFELISIVEEVLNLQGELANKKGIDLIFIIGRQSPVPPM 658

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMC 735
              D + + Q+   ++ NA+ F+  G  V+ +    ++GD     FSVK+ G  IP+ + 
Sbjct: 659 LYGDSRFIRQVLINLVHNALKFTESGHVVLEISTEYESGDQVSLRFSVKDTGIGIPDSVS 718

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +F  F  V  +   +  G GLGLSI    + L GG++S  S     +     +
Sbjct: 719 EQLFQPFSQVDGSSSRKYGGTGLGLSICRDLVGLMGGNISYESKVGKGSCFWFSL 773


>gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW]
 gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW]
          Length = 878

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 153/394 (38%), Gaps = 47/394 (11%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRNIAAT--CSRYYNESDGW 497
           D + +G  V+  + R+   N  F              G    ++      +R   + + +
Sbjct: 220 DAMPDGFVVYDAEDRLVTWNDRFLERYPSLRGVPALKGMRFEDLLRIFIANREIGDPEAY 279

Query: 498 DLFAAIITSFDDERKSLQGT-LELLS--DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           D     I      R+S  G   E L+     L  S  P+     +    ++T     E  
Sbjct: 280 DDTERWIAERLAWRRSADGRAFERLTAHGHWLRVSEHPISTGGVLSLATDITAQKMREEE 339

Query: 555 LTEKNEALRKA-----------------------------------DEIKNSFVQHVSYE 579
           L    E + +A                                   +  K+ FV  +S+E
Sbjct: 340 LRRALEDVDEARREAELQAAEMVALAEELAAARTRADEARAESEAANRAKSDFVAVMSHE 399

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  ++GF DLL  +    L ++Q ++V     +   LL +V+D+LD + ++AG ++
Sbjct: 400 VRTPLNALLGFADLLLQT---PLTAEQREWVTLQREAGEALLTVVSDVLDFSKLEAGRLE 456

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
           ++     L  L       +     E  + ++V  D +L   V  D +R+ Q+   +L+NA
Sbjct: 457 VDPHPFQLARLARSTSDLVRPTAEERGLALRVAVDPRLPEVVQGDAKRVRQVLLNLLNNA 516

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           + F+ +G   +      +G   F V + G  I  +  + +F  FV       RR  G GL
Sbjct: 517 VKFTERGHVALAVFPVADGRVRFEVLDTGIGIAPEQQERLFQEFVQADRATARRYGGTGL 576

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GL+I    ++L GG + + S+    +     +P 
Sbjct: 577 GLAICRRLVDLMGGAIGVESAPGRGSLFWFELPL 610



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 102/356 (28%), Gaps = 37/356 (10%)

Query: 112 LLSFE--NWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRIL 169
           LL+F    W+   H        + +R +      +  T +     +    +G   +L  L
Sbjct: 4   LLAFGAGTWVAARH----DAGLDLIRSDADRAATIERTISAMREALRDLETGERGYLGSL 59

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD--------FLVWHRDQAGDILWANIS 221
                  ELA      + L    +  +   D             V    QA     A   
Sbjct: 60  DPS--RLELARRG--HETLDALAADLEASLDGRPGQQEQAAEIPVLTDRQAAVFEAAAAL 115

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
            +    T+ +      G+   +     +   + + A E         + +       +  
Sbjct: 116 ARAGRLTDALATFDGEGDRSSIHAIHGRLDSLLADAHEHLRNRQTEAVTYAELLVDWLSA 175

Query: 282 VLNSFGEAGIAIDVSKEITVNDQ--------------LTHTYEILHNLTVAIAIFDQNRY 327
            +   G  G A+ V+  +T   Q                     L  +     ++D    
Sbjct: 176 GVALSG-LGFAVAVAVLLTARRQGRELAAAQRRAAEAEERLRAALDAMPDGFVVYDAEDR 234

Query: 328 LQFHNRSFVELW-EIDLAFLATNPSNDELLEFLRSANKLPEQLNW---KTWKENIFSVYK 383
           L   N  F+E +  +           ++LL    +  ++ +   +   + W     +  +
Sbjct: 235 LVTWNDRFLERYPSLRGVPALKGMRFEDLLRIFIANREIGDPEAYDDTERWIAERLAWRR 294

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           S++         +G  L V       GG + +  ++T Q   E +    ++   E 
Sbjct: 295 SADGRAFERLTAHGHWLRVSEHPISTGGVLSLATDITAQKMREEELRRALEDVDEA 350


>gi|325960004|ref|YP_004291470.1| multi-sensor signal transduction histidine kinase [Methanobacterium
            sp. AL-21]
 gi|325331436|gb|ADZ10498.1| multi-sensor signal transduction histidine kinase [Methanobacterium
            sp. AL-21]
          Length = 1077

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/795 (15%), Positives = 266/795 (33%), Gaps = 99/795 (12%)

Query: 66   CDQLSKYHSLLTENNCLTIVWDGKDET------PEIIGQLHQRIDIPQTDTDLLSFENWL 119
               L +  +LL  +      W+  D         E +        I     DL      L
Sbjct: 297  EADLKRQAALLDVSYEAIFSWEYDDGIISWNVGAEKLYGFSNEEAIGHVSHDL------L 350

Query: 120  KFHHYIKLSKATEKLRKEGQ-SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
            K +  I+     + L+K G  + +L+  T++   I +E R      F   L +     ++
Sbjct: 351  KTNFPIEFKDFLKILKKNGNWAGELIHTTRDGRLIVVESRQQLIKDFSGKLIVIETNRDI 410

Query: 179  AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
             +     + L +    ++ + D+L       D  G I   + S       +     K IG
Sbjct: 411  TQRKKMEQLLKDSEEKYRTILDNLQDAYIQADSNGIITMVSPSAASMYNYDSPN--KMIG 468

Query: 239  ESRKLF--KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GE 288
               K     +  +  ++ +     N  +  S     +  ++ +               G 
Sbjct: 469  NYIKNLYKNQLDRDDLLENLEKLGNVEDYESVALRKDGTTFDVSLNSQFLYDNEGQIQGT 528

Query: 289  AGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
                 D+++       L        +++ +++  I   D +    F N +       + +
Sbjct: 529  EVFVRDITERKNAEKALRVSEQRISDMIESISDYIYAIDSDWNFIFVNETAANDVGYESS 588

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-HVI 403
             L        +           +++     + N        E     W      +     
Sbjct: 589  ELLGKNIWSAV-----------DKVVGTELETNFREAMDKREIKLFDWETVYTDSYKEFT 637

Query: 404  VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
            V  +  G T++  +++T +   E +     +     ++     V +   DG I   N   
Sbjct: 638  VYPSAEGITVY-GKDITKRKKAEKQLKIENERLETILETNPSAVIIVEADGNISYINQRA 696

Query: 464  RSLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            + ++      +   T I  + A     +     +   G  L   ++ + +   +   GT+
Sbjct: 697  KDIYGINITGMDLSTAIAKVKAKKIDGSEYSVGDGPTGRALKGQMVRNEEMILEQPDGTV 756

Query: 519  ---------------ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
                           +++S  V+   I  +   +     +   +    E       E   
Sbjct: 757  IPILGSAAPIYNLENQIISAVVIFDDITQIKQEEWRKQKMLEKEQQLTEELSATNEELQA 816

Query: 564  KADEIKN---------------------------SFVQHVSYELRSPLTNIIGFTDLLKT 596
              +E+K                             F    S++L+ PL  +  FT LL+ 
Sbjct: 817  TTEELKTSNEDLILAQNSLMEMVTKLKTSNKELEQFAYVASHDLQEPLRMVASFTQLLER 876

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                 L+   + Y+++I   +  + +L++D+L  + ++  + K     + +   L++V  
Sbjct: 877  RYKNHLDDDANDYIDFIVEGAQRMKDLIDDLLAFSRLNTEVHKFEPILVEVA--LDDVSF 934

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF---SSKGSTVILKAA 713
            ++ + + ENN  I       L +   D  ++ Q+F  ++SNA+ F   +     + + A 
Sbjct: 935  NLKSSIEENNATITYD---PLPTINGDPSQIRQLFQNLISNAIKFHGDTPP--KIHVSAQ 989

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              + + IF V +NG  I ++  + +F+ F     R    G G+GL+I +  +  HGG + 
Sbjct: 990  ELDDECIFGVTDNGIGINQNHQEQIFSIFKRLHTRKDYEGTGIGLAICKRIVERHGGKIW 1049

Query: 774  ISSSDEGVTTINCRI 788
            + S +   +T    I
Sbjct: 1050 VESEEGNGSTFYFTI 1064



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 134/417 (32%), Gaps = 47/417 (11%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGIVFQKAIGES 240
           ++          + +            G +   N ++++ T     E   I +  A+   
Sbjct: 171 REARKEKEFLANILEHSSQPFAIGFPDGRLGLFNHAFEELTGYTKQELNTIDWSDALTP- 229

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVL-----NSFGEAGIAID 294
            +  ++E +K        +    E     + G+    ++ V +      N         D
Sbjct: 230 VEWREKESQKLDELHRTGQPVRYEKEYVRKDGSRVPIELFVDINMAADGNPEFYYSFISD 289

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           ++K       L     +L     AI  ++ +  +   N    +L+         + S+D 
Sbjct: 290 ITKRQKDEADLKRQAALLDVSYEAIFSWEYDDGIISWNVGAEKLYGFSNEEAIGHVSHDL 349

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTS---NPR 409
           L            + N+    ++   + K +     +      +G+ + V          
Sbjct: 350 L------------KTNFPIEFKDFLKILKKNGNWAGELIHTTRDGRLIVVESRQQLIKDF 397

Query: 410 GGTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            G + + E   ++T +  +E       +     +D+L +       +G I + +P+  S+
Sbjct: 398 SGKLIVIETNRDITQRKKMEQLLKDSEEKYRTILDNLQDAYIQADSNGIITMVSPSAASM 457

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +  +      G +I+N+      Y N+ D  DL   +    + E    +        +  
Sbjct: 458 YNYDSPNKMIGNYIKNL------YKNQLDRDDLLENLEKLGNVE--DYESVALRKDGTTF 509

Query: 527 EYSIIPL-------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           + S+              T +   ++T+   AE+AL    + +    E  + ++  +
Sbjct: 510 DVSLNSQFLYDNEGQIQGTEVFVRDITERKNAEKALRVSEQRISDMIESISDYIYAI 566


>gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
 gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
          Length = 1053

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 156/379 (41%), Gaps = 19/379 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +     ++    I+     VA+    G I L N    + +            +
Sbjct: 147 EIAKRTKELAVSEELSRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGYTAEEALGQPLL 206

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDD-----ERKSLQGTLELLSDSVLEYSIIPLPN 535
             +          +    L A      ++     E  +  GTL  +    L  SI  L  
Sbjct: 207 TLLKMALPPELAAALTLPLRAEQQQLLNEAFYEAETYTRDGTLVPID---LGVSIFELNG 263

Query: 536 A-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q  +   +VT    AE+ L E      +A E+K+ F+ ++S+E+R+P+  IIG + L 
Sbjct: 264 QCQAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLA 323

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L  KQ  YV  I +S+T+LL ++NDILD + ++AG + + +    L ++L+ V
Sbjct: 324 LKTE---LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNV 380

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
                 K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G   V ++ 
Sbjct: 381 SMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQV 440

Query: 713 ARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                     +F+V + G  + E   +++F  F        R   G GLGLSI    + L
Sbjct: 441 GERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVEL 500

Query: 768 HGGHVSISSSDEGVTTINC 786
             G +S++S  +  +    
Sbjct: 501 MEGEISVTSKPDAGSCFTF 519



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 11/151 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +KE+ V+++L+ T  I+     ++AI D    +   N++ +  +          P    L
Sbjct: 152 TKELAVSEELSRT--IIEGAPSSVAIIDSQGLILLWNKTAITTYGYTAEEALGQPLLTLL 209

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRG 410
              L         L  +  ++ + +       ++   +  +G  + +     I   N + 
Sbjct: 210 KMALPPELAAALTLPLRAEQQQLLN----EAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
                  ++T +   E + N       E ++
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVE 296


>gi|261406014|ref|YP_003242255.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261282477|gb|ACX64448.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 477

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 169/415 (40%), Gaps = 29/415 (6%)

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLS 444
           E   D      G  L+++ TS+  G     F ++  +++   +  N   +     +  +S
Sbjct: 79  EAANDIRKGKYGTRLNLV-TSDEIGELANTFNHMAAELETNIRNLNHEKEHLSSVLRSMS 137

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           + V  F   G++ L NP    + KT    L     ++      +         +L+ A +
Sbjct: 138 DAVITFDNHGQVILVNPPGLEIMKTW-KGLQWDDELQ--GGGWAADVMPKPLSELYYATV 194

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
               D+   L      +   +    + PL +   +   V V   +  +  L         
Sbjct: 195 NEGKDQSADLH-----VKQGIWSAHMAPLYSDDVIRGAVVVLRDITEQVTL--------- 240

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            ++++  F+ +VS+E+R+PL+ + G+++ L      S   +  + ++ I   S  +  LV
Sbjct: 241 -EKMRTDFIANVSHEIRTPLSMMQGYSEALLDGMAAS-PEESRELIQVIHEESLRMGRLV 298

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVAD 683
            D+LDL  ++AG  +L+   +   +L   V +  A +  E +I +++      L    AD
Sbjct: 299 KDLLDLTRMEAGHAELSLREMDAGELCERVFRKFAVRAKERDIDLQLNKLHSNLQLEAAD 358

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVF 739
             +L Q+ + +L NA   +  G  + + A R    +       V + G  IP +    VF
Sbjct: 359 EDKLEQVLTNLLDNAFRHTPSGKKIQITADRIALSNTEALQVKVCDQGVGIPPEDLPFVF 418

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF        R    G G+GL+IV++ +  H G ++ +S     T     IP+K
Sbjct: 419 ERFYKADKARVRGETVGTGIGLAIVKNIVTAHHGTINATSEVGKGTVFTMTIPTK 473



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 84/246 (34%), Gaps = 38/246 (15%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    +N +  H   +L +++ A+  FD +  +   N   +E+ +    +      +DEL
Sbjct: 117 TNIRNLNHEKEHLSSVLRSMSDAVITFDNHGQVILVNPPGLEIMK---TWKGLQ-WDDEL 172

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPRGGT 412
                +A+ +P+ L      E  ++     +      H+  G     +  + + +   G 
Sbjct: 173 QGGGWAADVMPKPL-----SELYYATVNEGKDQSADLHVKQGIWSAHMAPLYSDDVIRGA 227

Query: 413 IWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + +  ++T QV LE            +  T + +     + L +G+A    + R      
Sbjct: 228 VVVLRDITEQVTLEKMRTDFIANVSHEIRTPLSMMQGYSEALLDGMAASPEESR------ 281

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRY-------YNESDGWDLFAAIITSFDDERKSL 514
               +    E  L  G  ++++                E D  +L   +   F    K  
Sbjct: 282 --ELIQVIHEESLRMGRLVKDLLDLTRMEAGHAELSLREMDAGELCERVFRKFAVRAKER 339

Query: 515 QGTLEL 520
              L+L
Sbjct: 340 DIDLQL 345


>gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/580 (15%), Positives = 200/580 (34%), Gaps = 30/580 (5%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-KSYKIVRV 282
            + +      +K +      F + ++ R +    +           + G   +       
Sbjct: 73  DDLKATTENLEKHLANPDHPFDQVVRYRHLKGHTVWVRCRGLAIRDKQGRPIRMLGAHND 132

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVEL 338
           +  + +  +A++   + T+         ++ NL   + I+    D    +   +++  +L
Sbjct: 133 ITEYKQQQLALE-EAQATLRQSEDKYRTLVENLP--VLIYRSEVDAPWAMLHASQNAEQL 189

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD---TWHLP 395
                    +      +   +     L E       K       +    H+     W   
Sbjct: 190 CGYSSDEFLSG-QLTWVDVIVAEDLPLVEAAVQHAIKAREKYTVEYRIRHQKGHVIWVSE 248

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDG 454
            G         +P      +  ++T +V  + + +          +    G+A+     G
Sbjct: 249 TGSAQDYDQNGHP-AYLDGVIADITDRVQAQKEISAQEAKFRGLFELSPVGIAMNDFATG 307

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
                N A               ++                           F+ E    
Sbjct: 308 EFLEFNAAVNEPAGYTPEEFKQLSYFDVTPMEYMEDEKRQLESMEKIGRYGPFEKEYIRK 367

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G+   +   +L       P  +T++  +    S      + +  EA   A+  K+ F+ 
Sbjct: 368 DGSRYPV---LLNGFKTTTPEGKTVIWSIIQDIS-----EIKKAQEAAEAANRSKSEFLA 419

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG   L   S+      +   Y+E I+ S+  LL L+NDILD + ++
Sbjct: 420 NMSHEIRTPMNAIIGLGQLALKSQ-PPPPPRLYDYLEKITGSAATLLTLINDILDFSKIE 478

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693
           AG + ++     L+++LN++   +A +  E  + +    D  +    V D  RL Q+   
Sbjct: 479 AGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDPTVPRLLVGDPHRLGQVLIN 538

Query: 694 ILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--H 747
           + +NA+ F+  G   I    +    +      +V++ G  +  +  + +F  F       
Sbjct: 539 LTANAIKFTETGEVTISFEVVDPTAEPLTLRVAVRDTGIGMSPEQIERIFQPFTQADGAT 598

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +  G GLGLSI    + L GG + + S+    +T +  
Sbjct: 599 TRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638


>gi|84687780|ref|ZP_01015651.1| sensor histidine kinase/response regulator [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664216|gb|EAQ10709.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2654]
          Length = 600

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/390 (24%), Positives = 175/390 (44%), Gaps = 33/390 (8%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            E  TV+VD+  +          +I+ + +G AVF  + R+ ++NPA+ + +   E  + 
Sbjct: 60  LERKTVEVDIAKR------RLWSSIETVEDGFAVFDAESRLVIANPAYYAPFDGLEC-IR 112

Query: 476 PGTHIRNIAATC---------SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           PG H   I              R   E   W L      + +  +      + L + + L
Sbjct: 113 PGAHYEEIVEAALSEGIVDIGERTVPEWRDWMLERWATDAPEPRQ------IRLWNGAYL 166

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                  P   T+   ++VT ++R + AL         A   K++F+ ++S+E+R+P+  
Sbjct: 167 RLVDRRAPGGDTVSMAMDVTQAIRRQDALRAARARAEAASRAKSAFLANMSHEIRTPMNG 226

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G  DL+       L+ + + YV+ I +S   LL ++ND+LD + ++A  ++L+     
Sbjct: 227 VVGMADLMAEH---DLDEEMASYVDTIRSSGRALLTIINDVLDYSKIEAAKLELHLEPFD 283

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L   + +V   +   + E  ++I +  D  L + +  D  R+ QI + ++ NA+ F++KG
Sbjct: 284 LEQTILDVIALVMPSIREKGLKIMLDVDMFLPTRYEGDPVRVRQILTNLIGNAVKFTAKG 343

Query: 706 ST-VILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGL 758
              V +    D GD       +V++ G  IP DM   VF  F  V +       G GLGL
Sbjct: 344 HILVRVIGMPDGGDARQRVHVTVEDTGIGIPRDMQDHVFGEFNQVEDERNRSFEGTGLGL 403

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I    ++L  G V + S +   +     +
Sbjct: 404 AITRQLVSLMLGEVWVESEEGIGSCFGFAL 433



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 48/128 (37%), Gaps = 2/128 (1%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           K + V+      +  +  +    A+FD    L   N ++   ++  L  +      +E++
Sbjct: 63  KTVEVDIAKRRLWSSIETVEDGFAVFDAESRLVIANPAYYAPFD-GLECIRPGAHYEEIV 121

Query: 357 EFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           E   S   +   +     W++ +   + +         L NG  L ++    P G T+ M
Sbjct: 122 EAALSEGIVDIGERTVPEWRDWMLERWATDAPEPRQIRLWNGAYLRLVDRRAPGGDTVSM 181

Query: 416 FENLTVQV 423
             ++T  +
Sbjct: 182 AMDVTQAI 189


>gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
 gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
          Length = 2241

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R L +      KA++ K++F+ ++S+E+R+P+  +IG + LL  +   +L++KQ  Y + 
Sbjct: 1479 RELNQARLTAIKANQSKSNFLANMSHEIRTPMNGVIGLSQLLLKT---NLDNKQKNYAKK 1535

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S+  LL ++NDILD + ++ G M L  +   L  L+  V      + H  ++ + V 
Sbjct: 1536 TLESANSLLTIINDILDFSKIEVGKMTLEEAPFNLEQLVKRVTTICELRAHTKDLELIVD 1595

Query: 673  SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------LKAARDNGDFIFSVK 724
                +  + + D  RL QI   + SNA+ F+  G  +I       ++    +      V+
Sbjct: 1596 ISPNIPFNLIGDALRLEQILLNLTSNAVKFTKSGHVIIRVQSLNEVEIDDMHVQLNIEVE 1655

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  I E  C  +F  F        R   G GLGL+I +  + L  G + + S     +
Sbjct: 1656 DTGIGISEQQCALLFESFTQANDSITREFGGTGLGLAICKQLVELMQGQIQVRSQPNIGS 1715

Query: 783  TINCRI 788
            T + +I
Sbjct: 1716 TFSLKI 1721


>gi|217963901|ref|YP_002349579.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290892107|ref|ZP_06555103.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|217333171|gb|ACK38965.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290558230|gb|EFD91748.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|307571529|emb|CAR84708.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 596

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 166/400 (41%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I    +   N++               E+K  Q   
Sbjct: 281 SNPPAEEFLHNWFFSPENTEKVL-IPVALNELLNDTL--------------EKKESQVGE 325

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +D      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 326 ITFADHTYVAILTLLYTGEHVRSIVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 435 QMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNA 494

Query: 699 MDFSSK---GSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  + K      VILK   D    + + +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYDGKVILKQTIDEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 555 AVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIITLPL 594



 Score = 41.5 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 106/322 (32%), Gaps = 52/322 (16%)

Query: 284 NSFGEAGIAI-DVSKEI-----TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  GE G+A  D++K++      +  +      IL  +   +  F  ++ +   N    E
Sbjct: 228 DEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEE 287

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
              +   F +   +             +P  LN     E +    +  E+        + 
Sbjct: 288 F--LHNWFFSPENT---------EKVLIPVALN-----ELLNDTLEKKESQVGEITFADH 331

Query: 398 Q---TLHVIVTSNPRGGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHL 443
                L ++ T       + +  ++T +  LE            +  T + +     + +
Sbjct: 332 TYVAILTLLYTGEHVRSIVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAI 391

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY--YNESDGW---- 497
            +GVA    + R       F  +    +  L  G  + ++         +N+ D      
Sbjct: 392 IDGVAQSDEEVR------EFAQI--IYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPL 443

Query: 498 -DLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             L   +I++FD   K     L L  ++  LEYS  P    Q ++  +        +   
Sbjct: 444 APLLRKVISNFDVLAKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNAIRHTGKEGY 503

Query: 556 TEKNEALRKADEIKNSFVQHVS 577
             K    +  DE +++ V  VS
Sbjct: 504 DGKVILKQTIDEARSNLVITVS 525


>gi|163793573|ref|ZP_02187548.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181375|gb|EDP65890.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 950

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/504 (22%), Positives = 211/504 (41%), Gaps = 16/504 (3%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +   +  Q  +  +++     AI   D+   +   N     L+++    L  +   + L+
Sbjct: 446 QSALLAQQDAYMRQVVDASFDAIITVDREARILTANAGAERLFKVPAEQLRDSRVEEWLI 505

Query: 357 EF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            F  R+  + PE+    + +     +  ++        +P    L V  T+      + +
Sbjct: 506 GFWARAVREEPERALRDSVRG--HQIIAAATDQGSGVQVP--IELTVAETAASGLTFVIV 561

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++ ++  E      V+   + ++ +++G A+FGPD R+ + N  F  +     +   
Sbjct: 562 LRDISARIGAEAAARQAVERLRDAVERITDGFALFGPDRRLVICNARFVDMLGEAGSTAR 621

Query: 476 PGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           PG     I       + +       G D  A    +  +   S     E L         
Sbjct: 622 PGGRYDVIMECYAETSRAPVSAVGRGRDWVAERTAALAE--TSEPAVRECLDGRWFRIDE 679

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            P      +  + ++T+    E  +T+   +   A   K+ F+ ++S+ELR+PL  +IGF
Sbjct: 680 RPTAEGGLVCVYTDITELKHREMEITQAMISAESASSAKSEFLANMSHELRTPLNAVIGF 739

Query: 591 TDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            DL+K    G L +    +YVE I  S + LL+++  ILD +  +      + +   LND
Sbjct: 740 ADLMKQELFGPLGHDHYREYVEDIIGSGSKLLSMIEVILDFSRSEQVGQSDSDARCALND 799

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++  V + ++    + NI + V  D  L     D   L QI   +LSNA+ FS+ G+ + 
Sbjct: 800 VVGAVVRDLSPIALQKNIDVSVDRDETLPPLNVDGAILYQILQNLLSNAIKFSNPGAPIG 859

Query: 710 LKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
           L+  R  +G    SV ++G  IP+++   V   F            GVGLGL+IV+S  +
Sbjct: 860 LRTFRAADGSAGMSVTDHGVGIPDELIDKVTQPFWQRQGPLVRDHDGVGLGLAIVKSHTD 919

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
             GG +   S     TT+   +P+
Sbjct: 920 ALGGELKFDSQVGRGTTVTILLPA 943



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 93/285 (32%), Gaps = 23/285 (8%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           +G  A +R+     +    +        L+   +  + + D+    +   D+   IL AN
Sbjct: 428 AGHLAVVRVHEQSVLRRRQSAL------LAQQDAYMRQVVDASFDAIITVDREARILTAN 481

Query: 220 ISYKKN--TETEGIVFQKAIGESRKLFKEEIKKRMISS-SALEKNFCETVSTLEHGNNKS 276
              ++      E +   +        +   +++    +     +      +  + G+   
Sbjct: 482 AGAERLFKVPAEQLRDSRVEEWLIGFWARAVREEPERALRDSVRGHQIIAAATDQGSGVQ 541

Query: 277 YKIVRVLNSFGEAGIA-----IDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
             I   +     +G+       D+S     E      +    + +  +T   A+F  +R 
Sbjct: 542 VPIELTVAETAASGLTFVIVLRDISARIGAEAAARQAVERLRDAVERITDGFALFGPDRR 601

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL--NWKTW-KENIFSVYKS 384
           L   N  FV++     +        D ++E     ++ P       + W  E   ++ ++
Sbjct: 602 LVICNARFVDMLGEAGSTARPGGRYDVIMECYAETSRAPVSAVGRGRDWVAERTAALAET 661

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           SE         +G+   +       GG + ++ ++T     E + 
Sbjct: 662 SEPA--VRECLDGRWFRIDERPTAEGGLVCVYTDITELKHREMEI 704


>gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
 gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
          Length = 1230

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/528 (20%), Positives = 208/528 (39%), Gaps = 28/528 (5%)

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV---AIAI---FDQNRYLQFHNR 333
           V + N     G   D++    +   +    E L ++      IA    +D N  +QF + 
Sbjct: 371 VVLSNETLFVGFITDLTPRREMEIAVREKDEQLQSMIANIPGIAFRCNYDINWSMQFISN 430

Query: 334 SFVELWEIDL-AFLATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDT 391
              +L       FL       ++      A   P  +   K  +        +    ++ 
Sbjct: 431 RVFQLTGWQAQDFLDGTIHFPKITNADDLAKVTPTIETAIKNHQHYNVEYRITDRNGEEK 490

Query: 392 WHLPNGQTLHVIVTS--NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           W    G  ++    +     G  I    ++T        Y  +V+       + S  +A 
Sbjct: 491 WVSEFGSGIYDENNNIVMLDGVII----DITESKRRNAAYQGIVRAI-----NYSTSIAE 541

Query: 450 FGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           F  DG I  +N  F SL     E  +     I            ++    L        +
Sbjct: 542 FSVDGLILTANQNFLSLLGYTLEEVIGLHHSIFCSEEDAKSARYKNKWRSLRNGEFVHGE 601

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             R         ++              + ++  +++T+  + E  L E      +A  +
Sbjct: 602 FLRLGKDRREVWINAFYSPVKDFDNKIDKVIMFMIDITERKKMENDLREAKNIAEQAASV 661

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  IIGFT+L+  +++      Q  YV  I+ S+  LL+L+NDIL
Sbjct: 662 KSTFLANMSHEIRTPMNAIIGFTELMLDTEM---KPDQQNYVSTINNSAKSLLHLLNDIL 718

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D A ++ G+++L +    +N L++ V  ++  +  +  + +++ I D   G +     R+
Sbjct: 719 DSAKLEKGMLELEFFDFSMNTLVDSVISTLWLQARKKELDLQLEICDEVSGYYYGPSHRI 778

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+   ++ NA+ F+  GS V LK    N D I F V + G  I  D   ++F  F    
Sbjct: 779 RQVLMNLVGNAIKFTDIGS-VKLKVYAQNQDVIHFDVVDTGIGIAADRLDAIFEPFTQAD 837

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               RR  G GLG +I +  +   GG +  +S     +  +  +P K+
Sbjct: 838 ASMSRRFGGTGLGTTISKQLVEAMGGTIKATSQLGKGSCFSINLPLKK 885



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 62/190 (32%), Gaps = 7/190 (3%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            T+    T    IL+     I   +    +   N    +L+      +    + + L+  
Sbjct: 266 ATLQASETRLSTILNTAIDGIITINTKGNILSFNTVAEQLFGWTADEVIGR-NINILMPN 324

Query: 359 LRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
              +N      N+ K+ +  I  V +  E  +    L   +     V  +     +    
Sbjct: 325 PHHSNHDEYLNNYLKSGQAKIIGVGREVEGLRKDGSLFPIRLAIGKVVLSNETLFVGFIT 384

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV---FGPDGRIKL-SNPAFRSLWKTEENR 473
           +LT + ++E       +     I ++  G+A    +  +  ++  SN  F+      ++ 
Sbjct: 385 DLTPRREMEIAVREKDEQLQSMIANIP-GIAFRCNYDINWSMQFISNRVFQLTGWQAQDF 443

Query: 474 LSPGTHIRNI 483
           L    H   I
Sbjct: 444 LDGTIHFPKI 453


>gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 616

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/412 (22%), Positives = 174/412 (42%), Gaps = 18/412 (4%)

Query: 392 WHLPNGQTLHVIVTSNPRGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           W L  GQ +         G  +     + ++T +V +E +     +           G+ 
Sbjct: 55  WVLCRGQAIEHDT----DGAVVRMAGTYMDITERVAIEDQLRASEQRYQTLSTISPVGIY 110

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA----TCSRYYNESDGWDLFAAII 504
                G     NP + ++     +       +R I          +++++      + I 
Sbjct: 111 RANRHGFFTYVNPRWCAIVGVPADAGLGMGWLRYIHPEDYMLVRNFWDKTISTQQESQIE 170

Query: 505 TSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEA 561
             +      +   + ++++++    S++     Q  +T   V +    +++  L E N  
Sbjct: 171 FRYLRPDGRICWVIAQVVAETDPSGSLLGYVGTQVDITRRMVVEERLRQQSALLEEANTN 230

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L KA  +K+ F+ ++S+ELR+PLT IIGF++ L     G+L   Q + V+++  +   LL
Sbjct: 231 LAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQRAVQHVFDNGQHLL 290

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILDLA + AG + L    ++++D   EV   +         +    +     S  
Sbjct: 291 QLINDILDLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQSKKQQFTYTACEAGLSIE 350

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVF 739
           AD  R+ QI   +LSNA  F+ +G  + L+   D    +  F + ++G  I  +    +F
Sbjct: 351 ADILRVRQILINLLSNASKFTPRGGALGLEIHYDAQRKEVQFCIWDHGIGIAANQQNMLF 410

Query: 740 NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             FV    R    + G GLGL++V   + LHGG + + S     +     +P
Sbjct: 411 QPFVQLDDRLARDQPGTGLGLALVRQLVTLHGGRIEVESRVGEGSRFRVFLP 462


>gi|16803986|ref|NP_465471.1| hypothetical protein lmo1947 [Listeria monocytogenes EGD-e]
 gi|224501253|ref|ZP_03669560.1| hypothetical protein LmonFR_01810 [Listeria monocytogenes FSL
           R2-561]
 gi|16411400|emb|CAD00025.1| resE [Listeria monocytogenes EGD-e]
          Length = 596

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 166/400 (41%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I    +   N++               E+K  Q   
Sbjct: 281 SNPPAEEFLHNWFFSPENTEKVL-IPVALNELLNDTL--------------EKKESQVGE 325

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +D      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 326 ITFADHTYVAILTLLYTGEHVRSIVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +++   + L  LL +V  +      EN + + +  +     +  D  R+ Q+   ++ NA
Sbjct: 435 QMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNA 494

Query: 699 MDFSSK---GSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  + K      VILK   D    + + +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYDGKVILKQTIDVARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 555 AVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIITLPL 594


>gi|283852288|ref|ZP_06369560.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283572370|gb|EFC20358.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 735

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 157/380 (41%), Gaps = 25/380 (6%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E      +       +  + G+++  PDGR    N  +R +       L+ G    +I 
Sbjct: 346 AEKTLGESMARFRAVFEQAAVGISLVTPDGRYLQVNDRYREITGYGTEELA-GLRPADIT 404

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTM 539
               R   E++   L A  + +   E++ ++    ++     + +  P+ +A       +
Sbjct: 405 HPGDRGDEEANFERLRAGHLAAHPWEKRFVRKDGSIV---WADLATSPVTDAAGNLLYFI 461

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               +++       AL +  E   +A   K+ F+ ++S+E+R+P+  I+G   L   ++L
Sbjct: 462 GVIQDISQRKELTAALCQAKETAERASRAKSDFMANMSHEIRTPMNGIMGMIHL---ARL 518

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            S +   +QY++    S+  LL +VND+LDLA ++AG ++L      L   +    + + 
Sbjct: 519 KSPDPALAQYLDLADLSARHLLGIVNDVLDLAKMEAGKVRLLREPFALRREIRAAIEPMQ 578

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG- 717
               E  + + +     +  +   D  RL Q+ + ++ NA+ F+  G  V ++   D+  
Sbjct: 579 AAAGEKGLALALAVAPDVPDAVTGDAGRLRQVLANVVGNAVKFTGTGH-VDIRVELDDDA 637

Query: 718 --------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINL 767
                      F+V++ G  IP D    +F  F            G GLGL I    +  
Sbjct: 638 AGDEAVVRRLRFTVRDTGIGIPADRLDDIFESFEQAHTSAHVLYGGAGLGLPISRRLVEF 697

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG + ++S +   +T    
Sbjct: 698 MGGTIDVASREGEGSTFTFT 717



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 57/167 (34%), Gaps = 24/167 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT-NPSNDE 354
           + E T+ + +     +     V I++   +      N  + E+       LA   P+   
Sbjct: 345 AAEKTLGESMARFRAVFEQAAVGISLVTPDGRYLQVNDRYREITGYGTEELAGLRPA--- 401

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---- 410
             +     ++  E+ N++  +    + +      +  +   +G  +   + ++P      
Sbjct: 402 --DITHPGDRGDEEANFERLRAGHLAAH----PWEKRFVRKDGSIVWADLATSPVTDAAG 455

Query: 411 ---GTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
                I + ++++ + +L               + + + + ++S  +
Sbjct: 456 NLLYFIGVIQDISQRKELTAALCQAKETAERASRAKSDFMANMSHEI 502



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 15/170 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  LD +    A      K L   ++ F+ +F+     +      G  L  N  Y++ T
Sbjct: 332 RVRELDAMG---ASLGAAEKTLGESMARFRAVFEQAAVGISLVTPDGRYLQVNDRYREIT 388

Query: 227 -----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
                E  G+          +  +E   +R+ +       + +     + G+     +  
Sbjct: 389 GYGTEELAGLRPADITHPGDRGDEEANFERLRAGHLAAHPWEKRF-VRKDGSIVWADLAT 447

Query: 282 VLNSFGE------AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN 325
              +          G+  D+S+   +   L    E     + A + F  N
Sbjct: 448 SPVTDAAGNLLYFIGVIQDISQRKELTAALCQAKETAERASRAKSDFMAN 497


>gi|60683572|ref|YP_213716.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60495006|emb|CAH09824.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 557

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 179/384 (46%), Gaps = 22/384 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q   + K   +  +    + H+   V V   D ++  +N    +    +      G  ++
Sbjct: 29  QSASDRKLENVNCLFDAILTHIHAYVLVIDSDFKVLKTNYYDLTHLSPDGKEKRVGDLLQ 88

Query: 482 NIAATCSRY----YNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDS---------VL 526
              A  ++     +       +  AI  +F    E   LQ +L +  D          + 
Sbjct: 89  CRNALSAKGGCGTHAFCQECPVRGAIGNAFRQKKEFTDLQSSLNIAIDEHEFVKCDVMIS 148

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              +      + +LT  ++T   + E AL E  E    AD  K++F+ ++S+E+R+PL  
Sbjct: 149 GVFMTLDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNA 208

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL      +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + 
Sbjct: 209 IVGFSELLA---AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVD 265

Query: 647 LNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           +N LLN+++Q    K+  N+ ++I   S         DR R+ Q+ S  +SNA+ F+++G
Sbjct: 266 INLLLNDLEQLFRMKIGSNSPVQIITESGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEG 325

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
           S + +          F V + GS I  D  + VF+RFV    +  + G GLGLSI ++ +
Sbjct: 326 S-IRIGYQSSENGLRFYVSDTGSGISADKLEGVFDRFVRL--QSDKNGNGLGLSICKTIV 382

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
           N  GG +   S     +T    +P
Sbjct: 383 NKLGGEIGAESEVGKGSTFWFTLP 406


>gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           NCTC 11218]
          Length = 1268

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 35/397 (8%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + +  + +   + N    +Q   +      +     DG I + NP+   L       +  
Sbjct: 368 QQVAERTEAMAQINA---MQRTILSSAGYAIIASDLDGIITVFNPSAEKLLGYTAAEMVG 424

Query: 477 GT-----HIRNIAATCSRYYNESDGWDL--------------FAAIITSFDDERKSLQGT 517
                  H+    AT ++  ++  G  +              F  I       +      
Sbjct: 425 VCTPSRFHLMEEVATRAKQLSQELGETIHPGFDVFVAKARLGFVDITRWTYVHKNGHHIP 484

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           + L+   +L+    P+     +    ++T++++ E+ L E  E   +A+  K+ F+ ++S
Sbjct: 485 IRLIVSCLLDDHQEPV---GYLGIAYDLTETLQREKELAEAKELAEQANRAKSDFLANMS 541

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+  I+G   + + +    LN +Q  Y+     ++  LL L+NDILD + V+AG 
Sbjct: 542 HELRTPMNAILGLLQIAQNT---DLNKQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGK 598

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILS 696
           M++      L +L++E    +++ +   ++ I    D  + ++ + D  RL QI   +  
Sbjct: 599 MEIEQQPFSLPELMHETGILLSSNLQHKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAG 658

Query: 697 NAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
           NA+ F+  G   V ++    +GD      +V + G  + E+  + VF  F         +
Sbjct: 659 NAIKFTEAGEVKVSIQTESHDGDRCVLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRR 718

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             G GLGLSIV+  + L  G V + S     +  +  
Sbjct: 719 YGGTGLGLSIVKHLVGLMEGSVQVKSKQGVGSEFSFT 755


>gi|150021372|ref|YP_001306726.1| histidine kinase [Thermosipho melanesiensis BI429]
 gi|149793893|gb|ABR31341.1| histidine kinase [Thermosipho melanesiensis BI429]
          Length = 465

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 171/370 (46%), Gaps = 44/370 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K     +   E ++ ++EG+ V   DG I+ +N   + + + E+        I +    
Sbjct: 133 EKIKNSEQFMFEVLNSINEGIFVLNKDGEIEFTNKFGKRILEKEDLEDYFNFFISD---- 188

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +  + +  G + F  + T FD                        L + + ++ F NVT
Sbjct: 189 ENNIFTKEFGGNYFTIVKTKFD-----------------------FLGDEKYIIVFNNVT 225

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E+        L++ D+IK  FV ++S+ELR+PL+ +  +T+ L   ++      Q
Sbjct: 226 YEMELEK--------LKQLDKIKTEFVANISHELRTPLSAVKAYTETLLNMEIDP--ESQ 275

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L +L+ND+LD   +D+G M+L YS   + +++++V + + +   + +
Sbjct: 276 KEFLSIIYEQSERLESLLNDLLDFTLIDSGSMELEYSKFNICNVVDDVLKKLLSFAQKQD 335

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSV 723
           ++++   +       AD++R+ Q+   ++ NA+ F+ +      V +   +     I  V
Sbjct: 336 VKLEKECED--VEISADKRRIFQVIYNLVDNAIKFNDREKPERFVKILVKKLEDILIIEV 393

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++NG  IP+   + +F +F            G G+GL+IV+  + LHGG++ + S ++  
Sbjct: 394 EDNGIGIPKSEQEKIFEKFYKIDRSLTYEVPGTGMGLAIVKEIVRLHGGNIEVESEEKKG 453

Query: 782 TTINCRIPSK 791
           +     IP +
Sbjct: 454 SIFRVNIPIR 463


>gi|291514812|emb|CBK64022.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 1049

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/525 (19%), Positives = 216/525 (41%), Gaps = 59/525 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           S     ++ L     + + +++       I+D+N      N +       D  +   N  
Sbjct: 408 SARQRESESLAKYSNLFNAMSIVYIQMKVIYDENG-----NPA-------DALYCDVNSR 455

Query: 352 NDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-----WHLPNGQTLHVIV 404
            + +          ++ E   +         + K ++T   T     ++ P      V++
Sbjct: 456 YERIFIPREQAIGRRVSELFPFPM--TEFMRLIKIAQTENRTITYPYYYEPRDIFYEVVI 513

Query: 405 TSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGV-AVFG-PDGRIKLSNP 461
           + +     I +F  + T     + K +++       +D +++ V   +    G I     
Sbjct: 514 SRSYLEEHIDIFCLDGTALYKTQQKLDSINHKLAMALD-VADIVPWKWDLRKGSIL---- 568

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----ERKSLQGT 517
               + K+   ++  GT+        S  Y      +    +  ++DD     +  ++  
Sbjct: 569 --CDVNKSVHGQMLAGTNADQQLEVPSESYFAKIHKEDRERVRRAYDDLIAGRKDKVREE 626

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTD-------------SVRAERALTEKNEALRK 564
             + SD+   + +  +    T+    +                  R E+ L    +   +
Sbjct: 627 YRVASDAGGRWHLDWVEAQATVDQRDDDGRPLNLIGSSLVITPRKRLEQDLRSARDRAEE 686

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           ++ +K++F+ ++S+E+R+PL  I+GF+ +L  +       ++ +Y+  I  ++ +LL L+
Sbjct: 687 SNRLKSAFLANMSHEIRTPLNAIVGFSSILAET---DEEQEKREYISIIENNNALLLQLI 743

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            DILDL+ ++AG ++ N+S   LN+L++E +  I  K  E  + +          F +DR
Sbjct: 744 GDILDLSKIEAGTLEFNFSDFELNELMHEKENIIRMKTAE-GVELIFEPGLDACLFHSDR 802

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   +L+NA  F++KGS +      +     F V + G  IP +  + +F+RFV 
Sbjct: 803 NRLSQLLINLLTNAAKFTAKGS-IRFGYRAEGSRLRFYVSDTGCGIPPEGQRRIFDRFVK 861

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 ++G GLGL I +S +   GG + + S +   TT    +P
Sbjct: 862 LNSF--KQGTGLGLPICKSIVEHLGGEIGVKSEEGRGTTFWFTLP 904


>gi|116696021|ref|YP_841597.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530520|emb|CAJ96867.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 1106

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 157/372 (42%), Gaps = 15/372 (4%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    I+    G+ +     R + L+N A  S+        +    +  
Sbjct: 378 RQSLRLQESDALGRFVIEVAGVGLMIVERSTRQVLLANAAAHSITDQ-----ATPAGLAQ 432

Query: 483 IAATC-SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +   C +R  +E    +    +   FD +     G    L   V +  I     A  +  
Sbjct: 433 LQDACDARLTSEGTTTEGMPRVQPCFDVDLVGRNGQTRYL--EVRQVEITYEGRAAVLRA 490

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +VTD+ R+E  L E   A   A+  K+SF+  +S+E+R+PL  ++G  +LL    L  
Sbjct: 491 LNDVTDARRSEARLREAIRAADAANHAKSSFLATMSHEIRTPLNGMLGSIELL---GLTR 547

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q   +  +  +S  L+ ++ND+LD + ++AG M L      + +++ +V +  A +
Sbjct: 548 LDSRQRDQLAVMQHASQSLIYIINDVLDFSKIEAGQMSLQLRPCRVEEIVEDVTRRFAAE 607

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                +R+  ++D  L    +AD  +L QI + ++SNA+ F+ +G  ++    +  G   
Sbjct: 608 AARKQLRLLCVNDPSLVEPVMADVVKLEQILNNLVSNAVKFTEQGKVIVTAMRKPGGGVE 667

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  I     + +F  FV           G GLGLSI    + L  G + + S  
Sbjct: 668 IRVIDTGIGIAARDQRRLFEPFVQAEQPDTRHYGGTGLGLSICRRLVGLMSGEIRLVSEP 727

Query: 779 EGVTTINCRIPS 790
              +     +P 
Sbjct: 728 GLGSCFTVSLPL 739


>gi|218258256|ref|ZP_03474658.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM
            18315]
 gi|218225599|gb|EEC98249.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM
            18315]
          Length = 1131

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 119/637 (18%), Positives = 232/637 (36%), Gaps = 62/637 (9%)

Query: 184  KCKKLSNHISVFKVLFDSLDFLVWHRDQAGD---ILWANISYKKNTETEGIVFQKAIGES 240
              K++    +  + + D+L   ++ +D + +   + + N   +   E    +  K   E 
Sbjct: 520  AEKEILRLKTFLQSIMDNLPVGLFIKDVSNEYRYLFYNNKVSEFYKEAFDCMLGKNDFEV 579

Query: 241  RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-------VRVLNSFGEAGIAI 293
              L     ++        +K      + +         +        R+ +  G   I  
Sbjct: 580  NDLKASLFREEDNRVLQSDKPISF--NRVLFDEETGLPVRWAVTTKTRLEDKEGNLYIVA 637

Query: 294  DVSKEITVNDQLTHTYEILHNLTVAIAI-------FDQNR-------YLQFHNRSFVELW 339
             +     +        +I   L+VA+         +D  +            N       
Sbjct: 638  TMVDTTDIRRNELELDDIRRELSVALDAGSLSAWCYDVQKDTFTSLYRKTLANDGLSNKG 697

Query: 340  EIDLAFLATNPSNDELLEFLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
             +DL            +  L     NKL E   ++  +   +  +++         L + 
Sbjct: 698  ALDLLHPDDKEKYSRFMSRLSRGVENKLREVFRFR--RGEGYDWFETYAIG-----LKSE 750

Query: 398  QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            +T  V          I    N+T ++    +          T+D        + PD RI 
Sbjct: 751  KTGEVE-------QIIGTERNITGEMKRRQELEENKLQLDFTLDAAQIISWEYNPDTRIF 803

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             S  +        E          +      R        DL    I   + + +++   
Sbjct: 804  YSPRS-----TVFEGMTISLDEYLSFVDLEDRDLLRKGLEDLACGKIHVMEVQIRTM--- 855

Query: 518  LELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +  L D   E   +P    +      ++        ++    L        +A+ +K++F
Sbjct: 856  VPALGDRWFEMHAVPYGRNENGKIRKLIGLRRDITDLKMTNELIRLRNKAEEANRLKSAF 915

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            + ++S+E+R+PL  I+GF++L+    +     +  +YV+ I  ++ +LL LVNDILDL+ 
Sbjct: 916  LANMSHEIRTPLNAIVGFSNLIA---MAEEPDEIGEYVKIIETNNELLLQLVNDILDLSK 972

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            ++AG M  NYS + L+++ N ++Q   +++ +  + +            +++ RL Q+ S
Sbjct: 973  IEAGQMDFNYSAVDLSEIFNNLQQVYKSRVKD-GVDLVCHLPSVACVIHSEKNRLTQVLS 1031

Query: 693  KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
              LSNA  ++S+GS + +   R      F V + G  + E+    VF RF       Q  
Sbjct: 1032 NFLSNACKYTSEGS-ITMGYERIGAILRFYVADTGKGLAEENIPHVFERFAKFDSFVQ-- 1088

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGLSI ES I    G + + S     +T    IP
Sbjct: 1089 GTGLGLSICESIIQSLDGKIGVDSELGKGSTFWFTIP 1125



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 112/347 (32%), Gaps = 43/347 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ-FHNRSFVELWEIDLAFLATNPSNDEL 355
           KE       T   E+L  +     I+D +  +    N       ++D        +  ++
Sbjct: 394 KEDAYKTANTKMMELLSRMPDMATIYDSDLNIVDIVNPDNHNWKDVD--------TRCQI 445

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHV-----IVTSNPR 409
            + L+  + L      +   E I  V ++ ET + T ++   G+   +      V     
Sbjct: 446 GKNLKDLH-LEYPQAKEMLDEIILHVKRTVETGEVTVFNCKYGEKDRIKYTKARVVPFEN 504

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLW 467
              I    ++T  V  E +   L       +D+L  G+ +     + R    N      +
Sbjct: 505 NSVICFTHDVTPYVVAEKEILRLKTFLQSIMDNLPVGLFIKDVSNEYRYLFYNNKVSEFY 564

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD----DERKSLQGTLELLSD 523
           K   + +        +    +  + E D   L +    SF+    DE   L     + + 
Sbjct: 565 KEAFDCMLGKNDF-EVNDLKASLFREEDNRVLQSDKPISFNRVLFDEETGLPVRWAVTTK 623

Query: 524 SVLE------YSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQH 575
           + LE      Y +  + +   +       D +R E   AL   + +    D  K++F   
Sbjct: 624 TRLEDKEGNLYIVATMVDTTDIRRNELELDDIRRELSVALDAGSLSAWCYDVQKDTFTSL 683

Query: 576 VSYELRSPLT----NIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                R  L     +  G  DLL          K S+++  +S    
Sbjct: 684 ----YRKTLANDGLSNKGALDLL----HPDDKEKYSRFMSRLSRGVE 722


>gi|154491483|ref|ZP_02031109.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184]
 gi|154088472|gb|EDN87517.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184]
          Length = 1041

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 119/637 (18%), Positives = 232/637 (36%), Gaps = 62/637 (9%)

Query: 184  KCKKLSNHISVFKVLFDSLDFLVWHRDQAGD---ILWANISYKKNTETEGIVFQKAIGES 240
              K++    +  + + D+L   ++ +D + +   + + N   +   E    +  K   E 
Sbjct: 430  AEKEILRLKTFLQSIMDNLPVGLFIKDVSNEYRYLFYNNKVSEFYKEAFDCMLGKNDFEV 489

Query: 241  RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-------VRVLNSFGEAGIAI 293
              L     ++        +K      + +         +        R+ +  G   I  
Sbjct: 490  NDLKASLFREEDNRVLQSDKPISF--NRVLFDEETGLPVRWAVTTKTRLEDKEGNLYIVA 547

Query: 294  DVSKEITVNDQLTHTYEILHNLTVAIAI-------FDQNR-------YLQFHNRSFVELW 339
             +     +        +I   L+VA+         +D  +            N       
Sbjct: 548  TMVDTTDIRRNELELDDIRRELSVALDAGSLSAWCYDVQKDTFTSLYRKTLANDGLSNKG 607

Query: 340  EIDLAFLATNPSNDELLEFLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
             +DL            +  L     NKL E   ++  +   +  +++         L + 
Sbjct: 608  ALDLLHPDDKEKYSRFMSRLSRGVENKLREVFRFR--RGEGYDWFETYAIG-----LKSE 660

Query: 398  QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            +T  V          I    N+T ++    +          T+D        + PD RI 
Sbjct: 661  KTGEVE-------QIIGTERNITGEMKRRQELEENKLQLDFTLDAAQIISWEYNPDTRIF 713

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             S  +        E          +      R        DL    I   + + +++   
Sbjct: 714  YSPRS-----TVFEGMTISLDEYLSFVDLEDRDLLRKGLEDLACGKIHVMEVQIRTM--- 765

Query: 518  LELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +  L D   E   +P    +      ++        ++    L        +A+ +K++F
Sbjct: 766  VPALGDRWFEMHAVPYGRNENGKIRKLIGLRRDITDLKMTNELIRLRNKAEEANRLKSAF 825

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            + ++S+E+R+PL  I+GF++L+    +     +  +YV+ I  ++ +LL LVNDILDL+ 
Sbjct: 826  LANMSHEIRTPLNAIVGFSNLIA---MAEEPDEIGEYVKIIETNNELLLQLVNDILDLSK 882

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            ++AG M  NYS + L+++ N ++Q   +++ +  + +            +++ RL Q+ S
Sbjct: 883  IEAGQMDFNYSAVDLSEIFNNLQQVYKSRVKD-GVDLVCHLPSVACVIHSEKNRLTQVLS 941

Query: 693  KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
              LSNA  ++S+GS + +   R      F V + G  + E+    VF RF       Q  
Sbjct: 942  NFLSNACKYTSEGS-ITMGYERIGAILRFYVADTGKGLAEENIPHVFERFAKFDSFVQ-- 998

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGLSI ES I    G + + S     +T    IP
Sbjct: 999  GTGLGLSICESIIQSLDGKIGVDSELGKGSTFWFTIP 1035



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 112/347 (32%), Gaps = 43/347 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ-FHNRSFVELWEIDLAFLATNPSNDEL 355
           KE       T   E+L  +     I+D +  +    N       ++D        +  ++
Sbjct: 304 KEDAYKTANTKMMELLSRMPDMATIYDFDLNIVDIVNPDNHNWKDVD--------TRCQI 355

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHV-----IVTSNPR 409
            + L+  + L      +   E I  V ++ ET + T ++   G+   +      V     
Sbjct: 356 GKNLKDLH-LEYPQAKEMLDEIILHVKRTVETGEVTVFNCKYGKKDRIKYTKARVVPFEN 414

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLW 467
              I    ++T  V  E +   L       +D+L  G+ +     + R    N      +
Sbjct: 415 NSVICFTHDVTPYVVAEKEILRLKTFLQSIMDNLPVGLFIKDVSNEYRYLFYNNKVSEFY 474

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD----DERKSLQGTLELLSD 523
           K   + +        +    +  + E D   L +    SF+    DE   L     + + 
Sbjct: 475 KEAFDCMLGKNDF-EVNDLKASLFREEDNRVLQSDKPISFNRVLFDEETGLPVRWAVTTK 533

Query: 524 SVLE------YSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQH 575
           + LE      Y +  + +   +       D +R E   AL   + +    D  K++F   
Sbjct: 534 TRLEDKEGNLYIVATMVDTTDIRRNELELDDIRRELSVALDAGSLSAWCYDVQKDTFTSL 593

Query: 576 VSYELRSPLT----NIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                R  L     +  G  DLL          K S+++  +S    
Sbjct: 594 ----YRKTLANDGLSNKGALDLL----HPDDKEKYSRFMSRLSRGVE 632


>gi|52082612|ref|YP_081403.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52788010|ref|YP_093839.1| YycG [Bacillus licheniformis ATCC 14580]
 gi|319648477|ref|ZP_08002693.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52005823|gb|AAU25765.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52350512|gb|AAU43146.1| YycG [Bacillus licheniformis ATCC 14580]
 gi|317389556|gb|EFV70367.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 614

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 30/389 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-PAFRSLW 467
           G     F  LT ++ + ++      K     I ++++GV     +G I L N PA   L 
Sbjct: 241 GQLATTFNYLTRELKEAQSMTEGERKKLSSVIAYMTDGVIATNRNGAIILLNTPALELLN 300

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
            + E  L     I ++      Y  E       + ++    +ER S+           + 
Sbjct: 301 VSRETALEM--PITSLLGLEDEYTFEDLVEQQDSLLLEIEQEERTSVLR---------VN 349

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +S+I   + +       + D    E+            D+ +  FV +VS+ELR+PLT +
Sbjct: 350 FSVIQKEHGKIDGLIAVIYDVTEQEQ-----------IDQERREFVANVSHELRTPLTTM 398

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + + L        N    +++      +  ++ LVND+L L+  D+   + N   I  
Sbjct: 399 RSYLEALAEGAWQDPNI-APRFLNVTQNETERMIRLVNDLLQLSKFDSKDYQFNKEWIHF 457

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
               + + +       E ++        +      D  ++ Q+   I+SNA+ +S +G  
Sbjct: 458 IRFFSLIIERFE-MTKEQHVEFISNLPDRELYVEIDPDKITQVLDNIISNALKYSPEGGH 516

Query: 708 VI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
           +   +    +      SVK+ G  IP    + +F RF        RR  G GLGL+I + 
Sbjct: 517 ITFSVDVNEEEELLYVSVKDEGVGIPRKDVEKIFERFYRVDKARTRRLGGTGLGLAIAKE 576

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +  H G +   S +   TTI   +P KE
Sbjct: 577 MVQAHSGDIWADSIEGKGTTITFTLPYKE 605


>gi|242280141|ref|YP_002992270.1| cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123035|gb|ACS80731.1| Cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 755

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 12/248 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    E    A+  K+ F+  +S+E+R+P+  I+G TDLLK S        Q +Y++ 
Sbjct: 362 RKLNAAKENAVAANHAKSQFLAVMSHEIRTPMNVILGTTDLLKDSH---PRDDQKKYIKL 418

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +   LL L+NDILD++ V+AG++ L       + ++ +          +  I +   
Sbjct: 419 LDDAGEGLLALINDILDMSKVEAGLLDLESIDFNPSKIMRQSCSVFEHSASQKGIELACR 478

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNN 726
            DGKL   V  D  R+ QI   ++ NA+ F+  G  V ++A       +N +  F +++ 
Sbjct: 479 VDGKLPGLVQGDPVRVKQILLNLIGNAVKFTDTGG-VYVQAGYKQLTNNNVELKFEIQDT 537

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP+D   ++F  F        R   G GLGLSI +   ++  G +++SSS    +T 
Sbjct: 538 GPGIPKDRQHAIFEHFTQADSSITREYQGTGLGLSISKKLCDMMNGKITVSSSPGSGSTF 597

Query: 785 NCRIPSKE 792
              I  KE
Sbjct: 598 TFTITMKE 605


>gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 1160

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 7/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R  R L  + E L K ++ ++ F+ ++S+ELR+PL +II  + +L   K+   + K 
Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKD 575

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I+ +   LL L+ND+LDL+ V++G M LN  T   ++L+ +++Q   +   E N
Sbjct: 576 MEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKN 635

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSV 723
           I    + D      V DR ++ QI    LSNA  F+S+GS + LKA  D     D IFSV
Sbjct: 636 ISF-FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVI-LKAEMDKDRENDVIFSV 693

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IPE+    +F  F         +  G GLGLSI +   +L  G + + S     
Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753

Query: 782 TTINCRIP 789
           +T   ++P
Sbjct: 754 STFFLKLP 761


>gi|170758421|ref|YP_001787843.1| putative phosphate regulon sensor protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405410|gb|ACA53821.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 569

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 167/396 (42%), Gaps = 37/396 (9%)

Query: 401 HVIVTSNPRGGTIW-MFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VI+ S    G +   F    ++     +E +           +  +  GV     + ++
Sbjct: 202 RVIINSEDEIGRLGRTFNAMADILENSLVEVRDKQ--NRLEAILKSMDSGVVAIDKEFKV 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP    L+  + + +  G ++ +            D    +  I   + ++R     
Sbjct: 260 IMINPYANKLFGIKRDII--GENLMDNIRDFELEKVLKDKEPGYKEIGILWPEKRTLRVK 317

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T +++S            N  T+    ++TD  + E               ++  FV +V
Sbjct: 318 TTDIISK---------YDNIGTVAVVQDITDIKKLE--------------NMREQFVANV 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF++ LK          + ++++ I+  +  L  L+NDIL L+ ++  
Sbjct: 355 SHELKTPLTSIKGFSETLK---YVDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQ 411

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L    I LN+L+ +V   +     + NIRI ++ + K+   + ++ +  Q+   ++ 
Sbjct: 412 KQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGE-KVPLLIGNKDKYNQMIINLVD 470

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ ++     V +   +D G+ +F V++ G  I E+    +F RF        R   G 
Sbjct: 471 NAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLYRIFERFYRVDKARSRAEGGT 530

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV+  +    G + + S  +  T    +IP 
Sbjct: 531 GLGLAIVKHIVLSINGKIEVKSEPKRGTKFIVKIPL 566



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSK--EI 299
           LF   I   MI      +     ++  +            +   G    A+ D+ +   +
Sbjct: 171 LFSSRISMAMIKPIKNLEFVTSRIARGDFDRRVIINSEDEIGRLGRTFNAMADILENSLV 230

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V D+      IL ++   +   D+   +   N    +L+ I    +      + L++ +
Sbjct: 231 EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPYANKLFGIKRDIIG-----ENLMDNI 285

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWM 415
           R         + +   + I  ++            P  +TL V    I++     GT+ +
Sbjct: 286 RDFELEKVLKDKEPGYKEIGILW------------PEKRTLRVKTTDIISKYDNIGTVAV 333

Query: 416 FENLTVQVDLE 426
            +++T    LE
Sbjct: 334 VQDITDIKKLE 344


>gi|21673490|ref|NP_661555.1| sensor histidine kinase [Chlorobium tepidum TLS]
 gi|21646596|gb|AAM71897.1| sensor histidine kinase [Chlorobium tepidum TLS]
          Length = 399

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 144/383 (37%), Gaps = 25/383 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G     F  L+ ++    +     +   E +  + E + V    G I L+NPA   L+  
Sbjct: 35  GRLARAFNYLSEEI---VRLTRKEEWLREVLSSIREAIIVTNASGEIVLANPAASRLF-M 90

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            E        + NI     R        +LF  +              +       L+ +
Sbjct: 91  IEAARKRSIPVTNIEDAAMR--------ELFERVQKRQSGIYNEELTAMTSKGKRTLKVT 142

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +P+     +               +      LR  +  +  FV  VS+ELR+PL +I G
Sbjct: 143 AVPVMRRGALFDGTV---------LVINDVTRLRNLERTRRDFVSSVSHELRTPLASIKG 193

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +T+ L    +       + ++  I   +  L  LVND+LDL+ +++G +  ++  + +  
Sbjct: 194 YTETLLEGAMND-PENATAFLNIIHQEAEQLTALVNDVLDLSRIESGKIAYSFEPVDVKP 252

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTV 708
            L +             +RI++ +   L + +ADR     +   ++ NA+ +   +   V
Sbjct: 253 QLEKTAALFEPAAARKGVRIELNAPEGLPAVLADRSYFDIVVRNLIDNAIKYVDAESGRV 312

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            + A          V +NG  IP+     +F RF        R   G GLGLSIV+  + 
Sbjct: 313 RVSAYATGDSVSIEVADNGIGIPQADLDRIFERFYRVDKARSRELGGTGLGLSIVKHIVL 372

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            H G V + S     TT    +P
Sbjct: 373 AHKGKVEVRSRINRGTTFTVTLP 395



 Score = 44.2 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 50/135 (37%), Gaps = 6/135 (4%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            + + +  +     E+L ++  AI + + +  +   N +   L+ I+ A   + P  +  
Sbjct: 46  EEIVRLTRKEEWLREVLSSIREAIIVTNASGEIVLANPAASRLFMIEAARKRSIPVTNIE 105

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              +R   +  ++     + E + ++    +       +P      V+       GT+ +
Sbjct: 106 DAAMRELFERVQKRQSGIYNEELTAMTSKGKRTLKVTAVP------VMRRGALFDGTVLV 159

Query: 416 FENLTVQVDLETKYN 430
             ++T   +LE    
Sbjct: 160 INDVTRLRNLERTRR 174


>gi|218258479|ref|ZP_03474846.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225451|gb|EEC98101.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
          Length = 720

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/507 (18%), Positives = 206/507 (40%), Gaps = 32/507 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT-----NPSNDE-LLEFL 359
           T   +  +NL + + ++D    L   N +  +++      L       NP+  E +L  +
Sbjct: 220 TKFQQFFNNLPIGVELYDAEGNLIDINDADTKIFGSSREQLLGVNLFKNPAVPEKILNQI 279

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           +        L +          Y S+ + +  + +  G  L+     +   G + +  + 
Sbjct: 280 KKKKAFSFPLAYDFNCIRDSRYYHSNISDETKYLMVKGIGLNDREFGH--IGYLLIISDE 337

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T +   E +    + +    +      +A +  + +    NP      +  +       +
Sbjct: 338 TEKQAKEEQTQNNLAILKAVLLSGHSLIAEYDIEKKELFVNPLLNETPEDNKLFNYLRNN 397

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDE-----RKSLQGTLELLSDSVLEY-SIIPL 533
                    +    +D  +L   +I    D      R +++     +  +   Y +    
Sbjct: 398 KYMTIEGVQQIIRSTDNVNLLFQVIGGKQDHCSFECRTAIENETIWIRINAQAYKTKGSR 457

Query: 534 PNAQTMLTFVNVTDSVRAERALTE----------KNEALRKADEIKNSFVQHVSYELRSP 583
              + +    N+T+    E  L            + + +R+AD++K++F+ ++S+E+R+P
Sbjct: 458 RQNKMICHVTNITEEKLLEEKLHHAEYETRQSELEIQKVREADKLKSAFLANMSHEIRTP 517

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIGF+++L  +          ++V+ I+ +S +LL L+ DILD + +++GI+  + +
Sbjct: 518 LNAIIGFSNILAETDDKEEK---EEFVKIINKNSDLLLRLITDILDFSKIESGILDYSLA 574

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
              L ++ +E  Q  A KM E  + +    D      +  D +R+ Q+ S ++SNA  F+
Sbjct: 575 DTSLKEIFHEQYQVHALKMPEK-VSLICDFDALPDILIHTDPKRVTQVISNLISNAAKFT 633

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS +        G  +  V + G  I     +S+F+RFV       ++G GLGL+I +
Sbjct: 634 EEGS-ISFSYRIVEGYVLIEVIDTGIGISLQHQQSIFDRFVKINSF--KQGTGLGLTICK 690

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
           + I    G + + S           +P
Sbjct: 691 TIIEALNGTIGVDSRPGEGARFWFTLP 717


>gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1082

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 163/386 (42%), Gaps = 30/386 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                +    +      IDH+++G+ V   +G+I  +NPA  +L+   +           
Sbjct: 468 KMATVELQETLANLTSIIDHIADGLLVTDAEGKITRTNPALANLFALGD----------- 516

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                 +  +E+   D+   ++ S      + QG ++L  D + +     +   Q     
Sbjct: 517 -LDIRGKLCSEAFSGDVLNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVL-KQVSSPS 574

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK------- 595
            +          L     A ++ D +K  F+  VS+ELR+PLT+++GF  L++       
Sbjct: 575 GSEELIYIGSVVLFRDITAEKEIDRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVI 634

Query: 596 -------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
                   +K+    ++ +  V+ I +    L NL+ND+LD+A ++AG  + +   + + 
Sbjct: 635 LPFIKTDDTKINRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIK 694

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++     +  +  +   I++ V     L   + D  +L+Q+F  ++SNA+ F+  G  V
Sbjct: 695 TVVERAISATTSLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTETG-NV 753

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
            LK          SVK+ G  I     + VF +F    +    + +G GLGL I +  I 
Sbjct: 754 TLKLMAVKSAIKVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQ 813

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            HGG + + S     +T    +P  +
Sbjct: 814 HHGGSIWVESQVGVGSTFYFTLPLPD 839



 Score = 44.9 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 49/138 (35%), Gaps = 15/138 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             + + + L +   I+ ++   + + D    +   N +   L+ +    +     ++   
Sbjct: 470 ATVELQETLANLTSIIDHIADGLLVTDAEGKITRTNPALANLFALGDLDIRGKLCSEAF- 528

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------ 410
               S + L   L  K    + F      E  +    +  G    V   S+P G      
Sbjct: 529 ----SGDVLNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVLKQV---SSPSGSEELIY 581

Query: 411 -GTIWMFENLTVQVDLET 427
            G++ +F ++T + +++ 
Sbjct: 582 IGSVVLFRDITAEKEIDR 599


>gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 645

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 165/395 (41%), Gaps = 30/395 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           ++  +   + L        + +   I+ L + +  F    R    +   R         L
Sbjct: 117 VYARVETHLRLNRLLRESEESRRVLIEELPDIIVRFDRQARHVSVSDNIRD--------L 168

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSI 530
                   I  T             +   I +  D  + L+  + L S      +    +
Sbjct: 169 GITEPGEYIGRTHRELGYSESCCRFWEKSIATVFDSGEPLEEEMSLYSGDNEGLIHNVRM 228

Query: 531 IPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +P  ++       +    ++T   +A++AL    +    A++ KN F+ ++S+E+R+PL 
Sbjct: 229 VPERDSSGNIVTVLAISRDITLQKQAQQALLNAKKDAEAANQSKNEFLANMSHEIRTPLN 288

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I G   +L ++    LNS+Q +++E    +S  +  L++DILDL+ ++AG   ++  T 
Sbjct: 289 GIEGMMQMLLST---PLNSEQQKFIEMGHQASRRMTELLSDILDLSRLEAGREDVSKRTF 345

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L D+ + +   +  K  E  I +       L  + + D   + QI   ++ NA+ F+  
Sbjct: 346 NLKDVCDSLWDLLGIKSREKGIPLTFNLSPSLPDTLMGDSTMVRQILFNLVGNALKFTEH 405

Query: 705 GSTVILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
           G  V L         +D    +F+V + G  IP+D    +F  F  V+ +   +  G GL
Sbjct: 406 G-QVTLDIHPLPQSHQDQLQVLFTVSDTGPGIPDDKQDRIFKPFDMVNGSLTRKHEGKGL 464

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL++      L GG +S+ S++   T+I   +P +
Sbjct: 465 GLTVTHRLAKLMGGTISVDSAEGQGTSIYVTLPFE 499


>gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 755

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 12/253 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R +R + EK+ A   A   K+ F+  +S+E+R+P+  +IG T LL  ++   L  +Q +
Sbjct: 216 YRGDRIIQEKHAAAAAAARAKDDFLAMMSHEIRTPMNGVIGMTGLLLDTE---LTPQQQE 272

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E I  S   LL L+NDILD + ++AG + L      +   + +  + +A+++    I 
Sbjct: 273 YTETIRKSGDSLLTLINDILDYSKIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIE 332

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD-----FIF 721
           +  + +  +  + + D  RL QI   +L NA+ F+  G  V+ + A     D       F
Sbjct: 333 LAGVVEPDVPQAILGDVTRLRQILVNLLGNAIKFTQSGEVVVNVSAEPFAADTPLYELSF 392

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V++ G  IP +    +F  F        R   G GLGL I +    L GG + + S + 
Sbjct: 393 AVRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGLGLVICKRLSELMGGRIWVESEEG 452

Query: 780 GVTTINCRIPSKE 792
             +T    I ++E
Sbjct: 453 QGSTFAFTIQAEE 465


>gi|95928312|ref|ZP_01311060.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135583|gb|EAT17234.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1001

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/668 (18%), Positives = 245/668 (36%), Gaps = 84/668 (12%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN-ISYKKNTETEGIVFQKAIGESRKLF 244
           + L N    ++ LF++    V+     G IL  N          E  V  +A+      F
Sbjct: 207 RGLENKELRYRTLFENTADGVFVVKA-GQILETNGQGCLLLDRHEDDVVGQAVSSFAPEF 265

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNN------KSYKIV----RVLNSFGEAGIAID 294
           + + +  + ++    +      +             +   +V    R+           D
Sbjct: 266 QPDGRSSLSAARHYAETAMREGTQYFSWQYLRGVHLREADVVLQALRLNGDEVVLATMRD 325

Query: 295 VSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           V+     E ++ ++  H   I    +    ++ +N  L   N +   ++  +L  L +  
Sbjct: 326 VTDFREVERSLRERERHYRAIFELGSNGFLLYRRNGQLVDANPAACRMYGYELEELLSLT 385

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHL-PNGQTLH--VIVTS 406
            ++ +              +   + +++     S E  H +   L  +G  +H  V + S
Sbjct: 386 LSERI-----------HVDDCANYLDSVAQTINSDEGCHMELRGLHRDGGLIHFDVYLES 434

Query: 407 NPRGGTIW---MFENLTVQVDL-------ETKYNTLVKVQGETIDH---------LSEGV 447
               G I       ++T +          E +   L+ +Q   ++          L + +
Sbjct: 435 FSWRGEILCLTTAVDVTERKKADRSAQCEEIRMEALLTLQQ-MLEFPEKQVCHYILGQAL 493

Query: 448 AVFGPDG-------------RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            +    G              IK SN    + W   +  L      +        + + S
Sbjct: 494 RICDSHGGFLAVTGGGCTELTIKASNLKEGADWFERQIGLPDCRQPQLYNYRLQEWLDGS 553

Query: 495 DGWDLFAAIITSFDDERKSLQGTL---ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +D +  +    D    ++ G L   E  SD  +   ++ L                R+
Sbjct: 554 LNYDRYLQVPLLEDGHIVAVIGLLDKEEPYSDFDIRQMVLLLQGT------WQRLQRNRS 607

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
             A+ +  E    A+  K+ F+  VS+E+R+P+T  I     +  S   SL+ +Q QY+ 
Sbjct: 608 ILAMRQATEEAEAANRAKSEFLAVVSHEIRTPMTVTIAALQQVLES---SLDDEQRQYLT 664

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + +S  LL+L+NDILD + ++A  + L  S   L + +  V   +     +  +R+++
Sbjct: 665 MANDASDSLLSLINDILDFSKIEAEKLVLEESPFNLRECIENVVAILGVNARQKGLRLEL 724

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNG 727
            S+  L    + D+ R+ QI   ++SNA+ F+ +G   V + A + +       +V + G
Sbjct: 725 ASNASLPDLLLGDQHRVRQILVNLVSNAIKFTEQGQVSVKVDAEQQDDHHLVHVAVCDTG 784

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS--SDEGVTT 783
             I + + + VF  F        R   G GLGL+I +  +   GG + + S   D   + 
Sbjct: 785 IGIDDSLRERVFESFSQADSSTTRKYGGTGLGLAICKGLVEQMGGVIGVESCQDDTQGSC 844

Query: 784 INCRIPSK 791
               +P +
Sbjct: 845 FYFSLPMR 852


>gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1290

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/461 (21%), Positives = 177/461 (38%), Gaps = 23/461 (4%)

Query: 344  AFLATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              +       ELL  LR+  +  E  +   + +    S  +  E   D + +       +
Sbjct: 697  DVMMPEVDGFELLRELRANPQTKELPIILLSARAGEESRIEGLEAGADDYLIKPFSAREL 756

Query: 403  IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVFGPDGRIKLSNP 461
            +           + +  T +   + +     K Q E  +  +S+   V   + R    N 
Sbjct: 757  LARVEANLKMAQLRQEATRREQAQRRVAEKAKEQLESVLSTISDQFLVLDREWRYLYVND 816

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                    E   L   +            ++      +   I   F+    +        
Sbjct: 817  RVMETVGLEREALLGRSVWEVFPDVVGTEFDRQIQQAIAQQIPAHFEYYYSTW------- 869

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE-------KNEALRKADEIKNSFVQ 574
             +   E    P P   T+     +TD  RAE+                 +A+ +K+ F+ 
Sbjct: 870  -NRWFENHAYPSPEGITIFIT-EITDRKRAEQEREHLLAREQAARAEAERANRVKDEFLA 927

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             VS+ELRSPL  I+G++ LL+T KL    +K +Q +  I+ ++ +   L+ D+LDL+ + 
Sbjct: 928  IVSHELRSPLNPILGWSTLLQTQKLNP--AKTAQALNAIARNARLQAELIEDLLDLSRIL 985

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
             G + LN     L   +    +++       +I+I  + +  +G  + D  RL Q+   +
Sbjct: 986  RGKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDSSRLQQVMWNL 1045

Query: 695  LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRR 752
            LSNA+ F+ +G  V ++  R        V + G  I  D    +F  F    +A   +  
Sbjct: 1046 LSNAIKFTPEGGLVDIQLERCGAQAQIIVSDTGKGIDPDFLPYIFEYFRQENSATTRKFG 1105

Query: 753  GVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPSKE 792
            G+GLGL+IV   + LHGG V   S  +    T   ++P  +
Sbjct: 1106 GLGLGLAIVHHLVELHGGTVEAESLGEGQGATFTVKLPLMQ 1146



 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 115/257 (44%), Gaps = 6/257 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           AQ          + R+      + E L + D  K  F  +VS+E R+PLT ++G  +   
Sbjct: 322 AQITGQIATAIANARSYEEERRRAEQLAELDRAKTVFFSNVSHEFRTPLTLMLGPVE--- 378

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   + +++Q   +E I  ++  L  LVN +LD + ++AG ++  Y    L  L  ++ 
Sbjct: 379 EALQATQDAQQRDRLELIHRNALRLQKLVNTLLDFSRIEAGRIEAVYQPTDLAMLTTDLA 438

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               + +    + ++V           DR+   +I   +LSNA  ++ +G  + +     
Sbjct: 439 GVFESAIARAGLHLRVDCPPLPEPTYVDREMWEKIVLNLLSNAFKYTFEGE-IAVILRSR 497

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           N      V++ G  IP +    +F RF  V  A      G G+GLS+V+  + LH G +S
Sbjct: 498 NEQIELEVRDTGIGIPAEELPQIFERFHRVQGARGRTYEGSGIGLSLVQELVRLHDGTIS 557

Query: 774 ISSSDEGVTTINCRIPS 790
            SS  +  T+    IP+
Sbjct: 558 ASSIVDQGTSFIVSIPT 574



 Score = 38.8 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 55/160 (34%), Gaps = 16/160 (10%)

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQL-----THTYEILHNLTVAIAIFDQNRYLQFHNR 333
           + RV  +   A +  + ++      ++          +L  ++    + D+     + N 
Sbjct: 757 LARVEANLKMAQLRQEATRREQAQRRVAEKAKEQLESVLSTISDQFLVLDREWRYLYVND 816

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             +E   ++   L      +            P+ +  +  ++   ++ +    H + ++
Sbjct: 817 RVMETVGLEREALLGRSVWEVF----------PDVVGTEFDRQIQQAIAQQIPAHFEYYY 866

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
               +        +P G TI++ E +T +   E +   L+
Sbjct: 867 STWNRWFENHAYPSPEGITIFITE-ITDRKRAEQEREHLL 905


>gi|186685940|ref|YP_001869136.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468392|gb|ACC84193.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1575

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 125/712 (17%), Positives = 252/712 (35%), Gaps = 111/712 (15%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWANISYKKNTETEGIVFQ 234
             ++ +     + L      ++ +F++    +   R + G  L AN    +          
Sbjct: 640  RDITDRKQSEEALRRSEQKYRNIFENFQVGIARIRLEDGLFLEANQRQAEILGYSCATDL 699

Query: 235  KAIGESRKLFKEEIKKR--MISSSALEKNFCETVSTLEHGNNKSYKIV---RVLNSFGEA 289
                 + + +     ++  +   +   +     +       +  + ++   R        
Sbjct: 700  IGKQFTTEFYANPNDRQQLLAEMAQQGEVRNFELQLCRRDKSLGWGLISLRRNAQDGCID 759

Query: 290  GIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LA 344
             +  D+S     E ++         +  + ++A+ + +    L   NR+  EL+      
Sbjct: 760  AVITDISDRKLVEESLRQSEARFRALYESTSIAVMLQENGIPLD-CNRAAEELFGYSRQE 818

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTL-- 400
            FL  +PS  E     +       Q +    +E +   Y+    H+  W     +G     
Sbjct: 819  FLQKHPS--EFSPPFQPNG----QTSASLAREQVAIAYEQGR-HRFEWVHRRADGTDFPA 871

Query: 401  --HVIVTSNPRGGTI-WMFENLTVQVDLETKY-------NTLVKVQGETIDHLSE----- 445
               + V        I  + ++LT +  +E            L  +  + ID  ++     
Sbjct: 872  EVWLTVFKLGERKLIQGLVQDLTERKQVEATLWHRAQVDRLLNSISRQFIDQDADTAINF 931

Query: 446  ---GVAVF------------GPDGRI-----------KLSNPAFRSLWKTEENRLSPGTH 479
                +A F             P  +             L+N           N++  G  
Sbjct: 932  TLQAIAEFMGAECSCIFEYHEPQQQFHIAHEWYNPSSILNNTTSSEPLPWFYNQILNGNP 991

Query: 480  IRNIAATC-------SRYYNESDGWDLFAAIITSFDDERKSLQGTLEL----LSDSVLEY 528
            I+ + A+        +    E    ++  +++         + G LEL     S +  + 
Sbjct: 992  IQGLQASRIANILPEANVETELTYREIIKSVVAVPMIYAGRVVGLLELDTVNKSKTWNQE 1051

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             I  L     ++         +AE AL    E    A+  K++F+ ++S+ELR+PL  I+
Sbjct: 1052 EINLLQLVSELIAIGRS--RHKAEEALRIAKETAETANRSKSAFLANMSHELRTPLNAIL 1109

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            GF  L++     +LN +Q   +  I+ S   LLNL+ND+L+++ ++AG + LN ++  L+
Sbjct: 1110 GFAQLMERD--TTLNKRQRDSLATINRSGEHLLNLINDVLEMSKIEAGRIVLNPTSFDLH 1167

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
             LL E++Q    +  +  + +       L  ++  D  +L Q+   +L NA+ F++ G  
Sbjct: 1168 RLLQEMQQMFQVRAKDKKLSLSFELAPNLHQYILTDESKLRQVLINLLGNAIKFTNTGGV 1227

Query: 708  ---VILKAARDNGD---------------------------FIFSVKNNGSSIPEDMCKS 737
               V L                                     F +++ G  IP +   +
Sbjct: 1228 TLRVSLGIGEQGSRGEVALSLSPLPLCPSAPLPLVPNSQSLISFKIEDTGLGIPTEELDN 1287

Query: 738  VFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F  FV  A   Q   G GLGL+I   F+ L GG + + S     +T    I
Sbjct: 1288 LFQPFVQTASARQVMEGTGLGLTISRQFVQLMGGDIRVHSVVGSGSTFYFDI 1339



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 111/325 (34%), Gaps = 36/325 (11%)

Query: 178 LAETTLKCKKLSNHIS-VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           L     + + +   +      + D++   VW     G I W N ++ K      I+   A
Sbjct: 5   LTSLVNQLRAILGKMEVALGAIADAI---VW-TGSDGKIQWCNTAFDKLVNRSHILVLNA 60

Query: 237 IGESR---KLFKEEIKKRMISSSALEKNFCETVSTLE--HGNNKSYK-------IVRVLN 284
                    L  EE+      +  +     E     E   G ++S         +     
Sbjct: 61  KLSDLLFLSLAGEEVAPESYPNMRVLGGEYEITEEYECRDGKHRSLILEISGNCVQLTGG 120

Query: 285 SFGEAGIAIDVS-----------KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
                 +  DV+            +    + L+     + +    I + +Q+  +   N+
Sbjct: 121 DRSSILVIRDVTQAKHWEREGYLAQQKQAETLSLLQATVESTADGIIVVNQDFNVAVFNQ 180

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            F+++W I  + L  +  N+E  +F+    + PE    +   + +F  +   E   D   
Sbjct: 181 KFLQMWSIPESLLLPS-QNNERFKFMSEQTRDPEAFIARV--KELFYKFPEQEAF-DLIE 236

Query: 394 LPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           + +G+          +G    G +W F ++T +  +E   +         +++ ++ +++
Sbjct: 237 MKDGRVFERYSQPQWQGNKIIGRVWSFRDITARQQVEKALSESEIKFRRIVENSNDIISL 296

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRL 474
              +GRI   +P    L   E   L
Sbjct: 297 IDLEGRISYISPNLAKLTGYETTEL 321



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 135/419 (32%), Gaps = 27/419 (6%)

Query: 71  KYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA 130
           K+  ++  +N +  + D +     I   L +      T+ + + F +++          A
Sbjct: 282 KFRRIVENSNDIISLIDLEGRISYISPNLAKLTGYETTELEGIPFADFIHPDDLPSCLDA 341

Query: 131 TEKLRKEGQSFDLVAETQ---NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
             ++   G+  ++    +        +     + +     ++ +      + E     + 
Sbjct: 342 VNRVVTTGERLEIEYRARLKDGSWQWQASNLATTNDLNGNLVLISVARV-ITERKQAEQA 400

Query: 188 LSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-- 244
           L      F+ LF++  F +   R   G IL AN    +      +       +    F  
Sbjct: 401 LLKSEQKFRNLFENSQFGILRSRIDDGLILDANQRLAELLGYSCVADLIGGTKFTTDFYA 460

Query: 245 KEEIKKRMISSSALEKNF--CETVSTLEHGNNKS--YKIVRVLNSFGEAGIAIDVSKEIT 300
               ++R+I+    + +    E      +G      + +   +       +  D++    
Sbjct: 461 NPSDRQRIITELREKGSLKNFELQFYQCNGKAHWGLFSLRLNVEDNCLEAVVADINDRKQ 520

Query: 301 VNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           V   L  +  IL          I + D+N  +  +N+ F +LW+I   F++ N       
Sbjct: 521 VEADLHRSNAILKAQQEASIDGILVVDENNRVVSYNQRFCQLWQIPERFVSGNN------ 574

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH-----VIVTSNPRGG 411
             L        +   +   +  +      +  +D   L +G+TL      V   +    G
Sbjct: 575 RRLLELALEKLEQPQEFLAKVEYLYAHPDQISRDEIRLKDGRTLDRYSASVRSLTEDYYG 634

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKT 469
            IW F ++T +   E       +      ++   G+A     DG    +N     +   
Sbjct: 635 RIWYFRDITDRKQSEEALRRSEQKYRNIFENFQVGIARIRLEDGLFLEANQRQAEILGY 693



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 80/572 (13%), Positives = 179/572 (31%), Gaps = 74/572 (12%)

Query: 40  PIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQ- 98
             IL+IR          E Y    +  + LS   + +       IV   +D    +  Q 
Sbjct: 123 SSILVIRDVTQAKHWEREGYLAQQKQAETLSLLQATVESTADGIIV-VNQDFNVAVFNQK 181

Query: 99  ------LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK------EGQSFDLVAE 146
                 + + + +P  + +   F                 ++++      E ++FDL  E
Sbjct: 182 FLQMWSIPESLLLPSQNNERFKF----MSEQTRDPEAFIARVKELFYKFPEQEAFDL-IE 236

Query: 147 TQNDCAIK--IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
            ++    +   + +  G+    R+ S      ++       K LS     F+ + ++ + 
Sbjct: 237 MKDGRVFERYSQPQWQGNKIIGRVWSF----RDITARQQVEKALSESEIKFRRIVENSND 292

Query: 205 LVWHRDQAGDILWANISYKKNT-----ETEGIVFQKAIGESR---------------KLF 244
           ++   D  G I + + +  K T     E EGI F   I                   +  
Sbjct: 293 IISLIDLEGRISYISPNLAKLTGYETTELEGIPFADFIHPDDLPSCLDAVNRVVTTGERL 352

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
           + E + R+   S   +      +   +GN     + RV+    +A  A+  S++   N  
Sbjct: 353 EIEYRARLKDGSWQWQASNLATTNDLNGNLVLISVARVITERKQAEQALLKSEQKFRNLF 412

Query: 305 LTHTYEILHN-LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
               + IL + +   + I D N+ L                 L  +   D +     + +
Sbjct: 413 ENSQFGILRSRIDDGL-ILDANQRL--------------AELLGYSCVADLIGGTKFTTD 457

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---SNPRGGTIWMFENLT 420
                 + +     +     S +  +  ++  NG+    + +   +        +  ++ 
Sbjct: 458 FYANPSDRQRIITELREKG-SLKNFELQFYQCNGKAHWGLFSLRLNVEDNCLEAVVADIN 516

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E   +    +     +   +G+ V   + R+   N  F  LW+  E  +S     
Sbjct: 517 DRKQVEADLHRSNAILKAQQEASIDGILVVDENNRVVSYNQRFCQLWQIPERFVSGNNR- 575

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE-----YSIIPLPN 535
                            +  A +   +    +  +  + L     L+        +    
Sbjct: 576 ---RLLELALEKLEQPQEFLAKVEYLYAHPDQISRDEIRLKDGRTLDRYSASVRSLTEDY 632

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
              +  F ++TD  ++E AL    +  R   E
Sbjct: 633 YGRIWYFRDITDRKQSEEALRRSEQKYRNIFE 664


>gi|326804030|ref|YP_004321848.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651194|gb|AEA01377.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 623

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 167/401 (41%), Gaps = 32/401 (7%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQG--ETIDHLSEGVAVFGPDGRIK 457
            V V SN   G +      L+V+V  E + +T  + Q     + H+++GV       R+ 
Sbjct: 236 QVKVYSNDEMGVLAQSINYLSVRVR-EAQESTESERQRLDSVLKHMTDGVIATDRRSRVM 294

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           ++N     L   +E  +  G  I  +     +Y         F  ++ S  D        
Sbjct: 295 ITNNRACELIGKKEAEI-MGHSIMEVLNLRDKY--------TFRELLNSESDILMHFTSD 345

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               S    E S+I   +         +TD    E           K +  +  FV +VS
Sbjct: 346 DGQESIIKGELSVIQRESGYVSGLVWVLTDVTEHE-----------KIERDRRQFVSNVS 394

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT++  +++ L    +   +    +++  I   +  ++ +++D+L+L+ +D+  
Sbjct: 395 HELRTPLTSVRSYSEALADGAIKD-SELAVEFLGVIQRETDRMIRMISDLLNLSRMDSNR 453

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNI-----RIKVISDGKLGSFVADRQRLLQIFS 692
            ++N   I    L+N +       +   +       I+           AD+ RL Q+  
Sbjct: 454 QEMNLELIDFQGLVNHILDRFDMMIQSEDYVNEEYHIQRELTKSPIWVEADQDRLTQVID 513

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQ 750
            IL+NA+ +S  G T+ ++    + + I SV++ G  IP+     VF+RF         Q
Sbjct: 514 NILNNAIKYSPDGGTITVRLMTTHNEAILSVQDQGLGIPQKALGHVFDRFYRVDKARSRQ 573

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + G GLGL+I +  + LH G +  +S +   +T    +P +
Sbjct: 574 QGGSGLGLAIAKEVVELHHGKIWANSIENKGSTFFISLPFE 614


>gi|309807799|ref|ZP_07701731.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168901|gb|EFO70987.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
          Length = 612

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 175/416 (42%), Gaps = 30/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWMFENL-TVQVDLETKY-NTLVKVQGETID 441
            E       + NG  + HV V +N   G +    N+ +V+++   +  ++  +     + 
Sbjct: 208 EEMKDQALRISNGDYSGHVKVYANDEMGELARAFNILSVRIERSQEVSDSERRRLDNVLM 267

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N    +     EN +  G  I  +         E    DL +
Sbjct: 268 HMTDGVIATDRHGNITIINETALNFLDKTENEVK-GEPITQLLG-----LKEVTIQDLMS 321

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                      +    L L +D  L   +    +    +              L +  E 
Sbjct: 322 TQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICV--------------LHDITEQ 367

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            +  +E +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++
Sbjct: 368 QKNENEQR-QFVSNVSHELRTPLTSLRAYVEALNDGAWKNENI-APQFLGVIQNETERMI 425

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI---RIKVISDGKLG 678
            ++ND+L+L+ +D G++K++   + LND L+ +       +  + +   +I+ I   +  
Sbjct: 426 RMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQAL 485

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  +++Q+   I++NA+ +S  G  + ++  + +   I S+ + G  IP      +
Sbjct: 486 WVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRKDLSRI 545

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF         ++ G GLGL+I +  +  H G +   SS+   +T    IP ++
Sbjct: 546 FDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEK 601


>gi|262402984|ref|ZP_06079544.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
 gi|262350483|gb|EEY99616.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
          Length = 1586

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/402 (24%), Positives = 168/402 (41%), Gaps = 45/402 (11%)

Query: 419  LTVQVDLETKYNTLVKVQGE--------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT- 469
            LT  V    ++N  ++ Q E         ++   E   +    G IK+ N     ++   
Sbjct: 687  LTSMVKQREEWNLQLQNQKEKEVLRFKALLESSPEATLIVDTSGIIKMVNEEAEKVFGYG 746

Query: 470  ------EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELL 521
                            + +  A  +R+Y    G       + S + E   +    ++++ 
Sbjct: 747  RDELEGYPMHRLFLHDLESARAKHARWYELRPGNQRIEIAVRSDETEFPVEISSSSVQMD 806

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               ++  SI             N+TD +  E+ L +      +A + K+ F+ + S+E+R
Sbjct: 807  DGLLISVSI------------RNITDRLAFEQTLKKALHDAEQATQAKSVFLANTSHEIR 854

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +PL  I+G T LL      SL   Q + V+ I  S   LL +VND+LDL+ ++A  M L 
Sbjct: 855  TPLNAILGLTHLLSDE---SLTESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILE 911

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
               + L + L EV    +T+    N+  K+     L    +AD  RL QI + +LSNA+ 
Sbjct: 912  ALPLDLKEFLEEVASVFSTQAEAKNLDFKLEMGADLPHWVIADSMRLRQILTNLLSNALK 971

Query: 701  FSSKGSTVILKAAR---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            F+S G  + L+            +     FS+ + G  I E+  K +F  F        R
Sbjct: 972  FTSVGH-IALRVEVIDKFSWNGAEKNIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSR 1030

Query: 752  R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            R  G GLGLSIV   + L  G + + SS+   +T    +P +
Sbjct: 1031 RFGGTGLGLSIVHKLLGLMEGKIGVESSEGQGSTFWAEMPLQ 1072


>gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 703

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/451 (21%), Positives = 179/451 (39%), Gaps = 36/451 (7%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           A    E  +  +    + S  K       T    + +    +   N         E + +
Sbjct: 104 ARLYEEMADSGSQAPALRSTLKELAAQTGTQADWDSELYEEVTRLN--------NELVNL 155

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q  L  K+    +      ++ S+ ++    +  I  ++PA RSL   E   +   +   
Sbjct: 156 QRVLVKKFEKSEERYRLLAEYASDLISRHTTENIILYASPASRSLLGYEPEEILGRSGYE 215

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--- 538
            +        +     D     I   +      +   +       E ++ P+ N +T   
Sbjct: 216 FLHPK-----DMDRVGDNLREAIARLEPRLFQYRMRRKDGRYVWFESTVRPVQNMETGKV 270

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +    ++T+  RAE  L    E    AD  K++F+  VS+E+R+PL  IIG  DLL 
Sbjct: 271 QEVVFVTRDITERKRAEEELHMAKERAEAADRAKSAFLATVSHEIRTPLHGIIGMIDLLL 330

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   +L  +Q+ Y   I   S +L +++NDILD + ++AG ++L      L  ++N+V 
Sbjct: 331 DT---ALTEEQASYGRTIGELSRLLSSIINDILDFSKMEAGRIELEVVDYELRAVVNDVV 387

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILK 711
             +  +  + N+ I    D ++  F+  D  RL Q+   +  NA+ F+ KG     + + 
Sbjct: 388 NLLRVRSEQKNLDITCDIDREVPPFLRGDPIRLRQVLINLGGNAVKFTEKGKVALRIAMD 447

Query: 712 AARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
           +  +  D          F + + G  I +++   +F  F        RR  G GLGL+I 
Sbjct: 448 SRAEQSDPVNEVARFLRFEICDTGIGITDEVAPRLFQPFSQADMSTARRYGGTGLGLAIS 507

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  + L GG +   S     TT    +P  E
Sbjct: 508 KRLVELMGGEIGFRSIPGLGTTFWFTMPLLE 538


>gi|154490016|ref|ZP_02030277.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
 gi|154089458|gb|EDN88502.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
          Length = 720

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/507 (19%), Positives = 204/507 (40%), Gaps = 32/507 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT-----NPSNDE-LLEFL 359
           T   +  +NL + + ++D   YL   N +  +++      L       NP+  E +L  +
Sbjct: 220 TKFQQFFNNLPIGVELYDAEGYLIDINDADTKIFGSSREQLLGVNLFKNPAVPERILNQI 279

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           +        L +          Y S+ + +  + +  G  L+     +   G + +  + 
Sbjct: 280 KKKKAFSFPLAYDFNCIRDTRYYNSNISDEVKYLIVKGIGLNDREFGH--IGYLLIISDE 337

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T +   E +    + +    +      +  +    +    NP      +  +      ++
Sbjct: 338 TEKRVKEEQTQNNLAILKAVLLSGHSLIVEYDIGKKELFVNPLLNETPEDNKLFNYLRSN 397

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDE-----RKSLQGTLELLSDSVLEYSIIPLP 534
                    +    +D  +L   +I    D      R +++     +  +   Y      
Sbjct: 398 KYMTIGGVQQIVRSADNVNLLFQVIEGKQDHCSFECRTAIENETIWIRINAQAYKTKGSK 457

Query: 535 NAQTM-LTFVNVTDSVRAERALTE----------KNEALRKADEIKNSFVQHVSYELRSP 583
               M     N+T+    E  L            + + +R+AD++K++F+ ++S+E+R+P
Sbjct: 458 RQNKMICHITNITEEKLLEEKLHHAEYETRQSELEIQKVREADKLKSAFLANMSHEIRTP 517

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIGF+++L  +          ++V+ I+ +S +LL L+ DILD + +++G++  + S
Sbjct: 518 LNAIIGFSNILAETDDKEEK---EEFVKIINKNSDLLLRLITDILDFSKIESGVLDYSLS 574

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
              L D+ +E  Q  A KM E  + +    D     FV  D +R+ Q+ S ++SNA+ F+
Sbjct: 575 DTSLKDIFHEQFQVHAMKMPEK-VSLICDFDALPDIFVHTDPKRVTQVLSNLISNAVKFT 633

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             GS +           +  V + G  I     +++F+RFV       ++G GLGL+I +
Sbjct: 634 EVGS-IRFSYRIVEKYVLVEVIDTGIGISPQHQQAIFDRFVKVNSF--KQGTGLGLTICK 690

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
           + I    G + + S           +P
Sbjct: 691 TIIEALNGTIGVDSRPGEGARFWFTLP 717


>gi|153806245|ref|ZP_01958913.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
 gi|149130922|gb|EDM22128.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
          Length = 500

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/515 (22%), Positives = 215/515 (41%), Gaps = 43/515 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           + VN+Q  +  E+L+ L   + I D N  +   N+    L E+          +  +   
Sbjct: 1   MEVNEQTLYDDELLNILPDGVIILDINGKIIQLNQQ--ALTEL--------HVHSSVNTM 50

Query: 359 LRSANKLPEQLNWKTW--KENIFS-VYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG-- 411
           +     LP    +K    KE+I S + +     +  + LP    +   V  T  P  G  
Sbjct: 51  M----PLPTSQIFKLLNNKEDILSTILEKISQGERIYTLPEHTYIQEQVDHTQFPIRGEF 106

Query: 412 -----------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI--KL 458
                       ++ F N+TV++  E   NT ++       +     + F  D R    L
Sbjct: 107 ATIRNKGNLKTILFFFRNITVELTQEYILNTALQRTRIYPWYYDINRSEFTLDNRYFTHL 166

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
             PA  +   T E  +S   H  +       +  +  G + F   +  F   R    GT 
Sbjct: 167 GIPAGENNTLTMEEYVSM-IHPDDRQTMADAFVVQLSGIETFDKAV-PFRLRRG--DGTW 222

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E         + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S+
Sbjct: 223 EWFEGQSTYIANISGHPYRLVGICMSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSH 282

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GF+D++ ++     + +++ +V  IS +S  L+ L++DILDL+ +++  +
Sbjct: 283 EIRTPLNAIVGFSDVIASTYNELSDEERADFVRLISINSEHLVRLIDDILDLSKIESNTI 342

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           K  YS   L  ++ ++++  A K     I IK +          D  RL Q+    ++NA
Sbjct: 343 KFTYSCCSLKSMMKDIEKEQAVK-QLPEIEIKALLPDDDIYINTDATRLKQVICNFINNA 401

Query: 699 MDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
             F+ KG         +  +      V++ G  IP++  K +F+RF        ++G GL
Sbjct: 402 RKFTEKGYIHFGFTSHSEKDQLVYLFVEDTGEGIPQECQKEIFDRFYKVNTF--KQGTGL 459

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI ++ +    G +S+ S     +     +P K
Sbjct: 460 GLSICKTIVEHLQGSISVESEIGKGSRFIVTLPFK 494


>gi|304406984|ref|ZP_07388638.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304343971|gb|EFM09811.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 482

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/403 (22%), Positives = 164/403 (40%), Gaps = 37/403 (9%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V + S    G +   F  +   +D L    N         +  +S+ V  F  +G + +
Sbjct: 95  RVPIRSLDEIGDLAHAFNRMAGDLDSLIKDLNHEKDHLSSILRSMSDAVVTFDAEGSVTM 154

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP    L +   NRL        +              DL++ +I    D    +    
Sbjct: 155 SNPPGEKLIEKW-NRLDWEDEEAKLTGVPGPL------RDLYSRVIIDGIDSSSKIN--- 204

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             + + V    + PL + +++   V V   V  E           K ++++  FV +VS+
Sbjct: 205 --VRNGVWSVVMAPLKSDESVRGAVAVMRDVTEE----------FKLEKLRRDFVANVSH 252

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL+ + G+++ +          ++ + V+ I   S  +  LV D+LDLA ++AG  
Sbjct: 253 EIRTPLSMLQGYSEAILDG-FADSPEERDELVQVIHDESVRMGRLVKDLLDLARMEAGHT 311

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
           +L      +++L+  V +   T   E +IR+      +      AD  RL Q+ + +L N
Sbjct: 312 ELKLMPCDIDNLVKRVHRKFLTFAKERDIRLVCELPEQHLFMESADEDRLEQVLTNLLDN 371

Query: 698 AMDFSSKGSTVILKA--------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           A+  +  G+ + +            +       +K+ G  IP +    +F RF       
Sbjct: 372 ALRHTPAGAVITVSGKMRAEELGRSEPAYVELQIKDEGEGIPAEDLPYIFERFYKADKSR 431

Query: 750 QRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +R    G GLGL+IV++ +  H GH+ + S     TT    +P
Sbjct: 432 KRGSSSGTGLGLAIVKNIVESHEGHIHVDSLVGKGTTFTLLLP 474



 Score = 38.0 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 90/325 (27%), Gaps = 70/325 (21%)

Query: 272 GNNKSYKIVRVLNSFGEAGIAID------VSKEITVNDQLTHTYEILHNLTVAIAIFDQN 325
           GN ++   +R L+  G+   A +       S    +N +  H   IL +++ A+  FD  
Sbjct: 90  GNYRTRVPIRSLDEIGDLAHAFNRMAGDLDSLIKDLNHEKDHLSSILRSMSDAVVTFDAE 149

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             +   N                               KL E+ N   W++    +    
Sbjct: 150 GSVTMSNP---------------------------PGEKLIEKWNRLDWEDEEAKLTGVP 182

Query: 386 ETHKDTWHL--------------PNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLET 427
              +D +                 NG    V++          G + +  ++T +  LE 
Sbjct: 183 GPLRDLYSRVIIDGIDSSSKINVRNG-VWSVVMAPLKSDESVRGAVAVMRDVTEEFKLEK 241

Query: 428 KYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                       ++     +   SE +     DG           +    +  +  G  +
Sbjct: 242 LRRDFVANVSHEIRTPLSMLQGYSEAIL----DGFADSPEERDELVQVIHDESVRMGRLV 297

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           +++            G      +    D+  K +       +    E  I  +       
Sbjct: 298 KDLLDLAR----MEAGHTELKLMPCDIDNLVKRVHRKFLTFAK---ERDIRLVCELPEQH 350

Query: 541 TFVNVTDSVRAERALTEKNEALRKA 565
            F+   D  R E+ LT   +   + 
Sbjct: 351 LFMESADEDRLEQVLTNLLDNALRH 375


>gi|298243490|ref|ZP_06967297.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556544|gb|EFH90408.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 403

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 161/381 (42%), Gaps = 23/381 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   ET       V    + H  + + V   D R++ SNPA R + +    +       
Sbjct: 26  RRKREETVPLERELVLTSFMTHSPDALLVLDKDFRLRESNPAAREMLRLPVGKPGTLWKC 85

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY------SIIPLP 534
           R +     +  N  +     +  +     + + LQ   ELL  +  E       S+ P+ 
Sbjct: 86  REVLR--CKNLNRMELCGTSSCPLARVLQQDEPLQNE-ELLVGAKEEIFCEVSTSVTPIH 142

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A        + D    + A           ++++++FV  VS+ELR+PL ++ GF +LL
Sbjct: 143 IAAEPYAVWALRDLSALKVA-----------NQVRSNFVSMVSHELRTPLNSVHGFIELL 191

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +G LN +Q  Y+ Y       L+++V DIL +   D G  +     + L +L+  V
Sbjct: 192 WQGHMGELNDEQRLYLGYAQEGVQQLISIVEDILFMTRSDLGQFETKQQGVQLLELVRLV 251

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            QS+  +  +  + + +    +      D QR+ Q+ + ++SNA+ ++  G +V + A+ 
Sbjct: 252 TQSLQPQAVKAGVALVLEIVPETPLLYVDPQRIKQVLNNLISNAIKYTPPGGSVTITASV 311

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
            +  F   SV + G  I  +    +F RF  + H  Q    G GLGLSI    +  HGG 
Sbjct: 312 HDARFQMISVTDTGYGIQVEDRPHIFERFYQSNHSQQSKMGGYGLGLSIARLIVEQHGGT 371

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +S  +     ++    +P  E
Sbjct: 372 ISFDTVVGKGSSFYFTLPILE 392


>gi|322419402|ref|YP_004198625.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125789|gb|ADW13349.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 771

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/586 (19%), Positives = 217/586 (37%), Gaps = 43/586 (7%)

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKS----YKIVRVLNSFGEAGIAIDVSKEI 299
            +  ++K +IS  +      E V T    + +        V  L     A + +   +E 
Sbjct: 170 LRAALQKIIISPVSTLVETVEQVRTRADYSRRVPASGVDEVARLGQSFNAMMEVIKERED 229

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN---DELL 356
            ++        IL N    I        +   NR+   L       +    +     +  
Sbjct: 230 DLHRLTLFQRTILDNAAYGIISTTTEGIVSSFNRAAECLLGYTAGEVIGKLTPVCWHDQE 289

Query: 357 EFLRSANKLPEQLNWKTWK--ENIFSVYKSSETHKDTWH--LPNGQTLHVIVT------- 405
           E  R A +L E+L        E      + +   ++ W     +G  + V+++       
Sbjct: 290 EISRRALQLSEELGETVAPGFEVFAVRLRRNLAEENEWTYIRKDGTRVPVLLSVTALRGE 349

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S+   G + +  +LT +  +E                    +      G I   N  F +
Sbjct: 350 SDQVTGFVGLTYDLTERKRVEEALRFSEARYRALHRDNPTMIFTLDAQGTILTVN-TFGA 408

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +          G  +  +  +                  + +    + ++   ELL    
Sbjct: 409 IQLGYAMEELVGESVLKVLHSEDHNAAFEQLRLCVQHPTSVYRRHFRKIRKDGELLWVDE 468

Query: 526 LEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEAL------------------RKAD 566
           +  ++  L  +   ++  +++T+  +AE  L      L                  ++ D
Sbjct: 469 VAQAVNDLNGSLNILVVCLDITERKKAEEELNRYKTHLETLVQERTAELERANVRLQELD 528

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K+ F+   S+ELR+PL  IIGFT +      G LN +Q   +  +  S+  LL L+ D
Sbjct: 529 RLKSMFIAATSHELRTPLNAIIGFTGMTLQGLSGELNEEQQDNLARVYRSAKHLLALITD 588

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           I+D++ ++AG + +      L +L++E    +  ++   ++ ++      L +  ADR+R
Sbjct: 589 IIDISKIEAGKISIFPEEFPLEELVDEAIAIVTPQLKGKSLSLERELPAAL-TVYADRKR 647

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           LLQ    +LSNA  F+ KG  +I+ A    G    SVK++G  I       +F  F    
Sbjct: 648 LLQCLVNLLSNAAKFTEKG-RIIVAARESEGSIELSVKDSGIGIAPQDLPRLFKPFERLE 706

Query: 747 H--RGQRRGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIP 789
              R Q  G GLGL +    + ++  G +S+ S +   +T    +P
Sbjct: 707 SHLRVQAGGTGLGLYLTAKLVADVLRGTISVQSREGEGSTFTLSLP 752



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 83/280 (29%), Gaps = 38/280 (13%)

Query: 83  TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ--S 140
            + W  ++E      QL + +           F   L+ +           +RK+G    
Sbjct: 282 PVCWHDQEEISRRALQLSEELGETVAPG-FEVFAVRLRRNLAE--ENEWTYIRKDGTRVP 338

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
             L        + ++ G               G+  +L E     + L    + ++ L  
Sbjct: 339 VLLSVTALRGESDQVTG-------------FVGLTYDLTERKRVEEALRFSEARYRALHR 385

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEI------KKRMI 253
               +++  D  G IL  N          G   ++ +GES  K+   E       + R+ 
Sbjct: 386 DNPTMIFTLDAQGTILTVNTF---GAIQLGYAMEELVGESVLKVLHSEDHNAAFEQLRLC 442

Query: 254 SSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
                           + G           +  +  S     + +D+++     ++L   
Sbjct: 443 VQHPTSVYRRHFRKIRKDGELLWVDEVAQAVNDLNGSLNILVVCLDITERKKAEEELNRY 502

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
              L  L     + ++   L+  N    EL  +   F+A 
Sbjct: 503 KTHLETL-----VQERTAELERANVRLQELDRLKSMFIAA 537


>gi|219850592|ref|YP_002465025.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219544851|gb|ACL26589.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 913

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/665 (17%), Positives = 239/665 (35%), Gaps = 85/665 (12%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD--ILWANISYKKNTETE 229
             +  ++A+   +  +L           + +   +   D   D  I++ N ++   +   
Sbjct: 17  TELAQQIADLQAEITRLRTQNRFLLAAVNEMASGMIVTDAGADQPIVFVNRAF---STIT 73

Query: 230 GIVFQKAIGESRKLF-----KEEIKKRMISSSALEKNFCETV-STLEHGNNKS--YKIVR 281
           G    + +G + +             R+  + A  +   E + +  + G        I  
Sbjct: 74  GYAPNEVLGRNCRFLQGPQTDAATVARLREAIAAARPIQERILNYRKDGQPFWNQLSISP 133

Query: 282 VLNSFGEA----GIAIDVSKEITVNDQLTHTYEILH-------------NLTVAIAIFDQ 324
           V +  G      G+  DV+ ++ V   L    ++L              +L     ++ +
Sbjct: 134 VRDETGNVVAFVGVQTDVTAQVAVEQALAEREQLLRAVEKMASVGGWELDLATGTMVWSE 193

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
                       E++ I    +   P + EL++F       P +++       I  VY+ 
Sbjct: 194 ------------EMFAIHELPVGDIPPSPELIDF------YPAEVH-----HLINEVYER 230

Query: 385 SETHKDTWHLP--------NGQTLHVIVTSNPRGGTI----WMFENLTVQVDLETKYNTL 432
                  W L         N + +  I       G I      F+++T   + E      
Sbjct: 231 CLATGAEWDLALPFRTAKGNLRWVRSIGQPVWENGRIVKLRGTFQDITRTKENELALRAS 290

Query: 433 VKVQGETIDHLSEGVAV-FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            +      D L   + + F  D R+ L+     + +     +L                 
Sbjct: 291 EQRYRMLADMLPGTIVLMFNTDFRLTLAAGPELARFGVTSAQLE--------GRLLPELL 342

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
            E     L        +     +   +  ++   ++L   I P   +  ++   N+T   
Sbjct: 343 PEPHYSKLLPLCYEVLNGATHRIDYVVDHQVFDTTLLPIEITPGHVSGGLIVGRNITVER 402

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L    EA  +A+  + SF+  +S+E+R+PL  +I  T++L     G L  +Q  +
Sbjct: 403 QIATDLLRAKEAAEQAERARTSFLAAISHEMRTPLNAVIASTEVLLR---GGLTDEQRDF 459

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I   S  LL L+N++LDL+ ++AG ++L      L  ++  V +    +     + +
Sbjct: 460 VETIRIGSESLLTLINNVLDLSKLEAGQVELEPKPTDLRAIITTVCELFRREAVRKGLHM 519

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARDNGDFIFSVK 724
            V  D  L    + D  R+ QI + ++SNA+ F+  GS  + ++    A D       V 
Sbjct: 520 GVRIDPALPPLVIVDGVRVRQIVTNLVSNAIKFTDHGSVSITVELLDVADDRCQVAIRVS 579

Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  I  +    +F  F+   + + +R G  LGL+I     +L GG +   S     +T
Sbjct: 580 DTGIGITSEHLPKLFQPFIRYRSEQVRRDGARLGLAISAQLASLMGGELRADSRLGEGST 639

Query: 784 INCRI 788
               +
Sbjct: 640 FTLSL 644


>gi|77359054|ref|YP_338629.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873965|emb|CAI85186.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1120

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 128/252 (50%), Gaps = 9/252 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +    +  E+ L    E   +A   K+ F+  +S+E+R+P+  ++G  +++K +K   L
Sbjct: 581 YSSQKRIETEQQLVTAKETAEQAVAAKSEFLASMSHEIRTPMNGVLGMLNIVKNTK---L 637

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  ++E   +S+  LLN++NDILD + ++AG + +      L  LL EV +S A K 
Sbjct: 638 DQQQMHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKIQFNLPRLLGEVVESFALKA 697

Query: 663 HENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718
            +NN  + + +    +   V+D  RL QI S ++SNA+ F+  G  V+   +    D   
Sbjct: 698 EQNNTILILDATLITVSEIVSDPNRLRQILSNLISNAVKFTFDGKIVVTAKIDETTDGTS 757

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            + S+ + G  I  +   ++F+ F        R   G GLGL+IV+    L GG VS++S
Sbjct: 758 LVCSIIDTGIGIKPEKHSTLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMGGEVSVTS 817

Query: 777 SDEGVTTINCRI 788
                +T +  I
Sbjct: 818 MLNEGSTFSFSI 829


>gi|227879007|ref|ZP_03996903.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256844226|ref|ZP_05549712.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849374|ref|ZP_05554807.1| two-component system response regulatory system histidine kinase
           [Lactobacillus crispatus MV-1A-US]
 gi|262047879|ref|ZP_06020827.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380063|ref|ZP_06626159.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus
           214-1]
 gi|295691936|ref|YP_003600546.1| sensor protein [Lactobacillus crispatus ST1]
 gi|227861396|gb|EEJ69019.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256613304|gb|EEU18507.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714150|gb|EEU29138.1| two-component system response regulatory system histidine kinase
           [Lactobacillus crispatus MV-1A-US]
 gi|260571823|gb|EEX28396.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923377|gb|EFE00284.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus
           214-1]
 gi|295030042|emb|CBL49521.1| Sensor protein [Lactobacillus crispatus ST1]
          Length = 617

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 175/420 (41%), Gaps = 37/420 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K   H+ +G  +  V + SN   G +   F  L+V+++  + + ++  +     + 
Sbjct: 211 EEMQKQALHIADGDYSSQVKIYSNDELGQLAKAFNTLSVRIERSQEESDSERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    +    +E+ +     I  +         ++   DL +
Sbjct: 271 HMSDGVLATDRHGNVSVVNHMALNFLNKKEDEVIN-KPIAEVLG-----LEDTSSQDLIS 324

Query: 502 AIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +        +K +  TL+     + +L  S   +      ++          E+      
Sbjct: 325 S--------QKEIVITLDPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTEQQ----- 371

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K ++ +  FV +VS+ELR+PLT++  + + L      +      +++E     ++ 
Sbjct: 372 ----KNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKN-PEIAPKFLEVTQQETSR 426

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI------RIKVIS 673
           ++ ++ND+L L+ +D G+ K++   + LND +N +       +  +         IK   
Sbjct: 427 MIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKREL 486

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +      D  +++Q+   I++NA+ +S  G  + ++  ++    I S+ + G  IP  
Sbjct: 487 GSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNHVILSISDQGLGIPRK 546

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P +
Sbjct: 547 DLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLPYE 606


>gi|298248741|ref|ZP_06972546.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551400|gb|EFH85266.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 821

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/649 (17%), Positives = 240/649 (36%), Gaps = 62/649 (9%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G  +++ E     ++L      ++ L +++  LVW       + + N    +  +     
Sbjct: 202 GTCTDIDEQKRTEQRLKESEENWQTLAETVPQLVWRVQPDSWVDYVNQ---RACDYGQTT 258

Query: 233 FQKAIGESRKLF---KEEIKKRMISSSALEK----NFCETVSTLEHGNNKSY--KIVRVL 283
            ++ +G          ++ ++R+    A            +   + G  + +  + + V 
Sbjct: 259 REQLLGHGWHYLLHPDDKERERVTLDHAFRTGIPYEVEFRLREGQTGCYRWFLTRGMPVC 318

Query: 284 NSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSF 335
           +  G+     G   D+ ++     QL  + E L  L   +         +  L + N+ +
Sbjct: 319 DETGQVIKWFGTCTDIEEQKRAEQQLKESEENLRVLAETVPQLVWTTRADNRLDYCNQRY 378

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            E           + + ++L          PE+   +          ++ E  +    L 
Sbjct: 379 CEYT---------HAAFEQLQGHGWRQFLHPEEA--EGILALRHQTLETGEPFESECRLR 427

Query: 396 NGQT---LHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           NGQT      +    P     G  +  F    ++  Q  +E       +     ID    
Sbjct: 428 NGQTGEYRWFLARGTPVRDETGQIVRWFGTNTDIEDQKRIEEALRQSQERIRALIDSNII 487

Query: 446 GVAVFGPDGRIKL-SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           G+     +  + + +N AF  L    +  +   T                +    F   I
Sbjct: 488 GIVSVEGEEEVLVEANEAFLHLTGYTQEDMRSKT-------LNRVKITPPEHASFFERAI 540

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
              +   +      E++     + S +P+     +       +  R   +    N A ++
Sbjct: 541 QEVNARGQHTPLETEVICK---DGSRLPVLVGSVIF-----QERPRQTISFVLDNSARKE 592

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            ++ K++F+   S+EL++PLT +   T LL            +  +  +      +  LV
Sbjct: 593 LEQRKDAFISMASHELKTPLTALKLQTALLHRQLAKQGIPASAPALSNMEGQINKVTRLV 652

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +++LD++ + AG ++    T+ L+ LL E+ +++      + I ++ I +  L   + DR
Sbjct: 653 DELLDVSKIQAGRLEYLQETVNLDALLREITETMQQTSPSHRIVVRGIVETSL---IGDR 709

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+F  ++SNA+ +S    TV +  +         V+++G  IP + C  +F+RF  
Sbjct: 710 DRLGQVFINLISNAIKYSPDAKTVEMDLSASEDAVTIQVRDHGLGIPREQCDKIFDRFYR 769

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                Q+   G+G+GL IV   +  H G +++ S     +T    +P K
Sbjct: 770 VTDPKQKAIHGLGMGLYIVAEIVKRHRGTITVDSEVGKGSTFTVTLPRK 818



 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/426 (11%), Positives = 127/426 (29%), Gaps = 56/426 (13%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G  +++ +     ++L      ++VL ++L  LV          + N  ++         
Sbjct: 73  GTCTDIEDRKQAEQQLKASEENWRVLAETLPQLVMVARPNNQNEYTNQRWRDYIGFTVEQ 132

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKN------FCETVSTLEHGNNKSY--KIVRVLN 284
            Q       +    + ++   +     ++        E +   + G  + +  + + V +
Sbjct: 133 TQSDRWAYLQFIHPDDREGARAHRQHAQDTGEMYEHEERLRNSQTGTYRWFLTRAMPVYD 192

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFV 336
             G+     G   D+ ++     +L  + E    L   +         + ++ + N+   
Sbjct: 193 EAGQLVKWFGTCTDIDEQKRTEQRLKESEENWQTLAETVPQLVWRVQPDSWVDYVNQRAC 252

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           +  +     L  +  +  L              + +  +  +   +++   ++  + L  
Sbjct: 253 DYGQTTREQLLGHGWHYLL-----------HPDDKERERVTLDHAFRTGIPYEVEFRLRE 301

Query: 397 GQT---LHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           GQT      +    P     G  I  F    ++  Q   E +     +      + + + 
Sbjct: 302 GQTGCYRWFLTRGMPVCDETGQVIKWFGTCTDIEEQKRAEQQLKESEENLRVLAETVPQL 361

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V     D R+   N  +                   +     R +   +  +   A+   
Sbjct: 362 VWTTRADNRLDYCNQRYCEYTHAA---------FEQLQGHGWRQFLHPEEAEGILALRHQ 412

Query: 507 FDDERKSLQGTLELLSDSVLEYSI-----IPLPNA-----QTMLTFVNVTDSVRAERALT 556
             +  +  +    L +    EY        P+ +      +   T  ++ D  R E AL 
Sbjct: 413 TLETGEPFESECRLRNGQTGEYRWFLARGTPVRDETGQIVRWFGTNTDIEDQKRIEEALR 472

Query: 557 EKNEAL 562
           +  E +
Sbjct: 473 QSQERI 478



 Score = 44.9 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 69/229 (30%), Gaps = 25/229 (10%)

Query: 364 KLPEQLNWKTW--------KENIFSVY----KSSETHKDTWHLPNGQT---LHVIVTSNP 408
             PEQL    W        ++     +    ++   ++  + +  G+T      +    P
Sbjct: 1   MTPEQLQGDRWIACLHPADRQRTLEAWQTAIRTQTLYEVEYRMQQGRTGAYRWFLARGMP 60

Query: 409 ----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
               +G  +  F    ++  +   E +     +      + L + V V  P+ + + +N 
Sbjct: 61  RKDNQGTILHWFGTCTDIEDRKQAEQQLKASEENWRVLAETLPQLVMVARPNNQNEYTNQ 120

Query: 462 AFRSLWKTE--ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTL 518
            +R        + +     +++ I                    +   ++  R S  GT 
Sbjct: 121 RWRDYIGFTVEQTQSDRWAYLQFIHPDDREGARAHRQHAQDTGEMYEHEERLRNSQTGTY 180

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                  +          +   T  ++ +  R E+ L E  E  +   E
Sbjct: 181 RWFLTRAMPVYDEAGQLVKWFGTCTDIDEQKRTEQRLKESEENWQTLAE 229


>gi|295696418|ref|YP_003589656.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
 gi|295412020|gb|ADG06512.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
          Length = 590

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 152/373 (40%), Gaps = 29/373 (7%)

Query: 424 DLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           DLE     L    +     +  L++GV      G++ L+NP  R   +            
Sbjct: 234 DLEENIKALSKEKEQLANILASLADGVVSADLTGKVLLANPPARRWLRALSMAEEGQPSE 293

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +          S  +++   +I + + +++ + G         +  ++ PL    +  
Sbjct: 294 NRLP---------SQLFEVEQKVIETKEAQQREVVG-----QGRTMAITMAPLYEPGS-- 337

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                  ++R   A+          + ++  FV +VS+ELR+PL+ + G+++ L    + 
Sbjct: 338 ------QALRGVVAVLRDITEQLNIERMRRDFVANVSHELRTPLSMLQGYSEALVDDFID 391

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +  E I   +  +  LVND+LDLA +++G   +    + +  L+ ++ +  + 
Sbjct: 392 D-PEQRRELAEIILEETLRMRRLVNDLLDLAQLESGRFVMKRQPVDVRPLIQKIWRKFSA 450

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              E  +   +         V AD  RL Q+ + ++ NA   +    +V ++ +      
Sbjct: 451 LAQERKLTFHLEMQVDDPVIVDADVDRLEQVLTNLIDNAFRHTQPPGSVTIRFSVSQDTA 510

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +V++ G+ IP +    ++ RF     A    R G GLGL+I  + +  H G +++ S 
Sbjct: 511 RIAVEDQGAGIPPEDIPYIWERFYKVDKARTRNRGGTGLGLAIARNIVLQHDGDITVESR 570

Query: 778 DEGVTTINCRIPS 790
               TT    +P 
Sbjct: 571 LGKGTTFTVLLPL 583



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 76/286 (26%), Gaps = 31/286 (10%)

Query: 291 IAIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLAT 348
           +A D+ +    ++ +      IL +L   +   D    +   N      L  + +A    
Sbjct: 231 LAHDLEENIKALSKEKEQLANILASLADGVVSADLTGKVLLANPPARRWLRALSMAEEGQ 290

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
              N    +      K+ E    +  +  +    ++        + P  Q L        
Sbjct: 291 PSENRLPSQLFEVEQKVIETK--EAQQREVVGQGRTMAITMAPLYEPGSQALR------- 341

Query: 409 RGGTIWMFENLTVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
             G + +  ++T Q+++E             ++     +   SE +     D  I     
Sbjct: 342 --GVVAVLRDITEQLNIERMRRDFVANVSHELRTPLSMLQGYSEALV----DDFIDDPEQ 395

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                    E  L     + ++                         D R  +Q      
Sbjct: 396 RRELAEIILEETLRMRRLVNDLLDLAQLESGRFVMKRQPV-------DVRPLIQKIWRKF 448

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           S    E  +      Q     +   D  R E+ LT   +   +  +
Sbjct: 449 SALAQERKLTFHLEMQVDDPVIVDADVDRLEQVLTNLIDNAFRHTQ 494


>gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 536

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 26/369 (7%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC-SRYYNESDGWDLFA--A 502
           G+ +   + +I L+N  F      +E  L              +R     +    F+  +
Sbjct: 19  GILILNENFKIILTNHWFLKRSFLDEQHLDNKLIFDVFPELVGTRTLKSIEQCLEFSQYS 78

Query: 503 IITS---------FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           I+T          FD+E+K  +         V+  SI    N   M+   +V+  V  E+
Sbjct: 79  ILTHTLNPFPFPLFDNEQKIEKKERIYQYLHVIPISIDDEQNRFCMIQITDVSQQVTREK 138

Query: 554 ALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            L E+    ++ +       + K  F+  +S+E+R+PL  I+G  D L  +   +L ++Q
Sbjct: 139 LLREQMVVAKEREVEAKKASQAKTDFLASMSHEIRTPLNAILGMADTLTET---NLTNEQ 195

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+  +  S   L N++NDILDL+ +++G +++ +    + DLL E       K     
Sbjct: 196 MEYLTVLRNSGKALYNIINDILDLSRIESGKLEIEHIEFSIRDLLKETISLFLMKAKSKG 255

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVK 724
           I+I   +SD        D  R+ QI   ++ NAM F+  G   V    ++D       V+
Sbjct: 256 IQISYSVSDDIAEQIKGDSTRIQQILINLIGNAMKFTEIGKIYVDASLSQDQKSLCLIVE 315

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +   S+F  F        RR  G GLGL+I +  I +  G +S+ S     +
Sbjct: 316 DTGIGIPNEKLNSIFESFTQVDSSTTRRYGGTGLGLTITKKLILMMNGEISVQSQLGKGS 375

Query: 783 TINCRIPSK 791
                IP +
Sbjct: 376 KFVLNIPYE 384


>gi|312977020|ref|ZP_07788769.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05]
 gi|310896348|gb|EFQ45413.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05]
          Length = 620

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 175/420 (41%), Gaps = 37/420 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K   H+ +G  +  V + SN   G +   F  L+V+++  + + ++  +     + 
Sbjct: 214 EEMQKQALHIADGDYSSQVKIYSNDELGQLAKAFNTLSVRIERSQEESDSERRRLDSVLS 273

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    +    +E+ +     I  +         ++   DL +
Sbjct: 274 HMSDGVLATDRHGNVSVVNHMALNFLNKKEDEVIN-KPIAEVLG-----LEDTSSQDLIS 327

Query: 502 AIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +        +K +  TL+     + +L  S   +      ++          E+      
Sbjct: 328 S--------QKEIVITLDPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTEQQ----- 374

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K ++ +  FV +VS+ELR+PLT++  + + L      +      +++E     ++ 
Sbjct: 375 ----KNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKN-PEIAPKFLEVTQQETSR 429

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI------RIKVIS 673
           ++ ++ND+L L+ +D G+ K++   + LND +N +       +  +         IK   
Sbjct: 430 MIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKREL 489

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +      D  +++Q+   I++NA+ +S  G  + ++  ++    I S+ + G  IP  
Sbjct: 490 GSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNHVILSISDQGLGIPRK 549

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P +
Sbjct: 550 DLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLPYE 609


>gi|56478892|ref|YP_160481.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56314935|emb|CAI09580.1| putative sensory transduction histidine kinase of highly complex
            domain structure [Aromatoleum aromaticum EbN1]
          Length = 1519

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/545 (18%), Positives = 201/545 (36%), Gaps = 54/545 (9%)

Query: 281  RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
             V     E   A+D                I       + I   + Y +  N +F     
Sbjct: 567  EVAEQTAELTRALDARLAAEDERD-----RIFEQSVDLLGIVGIDGYFKRVNPAFARTLG 621

Query: 341  IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                   + P     L+F+      P+ +          +   ++   ++ +   +G   
Sbjct: 622  WSNEEFLSRP----YLDFVH-----PDDVEGTRADAARVAAGHTTVGFENRYRCKDGNWR 672

Query: 401  HVIVTSNPRGGTIWMFE--NLTVQVDLETKYNTLVKVQ---------------------G 437
             +   + PR G +      + T + +      TL                          
Sbjct: 673  WLEWKAVPRTGGLMFVTAIDTTQRRENARHLRTLNAELVHRVDEREAALEALGAKKDEIR 732

Query: 438  ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
              +D+L E V      G ++ +N A  +++      +  G ++  +  +  R  ++    
Sbjct: 733  AVLDNLIECVVTINAQGIVQGANAAVEAVFGYPLGEV-IGRNVSLLMPSPERERHDDYLA 791

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERA 554
                          + ++G  +L     +E S+           + T  ++++      A
Sbjct: 792  RYLDTGARHVIGSTREVEGQHKLGHRIPMELSVAEYRVRDEQFFVGTLRDISERKAFIAA 851

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            LT   E   +A   K++F+  +S+E+R+P+  ++G  ++L  +   SL+  Q+  V  I 
Sbjct: 852  LTRAREDAEQASRAKSAFLAAMSHEIRTPMNGVMGLIEVLART---SLSEHQADLVATIC 908

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             SS+ LL +++DILD + ++AG +KL+   + + DL+  +  S+       ++ + V   
Sbjct: 909  GSSSTLLRIIDDILDFSKIEAGRLKLDVRPVSIGDLVESLAGSLLPLAARLDVDLSVFVS 968

Query: 675  GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKNN 726
             ++     AD  RL Q+   ++ NA+ FS+    V  + A               S+ +N
Sbjct: 969  PEVPERVEADEVRLRQVLYNLVGNAVKFSAGRQNVRGRVAVRVAVADVVPLQLAVSIVDN 1028

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I  +  + +FN F        RR  G GLGL+I    ++L  G + + S     +T 
Sbjct: 1029 GIGIDPEKVEELFNPFTQAEASTTRRFGGTGLGLAICRRLVDLMEGGIKVRSEPGQGSTF 1088

Query: 785  NCRIP 789
               IP
Sbjct: 1089 TVTIP 1093



 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/310 (9%), Positives = 70/310 (22%), Gaps = 36/310 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  + AE T               +F+    L+      G     N ++ +        F
Sbjct: 568 VAEQTAELTRALDARLAAEDERDRIFEQSVDLLGIVGIDGYFKRVNPAFARTLGWSNEEF 627

Query: 234 QKAIGES---RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG-EA 289
                         +         ++       E     + GN +  +   V  + G   
Sbjct: 628 LSRPYLDFVHPDDVEGTRADAARVAAGHTTVGFENRYRCKDGNWRWLEWKAVPRTGGLMF 687

Query: 290 GIAIDVSKEITVNDQLT-------------------------HTYEILHNLTVAIAIFDQ 324
             AID ++       L                              +L NL   +   + 
Sbjct: 688 VTAIDTTQRRENARHLRTLNAELVHRVDEREAALEALGAKKDEIRAVLDNLIECVVTINA 747

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              +Q  N +   ++   L  +     +  +    R  +         T   ++    + 
Sbjct: 748 QGIVQGANAAVEAVFGYPLGEVIGRNVSLLMPSPERERHDDYLARYLDTGARHVIGSTRE 807

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV-------DLETKYNTLVKVQG 437
            E      H    +              +    +++ +                  + + 
Sbjct: 808 VEGQHKLGHRIPMELSVAEYRVRDEQFFVGTLRDISERKAFIAALTRAREDAEQASRAKS 867

Query: 438 ETIDHLSEGV 447
             +  +S  +
Sbjct: 868 AFLAAMSHEI 877


>gi|283850599|ref|ZP_06367886.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573842|gb|EFC21815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 577

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/561 (19%), Positives = 213/561 (37%), Gaps = 90/561 (16%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +     ++L     +L     AI + D +   +     +   +   D   L      +EL
Sbjct: 37  ELKRRLEELERFRSLLDQTGEAIFLVDGRTGRITDAAGAAGTMLRQDRQALVGR-LFEEL 95

Query: 356 L-----EFLR-------SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           L     + LR       +A ++   L     +  +      S + + T+ L +G+   + 
Sbjct: 96  LPQEAVDHLRGLFSGDFAAGRIETVLGRPGVRGGV------SPSVEVTFRLASGEEGPI- 148

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                    I +  ++T +   E       +     +++ +EG+     DGR+  +NPA 
Sbjct: 149 --------AIIVARDVTERKKNEQALKRAEEKYRGIVENAAEGIFQSSLDGRLISANPAM 200

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD-------------- 509
            SL        S    +R I     +     +      + +T +D               
Sbjct: 201 ASLLGYA----STRELMRRIKNVVDQIVTHPEDRQRIRSELTRYDQVKNLEVQMTTKTGN 256

Query: 510 ---------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEK 558
                      +   G  E    S+ + ++      QT+L + +  ++  AER   LT  
Sbjct: 257 TIWGLINARRIRDAAGEPERFDGSLQDVTVRK-KAEQTLLRYHDELETRVAERTAELTRI 315

Query: 559 NEALRK--------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS------- 597
           NE L                A+  K+ F+  VS+E+R+PLT+++GF  +++         
Sbjct: 316 NERLTHEVTIRKRAEEAAEAANRAKSDFLSMVSHEIRTPLTSVLGFAVIIEKRLEQLFLP 375

Query: 598 ------KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
                 +      +  + +  I +    L +L+ND+LDLA ++AG M      +   +++
Sbjct: 376 LLDRDPRRRRQAEQVMENLGIIVSEGERLKHLINDVLDLAKLEAGKMAFKQERVDPAEVV 435

Query: 652 NEVK-QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V   S+        + +    +G+L   + DR RL+Q+   ++SNA+ F+ +GS V  
Sbjct: 436 RHVMSASVGLLSSHKKVSLDTRIEGRLPEVLGDRDRLIQVLVNLVSNALKFTERGS-VTC 494

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLH 768
           +A  +    +  V + G  IPE     VF +F         + +G GLGL+I +  +  H
Sbjct: 495 RARTEGHYIVVDVTDTGIGIPESEQHKVFEKFNQIGATLTNKPKGTGLGLAICKHIVESH 554

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +   S     +T    +P
Sbjct: 555 GGRIFYVSKPGSGSTFTFTLP 575



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 85/280 (30%), Gaps = 39/280 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQ-AGDILWANISYKKNTET----------EGIV 232
           + K+    +  F+ L D     ++  D   G I  A  +                 E ++
Sbjct: 37  ELKRRLEELERFRSLLDQTGEAIFLVDGRTGRITDAAGAAGTMLRQDRQALVGRLFEELL 96

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
            Q+A+   R LF  +     I +          VS        ++++           +A
Sbjct: 97  PQEAVDHLRGLFSGDFAAGRIETVLGRPGVRGGVSPSVE---VTFRLASGEEGPIAIIVA 153

Query: 293 IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            DV++       L    E    I+ N    I     +  L   N +   L          
Sbjct: 154 RDVTERKKNEQALKRAEEKYRGIVENAAEGIFQSSLDGRLISANPAMASLLGY------- 206

Query: 349 NPSNDELLEFLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
             S  EL+  +++     +    + +  +  +   Y   +  +       G T+  ++ +
Sbjct: 207 -ASTRELMRRIKNVVDQIVTHPEDRQRIRSELTR-YDQVKNLEVQMTTKTGNTIWGLINA 264

Query: 407 NPRGGTI-------WMFENLTVQVDLET---KYNTLVKVQ 436
                            +++TV+   E    +Y+  ++ +
Sbjct: 265 RRIRDAAGEPERFDGSLQDVTVRKKAEQTLLRYHDELETR 304



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 84/281 (29%), Gaps = 41/281 (14%)

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDET-PEIIGQLHQRIDIPQTDTDLLSFENWL 119
            L    ++L ++ SLL +      + DG+     +  G     +   +       FE  L
Sbjct: 37  ELKRRLEELERFRSLLDQTGEAIFLVDGRTGRITDAAGAAGTMLRQDRQALVGRLFEELL 96

Query: 120 KFHHYIKLSKATEKLRK--EGQSFDLVAETQNDCA---------IKIEGRVSGSC----A 164
                    +A + LR    G       ET              +++  R++       A
Sbjct: 97  P-------QEAVDHLRGLFSGDFAAGRIETVLGRPGVRGGVSPSVEVTFRLASGEEGPIA 149

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            +       +  ++ E     + L      ++ + ++    ++     G ++ AN +   
Sbjct: 150 II-------VARDVTERKKNEQALKRAEEKYRGIVENAAEGIFQSSLDGRLISANPAMAS 202

Query: 225 NTETEGIVF-----QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--Y 277
                         +  + +     ++  + R   +   +    E   T + GN      
Sbjct: 203 LLGYASTRELMRRIKNVVDQIVTHPEDRQRIRSELTRYDQVKNLEVQMTTKTGNTIWGLI 262

Query: 278 KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHN 314
              R+ ++ GE     G   DV+        L   ++ L  
Sbjct: 263 NARRIRDAAGEPERFDGSLQDVTVRKKAEQTLLRYHDELET 303


>gi|241895844|ref|ZP_04783140.1| histidine protein kinase; sensor protein [Weissella
           paramesenteroides ATCC 33313]
 gi|241870887|gb|EER74638.1| histidine protein kinase; sensor protein [Weissella
           paramesenteroides ATCC 33313]
          Length = 627

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/404 (21%), Positives = 169/404 (41%), Gaps = 40/404 (9%)

Query: 402 VIVTSNPRGGTIWMFENLTVQV--DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           ++V +N   G +    N+  +   +     +   +     ++H+++GV      G I + 
Sbjct: 232 IVVRTNDEIGKLAQDVNVLAERIEETTNSMDFERRRLDSVLEHMTDGVIATDRRGNINII 291

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-- 517
           N A   +    EN+ + G  I +I     + Y+  D  D    ++  F  +   L     
Sbjct: 292 NIAALRMTGLSENQKANGRSILDILRIADQ-YSLRDLLDNRHELLLDFSTDEHPLMIRAY 350

Query: 518 ---LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
              +E  S  +          +  ++   +VT+  R ER               +  FV 
Sbjct: 351 FSLIERASGFI----------SGLVIVLHDVTEQQRTERE--------------RRQFVS 386

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+ELR+PLT++  + D L+   +         +++     +T +++++ND+L+L+ +D
Sbjct: 387 NVSHELRTPLTSVKSYVDALQDGAVED-PEVAHNFLQVAQDETTRMIHMINDLLELSRMD 445

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMH-----ENNIRIKVISDGKLGSFVADRQRLLQ 689
           +G MKL    I +  L N +       +      E    IK +          D  +  Q
Sbjct: 446 SGTMKLEKEYINIAALFNYILDRFDMIIANDDKPEKYYTIKRMIPQLQIWVEIDTSKFTQ 505

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           +   I++NA+ +S  G  +  +    + + + S+ + G  IP+   K +F+RF  V  A 
Sbjct: 506 VIDNIMNNAIKYSPDGGVITARLEDRDSEVVLSITDQGLGIPKSNMKQIFDRFFRVDKAR 565

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              + G GLGL+I +  I    G V + S++   +T +  +P +
Sbjct: 566 SRAQGGTGLGLAISKEIIERFNGRVWVESTEGEGSTFSIALPYE 609



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 57/176 (32%), Gaps = 18/176 (10%)

Query: 264 ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND------QLTHTYEILHNLTV 317
              + +  G+     +VR  +  G+    ++V  E           +      +L ++T 
Sbjct: 218 ARTAKIAQGDYSGGIVVRTNDEIGKLAQDVNVLAERIEETTNSMDFERRRLDSVLEHMTD 277

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            +   D+   +   N + + +  +         +   +L+ LR A       +  + ++ 
Sbjct: 278 GVIATDRRGNINIINIAALRMTGLSEN---QKANGRSILDILRIA-------DQYSLRDL 327

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNT 431
           + + ++         H    +    ++        G + +  ++T Q   E +   
Sbjct: 328 LDNRHELLLDFSTDEHPLMIRAYFSLIERASGFISGLVIVLHDVTEQQRTERERRQ 383


>gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
 gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
          Length = 1271

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/512 (19%), Positives = 195/512 (38%), Gaps = 44/512 (8%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            +   + +          +    + +   +  +   N SF  +   D + L          
Sbjct: 544  RTAQLKESEVRFRTAFESTVHGMLLIALSGEILQLNNSFAAMLGYDESELVGETVYS--- 600

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVT-------- 405
                    +  Q + K   E + S+    + H D    +   +G  +             
Sbjct: 601  --------ITYQDDIKLTTEAMRSIVSGEQNHYDITKRYVRKDGNLVIATANAALIRDNK 652

Query: 406  SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            SNP    +    N+T       + + + ++  + I     G+A    DG I   N AF  
Sbjct: 653  SNPI-YIVANVVNITEAEHTRKERDKIFELSRDII-----GIA--DLDGNIHYLNSAFGE 704

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            L       +        +  +                 +  F+       G+++ +S S 
Sbjct: 705  LLSYSTADVINSNFRDILRPSDIEQLEIVFQSLQELDSLVDFESMHTLPDGSIKWISWSF 764

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                +    N +      + TD    E  L ++ +   +A   K+ F+ ++S+E+R+PL 
Sbjct: 765  TADRV----NNRIYSIGRDATDRKVYENTLKDQKDKAEQAGRAKSEFMANISHEIRTPLN 820

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             +IGF++LL        +SK + Y+  I  S   LL L+NDILD++ ++A   +   +  
Sbjct: 821  AVIGFSELLSARAQ---DSKAASYINSIKTSGKALLTLINDILDISKLEAAATEPVLAPA 877

Query: 646  VLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             +  LL E+ +    +    +I++   I+     + + D  RL Q+   ++ NA+ F+ +
Sbjct: 878  SIKMLLEEMVRIFGYRTEHTDIKLGYFIAADTPKTMMLDISRLRQVLLNLIGNAVKFTER 937

Query: 705  GST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
            G   + ++    N    D   SVK+ G  IP++  + +F  F      +  +  G GLGL
Sbjct: 938  GEVSISVRCEAVNDERVDLYISVKDTGIGIPKEEMEDIFQAFRQRAGHNINKYGGTGLGL 997

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            SI    +++ GG + + S     +T    +P+
Sbjct: 998  SISSKLVDMMGGEIRVESKVGIGSTFTVILPA 1029



 Score = 58.0 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 93/276 (33%), Gaps = 21/276 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++  +    +    E + +    I   D++    + N +   L+ +    L    +    
Sbjct: 110 AEMESALMDMQIYEEFVEDTDNIITRVDKDARFTYVNTACEGLYGVSRDVLIGQSA---- 165

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRGG 411
            +F    ++      + +W +N     ++S  ++    L +G  +HV+ T N      G 
Sbjct: 166 FDFTHVDDREITINAFNSWIKNKLK--RTSFVNRQI--LSDGSVIHVLWTINLHYGSSGE 221

Query: 412 TIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            +++    +++T     E             +D   + V +   DG I   N  F    +
Sbjct: 222 LLYINSIAKDITDGYLAEAALKKSESSLRAILDSSQDIVLLLDSDGTILDCNQQFCKEVE 281

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   +  G ++ NI           +   +F  ++ +    R    G     S  +   
Sbjct: 282 IDIASVL-GCNLWNIRGMN----TNGERRVIFDNVVRTGKPCRFEDYGADNWYSVYIAPI 336

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           ++  +   + +    N+T    AE+     NE   K
Sbjct: 337 ALEDMEQKRFVAFAKNITYRKEAEQ-FARMNEHRHK 371


>gi|258591510|emb|CBE67811.1| putative Sensor protein [NC10 bacterium 'Dutch sediment']
          Length = 1049

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 122/244 (50%), Gaps = 13/244 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ +       A   K  F+  +S+E+R+PL  IIG T+L   +   +L ++Q ++++ +
Sbjct: 505 AMQQAKSVAEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDT---ALTTEQREFLQVV 561

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +SS  LL ++NDILDL+ ++AG M +  +   L +++  V + ++ +  +  + +    
Sbjct: 562 QSSSEALLTVINDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYV 621

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNN 726
           D  L S  + D  RL Q+   ++ NA+ F+ +G  V ++  R   +         SV + 
Sbjct: 622 DPALPSRVLGDPMRLRQVLVNLVGNAIKFTERGE-VTIQVERTQVEAPGRIGVHISVADT 680

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP      +F+ F        RR  G GLGLSI ++ + L GG + + S     +T 
Sbjct: 681 GIGIPTHQQARIFDPFAQADATTARRFGGSGLGLSISKALMELMGGRIWVESEVGKGSTF 740

Query: 785 NCRI 788
           +C +
Sbjct: 741 HCDL 744



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 88/272 (32%), Gaps = 28/272 (10%)

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
           RV++  G    +++      + +       ++ +   A+ + D+   +   N     L+ 
Sbjct: 34  RVVDELGRLAGSLN-EMLNALAESEAKFRGLVKDAPDAMVLVDKAGRIVLANDEAERLFG 92

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQT 399
                L   P    + E LRS +      +  T+      V +      + +    +G+ 
Sbjct: 93  YTQQELHGAPLEMLVPERLRSRH----AADRATY--LTHPVTRPMGVGLELYGVRKDGRE 146

Query: 400 LHVIVT----SNPRGGTIWM-FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
             V +         GG +     ++T +   E + +    +Q   ++  + G+ +   +G
Sbjct: 147 FPVDIKLSHYPAKDGGIVMAAIRDITARKQAEVQLH----LQTTALEAAANGIVITDREG 202

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            I  +NPA   L       L        I        ++      F  +  +    +   
Sbjct: 203 TIVWTNPAATPLTGYTAQEL--------IGQNLRLLKSDQHDTAFFKTLWETILTGQIWH 254

Query: 515 QGTLELLSDSVL---EYSIIPLPNAQTMLTFV 543
              +    D  L   E +I P+ + +  +T  
Sbjct: 255 GEMINRRKDGSLYTEEQTIAPVRDDRGQITHF 286



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 17/192 (8%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             +D +             L+   + F+ L       +   D+AG I+ AN   ++    
Sbjct: 34  RVVDELGRLAGSLNEMLNALAESEAKFRGLVKDAPDAMVLVDKAGRIVLANDEAERLF-- 91

Query: 229 EGIVFQKAIGESRKLF-KEEIKKRMISSSALEKNFCETVSTLEH-------GNNKSYKI- 279
            G   Q+  G   ++   E ++ R  +  A       T              + + + + 
Sbjct: 92  -GYTQQELHGAPLEMLVPERLRSRHAADRATYLTHPVTRPMGVGLELYGVRKDGREFPVD 150

Query: 280 ---VRVLNSFGEAGIA--IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
                     G   +A   D++       QL      L      I I D+   + + N +
Sbjct: 151 IKLSHYPAKDGGIVMAAIRDITARKQAEVQLHLQTTALEAAANGIVITDREGTIVWTNPA 210

Query: 335 FVELWEIDLAFL 346
              L       L
Sbjct: 211 ATPLTGYTAQEL 222


>gi|150007794|ref|YP_001302537.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298376836|ref|ZP_06986791.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|149936218|gb|ABR42915.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298266714|gb|EFI08372.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 632

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 129/641 (20%), Positives = 261/641 (40%), Gaps = 65/641 (10%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK---------- 235
           + +   +   K+L D  +  +W  D      +   SY  +     I  +K          
Sbjct: 2   EDIQTQLDQCKLLLDRAEVGLWEAD------FVQRSYICSDYLMSIFGKKGNNLSFFEFY 55

Query: 236 -AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
             I E  +         + S    E+ F     T E       ++     + G    A+ 
Sbjct: 56  YIIREDFRDLITTDFLSIQSVDTYEQIFPIITPTGEKWVRS--RLCERKLNNGVCVKALG 113

Query: 295 VS--------KEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           +         KE  ++  + H   I      NL V + ++D++ YL       ++L   D
Sbjct: 114 ILQILPNFKLKEEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYL-------IDLNAKD 166

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK---DTWHLPNGQT 399
           +         D L   + S   LP+ +  K  KEN    ++ + + K   D ++      
Sbjct: 167 MEIFGIRSKKDVLGVNIFSNPILPKDV-IKKLKENKSVNFRLNYSFKKVDDYYNTSKVGE 225

Query: 400 LHVIVTSN---PRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           L ++  ++    + G     + +  + T ++    + +    V      +   G A++  
Sbjct: 226 LDIVTKASILYDQRGEPSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDL 285

Query: 453 ---DGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              +G  IK     + ++ + +   LS    I +        Y  S   ++       F 
Sbjct: 286 YTFEGYAIKQW---YENMGEKDGTPLSQIIGIYSYIHPNDAGYINSFFEEVKQGKAHHFR 342

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            E +   G       + +  +   +   +  +  +N   +   +  L    E   + D +
Sbjct: 343 REVRVKSGDGWKWICANITRNPQSVDPNKPEMICINYDITELKDSQLK--RERAEELDRL 400

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++ +LL L++DIL
Sbjct: 401 KSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNNRMLLQLISDIL 457

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +++G M   ++ + + +++NE+  S   KM + N+ +    D       +DR RL 
Sbjct: 458 DLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPD-NVALIAPKDSPECQIYSDRMRLT 516

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ S  L+NA+ ++S+G  +IL       +  FSV + G  + +++   +F+RF      
Sbjct: 517 QVISNFLNNAIKYTSEG-CIILAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTF 575

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++G GLGLSI E+ +N  GG + ++S     +T     P
Sbjct: 576 --KQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|148559609|ref|YP_001259471.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|223635610|sp|A5VRX4|PDHS_BRUO2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|148370866|gb|ABQ60845.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
          Length = 1035

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGRQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|255013497|ref|ZP_05285623.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 632

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 128/639 (20%), Positives = 260/639 (40%), Gaps = 65/639 (10%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK---------- 235
           + +   +   K+L D  +  +W  D      +   SY  +     I  +K          
Sbjct: 2   EDIQTQLDQCKLLLDRAEVGLWEAD------FVQRSYICSDYLMSIFGKKGNNLSFFEFY 55

Query: 236 -AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
             I E  +         + S    E+ F     T E       ++     + G    A+ 
Sbjct: 56  YIIREDFRDLITTDFLSIQSVDTNEQIFPIITPTGEKWVRS--RLCERKLNNGVCVKALG 113

Query: 295 VS--------KEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           +         KE  ++  + H   I      NL V + ++D++ YL       ++L   D
Sbjct: 114 ILQILPNFKLKEEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYL-------IDLNAKD 166

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK---DTWHLPNGQT 399
           +         D L   + S   LP+ +  K  KEN    ++ + + K   D ++      
Sbjct: 167 MEIFGIRSKKDVLGVNIFSNPILPKDV-IKKLKENKSVNFRLNYSFKKVDDYYNTSKVGE 225

Query: 400 LHVIVTSN---PRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           L ++  ++    + G     + +  + T ++    + +    V      +   G A++  
Sbjct: 226 LDIVTKASILYDQRGEPSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDL 285

Query: 453 ---DGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              +G  IK     + ++ + +   LS    I +        Y  S   ++       F 
Sbjct: 286 YTFEGYAIKQW---YENMGEKDGTPLSQIIGIYSYIHPNDAGYINSFFEEVKQGKAHHFR 342

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            E +   G       + +  +   +   +  +  +N   +   +  L    E   + D +
Sbjct: 343 REVRVKSGDGWKWICANITRNPQSVDPNKPEMICINYDITELKDSQLK--RERAEELDRL 400

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++ +LL L++DIL
Sbjct: 401 KSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNNRMLLQLISDIL 457

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +++G M   ++ + + +++NE+  S   KM + N+ +    D       +DR RL 
Sbjct: 458 DLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPD-NVALIAPKDSPECQIYSDRMRLT 516

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ S  L+NA+ ++S+G  +IL       +  FSV + G  + +++   +F+RF      
Sbjct: 517 QVISNFLNNAIKYTSEG-CIILAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTF 575

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             ++G GLGLSI E+ +N  GG + ++S     +T    
Sbjct: 576 --KQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612


>gi|309809785|ref|ZP_07703639.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169964|gb|EFO72003.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 612

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 175/416 (42%), Gaps = 30/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWMFENL-TVQVDLETKY-NTLVKVQGETID 441
            E       + NG  + HV V +N   G +    N+ +V+++   +  ++  +     + 
Sbjct: 208 EEMKDQALRISNGDYSGHVKVYANDEMGELARAFNILSVRIERSQEVSDSERRRLDNVLM 267

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N    +     EN +  G  I  +         E    DL +
Sbjct: 268 HMTDGVIATDRHGNITIINETALNFLDKTENEVK-GEPITQLLG-----LKEVTIQDLMS 321

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                      +    L L +D  L   +    +    +              L +  E 
Sbjct: 322 TQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICV--------------LHDITEQ 367

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            +  +E +  FV +VS+ELR+PLT++  + + L      + N    Q++  I   +  ++
Sbjct: 368 QKNENEQR-QFVSNVSHELRTPLTSLRAYVEALNDGAWKNENI-APQFLGVIQNETERMI 425

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI---RIKVISDGKLG 678
            ++ND+L+L+ +D G++K++   + LND L+ +       +  + +   +I+ I   +  
Sbjct: 426 RMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQAL 485

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  +++Q+   I++NA+ +S  G  + ++  + +   I S+ + G  IP      +
Sbjct: 486 WVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRKDLSRI 545

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF         ++ G GLGL+I +  +  H G +   SS+   +T    IP ++
Sbjct: 546 FDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIPYEK 601


>gi|57238945|ref|YP_180081.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
 gi|58578878|ref|YP_197090.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
 gi|57161024|emb|CAH57930.1| putative histidine kinase sensor component of a two-component
           regulatory system [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417504|emb|CAI26708.1| Putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
          Length = 477

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/416 (21%), Positives = 176/416 (42%), Gaps = 33/416 (7%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VAVFGPDGRIKLS 459
            ++  +    GT   + +L +++  E           + +D + +  V ++  DG +  S
Sbjct: 64  QLLAKAPSHVGTNAYYMDLLIRLRAE---------FLKALDGVEDFHVILYNVDGNVIFS 114

Query: 460 NPAFRSLWKTE-------ENRLSPGTHIRNIAATCS---------RYYNESDGWDLFAAI 503
           N +   + + +        N L  G +I +   + +            ++S    +F  I
Sbjct: 115 NKSSDEISEQDLLLRSSDMNSLLRGEYIDHKVKSSANVVSIFPIFPLGDKSHHPLMFLKI 174

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEA 561
           I + ++    +     +    V+   II +     +        S +      L E  E 
Sbjct: 175 IKNSENLSSFIVDFYTIFLVIVVLIIIIFVVVTWCIYYRNTRMLSKQYDVNLKLKEAKEM 234

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTIL 620
             + +  K+ F+ +VS+ELR+PL +IIGF++++K+  LG + NS   +Y+  I +S   L
Sbjct: 235 AEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPIENSDYKEYINDIHSSGVHL 294

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L+L+NDILD +  +A  + + +    L  +++     +  +  +  + ++ +        
Sbjct: 295 LSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPRAEQAKVHLEKVLPSDKVVM 354

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSV 738
           VAD +R+ Q+   +LSN++ F+ +  TV L      ++   I  + + G  I +     V
Sbjct: 355 VADPKRIKQVIINLLSNSIKFTPENGTVKLVVRYNLEDKLIIIEITDTGIGIAQQDLYKV 414

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + F  V + H  +  G GLGL + +  + L  G   I S     T I    P  E
Sbjct: 415 MSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSEPNSGTVITLTFPYTE 470


>gi|315658045|ref|ZP_07910918.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus lugdunensis M23590]
 gi|315496935|gb|EFU85257.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus lugdunensis M23590]
          Length = 569

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 161/377 (42%), Gaps = 36/377 (9%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +L  +   L   Q         T++++   V +    G I ++N ++  ++  EE     
Sbjct: 208 ELARRLQKLNNKQKIQSNRLKTTLENIPSSVLMIDKYGEIVVANHSYYEVFGLEEK---- 263

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
                      ++ YN+     +   I+ +F  E+     ++  +  +     + S +P+
Sbjct: 264 ---------VENKDYNDFIDDKIKQLILEAFKTEKSMYNQVEVNINNVHHKYFDVSCVPI 314

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +         V         +      L+K + ++  FV +VS+EL++P+T+I GF + 
Sbjct: 315 LSKSKKHLQGMVV--------VLHDITNLKKLENLRREFVANVSHELKTPITSIKGFAET 366

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L       + +    ++  I   S  + +LV D+LDL+ ++    +L  + + L++L + 
Sbjct: 367 LIEGAKDDV-ASLDMFLNIILKESNRIESLVMDLLDLSHIEQQR-ELETAYVNLSELAHN 424

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++  +  + NI I       +  F A++ ++ Q+ + +LSNA+++S + + VI++  
Sbjct: 425 TVDNLQNQAKDKNIEIIDEISPDII-FKANKNKIAQVITNLLSNAINYSLENNRVIVRVY 483

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
           R        +++ G  I ++  K +F RF            G GLGLSI +  +  H G 
Sbjct: 484 RQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHHGV 543

Query: 772 VSISSSDEGVTTINCRI 788
           +S+ S     +T     
Sbjct: 544 ISVKSEPNKGSTFKVTF 560


>gi|289550551|ref|YP_003471455.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180083|gb|ADC87328.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis
           HKU09-01]
          Length = 543

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 161/377 (42%), Gaps = 36/377 (9%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +L  +   L   Q         T++++   V +    G I ++N ++  ++  EE     
Sbjct: 182 ELARRLQKLNNKQKIQSNRLKTTLENIPSSVLMIDKYGEIVVANHSYYEVFGLEEK---- 237

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
                      ++ YN+     +   I+ +F  E+     ++  +  +     + S +P+
Sbjct: 238 ---------VENKDYNDFIDDKIKQLILEAFKTEKSMYNQVEVNINNVHHKYFDVSCVPI 288

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +         V         +      L+K + ++  FV +VS+EL++P+T+I GF + 
Sbjct: 289 LSKSKKHLQGMVV--------VLHDITNLKKLENLRREFVANVSHELKTPITSIKGFAET 340

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L       + +    ++  I   S  + +LV D+LDL+ ++    +L  + + L++L + 
Sbjct: 341 LIEGAKDDV-ASLDMFLNIILKESNRIESLVMDLLDLSHIEQQR-ELETAYVNLSELAHN 398

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++  +  + NI I       +  F A++ ++ Q+ + +LSNA+++S + + VI++  
Sbjct: 399 TVDNLQNQAKDKNIEIIDEISPDII-FKANKNKIAQVITNLLSNAINYSLENNRVIVRVY 457

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
           R        +++ G  I ++  K +F RF            G GLGLSI +  +  H G 
Sbjct: 458 RQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHHGV 517

Query: 772 VSISSSDEGVTTINCRI 788
           +S+ S     +T     
Sbjct: 518 ISVKSEPNKGSTFKVTF 534


>gi|254490059|ref|ZP_05103252.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010]
 gi|224464723|gb|EEF80979.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010]
          Length = 896

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 162/379 (42%), Gaps = 7/379 (1%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E L  +  LE             +D+  + V      G I+  N A   L+  + + +  
Sbjct: 367 EELRERKALEATARHESLRLQTLLDNTIDSVITINQSGIIENYNKASVQLFGYQPDEV-I 425

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G +I  +     R  ++       +   T    +   ++   +  +   +E ++      
Sbjct: 426 GKNITMLMPASYRDQHKLGMARFLSTEETRIIGKPVEVEALHKSGNTFPIELTLSDFKWE 485

Query: 537 QTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           Q  L      D  +    + AL +      +A+  K+ F+  +S+ELR+PL  I+GF+ L
Sbjct: 486 QKYLFTGIARDISQQKAEQEALLKAKYEAERANNAKSEFLSSMSHELRTPLNGILGFSQL 545

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           + +    +LN KQ   +  I  S   LL+L+ND+L+L+ +D+G +K +   + +  +  E
Sbjct: 546 ILSDTEHTLNEKQRHNINQIIHSGKHLLSLINDVLELSEIDSGRIKTSDDHVPIASVFEE 605

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +  +     + NI I    DG     +AD  +L Q+F  ++SNA+ ++  G  V++ A+
Sbjct: 606 CQPLLQALAKQQNINIDFQ-DGTDAVVLADFTKLKQVFITLVSNAIKYNKTGGEVLVSAS 664

Query: 714 RD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
               N     ++ + G  I +D    VF  F          G G+GLS+ +  I   GG 
Sbjct: 665 VQTHNNSLKLTITDTGKGISKDRQAQVFTAFERLGQERHVEGAGIGLSVSKRLIEAMGGQ 724

Query: 772 VSISSSDEGVTTINCRIPS 790
           +  +S++   T+    +P 
Sbjct: 725 IDFASTEGQGTSFWIELPL 743


>gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 503

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 165/379 (43%), Gaps = 24/379 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENR 473
           + + +  +  +        +   +        +A+    +GR    N +F  +   +   
Sbjct: 139 LQQEIQEREQVLQALRQAEEKFVKAFRSSPNPIAITTLAEGRFIDVNASFLRITGFQLEE 198

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +   T     A      Y  +        ++ + + E ++  G +     S+    +  +
Sbjct: 199 VIGHTVAELNAGLDLAAYTSAIATLQTTGVVHNHEFEFRTKTGQIGTALLSIERIELAGV 258

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P A  +    ++T+  + E                 N F+  VS+ELR+PLT+++G  DL
Sbjct: 259 PCA--LNIANDITERKQLE-----------------NEFISLVSHELRTPLTSLMGALDL 299

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L T +LG+L  K    +   + ++  L+ L+NDILDL  + AG + +        +L+ +
Sbjct: 300 LGTGQLGNLTPKGQHVLRIATTNTERLIRLINDILDLERIKAGKITMQKVRCDAAELITQ 359

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +++    H+ N+++ V  +    + +AD  R+LQ  + +LSNA+ FS     V L+  
Sbjct: 360 AAEALQEMAHQANLQLVV--EPIAVALIADPDRILQTLTNLLSNAIKFSEPQGRVWLRGQ 417

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            +       V++ G  IP D  +++F RF  V  +   ++ G GLGLSI  S +NLHGG 
Sbjct: 418 VEGEILHLQVQDQGRGIPADKLQTIFERFQQVDASDSRKKGGTGLGLSICRSIVNLHGGK 477

Query: 772 VSISSSDEGVTTINCRIPS 790
           +   S     +T +  +P 
Sbjct: 478 IWAESVLGEGSTFHIHLPL 496


>gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 686

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 157/400 (39%), Gaps = 19/400 (4%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           G  L +I+ S  R   +    ++   +     +     +     ++  ++ V      GR
Sbjct: 14  GAMLALILVSLRRREPVVPDSDIAEALQDRLWQIAESEERYRVLVEATTQAVVQRDGQGR 73

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           I  ++  F +L             +  I +T +    E    +     +   ++    + 
Sbjct: 74  ITFASEGFAALLGV--------KPLELIGSTLTPQVIERGASEQRPDGVRVVEERLVPVD 125

Query: 516 GTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           G     S   +E       +    +    +VT  V A R+L E       A+  K+ F+ 
Sbjct: 126 GVPRWFS--FIEMPAAGHTDGPSWLRAGQDVTGRVEAARSLDEAKSRAEAANVAKSRFLA 183

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            VS+ELR+PL  I+G  DLL  +    LN +Q  YVE    S   LL LV+ ILD + ++
Sbjct: 184 TVSHELRTPLNGILGMADLLLDT---PLNPEQRTYVEAFRTSGKALLGLVDGILDFSRIE 240

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSK 693
           AG + L      +  L+  V + +A +  +  + I +     L +  V D  R+ QI   
Sbjct: 241 AGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLTALRVGDADRVRQILVN 300

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           +  NA+ F+  G   V L  A +     F+ ++++ G  IPE+    +F  F        
Sbjct: 301 LAGNAIKFTQAGGVGVSLARAGEGQREGFVLTIEDTGPGIPEERIPILFEEFEQGEDSAS 360

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGL+I    +    G +   S+    +     +P 
Sbjct: 361 HEGTGLGLAITRRLVERMNGTIEARSTVGRGSIFRVVLPL 400



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 11/163 (6%)

Query: 166 LRILSLDGIYSELAE-TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LR        S++AE    +  +++     ++VL ++    V  RD  G I +A+  +  
Sbjct: 24  LRRREPVVPDSDIAEALQDRLWQIAESEERYRVLVEATTQAVVQRDGQGRITFASEGFAA 83

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
               + +           L  + I++             E       G  + +  + +  
Sbjct: 84  LLGVKPLEL-----IGSTLTPQVIERGASEQRPDGVRVVEERLVPVDGVPRWFSFIEMPA 138

Query: 285 SFGEAGIA-----IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           +    G +      DV+  +     L           VA + F
Sbjct: 139 AGHTDGPSWLRAGQDVTGRVEAARSLDEAKSRAEAANVAKSRF 181


>gi|294501967|ref|YP_003565667.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM
           B1551]
 gi|294351904|gb|ADE72233.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM
           B1551]
          Length = 635

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 151/387 (39%), Gaps = 30/387 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-PAFRSLW 467
           G     F NLT ++ + +       +     + H+++GV      GR+ L N PA   L 
Sbjct: 266 GQLALTFNNLTRKLQEAQATTEGERRKLSSVLAHMTDGVIATDRKGRVILINDPAAAMLN 325

Query: 468 KTEENRLSPGT-HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            + E  LS     + ++  T +     ++   L     T  D                +L
Sbjct: 326 VSRETVLSDPVVSLLDLEETHTFESLLANQESLILDFSTKSDP--------------FIL 371

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
             +I  +      +  + +      E+          K D+ +  FV +VS+ELR+PLT 
Sbjct: 372 RATISAIQKETGFINGIIIVLHDITEQE---------KIDQDRREFVANVSHELRTPLTT 422

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +  + D L        +     ++      +  ++ LVND+L L+ +D+   + +   I 
Sbjct: 423 MRSYLDALAEGAWQDKD-LAPTFLNVTQTETERMIRLVNDLLQLSKLDSQDYRFSRDPIN 481

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
                + +       + +  I        +      D+ ++ Q+   I+SNA+ +S +G 
Sbjct: 482 FVKFYHYIIDRFEMTIEQ-GISFVRDLPNEAIYVAIDQDKITQVLDNIISNAIKYSPEGG 540

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           T+    A+   + + S+K+ G  IP+     +F RF        R   G GLGL+I +  
Sbjct: 541 TITFSIAQHTHEIVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKLGGTGLGLAIAKEI 600

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G +   S +   TTI   +P +
Sbjct: 601 IEAHDGRIWADSQEGKGTTIYFTLPIE 627


>gi|323488189|ref|ZP_08093440.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
 gi|323398193|gb|EGA90988.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
          Length = 953

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 167/383 (43%), Gaps = 23/383 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I +  +     +      TL +     I++++EG+     +G +   N    ++     
Sbjct: 436 RIHLAIDRIQLYEAAVHERTLNER---IINNINEGIQFISKNGDMVQHNATMCTMLNCGN 492

Query: 472 NRLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
             L         +     +       +   +  I   D E  + + T+++  + V++   
Sbjct: 493 GPLDASIPKGIWVKRMAEQTTAPELMYKFLSNCIQIKDKEANTFRYTVKVPYERVIDVYS 552

Query: 531 IP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            P + + +   T     D  R             + D++K+  V  VS+ELR+PL++++G
Sbjct: 553 TPVIVDGEKTGTIFVHRDITR-----------EHEVDKMKSELVSTVSHELRTPLSSVLG 601

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           FT+LL   +L     KQ +Y++ I   +  L NL+ND LDL  +++G        + +N+
Sbjct: 602 FTELLLNKQLKP--EKQERYLKTIYKEAKRLTNLINDFLDLQRMESGDQVYRMDKLAVNE 659

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ E  +   T+   N   I  I D        DR+R+ Q+   ++ NA+ FS +G +V 
Sbjct: 660 LIIETVEKFRTQ---NMHSIVFIDDASDVIVEGDRERIAQVLMNLVGNAIKFSPQGGSVT 716

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           +    D  +   ++K+ G  IP +    +F++F    +  +R   G GLGL+I +  I  
Sbjct: 717 ISMKNDLNNLSVTIKDEGIGIPTEDIPKLFSKFQRIDNSSRRKIGGTGLGLAICQEIILQ 776

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           H G + I S +E  T ++  +P 
Sbjct: 777 HEGKIWIESKEEQGTAVHFELPL 799



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 6/150 (4%)

Query: 289 AGIAID-VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             +AID +        + T    I++N+   I    +N  +  HN +   +       L 
Sbjct: 437 IHLAIDRIQLYEAAVHERTLNERIINNINEGIQFISKNGDMVQHNATMCTMLNCGNGPLD 496

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
            +      ++ +      PE + +K     I    K + T + T  +P  + + V  T  
Sbjct: 497 ASIPKGIWVKRMAEQTTAPELM-YKFLSNCIQIKDKEANTFRYTVKVPYERVIDVYSTPV 555

Query: 408 ----PRGGTIWMFENLTVQVDLETKYNTLV 433
                + GTI++  ++T + +++   + LV
Sbjct: 556 IVDGEKTGTIFVHRDITREHEVDKMKSELV 585


>gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 930

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 127/661 (19%), Positives = 232/661 (35%), Gaps = 85/661 (12%)

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSA--- 257
              ++   D  G +L  N  + +N    G   +  +G      F E  K   + + A   
Sbjct: 23  APVMLHSVDATGCLLAVNDRWLENL---GYAREDVLGRFLGDFFTEASKVEYMRNLACFV 79

Query: 258 LEKNFCETVSTLEHGNNKSYKI--VRVLNSFGEAGIAI------DVSKEITVNDQLTHTY 309
            E    E   T+   + +   I    V    G            D++        L  + 
Sbjct: 80  REGRISELPYTMLSKDGRPIDILLSSVGEYDGHGRFVRSLAAIEDITMRRQAEQALAASE 139

Query: 310 EIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT-------NPSNDELLEF 358
           E+      +    + I          N +  E        LAT       +P +      
Sbjct: 140 ELFRMAFESANEGLCILSPEGRFLRANEALCEFLGYPAEELATMTAFELTHPDDRVSSAR 199

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           L +     E  +++  K    +  +        W   + + +      +PR   I    +
Sbjct: 200 LVARAVSGEVEHFRFEKRYFHASGR------VIWGRVSARLVR-DAAGSPR-YIISHILD 251

Query: 419 LTVQVD-----------LETKYNTLVKVQGETID-----HLSEGVAVFG-PDGRIKLSNP 461
           +T               LE     L +++   +       LS+ VA+ G  DG I L  P
Sbjct: 252 VTESRRNAGKIALHTKTLEVLLR-LGRMREAGLSQLGTYALSQAVALTGSADGLIALFEP 310

Query: 462 A---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--------E 510
           A   FR L        + G      +    R    S  W     +I++            
Sbjct: 311 ARETFRLLAAHPGALSAFGMPPGAQSFDARRIEPFSTAWLSQQPVISNTPPTVPEAQSLP 370

Query: 511 RKSLQGTLELLSDSVLEYSII----PLPNAQTMLTFV------NVTDSVRAERALTEKNE 560
            +SL   +E   ++ L   +I    P  +A      +              ER L    +
Sbjct: 371 WRSLVVPVEGEGENRLLIVVIDKDEPYDDADVHRLILLGEGVLGHVKDRARERDLERARK 430

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               A   K+ F+ ++S+E+R+PL+ IIG T +   +   +   +  +++E I  SS  L
Sbjct: 431 QAEAASRAKSGFLANMSHEIRTPLSGIIGLTQM---TLSQTPRPEVREHLELILDSSRSL 487

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L +VNDILD + ++AG M+ +     L ++L+   +       +  +R+ +    +L   
Sbjct: 488 LAIVNDILDFSKIEAGKMEFSPVDFDLREILDRTMKPFHFSSRQKGLRLSLRIAQELPDI 547

Query: 681 -VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF--SVKNNGSSIPEDMCK 736
              D  R++Q+   ++ NA+ F+ KG   V  +  R     +   SV++ G  IPE+   
Sbjct: 548 LHGDPDRIMQVVRNLVGNALKFTDKGEVAVEFRLLRPGDPMLVECSVRDTGIGIPEERLP 607

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI---PSK 791
            +F  F            G GLGL+I    + + GG + + S     +  +  +   P++
Sbjct: 608 ELFQVFSQLESSRTKRYGGTGLGLAISRRLVEMMGGTIGVRSRPGQGSVFSFTVSLRPAQ 667

Query: 792 E 792
           E
Sbjct: 668 E 668


>gi|332712494|ref|ZP_08432420.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332348789|gb|EGJ28403.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1356

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 152/383 (39%), Gaps = 29/383 (7%)

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                T+    +      I  L++G+ V    G+I   NPA  SL+   E  L        
Sbjct: 754  KTTTTQLQHTIAYVDAMIRSLADGLLVTDTKGKITRINPALVSLFDLGETEL-------- 805

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                  +      G  +   +  +  + ++     +EL +  + +     +         
Sbjct: 806  ----LGQGCQGVLGNAIANLVTLTKTNPKQVFTAEVELTNQRIGKAVATAILKDTKATDN 861

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK------- 595
             +  D       L       ++ D +K  F+  VS+ELR+PLT+++GF  L++       
Sbjct: 862  PDSQDGFMGSVILIRDITFEKEVDRMKTDFISTVSHELRTPLTSVMGFAKLIQKKLEKTL 921

Query: 596  -------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
                     K+     + S+ V  I +    L  L+ND+LDLA ++AG ++     + + 
Sbjct: 922  FPLIPTNDHKIQRTLKQVSENVNIIISEGERLKALINDVLDLAKLEAGRVEWKMQPLSVV 981

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            D+L     +      +N++ +    D  L   + DR RL+Q+   ++SNA  F+ KG  V
Sbjct: 982  DVLERAIIATTALFEQNDVELIKSIDEGLPQIIGDRDRLIQVVINLISNAAKFTDKG-FV 1040

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
              K  R   +   S+ ++G  I E     +F +F    +    +  G GLGL I +  + 
Sbjct: 1041 YCKVRRTGSEITVSIIDSGIGISEAEQTLIFEKFKQAGNTLTEKPQGTGLGLPICKEIVE 1100

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
             H G + + S     +  +  +P
Sbjct: 1101 HHQGQIWVESELGKGSNFSFSLP 1123



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 46/132 (34%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    +   + +   ++ +L   + + D    +   N + V L+++    L        L
Sbjct: 755 TTTTQLQHTIAYVDAMIRSLADGLLVTDTKGKITRINPALVSLFDLGETELLGQGCQGVL 814

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              + +   L +    + +   +    +       T  L + +      + +   G++ +
Sbjct: 815 GNAIANLVTLTKTNPKQVFTAEVELTNQRIGKAVATAILKDTKATDNPDSQDGFMGSVIL 874

Query: 416 FENLTVQVDLET 427
             ++T + +++ 
Sbjct: 875 IRDITFEKEVDR 886


>gi|294140286|ref|YP_003556264.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293326755|dbj|BAJ01486.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1214

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 194/513 (37%), Gaps = 45/513 (8%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------PSND 353
            +         IL        I D    +   N +  +L+  D   L  +      PS++
Sbjct: 258 ELESANIRLSTILEAAVDGFIIIDTQGLIVQVNPAVGQLFGYDNNDLIGHNVSIFMPSHE 317

Query: 354 E------LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                  L+ F+ S   + +    +   ++        +       L +G  +       
Sbjct: 318 RHMQHDFLMRFINSKRGVLQGRGRELVAQHKNGKLFPIDLSVSKM-LIDGDIM------- 369

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                + + ++L+     E +      +   T++   + +      GRI+  N A   L+
Sbjct: 370 ----LLGLVKDLSDIKRKEAEAKRTESILLATLEASQDALITIDITGRIQEFNEAASHLF 425

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-- 525
                + + G  + ++           +G + F    T      K     + + +D    
Sbjct: 426 GHSREQ-ALGEILEDLIFVDIEKKAFKEGLETFRK--TGCGPAIKKSVELMSIRADGTNF 482

Query: 526 -LEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E  +IP+     +L      +V++ ++ E  L +  +      + K+ F+  +S+E+R
Sbjct: 483 PVEMKMIPVQLGDEILLTAFLHDVSERMQYETELKQAKKQAELGSKAKSRFLATMSHEIR 542

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           SPL  ++G  +L+  SK   LN  Q  Y      + T LL+ +NDILD + ++AG M L 
Sbjct: 543 SPLNAVLGGVELMLDSK---LNKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLE 599

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMD 700
             +     ++ +V Q +A K +E  + +    +  +   V  D QRL Q+   ++ NA+ 
Sbjct: 600 NMSFSPAKMVAQVMQILAPKANEKGVNLATFINRNVPELVKGDAQRLRQVLHNLVDNAIK 659

Query: 701 FSSKGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRG 753
           FS  G  V ++     +         +V + G  I     K +F  F      H    +G
Sbjct: 660 FS-SGGCVSVEMWIPDSHHQEVQLHCAVTDEGIGISLPAQKKLFKEFSQVHDQHNTNYKG 718

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            GLGL+I    I + GG + +SS     +    
Sbjct: 719 TGLGLAICSELIIMMGGEIELSSRLGHGSCFRF 751



 Score = 37.6 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 89/298 (29%), Gaps = 53/298 (17%)

Query: 177 ELAETTLKCKKLSNHISV-----------FKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           E+ +TT    ++   I +              + ++        D  G I+  N +  + 
Sbjct: 237 EIGQTTRAFNRMIEKIEMNTHELESANIRLSTILEAAVDGFIIIDTQGLIVQVNPAVGQL 296

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRM----------ISSSALEKNFCETVSTLEHGNNK 275
              +       IG +  +F    ++ M               L+    E V+  ++G   
Sbjct: 297 FGYDN---NDLIGHNVSIFMPSHERHMQHDFLMRFINSKRGVLQGRGRELVAQHKNGKLF 353

Query: 276 SYKIVR----VLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRY 327
              +      +       G+  D+S       +   T       L     A+   D    
Sbjct: 354 PIDLSVSKMLIDGDIMLLGLVKDLSDIKRKEAEAKRTESILLATLEASQDALITIDITGR 413

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS-- 385
           +Q  N +   L+         +     L E L     +   +  K +KE + +  K+   
Sbjct: 414 IQEFNEAASHLFG--------HSREQALGEILED--LIFVDIEKKAFKEGLETFRKTGCG 463

Query: 386 ----ETHKDTWHLPNGQTLHVIVTSNP--RGGTIWM---FENLTVQVDLETKYNTLVK 434
               ++ +      +G    V +   P   G  I +     +++ ++  ET+     K
Sbjct: 464 PAIKKSVELMSIRADGTNFPVEMKMIPVQLGDEILLTAFLHDVSERMQYETELKQAKK 521


>gi|302036587|ref|YP_003796909.1| histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604651|emb|CBK40983.1| Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 589

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 10/247 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    L    +A   A+  K+ F+  +S+E+R+P+  IIG  DLL  +   +L  +Q
Sbjct: 50  ELQRRVEELQRAKDAADVANRAKSEFLASMSHEIRTPMNAIIGMADLLWET---TLTPEQ 106

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+     +   LL+L+NDILDL+ V++G + L+     L++L+++  + +A + +E  
Sbjct: 107 RKYLRIFRRAGASLLSLINDILDLSKVESGRLDLDSIDFDLSELIDKTSEMLALRANEKG 166

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIF 721
           + +       +    + D  RL QI   +L NA+ F+ KGS V+        R  G   F
Sbjct: 167 LELVCHLANDVPCHLIGDPNRLYQILLNLLGNAIKFTEKGSVVMSITNDPELRTPGAIRF 226

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           S+ + G  +P D  K++F  F         Q  G GLGLSI +    L GG + + S   
Sbjct: 227 SISDTGIGVPHDKIKTIFETFTQAHSTIARQYGGTGLGLSISQQLAALMGGRIWVESRLG 286

Query: 780 GVTTINC 786
             +T +C
Sbjct: 287 EGSTFHC 293


>gi|194336761|ref|YP_002018555.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309238|gb|ACF43938.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 608

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 159/382 (41%), Gaps = 26/382 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G        +T ++    K     +        + E + V    G I + NPA   +++ 
Sbjct: 227 GVIARALNVMTDEI---RKLQHREEWLRAVFSGIREAIIVTDATGDITMVNPAASRMFRI 283

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             +   P             + ++S   +LFA + ++     K     +      +++ S
Sbjct: 284 NGSMFKPRPL---------SHLSDSKLQELFARVHSTRVTLHKEELSLMTTKGARIMQIS 334

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +PL   +     V V + +   R L          ++I+  FV  VS+ELR+PLT I G
Sbjct: 335 SMPLTKEELFTGTVFVLNDITKLRNL----------EKIRRDFVASVSHELRTPLTVITG 384

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +T+ L    +       + +++ I  ++  L  LVND+LDL+ +++G ++  +S + L  
Sbjct: 385 YTETLLDGAMHE-PEHATAFLQTILLATEQLTALVNDVLDLSRIESGQIEYTFSAVDLKR 443

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTV 708
           ++ +    +   + +  IR+ +     L +  AD + L  +   +L NA+ +   +   +
Sbjct: 444 MVQKSVDLLKPALDKKQIRLDIHIPDGLPTVYADPRYLDIVVRNLLDNAIKYVDDQNGKI 503

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            + A + +      +++NG  I +     +F RF         +R G GLGL+IV+  + 
Sbjct: 504 RITAFKSDDHLRLEIEDNGIGIAKSDLGRIFERFYRVDKARSRERGGTGLGLAIVKHIVM 563

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
            H G++ + S     +     +
Sbjct: 564 AHKGNIDVRSRVNLGSVFTLML 585



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 61/179 (34%), Gaps = 31/179 (17%)

Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV--SKEITVNDQLTHTYEILHNLTVAIA 320
            + +     G+   ++     +  G    A++V   +   +  +      +   +  AI 
Sbjct: 207 QKRIHGDISGSITLHR----KDETGVIARALNVMTDEIRKLQHREEWLRAVFSGIREAII 262

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + D    +   N +   ++ I+ +     P     L  L  +             + +F+
Sbjct: 263 VTDATGDITMVNPAASRMFRINGSMFKPRP-----LSHLSDSKL-----------QELFA 306

Query: 381 VYKSSE--THKDTWHLPNGQTLHVI-VTSNPR------GGTIWMFENLTVQVDLETKYN 430
              S+    HK+   L   +   ++ ++S P        GT+++  ++T   +LE    
Sbjct: 307 RVHSTRVTLHKEELSLMTTKGARIMQISSMPLTKEELFTGTVFVLNDITKLRNLEKIRR 365


>gi|218510751|ref|ZP_03508629.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Brasil 5]
          Length = 367

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/275 (34%), Positives = 155/275 (56%), Gaps = 4/275 (1%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
             ++  + L+RQR +L  +  E  S LS+   ++S+Y +L+ + N   ++WDG +  PE+
Sbjct: 97  AALLSTLWLVRQRGNLENESREIRSALSDAQQRISQYQALIADKNRRIVIWDG-NARPEL 155

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +GQL      PQ D + L+F  WLK      L KA ++LR   QSFD+V ET  D  ++ 
Sbjct: 156 LGQLPAETGAPQ-DGEFLAFGLWLKSRSASDLEKAIDRLRDGAQSFDMVVETIRDEILEA 214

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +GRVSG  AF+R ++L+ + +ELAE  ++  +L   IS F+ + D++D   W RD AG +
Sbjct: 215 QGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRL 274

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            W N +Y    E      Q+AI E R++     ++R+ +++  E  F +T+ST+ HGN  
Sbjct: 275 TWVNQAYGDAVEARS--PQEAINEGREMLTTVARERIRATTTPESPFHDTISTVVHGNRT 332

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
            + +V V    G AG+A+DVS    V  +L  T +
Sbjct: 333 FFDVVDVTLPGGSAGMAVDVSDIEAVRAELDRTLK 367


>gi|260223386|emb|CBA33901.1| hypothetical protein Csp_B21350 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 813

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/644 (17%), Positives = 235/644 (36%), Gaps = 62/644 (9%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKA 236
            A      + ++  ++  + + ++    +   D+ G +   N +       +E  +  + 
Sbjct: 202 QAAINQASRGMALQVNRVQAIVNTAAEAIIGLDEFGRVTTTNPAASSMFGRSEDELLGQT 261

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLE----HGNNKSYKIVRVLNSFG----- 287
           I        E+    M             V+  +      +   + +   L         
Sbjct: 262 IECCVPGLNEQALHEMFGQGMEHILSISRVTRHDFMGTRADGTLFPVEICLGEVKNDKTL 321

Query: 288 -EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD---QNRYLQFHNRSFVELWEIDL 343
             A I  D++ E    +        L +   A+ I +   +++ + + N +F +   +  
Sbjct: 322 RYACIVRDLTDERAAQETSELYERALASSHNAVFITNGKMEHQPIVYINDAFQKFVNLPR 381

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHV 402
             +       E L  LR  N      +    +E   +V +    +      L NG+    
Sbjct: 382 WDI-----LGESLALLRGKN-----ADDPGVRELTLAVREHRNANVTIHRELENGEVQIA 431

Query: 403 IVTSNP---RGGTIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            V+ +P     GT+  F     ++T +V  E                  +G  +F    +
Sbjct: 432 EVSLSPVMSDKGTLTHFVGIVSDITARVRAEEAMAERRAQLDAIFSLSPDGFVMFDAHDQ 491

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSL 514
           +  +NPAF  +          G H     +            D   A+ T   D    S 
Sbjct: 492 LVFANPAFERMTGL-------GKHASTPVSLSQFEQQLLSLCDESQALPTMRGDQPDASW 544

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFV 573
           +  L+L             P  + +       ++ R E  L  ++     + D +K+ F+
Sbjct: 545 EEKLQLAR-----------PQRRVVQARSRRNEAGRRETILYFRDVTHEDQVDRMKSEFL 593

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
              ++ELR+P+ +I GF++LL   K      +Q+  ++ I   S +L+ ++N++LDLA +
Sbjct: 594 TAAAHELRTPMVSIFGFSELLTRRKFTP--ERQTDMLQTIHRQSGLLVKMLNELLDLARI 651

Query: 634 DA-GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++ G + +  +   L++ +    + +  K  +  +   +         + D +++ Q  +
Sbjct: 652 ESRGGLDMQINAHPLDETVQYCIKGLMLKDTDRPV---LHDTLPSLQVLMDPEKMQQALT 708

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            +L+NA  +S +G  V L    +  +     +  V++ G  +  +  +  F RF      
Sbjct: 709 NLLANAFKYSPQGGDVSLSVRTEEDEGVRYAVIDVRDQGIGMTPEQLERAFERFYRADAS 768

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G   G GLGLS+V+    LH G  ++ S+    TT +  IP  E
Sbjct: 769 GNIPGTGLGLSLVKEIAELHKGRATMQSTFGEGTTASLWIPLAE 812


>gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
          Length = 1160

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 7/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R  R L  + E L K ++ ++ F+ ++S+ELR+PL +II  + +L   K+   + K 
Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKD 575

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I+ +   LL L+ND+LDL+ V++G M LN  T   ++L+ +++Q   +   E N
Sbjct: 576 MEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKN 635

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSV 723
           I    + D      V DR ++ QI    LSNA  F+S+GS + LKA  D     D IFSV
Sbjct: 636 ISF-FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVI-LKAEMDKDRENDLIFSV 693

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IPE+    +F  F         +  G GLGLSI +   +L  G + + S     
Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753

Query: 782 TTINCRIP 789
           +T   ++P
Sbjct: 754 STFFLKLP 761


>gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1138

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 129/248 (52%), Gaps = 3/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  +A + +T+K   + +A + K+ F+ ++S+ELR+PL +I+    LLK +K  +LN+ Q
Sbjct: 462 DLDKARKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQ 521

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y   I ++ + LL+L+N++LDLA +++G + L    I ++ L   ++        E +
Sbjct: 522 IKYATVIHSAGSDLLHLINELLDLAKIESGQIDLVEDHIDIHSLTRNIEGLFRISAEEKS 581

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I  K   D +   +F+ D  RL Q+   +LSNA  F+  G  + L     N +  F V++
Sbjct: 582 INFKTTIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELAYKHVNSNIHFIVQD 641

Query: 726 NGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I  +  K +F  F     +   +  G GLGLSI      L GG +S+ S  +  +T
Sbjct: 642 DGIGIAPEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGST 701

Query: 784 INCRIPSK 791
               +P +
Sbjct: 702 FTFILPYR 709


>gi|254423801|ref|ZP_05037519.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196191290|gb|EDX86254.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 427

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 124/257 (48%), Gaps = 13/257 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R ++ +  +N  L++   +K+ F+  +S+ELR+PL  IIGF+ +L   K G +N 
Sbjct: 154 NRELERKQQQIYRQNLQLQEVSRLKSEFLATMSHELRTPLNAIIGFSQILLGGKKGDINE 213

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q   +  + ++   LL L++DIL+L+ ++AG ++L    + L  L+ E  + + + +  
Sbjct: 214 TQRDMLGRVLSNGRHLLELISDILELSKIEAGRLELEPCKMDLVKLVEETVEELQSLITP 273

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---------- 714
             + +KV           D  R+ Q+   +LSNA+ F+  GS + +              
Sbjct: 274 KQLDLKVDITLNDPIITNDPTRVRQVLINLLSNAIKFTQHGS-ITVSIKSLTTKHSCMNG 332

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            + + + SV + G  I +     +F  F  +  R  R   G GLGL+I  S + +  G +
Sbjct: 333 GSEEILLSVSDTGCGISDVDQPYIFEAFHQSDQRTNRHHAGTGLGLAITYSLVKMMCGDI 392

Query: 773 SISSSDEGVTTINCRIP 789
           ++ S  +  +T   RIP
Sbjct: 393 TVESQVDKGSTFRVRIP 409


>gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 1101

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 168/394 (42%), Gaps = 28/394 (7%)

Query: 412 TIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGP--DGR-IKLSNPAFRS 465
                 ++T Q   +       +   +  + I+  + G+++      G  +   N  F  
Sbjct: 407 MAGSVTDITEQKRSQKALKQAKEQNDLLAQAIESCNVGISIADASVQGFPLVFLNSEFEK 466

Query: 466 LWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           +    +E  L     +     T      + +  D+    I +   +R  +    +  ++ 
Sbjct: 467 ITGYSKEEMLGINCSLLQGPNT------DKNAIDIITNAIKTLKTQRIEILNYKKDGTEF 520

Query: 525 VLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                I P+ N Q  LT       ++T+   A + L E   A  +A+  K+ F+  +S+E
Sbjct: 521 WNSLQISPVFNEQQQLTAYVGIQQDITEQKAANQLLIEAKAAAEQANIAKSEFLAAMSHE 580

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++G  +L+  S   SLN KQ   V     S+  LLN++NDILD + VDAG ++
Sbjct: 581 IRTPMNGVLGMLNLILDS---SLNEKQHHQVSIALNSANSLLNIINDILDFSKVDAGKLE 637

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNA 698
           L      L ++L++  ++IA   H  NI + +  +  +    + D  RL QI + +++NA
Sbjct: 638 LEELEFNLCNMLDDFIETIAIHAHSKNIPLMLDIEHLEYAFVIGDAGRLKQILTNLVNNA 697

Query: 699 MDFSSKGSTVILK--AARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           + F+ KG   ++      +N    F   V ++G  I       +F  F        R   
Sbjct: 698 LKFTHKGEVQVIAKLTPINNNQMRFNCQVIDSGIGISAAQQAKLFKSFSQVDSSTTRKYG 757

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G GLGL+IV+   +L  G + + S +   +  + 
Sbjct: 758 GTGLGLAIVKKLCHLMEGDIQVQSKENKGSNFSF 791


>gi|294852917|ref|ZP_06793590.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL
            07-0026]
 gi|294821506|gb|EFG38505.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL
            07-0026]
          Length = 1035

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/731 (16%), Positives = 261/731 (35%), Gaps = 57/731 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRI-PSK 791
            T +     P++
Sbjct: 1021 TVVEIVFSPTR 1031


>gi|289622415|emb|CBI51037.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 1333

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/663 (14%), Positives = 230/663 (34%), Gaps = 81/663 (12%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR----KLFKEEIKKRM 252
            L D     +    + G ++  N   ++    +        G +     K++ ++  +++
Sbjct: 308 ALLDKTQTPIIAMWKDGSVILPNKPARRLFNQDPAQGAPLEGSNLLEQWKVWNDDFSRQL 367

Query: 253 ISSSALEKNFCETVST---------LEHGNNKSYKIV-----RVLNSFGEAGI--AIDVS 296
            +         +T             + G    + +        +     AG+    D++
Sbjct: 368 ETDEHPISVLIKTEMPFETYRIGMLDQGGERLIFDVEGAVIRDEITGEFLAGVITCRDIT 427

Query: 297 KEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           +      Q+    +     I   +   +     +    F+N  +     +          
Sbjct: 428 RIEHEISQIKEADKERFRLICDTMPQLVWTTGPDGAHDFYNSRWYSYTGLTEEDSLGGGW 487

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNP- 408
                      + +  +  W+       S  ++ E +   +     +G+    +  + P 
Sbjct: 488 RKAF----HPDDLVETERRWQ-------SSLRTGEPYVIEYRCRSKDGEWRWFLGRALPL 536

Query: 409 ---RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
              + G I        ++   ++ + +     +     I H    +    PD ++ L   
Sbjct: 537 KNKQTGKIDKWFGTCTDVHETMEAKLEAKRTRQQLRSVIAHSRMTMFAVDPDRKVTLLEG 596

Query: 462 A--FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE--------- 510
           +  + +L          G  +  +  + ++   +         + +    +         
Sbjct: 597 SLIWDALSPELSASWFIGKDVYEVFNSLNQQLPDGQTPAFLQPLESILGGKSPVELQDHK 656

Query: 511 --RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER----------ALTEK 558
             R    G   +L    +  + I       M   ++VT+    ER           L   
Sbjct: 657 FGRWYRTGFQPILRRDPITGNSIENFVEGVMGFIMDVTELKDRERDIEAQVLEKRQLLAN 716

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             A ++A  +K+ F+ ++S+E+R+P+T +IG  +LL       L+++Q +  E I  S+ 
Sbjct: 717 EAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLD---VGLDAEQRELTENIFRSAN 773

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++NDILD + +++G + +      L  ++ EV + ++       +         + 
Sbjct: 774 ALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVSKMLSFTAERKGLTFNYEICSDIA 833

Query: 679 ---SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIP 731
                + D  RL Q+   +  N + F  +G     V ++   ++  +  F +++ G  I 
Sbjct: 834 LDLVVMGDPGRLRQVLCNLAQNGIKFCHEGHVKLNVFVEQETNDTIEVKFVIQDTGIGIE 893

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E++ K +F  F        R   G GLGL+I ++ + L  G ++++S     TT    IP
Sbjct: 894 EEVLKGLFQPFSQGDASTARKFGGTGLGLTISKNLLELMNGRMALASKRGEGTTATFWIP 953

Query: 790 SKE 792
            K+
Sbjct: 954 FKK 956



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/413 (13%), Positives = 117/413 (28%), Gaps = 48/413 (11%)

Query: 74  SLLTENNCLTIV-W-DG----KDETPEIIGQLHQRIDIPQTDTDLLS-FENWLK--FHHY 124
           +LL +     I  W DG     ++    +         P   ++LL  ++ W        
Sbjct: 308 ALLDKTQTPIIAMWKDGSVILPNKPARRLFNQDPAQGAPLEGSNLLEQWKVWNDDFSRQL 367

Query: 125 IKLSKATEKLRKEGQSFD-----LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
                    L K    F+     ++ +        +EG V         L+      ++ 
Sbjct: 368 ETDEHPISVLIKTEMPFETYRIGMLDQGGERLIFDVEGAVIRDEITGEFLAGVITCRDIT 427

Query: 180 ETTLKCKKLSN-HISVFKVLFDSLDFLVWHRDQAGDILWANI---SYKKNTETEGIVFQK 235
               +  ++       F+++ D++  LVW     G   + N    SY   TE + +    
Sbjct: 428 RIEHEISQIKEADKERFRLICDTMPQLVWTTGPDGAHDFYNSRWYSYTGLTEEDSLGGGW 487

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS-------FGE 288
                     E  ++   S    E    E     + G  + +    +             
Sbjct: 488 RKAFHPDDLVETERRWQSSLRTGEPYVIEYRCRSKDGEWRWFLGRALPLKNKQTGKIDKW 547

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLT-----VAIAIFDQNRYLQFHNRSFVELWE--- 340
            G   DV + +    +   T + L ++         A+ D +R +     S   +W+   
Sbjct: 548 FGTCTDVHETMEAKLEAKRTRQQLRSVIAHSRMTMFAV-DPDRKVTLLEGSL--IWDALS 604

Query: 341 --IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             +  ++        E+   L       +   +    E+I       E     +      
Sbjct: 605 PELSASWFIGK-DVYEVFNSLNQQLPDGQTPAFLQPLESILGGKSPVELQDHKFGRWYRT 663

Query: 399 TLHVIVTSNPR---------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
               I+  +P           G +    ++T   D E      V  + + + +
Sbjct: 664 GFQPILRRDPITGNSIENFVEGVMGFIMDVTELKDRERDIEAQVLEKRQLLAN 716



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/439 (12%), Positives = 126/439 (28%), Gaps = 53/439 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD---ILWAN--ISY 222
           ++ +     ++A TT    +  +  + F      +   VW          + + N   +Y
Sbjct: 164 VVDVVIARRDIARTTYD-TRARSESTTFHAQAKMI-ISVWQLSPQQTYFTLTFTNTESNY 221

Query: 223 KKNTETEGIVFQKAIGESRK-----LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
                 + +  ++ + ++ +        +         S           +    ++  +
Sbjct: 222 VPPVGAKKLAGKRDVLDAAEKKYSYSVNDPPSMTSSRDSRTRSPSFPLSPSAVAMSSSPF 281

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
             +   +          + K   + D L    +      + IA++ ++  +   N+    
Sbjct: 282 PPLGPPSQSSITSAPSMLQKITVMKDALLDKTQT----PI-IAMW-KDGSVILPNKPARR 335

Query: 338 LWEIDLAFLATNPSNDELL---------EFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           L+  D A     P     L         +F R        ++     E  F  Y+     
Sbjct: 336 LFNQDPA--QGAPLEGSNLLEQWKVWNDDFSRQLETDEHPISVLIKTEMPFETYRIGMLD 393

Query: 389 KDTWHL---PNGQTLHVIVTSNPRGGTIWMFENLTV-QVDLETKYNTLVKVQGETIDHLS 444
           +    L     G  +   +T     G I    ++T  + ++        +      D + 
Sbjct: 394 QGGERLIFDVEGAVIRDEITGEFLAGVI-TCRDITRIEHEISQIKEADKERFRLICDTMP 452

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG-----THIRNIAATCSRYYNESDGWDL 499
           + V   GPDG     N  + S     E     G      H  ++  T  R+ +     + 
Sbjct: 453 QLVWTTGPDGAHDFYNSRWYSYTGLTEEDSLGGGWRKAFHPDDLVETERRWQSSLRTGEP 512

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +       +   +S  G         L     PL N QT                +  K 
Sbjct: 513 YV-----IEYRCRSKDGEWRWFLGRAL-----PLKNKQTGKIDKWFGTCTDVHETMEAKL 562

Query: 560 EALRKADEIKNSFVQHVSY 578
           EA R   ++++     +++
Sbjct: 563 EAKRTRQQLRS----VIAH 577


>gi|153937779|ref|YP_001386293.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|152933693|gb|ABS39192.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 617

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 167/384 (43%), Gaps = 15/384 (3%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L     N    
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQ 258

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             +I +      +    +    ++         E+       E ++   +   II     
Sbjct: 259 NLNINSFILKEEQKKIRNKLELVYRNKRDIVCVEQVIQNNRREKINVESISTYIIYNNKP 318

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIK------NSFVQHVSYELRSPLTNIIGF 590
             +    ++T   + E+   +  + +   +E +        F+ ++S+EL++PL  I   
Sbjct: 319 AILSILRDITSQKQVEKLQKDVEKNIELLNESREYNKLITDFLANISHELKTPLNVIFTA 378

Query: 591 TDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN     + +
Sbjct: 379 VQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVN 438

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  G  + 
Sbjct: 439 LVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIY 498

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           +       + + SVK+ G  IPED  +++F+RFV      R  + G G+GL +V+SF+N+
Sbjct: 499 VTVKDFEDNIVISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNM 558

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           H G + I S     +     IP K
Sbjct: 559 HEGTIDIQSEIGKGSEFIINIPVK 582


>gi|153933211|ref|YP_001382742.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152929255|gb|ABS34755.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
          Length = 617

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 167/384 (43%), Gaps = 15/384 (3%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L     N    
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQ 258

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             +I +      +    +    ++         E+       E ++   +   II     
Sbjct: 259 NLNINSFILKEEQKKIRNKLELVYRNKRDIVCVEQVIQNNRREKINVESISTYIIYNNKP 318

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIK------NSFVQHVSYELRSPLTNIIGF 590
             +    ++T   + E+   +  + +   +E +        F+ ++S+EL++PL  I   
Sbjct: 319 AILSILRDITSQKQVEKLQKDVEKNIELLNESREYNKLITDFLANISHELKTPLNVIFTA 378

Query: 591 TDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN     + +
Sbjct: 379 VQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVN 438

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  G  + 
Sbjct: 439 LVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIY 498

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           +       + + SVK+ G  IPED  +++F+RFV      R  + G G+GL +V+SF+N+
Sbjct: 499 VTVKDFEDNIVISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNM 558

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           H G + I S     +     IP K
Sbjct: 559 HEGTIDIQSEIGKGSEFIINIPVK 582


>gi|149174179|ref|ZP_01852807.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148847159|gb|EDL61494.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 739

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 11/254 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  EA   A+  K+ F+ ++S+E+R+P+T I+GFTD+L      +   ++
Sbjct: 322 ERFQAISQLQQAKEAAEAANRSKSEFLANMSHEIRTPMTAILGFTDILINDLNQT---EE 378

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  I  +   LL L+NDILDL+ ++ G + + +     ++++N+V   +  +     
Sbjct: 379 IEVVRTIHQNGEYLLGLINDILDLSKIEDGKLDVEWLDCSPHEIVNDVISLLQVRAVAKG 438

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR--DNGDFI 720
           I ++V  +G +   +  D  RL QI   ++ NA+ F+  GS    + L + +  D     
Sbjct: 439 IPLEVNFEGPVPELIHTDPARLRQILINLIGNAIKFTEHGSVQLVIRLVSNQQSDQQKLH 498

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V + G  I  +  +++F  F        R   G GLGL+I +  + L GG + +SS+ 
Sbjct: 499 FDVFDTGIGIAAEQIENLFLPFTQADSSTTRQYGGTGLGLAICKRLVELLGGTIQVSSTV 558

Query: 779 EGVTTINCRIPSKE 792
              +T +  IP  E
Sbjct: 559 GKGSTFSVIIPVGE 572


>gi|228994184|ref|ZP_04154084.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
 gi|228765636|gb|EEM14290.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
          Length = 611

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 152/396 (38%), Gaps = 28/396 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 233 VKVHSHDEIGQLALAFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 292

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 293 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 345

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            D  +  FV +VS+E
Sbjct: 346 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IDRERREFVANVSHE 391

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 392 LRTPLTTMRSYLEALSDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 450

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 451 LMKEWVDFTDFFNNVIDRFEMS-KEQNVIFKRSFSKKSRFIDMDADKITQVLYNIISNAL 509

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++  + +F RF         Q  G GLG
Sbjct: 510 KYSPEGGTVTYRLRDREDMLEISVSDQGMGIPKENVEKIFERFYRVDKARSRQMGGTGLG 569

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792
           L+I +  I  HGG +   S +   TTI   +P +KE
Sbjct: 570 LAIAKEMIEAHGGSIWAKSEEGKGTTIYFVLPMAKE 605


>gi|148543263|ref|YP_001270633.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri DSM 20016]
 gi|184152674|ref|YP_001841015.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|194467422|ref|ZP_03073409.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           reuteri 100-23]
 gi|148530297|gb|ABQ82296.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri DSM 20016]
 gi|183224018|dbj|BAG24535.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|194454458|gb|EDX43355.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           reuteri 100-23]
          Length = 621

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 161/416 (38%), Gaps = 31/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   ++  +     + 
Sbjct: 210 EEMRKQTLRIARGDYSGQVKVLGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLDSILS 269

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N     L   E      G  I ++      Y           
Sbjct: 270 HMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDVLDIRHDYTVRQLVNGEQR 329

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +I    +   +L          +L     P+      ++ +         +        
Sbjct: 330 EMIIDMSNSGNNL----------ILNAYFSPIQRESGFVSGLVCVLHDVTSQQ------- 372

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L             Q+++ +   +  ++
Sbjct: 373 --KEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAWQD-KEIAPQFLKVVQDETDRMI 429

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI------RIKVISDG 675
            ++ND+L L+ +DAG  KLN   + +N+L N +       + +          I+     
Sbjct: 430 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 489

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP    
Sbjct: 490 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDL 549

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A   ++ G GLGL+I +  IN+ GG + + S +   +T    +P
Sbjct: 550 GRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605



 Score = 38.4 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + + + +      IL +++  +   D+   +   N   ++L  ++        S  ++
Sbjct: 252 EAQESSDSERRRLDSILSHMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDV 311

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----G 410
           L+ +R    + + +N            +  E   D  +  N   L+   +   R      
Sbjct: 312 LD-IRHDYTVRQLVN-----------GEQREMIIDMSNSGNNLILNAYFSPIQRESGFVS 359

Query: 411 GTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
           G + +  ++T Q   E            +  T +      ++ LS+G
Sbjct: 360 GLVCVLHDVTSQQKEERERKQFVSNVSHELRTPLTSVRSYVEALSDG 406


>gi|184154492|ref|YP_001842832.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
 gi|183225836|dbj|BAG26352.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
          Length = 619

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 163/417 (39%), Gaps = 34/417 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   +   +     + 
Sbjct: 211 EEMRKQTLRIARGDFSGQVKVMGNDELGQLAGAVNNLSVRVEESQESSDAERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N          +     G  I ++     ++           
Sbjct: 271 HMSDGVLATDRRGNLTIVNNTALQFLNIADEEQVLGKSILDVLKIRRQFS---------- 320

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             I    DE +      +L  D +L     P+      ++ +         +        
Sbjct: 321 --IRHLVDEDQDQVILDDLNEDLILSAYFSPIKRESGFVSGLVCVLHDVTSQQ------- 371

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L    +       S+++  +S  +  ++
Sbjct: 372 --KEERERKEFVSNVSHELRTPLTSVKSYVEALSDGAIND-PELASRFLGVVSDETERMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-------ENNIRIKVISD 674
            ++ND+L L+ +D+G  KLN   + +N+L N +       +        +    I     
Sbjct: 429 RMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYFT 488

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP   
Sbjct: 489 KKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKD 548

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF  V  A   ++ G GLGL+I +  +NL GG + + S +   +T    +P
Sbjct: 549 LGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|304312202|ref|YP_003811800.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
 gi|301797935|emb|CBL46157.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
          Length = 913

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 132/264 (50%), Gaps = 9/264 (3%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +  A+       +     + R L + N+ L  A + ++ F+ ++S+E+R+P+  ++G  +
Sbjct: 500 VARAEAEARQTYIQQLDTSNRQLDKSNQELAAAIQARSEFLANMSHEIRTPMNGVLGMLE 559

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L++     +LN  Q Q +E    S   LL L+NDILDL+ +++G + L      L D L+
Sbjct: 560 LVEN---ANLNDVQKQQLEIARRSGQTLLALINDILDLSKIESGKLALESLPFSLQDFLS 616

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVIL 710
           ++++    ++ E NI   +     +  +V  DR RL Q+ + ++SNA+ F+  G  T+ +
Sbjct: 617 DLRELYGKQLREKNITCTLACAEDVPEWVAGDRIRLWQVLTNLVSNAVKFTKDGGVTISV 676

Query: 711 KAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
              ++  +    F V + G  IP+     +F+ F        R   G GLGL+I ++ + 
Sbjct: 677 NLLQEGQEERLSFQVTDTGIGIPKAAQAKIFDSFSQADGSTTRKYGGTGLGLTIAQNLLK 736

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           L GG +S+ S +   +T    +P 
Sbjct: 737 LMGGAISVRSEEGEGSTFAFSMPL 760


>gi|121997145|ref|YP_001001932.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588550|gb|ABM61130.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 657

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/506 (20%), Positives = 191/506 (37%), Gaps = 39/506 (7%)

Query: 306 THTYEILHNLT--VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
               E+L      + +A       L + N +   +           P  D  LE  R A 
Sbjct: 21  EELLEMLEGAPELIGVADLCCGHEL-YRNPAMRRVMG--------EPRPDIPLEQ-RIAQ 70

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQ---TLHVIVTSNPRGGTI----WM 415
             PE    +   E I +  +      +T     +G     L  I+      G +     +
Sbjct: 71  SHPEWAVRRILDEAIPAARRDGVWQGETTVRAVDGTEFAALQTIIVHADEHGEVQRCSTI 130

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRL 474
             ++T Q   E       +     ++          PD  R+ L   A  ++   +   L
Sbjct: 131 IRDVTEQKATEHALRKSEERYRRFLEDFLGVAYQIDPDDYRVVLLRGAVEAITGYDRAYL 190

Query: 475 SPGTHIRN---IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
               +       A    R   E          +       +   G+   + D      + 
Sbjct: 191 LDHGYCWGDLIHADDWERVAAEDAAIRRRGERVGDLRYRIRHRDGSTRWVRDIWQMVELP 250

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                       ++T+ +  E+A         +AD  + +F+  VS++LR+PL  ++GFT
Sbjct: 251 ANGRQVFQGALYDITERMELEQA-------RAQADRDRTTFLAAVSHDLRTPLNAVVGFT 303

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+ ++   L+++Q +YVE    +S  LL LV+ +L L+ ++AG M+L  +   L   L
Sbjct: 304 GLLQDTE---LDAEQRRYVELCRTASQTLLGLVDTLLSLSRLEAGEMQLECAPFDLRAFL 360

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVI 709
            +    +     E  + + +  D  +      D  R  Q+   + +NA+ F+ +GS  + 
Sbjct: 361 EDEVGLLEALAAEKGLSLSLHIDPAVPGWVEGDAVRFGQVLYNLANNAIKFTEQGSVVIT 420

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768
           ++ A  +G    +V++ G  I E   K +F  F        ++ G GLGL+I +  + L 
Sbjct: 421 VEPADGDGLLRVAVRDTGPGISEADQKRIFRAFTQGGDVFRRQEGSGLGLTICKELVRLM 480

Query: 769 GGHVSISSSDEGVTTINC--RIPSKE 792
           GG + + S+    +T     R+P+ E
Sbjct: 481 GGDLGLKSAPGAGSTFQFTARLPAVE 506


>gi|315037329|ref|YP_004030897.1| histidine kinase [Lactobacillus amylovorus GRL 1112]
 gi|312275462|gb|ADQ58102.1| putative histidine kinase [Lactobacillus amylovorus GRL 1112]
          Length = 595

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 172/422 (40%), Gaps = 40/422 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K   H+ +G  +  V + SN   G +   F  L+V+++  + + ++  +     + 
Sbjct: 188 EEMQKQALHIADGDYSSQVKIYSNDELGQLGRAFNTLSVRIERSQEESDSERRRLDSVLS 247

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    +    +E  +     I  +         ++   DL +
Sbjct: 248 HMSDGVLATDRHGNVSVVNQMALNFLNVKEEDVIN-KPIAEVLG-----LKDTSSQDLIS 301

Query: 502 ---AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               I+ + D              + +L  S   +      ++          E+     
Sbjct: 302 SQKEIVVTIDP---------NTRDEMILHASFSLIKRVTGFVSGSVCVLHDVTEQQ---- 348

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K ++ +  FV +VS+ELR+PLT++  + + L        N    +++E     ++
Sbjct: 349 -----KNEDSQKQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNI-APKFLEVTQQETS 402

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-------RIKV 671
            ++ ++ND+L L+ +D G+ K++   + LND +N +       +  +          IK 
Sbjct: 403 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKR 462

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +      D  +++Q+   I++NA+ +S  GS + ++  ++    I S+ + G  IP
Sbjct: 463 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQNKNHVILSISDQGLGIP 522

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P
Sbjct: 523 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 582

Query: 790 SK 791
            +
Sbjct: 583 YE 584


>gi|327478668|gb|AEA81978.1| signal transduction histidine kinase [Pseudomonas stutzeri DSM
           4166]
          Length = 803

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/732 (16%), Positives = 249/732 (34%), Gaps = 98/732 (13%)

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAI-KIEGRVSGSCAFL--RILSLDGIYSE-L 178
             ++  +  +    +G              +   +G   G+   +  +   L     E L
Sbjct: 100 DALQDPRFRDNPLVQGDP---HIRFYAGTPLTSPDGHNLGTLCVIDRKPRRLSSEQRETL 156

Query: 179 AETTLKCKKL----------SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE- 227
                +  +L          +   ++ + + DS    V      G +   N + ++    
Sbjct: 157 ERLGRQVIRLFEQHLLAHRHAEQAALQQAILDSASSAVLITRPDGIVTSVNPTAERLLGY 216

Query: 228 ----------TEGIVFQKAIGESRKLFKEEIKKRMISS-SALEKNFCETVSTLEHGNNKS 276
                     T  +   +A+    KL   E++  + +  + L          +     + 
Sbjct: 217 SEQALAGHPLTTALFRHEALERRAKLLSSELEMPVEAGFAVLTAPLHLGRREMSEWRLRH 276

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-------------ILHNLTVAIAIFD 323
                V    G   I     ++  +   L + Y+             I   +   +  F 
Sbjct: 277 QSGSEVPVLLGVTAIH---DEQEQLRGYLINAYDLAYQEQLQLRLQQIAAQVPGMLFQFH 333

Query: 324 QNRY----LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
                     + +    +++ +    LA+  S   ++  + + +           +  + 
Sbjct: 334 WRGNGSSCFPYVSEGVEQIYGLSPGQLAS--SFAPIVGRVHALD-----------RSTLL 380

Query: 380 SVYKSSETHKDTWHL------PNGQTLHVIVTSNP----RGGTIW--MFENLTVQVDLET 427
           S  + +      WH       P    + V   + P     G  +W     ++T +   + 
Sbjct: 381 SSIRKAAAELTPWHSEHRVDHPRKGLIWVEARATPLRQVDGSVLWHGFVTDITARKAEQL 440

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           + +   ++    ++ LSE V     +G + L N   +     +             AA  
Sbjct: 441 ELDKQQEMNRRLLEALSEAVIACDAEGNLTLFNEKAKQWHGAD-------------AAPV 487

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           S     S      A  +T    E   L+  L    + V+++ ++ L          N   
Sbjct: 488 SPDEWASHYQLYRADGVTPLQPEEIPLRRAL--GGEHVIDHEMVLLSQGTPRHALSNADP 545

Query: 548 SVRAERALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              ++  L      L       + + ++  F+  VS+ELR+PLT+I G   L+ ++ +G 
Sbjct: 546 LYTSDGQLLGAVAVLHDITERKRIERLQREFISTVSHELRTPLTSITGALALVCSNVMGE 605

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           +  +  + ++    +S  L  L++D+LD+  + AG M+ +     L   L    +S  + 
Sbjct: 606 VPGQMRELLDIAQQNSQRLGALIDDLLDMDKLHAGKMRFDLLEQPLLPQLELALRSNGSY 665

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
              + +++++  D        D  RL Q+ S +LSNA  FS  G  V L A   +G    
Sbjct: 666 AERHGVQLRL-GDCPAVQVEIDAMRLQQVLSNLLSNAAKFSPPGEQVELLARMRDGHVRV 724

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  I ++  + VF +F         Q+ G GLGL+I +  I   GG +   S+  
Sbjct: 725 SVRDRGPGISDEFRERVFQKFAQADSSDSRQQGGTGLGLAISKELIEHMGGQIGFESAPG 784

Query: 780 GVTTINCRIPSK 791
                   +P +
Sbjct: 785 QGACFWFELPVR 796


>gi|37675668|ref|NP_936064.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200207|dbj|BAC96034.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 646

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A+  K+ F+  +S+E+R+P+  IIG   LLK      L+S+Q QYVE I
Sbjct: 230 ELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEM---DLSSEQKQYVEMI 286

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + SS  LL+++NDILD + ++AG M ++     L+DL+ ++      K H  N++  V  
Sbjct: 287 NHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAHAKNLQFVVEL 346

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGS 728
              +      D + L Q+ + +L NA+ F+ +G   ++ A   +        F V ++G 
Sbjct: 347 AEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVVAKELDAQHIPHIRFQVFDSGI 406

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ++  + VF RF        R   G GLGL+I    ++L GG + + S     +    
Sbjct: 407 GIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELKSEVGLGSCFEF 466

Query: 787 RIP 789
            +P
Sbjct: 467 SVP 469


>gi|265767426|ref|ZP_06095092.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263252731|gb|EEZ24243.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 556

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 178/384 (46%), Gaps = 22/384 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q   + K   +  +    + H+   V V   D ++  +N    +    +      G  ++
Sbjct: 28  QSASDRKLENVNCLFDAILTHIHAYVLVIDSDFKVLKTNYYDLTHLSPDGKEKRVGDLLQ 87

Query: 482 NIAATCSRY----YNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDS---------VL 526
              A  ++     +       +  AI  +F    E   LQ +L +  D          + 
Sbjct: 88  CRNALSAKGGCGTHAFCQECPVRGAIGNAFRQKKEFTDLQSSLNIAIDEHEFVKCDVMIS 147

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              +      + +LT  ++T   + E AL E  E    AD  K++F+ ++S+E+R+PL  
Sbjct: 148 GVFMTLDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNA 207

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL      +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + 
Sbjct: 208 IVGFSELLA---AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVD 264

Query: 647 LNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           +N LLN+++Q    K+  N+ ++I             DR R+ Q+ S  +SNA+ F+++G
Sbjct: 265 INLLLNDLEQLFRMKIGSNSPVQIITEPGLSSCMVHTDRNRIAQVVSNFVSNAIKFTTEG 324

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
           S + +          F V + GS I  D  + VF+RFV    +  + G GLGLSI ++ +
Sbjct: 325 S-IRIGYQSSENGLRFYVSDTGSGISADKLEGVFDRFVRL--QSDKNGNGLGLSICKTIV 381

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
           N  GG +   S     +T    +P
Sbjct: 382 NKLGGEIGAESEVGKGSTFWFTLP 405


>gi|260903049|ref|ZP_05911444.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308108353|gb|EFO45893.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 873

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 162/368 (44%), Gaps = 16/368 (4%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +  +    E  +H  + + +  PDG I   N AF  L +     +   +          
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSP----GELLQ 289

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFV 543
               +++   L +  + S    R  +    +      +E  + P+ +      + +    
Sbjct: 290 GEDTDANTVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVER 349

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    E+ L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L  ++     
Sbjct: 350 DITDRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP 409

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +  +  S+  L+ ++NDILD + V+AG + L      L  L+       A +  
Sbjct: 410 ---RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQAD 466

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           + N+++ V     + +  V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FS
Sbjct: 467 KKNLKLLVDIPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESELGFDFS 525

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S    
Sbjct: 526 VTDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGN 585

Query: 781 VTTINCRI 788
            +  +  +
Sbjct: 586 GSCFSFSL 593


>gi|221133435|ref|ZP_03559740.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. HTCC2999]
          Length = 1029

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/630 (17%), Positives = 237/630 (37%), Gaps = 49/630 (7%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
              +   + +  +   +  D+   I+W N S  K T       ++ +     LF+     
Sbjct: 133 STELLSQVIELSENTFFLTDENNKIIWTNTSATKQTGYT----KEILKGMNPLFRVTDNT 188

Query: 251 RMISSSALEKNFCETVS-----TLEHGNNKSYKIV----RVLNSFGEAGIAI---DVSKE 298
            +     L+  F + +       L   N ++Y +      V    G+ G  +   D++  
Sbjct: 189 SIAVLKRLKTAFRDKIDFNGEIQLYKANKEAYWVKLTVKPVSLDSGKTGFLLSEYDITPR 248

Query: 299 ITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             +  +L         IL +    I   + N  ++  N   +EL       L    S D 
Sbjct: 249 KLMEHELRAKTNLQRAILDSAQQIIISTNANGAIESLNEFAIELLGWQPYELVHKSSMDV 308

Query: 355 LLEFLRSANKLPEQL---------NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
            +                      N++ + E    + K            +  T+ +IVT
Sbjct: 309 FIRRAEYRRFAQHIASQHEYHIMENFEAFHELTNKLDKVEFAFTFETKDRSLLTIELIVT 368

Query: 406 SNPR-----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                     G +++ +++T    L+ +      +  ET      G            +N
Sbjct: 369 PLFDRGGKLEGYLYIGKDITHVEILKAQTQRSQALLEETSRIAQLGSWELD-----LRTN 423

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             + S      + L       +I  T    +   +   +    + +  +        L  
Sbjct: 424 ELYWSDETYRIHELPLSA---DINVTDGINFYAPEARPIIQDAVNNAIEFGTPWDLQLPF 480

Query: 521 LSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           ++       +  +  A+   +  +++  + +   ++ E  +   +A++ K+ F+ ++S+E
Sbjct: 481 ITAKNNHIWVRAIGAAEFKDSKVISIKGTFQNITSIKETEQRANEANQSKSDFLANMSHE 540

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIG  +LL+ +   SL ++Q++Y + I  SS  LL L+NDILD + ++AG + 
Sbjct: 541 IRTPINGIIGMNELLQKT---SLTTQQTEYTQAIQRSSQALLGLINDILDFSKIEAGKLN 597

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           LN   + +++ +  + + I       N+++ +     L + ++D  RL QI   + SNA+
Sbjct: 598 LNVKKVAMDEFMENIYKEIQPLSDAKNLQLDIQVCP-LVTIMSDPMRLRQILINLCSNAI 656

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            F+  GS  I  +  D     F++ + G  IP +    +F +F       +R   G GLG
Sbjct: 657 KFTEYGSIRISFSVIDEQYLRFTISDTGIGIPSEKSSQLFEKFNQLDTSSKRSIGGTGLG 716

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCR 787
           L+I +    L GG +  +   +        
Sbjct: 717 LTISQQLSQLLGGAIGFNPEYQEGAEFWFT 746


>gi|322804613|emb|CBZ02165.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 617

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 167/384 (43%), Gaps = 15/384 (3%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L     N    
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESASELLICNNNNELQ 258

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             +I N      +    +    ++         E+       E ++   +   II     
Sbjct: 259 DININNFILKEEQKKIRNKLELVYKNKRDIVCVEQVIQNNKREKINVESISTYIIYNNKP 318

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIK------NSFVQHVSYELRSPLTNIIGF 590
             +    ++T   + E+   +  + +   +E +        F+ ++S+EL++PL  I   
Sbjct: 319 AILSILRDITSQKQVEKLQKDVEKNIELLNESREYNKLITDFLANISHELKTPLNVIFTA 378

Query: 591 TDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN     + +
Sbjct: 379 VQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVN 438

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  G  + 
Sbjct: 439 LVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIY 498

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           +       + I SVK+ G  IPED  +++F+RFV      R  + G G+GL +V+SF+N+
Sbjct: 499 VTVKDFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNM 558

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           H G + I S     +     IP K
Sbjct: 559 HEGTIDIQSEIGKGSEFIINIPVK 582


>gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
 gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
          Length = 430

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 165/429 (38%), Gaps = 39/429 (9%)

Query: 370 NWKTWKENIFSVYKSSETHK--DTWHLP--NGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
             + W + +  + ++   H+      LP  + Q+L +++ +  R       +++  +   
Sbjct: 21  KQRQWNKEVERIAQAVSEHRADQPLELPISSSQSLQLLIYAIER-----WHKDIGHR--- 72

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           + +     +       + + G+        I+  N     ++              +   
Sbjct: 73  QQEMLENNERLRAIFANATVGLIAVNERLHIEAVNHMACKMFDI------------DAEG 120

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFV 543
              RY  ES       +++       + L   +EL + +  +L  SI PL     +   V
Sbjct: 121 AKGRYILESIRNPHLESLVRYVVVNGEPLSSDIELSTGNELILRVSISPLKVDNRVNGAV 180

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              + +   + L          D++K   V ++S+E+++PLT+I GF + L    +    
Sbjct: 181 ISLEDITELKRL----------DQVKAELVANMSHEIKTPLTSIKGFAETLLDGAMDD-R 229

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               +++  I + +  +  L+ND L L+ +++    ++   I L++L+  +   + +   
Sbjct: 230 ETCRRFLTIIDSEADRMSRLINDSLTLSRLESQDRNISIEPINLHELIVNILDMVDSSAK 289

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             NI +             +  R+ Q+   ++ NA+ ++  G  V +    +  D   SV
Sbjct: 290 TKNIDVTFYDQATDMKIDGNEDRMHQLMLNLIDNAIKYTPSGGKVTITIKDEGEDAFISV 349

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I ++    +F RF            G GLGL+IV+  +    G + ++S     
Sbjct: 350 KDTGIGIAKEHMPRLFERFYRVDKGRSRNMGGTGLGLAIVKHVVMSMNGTIDVNSELGRG 409

Query: 782 TTINCRIPS 790
           T    R+P 
Sbjct: 410 TEFIVRLPK 418


>gi|327182634|gb|AEA31081.1| putative histidine kinase [Lactobacillus amylovorus GRL 1118]
          Length = 618

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 172/422 (40%), Gaps = 40/422 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K   H+ +G  +  V + SN   G +   F  L+V+++  + + ++  +     + 
Sbjct: 211 EEMQKQALHIADGDYSSQVKIYSNDELGQLGRAFNTLSVRIERSQEESDSERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N    +    +E  +     I  +         ++   DL +
Sbjct: 271 HMSDGVLATDRHGNVSVVNQMALNFLNVKEEDVIN-KPIAEVLG-----LKDTSSQDLIS 324

Query: 502 ---AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               I+ + D              + +L  S   +      ++          E+     
Sbjct: 325 SQKEIVVTIDP---------NTRDEMILHASFSLIKRVTGFVSGSVCVLHDVTEQQ---- 371

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K ++ +  FV +VS+ELR+PLT++  + + L        N    +++E     ++
Sbjct: 372 -----KNEDSQKQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNI-APKFLEVTQQETS 425

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-------RIKV 671
            ++ ++ND+L L+ +D G+ K++   + LND +N +       +  +          IK 
Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKR 485

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +      D  +++Q+   I++NA+ +S  GS + ++  ++    I S+ + G  IP
Sbjct: 486 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQNKNHVILSISDQGLGIP 545

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P
Sbjct: 546 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605

Query: 790 SK 791
            +
Sbjct: 606 YE 607


>gi|86160538|ref|YP_467323.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85777049|gb|ABC83886.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1853

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 131/274 (47%), Gaps = 4/274 (1%)

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
             S++ LE     L N +  L     ++   A R+L EK E L+     K+ F+ ++S+EL
Sbjct: 1409 RSNAELEAQAAEL-NEKARLLEQKNSEVELASRSLEEKAEQLQLISRYKSEFLANMSHEL 1467

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+PL +++  + +L  ++ G+L  +Q ++   +  S   LL L+N+ILDL+ ++AG M +
Sbjct: 1468 RTPLNSLLILSKMLAENRDGNLTVEQVKFASTVYTSGHELLGLINEILDLSKIEAGKMPI 1527

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
                  L  + ++++Q+         +  +V     L      D  RL QI   ++SNA 
Sbjct: 1528 EPRDTRLESVRDDLEQTFRHVAEHKGLGFQVRMAPDLPDRIHTDPTRLQQILKNLISNAF 1587

Query: 700  DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
             F+ +G  V+  +    G   F+V++ G  IP D  K +F  F         +  G GLG
Sbjct: 1588 KFTERGEVVLEVSPAAGGALAFAVRDTGIGIPADKQKLIFEAFQQADGTTSRKYGGTGLG 1647

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            L+I      L GG + + S+    +     +P++
Sbjct: 1648 LTISREIARLLGGSIEVESAPGRGSVFTLVLPAR 1681


>gi|78223629|ref|YP_385376.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78194884|gb|ABB32651.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 827

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 8/243 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E   +A+ +K  F+  +S+E+R+P+  IIG   LL+ +    L+ +Q + V+  
Sbjct: 313 ELVQAREEAEEANRVKGEFLATMSHEIRTPMNAIIGINQLLQETH---LSQQQRRLVDDS 369

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S ++  LL ++NDILD + V+A  ++L+   + L   +  +++  A K    NI + ++ 
Sbjct: 370 SNAAESLLTIINDILDFSRVEARRLELSDEALELRSFVESLRRLFAVKAERENISLSILV 429

Query: 674 -DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI 730
            D        D  RL Q+ + +LSNA+ F+  G  V L A  D   G+ +F+V + G  I
Sbjct: 430 GDEAPQFICGDPARLRQVLTNLLSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTGIGI 489

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +D  + +F  F        R   G GLGL+I    + L GG + + S           +
Sbjct: 490 EKDKHERIFEMFRQADSSTTRNYGGTGLGLAITRGLVELMGGTIEVESEAGKGAVFRVLL 549

Query: 789 PSK 791
           P +
Sbjct: 550 PLR 552


>gi|299065362|emb|CBJ36531.1| Sensor protein [Ralstonia solanacearum CMR15]
          Length = 995

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 120/616 (19%), Positives = 215/616 (34%), Gaps = 52/616 (8%)

Query: 201 SLDFLV--WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
           +L      W R +A  +L A         T           +       +     + +A 
Sbjct: 9   ALPLPAHLWRRGRAALLLCATA--IALLTTSDCAQADGTTRALPPIGHPLMPPAAAQTAS 66

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
                            +  ++ + +             E  +  QL   + +L +L   
Sbjct: 67  GTPAAAIALW-------TLAVLSIRHVQLRRENRRRRRAEADLARQLDFHHRLLESLPFP 119

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           +A  D        N +F  L+      L    +   L           + ++ +      
Sbjct: 120 LAAQDTQHRYVAVNAAFCRLFGQPREALLGR-TPAHLGRRCAHTAARAQDIDRRATATG- 177

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETK-YN 430
                       T    +G+  HV+    P        GGT+    ++    D +     
Sbjct: 178 -----QGAREALTIAAADGRERHVLYWVAPIHGPDGRPGGTVASLIDIDEIRDAQEAPAE 232

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS-PGTHIRNIAATCSR 489
              +   E  + L   V  F  + R   +    R L       L  P    R+   + +R
Sbjct: 233 QRAQRLHELTESLPALVCQF--EMRPGTARGRMRHLAGNTSETLGAPAGKARSRLPSPAR 290

Query: 490 YYNESDGWDLFAAIITS------FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             +  D   +  A + S       D + +   G   +     L     P   A     + 
Sbjct: 291 LVHRDDRQRMRGAALQSAAQLTLLDQQFRHGDGDGPV---RWLHVRARPRRGADGCTVWN 347

Query: 544 NVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                V AERA    L    +A   A   K+ F+  +S+E+R+P+  ++G     +    
Sbjct: 348 GYLRDVTAERAQADALVSARQAAESALRAKDRFLATMSHEIRTPMNGVLGLV---ELLLQ 404

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q + V     SS  LL++++DILD A ++AG + +  +   L  LL+     +A
Sbjct: 405 TRLEREQQRMVTLAQESSRALLHVLDDILDYAKIEAGRLSIAPAPTDLRALLDSTVGLLA 464

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714
           ++ HE ++ ++V  D  +  +   D  RL Q+ S +LSNA+ F+  GS  +    ++AA 
Sbjct: 465 SRAHERSLAVRVDVDAAVPATVSVDGIRLRQVLSNLLSNAIKFTEHGSVRLSAACMEAAA 524

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
           D    I  V + G  I  +   ++F  FV        +  G GLGL+I      L GG +
Sbjct: 525 DTAHLIIQVADTGIGIAPEAQATLFTPFVQADSTVTHRHGGTGLGLAISRQLAQLMGGSL 584

Query: 773 SISSSDEGVTTINCRI 788
            + S+    TT+  R+
Sbjct: 585 DMDSTPNVGTTLTLRL 600



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 89/346 (25%), Gaps = 29/346 (8%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           L      +    T  L   G      A  Q             + A L I  +       
Sbjct: 34  LTTSDCAQADGTTRALPPIGHPLMPPAAAQTASGTPAAAIALWTLAVLSIRHVQLRRE-N 92

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQKA 236
                    L+  +     L +SL F +  +D     +  N ++ +      E ++ +  
Sbjct: 93  RRRRRAEADLARQLDFHHRLLESLPFPLAAQDTQHRYVAVNAAFCRLFGQPREALLGRTP 152

Query: 237 IGESRKLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN-----SFG 287
               R+      +     R  +++        T++  +         V  ++       G
Sbjct: 153 AHLGRRCAHTAARAQDIDRRATATGQGAREALTIAAADGRERHVLYWVAPIHGPDGRPGG 212

Query: 288 EAGIAIDVSK-----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
                ID+ +     E     +    +E+  +L   +  F               L    
Sbjct: 213 TVASLIDIDEIRDAQEAPAEQRAQRLHELTESLPALVCQF--EMRPGTARGRMRHLAGNT 270

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG----Q 398
              L       +    L S  +L  + + +  +                +   +G    +
Sbjct: 271 SETLGA--PAGKARSRLPSPARLVHRDDRQRMRGAALQSAAQLTLLDQQFRHGDGDGPVR 328

Query: 399 TLHVIVTSN--PRGGTIW--MFENLTVQVDLETKYNTLVKVQGETI 440
            LHV         G T+W     ++T +        +  +     +
Sbjct: 329 WLHVRARPRRGADGCTVWNGYLRDVTAERAQADALVSARQAAESAL 374


>gi|288869902|ref|ZP_06112218.2| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288869200|gb|EFD01499.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 950

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/644 (16%), Positives = 237/644 (36%), Gaps = 54/644 (8%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKKNTETEGIVFQKAIGES 240
            +       +     + + +         DQ   +L AN S+ K++      F  +    
Sbjct: 36  ERPDAAGMGMDGLLPMLEMIGSPACQCIFDQELTLLCANPSFYKSSGYSKEEFNSSCPTL 95

Query: 241 RKLFK------EEIKKRMISSSALEKNF--CETVSTLEHGNNKSYKIVRVLNSFGEAG-- 290
           R+         + I + + +++   +N    +    ++ G     +I   +     +G  
Sbjct: 96  RQYLHQHPGEFDIISQALSAAAEHGQNLFSADCRIPVKTGTFLHVRIHGTITEETTSGCP 155

Query: 291 ----IAIDVSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRY-LQFHNRSFVELWEIDLA 344
                  D+S  +   +Q    +E ++      + I D + Y L + N++  +  +    
Sbjct: 156 TVFMTLTDISDLVDQAEQKVQYFEWMMDEYIGNVYISDMDSYELLYINQTAADTLQC--- 212

Query: 345 FLATNPSNDELLEFLRSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                P   +  E ++   +  P   N +   +  +     +     T+ + N      I
Sbjct: 213 -TKKAPLGHKCYEIIQGRTEPCPFCTNSRLRTDEFYEWEFDNPLLNRTFMIKN-----RI 266

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG--RIKLSNP 461
           +  N     + +  ++      E K     + +   I  +  G+A         I     
Sbjct: 267 IDWNGHRARLELSHDM---FSTEYKLAKKDRERDALIRTIPGGLARLDARDCSTIMWYGA 323

Query: 462 AFRSLWKTEENRL-------SPGTHIRNIAAT--CSRYYNESDGWDLFAAIITSFDDERK 512
            F  +    E +            H  +++           +     F + I + D + K
Sbjct: 324 NFLDIIGYTEEQFENELGRQCTYIHPDDLSRLQLLLEQIRITGESTAFESRIITRDGQVK 383

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            L  T    S     +  IP   +  +    +  +  R ++AL E  +A R A+  K +F
Sbjct: 384 ILTMTFCYASGEN-SWDGIPSFYSIGIDLTKDRAEQERQKKALEEAYQAARVANSAKTNF 442

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+++R+P+  I+G   + + +   S   K    +  I+ SS  LL+LVN++LD++ 
Sbjct: 443 LSSMSHDIRTPMNAIMGMAAIAQANL--SSPEKIRDCLSKINVSSRHLLSLVNEVLDMSR 500

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIF 691
           +++G + L    + L +L+  V       + E +++ ++ +   +  + + D  RL Q+ 
Sbjct: 501 IESGKIDLTPEEVKLPELIENVFAMCKPLISEKDLQFQISASKVRHETVITDGDRLQQVL 560

Query: 692 SKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             +L+NA+ ++  G  + L              F F + + G  + E+    +F  F   
Sbjct: 561 INLLTNAVKYTPNGGRISLSIKEIPSLSSQKAQFEFIITDTGIGMSEEFLPHIFEPFSRA 620

Query: 746 AHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 + +G GLG++I E+ + +  G + ++S     +     
Sbjct: 621 EDSRISKIQGTGLGMAITENIVRMMNGSIEVTSRLGEGSQFTVT 664


>gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 809

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 146/341 (42%), Gaps = 32/341 (9%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESD----GWDLFAAIITSFDDERKSLQGTL 518
           F   +  E   L P   + N A   +R   + D    G D    +  +F    + ++   
Sbjct: 335 FMFAYGVERIVLRPLNKLHNSADALARGEYDVDLPPAGSDEVGGLTRAFSGMARKIKSHT 394

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             L D V E +                 +       L    +    A+  K+ F+ ++S+
Sbjct: 395 RELEDRVRERT----------------GELEEKSSQLEAARDKAETANRAKSEFLANMSH 438

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I G   LL+T++   L+S Q +YV+   +S++ L  L++DILDL+ V+AG M
Sbjct: 439 EIRTPLNGITGMMQLLQTTR---LDSNQKEYVDLALSSASRLTRLLSDILDLSRVEAGRM 495

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
            +      + +L   V +    +  E  I ++   D  L S  + D  RL QI   ++ N
Sbjct: 496 VILEEEFNVQELCRSVCELFRIQAGEKGIELEYTLDPSLPSRLMGDETRLQQILFNLVGN 555

Query: 698 AMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           ++ F+ +G  V +         D    + +V + GS I  +    +F  FV       RR
Sbjct: 556 SLKFTREG-RVRINWTLQKRGLDRHQVLITVTDTGSGIAPEKLDDLFQPFVQEDGSSTRR 614

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLGLSIV   ++L  G +S+ S+    T     +P K
Sbjct: 615 HEGAGLGLSIVSRLVDLMHGTISVDSAPGEGTAFYIFLPLK 655


>gi|256829206|ref|YP_003157934.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578382|gb|ACU89518.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1050

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/512 (19%), Positives = 197/512 (38%), Gaps = 36/512 (7%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            ++ + D       +    +  I   D   R   F N +   ++            +D  
Sbjct: 384 AQVQITDSEKRYKALFDANSDGILAADSVTRRFVFANPAVCRMFGYSEEEFRGLKVDD-- 441

Query: 356 LEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
              +     L E L N+         V ++         +        ++  N     + 
Sbjct: 442 ---IHPQENLEEVLGNFNAQALGQTDVAEALPCLHRDGSVFTADIRSFLLKINGTSCAVG 498

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +F ++T +  +        +     I   ++G+  +         +P ++ +   E++ L
Sbjct: 499 LFRDVTERSQILDALRQTQERLALAIAGSNDGIWDWDRVADQVYFSPRWKEIIGYEDHEL 558

Query: 475 S----------PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
                             + A  +++++      +    +   D   + + G    L D 
Sbjct: 559 RNDLEEWRSRIHPEDRERVLAVNNQFFSSDASHFVIEYRLRHKDGTYRWIMGRGTCLRDD 618

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                 +P   A    +  ++T+    E  L    +A   A   K++F+ ++S+E+R+PL
Sbjct: 619 ----EGVPCRMAG---SHADITERKAMELELVGVRDAALAASVAKSAFLANMSHEIRTPL 671

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G   LL +S   SL  +Q  YV     S   L  L++DILD++ ++AG + L    
Sbjct: 672 NGIMGMLQLLDSS---SLTEEQKNYVRMADVSGRRLTALLSDILDISRIEAGKLLLTERA 728

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
             L ++   +    +    E  I + V     L    + D  RL QI   ++ NA+ F++
Sbjct: 729 FDLEEMRTSIITLFSIPAQEKGISLVVELAPDLPPRLIGDDLRLRQILFNLVGNAVKFTN 788

Query: 704 KG----STVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
           +G       +L +  DNG   +FSV+++G  I + +  ++F  FV          +G GL
Sbjct: 789 EGFVQTQISLLSSQADNGCRLLFSVQDSGEGISDTLLPAIFEPFVQGEGSYVRYHQGAGL 848

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+IV   + + GG ++I SSD   TTI   +
Sbjct: 849 GLAIVGRLMRMMGGSLAIDSSD-SGTTICFSL 879


>gi|86609856|ref|YP_478618.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558398|gb|ABD03355.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 700

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 163/399 (40%), Gaps = 35/399 (8%)

Query: 408 PRGGTIW----MFENLTVQVD-LETKYNTLVKVQGETID----HLSEGVAVFGPDGRIKL 458
           P GG +      F  +  ++   E +    +      ++     + +   +   + R+ L
Sbjct: 281 PFGGELAQLIDSFNEMAERLQSYEEQNIEELAAAKAKLETLVFSIVDAAILLDAELRVLL 340

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA   ++  E + +        +     +              I   D E + ++  L
Sbjct: 341 LNPAASRMFGWEGDPVLGKPLPELLPEDLQQQLARPLMQ------IARGDQEAEEVRVNL 394

Query: 519 ELLSDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              +  V+   + P+  P  Q +   V     +  E  L          +E K  F+ ++
Sbjct: 395 TGPTKRVIRILLSPVSDPRRQNLKGIVMTVQDITREVEL----------NEAKAQFISNI 444

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I  F + L        ++++  Y+E  +  +  L  LVND+LDL+ +++G
Sbjct: 445 SHELRTPLFSIKSFIETLYEYGEQMSSAERLDYLEIANRETDRLTRLVNDVLDLSRLESG 504

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             + ++  + +  ++ +  ++   +  +  I+++   D  L     +   LLQ+ + +L 
Sbjct: 505 K-QYHFEGVDIAAVIEQTLRTHQLQARDKGIQLRKFVDPDLPLVWGNYDLLLQVMTNLLG 563

Query: 697 NAMDFSSKGSTVILKA---ARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           NA+ F+  G  V + A    + +G       +V + G  I  +  + +F+RF    +R  
Sbjct: 564 NALKFTPSGGLVTVHAHLVVQADGSPQAVRVAVADTGIGIAPEDQERIFDRFFRVENRVH 623

Query: 751 R-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGL+IV + +  H   + + S  E  +T    +
Sbjct: 624 TLEGTGLGLAIVRNILEKHRTRICLESKLEQGSTFWFDL 662



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 58/179 (32%), Gaps = 20/179 (11%)

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
            + NF + +     G     +++   N   E   + +      +         ++ ++  
Sbjct: 270 TKGNFKQRIDLPFGGE--LAQLIDSFNEMAERLQSYEEQNIEELAAAKAKLETLVFSIVD 327

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK-- 375
           A  + D    +   N +   ++  +   +   P  +           LPE L  +  +  
Sbjct: 328 AAILLDAELRVLLLNPAASRMFGWEGDPVLGKPLPE----------LLPEDLQQQLARPL 377

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQVDLETK 428
             I    + +E  +     P  + + ++++           G +   +++T +V+L   
Sbjct: 378 MQIARGDQEAEEVRVNLTGPTKRVIRILLSPVSDPRRQNLKGIVMTVQDITREVELNEA 436


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
          Length = 1499

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 10/249 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+ L +  +A  ++  IK  F  +VS+E+R+PL  +IG  +LLK      LN KQ +YV
Sbjct: 255 REQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNM---GLNPKQREYV 311

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669
           +    S   LL L+ +ILD + +++G  KL+     L ++L++V   +A +     + + 
Sbjct: 312 QAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKELELG 371

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKN 725
            V+ D    S   D  R+ QI   +++NA+ F+ +G   + +       +     F V++
Sbjct: 372 YVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKAEKLVLHFEVRD 431

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +    VF  F        R   G GLGL+I    ++L GG + + S     + 
Sbjct: 432 TGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSGKGSI 491

Query: 784 INCRIPSKE 792
                P +E
Sbjct: 492 FWFTAPLEE 500


>gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1162

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 126/241 (52%), Gaps = 3/241 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L+ K E L ++   K+ F+ ++S+ELR+PL +++    LL+ +K  +L+SKQ  Y 
Sbjct: 481 ARQQLSLKAEELEQSSRYKSEFLANMSHELRTPLNSVLILARLLEENKDRNLSSKQVDYA 540

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S + LL L+NDILDL+ ++AG +++    + ++ ++++++Q       E +I   
Sbjct: 541 GIIHKSGSDLLKLINDILDLSKIEAGKVEMQIEPVSVSAMVSDLEQLFRVVADEKSIHFS 600

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             I+ G   +   DRQRL Q+   +LSNA  F+ K   + L+          +V +NG+ 
Sbjct: 601 TEIAAGVPATVQTDRQRLEQVIKNLLSNAFKFTPKNGNIQLRLTAAADGVYIAVSDNGTG 660

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +  + +F  F        R   G GLGLSI +  +   GG + + S +   +T    
Sbjct: 661 IPVEKQQLIFEAFRQADGSTSRKYGGTGLGLSISKELMKRLGGEIRLESKEGQGSTFTVV 720

Query: 788 I 788
           +
Sbjct: 721 L 721


>gi|218532474|ref|YP_002423290.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218524777|gb|ACK85362.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 803

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/522 (19%), Positives = 211/522 (40%), Gaps = 35/522 (6%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           G+  + +   K       +     +   L     I + +  L ++NR + +      A +
Sbjct: 8   GDITVTVQDGKVPETGPTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM 67

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIV 404
           A +              KL    + +   E   S   + E+ +DT+ L   +G+    + 
Sbjct: 68  ADH-----------GWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGRYRWFLS 116

Query: 405 TSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            + P     G  +  +    ++T     +       +     +D  +  +      G + 
Sbjct: 117 MAEPVRNAEGTVLRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELM 176

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              P++ +     +        I  I         E   W      +T F+ E + L+  
Sbjct: 177 PPQPSWAAYTGQSDEAYQGWGWIDAIHPDDRARVAE--VWAECVERVTVFEVEYR-LRRH 233

Query: 518 LELLSDSVLEYSIIPL-----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            E+  D  +E   +P+        + +   +++T    AE A+     A   A+  K+ F
Sbjct: 234 DEVWRD--MEVRGVPVLAEGGSIREWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQF 291

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+ELR+PL+ +IG++++L         ++    +  I +S+  LL L+ND+LD++ 
Sbjct: 292 LANMSHELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISK 351

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++AG + L   T  +  L+ +V  +  + + +   R ++  +G LG+   D+ +L Q   
Sbjct: 352 IEAGRLTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLRQSLI 411

Query: 693 KILSNAMDFSSKGSTVI-LKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            ++ NA  FS  G  ++ ++  R+ G     FSV + G  + ++    +F RF       
Sbjct: 412 NLIGNAAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADEST 471

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            R   G GLGL+I  +F+   GG + + S+     T   R+P
Sbjct: 472 TRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 85/249 (34%), Gaps = 23/249 (9%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK--EEIK 249
           ++ F+ L D+L  L W  +  G ++W N  +   T T                   E   
Sbjct: 26  MADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEMADHGWRKLHHPDHLERAA 85

Query: 250 KRMISSSALEKNFCETVSTL-EHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVN 302
           +R  S  A  +++ +T     + G  + +      V N+ G      G   DV++     
Sbjct: 86  ERFASCIAAGESWQDTFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNTDVTETRLAQ 145

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE------LL 356
           D L H+ +         A+ D +  + +   +  EL     ++ A    +DE       +
Sbjct: 146 DALGHSEQRFR------ALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGWGWI 199

Query: 357 EFLR--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + +      ++ E       +  +F V      H + W     + + V+         + 
Sbjct: 200 DAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEGGSIREWVG 259

Query: 415 MFENLTVQV 423
           +  ++T + 
Sbjct: 260 LNIDITARK 268


>gi|71905886|ref|YP_283473.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71845507|gb|AAZ45003.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1066

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/531 (19%), Positives = 190/531 (35%), Gaps = 57/531 (10%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDE 354
           +      D+L      +    V+I I D    +++ N  F ++        L  NP    
Sbjct: 401 AALRVQADELKVLSRAIEQSPVSIVITDTGGCIRYVNPKFEQVTGYTSQQVLGQNP---- 456

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGG 411
               L S  K P++   + W+          E H       +G       + +P     G
Sbjct: 457 --RILSSGEKSPDEY-RELWRTIKSGQTWQGEFHN---RRQDGSLFWERASISPIIDEQG 510

Query: 412 TIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            I  F    E+++    +E             +D +   + + G D   + +N     L+
Sbjct: 511 QILHFLAVKEDISEHKQIEEALRVSEYKMATILDSVEAYIYIKGTDYCYQYANRRVCELF 570

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             E N +                   +D   +        ++  +++ G +     S+  
Sbjct: 571 AREMNGIVGHQDTEFFDPATCANLRRNDRRVIEQGERVVEEEVNRTVDGQITSAFLSIK- 629

Query: 528 YSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRK------------------ 564
              IPL +             ++T   +AE  L    + L                    
Sbjct: 630 ---IPLRDQDGQIYALCGISTDITVRKQAEAELEHYRQHLETLVQSRTVELARAKDAAEA 686

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+SF+ ++S+E+R+P+  I+G T LL+      L+S+  + +  I  S+  LLN++
Sbjct: 687 ANRAKSSFLANMSHEIRTPMNAIMGLTHLLQKDV---LDSRARERLGKIGESANHLLNVI 743

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           NDILDL+ ++AG + L         +L +    +  +     +R+       + +    D
Sbjct: 744 NDILDLSKIEAGRLALEIREFSPEAVLRQTISMLDERAAAQGLRLTSHLASDVPALLCGD 803

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
             R+ Q     + NA+ FS +G  + L+A  D  D       F V++ G  +       +
Sbjct: 804 AVRIGQALLNFVGNAIKFSERGE-IALRARVDRRDGEQVMLRFEVQDQGIGMDAGQQARL 862

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F  F        R   G GLGL+I      + GG V + S+    +T    
Sbjct: 863 FQSFSQADDSTTRKYGGTGLGLAINRHLARMMGGDVGVDSALGVGSTFWMT 913


>gi|115379186|ref|ZP_01466305.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
 gi|115363806|gb|EAU62922.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
          Length = 1021

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 117/700 (16%), Positives = 241/700 (34%), Gaps = 96/700 (13%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDS----LDFLVWHRDQAG-DILWANISYKKNTETEG 230
            +  +   L   +L       +   +        +V     +G   +  N  Y++    + 
Sbjct: 315  ARHSALALDRARLLAEGETQRARLEELVMCAPAVVSVTRGSGHRYVLCNPRYRQLLGGKD 374

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK------SYKIVRVLN 284
            +    A      L  + + + M       + F      +  G          +  V    
Sbjct: 375  LTGMSAREAVPTLDGQGVFEAMDRVYETGEPFISKEFPVRLGPKSDVPSEAFFDFVHQPL 434

Query: 285  S------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
                    G A  A DV+ ++          E+L ++        + R+  F   +   +
Sbjct: 435  RDSEGRVEGIATFAFDVTDQVLARR---TVEELLRDMA-----RSEERFRAFLTATSEII 486

Query: 339  WEIDL--AFLATNPSNDELLEFLRSANKLP------EQLNWKTWKENIFSVYKSSETHKD 390
            W++     F +  P         R               +    +       K+ +  ++
Sbjct: 487  WDMPPRGGFDSDQPGWRAFTGQTREELLGWGWLNAVHPEDRLGTELAWREAVKAGKLFQN 546

Query: 391  TWHLP--NGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLETKYNTLV---KVQGE 438
               L   +G   H+ + + P     G     + +  ++T Q + E +   L+   +    
Sbjct: 547  EVRLRRHDGMYRHMHMRAVPVLELDGTVREWVGIHRDITRQREDEVERARLLSREQRHRA 606

Query: 439  TIDHLSEGVAVFGP----DGRIKLSNPAFRSLWKTEEN-----------RLSPGTHIRNI 483
             +  L+      G     D  + +     R L    ++           +      +   
Sbjct: 607  QLQGLAAASLAIGQAASLDAVLLVITEEARELIGAHQSVTSLTTGEDGAQSISAVSLSEK 666

Query: 484  AATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLELLSDSVLE--------YSIIP 532
             +    Y   +DGW   A +  +    R +   L+   E  S    E        +  +P
Sbjct: 667  YSQYRGYSPRADGWGFSAQVCRTNQPLRMAQPELEAHPEWRSIGQSEAEHPPPRGWLAVP 726

Query: 533  L--------------PNAQTMLTFVNVTDSVRAERALTEKNEALRKA------DEIKNSF 572
            L                 +   T  +    V+  R  +   E  R        +  K+ F
Sbjct: 727  LVGSSGSNLGLIQLSDRHEGDFTAEDEAILVQLARMASVAIENARLMAESQAANRAKDEF 786

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            +  +S+ELR+PLT ++G+T +L+T +     + Q + ++ I  ++  L  L+ D+LD++ 
Sbjct: 787  LAVMSHELRTPLTAVLGWTQMLRTRRNDP--AIQEKGLDVIERNARSLAQLIEDVLDVSR 844

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            +  G + L+   + L  ++    + +  +  +  + + + +    G    D  RL Q+F 
Sbjct: 845  ILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTLVMEAGVGGGMVTGDPGRLQQVFW 904

Query: 693  KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
             +L NA+ F+  G  V ++  R N ++   +K++G  I  +    +F RF        R 
Sbjct: 905  NLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALPHLFERFWQADGSSTRE 964

Query: 752  -RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
              G+GLGL+IV   + LHGG V   S+     +T   R+P
Sbjct: 965  HGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 1004


>gi|254563550|ref|YP_003070645.1| hybrid histidine kinase [Methylobacterium extorquens DM4]
 gi|254270828|emb|CAX26833.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens DM4]
          Length = 803

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/517 (18%), Positives = 200/517 (38%), Gaps = 25/517 (4%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           G+  + +   K       +     +   L     I + +  L ++NR + +      A +
Sbjct: 8   GDITVTVQDGKVPETGPTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM 67

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIV 404
           A +              KL    + +   E   S   + E+ +DT+ L   +G+    + 
Sbjct: 68  ADH-----------GWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGRYRWFLS 116

Query: 405 TSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            + P     G  +  +    ++T     +       +     +D  +  +      G + 
Sbjct: 117 MAEPVRNAEGTVLRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELM 176

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              P++ +     +        I  I         E     +    +   +   +     
Sbjct: 177 PPQPSWAAYTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEV 236

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              +    +          + +   +++T    AE A+     A   A+  K+ F+ ++S
Sbjct: 237 WRDMEVRGVPVLAEDGSIREWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMS 296

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL+ +IG++++L         ++    +  I +S+  LL L+ND+LD++ ++AG 
Sbjct: 297 HELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGR 356

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + L   T  +  L+ +V  +  + + +   R ++  +G LG+   D+ +L Q    ++ N
Sbjct: 357 LTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLRQSLINLIGN 416

Query: 698 AMDFSSKGSTVI-LKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           A  FS  G  ++ ++  R+ G     FSV + G  + ++    +F RF        R   
Sbjct: 417 AAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFG 476

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+I  +F+   GG + + S+     T   R+P
Sbjct: 477 GTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 85/249 (34%), Gaps = 23/249 (9%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK--EEIK 249
           ++ F+ L D+L  L W  +  G ++W N  +   T T                   E   
Sbjct: 26  MADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEMADHGWRKLHHPDHLERAA 85

Query: 250 KRMISSSALEKNFCETVSTL-EHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVN 302
           +R  S  A  +++ +T     + G  + +      V N+ G      G   DV++     
Sbjct: 86  ERFASCIAAGESWQDTFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNTDVTETRLAQ 145

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE------LL 356
           D L H+ +         A+ D +  + +   +  EL     ++ A    +DE       +
Sbjct: 146 DALGHSEQRFR------ALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGWGWI 199

Query: 357 EFLR--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + +      ++ E       +  +F V      H + W     + + V+         + 
Sbjct: 200 DAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSIREWVG 259

Query: 415 MFENLTVQV 423
           +  ++T + 
Sbjct: 260 LNIDITARK 268


>gi|15837455|ref|NP_298143.1| two-component system, sensor protein [Xylella fastidiosa 9a5c]
 gi|9105761|gb|AAF83663.1|AE003925_3 two-component system, sensor protein [Xylella fastidiosa 9a5c]
          Length = 499

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/468 (20%), Positives = 184/468 (39%), Gaps = 44/468 (9%)

Query: 351 SNDELLEFLRSANKLPE------QLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVI 403
           +N      LR  + + E        +   W +    V  S +  H +   L    ++ V+
Sbjct: 18  TNASFGRHLRLGSVVGESLCDIMPDDGPQWIKRYGGVALSGQRVHFEARALCRWYSVEVM 77

Query: 404 VTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               P G  +  +F ++T +  +E +            D L   V VF   G ++  N A
Sbjct: 78  RVGAPEGRLLGVLFMDVTERKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTA 137

Query: 463 FRSLWKTE-----ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +   +  +         S   H  ++     +          F A++ +     +   G 
Sbjct: 138 YGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAALKTQSAFRALVRA-----RRYDG- 191

Query: 518 LELLSDSVLEYSIIPL--PNAQTMLTFVNVTD-SVRAERAL---------TEKNEALRKA 565
                   +E S  P   P+   +    +  D + R E  L                   
Sbjct: 192 ----QWRWIEMSATPRYSPDGHFIGLTGSSPDVTERLEIELAREQLLKSERAARNEAENM 247

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNL 623
             +K+ F+  +S+ELR+PLT I+G+++LL       ++ +   Y  +  I++S+ +   L
Sbjct: 248 ARLKDEFLSTLSHELRTPLTTILGWSELLLQR----IDEQHPCYKGLSVIASSAKVQKRL 303

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LDL+++  G M+L    + L + + EV       +     R+ + +       + D
Sbjct: 304 ISDMLDLSSMLLGKMQLKMEVLDLVEQIREVIGLYEPVVDSKGQRLLLRASEMPCLVLGD 363

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QIF  +LSNA+ F+     + ++   D   F  SV ++G  I  +    +F+RF 
Sbjct: 364 ATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAEFLPHLFSRFR 423

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
                  R   G+GLGL+IV+S + +HGG+V  +S            +
Sbjct: 424 QADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGIGKGAMFTVSL 471



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 86/244 (35%), Gaps = 31/244 (12%)

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G     N S+ ++     +     +GES      +   + I          + V     
Sbjct: 12  DGIFRLTNASFGRH-----LRLGSVVGESLCDIMPDDGPQWIKRYGGVALSGQRVHFEAR 66

Query: 272 GNNKSY--KIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD 323
              + Y  +++RV    G     + +DV++   +  +L  +    + L   +     +FD
Sbjct: 67  ALCRWYSVEVMRVGAPEGRLLGVLFMDVTERKRMERRLAESEVRFNILADGLPMPVWVFD 126

Query: 324 QNRYLQFHNRSFVELWEIDLA-------FLATNPSNDELLEF-LRSANKLPEQLNWKTWK 375
               ++F N ++ E + +DL+        +  +P +  + EF L +A K           
Sbjct: 127 AQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAALKTQSAFRALVRA 186

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                 ++  E      + P+G  + +  +S           ++T ++++E     L+K 
Sbjct: 187 RRYDGQWRWIEMSATPRYSPDGHFIGLTGSSP----------DVTERLEIELAREQLLKS 236

Query: 436 QGET 439
           +   
Sbjct: 237 ERAA 240



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++ E     ++L+     F +L D L   VW  D  G + + N +Y +      +     
Sbjct: 93  DVTERKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTAYGEFFGV-DLSSGTV 151

Query: 237 IGESRKLFKEEI---KKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVL------NSF 286
              S  L  E++   + ++ ++   +  F   V      G  +  ++          +  
Sbjct: 152 PEWSMVLHPEDVLIFEFKLSAALKTQSAFRALVRARRYDGQWRWIEMSATPRYSPDGHFI 211

Query: 287 GEAGIAIDVSKEITVNDQLTHTYE 310
           G  G + DV++ + +        +
Sbjct: 212 GLTGSSPDVTERLEIELAREQLLK 235


>gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 1014

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  +   +A   K+ F+ ++S+E+R+P+  +IG T+LL  S    L  +Q Q  + 
Sbjct: 343 QELQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDS---PLAEEQRQIADT 399

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++ S   LL ++NDILD + ++AG ++L      +  ++ E     A K     + + V 
Sbjct: 400 VAESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLELVVD 459

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA---ARDNGDFIFSVKNNG 727
            +D      + D  RL Q+   +LSNA+ F+ +G   V L+A      +   + S++++G
Sbjct: 460 MADDVPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTLRAHHITEQSATIVVSIRDSG 519

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I       +F  F        R   G GLGLSI +  I   GG + + S     +   
Sbjct: 520 IGIEPQHIPQLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQIHVFSQPGQGSNFW 579

Query: 786 CR 787
             
Sbjct: 580 FE 581


>gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
 gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
          Length = 1053

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/425 (24%), Positives = 179/425 (42%), Gaps = 64/425 (15%)

Query: 424 DLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           +L  +   L  +QG     ID ++E + + GPDGR+  +N             L  G   
Sbjct: 199 ELRHRSRQLAMLQGTVDRAIDTMAEIIVMLGPDGRVTRTNRLLEIELGYTAESLVGGYFE 258

Query: 481 R---------------------------------NIAATCSRYYNESDGWDLFAAII--- 504
                                              +A    R  + +   DL   +    
Sbjct: 259 DCLPLAGQNALRALLPAGAKPPLLLNAIRAAGGHFVAELNFRRADAASEHDLEGTVPYLV 318

Query: 505 --TSFDDERKSLQGTLELLSD-SVLEYSIIPLPN--------AQTMLTFVNVTDSVRAE- 552
             +    +   L+G + + ++ SVL+     L N        A+ +    +   ++  E 
Sbjct: 319 HASLIHSQAGKLEGAIVISTNISVLKAREKALRNNERQLHETAEELRNHRDNLAAMVEEQ 378

Query: 553 -RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            R L +  E   +A   K+ F+ ++S+E+R+PL  I+G +DL   +    LN +Q+Q++ 
Sbjct: 379 TRDLRQAKEQAEEASRAKSEFLSNMSHEVRTPLNAILGLSDLCLQT---PLNPQQNQHLS 435

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++  LL ++NDILD + ++AG + +      L  LL E+   +  ++ E N+ + V
Sbjct: 436 KIRLAADHLLGIINDILDFSRIEAGKLSIEKLIFELPSLLEEISDLLIGRIEEKNLELCV 495

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKN 725
               +   SFV D  RL Q+   +L NA+ FS +GS V L    D+ D       FSV +
Sbjct: 496 DIAAEASRSFVGDPLRLKQVIINLLGNAIKFSDQGS-VRLGCRIDSTDHNSTSLHFSVSD 554

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E+   ++F+ F        RR  G GLGL I +  + L GG + + S+    +T
Sbjct: 555 EGIGISEEQQNALFSAFSQADTSTTRRFGGSGLGLVISKRLVELMGGRIWLESTPGNGST 614

Query: 784 INCRI 788
            +  I
Sbjct: 615 FHFTI 619


>gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 521

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 2/237 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E N  L +A   K+ F+  +S+ELR+PLT+II FT+LL       L  +Q + +  
Sbjct: 283 RELEEANRELERASRYKSEFLTMISHELRTPLTSIIAFTELLLNDPR--LAPEQRESLSE 340

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  SS  LL ++ ++LD + ++AG +KL    + L DL+ +  ++I     +  I + + 
Sbjct: 341 VLESSQKLLGMITNLLDYSRLEAGKVKLFREVLDLRDLIRDGVRTIQPLAAKKRIMLSMD 400

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              ++    AD  R+ Q+   +LSNA+ F+ +G  V ++   D  +   +V++ G  +PE
Sbjct: 401 CAPEVPLVHADPLRISQVLLNLLSNAVKFTPEGGRVAVECRADQREVRVTVRDTGPGVPE 460

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F  F     +G+  G GLGL++  S +  H G + + S           +P
Sbjct: 461 EEQELIFQPFRQGREKGRPEGWGLGLALSASLVRAHDGRIWVESEPGHGAAFTFTLP 517


>gi|320162521|ref|YP_004175746.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319996375|dbj|BAJ65146.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1314

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 153/371 (41%), Gaps = 24/371 (6%)

Query: 424  DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +   +     +     +D   EG+ V  P G     NPAF S+       L  G+  R +
Sbjct: 957  ERTAQLRAEKERTQAVLDAAGEGIFVLDPQGAFLYCNPAFESITGYSLVELQVGSPWRWL 1016

Query: 484  AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                   +      ++ +   T ++ E    +       D++L  + +   +   +    
Sbjct: 1017 DENEGNLFKTYQNREILS---TRWEKEIHGWRRNGAPF-DAILTLTPVHDEDGNVIKHVG 1072

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
             + D  R           L++ D +K+ FV +VS+ELR+PLT+I  + + L T+      
Sbjct: 1073 TLQDITR-----------LKELDRLKSQFVSNVSHELRTPLTSIKLYAEQLPTASA---- 1117

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             + ++Y+  +   +  L  +V D+L ++ +D G  ++  S + L   + ++ +      H
Sbjct: 1118 ERSARYLAALQRETARLEAMVEDLLTISRLDLGKTRIQISALPLAPFVQQIVEDRRMLAH 1177

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FI 720
               + +    D  L     D + ++QI + +L+NA++++  G  + +    D  +     
Sbjct: 1178 SRGLTLHFQQDKHLPPVAGDERFVMQIVTNLLTNAINYTPAGRNIFISVRHDPQEAGFLR 1237

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSD 778
             ++++ G  IP +    +F RF   +     Q  G GLGL+IV+  +    G + I S  
Sbjct: 1238 LTIEDEGVGIPPEEMPHLFERFFRGSAGRKLQVPGTGLGLAIVKEMVERLNGKIHIESEV 1297

Query: 779  EGVTTINCRIP 789
               T     +P
Sbjct: 1298 GKGTKAIVWLP 1308



 Score = 41.1 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 19/140 (13%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +   +  +   T  +L      I + D      + N +F  +    L  L        L
Sbjct: 957  ERTAQLRAEKERTQAVLDAAGEGIFVLDPQGAFLYCNPAFESITGYSLVELQVGSPWRWL 1016

Query: 356  LEFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RG 410
             E         E   +KT++   I S     E H   W   NG     I+T  P     G
Sbjct: 1017 DEN--------EGNLFKTYQNREILSTRWEKEIH--GWRR-NGAPFDAILTLTPVHDEDG 1065

Query: 411  GTI---WMFENLTVQVDLET 427
              I      +++T   +L+ 
Sbjct: 1066 NVIKHVGTLQDITRLKELDR 1085


>gi|254423945|ref|ZP_05037663.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196191434|gb|EDX86398.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 935

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           + E   LQ   E L+ ++ + S+      Q +     V +  +   +L +   A   AD 
Sbjct: 514 ETETVFLQHIAEHLAVAIEQASLYEQLQQQKVSLESCVIERTQ---SLRDALSAATAADR 570

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K  F+  +S+ELR+PLT IIG +  L     G L+ +Q  Y+E I+ S   LL ++NDI
Sbjct: 571 TKVEFLSTMSHELRTPLTYIIGMSATLLRWSFGELSERQRSYLETINRSGEHLLTVINDI 630

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS--DGKLGSFVADRQ 685
           L+ A V++G   LN S   L++L+  V          +++ + V      ++ +F AD +
Sbjct: 631 LEFAKVESGRSLLNVSNFPLSNLVRSVATRYQEDAKNHDVSLSVDCVLSPEVENFRADSK 690

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ QI S +++NA+ F+  G  + L+  ++    +  V++ G  IPE   K +F +F   
Sbjct: 691 RIEQILSNLVNNAIKFTPAGGEITLRVQKELDSILLQVEDTGIGIPESQQKFMFEKFKQL 750

Query: 746 AH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               + Q  G GLGL++ +  + LH G + + S+    +T    +P +
Sbjct: 751 ESPFQRQYAGTGLGLAMTKHLVELHNGTIQVISTVGKGSTFIVSLPIQ 798


>gi|332798940|ref|YP_004460439.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332696675|gb|AEE91132.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 581

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 157/358 (43%), Gaps = 28/358 (7%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              +  ++EG+     +  I + N A   L+K +++          +           + 
Sbjct: 247 EAVLSSMAEGLIAVDHNCHIVMMNSAAEKLFKIKKDEF--------LGRHLLEMLRNKEL 298

Query: 497 WDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           +DL   ++T+     K+L   L++++  + +   +I P+   +     + + D       
Sbjct: 299 YDLVNTVLTT----SKNLSQELKIITSTEKIFYINISPINKIENSGAVIILRDIT----- 349

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                  LRK ++++  FV ++S+EL++PLT+I GF + L      S +     ++  I 
Sbjct: 350 ------DLRKLEKVRTEFVANISHELKTPLTSIAGFVETLLDGAYKSQDH-CKYFLGIIK 402

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  +  L+N++L  + ++    ++    + + +++ +    + T ++E   ++ +   
Sbjct: 403 QETDRMTRLINELLYFSHIEKNGTEIIKKPVDMIEVIMKALSILQTAINEKKHKVNLKLP 462

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +   +++   LLQI   +L NA+ ++ +G T+ +       + + +V +NG  I ED 
Sbjct: 463 ENIAHILSNEDSLLQIMINLLDNAIKYTPEGGTISIMVEETLENVLITVADNGIGIAEDE 522

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F RF        G+  G GLGL++V+  +    G + + S  E  T+    IP 
Sbjct: 523 LDRIFERFYRVDRARSGEIGGTGLGLAMVKHLVKGLEGWIKVESELEKGTSFTVYIPK 580



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + D    T  +L ++   +   D N ++   N +  +L++I             LLE L
Sbjct: 238 DLKDGRDKTEAVLSSMAEGLIAVDHNCHIVMMNSAAEKLFKIKKDEFLGRH----LLEML 293

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R+           T  +N+    K   + +  +++ N   ++ I  S    G + +  ++
Sbjct: 294 RNKELYDLVNTVLTTSKNLSQELKIITSTEKIFYI-NISPINKIENS----GAVIILRDI 348

Query: 420 TVQVDLET 427
           T    LE 
Sbjct: 349 TDLRKLEK 356


>gi|313205098|ref|YP_004043755.1| pas/pac sensor hybrid histidine kinase [Paludibacter
           propionicigenes WB4]
 gi|312444414|gb|ADQ80770.1| PAS/PAC sensor hybrid histidine kinase [Paludibacter
           propionicigenes WB4]
          Length = 912

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 161/396 (40%), Gaps = 30/396 (7%)

Query: 420 TVQVDLET---KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----- 471
           T   +LE          +     I+   + +     +G+I   N A   +          
Sbjct: 238 TAAKELEAFSYSLKLASQYSRSLIEASRDPLFTINLEGKITDLNNASVKITGMSREEIIG 297

Query: 472 -NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-----------FDDERKSLQGTLE 519
            +     T            +      D    I              + D+R ++QG + 
Sbjct: 298 TDFFDYFTEPDKAKEVYKDVFANGFVTDFPLTIRDGKLTDVLFNGSVYKDDRGNVQGVVV 357

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +  D   +  I    N   +   +    +  A+       +    A + K  F+ ++S+E
Sbjct: 358 VARDITDQKKIETQLNEAIVFAEMATEIAEIAKTKAESSTQIAETAVKAKQQFLSNMSHE 417

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  I+GFT +L  S+   L +KQ +Y+  I  S   L+ L+NDILDLA VDAG M 
Sbjct: 418 IRTPMNAIVGFTKVLLKSE---LTAKQKEYLSAIKMSGDALIVLINDILDLAKVDAGKMV 474

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNA 698
                  +   ++ +     TK+ E N+++ V  D  +    V D  RL QI   ++SNA
Sbjct: 475 FEKIPFKMELSISAMLHLFETKILEKNLKLVVDYDKTIPDVLVGDPVRLHQIILNLMSNA 534

Query: 699 MDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           + F+ KG   V ++   +N D     FS+K+ G  I E+    +F  F   +    R   
Sbjct: 535 VKFTGKGKIYVSVRLLSNNDDSASVQFSIKDTGIGISEEKIGKIFENFQQASSGTSRLYG 594

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+IV+  +   GG + ++S     +T +  +
Sbjct: 595 GTGLGLAIVKQLVESQGGSIHVTSEINEGSTFSFTL 630


>gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1118

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 162/375 (43%), Gaps = 16/375 (4%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L   +      +    +     +A+ G D R K  N A+  ++   E  L       ++
Sbjct: 282 SLSRAFIVAQAERDRYFNQSLNFLAISGFDNRFKRVNTAWTKVFGYSEEELLS-KPFMDL 340

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             + SR    ++   L      SF+ + +   G+   +  ++     +     +   +  
Sbjct: 341 VFSGSRADTAAELDKLVMGSNVSFESQMRCKDGSFRWVLWNIAAAQDV----REFYFSGQ 396

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     ER L    +A   A+  K+ F+ ++S+E+R+P+  ++G   LL  +   +L 
Sbjct: 397 DITARKNIERELQNARKAAEAANRAKSEFLANMSHEIRTPMNGVLGAVGLLLNT---TLT 453

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK-M 662
             Q +      AS   LL ++NDILD + ++AG + ++     L   + EV   +A +  
Sbjct: 454 PSQRELAGLARASGETLLCIINDILDFSKIEAGKLVISPVPFDLLQAVEEVAGMVAMQPA 513

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNG 717
            + N+ + V     +  +V  D  R+ Q+   + +NA+ F+ KG   + ++A     D  
Sbjct: 514 RKANVNVIVRYLPNVPRYVFGDLGRIRQVLINLTNNAIKFTDKGHVLIDVEAEALSEDEV 573

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               SV+++G  I  D  +S+F++F        RR  G GLGL+I +  + L GG ++  
Sbjct: 574 SLRISVEDSGLGIAPDKLQSIFDKFTQADASTTRRYGGTGLGLAISKQLVQLMGGTIAAK 633

Query: 776 SSDEGVTTINCRIPS 790
           S     +T    +P 
Sbjct: 634 SRVGAGSTFWFTLPL 648


>gi|298490004|ref|YP_003720181.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298231922|gb|ADI63058.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 640

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 6/334 (1%)

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
              +  EE  L+     +  A   +    E   W L  A   +   E    + +L     
Sbjct: 305 EKTYPLEECLLNFLRRSKVHAKLVAPIIFEEKLWGLLIAHQCNAPREWTESEKSLLTSVT 364

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--DEIKNSFVQHVSYELR 581
             L  +I       ++       +    ER +  +   L     + +++ F+  +S+EL 
Sbjct: 365 KQLAITIHQTELMASLTKQKQTLEQRVIERTMALQEALLAAEAANRLRSEFLATISHELL 424

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT +IG +  L    LG L+ +Q  Y++ I  S   LL ++NDILDL+ V+AG   LN
Sbjct: 425 TPLTYVIGMSSTLLLWPLGELSKRQRDYLQTIHDSGEHLLEMINDILDLSQVEAGRTVLN 484

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAM 699
            +   L         S+  K     + +K+    +    SF  D  R+ QI   +L+NA+
Sbjct: 485 ITDFSLVKSAQNTLDSLLEKARSEKVTLKLDLQINPSHDSFTGDSTRVEQILWNLLTNAI 544

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
            F+ +G  V L+   ++   IF V++ G  IPE+    +F +F       R +  G G+G
Sbjct: 545 KFTPEGGNVTLRLWVEDATAIFQVEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGVG 604

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L++ +  + LH G + + S+    +     IP++
Sbjct: 605 LALTKQLVELHRGRIEVESTVGIGSIFTVWIPNQ 638


>gi|323699230|ref|ZP_08111142.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459162|gb|EGB15027.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 643

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 110/558 (19%), Positives = 200/558 (35%), Gaps = 82/558 (14%)

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            ++   I I+     + F +  F         F    P   E     R+      +   K
Sbjct: 90  DDMVQGIRIYGSRNEVVFAHEKFS---GTPADFSQVRPIVFEGRTIGRAEIDFTLEREKK 146

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----------------NPRGGTIWM 415
              E +F                 G  L V +                   +   G ++ 
Sbjct: 147 RLDEQMFVSIIIIVVSISVILAITGLLLRVFLNKPLMVLQSGIARVAKGDFSYDFGEVYH 206

Query: 416 ---------FENLTVQVD--------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
                    F  ++++++        +        +      ++  EG+    PDG ++ 
Sbjct: 207 AELLEIAKRFRRMSIEIEGRENKLQTMNKTLQEAEEKYRSIFENAIEGIFQATPDGVLRR 266

Query: 459 SNPAFRSLWKT--------------------EENRLSPGTHIRN---IAATCSRYYNESD 495
           +NPA   ++                       ++       +R+   +    + YY    
Sbjct: 267 ANPAMARIFGYDSLDEFLSNVRSLSSRIMVNPDHMQGFFDRVRDQGEVKRFEAEYYRRDG 326

Query: 496 GWDLFAAIITSFDDERKS---LQGTLELLSDSVL-EYSIIPLPNAQTMLTFVNVTDSVRA 551
                +    +  DER +   + G LE ++D    E  +  L      L      D V  
Sbjct: 327 KTIWGSLNARAIHDERGNFVFVDGILEDITDRKKAEQDLADLNRHLEQLVRERTEDLVNK 386

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------------TSK 598
            R L E N+ LR+ DE+K++F+  VS+ELR+PLT+I+GF  LL                 
Sbjct: 387 ARELEEANQRLRELDEMKSAFLSSVSHELRTPLTSILGFAKLLNKEFTRNFLPLVSPEGA 446

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L     +  + +  IS     L  L+ND+LDL  +++G M      + +N+++     S+
Sbjct: 447 LARKGKRIRENLAIISHEGERLTRLINDVLDLNKIESGSMGWRDEELDMNEVIEVAASSV 506

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           +    +  + ++      L   VADR R+ Q+   +L+NA  F+ KGS V L+A      
Sbjct: 507 SGMFAQTTLELRTEIQPGLPHIVADRDRMQQVLINLLNNASKFTEKGS-VTLRAFPRFSQ 565

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHGGHVSI 774
               V + G+ I  +    +F +F             +G GLGL+I    I  +GG + +
Sbjct: 566 LRVEVVDTGTGIHPEDQSQIFEKFHQTHTDDTMVNKPKGTGLGLTICREIIEHYGGRIWV 625

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     +T    +P+ +
Sbjct: 626 ESEVGVGSTFIFTLPAMQ 643



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 70/193 (36%), Gaps = 20/193 (10%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +   T+ +       I  N    I     +  L+  N +   ++  D        S DE 
Sbjct: 232 TMNKTLQEAEEKYRSIFENAIEGIFQATPDGVLRRANPAMARIFGYD--------SLDEF 283

Query: 356 LEFLR--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----R 409
           L  +R  S+  +    + + + + +    +      + ++  +G+T+   + +      R
Sbjct: 284 LSNVRSLSSRIMVNPDHMQGFFDRVRDQGEVKRFEAE-YYRRDGKTIWGSLNARAIHDER 342

Query: 410 GGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G  ++   + E++T +   E     L +   + +   +E +        ++ +N   R L
Sbjct: 343 GNFVFVDGILEDITDRKKAEQDLADLNRHLEQLVRERTEDLV--NKARELEEANQRLREL 400

Query: 467 WKTEENRLSPGTH 479
            + +   LS  +H
Sbjct: 401 DEMKSAFLSSVSH 413


>gi|34557246|ref|NP_907061.1| sensory transduction histidine kinase [Wolinella succinogenes DSM
            1740]
 gi|34482962|emb|CAE09961.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Wolinella succinogenes]
          Length = 1555

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/444 (21%), Positives = 178/444 (40%), Gaps = 22/444 (4%)

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI-- 413
             + L  +N+ P +  W  + + +F       TH D   + N ++L       P+G +I  
Sbjct: 640  CDILSFSNQTPAREEWLLFSDPLFQDPNVFITHADHPFITNPKSLEGKTIVLPKGTSIEE 699

Query: 414  WMFEN------LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            W+  +      + V+ + E     L +    +I  L+        +G   L     +   
Sbjct: 700  WVRRDYPWLKLILVETEEEVFKALLERKADLSIRSLTVAAYTIKKEGLFSL-----KIAG 754

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
            +  E        I+          N+         I    +   K +   ++   D  L 
Sbjct: 755  QLPEKDNHFRMGIKPKEPILRDILNQGIHTLTPEEIDRIAN---KFVSVNIQKGFDYSLL 811

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            + I+       +  F          +AL    E    A + K++F+ ++S+E+R+P+  I
Sbjct: 812  WKILIGMAGIFVGFFYWNRKLTEYNKALQAAKEKAEAATQEKSNFLANMSHEIRTPMNAI 871

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            IG T L + + L  L   Q  Y++ I  S+  LL L+NDILD + ++AG +++      L
Sbjct: 872  IGMTYLAQQTDLTPL---QRDYLQKIEGSANALLGLINDILDFSKIEAGKLEIECIDFDL 928

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            + ++  V   +  K  E N+   V  D G   +   D  RL QI + + +NA+ F+ +G 
Sbjct: 929  HSVIEHVSTLVELKATEKNLEFVVSYDQGMNMNLHGDPLRLGQILTNLANNAIKFTHEGE 988

Query: 707  TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
              I    ++   + F V++ G  +     + +F  F        R   G GLGL+I +  
Sbjct: 989  VGIYITKQELHRYRFEVRDTGIGLSPGQKEKLFRSFSQADTSTTRQYGGTGLGLAISKQL 1048

Query: 765  INLHGGHVSISSSDEGVTTINCRI 788
            + +  G + + S +   ++    I
Sbjct: 1049 VEMMNGRIWVESEEGKGSSFIFEI 1072


>gi|239628811|ref|ZP_04671842.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239518957|gb|EEQ58823.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 984

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/672 (15%), Positives = 233/672 (34%), Gaps = 46/672 (6%)

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +G        + +  +     E        + ++    +      ++       D+    
Sbjct: 45  DGYRVAYTTMVDVTEMMLAQKEQMRAQQNYETMTREQEMLMSAL-NVSVSSHLVDEHFTC 103

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFK-------EEIKKRMISSSALEKNFCETVST 268
           +WAN  Y +        ++         +        + + +++ S     ++  E +  
Sbjct: 104 IWANEFYYRLIGYPKPKYESLFHNHADEYYANNPEGWDLLTRKVTSVLEKGEDKYEMIVP 163

Query: 269 L--EHGNNKSYKIVRVLNSFGEAGIAI------DVSKEITVNDQLTHTYEILHNLTVAIA 320
           +  E G++   K+V         G         DV++ +   ++L      +  ++V+  
Sbjct: 164 MKYEDGSSYWVKLVSFFTDEYVDGYRTSYTVMTDVTELVQTKNELEMMMRAMK-VSVSKH 222

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
             D++  + + N  + +L         T P  +           +     W      I +
Sbjct: 223 KVDEHFSVVWANDFYYQLIGY------TKPEYEARFHNHCDEYFMDNLETWDILCNKIDN 276

Query: 381 VYKSSETHKDTWH---LPNGQTLHVIV----TSNPRGGTIWMFE---NLTVQVDLETKYN 430
           +  + E   +T+    LP+G +  V +    T+  + G    +    ++T  +  +   +
Sbjct: 277 MSAAGEDSFETYLPLKLPDGSSRWVKLVDFFTNEYQDGIQMAYTTMIDVTELLQAQQDKS 336

Query: 431 TLVKVQGETI---DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
              +     I     L + + +     RIK             +         R +    
Sbjct: 337 VAYEHVPGFIVKYRVLPDRLIMIDASSRIKDFFDVDLEHLADTDFMGVLQPESRQVIEAL 396

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE---YSIIPLPNAQTMLTFVN 544
                  +  +L  +I       R           D++ +   Y ++ +           
Sbjct: 397 LPELRRREALELDESIRVKDKHGRDCWLQLHGTCIDAIADDPVYLVVFIDITDITELRKL 456

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                     L    EA + A+  K+ F+  +S+++R+P+  I G T++           
Sbjct: 457 QHQLEERTEMLNTALEAAKLANAAKSEFLSRMSHDIRTPMNVIAGMTEI--ADAHLQDPE 514

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +    +  I  SS  LL L+ND+LD++ +++G + ++ + + L DL+ E+       +  
Sbjct: 515 RVKDCLHKIRLSSHHLLGLINDVLDMSQIESGKVSIHMAPLSLPDLVREIIMITLPNVRA 574

Query: 665 NNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIF 721
              + KV   + +   F +D  RL QI   +LSNA  F+ +   ++ +  +   +    F
Sbjct: 575 KRQKFKVHLMNVRQEHFYSDELRLRQILLNLLSNASKFTPENGQIVFEVEQLENNAALSF 634

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  I ED  + +F  F            G GLGL+IV+    L  G + + S   
Sbjct: 635 TVSDTGPGIKEDFQEHIFETFARERDSRTDRIEGSGLGLAIVKRLTELMDGDIILGSLPG 694

Query: 780 GVTTINCRIPSK 791
             TT    +P +
Sbjct: 695 QGTTFRVTLPMQ 706


>gi|227529844|ref|ZP_03959893.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350328|gb|EEJ40619.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 622

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 163/416 (39%), Gaps = 31/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   ++  +     + 
Sbjct: 210 EEMRKQTLRIARGDFSGQVRVMGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLDSVLS 269

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N     L   E +    G  I ++      Y           
Sbjct: 270 HMSDGVLATDRRGNVTIVNNMALQLLGVEHDDELIGKSIIDVLDIRHDYTVRQLVNSEQK 329

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +I    +   +L          +L     P+      ++ +         +        
Sbjct: 330 EMILDMSNSGSNL----------ILNAYFSPIQRESGFVSGLVCVLHDVTSQQ------- 372

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K ++ +  FV +VS+ELR+PLT++  + + L             Q+++ +   +  ++
Sbjct: 373 --KEEQERKEFVSNVSHELRTPLTSVKSYVEALSDGAWQD-KEIAPQFLKVVQDETERMI 429

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI------RIKVISDG 675
            ++ND+L L+ +DAG  KLN   + +N+L N +       + +          I+     
Sbjct: 430 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILNRFDMIIKKEEDPKKKKYTIERFFTK 489

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP    
Sbjct: 490 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITARLLETHNHVIMSISDQGLGIPRKDL 549

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A   ++ G GLGL+I +  +N+ GG + + S +   +T    +P
Sbjct: 550 SHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNMLGGQIWVDSVEGKGSTFYISLP 605


>gi|94264256|ref|ZP_01288050.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455301|gb|EAT05508.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 26/267 (9%)

Query: 548 SVRAERALTEKNEALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             R E  L E N  L +A              +  K+ F+ ++S+E+R+P+  +IG   L
Sbjct: 136 RFRLEMELMESNRRLGEAAVRAEELAREAQSANIAKSEFLANMSHEIRTPMNGVIGMASL 195

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L       L+ +Q  Y + I +S   LL L+N ILD + ++AG ++L+       +L+ E
Sbjct: 196 LLAE---DLSDEQRSYAQIIISSGQALLELINQILDFSKIEAGRLELDCRPFSPRELVQE 252

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----- 707
           V   +  +    NI +       + + V  D  RL Q+   ++ NA+ F+  G       
Sbjct: 253 VAVLLQPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELS 312

Query: 708 -VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
                 A  +    F+VK++G  IP +    +F RF         +  G GLGL+I    
Sbjct: 313 PAPADPAAPHCSLHFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRL 372

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + L GG + + S +   +T    +P +
Sbjct: 373 MELMGGEIGVESEEGKGSTFWFTVPLR 399


>gi|254708265|ref|ZP_05170093.1| sensory box histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261315765|ref|ZP_05954962.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M163/99/10]
 gi|261304791|gb|EEY08288.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M163/99/10]
          Length = 1035

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 259/728 (35%), Gaps = 56/728 (7%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSF 141
            ++W  +     +  +L   + +   D + L F  +  ++        +        G   
Sbjct: 335  LLWPVEGTRLRVPVELA-ALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQ 393

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +           +   R+ G    L +        E+A        L           D 
Sbjct: 394  N---RKPRKEPAE-TARMVGEDDVLALSE------EVANDDQPAAVLPKPP------LDI 437

Query: 202  LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
                   RD    I   N   ++    +   F K    + +      K    +   + + 
Sbjct: 438  TPTPG-RRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAER 496

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTVAI 319
              +                    S   +   ++ +  +    +     E   L NL V +
Sbjct: 497  LRKQGLANTRAE------SETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPV 550

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             I   +  + + N++ +++   +   L    S   + + L ++     +        +  
Sbjct: 551  IIHSGDA-IHYVNQALLDITGYES--LDDIRSAGGV-DVLFNSESDDGETRQSMVLRHAD 606

Query: 380  SVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
               +  + H +      G+ L      V     P    +    +     + +      V+
Sbjct: 607  GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAND-----EEKQALEAHVE 661

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +D  ++GV +  P+GRI+  N +  +L+   E   + G     + A  S+     
Sbjct: 662  ELKTILDTATDGVVLIDPEGRIRSMNHSASALFG-YERDEAEGKFFSMLFAIESQRAAMD 720

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAER 553
                L    + S  ++ + + G         L  +I  LP+ +       ++T   R E 
Sbjct: 721  YLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEE 780

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
             LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + N +   Y+  
Sbjct: 781  ELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRD 840

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + +   + I+  
Sbjct: 841  INRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSS 900

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIP 731
                L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD +  V++ G  + 
Sbjct: 901  FQSNLPDIVADSRSIKQVALNLLSNAVRFTALGGQVIVSTSYELNGDVVMRVRDTGIGMS 960

Query: 732  EDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +   +     F            +A   +  G GLGL + ++ +  +    +I S+    
Sbjct: 961  KSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQG 1020

Query: 782  TTINCRIP 789
            T +    P
Sbjct: 1021 TVVEIVFP 1028


>gi|30248080|ref|NP_840150.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC
           19718]
 gi|30179965|emb|CAD83960.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC
           19718]
          Length = 1229

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 165/401 (41%), Gaps = 34/401 (8%)

Query: 420 TVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR----- 473
           T +++ L  +     +     ++H+ + V      G +   NP    L+           
Sbjct: 401 TARLEQLNAELAIKEEETRSVVEHMVDCVVTTDERGVMLSVNPVMEKLFGYTVEEAIGQN 460

Query: 474 ---LSPGTHIRNIAATCSRYYNESDGWDLFAA--------IITSFDDERKSLQGTLELLS 522
              L P            RY +   G              +    + E     GTL  + 
Sbjct: 461 VAVLVPKPDRDMHEYYMQRYCHTGYGQQYVGRPQQPGGHHVGLGREVEGVHKDGTLLPVY 520

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +V EY +             ++ + V+  + L +       A++ K++F+  +S+E+R+
Sbjct: 521 LAVSEYFVG--DKRHFTGIMRDMREHVKIRQDLEQARRDAELANQAKSAFLAAMSHEIRT 578

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  +IG  D+L  +   SL+S Q +  + I  S+ +LL ++ DILD + ++AG +++  
Sbjct: 579 PMNGVIGMIDVLSQT---SLSSYQKEMTDLIRESAFVLLEIIEDILDFSKIEAGRLEIEQ 635

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
             I L  ++     ++        + + +  D  L  +   D  RL QI   +++NA+ F
Sbjct: 636 RPISLEKVVERACGTLTHMAASKEVELILFVDPALPKNVAGDALRLRQILINLINNAIKF 695

Query: 702 SS----KGSTVI--LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           SS     G  ++  + A R NGD +   F V +NG  + +   + +F  F        RR
Sbjct: 696 SSGMSRPGCVIVKAVPADRANGDVVTVLFQVIDNGIGMDDATRERLFTPFSQGDTSTTRR 755

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLGL+I    + L  G +++ S     +T   RIP +
Sbjct: 756 FGGTGLGLTICRRLVELMKGDITVESQPGKGSTFKARIPFR 796


>gi|262381697|ref|ZP_06074835.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296874|gb|EEY84804.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 632

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 128/641 (19%), Positives = 258/641 (40%), Gaps = 65/641 (10%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK---------- 235
           + +   +   K+L D  +  +W  D      +    Y  +     I  +K          
Sbjct: 2   EDIQTQLDQCKLLLDRAEVGLWEAD------FVQRGYICSDYLMSIFGKKGNNLSFFEFY 55

Query: 236 -AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
             I E  +         + S    E+ F     T E       ++     + G    A+ 
Sbjct: 56  YIIREDFRDLITTDFLSIQSVDTYEQIFPIITPTGEKWVRS--RLCERKLNNGVCVKALG 113

Query: 295 VS--------KEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           +         KE  ++  + H   I      NL V + ++D++ YL       ++L   D
Sbjct: 114 ILQILPNFKLKEEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYL-------IDLNAKD 166

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWH--LPNGQ 398
           +         D L   + S   +P+ +  K  KEN    ++ + + K  D ++     G+
Sbjct: 167 MEIFGIRSKKDVLGVNIFSNPIMPKDV-IKKLKENKSVNFRLNYSFKKVDDYYNTSKVGE 225

Query: 399 TLHVIVTS--NPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              V   S    + G     + +  + T ++    + +    V      +   G A++  
Sbjct: 226 MDIVTKASILYDQRGEPSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDL 285

Query: 453 ---DGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              +G  IK     + ++ + +   LS    I +        Y  S   ++       F 
Sbjct: 286 YTFEGYAIKQW---YENMGEKDGTPLSQIIGIYSYIHPNDAGYINSFFEEVKQGKAHHFR 342

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            E +   G       + +  +   +   +  +  +N   +   +  L    E   + D +
Sbjct: 343 REVRVKSGDGWKWICANITRNPQSVDPNKPEMICINYDITELKDSQLK--RERAEELDRL 400

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++ +LL L++DIL
Sbjct: 401 KSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNNRMLLQLISDIL 457

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +++G M   ++ + + +++NE+  S   KM + N+ +    D       +DR RL 
Sbjct: 458 DLAKIESGTMDFKFADMNVKEVINEIVTSFRIKMPD-NVALIAPQDSPECQIYSDRMRLT 516

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ S  L+NA+ ++S+G  + L       +  FSV + G  + +++   +F+RF      
Sbjct: 517 QVISNFLNNAIKYTSEG-CITLAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTF 575

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++G GLGLSI E+ +N  GG + ++S     +T     P
Sbjct: 576 --KQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|148657974|ref|YP_001278179.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148570084|gb|ABQ92229.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 1022

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 157/386 (40%), Gaps = 29/386 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           M +++        +         + ++   E + V     RI  +N A   L    +   
Sbjct: 364 MLDDI---AQAARRLAESEARYRQLVEISPEAIIVHDGK-RIIYTNQAGARLVGHTDPS- 418

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                 + I A  + +   +   +    ++      R     T+   +   LE    P  
Sbjct: 419 ------QLIGADATPFLPPALHLETAEGVM------RYERDLTIADGTGISLELVAAPFL 466

Query: 535 NAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                   +   N+T   + E AL +  E   +A+  K+ F+ ++S+ELR+PLT IIG+ 
Sbjct: 467 AEGKPAWQIVAHNITVRKQTEEALRQAKEWAEEANRTKSRFLANMSHELRTPLTTIIGYA 526

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DL+  S       + +  +  +  +   LL ++ND+LDL+ ++AG M+++     +  L 
Sbjct: 527 DLITISVHSGEFDQVASDIARVRDAGKHLLAIINDLLDLSKIEAGRMEIHSERFSVRALA 586

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            EV  S+     + N  + +  D  +    +D  R+ QI   ++ NA  F+  G+ V L 
Sbjct: 587 EEVIASMRVFAQKRNNDLTLNIDPTVEMMHSDDVRVRQILYNLVHNACKFTEDGA-VTLD 645

Query: 712 AARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
            AR   D       +F++ + G  +  D    +F  F        R   G GLGL++   
Sbjct: 646 IARTVSDHDHAALLVFTISDTGIGMTADQIAGLFREFTQADSSTTRKYGGTGLGLALCRR 705

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
             +L GG ++++S     TT    +P
Sbjct: 706 LTHLLGGKITVTSQPGVGTTFVVTLP 731


>gi|225569214|ref|ZP_03778239.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM
           15053]
 gi|225162013|gb|EEG74632.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM
           15053]
          Length = 678

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 168/445 (37%), Gaps = 42/445 (9%)

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL-TVQVDLE 426
           +  +  W E    V + +   KD     NG+   + ++            ++ T +  LE
Sbjct: 92  EDEYYEW-EFYNPVLERTFMIKDRLINWNGRMARMELS-----------HDMYTSKFKLE 139

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSLWKTE----------ENRL 474
            K       Q   +  +  G A         +      F  +              +   
Sbjct: 140 KKSRE----QDALLRSVPGGFARLDARDCSTVLWYGADFLGMIGYTAKQFEQELDSQCSY 195

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                ++ I                 A +IT    E K L  TL   S     +  IP  
Sbjct: 196 LHPDDLQRIIPILHELETSGGSAVTEAQVITR-SGETKILTITLSYASGEE-SWDGIPSF 253

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +       +  R  + L +  +  R A E K +F+  +S+++R+P+  I+G T + 
Sbjct: 254 YTIGIDITKERMEQERQRKMLEDAYKTARIASEAKTNFLSSMSHDIRTPMNAIMGMTAIA 313

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +       K    +  I+AS+  LL L+N++LD++ +++G + L + T+ L +L   +
Sbjct: 314 EANLYTP--DKLKDCLSKINASAQHLLGLINEVLDMSKIESGKIDLTFGTVSLPELFQNI 371

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                    E N ++++  D     + + D  RL Q+   +L+NA+ ++ +G  + L   
Sbjct: 372 SDMCRPLAQEKNQKLQLSVDDVCHKTVITDGGRLQQVLMNLLTNAIKYTPEGGAISLHVR 431

Query: 714 RD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFI 765
                    G + F V +NG  +  +    +F  F         + +G GLGL+I ++ +
Sbjct: 432 EIPSDAVYKGQYEFIVTDNGIGMTAEYIPHIFEPFSRAEDTRINKIQGTGLGLAITQNIV 491

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
           N+  G + + S  E  +     +P 
Sbjct: 492 NMMNGTIEVQSEPENGSRFIVAVPL 516


>gi|75909218|ref|YP_323514.1| histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75702943|gb|ABA22619.1| histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 603

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 3/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L   N+ L + +++KN F+ + S+E+R+PL++IIGFT LL          +  +Y+  
Sbjct: 217 QNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDPTRERHHEYLNI 276

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LL L+NDILDL+ ++A  +++ +  + + +L   V   I  K     +++ + 
Sbjct: 277 IQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAANKGVKLSLE 336

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  + +FVAD  RL Q+   +L NA+ F+++G TV LK  +      F+V + GS I  
Sbjct: 337 LDPHIKTFVADPLRLKQMLLNLLFNALKFTNQG-TVGLKVTQRESFIHFTVWDTGSGISP 395

Query: 733 DMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F  +    +    Q  G GLGL +      +H G V + S  +  +     +P 
Sbjct: 396 ENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVESQVDHGSRFTIILPL 455

Query: 791 KE 792
           ++
Sbjct: 456 QQ 457


>gi|29347950|ref|NP_811453.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572542|ref|ZP_04849944.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29339852|gb|AAO77647.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837957|gb|EES66046.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 391

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 186/384 (48%), Gaps = 27/384 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE----ENRLSPGTHIRN 482
            K      +    + ++   + +   D ++  +N  +  L  T+    E R+      RN
Sbjct: 10  RKLEHTNHIASAILKNVHAYILLIDNDFKVLKTN--YYQLTGTQKGLEEKRVGDLLQCRN 67

Query: 483 I--AATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLS--------DSVLEYSI 530
              A      +       +  AI  +F+  R    L  TL +L+        D+V+  S 
Sbjct: 68  ALSAEGGCGTHAYCGSCPIRCAIRQAFEQRRGFTDLNATLNVLTSEKKSVECDAVISGSY 127

Query: 531 IPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             L   + M+ T  ++T   +AE+ L    E    AD  K++F+ ++S+E+R+PL  I G
Sbjct: 128 FLLNEEENMVLTVHDITQLKQAEKQLALAKEKAENADLSKSTFLANMSHEIRTPLNAITG 187

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F ++L +    +   +++QY E I  ++ +LL LVNDILD++ ++AG ++  Y+ + +N 
Sbjct: 188 FAEILAS---ANTEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINL 244

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGST 707
           LL++++Q    K+++    I++I++  L   S   DR R+ Q+ S   +NA+ F+ +G T
Sbjct: 245 LLSDLRQLFQMKVNDAGGNIQIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEG-T 303

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           + +     + +  F V + G+ IP D    VF RFV       ++G GLGLSI ++ +N 
Sbjct: 304 ISIGYEARDTELYFYVTDTGAGIPADKLPEVFGRFVKL--NKDKKGTGLGLSISKTIVNK 361

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
             G +   S +   +T    IP +
Sbjct: 362 LEGQIGADSVEGKGSTFWFTIPYR 385


>gi|270295411|ref|ZP_06201612.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274658|gb|EFA20519.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 388

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 169/342 (49%), Gaps = 16/342 (4%)

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
            G  G I   N A  +      + L     +RN        +     +   AAI+   D 
Sbjct: 45  TGRVGDILRCNNALSAAGGCGTHDLCEHCPVRNAIENA---FVVRKNFTDLAAILNLRDS 101

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           E ++ +     +S   +E           ++T  ++T   + E  L    E    AD  K
Sbjct: 102 EGRTTECNA-YVSGEYMEIE----DRDCMVITVHDITRLKQVEAELKLAREKAENADRSK 156

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+PL  I+GF++LL +    S + +++Q++E + +++ +L  L+ DILD
Sbjct: 157 SVFLANMSHEIRTPLNAIVGFSELLAS---ASTDEEKTQFLEIVQSNNEMLQQLIADILD 213

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRL 687
           L+ ++AG ++  +S + +N ++++++Q    ++ E  + ++I   +  K  +   DR RL
Sbjct: 214 LSKIEAGTLEFVFSDVDINQMMSDLEQQFRMRVAELGSGVQIVREASEKEYTMHTDRNRL 273

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+ S  ++NA+ F+ +GS + L          F VK+ G+ IP++    VF RFV    
Sbjct: 274 AQVVSNFMTNALKFTQEGS-ITLGFRPYEEGLYFYVKDTGTGIPQEKLPHVFERFVKL-- 330

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + ++ G GLGLSI ++ +   GG + + S +   +T    +P
Sbjct: 331 KQEKNGTGLGLSICQTIVRKLGGEIGVESEEGAGSTFWFTLP 372


>gi|239627656|ref|ZP_04670687.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517802|gb|EEQ57668.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 891

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 111/538 (20%), Positives = 206/538 (38%), Gaps = 61/538 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           KE     Q     ++ +++   I  F  D    +   NR   E +           S  E
Sbjct: 90  KEQEYKQQADFLSQLYNSVPCGILQFSTDPEHRIINVNRMVWEAYGFG--------SEAE 141

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHV------IVTS 406
               +RS   L    + K  ++ +  +    +T          +G+ + +      IV +
Sbjct: 142 YRSVIRSPYDLVSDQDRKWIEDLVDGLVLDGDTVAYIRQGVRRDGRQIWISVVMGRIVNA 201

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH--LSEGVAVFGP------------ 452
           +       +F ++T    +E     L + + + I++  L   +    P            
Sbjct: 202 DGLEVIQAVFTDITELRRME-----LEQERQQMIENRSLQAAICTACPLIMSVNLTRDTF 256

Query: 453 ----DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
               +G+   +     S     E                  ++      + FAA      
Sbjct: 257 NCFIEGQELYAGKRQGSYSGMLEYFCPLVYP--AYQEDYISHFKREHVMERFAAGEREIY 314

Query: 509 DERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-----LTEKNEA 561
            E + +        +S  ++ Y   P       +  V V D+ RAE+A     L +   +
Sbjct: 315 MEFRQIGKDDEYHWISLQII-YVENPFNGDMLAIILVKVLDAQRAEQARQEQLLRDALAS 373

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            + A+  K+ F+  +S+++R+P+  IIG +  +   KLG   S Q  + +   ASS  LL
Sbjct: 374 AKAANRAKSDFLSRMSHDIRTPMNAIIGMS-TIGQLKLGDDRSVQDCFRKID-ASSRYLL 431

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +L+NDILD++ ++ G M+L+       +L+ E+ Q +  +  E  IR ++  +  L   +
Sbjct: 432 SLINDILDMSKIETGKMELSQEYFDFAELIGEIDQIVYPQAQEKKIRYEIYHEEPLEQYY 491

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735
           V D  R+ QI   +LSNA+ F+S    + +               F V+++G  + ++  
Sbjct: 492 VGDSLRVKQILLNLLSNALKFTSADGLIQINIQEQKRTNGFSYIRFCVRDSGIGMSKEFR 551

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +F  F   +    R   G GLGLSIV + + L GG + + S           IP K
Sbjct: 552 SRIFQPFEQESPEAARNNVGSGLGLSIVYNLVQLMGGTIEVESEKNKGAAFTVTIPLK 609


>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
 gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
          Length = 923

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  R L    EA     + K+ F+  +S+E+R+P+  ++G T+LL  ++   L   Q Q+
Sbjct: 251 QRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELLLGTE---LEPTQRQF 307

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE +  S   LL+++NDILD + ++AG ++L+     L +LL E  +  +       + +
Sbjct: 308 VEAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLEL 367

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVK 724
                      V  D  RL QI + +L NA+ F+  G     +++   RDNG      V 
Sbjct: 368 VADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEPRDNGLKLALVVS 427

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP D  + +F  F+       R   G GLGL+I    +++ GG + + S+     
Sbjct: 428 DTGIGIPLDAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVESTPGKGA 487

Query: 783 TINCRI 788
                +
Sbjct: 488 AFTVEL 493


>gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 656

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 158/375 (42%), Gaps = 22/375 (5%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
           T   +  + I   S G   +        SN  +      +   L+    I     T  R 
Sbjct: 35  TQNGLLQKAIQAASAGTFFYS-----TRSNETYWDENSLKMFGLAGQGQIIP-PGTWERL 88

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVLEYSIIPLPNAQTML-----T 541
            +  D     + I  + + + +       +L        ++ +   + N Q         
Sbjct: 89  IHPLDREKALSEIFNALNGKGQLFTHVYRILLPGGEIRWIKGTGFVVRNDQGDPLEITGF 148

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             N+T  +RAE+ L +     R+A E K +F+ ++S+E+R+P+  IIG  +LL+      
Sbjct: 149 HFNITGQIRAEQKLKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHE---D 205

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N  Q +Y+  +  SS +L+ +++DILD++ ++AG + L      +  +L++        
Sbjct: 206 PNQTQKRYLATLRNSSNVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCLSVYTQI 265

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF 719
            +  NI +    D  +      D  RL Q+   ++SNA  F+ +G   V ++        
Sbjct: 266 SNRKNILLTGRVDAAVPIQIQGDSSRLQQVLMNLISNAFKFTDQGHILVRVECTEQKDRL 325

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            FSV+++G  I E+   S+F RF  V  +      G GLGL+IV   + L GG V I S 
Sbjct: 326 RFSVEDSGVGIAEEAQASLFERFNQVDQSASRSSGGTGLGLAIVREIVELWGGDVWIRSR 385

Query: 778 DEGVTTINCRIPSKE 792
                T    IP ++
Sbjct: 386 SGHGATFFFDIPVQQ 400


>gi|299782693|gb|ADJ40691.1| Sensor protein [Lactobacillus fermentum CECT 5716]
          Length = 619

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 162/417 (38%), Gaps = 34/417 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   +   +     + 
Sbjct: 211 EEMRKQTLRIARGDFSGQVKVMGNDELGQLAGAVNNLSVRVEESQESSDAERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N          +     G  I ++     ++           
Sbjct: 271 HMSDGVLATDRRGNLTIVNNTALQFLNIADEEQVLGKSILDVLKIRRQFS---------- 320

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             I    DE +      +L  D +L     P+      ++ +         +        
Sbjct: 321 --IRHLVDEDQDQVILDDLNEDLILSAYFSPIKRESGFVSGLVCVLHDVTSQQ------- 371

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L    +        +++  +S  +  ++
Sbjct: 372 --KEERERKEFVSNVSHELRTPLTSVKSYVEALSDGAIND-PELAPRFLGVVSDETERMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-------ENNIRIKVISD 674
            ++ND+L L+ +D+G  KLN   + +N+L N +       +        +    I     
Sbjct: 429 RMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSKKKYTIVRYFT 488

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP   
Sbjct: 489 KKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKD 548

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF  V  A   ++ G GLGL+I +  +NL GG + + S +   +T    +P
Sbjct: 549 LGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus pseudofirmus OF4]
          Length = 593

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 154/370 (41%), Gaps = 28/370 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +  ++    +     I+++  G+      G I L N     +++             N 
Sbjct: 236 QITKRHEAQQERLETLINNMGSGLIFINTRGDISLINQKCHEIFE------------ENT 283

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTML 540
               ++ Y+E         I+ +     K  +  ++L++       +    P+ +   M+
Sbjct: 284 DKWLNQLYHEVFKSKELIKIVQTIFITEKRHREQIQLVTGIDTKHFDIQAAPILSEMGMV 343

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             + +      E         L+K ++++  FV +VS+EL++P+T+I GF++ L    + 
Sbjct: 344 KGIVLVLHDITE---------LKKLEQVRKDFVANVSHELKTPVTSIKGFSETLLDGAMA 394

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +   +++  I   S  L +L+ D+L+L+ ++    +LN+    L  ++ +  + +  
Sbjct: 395 D-PAYMEKFLTIIHKESERLQSLIQDLLELSKLEQHYFRLNWGRAELTKIVQDAVELLRP 453

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K     I + + +   +     D +RL Q+   ++SNA+ ++     + +   +D+   +
Sbjct: 454 KAEAKEIALSLHAASSV-EMDGDSERLKQVAINLISNAITYTPNHGEINVSVTQDHQSIL 512

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F+V +NG  I       +F RF        R   G GLGL+IV+  +  H G +S+ S  
Sbjct: 513 FTVSDNGIGIESSELPRIFERFYRVDRARSRNSGGTGLGLAIVKHLVEAHNGKLSVESEL 572

Query: 779 EGVTTINCRI 788
              TT     
Sbjct: 573 GHGTTFTIHF 582


>gi|152995210|ref|YP_001340045.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150836134|gb|ABR70110.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 601

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 122/261 (46%), Gaps = 9/261 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N        +          L    EA  +A + K  F+  +++E+R+P+  ++G   LL
Sbjct: 189 NRTYWQALNDNLKLSEQAEELERAKEAAERAGQAKADFLAAMTHEIRTPMNGVLGMAQLL 248

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +G LN KQ Q V  I+ +   L++++N+ILD + ++A  + L        +++NEV
Sbjct: 249 A---MGDLNEKQKQQVTVINNAGRTLMHIINNILDYSKINAEQLALEKIPFDTRNVVNEV 305

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
           K  +A +  +  I +K   +      + D  RL QI   ++ NA  F+ KG   + + + 
Sbjct: 306 KLLLAPQFEKKPITLKSSIENIPSFVLGDPFRLHQILYNLVGNAFKFTEKGEISIEVSSK 365

Query: 714 RDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLH 768
             + +      FSVK+ G  I  +  + +F +F   +H     RG GLGLSI +  + L 
Sbjct: 366 ESDAENTVILSFSVKDTGIGISPEDQEQIFEQFYQVSHFDPNIRGTGLGLSITQRLVELM 425

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +S++S     +     IP
Sbjct: 426 GGTISLTSEIGVGSRFTVDIP 446


>gi|320157836|ref|YP_004190214.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|326424352|ref|NP_763089.2| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|319933148|gb|ADV88011.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319999740|gb|AAO08079.2| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 646

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 10/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A+  K+ F+  +S+E+R+P+  IIG   LLK  +   L+S+Q QYVE I
Sbjct: 230 ELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEME---LSSEQKQYVEMI 286

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + SS  LL+++NDILD + ++AG M ++     L+DL+ ++      K H  N++  V  
Sbjct: 287 NHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAHAKNLQFVVEL 346

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGS 728
              +      D + L Q+ + +L NA+ F+ +G   ++ A   +        F V ++G 
Sbjct: 347 AEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVVAKELDAQHIPHIRFQVFDSGI 406

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ++  + VF RF        R   G GLGL+I    ++L GG + + S     +    
Sbjct: 407 GIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELKSEVGLGSCFEF 466

Query: 787 RIP 789
            +P
Sbjct: 467 SVP 469


>gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra
           magnipapillata]
          Length = 566

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  +A   A+  K+ F+ ++S+E+R+P+  +IG T+LL  +   +L+++Q +Y+  
Sbjct: 43  EELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDT---TLDAEQQEYLNI 99

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + +SS  LL ++NDILD + ++AG M +      L   + +  +++  + H+  + +   
Sbjct: 100 VKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAHDKGLEVVWD 159

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGD--FIFSVKNN 726
               +  + V D  RL Q+   IL NA+ F+ +G  V L+  ++   NG      +V + 
Sbjct: 160 VAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVV-LRIRQEVASNGKPLLHLAVSDT 218

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +   S+F+ F        R   G GLGL+I    +   GG + + S+    +  
Sbjct: 219 GIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVESTPGQGSVF 278

Query: 785 NCR 787
           +  
Sbjct: 279 HFT 281


>gi|163742422|ref|ZP_02149809.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
 gi|161384372|gb|EDQ08754.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
          Length = 759

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 9/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E AL E  +A   A+  K+ F+ ++S+E+R+P+  +IG  +L+  +    L+  Q
Sbjct: 218 ERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET---DLDEDQ 274

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y E IS S + LL ++NDIL+ + ++AG M+L  +   L   + +V   ++ K  E N
Sbjct: 275 TMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKN 334

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFS 722
           + + +  D  L      D  R+ QI + +  NA+ F+ KG   + +    D+       S
Sbjct: 335 VEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTALRIS 394

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G+ IP+D    +FN F            G GLGL+I    + L GG +S+ S    
Sbjct: 395 VTDTGAGIPDDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGK 454

Query: 781 VTTINCRIPSK 791
            +     +P +
Sbjct: 455 GSVFTIDLPLR 465


>gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/584 (16%), Positives = 206/584 (35%), Gaps = 38/584 (6%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-KSYKIVRV 282
            + +      +K +      F + ++ R +    +           + G   +       
Sbjct: 73  DDLKATTENLEKHLANPDHPFDQVVRYRHLKGHTVWVRCRGLAIRDKQGRPIRILGAHND 132

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVEL 338
           +  + +  +A++ + + T+         ++ NL   + I+    D    +   +++  +L
Sbjct: 133 ITEYKQQQLALEET-QATLRQSEDKYRTLVENLP--VLIYRSEVDAPWAMLHASQNAEQL 189

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD---TWHLP 395
                    +      +   +     L E    +  K       +    H+     W   
Sbjct: 190 CGYSSDEFLSG-QLTWVDVIVAEDLPLVEAAVQQAIKAREKYTVEYRIRHQKGHVIWVSE 248

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDG 454
            G         +P      +  ++T +V  + + +          +    G+A+     G
Sbjct: 249 TGSAQDYDQNGHP-AYLDGVIADITDRVQAQKEISAQEAKFRGLFELSPVGIAMNDFATG 307

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIR----NIAATCSRYYNESDGWDLFAAIITSFDDE 510
                N A               ++             R     +    +      +   
Sbjct: 308 EFLEFNAAVNEPAGYTPEEFKQLSYFDVTPMEYMEDEKRQLESMEKIGRYGPFEKEYI-- 365

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK       LL+      +  P   A       ++++       + +  EA   A+  K+
Sbjct: 366 RKDGSRYPVLLNGFK---TTTPEGKAVIWSIIQDISE-------IKKAQEAAEAANRSKS 415

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  IIG   L   S+      +   Y+E I+ S+  LL L+NDILD 
Sbjct: 416 EFLANMSHEIRTPMNAIIGLGQLALKSQ-PPPPPRLYDYLEKITGSAATLLTLINDILDF 474

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQ 689
           + ++AG + ++     L+++LN++   +A +  E  + +    D G     V D  RL Q
Sbjct: 475 SKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRLGQ 534

Query: 690 IFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           +   + SNA+ F+ +G  T+  + A    D      +V++ G  +  +  + +F  F   
Sbjct: 535 VLINLTSNAIKFTQQGEVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFTQA 594

Query: 746 A--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 +  G GLGLSI    + L GG + + S+    +T +  
Sbjct: 595 DGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638


>gi|134299413|ref|YP_001112909.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052113|gb|ABO50084.1| GAF sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1]
          Length = 1021

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 178/386 (46%), Gaps = 32/386 (8%)

Query: 415 MFENLTVQVDLETKYNTLVK-----------VQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           M+E++  Q  L  + N  ++           +    ++ ++E + +   D  +   N  +
Sbjct: 461 MYEDILEQAALVEQLNAQLETEKDNLSRAREITRSVVESINEAIVMVNIDDEVVAVNKRW 520

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           + L++  E  L   +       +     N ++ ++    I+    +     QG      +
Sbjct: 521 QELFE-YEGDLRGSSSEVLFRTSIDCLENSAEAYNKLTEIMAHPMN-----QGEF----N 570

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +V E  ++ +     +    N+   +   R +T + E     D +K+ FV  VS+ELR+P
Sbjct: 571 AVQENRVLRVWTGPVLDRAENLIGRLYVFRDITIEAEV----DRMKSEFVSTVSHELRTP 626

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L++I+GF++LL   KL      +++Y + I   +  L +LVND LDL  ++ G    +  
Sbjct: 627 LSSILGFSELLLIKKLS--EEARTKYTKTIHKEAKRLTDLVNDFLDLQRMELGKQVYDKE 684

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +  DLL EV +S A    +++I ++ +   +     AD++R+ Q+   +LSNA+ FS 
Sbjct: 685 DFIALDLLAEVVESFAASGVDHDITLQTV---ERFFINADKERVTQVLINLLSNAVKFSP 741

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
           KG+ + L    D     F +K+ G  IP+D+  ++F++F    +  +R   G GLGLSI 
Sbjct: 742 KGTKITLGVTPDEEYAKFFIKDQGLGIPKDVQDNLFSKFYRVDNSDRRKIGGTGLGLSIC 801

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
           +  +  HGG + + S     +     
Sbjct: 802 KEIVEAHGGKIWVESEHGHGSVFYFT 827


>gi|256004999|ref|ZP_05429971.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|255991068|gb|EEU01178.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
          Length = 1105

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 7/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R  R L  + E L K ++ ++ F+ ++S+ELR+PL +II  + +L   K+   + K 
Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKD 575

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I+ +   LL L+ND+LDL+ V++G M LN  T   ++L+ +++Q   +   E N
Sbjct: 576 MEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKN 635

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSV 723
           I    + D      V DR ++ QI    LSNA  F+S+GS + LKA  D     D IFSV
Sbjct: 636 ISF-FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVI-LKAEMDKDRENDVIFSV 693

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IPE+    +F  F         +  G GLGLSI +   +L  G + + S     
Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753

Query: 782 TTINCRIP 789
           +T   ++P
Sbjct: 754 STFFLKLP 761


>gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 865

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 163/394 (41%), Gaps = 10/394 (2%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
             + +  G    +F+ +   +  +       K   + +D ++  + V   D  I+  N A
Sbjct: 250 ERSPDELGELGRVFDRMADAIQAQDGLRLSKKYVDDVLDTMTNALVVLDEDAIIEKVNRA 309

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              L   +E+ L  G     I    S     +         +   +    + QG + +++
Sbjct: 310 TCRLLACDESELV-GARAERIFGMFSEATGAATPVPWAEEHMQDAEIALFTRQGEVRMVA 368

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            S    ++    +A+ +    ++T+  R    L E   A   A + K +F+ ++S+ELR+
Sbjct: 369 FSG--ATMRDEGDAKIVCMLEDITERKRLIAELIEAKGAAESATKAKTAFLANMSHELRT 426

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G+  +L      +L  +Q   +  +  S   L  L+ D+LD++ +++  M+L  
Sbjct: 427 PLNAILGYAQMLGDD--DNLTEQQRDALTTMRTSGEHLATLLEDLLDISKIESDRMELAP 484

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
           S   L   L+ +      +     +       G L     AD +RL Q+   +L NA+ F
Sbjct: 485 SEFELTRFLDGLVAPFRMRAESKELHFGYEISGDLPGMVRADERRLRQVLINLLGNAIKF 544

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSI 760
           + +GS V  +A   +G   F V++ G  IP D  + +F  F       Q+  G GLGL+I
Sbjct: 545 TERGS-VTFRANMHDGKVRFQVEDTGRGIPGDAMEDIFAPFRQAGQPEQQVEGTGLGLAI 603

Query: 761 VESFINLHGGHVSISSSDEGVTTIN--CRIPSKE 792
            +  + L  G + + S     +       +P+ E
Sbjct: 604 SKRLVELMDGSIGVESVLGRGSVFWAEVALPAVE 637



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 14/195 (7%)

Query: 252 MISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSFGEAG-----IAIDVSKEITVNDQ 304
             S  A      + V     G    ++++  R  +  GE G     +A  +  +  +   
Sbjct: 222 ARSLVARLHGLAKVVRAFGEGELTRRTHE--RSPDELGELGRVFDRMADAIQAQDGLRLS 279

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
             +  ++L  +T A+ + D++  ++  NR+   L   D + L      + +      A  
Sbjct: 280 KKYVDDVLDTMTNALVVLDEDAIIEKVNRATCRLLACDESEL-VGARAERIFGMFSEATG 338

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
               + W         +   +   +      +G T+            + M E++T +  
Sbjct: 339 AATPVPWAEEHMQDAEIALFTRQGEVRMVAFSGATMRDEG----DAKIVCMLEDITERKR 394

Query: 425 LETKYNTLVKVQGET 439
           L  +           
Sbjct: 395 LIAELIEAKGAAESA 409


>gi|71018371|ref|XP_759416.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
 gi|46098947|gb|EAK84180.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
          Length = 1482

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 115/747 (15%), Positives = 234/747 (31%), Gaps = 133/747 (17%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +S+          +    +LS    + + +F +++  +      G  +  N +  +  + 
Sbjct: 421  ISIVPTRLAERRMSPADLQLSKAEQLKEGVFHTIETAIMALSSDGSTVIRNRACDEMLKM 480

Query: 229  EGIVFQKAIGESRKL-------------------------FKEEIKK------RMISSSA 257
                  +   + ++                          F E   +      R      
Sbjct: 481  FEKKNPQDKPKKQEQPKPHKEGVEVDLSWLSDVMVCYTEDFSEPFPEQNWPIYRAAILGQ 540

Query: 258  LEKNFCETVSTLEHGNNKSYKIVR--------VLNSFGEAGIAIDVSKEITVND------ 303
              K         + G  + Y+IV           +  G     +DV+             
Sbjct: 541  FTKPVRIGCVATDTGVRRVYEIVAKPIRDAGGFGHHIGGVITLVDVTDTEKKYRLEVEKK 600

Query: 304  QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
               +   I  ++   +     +  + + N  +     +D   L +              +
Sbjct: 601  GEEYFRTICDSMPQMLWTAGPDGTVDWFNEGWYRFTGLDSQTLFSLGWQQCF----HEDD 656

Query: 364  KLPEQLNW-KTWKENI-FSVYKSSETHKDTWHLPNGQTLHVIVT-SNPRGGTIWMFENLT 420
                  +W  + +    + V   +  H   W    G+ L V    SN          +  
Sbjct: 657  MAETNAHWSHSLRTGEPYQVMYRARRHDGVWKWMLGRALPVREPGSNKVIKWYGSCTDCD 716

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS--------------------- 459
             +V                I+H    +     D  I ++                     
Sbjct: 717  SEVKALEASRKSQTQLTSVINHAHVTIWAIDLDAIITIAEGPGVRSLRLAPGTPNGSDGD 776

Query: 460  -------------------NPA------FRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                               N          S   ++     PG      +      Y   
Sbjct: 777  GSGSGSGNSLSGSLGAGTVNARSDESKDAESQTNSQSVVSGPGKRAAQRSMIGRSIYEVW 836

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA------------QTMLTF 542
            D   +  AI  + + E    +  +E            P                  +   
Sbjct: 837  DSPGIREAIGRALNGESVVQEMEIE---GRWFRTQYTPQREESYDHEANEGTIIGVVGAS 893

Query: 543  VNVTDSVRAERALTEKNEA----------LRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            +++TD  RAE  L E               ++A  IK+ F+ ++S+E+R+P+  +IG ++
Sbjct: 894  MDITDRRRAELKLEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSE 953

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  ++   L+ +Q  + E I  S+  LL ++NDILD   ++ G M L  +   LN ++ 
Sbjct: 954  LLCDTQ---LSQEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIM 1010

Query: 653  EVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--I 709
            + ++ +     +  +  +        G  V D  RL Q+ + +L+NA+ F++ GS    +
Sbjct: 1011 DTQKMLTFATQKKGLEFRNECQLNFTGQIVGDAGRLRQVLTNLLTNAIKFTAVGSITLRV 1070

Query: 710  LKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
            ++   D       F V++ G  I +   K +F  F         +  G GLGLSI ++ +
Sbjct: 1071 IETYEDQKSLHVHFEVRDTGCGISQATLKRLFQPFSQADPSFARRFGGTGLGLSICKNLV 1130

Query: 766  NLHGGHVSISSSDEGVTTINCRIPSKE 792
            +L GG + + S +   +     IP ++
Sbjct: 1131 DLMGGTIGLESVENKGSNAWFSIPFEK 1157


>gi|78357811|ref|YP_389260.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220216|gb|ABB39565.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 773

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 162/374 (43%), Gaps = 16/374 (4%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E+       +  +  ++  EG+      G +  +NPA   +                   
Sbjct: 241 ESSLRHAQTIYKDIFENALEGIFQITGRGYLINANPALARMLGYSSVMELLAERGTTPLK 300

Query: 486 TCSRYYNESDGWDLFAA--IITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTMLT 541
           +     + +    +  A   +  ++    +  G +  +S     +       P +     
Sbjct: 301 SLVNRRDLARMLRMLRAKGAVDGYETRVYTKGGGITWISVSARTIAKEETGQPESFRYEG 360

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           FV      R  R L +   A+ +AD+ K+ F+ H+S+E+R+P+ +++G  + +  +    
Sbjct: 361 FVKDITEHRRLRELEQTRTAMIEADKAKSDFLAHMSHEIRTPMNSVLGMAEQMLRT---P 417

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q + ++ +  S   LL+L+NDILDL  V+ G + L  +   ++ ++  V+  ++ +
Sbjct: 418 LSAEQKECMDVLKNSGESLLHLINDILDLTRVEGGQLALASAPFTVHAVVYGVRDMLSLQ 477

Query: 662 MHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----D 715
             + NI +   I+     + + D QRL QI   +L NA+ F+  G  V L  +R      
Sbjct: 478 ARQKNILLAATIAPDVRKNHMGDAQRLQQILVNLLGNAVKFTDNGE-VSLHVSRAPDAVH 536

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
           +GD +F+V++ G  I       +F +F   +     +  G GLGL+I    ++L GG + 
Sbjct: 537 DGDLLFTVRDTGIGITPAEQSRLFQKFSQASTAIHSRYGGSGLGLAISRHLVDLMGGTIR 596

Query: 774 ISSSDEGVTTINCR 787
           + S     TT+   
Sbjct: 597 LESEPGVGTTVTFT 610


>gi|110634292|ref|YP_674500.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110285276|gb|ABG63335.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 1038

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 480 IRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQ 537
           ++ +     R   E     +   +     +++ +SLQ +   L +   E          Q
Sbjct: 274 LQELLEETQRQAEELQTQSEELRSANEELENQSRSLQDSQVRLEEQQAELEQSNAQLEEQ 333

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T L  V   +  RA+ AL  K   L +A   K+ F+ ++S+ELR+PL +++    LL  +
Sbjct: 334 TQLLEVQRDELSRAQGALQAKARDLEEASRYKSEFLANMSHELRTPLNSLLIMARLLADN 393

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           + G+L S Q ++ E I  +   LLNL+NDILD++ ++AG ++L    + +  +L +++ +
Sbjct: 394 REGNLTSDQVKFAETIETAGNDLLNLINDILDISKIEAGHIELQIERVRVEPMLEKLRAT 453

Query: 658 IATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             +   E  +  ++    G      +D QR+ Q+    LSNA+ F+ KG  V+  A  ++
Sbjct: 454 FQSSASEKGLNFRIETVPGTPDRIESDPQRIEQVLKNFLSNAIKFTEKGEVVLSVAEEED 513

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
           G   F+V++ G  IPED  +++F  F         +  G GLGLSI      + GG + +
Sbjct: 514 GRIAFAVRDTGIGIPEDQQQAIFEAFRQADGSINRKYGGTGLGLSISSELTRVLGGEIRV 573

Query: 775 SSSDEGVTTINCRIPS 790
            S+    ++    +P 
Sbjct: 574 ESTVGQGSSFILVVPK 589


>gi|255013265|ref|ZP_05285391.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 622

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 111/630 (17%), Positives = 235/630 (37%), Gaps = 49/630 (7%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANIS----YKKNTETEGIVFQKAIGESRKLFKEEI 248
           S  +++ +     +   D+   ++    +    Y            +A+    K + +  
Sbjct: 12  SGLEMIMEKSPDTIVLVDRNLTLVKVISAKDDYYHYLANNCIGKQPQALFPDGKNYDQYE 71

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL---NSFGEAGIAIDVSKEITVNDQL 305
             R       E+      S       K+Y  +      N         DVS   T  +  
Sbjct: 72  IYRAAVKRVFEEQVKVDFSFEVSFEGKNYYYLSQASLFNEELVIVYTCDVSSLKTEKNLQ 131

Query: 306 THTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSND---------- 353
                IL  L + + + D +      + N    E+  I+   +  +   +          
Sbjct: 132 ELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGIETREIEGHDDFEVNYNALMTAE 191

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           E LE   +  K      +K   ++    Y+  E  K    L NG+ L            +
Sbjct: 192 ERLETDMNVIKTGLTARFKGKVKSASGDYRDIEVAKYPISLNNGKPL-----------VL 240

Query: 414 WMFENLTVQVDLETKYNT--LVKVQGETIDHLSEGVAVFGPDGR------IKLSNPAFRS 465
            ++ ++T ++  E       ++      I  +        PD        +   N    +
Sbjct: 241 ALWRDITSELATENTLRRTRILTKMALRISDIRTCSIFIDPDSTHNFKDSVVTLND--WN 298

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
               +   +S G  I         +Y+          I  +  + R    G  E +   V
Sbjct: 299 TMSEDMIEVSWGQFISRAHPDDQEHYHNMFTRLCRGEISEARIEARMLFPGKKEYVWREV 358

Query: 526 LEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                      +    +    N+ +    E +L E       AD++K+ ++  +S+E+R+
Sbjct: 359 FATVYERDEKGRPSVILGCSTNIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRT 418

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I GF++L+        + ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y
Sbjct: 419 PLNAITGFSELMA---FADTDEERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITY 475

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + +++L++ +  S   ++    +++ +  +     F  D  RLLQ+ + +++NA+  +
Sbjct: 476 EQLDVSELMDTIYASAKLRVP-GGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNT 534

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS  +    + +    F V++ G  I ++  K VF+RFV         G+GLGL+I +
Sbjct: 535 KEGSITMGYTIQPDDQLRFYVRDTGIGIDKEKLKDVFDRFVKINDY--MEGIGLGLAICK 592

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +   GG + ++S     +  +  +PS E
Sbjct: 593 GLVVKMGGSIHVTSELGVGSEFSFILPSHE 622


>gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 828

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 157/377 (41%), Gaps = 21/377 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           ++ ++  +  ++V      +  +SEGV     DGRI   N +   L    E  +  G HI
Sbjct: 136 IRQNINRELLSVVNRYKMILGKMSEGVFEVTADGRITYVNSSALLLTGLPEKSV-YGVHI 194

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQT 538
             +              D    +  +  ++      +  +L+   +  SI+PL +  +  
Sbjct: 195 AELFPHRDDGGRMRVALDRLGEVPLTMGED------SPLVLNHRQVSVSILPLNDETSSA 248

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +   ++T+  R E+AL E  E    A + K+ F+ ++S+E+R+P+  +IGFTD+L  + 
Sbjct: 249 AVILTDITERKRVEQALIEAKERAETASQTKSHFLANMSHEIRTPMNAVIGFTDMLLDT- 307

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L   Q  Y      S   LL+L+NDILD + ++AG +           L  +V + I
Sbjct: 308 --DLTDDQRDYAMTAKKSGESLLSLLNDILDFSKIEAGELNFEKIDFDPELLSYDVCEVI 365

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---AR 714
             ++    + I       + SFV  D  R  Q+   ++SNA  F+  G  + L     A 
Sbjct: 366 RPRVESKPVEILCHVGADVPSFVKGDPGRYRQVLVNLMSNATKFTESGE-IELSLDVEAE 424

Query: 715 DNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
           +     F  +V++    IPED    +F+ F         +  G GLGL++         G
Sbjct: 425 EADRIKFHATVRDTAMGIPEDKLSLIFDPFQQADGSMTRKYGGTGLGLTVCRQLSRFMDG 484

Query: 771 HVSISSSDEGVTTINCR 787
            V + S     +  +  
Sbjct: 485 DVWVESEVNKGSIFHFT 501


>gi|237711472|ref|ZP_04541953.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454167|gb|EEO59888.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 807

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 206/510 (40%), Gaps = 30/510 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E     +  +   I  NL   I ++D++ ++        +L E ++         D +  
Sbjct: 305 ESEARLEKAYLQNIYKNLPAGIELYDKDGFMT-------DLNEKEMEIFGLRHKEDVIGL 357

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQ-TLHVIVTSNP------- 408
            L     LP+ L  K        + +       D ++  +   T+ +I    P       
Sbjct: 358 NLFDNPLLPQGLKDKLKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLYDALGN 417

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRS 465
               + +  + T   +  +K     +      ++   G A F     DG     N  +R+
Sbjct: 418 LINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDG--YAVNSWYRN 475

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSD 523
           + + E   L+    + +      R         +     +    + + L   GT      
Sbjct: 476 IGEKEGTPLNEIIKVHSHFHPDDRRMMLRFFDQVLIREASHLRRDVRILREDGTYTWTRV 535

Query: 524 SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +V+     P       +    ++T+    ER L    +   + D +K++F+ ++S+E+R+
Sbjct: 536 NVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANMSHEIRT 595

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL  ++       + QY+  +  ++ +LL L++DILDL+ +++G  +   
Sbjct: 596 PLNAIVGFSSLLTETEDMK---DRKQYMAIVQENTELLLQLISDILDLSKMESGAFEFVK 652

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S   +N L  E+ +S+  K+    + +            AD+ RL Q+ S  ++NA+ F+
Sbjct: 653 SDTDVNLLCGEIIRSLRMKVPA-GVELVFEKCLPECHVWADKNRLNQVISNFINNALKFT 711

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             GS  +    + +G   F V++ G  IP +  K+VF+RFV         G GLGLSI +
Sbjct: 712 FSGSITLGYYRQTDGYLRFYVRDIGMGIPRNKIKTVFDRFVKLNSFVH--GTGLGLSICK 769

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           S +   GG + + S +   +      P ++
Sbjct: 770 SLVEQMGGTIGVESEEGEGSCFWFTYPYQD 799


>gi|153871221|ref|ZP_02000448.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072313|gb|EDN69552.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 711

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 151/372 (40%), Gaps = 11/372 (2%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +   +     ++    G+ ++  DG +   NPA+  +            +  +I   
Sbjct: 64  QNLHDSQQNIQYLLNTTLIGLGLWQLDGTLVTINPAYAQMIGRSITETLKLNYWNDIVVE 123

Query: 487 CSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VN 544
            +    ++    L        F+ E +   G    +    L   II         +   N
Sbjct: 124 ENITNEQTQLQVLKVGECYGPFEKEFRHKDGYYVPVK---LSARIIEREGEYYAWSHVEN 180

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ++        L +  +   +A+  K+ F+ ++S+ELR+P+  I+G+T++L+       N 
Sbjct: 181 ISGQKWMIMELKQAKKKAEEANISKSLFLANMSHELRTPMNTIVGYTEMLEEEIKECPNP 240

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              Q ++ I A++  LL LV+ ILD++ ++AG + L      L  ++     +I   + +
Sbjct: 241 NLLQDIKSIHAAAKHLLGLVDGILDISKIEAGKIHLYSERFDLKTMIQNTITTIQPIIEK 300

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIF 721
               +++  D  LG    D  ++ QI   +LSNA  F+ +G  + L+  R          
Sbjct: 301 KANALQISFDEDLGEAYTDLTKVRQILINLLSNASKFTDQG-IITLEVRRQRTQGDWITI 359

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  +  +   ++F  F         +  G GLGL+I + F  + GG + I S   
Sbjct: 360 RVSDEGIGMTNEQQANLFQVFTQADASISRKYGGTGLGLAITKHFTQMLGGTIHIESEFG 419

Query: 780 GVTTINCRIPSK 791
             +    R+P++
Sbjct: 420 KGSHFKVRLPAQ 431


>gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 1269

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 137/319 (42%), Gaps = 10/319 (3%)

Query: 483 IAATCSRYYNESDGWDLFA--AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           + A  ++   E+   +L      + +  +E +     LE  ++ + E ++    N + + 
Sbjct: 500 VIAEEAKQEAETKAQELAQSQEELRATSEELQHRNEALEKHTNEINEVNVRLEQNQEELQ 559

Query: 541 TFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  +   +      +A   L  + E L  A++ K+ F+ + S+E+R+PL  IIG T+ L 
Sbjct: 560 SQQDELKNQNATLEKARLELARRTEQLELANKYKSEFLANTSHEIRTPLNGIIGLTESLI 619

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G LN K    +E I++S+  L  LVNDILD + ++   + +         +++ V 
Sbjct: 620 DGAAGPLNEKTMSNLELINSSAIRLSTLVNDILDFSRMENHELGIQRKPTDFYAIVDVVV 679

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +     + + ++ +       +     D  RL QI   ++ N + F+  G  V L A   
Sbjct: 680 RVSRELIGDKDLVLVNTIGKDIPIIEGDENRLQQILYNLIGNGIKFTESG-QVTLSAKTT 738

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +     SVK+ G  I  +    +F  F     +      G GLGL+I +  + LHGG + 
Sbjct: 739 DAFLSVSVKDTGIGISPESQDRIFESFEQEDGSTSRNYGGTGLGLAISKELVELHGGTIQ 798

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     +     +P  +
Sbjct: 799 LKSEVGKGSEFIFTLPISQ 817


>gi|114800173|ref|YP_759993.1| sensory box sensor histidine kinase/response regulator [Hyphomonas
           neptunium ATCC 15444]
 gi|114740347|gb|ABI78472.1| sensory box sensor histidine kinase/response regulator [Hyphomonas
           neptunium ATCC 15444]
          Length = 655

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/405 (22%), Positives = 159/405 (39%), Gaps = 18/405 (4%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G+ +  ++T    G      E +T   +         ++     DH   G+ V   + RI
Sbjct: 94  GKVMKTVITPTEFGALACSHE-VTELAEERDAALKRFQLARAACDHAIHGIVVTDRESRI 152

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF------DDE 510
              N A   L    E  L  G  +  +    +    ++ G  + + I +        D E
Sbjct: 153 HYVNHAICELIGYSEEELL-GKDVGILFGVKAFQPQKALGNQVVSEIESGKLIRHISDAE 211

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
             +  G    +  S          +   +    +V +  R    L +      +A  +K+
Sbjct: 212 AYTRDGVKIRVQASTSSTHWGEDDDMVFITYIRDVREERRKAHELRDALNRAEQATRLKS 271

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+PL  ++G   +L     G L   Q++ V  I  S   L+ L+NDILDL
Sbjct: 272 EFLANMSHEIRTPLNGVLGMAQVLA---HGKLTEAQAEQVGVILDSGNTLMVLLNDILDL 328

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689
           + ++AG M L+     L   L+ + +      +E  I I++  D  + S  + D  R+ Q
Sbjct: 329 SKIEAGRMDLSPVPGDLRHKLSGLFKLHEAAANEKGIGIRLFVDPSVPSRLLFDPVRVRQ 388

Query: 690 IFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             S +LSNA+ F+S+G  +++  +          I  V + G  I  D    +F  F   
Sbjct: 389 CVSNLLSNAIKFTSQGEVMLVVTSEPVQSGAHRVIMHVSDTGVGIAADKVDRIFESFAQE 448

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                R   G GLGLSI      + GG V+  S     +    + 
Sbjct: 449 DGSTTRKFGGTGLGLSITRRLARMMGGDVTAVSQVGKGSIFTLKF 493



 Score = 41.1 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 56/192 (29%), Gaps = 24/192 (12%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVND----QLTHTYEILHNLTVAIAIFDQNRYLQF 330
           K  K V     FG    + +V++     D    +         +    I + D+   + +
Sbjct: 95  KVMKTVITPTEFGALACSHEVTELAEERDAALKRFQLARAACDHAIHGIVVTDRESRIHY 154

Query: 331 HNRSFVELWEIDLAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            N +  EL       L           +  +    L  Q+  +     +      +E + 
Sbjct: 155 VNHAICELIGYSEEELLGKDVGILFGVKAFQPQKALGNQVVSEIESGKLIRHISDAEAYT 214

Query: 390 DTWHLPNGQTLHVIVTSN-------PRGGTIWMFENLTVQVDLETKYNTLV-------KV 435
                 +G  + V  +++            I    ++  +     +    +       ++
Sbjct: 215 -----RDGVKIRVQASTSSTHWGEDDDMVFITYIRDVREERRKAHELRDALNRAEQATRL 269

Query: 436 QGETIDHLSEGV 447
           + E + ++S  +
Sbjct: 270 KSEFLANMSHEI 281


>gi|121603008|ref|YP_980337.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120591977|gb|ABM35416.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 930

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 120/712 (16%), Positives = 252/712 (35%), Gaps = 79/712 (11%)

Query: 127 LSKATEKLRKEGQS----FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
              A   LR++G      F       +      +G V+G         L    +E     
Sbjct: 97  FEDAVFTLRRKGADEQAWFSFSYAPVDGP----DGTVAG---------LYCNLTETTAKV 143

Query: 183 LKCKKLSNHISVFKVLFDSLD-FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
           L  K           LF+    F+      +     AN +Y +    + +V +      +
Sbjct: 144 LAEKNRQAETRRLYSLFEQAPSFMAVVHGSSHVYELANSAYLRMAGCQDLVGKTFREAVQ 203

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-----------KSYKIVRVLNSF--GE 288
            +  +     +    A  + F      +    +             ++ +   +    G 
Sbjct: 204 GIEDQGYVALLDQVYATGQPFIGNRMPVIFSRHADGPPEQCFVDFIFQPITAPDGVVNGI 263

Query: 289 AGIAIDVSKEITVNDQLTHTY-----------EILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                DV++++   D L  +             +L    VAI + D +      N +  +
Sbjct: 264 FIEGNDVTEQVRTEDDLRKSRIAGLETAQQLNALLQAAPVAIVMADMHGKPLRFNPASRQ 323

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-----YKSSETHKDTW 392
           LW         +P+++ +  +        +       +            +  E  +DT 
Sbjct: 324 LWG-------DHPASESIAGYAERKGWWADGSVRHGCRLEAHEWALARALQGEEAPRDTV 376

Query: 393 HL-PNGQ--TLHVIVT-----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
            + P G+      I+       N  G   G++    +++ +V +E      V       +
Sbjct: 377 EIEPFGKPGIRRTILNCGAPVRNLDGDIIGSVAAQMDISDRVAIEAALRETVTQYRTITN 436

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            + + V    PDG     N  +       ++  + G   + +     +     +     A
Sbjct: 437 AIPQIVWATRPDGYHDYFNQQWYDYTGVPQDS-TVGEGWKGLFHLEDQLQAAKNWRHSLA 495

Query: 502 -AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
                  +   +   G         L     P+ N Q  +     T +   E+ L +  E
Sbjct: 496 TGEPYEIEYRLRHHSGQYRWNLGRAL-----PVRNEQGAIVRWMGTCTDIHEQKLAQ--E 548

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L +AD +K+ F+  +++ELR+PL  I     LL T  L       S+  E IS  +  +
Sbjct: 549 GLLQADRLKDEFLAMLAHELRNPLAPIATAAHLLSTGTLDP--EGLSRLSEVISRQAGHM 606

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L++D+LD++ V  G + L+ + + +N ++ E  + +   +   +  + +    +    
Sbjct: 607 TRLIDDLLDVSRVTWGQVTLDKNPLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQRNLV 666

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             DR RL+Q+ + +L+NA+ ++  G  + L+   D+      V++NG  +  ++    F 
Sbjct: 667 SGDRMRLVQVLANVLNNAVKYTPDGGRITLRVVEDDSHLTVCVRDNGIGMSRELLAIAFE 726

Query: 741 RFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
            F          + G+G+GL++V++ ++LHGG V + S   G  + +   +P
Sbjct: 727 LFTQGERTSDRTQGGLGIGLALVQTLVHLHGGTVRLHSEGAGLGSELTMVLP 778


>gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
 gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
          Length = 827

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 159/378 (42%), Gaps = 18/378 (4%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + L+ K     ++    +    + + +    G+++  N AF S+   + + +        
Sbjct: 315 LQLKEKEKES-ELLATVVKAARDAIVITDHHGKVEWVNKAFESMTGYQLDGIKGLAP--- 370

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
             A         D        +   +  R  +           ++  IIPL N Q ++  
Sbjct: 371 -GAFLQGADTSPDTIADIGKAVRQGEQVRTEILNYTRNKQPYWIDIDIIPLRNEQGVVER 429

Query: 543 V-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                 ++T+  R E  L  +    R+A+E K++F+  +S+E+R+PL  ++G   +L   
Sbjct: 430 FIAIERDITEVKRLESDLETEALKARRANEAKSAFLATMSHEIRTPLNGLLGMLQILNDD 489

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                + +Q + +     S   LL+++NDILDLA V++  + L+     + D++  V+ +
Sbjct: 490 IR---DLEQRKVLRLALNSGEHLLSILNDILDLAKVESDALALDIHPFKMADIITPVEVT 546

Query: 658 IATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                 E  I   V +       +  D  R+ Q+   ++ NA+ F+  G   +   A ++
Sbjct: 547 YQGLCSEKGIVFNVDNHCSDDCYYCGDSVRIRQVLLNLVGNALKFTKTGHINVCIKALES 606

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               F V+++G  IP+D   S+FN F     +   Q  G GLGL+I +  + L  G +S+
Sbjct: 607 PFVEFCVEDSGIGIPQDRMDSIFNEFEQAEVSTTRQYGGTGLGLAICQKLVTLMNGQISV 666

Query: 775 SSSDEGVTTINC--RIPS 790
            S     +       +PS
Sbjct: 667 ESGLGKGSQFRFVISLPS 684



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 10/149 (6%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             L+    EL  + L+ K+      +   +  +    +   D  G + W N +++  T  
Sbjct: 301 RELEKSKRELEGSNLQLKEKEKESELLATVVKAARDAIVITDHHGKVEWVNKAFESMTGY 360

Query: 229 E----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRV 282
           +      +   A  +      + I     +    E+   E ++   +         I+ +
Sbjct: 361 QLDGIKGLAPGAFLQGADTSPDTIADIGKAVRQGEQVRTEILNYTRNKQPYWIDIDIIPL 420

Query: 283 LNSFGEA----GIAIDVSKEITVNDQLTH 307
            N  G       I  D+++   +   L  
Sbjct: 421 RNEQGVVERFIAIERDITEVKRLESDLET 449


>gi|227364326|ref|ZP_03848419.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri MM2-3]
 gi|325683525|ref|ZP_08163041.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A]
 gi|227070639|gb|EEI08969.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri MM2-3]
 gi|324977875|gb|EGC14826.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A]
          Length = 598

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 161/416 (38%), Gaps = 31/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   ++  +     + 
Sbjct: 187 EEMRKQTLRIARGDYSGQVKVLGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLDSILS 246

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N     L   E      G  I ++      Y           
Sbjct: 247 HMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDVLDIRHDYTVRQLVNGEQR 306

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +I    +   +L          +L     P+      ++ +         +        
Sbjct: 307 EMIIDMSNSGNNL----------ILNAYFSPIQRESGFVSGLVCVLHDVTSQQ------- 349

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L             Q+++ +   +  ++
Sbjct: 350 --KEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAWQD-KEIAPQFLKVVQDETDRMI 406

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI------RIKVISDG 675
            ++ND+L L+ +DAG  KLN   + +N+L N +       + +          I+     
Sbjct: 407 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 466

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP    
Sbjct: 467 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDL 526

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A   ++ G GLGL+I +  IN+ GG + + S +   +T    +P
Sbjct: 527 GRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582



 Score = 38.0 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + + + +      IL +++  +   D+   +   N   ++L  ++        S  ++
Sbjct: 229 EAQESSDSERRRLDSILSHMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDV 288

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----G 410
           L+ +R    + + +N            +  E   D  +  N   L+   +   R      
Sbjct: 289 LD-IRHDYTVRQLVN-----------GEQREMIIDMSNSGNNLILNAYFSPIQRESGFVS 336

Query: 411 GTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
           G + +  ++T Q   E            +  T +      ++ LS+G
Sbjct: 337 GLVCVLHDVTSQQKEERERKQFVSNVSHELRTPLTSVRSYVEALSDG 383


>gi|114848882|gb|ABI83649.1| chromatic acclimation sensor [Synechocystis sp. PCC 6803]
          Length = 753

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 97/518 (18%), Positives = 202/518 (38%), Gaps = 42/518 (8%)

Query: 293 IDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +++S+       L HT   L +L       I   +    +Q  N +   ++      +  
Sbjct: 247 MEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQIWNPTAERIFGWTETEIIA 306

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           +P        L ++N L E  +++ +K+ + S   S  + +      +G  + +++++ P
Sbjct: 307 HPE-------LLTSNILLE--DYQQFKQKVLSGMVSP-SLELKCQKKDGSWIEIVLSAAP 356

Query: 409 R-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF------GPDGR 455
                    G + +  ++T Q     +   L       + + ++ V +        P  R
Sbjct: 357 LLDSEENIAGLVAVVADITEQKRQAEQIRLL----QSVVVNTNDAVVITEAEPIDDPGPR 412

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           I   N AF  +       +   T                   D     I+ +      + 
Sbjct: 413 ILYVNEAFTKITGYTAEEMLGKTP-----RVLQGPKTSRTELDRVRQAISQWQSVTVEVI 467

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNS 571
              +  S+  +E+S++P+ N     T          ER     +    E  ++   +K  
Sbjct: 468 NYRKDGSEFWVEFSLVPVANKTGFYTHWIAVQRDVTERRRTEEVRLALEREKELSRLKTR 527

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDL 630
           F    S+E R+PL+  +    LL+ S++  L+  K+S+ +  I  S   ++ L++DIL +
Sbjct: 528 FFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILII 587

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
              +AG ++ N + + L  L  +  + I   + +       I   +    + D + +  I
Sbjct: 588 NRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSD-QYYFDFICSAQDTKALVDERLVRSI 646

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            S +LSNA+ +S  G  + +  + D+   IF V + G  I  +  K +F  F    +   
Sbjct: 647 LSNLLSNAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFEPFHRGKNVRN 706

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL + +  ++LH G + + S+ +  TT+   +
Sbjct: 707 ITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICL 744



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 89/287 (31%), Gaps = 40/287 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN---TETEG 230
           +  E++E       L +     + L  +    ++  + A  I   N + ++    TETE 
Sbjct: 245 LRMEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQIWNPTAERIFGWTETEI 304

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS----- 285
           I   + +  +  L ++  + +    S +     E     + G+    +IV          
Sbjct: 305 IAHPELLTSNI-LLEDYQQFKQKVLSGMVSPSLELKCQKKDGS--WIEIVLSAAPLLDSE 361

Query: 286 ---FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF------DQNRYLQFHNRSFV 336
               G   +  D++++    +Q+     ++ N   A+ I       D    + + N +F 
Sbjct: 362 ENIAGLVAVVADITEQKRQAEQIRLLQSVVVNTNDAVVITEAEPIDDPGPRILYVNEAFT 421

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK--SSETHKDTWHL 394
           ++       +                  L      +T  + +        S T +   + 
Sbjct: 422 KITGYTAEEMLGKTP-----------RVLQGPKTSRTELDRVRQAISQWQSVTVEVINYR 470

Query: 395 PNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVK 434
            +G    V  +  P           I +  ++T +   E     L +
Sbjct: 471 KDGSEFWVEFSLVPVANKTGFYTHWIAVQRDVTERRRTEEVRLALER 517


>gi|295707318|ref|YP_003600393.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM
           319]
 gi|294804977|gb|ADF42043.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM
           319]
          Length = 635

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 151/386 (39%), Gaps = 28/386 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + H+++GV      GR+ L N    ++  
Sbjct: 266 GQLALTFNNLTRKLQEAQATTEGERRKLSSVLAHMTDGVIATDRKGRVILINDPAAAMLN 325

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLE 527
                +     +  +         + +    F +++ +    ++SL       SD  +L 
Sbjct: 326 VSRETVLSDPVVSLL---------DLEETHTFESLLAN----QESLILDFSTKSDPFILR 372

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +I  +      +  + +      E+          K D+ +  FV +VS+ELR+PLT +
Sbjct: 373 ATISAIQKETGFINGIIIVLHDITEQE---------KIDQDRREFVANVSHELRTPLTTM 423

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + D L        +     ++      +  ++ LVND+L L+ +D+   + +   I  
Sbjct: 424 RSYLDALAEGAWQDKD-LAPTFLNVTQTETERMIRLVNDLLQLSKLDSQDYRFSRDPINF 482

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
               + +       + +  I        +      D+ ++ Q+   I+SNA+ +S +G  
Sbjct: 483 VKFYHYIIDRFEMTIEQ-GISFVRDLPNEAIYVAIDQDKITQVLDNIISNAIKYSPEGGI 541

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           +    A+   + + S+K+ G  IP+     +F RF        R   G GLGL+I +  I
Sbjct: 542 ITFSIAQHTHEIVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKLGGTGLGLAIAKEII 601

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
             H G +   S +   TTI   +P +
Sbjct: 602 EAHDGRIWADSQEGKGTTIYFTLPIE 627


>gi|170758751|ref|YP_001785673.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405740|gb|ACA54151.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 615

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 172/390 (44%), Gaps = 14/390 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + +  N   Q +++ +    + ++ E      I +  + + V    G+I  +N   + + 
Sbjct: 198 VNILANKLDQKEMQKRCMEQLLMKNENCYNLLIRNSKDAILV-HRYGKIIFANERLKQML 256

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSV 525
             ++        I+++         +    +L++    I  F+    + +G     + + 
Sbjct: 257 GYKKEYNFEDIDIKSLIPEDQYNIVKDQLKNLYSGSEDIVKFEHNVINNKGKTIQNTSTY 316

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELRS 582
           + Y  +P   +  +    +     + E+ + +  E L +    +++   F+ ++S+EL++
Sbjct: 317 VIYDGVPTIFS-ILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHELKT 375

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I     LL   +    + KQ +Y++ I  +   L+ L+N++LD   +D+G +KLN 
Sbjct: 376 PLNVIFTAVQLLGFYEEDCNDEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNL 435

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               + +L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSN++ F+
Sbjct: 436 VNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKFT 495

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
           + G  + +       +    VK+ G  IP D  +S+F RF          + G G+GL +
Sbjct: 496 NPGGNIFVNVKDSGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLHL 555

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
           V+SF+ +H G V+I S     T    ++P+
Sbjct: 556 VKSFVEMHKGTVTIKSELGKGTEFIIKLPA 585


>gi|167630809|ref|YP_001681308.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593549|gb|ABZ85297.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 1200

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 11/253 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R +  L    +   +A  +K+ FV ++S+E+R+P+  I+G  +LL  +    L++
Sbjct: 623 FIERKRVQDELARTRDQALEASRLKSEFVANMSHEIRTPMNAIMGMNELLLET---DLDA 679

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  +   +  S+  LL ++NDILD + ++AG M ++ +   L D +  +   ++    +
Sbjct: 680 QQRDFAVIVRESAEGLLRIINDILDFSKLEAGKMTIDETEFRLVDTVETIADMLSVGARK 739

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----D 718
             + +    D  + + +  D  RL Q+   +  NA+ F+ +G   IL    D        
Sbjct: 740 RGLALSTFIDPAIPAVLRGDEGRLRQVLLNLGGNAVKFTEQGGVTILITPDDPPGVSLLR 799

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V + G  +     + +F  F        R   G GLGLSI    I L GG + + S
Sbjct: 800 LRFEVIDTGIGLSPVARQRLFQPFTQADGSTTRKYGGTGLGLSISRRIIELMGGEIGVES 859

Query: 777 SDEGVTTINCRIP 789
                +T    +P
Sbjct: 860 EFGRGSTFWFTVP 872


>gi|159897998|ref|YP_001544245.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
            23779]
 gi|159891037|gb|ABX04117.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
            23779]
          Length = 1380

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 136/788 (17%), Positives = 275/788 (34%), Gaps = 102/788 (12%)

Query: 89   KDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148
             D+   I   L  R         ++ FE  L+    I        LR     F + A+  
Sbjct: 345  PDDHAIIRKVLQGRTVTSSDPQLIVDFECRLRSPEGI---YRYFALRMT--PFVIDADGT 399

Query: 149  NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
                + +   ++      + +       E      + ++L+      + +      ++  
Sbjct: 400  VSQLLGVASDITERKLQEQQIRQLNEQLEQ-RVIERTQELAQSYRFQRTMIQHAPSIIIS 458

Query: 209  RDQAGDILWANISYK-----KNTETEGIVFQKAI--------------GESRKLFKEEIK 249
             D  G +   N + +     + TE  G  F   +                +R LF  ++ 
Sbjct: 459  LDAGGVVRGFNRAAEFEFGYQETELLGRPFPTKLFDRSDLRYRWETEQHRNRGLFYSDLD 518

Query: 250  KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS-----FGEAGIAIDVSKEITVNDQ 304
              +  +        E  +    G+    ++            G   I  +++      ++
Sbjct: 519  ILLAEARRGVAEPHEWQAIHRSGSRFPLELTITPLLHADVLEGFLLIGNNIAARKRTEEE 578

Query: 305  LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR---- 360
                Y    +++ A A F+    +   N      W++ +A++     +   L  +R    
Sbjct: 579  FHLLYRTTRSVSEA-ADFNSALEVVLRNICAAIGWDLSVAWVPDANQDFLALAPIRWSSN 637

Query: 361  ----------SANKLPEQ--LNWKTWKENIFSVYKSSETHKDTWHL-------------- 394
                       + +LP+   L  + W+    + Y     H    +L              
Sbjct: 638  ERFQHFYTYLQSLELPQGAGLAGRVWQTKHSANYAIEHDHWTEGNLNQRGYELAQQVGLQ 697

Query: 395  --------------------PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
                                 + + +    T+N           L  +   E +      
Sbjct: 698  SAVAVPILANDQVVAILEFFRSSRGVDHERTTNLISVIATQLGTLFQRKHAEMQLRQSEA 757

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +  + + +  F   G I          + T +           I A    +  + 
Sbjct: 758  KNRALLAAMPDLMIRFTLKGEILD--------YHTNDPSDLFLPQDAMIGANAHNHQPQP 809

Query: 495  DGWDLFAAIITSFD-DERKSLQGTLELLSDS-VLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
               ++ +A   + + +  ++++  L L   + V E  I P  N + ++   N+T+  R E
Sbjct: 810  QILNIMSATQRAIETNSTQNVEYELTLPKGNTVFEARIAPSANDEVVMVIRNITERKRIE 869

Query: 553  R-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +        L+  N  L KA  +K+ F+  +S+ELR+PLT I+ FT+ L+  + G+LN  
Sbjct: 870  QTLQQQTDELSIANAELAKAARLKDEFLASMSHELRTPLTGILAFTEALRYDQYGALNQA 929

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q+Q ++ I  +S  LL+L+NDILDL+ ++AG + +N+ +++++++     + +       
Sbjct: 930  QAQALQQIDENSRHLLDLINDILDLSKIEAGKLTINHQSMLIDEICQASIRMVQKLAQNK 989

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSV 723
             + +            AD +RL Q+   +LSNA+ F+  G  + L    D+       +V
Sbjct: 990  QLELLYEPCAADAMLCADSRRLKQMLVNLLSNAVKFTPAGGRIGLSVKLDSQFHQVELTV 1049

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G  I       +F  F         Q  G GLGL++V    NLHGG V + S     
Sbjct: 1050 WDTGIGINTQDIPKLFRPFSQLDSKLSRQYAGTGLGLALVYHMANLHGGRVELQSEVGVG 1109

Query: 782  TTINCRIP 789
            +     +P
Sbjct: 1110 SQFRLVLP 1117



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 83/590 (14%), Positives = 177/590 (30%), Gaps = 79/590 (13%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
            L ++V+   + L  +    +K  +L+       ++W        I+        + Q  
Sbjct: 13  QLKQQVSLLETELQHVRSHTAKLQALIDHTES--LIWSIDSSQHLIMSNRTFHDYLHQWY 70

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIK----IEGR------- 158
              +           + L K   K   E     L  E      +                
Sbjct: 71  DQHIELGQ---PMSMLHLPKPIAKPWNEAYRRALQGEAFAQEFVHHYAGATRYYEFHFAP 127

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           +      ++ +++ G   +++   L    L +  + ++ + ++  + V+  D  G  ++A
Sbjct: 128 ILDEQRVVQGVNISG--RDISSRRLAEVMLRSSEARYRAINEAAPYGVFFCDTQGQCVYA 185

Query: 219 NISYKKNTETE-GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
           N +     E +   V   A  E          +    + AL  N     S L     + +
Sbjct: 186 NTALLHMLEVKLEDVLGDAWMEFLHPKDASDSESFWHNLALSVNQQPIPSVLFDQTVRLH 245

Query: 278 --------------KIVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAI 319
                          ++      G  GI  D+S     E     +     +I   L   +
Sbjct: 246 TKLNQLIWLRLRISPVIEAGVLCGFVGITDDLSALKKAETAAQAKQHFIQKIADTLPSQL 305

Query: 320 AIFDQ-NRYLQFHN---RSFVELWEIDLAFLAT-----NPSNDELLEFLRSANKLPEQLN 370
            I+D+ +  L + N   R + + + ID + + T     +P +  ++  +     +    +
Sbjct: 306 FIYDRASASLIYTNEVSRQWFKSFNIDPSDMNTIRPLFHPDDHAIIRKVLQGRTV--TSS 363

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
                 +     +S E     + L    T  VI         + +  ++T +   E +  
Sbjct: 364 DPQLIVDFECRLRSPEGIYRYFALR--MTPFVIDADGTVSQLLGVASDITERKLQEQQIR 421

Query: 431 TLV------------------KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            L                   + Q   I H    +      G ++  N A    +  +E 
Sbjct: 422 QLNEQLEQRVIERTQELAQSYRFQRTMIQHAPSIIISLDAGGVVRGFNRAAEFEFGYQET 481

Query: 473 RLSPGTHIRNIAATCS-RYYNESDGW----------DLFAAIITSFDDERKSLQGTLELL 521
            L        +      RY  E++            D+  A       E    Q      
Sbjct: 482 ELLGRPFPTKLFDRSDLRYRWETEQHRNRGLFYSDLDILLAEARRGVAEPHEWQAIHRSG 541

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           S   LE +I PL +A  +  F+ + +++ A +   E+   L +     + 
Sbjct: 542 SRFPLELTITPLLHADVLEGFLLIGNNIAARKRTEEEFHLLYRTTRSVSE 591


>gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1141

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 168/422 (39%), Gaps = 51/422 (12%)

Query: 416 FENLTVQVDL-ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +  QV L ET+     +      +   EG+ +      I   N  F  +    E  L
Sbjct: 209 FNEMAEQVRLRETELRESEEKYRRLFETSIEGIVMIDVTEHIFEVNRIFADMLGYSEEEL 268

Query: 475 ------------SPGTHIRNIA-------ATCSRYYNESDGWDLFAAIITSFD-DERKSL 514
                           H + IA       +   R     DG +++  I  S   D R   
Sbjct: 269 VGKFVPDLIHGEDQKNHEKEIALRRAGHASQYERRLARKDGSEVWTMISASPQFDARGEF 328

Query: 515 QGTLELLSDSV---------------LEYSIIPLP---NAQTMLTFVNVTDSVRAERALT 556
            G   +++D                 LE  ++      N    L    +    + E+ + 
Sbjct: 329 NGVFAMITDITPLRIAQANLKTAYDELEKRVVERTDELNKTNRLLTSEIHIRKQTEKEII 388

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  EA  KA   K+ F+ ++S+E+R+P+  IIG T L+K ++   L++ Q  Y+  I  S
Sbjct: 389 KAKEAAEKATLAKSEFLANMSHEIRTPMNAIIGMTHLIKMTE---LSATQRDYLNKIDIS 445

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DG 675
           +  LL ++ND+LDL+ ++AG++ +      L  +L ++   ++ + +E  +   +     
Sbjct: 446 AKSLLGIINDVLDLSKIEAGMLTVESVGFKLEQVLEQLTTIVSPRANEKKLEFLISVGKD 505

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIP 731
              +   D  R+ QI   + +NA+ F+ +GS V     L+   D     F+VK++G  I 
Sbjct: 506 VPPAIQGDPMRMAQILINLCNNAVKFTDEGSVVVGISTLEKDADKARLRFTVKDDGIGIK 565

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CR 787
               + +F  F        R   G GLGLS+ +  ++L GG +   S     +       
Sbjct: 566 PGKIQELFQPFTQADASTTRKYGGTGLGLSLCKQLVDLMGGEIGAESEFGKGSLFWFEVT 625

Query: 788 IP 789
            P
Sbjct: 626 FP 627



 Score = 42.6 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 21/158 (13%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  + +       +       I + D   ++   NR F ++       L        + 
Sbjct: 219 RETELRESEEKYRRLFETSIEGIVMIDVTEHIFEVNRIFADMLGYSEEEL--------VG 270

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------- 409
           +F+       +Q N +  KE        +  ++      +G  +  +++++P+       
Sbjct: 271 KFVPDLIHGEDQKNHE--KEIALRRAGHASQYERRLARKDGSEVWTMISASPQFDARGEF 328

Query: 410 GGTIWMFENLT----VQVDLETKYNTLVKVQGETIDHL 443
            G   M  ++T     Q +L+T Y+ L K   E  D L
Sbjct: 329 NGVFAMITDITPLRIAQANLKTAYDELEKRVVERTDEL 366


>gi|256838871|ref|ZP_05544381.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739790|gb|EEU53114.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 882

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 169/371 (45%), Gaps = 24/371 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L+ K   L K     ++++   +    PD  +K  N         E    +       +
Sbjct: 390 KLKDKLLDLQKDNILIMNNIQASIYFIKPDYTVKWRNEVEFHDCIPEFGPANCFLVKNGV 449

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----T 538
              C+R              +    + +K +  T E      L     P+ +        
Sbjct: 450 KPYCTR------------CTVAKAMETKKQVDITNEFGDGKYLHILANPVLDEHNNLIGV 497

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++
Sbjct: 498 IFKKEDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE 557

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                  + +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS 
Sbjct: 558 NM---EDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSS 614

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K  +  +++  +          DR R+ Q+ +  ++NA+ F+++GS ++    R + +
Sbjct: 615 RLKAQD-GVQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRRRDDE 672

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S  
Sbjct: 673 LYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQ 730

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 731 GKGSTFWFTLP 741


>gi|150010061|ref|YP_001304804.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938485|gb|ABR45182.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 882

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 169/371 (45%), Gaps = 24/371 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L+ K   L K     ++++   +    PD  +K  N         E    +       +
Sbjct: 390 KLKDKLLDLQKDNILIMNNIQASIYFIKPDYTVKWRNEVEFHDCIPEFGPANCFLVKNGV 449

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----T 538
              C+R              +    + +K +  T E      L     P+ +        
Sbjct: 450 KPYCTR------------CTVAKAMETKKQVDITNEFGDGKYLHILANPVLDEHNNLIGV 497

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++
Sbjct: 498 IFKKEDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE 557

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                  + +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS 
Sbjct: 558 NM---EDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSS 614

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K  +  +++  +          DR R+ Q+ +  ++NA+ F+++GS ++    R + +
Sbjct: 615 RLKAQD-GVQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRRRDDE 672

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S  
Sbjct: 673 LYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQ 730

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 731 GKGSTFWFTLP 741


>gi|260662553|ref|ZP_05863448.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
 gi|260553244|gb|EEX26187.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
          Length = 619

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 161/417 (38%), Gaps = 34/417 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   +   +     + 
Sbjct: 211 EEMRKQTLRIARGDFSGQVKVMGNDELGQLAGAVNNLSVRVEESQESSDAERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N          +     G  I ++     ++           
Sbjct: 271 HMSDGVLATDRRGNLTIVNNTALQFLNIADEEQVLGKSILDVLKIRRQFS---------- 320

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             I    DE +       L  D +L     P+      ++ +         +        
Sbjct: 321 --IRHLVDEDQDQVILDNLNEDLILSAYFSPIKRESGFVSGLVCVLHDVTSQQ------- 371

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L    +        +++  +S  +  ++
Sbjct: 372 --KEERERKEFVSNVSHELRTPLTSVKSYVEALSDGAIND-PELAPRFLGVVSDETERMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-------ENNIRIKVISD 674
            ++ND+L L+ +D+G  KLN   + +N+L N +       +        +    I     
Sbjct: 429 RMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYLT 488

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP   
Sbjct: 489 KKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKD 548

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF  V  A   ++ G GLGL+I +  +NL GG + + S +   +T    +P
Sbjct: 549 LGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|220925321|ref|YP_002500623.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219949928|gb|ACL60320.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 782

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 150/789 (19%), Positives = 272/789 (34%), Gaps = 116/789 (14%)

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
           +L  +               I+G         Q        E+WL+F     L      L
Sbjct: 1   MLEADPAPL-----AARAATILGIARAITPAHQRLARA---ESWLRFAIPAILGLFLISL 52

Query: 135 RKEGQSFDLVAE---TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
                 F + A     Q   A+   GR     A L   SL     E +E  L     ++ 
Sbjct: 53  ------FAITATQLLAQRRDAVAEAGRQIDLLARLVAASLSSTAPE-SELRLDGAVPASA 105

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
           +   +         V+       I     +        G      +GE++ L     +  
Sbjct: 106 LVAGRA--------VYLIGPDDRI----AASLPALLPPGHRLADHLGEAQPLLILGERAG 153

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKI-----------VRVLNSFGEAGIAIDV----- 295
           +++++        T+  L  G  +   +            R        G A  V     
Sbjct: 154 VMTATLGGAPALATLRALPSGRGRVAVVQSLDTATADWRSRARTEAVVIGTATLVIVCVG 213

Query: 296 ---SKEITVNDQLTHTYEILHN-LTVAIAIFDQNRYLQFHNRSFVELWEIDLAF--LATN 349
              + +      +    E +   L  A+             R    LW+ D+A   +  +
Sbjct: 214 LAYTLQADRARTVDRVCEQVRQRLDTALC------------RGRCGLWDWDIARGRIYWS 261

Query: 350 PSNDELLEFLRSANKL----------PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
            S  +LL ++R    L          P+  +         +   ++  H+       G+ 
Sbjct: 262 DSMYQLLGYVREHEFLSFGDVNALVHPDDTDLYGLASQ-LAAQDATVDHEFRIRSAAGEW 320

Query: 400 LHV-----IVTSNPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           + +     IV     GG   + +  +++ Q  L     T      + ++ +SE   ++  
Sbjct: 321 IWLKARAEIVRDQDDGGRHLVGIIIDISEQRRLAESTATADMRLRDAVEAVSEAFVLWDA 380

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIITSFD-- 508
             R+ L N  FR L         PG     I   A       E    DL      +F+  
Sbjct: 381 QNRLVLCNSKFRRLHALTLEEAQPGRRYDAIMGRAAVPAVRREIPNTDLAELGARTFEAE 440

Query: 509 ---------DERKSLQG----------TLELLSDSVLE------YSIIPLPNAQTMLTFV 543
                     ER++  G          TL+   + ++E       +I  L  ++  L   
Sbjct: 441 LADGRWLQISERRTKDGGYVSVGTDITTLKRHQERLVESERQLIATIADLKRSRRTLELQ 500

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
               +  AER L ++      A+  K+ F+ ++S+ELR+PL  I+GF ++++    G L 
Sbjct: 501 TQQLADLAERYL-DQKAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGQLG 559

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + K  +Y   I +S   LL++++DILD++ ++A  + L    + + + L    + IA   
Sbjct: 560 SEKYREYCRDIRSSGHYLLSVIDDILDMSRIEARRVTLVKQPVPVAEALERALKLIAEPA 619

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               + + V         +AD + L QI   +L NA+ F+ +   V ++  R        
Sbjct: 620 RAKGLTLSVEMSAD-AVVLADERALHQILVNLLQNAVKFTPEAGRVAVRTRRALDAVHIF 678

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  IP+ +   +   F           +G GLGL+I  S   LHGG + I S    
Sbjct: 679 VEDSGIGIPKAVLPKLGAPFEQVESNFSRSFKGSGLGLAISRSLTELHGGRLRIRSEVGC 738

Query: 781 VTTINCRIP 789
            T +  R+P
Sbjct: 739 GTIVLVRLP 747


>gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 956

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/573 (17%), Positives = 207/573 (36%), Gaps = 66/573 (11%)

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
           R            +    + +G  ++ ++V         G   DV+      + L  +  
Sbjct: 257 RFRRGDGSYAVIYDRGYLVRNGEGRALRMV---------GAMQDVTARQAAEEALRQSES 307

Query: 311 ILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLA---------FLATNPSNDELLE 357
               L       +  +  +  +   N + + L  +            +   +P N E ++
Sbjct: 308 RYRRLIDAGIFGMLEWKADGLVTAINDALLGLLGLTREAALKPGFTFWRLLSPENPEAMK 367

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTI 413
            L+    LP                      +  +  P+G  + ++++       R   +
Sbjct: 368 GLKETGVLP--------------------PFEAQYLRPDGGQVDLLISGFTLDEGRERGL 407

Query: 414 WMFENLT-------VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            +  + T        +  L  K            DH    + V          +  +   
Sbjct: 408 ALVLDTTRLKAVQAERERLMVKLQESETRFRNMADHAPVMLWVTDASAYCSYLSKGWYDF 467

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
               E        +  +    ++  +++        +    D   +   G    L DS  
Sbjct: 468 TGQTEETGLGFGWLSVVHPDDAKRSSDAFLAANAKRVPFRIDYRLRRRDGAYRWLIDSGS 527

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYE 579
                       + + +++T+  +AE              +  ++A+ +K+ F+  VS+E
Sbjct: 528 PRFGPDGEFLGYIGSLLDITERKQAEDEREGLLARESAARQEAQEANRLKDEFLATVSHE 587

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT ++G+  +L+T  L +   K ++ +E +  ++     L+ D+LD++ + +G ++
Sbjct: 588 LRTPLTAMLGWVQMLRTGNLPA--GKHARALETVERNARAQSQLIEDLLDVSRIMSGKLR 645

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L+   + ++ ++    +S+       +IR++   D      + D QRL Q+   +LSNA+
Sbjct: 646 LDVEPVEVSVVVEHALESVRPAADAKHIRLQAAVDST-SHVMGDAQRLQQVVWNLLSNAV 704

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            F+ KG  V +   R +     +V + G  I       VF+RF        R   G+GLG
Sbjct: 705 KFTPKGGRVQVFVERRDSSVDITVADTGHGIAAKFLPHVFDRFRQADGSTTRSAGGLGLG 764

Query: 758 LSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
           LSIV   + LHGG VS  S  +    T    +P
Sbjct: 765 LSIVRQLVELHGGTVSAFSEGEGKGATFTVTLP 797



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 73/267 (27%), Gaps = 28/267 (10%)

Query: 59  YSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENW 118
            +    +    S+Y  L+       + W        I   L   + + +       F  W
Sbjct: 296 QAAEEALRQSESRYRRLIDAGIFGMLEWKADGLVTAINDALLGLLGLTREAALKPGFTFW 355

Query: 119 --LKFHHYIKLSKATEKLRKEGQ--SFDLVAETQNDCAIKI--------EGRVSGSCAFL 166
             L   +     +A + L++ G    F+      +   + +        EGR  G    L
Sbjct: 356 RLLSPEN----PEAMKGLKETGVLPPFEAQYLRPDGGQVDLLISGFTLDEGRERGLALVL 411

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
               L  + +E         KL    + F+ + D    ++W  D +    + +  +   T
Sbjct: 412 DTTRLKAVQAERERL---MVKLQESETRFRNMADHAPVMLWVTDASAYCSYLSKGWYDFT 468

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS---TLEHGNNKSYKIVRVL 283
                        S     +  +      +A  K     +        G  +        
Sbjct: 469 GQTEETGLGFGWLSVVHPDDAKRSSDAFLAANAKRVPFRIDYRLRRRDGAYRWLIDSGSP 528

Query: 284 NSF------GEAGIAIDVSKEITVNDQ 304
                    G  G  +D+++     D+
Sbjct: 529 RFGPDGEFLGYIGSLLDITERKQAEDE 555


>gi|240141036|ref|YP_002965516.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens AM1]
 gi|240011013|gb|ACS42239.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens AM1]
          Length = 803

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/517 (18%), Positives = 200/517 (38%), Gaps = 25/517 (4%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           G+  + +   K       +     +   L     I + +  L ++NR + +      A +
Sbjct: 8   GDITVTVQDGKVPETGPTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM 67

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIV 404
           A +              KL    + +   E   S   + E+ +DT+ L   +G+    + 
Sbjct: 68  ADH-----------GWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGRYRWFLS 116

Query: 405 TSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            + P     G  +  +    ++T     +       +     +D  +  +      G + 
Sbjct: 117 MAEPVRNAEGTVLRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELM 176

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              P++ +     +        I  I         E     +    +   +   +     
Sbjct: 177 PPQPSWAAYTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEV 236

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              +    +          + +   +++T    AE A+     A   A+  K+ F+ ++S
Sbjct: 237 WRDMEVRGVPVLAEDGSIREWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMS 296

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL+ +IG++++L         ++    +  I +S+  LL L+ND+LD++ ++AG 
Sbjct: 297 HELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGR 356

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + L   T  +  L+ +V  +  + + +   R ++  +G LG+   D+ +L Q    ++ N
Sbjct: 357 LTLAAETFDVVSLIEDVTAATQSLITKKRNRFRLDFEGDLGAMHQDQSKLRQSLINLIGN 416

Query: 698 AMDFSSKGSTVI-LKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           A  FS  G  ++ ++  R+ G     FSV + G  + ++    +F RF        R   
Sbjct: 417 AAKFSEDGEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFG 476

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+I  +F+   GG + + S+     T   R+P
Sbjct: 477 GTGLGLAITRAFVERMGGTIGVESTFGAGATFTIRLP 513



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 85/249 (34%), Gaps = 23/249 (9%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK--EEIK 249
           ++ F+ L D+L  L W  +  G ++W N  +   T T                   E   
Sbjct: 26  MADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEMADHGWRKLHHPDHLERAA 85

Query: 250 KRMISSSALEKNFCETVSTL-EHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVN 302
           +R  S  A  +++ +T     + G  + +      V N+ G      G   DV++     
Sbjct: 86  ERFASCIAAGESWQDTFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNTDVTETRLAQ 145

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE------LL 356
           D L H+ +         A+ D +  + +   +  EL     ++ A    +DE       +
Sbjct: 146 DALGHSEQRFR------ALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGWGWI 199

Query: 357 EFLR--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + +      ++ E       +  +F V      H + W     + + V+         + 
Sbjct: 200 DAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSIREWVG 259

Query: 415 MFENLTVQV 423
           +  ++T + 
Sbjct: 260 LNIDITARK 268


>gi|254423157|ref|ZP_05036875.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196190646|gb|EDX85610.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1125

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/645 (17%), Positives = 248/645 (38%), Gaps = 58/645 (8%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD-ILWAN-ISYKKNTETEGIV 232
            +++A    + +         K+   +     W  D     +  +N   Y      E  +
Sbjct: 361 RTQIASLIRQKRAAKEARRQLKLALATGRIGTWEIDLKTQTLTASNQHKYNYGLPAEADL 420

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV----RVLNSFGE 288
             + +         +       ++  +    +    L   +   + ++    RV +  GE
Sbjct: 421 TYEIVQSRIHPSDCDRVTAAYQATISQGIGFDEEYRLVWADGSIHWLISRAERVCDETGE 480

Query: 289 A----GIAIDVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWE 340
           A    G++IDV++            +   ++       +     +  L + N   ++L  
Sbjct: 481 ADRLIGVSIDVTERKQAEQAAKVGGQRFRDVAESNLFGVVFGTLSGELSYANDYVLDLLG 540

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS---ETHKDTWHLPNG 397
                LA++         +R     P    +    +   +  + +   E ++  +   +G
Sbjct: 541 YRAHELASH--------QVRWDQITP--AEFALADQAAINQLRETGTCEPYEKAFRHKDG 590

Query: 398 QTLHVIVTSNPRGGT-------IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             + V+V +             +    +LT    +  + +   ++         +  AV 
Sbjct: 591 SKVPVLVAATLLQQVADQSQEVMAFILDLTRLKQVTEERDRFFRLS-------PDMHAVG 643

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             +G     NPA+  +     + L+   ++  I      + ++ +     AA +T+ +D 
Sbjct: 644 NFEGYFTQVNPAWVKVLGYTSSELTAQPYLFFI------HPDDREMTAAIAANLTASEDP 697

Query: 511 RK-SLQGTLELLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +   +   +  S   L + +  L    +      ++T   +         EA  +A+ I
Sbjct: 698 IEFENRYRCKDGSYRWLLWKVTALIAEGRFYAVARDITTRKQVALEREAAREAAERANRI 757

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYISASSTILLNLVNDI 627
           K+ F+  VS+ELRSPL  I+G++ LLK    G+L+ K+++  +  I  ++ + + L+ D+
Sbjct: 758 KDEFLAVVSHELRSPLNPILGWSQLLKR---GTLDEKRTKLALASIERNAQLQVQLIGDL 814

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ +    + L+ + + L  ++    +++     E +I I+        + V D  RL
Sbjct: 815 LDISRILRNKLILDKAPVDLESIIFAALETVKQATAEKSIHIETTI--TPCTVVGDAVRL 872

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +LSNA+ F+ +  ++ +    D  + +  V + G  I  D    VF  F    +
Sbjct: 873 QQVVWNLLSNAVKFTPRDGSITVTVTADVSEVVIEVSDTGKGIAADFLPFVFEHFRQENY 932

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
              R   G+GLGL+IV   ++LH G V++ S  +   TT +  +P
Sbjct: 933 STTRKFGGLGLGLAIVRQIVDLHDGTVAVRSPGENQGTTFSVCLP 977


>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1346

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 17/258 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N       E+ L +  E    A + K+ F+ ++S+E+R+P+  +IG TDLL  ++   L 
Sbjct: 605 NAQLRQSREQDLKDAMEQAEIATQAKSEFLANMSHEIRTPMNGVIGMTDLLLDTE---LR 661

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q    E I +S   LL L+NDILD + ++AG ++L      L+ LL ++   +A +  
Sbjct: 662 PEQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVNFNLHYLLEDLASLMAVRAD 721

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------- 712
           E  + +  + D  + +    D  RL QI + ++ NA+ F+ +G  V++            
Sbjct: 722 EKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQGEVVVMVQKSEARSQKSD 781

Query: 713 -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
            + D+   +F+V++ G  +PED    +FN+F        R   G GLGL+I      + G
Sbjct: 782 NSADDVLLLFTVQDTGIGVPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMG 841

Query: 770 GHVSISSSDEGVTTINCR 787
           G V + S           
Sbjct: 842 GEVGVQSEYGRGCKFWFT 859



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 80/266 (30%), Gaps = 31/266 (11%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI--VFQKAIGESRKLFKEEIKKRMI 253
           + + D     ++     G  ++AN +  +         +       + +LF + ++   +
Sbjct: 23  QDILDKATIGIFKTTLEGRFIYANRALAEIFGYSSPRDLIASVTDIATQLFADPVQWEEV 82

Query: 254 SSSALEKNF---CETVSTLEHGNNKSYK-----IVRVLNSFGE-AGIAIDVSKEITVNDQ 304
                        E       G           +           G   D+S      DQ
Sbjct: 83  RHLLDLHGIVKNYECRQIRRDGTVFWASGSIQAVTDAKGKASHFQGFVSDISDRKLAQDQ 142

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
              T+E L +L   IA+ D +  +   N +  E   +    +      + +       + 
Sbjct: 143 WQSTFEALPDL---IALVDNDHRILRVNNAMAEHLGLQPREIEGRFCYEVV-------HG 192

Query: 365 LPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFEN 418
           L    ++      + S   +++E  ++  H       +V  T          G++ +  +
Sbjct: 193 LSAPPDFCPHSRTLRSRNEENAEVFEERLH----GYFNVTTTPFRDAGGFILGSVHVARD 248

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLS 444
           +T+Q          ++    +  HLS
Sbjct: 249 ITIQKHKHDVMQQAIEESRRSEAHLS 274



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 95/316 (30%), Gaps = 40/316 (12%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFLATNPSNDELLEFLRSA 362
           L    +IL   T+ I          + NR+  E++        +A+            + 
Sbjct: 19  LPDAQDILDKATIGIFKTTLEGRFIYANRALAEIFGYSSPRDLIASVTDI--------AT 70

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTIWMFE-- 417
               + + W+  + ++  ++   + ++      +G       +        G    F+  
Sbjct: 71  QLFADPVQWEEVR-HLLDLHGIVKNYECRQIRRDGTVFWASGSIQAVTDAKGKASHFQGF 129

Query: 418 --NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             +++ +   + ++         T + L + +A+   D RI   N A       +   + 
Sbjct: 130 VSDISDRKLAQDQWQ-------STFEALPDLIALVDNDHRILRVNNAMAEHLGLQPREIE 182

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-----------DS 524
                  +    +          L +    + +   + L G   + +            S
Sbjct: 183 GRFCYEVVHGLSAPPDFCPHSRTLRSRNEENAEVFEERLHGYFNVTTTPFRDAGGFILGS 242

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL---R 581
           V     I +   +  +    + +S R+E  L+   E+ R     K  F     +      
Sbjct: 243 VHVARDITIQKHKHDVMQQAIEESRRSEAHLSSMFESARAILTTK-DFPSAARHIFDSVS 301

Query: 582 SPLTNIIGFTDLLKTS 597
           S + +  G+  LL   
Sbjct: 302 SLIGSSAGYVALLADD 317


>gi|284054265|ref|ZP_06384475.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 823

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 163/386 (42%), Gaps = 30/386 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                +    +      IDH+++G+ V   +G+I  +NPA  +L+   +           
Sbjct: 209 KMATVELQETLANLTSIIDHIADGLLVTDAEGKITRTNPALANLFALGD----------- 257

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                 +  +E+   D+   ++ S      + QG ++L  D + +     +   Q     
Sbjct: 258 -LDIRGKLCSEAFSGDVLNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVL-KQVSSPS 315

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK------- 595
            +          L     A ++ D +K  F+  VS+ELR+PLT+++GF  L++       
Sbjct: 316 GSEELIYIGSVVLFRDITAEKEIDRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDVI 375

Query: 596 -------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
                   +K+    ++ +  V+ I +    L NL+ND+LD+A ++AG  + +   + + 
Sbjct: 376 LPFIKTDDTKINRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSIK 435

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++     +  +  +   I++ V     L   + D  +L+Q+F  ++SNA+ F+  G  V
Sbjct: 436 TVVERAISATTSLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTETG-NV 494

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
            LK          SVK+ G  I     + VF +F    +    + +G GLGL I +  I 
Sbjct: 495 TLKLMAVKSAIKVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEIIQ 554

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            HGG + + S     +T    +P  +
Sbjct: 555 HHGGSIWVESQVGVGSTFYFTLPLPD 580



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 49/138 (35%), Gaps = 15/138 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             + + + L +   I+ ++   + + D    +   N +   L+ +    +     ++   
Sbjct: 211 ATVELQETLANLTSIIDHIADGLLVTDAEGKITRTNPALANLFALGDLDIRGKLCSEAF- 269

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------ 410
               S + L   L  K    + F      E  +    +  G    V   S+P G      
Sbjct: 270 ----SGDVLNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVLKQV---SSPSGSEELIY 322

Query: 411 -GTIWMFENLTVQVDLET 427
            G++ +F ++T + +++ 
Sbjct: 323 IGSVVLFRDITAEKEIDR 340


>gi|239624050|ref|ZP_04667081.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522081|gb|EEQ61947.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 862

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/523 (17%), Positives = 211/523 (40%), Gaps = 47/523 (8%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY-LQFHNRSFVELWEIDLAFLATN 349
           +A+   +E     +L + + +L      + + D + Y L + N+   ++  +    L   
Sbjct: 74  VAVKEEQERLYRQKLQYFHWMLDTYEGNVYVSDMDDYELLYVNQHSCDVLGMPAVKLVGR 133

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
              + +          P   N +  +++ +     +   + T+ + N + +         
Sbjct: 134 KCYEVIQGR---TTPCPFCTNNRLTEDDFYEWEFQNPVLERTFWIKN-RIIDWKGHR--- 186

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPA-FRSLW 467
              + +  ++      E K     + +   I  +  G+A     D +  L     F  L 
Sbjct: 187 -ARLELSHDM---YSTEYKLAKKDQEREALIRSIPGGLARIDGRDMQTVLWYSGGFLELI 242

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII---------TSFDDERKSLQGTL 518
              E +         + + C   Y   D  +  A ++         T+ +    +  GT+
Sbjct: 243 GYTEEQFE-----EELCSQCD--YIHPDDIERIAGVMEQSRITGGATAAEIRIVTHDGTV 295

Query: 519 ELLSDSVLEYS------IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           ++L  +    S       +P   +  +       +  R ++AL +  +  + A++ K +F
Sbjct: 296 KILMVTYSYVSEDKSWDGVPSYYSVGVDVTAERREQARQKQALEDACKTAQIANDAKTNF 355

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+++R+P+  IIG + + + +       K    +  I+ SS  LL+L+N++LD++ 
Sbjct: 356 LSSMSHDIRTPMNAIIGMSVIAQANLKAP--EKIQDCLNKINVSSRHLLSLINEVLDMSK 413

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIF 691
           +++G + L   TI L +L+ +V         E +  ++V +D  +  + + D+ RL Q+ 
Sbjct: 414 IESGKIDLISETISLPELIEDVMDVFRPLAAEKHQELQVNADHVRHENVITDQNRLRQVL 473

Query: 692 SKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             +LSNA+ ++  G  V L        A+  G + F V +NG  + E+    VF  F   
Sbjct: 474 VNLLSNAVKYTPDGGCVGLWIREVPSFAKGRGQYEFIVTDNGIGMSEEFLPHVFEPFARA 533

Query: 746 AHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                 Q +G GLG++I ++ + +  G + + S+    +    
Sbjct: 534 KDPTINQVQGTGLGMAITQNIVRMMNGTIEVRSNPGQGSRFIV 576


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 1240

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 10/249 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+ L +  +A  ++  IK  F  +VS+E+R+PL  +IG  +LLK      LN KQ +YV
Sbjct: 255 REQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNM---GLNPKQREYV 311

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669
           +    S   LL L+ +ILD + +++G  KL+     L ++L++V   +A +     + + 
Sbjct: 312 QAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKELELG 371

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKN 725
            V+ D    S   D  R+ QI   +++NA+ F+ +G   + +       +     F V++
Sbjct: 372 YVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKAEKLVLHFEVRD 431

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +    VF  F        R   G GLGL+I    ++L GG + + S     + 
Sbjct: 432 TGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSGKGSI 491

Query: 784 INCRIPSKE 792
                P +E
Sbjct: 492 FWFTAPLEE 500


>gi|302341474|ref|YP_003806003.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301638087|gb|ADK83409.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 593

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/614 (16%), Positives = 213/614 (34%), Gaps = 49/614 (7%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
           +  ++V     +         D+ G +   N ++      E    Q+A G          
Sbjct: 6   AEQLAVLAQAMEHSPTAWAVTDEEGRVRRHNAAFAALLGLES--GQEAAGRPWSHLSPVA 63

Query: 249 KKRMISSSALEKNFCETV----STLEHGNNKSYKIVRVLNSFGEAGI----AIDVSKEIT 300
           ++   S+   +             L   +     +V   +     G     +  V++   
Sbjct: 64  RRAEESALLRQAGQDGRAVSTHKALVQRDGGLITVVDAAHPCQNGGFWHLLSPAVNRPGL 123

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           VN +     E        I + DQ+  ++F N++ +     D      + +   L     
Sbjct: 124 VNGRCQAMLEAFD---DPIYVCDQDHNIEFLNQAMIRRLGRDATGEKCHQAIHGL----- 175

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRGGTI--WMF 416
                    +   W E    V       ++     + +  +V+ T    P G      +F
Sbjct: 176 --------DDVCPWCEG-QKVQNGQTVRQEMQRSSDSRWYNVVCTPVFLPDGRVARQTVF 226

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T Q  LE      +  Q    + L  GV        +   NPA + +          
Sbjct: 227 RDVTSQKLLEQHLRHALDSQRVLFESLPVGVLAVDEHYNVTQINPAAQKILGV------- 279

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                N      RY ++  G D            R + +G      D  +  S   L + 
Sbjct: 280 -----NANQALGRYCHDVMGCDNDPLCPLR----RSAAEGRTAGPDDWHVRDSRGALVDV 330

Query: 537 QTMLTFVNVTD-SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +     +  +D          +     +  +  +   +  +++++++PL +I GF +LL 
Sbjct: 331 RMWAAAIFDSDGRHLGGVEAFQDISEAKALERHRARIIAMLAHDMKTPLISIRGFANLLL 390

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +  +    + +Y ++I   +  L   V+  L+++ +  G +KL    + L + L  V 
Sbjct: 391 RDEDQAHAKNRRKYAQFIEQEAARLDGFVHRFLEMSRLQDGALKLKPERLDLAERLAGVV 450

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +++  +    N+ + + +        AD + L +IF  +L NA+  S  G  V +    +
Sbjct: 451 EAVRPQFRAANVELLLEAPAPAP-VEADAELLGRIFDNLLDNALQHSPTGGQVHVSVIAE 509

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            G+    V++ GS IP D    +F  F   ++    +G GLGL+  ++   LHGG + + 
Sbjct: 510 GGEAQVRVRDQGSGIPADELSLIFEPFFRGSNSKTTQGYGLGLAAAKAIACLHGGRLVVD 569

Query: 776 SSDEGVTTINCRIP 789
           S          R+P
Sbjct: 570 SQPGHGALFTLRLP 583



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/393 (9%), Positives = 119/393 (30%), Gaps = 54/393 (13%)

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF-----------ENWLKFHHY 124
           +     L ++    + +P       +   + + +    +              W      
Sbjct: 3   MATAEQLAVLAQAMEHSPTAWAVTDEEGRVRRHNAAFAALLGLESGQEAAGRPWSHLSPV 62

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
            + ++ +  LR+ GQ  D  A + +   ++ +G   G    +               +  
Sbjct: 63  ARRAEESALLRQAGQ--DGRAVSTHKALVQRDG---GLITVVDAAHPCQNGGFWHLLSPA 117

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVFQKAIGESRK 242
             +        + + ++ D  ++  DQ  +I + N +  +    +  G    +AI     
Sbjct: 118 VNRPGLVNGRCQAMLEAFDDPIYVCDQDHNIEFLNQAMIRRLGRDATGEKCHQAIHGLDD 177

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-----DVSK 297
           +      +++ +   + +    +       +++ Y +V       +  +A      DV+ 
Sbjct: 178 VCPWCEGQKVQNGQTVRQEMQRS------SDSRWYNVVCTPVFLPDGRVARQTVFRDVTS 231

Query: 298 EITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           +  +   L H  +    +  +L V +   D++  +   N +  ++  ++         +D
Sbjct: 232 QKLLEQHLRHALDSQRVLFESLPVGVLAVDEHYNVTQINPAAQKILGVNANQALGRYCHD 291

Query: 354 EL---------LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            +         L    +  +     +W     +                  +G+ L    
Sbjct: 292 VMGCDNDPLCPLRRSAAEGRTAGPDDWHV--RDSRGALVDVRMWAAAIFDSDGRHL---- 345

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
                 G +  F++++    LE     ++ +  
Sbjct: 346 ------GGVEAFQDISEAKALERHRARIIAMLA 372



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 14/190 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +   +QL    + + +   A A+ D+   ++ HN +F  L  ++    A       L   
Sbjct: 3   MATAEQLAVLAQAMEHSPTAWAVTDEEGRVRRHNAAFAALLGLESGQEAAGRPWSHLSPV 62

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIWMFE 417
            R A +                  ++  THK      +G  + V+  ++P + G  W   
Sbjct: 63  ARRAEE-------SALLRQAGQDGRAVSTHKALVQR-DGGLITVVDAAHPCQNGGFWHL- 113

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
            L+  V+   +   +       ++   + + V   D  I+  N A       +       
Sbjct: 114 -LSPAVN---RPGLVNGRCQAMLEAFDDPIYVCDQDHNIEFLNQAMIRRLGRDATGEKCH 169

Query: 478 THIRNIAATC 487
             I  +   C
Sbjct: 170 QAIHGLDDVC 179


>gi|186682598|ref|YP_001865794.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186465050|gb|ACC80851.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 657

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/405 (24%), Positives = 170/405 (41%), Gaps = 36/405 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +    +L      E    +  +    T D + +GV +    G I   N A   ++    
Sbjct: 116 LLATVRSLLRIRRAEEAALSSAREWQSTFDSIKDGVCLVDTKGIILRCNLAITQIFCKPS 175

Query: 472 NRLSPGTHIRNIAA-------TCSRYYNESDGWDL---------FAAIITSFDDERKSLQ 515
           + +    H   +AA       TC R   E+    +         FA  I    DE  +L 
Sbjct: 176 HEILGCAHHNLMAAELGIGDGTCFRRAKETHQRQVLEFQSTERWFAKTIDPVLDEHGTLT 235

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G + +LSD         L   Q            +   +L ++ E  ++A+ IK+ F+  
Sbjct: 236 GAVFILSDITERKRASALLQEQ-------NDRLNQLMISLQQQTEQAQQANRIKDEFLAV 288

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELRSPL  I+G+  +L+TS+  +  +K    +E I  ++ +   L+ D+LD++ +  
Sbjct: 289 LSHELRSPLNPILGWAKILQTSRQDA--AKTQYALETIERNAKLQAQLIEDLLDVSRILQ 346

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G + LN   + L   +    +++       +I+I+ I +   G  + D  RL Q+   +L
Sbjct: 347 GKLSLNTVPVGLTFTIKAALETVRLAAEAKSIQIQTIFEPNAGQVLGDSGRLQQVVWNLL 406

Query: 696 SNAMDFSSKGSTVILKAARDNGDF--------IFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           SNA+ F+ +G  V ++  R   +           SV + G  I  D    VF+ F     
Sbjct: 407 SNAIKFTPQGGQVEVRLERIENELDTHPSEYTQISVSDTGMGISADFLPYVFDYFRQADG 466

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
              RR  G+GLGL+IV   + LHGG +  +S  +    T   + P
Sbjct: 467 TTTRRFGGLGLGLAIVRHLVELHGGSIQAASPGEGQGATFTVKFP 511


>gi|256840060|ref|ZP_05545569.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738990|gb|EEU52315.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 632

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 129/641 (20%), Positives = 259/641 (40%), Gaps = 65/641 (10%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK---------- 235
           + +   +   K+L D  +  +W  D      +   SY  +     I  +K          
Sbjct: 2   EDIQTQLDQCKLLLDRAEVGLWEAD------FVQRSYICSDYLMSIFGKKGNNLSFFEFY 55

Query: 236 -AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
             I E  +         + S    E+ F     T E       ++     + G    A+ 
Sbjct: 56  YIIREDFRDLITTDFLSIQSVDTYEQIFPIITPTGEKWVRS--RLCERKLNNGVCVKALG 113

Query: 295 VS--------KEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           +         KE  ++  + H   I      NL V + ++D++ YL       ++L   D
Sbjct: 114 ILQILPNFKLKEEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYL-------IDLNAKD 166

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWH--LPNGQ 398
           +         D L   + S   +P+ +  K  KEN    ++ + + K  D ++     G+
Sbjct: 167 MEIFGIRSKKDVLGVNIFSNPIMPKDV-IKKLKENKSVNFRLNYSFKKVDDYYNTSKVGE 225

Query: 399 TLHVIVTS--NPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              V   S    + G     + +  + T ++    + +    V      +   G A++  
Sbjct: 226 MDIVTKASILYDQRGEPSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDL 285

Query: 453 ---DGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              +G  IK     + ++ + +   LS    I +        Y  S   ++       F 
Sbjct: 286 YTFEGYAIKQW---YENMGEKDGTPLSQIIGIYSYIHPNDAGYINSFFEEVKQGKAHHFR 342

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            E +   G       + +  +   +   +  +  +N   +   +  L    E   + D +
Sbjct: 343 REVRVKSGDGWKWICANITRNPQSVDPNKPEMICINYDITELKDSQLK--RERAEELDRL 400

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+ LL  +       ++ ++VE I +++ +LL L++DIL
Sbjct: 401 KSAFLANMSHEIRTPLNAIVGFSQLLAET---DDPEERHEFVEIIDSNNRMLLQLISDIL 457

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DLA +++G M   ++ + + +++NE+  S   KM + N+ +    D       +DR RL 
Sbjct: 458 DLAKIESGTMDFKFADMSVKEVINEIVTSFRIKMPD-NVALIAPKDSPECQIYSDRMRLT 516

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ S  L+NA+ ++S+G  + L       +  FSV + G  + +++   +F+RF      
Sbjct: 517 QVISNFLNNAIKYTSEG-CITLAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTF 575

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++G GLGLSI E+ +N  GG + ++S     +T     P
Sbjct: 576 --KQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1407

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 115/696 (16%), Positives = 224/696 (32%), Gaps = 88/696 (12%)

Query: 162  SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWANI 220
              A L           L         L    +  +   D  +  +++    +G ++ AN 
Sbjct: 328  GVALLW------RQQRLVSAQQAAAVLRESENRLRKALDVQNVGVMFWDVTSGTLIDAND 381

Query: 221  SYKKNTE------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
            ++ K             +  +       +     +     ++     + E     + G+ 
Sbjct: 382  TFLKIMGYSRQEVDAHQLTWQTFTPPEYIETSIAEMESFRANGRVGPY-EKEYLRKDGSR 440

Query: 275  KSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA--IAIFDQNRY--LQ 329
            + +      L+        IDVS +      L  + E L     A  + ++D N      
Sbjct: 441  QWFVFAGSALDENRCVEYCIDVSGQKRAESALAESEERLRLALQATNLGLYDLNVQSGEA 500

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
              N  +  +            +N   +E +   ++      +  +     + Y+     K
Sbjct: 501  LVNAEYAAMLGYAPETFVE--TNAAWIERIHPDDREITARAYADYVAGRTAQYRVEFRQK 558

Query: 390  D-----TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE------------------ 426
                   W L  G+ +       P    +    ++T +   E                  
Sbjct: 559  TRDGDWKWILSLGKIVAFDDAGKPL-RMLGTHTDITERKRAEASVAQHARELERGRQALL 617

Query: 427  ------TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                   +  T ++     ++   E + +      I+  N AF +       ++     I
Sbjct: 618  SVLQDQRRAETSLRQLALAVEQSPESIVITNLSAEIEYVNAAFLATTGYTREQV-----I 672

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----- 535
                            +D   A +T+    +  L        D V    I PL       
Sbjct: 673  GRNPRILQSGRTPRATYDAIWAALTAEQTWKGELVNRKASGEDYVEFAHIAPLRQPDGRI 732

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEAL------------------RKADEIKNSFVQHVS 577
            +  +    ++T+  R    L      L                    A + K++F+ ++S
Sbjct: 733  SHYVAVKEDITEKKRLGEELDRHRHHLEDLVTQRTAELAQARQQAEAASQAKSAFLANMS 792

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +E+R+P+  IIG T LL+      +  +Q   +E I AS   LL L+NDILDL+ ++AG 
Sbjct: 793  HEIRTPMNAIIGLTHLLRK---DGVTPQQDGRLEQIEASGRHLLGLINDILDLSKIEAGK 849

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            + L      L+ +L+ V   I        + I++  D        D  RL Q    +  N
Sbjct: 850  LDLALEDFHLSAVLDHVASLIRPSAQSKGLHIELDGDAVPTWLRGDPMRLRQCLFNLAGN 909

Query: 698  AMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQR 751
            A+ F+ +GS V    +LK   +     F V++ G  +     + +F+ F         + 
Sbjct: 910  AVKFTERGSIVLRAKLLKDGAEGLQVRFEVEDTGIGVTPAQGQRLFHVFQQAEVGTTRKY 969

Query: 752  RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             G GLGL++  +   + GG   + S     +T    
Sbjct: 970  GGTGLGLALTRNLAQMMGGEAGMDSIPGEGSTFWFT 1005


>gi|312868823|ref|ZP_07729012.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3]
 gi|311095666|gb|EFQ53921.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3]
          Length = 617

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 164/417 (39%), Gaps = 32/417 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   ++  +     + 
Sbjct: 209 EEMRKQTLRIARGDFSGQVRVMGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLDSVLS 268

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G I + N     L   +      G  I +       Y           
Sbjct: 269 HMSDGVLATDRRGNITIVNNMALQLLGVDHEDDLIGKSIIDALDIRHDY--------TVR 320

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +I S  ++++ +       +D +L     P+      ++ +         +        
Sbjct: 321 ELINS--NQKEMIIDMSAGGNDLILNAYFSPIQRESGFISGLVCVLHDVTSQQ------- 371

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L        +    Q++  I   +  ++
Sbjct: 372 --KEERERKQFVSNVSHELRTPLTSVHSYVEALSDGAWKDKDI-APQFLTVIQNETNRMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-------NNIRIKVISD 674
            ++ND+L L+ +D+G  KLN   + + +L N +       + +           I+    
Sbjct: 429 RMINDLLSLSRMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKDENDQNSKKYTIERYFT 488

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP   
Sbjct: 489 DKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKD 548

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF  V  A   ++ G GLGL+I +  INL GG + + S +   +T    +P
Sbjct: 549 LGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINLLGGQIWVDSIEGQGSTFYISLP 605


>gi|294506364|ref|YP_003570422.1| Sensory histidine protein kinase [Salinibacter ruber M8]
 gi|294342692|emb|CBH23470.1| Sensory histidine protein kinase [Salinibacter ruber M8]
          Length = 1987

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 138/817 (16%), Positives = 297/817 (36%), Gaps = 80/817 (9%)

Query: 31   AGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD 90
             G LL ++I  +    QR    + + +  +FL ++ D +     LL E   L   W+ + 
Sbjct: 1182 GGTLLFSVIHDVT---QREEHRQDLADQKAFLDQVLDTIDDVFYLLDEQGDLLF-WNRRV 1237

Query: 91   ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL--VAETQ 148
               E+ G     ++               +     ++  A E+    GQ+  +     T+
Sbjct: 1238 N--EVTGYTDAELEAMTALDLF-------EGDDAARIRDAIEE-SAAGQAVRVEAPLVTK 1287

Query: 149  NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
            +   +  E       A  R   L GI  ++ +   + + L      F    +++    + 
Sbjct: 1288 DGRRVAHEFVGDAFDAPTRGRVLCGIGRDVTQQKERRRALRRANHRFDQFAETVPNAFYI 1347

Query: 209  RDQA-GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
                  ++L+AN + +     +    +       +         + S+   +        
Sbjct: 1348 VTPDYSELLYANSAAETLYGVDRDTLRDDPSAWTRHVHPADLASLRSNVEAQGAGEARWP 1407

Query: 268  TLEH-------GNNKSY--KIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHN 314
              +           +    +I  + +  G     AG+  DV+       +L   Y +  +
Sbjct: 1408 QHQEFRVLHPTRGRRWLKAQIDGMYDDEGTLQRLAGVTTDVTDRKVREQRLRTLYRVTQD 1467

Query: 315  L-------TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
            L         A  + D          + V L + D+   A    ++ +    R       
Sbjct: 1468 LFDVSTKAGAASIVTDALGDTLGLQEAAVYLRDGDVLVRAGTIDSEVVGSMPRVEQ--GH 1525

Query: 368  QLNWKTWKENIFSVYKSSETHKDTW---------HLPNGQTLHVIVTSNPRGGT----IW 414
               W    E     Y    T  D           ++P GQ   ++V +  +       + 
Sbjct: 1526 TPLWAALDEGDTHAYSDPSTIDDGVDRSGLAGCAYVPVGQRGVLVVGAAAQNRLADEELR 1585

Query: 415  MFENLTVQVD-------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
              E +   +         E       +      +++  G AVF  DG +  +  A   L 
Sbjct: 1586 FLETIAQSLRKALTSLTQEHDLIARERRYRTLAENIPNG-AVFLFDGNLAYT-LAAGELL 1643

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             T E      + +    A       E     +      + + ER   +  +       L 
Sbjct: 1644 GTYE---LGESDLLGAQAGTVLVGIEGGRHPIVDRFEAALEGERTDRRIGV---GGRTLR 1697

Query: 528  YSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              ++PL    NA+ ++   ++T+ VR ER L    +A  +A+ +K+S + ++S+E+R+PL
Sbjct: 1698 VHVVPLQGDTNAKGLMLAQDITEDVRKERELMSAKKAAEEANRMKSSLLANMSHEIRTPL 1757

Query: 585  TNIIGFTDLLKTSKLGSLNSKQS-------QYVEYISASSTILLNLVNDILDLATVDAGI 637
            T+I+GF ++++          ++       ++   I  S   L++ +  +L+L+ ++AG 
Sbjct: 1758 TSILGFAEMIEEETGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDTLTGVLNLSRLEAGE 1817

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            M L    + L++   EV   +  +     +R++V + G+     AD   +  +   ++SN
Sbjct: 1818 MDLAAEPVDLSEQAREVADELRPRAEAEGLRLQVQAGGEPIWAQADGGGMQIVLRNLVSN 1877

Query: 698  AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVG 755
            A+ ++  G  + L+  R+NG  +  V+++G  +  +  + +F  F   +     +  G G
Sbjct: 1878 AIKYTDDGE-IRLRVYRENGSAMIEVEDSGIGMDPEKIEDLFKPFRQASEGMAREYEGTG 1936

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            LGL++    +    G + + +     TTI  ++P +E
Sbjct: 1937 LGLAVTREAVEQMNGSIEVETEKGKGTTIRVQLPKEE 1973



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/548 (13%), Positives = 166/548 (30%), Gaps = 69/548 (12%)

Query: 60   SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWL 119
            + ++E  ++  K    L   +   + W+ +    +    L              +F   +
Sbjct: 821  TDVTERKERQRKLDLALAGTDTGILEWNLQTGEMQWDETLQDLFG--HDPQTFEAFTEIV 878

Query: 120  KFHHYIKLSKATEKLRKEGQSFDLVA------ETQNDCAIKIEGRVSGSCAFLRILSLDG 173
              +    +  A E +   G+S++         E     +++         A +R+L   G
Sbjct: 879  HPNDLPDVEAALENMTSTGESWEGDFWLFHPEEGVARMSLRATPVHEKGEA-VRVL---G 934

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIV 232
            I +++     + + L+     ++ L  +    V   D   G I+ AN +    T   G  
Sbjct: 935  IATDVTAQWERQRDLAASRERYQTLLQANPDPVLVADAETGKIVEANAA---ATGLLGRP 991

Query: 233  FQKAIGE---------SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI---- 279
             ++ IG            + +    ++ +     +      T   +      +  +    
Sbjct: 992  REEIIGAHQTDLHPSGRAEAYASLFRRSLDEDGPMRALPDGTQIEVVTDEGTTVPVEVNA 1051

Query: 280  --VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQN-RYLQFHN 332
              V + +     G+  DVS+   +  +LT        +       + + D+    ++  N
Sbjct: 1052 TTVDLPDGRVVYGVFRDVSERKAMQKRLTRRERRFRMMFEGHSAPMLLIDEETGAIEQAN 1111

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
             + VE +  D   L +    D              QL+ +          +  +      
Sbjct: 1112 AAAVEFYGYDRDMLTSMSIQDI------------NQLSAEEVARERREAAEDGDEFLFEH 1159

Query: 393  HLPNG--QTLHVIVTSNP---RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             L +G  +T+ V+    P   RGGT+   +  ++T + +             + +D + +
Sbjct: 1160 ELASGEVRTVRVLSAPVPNLDRGGTLLFSVIHDVTQREEHRQDLADQKAFLDQVLDTIDD 1219

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
               +    G +   N     +    +  L         A T    +   D   +  AI  
Sbjct: 1220 VFYLLDEQGDLLFWNRRVNEVTGYTDAELE--------AMTALDLFEGDDAARIRDAIEE 1271

Query: 506  SFDDERKSLQGTLELLSDSVLEYSII------PLPNAQTMLTFVNVTDSVRAERALTEKN 559
            S   +   ++  L       + +  +      P           +VT      RAL   N
Sbjct: 1272 SAAGQAVRVEAPLVTKDGRRVAHEFVGDAFDAPTRGRVLCGIGRDVTQQKERRRALRRAN 1331

Query: 560  EALRKADE 567
                +  E
Sbjct: 1332 HRFDQFAE 1339



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 110/346 (31%), Gaps = 39/346 (11%)

Query: 123  HYIKLSKATEKLRKEGQSFDLVAETQND--CAIKIEGRVS-----GSCAFLRILSLDGIY 175
               ++++   +  ++G  F    E  +     +++          G      ++      
Sbjct: 1137 SAEEVARERREAAEDGDEFLFEHELASGEVRTVRVLSAPVPNLDRGGTLLFSVIHDVTQR 1196

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
             E        + L++  +    + D++D + +  D+ GD+L+ N    + T       + 
Sbjct: 1197 EEH------RQDLADQKAFLDQVLDTIDDVFYLLDEQGDLLFWNRRVNEVTGYTDAELEA 1250

Query: 236  AIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV-----RVLNSF 286
                   LF+ +   R+  +    +A +    E     + G   +++ V           
Sbjct: 1251 MTA--LDLFEGDDAARIRDAIEESAAGQAVRVEAPLVTKDGRRVAHEFVGDAFDAPTRGR 1308

Query: 287  GEAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQN-RYLQFHNRSFVELWEI 341
               GI  DV+++      L             +  A  I   +   L + N +   L+ +
Sbjct: 1309 VLCGIGRDVTQQKERRRALRRANHRFDQFAETVPNAFYIVTPDYSELLYANSAAETLYGV 1368

Query: 342  DLAFLATNPS------NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            D   L  +PS      +   L  LRS  +       +  +   F V   +   +      
Sbjct: 1369 DRDTLRDDPSAWTRHVHPADLASLRSNVEAQGAGEARWPQHQEFRVLHPTRGRRWLKAQI 1428

Query: 396  NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
            +G       T     G      ++T +   E +  TL +V  +  D
Sbjct: 1429 DG-MYDDEGTLQRLAGVT---TDVTDRKVREQRLRTLYRVTQDLFD 1470



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 78/541 (14%), Positives = 167/541 (30%), Gaps = 63/541 (11%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET---PEIIGQLHQ 101
           I +R      V E  + L+E   + ++    L   +     W   D+     E    L  
Sbjct: 326 IHRRKQAEASVQEKSAALAE---EKTRLRVALDAADAGVFEWSIPDDRRVWDERTQALFG 382

Query: 102 RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG 161
               PQT   LL     +      +L     ++             +       E R   
Sbjct: 383 VDAAPQTTGALLGH---VHPGDRGRLQDTMARVLGTPDKETCQVRYRIRRP-DGEDRHVQ 438

Query: 162 SCA-FLRILS-----LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           + A  LR        L G Y ++ E   + +KL      F+ +F   + L    D  G +
Sbjct: 439 ARARILRDEDGDAERLIGTYQDVTERRRRRQKLRRSERQFEAVFQDPNLLTGLLDLDGTL 498

Query: 216 LWANISY-----KKNTETEGIVFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTL 269
              N +         T+  G  F +          + +++  +  ++A E    ++    
Sbjct: 499 RRVNDAALSFIGADRTDVVGRPFWETPWWDHDSALQADLQGWIERAAAGEYVTYQSQHVT 558

Query: 270 EHGNNKSYK--IVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHNLTVAIAIFD 323
            +G   + +  I  V    G     I    DV+       +L   ++ + +    +A+  
Sbjct: 559 GNGLTFTVRGSIRPVTGEDGTVTALIVSGRDVTAREDQRRELEVLHQAVEDSAEGMAVLA 618

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
            + Y  + +++   ++  D                L   +++      +  ++ +F V +
Sbjct: 619 GDEY-VYVDQTHAHMYGFD----DKEQLLGNTWRMLYGEDEI------ERLEKTVFPVLE 667

Query: 384 SSETHK--DTWHLPNGQTLH--VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                +   T   P+G T    + +T    G  +    ++T + +   K   L+      
Sbjct: 668 EEGHWQGLVTGQRPDGSTFPAALSLTVTEAGRLVCTVRDMTDRRNRNRKRQLLLTASET- 726

Query: 440 IDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
                 G+A +    G+I+              N         +         + S   D
Sbjct: 727 ------GIAEWDLQAGQIR--------WDGMLRNIFGRAPESTDDFFALIHPEDRSRVRD 772

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSVRAERA 554
            F +++ S        +          +E  +IP+       + + +  +VT+    +R 
Sbjct: 773 GFDSVVDSASSWNGEFRIEDGDGRTRWIETLVIPIFEDGEVGRLLASGTDVTERKERQRK 832

Query: 555 L 555
           L
Sbjct: 833 L 833


>gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 934

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/434 (22%), Positives = 187/434 (43%), Gaps = 49/434 (11%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV-DLETKY 429
           + +WK+      ++  +      +P+ Q +          GT    +++  ++  L+ + 
Sbjct: 294 YYSWKKPDTGEERAKVSFSMG--IPDWQWMI---------GTGVYIDDIEKEISQLQIEL 342

Query: 430 NTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           N  +K +   T+   S  + +F     I   N  +R L       +S      N+    +
Sbjct: 343 NQNLKREIRNTLFITSAILIIF-----ILFLNLFYRYLRNDFSLFISFFNQAANLDQEIN 397

Query: 489 R---YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
           R   +++E      +A  +    D+RK+            L+     L +     T+   
Sbjct: 398 RKALWFHELAEMANYANQM--LRDKRKA---------QRKLQQHRDHLESEVAKRTYWLK 446

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             + + E+A     E    A++ K+ F+ ++S+ELR+PL  I+GF  ++  S+  +L+ +
Sbjct: 447 EKTTQLEQA----KEIAEAANQAKSLFLANMSHELRTPLNAILGFAQIMHRSQ--TLSQE 500

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  I+ S   LL+L+ND+LD++ ++AG + L+ + I L  LL+EV      +    
Sbjct: 501 HQENVNVINRSGEYLLSLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYLRAESK 560

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARD--- 715
            +++ +  D  +      D ++L Q+   +LSNA+ F+ +G        +    +++   
Sbjct: 561 QLQLDIERDNNVPRYLYTDGKKLRQVLINLLSNALKFTQEGGIHLYINDITPPLSKETMT 620

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSI 774
                F V++ G  I E+    +F  F   A     + G GLGL I   F+ L GG +S+
Sbjct: 621 EVILEFQVRDTGPGIAENEMDKLFEAFTQTATGIASQEGTGLGLPISRKFVQLMGGDISV 680

Query: 775 SSSDEGVTTINCRI 788
            S     TT    I
Sbjct: 681 QSKVGEGTTFTFSI 694


>gi|146291410|ref|YP_001181834.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|145563100|gb|ABP74035.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
          Length = 1196

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 170/386 (44%), Gaps = 27/386 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++D + +    +    E +D +   + V   D ++ L N +++ ++K           I
Sbjct: 558 RRLDAKQEIQNQLLFMQEVVDSIPHPIYVRDIDQQLILCNQSYQHIFKATNKEDILHKSI 617

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSV-LEYSIIPLPNAQT 538
              +      +   +  +L      +  + R  S    + +   +V + +   P  N   
Sbjct: 618 EEGS------HRVIEAHELEKEYRKAIQENRAISRDREIHIDGKAVNIYHWFQPYKNEHG 671

Query: 539 MLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +      +++V+D V+    L E  E    A + K  F+  +S+E+R+P+  IIG  +L
Sbjct: 672 KICGIVGGWIDVSDRVKLMAQLREAKELADSASKAKTQFLATMSHEIRTPMNAIIGLLEL 731

Query: 594 LKTSKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
                +   +  Q  +  +     S+  LL L+ DILD+  ++AG + LN + I L   +
Sbjct: 732 ----AIKRSHENQFDFNSIRVAHDSAKGLLALIGDILDIVKIEAGELTLNPTKIDLKQTI 787

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +   Q       E  + +K+I D KL  +V  D  RL QI S ++SNA+ F+++G  V +
Sbjct: 788 SSTIQIFEGIALEKKLPLKLIFDHKLPQYVLLDPLRLKQILSNLISNAIKFTNQG-MVTV 846

Query: 711 KAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESF 764
            A +     +    +  V + G  I +D  + +F  F    H    + G GLGL+I  S 
Sbjct: 847 SAEQQLELNEQMYLLLKVSDTGIGISKDDQQKLFRPFAQVQHGADNKGGTGLGLAICSSL 906

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
            ++ GG + + S  E  TT++ R+P 
Sbjct: 907 CDMMGGELRMISEPEQGTTLSMRLPL 932



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 15/168 (8%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           +  +  +  I    A+     +++ N +   + + DS+   ++ RD    ++  N SY+ 
Sbjct: 548 WTWLTRIHYIRRLDAK-----QEIQNQLLFMQEVVDSIPHPIYVRDIDQQLILCNQSYQH 602

Query: 225 NTETEGIV--FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
             +         K+I E      E  +       A+++N   +     H + K+  I   
Sbjct: 603 IFKATNKEDILHKSIEEGSHRVIEAHELEKEYRKAIQENRAISRDREIHIDGKAVNIYHW 662

Query: 283 LNSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              +        G  G  IDVS  + +  QL    E+  + + A   F
Sbjct: 663 FQPYKNEHGKICGIVGGWIDVSDRVKLMAQLREAKELADSASKAKTQF 710


>gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 827

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 150/378 (39%), Gaps = 18/378 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + +LE      ++       + S+ + + GPD RI   N AF  +     +        
Sbjct: 303 RETELERN-QAELEQLSTVAQNASDSIVLSGPDQRIFWVNEAFSRMTGYTVDEAVGKRP- 360

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  +    +       +  I+  +   + +    +      ++ +++P+ +    +
Sbjct: 361 ---GELLNGPETDPATIREISEYISRGERLHREILNYTKSGKTIWVDTNLVPVLDEDGEI 417

Query: 541 TFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             V   +       +    L     A  +AD  K  F+ ++S+E+R+P+  IIG  DLL 
Sbjct: 418 NMVIGIERDVTSQKQNAAELAVAKVAAEQADRTKTEFLANMSHEIRTPMNGIIGMADLLS 477

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++   L+  Q QYV+ I  SS  LL ++NDILDL  +++G + L      L   +    
Sbjct: 478 ETE---LHEDQEQYVQIIRTSSKALLKIINDILDLTRMESGKLSLEPVDFDLESCIENAV 534

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKA 712
             +     E  + + V     L  +  AD  RL QI   ++ NA+ F++ G     +L A
Sbjct: 535 DILRPVASEKGLDLTVNYASGLPRTVRADDGRLRQILVNLVGNAVKFTASGRVDVRVLCA 594

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
           + +       V++ G  +      ++F+RF        R   G GLGL+I         G
Sbjct: 595 STNPYRLTIDVQDTGIGMTSAQLHNIFDRFSQADAATTRSFGGTGLGLTISRLLAKQMDG 654

Query: 771 HVSISSSDEGVTTINCRI 788
            +++ S     +  +  I
Sbjct: 655 DITVYSDPGRGSCFSLHI 672



 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 10/145 (6%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           +R  +++ +     E      +L    +V +   DS+            I W N ++ + 
Sbjct: 292 VRRATINTLRKRETELERNQAELEQLSTVAQNASDSIV----LSGPDQRIFWVNEAFSRM 347

Query: 226 TE-TEGIVFQKAIGE---SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK--I 279
           T  T      K  GE     +     I++     S  E+   E ++  + G        +
Sbjct: 348 TGYTVDEAVGKRPGELLNGPETDPATIREISEYISRGERLHREILNYTKSGKTIWVDTNL 407

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQ 304
           V VL+  GE  + I + +++T   Q
Sbjct: 408 VPVLDEDGEINMVIGIERDVTSQKQ 432



 Score = 40.7 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 57/167 (34%), Gaps = 24/167 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++      +L     +  N + +I +   ++ + + N +F  +    +         + +
Sbjct: 305 TELERNQAELEQLSTVAQNASDSIVLSGPDQRIFWVNEAFSRMTGYTVD--------EAV 356

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTSNP----RG 410
            +        PE  +  T +E    + +    H++   +  +G+T+ V     P     G
Sbjct: 357 GKRPGELLNGPET-DPATIREISEYISRGERLHREILNYTKSGKTIWVDTNLVPVLDEDG 415

Query: 411 G---TIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
                I +  ++T Q     +            + + E + ++S  +
Sbjct: 416 EINMVIGIERDVTSQKQNAAELAVAKVAAEQADRTKTEFLANMSHEI 462


>gi|212637309|ref|YP_002313834.1| RscS [Shewanella piezotolerans WP3]
 gi|212558793|gb|ACJ31247.1| RscS [Shewanella piezotolerans WP3]
          Length = 934

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 158/389 (40%), Gaps = 26/389 (6%)

Query: 419 LTVQVDLETKYNTLV-------KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           +  Q   E +    +       ++     +H  +G  +    G +   N  F ++     
Sbjct: 253 VQEQSRKERRILESLVASEQEKEMLALVAEHAQDGFIITDKQGFVTWLNKGFTTISGYTL 312

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L          +       E    D  +  I +       +    +  +   ++ +I 
Sbjct: 313 ADLEGKKP----GSILQGQETEKGDVDKISRAIKAGKSIASEVVNYHKDGTPYWVDMTIS 368

Query: 532 PLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            + ++       +    + T   + +  L +       +++ K++F+  +S+ELR+PL  
Sbjct: 369 AVTDSDGDISNFIAVERDTTARKQMQDDLAKAVIKADISNKAKSTFLATMSHELRTPLNG 428

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G   +++       N +  + ++ +  S   L +L+NDILD + V+ G ++L      
Sbjct: 429 ILGMAQIIE---PNLDNPEHRKQIQILLESGNHLTSLLNDILDFSKVEQGKLELESELFR 485

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            N +L  + ++      E NI++ V ++  +   F  D+ R+ Q+   +LSNA+ F+ +G
Sbjct: 486 FNSVLEPISKTYEPICDEKNIQLIVQNEIDEKQCFKGDKSRIRQVIYNLLSNAVKFTEQG 545

Query: 706 STVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           S  +L      A        ++ + G  I  +   S+F+ FV       R   G GLGLS
Sbjct: 546 SVSLLFKQGVNAEGQQGIEATIIDTGIGIRPERLASIFDPFVQAESSTTRQYGGTGLGLS 605

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           IV+  + L GG +SI+S  +  T     +
Sbjct: 606 IVKQLVELMGGTISITSQVDKGTRFAIFL 634


>gi|77745279|gb|ABB02540.1| signal transduction histidine kinase [Lactobacillus reuteri]
          Length = 621

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 161/416 (38%), Gaps = 31/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   ++  +     + 
Sbjct: 210 EEMRKQTLRIARGDYSGQVKVLGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLDSILS 269

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N     L   E      G  I ++      Y           
Sbjct: 270 HMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDVLDIRHDYTVRQLVNGEQR 329

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +I    +   +L          +L     P+      ++ +         +        
Sbjct: 330 EMIIDMSNSGNNL----------ILNAYFSPIQRESGFVSGLVCVLHDVTSQQ------- 372

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L             ++++ +   +  ++
Sbjct: 373 --KEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAWQD-KEIAPKFLKVVQDETDRMI 429

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI------RIKVISDG 675
            ++ND+L L+ +DAG  KLN   + +N+L N +       + +          I+     
Sbjct: 430 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 489

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP    
Sbjct: 490 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDL 549

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A   ++ G GLGL+I +  IN+ GG + + S +   +T    +P
Sbjct: 550 GRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + + + +      IL +++  +   D+   +   N   ++L  ++        S  ++
Sbjct: 252 EAQESSDSERRRLDSILSHMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDV 311

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----G 410
           L+ +R    + + +N            +  E   D  +  N   L+   +   R      
Sbjct: 312 LD-IRHDYTVRQLVN-----------GEQREMIIDMSNSGNNLILNAYFSPIQRESGFVS 359

Query: 411 GTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
           G + +  ++T Q   E            +  T +      ++ LS+G
Sbjct: 360 GLVCVLHDVTSQQKEERERKQFVSNVSHELRTPLTSVRSYVEALSDG 406


>gi|269958992|ref|YP_003328781.1| sensor histidine kinase [Anaplasma centrale str. Israel]
 gi|269848823|gb|ACZ49467.1| sensor histidine kinase [Anaplasma centrale str. Israel]
          Length = 469

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
           A   L E+ E   +    K+ F+ +VS+ELR+PL +IIGF++++++  LG + + +  +Y
Sbjct: 216 ANLELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEY 275

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S   LL+L+NDILD +  +A  + + +    L+ +++     +  +  +  + +
Sbjct: 276 ISDIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLSKIVDSSFTMVLPRAKDAKVEL 335

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K     +    +AD +R+ Q+   ILSN++ F+ +G  V L         +  + + G  
Sbjct: 336 KKEMPEEPVVMLADPKRMKQVIINILSNSVKFTPEGGLVKLCTEIRGEQLVVEISDTGIG 395

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I +     V + F      H  +  G GLGL + +  + L  G  SI S     T +   
Sbjct: 396 IAQQDLYKVMSVFGQADSKHSRKYEGTGLGLPLSKKLVELMHGTFSIKSEPNLGTIVTLT 455

Query: 788 IPSKE 792
            P K+
Sbjct: 456 FPHKQ 460


>gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 1053

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 156/379 (41%), Gaps = 19/379 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +     ++    I+     VA+    G I L N    + +    +       +
Sbjct: 147 EIAKRTKELAVSEELSRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGYTADEALGQPLL 206

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDD-----ERKSLQGTLELLSDSVLEYSIIPLPN 535
             +          +    L        ++     E  +  GTL  +    L  SI  L  
Sbjct: 207 TLLKMALPPELAAALTLPLRVEQQQLLNEAFYEAETYTRDGTLVPID---LGVSIFELNG 263

Query: 536 A-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q  +   +VT    AE+ L E      +A E+K+ F+ ++S+E+R+P+  IIG + L 
Sbjct: 264 QCQAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLA 323

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L  KQ  YV  I +S+T+LL ++NDILD + ++AG + + +    L ++L+ V
Sbjct: 324 LKTE---LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNV 380

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
                 K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G   V ++ 
Sbjct: 381 SMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQV 440

Query: 713 ARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                     +F+V + G  + E   +++F  F        R   G GLGLSI    + L
Sbjct: 441 GERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVEL 500

Query: 768 HGGHVSISSSDEGVTTINC 786
             G +S++S  +  +    
Sbjct: 501 MEGEISVTSKPDAGSCFTF 519



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 11/151 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +KE+ V+++L+ T  I+     ++AI D    +   N++ +  +          P    L
Sbjct: 152 TKELAVSEELSRT--IIEGAPSSVAIIDSQGLILLWNKTAITTYGYTADEALGQPLLTLL 209

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRG 410
              L         L  +  ++ + +       ++   +  +G  + +     I   N + 
Sbjct: 210 KMALPPELAAALTLPLRVEQQQLLN----EAFYEAETYTRDGTLVPIDLGVSIFELNGQC 265

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
                  ++T +   E + N       E ++
Sbjct: 266 QAAMFLRDVTARKAAEQELNEAKAKAEEAVE 296


>gi|296123452|ref|YP_003631230.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296015792|gb|ADG69031.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 576

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 125/267 (46%), Gaps = 31/267 (11%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L + N  L + ++IKN F+  +S+ELR+PL +I+GF+++L ++   +L  KQ +YV  I
Sbjct: 284 ELAQVNLRLFELNKIKNEFLATMSHELRTPLNSILGFSEVLLST--STLPDKQRRYVSNI 341

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LLNL+ND+LDLA +++G M+L+ S   + DL+     S+     + ++ +    
Sbjct: 342 QTAGKNLLNLINDVLDLAKIESGRMELHPSDFSIYDLVERQVGSLMPLAEKKHLELTSEV 401

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDN---------- 716
             ++     D  +L QI   +LSNA+ F+  G  V +K        + +           
Sbjct: 402 SPEVPLLWQDAGKLQQILGNLLSNAIKFTPDGGKVRVKVDLCPAERSPEEQTETIEAGDA 461

Query: 717 ----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--------RGQRRGVGLGLSIVESF 764
                 F   V++ G  IP +  + VF +F               +  G GLGLSIV   
Sbjct: 462 PPVLDHFALIVEDTGIGIPLEEQERVFEKFRQGQSTPGQKDLLTREYEGTGLGLSIVREL 521

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
             L GG V + S     +     +P K
Sbjct: 522 SRLMGGEVRLQSEFGKGSVFTVVLPLK 548


>gi|119898108|ref|YP_933321.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119670521|emb|CAL94434.1| conserved hypothetical two-component hybrid sensor and regulator
           [Azoarcus sp. BH72]
          Length = 1014

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/541 (19%), Positives = 192/541 (35%), Gaps = 57/541 (10%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E   + Q       L N+  A+   +    + F N +   L ++  A     P   EL
Sbjct: 324 QAERRADTQRQWLEVTLANIGDAVVTVNDEVRVSFMNAAAEALLDVRAAAAIGQP-VAEL 382

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------ 409
           L  +  ++   E L          +   + E      H  +G    V VT+ P       
Sbjct: 383 LTLVDGSSS--EPLACPLHAAFSLARTVAVEGEPAVRHR-DGTLQAVEVTATPIKDHRER 439

Query: 410 -GGTIWMFENLT---VQVDLETK----------------------YNTLVKVQGETIDHL 443
             G + +  +++    +   E +                            +        
Sbjct: 440 VVGGVMVLRDVSVGRAREHAEREAYAALDRRVAERTRALDRTMSVLRESTTLLRTIAAST 499

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            E +     DGRI + NPA          ++                 +  +   +    
Sbjct: 500 PELIVAKSRDGRIMMINPAALQAMGMSRAQVVGRKEEELFGDAEDIRRSAENDRRVIETG 559

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEK 558
                +ER+++Q             +  PL +AQ      +    ++T+  RA++ L + 
Sbjct: 560 RPVVVEERRTVQE-----GARTYLVTKSPLRDAQGQVFGLVGVAKDITERKRAQQDLEQL 614

Query: 559 -------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                       +A+  K+ F+  VS+ELRSPL  + G++ +L  S+             
Sbjct: 615 LAAEHRLRGEAERANRAKDEFLAIVSHELRSPLNALKGWSQVLIGSREPDAALVARAAEA 674

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               +      L++D+LD + + +G + L    + L D++N V         + +I ++ 
Sbjct: 675 I-KRNIDHQTRLIDDLLDSSRIISGKLDLALHRVNLVDVVNAVLDLSTDSAQDKHIELRF 733

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             D +      D  RL Q+ S +LSNA+ F+ +G  V ++          SV +NG  I 
Sbjct: 734 ACDVEELYVDGDFDRLQQVLSNLLSNAIKFTPEGGRVQVRLLCTERSAELSVTDNGIGIE 793

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
            D    VF+RF        RR  G+G+GL++V + + LHGG V  SS+           +
Sbjct: 794 PDFLPHVFDRFSQADTSMTRRYLGLGIGLALVRNLVELHGGTVQASSAGSNQGAMFTVIL 853

Query: 789 P 789
           P
Sbjct: 854 P 854


>gi|183222354|ref|YP_001840350.1| putative sensor kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912401|ref|YP_001963956.1| two component response regulator sensor histidine kinase subunit
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167777077|gb|ABZ95378.1| Sensor histidine kinase of a two component complex [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780776|gb|ABZ99074.1| Putative sensor kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 791

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/482 (20%), Positives = 198/482 (41%), Gaps = 29/482 (6%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D    ++  N ++     I L+ +      + L E L              +K+ I S  
Sbjct: 162 DDQYVIRRINLAYERSTGIKLSMIQGKTPIELLGEELGGTVI-------NNFKKAIQS-- 212

Query: 383 KSSETHKDTWHLPNGQTLHV-IVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKVQG 437
           K + ++++++ +P G  + +  +T     G     +   +++T Q   E       +   
Sbjct: 213 KKTISYEESFTMPAGTKIWITELTPIEVEGKYKYIVGASKDITEQKLAENALKEYNERYA 272

Query: 438 ETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
             ++  S+G   +   +  +  S   +      E+    P  + +++       +     
Sbjct: 273 LILEASSDGWFDWDLVNNTVIYSRRWWLEFGNDEKPENVPIDYWQSLIHPDDVGWVSEFL 332

Query: 497 WDLFAAIITSFD---DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             + A+   +F+     +K       +LS   ++         + + +  ++T++ + E 
Sbjct: 333 ETILASQRETFEFTFQMKKRKGNFAHVLSKCYIQRDASG-NKIRLLGSNTDLTETKKIEY 391

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A+  K +F+ ++S+E+R+PL  IIGFT+LL  S    L  +Q +Y++ I
Sbjct: 392 TLRYAKELAEAANIAKGNFLANMSHEIRTPLNGIIGFTELLLNS---PLQEEQKEYLKNI 448

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL LVN ILD + +D+G ++       L DL+               I + +  
Sbjct: 449 FFSGKSLLELVNQILDFSKIDSGKLEFESINTNLIDLVQSTLDLFQVSAASKGIALHIQI 508

Query: 674 DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGS 728
           D  L  +V+ D  R+ QI S ++ NA+ F+ +GS  V L+    NGD++   F V + G 
Sbjct: 509 DPNLPKYVSLDPLRIRQILSNLIGNAIKFTHEGSVKVSLQQMERNGDYVTISFEVSDTGI 568

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  ++   +F+ F         +  G GLGL+I    +      ++I S     +  + 
Sbjct: 569 GIDMNVGSRLFDSFSQADTSITRKYGGSGLGLTITNELLLKMNSKLTIQSELGKGSQFSF 628

Query: 787 RI 788
            +
Sbjct: 629 PL 630


>gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
 gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
          Length = 1356

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/413 (21%), Positives = 174/413 (42%), Gaps = 31/413 (7%)

Query: 401  HVIVTSNPRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            H    S+     +++F     N+  +   E +     +     I +++ G+     +  +
Sbjct: 689  HQHTYSHKEIELLFVFAQMLVNIQKRKQSEMRLFQQEEKFRNIISNMNLGLLEVDLNEHV 748

Query: 457  KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              +N  F  +    E     G    ++        NESD   L     +       S + 
Sbjct: 749  LHANQTFCQMAG-YELEDFIGRKATDL------LLNESDKEKLLIKSESRKSGVSDSYEL 801

Query: 517  TLELLSDSVLEYSIIPLPNA-------QTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
              +  +     + I   PN         ++   +++TD  R E  L  + E   K+   K
Sbjct: 802  KYKRPNGEYRWWFISGAPNYNDKNELIGSIGIHLDITDQKRLEEELIRQREEAEKSKRAK 861

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
              F  ++S+E+R+P+  I+G  + L  S   +LN +Q++Y++ I  S++ L+ ++ DILD
Sbjct: 862  EIFFANMSHEIRTPMNAIVGMGEQLAKS---ALNDQQNKYIKAIQDSASHLMVIIKDILD 918

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSF-VADRQRL 687
            L+ ++AG M +        +++    + +  K     +   ++  D ++    + D  R+
Sbjct: 919  LSKLEAGKMTIEAIGFKPKNIIEHTFEMMKAKAESKGLDYSILNYDSRINEVLIGDPIRI 978

Query: 688  LQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             QI   +LSNA+ F+ KG  V+    +     + +  FSV + G  + +D   S F ++V
Sbjct: 979  SQILLNLLSNAIKFTEKGKVVLQCHSISETESHQEIKFSVIDTGIGMDDDFVNSNFEKYV 1038

Query: 744  SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPSKE 792
                   R   G GLGLSI +  + L GG + I S     T ++   ++P  +
Sbjct: 1039 QEDTTITRKFGGTGLGLSISKELVQLMGGQMKIESQKGLGTIVSVNFKLPKGQ 1091



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 120/338 (35%), Gaps = 43/338 (12%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + ++L E           +     +  +    + + D+ G I +AN  Y + T+ +    
Sbjct: 145 VTADLKELIETISHQKESLENLSYVASANLDGIIYTDEEGYITYANEGYLRQTQYDLSEI 204

Query: 234 ----QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFG 287
                  +G   +  KEE+KK + S    E    E     + G     ++    V +  G
Sbjct: 205 IGKTPLELGRGEETQKEELKKMLDSFFKKEPYKVELKHYKKDGTWFWARVNGQAVSDKNG 264

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILHNLTV--AIAIFDQNRYLQ---FHNRS--FV 336
           E      +  DV++E    +++    +    +       +++ +       F N++  F+
Sbjct: 265 EFLHYFTLVEDVTEEKISKNKIQEFEKTFRQVLEFSGDNVWEHDFRTNKTSFSNKAKNFL 324

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHL 394
            L   D +       N  +            Q ++    EN    YK  E  +H+  + +
Sbjct: 325 GLT-FDQSVNVGEVWNSHI-----------HQEDYPILVENDLR-YKRGEISSHQLEYRM 371

Query: 395 --PNGQTLHV-----IVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              +G    V     ++  +P+G     I    ++T Q + E +  +L K  G  ++ L 
Sbjct: 372 LHEDGSIKWVKDRGIVIEKDPQGIPLKIIGTHSDITEQKNAEKELVSLNKKLGSVLNELK 431

Query: 445 EGVA-VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           + +  V  PD       P+   L++ + + L      R
Sbjct: 432 DVIWSVSYPDLSGIFFTPSAEDLFELDMDILLEDNSWR 469


>gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1286

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 163/348 (46%), Gaps = 12/348 (3%)

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            GR  + +  + S   T    +    H+R           E  G        T+   ++  
Sbjct: 781  GRSYVVDDIYHSDMTTCHTDILAQFHVRANVIMPLLCGAELWGLLCIHQCATTRHWQQSE 840

Query: 514  LQGTLEL---LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +  T +L   L+ ++ + S++     +            ++ + L   N+ L +A  +K+
Sbjct: 841  IDFTQQLATQLAIAIQQASLVEQLQQELAERHQAELKLTQSNQQLAISNQELARATRLKD 900

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+ ++S+ELR+PL  I+G T+ L+    G +N+KQ + +E I  SS+ LL+L+NDILD+
Sbjct: 901  EFLANMSHELRTPLNAILGMTEGLQEGVFGMINNKQFKALETIERSSSHLLDLINDILDV 960

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
            A ++AG +KL+ +TI + +L       I  +  +  I++++     L     D +R+ Q+
Sbjct: 961  AKIEAGQIKLDCTTISVANLCESSLVFIKQQALQKRIQVEIKIPFNLPDLFVDERRIRQV 1020

Query: 691  FSKILSNAMDFSSKGSTVILKAARDNGDF-------IFSVKNNGSSIPEDMCKSVFNRFV 743
               +L+NA+ F+ +   + L+  + + D          +V + G  I ++    +F  F+
Sbjct: 1021 LINLLNNAVKFTPEAGRISLEVTQLSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFI 1080

Query: 744  SNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                    Q  G GLGL++V+  + LHGG V ++S     +     +P
Sbjct: 1081 QIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTSELGIGSCFTIELP 1128


>gi|150017295|ref|YP_001309549.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903760|gb|ABR34593.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 625

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 163/386 (42%), Gaps = 17/386 (4%)

Query: 423 VDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             L+  Y  + K +G+    +D + EGV +   + +I   N     L      +   G  
Sbjct: 208 KKLKDTYKLIEKKKGQLLYILDSIYEGVFILDTNYKILFVNKGVEKLLNINNFKSILGRD 267

Query: 480 IRNIAATCSRYYN--ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +  I      Y +   +    +    I+    E K +Q    ++  ++   +I    N  
Sbjct: 268 LFEIGIVHKDYRDIILNRFEKVLKHNISVPIIEEKMIQFDGNIIPVNIYSGAIEYEGNPC 327

Query: 538 TMLTFVNVTDSVRAE------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +    ++++  ++E      +  +   +   + D++K  F  ++S+E R+PL  ++   
Sbjct: 328 ILSVIRDISEHKKSENLRLKIQEQSRLLDKAAEYDKLKTEFFANLSHEFRTPLNVMLSTL 387

Query: 592 DLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            LL              K S+Y   +  +   LL LVN+++D+  +DA   KL+     +
Sbjct: 388 QLLNLIGANKTNTDSKDKISKYYNIMKQNCYRLLRLVNNLIDITKIDAEYFKLSLKNENI 447

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              + ++  S+        + I   ++ +      D  ++ +I   +LSNA+ F+S G +
Sbjct: 448 ISTIEDITLSVTDYAKNKGLDIIFDTNVEEKLMACDADKIERIMLNLLSNAIKFTSSGGS 507

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           + +     +   I SV++ G  IP+D   S+F RFV        +R G G+GLS+V+S +
Sbjct: 508 IFVNILDKDSSIIVSVRDTGVGIPKDKQLSIFKRFVQVDKSLSRKREGSGIGLSLVKSLV 567

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            LH G + I+S     +     +P K
Sbjct: 568 ELHNGTIKINSEYGKGSEFIIELPVK 593


>gi|144899289|emb|CAM76153.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Magnetospirillum gryphiswaldense MSR-1]
          Length = 753

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 141/281 (50%), Gaps = 3/281 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R+S    +E+       +    +  A+++ T +N    +R  R +   N  L ++D  K+
Sbjct: 468 RQSFARWVEVRRGHSRPWPRWKVEIARSLRTALNDV-ILRQLRTIRLLNLQLAESDRAKS 526

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ H+S+ELR+PL  ++GF+++L     G +  +QS+ + ++  ++  LLN++ND+LDL
Sbjct: 527 RFLAHMSHELRTPLNAVLGFSEMLGMGIYGQVVQRQSEAIGHVRDAARHLLNMINDVLDL 586

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + ++AG   +    + ++ L    +Q +++   E  + I+V     L    ADR+ LLQI
Sbjct: 587 SKIEAGGFDIEDEELEISALATYAQQLLSSLTREAEVTIRVEVPSALPRLRADRRMLLQI 646

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
              +LSNA+ F+    +V +    D      +V + G  I  D    V   F        
Sbjct: 647 LINLLSNAIKFTPPQGSVHVGCREDASGLCLTVHDTGIGIAADQLARVLEPFRQTEDNME 706

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             R+G GLGL IV+S + LHGG + +SS+    T +    P
Sbjct: 707 IARKGTGLGLPIVKSLVELHGGTIHLSSTLGQGTCVTLTFP 747


>gi|28900985|ref|NP_800640.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|260366196|ref|ZP_05778656.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260879838|ref|ZP_05892193.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AN-5034]
 gi|260894512|ref|ZP_05903008.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus Peru-466]
 gi|28809431|dbj|BAC62473.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086398|gb|EFO36093.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus Peru-466]
 gi|308091833|gb|EFO41528.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AN-5034]
 gi|308114853|gb|EFO52393.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 873

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 162/368 (44%), Gaps = 16/368 (4%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +  +    E  +H  + + +  PDG I   N AF  L +     +   +          
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSP----GELLQ 289

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFV 543
               +++   L +  + S    R  +    +      +E  + P+ +      + +    
Sbjct: 290 GEDTDANTVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVER 349

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    E+ L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L  ++     
Sbjct: 350 DITDRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP 409

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +  +  S+  L+ ++NDILD + V+AG + L      L  L+       A +  
Sbjct: 410 ---RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQAD 466

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           + N+++ V     + +  V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FS
Sbjct: 467 KKNLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESELGFDFS 525

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S    
Sbjct: 526 VTDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGN 585

Query: 781 VTTINCRI 788
            +  +  +
Sbjct: 586 GSCFSFSL 593


>gi|29347433|ref|NP_810936.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339333|gb|AAO77130.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 720

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 110/517 (21%), Positives = 216/517 (41%), Gaps = 39/517 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            +   + + +     ++ N+ V  A    IFD    +            ID  +   NP+
Sbjct: 212 HERSRLLEIMRSYSSLVENMPVLYARVELIFDPGGRI------------IDYVYREVNPT 259

Query: 352 NDELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSN 407
            ++ +   E +          ++     + +S    +      ++L   +T L VI   +
Sbjct: 260 FEKYILPKEKILGKKYSELNPDYSPELPDRYSELNDNRQITFQYYLEKTKTHLTVISIHS 319

Query: 408 PRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
              G + +F  + T  V  +    +        +D        +     +   N +   L
Sbjct: 320 KTKGCVDVFGVDNTELVLTQQMLKSTNHKLSAALDAADMTPWKWDLRTGLLSCNVS-HDL 378

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS---- 522
           + TEE     G  I    + C     + D   +  A     + E + ++    +      
Sbjct: 379 YVTEEEVTHDGNLIIVPTSACFAKICDEDRERVRDAFEHLANGETQKMREEYRVGRQWLP 438

Query: 523 ----DSVLEYSI-IPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
               +  +E    +   +A       + T + VT     E AL +      +A+ +K+SF
Sbjct: 439 SPQQNEWVEVRAAVDERDANGKPLSLIGTSMTVTQRKEMEEALVQAKVKAEEANTLKSSF 498

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+GF+ LL +++ G    KQ +Y+  I  ++T+LL L++D+LDL+ 
Sbjct: 499 LANISHEIRTPLNAIVGFSSLLVSAERGISEEKQ-EYINIIENNNTLLLQLISDVLDLSK 557

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++AG M+ +Y+ I ++ L  E++ +   +  ++ I I            ADR RL+Q+  
Sbjct: 558 IEAGTMEFDYAPIDVHGLFIELEDTFRLRNKKSGICICYHRRTTECVVKADRNRLVQVMM 617

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +++NA+ F+ +GS       R++G   F V + G  IPE+  + +F  FV        +
Sbjct: 618 NLMNNAVKFTGEGSIEFGFDVREDGFLHFYVTDTGCGIPEERLEEIFGNFVKLNSF--VQ 675

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+I  + +   GG +   S     +T    +P
Sbjct: 676 GTGLGLTICRAIVERMGGKIGAVSRLGQGSTFWFTLP 712



 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 106/335 (31%), Gaps = 43/335 (12%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIR---QRNSLAKKVNE 57
           ++ G+       G++  T F            ++   +I +I L R   +R+ L  ++  
Sbjct: 164 LLLGLCPDDTVFGMKPPTFFERNKYYLALFFSLMALAVIYVIWLRRALHERSRL-LEIMR 222

Query: 58  TYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFEN 117
           +YS L E    L     L+ +     I +  ++  P     +  +  I           +
Sbjct: 223 SYSSLVENMPVLYARVELIFDPGGRIIDYVYREVNPTFEKYILPKEKILGKK------YS 276

Query: 118 WLKFHHYIKLSKATEKLRKEGQ-SFD--LVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
            L   +  +L     +L    Q +F   L     +   I I  +  G       + + G+
Sbjct: 277 ELNPDYSPELPDRYSELNDNRQITFQYYLEKTKTHLTVISIHSKTKG------CVDVFGV 330

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV-- 232
             +  E  L  + L +         D+ D   W  D    +L  N+S+      E +   
Sbjct: 331 --DNTELVLTQQMLKSTNHKLSAALDAADMTPWKWDLRTGLLSCNVSHDLYVTEEEVTHD 388

Query: 233 -----------FQKAIGESRKLFKEEIKK-RMISSSALEKNFCETVSTLEHGNNKSYKIV 280
                      F K   E R+  ++  +      +  + + +      L       +  V
Sbjct: 389 GNLIIVPTSACFAKICDEDRERVRDAFEHLANGETQKMREEYRVGRQWLPSPQQNEWVEV 448

Query: 281 RVLNSFGEA--------GIAIDVSKEITVNDQLTH 307
           R      +A        G ++ V++   + + L  
Sbjct: 449 RAAVDERDANGKPLSLIGTSMTVTQRKEMEEALVQ 483


>gi|157694430|ref|YP_001488892.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157683188|gb|ABV64332.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 612

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 149/390 (38%), Gaps = 32/390 (8%)

Query: 410 GGTIWMFENLTVQVDLETKYNTL--VKVQGETIDHLSEGVAVFGPDGRIKLSN-PAFRSL 466
           G     F +LT +++ E +  T    K     I ++++GV     +G I L N PA   L
Sbjct: 239 GQLATTFNHLTRELE-EAQLMTEGERKKLSSVIAYMTDGVIATNQNGAIILLNSPALELL 297

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             + E  L               + +  +  D     I   D            LS   +
Sbjct: 298 NVSRETALEMPITSLLGLEDTHTFEDLVENQDSMLLEIEREDQ-----------LSVLRV 346

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            +S+I   + +       + D    E           K D  +  FV +VS+ELR+PLT 
Sbjct: 347 NFSVIQKEHGKIDGLIAVIYDVTEQE-----------KIDAERREFVANVSHELRTPLTT 395

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +  + + L    +G       +++      +  ++ LVND+L L+  D+   + N     
Sbjct: 396 MRSYLEALAEGAIGD-KELAPRFLSVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWTN 454

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
               ++ V         E ++        +      D+ ++ Q+   I+SNAM +S +G 
Sbjct: 455 FIRFISLVIDRFE-MTKEQHVEFIRNLPQREIYVEIDQDKITQVLDNIISNAMKYSPEGG 513

Query: 707 TVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
            +      D      +FSVK+ G  IP+     +F RF        R   G GLGL+I +
Sbjct: 514 HITFTVDLDEEKSLVLFSVKDEGIGIPKKDMDKIFERFYRVDKARTRKLGGTGLGLAIAK 573

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +  HGG +   S +   TT+   +P  E
Sbjct: 574 EMVQAHGGDIWADSIEGKGTTVTFTLPYNE 603


>gi|217971382|ref|YP_002356133.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217496517|gb|ACK44710.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1191

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/428 (20%), Positives = 172/428 (40%), Gaps = 20/428 (4%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW---MFENLTVQVDLETKYN 430
           W+ N     +S + ++ T +     T+ +  T       IW      +   ++  + + +
Sbjct: 512 WRRNALPARQSWKDYEYTIY-----TIVIASTIMILISIIWALYTHTHYRKRLLAKKELD 566

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             +K     +D +   + V      + + N ++ S++      +   T +     +    
Sbjct: 567 QQLKFMQSIVDAIPHPIYVRNEQHELTMCNESYLSVFNVTREDVLNKTTVEGANRSREAP 626

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
             + +   +    I  F D    +      +      YS         +  +++V+D V+
Sbjct: 627 DIDREYRQVLEDSIPIFRDRVLHVDERKYNIYHWFKSYSDEAGNIKGIIGGWIDVSDRVK 686

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQY 609
               L    E    A + K++F+  +S+E+R+P+  IIG  +L LK +K    +      
Sbjct: 687 LVEELEYAKEIADSASQAKSTFLATMSHEIRTPMNAIIGMLELALKRTKSQHFD---INS 743

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++    S+  LL L+ DILD+A ++AG + L+     L ++   V +       E  I +
Sbjct: 744 IKVAYDSANGLLELIGDILDIARIEAGQLYLSPVRSNLKNITTSVVRVFDGLAREKGISL 803

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VIL---KAARDNGDFIFSVK 724
           ++    +L    + D  R+ QI S ++ NA+ F+  GS  V +            +F+V 
Sbjct: 804 QLDFTPELTKDILVDPIRIKQILSNLIGNAIKFTHNGSVKVKIQSKTLVHAKRTLLFTVT 863

Query: 725 NNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  I E+  + +F  F           G GLGL I  S   + GG +++ SS    T 
Sbjct: 864 DTGIGISEEDQQKLFTPFSQAHGANNTYGGTGLGLMICHSLCEMMGGTLTLESSPNQGTK 923

Query: 784 IN--CRIP 789
           I+    +P
Sbjct: 924 ISMILTLP 931



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 57/152 (37%), Gaps = 15/152 (9%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L  K+L   +   + + D++   ++ R++  ++   N SY        +  +  + ++  
Sbjct: 560 LAKKELDQQLKFMQSIVDAIPHPIYVRNEQHELTMCNESYLS---VFNVTREDVLNKTTV 616

Query: 243 LFKEEIKKRMISSSALEKNFCETVST----LEHGNNKSYKI--------VRVLNSFGEAG 290
                 ++         +   +++      + H + + Y I            N  G  G
Sbjct: 617 EGANRSREAPDIDREYRQVLEDSIPIFRDRVLHVDERKYNIYHWFKSYSDEAGNIKGIIG 676

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
             IDVS  + + ++L +  EI  + + A + F
Sbjct: 677 GWIDVSDRVKLVEELEYAKEIADSASQAKSTF 708


>gi|229824433|ref|ZP_04450502.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
 gi|229786034|gb|EEP22148.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
          Length = 616

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 162/389 (41%), Gaps = 33/389 (8%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G        L+V+V    +     + + +  + ++++GV      G + L N     L  
Sbjct: 239 GELAKTLNELSVKVKDSQELIESERQRLDGILRYMTDGVIATDRRGNVLLVNERALQLLG 298

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-- 526
            ++      + IR +     R  ++    DL         D+R+ L   ++    S+L  
Sbjct: 299 IDQQSAIGISIIRLL-----RLKDQYTLTDLLG-------DDREILMDWVDHGEYSILKG 346

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E+S+I             +TD    E           K ++ +  FV +VS+ELR+PLT+
Sbjct: 347 EFSVIRRETGFVTGVVCVLTDVTEQE-----------KTEQERRDFVSNVSHELRTPLTS 395

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I  +T+ L+            Q++  I   +  ++ ++ ++LDL+ +  G  KLN   I 
Sbjct: 396 IKSYTEALREGAWQD-EVIAPQFLNVIQLETDRMMRMIGNLLDLSKIHEGQYKLNLEYID 454

Query: 647 LNDLLNEVKQSIATKMHE----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              +++ +       + +       ++K     +      D+ R+ Q+   IL+NA+ +S
Sbjct: 455 FKRMVSHILDRFEFMLEQNPDQKKFKLKRDFTSREIYLEIDQDRVTQVIDNILNNAIKYS 514

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
             G  +++K    +     S+K+ G  IP+     +F RF         ++ G GLGL+I
Sbjct: 515 PDGGVIVVKIEDSHSHVHLSIKDQGLGIPQKDIPHLFQRFYRVDKARSREQGGTGLGLAI 574

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  I LHGG +  +S +   +T    +P
Sbjct: 575 SKEIIELHGGKIWATSVEGKGSTFGFDLP 603



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 9/133 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +  +      IL  +T  +   D+   +   N   ++L  ID      +     ++ 
Sbjct: 256 QELIESERQRLDGILRYMTDGVIATDRRGNVLLVNERALQLLGIDQ----QSAIGISIIR 311

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            LR  ++          +E +       E     + +  G+   +   +    G + +  
Sbjct: 312 LLRLKDQYTLTDLLGDDREILMDWVDHGE-----YSILKGEFSVIRRETGFVTGVVCVLT 366

Query: 418 NLTVQVDLETKYN 430
           ++T Q   E +  
Sbjct: 367 DVTEQEKTEQERR 379


>gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 934

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 129/687 (18%), Positives = 224/687 (32%), Gaps = 79/687 (11%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            +      T    ++L  + + F+ L DS    V   D  G I  AN  + + T      
Sbjct: 109 ALRLAQDRTRTTLEQLQANETRFRRLVDSNIIGVVGCDIKGAITSANDEFLRMTGFSRAD 168

Query: 233 FQKAIGESRKLFKEE----IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL----N 284
                    ++   +     +  M    +  KN     + +     +   +V       +
Sbjct: 169 VLAGRVRWDEMTPADLKPLDEPAMEELLSKGKNTAYEKALIGKDGRRVPVVVGAALLRND 228

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH-----NRSFVELW 339
                   +D+++      +LT  Y +   L  A+ + +    +        +  F  +W
Sbjct: 229 PESVISFVLDLTRLRLTEQRLTVQYAVTRVLAEAVTVRESVAPILQALCQSLDWEFAIIW 288

Query: 340 EIDLA-----FLATNPSNDELLEFLRS---------ANKLPEQL---NWKTWKE------ 376
            +D       +L + P++  LL+  RS            LP ++       W E      
Sbjct: 289 TVDQQAGVLRYLESWPTDTLLLDEFRSLKQPITFTPGMGLPGRIWATGQPAWIECLATDP 348

Query: 377 ---NIFSVYKSSETHKDTWHLP-NGQTLHVI------VTSNPR------GGTIWMFENLT 420
                 +  ++       + +  + Q L VI           +      G          
Sbjct: 349 NFPRAAAAQRAGLQSAMGFPIRLDDQVLGVIEGFSTHGRPPDQDLLQLMGAIGSQIGQFM 408

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   E        +    + H      +     RI   NP +  L+             
Sbjct: 409 ERKRAEESLRQSQALFDRFMSHTPVAAWIVDQASRIVYLNPTYFRLFNFPAQ-------- 460

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQ-- 537
             I  T +  Y               F   E      T      S  E+ +   P  Q  
Sbjct: 461 DAIGKTVAELYPPQFAEQFLQNNRPVFTHQEVVETIETAPRTDGSTGEFLVYKFPIPQEP 520

Query: 538 -----------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                               +  R  +   E  E    A+ IK+ F+  +S+ELRSPL  
Sbjct: 521 DELLLGGVALDITERKQAEAERERLLQREQEAREQAESANRIKDEFLAVLSHELRSPLNP 580

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G+  LL+T        K  Q ++ I  ++ +   L+ D+LD++ +  G M LN   + 
Sbjct: 581 ILGWAKLLQTRPFAP--EKAQQALQTIERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVD 638

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  ++    +++        I+++      +G    D  RL QI   +LSNA+ FS  G 
Sbjct: 639 LVTVIEAALETVQLSAEAKGIQLERHLANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGH 698

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            V ++  R   +    V++ G  I       VF  F     R  R   G+GLGL+IV   
Sbjct: 699 RVDIRLERVGAEAQMQVRDTGKGINPSFLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYL 758

Query: 765 INLHGGHVSISS-SDEGVTTINCRIPS 790
             LHGG V   S  +    T   R+P 
Sbjct: 759 TELHGGTVQAESGGEGQGATFKVRLPL 785



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 61/183 (33%), Gaps = 26/183 (14%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           + F       +   +++ G            ++     +  E     + L    ++F   
Sbjct: 380 EGFSTHGRPPDQDLLQLMG------------AIGSQIGQFMERKRAEESLRQSQALFDRF 427

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSA 257
                   W  DQA  I++ N +Y +         Q AIG++  +L+  +  ++ + ++ 
Sbjct: 428 MSHTPVAAWIVDQASRIVYLNPTYFRLF---NFPAQDAIGKTVAELYPPQFAEQFLQNNR 484

Query: 258 LEKNFCETVSTLEHGNNKS----------YKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
                 E V T+E                + I +  +     G+A+D+++      +   
Sbjct: 485 PVFTHQEVVETIETAPRTDGSTGEFLVYKFPIPQEPDELLLGGVALDITERKQAEAERER 544

Query: 308 TYE 310
             +
Sbjct: 545 LLQ 547


>gi|156743247|ref|YP_001433376.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156234575|gb|ABU59358.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 1003

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 158/385 (41%), Gaps = 42/385 (10%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +  E +Y  LV++         E + V   + +I   NPA   L                
Sbjct: 357 IQSEARYRQLVEIS-------PEAIIVHDNE-QIIYINPAGARLLGY------------- 395

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTM 539
             A  SR         L  A+    DD     +  L L +   +   +I  P   +  ++
Sbjct: 396 --ADSSRLIGSPAAPFLPTALHNKTDDGAIRYERDLTLSNGQTVTLDLIAAPFVADGASV 453

Query: 540 L--TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                 N+T+  + E AL    +   +A   K+ F+ ++S+ELR+PLT IIG+ DL+  +
Sbjct: 454 WQVVAHNITERKQTEEALRNARDWAEEASRAKSRFLANMSHELRTPLTTIIGYADLITLA 513

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 ++    +  +  +   LL ++ND+LDL+ ++AG M+++ +   +  L  EV  S
Sbjct: 514 TQQGEFNRIRDDITRVRNAGKHLLAIINDLLDLSKIEAGRMEIHIAPFSVPALAEEVVAS 573

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--- 714
           +          + +  D  +G   +D  R+ Q+   ++ NA  F+  G  V +  AR   
Sbjct: 574 MDLLAQTRRNTLILTIDPTVGVMHSDDVRVRQVLYNLVHNACKFTEDG-VVTVTIARSAL 632

Query: 715 --------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
                    +   +F++ + G  + +D    +F  F         +  G GLGL++    
Sbjct: 633 ESTVHVNGHSARIVFTISDTGIGMTDDQMARLFQEFTQADPTTMRKYGGTGLGLALSRHL 692

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           + + GG ++++S     TT    +P
Sbjct: 693 VRMLGGDITVTSKPGVGTTFVVTLP 717


>gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1116

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 3/241 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  KN AL++ D++K+ F+ + S+EL++PL  IIG  + L     G+L+      +  I
Sbjct: 430 ELETKNTALQRLDQLKDEFLANTSHELKTPLNGIIGIAESLMDGVTGNLSDATRFNLSLI 489

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S   L  LVND+LD + +    ++LN   + + ++ + V       + +  I +    
Sbjct: 490 VSSGRRLHQLVNDLLDFSQLKHHNLQLNIKPVGIREVTHVVLTISQPLVGKKPIELINGI 549

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           +  +    AD  R+ QI   ++SNA+ F+ +G T+ + A   N      V + G  I  D
Sbjct: 550 NPDIPPVDADENRVQQILYNLVSNAIKFTEQG-TIEVSATPVNDRLEIHVVDTGIGISPD 608

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F        R   G GLGL+I +  + LHGG + + S+    +     +P  
Sbjct: 609 KINRIFESFEQADGSITRHYGGTGLGLAITKQLVELHGGIIKVDSTPGVGSRFTFTLPLS 668

Query: 792 E 792
           +
Sbjct: 669 Q 669


>gi|307297683|ref|ZP_07577489.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916943|gb|EFN47325.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 416

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 163/380 (42%), Gaps = 32/380 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++   +     +T ++      D+LS+   +   DG+I+ +N A + L   +   L    
Sbjct: 60  ISSMKEEIALLDTRIENLVMIFDNLSDAFLIASEDGKIEYANKAAQELSSKQLVGLR--- 116

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
               I+     YY      DLF   + + + +   +  T+     SV    I+ +     
Sbjct: 117 ----ISEGIDSYY----IGDLFEDSVRTQESQESEI--TIYYPRRSVRNCKIMRVTLKSE 166

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +           L       ++ + ++  FV +VS+ELR+PLT+I G+ + L    
Sbjct: 167 VRYLI-----------LLRDITKEKEVEAMRRDFVANVSHELRTPLTSIHGYAETLAEDD 215

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L        +++  I   S  +  L+ND+LDL  +++G    +   + L +++N V + +
Sbjct: 216 LED-KETVYRFLSIIENESARMTRLINDLLDLEKLESGEASFSKEDVELGEVVNYVMRIV 274

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS---SKG-STVILKAAR 714
                E N+ I V  D  +     D  RL+Q+   ++ NA+ ++     G   + L+A  
Sbjct: 275 EPLASEKNVSINVDVDEGI-FVEGDFDRLVQLLLNLVDNAVKYTFAKEHGPKEIWLRAYA 333

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
            N   +  V++ G  IPED  K +F RF         +  G GLGL+I    +  HGG +
Sbjct: 334 QNNSAMIEVEDTGVGIPEDSLKHIFERFYRVDKARSRKMGGTGLGLAITRFIVEKHGGTI 393

Query: 773 SISSSDEGVTTINCRIPSKE 792
           S+ S     T +  ++P K+
Sbjct: 394 SLESEYGTGTILKVKLPLKK 413


>gi|59713420|ref|YP_206195.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
 gi|12620414|gb|AAG60694.1|AF319618_1 RscS [Aliivibrio fischeri]
 gi|59481668|gb|AAW87307.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
          Length = 927

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 174/393 (44%), Gaps = 30/393 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + LT++ +L        K+     ++  + + +    GR+   N ++ +L       +
Sbjct: 249 LIKTLTIKRELIRSEKEKAKLALVA-EYAHDAIFILDKQGRLTWINQSYSALSGNTLEDI 307

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIIT----SFDDERKSLQGTLELLSDSVLEYSI 530
             G  + +I          ++   L  ++ T    SF+       GTL       ++ SI
Sbjct: 308 E-GKDLPSILQL--DKIKHANIIILLQSLETGTSISFELTNHHKDGTL-----FWIDVSI 359

Query: 531 IPL--PNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P+  PN   M       ++T     E  L +       ++  K++F+  +S+ELR+PL 
Sbjct: 360 TPILEPNGNIMHYIAVERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLN 419

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G   +++++     + +Q + ++ +  S   LL L+N+ILD + ++   ++LN+++ 
Sbjct: 420 GILGMAQIIESNIK---DKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASF 476

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              D++  +  +  +      ++  + +       F+ D+ R+ QI   ++SNA+ F+ +
Sbjct: 477 YFVDIIEPITNTYLSVCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHE 536

Query: 705 GSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
           GS + L        +        +K+ G  I E+  K +F  ++       R   G GLG
Sbjct: 537 GS-ITLNFSHTLTGKGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLG 595

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+IV+   ++  G++S+SSS+   +     +P 
Sbjct: 596 LAIVKQLTDIMRGYISVSSSEGKGSCFTLVLPL 628


>gi|16801705|ref|NP_471973.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
 gi|16415180|emb|CAC97870.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
          Length = 591

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 152/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIDATFETKTMQQKEIILYFPREMILDASVSPILAENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENTEPVDVDEVIEQSSRTIFEMATEKN 462

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I++ V         +  DR +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IQVSVPEKTIPPIIIETDRDKLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|315646393|ref|ZP_07899511.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315278036|gb|EFU41356.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 477

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 166/415 (40%), Gaps = 29/415 (6%)

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLS 444
           E   D      G  L+++ TS+  G     F ++  +++   +  N   +     +  +S
Sbjct: 79  EAANDIRKGKYGTRLNLV-TSDEIGELANTFNHMAAELETNIRNLNHEKEHLSSVLRSMS 137

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           + V  F   G++ L NP  + + KT    L     ++      +         +L+ + +
Sbjct: 138 DAVITFDHHGQVILVNPPGQEIMKTW-KGLQWDDELQ--GGGWAADVMPKPLSELYYSTV 194

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
               D+   L      +   +    + PL             D +R    +         
Sbjct: 195 NEGRDQSADLH-----VKQGIWSAHMAPL----------YADDMIRGAVVVLRDITEQVT 239

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            ++++  F+ +VS+E+R+PL+ + G+++ L      S   +  + ++ I   S  +  LV
Sbjct: 240 LEKMRTDFIANVSHEIRTPLSMMQGYSEALLDGMAAS-PEESRELIQVIHEESLRMGRLV 298

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVAD 683
            D+LDL  ++AG  +L+   +   +L   V +  A +  E  I +++      L    AD
Sbjct: 299 KDLLDLTRMEAGHAELSLRKMDAGELCERVYRKFAVRAKEREIDLQLNKLHPNLMLEAAD 358

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVF 739
             +L Q+ + +L NA   +  G  + + A R    D+      + + G  IP +    VF
Sbjct: 359 EDKLEQVLTNLLDNAFRHTPSGKQIQITADRITLLDDEALQVKICDQGVGIPPEDLPFVF 418

Query: 740 NRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF        R    G G+GL+IV++ +  H G ++ +S     T     IP K
Sbjct: 419 ERFYKADKARVRGETVGTGIGLAIVKNIVTAHHGTINATSEVGKGTIFTMIIPIK 473



 Score = 42.2 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 82/246 (33%), Gaps = 38/246 (15%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    +N +  H   +L +++ A+  FD +  +   N    E+ +    +      +DEL
Sbjct: 117 TNIRNLNHEKEHLSSVLRSMSDAVITFDHHGQVILVNPPGQEIMK---TWKGLQ-WDDEL 172

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPRGGT 412
                +A+ +P+ L      E  +S            H+  G     +  +   +   G 
Sbjct: 173 QGGGWAADVMPKPL-----SELYYSTVNEGRDQSADLHVKQGIWSAHMAPLYADDMIRGA 227

Query: 413 IWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + +  ++T QV LE            +  T + +     + L +G+A    + R      
Sbjct: 228 VVVLRDITEQVTLEKMRTDFIANVSHEIRTPLSMMQGYSEALLDGMAASPEESR------ 281

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRY-------YNESDGWDLFAAIITSFDDERKSL 514
               +    E  L  G  ++++                + D  +L   +   F    K  
Sbjct: 282 --ELIQVIHEESLRMGRLVKDLLDLTRMEAGHAELSLRKMDAGELCERVYRKFAVRAKER 339

Query: 515 QGTLEL 520
           +  L+L
Sbjct: 340 EIDLQL 345


>gi|304309740|ref|YP_003809338.1| predicted histidine kinase [gamma proteobacterium HdN1]
 gi|301795473|emb|CBL43671.1| predicted histidine kinase [gamma proteobacterium HdN1]
          Length = 895

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 126/271 (46%), Gaps = 10/271 (3%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            V+  S   L +A               E+ + E+   L KA++ K+ F+ ++S+E+R+P
Sbjct: 329 GVMVRSYFHLKDALLRKNAELSAYHSELEQKVEERTRKLEKANQAKSEFLANMSHEIRTP 388

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  ++G T+LL  ++   LN++Q QY   I  S+  LL ++NDILD + ++AG ++L   
Sbjct: 389 MNGVLGMTELLLGTE---LNTRQQQYTRTIHNSALSLLGIINDILDYSKIEAGKLELESV 445

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L  L+++     + K  +  I++   I+ G     V D  RL QI   +  NA  F+
Sbjct: 446 PFNLEILVDDCTAIFSLKCAQKPIQLTSRIAPGTPIDLVGDPTRLRQILINLTGNAFKFT 505

Query: 703 SKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            KG   + ++   D+       FS++++G  + E+    +F  F        R   G GL
Sbjct: 506 EKGEICIGIEFLEDHSKQVRLKFSIRDSGIGLSEEQIGKLFQSFSQADTSTTRKYGGTGL 565

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GL+I +    L  G + + S      T    
Sbjct: 566 GLAICKQLAELMEGEIGVDSRLGHGATFWFT 596


>gi|170740901|ref|YP_001769556.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195175|gb|ACA17122.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 984

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 112/633 (17%), Positives = 230/633 (36%), Gaps = 53/633 (8%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKK--------NTETEGIVFQKAIGESRKLFK 245
           +     D +D  V        +  AN   ++                  +A       + 
Sbjct: 113 LLGKTLDCMDQGVILVGPDRTVQVANRRAREWLGLSEEFIAGRPSYREVRARARLSPHWG 172

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSKEITVNDQ 304
             +    +  S  +     T++   + +    +I  V    G     + D+++  +  D+
Sbjct: 173 TLVSDTPLQLSEEDPEATHTIAERRNADGTVLEIRTVRTEDGGLIQTLTDITERRSAEDR 232

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL----LEFLR 360
                E   +L +++    ++    + + S   +   +    A   ++  L    L+ +R
Sbjct: 233 YRLLAENATDL-ISLRPRGRDGR-VYVSPSSRAVVGWEPEEFAQLRADQRLHPDDLDRVR 290

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
                    + +   E+          HK   ++    TL +     P    I    ++T
Sbjct: 291 REVTALTPDSPRRTSEHRLR-------HKAGHYVWVESTLLLTKPGTPEEAVIVASRDVT 343

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   +              +   + +A    +G ++  +PA   +     + L   + +
Sbjct: 344 ARRAADAALRESEARHRLLAERTGDIIARADLNGVLRYLSPAVERVIGYPADELLGRSAL 403

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQT 538
            +I        +       ++A++ +    R   +  +      D  LE +   L +   
Sbjct: 404 SHIHPD-----DRPMVMRRYSALVEAGPGARAKFEYRVRHRHGHDVWLEVNPTVLYDEGD 458

Query: 539 ML--TFVNVTDSVRAERAL-----------TEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +    FV+V   V A +A+                    A + K  F+  +S+E+R+PL+
Sbjct: 459 LAPLGFVDVARDVTARKAVDAELAAAREQAEAARIQAEHASQAKTDFLASMSHEIRTPLS 518

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           ++IG+T++L       L  +Q      I ++ + LL +V+DILD + ++AG + L+    
Sbjct: 519 SVIGYTEMLLDDA--ELTQRQHLQASRIRSAGSALLTVVDDILDFSKIEAGQVDLDLVPF 576

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L+ L+      +        + I+V  D  L  + V D+ RL QI    L+NA+ F+ +
Sbjct: 577 ALDGLIENAVAIVRQLAERKGLEIRVELDPALPRALVGDQNRLRQILLNFLNNALKFTRR 636

Query: 705 GSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           G  V+      +G       FSV + G  I  +    +F RF       +R   G GLGL
Sbjct: 637 GRVVLAVEKAGDGAGGWPIRFSVTDTGIGIAPEQQARLFKRFSQVDGSIRREFGGTGLGL 696

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR--IP 789
           +I +  I L GG + + S+    +T      +P
Sbjct: 697 AISKKLIELMGGAIGVRSAPGEGSTFWFEVLLP 729


>gi|218887072|ref|YP_002436393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758026|gb|ACL08925.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1058

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 195/510 (38%), Gaps = 33/510 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRY-LQFHNRSFVELWEIDLAFLATNPSNDELLE 357
             + +       +  N  V   + D     ++  + +  E +      L T         
Sbjct: 349 RALRESEARYRGLFENNHVVALLIDPTTKAIRDASPAAAEFYGWPRDVLRTMH------- 401

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLHVIVTS-----NPRGG 411
            +   N LP      T    + S  +         H L NG T  V   +     +    
Sbjct: 402 -ISDINTLP----PGTLHGELSSAARGERQRFRFRHRLANGTTRDVESNTGTLVLHGEPL 456

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +  ++T Q   E             ++   + + +    G I  +NP          
Sbjct: 457 LYSIITDVTEQRRAEEALRHSELRLRMLVESAGDAIYLADGAGHILDANPEAEHQTGHTR 516

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
            +L   T + +I     +        +L +A   +F+   ++  GT   +   + +    
Sbjct: 517 EQLLRMT-LFDIDERLDQRVFARLRAELESARKATFETTHRTRNGTPLPVEVRMAQVEET 575

Query: 532 PLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                    +    + +   RAE  L    E    A   K  F+ ++S+E+R+PL  I+G
Sbjct: 576 GEAEGDPLLLAIVRDSSARKRAESELRCAKEVAEAASRTKGEFLANMSHEIRTPLNGIMG 635

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL+T       + ++ YV   + S   L  L+ DILDL+ ++AG ++L+        
Sbjct: 636 MLQLLQT---DPPKAMRTVYVGAATQSCRRLGLLLGDILDLSRIEAGKLELHDEPFEARA 692

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +L+EV+        E  + ++V  D ++      D  RL Q+   ++ NA+ F+ +G  V
Sbjct: 693 VLDEVRGLFEGPAAERGLTLRVSVDERIPRHLRGDAMRLRQVLFNLVGNAVKFTDQGEVV 752

Query: 709 I----LKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIV 761
           +    ++A+R  G   +F+V++ G  I E+  K +F  FV    A   + +G GLGL IV
Sbjct: 753 VEAWRVQASRSRGCRVVFTVRDTGIGIAEERLKDIFEPFVQAETASTRRYQGAGLGLPIV 812

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              + L  G V++ S+    T  +  +P +
Sbjct: 813 RRLVRLMCGTVTVESTPGAGTAFSVSLPFR 842


>gi|288942569|ref|YP_003444809.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897941|gb|ADC63777.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 706

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 147/374 (39%), Gaps = 14/374 (3%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     ++     +  S+ + +  P G I  +NPAF  +                 +   
Sbjct: 322 ELERQRRLTSSVFEASSDAIMLTTPSGEILSTNPAFERMTGYSGAEALGRNPRFLSSGLH 381

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            + +       +        +   +   G L     ++             +    ++TD
Sbjct: 382 DQTFYRDIWCAVITQGHWRGEIVNRRRDGELYNALLTIDAVHDEYGELQHYVGVTSDITD 441

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R E  L    E    A   K +F+  +S+ELR+P+  I+G T LL  S    LN +Q 
Sbjct: 442 RKRHEAELLAAKERAESAARAKTTFLSTMSHELRTPMHGILGMTQLLLES---DLNERQR 498

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + ++ +  S+  LL ++ DILD   +DA  ++L         ++ +V    A +  +  +
Sbjct: 499 RQLDTVKRSADTLLAILADILDYTRMDAEELQLQPGPCDPLRIIRDVMTVYAPQAEKKGL 558

Query: 668 RIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------NGDF 719
              + S     G  + D +RL QI  K+ +NA+ F+ +G  + L    D       +G  
Sbjct: 559 GFVLDSSRPAPGFVIVDARRLQQILDKLTANAVKFTHEGE-IRLATWLDTETPAGGSGRL 617

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  IP+ + +S+F  FV     H  +  G GLGL+I        GG +S+ S 
Sbjct: 618 AICVTDTGIGIPDALHESIFEPFVQADGSHTRRYGGTGLGLAIARRLAEALGGTLSVESE 677

Query: 778 DEGVTTINCRIPSK 791
            +  +     IP +
Sbjct: 678 PDQGSRFTLSIPVQ 691



 Score = 38.0 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 18/148 (12%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-LATNPSN--DELL 356
            +  Q   T  +    + AI +   +  +   N +F  +     A  L  NP      L 
Sbjct: 322 ELERQRRLTSSVFEASSDAIMLTTPSGEILSTNPAFERMTGYSGAEALGRNPRFLSSGLH 381

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-----DTWHLPNGQTLHVIVTSNPRGG 411
           +     +     +    W+  I +  +  E +      D  H   G+  H +  ++    
Sbjct: 382 DQTFYRDIWCAVITQGHWRGEIVNRRRDGELYNALLTIDAVHDEYGELQHYVGVTS---- 437

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGET 439
                 ++T +   E +     +     
Sbjct: 438 ------DITDRKRHEAELLAAKERAESA 459


>gi|115522390|ref|YP_779301.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115516337|gb|ABJ04321.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 749

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 151/367 (41%), Gaps = 20/367 (5%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +           ++   + + +    GRI  +N AF +L       L        +    
Sbjct: 100 ELEESEYRARNALESQGDLIVLRDNHGRIAFANDAFCALAGEHRAALIGARFALQVIEQG 159

Query: 488 SRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                E+DG  ++   I + D  R     +G +   +D   E+               +V
Sbjct: 160 GETI-EADGTKVYDQKIATPDGPRWISWREGLIRAGADQAAEWQ----------CVGRDV 208

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+    ERAL E  +    A+  K+ F+   S+E+R+PL  IIG + LL  ++   L+ +
Sbjct: 209 TERTETERALAEARDLACAANRAKSRFLAMASHEIRTPLNGIIGMSGLLLDTE---LSPE 265

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  YV+ +  S   L +L+ ++LD + ++AG + L+     L  L+ +  + +A +    
Sbjct: 266 QITYVKAVKTSGDALASLIEELLDYSKIEAGKIDLDAKPFALTALIEDTAELLAPRAQAR 325

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSV 723
            + I    D +L    + D  RL Q+   +  NA+ F+  G   +I++      +  F V
Sbjct: 326 QLEIATYVDERLPAHVIGDAARLRQVLLNLAGNAIKFTETGGVSLIVEPGLMPDEIRFLV 385

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I  +    +F  F     +  R   G GLGLSI E  +   GGH+++ S     
Sbjct: 386 SDTGIGIAPEAQARIFREFEQADEQTARNFGGTGLGLSISERIVKRMGGHIALRSQPGHG 445

Query: 782 TTINCRI 788
           +     I
Sbjct: 446 SIFEATI 452


>gi|108759669|ref|YP_629805.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463549|gb|ABF88734.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 706

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 117/644 (18%), Positives = 213/644 (33%), Gaps = 61/644 (9%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS------------- 254
               +G   W  ++ +  +E +        GE+     E + +                 
Sbjct: 60  LARDSGTERWVCLAARNLSEAQRDALAFQPGETSHPLAETLTQGAPRFFAAPCAPLPAVG 119

Query: 255 -----SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
                           +     G   +     V    G    A+  +++  V        
Sbjct: 120 CIAVPLGRPGAPAAGLLLLSADGPTLTPDAAWVSAHVGPRLAAMLPTEDREVAGG-ELLR 178

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLPEQ 368
            I+  +   + + D        N     L               EL      SA      
Sbjct: 179 RIIDTVADPVLLTDLEGRPHIANARAEVLLVAGPDASEGRRRATELNRQVFSSALASFAS 238

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHL-------PNGQ--TLHVIVTSNPRG-GTIWMFEN 418
            +  T +     +    E     + +       P+G+   + V+      G  T  + E+
Sbjct: 239 GDTSTVRRREVPLVDPVEGIDLLFEVVSTPVLQPDGRESLVSVMRNVTDLGRATQALGES 298

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE------- 471
                D E +  +        +D + + + +  P G + + N     L+ T         
Sbjct: 299 YRRLRDTEREARSERHRLDRVLDSVPDPLILSDPAGGMVMMNSPAEKLFATHPDSGEAAL 358

Query: 472 -----NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---------RKSLQGT 517
                N  S  + + N+     R         +  A   +   E            L G 
Sbjct: 359 RRLRSNNASFSSFLANLLDAEGRPRWRGQLGLVDPATGATLPMEAVANKVLGDSGELTGI 418

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKN 570
           + L  D         L       +         A   L E+NE LR+           K+
Sbjct: 419 VTLFHDRSEALEKARLLERVKEGSVHLEARVQAATAELAEQNEMLRRQAIQVEQASAAKS 478

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E R+PL  I+G+T++L     G LN  Q + +  I ++   LL ++N+ILD+
Sbjct: 479 QFLANMSHEFRTPLNAILGYTNMLLQGVSGELNPAQKRNLTRIDSNGRHLLEVINEILDI 538

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
             ++AG M LN S   + +LL EV   +   +  + + +      ++ +  +DRQ++ QI
Sbjct: 539 TRIEAGRMPLNLSDFGIPELLQEVMAEMDPIIARSKLTVSAHLGPRVPAVYSDRQKVKQI 598

Query: 691 FSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
              +LSNA+ F+ +GS  V  +          SV + G  I     + +F  F       
Sbjct: 599 VLNLLSNALKFTHEGSVQVQAEYVAATSTLTISVTDTGIGIDPANQEKIFEDFQQVDSSP 658

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                G GLGLSI      + GG V++ S+    +T     P +
Sbjct: 659 TRAYGGTGLGLSICRRLATMLGGRVTLQSTQGEGSTFTLHFPRR 702



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/434 (11%), Positives = 122/434 (28%), Gaps = 76/434 (17%)

Query: 64  EICDQLSKYHSLLTENN-----CLTIVWDGKDETPEIIGQLHQRID-----------IPQ 107
           ++  +L+    LL  +         + W  ++   ++   L +              + +
Sbjct: 20  DVEARLALAEHLLACDEPRLCAQHVVAWLTRERPSDVAACLARDSGTERWVCLAARNLSE 79

Query: 108 TDTDLLSFENWLKFHHYIK-LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL 166
              D L+F+     H   + L++   +      +  L A       +   G  +     L
Sbjct: 80  AQRDALAFQPGETSHPLAETLTQGAPRFFAAPCA-PLPAVGCIAVPLGRPGAPAAGLLLL 138

Query: 167 ------------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
                        + +  G    LA       +      + + + D++   V   D  G 
Sbjct: 139 SADGPTLTPDAAWVSAHVGPR--LAAMLPTEDREVAGGELLRRIIDTVADPVLLTDLEGR 196

Query: 215 ILWANISYKKNT---ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
              AN   +             ++A   +R++F   +       ++  +     +     
Sbjct: 197 PHIANARAEVLLVAGPDASEGRRRATELNRQVFSSALASFASGDTSTVRRREVPLVDPVE 256

Query: 272 GNNKSYKIVRVL-----------------NSFGEAGIAIDVS------KEITVNDQLTHT 308
           G +  +++V                       G A  A+  S       E     +    
Sbjct: 257 GIDLLFEVVSTPVLQPDGRESLVSVMRNVTDLGRATQALGESYRRLRDTEREARSERHRL 316

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK---- 364
             +L ++   + + D    +   N    +L+           S +  L  LRS N     
Sbjct: 317 DRVLDSVPDPLILSDPAGGMVMMNSPAEKLFATHPD------SGEAALRRLRSNNASFSS 370

Query: 365 ----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
               L +      W+  +  V  ++        + N     V+  S    G + +F + +
Sbjct: 371 FLANLLDAEGRPRWRGQLGLVDPATGATLPMEAVAN----KVLGDSGELTGIVTLFHDRS 426

Query: 421 VQVDLETKYNTLVK 434
             ++       + +
Sbjct: 427 EALEKARLLERVKE 440


>gi|294625322|ref|ZP_06703959.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600391|gb|EFF44491.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1134

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 139/839 (16%), Positives = 277/839 (33%), Gaps = 130/839 (15%)

Query: 60  SFLSEICDQLSKYHSLLTENNCL------TIVWDGKD---------ETPEIIGQLHQRID 104
             +S+    +     LL E+          +  DG           + P + G       
Sbjct: 163 QHVSDPRQIIDTSVRLLGEHLQANRCAFGLVAADGSTMHVISDHVQDMPSLQGDFPLEAA 222

Query: 105 IPQTDTDLLSFENWLKFHH--YIKLSKATEKLRKEGQSFDLVAET-QNDCAIKIEGRVSG 161
               D  LL    W               E+ R+ G    L     ++D  +   G    
Sbjct: 223 RGLRDA-LLENRPWFTTDALTPGAPDYVAEQYRRSGLRASLAIPLHKHDRLVAAIGVHQR 281

Query: 162 S-----CAFLRILSLDGIYS-ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           +      A + ++ L      E  +     ++L+ + +  + L ++L  +++  D  G  
Sbjct: 282 APRRWLSAEIELVRLVVARCWESMQRAKAQQQLAANEARLRRLANTLPQIIFIADPDGRP 341

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS---TLEHG 272
            + N  + + T  +    + A                  S AL+      V        G
Sbjct: 342 HYFNQRWYEYTGLDPSNNEDAAWHLAHTADGLRLSEQAWSLALKGERALEVECELLRHDG 401

Query: 273 NNKSYKIVRVLNSFGEAGIAI------DVSKEITVNDQLT----HTYEILHNLTVAIAIF 322
            ++ + +  +     E  I+       D+        QL         +   +   I + 
Sbjct: 402 QSRWHLVRALPVRGDEGSISEWIGTYTDIHDRRAFEQQLRESEVRFRALCETVPAMIWMA 461

Query: 323 DQNRYLQFHNRSFVELWE------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           D      + N  + +         +D  +      +D      R  +   + L+ +    
Sbjct: 462 DAQGDCVYWNPRWYDFTGQGEDQALDQGWWDVMHPDDA----ARVRHAFEQALDQRGEFL 517

Query: 377 NIFSVYKSSETHKDTWHL--------PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET- 427
             + V +    ++  W +         +G+ L          G I    +++ +  +E  
Sbjct: 518 AEYRVRRHDGQYR--WCIDTASPHFASDGRFL----------GHIGSLTDISERKHIEDA 565

Query: 428 ----KYNTLVKVQGETIDHLSEGVAV-FGPDGRIKL-----------------SNPAFRS 465
               +    +   G  +  + + +A+     G I L                 S P F  
Sbjct: 566 TASDRAILSLITTGAPLPAVLDAIALSVEARGEIPLYCSVMVRDEVRHTLSFGSAPHFPI 625

Query: 466 LWKTEENRLSPGTH---------------IRNIAATCS--RYYNESDGWDLFAAIITSFD 508
            ++        G                   +I A  S   ++  S    + A  +T   
Sbjct: 626 EYRGHFEPSPIGPEGPPCALSAHLGRQVICTDIQADASFSAHHAISAAMGIAACCVTPIL 685

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER------------ALT 556
                + GTL +  D       +P    Q M    +    +  ER            A T
Sbjct: 686 ASNGQVLGTLNIYYDRP----HLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAET 741

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                   A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N    + +  I  S
Sbjct: 742 AARAQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPAN--LGRGLVIIERS 799

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +     +++D+LD++ + +G ++L      +  L+    + +        I +++ +   
Sbjct: 800 ARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALTRKIALELDAPCD 859

Query: 677 -LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
               F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++ G  I  +  
Sbjct: 860 GELWFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQDTGIGIAAEFL 919

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPSK 791
             VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG        +P +
Sbjct: 920 PHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGHGALFTIVLPFQ 978



 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 86/298 (28%), Gaps = 40/298 (13%)

Query: 48  RNSLAKKVNETYSFLSEICDQLS--KYHSLLTENNCLTIVWDGKDETPEIIGQ-LHQRID 104
           R  +A+         ++     +  +   L      +  + D  D  P    Q  ++   
Sbjct: 295 RLVVARCWESMQRAKAQQQLAANEARLRRLANTLPQIIFIAD-PDGRPHYFNQRWYEYTG 353

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSC- 163
           +  ++ +               L+   + LR   Q++ L  + +    ++ E        
Sbjct: 354 LDPSNNE----------DAAWHLAHTADGLRLSEQAWSLALKGERALEVECELLRHDGQS 403

Query: 164 --AFLR----------ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
               +R          I    G Y+++ +     ++L      F+ L +++  ++W  D 
Sbjct: 404 RWHLVRALPVRGDEGSISEWIGTYTDIHDRRAFEQQLRESEVRFRALCETVPAMIWMADA 463

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI---SSSALEKNFCETVST 268
            GD ++ N  +   T                   +  + R     +     +   E    
Sbjct: 464 QGDCVYWNPRWYDFTGQGEDQALDQGWWDVMHPDDAARVRHAFEQALDQRGEFLAEYRVR 523

Query: 269 LEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
              G  +    +   +          G  G   D+S+   + D       IL  +T  
Sbjct: 524 RHDGQYRW--CIDTASPHFASDGRFLGHIGSLTDISERKHIEDATASDRAILSLITTG 579


>gi|150390625|ref|YP_001320674.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950487|gb|ABR49015.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 588

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 170/396 (42%), Gaps = 22/396 (5%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V SN   G +   F ++   +    ++ +         +  +   +       ++ L
Sbjct: 210 RVRVVSNDEMGQLGDHFNDMADHLKHTISQLSQSNTKFKALLTSIINPIVAVDNKSQVIL 269

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA   L+ T     + G HI  +         +    ++F        +E K ++ TL
Sbjct: 270 LNPAAEKLFNTTMEE-AMGKHILEVIRNN---LLDEQIKEIFEK------NEAKQIEVTL 319

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +   + +L+    P+         + +        AL E    +RK +++++ FV +VS+
Sbjct: 320 KEPKERILKVYTNPIQLEHDPTRIIGLV-------ALMEDVSEIRKLEKMRSEFVANVSH 372

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++PLT+I GF + LK+  +    +K   +++ I   +  L  L+NDIL L+ ++    
Sbjct: 373 ELKTPLTSISGFIETLKSGAIEDEETKMR-FLDIIDIETERLARLINDILTLSEIENNHS 431

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L    I  N+ L +V + +       +IR+    +  L   + ++    Q+F  ++ NA
Sbjct: 432 HLAGQGIKTNEALKDVIEMMTPIAQNKSIRLGSQVELNLPILIGNQDWFKQMFINLIDNA 491

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + ++S+G  V + A +     +FSVK+ G  IP+     +F RF        R   G GL
Sbjct: 492 LKYTSEGGRVQISAYKKYNHVVFSVKDCGVGIPKKDIPRLFERFYRVDKARTRKVGGTGL 551

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+IV+  +    G + ++S     T     +P  E
Sbjct: 552 GLAIVKHIVLSLNGRIKVNSEVGKGTEFILIVPIDE 587


>gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
 gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
          Length = 1053

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 158/379 (41%), Gaps = 19/379 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +     ++    I+     VA+    G I L N    + +    +       +
Sbjct: 147 EIAKRTKELAVSEELSRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGYTADEALGQPLL 206

Query: 481 ----RNIAATCSRYYNESDGWDLFAAIITSF-DDERKSLQGTLELLSDSVLEYSIIPLPN 535
                 +    +         D    +  +F + E  +  GTL  +    L  SI  L  
Sbjct: 207 TLLKMALPPELAAALTLPLRVDQRQLLNEAFYEAETYTRDGTLVPID---LGVSIFELNG 263

Query: 536 A-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q  +   +VT    AE+ L E      +A E+K+ F+ ++S+E+R+P+  IIG + L 
Sbjct: 264 QCQAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLA 323

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L  KQ  YV  I +S+T+LL ++NDILD + ++AG + + +    L ++L+ V
Sbjct: 324 LKTE---LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNV 380

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
                 K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G   V ++ 
Sbjct: 381 SMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQV 440

Query: 713 ARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                     +F+V + G  + E   +++F  F        R   G GLGLSI    + L
Sbjct: 441 GERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVEL 500

Query: 768 HGGHVSISSSDEGVTTINC 786
             G +S++S  +  +    
Sbjct: 501 MEGEISVTSKPDAGSCFTF 519



 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-- 353
           +KE+ V+++L+ T  I+     ++AI D    +   N++ +  +          P     
Sbjct: 152 TKELAVSEELSRT--IIEGAPSSVAIIDSQGLILLWNKTAITTYGYTADEALGQPLLTLL 209

Query: 354 --ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTS 406
              L   L +A  LP +++ +      F        ++   +  +G  + +     I   
Sbjct: 210 KMALPPELAAALTLPLRVDQRQLLNEAF--------YEAETYTRDGTLVPIDLGVSIFEL 261

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           N +        ++T +   E + N       E ++
Sbjct: 262 NGQCQAAMFLRDVTARKAAEQELNEAKAKAEEAVE 296


>gi|259415385|ref|ZP_05739306.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348615|gb|EEW60377.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 756

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/384 (23%), Positives = 162/384 (42%), Gaps = 24/384 (6%)

Query: 422 QVDLETKYNTL------VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           +  LE  Y  L       +      +H ++GV + G DG ++  N  F  L     + L 
Sbjct: 225 RQALEDAYMRLFDQKQEARRLAMIAEHANDGVMLIGRDGIVRWVNDGFSRLTGYSFDELV 284

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                RN     +    + D               R  L    +   D  +E + +P+ +
Sbjct: 285 G----RNPGDILNSDNTDPDTLRTIEEGRIKGKPFRAELINRRKDGEDIWIETNQVPVFD 340

Query: 536 AQTMLTFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               +      +         ER L E   A  +   IK  F+  +S+E R+P+  +IG 
Sbjct: 341 DTGRIETYIAVERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGM 400

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T +L+ +    L+  Q  Y + I +SS  LL+L+ND+LDL+ ++A  + L      L+  
Sbjct: 401 TQMLQAT---DLSEDQRLYADTILSSSRALLSLINDVLDLSRMNAAGVSLFNVDFDLHAC 457

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TV 708
           + +  + ++++  E  + + V  D  +  +V  D +RL QI   ++ NA+ F++ GS T+
Sbjct: 458 VRDTARLLSSQAEEKQLALGVEIDPDVPVWVTGDDRRLRQILVNLVGNAVKFTTSGSVTI 517

Query: 709 ILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
            L AA    +   S  V++ G  IP D    +F RF    +    +  G GLGLSI    
Sbjct: 518 RLSAALSGDEIALSIAVEDTGIGIPADKLDCIFERFSQADNAISRKYGGSGLGLSISRGL 577

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
               GG + ++S+    +     +
Sbjct: 578 AQAMGGDIHVTSTPGEGSCFTLTL 601



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 18/171 (10%)

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            + ++ R   S   LR  +L     E A   L  +K         ++ +  +  V    +
Sbjct: 204 LVLVQKRHRNSRRNLRSQALQRQALEDAYMRLFDQK--QEARRLAMIAEHANDGVMLIGR 261

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESR------KLFKEEIKKRMISSSALEKNFC-E 264
            G + W N  + + T   G  F + +G +            +  + +       K F  E
Sbjct: 262 DGIVRWVNDGFSRLT---GYSFDELVGRNPGDILNSDNTDPDTLRTIEEGRIKGKPFRAE 318

Query: 265 TVSTLEHGNNKSYKIVRVLNS------FGEAGIAIDVSKEITVNDQLTHTY 309
            ++  + G +   +  +V              +  DV+       QL    
Sbjct: 319 LINRRKDGEDIWIETNQVPVFDDTGRIETYIAVERDVTATKEYERQLKEAR 369


>gi|90419932|ref|ZP_01227841.1| signal transduction histidine kinase [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90335973|gb|EAS49721.1| signal transduction histidine kinase [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1040

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 129/703 (18%), Positives = 262/703 (37%), Gaps = 44/703 (6%)

Query: 125  IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
               ++   +L +  +S D       + A +  G   G     RI  L+G     +    +
Sbjct: 341  SDRAEKIIRLEERRRSKDSHLSQSEEAAFRAIGETLGDD--DRIGGLEGAIRTASRRIGE 398

Query: 185  CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
             +  +      +V  D+ D L    D  G I   + + +     +       I    ++ 
Sbjct: 399  FEDEARDAEPIEVAPDANDDLELI-DGPGAICAGDEADEAALNADSGDQPDDIVTEARVS 457

Query: 245  KEEIKKR--------------------MISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
             +                            +   E      V       +K+     V +
Sbjct: 458  DDTDVSASLPEVPRGIAPAEQPSLPDVTAQAGDNEPALAAPVEATVQPADKAAAEPAVTD 517

Query: 285  SFGEAGIAIDVSKEITVNDQLTHTYEILHNL-------TVAIAIFDQNRYLQFHNRSFVE 337
               E    +D  ++ T   +L    ++L +L        + + +  +   L + NR F +
Sbjct: 518  GADEPADPVDADEDDTDEPELPDHAQLLADLATVYGCLPLPVLVQIRET-LVYGNREFFD 576

Query: 338  LWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            L   D +  LA       L +    A    E    +   E + +      +         
Sbjct: 577  LTGYDDIPALAEAGGLARLFDGDDRAAGSGEVAIRRVTGETLAARSHMQRSTIAGRSCL- 635

Query: 397  GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV---KVQGETIDHLSEGVAVFGPD 453
               +    + +     +     +  Q D       LV   +     +   ++GV +   +
Sbjct: 636  --VMSFFASPSLSAAALRSEPEVPPQGDAAETDADLVAEVEELQAVLSAATDGVVLIDRE 693

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            G I+  N A  +L+    +  + G     + A  S+         L  A  T+  D+ + 
Sbjct: 694  GMIRSMNRAAHALFGIGADD-AAGRPFVTLLAHESQKPTLEHIETLRTASATAPRDDGRE 752

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            + G +       L  S   LP  +       +++ + R E+ L +       A   K+ F
Sbjct: 753  VIGRVAEGGFVPLSVSFGRLPEERGWCAVIRDISRAKRVEQELIKARSEAEAASLQKSQF 812

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLA 631
            + +VS+ELR+PL  IIGF D++ T   G + N +  +Y++ I  S   +L+LVND+LD++
Sbjct: 813  LANVSHELRTPLNAIIGFADVIATECFGPIGNERYLEYLDDIKRSGHHVLDLVNDLLDIS 872

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
             ++AG ++L +  + LN+++ EV   +  + +   + ++      +   VADR+ + QI 
Sbjct: 873  KIEAGKLELAFEAVSLNEVIGEVVALMQPQANREQVIVRSNLPSSVPPVVADRRSMRQIA 932

Query: 692  SKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              ++SNA+ F+  G  +I+  +    GD +   +++G  + ED  +     F      +R
Sbjct: 933  LNLVSNAVRFTPAGGQIIVSTSYSPEGDVVVRFRDSGIGMSEDEIEIAMMPFQQVNPGNR 992

Query: 749  GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +  G GLGL + ++    +    ++SS+    T +    P +
Sbjct: 993  RRGEGTGLGLPLTKALAEANRAGFAMSSTPGEGTLVEISFPPQ 1035


>gi|310829270|ref|YP_003961627.1| two-component system sensor histidine kinase [Eubacterium limosum
           KIST612]
 gi|308741004|gb|ADO38664.1| two-component system sensor histidine kinase [Eubacterium limosum
           KIST612]
          Length = 1091

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 113/528 (21%), Positives = 213/528 (40%), Gaps = 40/528 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
              I    Q     ++ + +   I  F       +   NR   E++    A      S+ 
Sbjct: 289 QASIENKRQADFLTQLYNTVPCGIIQFTTSPEHKIINANRRAWEIYGYSEAEYWQTVSDP 348

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
             +  +        Q+  +  +      Y+     K+        ++  +  SN      
Sbjct: 349 -FISMIEDERNKFRQIIDEISQNGGGVFYEREGRRKNGEQCFVSVSMERLENSNGEEVIQ 407

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDH--LSEGVAVFGP---DGRIKLSNPAFRSLWK 468
            +F ++T     ET+   + + Q + I++  L   +    P      +  +N       K
Sbjct: 408 AVFNDIT-----ETRMLQMEREQEQLIENRSLRAAICTAYPLIMSINLSQNNYECFIQEK 462

Query: 469 TEENRLSPGTHIRNIAATCSRYYN--ESDGWDLF--AAIITSFDDERKSLQGTLELLSD- 523
                   G +   +  T  R Y   + D    F   A++  +++  + L   +++L D 
Sbjct: 463 NIVRYDEKGRYDDMVDITMGRVYPSYQEDFGHRFSREALMRRYEEGERELYMEMQMLGDD 522

Query: 524 ---SVLEYSII----PLPNAQTMLTFVNVTDSVRAERA-----LTEKNEALRKADEIKNS 571
                +   +I    P  +   ++  + V D  RAE+A     L +   +   A++ K+ 
Sbjct: 523 GEYHWISLYVIRVDNPYSDDMLVIGLMKVLDEQRAEKARQERLLRDALTSAEAANKAKSE 582

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+++R+P+  IIG +  +   K G+ N +     E I +SS  LL L+NDILD++
Sbjct: 583 FLSRMSHDIRTPMNAIIGMS-TIGQLKAGAPN-RVRDCFEKIDSSSRYLLTLINDILDMS 640

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQI 690
            +++G + L       ++ +NE+   I  +  E  I   V     +  F + D  RL QI
Sbjct: 641 KIESGKIVLAKRKFDFSEFINEINTIIYPQTRERGIDFVVHHHEPMERFYIGDELRLNQI 700

Query: 691 FSKILSNAMDFSSKGSTVIL---KAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSN 745
              +LSNA+ F++ G  + +   +  R+NG      SV + G  + E+  K ++  F   
Sbjct: 701 MMNLLSNAVKFTTPGGRITVDIRELKRENGLAYLGLSVSDTGIGMSEEFMKKIYQPFEQE 760

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                R   G GLGLSIV + I L GG ++++S     TT    +P +
Sbjct: 761 NPGTARNKIGTGLGLSIVYNIIQLMGGTIAVTSEKNCGTTFELSVPLE 808


>gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 708

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 24/372 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           + E +Y  LV+ Q E        +     +GRI  +N  F  L  T    L   T    I
Sbjct: 76  ESEERYRNLVEAQIEL-------IVQRDAEGRITFANEGFARLLGTSPEALLGTTREATI 128

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTF 542
           A + +             AI  +     +           +V+E +++      + +   
Sbjct: 129 AESLAAETRPDGSRTADLAIAPAAGGPPRWF---------AVVESAVVGRDGRPEVLRAG 179

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +T+ V A R+L E       A   K+ F+  VS+E R+PL  I+G  DL+  +    L
Sbjct: 180 REITERVEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLET---PL 236

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  Y+  I  S   LL L++ ILD + ++AG + L         L+  V + +A + 
Sbjct: 237 SPEQETYIRAIKTSGEALLTLIDGILDFSKIEAGRLDLACEPFDPAALVESVVELLAPRA 296

Query: 663 HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +  + I    +D      + D  R+ QI   +  NA+ F+  G  V + A R   D + 
Sbjct: 297 QDKGLEIAADLADDLPPRVLGDGDRVRQILLNLAGNAVKFTEAGG-VGITAERVGEDLVL 355

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  IPE+    +F  F        RR  G GLGL+I    ++  GG +  +S   
Sbjct: 356 AVHDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIETTSRPG 415

Query: 780 GVTTINCRIPSK 791
             +     +P +
Sbjct: 416 AGSCFRVVLPLR 427



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 9/141 (6%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
            L+     ++ L ++   L+  RD  G I +AN  + +     G   +  +G +R+    
Sbjct: 73  HLAESEERYRNLVEAQIELIVQRDAEGRITFANEGFARLL---GTSPEALLGTTREATIA 129

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFGEAGI---AIDVSKEITV 301
           E            +     ++    G  + + +V   V+   G   +     ++++ +  
Sbjct: 130 ESLAAETRPDGS-RTADLAIAPAAGGPPRWFAVVESAVVGRDGRPEVLRAGREITERVEA 188

Query: 302 NDQLTHTYEILHNLTVAIAIF 322
              L          +VA + F
Sbjct: 189 VRSLDEARSRAEAASVAKSRF 209


>gi|163792591|ref|ZP_02186568.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159182296|gb|EDP66805.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 385

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 94/362 (25%), Positives = 157/362 (43%), Gaps = 13/362 (3%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               ++ + G+    PDGR+  +NPA  +L    +        I+ +  T +++Y E   
Sbjct: 16  RSIFENANIGLYRSTPDGRLVTANPALVALNGYADEATM----IKALQETGNQWYVEPGR 71

Query: 497 WDLFAAIITSF-------DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              F  +I           +  +        +S++           A    T  +VTD V
Sbjct: 72  RAEFHRLIAEHGRVGDFVSEVYRMHTRERIWVSENAWSVHDEAGRIAFYEGTVQDVTDRV 131

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A+R L+    A   A + K++F+  +S+ELRSPL  IIGF +++    LG  + +  +Y
Sbjct: 132 SADRQLSGARRAAEAASDAKSTFLAVMSHELRSPLNAIIGFAEIIAGRLLGPTDPRYFEY 191

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  S T LL L++DILDL+ + AG M L+   + +++L     +  A  +    + +
Sbjct: 192 AEDIRVSGTHLLELISDILDLSKIGAGKMHLDEQHVDISNLTRRTARLFAANLSTAQLEL 251

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                       AD  RL QI   +++NA+ F+  G T+ + A       +  V + G  
Sbjct: 252 VNAVPTGFPILRADPVRLGQIIVNLVANAIKFTPPGGTITVNAEDTTDAVLIKVSDTGIG 311

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +           FV +       R G GLGLSI     +LHGG ++I S     TT+   
Sbjct: 312 MTAQEVARAPEPFVQSGRPFNKSRGGTGLGLSICRDLTSLHGGTLTIDSVKGTGTTVTIH 371

Query: 788 IP 789
           +P
Sbjct: 372 LP 373



 Score = 38.0 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 49/159 (30%), Gaps = 17/159 (10%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK- 364
            +   I  N  + +     +  L   N + V L                +++ L+     
Sbjct: 13  ANYRSIFENANIGLYRSTPDGRLVTANPALVALNGY--------ADEATMIKALQETGNQ 64

Query: 365 -LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTIWMFE--- 417
              E      +   I    +  +   + + +   + + V   +   +   G I  +E   
Sbjct: 65  WYVEPGRRAEFHRLIAEHGRVGDFVSEVYRMHTRERIWVSENAWSVHDEAGRIAFYEGTV 124

Query: 418 -NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            ++T +V  + + +   +      D  S  +AV   + R
Sbjct: 125 QDVTDRVSADRQLSGARRAAEAASDAKSTFLAVMSHELR 163


>gi|150018795|ref|YP_001311049.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905260|gb|ABR36093.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 783

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 107/590 (18%), Positives = 228/590 (38%), Gaps = 61/590 (10%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT--------V 301
           +   +  A++    E +   E G      I+  +   G     +  + E+T        V
Sbjct: 177 EATFTGKAVQVKEYEHI-GYERGITYWDSIIIPVTEGGSIKYVVSNTSEVTETVLNRKKV 235

Query: 302 NDQL-------THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFLATNPSN 352
            +Q+            I  ++   + +  +   +   N    +L E   D+  L+   S 
Sbjct: 236 EEQMDAINIQNKEMEAIFESIPNGVFVRSKEGDILQQNEISRKLMEQSNDVKTLSGKYSE 295

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG- 411
            +    +     + +  +++  K       +          L NG+   + ++S+P    
Sbjct: 296 AKYFNEVGKEIDIEDMPSFRALKGERIKNQR-------ITVLANGKENILAMSSSPIYDK 348

Query: 412 ------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                 ++  F+++T  V  E K     +     ID++S+GV   G  G++ + N A   
Sbjct: 349 ENTVLMSVTAFDDITKVVSNEKKIRNNREQLKAIIDNMSDGVVAIGNCGKLVMLNKAAEK 408

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY-----YNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            +   +       + R I            Y+      L   IIT +    K     + +
Sbjct: 409 HFNIIKIIEGRNKNDREIKYFDVDMNELSEYSLPSNRILRGEIITEYRIIIKKYSENIYM 468

Query: 521 LSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEK-----------NEALRK 564
                   S  P+ +        M+   ++T+ V+ E+ +  +           NEAL K
Sbjct: 469 C------ISGNPIYDDSGNFLFGMMCMKDITEKVKQEKLIKSQHDSVLLAELERNEALEK 522

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              +K+ F+  +S+E R+PL  I      ++      L++   +Y+  I  ++   L LV
Sbjct: 523 TIAMKDEFLSIISHEFRTPLNVINSAVQAMEYICFNELSNNTKKYLGMIKLNTFRQLRLV 582

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N+ILD+ + +    K+N   I +   ++ + +++ +   +  I + + +  K      D 
Sbjct: 583 NNILDITSSNLKSTKINRKNIDIVFFIDVIVEAVRSYASKKEIGLILETSYKEFMVAIDN 642

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
           ++  +I   +LSNA+ F+S    + ++      +    V + G  I  D   ++F +F  
Sbjct: 643 EKFERILLNLLSNAIKFTSDNKKITVRFNALKENIFIEVSDEGIGISSDKIDTIFEQFGQ 702

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V ++   Q  G GLGLS+V+ F+   GG + ++S     +     +P+++
Sbjct: 703 VDSSLSRQVEGTGLGLSLVKKFVEELGGRIFVNSKVGKGSAFIVMLPNEK 752



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 121/343 (35%), Gaps = 45/343 (13%)

Query: 176 SELAETTLKCKKLSNHISV-------FKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           SE+ ET L  KK+   +          + +F+S+   V+ R + GDIL  N   +K  E 
Sbjct: 223 SEVTETVLNRKKVEEQMDAINIQNKEMEAIFESIPNGVFVRSKEGDILQQNEISRKLMEQ 282

Query: 229 EGI--------VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY--- 277
                         K   E  K    E       +   E+   + ++ L +G        
Sbjct: 283 SNDVKTLSGKYSEAKYFNEVGKEIDIEDMPS-FRALKGERIKNQRITVLANGKENILAMS 341

Query: 278 --KIVRVLNSFGEAGIAID-----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
              I    N+   +  A D     VS E  + +       I+ N++  +        L  
Sbjct: 342 SSPIYDKENTVLMSVTAFDDITKVVSNEKKIRNNREQLKAIIDNMSDGVVAIGNCGKLVM 401

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ--LNWKTWKENIFSVYK--SSE 386
            N++  + + I       N ++ E+  F    N+L E    + +  +  I + Y+    +
Sbjct: 402 LNKAAEKHFNIIKIIEGRNKNDREIKYFDVDMNELSEYSLPSNRILRGEIITEYRIIIKK 461

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN-----------TLVKV 435
             ++ +   +G  +    + N   G + M +++T +V  E                  + 
Sbjct: 462 YSENIYMCISGNPI-YDDSGNFLFGMMCM-KDITEKVKQEKLIKSQHDSVLLAELERNEA 519

Query: 436 QGETIDHLSEGVAVFGPDGR--IKLSNPAFRSLWKTEENRLSP 476
             +TI    E +++   + R  + + N A +++     N LS 
Sbjct: 520 LEKTIAMKDEFLSIISHEFRTPLNVINSAVQAMEYICFNELSN 562


>gi|319781457|ref|YP_004140933.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167345|gb|ADV10883.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 763

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 165/410 (40%), Gaps = 27/410 (6%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETK--------YNTLVKVQGETIDHLSEGVA 448
           G  +H+    +    T  + +  T +   E +             +     ID L + V 
Sbjct: 81  GLAMHLRARRS-EHRTAALLDETTARSRAEIETLADRMWEMQESDERFRGLIDALGDLVI 139

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
               DG I  +N  F  L + ++  L+     + +A          D        ++S D
Sbjct: 140 HRDRDGYIVYANKVFADLVEIDQRDLAG----KTLAELGIEVGMVPDAAFSDHECLSSTD 195

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKAD 566
               +  G       S +E S+    +          ++T   RAE +L    E    A 
Sbjct: 196 VSISTPSGQRWF---SWIELSVRDKDSGAVSHRAIARDITARKRAESSLITARERAEYAS 252

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K+ F+  VS+E+R+P+  I+G   LL  +   SL+ +Q  YV  +S S++ LL L+ D
Sbjct: 253 QAKSRFLATVSHEIRTPMNGIMGMARLLADT---SLSPEQQTYVGAVSTSASALLALIED 309

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           +LD + ++AG        + + ++ + + + +A +    +I +    +  +   + AD  
Sbjct: 310 LLDYSKIEAGRFDPEPQPMSVREIADNIIELLAARAFAKDIGLGCHVEPDVPQLITADPG 369

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           ++ Q+   ++ NA+ F+  G  ++  A      +    F++ + G  + +   + +F  F
Sbjct: 370 KVRQVLLNLIGNAIKFTDSGGVLVSIARARTETSDRICFTIADTGPGLHDADLERIFEEF 429

Query: 743 VSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                       G GLGL+I    +   GG +S+SS     +     +P+
Sbjct: 430 EQADGTSTRTHGGAGLGLAISRRLVAAMGGTISVSSRLGQGSEFVFEVPA 479



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 78/241 (32%), Gaps = 11/241 (4%)

Query: 89  KDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148
              T   +       +   +  + LSF  ++       L+  T        +        
Sbjct: 22  PASTRRFVAAPPLVPEPEFSRREGLSFLTFVAIVVMAGLAHLTGAPMFISVALLATGLAG 81

Query: 149 NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
               ++       + A L   +     +E+     +  ++      F+ L D+L  LV H
Sbjct: 82  LAMHLRARRSEHRTAALL-DETTARSRAEIETLADRMWEMQESDERFRGLIDALGDLVIH 140

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET-VS 267
           RD+ G I++AN  +    E +    +   G++      E+     ++ +  +    T VS
Sbjct: 141 RDRDGYIVYANKVFADLVEID---QRDLAGKTLAELGIEVGMVPDAAFSDHECLSSTDVS 197

Query: 268 TLEHGNNKSYKIVRVLNSFGEAG------IAIDVSKEITVNDQLTHTYEILHNLTVAIAI 321
                  + +  + +     ++G      IA D++        L    E     + A + 
Sbjct: 198 ISTPSGQRWFSWIELSVRDKDSGAVSHRAIARDITARKRAESSLITARERAEYASQAKSR 257

Query: 322 F 322
           F
Sbjct: 258 F 258



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 19/173 (10%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
            +++  ++    +   A I     +   + +       ++  L   +   D++ Y+ + N
Sbjct: 92  EHRTAALLDETTARSRAEIETLADRMWEMQESDERFRGLIDALGDLVIHRDRDGYIVYAN 151

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           + F +L EID   LA       L E       +P         +  FS ++   +   + 
Sbjct: 152 KVFADLVEIDQRDLAGK----TLAELGIEVGMVP---------DAAFSDHECLSSTDVSI 198

Query: 393 HLPNGQ----TLHVIVTSNPRGGTI--WMFENLTVQVDLETKYNTLVKVQGET 439
             P+GQ     + + V     G      +  ++T +   E+   T  +     
Sbjct: 199 STPSGQRWFSWIELSVRDKDSGAVSHRAIARDITARKRAESSLITARERAEYA 251


>gi|294495496|ref|YP_003541989.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666495|gb|ADE36344.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 575

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 132/289 (45%), Gaps = 6/289 (2%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            ITS        Q T  +++   + +    +             +  +    L   N+ L
Sbjct: 285 FITSIVRSIYLKQATFMIITTFFILFFTSLISLIFFSWNRKLEEEVDKKTEQLENSNQRL 344

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K + +KN F+  VS+EL++PLT I   ++ L+          Q + ++ I  +      
Sbjct: 345 QKLNRVKNEFLSMVSHELKTPLTAIRTSSEFLREEDYD--RETQEEMLDLIIRNIDRQSR 402

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +V+D+LD++ +++G M      + L ++++ V Q +     ++ I I+   D       A
Sbjct: 403 MVDDLLDISRIESGRMVFKEEKVDLKEIIDNVIQMMEPMATKHGIAIERELDND-PRVKA 461

Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D+ +LL++F  +L+NA+ F+  +G ++ +K          SV + G  IPE+  + +F +
Sbjct: 462 DKDKLLRVFVNLLNNAIKFTADRGESIKIKTEETGDFVEISVIDKGIGIPENEQEKIFEK 521

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F       +R   G GLGL+I++  I  HGG + + S     +T    +
Sbjct: 522 FYQVDSTSRRKVGGSGLGLAIIKGIIEGHGGSIRVKSEPGVGSTFVFTL 570


>gi|264678130|ref|YP_003278037.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
 gi|262208643|gb|ACY32741.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
          Length = 841

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 214/525 (40%), Gaps = 25/525 (4%)

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           Y + +       A   +D ++      +      ++ ++   I   D++  L F N    
Sbjct: 321 YSVHKTRKLQSAAHREMDRAQAKLARSE-QELAVLMRSVQELIFRTDKDGRLTFVNAR-- 377

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK-SSETHKDTWHLP 395
                    L   PS   L   L    K+ E       K  + +  + S  T +  + LP
Sbjct: 378 ------WEMLTGQPSKQALGLRLE---KIVEPQFRPQVKVLLDAKSRQSLRTCQAQFALP 428

Query: 396 NGQTL--HVIVTSNPRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           N + +   + V    + G I  F     ++T +   + +  T +  Q    +     + V
Sbjct: 429 NEREILCDIAVVPLTKHGEIIGFAGSAVDVTARWKAQQELQTQLAFQHLLFESTPLPLLV 488

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFD 508
                RI ++N A+     +   ++  G+++++I A+        ++   L +   T  D
Sbjct: 489 TDEAHRITIANKAWEEFSGSNSLQV-MGSNLQDICASEDATKQLRTNDIVLASGQRTVLD 547

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +     GT   +  +      +       +  FV+VT+   AE A  E  +A  +A  +
Sbjct: 548 TKVIHADGTYRDMQITKTAIKDVRGRPTGVLSIFVDVTEFRIAELATREARDAAEEAFRV 607

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ FV ++S+ELR+PL +IIGF++L           K  +    I A+   +L LVND+L
Sbjct: 608 KSEFVANMSHELRTPLQSIIGFSEL--GQLRSRATPKLGEMFYDIHAAGQRMLALVNDLL 665

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+A +++ +  ++   + L  L+  V + +   +H+  I +++  +       AD  R  
Sbjct: 666 DVAKLESPVGSIHTEKVDLRGLIRPVARELEPLLHQKQIDLRLRLEDAPLIAKADPVRFQ 725

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           Q+   +L+NA+ FS     + ++   D  G+      + G  +P      +F  FV ++ 
Sbjct: 726 QVIRNMLANAIKFSLPHGRIDVEGHFDGQGNICVDFLDQGPGVPTQELDKIFQPFVQSSK 785

Query: 748 RGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 G GLGL+I    I+   G ++ ++  +G       +P++
Sbjct: 786 TKDGSGGTGLGLAICRKIIDAMDGTITAANRPDGGAVFRITLPTR 830



 Score = 57.6 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 92/285 (32%), Gaps = 26/285 (9%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT----- 226
              + E+     K  +    ++V      S+  L++  D+ G + + N  ++  T     
Sbjct: 331 SAAHREMDRAQAKLARSEQELAVL---MRSVQELIFRTDKDGRLTFVNARWEMLTGQPSK 387

Query: 227 ETEGIVFQKAIGESRK-----LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           +  G+  +K +    +     L   + ++ + +  A      E     +        + +
Sbjct: 388 QALGLRLEKIVEPQFRPQVKVLLDAKSRQSLRTCQAQFALPNEREILCDIA---VVPLTK 444

Query: 282 VLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                G AG A+DV+     +  +  QL   + +  +  + + + D+   +   N+++ E
Sbjct: 445 HGEIIGFAGSAVDVTARWKAQQELQTQLAFQHLLFESTPLPLLVTDEAHRITIANKAWEE 504

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS--VYKSSETHKDTWHLP 395
               +   +  +   D       +       +   + +  +    V  +  T++D   + 
Sbjct: 505 FSGSNSLQVMGSNLQDICASEDATKQLRTNDIVLASGQRTVLDTKVIHADGTYRDM-QIT 563

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
                 V        G + +F ++T     E           E  
Sbjct: 564 KTAIKDVRGRPT---GVLSIFVDVTEFRIAELATREARDAAEEAF 605



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 101/310 (32%), Gaps = 29/310 (9%)

Query: 26  VFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYH---SLLTENNCL 82
           +F      LL  +I +   + +   L       +  +     +L++     ++L  +   
Sbjct: 304 IFFVAGLALLFLVIGLGYSVHKTRKLQS---AAHREMDRAQAKLARSEQELAVLMRSVQE 360

Query: 83  TIVWDGKDETPEII-GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK-----LRK 136
            I    KD     +  +       P      L  E  ++     ++    +      LR 
Sbjct: 361 LIFRTDKDGRLTFVNARWEMLTGQPSKQALGLRLEKIVEPQFRPQVKVLLDAKSRQSLRT 420

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
               F L     N+  I  +  V        I+   G   ++       ++L   ++   
Sbjct: 421 CQAQFAL----PNEREILCDIAVVPLTKHGEIIGFAGSAVDVTARWKAQQELQTQLAFQH 476

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR---KLFKEEIKKRMI 253
           +LF+S    +   D+A  I  AN ++++ + +  +    +  +     +   ++++   I
Sbjct: 477 LLFESTPLPLLVTDEAHRITIANKAWEEFSGSNSLQVMGSNLQDICASEDATKQLRTNDI 536

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVSK----EITVND 303
             ++ ++   +T      G  +  +I +           G   I +DV++    E+   +
Sbjct: 537 VLASGQRTVLDTKVIHADGTYRDMQITKTAIKDVRGRPTGVLSIFVDVTEFRIAELATRE 596

Query: 304 QLTHTYEILH 313
                 E   
Sbjct: 597 ARDAAEEAFR 606


>gi|94500179|ref|ZP_01306713.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
 gi|94427752|gb|EAT12728.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
          Length = 908

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 7/242 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +AE    +   A       KN F+  +S+E+R+PL  I+G +DLLK +   ++N  QS+
Sbjct: 415 NQAENESQQIRIAAEAESRAKNEFLAMMSHEIRTPLNGIMGMSDLLKNT---NMNETQSR 471

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV  I  S   LL ++NDILD + + AG +++    I L DLL++     A  + + +I 
Sbjct: 472 YVNTIYHSGESLLGIINDILDFSKILAGKLEIESVPIHLLDLLDQCAGIFAKDIEKKDID 531

Query: 669 IKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           + +     K     +D  RL Q+    LSNA+ F+ KGS V L  + +       VK+ G
Sbjct: 532 VTLELVPAKDIVIESDPVRLRQVILNYLSNAIKFTQKGS-VQLILSVEGNTLNLKVKDTG 590

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP     S+F  F        R   G GLGL+I +    L GG VS+ S++   +   
Sbjct: 591 IGIPPCKQASLFEAFAQADTSTTRQYGGTGLGLAICKKIAELMGGGVSVESNENEGSVFE 650

Query: 786 CR 787
             
Sbjct: 651 FY 652


>gi|52550550|gb|AAU84399.1| two-component hybrid sensor and regulator [uncultured archaeon
           GZfos9E5]
          Length = 424

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 137/309 (44%), Gaps = 20/309 (6%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           ++T F  E  ++Q   E   D + +  +       T+   +      RAE       E L
Sbjct: 106 MVTGFGSEEIAVQSIHEGAIDYIPKDHLTKDRLLSTIKITLETWKRKRAEEEKRRLMEEL 165

Query: 563 RKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              +                  +K  F+   S+ELR+PLT +     +L+   +G L+ K
Sbjct: 166 ETKNAELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKLDKK 225

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q + +E +  + T L NL+ DILDL+ ++AG +KL++ ++ LND + E  +         
Sbjct: 226 QEKSIEVVLRNLTRLENLIGDILDLSRIEAGRIKLSFDSMNLNDAVKEAIKMQEAFAKGK 285

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI I      ++ + + D +RL Q    +L+NA+ FS K   VI++  R   +  FS+ +
Sbjct: 286 NIEISAKL-AEMPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIETKRLGKNVQFSITD 344

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +   K +F  F        R   G GLGL+I +  I  H G +   S     +T
Sbjct: 345 YGIGISKADQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKGST 404

Query: 784 INCRIPSKE 792
               IP+K+
Sbjct: 405 FYFVIPTKQ 413


>gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
 gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
          Length = 589

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 153/369 (41%), Gaps = 26/369 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L  ++    +     I+++  G+ +    G I L N     +++             + 
Sbjct: 233 QLTKRHQVQKERLETLIENMGSGLILINTRGDISLINKTCHDIFQ------------EDT 280

Query: 484 AATCSRYYNESDGWDLFAAIITS--FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                + Y++         I+      ++R+  Q  L +     LEY    +  A  +  
Sbjct: 281 DLWLHQLYHDVIKHKEIIKIVQDIFLTEKRQRRQVKLPIH----LEYRHFDVHGAPIVRE 336

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              +         +      L+K ++++  FV +VS+EL++P+T+I GFT+ L    +  
Sbjct: 337 NGKLKGI----ALVFHDITELKKLEQVRKDFVANVSHELKTPVTSIKGFTETLLDGAMHD 392

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               + Q++  I   S  L +L++D+L+L+ ++    +LN+    L  +++EV   +  K
Sbjct: 393 -EQLRDQFLHIIWKESERLQSLIHDLLELSKIEQNYFQLNWQQTNLFAVVSEVMTLLKGK 451

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I I + ++G       D +RL QI   +++NA+ ++S G  + L          F
Sbjct: 452 AEEKGIDISLSAEGSFD-LEGDPERLKQIAINLVNNAITYTSNGGRIDLALKDHGDVVEF 510

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I E     +F RF        R   G GLGL+IV+  +  H G + + S   
Sbjct: 511 EVNDTGIGIRESEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLVEAHQGKILVESEFG 570

Query: 780 GVTTINCRI 788
             TT   + 
Sbjct: 571 KGTTFTIQF 579


>gi|320167537|gb|EFW44436.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864]
          Length = 1482

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 13/250 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R   A   +    ++A+E K+ F+ ++S+E+R+PL  I+G T ++ T+   SLN +QS
Sbjct: 608 DQRRVNAAESEALKEKQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTT---SLNDEQS 664

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  I  S+ ILL ++NDILD + ++AG + ++        +   +   +       N+
Sbjct: 665 DYLGTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAATKNL 724

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720
            +    D KL    V D  R  QI   ++SN + F++ GS V L+   D           
Sbjct: 725 LLSCYIDPKLPRVFVGDPNRFQQILVNLVSNGIKFTTTGS-VSLRCLLDEDVDDQNMVVR 783

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F + + G  I  +    +F RF            G GLGL I +S +NL GG + + S+ 
Sbjct: 784 FEIIDTGIGIEAEALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVNLMGGTIGVDSTL 843

Query: 779 EGVTTINCRI 788
              +     I
Sbjct: 844 GQGSRFWFTI 853


>gi|34496645|ref|NP_900860.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
           12472]
 gi|34330304|gb|AAQ58865.2| probable sensor/response regulator hybrid [Chromobacterium
           violaceum ATCC 12472]
          Length = 1105

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/575 (17%), Positives = 212/575 (36%), Gaps = 34/575 (5%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNN-KSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
           +  ++  + +  +       ++ +      + ++ +R +N+  E+ +         V   
Sbjct: 55  DTARRDTLLAMCVGGLLVAALAWIHQRQRNRLHERIRQMNASLESQV---RQGTQEVRRY 111

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 IL++ + AI   DQ   +   N +   L       +       + L+      +
Sbjct: 112 AALQRAILNDASYAIVATDQTGLVTLFNPAAETLLAERADEVVGRRRLTDWLDASELERR 171

Query: 365 LPEQLN-----WKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSN----PRG--- 410
             ++        K   E + S  +  +  +  W L   +G+ + V +         G   
Sbjct: 172 SLQRAEDSHLPPKEAFETLVSRTRDGQASQQEWTLTASDGRRIPVSIAMTALRGDDGELQ 231

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G + M  +++ Q   + +  +         D    G+ ++         N     +++  
Sbjct: 232 GFLAMAADISAQQQYQRELMSARDQLATAADVAELGIWIWQLADNALEWNARMFDIYQLP 291

Query: 471 ENRLSPG---THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-QGTLELLSDSVL 526
           E     G    H R+          E    D  A         R  L  G +  +  + L
Sbjct: 292 EALGKEGLNYRHWRDRVHPDDADEVERLLNDAVAGRGVYAPTFRIVLPDGRIRHIQAAAL 351

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                     +      ++T     E AL E  E    A   K +F+ ++S+E+R+P+  
Sbjct: 352 VEFDDDNRPYRVTGINRDITIQHDIETALRESKENAEAASRAKANFLSNMSHEIRTPMNA 411

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   LL+      L ++    V  I  +   L  ++NDILD + ++AG +++  ++  
Sbjct: 412 VLGLAYLLEKH---GLPAEALDLVHKIRVAGRSLQAIINDILDFSKIEAGNLEIEQASFR 468

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L D+L+ +   ++  +   +I + +      +     D  RL Q+   + SNA+ F+  G
Sbjct: 469 LADVLDNLSTIMSASVGNRDIELIIAPPPQDIDYLRGDALRLEQVLINLTSNAIKFTEHG 528

Query: 706 STVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
              +    L+A+       F+V++ G  IP+   + +F  F        RR  G GLGL+
Sbjct: 529 HVKVSIQPLEASPSQVRLRFAVEDTGIGIPKPKQRELFRPFTQADASTTRRFGGTGLGLA 588

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI--PSKE 792
           I +  + L GG + + S     +     +  P ++
Sbjct: 589 ISQRLVALMGGEIGLYSEPGQGSAFWFTLRFPREQ 623


>gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
 gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
          Length = 877

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 165/392 (42%), Gaps = 24/392 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + L              +     +DH   G+      GR+  SN     L+ T   RL
Sbjct: 370 LLKQLEEGRRTRAVLEESRERYRRLVDHAPLGIVRLEGGGRVVDSNAKLLELFDTTGERL 429

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSII 531
           +     R+I +   R   E          +      R+    +      +    L+  ++
Sbjct: 430 AD----RDIFSRPGRLLPE------VLEAVRQCQQTRRPRVLSFAFPKGTGCKHLKAHLV 479

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPL 584
           PL   + +    +VTD V AE+AL ++ E        L +   +K+ F+ H+S+ELR+PL
Sbjct: 480 PLGPEELLGVVEDVTDLVEAEKALWKRTEELSAASADLTRTARMKDEFLAHMSHELRTPL 539

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++   + L    LG+LN  Q + ++ I       L+L+ DILDL+ V+AG + L  S 
Sbjct: 540 GAMLNLAEALAEESLGTLNEAQRRILQSIEECGRHFLSLIGDILDLSKVEAGRLDLVRSP 599

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + +  L      +++    +  I + + +   L     D +R+ QI   +LSNA+ F+ +
Sbjct: 600 LDVASLARGALTALSRDFEKKGIAVSLEAPEDLPRADGDPKRVRQILVNLLSNAVKFTPQ 659

Query: 705 GSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
           G  V ++  RD        +V + G  I  +    +F  FV           G GLGLS+
Sbjct: 660 GGRVGVEVLRDPLRPAVAVTVWDRGIGISPEDLDRLFVPFVQGEGGLSRSFSGTGLGLSL 719

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V   + LHGG + + S+    +    R+P  E
Sbjct: 720 VLRMVELHGGGLQVESAPGEGSRFTVRLPLAE 751



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 15/135 (11%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
              + +       ++ +  + I   +    +   N   +EL++     LA          
Sbjct: 381 RAVLEESRERYRRLVDHAPLGIVRLEGGGRVVDSNAKLLELFDTTGERLADRDI------ 434

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVIVTSNPRG--GTIW 414
           F R    LPE L      E +    ++      ++  P G    H+     P G    + 
Sbjct: 435 FSRPGRLLPEVL------EAVRQCQQTRRPRVLSFAFPKGTGCKHLKAHLVPLGPEELLG 488

Query: 415 MFENLTVQVDLETKY 429
           + E++T  V+ E   
Sbjct: 489 VVEDVTDLVEAEKAL 503


>gi|192361265|ref|YP_001984106.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
            domain-containing protein protein [Cellvibrio japonicus
            Ueda107]
 gi|190687430|gb|ACE85108.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein protein [Cellvibrio japonicus Ueda107]
          Length = 1260

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 204/513 (39%), Gaps = 42/513 (8%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            S +  +  +      +L N+   I + D   +    NR+F +L       +     ++ +
Sbjct: 541  SSQEVLRRREQELRSLLDNIPDPIWLKDIEGHYLNCNRAFAQLLGKTEQEIVGKREHELV 600

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQ-----TLHVIVTSNPR 409
               +    +          + +  ++  +     + W +  +G+     TL V V     
Sbjct: 601  SADIAQVFR----------RNDRVALGSAGPHRHEQWLVAADGRLHMLDTLKVAVRDADN 650

Query: 410  G--GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
               G + +  ++T + +L     + ++      +  ++G  +    G     NP+ R + 
Sbjct: 651  QTYGILGIGRDITDKHEL----ISELEKFKRFAEFSAQGFGIASLKGETLYMNPSMRRM- 705

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SD 523
               +   +     +                D+F  ++     E+   QG L  L    SD
Sbjct: 706  -LSDRSTNEDDFKQQFWLYYPPELQVRVRDDIFPKVV-----EQGHWQGELAALHADGSD 759

Query: 524  SVLEYSIIPLPNAQTM-----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               + +   + + Q           +++     E  L++  EA  +A   K+ F+ ++S+
Sbjct: 760  FPTQETFFVIRDDQGKPQYIGNVMTDISAQKETEAELSQAKEAAEEAARAKSRFLANMSH 819

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            E+R+PL  ++G+T LL      + N  Q + ++ I  +S  LL L+ND+LDL+ +++G +
Sbjct: 820  EIRTPLNAVLGYTQLLMRDPQLAGN--QRERLQLILNASQRLLGLINDVLDLSKIESGAL 877

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
             L      L+  + E+   IA + +   + + +  D    + V  DRQ+L QI   +L N
Sbjct: 878  NLRQDYFDLHQEMQEIHAIIAERANAKGLSLGLEIDFPAPNIVRGDRQKLGQILLNLLGN 937

Query: 698  AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
            A+ F+ +GS V L   R      F + + G  I     + +F+ F          G GLG
Sbjct: 938  AVKFTHQGS-VNLMLTRHGDWVDFVISDTGPGIAPQELEQLFSAFRQGQAGQDSGGTGLG 996

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            L++        GG + ++S     T  + R+P 
Sbjct: 997  LTLSRHLAQGMGGSLELTSQLGEGTRAHLRLPL 1029



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 85/285 (29%), Gaps = 33/285 (11%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  ++       +     + L       + L D++   +W +D  G  L  N ++ +   
Sbjct: 526 LKEVEQRQQTQEQLESSQEVLRRREQELRSLLDNIPDPIWLKDIEGHYLNCNRAFAQLL- 584

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISS------SALEKNFCETVSTLEHGNNKSYKIVR 281
             G   Q+ +G+           ++          +   +  E       G       ++
Sbjct: 585 --GKTEQEIVGKREHELVSADIAQVFRRNDRVALGSAGPHRHEQWLVAADGRLHMLDTLK 642

Query: 282 VL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
           V        ++G  GI  D++ +  +  +L               I        + N S 
Sbjct: 643 VAVRDADNQTYGILGIGRDITDKHELISELEKFKRFAEFSAQGFGIASLKGETLYMNPSM 702

Query: 336 VELW--------EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
             +         +    F    P   ++       +  P+ +    W+  + ++      
Sbjct: 703 RRMLSDRSTNEDDFKQQFWLYYPPELQVRVR---DDIFPKVVEQGHWQGELAAL------ 753

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNT 431
           H D    P  +T  VI     +   I  +  +++ Q + E + + 
Sbjct: 754 HADGSDFPTQETFFVIRDDQGKPQYIGNVMTDISAQKETEAELSQ 798


>gi|170757669|ref|YP_001779992.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169122881|gb|ACA46717.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 617

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 177/389 (45%), Gaps = 25/389 (6%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L     N    
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESAAELLICNNNGKLE 258

Query: 477 GTHIRN---------IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +I N         I       Y           +I   +++RK +   +E +S  ++ 
Sbjct: 259 NLNINNFILKEEQKKIRNKLELVYRNKSDIVCVEQVIQ--NNKRKKIN--VESISTYIIY 314

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +   + +    +T     + ++   E+ +   NE+ R+ +++   F+ ++S+EL++PL 
Sbjct: 315 NNRPAILSILRDITSQKQVEKLQKDVEKNIELLNES-REYNKLITDFLANISHELKTPLN 373

Query: 586 NIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I     +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN   
Sbjct: 374 VIFTAVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVN 433

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + +L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  
Sbjct: 434 CNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGS 493

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  + +       + I SVK+ G  IPED  +++F+RFV      R  + G G+GL +V+
Sbjct: 494 GGNIYVTVKDFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVK 553

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SF+N+H G + I S     +     IP K
Sbjct: 554 SFVNMHEGTIDIQSEIGKGSEFIINIPVK 582


>gi|153939551|ref|YP_001389707.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|152935447|gb|ABS40945.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
          Length = 617

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 177/389 (45%), Gaps = 25/389 (6%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L     N    
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESAAELLICNNNGKLE 258

Query: 477 GTHIRN---------IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +I N         I       Y           +I   +++RK +   +E +S  ++ 
Sbjct: 259 NLNINNFILKEEQKKIRNKLELVYRNKSDIVCVEQVIQ--NNKRKKIN--VESISTYIIY 314

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +   + +    +T     + ++   E+ +   NE+ R+ +++   F+ ++S+EL++PL 
Sbjct: 315 NNRPAILSILRDITSQKQVEKLQKDVEKNIELLNES-REYNKLITDFLANISHELKTPLN 373

Query: 586 NIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I     +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN   
Sbjct: 374 VIFTAVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVN 433

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + +L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  
Sbjct: 434 CNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGS 493

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  + +       + I SVK+ G  IPED  +++F+RFV      R  + G G+GL +V+
Sbjct: 494 GGNIYVTVKDFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVK 553

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SF+N+H G + I S     +     IP K
Sbjct: 554 SFVNMHEGTIDIQSEIGKGSEFIINIPVK 582


>gi|238855834|ref|ZP_04646123.1| sensor protein YycG [Lactobacillus jensenii 269-3]
 gi|282933324|ref|ZP_06338707.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|238831497|gb|EEQ23845.1| sensor protein YycG [Lactobacillus jensenii 269-3]
 gi|281302509|gb|EFA94728.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
          Length = 621

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 156/404 (38%), Gaps = 34/404 (8%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKL 458
            V + SN   G +   F  L+++V+   + +   + +    + H+++GV      G + +
Sbjct: 228 QVKIYSNDELGQLAEAFNTLSIRVERSQEQSESERRRLDSVLSHMTDGVIATDRHGNVII 287

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N    S    +E   +    I  I         +    +    +IT  +          
Sbjct: 288 LNQMALSFLDIKEKE-AVNKPITKILGLADDVSAQELIGNQQEMMITVNEG--------- 337

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               + +L  S   +      ++          E+          K +  +  FV +VS+
Sbjct: 338 -TPDEMILHASFSLIRRVTGFVSGAVCVLHDVTEQQ---------KNENEQRQFVSNVSH 387

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT++  + + L             Q++E     +  ++ ++ND+L L+ +D G+ 
Sbjct: 388 ELRTPLTSLRAYIEALNDGAWKD-PEIAPQFLEVTQEETERMIRMINDLLSLSRMDRGVA 446

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMH---------ENNIRIKVISDGKLGSFVADRQRLLQ 689
           K++   +  ND L+ V       +          E    IK     +      D  +++Q
Sbjct: 447 KMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYSIKRKITNQDLWVEIDTDQMMQ 506

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--H 747
           +   I++NA+ +S  G  + +  ++     I S+ + G  IP+     +F+RF       
Sbjct: 507 VIDNIMNNAIKYSPDGGVITVGLSQSQNQIILSISDQGLGIPKKDLNKIFDRFYRVDKAR 566

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             ++ G GLGL+I +  +  H G +   S +   +T    +P +
Sbjct: 567 SREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFYISLPFE 610


>gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1002

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 146/296 (49%), Gaps = 17/296 (5%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADE 567
           R S     E+++   L +  + +  AQ +        +  S +++  L EK      A+ 
Sbjct: 469 RHSFALWKEVVNGKSLAWESLEIEAAQELKNTLLLAALEFSKQSQVILEEKTRQANAANL 528

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+ELR+PL  I+GFT ++  ++  SL+S+Q +Y+  I+ S   LL+L+ND+
Sbjct: 529 AKSQFLAKMSHELRTPLNAILGFTQMM--NRDSSLSSQQQEYLGIINRSGEHLLSLINDV 586

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           L+++ ++AG + LN +   L++L+  VK+ +  K     + + V  D +L  ++  D  +
Sbjct: 587 LEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLELTVHQDEELPKYIEGDESK 646

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           L QI   ++ NA+ F+  G   + L                 VK+ G  I +D  +++F 
Sbjct: 647 LRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQLEVKDTGIGINQDELETIFE 706

Query: 741 RFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI----PSK 791
            F    +    + G GLGLSI   F  L GG +++ S     +T  C I    P+K
Sbjct: 707 AFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLGQGSTFTCTIKMIMPTK 762


>gi|154251392|ref|YP_001412216.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155342|gb|ABS62559.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 617

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 155/378 (41%), Gaps = 8/378 (2%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLS 475
             + V+ + E       +            +++  P   R+  +N A  +L+  +E    
Sbjct: 230 REVEVRQEAEQAVRATEESFQSIFYAAPLPISLVDPSTFRVMQANMAALALFGIDETEAD 289

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                            +       A     F  +R+       L+S +V+ +       
Sbjct: 290 GFDVREFFDEEDLPARLDRLVLGGRAGAPVEFCLKRRDGAVIWALVSAAVVSFH----GR 345

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              ++   +VT   +   AL E  +    A   K+ F+ ++S+ELR+PL  IIGF++ L+
Sbjct: 346 RALLIGIQDVTVRHKEAEALREARDQATAASRSKSEFLANMSHELRTPLNAIIGFSEALE 405

Query: 596 TSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               G + N +  +Y E I  S   LL+L+NDILDL+ ++AG  KL+     L+ ++   
Sbjct: 406 RELFGPVGNPRYREYAEDIHDSGVHLLSLINDILDLSKIEAGHFKLHEDETDLDHIVAAA 465

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + +  +  + NI I+        + + D + L Q+   ++SNA+ FS  GS ++++A  
Sbjct: 466 TRIVRHRAQQANIAIECRLPQPPLAVLVDERALKQVLINLVSNAVKFSPDGSLILVEANV 525

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
                  SV + G  I  +        F            G GLGL + +    LH G +
Sbjct: 526 TTQGLRISVADKGVGIAPEDIPRALTPFTQLDGSLSRAHEGTGLGLPLAKHLTELHDGKL 585

Query: 773 SISSSDEGVTTINCRIPS 790
            I S+ +  TT+   +P 
Sbjct: 586 FIESAVDVGTTVYVDLPL 603


>gi|312144338|ref|YP_003995784.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904989|gb|ADQ15430.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 592

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 173/396 (43%), Gaps = 29/396 (7%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRI 456
           Q + +   ++       MF ++  +++ +    +  K + E I   + +GV     +GR+
Sbjct: 217 QRISIRKYNSEIEKLAMMFNHMAAELEDKIAEISKEKNRIEAILKSMVDGVIATDSEGRV 276

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L NPA + ++  +E  +     I ++       Y            +    DE++S+  
Sbjct: 277 SLINPAAQKIFNIDEQAIKGKNLISSLFNHRLDMY------------LQRSLDEKESISR 324

Query: 517 TL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            +  +     +++ + IPL      +    +  +   E         LRK + ++N FV 
Sbjct: 325 EIIYQNPDKKIIQTTFIPLLGDNKDINGGVIVLTDITE---------LRKLETVRNDFVA 375

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+ELR+PLT+I+G+ D L  S +    +K+  +++ I   +  L  L+ D+L+L+ ++
Sbjct: 376 NVSHELRTPLTSILGYLDTLLESDIEDQKTKEK-FLKIIKEETNRLSLLITDLLNLSKIE 434

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +   +L            +V   +       +I I +  +  L      R+++ Q+   +
Sbjct: 435 SQSFELYPGDF--LKTFQKVYHLLEKNAQLKDININLEIEDDLPQVYMVREQVEQVLINL 492

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           + NA+ +SS G T+ +   + +    F +++NG  IP D  + +F RF        R   
Sbjct: 493 IDNAIKYSSSGGTINISVQKKSDKLYFEIQDNGIGIPVDEQERIFERFYRVDKARSRELG 552

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G G+GLSIV + I  HG  + + S     +  +  +
Sbjct: 553 GTGIGLSIVRNIIKQHGSEIKVESRVGEGSKFSFYL 588



 Score = 44.5 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 17/139 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           K   ++ +      IL ++   +   D    +   N +  +++ ID   +        L 
Sbjct: 245 KIAEISKEKNRIEAILKSMVDGVIATDSEGRVSLINPAAQKIFNIDEQAIKGKNLISSLF 304

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRGG 411
              R    L   L+            K S + +  +  P+ + +               G
Sbjct: 305 NH-RLDMYLQRSLD-----------EKESISREIIYQNPDKKIIQTTFIPLLGDNKDING 352

Query: 412 TIWMFENLTVQVDLETKYN 430
            + +  ++T    LET  N
Sbjct: 353 GVIVLTDITELRKLETVRN 371


>gi|312886386|ref|ZP_07745996.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311301171|gb|EFQ78230.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 867

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 95/599 (15%), Positives = 207/599 (34%), Gaps = 42/599 (7%)

Query: 212 AGDILWANIS------YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF--- 262
            G + + N +      +    +         +        + I   M+ +          
Sbjct: 289 DGKLTYLNTAGRQMMGFNNMEDALQDAHHYLMPTEVDKINQVILPAMLKNGRWSGELLYR 348

Query: 263 CETVSTLEHGNNKSYKIVRVLNSF--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA 320
                    G+  +  I   L     G A +  D+  EI +  +  +   ++ N    I 
Sbjct: 349 HAVTGQPIPGHVNTLLIKDPLTEEPLGRATVVRDLRNEIALKKEQQNLITVVENSADMIV 408

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL---EFLRSANKLPEQLNWKTWKEN 377
           + D    + + N++  +L   D        +    +     L      P  L    W   
Sbjct: 409 VTDLEGNVTYINKAGQQLIGADNIEECYKKALGYFMPDATHLLGKEVRPNMLKNGAWAGE 468

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
           I   +  +      W   N  T++   T  P G    +  ++  +   +       ++  
Sbjct: 469 IQCRHFKTGEAIPAWL--NAFTVNDPATGEPIG-FASVTRDMRAEKAAQQALAQSEELFR 525

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +        + +   + +I   N  + +            +    + A   +   E D  
Sbjct: 526 KITIASPAALWMTDINSQITYVNEVWINWTGY--------SLAEQLGAGWLKAVVEEDRT 577

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSI---IPLPNAQTMLTFVNVTDSVRAERA 554
                + + F+  +          +D  L Y I    P  N     T          E  
Sbjct: 578 TAANKLTSDFERHKFHESQFRIKSTDGQLRYIICTGNPQYNTHGAFTGYIGACVDITE-- 635

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                  L++    K+ F+   S+EL++P+T+I  +T LL++      + K++  +  ++
Sbjct: 636 -------LKQLQRQKDDFIGIASHELKTPVTSIKAYTQLLESMMRKKGDLKEAGMISKMN 688

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  L+ D+LD+  + +G ++ + +    N ++ EV + +     ++ +     +D
Sbjct: 689 VQINRLTMLIEDLLDVTKITSGRLQFHQTWFNFNQMMQEVVEDLQRTTAKHTLIEDFNAD 748

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     +D+ R+ Q+   +++NA+ +S     +I++ A +N +   SV++ G  I +D 
Sbjct: 749 TE---IYSDKDRVGQVLINLITNAIKYSPDSDEIIIRTAIENNEVQVSVQDFGIGIAQDK 805

Query: 735 CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              VF +F            G+GLGL I    I   GG + + S +   +     +P K
Sbjct: 806 IDKVFEQFYRVSGDKEHTFPGLGLGLYISSEIIKREGGKIWVDSVEGKGSKFCFSLPIK 864



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 69/187 (36%), Gaps = 18/187 (9%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE---IDLAF 345
           AG  ID++ EI   D+      ++ N +  I++   +  L + N +  ++     ++ A 
Sbjct: 253 AGTVIDITPEINTRDEQQKLLFLIENSSDFISLSTWDGKLTYLNTAGRQMMGFNNMEDAL 312

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY----KSSETHKDTWHLPNGQTLH 401
              +           +   LP  L    W   +   +    +    H +T  + +  T  
Sbjct: 313 QDAHHYLMPTEVDKINQVILPAMLKNGRWSGELLYRHAVTGQPIPGHVNTLLIKDPLTEE 372

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +       G   +  +L  ++ L+ +   L+ V    +++ ++ + V   +G +   N 
Sbjct: 373 PL-------GRATVVRDLRNEIALKKEQQNLITV----VENSADMIVVTDLEGNVTYINK 421

Query: 462 AFRSLWK 468
           A + L  
Sbjct: 422 AGQQLIG 428



 Score = 44.5 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 29/175 (16%)

Query: 143 LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
           L A T ND      G   G  +  R      + +E A      + L+    +F+ +  + 
Sbjct: 484 LNAFTVNDP---ATGEPIGFASVTR-----DMRAEKA----AQQALAQSEELFRKITIAS 531

Query: 203 DFLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
              +W  D    I + N  +         E  G  + KA+ E             ++S  
Sbjct: 532 PAALWMTDINSQITYVNEVWINWTGYSLAEQLGAGWLKAVVEE----DRTTAANKLTSDF 587

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQ 304
               F E+   ++  + +   I+   N          G  G  +D+++   +  Q
Sbjct: 588 ERHKFHESQFRIKSTDGQLRYIICTGNPQYNTHGAFTGYIGACVDITELKQLQRQ 642


>gi|223937764|ref|ZP_03629665.1| GAF sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223893557|gb|EEF60017.1| GAF sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 2077

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 153/348 (43%), Gaps = 21/348 (6%)

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII---TSFDDERKSLQGT 517
             A   L   ++   +    +  +  +     N  +       ++    S   E +S Q  
Sbjct: 1550 KAVMELSSFDQFSPTHQAFLDQLVESIGIVLNTIEANTRTEDLLKQSQSLAKELQSRQEE 1609

Query: 518  LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            L+  +  + E ++  L   Q        T+  +A +AL EK + L    + K+ F+ ++S
Sbjct: 1610 LQKTNQELQEKAM--LLAEQNAEVERKNTEVEQARQALEEKAKQLALTSKYKSEFLANMS 1667

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +ELR+PL +++   D L  +  G+L  KQ ++ + I AS   LL+L+NDILDL+ +++G 
Sbjct: 1668 HELRTPLNSLLILADQLAHNVEGNLTPKQIEFSKTIHASGNDLLSLINDILDLSKIESGT 1727

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
            + L+   +   +L + V+++        ++   V  D +L    + D QRL Q+   +LS
Sbjct: 1728 VTLDIIEMRFIELQDYVRRTFNHVAESKSLEFDVELDSELPRHMLTDSQRLEQVIRNLLS 1787

Query: 697  NAMDFSSKGSTVILKAARDNGD-------------FIFSVKNNGSSIPEDMCKSVFNRFV 743
            NA  F+ +G   +  A    G                FSV + G  IP +  + +F  F 
Sbjct: 1788 NAFKFTERGGVTLSIALVTEGWSPDRETLNQARSVIAFSVSDTGIGIPPEKQQIIFEAFQ 1847

Query: 744  SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   R   G GLGL+I      L GG + ++S+    +T    +P
Sbjct: 1848 QADGSTSRKYGGTGLGLAISREIARLLGGEIRLASAIGQGSTFTLYLP 1895


>gi|160891489|ref|ZP_02072492.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|317478405|ref|ZP_07937568.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156858896|gb|EDO52327.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|316905441|gb|EFV27232.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 388

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 167/338 (49%), Gaps = 16/338 (4%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G I   N A  +      + L     +RN        +     +   AAI+   D E ++
Sbjct: 49  GDILRCNNALSAAGGCGTHDLCEHCPVRNAIENA---FVVQKNFTDLAAILNLRDSEGRT 105

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            +     +S   +E           ++T  ++T   + E  L    E    AD  K+ F+
Sbjct: 106 TECNA-YVSGEYMEIE----DRDCMVITVHDITRLKQVEAELKLAREKAENADRSKSVFL 160

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF++LL +    S + +++Q++E + +++ +L  L+ DILDL+ +
Sbjct: 161 ANMSHEIRTPLNAIVGFSELLAS---ASTDEEKTQFLEIVQSNNEMLQQLIADILDLSKI 217

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHE--NNIRIKVISDGKLGSFVADRQRLLQIF 691
           +AG ++  +S + +N ++ +++Q    ++ E  + ++I   +  K  +   DR RL Q+ 
Sbjct: 218 EAGTLEFVFSDVDINQMMFDLEQQFRMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVV 277

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           S  ++NA+ F+ +GS + L          F VK+ G+ IP++    VF RFV    + ++
Sbjct: 278 SNFMTNALKFTQEGS-ITLGFRPYEEGLYFYVKDTGTGIPQEKLPHVFERFVKL--KQEK 334

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGLSI ++ +   GG + + S +   +T    +P
Sbjct: 335 NGTGLGLSICQTIVRKLGGEIGVESEEGAGSTFWFTLP 372


>gi|17228473|ref|NP_485021.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130324|dbj|BAB72935.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1186

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 147/869 (16%), Positives = 297/869 (34%), Gaps = 159/869 (18%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
            I +R     +       L E+  + +++ ++L +     ++ D               + 
Sbjct: 206  ITERKQAEAERERL---LHELETERARFEAVLRQMPAGVMIADAASGK---------LVL 253

Query: 105  IPQTDTDLLS--FENWLKFHHYIKLSKATEKLRKEGQSFD-------------------- 142
              +    +L   FE+ L+   Y  ++      R +GQ +D                    
Sbjct: 254  TNEQAKQILRYQFEDSLELKEYAPVTPF-AAFRCDGQPYDPYEYPLPRSLLTGEVISQEE 312

Query: 143  ----------LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
                      +     +   +  +G+++ +              ++ E      +L    
Sbjct: 313  MLLRWEDNSHIFISVNSAPILDSQGQIAAAAIVF---------QDVTERKHLESELQQRE 363

Query: 193  SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF----QKAIGESRKLFK--- 245
              FK++ ++   ++   D+    L+ + + +  T      F       +G   ++     
Sbjct: 364  QEFKMVAENAPDIISRIDREFRHLYVSPAVEAATGIPPEEFIGKTNTELGMPEEICNFWC 423

Query: 246  EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--SFGEAG----IAIDVSKEI 299
            E +++   +       F     T      + Y+ + V    S G A     +A DV+   
Sbjct: 424  ENLQRAFDTGEKQVVEFSFPTPTGL----RWYQSLIVPEFASDGYATTLINVARDVTDYK 479

Query: 300  TVNDQLTHTYE------------------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
             +   L    E                  I     V IA+ D  +     N++  ++  +
Sbjct: 480  QIEQALRDNEERLRLALTVAQAAQRQLATIFETSPVGIALLDSQQRYVAINQALAQINGL 539

Query: 342  DLAFLATNP-------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
                            S+ +L++         E     ++  N+         + + ++L
Sbjct: 540  TREQHLGRSIAELFGQSDPQLVQVFHDIYTTGEPFISPSFAVNVPGRSDRQPGYYNVYYL 599

Query: 395  PNGQTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQ---------GETIDHLS 444
            P          SN +   + ++  ++T Q+ LE     L +             T++ L+
Sbjct: 600  P-------TTNSNHQVEDVLVYVLDVTEQIRLERGQRFLSETSKVLASSLDYQTTLERLA 652

Query: 445  EG----------VAVFGPDGRIK-----LSNPA----FRSLWKTEENRLSPGTHI----- 480
            +           V +   DG I+       +PA       + +     L+          
Sbjct: 653  QLAVPELADWCTVHMMAEDGLIEQIAVAHVDPAKLEWAEEIRRKYPLNLNDPRGAALTLR 712

Query: 481  ---RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                ++    S         D     I      + ++   L   + ++   S I   +  
Sbjct: 713  TGQSDLLIDISDELLVQSARDPEHLEILRRVGFKSAMTVPLRTQTRTLGVISFISAESGH 772

Query: 538  TMLTFVNVTDSVRAERA-LTEKNEALRK-----------ADEIKNSFVQHVSYELRSPLT 585
                         A RA L   N  L +           A+ IK+ F+  +S+ELRSPL 
Sbjct: 773  KYDQGSMQLAEELAYRASLAIDNAHLYRLAQSDRTKAEAANRIKDEFLAVLSHELRSPLN 832

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             I+G++ +L++ +L     +Q+  +E I  ++ +   L+ D+LD++ +  G M LN +++
Sbjct: 833  PILGWSRILRSKQLSPTKVEQA--LETIERNAKLQAQLIEDLLDVSRILQGKMTLNVASV 890

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             L   +    +++       NI I+        + V D+ RL Q+   +LSNA+ F+  G
Sbjct: 891  NLAATIAAALETVQLAAEAKNIHIQTTLKPISATVVGDQNRLQQVVWNLLSNAVKFTPSG 950

Query: 706  STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVES 763
              + ++  + N      VK++G  I  +    VF  F     A   Q  G+GLGL+IV  
Sbjct: 951  GQIEVQLEQVNLYAQIQVKDSGKGIAREFLPYVFEYFRQEDGATTRQFGGLGLGLAIVRH 1010

Query: 764  FINLHGGHVSISSSDEG--VTTINCRIPS 790
            F  LHGG V + SS       T   R+P 
Sbjct: 1011 FTELHGGTVQV-SSLGQDLGATFTVRLPL 1038



 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 110/313 (35%), Gaps = 32/313 (10%)

Query: 291 IAIDVSKEITVN-----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
              D++    +      +       IL ++T A   FD+N +  + N++ V++     A 
Sbjct: 83  FHQDITNNQQLQLITSPETERQITTILESITDAFVAFDENWHYTYVNQAAVKILHKTPAE 142

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L      DE+          PE +    ++E   +V +      + +  P    L     
Sbjct: 143 LIGKHVWDEVF---------PELVGGLAYQELHRAVVEQVAVSWEEFGEPVQCYLEANAY 193

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLV-------KVQGETIDHLSEGVAVFG-PDGRIK 457
              +G  ++ F ++T +   E +   L+             +  +  GV +     G++ 
Sbjct: 194 PFSQGVAVY-FRDITERKQAEAERERLLHELETERARFEAVLRQMPAGVMIADAASGKLV 252

Query: 458 LSNPAFRSLWKTEENR---LSPGTHIRNIAA-TCSRYYNESDGWDLFAAIITSFDDERKS 513
           L+N   + + + +      L     +   AA  C     +   + L  +++T     ++ 
Sbjct: 253 LTNEQAKQILRYQFEDSLELKEYAPVTPFAAFRCDGQPYDPYEYPLPRSLLTGEVISQEE 312

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTM-----LTFVNVTDSVRAERALTEKNEALRKADEI 568
           +    E  S   +  +  P+ ++Q       + F +VT+    E  L ++ +  +   E 
Sbjct: 313 MLLRWEDNSHIFISVNSAPILDSQGQIAAAAIVFQDVTERKHLESELQQREQEFKMVAEN 372

Query: 569 KNSFVQHVSYELR 581
               +  +  E R
Sbjct: 373 APDIISRIDREFR 385



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/399 (13%), Positives = 124/399 (31%), Gaps = 46/399 (11%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES--RKLFKEEIKKRMIS 254
            + +S+       D+     + N +     +       + IG+    ++F E +      
Sbjct: 107 TILESITDAFVAFDENWHYTYVNQA---AVKILHKTPAELIGKHVWDEVFPELVGGLAYQ 163

Query: 255 SSALEKNFCETVSTLEHGN--NKSYKIVRVLNSFGEAGIAIDVSKE---ITVNDQLTHTY 309
                      VS  E G       +      S G A    D+++        ++L H  
Sbjct: 164 ELHRAVVEQVAVSWEEFGEPVQCYLEANAYPFSQGVAVYFRDITERKQAEAERERLLHEL 223

Query: 310 EI--------LHNLTVAIAIFDQ-NRYLQFHNRSFVEL--WEIDLAFLATNPSNDELLEF 358
           E         L  +   + I D  +  L   N    ++  ++ + +      +       
Sbjct: 224 ETERARFEAVLRQMPAGVMIADAASGKLVLTNEQAKQILRYQFEDSLELKEYAPVTPFAA 283

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GG 411
            R   +  +   +   +  +     S E     W   +   + + V S P          
Sbjct: 284 FRCDGQPYDPYEYPLPRSLLTGEVISQEEMLLRWE--DNSHIFISVNSAPILDSQGQIAA 341

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +F+++T +  LE++     +      ++  + ++    + R    +PA  +      
Sbjct: 342 AAIVFQDVTERKHLESELQQREQEFKMVAENAPDIISRIDREFRHLYVSPAVEAATGIPP 401

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAA-IITSFD-DERKSLQGTLELLSD-SVLEY 528
                      I  T +      +  + +   +  +FD  E++ ++ +    +     + 
Sbjct: 402 EEF--------IGKTNTELGMPEEICNFWCENLQRAFDTGEKQVVEFSFPTPTGLRWYQS 453

Query: 529 SIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEAL 562
            I+P   +    T       +VTD  + E+AL +  E L
Sbjct: 454 LIVPEFASDGYATTLINVARDVTDYKQIEQALRDNEERL 492



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 101/364 (27%), Gaps = 55/364 (15%)

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
           C ++           +    +       AE      +L    + F+ +   +   V   D
Sbjct: 186 CYLEANAYPFSQGVAVYFRDITERKQAEAERERLLHELETERARFEAVLRQMPAGVMIAD 245

Query: 211 QA-GDILWANISYK-----------KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            A G ++  N   K           +  E   +    A     + +         S    
Sbjct: 246 AASGKLVLTNEQAKQILRYQFEDSLELKEYAPVTPFAAFRCDGQPYDPYEYPLPRSLLTG 305

Query: 259 EKNFCETVSTLEHGNNKSY---KIVRVLNSFGEAGIA----IDVSKEITVNDQLTHTYEI 311
           E    E +      N+  +       +L+S G+   A     DV++   +  +L    + 
Sbjct: 306 EVISQEEMLLRWEDNSHIFISVNSAPILDSQGQIAAAAIVFQDVTERKHLESELQQREQE 365

Query: 312 L----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
                 N    I+  D+     + + +      I           +E +    +   +PE
Sbjct: 366 FKMVAENAPDIISRIDREFRHLYVSPAVEAATGIPP---------EEFIGKTNTELGMPE 416

Query: 368 QLNWKTWKENIFSVYKSSETH--KDTWHLPNG-QTLHVIVTS--NPRGGTIWMF---ENL 419
           ++    W EN+   + + E    + ++  P G +    ++       G    +     ++
Sbjct: 417 EI-CNFWCENLQRAFDTGEKQVVEFSFPTPTGLRWYQSLIVPEFASDGYATTLINVARDV 475

Query: 420 TVQVDLETKYNTLVKVQGETI--------------DHLSEGVAVFGPDGRIKLSNPAFRS 465
           T    +E       +     +              +    G+A+     R    N A   
Sbjct: 476 TDYKQIEQALRDNEERLRLALTVAQAAQRQLATIFETSPVGIALLDSQQRYVAINQALAQ 535

Query: 466 LWKT 469
           +   
Sbjct: 536 INGL 539


>gi|144897852|emb|CAM74716.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 844

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 11/245 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            RAE A         +A  +K+ F+  +S+ELR+PL  IIGF +L+K     + + +  +
Sbjct: 605 QRAEEA----RLRAEEASRMKSEFLASMSHELRTPLNGIIGFAELIKD---DAADEEMRE 657

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             E I  S + LLNLVN ILD+A ++AG M L   T+ +  L+ EV     +      + 
Sbjct: 658 NAEIIEKSGSHLLNLVNTILDVAKIEAGAMTLARETVDIRTLVTEVAAIHQSGADAKGLD 717

Query: 669 IKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +V  +D    + V D  R+ Q+   +LSNA+ F+  G    + AA D    +  V ++G
Sbjct: 718 FQVQLADDLPPALVTDPVRVRQVLHNLLSNAVKFTQAGRVHTVVAA-DKDSVVIRVIDSG 776

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D+   +F +F            G GLGL++    + L GG +S+ S     +T  
Sbjct: 777 PGIALDLQDKIFEKFHQGDAFLTRSHGGTGLGLTLARHLVELMGGEMSLESQVGQGSTFV 836

Query: 786 CRIPS 790
             +P+
Sbjct: 837 FTLPA 841


>gi|86751073|ref|YP_487569.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574101|gb|ABD08658.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1158

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 96/548 (17%), Positives = 198/548 (36%), Gaps = 64/548 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++      + +    I+     AI     +  +   N++   L+         +   D +
Sbjct: 352 ARRAEQTIERSRLAAIVEGSNDAILAKSVDGIVIDWNKAAERLFGYSSHEAVGSKVYDLI 411

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSET---HKDTWHLPNGQTLHVIVTSNPRG-- 410
                    +PE  + +  +  +    +  +     +      +G  + V ++ +P    
Sbjct: 412 ---------VPE--DRREEELRMLERMRHGDPMTYFRTRRIRRDGSLVDVAISLSPIRSE 460

Query: 411 -----GTIWMFENLTVQVDLETKYNTLVK------------------VQGETIDHLSEGV 447
                G      ++T  V  E +   L                    +Q   ++  +  V
Sbjct: 461 VGALIGIASAARDITELVAAEKQIRELNASLERQVADRTAMLEKSMTLQTAILERAAYAV 520

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRL---------SPGTHIRNIAATCSRYYNESDGWD 498
                DG I L NPA   +   +   L              + + A    R   E     
Sbjct: 521 IATNVDGTITLFNPAAERMLGYKAEELIGRATAMLFHDPQELLDRADAMRRQGIEVGSGQ 580

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLP-----NAQTMLTFVNVTDSVRAE 552
                + + +D   SL   +    + + +  ++  L      +   +   V++T+ ++ E
Sbjct: 581 RVVQALLAHNDPDTSLWTYVGKTGNRIPVRLTLCRLRTKDGTDLGVLGIAVDLTEQLKYE 640

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L     +  +A   K  F+ ++S+E+R+PL  IIG+ DL    +  +L     + VE 
Sbjct: 641 DELKAARASAEQAGAAKADFLANMSHEIRTPLNGIIGYADLALEDQ--TLVPTTRRQVER 698

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  +S  L  +++DILD + ++A  +KL    + L +L++     I  K  E  +++   
Sbjct: 699 IFEASDSLRVIIDDILDFSKIEACGLKLESKPLYLTELIDNCVSIIQPKAEEKGLKLLAT 758

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
           +       + D  RL Q+   +++NA+ F+S GS  ++ +     D       +V + G 
Sbjct: 759 ARDTPAVLMGDAARLRQVLLNLMNNAVKFTSAGSVELIVSCVSRADPMVRLRIAVVDTGI 818

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN- 785
            I +   + +F RF         +  G GLGL+I +  +      + I S     +T   
Sbjct: 819 GISKVDQQGLFKRFSQADETISRKYGGTGLGLAISQRIVQAMQSELKIDSDQGRGSTFYF 878

Query: 786 -CRIPSKE 792
              +P  E
Sbjct: 879 EVELPIAE 886



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 86/308 (27%), Gaps = 55/308 (17%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             +  + +   S    + +  +  +  +   G ++  N + ++     G    +A+G   
Sbjct: 351 QARRAEQTIERSRLAAIVEGSNDAILAKSVDGIVIDWNKAAERLF---GYSSHEAVGSKV 407

Query: 242 -KLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNKSYKI--------VRVLNSFGE 288
             L   E ++    RM+             +     +     +          V    G 
Sbjct: 408 YDLIVPEDRREEELRMLERMRHGDPMTYFRTRRIRRDGSLVDVAISLSPIRSEVGALIGI 467

Query: 289 AGIAIDVSKEITVNDQLTHT----------------------YEILHNLTVAIAIFDQNR 326
           A  A D+++ +    Q+                           IL     A+   + + 
Sbjct: 468 ASAARDITELVAAEKQIRELNASLERQVADRTAMLEKSMTLQTAILERAAYAVIATNVDG 527

Query: 327 YLQFHNRSFVELWEIDLAFLATN------PSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
            +   N +   +       L             ELL+   +  +  + +   + +  + +
Sbjct: 528 TITLFNPAAERMLGYKAEELIGRATAMLFHDPQELLDRADAMRR--QGIEVGSGQRVVQA 585

Query: 381 VYKSSETHKDTWHL--PNGQTLHVIVT----SNPRG---GTIWMFENLTVQVDLETKYNT 431
           +   ++     W      G  + V +T        G   G + +  +LT Q+  E +   
Sbjct: 586 LLAHNDPDTSLWTYVGKTGNRIPVRLTLCRLRTKDGTDLGVLGIAVDLTEQLKYEDELKA 645

Query: 432 LVKVQGET 439
                 + 
Sbjct: 646 ARASAEQA 653



 Score = 38.0 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 65/198 (32%), Gaps = 35/198 (17%)

Query: 157 GRVSGSCAFLRILSLDGIYSEL-----AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
           G  S +     +++ +    EL      +   +   L   +++   + +   + V   + 
Sbjct: 466 GIASAARDITELVAAEKQIRELNASLERQVADRTAMLEKSMTLQTAILERAAYAVIATNV 525

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET------ 265
            G I   N + ++     G   ++ IG +  +   + ++ +  + A+ +   E       
Sbjct: 526 DGTITLFNPAAERML---GYKAEELIGRATAMLFHDPQELLDRADAMRRQGIEVGSGQRV 582

Query: 266 ---------------VSTLEHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQ 304
                              + GN    ++       +     G  GIA+D+++++   D+
Sbjct: 583 VQALLAHNDPDTSLWTYVGKTGNRIPVRLTLCRLRTKDGTDLGVLGIAVDLTEQLKYEDE 642

Query: 305 LTHTYEILHNLTVAIAIF 322
           L            A A F
Sbjct: 643 LKAARASAEQAGAAKADF 660


>gi|302875217|ref|YP_003843850.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307688898|ref|ZP_07631344.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302578074|gb|ADL52086.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 554

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 200/488 (40%), Gaps = 21/488 (4%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL++++    + D+   + F N++  E+++ +   +  + +     E  + +  +    +
Sbjct: 47  ILNSISEGFILLDEEFKINFLNKAAKEIFQFNDVSIEKDLTYKNREEIKKYSKDIINIYD 106

Query: 371 WKTWKENIFS--VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
               K  I      K     K  +   +   +     S     TI    ++T     E  
Sbjct: 107 EYILKHEILKKKAIKIQVKDKVKYISISSTIVEEKDNSLQTSKTIITLNDVTEATINEMI 166

Query: 429 YNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN--IAA 485
                    E ++++   + V+  P G +K  N   +   +     ++    +++  +  
Sbjct: 167 SEEQKFFIDEIVNNIDLPLCVYLFPSGEMKYINEKMKKAMRLNSGYINNIFKVQDQTMHE 226

Query: 486 TCSRYYNESDGWDLFA--AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           T    + E D          I   D+  K++   L+           IP  N    + +V
Sbjct: 227 TLMEVFKELDATRCPKNYDPIAVVDENNKTVYYRLKF----------IPYENRDGEIKYV 276

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +       + +    E L K + +KN F   +S+ELR+PLT I     L        + 
Sbjct: 277 YLYGID-VTKEIKHSLE-LEKVNFMKNEFFNLISHELRTPLTLIYSSIQLANEIYKTEIT 334

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +  I+ ++  LL LVN+ILD++ ++AG M LN +   +     ++ +S+    +
Sbjct: 335 ENLDKTLTRINKNTGRLLKLVNNILDISKLEAGYMVLNITNTEIVSNTEDIVESVIYHSN 394

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             N+ +   +  +      D+++  +I   +LSNA+ FS+   ++ +        FI SV
Sbjct: 395 MKNVNVVFDTYEEEVYVHVDKEKYERIVLNLLSNAIKFSNDNKSIFVTMDFTENHFILSV 454

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  IP++   ++FNRF    +       G GLGLS+V+  ++L  G +S+ S +   
Sbjct: 455 KDQGVGIPKEKISTIFNRFYQVDNSLTRNAEGTGLGLSLVQKLVDLMDGEISVDSEEGVG 514

Query: 782 TTINCRIP 789
           TT   ++P
Sbjct: 515 TTFTVKLP 522


>gi|168703357|ref|ZP_02735634.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1156

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 475 SPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +   H++++     R   E     +         D++ ++L+ T   L     E     +
Sbjct: 378 NYRAHLKDLLEETQRQSEELQAQTEELRVSNEELDEQGRALRETQTRLEQQQTELEQTNV 437

Query: 534 P-NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               QT L      ++ RA+  L  +   L +A   K+ F+ ++S+ELR+PL + +    
Sbjct: 438 QLEEQTQLMEAQRDEATRAKSELQVQARELERASRYKSDFLANMSHELRTPLNSSLILAK 497

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  ++ G+L ++Q +Y E I A+   LL L+NDILDL+ ++AG M++    + L  L  
Sbjct: 498 LLADNRDGNLTAEQVRYAETIRAAGNDLLALINDILDLSKIEAGHMEVRPGPVPLASLAE 557

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           ++ +       E  +   V            DRQRL Q+   +LSNA+ F+  G   +  
Sbjct: 558 DLTRVFQPIADEKKLGFAVRLAPGCPEGIETDRQRLEQVLKNLLSNALKFTESGEVALEA 617

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
           +A       F+V++ G  I E   + VF  F        R   G GLGLSI      L G
Sbjct: 618 SAAPGDRIAFAVRDTGIGIAEHQQQMVFEAFRQADGTTNRKHGGTGLGLSIARELARLLG 677

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +T    IP+
Sbjct: 678 GDIHLASEPGRGSTFTVTIPT 698


>gi|257454302|ref|ZP_05619568.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
 gi|257448319|gb|EEV23296.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
          Length = 555

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 122/240 (50%), Gaps = 8/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++     +ADE+K +F+ ++S+E+R+P+  IIG  +LL+ +    L+++Q  Y++ I 
Sbjct: 165 LRQQRYQAERADEVKTAFLANMSHEIRTPMNGIIGILELLEQT---PLDTQQQHYIKSIK 221

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL +VNDILDL+ V++G ++     + L  L  +V Q       +N++ +     
Sbjct: 222 TSNEHLLTIVNDILDLSKVESGKIRFESIPVDLAQLCQDVYQCFLATAKDNSVELTFDYP 281

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIP 731
             L  +V  D  R+ QI   +++NA+ F+ K   V ++A    D     F+V + G  I 
Sbjct: 282 DNLPKYVNTDPVRVRQILINLVNNAIKFTPKQGKVTIQAMNGGDKHQIKFNVIDTGVGIK 341

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +F+ +        R   G GLGLS+ ++     GG + ++S     +T    +P
Sbjct: 342 PESLAVIFDAYNQADKFTHRLYGGTGLGLSVCKALAEGMGGTIKVTSEKNKGSTFTLSLP 401


>gi|163943145|ref|YP_001648029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865342|gb|ABY46401.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 611

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 149/392 (38%), Gaps = 27/392 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 233 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 292

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 293 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 345

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            ++ +  FV +VS+E
Sbjct: 346 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IEQERREFVANVSHE 391

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 392 LRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 450

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 451 LMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNAL 509

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 510 KYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 569

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  I  HGG V   S +   TTI   +P
Sbjct: 570 LAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 601


>gi|186682032|ref|YP_001865228.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464484|gb|ACC80285.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 629

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 125/252 (49%), Gaps = 13/252 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R E+ L +  E  + + + K+ F+ ++S+ELR+PL  I+G+T +L+ ++  SL+ K 
Sbjct: 142 ERKRIEKELRQAEEVAQNSSQAKSEFLANMSHELRTPLNGILGYTQILQRTE--SLSEKG 199

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  I    + LL L+ND+LDL+ ++A  ++L      L   ++ V +    +  +  
Sbjct: 200 RKGLSVIYQCGSHLLTLINDVLDLSKIEARKLELYPVDFYLPAFIDSVTEICRIRAEQKV 259

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNG--- 717
           I   +  D  L +    D +RL Q+   +LSNAM F+ +GS      VI + +  NG   
Sbjct: 260 IAFNIEIDPNLPTGIHGDEKRLRQVLINLLSNAMKFTHQGSVTFKTQVINQESNANGKTN 319

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               F V + G+ I  +  + +F  F    + + Q  G GLGL+I +  + L GG + + 
Sbjct: 320 YKIRFEVVDTGTGITPEQAEKIFQPFEQVGSQKRQSEGTGLGLAISQKIVLLMGGQIKVQ 379

Query: 776 SSDEGVTTINCR 787
           S     +T    
Sbjct: 380 SEFGKGSTFWFE 391


>gi|317476674|ref|ZP_07935918.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907137|gb|EFV28847.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 867

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/506 (19%), Positives = 211/506 (41%), Gaps = 29/506 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  + +Q     ++  ++   +  +D   ++ F NR+  E+  +            ++  
Sbjct: 371 QQRLVEQRDEFDKMFCSIRDGLITYDTEMHIHFVNRALAEMLGLSSDTYMARSYEGQVAG 430

Query: 358 -----FLRSANKLP---EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                ++   N LP   EQ+        I       E  K T+   +G+ + +    +  
Sbjct: 431 SIFHIYMNGENILPTLLEQVVRDKKPVVIPEKAFMQENVKGTYFPVSGEVVPIFAK-DKL 489

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G   +  N++   +++ ++       G  I+  S  +  +  + R+K  +     L + 
Sbjct: 490 TGMAIVCRNISED-EMQRRF------FGMAIEESS--IYPWQYNTRLKCFHFPVGLLKRF 540

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             +  +       +                 + I+    + R S +           E+ 
Sbjct: 541 NYSDHTGYISREELDRVIHPEDLLRIRKHFDSIILGREPNSRMSFRLQNTAGGYEWWEFR 600

Query: 530 IIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                          +    ++      E  L    +   +AD++K++F+ ++S+E+R+P
Sbjct: 601 STAYEGLTADIPYMVLGVCQSIQRYKNTEDELIAARDKALQADKLKSAFLANMSHEIRTP 660

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+GF+DLLK    G  + +  Q+VE I+ + T+LL L+NDILDL+ +++G M   +S
Sbjct: 661 LNAIVGFSDLLKD-LEGFSSEEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFS 719

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
           +  L  ++ +V  S    M +  + ++       G S + D  RL Q+ + +++NA  F+
Sbjct: 720 SYNLTFIMQQVYDSQRLSMPQ-GVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFT 778

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           +KG  ++     D+G  +  V++ GS I ++    +F RF    +  Q  G GLGLSI +
Sbjct: 779 TKGYILLGYRVEDSGHTVIFVEDTGSGISDENLGHIFERFYKADNFTQ--GAGLGLSICQ 836

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
           + +    G ++++S     T    RI
Sbjct: 837 TIVERLNGTITVTSKLGKGTRFEVRI 862


>gi|325108211|ref|YP_004269279.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324968479|gb|ADY59257.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 797

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 156/398 (39%), Gaps = 39/398 (9%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           ++            + +  G+     DG    SN  +RS   +          +  + A 
Sbjct: 226 SQSQENENKFRRISESVPFGIFQVDTDGFCGYSNNIYRSFCMSAGVTRIEHRWVEILPAD 285

Query: 487 CSRYYNES--------------------DGWDLFAAIITS--FDDERKSLQGTLELLSDS 524
                 +                      G   +  I+ S  F D+     GT+E +++ 
Sbjct: 286 VREQTQQQWAQAVADFTSFTGVYLTQTVSGEQRWLEILISPVFSDDGAVFVGTIEDITEK 345

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYEL 580
            L +  +        ++   +  + R  +     L    E   ++   K+ F+ ++S+E+
Sbjct: 346 KLAHDQLGKTADDLRISKEQLEKNSRRLQDVVEQLEVAKERAEQSARSKSEFLANMSHEI 405

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+T I+G+TD+L        N      +  I  +   LL ++NDILD++ ++AG M++
Sbjct: 406 RTPMTAILGYTDVLLHEVAD--NPHFQDSLTTIKRNGEHLLQIINDILDISKIEAGKMEV 463

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAM 699
                    L+ +V   +A +  E ++ +      +L      D  RL QI   ++SNA+
Sbjct: 464 EIIPTSPTQLIADVYTLMAVRAQEKDVELSYEFASRLPHTIQTDPTRLRQILLNLVSNAI 523

Query: 700 DFSSKGSTVILKAARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            F+ KG  V ++AA + G            V+++G  + ++    +F  F        RR
Sbjct: 524 KFTDKGG-VRIRAAIEQGLPGQTDPRLAIYVQDSGIGMSDEQKAKLFQPFTQADTSMSRR 582

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +      GG +S+ S     +T    I
Sbjct: 583 FGGTGLGLTISQRLAQKLGGKISVESMPGKGSTFCVSI 620



 Score = 45.3 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 73/188 (38%), Gaps = 18/188 (9%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
           +L+     F LV  T          R+S     LRI     + +E  +      +   + 
Sbjct: 184 QLQSAAIIFSLVLHTFRIRTFS---RMSE----LRICD--EMRAE--KLKEAVSQSQENE 232

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV--FQKAIGESRKLFKEEIKK 250
           + F+ + +S+ F ++  D  G   ++N  Y+    + G+     + +       +E+ ++
Sbjct: 233 NKFRRISESVPFGIFQVDTDGFCGYSNNIYRSFCMSAGVTRIEHRWVEILPADVREQTQQ 292

Query: 251 RMISSSALEKNFCET-VSTLEHGNNKSYK--IVRVLNSFGE--AGIAIDVSKEITVNDQL 305
           +   + A   +F    ++    G  +  +  I  V +  G    G   D++++   +DQL
Sbjct: 293 QWAQAVADFTSFTGVYLTQTVSGEQRWLEILISPVFSDDGAVFVGTIEDITEKKLAHDQL 352

Query: 306 THTYEILH 313
             T + L 
Sbjct: 353 GKTADDLR 360


>gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 915

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 123/653 (18%), Positives = 236/653 (36%), Gaps = 67/653 (10%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD--ILWANISYKKNTETEGIVFQK 235
           LA    +  +L       + + + +   V   D   D  I + N ++       G   ++
Sbjct: 19  LAALKAEVTRLRLQNHFLRTVVNEMTSGVIVADAQPDYPITFVNRAF---CTITGYAPEE 75

Query: 236 AIGESRKLF-----KEEIKKRMISSSALEKNFCETV-STLEHGNNKSYKI--VRVLNSFG 287
            IG            +    R+  + A  +   E + +  + G     +I    V +  G
Sbjct: 76  VIGRHCLFLQGPGTDQAAVTRICEAIAAARPVHERLLNYRKDGQPFWSQIAISPVRDDQG 135

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV---ELWE 340
                 G+  DV+ ++ V   L    ++L    V          L    +  V   E++ 
Sbjct: 136 RVTAFIGLQTDVTAQVLVEQALAEREQLLR--AVGKMAQIGGWELDLVTQRMVWSEEMFA 193

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNG 397
           I    +   P+ D  L F                    F    ++    D    +    G
Sbjct: 194 IHELPIGEPPTPDVALWFY--------PPEVHHLVREAFERCLATGAEWDIELPFRTARG 245

Query: 398 QTLHV--IVTSNPRGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VF 450
           Q+  V  I       G I      F+++T   + E       +      D L   +  +F
Sbjct: 246 QSRWVRSIGQPVWEDGQIRKLRGTFQDITRSKENELALRASEQRYRMLADMLPGTIVFMF 305

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
               R+ L   A       +  R              +  ++E     L      +   +
Sbjct: 306 DTGLRLTLVAGADLKRLGIDAARFEGQC--------LTDLFDEPHRSVLLPLCYQALLGQ 357

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKA 565
              +  T       + + SI+P+  A       ++   N+T   +    L    EA  + 
Sbjct: 358 SSRIDYTFR---GEIFDTSIMPIERASGQISGGLIVGRNITAERQITADLLRAKEAAERT 414

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  + +F+  +S+E+R+PL  +I   +LL T    +L   Q   +E I      LL LVN
Sbjct: 415 ERAQAAFLSAISHEMRTPLNAVIASAELLLT---DTLTPSQRSLIETIRIGGEALLALVN 471

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           ++LDL+ ++AG +++      +  +++ V      +  +  + I+ + D  L +  V+D 
Sbjct: 472 NVLDLSKIEAGRVEIAAEPTDVRAIVHAVLNLFKREADQKGLLIEAVIDPHLPALIVSDP 531

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            RL Q+   ++SNA+ F+ +G  +I    +  A D+     +V++ G+ I       +F 
Sbjct: 532 ARLRQMLMNLVSNAIRFTDRGGVLITASVIGMATDHPQVEIAVRDTGTGISAQQRSHLFQ 591

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F  V N    Q  G GLGL+I     +L GG ++++      +T    +P +
Sbjct: 592 PFNHVDNDQTRQ-SGAGLGLAISAQLAHLMGGELTVAGQPGQGSTFTVTLPLQ 643


>gi|154688138|ref|YP_001423299.1| YycG [Bacillus amyloliquefaciens FZB42]
 gi|154353989|gb|ABS76068.1| YycG [Bacillus amyloliquefaciens FZB42]
          Length = 611

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 160/416 (38%), Gaps = 32/416 (7%)

Query: 385 SETHKDTWHLPNGQTLH-VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETID 441
           S+  K    L  G     V    +   G +   F +LT ++ D +       +     I 
Sbjct: 211 SDMRKQAMELAKGNFSRKVRKYGHDEIGQLATTFNHLTRELEDAQAMTEGERRKLSSVIA 270

Query: 442 HLSEGVAVFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           ++++GV     +G I L N PA   L  + E  L               + +  +  D  
Sbjct: 271 YMTDGVIATNRNGAIILLNSPALELLNVSRETALEMPITSLLGIKENFTFEDLVEQQDSM 330

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              I   DDE   L+          + +S+I   + +       + D    E        
Sbjct: 331 LLEIER-DDETTVLR----------VNFSVIQREHGKIDGLIAVLYDVTEQE-------- 371

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              K D  +  FV +VS+ELR+PLT +  + + L      + +    +++      +  +
Sbjct: 372 ---KLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDI-APRFLMVTQNETERM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + LVND+L L+  D+   + N   I +   ++ +         E ++        +    
Sbjct: 428 IRLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFE-MTKEQHVEFIRELPDRNLYV 486

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSV 738
             D+ ++ Q+   I+SNA+ +S +G  V      +  +     SVK+ G  IP+   + V
Sbjct: 487 EIDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKV 546

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF        R   G GLGL+I +  +  HGG +   S +   T I   +P KE
Sbjct: 547 FDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLPYKE 602


>gi|186473973|ref|YP_001861315.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184196305|gb|ACC74269.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 939

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 155/391 (39%), Gaps = 23/391 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +  +   E             I+++ + V V      R    N A   L       L   
Sbjct: 310 IAERQHAEEAVRESEHFLNSIIENIPDMVFVKEAATLRFVRFNKAAEDLLGYRREELIGQ 369

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +      A  + ++   D   L +  +    +E    +  L L+    +    +      
Sbjct: 370 SVHDLFPADEADFFALKDRAVLESRQMIDVPEEPVHTRHGLRLVHTMKIPILDVRGEPQF 429

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSFVQHVSYE 579
            +    ++T+   AE  L    E L                     ++ K+ F+ H+S+E
Sbjct: 430 LLGISRDITEHKHAEEELRRYREHLEDMIRERTAELAIAKEHADAANQAKSDFLAHMSHE 489

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  I+G+  +LK  K  +L+ +Q   +  I  S   LL L++DILD+A ++AG M+
Sbjct: 490 LRTPLNGILGYAQILKRDK--NLDRRQVDGLMVIQRSGEHLLTLIDDILDMAKIEAGRME 547

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
           LN+S + L   ++ + +++  K  E  +         L +    D  RL Q+   ++SNA
Sbjct: 548 LNFSDVPLARFIHFIVETMRVKATEKGLEFACEMAPDLPAGVRVDEIRLRQVLLNLISNA 607

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLG 757
           + F+ +GS  +           F V++ G  I E   +++F  F   +    R  G GLG
Sbjct: 608 IRFTEQGSVRLRVGFMPPTRLCFEVRDTGIGIEEARLEAIFRPFEQVSDARYRSGGTGLG 667

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I    + L G  + + S     +  +  +
Sbjct: 668 LAISRELVRLMGSEIHVESHHGTGSAFSFEL 698


>gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1002

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 146/296 (49%), Gaps = 17/296 (5%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADE 567
           R S     E+++   L +  + +  AQ +        +  S +++  L EK      A+ 
Sbjct: 469 RHSFALWKEVVNGKSLAWESLEIEAAQELKNTLLLAALEFSKQSQVILEEKTRQANAANL 528

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+ELR+PL  I+GFT ++  ++  SL+S+Q +Y+  I+ S   LL+L+ND+
Sbjct: 529 AKSQFLAKMSHELRTPLNAILGFTQMM--NRDSSLSSQQQEYLGIINRSGEHLLSLINDV 586

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           L+++ ++AG + LN +   L++L+  VK+ +  K     + + V  D +L  ++  D  +
Sbjct: 587 LEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLELTVHQDEELPKYIEGDESK 646

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           L QI   ++ NA+ F+  G   + L                 VK+ G  I +D  +++F 
Sbjct: 647 LRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQLEVKDTGIGINQDELETIFE 706

Query: 741 RFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI----PSK 791
            F    +    + G GLGLSI   F  L GG +++ S     +T  C I    P+K
Sbjct: 707 AFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLGQGSTFTCTIKMIMPTK 762


>gi|251796742|ref|YP_003011473.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
 gi|247544368|gb|ACT01387.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
          Length = 595

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 9/291 (3%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTE 557
           +I + +  R+   G +E    S+ + +   L NA           V   +  +A   L  
Sbjct: 305 VIPTMNKCREYEPGEIE-FCQSIADVTATALANAIHTEHLDYSVNVRSMELQQANFKLEG 363

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             + L   +E+K+ F+  +S+ELR+P+T + G  D+L+   LG LN  Q   +E    S 
Sbjct: 364 LVKELEYLNELKSDFIATLSHELRTPITAVKGTVDILRKEVLGKLNDSQLDLLETAGKSI 423

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GK 676
             LLN VN++LD A ++ G  +L YS     +L+ E    + + +++  + + V    G+
Sbjct: 424 ERLLNQVNELLDFAKMENGKFELMYSEFDFEELIREATHIVDSLINKKKLELAVEIHAGE 483

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             +  ADR+R+LQI   +LSN++ F+ +   + +KA  ++ +    V + G  IP +  K
Sbjct: 484 NRTMRADRERILQILLNLLSNSIKFTPQRGKITIKAYMEDNEMTIEVIDTGIGIPVEKQK 543

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           ++F +F    +  Q  G GLGL+I    I +HGG +S  S++   +     
Sbjct: 544 NIFTKFYQVNN--QINGTGLGLAISRQLIEMHGGKISFESTEGEGSVFKFT 592


>gi|227543740|ref|ZP_03973789.1| histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300908805|ref|ZP_07126268.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
 gi|227186308|gb|EEI66379.1| histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300894212|gb|EFK87570.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
          Length = 598

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 161/416 (38%), Gaps = 31/416 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   ++  +     + 
Sbjct: 187 EEMRKQTLRIARGDYSGQVKVLGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLDSILS 246

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N     L   E      G  I ++      Y           
Sbjct: 247 HMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDVLDIRHDYTVRQLVNGEQR 306

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +I    +   +L          +L     P+      ++ +         +        
Sbjct: 307 EMIIDMSNSGNNL----------ILNAYFSPIQRESGFVSGLVCVLHDVTSQQ------- 349

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L             ++++ +   +  ++
Sbjct: 350 --KEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAWQD-KEIAPKFLKVVQDETDRMI 406

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI------RIKVISDG 675
            ++ND+L L+ +DAG  KLN   + +N+L N +       + +          I+     
Sbjct: 407 RMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTK 466

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP    
Sbjct: 467 KDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDL 526

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF  V  A   ++ G GLGL+I +  IN+ GG + + S +   +T    +P
Sbjct: 527 GRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582



 Score = 38.0 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + + + +      IL +++  +   D+   +   N   ++L  ++        S  ++
Sbjct: 229 EAQESSDSERRRLDSILSHMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDV 288

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----G 410
           L+ +R    + + +N            +  E   D  +  N   L+   +   R      
Sbjct: 289 LD-IRHDYTVRQLVN-----------GEQREMIIDMSNSGNNLILNAYFSPIQRESGFVS 336

Query: 411 GTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
           G + +  ++T Q   E            +  T +      ++ LS+G
Sbjct: 337 GLVCVLHDVTSQQKEERERKQFVSNVSHELRTPLTSVRSYVEALSDG 383


>gi|152993487|ref|YP_001359208.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
 gi|151425348|dbj|BAF72851.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
          Length = 1065

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 126/238 (52%), Gaps = 12/238 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+E K+ F+ ++S+E+R+PL  I+GFT++L+++    LN +Q +++  I  SS  LL++
Sbjct: 410 QANEAKSLFLANMSHEIRTPLNGIVGFTEILRST---DLNDEQREFLSIIDKSSENLLSI 466

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVA 682
           +N+ILDL+ +++  +++        +      ++ A    E NI +    D  +      
Sbjct: 467 INNILDLSKIESNNIEIENVVFDAAEEFESAVETYAVGAAEKNIDLNFYMDPTINPKLKG 526

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCK 736
           D  ++ +I   +LSNA+ F+S G  V L+  +   +        FSV++NG  + +D  +
Sbjct: 527 DPTKIKEILINLLSNAIKFTSYGGEVNLEIHQVQDEDDRMPRIKFSVQDNGIGMTQDQQE 586

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F+ F         +  G GLGL+I   F+ L GG + + S+ +  TT    IP +E
Sbjct: 587 RIFDAFSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAKDQGTTFFFTIPFEE 644


>gi|124515848|gb|EAY57357.1| putative multi-sensor signal transduction histidine kinase
           [Leptospirillum rubarum]
          Length = 454

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 164/384 (42%), Gaps = 24/384 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           GT+ ++ +   + +   K+          +DH+ EGV V    G+I L N AF   +K E
Sbjct: 82  GTVRLYRD---REEASRKFKEATSRFSAVMDHMEEGVVVTDLKGKILLVNRAFFRFFKVE 138

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            +             +      ++   DL   ++ +    +K +  +    + +      
Sbjct: 139 GDVRG---------ESFGLLARKTGINDLIEDVLQNHRSVQKEVTFSETTPARTWSLVGT 189

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               + +T +  +           L      +R+ + I+  FV +VS+E+R+PLT+I GF
Sbjct: 190 TARGSGETDVFGIFF---------LLFDLTDIRQLERIRKDFVANVSHEIRTPLTSIRGF 240

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + L    +        ++   I + +  L N+V+D+L L+ ++ G   + Y ++ L+  
Sbjct: 241 AEALHDGGIND-PKTAREFSGIILSHAERLGNIVSDLLHLSELETGKAVMRYGSVSLSRQ 299

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +  ++   A    +  IR  V    +  ++  D  ++  +   ++ NA+ ++ +G  V  
Sbjct: 300 IAHIRDVYADHARKKGIRFTVQLPEETLTYETDEGKMDLVLGNLVDNALKYTPEGGEVFF 359

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
              ++    +F V+++G  IP      +F RF        R   G GLGLSIV   + + 
Sbjct: 360 GGWKEGDAIVFEVRDSGVGIPRTEVDRIFERFYRVDRARSREMGGTGLGLSIVRHILEIL 419

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
            G V ++SS    +T   R+PS+E
Sbjct: 420 QGTVRVTSSPGQGSTFFVRVPSRE 443



 Score = 41.5 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 7/143 (4%)

Query: 286 FGEAGIAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            G   +  D  +      +  +    ++ ++   + + D    +   NR+F   ++++  
Sbjct: 81  EGTVRLYRDREEASRKFKEATSRFSAVMDHMEEGVVVTDLKGKILLVNRAFFRFFKVEGD 140

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                  +  LL      N L E +  +  +     V  S  T   TW L  G T     
Sbjct: 141 ---VRGESFGLLARKTGINDLIEDV-LQNHRSVQKEVTFSETTPARTWSL-VGTTARGSG 195

Query: 405 TSNPRGGTIWMFENLTVQVDLET 427
                 G  ++  +LT    LE 
Sbjct: 196 E-TDVFGIFFLLFDLTDIRQLER 217


>gi|257062146|ref|YP_003140034.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8802]
 gi|256592312|gb|ACV03199.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8802]
          Length = 1166

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 126/678 (18%), Positives = 243/678 (35%), Gaps = 80/678 (11%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            +    +E +    + ++  +  +  K L      +V   D+ G +++ + + +K     G
Sbjct: 506  IKAYRNERSRQQAEKEREVSE-NKLKALLKYSSDIVSVFDEQGQLIYTSPAVEK---IYG 561

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-----GNNKSYKIVRVLNS 285
               ++   ++         +  + ++  +       +   H      N +   I  V ++
Sbjct: 562  FSPEELQNKNTFELIHPDDRSEVRNAFCQLLEDPKNTIRVHYRYQTKNQRFIWIETVASN 621

Query: 286  F-------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD------QNRYL 328
                    G    + D+S      + L  + E    L   I     + D        +  
Sbjct: 622  QLQNPNIQGIVVNSRDISHRKESEEALRVSEERFRQLAENIREVFWMIDVSTVNPTEQRT 681

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS-VYKSSET 387
             + + ++ ++W      L  NP         R   +     +++      F  +  +   
Sbjct: 682  LYVSPAYQQVWGHKPEELYENP---------RQWIQAVHPDDFERISHEFFDKLLITGFD 732

Query: 388  HKDTWHLPNGQTLHVIVTSNPRGGTIWMF-------ENLTVQVDLETKYNTLVKVQGE-- 438
            H+     P+G    +     P    +  F       E++T Q   E +   L     E  
Sbjct: 733  HEYRIIRPDGTIRWIRDRGFPIKNQVGEFCRVTGLAEDITKQKQTEEEIRGLNAALAEQN 792

Query: 439  ----------------TIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIR 481
                             ++ L + V V   D  ++   N  F             G  I 
Sbjct: 793  RQLEQRVAQRTAELEMLLNTLPDFVFVVERDTMKLSFCNQMFAQGIGFTNRSEVEGKTIF 852

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--- 538
                T    Y       +F +      +E+  L        D   +   +PL   Q    
Sbjct: 853  ECFPTEMANYFAQQNEQVFNSGEILHVEEKVCLPN-----GDRYFDTYKVPLRTPQGEIY 907

Query: 539  --MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              + T  ++T+ V  ++ L ++   L  A++  +SF   VS++LR+PL +I GF + LK 
Sbjct: 908  ALLGTGRDMTELVNTKKVLMQRTTQLELANQELDSFCYSVSHDLRAPLRHIHGFVNALKQ 967

Query: 597  SKLGS---LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
              + +    + K   Y++ I  SS  + +L++ +L L+ V  G  +L   T+ LN ++  
Sbjct: 968  QLMTNNTFEDPKVLHYLDVIENSSQKMAHLIDGLLTLSRV--GRRELVLHTVDLNAVVKT 1025

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                ++  +      IK    GKL +   D   L Q+F+ +L NA+ FS   + + +K  
Sbjct: 1026 AINLLSP-LENKTHTIKFEV-GKLPTVQGDNALLQQVFTNLLDNALKFSRDRNPISIKIN 1083

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  IF V +NG     +    +F  F     +    G G+GLSIV+  I+ HGGH+ 
Sbjct: 1084 TLEDGTIF-VSDNGVGFDMEYADQLFGAFQRLHSQATFPGTGIGLSIVQRIIHRHGGHIW 1142

Query: 774  ISSSDEGVTTINCRIPSK 791
              S  +  TT    +P K
Sbjct: 1143 AESQVDKGTTFYFTLPLK 1160



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 93/312 (29%), Gaps = 27/312 (8%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            Y + ++ N      I +   ++  + ++      IL  L       + +  +  +    
Sbjct: 47  WYSLKQLNNQLKNEIITLQQDQKFLLEEKREELQTILEILPDLFFRMNSDSTILDYRGES 106

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
                +        P  +           LPE +  + W++ I  +  S+      + L 
Sbjct: 107 KSELYVSPELFLGKPMIE----------ILPEPVA-QAWRDAIAQILGSNTLVTLEYQLS 155

Query: 396 NG---QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
                Q     +        I +  N++ Q   E             I++L   + V   
Sbjct: 156 TSNAEQYYEARLVPFAHQQIIAIVRNISQQKQTEINLKKSQDFLQTIINYLPVALFVKDG 215

Query: 453 D----GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                G++ L N A   +     +++   T      A  + +Y + D       +     
Sbjct: 216 KPEKFGQLLLVNKACEEMMGLVSSQVVGKTGHDLFPADQANFYEQKDREAFANGVPEDIP 275

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALR 563
           +E              +L    +PL +        +    ++T   +AE  L + +  LR
Sbjct: 276 EEPIDSYNA----GKKILHTIKVPLYDQNNDPEYLVCISEDITRQKKAEIDLEKSHNILR 331

Query: 564 KADEIKNSFVQH 575
                ++ F+  
Sbjct: 332 TISLAQSQFIAD 343


>gi|189912995|ref|YP_001964884.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|189913322|ref|YP_001964551.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167777671|gb|ABZ95971.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781390|gb|ABZ99687.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 664

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 105/529 (19%), Positives = 198/529 (37%), Gaps = 50/529 (9%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  + ++     +I       I  +  +  +   N    E ++I    +      D +++
Sbjct: 47  ERVIREKEKQYQDIYDTANSIIIRWSPDFRIHSVNPYAEEFFQIPKDQVEGK---DLVID 103

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ---TLHVIVTSNPRGG--- 411
             R   +   ++    W        ++     D +  P+ +   T    +  N  G    
Sbjct: 104 LFRIQFEKSNEIKSLLWN-IFHRPEQNIRQEFDVFVGPDDKRTVTWSNRILKNEFGYPYE 162

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +  ++T +   E       +   +  ++   G      D  +   N           
Sbjct: 163 VLSIGIDITNRKIAEENLMKSYERILDLYNNAPCGYHSLDKDNIVVSINDTELDWLGYSR 222

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSI 530
             +     I ++             ++ F  II SF  E    ++        S    S+
Sbjct: 223 EEIVGNFRINDLLT--------PSSFEKFEQIIKSFPHENLTGVELEFIRKDKSTFFVSL 274

Query: 531 IPLPNAQ-------TMLTFVNVTDSVRAE--------------RALTEKNEALRKADEIK 569
             +P          +  T  ++TD   AE              + L +  EA  KA++ K
Sbjct: 275 NSIPTFDKNGNFVISKSTVFDITDRKIAEDKLNDYSQKIQLQNKRLQKAVEAAIKANQSK 334

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F   +++ELR+PL  +IGF+ +L   K  +L      +V  +  +   LL ++NDILD
Sbjct: 335 SVFFSKITHELRTPLHAVIGFSQIL--GKDPNLPEHLKGFVNSLYENGVHLLGMINDILD 392

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRL 687
           L+ ++AG M  +     L  L + +    + +  E +I  ++I    +    F AD Q++
Sbjct: 393 LSKIEAGKMTESREKFSLVQLWDTLFSMFSYRFAEKHILFELIHPETIKNQYFEADLQKI 452

Query: 688 LQIFSKILSNAMDFSSKGST---VILKAARDNG-DFI-FSVKNNGSSIPEDMCKSVFNRF 742
            QI   +L NA+ F+++G     V +K   +   D + F VK+ G  IP+D   S+F  F
Sbjct: 453 RQILVNLLGNALKFTNQGFVNMEVKIKQGLEPNIDLVSFIVKDTGIGIPKDQLHSIFEAF 512

Query: 743 VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                      G GLGLSI    ++  GG + + S     +T    +P 
Sbjct: 513 QQTEQGSSYQEGTGLGLSISHQLVDFLGGTIQVDSDTNQGSTFIFELPL 561


>gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 916

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 149/317 (47%), Gaps = 11/317 (3%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           N+  + +R  N      L A    +  +E ++    L++  + +  ++       Q   +
Sbjct: 424 NVGISLNRIGNHMQVQKLLADS-QALTEELQTQSEELQMQQEELKTFN--EKLENQYKES 480

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +  +A+ AL E+   L  + + K+ F+ ++S+ELR+PL +++    +L  +K G+
Sbjct: 481 EQKTIELQKAKTALEEQASHLALSSQYKSEFLSNMSHELRTPLNSLLILARILVENKDGN 540

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ KQ +Y E I +S   LLNL+NDI DLA ++AG + +    I L +L+  +++     
Sbjct: 541 LSPKQVEYAETILSSGNDLLNLINDIFDLAKIEAGKLIVKPEQISLTELIYTLERQFQPI 600

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARD 715
             +  +   +  D  +  +F  D+ RL+QI   +LSNA  F+++G          K +  
Sbjct: 601 ARQKLLDFTIQLDNDIPKTFFTDKNRLMQILKNLLSNAFKFTNEGCVNLHVQRATKISEK 660

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
               +FSV + G  I +D    +F  F        R   G GLGLSI      L GG + 
Sbjct: 661 GTQIVFSVSDTGIGIAKDKQALIFEAFQQGDGTTSRKFGGTGLGLSICRELAGLLGGFIE 720

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +T +  IP+
Sbjct: 721 LQSIKGKGSTFSVYIPT 737


>gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 932

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 10/241 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A ++K+ F+ + S+E+R+PL  I+GF++LLK ++L  L   Q  Y+E I
Sbjct: 255 ELDIARKGAIQASKVKSEFLANTSHEIRTPLNGILGFSELLKKTELNPL---QEDYLETI 311

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++NDILD + ++ G + L Y  + L  +L E  +  A   HE  +R+  I 
Sbjct: 312 YESAKGLLTIINDILDFSRLETGKLTLEYKPVRLRQVLEEALRLQAPAAHEKKLRLLTIV 371

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
           D  +    + D  RL Q+ + +LSNA+ F++ G  +I  +  D  D      F + ++G 
Sbjct: 372 DHDIPEHLLGDPLRLKQVLTNLLSNAIKFTNVGHILISVSKEDRADNQITLQFRITDSGI 431

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + +D  + +F+ F     +      G GLGL+I +  ++   G + + S      T   
Sbjct: 432 GLNQDQQEKLFDAFTQLDASDSRTHGGTGLGLAIAKGLVDRMHGEIGVESEPGKGATFWF 491

Query: 787 R 787
            
Sbjct: 492 T 492


>gi|282933548|ref|ZP_06338918.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|297205338|ref|ZP_06922734.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
 gi|281302291|gb|EFA94523.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|297149916|gb|EFH30213.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
          Length = 620

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 157/403 (38%), Gaps = 33/403 (8%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKL 458
            V + SN   G +   F  L+++V+   + +   + +    + H+++GV      G + +
Sbjct: 228 QVKIYSNDELGQLAEAFNTLSIRVERSQEQSESERRRLDSVLSHMTDGVIATDRHGNVII 287

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N    S    +E   +    I  I         +    +    +IT   +E    +  L
Sbjct: 288 LNQMALSFLDIKEKD-AVSKPITKILGLDDDVSAQELIGNQQEMMITV--NEGTPDEMIL 344

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                    +S+I             + D    +           K +  +  FV +VS+
Sbjct: 345 HA------NFSLIRRVTGFVSGAVCVLHDVTEQQ-----------KNENEQRQFVSNVSH 387

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT++  + + L             Q++E     +  ++ ++ND+L L+ +D G++
Sbjct: 388 ELRTPLTSLRAYIEALNDGAWKD-PEIAPQFLEVTQEETERMIRMINDLLSLSRMDRGVV 446

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMH--------ENNIRIKVISDGKLGSFVADRQRLLQI 690
           K++   +  ND L+ V       +         +    IK     +      D  +++Q+
Sbjct: 447 KMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSIKRKITNQDLWVEIDTDQMMQV 506

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              I++NA+ +S  G  + +   +     I S+ + G  IP+     +F+RF        
Sbjct: 507 IDNIMNNAIKYSPDGGVITVGLTQSQNQIILSISDQGLGIPKKDLNKIFDRFYRVDKARS 566

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++ G GLGL+I +  +  H G +   S +   +T    +P +
Sbjct: 567 REQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYISLPFE 609


>gi|302342500|ref|YP_003807029.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639113|gb|ADK84435.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 591

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 93/394 (23%), Positives = 161/394 (40%), Gaps = 39/394 (9%)

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGET-IDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +  G     F+ +   +       T  + + E  +  + EGV V   DGR+ ++N A  +
Sbjct: 227 HEIGDLGRAFDRMADNMQARIDDITAARDRLEAMLRGMVEGVMVVDRDGRVMIANRALMT 286

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---FDDERKSLQGTLELLS 522
           L                I    S +    +  D    +         E ++L       +
Sbjct: 287 LLDLPSMP---------IGMQLSEFVRNPEVLDAIRQVRRGEGHVSTEFRTLS-----RA 332

Query: 523 DSVLEYSIIPLPN----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              LE  ++ LP+    A  +  F ++T+  R E              E++  FV +VS+
Sbjct: 333 PRFLEAQVVRLPDSAPQAGAVAVFHDLTERKRLE--------------EVRRDFVANVSH 378

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT I G ++ L    L +       +VE I+ +++ L  L  D+LDLA +++G  
Sbjct: 379 ELRTPLTAIRGSSETLLGGALEN-QHYAKHFVEMIARNASRLERLTQDLLDLAAMESGRE 437

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L    I    L + V  ++     E  + ++     +    +A R+ L Q    +L NA
Sbjct: 438 ELVKEAIDGASLADSVLATVGELAEERGVELERELPKESLRIMASRRHLEQAVLNLLDNA 497

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGL 756
           + ++  G  V L      G    SVK++G+ I  +    +F RF         Q  G GL
Sbjct: 498 IKYTESGGKVTLALTEAEGQTRISVKDSGAGIAPEHLGRIFERFYRADKDRSRQMGGTGL 557

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GL+IV+     HGG V + S+    +T    +P+
Sbjct: 558 GLAIVKHIAQKHGGRVEVESTPGQGSTFTLVLPA 591



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 25/158 (15%)

Query: 284 NSFGEAGIAIDV------SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  G+ G A D       ++   +         +L  +   + + D++  +   NR+ + 
Sbjct: 227 HEIGDLGRAFDRMADNMQARIDDITAARDRLEAMLRGMVEGVMVVDRDGRVMIANRALMT 286

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-----SETHKDTW 392
           L ++      + P   +L EF+R+   L      +  + ++ + +++             
Sbjct: 287 LLDLP-----SMPIGMQLSEFVRNPEVLDAIRQVRRGEGHVSTEFRTLSRAPRFLEAQVV 341

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
            LP+         S P+ G + +F +LT +  LE    
Sbjct: 342 RLPD---------SAPQAGAVAVFHDLTERKRLEEVRR 370


>gi|300702723|ref|YP_003744323.1| sensor protein [Ralstonia solanacearum CFBP2957]
 gi|299070384|emb|CBJ41679.1| Sensor protein [Ralstonia solanacearum CFBP2957]
          Length = 994

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 113/607 (18%), Positives = 225/607 (37%), Gaps = 37/607 (6%)

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           +    +W R     +L    +    T ++      A    R++            +    
Sbjct: 8   AAPAHLWWRAGTA-LLLCAAAITLLTASDYTQADDATRALRQMGPPPAPSASARMARCAP 66

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA 320
                + TL   + +  ++ R                E T+  QL   + ++ +L   +A
Sbjct: 67  AAAIVLWTLTMLSIRHMQLRREHRQR--------RHAEATLARQLDFQHMLMESLPFPLA 118

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
             D        N +F  L+      +         L   R+A ++ + ++ +       +
Sbjct: 119 AQDAQHRYVAVNTAFCHLFGRPREAVLGRTPAHLGLACTRTAARV-QDIDRRAAAAGQDT 177

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQG 437
             + +    D           V     P G   GTI    +++   + + +     +   
Sbjct: 178 REELTIMAADGSERC--VLYWVAPLRQPDGQPAGTIASLIDVSEIREAQARAERQAQHLH 235

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR-NIAATCSRYYNESDG 496
            +I+ L   V  F  + R   +    R +  +    L   T     +  + +R  ++ D 
Sbjct: 236 GSIESLPALVCQF--EMRPGTARSRMRYVAGSARETLGVQTGAAPFLLPSPARLVHQDDH 293

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSD----SVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
             +  A + S   +   L      + D      L     P   +     +      +  E
Sbjct: 294 RRMHEAALQSAM-QLTPLDQPFRHVGDDGSVRWLHAHARPRRESDGRTVWTGYLRDITQE 352

Query: 553 RALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           RA  +  E  R+A E     K+ F+  +S+E+R+P+  ++G     +      L  +Q +
Sbjct: 353 RARADAQETARQAAESALHAKDRFLATMSHEIRTPMNGVLGLV---ELLLQTPLEREQQR 409

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  +  SS  LL++++DILD A ++AG + +  +   L +L +     +A++ HE ++ 
Sbjct: 410 MVTLMQESSRALLHILDDILDYAKIEAGHLSVTPTQTDLRELFDSTVGLLASRAHERSLS 469

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSV 723
           ++V  D  +  +   D  RL Q+ S +LSNA+ F+ +GS  +    +  A D    I  +
Sbjct: 470 VRVEVDATVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACVGTAADTAHLIIRI 529

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I  +   ++F  FV   +    +  G GLGL+I      L GG + + S     
Sbjct: 530 ADTGIGIAPEAQATLFTPFVQADNPAARRHGGTGLGLAISRQLARLMGGSLDMDSKPGVG 589

Query: 782 TTINCRI 788
           TT+  R+
Sbjct: 590 TTLTLRL 596



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/494 (12%), Positives = 137/494 (27%), Gaps = 46/494 (9%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           L    Y +   AT  LR+ G      A  +          V  +   L I  +  +  E 
Sbjct: 31  LTASDYTQADDATRALRQMGPPPAPSASARMARCAPAAAIVLWTLTMLSIRHMQ-LRREH 89

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQKA 236
            +       L+  +    +L +SL F +  +D     +  N ++        E ++ +  
Sbjct: 90  RQRRHAEATLARQLDFQHMLMESLPFPLAAQDAQHRYVAVNTAFCHLFGRPREAVLGRTP 149

Query: 237 IGESRKLFKEEIK----KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-----NSFG 287
                   +   +     R  +++  +     T+   +         V  L        G
Sbjct: 150 AHLGLACTRTAARVQDIDRRAAAAGQDTREELTIMAADGSERCVLYWVAPLRQPDGQPAG 209

Query: 288 EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFD-----QNRYLQFHNRSFVEL 338
                IDVS+    +     Q  H +  + +L   +  F+         +++   S  E 
Sbjct: 210 TIASLIDVSEIREAQARAERQAQHLHGSIESLPALVCQFEMRPGTARSRMRYVAGSARET 269

Query: 339 WEID---LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             +      FL  +P+    L       ++ E        ++   +    +  +      
Sbjct: 270 LGVQTGAAPFLLPSPAR---LVHQDDHRRMHE-----AALQSAMQLTPLDQPFRHVGDDG 321

Query: 396 NGQTLHVIVTSN--PRGGTIWM--FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           + + LH          G T+W     ++T +        T  +     + H  +      
Sbjct: 322 SVRWLHAHARPRRESDGRTVWTGYLRDITQERARADAQETARQAAESAL-HAKDRFLATM 380

Query: 452 PDGRIKLSNPAFRSLWKTEENRLS---------PGTHIRNIAATCSRYYNESDGWDLFAA 502
                   N     +    +  L               R +        + +       +
Sbjct: 381 SHEIRTPMNGVLGLVELLLQTPLEREQQRMVTLMQESSRALLHILDDILDYAKIEAGHLS 440

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +  +  D R+    T+ LL+    E S+         +      D +R  + L+      
Sbjct: 441 VTPTQTDLRELFDSTVGLLASRAHERSLSVRVEVDATVPATVSVDGMRLRQVLSNLLSNA 500

Query: 563 RKADEIKNSFVQHV 576
            K  E  +  +   
Sbjct: 501 IKFTERGSVHLSAA 514


>gi|303239891|ref|ZP_07326414.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592601|gb|EFL62326.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 587

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 175/394 (44%), Gaps = 25/394 (6%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            +++TSN   G + + F  +  +++      N         +++++ G+     + +I L
Sbjct: 215 RILLTSNDELGQLALQFNEMASKLEKTIFNLNNKKVEVESIVENITYGIVAVDSNNKIIL 274

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA   ++  ++N           A   S   +     +    I+    ++   L+  +
Sbjct: 275 INPAAFDVFNMDKN-----------AKVTSDILSAHIRNNRLNLILKESVEQNSPLESEI 323

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               + VL     P+      L+      S++           +RK ++++  FV +V++
Sbjct: 324 -TFDEKVLLIKTSPIRPKNDSLSNSGWIISIQ-------DITKIRKLEQLRTEFVSNVTH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+T+I GF + LK+  +   +  +  +++ I   +  L  L+NDIL L+ ++  + 
Sbjct: 376 ELKTPITSIRGFIETLKSGAINKPDVSER-FLDIIDIEAERLHELINDILSLSEIENKLS 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
             +  +  L  +++ V + +     E N+ +    D K+    A+R R+ Q+   ++ NA
Sbjct: 435 DTDLESFSLKSIIDGVFEVMENIAIEKNVLLNNTVDEKIL-IKANRNRMKQLVLNLVDNA 493

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + ++    +V + A R  G  + SVK+ G  IP D    +F RF            G GL
Sbjct: 494 IKYNIPTGSVTVDAQRVGGKVVISVKDTGIGIPPDHIPRIFERFYRVDKGRSRDMGGTGL 553

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLSIV+  +NL+ G + +SS     T    ++P+
Sbjct: 554 GLSIVKHIVNLYNGDIKVSSEVGKGTEFIIQLPT 587



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +N++      I+ N+T  I   D N  +   N +  +++ +D     T+      +   
Sbjct: 244 NLNNKKVEVESIVENITYGIVAVDSNNKIILINPAAFDVFNMDKNAKVTSDILSAHIRNN 303

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           R    L E +          S  +S  T  +   L     +     S    G I   +++
Sbjct: 304 RLNLILKESVEQN-------SPLESEITFDEKVLLIKTSPIRPKNDSLSNSGWIISIQDI 356

Query: 420 TVQVDLET 427
           T    LE 
Sbjct: 357 TKIRKLEQ 364


>gi|302337012|ref|YP_003802218.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301634197|gb|ADK79624.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 944

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 127/659 (19%), Positives = 251/659 (38%), Gaps = 69/659 (10%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EI 248
            IS  +   + +   V+  +  G I   N    + T  +       I  S  L  E   +
Sbjct: 2   DISRIEKFIEYVPDAVFIIEPDGMIAALNKRALRLTGLDSTAL-IGISFSDLLLPEHVSL 60

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG--------------EAGIAID 294
            KR+  S     +    ++T+  G  + +++   L + G              E G  ++
Sbjct: 61  LKRLYLSGESSSDIQGRMNTVLLG-REGHRVHVNLRAQGFRDQMFSGYMVVCREVGHHLE 119

Query: 295 VSKEITVNDQLTHTYEILHNLTVAI-AIFDQNRYLQFHNRSFVEL-------WEIDLAFL 346
           + ++ ++   L      + N+  A+  + D    +   +   + L       W++  +F+
Sbjct: 120 LERQRSLQHDLAMALVGIQNIEEAVNLVLDTGLKISECDGGALFLRGAENGRWKLS-SFI 178

Query: 347 ATNPSNDELLEFLRSANKLPEQ-LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                    L F+   N+LP+    W  + E       S         +    T+ VI  
Sbjct: 179 NIEEEEITSLSFVEELNRLPDGIRQWIVFGERGSDAVLSPPPAMRRLGIRFAMTIPVISE 238

Query: 406 SNPRGGTIWMFEN----------------------LTVQVDLETKYNTLVKVQGETIDHL 443
           + P G  ++ F +                      L  ++  E K+ ++       I  +
Sbjct: 239 TKP-GAVLFFFSHQAKQMDVEARRSLEIIASQFGSLVARLHSERKFRSVEGFGRSLIKSM 297

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-A 502
             G+     DG I   N A   L   + + +     + +         N  + +D     
Sbjct: 298 PSGLITRNRDGIITHFNLAAEQLLGIKGDTVIGKRDLPDALFFFDEKGNIIEHFDAPTFL 357

Query: 503 IITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALT 556
           ++ S    R  L   +    S   L  +  PL          ++T  +V+D +R    L 
Sbjct: 358 VLESGKPLRNVLVRAIRPDGSTVWLSVNGEPLFGKDEEPVAAVITMKDVSDHLRLVDELE 417

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  +    A + K+ F+ ++S+E+R+PL+ I+G TDLL +   G L   Q + +  +  +
Sbjct: 418 QARQMAVTASDSKSRFLANISHEIRTPLSGIMGMTDLLLS---GPLTEDQRENLFLMKEA 474

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
             +LL+++N +L+++ +++G + L      L   +N+    I     E  I + +     
Sbjct: 475 EELLLDIINKVLEISKIESGKLSLELEPFRLRGAINKAALPIFMGCKEKGIVLDIDVSPS 534

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI--FSVKNNGSSI 730
           +    + D  RL Q+ +  LSNA+ F+  G+   TV+  +  +NG     FSVK+ G  I
Sbjct: 535 IPDRLIGDGSRLTQVLTNFLSNALKFTESGTITLTVVETSRNENGKIELFFSVKDTGIGI 594

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           P D   ++F+ F         + +G GLGL+I +  + L  G + + S     +     
Sbjct: 595 PSDAQTTIFDDFRQIDSGPAKRHQGTGLGLAISKKLVELMDGSIGVESEGGQGSRFFFS 653


>gi|193084072|gb|ACF09742.1| integral membrane sensor signal transduction histidine kinase
           [uncultured marine group III euryarchaeote AD1000-40-D7]
          Length = 752

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 80/322 (24%), Positives = 140/322 (43%), Gaps = 9/322 (2%)

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           N L       +I    + + + SD  DL    I  + +E   L   +   +D   E   I
Sbjct: 429 NPLRVSQEAEDIGLNIAEHDSSSDQIDLLK--IMQYQNETGDLS--VRGPADIFTEAGQI 484

Query: 532 PLPNAQTMLTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                  M +       +R ++  L    +  + A++ K+ F+ ++S+ELR+PL  IIG+
Sbjct: 485 GHHYNILMNSLEESDKIMRKQKDDLKIAMQKAQTANQAKSDFLANMSHELRTPLNAIIGY 544

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +++L            S+ +  I++S   LL L+NDILDL+ ++AG M L+       +L
Sbjct: 545 SEMLIEEADDDGLDTYSEDLSKINSSGEHLLTLINDILDLSKIEAGKMDLHIEEFDFAEL 604

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L +++ +    + +N  +  +    K      D+ +L QI   +LSNA  F+ +G  V L
Sbjct: 605 LKQIEATAKPLVEKNKNKFIIKCQTKKLKLKNDQTKLRQILFNMLSNAAKFTKEG-MVTL 663

Query: 711 KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINL 767
           +   +      F V + G  +     + VF  F            G GLGL I +    +
Sbjct: 664 QINPEKKNHLKFEVLDTGIGMNGKQLEKVFEEFTQAKSSTSKDYGGTGLGLPISKKMTEM 723

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG + + S +   TT +  IP
Sbjct: 724 MGGRMGVESKEGKGTTFSIIIP 745


>gi|94265927|ref|ZP_01289653.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453513|gb|EAT03921.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 116/262 (44%), Gaps = 12/262 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M    +      A     E     + A+  K+ F+ ++S+E+R+P+  +IG   LL    
Sbjct: 136 MELMESNRRLGEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAE- 194

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q  Y + I +S   LL L+N ILD + ++AG ++L++      +L+ EV   +
Sbjct: 195 --DLSDEQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDHRPFSPRELVEEVAVLL 252

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST------VILK 711
             +    NI +       + + V  D  RL Q+   ++ NA+ F+  G            
Sbjct: 253 RPQAAAQNIALTSEVSPDIPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAMELSPAPAD 312

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            A  +    F+VK++G  IP +    +F RF         +  G GLGL+I    + L G
Sbjct: 313 PAAPHCSLHFAVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLVELMG 372

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + + S +   +T    +P +
Sbjct: 373 GEIGVESEEGKGSTFWFTVPLR 394


>gi|229014631|ref|ZP_04171745.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
 gi|228746642|gb|EEL96531.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
          Length = 611

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 149/392 (38%), Gaps = 27/392 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 233 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 292

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 293 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 345

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            ++ +  FV +VS+E
Sbjct: 346 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IEQERREFVANVSHE 391

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 392 LRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 450

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 451 LMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNAL 509

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 510 KYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 569

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  I  HGG V   S +   TTI   +P
Sbjct: 570 LAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 601


>gi|217037907|gb|ACJ76425.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 927

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 174/393 (44%), Gaps = 30/393 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + LT++ +L        K+     ++  + + +    GR+   N ++ +L       +
Sbjct: 249 LIKTLTIKRELIRSEKEKAKLALVA-EYAHDAIFILDKQGRLTWINQSYSALSGNTLEDI 307

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIIT----SFDDERKSLQGTLELLSDSVLEYSI 530
             G  + +I          ++   L  ++ T    SF+       GTL       ++ SI
Sbjct: 308 E-GKDLPSILQL--DKIKHANIIILLQSLETGTSISFELTNHHKDGTL-----FWIDVSI 359

Query: 531 IPL--PNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P+  PN   M       ++T     E  L +       ++  K++F+  +S+ELR+PL 
Sbjct: 360 TPILEPNGNIMHYIAVERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLN 419

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G   +++++     + +Q + ++ +  S   LL L+N+ILD + ++   ++LN+++ 
Sbjct: 420 GILGMAQIIESNIK---DKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASF 476

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              D++  +  +  +      ++  + +       F+ D+ R+ QI   ++SNA+ F+ +
Sbjct: 477 YFVDIIEPITNTYLSVCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHE 536

Query: 705 GSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
           GS + L        +        +K+ G  I E+  K +F  ++       R   G GLG
Sbjct: 537 GS-ITLNFSHTLTGKGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLG 595

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+IV+   ++  G++S+SSS+   +     +P 
Sbjct: 596 LAIVKQLTDIMRGYISVSSSEGKGSCFTLVLPL 628


>gi|289432115|ref|YP_003461988.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
           sp. GT]
 gi|288945835|gb|ADC73532.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
           sp. GT]
          Length = 581

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 149/376 (39%), Gaps = 26/376 (6%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +T ++       ++        ++ + +G+ +   +G I L N A   ++K E   +
Sbjct: 230 FRLMTERLRDSIKAVSSERDYLSAVLERMGDGIFLLDREGSINLLNHASERIFKLEAGGV 289

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  I         + +   +F    +S   E   ++ T        L     PL 
Sbjct: 290 IGHSFVEAI--------RDHEINAVFERAKSSGKQEMGFVELT---AGKRFLGIIATPLV 338

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +    L              L +    LR+ ++++  FV ++S+ELR+P+T++   T+ L
Sbjct: 339 SQSGYLV-------------LVQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETL 385

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +       +   + +++ I      L  LV ++ DL+ +++G   LN     +   +   
Sbjct: 386 QEGAASDPDV-AAGFIDKIHLEVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLA 444

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + ++ +     I + V     L     D  R+ Q+   ++ NA+ F+ KG  + +    
Sbjct: 445 AERLSPQAERAGITLGVELPETLPQVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGVRT 504

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +   +  V ++G  IPED    VF RF          G GLGL+I +  +  HGG +  
Sbjct: 505 QSQTLVVYVTDSGIGIPEDDLTRVFERFYKVDKSRSGGGTGLGLAISKHIVQAHGGSIWA 564

Query: 775 SSSDEGVTTINCRIPS 790
            S      T +  +P 
Sbjct: 565 ESVYGKGATFSFSLPL 580



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 30/169 (17%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V+ +  +   +L  +   I + D+   +   N +   +++++   +  +      +E 
Sbjct: 242 KAVSSERDYLSAVLERMGDGIFLLDREGSINLLNHASERIFKLEAGGVIGH----SFVEA 297

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSN-PRGGTIWM 415
           +R                 +F   KSS   +  +       + L +I T    + G + +
Sbjct: 298 IRDHEI-----------NAVFERAKSSGKQEMGFVELTAGKRFLGIIATPLVSQSGYLVL 346

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPD 453
            ++L+    LE            +  T +       + L EG A   PD
Sbjct: 347 VQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEG-AASDPD 394


>gi|298387810|ref|ZP_06997360.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259415|gb|EFI02289.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 391

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 186/384 (48%), Gaps = 27/384 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE----ENRLSPGTHIRN 482
            K      +    + ++   + +   D ++  +N  +  L  T+    E R+      RN
Sbjct: 10  RKLEHTNHIASAILKNVHAYILLIDNDFKVLKTN--YYQLTGTQKGLEEKRVGDLLQCRN 67

Query: 483 I--AATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLS--------DSVLEYSI 530
              A      +       +  AI  +F+  R    L+ TL +L+        D+V+  S 
Sbjct: 68  ALSAEGGCGTHAYCGSCPIRCAIRQAFEQRRGFTDLEATLNVLTSEKKSVECDAVISGSY 127

Query: 531 IPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             L   + M+ T  ++T     E+ LT   E    AD  K++F+ ++S+E+R+PL  I G
Sbjct: 128 FLLNEEENMVLTVHDITQLKETEKQLTLAKEKAENADLSKSAFLANMSHEIRTPLNAITG 187

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F ++L +    +   +++QY E I  ++ +LL LVNDILD++ ++AG ++  Y+ + +N 
Sbjct: 188 FAEVLAS---ANTEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINL 244

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGST 707
           LL++++Q    ++++    I++I++  L   S   DR R+ Q+ S   +NA+ F+ +G T
Sbjct: 245 LLSDLRQLFQMRVNDAGKNIRIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEG-T 303

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           + +     + +  F V + G+ IP D    VF RFV       ++G GLGLSI ++ +N 
Sbjct: 304 ISIGYEARDTELYFYVTDTGAGIPADKLPEVFGRFVKL--NKDKKGTGLGLSISKTIVNK 361

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
             G +   S +   +T    IP +
Sbjct: 362 LEGQIGADSVEGKGSTFWFTIPYR 385


>gi|255692100|ref|ZP_05415775.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622252|gb|EEX45123.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 624

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 207/509 (40%), Gaps = 28/509 (5%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--LAFLATNP-S 351
            S    +       + I  +L V I +++++  L   N    E++ ++     L  +   
Sbjct: 122 TSAYQALQHSERILHNIYKHLPVGIELYNEDGILIDLNDKEQEMFHLEKKEDLLGLDIFK 181

Query: 352 NDELLEFLRSANKLPEQLNWKTWKE--NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           N    E ++   +  E  ++    +   I S YK+S+       +    TL      NP 
Sbjct: 182 NPMFPEEMKERLRRNEDADFTFRYDFSKIGSYYKNSKREGTIDLVTKVTTL-YDDEGNPI 240

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              + +  + T       K     +      D+   G A         L+   +      
Sbjct: 241 NY-LLINADKTETTIAYNKIQEFEEFFELVGDYAKVGYAHLN-----LLTGEGYAQKSWY 294

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGW------DLFAAIITSFDDERKSLQ--GTLELL 521
                + GT + +I       + +          D+   +      E + L+  G     
Sbjct: 295 RNIGEADGTPLSDIIGIYRHLHPDDRNCMVQFFEDVRNGLTAKLSKEVRVLRSNGEYTWT 354

Query: 522 SDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
             ++L    IP     + +    ++T+  + E  L +  +    +D +K++F+ ++S+E+
Sbjct: 355 HVNLLVRKYIPQDKIIELISINYDITELKKTEEMLVKARDKAEASDRLKSAFLANMSHEI 414

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+ LL  ++     +++  Y   IS ++ +LL L+ND+LDL+ +++G ++L
Sbjct: 415 RTPLNAIVGFSALLAATEDM---AEKELYNSLISHNNELLLELINDVLDLSKLESGYLEL 471

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           + S   L +LL+E       ++    + ++     +      DR R+ QI +  LSNA+ 
Sbjct: 472 HPSWFNLAELLDESVAEYTRQLAA-GVELRTHYLDQGFLVELDRLRIKQILNNFLSNALK 530

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            ++ G  V +    D+      V++ G  IP++M + +F RF       Q  G GLGL I
Sbjct: 531 NTTSG-YVEVFYEIDSSYVRIGVRDTGRGIPQNMLEKIFERFEKVDSFTQ--GAGLGLPI 587

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +S ++   G +   S     TT    +P
Sbjct: 588 CKSIVDKMNGRIWADSQLGIGTTFMVELP 616


>gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1444

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/510 (19%), Positives = 189/510 (37%), Gaps = 46/510 (9%)

Query: 306 THTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
               E+  +L  A   F     ++   +F +     +  +  A L  +P        LR 
Sbjct: 444 QLLREMADSLPCATFRFEVVPGRSPAFRFVSAQVARILGVTAAELMNDPG-------LRL 496

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT------LHVIVTSNPRGGTIW- 414
            N  P+  + +  +          +     + +  G T         +V+ +  G  +W 
Sbjct: 497 KNLHPD--DLEPARIAQAEAIDRGQPTNLLYRVVLGNTAPRWIETRSMVSESFDGTRVWN 554

Query: 415 -MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             + ++T + +   +     +      D +   V      G +      F  + +     
Sbjct: 555 GYWLDVTEREEALARIRMAEERLRALTDSVPVAVFEMRSQGDLFW----FTFISRKVREI 610

Query: 474 LSPGTHIRNIAATCSRYYN--ESDGWDLFAAIITSFDDERKSLQGTLELLS---DSVLEY 528
           L  G     + A   R Y    +   D     + +          +  L S   +  +  
Sbjct: 611 LGIGR--DELRANAGRLYGTVAAADRDGLEESVVAAIGGGLHFSASFRLDSPGDERWIRM 668

Query: 529 SIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             +P+P  Q    +     ++T   +AE  LT   E    A  +K+ F+ ++S+E+R+P+
Sbjct: 669 EAVPIPGEQGDRVWAGFFQDITAVKQAEAELTRAKELAEDATRMKSDFLANMSHEIRTPM 728

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG + L   +    L  +Q  YV+ I  +   LL ++NDILD + ++AG + + +  
Sbjct: 729 NAIIGMSHL---TLKTPLTPRQHDYVKKIQGAGQHLLGIINDILDFSKIEAGKLTVEHIG 785

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
             L+ +L+ +   +  K +  N+ +       +  + V D  RL QI     +NA+ F+ 
Sbjct: 786 FDLDKVLDNIASLLTEKTNAKNLELVFDVPSDVPRALVGDSLRLGQILINYANNAVKFTE 845

Query: 704 KGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
           KG   +I++            F+V++ G  I  +    +F  F        R   G GLG
Sbjct: 846 KGEIDIIVRVQERTQTEVVLYFAVRDTGIGITPEQKARLFQSFEQADTSTTRKFGGTGLG 905

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCR 787
           L+I +    L  G V + S     +T    
Sbjct: 906 LAISKKLAELMDGAVGVESEYGKGSTFWFT 935



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 104/329 (31%), Gaps = 44/329 (13%)

Query: 30  IAGMLLTTIIPIILLIRQ--RNSLAKKVNETYSFLSEICDQLSKYHSLL-----TENNCL 82
           +A       I  +   ++  R +L    +      + +  ++S+    L           
Sbjct: 384 VAVASDLAEISALATAQEAMRQALLASTSRLEEANATLEARVSERTWELEQSKGAAEWSR 443

Query: 83  TIVWDGKDETP-------EIIGQLHQRIDIPQTDTDLL---------SFENWLKFHHYIK 126
            ++ +  D  P        + G+      +      +L              LK  H   
Sbjct: 444 QLLREMADSLPCATFRFEVVPGRSPAFRFVSAQVARILGVTAAELMNDPGLRLKNLHPDD 503

Query: 127 LSKA---TEKLRKEGQS----FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
           L  A     +    GQ     + +V        I+    VS S    R+   +G + ++ 
Sbjct: 504 LEPARIAQAEAIDRGQPTNLLYRVVLGNTAPRWIETRSMVSESFDGTRVW--NGYWLDVT 561

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           E      ++       + L DS+   V+     GD+ W     +K  E  GI   +    
Sbjct: 562 EREEALARIRMAEERLRALTDSVPVAVFEMRSQGDLFWFTFISRKVREILGIGRDELRAN 621

Query: 240 SRKLFK-------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-----G 287
           + +L+        + +++ ++++     +F  +      G+ +  ++  V          
Sbjct: 622 AGRLYGTVAAADRDGLEESVVAAIGGGLHFSASFRLDSPGDERWIRMEAVPIPGEQGDRV 681

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLT 316
            AG   D++       +LT   E+  + T
Sbjct: 682 WAGFFQDITAVKQAEAELTRAKELAEDAT 710


>gi|126658583|ref|ZP_01729730.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126620170|gb|EAZ90892.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 1195

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 157/366 (42%), Gaps = 27/366 (7%)

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-------GTHIRNIAATCSRYYNESDGW 497
           +G+  +     +   +P +  +   E   L           H  ++        N   G 
Sbjct: 588 DGIWDWDLRNDMVYYSPVWMKILGYEHESLPHVLSTWSDHIHPDDLELAIQDVKNHLQGN 647

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
                 I             +E     + +    P    + + T  ++T+  + + AL +
Sbjct: 648 TTIYTNIHRIQHH-NGHYIWIEAKGKCIRDQQGKPY---RLVGTITDITERKKYQEALEK 703

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E    A+  K+ F+ ++S+E+R+P+  I+GF DLL        + +  +Y+E I+++ 
Sbjct: 704 AKETAEIANNAKSEFLANMSHEIRTPMNAILGFCDLLDKKVN---DERSRRYLESITSAG 760

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +LL+L+NDILDL+ ++AG +K+ Y +I L +++ E+KQ  A    +  + + +  D  +
Sbjct: 761 KMLLSLINDILDLSKIEAGKIKIIYKSIQLKEVIFEIKQMFAETAKQKQLELLIDIDDNV 820

Query: 678 GSFVA-DRQRLLQIFSKILSNAMDFSSKGST-VILKA---ARDNGD------FIFSVKNN 726
              +  D  RL QI   ++ NA+ F+ +G   + LK+     DN           S+++ 
Sbjct: 821 PDVIIFDEVRLKQILFNLVGNALKFTEEGYIKITLKSTLFKSDNHQKFSHCSLKISIEDT 880

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ED  + +F+ F  +      +  G GLGL+I +    +  G + + S     +  
Sbjct: 881 GIGIAEDQQERIFDVFTQSEGQSSRKYGGTGLGLTITKRLTEILEGTIDLDSQLGKGSIF 940

Query: 785 NCRIPS 790
               P 
Sbjct: 941 ILSFPK 946


>gi|163853614|ref|YP_001641657.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665219|gb|ABY32586.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 792

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 196/496 (39%), Gaps = 29/496 (5%)

Query: 312 LHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             NL  A+     I + +  L ++NR + +      A +A +              KL  
Sbjct: 18  FRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEMADH-----------GWRKLHH 66

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNP----RGGTIWMF---EN 418
             + +   E   S   + E+ +DT+ L   +G+    +  + P     G  +  +    +
Sbjct: 67  PDHLERAAERFASCIAAGESWQDTFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNTD 126

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T     +       +     +D  +  +      G +    P++ +     +       
Sbjct: 127 VTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGWG 186

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            I  I         E     +    +   +   +        +    +          + 
Sbjct: 187 WIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSIREW 246

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +++T    AE A+     A   A+  K+ F+ ++S+ELR+PL+ +IG++++L    
Sbjct: 247 VGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSEMLGEEL 306

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                ++    +  I +S+  LL L+ND+LD++ ++AG + L   T  +  L+ +V  + 
Sbjct: 307 EDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGRLTLAAETFDVVSLIEDVTAAT 366

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG 717
            + + +   R ++  +G LG+   D+ +L Q    ++ NA  FS  G  ++ ++  R+ G
Sbjct: 367 QSLITKKRNRFRLDFEGDLGAMHQDQLKLRQSLINLIGNAAKFSEDGEIILGVRRLREGG 426

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                FSV + G  + ++    +F RF        R   G GLGL+I  +F+   GG + 
Sbjct: 427 ADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFVERMGGTIG 486

Query: 774 ISSSDEGVTTINCRIP 789
           + S+     T   R+P
Sbjct: 487 VESTFGEGATFTIRLP 502



 Score = 58.0 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 85/249 (34%), Gaps = 23/249 (9%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK--EEIK 249
           ++ F+ L D+L  L W  +  G ++W N  +   T T                   E   
Sbjct: 15  MADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEMADHGWRKLHHPDHLERAA 74

Query: 250 KRMISSSALEKNFCETVSTL-EHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVN 302
           +R  S  A  +++ +T     + G  + +      V N+ G      G   DV++     
Sbjct: 75  ERFASCIAAGESWQDTFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNTDVTETRLAQ 134

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE------LL 356
           D L H+ +         A+ D +  + +   +  EL     ++ A    +DE       +
Sbjct: 135 DALGHSEQRFR------ALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGWGWI 188

Query: 357 EFLR--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           + +      ++ E       +  +F V      H + W     + + V+         + 
Sbjct: 189 DAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSIREWVG 248

Query: 415 MFENLTVQV 423
           +  ++T + 
Sbjct: 249 LNIDITARK 257


>gi|260584311|ref|ZP_05852058.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC
           700633]
 gi|260157829|gb|EEW92898.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC
           700633]
          Length = 616

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 89/417 (21%), Positives = 175/417 (41%), Gaps = 36/417 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQV-DLETKYNTLVKVQGETID 441
           +E  K T  +  G  T  V + S+   G +     +L+ ++ + +    +  +     + 
Sbjct: 213 AEMKKQTEKIAEGNYTGEVKIYSDDEIGQLGQAINDLSFKIKEAQESTESERQRLDSVLR 272

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      GRI + N A   +   +  ++  G  + +I              D   
Sbjct: 273 HMSDGVIATDRRGRIVIMNTAALDILNLKSEKV-IGIPLLSILPL-----------DEKV 320

Query: 502 AIITSFDDERKSLQGTLELLSDSVL--EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                 + +++ L    E   DS++  E+S+I   +         +TD    +       
Sbjct: 321 TFRELLETQQERLIHLEEDGEDSIIQCEFSVIQRESGFISGLVCVLTDVTEQQ------- 373

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               K D  + +FV +VS+ELR+PLT+I  +T+ L      +       +++ I   +  
Sbjct: 374 ----KIDRERRNFVSNVSHELRTPLTSIKSYTEALVDGAWEN-KEIAPGFLKVIETETDR 428

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-----ENNIRIKVISD 674
           ++ ++ D+L+L+ +D   + L    I +N+L+  +       +      E N RI     
Sbjct: 429 MMRMITDLLNLSRMDQNRLGLEKEFINMNELVLHIVNRFEMVLQSEPYREKNYRILTDIT 488

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D+ ++ Q+   I++NA+ +S  G  +I++    + D I SV + G  I    
Sbjct: 489 QRDLWVELDQDKITQVLDNIINNAIKYSPDGGRIIVRLMETHTDIIVSVSDEGLGIARKD 548

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF        R   G GLGL+I +  + LHGG + ++S +   +T    +P
Sbjct: 549 IPHLFDRFYRVDKARSRAMGGSGLGLAIAQEVVQLHGGKIWVNSIENKGSTFFVSLP 605



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 53/153 (34%), Gaps = 15/153 (9%)

Query: 284 NSFGEAGIAIDV------SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  G+ G AI+         + +   +      +L +++  +   D+   +   N + ++
Sbjct: 237 DEIGQLGQAINDLSFKIKEAQESTESERQRLDSVLRHMSDGVIATDRRGRIVIMNTAALD 296

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           +  +    +   P    LL  L    K+  +   +T +E +  + +  E           
Sbjct: 297 ILNLKSEKVIGIP----LLSILPLDEKVTFRELLETQQERLIHLEEDGEDSIIQCEFSV- 351

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
               +   S    G + +  ++T Q  ++ +  
Sbjct: 352 ----IQRESGFISGLVCVLTDVTEQQKIDRERR 380


>gi|260664970|ref|ZP_05865820.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561024|gb|EEX26998.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii SJ-7A-US]
          Length = 618

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 156/404 (38%), Gaps = 34/404 (8%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKL 458
            V + SN   G +   F  L+++V+   + +   + +    + H+++GV      G + +
Sbjct: 225 QVKIYSNDELGQLAEAFNTLSIRVERSQEQSESERRRLDSVLSHMTDGVIATDRHGNVII 284

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N    S    +E   +    I  I         +    +    +IT  +          
Sbjct: 285 LNQMALSFLDIKEKE-AVNKPITKILGLADDVSAQELIGNQQEMMITVNEG--------- 334

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               + +L  S   +      ++          E+          K +  +  FV +VS+
Sbjct: 335 -TPDEMILHASFSLIRRVTGFVSGAVCVLHDVTEQQ---------KNENEQRQFVSNVSH 384

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT++  + + L             Q++E     +  ++ ++ND+L L+ +D G+ 
Sbjct: 385 ELRTPLTSLRAYIEALNDGAWKD-PEIAPQFLEVTQEETERMIRMINDLLSLSRMDRGVA 443

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMH---------ENNIRIKVISDGKLGSFVADRQRLLQ 689
           K++   +  ND L+ V       +          E    IK     +      D  +++Q
Sbjct: 444 KMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYSIKRKITNQDLWVEIDTDQMMQ 503

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--H 747
           +   I++NA+ +S  G  + +  ++     I S+ + G  IP+     +F+RF       
Sbjct: 504 VIDNIMNNAIKYSPDGGVITVGLSQSQNQIILSISDQGLGIPKKDLNKIFDRFYRVDKAR 563

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             ++ G GLGL+I +  +  H G +   S +   +T    +P +
Sbjct: 564 SREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFYISLPFE 607


>gi|312215607|emb|CBX95559.1| similar to putative histidine kinase group protein [Leptosphaeria
           maculans]
          Length = 1313

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 233/664 (35%), Gaps = 89/664 (13%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETE---GIVFQKAIGESRKLFKEEIKKRMI 253
            + +S++   +       +   N +  +    +       Q+       ++ ++ ++ + 
Sbjct: 305 AILNSINLPSFALSHDESLGLPNKALLRLLPKDRMYSAGDQRDFLSQFPVWTDDFQRTLS 364

Query: 254 SSSALEKNFCETVSTL---------EHGNNKSYKIV-------RVLNSFGEAGIAIDVSK 297
                    C +   +           G    +++              G   +  D+++
Sbjct: 365 VDEFPVVEVCRSRKRVKTRIGMRQPVTGTRIVFEVSGEPVYHDESGEFLGGIVVFKDITE 424

Query: 298 -----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
                   + +       I + + V +     +    + ++ + +   + +         
Sbjct: 425 YANEIAAQIQENERQFESIANFMPVMVWTTTPDGLHDWFSQRWYDYTGLTVE-------- 476

Query: 353 DELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNP- 408
               + +    +LP    + K   ++ F   K+ E +   +     +G+   ++  + P 
Sbjct: 477 ----QSIGEGWRLPFHPEDMKITVKSWFHCLKTGEEYNTEYRCQRFDGEWRWMLGRALPI 532

Query: 409 --RGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               G     I    ++   V    +     +   + I H    +     D ++ L    
Sbjct: 533 FDDSGRIVKWIGTCTDIHDLVVARQEARRTREQLQQVIQHAKILLWAVNRDNKLVLLEGD 592

Query: 463 FRSLWKTE---------ENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAIITSFD 508
                            E        +  I A     + E      +G      ++  + 
Sbjct: 593 DGDTKDDGKLGGGGNREEMLGQDIYDVFQIPAMERERWQEPIHEILEGKQQTEIVMGRYI 652

Query: 509 DERKSLQGTL--------------ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            E +  +  L              ++  D V+  S   +   +       + +  +    
Sbjct: 653 SEARFYRTRLVPLLNTSRTAGVDGKVFVDGVIGVS---MDVTELREREEQLREQEKENSR 709

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L     A ++A  +K++ + + S+ELR+P+  +IG ++LL       LN +Q +  E I 
Sbjct: 710 LLANTAAAKEASRMKSNLLANTSHELRTPIAGVIGMSELLFDM---DLNEEQKECTENIH 766

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S++ LL ++NDILD + V++G + +      L+ +L +V + ++       +  +    
Sbjct: 767 RSASSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLAYQSFIQ 826

Query: 675 GKLGS---FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNG 727
            ++      + D  RL QI   +L+N++ F+S G   + +  +R+  + +   F+V + G
Sbjct: 827 DEVEMDLRVMGDPGRLRQILINVLTNSIKFTSVGVVKLTVGISRETKNTVTVNFTVSDTG 886

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E++ K +F  F        RR  G GLGL+I ++ + L  G + + S     TT  
Sbjct: 887 IGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLAISKNLVELMKGQIWLDSKLGQGTTAT 946

Query: 786 CRIP 789
             IP
Sbjct: 947 FWIP 950


>gi|163848601|ref|YP_001636645.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526536|ref|YP_002571007.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669890|gb|ABY36256.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450415|gb|ACM54681.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 952

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 95/567 (16%), Positives = 216/567 (38%), Gaps = 31/567 (5%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI--T 300
           L           +S  E ++   ++        +Y +     +    G+ + V++E+   
Sbjct: 160 LVNSTFFALRAVASVAESDW---LTVSPPWQTATYLVAIATTTLWTFGLILLVNQELVNR 216

Query: 301 VNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAF-LATNPSNDELLEF 358
            ++ +    +I      A+ +    +      N  F  +        +  +     L   
Sbjct: 217 QHEAVQQLEQIFAAQPDAVLLSRLTDGVFVKVNHGFTTISGYSADEAIGKDALTLNLWRS 276

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
                +  E +  +     +   ++  +    T  + + Q + +    +     I +  +
Sbjct: 277 PEDRRRWAEIMRREGACSGMEFDFRRRDGTFRT-CILSSQVVMIRGVPH----AISIVHD 331

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENR---- 473
           ++ +  +E              ++ ++ + ++ P   +    +P+   L           
Sbjct: 332 ISERKRMEEALRRSDARYRLIAENTTDVIWLYDPFKSQFTFFSPSIEKLIGYSAAEALDL 391

Query: 474 ----LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                     I+++        +E +G    A   T+  D        ++  ++ V  + 
Sbjct: 392 PLSAFLKPDSIQHVKTALDYMLHEWEGELTNAPPWTAEIDLIHRDGQIVQ--AEIVTSFV 449

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                    +    ++T   + E  L    +    A+  K++F+ +VS+ELR+PL  ++G
Sbjct: 450 RDEEGQLMVLGVARDITARKQTEIELRLARQQAEAANRAKSAFLANVSHELRTPLHAVLG 509

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F  L+  S+  +L + Q +Y+  I+ +S  LL+L+N++LDLA +++G      + + +  
Sbjct: 510 FAQLM--SRDDNLTATQHEYLAIINRNSEHLLHLINEVLDLAKIESGRYTYTPNPLDVRR 567

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           LL +++     +     +++ V  + +     V+D  ++  I   +L NA+ F+  G +V
Sbjct: 568 LLADLQALFGPQAEAKQLQLIVTCEEQVPPMIVSDEAKIRHILINLLGNAIKFTH-GGSV 626

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN---AHRGQRRGVGLGLSIVESFI 765
            L+A  D     F V++ G  I       +F  F      A+     GVGLGLSI   F 
Sbjct: 627 RLRADTDKQQMYFIVEDTGVGISPLEQPYLFRPFFQGKQTANASSDTGVGLGLSISYEFA 686

Query: 766 NLHGGHVSISSS-DEGVTTINCRIPSK 791
            L GG +S+ S+ +         +P +
Sbjct: 687 RLIGGDLSVYSAGEGQGARFTLTLPLR 713


>gi|291570932|dbj|BAI93204.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1057

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 12/287 (4%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   +    ++++ S+    +   ++   ++T+  R  + LT KN  L + + +K+ F+ 
Sbjct: 296 QRVWQFTRRTLVQPSLTECFDKWWLIIAQDITEQYRVAQELTAKNADLIQLNRLKDEFLA 355

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+EL++PLT ++G + LLK   LG L+ +Q++Y + I  S   L+ +VNDILDL  ++
Sbjct: 356 CISHELKTPLTAVLGLSSLLKDKALGELSDRQAKYAKLIHQSGRHLMMVVNDILDLTRIE 415

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI----------RIKVISDGKLGSFVADR 684
            G ++L    + +  + +   +++     + +I          +  +  +  L +  AD 
Sbjct: 416 TGQLELTPEGVNIKTVCDRALEAVLHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADE 475

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   ++SNA  F+  G  + L+  R     +F+V + G  IPE     +F +F  
Sbjct: 476 LRLRQMLINLISNAFKFTPDGGYMGLRVNRWEDWVVFTVWDTGIGIPEQKQHLIFEKFQQ 535

Query: 745 NAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  Q  G GLGL + +    LHGG +S  S     T     +P
Sbjct: 536 LESPLNRQFEGTGLGLVLCQRLARLHGGDISFISHQRKGTEFTLLLP 582


>gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
 gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
          Length = 907

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 135/261 (51%), Gaps = 7/261 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + Q   +     +  + +  L EKN++++ +   K+ F+ ++S+ELR+PL +I+  + +L
Sbjct: 468 HEQYKESDQKTKELEKIKEDLEEKNKSIQLSSRYKSEFLANMSHELRTPLNSILILSQML 527

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +  G+L+ KQ ++ E I +S   LL+L+NDILDL+ +++G +++    + + D+   V
Sbjct: 528 SENANGNLSKKQIEHAETIYSSGKDLLDLINDILDLSKIESGKVEVYPEELFIEDMRAFV 587

Query: 655 KQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA- 712
           ++       +  ++       +  S    D QRL QI   +LSNA  F+++G TV  +  
Sbjct: 588 ERQFHPIAEQKGLQFNCYIHQETPSILYTDDQRLKQILKNLLSNAFKFTAQG-TVRFEVH 646

Query: 713 --ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               ++   +FS+ + G  IP +  +SVF  F        R   G GLGLSI     NL 
Sbjct: 647 PSYSESTKVVFSIIDTGIGIPPEKQESVFEAFHQGDGTTTREYGGTGLGLSISRELANLL 706

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG + + S D   +T +  +P
Sbjct: 707 GGRIEVVSEDGKGSTFSLYLP 727


>gi|256829207|ref|YP_003157935.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578383|gb|ACU89519.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1096

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 105/524 (20%), Positives = 209/524 (39%), Gaps = 54/524 (10%)

Query: 294 DVSKEITVNDQLTHTYEIL---HNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+ +     ++L  +  +L     L+ +    +D  + +    R    L           
Sbjct: 444 DILEHKRAQEELGKSEALLNMTQRLSRIGGWQWDVTQGVMTWTRELYRLHGFAPDQFEPG 503

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVT-- 405
                  E +RS+    E  + +  ++   +       +  + T+    G+ + +  +  
Sbjct: 504 SP-----EHIRSSQACYEPEDRELIRQAFENCVTHGLPYDLELTFTPVGGERIRIRTSGE 558

Query: 406 SNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA----VFGPDGR-- 455
           +    G     +  F+++T +  LE +Y  L         H+ +G A    +    GR  
Sbjct: 559 AMWENGRVSKVLGTFQDITEKRALEQRYEAL-------FQHMLDGFALHEIICDASGRPV 611

Query: 456 ---IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
                  NPAF          +  G  +R +     + + ++ G          F++   
Sbjct: 612 DYRFLEVNPAFERHTGLAGKDIK-GRTVREVLPLVEQVWIDTYGKVALTGEPVFFEEYAS 670

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           +     ++ +     +   P+  A     F ++TD  R ER L +  +A   A+  K+ F
Sbjct: 671 AQDKFFQVSA-----FRPTPMRFA---CIFTDITDRKRYERDLRQAKDAAEAANVAKSEF 722

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+G   L ++     L  +Q + +E  + S+  L  L++DILDLA 
Sbjct: 723 LANMSHEIRTPLNGIMGILHLFESQ---DLPGEQKKLLELANTSAGRLNGLLSDILDLAR 779

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           +++G + +  +     +L               N+ ++ I D  L S +  D  RL Q+ 
Sbjct: 780 IESGKLAIQSAPFAPRELRASTLGLFTLAAQGKNLSLEFILDDTLPSMLEGDESRLRQVL 839

Query: 692 SKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             ++ N++ F+  G  V ++     G      +F V ++G  I +   K +F  FV    
Sbjct: 840 FNLVGNSLKFTRAG-FVRVEVGPLPGGASPRILFCVTDSGPGISDHQLKDIFTPFVQGED 898

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + +G GLGL+IV+  + L  G + + SS    TTI   +P
Sbjct: 899 SYVRRHQGAGLGLAIVKRIVGLMDGCLCVDSSAN-GTTICFSLP 941



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 168 ILSLDGIYSELAETT-------LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
           +  L+ +   + E         L  + L++  ++ + +  +L    W RD   +I+  + 
Sbjct: 22  LRELESLRRRVTELEDITCAAALAEETLAHQDALMQAMLRNLPLDFWARDLNENIIIQSD 81

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +  +               S ++ +   +       A E    E    L +G  + ++ +
Sbjct: 82  ASVRLWGDLSTTRVDDADVSEEI-RSTWRSVNERVYAGEVLTGEKEYVLPNGEKRIFRDI 140

Query: 281 RVL-----NSFGEAGIAIDVSKEI----TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
                    + G  G  ID+++ +     ++    H   +L+++  + A+ + +  +   
Sbjct: 141 VAPIRKGDETLGILGTNIDITEHVHSILALHKSEAHLASLLNSIDESAALLEPDGKVITV 200

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           N++F               + +E L         PE    +                +D 
Sbjct: 201 NKTFAA---------RVGRTVEECLGQSIYDFIPPEAAQTRKRMVEDLVRNARPVAFEDE 251

Query: 392 WHLPNGQTLHVIVTSN--PRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            H   G+ +   ++      G          +LT +   E       ++    I+H
Sbjct: 252 RH---GRWMRHSLSPVLGSDGTVAAVAIFAMDLTERRRREALLLARQRLGEYAINH 304



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 84/258 (32%), Gaps = 31/258 (12%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            Q      +L NL +     D N  +   + + V LW        T   + ++ E +RS 
Sbjct: 51  HQDALMQAMLRNLPLDFWARDLNENIIIQSDASVRLWG---DLSTTRVDDADVSEEIRS- 106

Query: 363 NKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNG--QTLHVIVTSNPRG----GTIWM 415
                     TW+     VY     T +  + LPNG  +    IV    +G    G +  
Sbjct: 107 ----------TWRSVNERVYAGEVLTGEKEYVLPNGEKRIFRDIVAPIRKGDETLGILGT 156

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T  V      +         ++ + E  A+  PDG++   N  F +          
Sbjct: 157 NIDITEHVHSILALHKSEAHLASLLNSIDESAALLEPDGKVITVNKTFAARVGRTVEECL 216

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             +    I    ++         +  A   +F+DER              + +S+ P+  
Sbjct: 217 GQSIYDFIPPEAAQTRKRMVEDLVRNARPVAFEDERH----------GRWMRHSLSPVLG 266

Query: 536 AQTMLTFVNVTDSVRAER 553
           +   +  V +      ER
Sbjct: 267 SDGTVAAVAIFAMDLTER 284


>gi|17228780|ref|NP_485328.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130632|dbj|BAB73242.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 603

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 3/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L   N+ L + +++KN F+ + S+E+R+PL++IIGFT LL          +  +Y+  
Sbjct: 217 QNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDPTRERHHEYLNI 276

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LL L+NDILDL+ ++A  +++ +  + + +L   V   I  K     +++ + 
Sbjct: 277 IQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKEKAANKGVKLSLE 336

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  + +FVAD  RL Q+   +L NA+ F+++G TV LK  + +    F+V + GS I  
Sbjct: 337 LDPNIKTFVADPLRLKQMLLNLLFNALKFTNQG-TVGLKVTQQDSFIHFTVWDTGSGISP 395

Query: 733 DMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F  +    +    Q  G GLGL +      +H G V + S     +     +P 
Sbjct: 396 ENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVESQVAHGSRFTIILPL 455

Query: 791 KE 792
           ++
Sbjct: 456 QQ 457


>gi|282898162|ref|ZP_06306153.1| Histidine Kinase [Raphidiopsis brookii D9]
 gi|281196693|gb|EFA71598.1| Histidine Kinase [Raphidiopsis brookii D9]
          Length = 624

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 125/244 (51%), Gaps = 6/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L + +  L   +++KN F+ + S+E+R+PLT+IIGFT+LL      +   +  +Y++ 
Sbjct: 223 QSLLQFSYNLEHKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYQAERERHQEYLQI 282

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LL+L+NDILDL+ ++A  +++ +  + +  L   V   +  K  +  +++++ 
Sbjct: 283 IQSSGKHLLSLINDILDLSKIEANQLEVQWEVVDIPSLCKSVLALVKEKAGDKGLKLQIQ 342

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               + + + D  RL Q+   +L NA+ F++ GS V L+    +    F+V + G  I E
Sbjct: 343 ISEDVSTLLVDPLRLKQMLLNLLFNAIKFTNVGS-VGLRVVIKDSWLRFTVWDTGVGISE 401

Query: 733 DMCKSVFNRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +    +F  +    +    +     G GLGL + +    +HGG + + S     +     
Sbjct: 402 EDLSLLFRPYTQLVNTINTQIDKNHGTGLGLIVTKQLAEIHGGSIEVRSQLNQGSEFTII 461

Query: 788 IPSK 791
           +P K
Sbjct: 462 LPLK 465


>gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1989

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 97/392 (24%), Positives = 175/392 (44%), Gaps = 29/392 (7%)

Query: 415  MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +FE  +T  ++L   +    ++     D LSE +A+          N    S+ +TEE  
Sbjct: 1111 LFEGQVTAVIEL-ASFQRFSEIHLTFFDQLSESIAIV--------LNTIAASM-RTEELL 1160

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                +    +          +   +  A  + + ++  K  Q  L+  ++++ E +   L
Sbjct: 1161 KQSQSLAEELQTQQGELRETNQRLEQQAQSLKASEELLKKQQEQLQQTNEALEEKA--RL 1218

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             + Q         +  +A R+L EK E L      K+ F+ ++S+ELR+PL +++    L
Sbjct: 1219 LSLQNEEVERKNAEIEQARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKL 1278

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L  +   +L  KQ +Y   I +S + LL L+NDILDLA +++G M +    + L DL ++
Sbjct: 1279 LADNIENNLTPKQVEYAATIYSSGSDLLGLINDILDLAKIESGTMSIEVEQMQLEDLRHQ 1338

Query: 654  VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
            +++S     H+  +   +I D +L  S   D +RL Q+   +LSNA  F++KG   +   
Sbjct: 1339 IERSFRQIAHDKGLEFSIIFDPRLPSSIYTDSKRLQQVLKNLLSNAFKFTAKGQVSLSLE 1398

Query: 710  --LKAARDNGDFI--------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
              ++    + + +        F+V + G  I  +  K +F  F         Q  G GLG
Sbjct: 1399 PAIRGWSLDNEILNSAELVLAFAVTDTGIGIAPEKQKLIFEAFQQADGTTSRQYGGTGLG 1458

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LSI      L GG +++ S     +T    +P
Sbjct: 1459 LSISREIARLLGGEITVISRLGYGSTFTLYLP 1490


>gi|291570453|dbj|BAI92725.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 497

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 174/374 (46%), Gaps = 32/374 (8%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS--RYYNESDGWDLF 500
           L E VA F  D  I+      R++   + + L   + +   +       Y+ ES+     
Sbjct: 43  LKEAVA-FDNDPYIEYIVEQNRAISCHKNDCLIKLSELNMASPFLQTHEYFEESENLKSM 101

Query: 501 AAIIT-------------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVT 546
            AI T               D +R      +EL+ +++     I + +AQ +        
Sbjct: 102 LAIATFYHGQPNGIISLHQCDHKRVWTVDEMELI-EAIARQLGIAIAHAQLLSQEKEQRQ 160

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +       L +  E  + A+  K+ F+ ++S+E+R+P+  ++GF DLL+++     + + 
Sbjct: 161 ELTYKNIRLKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQSTI---TDPQA 217

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S Y++ I++S   LL L+NDILDL+ ++AG ++L+Y  + +  ++NE++     K  E N
Sbjct: 218 SSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEHIFEQKTKEKN 277

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------RDNG 717
           I+++V    ++  S + D  RL QI   I+ N++ F+  GS  I+ +          ++ 
Sbjct: 278 IKLQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASCSQLKPNHPYNSI 337

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +   ++ + G  I  +  + +F+ F  +      +  G GLGL+I E  ++L GG + + 
Sbjct: 338 NLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLE 397

Query: 776 SSDEGVTTINCRIP 789
           S     +T     P
Sbjct: 398 SQINQGSTFTFDFP 411


>gi|298376615|ref|ZP_06986570.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266493|gb|EFI08151.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 605

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 210/532 (39%), Gaps = 42/532 (7%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEI 341
           N         DVS   T N+       IL  L + + + D +      + N    E+  I
Sbjct: 93  NEELVIVYTRDVSSMKTENNLQELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGI 152

Query: 342 DLAFLATNPSND----------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           +   +  +   +          E LE   +  K      +K   ++    Y+  E  K  
Sbjct: 153 ETREIEGHDDFEVNYNALMTAEERLETDMNVIKTGLTARFKGKVKSASGDYRDIEVAKYP 212

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT--LVKVQGETIDHLSEGVAV 449
             L NG+ L            + ++ ++T ++  E       ++      I  +      
Sbjct: 213 ISLNNGKPL-----------VLALWRDITSELATENTLRRTRILTKMALRISDIRTCSIF 261

Query: 450 FGPDGR------IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
             PD        +   N    +    +   +S G  I         +Y+          I
Sbjct: 262 IDPDSTHNFKDSVVTLND--WNTMSEDMIEVSWGQFISRAHPDDQEHYHNMFTRLCRGEI 319

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNE 560
             +  + R    G  E +   V           +    +    N+ +    E +L E   
Sbjct: 320 SEARIEARMLFPGKKEYVWREVFATVYERDDKGRPSVILGCSTNIQERKNQELSLEEAKV 379

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               AD++K+ ++  +S+E+R+PL  I GF++L+        + ++  Y + I  ++ +L
Sbjct: 380 KAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTDEERMSYYDVIKMNNQLL 436

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + L+NDILD++ ++A  +K+ Y  + +++L++ +  S   ++    +++ +  +     F
Sbjct: 437 MQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP-GGVKLVLEKEADHHMF 495

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RLLQ+ + +++NA+  + +GS  +    + +    F V++ G  I ++  K VF+
Sbjct: 496 GTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYVRDTGIGIDKEKLKDVFD 555

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RFV         G+GLGL+I +  +   GG + ++S     +  +  +PS E
Sbjct: 556 RFVKINDY--MEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILPSHE 605


>gi|220908653|ref|YP_002483964.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865264|gb|ACL45603.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 645

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 162/396 (40%), Gaps = 28/396 (7%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F ++  +++  E +    +  +   ++ L    ++G  +   + RI L N A R
Sbjct: 247 GELITSFNDMAERLERYEEQNIEELTAEKAKLETLVATIADGAILLDTEMRIILINTAAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+  E   +        +       +      +L   +  +   ER+  +  + L S S
Sbjct: 307 RLFNWEGKEV--------VGENALHCFPSPVCVELTRPLFQTAIGEREGGEFRVTLDSSS 358

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                I+               +  +      +      + ++ K+ F+ +VS+ELR+PL
Sbjct: 359 PRIVRIL------LTSVLDQYREKPKGVAITVQDITREVELNDAKSQFISNVSHELRTPL 412

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  F + L         +++ ++++  +  +  L  LVND+LDL+ +++G  + ++  
Sbjct: 413 FNIKSFIETLHEYGDDLSAAERREFLDTANRETDRLTRLVNDVLDLSRLESGK-RYHFEA 471

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L   + +  ++      +  I +   ++  L +   +   LLQ+F  ++ NA+ F+ K
Sbjct: 472 MDLVQAIEQTLRTHQLNARDKGIELIQEAEPALPNVWGNYDLLLQVFGNLVGNALKFTPK 531

Query: 705 GSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGL 756
           G  V ++A                 V + G  I  +   ++F+RF    +R     G GL
Sbjct: 532 GGRVAIRAYVLAQTPPLTGKQVRVEVSDTGIGIAPEDQSAIFDRFFRVENRVHTLEGTGL 591

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLSIV++ +  H   + + S     TT    +P  +
Sbjct: 592 GLSIVQNIMQKHHTTIHLVSEVGVGTTFWFDLPVYQ 627


>gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 914

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 10/244 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E      + K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q  YV+ IS+
Sbjct: 395 RRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRET---PLDRSQRFYVDTISS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S + L+ ++NDILD A +++G + L      L D+++E       +  +  +R+ V  +G
Sbjct: 452 SGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRLRLYVSLEG 511

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSI 730
            +      D  RL Q+   +LSNA+ F+++G   +  + R +       +F+V ++G  I
Sbjct: 512 GVPRRIQGDPTRLKQVLMNLLSNALKFTAEGHVAVSVSRRSDSHGQPHLVFAVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            E     +F  F        RR  G GLGL+I +  + + GG + + S+    T     I
Sbjct: 572 SEQALAKLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTPGQGTRFAFDI 631

Query: 789 PSKE 792
           P  E
Sbjct: 632 PLLE 635


>gi|319900835|ref|YP_004160563.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415866|gb|ADV42977.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 375

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 179/377 (47%), Gaps = 23/377 (6%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               ++ G  + ++   V +   D  +  +N    +  +  +     G  +R   A  + 
Sbjct: 2   QMTNELFGAIMRNIHAYVLLIDRDFTVFYTNYYDITGTEKPDKPKRVGDLLRCSNALSAA 61

Query: 490 Y----YNESDGWDLFAAIITSFDDERK--SLQGTLELLS--------DSVLEYSIIPLPN 535
                +       +  AI  ++   R    L+  L +          D+ +    + +  
Sbjct: 62  GGCGTHELCSVCPVRQAIEQAYCARRNFVDLEAVLNVKGADGKAVECDTYVSGEYMEIEG 121

Query: 536 AQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              M +T  ++T   + E  L +  E    AD  K+ F+ ++S+E+R+PL  I+GF++LL
Sbjct: 122 RDCMVITVHDITRLKQVEVELRQAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELL 181

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            +    S   +++Q++  +  ++ +L  L+ DILDL+ ++AG ++  +S I +N L++++
Sbjct: 182 AS---ASSEEEKAQFLGIVQNNNEMLQQLIADILDLSKIEAGTLEFVFSDIDINQLMSDL 238

Query: 655 KQSIATKMHENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +Q    ++ E    +++   +  +      DR RL Q+ +  ++NAM F+ +GS + L  
Sbjct: 239 EQQFRMRLKEQGSAVQVIRETPPEGCVMHMDRNRLAQVIANFMTNAMKFTDEGS-ITLGY 297

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             +   F F VK+ GS IP++   ++F+RFV      +++G GLGLSI ++ ++  GG +
Sbjct: 298 RTNEDGFYFYVKDTGSGIPKEKLPTIFDRFVKLEQ--EKKGTGLGLSICQTIVSKLGGKI 355

Query: 773 SISSSDEGVTTINCRIP 789
            + S     +T    +P
Sbjct: 356 GVDSEVGKGSTFWFTLP 372


>gi|315126944|ref|YP_004068947.1| two-component member protein [Pseudoalteromonas sp. SM9913]
 gi|315015458|gb|ADT68796.1| putative two-component member protein [Pseudoalteromonas sp.
           SM9913]
          Length = 1103

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 90/501 (17%), Positives = 193/501 (38%), Gaps = 27/501 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRS 361
            + +    IL      I   +    +   N++   ++   D   +  N         +  
Sbjct: 269 AEESRLDAILSTAIDGIVTINIKGTILSFNKAAETIFGWQDNEVIGQNVK-------ILM 321

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIV------TSNPRGGTIW 414
           A+ +  Q +          V +    ++D W    NG    + +              + 
Sbjct: 322 ADDIANQHDAFLKNTTNHEVKRVIGVNRDVWAKHKNGHQFPIRLGIGEVKQLQTETLFVG 381

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA---VFGPDGRIKLSNPAFRSLWKTE- 470
              +LT Q  L+       +     ++++  GV    +      +   +P+   L     
Sbjct: 382 FITDLTEQRALQQSLIEKERQYRTLMNNMP-GVVFRCLLDEHWSMLFISPSVYELTGYRA 440

Query: 471 -ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            E      T    I        + +    + +    S +   +   G +  + D     +
Sbjct: 441 EEFTEQRITFAELIVKEDEAAISLAIDQAVASTSQYSIEYRIRHRNGNIIWVLDQASIIT 500

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                        V++T     E++L +       A + K SF+ ++S+E+R+P+  IIG
Sbjct: 501 NSKDDTRWVDGVLVDITKRHEYEQSLKQAKYEAEAAAQAKQSFMANMSHEIRTPMNAIIG 560

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+D+L  S    LN +Q + +  ++ ++  LL+L+NDILD A ++ G +++      L +
Sbjct: 561 FSDILMDS---PLNKEQQKQIITVNNAARSLLHLLNDILDSAKLEKGKLEIQKVHFNLQE 617

Query: 650 LLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           LL+ +  +        ++++ + I+D     +  D  RL Q+ + ++ NA+ F+ +G   
Sbjct: 618 LLDNIVSTFWLDAKRKDLQLILKIADNVNPFYFGDDTRLRQVLTNLIGNAIKFTEQGHVT 677

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           +    + N   +F V+++G  I +   +++F  F        RR  G GLG +I +  + 
Sbjct: 678 VSVTHKPNQPILFEVQDSGIGIEKGRLEAIFKPFEQADGTTTRRFGGTGLGTTISKQLVE 737

Query: 767 LHGGHVSISSSDEGVTTINCR 787
           L GG +   S+    +  +  
Sbjct: 738 LMGGKIYAQSTLGQGSCFSFT 758


>gi|126700251|ref|YP_001089148.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|254976230|ref|ZP_05272702.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255093617|ref|ZP_05323095.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255101805|ref|ZP_05330782.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255315365|ref|ZP_05356948.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255518030|ref|ZP_05385706.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255651146|ref|ZP_05398048.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260684212|ref|YP_003215497.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260687871|ref|YP_003219005.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|115251688|emb|CAJ69523.1| Two-component sensor histidine kinase [Clostridium difficile]
 gi|260210375|emb|CBA64751.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260213888|emb|CBE05916.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 429

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 24/365 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L       +  +S G+     +G I L N   + + K+E N+L  G +I  +  
Sbjct: 80  EVQYKHLQ--LRSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK 137

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                  E +        I S D+E       +    D V +  + P+    T    +  
Sbjct: 138 -------EEEILKQILQFIGSKDNE----TANITTKDDIVYKIKVDPVYLQNTNNVIIGS 186

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             ++              K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++
Sbjct: 187 IVNIE-------DITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR 239

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            ++++E I + S  L  L++DIL L+ V+     L    +V+ D+  EV +       E 
Sbjct: 240 -NRFLEIIESESDRLKRLIDDILLLSFVE-NKDTLLMENVVVYDVFKEVYEITQHSASEK 297

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI +    D K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +
Sbjct: 298 NIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVID 357

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP++  + +F RF        R   G GLGL+I +  +    G + + S     + 
Sbjct: 358 NGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSE 417

Query: 784 INCRI 788
               I
Sbjct: 418 FIVTI 422



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V  +      IL +++  I   D N  +   N    E+ + +   L    + + +   
Sbjct: 79  EEVQYKHLQLRSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVV--- 135

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           ++    L + L +   K+N  +   + +   D  +      +++  T+N   G+I   E+
Sbjct: 136 IKEEEILKQILQFIGSKDNETANITTKD---DIVYKIKVDPVYLQNTNNVIIGSIVNIED 192

Query: 419 LTVQVDLE 426
           +T +V LE
Sbjct: 193 ITKKVKLE 200


>gi|254478763|ref|ZP_05092131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035275|gb|EEB75981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 456

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 161/366 (43%), Gaps = 26/366 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N         +  ++ GV  F    RI + N + + +   EE  L+ G  +  +  +
Sbjct: 105 EELNDRNATLEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLT-GRRVFEVIRS 163

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQTMLTFVN 544
                  S  +++F  +  +     KSL+       +  L+  I P+  P +   L FV 
Sbjct: 164 -------SKLYEVFETLRKNKVLSSKSLELN---FFNKHLKVYISPILHPVSHVNLGFVL 213

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V D +   R L          +++++ FV +VS+ELR+PLT+I GF + L++  + +  +
Sbjct: 214 VIDDITEMRKL----------EKMRSEFVANVSHELRTPLTSIRGFIETLRSGAIENPEA 263

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++  +++ I   +  L  L+NDIL L+ ++          I ++  + ++   +     +
Sbjct: 264 REK-FLDIIDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKD 322

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +I +K   +    + +A+R R  Q+   ++ N + ++ +G  V +    +    I  V+
Sbjct: 323 KSITLKRDLNCGNLTIIANRDRFHQMMINLIDNGIKYTQEGGFVKVSTRLEGEKIIIEVE 382

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP+D    +F RF        R   G GLGL+IV+  +    G +S+ S     T
Sbjct: 383 DNGIGIPKDKIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGT 442

Query: 783 TINCRI 788
               R 
Sbjct: 443 KFTIRF 448



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 15/223 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +ND+      IL ++   +  FD    +   N S  ++  I+   L        + E 
Sbjct: 105 EELNDRNATLEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLTGR----RVFEV 160

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +RS+        ++T ++N     KS E +    HL    +  +   S+   G + + ++
Sbjct: 161 IRSSKLYE---VFETLRKNKVLSSKSLELNFFNKHLKVYISPILHPVSHVNLGFVLVIDD 217

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T    LE   +  V      +        +    G I+          +  E  L    
Sbjct: 218 ITEMRKLEKMRSEFVANVSHELRT-----PLTSIRGFIETLRSGAIENPEAREKFLDI-- 270

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            I   A   +R  N+         +   +  E+  +   +E +
Sbjct: 271 -IDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDI 312


>gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 922

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 96/398 (24%), Positives = 171/398 (42%), Gaps = 35/398 (8%)

Query: 418 NLTVQVDLET-----KYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEE 471
           +L  + + E      + +   +     ++    G+ +  P+   I+ +NPAF  L     
Sbjct: 396 HLLEEREAERNVALVRLSESEEQYRILLESNPAGICLVDPETMAIEFANPAFLRLLGLGP 455

Query: 472 -----NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                 R+S      ++ A    +   S     F+A I      R   +  +++ S  V 
Sbjct: 456 EDVGAIRVSDIHPPEDLEAISESFMRHSRQGVSFSAAIPCLT--RGGERILVDISSARVR 513

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            Y  + L    T     ++T+  R E AL    EA  +A+  K+ F+ ++S+E+R+PL  
Sbjct: 514 IYGRVLLAGFFT-----DITERKRYEDALVVAKEAAEQANRAKDEFLANISHEVRTPLNG 568

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   L++   + + + +Q   V+    SS  LL ++ND+LD + ++AG + L      
Sbjct: 569 VMGMLQLIR---VSATSGEQLANVDIAIQSSRNLLRVLNDVLDFSKIEAGKLDLYNEPFD 625

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+ +       +  E  + +    D      ++ D  R+ Q+   +L NA+ F+  G
Sbjct: 626 LAGLMRQCVSLFKQQADEKGLVLDSRIDPSARECYLGDEGRIRQVLFNLLGNAIKFTMYG 685

Query: 706 STVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
           S + L+A              FSV + G  IP+     +F+ F         + +GVGLG
Sbjct: 686 S-ITLEAYALAHPEPGCERLFFSVTDTGVGIPDSKVDYIFDSFTQVDSSLSRKYKGVGLG 744

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTI----NCRIPSK 791
           L IV+  I L GG + + S     TTI      RIP+K
Sbjct: 745 LPIVKRLIRLLGGTLVVDSEMGAGTTILFNVQVRIPAK 782



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 27/186 (14%)

Query: 284 NSFGEAGIAIDV------SKEITVNDQLTHTYE-------ILHNLTVAIAIFDQNRY-LQ 329
              G+ G A D        +E   N  L    E       +L +    I + D     ++
Sbjct: 382 GEMGQLGKAFDTMGHLLEEREAERNVALVRLSESEEQYRILLESNPAGICLVDPETMAIE 441

Query: 330 FHNRSFVELWEIDLAFLAT-NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           F N +F+ L  +    +     S+    E L +   + E     + +   FS      T 
Sbjct: 442 FANPAFLRLLGLGPEDVGAIRVSDIHPPEDLEA---ISESFMRHSRQGVSFSAAIPCLTR 498

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETID 441
                L +  +  V +    R      F ++T +   E              + + E + 
Sbjct: 499 GGERILVDISSARVRIYG--RVLLAGFFTDITERKRYEDALVVAKEAAEQANRAKDEFLA 556

Query: 442 HLSEGV 447
           ++S  V
Sbjct: 557 NISHEV 562


>gi|311696699|gb|ADP99572.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 1166

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 154/382 (40%), Gaps = 30/382 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +  + ++      D+  EGV    PD R   +NPA   L     +        R +   
Sbjct: 408 QRALSNLQRYQSLFDNAIEGVFQMSPDRRFVTANPAMARLLGYNSS--------RELLKR 459

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-----SDSVLEYSIIPLPNAQTMLT 541
                      +    ++    + R +++G           +     S+  + + +   T
Sbjct: 460 NPDVLETCIADERLRRLVIEQLEARGTVKGIEARYLTRDGDERWATISLHTVYDTEGEPT 519

Query: 542 FVNVTDSVRAE-----------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            +  T     E                + E  R + E K+ F+ ++S+E+R+PL  IIG+
Sbjct: 520 HLEGTCIDATESHNRLRIEREREQERLEKELARNSAEAKSQFLANMSHEIRTPLAAIIGY 579

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + L    L     ++    E +  S   LL+LVNDILD + +DA  + ++  ++ L +L
Sbjct: 580 GETLLDPDLS--EPEKRSSAETVVRSGRHLLDLVNDILDHSKIDANKLDVDIVSVNLPEL 637

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-V 708
           L+E++   A +  E  +   +I +  L      D  RL QI   +  NA+ F+ KGS  +
Sbjct: 638 LDEIRAFFAPRAREKGLDFSIICEYPLPEQVRTDPTRLRQIIINLCGNALKFTDKGSISL 697

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
           +++  RD    +  V + G  +  +    +F+ F   +     Q  G GLGLSI      
Sbjct: 698 VVRCDRDQELLVARVVDTGIGMKPEQLGRLFDPFAQGSAAISRQYGGTGLGLSISRRLAE 757

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           + GG + ++S+    +     I
Sbjct: 758 MLGGSIRVNSTYGEGSEFELSI 779


>gi|330800409|ref|XP_003288229.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
 gi|325081737|gb|EGC35242.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
          Length = 1400

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 89/388 (22%), Positives = 162/388 (41%), Gaps = 21/388 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT------------ 469
           ++          K     +D + + VA+   +G +   N                     
Sbjct: 55  ELQQMRAITISNKNARIMLDEMYQFVALLDVNGNLLDVNEPALQGGGMIRASIQGIPFWD 114

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                +   +I N+     +                S   E+ ++  +L  L +   E S
Sbjct: 115 CRWWATSQENIDNVREAVHKASKGEFIRYETEIFGKSAGTEKITIDFSLMPLFNDKGEVS 174

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +I           +   +  R    L    E +++ DE+K  F  +VS+ELR+PL  I+G
Sbjct: 175 LILPEGRNITEKRLGEIEIERKNNELRSLYEKIKELDELKTQFFANVSHELRTPLALIVG 234

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            TD L   +  +L+    + ++ ++ +S  LL +VN++LD++ ++AG M LNYS + L+ 
Sbjct: 235 PTDKLLKEE--NLSENVRKDLDIVARNSRSLLKIVNNLLDISRLEAGKMNLNYSMVNLSQ 292

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            ++ +         E ++   +I+         D  ++ ++ + +LSNA  F+  G +V 
Sbjct: 293 TVHLIASCFEILAREKSLDFSIITPSIPLMAAIDADKMQRVITNLLSNAFKFTPSGGSVK 352

Query: 710 LKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVE 762
               + +       F   V + G  IPE + + +F RF  V   +  +  G GLGLSIV+
Sbjct: 353 CILEKFDISPTVPGFQIIVSDTGPGIPEKLHEIIFERFRQVDGTNTRKHGGTGLGLSIVK 412

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
            F+ LHGG VSI +  +       RIP 
Sbjct: 413 EFVTLHGGTVSIHNGSKCGAQFTLRIPL 440



 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 139/343 (40%), Gaps = 38/343 (11%)

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             +R +    S Y N+    +   A + +    +K+ Q   E LS +  +  +  L N  T
Sbjct: 664  RVRLLQNGVSDYVNKPFSSEELVARVVNLMTMKKAKQFLQEELSSANTD--LQELINQLT 721

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +       D       L ++   L   ++ K+ F  ++S+ELR+PL  I+G+  LL    
Sbjct: 722  LK----KRDLQALVGELEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDL 777

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              S +S     ++ I   ++    L+ND+LD++ +      L    + L  L+     SI
Sbjct: 778  DSSDDSTIRTGLQTIERCASSQNQLINDLLDMSLIIGDKFSLIMGEVDLPLLIQNAIASI 837

Query: 659  ATKMHENNIRIKVISDGK------LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                   +I I    +        L +   D+ RL Q+   +LSN++ F+++   + + A
Sbjct: 838  LVSAQSKHITIDTNIEEPPQDPQVLQNLRGDKSRLQQVIWNLLSNSIKFTNENGKIEIHA 897

Query: 713  -----------------------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--H 747
                                    + +   + ++ +NG  IP     +VF+RF       
Sbjct: 898  KVLNQIPINELGFCSNPMFNPIQRQGDRWILLTISDNGKGIPHQFLPNVFDRFKQADCSS 957

Query: 748  RGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
                 G+G+GLSI ++ I+LH G V  +S  +   +     +P
Sbjct: 958  TRSYGGLGIGLSITQNIIHLHKGAVFANSQGENKGSQFTVVLP 1000


>gi|209527054|ref|ZP_03275569.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492482|gb|EDZ92822.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1376

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/359 (23%), Positives = 162/359 (45%), Gaps = 25/359 (6%)

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            +A+     +   S+  ++         L    H++++ +  + Y  E +G       +  
Sbjct: 766  LAILLNQDQAIASDDVYQDPLLFPHYDLCRQIHLKSMLSVRTSYKGEPNG----VISLQQ 821

Query: 507  FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKA 565
             D  R      +EL+ +++ +   I L  AQ +     +  +     +AL E     + A
Sbjct: 822  CDRFRHWTHEEIELI-EAIAQQVGIALAQAQLLEQEKLHKLELEHKNQALKEATRHAQAA 880

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            +  K+ F+ ++S+E+R+P+  I+GF DLL++        +Q QYV+ I+AS   LL+L+N
Sbjct: 881  NRAKSEFLANMSHEIRTPMNAILGFCDLLQSLVS---EPRQQQYVKSIAASGKTLLSLIN 937

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
            DILDL+ ++AG M+L+   I L  +L E+ Q    K  E  + +    +  L  + + D 
Sbjct: 938  DILDLSKIEAGKMELHQEPIDLRVMLEEIYQIFCHKAAEKKVELIREINDNLPKAIMFDE 997

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPE 732
             RL QI   ++ NA+ F+ +G  V +    ++                 ++ + G  I  
Sbjct: 998  VRLRQILLNMVGNALKFTDEG-WVKISVVTNSNTPLNAENPESTISLEIAIADTGIGIAP 1056

Query: 733  DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + +F+ F+ +      +  G GLGL+I +    + GG +S+ S     +      P
Sbjct: 1057 EQQQRIFDSFIQSEGQSTRKYGGSGLGLAITKRLTQMLGGTISLESQLGKGSQFTLIFP 1115



 Score = 46.5 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 88/326 (26%), Gaps = 72/326 (22%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ ++    + L       + + D  +  +    +   I   N   ++     G   
Sbjct: 211 LQQEIDKSRRLEEALIESNQKLRGILDIAEEAIISVGEDQRITLFNQGAER---IFGYTI 267

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-------------KIV 280
            + IG+   +   +   ++           E V++   G  +                I 
Sbjct: 268 DEVIGQPLNILLPKNLHQIHEKHIQNFGKKEIVNSPMKGRREIVGLRKNGEFFPAEASIS 327

Query: 281 RVLNSFGEAGIAI--DVSKEITVNDQLTHTYEILHN------------------------ 314
           R+         A+  D+S       +     + L                          
Sbjct: 328 RLQLPDQVIYTAMLQDISDRQQAEQERQRLNQDLETRVKQRTQQLPNQIEQQKQIEQALR 387

Query: 315 ------------LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP--SNDELLEFLR 360
                       ++ A  I  ++  + + + ++ ++W      L   P    D +    R
Sbjct: 388 ESEEKFRQFAEAISEAFFIVSRSGEVLYISPAYQQIWGRTCESLYQEPESWFDSIDVNYR 447

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMF- 416
                  +  +   KE                  P+G+   +   S P   + G I+ F 
Sbjct: 448 PKVISGMKHQFLRKKELELE---------YPIFRPDGERRWIRACSFPIYDQDGNIYRFA 498

Query: 417 ---ENLTVQVDLETKYNTLVKVQGET 439
              E++TV+ + E +         E 
Sbjct: 499 GIAEDITVRKEAEEELQAREVALREL 524



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 3/160 (1%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + +     LE       +     +D   E +   G D RI L N     ++    + +
Sbjct: 211 LQQEIDKSRRLEEALIESNQKLRGILDIAEEAIISVGEDQRITLFNQGAERIFGYTIDEV 270

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +     + + +         I+ S    R+ + G  +       E SI  L 
Sbjct: 271 IGQPLNILLPKNLHQIHEKHIQNFGKKEIVNSPMKGRREIVGLRKNGEFFPAEASISRLQ 330

Query: 535 -NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNS 571
              Q + T +  +++D  +AE+     N+ L    + +  
Sbjct: 331 LPDQVIYTAMLQDISDRQQAEQERQRLNQDLETRVKQRTQ 370



 Score = 44.5 bits (104), Expect = 0.070,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 101/349 (28%), Gaps = 64/349 (18%)

Query: 53  KKVNETYSFLSEICDQLSKYHSLLTE--NNCLTIVWDGKDET------PEIIGQLHQRID 104
           +          ++   L      +     +    +++   E        E+IGQ    I 
Sbjct: 220 RLEEALIESNQKLRGILDIAEEAIISVGEDQRITLFNQGAERIFGYTIDEVIGQ-PLNIL 278

Query: 105 IPQ-----TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRV 159
           +P+      +  + +F      +  +K  +    LRK G+ F   A       +++  +V
Sbjct: 279 LPKNLHQIHEKHIQNFGKKEIVNSPMKGRREIVGLRKNGEFFPAEASISR---LQLPDQV 335

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCK----------------------KLSNHISVFKV 197
             +     I        E        +                       L      F+ 
Sbjct: 336 IYTAMLQDISDRQQAEQERQRLNQDLETRVKQRTQQLPNQIEQQKQIEQALRESEEKFRQ 395

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
             +++    +   ++G++L+ + +Y++          +             + ++IS   
Sbjct: 396 FAEAISEAFFIVSRSGEVLYISPAYQQIWGRTCESLYQEPESWFDSIDVNYRPKVISGMK 455

Query: 258 LEKNFCETVST-----LEHGNNKSYKIVRVLNSFGE------AGIAIDVSKEITVNDQLT 306
            +    + +          G  +  +         +      AGIA D++      ++L 
Sbjct: 456 HQFLRKKELELEYPIFRPDGERRWIRACSFPIYDQDGNIYRFAGIAEDITVRKEAEEELQ 515

Query: 307 HTYEILHNL-TVAIAIFDQNRYLQFHNRSFVEL-------WEIDLAFLA 347
                L  L  +A+A    N      N+    L       + +++  L+
Sbjct: 516 AREVALRELYQIAVA---PNLN---FNQRLESLLSMGRLQFGLEIGMLS 558


>gi|153003413|ref|YP_001377738.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152026986|gb|ABS24754.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 1816

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 172/379 (45%), Gaps = 27/379 (7%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              ++   ++    +D L+E + +          N    S+ +TEE      +    + A 
Sbjct: 1118 ASFHRFGEIHLAFLDQLTESIGIV--------LNTIAASM-RTEELLKQSQSLAEELRAQ 1168

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +   + +   +  A  + + +D  ++ Q  L+  ++ + E S   L   Q +       
Sbjct: 1169 QAELTDSNRRLEQQANSLQASEDRLRNQQEELQRTNEELEERS--RLLEVQNVEVERKNR 1226

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +  +A+ AL E+ + L  A + K+ F+ ++S+ELR+PL +++  + LL  +  G+L+ KQ
Sbjct: 1227 EIEQAKAALEERAQQLAVASKYKSEFLANMSHELRTPLNSMLVLSKLLSDNADGNLSPKQ 1286

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              + + I ++   LL L+NDILDL+ +++G M+++ S  +L  L + ++++      +  
Sbjct: 1287 VDFAQTIHSAGADLLALINDILDLSKIESGAMQVDVSECLLAGLQDYIERAFRQLASQKG 1346

Query: 667  IRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------- 718
            +R  V  D +  G+   D +RL QI   +LSNA  F+  G  V+  A    G        
Sbjct: 1347 LRFAVEVDRRTPGAIWTDERRLQQIVRNLLSNAFKFTEHGEVVVRIAPARGGWSRDAEGL 1406

Query: 719  ------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGG 770
                     SV++ G  I  +  + +F  F         +  G GLGLSI      L GG
Sbjct: 1407 NAAGSVLALSVRDTGIGIAPEKQRIIFEAFQQADGTTSRKYGGTGLGLSISRELAKLLGG 1466

Query: 771  HVSISSSDEGVTTINCRIP 789
             +++ SS    +T    +P
Sbjct: 1467 ELAVESSPGKGSTFTLYLP 1485


>gi|66812156|ref|XP_640257.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74855086|sp|Q54SP4|DHKD_DICDI RecName: Full=Hybrid signal transduction histidine kinase D
 gi|60468257|gb|EAL66266.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1546

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 91/412 (22%), Positives = 170/412 (41%), Gaps = 23/412 (5%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           Q +H +    P        E L  +++     +   K     +D + + VA+   +G + 
Sbjct: 31  QQIHYMRKQKPDHEKTR--EELIEEINHLRAVSNSNKNARIMLDEMYQFVALLDVNGNLL 88

Query: 458 LSNPAFRSLWKT------------EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
             N                          +   +I N+     +                
Sbjct: 89  DVNEPALQGGGMIRSSIQGIPFWDCRWWATSQENIDNVREAVHKASKGEFIRYETEIFGK 148

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S   E+ ++  +L  L +   E S+I           +   +  R    L    E +++ 
Sbjct: 149 SAGTEKITIDFSLMPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKEL 208

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           DE+K  F  +VS+ELR+PL  I+G TD L   +   +N    + +E ++ ++  LL +VN
Sbjct: 209 DELKTQFFANVSHELRTPLALIVGPTDKLLKDENVDIN--VRKDLEIVARNARGLLKIVN 266

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++LD++ ++AG M LNYS + L   ++ +         E ++   +I+  +      D  
Sbjct: 267 NLLDISRLEAGKMNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAIDAD 326

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFN 740
           ++ ++ + ++SNA  F+  G  V     +     +   F   V + G  IP+++ + +F 
Sbjct: 327 KMQRVITNLISNAFKFTPSGGAVKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFE 386

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF  V  +   +  G GLGLSIV+ F+ LHGG V+I +   G      R+P 
Sbjct: 387 RFRQVDGSSTRKHGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLPL 438



 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 136/357 (38%), Gaps = 52/357 (14%)

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             I+ +    S Y N+    +   A + +    +K+ Q   E LS +  +   +       
Sbjct: 657  RIKLLQNGVSDYVNKPFSSEELVARVVNLMTMKKAKQFLQEELSSANTDLQEL------I 710

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--- 595
                    D       L ++   L   ++ K+ F  ++S+ELR+PL  I+G+  LL    
Sbjct: 711  NQLTNKKRDLQTLVGELEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDI 770

Query: 596  ---------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
                     +  +   +S     +E I   ++    L+ND+LD++ +      L    + 
Sbjct: 771  DSGGSSGGGSGSISGDDSTVRTGLETIERCASSQNQLINDLLDMSLIIGDKFSLILGDVD 830

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGK-------LGSFVADRQRLLQIFSKILSNAM 699
            L  L+     SI        I +     G+       L + V D+ RL Q+   +LSN++
Sbjct: 831  LPILIENAISSILVTAQSKKISVHSNIQGEGEEESSILRNIVGDKARLQQVIWNLLSNSI 890

Query: 700  DFSSKGSTVILKAARDNG------------------------DFIFSVKNNGSSIPEDMC 735
             F+ +   + L     N                           +F++ +NG  IP+   
Sbjct: 891  KFTKEKGRIHLNLKVVNQIPSREVLGFCSNPMFNTINRHGDRWILFTITDNGKGIPKQFL 950

Query: 736  KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
             SVF+RF            G+G+GLSI ++ I+LH G V  +S  +   +     +P
Sbjct: 951  PSVFDRFKQADCSSTRSYGGLGIGLSITQNIIHLHKGAVYANSEGENKGSQFTVVLP 1007


>gi|256851720|ref|ZP_05557108.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661562|ref|ZP_05862474.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 115-3-CHN]
 gi|256615678|gb|EEU20867.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547619|gb|EEX23597.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 115-3-CHN]
          Length = 617

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 157/403 (38%), Gaps = 33/403 (8%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKL 458
            V + SN   G +   F  L+++V+   + +   + +    + H+++GV      G + +
Sbjct: 225 QVKIYSNDELGQLAEAFNTLSIRVERSQEQSESERRRLDSVLSHMTDGVIATDRHGNVII 284

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N    S    +E   +    I  I         +    +    +IT   +E    +  L
Sbjct: 285 LNQMALSFLDIKEKD-AVSKPITKILGLDDDVSAQELIGNQQEMMITV--NEGTPDEMIL 341

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                    +S+I             + D    +           K +  +  FV +VS+
Sbjct: 342 HA------NFSLIRRVTGFVSGAVCVLHDVTEQQ-----------KNENEQRQFVSNVSH 384

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT++  + + L             Q++E     +  ++ ++ND+L L+ +D G++
Sbjct: 385 ELRTPLTSLRAYIEALNDGAWKD-PEIAPQFLEVTQEETERMIRMINDLLSLSRMDRGVV 443

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMH--------ENNIRIKVISDGKLGSFVADRQRLLQI 690
           K++   +  ND L+ V       +         +    IK     +      D  +++Q+
Sbjct: 444 KMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSIKRKITNQDLWVEIDTDQMMQV 503

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              I++NA+ +S  G  + +   +     I S+ + G  IP+     +F+RF        
Sbjct: 504 IDNIMNNAIKYSPDGGVITVGLTQSQNQIILSISDQGLGIPKKDLNKIFDRFYRVDKARS 563

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++ G GLGL+I +  +  H G +   S +   +T    +P +
Sbjct: 564 REQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYISLPFE 606


>gi|253570643|ref|ZP_04848051.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251839592|gb|EES67675.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 720

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 109/517 (21%), Positives = 215/517 (41%), Gaps = 39/517 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            +     + +     ++ N+ V  A    IFD    +            ID  +   NP+
Sbjct: 212 HERSRRLEIMRSYSSLVENMPVLYARVELIFDPGARI------------IDYVYREVNPT 259

Query: 352 NDELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSN 407
            ++ +   E +          ++     + +S    +      ++L   +T L VI   +
Sbjct: 260 FEKYILPKEKILGKKYSELNPDYSPELPDRYSELNDNRQITFQYYLEKTKTHLTVISIHS 319

Query: 408 PRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
              G + +F  + T  V  +    +        +D        +     +   N +   L
Sbjct: 320 KTKGCVDVFGVDNTELVLTQQMLKSTNHKLSAALDAADMTPWKWDLQTGLLSCNVS-HDL 378

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS---- 522
           + TEE     G  I    + C     + D   +  A     + E + ++    +      
Sbjct: 379 YVTEEEVTHDGNLIIVPTSACFAKICDEDRERVRDAFERLANGETQKMREEYRVGRQWLP 438

Query: 523 ----DSVLEYSI-IPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
               +  +E    +   +A       + T + VT     E AL +      +A+ +K+SF
Sbjct: 439 SPQQNEWVEVRAAVDERDANGKPLSLIGTSMTVTQRKEMEEALVQAKVKAEEANTLKSSF 498

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+GF+ LL +++ G    KQ +Y+  I  ++T+LL L++D+LDL+ 
Sbjct: 499 LANISHEIRTPLNAIVGFSSLLVSAERGISEEKQ-EYINIIENNNTLLLQLISDVLDLSK 557

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++AG M+ +Y+ + ++ L  E++ +   +  ++ I I            ADR RL+Q+  
Sbjct: 558 IEAGTMEFDYAPVDVHGLFIELEDTFRLRNKKSGICICYHRRTTECGVKADRNRLVQVMM 617

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +++NA+ F+ +GS       R++G   F V + G  IPE+  + +F  FV        +
Sbjct: 618 NLMNNAVKFTGEGSIEFGFDVREDGFLHFYVTDTGCGIPEERLEEIFGNFVKLNSF--VQ 675

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+I  + +   GG +   S     +T    +P
Sbjct: 676 GTGLGLTICRAIVERMGGKIGAVSRLGQGSTFWFTLP 712



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 105/335 (31%), Gaps = 43/335 (12%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIR---QRNSLAKKVNE 57
           ++ G+       G++  T F            ++   +I +I L R   +R+    ++  
Sbjct: 164 LLLGLCPDDTVFGMKPPTFFERNKYYLALFFSLMALAVIYVIWLRRALHERSR-RLEIMR 222

Query: 58  TYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFEN 117
           +YS L E    L     L+ +     I +  ++  P     +  +  I           +
Sbjct: 223 SYSSLVENMPVLYARVELIFDPGARIIDYVYREVNPTFEKYILPKEKILGKK------YS 276

Query: 118 WLKFHHYIKLSKATEKLRKEGQ-SFD--LVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
            L   +  +L     +L    Q +F   L     +   I I  +  G       + + G+
Sbjct: 277 ELNPDYSPELPDRYSELNDNRQITFQYYLEKTKTHLTVISIHSKTKG------CVDVFGV 330

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV-- 232
             +  E  L  + L +         D+ D   W  D    +L  N+S+      E +   
Sbjct: 331 --DNTELVLTQQMLKSTNHKLSAALDAADMTPWKWDLQTGLLSCNVSHDLYVTEEEVTHD 388

Query: 233 -----------FQKAIGESRKLFKEEI-KKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
                      F K   E R+  ++   +     +  + + +      L       +  V
Sbjct: 389 GNLIIVPTSACFAKICDEDRERVRDAFERLANGETQKMREEYRVGRQWLPSPQQNEWVEV 448

Query: 281 RVLNSFGEA--------GIAIDVSKEITVNDQLTH 307
           R      +A        G ++ V++   + + L  
Sbjct: 449 RAAVDERDANGKPLSLIGTSMTVTQRKEMEEALVQ 483


>gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 681

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 130/241 (53%), Gaps = 2/241 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L E  + L++AD+IK+ F+ ++S+ELR+PL+ II  +++LK    G LNSKQ ++V  
Sbjct: 428 EDLREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGELNSKQLKHVTN 487

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+L+N++LD++ ++AG MKL      ++D+  E    + +  +  NI I + 
Sbjct: 488 ILNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNIEINLN 547

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +        D  +L QI   ++SN++ F+ +G  + +   ++       +++NG  I +
Sbjct: 548 IEPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYMKLIIEDNGIGIKK 607

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  K +FN F    +    +  G GLGL + +  + +HGG + + S+    T I   IP 
Sbjct: 608 EDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKIIITIPF 667

Query: 791 K 791
           +
Sbjct: 668 Q 668


>gi|56965855|ref|YP_177589.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56912101|dbj|BAD66629.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 612

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 147/393 (37%), Gaps = 26/393 (6%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V S    G +   F  LT ++ D     +   K     + H+++GV      G I L
Sbjct: 233 QVRVYSTDELGQLATAFNELTNRLHDTTLMRDREQKRLRSVLAHMTDGVIATDQSGLIIL 292

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N     L       +     +R       R   E   ++L+        D     +  +
Sbjct: 293 MNRRAEELLGIPLKHV-----LRRPIMNVLRMEEEVSIFELYERNEPLLLDLSTGEEPIM 347

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                  LE +   +   +     +        E+          K +  +  FV +VS+
Sbjct: 348 -------LEVNFSAIQEDEGPFNGLIAVLHDVTEKE---------KIENERREFVANVSH 391

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT +  + + L    +   +    +++E     +  ++ LVND+L L+ +D+   
Sbjct: 392 ELRTPLTTMKSYLEALADGAMQDEDI-APRFLEVTQKETDRMIRLVNDLLQLSKIDSNDY 450

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L+   + L   L+ + +     + + NI        +      D  ++ Q+   ILSNA
Sbjct: 451 RLDLHWVELGAFLHSIVERFEMVVKDKNIDFHRHIAKQPTYVKIDTDKMTQVLDNILSNA 510

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + +S  G  V +           S+ + G  IP +    +F RF        R   G GL
Sbjct: 511 IKYSPSGGNVTITLLHQGNKARISIADEGLGIPAESQDKIFERFYRVDKARARNVGGTGL 570

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I   +++ H G + + S     TTI   +P
Sbjct: 571 GLAIASEYVHAHEGDIWVHSEYNEGTTIYITLP 603



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 25/220 (11%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
           + +      +L ++T  +   DQ+  +   NR   EL  I L  +   P  + L      
Sbjct: 264 DREQKRLRSVLAHMTDGVIATDQSGLIILMNRRAEELLGIPLKHVLRRPIMNVL------ 317

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
                E   ++ ++ N   +   S   +      N   +       P  G I +  ++T 
Sbjct: 318 -RMEEEVSIFELYERNEPLLLDLSTGEEPIMLEVNFSAIQ--EDEGPFNGLIAVLHDVTE 374

Query: 422 QVDLE-----------TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           +  +E            +  T +      ++ L++G A+   D    ++        K  
Sbjct: 375 KEKIENERREFVANVSHELRTPLTTMKSYLEALADG-AMQDED----IAPRFLEVTQKET 429

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
           +  +     +  ++   S  Y     W    A + S  + 
Sbjct: 430 DRMIRLVNDLLQLSKIDSNDYRLDLHWVELGAFLHSIVER 469


>gi|229136290|ref|ZP_04265037.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
 gi|228647162|gb|EEL03250.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
          Length = 586

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 149/392 (38%), Gaps = 27/392 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 208 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 267

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 268 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 320

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            ++ +  FV +VS+E
Sbjct: 321 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IEQERREFVANVSHE 366

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 367 LRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 425

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 426 LMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNAL 484

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 485 KYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 544

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  I  HGG V   S +   TTI   +P
Sbjct: 545 LAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576


>gi|94263712|ref|ZP_01287520.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455911|gb|EAT06070.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 12/262 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M    +      A     E     + A+  K+ F+ ++S+E+R+P+  +IG   LL    
Sbjct: 136 MELMESNRRLGEAAVRAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAE- 194

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q  Y + I +S   LL L+N ILD + ++AG ++L+       +L+ EV   +
Sbjct: 195 --DLSDEQRSYAQIIISSGQALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLL 252

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST------VILK 711
             +    NI +       + + V  D  RL Q+   ++ NA+ F+  G            
Sbjct: 253 QPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEVGGVAMELSPAPAD 312

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            A  +    F+VK++G  IP +    +F RF         +  G GLGL+I    + L G
Sbjct: 313 PAAPHCSLHFAVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMG 372

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + + S +   +T    +P +
Sbjct: 373 GEIGVKSEEGKGSTFWFTVPLR 394


>gi|302392132|ref|YP_003827952.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204209|gb|ADL12887.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 617

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 163/391 (41%), Gaps = 30/391 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYN-----TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           G     F ++T ++    + N              +  +S  + V   + +++L NP   
Sbjct: 241 GQLAHEFNSMTERLKEFEEMNVGKVIEEKNKSEAIVKSISNPLLVTDEENKVQLMNPKAE 300

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+   E+ +     + +I        +E   +DL    + S +++       +    D+
Sbjct: 301 ELFDLNEDNIVETHFLESI--------DEDRIFDLITETLDSGEEQVGKNNEVITFKPDN 352

Query: 525 ------VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                     +  P+ + +     V           L E    L++ D++K+ FV  VS+
Sbjct: 353 NDSKGHYFRINTTPVSDREGNTNLVVT---------LLEDITHLKEVDQMKSEFVSMVSH 403

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E R+PLT++    ++L    +G +N +Q + +E        L NLV+D+LDL+ +++G +
Sbjct: 404 EFRTPLTSMNMGINMLLEENIGEINEEQKELLEVAKEDCEHLNNLVDDLLDLSKIESGEI 463

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L +  + +  +     Q   T+  E  + + +  +       AD  ++  + + ++ NA
Sbjct: 464 DLEFDAVAVKKIFEASIQPFMTQAEEQGVDL-ITEETNGLEVYADFNKITWVITNLIGNA 522

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLG 757
           + ++ KG  + L A +       SV + G  IP++    +F +FV     + +  G GLG
Sbjct: 523 LRYTGKGDKIKLLADKKGHKMHISVADTGEGIPKEYRHKIFKKFVRVGDDKDEETGTGLG 582

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG + + S     +     +
Sbjct: 583 LAISKEIIEAHGGRIWVESEVGEGSIFTFTL 613


>gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 681

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 130/241 (53%), Gaps = 2/241 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L E  + L++AD+IK+ F+ ++S+ELR+PL+ II  +++LK    G LNSKQ +++  
Sbjct: 428 EDLREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGELNSKQLKHITN 487

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+L+N++LD++ ++AG MKL      ++D+  E    + +  +  NI I + 
Sbjct: 488 ILNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNIEINLN 547

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +        D  +L QI   ++SN++ F+ +G  + +   ++       +++NG  I +
Sbjct: 548 IEPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNLAYMKLIIEDNGIGIKK 607

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  K +FN F    +    +  G GLGL + +  + +HGG + + S+    T I   IP 
Sbjct: 608 EDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKIIITIPF 667

Query: 791 K 791
           +
Sbjct: 668 Q 668


>gi|153836639|ref|ZP_01989306.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AQ3810]
 gi|149749988|gb|EDM60733.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AQ3810]
          Length = 873

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 162/368 (44%), Gaps = 16/368 (4%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +  +    E  +H  + + +  PDG I   N AF  L +     +   +          
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGAIAWVNSAFEQLTEYSLEEVVGKSP----GELLQ 289

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFV 543
               +++   L +  + S    R  +    +      +E  + P+ +      + +    
Sbjct: 290 GEDTDANTVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVER 349

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    E+ L+   +  +KA + K+ F+ ++S+E+R+P+  I+G +++L  ++     
Sbjct: 350 DITDRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP 409

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +  +  S+  L+ ++NDILD + V+AG + L      L  L+       A +  
Sbjct: 410 ---RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQAD 466

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           + N+++ V     + +  V D+ R+ QI   ++ NA+ F+ +G  V+LK       F FS
Sbjct: 467 KKNLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEGH-VLLKVRESELGFDFS 525

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IPED    + ++F        RR  G GLGL+I +  I+++ G + + S    
Sbjct: 526 VTDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGN 585

Query: 781 VTTINCRI 788
            +  +  +
Sbjct: 586 GSCFSFSL 593


>gi|328956406|ref|YP_004373792.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328672730|gb|AEB28776.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 614

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 166/415 (40%), Gaps = 32/415 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWM-FENLTVQVD-LETKYNTLVKVQGETID 441
           +E  + T  + +G  +  V V S    G + M   +L+ +V+  +    +  +     + 
Sbjct: 212 TEMTQQTIQMADGDYSGQVKVYSKDELGILSMAINDLSTKVEEAQETTESERRRLNSVLT 271

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N     +    +  ++ G  I  +      Y           
Sbjct: 272 HMTDGVIATDRRGVIVIINDKAMEMLNISQE-MALGVSILKVLKIDKEY--------TLR 322

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            ++ + DD         E+      E+++I             + D  + E         
Sbjct: 323 KLLENEDDMYFDFSND-EIPVTLRGEFTLIQRETGFISGIVCVLHDVTKQE--------- 372

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K D  +  FV +VS+ELR+PLT++  + + L             Q+++     +  ++
Sbjct: 373 --KIDNERKEFVSNVSHELRTPLTSMRSYLEALLDGAWKD-PEIAPQFLKVTQEETDRMI 429

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-----NNIRIKVISDGK 676
            ++ D+LDL+ +D+G   L+   + +N+L + V +     +        +  IK     +
Sbjct: 430 RMIKDLLDLSRMDSGKGTLDLEYLNVNELFDHVIKRFEMMIQSSDESSKDFSIKRNFTDR 489

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  +++Q+   I++NA+ +S  G T+       N   + S+ + G  IP+    
Sbjct: 490 QLWVEVDADKMIQVLDNIMNNAIKYSPDGGTITCGLVETNDSVVLSISDEGLGIPKRDLA 549

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +VF+RF        R   G GLGL+I +  ++ H G +   S++   TT    +P
Sbjct: 550 NVFDRFFRVDKARARSMGGTGLGLAISKEVVHQHKGKIWAESTEGKGTTFYISLP 604


>gi|95928336|ref|ZP_01311084.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135607|gb|EAT17258.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 867

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 175/408 (42%), Gaps = 28/408 (6%)

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET-------IDHLS 444
           W L  G  +      NP        ++++ Q + E      ++   E        +  L+
Sbjct: 475 WILGRGMVVSRDQQGNPL-RLTGTHKDISQQKNTEHALKKALQESEEARNNINAILTSLT 533

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +G+ V   D  I + N A + L   +E++ + G  +  I           DG      + 
Sbjct: 534 DGMIVSNRDHHITMINRAAQKLLDVDEHQ-AIGQLVETIV----------DGQVFSDELG 582

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           +    E+ +    +E++  S  E  +I    +         + ++   + +T   E    
Sbjct: 583 SILSQEKTTTTIDVEMMDQSRQEMRVIQARFSAIYDNESIPSGAITLLQDVTRSREMA-- 640

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              +K+ F+   ++ELR+PLT ++GF+DLL  S   S   ++ +Y++ IS+ S  L  +V
Sbjct: 641 --RLKSEFISTAAHELRTPLTAMLGFSDLLLESPDISA-EERREYLQIISSKSESLAAIV 697

Query: 625 NDILDLATVDAGIM-KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +D+LDL+ +++G +  L+   I L   L  + +       ++  +     +        D
Sbjct: 698 DDLLDLSRIESGRLITLDQKQIPLQQTLVGLIEQYRDSCPDH--QFITHLNDIDSMLYID 755

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             ++ Q+   +LSNA+ +S +G  + ++  R+   F+ ++ + G  +     + +FN+F 
Sbjct: 756 ENKMAQVIENLLSNAVKYSPEGGNISIETRREPDGFLLTIADQGIGMTPAQVERIFNKFY 815

Query: 744 SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                     G+GLG+SI +  +  H G + + S+    TT   R+P 
Sbjct: 816 RVDGTNTAVGGLGLGMSIAKHIVEAHQGEIWVESTINQGTTSYVRLPL 863


>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1702

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 123/244 (50%), Gaps = 14/244 (5%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             EA   A   K+ F+ ++S+E+R+P+  IIG TDL   ++   LN++Q +Y+  + +S+ 
Sbjct: 1074 KEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTE---LNAEQREYLTMVQSSAA 1130

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677
             LL ++NDILD + ++AG ++L+ S   L  +L E  +++A + H+  + I   I     
Sbjct: 1131 SLLTIINDILDFSKIEAGRLELDKSDFSLRTILYETLKTLAWRSHQKGLEIICDIIPDTP 1190

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFI--FSVKNNGSSIPE 732
               + D  RL QI + ++ NA+ F+++G  V L    +   NG+    FSV + G  IP 
Sbjct: 1191 DHLIGDPGRLRQIVTNLVGNAIKFTAEGE-VSLTVKLEDITNGEVTLAFSVADTGIGIPA 1249

Query: 733  DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RI 788
            +    +F  F         +  G GLGL+I    + L GG +   S     +  +   + 
Sbjct: 1250 EKLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVELMGGKLKAESIPGKGSRFDFIAKF 1309

Query: 789  PSKE 792
            P  +
Sbjct: 1310 PLGQ 1313


>gi|225387688|ref|ZP_03757452.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
           DSM 15981]
 gi|225046210|gb|EEG56456.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
           DSM 15981]
          Length = 810

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 103/505 (20%), Positives = 192/505 (38%), Gaps = 45/505 (8%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + D++  L + N  + EL              DE      +   L  Q + + W++   +
Sbjct: 36  LLDEHFTLIWANEFYYELIGWPK---------DEYEAKFHNRPDLYYQTDPEEWQKLSET 86

Query: 381 VYKSSETHKDTWHL------PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           V ++    ++ + L       NG  + V  ++      I  ++     +        + +
Sbjct: 87  VLQALAAGQEGYRLLSRIRRKNGDYVWVQFSARFAEEYIDGYQVAYSTLTNVDDLVKMQR 146

Query: 435 VQGETIDHLSEGVAV---FGPDGR-----IKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            Q  T + L  G         DG      +  +N  F   +     + +   + RN+   
Sbjct: 147 EQSVTYESLP-GFVAKYRIDADGEELYLALLSANSRFMEYFGEAGRKNADSLYNRNLREN 205

Query: 487 CSRYYNESDGWDL-----FAAIITSFDDERKSLQ--GTLELLSDSVLEYSIIPLPNAQTM 539
                 + D         F   + S D +   LQ   T     +    Y +I +      
Sbjct: 206 IEMLNGQRDRILAGEPLHFTMHVASRDGQALWLQVNATCVDWQEGSPVYLVIFIDITDVT 265

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                    +    AL +      +A+  K+ F+  +S+E+R+P+  IIG T +   +  
Sbjct: 266 ELREMQRKLIAQTEALKDALSVAEQANRAKSDFLSRMSHEIRTPMNAIIGMTTI--AAAY 323

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +    +E I  SS  L+ L+ND+LD++ +DAG M++++    L  ++  +   I 
Sbjct: 324 IEDRKRVEDCLEKIGYSSKHLMTLINDVLDMSKIDAGKMQISHEPFNLETIVESITSIIY 383

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RD 715
            +  +  +   V + D      + D  RL QI   +LSNA+ F+ KG TV L+     R 
Sbjct: 384 PQAEDKGLIFNVPLVDLINTVLIGDGLRLNQILLNLLSNAVKFTPKGGTVRLRIRQMWRR 443

Query: 716 NGDFI--FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
            G     F+V + G  + +D    +F+ F            G GLG+ I ++   L GG 
Sbjct: 444 AGRVRLSFAVSDTGIGMSQDFLSHIFDPFEQERVNAGQTYGGTGLGMPITKNLATLMGGT 503

Query: 772 VSISSSDEGVTTINCR----IPSKE 792
           +S+ S  +  TT        +P +E
Sbjct: 504 ISVKSKPDQGTTFTVELDFDLPEQE 528


>gi|189423458|ref|YP_001950635.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419717|gb|ACD94115.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1068

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 14/284 (4%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQ 574
            ++ LS++V E +         + T     +    ER   L +  +A   A+E K+ F+ 
Sbjct: 506 EIDALSNNVKEMAESLGQTFFELKTVNEQLEKRIEERTKELADAKQAAEAANEAKSRFLA 565

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+E+R+P+  I+G  +LLK S+   L   Q + + Y S S+  LL ++NDILD + ++
Sbjct: 566 VMSHEIRTPMNGIMGINNLLKQSQ---LTPDQRELLGYASDSADALLLIINDILDFSKIE 622

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
           A  ++L  S   L  L+  +         +  +R+    D +L   V  D+ RL Q+ + 
Sbjct: 623 ANKLELCPSVFRLGRLMESLCNMYQLVADKKGLRLVCDYDRELPELVTGDQDRLRQVLTN 682

Query: 694 ILSNAMDFSSKGSTV----ILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           +L+NA+ F+ +G        L ++  +G     F V ++G  I  +  + +F+ F     
Sbjct: 683 LLNNAIKFTRQGEVRLWVHRLSSSSADGMLRIAFQVTDSGIGIAPEKQERIFDMFSQADS 742

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              R   G GLGL+I +S + L GG + ++S+    +T    +P
Sbjct: 743 STTREFGGTGLGLAICKSLVGLMGGTIQVTSTPGVGSTFRVELP 786


>gi|332535352|ref|ZP_08411148.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035225|gb|EGI71733.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1104

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 9/251 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +    +  E+ L    E   +A E K+ F+  +S+E+R+P+  ++G  +++K ++   L
Sbjct: 566 HSSQQRIETEQKLVSAKETAEQAVEAKSEFLASMSHEIRTPMNGVLGMLNIIKQTQ---L 622

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q  ++E   +S+  LLN++NDILD + ++AG + +      L  LL EV +S A K+
Sbjct: 623 DLQQKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPRLLGEVVESFALKV 682

Query: 663 HENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGD 718
            +NN ++ + +    +   ++D  RL QI + ++ NA+ F+  G  VI   +    D   
Sbjct: 683 EQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTIDGEVVITARIDETTDGSF 742

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              S+ + G  I      S+F+ F        R   G GLGL+IV+    L  G VS++S
Sbjct: 743 LQCSIIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSVNS 802

Query: 777 SDEGVTTINCR 787
                +T +  
Sbjct: 803 MQGEGSTFSFT 813


>gi|229170167|ref|ZP_04297854.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
 gi|228613312|gb|EEK70450.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
          Length = 586

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 149/392 (38%), Gaps = 27/392 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 208 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 267

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 268 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 320

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            ++ +  FV +VS+E
Sbjct: 321 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IEQERREFVANVSHE 366

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 367 LRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 425

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 426 LMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNAL 484

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 485 KYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 544

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  I  HGG V   S +   TTI   +P
Sbjct: 545 LAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576


>gi|326792832|ref|YP_004310653.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326543596|gb|ADZ85455.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 583

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 159/384 (41%), Gaps = 28/384 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  +  Q+    +  T  K + E   +H+++GV  F   G +   N     +  
Sbjct: 217 GELTQSFNYMASQLSTTMEVITSEKNKLEKIFEHMADGVMAFNRQGVLIHVNSVCYEMIG 276

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                 +      NI         E +  +L A       D+  ++        D  L+ 
Sbjct: 277 ATSMAPNFEEVFENIG-------LEVNFEELLAGKPYEGADQTLTI-------GDRYLKM 322

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                 NA+     + V      ++          K D+++  FV +VS+ELR+PLT + 
Sbjct: 323 HFDVYLNAKKEADGLVVVIQDVTKQQ---------KLDQMRKEFVANVSHELRTPLTTVK 373

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            +T+ L    +         ++  +   +  +  LV D+L+L+ +D   ++L +  + L 
Sbjct: 374 SYTETLLDGAIDE-KETAMHFLGVMEKEADRMTALVQDLLELSRIDNKQIQLEFVRLNLK 432

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
            LL EV ++    + ++  +++V  D K   F+  D  R+ QI   ILSNA+ +S +  T
Sbjct: 433 PLLEEVLEAQYIHIIKHGHQLEVGYDKKEEYFIEGDLSRIRQILHNILSNAIKYSPEPGT 492

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + +   ++N   I  + + G  IPE+  + +F RF         +  G GLGLSI +  +
Sbjct: 493 LGVYMKKENAYVIVEITDTGMGIPEEDLERIFERFYRVDKARSRKMGGTGLGLSIAKELM 552

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            LHGG + I S     T +    P
Sbjct: 553 LLHGGDIKIESQLGQGTKVILNFP 576


>gi|283853339|ref|ZP_06370587.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571263|gb|EFC19275.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 923

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 13/297 (4%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            I+ S DDE  +L   +      +  Y   +  +   +T      + ++ + ++ L    
Sbjct: 331 RILVSGDDEINTLAQDINAYIREIDNYRTNLETIIFERTNDLQQKILENEQYQKELKLAK 390

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +   +A++ K  F+  V++E+R+PL +I G  D L ++   SLN  Q + +  I  SS  
Sbjct: 391 DLAEEANKTKTDFLAKVTHEIRTPLNSIKGMNDYLLST---SLNDDQRECLSIIKESSNH 447

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL +VND+LDL+ ++AG +   +    L  L+    + +    ++  + + V  +G    
Sbjct: 448 LLTIVNDLLDLSKIEAGQLVFEHIDFALKQLIESTIRILQPLANQKKLDLHVAYEGDADI 507

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGD---FIFSVKNNGSSIPED 733
            V  D  R+ Q+   + +NA+ F+  G    V   A +++ D      S+K+ G  I  +
Sbjct: 508 VVRGDPSRIRQVLFNLANNALKFTQTGTVGIVASVAWQESLDAYAITISIKDTGIGIAAE 567

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  FV + +   R   G GLGLSI    I L GG +++SS     +T    +
Sbjct: 568 ALQRIFQPFVQSDNSTSRKFGGTGLGLSICNQLIALMGGTIAVSSRPGQGSTFTFTL 624


>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 923

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 10/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    +    A + K+ F+ +VS+E+R+P+  IIG  DL   +    L+SKQ ++++ 
Sbjct: 261 RELEIAKDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADL---TMETDLSSKQREFIKI 317

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S  +LL L+NDILD + ++AG + L      L+ L++++      +M  +   + + 
Sbjct: 318 IISSGKVLLRLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVASQTELVID 377

Query: 673 S-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG---DFIFSVKNNG 727
              G     + D  RL Q+   I +NA  F+SKG  +I + A + N    + +F++K+ G
Sbjct: 378 IRPGVPQRIIGDPLRLRQVLVNITANAFKFTSKGEIIITVSADQINATKTEIVFAIKDTG 437

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPE++   +F  F        R   G GLGLSI +  +NL GG++   S  E  +T  
Sbjct: 438 IGIPEEVQPHLFEAFKQADGSTTRKYGGTGLGLSISKRIVNLMGGNIWFRSRPEDGSTFF 497

Query: 786 CRI 788
             I
Sbjct: 498 FTI 500


>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 765

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 19/289 (6%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            DE  SL   LE +  S+LE         Q     + +      +       +    A+ 
Sbjct: 198 QDELDSLLQALERIRLSMLE------DREQRRTVELALMREKEEKIETRRLVQEAEAANR 251

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+E+R+P+  +IG  ++L+ +   +L+  Q  Y+  I  S   L+N++NDI
Sbjct: 252 AKSQFIATMSHEIRTPMNGVIGMVEMLRDT---TLDDSQRHYLGIIERSGDSLMNIINDI 308

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
           LD + ++AG M L +    L +LL +  Q  +    + NI +   IS       + D  R
Sbjct: 309 LDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICSISPNTPKQLMGDPTR 368

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFN 740
           L Q+   ++ NA  F+S+G  + ++A + N          FSV+++G  I  +  + +F+
Sbjct: 369 LKQVLVNLIGNAFKFTSEGH-IYVEARQVNASDADLPMIHFSVEDSGIGIESNQQEKLFD 427

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            F        R   G GLGL+I +    + GG + + S ++  +T    
Sbjct: 428 AFCQADGSTTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKAGSTFWFS 476


>gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1274

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 160/348 (45%), Gaps = 12/348 (3%)

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            GR  + +  + S   T    +    H+R           E  G        T+   E+  
Sbjct: 769  GRSYVVDDIYNSDMTTCHTDILAQFHVRANVIMPLLCGAELWGLLCIHQCATTRHWEQSE 828

Query: 514  LQGTLEL---LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +  T +L   L+ ++ + S++     +            ++ + L   N+ L +A  +K+
Sbjct: 829  IDFTQQLATQLAIAIQQASLVEQLQQELAERQQAELKLTQSNQQLAISNQELARATRLKD 888

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+ ++S+ELR+PL  I+G T+ L+    G +N KQ + +E I  SS+ LL+L+NDILD+
Sbjct: 889  EFLANMSHELRTPLNAILGMTEGLQEGVFGMINDKQFKALETIERSSSHLLDLINDILDV 948

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
            A ++AG +KL+ + I +  L       I  +  +  I++++     L     D +R+ Q+
Sbjct: 949  AKIEAGQIKLDCTAISVAALCQSSLVFIKQQALQKRIQVEIKIPLNLPDLFVDERRIRQV 1008

Query: 691  FSKILSNAMDFSSKGSTVILKAARDNGDF-------IFSVKNNGSSIPEDMCKSVFNRFV 743
               +L+NA+ F+ +   + L+  + + D          +V + G  I ++    +F  F+
Sbjct: 1009 LINLLNNAVKFTPETGRISLEVTQVSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFI 1068

Query: 744  SNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                    Q  G GLGL++V+  + LHGG V ++S     +     +P
Sbjct: 1069 QIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTSELGVGSCFTIELP 1116


>gi|317486464|ref|ZP_07945289.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316922267|gb|EFV43528.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 907

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 116/640 (18%), Positives = 232/640 (36%), Gaps = 71/640 (11%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
           + +   K + D  D  +   D+ G  ++AN       +  G      IG+         +
Sbjct: 8   SSLDALKFVVDMADVPMVLTDEDGRFVFAN---GHTLDIVGKAEDACIGKPLASLLSVSR 64

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-----DVSKEITVNDQ 304
           +   + S            L     + Y++  +     ++G+       DV+      + 
Sbjct: 65  RPRFNRSGK-------APVLFTREGRFYEVDGISRFHTKSGMLELSRIHDVTSTYRDKEM 117

Query: 305 LTHTYEILHNLTVAIAIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           L        N  + I  F  D++    + +  F  +       + T P        +R +
Sbjct: 118 LEFLKS---NAPIGIFQFVMDEHFSFFYVSEGFCAMHGYTQDQMKTAPD-------IRGS 167

Query: 363 NKL-PEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGGTIWMF 416
             + P+ L  +       +   KSS   +      +G+   ++          G  ++ +
Sbjct: 168 ELIHPDHLQRFNDLIRTAYEDGKSSVGFEMKVIRRDGKVRWLLTQCSFVKTADGTIVYGY 227

Query: 417 -ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             + T   ++E K   +  V   T++H  E + +           PA R  +        
Sbjct: 228 VSDCTDLKNMEEKTKNVQDVCRFTVNHDYEWILLVDI--------PADRYEYFFSGRNSM 279

Query: 476 PGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            G+ ++ + +   R  +E+    D   A    F  ER + +     LS   L+Y ++ + 
Sbjct: 280 IGSGMQGVFSELVRLRSETVVHPDDVEAYRAFFKPERLAWENGTPGLSHE-LKYRVL-MG 337

Query: 535 NAQTMLTF-----------------VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           N Q                       +V +  R +  L     A  +A+  K+ F+  +S
Sbjct: 338 NGQARWHCLRAYLFDPVRRMLLFCAKDVEEEERQKATLRMALVAAEQANHAKSEFLSRMS 397

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +++R+P+  IIG   +           + S+ +  I+ SS  LL+L+ND+LD+A +++G 
Sbjct: 398 HDIRTPMNAIIGMAAI--AGMNVGNPERLSECLNNIALSSRFLLSLINDVLDVAKIESGK 455

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILS 696
           M L       ++L++ V            I   + +   L    V D  R+ Q+   +LS
Sbjct: 456 MSLASEPFDFDELVSSVSSFTYGSAVAKGIIFNLFASPLLEKIYVGDPLRIKQVLMNLLS 515

Query: 697 NAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQ 750
           NA+ F+ +   +                 F + +NG  + +   + +F  F      +  
Sbjct: 516 NALKFAPEKGRIEFNITPVQKVGHRELVRFVISDNGIGMSKSFQERMFQPFEQEMTDQRG 575

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGL+IV SF+ L  G + + S     ++ +  IP 
Sbjct: 576 LSGSGLGLAIVRSFVQLMDGTIRVESEQGKGSSFSVDIPL 615


>gi|220907505|ref|YP_002482816.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864116|gb|ACL44455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 882

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 108/565 (19%), Positives = 195/565 (34%), Gaps = 76/565 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +             +++N  + IA++D+       N++  ++  + LA L    +  EL
Sbjct: 175 QEIRERQSAHVLLDTLINNAPIGIAVWDEQLRYVQLNQALADMNGLPLA-LHAGKTIAEL 233

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW- 414
           L  + S N         T  E +     S ET        N   L      +  GG  W 
Sbjct: 234 LPGV-STNVTESLRQVLTRAEPLLQQEASGETPAAPGKQRN--WLVSYFPIHLPGGLTWA 290

Query: 415 --MFENLTVQVDLETKYNTLVKV---------QGETIDHLSEGVA----------VFGPD 453
             + E +T +   E     L  V         +   + +L++ +           +F P 
Sbjct: 291 GAICEEITERKQREAAQRILASVSAALVTSLDEQTILTNLTQLLVPALADYCLFDIFSPQ 350

Query: 454 G---RIKLSNPA------FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           G   R+   +        F           +    I            +    D    I 
Sbjct: 351 GSLERLVWHHRDLPQSLWFSQEQNFIPAPSNIHHPILQTIERRQPLLLQEVNPDWLDRIA 410

Query: 505 T-----SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RA 554
                 +F  + +     +  LS    +   + L        F N  D   AE      A
Sbjct: 411 APSQQSAFPWQSQVRSLLILPLSARNRQLGALTLALTDASQRFYNTIDLSLAEDLAYRAA 470

Query: 555 LTEKNEALRKA----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           L   N  L       + IK+ F+  +S+ELRSPL  I+G+  +L   ++    ++Q+  +
Sbjct: 471 LALDNAQLYYHAQEANRIKDEFLAVLSHELRSPLNPILGWAKILLNRRVDEPTTRQA--I 528

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  ++ I + L++D+LD++ +  G + L  + + L  ++    +++        I+I+
Sbjct: 529 SIIERNAKIQIQLIDDLLDVSRILKGKLSLTITDVDLKAVITAAIETVRLAAEAKQIQIQ 588

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------------- 717
                + G    D  RL Q+   +LSNA+ F+  G  + ++                   
Sbjct: 589 TRFLAEEGLVRGDVGRLQQVIWNLLSNAIKFTPSGGRIEVRLESGAQGSEGLNPASPSQL 648

Query: 718 ---------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
                        SV + G  I  +    +F+ F        R   G+GLGL+I    I 
Sbjct: 649 FPVLESASPSIKISVIDTGKGITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIARHIIE 708

Query: 767 LHGGHVSISSSDE-GVTTINCRIPS 790
           LHGG ++  S  E    T    +P 
Sbjct: 709 LHGGTIAAESPGEAKGATFTVHLPL 733


>gi|296878312|ref|ZP_06902320.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
 gi|296430610|gb|EFH16449.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
          Length = 429

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 24/365 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L       +  +S G+     +G I L N   + + K+E N+L  G +I  +  
Sbjct: 80  EVQYKHLQ--LKSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK 137

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                  E +        I S D+E       +    D V +  + P+    T    +  
Sbjct: 138 -------EEEILKQILRFIGSKDNE----TANITTKDDIVYKIKVDPVYLQNTNNVIIGS 186

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             ++              K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++
Sbjct: 187 IVNIE-------DITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR 239

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            ++++E I + S  L  L++DIL L+ V+     L    +V+ D+  EV +       E 
Sbjct: 240 -NRFLEIIESESDRLKRLIDDILLLSFVE-NKDTLLMENVVVYDVFKEVYEITQHSASEK 297

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI +    D K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +
Sbjct: 298 NIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVID 357

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP++  + +F RF        R   G GLGL+I +  +    G + + S     + 
Sbjct: 358 NGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSE 417

Query: 784 INCRI 788
               I
Sbjct: 418 FIVTI 422



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V  +      IL +++  I   D N  +   N    E+ + +   L    + + +   
Sbjct: 79  EEVQYKHLQLKSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVV--- 135

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           ++    L + L +   K+N  +   + +   D  +      +++  T+N   G+I   E+
Sbjct: 136 IKEEEILKQILRFIGSKDNETANITTKD---DIVYKIKVDPVYLQNTNNVIIGSIVNIED 192

Query: 419 LTVQVDLE 426
           +T +V LE
Sbjct: 193 ITKKVKLE 200


>gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 946

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 120/737 (16%), Positives = 255/737 (34%), Gaps = 102/737 (13%)

Query: 133 KLRKEGQSFDLVAETQNDCAI-KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
           K+R  G    ++        I  + G +  +   +R  + + +     E     + L   
Sbjct: 83  KIRDIGAGLRIILFVSEGILISHLIGNLRSAQEKIR-KNFEKLQVTETEIKDLNQTLQRR 141

Query: 192 ISVFKVLFDSLDF-LVWHRDQAGDILWANISYKKNTETEGIVFQKAI------------- 237
           ++  + LFD++   +    D    ++  N ++    +        A+             
Sbjct: 142 VNELQTLFDTIPINIAIAEDIDCRVVRLNPAFSHLLKMPKNANASAVMLSEHPDPPFTVY 201

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--------VRVLNSFGEA 289
              ++L  E + +  +S   +E    +    +   + K + +          + N  G  
Sbjct: 202 QNGQRLTGENLPQMYVSKHGVE--LRDIEIEIVRKDKKVFNLYGHAIPLFDELGNPRGSV 259

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           G+ +D+S    +   L    E   +     A F+    +        EL+ +  A++   
Sbjct: 260 GVYVDMSDRKRIEMALYKLVEY--SKITGSAFFETVVRVV------AELFNVRYAYVGEL 311

Query: 350 -PSNDELLEFLRS--ANKLPEQLNWK---TWKENIFSVYKSSETHKDTWHLPNGQTLH-- 401
            P+    ++ L +    +L + + +    T  E +          + +   P+   L   
Sbjct: 312 LPTYPPRIKTLAAWINGQLSDNIEYDLCGTPCEQVIKQGTCLYRRQVSNFFPDDTLLQEL 371

Query: 402 ----VIVTS--NPRGGTIWMFENL----------------------TVQVDLET---KYN 430
                + T   N +G  + +   L                        ++  E    +  
Sbjct: 372 GIESYLGTPLKNAQGEVLGILNVLHDEPLDESLNPEALLEIFAGKTAAELQREQAIAELR 431

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +     ++ + + V      G++   N  +         ++                
Sbjct: 432 NSEERYRYLVESIPQLVWTADSQGKVMDVNQRWSEFTGLTLVQVQTQG--------WETV 483

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI---IPLPNAQTMLTFVN--- 544
            +  D   L    I + ++            +D V  + +   +PL N +  +       
Sbjct: 484 VHPEDITTLNRKWIIAQENATNYQAEGRMRRNDGVYRWHLHQAVPLKNNRGKIIKWFGTA 543

Query: 545 ---------VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                        ++         E   +A+ IK+ F+  +S+ELRSPL  I+G+T LL+
Sbjct: 544 TDIENAKQLEQQRLQLLEQERTVREKAERANRIKDEFLSILSHELRSPLNPILGWTQLLQ 603

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T KL     +  + +  I  +  +   L++D+LD+A +  G + LN + + L+  +    
Sbjct: 604 TKKLE--EQQVEEALAVIERNVKLQTQLIDDLLDMAKILRGKITLNMTPVDLSSTIKAAI 661

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +       NI +KV           D+ R+ QI   +LSNA+ F+ +G  V++   + 
Sbjct: 662 EVVRMAAERKNISLKVNLSNN-CYIKGDQGRIQQIIWNLLSNAIKFTPEGGKVMINLEQV 720

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           N     +V + G  I  +    +F  F        R   G+GLGLSIV+  ++ HGG + 
Sbjct: 721 NQQVQITVTDTGKGIDPEFLPHIFESFRQEDVSITRHYGGLGLGLSIVKYLVDAHGGTIV 780

Query: 774 ISS-SDEGVTTINCRIP 789
             S  ++   T    +P
Sbjct: 781 ADSLGEDKGATFLITLP 797


>gi|328555723|gb|AEB26215.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens
           TA208]
 gi|328914109|gb|AEB65705.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens LL3]
          Length = 611

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 159/416 (38%), Gaps = 32/416 (7%)

Query: 385 SETHKDTWHLPNGQTLH-VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETID 441
           S+  K    L  G     V    +   G +   F +LT ++ D +       +     I 
Sbjct: 211 SDMRKQAMELAKGNFSRKVRKYGHDEIGQLATTFNHLTRELEDAQAMTEGERRKLSSVIA 270

Query: 442 HLSEGVAVFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           ++++GV     +G I L N PA   L  + E  L               + +  +  D  
Sbjct: 271 YMTDGVIATNRNGAIILLNSPALELLNVSRETALEMPITSLLGIKENFTFEDLVEQQDSM 330

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              I   DDE   L+          + +S+I   + +       + D    E        
Sbjct: 331 LLEIDR-DDETTVLR----------VNFSVIQREHGKIDGLIAVLYDVTEQE-------- 371

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              K D  +  FV +VS+ELR+PLT +  + + L      +      +++      +  +
Sbjct: 372 ---KLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWEN-KEIAPRFLMVTQNETERM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + LVND+L L+  D+   + N   I +   ++ +         E ++        +    
Sbjct: 428 IRLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFE-MTKEQHVEFIRELPDRNLYV 486

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSV 738
             D+ ++ Q+   I+SNA+ +S +G  V      +  +     SVK+ G  IP+   + V
Sbjct: 487 EIDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKV 546

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF        R   G GLGL+I +  +  HGG +   S +   T I   +P KE
Sbjct: 547 FDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLPYKE 602


>gi|89093662|ref|ZP_01166609.1| histidine kinase response regulator hybrid protein [Oceanospirillum
           sp. MED92]
 gi|89082058|gb|EAR61283.1| histidine kinase response regulator hybrid protein [Oceanospirillum
           sp. MED92]
          Length = 670

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 166/386 (43%), Gaps = 19/386 (4%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++    D E +++ L ++  E  D     +++  P+ +   S     +   + +      
Sbjct: 21  DILDSAD-EKEFDDLTQLASEICDTPIALISLIDPERQWFKSRVGLDATETSRDIAFCSH 79

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             ++           ++   D    ++T   + R      L   S   L  +I  + N  
Sbjct: 80  AILQEDVFEVEDTLKDARFAD--NPLVTGSPNIRFYAGAPLITPSGLAL-GTICTISNEP 136

Query: 538 TMLTFVNVT------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
             LT           + V +   L +K + L  A++ K+ FV +VS+E+R+P+  ++G  
Sbjct: 137 KTLTDWQRNALVVLRNEVISRLELRKKIKQLESANQYKSIFVSNVSHEIRTPMNGVMGLI 196

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLL  +    LN KQ +Y + I  S   LL ++ND+LDL+ V+AG + +  +   L +++
Sbjct: 197 DLLLET---PLNDKQLRYAQAIKRSGDSLLRVINDVLDLSKVEAGKLTIEKAEFNLGEVV 253

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----ST 707
           +++ +  +    E  + ++     K   F+ D  RL QI + +LSNA+ F+ KG      
Sbjct: 254 DDLTECFSPLATEKKLELRTDIQLKSDRFIGDHYRLKQILNNLLSNAIKFTDKGWTALRI 313

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
            ++    D     FSV + G  + E     +F RF        R   G GLGLSI +  +
Sbjct: 314 KVVSETDDQATLKFSVSDTGLGLSEKQQSQLFKRFQQANETITREFGGSGLGLSICKQLL 373

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L  G + + S     +T    +P +
Sbjct: 374 ALMDGDIGVKSEPGKGSTFWFTLPLQ 399


>gi|172036328|ref|YP_001802829.1| sensory transduction histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697782|gb|ACB50763.1| probable sensory transduction histidine kinase [Cyanothece sp. ATCC
            51142]
          Length = 1317

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 195/481 (40%), Gaps = 45/481 (9%)

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL--PEQLNWKTWKENIFSVYKSSET 387
            + N+    + +ID A L   P + ELL+  +    L  P  +  K W   I   Y + + 
Sbjct: 862  YRNQEVFWVSDIDTAQLT--PCHRELLQQFQVKALLTVPVFVGEKLW--GILGAYDNQKP 917

Query: 388  HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
                W+      L  +      G  +   E L    +      T +      +D+L +G+
Sbjct: 918  R--YWYKREIDLLKQVGNQL--GVAVHQSELLRQTQEQSETLQTTLADLNAIVDNLGDGL 973

Query: 448  AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
             V    GRI   NP+  S++      L  G  + +I              +L   +    
Sbjct: 974  LVADIYGRITRYNPSLVSMFNVTLPLL--GKQLLDIFPE-----------ELSPLLERKK 1020

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             D++K +   + L ++ + +     +   Q         +       L       R+ + 
Sbjct: 1021 LDQKKVVAVEIPLSNNRIGQALASNIIKEQV-----ESGEEYLGVVILIRDITKEREMER 1075

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLL--------------KTSKLGSLNSKQSQYVEYI 613
            +K +F+  VS+ELR+PLT+I+GF+ L+              K  K+     +  Q ++ +
Sbjct: 1076 MKRNFLSMVSHELRTPLTSIVGFSSLIRDKLHAVVFPQIQEKDKKVDKAVERIKQNLDIV 1135

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
               +  L  LVND LD+  +++G + L+   +  + +L     S A    ++++ +    
Sbjct: 1136 VFEAERLTKLVNDFLDMTKIESGKITLSLFPVKPSTVLTWAIASTAPLFEDSSVELIEDF 1195

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +L + + D  RL+Q+F  ++SN   F+  GS V      D+ + + S+ + G  I E+
Sbjct: 1196 PEELPTILGDEDRLIQVFVNLISNGFKFTETGS-VTCHGEVDHDNLLISITDTGIGIAEN 1254

Query: 734  MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                VF  F    +    + +G GLGLSI +  I  HGG +  +S  +  +T    +P  
Sbjct: 1255 DYSKVFEPFQQVGNILTNKPKGTGLGLSISKQIIEQHGGKIWFTSERQKGSTFFVSLPLA 1314

Query: 792  E 792
            +
Sbjct: 1315 K 1315



 Score = 44.5 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 88/253 (34%), Gaps = 28/253 (11%)

Query: 200  DSLDFLVW-----HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE-EIKKRMI 253
            D+ +  +W        Q G      + +  + +T  +         R+L ++ ++K  + 
Sbjct: 842  DTAEPPIWEDTYLQETQGGRYRNQEVFWVSDIDTAQLTPCH-----RELLQQFQVKALLT 896

Query: 254  SSSALEKNFCETVSTLEHGNNKSY---KIVRVLNSFGEAGIAIDVSK--------EITVN 302
                + +     +   ++   + +   +I  +     + G+A+  S+          T+ 
Sbjct: 897  VPVFVGEKLWGILGAYDNQKPRYWYKREIDLLKQVGNQLGVAVHQSELLRQTQEQSETLQ 956

Query: 303  DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
              L     I+ NL   + + D    +  +N S V ++ + L  L       +LL+     
Sbjct: 957  TTLADLNAIVDNLGDGLLVADIYGRITRYNPSLVSMFNVTLPLLGK-----QLLDIFPEE 1011

Query: 363  NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
               P     K  ++ + +V      ++    L +      + +     G + +  ++T +
Sbjct: 1012 -LSPLLERKKLDQKKVVAVEIPLSNNRIGQALASNIIKEQVESGEEYLGVVILIRDITKE 1070

Query: 423  VDLETKYNTLVKV 435
             ++E      + +
Sbjct: 1071 REMERMKRNFLSM 1083


>gi|218246315|ref|YP_002371686.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166793|gb|ACK65530.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 950

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 18/259 (6%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              + +   +   K + +++ ++ KN F+  + +E+R+PL  + G T LL  +    LN 
Sbjct: 263 HFHTFKELESQMAKQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDT---PLNP 319

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q ++V  I +S   LL ++N+ILD + ++A  ++L      L   + EV +    +  +
Sbjct: 320 QQEEFVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQ 379

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------- 714
             + +  + +     + V D  RL QI + +L NA+ F+ KG  V+  +A+         
Sbjct: 380 KQLELAYLIEPNTPSAIVGDSTRLRQILANLLGNAVKFTEKGEVVVYVSAQPLPNSDRTD 439

Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               N +  F+VK+ G  I    C  +F  F        R   G GLGL I +    L G
Sbjct: 440 KTLANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMG 499

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S++   +T    I
Sbjct: 500 GKMWVHSTEGKGSTFYFTI 518


>gi|254525181|ref|ZP_05137236.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
 gi|219722772|gb|EED41297.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
          Length = 661

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 98/458 (21%), Positives = 178/458 (38%), Gaps = 35/458 (7%)

Query: 356 LEFLRSANK-LPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGG-- 411
           L+ +R     L E  + + W      V +S    + +      G++  V      R G  
Sbjct: 51  LKDVRGQRMSLLEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGED 110

Query: 412 -TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
               +F ++T +  +E +            D L   V V    G  +  N AF   +  +
Sbjct: 111 KVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGD 170

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS----DSVL 526
           E           +     R     D   +F   +      ++S+   +           L
Sbjct: 171 ET---------RVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWL 221

Query: 527 EYSIIP----------LPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQ 574
           E +  P          L  +   +T     +  R E  ++      A      +K+ F+ 
Sbjct: 222 EMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLA 281

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+ELR+PLT I+G+++LL         S   + +  I+ S+     L++D+LDL+++ 
Sbjct: 282 TLSHELRTPLTTILGWSELLLQRV--DNTSPLYKGLNVIANSAGAQKRLISDMLDLSSML 339

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            G ++L    + LN LL E   +         + + +    +    + D  RL Q+   +
Sbjct: 340 LGKVQLEVEVLDLNLLLGEAIGAQELVAEGKALDVHLQLPEQPSLVLGDATRLQQVLWNL 399

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           LSNA+ F+     + L+   D   ++ +V + G  I  +    +F+RF        RR  
Sbjct: 400 LSNAIKFTPAEGRIDLQLQADGNHWVITVHDTGDGIAPEFLHHLFSRFRQADGTTTRRHG 459

Query: 753 GVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           G+GLGL+IV+  + LHGG V+ +S       T   R+P
Sbjct: 460 GLGLGLAIVQQLVELHGGTVTAASEGHGHGATFTVRLP 497



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 73/223 (32%), Gaps = 32/223 (14%)

Query: 119 LKFHHYIKLSKATEKLRKEGQS--FDLVAETQNDCAIKIE----GRVSGSCAFLRILSLD 172
           L+ +H     +   ++ + G+   F++ A      +  ++    GR       +    + 
Sbjct: 62  LEPNHEEDWFRIYGEVARSGRPAQFEMEARAL-GRSFAVDAVRVGRPGEDKVGILFFDIT 120

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
                  E      +       F  L D L   VW  D+ G   + N ++ +    +   
Sbjct: 121 ARKQMEVELGESEAR-------FSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETR 173

Query: 233 FQKAIGESR------KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI------V 280
             + +           +F+ E+++ + +  ++             G  +  ++       
Sbjct: 174 VPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARR---ADGQWRWLEMNARPRFS 230

Query: 281 RVLNSFGEAGIAIDVSKEITV---NDQLTHTYEILHNLTVAIA 320
           R+    G AG + DV++   +    ++L  +     +    +A
Sbjct: 231 RMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMA 273



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 84/251 (33%), Gaps = 37/251 (14%)

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           R      +  N +++++T  + +  Q+         +E+  +     +   +     +  
Sbjct: 32  RAVDYRFIEVNDAFERHTGLKDVRGQRM-SLLEPNHEEDWFRIYGEVARSGRPAQFEMEA 90

Query: 269 LEHGNNKSYKIVRV--LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IF 322
              G + +   VRV          +  D++    +  +L  +      L   +     + 
Sbjct: 91  RALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVL 150

Query: 323 DQNRYLQFHNRSFVELWEIDLAFL-------ATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           D+  + +F N +F E +  D   +         +P +  + E+        E       +
Sbjct: 151 DERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEY--------ELQEALKAQ 202

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-------NLTVQVDLETK 428
            ++ ++ ++           +GQ   + + + PR   +  F        ++T + ++E  
Sbjct: 203 RSMHALVRA--------RRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELA 254

Query: 429 YNTLVKVQGET 439
              L++ +   
Sbjct: 255 REELLQSERAA 265


>gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 572

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A  +  +   +A+  K+ F+  +S+ELR+P+  +IGF  LL  +++   + +Q+ +VE I
Sbjct: 184 AFLKAKDEAEQANMAKSEFLAMMSHELRTPMNGVIGFASLLLETQM---DDEQTDFVETI 240

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672
             S   LL+++NDILD + ++AG  +L   +  L + L EV         E  +++ +  
Sbjct: 241 RNSGDSLLSIINDILDFSKIEAGREELELVSFNLQNTLQEVISITTPIASEKELKLDLEY 300

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNG 727
           SD      + D  +L Q+   ++SNA+ F+  G  V + A  ++          +V + G
Sbjct: 301 SDALPEYVIGDPGKLRQVVLNLVSNAIKFTPDGG-VTITATPNSNSDTHSMVRIAVSDTG 359

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +++ K +F+ F       +R   G GLGL I +    + GG ++I SS    +T N
Sbjct: 360 IGISKEVQKRLFHPFTQADSSTRRKHGGTGLGLVISKRLSEMMGGDITIDSSPGEGSTFN 419

Query: 786 CR 787
             
Sbjct: 420 FT 421


>gi|330796122|ref|XP_003286118.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum]
 gi|325083937|gb|EGC37377.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum]
          Length = 1758

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 92/397 (23%), Positives = 171/397 (43%), Gaps = 37/397 (9%)

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             I  F  +   VDL+      +++Q   +  +S    V   DG I  +NPAF S+++ + 
Sbjct: 684  VILTFYTILSSVDLKEIERKELRIQS--LFRISNEALVVHKDGLITDANPAFESMFQIKL 741

Query: 472  NRLSPGTH--IRNIAATCSRYYNES-----DGWDLFAAIITSFDDERKSLQGTLEL---- 520
              L       I          +        D  D+     T  D   ++ Q  +      
Sbjct: 742  QDLLYPIQSGIWEFLPALEGMFEPGASKTFDNSDIGVIETTGIDSSGRTFQVEVRTNKAT 801

Query: 521  -LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
               + V   SII +   + ++         +AE A           +E K  F+  VS+E
Sbjct: 802  YGGEPVDVISIIDITGRKQLMEAD--YALRKAEAA-----------NEAKVIFLTTVSHE 848

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            LR+P+  ++   D+L+ +   +L+S Q +++  I  S   LL+L+NDILD + ++AG M+
Sbjct: 849  LRTPINGVLASADILERT---TLDSTQKEFLNCIKLSGNYLLDLINDILDYSKIEAGKME 905

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
            +      +  +L+   + ++  ++E  + + V  D  +   +  D +R+ QI    LSN+
Sbjct: 906  IIKYDFSILKMLDNGIRIVSKNIYEKGLELCVFVDPNVPVIINGDGRRIKQILLNFLSNS 965

Query: 699  MDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRR 752
            + F+++G  +I +K   +N         V+++G  I  +    +F  F         + +
Sbjct: 966  IKFTNEGQIIIRVKLESENEKESLIKIDVEDSGIGIKPEHLGQLFASFSQIDSGNSRKYQ 1025

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGLSI +    + GG V + S     +T +  IP
Sbjct: 1026 GTGLGLSISKRLCKMMGGDVHVKSEFGIGSTFSFTIP 1062



 Score = 42.2 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 13/147 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
               +  +      +      A+ +  ++  +   N +F  +++I L  L   P    + 
Sbjct: 696 DLKEIERKELRIQSLFRISNEALVVH-KDGLITDANPAFESMFQIKLQDLLY-PIQSGIW 753

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGG--- 411
           EFL +   + E    KT+  +   V +++          +G+T  V V +N    GG   
Sbjct: 754 EFLPALEGMFEPGASKTFDNSDIGVIETTGIDS------SGRTFQVEVRTNKATYGGEPV 807

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGE 438
            +    ++T +  L      L K +  
Sbjct: 808 DVISIIDITGRKQLMEADYALRKAEAA 834


>gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
 gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
          Length = 1053

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 156/379 (41%), Gaps = 19/379 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +     ++    I+     VA+    G I L N    + +    +       +
Sbjct: 147 EIAKRTKELAVSEELSRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGYTADEALGQPLL 206

Query: 481 ----RNIAATCSRYYNESDGWDLFAAIITSF-DDERKSLQGTLELLSDSVLEYSIIPLPN 535
                 +    +         D    +  +F + E  +  GTL  +    L  SI  L  
Sbjct: 207 TLLKMALPPELAAALTLPLRVDQRQLLNEAFYEAETYTRDGTLVPID---LGVSIFELNG 263

Query: 536 A-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q  +   +VT    AE+ L E       A E+K+ F+ ++S+E+R+P+  IIG + L 
Sbjct: 264 QCQAAMFLRDVTARKAAEQELNEAKAKAEDAVEVKSMFLANMSHEIRTPMNAIIGMSHLA 323

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L  KQ  YV  I +S+T+LL ++NDILD + ++AG + + +    L ++L+ V
Sbjct: 324 LKTE---LTPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNV 380

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
                 K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G   V ++ 
Sbjct: 381 SMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQGEISVSVQV 440

Query: 713 ARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                     +F V + G  + E   +++F  F        R   G GLGLSI    + L
Sbjct: 441 GERQPGRIKLLFHVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVEL 500

Query: 768 HGGHVSISSSDEGVTTINC 786
             G +S++S  +  +    
Sbjct: 501 MEGEISVTSQPDMGSCFTF 519



 Score = 41.1 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-- 353
           +KE+ V+++L+ T  I+     ++AI D    +   N++ +  +          P     
Sbjct: 152 TKELAVSEELSRT--IIEGAPSSVAIIDSQGLILLWNKTAITTYGYTADEALGQPLLTLL 209

Query: 354 --ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTS 406
              L   L +A  LP +++ +      F        ++   +  +G  + +     I   
Sbjct: 210 KMALPPELAAALTLPLRVDQRQLLNEAF--------YEAETYTRDGTLVPIDLGVSIFEL 261

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           N +        ++T +   E + N       + ++
Sbjct: 262 NGQCQAAMFLRDVTARKAAEQELNEAKAKAEDAVE 296


>gi|58616936|ref|YP_196135.1| putative sensor protein [Ehrlichia ruminantium str. Gardel]
 gi|58416548|emb|CAI27661.1| Putative sensor protein [Ehrlichia ruminantium str. Gardel]
          Length = 477

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 89/416 (21%), Positives = 176/416 (42%), Gaps = 33/416 (7%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VAVFGPDGRIKLS 459
            ++  +    GT   + +L +++  E           + +D + +  V ++  DG +  S
Sbjct: 64  QLLAKAPSHVGTNAYYMDLLIRLRAE---------FLKALDGVEDFHVILYNVDGNVIFS 114

Query: 460 NPAFRSLWKTE-------ENRLSPGTHIRNIAATCS---------RYYNESDGWDLFAAI 503
           N +   + + +        N L  G +I +   + +            ++S    +F  I
Sbjct: 115 NKSSDEISEQDLLLRSSDMNSLLRGEYIDHKVKSSANVVSIFPIFPLGDKSHHPLMFLKI 174

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEA 561
           I + ++    +     +    V+   II +     +        S +      L E  E 
Sbjct: 175 IKNSENLSSFIVDFYTIFLVIVVLIIIIFVVVTWCIYYRNTRMLSKQYDVNLKLKEAKEM 234

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTIL 620
             + +  K+ F+ +VS+ELR+PL +IIGF++++K+  LG + NS   +Y+  I +S   L
Sbjct: 235 AEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPIENSDYKEYINDIHSSGVHL 294

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L+L+NDILD +  +A  + + +    L  +++     +  +  +  + ++ +        
Sbjct: 295 LSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPRAEQAKVHLEKVLPSDKVVM 354

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSV 738
           VAD +R+ Q+   +LSN+M F+ +  TV L      ++   I  + + G  I +     V
Sbjct: 355 VADPKRIKQVIINLLSNSMKFTPENGTVKLVVRYNLEDKLIIIEITDTGIGIAQQDLYKV 414

Query: 739 FNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + F  V + H  +  G GLGL + +  + L  G   I S     T I    P  E
Sbjct: 415 MSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSEPNSGTVITLTFPYTE 470


>gi|78484412|ref|YP_390337.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira
           crunogena XCL-2]
 gi|78362698|gb|ABB40663.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira
           crunogena XCL-2]
          Length = 721

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 8/244 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  +    ++++K+ F+ ++S+E+R+P+  IIG T LL  +   SL  +Q      
Sbjct: 201 KELNQAKQEADASNQLKSEFLANMSHEIRTPMNGIIGMTGLLLDT---SLKKEQRDLTLT 257

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+  LL ++NDILD + ++AG M+LNY ++ L   L+ V + +A+      + +   
Sbjct: 258 VKESAESLLAIINDILDFSKIEAGKMELNYESVKLVPFLDGVMEMVASSAQSKGLNLAYF 317

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA-ARDNGDFIFSVKNNGSS 729
            D  L      D  RL Q+   +LSN + F+  G   + + A   D+    F V + G  
Sbjct: 318 IDPILPAEIETDGVRLRQVLINLLSNGIKFTDHGYVYLTVSALDSDSNRLQFKVTDTGIG 377

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I E+    +FN F        R   G GLGL+I +  ++L GGH+S+ S+          
Sbjct: 378 ISEEGQAKLFNAFSQVDGSSMRVFGGTGLGLTISKQILSLLGGHISVKSALGKGACFCFD 437

Query: 788 IPSK 791
           IP +
Sbjct: 438 IPYR 441


>gi|212710083|ref|ZP_03318211.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
 gi|212687290|gb|EEB46818.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
          Length = 1042

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 168/368 (45%), Gaps = 31/368 (8%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                    I     G+ V   + + ++ +N   +              +  NI  T S 
Sbjct: 354 ESEAFNQTLIATTPIGLCVIDTETQDLRFANELAK--------------YWLNIPNTDSP 399

Query: 490 YYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            ++  +  +L + +I+  +      KS +  L ++S +   Y   P+     +  F ++T
Sbjct: 400 -HDSMEYNELLSRVISEQEKVTTVLKSGEHVLYIVSTAT-HYQQRPV----ILCAFTDIT 453

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                E+ L        +A++ K++F+  +S+E+R+PL  IIG  +LL+ +   +L+ KQ
Sbjct: 454 IQAETEKQLNHAKRLAEEANQAKSNFLATMSHEIRTPLYGIIGTLELLENT---ALSPKQ 510

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +++ +S +S +L++L+ DILD++ ++A  + + + +  L DL+    Q       +  
Sbjct: 511 KHFIDRMSTTSQLLMHLIGDILDISKIEANQIHIQHISFDLLDLIQHTVQLYQGLAQQKK 570

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVK 724
           + +  I D  + +  + D  RL QIF  +LSNA+ F+  G  V ++     N + I  V 
Sbjct: 571 LLLFAIIDPNIYAVRIGDAARLQQIFGNLLSNAIKFTHNG-KVTVELRNGTNNNIILFVN 629

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  I ++  + +F  F      +    G GLGL I    + L GG +S++S+    ++
Sbjct: 630 DTGVGISQEQQEKLFEPFYQAHSGQHTYGGTGLGLFICAELVKLMGGEISVTSNLTVGSS 689

Query: 784 INCRIPSK 791
               +P +
Sbjct: 690 FQITLPLE 697


>gi|320101775|ref|YP_004177366.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749057|gb|ADV60817.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1093

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 110/513 (21%), Positives = 204/513 (39%), Gaps = 76/513 (14%)

Query: 333 RSFVELWEIDLA---FLATNPSNDELLEFLRSANKLPEQLNWKTWKENI--------FSV 381
           R+ +  W+ D A   F+ ++ +   LL +     +LP+  N  TW+E I         + 
Sbjct: 169 RAGLNYWDFDFATNRFIFSS-TYKSLLGY--ENRELPDNAN--TWRERIHPNDRDLALNA 223

Query: 382 YKSSETHKDT----------------WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
            +++   +D                 W L +G  L       PR     +  +LT Q   
Sbjct: 224 LEAAREGRDPILCFSHRLKTKDGGYRWVLAHGVVLRDEA-GVPR-HITGLILDLTSQRHN 281

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFG-PDGR---IKLSNPAFRSLWKTEENRLSPGTHIR 481
           + +      +    +DH ++ VA+     GR   I  +NP F          +   ++  
Sbjct: 282 QVELR----LMHAVVDHAADAVAITSSAHGRHRAIVYANPTFMDWLG-----MDASSYFE 332

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEY--SIIPLPNAQT 538
            +      ++   D     A+  T     R   + TL +    S LE    +  +P  + 
Sbjct: 333 LLGREIEEFFCLEDQPSSDASSATISISGRNLARETLLKRRDGSTLEVDLQVFTIPGERE 392

Query: 539 -----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    +++   R E  L E      +A+E K  F+  +S+E+R+PL +++G T L
Sbjct: 393 ADLRLVWVARDISVRKRFEAQLVEAKRIADQANEAKTRFLAGMSHEIRTPLNSVLGMTRL 452

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +    L ++Q      I +S   LL LVN +LDL+ +++G M+L ++++    ++  
Sbjct: 453 LMDT---PLTAEQRDLAAAIQSSGESLLELVNGVLDLSKIESGRMELEHASMSPRGVVES 509

Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
           V   IA       + +   +++        D  +L Q+   + SNA+ F++ GS  I   
Sbjct: 510 VLDMIAATAERKGLEVAARVAEDVPERVRGDAAKLRQVLVNLASNAVKFTASGSVTIDVI 569

Query: 710 ------LKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
                 L+  RD+          F+V++ G  I  D    +F+ +        R   G G
Sbjct: 570 TLGQCPLRPGRDSVSDRPGLILSFTVRDTGVGIAPDKVSRLFDAYRQADASITRLYGGTG 629

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  + L GG + + S     +     I
Sbjct: 630 LGLAISKKLVELMGGEIEVESEPGRGSIFRFTI 662



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 75/232 (32%), Gaps = 22/232 (9%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIV- 280
           +        +++ I  + +       +           F   + T + G     ++ +V 
Sbjct: 199 RELPDNANTWRERIHPNDRDLALNALEAAREGRDPILCFSHRLKTKDGGYRWVLAHGVVL 258

Query: 281 --RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRS 334
                      G+ +D++ +     +L   + ++ +   A+AI      ++R + + N +
Sbjct: 259 RDEAGVPRHITGLILDLTSQRHNQVELRLMHAVVDHAADAVAITSSAHGRHRAIVYANPT 318

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
           F++   +D +      S  ELL          E            S+   +   +     
Sbjct: 319 FMDWLGMDAS------SYFELLGREIEEFFCLEDQPSSDASSATISISGRNLARETLLKR 372

Query: 395 PNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            +G TL V +               +W+  +++V+   E +     ++  + 
Sbjct: 373 RDGSTLEVDLQVFTIPGEREADLRLVWVARDISVRKRFEAQLVEAKRIADQA 424


>gi|118579770|ref|YP_901020.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502480|gb|ABK98962.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 944

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 102/507 (20%), Positives = 193/507 (38%), Gaps = 55/507 (10%)

Query: 324 QNRYLQFHNRSF-VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV- 381
           +   L    ++F +  WE +         +D +L FL           +++W+ ++    
Sbjct: 84  KELRLDLVRKTFQIGFWEYEPGG-DGEHGDDAMLRFL-GKQADESASLYESWRASVLPED 141

Query: 382 -------------YKSSETHKDTWHLPNGQTLHVIVTSNPRGG-------TIWMFENLTV 421
                         K+       +   +GQ   +      R          I + +++T 
Sbjct: 142 LVEVEGGLRAALNEKTPFDTTYRFRRDDGQLRVIRAHGRLRKREEGRPPCLIGVSKDITE 201

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            V  E       +      + +   V  +  +     +N  ++  +      +  G HIR
Sbjct: 202 LVQSEHAMRDNERFLKILANVIPGMVGYWTYEQYCAFANDEYQLWFGRSPEEML-GMHIR 260

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +  T           D+   I  + +   +  Q  L           I  +P+ +    
Sbjct: 261 ELLGT-------ELYQDIEPFIHGALEGVPQHFQHALTRSDGQHCHTMIHYIPDMEGEQV 313

Query: 542 FVNV----------TDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                             R E    AL ++ E    A+  K+ F+ ++S+E+R+P+  ++
Sbjct: 314 RGFYELVSDITELKQTQFRLEELNTALQQRTEEAEAANAAKSRFLANMSHEIRTPMNAVL 373

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL+ ++   L+ +Q  Y+E +  +S  LL ++NDILD + ++A  M+L        
Sbjct: 374 GLLHLLQRTE---LSPRQHDYIEKVQMASRSLLGILNDILDFSKIEADKMELETVPFFPQ 430

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +LLN +   ++  +    + +    D  L  + + D  RL Q+   +  NA+ F+ +G  
Sbjct: 431 ELLNNLAVFLSPSLQNKKVELLFDVDADLPPTLLGDALRLQQVLLNLTGNAVKFTEQGRI 490

Query: 708 V----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
           V    ++    D     FSVK+ G  IP D  +SVF  FV       RR  G GLGL+I 
Sbjct: 491 VVTIQVVSLTPDQARVRFSVKDTGIGIPADKLESVFTGFVQAESSTTRRFGGSGLGLTIS 550

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              + L GG + + S+    +T +  I
Sbjct: 551 RRLVRLMGGELEVESTLGKGSTFHFTI 577


>gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 561

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 104/534 (19%), Positives = 196/534 (36%), Gaps = 58/534 (10%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS-ANKLP 366
              +L  +T  +   +   +L+  N    EL          +    EL + L + A    
Sbjct: 32  LLRLLDAVTDPLLFTNAEGHLRIANARARELLVAGEGASEGHRRAVELNQHLFTTALASA 91

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
                 T +    S+    +     + L        +  +    G + +  N+T      
Sbjct: 92  ATGGASTVRRRELSLVDPLQGTDLLFEL----VTTPMREAQGVVGVVSVLRNVTDLGRAT 147

Query: 427 TK----YNTLVKVQGET----------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
                 Y  L   + E           +D ++  + +  P G + L N     L+     
Sbjct: 148 QALGESYRRLRASEQEARSERLRLDLILDSVANPIILTDPSGSMVLMNDPAERLFSAPA- 206

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-----------ELL 521
               G   R    T   +++      L       +  E   ++ T            ++L
Sbjct: 207 --GSGEASRRRVRTNDAHFSSFLSHLLSQGSARRWRGELHLMEPTTGTPLPMEAVASKVL 264

Query: 522 SDSVLEYSIIPLPNAQTM--------------------LTFVNVTDSVRAERALTEKNEA 561
           +D     SI+ L + +T                            +       L  +   
Sbjct: 265 TDQGETTSIVTLLHDRTETREKARLLEQLKTASSELEAKVHTATAELAEQNEKLRRQALQ 324

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L +A   K+ F+ ++S+E R+PL  I+G+T++L     G +   Q + ++ I ++   LL
Sbjct: 325 LEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQKRNLQRIDSNGRHLL 384

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++N+ILD+  ++AG M LN S   L +LL EV   +   +    + +      +L    
Sbjct: 385 QVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKLVVDAALPPRLPEVH 444

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVF 739
           +DRQ++ QI   +LSNA+ F+ +GS + + A         + SVK+ G  I ++  + +F
Sbjct: 445 SDRQKVKQIVLNLLSNALKFTHEGS-IQVNAEYQPSLSLVLISVKDTGIGIAQEHQEKIF 503

Query: 740 NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             F            G GLGLSI      + GG +++ S+    +T    +P +
Sbjct: 504 EDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTFTLHLPRR 557



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 59/195 (30%), Gaps = 27/195 (13%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT---ETEGIV 232
           +E   +        + + + + L D++   +   +  G +  AN   ++     E     
Sbjct: 14  TEEPSSPGSPATPPDQLILLR-LLDAVTDPLLFTNAEGHLRIANARARELLVAGEGASEG 72

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--------- 283
            ++A+  ++ LF   +       ++  +    ++     G +  +++V            
Sbjct: 73  HRRAVELNQHLFTTALASAATGGASTVRRRELSLVDPLQGTDLLFELVTTPMREAQGVVG 132

Query: 284 --------NSFGEAGIAIDVS------KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
                      G A  A+  S       E     +      IL ++   I + D +  + 
Sbjct: 133 VVSVLRNVTDLGRATQALGESYRRLRASEQEARSERLRLDLILDSVANPIILTDPSGSMV 192

Query: 330 FHNRSFVELWEIDLA 344
             N     L+     
Sbjct: 193 LMNDPAERLFSAPAG 207


>gi|254475084|ref|ZP_05088470.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214029327|gb|EEB70162.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 843

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 94/393 (23%), Positives = 163/393 (41%), Gaps = 29/393 (7%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-------- 470
           +      E    TL +     ++    G+     D  + + +   R+L+           
Sbjct: 297 IRTLKRRERDLETLSRRLEMAVETSKIGIWEIHEDDDMAIWDLRMRTLYDDPTGSGDVPL 356

Query: 471 --ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                         +     +  +   G  +   +    D  RK+++       D     
Sbjct: 357 STWRSFILPADRDAVIEGFQKSLHNGTGHSVDFTVQLP-DGTRKNIRAMGRAYRDERGRN 415

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELR 581
            +I +    T    ++  D  RA   LT++N  L        KAD+ K+ F+ ++S+E+R
Sbjct: 416 CMIGVEWDVTRDVELSN-DLKRANLTLTKRNTELTQAKLAAEKADQAKSEFLANMSHEIR 474

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+G  D+L  +    L+++Q Q V+ +  SS+ LL ++NDILDL+ ++AG M+++
Sbjct: 475 TPMNGIVGMADILANT---DLSAEQQQCVDTVRESSSALLKIINDILDLSRLEAGKMEIS 531

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMD 700
                L   ++ V  ++  +M E  +         L      D  RL QI   +L NA+ 
Sbjct: 532 PIDFDLRKCVDGVVDTLRPRMVEKGLTFTQTYTADLPELAHGDNGRLRQILLNLLGNAVK 591

Query: 701 FSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           F+ +GS V L  +RD  D     F VK+ G  I ED  + +F RF        R   G G
Sbjct: 592 FTKEGS-VGLHVSRDKSDPYRMCFEVKDTGIGISEDQAEHIFERFSQADAATTRHFGGTG 650

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I        GG ++++S      T    I
Sbjct: 651 LGLTISNILAERMGGQITLASEPGKGATFRLEI 683


>gi|257059363|ref|YP_003137251.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589529|gb|ACV00416.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 925

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 18/259 (6%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              + +   +   K + +++ ++ KN F+  + +E+R+PL  + G T LL  +    LN 
Sbjct: 238 HFHTFKELESQIAKQKTIKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDT---PLNP 294

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q ++V  I +S   LL ++N+ILD + ++A  ++L      L   + EV +    +  +
Sbjct: 295 QQEEFVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQ 354

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------- 714
             + +  + +     + V D  RL QI S +L NA+ F+ KG  V+  +A+         
Sbjct: 355 KQLELAYLIEPNTPSAIVGDSTRLRQILSNLLGNAVKFTEKGEVVVYVSAQPLPNSDRTD 414

Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               N +  F+VK+ G  I    C  +F  F        R   G GLGL I +    L G
Sbjct: 415 KTLANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMG 474

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S++   +T    I
Sbjct: 475 GKMWVHSTEGKGSTFYFTI 493


>gi|160937915|ref|ZP_02085273.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439141|gb|EDP16895.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
          Length = 960

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 108/536 (20%), Positives = 216/536 (40%), Gaps = 57/536 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +E     Q     ++ +++   I  F   +   +   NR   EL+           S +E
Sbjct: 159 REQKYIQQARFLSQLYNSVPCGIIQFERGEGHRIVNVNRMGWELYGYS--------SEEE 210

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHV------IVTS 406
               +++  ++    + +  +  I  +  + +T     H    +G+ + +      IV +
Sbjct: 211 YRREVKNPFQMVLDEDKEWIEGIIGGLALNGDTASYIRHTFSRDGKQIWISVIMGRIVNA 270

Query: 407 NPRGGTIWMFENLTV--QVDLETKYNTLVKVQGETIDHLSEGVA-----VFGPDGRIKLS 459
           + +     +F ++T   Q++LE +   L++ +      L   +      +   +    + 
Sbjct: 271 DGQEVIQAVFTDVTDIKQLELEQERQQLIENR-----SLRAAICTAYPLIMSLNLTKDIY 325

Query: 460 N-----PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----- 509
           N            +           I ++  +    +  +   +   A   + +      
Sbjct: 326 NCFIEDQDACLSGRCGSYTEMIKGDIPDVYPSYREDFETAFARENVLARFAAGERDIYME 385

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-----LTEKNEALR 563
            ++  + G    LS  ++ Y   P  +    +  V V DS RAE+A     L +   + +
Sbjct: 386 FQKMGMDGKYHWLSVQII-YVENPFNDDVLAIELVKVLDSQRAEQARQEQLLRDALASAK 444

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A++ K+ F+  +S+++R+P+  I+G +  +   KL    S Q  + +   ASS  LL+L
Sbjct: 445 AANQAKSDFLSRMSHDIRTPMNAIVGMS-TIGQLKLDDRRSVQDCFCKID-ASSRYLLSL 502

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVA 682
           +NDILD++ ++ G M+L +      +L++EV Q I  +  E  I  +   S+     ++ 
Sbjct: 503 INDILDMSKIETGKMELAHEYFDFTELMDEVNQIIYPQAEERQIEYVIYHSEPLEQFYIG 562

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKS 737
           D  RL QI   +LSNA+ F+  G  + ++              F VK+ G  +  +    
Sbjct: 563 DPLRLKQILMNLLSNALKFTRAGGRIQIQIEEQKRTNGFSYLRFQVKDTGIGMSREFRSR 622

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F   A    R   G GLGLSIV + + L GG + + S  E  +     +P K
Sbjct: 623 LFMPFEQEAPETARNNIGSGLGLSIVYNLVQLMGGSIEVESEKEKGSVFTVTLPFK 678


>gi|77919621|ref|YP_357436.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77545704|gb|ABA89266.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 613

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 124/632 (19%), Positives = 223/632 (35%), Gaps = 68/632 (10%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L  KK       F  +   L+         G + W++  ++    T   +          
Sbjct: 24  LTLKKYQALAEAFGGVVYELNHP------GGRLDWSDQCWRMFGITREEMGSDIQSWLVH 77

Query: 243 LFKEE---IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR--------VLNSFGEAGI 291
           +  E+     K M  +    +        ++H +     +            +     G 
Sbjct: 78  IHPEDRTHAFKEMHRTLRSGQPTQLE-YRVQHRDGHYVWVQDYSYVCCRGANDVCHIVGY 136

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
             ++S      + L      + +   AIA  D    L + NRSFV +  ID    A    
Sbjct: 137 LQNISDTKKHLNDLDLARRAIDSSINAIAFTDLEGCLSYVNRSFVRMMGIDKPETAIGRQ 196

Query: 352 NDELLEFLRSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN--- 407
              L +  + A   L     +  W   + ++             P+G   +  V+++   
Sbjct: 197 VGTLWKNPKKARVVLRNLQKFGEWSGEVAAL------------RPDGLLAYFEVSAHVVE 244

Query: 408 PRGGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPA 462
             GG     +  F ++T Q   E +     +         S+ + +F     RI   N A
Sbjct: 245 DSGGHPHCYMASFVDVTEQKKAEQEVQESEEKYRLLFSSCSDAIVIFDAGSLRIVDVNGA 304

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--- 519
              L+                       +   D  DL      S    ++ + GTL    
Sbjct: 305 ALDLYGYT-----------------RDEFLALDVLDLSEEPEQSRLRMQQIISGTLRHFP 347

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           L+S    + + + +     +          +            ++ +E+K+  +  VS+E
Sbjct: 348 LVSHRRKDGTRVDVE----VSVGSFSWQKRQVFAGFFRDVSERQRIEELKDDMLSSVSHE 403

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PLT I+GFTD L  S       +Q  Y+  I   S  L  LV + L+L  + AG   
Sbjct: 404 MRTPLTAIMGFTDYLLKS--NDRPERQKDYLSIIQQQSERLKELVENHLNLQRLRAGHGV 461

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
                + +  LL+ V    ++    + IRI+      L     D  +L +    +LSNA+
Sbjct: 462 GAIHPVEVLPLLHGVSNMFSSARGRDRIRIQC--PEDLPPVRGDENQLYRALYNLLSNAI 519

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGL 758
            +SS+   ++L A R +   +  VK+ G  IP +   ++F+RF    A     RG GLGL
Sbjct: 520 KYSSEDQEILLGARRADDAAVLFVKDQGVGIPNEHQATIFDRFFRVPAGDHGMRGSGLGL 579

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           S+V+  I  H G + + S     +    ++P 
Sbjct: 580 SLVQEIIKAHNGRIWLDSVPGQGSCFYLKLPL 611


>gi|255009663|ref|ZP_05281789.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 3_1_12]
 gi|313147448|ref|ZP_07809641.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136215|gb|EFR53575.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1014

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 135/244 (55%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E  LT   +   +++ +K++F+ ++S+E+R+PL  I+GF+ +L ++       ++ 
Sbjct: 633 RKKMEMELTTAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILAST---DEEEEKR 689

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV  I  ++T+LL L++DILDL+ ++AG ++  YS + LN ++ E++ ++  K+    +
Sbjct: 690 EYVNIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNVELNAVMKELESTLQLKIKSEAV 749

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +          ++ R+ Q+   +++NA+ F+ KGS +         +  F V + G
Sbjct: 750 KLEFVPPADRCLVHLEKNRVSQLIINLVTNAIKFTEKGS-IRFGYELRGKELYFYVADTG 808

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             I +D  +S+F RFV      Q  G GLGLSI ++ +N  GGH+ + S     +T    
Sbjct: 809 CGIAKDEQESIFGRFVKLNSFAQ--GTGLGLSICQTLVNHMGGHIGVESEKGKGSTFWFT 866

Query: 788 IPSK 791
           +P +
Sbjct: 867 LPYE 870


>gi|119776242|ref|YP_928982.1| putative integral membrane sensor protein [Shewanella amazonensis
           SB2B]
 gi|119768742|gb|ABM01313.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1141

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 86/505 (17%), Positives = 195/505 (38%), Gaps = 16/505 (3%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+S  +  ++       I+      I   D +  +   N++  +L       L       
Sbjct: 261 DIS--LRASESKRRVQAIMETAIDGIVTIDSHGIITDVNQATEKLLGWRADELIGQNVKI 318

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
            + +   S +         T +  I    +  E      H    +     V        +
Sbjct: 319 LMPDPFHSEHDGYLARYLATGEARIIGKGREVEAIHKNGHKIAIRLGIGHVKMAEDDFFV 378

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF---GPDGRIKLSNPAFRSLWKTE 470
               ++  ++ +E       +     I ++  G+A          +   + A   +    
Sbjct: 379 AFISDIRQRLSMEMALRENEQKFRSLIGNIP-GIAYRCKNDEQWSMIFISNAVEKITGYP 437

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEY 528
            +     +  R+ +     + ++ +  +     + +F+ E + L   G +  + +     
Sbjct: 438 ASDFMLPSPKRSFSDLF--HPDDLEHINNAVPPVGAFNLEYRILHRNGDIRWMMEYGNHV 495

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                         +++T+  + E+ L E  +    A   + +F+ ++S+E+R+P+  II
Sbjct: 496 RDQQSGEMYLDGFIMDITERRQMEQELLEAKDIAEAAATARAAFLANMSHEIRTPMNAII 555

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+D+L  S+      ++ ++++ I+ ++  LL+L+ND+LD A +D G ++L      L 
Sbjct: 556 GFSDILLESQF---EPEKHRHLKTINHAAKSLLHLLNDVLDSAKLDKGKLELEVRDFSLV 612

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             L+EV  ++  +     +++ +    KL   +    +R+ Q+ + ++SNA+ F+ KG  
Sbjct: 613 QELDEVISTLWLQARRKGLQLTMEVSPKLLPCYAGSPERIRQVLTNLVSNAVKFTEKGQV 672

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +           F V++ G  +  +    +F+ F        RR  G GLG +I +  +
Sbjct: 673 RLTVNPGQGNHVDFVVEDTGIGMSPEQLDKIFDPFTQADASMSRRFGGTGLGTTISKQLV 732

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L GGH+S  S     +     +P 
Sbjct: 733 ELMGGHISAGSELGKGSRFCFSLPL 757



 Score = 41.1 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 64/188 (34%), Gaps = 14/188 (7%)

Query: 384 SSETHKDTWHLPNG-QTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           S +  + +++L  G  T  +++TS   G   I+ +++++++           +     ++
Sbjct: 225 SPQPPEMSFYLALGVTTATLVMTSLVLGLSLIYKYKDISLRAS------ESKRRVQAIME 278

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
              +G+      G I   N A   L     + L  G +++ +        ++       A
Sbjct: 279 TAIDGIVTIDSHGIITDVNQATEKLLGWRADEL-IGQNVKILMPDPFHSEHDGYLARYLA 337

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
                   + + ++   +      +   I  +  A+       ++D  +         E 
Sbjct: 338 TGEARIIGKGREVEAIHKNGHKIAIRLGIGHVKMAEDDFFVAFISDIRQ-----RLSMEM 392

Query: 562 LRKADEIK 569
             + +E K
Sbjct: 393 ALRENEQK 400


>gi|313902163|ref|ZP_07835572.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467563|gb|EFR63068.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 522

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 89/393 (22%), Positives = 155/393 (39%), Gaps = 18/393 (4%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +  ++ +   +  T        +  ++ GV     DGR++L+NPA R L    E  L
Sbjct: 107 FNEMAARLQVTLRELRTEQARLATVVGAMTSGVLFIDGDGRLRLANPAARRLLDIPEQAL 166

Query: 475 SPGTHIRNIAATCSRYYNESD-GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                        +R   E   G  +    +T   D   + +     +     +     +
Sbjct: 167 GRDYISVTRNYGLARVIEEGLVGGQVVEHDVTIPPDPGAAPRHVRVTVVPLGTDAGGATV 226

Query: 534 PNAQTMLTFVNVTDSVRAERALT----------EKNEALRKADEIKNSFVQHVSYELRSP 583
           P+   +        + R   A                 +R+ ++I+  FV +VS+ELR+P
Sbjct: 227 PDGVDVPCEAGSNSAGRGVTAAEGKRGGVVVVLHDITEIRRLEQIRRDFVANVSHELRTP 286

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  + GF + L    +    +    + + I   +  +  LV D+LDLA +++    L   
Sbjct: 287 VAAVQGFAETLLEGVIREDPATAEHFAQVIHREAERMARLVQDLLDLARLESPEPGLQRE 346

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              L D   +  +    ++    +R++V S  +     ADR RL Q+++ +L NA  ++ 
Sbjct: 347 RFDLRDSAVQAAERFRPRLEAAGLRLEVQSPPEPVPVWADRHRLDQVWTNLLENARQYTP 406

Query: 704 KGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            G TV +   R+        +  V++ G  IP D+   +F RF            G GLG
Sbjct: 407 VGGTVTVAVGREGQGHQAMAVGEVRDTGRGIPPDVLPRIFERFYRVDPGRSRAAGGTGLG 466

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+IV+  I  HGG V   S     T I  RIP 
Sbjct: 467 LAIVKHIIEAHGGVVGAESQLGAGTVIRFRIPL 499



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 107/362 (29%), Gaps = 60/362 (16%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            +     +++ +  +  L     E    ++  +    ++V +  +F E    + V+    
Sbjct: 66  AERVTRPVRELVAGARQLAAGEFERRVHVDGPD----ELVTLARAFNEMAARLQVT-LRE 120

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +  +      ++  +T  +   D +  L+  N +   L +I    L        +     
Sbjct: 121 LRTEQARLATVVGAMTSGVLFIDGDGRLRLANPAARRLLDIPEQALGR--DYISVTRNYG 178

Query: 361 SANKLPE--------------QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
            A  + E                +      ++        T      +P+G  +     S
Sbjct: 179 LARVIEEGLVGGQVVEHDVTIPPDPGAAPRHVRVTVVPLGTDAGGATVPDGVDVPCEAGS 238

Query: 407 NP-----------RGGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLS 444
           N            RGG + +  ++T    LE            +  T V       + L 
Sbjct: 239 NSAGRGVTAAEGKRGGVVVVLHDITEIRRLEQIRRDFVANVSHELRTPVAAVQGFAETLL 298

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAI 503
           EGV    P      +    + + +  E        + ++A   S     + + +DL  + 
Sbjct: 299 EGVIREDP----ATAEHFAQVIHREAERMARLVQDLLDLARLESPEPGLQRERFDLRDSA 354

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           + + +  R  L+      +   LE    P P            D  R ++  T   E  R
Sbjct: 355 VQAAERFRPRLEA-----AGLRLEVQSPPEP-------VPVWADRHRLDQVWTNLLENAR 402

Query: 564 KA 565
           + 
Sbjct: 403 QY 404


>gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1932

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 92/406 (22%), Positives = 172/406 (42%), Gaps = 31/406 (7%)

Query: 403  IVTSNPRGGTIW--MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +  +NP    +   +FE  +T  ++L   +    ++     D L+E +A+      I  S
Sbjct: 1096 LGEANPLNAVVLPVLFEGQVTAVIEL-ASFRRFSEIHLTFFDQLTESIAIVL--NTIAAS 1152

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                  L +++       T    +  T  R   ++        ++    +E +     LE
Sbjct: 1153 MRTEELLKQSQSLAEELQTQQSELRETNQRLEQQAQSLKASEDLLRGQQEELQQTNAELE 1212

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              ++         L   Q         +  +A R+L EK E L  +   K+ F+ ++S+E
Sbjct: 1213 EKAE---------LLALQKKEVERKNREIEQARRSLEEKAEQLALSSRYKSEFLANMSHE 1263

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            LR+PL +++    LL  +   +L +KQ +Y + I ++   LL L+NDILDLA +++G M 
Sbjct: 1264 LRTPLNSLLILAKLLTDNVDSNLTAKQVEYSQTIYSAGNELLALINDILDLAKIESGTMS 1323

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
            ++ + I L++L  ++++          +   V    +L  +   D +RL Q+   +LSNA
Sbjct: 1324 IHATPIPLSELAEQIERGFGQIAQNKGLTFAVELAPELPTTVNTDIKRLQQVLKNLLSNA 1383

Query: 699  MDFSSKGST-VILKAARDN------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
              F+ +G   + ++ A+                  F+V + G  I  D  K +F  F   
Sbjct: 1384 FKFTERGEVRLRIEVAKPGWNPNQQPLNPAQNVIAFAVSDTGIGIAADKQKIIFEAFQQA 1443

Query: 746  A--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +  G GLGLSI     +L GG + ++S     +T    +P
Sbjct: 1444 DGTTSRKYGGTGLGLSISREIAHLLGGEIKLTSHPGQGSTFTFYLP 1489


>gi|319936949|ref|ZP_08011359.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319807885|gb|EFW04464.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 908

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 159/386 (41%), Gaps = 23/386 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSLWKTEENRL-----SP 476
             E K +   + +   +  +  G+A         I   N  F  L      +      S 
Sbjct: 244 SAEYKLSKKDQEREAILKSIPGGLARLDTRDFSTILWYNEKFLELIGYTAEQFENELQSQ 303

Query: 477 GTHIRN----IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
             +I+      A   ++   ++    +F   +   D E + L  TL  LS     +  IP
Sbjct: 304 CRYIQEDDLKRALVIAQTLTKTGDNAVFEVKMNRRDGEERILTVTLCYLSAED-SWDGIP 362

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              +  +       +  R  +AL +  +  + A+  K  F+  +S+++R+P+  I+G   
Sbjct: 363 SYYSVGLDVTEARREEERQRQALEDAYQIAKIANSAKTDFLSSMSHDIRTPMNAIVGMAS 422

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           + +     +   K S  +  I  SS  LL+L+N++LD++ +++G + L    + L +L++
Sbjct: 423 IAQAHI--NFPEKVSDCLHKIKISSRHLLSLINEVLDMSKIESGKIDLMLEDVNLPELID 480

Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +V       + E      ++    K    VAD  RL QIF  ++SNA+ ++ +G  + L 
Sbjct: 481 DVSDMCRALIDEKQQDFSIVIGRIKHEKVVADGDRLKQIFMNLISNAVKYTPRGGQISLV 540

Query: 712 AAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVES 763
                    D G F F   +NG  + ED    +F  F         + +G GLG++I E+
Sbjct: 541 INELDSLILDKGRFEFKFYDNGIGMSEDFLPHIFEPFSRAEDTRINKIQGTGLGMAITEN 600

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +N+  G + + S     T     IP
Sbjct: 601 IVNMMNGTIEVESQLGKGTIFTVSIP 626


>gi|298385109|ref|ZP_06994668.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262253|gb|EFI05118.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 720

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 109/517 (21%), Positives = 215/517 (41%), Gaps = 39/517 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            +     + +     ++ N+ V  A    IFD    +            ID  +   NP+
Sbjct: 212 HERSRRLEIMRSYSSLVENMPVLYARVELIFDPGARI------------IDYVYREVNPT 259

Query: 352 NDELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSN 407
            ++ +   E +          ++     + +S    +      ++L   +T L VI   +
Sbjct: 260 FEKYILPKEKILGKKYSELNPDYSPELPDRYSELNDNRQITFQYYLEKTKTHLTVISIHS 319

Query: 408 PRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
              G + +F  + T  V  +    +        +D        +     +   N +   L
Sbjct: 320 KTKGCVDVFGVDNTELVLTQQMLKSTNHKLSAALDAADMTPWKWDLRTGLLSCNVS-HDL 378

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS---- 522
           + TEE     G  I    + C     + D   +  A     + E + ++    +      
Sbjct: 379 YVTEEEVTHDGNLIIVPTSACFAKICDEDRERVRDAFERLANGETQKMREEYRVGRQWLP 438

Query: 523 ----DSVLEYSI-IPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
               +  +E    +   +A       + T + VT     E AL +      +A+ +K+SF
Sbjct: 439 SPQQNEWVEVRAAVDERDANGKPLSLIGTSMTVTQRKEMEEALVQAKVKAEEANTLKSSF 498

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+GF+ LL +++ G    KQ +Y+  I  ++T+LL L++D+LDL+ 
Sbjct: 499 LANISHEIRTPLNAIVGFSSLLVSAERGISEEKQ-EYINIIENNNTLLLQLISDVLDLSK 557

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++AG M+ +Y+ + ++ L  E++ +   +  ++ I I            ADR RL+Q+  
Sbjct: 558 IEAGTMEFDYAPVDVHGLFIELEDTFRLRNKKSGICICYHRRTTECVVKADRNRLVQVMM 617

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +++NA+ F+ +GS       R++G   F V + G  IPE+  + +F  FV        +
Sbjct: 618 NLMNNAVKFTGEGSIEFGFDVREDGFLHFYVTDTGCGIPEERLEEIFGNFVKLNSF--VQ 675

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+I  + +   GG +   S     +T    +P
Sbjct: 676 GTGLGLTICRAIVERMGGKIGAVSRLGQGSTFWFTLP 712



 Score = 38.0 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 105/335 (31%), Gaps = 43/335 (12%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIR---QRNSLAKKVNE 57
           ++ G+       G++  T F            ++   +I +I L R   +R+    ++  
Sbjct: 164 LLLGLCPDDTVFGMKPPTFFERNKYYLALFFSLMALAVIYVIWLRRALHERSR-RLEIMR 222

Query: 58  TYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFEN 117
           +YS L E    L     L+ +     I +  ++  P     +  +  I           +
Sbjct: 223 SYSSLVENMPVLYARVELIFDPGARIIDYVYREVNPTFEKYILPKEKILGKK------YS 276

Query: 118 WLKFHHYIKLSKATEKLRKEGQ-SFD--LVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
            L   +  +L     +L    Q +F   L     +   I I  +  G       + + G+
Sbjct: 277 ELNPDYSPELPDRYSELNDNRQITFQYYLEKTKTHLTVISIHSKTKG------CVDVFGV 330

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV-- 232
             +  E  L  + L +         D+ D   W  D    +L  N+S+      E +   
Sbjct: 331 --DNTELVLTQQMLKSTNHKLSAALDAADMTPWKWDLRTGLLSCNVSHDLYVTEEEVTHD 388

Query: 233 -----------FQKAIGESRKLFKEEI-KKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
                      F K   E R+  ++   +     +  + + +      L       +  V
Sbjct: 389 GNLIIVPTSACFAKICDEDRERVRDAFERLANGETQKMREEYRVGRQWLPSPQQNEWVEV 448

Query: 281 RVLNSFGEA--------GIAIDVSKEITVNDQLTH 307
           R      +A        G ++ V++   + + L  
Sbjct: 449 RAAVDERDANGKPLSLIGTSMTVTQRKEMEEALVQ 483


>gi|15894190|ref|NP_347539.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023801|gb|AAK78879.1|AE007605_12 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325508318|gb|ADZ19954.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 683

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 159/361 (44%), Gaps = 7/361 (1%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN-IAATCSRYYN 492
           +   + +  + E + +   +G+    N     L + ++ +   G +I + I         
Sbjct: 299 QRYMQILQIMPEAIFIHD-NGKCNFINDKAIKLLEVKDVKDIIGKNIVDFIHEDYKELAQ 357

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                 +   +   F +ER       +++ ++    +     N  T +T +      +  
Sbjct: 358 ARIDKTMKTGMPCDFIEERLVTAMGKKIIIEAA---TTTFSHNNGTFITIIRDMTEKKKN 414

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            A  +K E     D+++  F  ++S+ELR+PL  +     L++ +          +Y++ 
Sbjct: 415 EANRKKLEQTLYYDKVRKEFFSNLSHELRTPLNILASAMQLVRLNMDNDNKDGFEKYLKI 474

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++ +   L  ++++++D+  +DAG + ++  T+ +  ++ ++  S+   +    I I   
Sbjct: 475 MNQNIYRLTKIIDNLIDITKIDAGYLSVDLHTVEIVSVIEDITMSVIEFVKSKGIDIVFD 534

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D +      D  ++ ++   +LSNA+ F+ KG  + +     N      VK+ G  IP+
Sbjct: 535 TDVEEKFMPVDSDKIERVMLNLLSNAVKFTPKGGKITVNVYDKNDSIQIRVKDTGIGIPK 594

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           DM +++F RF+        ++ G G+GLSIV+S I +HGG + + S     +     +P 
Sbjct: 595 DMKETIFQRFIQVNKTLIREKEGSGIGLSIVKSLIEMHGGQIRVESELNVGSEFIIDLPV 654

Query: 791 K 791
           +
Sbjct: 655 R 655


>gi|222474959|ref|YP_002563374.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Florida]
 gi|222419095|gb|ACM49118.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Florida]
          Length = 474

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 143/313 (45%), Gaps = 21/313 (6%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           + DG  +F  +I ++    ++L+G   +L        +IP+  A      + V    R+ 
Sbjct: 161 QDDGPKVFLQVIKNYGKLSQALRGVHGML--------VIPVGVAILSCVCLVVLFYRRSA 212

Query: 553 R----------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           R           L E+ E   +    K+ F+ +VS+ELR+PL +IIGF++++++  LG +
Sbjct: 213 RLLSSQYDANLELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPI 272

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + +  +Y+  I  S   LL+L+NDILD +  +A  + + +    L  +++     +  +
Sbjct: 273 GSEEYKEYINDIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPR 332

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  + +K     +    +AD +R+ Q+   +LSN++ F+ +G  V L A       I 
Sbjct: 333 AKDAKVELKKEMPEEPIVMLADPKRMKQVIINVLSNSVKFTPEGGLVKLCAEIRGEQLIV 392

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + + G  I +     V + F      H  +  G GLGL + +  + L  G  SI S   
Sbjct: 393 EISDTGIGIAQQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPN 452

Query: 780 GVTTINCRIPSKE 792
             T +    P K+
Sbjct: 453 LGTIVTLTFPHKQ 465


>gi|312143399|ref|YP_003994845.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904050|gb|ADQ14491.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 613

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 80/357 (22%), Positives = 159/357 (44%), Gaps = 24/357 (6%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +     +++LS  + V   + +I L N   R L+  + + +  GTH   +          
Sbjct: 270 EKSEAVVNNLSSPLIVTDIEHKIVLINETARELFSLKNDVV--GTHFLKVIKA------- 320

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
               ++F  I      E K+    +   +D    Y I       +    ++  +  +   
Sbjct: 321 ---EEIFEHIKNPEAKEEKTF---ILKKNDKKRHYRI-------STKQVIDEDEEYQFTV 367

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E    L++ D +K+ FV  VS+E R+PLT++     ++     G LN +Q + +E  
Sbjct: 368 TLLEDITRLKEIDNMKSEFVSTVSHEFRTPLTSMNMGLSMVINEDTGELNEEQHELLEAA 427

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 L  LVND+LDL+ +++G +++ +  + +ND++ +       +  E +I +K   
Sbjct: 428 YEDVERLTELVNDLLDLSKIESGKIEMEFDKVDVNDIIEKTLNPFFKQAEEKDIELKFKQ 487

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +     AD  ++  + S ++ NA+ ++ +G  + + A       + SV +NG  IP++
Sbjct: 488 SEENVFAYADPSKISWVISNLIGNALRYAEQG-KIEVDAEIKGRRVLVSVADNGPGIPKE 546

Query: 734 MCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F +FV     + ++ G GLGL+I +  I  H G +   S +   +T +  IP
Sbjct: 547 YQAKIFEKFVRTGNDQDEKSGTGLGLAIAKEIITAHNGRIWFDSEEGEGSTFSFYIP 603


>gi|312885917|ref|ZP_07745549.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311301724|gb|EFQ78761.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1437

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 11/262 (4%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            N+Q+    +   +  + +           KA++ K+ F+  +S+E+R+P+  +IG   LL
Sbjct: 890  NSQSENLHLLNEELNKQKIQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVIGMASLL 949

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +    LN++Q +Y E I      L+N++NDILD + +++G M + +    L   + EV
Sbjct: 950  VET---DLNTEQREYAETIITCGDSLVNVINDILDFSKIESGKMDIEHIDFDLRHSIEEV 1006

Query: 655  KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
                  ++    I +    D  +    + D  RL Q+   +++NA+ F+ KG   V +  
Sbjct: 1007 MDLFGPRVALRGIDLIYEIDYNVPRQIIGDSLRLKQVLINLINNAIKFTEKGEVFVKISL 1066

Query: 713  ARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             + +     D  F+V + G  IPE+   ++F  F        R   G GLGL I E  + 
Sbjct: 1067 LKQDDHGGIDLAFTVTDTGIGIPEEKLSNLFKPFSQVDSSTTRKYGGTGLGLVISERLVK 1126

Query: 767  LHGGHVSISSSDEGVTTINCRI 788
            L G  +   S+    +  +  I
Sbjct: 1127 LMGDEIWAESNFGKGSVFSFSI 1148


>gi|242280564|ref|YP_002992693.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123458|gb|ACS81154.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 1006

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 93/394 (23%), Positives = 157/394 (39%), Gaps = 41/394 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +   L + Q    D++ + V +   DG     N           +     T +  +   
Sbjct: 333 RRTRGLEQYQF-FFDNVDDLVCITDMDGLFIRVNSGGADFLGYGRDEFLKKT-VFELVPP 390

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             R         LFA    S   E  ++  + E++   V    I        +    +VT
Sbjct: 391 YERESLRGLMNSLFAG-NNSLQFECPAVAKSGEIVYTDVRSRRITYHGQDVLLSVVRDVT 449

Query: 547 DSVRAERALTEKNEALRKA----------------------------DEIKNSFVQHVSY 578
           D  R E  L      L KA                            +  K+ F+  +S+
Sbjct: 450 DRKRDEEELQHYAAELLKAKEIEERNSAHMADTLKKLEEAMTRAEVANRTKSEFLAQMSH 509

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+ +I+G  D+L  ++   L S+Q  YV     S   LLNL++DILDL+ +++G +
Sbjct: 510 EIRTPMNSILGMADMLTDTR---LTSEQRNYVSIFRDSGKALLNLIDDILDLSKIESGKL 566

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
            L ++   ++DL++EV   ++    + N+      D    SF   D  R+ QI   +LSN
Sbjct: 567 TLEHTKFNIDDLVDEVAGIMSVSAWKKNLIFACHVDPYCPSFFEGDPTRIKQILVNLLSN 626

Query: 698 AMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           A+ F+  GS V+  ++             V+++G  I E+  K +F  FV       R  
Sbjct: 627 AIKFTDSGSVVLEISSSPGSQGKTILNMIVRDSGIGISEEKFKDIFENFVQADSSTTRKY 686

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G GLGLSI  + + L  GH+ + +   G     
Sbjct: 687 GGTGLGLSITRNLVELMNGHIDVRNVSSGGAEFR 720


>gi|42525106|ref|NP_970486.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
 gi|39577317|emb|CAE81140.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
          Length = 449

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 146/289 (50%), Gaps = 12/289 (4%)

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-----LTEKNEALRKADE 567
           SL G  E      LE++   L     ++  +        E A     L +  E   +   
Sbjct: 163 SLYGVAESNQWRWLEHAAWILIEDIILIIGIERIRGELHEMAYSKYQLVQAREEALQLSS 222

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK++F+ ++S+E+R+PL +IIGF+D+L+ ++   L+  Q+ YV+ I   S  LL+++ND+
Sbjct: 223 IKSTFLSNMSHEIRTPLNSIIGFSDILRDTR---LDKDQTDYVQTIQRCSDSLLHIINDV 279

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQR 686
           LD++ ++ G+++++     + +L  ++ +    K  E N++++V  D  + +F + D  R
Sbjct: 280 LDISKIENGLLQIDRHKFDVKELHTDIFKIFEAKCQEKNLQLEVDIDESIPAFALGDSHR 339

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           L QI   ++ NA+ F+ KG   + L+    +G +++ V + G  I  +    +F  F   
Sbjct: 340 LRQILMNLVGNAVKFTDKGRVCISLQRQPGSGHYVWKVSDTGRGIRLENMSKLFRSFSQE 399

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                    G GLGL I ++ + + GG + + S     TT +  +P +E
Sbjct: 400 DVSISRTYGGSGLGLMICKNLVEMMGGDIKVESKLGEGTTFHFTLPLEE 448


>gi|218130180|ref|ZP_03458984.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
 gi|217987684|gb|EEC54012.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
          Length = 867

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 101/506 (19%), Positives = 211/506 (41%), Gaps = 29/506 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  + +Q     ++  ++   +  +D   ++ F NR+  E+  +            ++  
Sbjct: 371 QQRLVEQRDEFDKMFCSIRDGLITYDTEMHIHFVNRALAEMLGLSSDTYMARSYEGQVAG 430

Query: 358 -----FLRSANKLP---EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                ++   N LP   EQ+        I       E  K T+   +G+ + +    +  
Sbjct: 431 SIFHIYMNGENILPTLLEQVVRDKKPVVIPEKAFMQENVKGTYFPVSGEVVPIFAK-DKL 489

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G   +  N++   +++ ++       G  I+  S  +  +  + R+K  +     L + 
Sbjct: 490 TGMAIVCRNISED-EMQRRF------FGMAIEESS--IYPWQYNTRLKCFHFPVGLLKRF 540

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             +  +       +                 + I+    + R S +           E+ 
Sbjct: 541 NYSDHTGYISREELDRVIHPEDLLRIRKHFDSIILGREPNSRMSFRLQNTAGGYEWWEFR 600

Query: 530 IIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                          +    ++      E  L    +   +AD++K++F+ ++S+E+R+P
Sbjct: 601 STAYEGLTADIPYMVLGVCQSIQRYKNTEDELIAARDKALQADKLKSAFLANMSHEIRTP 660

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+GF+DLLK    G  + +  Q+VE I+ + T+LL L+NDILDL+ +++G M   +S
Sbjct: 661 LNAIVGFSDLLKD-LEGFSSEEVQQFVETININCTLLLALMNDILDLSRIESGTMDFRFS 719

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
           +  L  ++ +V  S    M +  + ++       G S + D  RL Q+ + +++NA  F+
Sbjct: 720 SYNLTFIMQQVYDSQRLSMPQ-GVELRTDFPEGTGKSMITDSVRLKQVVNNLINNAKKFT 778

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           +KG  ++     D+G  +  V++ GS I ++    +F RF    +  Q  G GLGLSI +
Sbjct: 779 TKGYILLGYRVEDSGHTVIFVEDTGSGISDENLGHIFERFYKADNFTQ--GAGLGLSICQ 836

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
           + +    G ++++S     T    RI
Sbjct: 837 TIVERLNGTITVTSKLGKGTHFEVRI 862


>gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 15/273 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLT 585
            +I     +  L       + R E A  +  E  R+A   +  K+ F+ ++S+E+R+P+ 
Sbjct: 123 RVIRHARGRFKLEMELRESNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMN 182

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG   LL +     L ++Q  YV+ I  S   LL L+N ILD + ++AG ++L+Y   
Sbjct: 183 GVIGMASLLLSE---DLTAEQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPF 239

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704
              +L+ EV   +  +    N+ +       L + V  D  RL Q+   ++ NA+ F+  
Sbjct: 240 SPRELVQEVVLLLQPQAAAQNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEV 299

Query: 705 GST-VILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
           G   + L  A  +         F+VK++G  IP +    +F RF         +  G GL
Sbjct: 300 GGVAIELSPAPADPAAPDFSCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGL 359

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I    + L GG V + S     +T    +P
Sbjct: 360 GLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392


>gi|83646938|ref|YP_435373.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634981|gb|ABC30948.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 874

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 95/500 (19%), Positives = 179/500 (35%), Gaps = 23/500 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  +          +      I  ++      ++   F  L   +    +   +  E  +
Sbjct: 375 ETRLRQSEERYQLAVRGSNDGIWDWNLETGHMYYAPRFQALLGYEEGSFSN--TFTEFEQ 432

Query: 358 FLRSANKLP--EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            +   +K P  + +      E+ + +     T    W     +   +    N        
Sbjct: 433 KIHPQDKNPVLQAIKAHLESESPYDITHRLLTRSGEWRWFRSRGAAIRNKENVAIRMAGS 492

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++  Q   E +     +     ++++++G+      G I   N A   ++    + + 
Sbjct: 493 ISDIHQQKLAEAEAEEHAQHTQAILNNINDGIITVDEIGFIASFNRAAERIFHYNADSVI 552

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                R  A       +ES    L A++ +    E + ++G  +      +  S+  +  
Sbjct: 553 GYNLKRLFANYSDNDASESMSDYLSASLRSDASGEEQEIEGVRQNGERFPVGISVSEV-- 610

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTD 592
                         RAER        + +    D +KN F+  VS+ELR+PLT+I G   
Sbjct: 611 ------------HRRAERLFIVVVRDITERKRVDRMKNEFISTVSHELRTPLTSITGALS 658

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL    +G    + S++++    +S  L  L+ND+LD+  + AG +K ++S   +  L+ 
Sbjct: 659 LLLNGAVGQPTEEFSRFLQIAYKNSQRLALLINDLLDMEKITAGGVKYSFSVEPVMPLVE 718

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   +      ++ +  K+I          D  R  QI +  LSNA  FS +G TV +  
Sbjct: 719 QSIDTNRVYGQQHEVEYKIIHREDASLINVDPLRFQQILANFLSNAAKFSPQGCTVDISV 778

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
            R       SV + G  IP +    +F +F         Q+ G GLGL I         G
Sbjct: 779 QRRENYVRISVTDRGPGIPPEFYTRIFKKFSQADSSDRRQKGGTGLGLFISRELAKGMRG 838

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +   S      T    +P 
Sbjct: 839 RIDFESEVGKGATFYVELPL 858


>gi|328874987|gb|EGG23352.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1142

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 162/384 (42%), Gaps = 28/384 (7%)

Query: 419 LTVQVDL--ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           ++ Q  L    +     K     ++ + +G+ ++ P+G IK  N +  +        L  
Sbjct: 373 ISDQRSLLKSEELTESAKRMVSCVEFMQDGIEIWDPNGHIKYLNHSVAATSGYSRWEL-- 430

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPN 535
                 +    S   +  +      A IT   +    ++    + +  +  E +I P+ +
Sbjct: 431 ------LGKEFSFLIDNQELIPQMWATITGGKNWNGFIRTKCHVTNQVIYFETNISPVYD 484

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEI-KNSF-VQHVSYELRSPLTNIIGFTDL 593
           +   L + N       ++ + E++  + +   + K+   +  +S+++R+P++ IIG TDL
Sbjct: 485 SFEKLIYYNCIKRDVTQKRIDEESRTIEQEKTLEKSRLRLSMMSHDIRTPMSGIIGMTDL 544

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +    L+ +Q  Y++ I  SS  LL ++ND+LD++ ++AG  +++       D + E
Sbjct: 545 LSET---DLHPQQRHYLDIIKVSSNSLLTIINDLLDISKIEAGKFEVDNIEFDFRDAVEE 601

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL-- 710
           V + +  +     + +       +    + D  RL QI + +L N++ F+  G  +I   
Sbjct: 602 VCELMGERAQAKGLDLICSVHPLVPQKLIGDASRLKQILTNLLGNSVKFTDIGDIIIACT 661

Query: 711 --KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN------AHRGQRRGVGLGLSIVE 762
                +D+ D    VK+ G  I ++    +F  F S           Q  G GLGL+I +
Sbjct: 662 LQHIDQDDVDIRIEVKDTGIGIKKEALPLLFKAFTSAWQAEGGNITRQYAGSGLGLAICK 721

Query: 763 SFINL-HGGHVSISSSDEGVTTIN 785
               L   G + + S     +T  
Sbjct: 722 ELAQLAFNGEIGVESQYGVGSTFW 745


>gi|75761473|ref|ZP_00741438.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900606|ref|YP_002449017.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228968615|ref|ZP_04129600.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|74491034|gb|EAO54285.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218544459|gb|ACK96853.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228791107|gb|EEM38724.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 613

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 148/392 (37%), Gaps = 27/392 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 347

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            +  +  FV +VS+E
Sbjct: 348 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IEGERREFVANVSHE 393

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 394 LRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 452

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 453 LMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNAL 511

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 512 KYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 571

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  I  HGG +   S +   TTI   +P
Sbjct: 572 LAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|153864037|ref|ZP_01997058.1| signal transduction histidine kinase [Beggiatoa sp. SS]
 gi|152146467|gb|EDN72941.1| signal transduction histidine kinase [Beggiatoa sp. SS]
          Length = 612

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 82/266 (30%), Positives = 131/266 (49%), Gaps = 20/266 (7%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            N  +  +A  A+  K + L  A + K+ F+ ++S+ELR+PL +++    LL  +K G+L
Sbjct: 31  QNQAEMEKARAAIEFKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNL 90

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N KQ  Y + I ++ + LL L+NDILDL+ V+AG M++N   + L+DLL  ++Q  +   
Sbjct: 91  NEKQVSYAQTIQSAGSDLLTLINDILDLSKVEAGKMEVNIEALSLSDLLEMLEQKFSPLA 150

Query: 663 HENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------- 714
            E  +  +  ++D        D QRL QI + +LSNA  F+S G  ++L   R       
Sbjct: 151 SEKGLVFEKRLADDLPPFLQTDGQRLKQILNNLLSNAFKFTSLG-KIVLSIQRVTNIEDE 209

Query: 715 ---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
                           SV + G  IP+D  + +F  F         +  G GLGLSI   
Sbjct: 210 SYQLGKMEARENLIAISVIDTGIGIPKDKQQLIFEAFQQVDGTTSRRYGGTGLGLSISRQ 269

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              L GG +++ S +   TT    +P
Sbjct: 270 LARLLGGEITLHSEEGSGTTFTLYLP 295


>gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 456

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 15/281 (5%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAER------ALTEKNEALRKADEIKNSFVQHVS 577
           S++ Y+      + T+   +        ER       L    E    A+  K+ F+  +S
Sbjct: 165 SIVLYTCAYALESATLHAMLRDNMQHLEERVRERTSELQAAREMAESANLAKSEFLATMS 224

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  +IGFTD+L +   G +   Q++++ Y+  SS  LL+L+NDILDL+ ++A  
Sbjct: 225 HELRTPLNAVIGFTDVLLSRIYGEVTDIQAEFLGYVLQSSRHLLSLINDILDLSKIEADR 284

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILS 696
           M+L  S + +  L +     +  +  ++ IR+ + ++     +  AD ++L QI   +L+
Sbjct: 285 MELEPSDVDIRQLASGSLVMVKERAQQHRIRLTEEVAPAVPPTITADERKLKQIVFNLLA 344

Query: 697 NAMDFSSKGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           NA+ F+  G +V L      A    G  + +V++ G  +     + +F+ FV       R
Sbjct: 345 NAVKFTPDGGSVTLSVGLPPAEECEGGIMIAVQDTGIGLAAGDLERIFDPFVQADGSATR 404

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
           R  G GLGL +    + LHGG +   S   G  +T    IP
Sbjct: 405 RYEGTGLGLPLTRKLVELHGGTIRAESPGPGLGSTFRVIIP 445


>gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1084

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 130/254 (51%), Gaps = 11/254 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D+      L    E    A+  K++F+ ++S+++R+P+  IIGFT L  ++       + 
Sbjct: 552 DTQELNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNI--DDTDRV 609

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+    ASS  LL+L+ND+LD++ +++G + L    + L+D+L+++K  ++ +++   
Sbjct: 610 KDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYAKQ 669

Query: 667 IRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----- 720
           + + +   D        D+ RL QI   +LSNA+ F+  G TV ++  +  G        
Sbjct: 670 LELYMDVMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRGCGQY 729

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSS 777
            F +K+NG  + ++  + +F  F         + +G GLG++I ++ +++ GG + + ++
Sbjct: 730 EFRIKDNGIGMSQEFAQKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTIEVQTA 789

Query: 778 DEGVTTINCRIPSK 791
               T     +P +
Sbjct: 790 QGKGTEFTVCVPMR 803


>gi|153870226|ref|ZP_01999670.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152073308|gb|EDN70330.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 623

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 131/248 (52%), Gaps = 3/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + + A+           +A+  K+ F+ ++S+ELR+PL  I+G++++L+        S+ 
Sbjct: 107 ELLHAKNQAEHAQRLAEEANVTKSQFLANMSHELRTPLNAILGYSEILQEEAEELGQSEC 166

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ I ++   LL L+ND+LD++ ++AG M L+  T  L  ++ EV  +I  ++ +  
Sbjct: 167 ISDLQRIYSAGKHLLELINDVLDISKIEAGKMDLSLETFDLAIVIKEVISNIQPQVEKKA 226

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725
             ++V     LG+ ++D  +L Q+   +LSNA  F+ +G+  + +K  ++   F F V +
Sbjct: 227 NILEVKIADPLGTMLSDLTKLRQMLLNLLSNAAKFTEQGTISIEVKREQEETWFCFMVTD 286

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  + E+  K VF  F        RR  G GLGL+I + F  + GG++ ++S     +T
Sbjct: 287 NGIGMTEEQQKKVFQPFTQADASTTRRFGGTGLGLAITKQFAEMMGGYILVNSEFGKGST 346

Query: 784 INCRIPSK 791
               +P +
Sbjct: 347 FKLLLPIE 354


>gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 999

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 152/382 (39%), Gaps = 22/382 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-- 478
           +   E   +   +     +D  SE  +      G I   N     L    ++ +      
Sbjct: 357 RKTAEIALSQAERFLATVLDAASEISIIATNKHGLITAFNTGAEHLLGYSKHEMIGKQTP 416

Query: 479 ---HIRNIAATCS-----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              H+    A  S           +G+ +F  I    + E++      +      +   +
Sbjct: 417 ASLHLEEEVAARSVELTALLGYPVEGFRVFVDIAEQENHEKREWTYVHKNGRHIPVSLIV 476

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             + N    +T          E          ++ +++K+ F+  VS+ELR+PLT+I G 
Sbjct: 477 TTMRNEAGEITGYLGIAEDITE---------YKRMNKMKSEFISTVSHELRTPLTSISGA 527

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L+  S+   L  K  + ++    ++  L +L+ND+LD+  + AG +  +     L  L
Sbjct: 528 LGLIIGSRFEELPDKTQKLLKTAHRNNQRLSHLINDLLDIEKIAAGKLHFDMRLHELTLL 587

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + +  ++        ++ I++I D        D QRLLQ+ + +LSNA+ FSS    VI+
Sbjct: 588 VEQAIETNQHYGSSRDVSIRLICDANTVLVHVDSQRLLQVLANLLSNAIKFSSDHGQVIV 647

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
           +   DNG  I SV + G  I +   + +F RF        R   G GLGL+I    I   
Sbjct: 648 EVTTDNGKAIVSVIDQGPGINQAFRERIFQRFAQADSSDTRAKEGTGLGLAISRELIERM 707

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG +   S+    +     +P 
Sbjct: 708 GGQIDFESTMGKGSRFFFVLPL 729


>gi|260060733|ref|YP_003193813.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata
            HTCC2501]
 gi|88784863|gb|EAR16032.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata
            HTCC2501]
          Length = 1455

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 20/262 (7%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-------- 595
            +  D     R    + E     +E K++F+  VS+ELR+PLT+++GF  +++        
Sbjct: 965  HNADLYEQAREAKARAEDA---NEAKSAFLSTVSHELRTPLTSVLGFAKIIRKRLTEKIF 1021

Query: 596  ------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
                    K+     + S+ ++ + +    L  L+ND+LDLA +++G M  N   I L D
Sbjct: 1022 PAVTVDDQKIKRTMKQVSENLDVVVSEGERLTTLINDVLDLAKIESGRMDWNMKPIFLQD 1081

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            ++     + ++   E  +++K      L     D  +L+Q+   +LSNA+ F+ KGS V 
Sbjct: 1082 VIGRAVSATSSLFEEKKLQLKKNVPDDLPLINGDEDKLIQVVINLLSNAVKFTKKGS-VT 1140

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
            + A R+    I  V++ G  I E+    +F RF         + +G GLGL I    I  
Sbjct: 1141 IDAYREENQLIVEVQDTGIGIAEEDKHKIFERFRQAGDTLTDKPQGTGLGLPICREIIEH 1200

Query: 768  HGGHVSISSSDEGVTTINCRIP 789
            HGG + + S     +T    IP
Sbjct: 1201 HGGIIWMKSEPGVGSTFFFSIP 1222


>gi|301308093|ref|ZP_07214047.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833563|gb|EFK64179.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 882

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 168/371 (45%), Gaps = 24/371 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L+ K   L K     ++++   +    PD  +K  N         E    +       +
Sbjct: 390 KLKDKLLDLQKDNILIMNNIQASIYFIKPDYTVKWRNEVEFHDCIPEFGPANCFLVKNGV 449

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----T 538
              C+R              +    + +K +  T E      L     P+ +        
Sbjct: 450 KPYCTR------------CTVAKAMETKKQVDITNEFGDGKYLHILANPVLDEHDNLIGV 497

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++
Sbjct: 498 IFKKEDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE 557

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                  + +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS 
Sbjct: 558 NM---EDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSS 614

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K  +  +++  +          DR R+ Q+ +  ++NA+ F+++GS ++      + +
Sbjct: 615 RLKAQD-GVQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRHRDDE 672

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S  
Sbjct: 673 LYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQ 730

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 731 GKGSTFWFTLP 741


>gi|298374421|ref|ZP_06984379.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268789|gb|EFI10444.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 882

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 168/371 (45%), Gaps = 24/371 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L+ K   L K     ++++   +    PD  +K  N         E    +       +
Sbjct: 390 KLKDKLLDLQKDNILIMNNIQASIYFIKPDYTVKWRNEVEFHDCIPEFGPANCFLVKNGV 449

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----T 538
              C+R              +    + +K +  T E      L     P+ +        
Sbjct: 450 KPYCTR------------CTVAKAMETKKQVDITNEFGDGKYLHILANPVLDEHDNLIGV 497

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++
Sbjct: 498 IFKKEDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE 557

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                  + +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS 
Sbjct: 558 NM---EDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSS 614

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K  +  +++  +          DR R+ Q+ +  ++NA+ F+++GS ++      + +
Sbjct: 615 RLKAQD-GVQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRHRDDE 672

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S  
Sbjct: 673 LYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQ 730

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 731 GKGSTFWFTLP 741


>gi|262382637|ref|ZP_06075774.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295515|gb|EEY83446.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 882

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 168/371 (45%), Gaps = 24/371 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L+ K   L K     ++++   +    PD  +K  N         E    +       +
Sbjct: 390 KLKDKLLDLQKDNILIMNNIQASIYFIKPDYTVKWRNEVEFHDCIPEFGPANCFLVKNGV 449

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----T 538
              C+R              +    + +K +  T E      L     P+ +        
Sbjct: 450 KPYCTR------------CTVAKAMETKKQVDITNEFGDGKYLHILANPVLDEHDNLIGV 497

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++
Sbjct: 498 IFKKEDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE 557

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                  + +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS 
Sbjct: 558 NM---EDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSS 614

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K  +  +++  +          DR R+ Q+ +  ++NA+ F+++GS ++      + +
Sbjct: 615 RLKAQD-GVQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRHRDDE 672

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S  
Sbjct: 673 LYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQ 730

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 731 GKGSTFWFTLP 741


>gi|255012665|ref|ZP_05284791.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 882

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 168/371 (45%), Gaps = 24/371 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L+ K   L K     ++++   +    PD  +K  N         E    +       +
Sbjct: 390 KLKDKLLDLQKDNILIMNNIQASIYFIKPDYTVKWRNEVEFHDCIPEFGPANCFLVKNGV 449

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----T 538
              C+R              +    + +K +  T E      L     P+ +        
Sbjct: 450 KPYCTR------------CTVAKAMETKKQVDITNEFGDGKYLHILANPVLDEHDNLIGV 497

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    +VT   +AE  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL  ++
Sbjct: 498 IFKKEDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTE 557

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                  + +Y+  I++++ +LL L+NDILDLA ++AG ++   S + +N L ++++QS 
Sbjct: 558 NM---EDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSS 614

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K  +  +++  +          DR R+ Q+ +  ++NA+ F+++GS ++      + +
Sbjct: 615 RLKAQD-GVQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRHRDDE 672

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F VK+ G  I +D    VF RFV      Q  G GLGLSI +  I   GG + + S  
Sbjct: 673 LYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ--GTGLGLSICQMIIKRLGGDIGVESEQ 730

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 731 GKGSTFWFTLP 741


>gi|251778065|ref|ZP_04820985.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082380|gb|EES48270.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 564

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 83/402 (20%), Positives = 168/402 (41%), Gaps = 35/402 (8%)

Query: 391 TWHLPNGQ-TLHVIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKVQ-GETIDHLSEGV 447
           T  + NG   +   + S    G + + F N+  Q+ ++       + +    +  +  GV
Sbjct: 191 THKMANGDYRIRAKINSRDELGNLGISFNNMADQLQMKMNEIFDKQTRIESILRSMESGV 250

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-TCSRYYNESDGWDLFAAIITS 506
                +  +   NP    ++  ++N L     I  I+    + +  E    D    I+  
Sbjct: 251 IAVDNNNVVISINPYAERIFGIKKNILGESI-IEYISDYDINTFLEEDYEIDKEIKILHP 309

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            + E K  +  +           I  +     ++T  ++TD  + E              
Sbjct: 310 IERELKIKKSNI-----------INGIEMIGKVITIQDITDIKKLEL------------- 345

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            ++  FV +VS+EL++PLT+I GF + L+       N  + +++  I   S  L  L+ND
Sbjct: 346 -MRTQFVANVSHELKTPLTSIKGFAETLR---YVEDNETREKFLNIIDKESERLSRLIND 401

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           IL L+++++ I   N    +   ++ +V   +    +  +I ++   D      + D+ +
Sbjct: 402 ILVLSSIESNISTPNDE-FLPKVIIEDVINMVRKLANNKDINLEF-YDDNQELILGDKDK 459

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
             Q+   ++ NA+ +S  GS V + +    G +   + +NG  IP++    VF RF    
Sbjct: 460 FYQLTLNLVENAIKYSENGSKVKVVSYSKQGYYYLEISDNGIGIPKEDLPRVFERFYRVD 519

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              ++ G GLGL+IV+  +    G +++ S+    +T   RI
Sbjct: 520 KSRKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRI 561


>gi|255037080|ref|YP_003087701.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949836|gb|ACT94536.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 667

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 145/346 (41%), Gaps = 32/346 (9%)

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             G  ++ N   +  ++   N +        +     R  +++        IIT     +
Sbjct: 190 RKGLARIINERDQHTFRAHYNHMRYSVKDAEVVEKEFRLKHKNGSE---IWIITREVPFK 246

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           ++ +G ++ +  + ++ +   +                 AE+ L +  +   +A  IK+ 
Sbjct: 247 RNARGRVQEVLGTAIDITARKI-----------------AEKELIQAKKDAEEATRIKSD 289

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  IIGFTDLL +S       ++ QY+  I  S+  LL ++NDILD +
Sbjct: 290 FLSTMSHEIRTPMNAIIGFTDLLLSSGF---TGQEQQYLNTIKYSADNLLVILNDILDFS 346

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            ++AG   L      L + L  + ++   +  E +I+        +   V  D  RL QI
Sbjct: 347 KIEAGKFGLENFEFDLREKLGYLMKTFEIRAKEKSIQFTFQCSTDVPQIVMGDPYRLNQI 406

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
              ++ NA+ F+ +G +V +    D       D    V ++G  I ED    +F+ F   
Sbjct: 407 MVNLIGNAIKFTEEGGSVEVSVHLDKDHGDSIDLKIDVSDSGIGISEDKLSVIFDSFSQA 466

Query: 746 AHR---GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +        G GLGLSI      L  G +S  S+    +T    +
Sbjct: 467 HNNNAVRNFGGTGLGLSITRKITELMNGSISARSTLGKGSTFTVVL 512


>gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 909

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 10/258 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    ++TD + AE+AL E  E   KA + K+ F+  +S+E+R+PL  IIG TD+L  S 
Sbjct: 498 VFVCTDITDRITAEQALIEAREQAVKASQAKSEFLARMSHEIRTPLNAIIGITDILAES- 556

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +QSQ V   + +   LL L+NDILD++ ++A  ++L      L      +   +
Sbjct: 557 --DLKPEQSQLVRVCANAGENLLALINDILDISKIEAREVRLEKIAFDLESTTTNICDIL 614

Query: 659 ATKMHENNIRIKVISDGK---LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             K  E +++  +  +         + D  RL QI   ++ NA+ F+ +G   +L     
Sbjct: 615 KQKATEKDLKFSLTVNLPKNRAPLVIGDPTRLRQILFNLIGNAIKFTQEGEIAVLLDFDS 674

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
           +      F++++ G+ IP+D    +F  FV       R   G GLGL+I ++ + L GG 
Sbjct: 675 SSQKFVRFTIRDTGTGIPKDKQHLLFQSFVQADSSITRKFGGSGLGLTISKNLVELMGGR 734

Query: 772 VSISSSDEGVTTINCRIP 789
           +   S +   ++    +P
Sbjct: 735 IWFQSEEGSGSSFYFTVP 752


>gi|86141300|ref|ZP_01059846.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831859|gb|EAQ50314.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 906

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 83/358 (23%), Positives = 160/358 (44%), Gaps = 10/358 (2%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           + +++L +G  +F   G IK  N    +++   +  L  G+ I  +         +SD  
Sbjct: 264 DVLENLLDGYILFDAQGTIKDCNTLSTNIFGLSKKEL-IGSSIYALLPQDVTSAFKSDIS 322

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            L    +      RK +    +  +    E S     +       + + D  +    L  
Sbjct: 323 SLHQNKLPKLLGNRKEVDLKNKKGNIEPYEISFSNNYSEPVETFSIFIRDITQRNDTLR- 381

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              +  +A E K++F+ ++S+E+R+PL  I+G ++LL  + L        + +E IS S+
Sbjct: 382 AKASAERAAEAKSTFLSNMSHEIRTPLNVILGLSELLIKNGLDD-KKLLEKNLEGISFSA 440

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL++V+DILD + ++AG + L      L ++L+ +  +   K  E  +++    D ++
Sbjct: 441 KNLLSIVDDILDFSKIEAGKLSLQALDFNLKEVLSNLTSTFEIKAREKGLQLITTIDERI 500

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPE 732
               V D+ RL QI + ++ NA+ F+ +G       +++   D     F V + G  IP+
Sbjct: 501 PDIIVGDQYRLNQIITNLIGNAIKFTKQGKITLELQLIEETTDKVTINFIVTDTGIGIPK 560

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +    +F  F         +  G GLGLSI    INL GG + + S     ++ + ++
Sbjct: 561 NQLPHIFKSFYQVDEPEHAKINGTGLGLSITHELINLQGGSLFVESEPGKGSSFHFKL 618


>gi|284036959|ref|YP_003386889.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283816252|gb|ADB38090.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 906

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 128/249 (51%), Gaps = 4/249 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +  + L+  NE L+++DE K+ FV  V++E+R+PLT+I   +++L        + +Q
Sbjct: 659 ELQQMTQHLSLANERLKQSDEQKDDFVSTVTHEIRTPLTSIRALSEILHDQADMDESMRQ 718

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  +   +  L  L+N +LDL   D+G   L+   I + DL+ E  +++A    +  
Sbjct: 719 -EFLSRVIRETERLSRLINQVLDLERYDSGRYHLSTERISMVDLVAEAVENVAQLARDKQ 777

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKN 725
           + +++           DR RL+Q+   +LSNA+ FS  G   V +     +     +V++
Sbjct: 778 VTLEICPTQAQPVVDGDRDRLMQVLINLLSNAIKFSPAGTGHVTVCLTIRDERVNLTVRD 837

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  I  D+ + +F +F    ++   + +G GLGL+I +  I LH G +++SS       
Sbjct: 838 NGIGIEPDVQQLIFEKFYQATNQTLRKPKGSGLGLAITKKIIALHNGQITVSSVPGEGAE 897

Query: 784 INCRIPSKE 792
             C +P+ E
Sbjct: 898 FTCSLPACE 906


>gi|307155062|ref|YP_003890446.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985290|gb|ADN17171.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1305

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 130/247 (52%), Gaps = 6/247 (2%)

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                    L +  E    A++ K+ F+ ++S+ELR+PL  I+GFT LL      SLN KQ
Sbjct: 814  QQAELIEELKKAKERADAANQAKSEFLANMSHELRTPLNAILGFTQLLARD--SSLNQKQ 871

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +V  I  S   LL+L+ND+L+++ ++AG + LN +   L  LLN +++    K    N
Sbjct: 872  QDFVGIIGRSGEHLLSLLNDVLEMSKIEAGRITLNENDFDLYRLLNILEEMFQLKAQSKN 931

Query: 667  IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-FIFSV 723
            +++    D  +  ++  D  +L Q+   ++ N + F+  GS  + ++ + +N    +F V
Sbjct: 932  LQLIFHCDPDVPQYIKTDESKLRQVLINLIGNGIKFTETGSVMLRVRVSPENSQAILFEV 991

Query: 724  KNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            ++ G  I  +    +F  FV   + R  + G GLGL I + F+ L GG++S++S+    +
Sbjct: 992  EDTGPGIGTEELDILFQAFVQTVSGRKSQEGTGLGLPISQKFVELMGGNISVNSTLHKGS 1051

Query: 783  TINCRIP 789
            T +  IP
Sbjct: 1052 TFSFEIP 1058


>gi|197124634|ref|YP_002136585.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196174483|gb|ACG75456.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 1843

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 4/274 (1%)

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
             S++ LE     L N +  L     ++   A R+L EK E L+     K+ F+ ++S+EL
Sbjct: 1403 RSNAELEAQAAEL-NEKARLLEQKNSEVELASRSLEEKAEQLQLISRYKSEFLANMSHEL 1461

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+PL +++  + +L  ++ G+L  +Q ++   +  S   LL L+N+ILDL+ ++AG M +
Sbjct: 1462 RTPLNSLLILSKMLAENRDGNLTPEQVKFASTVYTSGHELLGLINEILDLSKIEAGKMPI 1521

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAM 699
                  L  + ++++Q+         +  +V     L      D  RLLQI   ++SNA 
Sbjct: 1522 EPRDTRLESVRDDLEQTFRHVAEHKGLGFQVRMGPDLPERIHTDPTRLLQILKNLISNAF 1581

Query: 700  DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
             F+ +G  V+       G   F+V++ G  IP D  K +F  F         +  G GLG
Sbjct: 1582 KFTERGEVVLDVGPAAGGALAFAVRDTGIGIPADKQKLIFEAFQQADGTTSRKYGGTGLG 1641

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            L+I      L GG + + S+    +     +P++
Sbjct: 1642 LTISREIARLLGGSIEVKSAPGRGSVFTLVLPAR 1675


>gi|67922645|ref|ZP_00516150.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
 gi|67855493|gb|EAM50747.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
          Length = 731

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 16/240 (6%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L + +  K+ F+  + +E+R+PL  + G T LL  ++   L+ +Q ++V  I  S   LL
Sbjct: 72  LEELNLAKSEFLSMMGHEIRTPLNAVTGMTGLLLDTE---LSDQQKEFVNIIRNSGENLL 128

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
            ++N+ILD + ++A  ++L  +   L   + EV +   ++  +  + +  + +    S  
Sbjct: 129 TMINNILDFSKIEANKLELEEAPFELGLCIEEVLRLFVSQASQKKLELAYLLEPNTPSGI 188

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG---------DFIFSVKNNGSSI 730
           V D  RL QI + ++ NA+ F+ +G  VI + +    G         +  F+VK+ G  I
Sbjct: 189 VGDSTRLKQILANLIGNAVKFTPEGEVVIYVSSTVIEGGEGEVNPNYELRFAVKDTGIGI 248

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P++ C  +F  F  V  +   Q  G GLGL I +    L GG + + S +   +T N  +
Sbjct: 249 PKERCHRLFQPFSQVDASTTRQYGGTGLGLVISKRLSELMGGKMWVHSEEGKGSTFNFTL 308


>gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 15/273 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLT 585
            +I     +  L       + R E A  +  E  R+A   +  K+ F+ ++S+E+R+P+ 
Sbjct: 123 RVIRHARGRFKLEMELRESNRRLEEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMN 182

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG   LL +     L ++Q  YV+ I  S   LL L+N ILD + ++AG ++L+Y   
Sbjct: 183 GVIGMASLLLSE---DLTAEQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPF 239

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704
              +L+ EV   +  +    N+ +       L + V  D  RL Q+   ++ NA+ F+  
Sbjct: 240 SPRELVQEVVLLLQPQAAAQNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEV 299

Query: 705 GST-VILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
           G   + L  A  +         F+VK++G  IP +    +F RF         +  G GL
Sbjct: 300 GGVAIELSPAPADPAAPDFSCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGL 359

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I    + L GG V + S     +T    +P
Sbjct: 360 GLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392


>gi|308175749|ref|YP_003922454.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM
           7]
 gi|307608613|emb|CBI44984.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM
           7]
          Length = 611

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 159/416 (38%), Gaps = 32/416 (7%)

Query: 385 SETHKDTWHLPNGQTLH-VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETID 441
           S+  K    L  G     V    +   G +   F +LT ++ D +       +     I 
Sbjct: 211 SDMRKQAMELAKGNFSRKVRKYGHDEIGQLATTFNHLTRELEDAQAMTEGERRKLSSVIA 270

Query: 442 HLSEGVAVFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           ++++GV     +G I L N PA   L  + E  L               + +  +  D  
Sbjct: 271 YMTDGVIATNRNGAIILLNSPALELLNVSRETALEMPITSLLGIKENFTFEDLVEQQDSM 330

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              I   DDE   L+          + +S+I   + +       + D    E        
Sbjct: 331 LLEIDR-DDETTVLR----------VNFSVIQREHGKIDGLIAVLYDVTEQE-------- 371

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              K D  +  FV +VS+ELR+PLT +  + + L      +      +++      +  +
Sbjct: 372 ---KLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWEN-KEIAPRFLMVTQNETERM 427

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + LVND+L L+  D+   + N   I +   ++ +         E ++        +    
Sbjct: 428 IRLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFE-MTKEQHVEFIRELPDRNLYV 486

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSV 738
             D+ ++ Q+   I+SNA+ +S +G  V      +  +     SVK+ G  IP+   + V
Sbjct: 487 EIDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKV 546

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+RF        R   G GLGL+I +  +  HGG +   S +   T I   +P KE
Sbjct: 547 FDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLPYKE 602


>gi|300864747|ref|ZP_07109599.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300337257|emb|CBN54747.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 1008

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 156/384 (40%), Gaps = 34/384 (8%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
              +    +      ID +++G+ V   +GRI   NPA  +++  +   L+         
Sbjct: 389 ATAELQDTMSYLASIIDTIADGLLVTNYNGRITRFNPALTNMFALDRLDLTGKFTEEIFG 448

Query: 485 ATCSRYY-NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           +  S+   N        + +  +    R +    + +L  S  + S  P      +    
Sbjct: 449 SEVSKLIDNTKQPPHEISTVELALQGGRFAKGSAVAILKKSASD-SQAPTYIGSVI---- 503

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-- 601
                      L     A ++ D++K  F+  VS+ELR+PLT+++GF  L++     +  
Sbjct: 504 -----------LIRDITAEKEVDQMKTDFISTVSHELRTPLTSVLGFAKLIQKKLEENVF 552

Query: 602 -----LNSKQSQ-------YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
                 + K  +        ++ I +    L +L+ND+LD+A ++AG +      + ++D
Sbjct: 553 PIVVTEDKKVQRAVKQVGDNLQIIVSEGQRLTDLINDLLDVAKMEAGKIDWKMQPMKVDD 612

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L++    +         +      +  L   V DR +L+Q+   +LSN++ F+ KG  V 
Sbjct: 613 LIDRAIAATFALFENKGLEPIKDIEENLPELVGDRDKLIQVMINLLSNSIKFTDKG-FVT 671

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
            +A +       S+ + G  I E     VF +F         + +G GLGL I +  I  
Sbjct: 672 CQAKKIGDKIKISIIDTGMGISEADQPKVFEKFKQVGETLTDKPKGTGLGLPICKQIIEH 731

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           HGG + + S     +  +  +P K
Sbjct: 732 HGGKIWVESELGKGSNFSFILPLK 755



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 51/143 (35%), Gaps = 23/143 (16%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND- 353
            +    + D +++   I+  +   + + + N  +   N +   ++ +D   L    + + 
Sbjct: 387 TAATAELQDTMSYLASIIDTIADGLLVTNYNGRITRFNPALTNMFALDRLDLTGKFTEEI 446

Query: 354 ---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              E+ + + +  + P +++             + E          G  + ++  S    
Sbjct: 447 FGSEVSKLIDNTKQPPHEIS-------------TVELALQGGRFAKGSAVAILKKSASDS 493

Query: 411 ------GTIWMFENLTVQVDLET 427
                 G++ +  ++T + +++ 
Sbjct: 494 QAPTYIGSVILIRDITAEKEVDQ 516


>gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1284

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 145/382 (37%), Gaps = 22/382 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T     E       +     ++    GV++   DG I  +N     L    +       
Sbjct: 421 VTAIRAREGALADSERRLRTILEQSPVGVSIGRADGTIAFANARAAELAGQPQEDFVGSR 480

Query: 479 HIRNIAATC-----SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           H   +  T          +   G  L      + D    S    L+ L  +  E      
Sbjct: 481 HALALPGTSGDPAGDEGRDADSGGVLVREAELAVDRPDGSRVWALQTLQRTSFE------ 534

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    ++T    AE AL    E    A   K  F+  +S+E+R+P+  ++G  +L
Sbjct: 535 GEPAVLAWSYDITARKLAEEALRAAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLEL 594

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +    L  L+ +Q   V  +  S   LL +++DILDL+ ++AG ++L    +   DL+  
Sbjct: 595 MA---LTPLDEEQRTLVSTMRDSGAALLRIIDDILDLSKIEAGKLELEELDLSPADLVEG 651

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILK 711
           V   +A + H+  + +    DG +      D  RL QI   +  NA+ F+ +G  V  ++
Sbjct: 652 VADLLAPQAHQKGLALICDIDGSVPERLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRVQ 711

Query: 712 AARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           AA            +V+++G  I  +    +F  F        RR  G GLGL+I    +
Sbjct: 712 AAATADPTLIRLTVAVEDSGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLV 771

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
              GG + + S     +     
Sbjct: 772 ERMGGRIGVESVPGRGSIFRFT 793


>gi|20808059|ref|NP_623230.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516640|gb|AAM24834.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 456

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 161/366 (43%), Gaps = 26/366 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N         +  ++ GV  F    RI + N + + +   EE  L+ G  +  +  +
Sbjct: 105 EELNDRNATLEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLT-GRRVFEVIRS 163

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQTMLTFVN 544
                  S  +++F  +  +     KSL+       +  L+  I P+  P +   L FV 
Sbjct: 164 -------SKLYEVFETLRKNKVLSSKSLELN---FFNKHLKVYISPILHPVSHVNLGFVL 213

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V D +   R L          ++I++ FV +VS+ELR+PLT+I GF + L++  + +  +
Sbjct: 214 VIDDITEMRKL----------EKIRSEFVANVSHELRTPLTSIRGFIETLRSGAIENPEA 263

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++  +++ I   +  L  L+NDIL L+ ++          I ++  + ++   +     +
Sbjct: 264 REK-FLDIIDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKD 322

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +I +K   +    + +A+R R  Q+   ++ N + ++ +G  V +    +    I  V+
Sbjct: 323 KSITLKRDLNCGNLTIIANRDRFHQMMINLIDNGIKYTQEGGFVKVSTRLEGEKIIIEVE 382

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP+D    +F RF        R   G GLGL+IV+  +    G +S+ S     T
Sbjct: 383 DNGIGIPKDKIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGT 442

Query: 783 TINCRI 788
               R 
Sbjct: 443 KFTIRF 448



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 15/223 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +ND+      IL ++   +  FD    +   N S  ++  I+   L        + E 
Sbjct: 105 EELNDRNATLEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLTGR----RVFEV 160

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +RS+        ++T ++N     KS E +    HL    +  +   S+   G + + ++
Sbjct: 161 IRSSKLYE---VFETLRKNKVLSSKSLELNFFNKHLKVYISPILHPVSHVNLGFVLVIDD 217

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T    LE   +  V      +        +    G I+          +  E  L    
Sbjct: 218 ITEMRKLEKIRSEFVANVSHELRT-----PLTSIRGFIETLRSGAIENPEAREKFLDI-- 270

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            I   A   +R  N+         +   +  E+  +   +E +
Sbjct: 271 -IDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDI 312


>gi|170737005|ref|YP_001778265.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169819193|gb|ACA93775.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 1194

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/517 (19%), Positives = 189/517 (36%), Gaps = 44/517 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  + DQL+    ++ +L   +A  D        N ++   + +    L    + +    
Sbjct: 327 EHELADQLSFREALMESLPYPLAAKDSANRYIALNHAYETAFSVKREDLIGRTTLEA--- 383

Query: 358 FLRSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQT------LHVIVTSNPRG 410
                  LP +  W      +   V   +  H    +L +G          +     P G
Sbjct: 384 -------LPVEPAWSMQIHTMSEQVQDQNRAHHAEVNLLDGDHKLRSWLYWMHPFQLPSG 436

Query: 411 ---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPDGRIKLSNPAF 463
              G +    ++T   D E +   L +       HL   V VF     PDG ++     +
Sbjct: 437 KPGGLLVTLVDVTTIRDAEQRARALDQRLRRVTSHLP--VVVFEFRRTPDGALRF---PY 491

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLS 522
                     L   +   +     SR + +       A   ++      S+    +    
Sbjct: 492 VGGDTRAMWDLDALSMEADALTALSRVHPDDRPLIKSAVKYSALTMTPISIDFRCVSHGR 551

Query: 523 DSVLEYSIIP---LPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSY 578
           +  +     P   L          +     +A+   L    EA   A   K+ F+  +S+
Sbjct: 552 ERWIHTDATPQTELNGTMFWSGVWSDVTHAKAQAEELARAKEAAEIAAASKSRFLATMSH 611

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  IIG  +LL+     SL++ Q + +  I  S+  L+ +++D+LD + +DAG +
Sbjct: 612 EIRTPMNGIIGMLELLRHE---SLSTNQQRMLHMIGESAMTLMQILDDVLDFSKIDAGHL 668

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSN 697
           ++      L  L++ V    AT  H+  + ++     +L      D  RL QI   ++SN
Sbjct: 669 EILTEPTDLRALVDGVSAIAATLAHDKGLVVRNSVSSQLSAELKVDGLRLRQILINLISN 728

Query: 698 AMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR 751
           A+ F+  G   + +             F+V + G  I     + +F  F         + 
Sbjct: 729 AIKFTENGEVGIDISVFDQREACQRVHFTVHDTGIGIAPAQLQCLFAPFTQADSSIVRRF 788

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+I +  + L  G V I S+    T +  ++
Sbjct: 789 GGTGLGLAICKRLVELMHGSVHIESTPGFGTRVTVKL 825


>gi|315641356|ref|ZP_07896432.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952]
 gi|315482929|gb|EFU73449.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952]
          Length = 613

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 152/387 (39%), Gaps = 23/387 (5%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  Q++   +     +      + H+++GV      G++   N    SL  
Sbjct: 237 GQLADTFNQLAEQIEETQEAIESERNRLNSVLSHMTDGVIATDRRGKVITINEMALSLLD 296

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +    + G  I ++      Y   +        ++     E +S Q  L       +++
Sbjct: 297 KKNEEEAIGQSILDLLEIGEEYTLRTLLESSNEMLLHRSSSEVESGQLILR------VDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K ++ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SMIRRDSGFISGIVAVIHDVTEQE-----------KTEKERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L+L+ +D G  +L    +  N
Sbjct: 400 SYLEALSDGAWRD-EEIAPDFLKVTLDETDRMIRMINDLLNLSRMDGGNAQLQKEYVNFN 458

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L++ V       +   E    I+     +      D  R++Q+   I++NA+ +S  G 
Sbjct: 459 ELVHFVLNRFDMMVTGKEKRYVIRRDFTQRDLWVEVDADRMIQVIDNIMNNAIKYSPDGG 518

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESF 764
            + +  +  +   + S+++ G  IP+     +F RF         ++ G GLGL+I    
Sbjct: 519 VITVSLSETHNHILLSIRDQGMGIPKVDLAKIFTRFYRVDKARARKQGGTGLGLAISREV 578

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  H G +   S +   +T    +P +
Sbjct: 579 IKAHKGSIWAESKENYGSTFYISLPYE 605


>gi|242242957|ref|ZP_04797402.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|242233558|gb|EES35870.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|319401006|gb|EFV89225.1| his Kinase A domain protein [Staphylococcus epidermidis FRI909]
          Length = 565

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 164/377 (43%), Gaps = 40/377 (10%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         T++++   V +    G I ++N A+  ++   +  +  
Sbjct: 210 DLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYQVFN-PDQMVEN 268

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
            ++I  I  +  +             II SF  E+   + L+  +  +     + S IP+
Sbjct: 269 KSYIGFIDDSIEKL------------IIESFRTEKVIYEQLEVDINNVHTKYFDVSCIPI 316

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                      V         +      L+K + ++  FV +VS+EL++P+T+I GF + 
Sbjct: 317 LTKSKKNLQGMVV--------VLHDITNLQKLENLRREFVANVSHELKTPITSIKGFAET 368

Query: 594 LKTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           L     G+ N +QS   ++  I   S  + +LV D+LDL+ ++    +L  + + L++L 
Sbjct: 369 LIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIEQQK-ELEINYMNLSELA 424

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             +  ++ T+     I+I+   +  +    A   ++ Q+ + +LSNA+++SS+ + VI++
Sbjct: 425 INIIDNLQTQAQNKRIKIQSEIEKDVI-IEAHENKIAQVITNLLSNAINYSSEDNKVIVR 483

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
             R++      +++ G  I E   K +F RF            G GLGLSI +  +  H 
Sbjct: 484 VYRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHN 543

Query: 770 GHVSISSSDEGVTTINC 786
           G + + S     +    
Sbjct: 544 GRIDVKSEPGKGSIFKV 560


>gi|302342987|ref|YP_003807516.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639600|gb|ADK84922.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 610

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 156/369 (42%), Gaps = 24/369 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +           I  + +G+ VF  + R+   NPA R+L    E  L  G+     A +
Sbjct: 259 EQIIAEKNKSEAIISSIEDGLVVFDTNLRVASINPAARALL---EMPLGQGS-----APS 310

Query: 487 CSRYYNESDGWDLFAAIIT-----SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           C+    +     +  A +      +  DER+ +       +   L +S+  +      L+
Sbjct: 311 CADILPDERLCQIIRAAVENGARPALPDERRVIAIRKGETTKECL-FSVTAIRGGDRRLS 369

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V           L      L++ + +K+ FV   S+ELR+PLT++     LL    +  
Sbjct: 370 GVV---------LLLRDVTRLKEVERLKSEFVMAASHELRTPLTSLGMSVGLLLEHAVAG 420

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +  + ++        +  LV+D+LDL+ ++AG ++L + ++ +  L +  K     +
Sbjct: 421 LAERDRELLQAAHEEIQRMKALVDDLLDLSKIEAGRIELEFESVSVATLFDHAKAVFKNQ 480

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           +  N + +    D       AD  ++  + + ++SNA+ +  KG  + L A+        
Sbjct: 481 LEMNGVSLTAELDAAAPPVRADANKITWVLTNLISNALRYVGKGGHIALAASVIGPCAHL 540

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV+++G  IP +    +F +FV      +  G GLGL+I +  +  HGG + + S+    
Sbjct: 541 SVRDDGPGIPPEFQSKIFQKFVQVQG-REAGGTGLGLAICKEIVRAHGGAIWVESAPGQG 599

Query: 782 TTINCRIPS 790
           +     +P 
Sbjct: 600 SKFIFTLPL 608



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS------N 352
             +  +   +  I+ ++   + +FD N  +   N +   L E+ L    + PS      +
Sbjct: 259 EQIIAEKNKSEAIISSIEDGLVVFDTNLRVASINPAARALLEMPLGQ-GSAPSCADILPD 317

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           + L + +R+A +   +      +  I    +  ET K+           +        G 
Sbjct: 318 ERLCQIIRAAVENGARPALPDERRVI--AIRKGETTKECLF----SVTAIRGGDRRLSGV 371

Query: 413 IWMFENLTVQVDLET 427
           + +  ++T   ++E 
Sbjct: 372 VLLLRDVTRLKEVER 386


>gi|13475462|ref|NP_107026.1| two component histidine protein kinase [Mesorhizobium loti
            MAFF303099]
 gi|14026214|dbj|BAB52812.1| two component histidine protein kinase [Mesorhizobium loti
            MAFF303099]
          Length = 1348

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/488 (22%), Positives = 209/488 (42%), Gaps = 10/488 (2%)

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQL 369
            +L  L V + I   ++ L + N  F++L   D L  L        L     + +   +  
Sbjct: 857  LLGKLPVPLLIHSGDQ-LHYANDEFLDLTGYDTLEDLEDAGGLGALFADPYADDGTSDGS 915

Query: 370  NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE--T 427
            +     +         +    +    +G+ L ++V  +           +  +      +
Sbjct: 916  DRALRLKTRDGQEFPIDAILRSVPWRDGKALMLVVRRSGDDDAPVALHAVGEEPTQPDIS 975

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            +    +      ID  ++GV + G DG I+  +    +L+  + + ++ G    ++ A  
Sbjct: 976  ELKARIAEMRTIIDTATDGVVLIGSDGTIRSISRPAEALFGFDSDEVT-GKPFASLFAIE 1034

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVT 546
            S+         L    + S  ++ + + G         L  +I  LPN         ++T
Sbjct: 1035 SQRAARDYLTGLSEPGVASVMNDGREVIGREAQGRFIPLFMTIGRLPNDSGFCAVVRDIT 1094

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605
               RAE  LT+      +A  +K  F+  +S+E+R+PL  IIGF++L+   K G + N +
Sbjct: 1095 QWKRAEEDLTQARAVAERASSLKTDFLARISHEIRTPLNAIIGFSELMVDEKFGPVANDR 1154

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               Y+  I+ S   +L+LVND+LD++ ++AG  ++ Y  + LND L E    +  + +  
Sbjct: 1155 YRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSLNDTLAETVAMMQPQANRE 1214

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVK 724
             + I+     +L   VAD + + QI   ILSNA+ ++  G  VI+  A   +GD +  V+
Sbjct: 1215 RVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQVIVSTAYETSGDVVMRVR 1274

Query: 725  NNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  + +   +     F   NA +  R  G GLGL + ++ +  +    +I+S+    T
Sbjct: 1275 DTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAMVEANRARFTINSTPGEGT 1334

Query: 783  TINCRIPS 790
             +    PS
Sbjct: 1335 LVEVAFPS 1342



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 75/263 (28%), Gaps = 25/263 (9%)

Query: 197  VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK------ 250
             L   L   +        + +AN  +   T  + +   +  G    LF +          
Sbjct: 856  SLLGKLPVPLLIHSGD-QLHYANDEFLDLTGYDTLEDLEDAGGLGALFADPYADDGTSDG 914

Query: 251  -----RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI------ 299
                 R+ +    E      + ++   + K+  +V   +   +A +A+    E       
Sbjct: 915  SDRALRLKTRDGQEFPIDAILRSVPWRDGKALMLVVRRSGDDDAPVALHAVGEEPTQPDI 974

Query: 300  -TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL-LE 357
              +  ++     I+   T  + +   +  ++  +R    L+  D   +   P      +E
Sbjct: 975  SELKARIAEMRTIIDTATDGVVLIGSDGTIRSISRPAEALFGFDSDEVTGKPFASLFAIE 1034

Query: 358  FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIWMF 416
              R+A      L+       +    +          +P    L + +   P   G   + 
Sbjct: 1035 SQRAARDYLTGLSEPGVASVMNDGREVIGREAQGRFIP----LFMTIGRLPNDSGFCAVV 1090

Query: 417  ENLTVQVDLETKYNTLVKVQGET 439
             ++T     E        V    
Sbjct: 1091 RDITQWKRAEEDLTQARAVAERA 1113


>gi|255011543|ref|ZP_05283669.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 3_1_12]
          Length = 557

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 182/384 (47%), Gaps = 22/384 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q   + K   + ++    + H+   V V   D ++  +N    +    +      G  ++
Sbjct: 29  QSASDRKLENVNRLFDAILTHIHAYVLVIDSDFKVLKTNYYDLTHLNPDGKEKRVGDLLQ 88

Query: 482 NIAATCSRY----YNESDGWDLFAAIITSFDD--ERKSLQGTLELL--SDSVLEYSIIPL 533
              A  ++     +       +  AI  +F    E   LQ +L +    D  ++ +++  
Sbjct: 89  CQNALSAKGGCGTHAFCQECPVRGAIGAAFRQKSEFTDLQSSLNIAIGEDEFIKCNVMIS 148

Query: 534 P-------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                     + +LT  ++T     E AL E  E    AD  K++F+ ++S+E+R+PL  
Sbjct: 149 GVFMTLDGEDRMVLTVHDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNA 208

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL      +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + 
Sbjct: 209 IVGFSELLA---AATEEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVD 265

Query: 647 LNDLLNEVKQSIATKM-HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           +N LL +++Q    K+ +++ ++I   +        +DR R+ Q+ S  +SNA+ F+++G
Sbjct: 266 INLLLADLEQLFHMKIGYDSPVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTEG 325

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
           S + +          F V + GS I  D    VF+RFV    +  + G GLGLSI ++ +
Sbjct: 326 S-IRIGYKPCENGLRFYVTDTGSGISADKLGGVFDRFVRL--QSDKNGTGLGLSICKTIV 382

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
           N  GG +   S     +T    +P
Sbjct: 383 NKLGGEIGAESVVGQGSTFWFTLP 406


>gi|117925572|ref|YP_866189.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609328|gb|ABK44783.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 685

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 121/246 (49%), Gaps = 10/246 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           ++ E  LT       +A++ K+ F+ ++S+E+R+P+  IIG  DLL  ++   LN  Q +
Sbjct: 147 MQREEELTASRLKADQANQAKSEFLANMSHEIRTPMNAIIGMADLLLETE---LNKDQRR 203

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV+  + +   LL L+ND+LDL+ V+A  ++L +    L  L+    +    +  E  ++
Sbjct: 204 YVQIFARAGASLLELINDVLDLSKVEADRLELEHRPFDLWALVEGAVEIFTLRTQEKGVK 263

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD-NGDFIFSV 723
           +      +     ++D++RL QI   +L NA+ F+  G     V ++   D  G   F V
Sbjct: 264 LDFELSARAPRYVISDQKRLRQILVNLLGNAVKFTQSGQIQLWVDVRDCEDAGGWLYFRV 323

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  + +   KS+F  FV        Q  G GLGL+I +  + L  G + + S     
Sbjct: 324 QDSGIGMSKAQQKSIFEPFVQADASVTRQHGGTGLGLAICKKLVELLSGDIWLESELGQG 383

Query: 782 TTINCR 787
           +  +  
Sbjct: 384 SRFHFT 389


>gi|77360565|ref|YP_340140.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875476|emb|CAI86697.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1019

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 164/391 (41%), Gaps = 30/391 (7%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK----TEENRLSPGTHIRNIA 484
            N+L +     I++  + +      G++   N   + ++     ++         +    
Sbjct: 360 INSLKEQNNTVIENSLDAIFSISESGKVVQFNNTAKQVFGDILESDNVNFISLFTLNKED 419

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--------ELLSDSVLEYSIIPLPNA 536
             C R   ++     F A+ T           TL        E    + +   I  L N 
Sbjct: 420 EKCIRETIKNGSKMPFEAMHTDSSGNIYYYSITLSSIYDVFNERYQVAAILRDISSLKNI 479

Query: 537 QTMLTFVNVT---DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           Q  L  VN T      +  R L    +    A + K+ FV ++S+E+R+P+  ++G  ++
Sbjct: 480 QAELEGVNTTLELKVSQRTRELERAIDEALAASQAKSDFVANISHEIRTPMNGVLGMLEM 539

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK      L+ +Q  Y++  ++S+  L+NL+NDILD + ++AG + ++  +  +  + ++
Sbjct: 540 LKE---DGLSEQQHHYLKLANSSANSLMNLINDILDFSKIEAGKLDIDNHSFDVVTVCSD 596

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK 711
           +  S+A +     + + + +   +    V D  RL QI   +++NA  F+ KG   + + 
Sbjct: 597 MINSLALQGQRKGLEVFLHTHNIVDRMVVGDSHRLKQILINLVNNAFKFTHKGEVSLTIG 656

Query: 712 AARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
           +           F+VK+ G  I  +    +F  F        R   G GLGLSI +    
Sbjct: 657 SKYITDTKLQMSFAVKDTGIGIAAENIDKLFEVFTQEDSSTTRHFGGTGLGLSICKKLAQ 716

Query: 767 LHGGHVSISSSDEGVTTI--NCRI---PSKE 792
           L GG++S++S     +T      +   P K+
Sbjct: 717 LMGGNISLTSEKGVGSTFTATVELHVAPQKK 747


>gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 872

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 167/396 (42%), Gaps = 34/396 (8%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGTHI 480
           ++D E +Y           ++ + G+A     G+    N  F  +    +E  LS     
Sbjct: 254 RLDSEARY-------SVVFNNAAVGLAQIAISGQFIQINQEFCKIIGYTQEEILSQNFTF 306

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLSDSVLEYSIIPLPNAQT 538
             I        +      L A    S+  E++     G L  ++ SV             
Sbjct: 307 ERITHPDDIAVDHEYIRQLLAGDRQSYMLEKRYIRRDGGLVWVNLSVYLQRDSRGDPLYL 366

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSFVQHVSYEL 580
           +   +++++  +AE  L    + L +                   +  K+ F+  +S+EL
Sbjct: 367 ISAVLDLSERKQAENELKRYKDHLEEEVQQRTADLVLARDAAEAANRAKSVFLSSMSHEL 426

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+ L+    +  L+  Q + +  I+ S   LL+L+ND+L++A ++AG +++
Sbjct: 427 RTPLNAILGFSALMSRDTM--LSHIQRENLNIINRSGEHLLSLINDVLEMAKIEAGRVQV 484

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
            +    L  L+ +V   +A +  E  +++ V          + D  RL Q+   ++ NA+
Sbjct: 485 LHEAFDLGALVRDVSDMMAVRAQEKGLQLLVDQSSDFPRYIMGDEARLRQVLINLVGNAV 544

Query: 700 DFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
            F+  G   +   +K        +  V+++G  I  +  + +F+ FV       ++G GL
Sbjct: 545 KFTQHGGITMRFGIKPNLLPERLLIEVEDSGIGIKPEDQQRIFDAFVQIGDLSAQKGTGL 604

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I   F+ L GG +++ S+       +  +P ++
Sbjct: 605 GLTITRQFVQLMGGVITLESTPGVGAVFSVELPIEK 640


>gi|163790939|ref|ZP_02185362.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7]
 gi|159873781|gb|EDP67862.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7]
          Length = 614

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 164/415 (39%), Gaps = 32/415 (7%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWM-FENLTVQVD-LETKYNTLVKVQGETID 441
           +E  + T  + +G  +  V V S    G +     +L+ +V+  +    +  +     + 
Sbjct: 212 TEMTQQTIQMADGDYSGQVKVYSKDELGILSTAINDLSTKVEEAQETTESERRRLNSVLT 271

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N     +    +  ++ G  I  +      Y           
Sbjct: 272 HMTDGVIATDRRGIIIIINDKAMEMLNISQE-MALGVSILKVLKIDKEY--------TLR 322

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            ++ + DD       T E+L     E+++I             + D  + E         
Sbjct: 323 KLLENEDDMLFDFS-TEEMLVTLRGEFTLIQRETGFISGIVCVLHDVTKQE--------- 372

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             K +  +  FV +VS+ELR+PLT++  + + L             Q++E     +  ++
Sbjct: 373 --KIENERKEFVSNVSHELRTPLTSMRSYLEALLDGAWKD-PEIAPQFLEVTQEETDRMI 429

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-----NNIRIKVISDGK 676
            ++ D+L+L+ +D+    L+   + +N+L + V +     +           IK      
Sbjct: 430 RMIKDLLELSRMDSNKSVLDLEYLNVNELFDHVIKRFEMMLQSSDKTMKEFSIKREFTKS 489

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  +++Q+   I++NA+ +S  G T+       N   IFS+ + G  IP+    
Sbjct: 490 QLWVEVDADKMIQVLDNIMNNAIKYSPDGGTITCGLVETNTSVIFSISDEGLGIPKRDLA 549

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +VF+RF        R   G GLGL+I +  +  H G +   S++   TT    +P
Sbjct: 550 NVFDRFFRVDKARARSMGGTGLGLAISKEVVQKHKGKIWAESTEGKGTTFYISLP 604



 Score = 41.1 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 90/268 (33%), Gaps = 32/268 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N   +E+  I    +A   S  ++
Sbjct: 254 EAQETTESERRRLNSVLTHMTDGVIATDRRGIIIIINDKAMEMLNISQE-MALGVSILKV 312

Query: 356 LEFLRS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           L+  +     KL E  +   +            + ++      G+   +   +    G +
Sbjct: 313 LKIDKEYTLRKLLENEDDMLF----------DFSTEEMLVTLRGEFTLIQRETGFISGIV 362

Query: 414 WMFENLTVQVDLE-----------TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
            +  ++T Q  +E            +  T +      ++ L +G      D  I    P 
Sbjct: 363 CVLHDVTKQEKIENERKEFVSNVSHELRTPLTSMRSYLEALLDGAW---KDPEIA---PQ 416

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           F  + + E +R+     I+++        N+S     +  +   FD   K  +  L+   
Sbjct: 417 FLEVTQEETDRMIRM--IKDLLELSRMDSNKSVLDLEYLNVNELFDHVIKRFEMMLQSSD 474

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
            ++ E+SI        +   V+    ++
Sbjct: 475 KTMKEFSIKREFTKSQLWVEVDADKMIQ 502


>gi|323139256|ref|ZP_08074310.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
 gi|322395477|gb|EFX98024.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
          Length = 923

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/332 (24%), Positives = 151/332 (45%), Gaps = 7/332 (2%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           F  +       ++    I     T      +  G DL A       DE   L   +  ++
Sbjct: 329 FFMIPPIIVLAMAVARTITRPIKTAVGVAEKVAGGDLDANFEIESRDETGHLLTAIRSMT 388

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             + E     L  +          +   A   L+    A  +A + K++F+ ++S+ELR+
Sbjct: 389 GELRE-----LYGSMEDKIRARTRELQMANEELSVARVAAEEASKTKSAFLANMSHELRT 443

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  IIG++++L+   L   +++  + ++ I  +   LL L+NDILDL+ ++AG M++  
Sbjct: 444 PLNAIIGYSEMLQEDALDKGDAEPLEDLKKIEGAGRHLLGLINDILDLSKIEAGKMEVFI 503

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + +  L+NEV   +     +N   ++++     GSF +D  ++ Q    ++SNA  F+
Sbjct: 504 EKVDIRPLVNEVMSIVQPLAEKNGNALELVCPDDAGSFHSDETKVKQCLLNLMSNANKFT 563

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
           SKG   ++         +F V + G  + E+    +F  F        +R  G GLGL+I
Sbjct: 564 SKGKVTLIVERDAQASVVFRVSDTGLGMTEEQLGRLFLAFTQADASTTKRFGGTGLGLAI 623

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + F N  GG +S+ S+ +  +T    +P ++
Sbjct: 624 TKHFCNALGGQISVQSAPDAGSTFTITLPDQQ 655


>gi|311232728|gb|ADP85582.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris RCH1]
          Length = 1535

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 135/647 (20%), Positives = 245/647 (37%), Gaps = 56/647 (8%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
             AE   K  +L      +  LFD++   +   D++  +   N         +     + +
Sbjct: 751  NAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGRPL 810

Query: 238  GESRKLFKEEIK-KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI--- 293
             +      E     + ++    E    ++ + L  G     +I  V +  G     +   
Sbjct: 811  QQIASCLAEPDNLFKSLALGLSEGGTHDSEARLTDGRWCQQRIHAVRDETGATEHMLLTF 870

Query: 294  -DVSK---EITVNDQLTHTYEILHNLTVAIAI-----FDQNRYLQFHNRSFVELWEIDLA 344
             D++       +  +     E+  N+   +        D N  +++     VEL  +   
Sbjct: 871  MDITHVKHAEAMRQEARSLDEVSRNVP-GVVFKLCAPHDGNIRVEYVGGGTVELCGLSQE 929

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVI 403
             +  +P           A   P+ +       +      +    +   H   G   +HV 
Sbjct: 930  EIKADP-------HALVALFGPDVVPHILAGISATDGEGTPVDVEIPLHCTGGTKWVHVQ 982

Query: 404  VTSNP--RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
             TS P   GGT W  +  + T +    T+ +         +DH    +      G     
Sbjct: 983  ATSTPARGGGTEWYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGACDWF 1042

Query: 460  NPAF-----RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            N  +     R++ +      + G H  +     S Y         F       +   K  
Sbjct: 1043 NTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFALQQAFE-----MNYRLKRH 1097

Query: 515  QGTLELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
             G    L D        PLP+     +  +    ++TD+V A  ++ E ++   +A+  K
Sbjct: 1098 DGQFRWLVD-----CGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTK 1152

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            + F+ +VS+ELR+PL   +G     +  +L SL+ +Q QYV     S   L+ L++DILD
Sbjct: 1153 SEFLANVSHELRTPLNGALGML---QLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILD 1209

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLL 688
            L+ ++AG + +      + +L++EV  + +       I ++  I+ G       D  RL 
Sbjct: 1210 LSRIEAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLR 1269

Query: 689  QIFSKILSNAMDFSSKGST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFVS 744
            Q    ++ NA+ F+ KG   V    A   GD I    +V++ G  IPED  +S+F  F  
Sbjct: 1270 QTLFNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQ 1329

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  RR  G+GLGL IV   + L GG + + S+ +  T ++  IP
Sbjct: 1330 LDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAIP 1376



 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 13/95 (13%)

Query: 143  LVAETQNDCAIKIEG--RVSGSCAFLRILSLD-----------GIYSELAETTLKCKKLS 189
            + A       + +E     +G   ++ + +             G+  +  E      ++ 
Sbjct: 954  ISATDGEGTPVDVEIPLHCTGGTKWVHVQATSTPARGGGTEWYGVAVDATERRYDATRMH 1013

Query: 190  NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            N    +  + D    L+W  D  G   W N ++  
Sbjct: 1014 NAADRYLRILDHAPMLIWRSDTTGACDWFNTTWLD 1048


>gi|229543484|ref|ZP_04432544.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
 gi|229327904|gb|EEN93579.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
          Length = 921

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 148/349 (42%), Gaps = 19/349 (5%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLE 519
           PA   L K   + L    +         R   ES    +   A       + + LQ   E
Sbjct: 409 PARLELIKQINHTLGMAINSVLSRMEVERLLKESQMMTEELQAQSEELQSQSEELQAQSE 468

Query: 520 LLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            L     E  +I      +T        +  + +  L EK E L ++ + K+ F+ ++S+
Sbjct: 469 ELQSQSEELRMINEQLEERTKEAEKRAQELEKTKHQLEEKAEQLIQSSQYKSEFLANMSH 528

Query: 579 ELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           ELR+PL +I+  +++L    + G+L  +Q ++   I +S + LLNL+NDILDL+ V+AG 
Sbjct: 529 ELRTPLNSILLLSEMLADESEEGNLTEEQKEFARVIHSSGSDLLNLINDILDLSKVEAGK 588

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696
           M++        +L   V    A    +  + +K+  D  +      D++R  QI   +LS
Sbjct: 589 MEIVIEETNTRELPVYVGNQFAYLAEQKGLELKIDVDDNVPDLIYTDQRRFQQIVKNLLS 648

Query: 697 NAMDFSSKGSTV-------------ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           NA+ F+  GS                +K    +     +V++ G  IPE     +F  F 
Sbjct: 649 NAVKFTENGSVTFRMRKVSAETAGKYVKTEGADFWLEVAVQDTGIGIPEKKQDLIFEAFQ 708

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                   +  G GLGLSI   F  L GG + + S+    +T    IPS
Sbjct: 709 QGDGATGRKYGGTGLGLSICREFARLLGGTICLDSTVGKGSTFILYIPS 757


>gi|89096799|ref|ZP_01169691.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89088814|gb|EAR67923.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 609

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 146/384 (38%), Gaps = 28/384 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-PAFRSLW 467
           G     F +LT ++ + +       +     + ++++GV      GR+ L N PA + L 
Sbjct: 240 GQLAITFNSLTKKLQEAQATTEGERRKLSSVLSYMTDGVIATDRRGRVILINEPAAKMLN 299

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              E  LS  + I N+       Y   +      ++I  +  E                 
Sbjct: 300 VPRETVLS--SPIVNLLG-LEEDYTFEELLAERESVILDYSTETTPYVLRAN-------- 348

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +S+I             + D    E           K D  +  FV +VS+ELR+PLT +
Sbjct: 349 FSVIQKETGFVNGLITVLHDITEQE-----------KIDLERREFVANVSHELRTPLTTM 397

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + + L    +   +    Q++      +  ++ +VND+L L+ +D+   ++    +  
Sbjct: 398 RSYLEALAEGAMHDEDI-APQFLNVTRTETERMIRMVNDLLQLSKLDSKDYRMKKEWVNF 456

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            D  N +         E N+  +            D  +L Q+   I+SNA+ +S +G  
Sbjct: 457 VDFFNRIIDRFDFS-KEQNVTFQRNLPEHAAFVEIDEDKLTQVVDNIISNALKYSPEGGQ 515

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           V           +  + + G  IP+D    VF RF        R   G GLGL+I +  +
Sbjct: 516 VSFNIVEQEEQLLIRISDQGVGIPKDNLDKVFERFYRVDKARTRKLGGTGLGLAIAKEVV 575

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             H G +   S++   TTI+  +P
Sbjct: 576 EAHDGKIWAESTEGKGTTISFTLP 599


>gi|116873389|ref|YP_850170.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742267|emb|CAK21391.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 594

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 169/400 (42%), Gaps = 36/400 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V   ++   G + + F ++  Q+    +      +     +  +++GV  F  D  I L
Sbjct: 221 RVPTYTHDEIGELGVAFNDMAKQLKYNISALRQEKEQLSNILVGMADGVIKFSVDKTIIL 280

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SNP                  +  I        NE+              D+++S  G +
Sbjct: 281 SNPPAEEFLHNWFFSPENSEKVL-IPVALDDLLNETL-------------DKKESQVGEI 326

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +D      +  L   + + + V V   +  E+ L          +++K+ FV +VS+
Sbjct: 327 -TFADRTYVAILTLLYTGEHVRSVVAVIRDMTEEKQL----------EKMKSDFVNNVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P++ + G+++ +      S + +  ++ + I   S  +  LVND+LDLA ++AG  
Sbjct: 376 ELRTPISMLQGYSEAIIDGVAQS-DEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFN 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            ++   + +  LL +V  +      EN + + +  +     +  D+ R+ Q+   ++ NA
Sbjct: 435 HMDNQKMPIAPLLEKVIANFDVLAKENFVELGLELETPNLEYSYDQDRMEQVLINLIMNA 494

Query: 699 MDFS-SKG--STVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           +  +  +G    VILK    +   + + +V +NGS I E+    +F RF       +R  
Sbjct: 495 IRHTGKEGYAGKVILKQTIDKTRNNLVITVSDNGSGIAEEDIPYLFERFYKADKARKRGK 554

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G G+GL+IV++ +  H G +S+ S     +     +P 
Sbjct: 555 AVGTGIGLAIVKNIVEAHNGKISVESVLGEGSDFIITLPL 594


>gi|331270613|ref|YP_004397105.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329127163|gb|AEB77108.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 710

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 158/387 (40%), Gaps = 24/387 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP---AFRSLWKTEENRLSPG 477
            +           K     I+   + + +   +G     N     F +L        +  
Sbjct: 297 EKHHTRNALIESEKRLRILINAFPDLICLKDGNGHWLEINESTIKFFNLKNVPWKNKTTQ 356

Query: 478 THI-----RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
             I     +NI     + Y   D   L    I ++ DE     G        VL+   +P
Sbjct: 357 NIINTLTHKNIYENRLKKYEHFDNIALMRKTIVNYQDEFCLANGE-----KIVLDIFKVP 411

Query: 533 LPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           + +        +    ++T  ++AE      NE L +  +++  F  ++S+EL++PL  I
Sbjct: 412 IFDCNNNLTGMVTIGHDLTAHIKAEENSKLLNEML-EYQKLRVEFFANISHELKTPLNLI 470

Query: 588 IG---FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           +    + +L+        +    +Y   I  +S  L+ +VN+I+D+  +D+G  +++   
Sbjct: 471 LSAVQYVELVNNKNFDFNSDSFCKYTNIIKQNSYRLVRIVNNIIDITKIDSGYFQIHPEN 530

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + +L+ ++    A+ +H  ++     ++ +      D   + +I   +LSNA+ F+  
Sbjct: 531 YNIVELVEDICLYCASYIHSKDLDFIFDTETEEKIISCDALIMERIILNLLSNAIKFTQP 590

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  + +     + +   SVK+ G  IPE+    +F RF+           G G+GLS+V+
Sbjct: 591 GGRITVNIYDKDNEIQISVKDTGIGIPENRQDLIFERFIQVDKSLSRNHEGSGVGLSLVK 650

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
           +F++LH G + + S     +     +P
Sbjct: 651 AFVDLHNGSIEVKSKVGHGSEFLITLP 677


>gi|326202326|ref|ZP_08192195.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987444|gb|EGD48271.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 615

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 163/380 (42%), Gaps = 24/380 (6%)

Query: 416 FENLTVQVDLETK-----YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           F N+T ++    +                +  +S+ +     + RI L N AF  ++   
Sbjct: 245 FNNMTKRLQQYEQSTMGNLLAEKNKSVAIVKCISDPLVFLDTEYRIILLNDAFEKIFNVS 304

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E  L+    +  I           + +D  +    S  +  + +        D      +
Sbjct: 305 EEVLTNKHFLEGI--------RNGEIFDFISDTFRSGSETEQKIFAVKANCEDYYFNIIV 356

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             + +    L+ +          A+ +    L++ ++I+  F+  +S+E ++PLT+I+  
Sbjct: 357 TTVKDNNANLSGII---------AVFQNVTHLKELEKIRTDFIATISHEFKTPLTSIVMG 407

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           TD+L    +G+LN  Q Q ++ I   S  L  LVND+L+L  +++G          ++D+
Sbjct: 408 TDILSDEGVGNLNDDQRQIIKAIREDSDRLTKLVNDLLELTRIESGKAIFKIKEYAIDDI 467

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +    +       + +  +    D  +   +AD +++  + + ++SNA+ +++ G  + +
Sbjct: 468 IECAVKPFYQIAEQQDKTLYFKCDEDMPRVIADFEKITWVLNNLISNALKYTNAGDEISV 527

Query: 711 KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768
            A+ D       +VK+ G  IPE+   ++F +FV       + RG GLGL++V+  I  H
Sbjct: 528 IASVDKENTMYVTVKDTGLGIPEEYIDNIFEKFVQVKDADFEVRGTGLGLAVVKEIIEAH 587

Query: 769 GGHVSISSSDEGVTTINCRI 788
            G +   S  +  ++ +  +
Sbjct: 588 HGRIWCESRLDVGSSFSFTL 607



 Score = 41.1 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +  +   +  I+  ++  +   D    +   N +F +++ +    L    +N   LE +
Sbjct: 262 NLLAEKNKSVAIVKCISDPLVFLDTEYRIILLNDAFEKIFNVSEEVL----TNKHFLEGI 317

Query: 360 RSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           R+        + +++  E    ++ + + + + ++  N     V   +    G I +F+N
Sbjct: 318 RNGEIFDFISDTFRSGSETEQKIF-AVKANCEDYYF-NIIVTTVKDNNANLSGIIAVFQN 375

Query: 419 LTVQVDLET 427
           +T   +LE 
Sbjct: 376 VTHLKELEK 384


>gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 501

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/409 (22%), Positives = 170/409 (41%), Gaps = 37/409 (9%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE--------------TIDHLSE 445
              +           + + +  +  LE +   L + Q                 I+ +++
Sbjct: 100 YDFVTKPFRVDHLTLVVKRVLEKQKLERQARELREEQARNLYTLASEQSRLHTIINCMAD 159

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV V   D  + L NPA   L +       PG          S Y +++   +    ++T
Sbjct: 160 GVLVTNRDLEVVLCNPALMRLLELSTPPPQPGP--------LSFYLDDTSLKEAIYTLLT 211

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           + + +  +          + L     P   P+ Q +       D               +
Sbjct: 212 APEQDNITYISQELRKGRAYLRALSAPFYGPDLQLLGVVTVFHDIT-----------GFK 260

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + DE+KN FVQ VS+ELR+PL+ I     ++     G L  KQ + +    A    LL+L
Sbjct: 261 ELDEMKNEFVQMVSHELRAPLSAIKMQHTVILDGLAGDLTEKQRELLVRAHAKIQGLLDL 320

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N++L++A ++AG  +L    + L  +L ++ + + TK     I +++I+   L    AD
Sbjct: 321 INELLNVARMEAGYCQLEQVPLSLGGVLTDLVELLQTKAANQKIVLQLITPPDLPLIQAD 380

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R+ + ++F  +L NA+++S  G  V + A   +      V + G  +  +    +F++F 
Sbjct: 381 RRSMEEVFMNLLCNAINYSPNGGNVKISAVSHSEYLEVLVSDTGVGLEPEEIPKIFDKFY 440

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              H   R+  G GLGL+IV++ I  H G + + S     TT    +P+
Sbjct: 441 RAKHPQTRQVIGTGLGLAIVKNLIEAHRGSIQVESQPGVGTTFRVLLPT 489



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 64/173 (36%), Gaps = 20/173 (11%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEIT-----VNDQLTHTYEILHNLTVAIAIFDQNRY 327
           ++ +  + RVL        A ++ +E       +  + +  + I++ +   + + +++  
Sbjct: 110 DHLTLVVKRVLEKQKLERQARELREEQARNLYTLASEQSRLHTIINCMADGVLVTNRDLE 169

Query: 328 LQFHNRSFVELWEIDLAFLATNP-----SNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           +   N + + L E+        P      +  L E + +    PEQ N     + +    
Sbjct: 170 VVLCNPALMRLLELSTPPPQPGPLSFYLDDTSLKEAIYTLLTAPEQDNITYISQELRKGR 229

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                    ++ P+ Q L          G + +F ++T   +L+   N  V++
Sbjct: 230 AYLRALSAPFYGPDLQLL----------GVVTVFHDITGFKELDEMKNEFVQM 272


>gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1287

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/570 (18%), Positives = 204/570 (35%), Gaps = 98/570 (17%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA---FLATNPSND 353
               V++       I  N    +   D +  +   N  FVEL          L +   + 
Sbjct: 320 AVQKVSESEETHRIIFENSPQGMFYLDASGIIVKCNDQFVELMGSTREKLIGLNSAAESP 379

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT--LHVIVTSNPRGG 411
             ++ +       EQ  ++    +I                  G+T  L +I      G 
Sbjct: 380 SPIDDIIQRAMGGEQTVFEGLYTSITG----------------GKTSYLRMICNPVNPGT 423

Query: 412 ----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF--GPDGR----IKLSNP 461
                I   E++T +  LE        +Q    +  ++ +       DG+    I+    
Sbjct: 424 SPTEVIATVEDITQRKHLEESVRLKNDLQELVTEVSTDFINATWENIDGKVNNMIRRCGQ 483

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYN------ESDGWDLFAAIITSFDDERKSLQ 515
                          G ++ N    C+          +    +   A +  F++ +    
Sbjct: 484 FLNVDRTFVFKFSEDGLYMSNTHEWCAPGIESVNAAMQDVSLEELPANLEIFNERKMLFV 543

Query: 516 GTLELLSDS----------VLEYSIIP-LPNAQTMLTFVNVTDSVRA------------- 551
             +E L +           V    ++P L N + + TF   + S +              
Sbjct: 544 PDVEQLPEGPEKQLLEAQDVKSMLVMPILRNDKILGTFGFESVSSKRLINEEHVQLLQIL 603

Query: 552 -------------ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                        ER L +  E    A + K+ F+ ++S+E+R+P+  IIG + L   S 
Sbjct: 604 GNILGDALIRNSFERDLLQAKEQAEAATQAKSEFLANMSHEIRTPMNAIIGISHLALRS- 662

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q  Y+  I  ++  LL ++NDILD + ++A  ++L +    L D+L+ +    
Sbjct: 663 --GLDRRQHSYLTRIDGAARSLLGIINDILDFSKIEANKLELEHVPFNLKDVLSRLSSIF 720

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  E  +++    D     S   D  RL Q+ + ++SNA+ F+S G  V+  +   + 
Sbjct: 721 DFQAEEKQLKLTFQLDPDTPLSLKGDSMRLSQVLTNLISNAIKFTSHGEIVVSVSPGTSN 780

Query: 718 D------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
                               +FSV+++G  + +D    +F+ F        RR  G GLG
Sbjct: 781 TAHEAIPECLPAKGYNQVCLMFSVRDSGQGMDQDQASRLFDAFFQADSSITRRFGGTGLG 840

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCR 787
           LSI +  + + GG + + S     +T +  
Sbjct: 841 LSISKQLVEMMGGSIQVQSQPGEGSTFSFT 870


>gi|229065124|ref|ZP_04200417.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
 gi|228716153|gb|EEL67872.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
          Length = 586

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 149/392 (38%), Gaps = 27/392 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 208 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 267

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 268 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 320

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            ++ +  FV +VS+E
Sbjct: 321 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IEQERREFVANVSHE 366

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 367 LRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 425

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 426 LMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNAL 484

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 485 KYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 544

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  I  HGG V   S +   TTI   +P
Sbjct: 545 LAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576


>gi|192361097|ref|YP_001983812.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190687262|gb|ACE84940.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 761

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/653 (15%), Positives = 212/653 (32%), Gaps = 63/653 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK--------KN 225
           ++        +  +L        ++    +   W  +     +  N  +         + 
Sbjct: 122 LHESNQRVKQQSIQLERERKNLDLVIRGANMGTWQWNVQTGEVILNERWASILGFTLAEL 181

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI------ 279
           +      ++  I           ++ +    A E +F ++   + H +     +      
Sbjct: 182 SPMSIQAWEHMIHPDD---LPAARQSLEQHFAEEMDFYDSKFRMCHKDGTWVWVYTRGRV 238

Query: 280 ---VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRY----LQF 330
                        G   D+++     ++L  + E L ++      A++         + +
Sbjct: 239 LSRTDQGEPLWMFGTHADITELQVYQERLQASEERLQSMIRNFPGAVYRCENNPLWTMHY 298

Query: 331 HNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            + +   L   +  +F+     +   +         PE +    ++  +    +      
Sbjct: 299 ISPAIERLSGYLPESFMGDGAISLTQITH-------PEDIARHYYRVQMAVNRREPFDVV 351

Query: 390 DTWHLPNGQTLHVIVTSNP----RGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDH 442
                 +G   +V          +G   ++     ++T   +         +        
Sbjct: 352 YRLLHRDGSWRYVQEVGTGIYDEQGQLQFLDGFIWDITQAEEARNAIQLNEQKLSSLYQL 411

Query: 443 LSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
               +A+    DG     NP F  +           ++        +    E        
Sbjct: 412 SPVAIALHRLADGAFVEGNPEFYRMLGYTAEEFPGLSYWDITPTEYAAAEMEQLESLHIT 471

Query: 502 AIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                ++     K       LL+  ++E S       Q      ++T+  R E       
Sbjct: 472 GRYGPYEKHYLHKDGHQIPVLLNGVLIENSH---REKQIWSIIQDITERKRIE------- 521

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                  ++KN FV  VS+ELR+PLT+I G   L+    LG +  +    +     ++  
Sbjct: 522 -------QMKNEFVSAVSHELRTPLTSISGSLGLILNGMLGEVPVRARDMLVIAHKNALR 574

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+ND+LD+  + AG +        +  ++ +  +S+        + +   +     S
Sbjct: 575 LAHLINDLLDMEKLAAGKLDFYMQPQAVLPIVEQSIESMRGYAENYGVSLVFDAVAGDAS 634

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D QRL Q+ +  LSNA+ FS +GS VIL+      +   +V + G  I ++    +F
Sbjct: 635 VNIDAQRLQQVLTNFLSNAVKFSPEGSRVILRMRVQGRELCLAVTDQGPGISDEFRTRIF 694

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F         QR G GLGL+I +  +   GG++   S      T     P 
Sbjct: 695 QKFSQADASSSRQRGGTGLGLAISKELVERMGGNIGFDSIPGEGATFYACFPL 747


>gi|94970016|ref|YP_592064.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552066|gb|ABF41990.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 585

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 155/396 (39%), Gaps = 34/396 (8%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE--TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            +   S    G +    + T +   E   +  +  +     ++ + E V     DGR+  
Sbjct: 205 RIAEDSTDEIGKVATALDKTARQLQEVFAQVESSRQELEALLNSMQEAVIAVSNDGRLMW 264

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +N     +  T                   +        +    +  + +  R +     
Sbjct: 265 ANQRMERMLPTG-------------IRRNGKIIETVRDPEFLRGVQEALESRRVTSTRVS 311

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            LL       +  P+P    +    ++T++ R E+               +  F+ +VS+
Sbjct: 312 TLLPGRTFTATTAPMPGGGAVAVLHDLTETERVEK--------------TRRDFIANVSH 357

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT+I G+ + L  S+    +    ++VE I  ++  +  L  D+L LA V++G  
Sbjct: 358 ELRTPLTSIQGYAETL--SEAFREDDPAREFVEIIRRNAQRMYRLTEDLLTLARVESGEQ 415

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           ++ +  +   +LL E + +         I + V++  + G    DR  L Q+FS +L NA
Sbjct: 416 RMEFHAVTPGELLAEAELNFQDHHRGAGIELSVMNTAQ-GEVEVDRDALRQVFSNLLDNA 474

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + +   G  ++L +       +F +++ G  IP +    +F RF         Q  G GL
Sbjct: 475 VKYGGTGGKILLGSRDVEDRVLFYIRDFGPGIPSEHLARLFERFYRVDKARSVQSGGTGL 534

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I +  +  HGG +   S        +  +P K+
Sbjct: 535 GLAIAKHIVRAHGGEIRAESELNHGAVFSFILPRKQ 570



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 54/421 (12%), Positives = 116/421 (27%), Gaps = 53/421 (12%)

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
           LR++ Q F L  + + +  +    RV    A  R   +      LA++      + NH +
Sbjct: 44  LREKVQLFALRVQAERNADLPSIARVVSKAANARATVITSDGLVLADSDANPADMENHAT 103

Query: 194 V--FKVLFDSLDFLVWHRDQAGDILWANISY---------KKNTETEGIVFQKAIGESRK 242
              F             R     I +   +                   +  +       
Sbjct: 104 RPEFVAALHGNIGTNTRRSHTLGINFLYTAAPIPGGAVRLAYPLSALDAITGQVRHTLLL 163

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLE-------HGNNKSYKIVRVLNSFGEAGIAIDV 295
                    ++ +S   +N    +  +         G+  +       +  G+   A+D 
Sbjct: 164 SSLLAAALALLLASFATQNISRRLKAIVYFADRIAAGDLSARIAEDSTDEIGKVATALDK 223

Query: 296 SKE------ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +          V         +L+++  A+     +  L + N+    +  +        
Sbjct: 224 TARQLQEVFAQVESSRQELEALLNSMQEAVIAVSNDGRLMWANQRMERM--LPTG----- 276

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQTLHVIVTSNP 408
                    +R   K+ E +    +   +    +S   T      L  G+T        P
Sbjct: 277 ---------IRRNGKIIETVRDPEFLRGVQEALESRRVTSTRVSTLLPGRTFTATTAPMP 327

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            GG + +  +LT    +E      +      +        +    G  +  + AFR    
Sbjct: 328 GGGAVAVLHDLTETERVEKTRRDFIANVSHELRT-----PLTSIQGYAETLSEAFREDDP 382

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E        +  I     R Y  ++     A + +             ELL+++ L +
Sbjct: 383 AREF-------VEIIRRNAQRMYRLTEDLLTLARVESGEQRMEFHAVTPGELLAEAELNF 435

Query: 529 S 529
            
Sbjct: 436 Q 436


>gi|172035081|ref|YP_001801582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171696535|gb|ACB49516.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 453

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 124/239 (51%), Gaps = 3/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +  +N+ L+ +   K+ +  HVS+ELR+PL  I+GF+ +L+    G+LN KQ QYV  I 
Sbjct: 198 IELENKKLKLSSHNKSDYFSHVSHELRTPLAGILGFSKMLREEIYGTLNEKQKQYVNGIR 257

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL LVND LDL+ ++A   +L   T+ + D+       +  K +E N+ + +   
Sbjct: 258 VSGEHLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISIVQPKANEQNLDLILNLS 317

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            ++     D++++ QI   +LSNA+ F+ KGS V L+  +      F V + G  I E+ 
Sbjct: 318 EQVDFCTVDQRKIKQILINLLSNAIKFTEKGS-VTLQVKKIESLLTFCVIDTGIGIKEED 376

Query: 735 CKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + +F  F         + +G GLGL++      LH G+++++S     +     +P +
Sbjct: 377 QQKLFQPFQQIHSNLNRKHKGTGLGLALSRKLAQLHQGNLTLTSEYGKGSCFTLELPLE 435


>gi|21242798|ref|NP_642380.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108282|gb|AAM36916.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1127

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 143/901 (15%), Positives = 287/901 (31%), Gaps = 136/901 (15%)

Query: 4   GMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK------VNE 57
           G         +++ +     +   G   G L   +      + ++     +      + +
Sbjct: 94  GDGEPAATIALDLASWSCSPVLQTGEQLGALYIGVAVSTADVDEQRRSDGRDSFLLMLED 153

Query: 58  TYSFLSEICDQLSKYHSLLTENNCL------TIVWDGKD---------ETPEIIGQLHQR 102
               +S+    +     LL E+          +  DG           + P + G     
Sbjct: 154 ALQHVSDPRQIIDTSVRLLGEHLQANRCAFGLVAADGSTMHVISDHVQDMPSLQGDFPLE 213

Query: 103 IDIPQTDTDLLSFENWLKFHH--YIKLSKATEKLRKEGQSFDLVAET-QNDCAIKIEGRV 159
                 D  LL    W               E+ R+ G    L     ++D  +   G  
Sbjct: 214 AARGLRDA-LLENRPWFTTDALAPGAPDYVAEQYRRSGLRASLAIPLHKHDRLVAAIGVH 272

Query: 160 SGS-----CAFLRILSLDGIYS-ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
             +      A + ++ L      E  +     ++L+ + +  + L ++L  +++  D  G
Sbjct: 273 QRAPRRWLSAEIELVRLVVARCWESMQRAKAQQQLAANEARLRRLANTLPQIIFIADPDG 332

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS---TLE 270
              + N  + + T  +    + A                  S AL+      V       
Sbjct: 333 RPHYFNQRWYEYTGLDPSNNEDAAWHRAHTADGLRLSEHAWSLALKGQRALEVECELLRH 392

Query: 271 HGNNKSYKIVR--VLNSFGEA----GIAIDVSKEITVNDQLT----HTYEILHNLTVAIA 320
            G ++ + +    V    G      G   D+        QL         +   +   I 
Sbjct: 393 DGQSRWHLVRALPVRGDDGSISEWIGTYTDIHDRRAFEQQLRESEVRFRALCETVPAMIW 452

Query: 321 IFDQNRYLQFHNRSFVELWE------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           + D      + N  +           +D  +      +D      R  +   + L  +  
Sbjct: 453 MADAQGDCVYWNPRWYNFTGQGEDQALDQGWWDVMHPDDA----ARVRHAFEQALEQRGE 508

Query: 375 KENIFSVYKSSETHKDTWHL--------PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
               + V +    ++  W +         +G+ L          G I    +++ +  +E
Sbjct: 509 FLAEYRVRRHDGQYR--WCIDTASPHFASDGRFL----------GHIGSLTDISERKHIE 556

Query: 427 TKYNTLVKVQGETIDHLS-----EGVAV-FGPDGRIKL-----------------SNPAF 463
               +   +              + +A+     G I L                 S P F
Sbjct: 557 DATASDRAILSLITTGAPLPVVLDAIALSVEARGEIPLYCSVMVRDEVRHTLSFGSAPHF 616

Query: 464 RSLWKTEENRLSPGTH---------------IRNIAATCS--RYYNESDGWDLFAAIITS 506
              ++        G                   +I A  S   ++  S    + A  +T 
Sbjct: 617 PIEYRGHFEPSPIGPEGPPCALSAHLGRQVICSDIQADASFSAHHAISAAMGIAACCVTP 676

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER------------A 554
                  + GTL +  D       +P    Q M    +    +  ER            A
Sbjct: 677 ILASNGQVLGTLNIYYDRP----HLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQA 732

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            T        A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N    + +  I 
Sbjct: 733 ETAARAQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPAN--LGRGLVIIE 790

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+     +++D+LD++ + +G ++L      +  L+  V + +        I +++ + 
Sbjct: 791 RSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPAALTRKIALELDAP 850

Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                 F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++ G  I  D
Sbjct: 851 CDGELWFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVTMDVEDERLRLCVQDTGIGIAAD 910

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
               VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ +         +P 
Sbjct: 911 FLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLPF 970

Query: 791 K 791
           +
Sbjct: 971 Q 971


>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 684

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 141/340 (41%), Gaps = 35/340 (10%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L       +    C R   +    ++    +++ D+    +   ++      ++Y   P 
Sbjct: 60  LDIKMPEMDGYEVCQRLKADEKTAEIPVIFLSALDE----VWDKVKAFEVGGVDYITKPF 115

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTN 586
              + +            ++ L  +N  L +A E        K+ F+  +S+E+R+PL  
Sbjct: 116 QLEEVIARVKTQLTLRHIQQQLQAQNATLAEAKEAAEAANRAKSEFLATMSHEIRTPLNA 175

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +IG T +L+ +K   L++ Q   VE I  S   LL  +ND+LD A +++G ++L +    
Sbjct: 176 VIGLTGILENTK---LDAHQQDLVETIRQSGETLLITINDVLDFAKIESGKLELEFKPFN 232

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
           L D L       A K  +  + +    D ++  + V D  RL QI   +LSNA+ F+  G
Sbjct: 233 LRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTRLRQILINLLSNAIKFTDVG 292

Query: 706 STVILKAARDNGDF-----------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             V +    ++                    +FSVK+ G  IP+D    +F RF      
Sbjct: 293 E-VSVSVKVEHCYVTNSTQNQDSHTSPTVCILFSVKDTGIGIPKDRFNRLFQRFSQLDSS 351

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             R   G GLGL I +    + GG + + S+    +T + 
Sbjct: 352 TTRQYGGTGLGLIISKQLSEMMGGEIWVDSTLGEGSTFSF 391


>gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1431

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/583 (19%), Positives = 210/583 (36%), Gaps = 84/583 (14%)

Query: 279  IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNR 333
            + RV  +   A +  D  ++     Q   T +     IL ++     + D++    + N 
Sbjct: 716  LARVEATLKLAQLRRDAMEQQQTLRQEAETAKQNVETILSSINDGFYVLDRDWRFTYVND 775

Query: 334  SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
               ++  ++   +  +   D   + +       +    + + E     ++      + W+
Sbjct: 776  RLCKIISMEREDILNHSIWDLFADTI---GTDIDLQFQRAFNEQTSVQFEYLYVTWNRWY 832

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVD----------LETKYNTLVKVQGETIDHL 443
                      V  +P G T++   ++T +            LE  Y   ++        +
Sbjct: 833  -------EHRVYPSPDGLTVFAA-DITERKQAELEREQLLALERHYINQLQGLTRAALAI 884

Query: 444  SEGV-------AVFGPDGRIKLSNPAFRSLWKTEEN------------------------ 472
            +  +        +      I  S+ +  S+   +                          
Sbjct: 885  NSALSVEQVLQVITDQAASIIGSHQSVTSMTIGQNWSQAISAIFLSDKYTQWQNYDVKPD 944

Query: 473  ---RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL--- 526
                     H+                W  F     +    R  L   L   +   +   
Sbjct: 945  RSGIYGCVGHLNRPMRMTQAELEAHPQWRGFGKEAKNHPPLRGWLAAPLVGRNGQNIGLI 1004

Query: 527  --------EYSI----IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA----DEIKN 570
                    E++     + +  AQ     V       AE+      EA R+     + IK+
Sbjct: 1005 QLSDKYDGEFTAADEAVLVQLAQMASVSVENVRLYEAEKQARSAAEASREEAEAANRIKD 1064

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+  +S+ELRSPL  I+G++ LL+  KL    +KQ+  V  I  ++ + + L+ D+LD+
Sbjct: 1065 EFLAVLSHELRSPLNPILGWSRLLQNGKLDEAKAKQA--VNIIERNAKLQVELIEDLLDI 1122

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
            + +  G + L  S I L  ++    +++      N+IRI+V  DG++G    D  RL Q+
Sbjct: 1123 SRILQGKLSLTSSPINLASVIKGAIETVRLAAEANSIRIEVNLDGEIGLVSGDSTRLQQV 1182

Query: 691  FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
               +LSNA+ F+  G  V ++  +       SV + G  I  D    VF+ F        
Sbjct: 1183 MWNLLSNAVKFTPTGGLVEIRLEQVGNQAQISVSDTGKGISPDFIPYVFDYFRQADSATT 1242

Query: 751  R--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
            R   G+GLGL+IV   + LHGG +   S  EG   T   ++P 
Sbjct: 1243 RKFGGLGLGLAIVRHLVELHGGTIHAESQGEGMGATFTLKLPL 1285



 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 5/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A     ++ E L + D  K +F  +VS+E R+PLT ++   + L T+    L+ +Q Q 
Sbjct: 312 QAYEEERKRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLSPLEELLTA--DDLSQEQRQE 369

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +   LL LVN +LD + ++AG ++  Y    L+    E+     + + +  ++ 
Sbjct: 370 MTLIHRNGLRLLKLVNTLLDFSRIEAGRVQAVYEPTDLSTFTAELASIFRSAIEQAGLQF 429

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V  +        DRQ   +I   +LSNA  F+  G+ + L   +       +V + G  
Sbjct: 430 SVTCEPLPELVYVDRQMWEKIILNLLSNAFKFTFSGA-IALTLRQVQHQVEITVTDTGIG 488

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP+     +F RF  V  A    + G G+GL++V+  + LHGG V + S +   TT    
Sbjct: 489 IPQAELPHLFERFHRVEGARGRTQEGSGIGLALVQELVRLHGGQVQVDSLEGLGTTFTIT 548

Query: 788 IP 789
           +P
Sbjct: 549 VP 550


>gi|312793663|ref|YP_004026586.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180803|gb|ADQ40973.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 575

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 162/371 (43%), Gaps = 34/371 (9%)

Query: 425 LETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE K N    L K     +D L  G+  F  + RI + N    ++    E  L  G  + 
Sbjct: 224 LEEKINESNVLRKRLTSLLDSLDIGIIFFDVNKRILMFNRGAENIL---ETNLKVGFSLL 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTML 540
                C+R Y      +LF  +     +E++             LE SI       +   
Sbjct: 281 E----CARVY------ELFEFLFQQDINEKE-------------LEVSINNKTKFLKVSK 317

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++  D+      +      L+K + I++ FV +VS+EL++PLT+I GF + LK   + 
Sbjct: 318 KRISYEDNKEGVLFILSDITFLKKLERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID 377

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +   ++++  I      L+ L+ND+L L+ ++   M +    +V+ +++ E  + +  
Sbjct: 378 DKDV-ATKFLNIIEVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKI 436

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K  + NI++ V     L   +  R  L QIF  ++ NA+ ++ +   V +   + +    
Sbjct: 437 KAEKKNIQLDVKVQEGLEMNIY-RDWLKQIFINLIDNAIVYNKENGKVWVTVEKSDSTVT 495

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             VK+ G  IPE   + +F RF        R   G GLGLSIV+  + L+GG V + S +
Sbjct: 496 IKVKDTGIGIPEKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQE 555

Query: 779 EGVTTINCRIP 789
              +     IP
Sbjct: 556 GIGSEFTVTIP 566


>gi|260777312|ref|ZP_05886206.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606978|gb|EEX33252.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 882

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 9/246 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER L    E    A++ K+ F+ ++S+E+R+PL  I+G T++L  S+   LNS Q   + 
Sbjct: 371 ERDLVVAKENAEAANQAKSVFLANMSHEIRTPLNGIMGMTEILSDSR---LNSSQKDILS 427

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SS  LL L+NDILDL+ +++G + L+ S   + + + E    ++TK  +  + ++ 
Sbjct: 428 DIDVSSHALLVLINDILDLSKIESGNLTLSPSHADVREAVFEAMNMVSTKALKQQVELRA 487

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF--SVKNNG 727
                +  S   D  R  QI   +LSNA+ F+  GS  V++K   +        SV + G
Sbjct: 488 TLSPDIPDSLYIDEFRFKQILMNLLSNAVKFTQDGSVSVVVKLMNEGEKAYLHCSVVDTG 547

Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  + +F  F         +  G GLGL+I      L GG ++ SS+    +  +
Sbjct: 548 VGINEEKLEEIFEPFTQEDGSITRRYGGTGLGLAICRQIAELMGGSITASSTPGLGSRFS 607

Query: 786 CRIPSK 791
             IP++
Sbjct: 608 FVIPAQ 613


>gi|120553043|ref|YP_957394.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120322892|gb|ABM17207.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 1182

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 153/382 (40%), Gaps = 30/382 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +    ++      D+  EGV    P+ R   +NPA   L     +        R + A 
Sbjct: 416 QRALANLRRYQSLFDNAIEGVFQMSPERRFVTANPAMAELLGYSSS--------RELLAR 467

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-----SDSVLEYSIIPLPNAQTMLT 541
                      +    ++    + R +++G           +     S+  + +A+ +  
Sbjct: 468 NPDVLETCIADERLRRLVVEQLEARGTVKGIEARYLTRQGEERWATISLHTVYDAEGLPM 527

Query: 542 FVN--VTDSVRAERALTEKNEA---------LRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            +     D+  + + L  + E           R + + K+ F+ ++S+E+R+PL  IIG+
Sbjct: 528 HLEGTCIDATESHQRLQIEREREQERLEKELARNSAQAKSQFLANMSHEIRTPLAAIIGY 587

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + L    L    +++    E +  S   LL LVNDILD + +DA  + ++   + L +L
Sbjct: 588 GETLLDPDLN--ETEKRSSAETVVRSGRHLLELVNDILDHSKIDANKLDVDVVPVNLPEL 645

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-V 708
           L+E++   A +  E  +   +I D  L      D  R  QI   +  NA+ F+  GS  +
Sbjct: 646 LDEIRAFFAPRAREKGLDFSIICDYPLPEKIRTDPTRYRQIIINLCGNALKFTENGSISL 705

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
           I++  R        V + G  +  +    +F+ F   +     Q  G GLGLSI      
Sbjct: 706 IIRCDRGAEKLYARVVDTGIGMKPEQLDRLFDPFAQGSTAISRQYGGTGLGLSISRRLAE 765

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L GG + +SS+    +     I
Sbjct: 766 LLGGDIRVSSTYGEGSEFEVCI 787


>gi|229020690|ref|ZP_04177418.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
 gi|229026905|ref|ZP_04183229.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228734408|gb|EEL85078.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228740605|gb|EEL90875.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
          Length = 586

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 149/392 (38%), Gaps = 27/392 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 208 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 267

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 268 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 320

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            ++ +  FV +VS+E
Sbjct: 321 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IEQERREFVANVSHE 366

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 367 LRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 425

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     +      D  ++ Q+   I+SNA+
Sbjct: 426 LMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKRSRFIDMDTDKITQVLYNIISNAL 484

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 485 KYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 544

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 576


>gi|46578865|ref|YP_009673.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448277|gb|AAS94932.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough]
          Length = 1513

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 135/647 (20%), Positives = 245/647 (37%), Gaps = 56/647 (8%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
             AE   K  +L      +  LFD++   +   D++  +   N         +     + +
Sbjct: 729  NAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGRPL 788

Query: 238  GESRKLFKEEIK-KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI--- 293
             +      E     + ++    E    ++ + L  G     +I  V +  G     +   
Sbjct: 789  QQIASCLAEPDNLFKSLALGLSEGGTHDSEARLTDGRWCQQRIHAVRDETGATEHMLLTF 848

Query: 294  -DVSK---EITVNDQLTHTYEILHNLTVAIAI-----FDQNRYLQFHNRSFVELWEIDLA 344
             D++       +  +     E+  N+   +        D N  +++     VEL  +   
Sbjct: 849  MDITHVKHAEAMRQEARSLDEVSRNVP-GVVFKLCAPHDGNIRVEYVGGGTVELCGLSQE 907

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVI 403
             +  +P           A   P+ +       +      +    +   H   G   +HV 
Sbjct: 908  EIKADP-------HALVALFGPDVVPHILAGISATDGEGTPVDVEIPLHCTGGTKWVHVQ 960

Query: 404  VTSNP--RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
             TS P   GGT W  +  + T +    T+ +         +DH    +      G     
Sbjct: 961  ATSTPARGGGTEWYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGACDWF 1020

Query: 460  NPAF-----RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            N  +     R++ +      + G H  +     S Y         F       +   K  
Sbjct: 1021 NTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFALQQAFE-----MNYRLKRH 1075

Query: 515  QGTLELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
             G    L D        PLP+     +  +    ++TD+V A  ++ E ++   +A+  K
Sbjct: 1076 DGQFRWLVD-----CGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTK 1130

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            + F+ +VS+ELR+PL   +G     +  +L SL+ +Q QYV     S   L+ L++DILD
Sbjct: 1131 SEFLANVSHELRTPLNGALGML---QLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILD 1187

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLL 688
            L+ ++AG + +      + +L++EV  + +       I ++  I+ G       D  RL 
Sbjct: 1188 LSRIEAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLR 1247

Query: 689  QIFSKILSNAMDFSSKGST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFVS 744
            Q    ++ NA+ F+ KG   V    A   GD I    +V++ G  IPED  +S+F  F  
Sbjct: 1248 QTLFNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQ 1307

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  RR  G+GLGL IV   + L GG + + S+ +  T ++  IP
Sbjct: 1308 LDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAIP 1354



 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 13/95 (13%)

Query: 143  LVAETQNDCAIKIEG--RVSGSCAFLRILSLD-----------GIYSELAETTLKCKKLS 189
            + A       + +E     +G   ++ + +             G+  +  E      ++ 
Sbjct: 932  ISATDGEGTPVDVEIPLHCTGGTKWVHVQATSTPARGGGTEWYGVAVDATERRYDATRMH 991

Query: 190  NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            N    +  + D    L+W  D  G   W N ++  
Sbjct: 992  NAADRYLRILDHAPMLIWRSDTTGACDWFNTTWLD 1026


>gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
 gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
          Length = 796

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 151/349 (43%), Gaps = 34/349 (9%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            V++ G  G   L+    + L +   + +     ++       R   E    D    +  
Sbjct: 168 AVSLVGMAGAFILARLTAQGLIQPIHSLIMTMQQVQR--DRNYRLRVEGLSNDESGQLAA 225

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           +F+D    +Q   E L  +V E +                         L E       A
Sbjct: 226 AFNDMLDEIQRRDENLEKTVEERTA-----------------------DLEEAVTKAEAA 262

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K++F+ ++S+E+R+P+  ++G  +LL +++   L++ Q + +  I +S T L+ ++N
Sbjct: 263 SLAKSAFLANMSHEIRTPMNGVLGMAELLMSTE---LDTYQRELIGTIMSSGTSLVTIIN 319

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           DILD + ++AG   LN     L + +  V   +A +  E ++ + V  D  L      D 
Sbjct: 320 DILDFSKIEAGKFSLNEEPFNLREGIENVATLMAGRAAEKDLELFVRYDPSLPEGVFTDG 379

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNR 741
            RL Q+ + ++ NA+ F+ +G   + +  A+     D   SV + G  IP +  +++F +
Sbjct: 380 GRLRQVITNLVGNAIKFTDEGQVLIDVTGAQSGETVDLRISVTDTGIGIPPEKLEAIFEK 439

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F    +   R   G GLGL+I ++ I L GG + ++S      T    I
Sbjct: 440 FEQADNTSSRMYEGTGLGLAICKTIIELMGGKIGVTSELGRGATFFIDI 488


>gi|153011989|ref|YP_001373201.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
 gi|151563877|gb|ABS17372.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
          Length = 1141

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 128/261 (49%), Gaps = 3/261 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q     +  +D  RA  ++  K   L ++ + K+ F+ ++S+ELR+PL + +    LL
Sbjct: 441 EEQANQLEIQRSDLERANASVQLKAAELERSSQYKSDFLANMSHELRTPLNSSLILAKLL 500

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +   +L  +Q +Y   I +S   LLNL+NDILDL+ ++AG +++      +  L N +
Sbjct: 501 ADNPHENLTDEQVKYARTIQSSGNDLLNLINDILDLSKIEAGHVEIQPEEASVVRLTNGL 560

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +Q       E  +   +  D  L  +F  D +RL QI   ++SNA+ F+ KG   +    
Sbjct: 561 RQMFEPVASEKQLEFIISLDEHLPKTFETDPRRLEQILKNLISNAIKFTEKGKVELSVRP 620

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           + +   +FSV ++G  I ED   S+F  F        RR  G GLGLSI    + L  G 
Sbjct: 621 QGSDKIVFSVADSGIGIAEDQLNSIFEAFHQADSTISRRFGGTGLGLSISRQLVRLLAGT 680

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +++ S     +  +  +P ++
Sbjct: 681 IAVESKPGQGSRFSVTLPLRQ 701


>gi|258424108|ref|ZP_05686990.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9635]
 gi|257845729|gb|EEV69761.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9635]
          Length = 554

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKMQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNITHNIEQI 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549


>gi|146297038|ref|YP_001180809.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410614|gb|ABP67618.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 152/369 (41%), Gaps = 32/369 (8%)

Query: 425 LETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE K N    L       ++ +  G+  F    RI + N     ++ T+    +      
Sbjct: 224 LEEKINEVNILNYRLSALLNSIELGIIFFDNKKRILMFNQQAEEIFATKLKNGTSLLECI 283

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I       Y+E+     F   I                  + +L+ +   +        
Sbjct: 284 RIYELFEFLYDENVFEKEFEITING---------------QNKILKVTKKRVK------- 321

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +       +      ++K ++I++ FV +VS+EL++PLT+I GF + LK   +  
Sbjct: 322 ---YDEDKEGMLLVVSDITFIKKLEKIRSDFVANVSHELKTPLTSIKGFVETLKDGAIED 378

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 +++  I      L+ L+ND+L L+ ++   +++    + + ++L E  + +  K
Sbjct: 379 -KEIAGKFLNIIEVEVERLVRLINDLLYLSEIENAKIQVTEDDVNVKEVLEECIELLRFK 437

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               NI++++  D KL      +  L QIF  ++ NA+ ++ +   VI++  R +     
Sbjct: 438 AESKNIKMQLRLDDKL-KMKIHKDWLKQIFINLIDNAIVYNRENGEVIIEVERLDEKIAI 496

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            VK+ G  IP++  + +F RF        R   G GLGLSIV+  + L+ G + + S   
Sbjct: 497 RVKDTGIGIPQNEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYNGKIYVQSEVG 556

Query: 780 GVTTINCRI 788
             +     I
Sbjct: 557 KGSEFTIVI 565


>gi|220919355|ref|YP_002494659.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219957209|gb|ACL67593.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1847

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 124/260 (47%), Gaps = 3/260 (1%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            N +  L     ++   A R+L EK E L+     K+ F+ ++S+ELR+PL +++  + +L
Sbjct: 1420 NEKARLLEQKNSEVELASRSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKML 1479

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              ++ G+L  +Q ++   +  S   LL L+N+ILDL+ ++AG M +      L  + +++
Sbjct: 1480 AENRDGNLTPEQVKFASTVYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLEAVRDDL 1539

Query: 655  KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +Q+         +  +V     L      D  RLLQI   ++SNA  F+ +G  V+    
Sbjct: 1540 EQTFRHVAEHKGLGFQVRMGPDLPERIHTDPTRLLQILKNLISNAFKFTERGEVVLDVGP 1599

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
               G   F+V++ G  I  D  K +F  F         +  G GLGL+I      L GG 
Sbjct: 1600 AAGGALAFAVRDTGIGIAADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGS 1659

Query: 772  VSISSSDEGVTTINCRIPSK 791
            + + S+    +     +P++
Sbjct: 1660 IEVESAPGRGSVFTLVLPAR 1679


>gi|91772550|ref|YP_565242.1| Cache sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711565|gb|ABE51492.1| HATPase domain-containing external sensor signal transduction
           histidine kinase [Methanococcoides burtonii DSM 6242]
          Length = 633

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 151/320 (47%), Gaps = 7/320 (2%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS-LQGTLELLSDSVLEYSIIP 532
           L   + I  I    + Y            II++F+D  KS L+G L   +++ +      
Sbjct: 310 LILISSIALIFMAGAAYLVAISITRPINEIISNFEDISKSALKGDLNRRAEADVGVDFRK 369

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +P+    +       S   E+A    N+ L+  D++K+ F+ +VS+ELR+PLT+I G+T 
Sbjct: 370 IPSGLNDILDSLQIYSNDLEKA----NKELKSLDQMKDVFLSNVSHELRTPLTSIKGYTQ 425

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L    LG +N  Q   +E +  ++  L  LV+ +L ++   A I++ ++    +  +++
Sbjct: 426 NLYDESLGDINGSQKTSLETVLRNADRLRRLVDSLLYISQAQAEIIEYDFKECYIAKIIS 485

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                    + EN++ I+      L +  AD  RL+ + + I+ NA+ F+  G  +IL  
Sbjct: 486 NTIMDTIMLVEENDLHIEKKIPSDLPTIEADEARLVDMLNNIVDNAIKFTPPGGMIILGV 545

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
             D      +V + G  IP+++  ++F +F         +  G GLGL I +  ++ H G
Sbjct: 546 FDDENYLHLTVSDTGIGIPKELIPNLFKKFYQIDSSIRRKYGGTGLGLYICKKIVDAHSG 605

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + I S     TT++ R+P 
Sbjct: 606 EIWIESEPHKGTTVHIRLPK 625


>gi|188589597|ref|YP_001920541.1| sensory histidine kinase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499878|gb|ACD53014.1| sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43]
          Length = 555

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/402 (20%), Positives = 168/402 (41%), Gaps = 35/402 (8%)

Query: 391 TWHLPNGQ-TLHVIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKVQ-GETIDHLSEGV 447
           T  + NG   +   + S    G + + F N+  Q+ ++       + +    +  +  GV
Sbjct: 182 THKMANGDYRIRAKINSRDELGNLGISFNNMADQLQMKMNEIFDKQTRIESILRSMESGV 241

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-TCSRYYNESDGWDLFAAIITS 506
                +  +   NP    ++  ++N L     I  I+    + +  E    D    I+  
Sbjct: 242 IAVDNNNVVISINPYAERIFGIKKNILGESI-IEYISDYDINTFLEEDYEIDKEIKILHP 300

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            + E K  +  +           I  +     ++T  ++TD  + E              
Sbjct: 301 IERELKIKKSNI-----------INGIEMIGKVITIQDITDIKKLEL------------- 336

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            ++  FV +VS+EL++PLT+I GF + L+       N  + +++  I   S  L  L+ND
Sbjct: 337 -MRTQFVANVSHELKTPLTSIKGFAETLR---YVEDNETREKFLNIIDKESERLSRLIND 392

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           IL L+++++ I   N    +   ++ +V   +    +  +I ++   D      + D+ +
Sbjct: 393 ILVLSSIESNISTPNDE-FLPKVIIEDVINMVRKLANNKDINLEF-YDDNQELILGDKDK 450

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
             Q+   ++ NA+ +S  GS V + +    G +   + +NG  IP++    VF RF    
Sbjct: 451 FYQLTLNLVENAIKYSENGSKVKVVSYSKQGYYYLEISDNGIGIPKEDLPRVFERFYRVD 510

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              ++ G GLGL+IV+  +    G +++ S+    +T   RI
Sbjct: 511 KSRKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRI 552


>gi|119356709|ref|YP_911353.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354058|gb|ABL64929.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 590

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 154/384 (40%), Gaps = 28/384 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G     F  ++ +++   +     +     +  + E + V   DG I L NPA   +++ 
Sbjct: 227 GKMARAFNFMSAEINTMQRK---EEWYRAVLSGIREAIIVTNADGEIILVNPAASRMFRI 283

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +   L              +   +    +LF+ + T     +K     + +     ++ S
Sbjct: 284 DGAMLKSHP---------VKQLADQKLRELFSDVHTKRTTLQKEEVSLVTVKGKRTMQIS 334

Query: 530 IIPLP-NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +P+  + Q   T   + D  +           LR  + I+  FV  VS+ELR+PLT+I 
Sbjct: 335 SMPVKRDGQFDGTVFVLNDITK-----------LRNLERIRRDFVSSVSHELRTPLTSIK 383

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+T+ L    +       + ++  I   S  L  LVND+LDL+ +++G +   ++   L 
Sbjct: 384 GYTETLLDGAMHD-PEHAAAFLRIILQESEQLTALVNDVLDLSRIESGKIDYRFAPTDLR 442

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-ST 707
            +L +  + +   + +  I++ +    +L    AD   L      +L NA+ +       
Sbjct: 443 SILQKSSELVLPAIEKKKIKLDMQFQEELPLVYADAAYLEIAVRNLLDNAVKYVEDTVGR 502

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + + A +   + I  V +NG  I       +F RF         Q  G GLGL+IV+  +
Sbjct: 503 IRVTAYKSESNVILEVHDNGLGIHPSDLDRIFERFYRADKARSRQSGGTGLGLAIVKHIV 562

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             H G + + S     +     +P
Sbjct: 563 LAHKGTIEVHSRLNQGSVFRMSLP 586



 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++  T+  +      +L  +  AI + + +  +   N +   ++ ID A L ++P     
Sbjct: 238 AEINTMQRKEEWYRAVLSGIREAIIVTNADGEIILVNPAASRMFRIDGAMLKSHPVKQLA 297

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            + LR              KE +  V    +       +P  +            GT+++
Sbjct: 298 DQKLRELFSDVHTKRTTLQKEEVSLVTVKGKRTMQISSMPVKRDGQF-------DGTVFV 350

Query: 416 FENLTVQVDLETKYN 430
             ++T   +LE    
Sbjct: 351 LNDITKLRNLERIRR 365



 Score = 42.2 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 55/166 (33%), Gaps = 8/166 (4%)

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           + G  SG+ A  R   +  +       + +   +      ++ +   +   +   +  G+
Sbjct: 210 VHGDYSGTIAVNRDDEIGKMARAFNFMSAEINTMQRKEEWYRAVLSGIREAIIVTNADGE 269

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-ETVSTLEHGN 273
           I+  N +  +    +G + +      ++L  +++++              E VS +    
Sbjct: 270 IILVNPAASRMFRIDGAMLKS--HPVKQLADQKLRELFSDVHTKRTTLQKEEVSLVTVKG 327

Query: 274 NKSYKIVRVLNS-----FGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            ++ +I  +         G   +  D++K   +          + +
Sbjct: 328 KRTMQISSMPVKRDGQFDGTVFVLNDITKLRNLERIRRDFVSSVSH 373


>gi|319651062|ref|ZP_08005196.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317397232|gb|EFV77936.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 607

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 28/384 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNT-LVKVQGETIDHLSEGVAVFGPDGRIKLSN-PAFRSLW 467
           G     F +LT ++           +     + ++++GV      GR+ L N PA + L 
Sbjct: 238 GQLAITFNSLTKKLQEAHATTEGERRKLSSVLSYMTDGVIATDRKGRVILINEPAAKMLN 297

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
            + E  LS  + I ++       YN  +  +   ++I  +  + K+L             
Sbjct: 298 VSRETVLS--SPIVSLLG-LEEDYNFEELLNERDSVILDYSSKSKTLILRAN-------- 346

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +S+I             + D    E           K D  +  FV +VS+ELR+PLT +
Sbjct: 347 FSVIQKETGFVNGLITVLHDITEQE-----------KIDMERREFVANVSHELRTPLTTM 395

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + + L              +++     +  ++ LVND+L L+ +D+   +L       
Sbjct: 396 RSYLEALAEGAWRD-EEIAPNFLDVTQNETERMIRLVNDLLQLSKMDSKDYRLTKDWTDF 454

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
               N +         + N+  +            D  +L Q+   I+SNA+ +S +G  
Sbjct: 455 IFFYNRIIDRFE-MTKQQNVTFERKLPDHSAFVEIDEDKLTQVLDNIISNALKYSPEGGK 513

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           V       +   + SV + G  IP++    +F RF        R   G GLGL+I +  +
Sbjct: 514 VTFSIEEKDEFIVVSVSDQGVGIPKENIDQIFERFYRVDKARTRKLGGTGLGLAIAKEMV 573

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             HGG +  +S++   TTI+  +P
Sbjct: 574 EAHGGKIWAASTEGKGTTISFSLP 597


>gi|220909068|ref|YP_002484379.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865679|gb|ACL46018.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 998

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 135/321 (42%), Gaps = 13/321 (4%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGW---DLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           L  G  IR +          +D     DL   I     DE   L      +S      ++
Sbjct: 411 LYIGEFIRKLGQRLDPLVKAADAMAAGDLGLRIQDHEPDEIGELARAFNQMS-----ANL 465

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                           +   + +AL    +A   A++ K++F+ ++S+ELR+PL  +IG+
Sbjct: 466 SDSYAHLEQRVKERTQELEASNQALDLARDAAEAANKAKSTFLANMSHELRTPLNAVIGY 525

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +D+L         S     ++ I+++   LL L+N +LDL+ ++AG M+L      +N+L
Sbjct: 526 SDMLMEDL---EESDYLPDLQKINSAGKHLLELINAVLDLSKIEAGKMELYLEEFNINEL 582

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +  V   +   M +N+ R  +     LG   AD  ++ Q    +LSNA  F+  G+  + 
Sbjct: 583 VQGVAALVKPLMDKNHNRFALQIPDTLGKMTADATKVRQSLLNLLSNASKFTKAGTVTLN 642

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               D     F + + G  +  +    +F  F    +   R   G GLGL+I   F  + 
Sbjct: 643 VWIDDTQRVFFQISDTGIGMSPEQLDKLFQEFTQADNSTTRNYGGTGLGLAISRRFCRMM 702

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG ++++S     +     +P
Sbjct: 703 GGDITVTSEPGVGSVFTIELP 723


>gi|189466982|ref|ZP_03015767.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
 gi|189435246|gb|EDV04231.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
          Length = 712

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 162/375 (43%), Gaps = 17/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +ET      +   + +D+++  + V   D  ++  +N  FR              
Sbjct: 202 TKRWQVETSLQLSQRTMQKVLDNINANIFVCDYDTQKVLFANKPFREEAGQVSENAECWK 261

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +         +  +    D                      +++       + +     
Sbjct: 262 MLNAGLNGLCAHCPKPQLLDANRKFT------GVHFWEDYNPVTERWYTIQSMAIKWLDG 315

Query: 539 MLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T   + E  L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 316 RWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL 375

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 + + ++  Y+  +  ++ +LLNL++DILD++ ++AG ++L  + + L  L  EV
Sbjct: 376 AE----ADDDERESYMSLVEENNELLLNLISDILDISKIEAGTVELTITRVDLPRLCREV 431

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + + K HE  + +            AD+ R++Q+ S  ++NA+ F++KGS  +     
Sbjct: 432 ISTCSHKKHEEAVVLCFDESSPQIMVDADKNRIMQVLSNFVTNALKFTTKGSVTLSYRLE 491

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           ++    F V + G  IP +    +FNRFV      Q  G GLGLSI +S +   GG + +
Sbjct: 492 NDTQVRFCVTDTGKGIPAEQQHEIFNRFVKLDSFSQ--GAGLGLSICQSLVERMGGEIGV 549

Query: 775 SSSDEGVTTINCRIP 789
            S +   +      P
Sbjct: 550 ESREGEGSCFWFTHP 564


>gi|153869800|ref|ZP_01999325.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073728|gb|EDN70669.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 652

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 137/282 (48%), Gaps = 3/282 (1%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           ERK  + T ELLS + L    I       +     V +  + ++AL E  EA   A+  K
Sbjct: 82  ERKVEERTTELLSANKLLTQEIIERKQIEIALTQEVIERQKVQQALKEAKEAAEAANVAK 141

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+ELR+PL  IIG++++L          +    +  I  +   LL L+ND+LD
Sbjct: 142 SQFLANMSHELRTPLNAIIGYSEMLAEEAEDLEQEEFIPDLHKIKTAGNHLLGLINDVLD 201

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           L+ ++AG M+L    I LN L++EV  +    + +      +    +LG    D  +L Q
Sbjct: 202 LSKIEAGKMELLIEPIDLNILMDEVISTTQPLIEKKANNFDIKRSQQLGEIQTDITKLRQ 261

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +   ++SNA  F+ KG T+ L    +     F V +NG  + E+    +F  F       
Sbjct: 262 MLLNLISNAAKFTEKG-TISLNIQSEADLIKFCVTDNGIGMTEEQQAKLFQPFTQADAST 320

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RR  G GLGL+I + F  + GG +S+++     +T +  +P
Sbjct: 321 TRRFGGTGLGLTITKQFAEMMGGSISVTTEFGKGSTFSISLP 362


>gi|126658998|ref|ZP_01730139.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619655|gb|EAZ90383.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 881

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 25/295 (8%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            D+R +L    EL    +L  ++      Q      ++   +  ++A     +AL + + 
Sbjct: 185 QDKRPTLTQRDELHQLEILIATL-----GQYFQDLQDLQTKMAQQKA---SEQALEELNR 236

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  + +E+R+PL  + G T LL  ++   LN +Q ++V  I  S   LL ++N+I
Sbjct: 237 AKSEFLAMIGHEIRTPLNAVTGMTGLLLDTQ---LNDQQKEFVSIIRNSGENLLTMINNI 293

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           LD + ++A  ++L      L   + EV +   ++  + N+ +  + +     + + D  R
Sbjct: 294 LDFSKIEAQKLELEEQPFELGPCIEEVLRLFVSQASKKNLELAYLIESNTPSAIIGDSTR 353

Query: 687 LLQIFSKILSNAMDFSSKGSTVI------LKAARDNG-----DFIFSVKNNGSSIPEDMC 735
           L QI + ++ NA+ F+ KG  VI      +K+ +D+      +  F+VK+ G  IP D C
Sbjct: 354 LKQILANLIGNAVKFTKKGEVVIYVNATPIKSRQDSKQNSRYELRFAVKDTGIGIPSDRC 413

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F  F        R   G GLGL+I +    L GG++ + S++   +T N  I
Sbjct: 414 NRLFQPFSQVDASTTRKYGGTGLGLAISKGLSELMGGNMWVHSTEGKGSTFNFTI 468


>gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
 gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
          Length = 574

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 140/320 (43%), Gaps = 38/320 (11%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           I    +        +DL A + T  +DE   L  +L  L + V E +             
Sbjct: 277 IVTQVAEQVARKSNFDLRAPVTT--EDEIGLLAKSLNRLIERVSERT------------- 321

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-S 601
                     + L +  E    A + K+ F+ +VS+ELR+PL  +IG + LL+       
Sbjct: 322 ----------KELEQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLQDDATDLD 371

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L       +E I+++   LL L+NDILDL+ ++AG M L   T  +  L+N V  ++ + 
Sbjct: 372 LTGDFITDLETINSAGRHLLELINDILDLSKIEAGKMTLYPETFEIAKLINNVVLTVKSA 431

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----- 716
           + +NN  ++V  D +LG+  AD+ R+ Q+   +LSN+  F++ G  V L   R+      
Sbjct: 432 IDKNNNILEVYCDQQLGTMYADQTRMRQVLLNLLSNSAKFTTNG-KVTLTVKREKTDLPP 490

Query: 717 ----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGG 770
                   FSV + G  + E   + +F  F            G GLGL+I   F  + GG
Sbjct: 491 EAAFDMITFSVTDTGIGMSESQQQQLFKPFTQGDTSTTKRYGGTGLGLAISRHFCQMMGG 550

Query: 771 HVSISSSDEGVTTINCRIPS 790
            V + S     +T    +P 
Sbjct: 551 EVFVKSQPGVGSTFTVHLPL 570


>gi|228905409|ref|ZP_04069364.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
 gi|228854229|gb|EEM98932.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
          Length = 588

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 148/392 (37%), Gaps = 27/392 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 322

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            +  +  FV +VS+E
Sbjct: 323 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IEGERREFVANVSHE 368

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 369 LRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 427

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 428 LMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNAL 486

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 487 KYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 546

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+I +  I  HGG +   S +   TTI   +P
Sbjct: 547 LAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|282924834|ref|ZP_06332500.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C101]
 gi|282313200|gb|EFB43596.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C101]
          Length = 554

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|49483934|ref|YP_041158.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257425807|ref|ZP_05602231.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428473|ref|ZP_05604871.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431107|ref|ZP_05607484.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433790|ref|ZP_05610148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436706|ref|ZP_05612750.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904263|ref|ZP_06312151.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906088|ref|ZP_06313943.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909003|ref|ZP_06316821.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911319|ref|ZP_06319121.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914488|ref|ZP_06322274.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919457|ref|ZP_06327192.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958443|ref|ZP_06375894.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503566|ref|ZP_06667413.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510581|ref|ZP_06669286.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|293537123|ref|ZP_06671803.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428263|ref|ZP_06820892.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590774|ref|ZP_06949412.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242063|emb|CAG40762.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271501|gb|EEV03647.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275314|gb|EEV06801.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278055|gb|EEV08703.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281883|gb|EEV12020.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284057|gb|EEV14180.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282317267|gb|EFB47641.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321669|gb|EFB51994.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325014|gb|EFB55324.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327267|gb|EFB57562.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331380|gb|EFB60894.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595881|gb|EFC00845.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790592|gb|EFC29409.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919968|gb|EFD97036.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095232|gb|EFE25497.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466472|gb|EFF08993.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|295127663|gb|EFG57300.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575660|gb|EFH94376.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437850|gb|ADQ76921.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH60]
          Length = 554

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|329724647|gb|EGG61153.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU144]
          Length = 565

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 165/377 (43%), Gaps = 40/377 (10%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         T++++   V +    G I ++N A+  ++   +  +  
Sbjct: 210 DLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYQVFN-PDQMVEN 268

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
            ++I  I  +  +             II SF  E+   + L+  +  +     + S IP+
Sbjct: 269 KSYIGFIDDSIEKL------------IIESFRTEKVIYEQLEVAINNVHTKYFDVSCIPI 316

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                      V         +      L+K + ++  FV +VS+EL++P+T+I GF + 
Sbjct: 317 LTKSKKNLQGMVV--------VLHDITNLQKLENLRREFVANVSHELKTPITSIKGFAET 368

Query: 594 LKTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           L     G+ N +QS   ++  I   S  + +LV D+LDL+ ++    +L  + + L++L 
Sbjct: 369 LIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIEQQK-ELEINYMNLSELA 424

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             +  ++ T+ +   I+I+   +  +    A   ++ Q+ + +LSNA+++SS+ + VI++
Sbjct: 425 INIIDNLQTQAYNKRIKIQSEIEKDVI-IEAHENKIAQVITNLLSNAINYSSEDNKVIVR 483

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
             R++      +++ G  I E   K +F RF            G GLGLSI +  +  H 
Sbjct: 484 VYRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHN 543

Query: 770 GHVSISSSDEGVTTINC 786
           G + + S     +    
Sbjct: 544 GRIDVKSEPGKGSIFKV 560


>gi|298694962|gb|ADI98184.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 554

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDPQS-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNT 431
            ++T    LE     
Sbjct: 319 HDITNLKQLENLRRE 333


>gi|283470959|emb|CAQ50170.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 546

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 189 DLARRLQKLNNEQKMQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNITHNIEQI 248

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 249 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 295

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 296 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 341

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 342 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 399

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 400 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 458

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 459 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 518

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 519 EAHQGNIEVNSQVGKGSTFKVIL 541


>gi|189466962|ref|ZP_03015747.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
 gi|189435226|gb|EDV04211.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
          Length = 870

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/507 (21%), Positives = 205/507 (40%), Gaps = 31/507 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  + +Q      I  ++   +  +D +  + F NR+ + + E+D           ++  
Sbjct: 376 QNRLVEQRDEFDNIFCSIRDGLITYDTDFRIHFVNRALMLMLELDPDTHTARYYEGQMAG 435

Query: 358 FLRSANKLPEQLNWKTWKE--------NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            +       E +     K+         I       E HK T+   +G+ +  I + N  
Sbjct: 436 SIFHIYSNGEDILQALLKQVRAERRVIPIPEKAFMQEVHKGTYFPVSGEIV-PIYSKNKM 494

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G      N++ +           ++     +   +  +V+     I+  +  F      
Sbjct: 495 TGMAICCRNISEE-----------EMHKRFFNLAVDASSVYPWQYDIRTHSFHFSGALLD 543

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII------TSFDDERKSLQGTLELLSD 523
                   T +R          +  +    F AI       T      +S +G  E    
Sbjct: 544 YFGLPGKQTILRKELELFIHADDLEEAHRHFTAIFKGEEMDTRMSFRMRSGEGKYEWWEF 603

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRS 582
               Y+ +       +L         +  E  L    +   +AD +K++F+ ++S+E+R+
Sbjct: 604 RSASYNGLDSEAPYMVLGVCQSIQRYKTTEEELIAARDKALQADTLKSAFLANMSHEIRT 663

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL +I+GF+DLLK     S   +  Q+V+ I+ + T+LL L+NDILDL+ +++G M   +
Sbjct: 664 PLNSIVGFSDLLKDIDAFS-PEEVKQFVDTINTNCTLLLALINDILDLSRIESGSMDFRF 722

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           +   L  ++ ++  S    M    + + +    +  S V D  RL Q+ +  ++NA  F+
Sbjct: 723 AGYNLMFVMQQIYDSQRLSMPP-GVELVMKLPEESKSIVTDSIRLKQVINNFINNAKKFT 781

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           ++GS        D G  +F V++ GS I E+  + +F RF       Q  G GLGLSI +
Sbjct: 782 TQGSITFGFQTEDPGYTVFFVEDTGSGISEENQRRIFERFYKVDSFTQ--GAGLGLSICQ 839

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
           + +    G +++SS     T    R+P
Sbjct: 840 TIVERFRGEINVSSELGKGTRFTVRVP 866


>gi|303247580|ref|ZP_07333851.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491060|gb|EFL50954.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 839

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 114/654 (17%), Positives = 222/654 (33%), Gaps = 69/654 (10%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-----EG 230
            +  +       L+     F  L++         D AG I+ AN               G
Sbjct: 55  RQDEQLRETRAALAETRERFADLYECAPIGFLSLDAAGGIVAANRQAAAMLGHTPETLPG 114

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-----RVLNS 285
             F + +  + +     ++ R   +   +      +   + G  +  +I      R    
Sbjct: 115 QPFSRFVARADQPCLRALRDRAGRTGERQTAGIRLLRPDQTG--RYVEIAATPAGRPTGP 172

Query: 286 FGEAGIAI---DVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVEL 338
               G+ I   D+       + L     IL      +  F    ++   +++   + ++ 
Sbjct: 173 DTGRGLHIALSDLPPRRESEEALRLADGILETGPAFLLRFAVSGEEPGPVEYV-SANIDR 231

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           +      L +       L       K+   L       N   +        D        
Sbjct: 232 FGFSREKLISGALLPRELVHADDLPKVEAALRENAVAGNDACILDYRLRTGDGQTRYVTD 291

Query: 399 TLHVIVTSNPRGGTI-WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPD 453
              ++  +  R   +  +  ++T          T        +D     +         D
Sbjct: 292 HARLLRDAFGRVNAVQSLVLDVTDSALARQDLET-------VLDSAPIPIVKVRVTPHGD 344

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             ++  NPA   L+       S   ++     TC     +S         +T+   ER  
Sbjct: 345 RILEYQNPAAARLFGEAALGKSCKAYLCK-KETCPALSADSGVVRDRECAVTTLRGERVM 403

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            +   +L   S              +   V+VT+ +R  + LT   EA   A++ K+ F+
Sbjct: 404 YKTAHKLPDGS------------GIIEAMVDVTELMRTRQNLTRAMEAAEAANKAKSEFL 451

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  I+G T+L   +    L  +Q +Y++    S+  LL++VNDILD + +
Sbjct: 452 ATMSHEIRTPINGIMGMTELALQT---DLTGEQREYLDLARQSALSLLDIVNDILDFSRI 508

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           +AG ++L+ +      +L    +   T    +   + +     +  + + D  RL Q+ +
Sbjct: 509 EAGRVELSAAPFSPRRMLGRCLRLFDTLAARHGNTLSLSVHPDVPETLIGDAGRLGQVVA 568

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-----------------FIFSVKNNGSSIPEDMC 735
            ++SN + F+ +   V L    D  +                  +FSV + G  IP    
Sbjct: 569 NLVSNGLKFT-RNGDVRLCVEPDTQNEILCADPSDTPPGNRVSLLFSVIDTGIGIPAAKQ 627

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +F  F        R   G GLGLSI  + + L GG + +SS     +T    
Sbjct: 628 DRIFEPFTQLDGSLTRGVGGTGLGLSICNNLVALMGGRLWLSSRPGKGSTFYFT 681



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/319 (10%), Positives = 85/319 (26%), Gaps = 39/319 (12%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
           +L+++  +     + + +   ++  L        +  D          Q    +      
Sbjct: 52  ALSRQDEQLRETRAALAETRERFADLYECAPIGFLSLDAAGGIVAANRQAAAMLGHTPET 111

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQ----SFDLVAETQNDCAIKIE----GRVSG 161
                F  ++       L    ++  + G+       L+   Q    ++I     GR +G
Sbjct: 112 LPGQPFSRFVARADQPCLRALRDRAGRTGERQTAGIRLLRPDQTGRYVEIAATPAGRPTG 171

Query: 162 -----SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
                      +  L           L    L    +       S +         G + 
Sbjct: 172 PDTGRGLHIA-LSDLPPRRESEEALRLADGILETGPAFLLRFAVSGEEP-------GPVE 223

Query: 217 WANIS-----YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
           + + +     + +     G +  + +  +  L K E   R  + +  +    +       
Sbjct: 224 YVSANIDRFGFSREKLISGALLPRELVHADDLPKVEAALRENAVAGNDACILDYRLRTGD 283

Query: 272 GNNKSYKIVRVLNSFG------EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD-- 323
           G  +       L             + +DV+        L     +L +  + I      
Sbjct: 284 GQTRYVTDHARLLRDAFGRVNAVQSLVLDVTDSALARQDL---ETVLDSAPIPIVKVRVT 340

Query: 324 --QNRYLQFHNRSFVELWE 340
              +R L++ N +   L+ 
Sbjct: 341 PHGDRILEYQNPAAARLFG 359


>gi|189203185|ref|XP_001937928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985027|gb|EDU50515.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 918

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/690 (15%), Positives = 234/690 (33%), Gaps = 89/690 (12%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
            R  S   I+S+            +           L   +        ++ AN +    
Sbjct: 18  CRSASPSSIHSDNMSM---HLAAPSATMASLTALQYLPVPILVLSSQKTVILANEAMAPT 74

Query: 226 TETEG-IVFQKAIGE-------------------SRKLFKEEIKKRMISSSALEKNFCET 265
           T  +  +   + +                      R+          + +  L++     
Sbjct: 75  TAAKNTLSSSRMVNRTNTGAYLDKSRSSGSSTSSGRRSGSNSNGASKVVTPTLQQPEFPP 134

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHNLTVAIAI 321
                 GN        V     +   AI     +     + +       I + + V +  
Sbjct: 135 RGPPTKGNGDMAASASVFQKATQLKDAILNSITMPAYAQIEENEKQFEYIANFMPVMVWT 194

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFS 380
              +    + ++ + +   +               + L    +LP    +  T     F 
Sbjct: 195 TTPDGMHDWFSQRWYDYTGLTPD------------KSLGEGWRLPFHPDDMATTAPRWFH 242

Query: 381 VYKSSETHKDTWH--LPNGQTLHVIVTSNP---RGGTI----WMFENLTVQVDLETKYNT 431
             K+ + +   +     +G+   ++  + P     G I        ++   V    +   
Sbjct: 243 SLKTGDEYNTEYRCQRYDGEWRWMLGRALPFYDDSGRIVKWFGTCTDIHDLVMARQEARQ 302

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +   + I +    + V   +  +K+            E         RNI        
Sbjct: 303 TREQLQQVIQYAKIVLWVIDRNNEVKV----LEGDITPHERMKKKELLGRNILDVFELTG 358

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-------------QT 538
           N+   W      I       + + G   +         ++PL +A               
Sbjct: 359 NDRKRWQGPIQEILQGKQSDEIVNGGY-MSEARYYRTRLVPLMSASRTAGIEGNAFVDGV 417

Query: 539 MLTFVNVTDSVRAER----------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +   +++T+    E            L     A ++A  +K+ F+ ++S+E+R+P+  +I
Sbjct: 418 IGVSMDITELREREEQLKEQEKENSRLLANEAAAKEASRMKSQFLANMSHEIRTPIAGVI 477

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G ++LL      +LN +Q    E I  S+  LL ++NDILD + V++G + +      L+
Sbjct: 478 GMSELLFDM---NLNDEQKDCAENIHRSANSLLTVINDILDFSKVESGRLDVEEVQFSLS 534

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKG 705
            +L +V + ++       +  +     ++ +    + D  RL QI + +L+N++ F+S G
Sbjct: 535 VVLRDVNKMMSFAAQRKGLDYQSSIQDEVQADLRVMGDPGRLRQILTNVLTNSIKFTSVG 594

Query: 706 ST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +  + +  ++++ D +   FSV + G  I E++ K +F  F        RR  G GLGL+
Sbjct: 595 TVKLSVMISQESKDMVTVNFSVVDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLT 654

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ++ + L  G + + S     TT    IP
Sbjct: 655 ISKNLVELMKGQIWLDSKLGQGTTATFWIP 684


>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
 gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
          Length = 1035

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 155/393 (39%), Gaps = 36/393 (9%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             + +  +   +  L+    T         +    G+      G+     P F +    +
Sbjct: 337 AVLLITRDRQRKRSLQKLLETSNARFRSVSEMAPVGIFTLDAQGQ-----PTFLNQRLLQ 391

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVL 526
             ++     +           +  D   +  A   +   +R        ++    S   +
Sbjct: 392 LLQVHN---LEEAQQQWIERLHPEDRDRVLKA-WAACQQKRVPFHERFRIVHNDSSSHWI 447

Query: 527 EYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              IIPL  +      + T+ +++  ++ +  L    +A  +A   K+ F+  +S+E+R+
Sbjct: 448 NARIIPLQESSATDSFVGTWEDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRT 507

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  IIG T LL  +    LN +Q ++V  I  S   LL ++NDILD + +++G ++L  
Sbjct: 508 PMNAIIGLTGLLLDT---PLNPQQQEFVNTIRLSGDALLGVINDILDFSKIESGKLELES 564

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDF 701
               L   + EV   +A++  E  + +    D G   + + D  RL Q+   ++ NA+ F
Sbjct: 565 YPFNLRTCVEEVLDLLASRAAEREVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKF 624

Query: 702 SSKGSTVILKAARDNG------------DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           + KG  V L                    ++F++++ G  I       +F  F  V  + 
Sbjct: 625 TQKG-NVTLYVKAKPMPMSQYEFMPSYYSYLFAIQDTGIGISAAGMNRLFKPFSQVDAST 683

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             Q  G GLGL I +  +   GG + + S   G
Sbjct: 684 TRQYGGTGLGLVICQRLVERMGGQIWVESKKTG 716


>gi|162448655|ref|YP_001611022.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159237|emb|CAN90542.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 534

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 18/264 (6%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  +    L +  E L++ D +K++F+  VS+ELR+PLT+I+G++++L     G L  
Sbjct: 256 FRELSQKNAELEQAYERLKELDRLKSNFLATVSHELRTPLTSIMGYSEMLAEGIGGPLTD 315

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q ++++ I + S  LL L+  +LDL+ +++G + ++ + + +  +L E   +IA    +
Sbjct: 316 EQREFIDTIRSKSEQLLGLIMSLLDLSKLESGTLIVHRTEVAVGPVLVEAASTIAPAASK 375

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------ 718
             + +++ ++  L   + D  RL Q+F  ++ NA+ F+  G  V+L A   + D      
Sbjct: 376 KGVELRIQAEDDLPPVLGDGDRLRQVFINLVENAVKFTEAGGEVLLVARAVSEDMDDLPG 435

Query: 719 ----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
                         V + G  IP      VF+ F        R   G GLGLSIV+  + 
Sbjct: 436 LVLVAPLQQAVEIRVVDTGIGIPAGERLKVFDPFYQIDQSSTREHGGTGLGLSIVKRLVE 495

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
            H G V I  +D   T    ++P+
Sbjct: 496 AHSGTVRIEPNDPRGTVFVVKLPT 519


>gi|296449930|ref|ZP_06891694.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
 gi|296261200|gb|EFH08031.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
          Length = 441

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 24/365 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L       +  +S G+     +G I L N   + + K+E N+L  G +I  +  
Sbjct: 80  EVQYKHLQ--LKSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK 137

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                  E +        I S D+E       +    D V +  + P+    T    +  
Sbjct: 138 -------EEEILKQILRFIGSKDNE----TANITTKDDIVYKIKVDPVYLQNTNNVIIGS 186

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             ++              K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++
Sbjct: 187 IVNIE-------DITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR 239

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            ++++E I + S  L  L++DIL L+ V+     L    +V+ D+  EV +       E 
Sbjct: 240 -NRFLEIIESESDRLKRLIDDILLLSFVE-NKDTLLMENVVVYDVFKEVYEITQHSASEK 297

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI +    D K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +
Sbjct: 298 NIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVID 357

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP++  + +F RF        R   G GLGL+I +  +    G + + S     + 
Sbjct: 358 NGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSE 417

Query: 784 INCRI 788
               I
Sbjct: 418 FIVTI 422



 Score = 38.8 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V  +      IL +++  I   D N  +   N    E+ + +   L    + + +   
Sbjct: 79  EEVQYKHLQLKSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVV--- 135

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           ++    L + L +   K+N  +   + +   D  +      +++  T+N   G+I   E+
Sbjct: 136 IKEEEILKQILRFIGSKDNETANITTKD---DIVYKIKVDPVYLQNTNNVIIGSIVNIED 192

Query: 419 LTVQVDLE 426
           +T +V LE
Sbjct: 193 ITKKVKLE 200


>gi|168334601|ref|ZP_02692754.1| multi-sensor signal transduction histidine kinase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 609

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 160/388 (41%), Gaps = 28/388 (7%)

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVFGPDGRIKLSNPAF 463
           +S+  G     F  +  ++       +  K + E  +++L++GV  F   G +  +N   
Sbjct: 235 SSDEIGQLTMSFNQMAQELRRTLLDISSEKNKLERILENLADGVLAFNRQGVLIHANSVS 294

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             +                I       + +      F  I    +D+ +  QG +  + D
Sbjct: 295 YDMIGQ-----------STIDHRFDFIFPKFGLDVSFDNI---LEDDEQYKQGIMMNIGD 340

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             + +      ++      + V       +          K D+++  FV +VS+ELR+P
Sbjct: 341 KFISFHFASYESSHGEKEGLTVVMQDVTSQQ---------KLDQMRKDFVANVSHELRTP 391

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT I  +T+ L +  +         ++  +   +  +  LV+D+L+L+ +D   M+LN  
Sbjct: 392 LTTIKTYTETLISGAIDE-KETALDFLSVMEKETDRMTTLVHDLLELSKIDNKQMQLNIQ 450

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
            + +  LL +  ++ A +    + +IK+  +      +  D  R+ Q+F  ILSNA+ ++
Sbjct: 451 VMDIYSLLLDTIRAQAIQAKCKHHQIKLSYNKNKEYLIEGDPARIGQVFHNILSNAIKYT 510

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
                + +  + ++   +  VK+ G  + +   + +F RF         +  G GLGLSI
Sbjct: 511 EDNGQIKINLSSNDQQVVIKVKDTGIGMSKKDLERIFERFYRADKARSRKMGGTGLGLSI 570

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  + LHGG + + S+    TT+    
Sbjct: 571 AKEMVELHGGSIKMESALGHGTTVIXTF 598


>gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 123/273 (45%), Gaps = 15/273 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLT 585
            +I     +  L       + R E A  +  E  R+A   +  K+ F+ ++S+E+R+P+ 
Sbjct: 123 RVIRHARGRFKLEMELRESNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMN 182

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG   LL +     L ++Q  YV+ I  S   LL L+N ILD + ++AG ++L+Y   
Sbjct: 183 GVIGMASLLLSE---DLTAEQLSYVKVIKTSGEALLELINQILDFSKIEAGRLELDYRPF 239

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSK 704
              +L+ EV   +  +    N+ +       + +    D  RL Q+   ++ NA+ F+  
Sbjct: 240 SPRELVQEVVLLLQPQAAAQNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEV 299

Query: 705 GST-VILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
           G   + L  A  +         F+VK++G  IP +    +F RF         +  G GL
Sbjct: 300 GGVAIELSPAPADPAAPEFSCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGL 359

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I    + L GG V + S     +T    +P
Sbjct: 360 GLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392


>gi|189467145|ref|ZP_03015930.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
 gi|189435409|gb|EDV04394.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
          Length = 979

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 174/408 (42%), Gaps = 23/408 (5%)

Query: 400 LHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETI---------DHLSEGVAV 449
              I+  +    TI +F  ++T + + E     + K    T+           L   +  
Sbjct: 434 YEFIICRSSEKYTIDIFGVDITARNEAENALREINKKLEMTLSVARIIPWRWDLKNDMIT 493

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              +  +   N         + + +    + R +         +     +   +  + ++
Sbjct: 494 CESEQILAHMNFTKEEGSTPQAHIIKASEYFRKMHPEDLERMQQVHKNLISGKLQHAKEE 553

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRK 564
            R   +       D +   +I+   + Q      + + + +T+  R E+AL    E   +
Sbjct: 554 FRIITEVEGRKFIDWLETNAIVDQYDEQGSPISLVGSLLLITERKRQEKALIAAREKALE 613

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           ++ +K++F+ ++S+E+R+PL  I+GF+ LL  ++      ++ +++  I  ++ +LL LV
Sbjct: 614 SERLKSAFLANMSHEIRTPLNAIVGFSSLLTATE---DEQEREEFISIIENNNQLLLQLV 670

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +DILDL+ ++A  ++ NY  + LN L  +V+ ++  ++   N+ ++ I          ++
Sbjct: 671 SDILDLSKIEANTLEFNYRDVDLNGLAKDVESTVRRRLKP-NVVLEFIPGAAQCHVQTEK 729

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   +L NA  F+  GS +         +  F VK+ G  I ++    +F RF  
Sbjct: 730 NRLSQVLINLLVNATKFTQTGS-ITFGYEIRGKELYFYVKDTGMGISQEDQNKIFERFTK 788

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPSK 791
                Q  G GLGLSI ++ I    G + + S      +T    +P +
Sbjct: 789 VDTFTQ--GTGLGLSICKNIIEKMKGRIGVESEGKGKGSTFWFTVPYQ 834


>gi|256840790|ref|ZP_05546298.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738062|gb|EEU51388.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 622

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/630 (17%), Positives = 236/630 (37%), Gaps = 49/630 (7%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANIS----YKKNTETEGIVFQKAIGESRKLFKEEI 248
           S  +++ +     +   D+   ++    +    Y            +A+    K + +  
Sbjct: 12  SGLEMIMEKSPDTIVLVDRNLTLVKVISAKDDYYHYLANNCIGKQPQALFPDGKNYDQYE 71

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL---NSFGEAGIAIDVSKEITVNDQL 305
             R       E+      S       K+Y  +      N         +VS   T  +  
Sbjct: 72  IYRAAVKRVFEEQVKVDFSFEVSFEGKNYYYLSQASLFNEELVIVYTRNVSSLKTEKNLQ 131

Query: 306 THTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSND---------- 353
                IL  L + + + D +      + N    E+  I+   +  +   +          
Sbjct: 132 ELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGIETREIEGHDDFEVNYNALMTAE 191

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           E LE   +  K      +K   ++    Y+  E  K    L NG+ L            +
Sbjct: 192 ERLETDMNVIKTGLTARFKGKVKSASGDYRDIEVAKYPISLNNGKPL-----------VL 240

Query: 414 WMFENLTVQVDLETKYNT--LVKVQGETIDHLSEGVAVFGPDGR------IKLSNPAFRS 465
            ++ ++T ++  E       ++      I  +        PD        +   N    +
Sbjct: 241 ALWRDITSELATENTLRRTRILTKMALRISDIRTCSIFIDPDSTHNFKDSVVTLND--WN 298

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
               +   +S G  I         +Y+          I  +  + R    G  E +   V
Sbjct: 299 TMSEDMIEVSWGQFISRAHPDDQEHYHNMFTRLCRGEISEARIEARMLFPGKKEYVWREV 358

Query: 526 LEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                      +    +    N+ +    E +L E       AD++K+ ++  +S+E+R+
Sbjct: 359 FATVYERDDKGRPSVILGCSTNIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRT 418

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I GF++L+        + ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y
Sbjct: 419 PLNAITGFSELMA---FADTDEERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITY 475

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + +++L++ +  S   ++    +++ +  +     F  D  RLLQ+ + +++NA+  +
Sbjct: 476 EQLDVSELMDTIYASAKLRVP-GGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNT 534

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS  +  A + +    F V++ G  I ++  K VF+RFV         G+GLGL+I +
Sbjct: 535 KEGSITMGYAIQPDDQLRFYVRDTGIGIDKEKLKDVFDRFVKINDY--MEGIGLGLAICK 592

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +   GG + ++S     +  +  +PS E
Sbjct: 593 GLVVKMGGSIHVTSELGVGSEFSFILPSHE 622


>gi|223983989|ref|ZP_03634147.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM
           12042]
 gi|223964065|gb|EEF68419.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM
           12042]
          Length = 853

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/529 (19%), Positives = 205/529 (38%), Gaps = 48/529 (9%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +  +  Q  +   + + L  A+A+    +   L   NR    L    L       ++DE+
Sbjct: 311 QRRLTHQTNYISHLYNALPEAVALISTTQPYRLLQLNREGWRLMGYTLE------NSDEV 364

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLH---VIVTSNPRG 410
           L  L     +P +L+++ +   I +   S E     +     +G       +I  +    
Sbjct: 365 LN-LDLRASMP-KLDYEHFAGQIEAAICSGEKINLVEMMKNRDGSVFWTSGIIEKTLDEN 422

Query: 411 G---TIWMFENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G    I+ F ++T +   E       ++ +   +  LS    V      +      F  +
Sbjct: 423 GEPVLIYAFHDITKEKQAEEAEKQRTLQERLTLVSALSNAYPVI-ISLNLTQDQVQFVYV 481

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-----L 521
                 RL        + A      +     D     + +  +      G + L     L
Sbjct: 482 RPGLMIRLGEQETYSQLYAELEASIDLEFRQDYRQFQLNALQEAFAGGIGEVVLEMKMKL 541

Query: 522 SDSVLEYSII-------PLPNAQTMLTFVNVTDSVR--AERA---LTEKNEALRKADEIK 569
           +D  L ++         P    Q  +     TD  R  AER    L    E    A   K
Sbjct: 542 TDEQLHWTTTQIIHVNNPYSEDQLAILISRRTDEQRLKAERQQEILKTALENATAASAAK 601

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+++R+P+  I+G T +       +   +    +  IS SS  LL+L+NDILD
Sbjct: 602 SQFLSNMSHDIRTPMNAIVGMTAI--AGAHLNDPERVQACLRKISLSSKHLLSLINDILD 659

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLL 688
           ++ +++G + +        +L+ EV + +  +  E N   +   +  +    V D  R+ 
Sbjct: 660 MSKIESGKLTIAQEPFNFAELITEVVELVRPQAEEKNQIFEFQPERLEKEGVVGDPLRIR 719

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRF 742
           Q+   ILSNA+ ++ +G T+ L+ ++ +       +F+F   + G  +  +    +F  F
Sbjct: 720 QVCINILSNAVKYTPEGGTITLEISQRSSLYKGCQNFVFRCADTGIGMEPEFMTRLFQPF 779

Query: 743 VSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + H       G GLG++I ++ ++L  G + ++S+    +     +P
Sbjct: 780 ERSDHPQARNENGTGLGMAITKNLVDLMNGEIQVTSTAGQGSVFTVILP 828


>gi|45657401|ref|YP_001487.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600640|gb|AAS70124.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 731

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 7/245 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L  + E   KA++ K+ F+ ++S+ELR+PL +IIGF+ L++         ++++Y
Sbjct: 324 QRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQ---FPEGMERENRY 380

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S   LLN++NDILDL+ ++A  + LN S   L +L++   + I  +     + +
Sbjct: 381 LDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEAITKKLEM 440

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
                 K       AD +R+ Q+   +L NA+ F+     +++   +   +F  +V+++G
Sbjct: 441 TFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQLAVQDSG 500

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +    +F  F       R    G GLGL IV+  +  H G + + S+    +   
Sbjct: 501 IGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESALGKGSKFV 560

Query: 786 CRIPS 790
              PS
Sbjct: 561 VIFPS 565


>gi|37519602|ref|NP_922979.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35210593|dbj|BAC87974.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 692

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/519 (19%), Positives = 190/519 (36%), Gaps = 78/519 (15%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           ++ G  G  ++  + +    Q    YE  +      I + D        N +      + 
Sbjct: 90  HAAGLVGERLEAEERLDEIHQRNLMYEKYIEMAPDQIGLLDSELRTLTVNAALSRFSGMP 149

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT--- 399
             ++        L E     + L +  +   W++ I  V+++ E    ++    G     
Sbjct: 150 KEWILGK----SLWEMGIPESILAQMAD---WEQLIRRVFETGEPGTTSFAYSVGDASCK 202

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           L+    + P+                               +   E VAV      I   
Sbjct: 203 LYCYSLAVPQ------------------------------FNCRGEVVAVLN----ITYD 228

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             A    +  E+        +R +AA            +  A +    ++  +      +
Sbjct: 229 RAALEMPFNPEDWAGMGEQLMREVAA-------HRVTQEELARLNAELEERVRERTVRYK 281

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           LL+  +                   + +  R E  L         A   K+ F+   S+E
Sbjct: 282 LLNQKL----------------RAEIGERQRIEVELQAAQARAEAAARAKSDFLAAASHE 325

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+P+  II  TDLL  S LG   ++Q +    I      +L+L+N+ILD++ ++AG M+
Sbjct: 326 LRTPMHGIISMTDLLLESDLG---AEQRELAAIIGYCGETMLSLINNILDISKIEAGRME 382

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
           L+     L  L++ V    A ++   ++R++V+ D ++ +    D  RL Q+ + ++ N+
Sbjct: 383 LDVVPFELPRLIDSVVAMFAEQLRSKDLRLQVLIDPEVPAQLEGDPVRLAQVLTNLVGNS 442

Query: 699 MDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           + F+ +G   + +  A   GD     F V + G  +  +    +F  F        R   
Sbjct: 443 LKFTPRGQIAIRVHPAAQGGDDLRLRFEVVDTGIGMAPETTGRLFQSFFQADTSTTRKYG 502

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I    + L GG + + S  E  +T    +P K
Sbjct: 503 GTGLGLAISRQLVELMGGQIGVESRLEQGSTFWFVLPLK 541


>gi|310817666|ref|YP_003950024.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390738|gb|ADO68197.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1142

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/700 (16%), Positives = 242/700 (34%), Gaps = 96/700 (13%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDS----LDFLVWHRDQAG-DILWANISYKKNTETEG 230
           +  +   L   +L       +   +        +V     +G   +  N  Y++    + 
Sbjct: 296 ARHSALALDRARLLAEGETQRARLEELVMCAPAVVSVTRGSGHRYVLCNPRYRQLLGGKD 355

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK------SYKIVRVLN 284
           +    A      L  + + + M       + F      +  G          +  V    
Sbjct: 356 LTGMSAREAVPTLDGQGVFEAMDRVYETGEPFISKEFPVRLGPKSDVPSEAFFDFVHQPL 415

Query: 285 S------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
                   G A  A DV+ ++          E+L ++        + R+  F   +   +
Sbjct: 416 RDSEGRVEGIATFAFDVTDQVLARR---TVEELLRDMA-----RSEERFRAFLTATSEII 467

Query: 339 WEIDL--AFLATNPSNDELLEFLRSANKLP------EQLNWKTWKENIFSVYKSSETHKD 390
           W++     F +  P         R               +    +       K+ +  ++
Sbjct: 468 WDMPPRGGFDSDQPGWRAFTGQTREELLGWGWLNAVHPEDRLGTELAWREAVKAGKLFQN 527

Query: 391 TWHLP--NGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLETKYNTLV---KVQGE 438
              L   +G   H+ + + P     G     + +  ++T Q + E +   L+   +    
Sbjct: 528 EVRLRRHDGMYRHMHMRAVPVLELDGTVREWVGIHRDITRQREDEVERARLLSREQRHRA 587

Query: 439 TIDHLSEGVAVFGP----DGRIKLSNPAFRSLWKTEEN-----------RLSPGTHIRNI 483
            +  L+      G     D  + +     R L    ++           +      +   
Sbjct: 588 QLQGLAAASLAIGQAASLDAVLLVITEEARELIGAHQSVTSLTTGEDGAQSISAVSLSEK 647

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLELLSDSVLE--------YSIIP 532
            +    Y   +DGW   A +  +    R +   L+   E  S    E        +  +P
Sbjct: 648 YSQYRGYSPRADGWGFSAQVCRTNQPLRMAQPELEAHPEWRSIGQSEAEHPPPRGWLAVP 707

Query: 533 LPNA--------------QTMLTFVNVTDSVRAERALTEKNEALRKA------DEIKNSF 572
           L  +              +   T  +    V+  R  +   E  R        +  K+ F
Sbjct: 708 LVGSSGSNLGLIQLSDRHEGDFTAEDEAILVQLARMASVAIENARLMAESQAANRAKDEF 767

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+ELR+PLT ++G+T +L+T +     + Q + ++ I  ++  L  L+ D+LD++ 
Sbjct: 768 LAVMSHELRTPLTAVLGWTQMLRTRRNDP--AIQEKGLDVIERNARSLAQLIEDVLDVSR 825

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +  G + L+   + L  ++    + +  +  +  + + + +    G    D  RL Q+F 
Sbjct: 826 ILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTLVMEAGVGGGMVTGDPGRLQQVFW 885

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            +L NA+ F+  G  V ++  R N ++   +K++G  I  +    +F RF        R 
Sbjct: 886 NLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALPHLFERFWQADGSSTRE 945

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
             G+GLGL+IV   + LHGG V   S+     +T   R+P
Sbjct: 946 HGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 985


>gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
           2228]
          Length = 1043

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 9/235 (3%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +    A++ K+ F+ ++S+E+R+P+  I G   L+  +    L+ +Q  Y++ I +S+ 
Sbjct: 307 KQKAELANKAKSEFLANMSHEIRTPINAIKGLIYLILDT---PLSMQQKDYLKKIQSSTV 363

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+NDILD + ++A  + L      L+D+L+++    A K ++  +     +D    
Sbjct: 364 SLSRLINDILDFSKIEAKKLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEFFYDTDHVPQ 423

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDM 734
             V D  RL QI   ++SNA+ F+  G       I+K         F VK+ G  + ++ 
Sbjct: 424 KLVGDSLRLGQILLNLVSNAIKFTETGEVRLIVRIIKKTEQKIKLKFIVKDTGIGMTKEE 483

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            + +F++F        R   G GLGL+I +  +   GG + + S     +T    
Sbjct: 484 QQKLFSQFTQADSSTTRKYGGTGLGLTISQRLVEKMGGEIKVESKPAEGSTFTFT 538


>gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
 gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
          Length = 1045

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 142/377 (37%), Gaps = 13/377 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                  +     ++    I+     V +    G I L N    + +             
Sbjct: 147 EIAKRTKELAVSEELSRTIIEGAPSSVVIIDSQGVILLWNKIAMTTYGYTSEEALGQPLF 206

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +               L      S +D            +   ++  I          
Sbjct: 207 TLLKMALPPKLATVLTLPLQVEQQQSLNDAFFEADTYTRDGTWVPIDLGISIFELNGQCQ 266

Query: 541 TFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             + + D       E+ L E      +A EIK+ F+ ++S+E+R+P+  IIG + L   +
Sbjct: 267 AAMFLRDVTVRKAVEQELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKT 326

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L++KQ  YV  I +S+T+LL ++NDILD + ++AG + +      L+++L+ V   
Sbjct: 327 E---LSAKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIERIEFSLDEVLHNVSMV 383

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
              K  +  + +      ++    + D  R+ Q+   +++NA+ F+ +G   V ++    
Sbjct: 384 TGQKAFDKGLELLFSLPREIPRKLIGDPLRIGQVVINLVNNAVKFTEQGEISVNVQVGER 443

Query: 716 NG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                   F V + G  + E   + +F  F        R   G GLGLSI    + L  G
Sbjct: 444 QTGRIQLQFHVMDTGIGMTEKQTRHLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEG 503

Query: 771 HVSISSSDEGVTTINCR 787
            +S+ S  E  +     
Sbjct: 504 EISVISQPEEGSCFTFT 520


>gi|237793656|ref|YP_002861208.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|229262135|gb|ACQ53168.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 615

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 172/391 (43%), Gaps = 16/391 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + +  N   Q +++ +    + ++ E      I +  + + V    G+I  +N   + + 
Sbjct: 198 VNILANKLDQKEIQKRNMEQLLMKNENCYNLLIRNSKDAILV-HRYGKIIFANERLKQML 256

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA---IITSFDDERKSLQGTLELLSDS 524
             + +       I+++         + +  +L+     I+    +   + + T++  S  
Sbjct: 257 GYKRDYNFEDIDIKSLIPKDQYDTVKDELENLYCGSKNIVKFQHNVINNKEKTIQNTSTY 316

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELR 581
           V+ Y  +P   +  +    +     + E+ + +  E L +    +++   F+ ++S+EL+
Sbjct: 317 VI-YDGMPTIFS-ILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHELK 374

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I     LL   +      KQ +Y++ I  +   L+ L+N++LD   +D+G +KLN
Sbjct: 375 TPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLN 434

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +  L+ E+  S+ +      I I   +D +      D  ++ +I   +LSN++ F
Sbjct: 435 LVNYNIVSLIEEITLSVTSYAESKGINIIFDTDVEEKIIAVDTDKIERIILNLLSNSIKF 494

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           ++ G  + +K      +    VK+ G  IP D  +S+F RF          + G G+GL 
Sbjct: 495 TNPGGHIFVKIKDCGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLH 554

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +V+SF+ +H G V I S     T    ++P+
Sbjct: 555 LVKSFVEMHKGTVHIKSELGQGTEFIIKLPA 585


>gi|226947571|ref|YP_002802662.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841036|gb|ACO83702.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 617

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/389 (22%), Positives = 176/389 (45%), Gaps = 25/389 (6%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSL---------W 467
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L          
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQ 258

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               N        + I       Y           +I   +++RK +   +E +S  ++ 
Sbjct: 259 NLNINSFILKEEQKKIRNKLELVYRNKRDIVCVEQVIQ--NNKRKKIN--VESISTYIIY 314

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +   + +    +T     + ++   E+ +   NE+ R+ +++   F+ ++S+EL++PL 
Sbjct: 315 NNKPAILSILRDITSQKQVEKLQKDVEKNIELLNES-REYNKLITDFLANISHELKTPLN 373

Query: 586 NIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I     +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN   
Sbjct: 374 VIFTAVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVN 433

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + +L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  
Sbjct: 434 CNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGG 493

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  + +       + I SVK+ G  IPED  +++F+RFV      R  + G G+GL +V+
Sbjct: 494 GGNIYVTVKDFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVK 553

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SF+N+H G ++I S     +     IP K
Sbjct: 554 SFVNMHEGTINIQSEIGKGSEFIINIPIK 582


>gi|182412731|ref|YP_001817797.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839945|gb|ACB74197.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 876

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/394 (22%), Positives = 154/394 (39%), Gaps = 47/394 (11%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E ++     + +     RI+ +N  F  L       L        +      +
Sbjct: 221 EALRNLTEAMEQGHSPIMIVDLGLRIEYANAKFCRLLGYSRREL--------LGREWRTF 272

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNA-----QTMLTF 542
           +      ++FA ++T+           +    D     L  +I P+ N        +  F
Sbjct: 273 HGAEARPEIFADMVTTIRAGHPWTGEWMMPRKDGTVFPLRAAITPVKNRAGEIRSFVGVF 332

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T+  + E  L E  E     D  K  F+  +S+E+R+PL  I+GF  LL  ++   L
Sbjct: 333 EDMTEIRQTEALLREAKERAEAGDRAKGQFLATMSHEVRTPLNGIVGFASLLLETE---L 389

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q +YVE I  SS  L+ L  DILD A +++G +KL        + +       AT  
Sbjct: 390 TPEQLEYVETIRTSSETLIQLTGDILDYARIESGRLKLEPQPCDPRECVENALDLAATLA 449

Query: 663 HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR---- 714
               + +   I D    + VAD  RL Q+   +++NA+ F+  G     V + A+     
Sbjct: 450 LPKGVELLHWIDDTVPAAIVADVGRLRQVIVNLVNNAVKFTPTGEVAVDVRVVASSPAPE 509

Query: 715 --------------DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
                         D G+      FSV++ G  I       +F  F        RR  G 
Sbjct: 510 TADAEALPSARETADAGEASCTLEFSVRDTGIGIAPAHHPKIFRPFSQVDDSTTRRYGGT 569

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL+I ++ + L  GH++ +S     +     I
Sbjct: 570 GLGLAICKNLVGLMNGHITFTSELGRGSRFTFTI 603



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 20/155 (12%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +   +++   + L +  E +      I I D    +++ N  F  L       L      
Sbjct: 211 VTTHRQLMQGEALRNLTEAMEQGHSPIMIVDLGLRIEYANAKFCRLLGYSRRELLGR--- 267

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNP-- 408
                    A   PE         ++ +  ++       W +P  +G    +     P  
Sbjct: 268 --EWRTFHGAEARPEIF------ADMVTTIRAGHPWTGEWMMPRKDGTVFPLRAAITPVK 319

Query: 409 -----RGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
                    + +FE++T     E       +    
Sbjct: 320 NRAGEIRSFVGVFEDMTEIRQTEALLREAKERAEA 354


>gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 910

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 144/845 (17%), Positives = 289/845 (34%), Gaps = 120/845 (14%)

Query: 44  LIRQRNSLAKKVNETYSFLSE-------ICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           L RQ   L +++ +     +E       +C   +++  L+ EN    I     D    I+
Sbjct: 76  LERQNEQLRRELEQARGEAAERHRVETALCRSEARFRQLVAEN---LIAIGFGDCAGMIV 132

Query: 97  GQLHQRIDIPQTDTDLLSFEN--W---LKFHHYIKLSKATEKLRKEG--QSFDLVAETQN 149
                 + +   + + L+     W       +  +  +A  +L   G  + ++     ++
Sbjct: 133 EANDAFLQLVGYNREELAAGRVRWAQMTPPEYRERDEQAMAELASTGACRPYEKEYIHKD 192

Query: 150 DCAIKIEGRVS----GSCAFLRILSLDGIYSELAETTLKCKKLS---------------- 189
              + I    +    G      +  L G     A+     ++                  
Sbjct: 193 GRRVPILIGATLLEGGERVACFVFDLGGHRRARADLERANERFQLAAKAAGCLVYDWDLE 252

Query: 190 -NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
            N +     L + L +      +   + WA   +  + E        A+ ++ ++    I
Sbjct: 253 ANRVEHAYGLLELLGYNAEEISEPAHLWWAEQIHPDDRERANAEVWAALQDA-EMPNYAI 311

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
           + R+ +      N C+        + ++ ++V         G  +D+S+   +  ++  T
Sbjct: 312 EYRVRNRQGHHINVCDRGVVRRAPDGRAIRVV---------GCTLDLSESKNLEARVRST 362

Query: 309 YE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSAN 363
            E    +  ++   +     +  L ++NR + +   +                E L    
Sbjct: 363 DEHYRFLAESIPQIVWTARPDGALDYYNRRWYDYTGLTPQQSEGWGWQPVLHPEDLDRCL 422

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           K   Q         I   ++ +      WHL  G+ L +               ++  Q 
Sbjct: 423 KYWRQAVATGSSYEIEYRFRRAGDGAYRWHL--GRALPMRDREGQIVKWFGTSTDIDDQK 480

Query: 424 DLETKYNTLVKVQG----------------ETIDHLSE----------GVAVFGPDGRI- 456
               +     + Q                  T+D +++           V +   DG I 
Sbjct: 481 RAAAELAAREQAQRFLAEAASILASSLDYTVTLDRVAQLTVPLLADWCSVDMVSEDGGIE 540

Query: 457 ------KLSNPAF--RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                   +  A   R L +         + + N+  T    +      +L  AI  S +
Sbjct: 541 KLVIAHVDAQKALQIRELQRRYPFDPREASGVANVLRTGRSEFYPKITDELLIAIARSPE 600

Query: 509 D-------------------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                                 ++      ++SDS   Y    L  A+ +     +    
Sbjct: 601 HLELLRKAGFSAALLVPLTARGRTFGAITLVMSDSGRRYGRTDLALAEDLACHAAIAIDN 660

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                         +A+ IK+ F+  VS+ELR+PL  I+G+T +L+  KL +    Q++ 
Sbjct: 661 ------ARLYHQAWEANRIKDEFLATVSHELRTPLNAILGWTQILRRRKLDA--ESQARA 712

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +      L+ DILD++ +  G +KL+   + L  ++ E   S+       +I +
Sbjct: 713 LETIERNGRAQNQLIEDILDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHIAL 772

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               D +  S   D  RL Q+   +LSNA+ F+ +G  + ++ A D    + SV+++G  
Sbjct: 773 HCTLDAEAASVSGDPARLQQVVWNLLSNAIKFTPEGGRIDVRLAADGASALLSVRDSGVG 832

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC 786
           I  +    +F RF        R   G+GLGL+IV   + LHGG V+  S           
Sbjct: 833 ITPEALPYIFERFRQADGSNTRAFGGLGLGLAIVRHLVELHGGTVTAHSDGPGRGALFAV 892

Query: 787 RIPSK 791
           R+P +
Sbjct: 893 RLPRR 897


>gi|88802612|ref|ZP_01118139.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P]
 gi|88781470|gb|EAR12648.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P]
          Length = 907

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 165/391 (42%), Gaps = 28/391 (7%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPG 477
           +T     + K     +         ++ V  +    G+I      +RS    ++      
Sbjct: 251 ITNLKKNQEKLKQSNERYHLATKATNDAVWDWNLVTGKI------YRSAVGFDKVYGFDK 304

Query: 478 THIRNIAATCSRYYNESDGWD---LFAAIITSFDDERKSLQ-------GTLELLSDSVLE 527
               +  A  + Y +  D      L   II S D    S +       G  + ++D    
Sbjct: 305 KRPIDKKANWNAYIHPDDKNRITKLLEKIIASSDQNNFSFEYGFIGPTGDYKYINDRGFI 364

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                    + +    N+T     +  L    E   +    K+ F+ ++S+E+R+PL  I
Sbjct: 365 VRNEDGKAIRIIGAASNITKREEIKNELILAKEQAEELAGFKDQFLANMSHEIRTPLNGI 424

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGFT +L      +   KQ   +  I  SS ILL +VNDILDL+ ++AG M L  + + L
Sbjct: 425 IGFTKILLR---DNATKKQRHQLNAIKTSSDILLVVVNDILDLSKIEAGKMILEKTNLKL 481

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
            +L+N V  +   ++ E    +    D  +    + D  R+ QI   ++ NA+ F++ G 
Sbjct: 482 PNLVNSVLSTFELRIGEKEQTLNTRFDKNIPKWLIGDTVRINQILLNLIGNALKFTAVGG 541

Query: 707 TVILKA---ARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           T+ +      +D    +   SV + G  IP D  K++F+ F+ ++     +  G GLGL+
Sbjct: 542 TINVHLNLLHQDENKVNVEISVSDTGIGIPSDKIKNIFDPFIQSSDNTARKYGGSGLGLN 601

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           IV+  I+L  G +S+ S +   +T    IP 
Sbjct: 602 IVKQLIDLMHGSISVKSQESIGSTFTLTIPL 632


>gi|88857165|ref|ZP_01131808.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2]
 gi|88820362|gb|EAR30174.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2]
          Length = 781

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 153/375 (40%), Gaps = 14/375 (3%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   +  L++ + +    G I   +     ++      +  G ++  +   
Sbjct: 272 KQLKMTQAEQNAILACLTDAIIICDAKGNILFFSEQATEMFGYSAKEM-IGVNVTKLMIN 330

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFV 543
               ++        A+  +    + + L    +   +  +   I  L N   +       
Sbjct: 331 DHAKHHHDYIKGYQASGTSKVIGKNRDLIAVKKSGDEFPISLVIKELANISKLTFVGIIS 390

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++   + E+ L +   +   A   K++F+ + S+E+R+P+  I G   LL+      L 
Sbjct: 391 DISHIKQREKELQDAKNSAESAALAKSAFLANTSHEIRTPMNGIYGILQLLE---CEPLT 447

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                 ++  + S+  L+ +VNDILD + ++AG + L ++   ++ LL  ++  ++ +  
Sbjct: 448 QNGQNLLKQATYSTQALMTIVNDILDFSKIEAGKLNLEHTHFKVSALLAHLESDMSLQTK 507

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GD 718
           + NI +K+ +      +  D  R+ QI   I+SNA+ F+ +G  VI              
Sbjct: 508 DKNITLKIHNTITHDDWYGDALRIRQILINIISNAIKFTQQGGIVISCYCNQANNASINQ 567

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F + + G  + +     +F RF    +   RR  G GLG+SIV S   L  G +++ S
Sbjct: 568 VTFEITDTGIGMSKMALDKLFERFEQADNSTTRRFGGTGLGMSIVHSLTTLMEGKINVQS 627

Query: 777 SDEGVTTINCRIPSK 791
            +   T     +P K
Sbjct: 628 EEGVGTKFQIMLPLK 642


>gi|309388886|gb|ADO76766.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 521

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 186/480 (38%), Gaps = 37/480 (7%)

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N+   +      + L   P        + S     E    K + + +F+  K  +   +
Sbjct: 31  VNQKMADFCSCQRSDLRGKP--------IASILNSQELKTVKKFNQEVFAEGKRKKAKIE 82

Query: 391 TWHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                  + + V V  +          + + E++T ++  E K     K       +   
Sbjct: 83  LEVESEMRMIEVDVIPHHNVNGEVDYLLCLAEDITEELKQEEKLYRATKRYRSIFKNAPL 142

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENR--------LSPGTHIRNIAATCSRYYNESDGW 497
              V   +  I   N     ++  +++         +        I       +  ++ +
Sbjct: 143 AFVVSDRETNIIDWNDKAEEIFGWKKDEVIGEKFNLIVAADSYSKITDLIVNVFENNESY 202

Query: 498 DLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           ++   I     +        L +  +D +LE   I            ++++ ++ ++ + 
Sbjct: 203 NVHKNIAKDGSELYCEWNTALIKDRNDKILEIISIA----------QDISEKIKIQKRIK 252

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYIS 614
            + E L + ++++  F  ++S+EL++PL  I     +L  K +    L +K  +Y+  I 
Sbjct: 253 NQKEKL-EYNQLRTIFFANISHELKTPLNLIFSSLQILEYKLASEDHLENKFDKYLSSIK 311

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL LVN+++D+  +      L+     +  L+  + +S A  +   N +    S+
Sbjct: 312 NNGFRLLRLVNNLIDITKIGVNTFCLHKGNFDIIKLVKSIVKSTADYLETKNRKFIFQSN 371

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D   L ++   ++SNA+ F+  G  ++LK  +   + + S+K+ G  I ++ 
Sbjct: 372 LESQIIACDPFNLERVILNLISNAVKFTEAGDEILLKIEKIENEIVISIKDTGIGIKKEN 431

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F  F         +R G G+GLS+ +S + +HGG + ++S     +  +  +P ++
Sbjct: 432 QAIIFEEFRQVDQSFNKKREGSGIGLSLAKSIVEMHGGRIELTSEYGVYSKFSIYLPIEK 491



 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNS------FGEAGIAIDVSKEITVNDQL----T 306
           A  K     +        +  ++  + +            +A D+++E+   ++L     
Sbjct: 72  AEGKRKKAKIELEVESEMRMIEVDVIPHHNVNGEVDYLLCLAEDITEELKQEEKLYRATK 131

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
               I  N  +A  + D+   +   N    E++  
Sbjct: 132 RYRSIFKNAPLAFVVSDRETNIIDWNDKAEEIFGW 166


>gi|117924952|ref|YP_865569.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608708|gb|ABK44163.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 837

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/503 (19%), Positives = 201/503 (39%), Gaps = 33/503 (6%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +L+     + +  ++R +   N++  +   +    L   P +  +           +
Sbjct: 34  YQNLLNVGQQGLCLLGRDRLIVHTNKTMADWLRVSPEALYQTPFSQWV-----------D 82

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPN----GQTLHVIVTSNPRGGTI----WMFENL 419
             + +  +     V +   +      +P+    G+++ V+       G +        +L
Sbjct: 83  LNDREKLEAFFIDVDQDGPSAITLNLVPDLGRNGRSVRVMGAGLSDVGGVAGMGLALVDL 142

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGT 478
           + Q  +  + N  +       +   +  + F   GR++  NPA + +        +   T
Sbjct: 143 SDQRAMLQQLNHELTTYRNIANFTHDWESWFDAQGRVQWINPAVQRVTGYSIAACMEMAT 202

Query: 479 HIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +  ++     R   E    +  A A+        K  +G L  +S S+            
Sbjct: 203 YPVDLFHAQDRSTLERLMQEGRAGAVAHDVSLRIKHREGDLRWVSLSLQPMLTNAGEKLG 262

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
              +  ++++   AE+AL     +   A + K+ F+  +S+E+R+P+T I+G  +L+  +
Sbjct: 263 FRTSIRDISERREAEQALEAAKRSAETASKAKSRFLSTMSHEIRTPMTAILGVAELMSGT 322

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+  Q ++V  I  S   LL L++DIL ++  +            ++ LL  V   
Sbjct: 323 H---LDRVQREHVSIIRRSGDALLELIDDILVISQNEGAQEGEKQVVFDVDHLLESVMDM 379

Query: 658 IATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD 715
            + +  E  I+ +  ++       + D  RL Q+   ++ NA+ FS KG  VI ++    
Sbjct: 380 ASYRATEKGIKLLSHVAALVPVRVMGDPVRLRQVLINLVGNAIKFSEKGEVVIQVRPGPR 439

Query: 716 NG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
           NG    D+ FSV +NG  IP +  +++F+ F         +  G GLGL+I    +NL G
Sbjct: 440 NGPERSDYRFSVSDNGIGIPMEKREAIFDAFSQVDETESRRFGGTGLGLTICRRLVNLMG 499

Query: 770 GHVS-ISSSDEGVTTINCRIPSK 791
           G +  + S     +T    IP +
Sbjct: 500 GQLELLFSEPGVGSTFAFDIPLQ 522



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 91/309 (29%), Gaps = 45/309 (14%)

Query: 43  LLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC--------LTIVWDGKDETPE 94
            L+   ++   +  +  +  +E       Y +LL               IV   K     
Sbjct: 5   FLVNSNDTAQSQPADLDTPATEASLYAQCYQNLLNVGQQGLCLLGRDRLIVHTNKT---- 60

Query: 95  IIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA-TEKLRKEGQSFDLVAE---TQND 150
            +    +        T    F  W+  +   KL     +  +    +  L       +N 
Sbjct: 61  -MADWLRVSPEALYQTP---FSQWVDLNDREKLEAFFIDVDQDGPSAITLNLVPDLGRNG 116

Query: 151 CAIKIEGRV---SGSCAF--LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD-SLDF 204
            ++++ G      G  A   L ++ L    + L       ++L++ ++ ++ + + + D+
Sbjct: 117 RSVRVMGAGLSDVGGVAGMGLALVDLSDQRAML-------QQLNHELTTYRNIANFTHDW 169

Query: 205 LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK--NF 262
             W  D  G + W N + ++ T        +       LF  + +  +       +    
Sbjct: 170 ESWF-DAQGRVQWINPAVQRVTGYSIAACMEMATYPVDLFHAQDRSTLERLMQEGRAGAV 228

Query: 263 CETVSTLE---HGNNKSYK------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
              VS       G+ +         +       G      D+S+       L        
Sbjct: 229 AHDVSLRIKHREGDLRWVSLSLQPMLTNAGEKLGFRTSIRDISERREAEQALEAAKRSAE 288

Query: 314 NLTVAIAIF 322
             + A + F
Sbjct: 289 TASKAKSRF 297


>gi|168206570|ref|ZP_02632575.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170661961|gb|EDT14644.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
          Length = 791

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/506 (19%), Positives = 207/506 (40%), Gaps = 41/506 (8%)

Query: 301 VNDQLTHTYEILH-NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           + ++L   Y ++  N + +I ++D  + + + N++  E +            + +L + L
Sbjct: 276 LQNELQVFYHLVEFNTSSSIILYDNKKKVIYTNKTIRERY----------CKSTKLKDQL 325

Query: 360 RSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWM 415
           +   KL     +    ++N      +    +    L NG+ +   +       +      
Sbjct: 326 KEVEKLFVDSIFIDDSEKNATKALFNKGNWEGKLILKNGKIVSAYIQILNVENKNYFAVN 385

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRL 474
            +++T +  L        ++     +++ + +     +G I   N +  ++L  T E  +
Sbjct: 386 LKDITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEII 445

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G  I N+        N+              +DE  S++  L      V   SII   
Sbjct: 446 --GMPIINLLGKNDEILNQLK-----------LEDEEDSIKCKLVGKHSFVYVESIIRTL 492

Query: 535 NA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           N         ++   N+T   R E  L  K +  +  ++I+N F  ++S+ELR+PL  I 
Sbjct: 493 NDNNEIPYGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIY 551

Query: 589 GFTDLL---KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
               LL     +     N+   +Y + +  +   +L L+N+++D++ ++ G +K +++  
Sbjct: 552 STIQLLNSKHETDPMDFNNFYDKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTNR 611

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+  +   +       +I I   ++ +      D  ++ ++   +LSNA+ F+   
Sbjct: 612 DIVFLVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNH 671

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
             + +     N     S+K+NG  IP++M  S+F+RFV        +  G G+GLSIV+S
Sbjct: 672 GEIFVDLNISNDWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKS 731

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              LH G + + S     +     +P
Sbjct: 732 IAELHDGKIELISDGIKGSEFIVWLP 757


>gi|169343152|ref|ZP_02864177.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
 gi|169298790|gb|EDS80865.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
          Length = 791

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/506 (19%), Positives = 207/506 (40%), Gaps = 41/506 (8%)

Query: 301 VNDQLTHTYEILH-NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           + ++L   Y ++  N + +I ++D  + + + N++  E +            + +L + L
Sbjct: 276 LQNELQVFYHLVEFNTSSSIILYDNKKKVIYTNKTIRERY----------CKSTKLKDQL 325

Query: 360 RSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWM 415
           +   KL     +    ++N      +    +    L NG+ +   +       +      
Sbjct: 326 KEVEKLFVDSIFIDDSEKNATKALFNKGNWEGKLILKNGKIVSAYIQILNVENKNYFAVN 385

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRL 474
            +++T +  L        ++     +++ + +     +G I   N +  ++L  T E  +
Sbjct: 386 LKDITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEII 445

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G  I N+        N+              +DE  S++  L      V   SII   
Sbjct: 446 --GMPIINLLGKNDEILNQLK-----------LEDEEDSIKCKLVGKHSFVYVESIIRTL 492

Query: 535 NA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           N         ++   N+T   R E  L  K +  +  ++I+N F  ++S+ELR+PL  I 
Sbjct: 493 NDNNEIPYGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIY 551

Query: 589 GFTDLL---KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
               LL     +     N+   +Y + +  +   +L L+N+++D++ ++ G +K +++  
Sbjct: 552 STIQLLNSKHETDPMDFNNFYDKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTNR 611

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+  +   +       +I I   ++ +      D  ++ ++   +LSNA+ F+   
Sbjct: 612 DIVFLVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNH 671

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
             + +     N     S+K+NG  IP++M  S+F+RFV        +  G G+GLSIV+S
Sbjct: 672 GEIFVDLNISNDWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKS 731

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              LH G + + S     +     +P
Sbjct: 732 IAELHDGKIELISDGIKGSEFIVWLP 757


>gi|87311452|ref|ZP_01093572.1| sensor histidine kinase/response regulator [Blastopirellula marina
           DSM 3645]
 gi|87285864|gb|EAQ77778.1| sensor histidine kinase/response regulator [Blastopirellula marina
           DSM 3645]
          Length = 1006

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 7/344 (2%)

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDER 511
           DGR +L                +   H++ +     R   E     +         +++ 
Sbjct: 209 DGRTRLLLERVSESVAIAVRSANYRAHLQTLLEETQRQSEELQAQSEELRVANEELEEQG 268

Query: 512 KSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            +L+ T   L    + LE +   L   QT        D  R + +L  +   L +A   K
Sbjct: 269 NALKETATRLELQQAELEQTNTQLEE-QTQQLEAQRDDLARTKLSLQHQAADLERASRYK 327

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+ELR+PL + +    LL  +  G+L+ +Q ++ + I ++   LLNL++DILD
Sbjct: 328 SDFLANMSHELRTPLNSSLILAKLLADNPQGNLSEEQVKFAKTIQSAGNDLLNLISDILD 387

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           L+ ++AG M+L    + +  L++EV +++     +  +R +          +  DRQRL 
Sbjct: 388 LSKIEAGQMELRLEQLRVQKLIDEVSRTMQPLARQKELRFETQIAPDCPKIIFTDRQRLE 447

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   +LSNA+ F+ +G   +      N     +V + G  I E+  + VF  F      
Sbjct: 448 QVLKNLLSNAIKFTEQGEVKLSVTPLSNQRLALAVSDTGIGISEEQQQIVFEAFRQADSS 507

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +  G GLGLSI + F  L GG + + S     +T    IP+
Sbjct: 508 SHRKHGGTGLGLSISKEFSRLLGGELRLESKPGDGSTFTLIIPA 551


>gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 1397

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 10/248 (4%)

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              R E AL +   A   A+  K+ F+ ++S+E+R+P+  +IG T LL  +   SL  +Q 
Sbjct: 852  RYRHETALLDARLAAEAANRAKSEFLANMSHEIRTPMNGVIGMTRLLLNT---SLAEEQR 908

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             + +   AS   LL ++NDILD + ++AG ++L   +  L  LL++    +A K  +  +
Sbjct: 909  SFAQTALASGESLLTVINDILDFSKIEAGKLELEEISFDLRLLLDDFAAIMAVKAGDKGL 968

Query: 668  RIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFS 722
                 +       F+ D  R+ QI + +  NA+ F+ KG   V +   R+  +     FS
Sbjct: 969  EFICAALPDVPVRFIGDPDRIRQILTNLAGNAVKFTHKGEVAVYVSLLRETDEEVLVRFS 1028

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            VK+ G  IP +    +F  F         +  G GLGL+I    + L  G + ++S    
Sbjct: 1029 VKDTGIGIPREKLDRLFRSFTQVDASMTRKYGGTGLGLAISRQLVELMSGEIGVNSQSGI 1088

Query: 781  VTTINCRI 788
             +     +
Sbjct: 1089 GSEFWFTL 1096


>gi|269941172|emb|CBI49559.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus TW20]
 gi|302751518|gb|ADL65695.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|329314364|gb|AEB88777.1| Sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728409|gb|EGG64846.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 546

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 189 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 248

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 249 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 295

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 296 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 341

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 342 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 399

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 400 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 458

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 459 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 518

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 519 EAHQGNIEVNSQVGKGSTFKVIL 541



 Score = 40.7 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 200 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 252

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 253 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 310

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 311 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 369

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 370 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 422


>gi|254443566|ref|ZP_05057042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257874|gb|EDY82182.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 730

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/405 (22%), Positives = 169/405 (41%), Gaps = 47/405 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            K +  +K     ++ L  GV V     +G I + N     L++  +N +        I 
Sbjct: 195 KKSDAGLKYLAAAVEMLDIGVYVIDESQNGEISVWNSEMERLFQIGKNEV--------IG 246

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--------- 535
                 +N+     +F  + T F   R          S+ + + S   L           
Sbjct: 247 KQIHELFNDPLVCGVFRDLSTDFSQNRAIFPSKGLSRSNFIADISKTQLHGINGQQSAIV 306

Query: 536 ---AQTMLTFVNVTDSVRAERALTEKNEALRKAD---------------------EIKNS 571
                      +    + A   L    E L +++                     + K+ 
Sbjct: 307 GIIQDVTNRIHSENRLIAAFNELETSKEKLEQSNLEIRKGIEKAKKLAVVAQSSNKAKSY 366

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+ELR+PL +I+  T  L     G LN+KQ + +E +S SS  L +L+NDILDL+
Sbjct: 367 FLSNISHELRTPLNSIVSLTQALLEGTFGDLNAKQHENLEIVSESSKHLQSLINDILDLS 426

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++ G M L ++   + D+     + I  +    N+R  +  + +L +   D +RL QI 
Sbjct: 427 KIELGKMTLKFAQAGIGDIARSSIRMIEQEASLKNVRCILEINTELENIEVDAKRLRQIL 486

Query: 692 SKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-- 747
             +L NA+ F+   + V L+     +N   +F+V ++G  I ++    +F+ F       
Sbjct: 487 LNLLVNAVKFTKSNTDVTLQIEENSENESVVFNVIDHGIGIDQNDFSKIFSPFTQLDDSL 546

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                G GLGL+I   F+ LHGG + ++S+ +  +T    +P ++
Sbjct: 547 SRHYEGTGLGLAIASKFVELHGGGLRVASTPDLGSTFTISLPIEQ 591


>gi|58581946|ref|YP_200962.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426540|gb|AAW75577.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1150

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 129/810 (15%), Positives = 267/810 (32%), Gaps = 116/810 (14%)

Query: 75  LLTENNCLT-IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH--YIKLSKAT 131
           L+  +     ++ D   + P + G           D  LL    W               
Sbjct: 204 LVAADGSTLHVISDHVQDMPSLQGDFPLEAAQGMRDA-LLENRPWFTTDTMTPGAPDYVA 262

Query: 132 EKLRKEGQSFDLVAET-QNDCAIKIEGRVSGS-CAFL----RILSLDGIYS-ELAETTLK 184
           E+ R  G    L     ++   +   G    +   +L     ++ L      E  +    
Sbjct: 263 EQYRHSGLRASLAIPLHKHGRLVAAIGVHQRAPRHWLSTEIELVRLVAARCWESMQRAKA 322

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
            ++L+ + +  + L ++L  +++  D  G   + N  + + T  +    + A        
Sbjct: 323 QQQLAGNEARLRRLANTLPQIIFIADPDGRPHYFNQRWYEYTGLDPSNNEDAAWHRAHTA 382

Query: 245 KE---EIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDV 295
                  +   ++ +       E     + G ++ +  + + V    G      G   D+
Sbjct: 383 DGLRLSAQAWTLALNGKRAFEMECELLRQDGQSRWHLARALPVRGDDGSISEWIGTYTDI 442

Query: 296 SKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAF 345
                   QL         +   +   I + D      + N  + +         +D  +
Sbjct: 443 HDRRAFEQQLRESEVRFRALCETVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQALDQGW 502

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--------PNG 397
                 +D      R  +   + LN +      + V +    ++  W +         +G
Sbjct: 503 WDVMHPDDA----ARVRHAFEQALNQRGEFIAEYRVRRHDGQYR--WCIDTASPHFASDG 556

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-----EGVA--VF 450
           + L          G I    +++ +  +E    +   + G            + +A  V 
Sbjct: 557 RFL----------GHIGSLTDISERKHIEDATASDRAILGLITTGAPLPVVLDAIALSVE 606

Query: 451 GPDGRIKLSNPAFRSLWKT---------------------------EENRLSPGTHIRNI 483
                +   +   R   +                                LS    ++ I
Sbjct: 607 ARSEILLYCSVMVRDEVRHTLSFGSAAHFPIEYRGHFAPSPIGEDGPPCALSAHLGLQVI 666

Query: 484 AATCSRYYNESDGWDLFAAI------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            A      + ++   + AA+      IT   D    + GTL +  D       +P    Q
Sbjct: 667 CADIRADASFANHHAISAAMGIAACCITPILDSNGQVLGTLNIYYDRP----HLPSLREQ 722

Query: 538 TMLTFVNVTDSVRAER------------ALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            M    +    +  ER            A T        A  +K+ F+  +S+ELR+PL 
Sbjct: 723 AMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHASRVKDEFLATLSHELRTPLN 782

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G++ L+++      +    + +  I  S+     +++D+LD++ + +G ++L     
Sbjct: 783 AILGWSRLMQSEMTEPTH--LGRGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQAEHF 840

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSK 704
            +  L+    + +        I +++ +       F  D  RL Q+ + +LSNA+ F+  
Sbjct: 841 DIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFTPV 900

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           G TV +    ++      V++ G  I  D    VF+RF        RR  G+GLGLSI  
Sbjct: 901 GGTVRVAMDIEDERLRLCVQDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISR 960

Query: 763 SFINLHGGHVSISSS-DEGVTTINCRIPSK 791
             ++LHGG +  SS+ +         +P +
Sbjct: 961 QLVDLHGGSLGASSAGEGQGALFTIVLPFQ 990



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 99/309 (32%), Gaps = 41/309 (13%)

Query: 35  LTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE 94
           L+T I ++ L+  R   + +  +    L+    +L +   L      +  + D  D  P 
Sbjct: 299 LSTEIELVRLVAARCWESMQRAKAQQQLAGNEARLRR---LANTLPQIIFIAD-PDGRPH 354

Query: 95  IIGQ-LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND--- 150
              Q  ++   +  ++ +  ++            +   + LR   Q++ L    +     
Sbjct: 355 YFNQRWYEYTGLDPSNNEDAAWHR----------AHTADGLRLSAQAWTLALNGKRAFEM 404

Query: 151 --CAIKIEGRVSGSCAF---LR-----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
               ++ +G+     A    +R     I    G Y+++ +     ++L      F+ L +
Sbjct: 405 ECELLRQDGQSRWHLARALPVRGDDGSISEWIGTYTDIHDRRAFEQQLRESEVRFRALCE 464

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           ++  ++W  D  GD ++ N  +   T                   +  + R     AL +
Sbjct: 465 TVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQALDQGWWDVMHPDDAARVRHAFEQALNQ 524

Query: 261 NF---CETVSTLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQLTHTY 309
                 E       G  +    +   +          G  G   D+S+   + D      
Sbjct: 525 RGEFIAEYRVRRHDGQYRW--CIDTASPHFASDGRFLGHIGSLTDISERKHIEDATASDR 582

Query: 310 EILHNLTVA 318
            IL  +T  
Sbjct: 583 AILGLITTG 591


>gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 1388

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 12/319 (3%)

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            N     +R     +     A  + +  +E +S Q  L+  +D  LE     L   Q    
Sbjct: 779  NTIVANARTDALLEESQRLAGELRARSEELQSRQEDLQRSNDE-LEVKA-DLLAQQNHDI 836

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             V   +  +A + L E+   L  A + K+ F+ ++S+ELR+PL +++    LL  +  G+
Sbjct: 837  EVKNREIEQARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILAGLLARNPKGN 896

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L +KQ +Y   I ++ + LL L+NDILDL+ V+AG M L+   + L  ++++++ +    
Sbjct: 897  LTAKQVEYAHVIHSAGSDLLQLINDILDLSKVEAGKMDLHVEPVALAAVVDDLRATFTPV 956

Query: 662  MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS---TVIL----KAA 713
              E  +R+KV     +    + DR RL QI   +LSNA+ F+ +G    T+ +       
Sbjct: 957  TTEKGLRLKVEIAPDVPGRLLTDRHRLAQILRNLLSNAVKFTEQGRVELTITMMAPASGR 1016

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
                  +F+V + G  I E+    +F  F         +  G GLGLSI      L GG 
Sbjct: 1017 PGGEHVLFAVTDTGIGIAEENLDRIFGAFQQGDGTTSRRYGGTGLGLSICREVATLLGGE 1076

Query: 772  VSISSSDEGVTTINCRIPS 790
            +   S     +T    +P+
Sbjct: 1077 IRARSVYGSGSTFTLDLPT 1095


>gi|170731064|ref|YP_001776497.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
 gi|167965857|gb|ACA12867.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
          Length = 558

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 181/468 (38%), Gaps = 44/468 (9%)

Query: 351 SNDELLEFLRSANKLPE------QLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVI 403
           +N      LR  + + E        +   + +    V  S +  H +   L    ++ V+
Sbjct: 77  TNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARALRRWYSVEVM 136

Query: 404 VTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               P G  +  +F ++T    +E +            D L   V VF   G ++  N A
Sbjct: 137 RVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTA 196

Query: 463 FRSLWKTE-----ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +   +  +         S   H  ++     +            A++ +     +   G 
Sbjct: 197 YGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA-----RRYDG- 250

Query: 518 LELLSDSVLEYSIIPL--PNAQTMLTFVNVTD-SVRAERAL---------TEKNEALRKA 565
                   +E S  P   P+   +    N  D + R E  L                   
Sbjct: 251 ----QWRWIEMSATPRYSPDGHFIGLTGNSPDVTERLEIELVREQLLKSERAARNEAENM 306

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNL 623
             +K+ F+  +S+ELR+PLT I+G+++LL       +  +   Y  +  I++S+ +   L
Sbjct: 307 ARLKDEFLSTLSHELRTPLTTILGWSELLLQR----IEEQHPCYKGLSVIASSAKVQKRL 362

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LDL+++  G M+L    + L + + EV       +     R+ + +       + D
Sbjct: 363 ISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGD 422

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QIF  +LSNA+ F+     + ++   D   F  SV ++G  I  +    +F+RF 
Sbjct: 423 ATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAEFLPHLFSRFR 482

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
                  R   G+GLGL+IV+S + +HGG+V  +S            +
Sbjct: 483 QADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 530



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G     N S+ ++   + +V +   G       E IK+    + + ++   E  +    
Sbjct: 71  DGIFRLTNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARAL--- 127

Query: 272 GNNKSY--KIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD 323
              + Y  +++RV    G     + +D+++   +  +L  +    + L   +     +FD
Sbjct: 128 --RRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFD 185

Query: 324 QNRYLQFHNRSFVELWEIDLA-------FLATNPSNDELLEF-LRSANKLPEQLNWKTWK 375
               ++F N ++ E + +DL+        +  +P +  + EF L +A K    L      
Sbjct: 186 AQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA 245

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                 ++  E      + P+G  + +   S           ++T ++++E     L+K 
Sbjct: 246 RRYDGQWRWIEMSATPRYSPDGHFIGLTGNSP----------DVTERLEIELVREQLLKS 295

Query: 436 QGET 439
           +   
Sbjct: 296 ERAA 299



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 18/153 (11%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGI 231
           ++ E     ++L+     F +L D L   VW  D  G + + N +Y        +     
Sbjct: 152 DITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTVP 211

Query: 232 VFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
            +   +     L F+ ++   + + SAL             G  +  ++          +
Sbjct: 212 EWSMVLHPEDVLIFEFKLSAALKTQSALRALVRARRY---DGQWRWIEMSATPRYSPDGH 268

Query: 285 SFGEAGIAIDVSKE---ITVNDQLTHTYEILHN 314
             G  G + DV++      V +QL  +     N
Sbjct: 269 FIGLTGNSPDVTERLEIELVREQLLKSERAARN 301


>gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 413

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 138/302 (45%), Gaps = 14/302 (4%)

Query: 500 FAAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAER 553
            A  + SF   R  ++ G +   S+   EY + P+     M +              +  
Sbjct: 112 IAVWMASFLTRRITAVVGGIHRFSEQETEYRL-PVQGHDEMASLAISFNQMADRIGESFV 170

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  +   +A  +K+ F+ ++S+ELR+PL  IIGF++L++       + +  +  + I
Sbjct: 171 RLDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEAA---DDETRENADII 227

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             SS  LL LVN ILD+A ++AG M L    + L  L+ E      +      I +   +
Sbjct: 228 EKSSRHLLELVNSILDIAKIEAGAMTLAVQDVKLAPLVAEAASVHHSAAQAKGITLSSQV 287

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           SD    +  AD  RL QI   +LSNA+ F+ KG  V L    + G  IF V + G+ IPE
Sbjct: 288 SDNCPETIRADPLRLRQIIHNLLSNAVKFTEKGE-VSLSVELEPGHLIFRVSDTGAGIPE 346

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            M  ++F +F            G GLGL++    + L GG + + S+    T  +  +P 
Sbjct: 347 GMLHAIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGTIGVQSTVGKGTVFHFTLPL 406

Query: 791 KE 792
            +
Sbjct: 407 HQ 408


>gi|317152082|ref|YP_004120130.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942333|gb|ADU61384.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 643

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 168/427 (39%), Gaps = 53/427 (12%)

Query: 416 FENLTVQVDLETK--------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           F  ++ +++   K             +      ++  EG+    PDG ++ +NPA   ++
Sbjct: 216 FRRMSAEIEAREKKLQAMNKTLQEAEEKYRGIFENAIEGILQATPDGVLRRANPAMARIF 275

Query: 468 KT--------------------------EENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
                                          ++     I+   A   R   ++    L A
Sbjct: 276 GYDSLDEFLSNVRSLGSRIMVNPDRMQDFYKQVRERGEIKRFEAEYYRRDGKTIWGSLNA 335

Query: 502 AIITSFDDERKSLQGTLELLSDSVL-EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             I S   E   ++G LE ++D    E  +  L      L      D V   R L E N+
Sbjct: 336 RAIYSDSGEIIFIEGILEDITDRKKAEQDLADLNRHLEQLVRERTEDLVNKARELEEANQ 395

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-------------KLGSLNSKQS 607
            LR+ DE+K++F+  VS+ELR+PLT+I+GF  LL                 L     +  
Sbjct: 396 RLRELDEMKSAFLSSVSHELRTPLTSILGFAKLLHKEFTRNYLPLAQNEPLLVKKGQRIQ 455

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-N 666
             +  IS     L  L+ND+LDL  +++G M      + ++D++    QS+     +N  
Sbjct: 456 NNLLIISHEGERLTRLINDVLDLNKIESGSMGWRDERLNMSDIVETAVQSVTGLFSQNPQ 515

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +    D  L   +AD  R+ Q+   +L+NA  F+  GS V ++A    G     + + 
Sbjct: 516 VGLVSEIDPALPVVIADPDRMQQVLINLLNNAAKFTDDGS-VTVRAFPRFGQVRVEIADT 574

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I  +    +F +F          + +G GLGL+I    +  + G + + S     +T
Sbjct: 575 GVGIHPEDQNRIFEKFHQTKTATMGDKPKGTGLGLTICREIVEHYSGRIWVESEPGKGST 634

Query: 784 INCRIPS 790
               +PS
Sbjct: 635 FIFTLPS 641



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 26/223 (11%)

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEI------TVNDQLTHTYEILHNLTVAIAIFDQN 325
           G  +  +++ +   F      I+  ++       T+ +       I  N    I     +
Sbjct: 202 GEVRHTELIEIATRFRRMSAEIEAREKKLQAMNKTLQEAEEKYRGIFENAIEGILQATPD 261

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLPEQLNWKTWKENIFSVYK 383
             L+  N +   ++  D        S DE L  +RS  +  +      + + + +    +
Sbjct: 262 GVLRRANPAMARIFGYD--------SLDEFLSNVRSLGSRIMVNPDRMQDFYKQVRERGE 313

Query: 384 SSETHKDTWHLPNGQTLHVIVTS----NPRGGTIW---MFENLTVQVDLETKYNTLVKVQ 436
                 + ++  +G+T+   + +    +  G  I+   + E++T +   E     L +  
Sbjct: 314 IKRFEAE-YYRRDGKTIWGSLNARAIYSDSGEIIFIEGILEDITDRKKAEQDLADLNRHL 372

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            + +   +E +        ++ +N   R L + +   LS  +H
Sbjct: 373 EQLVRERTEDLV--NKARELEEANQRLRELDEMKSAFLSSVSH 413


>gi|317486463|ref|ZP_07945288.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316922266|gb|EFV43527.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 781

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/503 (18%), Positives = 191/503 (37%), Gaps = 42/503 (8%)

Query: 311 ILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           IL      + + D  N  L + NR+ ++++ +    L +         F       P   
Sbjct: 6   ILEEYDDMVYVSDLNNYELLYVNRAGLDMFHLSREELFSGKKYLCYEIFHGRNTPCPFCT 65

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           N        +     +E    T+ L + + L      + R   I    +++     + K 
Sbjct: 66  NNYLKDSGFYEWEHYNEQLGKTYLLKDRKVLW-----DGRESRIEFVFDVS---KYKNKL 117

Query: 430 NTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +   K Q   +  L  G+A      +  I      F S+    E +         + + C
Sbjct: 118 DKQGKQQAAMLRSLPGGIARLDARDERTILWYGSEFLSIIGYTEEQFK-----EELQSQC 172

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSL-QGTLELLSDSVLEYSI-------------IPL 533
              Y E D     AA+  + +  R S+ QG +   S  +   +I             IP 
Sbjct: 173 LYVYPE-DMEQAEAAMHEAKETGRSSIMQGRIVTRSGKIRHLTITFSYMDGKDSEDGIPS 231

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             +  +     V      ++AL +     + A++ K  F+  +S+++R+P+  I+G T +
Sbjct: 232 YYSLGIDVTETVERQRLQQQALEDACRVAKHANQGKTEFLSRMSHDIRTPMNAIVGMTAI 291

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                      K    ++ I+ SS  LLNL+N++LD++ +++G + +  +   L++L+  
Sbjct: 292 --AGAHIEDTQKVRDCLKKINTSSKHLLNLINEVLDMSKIESGRLDVRANDFSLSNLVQN 349

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V +     + E    + +            D  RL Q+   ILSNA+ ++  G  +    
Sbjct: 350 VFEVCRPMIIEKGHHLTMNISKVRHEGLYGDESRLQQVLVNILSNAVKYTPAGGRLHFSI 409

Query: 713 ARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESF 764
                       F F+ ++NG  + E+    +F  F         + +G GLG++I ++ 
Sbjct: 410 EEKPTHAEGASVFYFTFEDNGIGMSEEFVGRIFEPFSRAEDSRISKIQGTGLGMAISQNI 469

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           I++  G +++ S+    +     
Sbjct: 470 IHMMNGEITVDSTLGKGSRFTVS 492


>gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
 gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
          Length = 1338

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 121/249 (48%), Gaps = 5/249 (2%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                +  + +  +  + E L++ D+IK+ F  +VS+ELR+PLT IIG  + +  S   + 
Sbjct: 801  QRTFELAQQKEEIASQAEKLKEMDQIKSHFFSNVSHELRTPLTLIIGPAEQILHSAESTT 860

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                S+ +    +++  LL L+N +LD + +++G + L   T   +  L  +  S     
Sbjct: 861  TQSHSKSI---LSNAQRLLKLINQLLDFSKLESGKLILQLKTGKFHVFLKNIIYSFELLA 917

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++ NI +K++   +      D  +L ++F  +LSNA+ F+ +   V ++  +        
Sbjct: 918  NQKNIGLKLLLHQEEIMGEFDHDKLEKVFFNLLSNALKFTPENGLVTIEVKQKEEMVQIK 977

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  IP      +F+RF            G G+GLS+V+  + LHGG++  SS  + 
Sbjct: 978  VSDTGIGIPPQSLPFIFDRFYQVDGSQTRTHEGTGIGLSLVKELLELHGGNIKASSEVDK 1037

Query: 781  VTTINCRIP 789
             TT   ++P
Sbjct: 1038 GTTFFIQLP 1046


>gi|119716160|ref|YP_923125.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536821|gb|ABL81438.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 920

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 127/718 (17%), Positives = 263/718 (36%), Gaps = 60/718 (8%)

Query: 113 LSFENWLKFHHYIKLSKATEKLRKEGQ-SFDLVAETQNDCAIKIEGRVSGSCAFLRILSL 171
           L F+  L     +  +     L  +G   F     T      +++ R  GS + L ++  
Sbjct: 221 LRFDLRLAAWELVGFAVLVTFLTAQGYGPFGDHYRTG-----ELDARSMGSLSQLYLMCT 275

Query: 172 DGIYSELAETTLKCKKLSNHISV-----FKVLFDSLDFLVWHRDQA--GDILWANISYKK 224
             +   LA    + ++L + ++       +   +SL  +V  R      +I+  N +  +
Sbjct: 276 ALLCLPLAIAVGQRRRLLDRLTSSERLFRRNFTESLIGMVLMRSGDTPLEIVDVNEAAAR 335

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
                G    + +    +L        +I++  L  +     +     + +  ++   ++
Sbjct: 336 IVGRTGSPVGRDLA---ELLDTTEPLELIAAQMLAGDLDGWRAQTGLRDRRGSRVNVAVS 392

Query: 285 ------SFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRS 334
                     +    DV+ E     +L    +     L      I + D    +   N +
Sbjct: 393 LLTNDPEPTFSAQLQDVTAEYDARRRLEAAEKLTSATLDTTAAMILVTDLMGVVVRVNGA 452

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANK---LPEQLNWKTWKENIFSVYKSSETHKDT 391
              L   D   L      D       S      LP+    +  +E    V +S +  +  
Sbjct: 453 TTTLTGFDEDELVGVAVWDLPFAPPGSDGYPAGLPDTPEGQVGRETDV-VTRSGQRRRIQ 511

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           W+   G               +    +LT++         L++        ++  +    
Sbjct: 512 WN--TGYVHDDRDRPT---HIVLTGTDLTMERMTAGLNRHLLEA------AITTALIGID 560

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFD-- 508
             GRI + NP   +L   +         +        +   + + G + FA ++   D  
Sbjct: 561 TQGRITVFNPGAVNLLGYDGQDTVGTPFVDLFDPEQLAERLSGATGEEAFARLVAGIDSG 620

Query: 509 --------------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                           R ++  +L + +D+                   +    V A   
Sbjct: 621 ADTGTRDWTWIGADGRRHTVSMSLSVAADTFAARVGYLCAGRDVTEARASQEMLVAALEK 680

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                E LR+ D  K+ FV  VS+ELR+P+ +I+G+T+LL+   +     +Q   +E I+
Sbjct: 681 ERLAVERLRQLDVAKSEFVSTVSHELRTPVASIVGYTELLEDGTVVDPAPEQRPMLESIA 740

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   L+ L +D+L L+ +D+G     + T+ L  LL   +++I  ++   ++ + ++++
Sbjct: 741 RNGQRLILLCDDLLTLSGLDSGATAWQHDTLDLATLLPPAEEAIRPQLTGRDLELSMLAE 800

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                 + DR +L +    +L NA+ F+  G  +  +  R + +   S+ + G  IP + 
Sbjct: 801 PAPVLVLGDRVQLERALINLLGNAVKFTEDGGRIECRVGRQDDEAWLSISDTGLGIPVEE 860

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F RF  ++       +G GLGLSIV + +  HGG + + S+    TT   R+P 
Sbjct: 861 QNGLFQRFFRSSTAQAHAIQGTGLGLSIVAATVAAHGGRIDVDSAHLQGTTFTVRLPL 918


>gi|241764934|ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
 gi|241365496|gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
          Length = 1425

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/507 (17%), Positives = 192/507 (37%), Gaps = 34/507 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      +  ++   I   D +  ++F N  +  +    +         D +
Sbjct: 341 EAQQETARREQELSVLFKSVQELIFRTDPHGRIRFVNARWHTITHQPVETARGKHLRDIV 400

Query: 356 LEFLR---SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--QTLHVIVTSNPR- 409
               R    A   PE                     +     P+G  + L + V      
Sbjct: 401 HPESRACVDALFAPEPP-------------TGVRMAQVQLTGPDGGPRALDISVVPLRDP 447

Query: 410 ----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G      ++T  +  + +    +    + ++     + +  P+GR    N A+  
Sbjct: 448 TGQLRGFAGSAVDVTPLLTAQQRLQEQLAFTSQVLECNPLPICMTDPEGRFLSVNQAWED 507

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                   +    +   +A   +R Y+ S+   L       +++  +   G+        
Sbjct: 508 FMGVPRASVLGLRNSDFLAPQEARTYDASNDQLLREGSRVRYEERVRRPDGSF-----RD 562

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           ++ + +P+         + +      E       +   +A   K+ FV ++S+ELR+PL 
Sbjct: 563 VQVTKVPVFTNNRQPVGILIVKMDITE--FLAARDLAEEASRSKSEFVANISHELRTPLQ 620

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I+GF++L      G  + K +     I A+   +L LVND+LD+A +++ +   ++  I
Sbjct: 621 SILGFSEL--GMLRGRQHEKLAAMFSDIHAAGQRMLVLVNDLLDIAKIESTVGAFHFERI 678

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            + DL+++V   +   +    + +++           D  R  Q+   +L+NA+ FS KG
Sbjct: 679 DVRDLIDDVAAEMELLLGRKRLDLRLALGRAPLIAKVDPSRFQQVVRNVLANAVKFSPKG 738

Query: 706 STVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVES 763
           S + + A+  D+      V + G  IP    ++VF  FV ++       G GLGL+I   
Sbjct: 739 SAIDISASTPDDDFIHIQVCDQGPGIPPSELEAVFEAFVQSSQTRDGSGGTGLGLAICRK 798

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            I  HGG ++ ++   G    +  +P+
Sbjct: 799 IITAHGGRINATNVPGGGAMFHIVLPT 825



 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 7/241 (2%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            ALT+     ++A++ K+ F+  +S+ELR+PLT+I GF +L++      L  +QS  +   
Sbjct: 1175 ALTQSEAEAQRANQAKSEFLAAMSHELRTPLTSIRGFAELMELRSKDPLIQEQSALI--- 1231

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VI 672
               +  L  L+ +ILDLA ++AG M  +   +VL+DL++EV +         ++ +   +
Sbjct: 1232 RQGAEHLNALLTEILDLARIEAGAMPAHPEPVVLHDLVHEVSELFRVSAVAKSLALTAAV 1291

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIP 731
            SD    + V DR +L QI S +LSNA+ F+  G   + + A  D     F V + G  IP
Sbjct: 1292 SDAAPQTLVTDRLKLKQILSNLLSNAIKFTPAGRVEIFVDACPDGSQVHFHVNDTGPGIP 1351

Query: 732  EDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +   +F +F     R   Q  G GLGLS+  +   L GG +++ S+    +T    +P
Sbjct: 1352 ASLHGVIFEKFSQGHARISYQHGGTGLGLSLSRALAELLGGTLTVRSAVGEGSTFTLSLP 1411

Query: 790  S 790
             
Sbjct: 1412 L 1412



 Score = 46.5 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/296 (9%), Positives = 76/296 (25%), Gaps = 20/296 (6%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
             +        ++           R R +  +  NE     +    +L    S+L ++  
Sbjct: 306 GPLLFMSVALALIGFMTYASWRSARAREAAERGRNEAQQETARREQEL----SVLFKSVQ 361

Query: 82  LTIVWDGKDETPEII-GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
             I           +  + H     P          + +       +          G  
Sbjct: 362 ELIFRTDPHGRIRFVNARWHTITHQPVETARGKHLRDIVHPESRACVDALFAPEPPTGVR 421

Query: 141 FD-LVAETQND--CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
              +     +    A+ I           ++    G   ++       ++L   ++    
Sbjct: 422 MAQVQLTGPDGGPRALDISVVPLRD-PTGQLRGFAGSAVDVTPLLTAQQRLQEQLAFTSQ 480

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           + +     +   D  G  L  N +++                   L  +E +    S+  
Sbjct: 481 VLECNPLPICMTDPEGRFLSVNQAWEDFMGVPRASVLGLRNSDF-LAPQEARTYDASNDQ 539

Query: 258 LEKNFC----ETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVND 303
           L +       E       G+ +  ++ +V          G   + +D+++ +   D
Sbjct: 540 LLREGSRVRYEERVRRPDGSFRDVQVTKVPVFTNNRQPVGILIVKMDITEFLAARD 595


>gi|170738618|ref|YP_001767273.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168192892|gb|ACA14839.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 764

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/500 (21%), Positives = 195/500 (39%), Gaps = 52/500 (10%)

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKL----------PEQLNWKTWKENIFSVYKSSETH 388
           W+I    +  + S  +LL + R    L          P+  +         +   ++  H
Sbjct: 246 WDIARGRIYWSDSMYQLLGYTREHEFLSFGDVNALVHPDDTDLYGLASQ-LAAQDATVDH 304

Query: 389 KDTWHLPNGQTLHV-----IVTSNPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETID 441
           +       G+ + +     IV     GG   + +  +++ Q  L     T      + ++
Sbjct: 305 EFRIRSAAGEWIWLKARAEIVRDQEDGGRHLVGIAIDISEQRRLAESTATADMRLRDAVE 364

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYYNESDGWDL 499
            +SE   ++    R+ L N  FR L         PG     I   A       E    + 
Sbjct: 365 AVSEAFVLWDAQNRLVLCNSKFRRLHALTPEDAQPGRRYDTIMGRAAVPPVRREIQAGEF 424

Query: 500 FAAIITSFD-----------DERKSLQG----------TLELLSDSVLE------YSIIP 532
                 +F+            ER++  G           L+   + ++E       +I  
Sbjct: 425 AETGARTFEAELADGRWLQISERRTKDGGYVSVGTDITALKRHQERLVESERQLIATIAD 484

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L  ++  L       +  AER L ++      A+  K+ F+ ++S+ELR+PL  I+GF +
Sbjct: 485 LKRSRRTLELQTQQLADLAERYL-DQKAQAESANRSKSEFLANMSHELRTPLNAILGFAE 543

Query: 593 LLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +++    G L   K  +Y   I +S   LL++++DILD++ ++A  + L    + + ++L
Sbjct: 544 VMQDEVFGHLGCEKYREYCRDIRSSGQYLLSVIDDILDMSRIEARRVTLAKQPLPVAEVL 603

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             V + +A       + + V  +      +AD + L QI   +L NA+ F+     V ++
Sbjct: 604 ERVLKVVAEAARAKGLTLSVEMNAD-AVVLADARALHQILLNLLQNAVKFTPDAGRVAVR 662

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
             R        V+++G  IP  +   +   F           +G GLGL+I  S   LHG
Sbjct: 663 TRRALDAVHIYVEDSGIGIPRTVLPKLGAPFEQVESNLSRSFKGSGLGLAIARSLTELHG 722

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + I S     T +  R+P
Sbjct: 723 GRLRIRSEVGSGTIVLVRLP 742


>gi|134045508|ref|YP_001096994.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132663133|gb|ABO34779.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 614

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 123/241 (51%), Gaps = 4/241 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    + L++ D +K+  +  VS+ELR+PLT+I G+ DLLK    G LN KQ +++  I
Sbjct: 376 ELKNSYDELKEVDNLKSELLSIVSHELRTPLTSIRGYVDLLKDETAGKLNDKQHEFILII 435

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S +S  L  L++++LDL  V+  ++   ++ + + + + E+  S+       NI +  + 
Sbjct: 436 SENSDRLKRLIDNMLDLVKVENEVLDFKFNKLNIKNTVGEIISSLKYFADSKNIIL--LE 493

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D        D+ ++ Q+ + ++ NA+ FS   + V +    D  +    + + G  IP++
Sbjct: 494 DVDEVYIKGDKSKINQVLANLIENAIKFSKNQTKVTVIGFEDKENLHLEITDQGPGIPKE 553

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +F +F       +R   G GLGL++ +  +  HGG + + S     T+++  +P  
Sbjct: 554 NLEKIFEKFYQIDSSSKREIGGSGLGLAVCKKIVESHGGSIWVESKVGKGTSVHILLPIA 613

Query: 792 E 792
           +
Sbjct: 614 K 614


>gi|67923164|ref|ZP_00516653.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67855006|gb|EAM50276.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 445

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 5/274 (1%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYE 579
           SD +     I           + +      ER   +  +N+ L+ +   K+ +  HVS+E
Sbjct: 163 SDRIFNCEEIDSLETIIDQIAIAIQQIKYQERIKKIELENKQLKSSKNNKSDYFSHVSHE 222

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+ L  I+G + +LK    G LN KQ +YV  I  S   LL LVND LDL+ ++A   +
Sbjct: 223 LRTTLAGILGLSKMLKQELYGPLNEKQKEYVNGIRVSGEHLLALVNDFLDLSKIEADKEE 282

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    + + D+       I  K  E NI I +    ++     D++++ QI   ++SNA+
Sbjct: 283 LFLENVTVEDICLATISIIQPKADEQNIDIILKVSEQVDFCTVDQRKIKQILINLMSNAI 342

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
            F+ +GS V L+  + +    F V + G  I E+  K +F  F         Q +G GLG
Sbjct: 343 KFTEEGS-VTLQVEKVDNWLKFCVIDTGIGIKEEDQKKLFQPFQQIHSKLSRQHKGTGLG 401

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L++      LH G ++++S     +     +P K
Sbjct: 402 LALSRKLAQLHEGELTLTSEYGKGSCFTLELPLK 435


>gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 832

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 146/351 (41%), Gaps = 28/351 (7%)

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A       +   L  G    N      + ++      +   ++T+++     L+G     
Sbjct: 44  AMVQEKHYDLMLLDLGLPGMNGFEVLKQLHDHPLERPIPVIVLTAWNSTTDKLRG----F 99

Query: 522 SDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
               ++Y   P   A+        + T        +  R L     A   A   K  F+ 
Sbjct: 100 ELGAVDYLTKPFEAAELRARLCAALRTKHLQDQLTQTNRELEAARVAAETAARAKAEFLA 159

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  +I  T LL  +   +LN++Q  YVE I +SS  LL ++NDILD + ++
Sbjct: 160 NMSHEIRTPMNGVIAMTGLLLET---NLNNEQRSYVETIHSSSESLLTIINDILDFSKIE 216

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           +G ++L +    L   + E    +ATK  E  + +    D  +      D  RL Q+   
Sbjct: 217 SGKLELEHRPFNLRMGVEEALDLLATKAAEKKLDLAYQMDDDIPSHVHGDVTRLRQVLVN 276

Query: 694 ILSNAMDFSSKGST---VILKAARDNG--------DFIFSVKNNGSSIPEDMCKSVFNRF 742
           +LSN + F+++G     V + +A               F+V++ G  I       +F  F
Sbjct: 277 LLSNGIKFTNEGEVFVHVKIHSASPEPTADDATRLQLHFTVRDTGIGIHPTQIDRLFKSF 336

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   R   G GLGL+I +  + L GG + + S+ +  +T +  IP +
Sbjct: 337 SQADASTTRQYGGTGLGLAISKRLVELMGGKMWVESTLQRGSTFHFLIPFR 387


>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1349

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 10/244 (4%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L    E    A   K  F+ ++S+E+R+P+  +IG T LL  ++   L ++Q  Y   +
Sbjct: 769  ELNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTE---LTTEQRDYAGTV 825

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S   LL L+NDILD + V+AG + +  S   L   + EV + +A K+    + + +  
Sbjct: 826  RRSGESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQY 885

Query: 674  D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----IFSVKNNGS 728
              G    FV D  R+ Q+ + ++ NA+ F+ +GS VI        +       ++ + G 
Sbjct: 886  PVGAPRHFVGDAGRIRQVVTNLVGNAIKFTGEGSIVIEVVCESQDEARAVMRVAIHDTGP 945

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             IP +   S+F +F        R   G GLGL+I +  ++L GG +++SS     +T + 
Sbjct: 946  GIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGSMAVSSRLGEGSTFSF 1005

Query: 787  RIPS 790
             +P 
Sbjct: 1006 TLPL 1009


>gi|294848713|ref|ZP_06789459.1| two-component system [Staphylococcus aureus A9754]
 gi|294824739|gb|EFG41162.1| two-component system [Staphylococcus aureus A9754]
          Length = 554

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 180/413 (43%), Gaps = 52/413 (12%)

Query: 394 LPNGQTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGE----TIDHLSEG 446
           L NG   H+ V+ +    T  +F    +L  ++    K N   K+Q      TI+++   
Sbjct: 171 LANG-YYHIRVSESNVVETKALFVSTNDLARRLQ---KLNNEQKIQSNRLKTTIENIPSA 226

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           + +   +G+I ++N A+   +    N    G H                  ++   I+ S
Sbjct: 227 ILMIDRNGKIVVANKAYYEQFNISHNIEQVGYH-------------GYVNTEIEQLILES 273

Query: 507 FDDER---KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT------E 557
           F  E+   + L+  +  +     + S +P+                R++++L        
Sbjct: 274 FKVEKPIYEQLEVAINQVHAKYFDISCVPI--------------LTRSQKSLQGILVVMH 319

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
               L++ + ++  FV +VS+EL++P+T+I GF + L         S    ++  I   S
Sbjct: 320 DITNLKQLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAES-LDMFLNIILKES 378

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             + +LV D+LDL+ ++    +L+   + L+DL   +  ++ T+ ++ NI I    +  +
Sbjct: 379 NRIESLVTDLLDLSHIEQHT-ELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDV 437

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               A   ++ Q+ + +L+NA+++S +   + ++  RD+   IF V++ G  I  +  + 
Sbjct: 438 I-VKAQESKIAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKLEDQQR 496

Query: 738 VFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F RF            G GLGLSI +  +  H G++ ++S     +T    +
Sbjct: 497 IFERFYRVDKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
 gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
          Length = 1346

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 125/234 (53%), Gaps = 13/234 (5%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+E+R+P+  +IGF DLL  +    L  +Q Q+V+ I +S T LL++++DIL
Sbjct: 819  KSKFLANMSHEIRTPMNGVIGFADLLSDT---DLTPEQQQFVDAIQSSGTTLLSIIDDIL 875

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            + + ++AG  +L  + I +   + E    +A K+ E  I +  + D  + S +  DR RL
Sbjct: 876  NFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTRL 935

Query: 688  LQIFSKILSNAMDFSSKGST-VILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFN 740
             QI   +LSNA+ F+ +G   + ++ A          +  FSV++ G  IP++    +F 
Sbjct: 936  HQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGMYELHFSVRDTGIGIPKEKRDRLFE 995

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             F  V  +   +  G GLGLSI +      GG + + S+    +T +  I ++E
Sbjct: 996  SFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGSTFHFTIEAEE 1049


>gi|52548497|gb|AAU82346.1| signal transduction histidine kinase [uncultured archaeon
           GZfos17A3]
          Length = 424

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 20/309 (6%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           ++T F  E  ++Q   E   D + +  +       T+   +      RAE       E L
Sbjct: 106 MVTGFGSEEIAVQSIHEGAIDYIPKDHLTKDRLLSTIKITLETWKRKRAEDEKRRLMEEL 165

Query: 563 RKAD-----------------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              +                  +K  F+   S+ELR+PLT +     +L+   +G L+ K
Sbjct: 166 ETKNAELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKLDKK 225

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q + +E +  + T L NL+ DILD++ ++AG +KL+++++ LND + E  +         
Sbjct: 226 QEKSIEVVLRNLTRLENLIGDILDISRIEAGRIKLSFNSMNLNDAVKEAIKMQEAFAKGK 285

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI I+     ++ + + D +RL Q    +L+NA+ FS K   VI++  R   +  FS+ +
Sbjct: 286 NIEIRAKL-AEMPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIETKRLGKNVRFSITD 344

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +   K +F  F        R   G GLGL+I +  I  H G +   S     +T
Sbjct: 345 YGIGISKTDQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKGST 404

Query: 784 INCRIPSKE 792
               IP+K+
Sbjct: 405 FYFVIPTKQ 413


>gi|57650563|ref|YP_186576.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221797|ref|YP_001332619.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509906|ref|YP_001575565.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142558|ref|ZP_03567051.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258451794|ref|ZP_05699816.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948]
 gi|262048662|ref|ZP_06021545.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus D30]
 gi|262052263|ref|ZP_06024468.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus 930918-3]
 gi|282920232|ref|ZP_06327957.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A9765]
 gi|284024740|ref|ZP_06379138.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus 132]
 gi|304380717|ref|ZP_07363386.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284749|gb|AAW36843.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus COL]
 gi|150374597|dbj|BAF67857.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368715|gb|ABX29686.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860506|gb|EEV83332.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948]
 gi|259159864|gb|EEW44903.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus 930918-3]
 gi|259163309|gb|EEW47868.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus D30]
 gi|282594580|gb|EFB99565.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A9765]
 gi|304340716|gb|EFM06647.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198611|gb|EFU28939.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140429|gb|EFW32283.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143968|gb|EFW35737.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 554

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 40.7 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|255307672|ref|ZP_05351843.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
 gi|306520996|ref|ZP_07407343.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 441

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 24/365 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L       +  +S G+     +G I L N   + + K+E N+L  G +I  +  
Sbjct: 80  EVQYKHLQ--LRSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK 137

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                  E +        I S D+E       +    D V +  + P+    T    +  
Sbjct: 138 -------EEEILKQILQFIGSKDNE----TANITTKDDIVYKIKVDPVYLQNTNNVIIGS 186

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             ++              K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++
Sbjct: 187 IVNIE-------DITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR 239

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            ++++E I + S  L  L++DIL L+ V+     L    +V+ D+  EV +       E 
Sbjct: 240 -NRFLEIIESESDRLKRLIDDILLLSFVE-NKDTLLMENVVVYDVFKEVYEITQHSASEK 297

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI +    D K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +
Sbjct: 298 NIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVID 357

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP++  + +F RF        R   G GLGL+I +  +    G + + S     + 
Sbjct: 358 NGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSE 417

Query: 784 INCRI 788
               I
Sbjct: 418 FIVTI 422



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V  +      IL +++  I   D N  +   N    E+ + +   L    + + +   
Sbjct: 79  EEVQYKHLQLRSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVV--- 135

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           ++    L + L +   K+N  +   + +   D  +      +++  T+N   G+I   E+
Sbjct: 136 IKEEEILKQILQFIGSKDNETANITTKD---DIVYKIKVDPVYLQNTNNVIIGSIVNIED 192

Query: 419 LTVQVDLE 426
           +T +V LE
Sbjct: 193 ITKKVKLE 200


>gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1917

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/406 (22%), Positives = 173/406 (42%), Gaps = 31/406 (7%)

Query: 403  IVTSNPRGGTIW--MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +  +NP    +   +FE  +T  ++L   +    ++     D L+E +A+      I  S
Sbjct: 1096 LGEANPLNAVVLPVLFEGQVTAVIEL-ASFRRFSEIHLTFFDQLTESIAIVL--NTIAAS 1152

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                  L +++       T    +  T  R   ++        ++    +E +     LE
Sbjct: 1153 MRTEELLKQSQSLAEELQTQQSELRETNKRLEQQAQSLKASEDLLRGQQEELQQTNAELE 1212

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              ++         L   Q         +  +A R+L EK E L  +   K+ F+ ++S+E
Sbjct: 1213 EKAE---------LLAIQKKEVERKNREIEQARRSLEEKAEQLALSSRYKSEFLANMSHE 1263

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            LR+PL +++    LL  +  G+L +KQ +Y + I ++   LL L+NDILDLA +++G M 
Sbjct: 1264 LRTPLNSLLILAKLLTDNVDGNLTAKQVEYSQTIYSAGNELLALINDILDLAKIESGTMS 1323

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
            ++ + I L++L  ++++          +   V    +L  +   D +RL Q+   +LSNA
Sbjct: 1324 IHATPIPLSELAEQIERGFGQVAQNKGLTFAVELAPELPTTVNTDIKRLQQVLKNLLSNA 1383

Query: 699  MDFSSKGST-VILKAARDN------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
              F+ +G   + ++ A+                  F+V + G  I  D  K +F  F   
Sbjct: 1384 FKFTERGEVRLKIEVAKPGWNSNQQPLNSAQNVIAFAVSDTGIGIAADKQKIIFEAFQQA 1443

Query: 746  A--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +  G GLGLSI     +L GG + ++S     +T    +P
Sbjct: 1444 DGTTSRKYGGTGLGLSISREIAHLLGGEIKLTSYPGQGSTFTFYLP 1489


>gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 2198

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 164/392 (41%), Gaps = 29/392 (7%)

Query: 415  MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +FE  +T  ++L   +    ++     D L+E +A+      I  S      L +++   
Sbjct: 1386 LFEGQVTAVIEL-ASFRRFSEIHLTFFDQLTESIAIVL--NTIAASMRTEELLKQSQSLA 1442

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                T    +  T  R   ++        ++    +E +     LE  ++         L
Sbjct: 1443 EELQTQQNELRETNKRLEQQAQSLKTSEDLLKGQQEELQQTNAELEEKAE---------L 1493

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               Q         +  +A  +L +K E L  + + K+ F+ ++S+ELR+PL +++    L
Sbjct: 1494 LAMQKKEVERKNREIEQARMSLEDKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKL 1553

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L  +   +L +KQ +Y + I ++ T LL L+NDILDLA +++G M ++ + + L +L  +
Sbjct: 1554 LADNIDNNLTTKQVEYSQTIYSAGTDLLALINDILDLAKIESGTMSIDMTQMPLVELGEQ 1613

Query: 654  VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
            ++++         +   +     L  +   D +RL Q+   +LSNA  F+ +G   +   
Sbjct: 1614 IERTFRQVAQSKGLAFTIEFTPDLPTTIYTDIKRLQQVLKNLLSNAFKFTEQGEVRLQIA 1673

Query: 710  ----------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
                      +   R      FSV + G  I  D  K +F  F        RR  G GLG
Sbjct: 1674 VAKQGWSNDQVTLNRAQNVIAFSVSDTGIGIAPDKQKVIFEAFQQADGSTSRRYGGTGLG 1733

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LSI      L GG + ++S     +T     P
Sbjct: 1734 LSISREIARLFGGEIKLTSQPGQGSTFTFFFP 1765


>gi|325926364|ref|ZP_08187693.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
 gi|325543243|gb|EGD14677.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
          Length = 1084

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 140/896 (15%), Positives = 284/896 (31%), Gaps = 136/896 (15%)

Query: 9   GIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK------VNETYSFL 62
                +E+       +   G   G L   +      + ++     +      + +    +
Sbjct: 52  AAAMALELERWSCSPVLQTGEQVGALYIGVADSTADVSEQRRSDSRDSFLLMLEDALQHV 111

Query: 63  SEICDQLSKYHSLLTENNCL------TIVWDGKD---------ETPEIIGQLHQRIDIPQ 107
           S+    +     LL E+          +  DG           + P + G          
Sbjct: 112 SDPRQIIDTSVRLLGEHLQANRCAFGLVAADGSTMHVISDHVQDMPSLQGDFPLEAAQGL 171

Query: 108 TDTDLLSFENWLKFHH--YIKLSKATEKLRKEGQSFDLVAET-QNDCAIKIEGRVSGS-- 162
            D  LL+   W               E+ R+ G    L     ++D  +   G    +  
Sbjct: 172 RDA-LLANRPWFTTDAMAPGAPDYVAEQYRRSGLRASLAIPLHKHDRLVAAIGVHQRAPR 230

Query: 163 ---CAFLRILSLDGIYS-ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
               A + ++ L      E  +     ++L+ + +  + L D+L  +++  D  G   + 
Sbjct: 231 RWLSAEIELVRLVVARCWESMQRAKAQQQLAANEARLRRLADTLPQIIFIADPDGRPHYF 290

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKE---EIKKRMISSSALEKNFCETVSTLEHGNNK 275
           N  + + T  +    + A               +   ++         E       G ++
Sbjct: 291 NQRWYEYTGLDPSSNEDAAWHRAHTADGLRLSEQAWSLALKGQRALEVECELLRHDGQSR 350

Query: 276 SYKIVR--VLNSFGEA----GIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQN 325
            + +    V    G      G   D+        QL         +   +   I + D  
Sbjct: 351 WHLVRALPVRGDDGSISEWIGTYTDIHDRRAFEQQLRESEVRFRALCETVPAMIWMADAQ 410

Query: 326 RYLQFHNRSFVELWE------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
               + N  +           +D  +      +D      R  +   + L  +      +
Sbjct: 411 GDCVYWNPRWYNFTGQGEDQALDQGWWDVMHPDDA----ARVRHAFEQALEQRGEFLAEY 466

Query: 380 SVYKSSETHKDTWHL--------PNGQTLHVIVTSNPRGGTIWMFENLT-----VQVDLE 426
            V +    ++  W +         +G+ L          G I    +++           
Sbjct: 467 RVRRHDGQYR--WCIDTASPHFASDGRFL----------GHIGSLTDISERKHIEDATAS 514

Query: 427 TKYNTLVKVQGETIDHLSEGVAV-FGPDGRIKL-----------------SNPAFRSLWK 468
            +    +   G  +  + + +A+     G I L                 S P F   ++
Sbjct: 515 DRAILSLITTGAPLPVVLDAIALSVEARGEIPLYCSVMVRDEVRHTLSFGSAPHFPIEYR 574

Query: 469 TEENRLSPG-----------------THIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
                   G                        A+ S ++  S    + A  +T      
Sbjct: 575 GHFEPSPIGPDGPPCALSAHLGRQVICSDLQADASFSSHHAISATMGIAACCVTPILASN 634

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER------------ALTEKN 559
             + GTL +  D       +P    Q M    +    +  ER            A T   
Sbjct: 635 GQVLGTLNIYYDRP----HLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAAR 690

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N    + +  I  S+  
Sbjct: 691 AQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPAN--MGRGLVIIERSARA 748

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LG 678
              +++D+LD++ + +G ++L      +  L+  V + +        I +++ +      
Sbjct: 749 QTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPTALARKIALELDAPCDGEL 808

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++ G  I  D    V
Sbjct: 809 WFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQDTGIGIAADFLPHV 868

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
           F+RF        RR  G+GLGLSI    ++LHGG +  SS+ +         +P +
Sbjct: 869 FDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLPFQ 924


>gi|87160006|ref|YP_494333.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195499|ref|YP_500303.1| histidine kinase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87125980|gb|ABD20494.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203057|gb|ABD30867.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase domain
           protein [Staphylococcus aureus subsp. aureus NCTC 8325]
          Length = 553

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 196 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 255

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 256 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 302

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 303 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 348

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 349 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 406

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 407 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 465

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 466 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 525

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 526 EAHQGNIEVNSQVGKGSTFKVIL 548



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 207 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 259

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 260 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 317

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 318 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 376

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 377 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 429


>gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
 gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
          Length = 1296

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/522 (17%), Positives = 183/522 (35%), Gaps = 31/522 (5%)

Query: 287  GEAGIAIDVSKEITVNDQLTHTYEILHNLTV-AIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            GE    +  S+E                +    +A  D+     +          +  A 
Sbjct: 778  GETARLLHASEERARLAIRVGRLGTWRFVPTSGVATMDERMREIWGEPEDTFQLSLAQAM 837

Query: 346  LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
               +P++ E +     A   P   +  T + +   V+ +     + W   NGQ       
Sbjct: 838  ERIHPADRERVSQAVDAALDP--ASAGTLEIDYRIVWPNG---SERWVSANGQVFFEQTE 892

Query: 406  SNPRGGT--IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
            +  R     I    ++T +  +E       +      + + + V      G +   N  +
Sbjct: 893  AGSRRAVDFIGTALDITERKRIEQALAGSEQRYRLLAESIPQLVWTADVGGTLLDVNGRW 952

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
                     ++        +               + A      +   +   GT      
Sbjct: 953  SQYTGFTLEQVKKSGWESVVHPEDVPGLRRQWTAAIKAVAAYRAEGRMRRTDGTY----- 1007

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEAL-----------RKADEIKNS 571
                +  +PL + +  +     T +   ER  L  + E L             A+  K+ 
Sbjct: 1008 RWHLHQAMPLMDGEGRILKWFGTATDIEERKQLEAEREQLLERAEQAREAAEAANRTKDE 1067

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+  + +ELR+PL  IIG+T +L+  K+G    K  Q +E I  ++ +   L++D+LD++
Sbjct: 1068 FLAILGHELRTPLNPIIGWTQMLRRGKVGP--DKHDQALEIIERNARLQTQLIDDLLDVS 1125

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
             +  G +++    I L  ++    +++     +  +++            AD  RL Q+ 
Sbjct: 1126 RIMRGSLRIAPQPITLAAIVVCALEAVRGLAEQKQVQLFEQLRTTAP-LSADPTRLQQVV 1184

Query: 692  SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
              +L+NA+ F+  G  V ++     G    ++ + G  IP +    +F RF     +  R
Sbjct: 1185 WNLLTNAVKFTPAGGQVQVRLESGGGMARLTISDTGVGIPAEFLPHLFERFRQADTKSTR 1244

Query: 752  R--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
               G+GLGL IV   +  HGG V   S  +         +P 
Sbjct: 1245 EQKGLGLGLFIVRHIVEAHGGTVQAESEGEGKGAAFTVVLPL 1286



 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 7/244 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQ 608
           RA  A   + EAL + D  K  F  +VS+E R+PL+ ++G  + +L    + +   +Q  
Sbjct: 354 RAYEAECRRAEALAEIDRAKTVFFSNVSHEFRTPLSLLLGPLEDVLAGDGISAPTREQ-- 411

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +     +   LL LVN +LD + ++AG ++ N+    L  L  ++     + + +  +R
Sbjct: 412 -LTLAQRNGRRLLKLVNTLLDFSRIEAGRIQANFLPTDLASLTAQLVSVFRSAVEKAGLR 470

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + +       +   DR    +I   +LSNA  F+ +G  + ++  +  G+    +++ G 
Sbjct: 471 LVIDCPPLAEAVYVDRDMWEKIVLNLLSNAFKFTLRG-QIAVRLRQQTGEVCLELEDTGV 529

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I       +F+RF   A        G G+GL++V   + +HGG VS+ S     +T   
Sbjct: 530 GIAAHELPRIFDRFHRVAGVAGRSHEGSGIGLALVAELVEIHGGKVSVQSVSGRGSTFTV 589

Query: 787 RIPS 790
           R+P+
Sbjct: 590 RLPT 593



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 92/287 (32%), Gaps = 31/287 (10%)

Query: 48   RNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVW-----DGKDETPEIIGQLHQR 102
            R     +++      + +    S+  + L         W      G     E + ++   
Sbjct: 766  RVKANLELSRLRGETARL-LHASEERARLAIRVGRLGTWRFVPTSGVATMDERMREIWGE 824

Query: 103  IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ------NDCAIKIE 156
             +     +   + E  +      ++S+A +       +  L  + +      ++  +   
Sbjct: 825  PEDTFQLSLAQAMER-IHPADRERVSQAVDAALDPASAGTLEIDYRIVWPNGSERWVSAN 883

Query: 157  GRV------SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
            G+V      +GS    R +   G   ++ E     + L+     +++L +S+  LVW  D
Sbjct: 884  GQVFFEQTEAGSR---RAVDFIGTALDITERKRIEQALAGSEQRYRLLAESIPQLVWTAD 940

Query: 211  QAGDILWANISYKKNTETEGIVFQKAIGES---RKLFKEEIKKRMISSSALEKNFCETVS 267
              G +L  N  + + T       +K+  ES    +      ++   +  A+     E   
Sbjct: 941  VGGTLLDVNGRWSQYTGFTLEQVKKSGWESVVHPEDVPGLRRQWTAAIKAVAAYRAEGRM 1000

Query: 268  TLEHGNNKSYKIVRVLNSFGEA------GIAIDVSKEITVNDQLTHT 308
                G  + +    +    GE       G A D+ +   +  +    
Sbjct: 1001 RRTDGTYRWHLHQAMPLMDGEGRILKWFGTATDIEERKQLEAEREQL 1047


>gi|332703162|ref|ZP_08423250.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553311|gb|EGJ50355.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 657

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 154/398 (38%), Gaps = 43/398 (10%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS-------------LW 467
            +   E   +   +     I +    +     D  ++  NPA                L 
Sbjct: 125 ERKRAERILHQREQEYKALIKNAPNIIVRLNKDLLVQFVNPAIEPAMGHPPAYYIGKPLH 184

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           +    +   G +   +    SR   +S  +D  A     +   R   + + +   ++VL 
Sbjct: 185 EACFPQELSGKYEEVVKGVFSRGKEDSLVFDCIAQNQRRYYHARFVPEFSAKGEIETVLS 244

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                            +T     E  L +  +   +A++ K++F+  +S+E+R+P+  +
Sbjct: 245 I-------------LNEITALKVTEEELRQAKDLAEEANQAKSAFLAAMSHEIRTPMNGV 291

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  +L    +     SK  QY++    S   LL ++NDILDL+ ++AG++ +       
Sbjct: 292 LGMIELALMRR---PTSKVKQYLDLAKQSGQALLLIINDILDLSKIEAGMITIEEQPFNP 348

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS 706
             +L  +  +++    +  +  +      L S  + D  RL Q+   I+ NA+ F+ +G 
Sbjct: 349 RAMLESLFATMSLAAEQKGLEFRSNVASALSSMALGDEGRLRQVLFNIIGNAIKFTEQGE 408

Query: 707 T-VILKAARDN---------GDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRG 753
             V +   R           G F    S+++ G  IP  M + +F+ F     R  +  G
Sbjct: 409 IAVSIDVPRGEKWRDICGAKGSFCLLASIRDTGVGIPAHMLEKIFDSFTQVNGRNYEFGG 468

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+I    + + GG + + S     +     +P +
Sbjct: 469 TGLGLAISRQLVEMMGGKIWVESEPGKGSLFTFVVPLE 506


>gi|262173448|ref|ZP_06041125.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
 gi|261890806|gb|EEY36793.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
          Length = 1586

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/396 (25%), Positives = 167/396 (42%), Gaps = 33/396 (8%)

Query: 419  LTVQVDLETKYNTLVKVQGE--------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            LT  V    ++N  ++ Q E         ++   E   +  P+G IK+ N     ++   
Sbjct: 687  LTSMVKQREEWNLQLQNQKEKEVLRFKALLESSPEATLIVDPNGIIKMVNEEAEKVFGYG 746

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
             + L      R           +   W+         +   +S +      ++  +E S 
Sbjct: 747  RDELEGYPMHRLFPHDLESARAKHAQWNELRPGNQRIEIAVRSDE------TEFPVEISS 800

Query: 531  IPLPNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
              +     +   ++  N+TD +  E+ L +      +A + K+ F+ + S+E+R+PL  I
Sbjct: 801  SSVQMDDGLLISVSIRNITDRLAFEQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAI 860

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            +G T LL      SL   Q + V+ I  S   LL +VND+LDL+ ++A  M L    + L
Sbjct: 861  LGLTHLLSDE---SLTESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDL 917

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             + L EV    +T+    N+  K+     L    +AD  RL QI + +LSNA+ F+S G 
Sbjct: 918  REFLEEVASVFSTQAEAKNLDFKLEMGVDLPHWVIADSMRLRQILTNLLSNALKFTSVGH 977

Query: 707  TVILKAA---------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
             + L+A           +     FS+ + G  I E+  K +F  F        RR  G G
Sbjct: 978  -IALRAEIIDKFIWKGAEKNIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTG 1036

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            LGLSIV     L  G + + S +   +T    +P +
Sbjct: 1037 LGLSIVHKLSGLMEGKIGVESREGQGSTFWTEMPLQ 1072


>gi|257059466|ref|YP_003137354.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
 gi|256589632|gb|ACV00519.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
          Length = 442

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E + + +   Q  +T   +    R  + L  +N+ L K  + K+ ++ H+++ELR+PLT 
Sbjct: 173 EINTLEMIVNQIAITIHQIQLEERL-KDLESENQRLHKTSQNKSDYLSHINHELRTPLTG 231

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF  +L+    G LN KQ QY+  I+ S   LL LVND LDL+ ++A   ++   TI 
Sbjct: 232 ILGFAKMLREELYGPLNEKQKQYINGIAVSGEHLLALVNDFLDLSKIEAEREEIFLETIA 291

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + D+       + +K  E  I + +     +     D++R+ QI   +LSNA+ F+ KGS
Sbjct: 292 VEDICLSAISIVDSKAKEQGINLIIEIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS 351

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESF 764
            V L    D     F + + G  I +D  K +F  F    +    + +G GLGL++    
Sbjct: 352 -VTLAVKSDREMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKL 410

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
             LHGG ++++S     +     IP K
Sbjct: 411 AQLHGGDLTLTSEMGKGSCFTLHIPIK 437


>gi|317152332|ref|YP_004120380.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942583|gb|ADU61634.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 765

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 16/251 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+   E    ADE K+ F+  +S+E+R+P+  ++G  +LL  +   SLN  Q +YV    
Sbjct: 365 LSRAREMAESADEAKSQFLARMSHEIRTPMNAMLGAGELLAET---SLNGDQRRYVSIYQ 421

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++   L  LV D+LDL+  ++G  +L  +   L   +++       +     + ++   D
Sbjct: 422 SAGEHLRELVRDVLDLSRFESGRFRLEETPFSLRSAIDKACAVFTLEARNKGLDLRCCVD 481

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG----DFIFSVKN 725
                  V D   L Q+   +L N++ F+ +G        + A  +         F+V++
Sbjct: 482 PDTPDRLVGDPTALRQVLVNLLGNSIKFTPQGSVSLGVRSVGAGHEADGQTCTLEFTVQD 541

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT- 782
            G  IP D  + +F RF        R   G GLGLSI  + +   GG +++ S     T 
Sbjct: 542 TGIGIPVDKQEVIFERFSQADGSTSRKYGGTGLGLSICRNLVTFMGGSIAVDSQPGEGTT 601

Query: 783 -TINCRIPSKE 792
            T   R+P  +
Sbjct: 602 LTFTVRLPLDQ 612


>gi|255004059|ref|ZP_05278860.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Virginia]
          Length = 442

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 143/313 (45%), Gaps = 21/313 (6%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           + DG  +F  +I ++    ++L+G   +L        +IP+  A      + V    R+ 
Sbjct: 129 QDDGPKVFLQVIKNYGKLSQALRGVHGML--------VIPVGVAILSCVCLVVLFYRRSA 180

Query: 553 R----------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           R           L E+ E   +    K+ F+ +VS+ELR+PL +IIGF++++++  LG +
Sbjct: 181 RLLSSQYDANLELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPI 240

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + +  +Y+  I  S   LL+L+NDILD +  +A  + + +    L  +++     +  +
Sbjct: 241 GSEEYKEYINDIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPR 300

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  + +K     +    +AD +R+ Q+   +LSN++ F+ +G  V L A       I 
Sbjct: 301 AKDAKVELKKEMPEEPIVMLADPKRMKQVIINVLSNSVKFTPEGGLVKLCAEIRGEQLIV 360

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + + G  I +     V + F      H  +  G GLGL + +  + L  G  SI S   
Sbjct: 361 EISDTGIGIAQQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPN 420

Query: 780 GVTTINCRIPSKE 792
             T +    P K+
Sbjct: 421 LGTIVTLTFPHKQ 433


>gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1]
 gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 535

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 135/284 (47%), Gaps = 13/284 (4%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL-------RKADEIKN 570
            EL+   V+ + + P+   +      +  + +   R   + +E L        +A E K+
Sbjct: 108 FELIDLEVMHFILKPIDIERFEKVLADAVEIILKRRQYRQMHEDLARSKKLAEEATEQKS 167

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+PL  I GF  LL+ ++    +  + +Y++ +  SS  LL ++NDILD+
Sbjct: 168 RFLANMSHEIRTPLNAITGFIKLLEENEK---DETKLKYLKIVENSSESLLQIINDILDI 224

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + +++G + +        + L  + +   T+  E NI  ++  +  +   +  D  R+ Q
Sbjct: 225 SKIESGNLMIEPYNFNPYEDLIMIAELFQTRAAEKNIIFQIRYNNNMPKILFGDALRIKQ 284

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           IF+ +LSNA+ F+ +GS V       NG     VK+ G  I E   K++F  F+      
Sbjct: 285 IFTNLLSNAIKFTPEGSVVKCIIWYKNGQLNIRVKDYGIGISEKKQKAIFEPFMQADSST 344

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                G GLGLSI      + GG +++ S  E  +     IP +
Sbjct: 345 VRNYGGTGLGLSISLELTRMLGGTLTLKSEKEKGSIFTLSIPLE 388


>gi|119490557|ref|ZP_01622999.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453885|gb|EAW35041.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1056

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 169/392 (43%), Gaps = 33/392 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPG 477
           +T +     +     +       +    + +    D      N +F  L       +   
Sbjct: 442 VTER---TQELQQSQQKFSIAFQNTPNPIIINRMSDHSYFDVNESFCQLTGYTHEEILGK 498

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPN 535
           T +        + Y +     +    + +++   ++  G +   LLS  ++E +      
Sbjct: 499 TSLDLNLWVNLKDYEQFYQTLITEGKLRNYEFNYRTKSGKIRTALLSADLIEIN----SE 554

Query: 536 AQTMLTFVNVTDSVRAERALTEKN-------EALRKADEIKNSFVQHVSYELRSPLTNII 588
              + +  ++T+  + E  L  +N       +    A++ K++F+ ++S+ELR+PL  I+
Sbjct: 555 QYLLSSSNDITERKQVENQLQTQNIELEIARKNADAANQAKSTFLANMSHELRTPLNAIL 614

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+ L+  + +    SK+   +E I+ S   LL+L+NDILDL+ ++ G + L        
Sbjct: 615 GFSQLMAQNPIFVSASKE---LEIINRSGEHLLSLINDILDLSKIEVGKVVLEEKPFDFY 671

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            LL+ +++ +  + +   I++    D        D  +L Q+   ++ NA+ F+++GS +
Sbjct: 672 ILLDTLEEMLKMRANAKGIQLISERDQIPQYIKTDENKLRQVLINLIGNAIKFTNQGS-I 730

Query: 709 ILKAARDNGDF-----------IFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGL 756
            L+    + D             F V++ G+ I  +    +F+ FV  +A +  ++G GL
Sbjct: 731 TLRVDSHSPDVNSLTPNSPVQLFFEVEDTGAGISTEEIDQLFDAFVQTSAGKQSQQGTGL 790

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI   F+ L GG +S+ S     +     I
Sbjct: 791 GLSISRKFVQLMGGKISVKSQLGKGSLFQFNI 822


>gi|320166405|gb|EFW43304.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864]
          Length = 1498

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/389 (22%), Positives = 160/389 (41%), Gaps = 36/389 (9%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              ++    +    + +AVF     +  S+  F+ L  +  +  +  +   N AAT    
Sbjct: 261 QQHQILEAILQSSGDALAVFNATSDVLCSSTKFQQLVGSASHPGALISDSVN-AATTDGQ 319

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----------------VLEYSIIPLP 534
                   L      S    ++++    E  SD                  L      LP
Sbjct: 320 EAPIFPSPLDLLEPESHRQVQRAITSMFEAGSDYNTADLDLCKVKSEEALPLHVRSTLLP 379

Query: 535 ------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                 +   +  F ++    R E AL E + +    +E K+ F+ ++S+E+R  L+ I+
Sbjct: 380 PLKAGSSGLMLAMFDDLAPKNRLESALLEAHRSKHA-NESKSRFLANMSHEIRVWLSGIL 438

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL+ ++   L  +Q +++  I  S+ ILL ++NDILD + ++AG + +      + 
Sbjct: 439 GMIHLLEGTQ---LTEEQHEFLGTIKMSAQILLTVINDILDFSKIEAGQLTIERVEFDIF 495

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
           + +  V + +       N+ ++   D ++ +  + D  RL QI   +LSNA+ F+ KG  
Sbjct: 496 NTIEMVVELLYPSAGNKNLLLQCFIDPRIPTKVLGDPSRLQQILVNLLSNAIKFTKKG-R 554

Query: 708 VILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
           V LK   +N        +F V + G  +  D    +F RF        R   G GLGL I
Sbjct: 555 VFLKCTLENETLENATVLFEVHDTGIGLTPDTLARLFRRFSQEDASTTRKFGGTGLGLVI 614

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +S + L GG +   S     +    R+P
Sbjct: 615 SKSLVELMGGSIGADSVSGKGSRFWFRLP 643


>gi|163739230|ref|ZP_02146642.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
 gi|161387630|gb|EDQ11987.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
          Length = 759

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 9/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E AL E  +A   A+  K+ F+ ++S+E+R+P+  +IG  +L+  +    L+  Q
Sbjct: 218 ERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET---DLDEDQ 274

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y E IS S + LL ++NDIL+ + ++AG M+L  +   L   + +V   ++ K  E N
Sbjct: 275 TMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKN 334

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFS 722
           + + +  D  L      D  R+ QI + +  NA+ F+ KG   + +    D+       S
Sbjct: 335 VEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTALRIS 394

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G+ IPED    +FN F            G GLGL+I    + L GG +S+ S    
Sbjct: 395 VTDTGAGIPEDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGK 454

Query: 781 VTTINCRIPSK 791
            +     +P +
Sbjct: 455 GSVFAIDLPLR 465


>gi|119946606|ref|YP_944286.1| fused histidine kinase sensor/response regulator [Psychromonas
           ingrahamii 37]
 gi|119865210|gb|ABM04687.1| fused histidine kinase sensor and response regulator containing
           ATPase domain [Psychromonas ingrahamii 37]
          Length = 1121

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 123/256 (48%), Gaps = 6/256 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +QT           +   AL    E    A+E K+ ++  +S+ELR+PL  ++G+  LL 
Sbjct: 638 SQTNALAKESNAHEQTSSALQVAKEVAEAANEAKSRYLAGLSHELRTPLNVLLGYAQLLS 697

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +L  KQ + +  +  +   L +L+  +L+++ ++AG + L      L  +L ++ 
Sbjct: 698 RDP--ALPFKQREIIGIVKRNGEHLADLIEGLLEISKIEAGRVNLQRDEFNLKAILQQLV 755

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                +  +  ++   ++   L  +VA D+QRL QI   ++SNA+ ++ +GS V  K   
Sbjct: 756 DMFQMQASKKRLKFYYLASPNLPDYVATDKQRLRQILINLISNAIKYTEQGS-VTFKVTY 814

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +    FSV + G  I +   + +F  F    N H     G GLGL+I  S   L GG +
Sbjct: 815 RSEVAHFSVIDTGPGISKSNQELIFKPFEQIRNDHTKAISGTGLGLTISRSLAELMGGEI 874

Query: 773 SISSSDEGVTTINCRI 788
           S++SS    +T N R+
Sbjct: 875 SLTSSIGQGSTFNFRL 890


>gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
 gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
          Length = 1346

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 125/234 (53%), Gaps = 13/234 (5%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+E+R+P+  +IGF DLL  +    L  +Q Q+V+ I +S T LL++++DIL
Sbjct: 819  KSKFLANMSHEIRTPMNGVIGFADLLSDT---DLTPEQQQFVDAIQSSGTTLLSIIDDIL 875

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
            + + ++AG  +L  + I +   + E    +A K+ E  I +  + D  + S +  DR RL
Sbjct: 876  NFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTRL 935

Query: 688  LQIFSKILSNAMDFSSKGST-VILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFN 740
             QI   +LSNA+ F+ +G   + ++ A          +  FSV++ G  IP++    +F 
Sbjct: 936  HQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGTYELHFSVRDTGIGIPKEKRDRLFE 995

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             F  V  +   +  G GLGLSI +      GG + + S+    +T +  I ++E
Sbjct: 996  SFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGSTFHFTIEAEE 1049


>gi|147668883|ref|YP_001213701.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|146269831|gb|ABQ16823.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 581

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 150/376 (39%), Gaps = 26/376 (6%)

Query: 416 FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +T ++    K  +  +      ++ + +G+ +   +G I L N A   ++K E   +
Sbjct: 230 FRLMTERLRDSIKAVSSERDHLSAVLERMGDGIFLLDREGSINLLNHASERIFKLEAGGV 289

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  I         + +   +F    +S   E   ++ T        L     PL 
Sbjct: 290 IGHSFVEAI--------RDHEINAVFERAKSSGKQEMGFVELT---AGKRFLGIIATPLV 338

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +    L              L +    LR+ ++++  FV ++S+ELR+P+T++   T+ L
Sbjct: 339 SQSGYLV-------------LVQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETL 385

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +       +   + +++ I      L  LV ++ DL+ +++G   LN     +   +   
Sbjct: 386 QEGAASDPDV-AAGFIDKIHLEVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLA 444

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + ++ +     I + V     L     D  R+ Q+   ++ NA+ F+ KG  + +    
Sbjct: 445 AERLSPQAERAGIILGVELPETLPQVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGVRT 504

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +   +  V ++G  IPED    VF RF          G GLGL+I +  +  HGG +  
Sbjct: 505 QSQTLVVYVTDSGIGIPEDDLTRVFERFYKVDKSRSGGGTGLGLAISKHIVQAHGGSIWA 564

Query: 775 SSSDEGVTTINCRIPS 790
            S      T +  +P 
Sbjct: 565 ESVYGKGATFSFSLPL 580



 Score = 41.5 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 30/169 (17%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V+ +  H   +L  +   I + D+   +   N +   +++++   +  +      +E 
Sbjct: 242 KAVSSERDHLSAVLERMGDGIFLLDREGSINLLNHASERIFKLEAGGVIGH----SFVEA 297

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSN-PRGGTIWM 415
           +R                 +F   KSS   +  +       + L +I T    + G + +
Sbjct: 298 IRDHEI-----------NAVFERAKSSGKQEMGFVELTAGKRFLGIIATPLVSQSGYLVL 346

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPD 453
            ++L+    LE            +  T +       + L EG A   PD
Sbjct: 347 VQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEG-AASDPD 394


>gi|282927822|ref|ZP_06335433.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A10102]
 gi|282590332|gb|EFB95411.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A10102]
          Length = 554

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|301385098|ref|ZP_07233516.1| PAS [Pseudomonas syringae pv. tomato Max13]
          Length = 1046

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 167/391 (42%), Gaps = 23/391 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E   +   +     +D     + V   DG +++ N ++   +  +  
Sbjct: 543 AWMRRQIRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQRE 602

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  +L     + + I+P
Sbjct: 603 DIIGKSATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQL----TIYHWILP 658

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  +++++D  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 659 FRDSLGEVQGIIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 718

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 719 IGMLELALKRADQGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERAN 775

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 776 LRQLVESVLRVFDGLARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMG 835

Query: 706 STVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLG 757
             V +     +           +V+++G  I  +  K +F  F    + GQ  R G GLG
Sbjct: 836 -RVKIALQAVDNPDPQLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLG 894

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L I  S   + GG++S+ S     T I+  +
Sbjct: 895 LVICRSLCMMMGGNLSLDSEPGNGTRISMNL 925



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 86/251 (34%), Gaps = 34/251 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI-- 231
           +  ++ +     + LS+     + L D     ++ RD+ G +   N SY +    +    
Sbjct: 545 MRRQIRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQREDI 604

Query: 232 ----VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                 ++ +G + +  +     + + +S         +   +      + I+   +S G
Sbjct: 605 IGKSATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQLTIYHWILPFRDSLG 664

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-----------------NR 326
           E     G  ID+S    + + L    E     + A + F                     
Sbjct: 665 EVQGIIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLEL 724

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-------PEQLNWKTWKENIF 379
            L+  ++  ++   I++A+ + N   D + + L  A          PE+ N +   E++ 
Sbjct: 725 ALKRADQGELDRSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVL 784

Query: 380 SVYKSSETHKD 390
            V+      KD
Sbjct: 785 RVFDGLARQKD 795


>gi|256376496|ref|YP_003100156.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM
           43827]
 gi|255920799|gb|ACU36310.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM
           43827]
          Length = 1433

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/656 (15%), Positives = 226/656 (34%), Gaps = 55/656 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
                A   +   +L+N +   + L          R  A        ++ +       V 
Sbjct: 287 ERRLDASAQVAAAELANTLDSARAL---------VRSYAERPEIREANFAEGVGALDAVR 337

Query: 234 QKA--IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA-- 289
           +    +     +F+         +         T           ++          +  
Sbjct: 338 EAVTSLQRQNPMFEATWAMDADGTLVAVSPGPSTPPRNNFAYRDYFQGALSTGGPYVSQV 397

Query: 290 --GIAIDVSKEITVNDQLTHTYEILHNLTVAIAI-----F------DQNRYLQFHNRSFV 336
             G+  D  + + +   +    EI+  +  +  I     F       Q+  L   +R   
Sbjct: 398 YEGLRADHPELVAIAAPVRVGSEIVGVIATSFPIGALTGFVSEVAAGQDVRLAVADRGGS 457

Query: 337 ELWE--IDLAFLATNPSNDELLEFLR----SANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            L    + +  L +   + ++   LR     A   P+    +T   ++  +  +     D
Sbjct: 458 LLTGEQLGVPGLTSGLGDPQIAAALRGQQGRATTGPDDNPVETSYRSVPGLGWAVVASID 517

Query: 391 TWHLPNGQ---TLHVIVTSNPRGGTIWMFENLTVQVD-----LETKYNTLVKVQGETIDH 442
           +     G    T  V+  +      + +   +TV+ +      E +           ++ 
Sbjct: 518 SRTAFAGVARFTGRVLAVTTLLLQMLLVGLVVTVRGERRGRLAEERLARSAAHTDSILNA 577

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             +      PDG +   N +   ++            +  +     R  + S    +   
Sbjct: 578 AGDAFVTIRPDGIVTRWNSSAERIFGWTGEEALGSALVDLVVPDPQRADHLSGVRRIIEG 637

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT---FVNVTDSVRAERALTEKN 559
              +     + +    +  S+   E ++         +      ++T+   AE  +    
Sbjct: 638 SRPTVLGTTREVVARRKDRSEFPAELTLWSSHYEDRRVFSAFIRDITERKAAEEEIARAR 697

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +    A  +K++FV ++S+E+R+PL  +IG T   +      L+ +Q  Y + +  S+  
Sbjct: 698 DEALSASRMKSAFVANMSHEIRTPLNGVIGLT---ELLLDTDLDCRQRDYAQTLQNSADA 754

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLG 678
           LL ++NDILD + ++AG ++++        L+ +V   +A       + I  V+      
Sbjct: 755 LLAVINDILDFSKIEAGKLEIDPVDFDPRALVEDVVSLLAASAQAAGLEIAAVVHPPMPP 814

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAA-----RDNGDFIFSVKNNGSSIPE 732
           + V D  R+ Q+   ++SNA+ F+ KG  V+ +  A         +  F+V + G  IP+
Sbjct: 815 TLVGDAHRVRQVLVNLVSNAIRFTPKGEVVVWVDVAPAAPGESGHEVTFTVADTGIGIPD 874

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           +  + +F  F        R   G GLGL+I +  + L GG + ++S     +    
Sbjct: 875 ERQQHLFEAFTQVDASTTRQYGGTGLGLTISKQLVELMGGEMGLASEPGEGSVFYF 930


>gi|83858320|ref|ZP_00951842.1| two-component sensor histidine kinase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853143|gb|EAP90995.1| two-component sensor histidine kinase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 770

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/363 (24%), Positives = 156/363 (42%), Gaps = 17/363 (4%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             ++   T +++ +G+ +  PDG I+  NPA R ++   E+ L  G  I  +     R  
Sbjct: 395 QNELSANTFENIIDGLILMRPDGSIQSLNPAARVMFGYAEDEL-IGQDISVLLPDGVRQE 453

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            E     +   I      E    +  ++      +E ++  +  A   L  + + D    
Sbjct: 454 REGAVRKISCFIEQHLVGETFEAEACMKNAEPLPVELTLSDVQRADGKLFGLMIRDISAR 513

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ--Y 609
           ++            + +K+ FV  V++ELR+PLT+++G   LL+          Q     
Sbjct: 514 KQ-----------MEVMKDEFVSTVNHELRTPLTSMLGSLSLLQARLQAKFKDDQKASTL 562

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++    S   L +LVNDILDL  + AG ++     +  +DL+ +V +S      E++++ 
Sbjct: 563 LDMAQRSCDRLHHLVNDILDLEKIAAGKLEYRMEEVPCDDLVQDVVESHRVLAEEHDVQF 622

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGS 728
            +           D  R  Q    +LSNA  +S  G TV +   R ++G    SV +NG 
Sbjct: 623 VLDLKADDPPVRLDVSRFTQALVNLLSNAAKYSPAGETVTILTRRLEDGHIRISVADNGP 682

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE+    +F+RF        RR  G GLGL+I ++ +    G +S  +     T  + 
Sbjct: 683 GIPEEFQPRIFDRFSQADSSTTRRVGGNGLGLNITKNLVEAFDGEISFDTKVGEGTVFHI 742

Query: 787 RIP 789
            +P
Sbjct: 743 LLP 745


>gi|186683692|ref|YP_001866888.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186466144|gb|ACC81945.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 684

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 160/390 (41%), Gaps = 29/390 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           V +  +     +           G+     +G  + +NP ++ +   +       + + +
Sbjct: 142 VAMNAELRQSEERLRSLSTCSPVGIFEIDTEGGCRYTNPRYQIICGLKATESLEKSWLES 201

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---- 538
           +          S    +      S +   ++ QG +       ++    P+ + Q     
Sbjct: 202 VHPEDRERAVASWSNYICEGRDYSEEFRFQTAQGII-----RWVQVRSSPMLSGQGELLG 256

Query: 539 -MLTFVNVTDSVRAER------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            + T  ++T+  +AE             +    A+ +K+ F+  +S+ELR+PLT+++G++
Sbjct: 257 YVGTLEDITERKQAEEVRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWS 316

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L++ KL   +   S+ +E I  ++   + L+ DILD++ +  G ++LN S + L  ++
Sbjct: 317 KILRSKKLD--DKATSRALEAIERNAISQMQLIEDILDVSRIIRGQLRLNVSAVNLISVM 374

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
               +++        I++  + D  +GS   D  RL QI   +L+NA+ F+ KG  V + 
Sbjct: 375 EAALEAVRPLAEPKEIQLNTVLDTSVGSVYGDPARLQQIVWNLLTNAIKFTPKGGRVEVN 434

Query: 712 AA--------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            +                 V + G  I  +    VF RF        R   G+GLGL+IV
Sbjct: 435 LSIVYGEEQQTTQKYAQIQVIDTGIGISSEFLPKVFERFRQADSTTTRSHNGLGLGLAIV 494

Query: 762 ESFINLHGGHVSISSSD-EGVTTINCRIPS 790
              + LH G +   S       T   R+P 
Sbjct: 495 RHLVELHKGTIFAQSPGSGQGATFTVRLPL 524



 Score = 45.3 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 20/155 (12%)

Query: 295 VSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            ++ + +N +L  + E L +L     V I   D     ++ N  +  +  +         
Sbjct: 138 AAQLVAMNAELRQSEERLRSLSTCSPVGIFEIDTEGGCRYTNPRYQIICGLKATESLEKS 197

Query: 351 SNDELLEFLRSANKLPEQLNWK--TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             + +          PE       +W   I      SE  +        + + V  +   
Sbjct: 198 WLESV---------HPEDRERAVASWSNYICEGRDYSEEFRFQTAQGIIRWVQVRSSPML 248

Query: 409 RG-----GTIWMFENLTVQVDLETKYNTLVKVQGE 438
            G     G +   E++T +   E     +++ Q  
Sbjct: 249 SGQGELLGYVGTLEDITERKQAEEVRAQVIREQTA 283


>gi|332307944|ref|YP_004435795.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175273|gb|AEE24527.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1172

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 138/744 (18%), Positives = 276/744 (37%), Gaps = 55/744 (7%)

Query: 80  NCLTIVWDGKDETPEII--GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137
               ++WD   E   I+               +DLL  E+  K      L+++   + K 
Sbjct: 156 EQQKLIWD---EQMFILHGSDPSGFSGSLNDWSDLLHPED--KEDALQSLTQSLTNIEKL 210

Query: 138 GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI---SV 194
             +F +V    +   I+   R   S     +  + G+  +++    + K L N +    +
Sbjct: 211 DIAFRIVTPLGDTRHIRAFARPVRSPNG-EVSKIIGVNYDISAQQQQQKWLENGLHSNEL 269

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ-KAIGESRKLFKEEIKKRMI 253
              +    D  V   D+  +I W N  + + T       Q K  G   +  +   +    
Sbjct: 270 LIKVLRETDNAVVITDENVNIKWTNPGFTRITGYYLEEVQGKNPGHILQGLQSSPESIAQ 329

Query: 254 SSSALEKNFCETVSTLE---HGNNKSYKIVRVLNS-----FGEAGIAIDVSKEITVNDQL 305
              A+ +     V  L     G+    KI            G   I  D++++      L
Sbjct: 330 MRQAVAQRERFNVEILNYCKDGSPLWLKINSHPTFQNGAFSGFIAIQSDITEQKNAELAL 389

Query: 306 THTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS------NDEL 355
                I    L +  + +   D +  +   N++ + +       L  + +        EL
Sbjct: 390 LKANRIQKAILDSAHLLMVSCDADGRILTCNQTTLTVLGYGQNELKQDANIQQFMLRSEL 449

Query: 356 LEFLRSANKL---PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-NPRGG 411
           L+F   +++    P +  +    +      + +   K+ + +P    +  I +  N   G
Sbjct: 450 LKFASQSSQHAQHPLEAFFYLASQGEVDENEWTFVTKNDYQIPMEVAVTGIFSPENTLEG 509

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +  +++     + +      +   T +    G      +     SN    S      
Sbjct: 510 YLLVARDISQIKRFKKERQRQQDLLETTGEMAKLGGWELDLN-----SNKVTWSDQVYHI 564

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF-DDERKSLQGTLELLSDSVLEYSI 530
           + L  G+ +         YY E     +  AI +S  +  R  LQ          +    
Sbjct: 565 HELPIGSEVD--LEKAMEYYPEEARPVVEEAINSSIANGNRWDLQVPFITAKGKHIWVRA 622

Query: 531 I---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +      N + ++      D    ++A     E  ++A   K+ F+ ++S+E+R+P+  I
Sbjct: 623 VGYAEYQNDEPVILRGAFQDITEMKKA----EEQAKEASRTKSEFLANMSHEIRTPINGI 678

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  DLL  ++   L  KQ  + E + +SS  LL L+NDILD + ++AG + +      L
Sbjct: 679 VGMNDLLLATE---LTKKQRHFAELVHSSSESLLLLINDILDFSKIEAGKLSIESIDFDL 735

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGS 706
           + LL  +  + A++  +  + +       +  ++A D  R+ Q+ + +L NA+ F+  G 
Sbjct: 736 HLLLGNIIDTFASRAQQKGLELIFDLHPDVPQWIASDPGRIRQVLNNLLGNAIKFTHHGE 795

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            ++           F + + G  I ED   ++F++F+       R   G GLGL+I +  
Sbjct: 796 IILRITLDGEKQLKFCIIDTGIGIHEDNQAALFSKFMQVDSSTTRNFGGTGLGLAISKQL 855

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
             L GG V +SS  +  +T    I
Sbjct: 856 SELLGGTVGVSSRWQQGSTFWFTI 879


>gi|213970545|ref|ZP_03398672.1| extracellular solute-binding protein/sensory box protein
           [Pseudomonas syringae pv. tomato T1]
 gi|213924716|gb|EEB58284.1| extracellular solute-binding protein/sensory box protein
           [Pseudomonas syringae pv. tomato T1]
          Length = 1062

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 167/391 (42%), Gaps = 23/391 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E   +   +     +D     + V   DG +++ N ++   +  +  
Sbjct: 559 AWMRRQIRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQRE 618

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  +L     + + I+P
Sbjct: 619 DIIGKSATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQL----TIYHWILP 674

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  +++++D  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 675 FRDSLGEVQGIIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 734

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 735 IGMLELALKRADQGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERAN 791

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 792 LRQLVESVLRVFDGLARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMG 851

Query: 706 STVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLG 757
             V +     +           +V+++G  I  +  K +F  F    + GQ  R G GLG
Sbjct: 852 -RVKIALQAVDNPDPQLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLG 910

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L I  S   + GG++S+ S     T I+  +
Sbjct: 911 LVICRSLCMMMGGNLSLDSEPGNGTRISMNL 941



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 86/251 (34%), Gaps = 34/251 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI-- 231
           +  ++ +     + LS+     + L D     ++ RD+ G +   N SY +    +    
Sbjct: 561 MRRQIRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQREDI 620

Query: 232 ----VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                 ++ +G + +  +     + + +S         +   +      + I+   +S G
Sbjct: 621 IGKSATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQLTIYHWILPFRDSLG 680

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-----------------NR 326
           E     G  ID+S    + + L    E     + A + F                     
Sbjct: 681 EVQGIIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLEL 740

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-------PEQLNWKTWKENIF 379
            L+  ++  ++   I++A+ + N   D + + L  A          PE+ N +   E++ 
Sbjct: 741 ALKRADQGELDRSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVL 800

Query: 380 SVYKSSETHKD 390
            V+      KD
Sbjct: 801 RVFDGLARQKD 811


>gi|182702029|ref|ZP_02619493.2| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|237793660|ref|YP_002861212.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182672093|gb|EDT84054.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|229263670|gb|ACQ54703.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 543

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 174/389 (44%), Gaps = 25/389 (6%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSL---------W 467
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L          
Sbjct: 126 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQ 184

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               N        + I       Y           +I   +++RK +   +E +S  ++ 
Sbjct: 185 NLNINSFILKEEQKKIRNKLELVYRNKRDIVCVEQVIQ--NNKRKKIN--VESISTYIIY 240

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +   + +    +T     + ++   E+ +   NE+ R+ +++   F+ ++S+EL++PL 
Sbjct: 241 NNKPAILSILRDITSQKQVEKLQKDVEKNIELLNES-REYNKLITDFLANISHELKTPLN 299

Query: 586 NIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I     +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN   
Sbjct: 300 VIFTAVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVN 359

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + +L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  
Sbjct: 360 CNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGS 419

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  + +       + I SVK+ G  IP D  +++F+RFV      R  + G G+GL +V+
Sbjct: 420 GGNIYVTVKDFEDNIIISVKDTGIGIPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVK 479

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SF+N+H G + I S     +     IP K
Sbjct: 480 SFVNMHEGTIDIQSEIGKGSEFIINIPVK 508


>gi|157363850|ref|YP_001470617.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
 gi|157314454|gb|ABV33553.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
          Length = 421

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 157/379 (41%), Gaps = 35/379 (9%)

Query: 423 VDLETKYNTLVKVQGETI---DHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT 478
            +LE + +   K +  T+   D + + +       G I  +N A + + +          
Sbjct: 60  KNLEDELSMAQKSRENTLTLLDSIMDPILFVDSSSGEILFANTAAQKMSRPIVTT----- 114

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             R I      YY           +I  FD+  KS      +   +V+ +          
Sbjct: 115 --RKIYEALEDYY-----------LIEMFDEAVKSWH----IQEGNVVMHVEGKKRYYSC 157

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +T V +    R    L        + +E++  FV +VS+ELR+PLT+I G+ + L    
Sbjct: 158 KMTPVLLPRGERRVVILLHDMTKEYELNEMRREFVSNVSHELRTPLTSIHGYAETLLNDP 217

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                ++   +++ I   S  +  L+ND+LDL  +++G  + ++  I L  ++  V    
Sbjct: 218 DMDAETRDR-FLKIIENESARMSRLINDLLDLERLESGEARFDFQKIDLCSVVKYVVSIT 276

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS---SKGST-VILKAAR 714
                + +++++   +    +   D+ RL+Q+   +  NA+ ++     G   V +   +
Sbjct: 277 EPLSIDYDVKVEYDCEE--VTIDGDQDRLIQMLLNLADNAVKYTSLKESGEKKVSISVKK 334

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
           +    +  V + G  +P D    +F+RF         +  G GLGLSIV++ ++ H G +
Sbjct: 335 EGSQAVIRVSDTGPGMPRDALNRIFDRFYRVDKGRSRKMGGSGLGLSIVKTIVDRHNGQI 394

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S     T+   ++P +
Sbjct: 395 FVESEPGAGTSFTVKLPVE 413


>gi|148378343|ref|YP_001252884.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|148287827|emb|CAL81893.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 617

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 174/389 (44%), Gaps = 25/389 (6%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSL---------W 467
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L          
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQ 258

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               N        + I       Y           +I   +++RK +   +E +S  ++ 
Sbjct: 259 NLNINSFILKEEQKKIRNKLELVYRNKRDIVCVEQVIQ--NNKRKKIN--VESISTYIIY 314

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +   + +    +T     + ++   E+ +   NE+ R+ +++   F+ ++S+EL++PL 
Sbjct: 315 NNKPAILSILRDITSQKQVEKLQKDVEKNIELLNES-REYNKLITDFLANISHELKTPLN 373

Query: 586 NIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I     +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN   
Sbjct: 374 VIFTAVQILDLYKKDAESYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVN 433

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + +L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  
Sbjct: 434 CNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGS 493

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  + +       + I SVK+ G  IP D  +++F+RFV      R  + G G+GL +V+
Sbjct: 494 GGNIYVTVKDFEDNIIISVKDTGIGIPRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVK 553

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SF+N+H G + I S     +     IP K
Sbjct: 554 SFVNMHEGTIDIQSEIGKGSEFIINIPVK 582


>gi|149180956|ref|ZP_01859457.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148851240|gb|EDL65389.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 607

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 143/383 (37%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F NLT ++ + +       +     + ++++GV      GR+ L N     +  
Sbjct: 238 GQLAITFNNLTKRLQEAQATTEGERRKLSSVLSYMTDGVIATDRKGRVILINDPAAKMLN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +     +  +       Y   D  +   +II  +  + +               +
Sbjct: 298 VSRETVLSQPLVSLLG--LDENYTFEDLSNEQDSIILDYSTKEQPYILRAN--------F 347

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D  +  FV +VS+ELR+PLT + 
Sbjct: 348 SVIQKETGFVNGIITVLHDITEQE-----------KIDMERRDFVSNVSHELRTPLTTMR 396

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++      +  ++ LVND+L L+ +D+   + N   I   
Sbjct: 397 SYLEALAEGAWQD-EEIAPRFLSVTQDETERMIRLVNDLLQLSKMDSKDYRFNKEWIEFV 455

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
              +++           N+  K            D+ +L Q+   I+SNA+ +S +G  +
Sbjct: 456 GFFHQIIDRFEMS-KNQNVTFKRQLPKTALFVEIDKDKLTQVLDNIISNALKYSPEGGLI 514

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
                  +   + SV + G  IP+D    +F RF         Q  G GLGL+I +  I+
Sbjct: 515 AFNVVEKDKMIVVSVSDQGLGIPQDNLSKIFERFYRVDKARSRQMGGTGLGLAIAKEMIS 574

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG++   S +   TTI+  +P
Sbjct: 575 AHGGNIWAESKEGKGTTISFSLP 597


>gi|56416592|ref|YP_153666.1| histidine kinase sensor protein [Anaplasma marginale str. St.
           Maries]
 gi|255002934|ref|ZP_05277898.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Puerto Rico]
 gi|56387824|gb|AAV86411.1| histidine kinase sensor protein [Anaplasma marginale str. St.
           Maries]
          Length = 468

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 143/313 (45%), Gaps = 21/313 (6%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           + DG  +F  +I ++    ++L+G   +L        +IP+  A      + V    R+ 
Sbjct: 155 QDDGPKVFLQVIKNYGKLSQALRGVHGML--------VIPVGVAILSCVCLVVLFYRRSA 206

Query: 553 R----------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           R           L E+ E   +    K+ F+ +VS+ELR+PL +IIGF++++++  LG +
Sbjct: 207 RLLSSQYDANLELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPI 266

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + +  +Y+  I  S   LL+L+NDILD +  +A  + + +    L  +++     +  +
Sbjct: 267 GSEEYKEYINDIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPR 326

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  + +K     +    +AD +R+ Q+   +LSN++ F+ +G  V L A       I 
Sbjct: 327 AKDAKVELKKEMPEEPIVMLADPKRMKQVIINVLSNSVKFTPEGGLVKLCAEIRGEQLIV 386

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + + G  I +     V + F      H  +  G GLGL + +  + L  G  SI S   
Sbjct: 387 EISDTGIGIAQQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPN 446

Query: 780 GVTTINCRIPSKE 792
             T +    P K+
Sbjct: 447 LGTIVTLTFPHKQ 459


>gi|323442919|gb|EGB00542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus O46]
          Length = 546

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 189 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 248

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 249 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 295

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 296 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 341

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 342 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 399

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 400 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 458

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 459 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 518

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 519 EAHQGNIEVNSQVGKGSTFKVIL 541



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 200 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 252

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 253 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 310

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 311 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 369

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 370 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 422


>gi|83816271|ref|YP_444615.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855]
 gi|83757665|gb|ABC45778.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855]
          Length = 2002

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 142/819 (17%), Positives = 299/819 (36%), Gaps = 84/819 (10%)

Query: 31   AGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD 90
            AG LL ++I  +    QR    + + +  +FL ++ D +     LL E   L   W+ + 
Sbjct: 1197 AGTLLFSVIHDVT---QREEHRQDLADQKAFLDQVLDTIDDVFYLLDEQGDLLF-WNRRV 1252

Query: 91   ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL--VAETQ 148
               E+ G     ++               +     ++  A E+    GQ+  +     T+
Sbjct: 1253 N--EVTGYTDAELEAMTALDLF-------EGDDAARIRDAIEE-SAAGQAVRVEAPLVTK 1302

Query: 149  NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWH 208
            +   +  E       A  R   L GI  ++ +   + + L      F+ L +++    + 
Sbjct: 1303 DGRRVPHEFVGDAFDAPTRGRVLCGIGRDVTQQKERRRALRRANQRFEQLAETVPNAFYI 1362

Query: 209  RDQA-GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE-------- 259
                  ++L+AN + +     +    +       +         + S    +        
Sbjct: 1363 VTPDYSELLYANSAVETLYGVDRDTLRDNPSAWTRHVHPADLAALRSDIEAQNADEPRWP 1422

Query: 260  KNFCETVSTLEHGNNKSY--KIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILH 313
            ++    V     G  +    +I  + +  G     AG+  DV+ +     +L   Y +  
Sbjct: 1423 QHQEFRVLHPTRG-RRWLTARIDAIYDDEGALQRLAGVTTDVTDQKVREQRLRTLYRVTR 1481

Query: 314  NL-------TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
            +L         A  + D          + V L + D+   A    ++ +    R      
Sbjct: 1482 DLLDVSTKAGAASTVTDALGDTLGLQEAAVYLRDGDVLVRAGTIDSEVVGSMPRVEQ--G 1539

Query: 367  EQLNWKTWKENIFSVYKSSETHKDTW---------HLPNGQTLHVIVTSNPRGG------ 411
                W          Y    T  D           ++P GQ   + V +  +        
Sbjct: 1540 HTPLWAALSTGDTHAYSDPSTIDDGVDRSGLEGCAYVPLGQRGVLAVGAAAQNRLDDDEL 1599

Query: 412  -----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VAVFGPDGRIKLSNPAFRS 465
                     F++    +D E       +      +++  G V +F       L   A   
Sbjct: 1600 RLLEVVAQSFQDTLDALDQERDLIERERRYRTLAENIPNGAVFLFDEGLTYTL---AAGE 1656

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            L  T E   S     +                D F A +     +R+   G         
Sbjct: 1657 LLGTYELGESDLLGAQAGTVLVGIEGGRHPIVDRFEAALEGEQTDRRIGVG------GRT 1710

Query: 526  LEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            L   ++PL    NA+ ++   ++T++VR ER L    +A  +A+ +K+S + ++S+E+R+
Sbjct: 1711 LRVHVVPLQGDTNAKGLMLAQDITENVRKERELMSAKKAAEEANRMKSSLLANMSHEIRT 1770

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQS-------QYVEYISASSTILLNLVNDILDLATVDA 635
            PLT+I+GF ++++          ++       ++   I  S   L++ +  +L+L+ ++A
Sbjct: 1771 PLTSILGFAEMIEEEIGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDTLTGVLNLSRLEA 1830

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
            G M L    + L++   EV   +  +     +R++V + G+     AD   +  +   ++
Sbjct: 1831 GEMDLAAEPVDLSEQAREVAGELRPQAEAEGLRLQVQAGGEPIWAQADGGGVQIVLRNLV 1890

Query: 696  SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
            SNA+ ++  G  + L+  R+NG  +  V+++G  +  +  + +F  F   +     +  G
Sbjct: 1891 SNAIKYTDDGE-IRLRVYRENGSAMIEVEDSGIGMDPEKIEDLFKPFRQASEGMAREYEG 1949

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             GLGL++    +    G + + +     TTI  ++P +E
Sbjct: 1950 TGLGLAVTREAVEQMDGSIEVETEKGKGTTIRVQLPKEE 1988



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 72/548 (13%), Positives = 169/548 (30%), Gaps = 69/548 (12%)

Query: 60   SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWL 119
            + ++E  ++  K    L   +   + W+ +    +    L              +F   +
Sbjct: 836  TDVTERKERQRKLDLALAGTDTGVLEWNLQTGEMQWDETLQDLFG--HDPQTFEAFTEIV 893

Query: 120  KFHHYIKLSKATEKLRKEGQSFDLVA------ETQNDCAIKIEGRVSGSCAFLRILSLDG 173
              +    +  A E +   G+S++         E     +++         A +R+L   G
Sbjct: 894  HPNDLPDVEAALENMTSTGESWEGDFWLFHPEEGVARMSLRATPVHEKGEA-VRVL---G 949

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTETEGIV 232
            I +++     + + L+     ++ L  +    V   D   G I+ AN +    T   G  
Sbjct: 950  IATDVTAQWERQRDLATSRERYQTLLQANPDPVLVADAETGKIVEANAA---ATGLLGRP 1006

Query: 233  FQKAIGE---------SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI---- 279
             ++ IG            + +    ++ +     +      T   +      +  +    
Sbjct: 1007 REEIIGAHQTDLHPSGRAEAYASLFRRSLDEDGPMRALPDGTQIEVVTDEGTTVPVEVNA 1066

Query: 280  --VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQN-RYLQFHN 332
              V + +     G+  DVS+   +  +LT        +       + + D+    ++  N
Sbjct: 1067 TTVDLPDGRVVYGVFRDVSERKAMQKRLTRRERRFRMMFEGHSAPMLLIDEETGAIEQAN 1126

Query: 333  RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
             + VE +  +   L +          ++  N+LP +   +          +  +      
Sbjct: 1127 AAAVEFYGYERDILMSMS--------IQDINQLPAEEVAR----ERREAAEDGDEFLFEH 1174

Query: 393  HLPNG--QTLHVIVTSNP---RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             L +G  +T+ V+    P   R GT+   +  ++T + +             + +D + +
Sbjct: 1175 ELASGAVRTVRVLSAPIPNLDRAGTLLFSVIHDVTQREEHRQDLADQKAFLDQVLDTIDD 1234

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
               +    G +   N     +    +  L         A T    +   D   +  AI  
Sbjct: 1235 VFYLLDEQGDLLFWNRRVNEVTGYTDAELE--------AMTALDLFEGDDAARIRDAIEE 1286

Query: 506  SFDDERKSLQGTLELLSDSVLEYSII------PLPNAQTMLTFVNVTDSVRAERALTEKN 559
            S   +   ++  L       + +  +      P           +VT      RAL   N
Sbjct: 1287 SAAGQAVRVEAPLVTKDGRRVPHEFVGDAFDAPTRGRVLCGIGRDVTQQKERRRALRRAN 1346

Query: 560  EALRKADE 567
            +   +  E
Sbjct: 1347 QRFEQLAE 1354



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 73/542 (13%), Positives = 164/542 (30%), Gaps = 65/542 (11%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET---PEIIGQLHQ 101
           I QR      V E  + L+E   + ++    L   +     W   D+     E    L  
Sbjct: 341 IHQRKQAEASVQEKSAALAE---EKTRLRVALGAADAGVFEWSIPDDRRVWDERTQALFG 397

Query: 102 RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG 161
               PQT   LL     +       L     ++             +     + +  V  
Sbjct: 398 VDAAPQTTGALLGH---VHPDDRGHLQDTMARVLGTPDKETCQVRYRIRRPDREDRHVQA 454

Query: 162 SCAFLRILS-----LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW--------H 208
               LR        L G Y ++ E   + +KL      F+ +F   + L           
Sbjct: 455 RARILRDEDGDAERLIGTYQDVTERRRRRQKLRRRERQFEAVFQDPNLLTGLLDLDGTLR 514

Query: 209 RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           R     + + N   ++        ++    +     + ++++ +  ++  E    +    
Sbjct: 515 RVNDTALSFINAGREEVVGQS--FWETPWWDHDSALQADLQEWIQRAAGGEYVSYQYQHV 572

Query: 269 LEHG-NNKSYKIVRVLNSFGEAGIAI-----DVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              G        +R +     A  A+     DV+       +L   ++ + + T  +A+ 
Sbjct: 573 DADGLEYTIRGTIRPVTDRDGAVTALIASGRDVTAREDQRRELEVLHQAVEDSTEGMAVL 632

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
             + Y  + +++  +++  D                L   +++      +  ++ +F V 
Sbjct: 633 AGDEY-VYVDQTHADMYGFD----DKEQLLGNTWRMLYGEDEI------ERLEKTVFPVL 681

Query: 383 KSSETHK--DTWHLPNGQTLH--VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           +     +   T   P+G T    + +T    G  +    N+T + +   K   L+     
Sbjct: 682 EEEGHWQGLVTGQRPDGSTFPAALSLTVTEAGRLVCTVRNMTDRRNRNRKRQLLLTASET 741

Query: 439 TIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
                  G+A +    G+I+              N         +         + S   
Sbjct: 742 -------GIAEWDLQAGQIR--------WDGMLRNIFGRAPESTDDFFALIHPEDRSRVR 786

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSVRAER 553
           D F +++ S        +          +E  +IP+       + + +  +VT+    +R
Sbjct: 787 DGFDSVVDSASSWNGEFRIEDGDGRTRWIETLVIPIFEDGEVGRLLASGTDVTERKERQR 846

Query: 554 AL 555
            L
Sbjct: 847 KL 848


>gi|13937003|gb|AAK50005.1|AF361475_1 double histidine kinase DhkD [Dictyostelium discoideum]
          Length = 1546

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/412 (22%), Positives = 170/412 (41%), Gaps = 23/412 (5%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           Q +H +    P        E L  +++     +   K     +D + + VA+   +G + 
Sbjct: 31  QQIHYMRKQKPDHEKTR--EELIEEINHLRAVSNSNKNARIMLDEMYQFVALLDVNGNLL 88

Query: 458 LSNPAFRSLWKT------------EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
             N                          +   +I N+     +                
Sbjct: 89  DVNEPALQGGGMIRSSIQGIPFWDCSRWATSQENIDNVREAVHKASKGEFIRYETEIFGK 148

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S   E+ ++  +L  L +   E S+I           +   +  R    L    E +++ 
Sbjct: 149 SAGTEKITIDFSLMPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKEL 208

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           DE+K  F  +VS+ELR+PL  I+G TD L   +   +N    + +E ++ ++  LL +VN
Sbjct: 209 DELKTQFFANVSHELRTPLALIVGPTDKLLKDENVDIN--VRKDLEIVARNARGLLKIVN 266

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++LD++ ++AG M LNYS + L   ++ +         E ++   +I+  +      D  
Sbjct: 267 NLLDISRLEAGKMNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAIDAD 326

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFN 740
           ++ ++ + ++SNA  F+  G  V     +     +   F   V + G  IP+++ + +F 
Sbjct: 327 KMQRVITNLISNAFKFTPSGGAVKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFE 386

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF  V  +   +  G GLGLSIV+ F+ LHGG V+I +   G      R+P 
Sbjct: 387 RFRQVDGSSTRKHGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLPL 438



 Score =  212 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 136/357 (38%), Gaps = 52/357 (14%)

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             I+ +    S Y N+    +   A + +    +K+ Q   E LS +  +   +       
Sbjct: 657  RIKLLQNGVSDYVNKPFSSEELVARVVNLMTMKKAKQFLQEELSSANTDLQEL------I 710

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK--- 595
                    D       L ++   L   ++ K+ F  ++S+ELR+PL  I+G+  LL    
Sbjct: 711  NQLTNKKRDLQTLVGELEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDI 770

Query: 596  ---------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
                     +  +   +S     +E I   ++    L+ND+LD++ +      L    + 
Sbjct: 771  DSGGSSGGGSGSISGDDSTVRTGLETIERCASSQNQLINDLLDMSLIIGDKFSLILGDVD 830

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGK-------LGSFVADRQRLLQIFSKILSNAM 699
            L  L+     SI        I +     G+       L + V D+ RL Q+   +LSN++
Sbjct: 831  LPILIENAISSILVTAQSKKISVHSNIQGEGEEESSILRNIVGDKARLQQVIWNLLSNSI 890

Query: 700  DFSSKGSTVILKAARDNG------------------------DFIFSVKNNGSSIPEDMC 735
             F+ +   + L     N                           +F++ +NG  IP+   
Sbjct: 891  KFTKEKGRIHLNLKVVNQIPSREVLGFCSNPMFNTINRHGDRWILFTITDNGKGIPKQFL 950

Query: 736  KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
             SVF+RF            G+G+GLSI ++ I+LH G V  +S  +   +     +P
Sbjct: 951  PSVFDRFKQADCSSTRSYGGLGIGLSITQNIIHLHKGAVYANSEGENKGSQFTVVLP 1007


>gi|239834297|ref|ZP_04682625.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
 gi|239822360|gb|EEQ93929.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
          Length = 1047

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/618 (18%), Positives = 233/618 (37%), Gaps = 38/618 (6%)

Query: 199  FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMI 253
             D        R+    I   N   ++    +     K      +        E    R I
Sbjct: 434  LDIAPTPG-RRESDKVISLLNACAQEKVAADQARILKEREREERPEGGLTKTERNAFREI 492

Query: 254  SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
            +    ++    + ST E G      +           +A++ +   T          +L 
Sbjct: 493  ADRLRKQGLASSRSTSEPGALSEEAVADSPQP-----VAVEEAALHTPGPTHGDETALLA 547

Query: 314  NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            NL V + I   +  + + N++ ++L   +   L        +     S +   E      
Sbjct: 548  NLPVPVIIHSGDT-IHYVNQALLDLTGYES--LDDIRGAGGVDVLFNSESDDGETRQGMV 604

Query: 374  WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL-------- 425
             +       +  + H +     +G+ L + +       T    E     V+         
Sbjct: 605  LR-RADGSEEPVDAHLNAIAWRDGRALMLSLMPVAAPATPAPVETAAAPVETPVAMDKDN 663

Query: 426  -ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
             +      V+     +D  ++GV +  P+GRI+  N +  +L+  +    + G     + 
Sbjct: 664  EKQALADHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYDREE-TEGKFFSMLF 722

Query: 485  ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFV 543
            A  S+         L    + S  ++ + + G         L  +I  LP+ +       
Sbjct: 723  AIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLR 782

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
            ++T   R E  LT   +   +A   K  F+  +S+E+R+PL  IIGF++L+   K G + 
Sbjct: 783  DITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIG 842

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            N +   Y+  I+ S   +L LVND+LD++ ++AG + + +  + LND + E    +  + 
Sbjct: 843  NDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIALMQPQA 902

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIF 721
            +   + I+      L   VAD + + Q+   +LSNA+ F++ G  VI+  + + NGD + 
Sbjct: 903  NRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVM 962

Query: 722  SVKNNGSSIPEDMCKSVFNRFVS----------NAHRGQRRGVGLGLSIVESFINLHGGH 771
             V++ G  + +   +     F            +A   +  G GLGL + ++ +  +   
Sbjct: 963  RVRDTGIGMTKSEVEQALKPFRQVNALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQ 1022

Query: 772  VSISSSDEGVTTINCRIP 789
             +I S+    T +    P
Sbjct: 1023 FAIDSTPGHGTVVEIAFP 1040


>gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 844

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/553 (18%), Positives = 214/553 (38%), Gaps = 63/553 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +  +    +    I+ + T  I  F Q+  + F N+++   + +    +         
Sbjct: 58  EAKSALEASESRYQAIVEDQTELICRFRQDGTVTFVNQAYCRYFNLTPEQIVGK----SF 113

Query: 356 LEFLRSANKLPEQLNWKTWKEN----IFSVYKSSETHKDTWHLP--------NGQTLHVI 403
           L  + + N+     + K   +     I      + T +  WH           GQ   + 
Sbjct: 114 LPLIPAENQEKVSQDLKGLTQQNPVIIHEHQVIAPTGEMGWHQWTNRGIFDDKGQVREIQ 173

Query: 404 VTSNP-----------------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                                       + E +   +D+E   N   +   + ++     
Sbjct: 174 AVGRDITQLKQIEAELRQTLEKEKTLNQIAERIRESLDIEDILNKTCEETRQILECDRVA 233

Query: 447 VAVFGPD--GRIK------------------LSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           V  F PD  G                     +    F    K    + +    +++I   
Sbjct: 234 VYQFKPDWSGEFIAESVALGWVPLVGETVKKVWQDTFLQRTKGGRYKYNQIFAVKDIYTA 293

Query: 487 CSR--YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFV 543
             +  + +  + +   A +I     + +         + +  ++S   +    Q  +   
Sbjct: 294 GHQQCHLDLLEQFQARAYLIIPIFVQNQLWGLLASYQNSAPRDWSPQNIKLLKQISIQLG 353

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                      L +   A   A+  K+ F+ H+S+ELR+PL  I+GF+ LL  +   +LN
Sbjct: 354 LALQQGELLSQLQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLL--NHDSTLN 411

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y++ I+ S   LL L+ DILD+A ++AG + L  ++  L+ L+  ++Q    K  
Sbjct: 412 EEQQEYIDIINRSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQ 471

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
           +  +++ V  D  + +++  D  +L Q+   +LSNA+ F+ +G  ++  + + + +    
Sbjct: 472 DKGLQLFVEIDPSIPAYILTDEGKLRQVLINLLSNAIKFTQRGQIILRVSEKPDPETPYL 531

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +F V+++G  I  D    +FN F      R  + G GLGL+I   F+++ GG + +S   
Sbjct: 532 LFEVEDSGPGIECDEAPKLFNPFFQTELGRKTQEGTGLGLAISRHFVSIMGGSLWVSCPL 591

Query: 779 EGVTTINCRIPSK 791
            G T  +  +P +
Sbjct: 592 SGGTLFHFDLPVE 604



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 22/160 (13%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            S   +       L    S ++ + +    L+    Q G + + N +Y        +  +
Sbjct: 50  RSSGHQLEEAKSALEASESRYQAIVEDQTELICRFRQDGTVTFVNQAY---CRYFNLTPE 106

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH--------------GNNKSYKIV 280
           + +G+S         +  +S           V   EH               N   +   
Sbjct: 107 QIVGKSFLPLIPAENQEKVSQDLKGLTQQNPVIIHEHQVIAPTGEMGWHQWTNRGIFDDK 166

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYE---ILHNLTV 317
             +      G   D+++   +  +L  T E    L+ +  
Sbjct: 167 GQVREIQAVG--RDITQLKQIEAELRQTLEKEKTLNQIAE 204


>gi|172036692|ref|YP_001803193.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698146|gb|ACB51127.1| probable two-component hybrid sensor and regulator [Cyanothece sp.
           ATCC 51142]
          Length = 835

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 170/378 (44%), Gaps = 30/378 (7%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  + + E +         + + ++  G+ +   +G+IK +NPA  ++++     L  
Sbjct: 216 REIKRRKNTEFQLIKQENKFKDLVYNIDNGIILVDTEGKIKFANPAALAIFEQPLQSLLE 275

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                 I +         +   + A   T F +   +     E   +SV   SI  +   
Sbjct: 276 YDFGIPIVSN-----KPVELEIIKAKNKTGFVEMNVTFT---EWEKESVYLVSIREI--- 324

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                    T+  +AE AL +  E    A++ K  F+ +VS+ELR+P+  I+GF +LLK 
Sbjct: 325 ---------TERKKAEEALIKAKEEADLANQAKTEFLANVSHELRTPMNAILGFAELLKL 375

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            KL +      +Y+E I  SS  LL+L+ND+LD+  V+AG ++LNY    +  LL E+  
Sbjct: 376 -KLKAQEPPIYEYIETIYNSSNSLLSLINDLLDINQVEAGKIELNYHGFSVRTLLTEIIN 434

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             + +  +  +++ V     +  F+  D  RL QI   ++ N++ F+SKG  + +  +  
Sbjct: 435 IFSNQASKQQLQLLVDIQDNVPEFINFDSLRLRQILVNLIGNSLKFTSKG-YIKVSLSMQ 493

Query: 716 N-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           N     G     V++ G  I ++  + +F  F+ +  +   R  G GLGL I +      
Sbjct: 494 NLYGNYGTLKIEVQDTGIGIKDEDKQQIFEAFIQSQGQDNYRYGGNGLGLFITQKITEFL 553

Query: 769 GGHVSISSSDEGVTTINC 786
           GG +++ S     +T   
Sbjct: 554 GGTITLDSEWGEGSTFTL 571


>gi|117925519|ref|YP_866136.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609275|gb|ABK44730.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1049

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 169/377 (44%), Gaps = 13/377 (3%)

Query: 423 VDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +DL+T    L + +      ++H    +  + PDG I   N    S +   E  L   + 
Sbjct: 395 LDLQTSMRALSEREANYRYLVEHARSIILRWKPDGVITFCNDYALSFFGYSEQALLGSSV 454

Query: 480 IRNIAATC-SRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNA- 536
              I     S   N     D  A    SF   E +++      +  +    +I+      
Sbjct: 455 YETIVPNRESSGRNLHQRVDEVANTPNSFTFHENENICKDGRRVWVAWANRAILDEQGQL 514

Query: 537 -QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            + +    ++T     ++ LT   +A   A+  K++F+  +S+E+R+P+ +I+G TDLL 
Sbjct: 515 KELLSVGADITHLKMIQQELTLARDAANAANRAKSAFLAVMSHEIRTPMNSILGMTDLLM 574

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +L+++Q   ++ I+ +   L+ ++NDILDL+ ++A  ++L      L++L+  + 
Sbjct: 575 EH---ALDAEQRHALQAIARAGDALMIIINDILDLSKIEADRLELELVETDLDNLMANLG 631

Query: 656 QSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +  +  E  +++ ++ + +L      D+ RL QI   ++ NA+ F+ +GS  +  +  
Sbjct: 632 DMLTLRAQEKGVKLSLLREEQLSPYRWCDQVRLRQILVNLIGNAIKFTHQGSIEVKLSKG 691

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
                 FSV ++G  I     +++F  F         +  G GLGLSI +  + L GG +
Sbjct: 692 PGNRIRFSVSDSGIGIDLQQQEAIFESFNQGDSSVTRRYGGTGLGLSISQRLVKLMGGVL 751

Query: 773 SISSSDEGVTTINCRIP 789
            + S     +T    IP
Sbjct: 752 KVYSRPGKGSTFFFTIP 768


>gi|329890390|ref|ZP_08268733.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845691|gb|EGF95255.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 776

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 152/370 (41%), Gaps = 10/370 (2%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
             +++    E +  + +GV+V+  D R+ L N  +  +    +  L PG   R +     
Sbjct: 248 RRSVLGQLLEAVHAMPDGVSVYDADDRLILWNQRYSEIAPHLQGVLRPGVTFREVLEAGI 307

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           R     D      A I      R+      E+ ++D  L     P      +    +++D
Sbjct: 308 RSGVYPDIVGREDAWIEERLACRRIATAPREIKVADRWLRVQDRPTVGGGAVTVCSDISD 367

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R   AL E  +A   A+  K+ F+ ++S+E+R+PL  +IG    L  +K   L+  Q 
Sbjct: 368 LKRDAAALAEARDAANAANRAKSRFLANMSHEIRTPLNGVIGVAQALTRTK---LSQHQQ 424

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +E I +SS  L  L++DILDLA V++G ++L    + L   + E     A    +  +
Sbjct: 425 EMLELIQSSSRTLQTLLSDILDLARVESGRLELKEEPLDLARTVEEAALLYAAAARDKGL 484

Query: 668 RIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSV 723
           +  V    +       D  RL Q+ + ++SNA+ F++ G    TV    A       F +
Sbjct: 485 QFIVEVAPEAQRWIYGDAVRLKQVLTNLVSNAVKFTASGFVSLTVDAVPAEAPQTLRFVI 544

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G          +FNRF            G GLGL+I      + GG +   S     
Sbjct: 545 QDTGIGFDAQTQARLFNRFEQADGDITRHYGGSGLGLAICRELAAMMGGDLGCESEPGAG 604

Query: 782 TTINCRIPSK 791
                 +P K
Sbjct: 605 AAFILSLPFK 614



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 47/118 (39%), Gaps = 3/118 (2%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L    E +H +   ++++D +  L   N+ + E+       L    +  E+LE    +  
Sbjct: 252 LGQLLEAVHAMPDGVSVYDADDRLILWNQRYSEIAPHLQGVLRPGVTFREVLEAGIRSGV 311

Query: 365 LPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
            P+ +  +  W E   +  + +   ++   + + + L V       GG + +  +++ 
Sbjct: 312 YPDIVGREDAWIEERLACRRIATAPREI-KVAD-RWLRVQDRPTVGGGAVTVCSDISD 367


>gi|309791779|ref|ZP_07686267.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226185|gb|EFO79925.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 861

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 130/271 (47%), Gaps = 11/271 (4%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S++ L      L         +    L    E  + AD  K+ F+  +S+ELR+PL  II
Sbjct: 589 SMVGLTIQNVQLYHNLEHQVAQRTEELRAALEKAQLADRRKSDFLTGISHELRTPLNAII 648

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+ +L     G L   Q +  + I+ +   LL+L+N++LDLA ++AG + L+   + L 
Sbjct: 649 GFSTVLIDELDGPLAPMQREDAQSINRNGRFLLHLINELLDLARIEAGHLDLDLGRVDLA 708

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L++EV  ++   +    + +       L +  AD  R+ QI   +LSNA+ F+ +G T+
Sbjct: 709 PLVSEVLDTMQGLLRSGQVSLNQNLPADLPAVCADADRIRQILFNLLSNAVKFTERG-TI 767

Query: 709 ILKAARDNG---------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGL 758
            + A   +            +  +++ G  IP +    +F  FV    +  +RRG GLGL
Sbjct: 768 TVSANLRDEIGPDGNAQSMVVMHIRDTGIGIPANRQHEIFEEFVQVHDKRLRRRGTGLGL 827

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +IV   +  H GH+ + SS    +T +  +P
Sbjct: 828 AIVRRLVEAHQGHIWVESSPNEGSTFSFSLP 858


>gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 844

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 103/553 (18%), Positives = 214/553 (38%), Gaps = 63/553 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +  +    +    I+ + T  I  F Q+  + F N+++   + +    +         
Sbjct: 58  EAKSALEASESRYQAIVEDQTELICRFRQDGTVTFVNQAYCRYFNLTPEQIVGK----SF 113

Query: 356 LEFLRSANKLPEQLNWKTWKEN----IFSVYKSSETHKDTWHLP--------NGQTLHVI 403
           L  + + N+     + K   +     I      + T +  WH           GQ   + 
Sbjct: 114 LPLIPAENQEKVSQDLKGLTQQNPVIIHEHQVIAPTGEMGWHQWTNRGIFDDKGQVREIQ 173

Query: 404 VTSNP-----------------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                                       + E +   +D+E   N   +   + ++     
Sbjct: 174 AVGRDITQLKQIEAELRQTLEKEKTLNQIAERIRESLDIEDILNKTCEETRQILECDRVA 233

Query: 447 VAVFGPD--GRIK------------------LSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           V  F PD  G                     +    F    K    + +    +++I   
Sbjct: 234 VYQFKPDWSGEFIAESVALGWVPLVGETVKKVWQDTFLQRTKGGRYKYNQIFAVKDIYTA 293

Query: 487 CSR--YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFV 543
             +  + +  + +   A +I     + +         + +  ++S   +    Q  +   
Sbjct: 294 GHQQCHLDLLEQFQARAYLIIPIFVQNQLWGLLASYQNSAPRDWSPQNIKLLKQISIQLG 353

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                      L +   A   A+  K+ F+ H+S+ELR+PL  I+GF+ LL  +   +LN
Sbjct: 354 LALQQGELLSQLQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLL--NHDSTLN 411

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +Y++ I+ S   LL L+ DILD+A ++AG + L  ++  L+ L+  ++Q    K  
Sbjct: 412 EEQQEYIDIINRSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQ 471

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
           +  +++ V  D  + +++  D  +L Q+   +LSNA+ F+ +G  ++  + + + +    
Sbjct: 472 DKGLQLFVEIDPSIPAYILTDEGKLRQVLINLLSNAIKFTQRGQIILRVSEKPDPETPYL 531

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +F V+++G  I  D    +FN F      R  + G GLGL+I   F+++ GG + +S   
Sbjct: 532 LFEVEDSGPGIECDEAPKLFNPFFQTELGRKTQEGTGLGLAISRHFVSIMGGSLWVSCPL 591

Query: 779 EGVTTINCRIPSK 791
            G T  +  +P +
Sbjct: 592 SGGTLFHFDLPVE 604



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 22/160 (13%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
            S   +       L    S ++ + +    L+    Q G + + N +Y        +  +
Sbjct: 50  RSSGHQLEEAKSALEASESRYQAIVEDQTELICRFRQDGTVTFVNQAY---CRYFNLTPE 106

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH--------------GNNKSYKIV 280
           + +G+S         +  +S           V   EH               N   +   
Sbjct: 107 QIVGKSFLPLIPAENQEKVSQDLKGLTQQNPVIIHEHQVIAPTGEMGWHQWTNRGIFDDK 166

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYE---ILHNLTV 317
             +      G   D+++   +  +L  T E    L+ +  
Sbjct: 167 GQVREIQAVG--RDITQLKQIEAELRQTLEKEKTLNQIAE 204


>gi|307153439|ref|YP_003888823.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306983667|gb|ADN15548.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1258

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/681 (16%), Positives = 249/681 (36%), Gaps = 73/681 (10%)

Query: 156  EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
            EG+V G  A +         +++ +       L      F+++ +S   ++W  D+ G  
Sbjct: 605  EGKVEGFVALI---------NDITDRKRIEDNLRESEERFRMMANSSPVMIWVSDETGGR 655

Query: 216  LWANISYKKNTETEGIVFQKAIGES------RKLFKEEIKKRMISSSALEKNFCETVSTL 269
             + N ++   +   G  FQ+ +G+        +     +   + +  A +    E     
Sbjct: 656  TFVNQTWLNLS---GRSFQEELGDGWTKSLHPEDVSRCLDTYLYALDAHQPFEIEYRIKA 712

Query: 270  EHGNNKSY------KIVRVLNSFGEAGIAIDVSKEI-------TVNDQLTHTYEILHNLT 316
             +G  +        +  +     G  G   DV++              L    ++L    
Sbjct: 713  ANGEYRWILERGCPRFTKFAKFSGYIGSCTDVTERQRALQALQESEQALQQHAQMLDLAN 772

Query: 317  VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE-FLRSANKLPEQLNWKTWK 375
             +I I D +  + + N+    L+    A +     N  L   F +S +++ + L    + 
Sbjct: 773  DSIIICDLDESIAYWNQGAERLYGWTKAEVQGQRINSLLKTVFPQSISEIHDILKTLGYW 832

Query: 376  ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
            +   +  +   +           TL       P    + + +++T +  +E       + 
Sbjct: 833  QGELTQTREDGSQIVVSSRW---TLQYNSDGQPI-AILAISDDITERKQVEAALLRSEER 888

Query: 436  QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                 +  + G+++   +GR    N     +       L   T  + I        N + 
Sbjct: 889  FRGIFEQAAVGMSLLNLEGRWLRVNHKLSLIVGYSPEELLEMT-FQEITYPEDLETNLNY 947

Query: 496  GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----------TMLTFVN 544
               L A  I ++  E++ ++    L+    +E ++  +  A             +     
Sbjct: 948  VRQLLAGEIETYSMEKRYIRRDQSLI---WVEITVSLVREAGHSSQQIGQPQYFITVVEE 1004

Query: 545  VTDSVRAERALTEKN--------------EALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            + +  +AERAL E+                 L+K ++  + F   VS++L++PL  I   
Sbjct: 1005 IGERKQAERALQERAVELTSLNTVLASTTAMLQKRNQELDQFAYIVSHDLKAPLRAIANL 1064

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            ++ ++      L  +  Q ++ +      + NL+N +L+ + V  G  +    T  + +L
Sbjct: 1065 SEWIEEDLQAELPPENQQQLQLLRQRVYRMENLINGVLEYSRV--GRKETTIETFSVLEL 1122

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVI 709
            L +V  S++           +     + +    +  L QIFS ++ NA++   +    V 
Sbjct: 1123 LTDVIDSLSP-----PPTFTIEIVSPMPTLTGIKLFLGQIFSNLIGNAINHHPRADGHVW 1177

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
            + A      + F+V ++G  I  +  + +F  F +     +    G+GL+IV+  + L G
Sbjct: 1178 ISAKELENFYEFAVSDDGKGIAPEHHQRIFGIFQTLEKSEKPESTGIGLAIVKKIVELQG 1237

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G++++ S     TT +   P 
Sbjct: 1238 GNITVESEVNQGTTFHFSWPK 1258



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 84/563 (14%), Positives = 190/563 (33%), Gaps = 66/563 (11%)

Query: 56  NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
            E      ++ +   ++  L    + +   W    +   ++        I     D L  
Sbjct: 237 TEQRLANRQLKESELRFRQLAENIDQVF--WISSAQKANLLYISPAYQTIWGKSCDSLYE 294

Query: 116 --ENWLK---FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA---FLR 167
              +WL         +++KATEKLR   + F      ++   I+ +G +    A   F+R
Sbjct: 295 FPRSWLDSVHPEDQQRVAKATEKLRSTQEDF-----KEDYRIIRPDGEIRWIAARTFFIR 349

Query: 168 ILS-----LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
             +     + G+  ++ E     +        F+ L +S  F V   +  G + +AN  Y
Sbjct: 350 DENGNKYRVAGLAEDITERKRAEEANKESERRFRRLVESNLFGVAFANTQGKVHYANDYY 409

Query: 223 KKNTETEGIVFQKAIGESRKLFK-----------EEIKKRMISSSALEKNFCETVSTLEH 271
            +         Q  +    ++             EE+K + ++++  ++ F +    +  
Sbjct: 410 LRMLGYTQQELQAGLISWERMTPAEWLPLDFKALEELKIKGVATAFEKEYFHKKGQRVPI 469

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRY 327
               ++       +    G  +D+++       L    E LH +  A    IA  D N  
Sbjct: 470 LIGAAFLDEPYSKATEMIGFFLDLTRVKEAEKALQRREEELHLIADAAPALIAYVDANEC 529

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE- 386
            +F+N  + + + I +  +      + + + L           ++  +  I  V K  E 
Sbjct: 530 YRFNNGRYEQWFGIPIEQIKGKTIKETIGDKL-----------YQDIRPRIEQVLKGEEV 578

Query: 387 THKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +++    LP G+  ++     PR        G + +  ++T +  +E       +     
Sbjct: 579 SYEQEIFLPIGECRYIRANYVPRFDGEGKVEGFVALINDITDRKRIEDNLRESEERFRMM 638

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR-----LSPGTHIRNIAATCSRYYNES 494
            +     + V    G     N  + +L             +   H  +++     Y    
Sbjct: 639 ANSSPVMIWVSDETGGRTFVNQTWLNLSGRSFQEELGDGWTKSLHPEDVSRCLDTYLYAL 698

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           D    F       +   K+  G    + +            +  + +  +VT+  RA +A
Sbjct: 699 DAHQPFE-----IEYRIKAANGEYRWILERGCPRFTKFAKFSGYIGSCTDVTERQRALQA 753

Query: 555 LTEKNEALRKADEIKNSFVQHVS 577
           L E  +AL++  ++ +  + + S
Sbjct: 754 LQESEQALQQHAQMLD--LANDS 774



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 132/420 (31%), Gaps = 27/420 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           +   L     K   L    +    + +S+    +  D      + N   +   E  +  +
Sbjct: 115 VEQNLQFLQEKEALLEMTNTQVSQILESITEGFFTVDHQWGFTYINHHCEMIFERAKQEL 174

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
             + I +     +  + ++   + A +++     S         Y+I       G A   
Sbjct: 175 LGQNIWQVLPEVEATVYEQFHQALAQQRSIRLEKSIFSQSEQ-YYEIRAYPIPKGLAVYV 233

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAI-AIF----DQNRYLQFHNRSFVELWEIDLAFLA 347
           +DV+++   N QL  +      L   I  +F     Q   L + + ++  +W      L 
Sbjct: 234 LDVTEQRLANRQLKESELRFRQLAENIDQVFWISSAQKANLLYISPAYQTIWGKSCDSLY 293

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS- 406
             P     L+ +      PE               +           P+G+   +   + 
Sbjct: 294 EFPR--SWLDSVH-----PEDQQRVAKATEKLRSTQEDFKEDYRIIRPDGEIRWIAARTF 346

Query: 407 --NPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                 G       + E++T +   E       +     ++    GVA     G++  +N
Sbjct: 347 FIRDENGNKYRVAGLAEDITERKRAEEANKESERRFRRLVESNLFGVAFANTQGKVHYAN 406

Query: 461 PAFRSLWKTEENRLSPG-THIRNIAATCSRYYNESDGWDL-FAAIITSFDDE--RKSLQG 516
             +  +    +  L  G      +        +     +L    + T+F+ E   K  Q 
Sbjct: 407 DYYLRMLGYTQQELQAGLISWERMTPAEWLPLDFKALEELKIKGVATAFEKEYFHKKGQR 466

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              L+  + L+         + +  F+++T    AE+AL  + E L    +   + + +V
Sbjct: 467 VPILIGAAFLDEPYS--KATEMIGFFLDLTRVKEAEKALQRREEELHLIADAAPALIAYV 524



 Score = 74.2 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 153/479 (31%), Gaps = 52/479 (10%)

Query: 117 NWLKFHHYIKLS---KATEKLRKEG--QSFDLVAETQNDCAIKI-EGRVSGSCAFLRILS 170
           +W +      L    KA E+L+ +G   +F+     +    + I  G       + +   
Sbjct: 426 SWERMTPAEWLPLDFKALEELKIKGVATAFEKEYFHKKGQRVPILIGAAFLDEPYSKATE 485

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--NTET 228
           + G + +L       K L        ++ D+   L+ + D      + N  Y++      
Sbjct: 486 MIGFFLDLTRVKEAEKALQRREEELHLIADAAPALIAYVDANECYRFNNGRYEQWFGIPI 545

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
           E I  +           ++I+ R+      E+   E    L  G  +  +   V    GE
Sbjct: 546 EQIKGKTIKETIGDKLYQDIRPRIEQVLKGEEVSYEQEIFLPIGECRYIRANYVPRFDGE 605

Query: 289 ------AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVEL 338
                   +  D++    + D L  + E    +     V I + D+     F N++++ L
Sbjct: 606 GKVEGFVALINDITDRKRIEDNLRESEERFRMMANSSPVMIWVSDETGGRTFVNQTWLNL 665

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PN 396
                    +  S  E L    + +  PE ++     +       + +  +  + +   N
Sbjct: 666 ---------SGRSFQEELGDGWTKSLHPEDVSRCL--DTYLYALDAHQPFEIEYRIKAAN 714

Query: 397 GQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQG---ETIDHLSEG 446
           G+   ++    PR        G I    ++T +           +      + +D  ++ 
Sbjct: 715 GEYRWILERGCPRFTKFAKFSGYIGSCTDVTERQRALQALQESEQALQQHAQMLDLANDS 774

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           + +   D  I   N     L+   +  +  G  I ++  T                I+ +
Sbjct: 775 IIICDLDESIAYWNQGAERLYGWTKAEVQ-GQRINSLLKTV-----FPQSISEIHDILKT 828

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNE 560
               +  L  T E  S  V+        N+       +    ++T+  + E AL    E
Sbjct: 829 LGYWQGELTQTREDGSQIVVSSRWTLQYNSDGQPIAILAISDDITERKQVEAALLRSEE 887


>gi|218246423|ref|YP_002371794.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
 gi|218166901|gb|ACK65638.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
          Length = 442

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E + + +   Q  +T   +    R  + L  +N+ L K  + K+ ++ H+++ELR+PLT 
Sbjct: 173 EINTLEMIVNQIAITIHQIQLEERL-KDLESENQRLHKTSQNKSDYLSHINHELRTPLTG 231

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF  +L+    G LN KQ QY+  I+ S   LL LVND LDL+ ++A   ++   TI 
Sbjct: 232 ILGFAKMLREELYGPLNEKQKQYINGIAVSGEHLLALVNDFLDLSKIEAEREEIFLETIA 291

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + D+       + +K  E  I + +     +     D++R+ QI   +LSNA+ F+ KGS
Sbjct: 292 VEDICLSAISIVDSKAKEQGINLIIEIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS 351

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESF 764
            V L    D     F + + G  I +D  K +F  F    +    + +G GLGL++    
Sbjct: 352 -VTLAVKSDREMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKL 410

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
             LHGG ++++S     +     IP K
Sbjct: 411 AQLHGGDLTLTSEMGKGSCFTLHIPIK 437


>gi|71909457|ref|YP_287044.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849078|gb|AAZ48574.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 860

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/423 (20%), Positives = 165/423 (39%), Gaps = 36/423 (8%)

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             H   G    + +     GGT+++           ++     ++     D     + + 
Sbjct: 293 WHHQLYGVLAMLALFLALSGGTVYLLHG------YASRLGERERMLRTIFDTSDGAIFLV 346

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI-ITSFDD 509
            P G+I L+N    ++W      L    ++  I      +  E     + + I     + 
Sbjct: 347 DPAGKIVLANERMATMWDVPLAELVGSEYVSLIHPAEREFGRERMLKLMASEIPFVRLER 406

Query: 510 ERKSLQGTL--------ELLSDSVLEYSII--------PLPNAQTMLTFVNVTDSVRAER 553
           E     GT+         LL +      ++        P  NA+ + T+    + +  ER
Sbjct: 407 EYVKRDGTVFWGFLCGRRLLDEQGKFVGLVGLIADIDEPKRNARELETYRQHLEDLVRER 466

Query: 554 --ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L    +A   A+  K++F+ ++S+E+R+P+  I+GF  LL+      +  KQ+  ++
Sbjct: 467 TAQLEGAKDAAELANRAKSAFLANMSHEIRTPMNAIVGFAHLLRR---DGVTPKQADRLD 523

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  LL ++ND+LD++ +++G + L      + D++  +    A +     +  + 
Sbjct: 524 KIMGSAEHLLAIINDVLDISKIESGKLVLEAKPFRVVDVVERLVGLCAERAQSKGLAFRT 583

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
           +        V D  RL Q     + NA+ F+  G T+ L+A     D       F V++ 
Sbjct: 584 MVGALPPVLVGDCTRLSQALLNYVGNAIKFTEAG-TITLRAEVLEEDAHSLLVRFEVQDT 642

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D+   +F  F    +   R   G GLGL+I      L GG   + S     +T 
Sbjct: 643 GIGIAGDVLSRLFRPFEQADNSTTRKYGGTGLGLAITLRLAELMGGQAGVDSEAGVGSTF 702

Query: 785 NCR 787
              
Sbjct: 703 WLT 705


>gi|315918685|ref|ZP_07914925.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313692560|gb|EFS29395.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 417

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 171/387 (44%), Gaps = 22/387 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +++  + T   +  TK      +     D+   G A F       L+   +         
Sbjct: 38  LFINIDTTETTNAYTKIQEFENLFLLIGDYAKVGFAHFN-----VLTRDGYAQDTWYRNL 92

Query: 473 RLSPGTHIRNIAATCSRYYNESDGW------DLFAAIITSFDDE----RKSLQGTLELLS 522
               GT +  +    +    E          ++     TS   E    R++ + T   ++
Sbjct: 93  GEKEGTPMPQVIGVYAHVVPEDQAVLKNFVGEVKTGKATSLRKEVRVCRENGKYTWTSIN 152

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             V +Y        + +    ++T     E+ L    +   + D +K++F+ ++S+E+R+
Sbjct: 153 VMVRDYRPQD-GIIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRT 211

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL  +      S++ +Y++ +  ++ +LL L++DILDL+ ++AG     Y
Sbjct: 212 PLNAIVGFSSLLAET---DSRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVY 268

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + + +N+  +E+ +S+  K+    + + +           D+ R  Q+ S  ++NA+ F+
Sbjct: 269 TNVDVNETCSEIIKSMGMKV-GKGVELILEEPFPECYIYTDKNRFTQVISNFINNALKFT 327

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS  +      +    F V++ G  IPE+  KSVF RFV      Q  G GLGLSI +
Sbjct: 328 QQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ--GTGLGLSICK 385

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
           S ++  GG + + S++   +      P
Sbjct: 386 SIVSQMGGEIGVESTEGVGSCFWFTHP 412


>gi|258627627|ref|ZP_05722403.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
 gi|258580070|gb|EEW05043.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
          Length = 1586

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/402 (24%), Positives = 169/402 (42%), Gaps = 45/402 (11%)

Query: 419  LTVQVDLETKYNTLVKVQGE--------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT- 469
            LT  V    ++N  ++ Q E         ++   E   +   +G IK+ N     ++   
Sbjct: 687  LTSMVKQREEWNLQLQNQKEKEVFRFKALLESSPEATLIVDTNGIIKMVNEEAEKVFGYG 746

Query: 470  ------EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELL 521
                            + +  A  ++++    G       + S + E   +    ++++ 
Sbjct: 747  RDELEGYPMHRLFPHDLESARAKHAQWHELRPGNQRIEIAVRSDETEFPVEISSSSVQMD 806

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               ++  SI             N+TD +  E+ L +      +A + K+ F+ + S+E+R
Sbjct: 807  DGLLISVSI------------RNITDRLAFEQTLKQALHDAEQATQAKSVFLANTSHEIR 854

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +PL  I+G T LL      SL   Q + V+ I  S   LL +VND+LDL+ ++A  M L 
Sbjct: 855  TPLNAILGLTHLLSDE---SLTESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILE 911

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
               + L + L EV    +T+    N+  K+     L    +AD  RL QI + +LSNA+ 
Sbjct: 912  ALPLDLREFLEEVASVFSTQAEAKNLDFKLEIGVDLPHWVIADSMRLRQILTNLLSNALK 971

Query: 701  FSSKGSTVILKAA---------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            F+S G  + L+A           +     FS+ + G  I E+  K +F  F        R
Sbjct: 972  FTSVGH-IALRAEIIDKFIWKGAEKNIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSR 1030

Query: 752  R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            R  G GLGLSIV   + L  G + + S +   +T    +P +
Sbjct: 1031 RFGGTGLGLSIVHKLLGLMEGKIGVESREGQGSTFWTDMPLQ 1072


>gi|186681478|ref|YP_001864674.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186463930|gb|ACC79731.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 683

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 143/297 (48%), Gaps = 8/297 (2%)

Query: 503 IITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEK 558
           I    ++ R+ +     LL      L  +I      QT+       +    ER   L + 
Sbjct: 381 IAHQCNEPRQWIDSEKNLLIAIAEQLAIAIYQAELMQTLTQEKQTLEQRVIERTIGLRDA 440

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             A   A+ +++ F+  +S+EL +PLT +IG +  L    LG L+ +Q  Y++ I  S  
Sbjct: 441 LLAAEAANRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQRQRDYLQTIHDSGE 500

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRIKVISDGK 676
            LL ++NDILDL+ ++AG   LN S   L ++  +  +S+  K    + N+ + +  D  
Sbjct: 501 HLLEMINDILDLSQIEAGKTALNISEFSLVNVAEKALESLRNKATSEQINLNLDLQIDPS 560

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
              F AD +R+ QI S +L+NA+ F+ +   V L+   ++   IF V++ G  I E+   
Sbjct: 561 RDRFTADAERVAQILSNLLTNAIKFTPESGNVTLRLWVEDDTAIFQVEDTGIGIREEQLP 620

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F +F       R +  G GLGL++ +  + LH G + + S+    +     IP++
Sbjct: 621 LLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTISIGSIFTVWIPTQ 677


>gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 744

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 159/391 (40%), Gaps = 34/391 (8%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
              + E +Y  LV+ QG+        +      GR+   N  F   +      +   T +
Sbjct: 57  EIAEREERYRDLVRAQGDV-------IIRKDLRGRLTYVNDVFCDTFGKLRTDVIGRTFV 109

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--QT 538
            ++          S            +D+   + +G   +   +  E++I        + 
Sbjct: 110 PDLPEGERPRMLASFSGLSMPPYRIRYDERTLTARGARCI---AWEEFAIRDEDGKLVEI 166

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                +VTD   AE  L    E  ++A+  K+ F+  +S+E+R+P+  +IG T LL  +K
Sbjct: 167 QAVGRDVTDRKDAEEKLAIALEQAKEANRAKSLFLATMSHEIRTPMNGVIGMTKLLLDTK 226

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+  Q  Y E + AS   LLN++NDILD + ++AG + L+ +     ++L  V + +
Sbjct: 227 ---LDPAQRSYAEAVRASGEALLNIINDILDYSKIEAGKVTLDEAAFDPRNVLESVAELL 283

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  + I       +    + D  R+ QI   +  NA+ F+ +G  V L+  R+  
Sbjct: 284 APRAFDKGLEIVTEISPSVPRMLMGDEARIRQILLNLAGNAIKFTGRGG-VALRLLREET 342

Query: 718 D---------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
                            I  V++ G  + E   + +F+ F      H  +  G GLGL+I
Sbjct: 343 SPAGRRIDGKREGRIGLILEVEDTGIGMDEQAREHIFDDFAQADQSHARRYEGTGLGLAI 402

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  +    G + + S +   +     +P +
Sbjct: 403 TKRLVGAMEGRIEVESEEGRGSVFRAHLPLR 433


>gi|323704635|ref|ZP_08116213.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536097|gb|EGB25870.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 610

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 176/410 (42%), Gaps = 29/410 (7%)

Query: 389 KDTWHLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDL--ETKYNTLVKVQGETID--- 441
           K    +  G+   VI        G     F N+  ++    E++   ++  + +T+    
Sbjct: 215 KSIREVKEGELDQVISIKTDDELGKLAVEFNNMIRRLKQYEESQLGKIIDERNKTLSIVK 274

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            +++ + V   D +I L N A   L+  EE        + ++               LF 
Sbjct: 275 SINDPLLVLNSDYKIILLNGAAEELFGIEEKNAIDKHFLLSVKDE-----------KLFE 323

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            I    D +    +       D   + +I P+ N ++ ++ + +      E         
Sbjct: 324 QINAIVDSKFNINKVEQVKYGDKYYDVTITPIKNYKSEISDILLVFHNITE--------- 374

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ D+ K+ F+  +S+E ++PLT+I+  T ++   K+G +N KQ   +  I   S  L 
Sbjct: 375 FKELDQAKDDFISIISHEFKTPLTSIMMGTSMILEEKIGVINDKQRSTLVAIEEESEKLT 434

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVN++++L  +++G    N+    +  +     + +    +E  + +    D  +    
Sbjct: 435 ELVNELIELTKIESGKEMYNFKCCSIFGIAQNTVKPLYNIANEKGVNLTNTIDEDMPGVY 494

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD +++  + + +++NA+ ++  G  + + A+ D      SVK+ G+ IP++    +F++
Sbjct: 495 ADPEKITWVLNNLITNALKYTDAGDDITISASVDGDFMQISVKDTGAGIPKEYKDKIFDK 554

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  V N    + +G GLGL++V+  +  HGG V   S  +  +     +P
Sbjct: 555 FFHVQNDDEFEIKGTGLGLAVVKEIVEAHGGKVWCESDIDIGSNFMFTLP 604


>gi|224369669|ref|YP_002603833.1| two-component hybrid sensor and transmitter protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692386|gb|ACN15669.1| two-component hybrid sensor and transmitter protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 617

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 185/429 (43%), Gaps = 35/429 (8%)

Query: 371 WKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           W   ++ +  V ++ E    +  H  +G  L  +   +        + NLT + ++    
Sbjct: 112 WMATRQKLNEVAENLEPLINEKDHSKDGLILQYLEEKS--------YVNLTNRNNVYALI 163

Query: 430 NTLVKVQGETIDHLSEGVA--VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
             L       +  L+  V   +   D  + L       +       L   + +R + A  
Sbjct: 164 RYLRSEFEVKLTRLTVMVYQEIKNRDFHLILQIAVLGGIIAIC-VSLILVSFLRQLQAYL 222

Query: 488 SRYYNESDGW---DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
            + ++  +     DL   +  S +DE   + G + L +D++     +             
Sbjct: 223 KQLHHSMEIIGRGDLSEKLEVSGNDELSQISGAINLTTDNLKRLHTV------------- 269

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                +    L+   E   KA   KN F+ ++S+E R+PL  IIGF+  +  S   +L+ 
Sbjct: 270 ---LEQRVNELSLAKEEAEKASRAKNVFLANMSHEFRTPLNAIIGFSSHIAQSA--ALDP 324

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +++  IS S   LL L+N +L ++ ++AG  ++N  T  L DLL ++    + K  E
Sbjct: 325 EERKHLSIISNSGNHLLTLINSVLAMSKIEAGKTEVNERTTNLQDLLADIHAMFSLKAAE 384

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +   +I    L + V  D  +L QI   +++NA+ F+++G   ++    D  + +F +
Sbjct: 385 KALSFDLICHPDLPAIVQVDDVKLWQILINLINNAIKFTARGGVKVIVEKNDTPEILFKI 444

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  + +D    +F+ FV     +G   G GLGL+I  S+I+L GG V + S     +
Sbjct: 445 RDTGPGMAKDEQAMIFDPFVQLATDQGINEGTGLGLAICRSYIHLMGGEVKVDSVRGKGS 504

Query: 783 TINCRIPSK 791
           T    IP K
Sbjct: 505 TFFFSIPLK 513


>gi|188576475|ref|YP_001913404.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520927|gb|ACD58872.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1131

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 129/810 (15%), Positives = 266/810 (32%), Gaps = 116/810 (14%)

Query: 75  LLTENNCLT-IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH--YIKLSKAT 131
           L+  +     ++ D   + P + G           D  LL    W               
Sbjct: 185 LVAADGSTLHVISDHVQDMPSLQGDFPLEAAQGLRDA-LLENRPWFTTDTMTPGAPDYVA 243

Query: 132 EKLRKEGQSFDLVAET-QNDCAIKIEGRVSGS-CAFL----RILSLDGIYS-ELAETTLK 184
           E+ R  G    L     ++   +   G    +   +L     ++ L      E  +    
Sbjct: 244 EQYRHSGLRASLAIPLHKHGRLVAAIGVHQRAPRHWLSTEIELVRLVAARCWESMQRAKA 303

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
            ++L+ + +  + L ++L  +++  D  G   + N  + + T  +    + A        
Sbjct: 304 QQQLAGNEARLRRLANTLPQIIFIADPDGRPHYFNQRWYEYTGLDPSNNEDAAWHRAHTA 363

Query: 245 KE---EIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDV 295
                  +   ++ +       E       G ++ +  + + V    G      G   D+
Sbjct: 364 DGLRLSAQAWTLALNGKRAFEMECELLRHDGQSRWHLARALPVRGDDGSISEWIGTYTDI 423

Query: 296 SKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAF 345
                   QL         +   +   I + D      + N  + +         +D  +
Sbjct: 424 HDRRAFEQQLRESEVRFRALCETVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQALDQGW 483

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--------PNG 397
                 +D      R  +   + LN +      + V +    ++  W +         +G
Sbjct: 484 WDVMHPDDA----ARVRHAFEQALNQRGEFIAEYRVRRHDGQYR--WCINTASPHFASDG 537

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-----EGVA--VF 450
           + L          G I    +++ +  +E    +   + G            + +A  V 
Sbjct: 538 RFL----------GHIGSLTDISERKHIEDATASDRAILGLITTGAPLPVVLDAIALSVE 587

Query: 451 GPDGRIKLSNPAFRSLWKT---------------------------EENRLSPGTHIRNI 483
                +   +   R   +                                LS    ++ I
Sbjct: 588 ARSEILLYCSVMVRDEVRHTLSFGSAAHFPIEYRGHFAPSPIGEDGPPCALSAHLGLQVI 647

Query: 484 AATCSRYYNESDGWDLFAAI------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            A      + ++   + AA+      IT   D    + GTL +  D       +P    Q
Sbjct: 648 CADIRADASFANHHAISAAMGIAACCITPILDSNGQVLGTLNIYYDRP----HLPSLREQ 703

Query: 538 TMLTFVNVTDSVRAER------------ALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            M    +    +  ER            A T        A  +K+ F+  +S+ELR+PL 
Sbjct: 704 AMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHASRVKDEFLATLSHELRTPLN 763

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G++ L+++      +    + +  I  S+     +++D+LD++ + +G ++L     
Sbjct: 764 AILGWSRLMQSEMTEPTH--LGRGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQAEHF 821

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSK 704
            +  L+    + +        I +++ +       F  D  RL Q+ + +LSNA+ F+  
Sbjct: 822 DIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFTPV 881

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           G TV +    ++      V++ G  I  D    VF+RF        RR  G+GLGLSI  
Sbjct: 882 GGTVRVAMDIEDERLRLCVQDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISR 941

Query: 763 SFINLHGGHVSISSS-DEGVTTINCRIPSK 791
             ++LHGG +  SS+ +         +P +
Sbjct: 942 QLVDLHGGSLGASSAGEGQGALFTIVLPFQ 971



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 98/307 (31%), Gaps = 37/307 (12%)

Query: 35  LTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE 94
           L+T I ++ L+  R   + +  +    L+    +L +   L      +  + D  D  P 
Sbjct: 280 LSTEIELVRLVAARCWESMQRAKAQQQLAGNEARLRR---LANTLPQIIFIAD-PDGRPH 335

Query: 95  IIGQ-LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND--- 150
              Q  ++   +  ++ +  ++            +   + LR   Q++ L    +     
Sbjct: 336 YFNQRWYEYTGLDPSNNEDAAWHR----------AHTADGLRLSAQAWTLALNGKRAFEM 385

Query: 151 --CAIKIEGRVSGSCAF---LR-----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
               ++ +G+     A    +R     I    G Y+++ +     ++L      F+ L +
Sbjct: 386 ECELLRHDGQSRWHLARALPVRGDDGSISEWIGTYTDIHDRRAFEQQLRESEVRFRALCE 445

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           ++  ++W  D  GD ++ N  +   T                   +  + R     AL +
Sbjct: 446 TVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQALDQGWWDVMHPDDAARVRHAFEQALNQ 505

Query: 261 NF---CETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEI 311
                 E       G  +        +        G  G   D+S+   + D       I
Sbjct: 506 RGEFIAEYRVRRHDGQYRWCINTASPHFASDGRFLGHIGSLTDISERKHIEDATASDRAI 565

Query: 312 LHNLTVA 318
           L  +T  
Sbjct: 566 LGLITTG 572


>gi|300866501|ref|ZP_07111191.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335458|emb|CBN56351.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 795

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/517 (21%), Positives = 200/517 (38%), Gaps = 63/517 (12%)

Query: 291 IAIDVSKEITVNDQ----LTHTYEILHNLTVAIAIFDQNR-------YLQ-FHNRSFVEL 338
           +A D+++   +  +         +   +L  A++I D+++        L    N+   +L
Sbjct: 325 LAEDLARRAAIALEKALLYQEAQKRGEDLRQALSILDEHQQQLRTLQRLTNLLNQRVRDL 384

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPN 396
             +    +    S     +F       P+  QLN               E     W   +
Sbjct: 385 RSLLQVMVDAVVSAIAGAQFCLIVLSDPDDNQLNLTAAAGRGIENLPIGEPLCTIW---D 441

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
              L V VT +       M  +LTV+ DL  ++     +    I+  S G       G I
Sbjct: 442 RLLLRVFVTGHSE----LMRRDLTVE-DLHEEFPAA--IYAVAIESASAGRL-----GTI 489

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + N          +N  +     + +     +           AAI  +     K+L+ 
Sbjct: 490 AIGN---------WDNTNAFNPEAQQLLMAVGKQ----------AAIAINNAQLIKALEK 530

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             ELL               Q  +      +     + +  +N  L +A  +K+ F+  V
Sbjct: 531 REELL-------------ETQNQILLRQNQELESQRQHIELQNLQLLEAARLKSHFLSTV 577

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+P+  IIGF++LL   +   +NS+Q   V+ I  +   LL L+N+ILDL+ ++AG
Sbjct: 578 SHELRTPMNAIIGFSELLLRQRQPPINSQQIDMVQRILKNGKNLLMLINNILDLSRIEAG 637

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +L      L +L+           +E  + + V         V D+ RL Q+   +LS
Sbjct: 638 RTELEIEEFDLTNLVLCTALDFGIIANEKILSMSVYIYLDNPCIVNDKSRLRQVLVNLLS 697

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           NA+ F+ +GS  I  +       +  +++ G  I E     +F +F       +R+  G 
Sbjct: 698 NAVKFTERGSIYIHVSELSADKLLIEIRDTGIGIAETQIPHIFEKFRQVDQTTKRKYPGT 757

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGL+I  S +NL  G + + S     ++    +P +
Sbjct: 758 GLGLAITASLVNLMKGKIKVESEVGKGSSFRLELPRQ 794


>gi|71275082|ref|ZP_00651369.1| PAS [Xylella fastidiosa Dixon]
 gi|71163891|gb|EAO13606.1| PAS [Xylella fastidiosa Dixon]
          Length = 558

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 181/468 (38%), Gaps = 44/468 (9%)

Query: 351 SNDELLEFLRSANKLPE------QLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVI 403
           +N      LR  + + E        +   + +    V  S +  H +   L    ++ V+
Sbjct: 77  TNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARALRRWYSVEVM 136

Query: 404 VTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               P G  +  +F ++T    +E +            D L   V VF   G ++  N A
Sbjct: 137 RVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTA 196

Query: 463 FRSLWKTE-----ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +   +  +         S   H  ++     +            A++ +     +   G 
Sbjct: 197 YGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA-----RRYDG- 250

Query: 518 LELLSDSVLEYSIIPL--PNAQTMLTFVNVTD-SVRAERAL---------TEKNEALRKA 565
                   +E S  P   P+   +    N  D + R E  L                   
Sbjct: 251 ----QWRWIEMSATPRYSPDGHFIGLTGNSPDVTERLEIELAREQLLKSERAARNEAENM 306

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNL 623
             +K+ F+  +S+ELR+PLT I+G+++LL       +  +   Y  +  I++S+ +   L
Sbjct: 307 ARLKDEFLSTLSHELRTPLTTILGWSELLLQR----IEEQHPCYKGLSVIASSAKVQKRL 362

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LDL+++  G M+L    + L + + EV       +     R+ + +       + D
Sbjct: 363 ISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGD 422

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QIF  +LSNA+ F+     + ++   D   F  SV ++G  I  +    +F+RF 
Sbjct: 423 ATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAEFLPHLFSRFR 482

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
                  R   G+GLGL+IV+S + +HGG+V  +S            +
Sbjct: 483 QADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 530



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G     N S+ ++   + +V +   G       E IK+    + + ++   E  +    
Sbjct: 71  DGIFRLTNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARAL--- 127

Query: 272 GNNKSY--KIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD 323
              + Y  +++RV    G     + +D+++   +  +L  +    + L   +     +FD
Sbjct: 128 --RRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFD 185

Query: 324 QNRYLQFHNRSFVELWEIDLA-------FLATNPSNDELLEF-LRSANKLPEQLNWKTWK 375
               ++F N ++ E + +DL+        +  +P +  + EF L +A K    L      
Sbjct: 186 AQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA 245

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                 ++  E      + P+G  + +   S           ++T ++++E     L+K 
Sbjct: 246 RRYDGQWRWIEMSATPRYSPDGHFIGLTGNSP----------DVTERLEIELAREQLLKS 295

Query: 436 QGET 439
           +   
Sbjct: 296 ERAA 299



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGI 231
           ++ E     ++L+     F +L D L   VW  D  G + + N +Y        +     
Sbjct: 152 DITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTVP 211

Query: 232 VFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
            +   +     L F+ ++   + + SAL             G  +  ++          +
Sbjct: 212 EWSMVLHPEDVLIFEFKLSAALKTQSALRALVRARRY---DGQWRWIEMSATPRYSPDGH 268

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G  G + DV++ + +        +
Sbjct: 269 FIGLTGNSPDVTERLEIELAREQLLK 294


>gi|24215121|ref|NP_712602.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24196185|gb|AAN49620.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 731

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 7/244 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L  + E   KA++ K+ F+ ++S+ELR+PL +IIGF+ L++         ++++Y
Sbjct: 324 QRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQ---FPEGMERENRY 380

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  S   LLN++NDILDL+ ++A  + LN S   L +L++   + I  +     + +
Sbjct: 381 LDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEAITKKLEM 440

Query: 670 KVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
                 K       AD +R+ Q+   +L NA+ F+     +++   +   +F  +V+++G
Sbjct: 441 TFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQLAVQDSG 500

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +    +F  F       R    G GLGL IV+  +  H G + + S+    +   
Sbjct: 501 IGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESALGKGSKFV 560

Query: 786 CRIP 789
              P
Sbjct: 561 VIFP 564


>gi|153953972|ref|YP_001394737.1| PhoR [Clostridium kluyveri DSM 555]
 gi|219854586|ref|YP_002471708.1| hypothetical protein CKR_1243 [Clostridium kluyveri NBRC 12016]
 gi|146346853|gb|EDK33389.1| PhoR [Clostridium kluyveri DSM 555]
 gi|219568310|dbj|BAH06294.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 575

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 167/407 (41%), Gaps = 41/407 (10%)

Query: 391 TWHLPNGQTL-HVIVTSNPRGGTIW-MFENLTVQVD--LETKYNTLVKVQGETIDHLSEG 446
           T+ + +G     VI+ S    G +   F ++  +++  L+   +   K+    +  +  G
Sbjct: 191 TFSIASGNLNKRVIINSKDEIGRLSKTFNHMADKLENTLKDSIDKTNKL-EAILKSMDNG 249

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V       +I + NP  + ++   ++          I         + +  D+F ++   
Sbjct: 250 VIAVDTSYKIIMINPYAKKIFGISKDV---------IGENLMDSIRDFELEDIFKSVKKE 300

Query: 507 FDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           + + R  +  +  L + +D    Y I        +    ++TD  R E            
Sbjct: 301 YKEIRILRPKERDLRIKTD----YIINSNEKIGIVAVVQDITDIKRLE------------ 344

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              +++ FV +VS+EL++PLT+I GF + LK          +++++  I   +  L  L+
Sbjct: 345 --NMRSQFVANVSHELKTPLTSIKGFAETLK---YVEDVENRNKFLNIIDDEAERLTRLI 399

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           NDIL L+ +++  M      I +N ++++V   +     +           ++     D 
Sbjct: 400 NDILTLSHIESNEMD-KIEFIDINGIIDDVCYMMKPFA-DKKHIKIKKISCEMPDIWGDA 457

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            R  Q+   ++ NA+ +++ G  V +  A    D +  V++NG  I ++  + +F RF  
Sbjct: 458 DRFKQMVINLVDNAIKYTNNGGWVKVGTAFQENDCLIWVEDNGVGISKEHQERLFERFYR 517

Query: 745 NA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   + G GLGL+IV+       G + ++S     +    RIP
Sbjct: 518 VDKARSRSQGGTGLGLAIVKHITLKFSGTIELNSEIGKGSKFTVRIP 564



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 13/124 (10%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           D+      IL ++   +   D +  +   N    +++ I    +      + L++ +R  
Sbjct: 234 DKTNKLEAILKSMDNGVIAVDTSYKIIMINPYAKKIFGISKDVIG-----ENLMDSIRDF 288

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
                +  +K+ K+    +       +D     +      I+ SN + G + + +++T  
Sbjct: 289 EL---EDIFKSVKKEYKEIRILRPKERDLRIKTD-----YIINSNEKIGIVAVVQDITDI 340

Query: 423 VDLE 426
             LE
Sbjct: 341 KRLE 344


>gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 942

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 174/457 (38%), Gaps = 34/457 (7%)

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           DE+ +  R+  +  E    +   E+        E + +       +T  +      + G 
Sbjct: 256 DEIADMARAVEQFLEDRRQRRQAEDAL-----KELNAELEARVAQRTAELSTALAGQAG- 309

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEE 471
                 +  +   E             I+++ + V V   +       N A   L     
Sbjct: 310 -----EIAERQHAEDALRESENFLNSIIENIPDMVFVKEAETFHYVRFNKAAEQLLGYRR 364

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L   +         + ++   D   L +  +    +E    +  L L+    +    +
Sbjct: 365 EELLGRSVHDLFPVDEANFFALKDRAVLESRRMIDIPEEPVHTRHGLRLVHTMKIPIVDM 424

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSFV 573
                  +    ++T+  +AE  L    E L                     ++ K+ F+
Sbjct: 425 RGEPRFLLGISRDITEQKQAEAELRRYREHLEDMIRERTAELAVAKERADAANQAKSEFL 484

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            H+S+ELR+PL  I+G+  +LK     +L+  Q   +  I  S   LL L++DILD+A +
Sbjct: 485 AHMSHELRTPLNGILGYAQILKRD--TTLDQHQLDGLTVIQRSGEHLLTLIDDILDIAKI 542

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           +AG M+LN S + L   ++ + ++I  K  E  +         L + V  D  RL Q   
Sbjct: 543 EAGRMELNLSDVPLEQFVSFIAETIRVKATEKGLDFVCEMPPDLPACVRVDEIRLRQALL 602

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            +LSNA+ F+ KGS  +  A        F V++ G  I +   + +F+ F   +    R 
Sbjct: 603 NLLSNAIRFTEKGSVRLRVAFLPPARLCFEVRDTGIGIDQGRLEEIFSPFEQVSDDRHRF 662

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+I    + L GG + + S  +  +  +  +
Sbjct: 663 GGTGLGLAISRQLVRLMGGEIHVESRRDIGSAFSLEL 699



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 73/205 (35%), Gaps = 21/205 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
              + +  E  R+  Q+ D + E       ++E RV+   A L   +L G   E+AE   
Sbjct: 262 ARAVEQFLEDRRQRRQAEDALKELNA----ELEARVAQRTAELS-TALAGQAGEIAERQH 316

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-EGIVFQKAIGESR- 241
               L    +    + +++  +V+ ++      +  + + K  E   G   ++ +G S  
Sbjct: 317 AEDALRESENFLNSIIENIPDMVFVKEAE---TFHYVRFNKAAEQLLGYRREELLGRSVH 373

Query: 242 KLF--KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL---------NSFGEAG 290
            LF   E     +   + LE      +           ++V  +               G
Sbjct: 374 DLFPVDEANFFALKDRAVLESRRMIDIPEEPVHTRHGLRLVHTMKIPIVDMRGEPRFLLG 433

Query: 291 IAIDVSKEITVNDQLTHTYEILHNL 315
           I+ D++++     +L    E L ++
Sbjct: 434 ISRDITEQKQAEAELRRYREHLEDM 458


>gi|119471909|ref|ZP_01614217.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Alteromonadales bacterium TW-7]
 gi|119445282|gb|EAW26572.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Alteromonadales bacterium TW-7]
          Length = 928

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 14/247 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            LT   +  + A+ +K+ F+  +S+ELR+PL  ++GFT  L  +    LN  Q  Y++ I
Sbjct: 275 QLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKT---PLNKHQKDYLDTI 331

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L+ +++DILD + ++AG M+L      L D +NEV   +A   HE  + + +  
Sbjct: 332 MLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHEKQLELSIYI 391

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNGDFIFSVKNNGS 728
           + ++      D  R  Q+   +LSNA+ F+ +GS  V +       ++   + SV + G 
Sbjct: 392 NPQVPDDLTGDPTRFKQVLINLLSNAIKFTEQGSIKVDISYRLLDEESASVLVSVTDTGV 451

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN- 785
            IP D   S+F  F        R   G GLGL I +  +    G +S++S+    T    
Sbjct: 452 GIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMNGRISLNSAPGNGTCFTF 511

Query: 786 ---CRIP 789
               R+P
Sbjct: 512 NSVFRLP 518


>gi|148654588|ref|YP_001274793.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566698|gb|ABQ88843.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 695

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 161/382 (42%), Gaps = 28/382 (7%)

Query: 423 VDLETKYNTLVKV---QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +     Y  L++     G+    +  G+A+    GR+   NPA+ ++W      +    +
Sbjct: 319 LRRALHYQQLLETSTHLGQVFSSIPGGLALMDQQGRVLRHNPAWLTIWGLPSGSMRDPFY 378

Query: 480 IRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           +                      A       E +SL   L      ++  S+    +  +
Sbjct: 379 VPLDLVPLLLPRLRDPLALTGMCAEGQRAPTEVQSLLVQLTSPHQELMLLSVPTRDSFGS 438

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   + +   V  ER           AD +K+ F+  +S+ELR+PLT+I+G+T+LL   +
Sbjct: 439 LTGRLWIVSDVTRERE----------ADRLKSEFLSIISHELRTPLTSIMGYTELLLARE 488

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                +++ ++V+ +   +  L  +V D+L +  ++AG ++LN   + L  +++++   +
Sbjct: 489 FSP--AERREFVQTVYNEANHLYQIVEDLLGVTRLEAGNVRLNQWAVSLRQIVSDLTAQL 546

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--- 715
             ++   +  + +     L    ADR ++ Q+   +++NA+ +S  G  + L  + +   
Sbjct: 547 NNQISGKHTML-IDIPPHLPPVYADRDKVRQVLVNLITNAVKYSPNGGEIRLTISDNVEL 605

Query: 716 ------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                       +V + G  I  +    ++ RF    +   RR  G GLGLSI ++ + L
Sbjct: 606 PPDHPRGKFVRVAVSDQGIGIAPEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVEL 665

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +   S     +T    +P
Sbjct: 666 HGGRIWAESKLNKGSTFYFTLP 687



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 83/282 (29%), Gaps = 35/282 (12%)

Query: 72  YHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKAT 131
           +  ++ +     I          I    +  ID P   T                L    
Sbjct: 124 HQMIIGDEEQALIDALSPLLAAAIASSSNTNIDTPILTTRQQR--------VLDALRAEL 175

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
           E     G+    +       A+   G  +G+        +  +  E  E TL+  +    
Sbjct: 176 EAPLDLGELLTFLLR----WALDATGAEAGA--------IGVVDRERGEVTLQAYEGYGA 223

Query: 192 ISVFK-VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
             + +    ++     W    AG +     +      +    +Q            E++ 
Sbjct: 224 NPLSRDAFGETRRRWNWSVGVAGKVARTGRAILLRDVSHDPDYQA--------LNPEVRA 275

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL----T 306
            +      ++     V  L+   + ++    V        +A++  +      QL    T
Sbjct: 276 ELAMPIGADQPLA--VLILDSPRSTAFGDGEVAFVKALCDLAVNPLRRALHYQQLLETST 333

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           H  ++  ++   +A+ DQ   +  HN +++ +W +    +  
Sbjct: 334 HLGQVFSSIPGGLALMDQQGRVLRHNPAWLTIWGLPSGSMRD 375


>gi|78047771|ref|YP_363946.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036201|emb|CAJ23892.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1137

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 141/896 (15%), Positives = 285/896 (31%), Gaps = 136/896 (15%)

Query: 9   GIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKK------VNETYSFL 62
                +E+       +   G   G L   +      + ++     +      + +    +
Sbjct: 101 AAAMALELERWSCSPVLQTGEQVGALYIGVADSTADVSEQRRSNSRDSFLLMLEDALQHV 160

Query: 63  SEICDQLSKYHSLLTENNCL------TIVWDGKD---------ETPEIIGQLHQRIDIPQ 107
           S+    +     LL E+          +  DG           + P + G          
Sbjct: 161 SDPRQIIDTSVRLLGEHLQANRCAFGLVAADGSTIHVISDHVQDMPSLQGDFPLEAAQGL 220

Query: 108 TDTDLLSFENWLKFHH--YIKLSKATEKLRKEGQSFDLVAET-QNDCAIKIEGRVSGS-- 162
            D  LL+   W               E+ R+ G    L     ++D  +   G    +  
Sbjct: 221 RDA-LLANRPWFTTDAMAPGAPDYVAEQYRRSGLRASLAIPLHKHDRLVAAIGVHQRAPR 279

Query: 163 ---CAFLRILSLDGIYS-ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
               A + ++ L      E  +     ++L+ + +  + L D+L  +++  D  G   + 
Sbjct: 280 RWLSAEIELVRLVVARCWESMQRAKAQQQLAANEARLRRLADTLPQIIFIADPDGRPHYF 339

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKE---EIKKRMISSSALEKNFCETVSTLEHGNNK 275
           N  + + T  +    + A               +   ++         E       G ++
Sbjct: 340 NQRWYEYTGLDPSSNEDAAWHRAHTADGLRLSEQAWSLALKGQRALEVECELLRHDGQSR 399

Query: 276 SYKIVR--VLNSFGEA----GIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQN 325
            + +    V    G      G   D+    T   QL         +   +   I + D  
Sbjct: 400 WHLVRALPVRGDDGSISEWIGTYTDIHHRRTFEQQLRESEVRFRALCETVPAMIWMADAQ 459

Query: 326 RYLQFHNRSFVELWE------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
               + N  +           +D  +      +D      R  +   + L  +      +
Sbjct: 460 GDCVYWNPRWYNFTGQGEDQALDQGWWDVMHPDDA----ARVRHAFEQALEQRGEFLAEY 515

Query: 380 SVYKSSETHKDTWHL--------PNGQTLHVIVTSNPRGGTIWMFENLT-----VQVDLE 426
            V +    ++  W +         +G+ L          G I    +++           
Sbjct: 516 RVRRHDGQYR--WCIDTASPHFASDGRFL----------GHIGSLTDISERKHIEDATAS 563

Query: 427 TKYNTLVKVQGETIDHLSEGVAV-FGPDGRIKL-----------------SNPAFRSLWK 468
            +    +   G  +  + + +A+     G I L                 S P F   ++
Sbjct: 564 DRAILSLITTGAPLPVVLDAIALSVEARGEIPLYCSVMVRDEIRHTLSFGSAPHFPIEYR 623

Query: 469 TEENRLSPG-----------------THIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
                   G                        A+ S ++  S    + A  +T      
Sbjct: 624 GHFEPSPIGPEGPPCALSAHLGRQVICSDLQADASFSSHHAISATMGIAACCVTPILASN 683

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER------------ALTEKN 559
             + GTL +  D       +P    Q M    +    +  ER            A T   
Sbjct: 684 GQVLGTLNIYYDRP----HLPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETAAR 739

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N    + +  I  S+  
Sbjct: 740 AQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPAN--LGRGLVIIERSARA 797

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LG 678
              +++D+LD++ + +G ++L      +  L+  V + +        I +++ +      
Sbjct: 798 QTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPTALARKIALELDAPCDGEL 857

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++ G  I  D    V
Sbjct: 858 WFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQDTGIGIAADFLPHV 917

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
           F+RF        RR  G+GLGLSI    ++LHGG +  SS+ +         +P +
Sbjct: 918 FDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLPFQ 973


>gi|323496760|ref|ZP_08101805.1| histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323318185|gb|EGA71151.1| histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 1098

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/634 (16%), Positives = 230/634 (36%), Gaps = 66/634 (10%)

Query: 211 QAGDILWANISYKK--NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
            +  I +AN S+     T    I+  K      +  +    + +++S     +    V  
Sbjct: 43  DSHAIFYANPSFVDYYKTPLNQIIGCKVSDFFSRYTETPFIQALLNSQDAHLSIPLNVKI 102

Query: 269 LEHGNNKSY--KIVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHNL------- 315
              G +K     +  +     ++   +    DV++   V ++L H+   L  L       
Sbjct: 103 AVDGEDKWLSLHVEVMNQKAQQSKYYVLRQTDVTQIHLVREELRHSNAQLSQLVSSQSRK 162

Query: 316 ------TVAIAIFDQNRYLQFH----------NRSFVELWEIDLAFLATNPSNDELLEFL 359
                  + + +F+Q+                N + ++L+      +    S   LL   
Sbjct: 163 LHQHDTQIGV-MFEQSLDNMLLLDDDLTLIDINDAALKLFGRSKQKIIGL-SVSSLLNDF 220

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
                       +  +E         + H     L +G   ++ + ++ +   +    ++
Sbjct: 221 DDQVIKASLATAEMHREVPLDTMLKVKNHIGLSSL-SGSVRYITIRNHDK--IVLTLRDV 277

Query: 420 TVQVDLETKYNTLVKVQGETIDHL-------SEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
             Q  ++ +           + +L         G+  +         +     ++  + N
Sbjct: 278 HSQHLVQKELRRSQSELERVLRNLNLATQAGGIGIWSWDFTTNELAWDERMYEMYGVDPN 337

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELL---SDSVLE 527
                  +          Y      +     ++ F+ E +     G +  +   +D + +
Sbjct: 338 NCENNYAMWQERVLDEDIYPAEQALNDARERLSQFNAEFRIQLPSGEIRWIKAAADVLFD 397

Query: 528 YSI-IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           ++   P+         +++T    A+     ++E    A E K+ F+ ++S+E+R+P+  
Sbjct: 398 HNGENPIGMGG---VNIDITKEKNAQENFRHESETALAASEAKSMFLANMSHEIRTPMNG 454

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   LL  ++   LN++Q   V  I  S+  LL+++NDILD + ++AG M L    + 
Sbjct: 455 VVGMLSLLSETE---LNTEQKNMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVE 511

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG 705
           L  L+      +  +     I + +  D  L   +  D  RL Q+   I+ NA+ F+   
Sbjct: 512 LQKLIERTLDVLCLQASNKGIELYLTYDANLPKVIMSDSVRLSQVLLNIIGNAVKFTDSN 571

Query: 706 ----STVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
                 V + A  ++ +        V++NG  + E+  K +FN F        R   G G
Sbjct: 572 DDVKGKVWVSATLNDHEIAPYIEIIVEDNGIGMTEEQMKRLFNAFTQADTSTTRLYGGTG 631

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGLSI  S + L GG++ + S     +     +P
Sbjct: 632 LGLSITNSLLELMGGNIKVDSHHGSGSRFYIELP 665


>gi|82751280|ref|YP_417021.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus RF122]
 gi|82656811|emb|CAI81240.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus RF122]
          Length = 554

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 709

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/535 (17%), Positives = 193/535 (36%), Gaps = 49/535 (9%)

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLT----VAIAIFDQNRYLQFHNRSFVELWEI 341
            G   ++ D+ +       L  + + L        +    ++      F +    E+  +
Sbjct: 52  AGVIAVSRDIGERKRTEQALRQSEQRLQMAQRAGKIGTWEWNVATGEVFWSEGIWEILGL 111

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQT 399
           ++      P     ++F+          +     E +  V    + + D +     +   
Sbjct: 112 EIG--TEEPGVKPWVDFIHPN-------DRPRVMEGVEKVLAEGKEYYDEFRIVRRDNTV 162

Query: 400 LHV----IVTSNPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           + V     +  +  G     + +  +++ +   E       +     + H      +   
Sbjct: 163 IWVASKGQIIRDAEGQAECFLGVNIDISERKQAEEVRQESEERFQAFMAHSPAAAWITDA 222

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDER 511
           DG++   +P + + ++              I  T    ++      L   I T +  ++ 
Sbjct: 223 DGKVIYLSPTYVNTFQLFTQ--------DAIGKTAFELFDLEIATQLLNNIQTVAKTNQV 274

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQ-------------TMLTFVNVTDSVRAERALTEK 558
                    L  ++ ++ +   P A                       +           
Sbjct: 275 LETIEMAPRLDGTIGDFLVYKFPIAHLSGQSLVGGVAIDVTSRRRAEEEREELLLREQAA 334

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+ IK+ F+  +S+ELR+PL  I+G+  LL+T +L     K++  +E I  ++ 
Sbjct: 335 REAAETANRIKDEFLAVLSHELRTPLNPILGWIKLLRTHQLS--EEKKAIALETIERNAK 392

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +   L+ D+LD++ +  G + LN S++ L   +    +++A      +I+I       + 
Sbjct: 393 LQTQLIADLLDVSRILQGKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIAPDVQ 452

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            F+ D  RL Q+   +L+NA+ F+  G  V +K    N      V + G  I  +    V
Sbjct: 453 LFMGDASRLQQVVWNLLTNAVKFTPTGGEVKIKLESTNTYTQIQVSDTGKGITPEFLPYV 512

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
           F  F        R   G+GLGL+IV   + +HGG V   S  ++       R+P 
Sbjct: 513 FETFRQADSATTRKFGGLGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLPL 567



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 94/270 (34%), Gaps = 37/270 (13%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
           R+R   A + +E    +++   ++  +   +       + W        I   L   I  
Sbjct: 64  RKRTEQALRQSEQRLQMAQRAGKIGTWEWNVATGE---VFWSEG-----IWEILGLEIGT 115

Query: 106 PQT-DTDLLSFENWLKFHHYIKLSKATEKLRKEGQS----FDLVAETQNDCAIKIEGRV- 159
            +      + F   +  +   ++ +  EK+  EG+     F +V        +  +G++ 
Sbjct: 116 EEPGVKPWVDF---IHPNDRPRVMEGVEKVLAEGKEYYDEFRIVRRDNTVIWVASKGQII 172

Query: 160 --SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
             +   A        G+  +++E     +        F+          W  D  G +++
Sbjct: 173 RDAEGQAEC----FLGVNIDISERKQAEEVRQESEERFQAFMAHSPAAAWITDADGKVIY 228

Query: 218 ANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            + +Y     T  +  Q AIG+ + +LF  EI  +++++        + + T+E      
Sbjct: 229 LSPTY---VNTFQLFTQDAIGKTAFELFDLEIATQLLNNIQTVAKTNQVLETIEMAPRLD 285

Query: 277 ----------YKIVRVLNSFGEAGIAIDVS 296
                     + I  +       G+AIDV+
Sbjct: 286 GTIGDFLVYKFPIAHLSGQSLVGGVAIDVT 315


>gi|209809121|ref|YP_002264659.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010683|emb|CAQ81070.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 891

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 144/292 (49%), Gaps = 16/292 (5%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           I+S     K+   ++++ SD   E+++       +      +++    E  +    E   
Sbjct: 324 ISSMALIEKNHDYSIQIKSDGNDEFTLF------SKNLNALISERAMNEDKIVGAKEEAE 377

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K++F+ ++S+E+R+PL  IIG + +L  +KL  +   Q  Y+  I  SS  LL L
Sbjct: 378 QANLAKSTFLANMSHEIRTPLNGIIGMSGILSETKLTPI---QHDYLNTIETSSQTLLIL 434

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILD++ +++G + L+  +  L +++ +    I +K +E ++ + +     L  S + 
Sbjct: 435 INDILDISKIESGNLSLHPHSTDLREIIFDTVSIIISKANEKHLNLIINIPPDLPSSLLL 494

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSV 738
           D  RL QI   + SNA+ F+ KG     V      +N  +   SV ++G  I ++   S+
Sbjct: 495 DDHRLRQILMNLASNAVKFTPKGHVQLDVEFTKKENNTVELTISVSDSGVGIEQNKLNSI 554

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  FV       R   G GLGL+I +  ++L  G  ++ S+    +T +  +
Sbjct: 555 FEPFVQEDSSITRQFGGTGLGLAISKQLVDLMDGEFTVKSTKGEGSTFSFSL 606


>gi|90021056|ref|YP_526883.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89950656|gb|ABD80671.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 685

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/521 (20%), Positives = 200/521 (38%), Gaps = 41/521 (7%)

Query: 296 SKEITVNDQLTHTYEILH-NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           ++   + +       I   +       +D        N  F          +    S  +
Sbjct: 21  ARLRAMQEVRQRYERIFRGSHGYGFVDWDFKNRKMDWNGGFWAYLGYGETDMEHISSPGQ 80

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ------TLHVIVTSNP 408
            +E++ +        +       +    K   + +  + +   +       + V    + 
Sbjct: 81  FMEYVHTD-------DRAKVNNFVLGELKGVGSGELVFRIRKKKGGYIWAEVRVDNVRDS 133

Query: 409 RGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFR 464
           +G   +M     ++T Q   E             I   ++G+  +  D G  + SN  + 
Sbjct: 134 QGRVSFMSGVVFDVTKQKQTEQALLISEARHARIIQSSNDGIWEWSADHGGFQFSNRCW- 192

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-------SFDDE--RKSLQ 515
            L   +++       +  + A   R + E    +LF   +         FD E   K   
Sbjct: 193 ELLGYDQHDDELNQGVDKVQAWRDRMHPEDG--ELFDRTLEKHIKGEGPFDVEYRIKGKN 250

Query: 516 GTLELLSDS---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           G    +        + +  PL  +    T +++T   +AE  + +  E   KA++ K+ F
Sbjct: 251 GNWRWIRGRGQLAFDAAGQPLRMSG---TNMDITQLKQAEEKVVKAKELAEKANKAKSEF 307

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+ELR+PL  I+GF  L +  K  +LN  Q + +  I  +   LL L+ D+LDLA 
Sbjct: 308 LSSMSHELRTPLNAILGFAQLFELDK--NLNPAQRENIGEIEKAGKHLLELIGDVLDLAK 365

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIF 691
           ++AG M      +    L++E    +     +N + I V   +    S  AD  RL Q+F
Sbjct: 366 IEAGKMDFELEQLNPMRLVDECIPLMRPLAVKNRVEINVHNFELGNASVRADSVRLKQVF 425

Query: 692 SKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRG 749
             ++SNA+ ++ K   V I+ +  + G    SV++ G  IP    K +F  F    A RG
Sbjct: 426 INLISNAIKYNRKDGRVDIVFSETEEGHLRVSVQDTGFGIPLKQQKYMFQPFNRLGAERG 485

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  G G+GL I    +   GG +  SS +   +    ++P 
Sbjct: 486 EIEGSGVGLVITRQLVEQMGGELGFSSDEGKGSKFWVQLPL 526


>gi|312830070|emb|CBX34912.1| sensory box protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|329727161|gb|EGG63617.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329733268|gb|EGG69605.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 546

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 189 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 248

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 249 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 295

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 296 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 341

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 342 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 399

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 400 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 458

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 459 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 518

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 519 EAHQGNIEVNSQVGKGSTFKVIL 541



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 200 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 252

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 253 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 310

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 311 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 369

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 370 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 422


>gi|260175189|ref|ZP_05761601.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315923421|ref|ZP_07919661.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313697296|gb|EFS34131.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 391

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 185/382 (48%), Gaps = 23/382 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K      + G  + ++   + +   D ++  +N   ++  +        G  ++   A 
Sbjct: 10  RKLERTSHIAGAILKNVHAFILLIDNDFKVLKTNYYQKTGTRKGTEEKRVGDLLQCRNAL 69

Query: 487 CSRY----YNESDGWDLFAAIITSFDDER--KSLQGTLELLS--------DSVLEYSIIP 532
            +      ++      +  AI  +F+  R    L+ TL +++        D+V+  S   
Sbjct: 70  AAEGGCGTHSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGSYFL 129

Query: 533 LPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           L   + M +T  +VT   +AE+ L    E   KAD   ++F+ ++S+E+R+PL  I GF 
Sbjct: 130 LNEEENMVITVHDVTRRKQAEKELQLAKEKAEKADISNSAFLANMSHEIRTPLNAITGFA 189

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L      +   +++QY E I  ++ +L+ LVNDILD++ ++AG ++   +T+ +N LL
Sbjct: 190 EVL---GSATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNQLL 246

Query: 652 NEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++++Q    ++++   +I++I++          DR R+ Q+ S    NA+ F+ +GS + 
Sbjct: 247 SDLQQLFQMRVNDAGGKIQIIAEPSCSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS-IR 305

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           L     N +  F VK+ G+ IP +    VF RFV       ++G GLGLSI ++ +   G
Sbjct: 306 LGYEARNTELYFYVKDTGAGIPAEKLPDVFERFVKL--NKDKKGAGLGLSISQTIVAKLG 363

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +   S +   +T    IP +
Sbjct: 364 GQIGADSVEGEGSTFWFTIPYR 385


>gi|255021586|ref|ZP_05293629.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968974|gb|EET26493.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
          Length = 1018

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/718 (16%), Positives = 245/718 (34%), Gaps = 109/718 (15%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-- 225
           + +       L +   +  +L+   ++ + + DS   L+   D     +  N ++ +   
Sbjct: 150 LQARVDAERLLTQLRAREVELTRERALLQTVIDSTPSLIAAIDDEQRFILVNKAFAQLLG 209

Query: 226 --TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
              E       +A+  +  L      +  I S+         +     G  + + +  + 
Sbjct: 210 KSPEALSRENLRAVLPTPVLVAYGALQAQIRSTGKPAREKLVLPL---GERQWHLLTTMA 266

Query: 284 NSFGEAGIAI-------DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN---- 332
              G  G  +       D+++   +N  L    +I        A       L   N    
Sbjct: 267 PLLGPDGQRVGFVVVVQDMTEIDALNADLHRLQDI-QRRGERFARQGA-WSLNLANGEMT 324

Query: 333 --RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
               F  L  +       +    +L   +       +          +    +     + 
Sbjct: 325 ISEGFARLLGLPPE--TRSIPQSQLRRRI-------DPAYHAAIDAALQQSLRDGGAFRF 375

Query: 391 TWHL---PNGQTLHVIVTS---NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            + L    NG    +       +   G +     +T  +  E +   L + Q + +  L+
Sbjct: 376 DYPLVRQGNGPRTWLRARGDLVHDDDGKVVAMVGITQDITAELEARQLRESQEKLLAGLN 435

Query: 445 EGV----------AVFGP--DGRIKLSNPAF----RSLWKTEENRLSPGTHIRNI----- 483
           E V           V+    D  + ++   +      L+  + +       I N+     
Sbjct: 436 ETVQSFLREVDSRMVWDRMLDQLLAMTGARYGFLGEVLFGIKPDPCLKIHAITNLSWSPA 495

Query: 484 -----AATCSRYYNESDGWDLFAAIITSF------DDERKSLQGTLELLSDSVLEYSIIP 532
                A   +      +  +L  A++ S       D   +   G        +  Y  IP
Sbjct: 496 SDALYAQVLAGDMLFCNPDNLIGAVMRSRAPVIVPDMRHEQRCGGTPPGHPELHNYLGIP 555

Query: 533 LPNAQTML-------------------------TFVNVTDSVRAERALTEKNEALRKA-- 565
           L   + ++                         T   +  ++R   A  +  + L ++  
Sbjct: 556 LFQGEELVGVVGVANREEGIDESLLNLLEPFFSTCAIMIVTLRQREAQRQYEQRLVESKE 615

Query: 566 -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                ++ K+ F+  +S+ELR+PL +I+GF  LL TS+   L+ +Q  +VE+I  +   L
Sbjct: 616 QAERANQAKSQFLSSMSHELRTPLNSILGFAQLLSTSRREPLSPRQQGFVEHIRDAGQHL 675

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L+L+ND+L+LA ++AG +  +   + L  LL E  + +A    E ++++           
Sbjct: 676 LSLINDVLNLARIEAGELTFSPEVLSLAALLRETSEMVADLARERDVQLLETLGDDPLWV 735

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDNGDFIFSVKNNGSSIPED 733
             D  R  QI   +LSNA+ ++  G  V++++       A        ++ + G  IP D
Sbjct: 736 CVDLTRTRQILLNLLSNAIKYNRPGGRVLIRSLAPIPERAERPVCLGIAISDTGIGIPAD 795

Query: 734 MCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +F  F       G   G G+GL I +  +   GG +   S +   TT    +P+
Sbjct: 796 RQHRLFRPFERLGQENGPIEGTGIGLMITKELVERMGGEIRFESREGEGTTFFVFLPA 853


>gi|303245459|ref|ZP_07331743.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302493308|gb|EFL53170.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 576

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/560 (19%), Positives = 211/560 (37%), Gaps = 89/560 (15%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFD-QNRYL--------QFHNRSFVELWEIDLAFLA 347
           +     ++L     +L     AI + D +   +            +    L  +  A L 
Sbjct: 37  ELKRRLEELERFRSLLEQTGEAIFLVDGRTGRIADTAGAAGVMLRQEREALLGLPFAALL 96

Query: 348 TNPSNDELLEFL---RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
              + + L        +A +L   L     K        ++   + T+ +  G+   +  
Sbjct: 97  PMEAVEHLHGLFSGDFAAGRLETVLTRPGGKG-------TTPAVEMTFRMAKGEDGPI-- 147

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                   + +  +++ +   E       +     +++ +EG+     DGR+  +NPA  
Sbjct: 148 -------AVIVARDVSERKKSELALRRAEEKYRGIVENAAEGIFQSSLDGRLISANPAVA 200

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--------------- 509
           ++      R       R + +   +     D      A +  +D                
Sbjct: 201 TILGYASPREMM----RRVKSIIDQTVAREDDRQRIRAELERYDQVKNLEVQLVTKSGDL 256

Query: 510 --------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKN 559
                     +   G  E    S+ + +I      QT+L + +  +   AER   LT  N
Sbjct: 257 IWGLINARRIRDAAGEAERFDGSLQDVTIRKQAE-QTLLRYHDELERRVAERTAELTRAN 315

Query: 560 EALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT------SKL 599
           E L                 +  K+ F+  VS+E+R+PLT+++GF  +++       ++L
Sbjct: 316 ERLTHEVTIRKRAEEAADAANRAKSEFLSMVSHEIRTPLTSVMGFAVIIEKRLDQLFNRL 375

Query: 600 GSLNSKQSQYVE-------YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
              + +Q +  E        I +    L +L+ND+LDLA ++AG M   +  +   +++ 
Sbjct: 376 LGDDPRQRRQAEQIMENLGIIVSEGERLKHLINDVLDLAKLEAGKMAFKHERVDPAEVVR 435

Query: 653 EVKQSIA-TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V  +          + +K    G+L   + DR RL+Q+   ++SNA+ F+ +GS V  +
Sbjct: 436 HVMSASEGLLAATPRVALKTSIQGRLPEVIGDRDRLIQVLVNLVSNALKFTEQGS-VTCR 494

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769
           A   +G  +  V + G  IPE     VF +F         + +G GLGL+I +  +  HG
Sbjct: 495 ARTADGYVVIDVADTGIGIPEAEQHKVFEKFNQIGATLTNKPKGTGLGLAICKHIVESHG 554

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +S  S     +T    +P
Sbjct: 555 GRISYVSRFGSGSTFTFALP 574



 Score = 44.2 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 85/274 (31%), Gaps = 28/274 (10%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRD-----------QAGDILWANISYKKNTETEGIV 232
           + K+    +  F+ L +     ++  D            AG +L              ++
Sbjct: 37  ELKRRLEELERFRSLLEQTGEAIFLVDGRTGRIADTAGAAGVMLRQEREALLGLPFAALL 96

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
             +A+     LF  +     + +         T   +E     ++++ +  +      +A
Sbjct: 97  PMEAVEHLHGLFSGDFAAGRLETVLTRPGGKGTTPAVEM----TFRMAKGEDGPIAVIVA 152

Query: 293 IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFL 346
            DVS+       L    E    I+ N    I     +  L   N +   +         +
Sbjct: 153 RDVSERKKSELALRRAEEKYRGIVENAAEGIFQSSLDGRLISANPAVATILGYASPREMM 212

Query: 347 ATNPS-NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
               S  D+ +       ++  +L      +N   V   +++    W L N + +     
Sbjct: 213 RRVKSIIDQTVAREDDRQRIRAELERYDQVKN-LEVQLVTKSGDLIWGLINARRIRDAAG 271

Query: 406 SNPRGGTIWMFENLTVQVDLET---KYNTLVKVQ 436
              R       +++T++   E    +Y+  ++ +
Sbjct: 272 EAER--FDGSLQDVTIRKQAEQTLLRYHDELERR 303



 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 81/275 (29%), Gaps = 30/275 (10%)

Query: 61  FLSEICDQLSKYHSLLTENNCLTIVWDGKDET-PEIIGQLHQRIDIPQTDTDLLSFENWL 119
            L    ++L ++ SLL +      + DG+     +  G     +   +     L F   L
Sbjct: 37  ELKRRLEELERFRSLLEQTGEAIFLVDGRTGRIADTAGAAGVMLRQEREALLGLPFAALL 96

Query: 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQND-----CAIKIEGRVS----GSCAFLRILS 170
                  L          G+       T+        A+++  R++    G  A +    
Sbjct: 97  PMEAVEHLHGLFSGDFAAGR--LETVLTRPGGKGTTPAVEMTFRMAKGEDGPIAVI---- 150

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
              +  +++E       L      ++ + ++    ++     G ++ AN +         
Sbjct: 151 ---VARDVSERKKSELALRRAEEKYRGIVENAAEGIFQSSLDGRLISANPAVATILGYAS 207

Query: 231 IVFQ-----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVL 283
                      I ++     +  + R       +    E     + G+         R+ 
Sbjct: 208 PREMMRRVKSIIDQTVAREDDRQRIRAELERYDQVKNLEVQLVTKSGDLIWGLINARRIR 267

Query: 284 NSFGEA----GIAIDVSKEITVNDQLTHTYEILHN 314
           ++ GEA    G   DV+        L   ++ L  
Sbjct: 268 DAAGEAERFDGSLQDVTIRKQAEQTLLRYHDELER 302


>gi|116873864|ref|YP_850645.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742742|emb|CAK21866.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 591

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 151/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGESEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I T+F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIETTFETKTMQQKEIILYFPREMILDASVSPILAEDGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EILL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I       N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENIELVDVDEVIEQSARTIFEMATGKN 462

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I + V         +  DR +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IHVSVPEKNITPVIIETDRDKLQQILINLLSNAINYTPLDGKVEVKLIEHEAEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea sp. MED297]
 gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297]
          Length = 767

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 129/245 (52%), Gaps = 9/245 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E+ +  +   E ++ F+  +S+E+R+PL  ++G  DLL  ++   L+ +Q +Y+E 
Sbjct: 383 RVLREERQKQQLKAEAQSYFLAQISHEIRTPLNGVLGTVDLLDQTQ---LDEEQKKYIET 439

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LLNLVND+LD + ++AG M +    I + DL     +    + ++ ++  K+ 
Sbjct: 440 IQSSGKSLLNLVNDVLDYSRIEAGKMTVVEEQIHIQDLFRHQVELFRAQANQKSLNFKLT 499

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD--FIFSVKNNGS 728
            D  +  ++ +D QR+ QI + ++SNA+ F+ +G  V+ L + R NG       V++ G 
Sbjct: 500 IDPNVPEWILSDAQRIRQIATNLISNAIKFTDQGQVVVSLSSTRRNGHPYLSIQVRDTGI 559

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I       +F+ +       R    G GLGL+I +  ++L GG +++ S     +    
Sbjct: 560 GIASHEIAHLFDAYQQVDVGKRRVYGGTGLGLAISQQLVDLLGGTITVQSQQNQGSEFTV 619

Query: 787 RIPSK 791
           ++P K
Sbjct: 620 QLPLK 624


>gi|260893731|ref|YP_003239828.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865872|gb|ACX52978.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 546

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/276 (26%), Positives = 138/276 (50%), Gaps = 7/276 (2%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYE 579
           S  V+  S +    A  +    ++ +   AER   L + NE L +A++ K+  + +VS+E
Sbjct: 270 SGEVMVLSQVLEKVAGQLWESHHLLEQKVAERTKELQKANEELARANQFKSEILANVSHE 329

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT ++ +T++L     G L  +Q + +E I+ SS  LL  + D+L +A ++AG  +
Sbjct: 330 LRTPLTAVLAYTEMLLDPTTGPLTPEQRECLENIADSSKELLLEITDLLQMARLEAGRKE 389

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    + +++ EV   +     +  I++    +      +ADR ++  I + ++SNA+
Sbjct: 390 LFYEPFDMAEVVQEVFSLLGPLARKKRIKLCGPEERGEWWVLADRAKVKHILTNLVSNAI 449

Query: 700 DFSSKGSTVILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
            F+S+G  V +K +         +  V + G  I     + +F +F     +   +G GL
Sbjct: 450 KFTSEGGKVTVKLSYGFDTTRYMLVKVTDTGVGIDPAEQEVIFEKFYR--SKKHSQGTGL 507

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL++V   + LHGG V + S     ++    +P KE
Sbjct: 508 GLTLVRELVQLHGGRVWVESIPGQGSSFYFTLPLKE 543


>gi|163759054|ref|ZP_02166140.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283458|gb|EDQ33743.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 642

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 161/374 (43%), Gaps = 10/374 (2%)

Query: 425 LETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +E K+  + +V  +    +D +   +      G +       +         ++    I 
Sbjct: 223 MEPKHAAMEQVAADVPQILDLMPGLITRHNAHGNVVCVAGRDKHACLGWIGDVTGRGFIN 282

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN---AQT 538
            I       + ++            F+   + +    + +  + L  S    P+   A  
Sbjct: 283 RIHVADRIAFLDAFDALRLGESRREFELRFERIDAAGQFVH-AALSLSAEHGPDGSFAGV 341

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +   +++D V      +   +    A+  K  F+  VS+ELR+PL  I+GF+D+L    
Sbjct: 342 FVQSRDISDQVAGRLRASTMADEADMANASKTRFLAAVSHELRTPLNAILGFSDILAREM 401

Query: 599 LGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            G   + +Q +YVE I  S   LL LVN +LD++ +++G  ++     +L++++      
Sbjct: 402 FGKFNDERQREYVELIHQSGEHLLALVNTMLDMSKIESGRYEVFVEPFLLSEVVERCDAM 461

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +  +  + +       LG  VADR+ + QI   ++ NA+ F+  G  + + A    G
Sbjct: 462 LRLQAEQRGVVMTRRMAPGLGEVVADRRAVQQILINLIGNAIKFTEAGGVINVDAGIHEG 521

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
             + SV + G  IPE+    +   FV   +       G GLGLS+V+  ++LHGG  +I+
Sbjct: 522 LLVLSVSDTGIGIPEEKLALIGQPFVQVQNGLARHFEGTGLGLSLVKGLVDLHGGQFAIA 581

Query: 776 SSDEGVTTINCRIP 789
           S +   T +  R+P
Sbjct: 582 SQEGEGTVVTIRLP 595


>gi|150008033|ref|YP_001302776.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|149936457|gb|ABR43154.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
          Length = 622

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/630 (17%), Positives = 235/630 (37%), Gaps = 49/630 (7%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANIS----YKKNTETEGIVFQKAIGESRKLFKEEI 248
           S  +++ +     +   D+   ++    +    Y            +A+    K + +  
Sbjct: 12  SGLEMIMEKSPDTIVLVDRNLTLVKVISAKDDYYHYLANNCIGKQPQALFPDGKNYDQYE 71

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL---NSFGEAGIAIDVSKEITVNDQL 305
             R       E+      S       K+Y  +      N         +VS   T  +  
Sbjct: 72  IYRAAVKRVFEEQVKVDFSFEVSFEGKNYYYLSQASLFNEELVIVYTRNVSSLKTEKNLQ 131

Query: 306 THTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSND---------- 353
                IL  L + + + D +      + N    E+  I+   +  +   +          
Sbjct: 132 ELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGIETREIEGHDDFEVNYNALMTAE 191

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           E LE   +  K      +K   ++    Y+  E  K    L NG+ L            +
Sbjct: 192 ERLETDMNVIKTGLTARFKGKVKSASGDYRDIEVAKYPISLNNGKPL-----------VL 240

Query: 414 WMFENLTVQVDLETKYNT--LVKVQGETIDHLSEGVAVFGPDGR------IKLSNPAFRS 465
            ++ ++T ++  E       ++      I  +        PD        +   N    +
Sbjct: 241 ALWRDITSELATENTLRRTRILTKMALRISDIRTCSIFIDPDSTHNFKDSVVTLND--WN 298

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
               +   +S G  I         +Y+          I  +  + R    G  E +   V
Sbjct: 299 TMSEDMIEVSWGQFISRAHPDDQEHYHNMFTRLCRGEISEARIEARMLFPGKKEYVWREV 358

Query: 526 LEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                      +    +    N+ +    E +L E       AD++K+ ++  +S+E+R+
Sbjct: 359 FATVYERDDKGRPSVILGCSTNIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRT 418

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I GF++L+        + ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y
Sbjct: 419 PLNAITGFSELMA---FADTDEERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITY 475

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + +++L++ +  S   ++    +++ +  +     F  D  RLLQ+ + +++NA+  +
Sbjct: 476 EQLDVSELMDTIYASAKLRVP-GGVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKNT 534

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS  +    + +    F V++ G  I ++  K VF+RFV         G+GLGL+I +
Sbjct: 535 KEGSITMGYTIQPDDQLRFYVRDTGIGIDKEKLKDVFDRFVKINDY--MEGIGLGLAICK 592

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +   GG + ++S     +  +  +PS E
Sbjct: 593 GLVVKMGGSIHVTSELGVGSEFSFILPSHE 622


>gi|120603530|ref|YP_967930.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris DP4]
 gi|120563759|gb|ABM29503.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris DP4]
          Length = 1535

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 130/644 (20%), Positives = 237/644 (36%), Gaps = 50/644 (7%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI---SYKKNTETEGIVFQ 234
             AE   K  +L      +  LFD++   +   D++  +   N    +       +     
Sbjct: 751  NAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGRPL 810

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI- 293
            + I     L + +   + ++    E    ++ + L  G     +I  V +  G     + 
Sbjct: 811  QQIASC--LVEPDNLFKSLALGLSEGGTHDSEARLTDGRWCQQRIHAVRDETGATEHMLL 868

Query: 294  ---DVSK---EITVNDQLTHTYEILHNLTVAIAI-----FDQNRYLQFHNRSFVELWEID 342
               D++       +  +     E+  N+   +        D N  +++     VEL  + 
Sbjct: 869  TFMDITHVKHAEAMRQEARSLDEVSRNVP-GVVFKLCAPHDGNIRVEYVGGGTVELCGLS 927

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLH 401
               +  +P           A   P+ +       +      +    +   H   G   +H
Sbjct: 928  QEEIKADP-------HALVALFGPDVVPHILAGISATDGEGTPVDVEIPLHCTGGTKWVH 980

Query: 402  VIVTSNP--RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            V  TS P   GGT W  +  + T +    T+ +         +DH    +      G   
Sbjct: 981  VQATSTPARGGGTEWYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGACD 1040

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              N  +         +         +                        +   K   G 
Sbjct: 1041 WFNTTWLDFTGRTMEQEYGYGWAEGVHPDDYDRCVSIYQKAFALQQAFEMNYRLKRHDGQ 1100

Query: 518  LELLSDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
               L D        PLP+     +  +    ++TD+V A  ++ E ++   +A+  K+ F
Sbjct: 1101 FRWLVD-----CGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEF 1155

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            + +VS+ELR+PL   +G     +  +L SL+ +Q QYV     S   L+ L++DILDL+ 
Sbjct: 1156 LANVSHELRTPLNGALGML---QLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSR 1212

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIF 691
            ++AG + +      + +L++EV  + +       I ++  I+ G       D  RL Q  
Sbjct: 1213 IEAGKLVIEAIPCDIKELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTL 1272

Query: 692  SKILSNAMDFSSKGST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFVSNAH 747
              ++ NA+ F+ KG   V    A   GD I    +V++ G  IPED  +S+F  F     
Sbjct: 1273 FNLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDG 1332

Query: 748  RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               RR  G+GLGL IV   + L GG + + S+    T ++  IP
Sbjct: 1333 SYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPNMGTAMHFAIP 1376



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 55/188 (29%), Gaps = 28/188 (14%)

Query: 143  LVAETQNDCAIKIEG--RVSGSCAFLRILSLD-----------GIYSELAETTLKCKKLS 189
            + A       + +E     +G   ++ + +             G+  +  E      ++ 
Sbjct: 954  ISATDGEGTPVDVEIPLHCTGGTKWVHVQATSTPARGGGTEWYGVAVDATERRYDATRMH 1013

Query: 190  NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQKAIGESR-KL 243
            N    +  + D    L+W  D  G   W N ++   T        G  + + +       
Sbjct: 1014 NAADRYLRILDHAPMLIWRSDTTGACDWFNTTWLDFTGRTMEQEYGYGWAEGVHPDDYDR 1073

Query: 244  FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-----KIVRVLNSF-GEAGIAIDVSK 297
                 +K      A E N+         G  +        +  +  +F G  G   D++ 
Sbjct: 1074 CVSIYQKAFALQQAFEMNYRLKRH---DGQFRWLVDCGKPLPDLDGTFSGFIGYCYDITD 1130

Query: 298  EITVNDQL 305
             +   + +
Sbjct: 1131 AVNALESM 1138


>gi|73748089|ref|YP_307328.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659805|emb|CAI82412.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 581

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 150/376 (39%), Gaps = 26/376 (6%)

Query: 416 FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +T ++    K  +  +      ++ + +G+ +   +G I L N A   ++K E   +
Sbjct: 230 FRLMTERLRDSIKAVSSERDHLSAVLERMGDGIFLLDREGSINLLNHASERIFKLEAGGV 289

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  I         + +   +F    +S   E   ++ T        L     PL 
Sbjct: 290 IGHSFVEAI--------RDHEINAVFERAKSSGKQEMGFVELT---AGKRFLGIIATPLV 338

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +    L              L +    LR+ ++++  FV ++S+ELR+P+T++   T+ L
Sbjct: 339 SQSGYLV-------------LVQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETL 385

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +       +   + +++ I      L  LV ++ DL+ +++G   LN     +   +   
Sbjct: 386 QEGAASDPDV-AAGFIDKIHLEVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLA 444

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + ++ +     I + V     L     D  R+ Q+   ++ NA+ F+ KG  + +    
Sbjct: 445 AERLSPQAERAGIILGVELPETLPRVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGVRT 504

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +   +  V ++G  IPED    VF RF          G GLGL+I +  +  HGG +  
Sbjct: 505 QSQTLVVYVTDSGIGIPEDDLTRVFERFYKVDKSRSGGGTGLGLAISKHIVQAHGGSIWA 564

Query: 775 SSSDEGVTTINCRIPS 790
            S      T +  +P 
Sbjct: 565 ESVYGKGATFSFSLPL 580



 Score = 41.5 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 30/169 (17%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V+ +  H   +L  +   I + D+   +   N +   +++++   +  +      +E 
Sbjct: 242 KAVSSERDHLSAVLERMGDGIFLLDREGSINLLNHASERIFKLEAGGVIGH----SFVEA 297

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSN-PRGGTIWM 415
           +R                 +F   KSS   +  +       + L +I T    + G + +
Sbjct: 298 IRDHEI-----------NAVFERAKSSGKQEMGFVELTAGKRFLGIIATPLVSQSGYLVL 346

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPD 453
            ++L+    LE            +  T +       + L EG A   PD
Sbjct: 347 VQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEG-AASDPD 394


>gi|323440764|gb|EGA98473.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus O11]
          Length = 546

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 189 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 248

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 249 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 295

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 296 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 341

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 342 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 399

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 400 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 458

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 459 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 518

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 519 EAHQGNIEVNSQVGKGSTFKVIL 541



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 200 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 252

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 253 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 310

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 311 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 369

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 370 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 422


>gi|108763883|ref|YP_632940.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622]
 gi|4467966|emb|CAB37946.1| histidine kinase PhoR1 [Myxococcus xanthus]
 gi|108467763|gb|ABF92948.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622]
          Length = 454

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 152/398 (38%), Gaps = 33/398 (8%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G    +   +   G    +   L+ +           +     +D ++EGV V   +G +
Sbjct: 77  GVPERLDEVAGLEGAIDSLHAQLSAR---NAALTQEARTLTAVLDGMTEGVWVTDAEGTV 133

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N A R L  +  + L+    +  I        NE+    +  A   S       L+ 
Sbjct: 134 VRHNDALRPLLASTNSPLTGQRPLALI-------RNEALHDAVMRACRESASSH---LEL 183

Query: 517 TLELLSDSVLEYSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           TL+      L   + PL      +   F +VT+  R E+              ++  FV 
Sbjct: 184 TLDGHFPRTLSIRVTPLAKDLPGSAAVFHDVTELRRLEK--------------VRKDFVA 229

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+ELR+P+T I G+ + L+   L        + VE I   S  L  LV D+L+L+ ++
Sbjct: 230 NVSHELRTPITAIRGYAETLQGGALND-PVMAPKMVEIIHRQSERLSELVEDLLELSRLE 288

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +  + L  + + L D       ++  K       + +     L +   D + + Q+   +
Sbjct: 289 SREVSLKLARVTLADAAARAADTVRPKAGGKGQVVSLHVPQDLLAV-GDPRAVEQVLLNL 347

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
           L NA+ ++  G  V +    + G  +  VK+ G  I       +F RF            
Sbjct: 348 LDNAVKYTPAGGRVDVYGEYEQGRCVVRVKDTGVGIEAKHQSRIFERFYRVDKGRSRDMG 407

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           G GLGL+IV+  +    G V + S   G +T    +P 
Sbjct: 408 GTGLGLAIVKHLLQAMDGEVKVESEPNGGSTFTIFLPL 445



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 11/159 (6%)

Query: 154 KIEGRVSGSCAFL--RILSLDGIYSEL----AETTLKCKKLSNHISVFKVLFDSLDFLVW 207
           + EG  S +   +  R+  + G+   +    A+ + +   L+        + D +   VW
Sbjct: 66  RAEGGASTAAPGVPERLDEVAGLEGAIDSLHAQLSARNAALTQEARTLTAVLDGMTEGVW 125

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
             D  G ++  N + +    +              L + E     +  +  E        
Sbjct: 126 VTDAEGTVVRHNDALRPLLASTNSPLTG--QRPLALIRNEALHDAVMRACRESASSHLEL 183

Query: 268 TLEHGNNKSYKIVRVLNS---FGEAGIAIDVSKEITVND 303
           TL+    ++  I     +    G A +  DV++   +  
Sbjct: 184 TLDGHFPRTLSIRVTPLAKDLPGSAAVFHDVTELRRLEK 222



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 26/194 (13%)

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           +     L     ++R    ++              G          L    ++  A   +
Sbjct: 52  MQRQLDLLARHTRERAEGGASTAAPGVPERLDEVAG----------LEGAIDSLHAQLSA 101

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +   +  +      +L  +T  + + D    +  HN +   L     + L        + 
Sbjct: 102 RNAALTQEARTLTAVLDGMTEGVWVTDAEGTVVRHNDALRPLLASTNSPLTGQRPLALIR 161

Query: 357 -EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--GTI 413
            E L  A         +  +E+  S  + +       H P  +TL + VT   +   G+ 
Sbjct: 162 NEALHDAVM-------RACRESASSHLELTLDG----HFP--RTLSIRVTPLAKDLPGSA 208

Query: 414 WMFENLTVQVDLET 427
            +F ++T    LE 
Sbjct: 209 AVFHDVTELRRLEK 222


>gi|254853972|ref|ZP_05243320.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300765001|ref|ZP_07074989.1| histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|258607361|gb|EEW19969.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300514301|gb|EFK41360.1| histidine kinase [Listeria monocytogenes FSL N1-017]
          Length = 591

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 151/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EVLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDIDEVIEQSARTIFEMATEKN 462

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           IR+ +            DR +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IRVTIPEKTSASVMIETDRDKLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 1079

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 130/254 (51%), Gaps = 11/254 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D+      L    E    A+  K++F+ ++S+++R+P+  IIGFT L  ++       + 
Sbjct: 547 DTQELNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNI--DDTDRV 604

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+    ASS  LL+L+ND+LD++ +++G + L    + L+D+L+++K  ++ +++   
Sbjct: 605 KDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYAKQ 664

Query: 667 IRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----- 720
           + + + + D        D+ RL QI   +LSNA+ F+  G TV ++  +  G        
Sbjct: 665 LELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRGCGQY 724

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSS 777
            F +K+NG  + ++  + +F  F           +G GLG++I ++ +++ GG + + ++
Sbjct: 725 EFRIKDNGIGMSQEFAQKIFEPFERERTSTVSGIQGTGLGMAITKNIVDMMGGTIEVQTA 784

Query: 778 DEGVTTINCRIPSK 791
               T     +P +
Sbjct: 785 QGKGTEFTVCVPMR 798


>gi|160934161|ref|ZP_02081548.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753]
 gi|156866834|gb|EDO60206.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753]
          Length = 947

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 8/235 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E        K+ F+  +S+E+R+P+  I+G  DL  T  + SL  K    +  I  SS  
Sbjct: 562 EKAEAGSRAKSDFLSRMSHEIRTPMNAIVGLADL--TEMIPSLPEKAQINLTKIKTSSRY 619

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+NDILD++ +++G M+L  +   LN LL +++  +  +     +  +V  + +   
Sbjct: 620 LLSLINDILDMSRIESGKMELEQNPFSLNVLLCDIESMLTAEAERRELTFRVEKNLQHDV 679

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDM 734
           F+ D  RL Q+   +LSNA  F+  G TV L+          G+ +  V + G  I E+ 
Sbjct: 680 FIGDTVRLRQVILNLLSNAFKFTPSGGTVWLRVTEPSFTETTGNVLVQVIDTGIGISEEN 739

Query: 735 CKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            K +F  F        + +G GLGL+I  + I L GG + + S     +  +  I
Sbjct: 740 QKRIFRSFEQVGPNATKCQGTGLGLAISRNIIKLMGGEILVKSELGKGSEFSFSI 794


>gi|119484858|ref|ZP_01619340.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457676|gb|EAW38800.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 650

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 164/387 (42%), Gaps = 24/387 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++ +E        +    +D     +     + ++   N A   ++  +   +     I
Sbjct: 126 ERLRVEEALRQTDDLLKAIVDASPVAIITLNLEKKVITWNIAAERIYGWQSQEV-----I 180

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--- 537
             +        +E     LF   + ++       Q   +      +  S+ PL NA+   
Sbjct: 181 DQLLPLIPPEEDE-QFNRLFQQALQNYTRTNYEFQHRGKNNDLIEISISLAPLHNAEGNV 239

Query: 538 --TMLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              ++T V++T   R E       +           A+ IK+ F+  +S+ELR+PL +I+
Sbjct: 240 CGVVMTAVDITTRKRIEAERFNLLQREQSARAEAEAANRIKDEFLAVLSHELRTPLNSIL 299

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+  L++  KL     +Q+  +E I  +++I   L+ D+LD++ +  G + LN +++ L 
Sbjct: 300 GWITLIQRGKLNQTTLEQA--LEVIERNASIQTQLIEDLLDISRISRGQLNLNINSVNLV 357

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +L+     ++       +I I++I D ++     D  RL Q+F  + SNA+ F+ K  +V
Sbjct: 358 ELIQTTVDTVRPAAEAKSIAIELILDHRINIISGDGNRLQQVFWNLFSNAIKFTPKEGSV 417

Query: 709 ILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
            +K  + ++      V ++G  I  +    VF  F        R   G+GLGL+I    +
Sbjct: 418 TIKLNKVEDSYAQIKVIDSGIGIEPNFLPYVFEYFRQADASTTRSQGGLGLGLAISRHLV 477

Query: 766 NLHGGHVSISSSD-EGVTTINCRIPSK 791
            LHGG + + S      +     +P +
Sbjct: 478 ELHGGTIDVESEGKGKGSVFIVMLPIR 504


>gi|24251268|gb|AAN46188.1| unknown protein [Synechococcus elongatus PCC 7942]
          Length = 977

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 140/320 (43%), Gaps = 9/320 (2%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+       +   +      L   I TS  DE   L      ++ ++ E  ++ L 
Sbjct: 389 GWAAHLGMRIEQLAHAADAMASGQLQQQIPTSGRDELTVLAQAFNRMAVTLREL-LVSLE 447

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +     T      + R E+A     E    A++ K++F+ ++S+ELR+PL  IIG+++++
Sbjct: 448 HRVQERTAALRETNDRLEQA----REQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMM 503

Query: 595 KTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                  +   +       I+ +   LL L+N ILDL+ ++AG M+L   +  L +L+N 
Sbjct: 504 MEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELING 563

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           VK  I   + +N  ++ V     +G   AD  +L Q    +LSNA  F+ +G+       
Sbjct: 564 VKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQGTD-SAAGC 622

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                 +F V ++G  +  +    +F  F        R   G GLGLSI   FI + GG 
Sbjct: 623 CQGDQVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGK 682

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S     +T    +P +
Sbjct: 683 ITVESVLGEGSTFTITLPRQ 702


>gi|57867173|ref|YP_188828.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
 gi|57637831|gb|AAW54619.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
          Length = 565

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 166/377 (44%), Gaps = 40/377 (10%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         T++++   V +    G I ++N A+  ++   +  +  
Sbjct: 210 DLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYQVFN-PDQMVEN 268

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
            ++I  I  +  +             II SF  E+   + L+  +  +     + S IP+
Sbjct: 269 KSYIGFIDDSIEKL------------IIESFRTEKVIYEQLEVAINNVHTKYFDVSCIPI 316

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                      V         +      L+K + ++  FV +VS+EL++P+T+I GF + 
Sbjct: 317 LTKSKKNLQGMVV--------VLHDITNLQKLENLRREFVANVSHELKTPITSIKGFAET 368

Query: 594 LKTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           L     G+ N +QS   ++  I   S  + +LV D+LDL+ ++    +L  + + L++L 
Sbjct: 369 LIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIEQQK-ELEINYMNLSELA 424

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             +  ++ T+ +   I+I+   +  +    A   ++ Q+ + +LSNA+++SS+ + VI++
Sbjct: 425 INIIDNLQTQAYNKRIKIQSEIEKDVI-IEAHENKIAQVITNLLSNAINYSSEDNKVIVR 483

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
             R++      +++ G  I E   K +F RF            G GLGLSI +  +  H 
Sbjct: 484 VYRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHN 543

Query: 770 GHVSISSSDEGVTTINC 786
           G + + S+    +    
Sbjct: 544 GRIGVKSAPGKGSIFKV 560


>gi|49486518|ref|YP_043739.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|49244961|emb|CAG43422.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MSSA476]
          Length = 554

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|15924682|ref|NP_372216.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927270|ref|NP_374803.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|21283365|ref|NP_646453.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|148268172|ref|YP_001247115.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394239|ref|YP_001316914.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156980009|ref|YP_001442268.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253317164|ref|ZP_04840377.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253732343|ref|ZP_04866508.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734524|ref|ZP_04868689.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006476|ref|ZP_05145077.2| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794077|ref|ZP_05643056.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9781]
 gi|258415781|ref|ZP_05682052.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9763]
 gi|258421982|ref|ZP_05684902.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9719]
 gi|258438260|ref|ZP_05689544.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A9299]
 gi|258443718|ref|ZP_05692057.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A8115]
 gi|258445929|ref|ZP_05694105.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6300]
 gi|258448390|ref|ZP_05696507.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6224]
 gi|258454129|ref|ZP_05702100.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A5937]
 gi|269203310|ref|YP_003282579.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893187|ref|ZP_06301421.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A8117]
 gi|295406002|ref|ZP_06815810.1| two-component system [Staphylococcus aureus A8819]
 gi|296274881|ref|ZP_06857388.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207595|ref|ZP_06924030.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245072|ref|ZP_06928949.1| two-component system [Staphylococcus aureus A8796]
 gi|300911676|ref|ZP_07129120.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701488|dbj|BAB42782.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247464|dbj|BAB57854.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21204805|dbj|BAB95501.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|147741241|gb|ABQ49539.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946691|gb|ABR52627.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156722144|dbj|BAF78561.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253723865|gb|EES92594.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727465|gb|EES96194.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257788049|gb|EEV26389.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9781]
 gi|257839374|gb|EEV63847.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9763]
 gi|257842026|gb|EEV66455.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9719]
 gi|257848304|gb|EEV72295.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A9299]
 gi|257851124|gb|EEV75067.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A8115]
 gi|257855171|gb|EEV78110.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6300]
 gi|257858358|gb|EEV81243.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6224]
 gi|257863581|gb|EEV86338.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A5937]
 gi|262075600|gb|ACY11573.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764505|gb|EFC04631.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A8117]
 gi|285817375|gb|ADC37862.1| Phosphate regulon sensor protein PhoR [Staphylococcus aureus
           04-02981]
 gi|294968999|gb|EFG45020.1| two-component system [Staphylococcus aureus A8819]
 gi|296887612|gb|EFH26510.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178152|gb|EFH37400.1| two-component system [Staphylococcus aureus A8796]
 gi|300887097|gb|EFK82298.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|315130674|gb|EFT86660.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus CGS03]
          Length = 554

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1200

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/364 (22%), Positives = 158/364 (43%), Gaps = 34/364 (9%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           ++   E ++ ++ GV            N A     K +            +    +   N
Sbjct: 421 MRFLEENLETMASGV------------NSALD-YVKLQNFLEETQAQAEELQTQHNELEN 467

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            +   +  +  + + ++E +  Q  L+  +  + E S +                     
Sbjct: 468 LNAELEAQSQKLQASEEELRVQQEELQQTNGELEERSGL----------------LEEKN 511

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             + +K E L      K+ F+ ++S+ELR+PL +I+  + LL  +   +L S+Q +Y   
Sbjct: 512 LEILKKAEELELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENDDKNLTSEQIEYATV 571

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I +S   LL L+++ILDL+ ++AG M+L+Y  + + ++ +++K   A    E  +   V 
Sbjct: 572 IQSSGNGLLGLIDEILDLSKIEAGKMELDYVPVSVKEICDDMKGLFAPVAREKGLDFSVA 631

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-FIFSVKNNGSS 729
           I +G       D+ R+ QI   ++SNA+ F+S+GS  + +K    N     F V++ G  
Sbjct: 632 IGNGVPPVIETDKMRMEQILKNLVSNALKFTSQGSVGITVKLQEGNDRMLCFVVRDTGIG 691

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +  + +F  F       +R   G GLGLSI      L GG +S++S     +     
Sbjct: 692 VAPEKQQHIFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEISLTSVVNEGSEFTLF 751

Query: 788 IPSK 791
           +P K
Sbjct: 752 VPIK 755


>gi|34497036|ref|NP_901251.1| sensor/response hybrid [Chromobacterium violaceum ATCC 12472]
 gi|34330322|gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC
           12472]
          Length = 664

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 118/246 (47%), Gaps = 9/246 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A   LTE  +A   A+  K+ F+  +S+E+R+PL  +IG TDLL+ ++   L+ +Q  
Sbjct: 9   QQANVQLTEARDAAEAANRAKSEFLAVMSHEIRTPLNGVIGMTDLLQRTR---LDDRQRH 65

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV  +  S   LL +++DILD + ++AG  +L+     LN L+ E+ + +A   +   + 
Sbjct: 66  YVSVVHRSGEDLLAIISDILDFSKIEAGKFELDRQPFCLNLLVEEIVERLAPVAYGKGLE 125

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVK 724
           +           V D +RL Q+ + ++ NA+ F+  G     V      D G     SVK
Sbjct: 126 LMCALPLMPVEVVGDGKRLGQVLTNLVGNAIKFTESGHVLAKVDRAGESDAGVTCRISVK 185

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  D  K +F  F        RR  G GLGL I +  + + GG + + S     +
Sbjct: 186 DTGIGIAPDQQKRLFKPFSQADSSTTRRFGGTGLGLVISQRLVGMMGGRIELESEPGSGS 245

Query: 783 TINCRI 788
             +  +
Sbjct: 246 EFHFTL 251


>gi|237667737|ref|ZP_04527721.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656085|gb|EEP53641.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 562

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 169/408 (41%), Gaps = 34/408 (8%)

Query: 386 ETHKDTWHLPNGQT-LHVIVTSNPRGGTIW-MFENLTVQVDLE-TKYNTLVKVQGETIDH 442
           E    T  + NG   +   V SN   G +   F ++  ++ L+  +            + 
Sbjct: 183 ELESVTLKMANGDYKIRAKVNSNDELGILGDSFNHMADELQLKIQEVVNNQTKLESIFNS 242

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +  GV     +  +   NPA   L   +++ +  G  + +  +         D  +    
Sbjct: 243 MDSGVVAVDNENNVISINPAAELLLGIKKSIV--GEKLTDYVSDHEINGFLMDSEEEDKE 300

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I      ER       E++   +         N   +++F ++TD  R E          
Sbjct: 301 ITILHPIERNIKIKKSEMIDKKI---------NLGKVISFQDITDMKRVEL--------- 342

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
                +++ FV +VS+EL++PLT+I GF + L+   +   ++ + ++++ I   +  L  
Sbjct: 343 -----MRSQFVANVSHELKTPLTSIKGFAETLR---IVDDSATREKFLDIIDKEAERLTR 394

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDIL L+ +++  +  +        ++ E    +       N+ ++   D      + 
Sbjct: 395 LINDILVLSNIESN-LVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFE-DNSSECILG 452

Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           DR +  Q+   ++ NA+ +S  K   V + +  D G +   +++NG  IP++    +F R
Sbjct: 453 DRDKFYQLVLNLIENAVKYSKEKEGYVKISSHNDGGYYHLKIEDNGIGIPDEDISRIFER 512

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F       ++ G GLGL+IV+  + +  G +++ S     TT   +IP
Sbjct: 513 FYRVDKSRKKGGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 560


>gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
 gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
          Length = 1152

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 127/259 (49%), Gaps = 4/259 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + Q  +      D  R+   +  K + L +A   K+ F+ ++S+ELR+PL + +    LL
Sbjct: 450 SEQARILEQQKDDLNRSAADIALKAQELEQASRYKSDFLANMSHELRTPLNSSLILAKLL 509

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++ G+L  +Q ++   I +S   LL L+NDILDL+ ++AG M +N   +    L +++
Sbjct: 510 ADNRDGNLTEEQVKFARTIQSSGNDLLALINDILDLSKIEAGQMDINAEPVSFRRLASDL 569

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +       E  +  +V +   L     +DRQRL Q+   +LSNA+ F+ +GS V L+ +
Sbjct: 570 TRMFEPLAGEKGLTFRVEAHDTLPDLFDSDRQRLEQVLKNLLSNALKFTERGSVV-LRMS 628

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
             N    F+V + G  I  +  +S+F  F         +  G GLGLSI      L GGH
Sbjct: 629 AANNKVHFAVSDTGIGISAEQQQSIFEAFRQADSTISRKYGGTGLGLSISRELSRLLGGH 688

Query: 772 VSISSSDEGVTTINCRIPS 790
           + + S  +  +     +P 
Sbjct: 689 IELKSEPDEGSIFTLILPL 707


>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
          Length = 2062

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 20/251 (7%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             E    A   K+ F+ ++S+E+R+P+  IIG TDL   ++   L ++Q +Y+  + +S+ 
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTE---LTAEQREYLSMVQSSAG 1393

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL ++NDILD + ++AG ++L+ +   L   L +  ++++ + H+  I +       + 
Sbjct: 1394 SLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVP 1453

Query: 679  -SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI--FSVKNNGSSIPE 732
             S + D  RL QI + ++ NA+ F+S+G     V ++ +   G+ +  FSV + G  IP+
Sbjct: 1454 DSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFSVIDTGIGIPK 1513

Query: 733  DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--- 787
            D    +F  F         +  G GLGL+I    + L  G +S+ S     +T       
Sbjct: 1514 DKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTAQF 1573

Query: 788  ------IPSKE 792
                  +P  E
Sbjct: 1574 PTSPNQLPLTE 1584


>gi|283850337|ref|ZP_06367626.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574363|gb|EFC22334.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 943

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/675 (16%), Positives = 222/675 (32%), Gaps = 81/675 (12%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEE 247
           +N +   + L++    ++   D  G +L  N  + +        V  + +G+        
Sbjct: 10  ANALERLETLYEMAPVMLHSIDATGRLLTVNARWLETLGYAAPDVIGRYLGDFFTPASRT 69

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA----------IDVSK 297
             +  +               +   + +   +  +L+S GE   A           D++ 
Sbjct: 70  EFQAALPRFLQAGALTAMPFQMAAKDGRVLDV--LLSSVGEFDPAGRFIRSLAAIEDITA 127

Query: 298 EITVNDQLTHTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
                  L  + E+           + I      L   N +    +      L      +
Sbjct: 128 RRRAERVLAKSEELFRMAFEGANEGLCIVSLEGRLLLVNEALCRFFGCQADNLVGKTIQE 187

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH---KDTWHLPNGQTLHVIVTSNPRG 410
             L         P  +            ++    H   +  W   + + +     +    
Sbjct: 188 --LAHQDDKGITPHHIVRALSGGQEHFRFEKRYRHASGRAVWARVSARLVRDAADAPL-- 243

Query: 411 GTIWMFENLTVQVDLETK-------YNTLVKVQGETIDHLSEG----------------- 446
             I    ++T       +          L+++     D L E                  
Sbjct: 244 HFICHVLDVTETRHSTEQLSLHSKTLEALLRLGRMREDGLPELGAYAMSRAVVLTGSRSG 303

Query: 447 -VAVFGPDG---RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE--------- 493
             A++  D    R+  +     S +    +    G     + A   +  +          
Sbjct: 304 IFAMYDADKDTIRLLAAQRQALSAFGLSPDARCFGLREVELFARAWQSQHPVLANTTRVD 363

Query: 494 -------SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                    G      +I    DE KS      +  D   + + +   +        +V 
Sbjct: 364 EGSRDDGRPGAPRGRYLIVPVADEAKSRLLVAVVDKDEPYDDADVHRLSLLGEGVLAHVK 423

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R ER L         A   K+ F+ ++S+E+R+PL+ IIG T +   +   +   + 
Sbjct: 424 ERSR-ERDLERARRQAEAASRAKSDFLANMSHEIRTPLSGIIGLTQM---TLSQTPRPEV 479

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I  SS  LL +VNDILD + ++AG M+ +     L + L+   +       +  
Sbjct: 480 RENLEMILDSSRSLLGIVNDILDFSKIEAGKMEFSSVDFDLREALDRTMKPFQFSSRQKG 539

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF--S 722
           +++ V     +   +  D  R++Q+   ++ NA+ F+ +G   V  +  R     +   S
Sbjct: 540 LKLSVRIASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQGEVAVEFRLLRPGDPLLVECS 599

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IPED    +F  F        +R  G GLGL+I    + + GG + + S    
Sbjct: 600 VRDTGIGIPEDRLPDLFQVFTQLEASRTKRFGGTGLGLAISRRLVEMMGGTIGVESRSNH 659

Query: 781 VTTINCRI---PSKE 792
            +T +  +   P++E
Sbjct: 660 GSTFSFTVSLRPARE 674



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 78/240 (32%), Gaps = 17/240 (7%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +D++      + L     +     V +   D    L   N  ++E        +      
Sbjct: 1   MDLNGGEGPANALERLETLYEMAPVMLHSIDATGRLLTVNARWLETLGYAAPDVIGR--- 57

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NP 408
             L +F   A++   Q     + +       +           +G+ L V+++S    +P
Sbjct: 58  -YLGDFFTPASRTEFQAALPRFLQAG-----ALTAMPFQMAAKDGRVLDVLLSSVGEFDP 111

Query: 409 RGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            G  I      E++T +   E       ++     +  +EG+ +   +GR+ L N A   
Sbjct: 112 AGRFIRSLAAIEDITARRRAERVLAKSEELFRMAFEGANEGLCIVSLEGRLLLVNEALCR 171

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            +  + + L  G  I+ +A    +           +     F  E++    +   +   V
Sbjct: 172 FFGCQADNL-VGKTIQELAHQDDKGITPHHIVRALSGGQEHFRFEKRYRHASGRAVWARV 230



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 71/272 (26%), Gaps = 35/272 (12%)

Query: 68  QLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
            L +  +L      +    D       +  +  + +     D       ++       + 
Sbjct: 12  ALERLETLYEMAPVMLHSIDATGRLLTVNARWLETLGYAAPDVIGRYLGDFFTPASRTEF 71

Query: 128 SKATEKLRKEG--QSFDLVAETQNDCAIKIEGRVSGS-CAFLRILSLDGIYSELAETTLK 184
             A  +  + G   +       ++   + +     G      R +       ++      
Sbjct: 72  QAALPRFLQAGALTAMPFQMAAKDGRVLDVLLSSVGEFDPAGRFIRSLAAIEDITARRRA 131

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI---------------------SYK 223
            + L+    +F++ F+  +  +      G +L  N                      +++
Sbjct: 132 ERVLAKSEELFRMAFEGANEGLCIVSLEGRLLLVNEALCRFFGCQADNLVGKTIQELAHQ 191

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
            +         +A+   ++ F    +       A  +     VS                
Sbjct: 192 DDKGITPHHIVRALSGGQEHF----RFEKRYRHASGRAVWARVSA-----RLVRDAADAP 242

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNL 315
             F      +DV++     +QL+   + L  L
Sbjct: 243 LHF--ICHVLDVTETRHSTEQLSLHSKTLEAL 272


>gi|255527099|ref|ZP_05393987.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296187887|ref|ZP_06856280.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255509201|gb|EET85553.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296047508|gb|EFG86949.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 924

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/502 (19%), Positives = 206/502 (41%), Gaps = 33/502 (6%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           D+      I  ++   + I D    +   N +  EL+++    +  N   D L E  + +
Sbjct: 19  DEKNKYLSIFQSIPNPVIILDDQNVISNINDTATELFKV----MDFNVKVDNLNEKKKFS 74

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
               E   + +   +  S  K  +++ D         L  I  ++   GTI + +++T  
Sbjct: 75  WIEDELKYFCSGNYSEISFIKEYKSYNDNLSFK--VKLKKIRVNDNFIGTIVILDDITNS 132

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             +  +     K   E  + + + +     +G+I+   P+ + +       L       N
Sbjct: 133 KKVSEELEHSEKSLREITESMKDLICKIDINGKIQYIGPSVKQILGYNLKDLIGKYIFSN 192

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPN---- 535
           I        +  D     ++    F D+  + Q       D     ++++  PL +    
Sbjct: 193 I--------HPEDLDKTMSSFNRGFIDKSSTGQELRVRKQDGHYIWVKFTYNPLYDENGN 244

Query: 536 -AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +  ++   ++T     E  L +    +  A   K+ F+ +VS E+++PL +II  TD++
Sbjct: 245 VSGAIIVAKDITKIKELEEELKKFKLEVESAKLAKSEFLANVSNEIKNPLNSIIDMTDVM 304

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +   SLN +Q++Y+  I  SS  LL  V+++L  + +++G ++L      + D++ E 
Sbjct: 305 LFN--TSLNEEQNEYMSIIKKSSESLLKTVDNMLGFSKIESGKVRLEEFEFNIKDIIYET 362

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
             ++A + HE N+ + +     L    + D  +L QI   I+ NA+ F+ KG   V ++ 
Sbjct: 363 LDALAIRAHEKNLELMIYIHPDLDENLIGDYFKLKQIIINIVGNAIKFTEKGEVAVYVEK 422

Query: 713 ARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFIN 766
             D  D      SV + G  + E+    + N++ +        +  G GLGL + +  I 
Sbjct: 423 VTDKLDKISLKISVIDTGIGMTEENINKL-NKYFNGVGNCKLKKYAGNGLGLILSKQLIE 481

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L  G +   S  +  T+    +
Sbjct: 482 LMDGEIWFESKYKKGTSFYLTL 503


>gi|120612634|ref|YP_972312.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120591098|gb|ABM34538.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1159

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 129/258 (50%), Gaps = 3/258 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT          +RA+ AL++K   L +A + K+ F+ ++S+ELR+PL + +    LL
Sbjct: 440 EEQTQQLEYQKQQLLRAQDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKLL 499

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +K G+L  +Q +Y E I  +   LLNL+NDILDLA ++AG   +    + +   +  +
Sbjct: 500 ADNKGGNLTEEQVRYAETIHGAGNDLLNLINDILDLAKIEAGQATVEIEPVNVARAVQSI 559

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + +     E N+    + +  +   +  D QRL QI   +LSNA+ F+ +G   +  AA
Sbjct: 560 VEPLRPLAREKNLAFSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTERGEVALRVAA 619

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
           + +G   FSV++ G  IPE   K +F  F         +  G GLGLSI      L GG 
Sbjct: 620 QPDGRVAFSVRDTGIGIPEHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGS 679

Query: 772 VSISSSDEGVTTINCRIP 789
           VS+ S+    +     +P
Sbjct: 680 VSVQSTSGQGSVFTLVLP 697


>gi|32477063|ref|NP_870057.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32447611|emb|CAD79210.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 652

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 152/326 (46%), Gaps = 26/326 (7%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L P  H+R+++   +         D       S DDE + L      +        +  L
Sbjct: 322 LQPLLHLRDVSDAIT-------HGDTNQRANISTDDEFRELADAFNRM--------LRHL 366

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              QT L  VN     R ++   + N  L +A+ +K  F+ ++S+ELR+PL +IIGF+++
Sbjct: 367 TETQTQLQSVNRELDARVDQ-FAQLNLQLYEANRLKTDFLANMSHELRTPLNSIIGFSEV 425

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+   + SL+ KQ +Y   I  S  +LL ++NDILDLA V+AG M++  S   L+ L+  
Sbjct: 426 LQ--GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEAGKMEVRRSEFQLSRLVGA 483

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               I +   + NI + V     L     D  +L QI + +LSNA+ F+ +G  + ++  
Sbjct: 484 QCDMIQSLSEDKNISLSVEVPEDLPVAYQDPNKLGQILNNLLSNAIKFTPEGGMITVRVV 543

Query: 714 R-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-------RGQRRGVGLGLSIVESFI 765
              +  F  SV + G  + ++    +F +F  +           +  G GLGLSIV+   
Sbjct: 544 DLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGLTREFAGTGLGLSIVKELA 603

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L GG +   S     +T    +P +
Sbjct: 604 VLLGGEIDFQSELGRGSTFWVILPYR 629


>gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
 gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
          Length = 1072

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 160/384 (41%), Gaps = 28/384 (7%)

Query: 422 QVDLETK---YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN------ 472
           + ++E +        ++    ID     VA+      I L N   ++++           
Sbjct: 147 EKEIELRTADLKASEELSRTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGEN 206

Query: 473 --RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L   +    ++   S      +  D+       F+ E  + +G +  +    L  SI
Sbjct: 207 ILTLLNMSLPDALSHVLSAPLALQNQPDVEGGF---FEVETTTKEGHMVPID---LGVSI 260

Query: 531 IPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             L  A     F+    S +A E+ L +      +A E+K+ F+ ++S+E+R+P+  IIG
Sbjct: 261 FELNGACHAALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIG 320

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            + L   +    L  KQ  YV  I +S+T+LL ++NDILD + ++AG + +  +   L+D
Sbjct: 321 MSHLALKT---DLTPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDD 377

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           + + V      K  E  + +      +     + D  RL QI   +++N++ F+ KG   
Sbjct: 378 VFHNVSMVTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEIT 437

Query: 709 I----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
           +    ++   D  +  F + + G  + +   KS+F  F        R   G GLGLSI  
Sbjct: 438 VSVHHIRNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICR 497

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             + L GG + + S     +    
Sbjct: 498 RLVELMGGQIRVESEAGKGSHFIF 521


>gi|309789904|ref|ZP_07684481.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308228036|gb|EFO81687.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 749

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/533 (18%), Positives = 208/533 (39%), Gaps = 71/533 (13%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
            E+L  L   + + ++   +   N   ++L  +    +        LL  L    ++ + 
Sbjct: 218 REVLSALPDGMVVLNRQMVVSEINPEAIKLLHLPPGQMIGR----SLLSLLADQPQMSQV 273

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH--------VIVTSNPRGGTIWMFENLT 420
            N          +            + +G TL         +  +++ R G + +  +++
Sbjct: 274 RNV---------LVDGPSPQTHQIVIGDGDTLQALELRLRPLRASNDARVGMLLLLRDVS 324

Query: 421 VQVDLETKYNTLVKVQGETIDH-----------------LSEGVAVFGPDGRIKLSNPAF 463
            +   E     +   +   ++H                 ++E +  +GP  R+ +     
Sbjct: 325 ERAKAEQA-RAMHVAELSLLNHVARAANSANETERLIRVIAETIVEYGPWERVAVG--LL 381

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS------FDDERKSLQGT 517
             +    +     GTH+    +          G +L A ++         DD   +    
Sbjct: 382 PKIGGQLDIVADFGTHMGQ--SYEGSLVRNQVGTELLALMMAGKSSQFDLDDPPAAESAI 439

Query: 518 LELLSDSVLEYS-IIPLPN----------AQTMLTFVNVTDSVRAER---------ALTE 557
           ++L+    L++  +IPL +            ++    +      AE            T 
Sbjct: 440 VQLMRREELQHILVIPLLHQANSLGVLVLGNSLSRPYSPALLHLAETIGELITDASVRTR 499

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E +R AD +K++F+  VS+ELR+PLT+IIG+T++L+    G L  +  + + ++  +S
Sbjct: 500 LYEEVRTADRLKSAFLATVSHELRTPLTSIIGYTEMLQRGLYGPLGERMGEPLGHMRTAS 559

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+ DILD + ++AG +K++ + +     +  V      ++ + ++ + +     L
Sbjct: 560 GTLLRLITDILDFSRMEAGHLKVDLTPVEPLRTIRSVAGQFQPQILQRSLALDLDLPDHL 619

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               A+  RL Q+ + ++ NA+ F+ +G  + + A         SV++ G  I  +   +
Sbjct: 620 PYIYANSMRLEQVLTNLIGNAIKFTDQGG-ITVSAHHHADRLRISVRDTGIGIAHEHQDA 678

Query: 738 VFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F           G GLGL+I    + L GG + + S+    +T    +P
Sbjct: 679 IFLEFRRIEQIGRHAGGAGLGLAISRRLVELMGGTIGLHSTPGEGSTFFIDMP 731


>gi|149190709|ref|ZP_01868976.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
 gi|148835475|gb|EDL52445.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
          Length = 832

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 121/251 (48%), Gaps = 10/251 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N        + L ++++    A + K+ F+  +S+E+R+P+  +IG T+LL  +K   L+
Sbjct: 277 NDQKMKEYNQRLRDESDRAEAAAKAKSEFLSTMSHEIRTPMNGVIGMTNLLLDTK---LD 333

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +  E    S+  LL+++NDILD + ++AG + L      L +++ +V   +     
Sbjct: 334 EQQIRMTETTKNSAESLLSIINDILDFSKIEAGKIDLELIDFDLGEVVEDVGAMLYFAAE 393

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR-DNGD 718
           +  I++   +   +   +  D  R+ Q+ + ++SNA+ F+  G     V +   R  +  
Sbjct: 394 QKGIQLVCPATPVMDLCYRGDPGRIRQVLNNLVSNAIKFTEDGEVAVYVTVDEKRLTDSI 453

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F +++ G  I E+  + +F+RF        R   G GLGLSI +    + GG + ++S
Sbjct: 454 LRFEIRDTGIGISEEQQQKLFSRFSQADSSTTRKYGGTGLGLSISKRLTEIMGGEIGVTS 513

Query: 777 SDEGVTTINCR 787
                +T    
Sbjct: 514 ETGKGSTFWFT 524


>gi|229087950|ref|ZP_04220060.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
 gi|228695363|gb|EEL48238.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
          Length = 609

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 150/395 (37%), Gaps = 27/395 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 232 VKVHSHDEIGQLALAFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 291

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 292 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 344

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            D  +  FV +VS+E
Sbjct: 345 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IDRERREFVANVSHE 390

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 391 LRTPLTTMRSYLEALSDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 449

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 450 LMKEWVDFTDFFNNVIDRFEMS-KEQNVIFKRSFSKKSRFIDMDGDKITQVLYNIISNAL 508

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++  + +F RF         Q  G GLG
Sbjct: 509 KYSPEGGTVTYRLRDREDMLEISVSDQGMGIPKENVEKIFERFYRVDKARSRQMGGTGLG 568

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L+I +  I  HGG +   S +   TTI   +P  +
Sbjct: 569 LAIAKEMIVAHGGSIWAKSEEGKGTTIYFTLPMAK 603


>gi|158320426|ref|YP_001512933.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158140625|gb|ABW18937.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 587

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 162/393 (41%), Gaps = 23/393 (5%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V + S+   G + + F ++   ++    + +         +  +   +     +  I L
Sbjct: 210 RVKIQSDDEIGELAVNFNHMADHLESTILQLSDSNTKFKALLTSMVNPIIAIDTNRHIIL 269

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N +   L+K +          R++       Y       L   +I  F  E  + + ++
Sbjct: 270 FNQSAEKLFKIDAKDALG----RDVIQIIEENY-------LDRQLIKVFTTEEANFEISI 318

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +  +  +L  +  P+         + +        A+ E    +R+ +++++ FV +VS+
Sbjct: 319 KRPAKKILSINANPIHLEHDPTRIMGIV-------AIMEDVTEIRRLEKMRSDFVTNVSH 371

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++PLT+I GF + LK+  +   +     +++ I   +  L  L+NDIL L+ +++   
Sbjct: 372 ELKTPLTSINGFVETLKSGAVEDRDVAMR-FLDIIEIETDRLKRLINDILTLSEIESMET 430

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           K   + I  +D L EV   I        I +    D  L S   +R    QI   +L N+
Sbjct: 431 KFIVNEIFPSDTLMEVVDFIIPLADSKEIELFTDIDSALPSIYGNRDWFKQIVINLLDNS 490

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + ++  G  V L A   + + +  VK+ G  IP+     +F RF         +  G GL
Sbjct: 491 IKYTPIGGKVELTAYTKDNNIVLHVKDTGIGIPKKDLPRLFERFYRVDKARSRKVGGTGL 550

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+IV+  +    G +++ S +   T     IP
Sbjct: 551 GLAIVKYIVLSFNGKINVDSEEGNGTEFIVTIP 583



 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S  + ++D  T    +L ++   I   D NR++   N+S  +L++ID           ++
Sbjct: 235 STILQLSDSNTKFKALLTSMVNPIIAIDTNRHIILFNQSAEKLFKIDAKDALGR----DV 290

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           ++ +       + +   T +E  F +       K    + N   +H+        G + +
Sbjct: 291 IQIIEENYLDRQLIKVFTTEEANFEI-SIKRPAKKILSI-NANPIHLEHDPTRIMGIVAI 348

Query: 416 FENLTVQVDLET 427
            E++T    LE 
Sbjct: 349 MEDVTEIRRLEK 360


>gi|229099892|ref|ZP_04230815.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
 gi|229118955|ref|ZP_04248300.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228664480|gb|EEL19976.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228683507|gb|EEL37462.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
          Length = 613

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 148/393 (37%), Gaps = 27/393 (6%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +       +     ++   +++  F     S +    
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG--IQEEFTLDHLYEEPDSVLLDF-----STRNEPY 347

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            +  +  FV +VS+E
Sbjct: 348 ILRAS---FSVIQKETGKANGLIAVLYDVTEQER-----------IEGERREFVANVSHE 393

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 394 LRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTEHR 452

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   D  N V         E N+  K     K      D  ++ Q+   I+SNA+
Sbjct: 453 LMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNAL 511

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G TV  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 512 KYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 571

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I +  I  HGG +   S +   TTI   +P 
Sbjct: 572 LAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLPL 604


>gi|167464605|ref|ZP_02329694.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 473

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 128/260 (49%), Gaps = 4/260 (1%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + L N  T     +  +       L    + ++K D++KN F+  +S+ELR+PLT+I G+
Sbjct: 214 MALGNFDTKAEKHHEDEVGHLADTLNFMADEIQKNDKLKNEFISSISHELRTPLTSIKGW 273

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           ++ L + +      +    +  IS  +  L+ LV D+LD + + +G +K++   + LN L
Sbjct: 274 SETLVSGEFQD-PEETRLGINIISKETDRLIGLVEDLLDFSKLQSGNLKISMIKLKLNPL 332

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+            IR++V ++ +    + D  R+ QI    + NAM F+ +G  + +
Sbjct: 333 VKEIGAQFGASCARKQIRLEVQAEEEPIHIMGDGNRIKQILINSIDNAMKFTPQGGVITV 392

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
              ++  + + +V++ G  IP ++ K V  +F        R+G GLGLSI +    L GG
Sbjct: 393 SLKQEGKEALITVQDTGEGIPPEILKHVTEKFFKG---TSRQGNGLGLSICKELTELQGG 449

Query: 771 HVSISSSDEGVTTINCRIPS 790
            ++I S     TTI  R P 
Sbjct: 450 KMTIESVFGEGTTITIRFPL 469


>gi|78486263|ref|YP_392188.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
 gi|78364549|gb|ABB42514.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
          Length = 901

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 94/401 (23%), Positives = 171/401 (42%), Gaps = 47/401 (11%)

Query: 424 DLETKYNTLVKVQGETI-------DHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRL 474
            ++ ++N L+    E I         + + + V    P G I   N  F  +    +  L
Sbjct: 354 QMKHRFNRLLSEINELIYSINYQQKAIDQTLIVSRTDPYGTILYVNDNFCKISGYSKEEL 413

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS----I 530
               H        S   +       F  I T+    +K   G +  L  +   Y     I
Sbjct: 414 VGQPH--------SIVRHPDMPKSTFENIWTTIQS-KKIWSGEITNLRKNGETYYVMSYI 464

Query: 531 IPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSY 578
           +PL +      + +    ++T+ V  E++L +  +   +        ++ K+ F+  +S+
Sbjct: 465 MPLLDKDGNIKEFLSIREDITERVHLEKSLEKAKQDAEERRLVAEKSNQAKSEFLSSMSH 524

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL +IIGF  LL+   L  L+ KQ + ++ IS S   LL+L+ND+L+LA +++G +
Sbjct: 525 ELRTPLNSIIGFAQLLE---LSDLSEKQKKQLKNISTSGEHLLHLINDLLELAKIESGNI 581

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
            L+     L  ++ E  Q + T   +++I+I +          +AD  RL Q+    L+N
Sbjct: 582 SLSVERTELKPIVEECLQMVHTAAEKHHIKITISEKSNCNYFVIADHLRLKQVLVNFLTN 641

Query: 698 AMDFSSKGSTVILKAAR--------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHR 748
           A+ ++ +  ++ L A +         NG    S+++ G  I E   K +F  F       
Sbjct: 642 AIKYNRENGSITLFAEKKPAEESPHKNGCIRISIEDTGYGIAEKYQKKLFQPFNRLGHET 701

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               G G+GL+I +  I    G V   S++   +     IP
Sbjct: 702 STIEGTGIGLAITKDLIEKMDGQVGFESTEGVGSKFWFDIP 742


>gi|26988382|ref|NP_743807.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24983135|gb|AAN67271.1|AE016353_11 sensor histidine kinase/response regulator GacS [Pseudomonas putida
           KT2440]
          Length = 917

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 143/328 (43%), Gaps = 20/328 (6%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV------LE 527
           L     I +         N+     L   + T    E   L   +  +++++      L+
Sbjct: 189 LRMSRTINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELAHGINRMAETLQNAHEELQ 248

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +SI    +  T     N+         L    +   +A  IK+ F+ ++S+E+R+PL  I
Sbjct: 249 HSI----DQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGI 304

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GFT LL+ S++     +Q  Y+  I  S+  LL ++N+ILD + ++AG + L+     L
Sbjct: 305 LGFTHLLQKSEM---TPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNL 361

Query: 648 NDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            DL+ +    +A   H   +  + +I      S V D  RL QI + ++SNA+ F+ +G+
Sbjct: 362 RDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGT 421

Query: 707 TVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
            V+     D  +       SV++ G  +     +++F  F    +    Q  G GLGL I
Sbjct: 422 IVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVI 481

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  I   GG + + S+    +     +
Sbjct: 482 SKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|71899102|ref|ZP_00681266.1| PAS [Xylella fastidiosa Ann-1]
 gi|71731096|gb|EAO33163.1| PAS [Xylella fastidiosa Ann-1]
          Length = 510

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 181/468 (38%), Gaps = 44/468 (9%)

Query: 351 SNDELLEFLRSANKLPE------QLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVI 403
           +N      LR  + + E        +   + +    V  S +  H +   L    ++ V+
Sbjct: 29  TNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARALRRWYSVEVM 88

Query: 404 VTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               P G  +  +F ++T    +E +            D L   V VF   G ++  N A
Sbjct: 89  RVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTA 148

Query: 463 FRSLWKTE-----ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +   +  +         S   H  ++     +            A++ +     +   G 
Sbjct: 149 YGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA-----RRYDG- 202

Query: 518 LELLSDSVLEYSIIPL--PNAQTMLTFVNVTD-SVRAERAL---------TEKNEALRKA 565
                   +E S  P   P+   +    N  D + R E  L                   
Sbjct: 203 ----QWRWIEMSATPRYSPDGHFIGLTGNSPDVTERLEIELAREQLLKSERAARNEAENM 258

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNL 623
             +K+ F+  +S+ELR+PLT I+G+++LL       +  +   Y  +  I++S+ +   L
Sbjct: 259 ARLKDEFLSTLSHELRTPLTTILGWSELLLQR----IEEQHPCYKGLSVIASSAKVQKRL 314

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LDL+++  G M+L    + L + + EV       +     R+ + +       + D
Sbjct: 315 ISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGD 374

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QIF  +LSNA+ F+     + ++   D   F  SV ++G  I  +    +F+RF 
Sbjct: 375 ATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAEFLPHLFSRFR 434

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
                  R   G+GLGL+IV+S + +HGG+V  +S            +
Sbjct: 435 QADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 482



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G     N S+ ++   + +V +   G       E IK+    + + ++   E  +    
Sbjct: 23  DGIFRLTNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARAL--- 79

Query: 272 GNNKSY--KIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD 323
              + Y  +++RV    G     + +D+++   +  +L  +    + L   +     +FD
Sbjct: 80  --RRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFD 137

Query: 324 QNRYLQFHNRSFVELWEIDLA-------FLATNPSNDELLEF-LRSANKLPEQLNWKTWK 375
               ++F N ++ E + +DL+        +  +P +  + EF L +A K    L      
Sbjct: 138 AQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA 197

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                 ++  E      + P+G  + +   S           ++T ++++E     L+K 
Sbjct: 198 RRYDGQWRWIEMSATPRYSPDGHFIGLTGNSP----------DVTERLEIELAREQLLKS 247

Query: 436 QGET 439
           +   
Sbjct: 248 ERAA 251



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGI 231
           ++ E     ++L+     F +L D L   VW  D  G + + N +Y        +     
Sbjct: 104 DITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTVP 163

Query: 232 VFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
            +   +     L F+ ++   + + SAL             G  +  ++          +
Sbjct: 164 EWSMVLHPEDVLIFEFKLSAALKTQSALRALVRARRY---DGQWRWIEMSATPRYSPDGH 220

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G  G + DV++ + +        +
Sbjct: 221 FIGLTGNSPDVTERLEIELAREQLLK 246


>gi|302333357|gb|ADL23550.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 554

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|298482966|ref|ZP_07001148.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270938|gb|EFI12517.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 660

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/512 (20%), Positives = 224/512 (43%), Gaps = 43/512 (8%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--AFLATNP-SNDELLEFLRSANK 364
            + I ++L+V + ++D++  +   N S +    I      L  N  +     + ++   +
Sbjct: 14  LHNIFNDLSVGLELYDKDGLMIDVNYSRLRSMGIKDKKDILGYNLFNYTSFSDEIKEQVR 73

Query: 365 LPEQLNW----------KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
             E + +            +  N+  +     T     +  +  T +++++ +     +W
Sbjct: 74  KGETVRFMAKYNFDDVRHLFPTNLSGIKFFEITVSFVHNEKSEITNYMVISQDVTERVLW 133

Query: 415 M--FENLTVQ--------VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
              ++NL  +        ++ E +   L++     +++++ G+A    D  ++  N +  
Sbjct: 134 QNKYDNLYEEAVRSKKELLESEQRMIQLIRQNELVLNNINSGLAYIANDYIVQWENISLC 193

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           S   + E           +    +          +      S   E         L +  
Sbjct: 194 SKSLSYEAYKKG-----ELCYLTAHNRTTPCENCVIQRARRSGQVE----SILFNLDNKH 244

Query: 525 VLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           V+E    P+ N Q      ++   +VT+       L        ++D++K++F+ ++S+E
Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHE 304

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL    +     ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 305 IRTPLNAIVGFSDLLM---VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 362 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 421

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG T+ +   + +GD    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 422 KYTSKG-TIEMGYEKIDGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I ++ +    G +   S  +  +     +P +
Sbjct: 479 ICKAIVEACRGEIGFESEFDKGSLFWAVLPCQ 510


>gi|53713997|ref|YP_099989.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216862|dbj|BAD49455.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1053

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 216/511 (42%), Gaps = 40/511 (7%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-ELLEFLRS 361
           + + +   ++ N+     +      L  + +   +    DL +L  NP  +         
Sbjct: 416 EAMANYKNLIDNMP----LLYMQEKLIVNEQGVAD----DLIYLNVNPHFEKHFFRREDV 467

Query: 362 ANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHLPNG-QTLHVIVTSNPRGGTIWMFE 417
             K   +L  ++  E +  +    K +      ++     +   +++    +   I +F 
Sbjct: 468 VGKRASELFPESLPEFLHFIQISLKENRAITFPYYFKKIDRFYDIVLKGAHQENVIDIFC 527

Query: 418 -NLTVQVDLETKYNTLVKVQGETIDHLSEGV----------AVFGPDGRIKLSNPAFRSL 466
            + T     + K N         ++ +++ +           +   +  I+LS    +  
Sbjct: 528 VDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIELS---AQGN 583

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             +EE    P +   +      R   E    DL    +    +E + +           +
Sbjct: 584 NVSEEQLAVPDSQYFSKIYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINIRNHTHKIEWV 643

Query: 527 EYSIIPLPNAQT------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           E         +       + +   +T   + E  LT   +   +++ +K++F+ ++S+E+
Sbjct: 644 EAQAAVETRDENGIPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEI 703

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+ +L +++       + +YV  I  ++ +LL L++DILDL+ ++AG ++ 
Sbjct: 704 RTPLNAIVGFSGILASTEEEEE---KQEYVSIIENNNALLLQLISDILDLSKIEAGTLEF 760

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            YS I LN  L +++ ++  K+  ++++++ +    +     ++ RL Q+   +++NA+ 
Sbjct: 761 QYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIK 820

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           F+S+GS +         +  F V + G  IP+D  +S+F RFV      Q  G GLGLSI
Sbjct: 821 FTSRGS-IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSI 877

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +   GGH+ + S +   +T    +P K
Sbjct: 878 CRTLVEHMGGHIGVDSEEGKGSTFWFSLPYK 908


>gi|84623857|ref|YP_451229.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84367797|dbj|BAE68955.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1131

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 129/810 (15%), Positives = 266/810 (32%), Gaps = 116/810 (14%)

Query: 75  LLTENNCLT-IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH--YIKLSKAT 131
           L+  +     ++ D   + P + G           D  LL    W               
Sbjct: 185 LVAADGSTLHVISDHVQDMPSLQGDFPLEAAQGLRDA-LLENRPWFTTDTMTPGAPDYVA 243

Query: 132 EKLRKEGQSFDLVAET-QNDCAIKIEGRVSGS-CAFL----RILSLDGIYS-ELAETTLK 184
           E+ R  G    L     ++   +   G    +   +L     ++ L      E  +    
Sbjct: 244 EQYRHSGLRASLAIPLHKHGRLVAAIGVHQRAPRHWLSTEIELVRLVAARCWESMQRAKA 303

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
            ++L+ + +  + L ++L  +++  D  G   + N  + + T  +    + A        
Sbjct: 304 QQQLAGNEARLRRLANTLPQIIFIADPDGRPHYFNQRWYEYTGLDPSNNEDAAWHRAHTA 363

Query: 245 KE---EIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDV 295
                  +   ++ +       E       G ++ +  + + V    G      G   D+
Sbjct: 364 DGLRLSAQAWTLALNGKRAFEMECELLRHDGQSRWHLARALPVRGDDGSISEWIGTYTDI 423

Query: 296 SKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAF 345
                   QL         +   +   I + D      + N  + +         +D  +
Sbjct: 424 HDRRAFEQQLRESEVRFRALCETVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQALDQGW 483

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--------PNG 397
                 +D      R  +   + LN +      + V +    ++  W +         +G
Sbjct: 484 WDVMHPDDA----ARVRHAFEQALNQRGEFIAEYRVRRHDGQYR--WCIDTASPHFASDG 537

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-----EGVA--VF 450
           + L          G I    +++ +  +E    +   + G            + +A  V 
Sbjct: 538 RFL----------GHIGSLTDISERKHIEDATASDRAILGLITTGAPLPVVLDAIALSVE 587

Query: 451 GPDGRIKLSNPAFRSLWKT---------------------------EENRLSPGTHIRNI 483
                +   +   R   +                                LS    ++ I
Sbjct: 588 ARSEILLYCSVMVRDEVRHTLSFGSAAHFPIEYRGHFAPSPIGEDGPPCALSAHLGLQVI 647

Query: 484 AATCSRYYNESDGWDLFAAI------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            A      + ++   + AA+      IT   D    + GTL +  D       +P    Q
Sbjct: 648 CADIRADASFANHHAISAAMGIAACCITPILDSNGQVLGTLNIYYDRP----HLPSLREQ 703

Query: 538 TMLTFVNVTDSVRAER------------ALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            M    +    +  ER            A T        A  +K+ F+  +S+ELR+PL 
Sbjct: 704 AMARSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHASRVKDEFLATLSHELRTPLN 763

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G++ L+++      +    + +  I  S+     +++D+LD++ + +G ++L     
Sbjct: 764 AILGWSRLMQSEMTEPTH--LGRGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQAEHF 821

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSK 704
            +  L+    + +        I +++ +       F  D  RL Q+ + +LSNA+ F+  
Sbjct: 822 DIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFTPV 881

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           G TV +    ++      V++ G  I  D    VF+RF        RR  G+GLGLSI  
Sbjct: 882 GGTVRVAMDIEDERLRLCVQDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISR 941

Query: 763 SFINLHGGHVSISSS-DEGVTTINCRIPSK 791
             ++LHGG +  SS+ +         +P +
Sbjct: 942 QLVDLHGGSLGASSAGEGQGALFTIVLPFQ 971



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 99/309 (32%), Gaps = 41/309 (13%)

Query: 35  LTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE 94
           L+T I ++ L+  R   + +  +    L+    +L +   L      +  + D  D  P 
Sbjct: 280 LSTEIELVRLVAARCWESMQRAKAQQQLAGNEARLRR---LANTLPQIIFIAD-PDGRPH 335

Query: 95  IIGQ-LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND--- 150
              Q  ++   +  ++ +  ++            +   + LR   Q++ L    +     
Sbjct: 336 YFNQRWYEYTGLDPSNNEDAAWHR----------AHTADGLRLSAQAWTLALNGKRAFEM 385

Query: 151 --CAIKIEGRVSGSCAF---LR-----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
               ++ +G+     A    +R     I    G Y+++ +     ++L      F+ L +
Sbjct: 386 ECELLRHDGQSRWHLARALPVRGDDGSISEWIGTYTDIHDRRAFEQQLRESEVRFRALCE 445

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           ++  ++W  D  GD ++ N  +   T                   +  + R     AL +
Sbjct: 446 TVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQALDQGWWDVMHPDDAARVRHAFEQALNQ 505

Query: 261 NF---CETVSTLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQLTHTY 309
                 E       G  +    +   +          G  G   D+S+   + D      
Sbjct: 506 RGEFIAEYRVRRHDGQYRW--CIDTASPHFASDGRFLGHIGSLTDISERKHIEDATASDR 563

Query: 310 EILHNLTVA 318
            IL  +T  
Sbjct: 564 AILGLITTG 572


>gi|291571293|dbj|BAI93565.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
          Length = 1390

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 5/241 (2%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L +  EA   A+  K+ F+ ++S+ELR+PL  I+GFT LL  +    L S+Q +Y++ I
Sbjct: 909  QLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQNY--GLTSQQQEYLQII 966

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S   LL+L+N++LDL+ ++AG + LN +   L  LL  +   +  K    N+ + +  
Sbjct: 967  QQSGKYLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQL 1026

Query: 674  DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIP 731
               +  +V  D  +L Q+   +L NA+ F+  GS T+ +          F V++ G  I 
Sbjct: 1027 QQDIPDYVQTDESKLRQVLVNLLDNAIKFTDAGSVTLRVSFVSSVSQLYFEVEDTGPGIT 1086

Query: 732  EDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             D  + +F  FV     R  ++G GLGL+I + +++L GG ++I S  +G       IP 
Sbjct: 1087 PDEQERLFKPFVQTDVGRRHQQGTGLGLAISQQYVSLMGGKITIVSVVDGGAKFMFNIPV 1146

Query: 791  K 791
            +
Sbjct: 1147 E 1147



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 119/384 (30%), Gaps = 50/384 (13%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           +   +     F + I        E I +++ + S  E    E     ++G+ +  +   V
Sbjct: 234 EDLQKLGDRFFWEQIHPDDLPILETILEQVSALSEGEVLDIEYRMRHKNGSYRWLRAQEV 293

Query: 283 LNSFGEAGIAI-------DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
             +    G+A+       D++    +  QL  +      I ++++ +I + D    +   
Sbjct: 294 PFTKDANGLAVQVLGTAQDITSHKLIESQLQESEARLQVIFNSISDSILMVDCQGIVHAV 353

Query: 332 NRSFVELWEIDLAFLATNPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           N + + L+      L  N        + +  +     PE             + + +   
Sbjct: 354 NPAGLNLFGRTSEEL-INHELGLPITVGDVAQLGILNPE---------RGLVMVEMTVAE 403

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +    P     +V+            F ++T +   +       +   + ++H+ +   
Sbjct: 404 TEWLQRP----FYVVC-----------FRDITERCKTQEALQESEERFSQVVNHIQDVFW 448

Query: 449 VFGPDG-RIKLSNPAFRSLWK-------TEENRLSPGTHIRNIAATCSRY-YNESDGWDL 499
           +  P G ++   +PA+  +W         +        H  ++ +    + Y E      
Sbjct: 449 LTSPRGDKLFYISPAYEKIWGRSCQAVYDDPGSWLEAVHPDDLQSVIVNFSYQEYAQSRF 508

Query: 500 FAAIITSFDDERKSL-QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               I   D +   +      + ++      +  +    T           +AER     
Sbjct: 509 IEYRIFKPDGDMLWICDRAFPIKNERGDVVRVARIAEDITNRKKTEEHLRQQAEREHLLY 568

Query: 559 NEALRKADEI-KNSFVQHVSYELR 581
              L  +  +  +  +Q+   ELR
Sbjct: 569 QLTLHISQSLNLDDILQNTVNELR 592


>gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 822

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 12/251 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                 E  L +  E   KA ++K++F+ ++S+E+R+P+  ++G   LL T+K   LN +
Sbjct: 414 QQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTK---LNDE 470

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +YVE +S S+  LL ++NDILD + ++AG + L      +  +L+E+   +     + 
Sbjct: 471 QKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQK 530

Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDF 719
            I  ++    ++      D  RL QI   +  N + F+S+G  V LK  + N        
Sbjct: 531 EINFRLEGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVV-LKVTQKNISKSSVSI 589

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F+V ++G  IP +  K VF  F  N     R   G GLGLSI +  + L GG + + S 
Sbjct: 590 EFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGVLKLESK 649

Query: 778 DEGVTTINCRI 788
           D   +     I
Sbjct: 650 DGEGSKFTFTI 660


>gi|313157297|gb|EFR56722.1| PAS domain S-box protein [Alistipes sp. HGB5]
          Length = 743

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 112/660 (16%), Positives = 237/660 (35%), Gaps = 56/660 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR----DQAGDIL-----W 217
           R+       +++         +         L D L    +      D  G         
Sbjct: 106 RVPVAGRKEADVLTLESNYYAVLKENKHMDELLDHLPIGYFRIRLLYDDDGQATDYLFLS 165

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
            N + ++    +   +         +  +     + +    +    +  ++      +S+
Sbjct: 166 VNQTAQQILGVDAADYLDKTAREIDIPVDRHIDELAAIRLGDYKMDQWHASKTGRYCRSF 225

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNR 333
                 ++     + +D++  +T +  L    ++L     N  + I I+D+  +L   N 
Sbjct: 226 LYNTPNDATEIVILILDITDVVTAHQALDEKEKLLRNVIQNAPIGIEIYDRTGHLVDINA 285

Query: 334 SFVELWEI-DLAFLA-----TNPSND-ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
             +E++ + D A +       NP+   E+ + +R          +   K    S Y +S 
Sbjct: 286 RDLEMFGVTDPAGIRGLSIFDNPNFSAEIKDCIREGRGTDFTTRYDFSKAR--SYYDTSR 343

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           +    W      T  +    N  G     + +  + T     + +      +     ++ 
Sbjct: 344 SGYIDW------TARIRCLYNDTGEITHYLLINIDNTELRQTQDRLTEFEALFRLISEYA 397

Query: 444 SEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
             G   +       L N   +           +    I ++     R+ +  D   L   
Sbjct: 398 QVGYINYN------LCNKEGYAQSVWLRNYGEADTAAIGDVIGKY-RHIHPDDRTVLLNR 450

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP-------LPNAQTMLT---FVNVTDSVRAE 552
           +      E +S   +  +L D      I          P  Q +       ++T   + E
Sbjct: 451 LAQFESGEIQSASVSCRVLHDDGRTTWIKSHLICREYRPQEQVIDMLGINYDITALKQTE 510

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    E   +++++K +F+ ++S+E+R+PL  I+GF+ LL T +       + +Y + 
Sbjct: 511 QELIAAKERAEESNKLKTAFLANMSHEIRTPLNAIVGFSQLLTTEE---DPEVRKEYNDI 567

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S ++ +LL +++D+LDL+ +++G   L  +   L  L  E  ++   +  E  + + V 
Sbjct: 568 VSLNNGLLLQIISDVLDLSRIESGHADLVRTRFDLRTLCREAVETFRLQTPE-EVVLDVE 626

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                 +    RQ L+QI +  + NA+ F+ KG  V +   R        V++ G  IP 
Sbjct: 627 KGLPSCTVCQYRQGLMQILANFIRNALKFTPKG-FVTVGFERKRDRLSLYVRDTGIGIPA 685

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +    +F RF       Q  G GLGLSI +S     G  + + S+    +     +P  E
Sbjct: 686 EELDKIFERFYKVDTFTQ--GTGLGLSICKSIAEQMGAQIGVDSAVGEGSCFRVEMPIAE 743


>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1564

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 149/374 (39%), Gaps = 33/374 (8%)

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            +++      V   D  +   N     L +   +    G  I+++ A  + Y  +++G   
Sbjct: 906  LENNPHARKVLRHDRAVASDNALGDPLIQPVSDICEQGQ-IQSMLAIRTSYQRKANG--- 961

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
               ++   D +R   Q  +EL+     +  I                   +   AL +  
Sbjct: 962  -VIVLQQCDRKRDWTQAEIELIEAVAGQVGIALAHGHLLEQEQQQRQTLTQNNTALKQAR 1020

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +    A+  K+ F+  +S+E+R+P+  +IG T LL  +   +L+++Q  +VE I +S   
Sbjct: 1021 KDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNT---TLDNQQRDFVETIRSSGDA 1077

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILD + ++AG ++       L   + E  + +A +  +  + +  + D     
Sbjct: 1078 LLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPN 1137

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------------------ 720
              V D  RL QI   +L+N + F+ +G  VI      + D                    
Sbjct: 1138 HIVGDVTRLRQILVNLLTNGVKFTEQGEVVIYVQDITDTDITQPETTSQRKNFTDIQNQR 1197

Query: 721  ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSI 774
                F V+++G  IP D    +F  F            G GLGL+I  S   + GG + +
Sbjct: 1198 RLIQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRSLSQMMGGRIWV 1257

Query: 775  SSSDEGVTTINCRI 788
             S     ++    I
Sbjct: 1258 ESKAGVGSSFFFTI 1271


>gi|147677932|ref|YP_001212147.1| hypothetical protein PTH_1597 [Pelotomaculum thermopropionicum SI]
 gi|146274029|dbj|BAF59778.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 621

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 126/263 (47%), Gaps = 17/263 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK------- 595
           + +T+  + E AL + NE L + DE+K  F+  VS+ELR+PLT+++GF  + +       
Sbjct: 115 MEITERKKVEEALRQSNEKLTELDELKTDFLSTVSHELRTPLTSVLGFAKITQKRLEEHI 174

Query: 596 -------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
                    ++     +    +E I +    L  L+ND+LD+A ++AG ++     + + 
Sbjct: 175 FPLIISTDRRIEKTVKQVKDNLEIIVSEGERLTELINDVLDIAKLEAGKIEWKMEKLSMA 234

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D++     + +    +  +      +  L     DR RL+Q+   ++SNA+ F+++GS V
Sbjct: 235 DVIERATAASSYLFEQKGLAFFKEIEEGLPDLTGDRDRLIQVIINLISNAVKFTNEGS-V 293

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
             +A     +   SV + G  I  +  + +F +F         + +G GLGL+I +  + 
Sbjct: 294 TCRARMIGDEITVSVIDTGIGIAREDHERIFEKFKQAGETLTDKPKGTGLGLAICKQIVE 353

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG + + S     ++ +  +P
Sbjct: 354 HHGGRIWVESEPGKGSSFSFALP 376


>gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
 gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
          Length = 1072

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 160/384 (41%), Gaps = 28/384 (7%)

Query: 422 QVDLETK---YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN------ 472
           + ++E +        ++    ID     VA+      I L N   ++++           
Sbjct: 147 EKEIELRTADLKASEELSRTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGEN 206

Query: 473 --RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L   +    ++   S      +  D+       F+ E  + +G +  +    L  SI
Sbjct: 207 ILTLLNMSLPDALSHVLSAPLALQNQPDVEGGF---FEVETTTKEGHMVPID---LGVSI 260

Query: 531 IPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             L  A     F+    S +A E+ L +      +A E+K+ F+ ++S+E+R+P+  IIG
Sbjct: 261 FELNGACHAALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIG 320

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            + L   +    L  KQ  YV  I +S+T+LL ++NDILD + ++AG + +  +   L+D
Sbjct: 321 MSHLALKT---DLTPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDD 377

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           + + V      K  E  + +      +     + D  RL QI   +++N++ F+ KG   
Sbjct: 378 VFHNVSMVTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEIT 437

Query: 709 I----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
           +    ++   D  +  F + + G  + +   KS+F  F        R   G GLGLSI  
Sbjct: 438 VSVHHIRNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICR 497

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             + L GG + + S     +    
Sbjct: 498 RLVELMGGQIRVESEAGKGSHFIF 521


>gi|152977664|ref|YP_001377181.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152026416|gb|ABS24186.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 619

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 150/396 (37%), Gaps = 28/396 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 241 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 300

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +        +    I  I       +     ++   +++  F     S +    
Sbjct: 301 NDPAEKMLNVSRET-ALDQSILEILGI-QEEFTLDHLYEEPDSVLLDF-----STRNEPY 353

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L  S   +S+I     +       + D    ER            D  +  FV +VS+E
Sbjct: 354 ILRAS---FSVIQKDTGKANGLIAVLYDVTEQER-----------IDRERREFVANVSHE 399

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+   +
Sbjct: 400 LRTPLTTMRSYLEALSDGAWKDPNI-APQFLTVTQEETERMIRLVNALLQLSKMDSTEYR 458

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    +   +  N V         E N+        K      D  ++ Q+   ++SNA+
Sbjct: 459 LMKEWVDFTEFFNNVIDRFEMS-KEQNVIFNRSFSKKARFVDMDTDKITQVLYNVISNAL 517

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +S +G T+  +          SV + G  IP++    +F RF         Q  G GLG
Sbjct: 518 KYSPEGGTITYRLRDRGDMLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLG 577

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792
           L+I +  I  HGG +   S +   TTI   +P +KE
Sbjct: 578 LAIAKEMIIAHGGSIWAKSEEGKGTTIYFTLPLAKE 613


>gi|67921588|ref|ZP_00515106.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67856700|gb|EAM51941.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1249

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/481 (20%), Positives = 199/481 (41%), Gaps = 45/481 (9%)

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL--PEQLNWKTWKENIFSVYKSSET 387
            + N+     +  D+A    +P + E+ E  +  + +  P  +  K W   +  VY + + 
Sbjct: 794  YRNQE--IFFVRDVATADLSPCHREIYEQFQMRSLITAPVFVGEKLW--GLLGVYDNEQP 849

Query: 388  HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
                W       +  +      G  ++    L             +      +D+L +G+
Sbjct: 850  R--YWQRREIDLVKQVANQL--GVAVYQSNLLRHTRKQSQTLERTLADLNAIVDNLGDGL 905

Query: 448  AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
             V    GRI   NP   S++    + L  G  + +I  +           +LF  +    
Sbjct: 906  LVVDSFGRITRHNPKLLSMFNVTSSLL--GKRVVDIFPS-----------ELFPLLKKPG 952

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             ++ + +   + L ++ + +     +   +       +   +     L       R  D+
Sbjct: 953  LEQEEVVTVEMPLANNRLGQALASRIIKQEEETGIKYLGVVI-----LIRDITKERAVDQ 1007

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKT--------------SKLGSLNSKQSQYVEYI 613
            +K +F+  VS+ELR+PLT+I+GF+ L++               SK  +   +  Q ++ +
Sbjct: 1008 MKKNFLSMVSHELRTPLTSIVGFSSLIRDKLNETIFPEIQNPDSKTSNAIERIQQNLDIV 1067

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                  L  LV+D LD+  +++G + LN   I  + +L+    S++     +++ +    
Sbjct: 1068 VCEGERLSKLVHDFLDMTKIESGKITLNLFPIQPSTVLDWAIGSVSPLFSNSSVELVEDF 1127

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
               L + + D  RL+Q+F  ++SNA+ F+ KGS V  +A  D+ + + S+ + G  I E+
Sbjct: 1128 SRDLPTILGDEDRLIQVFVNVISNALKFTEKGS-VTCRAEVDHENLLISITDTGIGIAEN 1186

Query: 734  MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                VF+ F    +    +  G GLGLSI +  +  HGG++ ++S     TT     P  
Sbjct: 1187 DYSKVFDPFQQVGNVLTNKPPGTGLGLSISKQIVEQHGGNIWLTSKLGQGTTFFISFPLT 1246

Query: 792  E 792
            +
Sbjct: 1247 Q 1247



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 75/243 (30%), Gaps = 24/243 (9%)

Query: 200  DSLDFLVW----HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
            +  +  +W     +   G   + N       +           E  + F  +++  + + 
Sbjct: 774  EGAEKPMWEDSYLQHTQGG-CYRNQEIFFVRDVATADLSPCHREIYEQF--QMRSLITAP 830

Query: 256  SALEKNFCETVSTLEH-----GNNKSYKIV-RVLNSFGEAGIAIDV-----SKEITVNDQ 304
              + +     +   ++        +   +V +V N  G A    ++      +  T+   
Sbjct: 831  VFVGEKLWGLLGVYDNEQPRYWQRREIDLVKQVANQLGVAVYQSNLLRHTRKQSQTLERT 890

Query: 305  LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
            L     I+ NL   + + D    +  HN   + ++ +  + L     +      +  +  
Sbjct: 891  LADLNAIVDNLGDGLLVVDSFGRITRHNPKLLSMFNVTSSLLGKRVVD------IFPSEL 944

Query: 365  LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
             P        +E + +V      ++    L +        T     G + +  ++T +  
Sbjct: 945  FPLLKKPGLEQEEVVTVEMPLANNRLGQALASRIIKQEEETGIKYLGVVILIRDITKERA 1004

Query: 425  LET 427
            ++ 
Sbjct: 1005 VDQ 1007


>gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1202

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/358 (24%), Positives = 157/358 (43%), Gaps = 22/358 (6%)

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSP----GTHIRNIAATCSRYYNESDGWDLFAAII 504
            +  PD R ++ +   +   K    RL+     G+  + +       ++ S         I
Sbjct: 698  LIHPDDRDRVWSEIQQETEKGTPFRLTYRINAGSETKWVWEHGQGIFDASGKLLALEGFI 757

Query: 505  TSF------DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
                     +D RK  Q  LE+    V E +   L   + +     + +    E+ L + 
Sbjct: 758  HDITERKLAEDVRKRTQEELEM---RVSERTAWLLRINRALNE--EMLEHKETEKKLLQA 812

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             +A   A      F+ ++S+E+R+P+ ++IG   LL  +   +L+ +Q  YV+ I +S  
Sbjct: 813  QQAADAASRSMGEFLAYMSHEIRTPMNSVIGLAGLLLET---NLSPEQRDYVQTIHSSGD 869

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL+++NDILD + ++ G MKL      L   ++     +A K  E  + +    D  + 
Sbjct: 870  ALLSIINDILDFSKINEGKMKLELEPFSLRKCIDRSINMVAAKAAEKGLEMGFYLDDLVP 929

Query: 679  -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             + V D  RL QI   +L NA+ F+ +G   + +K   + G   FSV + G  I +   K
Sbjct: 930  QTVVGDSVRLQQILVNLLGNAVKFTERGMVSLEVKMGDEPGMLHFSVTDTGIGISKSDMK 989

Query: 737  SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +F+ F  V  +   +  G GLGL+I    +   GG + + S     +T + +I  +E
Sbjct: 990  KLFHSFSQVDASTSRKYGGTGLGLAISRMLVEQMGGRIWVESEMGSGSTFHFQIKVEE 1047



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 86/273 (31%), Gaps = 27/273 (9%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
           ++   L       ++ +D+     W  +S+++    +G++      E      E  ++R 
Sbjct: 60  TLLDDLISDNPCCLFLQDRGLRYTW--LSFERPPGMDGLLALGKTDEDIFSPAEADRQRR 117

Query: 253 ISSSALEK--NFCETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQ 304
           I    +E        V   + G  +    V          + G AG   DV++      Q
Sbjct: 118 IKERVIETGNPARGEVHISKDGMEQYLDYVYYPWQDEDGRTLGVAGCIKDVTERRIAQIQ 177

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L    + + +   AI +FD    +++ N   ++    D A      S   + +F     K
Sbjct: 178 LQRMVQSVESSPTAIVLFDFEGRIEYVNPLLLQSCGYDDASPVMGWS---IFDFTNEDGK 234

Query: 365 -------LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                  +P  L+   W+  +       +     ++        +   S      +  F 
Sbjct: 235 SKLREVIIPVLLSQGNWQGELPIQGTDGQ-----YYTAEMICTRIAAYSGGSVYFLANFC 289

Query: 418 NLTVQVDLETKYNTLVKVQGET--IDHLSEGVA 448
           +L+  +  E          G    ++ + E   
Sbjct: 290 HLSDSMRAEEALLLDESGLGALLQLNPMDEAFL 322



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 31/173 (17%)

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           W   +G+TL          G     +++T +   + +   +V+    +++     + +F 
Sbjct: 151 WQDEDGRTL----------GVAGCIKDVTERRIAQIQLQRMVQ----SVESSPTAIVLFD 196

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            +GRI+  NP        ++     G  I +        +   DG      +I      +
Sbjct: 197 FEGRIEYVNPLLLQSCGYDDASPVMGWSIFD--------FTNEDGKSKLREVIIPVLLSQ 248

Query: 512 KSLQGTL-------ELLSDSVLEYSIIPLPNAQTMLTFVNVT--DSVRAERAL 555
            + QG L       +  +  ++   I                  DS+RAE AL
Sbjct: 249 GNWQGELPIQGTDGQYYTAEMICTRIAAYSGGSVYFLANFCHLSDSMRAEEAL 301


>gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 409

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 147/362 (40%), Gaps = 40/362 (11%)

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
              + E   L       +   TC R        ++    +T+  D    + G    LS  
Sbjct: 48  EYHQPELILLDIMMPGIDGFETCRRLKANPLTCEIPIIFLTALSDSNNKVNG----LSVG 103

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------D 566
            ++Y   P  + + +             R L ++ + L +                   +
Sbjct: 104 AVDYISKPFQSEEVLARIRIHLKLYNLTRKLEQQKQLLEEKVKLRTVELLAAKEAAEAAN 163

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+ ++S+ELR+PL  IIG++++L+              ++ I  + T LL L+ND
Sbjct: 164 IAKSQFLANMSHELRTPLNAIIGYSEMLQEEAEDLAQEDLIPDLKRIHGAGTHLLGLIND 223

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ +++G ++L   T+ ++ L+ E+   +   + +N   + V     LG    D  +
Sbjct: 224 ILDLSKIESGKVELYLETVNISLLIREIIIMVRPLVEKNANVLVVDCADNLGYMKTDLTK 283

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARD-------NGD--------FIFSVKNNGSSIP 731
           + Q    +LSNA  F+ KG  + +K  ++       NG+         +F V + G  I 
Sbjct: 284 VRQSLFNLLSNACKFTKKG-KITIKVEKEYRKSGTLNGEEHKSAILYILFKVTDTGVGIS 342

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + +F  F        R   G GLGL+I +    + GG + + S     +T    +P
Sbjct: 343 PERMEKLFQPFTQADASTTREYGGTGLGLAITKKLSRIMGGDIFVESEVGKGSTFTILLP 402

Query: 790 SK 791
           ++
Sbjct: 403 AE 404


>gi|239787555|emb|CAX84024.1| Sensor protein [uncultured bacterium]
          Length = 595

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 174/389 (44%), Gaps = 22/389 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +F  ++V +    K    ++   ++I+     + +   +GRI+  NP F  +        
Sbjct: 207 LFRRISVPLIEGEKAMGELRKLHQSIEQSPLMIFITDREGRIEYVNPRFCEIT------- 259

Query: 475 SPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDS---VLEYSI 530
             G  +  +     R  N  D   + FA + ++    R+      +   D      +   
Sbjct: 260 --GYSVDEVIGRNPRILNSGDMPREFFAELWSTLLSGRQFKAEIKDRRKDGSSFWAQIVT 317

Query: 531 IPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P+ N + ++T       ++T   +AE+A     E    A+  K   + ++S+ELR+PL 
Sbjct: 318 SPVRNKEGLITHFVAVHEDITQRKQAEQATQAAREQAEIANRAKTELLANMSHELRTPLN 377

Query: 586 NIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            IIGF++ +K    G L ++K  +Y E I+AS   LL L+NDILD++ ++AG   L    
Sbjct: 378 AIIGFSEGMKLQLFGPLGSAKYEEYAEDINASGQHLLKLINDILDVSAIEAGKTTLQEEL 437

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + + ++     + +  +  + ++ + + +   L   +AD +R+ QI   +LSNA+ F+ +
Sbjct: 438 LNVVEIAETSLRLVRARAEKGSVSLFLEASDGLPPLLADGRRIKQILLNLLSNAVKFTPE 497

Query: 705 GSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
           G  V LKA  D  G    +V + G  + E         F  V      +  G GLGL + 
Sbjct: 498 GGRVTLKAGIDEVGRLHLAVADTGIGMDEKELTLAMTEFGQVDGGLDRRHEGTGLGLPLT 557

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +HGG  S+ S     TT +   P+
Sbjct: 558 KGLVEIHGGIFSVESKKGHGTTASAIFPA 586



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 59/168 (35%), Gaps = 23/168 (13%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           I++ + +      +L   ++ +    + I I D+   +++ N  F E+    +  +    
Sbjct: 211 ISVPLIEGEKAMGELRKLHQSIEQSPLMIFITDREGRIEYVNPRFCEITGYSVDEVIGRN 270

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-- 408
                   + ++  +P +   + W   +      +E         +G +    + ++P  
Sbjct: 271 P------RILNSGDMPREFFAELWSTLLSGRQFKAEIKD---RRKDGSSFWAQIVTSPVR 321

Query: 409 -RGGTIWMF----ENLTVQVDLETKYNT-------LVKVQGETIDHLS 444
            + G I  F    E++T +   E              + + E + ++S
Sbjct: 322 NKEGLITHFVAVHEDITQRKQAEQATQAAREQAEIANRAKTELLANMS 369



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 53/181 (29%), Gaps = 33/181 (18%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           ++ +K    +       +    +++  D+ G I + N  +    E  G    + IG + +
Sbjct: 216 IEGEKAMGELRKLHQSIEQSPLMIFITDREGRIEYVNPRF---CEITGYSVDEVIGRNPR 272

Query: 243 LFKE-------------------EIKKRMISSSALEKNFCETV--STLEHGNNKSYKIVR 281
           +                      + K  +        +F   +  S + +        V 
Sbjct: 273 ILNSGDMPREFFAELWSTLLSGRQFKAEIKDRRKDGSSFWAQIVTSPVRNKEGLITHFVA 332

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLT-------VAIAIFDQNRYLQFHN 332
           V     +   A   ++      ++ +  +   L N++        AI  F +   LQ   
Sbjct: 333 VHEDITQRKQAEQATQAAREQAEIANRAKTELLANMSHELRTPLNAIIGFSEGMKLQLFG 392

Query: 333 R 333
            
Sbjct: 393 P 393


>gi|27468286|ref|NP_764923.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251811086|ref|ZP_04825559.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875887|ref|ZP_06284754.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|293366361|ref|ZP_06613040.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315832|gb|AAO04967.1|AE016748_201 alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251805383|gb|EES58040.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294912|gb|EFA87439.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|291319486|gb|EFE59853.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737291|gb|EGG73545.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU028]
          Length = 565

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 166/377 (44%), Gaps = 40/377 (10%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         T++++   V +    G I ++N A+  ++   +  +  
Sbjct: 210 DLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYQVFN-PDQMVEN 268

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
            ++I  I  +  +             II SF  E+   + L+  +  +     + S IP+
Sbjct: 269 KSYIGFIDDSIEKL------------IIESFRTEKVIYEQLEVAINNVHTKYFDVSCIPI 316

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                      V         +      L+K + ++  FV +VS+EL++P+T+I GF + 
Sbjct: 317 LTKSKKNLQGMVV--------VLHDITNLQKLENLRREFVANVSHELKTPITSIKGFAET 368

Query: 594 LKTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           L     G+ N +QS   ++  I   S  + +LV D+LDL+ ++    +L  + + L++L 
Sbjct: 369 LIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIEQQK-ELEINYMNLSELA 424

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             +  ++ T+ +   I+I+   +  +    A   ++ Q+ + +LSNA+++SS+ + VI++
Sbjct: 425 INIIDNLQTQAYNKRIKIQSEIEKDVI-IEAHENKIAQVITNLLSNAINYSSEDNKVIVR 483

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
             R++      +++ G  I E   K +F RF            G GLGLSI +  +  H 
Sbjct: 484 VYRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHN 543

Query: 770 GHVSISSSDEGVTTINC 786
           G + + S+    +    
Sbjct: 544 GRIDVKSAPGKGSIFKV 560


>gi|332667571|ref|YP_004450359.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336385|gb|AEE53486.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 857

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 164/387 (42%), Gaps = 27/387 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS------PGTH 479
           ET+   L +     I+   + +      G+I   N A  ++      +L         T 
Sbjct: 194 ETRGKLLSEYARSLIEASLDPLITISTKGKITDHNEALANITGKTRQQLIGSDFSLYFTE 253

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITS-----------FDDERKSLQGTLELLSDSVLEY 528
               +      + +    +    II             + DE+ ++ G + +  D   + 
Sbjct: 254 PEKASEVYEEVFEKGFVTNYPLTIIDGELTNVLFNGSVYKDEKGNVLGAVVVARDITAQK 313

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            I        +   +    +  A+ +     +    A + K  F+ ++S+E+R+P+  II
Sbjct: 314 RIESELIEAKVFAELAKGIAETAQSSAESATQIAVDAVKAKQQFLSNMSHEIRTPMNAII 373

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GFT ++  ++   L++KQ +Y+  I  S   L+ L+NDILDLA VDAG M    +   L 
Sbjct: 374 GFTKVVLKTE---LSAKQKEYLTAIKMSGDALIVLINDILDLAKVDAGKMDFEETPFRLA 430

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG-- 705
             +  +     TK+ E N+ +  + D ++    V D  RL QI   ++SNA+ F++KG  
Sbjct: 431 FSITAMLHLFETKIQEKNLALVKVYDEEIPEVLVGDPVRLHQIILNLVSNAVKFTNKGQI 490

Query: 706 --STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
             S  +L A  D     F+V + G  I +D   ++F  F   +    R   G GLGL+I 
Sbjct: 491 TVSVRMLHADADKVTIEFAVADTGIGITKDKIPTIFENFQQASSGTSRLYGGTGLGLAIA 550

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  +   GG + + S  E  +T +  +
Sbjct: 551 KQLVEKQGGTIRVESVVEQGSTFSFIL 577


>gi|270307587|ref|YP_003329645.1| sensor kinase, two-component system, OmpR family [Dehalococcoides
           sp. VS]
 gi|270153479|gb|ACZ61317.1| sensor kinase, two-component system, OmpR family [Dehalococcoides
           sp. VS]
          Length = 581

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 151/377 (40%), Gaps = 28/377 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +T ++       ++        +  + +G+ +   +G I L NPA   ++K E   +
Sbjct: 230 FRLMTERLRDSIKAVSSERDRLSAVLQRMGDGIFLLDREGVISLLNPASERIFKLEAEGV 289

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPL 533
              + +  I         + +   +F    +S   E     G +EL +    L     PL
Sbjct: 290 IGHSFVEAI--------RDHEIHSVFEHARSSGKQE----MGFVELAAGRRFLGIIATPL 337

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +    L              L +    LR+ ++++  FV ++S+ELR+P++++   T+ 
Sbjct: 338 VSQSGYLV-------------LVQDLSELRRLEKVRRDFVANISHELRTPISSLKLLTET 384

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+     S  +  + +++ I      L  LV ++ DL+ +++G   L      ++  +  
Sbjct: 385 LQEGA-ASDPAVAAGFIDKIHLEVDKLAQLVTELSDLSAIESGQAVLRLQPGDISTAIKL 443

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + +  +     I + V     L     D  R+ Q+   ++ NA+ F+ KG  + + A 
Sbjct: 444 AAERLRPQAERAGISLGVELPETLPQVKLDENRVEQVLVNLVHNAIKFTPKGGRIKIGAR 503

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +  V ++G  IPE+    VF RF          G GLGL+I +  +  HGG + 
Sbjct: 504 TQGQTLVVYVSDSGIGIPEEDLTRVFERFYKVDKARSSGGTGLGLAISKHIVQAHGGTIW 563

Query: 774 ISSSDEGVTTINCRIPS 790
             S      T +  +P 
Sbjct: 564 AESVYGKGATFSFSLPL 580



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 49/135 (36%), Gaps = 18/135 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V+ +      +L  +   I + D+   +   N +   +++++   +  +      +E 
Sbjct: 242 KAVSSERDRLSAVLQRMGDGIFLLDREGVISLLNPASERIFKLEAEGVIGH----SFVEA 297

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNG-QTLHVIVTSN-PRGGTIWM 415
           +R                ++F   +SS   +  +  L  G + L +I T    + G + +
Sbjct: 298 IRDHEI-----------HSVFEHARSSGKQEMGFVELAAGRRFLGIIATPLVSQSGYLVL 346

Query: 416 FENLTVQVDLETKYN 430
            ++L+    LE    
Sbjct: 347 VQDLSELRRLEKVRR 361


>gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 661

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/632 (19%), Positives = 253/632 (40%), Gaps = 55/632 (8%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG--IVFQKAIGESRKLFKEEIKK 250
             ++ L +++  ++   D  G I + + + +K   T    +V ++         +E I++
Sbjct: 27  DFYRALVENVGDILTILDCDGVITYQSPAVRKAMGTSEDLLVGRRIADLVHPDDRERIER 86

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRV-------LNSFGEAGIAIDVSKEITVND 303
           R+   + +  +    +  L H N    ++           +  G   ++ DV++   +  
Sbjct: 87  RIAECARVPGSEVLELVRLPHLNGTWRRLETRGCNLIGDPDVAGILCVSRDVTETHMLES 146

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQ-----FHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +L    +        +A F   R+++       +R    +  ++   L   P+  +  E 
Sbjct: 147 KLREAEQ--------LARFGHWRWVKGEPAPQWSRGVARILGLEEGQL---PAAGDWYEH 195

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHLPNGQTLHVIVTSNPR------- 409
           L      PE  +           +++ E       +   +G   ++   +          
Sbjct: 196 LVH----PEDRD--ELLSQFIDAFETHEPVNSITRFRAGDGNYRYIKTYAYAEADAYSEI 249

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G  + + E++  +V+ E              +  S+ VA +  + ++   +PA   +   
Sbjct: 250 GALVGLAEDVHEEVEAELALKASEAKYRLMTEQASDVVAHYDAESKVIFISPAVEPILGR 309

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +            I+       +     D F   ITS +      +   +      LE +
Sbjct: 310 KAEEFIGNP----ISEEMIHREDFPRARDAFIQCITSGESVHFDYRFLHKDGHYVWLEST 365

Query: 530 IIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +    +      A+ +    ++++  R E  L +  E    A   K+ F+ ++S+ELR+P
Sbjct: 366 MRRACDTDGRQTAEVIGITRDISERKRHEMELLDARERAETASRTKSRFLANMSHELRTP 425

Query: 584 LTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           L  IIGF+++L+    G+L + + ++Y + I+ S  +LL+L++DILD++ ++AG  +L+ 
Sbjct: 426 LNAIIGFSEILRMQMFGALGHPRYTEYAQLINESGALLLDLISDILDMSKIEAGKYELHP 485

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            T+    L+    + +  +  EN I +  K+      G+ VAD + L QI   +LSN+  
Sbjct: 486 ETVDAAALIESCVRLVRGRAEENGIHLVKKIQCAELGGTLVADERALKQIMLNLLSNSAK 545

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
           F+  G  + +          F+V + G  IP D    +   F          + G GLGL
Sbjct: 546 FTPAGGRISVALTETEETICFAVADTGRGIPADQIARLGQPFEQIATDAALSKEGTGLGL 605

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++V S   LHGG ++I S     TT+   +P 
Sbjct: 606 ALVRSLAELHGGSMAIDSELGVGTTVTVTLPK 637



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 81/303 (26%), Gaps = 27/303 (8%)

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
               G+A    + S              ++ N+   + I D +  + + + +  +     
Sbjct: 4   PADKGQAAKQSETSAGEFRAASGDFYRALVENVGDILTILDCDGVITYQSPAVRKAMGTS 63

Query: 343 LAFLATNPSNDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
              L      D +   +  R   ++ E          +  + +    +  TW     +  
Sbjct: 64  EDLLVGRRIADLVHPDDRERIERRIAECARVPG--SEVLELVRLPHLNG-TWRRLETRGC 120

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           ++I       G + +  ++T    LE+K     ++              FG   R     
Sbjct: 121 NLIGDP-DVAGILCVSRDVTETHMLESKLREAEQLAR------------FG-HWRWVKGE 166

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           PA +               +           +  D  +L +  I +F+        T   
Sbjct: 167 PAPQWSRGVARILGLEEGQLPAAGDWYEHLVHPEDRDELLSQFIDAFETHEPVNSITRFR 226

Query: 521 LSDSVLEYSIIPL--------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
             D    Y                  +    +V + V AE AL       R   E  +  
Sbjct: 227 AGDGNYRYIKTYAYAEADAYSEIGALVGLAEDVHEEVEAELALKASEAKYRLMTEQASDV 286

Query: 573 VQH 575
           V H
Sbjct: 287 VAH 289


>gi|218778728|ref|YP_002430046.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760112|gb|ACL02578.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1022

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 155/378 (41%), Gaps = 20/378 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +  +        +     ++ + EG       G     NP    +    +  LS G + R
Sbjct: 203 EYSISHDLRLSEEKHRTILESIEEGYYEVDLAGSFLFFNPGLCKILGYTKAELS-GKNYR 261

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-----A 536
            I    +         D++    T    +        +  S+  +E SI  + +     A
Sbjct: 262 EILTEKTAQIAYEKFSDVYR---TGEPSKVADWIMIKKDGSECAVEASISLIKDLNDKPA 318

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  +VT+++R   A  +K +    A   K+ F+  +S+E+R+PL  ++G  +L   
Sbjct: 319 GFRGVARDVTENLRLLEA-DQKRQLAEAASLAKSDFLARMSHEIRTPLNAVVGMAELASN 377

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K+   N    + +E I++ S  L+ LVN ILD + ++A  M+L      L  LL ++  
Sbjct: 378 EKM---NQNLKKIIETITSESNALVALVNRILDFSKIEAQKMELEEFPFDLGYLLEDIAD 434

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKA 712
           S+  + ++  +   +  + ++      D  R+ Q+ + ++ NA+ F+S+G   +   L+ 
Sbjct: 435 SMGLEAYKKGLEFILHINPEIPVQVKGDPGRIRQVLTNLIGNAIKFTSEGEVFVKAELET 494

Query: 713 ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
             D    I F +++ G  IPE+    +F  F        R   G GLG +I +  + L G
Sbjct: 495 RTDEKAIIKFHIQDTGIGIPEEKRGLIFEAFTQADDSTTRKYGGTGLGTTISKKIVELMG 554

Query: 770 GHVSISSSDEGVTTINCR 787
           G + + S +   +     
Sbjct: 555 GEIGLESREGCGSIFWFT 572


>gi|71906612|ref|YP_284199.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846233|gb|AAZ45729.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1064

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 110/557 (19%), Positives = 196/557 (35%), Gaps = 40/557 (7%)

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND------QLTHTYEILHN 314
               ++  +E    +   IV +L S    G+A     E+          +LT   + L N
Sbjct: 270 PTASSLDLVEQEFRRRL-IVLLLISLASVGLARLFLHEMLDRKFGATIKELTRLKKALDN 328

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +   I + D   + ++ N   + L+  D   L              S  +  +       
Sbjct: 329 VPAYIYLKDAAHHYRYANAKTLSLFGTDAESLKGKGDEHFFPPETVSRLRQVDAQVLAGK 388

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
             +           +  +H        +   +    G   +  ++T     E     L +
Sbjct: 389 NTDEIITITDEHGQRAIYHEIKAPLWELDEKTPW--GLCGISIDITQYRLAEEAVARLSR 446

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNE 493
                ++   E +     +G I+  N AF ++     E  +     I     T    Y+E
Sbjct: 447 ----AVEQSPESIVFTDLEGNIEYVNAAFLAITGYLREEVIGRNPRILQSGNTPRERYDE 502

Query: 494 SDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                    +      ++RK     LEL + S +      + N   +   +      + E
Sbjct: 503 MWATLKAGKVWRGELINKRKDGSEYLELATISPIRQPDGKISNYIAIKADITEQRKNQEE 562

Query: 553 ----------------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                           + L    EA   A   K++F+ ++S+E+R+P+  I+G   LL+ 
Sbjct: 563 LEKYRTGLERLVQQRTQELAVAKEAAEVASRAKSTFLANMSHEIRTPMNAIMGLGYLLEQ 622

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S    LN++Q   V  I  ++  LL+++ND+LDL+ ++AG M L+       + L  V  
Sbjct: 623 S---PLNTEQQDKVRKIHGAAKHLLSILNDVLDLSKIEAGKMTLDRCAYSPAEELTAVAS 679

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKA 712
            I        + +   +D      + D  RL Q       NA+ F+  GS      I + 
Sbjct: 680 MIGEDAQRKGLTVITETDDLPPFTIGDPTRLRQAILNFAGNAVKFTEHGSIRLRGEIAET 739

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             DN    FSV + G  I  ++   +F  F        RR  G GLGL+I     +L GG
Sbjct: 740 QPDNYLLRFSVSDTGPGIAPELQARLFTAFEQADSSSTRRLGGTGLGLAISRHLSHLMGG 799

Query: 771 HVSISSSDEGVTTINCR 787
              + S+    +T    
Sbjct: 800 DAGVDSTLGQGSTFWLT 816



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 92/281 (32%), Gaps = 29/281 (10%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              K       ++  K   D++   ++ +D A    +AN    K     G   +   G+ 
Sbjct: 308 LDRKFGATIKELTRLKKALDNVPAYIYLKDAAHHYRYANA---KTLSLFGTDAESLKGKG 364

Query: 241 RK-LFKEEIKKRMISSSA---LEKNFCETVS-TLEHGNNKSYKIVRVL-------NSFGE 288
            +  F  E   R+    A     KN  E ++ T EHG    Y  ++           +G 
Sbjct: 365 DEHFFPPETVSRLRQVDAQVLAGKNTDEIITITDEHGQRAIYHEIKAPLWELDEKTPWGL 424

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLA 347
            GI+ID+++     + +      +     +I   D    +++ N +F+ +   +    + 
Sbjct: 425 CGISIDITQYRLAEEAVARLSRAVEQSPESIVFTDLEGNIEYVNAAFLAITGYLREEVIG 484

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
            NP        +  +   P +   + W           E         +G     + T +
Sbjct: 485 RNP-------RILQSGNTPRERYDEMWATLKAGKVWRGELINK---RKDGSEYLELATIS 534

Query: 408 PR---GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           P     G I  +  +   +  + K    ++     ++ L +
Sbjct: 535 PIRQPDGKISNYIAIKADITEQRKNQEELEKYRTGLERLVQ 575


>gi|119715576|ref|YP_922541.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536237|gb|ABL80854.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 682

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 169/399 (42%), Gaps = 23/399 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETID-HLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            I +   ++ Q++   +           ++      +      GR+ L NP    L    
Sbjct: 283 VIPLVLTVSEQLEHARQAAAERDKVQNIVNGTAGVAIIGTDEHGRVTLFNPGAERLLGYR 342

Query: 471 ENR-----LSPGTHIRNIAATCSRYYNESDGWDLFAAII---------TSFDDERKSLQG 516
            +      +        I+   +     +D   +  ++I            D E +S   
Sbjct: 343 ADEVLGRLIREFHSADAISEKAAELGVAADFGVVARSLIGQGATDMRFLRKDGEERSHSM 402

Query: 517 TLELLSD---SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +L  + D    V+ Y        + +     + +++  ER      E LR+ D++K++FV
Sbjct: 403 SLNRIEDDRGRVIGYVSTSEDITERVEAEGRLVEALETERQ---AVERLREVDQVKDAFV 459

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             VS+ELR+P+T+I+G+T++L+    G L  +Q   V  ++A+ST LL+L+ND+L L+ V
Sbjct: 460 SSVSHELRTPITSILGYTEMLEDGVYGDLGREQLDAVRRVAANSTRLLSLINDLLTLSRV 519

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
               + +      L  +++     +A  +   ++ +      +   F+ DR  L ++   
Sbjct: 520 QEDEIGIVDRVFDLRSVVSAGTAVVAPTLERRSLELTAELPDEPVPFLGDRDMLERVVIN 579

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQR 751
           +  NA  F+ +G  + ++      + +  V + G  IP    + +F+RF  ++       
Sbjct: 580 LAGNAAKFTPEGGRIGVRLLVGPEESVIEVSDTGIGIPHQEQERLFSRFFRSSLAQERAI 639

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI  + +  HGG +S+ S     TT    +P+
Sbjct: 640 PGSGLGLSIAHAIVEKHGGTMSVDSEPGEGTTFRVHLPA 678



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 77/225 (34%), Gaps = 23/225 (10%)

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCE---TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
           E+       +   +  ++     F +          G         V+ +     + + V
Sbjct: 231 EALAQLITTLGFAIPLTTWGHGPFADAGPRFQMSVDGQGILLATYGVVCALVVIPLVLTV 290

Query: 296 SKEITVNDQLTHTYEILHNL---TVAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           S+++    Q     + + N+   T  +AI   D++  +   N     L       +    
Sbjct: 291 SEQLEHARQAAAERDKVQNIVNGTAGVAIIGTDEHGRVTLFNPGAERLLGYRADEVLGR- 349

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQ----TLHVI 403
               L+    SA+ + E+        +   V +S      T   +   +G+    ++ + 
Sbjct: 350 ----LIREFHSADAISEKAAELGVAADFGVVARSLIGQGATDMRFLRKDGEERSHSMSLN 405

Query: 404 VTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              + RG   G +   E++T +V+ E +    ++ + + ++ L E
Sbjct: 406 RIEDDRGRVIGYVSTSEDITERVEAEGRLVEALETERQAVERLRE 450


>gi|110632533|ref|YP_672741.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            sp. BNC1]
 gi|110283517|gb|ABG61576.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans
            sp. BNC1]
          Length = 1192

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/581 (20%), Positives = 229/581 (39%), Gaps = 36/581 (6%)

Query: 224  KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
            + ++  G      + ++   F++E ++        E +  +  S  +     +     V 
Sbjct: 626  RQSKAAGGEASDPVPDTEAHFEQEEEQTYREPEETEDSLQQAASGSKEQGPAAEPDETVP 685

Query: 284  NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-D 342
                +               + T    IL +L + + I   +  L + NR F  L    D
Sbjct: 686  QRRSQIAYLPSAFHRPEAERKQTEAETILAHLPLPVLIHSGD-RLHYANREFYRLTGYAD 744

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL----PNGQ 398
            LA L +      L E         E     + K+ +              HL     +G+
Sbjct: 745  LAELESAGGLGALFE---------EPAAGNSPKKTLLLRMADGTDRPVEAHLQSVAWDGR 795

Query: 399  -----TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                  LH  + + P             +     +    +      +D  ++G+AV G D
Sbjct: 796  KALMLALHPAMQAEPT----------PEEAAKAAELEARLSEMRAIVDTATDGIAVIGND 845

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            G I+  N    +L+  +   ++ G    ++ A  S+   +     L    + S  ++ + 
Sbjct: 846  GTIRSINRPAEALFGFDAENVT-GKPFSSLFAIESQRTVQDYLAGLSDNGVASVLNDGRQ 904

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            + G         L  +I  LPN         ++T   RAE  LT+      +A   K+ F
Sbjct: 905  VIGRESQGRFIPLFMTIGRLPNGSGYCAVLRDITHWKRAEEDLTQARAQAERASSQKSEF 964

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLA 631
            +  VS+E+R+PL  IIGF++L+   K G + N +   Y+  I+ S   +L+LVND+LD++
Sbjct: 965  LARVSHEIRTPLNAIIGFSELMIDEKFGPIGNDRYRDYLRDINRSGNHVLDLVNDLLDIS 1024

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
             ++AG  ++ +  + LND L +V   +  + +   + I+     +L   VAD + + QI 
Sbjct: 1025 KIEAGQQEMAHEAVPLNDTLAQVIAMMQPQANRERVIIRSSLASRLPDVVADLRSVRQIA 1084

Query: 692  SKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRG 749
              +LSNA+ ++  G  V++      +G  +  V++ G  +           F   NA R 
Sbjct: 1085 INLLSNAVRYTPAGGQVVVSTVYERDGSVVLRVRDTGVGMSSAELDEALKPFRQINALRR 1144

Query: 750  QRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +R  G GLGL +  + +  +    SI+S+    T +    P
Sbjct: 1145 KRGDGTGLGLPLTRAMVEANRAQFSIASTPGEGTLVEIIFP 1185



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 104/361 (28%), Gaps = 28/361 (7%)

Query: 88  GKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAET 147
           G++  PE+     ++      +                      E  ++E Q++    ET
Sbjct: 613 GEEVRPELEADAPRQSKAAGGEA----------SDPVPDTEAHFE--QEEEQTYREPEET 660

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV--LFDSLDFL 205
           ++       G      A     ++    S++A       +        +   +   L   
Sbjct: 661 EDSLQQAASGSKEQGPAAEPDETVPQRRSQIAYLPSAFHRPEAERKQTEAETILAHLPLP 720

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR-------MISSSAL 258
           V        + +AN  + + T    +   ++ G    LF+E            +  +   
Sbjct: 721 VLIHSGD-RLHYANREFYRLTGYADLAELESAGGLGALFEEPAAGNSPKKTLLLRMADGT 779

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
           ++     + ++     K+  +        E       +K   +  +L+    I+   T  
Sbjct: 780 DRPVEAHLQSVAWDGRKALMLALHPAMQAEPTPEE-AAKAAELEARLSEMRAIVDTATDG 838

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           IA+   +  ++  NR    L+  D   +   P +     F   + +  +          +
Sbjct: 839 IAVIGNDGTIRSINRPAEALFGFDAENVTGKPFSSL---FAIESQRTVQDYLAGLSDNGV 895

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQG 437
            SV                  L + +   P G G   +  ++T     E    T  + Q 
Sbjct: 896 ASVLNDGRQVIGRESQGRFIPLFMTIGRLPNGSGYCAVLRDITHWKRAEEDL-TQARAQA 954

Query: 438 E 438
           E
Sbjct: 955 E 955


>gi|154498538|ref|ZP_02036916.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC
           29799]
 gi|150272606|gb|EDM99791.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC
           29799]
          Length = 589

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 164/393 (41%), Gaps = 35/393 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID-HLSEGVAVFGPDGRIKLSNP 461
           + + +  G     F N+  Q+    +     + +  T+  H+++GV  F  DG +   NP
Sbjct: 216 VASKDEIGVLTGTFNNMARQLRDTIREAENERNKLGTLFLHMTDGVVAFSRDGAVIQCNP 275

Query: 462 AFRSL----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           A   +         + ++  T   +IAA  S    E  G+          D ER+     
Sbjct: 276 AAERMLHRTIPVGGDEVTYDTLFGDIAALPSVLAVEQPGY---------LDGERE----- 321

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              +  ++LE  + P  +       V + D                K +E++  FV +VS
Sbjct: 322 ---IDGTILELLLAPFSSESAGGVMVVIHDVTEQR-----------KTEEMRREFVANVS 367

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLTNI  + + L  +      + +  ++  I   S  + ++V D+L L+  D+G 
Sbjct: 368 HELRTPLTNIRSYAETLVDNAGELPPNMEKNFLGVILNESDRMTHIVQDLLTLSRFDSGH 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L  +       + +V  ++      +   +++  +  L + + DR+R+LQ+   ++SN
Sbjct: 428 SELKLAPFSFEGAIRDVYNAVLLDAQRHGHTLRLGIEENLPNILGDRERILQVMMNVVSN 487

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ ++  G ++ + A R        V +NG  IP      +F RF         +  G G
Sbjct: 488 AIKYTPDGGSIAISAGRLRDRVWMEVADNGIGIPAADRPRIFERFYRVDKARSRESGGTG 547

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSI +  I+ H G + +   D    T+   +
Sbjct: 548 LGLSIAKEIIDRHEGVIRLVDKDGPGLTVRVEL 580



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 18/136 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
               ++      +  ++T  +  F ++  +   N +   +    +       + D L   
Sbjct: 241 REAENERNKLGTLFLHMTDGVVAFSRDGAVIQCNPAAERMLHRTIPVGGDEVTYDTLFGD 300

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---GGTIWM 415
           + +   LP          ++ +V +    + D     +G  L +++        GG + +
Sbjct: 301 IAA---LP----------SVLAVEQPG--YLDGEREIDGTILELLLAPFSSESAGGVMVV 345

Query: 416 FENLTVQVDLETKYNT 431
             ++T Q   E     
Sbjct: 346 IHDVTEQRKTEEMRRE 361


>gi|163846813|ref|YP_001634857.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524634|ref|YP_002569105.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163668102|gb|ABY34468.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448513|gb|ACM52779.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 537

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/384 (25%), Positives = 169/384 (44%), Gaps = 30/384 (7%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC---- 487
            + V+   +        V  PD RI+ +      L          G H+ ++        
Sbjct: 2   SLSVEQRVLIETGSAYVVVDPDLRIQSAGGMLALLGGKPPI----GGHLLDLLPELFGNE 57

Query: 488 -----------SRYY------NESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYS 529
                       R Y         DG  L+  ++T    D+   + G +++++D+     
Sbjct: 58  AALDEILHGERDRLYLPLINRQMPDGSTLYIDLLTIPLTDKDGRITGLIQIVTDTTQRSV 117

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I  L + Q     +      R    L   N +L K  +IK+ F+  +S+E+R+PLT I+G
Sbjct: 118 IEQLRSQQRNELQLLKDRLQRQNVELARINASLLKTTKIKDEFLASMSHEIRTPLTAILG 177

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             DLL+   +G L+ +Q   ++ I   S  LL+L+ND LD+A V+AG M+L+ + + + D
Sbjct: 178 MVDLLRAQLVGPLSDEQMGAIDGIKKGSQHLLSLINDYLDIAKVEAGRMELDLTPVSVQD 237

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           +   ++  +A  +   N+ +    D  +   +AD +RL QI   +LSNA+ F+  G  V 
Sbjct: 238 VCMSLRPLVADLIRRANLSLIFDIDSAVQVILADARRLRQILINLLSNAIKFTPAGGKVG 297

Query: 709 -ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
             ++   + G   F+V + G  I  +    +F  F       Q+   G GLGL++V   +
Sbjct: 298 LEVRGEPERGAVRFTVWDTGIGISAEDAVRLFEPFQQIESERQKEVTGSGLGLALVAKLV 357

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            LHGG V + S     +  +  +P
Sbjct: 358 RLHGGSVRVESEVGVGSRFHVTLP 381


>gi|293371966|ref|ZP_06618367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292633084|gb|EFF51664.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 500

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 111/517 (21%), Positives = 214/517 (41%), Gaps = 45/517 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR-SFVELWEIDLAFLATNPSNDELLE 357
           +  N Q  +  ++L+ L   + I D NR +   N+ +F EL             +  +  
Sbjct: 1   MEANGQTLYNDDLLNILPDGVIILDINREVIQLNQQAFTEL-----------HVHSSVNA 49

Query: 358 FLRSANKLPEQLNWKTW--KENIFS-VYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG- 411
            +     LP    +K    KE+I S + +     K  + LP    +   V  T  P  G 
Sbjct: 50  MM----PLPTNKIFKLLNKKEDILSTILEEIRQGKKVYSLPEHTFMQEQVDYTQFPIRGE 105

Query: 412 ------------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI--K 457
                        ++ F N+TV++  E   NT ++       +     + F  D R    
Sbjct: 106 FATMENEEGEKNILFFFRNITVELTQEYILNTALQRTRIYPWYYDISRSEFTLDDRYFEH 165

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L  PA  +   T E  ++   H  +       +  +  G   F   +  F   R    GT
Sbjct: 166 LGIPAGENNTLTMEEYVNM-IHPDDRQTMADAFVVQLSGNTTFDKTV-PFRLRRG--DGT 221

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            E         + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S
Sbjct: 222 WEWFEGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMS 281

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++DILDL+ +++  
Sbjct: 282 HEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNT 341

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +K  YS   L  ++ ++++      +   I IK I          D  RL Q+    ++N
Sbjct: 342 IKFTYSNYSLKSIMKDIEKE-QVVKNVPEIEIKAILPDDDIYITTDATRLKQVICNFINN 400

Query: 698 AMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           A  F+ +G      +    ++      V++ G  IP++  K +F+RF        ++G G
Sbjct: 401 ARKFTEEGYIHFGFMVNPENDDSVCLFVEDTGEGIPQECQKEIFDRFYKVNTF--KQGTG 458

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGLSI ++ +    G +S+ S     +     +P ++
Sbjct: 459 LGLSICKTIVEHLQGSISVVSEVGRGSRFTVTLPLEK 495


>gi|124268874|ref|YP_001022878.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124261649|gb|ABM96643.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 833

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/511 (19%), Positives = 183/511 (35%), Gaps = 31/511 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  +                 IA    +  L   N  F E+            S DEL
Sbjct: 180 AAESALRASEERWRHSFEMAGAGIAQTGADGRLLEVNARFCEI---------VGRSRDEL 230

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRGGTIW 414
           L         P+ L             +    +++  +L P+G TL V +T       + 
Sbjct: 231 LAGSFRELTHPDDLADDEDLLRRLVAGQVLRENREKRYLRPDGTTLWVQLTVTAVFDALG 290

Query: 415 MFE-------NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV---FGPDG--RIKLSNPA 462
            F+       ++  +   E        +  +  D +  GV +       G  R+  ++  
Sbjct: 291 RFQHTVTVALDIDQRRRAEAALQEREALFTKLADRVP-GVLLQFNVDAQGVARVPYASRG 349

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            R L++ + +          I             W+         +      +  L    
Sbjct: 350 LRELFELDPDGAVRDDARLMIERVAK--GQRKRVWETLERAGQRLEPWAIEFEVDLPSRG 407

Query: 523 DSVLEYSIIP--LPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYE 579
              +E    P  LP+  T         + R +  A     +A  +A+E K  F+  +S+E
Sbjct: 408 RRAVEAQGSPERLPDGSTTWHGYIRDITDRKQADAALMNAQAAARANEAKTEFLSRMSHE 467

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  ++GFT LL       L   Q   + +I  +   LL ++ D+LDL+ ++ G + 
Sbjct: 468 LRTPLNAVLGFTQLLLGDPSAPLQDGQRARLGHIERAGQHLLAMIGDVLDLSRIETGSLP 527

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    + L+ L++E    +    H + + +     G L    AD  RL Q+   +LSNA+
Sbjct: 528 LQPQPVGLSALVSESFALVLPTAHASGVTLIRRGPGDL-HVTADPMRLRQVLVNLLSNAV 586

Query: 700 DFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLG 757
            ++  G  V+++    D      +V + G  +       +F  F    A R    G GLG
Sbjct: 587 KYNRSGGQVVVETEGIDEHTVRIAVTDTGMGMTPAQQLHLFEPFNRLGAERSSIEGTGLG 646

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I    + L  G +S+ S     +T +  +
Sbjct: 647 LAITLRLVELMDGRISVHSQPGSGSTFHVEL 677



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 78/277 (28%), Gaps = 44/277 (15%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQ 234
           +       L      ++  F+     +      G +L  N  +     +   E     F+
Sbjct: 177 QRRAAESALRASEERWRHSFEMAGAGIAQTGADGRLLEVNARFCEIVGRSRDELLAGSFR 236

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG------E 288
           +          E++ +R+++   L +N  E       G     ++               
Sbjct: 237 ELTHPDDLADDEDLLRRLVAGQVLREN-REKRYLRPDGTTLWVQLTVTAVFDALGRFQHT 295

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTV---AIAI---FDQNR--YLQFHNRSFVELWE 340
             +A+D+ +       L     +   L      + +    D      + + +R   EL+E
Sbjct: 296 VTVALDIDQRRRAEAALQEREALFTKLADRVPGVLLQFNVDAQGVARVPYASRGLRELFE 355

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +D                +R   +L  +   K  ++ ++   + +    + W +     L
Sbjct: 356 LDPD------------GAVRDDARLMIERVAKGQRKRVWETLERAGQRLEPWAIEFEVDL 403

Query: 401 HVIVTSN----------PRGGTIWM--FENLTVQVDL 425
                            P G T W     ++T +   
Sbjct: 404 PSRGRRAVEAQGSPERLPDGSTTWHGYIRDITDRKQA 440



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 9/151 (5%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I   +    +   E+      +    + +    G+A  G DGR+   N  F  +    
Sbjct: 167 GIIASVQLDRQRRAAESALRASEERWRHSFEMAGAGIAQTGADGRLLEVNARFCEIVGRS 226

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            + L  G   R +        +E     L A  +   + E++ L+     L    ++ ++
Sbjct: 227 RDELLAG-SFRELTHPDDLADDEDLLRRLVAGQVLRENREKRYLRPDGTTL---WVQLTV 282

Query: 531 IPLPNA-----QTMLTFVNVTDSVRAERALT 556
             + +A      T+   +++    RAE AL 
Sbjct: 283 TAVFDALGRFQHTVTVALDIDQRRRAEAALQ 313


>gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 732

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 14/305 (4%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           G+ L   I  + D    S + T+ LL    L  S++ L  A  ++  +       AE+AL
Sbjct: 281 GYPLAVNITITEDLYLSSWRSTVRLLGGIGL-VSLLALCGAFILMAIILKRREQDAEQAL 339

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T K E   +A+  K+SF+  +S+E+R+P+  I+G  +L+  +    L++ Q  Y   +  
Sbjct: 340 TLKRE-AEEANTAKSSFLAMMSHEIRTPMNGILGMAELMLDT---PLDASQRTYAGNVYN 395

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L+ ++N+ILD + V++G M+++ +T     L+ EV            ++I+     
Sbjct: 396 GAHHLMRIINEILDFSKVESGYMEIDLTTFDPTRLIGEVIGLHRNGATAKQLQIRTEIAP 455

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD-----FIFSVKNNGS 728
                V AD  R+ Q+   +++NA+ F+  G+ TV   A  D  D       FSV ++G 
Sbjct: 456 AAALLVSADASRIRQVLGNLINNAIKFTPAGAITVRFVALPDPADATQVQLEFSVADSGI 515

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +  + +F  FV   +    +  G GLGL+I +  + L  G +   S     T  + 
Sbjct: 516 GISAEAQQRLFEPFVQADNTISRKYGGTGLGLAICKRLVELMRGDIRCESDIGAGTRFSF 575

Query: 787 RIPSK 791
           RIP++
Sbjct: 576 RIPAR 580


>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
 gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
 gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2062

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 20/251 (7%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             E    A   K+ F+ ++S+E+R+P+  IIG TDL   ++   L ++Q +Y+  + +S+ 
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTE---LTAEQREYLSMVQSSAG 1393

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL ++NDILD + ++AG ++L+ +   L   L +  ++++ + H+  I +       + 
Sbjct: 1394 SLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVP 1453

Query: 679  -SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFI--FSVKNNGSSIPE 732
             S + D  RL QI + ++ NA+ F+S+G     V ++ +   G+ +  FSV + G  IP+
Sbjct: 1454 DSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFSVIDTGIGIPK 1513

Query: 733  DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--- 787
            D    +F  F         +  G GLGL+I    + L  G +S+ S     +T       
Sbjct: 1514 DKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTAQF 1573

Query: 788  ------IPSKE 792
                  +P  E
Sbjct: 1574 PTSPNQLPLTE 1584


>gi|71907206|ref|YP_284793.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846827|gb|AAZ46323.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 841

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/412 (23%), Positives = 175/412 (42%), Gaps = 48/412 (11%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            TI +   +  +   +       + + E     ++EG  +   +G I   N AF  +   
Sbjct: 214 ATILLLHYIARRRTADLLRVEEGRRENEMAFAAMAEGAVITDSEGTILWVNDAFCQISGY 273

Query: 470 --------EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                       L  G H R+  A   R   ++  W           ++RK+ +   E +
Sbjct: 274 AREEVIGANPRILKSGVHDRDFYAALWRQLMQTGHWR------GEIWNKRKNGEIYPEEI 327

Query: 522 SDSVLEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNEALRKA------------- 565
           S   L       PN    + +  F ++T+  + ER L   +E L +              
Sbjct: 328 SMQALRA-----PNGSIHRYISIFSDITERKKTERELASHHERLEEQVRERTEELSVARD 382

Query: 566 -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                ++ K++F+ ++S+ELR+PL  +IGF+ L++      L   Q + +E I+ S   L
Sbjct: 383 QAEAANQSKSAFLANMSHELRTPLNAVIGFSQLMEKDP--GLLPVQQRNLEIINHSGRHL 440

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+NDIL+L+ +++G +++      L  LL +V + +  +  +  +++K+ +       
Sbjct: 441 LTLINDILELSKIESGKLRMTTEETDLRLLLEQVVEMMHLRAQQLGLQLKLETTNLPPLI 500

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCK 736
           V D     QI   +LSNA+ F+ KG   +  AA           FSV++ G  I E+  +
Sbjct: 501 VIDPGMFRQILLNLLSNALKFTPKGEVCLHVAAEAVSAQQSRIRFSVRDTGIGISENDRE 560

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F+ F       Q  G GLGL+I   ++ + GG +S+ S     +  +  I
Sbjct: 561 RIFSSFEQVGPMHQ-GGTGLGLTISRRYVEMLGGELSVDSELGNGSDFHFTI 611



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 103/348 (29%), Gaps = 59/348 (16%)

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
           E ++  H+ ++  +     R  G+   LV  T     + I+G+V G           G+ 
Sbjct: 55  EKFIPPHNSLEEEERLNAERSNGERLRLVTVTPIHLLLAIQGQVRGD---------SGLQ 105

Query: 176 SELAETTLKC------KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
             L    L+          +  +       D +   +  +   G +              
Sbjct: 106 ERLTSKQLRNIGNAPDAWETQALEALSRGGDMVTEALPKKGGHGLM-------------R 152

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-NSFGE 288
            ++  +   E  +  ++ +    +            ++T       +++++R        
Sbjct: 153 AMIPMRMEKECLECHRDTLVP--VGGLRGGATVSIDLNTYRSAQEPTWRVIRYWHTGIWL 210

Query: 289 AGIA----------IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
            GIA             +  + V +           +     I D    + + N +F ++
Sbjct: 211 LGIATILLLHYIARRRTADLLRVEEGRRENEMAFAAMAEGAVITDSEGTILWVNDAFCQI 270

Query: 339 WEI-DLAFLATNPSN--DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL- 394
                   +  NP      + +    A    + +    W+  I++  K+ E + +   + 
Sbjct: 271 SGYAREEVIGANPRILKSGVHDRDFYAALWRQLMQTGHWRGEIWNKRKNGEIYPEEISMQ 330

Query: 395 ----PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
               PNG               I +F ++T +   E +  +  +   E
Sbjct: 331 ALRAPNGSIHRY----------ISIFSDITERKKTERELASHHERLEE 368


>gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 869

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 167/381 (43%), Gaps = 17/381 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++  ++ + +  T   +  +  +    G       D R+  S+ A+R    T+E+     
Sbjct: 338 ISAILESQARLRTSQAILEQAQNIGHMGSWQLDLTDNRLTWSDEAYRIFGATQEDFEPSY 397

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLP 534
                I     R   E            S++ E + +      +  + +  +        
Sbjct: 398 ERFLAIVHPDDRAAVEHAYASSIEESRESYEIEHRIVRRDDEEIRFVIERCVHERDALGT 457

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +++    ++TD   AE+AL    EA   A + K+ F+ ++S+E+R+PL  ++G   LL
Sbjct: 458 VIRSVGMVQDITDRKNAEQALERAKEAAESASQAKSEFLANMSHEIRTPLNGVMGILQLL 517

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +TS  G    +Q Q+      S+  L  L++DILDL+ V+AG + +      L++ L +V
Sbjct: 518 ETSAEGQ---EQKQFCTLALQSANRLNRLLSDILDLSRVEAGKLHIQSEPFRLHETLVQV 574

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA- 712
                    ++ + ++   D  L  S V D  RL Q+   ++ NA  F++ G  V ++A 
Sbjct: 575 LDLFVPTAVQSGVELRHHVDPGLPNSIVGDPIRLQQVLGNLIGNAFKFTTTG-YVNVEAY 633

Query: 713 ---ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
              A+  G     FSV + G  I +   K++F  F   +  +    +G GLGLSI +  +
Sbjct: 634 PLPAKHPGQLRIFFSVSDTGCGISDKDLKNLFTPFTQVSQGYAKSHQGAGLGLSICKHLV 693

Query: 766 NLHGGHVSISSSDEGVTTINC 786
            L GG++++ S     TT + 
Sbjct: 694 TLMGGNMAVESETGVGTTFSF 714


>gi|282916952|ref|ZP_06324710.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319439|gb|EFB49791.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus D139]
          Length = 554

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDPQS-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGEGSTFKVIL 549



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNT 431
            ++T    LE     
Sbjct: 319 HDITNLKQLENLRRE 333


>gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 645

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +    + E  L +   A   A+  K+ F+ ++S+E+R+P++ ++G T+LL       L
Sbjct: 238 HEIRMRQQVETDLAQAKCAAEAANTAKSQFLSNMSHEIRTPMSGVLGMTELL---GFTEL 294

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q +Y+  I AS+  LL+++NDILDL+ ++AG ++L  +   L   +         ++
Sbjct: 295 TPEQHEYLNDIKASADNLLSIINDILDLSKIEAGKIELEAANFSLQQCIRTTTAMQMPRI 354

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
            E +++I+     ++   V  D+ R+ QI   +LSNA+ F++ G   I    L++  ++ 
Sbjct: 355 LEKHLQIETKISPEIPEVVNGDQLRVKQILLNLLSNAVKFTAHGQISIQASLLESRNEHL 414

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
               SV + G  I  +    +F+ F        R   G GLGL+I      L GG + + 
Sbjct: 415 LVQISVSDTGVGIAAEALDRIFDPFTQADASTSRKFGGTGLGLAICRQLAELMGGGIRVE 474

Query: 776 SSDEGVTTINCRIPSK 791
           S +   +  + R+P K
Sbjct: 475 SEEGKGSRFHLRLPFK 490


>gi|170737061|ref|YP_001778321.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169819249|gb|ACA93831.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 1237

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 115/606 (18%), Positives = 219/606 (36%), Gaps = 49/606 (8%)

Query: 210 DQAGDI-LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           D    + +  N  Y++       +  +A+    K  ++ I+ R +          +T   
Sbjct: 284 DLDSRLSIAVNRRYERLI----PLIDRALAAIPKREQQRIRSRWLWPRYSAGLPWKTFEL 339

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
           +  G       +          +   ++ E  + DQL+    ++ +L   +   D     
Sbjct: 340 VLLGTAIVLATITTAYVRLRREVRRRLAVEHELADQLSFREALMESLPYPLVAKDSANRY 399

Query: 329 QFHNRSFVELWEIDLAFLATNPSND-ELLEF--LRSANKLPEQLNWKTWKENIFSVYKSS 385
              N ++   + +    L    + D   L+    R  + + E++  +    +       S
Sbjct: 400 IALNHAYETAFSVKRDELIGKTTLDASPLDHQWNRRIHAMSERVQDQQQPHHAEVSLMDS 459

Query: 386 ETHKDTW-------HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           +  + +W        LP+G+           GG +    ++T   D E +   L +    
Sbjct: 460 DQKQRSWLYWMHPFQLPSGKP----------GGLLVTLVDVTTIRDAEQRARALDQRLRR 509

Query: 439 TIDHLSEGVAVF----GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
              HL     VF     PDG ++     +          L   T   +     SR + + 
Sbjct: 510 VTAHLPA--VVFELRRTPDGVLRF---PYVGGNTHAMWDLDAQTMEDDALTVLSRVHPDD 564

Query: 495 DGWDLFAAIITSFDDERKSLQGT-LELLSDSVLEYSIIPLPNAQTML----TFVNVTDSV 549
                 A   ++   +R S+    L    +  +     P       +     + +VT   
Sbjct: 565 RPLIKSAVKHSALTMKRVSIDFRCLSHGCERWIHTEATPQTEHDGTIFWSGVWSDVTHIK 624

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
              + L    EA   A   K  F+  +S+E+R+P+  I+G  +LL+     SL+ KQ + 
Sbjct: 625 AQAKELAHAKEAAELAAASKARFLATMSHEIRTPMNGIVGMLELLRHE---SLSLKQQRM 681

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S+  L+ +++D+LD + +DAG +++      L  LL+ V     T  H+  + +
Sbjct: 682 LHMIGESAMTLMQILDDVLDFSKIDAGQLEIVNEPTDLRALLDGVSAVAGTLAHDKGLVV 741

Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVK 724
           +  +S         D  RL QI   +LSNA+ F+  G       I+          F+V 
Sbjct: 742 RNFVSHRLAAELEIDGLRLRQILFNLLSNAIKFTESGEVGIRVEIIDCRNACQRVRFTVH 801

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I     + +F  F        RR  G GLGL+I +  + L  G + I S+    T
Sbjct: 802 DTGIGITPAQLQCLFAPFTQADTSISRRFGGTGLGLAICKRLVELMQGSIRIESTPRIGT 861

Query: 783 TINCRI 788
            +    
Sbjct: 862 HVIVEF 867


>gi|312875839|ref|ZP_07735829.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797320|gb|EFR13659.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 575

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 162/371 (43%), Gaps = 34/371 (9%)

Query: 425 LETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE K N    L K     +D L  G+  F  + RI + N    ++    E  L  G  + 
Sbjct: 224 LEEKINESNVLRKRLTSLLDSLDIGIIFFDVNKRILMFNRGAENIL---ETNLKVGFSLL 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTML 540
                C+R Y      +LF  +     +E++             LE SI       +   
Sbjct: 281 E----CARVY------ELFEFLFQQDINEKE-------------LEVSINNKTKFLKVSK 317

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++  D+      +      L+K + I++ FV +VS+EL++PLT+I GF + LK   + 
Sbjct: 318 KRISYEDNKEGVLFILSDITFLKKLERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID 377

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +   ++++  I      L+ L+ND+L L+ ++   M +    +V+ +++ E  + +  
Sbjct: 378 DKDV-ATKFLNIIEVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKI 436

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K  + +I++ V     L   +  R  L QIF  ++ NA+ ++ +   V +   + +    
Sbjct: 437 KAEKKDIQLDVKVQEGLEMNIY-RDWLKQIFINLIDNAIVYNKENGKVWVTVEKSDSTVT 495

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             VK+ G  IPE   + +F RF        R   G GLGLSIV+  + L+GG V + S +
Sbjct: 496 IKVKDTGIGIPEKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQE 555

Query: 779 EGVTTINCRIP 789
              +     IP
Sbjct: 556 GIGSEFTVTIP 566


>gi|163757825|ref|ZP_02164914.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285327|gb|EDQ35609.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 788

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/395 (25%), Positives = 168/395 (42%), Gaps = 36/395 (9%)

Query: 405 TSNPRGGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           T +P         + T ++ +  +   TL        D LS+ +A    +GRI  +N  F
Sbjct: 127 TPDPDRSKAEHDSDRTWELGEFTSHLTTL-------FDGLSDMIAACDLEGRIIFANETF 179

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R    TE                       +      A   T    +R+ + G  E  S 
Sbjct: 180 RLAIGTENP------------------VGLTLAQAGVAPTQTDGTGQRELVLGEGEAQSV 221

Query: 524 SVLEYSIIPLPNAQTMLTFV---NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                +I   P +  M       NVT + +AE  L E  E    A   K  F+  VS+E+
Sbjct: 222 WTWRETIARDPVSGKMFVHCVGRNVTATRKAEAELVEALERAEAASHAKTRFLATVSHEI 281

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+G T LL  ++      +Q+ Y+     S   LL+L+ D+LD+ +++AG + L
Sbjct: 282 RTPLNGILGMTHLLSQTE---TTPEQASYIRNARESGQSLLSLIEDLLDVTSIEAGRLNL 338

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAM 699
                 L++L++ V + +A+K HE NI I V         +A D  R+ QI   ++ NA+
Sbjct: 339 REEEGDLSELVHGVCELMASKAHEKNIEIAVHIAVDAPQRIASDIGRVRQILFNLVGNAI 398

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
            F+  G  V+++ + +N   +FSV + G  + E     +F  F    +    +  G GLG
Sbjct: 399 KFTESGG-VLVEVSLENAALVFSVTDTGPGLKETDKAKIFEEFERADNGPTRKHGGAGLG 457

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LSI    +   GG + + S+    +  +  +P  +
Sbjct: 458 LSISARIVEALGGEIGVDSTPGKGSKFHFSVPIAD 492



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 63/213 (29%), Gaps = 24/213 (11%)

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
                 A      L        ++++  L K   +  S  +    K  K     +     
Sbjct: 75  AAALSVAFDTPAALLASVAGISVVAAMPLLKRPADPSSAADKPGRKPIKANMTPDPDRSK 134

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
               D  +   + +  +H   +   L+  IA  D    + F N +F       LA    N
Sbjct: 135 AEH-DSDRTWELGEFTSHLTTLFDGLSDMIAACDLEGRIIFANETFR------LAIGTEN 187

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           P    +   L  A   P Q +    +E +    ++    +  W      T    +  +P 
Sbjct: 188 P----VGLTLAQAGVAPTQTDGTGQRELVLGEGEA----QSVW------TWRETIARDPV 233

Query: 410 GGTIWMF---ENLTVQVDLETKYNTLVKVQGET 439
            G +++     N+T     E +    ++     
Sbjct: 234 SGKMFVHCVGRNVTATRKAEAELVEALERAEAA 266


>gi|115372454|ref|ZP_01459763.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370667|gb|EAU69593.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 498

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 161/404 (39%), Gaps = 39/404 (9%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              E +  +        +D ++  + +  P G + L N     L+         G   R 
Sbjct: 95  RASEQEARSERLRLDLILDSVANPIILTDPSGSMVLMNDPAERLFSAPA---GSGEASRR 151

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-----------ELLSDSVLEYSII 531
              T   +++      L       +  E   ++ T            ++L+D     SI+
Sbjct: 152 RVRTNDAHFSSFLSHLLSQGSARRWRGELHLMEPTTGTPLPMEAVASKVLTDQGETTSIV 211

Query: 532 PLPNAQTM--------------------LTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            L + +T                            +       L  +   L +A   K+ 
Sbjct: 212 TLLHDRTETREKARLLEQLKTASSELEAKVHTATAELAEQNEKLRRQALQLEQASAAKSQ 271

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E R+PL  I+G+T++L     G +   Q + ++ I ++   LL ++N+ILD+ 
Sbjct: 272 FLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQKRNLQRIDSNGRHLLQVINEILDIT 331

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG M LN S   L +LL EV   +   +    + +      +L    +DRQ++ QI 
Sbjct: 332 RIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKLVVDAALPPRLPEVHSDRQKVKQIV 391

Query: 692 SKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
             +LSNA+ F+ +GS + + A         + SVK+ G  I ++  + +F  F       
Sbjct: 392 LNLLSNALKFTHEGS-IQVNAEYQPSLSLVLISVKDTGIGIAQEHQEKIFEDFQQVDSSP 450

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                G GLGLSI      + GG +++ S+    +T    +P +
Sbjct: 451 TRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTFTLHLPRR 494



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 23/141 (16%)

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--- 283
           E      ++A+  ++ LF   +       ++  +    ++     G +  +++V      
Sbjct: 4   EGASEGHRRAVELNQHLFTTALASAATGGASTVRRRELSLVDPLQGTDLLFELVTTPMRE 63

Query: 284 --------------NSFGEAGIAIDVS------KEITVNDQLTHTYEILHNLTVAIAIFD 323
                            G A  A+  S       E     +      IL ++   I + D
Sbjct: 64  AQGVVGVVSVLRNVTDLGRATQALGESYRRLRASEQEARSERLRLDLILDSVANPIILTD 123

Query: 324 QNRYLQFHNRSFVELWEIDLA 344
            +  +   N     L+     
Sbjct: 124 PSGSMVLMNDPAERLFSAPAG 144


>gi|83647357|ref|YP_435792.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635400|gb|ABC31367.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 935

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 143/374 (38%), Gaps = 26/374 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +D   +         E    L + +       + ++ NPA+  L               N
Sbjct: 551 IDQSQRLEKAETRYQELFTGLKQVIFQVDKAYQWQVLNPAWSGLTGETP---------EN 601

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKS------LQGTLELLSDSVLEYSIIPLPNA 536
                  +Y   D  D     +       +S          L+L     +E  +    +A
Sbjct: 602 AIGREMFHYIHPDDCDKLREALQKISRLEESSLFLELRLNALQLERAPWVEIHLQRSKDA 661

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              +   +   +  +ER          + D +KN F+  VS+ELR+PLT I G   LL +
Sbjct: 662 TGKMDGYSGFIADISERK---------RLDILKNEFISTVSHELRTPLTAINGSLALLDS 712

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +LG L  +  Q +    ++   LL L+ND+LD+  +++G ++ ++    L DL+ E   
Sbjct: 713 GRLGLLPDQAKQMLHIAYSNCERLLRLINDLLDIQKIESGGLEFSFERADLRDLIEEALN 772

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +      + ++ +   +        ADR RL Q+   ++SNA+ FS     V L      
Sbjct: 773 ANRQLAEKASVTLVFATPESPALVKADRDRLRQVLDNLISNAIKFSPADEAVTLTLNAHA 832

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
             +  +V++ G  +P +    +F +F        R   G GLGLSI    +  H G +  
Sbjct: 833 HYWEVAVQDQGPGVPPEFRNKIFQKFAQADSSDTRLKGGTGLGLSISREIVQRHHGQIGY 892

Query: 775 SSSDEGVTTINCRI 788
            S      T   R+
Sbjct: 893 HSEANCGATFYFRL 906


>gi|57235028|ref|YP_180886.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57225476|gb|AAW40533.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 581

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 153/377 (40%), Gaps = 28/377 (7%)

Query: 416 FENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +T ++       ++        ++ + +G+ +   +G I L NPA   ++K E   +
Sbjct: 230 FRLMTERLRDSINAVSSERDRLSAVLERMGDGIFLLDCEGTISLLNPAAERIFKLEAEHV 289

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPL 533
              + +  I         + +   +F    +S   E     G +EL S    L     PL
Sbjct: 290 IGHSFVEAI--------RDHEIHSIFEHSKSSGKQE----MGFVELASGRRFLGIIATPL 337

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +    L              L +    LR+ ++++  FV ++S+ELR+P++++   T+ 
Sbjct: 338 VSQSGYLV-------------LVQDLSELRRLEKVRRDFVANISHELRTPISSLKLLTET 384

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+        +  + ++E I      L  LV ++ DL+ +++G   LN     ++  +  
Sbjct: 385 LQEGAASDA-AVAAGFIEKIHLEVDKLAQLVTELSDLSAIESGQAVLNLQPGDISTAIKL 443

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               ++ +     I + V     L     D  R+ Q+   ++ NA+ F+ KG  + + A 
Sbjct: 444 AAARLSPQAERAGISLGVELPETLPQVKLDENRIEQVLVNLVHNAIKFTPKGGRIKIGAR 503

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +  V ++G  IPED    VF RF          G GLGL+I +  +  HGG++ 
Sbjct: 504 TQGQILVVYVSDSGIGIPEDDLTRVFERFYKVDKARSGGGTGLGLAISKHIVQAHGGNIW 563

Query: 774 ISSSDEGVTTINCRIPS 790
             S      T +  +P 
Sbjct: 564 AESRYGKGATFSFSLPL 580



 Score = 41.5 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 18/134 (13%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V+ +      +L  +   I + D    +   N +   +++++   +  +      +E +
Sbjct: 243 AVSSERDRLSAVLERMGDGIFLLDCEGTISLLNPAAERIFKLEAEHVIGH----SFVEAI 298

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNG-QTLHVIVTSN-PRGGTIWMF 416
           R                +IF   KSS   +  +  L +G + L +I T    + G + + 
Sbjct: 299 RDHEI-----------HSIFEHSKSSGKQEMGFVELASGRRFLGIIATPLVSQSGYLVLV 347

Query: 417 ENLTVQVDLETKYN 430
           ++L+    LE    
Sbjct: 348 QDLSELRRLEKVRR 361


>gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 870

 Score =  277 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/417 (21%), Positives = 174/417 (41%), Gaps = 35/417 (8%)

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVA 448
           +T HLP+G  +         G    +F  ++V ++          +      ++ +E + 
Sbjct: 215 ETVHLPSGDEI---------GDVGRVFNEMSVDLERSQVALQQAEEKYRGIFENATEAIF 265

Query: 449 VFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI---- 503
              P  G     NP+   +        S    + ++     + Y      + F  +    
Sbjct: 266 QRTPGKGHFLTVNPSMVRMLGYA----SEKELLTSVTDIGRQLYVRPKDHEEFERVLAEQ 321

Query: 504 --ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             I  F+ E      +   +S S                  V+VT+    E+A     + 
Sbjct: 322 GRIVGFETELYRKDRSTVWVSASARRVPGTSGGGYYYEGLLVDVTERREKEKA-ERAKDT 380

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A + K+ F+ ++S+E+R+P+  I+GFT LL        + +Q  Y++ I +S   L+
Sbjct: 381 AEAASKAKSEFLANMSHEIRTPMNAILGFTSLLS---PLITDPRQKNYLQSIQSSGKNLM 437

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +L+NDILDL+ ++AG M++ Y  +VL  +  ++++  +  + +  ++        +    
Sbjct: 438 SLINDILDLSKIEAGKMEIQYEPVVLRSVFVDLEKVFSWIIQDKGLQFITSIASDVPECV 497

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDM 734
           + D  RL QI   ++ NA+ F+  G  + L A R+ G        +  V++ G  I  + 
Sbjct: 498 LLDEVRLRQILFNLVGNALRFTESG-WIRLSAWREAGAGDGSFCLVMVVEDTGMGIQPEA 556

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F   + +  R   G GLGL+I +S + + GG +S+ S     +    R+P
Sbjct: 557 HNRIFESFRQQSGQRARVYGGTGLGLTISKSLVEMLGGTISVQSRPGAGSVFEIRLP 613


>gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 123/273 (45%), Gaps = 15/273 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLT 585
            +I     +  L       + R E A  +  E  R+A   +  K+ F+ ++S+E+R+P+ 
Sbjct: 123 RVIRHARGRFKLEMELRVSNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMN 182

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG   LL +     L ++Q  YV+ I  S   LL L+N ILD + ++AG ++L+Y   
Sbjct: 183 GVIGMASLLLSE---DLTAEQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPF 239

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSK 704
              +L+ EV   +  +    N+ +       + +    D  RL Q+   ++ NA+ F+  
Sbjct: 240 SPRELVQEVVLLLQPQAAAQNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEV 299

Query: 705 GST-VILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
           G   + L  A  +         F+VK++G  IP +    +F RF         +  G GL
Sbjct: 300 GGVAIELSPAPADPAAPEFSCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGL 359

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I    + L GG V + S     +T    +P
Sbjct: 360 GLAICRRLVELMGGEVGVESEVGKGSTFWFTVP 392


>gi|182418974|ref|ZP_02950230.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|182377257|gb|EDT74825.1| sensory box histidine kinase [Clostridium butyricum 5521]
          Length = 572

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 169/408 (41%), Gaps = 34/408 (8%)

Query: 386 ETHKDTWHLPNGQT-LHVIVTSNPRGGTIW-MFENLTVQVDLE-TKYNTLVKVQGETIDH 442
           E    T  + NG   +   V SN   G +   F ++  ++ L+  +            + 
Sbjct: 193 ELESVTLKMANGDYKIRAKVNSNDELGILGDSFNHMADELQLKIQEVVNNQTKLESIFNS 252

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +  GV     +  +   NPA   L   +++ +  G  + +  +         D  +    
Sbjct: 253 MDSGVVAVDNENNVISINPAAELLLGIKKSIV--GEKLTDYVSDHEINGFLMDSEEEDKE 310

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I      ER       E++   +         N   +++F ++TD  R E          
Sbjct: 311 ITILHPIERNIKIKKSEMIDKKI---------NLGKVISFQDITDMKRVEL--------- 352

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
                +++ FV +VS+EL++PLT+I GF + L+   +   ++ + ++++ I   +  L  
Sbjct: 353 -----MRSQFVANVSHELKTPLTSIKGFAETLR---IVDDSATREKFLDIIDKEAERLTR 404

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDIL L+ +++  +  +        ++ E    +       N+ ++   D      + 
Sbjct: 405 LINDILVLSNIESN-LVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFE-DNSSECILG 462

Query: 683 DRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           DR +  Q+   ++ NA+ +S  K   V + +  D G +   +++NG  IP++    +F R
Sbjct: 463 DRDKFYQLVLNLIENAVKYSKEKEGYVKISSHNDGGYYHLKIEDNGIGIPDEDISRIFER 522

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F       ++ G GLGL+IV+  + +  G +++ S     TT   +IP
Sbjct: 523 FYRVDKSRKKGGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 570


>gi|331700441|ref|YP_004397400.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329127784|gb|AEB72337.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 617

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 153/390 (39%), Gaps = 30/390 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   +     + +    + ++++GV      G + + N    S   
Sbjct: 239 GQLASAVNNLSVRVEESHESTESERRRLDSVLANMTDGVLATDRRGNVIIINETAASFLD 298

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +EN+ + G  I ++     + Y+  D  +    +I  F  E  SL          VL  
Sbjct: 299 LDENQ-AMGKSILDVLDI-RKDYSLRDLLEKPDELILDFSSEDHSL----------VLHA 346

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
               +      ++ +        E+          + D+ +  FV +VS+ELR+PLT++ 
Sbjct: 347 HFSLIQRESGFISGLVCVLRDITEQQ---------RIDQDRKQFVSNVSHELRTPLTSVR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             ++++     +  ++ ++ND+L L+ +D+G  K+    + +N
Sbjct: 398 SYIEALSDGAWKD-PKLAPKFLKVTQDETDRMIRMINDLLTLSRMDSGTQKMEVELVNIN 456

Query: 649 DLLNEVKQSIATKMH-----ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           +L N V       +      E    IK     +      D  R  Q+   +++NA+ +S 
Sbjct: 457 ELFNYVLNRFDMILKKEDHPEKTYTIKRYFTKRDLWVDLDTDRFTQVLDNLMNNAIKYSP 516

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
            G  +  +        I SV + G  IP      +F+RF         Q+ G GLGL+I 
Sbjct: 517 DGGVITCRLYETRNKVILSVSDQGLGIPRKDIPHIFDRFYRVDKARSRQQGGSGLGLAIS 576

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  +    G +   S +   +T    +P +
Sbjct: 577 KETVEALHGQIWAESVEGKGSTFYIALPYE 606


>gi|325262786|ref|ZP_08129522.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
 gi|324031880|gb|EGB93159.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
          Length = 723

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 189/491 (38%), Gaps = 42/491 (8%)

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
           +N  L + N++  E   +    L      + +       +  P   N    ++  +    
Sbjct: 65  ENYDLLYVNQTSCETLGLPREKLIGCKCYEAIQGR---TSPCPFCTNDCLTEDEFYEWEY 121

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            ++  +  + L +     +I     +       +NL+ +  LE K       +   +  +
Sbjct: 122 YNQFLRHRYFLKD----RIIEWEGKKVRLELSHDNLSSEYKLEKKDRE----REAILRTI 173

Query: 444 SEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-CSRYYNESDGWDLFA 501
             G A     D R  L            +          NI  + C+  + +        
Sbjct: 174 PGGFARVDARDMRTVLW-----YGGGFLKMIGYTRDEFENILHSKCTYVHPDDIERAAKV 228

Query: 502 AIITSFDDERKSLQGTLELLSDSV----LEYSIIPLPNAQ---------TMLTFVNVTDS 548
             I+    E  +++G +     +V    + YS +   N+           +       + 
Sbjct: 229 MEISRETGEDTAVEGRIITRDGTVKILTMTYSYVSAENSWDGIESFYSVGIDVTKEREEQ 288

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R  +AL E  +  R A+  K +F+  +S+++R+P+  I+G T + K +       K   
Sbjct: 289 ERQSKALEEAYQTARVANSAKTNFLSSMSHDIRTPMNAIMGMTTIAKANL--DSKEKVCS 346

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I  SS  LLNL+N++LD++ +++G + L    + L++LL  V +     + + +  
Sbjct: 347 CLDKIDTSSQHLLNLINEVLDMSKIESGKIDLTLEEVNLHELLKSVSEICRPLISQKHQE 406

Query: 669 IK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIF 721
            +  I+  +    +AD +RL Q+   +LSNA+ ++ +G  + L+             + F
Sbjct: 407 FRSSIAQVRHKEVIADGERLKQVMLNLLSNAIKYTPEGGRISLRINELYSPNPKKSQYEF 466

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           S  + G  I ED    VF  F         + +G GLG++I E+ + +  G + + S   
Sbjct: 467 SCIDTGIGISEDFRPYVFEPFWRAEDPRISKSQGTGLGMAITENIVRMMNGTIRVESKTG 526

Query: 780 GVTTINCRIPS 790
             +     IP 
Sbjct: 527 AGSKFTASIPL 537


>gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1326

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 158/400 (39%), Gaps = 39/400 (9%)

Query: 415 MFENLTVQVDLETKYNTLVKV------QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +  NL  +  LE      +++          +  + EG+A     G I   NPA   +  
Sbjct: 421 LNANLATRKLLERTQQQAIEIAETEEKSRLILGSVDEGIAGMDAKGYITFINPAGADMLG 480

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-- 526
            ++  +        I      +Y  SDG              R ++ G    + D VL  
Sbjct: 481 YDQAGIVGAHLHSTI------HYAHSDGSPYSRD---DCPMYRTAITGEACAVDDEVLWR 531

Query: 527 --------EYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                   EY+  P+        T++ F ++T+  + E  L    EA   A   K+ F+ 
Sbjct: 532 KDGGAFPAEYAATPVLKDGRAVGTVVAFRDITERKKNEAELRRAREAAEDATRTKSDFLA 591

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG + L   +   +L+ +Q  Y+  I  SS  LL ++NDILD + ++
Sbjct: 592 NMSHEIRTPMNAIIGMSHLALKT---NLSPQQRDYLNKIQISSHHLLGVINDILDFSKIE 648

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693
           AG + +      L  +L  +   I  K     + +       +    + D  RL QI + 
Sbjct: 649 AGKLNVESIDFSLEKVLETLANLIGEKASAKGLELIFDISPDVPHNLIGDPLRLGQILTN 708

Query: 694 ILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             SNA+ F+  G  VI    ++  D      F+V++ G  +  +    +F  F       
Sbjct: 709 YASNAVKFTEHGEIVIGAKVQERTDDEVLLYFAVRDTGLGLTAEQKARLFQSFQQADTST 768

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            R   G GLGL+I +    L  G V + S     +T    
Sbjct: 769 TRKHGGTGLGLAISKQLSALMHGEVGVESEPGKGSTFWFT 808



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 9/150 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            + I + +    +  IL ++   IA  D   Y+ F N +  ++   D A +     +  +
Sbjct: 436 QQAIEIAETEEKSRLILGSVDEGIAGMDAKGYITFINPAGADMLGYDQAGIVGAHLHSTI 495

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RG-- 410
             +  S      + +   ++  I    ++     +     +G        + P    G  
Sbjct: 496 -HYAHSDGSPYSRDDCPMYRTAITG--EACAVDDEVLWRKDGGAFPAEYAATPVLKDGRA 552

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGET 439
            GT+  F ++T +   E +     +   + 
Sbjct: 553 VGTVVAFRDITERKKNEAELRRAREAAEDA 582


>gi|77919955|ref|YP_357770.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77546038|gb|ABA89600.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 827

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 112/646 (17%), Positives = 245/646 (37%), Gaps = 63/646 (9%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           + ++      V   +F +  F +W  D+  +I++ N   K+  +  G+   + +G   + 
Sbjct: 208 EWRRFFRRSQVLDAIFKAAPFGMWLLDRKKEIVFVN---KQMCDILGMSESQLLGRHHRE 264

Query: 244 F------KEEIKKRMISSS---ALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GE 288
                         +   +          E       GN ++Y+I+R   +       G 
Sbjct: 265 IGRHWGPDNPAVFALDDPAVYLTDGAVENEQSCWQVDGNMRAYRIIRTRVTGDDGQVEGL 324

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHN--LTVAIAIF--DQNRYLQFHNRSFVELWEIDLA 344
            G+A+D +        L        +  L+V   I+    +   ++ +     +      
Sbjct: 325 LGLAVDTTDCKKAERLLRQEERRFRDIALSVGDLIWEVGPDWRFRYVSERASSILGYKAD 384

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
            L        L E   +A     Q+ ++ W+EN     K+    +      +G+   +++
Sbjct: 385 ALIGK----SLAELDNAAAAEAWQVLFRDWEENP----KTFRNVEKWLQHKDGRRRCLML 436

Query: 405 TSNPR-------GGTIWMFENLTVQVDLETKYNTLV-------KVQGETIDHLSEGVAVF 450
           +  P        GG   + E++T +   E      +             I  +++ + V 
Sbjct: 437 SGLPIIEDDGSAGGFRGVAEDITERKQQEDNLKKALWEAEDGRDKIDSIIRSITDALVVI 496

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
               R+ L NP   +L+       +       +   C     ++    L   +     + 
Sbjct: 497 DDRQRVILLNPRAEALFGVTAAHAAGCL----LGELCPDAEVQNVIMTLLENLTDGGGEA 552

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
             +  G      D   +     + N Q   T   V         +       R+ + +K 
Sbjct: 553 CFAWPGGDSTSPD-YFKARASRMRNIQGDGTGAIV---------IFHDVTQEREMERVKT 602

Query: 571 SFVQHVSYELRSPLTNIIGFTD--LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            F+   ++ELR+PLT+I+G+ +  +      G  +++  +++  I   + +L  +V+D+L
Sbjct: 603 EFISTAAHELRTPLTSIMGYLEFCMHPEEFGGFSDAQLKEFMTEIYDKAEVLERIVSDLL 662

Query: 629 DLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           D++ ++AG  + L   T+ + ++  ++ Q    +       ++  + G      ADR++L
Sbjct: 663 DISRMEAGREIPLVLETVDVAEISRKLLQHFQLQFPRYRFEMEF-AAGTSHLVRADREKL 721

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-A 746
           +Q+   I+SNA+ +S +G  V +    +   +  SV++ G  +  +  + +F++F     
Sbjct: 722 VQVMENIISNAIKYSQEGKAVRVIGRCEPKCYRISVRDQGIGMTPEQIERMFDKFYRAVD 781

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                RG+GLG+ IV+  I  HGG + + S+    T I   +P  E
Sbjct: 782 LNSGVRGLGLGMHIVKHIIERHGGGIEVVSAPGAGTEIIFSLPLCE 827



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 86/289 (29%), Gaps = 45/289 (15%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           L G+  +  +     + L      F+ +  S+  L+W         + +   ++ +   G
Sbjct: 324 LLGLAVDTTDCKKAERLLRQEERRFRDIALSVGDLIWEVGPDWRFRYVS---ERASSILG 380

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALE-----KNFCETVSTLEH--GNNKSYKIVRVL 283
                 IG+S                  +     K F      L+H  G  +   +  + 
Sbjct: 381 YKADALIGKSLAELDNAAAAEAWQVLFRDWEENPKTFRNVEKWLQHKDGRRRCLMLSGLP 440

Query: 284 ------NSFGEAGIAIDVSKEITVNDQLT-----------HTYEILHNLTVAIAIFDQNR 326
                 ++ G  G+A D+++     D L                I+ ++T A+ + D  +
Sbjct: 441 IIEDDGSAGGFRGVAEDITERKQQEDNLKKALWEAEDGRDKIDSIIRSITDALVVIDDRQ 500

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            +   N     L+ +  A  A      EL          P+          + ++     
Sbjct: 501 RVILLNPRAEALFGVTAAH-AAGCLLGELC---------PDAEVQNVIMTLLENLTDGGG 550

Query: 387 THKDTWHLPNG--------QTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
                W   +         +   +        G I +F ++T + ++E 
Sbjct: 551 EACFAWPGGDSTSPDYFKARASRMRNIQGDGTGAIVIFHDVTQEREMER 599


>gi|207721961|ref|YP_002252399.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           MolK2]
 gi|206587133|emb|CAQ17717.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           MolK2]
          Length = 875

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 120/625 (19%), Positives = 228/625 (36%), Gaps = 57/625 (9%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
           + +    +    +W R     +L    +    T ++      A    R++          
Sbjct: 5   MLRRAL-AAPVHLWRRAGTA-LLLCATAIALLTASDYTQADDATRALRQMGPPPAPSAAA 62

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
             +         + TL   + +  ++ R                E T+  QL   + ++ 
Sbjct: 63  PMARCAPAAAIVLWTLTVLSIRHMQLRRETRQRRHT--------EATLARQLDFQHMLME 114

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELL---------EFLRSAN 363
           +L   +A  D        N +F  L+     A L   P++  L          +  R A 
Sbjct: 115 SLPFPLAAQDTQHRYVAVNAAFCHLFGRSREAVLGRTPAHLGLGCARTTACVQDIDRRAV 174

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE--NLTV 421
              +               +          LP+GQ         P G    + +  NL+ 
Sbjct: 175 ATGQDAREALTITAADGRERRVLYWVAPLRLPDGQ---------PGGTVASLIDLSNLSE 225

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVF-----GPDGRIKLSNPAFRSLWK--TEENRL 474
             + + +     +   ++I+ L   V           GRI+    + R      T+    
Sbjct: 226 IREAQARAKRQAQRLHDSIESLPALVCQVEMRPGTTRGRIRYMAGSARETLGAQTDAAPF 285

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL- 533
              +  R +     R  +++      A  +T  D   + + G     S   L    +P  
Sbjct: 286 LLPSPARLVHQDDRRRMHDAALQS--ATQLTPLDQPFRHVGGD---GSVRWLHAHALPHR 340

Query: 534 -PNAQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            P+ +T+ T      +    RA  L    +A   A   K+ F+  +S+E+R+P+  ++G 
Sbjct: 341 EPDGRTVWTGYLRDVTQERARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGL 400

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
               +      L  +Q + V     SS  LL++++DILD A ++AG + +  +   L +L
Sbjct: 401 V---ELLLQTPLEREQQRMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLREL 457

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            +     +A++ HE ++ ++V  D  +  +   D  RL Q+ S +LSNA+ F+ +GS  +
Sbjct: 458 FDSTVGLLASRAHERSLSVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHL 517

Query: 710 ----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
               + AA D    I  + + G  I  +   ++F  FV        +  G GLGL+I   
Sbjct: 518 SAACVGAATDTAHLIIRIADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQ 577

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
              L GG + + S+    TT+  R+
Sbjct: 578 LARLMGGSLDMDSTPGVGTTLTLRL 602



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 63/504 (12%), Positives = 133/504 (26%), Gaps = 63/504 (12%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           L    Y +   AT  LR+ G      A             V  +   L I  +  +  E 
Sbjct: 34  LTASDYTQADDATRALRQMGPPPAPSAAAPMARCAPAAAIVLWTLTVLSIRHMQ-LRRET 92

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
            +       L+  +    +L +SL F +  +D     +  N ++       G   +  +G
Sbjct: 93  RQRRHTEATLARQLDFQHMLMESLPFPLAAQDTQHRYVAVNAAFCHLF---GRSREAVLG 149

Query: 239 ESRKLFK---------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-----N 284
            +               +   R   ++  +     T++  +    +    V  L      
Sbjct: 150 RTPAHLGLGCARTTACVQDIDRRAVATGQDAREALTITAADGRERRVLYWVAPLRLPDGQ 209

Query: 285 SFGEAGIAIDVS-------KEITVNDQLTHTYEILHNLTVAIAIFD-----QNRYLQFHN 332
             G     ID+S        +     Q    ++ + +L   +   +         +++  
Sbjct: 210 PGGTVASLIDLSNLSEIREAQARAKRQAQRLHDSIESLPALVCQVEMRPGTTRGRIRYMA 269

Query: 333 RSFVELWEIDLA---FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            S  E          FL  +P+            +L  Q + +   +             
Sbjct: 270 GSARETLGAQTDAAPFLLPSPA------------RLVHQDDRRRMHDAALQSATQLTPLD 317

Query: 390 DTWHLPNG----QTLHVIVTSN--PRGGTIWM--FENLTVQVDLETKYNTLVKVQGETID 441
             +    G    + LH     +  P G T+W     ++T +           +     + 
Sbjct: 318 QPFRHVGGDGSVRWLHAHALPHREPDGRTVWTGYLRDVTQERARADALEAARQAAESAL- 376

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI---------RNIAATCSRYYN 492
           H  +              N     +    +  L               R +        +
Sbjct: 377 HAKDRFLATMSHEIRTPMNGVLGLVELLLQTPLEREQQRMVTLAQESSRALLHILDDILD 436

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            +       A+  +  D R+    T+ LL+    E S+         +      D +R  
Sbjct: 437 YAKIEAGHLAVTPAPTDLRELFDSTVGLLASRAHERSLSVRVEVDAAVPATVSVDGMRLR 496

Query: 553 RALTEKNEALRKADEIKNSFVQHV 576
           + L+       K  E  +  +   
Sbjct: 497 QVLSNLLSNAIKFTERGSVHLSAA 520


>gi|313500183|gb|ADR61549.1| GacS [Pseudomonas putida BIRD-1]
          Length = 917

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 143/328 (43%), Gaps = 20/328 (6%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV------LE 527
           L     I +         N+     L   + T    E   L   +  +++++      L+
Sbjct: 189 LRMSRTINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELAHGINRMAETLQNAHEELQ 248

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +SI    +  T     N+         L    +   +A  IK+ F+ ++S+E+R+PL  I
Sbjct: 249 HSI----DQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGI 304

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GFT LL+ S++     +Q  Y+  I  S+  LL ++N+ILD + ++AG + L+     L
Sbjct: 305 LGFTHLLQKSEM---TPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNL 361

Query: 648 NDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            DL+ +    +A   H   +  + +I      S V D  RL QI + ++SNA+ F+ +G+
Sbjct: 362 RDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGT 421

Query: 707 TVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
            V+     D  +       SV++ G  +     +++F  F    +    Q  G GLGL I
Sbjct: 422 IVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVI 481

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  I   GG + + S+    +     +
Sbjct: 482 SKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|307824966|ref|ZP_07655188.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307734013|gb|EFO04868.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1759

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 122/680 (17%), Positives = 232/680 (34%), Gaps = 74/680 (10%)

Query: 157  GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
            G V G  A  R         ++ E  L  + L      ++ L   +   V        IL
Sbjct: 856  GEVIGVLAIGR---------DITERKLAEQALRESEEKYRTLIQKIQAAVVVHGADTQIL 906

Query: 217  WANISYKKNTE--TEGIVFQKAIGESRKLF---------KEEIKKRMISSSALEKNFCET 265
              N+  ++      + +  + AI      F          E    ++++S    KN+   
Sbjct: 907  TFNLVAQEILGLSEDQLYGKTAIDPVWHFFHENGCAASPDEYPVNKVLASGKALKNYVLG 966

Query: 266  VSTLEHGNNKSYKIVRVLNSFGEAGIA------IDVSKEITVNDQLTHTYEILHNLTVAI 319
            V       +    +        +  I       ID+++      +L      L+ +  A+
Sbjct: 967  VHRPGRQQDVWVLVNADPVFGKDGKITQVIITFIDITQRKQAEQRLWLVDFALNQVREAV 1026

Query: 320  AIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
             I + Q+      N             L     +  + +    A+    +   +      
Sbjct: 1027 YIINLQDHRFLNVNAEASRALGYSTEELL----DLTIYDIDPDADSEGMENLQREIDAGS 1082

Query: 379  FSVYKSSETHKDTWHLP---NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV-- 433
             SV++     KD    P   N Q             +I +  ++T +  +E +   L   
Sbjct: 1083 LSVFERRHKTKDGRIFPVEINAQVFEYEGRPT----SIALVRDITERKRVEDEVRALNAD 1138

Query: 434  ----------------KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
                            +     ID L     +   + R  + N           + +   
Sbjct: 1139 LELRVLERTEALRLQTRYLRTLIDTLPMLAWLKDKESRFLVVNQTMALACTLSVDEMVGK 1198

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL--EYSIIPLPN 535
            + +       +  Y   D   +           RK+++G      D V+  E    P+ +
Sbjct: 1199 SDLDCWPREYAESYRAVDSEVMATG-------RRKTVEGPFFDAHDGVIWVETFKAPVLD 1251

Query: 536  A-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                   T+   ++++D    E A         +   +++ F+  +S+ELR+PL  I+G+
Sbjct: 1252 VDGSVLGTVGIALDISDRRALEMAREAALAEAERLARLRSEFMARMSHELRTPLNGILGY 1311

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
              +L     G  N +QS  +  I  S   LLNL+NDILD A ++AG  +L+ S I L   
Sbjct: 1312 AQILLGESRG--NERQSAMLNVIQQSGEYLLNLINDILDFAKIEAGKQELSLSDIQLPSF 1369

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            L  +   I  K  +  +         + +   AD  RL Q+   +LSNA+ +S +G   +
Sbjct: 1370 LRNLASIITIKAEQKALVFVCDIAADVPAGIRADETRLRQVLLNLLSNAIKYSERGQISL 1429

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
                 + G   F V+++G  I      ++F  F      + +  G GLGL I    + + 
Sbjct: 1430 KVTVLEPGRLRFEVQDSGLGIDTGQLDTIFQAFEQAGDWQHRTGGTGLGLPISRELVRMM 1489

Query: 769  GGHVSISSSDEGVTTINCRI 788
               + ++S  +  +T    +
Sbjct: 1490 DSDIHVTSRVDEGSTFWFDL 1509



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 100/323 (30%), Gaps = 36/323 (11%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TET 228
           L  +            ++    +  +   D++  L++     G     +    +      
Sbjct: 481 LVRLRRSHRRLEALNTQVLQAKNKLQATLDTIPDLLFEIGLDGRYYDYHSPCTELLLVPA 540

Query: 229 EGIVFQK----AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
           E ++ +        E+ K+    +++      +  K F   +    HG+   +++   + 
Sbjct: 541 EDLLGKTVSDVMPAEAAKIVMSALREAHDQGISTGKQFQLPLP---HGD-FWFELSVAIK 596

Query: 285 SFGEAGIA------IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRS 334
              +   A       ++++   +  Q+    +    ++ N    I  +D+     + N +
Sbjct: 597 PTLDKEEAHLIVLSRNITERKHMEAQVLQREQEFRVLVENSPDLIFRYDKECRRIYTNPA 656

Query: 335 FVELWEIDL-AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
              L      A L  +PS  ++L    +   +            + +  + +E+  +   
Sbjct: 657 VARLVGRRADALLNMSPSEAKILSAGEADKLM-------QMIRQVQATGRPAESEVECL- 708

Query: 394 LPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             +GQ  +      P         G I +  ++T +           +      + L + 
Sbjct: 709 GADGQLHYFHNRYAPEFNAHGEVVGVISIARDVTERKQAAEALAASEREFRTLAESLPDN 768

Query: 447 VAVFGPDGRIKLSNPAFRSLWKT 469
           +  +  +GR+   NP       T
Sbjct: 769 IVRYDLEGRVIYVNPVLEKTLGT 791


>gi|299136566|ref|ZP_07029749.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
 gi|298601081|gb|EFI57236.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
          Length = 931

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 12/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                + AE A  E+  A   + + K+ F+ ++S+E+R+PL  IIG TDL   ++   L 
Sbjct: 261 QRYRMIEAEAAGRERVRAAEASSQAKSEFLANMSHEIRTPLNGIIGMTDLALETE---LT 317

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  Y+E +  S   LLN++NDILD + ++AG ++L      L + +    +++A +  
Sbjct: 318 QEQRDYLETVKLSGDALLNVINDILDFSKIEAGKIELEEIDFNLCNCIEGTLKTLALRAD 377

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NG 717
           E  + +       +   V  D  RL QI   ++ NA+ F+SKG  + LK   D       
Sbjct: 378 EKGLELLCDVSPHIAEVVSGDPGRLRQILLNVIGNAIKFTSKGE-ISLKVKSDLIEEKKS 436

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              F + + G  I  +   ++F+ F        R   G GLGL+I    + + GG + + 
Sbjct: 437 ILHFIITDTGIGIAPEKLTTIFDSFNQADTSTTREFGGTGLGLTISRCLVEMMGGKLWVE 496

Query: 776 SSDEGVTTINCRIPSK 791
           S     +  +  IP K
Sbjct: 497 SEVGVGSQFHFTIPMK 512


>gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 804

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 12/251 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                 E  L +  E   KA ++K++F+ ++S+E+R+P+  ++G   LL T+K   LN +
Sbjct: 396 QQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTK---LNDE 452

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +YVE +S S+  LL ++NDILD + ++AG + L      +  +L+E+   +     + 
Sbjct: 453 QKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQK 512

Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDF 719
            I  ++    ++      D  RL QI   +  N + F+S+G  V LK  + N        
Sbjct: 513 EINFRLEGKLEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVV-LKVTQKNISKSSVSI 571

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F+V ++G  IP +  K VF  F  N     R   G GLGLSI +  + L GG + + S 
Sbjct: 572 EFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGGVLKLESK 631

Query: 778 DEGVTTINCRI 788
           D   +     I
Sbjct: 632 DGEGSKFTFTI 642


>gi|298385742|ref|ZP_06995300.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
 gi|298261883|gb|EFI04749.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
          Length = 499

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/514 (21%), Positives = 211/514 (41%), Gaps = 41/514 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLE 357
           +  N Q  +  E+L  L   + IF+ N  +   NR       +  +     P S ++L +
Sbjct: 1   MEENKQTLYNDELLDILPDGVIIFNINGEVIQLNRQAQTELHVHSSANEMMPLSTNDLFK 60

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLH--VIVTSNPRGG--- 411
            L +             KE+I SV  +     + T+ LP    +   V  T  P  G   
Sbjct: 61  LLNN-------------KEDILSVILEKIRQGEQTYSLPEHTFMQEQVDYTQFPIRGDFA 107

Query: 412 ----------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSN 460
                      ++ F N+TV++  E   NT ++       +     + F  D R  +   
Sbjct: 108 TIKEDGNLKKILFFFRNITVELTQEYILNTALQRTRIYPWYYDINRSEFTLDNRYFEHLG 167

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            +                H  +  A    +  +  G + F   +  F   R    GT E 
Sbjct: 168 ISAGENNTLTMEEYVNMIHPDDRQAMADAFIVQLSGMETFDKSV-PFRLHRG--DGTWEW 224

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                   + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S+E+
Sbjct: 225 FEGQSTYIANISGHPYRLVGICMSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEI 284

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++D+LDL+ +++  +K 
Sbjct: 285 RTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKF 344

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            ++   L  L+ ++++  A K   + I I+     +      D  RL Q+    ++NA  
Sbjct: 345 TFTDCSLQSLMMDIEKEQAMK-PISEIEIRASFPNEDVYINTDATRLKQVVCNFINNARK 403

Query: 701 FSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           F+ KG  +    A D          V++ GS IP++  K +F+RF        ++G GLG
Sbjct: 404 FTEKG-YIHFGYAVDPVNADSVNIFVEDTGSGIPQECQKEIFDRFYKVDTF--KQGTGLG 460

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LSI ++ +    G +S+ S     +     +P +
Sbjct: 461 LSICKTIVEHLQGDISVESEMGKGSRFIVTLPFE 494


>gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
 gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
          Length = 980

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 3/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL ++N  L++ D++KN F+ + S+ELR+PL  IIG  D L     G L       +  
Sbjct: 440 KALEDQNAELQRLDKLKNEFLANTSHELRTPLNGIIGIADSLLDGATGPLPEPTRTNLVM 499

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLVN+ILD + +    + L   ++ + +++  V       + + ++     
Sbjct: 500 IVVSGRRLANLVNNILDFSKLRHKSIDLQLKSVGMREIVEVVFTLSKPLIGKKDLTFINN 559

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L    AD  RL QI   ++SNA+ F+  G  + + A       + SVK+ G  I E
Sbjct: 560 ISVDLPPVYADENRLQQILHNLVSNAIKFTDSG-RIEISAEIKENLLVTSVKDTGIGISE 618

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D  + +F  F        R   G GLGL++ +  + LHGG + ++S     +     +P 
Sbjct: 619 DKFERIFESFEQADGSTARVYGGTGLGLAVTKKLVELHGGTIHVASKVVVGSRFTFTLPI 678

Query: 791 KE 792
            E
Sbjct: 679 AE 680


>gi|32477267|ref|NP_870261.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1]
 gi|32447818|emb|CAD77336.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1]
          Length = 1182

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 98/581 (16%), Positives = 215/581 (37%), Gaps = 74/581 (12%)

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           ++ R+ +    ++     V        +S +I RV        +  +V++      +L  
Sbjct: 147 LQGRLRTRLKHQRTLQHRVH------RRSLQIRRVNR-----ALRNEVTRRQETQHRLDQ 195

Query: 308 TYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +     +L       +A         + N  F     +    +  +   +   + + +  
Sbjct: 196 SETTFQSLIDRMHLQVARKSAEGVFTYANEQFCADIGMTPVDVIGSTDAELFGDSIGAK- 254

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMF 416
                  ++    ++ S  ++ +   +    P+G+     V   P         G   +F
Sbjct: 255 -------YRADDLSVMSTGQAVDKV-EVHPGPDGRIGFAQVFKAPEYDQNGQCVGVQIIF 306

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T +   E         +    D   + V +      I  +NP+   L +    RL  
Sbjct: 307 WDITEKHRNEIALRDSEARKRALFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLV- 365

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G  + ++ +  S  +      +     +   D              +S +    IP+ +A
Sbjct: 366 GRPLNDLISPVSNQWGGLPLAERHQLRLRRGDGS----------SFESEVSIHHIPVGDA 415

Query: 537 QTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                 +      RA   A+ E   A  +A+  K  F+  +S+ELR+PL  I G TDLL 
Sbjct: 416 TGQAVIIRDVTLQRAAFEAMREAKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLG 475

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +L +   +YV  I+ ++ +L +++ DILD A ++AG + ++   + L++++ +  
Sbjct: 476 QQ---TLPTAARRYVNLIAQNTELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAF 532

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST------- 707
             +A ++ +  +R+ + I+       +AD +R+ QI   +  NA+ F+++G         
Sbjct: 533 GCLAVRVADKPVRLCLSIAPDTPRRVIADPKRIRQIVINLAGNAIKFTNRGEVSLRLGPI 592

Query: 708 ---------------VILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
                          +    + D+     F  +V + G  I  +    +F+ F       
Sbjct: 593 GDAPPSHGNDANSPEITTNGSTDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRGT 652

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +   G GLGL+I        GG ++++S  +  +   C +
Sbjct: 653 NKQFGGTGLGLAIARGLAQRMGGDITVTSQVDLGSQFQCAL 693



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 90/288 (31%), Gaps = 41/288 (14%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+        +L    + F+ L D +   V  +   G   +AN  +       G+ 
Sbjct: 178 ALRNEVTRRQETQHRLDQSETTFQSLIDRMHLQVARKSAEGVFTYANEQF---CADIGMT 234

Query: 233 FQKAIGE-SRKLFKEEIKKR--------MISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
               IG    +LF + I  +        M +  A++K           G  + +K     
Sbjct: 235 PVDVIGSTDAELFGDSIGAKYRADDLSVMSTGQAVDKVEVHPGPDGRIGFAQVFKAPEYD 294

Query: 284 NSFGEAGIAI---DVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            +    G+ I   D+++    EI + D       +      A+ + D  R +   N S  
Sbjct: 295 QNGQCVGVQIIFWDITEKHRNEIALRDSEARKRALFDAAGDAVLLIDDQRAIVEANPSAS 354

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           EL +     L   P ND +         LP                  +E H+      +
Sbjct: 355 ELLQAGGGRLVGRPLNDLISPVSNQWGGLP-----------------LAERHQLRLRRGD 397

Query: 397 GQTLHVIVTSN--PRG---GTIWMFENLTVQVDLETKYNTLVKVQGET 439
           G +    V+ +  P G   G   +  ++T+Q               + 
Sbjct: 398 GSSFESEVSIHHIPVGDATGQAVIIRDVTLQRAAFEAMREAKAAAEQA 445


>gi|330843130|ref|XP_003293515.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum]
 gi|325076143|gb|EGC29955.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum]
          Length = 1374

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 172/380 (45%), Gaps = 29/380 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +    +     +     I++  + V ++   G I+  N AF                   
Sbjct: 504 LKKAEQLKDATRKMVTCIENSPDCVEIWDHSGHIQYLNLAFTETTGFARWEF-------- 555

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDSVL--EYSIIPLPNAQT 538
                  + +  +  ++  ++ T+  D +K+  G ++   L+++V+  + SI P+ +   
Sbjct: 556 ---LGKEFSSLIENTEIIPSMWTTLTD-KKTWNGFIKTRHLNNTVIYFDTSISPVLDQFQ 611

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI-KNSF-VQHVSYELRSPLTNIIGFTDLLKT 596
            + + + T     ++ + E+++ L +   I K+   +  +S+++R+P++NIIG  DLL  
Sbjct: 612 QILYYHCTKRDVTQKKIDEESKTLEQNKIIEKSRLRISMMSHDIRTPMSNIIGMADLLYD 671

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L++ Q  Y+  I  SS  LLN++NDILD++ ++AG +++ Y     N  ++EV +
Sbjct: 672 T---PLSNHQLHYLNIIKNSSNTLLNIINDILDMSKIEAGKLEIEYERFDFNSTVSEVVE 728

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           S+A ++    + +    D K+  + V    RL QI + +L N++ F+ KG   I     D
Sbjct: 729 SMAQRVQAKGLELLSYIDPKIPQTLVGPSSRLNQILTNLLGNSLKFTDKGEISIFCLLTD 788

Query: 716 NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL-H 768
             D        VK+ G  I ++    +F  F         Q  G GLGL+I +  + L  
Sbjct: 789 ETDSEYVIRVEVKDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVQLAF 848

Query: 769 GGHVSISSSDEGVTTINCRI 788
            G +S+ S     +T    +
Sbjct: 849 NGSISVESHYGHGSTFTAIL 868


>gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 800

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 167/366 (45%), Gaps = 30/366 (8%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFA 501
           SEG+A   P G ++  NPAF      +      GT ++++       RY +E      F 
Sbjct: 155 SEGLAAISPQGILEFLNPAFAQAHSHDSVAELVGTPLKSLFNPDELRRYESEILPSMEFT 214

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--------- 552
               ++     +   ++EL  D  L +S      AQ+    ++  + V+ E         
Sbjct: 215 G---NWSGPFANRDISIELRPDGGLLFSS---KEAQSAPQALDTYEEVKQETEQLYQQLD 268

Query: 553 RALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+ + N+A  +A   ++ K+SF+  +S+E+R+P+  +IG T +L  ++   ++  Q  Y
Sbjct: 269 QAIAKANQAALEAELANQAKSSFLASMSHEIRTPMNAVIGLTGVLLETQ---IDDDQRDY 325

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I AS   LL L+NDILD + +++  M+L    I     + E  + +A K     + +
Sbjct: 326 LQTIRASGDSLLVLINDILDFSKIESDKMELEERPIDPRCCVEEALELLAEKASSKGLEL 385

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVK 724
              +   +    + D  RL QI   ++ NA+ F+ KG   V+LK    +       F+VK
Sbjct: 386 CYEASEDIPFGILGDATRLRQILVNLIGNAIKFTEKGQIEVLLKTRETDQRNCVIEFTVK 445

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  IP D    +F  F        R   G GLGL+I +    L GG + + SS+   +
Sbjct: 446 DSGIGIPADKQSRLFKSFSQVDSSTTRKYGGTGLGLAISKKLTELMGGEMRVESSEGSGS 505

Query: 783 TINCRI 788
           +    I
Sbjct: 506 SFIFTI 511


>gi|217978045|ref|YP_002362192.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503421|gb|ACK50830.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 792

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 3/248 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             + R  R   E    L  A E K+ F  ++S+ELR+PL  I+G+ +LL+    G L  +
Sbjct: 538 MRNARLFRKAEENGRQLAVASEHKSRFFANMSHELRTPLNAILGYAELLRDGLYGELPDR 597

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +E + ++   LL L+ND+LDL+ ++AG + L      + +++ +   +  +     
Sbjct: 598 AKSVLERVESNGAHLLGLINDVLDLSKLEAGELSLVLDEYSMRNIVEQAIGATYSLAQAK 657

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +RI    +  +     D +RL Q+   ILSNA+ F+ +G  V +KA      F   V +
Sbjct: 658 GLRIDQTIEEPMPLGRGDERRLTQVLINILSNAIKFTDEG-YVAIKAQTLADMFEIVVTD 716

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +    +F  F    +   R   G GLGLSI   F+ +HGG +S++S     ++
Sbjct: 717 TGPGIPPEDQARIFEAFQQGDNTSTRLKGGTGLGLSISRRFVEMHGGAISVASKLGEGSS 776

Query: 784 INCRIPSK 791
               +P +
Sbjct: 777 FTILVPIR 784


>gi|88858789|ref|ZP_01133430.1| putative sensor protein [Pseudoalteromonas tunicata D2]
 gi|88819015|gb|EAR28829.1| putative sensor protein [Pseudoalteromonas tunicata D2]
          Length = 1027

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 157/384 (40%), Gaps = 38/384 (9%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                +   S+ +      G I   N +    +   EN+      +R I+     +   +
Sbjct: 366 RYEAIVAGSSDAIINVDKSGTILSWNDSAAYFFDLRENQAQ----VRKISNIVFSHETNA 421

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--------------------- 533
              D+  ++I     +   ++G        +L  S+ P+                     
Sbjct: 422 LDTDVLTSVIEQKKPQVFEVEGISNAGEKRILSISLSPVISQSTVIAPSVAALIRDITAS 481

Query: 534 -PNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             N   + +     +   AER   L    E    A++ K++FV ++S+E+R+PL  I G 
Sbjct: 482 RMNEIKIQSMNQSLELQVAERTQELKHATELAIAANQSKSAFVANISHEIRTPLNGIAGM 541

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +LL+      L+ KQ  Y++   +S + L  L+ND+LDL+ +++G + +      L + 
Sbjct: 542 MELLQRE---DLSDKQLNYLKMAKSSVSTLTVLINDLLDLSKIESGKLDIELVQFNLIET 598

Query: 651 LNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++ V  S+A +  E  + +    +  +    ++D  R+ Q+   ++ NA+ F+++G  V+
Sbjct: 599 MSSVINSMALRCDEKGLELLFDWTQIQHEELISDAYRIKQVLVNLIGNAIKFTAQGQIVV 658

Query: 710 L----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
                 AA++       + + G  +  +    +F  F        +   G GLGLSI + 
Sbjct: 659 SAKTYAAAQEQIWLEVVITDTGIGLTPEQQAKLFRPFTQAHANIAKNFGGTGLGLSISQQ 718

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            + L GG ++I S  E  +T    
Sbjct: 719 LVQLLGGEITIHSVVEQGSTFTFT 742


>gi|315187538|gb|EFU21294.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 900

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 124/253 (49%), Gaps = 11/253 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R  R L E N  L KA+  K+ F+ +VS+E+R+PL  I+GF + LK    G  + ++
Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALK----GEQDPRE 438

Query: 607 SQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            + +++ + + +  L  L+++ILD+  ++ G + L+ S   L++++  V + +       
Sbjct: 439 REGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYVCRVMEENARRK 498

Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIF 721
            +       DG     V D  RL Q+   ++ NA+ F+ +G   +     + G+      
Sbjct: 499 GLSFSFEIEDGVPVWVVGDPFRLQQVLMNLVGNAVKFTEEGGVRVRVGCVEEGEGRWIEV 558

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  IPE+M + VF  FV       RR  G GLG++I    + L GG + + S   
Sbjct: 559 EVRDTGIGIPEEMREKVFESFVQGDTSTTRRYGGSGLGMTIARELVRLMGGDIGLESEVG 618

Query: 780 GVTTINCRIPSKE 792
             T +  RIP  E
Sbjct: 619 KGTRVWFRIPCVE 631


>gi|183219905|ref|YP_001837901.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778327|gb|ABZ96625.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 596

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 7/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ++ L E  E    A   K+ F+  +S+E+R+PL  +IG T +L  +    L+++Q  Y+
Sbjct: 275 TQKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQILFET---DLDAEQKSYL 331

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+ +   LLN++NDILD + +DAG + +  +   L +L+ E+    A + +   +  K
Sbjct: 332 KTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEANTKQLEFK 391

Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +  +    V+D  R+ QI   ++ NA+ F+  G  VIL   ++    +F +K++G  
Sbjct: 392 FEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTETG-FVILSIKKEEHSILFQIKDSGIG 450

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +   S+F +F        R   G GLGL+I E  + L  G + + S     +T  C 
Sbjct: 451 ISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKGVGSTFWCS 510

Query: 788 IPS 790
            P 
Sbjct: 511 FPL 513


>gi|146297551|ref|YP_001181322.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411127|gb|ABP68131.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 142/367 (38%), Gaps = 44/367 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           ++     +     + ++S+GV        I   N +                    +   
Sbjct: 239 SELEFEKQKLERILQNMSDGVVAINSKNEIIHINESANKFLNG------------RVEEF 286

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            ++   ES                    + T+    D  LE S     ++      + + 
Sbjct: 287 INKMGKESGSDT----------------EVTIYTTDDLTLEVSKATFIDSYMNRGLIFII 330

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  +  L          D ++  FV +VS+ELR+P+T I  +++ L           +
Sbjct: 331 HDITQQAKL----------DSMRKQFVANVSHELRTPITTIKTYSETLLD---VDNEETK 377

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q++  I      +  LV+D+L L+ +D+G   LN   + L++L+  V + +     + N
Sbjct: 378 KQFLSVIIKECDRMTRLVSDLLYLSRLDSGENILNLEEVNLSELVRFVCEKLKIHAKKKN 437

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +       + + V DR ++ Q+   ++SNA+ +  +G  + +   ++       VK+N
Sbjct: 438 QTLSCSILQDIVAMV-DRDKIEQVLINLISNAVTYVQEGGQINVVLQKEEDKIKIIVKDN 496

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE+    +F RF        R   G GLGLSI +  +  HGG + + S     TT 
Sbjct: 497 GPGIPEEDLPRIFERFYRVDKARSRELGGSGLGLSIADEIVKAHGGKILVESKVGSGTTF 556

Query: 785 NCRIPSK 791
              +P+K
Sbjct: 557 TVVLPAK 563


>gi|42523313|ref|NP_968693.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575519|emb|CAE79686.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 720

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 96/516 (18%), Positives = 206/516 (39%), Gaps = 42/516 (8%)

Query: 305 LTHTYEILHNLTVAI-AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND---ELLEFLR 360
           L ++  I+ +  V +   +   R   F+N +++ + +        +P ++   E+ + + 
Sbjct: 69  LINSLRIVFSCPVGMYCTWGPQRR-VFYNDAYIPILKHRHPHALGSPLHEVWPEVWDQVH 127

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           +     E   +    +  F +    +   + +   N    +     +   G +    + T
Sbjct: 128 AIASKVESGGFVLESDVQFDIEVDGKPQGNYYTYGNSPLFNAEGKVS---GMLCTILDTT 184

Query: 421 VQV-----------DLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWK 468
             V               +     +     ++     +AV   P+ R  ++N ++R L  
Sbjct: 185 TSVKRNQAAEESLARSNQEVRAERRKLRSILEKAPIAMAVLDGPEHRFSMTNDSYRDL-- 242

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFA--AIITSFDDERKSLQGTLELLSDSVL 526
              +    G  ++++     +    +   +++    +  + + E    +      S  V 
Sbjct: 243 FLGDCDVTGRRVKDVFPKTEKIGLIALLDEVYRTGKVFEAKNYEIHDRRADGVEFSVFV- 301

Query: 527 EYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +    P+ +        +L   NVT+ V AERAL     A   A++ K++F+ ++S+E+R
Sbjct: 302 DVVYQPIYDFNDEIEGLVLAANNVTEQVMAERALQAAKSAAENANQAKSAFLANMSHEIR 361

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GF +++ T  L    S++  Y E I  +   L  +++DILDL+ ++AG  ++ 
Sbjct: 362 TPLGVILGFAEIIGTQDLD--ESERKNYFEIIHRNGLSLTRIIDDILDLSKIEAGKFEIE 419

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMD 700
            S + L  LL EV      +    NI +     +      ++D  R+ Q+   ++ NA+ 
Sbjct: 420 KSPVKLKKLLQEVLTMFFDQASRKNIYLNYELGEIAPLIILSDVVRIRQVLVNLIGNAIK 479

Query: 701 FSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
           F+ KGS V +    +         +FS+++ G  + ++  + +F  F        R   G
Sbjct: 480 FTMKGS-VKVSCRAEQVTATRKKIVFSIEDTGIGMTQEQAERLFQPFTQADATSTRQFGG 538

Query: 754 VGLGLSIVESFINLHGGHVS-ISSSDEGVTTINCRI 788
            GLGL++  +     GG VS +        T     
Sbjct: 539 TGLGLALSRNLARALGGDVSIVRCEPRQGCTFEFSF 574



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 51/167 (30%), Gaps = 26/167 (15%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSN----- 352
             V  +      IL    +A+A+ D         N S+ +L+  D         +     
Sbjct: 202 QEVRAERRKLRSILEKAPIAMAVLDGPEHRFSMTNDSYRDLFLGDCDVTGRRVKDVFPKT 261

Query: 353 -----DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                  LL+ +    K+ E  N++        V  S     D  + P      +   ++
Sbjct: 262 EKIGLIALLDEVYRTGKVFEAKNYEIHDRRADGVEFSVFV--DVVYQP------IYDFND 313

Query: 408 PRGGTIWMFENLTVQVDLETKYNT-------LVKVQGETIDHLSEGV 447
              G +    N+T QV  E              + +   + ++S  +
Sbjct: 314 EIEGLVLAANNVTEQVMAERALQAAKSAAENANQAKSAFLANMSHEI 360


>gi|182625259|ref|ZP_02953034.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|177909571|gb|EDT72011.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 791

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 96/506 (18%), Positives = 206/506 (40%), Gaps = 41/506 (8%)

Query: 301 VNDQLTHTYEILH-NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           + ++L   Y ++  N + +I ++D  + + + N++  E +            + +L + L
Sbjct: 276 LQNELQVFYHLVEFNTSSSIILYDNKKKVIYTNKTIRERY----------CKSTKLKDQL 325

Query: 360 RSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWM 415
           +   KL     +    ++N      +    +    L NG+ +   +       +      
Sbjct: 326 KEVEKLFVDSIFIDDSEKNATKALFNKGNWEGKLILKNGKIVSAYIQILNVENKNYFAVN 385

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRL 474
            +++T +  L        ++     +++ + +     +G I   N +  ++L  T E  +
Sbjct: 386 LKDITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEII 445

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G  I N+        N+              +DE  S++  L      V   SII   
Sbjct: 446 --GMPIINLLGKNDEILNQLK-----------LEDEEDSIKCKLVGKHSFVYVESIIRTL 492

Query: 535 NA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           N         ++   N+T   R E  L  K +  +  ++I+N F  ++S+ELR+PL  I 
Sbjct: 493 NDNNEIPYGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIY 551

Query: 589 GFTDLL---KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
               LL     +     N+   +Y + +  +   +L L+N+++D++ ++ G +K +++  
Sbjct: 552 STIQLLNSKHETDPMDFNNFYDKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTNR 611

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+  +   +       +I I   ++ +      D  ++ ++   +LSNA+ F+   
Sbjct: 612 DIVFLVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNH 671

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
             + +           S+K+NG  IP++M  S+F+RFV        +  G G+GLSIV+S
Sbjct: 672 GEIFVDLNISKDWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKS 731

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              LH G + + S     +     +P
Sbjct: 732 IAELHDGKIELISDGIKGSEFIVWLP 757


>gi|110799765|ref|YP_694661.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|168210597|ref|ZP_02636222.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|168217589|ref|ZP_02643214.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|110674412|gb|ABG83399.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|170711346|gb|EDT23528.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|182380362|gb|EDT77841.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 791

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 96/506 (18%), Positives = 206/506 (40%), Gaps = 41/506 (8%)

Query: 301 VNDQLTHTYEILH-NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           + ++L   Y ++  N + +I ++D  + + + N++  E +            + +L + L
Sbjct: 276 LQNELQVFYHLVEFNTSSSIILYDNKKKVIYTNKTIRERY----------CKSTKLKDQL 325

Query: 360 RSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWM 415
           +   KL     +    ++N      +    +    L NG+ +   +       +      
Sbjct: 326 KEVEKLFVDSIFIDDSEKNATKALFNKGNWEGKLILKNGKIVSAYIQILNVENKNYFAVN 385

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRL 474
            +++T +  L        ++     +++ + +     +G I   N +  ++L  T E  +
Sbjct: 386 LKDITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEII 445

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G  I N+        N+              +DE  S++  L      V   SII   
Sbjct: 446 --GMPIINLLGKNDEILNQLK-----------LEDEEDSIKCKLVGKHSFVYVESIIRTL 492

Query: 535 NA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           N         ++   N+T   R E  L  K +  +  ++I+N F  ++S+ELR+PL  I 
Sbjct: 493 NDNNEIPYGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIY 551

Query: 589 GFTDLL---KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
               LL     +     N+   +Y + +  +   +L L+N+++D++ ++ G +K +++  
Sbjct: 552 STIQLLNSKHETDPMDFNNFYDKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTNR 611

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+  +   +       +I I   ++ +      D  ++ ++   +LSNA+ F+   
Sbjct: 612 DIVFLVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNH 671

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
             + +           S+K+NG  IP++M  S+F+RFV        +  G G+GLSIV+S
Sbjct: 672 GEIFVDLNISKDWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKS 731

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              LH G + + S     +     +P
Sbjct: 732 IAELHDGKIELISDGIKGSEFIVWLP 757


>gi|18309189|ref|NP_561123.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|18143864|dbj|BAB79913.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 791

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 96/506 (18%), Positives = 206/506 (40%), Gaps = 41/506 (8%)

Query: 301 VNDQLTHTYEILH-NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           + ++L   Y ++  N + +I ++D  + + + N++  E +            + +L + L
Sbjct: 276 LQNELQVFYHLVEFNTSSSIILYDNKKKVIYTNKTIRERY----------CKSTKLKDQL 325

Query: 360 RSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWM 415
           +   KL     +    ++N      +    +    L NG+ +   +       +      
Sbjct: 326 KEVEKLFVDSIFIDDSEKNATKALFNKGNWEGKLILKNGKIVSAYIQILNVENKNYFAVN 385

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRL 474
            +++T +  L        ++     +++ + +     +G I   N +  ++L  T E  +
Sbjct: 386 LKDITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEII 445

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G  I N+        N+              +DE  S++  L      V   SII   
Sbjct: 446 --GMPIINLLGKNDEILNQLK-----------LEDEEDSIKCKLVGKHSFVYVESIIRTL 492

Query: 535 NA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           N         ++   N+T   R E  L  K +  +  ++I+N F  ++S+ELR+PL  I 
Sbjct: 493 NDNNEIPYGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIY 551

Query: 589 GFTDLL---KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
               LL     +     N+   +Y + +  +   +L L+N+++D++ ++ G +K +++  
Sbjct: 552 STIQLLNSKHETDPMDFNNFYDKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTNR 611

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+  +   +       +I I   ++ +      D  ++ ++   +LSNA+ F+   
Sbjct: 612 DIVFLVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNH 671

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
             + +           S+K+NG  IP++M  S+F+RFV        +  G G+GLSIV+S
Sbjct: 672 GEIFVDLNISKDWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKS 731

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              LH G + + S     +     +P
Sbjct: 732 IAELHDGKIELISDGIKGSEFIVWLP 757


>gi|327541868|gb|EGF28379.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 601

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 152/326 (46%), Gaps = 26/326 (7%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L P  H+R+++   +         D       S DDE + L      +        +  L
Sbjct: 271 LQPLLHLRDVSDAIT-------HGDTNQRANISTDDEFRELADAFNRM--------LRHL 315

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              QT L  VN     R ++   + N  L +A+ +K  F+ ++S+ELR+PL +IIGF+++
Sbjct: 316 TETQTQLQSVNRELDARVDQ-FAQLNLQLYEANRLKTDFLANMSHELRTPLNSIIGFSEV 374

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+   + SL+ KQ +Y   I  S  +LL ++NDILDLA V+AG M++  S   L+ L+  
Sbjct: 375 LQ--GIDSLSEKQRRYASNIQKSGRLLLEMINDILDLAKVEAGKMEVRRSEFQLSRLVGA 432

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               I +   + NI + V     L     D  +L QI + +LSNA+ F+ +G  + ++  
Sbjct: 433 QCDMIQSLSEDKNISLSVEVPDDLPVAYQDPNKLGQILNNLLSNAIKFTPEGGMITVRVV 492

Query: 714 R-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-------RGQRRGVGLGLSIVESFI 765
              +  F  SV + G  + ++    +F +F  +           +  G GLGLSIV+   
Sbjct: 493 DLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGLTREFAGTGLGLSIVKELA 552

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L GG +   S     +T    +P +
Sbjct: 553 VLLGGEIDFQSELGRGSTFWVILPYR 578


>gi|283770756|ref|ZP_06343648.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus H19]
 gi|283460903|gb|EFC07993.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus H19]
          Length = 554

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDPQS-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 EAHQGNIEVNSQVGEGSTFKVIL 549



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNT 431
            ++T    LE     
Sbjct: 319 HDITNLKQLENLRRE 333


>gi|24216361|ref|NP_713842.1| two-component hybrid sensor and regulator [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45656450|ref|YP_000536.1| histidine kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24197641|gb|AAN50860.1|AE011521_6 two-component hybrid sensor and regulator [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45599685|gb|AAS69173.1| histidine kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 696

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 95/410 (23%), Positives = 170/410 (41%), Gaps = 29/410 (7%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           + L +I   +PR   I+  +N       E   N++       +  + + +          
Sbjct: 148 EFLKLITELSPRIYEIFSIKN------KEILLNSVHSRLDSILKTIPQAIIFMDSGTGKT 201

Query: 458 LSNPAFRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
             N +   L    E   +S      ++        N+ + +      +++ + E+ S Q 
Sbjct: 202 WINESAAKLLSLSEGGEVSSWKVSTSMTELIQSAVNQKEIFLEMNRNLSNMNLEKFSTQW 261

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTD----SVRAE------RALTEKNEALRKAD 566
                   V E + + LP            D      + E      +AL EK+E  ++ +
Sbjct: 262 MFTDPEKKVFEVTSLLLPGKTAPGRLWFFEDITSFHSQQETLALLNQALKEKSEIAQQEN 321

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K  F+ ++S+E+R+P+T I+G T+LL  +    LN  Q   +E I  S   LL +VN 
Sbjct: 322 QAKTVFISNISHEIRTPMTGILGITELLLNT---PLNPDQKDSLELIQRSGDKLLKIVNH 378

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           +LD +  D G ++L      + +LLN++   + T++ +N   + ++        +  D  
Sbjct: 379 LLDFSKADTGKIELESIPFNMQELLNDLVSLLRTEILKNKNELNILFPPNFPKLLKGDPV 438

Query: 686 RLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFIFS--VKNNGSSIPEDMCKSVFN 740
           R+ QI + ++SNA  F+ +G TV +      + N +  F   V + G  IP     SVF 
Sbjct: 439 RIGQILTNLVSNATKFTKEG-TVEVGFHILEKTNSELSFRTWVFDTGIGIPPTKFNSVFE 497

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            FV +     R   G GLGLSI +  I L GG + + S     T     +
Sbjct: 498 PFVQSDKSITRHFGGTGLGLSITKKLIELMGGKIHVESQPGIGTRFWFEL 547


>gi|315195596|gb|EFU25983.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 554

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         TI+++   + +   +G+I ++N A+   +    N    
Sbjct: 197 DLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQV 256

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
           G H                  ++   I+ SF  E+   + L+  +  +     + S +P+
Sbjct: 257 GYH-------------GYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPI 303

Query: 534 PNAQTMLTFVNVTDSVRAERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                           R++++L            L++ + ++  FV +VS+EL++P+T+I
Sbjct: 304 --------------LTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSI 349

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GF + L         S    ++  I   S  + +LV D+LDL+ ++    +L+   + L
Sbjct: 350 KGFAETLIDGAKNDAES-LDMFLNIILKESNRIESLVTDLLDLSHIEQHT-ELDTDYMNL 407

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +DL   +  ++ T+ ++ NI I    +  +    A   ++ Q+ + +L+NA+++S +   
Sbjct: 408 SDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKIAQVITNLLTNAINYSYEDGD 466

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + ++  RD+   IF V++ G  I  +  + +F RF            G GLGLSI +  +
Sbjct: 467 INVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIV 526

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
             H G++ ++S     +T    +
Sbjct: 527 KAHQGNIEVNSQVGKGSTFKVIL 549



 Score = 41.1 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       + N+  AI + D+N  +   N+++ E + I         + +++    
Sbjct: 208 EQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNIS-------HNIEQVGYHG 260

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTS-NPRGGTIWMF 416
               ++ EQL  +++K     +Y+  E   +  H    +   + ++  S     G + + 
Sbjct: 261 YVNTEI-EQLILESFKVEKP-IYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVM 318

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T    LE      V      +      +  F  +  I  +     SL       L  
Sbjct: 319 HDITNLKQLENLRREFVANVSHELKTPITSIKGF-AETLIDGAKNDAESLDMFLNIILKE 377

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              I ++        +     +L    +   D  R+ +   +   +   +   
Sbjct: 378 SNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIH 430


>gi|168214052|ref|ZP_02639677.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170714403|gb|EDT26585.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 791

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 96/506 (18%), Positives = 206/506 (40%), Gaps = 41/506 (8%)

Query: 301 VNDQLTHTYEILH-NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           + ++L   Y ++  N + +I ++D  + + + N++  E +            + +L + L
Sbjct: 276 LQNELQVFYHLVEFNTSSSIILYDNKKKVIYTNKTIRERY----------CKSTKLKDQL 325

Query: 360 RSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWM 415
           +   KL     +    ++N      +    +    L NG+ +   +       +      
Sbjct: 326 KEVEKLFLDSIFIDDSEKNATKALFNKGNWEGKLILKNGKIVSAYIQILNVENKNYFAVN 385

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRL 474
            +++T +  L        ++     +++ + +     +G I   N +  ++L  T E  +
Sbjct: 386 LKDITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEII 445

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G  I N+        N+              +DE  S++  L      V   SII   
Sbjct: 446 --GMPIINLLGKNDEILNQLK-----------LEDEEDSIKCKLVGKHSFVYVESIIRTL 492

Query: 535 NA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           N         ++   N+T   R E  L  K +  +  ++I+N F  ++S+ELR+PL  I 
Sbjct: 493 NDNNEIPYGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIY 551

Query: 589 GFTDLL---KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
               LL     +     N+   +Y + +  +   +L L+N+++D++ ++ G +K +++  
Sbjct: 552 STIQLLNSKHETDPMDFNNFYDKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTNR 611

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+  +   +       +I I   ++ +      D  ++ ++   +LSNA+ F+   
Sbjct: 612 DIVFLVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNH 671

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
             + +           S+K+NG  IP++M  S+F+RFV        +  G G+GLSIV+S
Sbjct: 672 GEIFVDLNISKDWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKS 731

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              LH G + + S     +     +P
Sbjct: 732 IAELHDGKIELISDGIKGSEFIVWLP 757


>gi|149277586|ref|ZP_01883727.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149231819|gb|EDM37197.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 763

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/620 (17%), Positives = 223/620 (35%), Gaps = 42/620 (6%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-------KLFKEEIK 249
            + + L  ++      G  ++   + ++  +   I  ++ I              +  + 
Sbjct: 10  SVLEELPSVILQLSNNGREIYCTYANRQLEQELEIKPEQLISSFSSFLSLLNPAHQSSLT 69

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVR---VLNSFGEAGIAIDVSKEITVNDQLT 306
             +  + A   N+         GN   + I       +  G+  I    +   T      
Sbjct: 70  SSLHHALATGTNWNWEGCFHLSGNKNKWLIAAGKPFKDQSGQIFINSVFTDITTCKHNEE 129

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
              E        +   D     +  +    +++ +D ++   +P+   L E+ R  + L 
Sbjct: 130 IYKETSKLTKTGVWELDLQTNKRSWSEEMYKIYGMDTSW---DPNERSLNEYYRPDSYLA 186

Query: 367 EQLNWKTWKEN----IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
                +    +       +   +      W    G+ +          G +   +++T  
Sbjct: 187 ISAAVENATTHGTPWDLELQAINAAGHSVWIRAIGKAMFKNNIPYKLYGVV---QDITDL 243

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            + +       ++  ET      G        GR   S  AFR      ++         
Sbjct: 244 KNDKNTMKRHEEMLDETQRLTHSGSWESDLLTGRNYWSTEAFRIFGLEPKDEGINTLTFG 303

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA----- 536
            +     R    +   +    +I S       L+  L       +     P+ +      
Sbjct: 304 RMLHHEDR----ALYQEQIQKVIRSGKASNFDLRILLPQQQIRYINAIAKPVKDENGAVI 359

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +     +++T    AE+ L        +A   K+ F+  +S+E+R+P+  +IGFT+LL  
Sbjct: 360 RLYGAIIDITRRKIAEQELINAKVVAEQAANAKSEFLSTMSHEIRTPMNAVIGFTNLLLQ 419

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +       +Q +Y+  +  S   LL L+NDILD + +  G +        L +LL ++++
Sbjct: 420 NNPAQ---EQLEYLNLLKFSGENLLVLINDILDFSKIQEGKISFEMIGFNLPELLEKIRK 476

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +      +  + + +  D  +  S V D  RL QI   +++N++ F+S GS V +   ++
Sbjct: 477 TFMQAARDKGLELTLTVDQSIINSIVGDPVRLGQILINLITNSIKFTSSGS-VSIDVWKE 535

Query: 716 NGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLH 768
           + D       F + + G  I ED    +F+RF         +  G GLGLSI +  I L 
Sbjct: 536 HEDLEHITICFEIADTGIGIAEDRIADIFDRFTQASSDTNRKYGGTGLGLSITKQLIELQ 595

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG +S++S     +T   R+
Sbjct: 596 GGSLSVTSKLNEGSTFQFRL 615


>gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1211

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 128/265 (48%), Gaps = 9/265 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q         +  RA ++L EK E L  + + K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 496 QNREVARKNQEVERARKSLEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILARLLAD 555

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + L +L  KQ +Y   I ++ T LL L+NDILDLA +++G M L+   I   DL   ++Q
Sbjct: 556 NSLNNLTDKQVEYSRTIYSAGTDLLELINDILDLAKIESGTMSLDIEQIAFADLETSLEQ 615

Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST---VILK- 711
           +     H   +   +  D KL  +   D +RL Q+   +L+NA  F+ +G     + +  
Sbjct: 616 TFRQVAHNKELSFTIELDSKLPPTIYNDSKRLQQVLKNLLANAFKFTERGGVKLEITMSS 675

Query: 712 --AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
             A  DN    F+V + G  IP +  K +F  F         +  G GLGLSI      L
Sbjct: 676 DAAQIDNPMVAFAVSDTGIGIPAEKQKVIFEAFQQADGTTSRKYGGTGLGLSISRELAQL 735

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
            GG + + S     +T    +P ++
Sbjct: 736 LGGRIELVSKPGQGSTFTLYLPRRQ 760


>gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella
           amazonensis SB2B]
 gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella
           amazonensis SB2B]
          Length = 1287

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 163/386 (42%), Gaps = 26/386 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT--EENRLSPGTHIR 481
           +  ++   +  +Q   +D  S  +     +G I + NP+   L     +E        I 
Sbjct: 376 ERTSQLEKMGVLQRTILDAASYAIIATDTEGIITVFNPSAERLLGFTAKEMVGLQTPAIF 435

Query: 482 NIAATCSRYYNE---------SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           ++     R   +           G+D F A      ++  +     +  +   ++ S+  
Sbjct: 436 HLEEEVVRRATQLSEELGTKIEPGFDAFVAKSRRGKEDTNNWTYVSKSGARITVKLSVTT 495

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           L          +    ++T+ ++ E+ L +  E   +A   K+ F+ ++S+E+R+P+  +
Sbjct: 496 LYGEDKDIMGYLGIAYDLTEQLKREQELADAREQALQASRAKSDFLANMSHEIRTPMNAV 555

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LL+ +    L  +   Y+E    ++  LL L+NDILD + ++AG ++L      L
Sbjct: 556 LG---LLQMTLQTELPPRPRDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSL 612

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL ++   +++++ + +I +       +    + D  RL QI   +L+NA+ F+ KG 
Sbjct: 613 QQLLGDMGSILSSQVQQKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGD 672

Query: 707 TVI-LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
            +  + A   +         ++++G  +  +    +F  F         +  G GLGL+I
Sbjct: 673 IITRIDADLGDDGTCHLHIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAI 732

Query: 761 VESFINLHGGHVSISSSDEGVTTINC 786
               ++L  G + ++SS    +T   
Sbjct: 733 TRELVHLMQGEIRVTSSPGVGSTFTI 758


>gi|21231592|ref|NP_637509.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768286|ref|YP_243048.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113281|gb|AAM41433.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573618|gb|AAY49028.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1146

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 127/821 (15%), Positives = 269/821 (32%), Gaps = 119/821 (14%)

Query: 66  CDQLSKYHSLLTENNCLT--IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH 123
             ++++    L   +     ++ D   + P + G           D  LL    W     
Sbjct: 190 HLRVNRCAFGLAAEDHSVMHVISDYVQDMPSLKGDFPLEAAQGLRDA-LLENRTWFTTDA 248

Query: 124 --YIKLSKATEKLRKEGQSFDLVAET-QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
                     E+ R  G    L     ++   +   G    +        ++ +   +A 
Sbjct: 249 MAPGAPDYVVEQYRHSGLRASLAIPLHKHGQLVAAIGVHQRAPRQWASTDIELVRLVVAR 308

Query: 181 ------TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
                      ++L+      + L D++  +++  D AG   + N  + + T        
Sbjct: 309 CWESMQRAKAQRQLAASEGRLRRLADTVPQIIFIADPAGQPDYFNQRWYEYTGLNPDTEA 368

Query: 235 KAIGESRKL---FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFG-- 287
            A  +        +   +   ++ +       E       G  + +  + + V +  G  
Sbjct: 369 SAAWQQAHSAAGLRMSGQAWALALNGERAYEIECELRRHDGQTRWHLARALPVRDEHGRI 428

Query: 288 --EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE- 340
               G   D+      E  + +       +   +   I + D +    + N  + E    
Sbjct: 429 SEWIGTYTDIHDRRGFEHKLRESEARFRALCETVPAMIWMADVDGNCVYWNPQWYEFTGQ 488

Query: 341 -----IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL- 394
                +D  +      +D      R  +   + L+ +      + + +    ++  W + 
Sbjct: 489 GEEQALDQGWWNAMHPDDA----ARVRHAFEQALDARGAFIAEYRIRRHDGQYR--WCID 542

Query: 395 -------PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET-------- 439
                   +G+ L          G I    +++ +  +E    +   +            
Sbjct: 543 TASPHFGSDGRFL----------GHIGSLTDISDRKRIEDATASDRAILSLITTGAPLTV 592

Query: 440 -IDHLS------------EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +D ++              V V   + +      A       + +       I      
Sbjct: 593 VLDAIALSVEARGETPLYCAVMVLDEEHQTLQF--AAAPHLPRDYSGDFENAPIGPSGPP 650

Query: 487 CSR---------------------YYNESDGWDLFAAIITSFDDERKSLQGTLEL----- 520
           C+R                     +   S    + A  +T       ++ GTL +     
Sbjct: 651 CARSAHSGLQVICEDIANDPRFEDHRALSAAMGIAACCVTPILGSNGAVLGTLNIYYAQP 710

Query: 521 ----LSDSVLEYSIIPLPNAQTMLTFVNVT--DSVRAERALTEKNEALRKADEIKNSFVQ 574
               L +  +  S   L       T V+     S++AE A   + E       +K+ F+ 
Sbjct: 711 HLASLREQAMARSASHLAGIVIERTRVDAKLKASLQAETAARNQAEHA---SRVKDEFLA 767

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+ELR+PL  I+G++ L++        +K  + +  I  S+     +++D+LD++ + 
Sbjct: 768 TLSHELRTPLNAILGWSRLMQADAFEP--AKLGKGLVVIERSARAQTQIIDDLLDMSAIL 825

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSK 693
           +G ++L      +  L     + +        IR+++ +  +    F  D  RL Q+ + 
Sbjct: 826 SGKIRLQPEHFDIAGLARSTVELMQPTAQARQIRLELDAPLQGSLWFFGDAGRLQQVLTN 885

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           ++SNA+ F++    V +    +       V++ G  I  D    VF+RF        RR 
Sbjct: 886 LISNALKFTAPEGDVRVSLEVEEQRLRLCVRDTGIGIAADFLPHVFDRFRQADAGTTRRV 945

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPSK 791
            G+GLGLSI    I+LHGG +  SS  EG   T    +P +
Sbjct: 946 GGLGLGLSISRQLIDLHGGSLGASSDGEGHGATFTVVLPFQ 986



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 86/295 (29%), Gaps = 34/295 (11%)

Query: 48  RNSLAKKVNETYSFLSEICDQLS--KYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
           R  +A+         ++     S  +   L      +  + D     P+   Q       
Sbjct: 303 RLVVARCWESMQRAKAQRQLAASEGRLRRLADTVPQIIFIAD-PAGQPDYFNQRWYEYTG 361

Query: 106 PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI-----EGRVS 160
              DT+  +   W + H           LR  GQ++ L    +    I+      +G+  
Sbjct: 362 LNPDTEASA--AWQQAHSA-------AGLRMSGQAWALALNGERAYEIECELRRHDGQTR 412

Query: 161 GSCAFL--------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
              A          RI    G Y+++ +      KL    + F+ L +++  ++W  D  
Sbjct: 413 WHLARALPVRDEHGRISEWIGTYTDIHDRRGFEHKLRESEARFRALCETVPAMIWMADVD 472

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI---SSSALEKNFCETVSTL 269
           G+ ++ N  + + T             +     +  + R     +  A      E     
Sbjct: 473 GNCVYWNPQWYEFTGQGEEQALDQGWWNAMHPDDAARVRHAFEQALDARGAFIAEYRIRR 532

Query: 270 EHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
             G  +        +        G  G   D+S    + D       IL  +T  
Sbjct: 533 HDGQYRWCIDTASPHFGSDGRFLGHIGSLTDISDRKRIEDATASDRAILSLITTG 587


>gi|309790274|ref|ZP_07684842.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227662|gb|EFO81322.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 908

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 10/245 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +       A   K++F+ ++S+ELR+PL  IIG++++L+     S ++     ++ I 
Sbjct: 519 LEQAKHLAEGASRAKSAFLANMSHELRTPLNAIIGYSEMLQDDLSESDHTALVPDIQKIH 578

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L+NDILD++ ++AG M+L+     L  L+  V  ++      N+ R+ +   
Sbjct: 579 HAGRHLLGLINDILDISKIEAGKMELHPEQFSLVSLVENVINTVDPLAASNHNRLVLECA 638

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNG 727
             LG   AD  +L QI   +LSNA  F+  G  V L+  R        +G  +F + + G
Sbjct: 639 ADLGMMAADLAKLRQILVNLLSNACKFTQHG-QVTLRVQRLRSETDPQSGTVVFEIADTG 697

Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + E+    +F  F         +  G GLGL+I   F  + GG + + S     +T  
Sbjct: 698 IGMSEEQIARIFQPFSQADTSMTRKYGGSGLGLAISHHFCQMMGGTIRVQSELGVGSTFI 757

Query: 786 CRIPS 790
             +P+
Sbjct: 758 VTLPT 762


>gi|224373295|ref|YP_002607667.1| sensor histidine kinase/response regulator [Nautilia profundicola
           AmH]
 gi|223588528|gb|ACM92264.1| sensor histidine kinase/response regulator [Nautilia profundicola
           AmH]
          Length = 1030

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 132/285 (46%), Gaps = 18/285 (6%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA----ERALTEKNEALRKADEI---KNS 571
            + S S L  S+ P+   +  +          A    + A+    E++RKA+E    K+ 
Sbjct: 338 HIKSLSNLLTSLTPITGKEVQIDITTPQGMDEALKIVDEAIKVTQESVRKAEEATKAKSL 397

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PL  I+GF +LL T+    L  +Q  YV  I+ S+  LL +VN+ILD++
Sbjct: 398 FLANMSHEIRTPLNGILGFLELLNTT---DLTEEQLDYVNTIAQSAKNLLQIVNNILDVS 454

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            +++  + L        D      +   T   + NI +       + S +  D  ++ +I
Sbjct: 455 KIESNKVSLELIDFKAVDEFENTIELFGTPAAQKNIELTTQISPNIPSIIKGDILKIKEI 514

Query: 691 FSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + +LSNA+ F+     + +K   +          F V+++G  + E+  + +F  F   
Sbjct: 515 LTNLLSNAIKFTPNNGHIHVKIQLEKIIDNKAKIYFEVRDSGIGMSEEQKEKIFEAFSQA 574

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 +  G GLGL+IV+S+I + GG + + S     T     +
Sbjct: 575 DESVTRKYGGTGLGLTIVKSYIEMMGGKIYLESELNKGTKFYFNL 619


>gi|152964304|ref|YP_001360088.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
 gi|151358821|gb|ABS01824.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
          Length = 492

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 102/493 (20%), Positives = 194/493 (39%), Gaps = 47/493 (9%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFLATNPSNDELLEFLRSANKLPEQ 368
           +L  L + + +      +   N +    + +    AF    P +             P+ 
Sbjct: 22  LLAALPLGVLVVGAQGRVHAQNDAARAAFGLSGPAAFADVFPRSS------------PDA 69

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---GGTIWMFENLTVQVDL 425
             +   + +      + E  +      +G T  V VT +P    G ++ +  +L      
Sbjct: 70  PPFAVRRADE----AAPEPVEVVGRDADGTTFPVEVTVSPGPRPGTSLVLTRDLRGAARA 125

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +      +    ++  ++G      +G++  +N A R L +   + L     +    A
Sbjct: 126 EAELRRQRGLTELLLESTTDGFLGTDREGQVLFANTAVRRLLRQRASDL-----VGRPLA 180

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-----LEYSIIPLPNAQ-TM 539
              R   ++   D   A+    D   +   G   +L D       ++ ++ PL   +  +
Sbjct: 181 QVGRRPADATLPDG-PALSDVLDGSGEGAGGGRAVLWDRYGTPLSVQVAVSPLITGEEVV 239

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            + + V D+   ER            +E+K  F   VS+ELR+PLT I     L+ +  L
Sbjct: 240 GSVLTVRDATEQER-----------VEELKRQFTAVVSHELRTPLTAIKASLRLVTSGVL 288

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L  + ++ +     ++  L  LVNDILD+  +DAG M L    + L DL     + + 
Sbjct: 289 GPLPEEPARLLRIADENADRLAALVNDILDVERLDAGTMPLEPEDVDLADLARAGVEQLE 348

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +      + + V+ +       AD  R+ Q  + ++ NA+ FS  G  V +   R   + 
Sbjct: 349 STAVAAGVEL-VLGEVGPARVHADPHRIAQALTNLVGNAVKFSEAGGRVEVTCRRTAREA 407

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +V++ G  IP D  ++VF+RF     +   ++ G GLGL+I +  +   GG V + S 
Sbjct: 408 RLAVRDEGRGIPHDQLEAVFDRFRQVYASDAQRQSGSGLGLAITKGIVERSGGRVELRSR 467

Query: 778 DEGVTTINCRIPS 790
               +     +P 
Sbjct: 468 PNEGSEFTVVLPL 480



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 64/249 (25%), Gaps = 19/249 (7%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
            + L  +L   V      G +   N + +      G      +             R   
Sbjct: 19  LEGLLAALPLGVLVVGAQGRVHAQNDAARAAFGLSGPAAFADVFPRSSPDAPPFAVRRAD 78

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNS--FGEAGIAID----VSKEITVNDQLTHT 308
            +A E    E V     G     ++             +  D       E  +  Q   T
Sbjct: 79  EAAPEPV--EVVGRDADGTTFPVEVTVSPGPRPGTSLVLTRDLRGAARAEAELRRQRGLT 136

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             +L + T      D+   + F N +   L     + L   P   ++      A      
Sbjct: 137 ELLLESTTDGFLGTDREGQVLFANTAVRRLLRQRASDLVGRP-LAQVGRRPADATL---- 191

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMFENLTVQ 422
            +     + +    + +   +       G  L V V  +P        G++    + T Q
Sbjct: 192 PDGPALSDVLDGSGEGAGGGRAVLWDRYGTPLSVQVAVSPLITGEEVVGSVLTVRDATEQ 251

Query: 423 VDLETKYNT 431
             +E     
Sbjct: 252 ERVEELKRQ 260


>gi|291287330|ref|YP_003504146.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884490|gb|ADD68190.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 993

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 11/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +      +A+  K++F+ ++S+E+R+PL +I+GF+DLL  S    +N+   +Y   
Sbjct: 368 EQLQKLAVDAEEANIAKSAFLANMSHEIRTPLNSIMGFSDLLCAS---DINANDKEYALT 424

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS S+  LL+++NDILD++ +++G ++L      LN +L+ V + I+ +  E +I     
Sbjct: 425 ISQSARSLLSIINDILDISKIESGKVELFKEEFDLNLMLDYVIKMISVRASEKDINFLFY 484

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNN 726
            D  + +  + D +R+ Q+   +L NA+ F+ KG  + L       A D  D  F V + 
Sbjct: 485 CDTNIPAKLIGDSERIQQVLMNLLGNAVKFTEKGGEIRLSVFMADKADDTVDVRFEVHDT 544

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E     +F  F         +  G GLGL+I    +++    + + SS+   +T 
Sbjct: 545 GIGISEAAVAHIFEPFHQADAGINRKYGGTGLGLTICNKILHIMESEIRVYSSEGVGSTF 604

Query: 785 NCR 787
           +  
Sbjct: 605 DFT 607


>gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
 gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
          Length = 534

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 108/545 (19%), Positives = 203/545 (37%), Gaps = 64/545 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           + +  +         + +L  A   F     + + N    EL E +      NPS    +
Sbjct: 2   ESLQFSGARDSLVNAIEHLPEAFLFFSTTGAILYANARARELLEENE-----NPSTVNAI 56

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             L++    P   +  +    + S  K  ET         G+ +++ + + P G  +   
Sbjct: 57  LGLQTDEVSPSVKSEDSGGITLKSALKEPET---------GRQIYLNLLNTPAGAVMISN 107

Query: 417 ENLTVQVDLETKY---NTLVKVQ-------------GETIDH----------LSEGVAVF 450
            + T +   + K    N L+K+               ET+D           L   +   
Sbjct: 108 YSTTREEREDAKIIECNELLKLTNYVQSQITRSMNIDETLDAVVKNVPRMVGLENCIIFM 167

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN----------IAATCSRYYNESDGWDLF 500
             DG I           +    R+     I            +    ++Y   S      
Sbjct: 168 IEDGEIVEIKTTEGIRNRLRGMRIRMEDLIATKEAVDKSQPIVVEDVAQYKRLSSKMVDL 227

Query: 501 AAIITSFD---DERKSLQGTLELLS---------DSVLEYSIIPLPNAQTMLTFVNVTDS 548
            A  T        R  + G + L +         D +   + +    A  +   +   + 
Sbjct: 228 LAPTTGLILPLAARGKVIGVMWLYNTKKPRRYSADDISRANALSNQVATAVDNAMLFDEL 287

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A+  L    E L+  D +K  F   +S+ELR+PLT I G+ +LLK   LG +N +Q  
Sbjct: 288 SQAKSELEISYERLKSLDRMKMEFFTLISHELRTPLTTIKGYAELLKDGTLGPVNDEQRD 347

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I AS   L  +V  + DL+ V +         + LN+L+ EV + I        ++
Sbjct: 348 RLSRIDASVDRLTGIVESLSDLSGVASRQYAGEKIPVSLNELIEEVVRGIDFLADLKKLK 407

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I +     L    ADR R+ Q+   +L+NA+ ++  G  + +    +    + +V++ G 
Sbjct: 408 ITLDVPLTLPMISADRSRIQQVLLNVLNNAIKYTPDGGQISISVRDECDHLLIAVRDTGI 467

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP++  +++F+ F  + +    + +G GLGL+I    +  HGG +   S     +T   
Sbjct: 468 GIPKEDIENIFSGFYHSGYKLSYEYKGAGLGLAISRKIVESHGGKIWADSEPGKGSTFFI 527

Query: 787 RIPSK 791
            +P +
Sbjct: 528 SLPKQ 532


>gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A]
 gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1319

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 106/667 (15%), Positives = 239/667 (35%), Gaps = 88/667 (13%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE-----EIKKR 251
            L D     +    + G ++  N   ++ +  + +  Q A  E   L  +     +   R
Sbjct: 308 ALLDKTQTPIIAMWKDGSVILPNKPARRLSYPDPV--QGAPHEGFNLLSQWRMWTDDFSR 365

Query: 252 MISSSA--------LEKNF-CETVSTL-EHGNNKSYKIV-----RVLNSFGEAGI--AID 294
            + +           E  F    V  L        + +        +     AG+    D
Sbjct: 366 QLETDEYPISLMIKSETPFESFRVGMLGPDDERLIFDVEGAVIRDEITGELLAGVITCRD 425

Query: 295 VSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLAT 348
           +++      Q+    E     I   +   +     +    F+N  +     +   A L  
Sbjct: 426 ITRIEHEISQIKAADEERFRLICETMPQLVWTAGPDGAHDFYNSRWYSYTGLSVEASLGG 485

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTS 406
                   + L  A+K         W+ +     ++ E +   +     +G+    +  +
Sbjct: 486 GWRTAFHPDDLAEADK--------RWQNST----RTGEPYVIEYRCRSKDGEWRWFLGRA 533

Query: 407 NP----RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            P    + G I        ++   ++ + +     +     I H    +    P+ ++ L
Sbjct: 534 LPLKNKQTGEIEKWFGTCTDVHETMEAKLEAKRTRQQLRSVIAHSRMTMFAVDPNRKVTL 593

Query: 459 SNPAFRSLWKTEEN---RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE----- 510
              +      + E        G  +  +    ++   +         + +    +     
Sbjct: 594 LEGSLIWDALSPECGSSSWFIGKDVYEVFNNINQQLPDGQTPAFLQPLESILGGKSPVEL 653

Query: 511 ---------RKSLQGTLEL------LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RA 554
                    R   Q  L         ++  +E  +  + +   +       ++   E R 
Sbjct: 654 QDHKFGRWYRTGFQPILRRDPLTGNSTEDFIEGVMGFIMDVTELKDRERDIEAQALEKRQ 713

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L     A ++A  +K+ F+ ++S+E+R+P+T +IG  +LL       L+++Q +  E I 
Sbjct: 714 LLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLD---VELDAEQRELTENIF 770

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++NDILD + +++G + +      L  ++ EV + ++      ++       
Sbjct: 771 RSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVGKMLSFTAERKSLAFNYEIC 830

Query: 675 GKLG---SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNG 727
             +G     + D  R+ QI + + +N++ F+ +G     V ++   D+  +  F +++ G
Sbjct: 831 SDIGIDLVVMGDPGRVRQIITNLATNSIKFTHEGHVKLHVSVEQETDDTIEVKFVIQDTG 890

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E++ K +F  F        R   G GLGL+I ++ + L  G ++++S  +  TT  
Sbjct: 891 IGIEEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLLELMKGRMALASKKDEGTTAT 950

Query: 786 CRIPSKE 792
             IP K+
Sbjct: 951 FWIPFKK 957



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 99/338 (29%), Gaps = 39/338 (11%)

Query: 139 QSFDLVAETQNDCAI--KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL-SNHISVF 195
           +SF +     +D  +   +EG V        +L+      ++     +  ++ +     F
Sbjct: 385 ESFRVGMLGPDDERLIFDVEGAVIRDEITGELLAGVITCRDITRIEHEISQIKAADEERF 444

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKR 251
           +++ +++  LVW     G   + N  +      + E       +       L  E  K+ 
Sbjct: 445 RLICETMPQLVWTAGPDGAHDFYNSRWYSYTGLSVEASLGGGWRTAFHPDDL-AEADKRW 503

Query: 252 MISSSALEKNFCETVSTLEHGNNKSY-------KIVRVLNSFGEAGIAIDVSKEITVNDQ 304
             S+   E    E     + G  + +       K  +        G   DV + +    +
Sbjct: 504 QNSTRTGEPYVIEYRCRSKDGEWRWFLGRALPLKNKQTGEIEKWFGTCTDVHETMEAKLE 563

Query: 305 LTHTYEILHNLT-----VAIAIFDQNRYLQFHNRSFVELWEI------DLAFLATNPSND 353
              T + L ++         A+ D NR +     S   +W+         ++        
Sbjct: 564 AKRTRQQLRSVIAHSRMTMFAV-DPNRKVTLLEGSL--IWDALSPECGSSSWFIGK-DVY 619

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           E+   +       +   +    E+I       E     +          I+  +P     
Sbjct: 620 EVFNNINQQLPDGQTPAFLQPLESILGGKSPVELQDHKFGRWYRTGFQPILRRDPLTGNS 679

Query: 410 -----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                 G +    ++T   D E         + + + +
Sbjct: 680 TEDFIEGVMGFIMDVTELKDRERDIEAQALEKRQLLAN 717


>gi|310830013|ref|YP_003962370.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612]
 gi|308741747|gb|ADO39407.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612]
          Length = 803

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 96/472 (20%), Positives = 185/472 (39%), Gaps = 34/472 (7%)

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           ++    +T+PS    L        +     ++  K  +   ++  +    T+H  N   L
Sbjct: 190 LEQGIRSTHPSYSSALRETFGRQNV--LKAFENGKRELQLDFRQKD-EDGTYHWMNTLLL 246

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS- 459
            V  ++  +G  I M   +  +  LE ++               E + +   DG    + 
Sbjct: 247 RV-GSAAEKGKAILMLSQIDSRKRLEQEWEAFNAGVTTLF---GECMLLNLEDGTYTTAK 302

Query: 460 -NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            + +F       +       +   +     R            +I  S       +   L
Sbjct: 303 FDNSFPEFPVQGDFDSQNIEYCNALIHPDDREMFRKAFS--LESIRESVAAGETVIVREL 360

Query: 519 ELLS-DSVLEYS-------IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-----KA 565
             L+ D V  ++       I      +T++      D +R E                +A
Sbjct: 361 RRLAPDGVYRWTEMIGILVISAAVGERTVVLTFRDVDDIRKEEERKRAALLDALNLAEQA 420

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ F+  +S+++R+P+  IIG   + + +   ++ ++    +  I AS+  LL L+N
Sbjct: 421 NNAKSDFLSRMSHDIRTPMNAIIGMASIAEANIRDTVKTE--DCIHKIQASAHFLLALIN 478

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADR 684
           DILD++ +++G M +      L  LL E++  I  +  E   +  V+    +   +  D 
Sbjct: 479 DILDMSKIESGKMSIIREPFDLCALLRELEVIIDAQAREKGQQFSVLMPAHMEAEYYGDS 538

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVF 739
            RL QI   +LSNA+ ++  G  + L+   D          F V++NG  + E   K ++
Sbjct: 539 LRLNQILMNLLSNAVKYTPDGGKITLRVNEDRKKGKKSVMRFEVEDNGIGMSEAFLKHIY 598

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F  +  + ++R  G GLGLSI  + ++L GG +SISS     T     +P
Sbjct: 599 EPFRQDERKEEKRQEGTGLGLSITRNLVHLMGGSISISSELGKGTCFTVELP 650


>gi|189910030|ref|YP_001961585.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774706|gb|ABZ93007.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 607

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 7/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ++ L E  E    A   K+ F+  +S+E+R+PL  +IG T +L  +    L+++Q  Y+
Sbjct: 286 TQKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQILFET---DLDAEQKSYL 342

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+ +   LLN++NDILD + +DAG + +  +   L +L+ E+    A + +   +  K
Sbjct: 343 KTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEANTKQLEFK 402

Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +  +    V+D  R+ QI   ++ NA+ F+  G  VIL   ++    +F +K++G  
Sbjct: 403 FEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTETG-FVILSIKKEEHSILFQIKDSGIG 461

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +   S+F +F        R   G GLGL+I E  + L  G + + S     +T  C 
Sbjct: 462 ISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKGVGSTFWCS 521

Query: 788 IPS 790
            P 
Sbjct: 522 FPL 524


>gi|218438404|ref|YP_002376733.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218171132|gb|ACK69865.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 404

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 119/251 (47%), Gaps = 2/251 (0%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
               +  R  R +  +NE L++   +K+ F+  +S+ELR+P+  I+GF+ +L       L
Sbjct: 151 QQNQELERQRRQIEIQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRRYPEPL 210

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q+  V+ I  +S  LL L+ND+LD + ++AG + L+     L  L+    + + +  
Sbjct: 211 TPAQTDLVQRIFDNSKNLLTLLNDVLDFSKIEAGKLILHPHEFDLKQLVVLTTEELRSLA 270

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              N+ +++  + +    + D+  L +I   +LSNA+ F+  G   +     +      +
Sbjct: 271 ISKNLSLQIQVEVENPKIINDQSCLRRILVNLLSNAIKFTETGGVSVTVWELNPDLMAIA 330

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I ++  + +F  F         +  G GLGL+I ES I +  G ++++S    
Sbjct: 331 VEDTGIGIAQEHLEHIFEVFRQADQTLTRKYGGTGLGLAISESLIKMMHGKITVTSELGK 390

Query: 781 VTTINCRIPSK 791
            +      P K
Sbjct: 391 GSIFQIEFPRK 401


>gi|313682906|ref|YP_004060644.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155766|gb|ADR34444.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 722

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 11/246 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L    E    A+++K+ F+ ++S+E+R+PL ++IGF+DLL+         KQ QY+
Sbjct: 231 MAEDLKMAKEEAVSANQLKSEFLANMSHEIRTPLNSVIGFSDLLEQEVK---EPKQVQYL 287

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I      LL+L+N+ILDL+ +++G MK+    +     L E+         +  + + 
Sbjct: 288 HAIKNGGKALLSLINNILDLSKIESGHMKVELHPLHFKPFLREIMNMFIEPGKKKGLEVT 347

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG--DFIFSVK 724
              +  L    +AD  R+ QI   ++SNA+ F+ KGS    V+   +++ G  D IFS+K
Sbjct: 348 YEIEKNLPEWIIADEIRIRQILFNLISNAIKFTEKGSVRLSVLSTPSKNEGFVDLIFSIK 407

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I       +F+ F+ N      Q  G GLGL+I      L  G ++I S     +
Sbjct: 408 DTGIGISPKNQIKIFDAFIQNDGQDSRQFGGTGLGLAICRKLAQLMKGDITIESQLGQGS 467

Query: 783 TINCRI 788
                I
Sbjct: 468 EFTFTI 473


>gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 837

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 166/394 (42%), Gaps = 29/394 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            +   + +     +     +D L   V V    + RI   N   +  +  +       T 
Sbjct: 306 ARRQAQEELAGSNRTLLTILDSLPVDVYVADLKNYRILFMNQYMKDSFGRDCTGELCHTA 365

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             + +A C    N S   +          +    +        D V+ ++   L     +
Sbjct: 366 FNHESAPCGHCTNSSLLDETGRPKGVIAWECFNPVTRKWYRNFDQVIPWTDGRLVR---I 422

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              ++++D  RAE  +    +    A+  K+ F+ ++S+E+R+PL  ++G   LL+ +K 
Sbjct: 423 EISMDLSDRKRAEEEILRARDLAEAANCAKSEFLANMSHEIRTPLNGVMGMLQLLQLTK- 481

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+  Q  Y +    S   L+ L+ DILDL+ ++AG + +  + + L+++L +     +
Sbjct: 482 --LDPVQEDYTDTAIQSCNRLVRLLTDILDLSRIEAGKLSIQSAPMELSEVLRQTGDLFS 539

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----AR 714
               E  ++++   D  + S  + D  RL Q+ S ++ N++ F+  G  V + A    + 
Sbjct: 540 PTAREKGLKLRFDVDPAIPSQILGDATRLQQVLSNMVGNSLKFTHSGG-VTVDASLLPSV 598

Query: 715 DNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
             G    +FSV + G  IP+D   ++F  F           +G GLGLSI +  ++  GG
Sbjct: 599 HGGQCRVLFSVADTGIGIPDDKLGNLFQPFSQVTEGFTRSYQGAGLGLSICKRLVSFMGG 658

Query: 771 HVSISSSDEGVTT--INCRI----------PSKE 792
           ++S+ S  E  TT   +             P++E
Sbjct: 659 NISVVSELEVGTTMYFSVTFGAAAPNTASTPARE 692


>gi|115377149|ref|ZP_01464363.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822860|ref|YP_003955218.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365858|gb|EAU64879.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395932|gb|ADO73391.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 156/386 (40%), Gaps = 33/386 (8%)

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            G    +   LT Q  L T+     +     +D + EG+ +   +G +   N A R + +
Sbjct: 88  EGAIDSLHSRLTTQNVLRTQ---EARTLTAVLDGMVEGIWITDAEGTVIRHNDALRVMLQ 144

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +     +  I         +    D  A         R  L+ TLE L    L  
Sbjct: 145 PGRGAIVGQRPLALI--------RDEALNDAVARACREGTSSR--LELTLEGLFPLTLAI 194

Query: 529 SIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            + PL      +   F +VT+  R E               ++  FV +VS+ELR+P+T 
Sbjct: 195 RVTPLGRDLPGSAAVFNDVTELRRLE--------------NVRKDFVANVSHELRTPITA 240

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G+ + L+T  L        + VE I   S  L  LV D+L+L+ +++  MKL ++ + 
Sbjct: 241 IRGYAETLQTGALQDPTV-APKMVEIIHRQSERLSELVEDLLELSRLESREMKLRFADVS 299

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L    +    ++  K    NIR+++     L +   D + + Q+   +L NA+ ++  G 
Sbjct: 300 LAVAASRAADTVKPKAEGKNIRLELHVPSDLRA-RGDERAVEQVLLNLLDNAVKYTPAGG 358

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESF 764
            V ++  ++NG  +  VK+ G  I       +F RF            G GLGLSIV+  
Sbjct: 359 RVDVRGTQENGRCVVRVKDTGVGIEPKHLSRIFERFYRVDKGRSRDMGGTGLGLSIVKHL 418

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           +    G V + S     +     +PS
Sbjct: 419 LGAMEGEVKVESQPNVGSVFVIFLPS 444


>gi|56420003|ref|YP_147321.1| hypothetical protein GK1468 [Geobacillus kaustophilus HTA426]
 gi|56379845|dbj|BAD75753.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 542

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 177/403 (43%), Gaps = 27/403 (6%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           T   IV      G   + +++T  +  + +     KVQ +  + + +        G I  
Sbjct: 4   TFIPIVEKKDVIGLFVVGKDITELIKYQERIK---KVQRDLWNAMCQ------QQGMIF- 53

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
               F    ++  + L  G  + +      +   +     L   I    +   +    T 
Sbjct: 54  ---KFVKREESFIHTLCGGELLNDFGIDPKQVLGKRLHDFLPEPIADQKEQYYRYTWETG 110

Query: 519 ELL------SDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           E L      +      S+ P+       + + + +++T+    E+ +    E   KA++ 
Sbjct: 111 ETLYYGGNINGIDYLVSLRPIKKDGKVIEVVGSAIDITERKMMEQEMLRAKEEAEKANQA 170

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++ +  +S+E+R+PL  ++GF  LL+     SL  +Q ++V+ I   +  LLNL+N++L
Sbjct: 171 KSNLISRMSHEIRTPLNGVLGFAQLLEMDP--SLKGRQREFVQEILGGARHLLNLINEML 228

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRL 687
           DLA ++ G + L Y  +  +D++ E  + +    ++ NI I+  S   +      D  R+
Sbjct: 229 DLARIETGRLPLTYDVVHPDDIIKESIKLVEPLANKKNIDIQARSSFSEQVYLYTDATRV 288

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +L NA+ ++  G TV+++   D    +  VK+NG  IP++  +++F  F     
Sbjct: 289 RQVLLNLLDNAIKYNRDGGTVLIEGKYDQEKVVIHVKDNGIGIPDEEQENIFEPFYRIKG 348

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                G G+GL+ V+  I L GG + + S     +  +  +P+
Sbjct: 349 -THVDGNGIGLAFVKQIIRLLGGTIEVKSKLGVGSDFSFSLPA 390


>gi|302877626|ref|YP_003846190.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580415|gb|ADL54426.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 834

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 97/518 (18%), Positives = 198/518 (38%), Gaps = 47/518 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             +        ++ H L   +  F    D N  + + +    E++E+     A     D 
Sbjct: 179 AQLQTSQNLLTKLSHQLPGMLFQFRLFPDGNVSMPYASDGIFEIFELP----AVQIKEDA 234

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNP---- 408
            L F R         +++    +I    ++ +  +  +   LP      +   S P    
Sbjct: 235 SLLFTRV-----HPEDYEILMASIHESARTQQPWRLEYRVMLPMRGLRWLEGQSRPEKLS 289

Query: 409 RGGTIWM--FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            G  IW     ++T +       + + +           GV  +       + N A    
Sbjct: 290 DGSVIWHGYLSDVTERHQAAVSLHEVSERLALATQAGGVGVWDWD------VVNNALTWD 343

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSV 525
            +               A   S      D     A +  +  +++    +  +     S+
Sbjct: 344 DQMFALYGLHRDQFVGAAEAWSSAILPEDTAQAQACMHNALANKQHYDTEFRVRWPDGSI 403

Query: 526 LEYSIIPLPNA-------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                +            +   T  ++T+  ++++AL    E      + K+ F+ ++S+
Sbjct: 404 HNIRALASVKFDSAGKPLRMTGTNWDITELKQSQQALQRAKEVAESLAQSKSEFLANMSH 463

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  +IG ++L   S   +  +++  +++ I+ SS  L+ ++NDILDL+ ++A  +
Sbjct: 464 EIRTPMNAVIGLSELALDS---TDPAEKQSHLQQINDSSRSLMGILNDILDLSKIEAHQL 520

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
            +      L +LL+ +++         +I   V+ D  +   +  D  RL QI + +L N
Sbjct: 521 SVEKIQFNLTELLDSIQRIFTLSAAGCDIEFNVVRDADIHQLLLGDPLRLRQILTNLLGN 580

Query: 698 AMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           A  F+ KG  V L  ++     D+    FSVK+NG  + +    ++F  F        RR
Sbjct: 581 AFKFTQKG-RVTLNVSKIENTTDSTTLRFSVKDNGIGMSDGQVSTLFQPFSQADSSISRR 639

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I  +   L GG + + S     +T +  +
Sbjct: 640 FGGTGLGLTISRNLAQLMGGDIKVESQAGAGSTFSVEL 677


>gi|222529475|ref|YP_002573357.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456322|gb|ACM60584.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
          Length = 575

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 158/371 (42%), Gaps = 34/371 (9%)

Query: 425 LETKY---NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE K    N L K     +D L  G+  F  + RI   N    ++    E  L  G  + 
Sbjct: 224 LEEKIGESNILRKRLTSLLDSLDIGIIFFDMNKRILTFNRGAENIL---ETNLKVGFSLL 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                C R Y      +LF  +     +E++             +E SI        +  
Sbjct: 281 E----CVRVY------ELFEFLFQQDINEKE-------------IEISINNKTKFLKINK 317

Query: 542 FVNVTDSVRAERALT-EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                +  +    L       L+K + I++ FV +VS+EL++PLT+I GF + LK   + 
Sbjct: 318 KKISYEDNKEGILLILSDITFLKKLERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID 377

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +     ++  I      L+ L+ND+L L+ ++   M +    +V+ +++ E+ + +  
Sbjct: 378 DKDVAIK-FLNIIEVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKI 436

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K  + NI++ +     L   +  R  L QIF  ++ NA+ ++ +   V +   + +   +
Sbjct: 437 KAEKKNIQLDIKVQEGLEMNIY-RDWLKQIFINLIDNAIVYNKENGKVWVTVEKLDNLIV 495

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             VK+ G  IPE   + +F RF         +  G GLGLSIV+  + L+GG V + S +
Sbjct: 496 IKVKDTGIGIPEKEIERIFERFYRVDKGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQE 555

Query: 779 EGVTTINCRIP 789
              +     IP
Sbjct: 556 GIGSEFTVTIP 566


>gi|220907212|ref|YP_002482523.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863823|gb|ACL44162.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1330

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 139/810 (17%), Positives = 285/810 (35%), Gaps = 96/810 (11%)

Query: 47   QRNSLAKKVNETYSFLSEICDQLSKYHSLLT-ENNCLTIVWDGKDETPEIIGQLHQRIDI 105
             R   A   + T     +I   L    S +        ++   +        +    +  
Sbjct: 405  TRRKQA--EDATRRSEQQIRRILDSLFSFVGVMTPDGILIEANRTALEAAALRPADVLGK 462

Query: 106  PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ--SFDLVAETQNDCAIKIE---GRVS 160
            P  DT   S+          +L +A  +   +G+   +D +   + D  I I+   G + 
Sbjct: 463  PFEDTYWWSY----SPELQTQLRQAITRA-AQGEMVRYDAIVRVREDQLITIDFTLGPIF 517

Query: 161  GSCAFLRILSLDGI------YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
                 ++ L   GI       +E+A       ++   ++  + ++ S    +   D    
Sbjct: 518  DEAGRVKYLIPSGIDITERKQAEIA-LQQSQSQVQRQLAEIETIYQSAPIGLNILDTDLR 576

Query: 215  ILWANISYKKN--------------------TETEGIVFQKAIGESRKLFKEEIKKRMIS 254
             +  N                           +T   + +  +     L   EI+    +
Sbjct: 577  FVRINQRLADMNGFSVEEHLGKTIRDLLPDLADTAEALLRPILATGEPLLNVEIRGETPA 636

Query: 255  SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
               +++ + E+   L+  +++   I  V     E   A     E  +         +   
Sbjct: 637  QPGVQQIWLESFLPLKQ-DDRIIGISTVCEEITERKQA-----EEALRRSEERYRTLFET 690

Query: 315  LTVAIAI----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            +     +    FD N+              ID  FL  NP+ ++     ++  K   QL 
Sbjct: 691  MEDGFCVIEILFDANQ------------TPIDYRFLEINPAFEQQTGLHQAVGKTARQL- 737

Query: 371  WKTWKENIFSVYKSSETHKDTWHLPNGQTL---HVIVTSNPRGG-----TIWMFENLTVQ 422
                ++  F  Y       +     NG  +      V + P G         +F+ ++ +
Sbjct: 738  IPNLEDFWFETYGRVALTGEPLRFENGSAVMNRWFEVYAFPVGQPEHHKVALLFKEISER 797

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVA-----VFGPD---GRIKLSNPAFRSLWKT-EENR 473
              LE +         E  D L   +A      +  +   G++K  +   ++++    +  
Sbjct: 798  KRLEAERQQAEIALRENEDRLRMAIASAQLGTWDWNIVTGKLK-WDTGCKAMFGLGPDAE 856

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL------QGTLELLSDSVLE 527
            ++  T    +               L  A   SFD E +++      +  L     +  +
Sbjct: 857  INMETFFAGVHPQDREQLKAMVQSRLNPASGGSFDTEYRTIGLQDKVERWLRSKGQAYYD 916

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVSYELRSP 583
             +  PL  + T+L       +      L        EA  +A+ IK+ F+  +S+ELR+P
Sbjct: 917  ANGNPLRFSGTVLDITQQKQAEAHREQLLQQEQAAREAAERANRIKDEFLAVLSHELRTP 976

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I+G++ LL++ ++ +   K  Q +  I  ++   + L++D+LD + +  G + LN +
Sbjct: 977  LNPILGWSKLLQSPQISA--QKLQQGLATIERNAKQQVQLIDDLLDTSRIIRGQLSLNLA 1034

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             I L++ +    +++        I+++V     LG    D  RL Q+   +LSNA+ F+ 
Sbjct: 1035 VINLSEPILAALETVRLSAETKEIKLEVKLGSWLGQIRGDVGRLQQVVWNLLSNAIKFTP 1094

Query: 704  KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
             G  + ++ ++ +      V++ G  I       VF  F        R   G+GLGL+I 
Sbjct: 1095 PGGRITVRLSQVDRWAQIQVRDTGKGIQPQFLPHVFELFRQEDSSTTRSFGGLGLGLAIA 1154

Query: 762  ESFINLHGGHVSISSS-DEGVTTINCRIPS 790
               +  HGG +  +S  +    T    +P 
Sbjct: 1155 RQVVEAHGGTIMAASQGEGQGATFTVLLPL 1184



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 62/437 (14%), Positives = 127/437 (29%), Gaps = 50/437 (11%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN-----ISY 222
           I  + GI  ++                 + + DSL   V      G ++ AN      + 
Sbjct: 394 IQQIFGISHDITRRKQAEDATRRSEQQIRRILDSLFSFVGVMTPDGILIEANRTALEAAA 453

Query: 223 KKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
            +  +  G  F+     S     + ++++ +  ++  E    + +  +      +     
Sbjct: 454 LRPADVLGKPFEDTYWWSYSPELQTQLRQAITRAAQGEMVRYDAIVRVREDQLITIDFTL 513

Query: 282 VL--NSFGEAGI----AIDVSKEITVN-----------DQLTHTYEILHNLTVAIAIFDQ 324
               +  G         ID+++                 QL     I  +  + + I D 
Sbjct: 514 GPIFDEAGRVKYLIPSGIDITERKQAEIALQQSQSQVQRQLAEIETIYQSAPIGLNILDT 573

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL---NWKTWKENIFSV 381
           +      N+   ++    +         D L +   +A  L   +           I   
Sbjct: 574 DLRFVRINQRLADMNGFSVEEHLGKTIRDLLPDLADTAEALLRPILATGEPLLNVEIRGE 633

Query: 382 YKSSETHKDTW---HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
             +    +  W    LP  Q   +I       G   + E +T +   E       +    
Sbjct: 634 TPAQPGVQQIWLESFLPLKQDDRII-------GISTVCEEITERKQAEEALRRSEERYRT 686

Query: 439 TIDHLSEGVAV----FGP-----DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             + + +G  V    F       D R    NPAF       +   + G   R +      
Sbjct: 687 LFETMEDGFCVIEILFDANQTPIDYRFLEINPAFEQQTGLHQ---AVGKTARQLIPNLED 743

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL--EYSIIPLPNAQTMLTFVNVTD 547
           ++ E+ G          F++    +    E+ +  V   E+  + L   +         +
Sbjct: 744 FWFETYGRVALTGEPLRFENGSAVMNRWFEVYAFPVGQPEHHKVALLFKEISERKRLEAE 803

Query: 548 SVRAERALTEKNEALRK 564
             +AE AL E  + LR 
Sbjct: 804 RQQAEIALRENEDRLRM 820



 Score = 71.9 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 103/318 (32%), Gaps = 30/318 (9%)

Query: 256 SALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLT----HTYE 310
               K      S  +    K+ +   R  N   E  +A   ++   +N  L         
Sbjct: 238 DQDGKVLRMVGSHTDVTERKTLEAALRTANETLEQRVAQRTAELEQINRSLQASELKFRT 297

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQL 369
            + ++     I+D +R +QF NR+ + L       FL     ++E+     +   LP   
Sbjct: 298 AIEHIPDVFVIYDAHRRIQFVNRAGLALSGGSLPDFLGRR--DEEIFPVEVTQTYLPLLQ 355

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-----TIWMFENLTVQVD 424
                K         +  +++ +      T+ V       G         +  ++T +  
Sbjct: 356 QAVATKRYQTGECTIALPNREPY------TIVVQYVPLLDGNGEIQQIFGISHDITRRKQ 409

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E       +     +D L   V V  PDG +  +N             +  G    +  
Sbjct: 410 AEDATRRSEQQIRRILDSLFSFVGVMTPDGILIEANRTALEAAALRPADVL-GKPFED-- 466

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT---- 538
            T    Y+      L  AI  +   E       + +  D    +++++ P+ +       
Sbjct: 467 -TYWWSYSPELQTQLRQAITRAAQGEMVRYDAIVRVREDQLITIDFTLGPIFDEAGRVKY 525

Query: 539 -MLTFVNVTDSVRAERAL 555
            + + +++T+  +AE AL
Sbjct: 526 LIPSGIDITERKQAEIAL 543



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 53/412 (12%), Positives = 112/412 (27%), Gaps = 28/412 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +    AE     + L      F+   + +  +    D    I + N +    +      F
Sbjct: 274 VAQRTAELEQINRSLQASELKFRTAIEHIPDVFVIYDAHRRIQFVNRAGLALSGGSLPDF 333

Query: 234 QKAIGE---SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA- 289
                E     ++ +  +     + +       E    L +    +  +  V    G   
Sbjct: 334 LGRRDEEIFPVEVTQTYLPLLQQAVATKRYQTGECTIALPNREPYTIVVQYVPLLDGNGE 393

Query: 290 -----GIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
                GI+ D++     E            IL +L   + +   +  L   NR+ +E   
Sbjct: 394 IQQIFGISHDITRRKQAEDATRRSEQQIRRILDSLFSFVGVMTPDGILIEANRTALEAAA 453

Query: 341 IDLAFLATNPSNDEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
           +  A +   P  D     +         Q   +  +  +          +D     +   
Sbjct: 454 LRPADVLGKPFEDTYWWSYSPELQTQLRQAITRAAQGEMVRYDAIVRVREDQLITIDFTL 513

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL-------SEGVAVFGP 452
             +   +      I    ++T +   E             +  +         G+ +   
Sbjct: 514 GPIFDEAGRVKYLIPSGIDITERKQAEIALQQSQSQVQRQLAEIETIYQSAPIGLNILDT 573

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           D R    N     +          G  IR++    +    E+    + A      + E +
Sbjct: 574 DLRFVRINQRLADMNGFSVEE-HLGKTIRDLLPDLADT-AEALLRPILATGEPLLNVEIR 631

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNVTDSVRAERALTEKNE 560
                   +    LE S +PL     ++        +T+  +AE AL    E
Sbjct: 632 GETPAQPGVQQIWLE-SFLPLKQDDRIIGISTVCEEITERKQAEEALRRSEE 682



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 91/273 (33%), Gaps = 23/273 (8%)

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           +A+   + Y +  N  F +        L T+P     L+F+   ++       +  K   
Sbjct: 30  LAVVGLDGYFKRINPMFSQTLGYSATELLTSP----FLDFVHPDDRAATLAEMEQLKGGT 85

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQG 437
            ++   +  ++      + + L    +       I+ +  ++T Q   E       +   
Sbjct: 86  PTL---AFENRYLTREGDYRWLSWTASPQLDRAVIYCVARDVTQQKQTEIALRVSEERWQ 142

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             +   ++G+  +         +  ++++   EE+ +S            ++  +  D  
Sbjct: 143 LALRGSNDGIWDWNVQTNEVFFSARWKTMLGYEEDEISHH------LEEWAKRVHPDDLA 196

Query: 498 DLFAAIITSF---------DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
            +  AI   F         +   +   G  + + D             + + +  +VT+ 
Sbjct: 197 WVMQAIQDHFAQKTPFYVAEHRVQCKDGGYKWILDRGQAIWDQDGKVLRMVGSHTDVTER 256

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              E AL   NE L +    + + ++ ++  L+
Sbjct: 257 KTLEAALRTANETLEQRVAQRTAELEQINRSLQ 289


>gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 2478

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 136/304 (44%), Gaps = 17/304 (5%)

Query: 503  IITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +      + K L    E L  S +E      L   Q         +  RA  +L EK E 
Sbjct: 1707 LTQELQSQSKELTQQQEALKRSNIELEEKATLLEEQNRRVEEKNNEVERARVSLEEKAEQ 1766

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L    + K+ F+ ++S+ELR+PL +++    LL  +K G+L++KQ +Y   I AS   LL
Sbjct: 1767 LTVISKYKSEFLANMSHELRTPLNSLLILAKLLSDNKDGNLSTKQVEYANTIYASGGDLL 1826

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSF 680
            +L+N+ILDL+ V+AG M++    IVL +L   +++S      +  +   V    G     
Sbjct: 1827 SLINEILDLSKVEAGKMQVEPRDIVLTELNQFIERSFLPVAEQKGLSFTVEVGPGAPRHI 1886

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD------------FIFSVKNNG 727
              D QRL Q+   +LSNA  F+ +GS  + +K A                   F+V + G
Sbjct: 1887 RTDPQRLQQVLKNLLSNAFKFTDEGSVQLKVKLAEVGTHFDHEVLRRSRYVLGFAVSDTG 1946

Query: 728  SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              I  D  + +F  F         +  G GLGLSI      L GG + ++S     +T  
Sbjct: 1947 IGIARDKQRLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIQVTSEPGRGSTFT 2006

Query: 786  CRIP 789
              +P
Sbjct: 2007 LYLP 2010


>gi|295103591|emb|CBL01135.1| PAS domain S-box [Faecalibacterium prausnitzii SL3/3]
          Length = 1044

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 125/717 (17%), Positives = 275/717 (38%), Gaps = 85/717 (11%)

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           F  +        +  +G    +  ++R+   D + ++     +   +++       ++ +
Sbjct: 67  FRQIQGEGEGRILTADG----APVYVRLYKKDAVDTDGTPIWIMSVQMNWAYENLALVNE 122

Query: 201 SLDFLVWH--RDQAGDILWAN--ISYKKNTETEGIV-------------FQKAIGESRKL 243
           S+   +W+   ++ G+I+  N   ++++      I+               +      +L
Sbjct: 123 SIHSALWYFECNENGEIVHVNWSHAFRQILGYHDILDFPNKLDSWSNLLHPEDYDRVMQL 182

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY----KIVRVLNSFGE--AGIAIDVSK 297
             E I  +  ++    K   E    ++ G    +    +++R L+      AGI  ++  
Sbjct: 183 LLETIADKANTT----KYNVEYRLKMQDGQYHWFRASAEVIRRLDGSANRIAGIISNIDA 238

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN--RSFVELWEIDLAFL---ATNPSN 352
           E     Q               A    N    + N  ++  + ++++ + +     N + 
Sbjct: 239 EKRSRMQAQRAAAFHR------AFTSANLCEYYVNLEKNTFDTFKVEPSLMTAFEQNHTW 292

Query: 353 DELLEFLRSANKLPEQL----NWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHV---- 402
           D L+ FL     + E      ++   +  I    K  ET   ++   + +G+   V    
Sbjct: 293 DGLVRFLVDNYVVEEDKKSVTDFYN-RAYITEKLKGLETELRQECRIVLDGEERWVSNVV 351

Query: 403 -IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL-SEGVAVFGPDGRIKLSN 460
                      +    ++T     ET     +     ++D L    V +        L N
Sbjct: 352 MRGEIEDSEYAMIFLRDITESK-AETARRMQMASDNASMDLLIKSMVRLLDRFVVCDLEN 410

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             +R      E   +P     +     +  Y   +      A+  S ++ RK+LQG  ++
Sbjct: 411 DRYRFYNLQGEMIYAPTGTYHDFVEQVAVRYKTLEPLAAVDALF-SPENIRKNLQGENDI 469

Query: 521 -------LSDSVLEY-SIIPLPNAQT-----MLTFVNVTDSVRAE----RALTEKNEALR 563
                  + ++  +  S IPL    T     +L  ++V+   +AE    +AL +   A  
Sbjct: 470 YKFEYCSIDENTYKIASFIPLEWDGTKLVKALLASMDVSQEKKAEIESHKALKDAYRAAE 529

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A   K  F+ ++S+++R+P+  IIG T +           +  + +  I+ SS  LL L
Sbjct: 530 NASRAKTEFLSNMSHDIRTPMNAIIGLTAI--AGANIESQDRVVECLGKITKSSRHLLGL 587

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVA 682
           +N++LD+A +++G M L      L +L++ +       + E+  +++V  +  +  +   
Sbjct: 588 INEVLDMARIESGRMSLAEEDFSLPELVDNLLTLTKPAIDEHKHQLEVHVEHIEHEAVCG 647

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCK 736
           D  R+ Q+F  ++SNA+ ++  G  + L            G + FS+++NG  +  +  K
Sbjct: 648 DSLRIQQVFVNLMSNAVKYTPDGGNITLTIKEKPNGFSELGCYEFSIEDNGIGMTPEFQK 707

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F  F         +  G GLG++I  + +NL  G++ + S+    T I   +  K
Sbjct: 708 IMFEPFSRADDHRTTKVQGTGLGMAIARNIVNLMNGNIQVESAPNKGTKITVTVYLK 764


>gi|291515872|emb|CBK65082.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 623

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 110/566 (19%), Positives = 217/566 (38%), Gaps = 41/566 (7%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG--EAGIAIDVSKEITVND 303
           +E          L+       +    G    +  VR +       A +A           
Sbjct: 80  DETFVTANGDRCLQVRAVAAANDPLTGVRSVFGTVRRVTEGTPENAELASINQSYKATQR 139

Query: 304 QLTHTYEILHNLTVAI----AIFDQ-----NRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             +H  +++ +L +       + D+     +  L + N+    +  I         +   
Sbjct: 140 NYSHLAQLIEHLPIGYLRVNILRDKSGEAVDYLLSYINQQAGRILGI--------HTQGH 191

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-QTLHVIVTSNP-RGGT 412
             +  R     P +          F    S    + T   P+G +T   ++ + P     
Sbjct: 192 AGKTAREVGIDPLKHI------PTFEHIPSCSFWEQTGKSPDGKRTCRFLIYNTPGDDEL 245

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + + E++T       + +    +     D    G   + P      +   +   +   EN
Sbjct: 246 VILLEDITDATRSREQLDDFEHLFNLVSDFAHVGCVSYNPLTGEGYTKGPWAKNYGEAEN 305

Query: 473 RLSPGT--HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEY 528
             +     H R +     R + E +   L    I +F +E + +  Q  +  +   +L  
Sbjct: 306 TPASQILGHWRQV-HPDDRQHLEEEFERLKTGEIRTFVNEVRIVSDQEPMRWIKIHLLCR 364

Query: 529 SIIPLPNAQTM-LTFVNVTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              P      +     ++++  R E   L E  +   +++++K++F+ ++S+E+R+PL  
Sbjct: 365 DYRPEEGVIDLACVNYDISELKRTEEEELREAKKRAEESNKLKSAFLANMSHEIRTPLNA 424

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL      S +  + +Y + I  ++T+LL +++D+LDLA +++G   +  +   
Sbjct: 425 IVGFSELLADE---SRHETRREYTDIILRNNTLLLQIISDVLDLARIESGRTDIERTQFD 481

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             DL  EV  S+  +     + ++V            R+ L Q+ +    NA+ F+ KGS
Sbjct: 482 ARDLCREVADSLRLQ-RRPGVELRVEEGLPEFPVTEYRKGLAQVLNNFTRNALKFTEKGS 540

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            V +   R  G   F V++ G  I  +  + +F RFV      Q  G GLGLSI +S   
Sbjct: 541 -VTIGFRRIPGHIRFYVRDTGIGIAPEDRERIFERFVKLDTFTQ--GTGLGLSICKSIAE 597

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
             GG V + S     +     IP+ E
Sbjct: 598 QLGGSVGVDSVAGEGSCFRIDIPAGE 623


>gi|218438826|ref|YP_002377155.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171554|gb|ACK70287.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1285

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 6/251 (2%)

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                     LT+  E    A++ K+ F+ ++S+ELR+PL  I+GFT LL      SL+ K
Sbjct: 798  MQQAELLEQLTKAKETADAANKAKSEFLANMSHELRTPLNAILGFTQLLARD--SSLSDK 855

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q +YV  I  S   LL+L+ND+L+++ ++AG + LN +   L  LLN +++    K    
Sbjct: 856  QHEYVGIIGRSGEHLLSLLNDVLEMSKIEAGRITLNENHFDLYRLLNTLEEMFQLKAQSK 915

Query: 666  NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFI-FS 722
             +++       +  ++  D  +L QI   ++ N + F+  GS +  +K +  +   I F 
Sbjct: 916  GLQLIFDCHPDVPQYIKTDESKLRQILINLIGNGIKFTEVGSVILRVKLSLLSTMTIDFE 975

Query: 723  VKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G  I  +   ++F  F+   + R  + G GLGL I + F+ L GG++S+ S+    
Sbjct: 976  VEDTGLGIAPEELDTLFQPFIQTVSGRKSQEGTGLGLPISQKFVQLMGGNISVKSNLNKG 1035

Query: 782  TTINCRIPSKE 792
            +     IP  +
Sbjct: 1036 SMFRFEIPFTQ 1046


>gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
 gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
          Length = 574

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 152/340 (44%), Gaps = 42/340 (12%)

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A    W+T      P   +  +A   +R +N    +DL A + T  +DE   L  +L  L
Sbjct: 260 AAIVAWRTSRAIAEPVITVTQVAEQVARKHN----FDLRAPVTT--EDEIGLLAKSLNRL 313

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + V E +                       + L +  E    A + K+ F+ +VS+ELR
Sbjct: 314 IERVSERT-----------------------KELQQAKELAEAASKAKSVFLANVSHELR 350

Query: 582 SPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL  +IG + LL+       L++     +E I+++   LL+L+N+ILDL+ ++AG M L
Sbjct: 351 TPLNAVIGLSQLLEDDATDLGLSADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTL 410

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              T  +  L+N V  ++   + +N   ++V  D +LG+  AD+ R+ Q+   +LSNA  
Sbjct: 411 YPETFEIATLINNVVLTVKPAIEKNANVLEVHFDEQLGTMYADQTRMRQVLLNLLSNASK 470

Query: 701 FSSKGSTVILKAARDNGDFI---------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ- 750
           F++ G  V L   R+  +           F+V + G  +     + +F  F         
Sbjct: 471 FTTNG-KVTLTVKREKEELRLDAPLGMITFTVTDTGIGMSNRQQQQLFQPFTQGDTSTTK 529

Query: 751 -RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              G GLGL+I   F  + GG + + S     +T   R+P
Sbjct: 530 KYGGTGLGLAISRHFCQMMGGEIIVKSQPGLGSTFTIRLP 569


>gi|300864267|ref|ZP_07109147.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300337732|emb|CBN54293.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 677

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 152/387 (39%), Gaps = 35/387 (9%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T     E ++ TL             G+ +   +GR    NP  + +          G +
Sbjct: 148 TELSKSEERFRTLSACS-------PLGIYLADVEGRCTYINPRCKGI---------CGLN 191

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNA 536
           +        +     +  D   A   ++ +  +       L ++     +     P+ + 
Sbjct: 192 LEEGLIDVWQRSVHPEDRDRVVADWLAWMETGQEYSEEFRLSANGSMRWVHVQSSPMFSD 251

Query: 537 -----QTMLTFVNVTDSVRAERAL------TEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                  + T +++TD  +AE                 +A+ +K+ F+  +S+ELR+PL 
Sbjct: 252 LGKPIGHVGTIIDITDRKQAEEERGRLIGEQVARHEAERANRMKDEFLAILSHELRTPLN 311

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G++ LL+  K       ++  +E I  ++     L+ DILD++ +  G + LN   I
Sbjct: 312 AILGWSKLLRAKKFDQATIDKA--LETIERNAKSQAQLIEDILDVSRILRGKLNLNLHPI 369

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  ++     ++       +I I+ +    +G  + D  RL Q+   +LSNA+ F+ +G
Sbjct: 370 PLGYVIEVAIDALRPLAETKSIAIEFVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEG 429

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
             V ++           + + G  I  +    VF+RF        R   G+GLGL+IV  
Sbjct: 430 GKVEVRLELVGDYAEIQIIDTGIGISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRH 489

Query: 764 FINLHGGHVSIS-SSDEGVTTINCRIP 789
            + LHGG V    +S          +P
Sbjct: 490 LVELHGGTVGAENNSSGIGAKFTVSLP 516



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 13/168 (7%)

Query: 152 AIKIEGRVSGSCAFLR-ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
            I+ E   S    F+        +  + AE      +LS     F+ L       ++  D
Sbjct: 113 PIEAEILTSKVAVFVELFQKTVEVKRQAAELAAVNTELSKSEERFRTLSACSPLGIYLAD 172

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETV 266
             G   + N   K        + +  I   ++    E + R+++         + + E  
Sbjct: 173 VEGRCTYINPRCKGICGLN--LEEGLIDVWQRSVHPEDRDRVVADWLAWMETGQEYSEEF 230

Query: 267 STLEHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
               +G+ +   +        +    G  G  ID++      ++    
Sbjct: 231 RLSANGSMRWVHVQSSPMFSDLGKPIGHVGTIIDITDRKQAEEERGRL 278


>gi|46908672|ref|YP_015061.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092786|ref|ZP_00230571.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|226225048|ref|YP_002759155.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254825378|ref|ZP_05230379.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|254932259|ref|ZP_05265618.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|46881944|gb|AAT05238.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018874|gb|EAL09622.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|225877510|emb|CAS06224.1| two-component sensor histidine kinase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583816|gb|EFF95848.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|293594621|gb|EFG02382.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|328465108|gb|EGF36376.1| two-component sensor histidine kinase [Listeria monocytogenes 1816]
 gi|332312930|gb|EGJ26025.1| Histidine kinase [Listeria monocytogenes str. Scott A]
          Length = 591

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 151/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EVLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKN 462

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           IR+ +            DR +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IRVTIPEKTSASVMIETDRDKLQQIVINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|283851683|ref|ZP_06368962.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573013|gb|EFC20994.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 838

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 155/398 (38%), Gaps = 31/398 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G    +  +LT  V D   +    +      ID+L++G+ V    GR  L NPA  +++ 
Sbjct: 228 GQLALLVSDLTRAVADTTRELKDSLAHTRAIIDNLADGLLVLDARGRASLFNPALLAMFG 287

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E  ++     R  +                +       +E       + L      + 
Sbjct: 288 LTEAEVAG----RAASRAFPPAMAALAASAAASGRCGPVGEEGHVQAAEVRLAGGGTGKA 343

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
               +  A          +       L       ++ D +K  F+  VS+ELR+PLT+++
Sbjct: 344 VATRVRLAG---------EDREGTIILVRDITVEKEVDRMKTEFISTVSHELRTPLTSVL 394

Query: 589 GFTDLLKTSKLGSLNS--------------KQSQYVEYISASSTILLNLVNDILDLATVD 634
           GF  +++      +                +  + ++ I A    L  LV+D+LD+A ++
Sbjct: 395 GFAKIIRRKFADLVAPALAEADPRTWRGAQQIRENLDIIVAEGERLTELVDDVLDIAKME 454

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +G  + N + + L ++ +   ++         + +       L   + DR RL+Q+F  +
Sbjct: 455 SGRCEWNMAALSLAEVADHAVKAATPLAARKGLVLANQVPPTLPLVLGDRDRLVQVFLNL 514

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           + NA+ F++ G  V ++AA D  + + +V++ G  I     + +F +F           +
Sbjct: 515 IGNAVKFTATG-RVDVEAALDGPEILVTVRDTGPGIAAGDLERIFEKFKQAGDTLTEKPK 573

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           G GLGL I    +  HGG +   S     +     +P+
Sbjct: 574 GTGLGLPICRQIVERHGGRIWAESEGGAGSAFRFTLPA 611



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 66/211 (31%), Gaps = 20/211 (9%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           +     +         G + K+   +   R+ ++   E            G   +  +  
Sbjct: 178 FYALVGSVTRPLVALAGYAVKIRDHDFTARLPATGNDEVGVLARAMGSMAGQ-LALLVSD 236

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +  +        D ++E  + D L HT  I+ NL   + + D        N + + ++ +
Sbjct: 237 LTRAVA------DTTRE--LKDSLAHTRAIIDNLADGLLVLDARGRASLFNPALLAMFGL 288

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-- 399
             A +A   ++      + +                   V +          L  G T  
Sbjct: 289 TEAEVAGRAASRAFPPAMAALAASAAASGRCG------PVGEEGHVQAAEVRLAGGGTGK 342

Query: 400 ---LHVIVTSNPRGGTIWMFENLTVQVDLET 427
                V +    R GTI +  ++TV+ +++ 
Sbjct: 343 AVATRVRLAGEDREGTIILVRDITVEKEVDR 373


>gi|83859411|ref|ZP_00952932.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852858|gb|EAP90711.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
          Length = 624

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 184/471 (39%), Gaps = 44/471 (9%)

Query: 344 AFLATNPSNDELLEFLRSANKLPE--QLNWKTWKENIFSVYKSSETH-------KDTWHL 394
            FLA    +D  L  ++   + PE    +    K+N+    +  E H        +    
Sbjct: 15  DFLAAVHPDD--LAAVQKTLREPEVKPGDPGPHKQNLVFRLQHREGHYLWVEGVGEVLCD 72

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            +G+   +  T            N+T ++ +E +           +     GV     + 
Sbjct: 73  ADGRPERISGT----------LRNITDKLRIEQEARQAGMRAQMALRVAGLGVWDLDSES 122

Query: 455 RIKLSNP-----------AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            +   +            A++ +        +   H+  +                   +
Sbjct: 123 GLLRLDATLADILGRPELAYQEISTETLIAFAHPEHLSEVREMSEALLRGDHEQTNLEHM 182

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           I +   E   ++  + ++     +++ +P+   + +    ++T   RAE  L        
Sbjct: 183 IINGRGETVWIKVYIRIVDR---DHNDLPI---RMIGIVEDLTQHKRAEDTLKAALAHAE 236

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A E K+ F+ ++S+E+R+PL  ++G   LL    L  LN +Q ++V+ I +S   LL++
Sbjct: 237 AASEAKSQFLANMSHEIRTPLNGVLGIAQLLA---LTDLNDRQKEFVQTIRSSGRALLSI 293

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VA 682
           + DILDL+ ++AG +KL    +  +D++ E  Q+ A       + +++    +L    + 
Sbjct: 294 IEDILDLSKIEAGKLKLVQRPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMV 353

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  R+ QI S +L NA+ F+  G   +     + G     V + G  + E + K VF RF
Sbjct: 354 DANRVRQILSNLLGNAIKFTETGEVRVDALWTETGRIRVEVHDTGPGMSETVQKRVFGRF 413

Query: 743 VSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 H     G GLGL+I    + L GG + + S            P++
Sbjct: 414 EQADMSHSRSHEGSGLGLAIARELVVLMGGQIGVHSRPGQGACFWFEFPAR 464


>gi|220931586|ref|YP_002508494.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
 gi|219992896|gb|ACL69499.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
          Length = 652

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 159/385 (41%), Gaps = 31/385 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T+   L      L   + + +D ++E + +F   +G+I L N     +   +E  +    
Sbjct: 251 TLFYKLNQANKKLKNEKNKILD-ITEAIFIFIDKEGKITLINKKGCEVLGYQEEEIIGKE 309

Query: 479 HIRNIAATCSRYYNESDGWDL----------FAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + N      R        ++          F   + + D+ R+++     +L D   + 
Sbjct: 310 WVTNFVYKDDRERVRKTLENIVTCGCNNGNNFEHQVVTRDNTRRTILWKNTVLKDERGQI 369

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     + + +++TD    E  L        + ++++  F  ++S+E ++PL  I 
Sbjct: 370 R-------GVLSSGLDITDKKLLEEEL--------EYNKLRTEFFANLSHEFKTPLNVIF 414

Query: 589 GFTDLLKTSKLGSL--NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
               L++ S   +     K   Y++ I+ +S  LL L+ ++LD+  +DA   +LN     
Sbjct: 415 SALHLIEWSLDKNPLKKDKIKSYLKTITHNSYRLLRLITNLLDITKIDANSYQLNICNCD 474

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  ++     S+   ++    +I   ++        D   + +I   +LSNA+ F+ +G 
Sbjct: 475 IVKIVKSAVNSVKGHINNKTRKIVFNTNVNEKIIACDPFDIERILYNLLSNAIKFTGEGD 534

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
            + ++           VK+ G  IPE+M   +F RF            G GLGLS+ +S 
Sbjct: 535 KITVEIKDRGQSLNIIVKDTGIGIPEEMQDYIFKRFRQVDKSFRRNNEGSGLGLSLTKSL 594

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           + LHGG +SI S     +T   ++P
Sbjct: 595 VELHGGSISIESKPGKGSTFIIKLP 619


>gi|320167757|gb|EFW44656.1| integral membrane sensor hybrid histidine kinase [Capsaspora
           owczarzaki ATCC 30864]
          Length = 1474

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 11/249 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R   A   +    ++A+E K+ F+ ++S+E+R+PL  I+G T ++ T+   SLN++QS
Sbjct: 618 DQRRVNAAESEALKEKQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTT---SLNNEQS 674

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y++ I  S+ ILL ++NDILD + ++AG + ++        +   +   +       N+
Sbjct: 675 DYLDTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAATKNL 734

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDF--IF 721
            +    D +L    V D  R  QI   ++SN + F++ GS     +L +  D+      F
Sbjct: 735 LLSCFIDPQLPRVLVGDPNRFQQILVNLVSNGIKFTTSGSVSLRCLLDSEVDDDHLLARF 794

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I  D    +F RF            G GLGL I +S + L GG + + S+  
Sbjct: 795 EVVDTGIGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVTLMGGTIGVDSTRG 854

Query: 780 GVTTINCRI 788
             +     I
Sbjct: 855 EGSRFWFTI 863


>gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 546

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 147/363 (40%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +     I+  ++GV +     RI   N     L        + G     +       
Sbjct: 188 REKQHLNALIEQSADGVMIIDGRWRITTFNHTMEQLTGWSREE-AIGRPCAEVLGIRDAQ 246

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSV 549
                  D          +     + T     +  ++    P  NA  T+L+ +     +
Sbjct: 247 GVNICLNDCPLQRHPELANPVVEGRITTRDGRELFIQNRYAPQRNALGTLLSAIANVRDI 306

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A++A           +E +N+F+  +S+ELR+P++ I GF + +          +  + 
Sbjct: 307 TAQKA----------EEERQNTFISVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREA 356

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I   +  L   + D+LD++ + AG ++L YS + L  L+ EV +  A ++ +  I  
Sbjct: 357 LQVIGEEADRLARQIQDLLDVSRIAAGGLRLEYSDVSLQLLVKEVVRRFAAQVGDR-IEF 415

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++     +    AD +RL Q+F+ ++ NA+ +S  G T+ + A  +    I  V + G  
Sbjct: 416 EIRVPDDMPPVYADYERLRQVFTNLIENAVKYSPNGGTIRIGARAEGEMAIVYVADQGIG 475

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    +F RF    +  R  R G GLGL I  + +  HGG + + S     +     
Sbjct: 476 IPPEEQDLIFERFYRVDNRLRRDRPGSGLGLYITRAIVEAHGGRIWVESQVGRGSRFLFT 535

Query: 788 IPS 790
           +P 
Sbjct: 536 LPL 538


>gi|307153837|ref|YP_003889221.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984065|gb|ADN15946.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1053

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/408 (22%), Positives = 162/408 (39%), Gaps = 31/408 (7%)

Query: 410 GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  +  Q+     + +       + ++ +  G++V    G++  +N     L  
Sbjct: 415 GELAKSFNMMAEQLQKTFAQLHNSQHRLSQFLEAVPVGISVHDTKGKLYYANRKSLELLG 474

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LE 527
                 +    +     T      E    D                   L  L   V LE
Sbjct: 475 ISSPLEAEMEQLTQAYHTYQAGTLELYPTDALPIARALKGKTTYVEDMELHQLDKIVPLE 534

Query: 528 YSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKA----------------- 565
               P+ +    + +      ++T   + E+ L + N  L                    
Sbjct: 535 VWATPIYDEMGNIVYAIAAFQDITQRKQTEQILADYNRTLEAQVNQRTAELAQAKEKAEV 594

Query: 566 -DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            ++ K++F+ ++S+ELRSPL  I+GF+ L+  S  G L++   + VE I+ S   LLNL+
Sbjct: 595 ANQTKSTFIANMSHELRSPLNAILGFSQLMAAS--GDLSAADQENVEIINRSGEYLLNLI 652

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           N+IL +A ++AG   LN     L  LL E+ +    +     +++       +  +V  D
Sbjct: 653 NNILTIAKIEAGKTTLNPKDFDLYHLLGEIDEMFDLEAATRGLKLNFEIPADVPRYVNTD 712

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
             +L Q+   +LSNA+ F+  G   V ++   +     +F V++ G  I +     +F  
Sbjct: 713 EVKLRQVLINLLSNALKFTHVGKIGVYVQTEAKTPTTLLFRVQDTGVGIAQSELDLLFKT 772

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F    + +  + G GLGL+I   F+ L GG  S+ S     TT +  I
Sbjct: 773 FSQTQSGQNSQDGTGLGLAISRQFVQLMGGDFSVESRVGVGTTFSFTI 820



 Score = 38.4 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 12/152 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +++      + L  + V I++ D    L + NR  +EL  I     A      E L  
Sbjct: 433 AQLHNSQHRLSQFLEAVPVGISVHDTKGKLYYANRKSLELLGISSPLEA----EMEQLTQ 488

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKD--TWHLPNGQT-LHVIVTSNPRG----- 410
                +      + T    I    K   T+ +    H  +    L V  T          
Sbjct: 489 AYHTYQAGTLELYPTDALPIARALKGKTTYVEDMELHQLDKIVPLEVWATPIYDEMGNIV 548

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             I  F+++T +   E       +     ++ 
Sbjct: 549 YAIAAFQDITQRKQTEQILADYNRTLEAQVNQ 580


>gi|192362033|ref|YP_001983813.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
 gi|190688198|gb|ACE85876.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
          Length = 1321

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 82/404 (20%), Positives = 156/404 (38%), Gaps = 12/404 (2%)

Query: 398  QTLHVIVTSNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
              +  +    P G  +W     ++T     E +      +     D  +  +     +G 
Sbjct: 765  THVQSVPERLPDGSVLWNGYVSDITPLKQTELELAQTNALNQAIFDAATVSIIATDVNGM 824

Query: 456  IKLSNPAFRSLWKTEENRLSPGT-----HIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
            IK  N     L       +         H  +  A  ++      G D+ A         
Sbjct: 825  IKTFNRGAEVLLGYNAVEMIDKRTPEIIHDPDEMAARAQQLKRELGQDIQAGFEVLVARA 884

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            R       E    + + Y    +P    +    ++  ++     + +     ++ D++K 
Sbjct: 885  RAGWDDESEW---TYIRYDGSRIPVLLAISALRDLEGNIFGYLGIAQDISESKRVDKMKA 941

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+  VS+ELR+PLT I G   +L     G+L    ++ ++    ++  L++LVND+LD+
Sbjct: 942  EFISTVSHELRTPLTAISGALGILTAGGAGTLPEAATRMLQIAHNNALRLIHLVNDLLDM 1001

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
              + AG M+       L  ++ +  ++ A+   + ++   +  D        D  RL Q+
Sbjct: 1002 EKLVAGKMQFEIHMQSLLPIVRQSLETNASYAAQFHVHYVLDPDSDDAMVSVDSLRLEQV 1061

Query: 691  FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
             +  LSNA  FS     V +   R  G    +V ++G  IPE     +F++F        
Sbjct: 1062 LANYLSNAAKFSPPNGQVWVNIRRRMGSVRVTVTDHGRGIPEAFRARIFHKFSQADSSDS 1121

Query: 749  GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             Q+ G GLGL+I +  I   GG V   S++    +    +P ++
Sbjct: 1122 RQKGGTGLGLAICKELIERMGGKVGFDSAEGQGASFYFELPCED 1165


>gi|94986247|ref|YP_605611.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94556528|gb|ABF46442.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 770

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 128/758 (16%), Positives = 248/758 (32%), Gaps = 83/758 (10%)

Query: 99  LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGR 158
           L     +P     L     WL      +L +        G    L            + R
Sbjct: 19  LPLLTALPDPVLLLGEEVTWLNAAARERLGEPPAA----GAWQALFPPEPARLLTLAQAR 74

Query: 159 VSGSCAFLRILSLDGIYSE-LAETT--------LKCKKLSNHISVFKVLFDSLDFLVWHR 209
            +        ++L G  +  LA  T        L  +   + + V + L D L   +  +
Sbjct: 75  AAAGETVRESVTLPGSRAPVLATLTPAGPGQVLLHLRDTRHPLEVAEELIDGLGLGMLVQ 134

Query: 210 DQAGDILWANIS---------YKKNTETEGIVFQKAIGESRKLFKEEI---KKRMISSSA 257
              G +L AN++          +   +       + I    + F  E     + + +   
Sbjct: 135 AADGRVLSANVAGQGLLGLSLAQMTGQVPADTRWRVIRPDGQPFAPEALPMFRALETGEV 194

Query: 258 LEKNFCETVSTLEHG--NNKSYKIVR-------VLNSFGEAGIAIDVSKEITVNDQLTHT 308
                   V   E G    +   +         V+       +  DV++E  +  Q+  +
Sbjct: 195 QRNVLAGVVIPREEGGEETRWMNVTALPRHAPGVVRPKQVTTVFADVTEEQRLRQQMQFS 254

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA-TNPSNDELLEFLRSANKLPE 367
            E   +L  A         + +   +  EL      + A T  +  E           P+
Sbjct: 255 EERYRSLVEA------TSQIVWVTTAEGELLGEQPTWSAFTGQTEAEYRGSGWVEALHPD 308

Query: 368 QLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTL----HVIVTSNPRGGT---IWMFEN 418
                   W++ + S       ++      +G  +      +  +NP G     + + E+
Sbjct: 309 DRAGALAAWQQAVQSRIPYQTEYR--LRRADGVYVPMQARGVAVTNPDGSVREWVGVNED 366

Query: 419 LTVQVDLETKYNTLVKVQGE------------------TIDHLSEGVAVFGPDGRIKLSN 460
           L+     E     L     E                   ++   EG+      GR   +N
Sbjct: 367 LSAVKAAEDHLRALNATLEERVAARTQELADLTRFSTLLLNAAGEGIFGLDASGRTTFAN 426

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           PA   +      RL        I                    +      R+  +     
Sbjct: 427 PAAAHILGYSVERLIGSLQHELIHHHHPDGRPYPVEACPIYQTLQDGQVRRREGEVFWHA 486

Query: 521 LSDSV-LEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             + V + Y + P           ++ F +VT+  RA+ AL E    L++++     F  
Sbjct: 487 RGEPVPVAYVVSPTHGPGGEVTGAVVMFQDVTERQRAQAALEEAITNLQRSNAELEQFAY 546

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             S++L+ PL  +  + +LL     G L+ +  QY+ ++  +   + +L+ D+L  A V 
Sbjct: 547 VASHDLQEPLRTVGSYAELLARRYQGQLDPRADQYLAFMQDAVERMRSLIQDLLGFARV- 605

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            G M      + L D+L +  Q++   +      +   +     +       L+Q+F+ +
Sbjct: 606 -GRMDTGLQPVQLEDVLRQAAQNVQGTLEATGATLSWDTPQ---TVWGHPGLLVQLFTNL 661

Query: 695 LSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           + N + F+  G    V + A ++       V++NG  I  +  + VF  F     R    
Sbjct: 662 IGNGLKFARAGVPPEVHVTAHQEGQQVRIKVQDNGIGIAPEYHERVFAIFQRLNRREAYP 721

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           G G+GL+I    +  HGG +S++S     TT +  +P 
Sbjct: 722 GNGIGLAICRKIVEQHGGSISLTSVPGEGTTFHLTLPL 759



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 43/370 (11%), Positives = 97/370 (26%), Gaps = 57/370 (15%)

Query: 54  KVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLL 113
           +         ++     +Y SL+   +   IVW    E  E++G+               
Sbjct: 243 EEQRLR---QQMQFSEERYRSLVEATSQ--IVWVTTAEG-ELLGEQPTWSAFTGQTEAEY 296

Query: 114 SFENWLKFHHYIKLSKATEKLRKEGQS-------FDLVAETQNDCAIKIEGRVS---GSC 163
               W++  H    + A    ++  QS       + L         ++  G         
Sbjct: 297 RGSGWVEALHPDDRAGALAAWQQAVQSRIPYQTEYRLRRADGVYVPMQARGVAVTNPDGS 356

Query: 164 AFLRI---LSLDGI-------YSELAETTLKCKKLSNHISVFKV----LFDSLDFLVWHR 209
               +     L  +        +  A    +    +  ++        L ++    ++  
Sbjct: 357 VREWVGVNEDLSAVKAAEDHLRALNATLEERVAARTQELADLTRFSTLLLNAAGEGIFGL 416

Query: 210 DQAGDILWANISYKKNTETE-GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           D +G   +AN +           +      E       + +   + +  + +   +    
Sbjct: 417 DASGRTTFANPAAAHILGYSVERLIGSLQHELIHHHHPDGRPYPVEACPIYQTLQDGQVR 476

Query: 269 LEHGNNKSYK----------IVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHN 314
              G    +           +       GE   A+    DV++       L      L  
Sbjct: 477 RREGEVFWHARGEPVPVAYVVSPTHGPGGEVTGAVVMFQDVTERQRAQAALEEAITNLQR 536

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
                     N  L+    ++V   ++    L T  S  ELL         P    +  +
Sbjct: 537 ---------SNAELEQF--AYVASHDL-QEPLRTVGSYAELLARRYQGQLDPRADQYLAF 584

Query: 375 KENIFSVYKS 384
            ++     +S
Sbjct: 585 MQDAVERMRS 594


>gi|298483471|ref|ZP_07001648.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270419|gb|EFI12003.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 869

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 212/505 (41%), Gaps = 25/505 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---LAFLATNPSNDE 354
           +  + +Q      + H++   +  +D + ++ F NRS +++  +                
Sbjct: 373 QNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNRSLLQMLHLPYEAGGRFYEGMMAGS 432

Query: 355 LLEFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +   +     +K+ +Q+  K     I       E H D +   +G+ + +  + +   
Sbjct: 433 IFKIYYNGQDILHKMLKQVASKGESVKIPQGAFMKEVHSDKYFPVSGEIVPIR-SKDAIT 491

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLS--NPAFRSLW 467
           G      N++ +   +  ++  V            E      P G +K    + +  ++ 
Sbjct: 492 GMALSARNISDEEMQKRFFDMAVDESSIYPWQFDMETNCFIFPQGFLKRLGYDESVTTIP 551

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + E +R      ++ I    +R     D          + + E +  +    +++    +
Sbjct: 552 RDEMDRTIHPDDLKEIRPLFNRALTGEDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQD 611

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      +    ++     AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I
Sbjct: 612 ------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAI 665

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF+DLL  +  G  + + +Q++  I+ +  +LL L+NDILDL+ +++G M+  ++   L
Sbjct: 666 VGFSDLLSDTS-GFTSEEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNL 724

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL  V  S    M    + + + + +        D  RL Q+ + +++NA  F+S G 
Sbjct: 725 PLLLKTVHDSQRLNMPP-GVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG- 782

Query: 707 TVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            +      D   G     V++ G  I E+  + +F RF    +  Q  G GLGLSI ++ 
Sbjct: 783 FITFGYEDDEVPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTI 840

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I    G +S++S     T    R+P
Sbjct: 841 IERLNGTISVTSEVGKGTRFTVRLP 865


>gi|284802938|ref|YP_003414803.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284996079|ref|YP_003417847.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
 gi|284058500|gb|ADB69441.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284061546|gb|ADB72485.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
          Length = 591

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 155/369 (42%), Gaps = 29/369 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKN 462

Query: 667 IRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           I++ +I +  + S     DR +L QI   +LSNA++++     V +K      + I  V 
Sbjct: 463 IQV-IIPEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVT 521

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +
Sbjct: 522 DNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGS 581

Query: 783 TINCRIPSK 791
           T    +P K
Sbjct: 582 TFRVTLPKK 590


>gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1198

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 164/361 (45%), Gaps = 25/361 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +Q E   ++   + +    G     N       K ++           + A  +     +
Sbjct: 415 LQLEFFQNIGANIGI----GIHVAQNRK-----KLQDFLEETQAQAEELQAQHTELEGLN 465

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
              +  +  I + ++E +  Q  L L S+  LE     L     ++   N     +AE+ 
Sbjct: 466 AELEAQSQKIQTSEEELRVQQEEL-LQSNQELEERTTLLEEKNQLIQERNQDIQQKAEQ- 523

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                  L ++ + K+ F+ ++S+ELR+PL +I+  + L+  +K   L+ +  +Y E I 
Sbjct: 524 -------LEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENK--DLDKEYIEYAEVIQ 574

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL L+++ILDL+ ++AG MKL ++++ ++++  +++   +       ++  V  +
Sbjct: 575 SSGQGLLGLIDEILDLSKIEAGKMKLEFASVNIDEVSTDMRSMFSPLAKNKQLQFAVEVE 634

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPE 732
            ++     D+ RL QI   +LSNA+ F+++G  V L   +D+      F+V + G  I  
Sbjct: 635 ERIPEVETDKMRLEQILKNLLSNAIKFTTQG-KVSLTVKKDDSGKFVQFTVTDTGIGIAT 693

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D    +F  F       +R   G GLGLSI      + GG + ++S +   ++    +P 
Sbjct: 694 DKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELAKILGGEIELTSKENVGSSFTFSLPV 753

Query: 791 K 791
           +
Sbjct: 754 R 754


>gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192]
 gi|306531662|gb|ADN01196.1| putative histidine kinase [Spirochaeta thermophila DSM 6192]
          Length = 900

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 124/253 (49%), Gaps = 11/253 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R  R L E N  L KA+  K+ F+ +VS+E+R+PL  I+GF + LK    G  + ++
Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALK----GEQDPRE 438

Query: 607 SQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            + +++ + + +  L  L+++ILD+  ++ G + L+ S   L++++  V + +       
Sbjct: 439 REGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYVCRVMEENARRK 498

Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIF 721
            +       DG     V D  RL Q+   ++ NA+ F+ +G   +     + G+      
Sbjct: 499 GLSFSFEIEDGVPVWVVGDPFRLQQVIMNLVGNAVKFTEEGGVRVRVGCVEEGEGRWIEV 558

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  IPE+M + VF  FV       RR  G GLG++I    + L GG V + S   
Sbjct: 559 EVRDTGIGIPEEMREKVFESFVQADTSTTRRYGGSGLGMTIARELVRLMGGDVWLESEVG 618

Query: 780 GVTTINCRIPSKE 792
             T +  RIP  E
Sbjct: 619 KGTRVWFRIPCVE 631


>gi|262164440|ref|ZP_06032178.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
 gi|262026820|gb|EEY45487.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
          Length = 1576

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 100/402 (24%), Positives = 168/402 (41%), Gaps = 45/402 (11%)

Query: 419  LTVQVDLETKYNTLVKVQGE--------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT- 469
            LT  V    ++N  ++ Q E         ++   E   +    G IK+ N     ++   
Sbjct: 677  LTSMVKQREEWNLQLQNQKEKEVLRFKALLESSPEATLIVDTSGIIKMVNEEAEKVFGYG 736

Query: 470  ------EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELL 521
                            + +  A  +++Y    G       + S + E   +    ++++ 
Sbjct: 737  RDELEGYPMHRLFLHDLESARAKHAQWYELRPGNQRIEIAVRSDETEFPVEISSSSVQMD 796

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               ++  SI             N+TD +  E+ L +      +A + K+ F+ + S+E+R
Sbjct: 797  DGLLISVSI------------RNITDRLAFEQTLKKALRDAEQATQAKSVFLANTSHEIR 844

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +PL  I+G T LL      SL   Q + V+ I  S   LL +VND+LDL+ ++A  M L 
Sbjct: 845  TPLNAILGLTHLLSDE---SLTESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILE 901

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
               + L + L EV    +T+    N+  K+     L    +AD  RL QI + +LSNA+ 
Sbjct: 902  ALPLDLKEFLEEVASVFSTQAEAKNLDFKLEMGADLPHWVIADSMRLRQILTNLLSNALK 961

Query: 701  FSSKGSTVILKAAR---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            F+S G  + L A           +     FS+ + G  I E+  K +F  F        R
Sbjct: 962  FTSVGH-IALHAEVIDKFIWKGAEKNIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSR 1020

Query: 752  R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            R  G GLGLSIV   + L  G + + SS+   +T    +P +
Sbjct: 1021 RFGGTGLGLSIVHKLLGLMEGKIGVESSEGQGSTFWTEMPLQ 1062



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 15/147 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +     ++     +L +   A  I D +  ++  N    +++      L   P +   L 
Sbjct: 692 QNQKEKEVLRFKALLESSPEATLIVDTSGIIKMVNEEAEKVFGYGRDELEGYPMHRLFLH 751

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTI 413
            L SA           W E      +      +     +     V ++S       G  I
Sbjct: 752 DLESAR-----AKHAQWYE-----LRPGNQRIEIAVRSDETEFPVEISSSSVQMDDGLLI 801

Query: 414 WM-FENLTVQVDLETKYNTLVKVQGET 439
            +   N+T ++  E      ++   + 
Sbjct: 802 SVSIRNITDRLAFEQTLKKALRDAEQA 828


>gi|265764347|ref|ZP_06092915.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256955|gb|EEZ28301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1039

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 216/511 (42%), Gaps = 40/511 (7%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-ELLEFLRS 361
           + + +   ++ N+     +      L  + +   +    DL +L  NP  +         
Sbjct: 402 EAMANYKNLIDNMP----LLYMQEKLIVNKQGVAD----DLIYLNVNPHFEKHFFRREDV 453

Query: 362 ANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHLPNG-QTLHVIVTSNPRGGTIWMFE 417
             K   +L  ++  E +  +    K +      ++     +   +++    +   I +F 
Sbjct: 454 VGKRASELFPESLPEFLHFIQISLKENRAITFPYYFKKIDRFYDIVLKGAHQENVIDIFC 513

Query: 418 -NLTVQVDLETKYNTLVKVQGETIDHLSEGV----------AVFGPDGRIKLSNPAFRSL 466
            + T     + K N         ++ +++ +           +   +  I+LS    +  
Sbjct: 514 VDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIELS---AQGN 569

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             +EE    P +   +      R   E    DL    +    +E + +           +
Sbjct: 570 NISEEQLAVPDSQYFSKIYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINIRNHTHKIEWV 629

Query: 527 EYSIIPLPNAQT------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           E         +       + +   +T   + E  LT   +   +++ +K++F+ ++S+E+
Sbjct: 630 EAQAAVETRDENGTPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEI 689

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+ +L +++       + +YV  I  ++ +LL L++DILDL+ ++AG ++ 
Sbjct: 690 RTPLNAIVGFSGILASTEEEEE---KQEYVSIIENNNALLLQLISDILDLSKIEAGTLEF 746

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            YS I LN  L +++ ++  K+  ++++++ +    +     ++ RL Q+   +++NA+ 
Sbjct: 747 QYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIK 806

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           F+S+GS +         +  F V + G  IP+D  +S+F RFV      Q  G GLGLSI
Sbjct: 807 FTSRGS-IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSI 863

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +   GGH+ + S +   +T    +P K
Sbjct: 864 CRTLVEHMGGHIGVDSEEGKGSTFWFSLPYK 894


>gi|301163674|emb|CBW23228.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1015

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 216/511 (42%), Gaps = 40/511 (7%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-ELLEFLRS 361
           + + +   ++ N+     +      L  + +   +    DL +L  NP  +         
Sbjct: 378 EAMANYKNLIDNMP----LLYMQEKLIVNEQGVAD----DLIYLNVNPHFEKHFFRREDV 429

Query: 362 ANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHLPNG-QTLHVIVTSNPRGGTIWMFE 417
             K   +L  ++  E +  +    K +      ++     +   +++    +   I +F 
Sbjct: 430 VGKRASELFPESLPEFLHFIQISLKENRAITFPYYFKKIDRFYDIVLKGAHQENVIDIFC 489

Query: 418 -NLTVQVDLETKYNTLVKVQGETIDHLSEGV----------AVFGPDGRIKLSNPAFRSL 466
            + T     + K N         ++ +++ +           +   +  I+LS    +  
Sbjct: 490 VDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIELS---AQGN 545

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             +EE    P +   +      R   E    DL    +    +E + +           +
Sbjct: 546 NVSEEQLAVPDSQYFSKIYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINIRNHTHKIEWV 605

Query: 527 EYSIIPLPNAQT------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           E         +       + +   +T   + E  LT   +   +++ +K++F+ ++S+E+
Sbjct: 606 EAQAAVETRDENGIPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEI 665

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+ +L +++       + +YV  I  ++ +LL L++DILDL+ ++AG ++ 
Sbjct: 666 RTPLNAIVGFSGILASTEEEEE---KQEYVSIIENNNALLLQLISDILDLSKIEAGTLEF 722

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            YS I LN  L +++ ++  K+  ++++++ +    +     ++ RL Q+   +++NA+ 
Sbjct: 723 QYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIK 782

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           F+S+GS +         +  F V + G  IP+D  +S+F RFV      Q  G GLGLSI
Sbjct: 783 FTSQGS-IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSI 839

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +   GGH+ + S +   +T    +P K
Sbjct: 840 CRTLVEHMGGHIGVDSEEGKGSTFWFSLPYK 870


>gi|298482247|ref|ZP_07000434.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271534|gb|EFI13108.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 391

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 184/382 (48%), Gaps = 23/382 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K      + G  + ++   + +   D ++  +N   ++  +        G  ++   A 
Sbjct: 10  RKLERTSHIAGAVLKNVHAFILLINNDFKVLKTNYYQKTGTRKGTEEKRVGDLLQCHNAL 69

Query: 487 CSRY----YNESDGWDLFAAIITSFDDER--KSLQGTLELLS--------DSVLEYSIIP 532
            +      ++      +  AI  +F+  R    L+ TL +++        D+V+  S   
Sbjct: 70  AAEGGCGTHSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGSYFL 129

Query: 533 LPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           L   + M +T  +VT   +AE  L    E   KAD  K++F+ ++S+E+R+PL  I GF 
Sbjct: 130 LNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFA 189

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L      +   +++QY E I  ++ +L+ LVNDILD++ ++AG ++   +T+ +N LL
Sbjct: 190 EVL---GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLLL 246

Query: 652 NEVKQSIATKMHENNIRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++++Q    +++E    I++I++          DR R+ Q+ S    NA+ F+ +GS + 
Sbjct: 247 SDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS-IR 305

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           +     + +  F VK+ G+ IP +    VF RFV       ++G GLGLSI ++ +   G
Sbjct: 306 IGYEARDTELYFYVKDTGAGIPAEKLPDVFERFVKL--NKDKKGAGLGLSISQTIVAKLG 363

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +   S +   +T    IP +
Sbjct: 364 GQIGADSVEGEGSTFWFTIPYR 385


>gi|153002703|ref|YP_001368384.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151367321|gb|ABS10321.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1625

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 126/709 (17%), Positives = 269/709 (37%), Gaps = 74/709 (10%)

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILS---------LDGIYSELAETTLKCKKLSNHI 192
             L   T         G+++G    +R ++         L    S   + T +   L   +
Sbjct: 431  HLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVTKRTHALQQAL 490

Query: 193  SVFKVLFDSLDFLVW--HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
               + L D+++  +     D  G IL  N ++       G   ++ +G++  + K     
Sbjct: 491  LENQTLLDTINQQLLYSVTDPNGVILEVNDNF---CRISGYPREQLVGKTHAILKSGEHD 547

Query: 251  -----RMISSSALEKNFCETVSTLE-HGNNKSYKIV--RVLNSFGE----AGIAIDVSKE 298
                  M       +++   +  L+ H   K +  V   V + +G+      + ID++  
Sbjct: 548  VSFWQSMWQQINSGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFVALRIDITDR 607

Query: 299  ITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELWEIDLAFL--ATNPS 351
                 +  +   +L N+  A     I   D    +   NR    L       +   + P+
Sbjct: 608  KLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPA 667

Query: 352  NDELLE--FLRSANKLPE-QLNWKTWKENIF-SVYKSSETHKDTWHLPNGQTLHVIVTSN 407
               L E   +RSA    E   + + +   I+ +  + SET   T+   +G    V ++  
Sbjct: 668  PLHLPEEVMVRSAELSAEYGHDIQGFDVFIYKARAEGSETRNWTYVRKDGSQFQVSLSVT 727

Query: 408  PRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                      G + +  ++++ +  +    T      +  +    G+  +   G     N
Sbjct: 728  AMRDSVGEIIGYLGIGVDISLMLLQQQALMTASNHLSKAAEVAQLGIWTWNLLGNSLEWN 787

Query: 461  PAFRSLWKTEE---------NRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDD 509
                +++   E            S   H  +I    ++      G DL+ +I  +   D 
Sbjct: 788  ERMFAIYDQPESLREQGLTYEHWSMRVHPDDIVVADAKLKAALQGIDLYDSIFRVVRTDG 847

Query: 510  ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
              + +Q   ++  D             + +   +++T+  + E  L         A   K
Sbjct: 848  TIRYVQAAAQIERDKHGNTI-------RVIGINLDITEQRQLEETLRAAKHEADAASAAK 900

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            ++F+ ++S+E+R+P+  ++G   L++ +   +L+ +Q  YV     ++  LL L+NDILD
Sbjct: 901  SAFLANMSHEIRTPMNAVLGMLQLIQHT---ALSVQQQDYVNKTQIAAKSLLGLLNDILD 957

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
             + +DAG + L+     +  L+ ++   ++    + ++ +    D  L    +AD+ RL 
Sbjct: 958  FSKIDAGKLTLDPHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPSWLLADQLRLQ 1017

Query: 689  QIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVS 744
            QI   +  NA+ F+ +G  ++ ++  R   +      S+ + G  I ++  + +F  F  
Sbjct: 1018 QILVNLAGNALKFTHQGQVIVGIECLRHEANTVTVQISITDTGIGISDEQIERIFTGFEQ 1077

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRIP 789
                  RR  G GLGL+I +  + L GG + ++S     +        P
Sbjct: 1078 AESSTSRRFGGSGLGLAISKRLVELMGGQLQVTSQIGVGSRFWFDVTFP 1126


>gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 512

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 171/401 (42%), Gaps = 31/401 (7%)

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            NG T  V +  N         +++T    +E       +     I+++   + +   +G
Sbjct: 140 ANGPTTIVELR-NSINILARNLQDITKTRAIEE------ERLKTLIENMGSALMMIDREG 192

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            I + N  F++L++  + +L        I           +       +  +    R+ L
Sbjct: 193 NISIVNKKFQTLFELPKEKL--------IGNNFMMLGLPKELEKFIDHVFLTELPYRQQL 244

Query: 515 QGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +  +E+ ++   E     P+         V +     +E         L + ++I+  FV
Sbjct: 245 E--MEIANEVYYEQVYGAPVVGEHGRWLGVVIVMHDVSE---------LVRLEQIRKDFV 293

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+P+T+I GF++ L              ++  I   S  +  LVND+L+L+ +
Sbjct: 294 ANVSHELRTPITSIKGFSETLLDGAFND-EQMLLSFLTIIHDESNRIQVLVNDLLELSKI 352

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +     L+     L D+L  V    + ++   N++  V  +      + D  RL+QIF+ 
Sbjct: 353 ERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQFDVEIEQD-AVILGDVNRLMQIFTN 411

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           +++NA+ +S + +TV L+ + ++   IF VK+ G  I +     +F RF        R  
Sbjct: 412 LINNAIAYSKEETTVTLRISANDQYGIFEVKDEGIGIEKAEISRIFERFYRVDRARSRNS 471

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            G GLGLSIV+  I  H G + + S     T+I   +P K+
Sbjct: 472 GGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKVYLPLKD 512



 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP--- 350
           D++K   + ++      ++ N+  A+ + D+   +   N+ F  L+E+    L  N    
Sbjct: 162 DITKTRAIEEE--RLKTLIENMGSALMMIDREGNISIVNKKFQTLFELPKEKLIGNNFMM 219

Query: 351 -SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               + LE       L E    +  +  I +     + +       +G+ L         
Sbjct: 220 LGLPKELEKFIDHVFLTELPYRQQLEMEIANEVYYEQVYGAPVVGEHGRWL--------- 270

Query: 410 GGTIWMFENLTVQVDLET 427
            G + +  +++  V LE 
Sbjct: 271 -GVVIVMHDVSELVRLEQ 287


>gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 675

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 158/385 (41%), Gaps = 14/385 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
             +   +  +   E              D+ ++G+       +++  N A + L+     
Sbjct: 122 TALAAEIDERRRAEELLWNSQARWRAVFDNAADGIITLNESLQVETYNTAAQRLFGYS-C 180

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
               G  I  +        + +        I T      +   G++ L   S+   ++  
Sbjct: 181 EQIVGLQISLLMPGVELDSSNAAAPQAGRRIETLC----RRSDGSMFLADVSL--GTVPQ 234

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +   +    ++T   R ++ L E   A   A   K+ F+ ++S+E+R+P+T I+GF+D
Sbjct: 235 SKSHGYIAIIRDITRQRRDQQELEEAKRAAESASHAKDEFLANMSHEIRTPITAILGFSD 294

Query: 593 LL-KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           LL    +L +      +  + +  +   LL+L+ND+LDL+ ++AG + +        +++
Sbjct: 295 LLIHDQRLQNEFPNWFESAQTVYRNGEHLLSLINDVLDLSKIEAGRLLIESIRCSPLEIV 354

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS---T 707
            +V Q ++ K  E ++ + V     +  + V D  R+ Q+   ++ NA+ F+ +GS   T
Sbjct: 355 RDVCQLMSLKASEKDLTLDVSFRTDIPVTAVTDPTRIKQVLINLVGNAVKFTPRGSVQIT 414

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           V + ++         V + G  +       +F  F        RR  G GLGL I +  +
Sbjct: 415 VDIHSSGHATMLAVEVTDTGIGMTSAQIDRLFQPFTQADASTTRRFGGTGLGLVISKRIV 474

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG VS+ S     +T    +P 
Sbjct: 475 EALGGQVSVVSQSGEGSTFRVLLPL 499


>gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1329

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/388 (21%), Positives = 172/388 (44%), Gaps = 33/388 (8%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +++  + T  +  +T  +T++   G +I      + +F  + ++K  +          + 
Sbjct: 442 LFLISDETSGIQKDTILDTIMLSAGNSI------LVIFDKNRKVKYMSKQLTDYL-VVDW 494

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ----GTLELLSDSVLEY 528
           +   G  + N+              D+  A+  +FD++          TL   +D+    
Sbjct: 495 KDVMGQPLENMPK-------CGMPEDVVVALKKTFDEQGVWKDTFMLQTLNTHTDTWFRG 547

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
               L   ++++ ++     +     +    E    A + K+ F+ ++S+E+R+P+  II
Sbjct: 548 EACTLKVQESVVGYMLSMIDIS---EVVAAREIAEHATQAKSEFLANMSHEIRTPMNAII 604

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   L++ +K   L+ +Q  ++E IS ++T LL ++N+ILD + ++A    L  + +VL 
Sbjct: 605 GMAHLIQETK---LDERQLGFIERISHAATSLLGIINNILDFSKIEANKQDLEITQLVLQ 661

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST 707
           D++ EV      ++    I + V  D ++    + D  RL QIF+ +++NA  F+  GS 
Sbjct: 662 DIIGEVAALAEVRIAGRPIELIVDIDPEIPEVLMGDPLRLSQIFTNLINNATKFTESGS- 720

Query: 708 VILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
           + L+  ++     N    FSV + G  +  D    +FN F         +  G GLGL I
Sbjct: 721 ITLQIKQEQVIGNNIKLSFSVIDTGIGMTTDQLHHLFNAFTQADGSITRKYGGTGLGLVI 780

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +S + L GG + + S     +     I
Sbjct: 781 SKSLVELMGGELQVESEYGKGSKFFFTI 808



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 78/215 (36%), Gaps = 33/215 (15%)

Query: 251 RMISSSALEKNFCETVSTLEH--GNNKSYKIVR--VLNSFGEAGIAIDVSKEITVNDQLT 306
           ++     +  +  + +  +    G +  +K++   ++   G       +S E +   +  
Sbjct: 397 KVSKGGEMHASERQIIIPVRSCTGEDAWWKVIFQFLVEDDGSIRYLFLISDETSGIQK-- 454

Query: 307 HTYEILHN--LTVA---IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
               IL    L+     + IFD+NR +++ ++   +   +D   +   P     LE +  
Sbjct: 455 --DTILDTIMLSAGNSILVIFDKNRKVKYMSKQLTDYLVVDWKDVMGQP-----LENM-P 506

Query: 362 ANKLPEQL---------NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
              +PE +             WK+    + ++  TH DTW      TL V  +     G 
Sbjct: 507 KCGMPEDVVVALKKTFDEQGVWKDTF--MLQTLNTHTDTWFRGEACTLKVQES---VVGY 561

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +    +++  V          + + E + ++S  +
Sbjct: 562 MLSMIDISEVVAAREIAEHATQAKSEFLANMSHEI 596


>gi|329890494|ref|ZP_08268837.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
 gi|328845795|gb|EGF95359.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
          Length = 539

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 167/395 (42%), Gaps = 26/395 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
               + +++T +  L     T  +      ++  + +     DG  K  +PA + L    
Sbjct: 3   ALFGVLQDVTERERLLRAAQTNERRYRLLAENTGDVITRVKMDGSSKYISPAIQQLLGWT 62

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI---ITSFDDERKSLQGTLELLSDSVLE 527
                       ++   + Y +  D   +  AI   + + +  R   +   +      +E
Sbjct: 63  ---------YEEMSGQSTDYVHPEDRHLVLGAIGKAVKTGEPTRLEHRAVHKNGETVWVE 113

Query: 528 YSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +   L +    +        ++T     E  + E  E    A + K+ F+ ++S+ELR+
Sbjct: 114 CTFKALKDEHGQVDDVVVVIRDMTQRKTLEAEVLEAKETAEAAVQAKSEFLANMSHELRT 173

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT++IGF+ LL+ S+   L  ++  YVE I+ +S  LL ++NDILD + ++A  ++++ 
Sbjct: 174 PLTSVIGFSGLLQGSEH--LPPEERIYVERIATASEALLGVINDILDYSKLEADAIEMDP 231

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
                  L++     I ++     + ++V+      +    D+ RL Q+    LSNA+ F
Sbjct: 232 EPFDTRALVDGAAAIIESQCSLKGLILRVVVAADTPARLTGDKGRLRQVMLNFLSNAVKF 291

Query: 702 SSKGS-TVILKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           +++G  T+ L    D         +V + G  IP +    +F+RF        R   G G
Sbjct: 292 TARGEVTLTLDGRFDESGLWRMRAAVSDTGIGIPPEKISELFHRFTQADASTTRVYGGTG 351

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL+I    + L GG + + S+    +T     P 
Sbjct: 352 LGLAISRRLVELMGGEIGVDSTPGQGSTFWFEAPL 386


>gi|284052123|ref|ZP_06382333.1| GAF sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 928

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 126/241 (52%), Gaps = 5/241 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  EA   A+  K+ F+ ++S+ELR+PL  I+GFT LL  +    L S+Q +Y++ I
Sbjct: 447 QLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQNY--GLTSQQQEYLQII 504

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+L+N++LDL+ ++AG + LN +   L  LL  +   +  K    N+ + +  
Sbjct: 505 QQSGKYLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQL 564

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIP 731
              +  +V  D  +L Q+   +L NA+ F+  GS T+ +          F V++ G  I 
Sbjct: 565 QQDIPDYVQTDESKLRQVLVNLLDNAIKFTDAGSVTLRVSFVSSVSQLYFEVEDTGPGIT 624

Query: 732 EDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            D  + +F  FV     R  ++G GLGL+I + +++L GG ++I S  +G       IP 
Sbjct: 625 PDEQERLFKPFVQTDVGRRHQQGTGLGLAISQQYVSLMGGKITIVSVVDGGAKFMFNIPV 684

Query: 791 K 791
           +
Sbjct: 685 E 685


>gi|311747684|ref|ZP_07721469.1| sensor histidine kinase/response regulator fusion protein
           [Algoriphagus sp. PR1]
 gi|126575672|gb|EAZ79982.1| sensor histidine kinase/response regulator fusion protein
           [Algoriphagus sp. PR1]
          Length = 981

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 135/656 (20%), Positives = 250/656 (38%), Gaps = 70/656 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK------KNTE 227
           I  ++ E T K  +      +     D      W  D   + L  N          K  +
Sbjct: 209 IARDITERTEKKNRELQVEQLMIEAPDQNKSGTWQYDSEEEKLILNPVAAQFFGGIKTID 268

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                    + E +KL+K+  +  +  +   E+   +    L     K  K+  +     
Sbjct: 269 FANESLSSGLEEFKKLWKKAFQLALSKAGESEEFEIQ----LAGAQEKFLKVKILPFEEQ 324

Query: 288 ---EAGIAIDVSKEITVNDQLTHTYEILHNLTV--AIAIFDQNRYLQFHNRSFVELWEID 342
               AGI  D        ++     E L N+++  ++ +F  +  +   N     L+ +D
Sbjct: 325 QKIHAGIIWDDY-SNQKKNKKIEALETLFNVSIEPSMVVF-PDGEIFLSNEQTNLLFGLD 382

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQ--- 398
                      + L+ L+  + L E    WK W +N        E  K   ++ NGQ   
Sbjct: 383 ST---------QELKHLKELSSLFEHSELWKDWIKNSDE-----EIFKTHSNILNGQGKQ 428

Query: 399 -TLHVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGV--AVFGP 452
             L   V S    G  ++   F N++ +++LE              + +  G+   V   
Sbjct: 429 FFLETSVKSTNIDGQRYIQLSFRNISEKLELEKTLEKNNDFLMNLTEQVPGGLYQMVLDS 488

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +GR+      F  L K   + L       +  +  S   ++    DL   I++S    +K
Sbjct: 489 EGRMN-----FSFLSKGITSVLGISPEEMDEVSDISVAISKVHPMDLPKVIMSSVASSKK 543

Query: 513 --SLQGTLELLSD------SVLEYSIIP--LPNAQTMLTFV--NVTDSVRAERALTEKNE 560
               Q    + S         +  +  P  L N   +      ++++    E  L E   
Sbjct: 544 QEPWQCQFRVKSGVNSEEYRWVLGAARPQLLANGDMVWYGYLTDISEQKEFENKLNEARM 603

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              KA +IK+ F+  +S+ELR+PL  I G    L   +    NS Q   +  I+ +   L
Sbjct: 604 TAEKASQIKSEFLSMISHELRTPLNAISGSVYSLLQEE---TNSSQESALNTINFAVDNL 660

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM--HENNIRIKVISDGKLG 678
           + ++ND+LD   ++AG + +        +L+N++ + ++      +NN+ +  IS+G   
Sbjct: 661 IIMINDLLDFQKIEAGKLTIEKEPFQFQNLINQIIKGLSFHAGDSKNNLNLH-ISEGLEI 719

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR---DNGDFIFSVKNNGSSIPEDM 734
               D+ RL QI + +++NA+ F+++G   V +K      +     F VK++G  I ++ 
Sbjct: 720 WLKGDKTRLSQILNNLITNALKFTNEGDVDVTVKLKESSNEKAKVYFEVKDSGIGIAKEN 779

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +FN F  V      +  G GLGLSI    + L GG + + S     +     +
Sbjct: 780 QDKIFNDFDQVRPTFSTKYGGTGLGLSITRKLLQLMGGTIQLESEVGKGSKFYFEL 835


>gi|118443557|ref|YP_878388.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134013|gb|ABK61057.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 653

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/509 (19%), Positives = 201/509 (39%), Gaps = 46/509 (9%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR- 360
            + ++H   +L+NL+  + ++D+     F N++ ++L   ++       +     ++L  
Sbjct: 137 KEGVSHLKNVLNNLSEGLIVYDEFGNFSFCNKAAIDLMGKEI----KRRNFRNFFQYLNK 192

Query: 361 -----SANKLPE---QLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
                   +L E     N+K      F +  KS+E HK+ +   N    + I+  N    
Sbjct: 193 LINQSEEIRLQELYYNYNFKHIPIKDFEIKLKSNENHKEVYIQLNS---NYILKDNSIIN 249

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTE 470
            I   +++T   + E K     +   + ++ +   +AV   D  + KL N  +R + K  
Sbjct: 250 NILTLKDITNIKNKEIKLQEQREFINDVVNTIDVPIAVIEFDDLKYKLINNKYREILKYN 309

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            N          I    +  + +              ++E       ++  + + + Y I
Sbjct: 310 NNIEGKIVKEPEILNVINNVFTKD-----------RCENEYIVAPYAIKDSNGNNIYYKI 358

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTE---------KNEALRKADEIKNSFVQHVSYELR 581
                 +         D  R  R              N  L+   ++K+ F   +S+ELR
Sbjct: 359 ------KFSAKISENNDINRLNRLFICAGDITEEITNNNELQSISDMKDEFFNMISHELR 412

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I     L +      +     + +  I  +   LL L+N+ILD++  +AG ++L 
Sbjct: 413 TPLTIINSSVQLARNVYKNEITDTIDKVLMRIDQNCRRLLKLINNILDISKAEAGFLQLE 472

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           YS   +  +   +  S++       I +   ++ +      D+ +  +I   +LSNA+ F
Sbjct: 473 YSFFNIVSVTESIVSSVSIYAKSKEINLIFDTNEEEKMVALDKDKYEKIILNLLSNAIKF 532

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLS 759
           +     + +            VK+ G  IP+D   ++FNRF+   +  +    G GLGL+
Sbjct: 533 TPDNKNIYVTICSQKDVVKVKVKDEGVGIPKDSLDNIFNRFIQINNSVKNVTPGTGLGLA 592

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           +V++F+ L  G++ ++S     T      
Sbjct: 593 LVKNFVELMNGNIKVNSKVNKGTEFTITF 621



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 76/204 (37%), Gaps = 18/204 (8%)

Query: 310 EILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAF-------LATNPSNDELLEFLRS 361
           ++   L   +AI D+ N  +++ NR+F++++ ID  F       +    + +++++    
Sbjct: 3   QVYDKLPFGVAIIDETNLNIKYMNRAFIDMFNIDADFQYKSLFAIDFFKNLEQIIKNCIK 62

Query: 362 ANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVT-SNPRGGTIWMFENL 419
                +    +   +  F +  +  E   + +     Q +++     N     + M   L
Sbjct: 63  FKIDKKLRQIEILHKRYFDIIINICEKEVNIFFYEVSQYINLNSQLKNSNDSFLRMCSEL 122

Query: 420 TVQVDLETKYNTLVKV----QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             + D+        K         +++LSEG+ V+   G     N A   L   E     
Sbjct: 123 KTKCDVLQSLRGKEKEGVSHLKNVLNNLSEGLIVYDEFGNFSFCNKAAIDLMGKE----I 178

Query: 476 PGTHIRNIAATCSRYYNESDGWDL 499
              + RN     ++  N+S+   L
Sbjct: 179 KRRNFRNFFQYLNKLINQSEEIRL 202


>gi|46202456|ref|ZP_00053185.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1136

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 101/475 (21%), Positives = 187/475 (39%), Gaps = 42/475 (8%)

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK--TWKENIFSVYKSSETHKDTWH 393
            + L E++    AT      ++E L ++N+  + LN +     E + S  +  ET  +   
Sbjct: 673  IRLIELEQELTATREHLQTVVEELETSNEELQALNEEMQAANEELQSSNEELETSNEELQ 732

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
              N +                + E L V+    ++            D++   + V    
Sbjct: 733  STNEE-------------LTTVNEELQVR---TSELAAANADLQNIQDNVGFPMLVVDKG 776

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             RI    P    L+    +          +       ++  D  +L   +++S     + 
Sbjct: 777  LRITRFTPQAARLFGLLPSDAG------QLITAVPSQFHVKDLRNLLVTVVSSGLSHEEI 830

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--------------ALTEKN 559
            +     +    +  Y  +    A  +LTF++ TD    ++               L E  
Sbjct: 831  IDAEGRIYRMGIFPYRDLREQTAGAILTFIDETDLRNTQKDLEASIDSLRSTQGELKEAK 890

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618
                 A+  K+ F+ ++S+ELR+PL  ++GF  ++     GSL N +  +Y+  I  S  
Sbjct: 891  NIAESANRAKSEFLANMSHELRTPLNAVLGFAQIMADEMWGSLGNDRYKEYIGIIVNSGQ 950

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL L+  +LD++ ++AG   L  S + ++D++    + ++++   + I +       L 
Sbjct: 951  HLLALIGQVLDMSVIEAGRTTLRESNVNISDVIVTSMRLLSSQAENSEINLTASVPDDLP 1010

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                D   + +I   +L NA+ F+  G  V L A+ D       V++ G  I       V
Sbjct: 1011 HMRGDLTAIQRILLNLLGNALKFTPAGGAVTLTASHDQSGVTICVRDTGIGISAHDLDRV 1070

Query: 739  FNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               F        R +R GVGLGL I +S + LHGG +SI S +   TT     P+
Sbjct: 1071 LMPFEQGGQRILRKEREGVGLGLPITKSLMELHGGTLSIDSKEGKGTTACVHFPA 1125


>gi|254831077|ref|ZP_05235732.1| two-component sensor histidine kinase [Listeria monocytogenes
           10403S]
          Length = 591

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 155/369 (42%), Gaps = 29/369 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + ++D++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDDVIEQSARTIFEMATEKN 462

Query: 667 IRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           I++ +I +  + S     DR +L QI   +LSNA++++     V +K      + I  V 
Sbjct: 463 IQV-IIPEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVT 521

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +
Sbjct: 522 DNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGS 581

Query: 783 TINCRIPSK 791
           T    +P K
Sbjct: 582 TFRVTLPKK 590


>gi|292492086|ref|YP_003527525.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580681|gb|ADE15138.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 914

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 111/666 (16%), Positives = 239/666 (35%), Gaps = 78/666 (11%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWANI-SYKKNTETEGIVF 233
             ++E     ++L       + L + L   +V+  D     +  N  ++K       +  
Sbjct: 131 RNISERKQMERQLRERAEEIEKLMEVLPLGIVFAHDPECQRITGNPTAHKLLQLPPQVNL 190

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV------------- 280
            K    + +    ++ +        E       +      +  + +V             
Sbjct: 191 SKTAPPNERPLNYKVCRNGHEIPPQELPLQYAATHGVEVRDSEFDLVFNDGSATSIYGYA 250

Query: 281 -----RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
                      G  G  +D+++       L+ +               Q+  +Q  N S+
Sbjct: 251 SPLFDEKGQVRGCIGAFMDITERKRAEQALSESRRR------------QSAVIQASNASY 298

Query: 336 VELWEIDLAFLATNPSNDELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKD---- 390
            E +  DL++   +    E+L + L     +PE+ +W   + +     ++ + + D    
Sbjct: 299 YE-FATDLSWGTVDRRFAEMLGYSLDEIPPVPERWDWWEQRLHPEDRERTLQAYHDFVQD 357

Query: 391 -------TWHLPNG----QTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNTLV 433
                   + L +     +   V+ T+  R           +  ++T Q   E       
Sbjct: 358 LIPVLRQEYRLRHKDSSWRWWRVVSTTVKRNSQEYATAIAGLIFDITEQRQAEEALRESE 417

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR-----LSPGTHIRNIAATCS 488
           +      + + + +    PDG  + +NP F    +               H  ++    +
Sbjct: 418 ERFRVMAETVPDIIFTSRPDGSREYTNPRFYEHTRLTPEAAEGSGWMAALHPDDLEQVKT 477

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R+ +  +  +LF A     D   +              +    P+ N    +T      S
Sbjct: 478 RWRHSVETGELFEAQYRLRDGNGRY----------RWFQGRAHPIRNETGQITKWFGACS 527

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                 L    EAL++ D  KN F+  + +ELR+PL  I    +L++        + QS+
Sbjct: 528 DI--HDLVHIQEALKETDRCKNEFLAMLGHELRNPLAPICNAVELMRMHLHHP--AIQSK 583

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I   +  L  LVND+L++A +  G + L    + L +++ +  ++    +      
Sbjct: 584 SIDIIDRQAKHLTRLVNDLLNVARIVTGKINLKTQPVELKEVVMQAVETAQPAIESARHE 643

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNG 727
           + +    +     AD  RL+QI + +L+NA++++  G  + L+ A+   G+ I  V++NG
Sbjct: 644 LTLSLPAQPLKVEADPVRLVQIVANLLNNAVNYTPSGGHIQLQVAQSQEGEAIIRVRDNG 703

Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH-VSISSSDEGVTTI 784
             I  +    +F+ F          + G+GLGL++V     +HGG   ++S      +  
Sbjct: 704 VGILPEKLPYIFDIFTQADRSLDQAQSGLGLGLTLVHRLTEMHGGKAFALSEGPGRGSEF 763

Query: 785 NCRIPS 790
              +P 
Sbjct: 764 TIHLPL 769



 Score = 74.2 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 26/286 (9%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
           +   IL ++T A  + DQ   L + N + + L +  L  +                   P
Sbjct: 32  NIENILDSITDAFVLIDQQWRLTYINPAAIRLMDKPLEEILGQVCWGLF----------P 81

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
           E      + +   ++ ++   H + ++ P+          +  G +++ F N++ +  +E
Sbjct: 82  EAKETDFYTQLHRAMEENIPVHFEAFYFPSALWYECDAYPSADGLSVF-FRNISERKQME 140

Query: 427 TKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEENR---LSPGTHIRN 482
            +     +   + ++ L  G+     P+ +    NP    L +         +   + R 
Sbjct: 141 RQLRERAEEIEKLMEVLPLGIVFAHDPECQRITGNPTAHKLLQLPPQVNLSKTAPPNERP 200

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNA---- 536
           +     R  +E    +L      +   E +  +  L     S         PL +     
Sbjct: 201 LNYKVCRNGHEIPPQELPLQYAATHGVEVRDSEFDLVFNDGSATSIYGYASPLFDEKGQV 260

Query: 537 -QTMLTFVNVTDSVRAERALTEKNEALRKADEIKN----SFVQHVS 577
              +  F+++T+  RAE+AL+E         +  N     F   +S
Sbjct: 261 RGCIGAFMDITERKRAEQALSESRRRQSAVIQASNASYYEFATDLS 306



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 117/396 (29%), Gaps = 30/396 (7%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            + DS+       DQ   + + N +  +  +         +        +E         
Sbjct: 35  NILDSITDAFVLIDQQWRLTYINPAAIRLMDKPLEEILGQVCWGLFPEAKETDFYTQLHR 94

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----IL 312
           A+E+N           +   Y+     ++ G +    ++S+   +  QL    E    ++
Sbjct: 95  AMEENIPVHFEAFYFPSALWYECDAYPSADGLSVFFRNISERKQMERQLRERAEEIEKLM 154

Query: 313 HNLTVAIAI-FDQNRYLQFHNRSFVELWEIDLAFLATN--PSNDELLEF--LRSANKLPE 367
             L + I    D        N +  +L ++      +   P N+  L +   R+ +++P 
Sbjct: 155 EVLPLGIVFAHDPECQRITGNPTAHKLLQLPPQVNLSKTAPPNERPLNYKVCRNGHEIPP 214

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLT 420
           Q     +        + SE         +G    +   ++P         G I  F ++T
Sbjct: 215 QELPLQYAATHGVEVRDSE---FDLVFNDGSATSIYGYASPLFDEKGQVRGCIGAFMDIT 271

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL----SP 476
            +   E   +   + Q   I   +     F  D      +  F  +     + +      
Sbjct: 272 ERKRAEQALSESRRRQSAVIQASNASYYEFATDLSWGTVDRRFAEMLGYSLDEIPPVPER 331

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                       R        D    +I     E +            V+  ++    N+
Sbjct: 332 WDWWEQRLHPEDRERTLQAYHDFVQDLIPVLRQEYRLRHKDSSWRWWRVVSTTVK--RNS 389

Query: 537 QTMLT-----FVNVTDSVRAERALTEKNEALRKADE 567
           Q   T       ++T+  +AE AL E  E  R   E
Sbjct: 390 QEYATAIAGLIFDITEQRQAEEALRESEERFRVMAE 425



 Score = 44.5 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 96/292 (32%), Gaps = 33/292 (11%)

Query: 38  IIPIILLIRQRNSLAKKVNETYSFLSEICDQ--LSKYHSLLTENNCLTIVWDGKDET-PE 94
            I   + I +R    + ++E+    S +      S Y       +   + W   D    E
Sbjct: 263 CIGAFMDITERKRAEQALSESRRRQSAVIQASNASYYE---FATD---LSWGTVDRRFAE 316

Query: 95  IIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA--------TEKLRKEGQSFDLVAE 146
           ++G       IP        +E  L      +  +A           LR+E   + L  +
Sbjct: 317 MLGYSLDE--IPPVPERWDWWEQRLHPEDRERTLQAYHDFVQDLIPVLRQE---YRLRHK 371

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
             +    ++        +     ++ G+  ++ E     + L      F+V+ +++  ++
Sbjct: 372 DSSWRWWRVVSTTVKRNSQEYATAIAGLIFDITEQRQAEEALRESEERFRVMAETVPDII 431

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK---EEIKKRMISSSALEKNFC 263
           +     G   + N  + ++T        +  G    L     E++K R   S    + F 
Sbjct: 432 FTSRPDGSREYTNPRFYEHTR-LTPEAAEGSGWMAALHPDDLEQVKTRWRHSVETGELFE 490

Query: 264 ETVSTLE-HGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHT 308
                 + +G  + +  +   + N  G+     G   D+   + + + L  T
Sbjct: 491 AQYRLRDGNGRYRWFQGRAHPIRNETGQITKWFGACSDIHDLVHIQEALKET 542


>gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 715

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 152/391 (38%), Gaps = 23/391 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENR 473
           + + +  +  +        +      + + + V     +G     N  +        E  
Sbjct: 174 LQQQINERQHIVEILRESEERYRYLAEAIPQLVWTADANGECDYFNQNWCDYTGLNLEES 233

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L  G           R Y          A+  +    +++  G+   L    L     PL
Sbjct: 234 LGSGWLAALHLEDLERSYETWSKAVETGALYENEYRFKRAADGSYRWLLGRGL-----PL 288

Query: 534 PNAQTMLTFVNVT------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + Q  +     T            +  R              A+ IK+ F+  +S+ELR
Sbjct: 289 KDHQGRVVKWFGTCTDIHEQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELR 348

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+G++ LL+  KL    + Q+  +  I  ++T+ + L+ D+LD++ +  G + +N
Sbjct: 349 TPLNAILGWSKLLQERKLDPTRTFQA--LATIERNATLQVQLIEDLLDISRILQGKLVIN 406

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            + + L  ++    +++        I++       +G  + D  RL Q+   +LSNA+ F
Sbjct: 407 ITKVNLVTVILAALETMRLAAESKLIQVLTNFPPNIGQVMGDSARLQQVVWNLLSNAVKF 466

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +  G  + +   +  G     V + G  I  +    VF+ F        RR  G+GLGL+
Sbjct: 467 TPNGGKIEVTLDKMEGYAQIVVSDTGKGIQPEFLPYVFDYFRQADSSSTRRFGGLGLGLA 526

Query: 760 IVESFINLHGGHVSISS-SDEGVTTINCRIP 789
           IV   + +HGG V+  S  +E   +   R+P
Sbjct: 527 IVRKIVEIHGGTVTAQSLGEEQGASFTVRLP 557



 Score = 38.4 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 81/213 (38%), Gaps = 32/213 (15%)

Query: 119 LKFHHYIKLSKATEKLRKE-GQSFDLVAETQN-DCAIKIEGRVSGSCAFLRILSLDG--- 173
           L      +L +A + L+ E G+   + AE +     ++           +R   +     
Sbjct: 121 LLPSSA-QLERANKDLQNEIGERLKVEAELRKYQNHLE-------ELVTIRTNEITNANE 172

Query: 174 -IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            +  ++ E     + L      ++ L +++  LVW  D  G+  + N ++    +  G+ 
Sbjct: 173 KLQQQINERQHIVEILRESEERYRYLAEAIPQLVWTADANGECDYFNQNW---CDYTGLN 229

Query: 233 FQKAIGES--RKLFKEEIKK------RMISSSALEKNFCETVSTLEHGNNKSY--KIVRV 282
            ++++G      L  E++++      + + + AL +N          G+ +    + + +
Sbjct: 230 LEESLGSGWLAALHLEDLERSYETWSKAVETGALYENEY-RFKRAADGSYRWLLGRGLPL 288

Query: 283 LNSFGEA----GIAIDVSKEITVNDQLTHTYEI 311
            +  G      G   D+ ++  + ++     E+
Sbjct: 289 KDHQGRVVKWFGTCTDIHEQKQILEERARLLEL 321


>gi|327440461|dbj|BAK16826.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 938

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 166/375 (44%), Gaps = 20/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++ +  +     K+    ID  +EG+      G + L N A  ++ +     +      
Sbjct: 439 ERIFMYEEVERSRKLNQTIIDTTNEGIQFVSKYGEVLLLNKALFNIIRYPFEEIDDKVPQ 498

Query: 481 RNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSVL-EYSIIPLPNAQ 537
           +       +   ESD    F   AII  F + R       +     V  E     +    
Sbjct: 499 QLWLKHFQKIAEESDELVYFLKIAIIEEFTNTRTMRYSIQQDGRSPVFVEVYATSVFEGD 558

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +  + V   + +E           + D +K+  V  VS+ELR+PL++++GFT+LL   
Sbjct: 559 EKVGTMFVHRDITSE----------YEVDMMKSELVSTVSHELRTPLSSVLGFTELLLAK 608

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           ++     +Q +Y+E I   +  L NL+ND LD+  +++G    + + I L  L+ +V ++
Sbjct: 609 EIKP--ERQKKYIETIHKEAKRLTNLINDFLDIQRIESGQQVYSMNKISLTALIEDVLKN 666

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                  N   I+ + +       AD +R++Q+   ++ NA+ FS  G  +I++    N 
Sbjct: 667 FQIDPQHN---IRFVDESTNAIVSADEERIIQLLFNLIGNAIKFSPNGGEIIIRMQNINE 723

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               S+++ G  IPE    S+F +F  V N+ R +  G GLGL++ +  I+ H G + + 
Sbjct: 724 TVQVSIQDCGIGIPESAIPSLFQKFKRVDNSSRRKIGGTGLGLALSKEIISKHKGDIWLE 783

Query: 776 SSDEGVTTINCRIPS 790
           S +   TTI   +P 
Sbjct: 784 SEEGIGTTIFFTLPL 798


>gi|312889647|ref|ZP_07749196.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297869|gb|EFQ74989.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 656

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 120/668 (17%), Positives = 240/668 (35%), Gaps = 87/668 (13%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
           S  +S  + +F+ +D  ++  D    I   N + ++     G   ++ I ES  L   + 
Sbjct: 7   SQELSTLQSIFEGIDDAIFCHDLDMRITHWNPAAEQLF---GYSHEEIIDESVYLLIPQD 63

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-------------GEAGIAIDV 295
           +++      +                ++ + V +  S              G + IA  +
Sbjct: 64  RQQ-EKMDIMRDIMEGRRIGHFKTIRRTREGVEIPVSITISPIRDQEGQVTGSSQIARSI 122

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDE 354
            +E    ++      I+ +   AI        +   N    +++   +   +  + S   
Sbjct: 123 IEENAAEEKQARLAAIVASSDDAIVGKSLQGIITSWNIGAEKMFGYTEQEAIGQHISL-- 180

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----G 410
                      PE+LN +          K  +  +       GQ LH+ +T +P     G
Sbjct: 181 --------LIPPERLNEEDIIIGNIRAGKKVDHFQTIRRTKGGQQLHISLTVSPILNKAG 232

Query: 411 GTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGV-----------AVFGPDGRI 456
             I    +  N+T Q + E      ++   E ++ +S+ +            V     R+
Sbjct: 233 EIIGASKIARNITAQKEAERSVAKSMERM-EILNSISKSINEDLDLQHILQRVTDATTRL 291

Query: 457 KLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---- 511
             ++  AF      +         I          +       +F    +  D  R    
Sbjct: 292 TGADFGAFFYNRVDQGGESYWLYTISGAPRAAFENFPMPRNTAVFHPTFSGEDVVRVDDI 351

Query: 512 --------KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA------------ 551
                    S    +      V+ Y  +P+     ++         +A            
Sbjct: 352 TKDPRYGKNSPYFGMPKGHLPVVSYLAVPVITHSGVVIGGLFFGHKQAGIFKEEHEDLVV 411

Query: 552 ----ERALTEKNEALRKA----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
               + A+   N  L +        K+ F+   S+EL++PLT++ GF  +L+ +    + 
Sbjct: 412 TVASQAAVAIDNSRLFEEVKDLSNKKDEFIALASHELKTPLTSMSGFLQILERTVPDGI- 470

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                + E        L  LVND+ D++ + AG ++LN+    L+DLL+E+  +      
Sbjct: 471 --AKSFAEKALKQLAKLNELVNDLFDISKIQAGKLQLNFEPFDLSDLLDEITDTFEQTHP 528

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             N  +K+ +DG+L     D+ RL Q+ + +L NA+ ++     V + A R   +   SV
Sbjct: 529 HYN--LKMAADGELL-VSGDKMRLEQVLTNLLGNAVKYAPDAREVSMIAIRTGNEVRISV 585

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           K+ G  I  +  + +F++F        +  G+GLGL I +  I+ HGG + + S+     
Sbjct: 586 KDQGPGILPENQQHIFSQFYRVKEQERKTSGLGLGLYISKDIIDRHGGRIWVESTPGHGA 645

Query: 783 TINCRIPS 790
           T    +P+
Sbjct: 646 TFTFSLPA 653



 Score = 44.5 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 5/133 (3%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +++  +       + + + +     D RI   NPA   L+      +   +    I    
Sbjct: 5   QHSQELSTLQSIFEGIDDAIFCHDLDMRITHWNPAAEQLFGYSHEEIIDESVYLLIPQDR 64

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            +   +     +    I  F   R++ +G      +  +  +I P+ + +  +T  +   
Sbjct: 65  QQEKMDIMRDIMEGRRIGHFKTIRRTREGV-----EIPVSITISPIRDQEGQVTGSSQIA 119

Query: 548 SVRAERALTEKNE 560
               E    E+ +
Sbjct: 120 RSIIEENAAEEKQ 132


>gi|150016010|ref|YP_001308264.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902475|gb|ABR33308.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 568

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 163/396 (41%), Gaps = 39/396 (9%)

Query: 400 LHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGR 455
           +   + +N   GT+   F N+  Q+ +  K   ++  Q      +  +  GV        
Sbjct: 204 IRANINTNDELGTLGNSFNNMAEQLQI--KIREVIDNQNKIESILKSMESGVIAVDNCNM 261

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSL 514
           +   NP   SL   +          +NI   C    +    +D+   +      D+   +
Sbjct: 262 VISINPCAESLLGIK----------KNIVGEC--LLDHIKDYDIIKFLEQDDVSDKEIKI 309

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           +  +E          +  +     ++TF ++TD  R E               +++ FV 
Sbjct: 310 RHPIERDFKIKKSAMVDGMEGVGKVITFQDITDINRVEL--------------MRSQFVA 355

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+EL++PLT+I GF + LK       +  + ++++ I   +  L  L+NDIL L+ ++
Sbjct: 356 NVSHELKTPLTSIKGFAETLK---FVKDDETREKFLDIIDKEAERLSRLINDILVLSNIE 412

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +  + ++        ++ EV   +       NI+++   D        DR +  Q+   +
Sbjct: 413 SN-LAVDMHEFEPGSVIEEVINIMRKTAINKNIKLEFK-DNNSEKIFGDRDKFHQLALNL 470

Query: 695 LSNAMDFSSK-GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           + NA+ +S      V + +  ++  +   VK+NG  IP++    +F RF       ++ G
Sbjct: 471 IENAIKYSKDTSGKVEVLSYNEDKYYCLRVKDNGIGIPKEDISRIFERFYRVDKSRKKGG 530

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+IV+  + +  G + + S     T    +IP
Sbjct: 531 TGLGLAIVKHIVKIFNGEIYVKSELGVGTCFEVKIP 566


>gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
 gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
          Length = 1316

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 10/248 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  +A  AL E  +A   A+  K++F+ ++S+E+R+P+  I+G   L+K +    L++KQ
Sbjct: 685 DLEKANTALEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQTH---LSAKQ 741

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y++ +  S+  LLN++NDILD + +++G ++L  +   +   +  V + +  +  +  
Sbjct: 742 ANYMDKVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAELLGLEAQQKG 801

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNGDFIF 721
           I +    D      FV D  RL Q+   ++ NA+ F+  G   V  +         + IF
Sbjct: 802 IVLNFDLDLNAPERFVGDAMRLRQVLINLVGNAIKFTEHGHIQVTQRLTQWVEAQAECIF 861

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  I     + +F  F        R   G GLGL+I +  + + GG + + S+  
Sbjct: 862 EVEDTGPGIAPGQQELLFQAFSQADASTTREFGGTGLGLAISKRLVEMMGGEIGLQSTPG 921

Query: 780 GVTTINCR 787
             +    R
Sbjct: 922 QGSRFTFR 929



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 70/552 (12%), Positives = 159/552 (28%), Gaps = 80/552 (14%)

Query: 60  SFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWL 119
             L+  C + S+   L+ ++    I     + +   + Q    +   Q   D        
Sbjct: 10  RRLARHCAEASRAPFLVLDHTLCII---AANTSAAALLQTSADLLPGQKLPDF------- 59

Query: 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRV-SGSCAFLRILSLDGIYSEL 178
                 +      KL      F +  + + D  I    R+ +G     R+L++       
Sbjct: 60  ----AGQGQPWLAKLCAHLHRFPVFTDLELDRGITANSRLFAGDTETPRLLAVGLDLPSS 115

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
                +    + H   ++ L  +   L+      G   + N ++++          +   
Sbjct: 116 HPLPGRDTTDAEH--RYQTLVTNAPLLIQSVGPDGLFQFVNPAWEETLGYSQDEALQMFF 173

Query: 239 ES--RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN------KSYKIVRVLNSFGEAG 290
           E       +   + R        +     V  L             +  ++        G
Sbjct: 174 EDIIAPEHRSHCRNRFQGLLQGREFRDIRVPMLTKAGRIIQTEAHLFPRLQNGEVIATQG 233

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA---FLA 347
           I  D+++ +    +     + L +               F   +   ++ +D      L 
Sbjct: 234 IFQDITERLQAEKRELAAQQRLRD---------------FFQLAPAVIYRLDPDSWQVLD 278

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
             P   ELL +      + E L    W++++    K +    +      G   H     +
Sbjct: 279 VTPYVSELLGY-----TIQETLAPSWWRDHLHPEDKHAAFEANADLFATGSVAHEYRIRH 333

Query: 408 PRGGTIWMFE--------------------NLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            +G  +W+ +                    N++ +  LE +            ++    +
Sbjct: 334 KKGHWVWVQDRIKLIRDNQGQPQEIIGAWLNISERRALEIQLQESEARYRNIFNNHHTVM 393

Query: 448 AVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            +  P +G+I+ +NPA  + +  +   L     +  I     R   E +  +      T 
Sbjct: 394 FIIDPANGQIEDANPAAETFYGWDRATLLSMN-VAEINTLTEREVQE-EMQNARRQRRTY 451

Query: 507 FDDERKSLQGTLELLS---------DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           F+ + +   G++  +             L YSI+     +                  T 
Sbjct: 452 FEFQHRRADGSVRFVEVYSGPVHLYGRNLLYSIVHDATERVQARDEIWRQKNLLASINTI 511

Query: 558 KNEALRKADEIK 569
            ++AL    E K
Sbjct: 512 LHDALYCDTEAK 523



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 109/381 (28%), Gaps = 26/381 (6%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
           +   + +   ++        D    I+ AN S     +T   +     G+    F  + +
Sbjct: 8   SERRLARHCAEASRAPFLVLDHTLCIIAANTSAAALLQTSADLLP---GQKLPDFAGQGQ 64

Query: 250 KRMISSSALEKNFCE----TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKE---ITVN 302
             +    A    F       +      N++ +            G+ +  S         
Sbjct: 65  PWLAKLCAHLHRFPVFTDLELDRGITANSRLFAGDTETPRLLAVGLDLPSSHPLPGRDTT 124

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           D       ++ N  + I     +   QF N +    WE  L +     S DE L+     
Sbjct: 125 DAEHRYQTLVTNAPLLIQSVGPDGLFQFVNPA----WEETLGY-----SQDEALQMFFED 175

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMF 416
              PE  +    +       +     +       G+ +       PR        T  +F
Sbjct: 176 IIAPEHRSHCRNRFQGLLQGREFRDIRVPMLTKAGRIIQTEAHLFPRLQNGEVIATQGIF 235

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLS 475
           +++T ++  E +     +   +        +    PD  ++    P    L         
Sbjct: 236 QDITERLQAEKRELAAQQRLRDFFQLAPAVIYRLDPDSWQVLDVTPYVSELLGYTIQETL 295

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             +  R+      ++       DLFA    + +   +  +G    + D +          
Sbjct: 296 APSWWRDHLHPEDKHAAFEANADLFATGSVAHEYRIRHKKGHWVWVQDRIKLIRDNQGQP 355

Query: 536 AQTMLTFVNVTDSVRAERALT 556
            + +  ++N+++    E  L 
Sbjct: 356 QEIIGAWLNISERRALEIQLQ 376


>gi|219851553|ref|YP_002465985.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
            palustris E1-9c]
 gi|219545812|gb|ACL16262.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
            palustris E1-9c]
          Length = 1267

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 106/525 (20%), Positives = 214/525 (40%), Gaps = 55/525 (10%)

Query: 295  VSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSF--------VELWEID 342
            + +  T+  +L  T + L NL       I ++D    +   N +F         ++    
Sbjct: 768  IDELTTMEHELRETGQYLENLIQYANAPIIVWDPAFRITRFNHAFELLIGRKAADVIGQP 827

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-----NG 397
            L  L      + +LE +R  N        +     I  ++++ E     W+       +G
Sbjct: 828  LELLFPKKFAEPVLEIIRKTNDGE-----RMEVVEIPILHQNGEVRTVLWNSAAIFGADG 882

Query: 398  QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV----FGPD 453
            +T+           TI   +++T +   E       +      + L+EG  +    F  D
Sbjct: 883  ETVQ---------STIAQGQDITKRKWAEEALRQSEEQYRMLFNTLTEGFCIIEMLFDAD 933

Query: 454  -----GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                  R    NPAF       E   + G  +R++A     ++ E  G          F+
Sbjct: 934  ERPIDYRFLEINPAFERQTGLHE---AQGRLMRDLAPNHEEHWFEIYGTIALTGEPVRFE 990

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +E K+L    E+ +     Y +    + +  + F ++T+  +AE  L    + L+ +++ 
Sbjct: 991  NEAKALNRWYEVSA-----YRVGGPESRRVAILFNDITERKQAEEVLKTIADNLKASNQE 1045

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
               F    S++L+ PL  +  F+ +L+    G L++   +++ YI   +  +  L+ND+L
Sbjct: 1046 LEQFAYIASHDLKEPLRMVTCFSQILERQYKGQLDADADEFIGYIVDGALRMEALINDLL 1105

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
              + ++ G+  +    + +   + E   ++   + E N RI     G + S   D  +++
Sbjct: 1106 LYSRINQGMRPVER--VDMKHAIEEAISNLIIPIRERNARIT---RGAMPSIQGDLSQMV 1160

Query: 689  QIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            Q+F  ++ NAM +  +     + + A R    + FSVK+NG  I     + +F  F    
Sbjct: 1161 QLFQNLIGNAMKYCPEEREPEIWINAERTGKGWTFSVKDNGLGIDPAYHEQIFMIFRRLH 1220

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +  G G+GL++V+  +  HGG + + S +   +T    IP K
Sbjct: 1221 TKAEYPGTGIGLAVVKRIVERHGGRIWVESEEGSGSTFLFTIPEK 1265



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 74/497 (14%), Positives = 140/497 (28%), Gaps = 87/497 (17%)

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           EG +S     +       + + +     +   L       + +  +    +W       I
Sbjct: 299 EGMISAEKVRVLEQVAYALGASIVRVQTEEA-LRKQEKTAQAILAAAKESIWLFGTDDTI 357

Query: 216 LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH---G 272
           L AN +        G    + IG     F      +   +   E          E    G
Sbjct: 358 LMANPT--ALVRLGGKDTGEVIGHQYSEFMTSELAQARRARIEEVISSRRSVQFEDIRAG 415

Query: 273 NNKSYKIVRVLNSFGE----AGIAIDVS-------------------------------- 296
               +    V +  G     A  + D++                                
Sbjct: 416 TIFIHTFCPVFDEAGAVSSIAAFSRDITGIRQADEELLKKNEGLHILNEELTATQEELRQ 475

Query: 297 ---KEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
              +  T+  +L  T + L NL       I ++D    +   N +F  L     A +   
Sbjct: 476 SIDELTTMEHELRETGQYLENLIQYANAPIIVWDPAFRITRFNHAFELLIGRKAADVIGQ 535

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           P      +          ++  KT +     V +    H+      NG+   V+  S   
Sbjct: 536 PLELLFPKKFAEPVL---EIIRKTTRGERMEVVEIPILHQ------NGEIRTVLWNSAAI 586

Query: 410 GG--------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            G        TI   +++T +   E   +         I++    V  F    R+   + 
Sbjct: 587 FGSDGETVLSTIAQGQDITERKRTEEALHEAHLRLTHHIENSPLAVVEFDAQFRVTRWSD 646

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               ++      +  G  I  I      Y  + D     +A + +    R          
Sbjct: 647 EAEKVFGWTMAEV-MGRTIDEIPWV---YEEDVDRVASISADMMNGKAPRNKHTNRNYRK 702

Query: 522 SDSVL--EYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKN---- 570
             +V+  E+    L +        +   ++VT+  RAE  L EKN+ L + +E       
Sbjct: 703 DGAVITCEWYNSALRDETGELVSILSQVLDVTERDRAEADLLEKNQELSELNEELTATQE 762

Query: 571 ------SFVQHVSYELR 581
                   +  + +ELR
Sbjct: 763 ELRQSIDELTTMEHELR 779



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/571 (12%), Positives = 169/571 (29%), Gaps = 118/571 (20%)

Query: 34  LLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP 93
           +   +   I+ ++   +L K+     + L+   + +     L   ++ + +         
Sbjct: 313 VAYALGASIVRVQTEEALRKQEKTAQAILAAAKESI----WLFGTDDTILMA--NPTALV 366

Query: 94  EIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153
            + G+    +   Q          ++            E++    +S  +  E      I
Sbjct: 367 RLGGKDTGEVIGHQY-------SEFMTSELAQARRARIEEVISSRRS--VQFEDIRAGTI 417

Query: 154 KIE---------GRVSGSCAFLRILSLDGIYS-----------------ELAETTLKCKK 187
            I          G VS   AF R   + GI                   EL  T  + ++
Sbjct: 418 FIHTFCPVFDEAGAVSSIAAFSR--DITGIRQADEELLKKNEGLHILNEELTATQEELRQ 475

Query: 188 LSNHISV-----------FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
             + ++             + L    +  +   D A  I   N +++      G      
Sbjct: 476 SIDELTTMEHELRETGQYLENLIQYANAPIIVWDPAFRITRFNHAFELLI---GRKAADV 532

Query: 237 IGESRKL-----FKEEIKKRMISSSALEKNFCETVSTL-EHGNNKS--YKIVRVLNSFGE 288
           IG+  +L     F E + + +  ++  E+     +  L ++G  ++  +    +  S GE
Sbjct: 533 IGQPLELLFPKKFAEPVLEIIRKTTRGERMEVVEIPILHQNGEIRTVLWNSAAIFGSDGE 592

Query: 289 -----AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
                     D+++    E  +++        + N  +A+  FD    +   +    +++
Sbjct: 593 TVLSTIAQGQDITERKRTEEALHEAHLRLTHHIENSPLAVVEFDAQFRVTRWSDEAEKVF 652

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPE----------------QLNWKTWKENIFSVYK 383
              +A +     ++    +    +++                    N++     I   + 
Sbjct: 653 GWTMAEVMGRTIDEIPWVYEEDVDRVASISADMMNGKAPRNKHTNRNYRKDGAVITCEWY 712

Query: 384 SSETHKDTWHLPN--GQTLHVIVTSNPRGGTIWMFENLTVQVD----------------- 424
           +S    +T  L +   Q L V          +   + L+   +                 
Sbjct: 713 NSALRDETGELVSILSQVLDVTERDRAEADLLEKNQELSELNEELTATQEELRQSIDELT 772

Query: 425 -LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +E +     +     I + +  + V+ P  RI   N AF  L   +   +        I
Sbjct: 773 TMEHELRETGQYLENLIQYANAPIIVWDPAFRITRFNHAFELLIGRKAADV--------I 824

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSL 514
                  + +     +   I  + D ER  +
Sbjct: 825 GQPLELLFPKKFAEPVLEIIRKTNDGERMEV 855


>gi|157373431|ref|YP_001472031.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157315805|gb|ABV34903.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 931

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 164/389 (42%), Gaps = 46/389 (11%)

Query: 430 NTLVKVQGETIDHLSEGVAV----FGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIA 484
              V+     I +++  + V       D +I+  N  + + L K  E  L+         
Sbjct: 253 KAEVEKSHRYIKNMASALPVHLLYVDIDKKIQFINQYSLQWLAKPMEEVLTQ-------- 304

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTML 540
            TC +         +   I T+   +  +L        +  L + I  +P+     +   
Sbjct: 305 -TCRQVLPSQLFSLIERPIETALQGDSITLDAEF-FHKNMSLFFHITHIPDIDNEGRIKG 362

Query: 541 TFVNVTDSVRAER-----------------ALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            F+ + D  +                    AL +  E    A + K+ F+  +S+E+R+P
Sbjct: 363 IFICIEDRTQTRDNEKKIEKYAHQLEMNNLALDDARETAEAAAQSKSEFLACMSHEIRTP 422

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  ++G   LL+ +   +L+  Q  +++    S+  LL L+NDILD + +++G   +   
Sbjct: 423 MNGVLGMLTLLERT---ALDQSQRNHLDTAQGSARNLLGLINDILDFSKIESGKFPIESV 479

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L +LLNE  + +A +  E  I +   I+D    SF  D  R+ Q+ + ++ NA+ F+
Sbjct: 480 NFSLTNLLNETIRPLAIRAQEKGIELVSDITDITSQSFKGDPTRISQVLTNLIGNAIKFT 539

Query: 703 SKGSTVILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            KGS + +   +++       FSV++ G  +  +  + +F  F        R   G GLG
Sbjct: 540 EKGS-ITVYVKQNDDIEPRLNFSVEDTGIGLASNQLEKLFQPFTQADSSTTRHFGGTGLG 598

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINC 786
           LSI +    L GG +S+ S++   +  + 
Sbjct: 599 LSIAKRLTELMGGSISVVSTEGKGSKFSF 627


>gi|28899864|ref|NP_799519.1| putative two-component sensor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260880452|ref|ZP_05892807.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|28808147|dbj|BAC61352.1| putative two-component sensor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308092209|gb|EFO41904.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
          Length = 632

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 24/300 (8%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--------------VRAERALTE 557
           + L   L+LLS +V ++S    P+  T+       +                  +  L  
Sbjct: 173 RLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEA 232

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +    A+  K+ F+  +S+E+R+P+  IIG   LL  +K   L+ +Q ++VE I  SS
Sbjct: 233 ERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTK---LDPQQKEFVEIIDNSS 289

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ +++DILD + V+AG ++L   T     LL++V      K  + N+++    D KL
Sbjct: 290 QSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKL 349

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPE 732
                 D  RL Q+ + +LSNA+ F+ +G   +L +  +         F V ++G  I +
Sbjct: 350 PAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAK 409

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  ++VF RF        R   G GLGL+I    +++ GG + ++S     +  +  IP 
Sbjct: 410 EHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTSELGLGSCFDFTIPL 469


>gi|326387091|ref|ZP_08208701.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208272|gb|EGD59079.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 1172

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 118/675 (17%), Positives = 243/675 (36%), Gaps = 54/675 (8%)

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
             + ++G +   C  L +L +  +  E          LS +   F+ L  S    +    
Sbjct: 250 RIMLVQGFI--GCCALTVLPIAAVLGERNRL---VHALSANERRFRELSQSAPIGIVTIG 304

Query: 211 QAGDILWANISYKKNTETEGI-VFQKAIGESRKLFKEEIKKRMISSSALEKNFCET--VS 267
               I +AN    +        +  + +GE+          + + S   E +F E     
Sbjct: 305 LDHAITYANPEMARIAGRSAEQLCTEKVGENLGEDLARTLDQTLESCTSETDFAEVSFAL 364

Query: 268 TLEHGNNKSY------KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA--- 318
             +    + +      ++       G  G  +DV++      +L  +   L  L      
Sbjct: 365 ARDGDGQRWFQTRFAPRLDEQRRLLGWIGTVMDVTQLRRSEQRLAQSERELRLLADNSGD 424

Query: 319 -IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            I  F  +  + + + +   +       L       +LL F+   +    +   +T+ ++
Sbjct: 425 VICSFGPSGVILYASAATERMLGCSARDLVGR----DLLSFVDGDDV---EHVRQTFADS 477

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVT--SNPRGGT----IWMFENLTVQVDLETKYNT 431
             S  +  ET    W LP+G+ L V  +  ++  G T    +    +++ +   E +   
Sbjct: 478 --SSGRHGETCGFRWVLPDGERLWVEASFGASGEGATPGPLVATIRDISERQMAEAEILE 535

Query: 432 LVKVQGET------IDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                 ET       ++L+E G   +   G     +P+F  +     +R+          
Sbjct: 536 KNARLRETNRLMSLAENLAEFGHWHYDLVGGASDWSPSFMDIHGLMPDRVPNIEAYFATI 595

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----M 539
               R    +   D+F   + +    R++ +          +E       +A        
Sbjct: 596 VPEQR----ASVRDVFEDAMRTGRAFRRATRIVRPDGQIRTVEVQGQGEIDAHGNLAGIF 651

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT--S 597
               ++T  +  ++ L+   +    A E +  ++  +S+E+R+P+T ++   +LL    +
Sbjct: 652 GVCQDITVELEVQQELSRARDRAEAAAEERARYLAVMSHEIRTPMTGVLATYELLAQYGN 711

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +        + +    A +  L+++++D+LD A  +AG + L        + L      
Sbjct: 712 DIPWPQPDIPRLISATQAHAKTLMSILDDVLDQAKGEAGKLDLELVAFNPGEALAGAVDL 771

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              +     I ++  ++  +   V D  R  QI S +LSNA+ F+S+G         D  
Sbjct: 772 FRGQAAAKGIALECHAEA-MPDVVGDPARFHQIVSNLLSNAIKFTSQGKVSASCEQLDGA 830

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
            +   V + G  I  D    +F  F        RR  G GLGL+IV S +   GG +++ 
Sbjct: 831 FYEVCVSDTGIGIAADALDRIFEPFAQADTTTSRRFGGTGLGLAIVRSLVTSMGGELTLD 890

Query: 776 SSDEGVTTINCRIPS 790
           S     +T   R+P 
Sbjct: 891 SVPSRGSTFTVRLPL 905


>gi|322383664|ref|ZP_08057415.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151876|gb|EFX44819.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 425

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 128/260 (49%), Gaps = 4/260 (1%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + L N  T     +  +       L    + ++K D++KN F+  +S+ELR+PLT+I G+
Sbjct: 166 MALGNFDTKAEKHHEDEVGHLADTLNFMADEIQKNDKLKNEFISSISHELRTPLTSIKGW 225

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           ++ L + +      +    +  IS  +  L+ LV D+LD + + +G +K++   + LN L
Sbjct: 226 SETLVSGEFQD-PEETRLGINIISKETDRLIGLVEDLLDFSKLQSGNLKISMIKLKLNPL 284

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+            IR++V ++ +    + D  R+ QI    + NAM F+ +G  + +
Sbjct: 285 VKEIGAQFGASCARKQIRLEVQAEEEPIHIMGDGNRIKQILINSIDNAMKFTPQGGVITV 344

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
              ++  + + +V++ G  IP ++ K V  +F        R+G GLGLSI +    L GG
Sbjct: 345 SLKQEGKEALITVQDTGEGIPPEILKHVTEKFFKG---TSRQGNGLGLSICKELTELQGG 401

Query: 771 HVSISSSDEGVTTINCRIPS 790
            ++I S     TTI  R P 
Sbjct: 402 KMTIESVFGEGTTITIRFPL 421


>gi|310827685|ref|YP_003960042.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
 gi|308739419|gb|ADO37079.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
          Length = 856

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 10/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + +R L  + E   +A + K+ F+  +S+E+R+P+  I+G T++    +     ++    
Sbjct: 323 QIQRLLMAEKEKAERASQAKSDFLSQMSHEIRTPMNGIVGMTEV--GRRYTHNPARIENC 380

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ IS S+  LL+LVNDILD++ +++G ++L+  +     L   +     T+  E  I  
Sbjct: 381 LDKISLSTQHLLSLVNDILDMSKIESGKIELHEESFDFGQLFKALTTVFYTQARERGIEY 440

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSV 723
            V  +G L    V D  RL QI + +LSNAM F+ KG  V      ++   D     F V
Sbjct: 441 NVYVNGALEDELVGDALRLNQILTNLLSNAMKFTPKGGKVCMTAEEIRRGEDRFWIGFEV 500

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  I ++    +F  F         +  G GLGL I + F+ + GG +S+ S     
Sbjct: 501 RDSGCGIAKENLGRIFEVFTQEDSGVARKYGGTGLGLPITKRFVEMMGGSISVESQVGSG 560

Query: 782 TTINCRIPSK 791
           +     IP K
Sbjct: 561 SCFRVEIPFK 570


>gi|258593750|emb|CBE70091.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 627

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 119/257 (46%), Gaps = 19/257 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L   N  L  A   K+ F+ H+S+ELR+PL  I+GF++LL+   +GSLN +Q++++ +
Sbjct: 360 RELRAVNAQLEAASRHKSEFLTHMSHELRTPLNAILGFSELLRNPAIGSLNEQQARHLTH 419

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I A    LL + ND+LDLA V+AG ++L+     ++  +      I     + ++ + + 
Sbjct: 420 IQAGGKHLLVITNDLLDLAKVEAGKLQLHPEPFDIDKAILAALADIRPLADQKHLTLTLH 479

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----------------RDN 716
           +D  L    AD  R  QI   +LSNA+ F+ +G  + + A                    
Sbjct: 480 ADTALVPLTADPLRFKQIIYNLLSNAIKFTPEGGRITVTAHIGSSEGARLNPIPDTLYPG 539

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
                +V + G  I  +    +F  F         Q  G GLGL++ +  + LHGG +  
Sbjct: 540 EFVEIAVADTGIGITAENLSRLFQPFTQLDPTLAKQYHGTGLGLALTKQLVELHGGRIWA 599

Query: 775 SSSDEG-VTTINCRIPS 790
           +S   G  +      P 
Sbjct: 600 ASDGAGCGSCFTICFPL 616


>gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 1236

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 156/386 (40%), Gaps = 32/386 (8%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT------------HI 480
            +     ++H+ + V      G+I   NP    L+    + +                HI
Sbjct: 415 EEEMRSVVEHMVDCVVTTDEIGKILSVNPVMEKLFGYSHDEMIGQNVSIIVPEPDRSKHI 474

Query: 481 RNIAATCSRYYNESDGWDLF----AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             +   C   + +      +      I    + E     G    +  +V EY +      
Sbjct: 475 SYMENYCRTGHGQEYVGRPYLSGSHGIGRGREVEGIRKNGERIEIYLAVSEYYVG--EER 532

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  ++ + VR    L +      +A++ K++F+  +S+E+R+P+  +IG  D+L+ 
Sbjct: 533 HFTGVMRDIREHVRIMNDLQQARIEAEQANKAKSAFLAAMSHEIRTPMNGVIGMIDVLRQ 592

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   SL   Q +    I  S+  LL+++ DILD + ++AG +++    + L +++     
Sbjct: 593 T---SLTGYQMEMANLIRDSAYSLLSIIEDILDFSKIEAGKLEIEKIPMSLANIVENACG 649

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS---SKGSTVILKA 712
            +A       + + +  D ++    + D  RL QI   I++NA+ FS    K   V ++ 
Sbjct: 650 MLAHVALSKKVELTLFIDPEIPENMLGDPLRLRQILVNIINNAIKFSSKQEKQGKVSVRV 709

Query: 713 ARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
                +       F + +NG  + ++  + +F  F        RR  G GLGL+I     
Sbjct: 710 LLTESNPDQVVVTFQITDNGIGMNKETQEKLFKSFSQGDPSTTRRFGGTGLGLAISHHLA 769

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L    +++ S+ +  +T   ++P K
Sbjct: 770 ELMDAEITVQSAPQHGSTFIIQMPFK 795


>gi|237713937|ref|ZP_04544418.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409155|ref|ZP_06085699.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647480|ref|ZP_06725063.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294806519|ref|ZP_06765359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446093|gb|EEO51884.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352902|gb|EEZ01998.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637190|gb|EFF55625.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294446277|gb|EFG14904.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295085278|emb|CBK66801.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 391

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 184/382 (48%), Gaps = 23/382 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K      + G  + ++   + +   D ++  +N   ++  +        G  ++   A 
Sbjct: 10  RKLERTSHIAGAVLKNVHAFILLIDNDFKVLKTNYYQKTGTRKGTEEKRVGDLLQCRNAL 69

Query: 487 CSRY----YNESDGWDLFAAIITSFDDER--KSLQGTLELLS--------DSVLEYSIIP 532
            +      ++      +  AI  +F+  R    L+ TL +++        D+V+  S   
Sbjct: 70  AAEGGCGTHSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGSYFL 129

Query: 533 LPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           L   + M +T  +VT   +AE  L    E   KAD  K++F+ ++S+E+R+PL  I GF 
Sbjct: 130 LNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFA 189

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L      +   +++QY E I  ++ +L+ LVNDILD++ ++AG ++   +T+ +N LL
Sbjct: 190 EVL---GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLLL 246

Query: 652 NEVKQSIATKMHENNIRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++++Q    +++E    I++I++          DR R+ Q+ S    NA+ F+ +GS + 
Sbjct: 247 SDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS-IR 305

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           +     + +  F VK+ G+ IP +    VF RFV       ++G GLGLSI ++ +   G
Sbjct: 306 IGYEARDTELYFYVKDTGAGIPAEKLPDVFERFVKL--NKDKKGAGLGLSISQTIVAKLG 363

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +   S +   +T    IP +
Sbjct: 364 GQIGADSVEGEGSTFWFTIPYR 385


>gi|256829874|ref|YP_003158602.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579050|gb|ACU90186.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 678

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 154/381 (40%), Gaps = 31/381 (8%)

Query: 420 TVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T ++     +           +  L   V V    GRI   N AF +L       L  G 
Sbjct: 177 TAELQATRDRLEEQHAFLSSLLSSLPNPVFVQDIHGRILRCNDAFSALVGKSGQELV-GE 235

Query: 479 HIRNIAA--TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           H   +          NE  G D F         E ++  G +  +  S   +       A
Sbjct: 236 HESRLRDSFVLEPAKNEGLGPDEF---------ECRAADGCMRRMLSSCAPFHTSQGQLA 286

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +V+D       L     A   +   K+ F+ ++S+E+R+PL  I+G   LL  
Sbjct: 287 GFINVLTDVSD-------LAAARRAAEASSRAKSEFLANMSHEVRTPLNGIVGMLQLLSH 339

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L+++Q ++V     SS  L  L+ DIL+++ ++AG + +        DL + V+ 
Sbjct: 340 TY---LDAEQKEFVFTAIRSSKRLTQLLTDILEISRIEAGKLDVVAQEFHFVDLRDSVRD 396

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                     + +    D  +    V D  RL QI   ++ NA  F+ +GS V + A R 
Sbjct: 397 LFVIPAKAKGLELSFEIDEAIPSHVVGDEGRLRQILFNLVGNATKFTPRGS-VQVTARRL 455

Query: 716 NG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
           +        F+V++ G  IP +  + +FN F         Q  GVGLGL+IV   +++  
Sbjct: 456 DQGGQMHVEFTVQDTGVGIPRERQEDIFNAFTQVDGSAVRQHGGVGLGLAIVRRLVDMMD 515

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +++ S     TT+  R+P 
Sbjct: 516 GTITVQSEPGHGTTMTVRVPL 536



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R L L  +    AE      +L    +    L  SL   V+ +D  G IL  N ++    
Sbjct: 167 RDLEL-AVRERTAELQATRDRLEEQHAFLSSLLSSLPNPVFVQDIHGRILRCNDAFSALV 225

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
              G   Q+ +GE     ++        +  L  +  E  + 
Sbjct: 226 ---GKSGQELVGEHESRLRDSFVLEPAKNEGLGPDEFECRAA 264


>gi|253568196|ref|ZP_04845607.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
 gi|251842269|gb|EES70349.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
          Length = 499

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 107/513 (20%), Positives = 211/513 (41%), Gaps = 39/513 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLE 357
           +  N Q  +  E+L+ L   + IF+ N  +   N   +    +  +     P S ++L +
Sbjct: 1   MEENKQTLYNDELLNILPDGVIIFNINGEVIQLNHQALTELHVHSSVNEMMPLSTNDLFK 60

Query: 358 FLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLH--VIVTSNPRGG--- 411
            L +             KE+I SV  +     + T+ LP    +   +  T  P  G   
Sbjct: 61  LLNN-------------KEDILSVILEKIRQGEQTYSLPEHTFMQEQIDYTQFPIRGDFA 107

Query: 412 ----------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSN 460
                      ++ F N+TV++  E   NT ++       +     + F  D R  +   
Sbjct: 108 TIKEEGHLKKILFFFRNITVELTQEYILNTALQRTKIYPWYYDINRSEFTLDNRYFEHLG 167

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            +                H  +  A    +  +  G + F   +  F   R    GT E 
Sbjct: 168 ISAGENNTLTMEEYVNMIHPDDRQAMADAFIVQLSGMETFDKSV-PFRLHRG--DGTWEW 224

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                   + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S+E+
Sbjct: 225 FEGQSTYIANISGHPYRLVGICMSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEI 284

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++D+LDL+ +++  +K 
Sbjct: 285 RTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKF 344

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            ++   L  L+ +V++   T    + I I+     +      D  RL Q+ S  ++NA  
Sbjct: 345 TFTDCSLRSLMIDVEKE-QTMKPISEIEIRASLPNEDVYINTDATRLKQVISNFINNARK 403

Query: 701 FSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           F+ KG      A  + D       V++ GS IP++  K +F+RF        ++G GLGL
Sbjct: 404 FTEKGYIHFGYAVDSVDASSVHVFVEDTGSGIPKECQKEIFDRFYKVDTF--KQGTGLGL 461

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SI ++ +    G + + S     +     +P +
Sbjct: 462 SICKTIVEHLQGDIFVESETGKGSRFTVTLPFE 494


>gi|268317957|ref|YP_003291676.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335491|gb|ACY49288.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 628

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 113/629 (17%), Positives = 231/629 (36%), Gaps = 60/629 (9%)

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES-RKLFKE------EIKKR 251
              L       D+       N  +     T  +   + +G +  +LF+E      +  +R
Sbjct: 11  LQHLPVAAALIDETLRYRAVNARW---CRTFALAADEVVGRAHAELFEEDGGYWTQALRR 67

Query: 252 MISSSALEKN--FCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
           ++  + +E      +             +   +    G   +  D ++     + L  + 
Sbjct: 68  VLQGAVVEGEEMLLKRRDGPAFWVRWWGQTCSLGQQRGVILVFEDQTEMHRTREALEASR 127

Query: 310 EILHN-LT---VAIAI----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL-- 359
            +L   L+     I +    +  +  +             D  +L  NP    LL     
Sbjct: 128 RLLTRVLSCSLEGIMVLRPVYQPDGEVA------------DFVWLLANPRAHALLRQSEL 175

Query: 360 ---RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---NGQTLHVIVTSNPRGGTI 413
              R    LPE +    + E    V +  E  + T+ L        L +  T    G   
Sbjct: 176 EGRRLREVLPEAM-LPGFFEACVQVVQRGEPLRRTFCLKQTDRSLWLEMAATRLDEG-VA 233

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +F ++T   + E K     ++     +++++ VA+   +GRI   +P+   +       
Sbjct: 234 VIFRDVTEAREAEAKLREREQLFRLLAENMTDLVALHDAEGRIVYVSPSAERIVGYTPEE 293

Query: 474 LSPGTHIRNIAATCSRY----YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           L  G  +        R       E  G +    ++      R+     LE    ++ + +
Sbjct: 294 L-IGHRLEEFWHPEDRKRLPTLPEQAGEEDHPGVLVYRFRHRQGGYRWLETHVRAIRDET 352

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
              +   Q   +  +VTD V AE+AL   NE L++ +     F    S++L+ PL  +  
Sbjct: 353 GRLV---QLQTSSRDVTDRVEAEQALARSNETLQQRNRELQDFAYIASHDLQEPLRKVRA 409

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F +LLK      L+ +   Y++ +  ++  +  L+ D+L  + V        +  + L+ 
Sbjct: 410 FAELLKEEYESVLDDEGRYYLDRMQDAAQRMSRLIEDLLTFSRVTTQGRP--FERVDLHA 467

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-- 707
           +L +V   +  ++ E + ++ V  +G      AD  ++ Q+   ++ NA+ F     T  
Sbjct: 468 ILEQVLADLEVRIAETDAQVHV--EGHWPVVEADPTQMRQLLQNLIGNALKFHHPERTPE 525

Query: 708 VILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           V L+A  +        +  V++NG    E     +F+ F     RG+  G G+GL+I   
Sbjct: 526 VWLRARLEETPAGTQCVIEVQDNGIGFDEKYLDRIFSPFQRLHGRGRYAGTGMGLAICRR 585

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +  H G ++  S  +   T   ++P  +
Sbjct: 586 IVERHHGQLTARSRPDEGATFIVQLPLMQ 614



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 15/151 (9%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            ++ E      KL     +F++L +++  LV   D  G I++ + S ++     G   ++
Sbjct: 237 RDVTEAREAEAKLREREQLFRLLAENMTDLVALHDAEGRIVYVSPSAERIV---GYTPEE 293

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNNKSYK--IVRVLNSFG 287
            IG   + F     ++ + +   +    +    L        G  +  +  +  + +  G
Sbjct: 294 LIGHRLEEFWHPEDRKRLPTLPEQAGEEDHPGVLVYRFRHRQGGYRWLETHVRAIRDETG 353

Query: 288 E----AGIAIDVSKEITVNDQLTHTYEILHN 314
                   + DV+  +     L  + E L  
Sbjct: 354 RLVQLQTSSRDVTDRVEAEQALARSNETLQQ 384


>gi|182682436|ref|YP_001830596.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa M23]
 gi|182632546|gb|ACB93322.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa M23]
          Length = 558

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 181/468 (38%), Gaps = 44/468 (9%)

Query: 351 SNDELLEFLRSANKLPE------QLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVI 403
           +N      LR  + + E        +   + +    V  S +  H +   L    ++ V+
Sbjct: 77  TNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARALRRWYSVEVM 136

Query: 404 VTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               P G  +  +F ++T    +E +            D L   V VF   G ++  N A
Sbjct: 137 RVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTA 196

Query: 463 FRSLWKTEE-----NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +   +  +         S   H  ++     +            A++ +     +   G 
Sbjct: 197 YGEFFGVDLSSGTLPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA-----RRYDG- 250

Query: 518 LELLSDSVLEYSIIPL--PNAQTMLTFVNVTD-SVRAERAL---------TEKNEALRKA 565
                   +E S  P   P+   +    +  D + R E  L                   
Sbjct: 251 ----QWRWIEMSATPRYSPDGHFIGLTGSSQDVTERLEIELAREQLLKSERAARNEAENM 306

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNL 623
             +K+ F+  +S+ELR+PLT I+G+++LL       +  +   Y  +  I++S+ +   L
Sbjct: 307 ARLKDEFLSTLSHELRTPLTTILGWSELLLQR----IEEQHPCYKGLSVIASSAKVQKRL 362

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LDL+++  G M+L    + L + + EV       +     R+ + +       + D
Sbjct: 363 ISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGD 422

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QIF  +LSNA+ F+     + ++   D   F  SV ++G  I  +    +F+RF 
Sbjct: 423 ATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAEFLPHLFSRFR 482

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
                  R   G+GLGL+IV+S + +HGG+V  +S            +
Sbjct: 483 QADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 530



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G     N S+ ++   + +V +   G       E IK+    + + ++   E  +    
Sbjct: 71  DGIFRLTNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARAL--- 127

Query: 272 GNNKSY--KIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD 323
              + Y  +++RV    G     + +D+++   +  +L  +    + L   +     +FD
Sbjct: 128 --RRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFD 185

Query: 324 QNRYLQFHNRSFVELWEIDLA-------FLATNPSNDELLEF-LRSANKLPEQLNWKTWK 375
               ++F N ++ E + +DL+        +  +P +  + EF L +A K    L      
Sbjct: 186 AQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA 245

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                 ++  E      + P+G  +          G     +++T ++++E     L+K 
Sbjct: 246 RRYDGQWRWIEMSATPRYSPDGHFI----------GLTGSSQDVTERLEIELAREQLLKS 295

Query: 436 QGET 439
           +   
Sbjct: 296 ERAA 299



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGI 231
           ++ E     ++L+     F +L D L   VW  D  G + + N +Y        +     
Sbjct: 152 DITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTLP 211

Query: 232 VFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
            +   +     L F+ ++   + + SAL             G  +  ++          +
Sbjct: 212 EWSMVLHPEDVLIFEFKLSAALKTQSALRALVRARRY---DGQWRWIEMSATPRYSPDGH 268

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G  G + DV++ + +        +
Sbjct: 269 FIGLTGSSQDVTERLEIELAREQLLK 294


>gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
 gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
          Length = 1221

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 162/399 (40%), Gaps = 34/399 (8%)

Query: 420 TVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T Q++ L  +     +     ++H+ + V      G +   NP    L+       + G 
Sbjct: 401 TAQLERLNAELAIKEEETRSVVEHMVDCVVSTDDRGVMLSVNPVMEKLFGYTVEE-AIGQ 459

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-----SIIPL 533
           ++  +     R  +E                 R  L G   +     +E      ++IPL
Sbjct: 460 NVSILVPEPDRSMHEYYMQRYCETGYGQQYVGRPQLPGGHNVGLGREVEGVRKDGTVIPL 519

Query: 534 ----------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                               ++ + V+  + L +       A++ K++F+  +S+E+R+P
Sbjct: 520 YLAVSEYFVGDERHFTGIMRDMREHVKIRQDLEQARHEAELANQAKSAFLAAMSHEIRTP 579

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  +IG  D+L  +   SL++ Q +  + I  S+  LL ++ DILD + ++AG +++  +
Sbjct: 580 MNGVIGMIDVLDQT---SLSTYQREMTDLIRESAFALLEIIEDILDFSKIEAGRLEIEQT 636

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
            I L  ++     ++        + + +  D  L    + D  RL QI   +++NA+ FS
Sbjct: 637 PISLEKVVERACGTLTHMAASKEVELTLFVDPALPEGVLGDALRLRQILINLINNAIKFS 696

Query: 703 SKG----STVILKA---ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
             G      V ++A      +GD +   F V +NG  + +   + +F  F        RR
Sbjct: 697 -SGMSRLGRVAVRASPAEEVDGDVVTVMFQVIDNGIGMDDAARERLFTPFSQGDASTTRR 755

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGL I    + L  G +S+ S  +  +    RIP
Sbjct: 756 FGGTGLGLIICRRLVELMKGEISVESKPDVGSVFTVRIP 794


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 10/249 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+ L +  +A  ++  IK  F   VS+ELR+PL  +IG  +LL  ++   L   Q +YV
Sbjct: 255 REQELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNTE---LTPNQREYV 311

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669
           +    S   LL+L+ +ILD + +++G  KL+     L + L++V   +A +    ++ I 
Sbjct: 312 QVACGSGETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGLLAAQAQRKDLEIG 371

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKN 725
            V+++        D  R+ QI   ++ NA+ F+ +G   + ++            F V++
Sbjct: 372 YVVAENVPLFMRGDATRIRQILINLMGNAVKFTEQGEVSIEVRLLEKKAKKLVLHFEVRD 431

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +    VF  F        R   G GLGL+I    ++L GG + + ++ +  + 
Sbjct: 432 TGIGIPLEFLARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDLGVENNLDKGSL 491

Query: 784 INCRIPSKE 792
               +P +E
Sbjct: 492 FWFTVPLEE 500


>gi|160883653|ref|ZP_02064656.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483]
 gi|156111066|gb|EDO12811.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483]
          Length = 391

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 184/382 (48%), Gaps = 23/382 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K      + G  + ++   + +   D ++  +N   ++  +        G  ++   A 
Sbjct: 10  RKLERTSHIAGAILKNVHAFILLIDNDFKVLKTNYYQKTGTRKGTEEKRVGDLLQCRNAL 69

Query: 487 CSRY----YNESDGWDLFAAIITSFDDER--KSLQGTLELLS--------DSVLEYSIIP 532
            +      ++      +  AI  +F+  R    L+ TL +++        D+V+  S   
Sbjct: 70  AAEGGCGTHSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGSYFL 129

Query: 533 LPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           L   + M +T  +VT   +AE+ L    E   KAD  K++F+ ++S+E+R+PL  I GF 
Sbjct: 130 LNEEENMVITVHDVTRRKQAEKELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFA 189

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L      +   +++QY E I  ++ +L+ LVNDILD++ ++AG ++   +T+ +N LL
Sbjct: 190 EVL---GSATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNQLL 246

Query: 652 NEVKQSIATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++++Q    ++ +   NI+I   S         DR R+ Q+ S    NA+ F+ KGS + 
Sbjct: 247 SDLQQLFQMRVDDAGGNIQIIAESSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHKGS-IR 305

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           L     + +  F VK+ G+ IP +    VF RFV       ++G GLGLSI ++ +   G
Sbjct: 306 LGYEARDTELYFYVKDTGTGIPAEKLPDVFERFVKL--NKDKKGAGLGLSISQTIVAKLG 363

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +  +S +   +T    IP +
Sbjct: 364 GQIGANSVEGEGSTFWFTIPYR 385


>gi|186683956|ref|YP_001867152.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466408|gb|ACC82209.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 609

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 3/247 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +  + L+  N+ L + +++KN F+ + S+E+R+PL++IIGFT+LL          +Q 
Sbjct: 212 WQQQYQQLSNSNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTNLLLAPGYEPTIERQR 271

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  I +S   LL L+NDILDL+ ++A  +++ +  + +  L + V   +  K    ++
Sbjct: 272 EYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWECVDVPLLCSNVLALVKEKAANKDL 331

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R+ +  D  + + VAD  RL Q+   +L NA+ F+SKGS V L+         F+V + G
Sbjct: 332 RLCLEIDPDITTLVADSLRLKQMLLNLLFNALKFTSKGS-VGLQVVAKGISVHFTVWDTG 390

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           S I ++    +F  +     A  G   G GLGL++      +HGG V + S  +  +   
Sbjct: 391 SGISQEDQTQLFEPYFQIAKAVAGGAEGTGLGLAVTRKLAQIHGGSVKVESEVDSGSRFT 450

Query: 786 CRIPSKE 792
             +P ++
Sbjct: 451 LVLPLQQ 457


>gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1407

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 159/393 (40%), Gaps = 31/393 (7%)

Query: 423 VDLETKYNTLV----------KVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +L+ +   L+           +  + +   +E  +     +G I L N     +     
Sbjct: 515 KELDAQRRELLNTHEATGKVNAMLQDILAAATEIAIIGTDVNGLITLFNTGANKMLGWIA 574

Query: 472 NRL------SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSD 523
           + +      +       +AA C      S    + A  + +  D R+   ++        
Sbjct: 575 DEVVGLQTPACFHREDELAAACRTADVSSSFGAIVAGAVMNGHDSREWTFVRHDGTEFIG 634

Query: 524 SVLEYSIIPLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +L  ++  + +  +  +    +++     E+ L        +   +K+ F+ ++S+E+R
Sbjct: 635 LLLTSAVYSMDSVISGYLCVIQDISGRRETEQNLINARTLAEETSRMKSDFLANMSHEIR 694

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  IIG + L   +    L  +Q  Y++ I  S   LL ++NDILD++ ++AG + + 
Sbjct: 695 TPMNGIIGMSHLALNT---DLTPRQRDYLKKIQQSGQNLLRIINDILDISKIEAGKLSIE 751

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMD 700
           +S   L + L +V   I  K  E  + + +     +    + D  RL Q+     SNA+ 
Sbjct: 752 HSEFELENTLADVVALIGEKTTEKGLELILDIASDVPVNLLGDSLRLGQVLLNYASNALK 811

Query: 701 FSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           F+ +G  VI ++    + D     F V++ G  +  +    +F  F        RR  G 
Sbjct: 812 FTEQGEIVIAVRLRERSEDQVLLYFEVRDTGIGLSSEQISRLFTPFTQGDASTTRRYGGT 871

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL+I     +L GG   ++S +   +T    
Sbjct: 872 GLGLAICRQLADLMGGEAGVNSVEGQGSTFWFT 904


>gi|168184825|ref|ZP_02619489.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|182672089|gb|EDT84050.1| sensory box histidine kinase [Clostridium botulinum Bf]
          Length = 615

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 172/391 (43%), Gaps = 16/391 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + +  N   Q +++ +    + ++ E      I +  + + V    G+I  +N   + + 
Sbjct: 198 VNILANKLDQKEIQKRNMEQLLMKNENCYNLLIRNSKDAILV-HRYGKIIFANERLKQML 256

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA---IITSFDDERKSLQGTLELLSDS 524
             + +       I+++         + +  +L+     I+    +   + + T++  S  
Sbjct: 257 GYKRDYNFEDIDIKSLIPKDQYDTVKDELENLYCGSKNIVKFQHNVINNKEKTIQNTSTY 316

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELR 581
           V+ Y  +P   +  +    +     + E+ + +  E L +    +++   F+ ++S+EL+
Sbjct: 317 VI-YDGMPTIFS-ILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHELK 374

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I     LL   +      KQ +Y++ I  +   L+ L+N++LD   +D+G +KLN
Sbjct: 375 TPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLN 434

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +  L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSN++ F
Sbjct: 435 LVNYNIVSLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKF 494

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           ++ G  + +K      +    VK+ G  IP D  +S+F RF          + G G+GL 
Sbjct: 495 TNPGGHIFVKIKDCGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLH 554

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +V+SF+ +H G V I S     T    ++P+
Sbjct: 555 LVKSFVEMHKGTVHIKSELGQGTEFIIKLPA 585


>gi|218438110|ref|YP_002376439.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7424]
 gi|218170838|gb|ACK69571.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7424]
          Length = 577

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 117/255 (45%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +   + +Q +++E 
Sbjct: 305 QELEQATHAAEEASRLKSEFLASTTHELRTPLNGIIGFLKLILDG-MADDSEEQQEFLEE 363

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILDLA ++AG M L    + L +LL  V    A +  +  +  K+ 
Sbjct: 364 AHKSALHLLNLINDILDLAKIEAGKMVLELEPVDLEELLTAVNNFTAPQAEQKGLTFKIK 423

Query: 673 SDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAARDN--GDFI 720
                   +   + QRLLQ+   ++ NA+ F+ +G  V+        +        G   
Sbjct: 424 KPQTHTPITLYGNYQRLLQVMLNLVGNAIKFTHEGGIVVSAEIVKKKILCHEQEFPGIVK 483

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  +    +F +FV           G GLGL+I +  +   GG +   S  
Sbjct: 484 ISVADTGIGVSLEQQAKLFEKFVQIDGSRTKAYGGTGLGLAISQKLVQAMGGQIDFYSMG 543

Query: 779 EG-VTTINCRIPSKE 792
           EG   T+    P +E
Sbjct: 544 EGLGATVTFTTPLQE 558


>gi|60682196|ref|YP_212340.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493630|emb|CAH08419.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1015

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 216/511 (42%), Gaps = 40/511 (7%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-ELLEFLRS 361
           + + +   ++ N+     +      L  + +   +    DL +L  NP  +         
Sbjct: 378 EAMANYKNLIDNMP----LLYMQEKLIVNEQGVAD----DLIYLNVNPHFEKHFFRREDV 429

Query: 362 ANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHLPNG-QTLHVIVTSNPRGGTIWMFE 417
             K   +L  ++  E +  +    K +      ++     +   +++    +   I +F 
Sbjct: 430 VGKRASELFPESLPEFLHFIQISLKENRAITFPYYFKKIDRFYDIVLKGAHQENVIDIFC 489

Query: 418 -NLTVQVDLETKYNTLVKVQGETIDHLSEGV----------AVFGPDGRIKLSNPAFRSL 466
            + T     + K N         ++ +++ +           +   +  I+LS    +  
Sbjct: 490 VDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIELS---AQGN 545

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             +EE    P +   +      R   E    DL    +    +E + +           +
Sbjct: 546 NVSEEQLAVPDSQYFSKIYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINIRNHTHKIEWV 605

Query: 527 EYSIIPLPNAQT------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           E         +       + +   +T   + E  LT   +   +++ +K++F+ ++S+E+
Sbjct: 606 EAQAAVETRDENGIPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEI 665

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+ +L +++       + +YV  I  ++ +LL L++DILDL+ ++AG ++ 
Sbjct: 666 RTPLNAIVGFSGILASTEEEEE---KQEYVSIIENNNALLLQLISDILDLSKIEAGTLEF 722

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            YS I LN  L +++ ++  K+  ++++++ +    +     ++ RL Q+   +++NA+ 
Sbjct: 723 QYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIK 782

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           F+S+GS +         +  F V + G  IP+D  +S+F RFV      Q  G GLGLSI
Sbjct: 783 FTSRGS-IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSI 839

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +   GGH+ + S +   +T    +P K
Sbjct: 840 CRTLVEHMGGHIGVDSEEGKGSTFWFSLPYK 870


>gi|16804538|ref|NP_466023.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47096093|ref|ZP_00233694.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|224499856|ref|ZP_03668205.1| two-component sensor histidine kinase [Listeria monocytogenes
           Finland 1988]
 gi|224503259|ref|ZP_03671566.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           R2-561]
 gi|254900362|ref|ZP_05260286.1| two-component sensor histidine kinase [Listeria monocytogenes
           J0161]
 gi|254913399|ref|ZP_05263411.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
 gi|254937780|ref|ZP_05269477.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|16411988|emb|CAD00578.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47015554|gb|EAL06486.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|258610383|gb|EEW22991.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|293591405|gb|EFF99739.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
          Length = 591

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 155/369 (42%), Gaps = 29/369 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKN 462

Query: 667 IRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           I++ +I +  + S     DR +L QI   +LSNA++++     V +K      + I  V 
Sbjct: 463 IQV-IIPEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVT 521

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +
Sbjct: 522 DNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGS 581

Query: 783 TINCRIPSK 791
           T    +P K
Sbjct: 582 TFRVTLPKK 590


>gi|328469859|gb|EGF40770.1| putative two-component sensor [Vibrio parahaemolyticus 10329]
          Length = 632

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 24/300 (8%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--------------VRAERALTE 557
           + L   L+LLS +V ++S    P+  T+       +                  +  L  
Sbjct: 173 RLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEA 232

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +    A+  K+ F+  +S+E+R+P+  IIG   LL  +K   L+ +Q ++VE I  SS
Sbjct: 233 ERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTK---LDPQQKEFVEIIDNSS 289

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ +++DILD + V+AG ++L   T     LL++V      K  + N+++    D KL
Sbjct: 290 QSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKL 349

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPE 732
                 D  RL Q+ + +LSNA+ F+ +G   +L +  +         F V ++G  I +
Sbjct: 350 PAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAK 409

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  ++VF RF        R   G GLGL+I    +++ GG + ++S     +  +  IP 
Sbjct: 410 EHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTSELGLGSCFDFTIPL 469


>gi|326204683|ref|ZP_08194539.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985250|gb|EGD46090.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 598

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 166/386 (43%), Gaps = 21/386 (5%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGET-IDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  +  ++D          V+ +T I+ +  G+     + +I + N     ++ 
Sbjct: 229 GQLALTFNEMADKLDETLSGIMDKNVKVDTVINSMRNGIIAIDNNSKIIIINATACDMFD 288

Query: 469 TEENRLSPGTHIRNIAAT--CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +      G ++ +I      +    E+   D      +S  DE      +L +  D + 
Sbjct: 289 VQYGPGIIGKNLIDITRNSKVNSLLRETIKND------SSLIDEIVMFSPSLGI--DKIY 340

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                 + ++           +            ++RK ++I+  FV +V++EL++PLT+
Sbjct: 341 RIYTNTIKSSDGKHQTAGAVIT-------LNDITSVRKLEQIRTEFVSNVTHELKTPLTS 393

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I GF + LK   +         +++ I   +  L  L+NDIL L+ ++A     +   I 
Sbjct: 394 IRGFVETLKNGAIEDTTVAVK-FLDIIDIEAERLYTLINDILQLSEIEAMRKDDSVMEID 452

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  +++EV   + +   + NI ++V +       +A R R+ Q+   ++ NA+ ++ +  
Sbjct: 453 LRQIIDEVVLILKSSADKKNILLEVSTVPSHIQIIASRNRIKQMLINLIDNAIKYNVENG 512

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESF 764
            + +KA ++NG+ + S+K+ G  IPE     +F RF            G GLGLSIV+  
Sbjct: 513 KICVKAEKNNGNTVISIKDTGIGIPEMHHSRIFERFYRVDKGRSRNMGGTGLGLSIVKHI 572

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           INL+ G + I S     T    ++P 
Sbjct: 573 INLYSGDIHIISEPGKGTEFIVKLPL 598


>gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 788

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 124/253 (49%), Gaps = 10/253 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + ++T    AE A+    E   +A + K+ F+ ++S+E+R+P+  IIG + L   +K   
Sbjct: 30  YQDITAVKAAEDAIRAAKEIAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTK--- 86

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ KQ  Y+E +  S   LL ++NDILD + ++AG M +      L D+++ +   +  K
Sbjct: 87  LDKKQRNYIEKVHRSGENLLGIINDILDFSKIEAGKMTMESIDFRLEDVMDNLANLVGLK 146

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
             +  + +       +  + + D  RL QI   + +NA+ F+ KG  ++    ++ + D 
Sbjct: 147 AEDRGLELLFNVAPDIPSALIGDPLRLGQILINLGNNAVKFTEKGEIIVGAELVERSEDQ 206

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
            +  F V+++G  +  + C  +F  F        R   G GLGL+I ++ + L  G + +
Sbjct: 207 AELHFWVRDSGIGMTPEQCGKMFKSFSQADTSTTRKYGGTGLGLAISKTLVELMDGRIWV 266

Query: 775 SSSDEGVTTINCR 787
            S     +T +  
Sbjct: 267 ESEAGKGSTFHFH 279


>gi|319782145|ref|YP_004141621.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168033|gb|ADV11571.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1260

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 120/576 (20%), Positives = 224/576 (38%), Gaps = 24/576 (4%)

Query: 223  KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                + E         E      E        ++            L+    K+   V  
Sbjct: 695  ADFRDAEDSEDWAQPDEEAASPDERAVAEQAVNAGDAAEIRVERPRLQVPPLKAEGFVPS 754

Query: 283  LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              S G+   A D S              +L  L V + I   ++ L + N  F+ L   +
Sbjct: 755  AFSAGDEHKAPDTS--------------LLGKLPVPLLIHSGDQ-LHYANEEFLSLTGYE 799

Query: 343  L-AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                LA       L     + + + +  +     +         E    +    +G+ L 
Sbjct: 800  ALDDLADAGGLGALFADPYADDGVSDGTDRALRLKTRDGQEFPIEAILRSVPWRDGKALM 859

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLE--TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            ++V  +           +  +      ++    +      ID  ++GV + G DG I+  
Sbjct: 860  LVVRRSGEDDAPASLHVVGDEQTQPDISELKARIAEMRTIIDTATDGVVLIGRDGTIRSI 919

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            +    +L+  + + ++ G    ++ A  S+         L    + S  ++ + + G   
Sbjct: 920  SRPAEALFGFDSDDVT-GKPFASLFAIESQRAARDYLNGLSEPGVASVMNDGREVIGRES 978

Query: 520  LLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                  L  +I  LPN         ++T   RAE  LT+      +A   K  F+  +S+
Sbjct: 979  QGRFIPLFMTIGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISH 1038

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            E+R+PL  IIGF++L+   K G + N +   Y+  I+ S   +L+LVND+LD++ ++AG 
Sbjct: 1039 EIRTPLNAIIGFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQ 1098

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             ++ Y  + LND L E    +  + +   + I+     +L   VAD + + QI   ILSN
Sbjct: 1099 QEMAYEAVSLNDTLAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSN 1158

Query: 698  AMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GV 754
            A+ ++  G  VI+  A   +GD +  V++ G  +     +     F   NA +  R  G 
Sbjct: 1159 AIRYTQAGGQVIVSTAYETSGDVVMRVRDTGIGMSHAEIEQALKPFKQINALKRGRGDGT 1218

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGL + ++ +  +    +I+S+    T +    PS
Sbjct: 1219 GLGLPLTKAMVEANRARFTINSTPGEGTLVEVAFPS 1254


>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 992

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 146/339 (43%), Gaps = 12/339 (3%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           P  ++L    E  ++    + + +    R            A+I +  +E        + 
Sbjct: 250 PGIQALRDGVETFITSEPRLVDQSDRRFRIVAPRAVAGYPLAVIVAATEELVLADWRRKA 309

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L        +  L     +     + +   A     +  +   +A++ K +F+  +S+E+
Sbjct: 310 LMLGAGSGGLSLLLLGLMVWIARLLDNRETAMATARQAQQVAERANQAKAAFLATMSHEI 369

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  +IG T LL  ++   L+ +Q  +   I  S+  LL ++NDILD + ++AG + L
Sbjct: 370 RTPMNGVIGMTGLLLDTQ---LDPEQRHFATTIRDSAESLLTVINDILDFSKLEAGKLDL 426

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
             +   L  L+  +   +A + H   I I  + D  L ++V  D  RL QI   +  NA+
Sbjct: 427 ESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPDLPAWVRGDPGRLRQILMNLAGNAI 486

Query: 700 DFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
            F+S G  + ++   +      G   F V++ G  IP+D    +F+ F+       RR  
Sbjct: 487 KFTSHGG-ISIEVRDETSPDGAGRLRFDVRDTGIGIPQDAIGRLFSMFMQVDASTARRYG 545

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +    + GG + + S+    +     +P +
Sbjct: 546 GTGLGLAISKRLTEMMGGTIGVESTPGAGSLFWFSLPFQ 584


>gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 531

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 4/245 (1%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L E N  L++ D IK+ F+ + S+ELRSPLT +I FT+LL     G LN  Q  YV 
Sbjct: 281 REMLAETNRQLQETDRIKDEFLANTSHELRSPLTAVIAFTELLMDESSGELNDLQRDYVH 340

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ S   LL ++N  LDL+ + AG   L      +++L+ ++   +    +   I ++V
Sbjct: 341 EINDSGRELLGMINGFLDLSKIAAGKTFLYREHFKIDELIEDIFLRMRHLFNNKGITLEV 400

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSS 729
             +       ADR +  Q+ + +LSNA+ F++ G  V++++   +   D I +V++ G  
Sbjct: 401 ARNKNQLPVWADRGKTGQVLTNLLSNALKFTTTGGKVVVESNSGDSGRDVIITVRDTGIG 460

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I     + +F  F            G+G+GL++ +  + LHGG + +SS     +     
Sbjct: 461 IDIRDQEKIFQPFYQVDGTSTRNYGGMGIGLNLAKKLVELHGGTIRVSSQQNAGSIFTFT 520

Query: 788 IPSKE 792
           +P++E
Sbjct: 521 LPTEE 525


>gi|150009171|ref|YP_001303914.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937595|gb|ABR44292.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 769

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 161/379 (42%), Gaps = 21/379 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ +  +   L +     +   +    ++         N  + +     +  +     + 
Sbjct: 395 ELQIARQAQDLNQKYQLVLKASNMMTWIWDVKEARLECNNIYLTQRSIRDKGIDGLFSMS 454

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-------- 533
             A       +  D   +  AI      E  S+   +  L D+ LEY+ I +        
Sbjct: 455 --ADEFYSGIHPEDLEQMQDAINKLIAGESISIDEEIRYLDDTGLEYTWIEIFAIVGKTD 512

Query: 534 ---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               +A        +    + E+ L    E + +++ +K++F+ ++S+E+R+PL  I+GF
Sbjct: 513 PEGKSAYLTGGTTLINQRKKMEQELR-DKEKIEESNRLKSAFLANMSHEIRTPLNAIVGF 571

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           ++LL  +     + +  ++ E I  ++ +LL LVNDILDL+ ++AG M   YS   ++ L
Sbjct: 572 SNLLAETCH---SEETREFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTL 628

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
              + Q+  +++ +  + +      +     +++ RL Q+ +  L+NA  F+ +GS + +
Sbjct: 629 FRSLYQTFQSRVKD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS-IRM 686

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
                     F VK+ G  I       VF RF       Q  G GLGLSI ++ +    G
Sbjct: 687 GYKEREDGLYFYVKDTGKGIERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHG 744

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S +   +T    IP
Sbjct: 745 KIGVESEEGKGSTFWFTIP 763


>gi|78043472|ref|YP_360244.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995587|gb|ABB14486.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 488

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 122/242 (50%), Gaps = 1/242 (0%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +    L +   A  K ++ +  F+ +VS+ELR+PLT I G+T+ L    +     ++ +
Sbjct: 235 NQMAAQLEKYIIAYNKREQNRREFLANVSHELRTPLTIIQGYTEALLDGIVTDEKIRE-E 293

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ I   +  L  + N++LDLA+++ G  KL +  I L +   +   +  T+  E  I 
Sbjct: 294 HLKNILQEAERLKAMANELLDLASIEEGREKLKFEKIDLANFAQDCFNAFKTQFFEKGIE 353

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +++  + + G  V DR +LL++   +LSNA+ F+  G  V  +      D+   VK++G 
Sbjct: 354 LELEVNVQDGKVVGDRSKLLRVVGNLLSNALKFTPAGGKVKFEVIEGEKDYQIHVKDSGP 413

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IPE   + +F RF         +G GLGL+I +S +  HGG +   ++ EG       +
Sbjct: 414 GIPEQDLEKIFERFYKVDKARSSKGFGLGLAITKSIVEAHGGQIFARNNPEGGAKFTVVL 473

Query: 789 PS 790
           P 
Sbjct: 474 PK 475


>gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane
           protein; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1065

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 8/287 (2%)

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV----TDSVRAERALTEKNEALRKADEI 568
           ++   ++LL+ + + YS+  +P    +   V          RA   +   ++ L   D++
Sbjct: 369 AIAAFVDLLNANQIFYSVEAIPIGIFVFILVQSLTLSRRFSRAFSEVETLSKRLLALDKL 428

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ + S+EL++PL  IIG  + +     G LN +Q Q +  I +S   L +LV+DIL
Sbjct: 429 KDEFLANTSHELKTPLNGIIGIAESMFDGIGGKLNQEQRQNLGMIVSSGKRLSSLVDDIL 488

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D + +    + L+   I L+ + + V           N+ ++          + D  RL 
Sbjct: 489 DFSKMKNRDLDLDLKAIDLHQICDFVLVISRPLYVTKNLTVRNNVPIDFPPILGDEARLQ 548

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           QI   I+ NA+ F+ KG  + + A       + S+++ G  IP+D    +F  F      
Sbjct: 549 QILFNIIGNAIKFTEKG-RIDVSAEIIEKMAVISIRDTGIGIPKDKFGDIFRSFEQVDAS 607

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792
             R   G GLGL+I +  + LHGG++ + S+    +  +  +P ++E
Sbjct: 608 TTRKFGGTGLGLAISKRLVELHGGNIWVESTPAEGSMFSFSLPLARE 654


>gi|153011243|ref|YP_001372457.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum
            anthropi ATCC 49188]
 gi|223635612|sp|A6X5X4|PDHS_OCHA4 RecName: Full=Cell-division control histidine kinase pdhS
 gi|151563131|gb|ABS16628.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum
            anthropi ATCC 49188]
          Length = 1055

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 116/588 (19%), Positives = 228/588 (38%), Gaps = 40/588 (6%)

Query: 225  NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
             T+TE   F++     RK      +    + +  ++   ++   +E    K+  I  V  
Sbjct: 478  LTKTERNAFREIADRLRKQGLANSRAETETVAISDEPVIDSSQPVEKTEVKASLIDEVTA 537

Query: 285  SFGEA---GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                    G+A                  +L NL V + I   +  + + N++ ++L   
Sbjct: 538  DEASLPSSGMA------------YGDETALLANLPVPVIIHSGD-KIHYVNQALLDLTGY 584

Query: 342  DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
            +   L        +     S +   E       +       +  + H +      G+ L 
Sbjct: 585  ES--LDDIRGAGGVDVLFNSESDDGETRQGMVLR-RANGSEEPVDAHLNAISWREGRALM 641

Query: 402  VIV-------TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            + +        S               + D +      V+     +D  ++GV +  P+G
Sbjct: 642  LSLMPVAAAPVSVEAVAAPAEAPVAIDKDDEKQALADHVEELKTILDTATDGVVLIDPEG 701

Query: 455  RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            RI+  N +  +L+   E   + G     + A  S+         L    + S  ++ + +
Sbjct: 702  RIRSMNHSASALFG-YERDETEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREV 760

Query: 515  QGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G         L  +I  LP+ +       ++T   R E  LT   +   +A   K  F+
Sbjct: 761  IGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNARKEAERASSQKTEFL 820

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLAT 632
              +S+E+R+PL  IIGF++L+   K GS+ N +   Y+  I+ S   +L LVND+LD++ 
Sbjct: 821  ARISHEIRTPLNAIIGFSELMADEKFGSIGNDRYRDYLRDINRSGNHVLALVNDLLDISK 880

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            ++AG + + +  + LND + E    +  + +   + I+      L   VAD + + Q+  
Sbjct: 881  IEAGALDMQFEAVSLNDAIAEAIALMQPQANRERVIIRSSFQSNLPDIVADTRSIKQVAL 940

Query: 693  KILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVS------- 744
             +LSNA+ F++ G  VI+  + + NGD +  V++ G  + +   +     F         
Sbjct: 941  NLLSNAVRFTAPGGQVIVSTSYEMNGDVVMRVRDTGIGMTKSEVEQALKPFRQVNALERR 1000

Query: 745  ---NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                A   +  G GLGL + ++ +  +    +I S+    T +    P
Sbjct: 1001 KAETAKDWRSEGTGLGLPLTKAMVEANRAQFAIDSTPGHGTVVEIAFP 1048



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 24/198 (12%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +D + ++ A          +       L  +L   V        I + N +    T  E 
Sbjct: 532 IDEVTADEASLPSSGMAYGDET----ALLANLPVPVIIHSGD-KIHYVNQALLDLTGYES 586

Query: 231 IVFQKAIGESRKLFKEEIKKR-------MISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
           +   +  G    LF  E           +  ++  E+     ++ +     ++  +  + 
Sbjct: 587 LDDIRGAGGVDVLFNSESDDGETRQGMVLRRANGSEEPVDAHLNAISWREGRALMLSLMP 646

Query: 284 NSFG-----------EAGIAID-VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
            +             EA +AID   ++  + D +     IL   T  + + D    ++  
Sbjct: 647 VAAAPVSVEAVAAPAEAPVAIDKDDEKQALADHVEELKTILDTATDGVVLIDPEGRIRSM 706

Query: 332 NRSFVELWEIDLAFLATN 349
           N S   L+  +       
Sbjct: 707 NHSASALFGYERDETEGK 724


>gi|218515205|ref|ZP_03512045.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli 8C-3]
          Length = 535

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 97/526 (18%), Positives = 191/526 (36%), Gaps = 38/526 (7%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
             A     E                +   + +FD        NR + +L+      L   
Sbjct: 8   AHAQAERAEQEARAAHARLLAAFEVVPEGLVLFDAEDRFVLWNRRYEQLYAESGDMLVKG 67

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
              ++ L       + PE +  +         + +  T K    LP  + + +       
Sbjct: 68  MRFEDRLRTGLECGQYPEAVGREEEWLEERLTHHAEPTSKHEQRLPGNRWIRIEERRISE 127

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWK 468
           GG++ +  ++T     E  +  L        +     + V+  +  +    N A    + 
Sbjct: 128 GGSVGIRVDITDLKMQEASFRLL-------FEGNPMPMWVYDRETLKFLHVNQAAIDHYG 180

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
               +    T +R+I A        +  +D  A    + D   + L+     +  +V   
Sbjct: 181 YRLEQFLTMT-LRDIQAPQDADRATAAVFD--AEDPAAHDRSFRHLKADGGAIEVTVYST 237

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA----------------------- 565
            +     A +++  V+VT++ RAE+AL +  + L +                        
Sbjct: 238 CLNHNGKAASLMAVVDVTEAKRAEKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEK 297

Query: 566 --DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             +E++  FV   S+E R+PL  I G    L   K  +     ++  + I +S + +L L
Sbjct: 298 QINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRKEAATPEFLAEKADQIRSSVSRMLEL 357

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +  IL    +D G + +      + +++        +    +   +K+  D    +   D
Sbjct: 358 MESILAAGRLDHGRITIVPKPCSIAEIIETCSARQESIRRSHRFLLKL--DELPETIYGD 415

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R  L Q+FS + SNA+ ++     V +   R+      +V++ G  I  D    +F R+ 
Sbjct: 416 RPALDQVFSNLFSNAVKYAPDSPNVHVSGWREGERVCITVRDEGIGIDVDDLPKMFQRYF 475

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                    G G+GL++V+  + LHGG + ++SS    TT   RIP
Sbjct: 476 RARSSTGIAGTGIGLNLVKQIVELHGGTIDVASSRGNGTTFTLRIP 521



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 44/158 (27%), Gaps = 7/158 (4%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYK 223
           ++RI              +    L    + F++LF+     +W  D+     L  N +  
Sbjct: 117 WIRIEERRISEGGSVGIRVDITDLKMQEASFRLLFEGNPMPMWVYDRETLKFLHVNQAAI 176

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
            +       F        +  ++  +       A +    +        +  + ++    
Sbjct: 177 DHYGYRLEQFLTMTLRDIQAPQDADRATAAVFDAEDPAAHDRSFRHLKADGGAIEVTVYS 236

Query: 284 NSFGEAGIA------IDVSKEITVNDQLTHTYEILHNL 315
                 G A      +DV++       L    + L  +
Sbjct: 237 TCLNHNGKAASLMAVVDVTEAKRAEKALLQHRDTLEEM 274


>gi|167625908|ref|YP_001676202.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167355930|gb|ABZ78543.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 885

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 133/249 (53%), Gaps = 9/249 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +  +    + +  +   KA++ K+SF+ ++S+E+R+PL  IIG +D++  +K   L + 
Sbjct: 360 NERHQNVLKILQAKQEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIMAGTK---LTAT 416

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q++Y++ I  SS  LL L+NDILDL+ +++G + +  +   + +++ +    +  K+ E 
Sbjct: 417 QNEYLQTIETSSQTLLILINDILDLSKIESGNLSITNTDADITEVVYDTLTIVLAKIAEK 476

Query: 666 NIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIF 721
           N+ ++V  D      ++ D  R+ Q+   +LSNA+ F+ +G   V++  +      D + 
Sbjct: 477 NLTLEVEIDNDTPYLISLDEHRMRQVLVNLLSNAVKFTHEGGVKVVISCSNTADYCDLLI 536

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           S+ ++G  I ++  + +F+ F        R   G GLGL+I +  I L GG +S+ S   
Sbjct: 537 SIHDSGIGIAKEKQQHIFSPFTQEDDTTTREFGGTGLGLAICKQLITLMGGEISLISEKG 596

Query: 780 GVTTINCRI 788
                + ++
Sbjct: 597 EGCCFSIKL 605


>gi|217963398|ref|YP_002349076.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|217332668|gb|ACK38462.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|307572027|emb|CAR85206.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 591

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 151/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEGTFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EVLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKN 462

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           IR+ +            DR +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IRVTIPEKTSASVMIETDRDKLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|310824380|ref|YP_003956738.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397452|gb|ADO74911.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 683

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 157/367 (42%), Gaps = 18/367 (4%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +   E  D    G     PDG +   N  F          L  G   + +     R +
Sbjct: 16  AEESAEELYDSAPCGYISTLPDGTLVRVNQTFLKWMGYSREELLGGKRFQELLTGGGRIF 75

Query: 492 NESDGWDLF----AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +E+    L     A    SFD  RK  Q    LL+   ++             T  ++TD
Sbjct: 76  HETHCVPLLQMQGAVNELSFDLVRKDGQRVPVLLN--TVQKKDASGKTLFHRTTLFDITD 133

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               ER L    +   +A   K  F+  +S+E+R+P+  IIG ++LL  + L  L     
Sbjct: 134 RRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLPPL---YQ 190

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y   + +SS  LL L+N ILD   ++AG + L      L  LL+ +  +++ K  E  +
Sbjct: 191 EYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSVKAEEKKL 250

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----F 721
            I+V  D ++  + + D  +L Q+ + +L NA+ F+ +G+ V L   R +GD       F
Sbjct: 251 SIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQGA-VTLAVRRLHGDAEGVFLGF 309

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  IP+D    +F  F   ++    +  G GLGL+I +  + LHG  + + S   
Sbjct: 310 KVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKMRVESVPG 369

Query: 780 GVTTINC 786
             ++   
Sbjct: 370 EGSSFAF 376


>gi|212634459|ref|YP_002310984.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555943|gb|ACJ28397.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1192

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 110/557 (19%), Positives = 211/557 (37%), Gaps = 61/557 (10%)

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIA-------IDVSKEITVNDQLTHTYEILHNLTVAI 319
           + +  G  +    V   +  G+A  A       ID+ K   + +  T    IL       
Sbjct: 186 TRVFSGEKQVKVPVTSQDEIGQAAHAFNQMVEQIDI-KTHALENANTRLSTILGTALDGY 244

Query: 320 AIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLE-------FLRSANKLPEQLNW 371
            I + +  +   N +   L+   D   L  N S    L        ++R      E    
Sbjct: 245 IIINTHGEISEVNPAVSRLFGYKDSELLGQNVSLLLPLAERGMHDVYIRKYLDSGESKII 304

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW---MFENLTVQVDLETK 428
              +E +         HK+    P    + + ++     G +    + ++L+     +  
Sbjct: 305 GKGRELMAQ-------HKEGELFP----IELSISKMILDGELLFLGLVKDLSDVKRAQVA 353

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                 +   T++   +G+      G I+  N +   +++   + L        +     
Sbjct: 354 AQRTESILLATLEGSKDGLITIDITGEIQEVNDSACLMFQAHSSAL--------VGERME 405

Query: 489 RYYNESDGWDLFAAIITSFD--DERKSLQGTLELLSDS------VLEYSIIPLPNAQTML 540
               +      F  I+  +      K+ +   E+ +         +E ++IP+   + ML
Sbjct: 406 TCLFQGGARATFREILEEYRLTGAGKAFKNATEIFATRFDGKLLPIELTLIPVQLGEEML 465

Query: 541 TFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
               + D  R    E  L    E   +  + K+ F+  +S+E+RSPL  ++G  DLL  S
Sbjct: 466 LTAFIRDISRRMEYETQLKLAKEQAEQGSKAKSRFLATMSHEIRSPLNAVLGSVDLLLDS 525

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   LN +Q  Y      + T LL+ +NDILD + ++AG M L  S+     L+ +V Q 
Sbjct: 526 R---LNKEQRIYANTAKEAGTALLSTINDILDFSKIEAGQMLLEKSSFSAAKLVTQVLQI 582

Query: 658 IATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILK 711
           ++ K  +  I +   ++     S + D QRL Q+   ++ NA+ FS  G  +     +L+
Sbjct: 583 LSPKAQDKGITLASFVNCNVPESLIGDGQRLRQVLQNLVDNAIKFS-SGGCIAVEMWLLE 641

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769
           + +       +V + G  I E+   ++F  F    + H     G GLGL+I    I    
Sbjct: 642 SQQGKAQLCCTVTDQGIGISEEAQLTLFKEFSQVHDEHNTNYSGTGLGLAICAELITRME 701

Query: 770 GHVSISSSDEGVTTINC 786
           G +++ S     +  + 
Sbjct: 702 GSIAVRSEQGRGSCFSF 718


>gi|260900170|ref|ZP_05908565.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308110109|gb|EFO47649.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 632

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 24/300 (8%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--------------VRAERALTE 557
           + L   L+LLS +V ++S    P+  T+       +                  +  L  
Sbjct: 173 RLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEA 232

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +    A+  K+ F+  +S+E+R+P+  IIG   LL  +K   L+ +Q ++VE I  SS
Sbjct: 233 ERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTK---LDPQQKEFVEIIDNSS 289

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ +++DILD + V+AG ++L   T     LL++V      K  + N+++    D KL
Sbjct: 290 QSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKL 349

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPE 732
                 D  RL Q+ + +LSNA+ F+ +G   +L +  +         F V ++G  I +
Sbjct: 350 PAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAK 409

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  ++VF RF        R   G GLGL+I    +++ GG + ++S     +  +  IP 
Sbjct: 410 EHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTSELGLGSCFDFTIPL 469


>gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1964

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/270 (27%), Positives = 128/270 (47%), Gaps = 18/270 (6%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q         +  +A R+L EK E L      K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1221 QNEEVERKNAEIEQARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLAD 1280

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L  KQ +Y   I +S + LL L+NDILDLA +++G M +    + L ++ +++ +
Sbjct: 1281 NVENNLTPKQVEYAATIHSSGSDLLGLINDILDLAKIESGTMSVEIEQMQLAEVRHQLDR 1340

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
            +     H+  +  ++  D +L  +   D +RL Q+   +LSNA  F++KG  V L+    
Sbjct: 1341 AFRQIAHDKGLDFEINFDPRLPKAIYTDSKRLQQVLKNLLSNAFKFTAKG-QVSLEVEPA 1399

Query: 714  ----RDNGDFI--------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
                  + + +        FSV + G  I  +  + +F  F         Q  G GLGLS
Sbjct: 1400 YQGWSQDHEILNQAELVISFSVSDTGIGIAPEKQRLIFEAFQQADGTTSRQYGGTGLGLS 1459

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIP 789
            I      L GG +++ S     +T    +P
Sbjct: 1460 ISREIARLLGGEITVISRLGHGSTFTLYLP 1489


>gi|188991423|ref|YP_001903433.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733183|emb|CAP51381.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1146

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 126/821 (15%), Positives = 270/821 (32%), Gaps = 119/821 (14%)

Query: 66  CDQLSKYHSLLTENNCLT--IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH 123
             ++++    L   +     ++ D   + P + G           D  LL    W     
Sbjct: 190 HLRVNRCAFGLAAEDHSVMHVISDYVQDMPSLKGDFPLEAAQGLRDA-LLENRTWFTTDA 248

Query: 124 --YIKLSKATEKLRKEGQSFDLVAET-QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
                     E+ R  G    L     ++   +   G    +        ++ +   +A 
Sbjct: 249 MAPGAPDYVVEQYRHSGLRASLAIPLHKHGQLVAAIGVHQRAPRQWASTDIELVRLVVAR 308

Query: 181 ------TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
                      ++L+   +  + L D++  +++  D AG   + N  + + T        
Sbjct: 309 CWESMQRAKAQRQLAASEARLRRLADTVPQIIFIADPAGQPDYFNQRWYEYTGLNPDTEA 368

Query: 235 KAIGESRKL---FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFG-- 287
            A  +        +   +   ++ +       E       G  + +  + + V +  G  
Sbjct: 369 IAAWQQAHSAAGLRMSGQAWALALNGERAYEIECELRQHDGQTRWHLARALPVRDEHGRI 428

Query: 288 --EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE- 340
               G   D+      E  + +       +   +   I + D +    + N  + E    
Sbjct: 429 SEWIGTYTDIHDRRGFEHKLRESEARFRALCETVPAMIWMADVDGNCVYWNPQWYEFTGQ 488

Query: 341 -----IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL- 394
                +D  +      +D      R  +   + L+ +      + + +    ++  W + 
Sbjct: 489 GEEQALDQGWWNAMHPDDA----ARVRHAFEQALDARGAFIAEYRIRRHDGQYR--WCID 542

Query: 395 -------PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET-------- 439
                   +G+ L          G I    +++ +  +E    +   +            
Sbjct: 543 TASPHFGSDGRFL----------GHIGSLTDISDRKRIEDATASDRAILSLITTGAPLTV 592

Query: 440 -IDHLS------------EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +D ++              V V   + +      A       + +       I      
Sbjct: 593 VLDAIALSVEARGETPLYCAVMVLDEEHQTLQF--AAAPHLPRDYSGDFENAPIGPSGPP 650

Query: 487 CSR---------------------YYNESDGWDLFAAIITSFDDERKSLQGTLEL----- 520
           C+R                     +   S    + A  +T       ++ GTL +     
Sbjct: 651 CARSAHSGLQVICEDIANDPRFEDHRALSAAMGIAACCVTPILGSNGAVLGTLNIYYAQP 710

Query: 521 ----LSDSVLEYSIIPLPNAQTMLTFVNVT--DSVRAERALTEKNEALRKADEIKNSFVQ 574
               L +  +  S   L       T V+     S++AE A   + E       +K+ F+ 
Sbjct: 711 HLASLREQAMARSASHLAGIVIERTRVDAKLKASLQAETAARNQAEHA---SRVKDEFLA 767

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+ELR+PL  I+G++ L++        +K  + +  I  S+     +++D+LD++ + 
Sbjct: 768 TLSHELRTPLNAILGWSRLMQADAFEP--AKLGKGLVVIERSARAQTQIIDDLLDMSAIL 825

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSK 693
           +G ++L      +  L     + +        IR+++ +  +    F  D  RL Q+ + 
Sbjct: 826 SGKIRLQPEHFDIAGLARSTVELMQPTAQARQIRLELDAPLQGSLWFFGDAGRLQQVLTN 885

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           ++SNA+ F++    V +    +       V++ G  I  D    VF+RF        RR 
Sbjct: 886 LISNALKFTAPDGDVRVSLEVEEQRLRLCVRDTGIGIAADFLPHVFDRFRQADAGTTRRV 945

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPSK 791
            G+GLGLSI    I+LHGG +   S+ EG   T    +P +
Sbjct: 946 GGLGLGLSISRQLIDLHGGSLGAYSAGEGHGATFTVVLPFQ 986



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 87/296 (29%), Gaps = 36/296 (12%)

Query: 48  RNSLAKKVNETYSFLSEICDQLS--KYHSLLTENNCLTIVWDGKDETPEIIGQ-LHQRID 104
           R  +A+         ++     S  +   L      +  + D     P+   Q  ++   
Sbjct: 303 RLVVARCWESMQRAKAQRQLAASEARLRRLADTVPQIIFIAD-PAGQPDYFNQRWYEYTG 361

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI-----EGRV 159
           +      + +   W + H           LR  GQ++ L    +    I+      +G+ 
Sbjct: 362 LNPDTEAIAA---WQQAHSA-------AGLRMSGQAWALALNGERAYEIECELRQHDGQT 411

Query: 160 SGSCAFL--------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
               A          RI    G Y+++ +      KL    + F+ L +++  ++W  D 
Sbjct: 412 RWHLARALPVRDEHGRISEWIGTYTDIHDRRGFEHKLRESEARFRALCETVPAMIWMADV 471

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI---SSSALEKNFCETVST 268
            G+ ++ N  + + T             +     +  + R     +  A      E    
Sbjct: 472 DGNCVYWNPQWYEFTGQGEEQALDQGWWNAMHPDDAARVRHAFEQALDARGAFIAEYRIR 531

Query: 269 LEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
              G  +        +        G  G   D+S    + D       IL  +T  
Sbjct: 532 RHDGQYRWCIDTASPHFGSDGRFLGHIGSLTDISDRKRIEDATASDRAILSLITTG 587


>gi|159899975|ref|YP_001546222.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893014|gb|ABX06094.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 958

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 87/361 (24%), Positives = 163/361 (45%), Gaps = 35/361 (9%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
               +    I+ +S+G+ +   +G+I ++NPA  ++     +RL     +          
Sbjct: 628 EERTLLAAVIESVSDGILLTD-EGQIVVANPAAGAIAGVSNSRLVNQPLLT--------- 677

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                 + + A +    D E K +      +S+     +  PL N+      + + D   
Sbjct: 678 -----FFPMLAMLARREDHESKEIA-----ISNRYYAVNTAPLQNSSLGGQVIVLQDIT- 726

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
                       ++ D+IK+ FV  VS++L+SPLT I G+  L+    +G++N  Q   +
Sbjct: 727 ----------HFKELDQIKSRFVSMVSHDLKSPLTAIQGYAQLVADGHMGTVNEMQRDAL 776

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  ++  +  L++D+LDL  ++AG + ++     L  +L EV   +  +     I ++
Sbjct: 777 QAVVRNTGAMTALISDLLDLGKIEAG-IGISPQETDLAVVLREVIDELKLRAKMGQISVQ 835

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 L   VAD  R+ Q+F+ ILSNA+ ++  G  V ++A   +      ++++G  I
Sbjct: 836 PEIPPSLP-LVADPSRMRQVFTNILSNAIKYTPSGGQVQIRANNGDAKMHVQIQDSGLGI 894

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PED    +F RF            G GLGL+I +S ++ HGG + + S     TT N  +
Sbjct: 895 PEDSLPHIFERFYRVKRDIDSPIEGTGLGLAITKSIVDEHGGTIEVQSVIGEGTTFNVYL 954

Query: 789 P 789
           P
Sbjct: 955 P 955


>gi|39996404|ref|NP_952355.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983284|gb|AAR34678.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 835

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 8/243 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A   K+ F+  +S+E+R+P+  IIG   LL  +    L  +Q + ++  
Sbjct: 313 ELILARKDAEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVDT---PLTQEQRRLLDDS 369

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + ++  LL ++NDILDL+ V+A  ++L    + L   +  +++  A +     I + V  
Sbjct: 370 TTAAESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSV 429

Query: 674 -DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI 730
            +G       D  RL QI + +LSNA+ F+  G  V + A +       +F+V + G  I
Sbjct: 430 GEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGI 489

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +   +S+F  F        R   G GLGL+I +  + L GG +++ S      T +  +
Sbjct: 490 DKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCL 549

Query: 789 PSK 791
           P +
Sbjct: 550 PLE 552


>gi|117925825|ref|YP_866442.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609581|gb|ABK45036.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 801

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 160/380 (42%), Gaps = 17/380 (4%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVF--GPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           +                ++     + V    P+ R+ L N +F  L+      +    H 
Sbjct: 255 LQERRSLQQSESRFRTLVETSPIPMLVTRAAPNQRVALMNRSFTDLFGYTVADVPDIHHW 314

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG------TLELLSDSVLEYSIIPLP 534
             +A     Y    +   L+ A +     ++  +        T    +   +E  +  + 
Sbjct: 315 WPLAYPDPTY--RQEIQQLWQARVEEMSLKKTQIMHPVTANVTCNNGNIRFIEVHMSVID 372

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   ++ F ++T   +    L +  EA   A++ K  F+  +S+E+R+P+  ++G  ++L
Sbjct: 373 D-HALVIFQDLTHRKQESEELRQAKEAAEAANQAKGDFLAVMSHEIRTPMNVMLGMVEVL 431

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + S   +L+ +Q + +  +  +   LL L+N ILDL+ +DAG ++L    + L++L+ EV
Sbjct: 432 QES---TLDQEQQEQLHSVQKAGKNLLALINQILDLSKLDAGHLQLQPEALNLHELIKEV 488

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +A    E N+ +    D  +    +AD  RL QI   +L NA+ F+ KGS  I  + 
Sbjct: 489 VGLVAVLASEKNLLLSHQIDTSVPQWILADELRLRQILFNLLGNAIKFTEKGSVNITLSM 548

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       +++ G  +      ++F  F        RR  G GLGL++    + L  G 
Sbjct: 549 RDPQQLALVIRDTGIGVDPAHHHAIFEPFTQQDGTITRRFGGTGLGLTLSRRLVELMHGQ 608

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S     T     +P +
Sbjct: 609 IRMDSQLGCGTQFEILLPVE 628


>gi|210622340|ref|ZP_03293109.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275]
 gi|210154328|gb|EEA85334.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275]
          Length = 427

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 154/370 (41%), Gaps = 29/370 (7%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L       +  +S G+     +G I L N   + +    +  +  G +I     
Sbjct: 81  ELEYKNLQ--LRSILKSISNGILAIDIEGNILLINDEAKKMINCPKEVMVEGRNISFAIR 138

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTMLTFV 543
                       +L    I  F   +++ +  + L         + P  L N ++++   
Sbjct: 139 -----------NELILKQIMMFMGSKENEKTVINLDDGRFFRIKLDPVYLQNNKSIVIGS 187

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V     +ER          +A+ ++  FV +VS+EL++PLT+I GF + LK ++     
Sbjct: 188 IVNIEDISER---------VRAENMRKDFVANVSHELKTPLTSISGFAETLKLNENID-K 237

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +++++  I   +  L  L+ DIL L+ ++    +     I L  +   V+  +     
Sbjct: 238 ETRNRFLTIIDGEANRLRRLIEDILTLSFIENDKKE-EKEAINLYSVYRRVEDMLMISAK 296

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             NI +   +D  + S  A+   + QI   ++ NA+ ++ +   V +K   +  + +  V
Sbjct: 297 TKNIALACEADESI-SLQANADYVKQIILNLVDNAIKYTPENGAVNVKIFTEKENAVIKV 355

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP++    +F RF         +  G GLGL+I +  +   GG +S+ S  E  
Sbjct: 356 SDTGMGIPKEDQSRIFERFYRVDKARSREIGGTGLGLAITKHIVMNLGGTISVESELEKG 415

Query: 782 TTINCRIPSK 791
           +T   +IP K
Sbjct: 416 STFTVKIPIK 425


>gi|29346404|ref|NP_809907.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338300|gb|AAO76101.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 499

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 108/512 (21%), Positives = 210/512 (41%), Gaps = 37/512 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +  N Q  +  E+L  L   + IF+ +  +   NR  +    +  +  A  P    +L  
Sbjct: 1   MEENKQTLYNDELLDILPDGVIIFNISGEVIQLNRQALTELHVHSSVNAMMPLPTNILFK 60

Query: 359 LRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLH--VIVTSNPRGG---- 411
           L +             KE+I SV  +     + T+ L     +   V  T  P  G    
Sbjct: 61  LLNN------------KEDILSVILEKIRQGEQTYSLSEHTFMQEQVDYTQFPIRGDFAT 108

Query: 412 ---------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNP 461
                     ++ F N+TV++  E   NT ++       +     + F  D R  +    
Sbjct: 109 IKEDGNLKKILFFFRNITVELTQEYILNTALQRTRIYPWYYDINRSEFTLDNRYFEHLGI 168

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           +                H  +  A    +  +  G + F   +  F   R    GT E  
Sbjct: 169 SAGENNTLTMEEYVNMIHPDDRQAMADAFIVQLSGMETFDKSV-PFRLHRG--DGTWEWF 225

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S+E+R
Sbjct: 226 EGQSTYIANISGHPYRLVGICMSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIR 285

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++D+LDL+ +++  +K  
Sbjct: 286 TPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFT 345

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           ++   L  L+ +V++   T    + I I+ +   +      D  RL Q+ S  ++NA  F
Sbjct: 346 FTDCSLRSLMIDVEKE-QTMKPISEIEIRALLPNEDVYINTDATRLKQVISNFINNARKF 404

Query: 702 SSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           + KG      A  + D       V++ GS IP++  K +F+RF        ++G GLGLS
Sbjct: 405 TEKGYIHFGYAVDSVDASSVHVFVEDTGSGIPKECQKEIFDRFYKVDTF--KQGTGLGLS 462

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I ++ +    G +S+ S     +     +P +
Sbjct: 463 ICKTIVEHLQGDISVESEMGKGSRFIVTLPFE 494


>gi|332992814|gb|AEF02869.1| putative two-component member protein [Alteromonas sp. SN2]
          Length = 1109

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 198/520 (38%), Gaps = 47/520 (9%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           DVS     ++++     I      AI   D    ++  N +   +       L       
Sbjct: 260 DVSSRAIESERIQRA--ITDIAVDAIITVDSTGIIKTANPAVTAVTGYSPEEL------- 310

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT- 412
                +    K+    + K+   + F   KS  T +       G +  V++         
Sbjct: 311 -----IGQQGKILAPDDKKSIYSSDFFEQKSVPTEQII-----GTSREVVIVGKGGEYIP 360

Query: 413 ----------------IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA---VFGPD 453
                           +  F +L  +  +E             I ++  G+A   +  PD
Sbjct: 361 VRVGIGYTKVDGNALFVGFFSDLRKRKAMEDALRESEAKFRSFISNIP-GIAYRCLNEPD 419

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             +   + A   +     +            + C     +    ++      S +    +
Sbjct: 420 WPMVFISDAVSEITGHAADDFILPNPRITFGSLCHPDDLKRVETEVTDQNTFSIEYRIIN 479

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            +G +  +++  +                 ++T     E  L    E   +A   + +F+
Sbjct: 480 KKGDVRWVTEHGVHVLDEQGNTIYLDGFISDITARREMEEELKAAKERAEQAAAARTNFL 539

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  IIGF+DL+   K+   + +Q  ++  ++ S+  LL+L+NDILD A +
Sbjct: 540 ANMSHEIRTPMNAIIGFSDLMLAEKM---SPEQHGHLTTVNRSARSLLHLLNDILDSAKL 596

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFS 692
           D G + L+Y   ++ + ++ V  +   +     I ++V    ++  ++    +R+ Q+ +
Sbjct: 597 DKGKLDLDYRDFIIREEVDTVISTFWLEAKSKRISLEVQVGSEVREAYNGVPERIRQVLN 656

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
            ++ NA+ F+  GS V L+ + D+    F VK++G  +  +    VF+ F         +
Sbjct: 657 NLIGNAVKFTGDGSVV-LEVSSDSSFVYFKVKDSGIGMNSEQVNRVFDAFAQADASMSRK 715

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLG +I +  + L GG++   S     +T   R+P 
Sbjct: 716 YGGTGLGTTISKQLVELMGGNICAQSELGVGSTFTFRLPL 755


>gi|188583920|ref|YP_001927365.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347418|gb|ACB82830.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 798

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 91/518 (17%), Positives = 204/518 (39%), Gaps = 25/518 (4%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           G+  + +   K       +     +   L     I + +  L ++NR + +      A +
Sbjct: 3   GDITVTVQDGKVPATGPTMADFRNLADALPQLAWIAEADGNLVWYNRRWYDYTGTTPAEM 62

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIV 404
           A +              KL    + +       +   + E+ +DT+ L   +G+    + 
Sbjct: 63  ADH-----------GWRKLHHPDHLERAAARFAACIAAGESWQDTFPLRGKDGRYRWFLS 111

Query: 405 TSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            + P     G  +  +    ++T     +       +     +D  +  +      G + 
Sbjct: 112 LAEPVRNADGVIVRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWNTTAQGELM 171

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
              P + +     E        +  +         E     + A  +   +   +   G 
Sbjct: 172 PPQPRWAAYTGQGEEAYQGWGWVDAVHPDDRARAAEVWAECVEAVKVYEVEYRLRRYDGV 231

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              +    +          + +   +++T    AE A+ +   A   A+  K+ F+ ++S
Sbjct: 232 WRDMEVRGVPVLAEDGTIREWVGLNIDITARKEAEAAIEQARAAAEAANLAKSQFLANMS 291

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL+ +IG++++L         ++    +  I +++  LL L+ND+LD++ ++AG 
Sbjct: 292 HELRTPLSAVIGYSEMLGEELEDLGQAELLPDLRKIESAARHLLGLINDVLDISKIEAGR 351

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + L   +  +  L+ +V  +  + + +   R ++  +G LG+   D+ +L Q    ++ N
Sbjct: 352 LTLAAESFDVASLIEDVSAATQSLITKKRNRFRLDLEGDLGAMHQDQLKLRQSLINLIGN 411

Query: 698 AMDFSSKGSTV--ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           A  FS  G  V  + +   ++G+++ F+V + G  + ++    +F RF        R   
Sbjct: 412 AAKFSEDGEIVLSVRRVREEDGEWLSFAVSDTGIGLTQEQIGRLFERFSQADESTTRQFG 471

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           G GLGL+I  +FI   GG + + S+     T   R+P+
Sbjct: 472 GTGLGLAITRAFIERMGGTIGVESTFGAGATFTIRLPA 509



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK--EEIK 249
           ++ F+ L D+L  L W  +  G+++W N  +   T T                   E   
Sbjct: 21  MADFRNLADALPQLAWIAEADGNLVWYNRRWYDYTGTTPAEMADHGWRKLHHPDHLERAA 80

Query: 250 KRMISSSALEKNFCETVSTL-EHGNNKSYKIVR--VLNSFGEA----GIAIDVSKEITVN 302
            R  +  A  +++ +T     + G  + +  +   V N+ G      G   DV++     
Sbjct: 81  ARFAACIAAGESWQDTFPLRGKDGRYRWFLSLAEPVRNADGVIVRWYGTNTDVTETRLAQ 140

Query: 303 DQLTHTYEILHNLTVAIA 320
           D L H+ +    L  A A
Sbjct: 141 DALGHSEQRFRALVDASA 158


>gi|66816437|ref|XP_642228.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74856713|sp|Q54YH4|DHKB_DICDI RecName: Full=Hybrid signal transduction histidine kinase B
 gi|60470115|gb|EAL68095.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1969

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 92/393 (23%), Positives = 175/393 (44%), Gaps = 29/393 (7%)

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             I MF  +   VDL+       ++Q   +  +S    V   DG I  +NPAF S+++ + 
Sbjct: 807  VILMFYTILSSVDLKEIERKESRIQS--LFRISNEALVVHKDGLITDANPAFESMFQIKL 864

Query: 472  NRLSPGTH--IRNIAATCSRYYNES-----DGWDLFAAIITSFDDERKSLQGTLELLSDS 524
              L       I          +        D  D+     T  D   ++ Q  +     +
Sbjct: 865  QDLLYPIQSGIWEFLPALEGMFEPGASKLFDNPDMGVIETTGIDSSGRTFQVEVRTNKAT 924

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
               Y   P+ +  +++        + A+ AL +       A+E K  F+  VS+ELR+P+
Sbjct: 925  ---YDGEPV-DVISIIDITGRKQLMEADYALRK----AEAANEAKVIFLTTVSHELRTPI 976

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              ++   D+L+ +   +L+S Q +++  I  S   LL+L+NDILD + ++AG M++    
Sbjct: 977  NGVLASADILERT---TLDSTQKEFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYD 1033

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
              +  +L+   + ++  ++E  + + +  D  +   V  D++R+ QI    LSN++ F++
Sbjct: 1034 FSILKMLDNSIRIVSKNIYEKGLDLCIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFTN 1093

Query: 704  KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGL 756
             G  +I++   ++ D       F V+++G  I  +    +F  F         + +G GL
Sbjct: 1094 HG-QIIIRVKLESDDSTHSLIKFDVEDSGIGIKTEHLNQLFASFSQIDSGNSRKYQGTGL 1152

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLSI +    + GG V + S     +T +  IP
Sbjct: 1153 GLSISKRLCKMMGGDVKVKSEFGVGSTFSFTIP 1185



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 13/147 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
               +  + +    +      A+ +  ++  +   N +F  +++I L  L   P    + 
Sbjct: 819 DLKEIERKESRIQSLFRISNEALVVH-KDGLITDANPAFESMFQIKLQDLLY-PIQSGIW 876

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG----- 411
           EFL +   + E    K +      V +++          +G+T  V V +N         
Sbjct: 877 EFLPALEGMFEPGASKLFDNPDMGVIETTGIDS------SGRTFQVEVRTNKATYDGEPV 930

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGE 438
            +    ++T +  L      L K +  
Sbjct: 931 DVISIIDITGRKQLMEADYALRKAEAA 957


>gi|299146759|ref|ZP_07039827.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517250|gb|EFI41131.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 869

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 211/505 (41%), Gaps = 25/505 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---LAFLATNPSNDE 354
           +  + +Q      + H++   +  +D + ++ F NRS +++  +                
Sbjct: 373 QNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNRSLLQMLHLPYESGGRFYEGMMAGS 432

Query: 355 LLEFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +   +     +K+ +Q+  K     I       E H D +   +G+ + +        
Sbjct: 433 IFKIYYNGQDILHKMLKQVASKGESVKIPQGAFMKEVHSDKYFPVSGEIVPIRSKDT-IT 491

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLS--NPAFRSLW 467
           G      N++ +   +  ++  V            E      P G +K    + +  ++ 
Sbjct: 492 GMALSARNISNEEMQKRFFDMAVDESSIYPWQFDMETNCFIFPQGFLKRLGYDESVTTIS 551

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + E +R      ++ I+   +R     D          + + E +  +    +++    +
Sbjct: 552 RDEMDRTIHPDDLKEISPLFNRALTGEDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQD 611

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      +    ++     AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I
Sbjct: 612 ------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAI 665

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF+DLL  +  G  + + +Q++  I+ +  +LL L+NDILDL+ +++G M+  ++   L
Sbjct: 666 VGFSDLLSDTS-GFTSEEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNL 724

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL  V  S    M    + + + + +        D  RL Q+ + +++NA  F+S G 
Sbjct: 725 PLLLKTVHDSQRLNMPP-GVELVLRMPESDKIYLTTDNVRLQQVVNNLINNAAKFTSSG- 782

Query: 707 TVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            +      D   G     V++ G  I E+  + +F RF    +  Q  G GLGLSI ++ 
Sbjct: 783 FITFGYEDDEVPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTI 840

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I    G +S++S     T    R+P
Sbjct: 841 IERLNGTISVTSEVGKGTRFTVRLP 865


>gi|254492365|ref|ZP_05105537.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxidans DMS010]
 gi|224462257|gb|EEF78534.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxydans DMS010]
          Length = 994

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 164/385 (42%), Gaps = 25/385 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ Q  +   +    +      D  + G+A +  +      +    +L+   +     G 
Sbjct: 329 VSEQRAI-VDFQNSQQRLQLAADAGNMGLAEWNLEEGKLYWDDRMLALYGYTQGTFDDGM 387

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSV--LEYSIIPLPN 535
                 A   +  +  D  ++   + T+   ++   LQ  + L S  +  +  SI+   N
Sbjct: 388 ------AAWQQRVHPEDQAEVIKQVETARQFKQHFDLQFRIVLPSKEIRHIAASIVVERN 441

Query: 536 A-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                 + +    ++++  + E  L  + +    A+  +  F+ ++S+E+R+P+  ++G 
Sbjct: 442 RTGQAVRMVGFHYDISEHKQVEAILKTERDDAESANRSRGEFLANMSHEIRTPINGVMGA 501

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +LL  +    L++ Q   +     S+  LL ++NDILDL+ +++G +++    + L + 
Sbjct: 502 MNLLADT---PLSASQHNLLNISKRSAESLLGIINDILDLSKIESGKLEIIEEEVALVNT 558

Query: 651 LNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
           L +V + ++ K    +I +   +      S   D  RL Q+ + +L+NA+ F+ +GS   
Sbjct: 559 LCDVARLLSAKAESKHIELLCPAHYLDEVSVKVDGLRLRQVLTNLLNNAIKFTEQGSVKL 618

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
              +L    D     F+V + G  I  D    +F RF        RR  G GLGLSI + 
Sbjct: 619 SVDVLSQTSDKLKLRFNVVDTGQGIAADQQALLFQRFQQVDSSLTRREGGSGLGLSISKQ 678

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            + L GG + + S     +     +
Sbjct: 679 LVELMGGTIGVESELGIGSRFWFEL 703


>gi|220929310|ref|YP_002506219.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999638|gb|ACL76239.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 508

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 130/261 (49%), Gaps = 4/261 (1%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           II   + Q  L   +  +  +   +     E L++ +E++  F+ +VS+ELR+P+T+I G
Sbjct: 241 IIAGGDFQKRLVVSSQDEIGQLAESFNNMVEDLQRLEELRRGFIANVSHELRTPMTSIRG 300

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F + +    +     KQ  Y+  +   +  L  LVND+LDLA +++G + L+     +N+
Sbjct: 301 FIEGILDGTIPP--EKQRGYLTIVRDETNRLNRLVNDLLDLARMESGELTLSMKPFDINE 358

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+      + T +   N++I+   D      +AD+  + ++   +L NA+ FS++   +I
Sbjct: 359 LIRICVIKLETLITSKNLQIEANFDVDSMMVLADKDSIERVIINLLHNAVKFSNENGKII 418

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINL 767
           ++ A++      SVK+NG  I  D  K +++RF  +       + G GLGL+IV++ +  
Sbjct: 419 VETAKNKEKVFISVKDNGIGIDSDDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNILTE 478

Query: 768 HGGHVSISSSDEGVTTINCRI 788
           H   + + S     T     +
Sbjct: 479 HKQDILLESDVGKGTKFTFTL 499


>gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2]
 gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2]
          Length = 648

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 164/372 (44%), Gaps = 30/372 (8%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           Q   +D LS GV +   +  I+  N        T     S  +    +  +    Y +  
Sbjct: 7   QYAVLDQLSIGVFIVDAEFNIQFWN--------TWMANSSQLSAENVVGQSLFNLYPQLI 58

Query: 496 GWDLFAAIITSFDDERKSLQGTL------------ELLSDSVLEYSIIPLPNAQTMLTFV 543
              L  A+I S + +  S+   +            + L    +      +  + +++  +
Sbjct: 59  NSRLNHALIASKEQKLPSVLSRVFNASPLPLFNQAKQLIKQSITVKPASMCESCSIIQVI 118

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+++V  E+AL ++    ++A+  K++F+ ++S+E+R+PL  +IG  +L+       L+
Sbjct: 119 DVSNAVAREKALEKQVLERQRAEAAKSAFLANMSHEIRTPLNGVIGMLELVADE---PLS 175

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K  Q+++  S S+  LL ++NDILD + ++AG + ++     L     ++  S     +
Sbjct: 176 DKLQQFLQIASNSAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDIIASFIPAAN 235

Query: 664 ENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718
           +  I +   S   +     AD+QR+ QI   +LSNA+ F+ +G  V+     K       
Sbjct: 236 KKAISLIFDSSHLETTLVRADKQRVRQILVNLLSNAIKFTEQGEVVVEVYLQKIDSQTAQ 295

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +  V + G  I   +   +F  F  +     RR  G GLGL+I +   +L GG +++SS
Sbjct: 296 LVCKVLDTGIGIEAHVIAKLFEPFQQSDSSISRRFGGTGLGLAIAKQLCHLMGGELTLSS 355

Query: 777 SDEGVTTINCRI 788
                +     I
Sbjct: 356 KVGKGSCFEFEI 367


>gi|322417553|ref|YP_004196776.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320123940|gb|ADW11500.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 762

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 118/583 (20%), Positives = 225/583 (38%), Gaps = 49/583 (8%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
             N  +     Q+  G   ++   +    + SS         T+S       +  ++ R 
Sbjct: 198 LNNRPSLPAELQEVAGRDVEVTITQRGLGIASSLPRPLRDSSTLSPRIVDVLERGEVYRG 257

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI--FDQNRYLQFHN---RSFV- 336
               G          E  ++  L    E + +++VA+A   F   +     N    +FV 
Sbjct: 258 EALIGSRNY------ETVIDPILNSRGEFVGSISVAVATERFKHTKRENLQNILASAFVG 311

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPE-QLNWKTW--KENIFSVYKSS-----ETH 388
            L    LAFLA+      L +   SA K+ E  LN +    +++   +  SS     +  
Sbjct: 312 ILCSFGLAFLASRHLTGPLRQLAASARKIEEGDLNQRVEGSQDDEVGMLASSFNNMVQAL 371

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           K+   + N +T  +   +    G +          +  +     +      +  L+EGV 
Sbjct: 372 KERDSIINKKTGDLQELNEQLEGMV---------DERTSALAMEMGRLEAVLTSLAEGVV 422

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           V   + R+ L NPA + L++   +R+  G  I  +               L   I     
Sbjct: 423 VTDLNNRVVLFNPAAQQLFEMVPHRV-IGQPIEQVCELVG-------FTPLLERIRELGQ 474

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            ER              L   + PL + +     + ++                ++ D +
Sbjct: 475 PERGGGSKEELTAKGKRLHVYLSPLSDEEGNFAGIVLSIR---------DVTVEQQVDRM 525

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  VS+EL++PLT+I G   LL  ++   L   + Q +     ++  L+ L+++IL
Sbjct: 526 KTEFISTVSHELKTPLTSIKGSLQLLL-TRSKWLTDTERQLLTVCFRNTQRLIRLISEIL 584

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ +++G M   +  + + +L     + +       +I I       L     D  RL+
Sbjct: 585 DISGIESGGMVFKFKPVSIGELTVYAVEEMKPYAMGRDITIVNTVGEHLPMVYGDSDRLI 644

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-- 746
           Q+ + +LSNA+ FS +G  V++ A ++    + SV + G  I       +F +F      
Sbjct: 645 QVITNLLSNAVKFSPEGKVVMVSAEQEGNYVVVSVGDKGRVIQWSDRDKLFKKFQQIECQ 704

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RG+  G GLGL+I +  +  H G +  +++ E   T +  +P
Sbjct: 705 ERGKVGGTGLGLAICKEIVERHHGRIFYTAAQERGNTFSFTVP 747


>gi|326318684|ref|YP_004236356.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375520|gb|ADX47789.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 1160

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 3/260 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT          +RA+ AL++K   L +A + K+ F+ ++S+ELR+PL + +    LL
Sbjct: 440 EEQTQQLEYQKQQLLRAQDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKLL 499

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +K G+L  +Q +Y E I  +   LL L+NDILDLA ++AG   ++   + +   +  +
Sbjct: 500 ADNKGGNLTDEQVRYAETIHGAGNDLLTLINDILDLAKIEAGQATVDIEPVNVARAVQSI 559

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + +     E N+    + +  +   +  D QRL QI   +LSNA+ F+ +G   +  AA
Sbjct: 560 VEPLRPLAREKNLAFSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTERGEVALRVAA 619

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
           + +G   FSV++ G  IP+   K +F  F         +  G GLGLSI      L GG 
Sbjct: 620 QPDGRVAFSVRDTGIGIPDHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGS 679

Query: 772 VSISSSDEGVTTINCRIPSK 791
           VS+ S+    +     +P +
Sbjct: 680 VSVQSTSGQGSVFTLVLPLQ 699


>gi|170748577|ref|YP_001754837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655099|gb|ACB24154.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 796

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 97/512 (18%), Positives = 204/512 (39%), Gaps = 40/512 (7%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT-------NPSN- 352
            +    +  E L  L     I + +  + ++N+ + +     L  +         +P + 
Sbjct: 12  TDADYRNLAETLPQLAW---IAEADGTIIWYNQRWYDYTGTSLDEMRGWGWRTVHHPDHV 68

Query: 353 DELLEFLRSA---NKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQTLHVIVTSNP 408
             + E  R+A    +  E       ++  +  + S    H+D     +G+ L    T+  
Sbjct: 69  AAVTERYRAAITLGRSWEDTFPLRGRDGSYRWFLSKALPHRDE----SGRILRWYGTNT- 123

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
                    ++T +  +E +     +     +D  +  +      G +      + +   
Sbjct: 124 ---------DITGRRAVEERLRHSEQRFRALVDASAAVIWNTDAAGELMPPQVRWSTYTG 174

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E        +  +      +  ++    + A      +   +   G    +    +  
Sbjct: 175 QTEEAYQGWGWLDAVHPDDRGHAADAWAACVEARATYEVEYRLRRYDGVWRAMEVRGVPV 234

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                   + + T V+VT+   AE A+    +A   A+  K+ F+ ++S+ELR+PL+ +I
Sbjct: 235 LAEDGSLREWVGTCVDVTERKEAEEAVERARQAAEAANRAKSQFIANMSHELRTPLSAVI 294

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++++L         +     +  I A++  LL+L+ND+LD++ ++AG M  +  T  ++
Sbjct: 295 GYSEMLGEELEDIGQAALLPDLRKIEAAARHLLSLINDVLDISKIEAGRMTASAETFTVS 354

Query: 649 DLLNEVKQSIATKMHENNIRIKVIS----DGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           DLL +V  S  + + +   R  + +       LGS   D+ ++ Q    ++ NA  F+ +
Sbjct: 355 DLLRDVSDSTGSLVEKKGNRFVLDTGAAGTADLGSMHQDQTKIRQCLLNLIGNAAKFTER 414

Query: 705 GSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           G T+ L   R   +      F+V + G  + E+    +F RFV       R   G GLGL
Sbjct: 415 G-TITLTVRRHREEGADWLSFAVADTGIGLTEEQIGRLFERFVQADDSTTRQFGGTGLGL 473

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I  +F    GG + ++S+     T   R+P+
Sbjct: 474 AITRAFCRTMGGDIGVASTPGAGATFTIRLPA 505



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 76/249 (30%), Gaps = 15/249 (6%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK--K 250
           + ++ L ++L  L W  +  G I+W N  +   T T     +     +           +
Sbjct: 14  ADYRNLAETLPQLAWIAEADGTIIWYNQRWYDYTGTSLDEMRGWGWRTVHHPDHVAAVTE 73

Query: 251 RMISSSALEKNFCETVSTL-EHGNNKSYKIVRVLNSFGEA------GIAIDVSKEITVND 303
           R  ++  L +++ +T       G+ + +    + +           G   D++    V +
Sbjct: 74  RYRAAITLGRSWEDTFPLRGRDGSYRWFLSKALPHRDESGRILRWYGTNTDITGRRAVEE 133

Query: 304 QLTHTYEILHNL--TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
           +L H+ +    L    A  I++ +   +         W                L+ +  
Sbjct: 134 RLRHSEQRFRALVDASAAVIWNTDAAGELMPPQVR--WSTYTGQTEEAYQGWGWLDAVHP 191

Query: 362 ANKLPEQLNWKT--WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
            ++      W         + V      +   W     + + V+         +    ++
Sbjct: 192 DDRGHAADAWAACVEARATYEVEYRLRRYDGVWRAMEVRGVPVLAEDGSLREWVGTCVDV 251

Query: 420 TVQVDLETK 428
           T + + E  
Sbjct: 252 TERKEAEEA 260



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 9/148 (6%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-----DILWANIS 221
           RIL   G  +++       ++L +    F+ L D+   ++W+ D AG      + W+  +
Sbjct: 114 RILRWYGTNTDITGRRAVEERLRHSEQRFRALVDASAAVIWNTDAAGELMPPQVRWSTYT 173

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
            +     +G  +  A+    +    +     + + A  +                 + V 
Sbjct: 174 GQTEEAYQGWGWLDAVHPDDRGHAADAWAACVEARATYEVEYRLRRYDGVWRAMEVRGVP 233

Query: 282 VLNSFGE----AGIAIDVSKEITVNDQL 305
           VL   G      G  +DV++     + +
Sbjct: 234 VLAEDGSLREWVGTCVDVTERKEAEEAV 261


>gi|317154359|ref|YP_004122407.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944610|gb|ADU63661.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 764

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 135/319 (42%), Gaps = 15/319 (4%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            I        R         L  A +   D  R +++ +  L++            N   
Sbjct: 301 PILRCVHGLERMARGERDVVLPEARLKELDAIRSAVERSGSLMAQLAERTRETQATNE-- 358

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                 +      ER L    E    AD  K  F+  +S+E+R+P+  I+G  DL+  + 
Sbjct: 359 -ALKAEMEVRRETERELALAKERAEAADRAKTDFLAGMSHEIRTPMNTILGMADLMLET- 416

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                  Q QY+E   +S  +LL ++ND+LDL+ ++AG ++L    + + D LN  ++ +
Sbjct: 417 --DPTPVQRQYIEVFQSSGAMLLGIINDVLDLSKIEAGEVRLETVPVDMADFLNRTREIV 474

Query: 659 ATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
           A +  +  +  ++  +D     F+ D  RL Q+   ++ N + F+  G TV L   +   
Sbjct: 475 AGRAAQKGLAFRIEQADHAPRRFLGDPVRLRQVLVNLIDNGIKFTESG-TVRLAVGQAAD 533

Query: 716 -NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
             G   F+V + G  I  +  + +F RF        R   G GLGL+I    + L GG +
Sbjct: 534 PPGRLTFAVTDTGIGIAPESQEQIFQRFTQADASTTRKYGGTGLGLAISRRLVELMGGEI 593

Query: 773 SISSSDEGVTTINCR--IP 789
            + S+    +T +    +P
Sbjct: 594 RLESAPGQGSTFSFTVDLP 612


>gi|256828151|ref|YP_003156879.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577327|gb|ACU88463.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 612

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 159/370 (42%), Gaps = 28/370 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K           ++ + +G+ +F  + ++   NPA   ++            + +    
Sbjct: 255 EKVIAEKNKSEAVLESIEDGLVIFDLELKVAGINPAAWRIFDL--------PPVEDPGLR 306

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C     +S   DL    + +         G    + D   E  +I   +A+    ++   
Sbjct: 307 CGDIIPDSRLCDLIRDTVET---------GWPPTMPD---EQRVISFQHAEGAAHYLFSI 354

Query: 547 DSVR-AERALT------EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
             +R  ER L+      +    L++ +++K+ FV   S+ELR+PLT++    DLL     
Sbjct: 355 TVIRGIERDLSGVVLLLKDITRLKQVEQLKSDFVMAASHELRTPLTSLGMSVDLLLEHAS 414

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L  K  + +         + +LV+D+LDL+ ++AG +++ +  + +      ++    
Sbjct: 415 HNLAEKDRELLLAAHEEVHRMKSLVSDLLDLSKIEAGRIEMEFEDVPVATFFEHMQSVFK 474

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           ++M    +       G L    AD  ++  + S ++SNA+ + ++G  V L A +     
Sbjct: 475 SQMELKEVAFVSGIQGDLPLVRADANKIAWVLSNLVSNALRYVNRGGCVALMAQQFGAHV 534

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             SVK++G  IPE+    +F++FV    + +  G GLGL+I +  +  HGG + + S   
Sbjct: 535 HLSVKDDGLGIPEEYQARIFHKFVQVKGQ-EAGGSGLGLAICKEIVRAHGGTIWVESVPG 593

Query: 780 GVTTINCRIP 789
             +T    +P
Sbjct: 594 RGSTFTFTLP 603



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 51/426 (11%), Positives = 131/426 (30%), Gaps = 64/426 (15%)

Query: 13  GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSE------IC 66
           G  +   F   +     I  + L      IL    R+ LA +         +      + 
Sbjct: 10  GYGLSFAFMGLVVALAVINLVALGKATDAILSENYRSILAAENMVDALERQDSGTLLVLM 69

Query: 67  DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK 126
            ++ +  +L  +N  + + W G+ +           I I      L + E  + +  Y +
Sbjct: 70  GEVEEGTALFQKNEAIFLEWLGRAK---------DNITISGEADLLSAIE--VDYASYQQ 118

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           ++ +   L+ +                      SG   + R++    +    A  +L+  
Sbjct: 119 VAASLAALQAD----------------------SGGLTYRRMIFPMFMQVREACISLRN- 155

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
              N  +++    D+        +  G  +              ++  + I    + F E
Sbjct: 156 --INEETMYAASVDAKKV---AHNAIGSTVLVASLALVVALIFSMILAERIVHPIRRFME 210

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
             +      SA + +    V   +  +  + +  ++    G    A+++ K I    +  
Sbjct: 211 ASRHI----SAGDYDVQVPVGGSDELSRLASEFNQMATQVGRYN-AMNIEKVIA---EKN 262

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL-----ATNPSNDELLEFLRS 361
            +  +L ++   + IFD    +   N +   ++++               +  L + +R 
Sbjct: 263 KSEAVLESIEDGLVIFDLELKVAGINPAAWRIFDLPPVEDPGLRCGDIIPDSRLCDLIRD 322

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
             +          +  I   +     H    +L +   +  I       G + + +++T 
Sbjct: 323 TVETGWPPTMPDEQRVISFQHAEGAAH----YLFSITVIRGIER--DLSGVVLLLKDITR 376

Query: 422 QVDLET 427
              +E 
Sbjct: 377 LKQVEQ 382


>gi|254424116|ref|ZP_05037834.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191605|gb|EDX86569.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 534

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 90/390 (23%), Positives = 165/390 (42%), Gaps = 40/390 (10%)

Query: 420 TVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPG 477
           T+++  E        +   ++ +     +AV    D      NP+F  L    +  +   
Sbjct: 162 TLRLQQEIDNRRRAEETFKKSFNASPSPIAVTRLSDDTFIAVNPSFLRLSGYSQPEIMGK 221

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T           +Y  +           + + E K+ QG L ++  S+ +  +   P A 
Sbjct: 222 TTAELAMWQDQSHYQAAISQVSLNDSFDNEELEYKTRQGDLRIVLASIKKIVLDGEPCA- 280

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    ++T+  R E                 N F+  VS+ELR+P+ ++ G  DLL T 
Sbjct: 281 -LTIINDITERKRLE-----------------NEFISVVSHELRTPMHSLAGALDLLSTG 322

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +LG L  +  Q +   + ++  L+ LVNDILDL  + +G M +N S   + +L+ +  +S
Sbjct: 323 ELGVLTEQGQQILSVATTNAERLIRLVNDILDLERLKSGKMSVNRSNCNIANLVTQAVES 382

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +        ++++V S     +   D  R+LQ  + +LSNA+ FS  G TV+L    D  
Sbjct: 383 MQAMADNAQVQLQVQSMSVPVTVDCD--RILQTLTNLLSNAIKFSPAGGTVLLTVELDKP 440

Query: 717 --------------GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
                              ++ + G  IP +  +++F RF  V  +   ++ G GLGL+I
Sbjct: 441 TLEEPASSNTLQTVPQLHITLSDQGRGIPFEQLETIFERFQQVDASDSRRKGGTGLGLAI 500

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  HGG +   S+    +T +  +P+
Sbjct: 501 CRQILQQHGGRIWAESTLGQGSTFHVCLPT 530


>gi|270296316|ref|ZP_06202516.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270273720|gb|EFA19582.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 1037

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 96/446 (21%), Positives = 196/446 (43%), Gaps = 24/446 (5%)

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-N 418
           R +   PE +N      NI    K S T    +   +     ++V ++  G  + +F  +
Sbjct: 455 RGSELFPESMNEFLHFMNIALKEKRSVTFPYYYKKID-TFYDIVVKASDNGEYMHVFCVD 513

Query: 419 LTVQVDLETKYNTLVKVQGETID---------HLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            T     + +  +  +     +D         +L     +   +  I+LSN A   +   
Sbjct: 514 STELHHTQIQLRSTNRKLSMALDVANIVPWKWNLRTHTILCDVNKPIELSNNA--GIMDD 571

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           E+  +    +   I         ++    +   I    ++ R           D V   +
Sbjct: 572 EQLSVPDSQYFSKIHKEDLEKVKQAYTDLIEGRIQKVKEEYRVINHADGHKHFDWVEAQA 631

Query: 530 IIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +   +        + + + +T+  + E  L        +++++K++F+ ++S+E+R+PL
Sbjct: 632 AVETYDENNKPLTLVGSSLVITERKKMETELVSAKNRAEESNKLKSAFLANMSHEIRTPL 691

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ +L +++       + +YV  I  ++T+LL L++DILDL+ ++AG M+   + 
Sbjct: 692 NAIVGFSGILASTEEEEE---KQEYVSIIENNNTLLLQLISDILDLSKIEAGTMEFIDTD 748

Query: 645 IVLNDLLNEVKQSIATKMH-ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             LN ++ E++  +  K+  E N+ +            ++R RL Q+   +++NA+ F+ 
Sbjct: 749 FELNKVMRELESLLCLKLSPEKNVTLSFEPGLPECHIHSERNRLSQLVINLVTNAIKFTQ 808

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +GS       +D+    F V + G  IPED  +S+F RFV   +  Q  G GLGLSI + 
Sbjct: 809 EGSIRFGYKLQDDKMLYFYVSDTGCGIPEDKQESIFGRFVKLNNFAQ--GTGLGLSICQM 866

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +   GG++ ++S     +T    +P
Sbjct: 867 LVQHMGGNIGLTSKPGEGSTFWFTLP 892


>gi|255526346|ref|ZP_05393260.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|255509923|gb|EET86249.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
          Length = 441

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 168/376 (44%), Gaps = 23/376 (6%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSL--------WKTEENRLSPGTHIRNIAATCS 488
            + ID++  GV +      I L N A   +              ++ P     +I     
Sbjct: 32  NKIIDNVPIGVIILDSKFNIILWNSALEKMSSIYNKTVIGKNFFQIFPKVFTEDINIKIK 91

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLEL--------LSDSVL----EYSIIPLPNA 536
              +  +   L   ++ +F   +      +++        +S+ ++    + +++     
Sbjct: 92  NITSTKETIILDNLLVNNFFSSKHYKYCNIKISALENKSSISNGIMLTFEDCTVLQNIRY 151

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +       V   ++  +        +++ D+++  F  ++S++LR+PL  I+    L+K+
Sbjct: 152 ELNKECSVVKTLIKKIKEDKLHLSKMKEIDKLRTDFFTNISHDLRTPLNIILSALQLMKS 211

Query: 597 SKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               + N ++S +Y + I  +S  LL L+N+++D+  +D+G  ++      + +++ ++ 
Sbjct: 212 FNNLNCNEEKSFKYFKSIKQNSLRLLKLINNLIDITKIDSGYFEIRTGNYNIVNIVEDIT 271

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S+A  +   +I +   ++ +      D  ++ +I   ++SNA+ F++ G  + +    +
Sbjct: 272 LSVAQYVENKSITLTFDTNTEEKFMACDPDKVERIMLNLISNAIKFTNPGGHIFINMFDE 331

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +   +  V++ G  IPE+    +F RF  +  A      G G+GLS+V+S + +HGG +S
Sbjct: 332 DDYIVICVEDTGIGIPEEDLDIIFERFRQSNRASARNYTGSGIGLSLVKSLVEMHGGKIS 391

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    T    ++P
Sbjct: 392 VRSTYGKGTKFVIKLP 407


>gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016]
 gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 1072

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 160/384 (41%), Gaps = 28/384 (7%)

Query: 422 QVDLETK---YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN------ 472
           + ++E +        ++    ID     VA+      I L N   ++++           
Sbjct: 147 EKEIELRTADLKASEELSRTIIDGAPSSVAIVNESLFISLWNSTAQNVYGYSSEEATGEN 206

Query: 473 --RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L   +    ++   S      +  D+       F+ E  + +G +  +    L  SI
Sbjct: 207 ILTLLNMSLPDALSHVLSAPLALQNQPDVEGGF---FEVETTTKEGHMVPID---LGVSI 260

Query: 531 IPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             L  A     F+    S +A E+ L +      +A E+K+ F+ ++S+E+R+P+  IIG
Sbjct: 261 FELNGACHAALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIG 320

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            + L   +    L  KQ  YV  I +S+T+LL ++NDILD + ++AG + +  +   L+D
Sbjct: 321 MSHLALKT---DLTPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDD 377

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           + + V      K  E  + +      +     + D  RL QI   +++N++ F+ KG   
Sbjct: 378 VFHNVSMVTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEIT 437

Query: 709 I----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
           +    ++   D  +  F + + G  + +   KS+F  F        R   G GLGLSI  
Sbjct: 438 VSVHHIRNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICR 497

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             + L GG + + S     +    
Sbjct: 498 RLVELMGGQIRVESEAGKGSHFIF 521


>gi|304412836|ref|ZP_07394436.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|304348799|gb|EFM13217.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
          Length = 1629

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 115/657 (17%), Positives = 245/657 (37%), Gaps = 63/657 (9%)

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVW--HRDQAGDILWANISYKKNTETEGIVFQKAI 237
            E T +   L   +   + L D+++  +     D  G IL  N ++       G   ++ +
Sbjct: 478  EVTKRTNALQQALLENQTLLDTINQQLLYSATDPNGVILEVNDNF---CHVSGYSRKQLL 534

Query: 238  GESRKLFKEEIKKRMISSS-----ALEKNFCETV-STLEHGNNKSYKIV--RVLNSFGE- 288
            GE+  +            +         ++   + +   H   K +  V   V N  G  
Sbjct: 535  GETHAILNSGEHDAAFWRTMWTQIKSGLSWHGEICNRDRHQMLKWFDTVIGPVFNENGNI 594

Query: 289  ---AGIAIDVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELWE 340
                 +  D+++   V  +      +L N+  A     I   D+   +   NR   +L  
Sbjct: 595  ERFVALRTDITERKLVQIEKNKLGSLLTNVLDAASEMSIIATDKKGVITIFNRGAEQLLG 654

Query: 341  IDLAFL--ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS----SETHKDTWHL 394
                 +   + P+   L E + + +        +  +     VYK+    SET   T+  
Sbjct: 655  YAAVDMIGLSTPAPLHLPEEVAARSAELSSEYGEDIQGFDVFVYKARTLGSETRTWTYVR 714

Query: 395  PNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
             +     V ++            G + +  +++  +  +    T      +  +    G+
Sbjct: 715  KDTSQCQVSLSVTAMLDNVGEIIGYLGIAIDISQVLQQQKALITASNHLSKAAEVAKLGI 774

Query: 448  AVFGPDGRIKLSNPAFRSLW---------KTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
              +         N    +++                    H  +I    ++     +  D
Sbjct: 775  WSWDLRDNSLEWNERMFAIYDQPLSLQDIGLTYEHWRMRIHSDDIDFAEAKLKAAVEEKD 834

Query: 499  LFAAI--ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
             +  I  +   D   + +Q   ++  D   + + +       +   +++T+  + E  L 
Sbjct: 835  QYDPIFRVVRTDGTIRYVQAGAQIERDVTGQVTKV-------IGINLDITEQRQLEETLR 887

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            E       A+  K++F+ ++S+E+R+P+  ++G   L++ +   S++ +Q  YV     +
Sbjct: 888  EAKHEADAANAAKSAFLANMSHEIRTPMNAVLGMLQLMQHT---SMSVQQQDYVTKTQTA 944

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            +  LL L+NDILD + +DAG + L+     +  L+ ++   ++      N+ +    D  
Sbjct: 945  AKSLLGLLNDILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNHGNKNVEVMFDLDPA 1004

Query: 677  LG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIP 731
            L    +AD+ RL QI   +  NA+ F+  G  TV ++  R   +      S+ + G  I 
Sbjct: 1005 LPAWLLADQLRLQQILVNLAGNALKFTRHGQVTVTMECLRHEANTVTVQISISDTGIGIS 1064

Query: 732  EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            E+  + +F  F        RR  G GLGL+I +  + L GG ++++S     +    
Sbjct: 1065 EEQIERIFTGFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVTSRVGVGSRFWF 1121



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 95/300 (31%), Gaps = 40/300 (13%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           A  +I + ++  V  +      +L +   AI  +D    +   N+   E++      +  
Sbjct: 329 AIWSISLQRKQQVQLEQARRASMLEHSLDAIISYDLTGNITSWNQGAEEIFGYTQTDVIG 388

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           + S D +   +  +  L EQ+ +      +FS  K+      T    NG  +    TS P
Sbjct: 389 HSSCDLI---IPPSIVLEEQVLF----AEVFS-GKTVLNQISTHQRQNGSHVSTSTTSLP 440

Query: 409 -------RGGTIWMFENLTVQVDLET---------------KYNTLVKVQGE---TIDHL 443
                    G      ++T Q + E                + N L +   E    +D +
Sbjct: 441 IYDEDSAIVGLSQTIRDITTQQEAERYILSLNARLEQEVTKRTNALQQALLENQTLLDTI 500

Query: 444 SEGVA--VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           ++ +      P+G I   N  F  +      +L   TH     A  +   +++  W    
Sbjct: 501 NQQLLYSATDPNGVILEVNDNFCHVSGYSRKQLLGETH-----AILNSGEHDAAFWRTMW 555

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             I S       +            +  I P+ N    +       +   ER L +  + 
Sbjct: 556 TQIKSGLSWHGEICNRDRHQMLKWFDTVIGPVFNENGNIERFVALRTDITERKLVQIEKN 615



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 91/298 (30%), Gaps = 35/298 (11%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANISYKKNT 226
           I     + +++ E  L   + +   S+   + D+  +  +   D+ G I   N   ++  
Sbjct: 594 IERFVALRTDITERKLVQIEKNKLGSLLTNVLDAASEMSIIATDKKGVITIFNRGAEQLL 653

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN-------FCETVSTLEHGNNKSYKI 279
               +        +     EE+  R    S+           F     TL         +
Sbjct: 654 GYAAVDMIGLSTPAPLHLPEEVAARSAELSSEYGEDIQGFDVFVYKARTLGSETRTWTYV 713

Query: 280 VR-----------------VLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVA 318
            +                 V    G  GIAID+S+ +     L     H  +      + 
Sbjct: 714 RKDTSQCQVSLSVTAMLDNVGEIIGYLGIAIDISQVLQQQKALITASNHLSKAAEVAKLG 773

Query: 319 IAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW--- 374
           I  +D ++  L+  N     +++  L+      + +     + S +    +   K     
Sbjct: 774 IWSWDLRDNSLE-WNERMFAIYDQPLSLQDIGLTYEHWRMRIHSDDIDFAEAKLKAAVEE 832

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
           K+    +++   T     ++  G  +   VT       I +  ++T Q  LE      
Sbjct: 833 KDQYDPIFRVVRTDGTIRYVQAGAQIERDVTGQ-VTKVIGINLDITEQRQLEETLREA 889


>gi|307578718|gb|ADN62687.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 510

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 181/468 (38%), Gaps = 44/468 (9%)

Query: 351 SNDELLEFLRSANKLPE------QLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVI 403
           +N      LR  + + E        +   + +    V  S +  H +   L    ++ V+
Sbjct: 29  TNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARALRRWYSVEVM 88

Query: 404 VTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               P G  +  +F ++T    +E +            D L   V VF   G ++  N A
Sbjct: 89  RVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTA 148

Query: 463 FRSLWKTEE-----NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +   +  +         S   H  ++     +            A++ +     +   G 
Sbjct: 149 YGEFFGVDLSSGTLPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA-----RRYDG- 202

Query: 518 LELLSDSVLEYSIIPL--PNAQTMLTFVNVTD-SVRAERAL---------TEKNEALRKA 565
                   +E S  P   P+   +    +  D + R E  L                   
Sbjct: 203 ----QWRWIEMSATPRYSPDGHFIGLTGSSQDVTERLEIELAREQLLKSERAARNEAENM 258

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNL 623
             +K+ F+  +S+ELR+PLT I+G+++LL       +  +   Y  +  I++S+ +   L
Sbjct: 259 ARLKDEFLSTLSHELRTPLTTILGWSELLLQR----IEEQHPCYKGLSVIASSAKVQKRL 314

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LDL+++  G M+L    + L + + EV       +     R+ + +       + D
Sbjct: 315 ISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGD 374

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QIF  +LSNA+ F+     + ++   D   F  SV ++G  I  +    +F+RF 
Sbjct: 375 ATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAEFLPHLFSRFR 434

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
                  R   G+GLGL+IV+S + +HGG+V  +S            +
Sbjct: 435 QADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 482



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G     N S+ ++   + +V +   G       E IK+    + + ++   E  +    
Sbjct: 23  DGIFRLTNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARAL--- 79

Query: 272 GNNKSY--KIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD 323
              + Y  +++RV    G     + +D+++   +  +L  +    + L   +     +FD
Sbjct: 80  --RRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFD 137

Query: 324 QNRYLQFHNRSFVELWEIDLA-------FLATNPSNDELLEF-LRSANKLPEQLNWKTWK 375
               ++F N ++ E + +DL+        +  +P +  + EF L +A K    L      
Sbjct: 138 AQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA 197

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                 ++  E      + P+G  +          G     +++T ++++E     L+K 
Sbjct: 198 RRYDGQWRWIEMSATPRYSPDGHFI----------GLTGSSQDVTERLEIELAREQLLKS 247

Query: 436 QGET 439
           +   
Sbjct: 248 ERAA 251



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGI 231
           ++ E     ++L+     F +L D L   VW  D  G + + N +Y        +     
Sbjct: 104 DITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTLP 163

Query: 232 VFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
            +   +     L F+ ++   + + SAL             G  +  ++          +
Sbjct: 164 EWSMVLHPEDVLIFEFKLSAALKTQSALRALVRARRY---DGQWRWIEMSATPRYSPDGH 220

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G  G + DV++ + +        +
Sbjct: 221 FIGLTGSSQDVTERLEIELAREQLLK 246


>gi|301309591|ref|ZP_07215533.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
 gi|300832680|gb|EFK63308.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
          Length = 768

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 23/381 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   +       +     ++   +  A        + SN  F       ++   P   
Sbjct: 393 SHKKQAQESLRKEKEFLSLALES-GDIFA-------FRYSNGVFEFDHDFYKSLDMPIKP 444

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
           I +     S +  + + +     ++ +    RK  +             E+      N Q
Sbjct: 445 ITSTQFQESIHPEDREDFIQHKHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYAQAKNGQ 504

Query: 538 --------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                        +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+G
Sbjct: 505 DSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVG 564

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++LL +    S N +  ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+
Sbjct: 565 FSELLTSDMEISPNER-DEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNE 623

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
           LL+ + ++    M +  + +K+          AD  RL Q+ + +++NA  F+++G   +
Sbjct: 624 LLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILI 682

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                +D      SV + G  IP D    VF RF       Q  G GLGL+I +  I   
Sbjct: 683 KYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLDEFAQ--GTGLGLAICQIIIEHF 740

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG++++ S +   +T    +P
Sbjct: 741 GGYITLESKEGEGSTFIVTLP 761


>gi|262383487|ref|ZP_06076623.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294385|gb|EEY82317.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 768

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 23/381 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   +       +     ++   +  A        + SN  F       ++   P   
Sbjct: 393 SHKKQAQESLRKEKEFLSLALES-GDIFA-------FRYSNGVFEFDHDFYKSLDMPIKP 444

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
           I +     S +  + + +     ++ +    RK  +             E+      N Q
Sbjct: 445 ITSTQFQESIHPEDREDFIQHKHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYAQAKNGQ 504

Query: 538 --------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                        +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+G
Sbjct: 505 DSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVG 564

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++LL +    S N +  ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+
Sbjct: 565 FSELLTSDMEISPNER-DEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNE 623

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
           LL+ + ++    M +  + +K+          AD  RL Q+ + +++NA  F+++G   +
Sbjct: 624 LLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILI 682

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                +D      SV + G  IP D    VF RF       Q  G GLGL+I +  I   
Sbjct: 683 KYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLDEFAQ--GTGLGLAICQIIIEHF 740

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG++++ S +   +T    +P
Sbjct: 741 GGYITLESKEGEGSTFIVTLP 761


>gi|256841370|ref|ZP_05546877.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737213|gb|EEU50540.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 768

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 23/381 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   +       +     ++   +  A        + SN  F       ++   P   
Sbjct: 393 SHKKQAQESLRKEKEFLSLALES-GDIFA-------FRYSNGVFEFDHDFYKSLDMPIKP 444

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
           I +     S +  + + +     ++ +    RK  +             E+      N Q
Sbjct: 445 ITSTQFQESIHPEDREDFIQHKHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYAQAKNGQ 504

Query: 538 --------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                        +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+G
Sbjct: 505 DSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVG 564

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++LL +    S N +  ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+
Sbjct: 565 FSELLTSDMEISPNER-DEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNE 623

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
           LL+ + ++    M +  + +K+          AD  RL Q+ + +++NA  F+++G   +
Sbjct: 624 LLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILI 682

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                +D      SV + G  IP D    VF RF       Q  G GLGL+I +  I   
Sbjct: 683 KYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLDEFAQ--GTGLGLAICQIIIEHF 740

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG++++ S +   +T    +P
Sbjct: 741 GGYITLESKEGEGSTFIVTLP 761


>gi|255014411|ref|ZP_05286537.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 768

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 23/381 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   +       +     ++   +  A        + SN  F       ++   P   
Sbjct: 393 SHKKQAQESLRKEKEFLSLALES-GDIFA-------FRYSNGVFEFDHDFYKSLDMPIKP 444

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
           I +     S +  + + +     ++ +    RK  +             E+      N Q
Sbjct: 445 ITSTQFQESIHPEDREDFIQHKHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYAQAKNGQ 504

Query: 538 --------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                        +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+G
Sbjct: 505 DSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVG 564

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++LL +    S N +  ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+
Sbjct: 565 FSELLTSDMEISPNER-DEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNE 623

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
           LL+ + ++    M +  + +K+          AD  RL Q+ + +++NA  F+++G   +
Sbjct: 624 LLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILI 682

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                +D      SV + G  IP D    VF RF       Q  G GLGL+I +  I   
Sbjct: 683 KYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLDEFAQ--GTGLGLAICQIIIEHF 740

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG++++ S +   +T    +P
Sbjct: 741 GGYITLESKEGEGSTFIVTLP 761


>gi|225181177|ref|ZP_03734623.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168146|gb|EEG76951.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 603

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 160/396 (40%), Gaps = 27/396 (6%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKL 458
            + + S    G +  MF  L+ Q+D   +  +  K      ++H+++G+     DG++  
Sbjct: 216 RITIHSQDEIGRLGQMFNYLSRQLDATLREISSEKGKVEAILNHMTDGIVALNRDGQVLH 275

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGT 517
            NP    L    E        +  + A            DL A + T   + R+  LQ  
Sbjct: 276 VNPTAHRLLDLNEESEPTAEVLGQLVAPV----------DLAAILNTGRQESREIMLQPH 325

Query: 518 LELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +L+  S + +     + + + +   + V   V  ER L            I+  FV +V
Sbjct: 326 QQLIVASYVPFHTQDEITDTEFLSGVLIVLHDVTKERELI----------RIQQEFVANV 375

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT +  +T+ L    +         ++  +   +  ++ LV D+L L+ +D  
Sbjct: 376 SHELRTPLTTMKSYTETLLGGAMYE-PETCLSFLSTMEKETERMVRLVKDLLALSQLDYR 434

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +      + LN+L++EV   +  K  E    + V           DR ++ Q+   ++ 
Sbjct: 435 QVAWRKEKLPLNELVSEVVNELRVKFQEEPRHVTVELPETTVWHCFDRDKMKQVLINVIQ 494

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           N+  ++++   + +         +  V ++G  IP +  K VF+RF            G 
Sbjct: 495 NSFKYTAEHGLIRIALEVAEDQAVIHVADDGIGIPPEDVKRVFDRFYRVDKARSRDFGGT 554

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGLSI    +  HGG +++ S  E  T     +P 
Sbjct: 555 GLGLSIAREIVEAHGGSITVCSEPEKGTQFTISLPL 590


>gi|171059183|ref|YP_001791532.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776628|gb|ACB34767.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 957

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 160/382 (41%), Gaps = 19/382 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T +++   +     +     I D+L   V+ +  D R +  N  F          L   +
Sbjct: 133 TAELEKAMQARGDAEAFVRAIADNLPARVSFWDVDLRCRFVNQRFCHDEGRPREALIGAS 192

Query: 479 HIR-----NIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSII 531
            I       I    +R      G    F  I+   D   ++L    + ++ D  L    +
Sbjct: 193 LIDVFGAGRIGEVEARLRMAMQGQAQHFERIVPGLDGTTRTLWVHHIPVIRDGRL--RGV 250

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                       +     +    L +  +    A+  K++F+ ++S+E+R+P+  IIG T
Sbjct: 251 VAMGTDISEIKRDEIRLRQLNTELAQARDHAEAANRAKSTFLANMSHEIRTPMNAIIGLT 310

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+ +      ++Q   +  ++ ++  LL ++ND+LDL+ +++G ++L    I L++LL
Sbjct: 311 QLLRRTHRDPAGAEQ---LAKVADAADHLLQIINDVLDLSKIESGKVELESIDIDLDELL 367

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-- 709
           +     ++++ HE  + + + +D    +   D  RL Q    +L+NA+ F+  GS ++  
Sbjct: 368 SRTLSLVSSRAHEKGLELVLDTDHLPRTLRGDPTRLSQALLNLLTNAIKFTDHGSVILRG 427

Query: 710 --LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
             L+   D     FSV++ G  +  D  +++F  F        RR  G GLGL+I     
Sbjct: 428 QKLQDGADGVHVRFSVQDTGIGVEADQVEALFLAFEQGDSSTTRRHGGTGLGLAITRHLA 487

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
            L GG     S     +T    
Sbjct: 488 QLMGGESGADSVAGQGSTFWFT 509



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 95/317 (29%), Gaps = 27/317 (8%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           LF E  ++ M +     +    + + L+   +   ++V    +  E  +      E  V 
Sbjct: 92  LFGEAQEQLMRALRKDRQALDGSQAELQRHRDHLQELVDARTAELEKAMQARGDAEAFVR 151

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                   I  NL   ++ +D +   +F N+ F          L        L++   + 
Sbjct: 152 A-------IADNLPARVSFWDVDLRCRFVNQRFCHDEGRPREALIG----ASLIDVFGAG 200

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
                +   +   +     ++      D            ++      G + M  +++  
Sbjct: 201 RIGEVEARLRMAMQGQAQHFERIVPGLDGTTRTLWVHHIPVIRDGRLRGVVAMGTDISEI 260

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IR 481
              E +   L     +  DH                 N A  +      + +    + I 
Sbjct: 261 KRDEIRLRQLNTELAQARDHAEAA-------------NRAKSTFLANMSHEIRTPMNAII 307

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTM 539
            +     R + +  G +  A +  + D   + +   L+L  +    +E   I +   + +
Sbjct: 308 GLTQLLRRTHRDPAGAEQLAKVADAADHLLQIINDVLDLSKIESGKVELESIDIDLDELL 367

Query: 540 LTFVNVTDSVRAERALT 556
              +++  S   E+ L 
Sbjct: 368 SRTLSLVSSRAHEKGLE 384



 Score = 41.1 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 13/154 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + +  AE     +   +  +  + + D+L   V   D      + N  +      EG   
Sbjct: 129 VDARTAELEKAMQARGDAEAFVRAIADNLPARVSFWDVDLRCRFVNQRF---CHDEGRPR 185

Query: 234 QKAIGESR-KLFKE----EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL----- 283
           +  IG S   +F      E++ R+  +   +    E +     G  ++  +  +      
Sbjct: 186 EALIGASLIDVFGAGRIGEVEARLRMAMQGQAQHFERIVPGLDGTTRTLWVHHIPVIRDG 245

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
              G   +  D+S+      +L      L     
Sbjct: 246 RLRGVVAMGTDISEIKRDEIRLRQLNTELAQARD 279


>gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 962

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 120/244 (49%), Gaps = 12/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  IIGFT+LL  S    L  +Q  ++  I
Sbjct: 277 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS---PLPRQQRDHLSTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VI 672
             SS ILL ++NDILD + ++AG + L+     L D++ EV   +A   H  N+ +  ++
Sbjct: 334 RKSSEILLTIINDILDFSKIEAGKLILDRIPFQLRDIVEEVMVMLAPAAHSKNLDLVPLV 393

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNN 726
            +    + + D  R+ Q+ + +++NA+ F+  G  V+  +  +            S+ ++
Sbjct: 394 YNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEEEDKESNRITLRLSITDS 453

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +     +S+FN F         Q  G GLGL+I +  +   GG + + S     +T 
Sbjct: 454 GVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGSTF 513

Query: 785 NCRI 788
              +
Sbjct: 514 WFTL 517


>gi|301309870|ref|ZP_07215809.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300831444|gb|EFK62075.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 622

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 113/630 (17%), Positives = 234/630 (37%), Gaps = 49/630 (7%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANIS----YKKNTETEGIVFQKAIGESRKLFKEEI 248
           S  +++ +     +   D+   ++    +    Y            +A+    K + +  
Sbjct: 12  SGLEMIMEKSPDTIVLVDRNLTLVKVISAKDDYYHYLANNCIGKQPQALFPDGKNYDQYE 71

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL---NSFGEAGIAIDVSKEITVNDQL 305
             R       E+      S       K+Y  +      N         DVS   T N+  
Sbjct: 72  IYRAAVKRVFEEQVKVDFSFEVSFEGKNYYYLSQASLFNEELVIVYTRDVSSLKTENNLQ 131

Query: 306 THTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSND---------- 353
                IL  L + + + D +      + N    E+  I+   +  +   +          
Sbjct: 132 ELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGIETREIEGHDDFEVNYNALMTAE 191

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           E LE   +  K      +K   ++    Y+  E  K    L NG+ L            +
Sbjct: 192 ERLETDMNVIKTGLTARFKGKVKSASGDYRDIEIAKYPISLNNGKPL-----------VL 240

Query: 414 WMFENLTVQVDLETKYNT--LVKVQGETIDHLSEGVAVFGPDGR------IKLSNPAFRS 465
            ++ ++T ++  E       ++      I  +        PD        +   N    +
Sbjct: 241 ALWRDITSELATENTLRRTRILTKMALRISDIRTCSIFIDPDSTHNFKDSVVTLND--WN 298

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
               +   +S G  I         +Y+          I  +  + R    G  E +   V
Sbjct: 299 TMSEDMIEVSWGQFISRAHPDDQEHYHNMFTRLCRGEISEARIEARMLFPGKKEYVWREV 358

Query: 526 LEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                      +    +    N+ +    E +L E       AD++K+ ++  +S+E+R+
Sbjct: 359 FATVYERDEKGRPSVILGCSTNIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRT 418

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I GF++L+        + ++  Y + I  ++ +L+ L+NDILD++ ++A  +K+ Y
Sbjct: 419 PLNAITGFSELMA---FADTDEERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKITY 475

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + +++L++ +  S   ++    +++ +        F  D  RLLQ+ + +++NA+  +
Sbjct: 476 EQLDVSELMDTIYASAKLRVP-GGVKLVLEKGADHHMFGTDSMRLLQLINNLVNNAIKNT 534

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +GS  +    + +    F V++ G  I +D  K VF RFV         G+GLGL+I +
Sbjct: 535 KEGSITMGYTIQPDNQLRFYVRDTGIGIDKDKLKDVFGRFVKINDY--MEGIGLGLAICK 592

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +   GG + ++S     +  +  +PS E
Sbjct: 593 GLVVKMGGSIHVTSELGVGSEFSFILPSHE 622


>gi|298505413|gb|ADI84136.1| sensor histidine kinase response regulator, HAMP domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 835

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 8/243 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A   K+ F+  +S+E+R+P+  IIG   LL  +    L  +Q + ++  
Sbjct: 313 ELILARKDAEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVDT---PLTQEQRRLLDDS 369

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + ++  LL ++NDILDL+ V+A  ++L    + L   +  +++  A +     I + V  
Sbjct: 370 TTAAESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSV 429

Query: 674 -DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI 730
            +G       D  RL QI + +LSNA+ F+  G  V + A +       +F+V + G  I
Sbjct: 430 GEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGI 489

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +   +S+F  F        R   G GLGL+I +  + L GG +++ S      T +  +
Sbjct: 490 DKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCL 549

Query: 789 PSK 791
           P +
Sbjct: 550 PLE 552


>gi|119490047|ref|ZP_01622671.1| two-component sensor kinase [Lyngbya sp. PCC 8106]
 gi|119454199|gb|EAW35351.1| two-component sensor kinase [Lyngbya sp. PCC 8106]
          Length = 641

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 13/294 (4%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           D E K +    E LS ++ +  +      Q       VT+  +A   L +   A + A+ 
Sbjct: 198 DSETKFIAKITEHLSIAIYQAQLHTQLQQQKYTLERRVTERTQA---LHDALLAAQSANR 254

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKT------SKLGSLNSKQSQYVEYISASSTILL 621
            K+ F+  +S+ELR+PLT +IG +  L                KQ +Y+  I  S   LL
Sbjct: 255 AKSEFLATMSHELRTPLTCVIGISATLLRLYSNGAGIKQISREKQQEYLHKIHDSGEHLL 314

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI--KVISDGKLGS 679
            L+NDIL+L+ V+AG   L  S   L  L  +   S   +  E+N+ +   +        
Sbjct: 315 ELINDILELSEVEAGKTILQISEFSLTKLAQKTLYSFRERAQEHNVLLISDIQVKPDEDL 374

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F+AD++R+ ++   +LSNA+ F+ +   V L+   +    IF +++ G  I E+    +F
Sbjct: 375 FIADQRRVEKVLFNLLSNAIKFTPESGQVTLRVGVNKNTAIFQIQDTGIGISEEQQPLLF 434

Query: 740 NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F         Q  G GLGL++ +  + LHGG + ++S++   +T    IP +
Sbjct: 435 EKFQQLDSSYRRQYSGTGLGLALTKQLVELHGGVIKLTSTENVGSTFTVHIPIQ 488


>gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ]
 gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ]
          Length = 735

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 124/244 (50%), Gaps = 12/244 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  L    E    A + K+ F+ ++S+E+R+P+  IIG   L   ++   L+ +Q  Y+E
Sbjct: 339 QEELRAAKETAEAATQAKSEFLANMSHEIRTPMNAIIGLAQLTLETR---LDPQQKSYLE 395

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  +ST LL+++NDILD + ++A  +++ +  + L D+L +      T   E  +++ +
Sbjct: 396 RLRNASTALLSIINDILDFSKIEAHKIEIAHLELNLADILQDGVTLFQTAAKEKGLKLSL 455

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFS--VKN 725
                +    + D  RL Q+ + ++SNA+ F+ +GS V ++A    RD+   I    V +
Sbjct: 456 EIADDIPQHLIGDPLRLGQVLNNLISNAVKFTERGS-VTVRAELADRDDQQVIIRILVSD 514

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I ++  + +F  F         +  G GLGLSI  + + L GG +++SS  +  +T
Sbjct: 515 TGIGIDKEQSERLFQPFTQADGSIVRRFGGTGLGLSIARNLVELMGGSITLSSCPDQGST 574

Query: 784 INCR 787
               
Sbjct: 575 FAFT 578


>gi|310828525|ref|YP_003960882.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612]
 gi|308740259|gb|ADO37919.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612]
          Length = 913

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 105/621 (16%), Positives = 232/621 (37%), Gaps = 53/621 (8%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQ----------KAIGESRKLFKEEIKKRMISSSA 257
              +   +LWAN  + ++       +Q          +A  E   + K  +     S   
Sbjct: 29  LLSEELPVLWANTEFYRSIGYTEETYQAQFSNLRHYYQAYPEDFYMLKNALFLAFDSGKT 88

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA------GIAIDVSKEITVNDQLTHTYEI 311
             K  C     +  G    +++   +   G+        + ++V+  +++ +Q  H +++
Sbjct: 89  RAKAVCRM--PVLEGEA-WFQVTATMAEAGQEDEPVINAVFVEVTDIVSLQEQRMHYFKL 145

Query: 312 LHNLTVA-IAIFDQNRY-LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           + +  V  I I D + Y L + N+   E  +  +  +      + +      +   P   
Sbjct: 146 MMDEYVGNIYISDMSTYELLYVNKVSCETLQQPMEKIIGRKCYEVIQGR---STPCPFCT 202

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           N +  +++ +     +     T+ + N                I +  ++      E K 
Sbjct: 203 NDRLTEDSFYEWEFFNPILDRTFMIKNQIVNWY-----GHKARIELSHDM---YSAEYKL 254

Query: 430 NTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPA-FRSLWKTEENRLSPGTH--IRNIAA 485
               + +   +  +  G A     D +  L   A F  +    + +     H     I  
Sbjct: 255 AKKDREREALLRTIPGGFARLDARDFKTVLWYGADFLDMIGYTKEQFEKELHSQCTYIYP 314

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS------DSVLEYSIIPLPNAQTM 539
                  ++          T F+   K   G   +L+      D +  +  IP   +  +
Sbjct: 315 DDHARVKKTIAEHQATGQNTVFEVRIKKRSGEQRILTITMCYVDGLDSWDGIPSFYSVGL 374

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                  +  R   AL +  +A+R A+  K  F+  +S+++R+P+  I+G T + + +  
Sbjct: 375 DITEERQEQQRQRIALEDAYQAVRVANSAKTDFLSSMSHDIRTPMNAIMGMTAIARVNLE 434

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                K    +  I+ SS  LL+L+N++LD++ +++G + L++    L +L+ E      
Sbjct: 435 SP--EKVGDCLNKINVSSRHLLSLINEVLDMSKIESGKLDLSFEAAELPELIQEASDMCK 492

Query: 660 TKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KA 712
             + E     +VI    +    + D  RL Q+F  +LSNA+ ++ +G  + L        
Sbjct: 493 ALLTEKKHDFRVIVGQVQHEKVITDGDRLQQVFLNLLSNAIKYTPEGGKITLLINEKPSI 552

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGG 770
               G + F   +NG  + ++    +F  F         + +G GLG++I E+ +++  G
Sbjct: 553 IPKKGQYEFIFTDNGIGMEQEFLTQIFEPFSRAEDSRISKVQGTGLGMAITENIVHMMNG 612

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + S     +     +P +
Sbjct: 613 TIDVKSEPGKGSQFIVTVPLE 633


>gi|237714981|ref|ZP_04545462.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409069|ref|ZP_06085614.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229444814|gb|EEO50605.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353280|gb|EEZ02375.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 869

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 212/505 (41%), Gaps = 25/505 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---LAFLATNPSNDE 354
           +  + +Q      + H++   +  +D + ++ F NRS +++  +                
Sbjct: 373 QNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNRSLLQMLHLPYEAGGRFYEGMMAGS 432

Query: 355 LLEFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +   +     +K+ +Q+  K     I       E H D +   +G+ + +  + +   
Sbjct: 433 IFKIYYNGQDILHKMLKQVASKGESVKIPQGAFMKEVHSDKYFPVSGEIVPIR-SKDAIT 491

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLS--NPAFRSLW 467
           G      N++ +   +  ++  V            E      P G +K    + +  ++ 
Sbjct: 492 GMALSARNISDEEMQKRFFDMAVDESSIYPWQFDMETNCFIFPQGFLKRLGYDESVTTIL 551

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + E +R      ++ I    +R     D          + + E +  +    +++    +
Sbjct: 552 RDEMDRTIHPDDLKEIRPLFNRALTGEDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQD 611

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      +    ++     AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I
Sbjct: 612 ------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAI 665

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF+DLL  +  G  + + +Q++  I+ +  +LL L+NDILDL+ +++G M+  ++   L
Sbjct: 666 VGFSDLLSDTS-GFTSEEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNL 724

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL  V  S    M    + + + + +        D  RL Q+ + +++NA  F+S G 
Sbjct: 725 PLLLKTVHDSQRLNMPP-GVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG- 782

Query: 707 TVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            +      D   G     V++ G  I E+  + +F RF    +  Q  G GLGLSI ++ 
Sbjct: 783 FITFGYEDDEVPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTI 840

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I    G +S++S     T    R+P
Sbjct: 841 IERLNGTISVTSEVGKGTRFTVRLP 865


>gi|114776327|ref|ZP_01451372.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553157|gb|EAU55555.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 1180

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 129/247 (52%), Gaps = 8/247 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  L   NE L +A E KN F+ + S+ELR+PL  IIGF++L+   ++G LNSKQ +YV
Sbjct: 472 REVELEIINEELVQASEAKNQFLANTSHELRTPLNAIIGFSELMGNPRMGPLNSKQHRYV 531

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I +S   LL ++ND+LD++ ++AG+M +        ++ N+V   + +      +++ 
Sbjct: 532 ENIHSSGKRLLKIINDLLDISRIEAGMMVVEEQVFPPREVANQVMAEMTSLASLKGLKLT 591

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFIFSVK 724
           + +    G  +  DR +L Q+   ++ NA+ F+ +G +V L       +    + +  VK
Sbjct: 592 MDACPDEGQLIRTDRGKLHQMMVNLVGNAIKFTPEGGSVTLSMEINVVSARQRELVVHVK 651

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP    + +F  FV           G GLGL++    + + GG VS  S +   +
Sbjct: 652 DNGIGIPAADLEKIFEPFVQVHGGLARAYEGTGLGLALTRRQVRMLGGDVSGESREGDGS 711

Query: 783 TINCRIP 789
           T   R+P
Sbjct: 712 TFIIRLP 718


>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 962

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 101/553 (18%), Positives = 199/553 (35%), Gaps = 80/553 (14%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            ++          + +  + + +  ++  +   + S+ EL   +   L   P+ +  L+ 
Sbjct: 258 RSLELSREQFRRAIADAPIPVIMHAEDGKVLQVSGSWTELTGYE---LEDIPTLEAWLDR 314

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----NGQT-LHVIVTSNP----R 409
                   +  +    +  + S   +       W +P    +G++    I  S+P     
Sbjct: 315 AV------QGPDGDAARAAV-SALCTGNRQNIRWDMPILTRDGRSRYWNISASSPGSLQD 367

Query: 410 GG--TIWMFENLTVQVDLETKYNT----------------LVKVQGETIDHLSEGVA--- 448
           G    + M  ++T + + E                           + +D L + V    
Sbjct: 368 GRRFVVCMAVDITERRESEAALQRGNLRLDLLASTASRLLESDAPQQLVDELCQKVMSYL 427

Query: 449 --------VFGPDGRIKLSN-------PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
                   +   +      N        +  SL   E      G   R+     +   N 
Sbjct: 428 SCDTYFNFLVDEEAGCLRLNSCAGISAESAESLQYLEYGVAICGCAARDACRIVAE--NI 485

Query: 494 SDGWDLFAAIITSFD---------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
            +  D    ++ S                + GTL   + +   +S   L   + +   V+
Sbjct: 486 PEVPDPRTELVKSLGITAYACHPLMSHGRVLGTLSFGTRTRKAFSEDDLSLMKAVADQVS 545

Query: 545 V-TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +  +    E  L +  +A   A   K+ F+ ++S+ELR+P+T ++G  DL   S   +  
Sbjct: 546 IAMERKTTEEKLQQAKQAAEAASRTKSQFLANMSHELRTPMTGVLGMLDLALQS---TSE 602

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +QS Y+     S   LL ++NDILDL+ V+AG   L+     L   + E     A +  
Sbjct: 603 LQQSDYIRTAYRSGRSLLQILNDILDLSKVEAGKFSLDQKPFSLRSCVTEAADIAAPEAK 662

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
              I +++     L    V D+ RL Q+ + ++ NA+ F+ +G  V ++    +      
Sbjct: 663 RKGIELELDLAQDLPWHVVGDQVRLRQVLTNLVGNAVKFTERG-RVTVQVEVADKTAEAE 721

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               F V + G  IP+D    +F  F  V +++     G GLGL+I +  +   GG +  
Sbjct: 722 LLLRFRVSDTGIGIPQDKRHLLFQAFSQVDDSNTRNYGGTGLGLAISKEIVQRMGGEIGF 781

Query: 775 SSSDEGVTTINCR 787
            S +   +T    
Sbjct: 782 ESGEGVGSTFTFT 794



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 15/167 (8%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           +    R + + GI  + A    +  +LS     F+         V    + G +L  + S
Sbjct: 237 AFLVYRAIVVTGIE-DPASLLFRSLELSRE--QFRRAIADAPIPVIMHAEDGKVLQVSGS 293

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKS 276
           + + T  E            +  +        ++     +   +N    +  L       
Sbjct: 294 WTELTGYELEDIPTLEAWLDRAVQGPDGDAARAAVSALCTGNRQNIRWDMPILTRDGRSR 353

Query: 277 YKIVRVLNSFG-------EAGIAIDVSKEITVNDQLTHTYEILHNLT 316
           Y  +   +             +A+D+++       L      L  L 
Sbjct: 354 YWNISASSPGSLQDGRRFVVCMAVDITERRESEAALQRGNLRLDLLA 400


>gi|146309326|ref|YP_001189791.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145577527|gb|ABP87059.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 640

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 198/513 (38%), Gaps = 59/513 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +     +Q      +L N   A+ + D    +Q  N    +L       L          
Sbjct: 163 QARRQAEQSAMHQAMLDNAGSAVLVLDPQGRVQRSNPEARQLLGYSAEALNEQH------ 216

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNPRG----- 410
                   LP+ L      E +           +    P +GQ+L V +  +P       
Sbjct: 217 --------LPQLLEEPGQFERLCLACARGPQSAEGRLRPRHGQSLPVRLNLSPIRAEGQA 268

Query: 411 --GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSL 466
             G + +  +L+ + +   +   +       +        +   DG      S+   R +
Sbjct: 269 LQGYLLVANDLSQRDEARQRLQRIAAQLPGMVYQ-----YLLRADGSSCFPYSSAGIRDI 323

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLELL 521
           +      +      ++ A+  +R + E      +     A  + ++  E + L     L+
Sbjct: 324 YGCTPEEVC-----QDAASAFARLHPEDTAPVREAIADSAQRLATWHQEYRVLHPERGLI 378

Query: 522 SDSVLEYSIIP--LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
               +E    P  LP  + +        S R            ++ ++++N FV  VS+E
Sbjct: 379 ---WVEGRAAPQRLPGGEVLWHGFISDISER------------KRGEQLQNEFVSTVSHE 423

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PLT I G   L+    LG++     Q +E   ++S  L +L++D+LD+  + AG M+
Sbjct: 424 LRTPLTAIAGSLGLINGGALGAVPENMQQMLEIAQSNSQRLRHLIDDLLDMDKLVAGKMR 483

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            +   + L  LL +             +R+++++ G     +AD +R+ Q+ + +L+NA 
Sbjct: 484 FDLQPLALRPLLQQALHDNQPYAERQQVRLQLLA-GSDCQVLADAKRVEQVLANLLANAA 542

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            FSS G  V L AA  +G    SV++ G  IP      +F++F         Q+ G GLG
Sbjct: 543 KFSSPGQPVELSAAPRDGWVRISVRDQGLGIPTSFKPRIFSKFAQADAGDTRQQGGTGLG 602

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I +  I   GG +   S +   +T    +P 
Sbjct: 603 LAISKELIERMGGRIGFDSQEGQGSTFWFELPL 635



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 93/278 (33%), Gaps = 23/278 (8%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  L  +  EL E  L+ ++ +   ++ + + D+    V   D  G +  +N   ++   
Sbjct: 147 LRHLAQLTGELFELRLQARRQAEQSAMHQAMLDNAGSAVLVLDPQGRVQRSNPEARQLLG 206

Query: 228 TEGIVFQKAIGESRKLFKEEIK-KRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNS 285
                  +      +L +E  + +R+  + A      E      HG +   ++ +  + +
Sbjct: 207 YSAEALNE--QHLPQLLEEPGQFERLCLACARGPQSAEGRLRPRHGQSLPVRLNLSPIRA 264

Query: 286 FGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELW 339
            G+A  G  +  +     ++       I   L   +  +    D +    + +    +++
Sbjct: 265 EGQALQGYLLVANDLSQRDEARQRLQRIAAQLPGMVYQYLLRADGSSCFPYSSAGIRDIY 324

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 +  + ++      L   +  P +       + + + ++         H   G  
Sbjct: 325 GCTPEEVCQDAASA--FARLHPEDTAPVREAIADSAQRLATWHQEYR----VLHPERG-L 377

Query: 400 LHVIVTSNPR----GGTIW--MFENLTVQVDLETKYNT 431
           + V   + P+    G  +W     +++ +   E   N 
Sbjct: 378 IWVEGRAAPQRLPGGEVLWHGFISDISERKRGEQLQNE 415


>gi|225419699|ref|ZP_03762002.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
           DSM 15981]
 gi|225041663|gb|EEG51909.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
           DSM 15981]
          Length = 926

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 118/251 (47%), Gaps = 10/251 (3%)

Query: 548 SVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             R   AL +   EA       K+ F+  +S+E+R+P+  IIG TDL  T K   +  + 
Sbjct: 535 RSRMRNALLQSRLEAAEAKSTAKSVFLSQMSHEIRTPMNAIIGLTDL--TCKERDVPPEI 592

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I +SS  LL L+NDILD++ ++ G M++      L+ +L E++  ++T+  +  
Sbjct: 593 EKKLKKIRSSSQYLLALINDILDMSRIENGKMEIEQKDFSLSLVLQELQSMMSTQAEQKG 652

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFS 722
           +  +V           D  RL Q+   +LSNA+ F+  G  V L+       +  ++ FS
Sbjct: 653 LEFQVDFYVSHDWLAGDPVRLRQVLINLLSNAVKFTPAGGKVTLRVNEQSCGEEMEYRFS 712

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V++ G  IP +  + +F+ F           G GLGL I  +   L GG + + S     
Sbjct: 713 VQDTGVGIPYEDQERIFSSFEQLRPSISHSAGTGLGLPISRNIARLMGGDLEVKSEPGKG 772

Query: 782 TTI--NCRIPS 790
           +      R P 
Sbjct: 773 SEFYMTLRFPK 783


>gi|253700345|ref|YP_003021534.1| histidine kinase [Geobacter sp. M21]
 gi|251775195|gb|ACT17776.1| histidine kinase [Geobacter sp. M21]
          Length = 1361

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 128/255 (50%), Gaps = 3/255 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+        +  R  + L  + + L +A  +K+ F+ ++S+ELR+PL +++  + +L  
Sbjct: 554 QSTELAHQSEELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAV 613

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L   +  Y+  I  +   LL+L+NDILDLA +++G  ++   ++ L  +  EV  
Sbjct: 614 QGSSRLTEDEKGYLSIIERNGKHLLSLINDILDLAKIESGRQEVFLESVSLRKVAAEVVD 673

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            ++    E  I + + +   L + V D +RL Q+   ++ NA+ F+++GS V ++   + 
Sbjct: 674 GLSVLAREKGIALSLEAPEGLPAAVIDVKRLRQMLQNLIGNAIKFTAEGS-VTVRLDAEG 732

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
            +F+  V++ G  I     +S+F+ F        R   G GLGL+IV+    L GG VS+
Sbjct: 733 EEFLIEVEDTGIGIAPQYLESIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSV 792

Query: 775 SSSDEGVTTINCRIP 789
            S     +    R+P
Sbjct: 793 RSELGEGSVFTLRLP 807


>gi|124383088|ref|YP_001023999.1| sensory box histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126447644|ref|YP_001078619.1| sensory box histidine kinase [Burkholderia mallei NCTC 10247]
 gi|254356639|ref|ZP_04972914.1| sensory box histidine kinase [Burkholderia mallei 2002721280]
 gi|124291108|gb|ABN00378.1| sensory box histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126240498|gb|ABO03610.1| sensory box histidine kinase [Burkholderia mallei NCTC 10247]
 gi|148025666|gb|EDK83789.1| sensory box histidine kinase [Burkholderia mallei 2002721280]
          Length = 821

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 199/508 (39%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 315 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 374

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L+    +  ++ +       +  +     +S      +   +G  L V   + P    
Sbjct: 375 RVLMFRHATTQRVIDNPA----RVAVERRRTASLPAHTRFVGRSGGELPVDGNAAPTFDA 430

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 431 NGKLVGAVLIVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAEK 483

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F         E + L G     S+  
Sbjct: 484 LFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFP 542

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 543 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 602

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 603 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 660

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F 
Sbjct: 661 RPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKFR 717

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 718 GKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 777

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 778 CKRIVEHHGGRIFVESEPGQGTTFSFTL 805


>gi|254183746|ref|ZP_04890338.1| sensory box histidine kinase [Burkholderia pseudomallei 1655]
 gi|184214279|gb|EDU11322.1| sensory box histidine kinase [Burkholderia pseudomallei 1655]
          Length = 821

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 199/508 (39%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 315 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 374

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L+    +  ++ +       +  +     +S      +   +G  L V   + P    
Sbjct: 375 RVLMFRHATTQRVIDNPA----RVAVERRRTASLPAHTRFVGRSGGELPVDGNAAPTFDA 430

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 431 NGKLVGAVLIVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAEK 483

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F         E + L G     S+  
Sbjct: 484 LFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFP 542

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 543 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 602

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 603 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 660

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F 
Sbjct: 661 RPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKFR 717

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 718 GKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 777

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 778 CKRIVEHHGGRIFVESEPGQGTTFSFTL 805


>gi|71901893|ref|ZP_00683952.1| PAS [Xylella fastidiosa Ann-1]
 gi|71728347|gb|EAO30519.1| PAS [Xylella fastidiosa Ann-1]
          Length = 558

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 181/468 (38%), Gaps = 44/468 (9%)

Query: 351 SNDELLEFLRSANKLPE------QLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVI 403
           +N      LR  + + E        +   + +    V  S +  H +   L    ++ V+
Sbjct: 77  TNASFGRHLRLDSVVGESVCGIIPDDGPEYIKRYGGVALSGQRVHFEARALRRWYSVEVM 136

Query: 404 VTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               P G  +  +F ++T    +E +            D L   V VF   G ++  N A
Sbjct: 137 RVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTA 196

Query: 463 FRSLWKTEE-----NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +   +  +         S   H  ++     +            A++ +     +   G 
Sbjct: 197 YGEFFGVDLSIGTLPEWSMVLHPEDVLIFELKLSAALKTQSALRALVRA-----RRYDG- 250

Query: 518 LELLSDSVLEYSIIPL--PNAQTMLTFVNVTD-SVRAERAL---------TEKNEALRKA 565
                   +E S  P   P+   +    +  D + R E  L                   
Sbjct: 251 ----QWRWIEMSATPRYSPDGHFIGLTGSSPDVTERLEIELAREQLLKSERAARNEAENM 306

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNL 623
             +K+ F+  +S+ELR+PLT I+G+++LL       +  +   Y  +  I++S+ +   L
Sbjct: 307 ARLKDEFLSTLSHELRTPLTTILGWSELLLQR----IEEQHPCYKGLSVIASSAKVQKRL 362

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LDL+++  G M+L    + L + + EV       +     R+ + +       + D
Sbjct: 363 ISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGD 422

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QIF  +LSNA+ F+     + ++   D   F  SV ++G  I  +    +F+RF 
Sbjct: 423 ATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAEFLPHLFSRFR 482

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
                  R   G+GLGL+IV+S + +HGG+V  +S            +
Sbjct: 483 QADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 530



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G     N S+ ++   + +V +   G       E IK+    + + ++   E  +    
Sbjct: 71  DGIFRLTNASFGRHLRLDSVVGESVCGIIPDDGPEYIKRYGGVALSGQRVHFEARAL--- 127

Query: 272 GNNKSY--KIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD 323
              + Y  +++RV    G     + +D+++   +  +L  +    + L   +     +FD
Sbjct: 128 --RRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFD 185

Query: 324 QNRYLQFHNRSFVELWEIDLAF-------LATNPSNDELLE-FLRSANKLPEQLNWKTWK 375
               ++F N ++ E + +DL+        +  +P +  + E  L +A K    L      
Sbjct: 186 AQGGMRFVNTAYGEFFGVDLSIGTLPEWSMVLHPEDVLIFELKLSAALKTQSALRALVRA 245

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                 ++  E      + P+G  + +  +S           ++T ++++E     L+K 
Sbjct: 246 RRYDGQWRWIEMSATPRYSPDGHFIGLTGSSP----------DVTERLEIELAREQLLKS 295

Query: 436 QGET 439
           +   
Sbjct: 296 ERAA 299



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------NTETEG 230
           ++ E     ++L+     F +L D L   VW  D  G + + N +Y +      +  T  
Sbjct: 152 DITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSIGTLP 211

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
                   E   +F+ ++   + + SAL             G  +  ++          +
Sbjct: 212 EWSMVLHPEDVLIFELKLSAALKTQSALRALVRARRY---DGQWRWIEMSATPRYSPDGH 268

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G  G + DV++ + +        +
Sbjct: 269 FIGLTGSSPDVTERLEIELAREQLLK 294


>gi|222055917|ref|YP_002538279.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221565206|gb|ACM21178.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 645

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 152/342 (44%), Gaps = 16/342 (4%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            R L ++ + RL    ++  +   C      + G      +     +    L     ++ 
Sbjct: 154 ARRLHESADRRLLFTLNLAGVGILCIVIIATAVGVFNSWNMARIMANRMGRLSAGASVVG 213

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-----LTEKNEALRKADEIKNSFVQHVS 577
           D  L++ I  +        F    D++ A+ A     L +  +A  + +  K+ F+ ++S
Sbjct: 214 DGNLDHRI-AIQGDDEFAEFSCAFDAMTAKLASTYLELEQSRQAAEEGNRAKSQFLANMS 272

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+  I+G   LL +   G L  KQ + +   + S  +LL +++DILDL+ ++AG 
Sbjct: 273 HELRTPMNGILGVLQLLLSGHAGQLEKKQRELLLKATKSGDLLLQIISDILDLSKIEAGK 332

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILS 696
           ++++     L   L++     +++     + + +     +   V  D+ RL Q+   ++ 
Sbjct: 333 LQIHEQPFSLRKCLSDAVDYFSSEAQGKGLHLTLSIAPDVPDVVKGDQVRLRQVLLNLIG 392

Query: 697 NAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
           NA+ F+  G  V +KA   N       +  F++ + G  IP D    +F  F  V ++ R
Sbjct: 393 NAVKFTDHG-RVEVKAVTGNKTATGETEITFTINDTGIGIPADKKHLLFRSFSQVDSSDR 451

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +  G GLGL+I    + + GG ++  S +   +T    +P 
Sbjct: 452 RRYGGTGLGLAISSQIVEMMGGRIAFDSREGEGSTFFFTVPL 493


>gi|269126865|ref|YP_003300235.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
 gi|268311823|gb|ACY98197.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
          Length = 1303

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 17/325 (5%)

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            N     SR           A  +    DE +  Q  L   +  + E +   L   Q    
Sbjct: 791  NAINANSRTEALLAESQRLAQQLQERSDELQRQQAELRRSNAELEEKAA--LLAKQNRAI 848

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +      +A R L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+
Sbjct: 849  EIQNFQIEQARRTLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLVLAKLLSENPEGN 908

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L  KQ ++ + I  S T LL L+NDILDL+ V+AG M+++   +    L++ V  +    
Sbjct: 909  LTPKQVEFAKTIHDSGTDLLQLINDILDLSKVEAGKMEVHPQPLAFTKLVDYVDATFRPL 968

Query: 662  MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              +  +   V    ++   +  D QRL Q+   +LSNA+ F+S+G   +  A  +  +F 
Sbjct: 969  AVDKGLDFAVEVSPQVPEVLFTDEQRLQQVLRNLLSNAVKFTSEGRVRLTIAPAEGVEFT 1028

Query: 721  ------------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
                        F V + G  I ED  + +F  F         +  G GLGLSI  +  +
Sbjct: 1029 APALREAPLVIGFEVSDTGIGISEDKLQVIFEAFQQADGTTSRRYGGTGLGLSISRNIAH 1088

Query: 767  LHGGHVSISSSDEGVTTINCRIPSK 791
            L GG +   S     +     +P +
Sbjct: 1089 LLGGEIHAQSRVGKGSKFTLYLPVQ 1113


>gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 657

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 4/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L +A  +K+ F+ ++S+ELR+PL  I+G  ++L     G +N +Q + V  +S
Sbjct: 255 LMVANAELERASRLKDEFLANMSHELRTPLNTILGRAEILAEGIYGPINQEQHEAVRSMS 314

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L+NDILDL+ ++AG ++L  S + +  L     + +A    +  IR+     
Sbjct: 315 ESGRHLLALINDILDLSKIEAGKLELQLSLVDMVTLCEASIRMVAQSALKKEIRLHSSIS 374

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPE 732
            ++    AD +RL QI   +LSNA+ F+  G  V L+   D       F+V + G  I E
Sbjct: 375 PQVDVIYADERRLKQILVNLLSNAVKFTPAGGQVELEVQTDPDQQSVSFTVSDTGIGIAE 434

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  FV        Q  G GLGL +V+     HGG V++ S +   ++   R+P
Sbjct: 435 ADMARLFQPFVQIDAGLTRQHDGTGLGLVLVQRLTEAHGGSVAVQSQEGLGSSFTVRLP 493


>gi|239624738|ref|ZP_04667769.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521124|gb|EEQ60990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 806

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 177/463 (38%), Gaps = 47/463 (10%)

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-----SNPRGGT--IWMFENL 419
           EQ   +     IF   K   T +      +G    V  T          G   + ++ ++
Sbjct: 184 EQYFTRASMLRIFGTGKKQITRRLRRLTKDGTYHIVEFTAAKVEPPAETGCWCVLVYRDI 243

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             +  LE + N  +           + +        +  +        +   ++ +   +
Sbjct: 244 QDEYMLEQRRNVEISQLATAARTAYQMLIAVN----LTRNTYDMLEYNRYPVSKPAESGY 299

Query: 480 IRNIAATCSRYYNESDGWDLFAAI-ITSFDDERKSLQGTLELL----------------- 521
             ++ A      +     +        S  D  +  Q  + +                  
Sbjct: 300 FTDLIAAEHETVHPDYQKEFMDKFSRQSLMDAYRGGQHIVSMKIPHRGTDGLYHWSHTEV 359

Query: 522 -------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                  +D ++E ++    +    +    +    +A++ L E  +    A+  KN F+ 
Sbjct: 360 VHVESPDTDDLIEITLSRSIDEDRRIQEAAIEKERQAKQLLEEALQKAENANHAKNDFLS 419

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+++R+P+  IIG T L +         +   Y+E I+ +ST LL+L+N++LD++ ++
Sbjct: 420 KMSHDIRTPMNAIIGMTQLARLH--TGEEKRLKDYLEKIANASTHLLSLINEVLDVSKIE 477

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSK 693
           +G +KL  +   LN LL +V + +   + +    + V  +  L    + D +RL QI   
Sbjct: 478 SGTVKLEENEFNLNHLLEDVVEMVRISLDQKCQSLSVHIEEGLHPQVLGDERRLKQILVN 537

Query: 694 ILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           IL NA  ++ +   + ++    N      G + F +++ G  +  +  + +F  F     
Sbjct: 538 ILDNASKYTPEDGRISIRLNELNKMTQTMGTYCFIIEDTGIGMKPEYIEHIFEPFSRADD 597

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +  G GLG++IV++ +++ GG + I S     T     +
Sbjct: 598 SRTSKTVGTGLGMTIVKNLVSMMGGDIQIESEYGNGTRFLITL 640


>gi|118590259|ref|ZP_01547662.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
 gi|118437231|gb|EAV43869.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
          Length = 518

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 132/266 (49%), Gaps = 9/266 (3%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEK-----NEALRKADEIKNSFVQHVSYELRSPLTNI 587
           L NA TML +    D +  E                 A+  K+ F+  +S+ELR+PL  I
Sbjct: 222 LKNANTMLEYRADKDHLIVELESANAMSDEARRRAEAANLAKSRFLATMSHELRTPLNAI 281

Query: 588 IGFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +GF++++K   LG +++K    Y E I  S   LLNL+N+ILDL+ ++AG  +L+   I 
Sbjct: 282 LGFSEIMKDEVLGKMHNKNYQSYAEDIHGSGQHLLNLINEILDLSRIEAGRHELHEEPIF 341

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L+D++ E    +  +     I +    +  L    AD + L Q+   +LSNA+ F+    
Sbjct: 342 LDDIVEECGTMMKVRAKAKTISLHHTHEPDLPRVWADERALRQVVLNLLSNAVKFTPVNG 401

Query: 707 TVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
            V +K     +G    S+K+ G  IPED   +V   F   +H  +    G GLGLSIV++
Sbjct: 402 EVWIKVGPTSDGGQYVSIKDTGPGIPEDEIPTVLEAFGQGSHAIKTAEPGTGLGLSIVQA 461

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +N+H G  S+ S     T +   +P
Sbjct: 462 LVNMHDGKFSLKSKPGEGTEVIVTLP 487


>gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1322

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 123/245 (50%), Gaps = 13/245 (5%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L +  +A   A+  K+ F+ ++S+ELR+PL  I+GFT ++      SLN +   +++ I
Sbjct: 833  ELEKARDAAESANRAKSEFLANMSHELRTPLNAIMGFTQVMSRDI--SLNQEHQSHLDII 890

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + S   LL L+ND+L+++ ++AG +KLN S+  L  LL  ++  +  K     + +    
Sbjct: 891  NRSGQHLLELINDVLEMSKIEAGRIKLNTSSFDLYYLLTNLEDLLRLKADFKELTLIFDC 950

Query: 674  DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------FIFSV 723
               +  ++  D  +L Q+   +L NA+ F+ KG  V L+  + N            +F V
Sbjct: 951  AQDVPQYITSDEVKLRQVLLNLLGNAIKFTQKG-KVTLRVRKINNKDYGDPISTSLLFEV 1009

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            ++ G+ I  +  K +F  FV   +     G GLGL+I + F+ L  G +++ S     +T
Sbjct: 1010 EDTGTGIAPEDIKQLFTPFVQARNTDAHEGTGLGLTISQKFVKLMQGEITVESVVGQGST 1069

Query: 784  INCRI 788
                I
Sbjct: 1070 FRFNI 1074


>gi|209525666|ref|ZP_03274203.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493835|gb|EDZ94153.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 522

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 128/251 (50%), Gaps = 9/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +    R L +  E    A+  K+ F+ ++S+ELR+PL  I+GF  L+ T++  +L  ++
Sbjct: 106 QTQEQARQLQQAKEIADAANRAKSEFLANMSHELRTPLNAILGFAQLMSTNQ--NLAPEK 163

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q++E I+ S   LL L+NDIL+++ ++AG   L  +   L D L  ++     +    N
Sbjct: 164 RQHIEIINRSGEHLLGLINDILEMSRIEAGGATLQVNAFDLYDFLKSLEDFFKLRATSKN 223

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIF 721
           + +       L  ++ AD ++L Q+   +L NA+ F+ +GS V ++ +  N D      F
Sbjct: 224 LHLIFERPQGLIRYIKADDKKLRQVLINLLVNAIKFTDEGS-VTVRVSHQNQDTSDILKF 282

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I  + C+ +F  F           G GLGL+I + F+ L GG +++ S    
Sbjct: 283 EVEDTGLGIAPEDCEGLFEAFAQTETGLNASEGSGLGLAIAQQFVTLMGGEITVRSCLNQ 342

Query: 781 VTTINCRIPSK 791
            +T +  IP +
Sbjct: 343 GSTFSFTIPVQ 353


>gi|282898637|ref|ZP_06306625.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
 gi|281196505|gb|EFA71414.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
          Length = 623

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           ++L + N  L + +++KN F+ + S+E+R+PLT+IIGFT+LL      +   +  +Y++ 
Sbjct: 223 QSLLQFNYNLERKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQGYEAERERHQEYLQI 282

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S   LL+L+NDILDL+ ++A  +++ +    +  L   V   +  K  +  +++++ 
Sbjct: 283 IQSSGKHLLSLINDILDLSKIEANQLEVQWEVANIPSLCKSVLALVKEKAGDKGLKLQLE 342

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +  + + + D  RL Q+   +L NA+ F++ GS V L+    +    F+V + G  I +
Sbjct: 343 INEDVNTLLVDPLRLKQMLLNLLFNAIKFTNVGS-VGLRVVLKDSWLRFTVWDTGVGISQ 401

Query: 733 DMCKSVFNRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +    +F  +    +    +     G GLGL + +    +HGG + + S     +     
Sbjct: 402 EDLSLLFRPYTQLVNTINTQLDKNHGTGLGLIVTKQLAEIHGGSIEVRSQLNQGSEFTII 461

Query: 788 IPSK 791
           +P K
Sbjct: 462 LPLK 465


>gi|160942539|ref|ZP_02089788.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446172|gb|EDP23174.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii
           M21/2]
          Length = 843

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 162/388 (41%), Gaps = 17/388 (4%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTE 470
            + +  N       + +     ++      ++ +   +   + G+++  +P  R +    
Sbjct: 304 LLVVQNNRQKLRKKDQQLLAREELFSNLSRNVDDVFLMIDTETGKVEYISPNVRRILGIS 363

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS- 529
              +    H+       +  YN     D    +      E        E      +  + 
Sbjct: 364 PEAVQEDFHVL----CSAGGYNCRSRLDDLMQMEQGTQQEWNRAFIHQETGEPRYIHVTG 419

Query: 530 -IIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            I  +  A+  +    + TD  +   A+    E   KA + K  F+ ++S+++R+P+  I
Sbjct: 420 FINAVQGAKKCIVDLSDRTDEHQTTLAVEAALEVAEKASKAKTDFLSNMSHDIRTPMNAI 479

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T L+K         K ++++  + +S  +LL ++NDILD++ +++G   LN   I L
Sbjct: 480 IGITTLMKNELHQP--EKLAEHLAKLESSGQLLLGIINDILDMSRIESGKTTLNVEKINL 537

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              +++++  I  +  +      V +  +  + + D  RL Q+   ILSNA+ ++  G  
Sbjct: 538 PRQISQLESVIRQQAGQRRQTFTVETHVQHENVLGDPNRLKQVLMNILSNAVKYTPNGGH 597

Query: 708 VILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
           + L+            + F V++NG  + E+  K++F  F      G  +  G GLG++I
Sbjct: 598 IRLEIDELTHTEHYTKYRFVVQDNGIGMSEEFQKTLFEPFTREEKSGTNKVQGTGLGMAI 657

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +S ++L GG + + S+    T     +
Sbjct: 658 TKSIVDLMGGTIHVESTTGKGTQFEVVL 685


>gi|117923740|ref|YP_864357.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607496|gb|ABK42951.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 893

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 145/383 (37%), Gaps = 33/383 (8%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              E    TL++                    R+ L+      +       L        
Sbjct: 236 KSREESLRTLLESTRAV-------------GWRLNLTKKRLEYISPQIYTLLGYPPESWL 282

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A      +  D      ++       R+ S++  +       +    +  P +     
Sbjct: 283 DLAVWQSRIHPDDRLATLTSMERILAQPREHSMEYRMLAADGRTVWVRDMSSPLSGDKPG 342

Query: 542 FV--------NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                     +++     ER L    E    A   K+ F+  +S+E+R+PL  IIG  ++
Sbjct: 343 TFTHLGGFLLDISAQKDLERRLRTTTERAESASRAKSDFLAVISHEIRTPLNAIIGMGEV 402

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L       L ++Q  Y      ++  LL+L+ND+LDL+ ++AG  +L ++   L  L++ 
Sbjct: 403 LLD---DPLTTEQKHYAMVSQQAAHTLLDLINDVLDLSKIEAGEFQLEHAPYDLVGLIHS 459

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V +      ++  + I+      L + +  D +R+ Q+   +L NA+ F+ +G  + ++ 
Sbjct: 460 VVEVNTITANQQGLPIECNLPDTLPTLMHGDLRRVRQVLFNLLGNAIKFTEQG-LIRVET 518

Query: 713 ARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
            R           SVK+ G  I ++    +F+ F  +      +  G GLGL+I +  + 
Sbjct: 519 ERLETPVASWIRISVKDTGIGIAQEKQSLIFDAFTQSDGSITRRYGGSGLGLTISKRLVE 578

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           + GG + + S     +     +P
Sbjct: 579 MMGGKIGVDSQLGKGSHFFFTLP 601


>gi|320160495|ref|YP_004173719.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319994348|dbj|BAJ63119.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1095

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 148/362 (40%), Gaps = 29/362 (8%)

Query: 434  KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            +     +    E V V     R                        +  +A      +  
Sbjct: 752  QRLESVLASSPEPVLVIDEKER-----------LLLLNQAALQVPGLLLMAEPNKPVHEV 800

Query: 494  SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                DL   + +  D  R+ L   +   ++ V   S+  +      +  +     +   +
Sbjct: 801  IAQPDLVTLLKSPLD--RRVLSREITFPNNRVYYASVSAVIAEGKPVGRICTLRDITHFK 858

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L          D+IK+ FV  VS++LRSPLT + G+T +L+   +G LN +Q  YV+ I
Sbjct: 859  EL----------DQIKSDFVATVSHDLRSPLTLMKGYTTMLQM--VGELNEQQKAYVQKI 906

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +    +  LVN++LDL  ++AG + L    ++++ +++EV  ++  +  +  I ++   
Sbjct: 907  ISGVENMSRLVNNLLDLGRIEAG-IGLQIEKVMVSQVVDEVLNALQLQATQKQIELEKEW 965

Query: 674  DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                   V  DR  L Q    ++ NA+ ++  G  V ++    +   +  V + G  I  
Sbjct: 966  QSTAPVIVEGDRALLQQALYNLVENAIKYTPSGGKVSIRLEERSESLVLKVVDTGIGIAP 1025

Query: 733  DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F +F  +  R     RG GLGL+IV+S +  H G V + S     +T +  +P 
Sbjct: 1026 LDLPRLFEKFYRSGRRESYQQRGSGLGLAIVKSIVERHHGRVWVESQLGKGSTFSVELPL 1085

Query: 791  KE 792
            ++
Sbjct: 1086 RQ 1087


>gi|254487932|ref|ZP_05101137.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
 gi|214044801|gb|EEB85439.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
          Length = 529

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 106/504 (21%), Positives = 192/504 (38%), Gaps = 59/504 (11%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-------SNDELLE 357
           L     +L      + + D    L   N   +E        L   P        N  L +
Sbjct: 51  LAQQLRLLRT-HTMVNVVDTENLLVEVNDLLLEATGFSRDELIGQPVAKLYANDNVSLTD 109

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSE---THKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            +RS        N + W+       +      T      L +     +        G+I 
Sbjct: 110 EIRSKL-----SNQQGWQGETLLRRRDGSICITQTTVTPLVDSDGKWI--------GSIS 156

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENR 473
              ++T  +DL        +  G T+  L + V +        K  N A +  +      
Sbjct: 157 ARTDITKTIDL-----IAERDIGLTLHELRDDVWIVDEQAETFKYMNRAAKRRFGWTS-- 209

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                  +  A        +            +   ++++ +     +  +  + SI  L
Sbjct: 210 -------KAYADLTLSQMAQDQDCKAVLDACAALKSKKETFEKLEACIFGTKFDVSIKWL 262

Query: 534 ----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
               PN + ++   ++TD +  ER               +  FV  VS+ELRSPLT+I G
Sbjct: 263 HPNTPNGRFLIMLNDITDRMAEERK--------------QADFVSMVSHELRSPLTSIKG 308

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL +   G L+ +    +E    ++  L+ ++NDILD+  + +G +  +     +++
Sbjct: 309 AMGLLLSRAAGELSPQAVGLLEIAHRNADRLVLIINDILDMEKISSGRLDFDIKEFDVSE 368

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++E  +S A     + + I+ I          D  R++Q+   ++SNA  FS  G+T+ 
Sbjct: 369 MVHEALRSNAATQQRSGVNIRCIGLDVPHMIQTDSNRIIQVLINLMSNAAKFSKPGATIE 428

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINL 767
           +   R       SV++ G+ IPE     +F RF    N+ RG + G GLGLSI ++ +  
Sbjct: 429 VMVERLASGVRVSVRDEGTGIPEKDHHKIFQRFADMANSDRGAKGGTGLGLSICKAIVEG 488

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
            GG +S  S +   TT    +P+K
Sbjct: 489 LGGTISFESREGEGTTFMFTLPTK 512


>gi|121597261|ref|YP_990084.1| sensory box histidine kinase [Burkholderia mallei SAVP1]
 gi|238563116|ref|ZP_00439398.2| sensory box histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|251766917|ref|ZP_04819875.1| sensory box histidine kinase [Burkholderia mallei PRL-20]
 gi|254176051|ref|ZP_04882709.1| sensory box histidine kinase [Burkholderia mallei ATCC 10399]
 gi|254200388|ref|ZP_04906753.1| sensory box histidine kinase [Burkholderia mallei FMH]
 gi|254204412|ref|ZP_04910765.1| sensory box histidine kinase [Burkholderia mallei JHU]
 gi|254301655|ref|ZP_04969099.1| sensory box histidine kinase [Burkholderia pseudomallei 406e]
 gi|121225059|gb|ABM48590.1| sensory box histidine kinase [Burkholderia mallei SAVP1]
 gi|147748000|gb|EDK55075.1| sensory box histidine kinase [Burkholderia mallei FMH]
 gi|147753998|gb|EDK61062.1| sensory box histidine kinase [Burkholderia mallei JHU]
 gi|157810685|gb|EDO87855.1| sensory box histidine kinase [Burkholderia pseudomallei 406e]
 gi|160697093|gb|EDP87063.1| sensory box histidine kinase [Burkholderia mallei ATCC 10399]
 gi|238521351|gb|EEP84803.1| sensory box histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|243064372|gb|EES46558.1| sensory box histidine kinase [Burkholderia mallei PRL-20]
          Length = 821

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 199/508 (39%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 315 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 374

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L+    +  ++ +       +  +     +S      +   +G  L V   + P    
Sbjct: 375 RVLMFRHATTQRVIDNPA----RVAVERRRTASLPAHTRFVGRSGGELPVDGNAAPTFDA 430

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 431 NGKLVGAVLIVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAEK 483

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F         E + L G     S+  
Sbjct: 484 LFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFP 542

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 543 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 602

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 603 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 660

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F 
Sbjct: 661 RPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKFR 717

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 718 GKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 777

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 778 CKRIVEHHGGRIFVESEPGQGTTFSFTL 805


>gi|167746744|ref|ZP_02418871.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662]
 gi|167653704|gb|EDR97833.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662]
          Length = 811

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 102/495 (20%), Positives = 193/495 (38%), Gaps = 38/495 (7%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + D    L + N  + EL               E     R         + K W+E   +
Sbjct: 37  LLDDRFTLIWANDFYYELIGWPKD-------EYEAAFHNRPDLYYQYHDSQKEWEELSET 89

Query: 381 VYKSSETHKDTWHL------PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           V  +  + ++ +H+       +G  + V  ++      I   +     +          K
Sbjct: 90  VLNAVSSGQNGYHMVSRIRRKDGNYVWVQFSAQFSDEYINGHQVAYSVLTNIDDLIRAQK 149

Query: 435 VQGETIDHLSEGVAVFGPDGRIKL----SNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            Q  T +++   VA +  D          N  F   +  +          RNI +     
Sbjct: 150 EQSVTYENIPGFVAKYRIDQEFNFQALEGNDRFMEYFGNDAVGSGSSLSQRNIHSNMDTL 209

Query: 491 YNESDGWDLFAAIITSFDDERKSL-QGTLEL-LSDSVLEYS-----IIPLPNAQTMLTFV 543
             + D   +       F    KSL + TL L ++ S +E+       + +    T +T +
Sbjct: 210 LEQKD--RILEGKPLHFLMNVKSLKEQTLWLQVNASCIEWQDGCPVYLAVFTDITDVTEL 267

Query: 544 NVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                   E+A  L +      +A++ K  F+  +S+E+R+P+  IIG T +   +    
Sbjct: 268 REIQRKLTEQAAALKDALTVAEQANKAKTEFLSRMSHEIRTPMNAIIGMTTI--AAAYID 325

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              + S  +E I  SS  L+ L+NDILD++ +  G MK+ +    L  ++  V   +  +
Sbjct: 326 DRQRVSDCLEKIGYSSKHLMTLINDILDMSKISEGKMKIAHEPFQLETVVESVSSIVYPQ 385

Query: 662 MHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             +  +   V ++D    S V D  RL QI   +LSNA+ F+ +G ++ ++  +   +  
Sbjct: 386 ASDKGLVFTVPLADLTDTSLVGDSLRLNQILLNLLSNALKFTPEGGSIRMEIRQIKKNSD 445

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVS 773
                F+V + G  + ++   ++F+ F            G GLG+SI ++ + L GG +S
Sbjct: 446 TVCLRFTVSDTGIGMADEFISNLFHPFEQEDASTSQKYGGTGLGMSITKNLVTLMGGTIS 505

Query: 774 ISSSDEGVTTINCRI 788
           + S     TT    +
Sbjct: 506 VKSKPGKGTTFTVEL 520


>gi|188580981|ref|YP_001924426.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179344479|gb|ACB79891.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 1120

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 224/701 (31%), Gaps = 68/701 (9%)

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNH 191
             LR   +        + D  +    +       LR +    I ++  E   +       
Sbjct: 143 AALRDLAEIVTAQMRLRRDNLVTASEKA------LRRIHESTIRAQGVEIEQRASA---- 192

Query: 192 ISVFKVLFDSL-DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
            +    + + +     W  + A      + S  +    +            +L     + 
Sbjct: 193 -NSLLTMAEQIAQVGHWRINFASGHPLYSESLLRIAGLDPEAPAAQHSHLAELCHPADRG 251

Query: 251 RMISSSALEKNFC-----ETVSTLEHGNNKSYKIV------RVLNSFGEAGIAIDVSKEI 299
           R+ +  A           E       G  +   +           + G  GI +DV+  +
Sbjct: 252 RVEAVIAAAIAGGGDFEFEARFARPDGTVRDVMVRGTGKTDEAGRTIGLFGILMDVTDRL 311

Query: 300 TVNDQLTHTYEILHNLTVAIAIF----DQN-RYLQFHNRSFVELWE-----IDLAFLATN 349
            +  ++ H+     +L  A+ +     D       + N  F + +       +      +
Sbjct: 312 RIQAEMRHSEMRYRSLADALPLLVWTVDPESGEATYVNTRFADYYGPIGLSREQRLARNH 371

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           P +   +E    A +   Q     W+                WH  +   +         
Sbjct: 372 PDDAPAMEAAWEAARTSGQGYDGQWRLRARD-------GSYRWHKLSLTPIRSAANPAEV 424

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              I    ++   V          ++ G  ++    G   +     I L +P    L+  
Sbjct: 425 TEWIGTALDIDEIVSARLAMEDTSRLLGIALEGAEAGTFDWNLRTGITLLSPESVRLYGL 484

Query: 470 EEN---------RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            E            +   H  ++    +  ++  D    F A     +    +   TL  
Sbjct: 485 PETGGPRALSPTEWTATIHPDDVVEAWNHIHHAVDSRSRFTAEYRVGERWLYTSGRTLYD 544

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                     + L           +  +    RA T + E        K+ F+  +S+E+
Sbjct: 545 GEGRPYRMLGLHLDITDRKAAEAALRAATAEARAATVEAERA---SAAKSEFLAAMSHEI 601

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+G+ DLL          ++   +E I  S  +LL +VND+LD++ ++AG + L
Sbjct: 602 RTPLNGILGYADLLLDRPERDPEDQRR--LELIRVSGEVLLTVVNDVLDVSKIEAGQLAL 659

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAM 699
           +     L  L+ +    I     ++ + ++   D  L +  + D  RL Q+   +L+NA+
Sbjct: 660 DPLPFALGKLIEDTVAIIRGSALKSALTVEARIDRNLPASVIGDANRLRQVLFNLLNNAV 719

Query: 700 DFSSKGSTVILKAARDN----------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            F+  GS V L    +               F +++ G  I       +F  F       
Sbjct: 720 KFTPAGS-VTLTVRYEGSVRDAEGGRREALRFEIRDTGIGIAPSQQHRLFKPFSQVDGSI 778

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL+I +  + + GG + + S +   +     +
Sbjct: 779 SRRFGGSGLGLAICQRLVTMMGGAIGVESVEGVGSIFWFTL 819


>gi|83643693|ref|YP_432128.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631736|gb|ABC27703.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 1263

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 117/596 (19%), Positives = 232/596 (38%), Gaps = 56/596 (9%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
            +Y  +T+++      A+  +  +  E              ++    +        +   
Sbjct: 232 SAYNSDTDSDIFYGDPAVFHTDPVIAEVTLPN--------GSWRIGATPKGGWPQLAEDA 283

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYE---ILHNL----TVAIAIFDQNRYLQFHN 332
           + +  S    G+ I ++  + V  Q+   +E   +L +L     + IA+ D         
Sbjct: 284 IALRVSVLTIGLLI-LAPTVLVFRQMRKRHENEMLLRSLFDLSPLGIALND--------- 333

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK---TWKENIFSVYKSSETHK 389
               +  EI+ A L   P+     EFL  +       +++   + +    S+      ++
Sbjct: 334 YKTGDFLEINNALL--GPTGYTRKEFLMLSYWDITPKDYEKEESQQLKQLSIRGRYGPYE 391

Query: 390 DTWHLPNGQTLHVIVT------SNPRGGTIWMFENLTVQVDLETKYNTLVKV-------Q 436
             +   NG+   V++       +  R     + E++T +   E       +         
Sbjct: 392 KEYIRKNGERYPVLLNGVLISDTQGREYIWSIIEDITERKQAEAASRAARQQIEQSQKEL 451

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               D  +  + +   +G  +  N  F  +    E  L     +  I    +    +   
Sbjct: 452 QNFFDLSTNFLCIANKEGYFEKINFTFSKVLGYSERELLSEPIVHFIHPDDAESTLQELN 511

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                    SF +  +   G +  L  S    +  P+ + +   T V++T    A+  LT
Sbjct: 512 KLARGKPALSFVNRYRCYSGEVVTLLWSA---ACDPV-SGKFYATAVDITAQRNAQLELT 567

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +  +A   A   K+ F+  +S+E+R+P+  ++G  +L+  SK   L+S+Q + V+   +S
Sbjct: 568 QAKDAAEAAARAKSDFLATMSHEIRTPMNGVLGMLNLVLQSK---LDSEQLRKVKIAKSS 624

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG- 675
           +  LL+L+NDILD + VDAG ++L      L   L+E   ++A +  E ++ + +     
Sbjct: 625 AESLLSLINDILDFSKVDAGKLELELLDFDLRHHLDEFAGTMALRAQEKDLELVLDQSAV 684

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPE 732
           +      D  RL QI + ++SNA+ F+++G  VI    +  GD      SV + G  IP 
Sbjct: 685 EQSMVRGDPGRLRQILTNLVSNAIKFTAEGEIVIRCQLQPEGDHLLLTVSVSDTGIGIPA 744

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           D    +F+ F        R   G GLGL+I +    L  G +++ S     +    
Sbjct: 745 DKIGGLFDPFTQVDASTTRQFGGTGLGLAICKRLSELMEGGITVHSEQGEGSCFEF 800


>gi|301163596|emb|CBW23147.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1022

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 104/641 (16%), Positives = 257/641 (40%), Gaps = 62/641 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKNTETEGIVFQKAIGE 239
                +L     + + + +S+   +  +D       ++ N    +   T       ++  
Sbjct: 253 RKNNTELQRRKLLQENILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSV-- 310

Query: 240 SRKLFKEEIKKRMISSS----ALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAI 293
                  E  +RM  +        K +      +   + +SY   + + +   G   + +
Sbjct: 311 ----LDSEQAERMQKTDLEVFTTGKPYFGVERIILK-DGRSYDTIVRKNIIYDGTKRLLL 365

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIA-----IFDQNRYLQFHNRSF-------VELWEI 341
           ++  +  + + L    ++L ++++ +       ++ ++        F       +++   
Sbjct: 366 NIRWDQKLQNDLKRRAKVL-SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDINSF 424

Query: 342 DLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +      +P + +  ++ + +  K     +   W     +  + +  ++  W    G   
Sbjct: 425 EKFAECVHPDDRQRFVDTMDAVLK----QDSGEWDIEYRADLRGNGNYE--WWKTRGVLE 478

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE-------TKYNTLVKVQGETIDHLSEGVAVFGPD 453
             I+  +P      M  ++      E        K N L++     +++ + G+A    D
Sbjct: 479 TSILNDHPYQYVSGMSISIESYKQTELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTD 538

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             ++  N +  S   + E         +    +     +  D   L   +++   ++ K 
Sbjct: 539 YVVQWENVSVCSSSLSFEAYKRGECCYK----SAHNRTSPCDNCVLSKVLVSRQMEKIK- 593

Query: 514 LQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                 L ++ ++E    P+ N        ++   ++TD  R    L +      ++D++
Sbjct: 594 ----FHLENNRIVEVLATPVFNESEEIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKL 649

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+DLL  S+      +   Y++ I+ ++ +LL L+NDIL
Sbjct: 650 KSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEE---YMQIINTNNELLLKLINDIL 706

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ +++G ++L Y    L +  + +  S+  ++    +++  ++   +     D+ R+ 
Sbjct: 707 DLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVA 766

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ +  ++NA+ ++ +G T+ +     +      V++ G  IPE+  + VF+RF      
Sbjct: 767 QVVTNYVTNAIKYTPQG-TIEMGYEVVDAGIRLYVRDTGIGIPEEKKRKVFHRFEKLDEF 825

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G GLGLSI ++     GG V   S     +     +P
Sbjct: 826 AQ--GTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864


>gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 758

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 14/256 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
               +    L        +A+E K+ F+ H+S+E+R+PLT I+G  +L   +     N  
Sbjct: 364 HIRKQTLLQLQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAEL---AIGNPGNPG 420

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y+  I  S   LL+++NDILD + V+AG ++L  +      +L          + E 
Sbjct: 421 VQEYLTLIRQSGQNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIREK 480

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNG--- 717
            + + ++   +L  + V D  R+ QIF  ++ NA+ F+ KG  + L+     + +N    
Sbjct: 481 GVTLSLVLAEELPQAVVGDENRIRQIFFNLVGNAVKFTEKG-KIELRLTGLTSEENSARM 539

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F + ++G  IP D   S+F RF   A       +G GLGL+IV+  I   GG + + 
Sbjct: 540 MLHFEIMDSGCGIPADKQDSIFERFTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVR 599

Query: 776 SSDEGVTTINCRIPSK 791
           S++   TT    IP +
Sbjct: 600 STEGVGTTFFFNIPVE 615


>gi|262274843|ref|ZP_06052654.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262221406|gb|EEY72720.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 808

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 153/378 (40%), Gaps = 15/378 (3%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
              +  Q   E + +   +VQ   +D + + +      G I   NPA   L+      + 
Sbjct: 309 INRINEQNIKEERLSGQSQVQ-AIVDTVVDSIITIDAHGYIATFNPAAEGLFGYRATEV- 366

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G  I  +        ++S   +             + + G  +  S    E S+  +  
Sbjct: 367 IGQKINILMPPPFASEHDSYLENFMNGKQAKIIGIGREVVGMRKDGSIFPAELSVSEMRV 426

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +   +    + D             + +K + +KN FV  VS+ELR+PLT+I G   ++ 
Sbjct: 427 SGNPMFTGIIRDIT-----------SRKKDEAMKNEFVATVSHELRTPLTSIRGALGIIL 475

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G L  K  + +     +   L  L+NDILD+  +++G M  +++   L  ++    
Sbjct: 476 GKFSGELPDKTQKMLTLALRNCERLTLLINDILDIEKLESGAMLYHFNRCNLYSIIARSI 535

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +        + I +   SD +     AD  R+ Q+ + +LSNA+ +S  G  V +    +
Sbjct: 536 EDNTGYAKHHQITVTFESDTETAYINADSTRMQQVMANLLSNAIKYSKSGGEVNVTLENN 595

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
              F   + ++G+ IP +  + +F RF        RR  G GLGL+I +S I  H G + 
Sbjct: 596 GSSFRVEITDHGAGIPPEFHEHLFTRFSQADSSDTRRVGGTGLGLAIAKSIIEAHKGQLH 655

Query: 774 ISSSDEGVTTINCRIPSK 791
             S  +   T    +P++
Sbjct: 656 FFSVPKQGATFFFTVPNE 673


>gi|290892663|ref|ZP_06555655.1| histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557723|gb|EFD91245.1| histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 591

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 151/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEGTFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EVLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKN 462

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           IR+ +            DR +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IRVTIPEKTSGSVMIETDRDKLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|194364516|ref|YP_002027126.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347320|gb|ACF50443.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 925

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 158/370 (42%), Gaps = 31/370 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +    +      ID    G+ V    D  + L N   R     E          R  A 
Sbjct: 330 RRLLENLDFSSTVIDMAPAGICVLRRSDRHLLLCNQVLRDWLGEEGADSDWQAPWRGHAG 389

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                                   + + L        D VL            +  F ++
Sbjct: 390 ERGHGL----------EFTARDGRQLQVLHAACRYQGDDVL------------LCVFHDI 427

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +   +A+ AL+   +A   A++ K++F+  +S+E+R+PL  ++G  +LL  +   +L+ +
Sbjct: 428 SRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHT---TLDPR 484

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           QSQY+  I +SS++LL L++D+LD++ +++G + L  +     +L   V +S A      
Sbjct: 485 QSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFAASATCK 544

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFI 720
            ++I V +D +L +  + D  R+ Q+   +LSNA+ F+  G  V+    ++   ++   +
Sbjct: 545 GLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVVLRVRQVQREAESSVLV 604

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + V + G  I  +    +F  F         +G GLGLSI +  + L  G + + S    
Sbjct: 605 WQVTDTGVGIAAEEQARLFEPFRQVRGAASAQGTGLGLSISDRLVRLMSGELQVVSEPGL 664

Query: 781 VTTINCRIPS 790
            ++ + R+P 
Sbjct: 665 GSSFSVRLPL 674


>gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1320

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 100/508 (19%), Positives = 192/508 (37%), Gaps = 65/508 (12%)

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            ++ D      NP  D+L + L      P E  N   W  +   V++  +T  DT +  + 
Sbjct: 534  FDEDANEFRENPELDDLFDSLPLRVIRPKEDANGDVWMAHSNGVFRLLKT--DTGYDLDL 591

Query: 398  QTLHVIVTSNP-----RGGTIWM-FENLTVQVD---LETKYNTLVKVQGETIDHLSEGVA 448
            ++L  I  + P      G  +W+  E L   +D   L+     +  +    +D   + V 
Sbjct: 592  ESLSGIRDNFPLVKIVDGSDVWIRAERLLRHIDPSVLKYTERAIKPILTSIVDS-RQNVE 650

Query: 449  VFGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            +F      +  L N ++              +H+R  +          D        + S
Sbjct: 651  IFNATSSEKQSLKNISYSKNSLFFYFYPGTYSHLRTPSYQFKLDGYSEDWSLPVKDTMIS 710

Query: 507  FDDER--------KSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-------------VNV 545
                R        + L    E+   +   +SI P P  +T   +              + 
Sbjct: 711  LTSLREGDYVMNVRLLDNAGEIGETTSFAFSIAP-PIYRTWYAYLTYFLSFILIVSLFSK 769

Query: 546  TDSVRAER---------------------ALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                RA R                      L    +  +KA + K+ F+ ++S+E+R+P+
Sbjct: 770  WLLSRARRHSAQLEKVVSERTRELDETNDELRASVKEAKKAGQAKSQFLANMSHEIRTPM 829

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              ++G   LL  ++L +    Q  YV  I +SS  LL ++NDILD + ++AG +++    
Sbjct: 830  NGVMGMCTLLNDTQLSNT---QRDYVSTIRSSSETLLTIINDILDFSKIEAGKLQIETIP 886

Query: 645  IVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              L DL+ +V    +  + +  + +   I+       + D  R+ QI   ++ NA+ F++
Sbjct: 887  FDLVDLVEDVLDLFSQHLEQKKLDLVHHIAASVSTQRIGDPTRIRQILVNLVGNAIKFTT 946

Query: 704  KGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
             G   + +++  D  +    V+++G  I +     +F  F         +  G GLGLSI
Sbjct: 947  SGDIYISIESGDDPDEITIEVRDSGIGIDQRKLNDLFQPFSQEDESITRKYGGTGLGLSI 1006

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +  G +   S     ++    I
Sbjct: 1007 SKMLAEIMHGRLWAESEIGVGSSFFFTI 1034


>gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 899

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 153/335 (45%), Gaps = 21/335 (6%)

Query: 471 ENRLSPGTHIRNIAATCS--RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           E  +  G  I +I       R  NES        + +   +E ++    L++ ++ +   
Sbjct: 409 EVVVHLGVTINSIIGRMEVIRLLNESQAMTEELQVQS---EELQTQSEELKMQTEEL--T 463

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I      +T        +  + +  L +  E LR++   K+ F+ ++S+ELR+PL +I+
Sbjct: 464 TINERLEERTRDAEQKTHELEKVQVELRQSAEQLRQSSNYKSEFLANMSHELRTPLNSIL 523

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
             +++L  +    L+  + +Y + I  S   LLNL+NDILDL+ V+AG M L +  + + 
Sbjct: 524 ILSEMLAENHENHLSDDELEYAKVIHDSGEDLLNLINDILDLSKVEAGKMDLWFREMDVY 583

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST 707
           ++   ++       ++  + + V     L      D +R  Q+ + +LSNA+ F+ +GS 
Sbjct: 584 EIPQHIQNLFMPIANQKGLELSVDVANDLAEIFHTDVKRFHQVLNNLLSNALKFTEEGS- 642

Query: 708 VILKAAR----------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
           V +K  R           +     SV + G  IP++    VF  F         +  G G
Sbjct: 643 VTVKVDRARITPAMRQLSDTWITVSVTDTGIGIPKNKQNIVFESFQQADGATVRKYGGTG 702

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGLSI      L GG +++SS++   +T    +PS
Sbjct: 703 LGLSICREVTKLLGGWITLSSTEGQGSTFTVYLPS 737


>gi|325921960|ref|ZP_08183768.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325547559|gb|EGD18605.1| multi-sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 913

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 117/697 (16%), Positives = 234/697 (33%), Gaps = 103/697 (14%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E  +     ++L+   +  + L D+L  +++     G   + N  + + T         A
Sbjct: 79  ESMQRAKTQQQLAASEARLRRLADTLPQIIFIAAADGHPHYFNQRWYEYTGLNPADSDAA 138

Query: 237 IGESRKLFKE---EIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEA-- 289
             +            +    +         E       G  + +  + + V    G    
Sbjct: 139 AWQQAHTADGLQLSAQAWTQALRGERAYEVECELRRHDGQTRWHLARALPVRGDDGSISE 198

Query: 290 --GIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWE--- 340
             G   D+        QL  +      L       I + D      + N  + +      
Sbjct: 199 WIGTYTDIHDRRAFEQQLRESETRFRALCETVPAMIWMSDAQGDCVYWNPRWYDFTGQAE 258

Query: 341 ---IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
              +D  +      +D                    +++++    +    ++   H  +G
Sbjct: 259 DQAMDQGWWDVMHPDDA-------------TRVRDAFEQSLQQRGEFLAEYRVRRH--DG 303

Query: 398 QTLHVIVTSNP----RG---GTIWMFENLTVQVDLETK---------YNTLVKVQGETID 441
           Q    I  ++P     G   G I    +++ +  +E             T        +D
Sbjct: 304 QYRWCIDNASPHFASDGRFLGHIGSLTDISERKHIEDATASDRAILSLITTGAPLQVVLD 363

Query: 442 HLS------------EGVAVFG-----------PDGRIKLSNPAFRSLWKTEENRLSPGT 478
            ++              V V             P   I+   P   S         +   
Sbjct: 364 AIALSVEARGEIPLYCAVMVLDEVRKTLSFGSAPHFPIEYRGPFEASPIGLSGPPCARSA 423

Query: 479 HI------RNIAAT--CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           ++       +I A    S ++  S    + A  +T   D    + GTL +  D     + 
Sbjct: 424 YLGRQVICEDIQADPSFSDHHAVSSALGIVACCVTPILDSNGQVLGTLNIYYDR----TH 479

Query: 531 IPLPNAQTMLTFVNVTDSVRAER------------ALTEKNEALRKADEIKNSFVQHVSY 578
           +P    Q M    +    +  ER            A T        A  +K+ F+  +S+
Sbjct: 480 LPSLREQAMARSASHLAGIVIERTRVDAKLKLSLQAETSARGQAEHASRVKDEFLATLSH 539

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  I+G++ L+++      N    + +  I  S+     +++D+LD++ + +G +
Sbjct: 540 ELRTPLNAILGWSRLMQSDIFEPAN--LGKGMVIIERSARAQTQIIDDLLDMSAILSGKI 597

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSN 697
           +L      +  L     + +        I +++ +  +    F  D  RL Q+ + +LSN
Sbjct: 598 RLQPEHFDIAGLARSTVELMQPAAFAREISLELDAPTQGELWFFGDAGRLQQVLTNLLSN 657

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A+ F++ G TV +    ++      V+++G  I  D    VF+RF        RR  G+G
Sbjct: 658 ALKFTAPGGTVRVALDIEDERLRLCVQDSGMGIAADFLPHVFDRFRQADAGTTRRVGGLG 717

Query: 756 LGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
           LGLSI    ++LHGG +  SS  +   +     +P +
Sbjct: 718 LGLSISRQLVDLHGGSLGASSEGEGKGSMFTIVLPFQ 754



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/316 (10%), Positives = 90/316 (28%), Gaps = 31/316 (9%)

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY----KIVR 281
           T+         + E  +  +  ++  +             +   +    +      ++VR
Sbjct: 14  TDATAPGAPDYVAEQYR--RSGLRASLAIPLHKHGRLVAAIGVHQRAPRRWLSTEIELVR 71

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           ++ +     +    +++     +      +   L   I I   + +  + N+ + E   +
Sbjct: 72  LVAARCWESMQRAKTQQQLAASE-ARLRRLADTLPQIIFIAAADGHPHYFNQRWYEYTGL 130

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                  NP++ +   + ++      QL+ + W        ++ E   +     +GQT  
Sbjct: 131 -------NPADSDAAAWQQAHTADGLQLSAQAW-TQALRGERAYEVECELRRH-DGQTRW 181

Query: 402 VIVTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            +  + P  G        I  + ++  +   E +            + +   + +    G
Sbjct: 182 HLARALPVRGDDGSISEWIGTYTDIHDRRAFEQQLRESETRFRALCETVPAMIWMSDAQG 241

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
                NP +       E+        + +        +  D   +  A   S     + L
Sbjct: 242 DCVYWNPRWYDFTGQAED--------QAMDQGWWDVMHPDDATRVRDAFEQSLQQRGEFL 293

Query: 515 QGTLELLSDSVLEYSI 530
                   D    + I
Sbjct: 294 AEYRVRRHDGQYRWCI 309



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 92/307 (29%), Gaps = 37/307 (12%)

Query: 35  LTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE 94
           L+T I ++ L+  R   + +  +T   L+    +L +   L      +  +    D  P 
Sbjct: 63  LSTEIELVRLVAARCWESMQRAKTQQQLAASEARLRR---LADTLPQIIFI-AAADGHPH 118

Query: 95  IIGQ-LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153
              Q  ++   +   D+D              + +   + L+   Q++      +    +
Sbjct: 119 YFNQRWYEYTGLNPADSD----------AAAWQQAHTADGLQLSAQAWTQALRGERAYEV 168

Query: 154 KIEGRVSGSC---AFLR----------ILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           + E R           R          I    G Y+++ +     ++L    + F+ L +
Sbjct: 169 ECELRRHDGQTRWHLARALPVRGDDGSISEWIGTYTDIHDRRAFEQQLRESETRFRALCE 228

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI---SSSA 257
           ++  ++W  D  GD ++ N  +   T                   +  + R     S   
Sbjct: 229 TVPAMIWMSDAQGDCVYWNPRWYDFTGQAEDQAMDQGWWDVMHPDDATRVRDAFEQSLQQ 288

Query: 258 LEKNFCETVSTLEHGNNKSY------KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
             +   E       G  +                 G  G   D+S+   + D       I
Sbjct: 289 RGEFLAEYRVRRHDGQYRWCIDNASPHFASDGRFLGHIGSLTDISERKHIEDATASDRAI 348

Query: 312 LHNLTVA 318
           L  +T  
Sbjct: 349 LSLITTG 355


>gi|166850504|gb|ABY91232.1| FitF [Pseudomonas fluorescens]
          Length = 1056

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 153/390 (39%), Gaps = 29/390 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +     +     +   + G+  +       ++N  +  +    + ++       +    
Sbjct: 322 AQIEQSEQRLDMALQSGALGLWDWNLSLGTVINNDVWLQILGYSKQQMEQA--FGHGLER 379

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLT 541
            +   +  D   + A +    +DE    +    + +       VL+   I   +A    T
Sbjct: 380 WTALVHPDDYEPVMARLKAHLNDEVGEYRAEYRMRNKEGQWLWVLDIGKIMQRDANGAPT 439

Query: 542 F-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  ++++    E  + +      +A + K+ F+  +S+E+R+PL  IIG   L   
Sbjct: 440 RVTGVLQDISERKAVEAQIQQSRHDAERATQAKSEFLDCMSHEIRTPLNAIIGMAHLALD 499

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L   Q  Y+E I  ++  L+  +N +LDL+ ++AG + +      L +L+++V  
Sbjct: 500 L---PLEPVQRDYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRELVDDVLL 556

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILK 711
            +  +  E  +R+++     L   +V D  RL Q+ + ++ NA+ F+  G       +++
Sbjct: 557 LVRQRAEEKALRLQLDIPASLPRRYVGDPLRLAQVLTNLVDNAIKFTEAGHVCIGVCLVR 616

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
                    FSV + G  I ++    +FN FV        +  G GLGL+I +  + L  
Sbjct: 617 QWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISKKIVQLMQ 676

Query: 770 GHVSISSSDEGVTTINCR-------IPSKE 792
           G + + S      T           +P +E
Sbjct: 677 GDIWVKSQPGQGATFKFSVQLSLSPLPLEE 706


>gi|332703496|ref|ZP_08423584.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553645|gb|EGJ50689.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 715

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 172/392 (43%), Gaps = 30/392 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  +LT  ++ E +Y  L       +D++   + +   DGR+ L NP + SL       +
Sbjct: 183 IVTDLTAYLEKEVRYRRLHTFLWSFLDNIPCPLHITDLDGRLSLVNPDWESLMGRRYVDV 242

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSII 531
             G H+  I           +    F   +    +  K L+   +L    VL   +  + 
Sbjct: 243 -VGRHVSEIFG--------EEIARSFLEHMRQVAESGKPLRIEDKLYLGGVLRCFDTILF 293

Query: 532 PLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           P+ N   ++  V     ++T+  +AE+ L +  +    AD  K+ F+ ++S+ELR+PL  
Sbjct: 294 PVLNESGLVEGVGGFSLDITERKKAEQELVQARQKAEVADRAKSQFLANMSHELRTPLNG 353

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G  +LL  S+      ++ +++E   AS+  LL LVND+L+L+T++    +       
Sbjct: 354 IVGMIELLLISRS---EPEERKFLELARASAHDLLGLVNDLLELSTLERKRFEPISRPFG 410

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L + ++ V +  + +     +      D  L G F+ D  RL Q+   +L NA+ F+  G
Sbjct: 411 LAEAVDSVARFFSVRARLKGLDFTACVDPALSGQFLGDELRLKQVLINLLDNAVKFTESG 470

Query: 706 ST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGL 756
           S  + ++ A  +          F V + G  IP D    VF  F    +    +  G GL
Sbjct: 471 SVRLEVRLAEKDRQDGAALPVTFLVSDTGIGIPNDKLAEVFEGFNLGENYLTKRYGGAGL 530

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  ++  GG +   SS    +  +  I
Sbjct: 531 GLAIAKHIVSKLGGRIEAESSVGRGSLFHFTI 562



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 64/199 (32%), Gaps = 15/199 (7%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           ++L     K  +     +      D++   +   D  G +   N  ++      G  +  
Sbjct: 185 TDLTAYLEKEVRYRRLHTFLWSFLDNIPCPLHITDLDGRLSLVNPDWESLM---GRRYVD 241

Query: 236 AIGESR-KLFKEEIKKR----MISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
            +G    ++F EEI +     M   +   K           G  + +  +          
Sbjct: 242 VVGRHVSEIFGEEIARSFLEHMRQVAESGKPLRIEDKLYLGGVLRCFDTILFPVLNESGL 301

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             G  G ++D+++      +L    +       A + F  N   +        +  I+L 
Sbjct: 302 VEGVGGFSLDITERKKAEQELVQARQKAEVADRAKSQFLANMSHELRTPLNGIVGMIELL 361

Query: 345 FLA-TNPSNDELLEFLRSA 362
            ++ + P   + LE  R++
Sbjct: 362 LISRSEPEERKFLELARAS 380


>gi|326804104|ref|YP_004321922.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651621|gb|AEA01804.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 614

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 172/374 (45%), Gaps = 26/374 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             + + +   +     +D+L  GV +     RIK++N A  S++  ++N ++        
Sbjct: 241 RQDIQISMQEERLQLLMDYLVVGVLMIDKKHRIKVANKAAYSIFDLDDNVINH------- 293

Query: 484 AATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                +Y     G+ L   I T +   E  + +  L    + +L+ +I+ +P        
Sbjct: 294 -----KYEEVLTGYRLLQMIETCYSTKENVNDEVYLYYPKELILDVNILYVPK------K 342

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            NV+        L      +R+ +++++ F+ + S+EL++P+T + GFT+ L    L   
Sbjct: 343 ANVSGISEQVVVLAYDITEIRRLEKVRSDFIANASHELKTPVTALKGFTETLLDGALEDE 402

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++   ++VE ++  +  L  L+NDILDLA ++   +     T+ LN ++ EV  S+    
Sbjct: 403 DT-AREFVEIMNREANRLGFLINDILDLAKIEQDQLGHRSETVQLNRVIAEVVHSLEIPA 461

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS-KGSTVILK--AARDNGD 718
            EN + +   +D + G  F  +  RL QI + +++NA+ ++  +G  V +      D+  
Sbjct: 462 SENRVEVHYDNDLEAGIRFTTEEMRLKQILTNLINNAIKYNKAEGGQVWISSTVTEDDKY 521

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + ++++NG  IP++    +F RF            G GLGLSIV + +    G + + S
Sbjct: 522 VVVAIRDNGLGIPDEDIPRIFERFYRVDKTRSTASGGTGLGLSIVRNLVASMSGKIDVVS 581

Query: 777 SDEGVTTINCRIPS 790
                +T    +P 
Sbjct: 582 ELNEGSTFTVYLPK 595


>gi|294645005|ref|ZP_06722736.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806981|ref|ZP_06765803.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292639654|gb|EFF57941.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445816|gb|EFG14461.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 862

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 212/505 (41%), Gaps = 25/505 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---LAFLATNPSNDE 354
           +  + +Q      + H++   +  +D + ++ F NRS +++  +                
Sbjct: 366 QNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNRSLLQMLHLPYEAGGRFYEGMMAGS 425

Query: 355 LLEFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +   +     +K+ +Q+  K     I       E H D +   +G+ + +  + +   
Sbjct: 426 IFKIYYNGQDILHKMLKQVASKGESVKIPQGAFMKEVHSDKYFPVSGEIVPIR-SKDAIT 484

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLS--NPAFRSLW 467
           G      N++ +   +  ++  V            E      P G +K    + +  ++ 
Sbjct: 485 GMALSARNISDEEMQKRFFDMAVDESSIYPWQFDMETNCFIFPQGFLKRLGYDESVTTIP 544

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + E +R      ++ I    +R     D          + + E +  +    +++    +
Sbjct: 545 RDEMDRTIHPDDLKEIRPLFNRALTGEDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQD 604

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      +    ++     AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I
Sbjct: 605 ------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAI 658

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF+DLL  +  G  + + +Q++  I+ +  +LL L+NDILDL+ +++G M+  ++   L
Sbjct: 659 VGFSDLLSDTS-GFTSEEITQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNL 717

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL  V  S    M    + + + + +        D  RL Q+ + +++NA  F+S G 
Sbjct: 718 PLLLKTVHDSQRLNMPP-GVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG- 775

Query: 707 TVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            +      D   G     V++ G  I E+  + +F RF    +  Q  G GLGLSI ++ 
Sbjct: 776 FITFGYEDDEVPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTI 833

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I    G +S++S     T    R+P
Sbjct: 834 IERLNGTISVTSEVGKGTRFTVRLP 858


>gi|312127465|ref|YP_003992339.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777484|gb|ADQ06970.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 575

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 160/371 (43%), Gaps = 34/371 (9%)

Query: 425 LETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE K +    L K     +D L  G+  F  + RI + N    ++    E  L  G  + 
Sbjct: 224 LEEKISESNILRKRLTSLLDSLDIGIIFFDVNKRILMFNRGAENIL---ETNLKVGFSLL 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTML 540
                C R Y      +LF  +     +E++             LE SI       +   
Sbjct: 281 E----CVRVY------ELFEFLFQQDINEKE-------------LEVSINNKTKFLKVNK 317

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             ++  D+      +      L+K + I++ FV +VS+EL++PLT+I GF + LK   + 
Sbjct: 318 KKISYEDNKEGVLFILSDITFLKKLERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID 377

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +     ++  I      L+ L+ND+L L+ ++   M +    +V+ +++ E+ + +  
Sbjct: 378 DKDVAIK-FLNIIEVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKI 436

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K  + NI++ V     L   +  R  L QIF  ++ NA+ ++ +   V +   + N   +
Sbjct: 437 KAEKKNIQLDVKVQEGLEMNIY-RDWLKQIFINLIDNAIVYNKENGKVWVTVEKSNSIVV 495

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  IP+   + +F RF        R   G GLGLSIV+  + L+GG V + S +
Sbjct: 496 IKVTDTGIGIPKKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVKLYGGKVWVESQE 555

Query: 779 EGVTTINCRIP 789
              +     IP
Sbjct: 556 GIGSEFTVTIP 566


>gi|296185431|ref|ZP_06853841.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296050265|gb|EFG89689.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 566

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 162/395 (41%), Gaps = 38/395 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRI 456
            V ++S    G + + F N+  +++     N ++  Q      +  +  GV     + +I
Sbjct: 202 RVKISSKDEIGQLGITFNNMADKLNST--LNDVLDKQNKLEAILKSMDSGVIAVDVNYKI 259

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP  + ++    + +  G ++ +            +  + +  I   +  ER     
Sbjct: 260 IMINPYAKKIFGINGDII--GENLMDNIRDFEFEDVFKNTDEDYVEIKILWPKER----- 312

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            L + +  ++           T+    ++TD  R E               ++  FV +V
Sbjct: 313 NLRIRTADIINVR----EKIGTVAVVQDITDIKRLE--------------NMRTQFVANV 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF + L+         K   ++  I+  +  L  L+ND L L+ +++ 
Sbjct: 355 SHELKTPLTSIKGFAETLRYVDDFKNKEK---FLNIINDEADRLTRLINDTLTLSHIES- 410

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++     I +N ++ +V   +     + NI++  I D K+ +   D  R  Q+   ++ 
Sbjct: 411 SIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGD-KVPNLKGDNDRFKQMLINLVD 469

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           NA+ +S     V +    +N + I  V++ G  I ++    +F RF          + G 
Sbjct: 470 NAIKYSDNNGIVKIGTKLENDNCIIWVEDKGVGISKEHIDRIFERFYRVDKARSRAQGGT 529

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+IV+  +    G++ + S     +     IP
Sbjct: 530 GLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 564


>gi|255025954|ref|ZP_05297940.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J2-003]
          Length = 591

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 155/369 (42%), Gaps = 29/369 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEGTFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKN 462

Query: 667 IRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           I++ +I +  + S     DR +L QI   +LSNA++++     V +K      + I  V 
Sbjct: 463 IQV-IIPEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVT 521

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +
Sbjct: 522 DNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGS 581

Query: 783 TINCRIPSK 791
           T    +P K
Sbjct: 582 TFRVTLPKK 590


>gi|20092758|ref|NP_618833.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19918052|gb|AAM07313.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 375

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 16/264 (6%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + ++   +V      E  L +  +     +  KNSF+ ++S+ELR+PL ++IGF+DLL  
Sbjct: 119 EYLVNTCDVNGQKELEITLLKAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLE 178

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G LN+KQS+YV  I  S   LL ++N++LD++ ++AG   L Y  + +  L+ +V+ 
Sbjct: 179 GAFGPLNTKQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYENVDIASLIGDVRM 238

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           S+ +      I +++  D  +G+  AD  +L QI   ++SNA+ F+     V++ A +  
Sbjct: 239 SLLSPASVKRITVELKIDPSVGNVRADITKLRQILYNLVSNAIKFTPAKGKVVISACKKE 298

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---------GQRRGVGLGLSIVESFINL 767
           G     V + G  + +D  + +F  F                          IV +F++L
Sbjct: 299 GVLEVKVSDTGIGLSKDSHEKIFMPFTQADSSAARGYGGAGLGLY-------IVRNFVDL 351

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           HGG + + S     +     +P++
Sbjct: 352 HGGKIWVDSEVGKGSIFTFTLPAE 375


>gi|167644019|ref|YP_001681682.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167346449|gb|ABZ69184.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 901

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/717 (16%), Positives = 247/717 (34%), Gaps = 75/717 (10%)

Query: 117 NWLKFHHYIKLSKATEKLRKEGQSF-DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
            ++         +    +R  G++F  L    +N   + +E +            + G  
Sbjct: 65  RFVHPESRQDFIETASLIRAAGEAFNRLKVVCKNGGWVWLESQSRLGP----NGEMVGAL 120

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD-ILWANISYKKNTETEGIVFQ 234
            ++     +  +L+      ++L  S    VW  +  G  I W+    +      G+  +
Sbjct: 121 RDVTADMARRAELAVARQTRELLASSAGIGVWSYEPHGQHIEWS----RDILTVTGLEPE 176

Query: 235 KAIGESR--KLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                 +         ++ + ++        E    E           +Y+        G
Sbjct: 177 DIAQPDQFYDRLDPAEREGLRATFDAAVRTGEGATIEHRLRGAGDQWFTYRATFRTEPRG 236

Query: 288 EAGIAI-----DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           +   A+     +V+      D           ++     A+A++D++  L+  +  F+E+
Sbjct: 237 DGLFALKGISQNVTDVARTRDAAVWGERQARRLVEEAPFAVALYDRDLRLRVVSPRFLEI 296

Query: 339 WEIDLAFLATNPSND-------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           ++     +     +D         +  +  A      +  +    +      +       
Sbjct: 297 FQATEEGVIGRSLHDLTSGTRRRFVNAVERALTGETVVRREDQLRDALGRSHTLRWEARP 356

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           W   +G+           GG I   +++T   D   +     +     +     GV    
Sbjct: 357 WRDADGEI----------GGVITYMDDVTALSDARREARVNARRLRVALGAAQAGVYEID 406

Query: 452 PDGRIKLSNPAFRSLWKTEE---------NRLSPGTHIRNIAATCSRYY--NESDGWDLF 500
              +    +P F  +                +     + ++      +    E  G   F
Sbjct: 407 HVDKAFWGSPEFHRILGRRISYEDVRSAVWPMIHPDDVASVYDASDAWLGKREDGGGRSF 466

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              + +   E + ++   E+  D+            +     +++ D  RAE AL E   
Sbjct: 467 DVRVVTGRGETRWIRIFHEVRQDAGGRIR-------KAFGLILDIDDKKRAELALVEAER 519

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A + A+E K  F+ ++S+E+R+P+  ++G   LLK  K   L       +    A   +L
Sbjct: 520 AAQAANEAKAQFLANMSHEIRTPMNGVLGVMHLLKREK---LPGDADHLLGEALACGRML 576

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L++D++D + ++AG + +    +  ++L   V + +  +     + ++V +   LG  
Sbjct: 577 STLLDDVIDFSRIEAGRLDVTREAVDPSELAMSVARLLRAQAEHKGLELRVEA-PDLGLI 635

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKNNGSSIPED 733
           + D  RL Q    ++ NA+ F+  GS V LK    +G         +F V + G  I  +
Sbjct: 636 LTDPSRLRQALFNLVGNAVKFTLAGS-VTLKVRLLDGGGPQDVPKIVFEVIDTGVGIAAE 694

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F RF        RR  G GLGL+I      + GG V  +S ++  +T    I
Sbjct: 695 AQARLFERFQQADASTTRRFGGSGLGLAITRRLAEMMGGEVGFTSREDAGSTFLLTI 751


>gi|282897084|ref|ZP_06305086.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197736|gb|EFA72630.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 638

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 162/393 (41%), Gaps = 29/393 (7%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I+ F ++  +++  E +    +  +   ++ L    ++G  +   + ++ L NP  R
Sbjct: 245 GELIFSFNDMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQVILVNPTAR 304

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++  E   +        +      Y   S   ++   +      ER+S +  + L   +
Sbjct: 305 RIFAWEGTDV--------VGQNLLNYLPHSVQMEITRTLYEMASGERESAEFRIPLREPT 356

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                I+            +  +S++      +      + +E K+ F+ ++S+ELR+PL
Sbjct: 357 KRTIRIL------LTTVLDSQRESIKGIAITVQDITREVELNEAKSQFISNISHELRTPL 410

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  + + L          ++ +++  ++  +  L  LVND+LDL+ +++G    ++  
Sbjct: 411 FNIKTYIETLHDYGDDLGAKERQEFLATVNHETDRLTRLVNDVLDLSKLESGR-TYHFDG 469

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L   L +  ++      E  I +       L   + +   LLQ+F  ++ NA+ F+  
Sbjct: 470 VDLAQALEQTLRTYQLNAKEKGINLVQELASNLPMVIGNYDLLLQVFGNLIGNALKFTPA 529

Query: 705 GSTVILKAARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVG 755
           G  V ++A R + +            + + G  I  +  +++F+RF    +R     G G
Sbjct: 530 GGIVAIRAYRVDVNRSGHNSPLVRIEISDTGIGIAPEDQEAIFDRFFRVENRVHTLEGTG 589

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSIV + +  H   + + S     TT    +
Sbjct: 590 LGLSIVRNIMERHHSQMHLVSEVGVGTTFWFDL 622


>gi|253567089|ref|ZP_04844540.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944213|gb|EES84722.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1022

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/641 (16%), Positives = 257/641 (40%), Gaps = 62/641 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKNTETEGIVFQKAIGE 239
                +L     + + + +S+   +  +D       ++ N    +   T       ++  
Sbjct: 253 RKNNTELQRRKLLQENILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSV-- 310

Query: 240 SRKLFKEEIKKRMISSS----ALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAI 293
                  E  +RM  +        K +      +   + +SY   + + +   G   + +
Sbjct: 311 ----LDSEQAERMQKTDLEVFTTGKPYFGVERIILK-DGRSYDTIVRKNIIYDGTKRLLL 365

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIA-----IFDQNRYLQFHNRSF-------VELWEI 341
           ++  +  + + L    ++L ++++ +       ++ ++        F       +++   
Sbjct: 366 NIRWDQKLQNDLKRRAKVL-SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDINSF 424

Query: 342 DLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +      +P + +  ++ + +  K     +   W     +  + +  ++  W    G   
Sbjct: 425 EKFAGCVHPDDRQRFVDTMDAVLK----QDSGEWDIEYRADLRGNGNYE--WWKTRGVLE 478

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE-------TKYNTLVKVQGETIDHLSEGVAVFGPD 453
             I+  +P      M  ++      E        K N L++     +++ + G+A    D
Sbjct: 479 TSILNDHPYQYVSGMSISIESYKQTELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTD 538

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             ++  N +  S   + E         +    +     +  D   L   +++   ++ K 
Sbjct: 539 YVVQWENVSVCSSSLSFEAYKRGECCYK----SAHNRTSPCDNCVLSKVLVSRQMEKIK- 593

Query: 514 LQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                 L ++ ++E    P+ N        ++   ++TD  R    L +      ++D++
Sbjct: 594 ----FHLENNRIVEVLATPVFNESEEIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKL 649

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+DLL  S+      +   Y++ I+ ++ +LL L+NDIL
Sbjct: 650 KSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEE---YMQIINTNNELLLKLINDIL 706

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ +++G ++L Y    L +  + +  S+  ++    +++  ++   +     D+ R+ 
Sbjct: 707 DLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVA 766

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ +  ++NA+ ++ +G T+ +     +      V++ G  IPE+  + VF+RF      
Sbjct: 767 QVVTNYVTNAIKYTPQG-TIEMGYEVVDTGIRLYVRDTGIGIPEEKKRKVFHRFEKLDEF 825

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G GLGLSI ++     GG V   S     +     +P
Sbjct: 826 AQ--GTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864


>gi|126667179|ref|ZP_01738153.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
 gi|126628335|gb|EAZ98958.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
          Length = 969

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  IIGFT+LL     GSL  +Q  ++  I
Sbjct: 285 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLK---GSLARQQRDHLNTI 341

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             SS ILL ++NDILD + ++AG +  +     L D++ EV   +A   H+ N+ +  ++
Sbjct: 342 RKSSEILLTIINDILDFSKIEAGKLTFDRVPFQLRDIVEEVMVMLAPAAHDKNLDLVTLV 401

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNN 726
            +    + + D  RL QI + +L+NA+ F+  G  V+  +  +            SV + 
Sbjct: 402 YNDVPNNLMGDPLRLKQIITNLLNNAIKFTHTGEVVLRASLEEEDASNGSVTLRVSVADT 461

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +     +S+F+ F         Q  G GLGL+I +      GG + + S     +T 
Sbjct: 462 GMGLSRAQQRSLFDAFSQADASTARQYGGTGLGLAISKRLAEEMGGKIGLESELGKGSTF 521

Query: 785 NCRI 788
              +
Sbjct: 522 WFTL 525


>gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
 gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
          Length = 991

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/581 (18%), Positives = 219/581 (37%), Gaps = 46/581 (7%)

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
              + + E   L + + ++   +   L +          +   KS ++  V     +   
Sbjct: 3   SSHRQLLEELALLRSQSRQSRKAEHELMRQQKLLREQNINLIRKSVELSDVKRQLEDKNY 62

Query: 292 AIDVSKEI------TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            +++S++       ++         +L N    I   D++  + + NR            
Sbjct: 63  ELELSQKKLEQTLDSLRTSENTLRSVLANSPDTIICVDRDHRVIYMNRP----------- 111

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +A   S   +   L           +    E +F+  +SS+      HL  G+  ++   
Sbjct: 112 IAGYHSGLTIGNHLCDYVVADHHDLYHQAVEEVFTSARSSQIETRV-HLSGGEDGYLESR 170

Query: 406 SNP---RGGTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
             P    G  +++     +++ +  +E + +   +              + G + R    
Sbjct: 171 FGPCIDNGEVVFVVMISTDISERKRIEQQLHLSFERVDRI------NRFLIGREARNMEL 224

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                 L    +          +  +    +    +     AAI ++   +R  +     
Sbjct: 225 KREVDKLLAELDRPFKYHVENADAVSGPVPFSLMDENASGTAAISSALLTDRDQVSIPEN 284

Query: 520 LLSDSVLEYSIIPLPN---AQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFV 573
                V++     L N      +     +  + + E A+    +    AD     K+ F+
Sbjct: 285 ADPQLVIQLQRDALMNLLHDANVARNALLDANKKLEDAIRNARKMAAHADAANDAKSQFL 344

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  +IG TDLL  S   +L+++Q ++ + IS+S   LL LVNDILD + +
Sbjct: 345 ANMSHEIRTPLNGVIGMTDLLLES---ALDTEQRKFAQTISSSGRNLLRLVNDILDFSKI 401

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           +A  +++ Y    L D+L EV    A   HE N+ +  + D  +      D  RL QI  
Sbjct: 402 EANKLEIEYLDFDLLDVLEEVIALFAYSAHEKNVDLIFLPDHTIPFRLKGDAARLQQILV 461

Query: 693 KILSNAMDFSSKGSTV-ILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            ++SNA+ F+++G  V  +   R++       F+V + G  I  +  ++VF  F      
Sbjct: 462 NLVSNALKFTAEGEVVFSVDLERESDATATIRFTVSDTGIGIDSERIEAVFAPFTQADGS 521

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              +  G GLGLSI           + + SS E  +T    
Sbjct: 522 MIRKYGGTGLGLSISNQLARKMNSEIHVQSSPENGSTFCFS 562



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 53/156 (33%), Gaps = 7/156 (4%)

Query: 167 RILSLDGIYSELAE--TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN---IS 221
           R L       EL++         L    +  + +  +    +   D+   +++ N     
Sbjct: 55  RQLEDKNYELELSQKKLEQTLDSLRTSENTLRSVLANSPDTIICVDRDHRVIYMNRPIAG 114

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG--NNKSYKI 279
           Y         +    + +   L+ + +++   S+ + +      +S  E G   ++    
Sbjct: 115 YHSGLTIGNHLCDYVVADHHDLYHQAVEEVFTSARSSQIETRVHLSGGEDGYLESRFGPC 174

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL 315
           +          I+ D+S+   +  QL  ++E +  +
Sbjct: 175 IDNGEVVFVVMISTDISERKRIEQQLHLSFERVDRI 210


>gi|205375564|ref|ZP_03228352.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4]
          Length = 606

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 146/386 (37%), Gaps = 28/386 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-PAFRSLW 467
           G     F NLT ++ + +       +     + ++++GV      G++ L N PA + L 
Sbjct: 237 GELAMNFNNLTKRLQEAQATTEGERRKLSSVLSYMTDGVIATDRKGKVILINDPAAKQLK 296

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              +  LS      N   T     +E    +L     +   D     Q  +   +     
Sbjct: 297 VERDQVLS------NSIVTLLGLEDEYTFDELLNEQESVILDYSSKDQPYILRAN----- 345

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +S+I             + D    E           K D  +  FV +VS+ELR+PLT +
Sbjct: 346 FSVIQKETGHVNGLITVLHDITEQE-----------KIDMDRREFVANVSHELRTPLTTM 394

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + + L    +        Q+++     +  ++ LVND+L L+ +D+     N   I  
Sbjct: 395 RSYLEALAEGAMDDPTI-APQFLKVTQDETERMIRLVNDLLQLSKMDSRDYYFNKEWIPF 453

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
               + +           ++  K     +      D  +L Q+   I+SNA+ +S  G T
Sbjct: 454 IRFFDGIIDRFEMS-KAQHVTFKRELPDEQILVEIDPDKLTQVIDNIISNALKYSPDGGT 512

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           V           + S+K+ G  IP+D    +F RF         Q  G GLGL+I +  I
Sbjct: 513 VTFGVDIQEEFIVISIKDQGMGIPKDNLDKIFERFYRVDKARSRQMGGTGLGLAIAKEMI 572

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
             HGG +   S +   TTI   +P +
Sbjct: 573 YTHGGDIWADSKEGEGTTIFFTLPYE 598


>gi|126661522|ref|ZP_01732570.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126617188|gb|EAZ88009.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 611

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 165/375 (44%), Gaps = 47/375 (12%)

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            +N   + L   + +  +    I  +        +E    +    II +   E  S+   
Sbjct: 4   YANQQAKKLLGQDIDPETNPEDIAAVYHNYIAGTDELYPNEKL-PIIKALQGEVTSVDDL 62

Query: 518 LELLSDSVL--EYSIIPLPNAQT-----MLTFVNVTDSVRAER----------------- 553
               SD ++  E    P+ N        ++ F ++T+  RAE+                 
Sbjct: 63  EIHQSDRIILIESRGTPIYNEAGEVEYALVAFQDITEHKRAEKILADYYQELEQEVKRQT 122

Query: 554 -ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L    E    A+E K++F+ ++S+ELR+PL  I+GF+ ++K S   +L+ ++ + +  
Sbjct: 123 EELEIAKEKAEVANEAKSAFIANMSHELRTPLNAILGFSQIMKRS--STLSQEEKENINI 180

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L+N+ILDLA ++AG M LN     L   L EV+  +  K +   +++++ 
Sbjct: 181 IGRSGDYLLTLINNILDLAKIEAGKMTLNPCDFDLYSCLQEVEDLLHLKANNKGLKLEIN 240

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILK----------------AAR 714
            D  +  ++  D  +L Q+   +++NA+ F+S+G   V ++                +  
Sbjct: 241 HDQDVPQYINTDETKLRQVLINLINNAIKFTSEGGVFVQVRNQPSDIKDSNLNNDSKSLT 300

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +N     +V++ G  I       +F  F    + +    G GLGL+I   F+ L GG ++
Sbjct: 301 NNDYINITVQDTGVGIAAGELDKLFEAFAQTESGKKSSEGTGLGLAISRKFVQLMGGDIT 360

Query: 774 ISSSDEGVTTINCRI 788
           +++  E  TT +  I
Sbjct: 361 VTTEVESGTTFSFNI 375


>gi|282899300|ref|ZP_06307269.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195757|gb|EFA70685.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 315

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 126/231 (54%), Gaps = 3/231 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            + +++KN FV  VS+E+R+PLT I G  ++L T  L     +  Q ++   ++S  LL 
Sbjct: 85  HEVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEAEQMLKIGVSNSERLLR 144

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFV 681
           LVN+IL+L  +D+G M+LN     +N ++ +  +++     +N+I I   + D      +
Sbjct: 145 LVNNILNLEMLDSGKMRLNLKLCDINIMVKQAMETVRPIAQQNSIEISYNTLDVPNTEIL 204

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD + ++Q+ + +LSN++ FS  G+ V + A   N + I +VK+ G  +P    +++F R
Sbjct: 205 ADEETIVQVLTNLLSNSIKFSHSGNKVEIYATVSNKEIIVAVKDYGKGVPPHKLETIFER 264

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  V  +   Q+ G GLGL+I ++ +  H G + + S     +T    +P 
Sbjct: 265 FEQVDVSDSRQKGGTGLGLAICKNIVEKHQGKIWVESILGSGSTFYFTLPL 315


>gi|37520585|ref|NP_923962.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211579|dbj|BAC88957.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1130

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/413 (23%), Positives = 167/413 (40%), Gaps = 50/413 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                       T + +S+GV++    G  +L NPA   +     ++    +  +N    
Sbjct: 441 RAVEEARARLEATFEQMSDGVSIADARGNPQLINPAGLRILGLPADQDLTDSDWQNRFEV 500

Query: 487 CSRYYNESDGWDLFAAIITSF-DDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TML 540
            +      +  ++       F    R  LQ  +      +L  S  PL + +      + 
Sbjct: 501 FTLEGEPLEAQEVPVRRAVRFGTTVRADLQIRIRQGRSVLLSVSASPLKDGRGNIYGVVA 560

Query: 541 TFVNVTDSVRAERAL------------------------------------------TEK 558
            F +VT     ER L                                            +
Sbjct: 561 VFRDVTVERERERRLVQQARELEALNTELAATNEELEAQQSELEAINAELEQQRLQIESQ 620

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+ L +AD  KN+F+  +S+ELR+PL  IIGF+ LL  +K      +    ++ +  +  
Sbjct: 621 NQELVEADRQKNNFLASMSHELRTPLNAIIGFSQLLLRNKNLQEQPQVLLQLDRVYQNGK 680

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           I L LVNDILDLA + AG ++L Y  + L   + EV  ++ +   + N+ +++  D  +G
Sbjct: 681 IQLRLVNDILDLAKIKAGKVELRYQPVALEPFVREVYAALESLALQKNLSVRIAVDPSIG 740

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S   D Q+L  I   +LSNA  ++ +G   +         F   V++ G  I  D  + V
Sbjct: 741 SVETDPQQLRTILINLLSNAFKYTERGEVEVRARRPAADRFELEVRDTGVGIDPDQQQKV 800

Query: 739 FNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ F     A   Q  G GLGL+I +  + L GG +S+ S+    +T   R+P
Sbjct: 801 FDEFSRLEGAATRQASGTGLGLAICKRLVTLMGGEISLVSTPGVGSTFTVRLP 853



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 41/146 (28%), Gaps = 6/146 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V +           ++  ++I D     Q  N + + +  +      T+       E 
Sbjct: 441 RAVEEARARLEATFEQMSDGVSIADARGNPQLINPAGLRILGLPADQDLTDSDWQNRFEV 500

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTI 413
                +  E       +   F     ++         +   L V  +    G     G +
Sbjct: 501 FTLEGEPLEAQEVPVRRAVRFGTTVRADLQIRIRQGRS-VLLSVSASPLKDGRGNIYGVV 559

Query: 414 WMFENLTVQVDLETKYNTLVKVQGET 439
            +F ++TV+ + E +     +     
Sbjct: 560 AVFRDVTVERERERRLVQQARELEAL 585


>gi|298493109|ref|YP_003723286.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298235027|gb|ADI66163.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1002

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 142/289 (49%), Gaps = 14/289 (4%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RKS +   + +    L + I  +  AQ M   + +     ++ AL +  E    A+  K+
Sbjct: 476 RKSFELWKQTVKHKSLPWQIFEIEVAQEMRNSLMLAALEFSQVALQQAAEQAEIANRAKS 535

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+PL  I+GFT +L  ++  SL+ +  + ++ IS S   LL+L+ND+L++
Sbjct: 536 QFLAKMSHELRTPLNAILGFTQIL--TRNSSLSQEDQENLDIISRSGEHLLSLINDVLEM 593

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG   LN +   L  L+  +++  A K  +  I +      ++  +V  D  +L Q
Sbjct: 594 SKIEAGKPTLNETYFDLYRLIYSIQEMFALKAADKGINLITEFGVEVNKYVFGDEGKLKQ 653

Query: 690 IFSKILSNAMDFSSKGST-VILK-------AARDNGDFIF--SVKNNGSSIPEDMCKSVF 739
           I   ++ NA+ F+  G   + +         A  NG  +    V++ G+ I  +  + +F
Sbjct: 654 ILINLIGNAIKFTVVGHVAIRVSCPPNYAPLAVTNGKVLIELEVEDTGAGIALEDQELIF 713

Query: 740 NRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             F+ +    Q  +G GLGL+I   F  L GG +++ S     TT  CR
Sbjct: 714 EAFLQSKGGRQFMQGTGLGLAISRQFARLMGGDITVKSILGEGTTFTCR 762


>gi|196231944|ref|ZP_03130800.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224066|gb|EDY18580.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 739

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/590 (15%), Positives = 198/590 (33%), Gaps = 39/590 (6%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           ++     +            +  +     R   + A E+++C  V           K++ 
Sbjct: 28  FRLLAHHDHSASIPLRHLGGESHRNPSPPRFAPAGAAERDYC-RVPRPTADRLHIAKLLD 86

Query: 282 -----VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                V +         D +      ++     E + +    I   D +  +   N    
Sbjct: 87  PTKVMVPHLHMPPRAKPDRANWHETEERFRLLVESVKD--YGIFTLDADGCVTSWNEGAR 144

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-P 395
            +   + A         E+L    S    PE +     +  +           + W L  
Sbjct: 145 RIKGYEAA---------EILGSHFSRFYPPEDVLAGKPERELVIAIAEGRVEDEGWRLRK 195

Query: 396 NGQTLH--VIVTSNPRG------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-G 446
           +G      V++TS          G   +  +LT +   E       +     +D ++E  
Sbjct: 196 DGTRFWADVVITSLWDSATGELKGFGKVTRDLTERRQAEIALRQSEEQFRLLVDCVAEYA 255

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           + +  P G +   N             +  G H         R   ++D  +       S
Sbjct: 256 IFMLDPTGHVVTWNSGAEKAKGYLAKEI-IGKHFGCFYTKEDR---DTDLPNRLLEEARS 311

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE----RALTEKNEAL 562
               R       +  +    +  I  + ++   L   +       E    R +       
Sbjct: 312 HGHVRAQGTRVRKDGTTFQADVLITAIRDSTGQLQGFSKVTRDITEQLRIREMETAKLTA 371

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            KA+E K++F+  +S+ELR+PLT +I     L  ++    + +  +++  I  ++ +   
Sbjct: 372 EKANEAKDNFLAVLSHELRTPLTPVIAGASYLIENRSAISDEEMLEHLHTIRRNAQLEAQ 431

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++D+LDL  +  G M L+   + ++  L +V   +  ++    + +             
Sbjct: 432 LIDDLLDLTRISRGKMILHPEAVDIHAALRDVGAILQEEIQRKQLALSYDLQATGYWSWV 491

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R+ Q+F  +++NA+ F+ +G  + ++ A          V ++G  I  +  + +F  
Sbjct: 492 DPTRIRQVFWNLINNAIKFTPEGGRIKVRSANPSPTCLRVDVSDSGLGIAPEQQQRIFGA 551

Query: 742 FVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
           F         +  G+GLGL+I    +    G +S++S            +
Sbjct: 552 FEQGEVDTTRKFGGLGLGLAITRHLVEQQNGSISVTSEGKGKGACFTVTL 601


>gi|172036053|ref|YP_001802554.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697507|gb|ACB50488.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1084

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/555 (18%), Positives = 204/555 (36%), Gaps = 70/555 (12%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPS 351
           ++ + +       I+ + T  I  F  +  + F N ++   +       ++  F +  P 
Sbjct: 299 QMALKESEAQYRAIVEDQTELICRFLPDGTITFVNEAYCRYFGKTQADILNTTFFSLTPQ 358

Query: 352 NDE--LLEFL-------------RSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHL 394
             +  L + L                     +  W+ W          +  E       +
Sbjct: 359 EYQGFLWDNLSCLSIQNPVITHQHPIINGQGETRWQYWINRGLFDEDGNIIEIQGVGRDI 418

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQV----DLETKYNTLVKVQGETIDHLSEGVAVF 450
              + +   +  N +        ++T Q+    DLE   N   +     ++     +  F
Sbjct: 419 TEQRRIEQELARNLQQSQ--TLNDITQQIHQSLDLEIILNHTTEETRRILESDRVAIYQF 476

Query: 451 GPDGR------------IKLSNPAFRSLWKTEENRLSPGTH--------IRNIAATCSRY 490
             D              +KL N   + +W+    + + G          + +I     + 
Sbjct: 477 NADWSGEFIAESVDNQWVKLVNSQVKKVWEDTYLQQTKGGRYQYNQSFMVDDIYTVGHQQ 536

Query: 491 YNESDGWDLFAA---IITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVN 544
            +        A    I+  F   +  L G L    +      + S I L N Q       
Sbjct: 537 CHLDLLEQFQAKAYMIVPIFVHHQ--LWGLLACYQNSHPRHWQSSEIQLLN-QIAHQLGL 593

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                   +AL         A+  K+ F+ H+S+ELR+PL  I+GF+ LL   +  +L+ 
Sbjct: 594 AIQQSELLKALETAKNTAESANRAKSDFLAHMSHELRTPLNAILGFSQLLNNDE--NLDE 651

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +Y++ I+ S   LL L+  +LD+A ++AG + L+Y  + L+ L+  +      K   
Sbjct: 652 EQKEYIDIINQSGEHLLTLIKSVLDMAKIEAGEINLDYQPLNLHQLVKNLSGMFKLKAQC 711

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
            NI + V     + S  + D  +L Q+   +L+NA+ F+ +G  ++              
Sbjct: 712 KNIDLTVDIGNDVPSLIMGDEGKLRQVLINLLNNAIKFTEEGKVILSIKKSQQQQEKSSQ 771

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSI 774
                F +++ G  I  +    +F  F      +  + G GLGL+I   F++L GG + +
Sbjct: 772 IIPLRFEIEDTGPGIDIEEAPRLFQPFFQTKLGQKTQEGTGLGLTISYEFVHLMGGTLQV 831

Query: 775 SSSDEGVTTINCRIP 789
           S   +G T     +P
Sbjct: 832 SCPIKGGTIFYFTLP 846



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 84/260 (32%), Gaps = 14/260 (5%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           + +L   I++   +  L+    +  E+       +A +  + +LL+ L  A  L   LN 
Sbjct: 193 IKHLAQTISV---DYRLKTIKPALKEV----PRAIAVHRHHPQLLQRLDVA--LDHFLNS 243

Query: 372 KTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
             + +     Y+ +       W L     L +++        + +  +++     +    
Sbjct: 244 SEYTQIYRRWYEPTPVITVSPWMLTGSGVLVLLMILMVIIWRVLILRSMSRLQQTQMALK 303

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                    ++  +E +  F PDG I   N A+   +   +  +   T           +
Sbjct: 304 ESEAQYRAIVEDQTELICRFLPDGTITFVNEAYCRYFGKTQADILNTTFFSLTPQEYQGF 363

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--QTMLTFVNVTDS 548
             ++         + +      + QG  E      +   +        +      ++T+ 
Sbjct: 364 LWDNLSCLSIQNPVITHQHPIINGQG--ETRWQYWINRGLFDEDGNIIEIQGVGRDITEQ 421

Query: 549 VRAERALTEKNEALRKADEI 568
            R E+ L    +  +  ++I
Sbjct: 422 RRIEQELARNLQQSQTLNDI 441


>gi|295425530|ref|ZP_06818221.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664]
 gi|295064783|gb|EFG55700.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664]
          Length = 618

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 166/419 (39%), Gaps = 35/419 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETID 441
            E  +   ++ NG  +  V + S+   G +   F  L+++V+  + + ++  +     + 
Sbjct: 212 EEMQQQALNIANGDYSNQVKIYSDDELGQLGKAFNTLSIRVERSQEESDSERRRLDSVLS 271

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G + + N    S    +E  +  G  I  +        +         
Sbjct: 272 HMTDGVLAADRHGNVNVVNQMALSFLNVKEKDV-IGEPINKVLGLNESAQDLIANQKEIV 330

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             + S   +   L  +  L+       S        ++    +VT+  + E         
Sbjct: 331 VTVNSGTRDEMILHASFSLIKRVTGFVS-------GSVCVLHDVTEQQKNE--------- 374

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                  +  FV +VS+ELR+PLT++  + + L             Q+++     +  ++
Sbjct: 375 -----NSQKQFVSNVSHELRTPLTSLRAYIEALNEGAWKDPTI-APQFLQVTQEETERMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-------RIKVISD 674
            ++ND+L L+ +D G+ K++   + LND ++ +       +  +          I+    
Sbjct: 429 RMINDLLSLSRMDRGVSKMDLEWVNLNDFVSHILNRFDMIVKTDKNTDKKKKYTIRRELG 488

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D  +++Q+   I++NA+ +S  G  + ++  ++    I S+ + G  IP   
Sbjct: 489 NQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLVQNQNHVILSISDQGLGIPRKD 548

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F+RF          + G GLGL+I +  +  H G +   SS+   +T    +P +
Sbjct: 549 LGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGNGSTFYISLPYE 607


>gi|194291671|ref|YP_002007578.1| sensor hybrid histidine kinase [Cupriavidus taiwanensis LMG 19424]
 gi|193225575|emb|CAQ71521.1| putative sensor hybrid histidine kinase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 649

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 16/376 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           T     V +Q   +D + + V +     R+   N ++  L       L  G  +  + + 
Sbjct: 69  TALQDCVAIQTALLDGIPQPVYLRDAALRLVACNRSYEELLGATRGSLL-GQPLDAVLSA 127

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT----- 541
                + ++    +  +I             L   +  VL + + PL  A   +      
Sbjct: 128 HPLATDMAELARDYRQVIADGAPLHADRCLRLGDRTLHVLNW-LTPLRGADGTVKGLAGG 186

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++T+       L +       A+  K++F+  VS+E+R+P+  I G  +L     L  
Sbjct: 187 CVDLTERHEMLAELAQAKTEAEAANRAKSAFLASVSHEIRTPMNAITGMLELTLAQSL-- 244

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +Q   +     S+  LL L++DILDL+ ++AG  +++ +   L  L+++        
Sbjct: 245 LPDEQRLQLLTAHKSAVGLLALIDDILDLSKLEAGKFRIHPAPTSLPGLVDDTLLIFGPG 304

Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG-- 717
             +  + +       L      D  R  QI + ++SNA+ F+  G+  V L A       
Sbjct: 305 AAQKGLPLTSGVSAALAPLHQVDALRFRQILANLVSNAVRFTDSGTVHVRLDAQSTGDGI 364

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSI 774
            D I +V + G  IP +    +F  F       R    G GLGL+I        GG +++
Sbjct: 365 QDVILTVSDTGIGIPFEAQARLFQPFEQVHGCARSHAGGTGLGLAICRRLAKAMGGRITL 424

Query: 775 SSSDEGVTTINCRIPS 790
           +S     T +   +P 
Sbjct: 425 TSQPGRGTRVVVSLPL 440



 Score = 43.0 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 50/139 (35%), Gaps = 22/139 (15%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET----------EGIVFQK 235
             L + +++   L D +   V+ RD A  ++  N SY++              + ++   
Sbjct: 69  TALQDCVAIQTALLDGIPQPVYLRDAALRLVACNRSYEELLGATRGSLLGQPLDAVLSAH 128

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY---KIVRVLNSFGE---- 288
            +         + ++ +   + L  + C  +     G+   +    +  +  + G     
Sbjct: 129 PLATDMAELARDYRQVIADGAPLHADRCLRL-----GDRTLHVLNWLTPLRGADGTVKGL 183

Query: 289 AGIAIDVSKEITVNDQLTH 307
           AG  +D+++   +  +L  
Sbjct: 184 AGGCVDLTERHEMLAELAQ 202



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 9/146 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + D +     +L  +   + + D    L   NRS+ EL       L   P +  L   
Sbjct: 69  TALQDCVAIQTALLDGIPQPVYLRDAALRLVACNRSYEELLGATRGSLLGQPLDAVLSAH 128

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-QTLHVIVTSNPRGGTIWMFE 417
             + +      +++        V            L  G +TLHV+    P  G     +
Sbjct: 129 PLATDMAELARDYR-------QVIADGAPLHADRCLRLGDRTLHVLNWLTPLRGADGTVK 181

Query: 418 NLTVQ-VDLETKYNTLVKVQGETIDH 442
            L    VDL  ++  L ++     + 
Sbjct: 182 GLAGGCVDLTERHEMLAELAQAKTEA 207


>gi|148975382|ref|ZP_01812306.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
 gi|145965306|gb|EDK30556.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
          Length = 796

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 129/258 (50%), Gaps = 15/258 (5%)

Query: 540 LTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            ++    + +R + + L +  E    A+  K+ F+ ++S+E+R+P+  IIG + LL    
Sbjct: 213 NSYNQSIERIRQQYQELIKAKETAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM- 271

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              +  +Q +YV  ++ SS  LL+L+NDILD + ++AG ++L    + +  +  +V+ + 
Sbjct: 272 --DMPKEQKEYVNMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTF 329

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             K  +  +R ++  D K+    + D  +L Q+ + ++ NA+ F+ +G  V L    +  
Sbjct: 330 RVKAEQKGLRFQLEIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTERGH-VTLSLRLEKV 388

Query: 718 -------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                     F V ++G  I ED  KSVF++F        R   G GLGL+I +  + L 
Sbjct: 389 IEPEQKLRVRFEVADSGIGIAEDKQKSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLM 448

Query: 769 GGHVSISSSDEGVTTINC 786
           G  + ++S +   +T   
Sbjct: 449 GSKLELTSIEGKGSTFYF 466


>gi|300088283|ref|YP_003758805.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528016|gb|ADJ26484.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 581

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 149/377 (39%), Gaps = 24/377 (6%)

Query: 416 FENLTVQVDLETKYNTLVKVQGET-IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  ++  +    +  +  K +  T ++++ +GV +   +G I  +N     L+  E+  +
Sbjct: 228 FNEMSSSLKSTMEAVSAEKAKLSTVLNNMVDGVILTDKEGIISTANRTASKLFGFEDKNV 287

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           S  + I  +              ++ A ++      ++        ++   +     P+ 
Sbjct: 288 SGKSIIEVVRE-----------HEVDAVLVRCLQTSKEQSAQFESAVTKRFIRVIAAPVI 336

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + +     +   D              LR    ++   V ++S+ELR+P+T I    + L
Sbjct: 337 DGKPSEILLLFQDLTE-----------LRNLQTMRKELVGNISHELRTPITGIKAMVETL 385

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +         ++  I +    L   V+++ +L+ ++ G  +L    + LN L+ +V
Sbjct: 386 HDGAIDD-KEAAKDFLTRIESEVDRLAQTVSELTELSRIETGKAELRLEPLDLNVLVKDV 444

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + +        + +       L   +ADR R+ Q    ++ NA+ F+  G  V L    
Sbjct: 445 IEQLQPLAERQQVTVSATLAKDLPEVLADRDRIRQTIINLVHNAVKFNRVGGNVKLYTKT 504

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +N + I  + + G  I +D    VF RF        + G GLGL+I +  I  H G + +
Sbjct: 505 NNNEVIVDISDTGIGISKDDLPHVFERFYKADRARSKSGSGLGLAIAKHTIQAHNGKIWV 564

Query: 775 SSSDEGVTTINCRIPSK 791
           +S     +T +  +P K
Sbjct: 565 ASEQGNGSTFSFSLPLK 581



 Score = 44.5 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S    V+ +      +L+N+   + + D+   +   NR+  +L+     F   N S   +
Sbjct: 237 STMEAVSAEKAKLSTVLNNMVDGVILTDKEGIISTANRTASKLFG----FEDKNVSGKSI 292

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG---T 412
           +E +R        +      +   + ++S+ T          + + VI      G     
Sbjct: 293 IEVVREHEVDAVLVRCLQTSKEQSAQFESAVTK---------RFIRVIAAPVIDGKPSEI 343

Query: 413 IWMFENLTVQVDLETKYNTLV 433
           + +F++LT   +L+T    LV
Sbjct: 344 LLLFQDLTELRNLQTMRKELV 364


>gi|108756798|ref|YP_628526.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108460678|gb|ABF85863.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 689

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/690 (16%), Positives = 232/690 (33%), Gaps = 98/690 (14%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
              + +        +E      +  ++ + +++ + LF             G  L  N +
Sbjct: 35  GQHWSQDTRSRPAVTEPRSLREQLAEVPDSLALLEGLFTHSPVPYAVFTSDGHCLLTNPA 94

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-----KS 276
           +          F  A      LFK+E+  ++         + + +  +  G         
Sbjct: 95  FLAM-------FGAAPPPEYSLFKDELLAQL--------GYAKLLQRVVSGERVQTPVFW 139

Query: 277 YKIVR----------------------VLNSFGEAGIAI---DVSKEITVND----QLTH 307
           Y +                        V +S G   +A+   D++ E+   +    +  +
Sbjct: 140 YDVKELAHVRAPAEARRIAISCTGFPLVASSGGVTHLAVAYKDMTAELAAREAAQVERRN 199

Query: 308 TYEILHNLTVAIAIF-DQNRYLQFHNRSFVELW---------------EIDLAFLATNPS 351
             ++     VA+++        +F N    +L                ++    L+ +  
Sbjct: 200 LLQVFTQAPVALSVLRGYELRYEFANPLLQKLMGGRELNGRTQEEAIPDLSPELLSLHRG 259

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRG 410
             E  E    A + P  ++++         +    E  +D   L +G             
Sbjct: 260 VLETGERAI-AREYPITIDYEGAGRVETRFWNIIFEPLRDERGLVDG------------- 305

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKT 469
             + +  ++T QV       +  K     +D +   V +  P  G +  SN A   L+  
Sbjct: 306 -LVTLAFDVTEQVFARQAVESQQKWLEAVLDLMPMPVVMADPASGDLNFSNAAADRLYGL 364

Query: 470 EENR----LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
              +     + G H  ++     R  +  D     AA     D             + S+
Sbjct: 365 HIPKDVPTTAYGEHF-HVTDLEGRRLSVDDLPSNRAARGERLDGLEVHWHTPAGRYALSI 423

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
              ++ P  +    +  +   D  R    L    + L++A   ++ F+   S+EL++PLT
Sbjct: 424 SSETL-PAMHGHPSVVVIPFLDITR----LKTVEQHLQEAVRARDEFLSVASHELKTPLT 478

Query: 586 NI----IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           ++      F   +      +L  +  + VE +    T L  LV+ +LD++ +  G +KL 
Sbjct: 479 SLGLRLQSFVRAIHADPESALAQRHGREVEAMRRQVTRLAELVDGLLDVSRISTGRLKLQ 538

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +  + L  L++EV      +       + V           DR RL Q+ S +LSNA+ +
Sbjct: 539 FEPVDLPSLVSEVAARFELEAARAGCELHVTQAEGFEGVW-DRLRLEQVVSNLLSNALKY 597

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
              G+ V +  A         VK+ G  I  +    +F +F          G+GLGL + 
Sbjct: 598 G-AGAPVHIDVAPGGMGARLRVKDRGIGIDPEAHARIFQKFERAVSERNYGGMGLGLYVT 656

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + +   GG + + S      T    +P +
Sbjct: 657 RTLVEALGGTIQVDSQPGEGATFVVELPLQ 686


>gi|42523783|ref|NP_969163.1| hypothetical protein Bd2335 [Bdellovibrio bacteriovorus HD100]
 gi|39575990|emb|CAE80156.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 713

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 117/250 (46%), Gaps = 8/250 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    +  L    +   +A   K+ F+  +S+E+R+PL +++G  +LL+ ++   L+  Q
Sbjct: 303 ELNETQGQLKSAKDQAEEASRAKSEFLARMSHEIRTPLNSVLGMLELLRETQ---LSKDQ 359

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+   S +   L  L+ND+LD + ++A  + +   +  ++  +  V   +  K  E  
Sbjct: 360 ERYLTLFSHAGENLKALINDLLDFSKIEAKALTVENVSYNIHSTVRSVFDILQIKAEEQG 419

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD-NGDFIFSV 723
           +  ++     +      D  RL Q+   ++ NA+ F+++GS  V L+  +D     +  V
Sbjct: 420 LHFELHISKDVPPLQWGDPTRLRQVLFNLIGNALKFTNEGSVKVKLELTKDAPEQLLIEV 479

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP +    +F+ F         +  G GLGL I ++ + + GG + + S     
Sbjct: 480 QDTGIGIPRERQSKLFSSFAQGDPTIARKYGGTGLGLVISKNLVEIMGGTMEMKSLAGRG 539

Query: 782 TTINCRIPSK 791
           TT    +P +
Sbjct: 540 TTFKILLPHQ 549


>gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
          Length = 1183

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 137/293 (46%), Gaps = 11/293 (3%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEK 558
           I S   + +++   +E  S ++LE   + +   + +    +   ++  E     + L   
Sbjct: 417 IESLSKKTENIDTYIETESSNILEIDSLLMNFNKMIKEIKSNKKNLEIEVDNRTKELEIA 476

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                ++ + K+ F+ ++S+E+R+P+  IIG + L   ++   LN KQ  Y+E I   + 
Sbjct: 477 KIKAEESTKAKSEFLANMSHEIRTPMNGIIGMSHLALQTR---LNDKQKNYIEKIDICAK 533

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LLN++NDILD + ++AG + L      L + +  +   I   ++E N+ + V     +G
Sbjct: 534 NLLNILNDILDFSKIEAGKLNLEKVEFNLFETIENIVNIIDFSVYEKNLELVVSYGTDVG 593

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            +F  D  RL QI + +LSNA+ F++ G   +     D   + F +K+ G  + E+    
Sbjct: 594 KNFYGDNLRLAQILTNLLSNAIKFTNDGQIGVYITKIDINRYQFEIKDTGIGLTEEQQTK 653

Query: 738 VFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F         +  G GLGL+I +  I L  G + + S     +    +I
Sbjct: 654 LFQSFSQADGGTTRKYGGTGLGLTISKQLIELMNGKIWVESQINVGSRFIFQI 706


>gi|294505916|ref|YP_003569974.1| sensory transduction histidine kinase [Salinibacter ruber M8]
 gi|294342244|emb|CBH23022.1| sensory transduction histidine kinase [Salinibacter ruber M8]
          Length = 1106

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/679 (16%), Positives = 245/679 (36%), Gaps = 77/679 (11%)

Query: 172  DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
            DG  +E+ E   + ++L      ++ L + L+  + H    G+I + N +       E  
Sbjct: 435  DGAVTEITEQKRQEQQLRRSRERWRRLVEKLEDGL-HISVDGEIRYINPAGAAIVGAE-- 491

Query: 232  VFQKAIGESRKLFKEEIKKRM-ISSSALEKNFCETVSTLE--------HGNNKSYKIVRV 282
              +  +G S + F    + +  +    L   + E  ST           G  +  +   V
Sbjct: 492  TPEDIVGRSLQEFVVSERTQQDVVEDRLRTVYQERASTPPRELEIIGLDGARRVIESYTV 551

Query: 283  LNSF----GEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRS 334
               F        +  D++++  +   L         I  N++  I     N  L + NR+
Sbjct: 552  PIEFDGEQAGQTVFRDITEQKEMEQALREREARLRSITENVSDGIYRSTPNEGLVYANRA 611

Query: 335  FVELWEID--LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            F +++  +   A L  +P             +L    + ++    I       +  +  +
Sbjct: 612  FADIFGYESVEAILQIDPI------------ELYANPDARSENRRITKEQDHIDAAEAEF 659

Query: 393  HLPNGQTLHVIVTSN---PRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHL-- 443
               +G T   +V++       G +  ++    ++T Q +         +           
Sbjct: 660  RRKDGSTFTGLVSATTVRDENGEVLYYDGAITDITEQKEQARTLRDRQQKLESLYTATRH 719

Query: 444  ------SEGVA---------VFG---------PDGRIKLSNPA------FRSLWKTEENR 473
                   + VA         VF           DGR+     A        ++       
Sbjct: 720  LLRAETPDAVATRIQDVLQDVFDYPLAGVDFAEDGRLVPVEGAIASPGQMPTIQSLSAGG 779

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             S G        T      E+   D+    + S         G + +   S   +    L
Sbjct: 780  DSIGARAYRSGETVVVQNVEALDNDVAYGGLRSVACAPMGTHGVVLMGQTSHDAFDAFNL 839

Query: 534  PNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + ++T+  V  D +  E+ L E  E   + +E+K++F+ ++S+E+R+PLT+IIGF +
Sbjct: 840  RLVEVLVTYAAVVLDRLGREQKLREAKETAEQVNEMKSAFLANMSHEIRTPLTSIIGFAE 899

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
             +     G  +   S++   I      LL  ++ +L+L+ ++A  M+L  + + + +   
Sbjct: 900  AIGDEVSGG-DPTVSRFAGLIEKGGRRLLETLDAVLNLSKLEAEEMELALAPLNVAEQAA 958

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +       +  +  I ++V          AD   L  +   ++SNA+ ++  G  V ++A
Sbjct: 959  DTGALFEQQAEKAGIDLRVDVPSGPLWARADEGALRIVLRNLVSNAVKYTGDGGRVWIRA 1018

Query: 713  ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
             R     +  V++ G  +      ++F  F   +     +  G GLGL++ +  ++   G
Sbjct: 1019 RRAEDQAVLEVEDTGQGMDPAAVSTLFEAFKQASEGKGREYEGTGLGLAVTKQAVDQMEG 1078

Query: 771  HVSISSSDEGVTTINCRIP 789
             + + +     +    R+P
Sbjct: 1079 TIDVDTEKGVGSRFVVRLP 1097



 Score = 75.0 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/420 (9%), Positives = 128/420 (30%), Gaps = 29/420 (6%)

Query: 169 LSLDGIYSELAETTLK----CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
             +     +  +   +     + L    ++   + +++   ++       +++AN +   
Sbjct: 303 RDITDRKRQERQLRKEKQKTEEALQARDALLGSITENISEGIYRSTPDDGLVYANEALAD 362

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS-------- 276
                 +            + +  ++  +     + N  + ++ +E    ++        
Sbjct: 363 MLRHRSVDALLEADP-VHFYADPDQRAQV---IQQSNRNDGITGVEVEFRRTDGTTFTGL 418

Query: 277 YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
                V    G      G   +++++     QL  + E    ++  L   + I   +  +
Sbjct: 419 LSATTVRGPDGAVQYYDGAVTEITEQKRQEQQLRRSRERWRRLVEKLEDGLHI-SVDGEI 477

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           ++ N +   +   +        S  E +   R+   + E      ++E   +  +  E  
Sbjct: 478 RYINPAGAAIVGAETPEDIVGRSLQEFVVSERTQQDVVEDRLRTVYQERASTPPRELEII 537

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
                    ++  V +  +       +F ++T Q ++E              +++S+G+ 
Sbjct: 538 GLDGARRVIESYTVPIEFDGEQAGQTVFRDITEQKEMEQALREREARLRSITENVSDGIY 597

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              P+  +  +N AF  ++  E            + A                 I  +  
Sbjct: 598 RSTPNEGLVYANRAFADIFGYESVEAILQIDPIELYANPDARSENRRITKEQDHIDAAEA 657

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           + R+    T       ++  + +   N + +     +TD    +       +  +K + +
Sbjct: 658 EFRRKDGSTFT----GLVSATTVRDENGEVLYYDGAITDITEQKEQARTLRDRQQKLESL 713



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 10/173 (5%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G   M  N          ++   +      +H  +   +  PDG +  +N         E
Sbjct: 169 GLAEMIVNELELHRQADAWDRARQQYEAIFNHTYQFTGLLTPDGILVEANDTALEFGGLE 228

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYS 529
              +           T            L AA+  + + E    +  ++   +   +++S
Sbjct: 229 REEVVGTPFWD----THWWQTGPETQQKLRAAVEQAAEGEFVQYEADVQGADETRTIDFS 284

Query: 530 IIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           I P+ +    +T       ++TD  R ER L ++ +   +A + +++ +  ++
Sbjct: 285 IRPVTDGDGSVTMLIPEGRDITDRKRQERQLRKEKQKTEEALQARDALLGSIT 337


>gi|163793563|ref|ZP_02187538.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181365|gb|EDP65880.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 1217

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 153/378 (40%), Gaps = 23/378 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
               +     +    T+D +  G+ +   +  ++LSN  F  L+   +     GT I  +
Sbjct: 428 QSAARLADEQERLRLTLDQMPGGLVILDRNLNVRLSNRQFTQLYGLPDALSEEGTPIEAL 487

Query: 484 AATCSR---YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
               +    Y  ++D   +   I+     E +  +  L      V      P  +   +L
Sbjct: 488 LRFRAERGDYGPDADDDHIARRIVDYRSKEARRYEDIL--PGGRVAAVFRSPTADGGVVL 545

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +VT+       L +       A   K +F+  +S+E+R+P+  ++   +LL  +   
Sbjct: 546 VVADVTE-------LKDAQSRAEAAAAAKAAFLATMSHEIRTPMNGVMSMAELLDHTV-- 596

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q      I  S+  LL ++NDILD + ++AG + +      L +L+ +V + +A 
Sbjct: 597 -LDGEQRGMTRVIRQSAEALLTVINDILDFSKIEAGRLPIERVPFELGELVEDVAELLAP 655

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAAR 714
           +  ++ + + +     L    + D  RL QI   +  NA+ F+  GS  I     +  A 
Sbjct: 656 RADDHGLDLIIELAPNLPERVLGDPTRLRQILVNLGGNAVKFTEAGSVRIAARPDVPVAG 715

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D       V + G  + ++    +F  F        RR  G GLGLSI      L  G +
Sbjct: 716 DTLRLCLEVTDTGIGMTDEQMTRLFEPFAQADSSTARRFGGTGLGLSICLRLAELMDGAI 775

Query: 773 SISSSDEGVTTINCRIPS 790
           ++SS  +  +T    +P 
Sbjct: 776 TVSSVPDAGSTFRVELPL 793



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 6/200 (3%)

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN----KSYKIVRVLN 284
            GI+  +AI       ++ + +   +  A+     E    +          + +I R ++
Sbjct: 358 AGILTGRAITLPVVALRDSMLRFTETRRAIAVPGSERRDEIGDAARSFSGLTEEITRYVD 417

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
              +    ++ S     ++Q       L  +   + I D+N  ++  NR F +L+ +  A
Sbjct: 418 ELDKEHRQVEQSAARLADEQ-ERLRLTLDQMPGGLVILDRNLNVRLSNRQFTQLYGLPDA 476

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                   + LL F           +       I   Y+S E  +    LP G+   V  
Sbjct: 477 LSEEGTPIEALLRFRAERGDYGPDADDDHIARRIVD-YRSKEARRYEDILPGGRVAAVFR 535

Query: 405 TSNPRGGTIWMFENLTVQVD 424
           +    GG + +  ++T   D
Sbjct: 536 SPTADGGVVLVVADVTELKD 555


>gi|330504152|ref|YP_004381021.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328918438|gb|AEB59269.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 916

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E      + K+ F+  +S+E+R+PL  ++G   LL+ +    ++  Q  YV+ IS+
Sbjct: 395 RRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRET---PMDRSQRFYVDTISS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S + L+ ++NDILD A +++G + L      L D+++E       +  +  +R+ V  + 
Sbjct: 452 SGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKRLRLYVSLEN 511

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSI 730
            +      D  RL Q+   +LSNA+ F+++G   V +    D+      +F+V ++G  I
Sbjct: 512 GVPRRIQGDPTRLKQVLMNLLSNALKFTAEGHVAVSVSRRSDSHGKPHLVFAVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            E     +F  F        RR  G GLGL+I +  + + GG + + S+    T     I
Sbjct: 572 SEQALAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTLGQGTRFAFDI 631

Query: 789 PS 790
           P 
Sbjct: 632 PL 633


>gi|225159367|ref|ZP_03725663.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224802028|gb|EEG20304.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 678

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 125/259 (48%), Gaps = 10/259 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             + + V++T+  R E+ L    +    A  +K+ F+ ++S+E+R+P+  IIG + LL  
Sbjct: 17  GYVGSVVDITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGIIGMSGLLLD 76

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+ +Q ++ E +  S+  LL ++NDILD + +++G + ++     L  ++ +   
Sbjct: 77  TR---LSPEQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFDLRTVVEDTLA 133

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +  +  +  I +       L +    D  R+ QI + ++ NA+ F+ +G   V +   +
Sbjct: 134 LLGERAIDKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTERGEVSVTVTRIQ 193

Query: 715 DNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
           +      F  SV++ G  + +D+   +F  FV       R   G GLGL+I    I + G
Sbjct: 194 ETNTTLHFRISVRDTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLAISRQLIEMMG 253

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +  ++     +T    +
Sbjct: 254 GRIGFTTKPGRGSTFWFDL 272


>gi|255656614|ref|ZP_05402023.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 758

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 24/365 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L       +  +S G+     +G I L N   + + K+E N+L  G +I  +  
Sbjct: 80  EVQYKHLQ--LKSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIK 137

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                  E +        I S D+E       +    D V +  + P+    T    +  
Sbjct: 138 -------EEEILKQILRFIGSKDNE----TANITTKDDIVYKIKVDPVYLQNTNNVIIGS 186

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             ++              K + +++ FV +VS+EL++PLT+I GF + LK+++   +N++
Sbjct: 187 IVNIE-------DITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTR 239

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            ++++E I + S  L  L++DIL L+ V+     L    +V+ D+  EV +       E 
Sbjct: 240 -NRFLEIIESESDRLKRLIDDILLLSFVE-NKDTLLMENVVVYDVFKEVYEITQHSASEK 297

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI +    D K  S ++++  + Q+F  ++ NA+ ++     V +   +D    +  V +
Sbjct: 298 NIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVID 357

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP++  + +F RF        R   G GLGL+I +  +    G + + S     + 
Sbjct: 358 NGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSE 417

Query: 784 INCRI 788
               I
Sbjct: 418 FIVTI 422



 Score = 38.4 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V  +      IL +++  I   D N  +   N    E+ + +   L    + + +   
Sbjct: 79  EEVQYKHLQLKSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVV--- 135

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           ++    L + L +   K+N  +   + +   D  +      +++  T+N   G+I   E+
Sbjct: 136 IKEEEILKQILRFIGSKDNETANITTKD---DIVYKIKVDPVYLQNTNNVIIGSIVNIED 192

Query: 419 LTVQVDLE 426
           +T +V LE
Sbjct: 193 ITKKVKLE 200


>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
          Length = 831

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 128/261 (49%), Gaps = 10/261 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q    + +VT     E  L +  EA   A   K  F+ ++S+E+R+P+  I+G TDLL
Sbjct: 138 WRQLAGIYRDVTRHRLRELELLQAKEAAEAASRAKGEFLANMSHEIRTPMNGILGMTDLL 197

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S L     +Q  Y++ + +S+  LL L+NDILD + ++AG + L      ++ L+ E 
Sbjct: 198 LDSALA---PEQRDYLQTVKSSAEALLTLLNDILDFSRIEAGRLSLEEIDFSISGLVAET 254

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TVI 709
            +++A + H+  + +       + + +  D  R+ Q+ + ++ NA+ F+ +G       +
Sbjct: 255 LRTLALRAHQKGVELFFDVAPDVPAVLKGDPARIRQVLTNLVGNAIKFTERGEIELDVTV 314

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           +     +   + +V++ G  IP +  +++F  F    +   R   G GLGL+I +  + L
Sbjct: 315 VDTDDRHATLLVTVRDTGIGIPAEKTEAIFGAFAQADNSTTRKYGGTGLGLAICKHLVEL 374

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG + + S+    +  +  +
Sbjct: 375 MGGELRVQSTLGEGSRFSFSL 395


>gi|323490449|ref|ZP_08095656.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
 gi|323395853|gb|EGA88692.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
          Length = 465

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 157/377 (41%), Gaps = 29/377 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            + +T    +E       +     I+++   + +    G + L N  F   +      + 
Sbjct: 114 LQEITAIRVMEQ------ERLKTLIENMGSALIMIDKQGAVSLVNKPFSEEFGLSPEIV- 166

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                        ++Y E          I S        +  +E LS   L+     +  
Sbjct: 167 -----------LGKFYKEIQVPIEVENFIESVFMTETHSRVQIEFLSG--LKMKNFNVYG 213

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +         V   + +TE    L+K ++I+  FV +VS+ELR+P+T+I GF++ L 
Sbjct: 214 APVIGEHERWLGIVIVFQDITE----LKKLEQIRKDFVANVSHELRTPVTSIKGFSETLL 269

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                        ++E +   S  L  L+ND+LDL+ V+    ++N     +  ++   +
Sbjct: 270 DGAYKD-TETLLSFLEIMHTESNRLEMLINDLLDLSKVEQSGFRVNAQPTNMEAVIKRAR 328

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + I  K+ E +I++K+    +  + + D  RL+Q+   +L NA+ +SS  + + ++  R 
Sbjct: 329 EMIQPKIDEKSIQLKLEI--QPVTVLGDANRLIQVMMNLLINAVTYSSNYTEITIRLFRK 386

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           +   I  V++ G  I       +F RF        R   G GLGLSIV+  I  H GHV 
Sbjct: 387 DNRAIIQVEDQGIGIESSEIGRLFERFYRVDRARSRNSGGTGLGLSIVKHLIEAHHGHVE 446

Query: 774 ISSSDEGVTTINCRIPS 790
           + S+    TT    +P 
Sbjct: 447 VDSTVGVGTTFTIYLPL 463



 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 291 IAIDVSKEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A ++ +   +        + L  N+  A+ + D+   +   N+ F E + +    +   
Sbjct: 110 LARNLQEITAIRVMEQERLKTLIENMGSALIMIDKQGAVSLVNKPFSEEFGLSPEIV--- 166

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                L +F +      E  N+    E++F     S    +       +  +V       
Sbjct: 167 -----LGKFYKEIQVPIEVENF---IESVFMTETHSRVQIEFLSGLKMKNFNVYGAPVIG 218

Query: 410 G-----GTIWMFENLTVQVDLET 427
                 G + +F+++T    LE 
Sbjct: 219 EHERWLGIVIVFQDITELKKLEQ 241


>gi|298376091|ref|ZP_06986047.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298267128|gb|EFI08785.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 757

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 164/381 (43%), Gaps = 23/381 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   +       +     ++   +  A        + SN  F       ++       
Sbjct: 382 SHKKQAQESLRKEKEFLSLALES-GDIFA-------FRYSNGVFEFDHDFYKSLDMLIKP 433

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
           I +     S +  + + +     ++ +    RK  +             E+      N Q
Sbjct: 434 ITSTQFQESIHPEDREDFIQHKHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYAQAKNGQ 493

Query: 538 --------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                        +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+G
Sbjct: 494 DSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVG 553

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++LL +    S N +  ++++ IS +S +LL L+NDILDL+ +++G M    +   LN+
Sbjct: 554 FSELLTSDMEISPNER-DEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTLTNCDLNE 612

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
           LL+ + ++    M +  + +K+          AD  RL Q+ + +++NA  F+++G   +
Sbjct: 613 LLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILI 671

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                +D      SV + G  IP D    VF RF       Q  G GLGL+I +  I   
Sbjct: 672 KYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLDEFAQ--GTGLGLAICQIIIEHF 729

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG++++ S +   +T    +P
Sbjct: 730 GGYITLESKEGEGSTFIVTLP 750


>gi|255029104|ref|ZP_05301055.1| two-component sensor histidine kinase [Listeria monocytogenes LO28]
          Length = 581

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 156/370 (42%), Gaps = 29/370 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 227 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 273

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 274 KPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 331

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 332 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLL 383

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 384 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKN 443

Query: 667 IRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           I++ +I +  + S     DR +L QI   +LSNA++++     V +K      + I  V 
Sbjct: 444 IQV-IIPEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVT 502

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +
Sbjct: 503 DNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGS 562

Query: 783 TINCRIPSKE 792
           T    +P K+
Sbjct: 563 TFRVTLPKKD 572


>gi|154491989|ref|ZP_02031615.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC
           43184]
 gi|154088230|gb|EDN87275.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC
           43184]
          Length = 794

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 132/238 (55%), Gaps = 7/238 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  +   ++D +K++F+ ++S+E+R+PL  I+GF++LL    +     ++++Y+ 
Sbjct: 409 EIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLL---TMAEDEEERNEYIN 465

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS+++ +LL L+NDILD+A ++AG ++   S I +N LL++++QS   K  E  ++I  
Sbjct: 466 IISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPE-GVQISF 524

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        ++D+ RL Q+ +  ++NA+ F+ +GS +       +   +  V++ G  I 
Sbjct: 525 VEKMPYCIIMSDKNRLAQVITNFINNAIKFTKEGS-IRFGYRHKDDKLLLYVRDTGCGIE 583

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    VFNRFV      Q  G GLGL+I +  +   GG + + S     +T    +P
Sbjct: 584 PEKKDLVFNRFVKLNSFAQ--GTGLGLAICQMIVKKMGGEIGVESQLGKGSTFWFTLP 639


>gi|75908887|ref|YP_323183.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702612|gb|ABA22288.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 708

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 154/391 (39%), Gaps = 23/391 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENR 473
           + + +  +  +        +      + + + V     +G     N  +        E  
Sbjct: 174 LQQEIHERQRIVEILRESEERYRYLAEAIPQLVWTADANGECDYFNQNWCDYTGLTLEES 233

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L  G           R Y           +  +    +++  G+   L    L     PL
Sbjct: 234 LGSGWLAALHLEDLERSYETWSKAVETGTLYENEYRFKRAADGSYRWLLGRGL-----PL 288

Query: 534 PNAQTMLTFVNVT------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + Q  +     T            +  R              A+ IK+ F+  +S+ELR
Sbjct: 289 KDHQGRVVKWFGTCTDIHEQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELR 348

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+G++ LL+  KL    + Q+  +  I  ++T+ + L+ D+LD++ +  G + +N
Sbjct: 349 TPLNAILGWSKLLQERKLEPARTFQA--LATIERNATLQVQLIEDLLDISRILQGKLVIN 406

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            + + L  ++    +++        I++      K+G  + D  RL Q+   +LSNA+ F
Sbjct: 407 ITKVNLVIVILTALETMRLAAESKLIQVSTNFPSKMGQVMGDSARLQQVVWNLLSNAVKF 466

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           + KG  + +   + +G     V + G  I  +    VF+ F        RR  G+GLGL+
Sbjct: 467 TPKGGKIEVSLEKVDGYAQIVVSDTGKGIKPEFLPYVFDYFRQADSSSTRRFGGLGLGLA 526

Query: 760 IVESFINLHGGHVSISS-SDEGVTTINCRIP 789
           IV   + +HGG V+  S  +E   +   R+P
Sbjct: 527 IVRKIVEIHGGTVTAQSLGEEQGASFTVRLP 557



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 166 LRILSLDG----IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           +R   +      +  E+ E     + L      ++ L +++  LVW  D  G+  + N +
Sbjct: 162 IRTNEITNANEKLQQEIHERQRIVEILRESEERYRYLAEAIPQLVWTADANGECDYFNQN 221

Query: 222 YKKNTETEGIVFQKAIG---------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
           +    +  G+  ++++G         E  +   E   K + + +  E  +    +    G
Sbjct: 222 W---CDYTGLTLEESLGSGWLAALHLEDLERSYETWSKAVETGTLYENEYRFKRAA--DG 276

Query: 273 NNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEI 311
           + +    + + + +  G      G   D+ ++  + ++     E+
Sbjct: 277 SYRWLLGRGLPLKDHQGRVVKWFGTCTDIHEQKQILEERARLLEL 321


>gi|332527595|ref|ZP_08403642.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
            JA2]
 gi|332111998|gb|EGJ11975.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
            JA2]
          Length = 1425

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/688 (16%), Positives = 237/688 (34%), Gaps = 84/688 (12%)

Query: 169  LSLDGIYS--ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
             SL    +  +      + ++    + +   + +     ++ +D  G  L+ N       
Sbjct: 328  RSLSNRRALADAERERAEERERMRALQLLDTVAEHAGEAIFAKDLDGRYLFVNRI---AC 384

Query: 227  ETEGIVFQKAIG-ESRKLFKEEIKK------RMISSSALEKNFCETVSTLEHGNNKSYKI 279
            E  G+  ++ IG     +F  +         R+         F +T+ T          +
Sbjct: 385  ERSGLSREQLIGQRDVDVFPPDTAAAYAADDRLTLRDGNAMTFEQTMPTPNG--VLHLAV 442

Query: 280  VRVLNSFGE------AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
             +     G+       G+A D++     E  + +       +   L   I +   +  + 
Sbjct: 443  TKAPLRDGDGRIVGLVGVASDLTALRRGEQALRESEARFRSVFEVLNEGIVVRAPDGSIV 502

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
              N +   L    +  L     ++   E +  + + P     +   E I +  +  +   
Sbjct: 503  DANPAAERLLLQPVQALRGRRLDELGWEPVNESGE-PSPEGLQRLTEVITASGECRDAEV 561

Query: 390  DTWHLPNGQTLHVIVTSNP--------RGGTIWMFENLTVQVDLETKYN----------- 430
                 P+G+   + V + P            +  ++++T + +   +             
Sbjct: 562  RVRA-PDGRQRWLRVNAEPVRDPDDGRLIAVVASWDDVTERRETTEELRRHRLHLQQLVE 620

Query: 431  --------------TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
                             +      D L   VA +    R + +N  +   +   + ++  
Sbjct: 621  ERTLELKHAIAGLAEAERSARMIADSLPGLVAYWDRQMRCRFANRGYCDWFGMSQEQIIG 680

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                 ++       +  +    + AA         +S         D ++ Y      + 
Sbjct: 681  ----LSMTELLGPEFVRTQADLIRAAFGGELQQYERSAPSRGGEPQDLLVHYVPDRRADG 736

Query: 537  QTMLTFVNVTDS----------VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            Q    +V   D            RA   L  + +    A   K++F+ ++S+E+R+P+  
Sbjct: 737  QVDGFYVMAIDISAQKRAEAGLQRANAELVVERDRAEAASRSKSAFLANISHEIRTPMNA 796

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            IIG   L+             + +  I   +  LL ++ND+LDL+ ++AG ++L      
Sbjct: 797  IIGLAHLMLRDAHADTE---RERLLKIRGQAQHLLQILNDVLDLSKIEAGRLELEAIPFS 853

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            L+ LL    Q++AT+     + + + +D      V D  RLLQ    +LSNA+ F+ KG 
Sbjct: 854  LDTLLARAFQTVATEAQRKGLELVLDTDAVPDRLVGDPTRLLQALLNLLSNAVKFTEKG- 912

Query: 707  TVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             V L+A + +         F+V + G  IP D   ++F  F        RR  G GLGL+
Sbjct: 913  WVRLQARQADHAEGRVLLRFTVTDTGVGIPPDRLGALFQAFEQVDSSTSRRHGGTGLGLA 972

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCR 787
            +     ++ GG V   S+    +     
Sbjct: 973  LTRHMASMMGGEVGADSTPGAGSCFWFS 1000


>gi|330989290|gb|EGH87393.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 998

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 170/390 (43%), Gaps = 21/390 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E       +     ++     + V   +G +++ N ++  ++  +  
Sbjct: 542 AWMRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQRE 601

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  ++     + + I+P
Sbjct: 602 DIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQM----TIYHWILP 657

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  ++++++  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 658 FRDSLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 717

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 718 IGMLELALKRADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERAN 774

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 775 LRRLVESVLRVFDGLARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMG 834

Query: 706 ST-VILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
              ++L+AA            +V+++G  I  +  + +F  F    + GQ  R G GLGL
Sbjct: 835 RIKIVLQAAESPDPQLLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGL 894

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  S   + GG++S+ S     T I+  +
Sbjct: 895 VICRSLCMMMGGNLSLDSVPGQGTRISMNL 924



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L +     + L +     ++ RD+ G +   N SY +         
Sbjct: 544 MRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLR---VFSAQR 600

Query: 234 QKAIGESRK--LFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKS---YKIVRVLN 284
           +  IG+S    +     + R  ++         T   L+     G+ +    + I+   +
Sbjct: 601 EDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRD 660

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   + + L    E     + A + F
Sbjct: 661 SLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTF 702



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 30/271 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  + DQ      ++      I + D+   L+  N S++ ++      +    + + +
Sbjct: 553 AAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGV 612

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L     A +                + +          +     L    +     G I  
Sbjct: 613 LGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTI-YHWILPFRDSLGEVQGIIGG 671

Query: 416 FENLTVQVDL-------ETKYNTLVKVQGETIDHLSEGV-----AVFG---------PDG 454
           + +++ +  L       + + +   + +   +  +S  +     AV G           G
Sbjct: 672 WIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHG 731

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDD- 509
            +  S  A    + +  + L     I +IA   S   +     ++   L  +++  FD  
Sbjct: 732 ELDRS--AIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 789

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +K L   LEL S    +  I PL   Q +
Sbjct: 790 ARQKDLDLVLELDSRINADVLIDPLRFKQIL 820


>gi|325917462|ref|ZP_08179671.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
 gi|325536336|gb|EGD08123.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1253

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 138/798 (17%), Positives = 272/798 (34%), Gaps = 111/798 (13%)

Query: 84   IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH--YIKLSKATEKLRKEGQSF 141
            ++ D   + P + G           D  LL+   W               E+ R  G   
Sbjct: 318  VISDHVQDMPSLQGDFPMEAAQGLRDA-LLANRPWFTTDAMAPGAPDYVAEQYRHSGLRA 376

Query: 142  DLVAET-QNDCAIKIEGRVSGSCAF-----LRILSLDGIYS-ELAETTLKCKKLSNHISV 194
             L     ++   +   G    +        + ++ L      E  +     ++L+   + 
Sbjct: 377  SLAIPLHKHGQLVAAIGVHQRAPRRWLSTEVELVRLVAARCWESMQRAKAQQQLAASEAR 436

Query: 195  FKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGIVFQKA-IGESRKLFKEEI 248
             + L D+L  +++     G   + N  +        T  E   + +A   E  KL  +  
Sbjct: 437  LRRLADTLPQIIFIAGPDGQPQYFNQRWYEYTGLDPTSHENAAWHRAHTAEGLKLSVQAW 496

Query: 249  KKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFG----EAGIAIDVSKEITVN 302
            +  ++ + A E    E       G  + +  + + V    G      G   D+    T  
Sbjct: 497  QDALVDARAYE---IECELLRHDGQARWHLARALPVRGDDGCISEWIGTYTDIHDRRTFE 553

Query: 303  DQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSN 352
             QL         +   +   I + D      + N  +           +D  +      +
Sbjct: 554  QQLRESEIRFRALCETVPAMIWMADAQGACMYWNPRWYHFTGQAEDQALDQGWWDVIHPD 613

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
            D     L              +++ +    +    ++   H  +GQ    I T++P    
Sbjct: 614  DAGRVRL-------------AFEQALERRGEFLAEYRVRRH--DGQYRWCIDTASPHFAS 658

Query: 409  RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-----EGVAV-FGPDGRIKL- 458
             G   G I    +++ +  +E    +   +              + +A+     G I L 
Sbjct: 659  DGRFLGHIGSLTDISERKHIEDATASDRAILSLITTGAPLPLVLDAIALSVEARGEIALY 718

Query: 459  ----------------SNPAFRSLWKTEEN---------------RLSPGTHIRNIAAT- 486
                            S P F S ++ +                  L       +I A  
Sbjct: 719  CSVMVLDEVRHTLSFGSAPHFPSAYRGDFEPSPIGLDGPPCARAAHLGRQIICADIQADP 778

Query: 487  -CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVN 544
              SR++  S    + A  +T        + GTL +  D     S+     A++       
Sbjct: 779  SFSRHHAISATLGIVACCVTPILSSDGQVLGTLNIYYDRPHSPSLREQAMARSASHLAGI 838

Query: 545  VTDSVRAERAL-------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            V +  R +  L       T        A  +K+ F+  +S+ELR+PL  I+G++ L+++ 
Sbjct: 839  VIERTRVDAKLALSLQAETAARGQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQSQ 898

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 N   +  +  I  S+     +++D+LD++ + +G ++L      +  L     + 
Sbjct: 899  NFAPEN--LANGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVEL 956

Query: 658  IATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +        I +++ +  G    F  D  RL Q+ + +LSNA+ F++ G  V +    ++
Sbjct: 957  MQPAALAREIALELDAPAGSELWFFGDAGRLQQVLTNLLSNALKFTASGGNVRVGLDVED 1016

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
            G     V+++G  I  +    VF+RF        RR  G+GLGLSI    ++LHGG +  
Sbjct: 1017 GRLRLCVQDSGIGIAPEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGA 1076

Query: 775  SSS-DEGVTTINCRIPSK 791
            SS+ +         +P +
Sbjct: 1077 SSAGEGKGALFTIVLPFE 1094



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 92/296 (31%), Gaps = 36/296 (12%)

Query: 48  RNSLAKKVNETYSFLSEICDQLS--KYHSLLTENNCLTIVWDGKDETPEIIGQ-LHQRID 104
           R   A+         ++     S  +   L      +  +  G D  P+   Q  ++   
Sbjct: 411 RLVAARCWESMQRAKAQQQLAASEARLRRLADTLPQIIFI-AGPDGQPQYFNQRWYEYTG 469

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRK---EGQSFDLVAETQNDCAIKIEGRVSG 161
           +  T  +  +   W + H    L  + +  +    + +++++  E      ++ +G+   
Sbjct: 470 LDPTSHENAA---WHRAHTAEGLKLSVQAWQDALVDARAYEIECE-----LLRHDGQARW 521

Query: 162 SCAFL--------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
             A           I    G Y+++ +     ++L      F+ L +++  ++W  D  G
Sbjct: 522 HLARALPVRGDDGCISEWIGTYTDIHDRRTFEQQLRESEIRFRALCETVPAMIWMADAQG 581

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN---FCETVSTLE 270
             ++ N  +   T                   +  + R+    ALE+      E      
Sbjct: 582 ACMYWNPRWYHFTGQAEDQALDQGWWDVIHPDDAGRVRLAFEQALERRGEFLAEYRVRRH 641

Query: 271 HGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
            G  +    +   +          G  G   D+S+   + D       IL  +T  
Sbjct: 642 DGQYRW--CIDTASPHFASDGRFLGHIGSLTDISERKHIEDATASDRAILSLITTG 695


>gi|160886358|ref|ZP_02067361.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|260173508|ref|ZP_05759920.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921779|ref|ZP_07918019.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156108243|gb|EDO09988.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|313695654|gb|EFS32489.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 660

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/512 (20%), Positives = 225/512 (43%), Gaps = 43/512 (8%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--AFLATNP-SNDELLEFLRSANK 364
            + I ++L+V + ++D++  +   N S +    I      L  N  +     + ++   +
Sbjct: 14  LHNIFNDLSVGLELYDKDGLMIDVNYSRLRSMGIKDKKDILGYNLFNYTSFSDEIKEQIR 73

Query: 365 LPEQLNW----------KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
             E + +          + +  N+  +     T     +  +  T ++++T +     +W
Sbjct: 74  KGETVRFMAKYDFDDLCRLFPTNLSGIKFFEITVSFVHNDKSEITNYMVITQDITERVLW 133

Query: 415 M--FENLTVQV--------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
              ++NL  +V        + E +   L++     +++++ G+A    D  ++  N +  
Sbjct: 134 QNKYDNLYEEVVRSKKELLESEQRMIHLIRQNELVLNNINSGLAYIANDYIVQWENISLC 193

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           S   + E                +   N        +  + S             L +  
Sbjct: 194 SKSLSYEAYKKGEPCYLTAHNRTTPCENCVMQRARKSGQVESIL---------FNLDNKH 244

Query: 525 VLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           V+E    P+ N Q      ++   +VT+       L +      ++D++K++F+ ++S+E
Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 304

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL    +     ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 305 IRTPLNAIVGFSDLLM---VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 362 LKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 421

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG T+ +   + + +    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 422 KYTSKG-TIEMGYEKIDENIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I ++ +    G +   S  +  +     +P +
Sbjct: 479 ICKAIVEACRGEIGFESEFDKGSLFWAVLPCQ 510


>gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
 gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
          Length = 918

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q+ YVE I++
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDRGQAAYVETIAS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D 
Sbjct: 452 SGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDR 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSI 730
           G       D  RL Q+   +LSNA+ F+++G   V ++   D G     ++SV ++G  I
Sbjct: 512 GVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +
Sbjct: 572 SAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDL 631

Query: 789 PS 790
           P 
Sbjct: 632 PL 633


>gi|282899889|ref|ZP_06307850.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195159|gb|EFA70095.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 638

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 163/393 (41%), Gaps = 29/393 (7%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I+ F ++  +++  E +    +  +   ++ L    ++G  +   + ++ L NP  R
Sbjct: 245 GELIFSFNDMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQVILVNPTAR 304

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++  E   +        +      Y   S   ++   +      ER+S +  + L+  +
Sbjct: 305 RIFAWEGTDV--------VGQNLLNYLPHSVQMEITRTLYEMASGERESAEFRILLVEPT 356

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                I+            +  +S++      +      + +E K+ F+ ++S+ELR+PL
Sbjct: 357 KRTIRIL------LTTVLDSQRESIKGIAITVQDITREVELNEAKSQFISNISHELRTPL 410

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  + + L          ++ +++  ++  +  L  LVND+LDL+ +++G    ++  
Sbjct: 411 FNIKTYIETLHDYGDDLGAKERQEFLATVNHETDRLTRLVNDVLDLSKLESGR-TYHFDG 469

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L   L +  ++      E  I +       L   + +   LLQ+F  ++ NA+ F+  
Sbjct: 470 VDLAQALEQTLRTYQLNAKEKGINLVQELTPNLPLVIGNYDLLLQVFGNLIGNALKFTPA 529

Query: 705 GSTVILKAARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVG 755
           G  V ++A R + +            + + G  I  +  +++F+RF    +R     G G
Sbjct: 530 GGIVAIRAYRVDVNRSGHNSPLVRIEISDTGIGIAPEDQQAIFDRFFRVENRVHTLEGTG 589

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSIV + +  H   V + S     TT    +
Sbjct: 590 LGLSIVRNIMERHHSQVHLVSEVGVGTTFWFDL 622


>gi|16126740|ref|NP_421304.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235523|ref|YP_002517960.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424056|gb|AAK24472.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220964696|gb|ACL96052.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 637

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 94/415 (22%), Positives = 184/415 (44%), Gaps = 30/415 (7%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           GQ L +         ++   ++     ++   KY  + ++     D+L++ VA++ P G 
Sbjct: 96  GQRLRLETMHAELKASLDAKQDAIEDAEVALAKYREVDRLYRLLGDNLTDHVALWSPLGE 155

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
              S+P+   +          G  +    A           +     II S +   + + 
Sbjct: 156 RLYSSPSIERIT---------GYTLEEFMALPPAALVGEADFRRVQGIIRSLEPGGEPVS 206

Query: 516 GTLELL----SDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
              E L    S   +E  YS++   +   ++T  ++T+  R E  + +  +    A   K
Sbjct: 207 ADYESLCKDGSRIWVESTYSLLGDGSGILLVTSRDITERKRLELDIAKALQMAEAASAAK 266

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++++ELR+PLT IIGF ++L+ S+  +LN   ++ V +I  +S  LL++VND+LD
Sbjct: 267 SDFLANMTHELRTPLTAIIGFAEVLRRSR--NLNKTAARQVGHILDASNTLLSVVNDVLD 324

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
            + ++AG ++L+ +      + +     +A +     + ++V +   L     D  RL Q
Sbjct: 325 FSRLEAGGLELDPAPFDPAAMASSCAGLVAERAEAKGLAVEVRAPRGLKPMNLDGPRLSQ 384

Query: 690 IFSKILSNAMDFSSKGS-TVILKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNA 746
           +    LSNA+ F+S G+ TV L+   D    +    V + G  I  +  +++F+RF    
Sbjct: 385 VLLNFLSNAVKFTSHGAITVALRQTIDGDQAVLRGEVTDTGIGIAPEHRENIFDRFSQAD 444

Query: 747 H--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR-------IPSKE 792
                +  G GLGL+I    I    G + + S +   +T           +P++E
Sbjct: 445 AAVSRRFGGTGLGLAISRRIIERMDGRIGVDSVEGQGSTFWFEVRGPLADLPTQE 499


>gi|186683317|ref|YP_001866513.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465769|gb|ACC81570.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 701

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 167/427 (39%), Gaps = 47/427 (11%)

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPA 462
             S  +   +   +N     + +       +     ++ ++   + +  P+G +   N  
Sbjct: 111 ARSQAQMNAVAALQNYERLRESQDSLRQSEERYRLLVEGVTNYAIFMLDPNGNVTTWNIG 170

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              +   +E  +  G     +      +  E+    L   ++     E  S +    +  
Sbjct: 171 AERILGYQEAEI-IGQPFERV------FSPEAIKQGLPKQVLRKAVAEGFSRENRWHIRK 223

Query: 523 DSVLEYS---IIPLPNAQTM-----LTFVNVTDSVRAERALTE--------------KNE 560
           D    ++   I PL +             ++T+  +AE    +                 
Sbjct: 224 DGTFFWAHCLITPLLDDDGNLRGFSKIMQDITERKQAEEEKEQLLLREQAARAVSEAAQS 283

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A   A+  K+ F+  VS+ELR+P+T IIG+  +L+T  L    +K +  +E I  ++ + 
Sbjct: 284 AAEAANRSKDEFLAIVSHELRTPMTAIIGWAGMLQTGVLD--EAKATLALEIIERNANLQ 341

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + L+ D+LD++ +  G + L+   + L +++    + + +  +  +I+++ I D  +   
Sbjct: 342 MQLIEDLLDISRIVRGELSLSIDLVDLVEVITAAIEVVQSLANAKDIQLETILDTSIEKI 401

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------------NGDFIFSVKNNGS 728
             D  RL Q+   +L+NA+ F+  G  V ++ +++                   V + G 
Sbjct: 402 WGDSDRLQQVVLNLLTNAIKFTPNGGRVEVRLSKEMGSREEFSQPAIPNYLQIEVTDTGK 461

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTIN 785
            I  D    VF RF      H    +G+GLGL+I    + LHGG +   S       T  
Sbjct: 462 GISPDFLPHVFERFWQADSTHTRSNKGLGLGLAIALHLVELHGGTIDAQSQGIGQGATFT 521

Query: 786 CRIPSKE 792
            ++P  E
Sbjct: 522 VKLPILE 528



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 22/157 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAI---AIF--DQNRYLQFHNRSFVELWEIDLAFLATNP 350
            +     D L  + E    L   +   AIF  D N  +   N     +     A +   P
Sbjct: 127 ERLRESQDSLRQSEERYRLLVEGVTNYAIFMLDPNGNVTTWNIGAERILGYQEAEIIGQP 186

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTL--HVIVTSN 407
                          PE +     K+ +        + ++ WH   +G     H ++T  
Sbjct: 187 FERVF---------SPEAIKQGLPKQVLRKAVAEGFSRENRWHIRKDGTFFWAHCLITPL 237

Query: 408 PRG-----GTIWMFENLTVQVDLETKYNTLVKVQGET 439
                   G   + +++T +   E +   L+  +   
Sbjct: 238 LDDDGNLRGFSKIMQDITERKQAEEEKEQLLLREQAA 274


>gi|227537039|ref|ZP_03967088.1| possible two-component hybrid sensor and regulator
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243131|gb|EEI93146.1| possible two-component hybrid sensor and regulator
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 720

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/248 (31%), Positives = 133/248 (53%), Gaps = 9/248 (3%)

Query: 551 AERALTEK--NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER L  +   E L  + + K+ F+ ++S+ELR+PL +I+  + L+  +   +LN  Q +
Sbjct: 28  AERNLEIQEKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMSENTEENLNEDQIE 87

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             + I +S T LL+L+++ILDL+ ++AG M+L Y  + L+D+  E+    A  + E ++ 
Sbjct: 88  SAKVIQSSGTSLLSLIDEILDLSKIEAGKMELEYQHVRLSDVTQELNSLFAPIVKEKSLD 147

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVK 724
           + ++    L  +   DR RL Q+   +LSNA+ F+SKGS + L    +     + +F+VK
Sbjct: 148 LNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIKFTSKGS-ITLTITEEQSNRNNIVFAVK 206

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I E+  K +F  F       +R   G GLGLSI      L GG + + S +   +
Sbjct: 207 DTGIGIAEEKQKIIFEAFQQADGSTRRKFGGTGLGLSISREIARLLGGEIRLQSKENEGS 266

Query: 783 TINCRIPS 790
             +  IP 
Sbjct: 267 IFSLIIPK 274


>gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
 gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
          Length = 918

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q+ YVE I++
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDRGQAAYVETIAS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D 
Sbjct: 452 SGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDR 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSI 730
           G       D  RL Q+   +LSNA+ F+++G   V ++   D G     ++SV ++G  I
Sbjct: 512 GVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +
Sbjct: 572 SAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDL 631

Query: 789 PS 790
           P 
Sbjct: 632 PL 633


>gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 815

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 129/300 (43%), Gaps = 11/300 (3%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           +  G D    +I  F+D    +Q   E L     E         +T        +  +  
Sbjct: 228 QKQGNDELGTLIEGFNDMLVQIQQRDEKLEAHRQELEA--EVQRRTAELSAANCELNQTV 285

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L    EA   A   K+ F+ ++S+E+R+P+  ++G   +L  S L     +Q ++ E 
Sbjct: 286 AELRVSKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLESGLAG---EQRRFAEA 342

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL+++NDILD + ++AG M+L  +   L DLL  V +  A       + + + 
Sbjct: 343 VRNSGESLLSIINDILDFSKIEAGRMELEPAPFDLQDLLGGVLEMFAAGAQRKGVTVSLQ 402

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSS 729
            D  L  +V  D  RL QI   +L NA+ F+S+GS V LKAA     G   F V + G  
Sbjct: 403 LDPALPRYVEGDPVRLRQILVNLLGNAVKFTSRGS-VQLKAAALAGEGWLRFEVADTGIG 461

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +    +F  F    +   R   G GLGL+I      L GG + + S     +     
Sbjct: 462 IRPEAQAHIFESFSQADYSTTRTYGGTGLGLAISRQLAELMGGELGLQSEYGVGSAFWFS 521


>gi|298530356|ref|ZP_07017758.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509730|gb|EFI33634.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 784

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/521 (18%), Positives = 194/521 (37%), Gaps = 56/521 (10%)

Query: 308 TYEILHNLTVAIAIFDQN----RYLQFH----NRSFVELWEIDLAFLATNPSNDELLEFL 359
            + +L ++    A+  +     +  +F     N +F ++       L    +   L E  
Sbjct: 34  YHRLLMHMPDGCALLSRQPGSGKEEEFFIQEVNPAFEDMTGAAGQELMGRSTLQALPELA 93

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
              N+   Q    T   +      S   + +      G+ +            + +F  +
Sbjct: 94  TRLNRACMQAMGGTQPVDFQHFLSSQAKYFEVRVFAVGENI-----------CMGVFSEV 142

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T ++  +       +      D   +      P G     +P+ + +             
Sbjct: 143 TGRMHFQEALRESREKYRTIADFTYDWEYWLSPQGEFLYISPSCKRVTGYTPEEFKYDPD 202

Query: 480 I--RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA- 536
           +  R I        N     D     +          +       +  + +S  P+ +  
Sbjct: 203 LFRRIIHPDDLPLLNCLKSCD---HELQQESHSETDFRIRTRDGREVWISHSCTPVFSET 259

Query: 537 ----QTMLTFVNVTDSVRAER--------------ALTEKNEALRKADEIKNSFVQHVSY 578
                   +  ++TD   AE                L       ++A + K++F+ ++S+
Sbjct: 260 GEYLGRRGSNRDITDRKVAENRLQEFAVEVETQNLELARARNRAQEASKAKSTFLANMSH 319

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  I+GF  +L+      L  +Q+ +++ I+ S   LL L+NDILD++ ++AG +
Sbjct: 320 EIRTPMNAILGFAQVLEQDP--DLTPRQAGHLKTITRSGNHLLRLINDILDMSKIEAGQV 377

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
           + +     L D+L ++    +++     ++  +  D  L  +  AD+  L QI   +L N
Sbjct: 378 QSSPEDFGLVDMLEDMGLMFSSRAEAKGLQFILERDRHLPGNIRADQGMLRQIMVNLLGN 437

Query: 698 AMDFSSKGST---VILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           A+ F+S G     V  + A+D G+           V+++G  I E   + +F  F     
Sbjct: 438 AVKFTSSGGVACRVRTEPAQDTGEKDDSRLRLTIEVEDSGPGIQEIDQQKLFEPFQQAEE 497

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  G GLGL+I  SF  L GG + +SS+ +  +     I
Sbjct: 498 GIKEGGTGLGLAISRSFARLMGGDIEVSSTKDRGSLFRVHI 538


>gi|170761578|ref|YP_001785677.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408567|gb|ACA56978.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 617

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 174/389 (44%), Gaps = 25/389 (6%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSL---------W 467
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L          
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQ 258

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               N        + I       Y           +I   +++RK +   +E +S  ++ 
Sbjct: 259 NLNINSFILKEEQKKIRNKLELVYRNKRDIVCVEQVIQ--NNKRKKIN--VESISTYIIY 314

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +   + +    +T     + ++   E+ +   NE+ R+ +++   F+  +S+EL++PL 
Sbjct: 315 NNKPAILSILRDITSQKQVEKLQKDVEKNIELLNES-REYNKLITDFLAKISHELKTPLN 373

Query: 586 NIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I     +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN   
Sbjct: 374 VIFTAVQILDLYKEDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVN 433

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + +L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  
Sbjct: 434 CNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGS 493

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  + +       + I SVK+ G  IPE+  +++F+RFV      R  + G G+GL +V+
Sbjct: 494 GGNIYVTVKDFEDNIIISVKDTGIGIPENKIENIFDRFVQVDKTLRRNKEGSGIGLYLVK 553

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SF+N+H G + I S     +     IP K
Sbjct: 554 SFVNMHEGTIDIQSEIGKGSEFIINIPVK 582


>gi|149279499|ref|ZP_01885629.1| PAS [Pedobacter sp. BAL39]
 gi|149229792|gb|EDM35181.1| PAS [Pedobacter sp. BAL39]
          Length = 814

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 17/374 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q+ +E +    +K   +     ++ + V    G +K  NP+F+ L   +   +   +   
Sbjct: 158 QLIVERRQKEELKNFEKIFRLSNDLICVSDHQGLLKRVNPSFKMLLGIDPESMLGQSLFE 217

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +         +          I +F    +   G         +++++ P P+   +  
Sbjct: 218 LVHPEDLEETYQRMEHLGSGEAIVNFIHRVRHTSGAYID-----IQWTVTPDPSTGDLFA 272

Query: 542 F-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T+    ER L +      +A   K+ F+ ++S+E+R+PL  IIGF DL+  ++  
Sbjct: 273 IGRDITEKKAQERHLKQAIAMAEEASIAKSEFLANMSHEIRTPLNGIIGFADLVLKTE-- 330

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+  Q QY+  ++ S+  LL ++NDILD + ++AG M+L+     L++L  +    I  
Sbjct: 331 -LSEVQLQYLTVVNESANSLLAIINDILDFSKIEAGRMELHLEASDLHELSCQAADIITF 389

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAAR 714
           ++ +  I + +     L      D  RL Q+   +LSNA  F+  G       V+   + 
Sbjct: 390 QIQQKGIEMLLNVPLDLPESIWTDPLRLKQVIINLLSNAAKFTDTGEIELKIEVLEYLSA 449

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHV 772
           +   F FSV++ G  I  +  + +F  F            G GLGL+I    + L    +
Sbjct: 450 EAARFRFSVRDTGIGIKLEKQREIFEAFAQEDVSTTKRYGGTGLGLTISNELLALMDSRL 509

Query: 773 SISSSDEGVTTINC 786
            + SS    +T   
Sbjct: 510 QLMSSPGVGSTFFF 523



 Score = 44.9 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 12/145 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E    ++L +  +I       I + D    L+  N SF  L  ID   +        L E
Sbjct: 162 ERRQKEELKNFEKIFRLSNDLICVSDHQGLLKRVNPSFKMLLGIDPESMLGQ----SLFE 217

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV--IVTSNPRGGTIWM 415
            +      PE L     +       ++           +G  + +   VT +P  G ++ 
Sbjct: 218 LVH-----PEDLEETYQRMEHLGSGEAIVNFIHRVRHTSGAYIDIQWTVTPDPSTGDLFA 272

Query: 416 F-ENLTVQVDLETKYNTLVKVQGET 439
              ++T +   E      + +  E 
Sbjct: 273 IGRDITEKKAQERHLKQAIAMAEEA 297


>gi|153808637|ref|ZP_01961305.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
 gi|149128959|gb|EDM20176.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
          Length = 869

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/506 (19%), Positives = 209/506 (41%), Gaps = 27/506 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF---LATNPSNDE 354
           +  + +Q      I H++   +  +D + ++ F NRS +++  +       +        
Sbjct: 373 QNKMVEQRNEFDNIFHSIRDGVITYDTDLHIHFTNRSLLQMLHLPFDIGGRVYEGMMAGS 432

Query: 355 LLEFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +   +     +K+ +++        I       E H D +   +G+ +  I +     
Sbjct: 433 IFKVYHNGQDILHKMLKEVAKTGKSVMIPQGAFMKEVHSDKYFPVSGEIV-PIFSREEIT 491

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLS--NPAFRSLW 467
           G      N++ +   +  ++  V            E      P G +     + A  ++ 
Sbjct: 492 GMALSARNISDEEMQKRFFDMAVDESAIYPWQFDMETNCFIFPQGFLVRLGYDEAVTTIS 551

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + E +R      I+ I     +  +  +         T  +  +++++G  E        
Sbjct: 552 RKEMDRTIHPDDIKEIRVLFDKALSGEEES-------TRLNFRQRNVKGEYEWWEYRSSI 604

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            + +   +   +L         + AE+ + E  +   +AD++K++F+ ++S+E+R+PL  
Sbjct: 605 VTGLTQDSLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNA 664

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+DLL  +       + +Q++  I+ +  +LL L+NDILDL+ +++G M+  ++   
Sbjct: 665 IVGFSDLLSDTS-NFTEEEVTQFIATINKNCGLLLALINDILDLSRIESGTMEFMFAEHN 723

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  LL  V  S    M    + + +    G       D  RL Q+ + +++NA  F+  G
Sbjct: 724 LPLLLKTVHDSQRLNMPA-GVELVLRMPAGDKKYLTTDNVRLQQVVNNLINNAAKFTGSG 782

Query: 706 STVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
             +      D   G     V++ G  I E+  + +F RF    +  Q  G GLGLSI ++
Sbjct: 783 -FITFGYEEDEEPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQT 839

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +    G +S++S     T    R+P
Sbjct: 840 IVERLKGTISVTSEVGKGTRFTVRLP 865


>gi|110834488|ref|YP_693347.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
 gi|110647599|emb|CAL17075.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
          Length = 930

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 148/333 (44%), Gaps = 12/333 (3%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
             ++             I  +     R  +      +     +   +   +LQ  +  L+
Sbjct: 187 MAAMIPAMRFSRQLTQPISEMVNAVHRIRDGDLSITIQTQAKSELSELETALQQMIAALA 246

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D+  E       +  T+     +         L    +   KA  IK+ F+ ++S+E+R+
Sbjct: 247 DAQTELQKN--VDQATLDLRETLETIEIQNIELDMARKEALKASHIKSEFLANMSHEIRT 304

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  IIGFT LL  S    L+++Q +Y+  I  S+  LL ++ND+LD + ++AG + L++
Sbjct: 305 PLNGIIGFTKLLHRS---PLSARQEEYLSTIHKSAESLLAIINDVLDFSKIEAGKLSLDH 361

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           + + L+DL+ +V+  +A    E  +    +I      + + D  R+ Q+ + +LSNA+ F
Sbjct: 362 TPLNLHDLIEDVQTLLAPMAQERGLEQASIIYSDVPVALLGDPLRIRQVLTNLLSNAIKF 421

Query: 702 SSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
           +  GS V+     ++         +V + G  + ++  K++F  F         Q  G G
Sbjct: 422 TDHGSVVVRAMLEEDRGAEAIIKITVTDTGHGLSQENQKNLFRAFTQTDQSARRQEGGTG 481

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +   GG + I S +E  +T    +
Sbjct: 482 LGLAISKRLVESMGGEIGIESCEERGSTFWFTL 514


>gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2483

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 121/272 (44%), Gaps = 18/272 (6%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              Q         +   A  +L EK E L    + K+ F+ ++S+ELR+PL +++    LL
Sbjct: 1737 EEQNTRVEEKNAEVELARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLL 1796

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +K G+L+ KQ +Y   I AS   LL+L+N+ILDL+ V+AG M++    IVL +L   V
Sbjct: 1797 ADNKDGNLSGKQVEYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFV 1856

Query: 655  KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +S      + N+   V            D QRL Q+   +LSNA  F+ +G  V L   
Sbjct: 1857 DRSFRPVAEQKNLSFDVELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGG-VQLVVK 1915

Query: 714  RDNGDFIFS--------------VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
              +    F               V + G  I +D  K +F  F         +  G GLG
Sbjct: 1916 LADKGVRFEHEVLKRAKRVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLG 1975

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LSI      L GG + + S+    +T    +P
Sbjct: 1976 LSISREIAKLLGGEIHVESTLGKGSTFTLFLP 2007


>gi|302061857|ref|ZP_07253398.1| PAS [Pseudomonas syringae pv. tomato K40]
 gi|302132156|ref|ZP_07258146.1| PAS [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 1189

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 167/391 (42%), Gaps = 23/391 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E   +   +     +D     + V   DG +++ N ++   +  +  
Sbjct: 543 AWMRRQIRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQRE 602

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  +L     + + I+P
Sbjct: 603 DIIGKSATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQL----TIYHWILP 658

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  +++++D  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 659 FRDSLGEVQGIIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 718

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 719 IGMLELALKRADQGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERAN 775

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 776 LRQLVESVLRVFDGLARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMG 835

Query: 706 STVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLG 757
             V +     +           +V+++G  I  +  K +F  F    + GQ  R G GLG
Sbjct: 836 -RVKIALQAVDNPDPQLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLG 894

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L I  S   + GG++S+ S     T I+  +
Sbjct: 895 LVICRSLCMMMGGNLSLDSEPGNGTRISMNL 925



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 86/251 (34%), Gaps = 34/251 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI-- 231
           +  ++ +     + LS+     + L D     ++ RD+ G +   N SY +    +    
Sbjct: 545 MRRQIRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQREDI 604

Query: 232 ----VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                 ++ +G + +  +     + + +S         +   +      + I+   +S G
Sbjct: 605 IGKSATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQLTIYHWILPFRDSLG 664

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-----------------NR 326
           E     G  ID+S    + + L    E     + A + F                     
Sbjct: 665 EVQGIIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLEL 724

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-------PEQLNWKTWKENIF 379
            L+  ++  ++   I++A+ + N   D + + L  A          PE+ N +   E++ 
Sbjct: 725 ALKRADQGELDRSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVL 784

Query: 380 SVYKSSETHKD 390
            V+      KD
Sbjct: 785 RVFDGLARQKD 795


>gi|117926619|ref|YP_867236.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610375|gb|ABK45830.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1390

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/608 (16%), Positives = 204/608 (33%), Gaps = 80/608 (13%)

Query: 255 SSALEKNFCETVSTLE---HGNNKSYKIVRVLNSFGEAGIA----IDVSKEITVNDQLTH 307
           + +L       +  +E   H   +    V V    G    A    +  + E         
Sbjct: 349 TRSLTHPLRAMIRAVEDTAHDQGRHALPVGVGGEMGILAKAFAQMLQRTAEQNAAQADHR 408

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             ++L    V +   D    + F N +   +       L     +  +          PE
Sbjct: 409 ANQLLEATDVGVFGIDDQGLVSFINPAAERMLGYSREALLGKNIHSMVHHAYADGTPYPE 468

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP------RGGTIWMFENLT- 420
                +        Y  ++   +     +G   +V  +S P      R G +  F + T 
Sbjct: 469 HACRMSAALREQREYHVTD---EVLWKQDGSPFYVTYSSIPLWQGDQRSGAVITFWDTTE 525

Query: 421 --------------------VQVDLETKYNTLVKVQGET--IDHLSEGVAV------FGP 452
                                +  LE  +   ++    T  ++ + E +          P
Sbjct: 526 QRQDEQKLIAAQQEAELIAAEERALEALFKLTLQESATTHYLEEVLEALIHSVPWLKLKP 585

Query: 453 DGRIKLSNPAF----------RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
            G + L++ +            +L    + R +       +    ++         +   
Sbjct: 586 VGGLFLTDESAPQPQLKLVVNHNLDPELKQRCAKVPFGTCLCGLAAQSGTLQFASCMDHR 645

Query: 503 IITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTM------------LTFVNVTDSV 549
            + +F+         + ++    VL   ++ L +                          
Sbjct: 646 HVITFEGITAHGHYNVPIMDGAQVLGVMVLYLAHGHEQKERETAFLARAGHIISMGLMRR 705

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA + L+   +   +A+  K+ F+  +S+E+R+P+  II  + L       S + +Q  Y
Sbjct: 706 RAAKELSCAKQRAERANHAKSDFLATMSHEIRNPMNAIIALSHLALEQ---SHDQRQRDY 762

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +   LL ++NDILD + ++AG +++  +   L+D+L+ +    A K  E  I +
Sbjct: 763 LSKIHTAGQSLLRIINDILDFSKIEAGKLEIEQTDFQLDDVLSNLATLTAVKAQEKQIEL 822

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
                  L      D  RL QI   ++ NA+ F+ +G  V +   R        +  F+V
Sbjct: 823 IFDKAPALPHALRGDPLRLSQILLNVVGNAIKFTEQGE-VEMSITRHTQRGELLELCFTV 881

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  + E     +F  +        RR  G GLGLSI    + L  G + +SS+    
Sbjct: 882 RDTGIGMNEAQIAELFRPYQQAESSTSRRFGGSGLGLSISHQLVTLMNGTIQVSSTPGVG 941

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 942 SQFVITLP 949


>gi|289626570|ref|ZP_06459524.1| PAS [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650162|ref|ZP_06481505.1| PAS [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867641|gb|EGH02350.1| PAS protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 1189

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 170/390 (43%), Gaps = 21/390 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E       +     ++     + V   +G +++ N ++  ++  +  
Sbjct: 542 AWMRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQRE 601

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  ++     + + I+P
Sbjct: 602 DIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQM----TIYHWILP 657

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  ++++++  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 658 FRDSLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 717

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 718 IGMLELALKRADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERAN 774

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 775 LRRLVESVLRVFDGLARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMG 834

Query: 706 ST-VILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
              ++L+AA            +V+++G  I  +  + +F  F    + GQ  R G GLGL
Sbjct: 835 RIKIVLQAAESPDPQLLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGL 894

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  S   + GG++S+ S     T I+  +
Sbjct: 895 VICRSLCMMMGGNLSLDSVPGQGTRISMNL 924



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L +     + L +     ++ RD+ G +   N SY +         
Sbjct: 544 MRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLR---VFSAQR 600

Query: 234 QKAIGESRK--LFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKS---YKIVRVLN 284
           +  IG+S    +     + R  ++         T   L+     G+ +    + I+   +
Sbjct: 601 EDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRD 660

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   + + L    E     + A + F
Sbjct: 661 SLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTF 702



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 30/271 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  + DQ      ++      I + D+   L+  N S++ ++      +    + + +
Sbjct: 553 AAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGV 612

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L     A +                + +          +     L    +     G I  
Sbjct: 613 LGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTI-YHWILPFRDSLGEVQGIIGG 671

Query: 416 FENLTVQVDL-------ETKYNTLVKVQGETIDHLSEGV-----AVFG---------PDG 454
           + +++ +  L       + + +   + +   +  +S  +     AV G           G
Sbjct: 672 WIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHG 731

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDD- 509
            +  S  A    + +  + L     I +IA   S   +     ++   L  +++  FD  
Sbjct: 732 ELDRS--AIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 789

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +K L   LEL S    +  I PL   Q +
Sbjct: 790 ARQKDLDLVLELDSRINADVLIDPLRFKQIL 820


>gi|154252152|ref|YP_001412976.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156102|gb|ABS63319.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 798

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/562 (20%), Positives = 213/562 (37%), Gaps = 70/562 (12%)

Query: 288 EAGIAIDVSKEITVN---------DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           + G A D+S+E  +           +  H   ++ N    + + D+   +++ + +  ++
Sbjct: 233 DIGKARDLSEEARLRAEEANAQLQRREHHFRALVENAFDVVLVTDEQAIIRYASPAAEKI 292

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHLP 395
             + +  L    S    L+FL    K  E+L       N  S    Y+     +D   + 
Sbjct: 293 -GLSIDALIGMNS----LDFLTKEQK--EELLKDVAPGNGASRVLTYELLVPRQDDRSIW 345

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV-------- 447
              TL  ++      G +    ++T +   ET+  +    Q   +  L+ GV        
Sbjct: 346 IEATLTNLLHDENVRGYVVNLRDITERKRAETEQRS----QFGVLRALATGVELGEVMSR 401

Query: 448 --------------AVFGPDGRIKLSNPAFRSLWKTEENRL------SPGTHIRNIAATC 487
                         AVF  D +  L   A   L       +              +A   
Sbjct: 402 LALGSEEAHPGARAAVFLLDAKEDLITCAAPHLPADFPEWVGGFWQSQKDHDFGRMALAG 461

Query: 488 SRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
            +        +     I+S+             +   S  V+    +    A+T   +  
Sbjct: 462 HKIVATDLQEEHHGESISSYMRGAGISTVWFKPILSRSGKVIGAFAMYFAEARTPGKWEE 521

Query: 545 VT------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                         +  RAE  L +  E    A+  K  F+ ++S+ELR+PL  IIGF++
Sbjct: 522 DYVMGAAHLASIAIERRRAEEGLRQATETAEMANRAKTKFLANMSHELRTPLNAIIGFSE 581

Query: 593 LLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++     G L + +  +Y   I  S   LLN+++DILD++ ++AG   L    I +  +L
Sbjct: 582 IMSQEMFGPLGSDRYREYTNDIHGSGRHLLNVIDDILDISKIEAGRYVLEEDEIDMAHVL 641

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
               + +  +  E    + +     + +  AD++ + QI   +LSNA  F+     + L 
Sbjct: 642 KWSVEMMRARTLEKRQNVNLHLPEAIPNVRADQRAMRQIMLNLLSNASKFTPAEGRIDLN 701

Query: 712 AAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
            +R D GD + SV ++G  IP +    V   F  V +    Q  G GLGL I +S I +H
Sbjct: 702 VSRNDAGDLMVSVADSGIGIPRNKLDEVLEPFGQVDDTSARQHGGTGLGLPITKSLIEMH 761

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG  ++ S+    TT     P+
Sbjct: 762 GGSFTLESTLGAGTTATMIFPA 783


>gi|89900557|ref|YP_523028.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89345294|gb|ABD69497.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 1033

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 155/372 (41%), Gaps = 18/372 (4%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           ++        +  Q   +D     VA     G I   N  F ++ +   + L    H   
Sbjct: 174 LEQSRHNEAELTYQKYALDQ-HAIVAATDVRGTITYVNDLFCAISQYSRDELLGHNHRLL 232

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            +    + + E+    + +  +   D   ++  G+L  +S      +I+P  N       
Sbjct: 233 NSGAHPKEFFEAMYRTISSGEVWKGDICNRAKDGSLYWVS-----TTIVPYVNDSGKPIR 287

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                +   ER      EA + A   K+ F+ ++S+E+R+P+  ++G T ++  S    L
Sbjct: 288 YVAIRADITER--KRAKEAAQAATLAKSQFLANMSHEIRTPMNAVLGLTRMVLES---DL 342

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q + +  +S S   L+ ++NDILD + ++AG + +    + +  +L EV    + + 
Sbjct: 343 KPEQREQLIKVSKSGRALVRIINDILDFSRIEAGRLAIERIPLRVEAVLLEVADLFSAQA 402

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--- 717
            E  + + +  + +     + D  RL Q+ + ++ NA+ F+  G   + ++ A       
Sbjct: 403 EEKGLELFLDIEPETPLQVIGDPLRLTQVLNNLVGNAIKFTDHGEIHIGVRVAHYGDATL 462

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
               +V++ G  +  +    +F  F        R   G GLGL+I +  + L GG +++ 
Sbjct: 463 TLCINVRDTGIGMAPEQIGVLFQSFTQADSSTTRNYGGSGLGLTIAKKLVELMGGQITLD 522

Query: 776 SSDEGVTTINCR 787
           S+    T ++  
Sbjct: 523 SAVGQGTNVSFS 534


>gi|51244735|ref|YP_064619.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875772|emb|CAG35612.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1041

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 158/386 (40%), Gaps = 13/386 (3%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           W++          TK           +D  S  +     D  +   N      +      
Sbjct: 290 WIYLLRKQVASRTTKLQASEAWTVAILDTASNPIITIDEDETVLSFNLGAERSFAYSAEE 349

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +  G  ++ +       Y +      FA       D  + +    +  +   +  S+  +
Sbjct: 350 I-IGQKVKILLPDLYEKYEDEFATSFFAKDDAHLIDMDREIDARRKNGTIFPIHLSVGEM 408

Query: 534 PNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +   +  + + D     +    L    +A   A E K  F+ ++S+E+R+P+  I+GF
Sbjct: 409 IVSGKRMFVIILVDLSVQKQRNLELELARDAAEAAMEAKAIFLANMSHEIRTPMNAILGF 468

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             ++  S   SL +   +++     S+  LL ++ND+LD++  D+G M+L +S   L   
Sbjct: 469 LAIVLES--SSLPADLRKHIVTAHGSAESLLVIINDVLDVSKFDSGRMELVFSVFHLPRT 526

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + +  Q++     E  + I +  D  L   F+ D  RL Q+   +++NA+ F+ +GS + 
Sbjct: 527 IGKALQTLYMPAQEKELNIHLNYDEDLPYCFLGDSVRLRQVIINLVANAIKFTEEGS-IT 585

Query: 710 LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           ++    +G+    +F+V + G  I  +    +F  F        R   G GLGL+I +  
Sbjct: 586 IEVKGTSGEDDLLLFTVVDTGIGIRPEQVARIFEPFTQADDSSTRNIGGTGLGLAICKEI 645

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           ++L GG + + S     ++ N  +P 
Sbjct: 646 VDLMGGRIWVESEKGKGSSFNFMVPL 671


>gi|114569450|ref|YP_756130.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339912|gb|ABI65192.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 562

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 162/370 (43%), Gaps = 11/370 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           DL        +V+ +  D     +     DG I  ++   R L       L  G  + ++
Sbjct: 161 DLARAEAERGRVRAKAFDASPVPLVACDADGHILAASRGLRDLSPGLPRDLK-GLPLADL 219

Query: 484 AATCSRYYNESDGWDLFAA-IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                  +++ D   L A+    +  D    L           +     P+     +   
Sbjct: 220 G------FDDDDRAQLAASGRRAALRDVEGPLVVRGPRGHSEDVIVKTRPIHGGSVITLS 273

Query: 543 VNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +   +++A         EA  +    K+ F+  VS+ELR+PL  IIGF+D++K    G 
Sbjct: 274 KDSGPALQAALTQARHDREAAEEDARAKSQFLASVSHELRTPLNAIIGFSDVMKARLFGP 333

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L ++ ++Y + I  S   L+ L+ D+LD++ ++A   +L   T  + +++N   + +  +
Sbjct: 334 LPARYAEYADLIHESGQHLMELIGDVLDMSKIEADRYELVRETFDIGEVVNLSAKMMRLQ 393

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  I +K+           DR+ L QI   +LSNA+ F+ KG  +++ A    G  + 
Sbjct: 394 AEEAGINLKIKRHDGPLLVDGDRKALRQILLNLLSNAVKFTPKGGAIVVMARASGGQLVM 453

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V ++G  I  +    +   +   A+    ++RG GLGLS+V +   LHGG ++I+S   
Sbjct: 454 AVGDSGVGIDPEETARLGQPYQQAANARDIEKRGTGLGLSLVRALSELHGGSMNIASRKG 513

Query: 780 GVTTINCRIP 789
             TT+   +P
Sbjct: 514 EGTTVTISLP 523


>gi|257486235|ref|ZP_05640276.1| PAS [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1189

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 170/390 (43%), Gaps = 21/390 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E       +     ++     + V   +G +++ N ++  ++  +  
Sbjct: 542 AWMRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQRE 601

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  ++     + + I+P
Sbjct: 602 DIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQM----TIYHWILP 657

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  ++++++  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 658 FRDSLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 717

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 718 IGMLELALKRADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERAN 774

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 775 LRRLVESVLRVFDGLARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMG 834

Query: 706 ST-VILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
              ++L+AA            +V+++G  I  +  + +F  F    + GQ  R G GLGL
Sbjct: 835 RIKIVLQAAESPDPQLLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGL 894

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  S   + GG++S+ S     T I+  +
Sbjct: 895 VICRSLCMMMGGNLSLDSVPGQGTRISMNL 924



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L +     + L +     ++ RD+ G +   N SY +         
Sbjct: 544 MRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLR---VFSAQR 600

Query: 234 QKAIGESRK--LFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKS---YKIVRVLN 284
           +  IG+S    +     + R  ++         T   L+     G+ +    + I+   +
Sbjct: 601 EDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRD 660

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   + + L    E     + A + F
Sbjct: 661 SLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTF 702



 Score = 38.8 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 30/271 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  + DQ      ++      I + D+   L+  N S++ ++      +    + + +
Sbjct: 553 AAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGV 612

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L     A +                + +          +     L    +     G I  
Sbjct: 613 LGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTI-YHWILPFRDSLGEVQGIIGG 671

Query: 416 FENLTVQVDL-------ETKYNTLVKVQGETIDHLSEGV-----AVFG---------PDG 454
           + +++ +  L       + + +   + +   +  +S  +     AV G           G
Sbjct: 672 WIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHG 731

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDD- 509
            +  S  A    + +  + L     I +IA   S   +     ++   L  +++  FD  
Sbjct: 732 ELDRS--AIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 789

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +K L   LEL S    +  I PL   Q +
Sbjct: 790 ARQKDLDLVLELDSRINADVLIDPLRFKQIL 820


>gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 908

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 156/357 (43%), Gaps = 28/357 (7%)

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNI------AATCSRYYNESDGWDLFAAIITSFDD 509
           I   N A R + K           +R +      +A   R   E +  +     I   D 
Sbjct: 124 ILAFNVAQRMMAKKNPPSQQEINELRELRNAYSLSAVSYRDAAEKEFQETIHKAIRRSDR 183

Query: 510 ERKSLQG------------TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            + S               TL +    V+   ++   N   +L    +   ++  ++  E
Sbjct: 184 AQGSGAIIGSVMLFVIAILTLLVNRGIVVLERVVENRNKMLLLVNSELEQEIQKLKSAEE 243

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                  A  IK+ F+ ++S+ELR+P+  +IG + L   ++   L+ KQ  Y++ I +S+
Sbjct: 244 ARSHAEAASHIKDEFLANMSHELRTPMNAVIGLSHLCLQTE---LSDKQQDYLQKIHSSA 300

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL ++NDILD++ ++AG M+L+     L+++L  +   +  K HE N+ + + +   +
Sbjct: 301 KSLLGILNDILDVSKIEAGKMELDRIAFELDEVLGNLSTILWAKSHEKNLELLLETAPDV 360

Query: 678 GSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPE 732
            S  V D  RL Q+   +  NA+ F++KG  V+ +   ++ GD     F+VK+ G  + +
Sbjct: 361 PSVLVGDPLRLGQVLINLAGNAVKFTAKGEVVVSIDLEKEEGDQVVLRFAVKDTGIGMSQ 420

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                +F  F        R   G GLGL+I +  I + GG + + S+    +     
Sbjct: 421 SEIDKLFRPFTQADTSITRKFGGTGLGLTISKRLIEMMGGKIWVESTPGSGSKFIFT 477


>gi|237723230|ref|ZP_04553711.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372791|ref|ZP_06619172.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|229447752|gb|EEO53543.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632300|gb|EFF50897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 660

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/512 (20%), Positives = 225/512 (43%), Gaps = 43/512 (8%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--AFLATNP-SNDELLEFLRSANK 364
            + I ++L+V + ++D++  +   N S +    I      L  N  +     + ++   +
Sbjct: 14  LHNIFNDLSVGLELYDKDGLMIDVNYSRLRSMGIKDKKDILGYNLFNYTSFSDEIKEQIR 73

Query: 365 LPEQLNW----------KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
             E + +          + +  N+  +     T     +  +  T ++++T +     +W
Sbjct: 74  KGETVRFMAKYDFDDLCRLFPTNLSGIKFFEITVSFVHNDKSEITNYMVITQDITERVLW 133

Query: 415 M--FENLTVQV--------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
              ++NL  +V        + E +   L++     +++++ G+A    D  ++  N +  
Sbjct: 134 QNKYDNLYEEVVRSKKELLESEQRMIHLIRQNELVLNNINSGLAYIANDYIVQWENISLC 193

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           S   + E                +   N        +  + S             L +  
Sbjct: 194 SKSLSYEAYKKGEPCYLTAHNRTTPCENCVMQRARKSGQVESIL---------FNLDNKH 244

Query: 525 VLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           V+E    P+ N Q      ++   +VT+       L +      ++D++K++F+ ++S+E
Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 304

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL    +     ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 305 IRTPLNAIVGFSDLLM---VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 362 LKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYEACTVRLDKNRLAQILTNFVTNAI 421

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG T+ +   + + +    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 422 KYTSKG-TIEMGYEKIDENIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I ++ +    G +   S  +  +     +P +
Sbjct: 479 ICKAIVEACRGEIGFESEFDKGSLFWAVLPCQ 510


>gi|331016191|gb|EGH96247.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 1189

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 167/391 (42%), Gaps = 23/391 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E   +   +     +D     + V   DG +++ N ++   +  +  
Sbjct: 543 AWMRRQIRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQRE 602

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  +L     + + I+P
Sbjct: 603 DIIGKSATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQL----TIYHWILP 658

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  +++++D  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 659 FRDSLGEVQGIIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 718

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 719 IGMLELALKRADQGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERAN 775

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 776 LRQLVESVLRVFDGLARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMG 835

Query: 706 STVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLG 757
             V +     +           +V+++G  I  +  K +F  F    + GQ  R G GLG
Sbjct: 836 -RVKIALQAVDNPDPQLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLG 894

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L I  S   + GG++S+ S     T I+  +
Sbjct: 895 LVICRSLCMMMGGNLSLDSEPGNGTRISMNL 925



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 86/251 (34%), Gaps = 34/251 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI-- 231
           +  ++ +     + LS+     + L D     ++ RD+ G +   N SY +    +    
Sbjct: 545 MRRQIRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQREDI 604

Query: 232 ----VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                 ++ +G + +  +     + + +S         +   +      + I+   +S G
Sbjct: 605 IGKSATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQLTIYHWILPFRDSLG 664

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-----------------NR 326
           E     G  ID+S    + + L    E     + A + F                     
Sbjct: 665 EVQGIIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLEL 724

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL-------PEQLNWKTWKENIF 379
            L+  ++  ++   I++A+ + N   D + + L  A          PE+ N +   E++ 
Sbjct: 725 ALKRADQGELDRSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVL 784

Query: 380 SVYKSSETHKD 390
            V+      KD
Sbjct: 785 RVFDGLARQKD 795


>gi|253567011|ref|ZP_04844462.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944135|gb|EES84644.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1039

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 215/511 (42%), Gaps = 40/511 (7%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-ELLEFLRS 361
           + + +   ++ N+     +      L  + +   +    DL +L  NP  +         
Sbjct: 402 EAMANYKNLIDNMP----LLYMQEKLIVNEQGVAD----DLIYLNVNPHFEKHFFRREDV 453

Query: 362 ANKLPEQLNWKTWKENIFSV---YKSSETHKDTWHLPNG-QTLHVIVTSNPRGGTIWMFE 417
             K   +L  ++  E +  +    K +      ++     +   +++    +   I +F 
Sbjct: 454 VGKRASELFPESLPEFLHFIQISLKENRAITFPYYFKKIDRFYDIVLKGAHQENVIDIFC 513

Query: 418 -NLTVQVDLETKYNTLVKVQGETIDHLSEGV----------AVFGPDGRIKLSNPAFRSL 466
            + T     + K N         ++ +++ +           +   +  I+LS    +  
Sbjct: 514 VDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIELS---AQGN 569

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             +EE    P +   +      R   E    DL    +    +E + +           +
Sbjct: 570 NVSEEQLAVPDSQYFSKIYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINIRNHTHKIEWV 629

Query: 527 EYSIIPLPNAQT------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           E         +       + +   +T   + E  LT   +   +++ +K++F+ ++S+E+
Sbjct: 630 EAQAAVETRDENGIPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKSAFLANMSHEI 689

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+ +L +++       + +YV  I  ++ +LL L++DILDL+ ++AG ++ 
Sbjct: 690 RTPLNAIVGFSGILASTEEEEE---KQEYVSIIENNNALLLQLISDILDLSKIEAGTLEF 746

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            YS I LN  L +++ ++  K+  ++++++ +    +     ++ RL Q+   +++NA+ 
Sbjct: 747 QYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQLIINLVTNAIK 806

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           F+S+GS +         +  F V + G  IP+D  +S+F RFV      Q  G GLGLSI
Sbjct: 807 FTSRGS-IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNSFAQ--GTGLGLSI 863

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + +   GGH+ + S     +T    +P K
Sbjct: 864 CRTLVEHMGGHIGVDSEQGKGSTFWFSLPYK 894


>gi|295317795|gb|ADF98172.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 617

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 176/389 (45%), Gaps = 25/389 (6%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L     N    
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESAAELLICNNNGKLE 258

Query: 477 GTHIRN---------IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +I N         I       Y           +I   +++RK +   +E +S  ++ 
Sbjct: 259 NLNINNFILKEEQKKIRNKLELVYRNKSDIVCVEQVIQ--NNKRKKIN--VESISTYIIY 314

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +   + +    +T     + ++   E+ +   NE+ R+ +++   F+ ++S EL++PL 
Sbjct: 315 NNRPAILSILRDITSQKQVEKLQKDVEKNIELLNES-REYNKLITDFLANISQELKTPLN 373

Query: 586 NIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I     +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN   
Sbjct: 374 VIFTAVQILDLYKKDAKSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVN 433

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             + +L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  
Sbjct: 434 CNIVNLVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGS 493

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  + +       + I SVK+ G  IPED  +++F+RFV      R  + G G+GL +V+
Sbjct: 494 GGNIYVTVKDFEDNIIISVKDTGIGIPEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVK 553

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SF+N+H G + I S     +     IP K
Sbjct: 554 SFVNMHEGTIDIQSEIGKGSEFIINIPVK 582


>gi|266622770|ref|ZP_06115705.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288865493|gb|EFC97791.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 1052

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 109/683 (15%), Positives = 252/683 (36%), Gaps = 71/683 (10%)

Query: 155 IEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           I+G          +  +     E   T    +K++    +      ++       D+   
Sbjct: 118 IDGYPVAYTTMTDVTEMVLARQEQEYTQQVVEKVTQEQEMLMGAL-NVSVSKHLIDEHFT 176

Query: 215 ILWANISYKKNTETEGIVFQKAIG-------ESRKLFKEEIKKRMISSSALEKNFCETVS 267
            +WAN  Y K        ++            +     E +  ++ S     ++  E + 
Sbjct: 177 CVWANEHYYKLIGYPKAEYEALFHNHADEYYRNNPEGWEMLANKVQSVLERGEDQYELII 236

Query: 268 TLE--HGNNKSYKIVRVLNSFGEAGIAI------DVSKEITVNDQLTHTYEILHNLTVAI 319
            ++   G     K+          GI        DV++ + + D+     + +  ++V+ 
Sbjct: 237 PMKYKDGTGYWVKVFSYFTDEYINGIRTSYTVMTDVTELVHMKDEQEMLMKTMK-VSVSR 295

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
            + D++  + + N  + EL             ++   E+ ++      Q +W      I 
Sbjct: 296 HLVDKHFTVLWANHFYYELIGYSKQEYEAL-FHNHCDEYFQNN-----QDSWNAIHRKIN 349

Query: 380 SVYKSSETHKDTWH---LPNGQTLHV-------IVTSNPRGGTIWMFENLTVQVDLETKY 429
            +Y++ +   + +    +P+G T  V           + +        ++T  + ++ + 
Sbjct: 350 QMYENGKKSYEVFLPLKIPDGSTCWVKMVGFFTDARQDGKQLAYTTMVDVTDMIQIQQE- 408

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                 +    D++  G  V     + ++       +  ++         +  ++A    
Sbjct: 409 ------KTIAYDNIP-GFIV-----KYRVLPERLEMIEASDRITDIFDVDLSRLSALDCY 456

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTL----ELLSDSVLEYSIIPLP----NAQTMLT 541
              + +   +  A   SF   R+  +G++    +   D   +     +     +   +  
Sbjct: 457 SILQPESRAVLEANHPSFL-RREPFEGSICVKDKYGRDRWFQIHCACIDFVADDPVYLTV 515

Query: 542 FVNVTDSVRAER----------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           F+++TD                 L    E  ++A+E K+ F+  +S+++R+P+  I G T
Sbjct: 516 FIDITDITELRELQSKLEERTVMLNTALEEAKQANEAKSDFLSRMSHDIRTPMNVIAGMT 575

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++  +        +    ++ I  SS  LL L+ND+LD++ ++ G   +N   + L  +L
Sbjct: 576 EIAGSHVYEP--ERVKDCLQKIRLSSHHLLGLINDVLDMSRIENGNFHINMVPVSLPAVL 633

Query: 652 NEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            EV       + E      V   + +   F +D  RL QI   +LSNA  F+     ++ 
Sbjct: 634 REVIMITLAGIREKAQIFDVHLVNLEDEQFYSDALRLRQILLNLLSNACKFTPVSGRIVF 693

Query: 711 KAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINL 767
           +  + D    IF+V + G+ +  +  + +F  F    ++   Q  G GLG+ I +  +++
Sbjct: 694 EVEQKDRTALIFTVSDTGAGMSPEFLEHIFEAFTREQDSRTDQIEGSGLGMCITKRLVDM 753

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
             G +++SS     TT    +P+
Sbjct: 754 MEGTITVSSCPGKGTTFQVTLPA 776


>gi|53713918|ref|YP_099910.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216783|dbj|BAD49376.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1022

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/641 (16%), Positives = 257/641 (40%), Gaps = 62/641 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKNTETEGIVFQKAIGE 239
                +L     + + + +S+   +  +D       ++ N    +   T       ++  
Sbjct: 253 RKNNTELQRRKLLQENILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSV-- 310

Query: 240 SRKLFKEEIKKRMISSS----ALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAI 293
                  E  +RM  +        K +      +   + +SY   + + +   G   + +
Sbjct: 311 ----LDSEQAERMQKTDLEVFTTGKPYFGVERIILK-DGRSYDTIVRKNIIYDGTKRLLL 365

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIA-----IFDQNRYLQFHNRSF-------VELWEI 341
           ++  +  + + L    ++L ++++ +       ++ ++        F       +++   
Sbjct: 366 NIRWDQKLQNDLKRRAKVL-SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDINSF 424

Query: 342 DLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +      +P + +  ++ + +  K     +   W     +  + +  ++  W    G   
Sbjct: 425 EKFAECVHPDDRQRFVDTMDAVLK----QDSGEWDIEYRADLRGNGNYE--WWKTRGVLE 478

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE-------TKYNTLVKVQGETIDHLSEGVAVFGPD 453
             I+  +P      M  ++      E        K N L++     +++ + G+A    D
Sbjct: 479 TSILNDHPYQYVSGMSISIESYKQTELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTD 538

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             ++  N +  S   + E         +    +     +  D   L   +++   ++ K 
Sbjct: 539 YVVQWENVSVCSSSLSFEAYKRGECCYK----SAHNRTSPCDNCVLSKVLVSRQMEKIK- 593

Query: 514 LQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                 L ++ ++E    P+ N        ++   ++TD  R    L +      ++D++
Sbjct: 594 ----FHLENNRIVEVLATPVFNESEEIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKL 649

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+DLL  S+      +   Y++ I+ ++ +LL L+NDIL
Sbjct: 650 KSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEE---YMQIINTNNELLLKLINDIL 706

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ +++G ++L Y    L +  + +  S+  ++    +++  ++   +     D+ R+ 
Sbjct: 707 DLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVA 766

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ +  ++NA+ ++ +G T+ +     +      V++ G  IPE+  + VF+RF      
Sbjct: 767 QVVTNYVTNAIKYTPQG-TIEMGYEVVDAGIRLYVRDTGIGIPEEKKRKVFHRFEKLDEF 825

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G GLGLSI ++     GG V   S     +     +P
Sbjct: 826 AQ--GTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864



 Score = 37.6 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 55/164 (33%), Gaps = 16/164 (9%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFLATNPSND-----ELLE 357
                 I  NL V + ++D + YL   N   +++  +      L  N   +     E+  
Sbjct: 12  HRLQQTIYENLPVGMELYDGDGYLIEINSVGLKMMGVKDKQDMLGINIFENPNIPVEMKR 71

Query: 358 FLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWM 415
            LR+   +   + +     +  +    S  ++ +        T+ V++  N      +++
Sbjct: 72  RLRAGENIRFTVKYDFDLAKAHYPTVLSGISYFEI-------TVSVVLDENKEIDKFLFI 124

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +++T  V  +       +     +      +  F    R+  +
Sbjct: 125 AQDVTEAVHTQEILRQSKQKTALAMQAAEVMLWEFDVRTRLFYA 168


>gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 918

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q+ YVE I++
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDRGQAAYVETIAS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D 
Sbjct: 452 SGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDR 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSI 730
           G       D  RL Q+   +LSNA+ F+++G   V ++   D G     ++SV ++G  I
Sbjct: 512 GVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +
Sbjct: 572 SAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDL 631

Query: 789 PS 790
           P 
Sbjct: 632 PL 633


>gi|148548955|ref|YP_001269057.1| histidine kinase [Pseudomonas putida F1]
 gi|148513013|gb|ABQ79873.1| histidine kinase [Pseudomonas putida F1]
          Length = 935

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 113/603 (18%), Positives = 215/603 (35%), Gaps = 75/603 (12%)

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           ++L+ + + +           +A   S  L  E+++   + ++A  + +           
Sbjct: 132 NLLYVDTAAQAPMRWLYNDDAQASLPSPALL-EQLRAAELRATAPRELWLADQGAQGSRL 190

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA-IAIFDQNRYLQFHN 332
               ++       G  G+ ID                 L + +     +F+ +  L F N
Sbjct: 191 FIFLRLDARDPDSGWLGLEIDSHAVSPS----------LEDASAGKFMMFNADGMLVFTN 240

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL---------NWKTWKENIFSVYK 383
                L          +P  +    F      LPE L         +W+       S   
Sbjct: 241 TPGPAL-----DRSLHHPVGNNFFGFA-GQGLLPEYLVISKPLMSSDWQLVYAIDLSAIL 294

Query: 384 SSETHKDT----WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +    +      + + +   + V++    +       E +   V+ E           + 
Sbjct: 295 AGLWQQLLGALLFCVLSITLIRVLIQRFDQRLFTPTVERIRALVESEM-------FSRDV 347

Query: 440 IDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           I+     + V    DG++ L N   +                           + + G  
Sbjct: 348 IETAPVALCVLRRSDGQVVLENHLAQQWLGQ----------------------DPARGAR 385

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERAL 555
               I  +F+          E      L  S  P         +  F +++   + E AL
Sbjct: 386 SAQWIEQAFERHEGQCSDYFESAEGRHLYLSCSPTRYKGEPVLLCAFSDISARKQIEAAL 445

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +   A   A+E K  F+  +S+E+R+PL  ++G  +LL  +    L+++Q  Y+  I  
Sbjct: 446 EDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTV---LDAQQRDYLRAIEG 502

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS+ LL L+ D+LD++ ++AG + L  S     DL+ EV Q  +       +++    D 
Sbjct: 503 SSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKGLQLYSCLDP 562

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGD--FIFSVKNNGSS 729
           +L    + D  R+ QI + +LSNA+ F+  G  V+L+A    RD      ++ V + G  
Sbjct: 563 RLPEHLIGDVNRIRQILNNLLSNAVKFTDCG-RVVLRARLLNRDGERSCLLWQVSDTGKG 621

Query: 730 IPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           I E     +F  F     H     G GLGL I +    L  G + + S     ++ +  +
Sbjct: 622 IAEQDQPFIFEPFYQTEGHSQVIPGTGLGLPICQRLTQLMNGQLRLVSELGLGSSFSLTL 681

Query: 789 PSK 791
           P +
Sbjct: 682 PLE 684


>gi|74317005|ref|YP_314745.1| multi-sensor hybrid histidine kinase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056500|gb|AAZ96940.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 846

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 154/380 (40%), Gaps = 16/380 (4%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +    +  T  +      +  S+ V +    G     NPA  S++  +       T I  
Sbjct: 216 LTQTRQLETERQKYRTLFETNSDAVVILDDHG-FTDCNPATLSMFGIDSVADFVNTPIPR 274

Query: 483 IAATC-SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +     +   + SD      A   S        QG     +    E ++  +      + 
Sbjct: 275 LGTPMQANGVSASDHARQTIATARSTGHAVMDWQGRRADGTTFFAEIALHAMQLEGRPVI 334

Query: 542 FVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
              + D      AE A     EA  +    K+ FV +VS+E+R+P+  I+G + LL  + 
Sbjct: 335 QAIMRDVSERRAAEAAKEAAREAALQMARAKSEFVANVSHEIRTPMHGILGMSSLLLKT- 393

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q +YV  + +S+  LL ++NDILD + ++AG + +         L+  V    
Sbjct: 394 --PLDGRQREYVSTLKSSAESLLKIINDILDFSKIEAGKLAIEAVAFSPVALMQGVVALF 451

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  E N+++ + + +    + + D  R+ QI   ++ NA+ F+ +    +  +    G
Sbjct: 452 QARALEKNLQLTLALHESPPPALLGDPTRIRQILLNLVDNAIKFTDRDHVELSGSFETLG 511

Query: 718 D---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           D     FSV ++G  +  +    +F  F        RR  G GLGL+I      L GG +
Sbjct: 512 DEVACRFSVTDSGIGMSAETQAGLFQAFSQADSSTTRRYGGTGLGLAISSQLAALMGGEL 571

Query: 773 SISSSDEGVTTIN--CRIPS 790
           ++ S+    +      R+P+
Sbjct: 572 TVESAPGRGSRFTLSVRLPT 591


>gi|255525673|ref|ZP_05392606.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|255510659|gb|EET86966.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
          Length = 561

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 162/395 (41%), Gaps = 38/395 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRI 456
            V ++S    G + + F N+  +++     N ++  Q      +  +  GV     + +I
Sbjct: 197 RVKISSKDEIGQLGITFNNMADKLNST--LNDVLDKQNKLEAILKSMDSGVIAVDVNYKI 254

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + NP  + ++    + +  G ++ +            +  + +  I   +  ER     
Sbjct: 255 IMINPYAKKIFGINGDII--GENLMDNIRDFEFEDVFKNTDEDYVEIKILWPKER----- 307

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            L + +  ++           T+    ++TD  R E               ++  FV +V
Sbjct: 308 NLRIRTADIINVR----EKIGTVAVVQDITDIKRLE--------------NMRTQFVANV 349

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PLT+I GF + L+         K   ++  I+  +  L  L+ND L L+ +++ 
Sbjct: 350 SHELKTPLTSIKGFAETLRYVDDFKNKEK---FLNIINDEADRLTRLINDTLTLSHIES- 405

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++     I +N ++ +V   +     + NI++  I D K+ +   D  R  Q+   ++ 
Sbjct: 406 SIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGD-KVPNLKGDNDRFKQMLINLVD 464

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           NA+ +S     V +    +N + I  V++ G  I ++    +F RF          + G 
Sbjct: 465 NAIKYSDNNGIVKIGTKLENDNCIIWVEDKGVGISKEHIDRIFERFYRVDKARSRAQGGT 524

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+IV+  +    G++ + S     +     IP
Sbjct: 525 GLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 559


>gi|298290623|ref|YP_003692562.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
 gi|296927134|gb|ADH87943.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
          Length = 874

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/498 (21%), Positives = 207/498 (41%), Gaps = 38/498 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQL 369
           +L  L +A+  F  +  L + NR+ +E     DLA L        L    R+        
Sbjct: 391 VLDRLPLAMLAFRGDH-LLYANRALLEWTGHADLAALEAAGGLATLFGAQRAGGD----- 444

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIWMF-----ENLTVQV 423
                        + S          +G T+   + S P  GGT  ++     + +T + 
Sbjct: 445 -------------EESRALTLLTATGHGITVEARLMSAPWEGGTAMLYVLHRLDAVTDER 491

Query: 424 --DLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
               E          +     +D  ++GV +    G I   N    +L+      +  G 
Sbjct: 492 IRQAELALRQAENAERELRAILDTATDGVVLIDKAGTILSMNHPAEALFGFNAGDVQ-GE 550

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            I  + A  S          L +  + S  ++ + + G +       L  ++  + +  T
Sbjct: 551 AITLLLAPESHRAAIDYLDGLASNGVASVLNDGREVIGRVREGGLIPLFMTMGRIGDDPT 610

Query: 539 MLTF--VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  ++T   +AE  LTE      +A+  K+ F+  +S+E+R+PL  IIGF++++  
Sbjct: 611 KFCAVLRDITQWKKAEEELTEAKHLAERANLAKSDFLAKISHEIRTPLNAIIGFSEVMME 670

Query: 597 SKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            + G++ N +   Y+  I +S   L++L+ND+LDL+ ++AG + L ++++ LN+++ +  
Sbjct: 671 ERFGAIENQRYRDYLRDIHSSGEHLISLINDLLDLSKIEAGKLDLAFTSVALNEIVQQCM 730

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-R 714
             +  + +   I ++      L   VAD + + QI   ++SN++ F+  G  VIL     
Sbjct: 731 AIMQPQANRERIVVRSSLATDLPPVVADARSIRQIVLNLVSNSVKFTQPGGQVILSTTLT 790

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHV 772
           + G+ +  V++ G  + E         F   A  G+    G GLGL + ++    +    
Sbjct: 791 EQGEVVLRVRDTGIGMSEADIAIAMEPFRQIATSGRAGSGGTGLGLPLTKALAEANRASF 850

Query: 773 SISSSDEGVTTINCRIPS 790
           +I S+ +  T +    PS
Sbjct: 851 NIRSAVDVGTIVEITFPS 868



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 20/163 (12%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           + + D L   +        +L+AN +  + T    +   +A G    LF  +      + 
Sbjct: 389 RPVLDRLPLAMLAFRGDH-LLYANRALLEWTGHADLAALEAAGGLATLFGAQ-----RAG 442

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-----DVSKEITVNDQL----- 305
              E      ++   HG     +++      G A + +      V+ E     +L     
Sbjct: 443 GDEESRALTLLTATGHGITVEARLMSAPWEGGTAMLYVLHRLDAVTDERIRQAELALRQA 502

Query: 306 ----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
                    IL   T  + + D+   +   N     L+  +  
Sbjct: 503 ENAERELRAILDTATDGVVLIDKAGTILSMNHPAEALFGFNAG 545


>gi|254483091|ref|ZP_05096325.1| Two component regulator three Y motif family [marine gamma
            proteobacterium HTCC2148]
 gi|214036613|gb|EEB77286.1| Two component regulator three Y motif family [marine gamma
            proteobacterium HTCC2148]
          Length = 1484

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 12/246 (4%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R L +  ++   A++ K+ F+  +S+E+R+P+  +IG T+LL  +    L+ +Q Q+   
Sbjct: 837  RELQDAQKSAESANQAKSDFLATMSHEIRTPMHGMIGMTELLLHT---DLSEQQKQFARA 893

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S   LL+L+N+ILD + ++A  ++L      L +L++E+            + +  I
Sbjct: 894  AHNSGESLLSLINEILDFSKIEASKVELENIEFDLVELIDEICYLQGEPAARKGLALNSI 953

Query: 673  SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-----RDNGDFIFSVKN 725
             D     + + D  ++ Q+   ++SNA+ F+  G+  V +        R+  D   SVK+
Sbjct: 954  FDQTPPKTLLGDPTKVRQVVMNLVSNAIKFTHTGNIDVCVTYKNSEDDRNKNDVTISVKD 1013

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  +       VF  F        R   G GLGLSI + +I L  G ++I S     T 
Sbjct: 1014 TGIGMDAATQNRVFEVFTQADTSTTREYGGTGLGLSISKHYIELMNGTIAIESQPNIGTD 1073

Query: 784  INCRIP 789
            ++  +P
Sbjct: 1074 LSVTVP 1079


>gi|91772717|ref|YP_565409.1| external sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711732|gb|ABE51659.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 592

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 124/247 (50%), Gaps = 4/247 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L   N+ L++ D +KN FV  VS+EL++PLT +   ++ L+ S+       +
Sbjct: 336 ELERSNDYLQNANKKLKELDRLKNDFVSMVSHELKTPLTAMKTSSEFLRESECS--REIK 393

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I  +      +V+D+LD++ +++G MK     + + +++     ++     + +
Sbjct: 394 EEMLDLIIRNIDRQARMVDDLLDISRIESGKMKFTPEDVNIKEIIEISLHNVTKHAKDKS 453

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+I V     + +   D+ +L++IF  +L+NA+ F+ +   V +           S+K+N
Sbjct: 454 IKIMVNCPDDVPAISTDKDKLIRIFVNLLTNAIKFTPEEGEVTVIVEDHEDYLQTSIKDN 513

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+    +F++F        R   G GLGL+I++  I+  GG + + S     +T 
Sbjct: 514 GIGILEEKRDKIFDKFYQVDSTATRKAGGTGLGLAIIKGIIDGQGGKIYLESETGKGSTF 573

Query: 785 NCRIPSK 791
             R+P +
Sbjct: 574 TFRLPKE 580


>gi|299831225|gb|ADJ55753.1| hypothetical protein [Clostridium sporogenes]
          Length = 616

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 171/388 (44%), Gaps = 25/388 (6%)

Query: 421 VQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            Q +++  Y   + ++ E      I +  + + V     +I  +N   + +   +EN   
Sbjct: 206 DQKEMQKTYMEQLLIKNENCYNLLIKNSKDAILV-HRFDKIIFANERAKQMLGYKENYNF 264

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFA--AIITSFDD------ERKSLQGTLELLSDSVLE 527
             T I+N+         ++   DL+     I  F        E+K++Q T      + + 
Sbjct: 265 EDTDIKNLIPKGEYSIIKNKFQDLYCGNENIIKFQHGVNNNKEKKTIQNT-----STYVI 319

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELRSPL 584
           Y+ +P   +  +    +     + E+ + +  E L +    +++   F+ ++S+EL++PL
Sbjct: 320 YNGMPTVLS-ILHDITSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHELKTPL 378

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I     LL   +      K+ +Y++ I  +   L+ L+N++LD   +D+G +KLN   
Sbjct: 379 NVIFTAVQLLGFYEKDVDYEKEDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVN 438

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             +  L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSN++ F++ 
Sbjct: 439 YNIVSLIEEITLSVTSYAESKEINIIFDTNVEEKIIAVDPDKIERIILNLLSNSIKFTNP 498

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
           G  + +            VK+ G  IP D  +S+F RF          + G G+GL +V+
Sbjct: 499 GGNIFVNVKDSEEYVYIHVKDTGVGIPSDKLESIFERFFQIDKTLKKNKEGTGIGLHLVK 558

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
           SF+ +H G V+I+S     T    ++P+
Sbjct: 559 SFVEMHKGEVTINSELGKGTEFIIKLPA 586


>gi|163793548|ref|ZP_02187523.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159181350|gb|EDP65865.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 514

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/503 (21%), Positives = 214/503 (42%), Gaps = 27/503 (5%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           Q       LH+L   +   +    + F N S   ++    A +     +  + E  R  +
Sbjct: 2   QQNRDLVFLHSLDEGVVGVNDASTIVFVNASAERMFGYSAAEMLGQSLDVLIPENHRDRH 61

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWM--FEN 418
               + + + ++++  S     E    T    +G      V+ +     GG I +    +
Sbjct: 62  ----ESDVEKFRQSAQSSRMMQERGGVTGRRKDGNQFDAEVSISKISFDGGQILLALVRD 117

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPG 477
           +T +   + +   L       ++  ++ V +     G I  +N    +L+  + + L  G
Sbjct: 118 VTERARADARLRALEARHRVILETCADAVLLADAVTGAILDANDQAGALFGCDGSAL-IG 176

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII----PL 533
            H   + A       + D  D +    T       +   T+      ++   I      +
Sbjct: 177 IHKDELCAW------DQDNRDGWCVERTQAAGRVHTPNATIRRRDGQLVPVEITSGMTQI 230

Query: 534 PNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             A T++ F       +A E  L E   A ++  E K  F+ +VS+ELR+PL  IIG ++
Sbjct: 231 DGAPTLVGFFRDITPHKAREEELVEAQLAAKEGSESKTRFLANVSHELRTPLNAIIGMSE 290

Query: 593 LLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +++    G + N K  +Y   I+ S   LL+++N ILD + ++   + L+   + +  +L
Sbjct: 291 IIRDEMWGGIGNPKYREYATDINDSGLHLLDVINAILDYSRIEMDKVTLHDDQVDVVGVL 350

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           ++ ++++   + E  +  ++ + G L   VADR+ + Q+   +LSNA+  +  G  + L 
Sbjct: 351 DQSRRTVQRLLDEGGLTCELQAKGPL-VLVADRRSVRQMLLNLLSNAIKHTPPGGRITLT 409

Query: 712 AAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQR-RGVGLGLSIVESFINLH 768
           A   + G+ + +V+++G  IP +    V   F +       R  G GLGL+I +  I  H
Sbjct: 410 AEAGNEGELVLTVRDSGEGIPRERLALVTEPFNLDEDISVSRQGGTGLGLAITKGLIKRH 469

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +SI+S     TT+    P++
Sbjct: 470 GGAMSINSRVGEGTTVRLVFPAE 492


>gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
 gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
          Length = 852

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 151/338 (44%), Gaps = 22/338 (6%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-------- 519
           + +E        + N  A   R  +  D   L   I     ++    Q            
Sbjct: 87  QWKEMLGYADGDLDNSIAQWQRMVHPDDLRLLQTRIEAHIQNQDSHFQAECRFKARDGQW 146

Query: 520 ---LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              LL  +V   +    P A+ ++   +++D   AE AL    E    A++ + +F+ ++
Sbjct: 147 RWFLLRGAVAARNAEGKP-ARVLVLQRDISDVKAAESALISAKEVAESANKARGAFLANM 205

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  IIG T+L   ++   L+++Q  Y++ + +S+  LL +VNDILD + ++AG
Sbjct: 206 SHEIRTPMNGIIGMTELALDTQ---LDAEQRHYLKTVKSSAEALLTIVNDILDFSKIEAG 262

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            M+       + D + E  + +A   H+  + +      ++ +  V D  RL Q+   ++
Sbjct: 263 KMEFESLVFSMQDTVLEAVRVLAVSAHKKGLELVADVRPEVPARIVGDPTRLRQVIINLI 322

Query: 696 SNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            NA+ F+ +G     V +  + +      FS+++ G  +P D  +++F  F        R
Sbjct: 323 GNAIKFTERGEVALKVEVDQSTERSVYLRFSIRDTGIGVPADKQQAIFEAFSQADVSTTR 382

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           R  G GLGL+I    + L  G + + S+    +  +  
Sbjct: 383 RFGGTGLGLAISARLVQLMDGKIWLESTPGQGSVFSFT 420


>gi|75674318|ref|YP_316739.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74419188|gb|ABA03387.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 754

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 150/374 (40%), Gaps = 16/374 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             VD   +     +      +  S+ + +    G I   N A+  L +     L      
Sbjct: 96  ALVDRNWELKEAEERARHLFESQSDLIVLRDGGGVITSVNEAYCILAQRSRTELLGSRFA 155

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +            G     +  T   D+R         ++       I     A+   
Sbjct: 156 LPVLE---------QGESAIESNGTRVYDQRVETARGPRWIAWREALMRIDADHPAELQC 206

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +VTD   +ERAL E  +   +A + K+ F+   S+E R+PL  IIG +         
Sbjct: 207 VGRDVTDRTDSERALAEARDRANEASQAKSRFLAMTSHEFRTPLNGIIGMSG---LLLET 263

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q+ YV+ + AS   LL+L+ D+LD + ++AG ++L     VL+DL+ ++ + +A 
Sbjct: 264 LLTPEQTTYVKAVKASGDALLSLIEDLLDYSRIEAGKVELECRPFVLSDLIEDITELLAP 323

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGD 718
           +     + I    D  L    + D  RL Q+   +  NA+ F+S G   ++       GD
Sbjct: 324 RAQARQLEIASYVDETLPAEVIGDAARLRQVLLNLAGNAIKFTSSGGVALIVVPGIRPGD 383

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I  D    +F  F     +      G GLGLSI +  +   GG +++ S
Sbjct: 384 IRFMVRDTGIGIAPDAQARIFREFEQADDQIIRSYGGSGLGLSISDRIVKRMGGRITLQS 443

Query: 777 SDEGVTTINCRIPS 790
             +  +T    +P 
Sbjct: 444 KPDSGSTFEVLVPL 457


>gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 786

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 147/312 (47%), Gaps = 17/312 (5%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R  N+     +   + T+ D+ER     +    SD +L ++   L     ++ F      
Sbjct: 159 RNQNDLFVQPMLVRVRTAMDEERHLADAS----SDRLLLWASGLLFGVLAIVAFWIFRPM 214

Query: 549 VRA-ERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +A  RA  +  E+L KA   D  K+ F+ ++S+E+R+P+  ++G  +LL  ++   L  
Sbjct: 215 EQAIRRAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTE---LTP 271

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  + + I  S   LL ++NDILD + ++AG + L+ +   L + + +V   ++ ++ E
Sbjct: 272 RQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSARVAE 331

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFI 720
            N+ + V  D +L    V D  R  QI + ++ NA+ F+ KG   + +     N      
Sbjct: 332 KNLELIVRVDPRLPAHVVGDAGRFRQIVTNLVGNAVKFTEKGHVLIDVGGETVNDVVQLR 391

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  IP +  ++VF +F        RR  G GLGL+I    ++L  G + + S  
Sbjct: 392 LRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVESEI 451

Query: 779 EGVTTINCRIPS 790
              +     +P 
Sbjct: 452 GRGSVFWFAVPL 463


>gi|304394570|ref|ZP_07376489.1| sensor for ctr capsule biosynthesis, histidine kinase acting on
           RcsB [Ahrensia sp. R2A130]
 gi|303293231|gb|EFL87612.1| sensor for ctr capsule biosynthesis, histidine kinase acting on
           RcsB [Ahrensia sp. R2A130]
          Length = 636

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/509 (17%), Positives = 194/509 (38%), Gaps = 30/509 (5%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 L N+    A+FD +  L   N+ ++++     + +     +++++  +  +  +
Sbjct: 131 RKLMAALENMPDGFAVFDSSGVLMAFNQRYLDMSPHIASHIKVGVQHEDIIRAVHRSGAV 190

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
             QL+    +E +    +   +  D  H  L +G+ +           TI+   ++T   
Sbjct: 191 --QLDHIDEEEFVEFATRQRLSPGDPTHDLLKDGRWIRFAARLMSDNSTIFTLSDITESK 248

Query: 424 DLETKYNTLV-------KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             E +            +   ++++ +  GV +F  + R+   N A+R +     + L P
Sbjct: 249 AQEERVIASDAALLRRTRQMEQSLEAMPTGVIMFNGEQRMVTCNTAYREMLGFPASLLKP 308

Query: 477 GTHIRNIAATCS--RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           G     +         ++E    +   A  +S  +          +    V++    P+ 
Sbjct: 309 GVARETLIENTKTLGLFDEKRMEESHNAYNSSL-NRTDHHSFRYYMADGRVIQVHFTPMS 367

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  +++ F ++T  +  + +L   +  L +++    +F    S++L+ PL  I  F D L
Sbjct: 368 DGGSIVLFFDITAELEVQASLASYSRRLERSNAELQNFAYVASHDLQEPLRKIEAFGDRL 427

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            T     L      Y++ I+ ++  +  L+ND+L  + V +   KL    I L+ ++  V
Sbjct: 428 LTKHGEHLPEGGQHYLDRINDAAGRMRQLINDLLAFSRVSSKERKL--EEIDLSAIVAGV 485

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712
              +  ++ E    + V +   L +   D  ++ Q+   ++SNA+ F+ +     V + A
Sbjct: 486 VSDLQVRIEETGASVDVTA---LPTIEGDPTQMRQLMQNLISNALKFTREDVTPVVSITA 542

Query: 713 ARDNG---------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   G                +NG        + +F  F     R +  G G+GL+    
Sbjct: 543 STQGGVDETGMPVRTCTLVFSDNGIGFENRFAEQIFTIFQRLHGRSEYAGTGIGLTTCRK 602

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSKE 792
               H G +S         T    +P K+
Sbjct: 603 IAERHHGTISAQGEIGEGATFTVTMPLKQ 631



 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 106/320 (33%), Gaps = 46/320 (14%)

Query: 160 SGSCAFL-RILSLDGIYSELAETTLKCKKLSNHISV------------FKVLFDSLDFLV 206
           SG  A + R    +G+  E  E   K K  +                      +++    
Sbjct: 85  SGEFARITRDTRPNGMVVETIEMPSKEKPQATDGYAGAHGTSGISQRKLMAALENMPDGF 144

Query: 207 WHRDQAGDILWANISYKKNTET---------EGIVFQKAIGESRKL-FKEEIKKRMISSS 256
              D +G ++  N  Y   +           +     +A+  S  +      ++  +  +
Sbjct: 145 AVFDSSGVLMAFNQRYLDMSPHIASHIKVGVQHEDIIRAVHRSGAVQLDHIDEEEFVEFA 204

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-DVSKEITVNDQL---------- 305
             ++      +     + +  +    L S       + D+++     +++          
Sbjct: 205 TRQRLSPGDPTHDLLKDGRWIRFAARLMSDNSTIFTLSDITESKAQEERVIASDAALLRR 264

Query: 306 -THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-----L 359
                + L  +   + +F+  + +   N ++ E+     + L    + + L+E      L
Sbjct: 265 TRQMEQSLEAMPTGVIMFNGEQRMVTCNTAYREMLGFPASLLKPGVARETLIENTKTLGL 324

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
               ++ E  N         S    ++ H   +++ +G+ + V  T    GG+I +F ++
Sbjct: 325 FDEKRMEESHNAYN------SSLNRTDHHSFRYYMADGRVIQVHFTPMSDGGSIVLFFDI 378

Query: 420 TVQVDLETKYNTLVKVQGET 439
           T +++++    +  +    +
Sbjct: 379 TAELEVQASLASYSRRLERS 398



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 95/276 (34%), Gaps = 11/276 (3%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +  N  + +A+FD+N  L   N +F +   +         S   ++E   +   +P   N
Sbjct: 1   MFQNSDIGVAVFDENLLLISSNPTFRDYRRLGDDQAGAGVSMRSIIEATLTNMSVP-AAN 59

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
                    +   S+ T +  +   +G+   +   + P G  +   E  + +    T   
Sbjct: 60  QHAIITTDLARLASNRTDRIDFDTGSGEFARITRDTRPNGMVVETIEMPSKEKPQATDGY 119

Query: 431 T--------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                      +     ++++ +G AVF   G +   N  +  +     + +  G    +
Sbjct: 120 AGAHGTSGISQRKLMAALENMPDGFAVFDSSGVLMAFNQRYLDMSPHIASHIKVGVQHED 179

Query: 483 IAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTML 540
           I     R    + D  D    +  +          T +LL D   + ++   + +  T+ 
Sbjct: 180 IIRAVHRSGAVQLDHIDEEEFVEFATRQRLSPGDPTHDLLKDGRWIRFAARLMSDNSTIF 239

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T  ++T+S   E  +   + AL +        ++ +
Sbjct: 240 TLSDITESKAQEERVIASDAALLRRTRQMEQSLEAM 275


>gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 415

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 144/353 (40%), Gaps = 42/353 (11%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L       +  ATC+       G      I+T  DD     +   +       ++ + PL
Sbjct: 59  LDVMMPGMDGFATCAALRRLPGGEHTPILIMTGLDD----FESITKAYDAGATDFIVKPL 114

Query: 534 PNAQTMLTFVNVT--------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            NA  +   +           +   ++  LT+  +A  +   +K+ F+  +S+E+R+P+ 
Sbjct: 115 -NAMLLTHRIRYMVRADQVLQELRESQATLTQARDAAIEGARLKSEFLATMSHEIRTPMN 173

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G TD L  +    L ++Q    + I +S   LL ++NDILD + +++G + L     
Sbjct: 174 GVLGMTDWLLDT---PLTAEQLDCAQTIRSSGDALLVIINDILDFSKIESGKLSLELLDF 230

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L+  L+ V      +     + +   I++   GS   D  RL QI S +L+NA+ FS  
Sbjct: 231 DLSTFLDRVMALFGERAQRKGLLLTSRIAEDVPGSLCGDPARLQQILSNLLANAIKFSEH 290

Query: 705 GST-VILKAARDNGD----------------------FIFSVKNNGSSIPEDMCKSVFNR 741
           GS  V+++  +   +                        FSV +NG  I       +F  
Sbjct: 291 GSVSVLVELDQRPAEQGLEFPATRYGEPSAQQEQVTHIRFSVSDNGIGIEPSAFSKLFQP 350

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           FV       R   G GLGL+I +  + L GGH+   S     +     +P ++
Sbjct: 351 FVQADGSTTRKYGGTGLGLAICKQLVELMGGHIGAESEPGSGSIFRFTVPLQQ 403


>gi|326317703|ref|YP_004235375.1| multi-sensor signal transduction histidine kinase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374539|gb|ADX46808.1| multi-sensor signal transduction histidine kinase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 841

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/505 (19%), Positives = 185/505 (36%), Gaps = 32/505 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +         +L ++   I   D+N  L + N  +  LW    A          +  
Sbjct: 348 QDRIARSERDLALLLRSVQELIFRTDRNGVLTYVNARWSALWGEPPA--------SAIGR 399

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-NPRGGTIWMF 416
            L+       Q       +    V   +   +      + + L V         G +  F
Sbjct: 400 RLQDLVDPEGQERVAAMLDPRSQVALRTRQLRVRSPQGDERVLDVAAVPLRAADGQVLAF 459

Query: 417 E----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
                ++T +     +    +  Q   ++   + + +     R+ L N A+         
Sbjct: 460 AGSAVDVTERERAAQRMRAQLAFQNLLLETSPQPMMLTDMAHRVVLVNRAWEQ------- 512

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
             + G     I       Y   +  +   +       ER    G     +  VL+ ++  
Sbjct: 513 --AMGCTRERIVGERRALYPGEEEDNAALSGGGGTTLERDLPYGDGTRRATRVLKAAVHG 570

Query: 533 LPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                   +   V++++   AERA  E ++A  +A   ++ FV ++S+ELR+PL  IIGF
Sbjct: 571 DYGDVTGVLSILVDISEFREAERATREAHDAAEEAARTRSQFVANMSHELRTPLQAIIGF 630

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L       S + +       I A+   +L LVND+LD+A +++ I  ++     L   
Sbjct: 631 AEL---GSARSQDERLGAMFSDILAAGQRMLALVNDLLDVAKIESDIGTIHLERTDLRGH 687

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +  V + +   +      +++          AD +R  Q+   +L+NA+ FS +GS + L
Sbjct: 688 IRTVARELGPLVASRGQDLRIDLPLHPLVARADPRRFQQVVRNVLANAIKFSPEGSCIQL 747

Query: 711 KAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFIN 766
           +A  D          V++ G  IP      +F+ F  ++    R  G GLGL+I    + 
Sbjct: 748 RAGMDADSTDTICIEVQDQGPGIPPVELDRIFDAFAQSSRTRNRSGGTGLGLAICRKIVE 807

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
              G +   +  EG       +P +
Sbjct: 808 ALDGRIHARN-VEGGAVFRIELPVR 831



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 88/265 (33%), Gaps = 27/265 (10%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
               + +      + E+  +  +   L   N   + +W     +   IG+  Q +  P+ 
Sbjct: 352 ARSERDLALLLRSVQELIFRTDRNGVLTYVNARWSALWGEPPASA--IGRRLQDLVDPEG 409

Query: 109 DTDLLSFENWLKFHHYIKLSKATEKLRK-EGQSFDLVAETQNDCAIKIEGRVSGSCAFLR 167
              + +    L     + L     ++R  +G    L        A   +G+V        
Sbjct: 410 QERVAAM---LDPRSQVALRTRQLRVRSPQGDERVLDVAAVPLRA--ADGQV-------- 456

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            L+  G   ++ E     +++   ++   +L ++    +   D A  ++  N ++++   
Sbjct: 457 -LAFAGSAVDVTERERAAQRMRAQLAFQNLLLETSPQPMMLTDMAHRVVLVNRAWEQAM- 514

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
             G   ++ +GE R L+  E +     S          +     G  ++ ++++      
Sbjct: 515 --GCTRERIVGERRALYPGEEEDNAALSGGGGTTLERDLP-YGDGTRRATRVLKAAVHGD 571

Query: 287 -----GEAGIAIDVSKEITVNDQLT 306
                G   I +D+S+         
Sbjct: 572 YGDVTGVLSILVDISEFREAERATR 596


>gi|299145534|ref|ZP_07038602.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
 gi|298516025|gb|EFI39906.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
          Length = 500

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/516 (21%), Positives = 213/516 (41%), Gaps = 43/516 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +  N Q  +  ++L+ L   + I D NR +   N+    L E+          +  +   
Sbjct: 1   MEANGQTLYNDDLLNILPDGVIILDINREVIQLNQQ--ALTEL--------HVHSSVNAM 50

Query: 359 LRSANKLPEQLNWKTW--KENIFS-VYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG-- 411
           +     LP    +K    KE+I S + +     K  + LP    +   V  T  P  G  
Sbjct: 51  M----PLPTNKIFKLLNKKEDILSTILEEIHQGKKVYSLPEHTFMQEQVDYTQFPIRGEF 106

Query: 412 -----------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI--KL 458
                       ++ F N+TV++  E   NT ++       +     + F  D R    L
Sbjct: 107 ATMENEEGEKIILFFFRNITVELTQEYILNTALQRTRIYPWYYDISRSEFTLDDRYFEHL 166

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
             PA  +   T E  ++   H  +       +  +  G   F   +  F   R    GT 
Sbjct: 167 GIPAGENNTLTMEEYVNM-IHPDDRQTMADAFVVQLSGNTTFDKTV-PFRLRRG--DGTW 222

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E         + I     + +   +++ +    E  L E  +   ++D +K +F+ ++S+
Sbjct: 223 EWFEGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSH 282

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GF+D++ ++       +++ +V  IS +S  L+ L++DILDL+ +++  +
Sbjct: 283 EIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNTI 342

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           K  YS   L  ++ ++++      +   I IK I          D  RL Q+    ++NA
Sbjct: 343 KFTYSNYSLKSIMKDIEKE-QVVKNVPEIEIKAILPDDDIYITTDATRLKQVICNFINNA 401

Query: 699 MDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
             F+ +G      +    ++      V++ G  IP++  K +F+RF        ++G GL
Sbjct: 402 RKFTEEGYIHFGFMVNPENDDSVCLFVEDTGEGIPQECQKEIFDRFYKVNTF--KQGTGL 459

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLSI ++ +    G +S+ S     +     +P ++
Sbjct: 460 GLSICKTIVEHLQGSISVVSEVGRGSRFTVTLPLEK 495


>gi|295697074|ref|YP_003590312.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
 gi|295412676|gb|ADG07168.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
          Length = 622

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 150/383 (39%), Gaps = 34/383 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K +        T+ HL  GV      GR++  NPA   L   +                
Sbjct: 249 EKLHLEKDRLEITMQHLVSGVMALDGRGRVEWINPAMAELIGEQRV-------------I 295

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFVNV 545
             R++       ++A I  +  +        +   +   +E  ++P+P          + 
Sbjct: 296 GRRFWGIQAFQPIYAMIDQAVRNGEGGRYDGVFGPARREVEVHVVPIPRIPGQGQEAGST 355

Query: 546 TDSVRAE--------------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            D  R E                +       R+ ++++  FV +VS+EL++P+T I G  
Sbjct: 356 KDVGRPEGRHFLRGSSLSGGAVVIIHDVTERRRLEQVRKEFVTNVSHELKTPVTAICGLA 415

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           + +    L     ++  ++E I   +  L  LV D+LDL+ +++ +  L+   + L ++ 
Sbjct: 416 ETVVEEDLAP--EERRHFLELIHREARRLEQLVRDLLDLSRLESHLTTLHRRPVDLAEMA 473

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V Q       +    + +  +G   + V D  R+ Q+ S ++ NA+ ++  G  V ++
Sbjct: 474 RDVVQDYGYAAEQAGTDLYLDKEGDCRAEV-DPDRVRQVLSNLIDNALKYTPAGGRVDVR 532

Query: 712 A-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
               D  +    V + G  IP +    VF RF            G GLGL+IV+  + LH
Sbjct: 533 VLGTDPREVKVEVADTGVGIPPEDRDRVFERFYRVDKARARTTGGTGLGLAIVKHVVQLH 592

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG V + S     +    + P +
Sbjct: 593 GGRVGVESEVGKGSRFFVQFPRR 615



 Score = 41.1 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 103/333 (30%), Gaps = 48/333 (14%)

Query: 81  CLTIVWDGKDETP--EIIGQLHQRIDIPQTDTDLLSFENWL-----KFHHYIKLSKATEK 133
              +V           I+G +     + Q      ++  WL          +  S    +
Sbjct: 132 GRLVVRAASPVRAGDRILGVVWLETPLAQVVAPFGAWWAWLVGLGVSVSLGVAWSAVVAR 191

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
             + G     + + +   A+  +GR  G   F R   L  +  ELAE     ++ +  ++
Sbjct: 192 DIRTG-----LLQLRQAAAVWAQGRYHG-LPFRRKDELGQVAEELAEMASALQRSTEDLA 245

Query: 194 V-----------FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK-----AI 237
           +            ++    L   V   D  G + W N +  +    + ++ ++     A 
Sbjct: 246 MSVEKLHLEKDRLEITMQHLVSGVMALDGRGRVEWINPAMAELIGEQRVIGRRFWGIQAF 305

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
                +  + ++         +  F      +         I R+     EAG   DV +
Sbjct: 306 QPIYAMIDQAVRN--GEGGRYDGVFGPARREV---EVHVVPIPRIPGQGQEAGSTKDVGR 360

Query: 298 EITVNDQLTHTYEILHNLTVA--IAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSND 353
                  L  +     +L+    + I D  + R L+   + FV    +         +  
Sbjct: 361 PEG-RHFLRGS-----SLSGGAVVIIHDVTERRRLEQVRKEFV--TNVSHELKTPVTAIC 412

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            L E +   +  PE+   + + E I    +  E
Sbjct: 413 GLAETVVEEDLAPEER--RHFLELIHREARRLE 443


>gi|256425249|ref|YP_003125902.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256040157|gb|ACU63701.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 673

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/363 (24%), Positives = 160/363 (44%), Gaps = 19/363 (5%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            + + + GV V   + R+   N  F      E   +  G     I    SR     +  +
Sbjct: 33  LLQNSNAGVLVTDGNHRVIWVNSVFEQNAGQEAMHI-FGMSYTAIIRYFSRMV---EHVE 88

Query: 499 LFAAIITSFDDERKSLQG-TLELLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRAER--- 553
            F   +     ++K   G  + L    + E S  PL    + M +   + D  R +    
Sbjct: 89  DFEQKMRDLRLKKKPYFGWEIILRDGRIYEVSYNPLIEKRRFMGSVWQIVDVSRHKMPRS 148

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L        +A   +  F+  +S+E+R+PL  I+G T LL+ +   +L+ KQ  Y+  +
Sbjct: 149 QLDLARRQAEEARGAQKEFLASMSHEIRTPLNVIVGMTHLLEET---NLDPKQRDYINIL 205

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS IL+ L++DILDL+ ++AG +++N     L +L+  ++ +   K+ +  + I    
Sbjct: 206 KHSSGILMGLISDILDLSKIEAGELQVNQREFNLTELVQSLRHTFELKIGQRPVSISASI 265

Query: 674 DGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGS 728
           D +L    V D   L QI   +L NA  F+ +G     V L + +++  ++ F V + G 
Sbjct: 266 DPQLKTWLVGDDMLLNQILMNLLGNAEKFTREGEIAINVQLDSWQEDKCWVTFQVCDTGI 325

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I +D  + +F  +       R    G GLGL+I +  + L GG + +  +D   T  + 
Sbjct: 326 GIQKDKLELIFQNYKQAEQEIRENYGGTGLGLAISKQLVELQGGSIVVEEADGFSTCFSF 385

Query: 787 RIP 789
            +P
Sbjct: 386 TLP 388



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 25/168 (14%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L N    + + D N  + + N  F +      A      S   ++ +   +  +    +
Sbjct: 33  LLQNSNAGVLVTDGNHRVIWVNSVFEQ-NAGQEAMHIFGMSYTAIIRYF--SRMVEHVED 89

Query: 371 WKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNPRG----GTIWMFENLTV--- 421
           +    E      +  +     W   L +G+   V            G++W   +++    
Sbjct: 90  F----EQKMRDLRLKKKPYFGWEIILRDGRIYEVSYNPLIEKRRFMGSVWQIVDVSRHKM 145

Query: 422 ---QVDLETKYNTLVK-VQGETIDHLSEGV-----AVFGPDGRIKLSN 460
              Q+DL  +     +  Q E +  +S  +      + G    ++ +N
Sbjct: 146 PRSQLDLARRQAEEARGAQKEFLASMSHEIRTPLNVIVGMTHLLEETN 193


>gi|330826610|ref|YP_004389913.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
 gi|329311982|gb|AEB86397.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
          Length = 829

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/505 (18%), Positives = 206/505 (40%), Gaps = 35/505 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                  +L+  ++ +  L   I   D    ++F N  + +L     A       +D + 
Sbjct: 337 ATAQREQELSILFKSVKEL---IFRTDAQGVIRFVNPRWRQLTGQVPAAARGRRLSDIV- 392

Query: 357 EFLRSANKLPE--QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-- 412
                    PE        ++    S ++ S+        P+G+T  + +T  P  G   
Sbjct: 393 --------EPESSPTVAALFQAGGSSGWRRSKA---CLRGPSGKTQVLEITVMPLAGRDG 441

Query: 413 -----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                     ++T     + K    + +    ++     + +    GR+   N A+ S  
Sbjct: 442 QPYGYAGSAVDITALDYAQKKLQHQLALTERVLESNPLPMCLTDVQGRLVTVNAAWESFM 501

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               ++     +   + A  ++ Y+      L       +++      G++  +  + + 
Sbjct: 502 GVSRSQALGRLNRDILPAAQAQAYDARTEQLLREGGTVRYEERLPRADGSMRDVQITKVL 561

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      ++  +++TD + A           ++A   K+ FV ++S+ELR+PL +I
Sbjct: 562 LQSAQGEPMGVLVNKLDITDFLAA-------RYKAQEASRTKSEFVANISHELRTPLQSI 614

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF++L           K +   + I A+   +L LVND+LD++ +++ +    ++   +
Sbjct: 615 LGFSEL--GMVRARQYEKYAAMFQDIHAAGQRMLGLVNDLLDISKIESTVGAFRFARNDV 672

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            DLL +V   +   +    + +++           D  R  Q+   +LSNA+ FS +G T
Sbjct: 673 RDLLEDVAAELQMLLERKGLTLRLDLGRVPLVSKVDSTRFAQVARNVLSNAVKFSPEGGT 732

Query: 708 VILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFI 765
           + + A+  D    +  V+++G  IP    ++VF+ FV ++    +  G GLGL+I    +
Sbjct: 733 IEMSASTPDESTILVQVRDHGPGIPPAELEAVFDAFVQSSKTRDESGGTGLGLAICRKIV 792

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
             HGGH+  +++ +G T  +  +P+
Sbjct: 793 TAHGGHIHATNAPDGGTIFHIVLPT 817



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/320 (9%), Positives = 85/320 (26%), Gaps = 52/320 (16%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY-----HSLL 76
             +        ++           R R +   K++E     ++   +LS         + 
Sbjct: 298 GPLLFMALATVLIGLMTRSAWRNARAREAAQLKLDEIRKATAQREQELSILFKSVKELIF 357

Query: 77  TENNCLTIVWDGK-----------DETPEIIGQLHQRIDIPQTDTDLLSFEN--WLKFHH 123
             +    I +                    +  + +    P       +  +  W +   
Sbjct: 358 RTDAQGVIRFVNPRWRQLTGQVPAAARGRRLSDIVEPESSPTVAALFQAGGSSGWRRSK- 416

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
                        + Q  ++            +G+  G           G   ++     
Sbjct: 417 -----ACLRGPSGKTQVLEITVMPLAGR----DGQPYG---------YAGSAVDITALDY 458

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
             KKL + +++ + + +S    +   D  G ++  N +++      G+   +A+G   + 
Sbjct: 459 AQKKLQHQLALTERVLESNPLPMCLTDVQGRLVTVNAAWESFM---GVSRSQALGRLNRD 515

Query: 244 FKEEIKKRMISSSALE------KNFCETVSTLEHGNNKSYKIVRVL------NSFGEAGI 291
                + +   +   +          E       G+ +  +I +VL         G    
Sbjct: 516 ILPAAQAQAYDARTEQLLREGGTVRYEERLPRADGSMRDVQITKVLLQSAQGEPMGVLVN 575

Query: 292 AIDVSKEITVNDQLTHTYEI 311
            +D++  +    +       
Sbjct: 576 KLDITDFLAARYKAQEASRT 595


>gi|312892001|ref|ZP_07751502.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
 gi|311295498|gb|EFQ72666.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
          Length = 1605

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/634 (18%), Positives = 235/634 (37%), Gaps = 39/634 (6%)

Query: 183  LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS------YKKNTETEGIVFQ-K 235
             + +KL+     FK++  + +  +W  +   + +W + +      Y+++ ET  I F   
Sbjct: 985  ERTQKLTESEERFKLVSTATNDTIWDWNLVSNTMWRSDNFTSMFGYQRDDETNQISFWFG 1044

Query: 236  AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-----AG 290
             I    +L  E+     I+    + +        +          R+L           G
Sbjct: 1045 KIHPDDRLRVEQSVFNAINHHEKQWSAEYRFQKADGTYAIILDRGRILEDEFHTPYRLVG 1104

Query: 291  IAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
              ID+++ I    +L        ++  +  + +   D +  L   N +F+ +     A +
Sbjct: 1105 SIIDITRLIETEKRLSQSENKFRKVFDSNLIGMCFADPDGRLLETNDAFLNMLGYSRADM 1164

Query: 347  ATNPSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVI-- 403
             T          L   N  P      + + +         + ++  +   +G  + V+  
Sbjct: 1165 ETG--------QLNLQNLTPPTSRQASSRAQKELDENGFCQPYEKQYIRKDGSLVSVLKG 1216

Query: 404  ---VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLS 459
               ++ + +  ++    ++T Q +L+   +   +       +    + +  GP+   +  
Sbjct: 1217 SAMLSEDEKQISVSYILDITRQKELQHMISKQQEEFYSIFTNAPALITIRRGPNLVYEFV 1276

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            N AF  L   +         I            +++         T      +       
Sbjct: 1277 NNAFIRLDGQQNYIGRSTAEINQWWPGTELGRADAEVMR-SGQPFTGRSVRIQWPNAQTG 1335

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              +D   ++   P+ N    L  +        E  L +  E   +    K+ F+   S+E
Sbjct: 1336 KQADHWFDFIFTPVFNDDDKLDGIAFFGFDVTE--LVKARETTEELMHKKDEFLSIASHE 1393

Query: 580  LRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            L++P+T++ G   +L+         +    +V   +  +  L  LV+D+LD+  + AG +
Sbjct: 1394 LKTPITSLKGSLQILQRIMAREGGKNTVMDFVGKANNQTNKLTTLVDDLLDVTKIQAGKL 1453

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
             LNY T     L+ EV + +  +  E      +  +G L +  ADR RL Q+ +  L+NA
Sbjct: 1454 LLNYETFDAVQLVKEVLEEV--RAQEGTHEFILQGEG-LITITADRTRLEQVITNFLTNA 1510

Query: 699  MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLG 757
            + +S KG  VIL  +    +F  +V++ G  IPE     +F+RF           G+GLG
Sbjct: 1511 IKYSPKGDKVILNCSLFENEFKLTVQDFGIGIPEAKKDYLFDRFYRVQESSTHFSGLGLG 1570

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            L I    I  H G + + S+     T    +P +
Sbjct: 1571 LYISAEIIKRHRGQIGVESAIGEGATFWFTVPLQ 1604



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 94/287 (32%), Gaps = 46/287 (16%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           + + + +ND L +      +  +     D N  ++  N + + +  +  A          
Sbjct: 716 IRELVELNDDLDNY---FRSTDIGQIFVDANLRIRKFNPAAINMINLIDA---------- 762

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-----QTLHVIVTSNPR 409
             +  R  N L   + +     +I SV  + +  +    L +G     + +  +      
Sbjct: 763 --DVGRPINHLSNNILYDNLIADIHSVLATGQVIEKEVLLKSGTNNLMRIMPYVKKDGQH 820

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF---------GPDGRIKLSN 460
            G +  F +++V V+       L ++     +  +  +  F          PD R    N
Sbjct: 821 DGVVISFIDISVIVE-------LNQIISGVFNASTAAILAFRDNRTEGSKNPDFRCIAYN 873

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A  +L+      +     +++          E        +         K+ +  L  
Sbjct: 874 DAALTLFGKPAVEMDAQPRLQSFPELIGIASAEQYAKAARQS---------KAWETELHT 924

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             D+  + +I P+     +++  N+T    AE+ L +    L  A E
Sbjct: 925 GQDNWYQVTIGPMREG-FVVSLTNITARKNAEQKLKKNYHELINARE 970



 Score = 41.1 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 88/277 (31%), Gaps = 40/277 (14%)

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSALEKNFCETVST 268
           D    I   N +             + I   S  +  + +   + S  A  +   + V  
Sbjct: 741 DANLRIRKFNPAAINMINLIDADVGRPINHLSNNILYDNLIADIHSVLATGQVIEKEV-L 799

Query: 269 LEHGNNKSYKIVRVL----NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
           L+ G N   +I+  +       G     ID+S  + +N  ++    + +  T AI  F  
Sbjct: 800 LKSGTNNLMRIMPYVKKDGQHDGVVISFIDISVIVELNQIISG---VFNASTAAILAFRD 856

Query: 325 NR---------YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           NR             +N + + L+      +   P               PE +   +  
Sbjct: 857 NRTEGSKNPDFRCIAYNDAALTLFGKPAVEMDAQPRLQSF----------PELIGIAS-A 905

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIWMFENLTVQVDLETKYNTLVK 434
           E      + S+  +   H   GQ     VT  P R G +    N+T + + E K   L K
Sbjct: 906 EQYAKAARQSKAWETELH--TGQDNWYQVTIGPMREGFVVSLTNITARKNAEQK---LKK 960

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              E I+   EG+          L N  +    K  E
Sbjct: 961 NYHELINA-REGLKNLNSQ----LENKVYERTQKLTE 992


>gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 508

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 161/369 (43%), Gaps = 19/369 (5%)

Query: 425 LETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++ +   +  +   T+ ++L + + V   +  +   N A     +T  ++ + G   R+I
Sbjct: 1   MDRRVIDIAPIARATLVENLDDRLIVLDENDHVIDLNRAASDSLRTTRSQ-AFGRPARDI 59

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A                  IT       +   TL+  +   L     P      +L   
Sbjct: 60  LAPWPPVLAHLHAHHPLRTEITLGTH---TYDFTLQPATTE-LHAKAPP-----RILLLR 110

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  + E  L    +A   AD  ++ F+  +S+E+R+P+  +IGFT LL+ +    LN
Sbjct: 111 DITERKQDEHRLRAAKDAAVAADRAQSRFLAMMSHEIRTPMNGVIGFTQLLRDT---PLN 167

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV+ I+ S   LL +++DILD + V AG ++L  +   L  L+ +  Q + T   
Sbjct: 168 PRQMEYVDLITRSGQSLLVIIDDILDYSKVSAGHLQLERAPCELRRLIEQHIQLLHTGAR 227

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIF 721
           + NI I +  D  + S  + D  R+ QI S ++SNA+ F+  G  V +    D       
Sbjct: 228 QKNITIDLHIDPLVPSLIIGDAVRIGQIVSNLVSNAIKFTHHGG-VHIHLVPDGPRCLAL 286

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  IP +  + +F  F        RR  G GLGL I      L GG +++SS   
Sbjct: 287 HVTDTGIGIPPEAHRRIFEPFSQADGSTTRRYGGTGLGLPITRLLCTLMGGTLTLSSQPG 346

Query: 780 GVTTINCRI 788
             +T     
Sbjct: 347 HGSTFTATF 355


>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1727

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/409 (22%), Positives = 164/409 (40%), Gaps = 52/409 (12%)

Query: 399  TLHVIVTSNPRGGTIWMFENL----TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
                I    P    +  +  +    T+ +++   YN  ++        LSE  AV  PD 
Sbjct: 831  IYTYISQPYPHLACVAEYLEISYESTLNLEISVNYNPYIERL------LSEDKAVVSPD- 883

Query: 455  RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
                ++P   S              ++++ A  + Y +E +G  +        D+ R+  
Sbjct: 884  --VFADPLLESSAPMCRRMG-----LKSMLAIRTSYNSEPNGIIMLHQ----CDNLRQWT 932

Query: 515  QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
               +E L D   +  +             +        +AL E   A   A   K+ F+ 
Sbjct: 933  DEEVEFLEDVASQVGLTLFQAKLLEFEVKSRQQLADKNKALEEARLAAEIASRAKSEFLA 992

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             +S+E+R+P+  +IG T LL      +LN +Q  +VE I  S   LL ++NDILD + ++
Sbjct: 993  TMSHEIRTPMNAVIGMTGLLLDM---NLNPEQRDFVETIRTSGDALLTIINDILDFSKIE 1049

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSK 693
            +G ++L +    L   + E    ++ +  E  + +  I D       V D  RL Q+   
Sbjct: 1050 SGKLELEHQPFKLRTCIEESLDLLSARASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVN 1109

Query: 694  ILSNAMDFSSKGSTVI--------------LKAARDNG----------DFIFSVKNNGSS 729
            +LSNA+ F+++G  ++              + +   N           +  F+VK+ G  
Sbjct: 1110 LLSNAVKFTNQGEVIVSVTSSLIQDSAQSLISSEEKNESQPSISPPIYEVQFAVKDTGIG 1169

Query: 730  IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            IP D    +F  F  V  +   Q  G GLGL+I +    + GG + + S
Sbjct: 1170 IPPDRMHRLFKAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVS 1218


>gi|304317396|ref|YP_003852541.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778898|gb|ADL69457.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 607

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 175/394 (44%), Gaps = 27/394 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDL--ETKYNTLVKVQGETID---HLSEGVAVFGPDGRIK 457
           I T +  G     F N+  ++    E++   ++  + +T+     +S+ + V   D +I 
Sbjct: 231 ITTDDELGKLATEFNNMIKRLKQYEESQLGKIMDERNKTLSIVKSISDPLLVLNSDYKII 290

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L N A   L+  EE        + ++               LF  I +  D    + +  
Sbjct: 291 LLNSAAEELFGIEEKNAVNKHFLLSVKDE-----------KLFEEINSIVDSNFVNNKIE 339

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               S+   + +I P+ N ++ ++ + +      E          ++ D++K+ F+  +S
Sbjct: 340 QIKYSNKYYDVTISPIENYKSEISDILLVFHNITE---------FKELDQVKDDFISIIS 390

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E ++PLT+I+  T ++   K+G++N KQ   +  I      L  LVN++++L  +++G 
Sbjct: 391 HEFKTPLTSIMMGTSIILEEKIGTINEKQKSTLLAIEEEGEKLTELVNELIELTKIESGK 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
              N+    +  ++    + +     +  + +    D  L    AD +++  + + +++N
Sbjct: 451 EVYNFKCCSMFGIVENTIKPLYNIASDKGVNLSHSVDEDLPCVYADPEKISWVLNNLITN 510

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVG 755
           A+ ++  G  + + A+ DN     SVK+ G  IP++    +F++F    N    + +G G
Sbjct: 511 ALKYTDAGDDISISASIDNNMMQISVKDTGVGIPKEYKDKIFDKFFHTKNGDDFEIKGTG 570

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL++V+  +  HGG V   S  +  +     +P
Sbjct: 571 LGLAVVKEIVEAHGGKVWCESDLDVGSNFMFTLP 604


>gi|222054922|ref|YP_002537284.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564211|gb|ACM20183.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 756

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/665 (15%), Positives = 226/665 (33%), Gaps = 59/665 (8%)

Query: 164 AFLRILS--LDG---IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILW 217
           A +R     + G   +  +++E     ++L    +             W  D     + W
Sbjct: 109 AVVRDRDGAISGYVAVKQDVSEGKQTEERLKAREAELSEAQRIARVGSWTWDAESDTVYW 168

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS----SSALEKNFCETVSTLEHGN 273
           +  +Y+     + +      G   KLF  E   R+      +      +   +  L    
Sbjct: 169 SEQTYRTCGFDQSVAPPSFYGGHGKLFPPEDLARLTQCIDLALRDGTPYQLDLQMLCPDT 228

Query: 274 NKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAI-F 322
            +   +             G  G   D+++     +++     +L     NL  A+ I  
Sbjct: 229 PRWITVRGEATRDAEGRIKGLRGSIQDITERKRAEEEIQCQRRLLESVIMNLPAAVLIAV 288

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
             +  ++  N ++  L            +  E+          PE    +     +    
Sbjct: 289 GHDLRIKMINPAYSRL---APGKEIIGKTFPEVW---------PEIPALRDVFLKVLETG 336

Query: 383 KSSETHKDTWHL---PNG---------QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           +  E   + +H+   P G             V +  N   G +      T +   E    
Sbjct: 337 EPYEVVDEPYHISRFPGGLLEKRYFSWSLFRVRLPGNEEWGLLNTAWETTERKRSEDALR 396

Query: 431 TLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              +      +H + G+  V   D      N AF  +     + +   T    I      
Sbjct: 397 VSEEKFRSFFEHAAVGMGRVRFTDACWIDVNGAFCRMLGYSPDAMK-ATPWPQITHPEDV 455

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNAQTMLTFVNVT 546
             +      +    + ++  E++ +      +   +   L  +   LP+ + +    ++T
Sbjct: 456 DMDLIPFRRMAVGELDTYSVEKRFIHKDGHHVWARLALSLVRNAEGLPDYE-IAVIEDIT 514

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R+E         ++++++    F    S++L+ PL  I  +  LL+    G L+ K 
Sbjct: 515 DRKRSEAERERLLSEVQRSNQELQQFAYIASHDLQEPLRMISSYISLLERKYSGQLDEKA 574

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+ Y+   +  +  L+  +L+ + +     +     +  N+  +    ++  ++ E+ 
Sbjct: 575 ITYLSYVVDGAKRMQKLIEGLLNYSRI---SREARLVPVDTNESFSAAVANLEQRIRESG 631

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVK 724
             +    +  L   + D  +L+Q+F  ++ N + +   GS   V L A     +++FSV 
Sbjct: 632 GDVT---NDPLPIVLGDETQLVQLFQNLVGNGLKYRKPGSIPHVHLSARPAGLEWLFSVS 688

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +NG  I       VF  F     + +  G G+GL++ +  +  HGG + + S     TT 
Sbjct: 689 DNGIGIESQHYDRVFQIFQRLHTKEEYPGTGIGLALCKKIVERHGGRIWVESRPGEGTTF 748

Query: 785 NCRIP 789
              +P
Sbjct: 749 YFILP 753



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 114/384 (29%), Gaps = 52/384 (13%)

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK-----------------RM 252
           D  G + + N  +   TE  G    + +G S    + +                     M
Sbjct: 36  DADGMVDFVNDKF---TEITGYEAGETVGRSLWSLQCQETPTCTDLEKFVLTRGDWHGEM 92

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
           ++       + E+VS     +             G   +  DVS+     ++L      L
Sbjct: 93  VNRRKDGAPYWESVSIAVVRDRD-------GAISGYVAVKQDVSEGKQTEERLKAREAEL 145

Query: 313 ----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
                   V    +D      + +         D +     PS      F     KL   
Sbjct: 146 SEAQRIARVGSWTWDAESDTVYWSEQTYRTCGFDQS--VAPPS------FYGGHGKLFPP 197

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHL-----PNGQTLHVIVTSNPRG---GTIWMFENLT 420
            +     + I    +    ++    +     P   T+    T +  G   G     +++T
Sbjct: 198 EDLARLTQCIDLALRDGTPYQLDLQMLCPDTPRWITVRGEATRDAEGRIKGLRGSIQDIT 257

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAV-FGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            +   E +     ++    I +L   V +  G D RIK+ NPA+  L   +E        
Sbjct: 258 ERKRAEEEIQCQRRLLESVIMNLPAAVLIAVGHDLRIKMINPAYSRLAPGKEIIGKTFPE 317

Query: 480 IR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNA 536
           +   I A    +    +  + +  +   +   R    G LE    S S+    +      
Sbjct: 318 VWPEIPALRDVFLKVLETGEPYEVVDEPYHISRFP-GGLLEKRYFSWSLFRVRLPGNEEW 376

Query: 537 QTMLTFVNVTDSVRAERALTEKNE 560
             + T    T+  R+E AL    E
Sbjct: 377 GLLNTAWETTERKRSEDALRVSEE 400



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 59/440 (13%), Positives = 133/440 (30%), Gaps = 55/440 (12%)

Query: 41  IILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE--NNCLTI-----VWDGKDETP 93
            I ++R R+            +SE      +  +   E              WD + +T 
Sbjct: 107 SIAVVRDRDGAISGYVAVKQDVSEGKQTEERLKAREAELSEAQRIARVGSWTWDAESDTV 166

Query: 94  EIIGQLHQRIDIPQTDTDLLSFE---NWLKFHHYIKLSKATEKLRKEGQSFDLVAET--- 147
               Q ++     Q+      +             +L++  +   ++G  + L  +    
Sbjct: 167 YWSEQTYRTCGFDQSVAPPSFYGGHGKLFPPEDLARLTQCIDLALRDGTPYQLDLQMLCP 226

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
                I + G  +   A  RI  L G   ++ E     +++     + + +  +L   V 
Sbjct: 227 DTPRWITVRGEATRD-AEGRIKGLRGSIQDITERKRAEEEIQCQRRLLESVIMNLPAAVL 285

Query: 208 H-RDQAGDILWANISYKKNTETEGIVFQ--KAIGESRKLFKEEIKKRMISSSALE-KNFC 263
                   I   N +Y +    + I+ +    +       ++   K + +    E  +  
Sbjct: 286 IAVGHDLRIKMINPAYSRLAPGKEIIGKTFPEVWPEIPALRDVFLKVLETGEPYEVVDEP 345

Query: 264 ETVSTLEHG--NNKSY--KIVRVL----NSFGEAGIAIDVSKEITVNDQLTHTYE----I 311
             +S    G    + +   + RV       +G    A + ++     D L  + E     
Sbjct: 346 YHISRFPGGLLEKRYFSWSLFRVRLPGNEEWGLLNTAWETTERKRSEDALRVSEEKFRSF 405

Query: 312 LHNLTVAIAIFDQNRYLQF-------HNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
             +  V +        ++F        N +F  +       +   P      +     + 
Sbjct: 406 FEHAAVGM------GRVRFTDACWIDVNGAFCRMLGYSPDAMKATPWP----QITHPEDV 455

Query: 365 LPEQLNWKTWKENIFSVY--KSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENL 419
             + + ++         Y  +    HKD  H+     L + +  N  G     I + E++
Sbjct: 456 DMDLIPFRRMAVGELDTYSVEKRFIHKDGHHVW--ARLALSLVRNAEGLPDYEIAVIEDI 513

Query: 420 TVQVDLE-TKYNTLVKVQGE 438
           T +   E  +   L +VQ  
Sbjct: 514 TDRKRSEAERERLLSEVQRS 533



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 82/278 (29%), Gaps = 39/278 (14%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATN----------PSNDELLEFLRSANKLPEQLNWK 372
           D +  + F N  F E+   +                 P+  +L +F+ +           
Sbjct: 36  DADGMVDFVNDKFTEITGYEAGETVGRSLWSLQCQETPTCTDLEKFVLTRG--------- 86

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
            W   + +  K    + ++  +       V        G + + ++++     E +    
Sbjct: 87  DWHGEMVNRRKDGAPYWESVSIAV-----VRDRDGAISGYVAVKQDVSEGKQTEERLKAR 141

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                E       G   +  +      +         +++   P  +         + + 
Sbjct: 142 EAELSEAQRIARVGSWTWDAESDTVYWSEQTYRTCGFDQSVAPPSFY-----GGHGKLFP 196

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNAQTML-----TFVN 544
             D   L   I  +  D     Q  L++L   +   +        +A+  +     +  +
Sbjct: 197 PEDLARLTQCIDLALRD-GTPYQLDLQMLCPDTPRWITVRGEATRDAEGRIKGLRGSIQD 255

Query: 545 VTDSVRAERALTEKNEALRK-ADEIKNSFVQHVSYELR 581
           +T+  RAE  +  +   L      +  + +  V ++LR
Sbjct: 256 ITERKRAEEEIQCQRRLLESVIMNLPAAVLIAVGHDLR 293


>gi|325274858|ref|ZP_08140873.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324100006|gb|EGB97837.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 917

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 146/329 (44%), Gaps = 22/329 (6%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV------LE 527
           L     I +         N+     L   + T    E   L   +  +++++      L+
Sbjct: 189 LRMSRSINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELARGINRMAETLHNAHEELQ 248

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +SI    +  T     N+         L    +   +A  IK+ F+ ++S+E+R+PL  I
Sbjct: 249 HSI----DQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGI 304

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GFT LL+ S++     +Q  Y+  I  S+  LL ++N+ILD + ++AG + L+     L
Sbjct: 305 LGFTHLLQKSEM---TPRQLDYLSTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNL 361

Query: 648 NDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            DL+ +    +A   H   +  + ++      S V D  RL QI + ++SNA+ F+ +G 
Sbjct: 362 RDLIQDTLTILAPAAHAKQLELLSLVYRDTPTSLVGDPLRLKQILTNLVSNAIKFTREG- 420

Query: 707 TVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           T++++A       D+     SV++ G  +     +++F  F    +    Q  G GLGL 
Sbjct: 421 TIVVRAMLDDEHEDHAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLV 480

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +  I   GG + + S+    +     +
Sbjct: 481 ISKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|298241540|ref|ZP_06965347.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554594|gb|EFH88458.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 680

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/649 (18%), Positives = 230/649 (35%), Gaps = 58/649 (8%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
           +++     D     +   D  G I+  N    +     G    + IG++ +    E  + 
Sbjct: 38  LNILAAFLDLSPDALIVVDTTGMIVLVNT---QLEMLFGYGHDELIGQTIECLLPEHLRA 94

Query: 252 MISSSALEKNFCETVSTLEHG--------NNKSYKI------VRVLNSFGEAGIAIDVSK 297
              +             +  G        +   + +      +R+ ++    G   D++ 
Sbjct: 95  AHVAKRTHYMQAARPRLIGAGLDLVGRRKDGSQFPVEISLRPIRIEHTLHVMGAVRDITA 154

Query: 298 EITVNDQLTHTYEILHN-------LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +  V  +     + L            AI + D    +   N     L+      +    
Sbjct: 155 QREVERERMRILQRLRQQDKLISLAHDAILVRDAENRILSWNEGAEHLYRWTAQEVTGKV 214

Query: 351 SNDELL-EFLRSANKLPEQLNWKT-WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           S+  L   FL S   + + L     W+  +    +       T  +   + + V      
Sbjct: 215 SHTLLQTRFLISQEAVDQTLEQHGQWQGELIHTCRDG-----TQVIVESRQVLVRDEQGA 269

Query: 409 RGGTIWMFENLTVQVDLETKYNTL-------VKVQGETIDHLSEGVAVF-GPDGRIKLSN 460
               + +  ++T +  LE             + V    +D L  GV +  GP  R+ ++N
Sbjct: 270 PSAILEINRDVTERRRLEHLEQEARADMDARLHVLQSILDRLPNGVFLVQGPQLRLLMAN 329

Query: 461 PAFRSLWKTEENRLSPGTHI--RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            A  +LW  E  R  P      +      +         DL  A   +  +     Q  +
Sbjct: 330 DAAAALWGAEWPRGQPQEEFLQQQGIHLFNANGQPLPMDDLTGARAMASGEPVLYRQLGI 389

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDS----VRAERALTEKNEA---LRKADEIKNS 571
                + L   +  +P     L      +       AER +    +    L++A+ +K+ 
Sbjct: 390 RRPDGTRLPVVVDAIPFTNLSLLPRLPQEMTPALPSAERVVLVVYQDVSALKEAETLKDQ 449

Query: 572 FVQHVSYELRSPLTNIIGFTDLLK----TSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           F+   ++ELR+PLT + G+ D L       K   L+  Q + V+ +  +S  L +L  D+
Sbjct: 450 FISLATHELRTPLTIVAGYADRLLIRAARGKEHGLDEWQREKVQEMKQASWQLASLTEDL 509

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD+  + AG   L   +  L DL  +V Q +     ++  ++ V +         D  R+
Sbjct: 510 LDVTRMQAGQFALERRSTDLVDLTRKVIQRLQATTDKH--QLDVQAAPPQLWATVDTFRI 567

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            Q+ S +LSNA+ +S  G  + +      +  +  F +++ G  IP      +F RFV  
Sbjct: 568 EQVLSNLLSNAIKYSPGGGPIEVMLEEHAETHEARFRIRDQGMGIPRAQQAHLFGRFVRA 627

Query: 746 AHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +      RG GLGL +    I  HGGH+   S +   +T    +P  E
Sbjct: 628 ENARAAGIRGTGLGLYLCRELIERHGGHIDFESEEGVGSTFFFSLPCHE 676


>gi|307307210|ref|ZP_07586947.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|306910265|gb|EFN40697.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1629

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/658 (17%), Positives = 241/658 (36%), Gaps = 65/658 (9%)

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVW--HRDQAGDILWANISYKKNTETEGIVFQKAI 237
            E T +   L   +   + L D+++  +     D  G IL  N ++       G   ++ +
Sbjct: 478  EVTKRTNALQQALLENQTLLDTINQQLLYSATDPNGVILEVNDNF---CHVSGYSRKQLL 534

Query: 238  GESRKLFKEEIKKRMISSS-----ALEKNFCETV-STLEHGNNKSYKIV--RVLNSFGE- 288
            GE+  +            +         ++   + +   H   K +  V   V N  G  
Sbjct: 535  GETHAILNSGEHDAAFWRTMWTQIKSGLSWHGEICNRDRHQMLKWFDTVIGPVFNENGNI 594

Query: 289  ---AGIAIDVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELWE 340
                 +  D+++      +      +L N+  A     I   D+   +   NR   +L  
Sbjct: 595  ERFVALRTDITERKLAQIEKNKLGSLLTNVLDAASEMSIIATDKKGVITIFNRGAEQLLG 654

Query: 341  IDLAFL--ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS----SETHKDTWHL 394
                 +   + P+   L E + + +        +  +     VYK+    SET   T+  
Sbjct: 655  YAAVDMIGLSTPAPLHLPEEVAARSAELSSEYGEDIQGFDVFVYKARTLGSETRTWTYVR 714

Query: 395  PNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
             +     V ++            G + +  +++  +  +    T      +  +    G+
Sbjct: 715  KDTSQCQVSLSVTAMLDNVGEIIGYLGIAIDISQVLQQQKALITASNHLSKAAEVAKLGI 774

Query: 448  AVFGPDGRIKLSNPAFRSLWKT------------EENRLSPGTHIRNIAATCSRYYNESD 495
              +         N    +++                        I    A       E D
Sbjct: 775  WSWDLRDNSLEWNERMFAIYDHPLSLQDKGLTYEHWRMRIHSDDIDFAEAKLKAAIEEKD 834

Query: 496  GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +D    ++ + D   + +Q   ++  D   + + +       +   +++T+  + E  L
Sbjct: 835  QYDPIFRVVRT-DGTIRYVQAAAQIERDVTGQVTKV-------IGINLDITEQRQLEETL 886

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             E       A+  K++F+ ++S+E+R+P+  ++G   L++ +   S++ +Q  YV     
Sbjct: 887  REAKHEADAANAAKSAFLANMSHEIRTPMNAVLGMLQLMQHT---SMSVQQQDYVSKTQT 943

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++  LL L+NDILD + +DAG + L+     +  L+ ++   ++      N+ +    D 
Sbjct: 944  AAKSLLGLLNDILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNHGNKNVEVMFDLDP 1003

Query: 676  KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI 730
             L    +AD+ RL QI   +  NA+ F+  G   +    L+   +      S+ + G  I
Sbjct: 1004 ALPAWLLADQLRLQQILVNLAGNALKFTRHGQVTVAMECLRHEVNTVTVQISISDTGIGI 1063

Query: 731  PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             E+  + +F  F        RR  G GLGL+I +  + L GG ++++S     +    
Sbjct: 1064 SEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVTSRVGVGSRFWF 1121



 Score = 46.1 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 95/300 (31%), Gaps = 40/300 (13%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           A  +I + ++  V  +      +L +   AI  +D    +   N+   E++      +  
Sbjct: 329 AIWSISLQRKQQVQLEQARRASMLEHSLDAIISYDLTGNITSWNQGAEEIFGYTQTDVIG 388

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           + S D +   +  +  L EQ+ +      +FS  K+      T    NG  +    TS P
Sbjct: 389 HSSCDLI---IPPSIVLEEQVLF----AEVFS-GKTVLNQISTHQRQNGSHVSTSTTSLP 440

Query: 409 -------RGGTIWMFENLTVQVDLET---------------KYNTLVKVQGE---TIDHL 443
                    G      ++T Q + E                + N L +   E    +D +
Sbjct: 441 IYDEDSAIVGLSQTIRDITTQQEAERYILSLNARLEQEVTKRTNALQQALLENQTLLDTI 500

Query: 444 SEGVA--VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           ++ +      P+G I   N  F  +      +L   TH     A  +   +++  W    
Sbjct: 501 NQQLLYSATDPNGVILEVNDNFCHVSGYSRKQLLGETH-----AILNSGEHDAAFWRTMW 555

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             I S       +            +  I P+ N    +       +   ER L +  + 
Sbjct: 556 TQIKSGLSWHGEICNRDRHQMLKWFDTVIGPVFNENGNIERFVALRTDITERKLAQIEKN 615



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 43/302 (14%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANISYKKNT 226
           I     + +++ E  L   + +   S+   + D+  +  +   D+ G I   N   ++  
Sbjct: 594 IERFVALRTDITERKLAQIEKNKLGSLLTNVLDAASEMSIIATDKKGVITIFNRGAEQLL 653

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN-------FCETVSTLEHGNNKSYKI 279
               +        +     EE+  R    S+           F     TL         +
Sbjct: 654 GYAAVDMIGLSTPAPLHLPEEVAARSAELSSEYGEDIQGFDVFVYKARTLGSETRTWTYV 713

Query: 280 VR-----------------VLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVA 318
            +                 V    G  GIAID+S+ +     L     H  +      + 
Sbjct: 714 RKDTSQCQVSLSVTAMLDNVGEIIGYLGIAIDISQVLQQQKALITASNHLSKAAEVAKLG 773

Query: 319 IAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           I  +D ++  L+  N     +++  L+      + +     + S     + +++   K  
Sbjct: 774 IWSWDLRDNSLE-WNERMFAIYDHPLSLQDKGLTYEHWRMRIHS-----DDIDFAEAKLK 827

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLETKYN 430
                K            +G   +V   +             I +  ++T Q  LE    
Sbjct: 828 AAIEEKDQYDPIFRVVRTDGTIRYVQAAAQIERDVTGQVTKVIGINLDITEQRQLEETLR 887

Query: 431 TL 432
             
Sbjct: 888 EA 889


>gi|322804610|emb|CBZ02162.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 615

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 173/391 (44%), Gaps = 16/391 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + +  N   Q +++ +    + ++ E      I +  + + V    G+I  +N   + + 
Sbjct: 198 VNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILV-HRYGKIIFANERLKQML 256

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLF---AAIITSFDDERKSLQGTLELLSDS 524
             ++        I+++         ++   +L+     ++    +   + + T++  S  
Sbjct: 257 GYKKEYNFEDIDIKSLIPKDEYNTVKNKLENLYYGSENVVNFQHNVINNKEKTIQNTSTY 316

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELR 581
           V+ Y  +P   +  +    +     + E+ + +  E L +    +++   F+ ++S+EL+
Sbjct: 317 VI-YDGMPTIFS-ILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHELK 374

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I     LL   +      KQ +Y++ I  +   L+ L+N++LD   +D+G ++LN
Sbjct: 375 TPLNVIFTAVQLLDFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLRLN 434

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +  L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSNA+ F
Sbjct: 435 LVNYNIVSLIEEITLSVTSYAESKGINIIFDTEMEERVIAVDTDKIERIILNLLSNAIKF 494

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           ++ G  + +       +    +K+ G  IP D  +S+F RF          + G G+GL 
Sbjct: 495 TNPGGNIFVNIKDSEENVYVHIKDTGVGIPSDKLESIFERFFQIDKTLKKNKEGTGIGLH 554

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +V+SF+ +H G V+I+S     T    ++P+
Sbjct: 555 LVKSFVEMHNGTVTINSELGKGTEFIIKLPA 585


>gi|168333377|ref|ZP_02691657.1| multi-sensor signal transduction histidine kinase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 681

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/511 (19%), Positives = 219/511 (42%), Gaps = 32/511 (6%)

Query: 293 IDVSKEITVNDQLTHTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           IDV++       L ++Y++    L+++   +A  D++  +   NR+     +    +   
Sbjct: 160 IDVTERAKKEMDLQNSYDLDELLLNSIETKVAAVDKDGKVIALNRAMQMSLKNKQEY--- 216

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTW---KENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +P  +++   LR    +     W+     ++N+   +K+     ++W+L + Q       
Sbjct: 217 HPDLEDIC--LRDIKII--NNMWRVLTQNEKNLLFKHKTKFLSDESWNLISIQG------ 266

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S    G I  + ++T    L+       ++    ++ L  GV    P   I   N  F  
Sbjct: 267 SFSSIGAIIAYTDITESERLDMSIRKNEQMYHAVLERLPIGVVATNPKEGITFYNEEFAR 326

Query: 466 LWKTE-ENRLSPGTHIRNIAATCSRYYNE---SDGWDLFAAIITSFDDERKSLQGTLELL 521
           L K   +  L     +  I     R + +   S   + F +I  +  D+  +       +
Sbjct: 327 LLKLSSQTDLLGKNLLSYIRQDKKRKFIDTFFSLSPEKFKSITQTMLDKEGTEIEVKIDM 386

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           + ++L+  +  + + + +   +N+       +   ++ E   +  + +  +  ++S++LR
Sbjct: 387 TKAILDNKLTDIFSIRDIRDELNIKKF----KERLDQKEKQIETAKYQTEYFANISHDLR 442

Query: 582 SPLTNIIGFTDL--LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +P+  I     L  L+  +    N    +Y E I  + T LL LVN+++D+  +++G   
Sbjct: 443 APINVISSAAQLMSLRDVQRDFDNGTIDKYSEIIKQNCTRLLKLVNNVIDMNKIESGFYI 502

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           ++ S + + +L+ E+  SI +     NI +   ++ +      D   + +I   +LSNA+
Sbjct: 503 MHISKVNIVNLVEELTLSIRSYTEAKNIELIFDTEIEECIVEIDIDSMERIILNLLSNAV 562

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G  + ++  +D  + I SVK+ G  I  D    +F RF     +  ++  G G+G
Sbjct: 563 KFTPNGGKIDVRIYQDFPNVIISVKDTGRGIEADKLDIIFERFKQARTKKDKKEQGSGIG 622

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LS+V+S + L GG V ++S     +     +
Sbjct: 623 LSLVKSLVELQGGLVDVTSVVGEGSEFKVIL 653



 Score = 42.2 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 99/292 (33%), Gaps = 38/292 (13%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++ E   K   L N   + ++L +S++  V   D+ G ++  N + + + + +       
Sbjct: 161 DVTERAKKEMDLQNSYDLDELLLNSIETKVAAVDKDGKVIALNRAMQMSLKNKQEYHPDL 220

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI--- 293
                +  K       + +   +    +  +        S+ ++ +  SF   G  I   
Sbjct: 221 EDICLRDIKIINNMWRVLTQNEKNLLFKHKTKFLSDE--SWNLISIQGSFSSIGAIIAYT 278

Query: 294 DVSKEITV----NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--LAFLA 347
           D+++   +           + +L  L + +   +    + F+N  F  L ++      L 
Sbjct: 279 DITESERLDMSIRKNEQMYHAVLERLPIGVVATNPKEGITFYNEEFARLLKLSSQTDLLG 338

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTS 406
            N     LL ++R   K       + + +  FS+  +  ++   T     G  + V +  
Sbjct: 339 KN-----LLSYIRQDKK-------RKFIDTFFSLSPEKFKSITQTMLDKEGTEIEVKIDM 386

Query: 407 NPRG-----GTIWMFENLT---------VQVDLETKYNTLVKVQGETIDHLS 444
                      I+   ++           ++D + K     K Q E   ++S
Sbjct: 387 TKAILDNKLTDIFSIRDIRDELNIKKFKERLDQKEKQIETAKYQTEYFANIS 438


>gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 919

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q+ YVE I++
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDRGQAAYVETIAS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S + L++++NDILD A +++G + L      L +LL++     + +  E  + + +  D 
Sbjct: 452 SGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHLGLDR 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSI 730
           G       D  RL Q+   +LSNA+ F+++G   V ++   D G     ++SV ++G  I
Sbjct: 512 GVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +
Sbjct: 572 SAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDL 631

Query: 789 PS 790
           P 
Sbjct: 632 PL 633


>gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1135

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 3/243 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
               + L  KN AL++ D++KN F+ + S+EL++PL  IIG  + L     G L+   S 
Sbjct: 414 QEYNQKLETKNAALQEMDQLKNEFLANTSHELKTPLNGIIGIAESLIDGATGELSQPTSS 473

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I +S   L  LVND+LD + +    + L    + + ++   V       +    ++
Sbjct: 474 NLSLIVSSGKRLTQLVNDLLDFSALKHKQINLRIKPVGMREITEVVLLLSRPLVGNKKLQ 533

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +       +    AD  RL QI   ++ NA+ F+ +G T+ + A   N     +V + G 
Sbjct: 534 LINQVSSSIPPVDADENRLQQILYNLVGNAIKFTERG-TIKVSAEVVNYYLKITVSDTGI 592

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D    +F  F         +  GVGLGL++ +  + LHGG + + S+    +  + 
Sbjct: 593 GIPPDKLDRIFEAFEQGDGSINRKYGGVGLGLAVTKKLVQLHGGDIDVESTPNLGSRFSF 652

Query: 787 RIP 789
            +P
Sbjct: 653 TLP 655


>gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1133

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 12/248 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L  +N+ L + D +K+ F+ + S+ELR+PL  IIG  + L      +LNS  +  +  
Sbjct: 430 ETLEAQNKQLTELDRLKDEFLANTSHELRTPLNGIIGIGEFLLEENTKNLNSITTSNLAI 489

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKV 671
           I +S+  L NLVNDILD + +    ++L    I +  ++  V       +    N+++  
Sbjct: 490 IVSSARRLSNLVNDILDFSKIRYHKLELQVRAIDVRIVVESVITLNRVLVGKNKNLQLTN 549

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------RDNGDFIFSV 723
                L   +AD  RL QI   +++NA+ F+  G  V + A+         +  + I  V
Sbjct: 550 AIPTDLPPVLADENRLQQILYNLIANAIKFTESG-KVEISASLYSPKEDQDEATEIIIMV 608

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP D    +F  F         +  G GLGL++ +  + L GG + + S     
Sbjct: 609 SDTGIGIPPDQLDRIFESFEQGEGSIIRKYGGTGLGLAVTKELVELQGGRIWVESEVGVG 668

Query: 782 TTINCRIP 789
           +  N  +P
Sbjct: 669 SRFNVTLP 676


>gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71848542|gb|AAZ48038.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 845

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 7/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  E   +A   K++F+  +S+ELR+PL  I+GF +LLK       N    +Y   
Sbjct: 604 KRLDDAREKAEEASRQKSAFLATMSHELRTPLNGILGFAELLK---YELDNPSHQEYATV 660

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
           I  S   LLNLVN+ILDLA ++AG M        L  L++E             +   + 
Sbjct: 661 IQQSGEHLLNLVNEILDLAKIEAGEMLFKRVPTPLAGLVSECVAGHQVTATAKGLGFDLN 720

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +++G     V D  RL QI + +LSNA+ F+ +G  + L       +  F+V + G+ IP
Sbjct: 721 VAEGLPEQLVTDPLRLRQILNNLLSNAVKFTEQG-KISLTVRPAGQEIAFAVSDTGAGIP 779

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    VF +F         +  G GLGLS+V       GG V++ S+    +T    +P
Sbjct: 780 PESLDMVFEKFKQLESFLTREHGGTGLGLSLVRQLAEHMGGRVTLESAVGVGSTFTVYLP 839


>gi|189347557|ref|YP_001944086.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341704|gb|ACD91107.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 990

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/508 (20%), Positives = 199/508 (39%), Gaps = 41/508 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             +++ +       +L N    I   D    + + NR           F  ++ S  E L
Sbjct: 75  ALVSLRESENTLSTVLVNSPDTIIAVDIRHRIIYFNR----------DFPLSHRSLQEGL 124

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNP------ 408
                   +P   +   +   I +V++S   H  +      +G T+ V     P      
Sbjct: 125 HLCDC--IVPSSHD--EYHRAIEAVFRSGHAHSLESLISQGDGGTVEVESKLGPCFINGT 180

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            G  + +  ++T +  +E +    +               + G + R          L  
Sbjct: 181 VGSVVILVSDITERKRMERELKRSLDELERF------NRVMVGREMRSIELKAELDRLRG 234

Query: 469 TEENRLSPGTHI-RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              +    G  + R   ++CS     + G+  +     +  DE         +       
Sbjct: 235 GLASDDLAGMDVNRKQVSSCSLNSMPAAGFSDWLCPAENIQDELSEEPEGDCMFKSRQRS 294

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             +  + +A      +  T+    E  R   E  ++ R+A+E K+ F+ ++S+E+R+P+ 
Sbjct: 295 ALLNLVEDADLARNQLIETNMKLGESVRKTEEMAKSAREANEAKSRFLANMSHEIRTPMN 354

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IG +D+L  +   SL+ +Q +YVE I +S   LL ++NDILD + ++A  ++L++   
Sbjct: 355 GVIGMSDILLDT---SLDIEQRKYVETIISSGKNLLKIINDILDFSKIEANRLELDHIDF 411

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L DLL +V   +  + +E  + +   +   L      D  RL QI   ++SNA+ F+ +
Sbjct: 412 NLIDLLEDVGTLLGFEAYEKELELVFRTGPTLPLRLKGDPARLRQILVNLVSNAIKFTHE 471

Query: 705 GSTVI--LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGL 758
           G  V+  +     +   +  F+V + G  I E+   S+F  FV        +  G GLGL
Sbjct: 472 GEVVLDAVLERETSEQVVIGFTVSDTGIGIEEERKGSIFEPFVQADGTTIRKYGGTGLGL 531

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINC 786
           SI        G  +++ S     +    
Sbjct: 532 SISSHLAEKMGSGITVQSRIGTGSVFRF 559


>gi|307155247|ref|YP_003890631.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985475|gb|ADN17356.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 762

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 13/292 (4%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRK 564
           +R+ L+   E L   + E+  I +  A                       L       + 
Sbjct: 323 KRQWLETEKEFL-GHIGEHLAIAIQQALLYKQVQEQKQFFEKRVFECTEELRSSIAVAQS 381

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---SKLGSLNSKQSQYVEYISASSTILL 621
           A   K+ F+ ++S+EL +PLT +IG    L      +      KQ +Y+E I  +   L+
Sbjct: 382 AHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQRKYIESIQKNGKKLM 441

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGS 679
           +L+NDILD +++ +G  +LN     L  ++N V +  A++  + +I + +      +   
Sbjct: 442 DLINDILDYSSITSGDYQLNIHEFSLYSVVNSVLRDFASEAQKKSIDLILDFQVQKEEND 501

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F ADR+R+ QI S ++SNA+ F+     V L+  R+     F V++ G  I ++    +F
Sbjct: 502 FYADRERIKQILSHLISNAIKFTPDQGKVTLRIWREKSQVFFQVEDTGIGISQEQLPLLF 561

Query: 740 NRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F     A +    G GLGL++ +  + LH G + + S+ E  +    RIP
Sbjct: 562 EKFQQLEKARQRTHGGTGLGLALTKQLVELHRGTIEVESTPEQGSLFTVRIP 613


>gi|189424899|ref|YP_001952076.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421158|gb|ACD95556.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 641

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 153/347 (44%), Gaps = 27/347 (7%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFD-----DERKSLQG 516
           F  L+      +  G ++ +I+   S   ++      L   +IT+F        +K LQ 
Sbjct: 165 FVKLFVPWGWVIGSGMYLDDISEEVSSLRHKVYLIVGLVLVLITAFSLIVAVRIKKPLQQ 224

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSF 572
            LELL +   +Y  +     Q++         +RA      AL    E    A   K +F
Sbjct: 225 ALELLQEIPEQYRPV-----QSVTALDESNRLLRAMVNLVTALKAAKEQAEAASSAKGAF 279

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  I G T+L       + +++Q + +E IS ++  LL+L+N +LD + 
Sbjct: 280 LAQMSHEIRTPMNAISGLTELALDQ---APSAQQRELLEGISHAANHLLSLINQVLDFSK 336

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIF 691
           ++AGI++L      L   L       + ++    +R + +    L +  + D  RL Q+ 
Sbjct: 337 LEAGIVELEQIPFNLRQTLTATLLPFSVRVRSKGVRFETVLADNLPTRVIGDPTRLRQVL 396

Query: 692 SKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
             ++ NA+ F+ +G  + +   +        +    V++ G  IP++    +F  +   A
Sbjct: 397 VNLVGNAVKFTRQG-CIEIDVEKGEQTGNHCELRIMVRDTGIGIPQEKIAQIFAPYSQAA 455

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               R   G GLGLSIV+  + +  G +++ S     T  +  +P +
Sbjct: 456 ASTTREFGGTGLGLSIVKQLLEVMQGTITVESQPGAGTCFSVSVPVE 502


>gi|281209484|gb|EFA83652.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1067

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 155/359 (43%), Gaps = 27/359 (7%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++ ++G+ ++ P+G IK  N +           +        +    S   +  +    
Sbjct: 314 VEYNNDGIEIWDPNGHIKYLNYSTADSIGYSRWEI--------LGKEFSFLIDNQEIIPQ 365

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL---- 555
             A IT        ++      +    E S+ P+ + Q  L + N +     ++ +    
Sbjct: 366 MWATITGGKPWNGYIRTKHANGALVYFESSVSPVYDTQQKLIYYNCSKRDATQKRIDEEF 425

Query: 556 -TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            T++ E   +   ++   +  +S+++R+P++ IIG TDLL  ++   L+ +Q  Y++ I 
Sbjct: 426 RTQEQERTIETSRLR---LSMMSHDIRTPMSGIIGMTDLLAETE---LHPQQRHYLDIIR 479

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ASS  LLN++ND+LD++ ++AG +++        + + +V + +  +     + +     
Sbjct: 480 ASSNTLLNIINDLLDISKIEAGKLEIENREFDFRETVEDVCELMGERAQAKALSLMCFVH 539

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729
             +    + D  RL QI + +L N++ F+  G  +++      + D       VK+ G  
Sbjct: 540 PTVPQNLIGDSSRLKQILNNLLGNSVKFTDNGEILVVCNVANVSEDIVALRIEVKDTGIG 599

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL-HGGHVSISSSDEGVTTIN 785
           I ++    +F  F         Q  G GLGL+I +   NL   G + + S     +T  
Sbjct: 600 IKKEALPLLFKAFTQAEGSIARQYAGSGLGLAICKELANLAFNGDIGVESQYGVGSTFW 658


>gi|297568711|ref|YP_003690055.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924626|gb|ADH85436.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 510

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 136/276 (49%), Gaps = 7/276 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           ++ ++L ++++   ++      V   +     R L +  E    A+  K+ F+ ++S+EL
Sbjct: 221 INSAMLYWALLEERDSLEEKVQVRTRELEAQSRLLQQAKETAESANRAKSRFLANMSHEL 280

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIG+++LL          + S+ +E I ++   LL L++DILD++ ++AG + L
Sbjct: 281 RTPLNAIIGYSELLLEDASEWGEWEISEDLEKIKSAGQHLLMLISDILDISKIEAGRLDL 340

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +   +    LLN+V  +I   + +NN R++V +  +  +   D  +L Q+   +LSNA  
Sbjct: 341 HLEEVQWEPLLNDVVNTIRPLVVKNNNRLQVDTPPEEITLFTDATKLRQVLYNLLSNATK 400

Query: 701 FSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           F++ G  ++LKA+    R      F+V ++G  + E+    +F  F        R   G 
Sbjct: 401 FTTDGE-IMLKASLCRLRRQPRLEFAVSDSGIGMSEEQLAKIFQPFTQADSSTTRKYGGT 459

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL I   F  + GG +  +S      T    +P 
Sbjct: 460 GLGLVISRYFCRMMGGDIKATSRPGAGATFTVSLPL 495


>gi|116051482|ref|YP_789685.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 918

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q+ YVE I++
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDRGQAAYVETIAS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D 
Sbjct: 452 SGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDR 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSI 730
           G       D  RL Q+   +LSNA+ F+++G   V ++   D G     ++SV ++G  I
Sbjct: 512 GVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +
Sbjct: 572 SAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDL 631

Query: 789 PS 790
           P 
Sbjct: 632 PL 633


>gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 918

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q+ YVE I++
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDRGQAAYVETIAS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D 
Sbjct: 452 SGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDR 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSI 730
           G       D  RL Q+   +LSNA+ F+++G   V ++   D G     ++SV ++G  I
Sbjct: 512 GVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +
Sbjct: 572 SAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDL 631

Query: 789 PS 790
           P 
Sbjct: 632 PL 633


>gi|312960833|ref|ZP_07775338.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
 gi|311284491|gb|EFQ63067.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
          Length = 1165

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/366 (23%), Positives = 167/366 (45%), Gaps = 14/366 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
             TL +   E ++ ++         G I  S  A R   + +E           +     
Sbjct: 365 LRTLQERDVELLELIA---------GNIGTSIEAARYRQRLQEVLAETQQLNEELQVQQE 415

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + I+       ++ Q  LE  ++ + E +       Q         + 
Sbjct: 416 ELKTANEELEEQSRILKESQAHLETQQAELEQTNEQLAEQTQTLAE--QRDAMDRKNGEL 473

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A++ L ++ E L+++ + K+ F+ ++S+ELR+PL + +    LL  +   +L+++Q +
Sbjct: 474 NQAQQELEDRAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVK 533

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD++ V+AG +++      +  L++ ++        +  + 
Sbjct: 534 FAESIYSAGNDLLNLINDILDISKVEAGKLEVRPDNSSVARLVDGLRGMFEPLAADRKLG 593

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +V       + +  DRQRL QI   +LSNA+ F+ +G   +  +        FSV+++G
Sbjct: 594 FQVQVQPDAPAMLFTDRQRLEQILKNLLSNAIKFTEQGEVSLSVSRAPGEGIAFSVRDSG 653

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  +S+F  F        RR  G GLGLSI      L GG++S++S+    +T  
Sbjct: 654 IGIAPDQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGYISVTSAPGKGSTFT 713

Query: 786 CRIPSK 791
             +P +
Sbjct: 714 LVLPEQ 719


>gi|254444627|ref|ZP_05058103.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258935|gb|EDY83243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 561

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 4/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L    E   + +  K+ F+ ++S+ELRSPL  +IGF+DL++         +  +Y
Sbjct: 176 RYREELISAKEMAERTNAYKSEFLANMSHELRSPLNCVIGFSDLIEQDVEEKCFERIGEY 235

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I A+   LL ++ +ILDLA +D G M+L    + L++LL  +   +     E  + I
Sbjct: 236 AGLIKAAGKHLLGMITEILDLARIDTGKMRLEKREVHLDELLELIASMLKLPAREKRLSI 295

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  D     F AD +RL Q+   +LSNA+ FSS+GS + + A          V + G  
Sbjct: 296 ELDCDP--IRFEADERRLHQVLHNLLSNAIKFSSEGSRIGVSAQGQGEIVEIVVWDEGRG 353

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F  F            G GLGL+IV+  ++LHGG VS+ S     +  + R
Sbjct: 354 IAPDWLDRIFEPFEQVESGDSELGEGAGLGLAIVKRIVDLHGGQVSVESELGVGSRFSVR 413

Query: 788 IPS 790
           +P+
Sbjct: 414 LPA 416


>gi|298251303|ref|ZP_06975106.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297545895|gb|EFH79763.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 744

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/633 (16%), Positives = 241/633 (38%), Gaps = 63/633 (9%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI-----SYKKNTETEGIVFQKAIGE 239
              L     + + + D +   +      G +L  N      +  +  +  G     A   
Sbjct: 127 QDALFQSEQLRQAIADGVPAGIAILTADGIVLEINKVPLENAQVQLEDVVGKPLADAPWW 186

Query: 240 SRKLFKEEIKKRMISSSALEK--NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA----- 292
           +     ++     ++ +   +   F   V   + G  +  ++    +      +      
Sbjct: 187 ASSSAMQQRLHDAVAQAGKGEVVRFDARVYPKKVGERE-LEVTITPHLNANQEVTYLLYT 245

Query: 293 -IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
             DV++      +L    E    +   + +   +   ++HN+ + +          +   
Sbjct: 246 GFDVTERKRAEAELRFLAET---IPQFVWVARADGLSEYHNQRWYDYTNTTPEQGFS--- 299

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNP 408
            D  ++F+   ++   Q   + W  ++    ++   ++  +   NG+T      +  + P
Sbjct: 300 -DRWVQFVHPEDR---QRVLEAWYTSV----QTGTPYEAEFRFRNGRTGEYRWFLARAMP 351

Query: 409 ----RGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
               +G  +     F ++  +   ET+           +D    G+A+    G I  +N 
Sbjct: 352 FKDEQGNIVRWFGTFTDIHDKKQTETRLRLSEARYQRLLDSNIIGLALGDIYGHIYEANE 411

Query: 462 AFRSLWKTEENRLSPG-THIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLE 519
           AF  +    +  +  G      I     RY +E    +L    +   F+ E +   G+  
Sbjct: 412 AFARMIGYTQEEVRAGLIRWDTITPPEYRYLDEKALKELQELGVCHPFEKEYQRKDGSRV 471

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            +   ++  + +   + + +   V++++    E+               K+ FV   S+E
Sbjct: 472 PV---IVGAARLAEADGKIISFIVDISERKELEKR--------------KDEFVSLASHE 514

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++PLT +      L+           ++ +  + A  T L  L+ND+LD++ +  G   
Sbjct: 515 LKTPLTALKMLLYQLRKKSKQEEYQDVTRILSRMEAQVTTLTQLINDLLDVSKIQMGRFD 574

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
                I L+ ++ EV +++        +R+           VAD++RL Q+F+ I+SNA+
Sbjct: 575 YADEPIDLDTVIQEVVETLQQTTTTQTLRLH---GAVHQCIVADKRRLAQVFTNIISNAI 631

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGL 756
            +S +  +V +  +      +  V++ G  IPE++  +VF RF   ++    +   G+G+
Sbjct: 632 KYSPQADSVDIWVSASQNTAVIRVQDYGVGIPEELQSTVFERFNRGSYGASEKVFPGLGM 691

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL I +  +  +GG +++ S++   TT    +P
Sbjct: 692 GLYIAKEIVKHYGGTITVESAEGRGTTFTVSLP 724



 Score = 54.2 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 85/272 (31%), Gaps = 32/272 (11%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL-AFLATNPSNDELLEFLRSANKL 365
               IL  L  A+ + DQ   + + N +   +      AFL  N                
Sbjct: 17  RVIHILDLLPDALLMVDQENTIFYANATAEAMAGATRGAFLGKNIW---------QCPNT 67

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
           P  +N   +     +    +    +          HV +     G  +  F   T+   L
Sbjct: 68  PRVINAPLYNTFFQATQTHTPLQVEYVSPLTHTWRHVHIAPTAEGAMV-HFHETTLYTML 126

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-----AFRSLWKTEENRLSPGTHI 480
           +       +++    D +  G+A+   DG +   N      A   L       L+     
Sbjct: 127 QDALFQSEQLRQAIADGVPAGIAILTADGIVLEINKVPLENAQVQLEDVVGKPLADAPWW 186

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQT 538
            + +A   R ++         A+  +   E       +  + + +  LE +I P  NA  
Sbjct: 187 ASSSAMQQRLHD---------AVAQAGKGEVVRFDARVYPKKVGERELEVTITPHLNANQ 237

Query: 539 -----MLTFVNVTDSVRAERALTEKNEALRKA 565
                + T  +VT+  RAE  L    E + + 
Sbjct: 238 EVTYLLYTGFDVTERKRAEAELRFLAETIPQF 269


>gi|266622910|ref|ZP_06115845.1| putative His Kinase A domain protein [Clostridium hathewayi DSM
           13479]
 gi|288865336|gb|EFC97634.1| putative His Kinase A domain protein [Clostridium hathewayi DSM
           13479]
          Length = 614

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/524 (20%), Positives = 196/524 (37%), Gaps = 39/524 (7%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNL---TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
            A + S   TV     +    L NL   +V+  + D++  L + N  + +L         
Sbjct: 8   YAAECSSRETVTADYEYH--TLMNLLKVSVSKHLLDESFTLVWANEFYYDLIGWPKEEYE 65

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL------PNGQTLH 401
            N           +   L  Q + + W E   +V  + E H+  + L       NG  + 
Sbjct: 66  AN---------FHNRPDLYYQNDQQLWAELAGTVMAALEAHESGYQLVTQMRKKNGDFVW 116

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPDGRIK 457
           V +T+      I  ++     +    K   + K Q  T + L   VA +      +  + 
Sbjct: 117 VHLTTQFADEYINGYQVAYSVMTNIDKLVKMQKEQSVTYESLPGFVAKYRIDADMNLTLL 176

Query: 458 LSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII--TSFDDERKSL 514
            +N  F   +   +E+      +I +     SRY  E         +I   S D +   L
Sbjct: 177 FANSRFVEYFGEGDEDNPLYLRNIEDNREIISRYREEILKGAPVHFVISARSRDGQNMWL 236

Query: 515 Q--GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           Q   T     +    Y  I +                    AL +       A++ K  F
Sbjct: 237 QVNATCIEWQNGCPVYLAIFIDITDVTQLREMQRKLTEQTEALKDALAVAEHANQAKTDF 296

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  I+G T +   +       +    +E I  SS  L+ L+ND+LD++ 
Sbjct: 297 LSRMSHEIRTPMNAILGMTTI--AAAYIDDQRRVEDCLEKIGYSSKHLMALINDVLDMSK 354

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIF 691
           +  G +++ +    L  ++  +   I  +     +  +V + D      + D  RL QI 
Sbjct: 355 ISEGKVRIAHEVFDLETVVESISSIIYPQAAARGLTFQVPLIDLSNTVMIGDSLRLNQIL 414

Query: 692 SKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
             +LSNA+ F+  G TV L+        D     F+V + G  + +   + +F  F    
Sbjct: 415 LNLLSNALKFTPAGGTVRLEIRQLQRKEDRIRLRFTVLDTGIGMSDAFLERLFVPFEQED 474

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +R      G GLG+ I ++ + L GG +++ S     T     +
Sbjct: 475 NRVAQNSGGTGLGMPITKNLVTLMGGTITVKSEVGKGTVFTIEL 518


>gi|265750529|ref|ZP_06086592.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263237425|gb|EEZ22875.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 1045

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 135/246 (54%), Gaps = 6/246 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +    E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L T        +
Sbjct: 663 NERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAT---AEEEQE 719

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +Y+  I +++T+LL L++DILDL+ ++AG +  +YS + LND+L+E++  +  +   +
Sbjct: 720 KQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETS 779

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I++             ++ RL+Q+ + +L+NA  F+S+GS +         +  F VK+
Sbjct: 780 GIQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYELCGRELYFYVKD 838

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T  
Sbjct: 839 TGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFW 896

Query: 786 CRIPSK 791
             IP +
Sbjct: 897 FTIPYQ 902


>gi|237727241|ref|ZP_04557722.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229434097|gb|EEO44174.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 1045

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 135/246 (54%), Gaps = 6/246 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +    E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L T        +
Sbjct: 663 NERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAT---AEEEQE 719

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +Y+  I +++T+LL L++DILDL+ ++AG +  +YS + LND+L+E++  +  +   +
Sbjct: 720 KQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETS 779

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I++             ++ RL+Q+ + +L+NA  F+S+GS +         +  F VK+
Sbjct: 780 GIQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYELCGRELYFYVKD 838

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T  
Sbjct: 839 TGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFW 896

Query: 786 CRIPSK 791
             IP +
Sbjct: 897 FTIPYQ 902


>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 1102

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 19/279 (6%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK-------ADEIKNSFVQHVSYEL 580
           Y +I   +           +   + + L    E   +       A+  K  F+ ++S+E+
Sbjct: 381 YRMIEERDQAIQEILDAKQELEFSNQQLENLVEGANQLAVEAELANMAKGVFLANMSHEI 440

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  +IG  +LL  ++   LNS+Q++YVE I++S+  LL ++NDILD + +DA  + L
Sbjct: 441 RTPMNGVIGMGELLMETR---LNSEQTEYVERINSSAQALLRVINDILDYSKIDADKLDL 497

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
                 L + +  V   I+    E  +    +    +  ++  D  RL QI   +  NA+
Sbjct: 498 EVIEFNLRNTVEGVADVISVPAEEKGVEAACLIHHDVPLWLKGDPGRLRQILMNLSGNAV 557

Query: 700 DFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
            F+ KG  VI +    ++ +     F V+++G  IP D+ K++F  F        R   G
Sbjct: 558 KFTEKGEVVIRVSLDSEDEETAVIRFEVRDSGIGIPPDVQKTLFTPFTQADSSTTRKHGG 617

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IPS 790
            GLGL+I +    L GG + ++S +   +T      +P 
Sbjct: 618 TGLGLAISKKLSELMGGEIGLTSEEGKGSTFWFTAVLPK 656


>gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2450

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 121/272 (44%), Gaps = 18/272 (6%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              Q         +   A  +L EK E L    + K+ F+ ++S+ELR+PL +++    LL
Sbjct: 1704 EEQNTRVEEKNAEVELARSSLEEKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLL 1763

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +K G+L+ KQ +Y   I AS   LL+L+N+ILDL+ V+AG M++    IVL +L   V
Sbjct: 1764 ADNKDGNLSGKQVEYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFV 1823

Query: 655  KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +S      + N+   V            D QRL Q+   +LSNA  F+ +G  V L   
Sbjct: 1824 DRSFRPVAEQKNLSFDVELLANAPRQIRTDPQRLQQVLKNLLSNAFKFTDEGG-VQLVVK 1882

Query: 714  RDNGDFIFS--------------VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
              +    F               V + G  I +D  K +F  F         +  G GLG
Sbjct: 1883 LADKGVRFEHEVLKRAKRVIAFVVTDTGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLG 1942

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LSI      L GG + + S+    +T    +P
Sbjct: 1943 LSISREIAKLLGGEIHVESTLGKGSTFTLFLP 1974


>gi|220903475|ref|YP_002478787.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867774|gb|ACL48109.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 666

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/514 (18%), Positives = 187/514 (36%), Gaps = 27/514 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAI-AI-FDQ--NRYLQFHNRSFVELWEIDLAFLATNPS 351
                 +++L+   E +   +V + AI +D    R   F N +   L  +         +
Sbjct: 3   EARRIFDEELSWGREAMAAASVGLWAISYDTRTERTAMFTNEAMRRLLGVPEGL--DPEA 60

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD----TWHLPNGQTLHVIVTSN 407
                     +  LP   +     ++  S+ +    +        H+  G    V    +
Sbjct: 61  CAAFWLRHVDSRDLPLIRDSLAAFKDDASMREIRYAYCHPGMGAMHVRCGGR-RVSSADD 119

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKL-SNPAFRS 465
           P        ++++            +            GV   G  +GR +   N  F  
Sbjct: 120 PVLRITGFHQDISELHAAHNALRESLSRLSLACRLGWLGVFELGRKNGRPEFSCNEVFYE 179

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDS 524
            +   E+  +    +           +              F +  +  +      L   
Sbjct: 180 QFGLRESADAAERLVAVEKCILPEDRHRWRNLCRAEGWTLGFQEHVELRVSHPWRGLCWF 239

Query: 525 VLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           V+ Y ++   +   +  +  +VT   + E  L E  E+   A+  K+ F+ ++S+E+R+P
Sbjct: 240 VVAYEVVGTQDEPRITGYVHDVTKQRQHECMLREAKESAEAANAAKSIFLANMSHEIRTP 299

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   L+  +    L+ +Q  YVE I ++   LL+++ND+LD + ++A  M L   
Sbjct: 300 MNGIMGMAHLVLNT---DLSPQQRDYVEKIHSTCESLLDIINDLLDFSKIEANHMDLEAL 356

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
                + +  V   +  +    N  ++   D  +  + V D  RL QI   +  NA+ FS
Sbjct: 357 PFQPVNEMEAVLALLRPRTQHKNCVLESHIDPDIPQTLVGDALRLRQILLNLGGNAIKFS 416

Query: 703 SKGSTVILKAA---RDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
            +G  V +      R+      +  V + G  + E+  + +F  F        RR  G G
Sbjct: 417 ERG-VVRVDLQLLHREGNSVTLACLVSDEGIGMSEEEQERIFTPFSQADTSITRRFGGTG 475

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL++    + L GG + + S+    +     +P
Sbjct: 476 LGLALCRRLVELMGGRIHVQSAPGKGSVFRVELP 509


>gi|298486447|ref|ZP_07004507.1| Sensory box histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158924|gb|EFH99984.1| Sensory box histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 523

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 8/370 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIR 481
           + E       +     I+ + + G+     +G +   N     +    E   +     + 
Sbjct: 4   ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVF 63

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   C ++ + +          T  +  R+   G+    S  +                
Sbjct: 64  YLPEECPQHPDMALREATVNGRYTE-ESWRRRKDGSRFWASVVITAQYDGNDELRGFSKI 122

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S
Sbjct: 123 TRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS 182

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++  
Sbjct: 183 ----QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPM 238

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + NI +K +         VADRQRL+Q+   +LSNA+ ++     V ++  + +    
Sbjct: 239 AADANIELKALPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVT 298

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++   
Sbjct: 299 VSVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAE 358

Query: 781 VTTINCRIPS 790
                  +P 
Sbjct: 359 GCRFILELPL 368


>gi|257458984|ref|ZP_05624103.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
 gi|257443369|gb|EEV18493.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
          Length = 1517

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 144/324 (44%), Gaps = 14/324 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +RN+      +   +        I          L   L  + D   ++  I +  ++
Sbjct: 319 QRLRNLFIALGIWVLAAILVVFALGITRRLRQNVTDLGNVLSRIGDLTNQHEHIDVRTSE 378

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    ++ +   A   +  +  A   A++ K+ F+ ++S+E+R+PL  IIGFT+LLK +
Sbjct: 379 GVNKAYSLIED--ALDLIAYQKGAAEDANKAKSIFLANMSHEIRTPLNGIIGFTELLKNT 436

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+ ++  YV+ I  SS  LL ++N+ILD++ +++  ++L               + 
Sbjct: 437 ---DLDEEKRDYVDTIEKSSENLLTIINNILDVSKIESNKVELEDILFNPIQDFESAVEI 493

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
              K  E NI I +  D  L      D  ++ ++   ++SNA+ F+ +  T++++  R+ 
Sbjct: 494 YVAKAAEKNIDILLYIDPTLVHHLYGDITKIKEVLINLMSNAVKFTPEHGTIVVEILREP 553

Query: 717 GD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
                     FSV++ G  I ED   +VFN F         +  G GLGL+I   ++ + 
Sbjct: 554 SKAPGEAIVTFSVEDTGIGISEDKLANVFNAFSQADSTITRKYGGTGLGLTISSKYVAMM 613

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + + S+    T     +  KE
Sbjct: 614 GGKLQVKSTVGKGTRFYFTLAFKE 637


>gi|255534918|ref|YP_003095289.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
 gi|255341114|gb|ACU07227.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
          Length = 915

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/508 (19%), Positives = 197/508 (38%), Gaps = 39/508 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLE 357
                +L    E+       + +F  +      N +F ++    D  F++        +E
Sbjct: 141 KEQEQRLNSYDELFETSNDLLGVFSLDGKFVKLNPAFSKMLGWSDEQFMSRG-----FIE 195

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--QTLHVIVTSNPRGGTIWM 415
           F+      PE         N  +  +S     + + + +G  + +    T   + G ++ 
Sbjct: 196 FVH-----PEDRESTLQVINTLAQGESLVNFTNRYIIKSGAVRWIEWTCTPELQSGLVYT 250

Query: 416 F-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              ++T     +       +   +  +     +++   +G +   N A  +        L
Sbjct: 251 IGRDVTEFTTKQKLLERNEQKYRDPFEKNQGIISIHDDEGYLLDVNEAGLNASGYLREEL 310

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   I           +     + I TS      S + T+   +     +  +   
Sbjct: 311 KDLNLYDLIIPE-----KHQNVKAYLSQIKTSGH---ASGEMTVRKKNGEKAVWHFMSAI 362

Query: 535 NA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +       Q +   V++T+  + E  +    E   KA  +K+ FV ++S+E+R+PL  II
Sbjct: 363 DEDVDGKVQVIANAVDITERKKMEDEIVAAKELAEKAYVLKSEFVANMSHEIRTPLNGII 422

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GFT+LL  +   +L+  Q QY++ I+ S   L +++NDILD + ++   +KLN   + + 
Sbjct: 423 GFTELLLET---NLDDTQRQYLDIINQSGVSLYSIINDILDFSKLEKHKLKLNLDKVEIE 479

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +L++E    +A    +  + + +  D  +      D  RL Q+F  +LSNA+ F+ +G  
Sbjct: 480 ELVSEAFNIVAYSNTKKRLEMLIDIDDNIPRYVWTDEMRLKQVFVNLLSNALKFTEEGEI 539

Query: 708 V-ILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSI 760
           V  +K   D       F F V++ G  I ++    +F+ F            G GLGL+I
Sbjct: 540 VLYVKVLADLSEGKKKFRFGVRDTGVGINKEKQAVIFSAFSQEDGSITKKYGGTGLGLTI 599

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
               + L G  + + S     +     I
Sbjct: 600 SNQILELAGSVLQLESEQGKGSDFFFDI 627


>gi|254429345|ref|ZP_05043052.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195514|gb|EDX90473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 771

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 179/438 (40%), Gaps = 30/438 (6%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQ-TLH--VIVTSNPRG------GTIWMFENLTV 421
            +  +  +  + +  +    T    +G+ TLH    +   P G      G +    +  +
Sbjct: 81  QRKQQNLLRQLLEEQDVRAATLVFNDGRPTLHAGPRLRPAPDGAAPDAQGRVTTDTSWQL 140

Query: 422 QVDLE----TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
             DL      +       QG+ +  L   + +F     + +      ++           
Sbjct: 141 DRDLSGVLPAQLTVEFSQQGQYLSTLENLLTLF-----LVMLALIMIAMVPALRFSRQLT 195

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++ +   R  +      +         +   +L+  +  L+D+  E         Q
Sbjct: 196 QPISDMVSAVQRIRDGDLSMAIHTQAKGELSELETALRQMVAALADAQTELQQNVDQATQ 255

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +   +    E  L    +   KA  IK+ F+ ++S+E+R+PL  I+GFT LL  S
Sbjct: 256 DLRETLETIEIQNIE--LDMARKEALKASHIKSEFLANMSHEIRTPLNGILGFTKLLDRS 313

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               +  +Q  Y+  I  S+  LL ++ND+LD + ++AG + L+++ + L+DL+ +V+  
Sbjct: 314 ---PMTPRQEDYLSTIHKSAESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTL 370

Query: 658 IATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +A    E  +    +I      + + D  R+ Q+ + ++SNA+ F+ +GS V+     ++
Sbjct: 371 LAPMAQERGLEQAAIIYSDVPVALLGDPLRIRQVLTNLVSNAIKFTDQGSVVVRAMLEED 430

Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
                    +V + G  +  +  K +F+ F         Q  G GLGL+I +  +   GG
Sbjct: 431 RGAEAIIKITVTDTGPGLNPEAQKDLFSAFTQADQSARRQEGGTGLGLAISKRLVEGMGG 490

Query: 771 HVSISSSDEGVTTINCRI 788
            + I S +   +T    +
Sbjct: 491 EIGIDSREGRGSTFWFTL 508


>gi|330921689|ref|XP_003299527.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
 gi|311326752|gb|EFQ92366.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
          Length = 1358

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/585 (16%), Positives = 209/585 (35%), Gaps = 58/585 (9%)

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKI-------VRVLNSFGEAGIAIDVSK-----E 298
            +  +    +     +   + G    Y+I           +  G   I  D+++      
Sbjct: 390 EVCRTRDRVEKRRIGMRHPQTGTRLVYEINGEPVFHDETGDFLGGIVIFKDITEYTKQIA 449

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + +       I + + V +     +    + ++ + +   +              L F
Sbjct: 450 AQIEENEKQFEYIANFMPVMVWTTTPDGMHDWFSQRWYDYTGLTPDKSLGE---GWRLPF 506

Query: 359 LRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                       + + K  + ++     + +   W    G+ L     S           
Sbjct: 507 HPDDMATTGPRWFHSLKTGDEYNTEYRCQRYDGEWRWMLGRALPFYDDSGRIVKWFGTCT 566

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI-----------------KLSN 460
           ++   V    +     +   + I +    + V   +  +                  +  
Sbjct: 567 DIHDLVMARQEARQTREQLQQVIQYAKIVLWVIDRNDEVKVLEGDIAPHGRMRKEELIGR 626

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAA-------TCSRYYNESDGWDLFAAIITSFDDERKS 513
             F     T  +R      I+ I            RY +E+     +   +       ++
Sbjct: 627 NIFDVFELTGNDRKRWQGPIQEILQGKQSDEIVNGRYMSEA---RYYRTRLVPLMSACRT 683

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                    D V+  S   +   +       + +  +    L     A ++A  +K+ F+
Sbjct: 684 AGIEGNTFVDGVIGVS---MDITELREREEQLKEQEKENSRLLANEAAAKEASRMKSQFL 740

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  +IG ++LL      +LN +Q    E I  S+  LL ++NDILD + V
Sbjct: 741 ANMSHEIRTPIAGVIGMSELLFDM---NLNDEQKDCAENIHRSANSLLTVINDILDFSKV 797

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADRQRLLQI 690
           ++G + +      L+ +L +V + ++       +  +     ++ +    + D  RL QI
Sbjct: 798 ESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQDEVQADLRVMGDPGRLRQI 857

Query: 691 FSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNA 746
            + +L+N++ F+S G+  + +  ++++ D +   FSV + G  I E++ K +F  F    
Sbjct: 858 LTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGIGIEEEVRKRLFQPFSQAD 917

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               RR  G GLGL+I ++ + L  G + + S     TT    IP
Sbjct: 918 SSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 962


>gi|299146842|ref|ZP_07039910.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517333|gb|EFI41214.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 660

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/512 (20%), Positives = 224/512 (43%), Gaps = 43/512 (8%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-------IDLAFLATNPSNDELLEFLR 360
            + I ++L+V + ++D++  +   N S +           +          +DE+ E +R
Sbjct: 14  LHNIFNDLSVGLELYDKDGLMIDVNYSRLRSMGIKDKKDILGYNLFNYTSFSDEIKEQIR 73

Query: 361 SANKLPEQLNW------KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
               +     +      + +  N+  +     T     +  +  T ++++T +     +W
Sbjct: 74  KGETVRVMAKYDFDDLCRLFPTNLSGIKFFEITVSFVHNDKSEITNYMVITQDITERVLW 133

Query: 415 M--FENLTVQV--------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
              ++NL  +V        + E +   L++     +++++ G+A    D  ++  N +  
Sbjct: 134 QNKYDNLYEEVVRSKKELLESEQRMIHLIRQNELVLNNINSGLAYIANDYIVQWENISLC 193

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           S   + E           +    +          +      S   E         L +  
Sbjct: 194 SKSLSYEAYKKG-----ELCYLTAHNRTTPCENCVMQRARRSGQVE----SILFNLDNKH 244

Query: 525 VLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           V+E    P+ N Q      ++   +VT+       L +      ++D++K++F+ ++S+E
Sbjct: 245 VIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHE 304

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL    +     ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++
Sbjct: 305 IRTPLNAIVGFSDLLM---VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVE 361

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L    NE+  S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+
Sbjct: 362 LKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAI 421

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            ++SKG  + +   + +G+    V++ G  IPED    VF+RF       Q  G GLGLS
Sbjct: 422 KYTSKG-MIEMGYEKIDGNIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLS 478

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I ++ +    G +   S  +  +     +P +
Sbjct: 479 ICKAIVEACRGEIGFESEFDKGSLFWAVLPCQ 510


>gi|153868804|ref|ZP_01998545.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152074621|gb|EDN71458.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 655

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+AL +  +    A+  K+ F+ ++S+E+R+P+  IIGF+D+L +      + KQ  Y+
Sbjct: 158 AEQALKQAKDKAETANRAKSEFLANMSHEIRTPMNAIIGFSDILASKI---TDKKQINYI 214

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  ++  LL L++DILDL+ ++AG +++ Y  + L  +   ++Q  + K+ E NI   
Sbjct: 215 SSIQTAAKSLLTLIDDILDLSKIEAGRLEIQYEEVNLQGIFIALQQVFSLKIAEKNIEFI 274

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
           +  D  L      D  RL Q+   ++ NA+ F++ G   +    +    +  D   +V++
Sbjct: 275 MEIDETLPPSLFLDETRLRQMLLNLMGNAIKFTNSGYVKLCANKIDTEENYIDLTLAVED 334

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  IP +    +F  F         Q  G GLGL+I +  + +  G +S++SS    + 
Sbjct: 335 SGIGIPAEQQTLIFESFRQQDGQSTRQYGGTGLGLTITKRLVEMMNGQISLTSSPGKGSR 394

Query: 784 INCRI 788
               +
Sbjct: 395 FEIAL 399


>gi|207744619|ref|YP_002261011.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           IPO1609]
 gi|206596025|emb|CAQ62952.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           IPO1609]
          Length = 1003

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 116/622 (18%), Positives = 227/622 (36%), Gaps = 48/622 (7%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
           + +    +    +W R     +L    +    T ++      A    R++          
Sbjct: 5   MLRRAL-AAPVHLWRRAGTA-LLLCATAIALLTASDYTQADDATRALRQMGPPPAPSAAA 62

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
             +         + TL   + +  ++ R                E T+  QL   + ++ 
Sbjct: 63  PMARCAPAAAIVLWTLTVLSIRHMQLRRETRQRRHT--------EATLARQLDFQHMLME 114

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L   +A  D        N +F  L+      +         L   R+  ++ + ++ + 
Sbjct: 115 SLPFPLAAQDTQHRYVAVNAAFCHLFGRSREAVLGRTPAHLGLGCARTTARV-QDIDRRA 173

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLT------VQVD 424
                 +    + T  D           V     P G   GT+    +L+         +
Sbjct: 174 VATGQDAREALTITAADGRERR--VLYWVAPLRLPDGQPGGTVASLIDLSNLSNLSEIRE 231

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVF-----GPDGRIKLSNPAFRSLWK--TEENRLSPG 477
            + +     +   ++I+ L   V           GRI+    + R      T+       
Sbjct: 232 AQARAKRQAQRLHDSIESLPALVCQVEMRPGTTRGRIRYMAGSARETLGAQTDAAPFLLP 291

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PN 535
           +  R +     R  +++      A  +T  D   + + G     S   L    +P   P+
Sbjct: 292 SPARLVHQDDRRRMHDAALQS--ATQLTPLDQPFRHVGGD---GSVRWLHAHALPRREPD 346

Query: 536 AQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +T+ T      +    RA  L    +A   A   K+ F+  +S+E+R+P+  ++G    
Sbjct: 347 GRTVWTGYLRDVTQERARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLV-- 404

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            +      L  +Q + V     SS  LL++++DILD A ++AG + +  +   L +L + 
Sbjct: 405 -ELLLQTPLEREQQRMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDS 463

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
               +A + HE ++ ++V  D  +  +   D  RL Q+ S +LSNA+ F+ +GS  +   
Sbjct: 464 TVGLLAGRAHERSLSVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAA 523

Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
            + AA D    I  + + G  I  +   ++F  FV        +  G GLGL+I      
Sbjct: 524 CVGAATDTAHLIIRIADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLAR 583

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L GG + + S+    TT+  R+
Sbjct: 584 LMGGSLDMDSTPGVGTTLTLRL 605



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/504 (12%), Positives = 132/504 (26%), Gaps = 60/504 (11%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           L    Y +   AT  LR+ G      A             V  +   L I  +  +  E 
Sbjct: 34  LTASDYTQADDATRALRQMGPPPAPSAAAPMARCAPAAAIVLWTLTVLSIRHMQ-LRRET 92

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKA 236
            +       L+  +    +L +SL F +  +D     +  N ++        E ++ +  
Sbjct: 93  RQRRHTEATLARQLDFQHMLMESLPFPLAAQDTQHRYVAVNAAFCHLFGRSREAVLGRTP 152

Query: 237 IGESRKLFKEEIK----KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-----NSFG 287
                   +   +     R   ++  +     T++  +    +    V  L        G
Sbjct: 153 AHLGLGCARTTARVQDIDRRAVATGQDAREALTITAADGRERRVLYWVAPLRLPDGQPGG 212

Query: 288 EAGIAIDVS----------KEITVNDQLTHTYEILHNLTVAIAIFD-----QNRYLQFHN 332
                ID+S           +     Q    ++ + +L   +   +         +++  
Sbjct: 213 TVASLIDLSNLSNLSEIREAQARAKRQAQRLHDSIESLPALVCQVEMRPGTTRGRIRYMA 272

Query: 333 RSFVELWEIDLA---FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            S  E          FL  +P+            +L  Q + +   +             
Sbjct: 273 GSARETLGAQTDAAPFLLPSPA------------RLVHQDDRRRMHDAALQSATQLTPLD 320

Query: 390 DTWHLPNG----QTLHVIVTSN--PRGGTIWM--FENLTVQVDLETKYNTLVKVQGETID 441
             +    G    + LH        P G T+W     ++T +           +     + 
Sbjct: 321 QPFRHVGGDGSVRWLHAHALPRREPDGRTVWTGYLRDVTQERARADALEAARQAAESAL- 379

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI---------RNIAATCSRYYN 492
           H  +              N     +    +  L               R +        +
Sbjct: 380 HAKDRFLATMSHEIRTPMNGVLGLVELLLQTPLEREQQRMVTLAQESSRALLHILDDILD 439

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            +       A+  +  D R+    T+ LL+    E S+         +      D +R  
Sbjct: 440 YAKIEAGHLAVTPAPTDLRELFDSTVGLLAGRAHERSLSVRVEVDAAVPATVSVDGMRLR 499

Query: 553 RALTEKNEALRKADEIKNSFVQHV 576
           + L+       K  E  +  +   
Sbjct: 500 QVLSNLLSNAIKFTERGSVHLSAA 523


>gi|206889477|ref|YP_002248008.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741415|gb|ACI20472.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 392

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 168/364 (46%), Gaps = 30/364 (8%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +     +  ++EG+ +  P G I L+N +F+ + K +E                 R   E
Sbjct: 48  QSFETILKSITEGLLIIDPKGYIMLANQSFKDILKIDEPP-------------EGRLVIE 94

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLS---DSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                    +I+S   +++ L   + L     D  L    +P+ +++  ++F+ +     
Sbjct: 95  VIRNIDLINLISSSISKKEDLAEEITLKKAGKDIYLLAKAMPVVDSEGTISFLII----- 149

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L      L++ + ++  FV +VS+EL++P+T I G+ + L    +        +++
Sbjct: 150 ----LLHDITRLKQLENVRRDFVANVSHELKTPVTAIKGYAETLLDGAIND-KENSKKFI 204

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I   +  L  LV D+L L+ ++ G +K+    IVL++L++ V Q +  K  +  + ++
Sbjct: 205 EIIKNQADRLNALVEDLLTLSRIEFGDIKIEKENIVLDELISSVFQILKDKAQKKGVLLQ 264

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                +  +  AD+ R+ QI   ++ NA+ F+ KG  V ++  ++N   + SV++ G  I
Sbjct: 265 KEIPPE-TAIYADQYRMSQIMINLVDNAIKFTEKG-FVKVRFFKENSKGVISVEDTGIGI 322

Query: 731 PEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P++    +  RF         Q  G GLGL+IV+  +  HG  + I S  E  T +   I
Sbjct: 323 PKEHIHRIGERFYRVDKARSRQLGGTGLGLAIVKHLVLAHGWQLQIESEVEKGTKVKIVI 382

Query: 789 PSKE 792
           P KE
Sbjct: 383 PEKE 386



 Score = 44.2 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                IL ++T  + I D   Y+   N+SF ++ +ID       P    ++E +R+ + +
Sbjct: 48  QSFETILKSITEGLLIIDPKGYIMLANQSFKDILKIDEP-----PEGRLVIEVIRNIDLI 102

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
               +  + KE++       +  KD + L   + + V+ +       I +  ++T    L
Sbjct: 103 NLISSSISKKEDLAEEITLKKAGKDIYLLA--KAMPVVDSEGTISFLIILLHDITRLKQL 160

Query: 426 E 426
           E
Sbjct: 161 E 161


>gi|170741630|ref|YP_001770285.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195904|gb|ACA17851.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1362

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 135/842 (16%), Positives = 271/842 (32%), Gaps = 98/842 (11%)

Query: 7    TIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEIC 66
             +G G+ I +      ++   G    +    +      +R  N   +++ E  +      
Sbjct: 311  ALGSGEAIPVPRSSFSEVDEVGAALAVASARLRDQADALRAINRDLEQMVERRTREVAAQ 370

Query: 67   DQLSKYHSLLTENNCLTIVWDGKDE-------TPEIIGQLHQR-IDIPQTDTDLLSFENW 118
              L    + L   +   ++ DG+           E++G      +  P      L    W
Sbjct: 371  QVL--LSTTLDAMDQGLVMIDGRGTVAVANRRAAELLGLASDALVGAPHARVPDLLRAAW 428

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG---SCAFLRILSLDGIY 175
             +                 G +        +   ++I  R +             +    
Sbjct: 429  SEAEPGGA---------HAGPAPLAERTLPDGRVLEI--RSTWLPEGGVVCTCTDVTARR 477

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            S           L    ++       +D  V   DQ G +   N       +       +
Sbjct: 478  S-------AEAALHEKTALLDATLAHMDQGVLVIDQDGIVQLCNERALALLDLPAAFATE 530

Query: 236  AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK-------IVRVLNSFGE 288
                +  L   + +    S +  + +    +     G  K Y+       ++ V      
Sbjct: 531  KPSFAA-LVAYQQRTGEFSGATEDHDPWLKLKGDLLGAPKVYERSRPNGTVIEVRTVRLA 589

Query: 289  AGIAI----DVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFH-NRSFVELW 339
            +G AI    DV+        +  +      L  A+         +     + N  F   +
Sbjct: 590  SGGAIRTFSDVTAHRQRERAIGLSEARYRALAEALPQLVWTVRPDTREALYRNAQFDRYY 649

Query: 340  EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-- 397
                      P ++ + + L   +  P                    T +      +G  
Sbjct: 650  G---------PISNAVADRLAHNH--PADSARMAEAWARAERASEPLTVEGRLRRHDGVY 698

Query: 398  QTLHVIVTSNPRGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
            +   +++      G I        ++   +  + +      +          GV  +   
Sbjct: 699  RWHRLVMVPLLTQGVITEWLGTALDIDDIITAQEQVRQSKDLLQLAQTAAGAGVWEWDMQ 758

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
              + L +      +  E +       +   +   +R  +  D   ++ A+  +    R++
Sbjct: 759  AGLVLLSRVSARRYGLEVDAADAVVTLT--SQEWTRLLHPEDAGRVWEAVHEAVAT-RQN 815

Query: 514  LQGTLELLSDS-------VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNE- 560
               T    +          +E     + N      + +    +VT  +RAERAL +    
Sbjct: 816  YAVTFRPAARGGGGAVECWIEGHGRIMRNGSGAPVRIVGLDFDVTPRMRAERALKQATRL 875

Query: 561  ------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                      A   K+ F+  +S+E+R+PL  I+G+ DLL  ++ G L ++Q + VE+I 
Sbjct: 876  AEQAREEAEAASTAKSEFLAMMSHEIRTPLHGILGYADLL--TECGLLAAEQQRQVEHIR 933

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +   LL +VND+LD + ++AG + L+     L  L+ EV   +        + +    D
Sbjct: 934  TAGRALLAVVNDVLDFSAIEAGRVALDPRPFALRALIGEVVAIVREPAERKGLTLAAEID 993

Query: 675  GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGS 728
              +    V D+ R+ Q+   + +NA  F   GS V L  A D          F+V++ G 
Sbjct: 994  PAVPDWLVGDQGRVRQVLLNLAANAQKFCHAGS-VTLSVAPDRIAAEALTVRFAVRDTGV 1052

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I ED    +F RF       +R   G GLGL+I ++ +   GG + + S     +T   
Sbjct: 1053 GIEEDKLGRLFQRFSQADGSIRREFGGTGLGLAISKALVEAMGGRIGVESVPGRGSTFWF 1112

Query: 787  RI 788
             +
Sbjct: 1113 TL 1114


>gi|237709891|ref|ZP_04540372.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
 gi|237725439|ref|ZP_04555920.1| two-component system histidine kinase [Bacteroides sp. D4]
 gi|229436126|gb|EEO46203.1| two-component system histidine kinase [Bacteroides dorei 5_1_36/D4]
 gi|229455984|gb|EEO61705.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
          Length = 494

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/499 (18%), Positives = 204/499 (40%), Gaps = 25/499 (5%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +  QL  + +IL+ L  A+   D N  ++  N   +   E+    +    +  +++  LR
Sbjct: 7   IKGQLVLSKQILNILPSALIFMDANGTIERINDEAIHELELGDRDIKGE-NISQIISILR 65

Query: 361 S-ANKLPEQLNWKTWKENIFSVYKSSETHKD---TWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +  N +PE +     +E I    K++    +      +  G+   V  T       I  F
Sbjct: 66  NHQNIIPELIEALKHEEKIIDFPKATFIKSELQNIRFIAEGRIASV-FTKKKLSQMILSF 124

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            N+  ++  +   N  + +              +  + +  + +  +             
Sbjct: 125 RNIEGELTQQHIINMALSLTKIYP-------WFYDMEKKKLIIDARWFKYLNIPTK--DY 175

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAII-----TSFDDERKSLQGTLELLSDSVLEYSII 531
                  AA       ++    L   I       +F    K   G+ E   +  L    I
Sbjct: 176 TLTEEEFAAYLHPDDRDTLMNALTNQIAGNLNTEAFTYRLKQSDGSWEWFEEQSLYLEQI 235

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                + +    ++ +   AE  L    +   ++D++K++F+ ++S+E+R+PL  IIGF+
Sbjct: 236 EGAPYRIIGACQSIQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFS 295

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL + ++     +  ++V  I+ +   LL L++DI+D++ +++  ++       L+ +L
Sbjct: 296 NLLVSEEMDG--EESKEFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQIL 353

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +E+ Q  +  +    I  ++    +    + D  R  Q+ + +++NA+ F+  G   +  
Sbjct: 354 SEIYQCQSLNIPSK-IEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMYGHITLGS 412

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
               NG     VK+ G  +P++    +F RF        + G GLGLSI ++ I    G 
Sbjct: 413 KILQNGTIDIYVKDTGMGMPQEKLAHIFERFYKMDSF--KPGAGLGLSICKTIIEHMQGE 470

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++++S +   +     IP+
Sbjct: 471 INVTSIEGKGSNFTITIPT 489


>gi|197118872|ref|YP_002139299.1| sensor histidine kinase response receiver domain-containing protein
           [Geobacter bemidjiensis Bem]
 gi|197088232|gb|ACH39503.1| sensor histidine kinase response receiver domain protein, HAMP
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 1362

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 128/255 (50%), Gaps = 3/255 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+        +  R  + L  + + L +A  +K+ F+ ++S+ELR+PL +++  + +L  
Sbjct: 554 QSTELAHQSEELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAV 613

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L   +  Y+  I  +   LL+L+NDILDLA +++G  ++   T+ L  +  EV  
Sbjct: 614 QGGSRLTEDEKGYLSIIERNGKHLLSLINDILDLAKIESGRQEVYLETVSLQKVTAEVVD 673

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            ++    E  I I + +   L + V D +RL Q+   ++ NA+ F+++G+ V ++   + 
Sbjct: 674 GLSVLAREKGIAISLEAPEALPTAVIDVKRLRQMLQNLIGNAVKFTAEGA-VTVRLGAEG 732

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
            +F+  V++ G  I     +++F+ F        R   G GLGL+IV+    L GG VS+
Sbjct: 733 EEFLVEVEDTGIGIAPQYLETIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSV 792

Query: 775 SSSDEGVTTINCRIP 789
            S     +    R+P
Sbjct: 793 RSELGKGSVFTLRLP 807


>gi|83747379|ref|ZP_00944419.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551]
 gi|83725966|gb|EAP73104.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551]
          Length = 1000

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/620 (18%), Positives = 221/620 (35%), Gaps = 44/620 (7%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
           + +    +    +W R     +L    +    T ++      A    R++          
Sbjct: 2   MLRRAL-AAPVHLWRRAGTA-LLLCATAIALLTASDYTQADDATRALRQMGPPPAPSAAA 59

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
             +         + TL   + +  ++ R                E T+  QL   + ++ 
Sbjct: 60  PMARCAPAAAIVLWTLTVLSIRHMQLRRETRQRRHT--------EATLARQLDFQHMLME 111

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L   +A  D        N +F  L+      +         L   R+  ++ + ++ + 
Sbjct: 112 SLPFPLAAQDTQHRYVAVNAAFCHLFGRSREAVLGRTPAHLGLGCARTTARV-QDIDRRA 170

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLT------VQVD 424
                 +    + T  D           V     P G   GT+    +L+         +
Sbjct: 171 VATGQDAREALTITAADGRERR--VLYWVAPLRLPDGQPGGTVASLIDLSNLSNLSEIRE 228

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVF-----GPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            + +     +   ++I+ L   V           GRI+    + R     + +       
Sbjct: 229 AQARAKRQAQRLHDSIESLPALVCQVEMRPGTTRGRIRYMAGSARETLGAQTDAAPFLLP 288

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQ 537
                          D     A  +T  D   + + G     S   L    +P   P+ +
Sbjct: 289 SPARLVHQDDRRRMHDAALQSATQLTPLDQPFRHVGGD---GSVRWLHAHALPRREPDGR 345

Query: 538 TMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           T+ T      +    RA  L    +A   A   K+ F+  +S+E+R+P+  ++G     +
Sbjct: 346 TVWTGYLRDVTQERARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLV---E 402

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L  +Q + V     SS  LL++++DILD A ++AG + +  +   L +L +   
Sbjct: 403 LLLQTPLEREQQRMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTV 462

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----L 710
             +A + HE ++ ++V  D  +  +   D  RL Q+ S +LSNA+ F+ +GS  +    +
Sbjct: 463 GLLAGRAHERSLSVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGSVHLSAACV 522

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
            AA D    I  + + G  I  +   ++F  FV        +  G GLGL+I      L 
Sbjct: 523 GAATDTAHLIIRIADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLM 582

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + + S+    TT+  R+
Sbjct: 583 GGSLDMDSTPGVGTTLTLRL 602



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/504 (12%), Positives = 132/504 (26%), Gaps = 60/504 (11%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           L    Y +   AT  LR+ G      A             V  +   L I  +  +  E 
Sbjct: 31  LTASDYTQADDATRALRQMGPPPAPSAAAPMARCAPAAAIVLWTLTVLSIRHMQ-LRRET 89

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKA 236
            +       L+  +    +L +SL F +  +D     +  N ++        E ++ +  
Sbjct: 90  RQRRHTEATLARQLDFQHMLMESLPFPLAAQDTQHRYVAVNAAFCHLFGRSREAVLGRTP 149

Query: 237 IGESRKLFKEEIK----KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL-----NSFG 287
                   +   +     R   ++  +     T++  +    +    V  L        G
Sbjct: 150 AHLGLGCARTTARVQDIDRRAVATGQDAREALTITAADGRERRVLYWVAPLRLPDGQPGG 209

Query: 288 EAGIAIDVS----------KEITVNDQLTHTYEILHNLTVAIAIFD-----QNRYLQFHN 332
                ID+S           +     Q    ++ + +L   +   +         +++  
Sbjct: 210 TVASLIDLSNLSNLSEIREAQARAKRQAQRLHDSIESLPALVCQVEMRPGTTRGRIRYMA 269

Query: 333 RSFVELWEIDLA---FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            S  E          FL  +P+            +L  Q + +   +             
Sbjct: 270 GSARETLGAQTDAAPFLLPSPA------------RLVHQDDRRRMHDAALQSATQLTPLD 317

Query: 390 DTWHLPNG----QTLHVIVTSN--PRGGTIWM--FENLTVQVDLETKYNTLVKVQGETID 441
             +    G    + LH        P G T+W     ++T +           +     + 
Sbjct: 318 QPFRHVGGDGSVRWLHAHALPRREPDGRTVWTGYLRDVTQERARADALEAARQAAESAL- 376

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI---------RNIAATCSRYYN 492
           H  +              N     +    +  L               R +        +
Sbjct: 377 HAKDRFLATMSHEIRTPMNGVLGLVELLLQTPLEREQQRMVTLAQESSRALLHILDDILD 436

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            +       A+  +  D R+    T+ LL+    E S+         +      D +R  
Sbjct: 437 YAKIEAGHLAVTPAPTDLRELFDSTVGLLAGRAHERSLSVRVEVDAAVPATVSVDGMRLR 496

Query: 553 RALTEKNEALRKADEIKNSFVQHV 576
           + L+       K  E  +  +   
Sbjct: 497 QVLSNLLSNAIKFTERGSVHLSAA 520


>gi|271961978|ref|YP_003336174.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
 gi|270505153|gb|ACZ83431.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
          Length = 1392

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 136/320 (42%), Gaps = 18/320 (5%)

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              SR  +           +    DE +  Q  L   +  + + +   L   Q     +  
Sbjct: 876  ANSRTEDLLTESQRLTTELQERSDELQRQQEELRRSNAELEDKAA--LLAKQNRAIEIQN 933

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                +A R L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L  +
Sbjct: 934  FQIEQARRTLEERAEQLAVSSRYKSEFLANMSHELRTPLNSLLVLAKLLTENAEGNLTVQ 993

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q ++   I  + + LL L+NDILDL+ V+AG M ++   I L  L++  + + A    + 
Sbjct: 994  QVEFARTIHGAGSALLQLINDILDLSKVEAGRMDIHPQQISLPKLVDYFEATFAPLAQDK 1053

Query: 666  NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAAR-------- 714
             +   V  D  +      D QRL Q+   +LSNA+ F+ KG     ++ A R        
Sbjct: 1054 GLSFAVEVDSSVPQELRTDEQRLQQVLRNLLSNAIKFTPKGEVRLRVIHAQRAVAFVDDT 1113

Query: 715  ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
                +G   F V + G  I  D  + +F  F         +  G GLGLSI      L G
Sbjct: 1114 LRGADGILAFEVVDTGIGIAADKLEVIFEAFRQADGTTSRKYGGTGLGLSICREIARLLG 1173

Query: 770  GHVSISSSDEGVTTINCRIP 789
            G + + S     +T    +P
Sbjct: 1174 GEIHVVSEVGQGSTFTLYLP 1193


>gi|283853366|ref|ZP_06370613.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571234|gb|EFC19247.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 963

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/439 (20%), Positives = 167/439 (38%), Gaps = 32/439 (7%)

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           +E   S+  S    ++   L  G+            G +     +  + + E +    + 
Sbjct: 239 QETSQSLAASRAEIEENRRLLAGRVEERTAALARANGRLTA--EVEARREAEARQERALA 296

Query: 435 VQGETIDHLSEGV--AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           +    ++  +E V     GP   +   N  F  LW   ++  S   HI    A   R   
Sbjct: 297 LYKAILESTAEAVMCVGVGPQRDVLAVNRRFLELWGLPDDWPSL-DHIARGQAIRDRLRE 355

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNVTDS 548
                  F  ++    D+ +     LEL     LE    P+   +  +    ++++VT  
Sbjct: 356 PEAAEQAFRDLMR---DDTRLDTSCLELGDGRFLERRSGPIIQGEAYIGRVLSYIDVTAD 412

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              E +          A + K  F+  +S+E+R+PL  +IG T+ +        + +Q  
Sbjct: 413 KEREASTERAKNRAEDASKAKGDFLAVMSHEIRTPLNVVIGLTEEMLAR---PASEEQLG 469

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++  +  S+  LL +VNDILD + ++AG + L      +  L+  V ++   +     +R
Sbjct: 470 HLRTVRESAAHLLGVVNDILDFSKIEAGKLVLERLDFDVRRLVAGVAEAFDREARRKGLR 529

Query: 669 IKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------- 717
            +  ++DG  G+   D  RL Q+F  ++ NA+ F+  GS V L                 
Sbjct: 530 FEARVADGLPGTLCGDPGRLRQVFLNLVGNAVKFTEAGS-VSLSVGPAQAAPGAVPDGRI 588

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
                V + G  I  D    +F+ F         +  G GLGL+I +  +   GG +++ 
Sbjct: 589 GIEVCVADTGIGIEPDRLPEIFDHFQQGGGSIGRRFGGTGLGLAISKGIVERMGGRITVE 648

Query: 776 SSDEGVTTINCR---IPSK 791
           S     +        +P +
Sbjct: 649 SRPGEGSVFRFTVRLLPPR 667



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 71/230 (30%), Gaps = 24/230 (10%)

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
            +A        +E  +    S + +E+N       +     ++  + R          A 
Sbjct: 228 AQAFNAMSARLQETSQSLAASRAEIEENRRLLAGRV---EERTAALARANGRLTAEVEAR 284

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPS 351
               E      L     IL +   A+        R +   NR F+ELW +   +    PS
Sbjct: 285 -REAEARQERALALYKAILESTAEAVMCVGVGPQRDVLAVNRRFLELWGLPDDW----PS 339

Query: 352 NDELLE--FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHLPNGQTLHVIVTSN 407
            D +     +R   + PE        E  F      +T  DT    L +G+ L       
Sbjct: 340 LDHIARGQAIRDRLREPEAA------EQAFRDLMRDDTRLDTSCLELGDGRFLERRSGPI 393

Query: 408 PRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
            +G    G +  + ++T   + E           +      + +AV   +
Sbjct: 394 IQGEAYIGRVLSYIDVTADKEREASTERAKNRAEDASKAKGDFLAVMSHE 443


>gi|160935826|ref|ZP_02083201.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441570|gb|EDP19280.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC
           BAA-613]
          Length = 928

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/622 (16%), Positives = 228/622 (36%), Gaps = 57/622 (9%)

Query: 208 HRDQAGDILWANIS---------------------YKKNTETEGIVFQKAIGESRKLFKE 246
             D+    LW N S                     Y           ++ + ++ +  ++
Sbjct: 35  LLDEDLTFLWGNSSFFSGIGYTAERFGGLFSTLRQYYAAMPDVFSCIRQELTQAVENERQ 94

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ-L 305
           +I+  +           + +      ++ +   V      G   +A    +   +  Q L
Sbjct: 95  DIELTVRLPLKEGGYSWKHLYGTVREDSLAGGKVLQAELAGVDALAAGKEELERLYRQKL 154

Query: 306 THTYEILHNLTVAIAIFDQNRY-LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
            + + +L        I D + Y L + N+   E+  +     A     + +       + 
Sbjct: 155 QYFHFMLDTYEGNAYISDMDTYELLYVNQHSCEVLGMPAVKAAGRKCYEVIQGR---TSP 211

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
            P   N K  +   +     +   + T+ + N + +            + +  ++     
Sbjct: 212 CPFCTNSKITENEFYEWEFQNPVLERTFRIKN-RIIDWEGHR----ARLELSHDM---YS 263

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNP-AFRSLWKTEENRLSPGTHIR- 481
            E K     + +   +  +  G+A     D R  L    +F  L    +       H + 
Sbjct: 264 TEYKLAKKDQERDALVRSVPGGLARVDGRDMRTVLWYSGSFLDLIGYTKEEFEQEMHSQC 323

Query: 482 --------NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                      A       E+    +  + I + D + K L  T   +S     +  IP 
Sbjct: 324 SYVHPDDKERVAAVMLQSRETGRPTMVESRIFTQDGKVKILLMTCSYVSGEE-NWDGIPS 382

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +      T+  R  +AL +  +A + A++ K +F+  +S+++R+P+  IIG   +
Sbjct: 383 YYTVGIDVTAERTEQARQRQALEDACQAAQIANDAKTNFLSSMSHDIRTPMNAIIGMAVI 442

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            + +       K    +  I+ SS  LLNL+N++LD++ +++G + L    + L +L+ +
Sbjct: 443 AQANLQSP--EKIQDCLNKINVSSRHLLNLINEVLDMSRIESGKIDLISENVSLPELIED 500

Query: 654 VKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V         E ++ +++ +D  +    V D+ RL Q+   +LSNA+ ++ +G +V L+ 
Sbjct: 501 VMDVFRPLAAEKHLELQINADHVRHEKVVTDQNRLQQVLVNLLSNAIKYTPEGGSVGLRV 560

Query: 713 AR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
                     G + F V +NG  +  D    +F  F         Q +G GLG++I ++ 
Sbjct: 561 REIPAFAKGKGQYEFIVTDNGIGMSGDFIPHIFEPFSRTEESKTNQIQGTGLGMAITQNI 620

Query: 765 INLHGGHVSISSSDEGVTTINC 786
           +++  G + + S     +    
Sbjct: 621 VSMMNGTIEVKSVLGEGSQFIV 642


>gi|329849356|ref|ZP_08264202.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328841267|gb|EGF90837.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 535

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 151/317 (47%), Gaps = 20/317 (6%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN------------AQTML 540
           + +  D+   ++TS   + + ++  LE +    L    + L N             +   
Sbjct: 75  QPEWSDIPIVMLTSPGPDTRGVRQKLEQVGHMTLIKRPVQLDNFLSTIRAALRDRERQYR 134

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             + + D  R  RAL    E    A+  K+ F+ ++S+E+R+P+  I+G + +LK S+  
Sbjct: 135 MRIYLEDRERQTRALEIAVEKANAANTAKSEFLANMSHEIRTPMNAILGLSTILKHSQ-- 192

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q +Y++ + ASS  LL L+ND+LD+A ++A  +++ +    L+ ++ ++   +  
Sbjct: 193 PLTEQQHKYIDTLGASSESLLMLINDLLDIAKIEASGIEIEHIPFQLDQVIRDIADMMGL 252

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
           K  E ++ +++  D   G  F  D  RL QI + + SNA+ F+  G   I+ A+   G  
Sbjct: 253 KAREKDLDLRLDLDHIQGKWFCGDPARLRQIVTNLCSNAIKFTDSGEVAIIVASAPQGRH 312

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
                SV + G  I  D    +F +F    +    +  G GLGL+I ++   L GG +++
Sbjct: 313 CHITISVTDTGVGIAPDKLDRIFAKFTQADNTISRKFGGTGLGLAISKTLAELMGGTIAV 372

Query: 775 SSSDEGVTTINCRIPSK 791
            S  +  +     +P +
Sbjct: 373 ESELDRGSRFTLALPLR 389


>gi|297538157|ref|YP_003673926.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297257504|gb|ADI29349.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 873

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 116/669 (17%), Positives = 229/669 (34%), Gaps = 59/669 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
             S   +       L +      V  +S+   V   D    +   N   +K T  T    
Sbjct: 53  QESTNKQLRQLNATLQDSEEKLTVTLNSIGDAVITTDADARVTLLNPLAEKLTGWTLAEA 112

Query: 233 FQKAIGESRKLFKEEIK-----KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
             + IGE   +  +E +       M + +          + L   +     I        
Sbjct: 113 AGRLIGEVFPIINKETRLPATIPVMETLAEGTIQGLANHTVLIARDGSECDIADSCAPIR 172

Query: 287 -------GEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIA-IFDQNRYLQFHNRS 334
                  G   +  +VS+E  V   L         IL+ +   I  +   N  ++  N +
Sbjct: 173 DREGQVVGAVLVFRNVSEEYAVQQALRDNTALIQTILNTVADGIITLHASNGTIETVNPT 232

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
             +++    A LA   +   L+  L    +     ++    +   +V    E     W  
Sbjct: 233 AQKMFGFSGAELAGL-NFSVLIPELDQEQRNSSLKHYSP-SDEARAVGLGREVI--GWRK 288

Query: 395 PNGQ-TLHVIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            N    L + V+    GG      +  +++ +   E        +Q    +  +      
Sbjct: 289 DNKPFPLEIAVSEMWLGGERYFTCILRDISARRLAEEAALNAGALQSAIFNSENFSSIAT 348

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT----- 505
              G I++ N     +     + +        I+                A  IT     
Sbjct: 349 DAKGVIQIFNVGAERMLGYTADEVMNKITPAEISDPEEVIARAKTLSIELATAITPGFEA 408

Query: 506 ------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-------MLTFVNVTDSVRAE 552
                    ++   L    +  S      S+  L +AQ+       + T       + AE
Sbjct: 409 LVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQSAIIGYLLIGTDNTARKQIEAE 468

Query: 553 R------------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           R             L        KA+  K+ F+  +S+ELR+PL  I+GF  L+++    
Sbjct: 469 RTTLHEALQLKNVELERATFVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLIESGTPA 528

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              + Q + ++ I  +   LL L+N++LDLA +++G + L+   ++L D+++E +  I  
Sbjct: 529 P-TASQKKSIDQILKAGWYLLELINEVLDLALIESGKLALSLEPVLLADVMHECEAMIEP 587

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
           +     I +             DR R+ QI   +LSNA+ ++    TV ++ +   +   
Sbjct: 588 QAQSREINVIFKQPEVPYCVRGDRTRVKQIVINLLSNAIKYNRVNGTVTVECSITPHDTV 647

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             SV++ G+ + ++    +F  F       +  G G+GL + +   +L  G + + S   
Sbjct: 648 RISVQDTGAGLTDEELTQLFQPFNRLGQNTKEEGTGIGLVVCKRLTDLMKGKIGVESIVG 707

Query: 780 GVTTINCRI 788
             +T    +
Sbjct: 708 EGSTFWIEL 716


>gi|28199692|ref|NP_780006.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa Temecula1]
 gi|28057813|gb|AAO29655.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa Temecula1]
          Length = 499

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 181/468 (38%), Gaps = 44/468 (9%)

Query: 351 SNDELLEFLRSANKLPE------QLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVI 403
           +N      LR  + + E        +   + +    V  S +  H +   L    ++ V+
Sbjct: 18  TNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARALRRWYSVEVM 77

Query: 404 VTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
               P G  +  +F ++T    +E +            D L   V VF   G ++  N A
Sbjct: 78  RVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTA 137

Query: 463 FRSLWKTEE-----NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           +   +  +         S   H  ++     +            A++ +     +   G 
Sbjct: 138 YGEFFGVDLSSGTLPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA-----RRYDG- 191

Query: 518 LELLSDSVLEYSIIPL--PNAQTMLTFVNVTD-SVRAERAL---------TEKNEALRKA 565
                   +E S  P   P+   +    +  D + R E  L                   
Sbjct: 192 ----QWRWIEMSATPRYSPDGHFIGLTGSSQDVTERLEIELAREQLLKSERAARNEAENM 247

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNL 623
             +K+ F+  +S+ELR+PLT I+G+++LL       +  +   Y  +  I++S+ +   L
Sbjct: 248 ARLKDEFLSTLSHELRTPLTTILGWSELLLQR----IEEQHPCYKGLSVIASSAKVQKRL 303

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LDL+++  G M+L    + L + + EV       +     R+ + +       + D
Sbjct: 304 ISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGD 363

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QIF  +LSNA+ F+     + ++   D   F  SV ++G  I  +    +F+RF 
Sbjct: 364 ATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAEFLPHLFSRFR 423

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
                  R   G+GLGL+IV+S + +HGG+V  +S            +
Sbjct: 424 QADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 471



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 91/244 (37%), Gaps = 31/244 (12%)

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G     N S+ ++   + +V +   G       E IK+    + + ++   E  +    
Sbjct: 12  DGIFRLTNASFGRHLRLDSVVGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARAL--- 68

Query: 272 GNNKSY--KIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD 323
              + Y  +++RV    G     + +D+++   +  +L  +    + L   +     +FD
Sbjct: 69  --RRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFD 126

Query: 324 QNRYLQFHNRSFVELWEIDLA-------FLATNPSNDELLEF-LRSANKLPEQLNWKTWK 375
               ++F N ++ E + +DL+        +  +P +  + EF L +A K    L      
Sbjct: 127 AQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLHPEDVLIFEFKLSAALKTQSALRALVRA 186

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                 ++  E      + P+G  +          G     +++T ++++E     L+K 
Sbjct: 187 RRYDGQWRWIEMSATPRYSPDGHFI----------GLTGSSQDVTERLEIELAREQLLKS 236

Query: 436 QGET 439
           +   
Sbjct: 237 ERAA 240



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-----KKNTETEGI 231
           ++ E     ++L+     F +L D L   VW  D  G + + N +Y        +     
Sbjct: 93  DITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTLP 152

Query: 232 VFQKAIGESRKL-FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------N 284
            +   +     L F+ ++   + + SAL             G  +  ++          +
Sbjct: 153 EWSMVLHPEDVLIFEFKLSAALKTQSALRALVRARRY---DGQWRWIEMSATPRYSPDGH 209

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYE 310
             G  G + DV++ + +        +
Sbjct: 210 FIGLTGSSQDVTERLEIELAREQLLK 235


>gi|300864985|ref|ZP_07109816.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337020|emb|CBN54966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1629

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/425 (22%), Positives = 160/425 (37%), Gaps = 33/425 (7%)

Query: 368  QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
              NW++W+  +     S               L + +  +   G + +   L  +   E 
Sbjct: 1231 PRNWQSWEIELLEQITSQ--------------LSIAIQQSELYGQLQI--ELQERQQAEA 1274

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                  +     +D++   V      G +   NP F  L    +  +       N     
Sbjct: 1275 TIREAERRWRSLLDNVQLIVVGLDRWGNVNYVNPFFLKLTGYTQAEVLGKNWFENFL--- 1331

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
              +  +     +F+ ++T             +   + V+ ++   L +    +       
Sbjct: 1332 -PHDQQQALQVVFSEVLTHNYHPYYQNLILTKSGEERVIAWNNTMLQDVDENIIGTISIG 1390

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                ER          K + IKN F+  VS+ELR+PLT I     L+KT        K  
Sbjct: 1391 EDITERQ---------KLEHIKNEFIGIVSHELRTPLTGIQMSLGLIKTGVYDRKPEKAR 1441

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + +E     +  L+NLVNDILDL  +D+G   L  +     DL+ +    I     +  I
Sbjct: 1442 RMIEIALLDTHRLVNLVNDILDLERIDSGRAVLEKTVCKAADLIQQAVDGIQAIATQQQI 1501

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +  I         A    ++Q  + +L NA+ FS   ST+ L A       +F V++ G
Sbjct: 1502 SL--IITPTDVKVWAAPDTIIQTLTNLLGNALKFSPPHSTIHLSAENQADFALFQVRDRG 1559

Query: 728  SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              IP D  + +F RF  V  +   ++ G GLGLSI +S I  HGG + + S     +T  
Sbjct: 1560 RGIPADKLELIFGRFQQVDASDSREKGGTGLGLSICQSIIERHGGKIWVESILGEGSTFF 1619

Query: 786  CRIPS 790
              +P 
Sbjct: 1620 FTLPL 1624



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 87/511 (17%), Positives = 175/511 (34%), Gaps = 62/511 (12%)

Query: 40   PIILLIRQRNSLAKKVNETYSFLSEICDQL-------SKYHSLLTENNCLT-------IV 85
              I L    N+L ++V E    L+++ D+L        + + LL E   L        I 
Sbjct: 539  AQIALKELNNALEQRVIERTVELTKLNDRLLITLLEKDRAYQLLEEQAQLLDLAHDGIIS 598

Query: 86   WDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKAT----EKLRKEG--Q 139
            WD       II   +   ++    T   +F   +K     +  +       +L   G  +
Sbjct: 599  WDINS----IITFWNHGAELMYGWTKAEAFGQEIKALLKTEFPQPLNVIEAQLLATGYWE 654

Query: 140  SFDLVAETQNDCAIKIEGR-VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
              +L+  ++++  I +  R V+      R++ +  I +++++     K L    S  +  
Sbjct: 655  G-ELIHYSRDNSPIAVSSRWVAQKDDLGRLIKVLEINNDISDRKEAAKLLQQSESTLRSF 713

Query: 199  FDSLDFLVWHRD-QAGDIL-----WANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKR 251
            F+S    +   +   GDIL     WA   +  NT       F  ++G S       I   
Sbjct: 714  FNSAVVPMGIVELHDGDILHIADNWAAAQFFHNTTAGMQNQFSSSLGTSPATINRWISYY 773

Query: 252  MISSSALEKNFCETVSTLEHGN----NKSYKIVRVLNSFGEAGIAID-VSKEITVNDQLT 306
              +         E +     G          I    + +      ++ +++     + L 
Sbjct: 774  REAQRTQAPVRFEYLHPTNDGECWLSGTVCPITISPSEYPRFSYIVENITERKLAEEILQ 833

Query: 307  HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
                I+ N T  IA+ ++    Q  N +++       + +  N   + L E L      P
Sbjct: 834  QYQRIISNTTDGIAMMNREYIYQIANPAYLTWCNKSESEVIGNSLRNILGEELFDNFIQP 893

Query: 367  EQLNWKTWKENIFSVYKSSETHKDTWH-LPN--GQTLHVIVTSNPR-----GGTIWMFEN 418
                       +       +   + W   PN   Q L+V  T          G I    +
Sbjct: 894  ----------RLDRCLAGEKIQYERWFDYPNLVPQFLNVTYTPLYDAGENISGVIVSLRD 943

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPG 477
            LT     E     ++++Q     +++EG+ +   D G I  +NP F  ++  +   L+ G
Sbjct: 944  LTQLKQAEQ----MLELQAVITRNMAEGICLVRADNGVIVYANPKFEQMFGYDLGELN-G 998

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFD 508
             H+  +         +     +  A++ + +
Sbjct: 999  QHVSIVNYNSESVSAQEVNQAIRTAVLQNHE 1029



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 91/275 (33%), Gaps = 23/275 (8%)

Query: 294 DVSKEITVNDQLTHTYEILHN------LTVAIA-IFDQNRYLQFHNRSFVELWEIDLAFL 346
           D+S        L  +   L +      + + I  + D +      N +  + +    A +
Sbjct: 692 DISDRKEAAKLLQQSESTLRSFFNSAVVPMGIVELHDGDILHIADNWAAAQFFHNTTAGM 751

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                    L    +          +  +      ++      D     +G    + ++ 
Sbjct: 752 QNQ--FSSSLGTSPATINRWISYYREAQRTQAPVRFEYLHPTNDGECWLSGTVCPITISP 809

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           +      ++ EN+T +   E     +++     I + ++G+A+   +   +++NPA+ + 
Sbjct: 810 SEYPRFSYIVENITERKLAEE----ILQQYQRIISNTTDGIAMMNREYIYQIANPAYLTW 865

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
               E+ +  G  +RNI       ++      L   +        +        L    L
Sbjct: 866 CNKSESEV-IGNSLRNILG--EELFDNFIQPRLDRCLAGEKIQYERWFDYP--NLVPQFL 920

Query: 527 EYSIIPLPNA-----QTMLTFVNVTDSVRAERALT 556
             +  PL +A       +++  ++T   +AE+ L 
Sbjct: 921 NVTYTPLYDAGENISGVIVSLRDLTQLKQAEQMLE 955



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 82/247 (33%), Gaps = 20/247 (8%)

Query: 215  ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
            + W N S    +E  G   +  +GE  +LF   I+ R+    A EK   E      +   
Sbjct: 863  LTWCNKS---ESEVIGNSLRNILGE--ELFDNFIQPRLDRCLAGEKIQYERWFDYPNLVP 917

Query: 275  KSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN-RY 327
            +   +          N  G      D+++       L     I  N+   I +   +   
Sbjct: 918  QFLNVTYTPLYDAGENISGVIVSLRDLTQLKQAEQMLELQAVITRNMAEGICLVRADNGV 977

Query: 328  LQFHNRSFVELWEIDLAFLATNP-SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            + + N  F +++  DL  L     S         SA ++ + +     + + FS Y+   
Sbjct: 978  IVYANPKFEQMFGYDLGELNGQHVSIVNYNSESVSAQEVNQAIRTAVLQNHEFS-YEVQN 1036

Query: 387  THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK------VQGETI 440
              KD        T  V   S      + + +++T+   LE               +   +
Sbjct: 1037 VKKDGTPFWCSATCSVFKHSEYGDVLVAVHQDITLAKHLEEIRQDAEAASLQKSRKENLL 1096

Query: 441  DHLSEGV 447
              +++G+
Sbjct: 1097 WSITQGI 1103



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 79/630 (12%), Positives = 166/630 (26%), Gaps = 143/630 (22%)

Query: 52  AKKVNETYSFLSEICDQL---SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
              + E    ++ +  QL   ++    +  +     +WD    T EI             
Sbjct: 103 TSNLKENRQKIARLNQQLIQENREQLRMALSAARMGMWDWNMVTGEITWSPETEHLFGLA 162

Query: 109 DTDLL----SFENWLKFHHYIKLSKA-TEKLRKEG---QSFDLVAETQNDCAIKIEG--- 157
           D        +F+  L  H    L++A  + L+ +      F L+    +   ++  G   
Sbjct: 163 DGTFDGKYETFDARLHPHDREGLNQARQQALQTKSVYQHEFRLIWPDGSIHWVEGRGHGF 222

Query: 158 --------RVSGSCAFLRILSLDGI--------YSELAETTLKCKK-------LSNHISV 194
                   R++G+   +       I           L E T + ++       L   +  
Sbjct: 223 DDETGKAVRIAGTLVNIDDRKQSEILLHQQFEQQRLLMEMTQRIRQSLNLEDILQTTVEE 282

Query: 195 FKVLFDSLDFLVWHRDQA--GDILW--ANISYKKNTETEGIVF-----------QKAIGE 239
            +        L++  D    G IL    N  +   +                  Q  +  
Sbjct: 283 VRQFLQCDRALIFKTDADYGGKILVESVNPPWNAISSNHSHDPCIGKEYIEPFQQGLVTA 342

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS----------------YKIVRVL 283
              ++  +I        A  +     V  +  G N                   +I  + 
Sbjct: 343 KSDIYTAQISPCHREMLAAFQVRANLVVPILQGKNLWGLLVVHHCAAPREWQTSEIELLR 402

Query: 284 NSFGEAGIAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
               +A IAI  +     V  +      + +     I I D+   +   N  F E+    
Sbjct: 403 QLSAQASIAIQKADLFEQVKTESLRIQTVFNTSFDGIVILDREGKVLEANPRFSEMLGYT 462

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
                +    D                 +   ++ +     +S   +      +G    V
Sbjct: 463 PEKTLSLNVFDW-----------DAHFTFDEVQKFLTDTSFTSGVFETRHRRQDGSIYDV 511

Query: 403 IVTSNPRG--GTIWMF---ENLTVQVDLETKYNT-------------------------- 431
            + +N     G I  F    ++T +   +                               
Sbjct: 512 EIGTNILEWQGEIMRFCACRDITERKQAQIALKELNNALEQRVIERTVELTKLNDRLLIT 571

Query: 432 ---------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                    L++ Q + +D   +G+  +  +  I   N     ++   +           
Sbjct: 572 LLEKDRAYQLLEEQAQLLDLAHDGIISWDINSIITFWNHGAELMYGWTK----------- 620

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL---ELLSDSVLEYSIIPLPNAQTM 539
                     E+ G ++ A + T F      ++  L         ++ YS    P A + 
Sbjct: 621 ---------AEAFGQEIKALLKTEFPQPLNVIEAQLLATGYWEGELIHYSRDNSPIAVSS 671

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIK 569
                  D  R  + L   N+   + +  K
Sbjct: 672 RWVAQKDDLGRLIKVLEINNDISDRKEAAK 701



 Score = 44.9 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 13/194 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           + DL  +  T         +   +G+ +   +G++  +NP F  +      +        
Sbjct: 414 KADLFEQVKTESLRIQTVFNTSFDGIVILDREGKVLEANPRFSEMLGYTPEKTLSLNVFD 473

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A        +      F + +      R+        +  ++LE+             
Sbjct: 474 WDAHFTFDEVQKFLTDTSFTSGVFETRHRRQDGSIYDVEIGTNILEWQ----GEIMRFCA 529

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T+  +A+ AL E N AL +    +   +  ++  L            LL+  +   
Sbjct: 530 CRDITERKQAQIALKELNNALEQRVIERTVELTKLNDRL---------LITLLEKDRAYQ 580

Query: 602 LNSKQSQYVEYISA 615
           L  +Q+Q ++    
Sbjct: 581 LLEEQAQLLDLAHD 594



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
              E T+ +       +L N+ + +   D+   + + N  F++L     A +      +  
Sbjct: 1271 QAEATIREAERRWRSLLDNVQLIVVGLDRWGNVNYVNPFFLKLTGYTQAEVLGKNWFENF 1330

Query: 356  L--EFLRSANKLPEQL---NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
            L  +  ++   +  ++   N+  + +N+  + KS E     W   N   L  +  +    
Sbjct: 1331 LPHDQQQALQVVFSEVLTHNYHPYYQNLI-LTKSGEERVIAW---NNTMLQDVDEN--II 1384

Query: 411  GTIWMFENLTVQVDLETKYNTLV 433
            GTI + E++T +  LE   N  +
Sbjct: 1385 GTISIGEDITERQKLEHIKNEFI 1407


>gi|160936746|ref|ZP_02084113.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440537|gb|EDP18282.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1070

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/723 (16%), Positives = 269/723 (37%), Gaps = 70/723 (9%)

Query: 121 FHHYIKLSKATEKLRKEGQ---SFDLVAETQNDCAI-----------KIEGRVSGSCAFL 166
              Y  L K+    R  G+   S  +   T + C++            ++G         
Sbjct: 77  PEGYQALEKSVRDARANGEKGNSICVRLVTSDGCSLWVKLQAAFTDEYVDGYQVAYTTLT 136

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            +  +     E   T    +++ +   +   +   +       D+    +WAN  Y +  
Sbjct: 137 DVTEMMEAQLEQEHTQQTLEQMVHEQEMLMSIL-KVSVSKHMVDEHYTCVWANEYYYQLI 195

Query: 227 ETEGIVFQKAIGESRKLFK-------EEIKKRMISSSALEKNFCETVSTL--EHGNNKSY 277
                 ++         +        E++   +       K+  + ++ +  E G++   
Sbjct: 196 GYPKEKYESLFHNHPDEYYQNNPEGWEQLTATVADVLENGKDQYDIITRMKHEDGSSFWV 255

Query: 278 KIVRVLNSFGEAGIA------IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
           K+          G        +DV++ + + ++       +  ++V++ + D++  L + 
Sbjct: 256 KLFSYFTDEYIDGYRSTYTVMMDVTELVQMKNEQEMLMRAME-VSVSLHLVDKHFTLVWA 314

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKD 390
           N  + +L       +  + +  E L          E  N W    E +  + ++ +   +
Sbjct: 315 NDFYYDL-------IGYSKTEYETLFHNHCDEYFAENKNSWNKIHEKVQEITEAGKRSYE 367

Query: 391 TW---HLPNGQTLHVIVTS-----NPRGGTIW--MFENLTV--QVDLETKYNTLVKVQGE 438
            +    +P+G T  V +T         G  +      ++T   Q+  E        + G 
Sbjct: 368 LFVPLRIPDGSTRWVKMTGFFTDEYQDGKQMAYTTMVDVTELMQIQQEKAV-AYDNIPGF 426

Query: 439 TIDH--LSEGVAVFGPDGRIK-LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
            + H  L + + +     RI  + N     L   +   +      R +       + +  
Sbjct: 427 IVKHRILPDKIVMADASDRITDIFNVDTGKLDSFDIYSVLEPES-RTMIEASHESFRQGK 485

Query: 496 GWDLFAAIITSFDDERK-SLQGT-LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            +D    +   +  ER  S+  T ++ ++D  +  ++  +         V        + 
Sbjct: 486 PFDGTICLRDRYTRERWFSIHSTCIDSIADDPVYLTVF-IDVTDVTELRVMQKKLTEQKT 544

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  EA + A+  K+ F+  +S++LR+PL  I G   ++K+        +     + I
Sbjct: 545 ALQDALEAAKHANRAKSDFLSRMSHDLRTPLNAIQGMARIIKSHVYDP--ERVLDSTDKI 602

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +L++L+N++LD + V++G M L    + L +L+  V   +  ++ E N+R K  +
Sbjct: 603 MLSNDLLISLINEVLDTSKVESGQMLLAEEEVNLAELVQGVVNMVQPQLGEKNLRFKTYA 662

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNN 726
           +     + V+D QRL Q+   +LSNA+ ++ +G ++ L+      +      + F V + 
Sbjct: 663 NRITHETVVSDLQRLQQLLLNLLSNAVKYTPEGGSITLEINEKPSEQTDMAYYEFVVSDT 722

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +  +    VF  F           +G GLG+SI +    L GG + + S+    +  
Sbjct: 723 GIGMKPEFLARVFEPFERADDAKIQAVQGTGLGMSICKKIAELMGGTIEVESTYGKGSRF 782

Query: 785 NCR 787
              
Sbjct: 783 TVS 785


>gi|116328548|ref|YP_798268.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116121292|gb|ABJ79335.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1023

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/516 (23%), Positives = 211/516 (40%), Gaps = 46/516 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +  T+ +Q  +   I+ NL   I   ++N  L   N  F    +    F  +  S    
Sbjct: 242 EQAATIMEQEANLNAIIENLEAMIWSINKNYELLIFNSQFQNAMQ---DFYHSEIS---- 294

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRG--- 410
           L F     +LP    ++ WKE  +    S E        P  +G  +   ++ +P     
Sbjct: 295 LGFNVLQKELP-PKVFEYWKE-FYDRALSGEKFSVAGKRPNQDGTFVFSELSFHPIRNAE 352

Query: 411 ----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G   +  ++T +   E K+  L        +  SE   ++   G I   NPA   +
Sbjct: 353 YEITGVSAVSVDITDKKSAEEKFKLL-------FERSSEPHVLYDDSG-IFECNPATLKM 404

Query: 467 WKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            +  + +   G H I   A   +    E      F +I  S +    + +   +  +   
Sbjct: 405 LRCSDKKFVLGKHPIHFSAEIQADGRIEKKMMSEFESI--SLNKGSYTFEWVYKRFNGEE 462

Query: 526 L--EYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
              E ++IP+  +Q    +  +  +T+    E +L    E+   A + K  F+  +S+E+
Sbjct: 463 FSTEVTLIPIIISQKRVFLSVWHEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEI 522

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  +IG   LL+ + LG   ++Q +Y++ I +S   LL L+NDILDL+ +++G + L
Sbjct: 523 RTPLNGVIGTVSLLEGTSLG---AEQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTL 579

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
               + L  L +EV         E  + I+      +    ++D  RL QI + +L N++
Sbjct: 580 EMQPVSLKKLTSEVINLFRPMAEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSI 639

Query: 700 DFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
            F+ KG  V+LK   +         IF VK+ G  I E+  + +F  F        R   
Sbjct: 640 KFTEKG-KVLLKVEAEKFPNNKFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYG 698

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+I +    L  G + + S     +     I
Sbjct: 699 GSGLGLTISKKLAELMKGEIIVKSQVNQGSEFTLSI 734


>gi|332667142|ref|YP_004449930.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335956|gb|AEE53057.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 1099

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 9/273 (3%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           SD ++  + + L    T+   +     ++  R    + E  + ++  K+ F+ ++S+E+R
Sbjct: 682 SDGMIRIAYV-LWTLSTLGLMLITAYYIKQLREDQAEKEKAQASERAKHQFLANMSHEIR 740

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I G TD+L      +    Q +Y+E I  SS  LL ++NDILD++ ++AG ++L 
Sbjct: 741 TPMNAIKGMTDILLRR---NPKDDQKEYLEGIKQSSDSLLIIINDILDISKIEAGKVELE 797

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                + +L+N V   +  K  E  + +      +  +   D  RL QI   ++ NA+ F
Sbjct: 798 NEPFSVVELVNNVHTIMQFKAEEKGLELLKDIPEENLTVQGDATRLRQILLNLIGNAIKF 857

Query: 702 SSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGL 756
           + KG       +  +G+     F + + G  I +D    +F  F         +  G GL
Sbjct: 858 TEKGVVTTSVKSEQSGEKVNVHFIISDTGIGIDQDRMDKIFKSFEQAYSDTSRKFGGTGL 917

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI +  + LHGG + + S     +  +  IP
Sbjct: 918 GLSISKKLVELHGGKIWVESEKGKGSQFHFTIP 950


>gi|265764264|ref|ZP_06092832.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256872|gb|EEZ28218.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1022

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/641 (16%), Positives = 257/641 (40%), Gaps = 62/641 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKNTETEGIVFQKAIGE 239
                +L     + + + +S+   +  +D       ++ N    +   T       ++  
Sbjct: 253 RKNNTELQRRKLLQENILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSV-- 310

Query: 240 SRKLFKEEIKKRMISSS----ALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAI 293
                  E  +RM  +        K +      +   + +SY   + + +   G   + +
Sbjct: 311 ----LDSEQAERMQKTDLEVFTTGKPYFGVERIILK-DGRSYDTIVRKNIIYDGTKRLLL 365

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIA-----IFDQNRYLQFHNRSF-------VELWEI 341
           ++  +  + + L    ++L ++++ +       ++ ++        F       +E+   
Sbjct: 366 NIRWDQKLQNDLKRRAKVL-SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALEINSF 424

Query: 342 DLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +      +P + +  ++ + +  K     +   W     +  + +  ++  W    G   
Sbjct: 425 EKFAECVHPDDRQRFVDTMDAVLK----QDSGEWDIEYRADLRGNGNYE--WWKTRGVLE 478

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE-------TKYNTLVKVQGETIDHLSEGVAVFGPD 453
             I+  +P      M  ++      E        K N L++     +++ + G+A    D
Sbjct: 479 TSILNDHPYQYVSGMSISIESYKQTELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTD 538

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             ++  N +  S   + E         +    +     +  D   L   +++   ++ K 
Sbjct: 539 YVVQWENVSVCSSSLSFEAYKRGECCYK----SAHNRTSPCDNCVLSKVLVSRQMEKIK- 593

Query: 514 LQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                 L ++ ++E    P+ N        ++   ++TD  R    L +      ++D++
Sbjct: 594 ----FHLENNRIVEVLATPVFNESEEIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKL 649

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+DLL  S+      +   Y++ I+ ++ +LL L+NDIL
Sbjct: 650 KSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEE---YMQIINTNNELLLKLINDIL 706

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ +++G ++L Y    L +  + +  S+  ++    +++  ++   +     D+ R+ 
Sbjct: 707 DLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVA 766

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ +  ++NA+ ++ +G T+ +     +      V++ G  IPE+  + VF+RF      
Sbjct: 767 QVVTNYVTNAIKYTPQG-TIEMGYEVVDAGIRLYVRDTGIGIPEEKKRKVFHRFEKLDEF 825

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G GLGLSI ++     GG V   S     +     +P
Sbjct: 826 AQ--GTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864



 Score = 37.6 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 55/164 (33%), Gaps = 16/164 (9%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFLATNPSND-----ELLE 357
                 I  NL V + ++D + YL   N   +++  +      L  N   +     E+  
Sbjct: 12  HRLQQTIYENLPVGMELYDGDGYLIEINSVGLKMMGVKDKQDMLGINIFENPNIPVEMKR 71

Query: 358 FLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWM 415
            LR+   +   + +     +  +    S  ++ +        T+ V++  N      +++
Sbjct: 72  RLRAGENIRFTVKYDFDLAKAHYPTVLSGISYFEI-------TVSVVLDENKEIDKFLFI 124

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +++T  V  +       +     +      +  F    R+  +
Sbjct: 125 AQDVTEAVHTQEILRQSKQKTALAMQAAEVMLWEFDVRTRLFYA 168


>gi|116331277|ref|YP_800995.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124966|gb|ABJ76237.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1023

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/516 (23%), Positives = 211/516 (40%), Gaps = 46/516 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +  T+ +Q  +   I+ NL   I   ++N  L   N  F    +    F  +  S    
Sbjct: 242 EQAATIMEQEANLNAIIENLEAMIWSINKNYELLIFNSQFQNAMQ---DFYHSEIS---- 294

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRG--- 410
           L F     +LP    ++ WKE  +    S E        P  +G  +   ++ +P     
Sbjct: 295 LGFNVLQKELP-PKVFEYWKE-FYDRALSGEKFSVAGKRPNQDGTFVFSELSFHPIRNAE 352

Query: 411 ----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G   +  ++T +   E K+  L        +  SE   ++   G I   NPA   +
Sbjct: 353 YEITGVSAVSVDITDKKSAEEKFKLL-------FERSSEPHVLYDDSG-IFECNPATLKM 404

Query: 467 WKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            +  + +   G H I   A   +    E      F +I  S +    + +   +  +   
Sbjct: 405 LRCSDKKFVLGKHPIHFSAEIQADGRIEKKMMSEFESI--SLNKGSYTFEWVYKRFNGEE 462

Query: 526 L--EYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
              E ++IP+  +Q    +  +  +T+    E +L    E+   A + K  F+  +S+E+
Sbjct: 463 FSTEVTLIPIIISQKRVFLSVWHEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEI 522

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  +IG   LL+ + LG   ++Q +Y++ I +S   LL L+NDILDL+ +++G + L
Sbjct: 523 RTPLNGVIGTVSLLEGTSLG---AEQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTL 579

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
               + L  L +EV         E  + I+      +    ++D  RL QI + +L N++
Sbjct: 580 EMQPVSLKKLTSEVINLFRPMAEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSI 639

Query: 700 DFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
            F+ KG  V+LK   +         IF VK+ G  I E+  + +F  F        R   
Sbjct: 640 KFTEKG-KVLLKVEAEKFPNNKFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYG 698

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+I +    L  G + + S     +     I
Sbjct: 699 GSGLGLTISKKLAELMKGEIIVKSQVNQGSEFTLSI 734


>gi|16330151|ref|NP_440879.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652639|dbj|BAA17559.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 998

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 153/345 (44%), Gaps = 15/345 (4%)

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++NP       T +             A  S         + F  ++ +  ++ K ++ 
Sbjct: 490 RVANPLLTLAKITTDIPTKMQYQGLTPIALRSEVSEVITLNENFNEMLITLQNQFKIIKQ 549

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             + L   V E +   +   + +     + +  R E  L E  E+   A+ +K+ F+ ++
Sbjct: 550 AKDNLEMRVAERTHTLIVINKQLA--GEIEERQRIEIKLREAKESAELANRVKSEFLANI 607

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  I+GF DLL    L    S+  +Y+  I +SS ILL L++DILD++ ++AG
Sbjct: 608 SHEIRTPMNAILGFCDLLLQKDLSL--SQTKKYLNAIGSSSKILLALIDDILDISKIEAG 665

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695
            + ++   + L  ++ E+KQ    K    ++ + +  D  L  +   D  RL QI   ++
Sbjct: 666 KLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLV 725

Query: 696 SNAMDFSSKGST-VILKAA----RDNGDFI---FSVKNNGSSIPEDMCKSVFNRFV--SN 745
            NA+ F+ +G   + +       R  G +I     V + G  I  +    +F+ F     
Sbjct: 726 GNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQG 785

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGL+I      L GG +S+SS     +T     P+
Sbjct: 786 QSTRKYGGTGLGLTITRRLTALLGGEISLSSRLGEGSTFILHFPA 830


>gi|330881741|gb|EGH15890.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 554

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 8/370 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIR 481
           + E       +     I+ + + G+     +G +   N     +    E   +     + 
Sbjct: 35  ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVF 94

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   C ++ + +          T  +  R+   G+    S  +                
Sbjct: 95  YLPEECPQHPDMALREATVNGRYTE-ESWRRRKDGSRFWASVVITAQYDGNDELRGFSKI 153

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S
Sbjct: 154 TRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS 213

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++  
Sbjct: 214 ----QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPM 269

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + NI +K +         VADRQRL+Q+   +LSNA+ ++     V ++  + +    
Sbjct: 270 AADANIELKALPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVT 329

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++   
Sbjct: 330 VSVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAE 389

Query: 781 VTTINCRIPS 790
                  +P 
Sbjct: 390 GCRFILELPL 399


>gi|298377088|ref|ZP_06987042.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266072|gb|EFI07731.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 769

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 164/383 (42%), Gaps = 29/383 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           ++ +  +   L +     +   +    ++   + R++ +N          +  +      
Sbjct: 395 ELQIARQAQDLNQKYQLVLKASNMMTWIWDVKEARLECNN------IYLTQRSIRDKGTD 448

Query: 481 RNIAATCSRYY---NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL---- 533
                +   +Y   +  D   +  AI      E  S+   +  L D+ LEY+ I +    
Sbjct: 449 GQFCMSADEFYSGIHPEDLEQMQDAINKLIAGESISIDEEIRYLDDTGLEYTWIEIFAIV 508

Query: 534 -------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                    A        +    + E+ L    E + +++ +K++F+ ++S+E+R+PL  
Sbjct: 509 GKTDPEGKPAYLTGGTTLINQRKKMEQELR-DKEKIEESNRLKSAFLANMSHEIRTPLNA 567

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL  +     + +  ++ E I  ++ +LL LVNDILDL+ ++AG M   YS   
Sbjct: 568 IVGFSNLLAETCH---SEETREFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFN 624

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++ L   + Q+  +++ +  + +      +     +++ RL Q+ +  L+NA  F+ +GS
Sbjct: 625 VSTLFRSLYQTFQSRVKD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS 683

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            + +          F VK+ G  I       VF RF       Q  G GLGLSI ++ + 
Sbjct: 684 -IRMGYKEREDGLYFYVKDTGKGIERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILE 740

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
              G + + S +   +T    IP
Sbjct: 741 NLHGKIGVESEEGKGSTFWFTIP 763


>gi|303248510|ref|ZP_07334768.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490130|gb|EFL50050.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1066

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/383 (22%), Positives = 159/383 (41%), Gaps = 28/383 (7%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +    T +  + G+A+ GPDGR    N     +          G   + I       
Sbjct: 543 ASERRFQATFELAAVGIALVGPDGRWLRVNNKLCDILG-YPCEALLGMTFQQITHPDDLD 601

Query: 491 YNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
            +      + A  + +++ E++ +   G+   ++ +V             +    ++   
Sbjct: 602 ADMGKVRQVLAGNLNTYNREKRYIRKDGSFVWVNLTVALVRDAAGQPDYFISVIEDIDRR 661

Query: 549 VRAERALTEKNEALRKADE--------------IKNSFVQHVSYELRSPLTNIIGFTDLL 594
            RAE AL    + L +A E               K+SF+ ++S+E+R+PL  ++G   LL
Sbjct: 662 KRAEEALLRSRDELARAAEQAKQLASRAEAASLAKSSFLANMSHEIRTPLNGLMGMMQLL 721

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           KT+   +L+ +Q QY +    S   L  L+ DILDL+ ++A  + L+ +   L D+   +
Sbjct: 722 KTT---ALDDEQLQYADMAIRSGGRLTRLLGDILDLSRIEAARLTLHVAPFSLADVFAAI 778

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---- 709
            ++ A    E  + +  +++  L    + D  RL QI   +  NAM F+  G   +    
Sbjct: 779 TETFAPLALEKGLPLVCLANPDLPRNVIGDETRLRQILFNLAGNAMKFTVAGEVRVEGWS 838

Query: 710 -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
            L         +F+V + G  IP+D   +V   F          ++G GLGL+I      
Sbjct: 839 LLPLPDGRARLLFAVSDTGVGIPDDKLDAVGEAFTQVESTYTRDQQGAGLGLAICRELTR 898

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L GG ++I S     TT+   +P
Sbjct: 899 LMGGSLTIESELGVGTTVWLMLP 921



 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 5/241 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   +T   E  R+ D +K +F  +VS+ELR+PLT I+G   L K         +  +  
Sbjct: 132 ANEEITRLYEQTRELDALKTNFFANVSHELRTPLTLILG--SLAKRLGAAETPPEARRDY 189

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  ++ +LL  V D+LD+A +DAG M+L Y+   +      +     +   E  I + 
Sbjct: 190 RVMERNAKLLLAHVTDLLDVARLDAGRMELRYARCDMARQARFMASCFESLARERGISLT 249

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V +   L + V D +++ +I   +LSNA  F+  G  V ++ AR +G F  +V ++G  I
Sbjct: 250 VDAPRALTAEV-DVEKVRRILQNLLSNAFKFTPDGGRVEMRLARTDGHFRLTVADDGPGI 308

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P+D  + VF RF            G GLGL+I + F  LHGG V+++++  G       +
Sbjct: 309 PDDQKQVVFERFRQLDSGENRSHGGTGLGLAIAKEFALLHGGDVTLTTNPAGGAVFTVTL 368

Query: 789 P 789
           P
Sbjct: 369 P 369


>gi|323692287|ref|ZP_08106527.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503662|gb|EGB19484.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1107

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/537 (21%), Positives = 211/537 (39%), Gaps = 59/537 (10%)

Query: 297 KEITVNDQLTHTYEILHNL----TVAIAIF--DQNRYLQFHNRSFVELWEIDLAFLATNP 350
           K      ++  T + L  L       I  F  D N  L   NR   E +     F +   
Sbjct: 300 KIEKAGREVERTAKFLTQLYNTVPCGILQFTTDPNHRLVSVNRMAWEFYG----FASEAE 355

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---- 406
              E++        L + ++W        +++    ++       +G+ + V VT     
Sbjct: 356 YRSEVITPF--QMVLGKDMDWVLKTAESLTLWGDVASYTRESQKKDGKPVWVNVTMGRIV 413

Query: 407 NPRGGTI--WMFENLTV--QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           N  G  +   +F ++T   ++++E++   L++ Q      L   +    P   I   N  
Sbjct: 414 NADGEEVIQAVFTDITEVRRIEIESERQRLIENQ-----SLRAAICTAYP--LIMRINLT 466

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWDLFAAIITSFDDERKSLQGTLE 519
                   E + S             RY  E   S   + ++++ +     +K  +G  E
Sbjct: 467 QDYYECFVEEQDSYTIDRSGSYDELFRYGAERVYSAYREDYSSLFSRETIMKKFAEGERE 526

Query: 520 LLSD--------------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-----LTEKNE 560
           +  +              S L Y   P+      +  + V D+ RAE A     L +   
Sbjct: 527 IYLEYRQKGMDEEYHWISSHLIYVDNPVNGDMIAIRMIKVLDAQRAEMAKQEQLLRDALA 586

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A + A+  K+ F+  +S+++R+P+  IIG + + K      +  +     + I  SS  L
Sbjct: 587 AAKAANSAKSDFLSRMSHDIRTPMNAIIGMSTIGKLKMEDPV--RVRDCFDKIDTSSRYL 644

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGS 679
           L+L+NDILD++ ++ G M L        +++ E+   I  +  E  I  ++   D     
Sbjct: 645 LSLINDILDMSKIETGKMTLTNEPFDFIEMIAELNSIIFPQSLERGIDYEIHHKDPLERC 704

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIF--SVKNNGSSIPEDM 734
           ++ D  RL QI   +LSNA+ F++ G  +  +   +   NG  IF  SV + G  +  + 
Sbjct: 705 YIGDSLRLKQILMNLLSNAVKFTAPGGKIRTEIEEEKRINGFAIFKISVSDTGIGMTPEF 764

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + ++  F          + G GLGLSIV + +NL GG +   S     +    R+P
Sbjct: 765 LEKLYQPFEQETLDSARNKIGSGLGLSIVYNLVNLMGGDIKAESRKGHGSRFTVRLP 821


>gi|78186516|ref|YP_374559.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78166418|gb|ABB23516.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 596

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 142/366 (38%), Gaps = 23/366 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K +   +        + E + V      I L NP+   +++                  
Sbjct: 241 RKMSRSEEWYRAVFSGIREAIVVTDAACDIILLNPSASRMFRLSGAMFQSRPLT------ 294

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                 +S    L   +  S     K     + +     ++ S +P+         V V 
Sbjct: 295 ---MLGDSGLCALIEGVHRSRTAVLKEELAVMTVKGVRTMQVSSMPVVRDGEFDGSVFVL 351

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +   R L          + I+  FV  VS+ELR+PLT+I G+ + L    +      Q
Sbjct: 352 NDITRLRNL----------ERIRRDFVSSVSHELRTPLTSIRGYAETLLDGAMNDPEHAQ 401

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + ++  I   S  L  LVND+LDL+ +++G ++  Y  + L+ ++    + +     +  
Sbjct: 402 A-FLRIILQESEQLTALVNDVLDLSKIESGRIEYTYGPVDLSRVVEHSMEMLRPAFEKKE 460

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKN 725
           ++ ++     L    AD   L  +   +L NA+ +   G   V  +A R      F V++
Sbjct: 461 VKFELSIPPGLPPVQADEAYLGIVIRNLLDNAVKYVDAGTGKVRFRAFRTGDSVQFDVED 520

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NGS I     + +F RF        R   G GLGLSIV+  +  H G + + S     +T
Sbjct: 521 NGSGIAHQDLERIFERFYRVDKARSRQLGGTGLGLSIVKHIVLSHKGDIKVRSRLNRGST 580

Query: 784 INCRIP 789
            +  +P
Sbjct: 581 FSVTLP 586


>gi|254227454|ref|ZP_04920886.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262396281|ref|YP_003288134.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|151940066|gb|EDN58892.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262339875|gb|ACY53669.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 631

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 24/299 (8%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--------------VRAERALTE 557
           + L   L+LLS +V ++S   +P+  T+       +                  +  L E
Sbjct: 173 RLLVNPLQLLSGAVSDFSGGKVPSKVTLPKRWCFDEVSVLAEKYNRSVEKVREHQTELEE 232

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +    A+  K+ F+  +S+E+R+P+  IIG   LL  +K   L+ +Q ++VE I +SS
Sbjct: 233 ERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLGDTK---LDPQQKEFVEIIDSSS 289

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ +++DILD + V+AG ++L   +  L  +L++V      K  + N+++    D  L
Sbjct: 290 HSLMTIIDDILDFSKVEAGKVELENVSYDLRRILDDVISLHTVKAKQKNLQLLSDIDPHL 349

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF---IFSVKNNGSSIPE 732
                 D  RL Q+ + +LSNA+ F+ +G   ++++  R   D     F V ++G  I +
Sbjct: 350 PAEVQGDAARLKQVLNNLLSNAIKFTDRGHVKLLVELTRQEHDVAMIRFRVVDSGIGIAK 409

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  +++F RF        R   G GLGL+I    +NL GG + ++S     +     IP
Sbjct: 410 ENQQAIFERFQQADGSTTRKYGGTGLGLAIGAQLVNLMGGEIQLTSELGLGSCFEFSIP 468


>gi|262195164|ref|YP_003266373.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078511|gb|ACY14480.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 650

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/521 (22%), Positives = 203/521 (38%), Gaps = 60/521 (11%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNR-YLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +++ +LT  YE+L +    + +FD     + + N+  + +W  D          DELL  
Sbjct: 4   SISQELTAAYELLAH---PLWVFDVETLSMVWANQPGLRMWRAD--------DLDELL-- 50

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL------PNGQTLHVIVTSNPRGGT 412
            R       +   +     +    +  E  ++ W L      P      +       G T
Sbjct: 51  ARDYAADISEAAQRRLMGTLHRCLQ-GERIRERWTLYPLEDTPVTVDCGLAAVPLEDGRT 109

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
             +   + VQ     +     +   ET+ HL   V+ F   G +   NPA  S +  E+ 
Sbjct: 110 ALLISGMPVQAS---EIAAENQRGLETLRHLPLAVSRFDAGGALVFQNPAAASAFGPED- 165

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
               G H R +     R +  +   +  A  I       ++  G  E   D  L     P
Sbjct: 166 ----GPHARLLERFADREHGAAALREARAGAIVRTQTRLRTGAG--ERWHDVELRQGRDP 219

Query: 533 LPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           +     +     ++++  +AE  L    E    A  +K+ F+  +S+E+R+PL  IIGF 
Sbjct: 220 VTGKPLLLFMAGDISELKQAEAELRAAKEQAEAAARVKSEFLATISHEMRTPLHGIIGFG 279

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLL  S    L+ +Q  +++ +  S+ +L  L++D+LDLA ++AG M      + L  L+
Sbjct: 280 DLLAHSH---LDPQQRGFLDSLRESARLLFRLISDVLDLAQIEAGRMHFEDRAMDLEALI 336

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V+  IA +  E  + ++   D +L      D  R+ Q+   +L NA+ F+  G  V L
Sbjct: 337 ARVRDVIAFQAAEKRLVLEAQLDPELPRHLRGDALRIEQVLVNLLGNALKFTPAG-RVSL 395

Query: 711 KAAR---------------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +                        D     F V++ G  I  D    +F  F       
Sbjct: 396 RVRCVPECAGEDALECASAAGRCLGDVHRLRFEVRDTGVGISSDRLNILFEPFTQLDTSA 455

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            R   G GLGL+I +  +   GG + ++S+    +     +
Sbjct: 456 SRAIGGSGLGLAICKRLVEGMGGVIGVASTPGKGSCFWFEL 496



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/347 (12%), Positives = 101/347 (29%), Gaps = 28/347 (8%)

Query: 195 FKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
               ++ L   +W  D +   ++WAN    +    + +    A   +  + +   ++ M 
Sbjct: 9   LTAAYELLAHPLWVFDVETLSMVWANQPGLRMWRADDLDELLARDYAADISEAAQRRLMG 68

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI-----------TVN 302
           +     +         E       +   V    G A + ++  +              + 
Sbjct: 69  TLHRCLQGERIR----ERWTLYPLEDTPVTVDCGLAAVPLEDGRTALLISGMPVQASEIA 124

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            +     E L +L +A++ FD    L F N +    +  +         +  LLE     
Sbjct: 125 AENQRGLETLRHLPLAVSRFDAGGALVFQNPAAASAFGPEDG------PHARLLERFADR 178

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
                 L        + +  +      + WH    +     VT  P    ++M  +++  
Sbjct: 179 EHGAAALREARAGAIVRTQTRLRTGAGERWHDVELRQGRDPVTGKPL--LLFMAGDISEL 236

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA----FRSLWKTEENRLSPGT 478
              E +     +         SE +A    + R  L          +    +  +     
Sbjct: 237 KQAEAELRAAKEQAEAAARVKSEFLATISHEMRTPLHGIIGFGDLLAHSHLDPQQRGFLD 296

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            +R  A    R  ++        A    F+D    L+  +  + D +
Sbjct: 297 SLRESARLLFRLISDVLDLAQIEAGRMHFEDRAMDLEALIARVRDVI 343



 Score = 38.8 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 71/273 (26%), Gaps = 26/273 (9%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           ++   ++  +++            L   V   D  G +++ N +       E     + +
Sbjct: 113 ISGMPVQASEIAAENQRGLETLRHLPLAVSRFDAGGALVFQNPAAASAFGPEDGPHARLL 172

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG------I 291
                    E     +  +                  + + +          G      +
Sbjct: 173 ER---FADREHGAAALREARAGAIVRTQTRLRTGAGERWHDVELRQGRDPVTGKPLLLFM 229

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A D+S+      +L    E             Q          F  L  I          
Sbjct: 230 AGDISELKQAEAELRAAKE-------------QAEAAARVKSEF--LATISHEMRTPLHG 274

Query: 352 NDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
                + L  ++  P+Q  +  + +E+   +++      D   +  G+ +H    +    
Sbjct: 275 IIGFGDLLAHSHLDPQQRGFLDSLRESARLLFRLISDVLDLAQIEAGR-MHFEDRAMDLE 333

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
             I    ++      E +     ++  E   HL
Sbjct: 334 ALIARVRDVIAFQAAEKRLVLEAQLDPELPRHL 366


>gi|153005523|ref|YP_001379848.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029096|gb|ABS26864.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 979

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/512 (21%), Positives = 191/512 (37%), Gaps = 46/512 (8%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L     A+ I D+   +   N     L+      L  +P    + E  R+A+  P   N
Sbjct: 15  VLDAAPDAMVITDRVGRMVVVNSEAERLFGYGSGELLGSPVETLIPERFRTAH--PHHRN 72

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-----ENLTVQVDL 425
                     +  +           +G      ++ +P      MF      ++TV+  L
Sbjct: 73  RYFLDPRTRPMGGAGGVELFGL-RKDGTEFPAEISLSPLETEDGMFAITAIRDVTVRRKL 131

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E+    L       ++   + + +    G++ L N     L+      L  G  +  +  
Sbjct: 132 ESHTKAL-------LEAAPDAMVIADRRGKVLLVNAQAERLFGYTREELL-GQRVEALIP 183

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQTM---LT 541
              R  + +     F              L G  +  ++   E S+ PL  A  +     
Sbjct: 184 PRFRAAHPAHRTRYFDEPRPRPMGAGGLELYGLRKDGTEFPAEISLSPLETADGLLAITA 243

Query: 542 FVNVTDSVRAER--------------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             +V +  RAE                L    +  ++ + +K  F  +VS+ELR+PL  I
Sbjct: 244 IRDVAERKRAEEDRARLHAQLQATLEELGAAYDKSQQLERLKTQFFANVSHELRTPLALI 303

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  D L  S L        + VE I+ ++  L   VND+LD+A ++AG M L  S + +
Sbjct: 304 LGPADELLASDLPPGP---RRDVEVIARNARTLAKHVNDLLDVAKLEAGKMALELSDVDV 360

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             L+  V            +   V +   L + V D  +L ++   +LSNA  F+ +   
Sbjct: 361 AQLVRLVAAHFDALAASREMAYSVEAPATLAARV-DPDKLQRVVFNLLSNAFKFTPEAGK 419

Query: 708 VILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           V      +        D    V ++G  +P    ++VF RF        RR  G GLGL+
Sbjct: 420 VRCTLRVEPEGAGSAPDLAIEVADSGPGVPPAERETVFARFTRGDDDTARRVGGTGLGLA 479

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I   F+ LHGG +++  + EG    +  +P +
Sbjct: 480 ITRDFVELHGGRIALGEAPEGGAIFSVHLPLR 511



 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 3/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +   A        E   +A  +K +F++ VS+ELR+PLT +      L       L   Q
Sbjct: 702 ELEAALEVTRLAKEEAERASAVKTNFLRLVSHELRTPLTTLHLQLQRLTRDTEHPLEPHQ 761

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V   S ++T L  LV  +L  A + +G + +    + L  L+ +V +       +  
Sbjct: 762 REIVRRGSFAATRLTGLVEALLHEAQLASGRLSVAVEDVDLGALVAKVVEEHRPLADDKG 821

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +++ +   +     + + L  I S ++ NA+ F++ G  V +       +    V+++
Sbjct: 822 LALRLRARDHVPWVETEPRFLKLILSNLVGNAVKFTAAG-VVEVGVEGRGDELRVEVRDS 880

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    VF  F       ++   G+GLGL++V       G  V +SSS    +T 
Sbjct: 881 GPGIAAEDRARVFEPFERGVRVAEQFVPGLGLGLAVVRDLAAAIGATVELSSSSSAGSTF 940

Query: 785 NCRIPSKE 792
              +P ++
Sbjct: 941 TVTLPRRQ 948



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 79/275 (28%), Gaps = 35/275 (12%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
           FK + D+    +   D+ G ++  N   ++     G    + +G   +    E + R   
Sbjct: 12  FKPVLDAAPDAMVITDRVGRMVVVNSEAERLF---GYGSGELLGSPVETLIPE-RFRTAH 67

Query: 255 SSALEKNFCETVSTLEHG-----------NNKSY--KIVRVLNSFGEAGIAIDVSKEITV 301
                + F +  +    G           +   +  +I        +   AI   +++TV
Sbjct: 68  PHHRNRYFLDPRTRPMGGAGGVELFGLRKDGTEFPAEISLSPLETEDGMFAITAIRDVTV 127

Query: 302 NDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
             +L    + +L     A+ I D+   +   N     L+      L        +    R
Sbjct: 128 RRKLESHTKALLEAAPDAMVIADRRGKVLLVNAQAERLFGYTREELLGQRVEALIPPRFR 187

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL----PNGQTLHVIVTSNPRGG----- 411
           +A+           +   F   +          L     +G      ++ +P        
Sbjct: 188 AAH--------PAHRTRYFDEPRPRPMGAGGLELYGLRKDGTEFPAEISLSPLETADGLL 239

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            I    ++  +   E     L      T++ L   
Sbjct: 240 AITAIRDVAERKRAEEDRARLHAQLQATLEELGAA 274


>gi|289583646|ref|YP_003482056.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289533144|gb|ADD07494.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 792

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/801 (14%), Positives = 265/801 (33%), Gaps = 101/801 (12%)

Query: 63  SEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFH 122
            +  + L +  +LL          D +     I   +       + D         L+  
Sbjct: 16  RDETEALQRSLALLNNVAEGIFQLDTEGRFIAINDSITDITGYTRDDLRGEHVSVLLEEA 75

Query: 123 HYIKLSKATEKLRKEG----------QSFDLVAETQNDCAIKIEGRV--------SGSCA 164
              +L +                     F+L  ET +   ++ E R+        +G   
Sbjct: 76  DVTRLEREIRTQHDASGGPNTGNVPDTPFNLTIETASGNPVRCELRINLPADDGTTGGIV 135

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + + +++               +         + D  D  V+  D+A D++W N + + 
Sbjct: 136 GV-VRTVEAHDQTNDPLP----SVWETHEAISSVIDEADVGVFVLDEAFDVVWINETIE- 189

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL--------------EKNFCETVSTLE 270
             E  G+   + +G  +    +E  +   + S                 + F   +   +
Sbjct: 190 --EYFGVDRTEIVGRDKATLIQETIRDRFADSETFVETALATYEDNTYVEQFECQILAAD 247

Query: 271 HGNNKSYKIVRVLNSFGEAG--------------IAIDVSKE--ITVNDQLTHTYEILHN 314
           +   +  +        G                  A  VS+E    +  +   T +IL  
Sbjct: 248 NREERWLEHRSRPIESGHYAGGRVELYYDISDRKTAERVSQERKERLRQEHNLTEQILET 307

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           + V IA+ +++  +   N    +L E      +      E+ +       + E+   +  
Sbjct: 308 VPVGIAVVNRDGSVARANERMTDLLEFPPNSKSYTTDQQEMYDENGEFLPVEERPVPR-- 365

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLET 427
              +F   +     +     P+GQ   + V + P           +    ++T   +L  
Sbjct: 366 ---VFETGEPVIDQEIRLTKPDGQRQWLSVNARPIADEQGDPKRVLETATDITDLKELSK 422

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +    +  + + +  +         D     + P  + + +          H     A  
Sbjct: 423 RRKRALDEREKELAAMQ-----LATDLLESRAEPVDQFIDEFVTILPQFFKHPEQTDARV 477

Query: 488 SRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           S         D+ A   T  D++    +      ++ + +  S++      T  +     
Sbjct: 478 S-------IDDVVATTGTGGDEQIADRITAHTSTINGTPIAISVVHQEAETTEKSITRTE 530

Query: 547 DSVRAERAL--------------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             ++ E+ L               E  + L+++++    F    S++L+ PL  +  +  
Sbjct: 531 GFLQEEQELIETLALLLKLHLDRQEYIDGLQRSNKRLEQFAYAASHDLQEPLRMVSSYLQ 590

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L++      L++   +++EY    +  +  +++ +L  + V++      +  + L+D+L 
Sbjct: 591 LIEQRYADKLDADGEEFLEYAVDGAERMRAMIDGLLQYSRVESRGEP--FEAVDLDDVLA 648

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
           +V   +   + E++  I       L +   D  +L Q+F  ++ NA+++S      V + 
Sbjct: 649 DVLNDLRLSIDEHDANITSDL---LPTVKGDASQLRQVFQNLIDNALEYSGDDPPRVHVT 705

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           A R    +  +V + G  I  +    VF  F     R +  G G+GL++    I  HGG 
Sbjct: 706 AERTGDRWQVTVSDEGIGIDPEDADRVFEVFQRLHTRDEHAGTGIGLALCRRIIERHGGE 765

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S     T  +  +P  E
Sbjct: 766 IQVESEPGEGTAFSFTLPVLE 786


>gi|323487564|ref|ZP_08092856.1| two-component system sensor histidine kinase [Clostridium symbiosum
           WAL-14163]
 gi|323399121|gb|EGA91527.1| two-component system sensor histidine kinase [Clostridium symbiosum
           WAL-14163]
          Length = 1107

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 117/538 (21%), Positives = 210/538 (39%), Gaps = 61/538 (11%)

Query: 297 KEITVNDQLTHTYEILHNL----TVAIAIF--DQNRYLQFHNRSFVELWEIDLAFLATNP 350
           K      ++  T + L  L       I  F  D N  L   NR   E +     F +   
Sbjct: 300 KIEKAGREVERTAKFLTQLYNTVPCGILQFTTDPNHRLVSVNRMAWEFYG----FASEAE 355

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---- 406
              E++        L + ++W        +++    ++       +G+ + V VT     
Sbjct: 356 YRSEVITPF--QMVLGKDMDWVLKTAESLTLWGDVASYTRESQKKDGKPVWVNVTMGRIV 413

Query: 407 NPRGGTI--WMFENLTV--QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           N  G  +   +F ++T   ++++E++   L++ Q      L   +    P   I   N  
Sbjct: 414 NADGEEVIQAVFTDITEVRRIEIESERQRLIENQ-----SLRAAICTAYP--LIMKINLT 466

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNE-------SDGWDLFAA--IITSFDD---- 509
                   E + S             RY  E        D   LF+   I+  F D    
Sbjct: 467 QDYYECFVEEQDSYTIDRSGSYDELFRYGAERVYSAYREDYSSLFSRETIMKKFADGERE 526

Query: 510 -----ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-----LTEKN 559
                 +K +      +S  ++ Y   P+      +  + V D+ RAE A     L +  
Sbjct: 527 IYLEYRQKGMDEEYHWISSHLI-YVDNPVNGDMIAIRMIKVLDAQRAEMAKQEQLLRDAL 585

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            A + A+  K+ F+  +S+++R+P+  IIG + + K      +  +     + I  SS  
Sbjct: 586 AAAKAANSAKSDFLSRMSHDIRTPMNAIIGMSTIGKLKMEDPV--RVRDCFDKIDTSSRY 643

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLG 678
           LL+L+NDILD++ ++ G M L        +++ E+   I  +  E  I  ++   D    
Sbjct: 644 LLSLINDILDMSKIETGKMTLTNEPFDFIEMIAELNSIIFPQSLERGIDYEIHHKDPLER 703

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIF--SVKNNGSSIPED 733
            ++ D  RL QI   +LSNA+ F++ G  +  +   +   NG  IF  SV + G  +  +
Sbjct: 704 CYIGDSLRLKQILMNLLSNAVKFTAPGGKIRTEIEEEKRINGFAIFKISVSDTGIGMTPE 763

Query: 734 MCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + ++  F          + G GLGLSIV + +NL GG +   S     +    R+P
Sbjct: 764 FLEKLYQPFEQETLDSARNKIGSGLGLSIVYNLVNLMGGDIKAESRKGHGSRFTVRLP 821


>gi|84386181|ref|ZP_00989210.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
 gi|84378951|gb|EAP95805.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
          Length = 809

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 127/257 (49%), Gaps = 15/257 (5%)

Query: 542 FVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +    + +R + + L +  +    A+  K+ F+ ++S+E+R+P+  IIG + LL      
Sbjct: 215 YNQSVERIRQQYQELEKAKDVAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM--- 271

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +  +Q +YV+ ++ SS  LL+L+NDILD + ++AG ++L    + +  +  +V+ +   
Sbjct: 272 DMPKEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
           K  +  +R ++  D K+    + D  +L Q+ + ++ NA+ F+  G  V L    +    
Sbjct: 332 KAEQKGLRFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEHGH-VTLSLRLEEVIE 390

Query: 718 -----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                   F V ++G  I ED  +SVF++F        R   G GLGL+I +  + L G 
Sbjct: 391 PEQKLRVKFEVTDSGIGIAEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGS 450

Query: 771 HVSISSSDEGVTTINCR 787
            + ++S     +T    
Sbjct: 451 KLELTSVVGKGSTFYFT 467


>gi|315125188|ref|YP_004067191.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013701|gb|ADT67039.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 1117

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/560 (19%), Positives = 224/560 (40%), Gaps = 85/560 (15%)

Query: 297 KEITVNDQLTHTYEILHNLTV-AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           K +    +     E++ NL       F+  +   F +    +++E     L   P   E 
Sbjct: 285 KILNREQESERMLEVMSNLAQVGAWSFNLEKKHVFWSDMTKKIFEYP---LDEQPKWSEN 341

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTS---NPRG 410
           L + +      E  + +   + +    K  E+++    +   NGQ +  +V     +  G
Sbjct: 342 LNYFK------EGESREKIAKLVERAIKHGESYETELEVINANGQPVWALVHGEAEHKNG 395

Query: 411 GTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHL--SEGVAVFGPDGRI--------- 456
             + +F   +N+  +  +E +   + +   ET+  L  S+ +     +G++         
Sbjct: 396 RCVRIFGSLQNIDARKKVELENRKIAR-FNETLASLTVSDEIL----NGKLSQSKELITQ 450

Query: 457 -----KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI----ITSF 507
                   N A   L+  +  +L          +  +  + +    D F AI    I   
Sbjct: 451 SICQALEVNCASIKLFNQQRTQLIQFASFNRSGSENNIPWLQETIPDFFTAIERKAIFCV 510

Query: 508 DDERKS------LQGTLELLSDSVLEYSIIPLPNA--------QTMLTFVNVTD------ 547
           DD ++        +  L+  S   +   +IP  +         Q ++   +  +      
Sbjct: 511 DDAQQHPYLAPIKESYLQPFSVKTMLCVLIPASSGSIGIVCAEQDIVRTWSHNEESFLIA 570

Query: 548 -------------SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                         +  E  L +  EA  +A   K+ F+  +S+E+R+P+  ++G  +++
Sbjct: 571 VGALIGSLYSSQQRIETEAQLVKAKEAAEQAVIAKSEFLASMSHEIRTPMNGVLGMLNIV 630

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K ++   L+ +Q  +++   +S+  LL ++NDILD + ++AG + +      L  LL EV
Sbjct: 631 KATQ---LDQQQKHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPRLLGEV 687

Query: 655 KQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---L 710
            +S A K  +NN  + + +       F++D  RL QI S ++ NA+ F+  G  ++   +
Sbjct: 688 VESFALKAEQNNTTLILDATHITSSEFISDPNRLRQILSNLIGNAVKFTQNGEILVTAKI 747

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               D      ++ ++G  I  +    +F+ F        R   G GLGL+IV+    L 
Sbjct: 748 THTLDATVLECAIADSGIGISAEKQPHLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELM 807

Query: 769 GGHVSISSSDEGVTTINCRI 788
            G V++SS+    +T +  I
Sbjct: 808 SGEVNVSSTPNKGSTFSFFI 827


>gi|206602092|gb|EDZ38574.1| Putative multi-sensor signal transduction histidine kinase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 453

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 163/384 (42%), Gaps = 25/384 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           GT+ ++ +   + +   K           +DH+ EGV V    G+I L N AF   +K E
Sbjct: 82  GTVRLYRD---REEASRKLKEASSRFAAVMDHMEEGVVVTDLKGKILLVNRAFFRFFKVE 138

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            +             +      ++   DL   ++ +    +K +  +    + +      
Sbjct: 139 GDVR---------GESFGLLARKTGINDLIEDVLQNRRSVQKEVTFSETTPARTWSLVGT 189

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               + +T +  +           L      +R+ + I+  FV +VS+E+R+PLT+I GF
Sbjct: 190 TARGSGETDVFGIF----------LLFDLTDIRQLERIRKDFVANVSHEIRTPLTSIRGF 239

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + L    +        ++   I + +  L N+V+D+L L+ ++ G   + Y ++ L+  
Sbjct: 240 AEALHDGGIND-PKTAREFSGIILSHAERLGNIVSDLLHLSELETGKAIMRYGSVSLSRQ 298

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +  ++   A    +  IR  V    +  ++  D  ++  +   ++ NA+ ++ +G  V  
Sbjct: 299 IAHIRDVYADHARKKGIRFIVQLPEETLTYETDEGKMDLVLGNLVDNALKYTPEGGEVFF 358

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
              R+    +F V+++G  IP      +F RF        R   G GLGLSIV   + + 
Sbjct: 359 GGWREGDAIVFEVRDSGVGIPRTEVDRIFERFYRVDRARSREMGGTGLGLSIVRHILEIL 418

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
            G V ++SS    +T   R+PS+E
Sbjct: 419 QGTVRVTSSPGQGSTFLVRVPSRE 442



 Score = 41.5 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 8/143 (5%)

Query: 286 FGEAGIAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            G   +  D  +    + +  +    ++ ++   + + D    +   NR+F   ++++  
Sbjct: 81  EGTVRLYRDREEASRKLKEASSRFAAVMDHMEEGVVVTDLKGKILLVNRAFFRFFKVEGD 140

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                 S   L       + + + L  +  +     V  S  T   TW L  G T     
Sbjct: 141 --VRGESFGLLARKTGINDLIEDVLQNR--RSVQKEVTFSETTPARTWSL-VGTTARGSG 195

Query: 405 TSNPRGGTIWMFENLTVQVDLET 427
            ++  G  I++  +LT    LE 
Sbjct: 196 ETDVFG--IFLLFDLTDIRQLER 216


>gi|160937188|ref|ZP_02084550.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613]
 gi|158439752|gb|EDP17501.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613]
          Length = 1236

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/600 (19%), Positives = 219/600 (36%), Gaps = 49/600 (8%)

Query: 221  SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS-SALEKNFCETVSTLEHGNNKSYKI 279
            ++     T  +  ++      +   E  +    +    LE +    +     G    +K+
Sbjct: 498  AFFTGISTLILDEKERRDYMNRFLNEPTRAAFQAGKRELELDCFIRLPKDVRGRYVKFKV 557

Query: 280  VRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
              V          I    D++++      L       ++L     I D + +  F     
Sbjct: 558  NLVEEPDTGDITGILTVYDITEQTIAERNLKKLSTSGYDL-----IADVDLFHDFCTILS 612

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW---KTWKENIFSVYKSSETHKDTW 392
                + DL   +   S  E L ++     +P+           E I    K  + +  ++
Sbjct: 613  GRFTKDDLCAKSGRHS--ERLAYMMERQLVPKDRPRIMKMLEPEYILERLKQEDPYSLSY 670

Query: 393  HLPNG------QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             +         + L V  T    G       ++T  V    +   L+ V   T + L  G
Sbjct: 671  SILGEAGEIQTKKLTVSATDLRLGRVCLARADITDSV---REQQGLLNVVAYTFEML--G 725

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF--AAII 504
            +   G       ++ A   + +     +     + +I    +    E +    F    ++
Sbjct: 726  IIHLGSRHITLYTHQAVLQVLEPRRASIDSW--LADIKKKYAPKGGEEEVERCFGLQNML 783

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-----VNVTDSVRAERA----L 555
               ++        L  L ++ + Y  I +               +VT+++ AER     L
Sbjct: 784  ARLEERPGGYDFVLPYLEENQIRYKQINILWGDGDHKMICIVRQDVTETMTAERRSKETL 843

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             +      +A+  K+ F+  +S+++R+P+  I+G T L +         K    +  I+ 
Sbjct: 844  EQALALAEEANRAKSDFLSSMSHDIRTPMNAIMGMTTLARAHL--DEREKVENCLRKITL 901

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            SS  LL+L+NDILD++ ++   + LN   + L+DLL ++   I  +  E  ++  V +  
Sbjct: 902  SSRHLLSLINDILDMSKIEQSKITLNNDKVFLSDLLEQLYSIIGQQAQEAGLQFDVRTSN 961

Query: 676  KL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKNNG 727
             +   F  D  R+ QI   IL NA+ F+  G TV                 + F++++ G
Sbjct: 962  IIHPYFYGDALRINQILINILGNAVKFTPDGGTVTFLTEELPTIKGPGYVRYCFTIRDTG 1021

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              +PE     +F  F  N +     G GLGLSI +  I L GG + + S +   TT    
Sbjct: 1022 IGMPESFLSHLFEPFTRNRNTEHVEGSGLGLSITKGLIELMGGELLVESRERAGTTFRVE 1081


>gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1]
 gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1]
          Length = 1039

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 145/316 (45%), Gaps = 28/316 (8%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           RN++   S   NE    D+         DE       +E L++   E             
Sbjct: 310 RNLSLVLSYLENEKSTGDIPLTARIGGKDELSRFAREVERLTNEQQE------------- 356

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +  + + A+ A     E   +A + K+SF+ ++S+E+R+PL  +IG +++L  +   
Sbjct: 357 ---SQRNLLEAKNAAEHAKENAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT--- 410

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L + Q  YV+ I  SS +LL+L+NDILD + +++G++++N  +  + + + ++   +A 
Sbjct: 411 DLTATQKDYVDTIETSSQLLLSLINDILDFSKIESGMLQINPHSTSIRETIYDIASIVAP 470

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
           K+ E  I + V  D  +    +AD  R+ Q+    +SNA+ F+ KGS V +         
Sbjct: 471 KVKEKGIELNVDIDQNVPFRVLADDHRMRQVLMNFMSNAVKFTDKGS-VTIGVHYQGESN 529

Query: 718 ---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                +F V+++G  I ++    +F  F        R   G GLGL+I    I L GG +
Sbjct: 530 NMASLMFEVQDSGIGIDKERQSKIFEAFAQEDDSTTRQFGGTGLGLAISTQLIELMGGEI 589

Query: 773 SISSSDEGVTTINCRI 788
            + S     +     +
Sbjct: 590 QLDSVKGVGSRFYFTL 605


>gi|119469670|ref|ZP_01612539.1| putative sensor protein [Alteromonadales bacterium TW-7]
 gi|119446917|gb|EAW28188.1| putative sensor protein [Alteromonadales bacterium TW-7]
          Length = 1118

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 134/251 (53%), Gaps = 9/251 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +    + AE+ L E  E   +A   K+ F+  +S+E+R+P+  ++G  +++K +K   L
Sbjct: 581 HSSQQRIEAEQELVEAKELAEQAVAAKSEFLATMSHEIRTPMNGVLGMLNIIKQTK---L 637

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q+ ++E   +S+  LLN++NDILD + ++AG + ++     L  LL EV +S A K+
Sbjct: 638 DQQQAHHIELAQSSAESLLNIINDILDFSKMEAGKLNIDSIQFNLPKLLGEVVESFALKV 697

Query: 663 HENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            +NN ++ + +    +   ++D  RL QI + ++ NA+ F+  G  +I+    D+ D   
Sbjct: 698 EQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVIIIARVDDSTDGAF 757

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              SV + G  I ++   S+FN F        R   G GLGL+IV+    L  G V+++S
Sbjct: 758 LECSVIDTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMDGSVNVNS 817

Query: 777 SDEGVTTINCR 787
            +   +T +  
Sbjct: 818 VEGEGSTFSFS 828


>gi|60682125|ref|YP_212269.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493559|emb|CAH08347.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1022

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/641 (16%), Positives = 256/641 (39%), Gaps = 62/641 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKNTETEGIVFQKAIGE 239
                +L     + + + +S+   +  +D       ++ N    +   T       ++  
Sbjct: 253 RKNNTELQRRKLLQENILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSV-- 310

Query: 240 SRKLFKEEIKKRMISSS----ALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAI 293
                  E  +RM  +        K +      +   + +SY   + + +   G   + +
Sbjct: 311 ----LDSEQAERMQKTDLEVFTTGKPYFGVERIILK-DGRSYDTIVRKNIIYDGTKRLLL 365

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIA-----IFDQNRYLQFHNRSF-------VELWEI 341
           ++  +  + +      ++L ++++ +       ++ ++        F       +++   
Sbjct: 366 NIRWDQKLQNDFKRRAKVL-SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDINSF 424

Query: 342 DLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +      +P + +  ++ + +  K     +   W     +  + +  ++  W    G   
Sbjct: 425 EKFAECVHPDDRQRFVDTMDAVLK----QDSGEWDIEYRADLRRNGNYE--WWKTRGVLE 478

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLE-------TKYNTLVKVQGETIDHLSEGVAVFGPD 453
             I+  +P      M  ++      E        K N L++     +++ + G+A    D
Sbjct: 479 TSILNDHPYQYVSGMSISIESYKQTELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTD 538

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             ++  N +  S   + E         +    +     +  D   L   +++   ++ K 
Sbjct: 539 YVVQWENVSVCSSSLSFEAYKRGECCYK----SAHNRTSPCDNCVLSKVLVSRQMEKIK- 593

Query: 514 LQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                 L ++ ++E    P+ N        ++   ++TD  R    L +      ++D++
Sbjct: 594 ----FHLENNRIVEVLATPVFNESEEIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKL 649

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF+DLL  S+      +   Y++ I+ ++ +LL L+NDIL
Sbjct: 650 KSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEE---YMQIINTNNELLLKLINDIL 706

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ +++G ++L Y    L +  + +  S+  ++    +++  ++   +     D+ R+ 
Sbjct: 707 DLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVA 766

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ +  ++NA+ ++ +G T+ +     +      V++ G  IPE+  + VF+RF      
Sbjct: 767 QVVTNYVTNAIKYTPQG-TIEMGYEVVDAGIRLYVRDTGIGIPEEKKRKVFHRFEKLDEF 825

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q  G GLGLSI ++     GG V   S     +     +P
Sbjct: 826 AQ--GTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864



 Score = 37.6 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 55/164 (33%), Gaps = 16/164 (9%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFLATNPSND-----ELLE 357
                 I  NL V + ++D + YL   N   +++  +      L  N   +     E+  
Sbjct: 12  HRLQQTIYENLPVGMELYDGDGYLIEINSVGLKMMGVKDKQDMLGINIFENPNIPVEMKR 71

Query: 358 FLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWM 415
            LR+   +   + +     +  +    S  ++ +        T+ V++  N      +++
Sbjct: 72  RLRAGENIRFTVKYDFDLAKAHYPTVLSGISYFEI-------TVSVVLDENKEIDKFLFI 124

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +++T  V  +       +     +      +  F    R+  +
Sbjct: 125 AQDVTEAVHTQEILRQSKQKTALAMQAAEVMLWEFDVRTRLFYA 168


>gi|295087894|emb|CBK69417.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 869

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 210/505 (41%), Gaps = 25/505 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---LAFLATNPSNDE 354
           +  + +Q      + H++   +  +D + ++ F NRS +++  +                
Sbjct: 373 QNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNRSLLQMLHLPYESGGRFYEGMMAGS 432

Query: 355 LLEFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +   +     + + +Q+  K     I       E H D +   +G+ + +        
Sbjct: 433 IFKIYYNGQDILHSMLKQVAAKGESVKIPQGAFMKEVHSDKYFPVSGEIVPIRSKDT-IT 491

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLS--NPAFRSLW 467
           G      N++ +   +  ++  V            E      P G +K    + +  ++ 
Sbjct: 492 GMALSARNISNEEMQKRFFDMAVDESSIYPWQFDMETNCFIFPQGFLKRLGYDESVTTIS 551

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + E +R      ++ I+   +R     D          + + E +  +    +++    +
Sbjct: 552 RDEMDRTIHPDDLKEISPLFNRALTGEDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQD 611

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      +    ++     AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I
Sbjct: 612 ------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAI 665

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF+DLL  +  G  + + +Q++  I+ +  +LL L+NDILDL+ +++G M+  ++   L
Sbjct: 666 VGFSDLLSDTS-GFTSEEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNL 724

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL  V  S    M    + + + + +        D  RL Q+ + +++NA  F+S G 
Sbjct: 725 PLLLKTVHDSQRLNMPP-GVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG- 782

Query: 707 TVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            +      D   G     V++ G  I E+  + +F RF    +  Q  G GLGLSI ++ 
Sbjct: 783 FITFGYEDDEVPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTI 840

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I    G +S++S     T    R+P
Sbjct: 841 IERLNGTISVTSEVGKGTRFTVRLP 865


>gi|156741626|ref|YP_001431755.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232954|gb|ABU57737.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 906

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 22/249 (8%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++AD +K  F+  VS+ELR+PL  IIGF+ ++     G +   Q + ++ I+ +   LL+
Sbjct: 624 QEADRLKGQFLAAVSHELRTPLNAIIGFSTVMLDEIDGPITPLQREDLKIINRNGRFLLH 683

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++++LDLA ++AG + L  + + +  L+ EV +++   +H   I + ++   +L     
Sbjct: 684 LIDELLDLARIEAGKIDLELAPLDMRALIVEVTETVQGLLHNRQIALNLLLPERLPYACG 743

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS----------------------TVILKAARDNGDFI 720
           D  R+ Q+   +LSNA+ F+ +GS                       ++    R +    
Sbjct: 744 DAARIRQVLLNLLSNAVKFTPQGSITVSARCVAAPENHPGATGSGAVIVRNGQRLHPYIA 803

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV++ G  I  +    +F  F       ++ G GLGL+I    I  HGG + + S    
Sbjct: 804 VSVRDTGIGIAAEDLTRIFEAFNQVRSGNRQHGSGLGLAISRRLIEAHGGRIWVESEPGK 863

Query: 781 VTTINCRIP 789
            +     +P
Sbjct: 864 GSVFTFILP 872


>gi|163847652|ref|YP_001635696.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525511|ref|YP_002569982.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668941|gb|ABY35307.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449390|gb|ACM53656.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 876

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 127/274 (46%), Gaps = 11/274 (4%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S++ L      L         R    L    E  + AD  K+ F+  +S+ELR+PL  II
Sbjct: 589 SMVGLTIENVQLYNDLEQQVARRTEELRVALERAQLADRRKSDFLASISHELRTPLNAII 648

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+ +L       L   Q + ++ I+ +   LL+L+N++LDLA ++AG + L  S + L 
Sbjct: 649 GFSTVLLDDTDQPLTPTQREDIQSINRNGRFLLHLINELLDLARIEAGHLNLEISNVNLY 708

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           ++ +EV  ++ T +    + ++      L    AD  RL QI   +LSNA+ F+ +G T+
Sbjct: 709 NITSEVCDTVQTLLRNRPVTLRNAVPVTLPDIAADGDRLRQILFNLLSNAIKFTERG-TI 767

Query: 709 ILKAARDNG---------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGL 758
            + A   +              SV + G  IP +    +FN FV    R  R  G GLGL
Sbjct: 768 TVSARVHDEVNEDGKVGRYVAVSVSDTGIGIPLERQHEIFNEFVQIHGRRSRLSGTGLGL 827

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I    +   GG + + S+    +T    IP  +
Sbjct: 828 AITRKLVLAQGGRIWVDSTPGIGSTFTFTIPVAQ 861


>gi|319781102|ref|YP_004140578.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 779

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 15/311 (4%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R  N+     +   + T+ DDER     + + L   +L  S I       +  ++     
Sbjct: 154 RNQNDLFAQPMLVRVRTAMDDERHLADASSDRL---LLWASGILFAALAIVAFWIFRPME 210

Query: 549 VRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           V   RA  E  E+L KA   D  K+ F+ ++S+E+R+P+  ++G  +LL  +    L  +
Sbjct: 211 VAIRRAFAESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKT---DLTPR 267

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  + + I  S   LL ++NDILD + ++AG + L+ +   L++ + +V   ++ ++ E 
Sbjct: 268 QKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEK 327

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIF 721
           N+ + V  D +L    V D  R  QI + +L NA+ F+ KG   + +     N       
Sbjct: 328 NLELIVRVDPRLPAHVVGDAGRFRQIITNLLGNAVKFTEKGHVLIDVGGEIVNDVVQLKI 387

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  IP +  ++VF +F        RR  G GLGL+I    ++L  G + + S   
Sbjct: 388 RVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVESEIG 447

Query: 780 GVTTINCRIPS 790
             +     +P 
Sbjct: 448 RGSVFWFAVPL 458


>gi|148378339|ref|YP_001252880.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
 gi|148287823|emb|CAL81889.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 615

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 173/391 (44%), Gaps = 16/391 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + +  N   Q +++ +    + ++ E      I +  + + V    G+I  +N   + + 
Sbjct: 198 VNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILV-HRYGKIIFANERLKQML 256

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLF---AAIITSFDDERKSLQGTLELLSDS 524
             ++        I+++         ++   +L+     ++    +   + + T++  S  
Sbjct: 257 GYKKEYNFEDIDIKSLIPKDEYNTVKNKLENLYYGSENVVNFQHNVINNKEKTIQNTSTY 316

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELR 581
           V+ Y  +P   +  +    +     + E+ + +  E L +    +++   F+ ++S+EL+
Sbjct: 317 VI-YDGMPTIFS-ILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHELK 374

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I     LL   +      KQ +Y++ I  +   L+ L+N++LD   +D+G ++LN
Sbjct: 375 TPLNVIFTAVQLLDFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLRLN 434

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +  L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSNA+ F
Sbjct: 435 LVNYNIVSLIEEITLSVTSYAESKGINIIFDTEMEERVIAVDTDKIERIILNLLSNAIKF 494

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           ++ G  + +       +    +K+ G  IP D  +S+F RF          + G G+GL 
Sbjct: 495 TNPGGNIFVNIKDSEENVYVHIKDTGVGIPSDKLESIFERFFQIDKTLKKNKEGTGIGLH 554

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +V+SF+ +H G V+I+S     T    ++P+
Sbjct: 555 LVKSFVEMHNGKVTINSELGKGTEFIIKLPA 585


>gi|313636361|gb|EFS02143.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           S4-171]
          Length = 591

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 154/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINADKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIDATFETKTMQQKEIILYFPREMILDASVSPILAEDGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +    +  
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EALL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N  T+ ++D++++  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKN 462

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I++           +  +R +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IQVSAPEKTIPPVIIETNRDQLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|313631990|gb|EFR99108.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           N1-067]
          Length = 591

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 154/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINADKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIDATFETKTMQQKEIILYFPREMILDASVSPILAEDGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +    +  
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EALL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N  T+ ++D++++  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKN 462

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I++           +  +R +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IQVSAPEKTIPPVIIETNRDQLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 802

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 153/374 (40%), Gaps = 22/374 (5%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             ++          GV +      +  SN  F  +    E   S          T  R+ 
Sbjct: 4   QERIFSSIFMDAPVGVVILSSSDEVLFSNKLFCDIIGKTELPPSTKFSSFLEEWTDERFL 63

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD---S 548
           +  D      +   + +   +   G++     ++          A      V   D    
Sbjct: 64  DYLDEIAASVSGSGAKEMRYRRDDGSVSWWRLNISNLRPKDSVGADAKRYVVFAEDISLR 123

Query: 549 VRAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              E+ L E  E+  +A E        K+ F+ ++S+E+R+P+  IIG ++LL  +   +
Sbjct: 124 KLYEQELREAKESSERAQEAAERATRTKSEFLANMSHEIRTPIHTIIGMSELLSET---A 180

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q +Y E I   + +LL+L+NDILD + ++AG + L   T  L D   +    ++ +
Sbjct: 181 LDPEQQEYTEQIQFGADVLLSLINDILDFSKIEAGKLSLETITFDLYDTAEDAVDMVSLE 240

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--- 717
            H+  +   V  +  +    + D  RL QI   + +NA+ F+ KG  V L+ + D+    
Sbjct: 241 AHKKGLETIVYIENDVPHLLLGDPIRLRQIIVNLFNNAVKFTEKGE-VELRISLDDRSDG 299

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                F V++ G  I E+  +++F  F        R   G GLGLSI ++   + GG + 
Sbjct: 300 KVRLRFQVRDTGIGIAEEKVQNLFRVFTQVDSSTTRKYGGTGLGLSISKNLSEMMGGRIG 359

Query: 774 ISSSDEGVTTINCR 787
           + S +   +     
Sbjct: 360 VESRESVGSNFWFT 373



 Score = 37.6 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 46/147 (31%), Gaps = 13/147 (8%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEIDLAF----LATNPSNDEL 355
           DQ      I  +  V + I   +  + F N+ F ++    E+  +          +++  
Sbjct: 3   DQERIFSSIFMDAPVGVVILSSSDEVLFSNKLFCDIIGKTELPPSTKFSSFLEEWTDERF 62

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L++L     +   ++    KE     Y+  +     W L                  +  
Sbjct: 63  LDYLDE---IAASVSGSGAKEM---RYRRDDGSVSWWRLNISNLRPKDSVGADAKRYVVF 116

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDH 442
            E+++++   E +     +      + 
Sbjct: 117 AEDISLRKLYEQELREAKESSERAQEA 143


>gi|251795843|ref|YP_003010574.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543469|gb|ACT00488.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 147/337 (43%), Gaps = 21/337 (6%)

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +     +  +    S     S    L   +   F     ++ G +E+  + +L  S + 
Sbjct: 381 PIEYEDRLEAVIEFASLESFTSQHLKLMEEVEKDFGIAVNNVAGRMEV--ERLLSESQVL 438

Query: 533 LPNAQTMLTFVNVTDSVRAERAL----------------TEKNEALRKADEIKNSFVQHV 576
               Q     + +T     E+ L                 + +E L K+ + K++F+ ++
Sbjct: 439 TEELQMQQEEMRMTTEHLEEQYLVAEQKTKELEKAKEELEDYSEQLEKSSQYKSNFLANM 498

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +I+  + LL  ++  +LN  +  Y + I  S T LL L++DILDL+ ++AG
Sbjct: 499 SHELRTPLNSILILSQLLAENENHTLNEDEEGYAKVIHTSGTDLLKLIDDILDLSKIEAG 558

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKIL 695
            + L    + L ++   +K +      +  +   +     L +    D QRL QI   +L
Sbjct: 559 KVILTVDEVNLTEIPELMKLTFNPIAEKRGVGFAIDMAESLPAVWYTDGQRLQQILKNLL 618

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
           SNA  F+ +GS  +     D+G    SV + G  IP+D  K +F  F     +  R   G
Sbjct: 619 SNAFKFTEQGSVRLGFDYTDDGMLAISVTDTGIGIPKDKQKLIFEAFQQVDGKTNRIYGG 678

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGLSI   F+ L GG + + S+    +     +P 
Sbjct: 679 TGLGLSICNEFVKLLGGSIQLDSTLGEGSCFTVYLPL 715


>gi|37524900|ref|NP_928244.1| sensor protein BarA [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784326|emb|CAE13203.1| Sensor protein BarA [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 775

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  + A  IK  F+ ++S+ELR+PL  +IGFT   + +    L  +Q++Y+  I
Sbjct: 277 ELAIAKKRAQDAARIKTEFLANMSHELRTPLNGVIGFT---RQTLKTPLTIQQTEYLYII 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++NDILD + ++A  + L     +L D ++EV   +       NI++    
Sbjct: 334 ERSANHLLNIINDILDFSRLEADKLVLENVPFLLQDTIDEVMVLLTLSAKSKNIQLTHHV 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
           D ++ +  V D  RL QIF+ I+ NA+ F+ +GS  + +   +          +V + G 
Sbjct: 394 DPQIPNLVVGDPTRLQQIFTNIIGNAIKFTDQGSVEIKINLLQQKHHKINLEITVSDTGI 453

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +    +F  F     +      G GLGL I    I   GG++S +S  +  +    
Sbjct: 454 GISPEQQPHLFQAFHQANASISRHYGGTGLGLVITRKLIQEMGGNISFTSEPKKGSVFRF 513

Query: 787 RI 788
            +
Sbjct: 514 DL 515


>gi|219849497|ref|YP_002463930.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543756|gb|ACL25494.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 875

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 126/262 (48%), Gaps = 13/262 (4%)

Query: 543 VNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            N  +   A+R   L    E  + AD  K+ F+  +S+ELR+PL  IIGF+ +L      
Sbjct: 600 YNELERQVAQRTEELRAALERAQLADRRKSDFLASISHELRTPLNAIIGFSTVLLDDTEQ 659

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q + V+ I+ +   LL+L+N++LDLA ++AG + L   ++ L  +  EV  ++ T
Sbjct: 660 PLTPTQREDVQSINRNGRFLLHLINELLDLARIEAGHLNLELGSVDLCQVTAEVCDTVQT 719

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----D 715
            +    + ++      L   VAD  RL QI   +LSNA+ F+ +G T+ + A       +
Sbjct: 720 LLRNRPVTLRNALPMVLPDVVADSDRLRQILFNLLSNAIKFTERG-TITVSAQVLDEVNE 778

Query: 716 NGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGG 770
           +G        SV + G  IP +  + +F  FV    R  R  G GLGL+I    +   GG
Sbjct: 779 DGKLCRYVAVSVSDTGIGIPHERQQDIFGEFVQIHGRRSRLGGTGLGLAITRKLVEAQGG 838

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            + + S     +T    +P  +
Sbjct: 839 RIWVDSIPGIGSTFTFTLPVAQ 860


>gi|150019295|ref|YP_001311549.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905760|gb|ABR36593.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 568

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 158/385 (41%), Gaps = 18/385 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +        K            + +S+ + +   +G I   N     L+    + L  G 
Sbjct: 155 IDELKQTNKKLKKSEVYLSTIFNSVSDAILIHDFNGIIVNVNDTANRLYGYLHDEL-IGM 213

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS------DSVLEYSIIP 532
            I++I +  S Y      +D    +I      + +   TLE +S      +  +E +   
Sbjct: 214 SIKDIISKNSPYI-----YDDILKLINDRKKNKINTPVTLEAISIDKNHKEFWVESNSRA 268

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +   +       V D    +    +  E   + ++++  F  ++S+ELR+PL  I+G   
Sbjct: 269 IIFNEQKAIIATVRDITERKNTELKSKEEALELEKLRTEFFANISHELRTPLNIILGVIQ 328

Query: 593 LLKTSKLGSLNS----KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           +L+   L         K    ++    +   LL L+N+++D   +DAG  +++     + 
Sbjct: 329 ILRRDLLDKEKPIDKGKIINNIDIERQNCFRLLRLINNLIDSTKLDAGHFEIDMINCNIV 388

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++ E+  S+A  +  NNI +   +D +      D  ++ +I   +LSN + F+    ++
Sbjct: 389 SVVEEITLSVAGYIINNNINLIFDTDVEEKIIACDPDKIERIMLNLLSNCIKFTDDDGSI 448

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
            +           SV++ G  IPE+  + +F+RF            G G+GLS+V+S + 
Sbjct: 449 FVNIFDGEEYITLSVEDTGIGIPEEKVEIIFDRFRQVDKSFTRNYEGSGIGLSLVKSLVE 508

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           +H G +S+ S     T    ++P K
Sbjct: 509 MHDGTISVESKYGVGTKFTIKLPVK 533


>gi|283853805|ref|ZP_06371028.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570809|gb|EFC18846.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1263

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 141/862 (16%), Positives = 283/862 (32%), Gaps = 113/862 (13%)

Query: 17   CTLFSCKIAVFGTIAGMLLTT--IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHS 74
              L    +       G+LL +   +  ++ IR R        E      E   + ++  +
Sbjct: 269  AVLTYADVTALKAAEGVLLRSNEELEALVAIRTR--------ELELARQESEARAAELEA 320

Query: 75   LLTENNCLTIVWDGKDETPE-IIGQLHQRIDIPQTDTDLLSFENWLK--------FHHYI 125
            ++ +       W  +D     +IG       +         F   +              
Sbjct: 321  VMRQTPAAI--WITRDTEARTVIGNPAGHRMLRMEPAP--PFSMAMPGDGPTCRASKEGR 376

Query: 126  KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAF-LR-----ILSLDGIYSELA 179
            +L+     + +  +   +  E  +       GR     A  LR     +    G++ ++ 
Sbjct: 377  ELTFEQRAMYRAARGESVTDEEIDLVYPDGSGRTIFGSAVPLRNAREEVTGAVGVFLDVT 436

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----KNTETEGIVFQ 234
            E       L    +  +    S+   V+  D  G  +  N ++      +N E     F 
Sbjct: 437  EQKRIEAALRQSQAKLEAALASMADAVFISDAEGRFIHVNDAFATFHKFRNKEECARTFA 496

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-----------SYKIVRVL 283
            +  G       +     +   +       ET +  E+   +           ++  +R  
Sbjct: 497  QYPGILDVFLPDGTLAPVDQWAVPRALRGETATNDEYTLRRKDTGETWVGSYAFAPIRDG 556

Query: 284  NSF--GEAGIAIDVSKEITVNDQLT------HTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            +    G   +  D+++      +L          + + +L      +D        +   
Sbjct: 557  DGAIVGSVVVGRDITERKKAEHELLLKEGELREAQRIAHL--GSWHWDAATDATTASPEL 614

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHL 394
              ++ +D A            +F +    L  +  W+     +     +   ++ D    
Sbjct: 615  YAIYGLDPA--------QPFPDFRQQRGTLYPEAGWERINAAVGQSIATGVGYELDVKAF 666

Query: 395  PNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETK----------------YNT 431
             +G+ + +          +    G     +++T +   E                  + +
Sbjct: 667  CHGEPIWITTRCEVVRDMAGKISGLRGTVQDITERKLQEQVLTFLATCGHHRDGLDFFQS 726

Query: 432  LVKVQGETI------------DHLSEGVAVFGPDGRIKL-SNPAFRSLWKTEENRLSPGT 478
            L +   E +            D L+        DG  +   + A       E    +   
Sbjct: 727  LARYLAEILRMDFVCIDRLEGDGLTARTLAVYFDGHFEDNLSYALADTPCGEVVGKTVCC 786

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            + RN+          +D        IT +D   +       +   ++ +  +        
Sbjct: 787  YPRNVRGLFPDDAVLADMAAESYVGITLWDAAGRPSGLIAVIGRHALKDSRLAESILQMV 846

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                 +  + + A  AL    E    A   K+ F+ ++S+E+R+PL  ++G   L+ T+ 
Sbjct: 847  GGRAGSELERLYAAEALLLAKETAENASRTKSEFLANMSHEIRTPLNGVLGMLQLMTTT- 905

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               L+++Q +YV     SS  L  L++DILDL+ ++AG + +      L  L   V +  
Sbjct: 906  --PLDTEQKEYVLAAIQSSKRLTRLLSDILDLSRIEAGRLVIQEGEFTLAPLRTSVLELF 963

Query: 659  ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
                 +  + +    D  L    V D  RL QI   ++ NA+ F+ KGS V + A     
Sbjct: 964  FVAAKDKGLSLDFTLDPALPPRLVGDEARLRQILFNLVGNALKFTEKGS-VTVAAVPLGA 1022

Query: 717  -----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                    +F+V + G  IP D  + +F  FV       RR  G GLGLSIV+  + L G
Sbjct: 1023 TDAVPARVLFTVTDTGIGIPPDRLRDIFEPFVQAEGTYTRRFQGAGLGLSIVKKLVGLMG 1082

Query: 770  GHVSISSSDEGVTTINCRIPSK 791
            G + I ++    TT    +P +
Sbjct: 1083 GSLEIDTAPGQGTTCYLSLPFR 1104



 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 64/502 (12%), Positives = 141/502 (28%), Gaps = 66/502 (13%)

Query: 125 IKLSKATEKLRK---EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAET 181
            +L  A ++LR+     ++        N+  + +   +  +        ++    EL   
Sbjct: 100 AELQAAHDRLREVMEHDEALHEELRASNEELLSMNEELQSAS-----EEMEASREELQAL 154

Query: 182 TLKCKKLSNHISVFKVLFDSL----DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
             +       +S      ++L    +      D+   ++ A  +             + +
Sbjct: 155 NEELSAKVEELSKANGFVENLLRCTNLATIFVDRGQRVMRATPAALDIFHLAVEDAGRPL 214

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI---- 293
              +   ++      I      +N  E   T   G     ++    +   EA  A+    
Sbjct: 215 DAIKARVEDPHLAGDIERVLGGQNVVEREVTGPEGRCYVKRVFPFRDGQAEAEGAVLTYA 274

Query: 294 DVSKEITVNDQLTHTYEILHNL-----------------------------TVAIAIF-D 323
           DV+        L  + E L  L                               AI I  D
Sbjct: 275 DVTALKAAEGVLLRSNEELEALVAIRTRELELARQESEARAAELEAVMRQTPAAIWITRD 334

Query: 324 QNRYLQFHNRSFVELWEIDLA--FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
                   N +   +  ++ A  F    P +       +   +L      +         
Sbjct: 335 TEARTVIGNPAGHRMLRMEPAPPFSMAMPGDGPTCRASKEGREL--TFEQRAMYRAARGE 392

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVKVQ 436
             + E     +   +G+T+               G + +F ++T Q  +E          
Sbjct: 393 SVTDEEIDLVYPDGSGRTIFGSAVPLRNAREEVTGAVGVFLDVTEQKRIEAALRQSQAKL 452

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              +  +++ V +   +GR    N AF +  K                     +  +   
Sbjct: 453 EAALASMADAVFISDAEGRFIHVNDAFATFHKFRNKE-ECARTFAQYPGILDVFLPDGTL 511

Query: 497 WDLFA-AIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNA-----QTMLTFVNVT 546
             +   A+  +   E  +         D+    V  Y+  P+ +       +++   ++T
Sbjct: 512 APVDQWAVPRALRGETATNDEYTLRRKDTGETWVGSYAFAPIRDGDGAIVGSVVVGRDIT 571

Query: 547 DSVRAERALTEKNEALRKADEI 568
           +  +AE  L  K   LR+A  I
Sbjct: 572 ERKKAEHELLLKEGELREAQRI 593


>gi|254467263|ref|ZP_05080674.1| virulence sensor protein BvgS [Rhodobacterales bacterium Y4I]
 gi|206688171|gb|EDZ48653.1| virulence sensor protein BvgS [Rhodobacterales bacterium Y4I]
          Length = 804

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/471 (22%), Positives = 195/471 (41%), Gaps = 30/471 (6%)

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
               R L +     + +  +D+    T      LL  LR+ ++   +L+ +  +      
Sbjct: 206 LGARRNLGYSRDEILGMTALDIKPDFTAEEFAALLAPLRAGDRQTLELSTRHQR------ 259

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
                  KD    P    LH++    P    + M E++T +   +       +   + ++
Sbjct: 260 -------KDGSCYPVSIKLHLLEADRPL--YVAMVEDITEKRADQEAARLANERLSDAVE 310

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            L++G  +F  D R+ L+N  +  ++      + PG   R I  + +            A
Sbjct: 311 ALADGFVLFDKDERLVLANSTYSEMFPEGAEIVRPGVSYREIVTSLANSKVYGRPDIDTA 370

Query: 502 AIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           A I S  +  ++   +  L +    VL+       +   +   V+VT+   A       N
Sbjct: 371 AFIESRMEVFRAGDASQLLRISDGRVLKAYDRRTADGGYVCLRVDVTELEEARAKAEAAN 430

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            A          F+ ++S+E+R+P+  I+G  DL+  +    L  +Q   ++ ++ASS  
Sbjct: 431 AAKSA-------FLANMSHEIRTPMNGILGMLDLIADT---PLTPEQQDMLQTVTASSET 480

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLG 678
           LL ++ND+LDLA ++AG  +L+ +      +  +V            I  +V    G   
Sbjct: 481 LLAILNDVLDLARIEAGREELDNAPFSPARVCRKVADLHQAVASHKGIAFEVDLGPGTED 540

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             + D +R+ QI   +  NA+ F+  G  V L A    G  + SV + G+ + ED    V
Sbjct: 541 PRLGDARRIEQILHNLCGNALKFTEAG-KVRLSAWTGPGGLMLSVSDTGTGLTEDDQVRV 599

Query: 739 FNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F++F           G GLGL+IV+  +   GG +S++S+    T I  ++
Sbjct: 600 FSKFEQAGPAASALGGTGLGLTIVKELVERMGGSLSVASAPSEGTEIQLQL 650



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 84/242 (34%), Gaps = 13/242 (5%)

Query: 218 ANISYKKNTE--TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
            N+  ++N     + I+   A+        EE    +    A ++   E  +  +  +  
Sbjct: 204 VNLGARRNLGYSRDEILGMTALDIKPDFTAEEFAALLAPLRAGDRQTLELSTRHQRKDGS 263

Query: 276 SYKIVRVLN-----SFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNR 326
            Y +   L+           +  D++++    +      E L      L     +FD++ 
Sbjct: 264 CYPVSIKLHLLEADRPLYVAMVEDITEKRADQEAARLANERLSDAVEALADGFVLFDKDE 323

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ-LNWKTWKENIFSVYKSS 385
            L   N ++ E++      +    S  E++  L ++       ++   + E+   V+++ 
Sbjct: 324 RLVLANSTYSEMFPEGAEIVRPGVSYREIVTSLANSKVYGRPDIDTAAFIESRMEVFRAG 383

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           +       + +G+ L         GG + +  ++T   +   K       +   + ++S 
Sbjct: 384 DA-SQLLRISDGRVLKAYDRRTADGGYVCLRVDVTELEEARAKAEAANAAKSAFLANMSH 442

Query: 446 GV 447
            +
Sbjct: 443 EI 444


>gi|91793273|ref|YP_562924.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91715275|gb|ABE55201.1| PAS/PAC sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 935

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/725 (17%), Positives = 249/725 (34%), Gaps = 84/725 (11%)

Query: 131 TEKLRKEGQSFD--LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
              +RK G  F   +   +  D    + G +              I ++ +       KL
Sbjct: 60  LTLIRKNGSRFSAMVSVTSLRDATAAVIGYLL-------------IGTDNSARKEADDKL 106

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF--KE 246
                  + L ++    +   + +G I   N +   + +  G+  +  IG     +    
Sbjct: 107 WQASQYARSLLEASLDPLVTINLSGKITDVNEA---SIKATGLDREALIGTDFSHYFTDP 163

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV--------RVLNSFGEAGIAIDVSKE 298
               +    +    +  +   T+ H N +   ++              G    A D++  
Sbjct: 164 HEANKGYREAFSNGSVTDYPLTIRHRNGRLIDVLYNASVYRDHKGQVLGLFAAARDITAR 223

Query: 299 ITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE---IDLAFLATNPS 351
              ++ L         I ++   +    D    +Q  N     +     ID+    T   
Sbjct: 224 KRADEALLKAGALQNAIFNSANFSSIATDAKGVIQIFNVGAERMLGYAAIDVINKLTPAD 283

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL----PNGQTLHVIVT-- 405
             E  E +  A  L  +L+          V+K+    +D + L     +G     IV+  
Sbjct: 284 ISEPQEIVIRARALSHELDTPITPGFDALVFKARRGIEDIYELTYIRKDGSRFPAIVSVT 343

Query: 406 -----SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                 N   G + +  + T +   E        +Q    +  +         G I++ N
Sbjct: 344 ALRDAHNNIIGYLLIGTDNTARKRAEEALLKAGALQRAIFNSANFSSIATDAKGVIQIFN 403

Query: 461 PAFRSLWKTEENRLSPGTHIRNI---------AATCSRYYNESDGWDLFAAIITSFDDER 511
                +       +       +I         AA  S+    S      A +  +     
Sbjct: 404 VGAERMLGYTAAEVMDKITPADISDPKEMVLRAAQLSKELETSIAPGFEALVFKASRGIE 463

Query: 512 KSLQGTLELLSDSVLE--YSIIPLPNA-----QTMLTFVNVTDSVRAERA---------- 554
              Q T      S      S+  L +A       +L   + T  ++ E            
Sbjct: 464 DIYQLTYIRKDGSRFPAVVSVTALRDAYNVIIGFLLIGTDNTARIQVEEEREQLTATLQD 523

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L        KA+  K+ F+  +S+ELR+PL  I+GF  LL+  +  +L   Q   +
Sbjct: 524 KNAELESSKAIAEKANRAKSEFLSSMSHELRTPLNAILGFAQLLEKGQ-PTLTHTQEVRI 582

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  +   LL+L+N+ILDLA +++G + L+  +++L D++NE K  +  +  +  IR+ 
Sbjct: 583 QQIIKAGWYLLSLINEILDLAVIESGRLSLSRESVLLIDVINESKAMVEPQALKREIRLN 642

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NGDFIFSVK 724
            +         AD  RL Q+   +L+NA+ ++ +  T+ ++                ++K
Sbjct: 643 FLPFSHALHANADHTRLKQVLINLLTNAIKYNRQHGTITVECTEVKAIDKLQDRIRITIK 702

Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +NG  + E     +F  F       G + G G+GL + +  + L GG + + S     + 
Sbjct: 703 DNGYGLSEANISQLFQPFNRLGQESGSQEGTGIGLVVTKQLVELMGGTIGVKSQVGVGSE 762

Query: 784 INCRI 788
               +
Sbjct: 763 FWIEL 767


>gi|329849064|ref|ZP_08264092.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328844127|gb|EGF93696.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 703

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 176/441 (39%), Gaps = 60/441 (13%)

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ-----GETIDHLSEGVAVF 450
           +G+ + V+              ++T +   E +   ++++      G+T   L    A+ 
Sbjct: 132 DGRCIRVVGN----------IIDITARKQAERRQAVMLELTDLLRIGDTDQALHAACALM 181

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN--IAATCSRYYNESDGWDLFAAI----- 503
              GR    +     L    E+  S      +  +      Y     G  + AA+     
Sbjct: 182 ---GRYFGVSRVGYGLLDPVEDIFSYTVCWTDGFVPPLLGDYPAHVFGEKIVAALSAGQT 238

Query: 504 -------ITSFDDERKSLQGTLELLSDSVL--------EYSIIPLPNAQTMLTF------ 542
                    S  DE ++L+   ++ + ++L            I   NAQ    +      
Sbjct: 239 IVVDDLFAASISDEARTLETAADVDTRAILVVPFLRGGRLRTIVYLNAQQPRHWDPAEIA 298

Query: 543 ---------VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                      + D     R LT+      +A   K  F+ ++S+E+R+P+  IIG   L
Sbjct: 299 FMEAVAERTRQLIDRAENIRELTQARRKAEEASLAKTEFLANMSHEIRTPMNAIIGIGTL 358

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  S+   L ++Q ++V+ ++ S+  LL L+ND+LD+A ++A  ++L      L  +L E
Sbjct: 359 LAMSQ--PLTARQQEFVKTLNVSAKGLLELINDLLDVAKIEAHTVELEEVPFSLEQILLE 416

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V   +  +  E  +      D   G +F  D  RL QI   + SNA+ F+  G   I  A
Sbjct: 417 VASMMTVRSREKGLTFTTAIDSIRGRTFAGDPMRLRQIVLNLCSNAVKFTQTGGVEIRVA 476

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
                    SV++ G  I  +   ++F++FV   +    +  G GLGL+I  +   L GG
Sbjct: 477 CGAEDSVAISVRDTGIGIAPENLSTIFDKFVQADNSISRKYGGTGLGLAITRNLAELMGG 536

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            ++I S     +T    +P +
Sbjct: 537 AIAIDSQPGHGSTFTVTLPLR 557


>gi|239993130|ref|ZP_04713654.1| PAS sensor signal transduction histidine kinase [Alteromonas
           macleodii ATCC 27126]
          Length = 943

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/503 (20%), Positives = 203/503 (40%), Gaps = 27/503 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            + N Q       L N    + IFD   +  + N + +++W +           +   E 
Sbjct: 307 ESFNKQRRLYETALSNTPDLLYIFDLEGHFTYANDALLQMWGLSWDEAIGKTCLELGYEP 366

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
             +   + E       K+ I S    + TH     + +   + VI              +
Sbjct: 367 WHADMHMQEIRQVIETKQPIRSDVPFTGTH--GRRIYDYIFVPVIGEDGNVEAIAGSTRD 424

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +T +   E         +   ++     G+  +     +  ++     L+    +    G
Sbjct: 425 VTERKHAEEMAKRAESRRRLALEASHSFGIWDWDIKQNLFTADERLGELFNLSSDEAENG 484

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITS------FDDERKSLQ--GTLELLSDSVLEYS 529
             I        +Y +  D     AAI  S      FD+E + LQ  GT+   S       
Sbjct: 485 VAIE----VPKQYIHPDDLAACEAAICESINNRTLFDEEYRILQKDGTVRWAS---FRGR 537

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +I   + +         D+ R   A+    +AL++AD  K+ F+  +++ELR+PL  I  
Sbjct: 538 VIYNSSGEPERFPGVGVDTTRERNAI----DALQEADRRKDEFLATLAHELRNPLAPIRN 593

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             ++L++       +++S+    +    T ++ LV+D++D++ +  G ++++   + L +
Sbjct: 594 ALEILQSDDYSQ--NQKSEAFGRVERQVTQMIRLVDDLMDVSRITRGKIRIHRKPVNLCE 651

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +L+   ++I   + E    + V    +      D  RL QIFS I++NA  ++  G  + 
Sbjct: 652 ILDTAIETIQPLIDEKQHTLLVEKVAEPVWVNGDLIRLSQIFSNIINNAAKYTPPGGNIE 711

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           +  +  +G    +VK+NG  IP    KSVF+ F          + G+G+GL++V+    L
Sbjct: 712 VCISTCDGKVTIAVKDNGEGIPAGKLKSVFDMFTQVDGALERSQGGLGIGLTLVKKLTEL 771

Query: 768 HGGHVSISSSD-EGVTTINCRIP 789
           H G V++ S   +  TT    +P
Sbjct: 772 HDGTVNVQSDGVDKGTTFIVTLP 794



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 52/162 (32%), Gaps = 14/162 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +  ++    +N   ++    + +  + + +F  +G    +N A   +W    +       
Sbjct: 300 SALLENIESFNKQRRLYETALSNTPDLLYIFDLEGHFTYANDALLQMWGLSWD------- 352

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNA 536
              I  TC     E    D+    I    + ++ ++  +         + +Y  +P+   
Sbjct: 353 -EAIGKTCLELGYEPWHADMHMQEIRQVIETKQPIRSDVPFTGTHGRRIYDYIFVPVIGE 411

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              +  +  +     ER      E + K  E +       S+
Sbjct: 412 DGNVEAIAGSTRDVTERK---HAEEMAKRAESRRRLALEASH 450


>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
 gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
          Length = 1547

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 137/776 (17%), Positives = 271/776 (34%), Gaps = 114/776 (14%)

Query: 38   IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIG 97
            I  I+  + QR +  + ++E+   L          H     +  L   +    E      
Sbjct: 402  IWSIVEDLSQRQAAQQALDESRENL----------HRFFELSGSLMCTFTHLGEFKVFNN 451

Query: 98   QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK--EGQSFDLVAETQNDCAIKI 155
                 +   + +     F +++    Y ++    E L K     SF      ++   + +
Sbjct: 452  AFLWLLGYNKEEVQSSPFLSFVHPEDYREVVAELEHLLKVKTSTSFVCRVRCKDGSYVHL 511

Query: 156  EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGD 214
               VS   A     ++     ++        +L+    + + +        W  +     
Sbjct: 512  NWNVSVDPA---SSNVYATAVDVTSHREHESRLAQQQEMLQSMSKLARIGAWEINLAEAA 568

Query: 215  ILWANISYKKNTETEGIVFQKAIGESRKLFK-----EEIKKRMISSSALEKNFCETVSTL 269
            + W+ ++  K        F+  +  + + +K       I++ +   +   + F E V   
Sbjct: 569  VYWSGMT--KVIHEVDEDFEPFLDSALQFYKPGKSLSTIEQAIQLCTESGQAFSEEVQIT 626

Query: 270  EHGNNKSYKIVRVLNSFGEA------GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD 323
                +  + +V     F +       G   D++    +   +  T + L      +    
Sbjct: 627  TAKEHDLWVLVTGKAEFHDGRCVRIYGSYQDINARKLIEQNIERTQQELQQQMSML---- 682

Query: 324  QNRYLQFHNRS-FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
                L   +++ F+E  +ID AF       D +L+  R+      ++++ T K       
Sbjct: 683  ---QLIAESQASFIEQNDIDSAF---QEFLDNILKLTRTDFGFIAEIDYDTGK------- 729

Query: 383  KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV--DLETKYNTLV-KVQGET 439
                 +   W+                G       +L+     D E      + ++Q   
Sbjct: 730  ---RPYLHRWYFA--------------GAQTACDNDLSSCKLNDYEQHLRQALFRLQPVV 772

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            ++++ +                                 HI N       +         
Sbjct: 773  LENIDQ---------------------TWHMCTSPQTAVHINNFLGVPITHSGNGIALVG 811

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQTMLTFVNVTDSVRAERALTE 557
             A  I  F              +D ++E+ + PL N   Q +     +    +AE+AL  
Sbjct: 812  LANRIGGF--------------NDDIIEW-LKPLMNTVGQFVHGARGIHARQKAEKALVA 856

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              EA  +A   K+ F+  +S+E+R+PL  ++G   LL  ++   L+ +Q + +   S SS
Sbjct: 857  AKEAAEQAAHAKSDFLAMMSHEIRTPLNGVMGMLSLLNRTQ---LSDEQRRKLTIASHSS 913

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGK 676
              LLN++NDILD + VDAG ++L      L   L E  +S+A +  E ++ + +  +D  
Sbjct: 914  NTLLNIINDILDFSKVDAGKIELESIEFNLIAQLEEFSESMAMRAQEKHVELILDTTDIN 973

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVK--NNGSSIPED 733
                  D  R+ Q+ + ++ NA+ F+++G   V         D IF V   + G  I  D
Sbjct: 974  TPMVCGDPGRIRQVLANLVGNAIKFTAEGEVLVRCALVPQKDDLIFQVSVVDTGIGIEND 1033

Query: 734  MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                +FN F        R   G GLGL+I +    L GG ++  S     +T +  
Sbjct: 1034 KLDELFNPFTQVDASTTREYGGTGLGLAICKKLCVLMGGDIAAHSELGSGSTFDFH 1089


>gi|291565788|dbj|BAI88060.1| cyanobacterial phytochrome [Arthrospira platensis NIES-39]
          Length = 846

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 11/287 (3%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RKS +   E +S   L ++ + +  A  +   + +     +  AL E  +    A+  K+
Sbjct: 306 RKSFEAWKETVSGHALGWNELEINAAMELRNTLMLAVLHFSHFALEEVAKRAEMANRSKS 365

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  I+GF DLLK       + KQ  Y++ I+A    L+ L++DILDL
Sbjct: 366 EFLANMSHEIRTPMNAILGFCDLLKGLV---EDEKQQSYLDAIAAGGRALIGLIDDILDL 422

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG ++L Y  + L  LL E++Q          + +++  +  +   +  D  RL Q
Sbjct: 423 SKIEAGKLQLEYQPMNLPILLQEIQQIFLPTAMAKGLSLQINIEPNVPKIIEFDEVRLRQ 482

Query: 690 IFSKILSNAMDFSSKGS-TVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVS 744
           I   I+ NA+ F+ +GS T+ ++A   + D        + + G  I  D  + +F  FV 
Sbjct: 483 ILFNIVGNAIKFTEEGSVTISVRAQNCDHDSRVTLEIMIADTGMGISPDQHQQIFEAFVQ 542

Query: 745 NA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +      +  G GLGL+I     NL GG +++ S     +      P
Sbjct: 543 SEGQSNRRYGGTGLGLAITRRLTNLLGGKLTLESQLGLGSVFTFAFP 589


>gi|170720398|ref|YP_001748086.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169758401|gb|ACA71717.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 919

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 22/329 (6%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV------LE 527
           +     I +  A      N+     L   +      E   L   +  +++++      L+
Sbjct: 189 MRMSRTINDPIARIKHAVNQLKDGHLEERLPAMGSHELDELARGINRMAETLHSAHEELQ 248

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +SI    +  T     N+         L    +   +A  IK+ F+ ++S+E+R+PL  I
Sbjct: 249 HSI----DQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGI 304

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GFT LL+ S+   L  +Q  Y+  I  S+  LL ++N+ILD + ++AG + L+     L
Sbjct: 305 LGFTHLLQKSE---LTPRQLDYLSTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNL 361

Query: 648 NDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            DL+ +    +A   H   +  + +I      S V D  RL QI + ++SNA+ F+ +G 
Sbjct: 362 RDLVQDTLTILAPAAHAKQLELLSLIYRDTPSSLVGDPLRLKQILTNLVSNAIKFTREG- 420

Query: 707 TVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           T++++A      +DN     SV++ G  +     +++F  F    +    Q  G GLGL 
Sbjct: 421 TIVVRAMLEDEQQDNAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLV 480

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +  I   GG + + S+    +     +
Sbjct: 481 ISKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|293372644|ref|ZP_06619026.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292632453|gb|EFF51049.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 862

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 210/505 (41%), Gaps = 25/505 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---LAFLATNPSNDE 354
           +  + +Q      + H++   +  +D + ++ F NRS +++  +                
Sbjct: 366 QNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNRSLLQMLHLPYESGGRFYEGMMAGS 425

Query: 355 LLEFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +   +     + + +Q+  K     I       E H D +   +G+ + +        
Sbjct: 426 IFKIYYNGQDILHSMLKQVAAKGESVKIPQGAFMKEVHSDKYFPVSGEIVPIRSKDT-IT 484

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLS--NPAFRSLW 467
           G      N++ +   +  ++  V            E      P G +K    + +  ++ 
Sbjct: 485 GMALSARNISNEEMQKRFFDMAVDESSIYPWQFDMETNCFIFPQGFLKRLGYDESVTTIS 544

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + E +R      ++ I+   +R     D          + + E +  +    +++    +
Sbjct: 545 RDEMDRTIYPDDLKEISPLFNRALTGEDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQD 604

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      +    ++     AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I
Sbjct: 605 ------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAI 658

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF+DLL  +  G  + + +Q++  I+ +  +LL L+NDILDL+ +++G M+  ++   L
Sbjct: 659 VGFSDLLSDTS-GFTSEEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNL 717

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL  V  S    M    + + + + +        D  RL Q+ + +++NA  F+S G 
Sbjct: 718 PLLLKTVHDSQRLNMPP-GVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG- 775

Query: 707 TVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            +      D   G     V++ G  I E+  + +F RF    +  Q  G GLGLSI ++ 
Sbjct: 776 FITFGYEDDEVPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTI 833

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I    G +S++S     T    R+P
Sbjct: 834 IERLNGTISVTSEVGKGTRFTVRLP 858


>gi|262275446|ref|ZP_06053256.1| putative sensory box sensor histidine kinase/response regulator
           [Grimontia hollisae CIP 101886]
 gi|262220691|gb|EEY72006.1| putative sensory box sensor histidine kinase/response regulator
           [Grimontia hollisae CIP 101886]
          Length = 877

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 172/389 (44%), Gaps = 24/389 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            ++ L+++ +   +     K+  E ++   E   +    G + LSN A  +L+   +N  
Sbjct: 224 TYQELSLEKNRYKQLAVQNKMLAEIVEQSHEAYLITDLSGYVSLSNKALDNLFGFRDNEA 283

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +    +         D           +  +++     +    ++  I   P
Sbjct: 284 CDKDFQTLLFGENTAEEAAYQLRDAMQL------GQSITVRAECLSIDGRAVQTEITAFP 337

Query: 535 -------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                  N + +L   +V + +  E+AL    +   +A   K+ F+ ++S+E+R+P+  I
Sbjct: 338 IVNNAGVNDRYVLIVRDVHEQLEFEKALKHAADTAHQATRAKSQFLANMSHEIRTPMNGI 397

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG +++L+ S   SL  +Q  +V+ I +S+  LL L+NDILD + ++   +KL+  T  L
Sbjct: 398 IGVSEMLRES---SLPKEQKGFVDIIYSSAKSLLQLINDILDFSKLEEKKLKLSEETFCL 454

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++ E    +A       + + V     + +  ++D  RL Q+F+ +L NA+ F+  G 
Sbjct: 455 RTMVEETASMVAISASRKELLVVVDIPPDINTLVISDELRLRQVFNNLLGNAVKFTEHGY 514

Query: 707 T-VILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLS 759
             + ++A    GD    +  ++++ G  IPED    +   F    ++   + +G GLGLS
Sbjct: 515 IRISVRAEPKPGDTSSTYTLTIEDTGIGIPEDKLSDITKAFEQVNSSTSRRYKGTGLGLS 574

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +S ++L    + + S     +  +  +
Sbjct: 575 ITKSLLSLFNSELEVVSEYNKGSRFSFTL 603


>gi|322421487|ref|YP_004200710.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
            M18]
 gi|320127874|gb|ADW15434.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
            M18]
          Length = 1661

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/644 (18%), Positives = 235/644 (36%), Gaps = 31/644 (4%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            +  +     ++ +     ++L    +  + L +S    +   D  G I   N   ++   
Sbjct: 1022 VRGIFASARDVTDHVRLNEQLREQQTYLRGLIESSVDGLITVDPEGFITDVN---EQMCR 1078

Query: 228  TEGIVFQKAIGES-RKLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNKS-YKIVR 281
              G + ++ IG   R  F +  +     ++  +  +  N+   + T         +    
Sbjct: 1079 MTGYLREELIGSQFRDYFTDPARAVTGVKLTLAEGVVTNYDLVLKTKTGRKATVSFNASV 1138

Query: 282  VLNSFGEA----GIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNR 333
               + G        A DVS++  +  QL+    +   ++     A+     +  +   N 
Sbjct: 1139 FRAADGRVQGIFASARDVSEQARLQAQLSDQQAYNRSLIEASADALFAIAPDGTITDVNE 1198

Query: 334  SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
                L       L  +  +    +      +L      +T        Y+     +    
Sbjct: 1199 EATRLTCYSRKHLINSGFSSYFTD-----PELASAGVRQTLSRGRVLTYELVLITRHNRR 1253

Query: 394  LPNGQTLHVIVTSNP-RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
            +P      V   +   + G +    ++T Q  LE +           I+   + +    P
Sbjct: 1254 IPVSFNAGVFSDAAGKQIGILAGARDITEQKKLEQQLRDQQFYARSLIESNIDALMTTDP 1313

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
             G I   N    +L       L      R           E     L    +T+++    
Sbjct: 1314 VGIITDVNQQMEALTGHSREDLIGTPFKRYFID--QERAEEGIRRVLREGKVTNYELTAL 1371

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            S QG   ++S +   ++              +VT+    E+ L EK   +  A+  K+ F
Sbjct: 1372 SKQGRETVVSYNAATFADREGKLQGVFAAARDVTERKSFEKTLEEKGHEMENANLAKDRF 1431

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            +  +S+ELR+PL  IIGFT  L     G L   Q + +  IS S+  LL L+ND+LDLA 
Sbjct: 1432 LASMSHELRTPLNAIIGFTGTLLMRLPGPLTGDQEKQLSNISTSAKHLLLLINDLLDLAK 1491

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            +++G +++N   +    L+ E+  ++        +++ + ++G   +   DR+ L QI  
Sbjct: 1492 IESGKVEINPEPVSCRALVQEIAGTLTPMAENKGLKLSLAAEGD-RTINTDRRALSQILI 1550

Query: 693  KILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             +  NA+ F+ +G     V   A     +   SV + G  I ++    +F  F       
Sbjct: 1551 NLAYNAIKFTQQGEVRIAVSFDAGEGGDEVEISVTDTGLGIKQEEQAKLFRAFTQVDSSS 1610

Query: 750  QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             RR  G GLGL + +  + L  GH+ + S     +     +P++
Sbjct: 1611 SRRFEGTGLGLYLSQKLVELLDGHIVMESEYGKGSRFAVVLPAR 1654



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/491 (14%), Positives = 161/491 (32%), Gaps = 56/491 (11%)

Query: 53  KKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDL 112
           K+ ++   FL+ I    ++Y  +  + +   ++W+       I G   + + + + ++ +
Sbjct: 24  KQTHDVKEFLANIFQSSTEYSIIGKDLDGTILLWNEGARR--IYGYQPEEV-VGKANSSI 80

Query: 113 LSFENWLKF-HHYIKLSKATE---------KLRKEGQSFDLVAETQNDCAIKIEGRVSGS 162
           L  E  LK       L  A           + RK G+ F               G+  G 
Sbjct: 81  LHTEEDLKSGKPAQMLEAALREGKWEGTINRRRKSGEVFTARVVVTPRR--DDNGKAIGF 138

Query: 163 CAFLRILSLDGIYSELAETTLKCKKL-----SNHISVFKVLFDSL-DFLVWHRDQAGDIL 216
               + ++ +  +S+                   +     + +S  ++ V  +D  G IL
Sbjct: 139 LLISKDVTDEVRFSDQIRKAKLFDSAIVSNAQEAVDFITNILESSTEYSVIGKDLDGKIL 198

Query: 217 WANISYKKN-----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
             N   ++       E  G      +     +     ++ + S+    K         ++
Sbjct: 199 LWNEGARRLYGYEPEEVVGKANSSILHTDEDVTAGRPREILASALHNGKWEGTINRRRKN 258

Query: 272 GNNKSYKIVRVLN------SFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAI 321
           G+  + ++V          + G   I+ D++ EI + ++L     +T  ++ +   A+  
Sbjct: 259 GDLFTARVVITPRRDSLGRAIGYLLISKDITDEIRLTEKLKSTQFYTRSLIESNIDALMT 318

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
            D    +   N+  V L       L  +P  +   +  R+     E+      +E   + 
Sbjct: 319 TDPLGIISDVNKQMVTLTGYTRDELIGSPFKNYFTDSERA-----EEGIKLVLREGKVTN 373

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGE 438
           Y+ +   K     P   + +     +  G   G      ++T Q +LE +          
Sbjct: 374 YELTALSKAG--QPTVVSYNASTFRDAEGRLQGVFAAARDITEQKELEKRLRDSEAYNRG 431

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I+   +G+      G I   N     +       L     I         Y+ +SD  D
Sbjct: 432 LIEASVDGLITVDRSGAISDVNARMCQMSGYTREDLIGTPFID--------YFMDSDRAD 483

Query: 499 LFAAIITSFDD 509
           L   +  +F++
Sbjct: 484 L--GVKRTFEE 492



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 106/358 (29%), Gaps = 32/358 (8%)

Query: 131 TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190
              L K GQ    V           EGR+ G  A  R         ++ E     K+L +
Sbjct: 376 LTALSKAGQP--TVVSYNASTFRDAEGRLQGVFAAAR---------DITEQKELEKRLRD 424

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIK 249
             +  + L ++    +   D++G I   N    +  +  G   +  IG      F +  +
Sbjct: 425 SEAYNRGLIEASVDGLITVDRSGAISDVNA---RMCQMSGYTREDLIGTPFIDYFMDSDR 481

Query: 250 KRMISSSALEKNF---CETVSTLEHGNNKS--YKIVRVLNSFGEA----GIAIDVSKEIT 300
             +      E+              G      +     L+S G        A D++++  
Sbjct: 482 ADLGVKRTFEEGVVTDYALTMATRDGEKLVVSFNASVFLDSSGAVRGIFASARDITEQAG 541

Query: 301 VNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           + +QL+        ++      +   D    +   N +   +       L   P  D   
Sbjct: 542 LQNQLSEERAYNRGLIEASLDGLITVDPMLIITDVNETMCRMSGYSREELIGTPFPDYFT 601

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +  R+A  +   L+        + +  S +   +     N         +    G     
Sbjct: 602 DPRRAAEGVRLTLDRGA--ATNYELTLSGKEGNEQLVSFNAAIFKDETGA--VRGIFASA 657

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            ++T Q  L+T+ +         I+   +G+        I   N     +     N+L
Sbjct: 658 RDITEQARLQTQLSEERAYNRGLIEASVDGLVTVDEAMIITDVNETMCRMAGRRRNQL 715



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 113/358 (31%), Gaps = 28/358 (7%)

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVS----GSCAFLRILSLDGIYSELAETTLKCKKLSN 190
           R    +++L    +      +    +     + A   I +     +E A       +LS 
Sbjct: 616 RGAATNYELTLSGKEGNEQLVSFNAAIFKDETGAVRGIFASARDITEQARLQ---TQLSE 672

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF--KEEI 248
             +  + L ++    +   D+A  I   N   +      G    + IG S   +  + + 
Sbjct: 673 ERAYNRGLIEASVDGLVTVDEAMIITDVN---ETMCRMAGRRRNQLIGSSFPTYFSERQR 729

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIV--------RVLNSFGEAGIAIDVSKEIT 300
            +  +  +  E      V TLE  + +   +         R+    G    A D++++  
Sbjct: 730 AEEGVRLTFKEGAVTNYVLTLELSDGRLAPVSFNAAVFKDRLGKVRGIFASARDITEQKK 789

Query: 301 VNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +  QL     +T  ++ +   A+   D    +   N     L       L   P  +   
Sbjct: 790 LESQLNASQLYTRSLIESNIDALMTTDPVGVVTDVNEQMEWLTGYTRDELIGVPFKNFFT 849

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +  R+ + +  +L  +  K   + +   S+  K+T    N  T           G     
Sbjct: 850 DPGRAEDGI--RLVLREGKVTNYELTALSKQGKETVVSYNATTF--ADREGKLQGVFAAA 905

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            ++T Q  LE +           I+   +G+    PDG I   N     +       L
Sbjct: 906 RDITEQKKLELQLRDSQAYNRGLIEASIDGLITVDPDGIISDVNDRMCQMSGYARGEL 963



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/427 (12%), Positives = 128/427 (29%), Gaps = 23/427 (5%)

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            ++  +     ++ E      +L+      + L +S    +   D  G +   N   +  T
Sbjct: 773  KVRGIFASARDITEQKKLESQLNASQLYTRSLIESNIDALMTTDPVGVVTDVNEQMEWLT 832

Query: 227  ETEGIVFQKAIGESR--KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS-YKIVRVL 283
                        ++      + E   R++       N+  T  + +       Y      
Sbjct: 833  GYTRDELIGVPFKNFFTDPGRAEDGIRLVLREGKVTNYELTALSKQGKETVVSYNATTFA 892

Query: 284  NSFG----EAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            +  G        A D++++  +  QL     +   ++      +   D +  +   N   
Sbjct: 893  DREGKLQGVFAAARDITEQKKLELQLRDSQAYNRGLIEASIDGLITVDPDGIISDVNDRM 952

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             ++       L   P  D   +   +   + E    +   E   ++   +          
Sbjct: 953  CQMSGYARGELIGTPFTDYFTDPALAMAGVEETFAKEVVTEYALTLVSRTRRLLQV---- 1008

Query: 396  NGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
               + +  V  +P G   G      ++T  V L  +           I+   +G+    P
Sbjct: 1009 ---SFNASVFRDPTGSVRGIFASARDVTDHVRLNEQLREQQTYLRGLIESSVDGLITVDP 1065

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            +G I   N     +       L  G+  R+     +R         L   ++T++D   K
Sbjct: 1066 EGFITDVNEQMCRMTGYLREEL-IGSQFRDYFTDPARAVTGVKLT-LAEGVVTNYDLVLK 1123

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +  G    +S +   +            +  +V++  R +  L+++    R   E     
Sbjct: 1124 TKTGRKATVSFNASVFRAADGRVQGIFASARDVSEQARLQAQLSDQQAYNRSLIEASADA 1183

Query: 573  VQHVSYE 579
            +  ++ +
Sbjct: 1184 LFAIAPD 1190



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 98/315 (31%), Gaps = 40/315 (12%)

Query: 141  FDLVAETQNDCAIKI----------EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190
            +DLV +T+      +          +GRV G  A  R +      SE A       +LS+
Sbjct: 1118 YDLVLKTKTGRKATVSFNASVFRAADGRVQGIFASARDV------SEQARLQ---AQLSD 1168

Query: 191  HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
              +  + L ++    ++     G I   N    + T         +   S     E    
Sbjct: 1169 QQAYNRSLIEASADALFAIAPDGTITDVNEEATRLTCYSRKHLINSGFSSYFTDPELASA 1228

Query: 251  RMISSSALEKNFCETVSTLEHGNNKS---YKIVRVLNSFGEA----GIAIDVSKEITVND 303
             +  + +  +     +  +   N +    +      ++ G+       A D++++  +  
Sbjct: 1229 GVRQTLSRGRVLTYELVLITRHNRRIPVSFNAGVFSDAAGKQIGILAGARDITEQKKLEQ 1288

Query: 304  QLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            QL     +   ++ +   A+   D    +   N+    L       L   P     ++  
Sbjct: 1289 QLRDQQFYARSLIESNIDALMTTDPVGIITDVNQQMEALTGHSREDLIGTPFKRYFIDQE 1348

Query: 360  RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMF 416
            R+     E+   +  +E   + Y+ +   K         + +    ++  G   G     
Sbjct: 1349 RA-----EEGIRRVLREGKVTNYELTALSKQGRETV--VSYNAATFADREGKLQGVFAAA 1401

Query: 417  ENLTVQVDLETKYNT 431
             ++T +   E     
Sbjct: 1402 RDVTERKSFEKTLEE 1416


>gi|239627024|ref|ZP_04670055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517170|gb|EEQ57036.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 843

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/490 (19%), Positives = 202/490 (41%), Gaps = 46/490 (9%)

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           L + NR+  E  ++    +      + +       +  P   N K  ++  +     +  
Sbjct: 90  LLYINRTSSETLQLQPGKVIGRKCYEVVQNR---TSPCPFCNNSKLRRDGFYEWEYYNPY 146

Query: 388 HKDTWHL------PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
            K T+ L       +G+   + ++           +NL+ +  LE     + + +   + 
Sbjct: 147 LKHTYMLKDRLIDWDGRDCRLEIS----------IDNLSPEYKLEK----MDREREAILR 192

Query: 442 HLSEGVAVFG-PDGR-IKLSNPAFRSLWKTEENRLSP-------GTHIRNIAATCSRYYN 492
            +  G A     DGR +      F  L    + +            H  +++   +  Y+
Sbjct: 193 TIPGGFARVDARDGRTVTWYGGDFLHLIGYTKEQFENELHSQCSYIHPDDLSRASTIMYH 252

Query: 493 ESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
             +     AA   I + D  +K L  T   +S     +  I    +  +    +     R
Sbjct: 253 SKETGKPTAAEGRIITRDGTQKVLTMTFSYMSAEN-SWDGIESFYSIGIDITKDRELQER 311

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
              AL E  +  R A+  K +F+  +S+++R+P+  I+G T + + +       K    +
Sbjct: 312 QRNALEEAYQVARVANAAKTNFLSSMSHDIRTPMNAIMGMTTIAQANLESP--EKIRDCL 369

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  SS  LL+L+N++LD++ +++G + L  + + L D++ EV       ++E +   +
Sbjct: 370 EKIKTSSRHLLSLINEVLDMSKIESGKVSLALAQMNLPDMIQEVMDMCRPLVNEKHQLFR 429

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSV 723
           + I   +  + +AD  RL Q+   +LSNA+ ++ +G T+ L+         D   + F  
Sbjct: 430 ISIGRVRHENVIADGDRLRQVLMNLLSNAIKYTQEGGTITLRINERSSLTPDKRQYEFIC 489

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +NG  I +D    +F+ F         + +G GLG++I E+ + +  G + + S +   
Sbjct: 490 TDNGIGISKDYLPHIFDAFTRAEDSRVSKIQGTGLGMAITENIVRMMNGIIDVKSEEGAG 549

Query: 782 TTINCRIPSK 791
           +T+   +P +
Sbjct: 550 STVTVSVPLE 559


>gi|237747982|ref|ZP_04578462.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379344|gb|EEO29435.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 762

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           S+L +++I       ++         +  + L +  E+ + A+  K+ F+ ++S+++R+P
Sbjct: 198 SILIFAVISALIIYLLILKRKEEYEAQMRQILRQALESAQTANAAKSQFLFNMSHDIRTP 257

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +  IIG T L     L  LN  Q    Y+  IS+SS  LL L+ND+LD++ ++ G + LN
Sbjct: 258 MNAIIGMTTL----ALIHLNEPQKIRDYLVKISSSSKHLLELINDVLDMSKIENGKIALN 313

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
               VL +L+      I  + H  ++ + + +D        D  R+ Q+   I  NA+ F
Sbjct: 314 DEEFVLPELIEHFCTIILQQAHTRHLTLDINTDLIHEKVTGDTLRINQMLLNIAGNALKF 373

Query: 702 SSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRG 753
           +  G  + ++           G + F + + G  +P D  + +F  F    +    +  G
Sbjct: 374 TPAGGKIDIQIRELPPQYAGYGTYQFIISDTGIGMPADFIEKIFEPFERAHNSIGNKIEG 433

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLG++I ++ +++  G + + S     TT    +P K
Sbjct: 434 TGLGMAITKNIVDMMNGRIDVESEPGKGTTFTVTVPLK 471


>gi|53748095|emb|CAG38882.1| putative histidine kinase BvgS [Bordetella holmesii]
          Length = 1218

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/700 (16%), Positives = 248/700 (35%), Gaps = 60/700 (8%)

Query: 116 ENWLKFHHYIKLSKATEKLRKEG--QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
             ++         K    +R+    +   L         I+ + ++SG       + L  
Sbjct: 279 GAFMPPPPLALTEKEQRWIRRHPVVRVQALNLFPPFSMHIQGDAQLSGLS-----MDLLQ 333

Query: 174 IYSELAETTLKCKKLSNHISVFKVL----FDSLDFLVWHRDQAGDILWA----NISYKKN 225
              +LA    + +   +   + + L     D    L W +++   + ++    + ++   
Sbjct: 334 RIGQLAGLHFQIEGADSSAGMQQALQNHEADMSAGLFWSQNREDVLDFSAPYLSTAFVLV 393

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
              +          +              +        E V      +     +++VL  
Sbjct: 394 GRQDSPASSAGADFAGLRIASVPGSAASDALIQHYPHAELVPASSPND----ALLKVLGG 449

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF-HNRSFVELWEIDLA 344
             +  +   ++    + +       +   L  A A       L F   R   EL  I   
Sbjct: 450 QADVAVQTQIAANFYLRNYFRDELRVTAALNTAPA------RLAFAFARDQDELQSIVDK 503

Query: 345 FLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            LA  P+++ +    R   +    +N W  +++ I+ +  ++      +           
Sbjct: 504 ALAALPADESIYLMNRWRGESASTINTWYAYRQEIYLLVAAAVVTAAIFLAW-------- 555

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                    +++   +  +   E   +  +      ID +   V V    GR+ + N ++
Sbjct: 556 --------VVYLRRQMRQRRQAERALSDQLAFMRVLIDGIPNPVFVRDRHGRMVICNRSY 607

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-----FDDERKSLQGTL 518
              ++ +   +   T + +   T +             A+        F D   +L+G  
Sbjct: 608 LDTFQLQAEDVVGRTLLESPMRTDNPAQAARVHEQYLQAMEQEAGGPVFQDLELTLRGEK 667

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             L   +L Y+         +  + ++T+ +R    L E  E    A+  K +F+  +S+
Sbjct: 668 HYLYHWLLPYADSVGRVNGLIGGWTDLTERMRLLHDLQEAKEEADAANRAKTTFLATMSH 727

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  IIG  +L+          +Q+  V Y   S+  LL+L+ DILD++ ++A  +
Sbjct: 728 EIRTPMNAIIGMLELVLRRPPEQAVDRQALMVAY--DSARSLLDLIGDILDISKIEADKL 785

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSN 697
           +L      L  LL  V         +N + +++     ++ +   D  RL Q+ S ++SN
Sbjct: 786 ELTPVPTDLRRLLESVVNVFQGMARQNGLSLRLDIGADQVPAVSIDASRLKQVVSNLVSN 845

Query: 698 AMDFSSKGSTVI---LKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVS-----NAHR 748
           A+ F+ KG   +   ++           +V ++G  I     + +F  F        A +
Sbjct: 846 ALKFTEKGGVTVSMQVRPVEQGLARIEIAVDDSGPGISAADRRRLFEPFTQVHQEARADK 905

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G+  G GLGL+I    +   GG   +SS     T I+ ++
Sbjct: 906 GRLAGTGLGLAISRRIVQAMGGSFDLSSIPGKGTRIDVQL 945


>gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2476

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/273 (30%), Positives = 127/273 (46%), Gaps = 16/273 (5%)

Query: 533  LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            L   Q         +  RA  +L EK E L    + K+ F+ ++S+ELR+PL +++    
Sbjct: 1736 LLEEQNRRVEEKNNEVERARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNSLLILAK 1795

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  +K G+L++KQ +Y   I AS   LL+L+N+ILDL+ V+AG M++    IVL +L  
Sbjct: 1796 LLSDNKDGNLSTKQVEYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQ 1855

Query: 653  EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
             +++S      +  +   V    G       D QRL Q+   +LSNA  F+ +GS  + +
Sbjct: 1856 FIERSFLPVAEQKGLDFAVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDEGSVQLKV 1915

Query: 711  KAARDNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
            K A                   FSV + G  I  D  + +F  F         +  G GL
Sbjct: 1916 KLAEPGTHFDHEVLRRSRYVLGFSVVDTGIGIARDKQRLIFEAFQQADGSTARKYGGTGL 1975

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLSI      L GG + ++S     +T    +P
Sbjct: 1976 GLSISREIAKLLGGEIQVASEPGRGSTFTLYLP 2008


>gi|237723104|ref|ZP_04553585.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447626|gb|EEO53417.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 789

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 210/505 (41%), Gaps = 25/505 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---LAFLATNPSNDE 354
           +  + +Q      + H++   +  +D + ++ F NRS +++  +                
Sbjct: 293 QNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNRSLLQMLHLPYESGGRFYEGMMAGS 352

Query: 355 LLEFLRSA----NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           + +   +     + + +Q+  K     I       E H D +   +G+ + +        
Sbjct: 353 IFKIYYNGQDILHSMLKQVAAKGESVKIPQGAFMKEVHSDKYFPVSGEIVPIRSKDT-IT 411

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLS--NPAFRSLW 467
           G      N++ +   +  ++  V            E      P G +K    + +  ++ 
Sbjct: 412 GMALSARNISNEEMQKRFFDMAVDESSIYPWQFDMETNCFIFPQGFLKRLGYDESVTTIS 471

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + E +R      ++ I+   +R     D          + + E +  +    +++    +
Sbjct: 472 RDEMDRTIHPDDLKEISPLFNRALTGEDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQD 531

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      +    ++     AE+ + E  +   +AD++K++F+ ++S+E+R+PL  I
Sbjct: 532 ------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANMSHEIRTPLNAI 585

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF+DLL  +  G  + + +Q++  I+ +  +LL L+NDILDL+ +++G M+  ++   L
Sbjct: 586 VGFSDLLSDTS-GFTSEEIAQFIGTINKNCGLLLALINDILDLSRIESGTMEFMFAEHNL 644

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL  V  S    M    + + + + +        D  RL Q+ + +++NA  F+S G 
Sbjct: 645 PLLLKTVHDSQRLNMPP-GVELVLRMPESDKKYLTTDNVRLQQVVNNLINNAAKFTSSG- 702

Query: 707 TVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            +      D   G     V++ G  I E+  + +F RF    +  Q  G GLGLSI ++ 
Sbjct: 703 FITFGYEDDEVPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTI 760

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I    G +S++S     T    R+P
Sbjct: 761 IERLNGTISVTSEVGKGTRFTVRLP 785


>gi|23100906|ref|NP_694373.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22779140|dbj|BAC15407.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
          Length = 612

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 158/410 (38%), Gaps = 28/410 (6%)

Query: 386 ETHKDTWHLPNGQ-TLHVIVTSNPRGGTIW-MFENLTVQVDLE-TKYNTLVKVQGETIDH 442
           E  +    + NG  T  V V      G +   F +L  ++           +     + +
Sbjct: 217 EMREQALIMANGDFTQKVNVYGRDEIGQLAETFNDLNSRLKHSYATIEEERRKLSSILAN 276

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +S+GV     DG + L N A   L       L  G  + ++     +  + S+      +
Sbjct: 277 MSDGVIATDNDGSVTLMNDAAAKLIGENPEDL-IGDSVIDVLHLEGKEIDLSELHS-NGS 334

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +I  F +E              ++  +   + + +  +T      S   E+         
Sbjct: 335 MIIDFSNEDTPF----------LIRANFSTVVDEEEEVTGFITVISDVTEQQ-------- 376

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            K ++ +  FV +VS+ELR+PLT +  + + L      +      ++++     +  ++ 
Sbjct: 377 -KMEQERRDFVSNVSHELRTPLTTMKSYLEALSDGAWEN-KEIAPRFLDVTQKETNRMIR 434

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +VND+L L+ +D+  + ++         L +V         E +I ++            
Sbjct: 435 MVNDLLQLSKMDSDELPMHKQREEFTSYLYQVLDRYEMNKPE-SIHMEKNIPNTKAYVWM 493

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR ++ Q+   +++NA+ +S  G  + +K        + S+++ G  I  D    +F RF
Sbjct: 494 DRDKITQVLDNVITNAIKYSPDGGKIRVKLDIRRHYLLVSIQDQGMGIAYDKLDKIFERF 553

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                   R   G GLGL+I +  +  H G +   SS+   TTI   +P 
Sbjct: 554 YRVDKARNRKLGGTGLGLAITKELVEAHHGQIWAQSSEGKGTTILFTLPL 603



 Score = 43.0 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 20/159 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            T+ ++      IL N++  +   D +  +   N +  +L   +   L      D +++ 
Sbjct: 261 ATIEEERRKLSSILANMSDGVIATDNDGSVTLMNDAAAKLIGENPEDLIG----DSVIDV 316

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           L    K  +     +    I        +++DT  L       V+       G I +  +
Sbjct: 317 LHLEGKEIDLSELHSNGSMIID-----FSNEDTPFLIRANFSTVVDEEEEVTGFITVISD 371

Query: 419 LTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
           +T Q  +E            +  T +      ++ LS+G
Sbjct: 372 VTEQQKMEQERRDFVSNVSHELRTPLTTMKSYLEALSDG 410


>gi|167746930|ref|ZP_02419057.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662]
 gi|167653890|gb|EDR98019.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662]
          Length = 812

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 160/399 (40%), Gaps = 35/399 (8%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSLWKTEENRL 474
           +NL+ +  LE +       +   I  +  G A    +    +      F  +    E + 
Sbjct: 144 DNLSPEYKLEKRDRE----REAIIRTIPGGFARVDAEDLRTVIWYGGGFLQMIGYTEEQF 199

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV----LEYSI 530
                   + + C   + +     +     +    E  + +G +      +    + +S 
Sbjct: 200 EN-----ELQSKCDYVHPDDIERTVEIMEKSRETGEDTAAEGRIVTRDGKIKILTMTFSY 254

Query: 531 IPLPNAQ---------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +   ++           +       +  R + AL +  +A R A+  K +F+  +S+++R
Sbjct: 255 VSAKDSWDGKDSFYSIGIDITKEREEQERQKTALQDAYQAARVANAAKTNFLSSMSHDIR 314

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+G   + + +       K    +  I+ SS  LL+L+N++LD++ +++G + ++
Sbjct: 315 TPMNAIMGMAAIAQANL--ECPDKIQDCLNKINTSSRHLLSLINEVLDMSKIESGKINIS 372

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              I L D++  V       ++  + + ++ I        +AD  RL Q+   ++SNA+ 
Sbjct: 373 LEQISLPDMIGAVMDMCLPLINGKHQQFQMSIGHVNHEHVIADGDRLRQVLMNLISNAVK 432

Query: 701 FSSKGSTVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRR 752
           ++ +G T+ L+             + F   + G  I E+    +F  F         + +
Sbjct: 433 YTPEGGTITLRINEQYSPNPKKSQYEFICIDTGIGISEEFLPHIFEPFSRAEDSRISKIQ 492

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLG++I E+ + +  G +S+ S     +     +P +
Sbjct: 493 GTGLGMAITENIVRMMNGTISVESKIGTGSKFTVSVPLE 531


>gi|160940248|ref|ZP_02087593.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436828|gb|EDP14595.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1118

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 111/689 (16%), Positives = 257/689 (37%), Gaps = 86/689 (12%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV--WHRDQAG--DILWANIS----- 221
           ++ +Y ++  +    ++L     +   ++D++   +  + RD  G   ++  N +     
Sbjct: 286 VNSLYLDVTRSEEDAQRLREQTQLLTSIYDTVPCGIIRFVRDIEGGYRLVSINRAVLNLM 345

Query: 222 -YKKNTETEGI----VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            YK   E        V    + E R + +E  +K        ++ +         G+   
Sbjct: 346 GYKDMEEGLNDWHDGVLGAVLEEDRLILQEAYRKLREIGDRQDQEYRVRWK---DGSIHW 402

Query: 277 YKIVRVLNSFGEAG------IAIDVSKEITVNDQLTHTYEILH---NLTVAIAIF----D 323
            +   ++      G       A+D+++   + +QL    E+      ++ A+ +F    D
Sbjct: 403 LEGTSMVVGVTPQGEDILQRTAVDITQRKILQEQLEREQEMYRVSMEVSSAV-MFEYRMD 461

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLPEQLNWKTWKENIF-- 379
           ++ ++ +                      +EL ++ R+    ++    +  T  +NI   
Sbjct: 462 EDVFISY------------EPKTGQGVLRNELRDYSRTLLKRQVVHPDDVPTVIDNICNG 509

Query: 380 --SVYK------SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
              V++        E     WH  N + +      +   G +    ++  ++   ++   
Sbjct: 510 RSEVFEVRVSVPGGEPGTYIWHRVNSRLMMENGKPSRVVGALHNIHSMKSKLSENSERLY 569

Query: 432 LVKVQGETIDHLSEGVAVFG--------------PDGRIKLSNPAFRSLWKTEENRLSPG 477
           + +   + I+ +   +                    G +   N  + +   +        
Sbjct: 570 MSQSALQAINGVYMSIFYVNLPEDSYYAVRLPEVRGGAVLPRNGCYSTELCSYILSDVDQ 629

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVLEYSIIPL 533
              + + + C R +   +       I   F      L   LE+      +     +II L
Sbjct: 630 ADRKRVMSICEREWLLGELAGGNEHIEVEFRHGFSPLWLRLEVHMVASKEGRPRTAIIAL 689

Query: 534 PN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            N  A+         +  +A+ AL E  ++L +A++ K+ F+  +S+++R+P+  I+G T
Sbjct: 690 RNISAEKQRELEYYDEEKKAKHALEEAYDSLNRANQAKSDFLSRMSHDIRTPMNAIMGMT 749

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            + +++   +   K    +  IS S + LL+L+N +LD++ +++G + L+     L +L+
Sbjct: 750 AIAQSNL--NNRDKIEDCLSKISLSGSHLLDLINKVLDMSKIESGNVGLSEDAFCLEELV 807

Query: 652 NEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            EV   +   M      + +   +    +   D  R+ QI   +LSNA+ ++S    + +
Sbjct: 808 EEVSLIVKPDMDSKGQELSISLKEIDHHAVYGDAVRVKQILINLLSNAVKYTSDRGHIAV 867

Query: 711 KAARD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVE 762
                       G F F V+++G  +  +  + +F  F         Q +G GLGL+I  
Sbjct: 868 SLEEKLSSESGVGCFEFVVEDDGIGMAPEFLEKLFMPFERAEDSRVSQVQGTGLGLAITR 927

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + + +  G + + S     T     I  K
Sbjct: 928 NLVQMMNGTIRVESQLNRGTRFIATIYLK 956


>gi|39656325|gb|AAR29885.1| putative histidine kinase HHK6p [Cochliobolus heterostrophus]
          Length = 1364

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/565 (17%), Positives = 211/565 (37%), Gaps = 65/565 (11%)

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSK-----EITVNDQLTHTYEILHNLTVAIAIFDQ 324
            +G    ++        G   +  DV++        +         I + + V +     
Sbjct: 418 VNGEPVFHE--ETGEFLGGIVVFKDVTEYTQKIAEQIEQNEKQFEYITNFMPVMVWTTTP 475

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYK 383
           +    + ++ + +   + +             + L    +LP    +     E  F   K
Sbjct: 476 DGMHDWFSKRWYDYTGLTVD------------KSLGEGWRLPFHPDDMHATAERWFHSLK 523

Query: 384 SSETHKDTWH--LPNGQTLHVIVTSNP---RGGTI----WMFENLTVQVDLETKYNTLVK 434
           + + +   +     +GQ   ++  + P     G I        ++   V    +     +
Sbjct: 524 TGDEYNTEYRCQRFDGQWRWMLGRAVPFYDDAGRIVKWFGTCTDIHDLVLARQEARQTRE 583

Query: 435 VQGETIDHLSEGVAVFGPDGRIKL------SNPA-----------FRSLWKTEENRLSPG 477
              + I H    + V   + R+K+      +N             +     T+ NR    
Sbjct: 584 QLQQVIQHAKIVLWVIDRNNRVKVLEGDIDANEHLSKDQLLGKDVYDVFEFTDNNRERWR 643

Query: 478 THIRNIAATCSR----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
             I+ I                    +   +       ++     +   D V+  S   +
Sbjct: 644 GPIQEILQGKQSDEIVNGGYMSENRYYRTRLVPLMSTSRTAGIESQAFVDGVIGVS---M 700

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              +       + +  +    L     A ++A  +K+ F+ ++S+E+R+P+  +IG ++L
Sbjct: 701 DITELREREEQLKEQEKENSRLLANEAAAKEASRMKSQFLANMSHEIRTPIAGVIGMSEL 760

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L       LN +Q +  E I  S+  LL ++NDILD + V++G + +      L+ +L +
Sbjct: 761 LFDM---DLNEEQKECAENIHRSANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRD 817

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGST-VI 709
           V + +A   +   +  + +   ++ S    + D  RL QI + +L+N++ F+S G+  + 
Sbjct: 818 VNKMMAFAANRKGLEYQSLIQDEVQSDLRVIGDPGRLRQILTNVLTNSIKFTSVGTVQLS 877

Query: 710 LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           +  + +  + +   FS+ + G  I E++ K +F  F        RR  G GLGL+I ++ 
Sbjct: 878 VSISHETKETVTVNFSIVDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNL 937

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           + L  G + + S     TT    IP
Sbjct: 938 VELMKGQIWLDSKLGQGTTATFWIP 962


>gi|283782020|ref|YP_003372775.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440473|gb|ADB18915.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 926

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 131/275 (47%), Gaps = 9/275 (3%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S++ L      L +  + +    V    +A +AL        +A+  K+ FV ++S+E+R
Sbjct: 452 SEAELRRYATMLEDTNSYVENQAVEMQFQA-KALEAARSEAERANHTKSQFVANMSHEIR 510

Query: 582 SPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +P+T I+G+ D+L        ++ K  Q +  I ++   LL ++NDILD++ ++AG + +
Sbjct: 511 TPMTAILGYVDMLLDDADAHPVSEKWKQPLATIKSNGQHLLEIINDILDISKIEAGKLTI 570

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
                 +  L+ +V   +  +     + + V  +  +  +  +D  R+ Q+   ++ N++
Sbjct: 571 EIIECSVPQLVGDVTNLLRHRAEGKGLALAVKFNSPIPETIHSDPTRIRQVLLNLVGNSI 630

Query: 700 DFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
            F++ G   V L+   D+ +      SV ++G  + ++    +F  FV       RR  G
Sbjct: 631 KFTNHGEVRVELEMFYDDPENPQLQLSVVDSGIGMDDEQIARLFQPFVQADSSTTRRFGG 690

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL+I +    + GG +++ S     ++   RI
Sbjct: 691 TGLGLTITKRLAEMLGGSITVKSQIGHGSSFIVRI 725


>gi|323698979|ref|ZP_08110891.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio sp.
           ND132]
 gi|323458911|gb|EGB14776.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 672

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 143/307 (46%), Gaps = 15/307 (4%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-----EYSIIPLPNAQTMLTFVNVTD 547
           ++   +   ++  + DD R+S++  +  L ++       + S+      +T         
Sbjct: 208 DTSASNELGSLARAIDDMRQSVRHLIRDLQEANAKLQNHQNSLESTVKERTEELKRKNDS 267

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              A   +    +A   A+  K+SF+  +S+E+R+P+  I+G  D+L  ++   L+  Q+
Sbjct: 268 LNGALEQVRRAKQAAEVANAAKSSFLASMSHEIRTPMNAILGMADILWETE---LSEDQA 324

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV+    +   LL +++DILDL+ ++AG + L  +   L ++L+     I TK  +  +
Sbjct: 325 RYVDVFRTAGENLLEILDDILDLSKIEAGHLTLEKTWFPLTEILDRTCGVIQTKASKKGL 384

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FS 722
            +  ++  ++ +    D  RL Q+   +L NA+ F+  GS    V + +  D G  + FS
Sbjct: 385 GLSCVAAPEVPARINGDPTRLRQVLFNLLGNAIKFTDAGSVAMNVDIASRDDEGVVLHFS 444

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G  +  D   ++F  F        R   G GLGL+I +  + + GG +   S+   
Sbjct: 445 ITDTGVGVSGDKLGAIFEAFTQADSSTTRQFGGTGLGLAISKELVQMMGGRIWAESTPGK 504

Query: 781 VTTINCR 787
            +T +  
Sbjct: 505 GSTFHFT 511


>gi|220929523|ref|YP_002506432.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999851|gb|ACL76452.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 598

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/358 (22%), Positives = 162/358 (45%), Gaps = 24/358 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I+ +  G+     + +I + N     ++  +      G ++ +I          S    
Sbjct: 259 VINSMMNGIIAIDNNSKIIIINTTACDIFGVQYGPGIIGKNLIDITR-------NSKVNS 311

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---- 554
           L           R++++  + L+ + V+    + +     + T    +   R + A    
Sbjct: 312 LL----------RQTIRNDISLIDEIVIFSPSLGIDKIYRIYTNTIKSSDTRQQTAGAVI 361

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                 ++RK ++I+  FV +V++EL++PLT+I GF + LK   +         +++ I 
Sbjct: 362 TLNDITSVRKLEQIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIEDTTVAVK-FLDIID 420

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L+ND L L+ ++A     +   I L  +++EV   + +   + NI ++V+++
Sbjct: 421 IEAERLYMLINDTLQLSEIEAMRKDDSVMKIDLIQIIDEVVLILKSSADKKNIALEVLAN 480

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                 +A+R R+ Q+   ++ NA+ ++ +   + +K+ + NG+ + SVK+ G  IPE  
Sbjct: 481 SAEVPVIANRNRIKQMLINLIDNAIKYNVENGKIYIKSEKANGNTVISVKDTGIGIPEKH 540

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F RF            G GLGLSIV+  +NL+ G ++I S     T    ++P 
Sbjct: 541 HSRIFERFYRVDKGRSRNMGGTGLGLSIVKHIVNLYSGDINIISEPGKGTEFIVKLPL 598


>gi|313204634|ref|YP_004043291.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes
           WB4]
 gi|312443950|gb|ADQ80306.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes
           WB4]
          Length = 1000

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 123/257 (47%), Gaps = 3/257 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            AQ        ++     R L  +   L +A  +K +F+ ++S+ELR+PL ++I  + +L
Sbjct: 452 EAQKTEMEAQSSELAEQNRELEMQKIQLHEASRLKTNFLSNMSHELRTPLNSVIALSGVL 511

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                  + + +  Y+E I  +   LL+L+NDILD++ +++G  +++ S  ++ +L+ ++
Sbjct: 512 SRRLNEKIPADELSYLEVIERNGKHLLSLINDILDISRIESGREEVDVSKFIVEELVTDI 571

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              I  +  + NI +   +  K     +D  +   I   ++ NA+ F+ KGS V +   +
Sbjct: 572 VSIIKPQAQQKNIDLIKATISKDIVITSDIDKCRHILQNLVGNAVKFTEKGS-VSIDVVK 630

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
                  SV + G  I E     +F+ F         +  G GLGL+I + + NL GG V
Sbjct: 631 TQNAIEISVTDTGIGIAESNIDHIFDEFRQADGGTSRKFGGTGLGLAIAKKYANLLGGTV 690

Query: 773 SISSSDEGVTTINCRIP 789
           ++ S     +T    +P
Sbjct: 691 TVKSILGEGSTFTLSLP 707


>gi|281356192|ref|ZP_06242685.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317561|gb|EFB01582.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1318

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 161/380 (42%), Gaps = 28/380 (7%)

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            + + +       ++Q   +D+++  V +F   GR+   N             +       
Sbjct: 800  RRNQDMLVRQKERMQSILLDNMNIPVLLFDTAGRMLSMNNEVVKALGLSAEEV------- 852

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA----- 536
             +   C + +   D +     +  +     K+       L+    E + IP+ +      
Sbjct: 853  -LKRPCYQVFCRHDTYPRHCPVQQALRTGEKAFHSF--SLNGHDYEVTAIPVLDEAGKVV 909

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              +   V+VT     +R   E  E  R+A + K++F+  +S+E+R+PL +IIGF++LL+ 
Sbjct: 910  NVLECAVDVTRQKELQRRTAEALELTRQAYQTKSNFLAMMSHEIRTPLNSIIGFSELLQA 969

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +     + +   Y   I+ +   LL L+ND+L+++  +A ++++    +  N LL E+  
Sbjct: 970  T--SPDSEELHDYAANINTAGQTLLQLINDVLEISRFEADLVEIPLEWVDFNRLLAEIGS 1027

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---- 712
                   +  +  ++ +  +L     +  RL QI   ++ NA+ F+ KG  + + A    
Sbjct: 1028 IFKHMARKKGLDFRIEAPAELPEIYLNDARLRQILLNLVGNAVKFTEKGG-ISVSADFRA 1086

Query: 713  -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-----RGQRRGVGLGLSIVESFIN 766
                +G    +V++ G  I   +   +F+ FV              G GLGLSIV+  ++
Sbjct: 1087 TDSGHGRLEITVRDTGIGIDPGLHSRIFDPFVQADEGAVRGNRTTNGTGLGLSIVKRLLD 1146

Query: 767  LHGGHVSISSSDEGVTTINC 786
              GG V++ S     +T   
Sbjct: 1147 KMGGSVTLESIPGTGSTFRI 1166



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 30/222 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
               ++      I  +L + I + D+N  L                 L  +   ++    
Sbjct: 378 RQAREKDRVNAAIFRSLPLQITVLDRNLNL-----------------LVRHRDVNQPPVP 420

Query: 359 LRSANKLPEQLNWKTWKE---NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RG 410
            R A  L + L+ +T ++    +  V+++  +    +   +G+   +++   P     R 
Sbjct: 421 YRQATTLLDSLSRQTLEQITPQVEQVFRTGRSVSFDYD-SDGEWRRMVIYRLPVSIMGRE 479

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSLWK 468
             + +  N+  +   E + +T  ++    +DH+   V    PD   R    N     +  
Sbjct: 480 CVLCISLNIDRERKAEEQTHTANRLLQAILDHIPAIVQGKDPDDDYRYVFWNRTSERVSG 539

Query: 469 TEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
             E  +       I  +A    R   E         ++   D
Sbjct: 540 LPEKTVLGKRDCDIPGMAEIADRLREEDLAVPPDGQLVERTD 581



 Score = 46.1 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 18/155 (11%)

Query: 291 IAIDVSKEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +AI    +  +  Q      IL  N+ + + +FD    +   N   V+   +    +   
Sbjct: 796 LAITRRNQDMLVRQKERMQSILLDNMNIPVLLFDTAGRMLSMNNEVVKALGLSAEEVLKR 855

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           P               P Q              ++ E    ++ L NG    V       
Sbjct: 856 PCYQVFCRHDTYPRHCPVQ-----------QALRTGEKAFHSFSL-NGHDYEVTAIPVLD 903

Query: 410 --GGTIWMFE---NLTVQVDLETKYNTLVKVQGET 439
             G  + + E   ++T Q +L+ +    +++  + 
Sbjct: 904 EAGKVVNVLECAVDVTRQKELQRRTAEALELTRQA 938


>gi|160886260|ref|ZP_02067263.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|260173623|ref|ZP_05760035.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921886|ref|ZP_07918126.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108145|gb|EDO09890.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|313695761|gb|EFS32596.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 869

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 218/513 (42%), Gaps = 41/513 (7%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  + +Q      + H++   +  +D + ++ F NRS +++  +         S     E
Sbjct: 373 QNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNRSLLQMLHLPYE------SGGRFYE 426

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN--PRGGTIWM 415
            + + +       +   ++ + S+ K   +  ++  +P G  +  + +    P  G I  
Sbjct: 427 GMMAGSIF---KIYYNGQDILHSMLKQVASKGESVKIPQGAFMKEVHSDKYFPVSGEIVP 483

Query: 416 FE--NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV----FG--------PDGRIKLS-- 459
               +    + L  +  +  ++Q    D   +  ++    F         P G +K    
Sbjct: 484 IRSKDTITGMALSARNISNEEMQKRFFDMAVDESSIYPWQFDMETNCFIFPQGFLKRLGY 543

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           + +  ++ + E +R      ++ I+   +R     D          + + E +  +    
Sbjct: 544 DESVTTISRDEMDRTIHPDDLKEISPLFNRALTGEDSNTRLNFRQRNVNGEYEWWEYRSS 603

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +++    +           +    ++     AE+ + E  +   +AD++K++F+ ++S+E
Sbjct: 604 VITGLTQD------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANMSHE 657

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL  +  G  + + +Q++  I+ +  +LL L+NDILDL+ +++G M+
Sbjct: 658 IRTPLNAIVGFSDLLSDTS-GFTSEEIAQFIGTINKNCGLLLALINDILDLSRIESGTME 716

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNA 698
             ++   L  LL  V  S    M    + + + + +        D  RL Q+ + +++NA
Sbjct: 717 FMFAEHNLPLLLKTVHDSQRLNMPP-GVELVLRMPESDKKYLTTDNVRLQQVVNNLINNA 775

Query: 699 MDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
             F+S G  +      D   G     V++ G  I E+  + +F RF    +  Q  G GL
Sbjct: 776 AKFTSSG-FITFGYEDDEVPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGL 832

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI ++ I    G +S++S     T    R+P
Sbjct: 833 GLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|86138545|ref|ZP_01057118.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. MED193]
 gi|85824605|gb|EAQ44807.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. MED193]
          Length = 793

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 162/398 (40%), Gaps = 31/398 (7%)

Query: 416 FENLTVQVDLETKYNTLVK-------VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           F + T +  L+T+  T               I  + EG A++  D  +   N  +  L+K
Sbjct: 120 FVDATERKQLQTRMKTAQAEAETVKARFEHAISSIPEGFAMYDRDDVLVAFNAKYAELYK 179

Query: 469 TEENRLSPGTHIRNIAATCSRY--YNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSV 525
             E  +  G    +I      +  Y E+ G +  A +    D E RK       L     
Sbjct: 180 HTEPAIKVGATFESIMRYGLEHGQYPEAKGQEE-AWLAERLDRENRKRAPVERRLPGGKF 238

Query: 526 LEYS--------IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L           +I L +  T           +A + L + NE    A   K+ F   +S
Sbjct: 239 LRIQEVENERGDLIGLRSDVTQYYQQQQELEQKA-KDLAKANEEAEAASLSKDRFFARMS 297

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+  I+G  ++L+ +   +LN +Q  Y++ IS S+T LL+++NDILD +    G 
Sbjct: 298 HELRTPMNGILGLAEVLEHT---ALNPQQRSYLKTISGSATSLLSIINDILDYSKATEGK 354

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
                    L D + E    I    H+ N+   +     +   F  D  R+ Q+    L 
Sbjct: 355 FTFANERFSLKDTIYEAAGLIQPLAHDKNLDFWIEYPLTVPTHFFGDSARVRQVLLNHLG 414

Query: 697 NAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
           NA+ F+  G  V L+AA      +     S+ + G  IPE+   ++F+ +       +  
Sbjct: 415 NALKFTQNGH-VGLRAAYQTVDGDAQLSLSIVDTGRGIPEEQMDTLFSAYEQANQETEIA 473

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I ++ +   GG + + S+    +     +
Sbjct: 474 VEGTGLGLAISKALVEQMGGAIHVVSTIGKGSCFTVSL 511



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 73/234 (31%), Gaps = 28/234 (11%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR-----MISSSALEKNFCET 265
            +  ++W N +  +        +Q     S  LF +E         +    A        
Sbjct: 30  SSAKVVWGNAALSRIFHHSHETWQ---HRSPLLFLDEATTDFLQKGLKEQQASPIRLRNA 86

Query: 266 VSTLEHGNNKS-YKIVRV------LNSFGEAGIAIDVSKEITVNDQLT-----------H 307
           ++    G +   + +         +      G  +D ++   +  ++             
Sbjct: 87  LNIPVAGQDTLCFDLEVTFLAQENIEDTHVFGRFVDATERKQLQTRMKTAQAEAETVKAR 146

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               + ++    A++D++  L   N  + EL++     +    + + ++ +     + PE
Sbjct: 147 FEHAISSIPEGFAMYDRDDVLVAFNAKYAELYKHTEPAIKVGATFESIMRYGLEHGQYPE 206

Query: 368 QLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
                + W               +   LP G+ L +    N RG  I +  ++T
Sbjct: 207 AKGQEEAWLAERLDRENRKRAPVE-RRLPGGKFLRIQEVENERGDLIGLRSDVT 259


>gi|145299703|ref|YP_001142544.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852475|gb|ABO90796.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 698

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 155/380 (40%), Gaps = 21/380 (5%)

Query: 419 LTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           L  QV+L+T    T  +         S+       + R+     ++ S      + L   
Sbjct: 186 LQEQVELKTLALQTSEQRFRSFAGMASDWFWETDTEHRL-----SYVSAPGYHGDVLVHQ 240

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                      R   E   +    A+       R  +     +     +E +  P  +A 
Sbjct: 241 PGQSLYDYAYDRRDPEWGKYRRLIALHLPVRAVRAQVSL---VKGPCWMEINAEPCFDAA 297

Query: 538 TML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            +      T  +V + +R E+ L    +    A+  K+ F+  +++E+RSP+  ++G  D
Sbjct: 298 GVFIGYRGTARDVGNQIRREQELARARDEAEAANRAKSQFLAMMTHEIRSPMNAVLGMLD 357

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ ++   L  +Q   + + + S+ +L  +++D+LD + +++  ++ +  T+    L  
Sbjct: 358 LLQHAQ---LEPQQQTLLGHATHSARLLQTIIDDVLDFSKIESHTLEFHCETLHPTQLCQ 414

Query: 653 EVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            + + +  +     I ++ + D         D  RL Q+ S +L NA+ F+S+GS V L+
Sbjct: 415 SLIEPLQARASSKGIILRWLVDEAVPPQLQGDPVRLSQVISNLLGNAVKFTSQGS-VSLQ 473

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
               +     SV + G  I  +    +F  F        RR  G GLGL+I +  + L G
Sbjct: 474 LGWRHERLRVSVTDTGIGISAEDQALLFEPFSQVDSSATRRFSGTGLGLAISKRLVELMG 533

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S+    +     +P
Sbjct: 534 GEIRLQSAPGQGSCFWFELP 553


>gi|168004942|ref|XP_001755170.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162693763|gb|EDQ80114.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 336

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 10/230 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K+ F+ ++S+E+R+P+  IIG   L   +    L  +Q +++E ++ S+  LL++
Sbjct: 2   EASRAKSEFLANMSHEIRTPIHGIIGMASLALET---DLTDEQREHLETVAQSADCLLHI 58

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           VN ILDLA ++AG ++L      + D +    + +  K ++  +R+    D  +    + 
Sbjct: 59  VNAILDLAKIEAGRVELERVQFSVFDTVASTIKMLQVKANQKQLRVSWEVDPDIPAHLIG 118

Query: 683 DRQRLLQIFSKILSNAMDFSSKG---STVILKAARDNG-DFIFSVKNNGSSIPEDMCKSV 738
           D  RL Q    ++ NA+ F+ +G   S    K  RDN    +FSV++ G  I ++  K V
Sbjct: 119 DAGRLQQCLINLVGNAIKFTQEGSLASQTETKVDRDNKVTLLFSVQDTGIGISKEKQKEV 178

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           F  F        R   G GLGLSIVE  + + GG + + S     +T   
Sbjct: 179 FKAFSQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWLESEPGKGSTFYF 228


>gi|320104503|ref|YP_004180094.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751785|gb|ADV63545.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 867

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 209/544 (38%), Gaps = 48/544 (8%)

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
             + G   +A   S+       +    E IL+   V +   D    + + N +  ++  +
Sbjct: 9   PKAIGSNPLADPASESPDSQTTVRLDSERILNQTAVGLIALDSKGTILYANPAAAKILGL 68

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
               +       + L+ +       E    +   + +      + T K  +   +G  + 
Sbjct: 69  SQEHVL-GCCYYDFLDPV-------EVEQVRKRHQGLMEGRLPAYTAKKRFRRRDGDVVE 120

Query: 402 VIVT----SNPRGGTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            + T      P   +  +     + T+   +E +  +        + H      +    G
Sbjct: 121 TLTTAISAPVPELNSKILISQSIDFTMLKWVEYELYSSRTRFESFMRHAPVCGWIEDGRG 180

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW------------DLFAA 502
           R+  +NP    L   EE+ LS G    +  +      N +D              +    
Sbjct: 181 RLSQANPQLLKLLNLEESSLSVGNDPDHAISIGQLPLNLADWCLEPLPPVVDHPIETLTP 240

Query: 503 IITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           I  +  D R+ L     L L +   E S +   +       +++TD  RA+  L +    
Sbjct: 241 IQNALGDRRELLICRFPLNLPEHENEGSPLVTESQNVGGVGIDLTDLRRAQAELEQARRT 300

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A++ K +F+ H  +E+R+PLT I+GFT++L        + + ++ +E I ++ + L 
Sbjct: 301 AEQANQAKTAFLAHFGHEIRTPLTAILGFTEVLHERLGH--DPQSAEALEAIQSAGSHLK 358

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ND LDL+ +++G ++L  ++I   +L  EV      +     IR+ V ++      V
Sbjct: 359 MLLNDFLDLSKIESGKLELAPTSIDPWELAVEVATINQGQAQAKGIRLGVEANASTPLLV 418

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----------FIFSVKNNGSS 729
             D  RL Q+   ++ NA+ FS +G  V +       +            ++ V++ G  
Sbjct: 419 HVDTTRLRQVLFNLVGNAIKFS-QGGDVTISLIGSEPNASDSDTDGRSTLVWQVRDQGPG 477

Query: 730 IPEDMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           +  D    +F  F        R     G GLGL I +S + L GG + + S     TT+ 
Sbjct: 478 MTADQVARLFEPFHQVGTANPRDTLSSGSGLGLVISKSLVELMGGTIQVVSHPGRGTTVQ 537

Query: 786 CRIP 789
             +P
Sbjct: 538 FELP 541


>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040090|gb|ACT56886.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/497 (20%), Positives = 212/497 (42%), Gaps = 26/497 (5%)

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLE--FLRSANKLP 366
           E +    +   ++  +  L + N SF+ L +   +  +        LL+   L   N + 
Sbjct: 324 ETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV--------TSNPRGGTIWMFEN 418
             + +++   +   +  S+  H   W+  N   +  I          + P+ G     E+
Sbjct: 383 PVMLYRS---DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP--ED 437

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +++       ++++    ++  S+G+A+   +G I  +N A   L+      +    
Sbjct: 438 VDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
               +        N      L   +  + +          +LLS  ++   I  LP +  
Sbjct: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSC 553

Query: 539 ML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
              T  ++++  + +  L+   +   K    K+ F+  VS+E+R+PLT IIGF++++K  
Sbjct: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613

Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + G L N +  +Y  YI  S  ++L++VND+LD++ +++G M L++  + L++ ++E   
Sbjct: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
            +    +E  I I+      +   +AD + + QI   ILSNA+ F+  G  +I+      
Sbjct: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           N + I  V++ G  +     +     F    +  Q R  G GLGL + ++ ++ + G   
Sbjct: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793

Query: 774 ISSSDEGVTTINCRIPS 790
           I S+    T I    P 
Sbjct: 794 IFSTPAKGTLIEIIFPL 810


>gi|254828075|ref|ZP_05232762.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
 gi|258600459|gb|EEW13784.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
          Length = 591

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 155/369 (42%), Gaps = 29/369 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEGTFETKTIQQKEIILYFPREMILDASVSPILGENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKN 462

Query: 667 IRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           I++ +I +  + S     DR +L QI   +LSNA++++     V +K      + I  V 
Sbjct: 463 IQV-IIPEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIEQEAEAIIEVT 521

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +
Sbjct: 522 DNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGS 581

Query: 783 TINCRIPSK 791
           T    +P K
Sbjct: 582 TFRVTLPKK 590


>gi|77917671|ref|YP_355486.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77543754|gb|ABA87316.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 867

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 103/525 (19%), Positives = 193/525 (36%), Gaps = 75/525 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPS 351
             E  +         I++   + + +     +    L   N +  ++ ++DL  L     
Sbjct: 374 EAEEALRKSEESFRNIINFSPMGVLLLHLYPNNQLILTGSNTAAKDILKVDLDALV---- 429

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--------PNGQTLHVI 403
                       K  E+      K  +   Y+   T    WH         P   +  V 
Sbjct: 430 -----------GKTIEEAFPGLTKTCVPEQYRRVCTLGTPWHCQQIDYKEPPIHGSYEVH 478

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRI 456
                       F N++ ++  E              +     +  +S+G+     D RI
Sbjct: 479 AFQTAPRRMACFFWNISERIQAEQAIKEALTNARQAREQLETILKSVSDGLLFTDLDNRI 538

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L + +   L                               D+F   ++   D    L+ 
Sbjct: 539 MLMSHSAEELLGVP-------------------------LHDVFGLQVSQVIDNDTLLKR 573

Query: 517 TLELLSDSVLEYSII---PLPNAQTMLTFVNVTDSVRAERALTEKNEAL-------RKAD 566
              + SD   E S+I   P P    + T      +VR+E  L      L       R+ D
Sbjct: 574 LQAVASDKQEETSVIINLPEPGTDKVQTVQASLAAVRSEEGLKRGVITLLRDISRERELD 633

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K  F+   ++ELR+PLT++IGF++++     G L  +Q++++  I   + +L  +V D
Sbjct: 634 LMKTEFISTAAHELRTPLTSVIGFSEVMLQQ--GGLTEQQTEFLSIIHKKAEVLGKIVED 691

Query: 627 ILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +LDLA VD G  ++L      +N +L            ++  R K +        + D +
Sbjct: 692 LLDLARVDTGQVIRLKKDWADVNGILARSVSDYRRVCQDH--RFKTVLPDAPIEMLVDDR 749

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           +L Q+   +LSNA+ FS   S + +     + +   +V + G  +       +F++F   
Sbjct: 750 KLFQVMENLLSNAVKFSPVDSLIQVTCQLADNELYIAVSDQGIGMQPAQIDRMFDKFYRV 809

Query: 746 AHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 R G+GLG++IV+S +  H G + ++S     TT+   +P
Sbjct: 810 DASNTAREGLGLGMAIVKSIVEAHNGRIWVTSKPNRGTTVTFTLP 854


>gi|242373982|ref|ZP_04819556.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
 gi|242348336|gb|EES39938.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
          Length = 565

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 163/379 (43%), Gaps = 40/379 (10%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +L  +   L   Q         T++++   V +    G I ++N A+  ++ + E  +  
Sbjct: 210 ELARRLQKLNNRQKIQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYEVF-SPEQIVEN 268

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK---SLQGTLELLSDSVLEYSIIPL 533
            ++I  +  +  +             II SF  E+     ++  +  +     + S +P+
Sbjct: 269 KSYIGFLDDSIEKL------------IIESFRTEKVIYDQIEVDINNVHTKYFDVSCVPI 316

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +         V         +      L+K + ++  FV +VS+EL++P+T+I GF + 
Sbjct: 317 LSKSKKKLQGMVV--------VLHDITNLQKLENLRREFVANVSHELKTPITSIKGFAET 368

Query: 594 LKTSKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           L     G+ N +Q    ++  I   S  + +LV D+LDL+ ++    ++  S + L++L 
Sbjct: 369 LIE---GAKNDEQSLEMFLNIILKESNRIESLVMDLLDLSHIEQQN-EIETSYMNLSELA 424

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                ++ T+    NI IK   +  +    A   ++ Q+ + +LSNA+++S + S VI++
Sbjct: 425 YNTIDNLQTQATNKNIEIKSEIEKDVI-IEAHENKVAQVITNLLSNAINYSLEDSKVIVR 483

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
             R+       +++ G  I     K +F RF            G GLGLSI +  +  H 
Sbjct: 484 VYREGKKVNLEIQDFGIGISAKDQKHIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHN 543

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S+SS     +T     
Sbjct: 544 GRISVSSKPGEGSTFKVTF 562


>gi|307592105|ref|YP_003899696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985750|gb|ADN17630.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 816

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/567 (17%), Positives = 209/567 (36%), Gaps = 69/567 (12%)

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           V            V+ ++   +  T    +L++L V I        L   N +F+ L  +
Sbjct: 110 VRLPAAVQAALERVAAQVKAANLQTRIQTLLNHLNVGIYRLTAKGLLLEANPAFLRLLGL 169

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
               +   PS   L  +        E  ++      +    ++ E         +G T  
Sbjct: 170 QS--ITEIPSTHSLQAYF-------EPDHYTELLAQLTQNGEAQEREIQLRC-ADGGTRW 219

Query: 402 VIVTSN-----PRGGTIWMFENLTVQVDLETKYNT----------LVKVQGETIDH---- 442
           V +++             + E++T +   + +  T            ++   ++D+    
Sbjct: 220 VKISTTFTQESSDIIIEGLMEDITERKQAQARAETEKQRFQFLANASRLFASSLDYHLTL 279

Query: 443 ----------LSEGVAVFGP--------DGRIKLSNPA-----FRSLWKTEENRLSPGT- 478
                     L++ + V           D  I  +           L +        G  
Sbjct: 280 KNLVNLVVPTLAD-ICVIDLVEPTKLVFDEPIVAATDPSLSALMLELRQNYPLSADYGAV 338

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-----SLQGTLELLSDSVLEYSIIPL 533
            + NI  +  ++Y  S  W   A         +K     S+   + +   +    ++I  
Sbjct: 339 KLLNINQSELKHYVSSSVWQEIAQDARHLTILQKLGIQASMAVPMIVHDRNFGTITLIST 398

Query: 534 PNAQTMLTFVNVTDSVRAERALT-----EKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             ++T            A RA          +  ++A++IK+ F+  VS+ELR+PL  ++
Sbjct: 399 KTSRTYDHTDLALAQELARRAAIALDNAYLYQQAQQANQIKDEFLAIVSHELRNPLNAML 458

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++ LL   +    ++  +Q +  I  ++ +   L+ D+LD++ +    + ++   + L 
Sbjct: 459 GWSQLLHKREFE--DTMVNQAITIIERNALLQKKLIEDLLDISRIIQNRLHISREPVYLI 516

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L++ V  ++   +    I I    D        D  RL QI   +LSNA+ F+S G  +
Sbjct: 517 PLIDTVIDTLRPNIKAKAIEISSNLDTSTKPVFGDAYRLEQIVGNLLSNAIKFTSTGGKI 576

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            ++ +++      +V + G  I  +    +F RF        R   G+GLGL+IV   + 
Sbjct: 577 NVQLSQEGSLAKITVADTGQGISPEFLPFIFERFRQADPSKTRSQSGLGLGLAIVRHLVE 636

Query: 767 LHGGHVSISSSD-EGVTTINCRIPSKE 792
           LHGG V  +S       T   ++P+++
Sbjct: 637 LHGGSVYAASPGVGKGATFIVQLPTQD 663


>gi|306821071|ref|ZP_07454689.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550907|gb|EFM38880.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 598

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 167/393 (42%), Gaps = 24/393 (6%)

Query: 402 VIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V V S    G +   F  LT  ++ +  + ++        I H+  G+      G+I   
Sbjct: 224 VKVNSTDEIGQLGSTFNYLTKNLENMIKELSSEKSKLNAIIYHMQNGLVAIDNFGKIIHC 283

Query: 460 NPAFRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           N  F ++  + +N          ++ +T +   +       F+ II ++ +  KS   TL
Sbjct: 284 NANFVNIINSNQNVDALINKSYDDVISTFTDELS-------FSMIIRNYSNN-KSEDITL 335

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +        S +       +   + V   +   R L          +E++  FV +VS+
Sbjct: 336 NINDKYYTVSSAVFKEENGALAGIIVVFQDITESRRL----------EELRRDFVANVSH 385

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+T+I  +T+ L    +   ++  S ++  I+  S  + N++ D+L L+ +D    
Sbjct: 386 ELKTPITSIKSYTETLLDGAIDDKDTATS-FLTVINNESDRMNNIIKDLLQLSHMDYKKE 444

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
             + +   +N L  +    +       N +I           + D+ +  Q+   ++SNA
Sbjct: 445 SWDLALTDINALTKDCILKMTLYADMKNQKIVGEISNDKLPVIIDKSKFEQVIINLVSNA 504

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + +++   T+I+K   ++G    SV ++G  IPE     +F+RF            G GL
Sbjct: 505 IKYTNDNGTIIVKTFVNDGKCHISVTDDGIGIPEKDLPFIFDRFYRVDKGRSRSLGGTGL 564

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI ES I  HGG +S++S+    +T    IP
Sbjct: 565 GLSICESIIAEHGGTISVTSTFGEGSTFTVIIP 597


>gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 878

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 141/292 (48%), Gaps = 20/292 (6%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSF 572
           T+    + +++ +++ +  + T+     + ++ R  +     LT   +A  +A + +  F
Sbjct: 414 TIRSHMNFIIDVTLVLITMSFTLCYQYFIDEAHRETKTKNLQLTVAKDAAVEAYQARQEF 473

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+PL  +IG   LL+ S   SL  ++ Q  + + +   ILL LVNDILDL+ 
Sbjct: 474 LATMSHEIRTPLNGLIGMATLLRDSL--SLPPEEKQMAKSVKSCGDILLRLVNDILDLSK 531

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIF 691
           ++A  M +      + D+ +E+ Q +A +  E+N+R++  ++D        D  R+LQ+ 
Sbjct: 532 LEANQMVVENIGFRVKDMAHEICQVLAAQAKEHNLRLQYEVADNVPPVLFGDTGRILQVL 591

Query: 692 SKILSNAMDFSSKGST-VILKAARDNGD----------FIFSVKNNGSSIPEDMCKSVFN 740
             +  NA+ F+ +G   +I+    D+ +            F V++ G  +P +  + +F 
Sbjct: 592 MNLTGNAIKFTPEGVVKIIIDLIEDDAEKITFKSDEYNVCFRVQDTGIGVPPESHQKIFE 651

Query: 741 RFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            FV        +  G GLGL +    + L  G + + ++  G +T    +P 
Sbjct: 652 AFVQADPSDSRKYGGSGLGLYLCAKLVKLMRGEIGVYNNQHGGSTFWFILPL 703


>gi|295687501|ref|YP_003591194.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295429404|gb|ADG08576.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 910

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 114/753 (15%), Positives = 256/753 (33%), Gaps = 50/753 (6%)

Query: 67  DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK 126
           D+           + L  V   +     +             +        ++    + +
Sbjct: 22  DEAEAARWFFDNASDLFTVVSPEGRFARVNAAWTTLTGWSADELVGHPTIKFIHPDSHAE 81

Query: 127 LSKATEKLRKEGQSF-DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
           L  ++ +LR+ G +  ++    ++   + ++GR            + G+  +++      
Sbjct: 82  LIDSSRRLRETGSAINEVRVLCKDGRWVWLQGRSRLGPHG----EMIGLMHDISGEVEAR 137

Query: 186 KKLSNHISVFKVLFDSLDFLVW-HRDQAGDILWANISYKKN------TETEGIVFQKAIG 238
            +L       ++L ++    +W +      I W   +            T  + F +   
Sbjct: 138 AQLEAARRTHEMLAEAAGIGIWSYEPADARIDWTPDAVAALGLTPAEIATPELFFARIAP 197

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-----RVLNSFGEAGIAI 293
           E R    E   + + +       +        HG   +++       R        GI+ 
Sbjct: 198 EQRGKVAEAFSRAVQTGEGGSMEYRLRGH---HGRWLTFRSTYRAEPRPGGLHALKGISQ 254

Query: 294 DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +++      D+          ++ +   A+ ++D +  L+  +  F+E+++   A +   
Sbjct: 255 NITDVARSRDKAIWSERRARRLVEDAPFAVGVYDVDLRLRLVSPKFLEIFKATEADVIGR 314

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                L E    + +       +     I +  +      +     +   L         
Sbjct: 315 ----SLQELTNGSRRRFVAGVARALSGEIVTRREDRLLDAEG----DEHCLRWEARPWRD 366

Query: 410 G-----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G I   +++T       +     +     +     GV     +      +P F 
Sbjct: 367 VNGEIVGVITYMDDVTALAAARREARINARRLKVALGAARAGVYEIDHERASFWGSPEFH 426

Query: 465 SLWKTEENRLSPGTHIRNIAATCSR---YYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            +             I  +     R   Y   ++   L       +D      +G    +
Sbjct: 427 RMVGRRVGYEDVREAIWPMIHPEDRKKLYAAAAEWRRLGDQGAHEYDVRLCPSEGETRWI 486

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                          +     +++ +  RAE AL     A + A E K  F+ ++S+E+R
Sbjct: 487 RVFHEARRDSSGRPRKAFGLVLDIDEHKRAELALMAAERAAQAASEAKAQFLANMSHEIR 546

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  ++G   +LK       N+     +    A+  +L  L++D++D++ ++AG ++LN
Sbjct: 547 TPMNGVLGVLHVLKRELPSGENA---DLLGEALAAGQMLSTLLDDVIDISRIEAGRLELN 603

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +  +   +L   V + +A    E  + + +     LG    D  R+ Q    ++ NA+ F
Sbjct: 604 HEAVDPAELARGVVRLLAGPASEKGLSLDLDIAQNLGWIQTDATRVRQALFNLIGNAVKF 663

Query: 702 SSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + KGS V ++  R    D    +F V + G  +P    + +F RF        RR  G G
Sbjct: 664 TVKGS-VTVRVRRLGAADAQRLVFDVVDTGVGVPLAAQERLFERFQQADASTTRRFGGSG 722

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I  +   + GG +++ S     +T +  I
Sbjct: 723 LGLAISRNLARMLGGDITLRSKPGEGSTFSLTI 755



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 110/370 (29%), Gaps = 24/370 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGI 231
           I ++  + T +     +     +  FD+   L       G     N ++   T    + +
Sbjct: 6   IKADGVQATTRGSSSFDEAEAARWFFDNASDLFTVVSPEGRFARVNAAWTTLTGWSADEL 65

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-AG 290
           V    I         E+               E     + G     +    L   GE  G
Sbjct: 66  VGHPTIKFIHPDSHAELIDSSRRLRETGSAINEVRVLCKDGRWVWLQGRSRLGPHGEMIG 125

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTV--AIAIFD---QNRYLQFHNRSFVELWEIDLAF 345
           +  D+S E+    QL         L     I I+     +  + +   +   L  +  A 
Sbjct: 126 LMHDISGEVEARAQLEAARRTHEMLAEAAGIGIWSYEPADARIDWTPDAVAAL-GLTPAE 184

Query: 346 LATNPSNDELLEFL--RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           +A   + +     +      K+ E  +         S+      H   W      T    
Sbjct: 185 IA---TPELFFARIAPEQRGKVAEAFSRAVQTGEGGSMEYRLRGHHGRWL-----TFRST 236

Query: 404 VTSNPRGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
             + PR G +     + +N+T       K     +     ++     V V+  D R++L 
Sbjct: 237 YRAEPRPGGLHALKGISQNITDVARSRDKAIWSERRARRLVEDAPFAVGVYDVDLRLRLV 296

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           +P F  ++K  E  +  G  ++ +     R +       L   I+T  +D     +G   
Sbjct: 297 SPKFLEIFKATEADV-IGRSLQELTNGSRRRFVAGVARALSGEIVTRREDRLLDAEGDEH 355

Query: 520 LLSDSVLEYS 529
            L      + 
Sbjct: 356 CLRWEARPWR 365


>gi|254881618|ref|ZP_05254328.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254834411|gb|EET14720.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 616

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 171/399 (42%), Gaps = 41/399 (10%)

Query: 403 IVTSNPRGGTIWMFENLT----VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI-- 456
           I++       ++ + ++T    V++ LE K   L +V+         G+  +    R+  
Sbjct: 100 IISKYDEEHFLFQYRDITGRSVVRLKLEKKQKDLCEVEKAA----RIGLWAYDSSTRLFT 155

Query: 457 ------KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                    N   +     +E       H+ +    C          D    +      +
Sbjct: 156 YSGYTRIFCNDEEQKQISIDEYM--NYMHLDDKDRFCQWLEENLKEKDASNTVNYRLLID 213

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            K++   ++     V     +                  +AER+           +++K+
Sbjct: 214 GKTVNMRIKTYHKEVYMQRTVL-----EGYIQNTSEIVWKAERS-----------NQLKS 257

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+E+R+PL  I+GF+ ++  ++      ++ QY + +  ++  L  L+N+ILDL
Sbjct: 258 AFLANMSHEIRTPLNAILGFSRIIAETENA---EERLQYYDIVEKNNMRLQELINEILDL 314

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +++G+M+ NY+ + L  L  +VK + + +     + +             DR RL Q+
Sbjct: 315 SKIESGMMEFNYAPVSLYILCEDVKNTYSFRCQP-GVELVFEESDPSLVISTDRNRLFQV 373

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           FS ++ NA  F++KGS +         + +F V + GS I +D    +F+RF+   +  Q
Sbjct: 374 FSNLIGNATKFTAKGS-ISFGYKLKEKEIVFHVADTGSGISDDKIDKIFDRFIMANN--Q 430

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +G GLGLSI +  +   GG +++ S  E  TT    +P
Sbjct: 431 VQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|167032264|ref|YP_001667495.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166858752|gb|ABY97159.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 917

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 142/319 (44%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I  I    ++  +      L A      D+  + +    E L ++  E         +
Sbjct: 197 DPIERIKHAVNQLKDGHLEERLPAMGSHELDELARGINRMAETLQNAHEELQHSIDQATE 256

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +   +    E  L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S
Sbjct: 257 DVRQNLETIEIQNIE--LDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKS 314

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           ++     +Q  Y+  I  S+  LL ++N+ILD + ++AG + L+     L DL+ +    
Sbjct: 315 EM---TPRQLDYLSTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTI 371

Query: 658 IATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---- 712
           +A   H   +  + +I      S + D  RL QI + ++SNA+ F+ +G T++++A    
Sbjct: 372 LAPAAHAKQLELLSLIYRDTPSSLIGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLDD 430

Query: 713 -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
              D+     SV++ G  +     +++F  F    +    Q  G GLGL I +  I   G
Sbjct: 431 EHEDHAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMG 490

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S+    +     +
Sbjct: 491 GEIGVDSTPGEGSQFWISL 509


>gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2]
          Length = 918

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q+ YVE I++
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDRGQAAYVETIAS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D 
Sbjct: 452 SGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDR 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSI 730
           G       D  RL Q+   +LSNA+ F+++G   V ++   D G     ++SV ++G  I
Sbjct: 512 GVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +
Sbjct: 572 SAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTQFSVDL 631

Query: 789 PS 790
           P 
Sbjct: 632 PL 633


>gi|320104791|ref|YP_004180382.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319752073|gb|ADV63833.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 973

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/509 (16%), Positives = 176/509 (34%), Gaps = 27/509 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +  +     +IL     AI   D    +   N S   ++    + +            
Sbjct: 108 RALEVERVKVNQILERSAEAIVSLDSAGRIVSINPSAARMFGYSASEVVGESFLKLFTFS 167

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
            ++A  +   L   T+++    + K   T      +     + V               +
Sbjct: 168 GQAAQDIKSSLKAATFQQVPRGLKKDQTTFPIELSI---TEVMVEGRRL----VTLFVRD 220

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           LT   + + +    V      +D  +   +      G +++ N     +   + + +   
Sbjct: 221 LTEVQNWKRRQEEAVNQLRSVLDAATRFSIVATDAHGVVEVFNTGAERMLGYQASEVIGR 280

Query: 478 THIRNI----------AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +  +              ++     D  ++    +     + ++     +     ++ 
Sbjct: 281 MRLDQLHLPQELREEAQRLETKLGQPIDPIEVLFEPVRRLGFQERTWTYVRKDGGTLLVN 340

Query: 528 YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
               P  ++       +    +VT+ VR +  +    +    A+  K+ F+  +S+E+R+
Sbjct: 341 LVTTPRRDSAGRIVGYVGIADDVTEQVRYQEEIRRARDRADAANRAKSEFLASMSHEIRT 400

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+T+I+G  D+L    L     + ++    I A+   LL ++NDILDLA ++AG + +  
Sbjct: 401 PMTSILGHADILNLPDLTP--QRLAEARGAIQAAGRHLLRIINDILDLAKIEAGKLPMEI 458

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
                  L  EV   +        + + + + G L      D  RL Q+   ++ NA+ F
Sbjct: 459 LPCDPWTLAREVVAGLRINATRRELALTLEAAGPLPKQIQTDPNRLRQVLYNLVGNAIKF 518

Query: 702 SSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           + KG   +I+          F V + G  +  +    +F  F          G GLGL I
Sbjct: 519 TEKGGVRLIVSFDPSACRLSFDVIDTGVGMTPEQVGKLFTPFYQAERTHNAGGTGLGLVI 578

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +      GG + + S     +  +  IP
Sbjct: 579 SKRLAERLGGTIKVQSQRGRGSVFSVLIP 607


>gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1201

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 145/314 (46%), Gaps = 14/314 (4%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R  N  +     A  + +   E ++L   LE+ +   L+ S   L   Q  L   N    
Sbjct: 445 RLQNFLEETQAQAEELQAQHTEMENLNAELEMQAQK-LQASEEELRVQQEELQQTNTELE 503

Query: 549 VRAERALTEKNEALRKADEI------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            R      + +E  +KADE+      K+ F+ ++S+ELR+PL +I+  + LL  +   +L
Sbjct: 504 ERGLLLEEKNDEIQKKADELELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENNEATL 563

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q +Y   I +S   LL L+++ILDL+ ++AG MKL+Y  + + ++ +E++       
Sbjct: 564 TPDQVEYARVIQSSGNGLLGLIDEILDLSKIEAGQMKLDYQDMSIAEITDELQSLFGLVA 623

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGD 718
            E  +   +     + + +  DR RL QI   +LSNA+ F+S G  V L+  R       
Sbjct: 624 KEKGLDFAITVKPDVPTVIETDRMRLGQILKNLLSNAIKFTSSG-QVSLRIERSTSAAST 682

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F VK+ G  IP +    VF  F       +R   G GLGLSI      L GG +++SS
Sbjct: 683 LCFVVKDTGIGIPPEKQPLVFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEITLSS 742

Query: 777 SDEGVTTINCRIPS 790
                +     +P 
Sbjct: 743 EVNVGSEFTILLPL 756


>gi|298251062|ref|ZP_06974866.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297549066|gb|EFH82933.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1095

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/643 (18%), Positives = 238/643 (37%), Gaps = 63/643 (9%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            G  +++ E     ++L      F+VL +++  LVW     G   + N  +   T      
Sbjct: 489  GTCTDIDEQKRTEQRLKESEERFQVLAETVPQLVWTTRPDGQFEYTNQHWCDYTGLTLEQ 548

Query: 233  FQKAIGESRKLFKEEIKKRMISS---SALEKNFCETVSTLEH---GNNKSY--KIVRVLN 284
             Q            + ++ + +    +    +  E    L+H   G  + +  + + V +
Sbjct: 549  TQSDQWAQLPFIHPDDQEDIRARWQHALETGDMYEHEGLLKHAHTGEYRWFLTRAMPVRD 608

Query: 285  SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
              G+     G   D+  +     +L     ++  +   + I   +   ++ N+ + E   
Sbjct: 609  EAGQILKWCGTCTDIHDKKRAEAELRV---LIDAIPQHVWILGPDGLSEYGNQRWCEYTG 665

Query: 341  I-------DLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            +       D    A +P + +  L   R    + E          I    K  +T    W
Sbjct: 666  MTYQQYQGDGWHQAIHPDDRQHTLTLWRQTCAMGEPF-------EIEYRLKHGQTGTYRW 718

Query: 393  HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
             L  G+ L V   +           ++  Q  +E       +     ++    G+ +   
Sbjct: 719  FL--GRALPVRDETGQILKWFGTCTDIEEQKRIEAALRESQERTSVLMNSSIIGINI--A 774

Query: 453  DG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN---ESDGWDLFAAIITSFD 508
            +G +I  +N  F  +       L  G  I  +  T   Y +   E+        ++T ++
Sbjct: 775  EGEQIVDANDTFLYMTGYTREDLRTGK-INWMQMTPPEYLDRTVEAHQELAAKRLMTPYE 833

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             E     G+   +    +     PL N                  A    N A ++ ++ 
Sbjct: 834  KEYVCKDGSRLPVLVGSIGLEHNPLQNI-----------------AFVLDNSARQELEQR 876

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K++F+   S+ELR+PLT +   T LL    +      Q+  +  +      +  LV D+L
Sbjct: 877  KDAFISMASHELRNPLTALKMQTSLLHRQLVKQ--GLQAPALSSMQTQINKITRLVEDLL 934

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            D++ + AG ++     + L+ LL E+  ++      + I +       L   + DR RL 
Sbjct: 935  DVSKIQAGRLEYQQEIVDLDALLREIADTMLHTHPSHTILLHGTVGTSL---MGDRDRLG 991

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            Q+F+ +LSNA+ +S    TV ++ +         V+++G  IP +    +F+RF      
Sbjct: 992  QVFTNLLSNAIKYSPGAETVEMELSASEEAVTILVRDHGLGIPREQRDKIFDRFYRVTDP 1051

Query: 749  GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             Q+   G+G+GL IV   +  HGG + + S     +T    +P
Sbjct: 1052 KQKAIPGLGMGLYIVAEIVKHHGGTIMVESEMGKGSTFQVTLP 1094



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/493 (12%), Positives = 141/493 (28%), Gaps = 75/493 (15%)

Query: 108 TDTDLLSFENWLKFHHYI--KLSKATEKLRKEGQSFDLVAETQNDCA-IKIEGRVSGSCA 164
           +    L    W    H +   L  A   +R+  +  ++   +      + ++   +    
Sbjct: 52  SPEAFLGHSFWRGAPHLVSTALYHAMRTVRQTREPTEVEYISPVTRTRLHVQLAPTAGGL 111

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            L+         E   +      L  H++    +  +L   V      G +L  N +   
Sbjct: 112 LLQFHE----KQEPIRSQKTFF-LEEHLTA--DVLVNLYVGVGVLTPEGILLDINEA--- 161

Query: 225 NTETEGIVFQKAIGESRKLFK---------EEIKKRMISSSALEKNFCETVSTLEHGNNK 275
                 I  ++ IG+               +++++ +  +S  E    ETV     G + 
Sbjct: 162 PLADTQIRREEVIGQPFTETPWWSFYPASQQQLREAITRASKGETVRFETVIHPREGMDL 221

Query: 276 SYKIVRVLNS------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
             +     +            +  D++       +L     ++  +   +     + Y+ 
Sbjct: 222 HLEATITPHRDVGHRVEYLVYVGTDITARKRAEAELHA---LIDAIPQLVWAGRPDGYVD 278

Query: 330 FHNRSFVELWEID------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
           F+N+ + +   +         ++      D              Q   +TW +       
Sbjct: 279 FYNQRWRDYTGLSTEEAQGEGWMQCTHPEDR-------------QRVLETW-QRAVQTGS 324

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLETKYNTLVKVQ 436
             E  +   H   GQ    ++ + P    RG     I    ++  Q  +E +     +  
Sbjct: 325 PYEAEQRLRHCTTGQYRWFLMQATPYRDARGTILKYIGTCTDIDEQKQVEERIKASEENW 384

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               + + + V    PDG     N  FR        +L             S++ +  D 
Sbjct: 385 RVLAETVPQLVWTTRPDGLSDYFNQRFRDYTHATWEQLYGYG--------WSQFLHPEDY 436

Query: 497 WDLFAAIITSFDD----ERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTD 547
               A    SF      E        +           +P+ +      +   T  ++ +
Sbjct: 437 ERTLAERAHSFRRGTPYEVAYRFREGQTGCYRWFLARAMPVRDETGQILKWFGTCTDIDE 496

Query: 548 SVRAERALTEKNE 560
             R E+ L E  E
Sbjct: 497 QKRTEQRLKESEE 509



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 86/267 (32%), Gaps = 26/267 (9%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               IL  L  A  + D    + + N+    L          +        F R A  L 
Sbjct: 17  TLLTILETLPDAFFVVDDVDTIVYANQCAQALTRASPEAFLGHS-------FWRGAPHLV 69

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSNPRGGTIWMFENLTVQVDL 425
               +      + +V ++ E  +  +  P  +T LHV +     GG +  F      +  
Sbjct: 70  STALYHA----MRTVRQTREPTEVEYISPVTRTRLHVQLAPTA-GGLLLQFHEKQEPIRS 124

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN-IA 484
           +  +     +  + + +L  GV V  P+G +   N A        + ++     I     
Sbjct: 125 QKTFFLEEHLTADVLVNLYVGVGVLTPEGILLDINEA-----PLADTQIRREEVIGQPFT 179

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQT---- 538
            T    +  +    L  AI  +   E    +  +      D  LE +I P  +       
Sbjct: 180 ETPWWSFYPASQQQLREAITRASKGETVRFETVIHPREGMDLHLEATITPHRDVGHRVEY 239

Query: 539 -MLTFVNVTDSVRAERALTEKNEALRK 564
            +    ++T   RAE  L    +A+ +
Sbjct: 240 LVYVGTDITARKRAEAELHALIDAIPQ 266


>gi|167766413|ref|ZP_02438466.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1]
 gi|167711822|gb|EDS22401.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1]
          Length = 804

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 147/300 (49%), Gaps = 11/300 (3%)

Query: 499 LFAAIITSFDDERK--SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
             A I+ ++ + +         E++ D ++ +    +  A  M     +    + +  L 
Sbjct: 139 YIATIMIAYQNPQMVVWFSSEKEVVMDLLIGFCASSISVAAVMYLHFRMY--NKQQEILE 196

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           E     + A++ K++F+ ++ +E+R+P+  ++G  +++      S + +  QY + I  S
Sbjct: 197 EARIEAQSANKAKSAFLANMGHEIRTPINVMLGMNEMILRE---SESEEIRQYAKSIERS 253

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L++L+N+ILD++ +++G M++      L  LL+EV      +  + ++++ +I D  
Sbjct: 254 GGYLISLINNILDISRIESGKMEIEEGKYELRQLLDEVMLIAEKQAEQKSLKMNLIFDKT 313

Query: 677 LGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDM 734
           L ++ + D   + QI   +++NA+ ++ +G   + +    +    IF VK+ G  I E+ 
Sbjct: 314 LPAYLIGDVIHIKQILLNLINNAVKYTKEGQIDIKVSKNEEETKLIFEVKDTGIGIKEEN 373

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +F+ F+    +  ++  G GLGL+I +  +   GG + + S     ++   ++P K+
Sbjct: 374 LPVLFDAFMRVDSKKNKKIKGTGLGLAIAKQLVEQMGGMIWVESVYGKGSSFFVQLPMKK 433


>gi|54302218|ref|YP_132211.1| two-component sensor [Photobacterium profundum SS9]
 gi|46915639|emb|CAG22411.1| hypothetical two-component sensor [Photobacterium profundum SS9]
          Length = 680

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ F+ ++S+E+R+P+  IIG + LL+      +   Q +Y++ ++ SS  LL+L+N
Sbjct: 74  NRKKSEFLANMSHEIRTPMNGIIGLSSLLQEM---DMPKDQKEYIQMLNISSLSLLDLIN 130

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADR 684
           DILD + ++AG ++L ++++ L +L  EV+     K  E +I  +   D +     + D 
Sbjct: 131 DILDFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGDA 190

Query: 685 QRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            +L Q+ + ++SNA+ F+  G     T +           F V ++G  +  D  ++VF+
Sbjct: 191 TQLRQVLNNLVSNAIKFTHTGYVHLHTQLETDTDTETTIRFEVIDSGIGVSADKHEAVFD 250

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F        R   G GLGLSI    ++L GG + ISS  +  +T    I
Sbjct: 251 KFQQADGSTTRKYGGTGLGLSICRQIVHLMGGEIKISSEVDKGSTFYFTI 300


>gi|255534205|ref|YP_003094576.1| two-component system sensor histidine kinase/met
           hyl-esterase/transferase hybrid [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340401|gb|ACU06514.1| two-component system sensor histidine kinase/met
           hyl-esterase/transferase hybrid [Flavobacteriaceae
           bacterium 3519-10]
          Length = 747

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/521 (17%), Positives = 193/521 (37%), Gaps = 46/521 (8%)

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVA--IAIFDQN-RYLQFHN--RSFVELWEID 342
             GI  D+++      +   ++  L+    A  + +FD N   L+ +N    F+E++  D
Sbjct: 248 MLGILQDITERKKNEIRQHQSHHQLNTAMEATKLGLFDMNPETLEKYNFSPRFLEIFGYD 307

Query: 343 LA------FLATNPSNDELLE-FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            +       +     + + ++   ++  K  E  +     + +             W   
Sbjct: 308 PSSETIDTHVFEKHIHKDFIDVRAQALQKAQETGDLHYQTKIVLR------DGSVKWIEL 361

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            G+ L     SN          ++T   + E K +   K      D + + V    PDGR
Sbjct: 362 YGRLLRESAASNA--YISGTVRDITDLKNYEQKLSASEKKYRFLADVMPQIVWTGEPDGR 419

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           +   N +  +        L  G  +  +     +                  ++  K   
Sbjct: 420 LTYFNQSTLNYSGKSYKELLEGDGLNQMVHPEEQ------------------EETGKRWA 461

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE-----KNEALRKADEIKN 570
            ++        E+      N           +   A             + +++ ++ K+
Sbjct: 462 ASVRTKKPFFFEHRFRDSNNEYRWFMSKAFPEMDDAGNVTKWVGTSTDIDDMKRQEQQKD 521

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F++  S+EL++P+T I G+  LLK ++  S +      +  I      L  L+ D+LD+
Sbjct: 522 DFIKMASHELKTPVTTIKGYVQLLKRTRKDSDDKFLVNSLNTIENQVNNLSVLIGDLLDI 581

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + ++ G + LN     L +L+ E  + I      + I  ++     +    AD++RL Q+
Sbjct: 582 SRMENGYLLLNKHKFSLVELVTESIEDIKASEQSHEINFEMKHFADI-EVFADKERLKQV 640

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHR 748
            + +L+NA+ +S K ++V ++   ++G  I SV++ G  +       +F RF        
Sbjct: 641 LTNLLTNAIKYSPKANSVNVELWVEDGRGIVSVEDFGIGMEASELGKIFERFYRVSGDDE 700

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               G G+GL IV+  I    G + + S     +     +P
Sbjct: 701 KTFPGFGIGLYIVKDIIQRLDGKIWVESEKNQGSKFYFSLP 741



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 72/201 (35%), Gaps = 22/201 (10%)

Query: 128 SKATEKLRKEGQ---SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
           ++A +K ++ G       +V    +   I++ GR+    A      + G   ++ +    
Sbjct: 331 AQALQKAQETGDLHYQTKIVLRDGSVKWIELYGRLLRESA-ASNAYISGTVRDITDLKNY 389

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI--------SYKKNTETEGIVFQKA 236
            +KLS     ++ L D +  +VW  +  G + + N         SYK+  E +G+   + 
Sbjct: 390 EQKLSASEKKYRFLADVMPQIVWTGEPDGRLTYFNQSTLNYSGKSYKELLEGDGLN--QM 447

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY------KIVRVLNSFGEAG 290
           +    +  +E  K+   S    +  F E      +   + +      ++    N     G
Sbjct: 448 VHPEEQ--EETGKRWAASVRTKKPFFFEHRFRDSNNEYRWFMSKAFPEMDDAGNVTKWVG 505

Query: 291 IAIDVSKEITVNDQLTHTYEI 311
            + D+        Q     ++
Sbjct: 506 TSTDIDDMKRQEQQKDDFIKM 526


>gi|283853674|ref|ZP_06370906.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570945|gb|EFC18973.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1071

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 163/383 (42%), Gaps = 28/383 (7%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +    T +  + G+A+  P GR    N     +       +  G   + I        
Sbjct: 543 SERRFQATFELAAVGIALVSPQGRWLRVNRKLCDIVGYAAEEMV-GMTFQKITHPEDLES 601

Query: 492 NESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVL---------EYSIIPLPN----- 535
           + +    +   +  +++ E++ +   GT+  ++ +V          +Y I  + +     
Sbjct: 602 DMALVQQVLGGVTNTYNREKRYIRKDGTVVWINLTVALVRDAAGAPDYFISVVEDIDRRK 661

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A      ++  D  RA R  T        A+  K++F+ ++S+E+R+PL  ++G   LLK
Sbjct: 662 AIEEQLRLSKDDLERAARQATHLARRAEAANLAKSAFLANMSHEIRTPLNGLLGMMQLLK 721

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T+    L+ +Q +Y +    S   L  L+ DILDL+ ++A  M L+ +   L D+   + 
Sbjct: 722 TTV---LDEEQLEYADMAIRSGGRLTRLLGDILDLSRIEAERMALSLAPFRLADVFAAIT 778

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILK 711
           ++ A  + E  + +   +   +    V D  R+ QI   +  NAM F+  GS    V   
Sbjct: 779 ETFAPLVREKGLPLACRAAPDVPGVLVGDEMRVRQILFNLTGNAMKFTEAGSVAVEVSSL 838

Query: 712 AARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           A+ D G    +F+V + G  IP+D   +V   F          ++G GLGL+I      L
Sbjct: 839 ASPDPGQARLLFTVADTGVGIPDDKIDTVGEPFTQADSSYTRDQQGAGLGLTISRQLTEL 898

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
            GG ++I S     TT+   +P 
Sbjct: 899 MGGTLTIESEPGQGTTVYLMLPL 921



 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 6/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   +T   E  R+ D +K  F  +VS+ELR+PLT I+G    L        +      +
Sbjct: 132 ANEEITRLYEKTRELDALKTRFFANVSHELRTPLTLILGP---LARRLEACADDAARADL 188

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  ++ +L   V+D+LD+A +DAG M+  Y+   +  L   +     +   E  IR  
Sbjct: 189 RVMERNALLLHRHVSDLLDVAKLDAGRMETRYARADVARLARFMGSCFESLAREKRIRFT 248

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           + +  +L + V D +++ +I   +LSNA  F+  G  V ++   D      +V +NG  +
Sbjct: 249 IAAPERLSAAV-DVEKVRRILQNLLSNAFKFTPDGGAVDVRLEEDGDWVAMTVADNGPGV 307

Query: 731 PEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P  + ++VF RF         +  G GLGL+I   F  LHGG + + +S  G  +    +
Sbjct: 308 PPALRQAVFERFRQLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGASFTVTL 367

Query: 789 PSK 791
           P K
Sbjct: 368 PRK 370


>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1493

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 148/345 (42%), Gaps = 30/345 (8%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R   S   F          L     ++++ A  + Y +E +G  +           R+ 
Sbjct: 621 DRAIASTDVFSEPLLESSIPLCRRMALKSMLAVRTSYQDEPNGIIMLHQ----CQQMREW 676

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSF 572
            +  +E L D   +  I  +  A+ +   V    ++ A+ +AL E   A   A   K+ F
Sbjct: 677 NRDEIEFLEDVASQVGIT-IAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEF 735

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  +IG T LL   +   L  +Q  +VE I  S   LL ++NDILD + 
Sbjct: 736 LATMSHEIRTPMNAVIGMTGLLLDME---LTPEQRDFVETIRTSGDALLTIINDILDFSK 792

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
           +++G ++L      L + L E  + ++ +  E  + +  I D     + + D  RL Q+ 
Sbjct: 793 IESGKLELEKQPFKLRNCLEECLELLSGRADEKGLELAYIIDPSTPKTILGDVTRLRQVL 852

Query: 692 SKILSNAMDFSSKGSTVI-LKAARDNGD-----------------FIFSVKNNGSSIPED 733
             ++SNA+ F+S+G  ++ +KA   +                     F V++ G  IP D
Sbjct: 853 VNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKSDDSDFTESHYVLQFEVRDTGIGIPPD 912

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               +F  F        R   G GLGL+I +    L  G + ++S
Sbjct: 913 RIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQLMNGKMWVAS 957


>gi|163753494|ref|ZP_02160618.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
 gi|161327226|gb|EDP98551.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
          Length = 510

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/349 (23%), Positives = 166/349 (47%), Gaps = 20/349 (5%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
                  G +  S+    SL K ++  +     +       S Y++  +  D+    +  
Sbjct: 16  FITIDESGNVLESDNVLFSLKKGDDISV-----VSPFFEGLSSYFDVQEDNDIKFTCVHL 70

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEA 561
              ++K     +E  + +  + ++I + +      +       R E     + L  KN+ 
Sbjct: 71  ESSDQKEYTCDIEFKTFAKNQPTLIIIHDFSDHYKYYQEVAQSRNESVINSQILELKNKY 130

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++ ++ KN+F+ + S+ELR+PLT +  F  +L+ +   S+ ++Q  YVE I +S+  L 
Sbjct: 131 LKEKEDFKNTFIANFSHELRNPLTGVTAFCSVLEKT---SMTTEQQDYVEVIKSSADHLK 187

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           N++ DIL+++ ++ G + +       ++L+  ++ + + K  + NI  +V  D K+  ++
Sbjct: 188 NMIGDILEMSKIEVGKLTIEEELFNFHELVEMLEFTYSVKAKQKNIEFEVDFDEKIPKYI 247

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FSVKNNGSSIPEDMC 735
            +D+ R+ QIF  ++ NA  F+S G  V L    +           SVK+ G  IP +  
Sbjct: 248 ESDKTRIKQIFENLIENAFKFTSTG-KVTLSIHENQRRARKVNLNISVKDTGIGIPPEKL 306

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
             +FN F    +  +  G GLGLSIV+  ++L  G +++ S ++  +T 
Sbjct: 307 DIIFNSFTQLNNSQKYSGTGLGLSIVKGLVDLMDGKITVESEEKVGSTF 355


>gi|313499882|gb|ADR61248.1| Histidine kinase [Pseudomonas putida BIRD-1]
          Length = 935

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 113/605 (18%), Positives = 216/605 (35%), Gaps = 79/605 (13%)

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           ++L+ + + +           +A   S  L ++     + +++  E    +       G+
Sbjct: 132 NLLYVDTAAQAPMRWLYNADAQASLPSPALLEQLRASELRATAPRELWLADQ---GAQGS 188

Query: 274 NKS--YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA-IAIFDQNRYLQF 330
                 ++       G  G+ ID                 L + +     +F+ +  L F
Sbjct: 189 RLFIFLRLDARDPGSGWLGLEIDSQAVSPS----------LEDASAGKFMMFNADGMLVF 238

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL---------NWKTWKENIFSV 381
            N          L     +P  +    F      LPE L         +W+       S 
Sbjct: 239 TNTP-----GPTLDRSLRHPVGNNFFGFA-GQGFLPEYLVISKPLMSSDWQLVYAIDLSA 292

Query: 382 YKSSETHKDT----WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
             +    +      + + +   + V++    +       E +   V+ E           
Sbjct: 293 ILAGLWQQLLGALLFCVLSITLIRVLIQRFDQRLFTPTVERIRALVESEI-------FSR 345

Query: 438 ETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           + I+     + V    DG++ L N   +                           + + G
Sbjct: 346 DVIETAPVALCVLRRSDGQVVLENHLAQQWLGQ----------------------DPARG 383

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAER 553
                 I  +F+          E      L  S  P         +  F +++   + E 
Sbjct: 384 ARSAQWIEQAFERHEGQCSDYFESAEGRHLYLSCSPTRYKGEPVLLCAFSDISARKQIEA 443

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +   A   A+E K  F+  +S+E+R+PL  ++G  +LL  +    L+++Q  Y+  I
Sbjct: 444 ALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTV---LDAQQRDYLRAI 500

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS+ LL L+ D+LD++ ++AG + L  S     DL+ EV Q  +       +++    
Sbjct: 501 EGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKGLQLYSCL 560

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGD--FIFSVKNNG 727
           D +L    + D  R+ QI + +LSNA+ F+  G  V+L+A    RD      ++ V + G
Sbjct: 561 DPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCG-RVVLRARLLNRDGERSCLLWQVSDTG 619

Query: 728 SSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I E     +F+ F     H     G GLGL I +    L  G + + S     ++ + 
Sbjct: 620 KGIAEQDQPFIFDPFYQTEGHSQVIPGTGLGLPICQRLTQLMNGQLRLVSELGLGSSFSL 679

Query: 787 RIPSK 791
            +P +
Sbjct: 680 TLPLE 684


>gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980]
 gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1464

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/587 (16%), Positives = 204/587 (34%), Gaps = 76/587 (12%)

Query: 264 ETVSTLEHGNNKSY----KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
           E+V+       + +     +  V N         D +  +  ++       I  ++   I
Sbjct: 388 ESVTIPNKAARRLFAREADMSNVKNVGKWHCYNHDFTVALDPSEYPISVLMICDSMPQLI 447

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENI 378
                +    + ++ + +   + +             E L    K P    +    K+  
Sbjct: 448 WTTTPDGMHDWFSQRWYDYTGLTME------------ESLGEGWKSPFHPDDLALTKKRW 495

Query: 379 FSVYKSSETHKDTWHLP--NGQTLHVIVT----SNPRGGTI----WMFENLTVQVDLETK 428
               ++ E +   +     +G+   ++       N   G I        ++   V    +
Sbjct: 496 QHCLETGEPYTTEYRCRKHDGEWRWMLGRAICMRNKDTGKIEKWYGTCTDIHEAVMSRFE 555

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--------------WKTEENRL 474
              L +     I H    +       +I L   AF                     +   
Sbjct: 556 AKRLRQQLLSVITHAQVTLFSVDRHRKINLLEGAFIWDLESDVGSSDESLAGSGKAKGSD 615

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-- 532
             G ++ N+ +  S +    D        I      +         + +       +P  
Sbjct: 616 YIGKNVYNVFSHSSNHRQSHDVIPASLQPIEDILTGKVMEDMQEHTIDNRWYRTKFVPVL 675

Query: 533 ---------------------LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
                                +   +      ++    R    L     A ++A  +K+ 
Sbjct: 676 GKKDGGGHVNEAFIDGVIGLSMDITEIKDRENDLQMQERENTRLLANEAAAKEASRLKSQ 735

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  +IG  +LL      +L+ +Q +  E I  S+  LL ++NDILD +
Sbjct: 736 FLANMSHEIRTPIAGVIGMAELLTDM---NLDEEQQECAENIQRSANALLTVINDILDFS 792

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD---GKLGSFVADRQRLL 688
            V++G + +      L+ ++ +V + +       N+           K    + D  R+ 
Sbjct: 793 KVESGRLDIEEVQFSLSVVVRDVSKMLGFAAERKNLMFDSDITVGVDKDLIVMGDPGRVR 852

Query: 689 QIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QI + +L+N++ F+S+G    S +  +   D  +  F V++ G  I E++ K +F  F  
Sbjct: 853 QIITNLLTNSIKFTSEGRVKFSVIKEREDADTIEVKFVVEDTGIGIEEEVRKRLFKPFSQ 912

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 RR  G GLGL+I ++ ++L  G +++ SS    TT    IP
Sbjct: 913 ADSSTARRFGGTGLGLTISKNLVDLMHGRITLESSLGQGTTATFWIP 959


>gi|149909590|ref|ZP_01898243.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
 gi|149807294|gb|EDM67247.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
          Length = 903

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 16/296 (5%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              IIT+     +    +L++  D   E+S      A   +    + +    E+ + +  
Sbjct: 319 LKEIITTLTRIEEKHDYSLKIKIDGNDEFS------AFAKMLNKLIEERHINEKQIIQAK 372

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+  +A+  K+SF+ ++S+E+R+PL  +IG +++L  +K   L   Q  ++  I  SS  
Sbjct: 373 ESAEQANVAKSSFLANMSHEIRTPLNGVIGMSNILSNTK---LTPSQQDHLAIIENSSQT 429

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LL L+NDILD + +++G + +      L +++ +    I       N+   V    +L  
Sbjct: 430 LLILINDILDFSKIESGHLAITNHRCDLREVIYDTVAIITPSAAAKNLDFSVNIAPELPN 489

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDM 734
            F+ D  RL Q+   +LSNA+ F+  G   + L +        +  FSV + G+ I ED 
Sbjct: 490 EFLLDEHRLRQVLMNLLSNAVKFTDSGQVSLTLSSKVIENSRSELYFSVADTGTGIEEDK 549

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F        R   G GLGL+I    + L GG + + S+    +     I
Sbjct: 550 QQKIFEPFTQEDGSITRQFGGTGLGLAISTQLVELMGGEIGVDSTKGQGSNFYFTI 605


>gi|16124282|ref|NP_418846.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221232965|ref|YP_002515401.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13421116|gb|AAK22014.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220962137|gb|ACL93493.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 900

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 116/710 (16%), Positives = 260/710 (36%), Gaps = 64/710 (9%)

Query: 117 NWLKFHHYIKLSKATEKLRKEGQSF-DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
            ++      +L     +LR+ G +  +L    ++   I ++GR            + G+ 
Sbjct: 66  KFVHPDSQAELVDTGRRLRQTGSAINELKIRCKDGRWIWLQGRSRLGPHG----EMVGVM 121

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANISYKKN--TETEGIV 232
            +++       +L        +L +     VW  +     I WA  +      +  +   
Sbjct: 122 HDISAEVEARLELEAARRTQALLAEKAGIGVWSYEPETQRIDWAPDALALMGVSPEDIAT 181

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-------VRVLNS 285
            +  +    +  + E++   + ++   +        L   + + + +        R  + 
Sbjct: 182 PELFLARLPENHRAEVQAAFVHAARTGEGGTLE-YRLRANDGRWFTLRATYRTEARPGSG 240

Query: 286 FGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           F   G++ +++      D+          ++ +   A+A++D +  L+  +  F+E++  
Sbjct: 241 FALKGVSQNITDVARSRDKAIWSERRARRLIEDAPFAVAVYDVDMRLRMVSPRFLEIFRS 300

Query: 342 DLAFLATNP-------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
             A +           +    +  +  A         +    +   V ++       W  
Sbjct: 301 TEAQVIGKTLTELTNGTRRRFVNRVARALSGEVVTRREDRLYDAEGVERAFRWEARPWRD 360

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
             G+ +          G I   + +T   +   +     +     +     GV     + 
Sbjct: 361 VAGEIV----------GVITYMDEITALTEARREARNNARRLKVALGAARAGVYEIDHEK 410

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKS 513
           +    +P F  +              +++        +  D   L+    T   +  R  
Sbjct: 411 QAFWGSPEFHRMMG-------RRIEYQDVREGIWPMVHPEDLTQLYETAATWRREGRRTP 463

Query: 514 LQGTLELLS----DSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRK 564
            +  + LLS                + Q      +   +++ +  +AE AL E   A + 
Sbjct: 464 QEHEVRLLSPGGEARWARVFHEVRRDGQGKALKAVGLILDIDEKKKAELALIEAERAAQA 523

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+E K  F+ ++S+E+R+P+  ++G   +LK       ++     +    A+  +L  L+
Sbjct: 524 ANEAKAQFLANMSHEIRTPMNGVLGVMHVLKRELPPGDSA---SLLNEALAAGQMLSTLL 580

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +D++D++ ++AG + LN+  +   DL+  V + +AT+     +R+++     LG    D 
Sbjct: 581 DDVIDISRIEAGRLDLNHEPVDPRDLVRGVARLLATQAAHKGLRLELDLPDDLGWIETDP 640

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFN 740
            R+ Q    ++ NA+ F+ KGS V ++A R         +F + + G  +P +  K +F 
Sbjct: 641 TRVRQALFNLIGNAVKFTLKGS-VTVRAQRRITDAGPYLVFDIIDTGVGVPLEAQKRLFE 699

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           RF        RR  G GLGL+I      + GG VS  S     +T +  I
Sbjct: 700 RFQQADAGTTRRFGGSGLGLAITRKLARMLGGEVSFRSVPGEGSTFSLTI 749



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 98/336 (29%), Gaps = 12/336 (3%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVFQKAIGESRKLFKEE 247
                 +  FD+   L       G  +  N ++   T    + +V Q  I       + E
Sbjct: 16  GEGEAARWFFDNASDLFTVISAEGRFISVNDAWSHLTGWARDELVGQPTIKFVHPDSQAE 75

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLT 306
           +               E     + G     +    L   GE  G+  D+S E+    +L 
Sbjct: 76  LVDTGRRLRQTGSAINELKIRCKDGRWIWLQGRSRLGPHGEMVGVMHDISAEVEARLELE 135

Query: 307 HTYEILHNLT----VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                   L     + +  ++            + L  +    +A   + +  L  L   
Sbjct: 136 AARRTQALLAEKAGIGVWSYEPETQRIDWAPDALALMGVSPEDIA---TPELFLARLPEN 192

Query: 363 NKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           ++   Q  +    +       +      D        T               + +N+T 
Sbjct: 193 HRAEVQAAFVHAARTGEGGTLEYRLRANDGRWFTLRATYRTEARPGSGFALKGVSQNITD 252

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
                 K     +     I+     VAV+  D R+++ +P F  ++++ E ++  G  + 
Sbjct: 253 VARSRDKAIWSERRARRLIEDAPFAVAVYDVDMRLRMVSPRFLEIFRSTEAQV-IGKTLT 311

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            +     R +       L   ++T  +D     +G 
Sbjct: 312 ELTNGTRRRFVNRVARALSGEVVTRREDRLYDAEGV 347


>gi|312879107|ref|ZP_07738907.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782398|gb|EFQ22796.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 540

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 157/379 (41%), Gaps = 14/379 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ ++  E       +      +H    + +    GRI+  NP F+ L       +   T
Sbjct: 1   MSSRLPSEKSRRF--RSLFLAAEHNPSAIVITDAAGRIEYVNPRFQELTGYTAEDVLGKT 58

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +    R + E     L    +   +   +   G L   S ++          A  
Sbjct: 59  PRVLQSGLHDRGFYEELWGTLARGEVWKGEFCNRRKTGELYWESAAIAPVRDRKGVVANY 118

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    +VT+S      L    E    A+E K+ F+  +S+E+R+P+  I+G  +LL+ + 
Sbjct: 119 VAVKEDVTESKVLREELLRAKEDAETANEAKSVFLASMSHEIRTPMNGILGMLELLRQT- 177

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q +Y+  +  S+  L++ +N +L+ + + A   +L      L   +  + +  
Sbjct: 178 --DLDPQQEEYLRIVRESAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELF 235

Query: 659 ATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--- 714
           A +  E  +   +  D +       D  RL QI + +L NA+ F+ KG  + L   R   
Sbjct: 236 ALRAREKGLETVLDLDPQVPPRVRGDPLRLRQILTNLLDNALKFTEKG-WIALSIRRFPP 294

Query: 715 DNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           ++G       V + G  IP +    +F  F        RR  G GLGL+IV   ++L GG
Sbjct: 295 EDGGLWLEFGVVDTGIGIPREKRHRIFQGFGQLDRSTTRRYGGSGLGLAIVRQMVSLWGG 354

Query: 771 HVSISSSDEGVTTINCRIP 789
            +S+ S +   ++ + R+P
Sbjct: 355 FLSLESEEGKGSSFHVRLP 373



 Score = 37.2 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 10/126 (7%)

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE----Q 368
            +   AI I D    +++ N  F EL       +    +   L   L       E     
Sbjct: 21  EHNPSAIVITDAAGRIEYVNPRFQELTGYTAEDVLGK-TPRVLQSGLHDRGFYEELWGTL 79

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
              + WK    +  K+ E + ++  +       V          + + E++T    L  +
Sbjct: 80  ARGEVWKGEFCNRRKTGELYWESAAIA-----PVRDRKGVVANYVAVKEDVTESKVLREE 134

Query: 429 YNTLVK 434
                +
Sbjct: 135 LLRAKE 140


>gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
 gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
          Length = 914

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 12/244 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E     ++ K+ F+  +S+E+R+PL  ++G   LLK ++   L+  Q  YV+ I++
Sbjct: 393 HRAAEEALLQNQAKSRFLAKMSHEIRTPLNGVLGMLQLLKETR---LDHSQRFYVDTIAS 449

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S + L+ ++NDILD A +++G + L +    L ++L++       +  E  +R+ +  D 
Sbjct: 450 SGSTLMAVINDILDYARIESGKLSLEHIEFDLEEMLSDTLNLFTAQAMEKRLRLHMSLDE 509

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSS 729
            +      D  RL Q+ + +LSNA+ F+S+G  V L  +R      +    F V ++G  
Sbjct: 510 GVPRHIQGDPTRLKQVLTNLLSNALKFTSEG-QVRLDVSRRRKSDGSEHLYFGVSDSGIG 568

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++    +F  F        RR  G GLGL+I +  + + GGH+ + S+    +     
Sbjct: 569 IRQEAQARLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMGGHIEVQSTPGLGSRFTFN 628

Query: 788 IPSK 791
           +P +
Sbjct: 629 LPLQ 632


>gi|303326243|ref|ZP_07356686.1| sensor histidine kinase with PAS/PAC and response regulator receiver
            domains [Desulfovibrio sp. 3_1_syn3]
 gi|302864159|gb|EFL87090.1| sensor histidine kinase with PAS/PAC and response regulator receiver
            domains [Desulfovibrio sp. 3_1_syn3]
          Length = 1228

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 106/532 (19%), Positives = 203/532 (38%), Gaps = 72/532 (13%)

Query: 301  VNDQLTHTYEILHNLTVAIA--------IFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            V D++    +    L  ++         I D +  L + N + + L    L  +   P  
Sbjct: 572  VKDEMGALSDSFDGLADSLVNSDKGPLSIVDLSGKLAYMNEAGLALIGKTLEDVLGKP-- 629

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-- 410
                         P    +      +  + + +E  +   H  +G+       S   G  
Sbjct: 630  ------YAENTIFPPGTAYC----PLACLARGTEP-EVLRHEHSGRYYQGRAESLTDGRG 678

Query: 411  ---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
               G +    ++T  ++ + +      +      +  + +      G  +  NP F +L 
Sbjct: 679  VVTGHLVHTADVTAIIEEQKRIERQRALLETIFVNSPDILWYQDKGGNYQAVNPRFAALV 738

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL- 526
                        IR + A+       +      AA   S ++ R +++G   L ++  + 
Sbjct: 739  NKTP------EEIRGLPAS-------AVFPPEVAA--RSLENFRAAIEGRTPLYTEETVY 783

Query: 527  ---------EYSIIPLPNAQTM------------LTFVNVTDSVRAERALTEKNEALRKA 565
                     +   IP  NA                      +  R +  L E      +A
Sbjct: 784  FADGHSENMDVVRIPQFNAGGEVLALLGVARDVSQRVAVEKELRRIQTELQEACATANRA 843

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLV 624
            +E K+SF+  +S+E+R+P+  IIG  ++ +      S   +       I  SS  LL L+
Sbjct: 844  NEAKSSFLARMSHEIRTPMNAIIGMANIARKKLHARSPTDELLNCANQIEVSSHHLLGLL 903

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVAD 683
            NDILD++ ++AG ++L+  +  L+ L+N V+  I  +  E NI   V  +G       AD
Sbjct: 904  NDILDISKIEAGKIELSEDSFALSKLVNSVESIIRPRCMEKNIAFNVAVEGIATAHLKAD 963

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSV 738
              RL Q+   +L NA  F+ +   ++ +  +++         F V++NG  I E+  K++
Sbjct: 964  SLRLRQVLINLLGNAAKFTPELGEILFRVRQEDRRRGERLISFLVQDNGVGIAEETLKTL 1023

Query: 739  FNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F  F   +        G GLGLSI +S I   GG ++++S+    +  +  +
Sbjct: 1024 FEPFEQGSTHIARAYGGTGLGLSISKSIIKHMGGDIAVTSTPGKGSAFSFLL 1075



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +++     + K++    ++ + +F +   ++W++D+ G+    N  +           ++
Sbjct: 688 ADVTAIIEEQKRIERQRALLETIFVNSPDILWYQDKGGNYQAVNPRFAALV---NKTPEE 744

Query: 236 AIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTLE-----HGNNKSYKIVRVL--NSFG 287
             G  +  +F  E+  R + +          + T E      G++++  +VR+   N+ G
Sbjct: 745 IRGLPASAVFPPEVAARSLENFRAAIEGRTPLYTEETVYFADGHSENMDVVRIPQFNAGG 804

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILH 313
           E     G+A DVS+ + V  +L      L 
Sbjct: 805 EVLALLGVARDVSQRVAVEKELRRIQTELQ 834


>gi|110802656|ref|YP_697530.1| sensory box histidine kinase [Clostridium perfringens SM101]
 gi|110683157|gb|ABG86527.1| sensory box histidine kinase [Clostridium perfringens SM101]
          Length = 791

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 159/381 (41%), Gaps = 16/381 (4%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +++T +  L        ++     +++ + +     +G I   N +           + 
Sbjct: 386 LKDITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLETLNYTYEEI- 444

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLSDSVLEYSIIPL 533
            G  I N+        N+    D   +I            ++  +  LSD+    + IP 
Sbjct: 445 IGMPIINLLGKNDEILNQLKLEDEEDSIKCKLVGKHSFVYVESIIRTLSDN----NEIPY 500

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                ++   N+T   R E  L  K +  +  ++I+N F  ++S+ELR+PL  I     L
Sbjct: 501 ---GKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIYSTIQL 556

Query: 594 L---KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           L     +   + N    +Y + +  +   +L L+N+++D++ ++ G +K +++   +  L
Sbjct: 557 LNSKHETNYVNFNDFYGKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVFL 616

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +  +   +       +I I   ++ +      D  ++ ++   +LSNA+ F+     + +
Sbjct: 617 VENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGKIFV 676

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
                      S+K+NG  IP++M  S+F+RFV        +  G G+GLSIV+S   LH
Sbjct: 677 DLNISKDWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELH 736

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G + + S     +     +P
Sbjct: 737 DGKIELISDGIKGSEFIVWLP 757


>gi|163848580|ref|YP_001636624.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222526515|ref|YP_002570986.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163669869|gb|ABY36235.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450394|gb|ACM54660.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 726

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 183/386 (47%), Gaps = 34/386 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ Q   ET Y+      G+    L  G+A+   +GR+  +NPA+  +W+ +     P  
Sbjct: 347 MSYQAAYETSYH-----LGQVFSSLPIGLALLDLNGRVIRANPAWNQVWRLDAQPQRPSF 401

Query: 479 HIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNA 536
           ++  ++        N+      F  +     D+  + + +L+L +    L    +P  ++
Sbjct: 402 YVGIDLVEHLLARLNDPFRLSEFCDLGQRTPDQ--TFETSLQLRNPYQELHVLSVPTRDS 459

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  LT      S R             ++D +K+ F+  VS+ELR+PLT+I+G+T++L  
Sbjct: 460 QQQLTGRLWVVSDRTRER---------ESDRLKDEFIGIVSHELRTPLTSILGYTEILLN 510

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +     S Q ++++ +S  +  L  +V D+LD++ ++AG++KLN   + L  ++ E+  
Sbjct: 511 RQDLDYES-QREFLQTVSNEAERLFKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTL 569

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            + T++  + + I   +   L    ADR ++ QI   +LSNA+ +S +GS + L   R N
Sbjct: 570 QLHTQLIHHKLLIDARTP--LPPVFADRDKVKQIIFNLLSNAIKYSPEGSEIQLTVRRAN 627

Query: 717 GD-----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
            D            +  V++ G  I  +    +F RF    +   R+  GVGLGL I   
Sbjct: 628 ADDLPATHPPGQWMLIVVRDEGIGIKPEDQARLFERFQRVDNSNTRQKSGVGLGLYISRL 687

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + LHGG + + S +   ++ +  +P
Sbjct: 688 LVELHGGRIWVKSVEGSGSSFSFTLP 713



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 52/400 (13%), Positives = 114/400 (28%), Gaps = 71/400 (17%)

Query: 51  LAKKVNETYSFLSEICDQLSKYHSLLTEN--------NCLTIVWDGKDETPEIIGQLH-Q 101
           L  + ++   F   I + +     LL             L         TP   G+    
Sbjct: 130 LELRNDDLRRFTGRISELIEALKPLLAAAIAQEGARLPQLP--------TPRFAGETPIG 181

Query: 102 RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG 161
               P     +++           +L +  +     G             A++  G  +G
Sbjct: 182 LTLTPSLRQKMIAL--------NEQLDRTIDLHELTGVILR--------RALEGSGAEAG 225

Query: 162 SCAFLRI--LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           + A +      L     E  E   + ++    +   +          W    AG  +   
Sbjct: 226 AVALVDYDKRELVLHLYEGYEA-ERSRRALPALPRQRW--------SWEIGLAGQAVQM- 275

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA-LEKNFCETVSTLEHGNNKSYK 278
              ++         +  +  +     E     ++              ST       ++ 
Sbjct: 276 ---RRPLLVRDAGREPGLPNAMPFLAELAAPIIVDDRVLAVLILHSRRSTTFTEEVLAF- 331

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
            +  L       +A  +S      +   H  ++  +L + +A+ D N  +   N ++ ++
Sbjct: 332 -ITTLCERAAHPLARAMS-YQAAYETSYHLGQVFSSLPIGLALLDLNGRVIRANPAWNQV 389

Query: 339 WEID-----LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           W +D      +F       + LL  L    +L E  +               +T + +  
Sbjct: 390 WRLDAQPQRPSFYVGIDLVEHLLARLNDPFRLSEFCD--------LGQRTPDQTFETSLQ 441

Query: 394 LPNG-QTLHVIVTSNPRG-----GTIWMFENLTVQVDLET 427
           L N  Q LHV+            G +W+  + T + + + 
Sbjct: 442 LRNPYQELHVLSVPTRDSQQQLTGRLWVVSDRTRERESDR 481


>gi|209525455|ref|ZP_03273995.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494135|gb|EDZ94450.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1019

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 11/287 (3%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R+S +   E +S   L ++ + +  A  +   + +     +  AL E  +    A+  K+
Sbjct: 479 RQSFEAWKETVSGHALGWNELEINAAMELRNTLMLAVLHFSHFALEEVAKRAEMANRAKS 538

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  I+GF DLLK       + KQ  Y++ I+A    L++L++DILDL
Sbjct: 539 EFLANMSHEIRTPMNAILGFCDLLKGLV---EDDKQQSYLDAIAAGGRALISLIDDILDL 595

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQ 689
           + ++AG ++L Y  + L  LL E++Q          + +++  +  +   +A D  RL Q
Sbjct: 596 SKIEAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQINFEPNVPKIIAFDEVRLRQ 655

Query: 690 IFSKILSNAMDFSSKGS-TVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVS 744
           I   I+ NA+ F+  GS T+ ++A   + D        V + G  I  D  + +F  FV 
Sbjct: 656 ILFNIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADTGIGINPDQHQQIFEAFVQ 715

Query: 745 NA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +      +  G GLGL+I     +L GG +++ S     +      P
Sbjct: 716 SEGQSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQLGLGSVFTFTFP 762


>gi|255528162|ref|ZP_05394988.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296185529|ref|ZP_06853939.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255508150|gb|EET84564.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296050363|gb|EFG89787.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 628

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 153/362 (42%), Gaps = 12/362 (3%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I++  + + V   D ++  +N +   L    +        I +   +  +   +     
Sbjct: 234 LIENSRDAIFV-HRDDKVIFTNESAAKLVGFTKTEDLNEKSILDFTTSNEKDNVKEKFKQ 292

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           ++   IT    E K ++   +++         I       +    ++T   + E+   + 
Sbjct: 293 IYDKKITRLVFEEKIMRSNGDIVIVKNTSTYFIYEGKQTILSILSDITSEKQVEKLEKDV 352

Query: 559 NEALRKADEIK------NSFVQHVSYELRSPLTNIIGFTDLLK---TSKLGSLNSKQSQY 609
            + ++  +E +        F  ++S+EL++PL  I     +L        G    KQ +Y
Sbjct: 353 EKNIKLLNETREFNKMITEFFSNISHELKTPLNVIFSAVQVLNLYINKNEGENIEKQHKY 412

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +   LL L+N++LD+   D+G +KL+     +  ++ ++  S+ + +    I +
Sbjct: 413 LKVVKQNCYRLLKLINNLLDITRADSGFLKLHTGRYNIVSVVEDITLSVVSYVESKGINL 472

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              +D +      D  ++ +I   +LSN++ F++ G  + +  +        SVK+ G  
Sbjct: 473 IFDTDVEEKVINFDADKIERIILNLLSNSIKFTNPGGKIYVNMSDIGNGVTISVKDTGVG 532

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPED  + +F RF       R    G G+GL +V+SF+ +HGG + + S     +    +
Sbjct: 533 IPEDKLQMIFERFGQVDKTLRRNSEGTGIGLCLVKSFVEMHGGTIEVKSKLGEGSEFIIK 592

Query: 788 IP 789
            P
Sbjct: 593 FP 594


>gi|307153178|ref|YP_003888562.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
 gi|306983406|gb|ADN15287.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
          Length = 572

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 18/254 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +     +Q +++E 
Sbjct: 291 QELEQATHAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDG-MADDPEEQREFLEE 349

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILDLA ++AG M LN S + LN+L   V      +  + N+  K+ 
Sbjct: 350 AHNSALHLLNLINDILDLAKIEAGKMVLNLSPVDLNELFEAVNNFTCPQAQQKNLSFKLK 409

Query: 673 SD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----------- 719
                       + QRLLQ+   ++ NA+ F+ +G  +++ A                  
Sbjct: 410 KPHTHTPILLYGNYQRLLQVMLNLVGNAIKFTHEGG-IVVSAEVVKKKIFCHDQEFPAIA 468

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  +  +    +F +FV    +H     G GLGL+I +  +   GG +   S 
Sbjct: 469 KISVADTGIGVSLEQQAKLFEKFVQIDGSHTKAYGGTGLGLAISQKLVQAMGGQIDFYSM 528

Query: 778 DEG-VTTINCRIPS 790
            EG  +T+   +P 
Sbjct: 529 GEGLGSTVTFTVPL 542


>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1009

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 138/278 (49%), Gaps = 12/278 (4%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T+  +  +V   +++    A  + ++    +  R +    E     + A+  K+ F+ ++
Sbjct: 310 TVLAVGGAVFLITMLFSSLAALLFSWRKWQEDARLKAE--EMARDAQAANLAKSEFLANM 367

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  +IG T LL  ++   LNS+Q +Y E +  S   LL+L+NDILDL+ ++A 
Sbjct: 368 SHEIRTPLNGVIGMTGLLLETE---LNSQQRRYAETMLYSGESLLSLINDILDLSKIEAR 424

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKIL 695
            ++L      L   +++   ++A + HE  + +  +    L      D  RL Q+ + ++
Sbjct: 425 QLELEEIEFDLAGTIDDFAATMAVRAHERGLELICLFSPGLSPLVKGDCGRLRQVLANLV 484

Query: 696 SNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
            N++ F+ KG   I  ++RD  +      F + + G  IP++   ++F +F        R
Sbjct: 485 GNSIKFTEKGEVAIKVSSRDKDEENVLLSFEISDTGVGIPQEKLTTIFEKFSQVDASTTR 544

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              G GLGL+I    ++L GG +++SS +   +  +  
Sbjct: 545 KYGGTGLGLAITRQLVDLMGGEITVSSREGSGSVFSFT 582


>gi|258593327|emb|CBE69666.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 571

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 26/264 (9%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E N  L +A   K+ F+ ++S+ELR+PL  I+GFTDL+     G + ++  + +E I
Sbjct: 301 QLEETNRDLSRASRHKSEFLANMSHELRTPLNAILGFTDLIIDGIYGQVPNELRESMEDI 360

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL L+ND+LDL+ ++AG M+LN     L  L++ V  +  +   E  + +    
Sbjct: 361 RINGRHLLRLINDVLDLSKIEAGQMRLNLGEYSLQSLIDSVISATRSLATEKRLELVARV 420

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------- 714
           +  L   + D +R+ Q+   ++ NA+ F+  G +V + A                     
Sbjct: 421 EADLPPALGDSKRMTQVLMNLVGNAIKFTPGGGSVNVTAKSVSSSEFQVSSSQPETRNPK 480

Query: 715 -----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
                       SV + G  IP +  KS+F  F         +  G GLGLSI +  + +
Sbjct: 481 PETPTSPDFIEISVADTGIGIPAEELKSIFGEFRQVDSSITREYGGSGLGLSIAKRLVEM 540

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           H G +   S     +T   RIP +
Sbjct: 541 HRGSIWADSQVGRGSTFYVRIPLR 564


>gi|237710942|ref|ZP_04541423.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454786|gb|EEO60507.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 1029

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 135/246 (54%), Gaps = 6/246 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +    E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L T        +
Sbjct: 647 NERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAT---AEEEQE 703

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +Y+  I +++T+LL L++DILDL+ ++AG +  +YS + LND+L+E++  +  +   +
Sbjct: 704 KQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETS 763

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +++             ++ RL+Q+ + +L+NA  F+S+GS +         +  F VK+
Sbjct: 764 GVQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYELCGRELYFYVKD 822

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T  
Sbjct: 823 TGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFW 880

Query: 786 CRIPSK 791
             IP +
Sbjct: 881 FTIPYQ 886


>gi|33861897|ref|NP_893458.1| two-component sensor histidine kinase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33640265|emb|CAE19800.1| two-component sensor histidine kinase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 689

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 161/393 (40%), Gaps = 46/393 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  + L++ E   L     +  I   
Sbjct: 290 EELKAAQIKQQSLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKYLLNEIPEI 349

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            S   +     +         DD R SL     TL ++  SVL+ + + L          
Sbjct: 350 LSNDLH--TNIESILKREKENDDLRCSLGEPARTLRIVLQSVLDTNKVELKGIAV----- 402

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  +N F+ +VS+ELR+PL NI  + + L   K    N
Sbjct: 403 -TIQDLTREVEL----------NAAQNRFISNVSHELRTPLFNIKSYVETLYDLKDQLSN 451

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G + +    + +   + +  ++      
Sbjct: 452 EEQLEFLGIANSETDRLTRLVNDVLDLSRLESGKI-IQLEPMEIKPAIEQTLRNYRLNAT 510

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           E N+ +    +  + S + +   LLQ+F  +L N + FS K ST+ ++A           
Sbjct: 511 EKNVSLAHDIEENIPSILGNFDLLLQVFDNLLGNGLKFSPKNSTLKIRAYTWPDSCPAFP 570

Query: 718 -----------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLS 759
                                 + +NGS I +   + +F+RF    +     +G GLGLS
Sbjct: 571 PNNNKDAPQCELVSPLPKVRIEIADNGSGISQPDQEKIFDRFYRVENAVHTEQGTGLGLS 630

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           IV   I  HGG + ++S     TT    +P ++
Sbjct: 631 IVRGIIEKHGGQIRMASELGIGTTFWFDLPLEQ 663



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D    +   N +   L+  +  FL      +
Sbjct: 285 DEANIEELKAAQIKQQSLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKYLLN 344

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           E+ E L +        +  T  E+I    K ++  + +   P  +TL +++ S       
Sbjct: 345 EIPEILSN--------DLHTNIESILKREKENDDLRCSLGEP-ARTLRIVLQSVLDTNKV 395

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    N  +
Sbjct: 396 ELKGIAVTIQDLTREVELNAAQNRFI 421


>gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1494

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 148/345 (42%), Gaps = 30/345 (8%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R   S   F          L     ++++ A  + Y +E +G  +           R+ 
Sbjct: 621 DRAIASTDVFSEPLLESSIPLCRRMALKSMLAVRTSYQDEPNGIIMLHQ----CQQMREW 676

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSF 572
            +  +E L D   +  I  +  A+ +   V    ++ A+ +AL E   A   A   K+ F
Sbjct: 677 NRDEIEFLEDVASQVGIT-IAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEF 735

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  +IG T LL   +   L  +Q  +VE I  S   LL ++NDILD + 
Sbjct: 736 LATMSHEIRTPMNAVIGMTGLLLDME---LTPEQRDFVETIRTSGDALLTIINDILDFSK 792

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
           +++G ++L      L + L E  + ++ +  E  + +  I D     + + D  RL Q+ 
Sbjct: 793 IESGKLELEKQPFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKTILGDVTRLRQVL 852

Query: 692 SKILSNAMDFSSKGSTVI-LKAARDNGD-----------------FIFSVKNNGSSIPED 733
             ++SNA+ F+S+G  ++ +KA   +                     F V++ G  IP D
Sbjct: 853 VNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKFDDSDFTESHYVLQFEVRDTGIGIPPD 912

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               +F  F        R   G GLGL+I +    L  G + ++S
Sbjct: 913 RIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQLMNGKMWVAS 957


>gi|28377005|ref|NP_783897.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254555221|ref|YP_003061638.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300769136|ref|ZP_07079025.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28269836|emb|CAD62733.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254044148|gb|ACT60941.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300493376|gb|EFK28555.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 624

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 154/400 (38%), Gaps = 31/400 (7%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V S+   G +     NL+++V+  +       +     + H+S+GV      G I +
Sbjct: 233 QVRVYSDDELGQLAKAINNLSIRVEESQESTEAERRRLDSVLSHMSDGVIATDRRGNITI 292

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N            + + G  I +I      Y       +    ++    +ER       
Sbjct: 293 INETASDFMDVTAEK-AIGNSILDILKIRDDYSLRDLIENQDELMLDFSSNER------- 344

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               D +L      +      ++ +        E+          K D  +  FV +VS+
Sbjct: 345 ----DLILNAYFSLIQRESGFISGLVCVLHDVTEQQ---------KIDNDRKQFVSNVSH 391

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT++  + + L              +++     +  ++ ++N++L L+ +D+G  
Sbjct: 392 ELRTPLTSLRSYIEALSDGAWKD-PEVAPGFLKVTQEETDRMIRMINELLSLSRMDSGTT 450

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +++   + +N++ N V       + +         IK     +      D  +  Q+   
Sbjct: 451 RVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEIDTDKFTQVLDN 510

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           I++NA+ +S  G  V  +    +   I S+ + G  IP      VF+RF  V  A    +
Sbjct: 511 IMNNAIKYSPDGGVVTCRLLETHNQVIISISDQGLGIPRADLGHVFDRFFRVDKARSRAQ 570

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL+I +  + + GG + + S +   +T    +P +
Sbjct: 571 GGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLPYE 610


>gi|163845790|ref|YP_001633834.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523498|ref|YP_002567968.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667079|gb|ABY33445.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447377|gb|ACM51643.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 762

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 2/232 (0%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E +++AD +K  F+  VS+ELR+PLT IIG+TD+L+   LG L+ +  + + Y+  +S  
Sbjct: 517 EEVQRADRLKTGFLATVSHELRTPLTTIIGYTDMLRRGVLGELSPEVQETLHYMRQASLN 576

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L+ L++DIL+ + ++AG + ++   + ++ ++  V   +  ++ E+ + + V     L  
Sbjct: 577 LMRLISDILEFSRMEAGQLIIDIEPVPVSVIVQNVVGQMQPQIREHQLHLMVNIPPDLPM 636

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             A+  RL Q+   +LSNA+ F+     + +KA         SV++ G  I     + +F
Sbjct: 637 IQANAGRLEQVLINLLSNAIKFNRPQGLIEIKAETRGEWVRISVRDTGIGIAPADQERIF 696

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F  V   +     GVGLGL+I    I   GG + + S+    +T  C +P
Sbjct: 697 EEFERVKQKNGHSVSGVGLGLAICRRLIQHMGGKIGVKSTPGEGSTFFCDLP 748


>gi|227514134|ref|ZP_03944183.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
 gi|227087505|gb|EEI22817.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
          Length = 619

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 162/417 (38%), Gaps = 34/417 (8%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPR-GGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
            E  K T  +  G  +  V V  N   G       NL+V+V+  +   +   +     + 
Sbjct: 211 EEMRKQTLRIARGDFSGQVKVMGNDELGQLAGAVNNLSVRVEESQESSDAERRRLDSVLS 270

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+S+GV      G + + N          +     G  I ++     ++           
Sbjct: 271 HMSDGVLATDRRGNLTIVNNTALQFLNIADEEQVLGKSILDVLKIRRQFS---------- 320

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             I    DE +      +L  D +L     P+      ++ +                 +
Sbjct: 321 --IRHLVDEDQDQVILDDLNEDLILSAYFSPIKRESGFVSGLVCV---------LHDVTS 369

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ +  +  FV +VS+ELR+PLT++  + + L    +        +++  +S  +  ++
Sbjct: 370 QQEEERERKEFVSNVSHELRTPLTSVKSYVEALSDGAIND-PELAPRFLGVVSDETERMI 428

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-------ENNIRIKVISD 674
            ++ND+L L+ +DAG  KLN   + +N+L N +       +        +    I     
Sbjct: 429 RMINDLLSLSRMDAGTAKLNLEYVNINELFNHILNRFDMIIKNEAADPSQKKYTIVRYFT 488

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K      D  +  Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP   
Sbjct: 489 KKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKD 548

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF  V      ++ G GLGL+I +  +NL GG + + S +   +T    +P
Sbjct: 549 LGHIFDRFFRVDKDRSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|149173448|ref|ZP_01852078.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148847630|gb|EDL61963.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 575

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 13/249 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L + N  L + +++K+ F+  +S+ELR+PL +I+GF+DLL  SK   LN KQ +YV  I
Sbjct: 283 ELAQVNLRLYEMNKLKDEFLATMSHELRTPLNSILGFSDLLANSK--DLNEKQKRYVSNI 340

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL  +ND+LDLA +++G M+L  S I + DL+     ++     + NI +    
Sbjct: 341 QMSGKNLLAQINDVLDLAKIESGKMELQLSEITVADLIERRVGNMLPLADKKNIELTSEI 400

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI-FSVKNNGSSI 730
           D K+     D  ++ QI + +LSNA+ F+ +G  V + A    +N   +   V++ G  I
Sbjct: 401 DPKIPILFQDSIKIQQILNNLLSNAIKFTPEGGRVHVAARLCGENPKLMDLIVEDTGIGI 460

Query: 731 PEDMCKSVFNRFVSNAH--------RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           P D  + +F +F                  G GLGLSI+     L  G V + S     +
Sbjct: 461 PLDEQEHIFEKFRQGKSSSESRDTMSRSYEGTGLGLSIIRELSKLLDGEVFLESEFGRGS 520

Query: 783 TINCRIPSK 791
               R+P +
Sbjct: 521 KFTARLPVR 529


>gi|227508144|ref|ZP_03938193.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511167|ref|ZP_03941216.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227085649|gb|EEI20961.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227192373|gb|EEI72440.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 617

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 153/390 (39%), Gaps = 30/390 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   +     + +    + ++++GV      G + + N    S   
Sbjct: 239 GQLASAVNNLSVRVEESHESTESERRRLDSVLANMTDGVLATDRRGNVIIINETAASFLD 298

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +EN+ + G  I ++     + Y+  D  +    +I  F  +  SL             +
Sbjct: 299 LDENQ-AMGKSILDVLDI-RKDYSLRDLLEKPDELILDFSSDDHSLILHAH--------F 348

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    +R            D+ +  FV +VS+ELR+PLT++ 
Sbjct: 349 SLIQRESGFISGLVCVLRDITEQQR-----------IDQDRKQFVSNVSHELRTPLTSVR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             ++++     +  ++ ++ND+L L+ +D+G  K+    + +N
Sbjct: 398 SYIEALHDGAWKD-PKLAPKFLKVTQDETDRMIRMINDLLTLSRMDSGTQKMEVELVNIN 456

Query: 649 DLLNEVKQSIATKMH-----ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           +L N V       +      E    IK     +      D  R  Q+   +++NA+ +S 
Sbjct: 457 ELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKRDLWVDLDTDRFTQVLDNLMNNAIKYSP 516

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
            G  +  +        I SV + G  IP      +F+RF         Q+ G GLGL+I 
Sbjct: 517 DGGVITCRLYETRNKVILSVSDQGLGIPRKDIPHIFDRFYRVDKARSRQQGGSGLGLAIS 576

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  +    G +   S +   +T    +P +
Sbjct: 577 KEVVEALHGQLWAESVEGKGSTFYIALPYE 606


>gi|323486665|ref|ZP_08091986.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum
           WAL-14163]
 gi|323400046|gb|EGA92423.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum
           WAL-14163]
          Length = 1207

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 255/692 (36%), Gaps = 84/692 (12%)

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAG 213
           +G         R+++ +     ++   L      +       L++++   V+    D   
Sbjct: 233 DGSYIWVHDLGRVVTAEDGRLAISSVCLDITVQKHAQQEVMNLYNNIPGAVFRCRFDPDY 292

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE-----KNFCETVST 268
            ++ AN    +        F         +   E    M    + +         E    
Sbjct: 293 SVIDANDGLFEYIGYTREEFAAMGNRMSAVIHPEDLAVMADKLSSQLLHGNTIHNENRLV 352

Query: 269 LEHGNNKSYKI-----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-----ILHNLTVA 318
            + G+ K   +       +        + +D+++E  +   +   YE          +V 
Sbjct: 353 CKDGSVKWVSVKAQLFSELQGERHFYCVCLDITEEKQLQKHVRELYEKELSYFAEISSVG 412

Query: 319 IAIFDQNRYLQFH-NR--SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ------- 368
             +      L    NR  +++    + +A +    + DE++E L ++    E        
Sbjct: 413 GCL---QGRLNVSKNRVENYLSSTAVPIAGIGE--TYDEIIENLAASAVDAEYGRNILCA 467

Query: 369 -------LNWKTWKENI-FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF---E 417
                   ++   K N  F   + +E  +  W    G T       +P  G +  F   +
Sbjct: 468 LNRKKVLADYAAGKVNYSFEFLRRNEAGELFW----GSTGFSSCL-HPETGDVIAFFYTK 522

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSP 476
           ++T     E K    +     ++D+  + +A      G  ++ N                
Sbjct: 523 DIT-----EAKLQEQLLGTIASLDY--DAIAEVDMVKGSRRIINFK----HGLTNTVSEK 571

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER----KSLQGTLELLSD----SVLEY 528
           G ++  +     R  +E+   +  A +  ++  E+     S    LEL  D     V  Y
Sbjct: 572 GEYLEALRNVADRCMDEAAREEYLAKMNFTYMKEQLENQDSYSFVLELKEDDGSVRVKRY 631

Query: 529 SIIPLPN--AQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRS 582
               +     +  +T  +VTD  R E+     L     A  +A+  K+ F+  +S+E+R+
Sbjct: 632 QAFYISKELGRVCITRTDVTDVARREQRQKEELASALIAAEQANAAKSDFLSRMSHEIRT 691

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  IIG T  +    LG+ + + +  +  I  SS  LL+L+NDILD++ +++G M L  
Sbjct: 692 PMNAIIGMT-AIAAQALGN-DEQVADCISKIGISSRFLLSLINDILDMSRIESGKMLLKN 749

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDF 701
             I   + LN +     ++    ++  + I D  L   ++ D  +L Q+   IL NA+ F
Sbjct: 750 DKIPTEEFLNGINSICYSQAAVKDVEYECIVDPVLDDYYIGDAMKLQQVLINILGNAIKF 809

Query: 702 SSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGV 754
           + +G  V   AA     +++    F + + G  + ED    +F+ F   +        G 
Sbjct: 810 TREGGKVTFSAAVKRKMKNDAVIRFVINDTGIGMDEDYLPHIFDPFSQESTGTTSLYGGT 869

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           GLGL+I +S ++L  G +++ S     T    
Sbjct: 870 GLGLAISKSIVDLMDGKITVRSIKGLGTEFTV 901


>gi|167828470|ref|ZP_02459941.1| two-component sensor kinase protein [Burkholderia pseudomallei 9]
 gi|226199125|ref|ZP_03794687.1| sensory box histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|225928900|gb|EEH24925.1| sensory box histidine kinase [Burkholderia pseudomallei Pakistan 9]
          Length = 723

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/509 (17%), Positives = 197/509 (38%), Gaps = 31/509 (6%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 217 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 276

Query: 353 DEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--- 408
             L      +   +         +    S+          +   +G  L V   + P   
Sbjct: 277 QVLTFRHAATQRVIDNPARVAVERRRTASL-----PPHTRFVGRSGGELPVDGNAAPTFD 331

Query: 409 ----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G + +  +++ +           +     ++     + + G DGRI L N    
Sbjct: 332 ANGKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAE 384

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+      +  G  I  +     R  + +     F +       E + L G     S+ 
Sbjct: 385 KLFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEF 443

Query: 525 VLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDA 561

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F
Sbjct: 562 RRPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKF 618

Query: 702 SSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            SK     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL+
Sbjct: 619 RSKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLA 678

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +  +  HGG + + S     TT +  +
Sbjct: 679 LCKRIVEHHGGRIFVESEPGQGTTFSFTL 707


>gi|327541216|gb|EGF27760.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1150

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/582 (17%), Positives = 214/582 (36%), Gaps = 76/582 (13%)

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           ++ R+ +    ++     V        +S +I RV        +  +V++      +L  
Sbjct: 115 LQGRLRTRLKHQRTLQHRVH------RRSLQIRRVNR-----ALRNEVTRRQETQHRLDQ 163

Query: 308 TYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +     +L       +A         + N  F     +    +  +   +   + + +  
Sbjct: 164 SETTFQSLIDRMHLQVARKSAEGVFTYANEQFCADIGMTPVDVIGSTDAELFGDSIGAK- 222

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMF 416
                  ++    ++ S  ++ +   +    P+G+     V   P         G   +F
Sbjct: 223 -------YRADDLSVMSTGQAVDKV-EVHPGPDGRIGFAQVFKAPEYDQNGQCVGVQIIF 274

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T +   E         +    D   + V +      I  +NP+   L +    RL  
Sbjct: 275 WDITEKHRNEIALRDSEARKRALFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLV- 333

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G  + ++ +  S  +      +     +   D              +S +    IP+ +A
Sbjct: 334 GRPLNDLISPVSNQWGGLPLAERHQLRLRRGDGS----------SFESEVSIHHIPVGDA 383

Query: 537 QTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                 +      RA   A+ E   A  +A+  K  F+  +S+ELR+PL  I G TDLL 
Sbjct: 384 TGQAVIIRDVTLQRAAFEAMREAKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLG 443

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +L +   +YV  I+ ++ +L +++ DILD A ++AG + ++   + L++++ +  
Sbjct: 444 QQ---TLPTAARRYVNLIAQNTELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAF 500

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +A ++ +  +R+ + I+       +AD +R+ QI   +  NA+ F+++G  V L+   
Sbjct: 501 GCLAVRVADKPVRLCLSIAPDTPRRVIADPKRIRQIVINLAGNAIKFTNRGE-VSLRLGP 559

Query: 715 DNG--------------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
                                         F  +V + G  I  +    +F+ F      
Sbjct: 560 IGDVPPSHSNDANSPELTTNESTDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRG 619

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +   G GLGL+I        GG ++++S  +  +   C +
Sbjct: 620 TNKQFGGTGLGLAIARGLAQRMGGDITVTSQVDLGSQFQCAL 661



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 90/288 (31%), Gaps = 41/288 (14%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+        +L    + F+ L D +   V  +   G   +AN  +       G+ 
Sbjct: 146 ALRNEVTRRQETQHRLDQSETTFQSLIDRMHLQVARKSAEGVFTYANEQF---CADIGMT 202

Query: 233 FQKAIGE-SRKLFKEEIKKR--------MISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
               IG    +LF + I  +        M +  A++K           G  + +K     
Sbjct: 203 PVDVIGSTDAELFGDSIGAKYRADDLSVMSTGQAVDKVEVHPGPDGRIGFAQVFKAPEYD 262

Query: 284 NSFGEAGIAI---DVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            +    G+ I   D+++    EI + D       +      A+ + D  R +   N S  
Sbjct: 263 QNGQCVGVQIIFWDITEKHRNEIALRDSEARKRALFDAAGDAVLLIDDQRAIVEANPSAS 322

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           EL +     L   P ND +         LP                  +E H+      +
Sbjct: 323 ELLQAGGGRLVGRPLNDLISPVSNQWGGLP-----------------LAERHQLRLRRGD 365

Query: 397 GQTLHVIVTSN--PRG---GTIWMFENLTVQVDLETKYNTLVKVQGET 439
           G +    V+ +  P G   G   +  ++T+Q               + 
Sbjct: 366 GSSFESEVSIHHIPVGDATGQAVIIRDVTLQRAAFEAMREAKAAAEQA 413


>gi|88858788|ref|ZP_01133429.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
 gi|88819014|gb|EAR28828.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
          Length = 1483

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 118/518 (22%), Positives = 216/518 (41%), Gaps = 40/518 (7%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V+++  + +Q ++  + +L++   AI   D+   +    +S   L   + A +    +  
Sbjct: 476 VTEQTQLLEQKSNFQKSVLNSSQNAIIATDKEGVITLFTQSAALLLGFEEAQVIAKKNIM 535

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSS---ETHKDTWHLPNGQTLHVIVTSNPR- 409
            L+   +S  K   Q  +K W +        S      KD   +P   T+  I+  +   
Sbjct: 536 SLISSDKSTLK---QDTFKLWVDKTTDSTCPSLCFFQTKDGLDIPVSITISDILDEHSEL 592

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G + + +NLT +  LE      + +    +D+  + +      G +  SNP    L + 
Sbjct: 593 SGYLIVADNLTEKKSLEHH----ISLVNAALDNSQDMLLWLDESGHLLHSNPYACVLLEY 648

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII--TSFDDERKSLQGTLE----LLSD 523
            +N  +          T  ++    +   L   II       ER  L+ T      L+S 
Sbjct: 649 TQNNFNQQN-----IHTLLKFEQGENWAHLKQKIIKTQRLSCERNFLKATGTTIPMLISA 703

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           SVL      +          N+T+ ++ E  L         A +IK  F+ ++S+ELR+P
Sbjct: 704 SVLTIDKKTI----IYFAAKNITERLKEEAELKLALHQADAASKIKTDFIANMSHELRTP 759

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I G   +L+ SK   L  +Q   ++   A    L   +NDI+DL +V+ G + L   
Sbjct: 760 LNAINGLLQILELSK---LTQEQLSTLDSAKAEVIGLNQTINDIMDLTSVERGELILEEQ 816

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
              L++LLN +   + T   +  I I       L  +   D  +L QI   I SNA+ FS
Sbjct: 817 DFNLDELLNTIGTQLNTLADDKPIEIHFSLTEDLPLAMHGDANKLKQILWNIASNAVKFS 876

Query: 703 SKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
            KG  V+   +  +  N  ++  ++ + G  + +D  + +F+ F    +    Q  G+G+
Sbjct: 877 LKGEVVLSFSVTISNRNSFWLNIAISDTGIGVNQDKLEQIFDLFTQVDNSNTRQYGGLGI 936

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI---PSK 791
           GL+I    + L GG + + S  +  +T +C +   P+K
Sbjct: 937 GLTIASQLVKLMGGSIKVCSQLDAGSTFSCSVLMQPAK 974


>gi|288941101|ref|YP_003443341.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896473|gb|ADC62309.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 970

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 172/399 (43%), Gaps = 30/399 (7%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L  + + E        +       + + V +  P+G     NP F SL    E  +   T
Sbjct: 209 LAARTEAENALRESQTLLQTLFRAIPDLVWLKDPNGVFLGCNPRFESLLGLPEAEIVGKT 268

Query: 479 HIRNIAATCSRYYNESDGWDLFAA--------IITSFDDERKSLQGTLELLSDSV----- 525
               +    +  +  +D   + A         +  + D  R+ +Q     + DS      
Sbjct: 269 DYDFVDRAQADLFRANDQNAIAAGGPHVNEEVLAFASDGHRELIQVVKTPIRDSAGTLIG 328

Query: 526 ---LEYSIIPLP-NAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYE 579
              +   I  L    Q +    +  + + AER   L    E    A++ K+ F+  +S+E
Sbjct: 329 VLGIGRDITALKLTEQELQNHRDHLEDLVAERTAELMAAREQAEAANQAKSVFLATMSHE 388

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++GF +LL   +   L+++    V  I  S  +LLNL+ DILD + ++A  ++
Sbjct: 389 IRTPMNAVLGFCNLLYRRR---LDAESHDLVRKIQVSGALLLNLIEDILDFSRIEANRLE 445

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +  S   L  +L ++   + T+     + +++    ++   + D +RL Q+  K+L+NA+
Sbjct: 446 IAASPFDLRRVLEDLAAIMETEAGRKGLELEIAPLPEVNDLIGDERRLKQVLLKLLANAV 505

Query: 700 DFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
            F+ +G  V ++   ++ D       FSV+++G  I      ++F+ F        RR  
Sbjct: 506 KFTEQG-RVEIRVDLESEDMREVRLRFSVRDSGIGIAPAQQAAIFSAFNQADGSISRRFG 564

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  ++  GG + ++S     +     +P +
Sbjct: 565 GTGLGLAISQQLVHAMGGRLQVTSELGRGSEFWFELPFR 603



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 14/150 (9%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TETEGIV 232
           LA  T     L    ++ + LF ++  LVW +D  G  L  N  ++        E  G  
Sbjct: 209 LAARTEAENALRESQTLLQTLFRAIPDLVWLKDPNGVFLGCNPRFESLLGLPEAEIVGKT 268

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NS 285
               +  ++  LF+   +  + +         E ++    G+ +  ++V+          
Sbjct: 269 DYDFVDRAQADLFRANDQNAIAAGGPHVNE--EVLAFASDGHRELIQVVKTPIRDSAGTL 326

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNL 315
            G  GI  D++       +L +  + L +L
Sbjct: 327 IGVLGIGRDITALKLTEQELQNHRDHLEDL 356



 Score = 41.1 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 98/298 (32%), Gaps = 40/298 (13%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +A     E  + +  T    +   +   + + D N      N  F  L  +  A +    
Sbjct: 209 LAARTEAENALRESQTLLQTLFRAIPDLVWLKDPNGVFLGCNPRFESLLGLPEAEIVGK- 267

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---NG--QTLHVIVT 405
           ++ + ++  ++            ++ N  +   +   H +   L    +G  + + V+ T
Sbjct: 268 TDYDFVDRAQA----------DLFRANDQNAIAAGGPHVNEEVLAFASDGHRELIQVVKT 317

Query: 406 SNPRG-----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                     G + +  ++T     E +            DHL + VA       +  + 
Sbjct: 318 PIRDSAGTLIGVLGIGRDITALKLTEQELQNHR-------DHLEDLVA--ERTAELMAAR 368

Query: 461 PAFRSLWKTEENRLSPGTH-----IRNIAATCSRYYN---ESDGWDLFAAIITSFDDERK 512
               +  + +   L+  +H     +  +   C+  Y    +++  DL   I  S      
Sbjct: 369 EQAEAANQAKSVFLATMSHEIRTPMNAVLGFCNLLYRRRLDAESHDLVRKIQVSGALLLN 428

Query: 513 SLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            ++  L+   +  + LE +  P    + +     + ++    + L  +   L + +++
Sbjct: 429 LIEDILDFSRIEANRLEIAASPFDLRRVLEDLAAIMETEAGRKGLELEIAPLPEVNDL 486


>gi|260894821|ref|ZP_05903317.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308089386|gb|EFO39081.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
          Length = 632

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 140/300 (46%), Gaps = 24/300 (8%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS--------------VRAERALTE 557
           + L   L+LLS +V ++S    P+  T+       +                  +  L  
Sbjct: 173 RLLVNPLQLLSGAVSDFSGGNAPSTVTLPKRWCFDEVSLLAQKYNRSVQKVREHQAELEA 232

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + +    A+  K+ F+  +S+E+R+P   IIG   LL  +K   L+ +Q ++VE I  SS
Sbjct: 233 ERDKAEVANRKKSEFLATMSHEIRTPTNGIIGVASLLSDTK---LDPQQKEFVEIIDNSS 289

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L+ +++DILD + V+AG ++L   T     LL++V      K  + N+++    D KL
Sbjct: 290 QSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKL 349

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPE 732
                 D  RL Q+ + +LSNA+ F+ +G   +L +  +         F V ++G  I +
Sbjct: 350 PAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAK 409

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  ++VF RF        R   G GLGL+I    +++ GG + ++S     +  +  IP 
Sbjct: 410 EHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTSELGLGSCFDFTIPL 469


>gi|149198960|ref|ZP_01876001.1| sensory transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
 gi|149137955|gb|EDM26367.1| sensory transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
          Length = 493

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 147/328 (44%), Gaps = 10/328 (3%)

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-QGTLELLSD 523
            L +     L    +   +A    +   +    + F        + R    + T+E L  
Sbjct: 72  ELSRDMSLPLVLKDYFTEVAELDGKLILKDFLVNEFNFSNQDITNMRHKFSEKTVEQLLH 131

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             LE     L N  T+L    +  +  AERA     E   KA+  K+ F+ ++S+ELR+P
Sbjct: 132 E-LELKNEELANHGTLLEEKVIRRTRDAERA----REDAEKANVAKSQFLSNMSHELRTP 186

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  ++G+T +L+ +    L  K    ++ I      LL ++NDILD++ ++AG + L Y 
Sbjct: 187 LNGVLGYTQVLQNA--SDLQDKYKGSLKGIMNCGEHLLTVINDILDISKIEAGKLDLVYD 244

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
            + +  ++++ +  +  K  E  + +    D ++  S  +D  +L QI   ++ NA+ ++
Sbjct: 245 EVDVLKVVSDTEDILRYKALEKGLSLNHSLDPEIPQSIKSDPTKLRQILVNLVGNAVKYT 304

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           + G  V LK  +      FS+ + G  IP+D    VF  F  +    Q  G GLGL+I  
Sbjct: 305 ASGG-VELKLKKSGDMIKFSIIDTGIGIPKDKQSHVFEAFRQDEGGRQEGGTGLGLAICV 363

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
             +   GG + + S +   +T     P+
Sbjct: 364 KLVEAFGGEIGLESEEGKGSTFWFTHPA 391


>gi|116493524|ref|YP_805259.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103674|gb|ABJ68817.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 615

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 146/365 (40%), Gaps = 29/365 (7%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +     + ++++GV      GRI + N          EN    G  I +I      +   
Sbjct: 264 RRLDSVLGYMTDGVLATDRRGRITIVNEMATDFLNL-ENDQIVGKSILDILDLRGTF--- 319

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                    +    +++ + +    +   D +L  S   +      ++ +        E+
Sbjct: 320 --------TLRDLLENQEQVVLDLSDDDQDLILHASFALIQRESGFISGLVCVLHDVTEQ 371

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                     K D+ +  FV +VS+ELR+PLT++  + + L              +++  
Sbjct: 372 Q---------KIDQDRKRFVSNVSHELRTPLTSMKSYIEALVEGAWKD-PEVAPNFLKVT 421

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-----ENNIR 668
              +  ++ ++ND+L+L+ +D G  +L    + LN+L N +       +      + N  
Sbjct: 422 QEETDRMMRMINDLLNLSRMDLGTARLEREYVNLNELFNHILDRFDMILKNSDKPDKNYS 481

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           IK     +      D  ++ Q+   I++NA+ +S  G  +  +    +   I S+ + G 
Sbjct: 482 IKRDFTRRDIWVEVDTDKIQQVLDNIMNNAIKYSPDGGIITCRLLETHNHVIMSITDQGL 541

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP+D    +F+RF          + G GLGL+I +  I LHGG + + S +   +T   
Sbjct: 542 GIPKDSISHIFDRFYRVDKARSRAQGGTGLGLAISKEVIQLHGGRIWVESREGEGSTFYI 601

Query: 787 RIPSK 791
            +P +
Sbjct: 602 SLPYE 606


>gi|317471741|ref|ZP_07931081.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900764|gb|EFV22738.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 799

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 159/399 (39%), Gaps = 35/399 (8%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG--RIKLSNPAFRSLWKTEENRL 474
           +NL+ +  LE +       +   I  +  G A    +    +      F  +    E + 
Sbjct: 131 DNLSPEYKLEKRDRE----REAIIRTIPGGFARVDAEDLRTVIWYGGGFLQMIGYTEEQF 186

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV----LEYSI 530
                   + + C   + +     +     +    E  + +G +      +    + +S 
Sbjct: 187 EN-----ELQSKCDYVHPDDIERTVEIMEKSRETGEDTAAEGRIVTRDGKIKILTMTFSY 241

Query: 531 IPLPNAQ---------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +   ++           +       +  R + AL +  +A R A+  K +F+  +S+++R
Sbjct: 242 VSAKDSWDGKDSFYSIGIDITKEREEQERQKTALQDAYQAARVANAAKTNFLSSMSHDIR 301

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+G   + + +       K    +  I+ SS  LL+L+N++LD++ +++G + ++
Sbjct: 302 TPMNAIMGMAAIAQANL--ECPDKIQDCLNKINTSSRHLLSLINEVLDMSKIESGKINIS 359

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              I L D++  V       ++  + + ++ I        +AD  RL Q+   ++SNA+ 
Sbjct: 360 LEQISLPDMIGAVMDMCLPLINGKHQQFQMSIGHINHEHVIADGDRLRQVLMNLISNAVK 419

Query: 701 FSSKGSTVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRR 752
           ++ +G T+ L+             + F   + G  I E+    +F  F         + +
Sbjct: 420 YTPEGGTITLRINEQYSPNPKKSQYEFICIDTGIGISEEFLPHIFEPFSRAEDSRISKIQ 479

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLG++I E+ + +  G + + S     +     +P +
Sbjct: 480 GTGLGMAITENIVRMMNGTIGVESKIGTGSKFTVSVPLE 518


>gi|326793261|ref|YP_004311082.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
 gi|326544025|gb|ADZ85884.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
          Length = 817

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 124/749 (16%), Positives = 265/749 (35%), Gaps = 110/749 (14%)

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE-TTLKCKKLSN 190
           E LR     F +     ND  I  EG          IL++     E      L+  +   
Sbjct: 60  ELLRLGHTKFLVSLRNINDEEISYEG----------ILNIGKWNEEQIYYIILRENEPIY 109

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--EGIVFQKAIGESRKLFKEEI 248
           ++   + L D L F+VW +DQ     + N  +        + +     +G++ +    + 
Sbjct: 110 NVKELERLLDKLPFVVWLKDQEKKYRFVNECFINKASALTQHLERSSILGKNDEDIWNQE 169

Query: 249 KKRMISSSALE-----KNFCETVSTLEHGNNKS--YKIVRVLNSFGEA----GIAIDVSK 297
             R+I     E     +  C           +   +  + + +S G+     G+  +++ 
Sbjct: 170 FTRIIQEGEDELLIKKEAICYEKVIEIDNKQRWYQFNFIPITSSSGQVQYILGMREEITL 229

Query: 298 EITVNDQLTH-----------------------------------TYEILHNL-TVAIAI 321
              +  QL                                       E+L  +    I I
Sbjct: 230 YKKMERQLDKNYYKEYMRNKLYTQDIELGSEHIKYLYQMKGINGSIQEVLEEIEADGIII 289

Query: 322 --FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
             +++ +   +       +   +L  +      +   + + S   L        + + I 
Sbjct: 290 GIYNKAKNSLYCTYK-EGMESCELDLMDEIKLTNSFRDEMISGGNLWGIKLAHDYYKYID 348

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL--------TVQVDLETKYNT 431
              + +   KD  +L       +++     G  I  + NL        T    L  +   
Sbjct: 349 IEQREAFKVKDLSYLG---CYPIVLEDELLGILICSYSNLANANPSRETQIFKLSRQL-- 403

Query: 432 LVKVQGETI----------------------DHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            + +Q E +                      +  S+ +A+   DGR++  N A+ S+   
Sbjct: 404 ALIIQNEVLTKVVKRELEKREELEEELQNFAETASDLMAIIAMDGRVEKVNGAWESVLGW 463

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           + + L   +    +     + + E          +          +G  +  S   +E+S
Sbjct: 464 KPSELIGRSSSDFVYREDQQRFFEKKFCINNERAVRGI-----ICRGYCKNKSYKWIEWS 518

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I    N Q  +         + +    +  E   + ++IK+ F  ++S+E R+PL  I+ 
Sbjct: 519 IKYTSNKQYYVCTGRDISKQKEQEEARKVYEEALQIEKIKSEFFANMSHEFRTPLNIILA 578

Query: 590 FTDLLKTSKLG-----SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              LL+            N    +Y+  +  ++  +L L N+I++L ++D G  K+    
Sbjct: 579 TVQLLEKGIKQGHINVQPNFDLVKYLSTVKQNTYRILRLSNNIMELTSIDTGHYKMKLEN 638

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + + +++ E   S+A  +    I +   +D +      D ++L +I   ILSN++ ++ +
Sbjct: 639 LNIVNVIEETTLSVADYIESRGITLLFDTDVEEVITACDAEKLERIILNILSNSVKYTYR 698

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  + +  +  +   I  VK+ G  IP++   ++FN F+        +  G G+GL++V+
Sbjct: 699 GGIISVNLSLQDEGLIVVVKDTGVGIPKEKLTTIFNPFIQVDSLLTRKCEGSGIGLALVK 758

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           S + +H G +   S     T I  + P +
Sbjct: 759 SLVKMHEGTIDAKSELGKGTEIVIKFPIR 787


>gi|283850533|ref|ZP_06367821.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574104|gb|EFC22076.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 712

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 161/387 (41%), Gaps = 15/387 (3%)

Query: 415 MFENLTVQVDL-ETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEEN 472
           ++ NL  +V     +     +        +S+ V V   + G +   N A    +     
Sbjct: 168 LYRNLEREVASRTEELRASEERYRALFSSVSDPVLVADRNTGILVECNEAAERFFGRARE 227

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L  G   R +    S   N        +A  +    +         +    V+  +   
Sbjct: 228 EL-VGRPQRELHPMESPGSNGLAENFRSSATPSGPQTDVLLRAAGGNIRIAEVMTNAFDM 286

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +  F +VT+  +AE AL    E    A  +K+ F+ ++S+E+R+PL  I+G   
Sbjct: 287 QGQELMLGVFRDVTERKQAEEALQAAKEQAEAATRVKSEFLANMSHEIRTPLNGILGILQ 346

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  ++   L+++Q +Y+     SS  L  L++DILDL+ ++AG + L      + D   
Sbjct: 347 LLGHTR---LDAEQREYLLAAIQSSHRLTRLLSDILDLSRIEAGKLALREDAFEIADQRE 403

Query: 653 EVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                      E  + +    DG+     V D+ RL Q+   ++ NA+ F+ KG  V ++
Sbjct: 404 ATLGLFGMTAREKGLELDFRIDGRMPPRLVGDKSRLQQVLFNLVGNAIKFTEKG-RVRVE 462

Query: 712 AARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESF 764
                        +F + + G  I + M ++VF  F     ++    +G GLGLSIV   
Sbjct: 463 VEPIGWCKGVLRVLFVISDTGIGIDDAMLQAVFEPFTQAEVSYTRSFQGAGLGLSIVRKL 522

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + + GG ++I S+    TT+ C +P +
Sbjct: 523 VGIMGGELTIDSTTGAGTTVYCSLPFR 549



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 50/167 (29%), Gaps = 23/167 (13%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSND 353
            S+   +         +  +++  + + D+N   L   N +    +      L   P   
Sbjct: 177 ASRTEELRASEERYRALFSSVSDPVLVADRNTGILVECNEAAERFFGRAREELVGRPQ-- 234

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRG 410
                 R  + + E        EN  S    S    D      G   +   V+  +    
Sbjct: 235 ------RELHPM-ESPGSNGLAENFRSSATPSGPQTDVLLRAAGGNIRIAEVMTNAFDMQ 287

Query: 411 G---TIWMFENLTVQVDLETKYNTLV-------KVQGETIDHLSEGV 447
           G    + +F ++T +   E              +V+ E + ++S  +
Sbjct: 288 GQELMLGVFRDVTERKQAEEALQAAKEQAEAATRVKSEFLANMSHEI 334



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 87/269 (32%), Gaps = 38/269 (14%)

Query: 56  NETYSFLSEICDQLSKYHSLLTENNCLT--------IVWDGKDETPEIIGQLHQRIDIPQ 107
             T+  L+ + ++  +  +LL   + L         + + G D  P + G L   + +  
Sbjct: 60  EATHKILAVLPER-RRDRALLAAMDPLAALSHQMEKVTYIGPDSPPALRGDLLPALGV-- 116

Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA--IKIEGRVSGSCAF 165
                            + L     ++   G  F L     +  +  I    R++   A 
Sbjct: 117 ------------GDSVVVPLQHGGARI---GVLFLLGIMDTHGISSIISTLDRLAPILAL 161

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANIS--- 221
           + + +     +   E   + ++L      ++ LF S+   V   D+  G ++  N +   
Sbjct: 162 I-LRNAHLYRNLEREVASRTEELRASEERYRALFSSVSDPVLVADRNTGILVECNEAAER 220

Query: 222 -YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI- 279
            + +  E      Q+ +          + +   SS+       + +     GN +  ++ 
Sbjct: 221 FFGRAREELVGRPQRELHPMESPGSNGLAENFRSSATPSGPQTDVLLRAAGGNIRIAEVM 280

Query: 280 ---VRVLNSFGEAGIAIDVSKEITVNDQL 305
                +       G+  DV++     + L
Sbjct: 281 TNAFDMQGQELMLGVFRDVTERKQAEEAL 309


>gi|255292073|dbj|BAH90553.1| serine/threonine kinase [uncultured bacterium]
 gi|255292618|dbj|BAH89728.1| serine/threonine kinase [uncultured bacterium]
          Length = 2112

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 164/386 (42%), Gaps = 26/386 (6%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                L     +         D+  EG+    PDG +  +NP    +            + 
Sbjct: 1431 ENARLYADLQSTQDEYRALYDNAIEGLFRISPDGLLVSANPTLARILGFSSIDALQDEYR 1490

Query: 481  RNIAATCSRYYNESDGWDLFA----AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              I        NE  G  L A     ++  F+ +  +  G +  ++   L   +   P  
Sbjct: 1491 DLIDRAF--LTNEQAGQFLSALEDQQLVNGFEAQGVTRDGRVFWMA---LTARLNHDPEL 1545

Query: 537  QTMLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
               +    +  S R ER   + + +    A + K+ F+ ++S+E+R+P+  I+GF+ L  
Sbjct: 1546 GDYIDGSLIDISERIEREQADKQRQIAEAATQAKSEFLANMSHEIRTPMNAIVGFSKLAL 1605

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             S   SL+ KQ +YV  I  ++  LL LV+D+LD + ++AG + L      L++ L EV+
Sbjct: 1606 ES---SLDRKQHEYVTSIRNAAENLLTLVSDVLDFSKIEAGKLVLETRPFRLSETLTEVE 1662

Query: 656  QSIATKMHENNIRIKVISD-------GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +   T++   N+ +++           + G    D  R+ Q+   ++ NA+ F+  G  V
Sbjct: 1663 RLFRTEVRRRNLTLEIEDRTGEHPGFPEDGVLTGDALRIQQVLVNLVGNAVKFTETGGIV 1722

Query: 709  I--LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
            I     A ++G  +   SV + G  IP+     +F  F        RR  G GLGL+I E
Sbjct: 1723 IGAEVIAANHGQLVLNLSVTDTGIGIPQAQLARLFESFEQAETSTTRRYGGTGLGLTISE 1782

Query: 763  SFINLHGGHVSISSSDEGVTTINCRI 788
              ++L GG + ++S+    +     +
Sbjct: 1783 RLVDLMGGEIHVTSTVGEGSCFQFTL 1808


>gi|308272911|emb|CBX29515.1| hypothetical protein N47_J04960 [uncultured Desulfobacterium sp.]
          Length = 616

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 164/379 (43%), Gaps = 23/379 (6%)

Query: 419 LTVQVDLETKYN--TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +  Q+  E + +   + +   E    L   +A+    GR+++S       +  ++   + 
Sbjct: 248 VLRQIRKEERISLLRIRRATEEVFKALPTAIALLDLKGRVEISTETADRHFGLKQGVFAE 307

Query: 477 GTHIRNIAATCSRYYNESD--GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                 +     R  NE+     D     I  F D R+       +    V E       
Sbjct: 308 MLGYEWLNPLIQRALNENRIIEHDSKHGYIQQFIDNREYFFQPTVVPIPVVPE------- 360

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +     + + D  +             +  E+K+  +  VS++L++PLT++     LL
Sbjct: 361 GKELTGVALILKDVTQM-----------YEQQELKSGMISTVSHQLKTPLTSLRMSIYLL 409

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +G LN KQ + +      S  LLN++ND+LDL  +++G   ++   +    L+ +V
Sbjct: 410 LEESVGVLNEKQIELLIAARDDSERLLNIINDLLDLNCIESGKSDVSLKPVSPQTLVRDV 469

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             S   +  +  + +       L   VAD +++  +F+ +LSNA+ F+S G +V + A  
Sbjct: 470 IDSFLPEARDKGVTMANAVPDDLPEVVADAEKIRHVFTNLLSNAIRFTSPGGSVSVLADL 529

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +  +  FSV++ G+ I  +  K +F  F     + ++ GVGLGL+IV+  I  HGG VS 
Sbjct: 530 EPDNVRFSVEDTGAGITAEHLKHLFEPFYRAPGQDEKSGVGLGLAIVKEIIQAHGGDVSA 589

Query: 775 SSSDEGVTTINCRIP-SKE 792
            S     T+    +P +KE
Sbjct: 590 ESEIGKGTSFGFTLPLAKE 608


>gi|226945757|ref|YP_002800830.1| alginate regulatory hybrid histidine protein kinase GacS
           [Azotobacter vinelandii DJ]
 gi|226720684|gb|ACO79855.1| alginate regulatory hybrid histidine protein kinase GacS
           [Azotobacter vinelandii DJ]
          Length = 905

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 150/326 (46%), Gaps = 16/326 (4%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L  G  I +      +  ++     L   + +    E   L   +  +++ V++++   +
Sbjct: 175 LRVGRSISDPLRRIQQGVSQLRDGHLETRLPSLRSHELDELAAGINRMAE-VMQHAQEEM 233

Query: 534 PNAQTMLTFVNVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            N+    T     +    E     L        +A  IK+ F+ ++S+E+R+PL  IIGF
Sbjct: 234 QNSIDQATEDVRQNLETIEIQNIELDMVRREALEASRIKSEFLANMSHEIRTPLNGIIGF 293

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+      L  +Q  Y+  I  S+  LL+++N+ILD + ++AG + L ++   L +L
Sbjct: 294 TNLLQK---CELTPRQHDYLNTIQKSADSLLDIINEILDFSKIEAGKLVLEHTPFNLREL 350

Query: 651 LNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + +    +A   H  ++ +  +I      +   D QRL Q+ + ++SNA+ F+++G T+ 
Sbjct: 351 IQDTLTILAPAAHAKHLELVSLIYRDTPLALNGDPQRLRQVLTNLISNAIKFTNEG-TIA 409

Query: 710 LKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
           ++A  ++          SV + G  + ++   ++F  F    +    Q  G GLGL I +
Sbjct: 410 VRAMVEDIGEEFAQLRISVHDTGIGLSQEDLNALFQAFSQADNSLTRQAGGTGLGLVISK 469

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
             I   GG + ++S     +    R+
Sbjct: 470 RLIEQMGGEIGVNSVPGEGSEFWIRL 495


>gi|162451219|ref|YP_001613586.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum
           'So ce 56']
 gi|161161801|emb|CAN93106.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum
           'So ce 56']
          Length = 498

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 159/374 (42%), Gaps = 10/374 (2%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +       +  T   +    +D +SEGV V   DGRI L+N A R++    E+ L     
Sbjct: 126 SELSRSTAEVRTERALLAGILDGMSEGVLVLDRDGRILLANRALRAMASLGEDALGRSVI 185

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                A  +     +   D    +     D  ++L   L +          +     + +
Sbjct: 186 ESIRNARLTEAIQLAGKRDEPVDVEV---DLGRTLPRRLLVRVSRRKGPERLGHDEREAL 242

Query: 540 LTFVNVTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    D   AE    A+      LR+ + I+  FV +VS+ELR+P+T I    + L+ 
Sbjct: 243 AAWGADHDGASAEPGLIAVFHDVTDLRRLETIRTDFVANVSHELRTPVTAISTAAETLQL 302

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L     + +++V+ I   +  L +LV+D+LDL+ ++A   +L  S + +   +  V Q
Sbjct: 303 GALKD-PHEAAEFVDVIDRHAKRLRHLVDDLLDLSKIEAKNFRLALSELDIAPAIEHVTQ 361

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +A       + + V +   L     DR+ L Q+   +L NA+ ++ +G+ V ++A   +
Sbjct: 362 LLAEAARRRRVTLTVDASA-LPPVRCDRRALEQVLMNLLDNAIKYAGEGAHVTVRARSVD 420

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                +V ++G  IP      +F RF        R   G GLGL+IV+  + L  G + +
Sbjct: 421 QQVTLAVADDGPGIPPHHLGRIFERFYRVDAGRSRDLGGTGLGLAIVKHLVELMNGSIEV 480

Query: 775 SSSDEGVTTINCRI 788
            S+    T    R+
Sbjct: 481 ESAIGRGTQFTVRL 494



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 82/279 (29%), Gaps = 18/279 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA----TNPSNDE 354
             V  +      IL  ++  + + D++  +   NR+   +  +    L      +  N  
Sbjct: 133 AEVRTERALLAGILDGMSEGVLVLDRDGRILLANRALRAMASLGEDALGRSVIESIRNAR 192

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT--------S 406
           L E ++ A K  E ++ +                +       G      +         +
Sbjct: 193 LTEAIQLAGKRDEPVDVEVDLGRTLPRRLLVRVSRRKGPERLGHDEREALAAWGADHDGA 252

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           +   G I +F ++T    LET     V      +      ++      ++     A +  
Sbjct: 253 SAEPGLIAVFHDVTDLRRLETIRTDFVANVSHELRTPVTAISTAAETLQL----GALKDP 308

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +  E       H + +        + S        +  S  D   +++   +LL+++  
Sbjct: 309 HEAAEFVDVIDRHAKRLRHLVDDLLDLSKIEAKNFRLALSELDIAPAIEHVTQLLAEAAR 368

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
              +    +A  +       D    E+ L    +   K 
Sbjct: 369 RRRVTLTVDASAL--PPVRCDRRALEQVLMNLLDNAIKY 405


>gi|118443927|ref|YP_878728.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134383|gb|ABK61427.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 1666

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 123/233 (52%), Gaps = 5/233 (2%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIG---FTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            K +E++  F  ++S+ELR+PL  I       ++L  ++      K  +Y+  +  +   L
Sbjct: 1402 KYEEMRTEFFANISHELRTPLNVIFSGYQMLNVLLENEDLENKEKVDKYMGTVKQNCYRL 1461

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            + L+N+++D+  +D+G  KLN   + + +++  +  S+A  +    I +   +  +  + 
Sbjct: 1462 VRLINNLIDITKIDSGFFKLNMINVNIVNIVETITLSVAQYIESKGINLIFDTFIEEKTM 1521

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
              D  ++ +I   +LSNA+ F++KG  + +    ++ + + SVK++G  IP++    +F+
Sbjct: 1522 ACDVDKIERIILNLLSNAVKFTNKGGNIFVTMKEEDNNIVISVKDDGIGIPKEKQSIIFD 1581

Query: 741  RFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF+         R G G+GL++V+S + LH G++++ S     +    ++P K
Sbjct: 1582 RFIQVDKSLSRNREGSGIGLALVKSIVELHDGNITLKSKLGRGSEFIIKLPCK 1634


>gi|46201997|ref|ZP_00053969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 706

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 86/515 (16%), Positives = 189/515 (36%), Gaps = 45/515 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +S++     +L     IL N+       D    L   +RS   L       +     +  
Sbjct: 220 ISRQTQAQTEL---RSILDNMPDIFYRTDAQGRLLMLSRSVESLLGYKPEEVLGQ--DSA 274

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN------- 407
                  +  +            + +   S   ++      +G TL    +S        
Sbjct: 275 FFHGSDDSRPM--------LVAALEAAGGSILDYELRLRHKDGHTLWASTSSRFYYDAEG 326

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            R GT  +   +  +   E        +    +D  S+ + +F PDG +   N    + +
Sbjct: 327 NRAGTEGVVRLIEERKQAEFHIRENQALIQAMLDASSDAIMLFRPDGTLLAVNGVMAARF 386

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             + + L+          + ++    +    +       + D R  L           L+
Sbjct: 387 GRKASELTGSCLWDMFPPSVAKAREVAVTRVVETGEAIHYLDRRGEL----------YLD 436

Query: 528 YSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            SI P+P    +         ++T    AE+ L  +   L +++     F    S++LR 
Sbjct: 437 NSIYPVPGVDGVPDKVAVYSRDITAQTLAEQRLAIQMTELERSNAELEQFAYVASHDLRE 496

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD---AGIMK 639
           PL  I  +  LL+      L     +++ +    +  +  LV D+LD + ++   + I+ 
Sbjct: 497 PLRMISSYLSLLERRYGPKLEGDGLEFLAFARDGAKRMDRLVLDLLDFSRIERKGSPIIA 556

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +    +     L +  + +A  M E   ++++  DG     + D ++++++F  ++ NA+
Sbjct: 557 MEAEPV-----LRQALRHLAPSMDECGAQVEMAEDGGAVRVMGDPEQVIRLFQNLVGNAV 611

Query: 700 DFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
            + + G    V +   RD G++  ++ +NG  I     + +F  F       +  G G+G
Sbjct: 612 KYRAPGRVPRVSVSWRRDGGEWECTIADNGIGIDPQYFERIFGIFQRLHTPDRYTGTGIG 671

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L+I +  +  H G + + S+    T  +  +P+ +
Sbjct: 672 LAICKKIVERHSGRIWVDSTPGQGTAFHFTLPAAD 706



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 56/391 (14%), Positives = 119/391 (30%), Gaps = 56/391 (14%)

Query: 165 FLRILSLDG--IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
             R+ +L G  +  +      +  + +   +  + + D++  + +  D  G +L  + S 
Sbjct: 198 VDRLAALLGREVSRQAEALETQISRQTQAQTELRSILDNMPDIFYRTDAQGRLLMLSRSV 257

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF-----CETVSTLEHGNNKS- 276
           +      G   ++ +G+    F      R +  +ALE         E     + G+    
Sbjct: 258 ESLL---GYKPEEVLGQDSAFFHGSDDSRPMLVAALEAAGGSILDYELRLRHKDGHTLWA 314

Query: 277 -----YKIVRVLNSFGEAGIAIDVSKEIT----VNDQLTHTYEILHNLTVAIAIFDQNRY 327
                +      N  G  G+   + +       + +       +L   + AI +F  +  
Sbjct: 315 STSSRFYYDAEGNRAGTEGVVRLIEERKQAEFHIRENQALIQAMLDASSDAIMLFRPDGT 374

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           L   N      +    + L  +   D     +  A ++      +T  E I  + +  E 
Sbjct: 375 LLAVNGVMAARFGRKASELTGSCLWDMFPPSVAKAREVAVTRVVETG-EAIHYLDRRGEL 433

Query: 388 HKDTWHLP----NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           + D    P    +G    V V S           ++T Q   E +    +          
Sbjct: 434 YLDNSIYPVPGVDGVPDKVAVYS----------RDITAQTLAEQRLAIQMT--------- 474

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAA 502
                       ++ SN           + L      I +  +   R Y      D    
Sbjct: 475 -----------ELERSNAELEQFAYVASHDLREPLRMISSYLSLLERRYGPKLEGDGLEF 523

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +  + D  ++  +  L+LL  S +E    P+
Sbjct: 524 LAFARDGAKRMDRLVLDLLDFSRIERKGSPI 554


>gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 918

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q+ YVE I++
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDRGQAAYVETIAS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S + L++++NDILD A +++G + L      L +LL++     + +  E  +R+ +  D 
Sbjct: 452 SGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDR 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---GDFIFSVKNNGSSI 730
           G       D  RL Q+   +LSNA+ F+++G   V ++   D       ++SV ++G  I
Sbjct: 512 GVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDESGRERLLYSVSDSGIGI 571

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                K++F  F        RR  G GLGL+I    + + GG + +SS     T  +  +
Sbjct: 572 SAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDL 631

Query: 789 PS 790
           P 
Sbjct: 632 PL 633


>gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 863

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 114/586 (19%), Positives = 222/586 (37%), Gaps = 82/586 (13%)

Query: 271 HGNNKSYKIVRVLN--SFGEAGIAI---DVSKEITVNDQLTHTYEILHNLTVAIAIF--- 322
            G+     +   +   S G+A I I   D+++     D L  + E L  ++     +   
Sbjct: 144 DGSEFWVHLSATIGHDSDGQAEIHIAINDITERKQAEDALRKSEEHLRIVSDNATDWEYW 203

Query: 323 -DQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
              +  L++ + S  E+ E     F+  +P          +  ++    +   W E++  
Sbjct: 204 RGPDGKLKWVSPSCKEITEYTPEEFMGESPL---------AIQQIVYPEDQGLWLEHLKQ 254

Query: 381 VYKSSETHKDTWHL---PNGQTLHV--IVTSNPRGGTIWM-----FENLTVQVDLETK-- 428
           +      H +        +G  + +  I         +++       ++T +  +E    
Sbjct: 255 LDTQEPPHLELEFRIIKRSGDVVWINHICKPIYSREGVYLGRRVCNRDITARKTIEKALT 314

Query: 429 --------------YNTLVKVQGET-------IDHL-SEGV----AVFGPDGRIKLSNPA 462
                         + +L +   ET       ID L  +G+         DG  + +   
Sbjct: 315 FLATCCSARSGVAFFESLARYLAETLGMDFVCIDRLEGDGLNARTLAVYFDGHFEDNITY 374

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                   +          +             G    + +  +  D      G + ++ 
Sbjct: 375 ALKDTPCGDVVGKESCCFPHDVRGLFPKDAVLQGMQAESYVGITLWDSAGRPNGLIAVIG 434

Query: 523 -----DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                D  L  SI+ L   +         + ++AE AL     A   A++ K+ F+ ++S
Sbjct: 435 RTPLKDPWLAESILQLAGVRA----GGELERLQAEEALQSAKIAAESANKAKSVFLANMS 490

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  ++G   LL T+   + N +Q +Y+     S+  L  L++DILD++ ++AG 
Sbjct: 491 HEIRTPLNGVLGMLQLLDTT---APNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGR 547

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
           M +      + +  + +K+  A +     + ++      L    + D  RL QI   ++ 
Sbjct: 548 MDIVELEFNIQNTWDSIKELFALEARRKGLVLEFGCVKDLPLLLIGDEVRLRQILFNLVG 607

Query: 697 NAMDFSSKGSTVILKAA---------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           NA+ F+ KG  + + A+               + +V + G  IPE+  K +F  FV    
Sbjct: 608 NAVKFTEKG-KIRIDASLLPLLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADG 666

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              RR  G GLGLSIV   +NL GG ++I S+    TT+   +P K
Sbjct: 667 SYTRRFQGAGLGLSIVRRLVNLLGGDIAIDSTLGEGTTVYLSLPLK 712



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 104/330 (31%), Gaps = 25/330 (7%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
           + +++R    +       E VS       K    +RV     E         +I +N   
Sbjct: 3   DTLRQRAEEQTLANDAQGECVSMSPEDGRKVLHELRVHQIELEMQNEELRRSQIALNTAK 62

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
              +++     V          L   N +   ++  + + L   P +  +L+        
Sbjct: 63  ERYFDLYDLAPVGYVTISGGGLLLETNLTAATMFSTNRSDLFRKPFSSLILKQ------- 115

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTIWM---FENL 419
            +Q  +     N+ +     E         +G    V +++   +   G   +     ++
Sbjct: 116 -DQSIYYKLHNNLVAT-NMPEARDLRMMRSDGSEFWVHLSATIGHDSDGQAEIHIAINDI 173

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T +   E       +      D+ ++     GPDG++K  +P+ + + +         + 
Sbjct: 174 TERKQAEDALRKSEEHLRIVSDNATDWEYWRGPDGKLKWVSPSCKEITEYTPEEFMGESP 233

Query: 480 --IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I+ I     +         L        + E + ++ + +++    + +   P+ + +
Sbjct: 234 LAIQQIVYPEDQGLWLEHLKQLDTQEPPHLELEFRIIKRSGDVV---WINHICKPIYSRE 290

Query: 538 TML-----TFVNVTDSVRAERALTEKNEAL 562
            +         ++T     E+ALT      
Sbjct: 291 GVYLGRRVCNRDITARKTIEKALTFLATCC 320


>gi|56479368|ref|YP_160957.1| two-component hybrid sensor kinase/response regulator [Aromatoleum
           aromaticum EbN1]
 gi|56315411|emb|CAI10056.1| Two-component regulatory system protein containing hybrid kinase
           and response regulator domains [Aromatoleum aromaticum
           EbN1]
          Length = 1015

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 107/541 (19%), Positives = 196/541 (36%), Gaps = 59/541 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            EI  N Q       L  +  A+   +    + F N +   L ++ +   A      EL+
Sbjct: 324 AEIRANTQQQWLEVTLATIEDAVITVNNEMRVGFLNPAAETLLDVKVGD-AIGRDLQELV 382

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------- 409
             +  A   P    +      +  V  S E       + +G    V  T+ P        
Sbjct: 383 VLVDEATDQPMGSPFARAFSELGQVTISGEP---GLRMRDGSVRAVEATATPIRDWKGGI 439

Query: 410 GGTIWMFENLTVQVDLETK-------------------------YNTLVKVQGETIDHLS 444
            G + +  +       E                                 +         
Sbjct: 440 NGGVLVLRDARAHRAREHADRQAYAALDRRVGDRTRALERTMSVLRESTTLLRTIAASTP 499

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNESDGWDLFAAI 503
           E +     +GRI + NPA          ++          ++   R   E+D   +    
Sbjct: 500 ELIVAKSREGRIMMVNPAALQAMGLSRAQVVGHKEESLFGSSEEMRRILENDRRVIETRR 559

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEK 558
               ++ R +  GT           +  PL ++Q      +    ++T+  RA+R L + 
Sbjct: 560 PIVVEESRTTRAGT------RTFLVTKSPLRDSQGHVFGLVGVSKDITERKRAQRELEQL 613

Query: 559 -------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                       +A+  K+ F+  VS+ELRSPL  + G++ +L T+      +   +  E
Sbjct: 614 LVAEHRLRGEAERANRAKDEFLAIVSHELRSPLNALKGWSQVL-TASGNPEPATVLRAAE 672

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +      L++D+LD + + +G ++LN   + L ++++              I ++V
Sbjct: 673 AIKRNIDHQARLIDDLLDTSRIISGKLELNSRRVNLVEIVHAAIDLSWDTAKAKRIELRV 732

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            +         D  RL QI   +L+NA+ F+ +G  V L+ A+     I SV ++G  I 
Sbjct: 733 DTACPSLMINGDHDRLQQIVINLLANALKFTPEGGWVELRLAQGETSVILSVADSGVGIE 792

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788
                 VF+RF        RR  G+G+GL++V + + LHGG V + S+  G  +     +
Sbjct: 793 AGFLPHVFDRFSQADTSMTRRHQGLGIGLALVRNLVELHGGAVRVESAGPGCGSVFTVEL 852

Query: 789 P 789
           P
Sbjct: 853 P 853



 Score = 44.5 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 15/175 (8%), Positives = 54/175 (30%), Gaps = 19/175 (10%)

Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK----LSNHISVFKVLFDSLDFL 205
              +  + R   +       +   +   + + T   ++    L    ++ + +  S   L
Sbjct: 442 GVLVLRDARAHRAREHADRQAYAALDRRVGDRTRALERTMSVLRESTTLLRTIAASTPEL 501

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
           +  + + G I+  N +  +     G+   + +G   +      ++         +     
Sbjct: 502 IVAKSREGRIMMVNPAALQAM---GLSRAQVVGHKEESLFGSSEEMRRILENDRRVIETR 558

Query: 266 VSTLEHGNN------KSYKIVRVLNS------FGEAGIAIDVSKEITVNDQLTHT 308
              +   +       +++ + +          FG  G++ D+++      +L   
Sbjct: 559 RPIVVEESRTTRAGTRTFLVTKSPLRDSQGHVFGLVGVSKDITERKRAQRELEQL 613


>gi|163792404|ref|ZP_02186381.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159182109|gb|EDP66618.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 374

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 154/365 (42%), Gaps = 6/365 (1%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           ++ +   N    +  + ++ +++  A+F P  ++   N  F+ L       +  G     
Sbjct: 1   MEAQNAANYRHNLFIQAMESMTDAFALFDPADKLIFCNSRFKELNPDLAPDIYVGMTFEE 60

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL---ELLSDSVLEYSIIPLPNAQTM 539
           +           D        + +  D  +   G           +L    + L +  T 
Sbjct: 61  MVRRNLDSGRILDAVGKEDQFLKARMDAHRHPSGEAIVSRRKDGQILLLREVRLEDGSTF 120

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           L   + T+  + E  L         A+  K+ F+ +VS+ELR+PL  I+GF++++K+  L
Sbjct: 121 LINSDQTELRQRETDLERAKNEAETANRAKSDFLANVSHELRTPLNAILGFSEIIKSDTL 180

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            S   +   Y   I  S   LL+L+NDILDL  +++G   ++   + L+ L   + + + 
Sbjct: 181 DS--GRYPDYAAAIHKSGQHLLSLINDILDLNAIESGRFVISPERLNLHALTTSIVEMVR 238

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGD 718
               +  IR++        + + DR+ + Q    +LSNA+ FS +G  V L   A   G 
Sbjct: 239 PIAQDAGIRLRTTVPKDFPAVLLDRRAMEQCLLNLLSNAIKFSHRGGAVDLSVGAAPTGG 298

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              +V + G  +  +  K++   F S      +RG GLGL+I +S +    G + I S+ 
Sbjct: 299 VCIAVVDTGVGMASETIKAIGQPFASPGGHVDKRGAGLGLAITKSIVGAMKGELEIQSTP 358

Query: 779 EGVTT 783
              T 
Sbjct: 359 GQGTR 363



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 5/155 (3%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +  +   N +     + + ++T A A+FD    L F N  F EL       +    + +E
Sbjct: 1   MEAQNAANYRHNLFIQAMESMTDAFALFDPADKLIFCNSRFKELNPDLAPDIYVGMTFEE 60

Query: 355 LLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           ++   L S   L        + +     ++            +GQ L +       G T 
Sbjct: 61  MVRRNLDSGRILDAVGKEDQFLKARMDAHRHPSGEAIVSRRKDGQILLLREVRLEDGSTF 120

Query: 414 WMFENLTV----QVDLETKYNTLVKVQGETIDHLS 444
            +  + T     + DLE   N          D L+
Sbjct: 121 LINSDQTELRQRETDLERAKNEAETANRAKSDFLA 155


>gi|260892545|ref|YP_003238642.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260864686|gb|ACX51792.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 467

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 4/257 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +           +  +  R L      L   D  +  F+ +VS+ELR+PLT+I GF   +
Sbjct: 207 DFSVRFHTARQDEIGQLARTLDAMAAQLEAIDRERQEFLAYVSHELRTPLTSIRGFVQGM 266

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +     KQ  Y+  + + +  L  LV+D+L L  + +G    N+    L  +L  V
Sbjct: 267 LDGTIPP--EKQQSYLARVFSETERLRRLVDDLLMLVRLRSGQFTFNWQGTDLRRVLTTV 324

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ ++    E  ++++  + G+L    AD  RL+Q+F  ++ NA+ FS  G  V+++A +
Sbjct: 325 EEVMSPLALEKGVQLEFRTQGELP-VYADEGRLVQVFMNLVDNAIKFSPPGGRVLVEAEK 383

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +G     V + G  IP +    +F+ F S  A      G GLGL+I    +  HGGH+S
Sbjct: 384 TDGLLRVQVTDEGPGIPPEELPRIFDSFYSGTARSRSELGTGLGLAISRLIVEKHGGHIS 443

Query: 774 ISSSDEGVTTINCRIPS 790
           + +  EG  T    +P+
Sbjct: 444 VRNRPEGGCTFTVLLPA 460


>gi|78186193|ref|YP_374236.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78166095|gb|ABB23193.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 967

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 103/507 (20%), Positives = 198/507 (39%), Gaps = 56/507 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
               ++         IL N    I   D    + + NR        D AF         +
Sbjct: 76  EAMDSLRRNENILNSILANSPGTIVSVDSAHSIIYMNRPVP---GFDAAF--------HV 124

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGG-- 411
            + L +  + P Q  ++   + +F+  +      + + LP+G T  V     P  +GG  
Sbjct: 125 GDSLYNHLQGPGQDVFRMTVDRVFASERPPSIESE-FTLPDGGTAEVECRFGPCLQGGEV 183

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              + +  +++ +  +E      +                    G ++  N   R +   
Sbjct: 184 ASVVVIMSDISPRKRMERDLQRSI--------------------GDLERFN---RIMVGR 220

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           E + +     +  ++     +  +    D  + +     DE       L+      +  +
Sbjct: 221 EMHAIELQKELDMLSGRAVAHSCDGVSDDAGSPLSAVGADEDTGPDRNLQ----RTVLLN 276

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +I   N               +        E  R+A+  K  F+ ++S+E+R+P+  +IG
Sbjct: 277 LIDEANQTRNELLEANRRLEESVLRTQLMAEEAREANAAKGQFLANMSHEIRTPMNGVIG 336

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             DLL  +    L+ +Q +YV+ I +S   LL ++NDILD + ++AG ++L +    L +
Sbjct: 337 MADLLLET---DLDQEQQKYVQTIISSGRNLLKIINDILDFSKIEAGRLELEHEEFELAE 393

Query: 650 LLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           LL E+   +  +     + + + I+         D QRL Q+   +L NA+ F+ +G  V
Sbjct: 394 LLEELGCMLGPEAQAAGLELTLSIAPDGPTRLKGDPQRLRQVLVNLLGNAVKFTHEGGEV 453

Query: 709 ILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           IL++             FSV+++G  IP+D   S+F  F         +  G GLGLSI 
Sbjct: 454 ILESTVQKETELYAVVRFSVRDSGIGIPQDRIDSIFEPFSQVDGSSVRRYGGTGLGLSIS 513

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              +   GG +++ S+ +  +T    I
Sbjct: 514 NHLVGRMGGRINVQSTLDEGSTFWFDI 540


>gi|257439704|ref|ZP_05615459.1| putative response regulator receiver domain protein
           [Faecalibacterium prausnitzii A2-165]
 gi|257197844|gb|EEU96128.1| putative response regulator receiver domain protein
           [Faecalibacterium prausnitzii A2-165]
          Length = 1070

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 126/733 (17%), Positives = 279/733 (38%), Gaps = 88/733 (12%)

Query: 122 HHYIKLSKA-TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
                L  A   +L+ EG+             +  +G       ++R+   D + ++   
Sbjct: 83  KDAAFLDNARFRQLQGEGE----------GRILTADGSPV----YVRLYKKDAVDTDGTP 128

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWH--RDQAGDILWAN--ISYKKNTETEGIVFQKA 236
             +   +++       ++ +S+   +W+   ++ G+I+  N   ++++      I+    
Sbjct: 129 IWIMSVQMNWAYENLALVNESIHSALWYFECNENGEIVHVNWSHAFRQILGYHDILDFPN 188

Query: 237 I---------GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY----KIVRVL 283
                      E      + + + +   +   K   E    ++ G  + +    +++R L
Sbjct: 189 KLDSWSNLLHPEDYDRVMQLLLETIADKTNTTKYNVEYRLKMQDGQYQWFRASAEVIRRL 248

Query: 284 NSFGE--AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN--RSFVELW 339
           +      AGI  ++  E     Q               A    N    + N  ++  + +
Sbjct: 249 DGSANRIAGIISNIDAEKRSRMQAQRAAAFHR------AFTSANLCEYYVNLEKNTFDTF 302

Query: 340 EIDLAFL---ATNPSNDELLEFLRSANKLPEQL----NWKTWKENIFSVYKSSETH--KD 390
           +++ + +     N + D L+ F      + E      N+   +  I    K  ET   ++
Sbjct: 303 KVEPSLMTAFEQNYTWDGLVRFFVDNYVVEEDKKTVTNFYN-RAYITEKLKGLETELRQE 361

Query: 391 TWHLPNGQTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              + +G+   V               +    ++T     ET     +     ++D L +
Sbjct: 362 CRIVLDGEERWVSNVVMRGEIEDSEYAMIFLRDITESK-AETARRMQMASDNASMDLLIQ 420

Query: 446 GVA-VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            +  +        L N  +R      +   +P     +     +  Y   +      A+ 
Sbjct: 421 SMVRLLDRFVVCDLENDRYRFYNLQGDMIYAPTGAYHDFVEQVAVRYKTLEPLAAMDALF 480

Query: 505 TSFDDERKSLQGTLEL-------LSDSVLEY-SIIPLPNAQT-----MLTFVNVTDSVRA 551
            S ++ RK+LQG  ++       + ++  +  S IPL    T     +L  ++V+   +A
Sbjct: 481 -SPENIRKNLQGENDIYKFEYCSIDENTYKIGSFIPLEWDGTKLVKALLASMDVSQEKKA 539

Query: 552 E----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           E    +AL E   A   A   K  F+ ++S+++R+P+  I+G T +           K  
Sbjct: 540 EIESHKALKEAYRAAENASRAKTEFLSNMSHDIRTPMNAIVGLTAI--AGANIESQDKVV 597

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  I+ SS  LL L+N++LD+A +++G M L      L +L++ +       + E++ 
Sbjct: 598 ECLGKITKSSRHLLGLINEVLDMARIESGRMSLAEEDFSLPELVDNLLTLTKPVIDEHHH 657

Query: 668 RIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFI 720
           +++V  +  +  +   D  R+ Q+F  ++SNA+ ++  G  + L            G + 
Sbjct: 658 QLEVHIEHIEHEAVCGDSLRIQQVFVNLMSNAVKYTPDGGNITLTIKEKPNGFSELGCYE 717

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           FS+++NG  +  +  K +F  F         +  G GLG++I  + +NL  G + + S+ 
Sbjct: 718 FSIEDNGIGMTPEFQKIMFEPFSRADDHRTTKVQGTGLGMAIARNIVNLMNGDIQVESAP 777

Query: 779 EGVTTINCRIPSK 791
              T I   +  K
Sbjct: 778 NKGTKITVTVYLK 790


>gi|288941471|ref|YP_003443711.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896843|gb|ADC62679.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 904

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 93/523 (17%), Positives = 187/523 (35%), Gaps = 61/523 (11%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                A + ID++ E  V   L    E       A  + D  + + F  R+         
Sbjct: 256 GDDLAAVVGIDITLERIVKGILNLQVE---QSGFAFLMSDGGQAIAFPERA--------A 304

Query: 344 AFLATNPSN-DELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
            FL  + S   E  E     + L E  +  +++  E +        T+ D     +GQ  
Sbjct: 305 GFLEFHGSFQGEFKENEAFKHSLTEIRDPAFRSIIERMRQGASDLTTYTDP---KDGQDY 361

Query: 401 HVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
                  P  G      + + E +   V    K      +    ++  ++ +        
Sbjct: 362 FFAYHPIPVTGWSVGIVVPVREVIAPAVATSEKIEQSRALTDAELNARADALVQT----- 416

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
                  F  +       L     I       +         +L   I     DE + L 
Sbjct: 417 FLWL--LFGIMATLIPVALVFARSISRPIQALAEGSRRVGAGELDHRIQVDSGDEIQDLA 474

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
            T   +++                       D       +   N+ L++ D++K+ F+  
Sbjct: 475 LTFNQMAE-----------------------DLKNKIDEIETANQELQQLDQLKSKFISM 511

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            S+ELR+PL  I G+ DL++  + G +++ Q   ++ +S ++T L  +V+++LD++ ++ 
Sbjct: 512 ASHELRTPLIAIQGYVDLIREGRGGEISAAQRTMLDTVSRNATRLARIVSELLDISRIEE 571

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             + L    + L  +++E+ +     +      + +     L     D  R+ Q+   +L
Sbjct: 572 NKLVLERVPVSLGQIVSEITEEQQPYLESRRHALTLEIADALPRVDGDPDRISQVVINLL 631

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-----VSNAHRGQ 750
            NA+ ++  G  + ++   +       V + G  I  +    +F RF     V+    G+
Sbjct: 632 GNAIKYTPDGGRIHIRVYPEPDRVHLEVTDTGIGIKPEDIGKLFKRFSTLGDVTKHRTGK 691

Query: 751 R----RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 G GLGLSIV+  +  H G + + S     +T + + P
Sbjct: 692 NEFLAGGTGLGLSIVQGIVQAHAGKIWVDSEYGRGSTFHVQWP 734


>gi|302876207|ref|YP_003844840.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307686939|ref|ZP_07629385.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302579064|gb|ADL53076.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 547

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 179/454 (39%), Gaps = 31/454 (6%)

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW-----------MF 416
             +   ++ ++  + K+ +     + + N QT   I     +G   +           + 
Sbjct: 63  PSDRPAFEASLCEIVKNGDDFDVEYRIVN-QTDRTIRWLKAKGKLYYDKYGALEKAVGII 121

Query: 417 ENLTVQVDLETKYNTL-------VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           ++++   + E +Y  L              ID + +       DG  +  N AF      
Sbjct: 122 QDISELKESEERYKNLYIKFQQKQAFLTSLIDSIPDFFFYKDIDGVYQGCNKAFEVFAGI 181

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +E +L     +       +  +   D   +        ++  K   G + L+      Y 
Sbjct: 182 KEEKLIGKRDLEVFDKETAESFRGRDLEVIRQNKHLRNEEWIKYPDGKVLLVDTLKTPYY 241

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEA------LRKADEIKNSFVQHVSYELRSP 583
                    +    ++T+  + E      +E       L + D IK  F  ++S+ELR+P
Sbjct: 242 DSQGNIMGLIGISRDITEKYKQEELQKSIDEERRRISELEEYDRIKTDFFANISHELRTP 301

Query: 584 LTNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
              I     +    LK        ++   Y + +  +   LL L+N+++D+  +D   ++
Sbjct: 302 TNVIFSALQVQELKLKKYLSKESCTEMYGYTKMMKQNCYRLLRLINNLIDITKIDTMYVE 361

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +N   I + +L+  +  S+A  + +  + +   ++ +      D +++ +I   +LSNA+
Sbjct: 362 INEVNINIINLIENITMSVADYIEDKGLSLIFDTEVEEKVIACDPEKIERIMLNLLSNAV 421

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
            F+  G  +++       +    VK+ G  IP++   S+F RFV           G G+G
Sbjct: 422 KFTPMGGNIMVNIEDATENVCIRVKDTGRGIPKEKLNSIFERFVQVDKSFTRDHEGSGIG 481

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LS+V+S + LHGG +S+ SS+   T     IP K
Sbjct: 482 LSLVKSLVELHGGTISVKSSEGYGTEFIIYIPCK 515


>gi|6166489|gb|AAF04854.1|AF197912_1 histidine protein kinase homolog GacS [Azotobacter vinelandii]
          Length = 905

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 150/326 (46%), Gaps = 16/326 (4%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L  G  I +      +  ++     L   + +    E   L   +  +++ V++++   +
Sbjct: 175 LRVGRSISDPLRRIQQGVSQLRDGHLETRLPSLRSHELDELAAGINRMAE-VMQHAQEEM 233

Query: 534 PNAQTMLTFVNVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            N+    T     +    E     L        +A  IK+ F+ ++S+E+R+PL  IIGF
Sbjct: 234 QNSIDQATEDVRQNLETIEIQNIELDMVRREALEASRIKSEFLANMSHEIRTPLNGIIGF 293

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+LL+      L  +Q  Y+  I  S+  LL+++N+ILD + ++AG + L ++   L +L
Sbjct: 294 TNLLQK---CELTPRQHDYLNTIQKSADSLLDIINEILDFSKIEAGKLVLEHTPFNLREL 350

Query: 651 LNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + +    +A   H  ++ +  +I      +   D QRL Q+ + ++SNA+ F+++G T+ 
Sbjct: 351 IQDTLTILAPAAHAKHLELVSLIYRDTPLALNGDPQRLRQVLTNLISNAIKFTNEG-TIA 409

Query: 710 LKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
           ++A  ++          SV + G  + ++   ++F  F    +    Q  G GLGL I +
Sbjct: 410 VRAMVEDIGEEFAQLRISVHDTGIGLSQEDLNALFQAFSQADNSLTRQAGGTGLGLVISK 469

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
             I   GG + ++S     +    R+
Sbjct: 470 RLIEQMGGEIGVNSVPGEGSEFWIRL 495


>gi|115523889|ref|YP_780800.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115517836|gb|ABJ05820.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 615

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 170/383 (44%), Gaps = 25/383 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +Y  L +       ++S+ ++    +G ++  +PA  +L  T  +RL        +  
Sbjct: 203 EDRYRLLAR-------NMSDVISCHRRNGAVQFISPAAEALLGTPSSRLLGHGLFDRVHV 255

Query: 486 TCSRYYNESDGWDLFAAIITS--FDDERKSLQGTLELLSDS---VLEYSIIPL------- 533
                +  +         + S  F   R+  +G     + +    LE    PL       
Sbjct: 256 VDRPAFLTALSDAGRGGEVRSVEFRVRRELPRGERSRTAAADFLWLEMRCRPLEQTVGGH 315

Query: 534 ---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              P+ + +    +VTD  + E AL +      +AD  ++ F+  VS+ELR+PL  IIGF
Sbjct: 316 VAAPDTEVVAVMRDVTDRKQQELALEQARAEAARADASRSRFLATVSHELRTPLNAIIGF 375

Query: 591 TDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           ++++ +   L     ++ +Y + I+ S   LL++VN ILD++ +D+G  ++         
Sbjct: 376 SEMIVQEQALMISAERRREYAQLINDSGQHLLSVVNGILDMSKMDSGNFEILPEPFAPRP 435

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            L      +A K  ++ I +   +   L     D +   QI   ++SNA+ F+ +G TV 
Sbjct: 436 ALLNCCNLLALKARDSGIDLVTRAPDDLPEVNGDPRAFKQIVLNLVSNAIKFTERGGTVT 495

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           + AA +       V + G  I  D  + + + F         +  G GLGLSIV++ + L
Sbjct: 496 VSAAVEGAHLALRVVDTGVGIAADDLERIGDPFFQAGKTYQRRHEGTGLGLSIVKTLVAL 555

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           HGG ++++S  +  TT+   +P 
Sbjct: 556 HGGELTVASQLDKGTTVTAMLPL 578


>gi|114764257|ref|ZP_01443485.1| signal transduction histidine kinase [Pelagibaca bermudensis
           HTCC2601]
 gi|114543205|gb|EAU46222.1| signal transduction histidine kinase [Roseovarius sp. HTCC2601]
          Length = 738

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/545 (19%), Positives = 204/545 (37%), Gaps = 41/545 (7%)

Query: 275 KSYKIVRVLN--SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           ++ ++ R LN      A +A    +  T    L    E    ++   A+FD +  L   N
Sbjct: 55  RTLELERTLNLLHDSNAQLAQAHEETETARRNLADAIET---ISEGFALFDGDDVLVMCN 111

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSAN--KLPEQLNWKTWKENIFSVYKSSETHKD 390
             F   +   +  L    S +  +  +  +    LPE L+   W  +    +       +
Sbjct: 112 SRFCRDFRDTVRDLRPGLSFEGYVRHVSRSRHLSLPEGLSPDAWAADRMRKHTDRRVMFN 171

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN-----TLVKVQGETIDHLSE 445
             H  + + L V       GGT+ +  ++T  + LE +          ++   T+DHL +
Sbjct: 172 VRHGQD-RWLQVSEHRTANGGTVILQTDVTDIIRLERQERLKLKDKQTRMIRATLDHLDQ 230

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAI 503
           GV +F     +   N    +L      RL  G     +     +   +++    DLF + 
Sbjct: 231 GVCIFDEGAHLVAWNEKIGTLMNLPARRLHLGASFDGLMEQVEQNFRFSQESDRDLFRS- 289

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            T     R  +   L      VL +    +P+   + +  +VT    A R LTE NE L 
Sbjct: 290 WTERGGRRGPISFELSRDGGIVLRFFGRGMPDGGFLFSCTDVTAEREAARRLTEVNEMLE 349

Query: 564 KA------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +                   +  K+ FV   S++L  PL+    F   L      + +  
Sbjct: 350 QRVMERTLELEDALSAAERANASKSRFVAAASHDLLQPLSAAKLFISSLSEKSADAGDKA 409

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
                E    S+     L++ +LD++ +++  +K +   + L ++ + ++  +       
Sbjct: 410 VLDKAESALTSAE---QLIDALLDISKLESDGLKFDIRPVALREIFSRLRDEMEVLAARK 466

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +++++I      +   D   L ++   +++NA+ ++  G  V++   R  G     V +
Sbjct: 467 GLKLRMIDSD--LTVETDPAYLRRVVQNLVANAIRYTETG-RVVIGVRRRGGTARIEVWD 523

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I E+   ++F  F     R     G+GLGL+IVE      G  + + S     +  
Sbjct: 524 TGPGIAEEDQSAIFEEFRRLDTRASSNDGLGLGLAIVERACARLGHPLGLWSEPGRGSCF 583

Query: 785 NCRIP 789
              +P
Sbjct: 584 MVSLP 588



 Score = 86.5 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 92/291 (31%), Gaps = 22/291 (7%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +L+ ++   A+     ++            +++       D    ++  N  + ++   
Sbjct: 61  RTLNLLHDSNAQLAQAHEETETARRNLADAIETISEGFALFDGDDVLVMCNSRFCRDFRD 120

Query: 229 EGIVFQKA---------IGESRKL-FKEEIKKRMISSSALEKNFCETVS-TLEHGNNKSY 277
                +           +  SR L   E +     ++  + K+    V   + HG ++  
Sbjct: 121 TVRDLRPGLSFEGYVRHVSRSRHLSLPEGLSPDAWAADRMRKHTDRRVMFNVRHGQDRWL 180

Query: 278 KIVR-VLNSFGEAGIAIDVSKEITVNDQLTH---------TYEILHNLTVAIAIFDQNRY 327
           ++      + G   +  DV+  I +  Q                L +L   + IFD+  +
Sbjct: 181 QVSEHRTANGGTVILQTDVTDIIRLERQERLKLKDKQTRMIRATLDHLDQGVCIFDEGAH 240

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           L   N     L  +    L    S D L+E +    +  ++ +   ++       +    
Sbjct: 241 LVAWNEKIGTLMNLPARRLHLGASFDGLMEQVEQNFRFSQESDRDLFRSWTERGGRRG-P 299

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
                    G  L       P GG ++   ++T + +   +   + ++  +
Sbjct: 300 ISFELSRDGGIVLRFFGRGMPDGGFLFSCTDVTAEREAARRLTEVNEMLEQ 350


>gi|237510628|ref|ZP_04523343.1| sensory box histidine kinase [Burkholderia pseudomallei MSHR346]
 gi|235002833|gb|EEP52257.1| sensory box histidine kinase [Burkholderia pseudomallei MSHR346]
          Length = 723

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 200/508 (39%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 217 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 276

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L+    +  ++ +       +  +     +S      +   +G  L V   + P    
Sbjct: 277 RVLMFRHATTQRVIDNPA----RVAVERRRTASLPAHTRFVGRSGGELPVDGNAAPTFDA 332

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 333 NGKLVGAVLIVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAEK 385

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F +       E + L G     S+  
Sbjct: 386 LFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEFP 444

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 445 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 504

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 505 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 562

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F 
Sbjct: 563 RPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKFR 619

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 620 GKDRVARIHLEAHPRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 679

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 680 CKRIVEHHGGRIFVESEPGQGTTFSFTL 707


>gi|123966735|ref|YP_001011816.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123201101|gb|ABM72709.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 689

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/393 (22%), Positives = 162/393 (41%), Gaps = 46/393 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  + L++ E   L     +  I   
Sbjct: 290 EELKAAQVKQQSLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKYLLNEIPEI 349

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            S   +     +         DD R SL     TL ++  SVL+ + I L          
Sbjct: 350 LSNDLHT--NIESILNREKESDDLRCSLGEPARTLRIVLQSVLDTNKIELKGIAV----- 402

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  +N F+ +VS+ELR+PL NI  + + L   K    N
Sbjct: 403 -TIQDLTREVEL----------NAAQNRFISNVSHELRTPLFNIKSYVETLYDLKDQLSN 451

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G + +    + +   + +  ++      
Sbjct: 452 EEQLEFLGIANSETDRLTRLVNDVLDLSRLESGKI-IQLEPMEIKPAIEQTLRNYRLNAS 510

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------- 714
           E N+ +    +  +   + +   LLQ+F  +L N + FS K ST+ ++A           
Sbjct: 511 EKNVALAHDIEENIPLILGNFDLLLQVFDNLLGNGLKFSPKNSTLKIRAYTWPDSCPAFP 570

Query: 715 --DNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLS 759
             DN +                + + GS I +   + +F+RF    +     +G GLGLS
Sbjct: 571 PNDNNEAPQCELVSPLPKVRIEIADTGSGISQPDQEKIFDRFYRVENAVHTEQGTGLGLS 630

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           IV   I  HGG + ++S     TT    +P ++
Sbjct: 631 IVRGIIEKHGGEIRMASELGIGTTFWFDLPLEQ 663



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D    +   N +   L+  +  FL      +
Sbjct: 285 DEANIEELKAAQVKQQSLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKYLLN 344

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           E+ E L +        +  T  E+I +  K S+  + +   P  +TL +++ S       
Sbjct: 345 EIPEILSN--------DLHTNIESILNREKESDDLRCSLGEP-ARTLRIVLQSVLDTNKI 395

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    N  +
Sbjct: 396 ELKGIAVTIQDLTREVELNAAQNRFI 421


>gi|77361536|ref|YP_341111.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876447|emb|CAI87669.1| putative Sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1256

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 106/507 (20%), Positives = 199/507 (39%), Gaps = 42/507 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S        L     +L+N+   I     +      N++F        A L      +E
Sbjct: 405 TSSYEAKERHLALLNTVLNNVPDFIYFKSIDGLFLGCNKAFETFIGKKQAELVGKLIENE 464

Query: 355 LLEFLRSANKLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
             +  +  +KL +Q+  N    ++ I S  +S       ++    Q L          G 
Sbjct: 465 SSDS-KKISKLEQQVLHNRTQIQQRIDSAERSYLLTIAPFYNEQQQLL----------GV 513

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +  ++T Q                 I+  + GV +   D  I  +N A R L    E 
Sbjct: 514 MGIGRDITEQQQTLHALKESETKFRSAIEFAANGVVLLSLDHTILQANKAARELS--SEQ 571

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL---ELLSDSVLEYS 529
            L  G       A  +R ++     ++ A +    +++++    TL   EL     L  S
Sbjct: 572 NLLAG-------APLNRVFSNPQWQEIKATLAQLLNNKKRVYHLTLAHGELADWLQLSVS 624

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           ++   NA+ +   +++ D       LT+      +A   K+ F+ ++S+E+R+PL  + G
Sbjct: 625 LVWNENAEPLYYVIHIQDIS----ILTKAKHDAERATLAKSRFIANLSHEIRTPLNAVFG 680

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             D+L       L  KQ +       ++  LL ++N +LD A V++   +L  +   + +
Sbjct: 681 LLDMLIEQ---GLTPKQLEQTAQAKHAAHSLLLMLNRMLDFARVESVAAQLKLAPFSIVE 737

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           L++  +   A       I + +  D  +  + + D  RL Q+   +L+NA+ F+  GS +
Sbjct: 738 LVDICESLTAPLCENKGIELIIDIDPLISPNLICDSIRLQQVLGNLLTNAVKFTKTGS-I 796

Query: 709 ILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
            LK         +     F V + G  I +   + +F+ F        R   GVGLGL+I
Sbjct: 797 TLKMDLLPSDTSEQQHICFKVIDTGVGIDKADQRRLFDAFTQGDESSTRTHHGVGLGLAI 856

Query: 761 VESFINLHGGHVSISSSDEGVTTINCR 787
           V+S + L GG ++++S           
Sbjct: 857 VKSAVLLMGGEIALNSEKGEGCEFYFS 883


>gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 670

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 186/494 (37%), Gaps = 44/494 (8%)

Query: 338 LWEIDLAFLATNPSNDE----LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           LW I++               LL      +  PE   ++ W   +   Y+++        
Sbjct: 25  LWAIEVDEENGKHRMTANETMLLLLGLETHPSPEDC-FRHWYGRVDEAYRAAVDECVGKM 83

Query: 394 LPNGQTLHVIV-TSNPRGGTIWM---------------------FENLTVQVDLETKYNT 431
           L  GQ   V     +P  G I++                      ++++    +  +   
Sbjct: 84  LSTGQRYEVQYPWLHPVCGRIFVRCGGKLLPGRSKNGLLRLKGYHQDVSELESMRERLRE 143

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKL-SNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            +            GV       RI   +N  F   +    + +      R + +  +  
Sbjct: 144 NLSRFETACRIGRIGVFECTRGSRILFSANDIFFEQFGIPADMVCFSA-FRGLWSRIAPG 202

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA---QTMLTFVNVTD 547
             +     L  +       ER  ++           ++      +    + +    ++T+
Sbjct: 203 CRKRVLEALRRSSWKPGRCERFEIELLDPEKGSRWFDFESEFSRDGDAVRAVGYVADITE 262

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E +L    EA   A+  K+SF+ ++S+ELR+P+  IIG + L   +    L ++Q 
Sbjct: 263 HKQHEASLRMAAEAAEAANRAKSSFLANMSHELRTPMNAIIGLSYLALKT---DLTTQQY 319

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+  IS SST LL ++NDILDL  V+A  ++L  +   L   L  +   +  +     +
Sbjct: 320 EYISRISESSTALLGILNDILDLTKVEANKLELARTPFNLKKELGILAAVVLPEAEGKGL 379

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFS 722
              +     +    + D  R+ Q+   + +NA+ F+ +GS      ++ +        F 
Sbjct: 380 EFSLEIAPDVPLLLMGDALRVRQVLLNLCNNAVKFTDEGSVSLRVRVVDSTNTRVRLEFV 439

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IPE     +F+ F+       RR  G GLGL+I +  + L GG +++ S    
Sbjct: 440 VRDCGIGIPESEIGRIFSPFMQVDESATRRFGGTGLGLAISKRLVELMGGTLTVGSRVNK 499

Query: 781 VTTINCRI--PSKE 792
            +T    +  P  E
Sbjct: 500 GSTFRVELAFPLAE 513


>gi|309791212|ref|ZP_07685744.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226774|gb|EFO80470.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 545

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/506 (18%), Positives = 191/506 (37%), Gaps = 22/506 (4%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
            +   V  Q   + + +  ++  I  +   Q  YL + N      ++ D +         
Sbjct: 36  ERATFVEQQTIPSLDTIARMSSVINRYQVGQLEYLIYSNP-----YDKDRSRQKMGDLEA 90

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP------NGQTLHVIVTSN 407
           E+  +      L      +   E +   ++   T      +P       G         N
Sbjct: 91  EMQRYFADYQPLITSDEERNRFEAVLLAWQRVVTANYERFIPAVALANTGSVQPFYSRMN 150

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           P  G + +  +           + L +V+   +    + V +      I +S      L 
Sbjct: 151 PLYGDLSVAMDALSVEGQAQATSALEEVRAAYLSA--QTVIIGDTGLTILISAVIGLVLS 208

Query: 468 KTEENRLSPGTHI-RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                R+   T     +AA       E    D    +  SF+    SL+    +L     
Sbjct: 209 GRIAMRIGRLTSATAQVAAGDLDRQVEVVSRDELGTLAQSFNQMVMSLREQRGILEQRNT 268

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E     +   Q      ++    +AE        A   A + K+ F+ ++S+ELR+PL  
Sbjct: 269 ELHTSLMRQEQL---TADLVRGKQAEEEAQRAQAAAEAASQAKSMFLANMSHELRTPLNA 325

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G+  LLK     +    Q ++++ I  +   L +L++++LD + ++ G ++L    + 
Sbjct: 326 ILGYAQLLKMGVANNDPVSQQEFLDSILGAGRHLTSLISNVLDFSKIEQGKIELYMGPVD 385

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  L+ EV   +   + + +  +++  + ++G+ + D  +L QI   +LSNA  F+  G 
Sbjct: 386 VEPLIREVADIVHPLVKQQHNELRISIEPEIGTMLTDGPKLRQILVNLLSNAAKFTEAG- 444

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           T+ L          F+V + G  I  +    +F  F        RR  G GLGL++    
Sbjct: 445 TISLHVCAAAEMIEFAVIDTGIGISAEHLGKLFQPFSQVDSSVTRRVDGTGLGLALSRQL 504

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
            +  GG +S+ S+    +T    +P+
Sbjct: 505 CHAMGGEISVESAVGQGSTFRVVLPA 530


>gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 760

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 9/253 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +    E AL +  +A   A+  K+ F+ ++S+E+R+P+  +IG  +L+  +    L+ 
Sbjct: 216 FEERDEREFALEDARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET---DLDD 272

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q  Y E IS S + LL ++NDIL+ + ++AG M+L+ +   L   + +V   ++ K  E
Sbjct: 273 DQKMYAETISKSGSALLTIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLLSPKAAE 332

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFI 720
            N+ + +  D  L  F   D  R+ QI + I  NA+ F+S G   + +      G  D  
Sbjct: 333 KNVEVTLRYDPGLPEFFEGDVGRIRQILTNIAGNAVKFTSAGYVYIEVSGHTAGGYSDLR 392

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SVK+ G+ IP D   S+FN F  V  A      G GLGL+I    + + GG VS++S  
Sbjct: 393 ISVKDTGTGIPADQLNSIFNAFEQVDGAATRNFEGTGLGLAISTRLLGMMGGTVSVTSVL 452

Query: 779 EGVTTINCRIPSK 791
              +T    +P K
Sbjct: 453 GEGSTFTVELPLK 465


>gi|256838460|ref|ZP_05543970.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739379|gb|EEU52703.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 1045

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 222/518 (42%), Gaps = 59/518 (11%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE---LLEFLRS 361
           L+   ++ +N+ +        + L        E  +ID+  L  N + +E     +F+ +
Sbjct: 411 LSRYRDLFNNMPLPYI----RQRLI------REGTQIDVQVLDVNHAFEEKIAPKDFVVN 460

Query: 362 ANKLPEQLN-----WKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRGGTI-W 414
                E  N     +      + +V +S ++    ++  P G    +I+        +  
Sbjct: 461 KRG-KEIANLIGGSYPLLLSAVPTVLESGKSFTYEYYFEPTGLYYTIIIMPTSEENVVDA 519

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENR 473
            F ++T     +T    +       ++        +   +G+I              E++
Sbjct: 520 FFIDITDIHKFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIY------------ESK 567

Query: 474 LSPGTHIRNIA----ATCSRYYNESDGWDLFAAIITSFDD------ERKSLQGTLELL-- 521
           + PG +I            + Y         A +  +FDD      ++   +  LE L  
Sbjct: 568 VHPGDNIETAEVHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIP 627

Query: 522 ---SDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                   E  ++   +A       + + +++T+  + E  L    +   +++++K++F+
Sbjct: 628 GEDRHEWEEIQVMVEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFL 687

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+++L ++    L  K  ++ + I  ++++LL L+NDILDL+ +
Sbjct: 688 ANMSHEIRTPLNAIVGFSNILAST--DDLEDK-KEFADIIENNNSLLLQLINDILDLSKI 744

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG ++  Y  + +N +L +++QS   K    +++I      +      DR RL Q+   
Sbjct: 745 EAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMIN 804

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +L+NAM F+  GS +     +D+    F V++ G  IPE+  K +F RFV      Q  G
Sbjct: 805 LLNNAMKFTQAGSILFGYKLKDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTFAQ--G 862

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGLSI E  +    G + + S +   +     +P +
Sbjct: 863 TGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLPFQ 900


>gi|167723946|ref|ZP_02407182.1| two-component sensor kinase protein [Burkholderia pseudomallei
           DM98]
          Length = 723

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/509 (17%), Positives = 196/509 (38%), Gaps = 31/509 (6%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 217 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 276

Query: 353 DEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--- 408
             L      +   +         +    S+          +   +G  L V   + P   
Sbjct: 277 QVLTFRHAATQRVIDNPARVAVERRRTASL-----PPHTRFVGRSGGELPVDGNAAPTFD 331

Query: 409 ----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G + +  +++ +           +     ++     + + G DGRI L N    
Sbjct: 332 ANGKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAE 384

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+      +  G  I  +     R  + +     F +       E + L G     S+ 
Sbjct: 385 KLFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEF 443

Query: 525 VLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDA 561

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F
Sbjct: 562 RRPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKF 618

Query: 702 SSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL+
Sbjct: 619 RGKDRVARIHLEAHPRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLA 678

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +  +  HGG + + S     TT +  +
Sbjct: 679 LCKRIVEHHGGRIFVESEPGQGTTFSFTL 707


>gi|298675082|ref|YP_003726832.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288070|gb|ADI74036.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 677

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 111/519 (21%), Positives = 208/519 (40%), Gaps = 40/519 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   +  +     + L      I + D N+ ++  N    E+   D   L      +  
Sbjct: 173 ERTKQLEIERDKAQKYLDISGAIIIVLDNNQRIELINNKGCEVLGYDKTELIGKNMYENF 232

Query: 356 --LEFLRSANKLPEQLNWKTWKENIFS---VYKSSETHKDTWHLP-----NGQTLHVIVT 405
              E++   N +   L       N F    + K+ E    +W+       NG  +     
Sbjct: 233 VPREYMDKVNNISNNLIQGHEDNNNFINPIIGKNGEERIISWYNSVLKDDNGSII----- 287

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                GT+    ++T  ++L+           +  +    G+     +G+I   N     
Sbjct: 288 -----GTLSSGIDVTELINLKNSLQESKNQYKQLFEESPVGLLKCKSNGKIVDVNKRILE 342

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +  +     +   ++       +  ++E          I    +ERK +           
Sbjct: 343 ILNSPSKEETLKFNLLESPHIKNSGFDEELRKAFSNNRI--VKNERKYISF---WGRKRW 397

Query: 526 LEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKAD-------EIKNSFV 573
           + Y I+PL + +      ++   ++T     E  L +  + L+KA+       E+KN F+
Sbjct: 398 IYYKIVPLGDEEGNVNESIIALDDITQRKETETQLLKYYDDLQKANRELKSLSEMKNRFI 457

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+P+TNI G+++LL   KLG LN KQS+ V  IS S   L  L++ ++ +  +
Sbjct: 458 SNVSHELRTPITNIKGYSNLLNNKKLGELNDKQSKAVSVISQSCERLRWLIDTLIHINIL 517

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++     +   I L+ LLN V    +    +  + +    D  L    A+ + L Q+F  
Sbjct: 518 ESDNGIQHTQKISLSSLLNNVVSENSVYFFDKGLNLTTNIDSNLPLVDANPEYLEQVFVH 577

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           IL NA  F+  G  V + A  D+G+    V +NG  I E+   ++F+ F       +RR 
Sbjct: 578 ILDNACKFTPSGGKVDVHAF-DDGNLHIIVSDNGIGIDEESANNIFDLFYQKDDSSKRRY 636

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G G G+   +  I  H G++ + S  +  T ++  +P 
Sbjct: 637 SGTGAGMYFCKKIIEKHHGNIWVESKIKEGTDVHIILPK 675



 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 34/188 (18%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK-ENIF 379
           I D N  +  +N++    + +    +A      E++   +          +K+ K E++ 
Sbjct: 58  IQDTNHNIIKYNKAGYSFFNLKPEEVAGKKCY-EIIGRNKPCKICATSKVYKSKKPEHVV 116

Query: 380 SVYKSSETHKDTWHLP----NGQTLHVIVTSNPRGGTIWMFENLTVQVDLE----TKYNT 431
              +  +   D    P    NG   +V+              ++T +  LE     + N 
Sbjct: 117 KYIEEMDIWFDVRAYPIFDNNGNLTNVMEH----------LRDITQEKKLENKIKDQRNN 166

Query: 432 LVKV--------------QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           L K+                + +D     + V   + RI+L N     +   ++  L   
Sbjct: 167 LEKIVYERTKQLEIERDKAQKYLDISGAIIIVLDNNQRIELINNKGCEVLGYDKTELIGK 226

Query: 478 THIRNIAA 485
               N   
Sbjct: 227 NMYENFVP 234


>gi|108761548|ref|YP_634819.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|18030059|gb|AAL56598.1|AF449411_19 histidine kinase-like protein [Myxococcus xanthus DK 1622]
 gi|108465428|gb|ABF90613.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 502

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 10/257 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             D       L + N  L++ D +K++F+  VS+ELR+PL +IIG++++L     G+LN 
Sbjct: 222 HRDLEANNARLAQANIRLKELDRLKSTFLGTVSHELRTPLASIIGYSEMLAEGLAGALNP 281

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  YV  I      LLNL++ ILDL+ ++AG ++L    + L  ++     S+A +   
Sbjct: 282 EQLLYVRTIVEKGESLLNLISSILDLSQIEAGRLRLVMGPVDLGSVIQTAVSSVAPQAQR 341

Query: 665 NNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
             + ++V           AD  +L Q+   +L+NA+ F+S G  V +  +          
Sbjct: 342 KGVELEVRLPPLPQPRLAADADKLRQVVVNLLANAVKFTSSGGRVSVVMSEATAQHELAA 401

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
             +   V++ G  I ED  +++F  F        R   G GLGL+IV+S +  HGG VS+
Sbjct: 402 PGYRVCVEDTGMGIREDQFENIFQSFYQVDGSSTREHGGAGLGLAIVKSLVEGHGGRVSV 461

Query: 775 SSSDEGVTTINCRIPSK 791
            S     +     +P +
Sbjct: 462 ESEFGRGSRFTVVLPLQ 478


>gi|86145206|ref|ZP_01063537.1| putative histidine kinase [Vibrio sp. MED222]
 gi|85836783|gb|EAQ54903.1| putative histidine kinase [Vibrio sp. MED222]
          Length = 1067

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D+ RA+    E  +   +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L   Q
Sbjct: 381 DAERAKEDAEEAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILSDT---PLTPTQ 437

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV+ I  SS +LL+L+NDILD + +++G++ ++  +  + + + ++   +A K  E  
Sbjct: 438 RDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQK 497

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIF 721
           I + V       +  + D  RL QI    +SNA+ F+++G        L  A +N    F
Sbjct: 498 ISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRF 557

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  I +   K +F  F        R   G GLGL+I    + L GG + + S   
Sbjct: 558 SVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKG 617

Query: 780 GVTTINCRI 788
             +     +
Sbjct: 618 KGSCFYFDL 626


>gi|218676627|ref|YP_002395446.1| putative histidine kinase [Vibrio splendidus LGP32]
 gi|218324895|emb|CAV26666.1| putative histidine kinase [Vibrio splendidus LGP32]
          Length = 1067

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D+ RA+    E  +   +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L   Q
Sbjct: 381 DAERAKEDAEEAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILSDT---PLTPTQ 437

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV+ I  SS +LL+L+NDILD + +++G++ ++  +  + + + ++   +A K  E  
Sbjct: 438 RDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQK 497

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIF 721
           I + V       +  + D  RL QI    +SNA+ F+++G        L  A +N    F
Sbjct: 498 ISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRF 557

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  I +   K +F  F        R   G GLGL+I    + L GG + + S   
Sbjct: 558 SVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKG 617

Query: 780 GVTTINCRI 788
             +     +
Sbjct: 618 KGSCFYFDL 626


>gi|255009587|ref|ZP_05281713.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1023

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 112/647 (17%), Positives = 255/647 (39%), Gaps = 74/647 (11%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKNTETEGIVFQKAIGE 239
                +L     + + + +S+   +  +D       ++ N   +++    G    + +  
Sbjct: 254 RKNNTELQRRKLLQENILNSIPLPIHIKDVEDDFRYVFCN---EESMRMFGTYEGETVS- 309

Query: 240 SRKLFKEEIKKRMISSS----ALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAI 293
              +   E  +RM  +        K +      +   + +SY   + + +   G   + +
Sbjct: 310 --DILDREQAERMQKTDLEVFTTGKPYFGVERIILK-DGRSYDTIVRKNIIYDGSKRLLL 366

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           ++  +  + + L    ++L +++           ++  N ++   +E     ++     D
Sbjct: 367 NIRWDQKLQNDLERRAKVL-SIS-----------MEVMN-AYTWFYEPSKQRVSFGEGFD 413

Query: 354 ELLEFLRSANKLP------EQLNWKTWKENIFSVYKSSETHKDTWHLPN----G-----Q 398
           ++       N            + + +   + +V K      D  +  +    G     Q
Sbjct: 414 KIGRNALDINTFEKFAECVHPDDRRQFIGTMDAVLKQDSGEWDIEYRADLRGNGNYEWWQ 473

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDL-----------ETKYNTLVKVQGETIDHLSEGV 447
           T  V+ TS            +T+ ++            + K   L++     +++ + G+
Sbjct: 474 TRGVLETSILNDTPYQYVSGMTISIESYKQTELTLLKNKEKLKRLIRQNELVLNNTNSGL 533

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           A    D  ++  N +  S   + E         ++     +          +   ++ S 
Sbjct: 534 AYITKDYVVQWENVSVCSSSLSFEAYKRGECCYKS-----AHNRTSPCENCVLGKVLASR 588

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEAL 562
             E+          ++ ++E    P+          ++   ++TD  R    L +     
Sbjct: 589 QMEKIKFHSE----NNRIVEVLATPVFGEGEEIDGIVIRVDDITDRERMIEELRQAKLLA 644

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            ++D++K++F+ ++S+E+R+PL  I+GF+DLL  S+     + + +Y++ I+ ++ +LL 
Sbjct: 645 EQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ---ADREEYMQIINTNNELLLK 701

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILDL+ +++G ++L Y    L +  N +  S+  +M    +R+  I+   +     
Sbjct: 702 LINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMKQRMVNPEVRLVTINPYDVCLVKL 761

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR R+ Q+ +  ++NA+ ++ KGS + +     +      VK+ G  IPE+    VF+RF
Sbjct: 762 DRNRVAQVMTNYVTNAIKYTPKGS-IEMGYEVMDTGIRLYVKDTGIGIPEEKKNKVFHRF 820

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  Q  G GLGLSI ++     GG V   S     +     IP
Sbjct: 821 EKLDEFAQ--GTGLGLSICKAITESMGGSVGFESKYHEGSLFWAIIP 865



 Score = 44.2 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/205 (10%), Positives = 60/205 (29%), Gaps = 7/205 (3%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFLATNP-SNDELLEFL 359
                   I  NL V + ++D    L   N   +++  +      L  N   N  + + +
Sbjct: 10  QTHRLQQTIYENLPVGMELYDCEGRLIEINSVGLKMMGVKDKQDMLGINIFENPNVPDEM 69

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
           +S  +  E + +    +   + +    T     +     ++     +      +++ +++
Sbjct: 70  KSRLRAGENIRFTVKYDFELAKFYYPTTLSGIRYFEITVSVVRDDENKEIDKFLFIAQDV 129

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS-NPAFRSLWKTEENRLSP-- 476
           T  V  E       +     +      +  F     +  + N    +   T+   +    
Sbjct: 130 TETVRTEEILRQSKQKTALAMQAADVVLWEFDVRTHLFYAENEPLNNCDPTQPLTIEDYK 189

Query: 477 -GTHIRNIAATCSRYYNESDGWDLF 500
              H  +         +  +G D  
Sbjct: 190 KHIHPEDWKEAEPILLDMLNGCDCL 214


>gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 935

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 131/268 (48%), Gaps = 32/268 (11%)

Query: 553 RALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           RA   + E L +  E     K+ F+ ++S+E+R+P+  +IG++DLL  +     + +Q  
Sbjct: 564 RAAKLEAERLAREAEAASLTKSEFLANMSHEIRTPMNAVIGYSDLLSNTVK---DPQQRN 620

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I A S  LL L+NDILDL+ ++AG M+L YS + +  LL++V+     +  E  I 
Sbjct: 621 YLDAIRAGSRSLLMLINDILDLSRIEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQGIS 680

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------- 717
           ++V  D K+ +  + D  RL Q+   ++ NA+ F+ +G  V ++A               
Sbjct: 681 LEVSVDSKMPAAMMLDETRLRQVLFNLVGNAIKFTHEGG-VTVRATATPRKSSEKQPVEE 739

Query: 718 -----------DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
                        + +V + G  IP D  + +F+ F      +  +  G GLGL+I    
Sbjct: 740 TASEVDRRCFYRLVVTVSDTGIGIPPDQQEQIFDAFEQQEGQNTRRYGGTGLGLAISRKL 799

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           + + GG + + S     +T   ++P  E
Sbjct: 800 VRMMGGELQVESEPGAGSTFTVKLPRVE 827


>gi|329961320|ref|ZP_08299466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328531926|gb|EGF58746.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 1040

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 169/376 (44%), Gaps = 37/376 (9%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  ++   ++L T +  + + Q    D+  E  A    +  +     A+ +L      ++
Sbjct: 556 ILCDVNKPIELSTHHEEITEEQLSVPDN--EYFAKIHKED-LPKVKEAYANLIAGRTQKV 612

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I N         ++   W    A I S+DD     QG  + L  S L  +     
Sbjct: 613 KEEYRILNHIN-----GHKHIDWVEAQAGIESYDD-----QGNPQTLVGSSLVIT----- 657

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                       +  + E  L        +++ +K++F+ ++S+E+R+PL  I+GF+ +L
Sbjct: 658 ------------ERKKMEDDLISAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGIL 705

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            +        ++ +YV  I  ++ +LL L++DILDL+ ++AG M+  YS   LN ++ E+
Sbjct: 706 AS---IEEEKEKQEYVSIIENNNALLLQLISDILDLSKIEAGTMEFIYSDFELNKIMAEL 762

Query: 655 KQSIATKMH-ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + S+  K+    NI +       +    A+  RL QI   +++NA+ F+  GS +     
Sbjct: 763 ESSLRLKLPPNKNISLTFEPQLPVCYIHAEHNRLSQIIINLVTNAIKFTDAGS-IRFGYE 821

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           + N    F V + G  IP+D  + +F RFV   +  Q  G GLGLSI  + +   GG + 
Sbjct: 822 KRNKILYFYVSDTGCGIPKDKKEEIFGRFVKLNNFAQ--GTGLGLSICRTLVQHMGGEIG 879

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    +T    +P
Sbjct: 880 LDSAIGKGSTFWFTLP 895


>gi|311693679|gb|ADP96552.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 957

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 139/320 (43%), Gaps = 14/320 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +  +    +R         ++      F+     L    E LS +  E         +
Sbjct: 203 NPVFELNEAVARLKEGKLDTRVYTGAGPEFEQLESGLNAMAEELSKAQAEMQQNIDQATE 262

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +   +    E  L    +   +A  IK+ F+ ++S+E+R+PL  IIGFT+LL  S
Sbjct: 263 DLRETLETIEIQNIE--LDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS 320

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L  +Q  ++  I  SS ILL ++NDILD + ++AG + L+     L D++ EV   
Sbjct: 321 ---PLPRQQRDHLSTIRKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVM 377

Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +A   H  N+ +  ++ +    + + D  R+ Q+ + +++NA+ F+  G  V+  +  + 
Sbjct: 378 LAPAAHAKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEEE 437

Query: 717 G------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
                      S+ ++G  +     +S+FN F         Q  G GLGL+I +  +   
Sbjct: 438 EADTNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEM 497

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + + S     +T    +
Sbjct: 498 GGKIGLESELGKGSTFWFTL 517


>gi|197105542|ref|YP_002130919.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum
            HLK1]
 gi|196478962|gb|ACG78490.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum
            HLK1]
          Length = 1952

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 168/381 (44%), Gaps = 29/381 (7%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +    + Q   +D L E + +          N    ++ +TE            + A 
Sbjct: 1135 ATFGEFNETQMAFLDQLMESIGIV--------LNTIAANM-RTEGLLKQSQLLTSELQAQ 1185

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   +D  +  AA +   ++  ++ Q  L+  +  + E +   L + Q         
Sbjct: 1186 QEELKKTNDRLEQQAASLRQSEELLRTKQEELQQTNAELQEKAH--LLSIQNQQVEAKNR 1243

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +  +A+ AL EK E L    + K+ F+ ++S+ELR+PL +++  + LL  +  G+L+ KQ
Sbjct: 1244 EVEQAKLALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKLLADNAQGNLSDKQ 1303

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++   I  +   LL L+NDILDL+ +++G + L+   +    L ++V ++ A    +  
Sbjct: 1304 VEFARNIHDAGADLLGLINDILDLSKIESGTVTLDIGEMAFAGLKDQVDRTFAQIAADKK 1363

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF------ 719
            +  +V  DG L  S   D +RL QI   +LSNA  F+ KG  V LK AR +G +      
Sbjct: 1364 LEFQVELDGALPRSMYTDDKRLQQIIKNLLSNAFKFTEKGH-VKLKIARAHGGWSSTNDH 1422

Query: 720  --------IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
                     FSV++ G  IPED  + +F  F         +  G GLGLSI      L G
Sbjct: 1423 LNTAGQVLAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREITRLLG 1482

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G + + S     +T    +P 
Sbjct: 1483 GELKVESKPGKGSTFTLYLPL 1503


>gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 775

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 150/371 (40%), Gaps = 6/371 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G +   N     +    E  +        
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVITWNAGAERIKGYTEQEIIGQHFSVF 318

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 319 YLPQECPQHPDMALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDQLRGFSKIT 378

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL+     S 
Sbjct: 379 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPAS- 437

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+++L E    ++   
Sbjct: 438 ---QRPQVGHILRAGQHLLKLINEVLDIARIEAGHISLSLEPVPLSNVLQEALVLVSPMA 494

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI +  +         VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 495 ADGNIELPALPQLPDELGVVADRQRLIQVLLNLLSNAIKYNRPNGQVRIEVEQSAERVAV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV ++G  I  ++   +F  F          G GLGL++ +S + +  G +S+ S     
Sbjct: 555 SVVDSGHGIAPELIDQLFKPFERLNADPSVEGTGLGLALSKSMLEMMHGTLSVHSVPGEG 614

Query: 782 TTINCRIPSKE 792
           +     +P  +
Sbjct: 615 SRFTLELPVVQ 625


>gi|83814181|ref|YP_446380.1| PAS domain-containing protein [Salinibacter ruber DSM 13855]
 gi|294508317|ref|YP_003572375.1| PAS domain S-box protein [Salinibacter ruber M8]
 gi|83755575|gb|ABC43688.1| PAS domain S-box protein [Salinibacter ruber DSM 13855]
 gi|294344645|emb|CBH25423.1| PAS domain S-box protein [Salinibacter ruber M8]
          Length = 1155

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 101/693 (14%), Positives = 244/693 (35%), Gaps = 83/693 (11%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLV--WHRDQAGD--ILWANISYKK---NT 226
            I  ++ +     ++L +  S  + + +S+  +   ++    G     + +    +    +
Sbjct: 461  IQRDVTDRREMEERLRDQRSRLRGMANSIPGVTYQFYARPDGTRGCHFVSEHAGEVLGLS 520

Query: 227  ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST-LEHGNNKSYKIVRVL-- 283
                  +++         +   +  +  +   E  +   +      G+            
Sbjct: 521  TDPDAFYEQFDDCVPAPHRARSQNEIEDAIEQEMPWRIELPFDRPSGDRLWLLDTATPER 580

Query: 284  --NSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIA---IFDQNRYLQFHNRS 334
                    G+ ID+++    E  + D+      +  +L   +    + D   Y+   N +
Sbjct: 581  RNGELVFNGVMIDITERKTAERALRDERDRFESLFESLPTPVMRCTVKDGTSYVSTVNEA 640

Query: 335  FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY---KSSETHKDT 391
            F   + +D   +     +  ++     A +    LN +  +E         ++ E  +D 
Sbjct: 641  FAHTFGVDPEAVEGENIDATIVP--DDAEQEGSALNRRAVQEGALKTEVRRRTKEGPRDF 698

Query: 392  WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET------------ 439
                 G+T      + P    I+   ++T +  LE       +++ +             
Sbjct: 699  QLQATGRT---RGDAPPEIHAIYT--DITERTRLEETLTYRSELESKIVDISTRFINTPI 753

Query: 440  ------IDHLSEGVAVFGPDGR--IKLSNPAFRSLWKTEENR----LSPGTHIRNIAATC 487
                  I+   + +  F    R  + L +    ++  T E R     S  + ++NI    
Sbjct: 754  DDLDREIEAALQAIGAFVDADRSYVFLFDDEAATMSNTHEWRTEATASTQSRLQNIPYAE 813

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFV--- 543
            + ++            +   +D      G  + L + +V    ++P+ N Q ++ FV   
Sbjct: 814  TPWFMARMRRREGPLRVPRLEDLPPDAAGLRQRLEAGNVQSLLVLPMLNDQDLIGFVGFD 873

Query: 544  ------------------------NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                                    N      AE+ +    E    A+ +K+ F+ ++S+E
Sbjct: 874  AVRQQRDWDADTVMLLRVLSDAISNALQRKTAEKEMLAAKEEAEDANRMKSVFLANMSHE 933

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            +R+PLT+IIGF + +             ++ + I  S   LL  ++ +L+L+ ++AG M 
Sbjct: 934  IRTPLTSIIGFAEAIGDELGDETAGPVLRFAQLIEKSGNRLLETLDGVLNLSKLEAGEMD 993

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            L    + L     E     A +   + I +    D       AD   +  +   ++SNA+
Sbjct: 994  LTIEPVNLAVQTAETADQFAPQAQASGISLHTDLDDAPVWARADEGAVHIVLRNLISNAI 1053

Query: 700  DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
             ++++G  V ++        + ++++ G  +  +    +F  F   +     +  G GLG
Sbjct: 1054 KYTNEGGEVEVQVRDAGTAAVMAIEDTGIGMNPEQVTDLFEAFRQASEGLGREYEGTGLG 1113

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            L++ +  ++   G + + +     T    R+P+
Sbjct: 1114 LAVTKQAVDHMNGSIDVETEKGVGTRFVVRLPT 1146



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 110/686 (16%), Positives = 216/686 (31%), Gaps = 90/686 (13%)

Query: 5   MATIGIGKGIEICT---LFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
           +A +G G G+   T        + +   +AG+ L   + I  L+  R +L  +  + +  
Sbjct: 147 LALVGGGLGVSYVTGPGPQINPLILLAGVAGISLAEGVAIRRLLSTRRALRNREEQLHVI 206

Query: 62  LSEICDQLSKYHSLLTENNCLTIVWDGKD-------ETPEII--GQLHQRIDIPQTDTDL 112
              + D + +            +V+  +        E+PE I           P     L
Sbjct: 207 TGNVSDGIYR------STPEDGLVYANQAFAELFGYESPEAILQADSASFYANPSDRQRL 260

Query: 113 LSFENWLKFHHYIKLSK-ATEKLRKEGQSF-----DLVAETQNDCAIKIEGRVS----GS 162
           L      + H    L +      RK+G  F       V    +      +G V+      
Sbjct: 261 LK-----EEHEADGLDQMEVRFRRKDGTPFIGLVSSTVVRDADGKPQYYDGAVTDITERK 315

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD-------- 214
               R+  L  +  +  +  L      N    F  L  +         + G         
Sbjct: 316 QRQRRLRVLSEVVEQADDGILVTALPRNGTPTFGDLAFANGEPDALVSKNGSSGDGANPP 375

Query: 215 ILWANISYKKNT---ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
           I++AN ++++ T   E E +     + E  +     I     +         ET++  + 
Sbjct: 376 IVYANRAFEEMTGYREEELLGRTVEVLEGPETDPSVINALQDADRDTRGWEGETINYQKD 435

Query: 272 GNNK--SYKIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTVAI------ 319
           G      +    V     E    A I  DV+    + ++L      L  +  +I      
Sbjct: 436 GTPYVAHWNTTSVQAEEAEVEYRASIQRDVTDRREMEERLRDQRSRLRGMANSIPGVTYQ 495

Query: 320 --AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
             A  D  R   F +    E+  +           D   E        P +   +   E+
Sbjct: 496 FYARPDGTRGCHFVSEHAGEVLGLSTD-------PDAFYEQFDDCVPAPHRARSQNEIED 548

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---GGTIW--MFENLTVQVDLETKYNTL 432
                +     +  +  P+G  L ++ T+ P    G  ++  +  ++T +   E      
Sbjct: 549 AIEQ-EMPWRIELPFDRPSGDRLWLLDTATPERRNGELVFNGVMIDITERKTAERALRDE 607

Query: 433 VKVQGETIDHLSEGVA---VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                   + L   V    V      +   N AF   +  +   +       NI AT   
Sbjct: 608 RDRFESLFESLPTPVMRCTVKDGTSYVSTVNEAFAHTFGVDPEAVEG----ENIDATIVP 663

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--QTMLTFVNVTD 547
              E +G  L    +     + +  + T E   D  L+ +     +A  +    + ++T+
Sbjct: 664 DDAEQEGSALNRRAVQEGALKTEVRRRTKEGPRDFQLQATGRTRGDAPPEIHAIYTDITE 723

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQH----VSYELRSPLTNIIGFTDL------LKTS 597
             R E  LT ++E   K  +I   F+      +  E+ + L  I  F D       L   
Sbjct: 724 RTRLEETLTYRSELESKIVDISTRFINTPIDDLDREIEAALQAIGAFVDADRSYVFLFDD 783

Query: 598 KLGSLNSKQSQYVEYISASSTILLNL 623
           +  ++++      E  +++ + L N+
Sbjct: 784 EAATMSNTHEWRTEATASTQSRLQNI 809


>gi|301312439|ref|ZP_07218355.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300829622|gb|EFK60276.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 1045

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 108/518 (20%), Positives = 223/518 (43%), Gaps = 59/518 (11%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE---LLEFLRS 361
           L+   ++ +N+ +        + L        E  +ID+  L  N + +E     +F+ +
Sbjct: 411 LSRYRDLFNNMPLPYI----RQRLI------REGTQIDVQVLDVNHAFEEKIAPKDFVVN 460

Query: 362 ANKLPEQLN-----WKTWKENIFSVYKSSETH-KDTWHLPNGQTLHVIVTSNPRGGTI-W 414
            +   E  N     +      + +V +S ++   + +  P G    +I+        +  
Sbjct: 461 KHG-KEIANLIGGSYPLLLSAVPTVLESGKSFTCEYYFEPTGLYYTIIIMPTSEENVVDA 519

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENR 473
            F ++T     +T    +       ++        +   +G+I              E++
Sbjct: 520 FFIDITDIHKFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIY------------ESK 567

Query: 474 LSPGTHIRNIA----ATCSRYYNESDGWDLFAAIITSFDD------ERKSLQGTLELL-- 521
           + PG +I            + Y         A +  +FDD      ++   +  LE L  
Sbjct: 568 VHPGDNIETAEVHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIP 627

Query: 522 ---SDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                   E  ++   +A       + + +++T+  + E  L    +   +++++K++F+
Sbjct: 628 GEDRHEWEEIQVMAEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFL 687

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+++L ++    L  K  ++ + I  ++++LL L+NDILDL+ +
Sbjct: 688 ANMSHEIRTPLNAIVGFSNILAST--DDLEDK-KEFADIIENNNSLLLQLINDILDLSKI 744

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG ++  Y  + +N +L +++QS   K    +++I      +      DR RL Q+   
Sbjct: 745 EAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMIN 804

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +L+NAM F+  GS +     RD+    F V++ G  IPE+  K +F RFV      Q  G
Sbjct: 805 LLNNAMKFTQAGSILFGYKLRDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTFAQ--G 862

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGLSI E  +    G + + S +   +     +P +
Sbjct: 863 TGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLPFQ 900


>gi|317130981|ref|YP_004097263.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475929|gb|ADU32532.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 608

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 159/387 (41%), Gaps = 26/387 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT ++ +         +     + H+++GV      G++ L N     L  
Sbjct: 238 GQLASAFNVLTKKLQEANETTEGEKRKLSSVLTHMTDGVIATDRLGKVILMNKRAEQLLG 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             ++ +  G  I  I     ++    D +     I+  FD + + +          +LE 
Sbjct: 298 HMQDDVL-GIEITKIL-NLDKFLTLDDLYTFKDPILLDFDSDEEEV----------ILEA 345

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
               +         +          A+        + +E +  FV +VS+ELR+PLT++ 
Sbjct: 346 HFSVIEKEAGAQNGLI---------AVLHDVTEQERIEEERREFVANVSHELRTPLTSMK 396

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L    +   +    +++      +  ++ LVND+L L+ +D+    +N   I L 
Sbjct: 397 SYLEALADGAIND-SEVAPRFIHVTQTETERMIRLVNDLLQLSKMDSKDYSMNVVEINLP 455

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
             ++++ +         +I  K          V  DR +L Q+   ILSNA+ +S +G T
Sbjct: 456 QFMDQIIERFEMATKNESISFKRRLTVNTDIIVFGDRDKLTQLLDNILSNAVKYSPEGGT 515

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           ++        + I S+K+ G  IP++    VF+RF        R   G GLGL+I +  +
Sbjct: 516 ILCSLKIAKDNVIVSIKDEGVGIPKENIPYVFDRFYRVDKARSRNLGGTGLGLAIAKEIV 575

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
           + HGG + +SS     TTI+  +P  E
Sbjct: 576 HAHGGSIWVSSDWGRGTTISFSLPFDE 602


>gi|330974060|gb|EGH74126.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 1377

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/510 (17%), Positives = 196/510 (38%), Gaps = 28/510 (5%)

Query: 293  IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            I V +   VND L++   ++ +  +A    D+   +++      +++ +           
Sbjct: 743  IKVEETDQVNDYLSN---LISSTDIATIFVDRELRIKWFTPRATDIFNMRA--------- 790

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----N 407
               ++  R    +  +L +    ++  SV+ S ++ +      +G    V V       +
Sbjct: 791  ---VDAGRPLMDITHRLKYDEMIDDAMSVFGSLKSIEREIASASGGWYIVRVLPFRSNVD 847

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSL 466
              GG +  F ++T + + E +     +      +   +  + V    G I   N      
Sbjct: 848  QIGGIVLTFVDITSRREAEQELRLSEERMRLVTEGTHDYAIVVLDEKGLITDWNKGAWHT 907

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +       + G H R I +   R     +     A      DDER  ++        S  
Sbjct: 908  FGYSREE-AEGRHFRFIFSAEDRRAGVPEMELASARAHGRCDDERWHVRKDGSRFYCSGE 966

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              ++        +    ++T+ ++ +    +       + + K+ F   +S+EL+ PL  
Sbjct: 967  VTALASKGFQGFVKIARDMTNHIKLQEEQQQSLAESLNSIQQKDQFFAVMSHELKHPLNL 1026

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            I     + +   +   +    + +  I+ +      +++D++D+A V  G ++L   T+ 
Sbjct: 1027 IQLNAQVARRLPVAKKDPTLQKAIGTITDAVASQARIIDDLMDVARVRNGKLQLQCKTLD 1086

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            +  L+NE++Q +     E   +I   +  +     AD+ R+ QI   +LSNA+ F+    
Sbjct: 1087 VVALVNEIQQVV--FKAEPGCKILFETPEQSLFIHADQTRIEQIIWNLLSNAIKFTPVEG 1144

Query: 707  TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVES 763
            TV +   +        V + G  I +D  + +F  F    H+    +R G+G+GL++V+ 
Sbjct: 1145 TVSVVTTQQEQWVRIEVIDTGPGIEKDQLERIFEMFGQADHQPSGKRRGGLGIGLALVQQ 1204

Query: 764  FINLHGGHVSISSSD-EGVTTINCRIPSKE 792
             +  H G +   S      +     +P  +
Sbjct: 1205 LVESHHGRIHAYSEGAGKGSRFTVELPLAD 1234


>gi|285017115|ref|YP_003374826.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472333|emb|CBA14839.1| hypothetical two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 838

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 120/266 (45%), Gaps = 12/266 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L  ++      +V    R ER L +  +A   A   K  F+  +S+E+R+PL  II   +
Sbjct: 75  LAESERNALQRDVHLRERLERELVQAKQAAEAAVLAKGEFLATMSHEIRTPLNGIIPMLE 134

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+  S    L+  Q + +   + SS  LL +V+DILD + ++A  ++L  +   L +LL+
Sbjct: 135 LIAHS---PLDLDQREMLRAANTSSLQLLRIVDDILDYSKLEANRLELETTAFNLRELLD 191

Query: 653 EVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +V Q +        +R+ +  D  +      D  RL Q+ S +L NA+ F+++G  + L 
Sbjct: 192 DVLQLMQRAAEAKGLRMALQLDRAVRLPVRGDPVRLRQVLSNLLGNAIKFTARGG-IDLH 250

Query: 712 AARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
             R           F V++ G  I  +  + +F  F        R   G GLGL+I +  
Sbjct: 251 VRRLGESPAQHVLRFEVRDTGIGISAERQERLFQAFTQADASTTRLYGGTGLGLAICKRI 310

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           + L GG + + S  +        IP 
Sbjct: 311 VELMGGRIGLESKLDHGAIFWFEIPL 336


>gi|308179222|ref|YP_003923350.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308044713|gb|ADN97256.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 624

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 154/400 (38%), Gaps = 31/400 (7%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V V S+   G +     NL+++V+  +       +     + H+S+GV      G I +
Sbjct: 233 QVRVYSDDELGQLAKAINNLSIRVEESQESTEAERRRLDSVLSHMSDGVIATDRRGNITI 292

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N            + + G  I +I      Y       +    ++    +ER       
Sbjct: 293 INETASDFMDVTAEK-AIGNSILDILKIRDDYSLRDLIENQDELMLDFSSNER------- 344

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               D +L      +      ++ +        E+          K D  +  FV +VS+
Sbjct: 345 ----DLILNAYFSLIQRESGFISGLVCVLHDVTEQQ---------KIDNDRKQFVSNVSH 391

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT++  + + L              +++     +  ++ ++N++L L+ +D+G  
Sbjct: 392 ELRTPLTSLRSYIEALSDGAWKD-PEVAPGFLKVTQEETDRMIRMINELLSLSRMDSGTT 450

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +++   + +N++ N V       + +         IK     +      D  +  Q+   
Sbjct: 451 RVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEIDTDKFTQVLDN 510

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQR 751
           I++NA+ +S  G  V  +    +   I S+ + G  IP      VF+RF  V  A    +
Sbjct: 511 IMNNAIKYSPDGGVVTCRLLETHNRVIISISDQGLGIPRADLGHVFDRFFRVDKARSRAQ 570

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL+I +  + + GG + + S +   +T    +P +
Sbjct: 571 GGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLPYE 610


>gi|289435761|ref|YP_003465633.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289172005|emb|CBH28551.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 591

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 154/368 (41%), Gaps = 27/368 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINADKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIDATFETKTMQQKEIILYFPREMILDASVSPILAEDGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +    +  
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EALL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N  T+ ++D++++  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKN 462

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I++           +  +R +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IQVSAPEKTVPPVIIETNRDQLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPTKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRIPSK 791
               +P K
Sbjct: 583 FRVTLPKK 590


>gi|159897135|ref|YP_001543382.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890174|gb|ABX03254.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 785

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 103/539 (19%), Positives = 200/539 (37%), Gaps = 75/539 (13%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           ++ NL+  +   D  R +   N +  +L +I         +   +LE L +        +
Sbjct: 241 LMENLSEGVIFLDAKRRVMDMNATAGKLLDIRPDQQIGQSAIVSILERLDAPQSDDSDEH 300

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLE 426
            + W+  +    K                L V ++         G + +  ++T +   E
Sbjct: 301 LR-WEYTLHRDEKKL-------------VLDVQLSPLSDRNRYLGHLLLLRDITERHQYE 346

Query: 427 TKYNT--------------------LVKVQGETID---HLSEG----VAVFGPDG----- 454
               +                    L +    T+D   HL+      + +          
Sbjct: 347 DLLRSQRNLFAGLVEVARATSAQIDLDQTLQSTLDVALHLTTAEQGSIFLLDQHQMVTHS 406

Query: 455 --------RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC--SRYYNESDGWDLFAAII 504
                   RI+  N   R + +     +     I  I  T    R+ +  +      +++
Sbjct: 407 ILAREKATRIEQQNLVGRVMRQGLAGWIVAHNQIALIKDTHTDDRWLHLPNAPYNARSVL 466

Query: 505 TSFDDERKSLQGTLELLSDSVLEYS-----IIPLPNAQTMLTFVN---VTDSVRAERALT 556
                    + G L LL   V  +      ++    AQ      N        +  R L+
Sbjct: 467 ALPIFGTAGILGILMLLHSEVDHFRQEHSELMEAATAQISFAIGNAHVYQTQQQLTRELS 526

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              +A   A + K+ F+ ++S+ELR+PLT IIG+ D+++   L S +      ++ I ++
Sbjct: 527 RAKDAAEAASQTKSQFLANMSHELRTPLTAIIGYADVMREDLLDSNDQIYLADLDRIRSA 586

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL L+ND+LDL+ ++AG M + +    ++ LLN+V  ++  ++  N+  + +     
Sbjct: 587 GAHLLGLINDVLDLSKIEAGKMPVYWEQTRVSILLNDVITTVRPQIDRNHNSLMIDQTYH 646

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPE 732
              F  D  +L ++   +L NA  F+  G T+ L    D  D        V + G  +  
Sbjct: 647 NLMFWTDISKLRRVLINLLGNAAKFTDHG-TISLSLFLDETDEPACLQIRVCDTGIGMTA 705

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   ++F  F        R   G GLGL+I  +   L GG + ++S     +T   ++P
Sbjct: 706 EQVANLFQNFSQADASTTRKYGGTGLGLAISRNLCKLMGGDIEVTSELGHGSTFIVKLP 764


>gi|299831229|gb|ADJ55757.1| hypothetical protein [Clostridium sporogenes]
          Length = 624

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 165/384 (42%), Gaps = 15/384 (3%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L   + N    
Sbjct: 207 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESASELLICDNNAELQ 265

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             +I        +   ++    ++         E+       E ++   +   II     
Sbjct: 266 NININKFIVQEEQKKIKNKLELVYKNKTDMICVEQIIQNNKREKINVESICTYIIYNNKP 325

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIK------NSFVQHVSYELRSPLTNIIGF 590
             +    ++T   + E+   +  + +   +E +        F+ ++S+EL++PL  I   
Sbjct: 326 AILSILRDITSQKQVEKLQKDVEKNIELLNESREYNKLITDFLANISHELKTPLNVIFTA 385

Query: 591 TDLL-KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +L    K G+   K+ QY++ I  +   L+ L+N++LD   +D+G +KLN     + +
Sbjct: 386 VQILDLYKKDGNSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVN 445

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ E+  S+       +I I   +D +      D  ++ +I   +LSNA+ F+  G  + 
Sbjct: 446 LIEEITLSVVYYAESKDINIIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNIY 505

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           +           SVK+ G  IP+D  +++F RFV      R  + G G+GL +V+SF+N+
Sbjct: 506 VNIKDCKDSITISVKDTGIGIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFVNM 565

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           H G + I S     +     IP K
Sbjct: 566 HEGTIDIQSVIGKGSEFIINIPVK 589


>gi|296418541|ref|XP_002838889.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634872|emb|CAZ83080.1| unnamed protein product [Tuber melanosporum]
          Length = 1966

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/541 (19%), Positives = 198/541 (36%), Gaps = 72/541 (13%)

Query: 308  TYEILHNLTVAIAI-FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               I+ ++ V +      N    + N   ++     +  L   P      + L   ++  
Sbjct: 998  LRTIIDSIPVHVFTALPHNGETTWVNARMLDYRGSTVEELIKGP-----WDALHPDDRGD 1052

Query: 367  EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIWMF---ENL 419
                W T           + +H+      +G     ++ + P    RG  +  F    ++
Sbjct: 1053 YVKRWGTAIRKG-----EAFSHQVRIRRFDGIYRWFMIRAVPLRDSRGIIVHWFGTNMDI 1107

Query: 420  TVQVDLE------TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK----- 468
              Q   E      ++            +   + V     +  I  +N  ++         
Sbjct: 1108 HDQRLAEVDAARQSEMAESESKYRSLANSSPQIVFAATSNDGITYANTQWQGYSGQTLPQ 1167

Query: 469  -----TEENRLSPGTH-----------IRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
                   E+      H           +  +    + +   + G +L A+    F++E+ 
Sbjct: 1168 ALQLGFMEHVHPADRHKCALPGPGETLVNGLPCLGNSFKMTAGGGNLGASGSGKFEEEKP 1227

Query: 513  SLQGTLELLSD----SVLEYSIIPLP------NAQTMLTFVNVTDSVRAERALTEKNEAL 562
            +    L L              + +       + Q   T  ++ +    E+ L E  +A 
Sbjct: 1228 TFSTELRLKDKHGNYRWHLVRCVGVETNFGTGDGQWFGTCTDINNHKLLEQRLKEAKDAA 1287

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E K  F+ ++S+E+R+PL  I G  + L  +    LN +Q  Y   IS SS  LL+
Sbjct: 1288 QKTMESKTRFLANMSHEIRTPLIGISGMVNFLLDT---PLNGEQLDYCHTISQSSDGLLS 1344

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
            ++NDILDL+ V+AG+M++N     +N L+ +  + ++      ++ +  I +  +   V 
Sbjct: 1345 VINDILDLSKVEAGMMRMNPEWFRINTLIEDANELLSAMAVAKDLELSFIVEDDVPPVVC 1404

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDF--IFSVKNNGSSIPEDM 734
             DR RL Q+   ++ NA+ F++KG       VI  A    G+    F   + G       
Sbjct: 1405 GDRVRLRQVMLNVIGNAIKFTTKGEVFSRWSVIKDAQVGEGEVMLQFECHDTGPGFDRKD 1464

Query: 735  CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN----CRI 788
             + +F  F        R   G GLGL I    + LHGG ++  S     +T       R+
Sbjct: 1465 EELMFKPFSQIDGSSTREHGGSGLGLVISRQLVELHGGRMTAKSQKGKGSTFICSSKFRL 1524

Query: 789  P 789
            P
Sbjct: 1525 P 1525


>gi|83950383|ref|ZP_00959116.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
 gi|83838282|gb|EAP77578.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
          Length = 540

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 115/518 (22%), Positives = 198/518 (38%), Gaps = 39/518 (7%)

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           ++ V    G   + +      +   +L    + ++     I   D    +   N +F   
Sbjct: 38  LLVVAFRRGSETMRLREHLLKSQQAELAFREKAINE-HAMILTTDSEGKILSVNENFTNA 96

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
                  L       EL  FL +A+  P E +  +T   +++S      +      +   
Sbjct: 97  LGFRANGLRG----SELRHFLGAADSAPYEAIARQTNGGDVWSGDLEVLSASGKLRILRT 152

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRI 456
             + +  T      T++   ++T Q   E +     +     +  L E V +   D G+I
Sbjct: 153 TAVPLFSTGMGHLKTMYFCNDVTKQRSGEQE-----RQLTRCLQLLPEDVYLVDMDSGKI 207

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSL 514
              N A     +  E                 R Y      D F A I      +     
Sbjct: 208 LFMNDAALRRMRWPEGEY--------------RTYGADRLPDPFGAAIRDLCAQEAPTDA 253

Query: 515 QGTLELLSDSVLEYSIIPLP-NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             TL+ L+    E   + +  N Q + T       V   R ++++ EA    +  + +F+
Sbjct: 254 SETLQFLT----ECHGVAMEANVQIIETVDGQKRFVAVLRDISQRMEA----EATRRNFM 305

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +++ELR+PLT+I G   LL     G L       +     +   LL LVNDILDL+ +
Sbjct: 306 SMMTHELRTPLTSIKGAVQLLTAGTAGPLEPGVMSLLRIAENNGERLLGLVNDILDLSKL 365

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG M+     + L  L++E  +S A       + ++  S         D+ RLLQ+ + 
Sbjct: 366 EAGKMEFTMGRMDLRALIDEAIESDAGYATGLGVTLRCKSPETPLWVTGDKGRLLQVLTN 425

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQR 751
           ++SNA  FS  GS V + A  +      ++ + G  IPE     +F  F       +G+ 
Sbjct: 426 LMSNAAKFSETGSQVEISARPNGDMIRVAISDRGPGIPEAARAGLFEPFKQAGAQDKGRI 485

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +G GLGL+IV++ +  H G V   S     TT    +P
Sbjct: 486 KGTGLGLTIVKAIVEHHDGRVDFVSELGKGTTFYFDLP 523



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 74/272 (27%), Gaps = 21/272 (7%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           SE         K       F+    +   ++   D  G IL  N ++           + 
Sbjct: 47  SETMRLREHLLKSQQAELAFREKAINEHAMILTTDSEGKILSVNENFTNALGFRANGLRG 106

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTL--EHGNNKSYKIVRVLNSFGEAG--- 290
           +         +      I+      +       +    G  +  +   V       G   
Sbjct: 107 SELRHFLGAADSAPYEAIARQTNGGDVWSGDLEVLSASGKLRILRTTAVPLFSTGMGHLK 166

Query: 291 ---IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHNRSFVELWEIDLAFL 346
                 DV+K+ +   +   T   L  L   + + D +   + F N + +          
Sbjct: 167 TMYFCNDVTKQRSGEQERQLTRC-LQLLPEDVYLVDMDSGKILFMNDAALR--------- 216

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTW--KENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                  E   +       P     +    +E      ++ +   +   +     + +I 
Sbjct: 217 RMRWPEGEYRTYGADRLPDPFGAAIRDLCAQEAPTDASETLQFLTECHGVAMEANVQIIE 276

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           T + +   + +  +++ +++ E      + + 
Sbjct: 277 TVDGQKRFVAVLRDISQRMEAEATRRNFMSMM 308


>gi|298486653|ref|ZP_07004711.1| Probable two-component sensor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158868|gb|EFH99930.1| Probable two-component sensor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 547

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 170/390 (43%), Gaps = 21/390 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E       +     ++     + V   +G +++ N ++  ++  +  
Sbjct: 10  AWMRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQRE 69

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  ++     + + I+P
Sbjct: 70  DIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQM----TIYHWILP 125

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  ++++++  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 126 FRDSLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 185

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 186 IGMLELALKRADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERAN 242

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 243 LRRLVESVLRVFDGLARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMG 302

Query: 706 ST-VILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
              ++L+AA            +V+++G  I  +  + +F  F    + GQ  R G GLGL
Sbjct: 303 RIKIVLQAAESPDPQLLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGL 362

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  S   + GG++S+ S     T I+  +
Sbjct: 363 VICRSLCMMMGGNLSLDSVPGQGTRISMNL 392



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L +     + L +     ++ RD+ G +   N SY +         
Sbjct: 12  MRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLR---VFSAQR 68

Query: 234 QKAIGESRK--LFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKS---YKIVRVLN 284
           +  IG+S    +     + R  ++         T   L+     G+ +    + I+   +
Sbjct: 69  EDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRD 128

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   + + L    E     + A + F
Sbjct: 129 SLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTF 170



 Score = 38.4 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 30/271 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  + DQ      ++      I + D+   L+  N S++ ++      +    + + +
Sbjct: 21  AAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGV 80

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L     A +                + +          +     L    +     G I  
Sbjct: 81  LGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTI-YHWILPFRDSLGEVQGIIGG 139

Query: 416 FENLTVQVDL-------ETKYNTLVKVQGETIDHLSEGV-----AVFG---------PDG 454
           + +++ +  L       + + +   + +   +  +S  +     AV G           G
Sbjct: 140 WIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHG 199

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDD- 509
            +  S  A    + +  + L     I +IA   S   +     ++   L  +++  FD  
Sbjct: 200 ELDRS--AIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 257

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +K L   LEL S    +  I PL   Q +
Sbjct: 258 ARQKDLDLVLELDSRINADVLIDPLRFKQIL 288


>gi|227523373|ref|ZP_03953422.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
 gi|227089479|gb|EEI24791.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
          Length = 617

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 153/390 (39%), Gaps = 30/390 (7%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   +     + +    + ++++GV      G + + N    S   
Sbjct: 239 GQLASAVNNLSVRVEESHESTESERRRLDSVLANMTDGVLATDRWGNVIIINETAASFLD 298

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +EN+ + G  I ++     + Y+  D  +    +I  F  +  SL             +
Sbjct: 299 LDENQ-AMGKSILDVLDI-RKDYSLRDLLEKPDELILDFSSDDHSLILHAH--------F 348

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    +R            D+ +  FV +VS+ELR+PLT++ 
Sbjct: 349 SLIQRESGFISGLVCVLRDITEQQR-----------IDQDRKQFVSNVSHELRTPLTSVR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             ++++     +  ++ ++ND+L L+ +D+G  K+    + +N
Sbjct: 398 SYIEALHDGAWKD-PKLAPKFLKVTQDETDRMIRMINDLLTLSRMDSGTQKMEVELVNIN 456

Query: 649 DLLNEVKQSIATKMH-----ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           +L N V       +      E    IK     +      D  R  Q+   +++NA+ +S 
Sbjct: 457 ELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKRDLWVDLDTDRFTQVLDNLMNNAIKYSP 516

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
            G  +  +        I SV + G  IP      +F+RF         Q+ G GLGL+I 
Sbjct: 517 DGGVITCRLYETRNKVILSVSDQGLGIPRKDIPHIFDRFYRVDKARSRQQGGSGLGLAIS 576

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  +    G +   S +   +T    +P +
Sbjct: 577 KEVVEALHGQLWAESVEGKGSTFYIALPYE 606


>gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1044

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 178/381 (46%), Gaps = 38/381 (9%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
                 +K + E +  ++  V V     G + L    F+                  + A
Sbjct: 478 KDLEAYLKQRPELVWEMAGLVKVIDVNQGTLNLYKANFK----------------DELLA 521

Query: 486 TCSRYYNESDGWDLFAAII------TSFDDERKSLQGTLELLSDSVLEYSIIP---LPNA 536
             SR + +    D    ++      TSF  ER+ +    + L  + L +S+IP   +  +
Sbjct: 522 GISRIFGKESYADFLQGLLLIASGETSFSFEREHVTLAGQNL-KTQLYWSVIPGYEVDYS 580

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + ++  V++T+ V  +  L +  E    A++ K+ F+ ++S+ELR+P   I+G   +L+ 
Sbjct: 581 RVLVCIVDITELVNIQEELIQAKEQAEAANQAKSEFLANMSHELRTPFNGIMGMMQVLQN 640

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L+ +Q ++V     SS     L++DIL+L+ ++AG M +  +   L +LL  +  
Sbjct: 641 T---DLDDEQQEFVNLSIQSSERFARLLSDILELSNIEAGKMIICPAHFSLQELLESLSG 697

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LK 711
             + + H+  + ++ + D  +    + D  R+ Q+   ++ NA+ F+ +GS  +    L 
Sbjct: 698 LFSAEGHQKGLALEFLMDSNVPAEVIGDATRVKQVMFTLVGNALKFTEQGSVQVQLTPLS 757

Query: 712 AARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
           A +       FSV + G  IPED    +FN FV        + +G GLGLS+V+  ++L 
Sbjct: 758 ATKGGDVRVQFSVFDTGIGIPEDRLSDLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDLM 817

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G++S+ S  +  TT++  +P
Sbjct: 818 NGNISVESEVDRGTTVHVVLP 838


>gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY]
 gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY]
          Length = 1137

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 154/341 (45%), Gaps = 6/341 (1%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             +     A   L +     L        +  T  +        +         + + + 
Sbjct: 344 HEVDFLVRAGEQLAQAVRGALDRSRLESLLDETQRQAEELQAQQEELRVNNEELEQQSRM 403

Query: 514 LQGTLELLS--DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           LQ +  L+    + LE+S   L  AQT          + A+ AL  K   L +A + K+ 
Sbjct: 404 LQESQNLMQAQQAELEHSNAQLE-AQTEQLQYQKQRLLTAQDALEAKARDLAQASQYKSE 462

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y + I  + T LLNL+NDILDL+
Sbjct: 463 FLANMSHELRTPLNSSLILAKLLADNKQQNLTAEQVRYAQTIHNAGTDLLNLINDILDLS 522

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQI 690
            ++AG   +    + +  ++  V + +  +  +  ++   + +  + +F+  D QRL QI
Sbjct: 523 KIEAGQTSVEIGQVTVAKVVAGVMEPLRAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQI 582

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
              +LSNA+ F+++G   +   A DN    F+V++ G  I  D  + +F+ F        
Sbjct: 583 LKNLLSNALKFTARGEVTLRVFAGDNDTLCFAVRDTGIGIAPDQQERIFDAFHQADGSTH 642

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  G GLGLSI      L GG +++ S+    +     +P
Sbjct: 643 RKYGGTGLGLSISRDLAQLLGGSIAVQSAPGEGSVFTLTLP 683


>gi|254413294|ref|ZP_05027065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179914|gb|EDX74907.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 498

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 142/380 (37%), Gaps = 11/380 (2%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +      +  + +   +  + +  G+    P G+I  +NP    L      +    T+I
Sbjct: 107 ERSKQHQAFKEMQQRYQQLFESVPIGLYRMTPTGQIIEANPTLLQLLGYPSVQALLDTNI 166

Query: 481 RNIA------ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                            +           +   D+    ++     + +S  E       
Sbjct: 167 SKHLVDTQANRLWQSQIDGEGVVRNLEIPMRRCDNTMIWVRYNARAIRNSQGEVMYYEGA 226

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                      T+  +  ++          A+ +K+ F+  +S+ELR+PL  I+G+  LL
Sbjct: 227 IEDVTQRKQAETERTQLLKSEQAARAEAETANRLKDEFLATLSHELRTPLNAILGWAGLL 286

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +  +L     K  + +E I  ++     L++D+LD++ +  G ++L    + L  ++N  
Sbjct: 287 RRKQLSP--DKVQRALEVIERNAKSQAQLIDDLLDVSRIIRGNLRLTVIPVDLQQIINAA 344

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++       +I+I    +        D  RL QI   +LSNA+ F+     V +    
Sbjct: 345 IDTLQPAADAKSIQIDSFLEPSQTVIKGDSDRLQQIVWNLLSNAIKFTPTHGQVKIYLEW 404

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
                   V++ G  +  D+   +F+RF            G+GLGL+IV   + LHGG V
Sbjct: 405 LENAVQIRVQDTGKGVSVDIAPYIFDRFRQAEGSITRSHGGLGLGLAIVRHLVELHGGTV 464

Query: 773 SISSS-DEGVTTINCRIPSK 791
              S  D    T    +P K
Sbjct: 465 WCESDGDGKGATFIVELPLK 484



 Score = 38.0 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQL-----THTYEILHNLTVAIAIFDQNRYLQFHNR 333
           I++    +     A+  + E +   Q          ++  ++ + +        +   N 
Sbjct: 88  IIKSPQHYTRLAAAVRAAWERSKQHQAFKEMQQRYQQLFESVPIGLYRMTPTGQIIEANP 147

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI--FSVYKSSETHKDT 391
           + ++L           PS   LL+   S + +  Q N + W+  I    V ++ E     
Sbjct: 148 TLLQLLGY--------PSVQALLDTNISKHLVDTQAN-RLWQSQIDGEGVVRNLEIP--- 195

Query: 392 WHLPNGQTLHVIVT----SNPRGGTIW---MFENLTVQVDLETKYNTLVKVQGET 439
               +   + V        N +G  ++     E++T +   ET+   L+K +   
Sbjct: 196 MRRCDNTMIWVRYNARAIRNSQGEVMYYEGAIEDVTQRKQAETERTQLLKSEQAA 250


>gi|150390836|ref|YP_001320885.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950698|gb|ABR49226.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 586

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/359 (23%), Positives = 161/359 (44%), Gaps = 22/359 (6%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +  +++GV     + +I L N   R L             +       S       
Sbjct: 247 MDSMLTGMTDGVIALDLNKKILLINHESRELLN-----------VEQDVVIGSPMDKAIQ 295

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +++  I  +F   +KS +  ++L+ ++     I+ + ++  ++   N  D V     L
Sbjct: 296 NNEMYEMIENTFIH-KKSYEEEMKLMDENK---RIVKVKSS--LMKNKNDNDDVIGVFLL 349

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VEYIS 614
            +    +RK + +K+ F  +VS+ELR+PLT I GF + L++    SL+ K  +  +  I 
Sbjct: 350 IQDVTEIRKLEALKSEFAANVSHELRTPLTLISGFVETLQS--WESLDEKDRKMALNIIE 407

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L+NDIL L+ ++       Y  + +  L+NEV+  ++    + NI++K   +
Sbjct: 408 LETERLKRLINDILRLSEIENIQRLAKYEVLDIEGLINEVQYMMSGIAAKKNIQLKTHIE 467

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             + +   +     Q+   ++ NA+ ++  G  + + A  +  +    V +NG  IP++ 
Sbjct: 468 KNVHTLFGNSDWFKQMLVNLIENAIKYTPTGGQIKVSAKNEQNEISIMVMDNGIGIPKED 527

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           C+ +F RF        R   G GLGL+IV+  +   GG + +SS     +    R+PSK
Sbjct: 528 CERIFERFYRVDKARSRDVGGTGLGLTIVKHIVTEFGGTIEVSSKLNQGSHFKVRLPSK 586


>gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
 gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
          Length = 692

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 125/255 (49%), Gaps = 6/255 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +++   +  R +        KA++ K+ F+  +S+E+R+PL +I+G  D+  +S   
Sbjct: 300 TAKDISARKKRIRDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDVFHSSL-- 357

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q  ++  + +SS +LL +++D+LD++ ++AG   LN   I L   LN     + T
Sbjct: 358 -LSEEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDT 416

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  +  I + V +   +  +V AD  RL Q+   ++ NA+ F++ G   +      N   
Sbjct: 417 RAKDKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSI 476

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  I     + +F  FV        +  G GLGL+I++  + L  G +++ S 
Sbjct: 477 SISVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESR 536

Query: 778 DEGVTTINCRIPSKE 792
               +T    +P KE
Sbjct: 537 LNIGSTFKITLPLKE 551


>gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 182/466 (39%), Gaps = 42/466 (9%)

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---G 411
           + E L        +L ++     I S +++   H+          +HV+   N  G    
Sbjct: 22  IWEALPPETSSEVELPYRQAFAGISSRFEAPYGHRVY-------EVHVLPVRNDDGEIFA 74

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT-- 469
            + + + +T +   E      +++    ID     V  +     +   +     ++    
Sbjct: 75  GMTITQEITERKQSELALQDALQLLNLHIDTTPLAVVQWDCHLCVTRWSSTAEKIFGWRT 134

Query: 470 --------EENRLSPGTHIRNIAATCSRY--------------YNESDGWDLFAAIITSF 507
                   ++  +     +  +A   +R               Y +           +S 
Sbjct: 135 EEVIGKYFQDLHMVYEEDMTAVAEASNRLLSGQESQIIQYNRNYTKDSRVIYCEWYNSSI 194

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            +E  S+   L L+ D               ++       ++  ERA       L +A  
Sbjct: 195 TNEAGSVTSVLSLVLDVTERIQAEKALRQSELMVIEERAQALERERA---ARIELERASR 251

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+  VS+ELRSPL  I+G++ LL+T KL     K  Q +E I  ++     L+ D+
Sbjct: 252 MKDEFLAIVSHELRSPLNGILGWSRLLRTRKLSP--EKIEQALESIERNAQAQTQLIEDL 309

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ +  G ++L      L  ++     ++    +  +I+I    +  +G   AD +RL
Sbjct: 310 LDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERL 369

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +LSNA+ F+ +G  V +   +   +    V + G  I  +    VF+RF     
Sbjct: 370 QQVIWNLLSNAVKFTPEGGRVEICLEQVETNVQIRVTDTGKGISPEFLPYVFDRFRQADA 429

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
              R   G+GLGL+IV + + LH G VS++S  +    T   ++P 
Sbjct: 430 TTTRNQGGLGLGLAIVRNLVELHNGTVSVASPGEGQGATFTVQLPL 475


>gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 1054

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 11/237 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E + +A++ K+ F+ ++S+E+R+PL  I+GFT LLK +    L+  Q +++  I  SS  
Sbjct: 371 ETIVEANKAKDLFLANMSHEIRTPLNGIVGFTQLLKNT---PLSPDQQEFISVIENSSDN 427

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LL++VNDILDL+ ++A  ++L        +   +  +S   K  E NI   +  D  +  
Sbjct: 428 LLSIVNDILDLSKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIPK 487

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPED 733
           + V D  ++ Q+   ++SNA+ F++    V +   + N         F+V++ G  I E+
Sbjct: 488 TLVGDPTKISQVIVNLVSNAIKFTNSNGDVEVLIEKTNETDKDATIYFAVRDTGIGITEE 547

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F         +  G GLGL+I    +   GG + I S     +T    +
Sbjct: 548 QKAKIFGAFSQADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIESEPGKGSTFFFTL 604


>gi|187777059|ref|ZP_02993532.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC
           15579]
 gi|187773987|gb|EDU37789.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC
           15579]
          Length = 617

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 165/384 (42%), Gaps = 15/384 (3%)

Query: 422 QVDLETKYNTLVKVQGET-----IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + D + KY   +  + +T     I++  + + +   D +I  +N +   L     N    
Sbjct: 200 EKDSQRKYIEELLFKNDTCYNLLIENARDAIIIHRKD-KIVFANESASELLICSNNNELQ 258

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             +I N      +    +    ++         E+       E ++   +   II     
Sbjct: 259 DININNFILKEEQKKIRNKLELVYRNKSDIICVEQVIQNNKKENINVESISTYIIYNNKP 318

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIK------NSFVQHVSYELRSPLTNIIGF 590
             +    ++T   + E+   +  + +   +E +        F+ ++S+EL++PL  I   
Sbjct: 319 AILSILRDITSQKQVEKLQKDVEKNIELLNESREYNKLITDFLANISHELKTPLNVIFTA 378

Query: 591 TDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +L   K  + +  K+ QY++ I  +   L+ L+N++LD   +D+G +KLN     + +
Sbjct: 379 VQILDLYKKDANSYDKKEQYIKVIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVN 438

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ E+  S+       NI I   +D +      D  ++ +I   +LSNA+ F+  G  + 
Sbjct: 439 LVEEITLSVVYYAESKNINIIFDTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNIY 498

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           +           SVK+ G  IP+D  +++F RFV      R  + G G+GL +V+SF+N+
Sbjct: 499 VNIKDCKDSITISVKDTGIGIPQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFVNM 558

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           H G++ I S     +     IP K
Sbjct: 559 HEGNIDIQSVIGKGSEFIINIPVK 582


>gi|78776816|ref|YP_393131.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497356|gb|ABB43896.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 884

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 158/385 (41%), Gaps = 15/385 (3%)

Query: 411 GTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G +  + +   + + E  ++  L+    + +D  S  ++    +G+I   N  +  +   
Sbjct: 130 GILKYYTDTIYKKEQEIDRHVKLLSEYQKALDE-SAIISKTDKNGKITYVNDKYVKISGY 188

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
               L    H    +    +   +    DL+  +  +    R +++   +      ++ +
Sbjct: 189 SAESLIGSYH----SIVKHQDMPDEYFKDLWFQL-ENMGIFRGTIKNNKKNGDYFYIDVT 243

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I+ + +     T      +      L +     +KA + K  F+ ++S+E+R+PL  I+G
Sbjct: 244 IVKITDPYDNTTEYISIANDVT--TLIDARLEAQKASQAKEYFLSNMSHEIRTPLNAILG 301

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F +LL       L+ +  +Y+E I  S   LL+++NDILD + + +G   +      +++
Sbjct: 302 FVNLLIDQ---DLSKQHRKYLEIILNSGENLLSIINDILDFSKLRSGEFTIEPRIFSIHN 358

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++   +      +   I I    D  +     AD  R+ QI S  LSNA+ F+  G  +
Sbjct: 359 EISHTLELFVASANLKEITITSFIDPVIPKELYADSLRIKQILSNFLSNAIKFTRVGGHI 418

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
            ++A   N     SV++NG  I      ++F  F     A      G GLGLSI      
Sbjct: 419 HVEATCKNRTLRVSVQDNGIGIAAGDISNIFTAFTQAGGAEVEHMVGTGLGLSICNQLSK 478

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
              G V + S     +T   ++P +
Sbjct: 479 HMNGSVHVVSELGQGSTFWVQLPVE 503


>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
 gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
          Length = 837

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 10/244 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  +  + E+   A+  K  F+ ++S+E+R+P+  IIG T+LL  ++L     +Q +Y+
Sbjct: 156 AKDVIQSQKESADAANRAKGQFLANMSHEIRTPMNGIIGMTELLLETELA---PQQHEYL 212

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S+  L++++NDILD + ++AG +++      L + L ++ +++A + H   + + 
Sbjct: 213 QMIKTSADCLVSVINDILDFSKIEAGKLEIESIPFQLRENLGDLMKTLAFRAHGKGLELV 272

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKN 725
                 +      D  RL QI   ++ NA+ F+  G  V+     + +  +    F+V +
Sbjct: 273 AHVRPDVPWRMTGDPGRLRQILVNLVGNAIKFTEHGEIVVRVDIDEISETDALLHFTVCD 332

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPE   + +F  F        R   G GLGLSI    + L  G + + S     + 
Sbjct: 333 TGIGIPEAALQKIFAAFEQADGTTTRKFGGTGLGLSICSRLVELMHGKIWVESQVHVGSQ 392

Query: 784 INCR 787
            +  
Sbjct: 393 FHFT 396


>gi|255514120|gb|EET90383.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 745

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 111/601 (18%), Positives = 216/601 (35%), Gaps = 36/601 (5%)

Query: 202 LDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGESRKLFKEEIKKRMISSSALE 259
                +     G I+  N     +      G  F +AIG S K                E
Sbjct: 161 APMPQFIISSEGSIIKFNKEALLHFAKVQTGSKFDEAIGASFKEIVNS----------SE 210

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
           K     V+   +   +++++     S     +A   +    +N        +  +  V I
Sbjct: 211 KRNPVKVNIPVNNEIRNFEVKVSKVSSTAFHMAF--TDRTALNKFEKIMALVNESPDVCI 268

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
              D+N Y+    +  V  +      +    S   LL F      L              
Sbjct: 269 MFSDKNLYI----KEIVGTFGKLPVSMNELMSGQNLLNFSAQDKFLESLKKVLEKGAQET 324

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           S  + +    +   +     +H  +T    G  I + ++     D E           + 
Sbjct: 325 SFGELNLLLLNGLQI----HVHYSITRINDGYVILVVDS-----DNEKLVENAKSNLDDF 375

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA---ATCSRYYNESDG 496
           ++  S+ V      G IK  N +   +       L+ G  I++I        R       
Sbjct: 376 VNATSDPVISVDNLGYIKKVNLSAERILGYNREELN-GKEIKSIYKENEILDRDIAYVRN 434

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                    +   + +SL   +  +       +   +   + + T   +       RAL 
Sbjct: 435 GGKIDGTYVNLIKKDQSLMPAVHSIRSINESGNADYIILLKELETKQMIERQEEYLRALD 494

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            + +      ++K+ F+  +++EL++PLTNI+GFT LL   + G +  +Q +Y++ I   
Sbjct: 495 TRIKRSESVGQLKSQFISDIAHELKTPLTNIMGFTKLLYDGEFGEIPEEQKEYLKTILDE 554

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE-VKQSIATKMHENNIRIKVISDG 675
           S  L+ ++  +LD A +DA  +KL+ + I + +L N    +++        +    I   
Sbjct: 555 SDRLMFIIMQVLDAAKLDARRVKLDLTEISMTELYNNPSIRALEESATNKGLAFDWIVSY 614

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                 AD  R++Q+F+ ++ NA+ F+ KG   +    +        V + G  I E+  
Sbjct: 615 DTPIVQADLSRIIQVFTNLIGNAIKFTEKGGIKVNIYKKSRNTIACEVIDTGIGIGEEDK 674

Query: 736 KSVFNRFVSNAHRG----QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + +F +F   + +        G GLGL+I +  ++LH G +   S     +     IP K
Sbjct: 675 RKIFRKFYQASKKNLTIQNGAGTGLGLAITKEIVSLHHGKIKFESELGKGSKFWFTIPIK 734

Query: 792 E 792
           +
Sbjct: 735 Q 735


>gi|288960032|ref|YP_003450372.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912340|dbj|BAI73828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 751

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 155/402 (38%), Gaps = 56/402 (13%)

Query: 435 VQGETIDHLSEGVAVFG---PDGRIKLSNPAFRSLWKTE--ENRLSPGTHIRNIAATCSR 489
           +    ++    G+AV     PD  I   N AF  +      E     G  +   A     
Sbjct: 71  MFAAVVEASGAGIAVTDATRPDHPIVYCNRAFLEMIGYTAEEVIGRDGGFLHGPATDAET 130

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFVNVT 546
                        +     + RK        LS        +P P+ +      T  +VT
Sbjct: 131 AAAIRAALAEARPLSVEVVNHRKDGSAFWNALS-----LRPVPGPDGRARWITATCADVT 185

Query: 547 DSVRAERALTEKNEALRK----------------------------ADEIKNSFVQHVSY 578
           DS R++  L    E L +                            A   K+ F+  +S+
Sbjct: 186 DSRRSQEELRAAEEQLTRLAAETFALAEKLDGAREEAEDARVAAENASRAKSRFLAMMSH 245

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+T +IG  DLL  +    LN +Q   V+ + +S+  L+ ++ND+LD + ++AG +
Sbjct: 246 ELRTPMTAVIGMGDLLLGT---GLNEQQIALVKTLRSSADTLMTILNDVLDFSKIEAGQL 302

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSN 697
            L      L  L+ +V Q    +     + +   I++        D  RL Q+   ++SN
Sbjct: 303 TLEEIDFSLPRLVEDVVQLFLVRAAAKGLSLSASIAENTPRHIRGDPTRLRQVLYNLVSN 362

Query: 698 AMDFSSKGSTVILKAARDNG---------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           A+ F+ +G+  I   + D              F V+++G  +  D    +F+ FV     
Sbjct: 363 AIKFTDRGAIEIAVWSPDPPASPLSASPMTLRFEVQDDGIGMTADQRARLFDAFVQADAS 422

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             R   G GLGLSI +  +   GG +S++S+    +T    I
Sbjct: 423 TSRKYGGTGLGLSICKRLVEAMGGEISVASTPGRGSTFRFSI 464


>gi|309790734|ref|ZP_07685283.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227225|gb|EFO80904.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 871

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 194/561 (34%), Gaps = 92/561 (16%)

Query: 306 THTYEILHNLTVAIAIF---DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
              +  L  ++V I I      +  + + N +F  L       L   P   E+L      
Sbjct: 39  QTFHAALEAMSVGIVITQLKGADHRIIYVNPAFSHLTGYSREELIGQPV--EMLRSPNPD 96

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWM 415
                 L+    K+   +V   ++         +G      +T++P         G I  
Sbjct: 97  LGALNILDEAIQKQQPCTVVLRNQ-------RKDGTPYWNELTASPIFDAQHGCSGFIGF 149

Query: 416 FENLTVQVDLETKYNTLVK--------------------VQGETIDHLSEGVAVFGPDGR 455
             ++T +V+ E      ++                       +T+ H+ E +       R
Sbjct: 150 QTDVTARVEAEATVTQQLRYAEALATCSSVLLSSHSSPDAYQQTLAHVLEIMRQTVQADR 209

Query: 456 IKL--------------SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           + +               +    +     +      +    +    +      +    F 
Sbjct: 210 VTIYRYLEADTGMAERVHSMQLLAYANGPDLPPQRPSSYTEMLDFPTELVALVEARSYFN 269

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--------- 552
             +     +  + Q  L+   + +      PL    T    ++V D   A          
Sbjct: 270 GPVVKRFGQHPAFQRYLD--DNQIRSVIFQPLIIQGTWWGHISVNDHHEARQWDAMTVRF 327

Query: 553 ------------------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                             +AL    EA   AD+ K++F+  +S+E+R+PL  +IG +   
Sbjct: 328 VRTAAEMLITFAESWQTAQALIAAKEAAEAADKAKSAFLAMMSHEIRTPLNAVIGMS--- 384

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                  L+  Q +Y   I  S   LL L+ DILDL+ ++AG M L      L+  L+E 
Sbjct: 385 SLLLNSDLSELQHEYATTIGTSGKTLLALITDILDLSRIEAGQMVLEQQPFSLDTCLSET 444

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +A     + + +K      L +    D  RL QI   +LSNA+ F+ +G  V+   +
Sbjct: 445 LSIVAHAATTHGLMLKSQVRPGLPALVYGDVNRLRQIVVNLLSNAIKFTRRGEVVLSAES 504

Query: 714 RDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           +            V++ G  I  +  + +F+ FV       RR  G GLGL+I      L
Sbjct: 505 QPQANGYHHITIQVRDTGIGISAEQIERIFHPFVQADSSTTRRYGGTGLGLAISRQLAEL 564

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG ++++S  E  +T   R+
Sbjct: 565 MGGTLTVTSVPERGSTFTLRL 585


>gi|284166199|ref|YP_003404478.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015854|gb|ADB61805.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 674

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 106/587 (18%), Positives = 217/587 (36%), Gaps = 48/587 (8%)

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
             + ++      +L         +S           V      + K +           A
Sbjct: 105 DDLREEERFSGPELLTNHDVVSGVSVIIGSVEEPWGVLGTHTTDRKEFTTHEANFVQSAA 164

Query: 290 GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            I     +     DQL      L       ++ + ++D    +   +    E + +D   
Sbjct: 165 NILAAAIERANKEDQLREREAQLSVATDAASIGLWLWDVRENVFTADEFLAEAYGMDPEI 224

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           + T    +   E       +PE      W     ++     + +      +G  + V+  
Sbjct: 225 VTTGAPIEAFFE------PVPETDEDGIWDRLDRALETGVFSAEYRIENGDGDVMWVVSR 278

Query: 406 S----NPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP------ 452
                +  G  + M     ++T +   E +         +    +SEG  V         
Sbjct: 279 GEVEYDASGDPVRMHGAVTDITERKRREQQLKEREARYRDLFTSMSEGYCVIERVDTPPA 338

Query: 453 ---DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              D R   +NPAF       +     G  IR +         + + ++ + +++ + D 
Sbjct: 339 EPIDFRYIEANPAFEEHTGLADVV---GKTIRELVPE-----EQEEWFETYDSVVETGDP 390

Query: 510 ERKSLQGTLELLSDSVLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            R   + T +      LE    P+    +AQ  + F +VT+ V  ER L E  E L  ++
Sbjct: 391 VRFERELTTQ---GRFLECYAFPVGDESDAQVGVLFTDVTERVERERRLEELVERLETSN 447

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           +    F    S++L+ PL  +  +  L++      L+++  +++++    +  +  +++ 
Sbjct: 448 DRLEQFAYAASHDLQEPLRMVSSYLQLVERRYGDELDAEGREFLQFAVDGADRMREMIDG 507

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +L  + V+       +  + LN +L +V   +  +  E+N  +   S   L +   D  +
Sbjct: 508 LLKYSRVETEGDP--FEPVDLNAVLEDVLDDLQLRFEESNGEVTTES---LPTVEGDSGQ 562

Query: 687 LLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFV 743
           L QIF  +L NA+++S  G   + + A R +GD  +  SV ++G  I  +    +F+ F 
Sbjct: 563 LRQIFQNLLDNAIEYSGDGPPRIRVSAERRSGDDAWEISVSDDGIGIDSEYSDQIFDVFQ 622

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           S        G G+GL+I E  I  HGG + ++S     +T    +P+
Sbjct: 623 SYHEGEGYNGTGIGLAICERIIERHGGEIRVTSEPGEGSTFTFTLPA 669


>gi|255015778|ref|ZP_05287904.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|256841727|ref|ZP_05547233.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736621|gb|EEU49949.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 752

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 166/383 (43%), Gaps = 29/383 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           ++ +  +   L +     +   +    ++   + R++ +N          +  +      
Sbjct: 378 ELQIARQAQDLNQKYQLVLKASNMMTWIWDVKEARLECNN------IYLTQRSIRDKGTD 431

Query: 481 RNIAATCSRYY---NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL---- 533
                +   +Y   +  D   +  AI      E  S+   +  L D+ LEY+ I +    
Sbjct: 432 GQFCMSADEFYSGIHPEDLEQMQDAINKLIAGESISIDEEIRYLDDTGLEYTWIEIFAIV 491

Query: 534 -------PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                    A        +    + E+ L    E + +++ +K++F+ ++S+E+R+PL  
Sbjct: 492 GKTDPEGKPAYLTGGTTLINQRKKMEQELR-DKEKIEESNRLKSAFLANMSHEIRTPLNA 550

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF++LL  +   + + +  ++ E I  ++ +LL LVNDILDL+ ++AG M   YS   
Sbjct: 551 IVGFSNLLAQT---NPSEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFN 607

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           ++ L   + Q+  +++ +  + +      +     +++ RL Q+ +  L+NA  F+ +GS
Sbjct: 608 VSTLFRSLYQTFQSRVKD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS 666

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            + +          F VK+ G  I       VF RF       Q  G GLGLSI ++ ++
Sbjct: 667 -IRMGYKEREDGLYFYVKDTGKGIERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILD 723

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
              G + + S +   +T    IP
Sbjct: 724 NLHGKIGVESEEGKGSTFWFTIP 746


>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 844

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 25/255 (9%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N+ L +A   K+ F+ ++S+E+R+P+  +IG T LL  ++   L  +Q +YVE   
Sbjct: 173 LVALNQKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALLLDTE---LTDEQREYVEATR 229

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+  +L ++NDILD + +++G + L      L+  + E    +A K  E ++ +    D
Sbjct: 230 SSADAMLTIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSVD 289

Query: 675 GKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------------- 718
             +    V D  RL QI   ++ NA+ F+++G  V ++                      
Sbjct: 290 DAIPKILVGDVTRLRQILVNLIGNAVKFTNEGE-VFIQVKPAPKHFNDRDRSASSITGPD 348

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                FSV++ G  IP D    +F  F        R   G GLGL+I +    L GG + 
Sbjct: 349 MWMLQFSVRDTGVGIPIDKQHRLFKSFQQVDASTTRHYGGTGLGLAICKKLSELMGGDIQ 408

Query: 774 ISSSDEGVTTINCRI 788
           + S     +T +  I
Sbjct: 409 VESDAGKGSTFHFTI 423


>gi|302871717|ref|YP_003840353.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574576|gb|ADL42367.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 576

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 162/370 (43%), Gaps = 31/370 (8%)

Query: 425 LETKYNT---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE K +    L K     +D +  G+  F  + RI + N    ++    E  L  G  + 
Sbjct: 224 LEEKISESNILRKRLTSLLDSIDIGIIFFDVNKRILMFNRGAENIL---ETNLKIGFSLL 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                C R Y      +LF      F  ++ + +  LE+  ++ L++  +          
Sbjct: 281 E----CVRVY------ELFE-----FLFQQDTKEKELEISINNKLKFLKV-------SKK 318

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            ++  D       +      L+K + +++ FV +VS+EL++PLT+I GF + LK   +  
Sbjct: 319 KISYEDGKEGILLILSDITFLKKLERVRSDFVANVSHELKTPLTSIKGFVETLKDGAIDD 378

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +    +++  I      L+ L+ND+L L+ ++   M +    +V+ +++ E  + +  K
Sbjct: 379 KDV-ALKFLNIIEVEVERLVRLINDLLYLSEIENAAMPILDEKVVVKEVVLESIELLKIK 437

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             + NI+   I           R  L QIF  ++ NA+ ++ +   V +   + NG  + 
Sbjct: 438 AEKKNIQFVDIKVPDGLEMNIYRDWLKQIFINLIDNAIVYNKENGKVWVTVEKSNGMVVI 497

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            VK+ G  IPE   + +F RF        R   G GLGLSIV+  + L+GG + + S + 
Sbjct: 498 KVKDTGIGIPEKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEG 557

Query: 780 GVTTINCRIP 789
             +     IP
Sbjct: 558 YGSEFTVIIP 567


>gi|224535753|ref|ZP_03676292.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522613|gb|EEF91718.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 709

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 164/375 (43%), Gaps = 17/375 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGT 478
           T +  +ET      +   + +D+++  + V   D  ++  +N  FR              
Sbjct: 202 TKRWQVETSLQLSQRTMQKVLDNINANIFVCDYDTQKVLFANKPFREEAGQVSGNAECWK 261

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +         +  +    D                      +++       + +     
Sbjct: 262 MLNAGLNGLCAHCPKPQLLDADRKFT------GVHFWEDYNPITERWYTIQSMAIKWLDG 315

Query: 539 MLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    ++T   + E  L    E   ++D +K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 316 RWAIMELATDITTRKQVELELILAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLL 375

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 + + ++  Y+  +  ++ +LLNL++DILD++ ++AG ++L  + + +  L  EV
Sbjct: 376 AE----ADDDERESYMSLVEENNELLLNLISDILDISKIEAGTVELIITRVDVARLCREV 431

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + + K HE  + ++           AD+ R++Q+ S  ++NA+ F++KGS  +     
Sbjct: 432 ISTCSHKKHEEAVGLRFDESSPQIMVDADKNRIMQVLSNFITNALKFTTKGSVTLSYRLE 491

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D+G   F V + G  IP +    +F+RFV      Q  G GLGLSI +S +   GG + +
Sbjct: 492 DDGLLHFCVTDTGKGIPAEQQHEIFSRFVKLDSFSQ--GAGLGLSICQSLVERMGGQIGV 549

Query: 775 SSSDEGVTTINCRIP 789
           +S +   +      P
Sbjct: 550 NSREGEGSCFWFTHP 564


>gi|291279601|ref|YP_003496436.1| hypothetical protein DEFDS_1212 [Deferribacter desulfuricans SSM1]
 gi|290754303|dbj|BAI80680.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1099

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 165/382 (43%), Gaps = 22/382 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D   +     +      +     + +   +G + L+N     ++  +EN L        I
Sbjct: 321 DKTKELLEKEERLSMIFESAPNAILLVNENGELILANKRAEEVFGYKENELIGKKLSLFI 380

Query: 484 AATCSRYYNE---SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-- 538
                + Y     ++  D     I   D + K+ +G +       ++ SI  + N +   
Sbjct: 381 PDRFRKPYLNYLINEMNDNVNYPIKINDIQLKNKEGKI-----LYVDISIGKIQNKENKV 435

Query: 539 --MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    ++TD    E+    K  A  +A+++K++ +  +S+E+R+PL  +  F D+++ 
Sbjct: 436 ELIFIIKDITDRKLLEKE-RLKRIAAEEANKVKSNLLATISHEIRTPLNAVTTFLDIMEE 494

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            K   L ++    +E    SS IL+NL+ND+LDL+ +++G  KL  + I L DL+ ++  
Sbjct: 495 RKY--LKTEDKYLLEKTKYSSNILINLINDVLDLSKIESGNFKLVKNEISLIDLIIKITS 552

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714
                + E  +++ +     +      D  RL QI   ++ NA+ F+  G  ++ +   +
Sbjct: 553 IFENSLLEKKLKMYIDIPPDVPDKIKTDDLRLSQILINLIGNAIKFTDNGYILLSVNLEK 612

Query: 715 DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769
            N        +VK+ G  I E   KS+F  F+        +  G GLGL+IV+  +   G
Sbjct: 613 RNDKDIFLKITVKDTGIGIEEKNIKSIFLPFIQENVGDNKKYGGTGLGLAIVKLIVEKMG 672

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + I S     +     IP +
Sbjct: 673 GTIKIESKKGKGSKFIFDIPVE 694


>gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 774

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/323 (23%), Positives = 148/323 (45%), Gaps = 23/323 (7%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R IA       +     D    +  +F+   ++L+   + L  +V E +       Q ++
Sbjct: 188 RKIARRKFVTVDVGSRMDEIGILALNFNHMSRNLESLYKNLEVNVQERTHELESANQLLV 247

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +  ++++  E A         K    K+ F+  +S+E+R+P+  I+G  ++L  S   
Sbjct: 248 KAIAKSEAMAVEAA---------KGTRAKSQFLAAMSHEIRTPMNAILGMAEILADSH-- 296

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++VE +  S   LL+L+N+ILDL+ ++AG +      + L+ ++ +  +  A 
Sbjct: 297 -LDDEQRRFVEILQESGESLLHLINEILDLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAH 355

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
             H   + +    +  +    + D  RL QIF  ++ NA+ F+ +G  V+  +       
Sbjct: 356 AGHGKGLELAYNINRDVPVQLMGDPSRLQQIFVNLIGNAIKFTERGFVVVETSLVQPDMA 415

Query: 718 ------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                    F+VK++G  I +D   S+F+RF        R   G GLGLSI +S     G
Sbjct: 416 DNGGSLKIHFAVKDSGIGIEDDKLDSIFDRFTQADSSTTRKYGGTGLGLSICKSLCEAMG 475

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S     TT++  +P ++
Sbjct: 476 GKIWLESRKGFGTTVHMELPFEK 498


>gi|329851899|ref|ZP_08266580.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328839748|gb|EGF89321.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 873

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 123/656 (18%), Positives = 232/656 (35%), Gaps = 60/656 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLV----WHRD-QAGDILWANISYKKNTETEGIVFQKA 236
           T +     + +   +   D  + L     WH D +     W+   Y      +   +Q  
Sbjct: 86  TQEFLLAKSLLDRRQAYLDLAEKLAKVGHWHVDLKTTQSTWSPEVYA-IHGCDPAGYQPN 144

Query: 237 IGESRKLFKEEIKKRMISSSALEKN------FCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
           + +    +  + +  +  + A          F + +   + G+ +    V  L  F  AG
Sbjct: 145 LDDGISFYHPDDRASVAGAIAEALESKATFSFRKRLIRRDTGDVRIVDSV-GLGEFDHAG 203

Query: 291 IAI-------DVSKEITVNDQLTHTYEILHNLT----VAIAIFDQNRYLQFHNRSFVELW 339
            A+       DV+  +    +L  +      L       +A+FD     Q+ + S  E+ 
Sbjct: 204 QAVAIFGVFKDVTDLVAAQVKLEESEAQYRLLAERSNDIVALFDLEGTFQYLSPSIEEIL 263

Query: 340 EIDLAFLATNPSNDELL--EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
                      + D +   ++ R+       L  + WK  +   Y+            NG
Sbjct: 264 GYRPDSFVGRSTRDLIYAEDYDRTLAVFATYLRERDWKRPLRVRYR--------VRHANG 315

Query: 398 QTLHVIVTSNPR--------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
               +     P          G   +  ++T  V+   +            DH+   VA 
Sbjct: 316 ALRWMEANPRPIFDAAADRIIGFQDVVRDVTETVEALERIQASETRHRLLADHMPGMVAY 375

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           +      + +N A+   +      +  G  + ++        NE       A    SF+ 
Sbjct: 376 WDNTLVCRFANRAYEEWFGRTAEEM-IGLDMPSLMGPELFARNERYILGALAGAQQSFER 434

Query: 510 ERKSLQGTLELLSDSVL-------EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                 G         L             +                 A  AL    E  
Sbjct: 435 ALTKANGATGYTWAQYLPDRDENGAVRGFYVLVTDITALKTKELALEEANAALVVAREKA 494

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A E K +F+  +S+E+R+PLT+IIGF+ L+    L    S+ ++Y + I ++   LL 
Sbjct: 495 EVAAEAKANFLATMSHEIRTPLTSIIGFSGLMAD--LNPEGSENARYSQRIYSAGHNLLT 552

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
           L+N ILD A +DAG ++L  +   +  ++++V   +  +    ++ ++V     L S  +
Sbjct: 553 LINGILDHAKMDAGQLRLKPTACNVASIIDDVTGLLTVQAKAKSLDLRVDVADDLPSAML 612

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  R  QI   ++ NA+ F+ KG  V +KA    + +      +V + G  I  +    
Sbjct: 613 LDEIRFRQILQNLIGNAIKFTVKGH-VEVKAVPIASAEGATLRIAVSDTGPGISLEGQAQ 671

Query: 738 VFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F +F     +    + G GLGL I    + L  G +++ S+    T+    IP K
Sbjct: 672 LFKKFSQVDRKAGETQTGTGLGLLICRQLVELMDGAINVESTVGHGTSFIVDIPIK 727



 Score = 44.5 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 59/165 (35%), Gaps = 5/165 (3%)

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
             ++   R     A  RI+    +  ++ ET    +++    +  ++L D +  +V + D
Sbjct: 318 RWMEANPRPIFDAAADRIIGFQDVVRDVTETVEALERIQASETRHRLLADHMPGMVAYWD 377

Query: 211 QAGDILWANISYKK---NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
                 +AN +Y++    T  E I          +LF    +  + + +  +++F   ++
Sbjct: 378 NTLVCRFANRAYEEWFGRTAEEMIGLDMPSLMGPELFARNERYILGALAGAQQSFERALT 437

Query: 268 TLEHGNNKSY--KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
                   ++   +     +    G  + V+    +  +     E
Sbjct: 438 KANGATGYTWAQYLPDRDENGAVRGFYVLVTDITALKTKELALEE 482


>gi|313113963|ref|ZP_07799519.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623726|gb|EFQ07125.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 982

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 168/381 (44%), Gaps = 14/381 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTH 479
            + D E  Y    ++  +   ++ +   +      ++   +P    L       +     
Sbjct: 325 RRKDTEILYRD--ELFQKLSLNVDDVFLMLDAKTSKVDYVSPNVERLLGIPWKEVRQDAR 382

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                        + +  +   +      D     + T E      +          + +
Sbjct: 383 ALAALHPKDDPDRDKNFLEGLLSGQQREWDFEFEHRETKERRWFHNIAMGSEVEGRTKYI 442

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           L   + T   +  +AL++   A   A+  K++F+ ++S+++R+P+  IIGFT L  ++  
Sbjct: 443 LVLSDRTADRQVNQALSDAVAAAETANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNID 502

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               ++   Y+    ASS  LL+L+ND+LD++ +++G + L    + L+D+L+++K  ++
Sbjct: 503 DK--NRVKDYLAKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVS 560

Query: 660 TKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
            +++   + + + + D        D+ RL Q+   +LSNA+ F+  G TV ++       
Sbjct: 561 GQIYAKQLELYMDAMDVTDEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRVRQLAGA 620

Query: 714 -RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGG 770
            R  G + F VK+NG  + ++  K +F  F         + +G GLG++I ++ +++ GG
Sbjct: 621 VRGCGQYEFRVKDNGIGMSQEFAKKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGG 680

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + ++    +    R+P +
Sbjct: 681 TIEVQTAQGKGSEFIIRVPMR 701


>gi|119470568|ref|ZP_01613271.1| putative Sensory box sensor histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
 gi|119446269|gb|EAW27546.1| putative Sensory box sensor histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
          Length = 1263

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 96/546 (17%), Positives = 210/546 (38%), Gaps = 45/546 (8%)

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
           + +   +  +   N +    ++ +N   +  + +   K             +L+ +  ++
Sbjct: 367 QPWFTKIKLVFAKNRQLVDSLQDVNRELDEKLQLQSEKLTRSYQAKERHLALLNTMLNSV 426

Query: 320 AIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
             F    + +      N++F      D + L             R  +   E       +
Sbjct: 427 PDFIYFKNIDGSFLGCNKAFEAYIGCDQSALVGR----------RIQDITDEYEQISILE 476

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDLETKYN 430
           + +     + +   DT    + ++  + +           GT+ +  ++T Q        
Sbjct: 477 KQVLQNRSNVQQRVDT----DDKSYQLTIAPFYNEQQHLLGTMGIGRDITEQQQTLHALK 532

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                    I+  + GV +   D  I   N A R L+  ++           +       
Sbjct: 533 ASESKFRSAIEFAANGVVLLSLDQTILQVNKAARKLFTEQDVL---------VGEQLKLL 583

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           +++S   ++   +    DD+++    TL   +  S L+ S+  + + +   ++  +    
Sbjct: 584 FDDSQWQEIKTRLAQLLDDKKEVYHLTLARGNLTSWLQLSVSLVWDEKRDPSYYVIHLQD 643

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +  ALT+      +A   K+ F+ ++S+E+R+PL  ++G  D+L       L  +Q Q 
Sbjct: 644 VS--ALTKAKHNAERATLAKSRFIANLSHEIRTPLNAVLGLLDMLIEQ---GLTQRQIQQ 698

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +    ++  LL ++N +LD A V++   +L  +   + +L++           +  +  
Sbjct: 699 TDQAKQAAQSLLLMLNRMLDFARVESAQAELKLAPFTVVELVDICDSLTGPLCEQKGVEF 758

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724
            +  D  +  S + D  RL Q+   +L+NA+ F+  GS  +    ++         FSVK
Sbjct: 759 IIDVDPLIAPSLICDSIRLQQVLGNLLTNAVKFTHNGSITLKMELIEGDSTEQAICFSVK 818

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + GS I E     +F+ F        R  +GVGLGL+IV+  ++L GG ++++S      
Sbjct: 819 DTGSGINEADQLRLFDAFTQGDESSTRAHQGVGLGLAIVKHAVSLMGGEIAVNSEKGLGC 878

Query: 783 TINCRI 788
                I
Sbjct: 879 EFYFSI 884



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 83/231 (35%), Gaps = 29/231 (12%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  +  + T   +    H+++   + +S+   ++ ++  G  L  N +++      G   
Sbjct: 398 LQLQSEKLTRSYQAKERHLALLNTMLNSVPDFIYFKNIDGSFLGCNKAFEAYI---GCDQ 454

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFG 287
              +G   +   +E ++  I    + +N    V      ++KSY++          +  G
Sbjct: 455 SALVGRRIQDITDEYEQISILEKQVLQN-RSNVQQRVDTDDKSYQLTIAPFYNEQQHLLG 513

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             GI  D++++      L  +     +        + +   ++ +   N++  +L     
Sbjct: 514 TMGIGRDITEQQQTLHALKASESKFRSAIEFAANGVVLLSLDQTILQVNKAARKL----- 568

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
            F   +    E L+ L          +   W+E    + +  +  K+ +HL
Sbjct: 569 -FTEQDVLVGEQLKLL---------FDDSQWQEIKTRLAQLLDDKKEVYHL 609


>gi|86144789|ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222]
 gi|85837688|gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222]
          Length = 808

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 128/257 (49%), Gaps = 15/257 (5%)

Query: 542 FVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +    + +R + + L +  +    A+  K+ F+ ++S+E+R+P+  IIG + LL      
Sbjct: 215 YNQSIERIRQQYQELEKAKDTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM--- 271

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +  +Q +YV+ ++ SS  LL+L+NDILD + ++AG ++L    + +  +  +V+ +   
Sbjct: 272 DMPKEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
           K  +  ++ ++  D K+    + D  +L Q+ + ++ NA+ F+  G  V+L    +    
Sbjct: 332 KAEQKGLKFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEHGH-VMLSLRLEEVIE 390

Query: 718 -----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                   F V ++G  I ED  +SVF++F        R   G GLGL+I +  + L G 
Sbjct: 391 PEQKLRVKFEVTDSGIGIAEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGS 450

Query: 771 HVSISSSDEGVTTINCR 787
            + ++S     +T    
Sbjct: 451 KLELTSVVGKGSTFYFT 467


>gi|332712356|ref|ZP_08432283.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348830|gb|EGJ28443.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 965

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 110/590 (18%), Positives = 226/590 (38%), Gaps = 56/590 (9%)

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
              +Y + ++             R L   +IK  +     +      ++  +   + + Y
Sbjct: 378 CTDAYFEVSDQFLSAAADDPDHLRMLQALKIKCYICVPLRMGSQILGSIWFVRSDSGRRY 437

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY--------LQ 329
             + V  +   A  A   ++   +  +     + L  +   I I ++ +           
Sbjct: 438 NEIDVKLAEDLASRAALATENARLYREANQASDDLRQV---ITILNEQQKQLRTLHQLTN 494

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N+    L  +    ++      E+++ +         LN       +  V +  +T K
Sbjct: 495 LLNQRLTNLPNLLQEMVS------EVVKAIAGVEFCFIILNNSLGNSEVLRVIEGIDTQK 548

Query: 390 DTWH----LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             W     L  G    V +T         +          E +  T   +    I+ +  
Sbjct: 549 FQWEDILPLEQGLLSQVFLTGTSE----LIQRKGWDSRHPEEEVPTA--IYAVAIESVQA 602

Query: 446 GVAVFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF-AAI 503
           G     P G + + N     +L ++  N L+       IA   +R  NE     +  A +
Sbjct: 603 G-----PLGVLAIGNWEDPEALDQSGRNLLAAVGEQAAIAIDNARMINEQAAIAIDNARM 657

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           I + +++   L+                     Q  +      +  R + +L  +N  L 
Sbjct: 658 IKALEEQEARLE--------------------CQNSMLARQNRELERRDASLKLQNLQLL 697

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A  +K+ FV  +S+ELR+P+  IIGF+ LL   + GSL  +Q+  +E I  ++  LL L
Sbjct: 698 EAARLKSQFVSTISHELRTPMNAIIGFSQLLLRQRQGSLTHQQADIMERIVNNAQHLLTL 757

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           + D++DL+ ++A  ++L   ++ L+ L+ E          + ++ + + ++ K    + D
Sbjct: 758 IKDMIDLSKIEAVCLELTLESLHLDRLIKETINEFRCLAAQKDLGLYIQTNLKNPIVIND 817

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL QI   ++SN + F+  G   ++         + +V++ G  I E+  + +F  F 
Sbjct: 818 SLRLRQILVNLVSNGIKFTEMGRVEVVVKEISTDWLMLTVRDTGIGIAENDLEHIFEEFQ 877

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  R+  G GLGL+I ES + L  G +++ S     +T + + P +
Sbjct: 878 QIDQTTTRKYSGTGLGLAITESLVKLMQGTITVESKLGKGSTFHVKFPRR 927


>gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1170

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            +  +      T  ++++  L+ T E L++     +       Q             A+ 
Sbjct: 423 EEQSNALRESQTHMEEQQAELEQTNEQLAEQTEALA------RQRDQMDEKNQRLNEAQL 476

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ + L++A   K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q Q+   I
Sbjct: 477 MLEQRADELQRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPAGNLSEEQVQFARSI 536

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672
            ++   LL L+NDILD++ V+AG ++++    +L  L++ +K     +  E  +   V  
Sbjct: 537 YSAGNDLLTLINDILDISKVEAGKLEVHPELTILARLVDGMKSLFLPQAMEKALSFSVEL 596

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D    +   DRQRL QI   +L+NA  F+ KGS  +    RD G   F+V++ G  I  
Sbjct: 597 ADDLPPTLFTDRQRLEQILKNLLANAFKFTEKGSVTLRVEPRDGGMLAFAVRDTGIGIAP 656

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   ++F  F        RR  G GLGLSI     NL GG + + S+    +T    +P
Sbjct: 657 EQQAAIFEAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLP 715


>gi|220910672|ref|YP_002485982.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219867444|gb|ACL47781.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 810

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 124/242 (51%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +K +    A+  K++F+ H+S+ELR+PL  I+GF  +++   L  L  +Q + +  
Sbjct: 335 RQLEQKAQEAEAANHAKSAFLAHMSHELRTPLNAILGFAQVMERDPL--LTHQQQESLAI 392

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LL L+ND+L+++ ++AG + L+     L++LL  ++     +     + + V 
Sbjct: 393 INRSGEHLLGLINDVLEMSKIEAGQIVLHPGAFDLHELLQTLRDMFQGRAEAKQLALNVN 452

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNG 727
               L    ++D  +L Q+   +LSNA+ F+ +G TV L+AA  +        F+V + G
Sbjct: 453 LAADLPRYVISDEGKLRQVLINLLSNAVKFTDQG-TVTLEAAYQHHTGANYLTFAVADTG 511

Query: 728 SSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  +  + +F  F  +A       G GLGLSI   F++L GG +S +S     T    
Sbjct: 512 RGIAPEEQEHLFQPFFQSAAGLKTEEGTGLGLSISRQFVDLMGGQISANSQLGQGTVFKF 571

Query: 787 RI 788
            I
Sbjct: 572 EI 573


>gi|260642003|ref|ZP_05414261.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623855|gb|EEX46726.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 862

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/503 (18%), Positives = 201/503 (39%), Gaps = 21/503 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-------LATNP 350
           +  + +Q      I H++   +  +D + ++ F N S +++  +           +    
Sbjct: 366 QNKLVEQRNEFDNIFHSIRDGVITYDTDLHIHFTNSSLLKMLHLPSEAGGRVYEGMMAGS 425

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
             +   E     +K+ +Q+        I       E H D +   +G+ + +        
Sbjct: 426 IFNIYNEGQDILHKMLKQVASTGESVQIPQGSFMKEVHSDKYFPVSGEIVPIRSRGM-IT 484

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLS--NPAFRSLW 467
           G  +   N++ +   +  ++  +            E      P G +       +   + 
Sbjct: 485 GMAFSARNISDEEMQKRFFDMAMDESSIYPWQFDVETNCFIFPQGFLTRLGYEESVTIIS 544

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + +  R      ++ +     R     D          + D E +  +    +++    +
Sbjct: 545 REDMERTVHPDDLKEVKLLFDRALTGEDTNTRLNFRQRNADGEYEWWEYRSSVITGLTQD 604

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      +    ++     AE+ + E  +   + D++K++F+ ++S+E+R+PL  I
Sbjct: 605 ------SLYNILGVCQSIQRYKTAEQEMREARDKALQTDKLKSAFLANMSHEIRTPLNAI 658

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF+DLL  +  G    + +Q++  I+ +  +LL L+NDILDL+ +++G M+  ++   L
Sbjct: 659 VGFSDLLSDTS-GFTTEEVAQFIATINKNCGLLLALINDILDLSRIESGTMEFIFAEHNL 717

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             LL  V  S    M      +  + +G       D  RL Q+ + +++NA  F+  GS 
Sbjct: 718 PLLLKTVHDSQRLNMPPGVELLLRMPEGDKKYLQTDNVRLQQVVNNLINNAAKFTFSGSI 777

Query: 708 VI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
               +   + G     V++ G  I E+  + +F RF    +  Q  G GLGLSI ++ + 
Sbjct: 778 TFGYEEEEEPGYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GAGLGLSICQTIVE 835

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
              G +S++S     T    R+P
Sbjct: 836 RLKGTISVTSEVGKGTRFTVRLP 858


>gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 676

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 29/376 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           + +         +   +E +      GRI  +N  F  L   E   L        I    
Sbjct: 43  RISESEDRYRALVAATTEIIVQRDARGRITYANEDFARLLGREPIALIGSRDDLEILDRN 102

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV---- 543
           +               +    D  + L+  +         ++ + +P A    T      
Sbjct: 103 A---------------VEIGPDGVRRLEAQVRTADGRARWFAFVEMPVAHGDATHWLRAG 147

Query: 544 -NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT  V A R+     E    A   K+ F+  VS+E+R+PL  I+G  DL+  ++   L
Sbjct: 148 RDVTARVEAIRSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGTE---L 204

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q  YVE +  S   LL L++ +LD + ++AG + L      L  L   V + +A + 
Sbjct: 205 NPEQRTYVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALSEGVVELLAPRA 264

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGD 718
            +  I I +        + + D  R+ QI   +  NA+ F+ +G   V L  AR    G+
Sbjct: 265 QDKGIEIALDVAEDFPAAVLGDADRVRQILINLAGNAIKFTERGGVGVSLGFARAGTGGE 324

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + +V + G  IPE+    +F  F            G GLGL+I    +   GG +   S
Sbjct: 325 VVLAVADTGPGIPEERLPILFEEFEQGDGSASRSHEGTGLGLAITRRLVTRMGGRIEADS 384

Query: 777 SDEGVTTINCRIPSKE 792
                +T    +P  E
Sbjct: 385 RLGRGSTFRVLLPLAE 400



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 9/160 (5%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+L       E      +  ++S     ++ L  +   ++  RD  G I +AN  + +  
Sbjct: 23  RLLGTRRAEREAERLQDRIWRISESEDRYRALVAATTEIIVQRDARGRITYANEDFARLL 82

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
             E I     IG    L  E + +  +          E       G  + +  V +  + 
Sbjct: 83  GREPIAL---IGSRDDL--EILDRNAVEIGPDGVRRLEAQVRTADGRARWFAFVEMPVAH 137

Query: 287 GEAGI----AIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           G+A        DV+  +          E     +VA + F
Sbjct: 138 GDATHWLRAGRDVTARVEAIRSRDAALERAEAASVAKSRF 177


>gi|332530052|ref|ZP_08406002.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040525|gb|EGI76901.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
           19624]
          Length = 1320

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 132/709 (18%), Positives = 249/709 (35%), Gaps = 82/709 (11%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           +      +L++A    R       L    +N  A+ +  R +   A +R          L
Sbjct: 103 ITADEAARLTQALRNARG-----MLTQARENVDALLVHQRAARGDAEVRRAVTS-----L 152

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
            E     +     + +   + D L   ++       +     +          VF  A  
Sbjct: 153 VEVPDNLEPGIAEVEMLVSVSDPL---LFQWTAIARLA---TALHDYAGQMASVFTAAFV 206

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID---V 295
            +R L  +E+ +      A+E    E        +    +      SF  A   +D   +
Sbjct: 207 GNRPLLPQEMARIHYLRGAIESLRRE---LSLQRDRVMDQGGVEAESFQTAVRKVDELFM 263

Query: 296 SKEITVNDQLTHTYEI------------------LHNLTV--AIAIFDQNRY---LQFHN 332
            + + +  +L  T                     L  +     IAI   +     L   N
Sbjct: 264 QEGMNLLRELETTGRTSGNYGMNAVTLASEYGPRLDAIAELGNIAIQGVHGRIDALDARN 323

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           R  + L  +  AF         +L  +R +  L          + +    +         
Sbjct: 324 RRELLLTVVLAAFALLLLLGMYVLMRMRLSIPL----------DQVTQALEQIARGDQRV 373

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           HLP  +    I      G    + E    ++  E +       Q   ++    G+ +   
Sbjct: 374 HLPRARWRDEIGQVL--GALGSLQEATQARLAAEQEIKNAKDEQDAILNAADIGIVLL-K 430

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +  +   +  F  +++ E   +          AT   Y NE D  ++   +     ++R+
Sbjct: 431 NRTVVRCSAGFERMFRVEPGSMLGH-------ATREWYVNEEDYREVGEVLYAELAEDRQ 483

Query: 513 SLQG-TLELLSDSVLEY-----SIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKA 565
           + +  TL     +  E      +I P    +  +    ++T+  R E  L    +  ++A
Sbjct: 484 NRRELTLRRRDGTHFEAVLRGRAIDPNDLGRGSVWVIADITERKRMEGELRVARDRAQEA 543

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K+ F+ ++S+E+R+P+  IIG + LL  ++   L+ +Q  Y+  I  +   LL ++N
Sbjct: 544 AQAKSDFLANMSHEIRTPMNAIIGLSHLLLKTE---LSQRQHDYLRKIQQAGQHLLGVIN 600

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           DILDL+ ++AG + + ++   L   L+ V   IA K H   + +       +    V D 
Sbjct: 601 DILDLSKIEAGKLVIEHTEFQLEKALSNVANLIAEKAHAKGLELIFDIAPDVPQRLVGDS 660

Query: 685 QRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFN 740
            RL QI     +NA+ F+ +G  TV ++             +V + G  +  +  K +F 
Sbjct: 661 LRLGQILINYANNAVKFTERGEVTVQIRVRERTDHDVLLYCAVHDTGIGLSVEQQKRLFQ 720

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            F    +   R   G GLGLSI        GG V +SS     +T    
Sbjct: 721 SFQQADNSTTREYGGTGLGLSISLELAERMGGTVGVSSQLGRGSTFWFT 769


>gi|254418414|ref|ZP_05032138.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196184591|gb|EDX79567.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 647

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/496 (17%), Positives = 184/496 (37%), Gaps = 30/496 (6%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           +    + + +  +  A+F  +      N +           L T        +     + 
Sbjct: 14  VAQFCQAVEHSPIGTAVFGLDGVWLNGNAALRRFLGYSSDELRTV----NFRDVTHPDDL 69

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRGGTIWMF---E 417
             + + ++         Y+     +  +   +G        V +  +  G  ++     +
Sbjct: 70  DADLVLFEQLTSGRIPSYE----IEKRYIRKDGGVAWAARTVSLVRSAAGEPLFYISHVQ 125

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++  +   E +   L             G+     +      +P    L+ T    +   
Sbjct: 126 DIAGRKAAEAERLKLADRATLAARAAHIGIWELDLNTNALSWSPEMFDLFLTPAPDVLDL 185

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNA 536
               +      R   + D       ++   +   +   G +  +     LE  +   P+ 
Sbjct: 186 AFFTSFVLEDDRETLQRDTAAALNGLLLDTEFRIRRTDGEIRHIKGFGSLERGVGGAPD- 244

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +    +VT+  R         E    A   K+ F+  +S+E+R+P+  I+G T  ++ 
Sbjct: 245 RLVGANWDVTEMRRL-------AERAEAASRAKSQFLAVMSHEIRTPMNGILGMTQAMQA 297

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L +L   Q + ++ ++ S   LL ++NDILDL+ V+AG M+L      L  LL  ++ 
Sbjct: 298 DPLPAL---QRERLDIVAESGAALLTILNDILDLSKVEAGKMELESVAFDLGILLGNLRS 354

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           + A+   +  + + +      G +  D  RL QI S ++SN++ F+++G  + + A RD 
Sbjct: 355 TYASTADDQGLILALDLGDAAGLYRGDPTRLRQILSNLISNSLKFTARG-RIDIAARRDG 413

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
              + +V + G  +  ++   +FN F        R   G GLGLSIV     L  G + +
Sbjct: 414 QTLVLTVADTGVGMTTEVIARIFNPFAQADASTTRQFGGTGLGLSIVHELTRLMQGRIDV 473

Query: 775 SSSDEGVTTINCRIPS 790
            S     +     +P 
Sbjct: 474 DSRPGEGSRFTVVLPL 489


>gi|126442556|ref|YP_001062929.1| two-component sensor kinase protein [Burkholderia pseudomallei 668]
 gi|126222047|gb|ABN85552.1| two-component sensor kinase protein [Burkholderia pseudomallei 668]
          Length = 723

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/509 (17%), Positives = 196/509 (38%), Gaps = 31/509 (6%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 217 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCTDAVVGQPIE 276

Query: 353 DEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--- 408
             L      +   +         +    S+          +   +G  L V   + P   
Sbjct: 277 QVLTFRHAATQRVIDNPARVAVERRRTASL-----PPHTRFVGRSGGELPVDGNAAPTFD 331

Query: 409 ----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G + +  +++ +           +     ++     + + G DGRI L N    
Sbjct: 332 ANGKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAE 384

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+      +  G  I  +     R  + +     F +       E + L G     S+ 
Sbjct: 385 KLFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEF 443

Query: 525 VLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDA 561

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F
Sbjct: 562 RRPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKF 618

Query: 702 SSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL+
Sbjct: 619 RGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLA 678

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +  +  HGG + + S     TT +  +
Sbjct: 679 LCKRIVEHHGGRIFVESEPGQGTTFSFTL 707


>gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 922

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 96/490 (19%), Positives = 177/490 (36%), Gaps = 41/490 (8%)

Query: 339 WEIDLAFLATNPSNDELLEFLRSA----------NKLPEQLNWKTWKENIFSVYKSSE-T 387
           W+I    +  N +  E+  +                LPE  +             +   +
Sbjct: 267 WDIRTDRVERNATFHEVFRYTPEQTAPTGAWWVDRMLPEDRDRIARALEELIHGDADTWS 326

Query: 388 HKDTWHLPNGQTLHVIVTS---NPRGGT----IWMFENLTVQVDLETKYNTLVKVQGETI 440
            +   +  +G    V          GG     +    +LT +  +E+             
Sbjct: 327 AQYRVYRGDGSVARVFDRGAVLRDAGGRAIRMVGATVDLTERFRIESALQDREDRLRLAT 386

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS----------PGTHIRNIAATCSRY 490
                G      + R    + +   +   +E   +              +  + A   R 
Sbjct: 387 WAADVGTWRVDLETRYDTRDASLNRILGLDERETTQPVGDWLTRVHPEDLDAVIAMHERS 446

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTMLTFVNVTD 547
             E   +D+   ++ + D   + +     +++D     L  +   +   +        T+
Sbjct: 447 VRERCIYDIIHRVVRA-DGSIRWVHDRGRIVADRDGSPLFLTGAVVDITELKQLEHERTE 505

Query: 548 SVRAERALTEKNE----ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +R E+    ++E        A+ +K+ F+  VS+ELR+PLT I+G+  L+K   L    
Sbjct: 506 LLRREQQALAQSEKDRIRAEDANRMKDEFLATVSHELRTPLTAILGWARLIKDKALAP-- 563

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  Q +  I  ++     +V+DIL ++ +  G ++L    + L  ++     +I     
Sbjct: 564 ERVKQGMASIERNAHAQAQIVDDILTVSRIITGKLRLRTIAVDLAAVIEAAVDTITPTAK 623

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              I I+V     L     D  RL Q+   +LSNA+ F+ K   V ++  R +     SV
Sbjct: 624 AKEIEIRVEPGEGLSHVCGDPDRLQQVMWNLLSNAVKFTPKRGLVTVRVGRSDSQVAISV 683

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG- 780
            +NG  I       VF+RF            G+GLGL+IV   + LHGG V   S  EG 
Sbjct: 684 TDNGKGIATSFLPYVFDRFRQGDSSPTRAHGGLGLGLAIVRHLVELHGGTVEAESPGEGA 743

Query: 781 VTTINCRIPS 790
            +T    +P 
Sbjct: 744 GSTFTVTLPL 753


>gi|110598538|ref|ZP_01386807.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339842|gb|EAT58348.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 596

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/390 (21%), Positives = 158/390 (40%), Gaps = 26/390 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           +   +  G     F  ++ ++    K     +        + E + V    G I L NPA
Sbjct: 220 VDRQDEIGMLARAFNTMSDEI---KKMRRSEEWFRAVFSGIREAIIVTDAAGDIILVNPA 276

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              +++ E                  R+ ++S   +LF+ +  S     K          
Sbjct: 277 ASRIFRIEGAMFKSRPL---------RHLSDSRLEELFSRVHKSHLALIKEEMAFETTKG 327

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             +++ S +P+   +     V V + +   R L          + ++  FV  VS+ELR+
Sbjct: 328 RRIMQISSMPVMQGERFDGTVFVLNDITKLRNL----------ERVRRDFVSSVSHELRT 377

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT+I G+T+ L    +       S +++ I   S  L  LVND+LDL+ +++G ++ ++
Sbjct: 378 PLTSIKGYTETLLEGAMHE-PEHASAFLKIILQESEQLTALVNDVLDLSRIESGRIEYHF 436

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           S + L  ++ +    +   + +  +R+ V     +    AD   L  +   +L NA+ + 
Sbjct: 437 SAVDLRTVIAKSVDQLRLALEKKAVRLDVSIADDMPQLHADSGYLEIVVRNLLDNAIKYV 496

Query: 703 S-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
             +   + + A R+       V++NG  I +     +F RF        R   G GLGL+
Sbjct: 497 DAEHGKIRISAFRNGDFVQLDVEDNGIGISKQDLGRIFERFYRVDKARSRELGGTGLGLA 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IV+  +  H GHV + S     +  +   P
Sbjct: 557 IVKHIVLAHKGHVEVRSRVSQGSVFSVLFP 586



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 89/322 (27%), Gaps = 27/322 (8%)

Query: 118 WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL--RILSLDGIY 175
           WL+       +         G + +L         I ++GRV G       ++  +    
Sbjct: 62  WLEADSADAWADRV------GSALELRVT-----LIDLQGRVIGDSYIPAKKLSVMQNHR 110

Query: 176 SE---LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           +    +A       + S +    K     +   V        + +A   Y      +GI 
Sbjct: 111 NRPEVVAALQKGYGEESRYSQTVKEQMLYIAVPVGRPKPRALLRFAKPLYDNGIFEKGIR 170

Query: 233 FQKAIGESRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
                G    LF   +   + +   +   +N  E        +      V   +  G   
Sbjct: 171 KSIEQGLFFALFFSFVAGLLGAFFLARPLRNLAEIARKRLRDDLSGTIPVDRQDEIGMLA 230

Query: 291 IAIDV--SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            A +    +   +         +   +  AI + D    +   N +   ++ I+ A   +
Sbjct: 231 RAFNTMSDEIKKMRRSEEWFRAVFSGIREAIIVTDAAGDIILVNPAASRIFRIEGAMFKS 290

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            P        L        + +    KE +               +P       ++    
Sbjct: 291 RPLRHLSDSRLEELFSRVHKSHLALIKEEMAFETTKGRRIMQISSMP-------VMQGER 343

Query: 409 RGGTIWMFENLTVQVDLETKYN 430
             GT+++  ++T   +LE    
Sbjct: 344 FDGTVFVLNDITKLRNLERVRR 365


>gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 838

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 181/428 (42%), Gaps = 34/428 (7%)

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGT-IWMFENLTVQVDLETKYNTLVKVQGE-------- 438
           H   W +  G    V+      G   I +  +       + +   LV ++          
Sbjct: 269 HGLAWMIGLGTLAAVVGIGVLTGALAIRVRRDRLAAKRQQRRLEELVALRTADLQQLLAF 328

Query: 439 ---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               ++    G+ V+  DG+    N +F  +   ++  L        +       + E+ 
Sbjct: 329 NETILETSPVGIGVYHQDGQCISVNDSFCRIIGGDKEALQS------LNFRHLDSWREAG 382

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA---QTMLTFVNVTDSVRAE 552
             D   A + +        +       D  +E   +          +L   ++T+  + E
Sbjct: 383 MLDHAVATLETGAPSHLECRTVTSFHKDIWIECHFVRFVRDGIDHLLLLLADITERKQVE 442

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            AL         A+  K+ F+ ++S+E+R+PL  ++G   L++T+   SL+++Q +Y+  
Sbjct: 443 AALRNAKRVAETANVAKSEFLANMSHEIRTPLNGVLGMLQLMRTT---SLDAEQREYLAA 499

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  L  L++DILDL+ ++AG + L  +   + DL   + +  +       +R++  
Sbjct: 500 AILSTQRLTGLLSDILDLSRIEAGKLTLQEADFKVADLKASILEVFSLVARNKGLRLEFS 559

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGD--FIFSVKN 725
           +D  + +    D  R+ QI   ++ NA+ F++ G  V + A     R +G    +FSV++
Sbjct: 560 TDAAMPARLAGDETRIRQILFNLVGNALKFTTTGG-VDVAAFALPPRADGRLPVVFSVRD 618

Query: 726 NGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+     +   FV    A    R G GLGLSIV   + + GG ++I + + G TT
Sbjct: 619 TGVGIPDARLADIVEPFVQGLGAPYAPREGAGLGLSIVRRLVRMMGGELAIDNREGGGTT 678

Query: 784 INCRIPSK 791
           I C +P +
Sbjct: 679 IYCALPLR 686



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 7/144 (4%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +   +   L     IL    V I ++ Q+      N SF  +   D   L +       L
Sbjct: 318 RTADLQQLLAFNETILETSPVGIGVYHQDGQCISVNDSFCRIIGGDKEALQSLNFRH--L 375

Query: 357 EFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           +  R A  L   +   +T   +       +  HKD W     +   V    +     + +
Sbjct: 376 DSWREAGMLDHAVATLETGAPSHLECRTVTSFHKDIWI----ECHFVRFVRDGIDHLLLL 431

Query: 416 FENLTVQVDLETKYNTLVKVQGET 439
             ++T +  +E       +V    
Sbjct: 432 LADITERKQVEAALRNAKRVAETA 455


>gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 549

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 150/369 (40%), Gaps = 41/369 (11%)

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              +G I+            +   L     + +   TC +  N     D+    +T+F D
Sbjct: 38  MDGEGTIEQV-----EYEPPDLILLDVNMPVIDGFETCKKLKNNPISKDIPIIFMTAFAD 92

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---- 565
               ++G    LS   ++Y   P    + +             + L E+N  L++A    
Sbjct: 93  INHKIKG----LSLGAVDYIPKPFEQEEVLARVRLHLKLYFLTKTLAEQNAYLQEAKEKA 148

Query: 566 ---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-------LGSLNSKQSQYVEYISA 615
              ++ K+ F+ ++S+ELR+PL  I+G+  +L+            +L +KQ + ++ I  
Sbjct: 149 EVANQAKSEFLANMSHELRTPLNGILGYAQILQRDAALAASKGERNLTAKQLEGLKIIQK 208

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S + LL L+NDILDL+ ++AG M L  +   L   L EV   I  +  E NI ++   + 
Sbjct: 209 SGSHLLTLINDILDLSKIEAGKMALYPTEFNLLTFLEEVVGIIRMRASEKNIVLRFEQNT 268

Query: 676 KLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG---------------D 718
            L +   AD +RL Q+   +L NA+ F+ +G+    +    D                  
Sbjct: 269 NLPTGVKADEKRLRQVLINLLDNAVKFTDQGNVTFNVGVIEDQNPTSLDQGKDSQIQHRT 328

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F V + G  I     +++F  F      + +  G GLGL+I    +   G  +++ S 
Sbjct: 329 IRFEVIDTGIGISPQQLETIFQPFEQTGDSKYRAAGTGLGLAISRQLVEFMGSQLNVKSE 388

Query: 778 DEGVTTINC 786
               +    
Sbjct: 389 LIKGSMFWF 397


>gi|212694788|ref|ZP_03302916.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
 gi|212662642|gb|EEB23216.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
          Length = 1045

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 136/246 (55%), Gaps = 6/246 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +    E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L T        +
Sbjct: 663 NERKTMENELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAT---AEEEQE 719

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + +Y+  I +++T+LL L++DILDL+ ++AG +  +YS + LND+L+E++  +  +    
Sbjct: 720 KQEYINIIESNNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETC 779

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I++             ++ RL+Q+ + +L+NA  F+S+GS +         +  F VK+
Sbjct: 780 GIQLIAHKGLPSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLCGRELYFYVKD 838

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP D   S+F RFV      Q  G GLGLSI ++ +   GGH+ + S +E  +T  
Sbjct: 839 TGCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGHIGVESEEEKGSTFW 896

Query: 786 CRIPSK 791
             IP +
Sbjct: 897 FTIPYQ 902


>gi|218441345|ref|YP_002379674.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218174073|gb|ACK72806.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1267

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 252/694 (36%), Gaps = 80/694 (11%)

Query: 151  CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
                 +G+V G  A +         ++ ++       L      F+++ +S   ++W  D
Sbjct: 600  PRFDSQGKVEGFVALI---------NDFSDRKRMEDNLRESEERFRMMANSSPVMIWLTD 650

Query: 211  QAGDILWANISYKKNTETEGIVFQKAIGES------RKLFKEEIKKRMISSSALEKNFCE 264
            +    ++ N ++   T   G   ++ +GE        +     ++  + + +  +    +
Sbjct: 651  ETAGCIFVNQTWLNLT---GRTLEQELGEGWTDNIHPEDLSYVLEDYLQAFNTRQPYEMQ 707

Query: 265  TVSTLEHGNNKSY------KIVRVLNSFGEAGIAIDVSKEITV-------NDQLTHTYEI 311
                  +G+ +        +        G  G   DV++              L    ++
Sbjct: 708  YRVKSANGDYRWILERGSPRFTPEGKFSGYIGSCTDVTERQQAIQALQQSEQALQQHAQM 767

Query: 312  LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
            L     +I I D N  + + N     L+     +  T     ++   L++    P+   +
Sbjct: 768  LDLANDSIIIRDLNEAIAYWNHGAERLYG----WTKTEAEGHQIHNLLKTIFPQPKTEIY 823

Query: 372  KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE---NLTVQVDLETK 428
                   +   + ++T +D   +         +  N +G  I + E   ++T +  +E  
Sbjct: 824  SILTRQGYWQGELTQTKQDGSQIIVSS--RWTLQYNSQGQAIAILEISDDITERKQVEAA 881

Query: 429  YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                 +      +  + G+++   DGR    N     +    +  L   T  ++I     
Sbjct: 882  LRVSEERFRAIFEQAAVGMSLLNLDGRWLRVNQKLCEITGYTQEELLQKT-FQDITYPED 940

Query: 489  RYYNESDGWDLFAAIITSFDDERK---------SLQGTLELLSDSVLEYSIIPLPNAQTM 539
               + +    L A  I ++  E++          ++ T+ L+ D     S   +P  Q  
Sbjct: 941  LETDLNYVSKLLAGEIETYSLEKRYIRQDKSLIWVEITVSLMWDQTQSKSSSKVPKPQYF 1000

Query: 540  LTFVNVT--------DSVRAERALTEKNE--------------ALRKADEIKNSFVQHVS 577
            +T +           +  +A+ AL E+ +               L+K ++  + F   VS
Sbjct: 1001 ITVIEDISEAKRGEIERQQAQIALQERAKELTSLNTVLASTTTMLQKRNQELDQFAYVVS 1060

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            ++L++PL  I   ++ ++    G L  +  + ++ +      + NL+N +L+ + V  G 
Sbjct: 1061 HDLKAPLRAIANLSEWIEEDLEGQLPPENQEQLQLLRQRVHRMENLINGVLEYSRV--GR 1118

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             +    T  +++LL EV  S++           V     + +    +  L QIFS ++SN
Sbjct: 1119 KETKIETFSVDELLTEVIDSLSP-----PPTFTVEIGEGMPTLTTSKVFLAQIFSNLISN 1173

Query: 698  AM-DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
             +  +      + ++    +  + F+V +NG  I  +  + +F  F +          G+
Sbjct: 1174 GINHYPGSDGHLWIRVKELDKFYEFAVADNGKGIAPEYHQRIFGIFQTLEKSENLESTGI 1233

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GL+IV+  I   GG++ + S     TT     P 
Sbjct: 1234 GLAIVKKIIEYQGGNIKVESELGQGTTFRFTWPK 1267



 Score = 89.2 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 84/566 (14%), Positives = 185/566 (32%), Gaps = 67/566 (11%)

Query: 51  LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI--PQT 108
             +++       SE+     ++  L    N   + W    E  EI+        I     
Sbjct: 237 TERRLAALQLKESEL-----RFRQL--AENISKVFWISDLEKSEILYVSPAYERIWGKSC 289

Query: 109 DTDLLSFENWLK---FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRV--SGSC 163
           ++      +WL+        +++ A  +++   Q F      ++   I+ +G++   G+ 
Sbjct: 290 ESLYQYPSSWLEAVHPEDRNRVNLAISQMKNGEQDF-----KEDYRIIRPDGQIRWIGAR 344

Query: 164 AFL-------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
            F        R   + G   ++ E     + L      F+ L +S  F V   + AG + 
Sbjct: 345 TFPIYDENGKRYR-IAGFAEDITERKRAEQALQESERRFRRLVESNLFGVAFANIAGRLH 403

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
           +AN  Y           +  + +  ++   E         ALE+   + V+T        
Sbjct: 404 YANDYYLNMVGYSREDLENGLIQWNQMTPPEWLDLDFK--ALEEMKVKGVTTPFEKEYLR 461

Query: 277 YKIVRVLNSFGEA-------------GIAIDVSKEITVNDQLTHTYEILHNLTVA----I 319
               RV    G A             G  +D+++       L    E L  +  A    I
Sbjct: 462 KDGSRVPILIGAAFLDEPYEIAQEMIGFFLDLTRLKETEKALQQREEELRLIADATPALI 521

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
           A  D ++  +F+NR + E + + +  ++     + L + L           ++  +  I 
Sbjct: 522 AYVDSHQRYRFNNRRYEEWFGVPIDQISGKTLQEFLGDSL-----------YEKVRPRIE 570

Query: 380 SVYKSSE-THKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNT 431
            V K  +  +++   LPN ++ ++     PR        G + +  + + +  +E     
Sbjct: 571 KVLKGEQVIYEEEITLPNSESRYIRANYMPRFDSQGKVEGFVALINDFSDRKRMEDNLRE 630

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +      +     + +          N  + +L      +        NI      Y 
Sbjct: 631 SEERFRMMANSSPVMIWLTDETAGCIFVNQTWLNLTGRTLEQELGEGWTDNIHPEDLSYV 690

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            E                  KS  G    + +            +  + +  +VT+  +A
Sbjct: 691 LEDYLQAFNTRQPYEMQYRVKSANGDYRWILERGSPRFTPEGKFSGYIGSCTDVTERQQA 750

Query: 552 ERALTEKNEALRKADEIKNSFVQHVS 577
            +AL +  +AL++  ++ +  + + S
Sbjct: 751 IQALQQSEQALQQHAQMLD--LANDS 774



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 61/452 (13%), Positives = 142/452 (31%), Gaps = 52/452 (11%)

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
              T+++   +I          + +L +      LA   LK  +L      F+ L +++ 
Sbjct: 209 NIFTESNQFYEIRAYPVSEGLAVYLLDVTERR--LAALQLKESELR-----FRQLAENIS 261

Query: 204 FLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
            + W  D +  +IL+ + +Y++          +      +    E + R+  + +  KN 
Sbjct: 262 KVFWISDLEKSEILYVSPAYERIWGKSCESLYQYPSSWLEAVHPEDRNRVNLAISQMKNG 321

Query: 263 CET-----VSTLEHGNNKS-----YKIVRVLNSFG-EAGIAIDVSKEITVNDQLTHTYEI 311
            +            G  +      + I          AG A D+++       L  +   
Sbjct: 322 EQDFKEDYRIIRPDGQIRWIGARTFPIYDENGKRYRIAGFAEDITERKRAEQALQESERR 381

Query: 312 LHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              L       +A  +    L + N  ++ +       L        L+++ +       
Sbjct: 382 FRRLVESNLFGVAFANIAGRLHYANDYYLNMVGYSREDLENG-----LIQWNQMTPPEWL 436

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLT 420
            L++K  +E    V   +   +  +   +G  + +++ +             I  F +LT
Sbjct: 437 DLDFKALEE--MKVKGVTTPFEKEYLRKDGSRVPILIGAAFLDEPYEIAQEMIGFFLDLT 494

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
              + E       +      D     +A      R + +N  +   +    +++S     
Sbjct: 495 RLKETEKALQQREEELRLIADATPALIAYVDSHQRYRFNNRRYEEWFGVPIDQIS----- 549

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQT 538
                T   +  +S    +   I      E+   +  + L +     +  + +P  ++Q 
Sbjct: 550 ---GKTLQEFLGDSLYEKVRPRIEKVLKGEQVIYEEEITLPNSESRYIRANYMPRFDSQG 606

Query: 539 -----MLTFVNVTDSVRAERALTEKNEALRKA 565
                +    + +D  R E  L E  E  R  
Sbjct: 607 KVEGFVALINDFSDRKRMEDNLRESEERFRMM 638



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 109/326 (33%), Gaps = 38/326 (11%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNR-YLQF 330
            Y+I     S G A   +DV++      QL  +      L   I+    I D  +  + +
Sbjct: 217 FYEIRAYPVSEGLAVYLLDVTERRLAALQLKESELRFRQLAENISKVFWISDLEKSEILY 276

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            + ++  +W      L   PS    LE +      PE  N      +     +       
Sbjct: 277 VSPAYERIWGKSCESLYQYPS--SWLEAVH-----PEDRNRVNLAISQMKNGEQDFKEDY 329

Query: 391 TWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
               P+GQ   +   + P       R       E++T +   E       +     ++  
Sbjct: 330 RIIRPDGQIRWIGARTFPIYDENGKRYRIAGFAEDITERKRAEQALQESERRFRRLVESN 389

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-- 501
             GVA     GR+  +N  + ++       L  G     +         E    D  A  
Sbjct: 390 LFGVAFANIAGRLHYANDYYLNMVGYSREDLENG-----LIQWNQMTPPEWLDLDFKALE 444

Query: 502 -----AIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-NVTDSVRAER 553
                 + T F+ E  RK       L+  + L+    P   AQ M+ F  ++T     E+
Sbjct: 445 EMKVKGVTTPFEKEYLRKDGSRVPILIGAAFLDE---PYEIAQEMIGFFLDLTRLKETEK 501

Query: 554 ALTEKNEALRKADEIKNSFVQHV-SY 578
           AL ++ E LR   +   + + +V S+
Sbjct: 502 ALQQREEELRLIADATPALIAYVDSH 527


>gi|167840004|ref|ZP_02466688.1| sensory box histidine kinase [Burkholderia thailandensis MSMB43]
          Length = 709

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 195/508 (38%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   ++  +  A     P  
Sbjct: 210 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEQMTSLAAAAAVGQPIE 269

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L     +  ++ +       +    +           +    G+ L V   + P    
Sbjct: 270 QVLTFRHAATQRVIDNPARVAVERKRTATL----PVHSRFVDRGGRELPVDGNAAPTFDA 325

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 326 KGKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPNAMIMVGRDGRIVLVNSQAEK 378

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F         E + L G      +  
Sbjct: 379 LFGYARGDM-IGHGIDMLVPERFRAGHSAYRGAFFGKPDARPMGEGRDLFGLRRDGGEFP 437

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 438 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 497

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 498 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 555

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +     L+E  ++++  + E+  +I      +L        +L+ +   ++ NA+ F 
Sbjct: 556 QPVDGERALDEALRNLSAAIRESGAQIT---HDRLPVVHGIAAQLVLLLQNLIGNAIKFR 612

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           SK     + L+A   +  ++F V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 613 SKDRVAQIHLEADARDDAWVFRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 672

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 673 CKRIVEHHGGRIFVESEPGRGTTFSFTL 700


>gi|237712910|ref|ZP_04543391.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409649|ref|ZP_06086189.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647129|ref|ZP_06724733.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807884|ref|ZP_06766665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229447029|gb|EEO52820.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352502|gb|EEZ01602.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637546|gb|EFF55960.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294444882|gb|EFG13568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 583

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 176/376 (46%), Gaps = 20/376 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             ++ E +   L++     +++++ G+A    D  ++  N +  S   + E         
Sbjct: 73  ELLESEQRMIQLIRQNELVLNNINSGLAYIANDYIVQWENISLCSKSLSYEAYKKG---- 128

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--- 537
             +    +          +      S   E         L +  V+E    P+ N Q   
Sbjct: 129 -ELCYLTAHNRTTPCENCVMQRARRSGQVE----SILFNLDNKHVIEVFATPIFNEQGDV 183

Query: 538 --TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              ++   +VT+       L +      ++D++K++F+ ++S+E+R+PL  I+GF+DLL 
Sbjct: 184 DGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLM 243

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +     ++ ++++ I+A++ +LL L+NDILDL+ ++AG ++L Y    L    NE+ 
Sbjct: 244 ---VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELA 300

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S+  ++    +R+  ++  +  +   D+ RL QI +  ++NA+ ++SKG T+ +   + 
Sbjct: 301 ASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG-TIEMGYEKI 359

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +GD    V++ G  IPED    VF+RF       Q  G GLGLSI ++ +    G +   
Sbjct: 360 DGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLSICKAIVEACRGEIGFE 417

Query: 776 SSDEGVTTINCRIPSK 791
           S  +  +     +P +
Sbjct: 418 SEFDKGSLFWAVLPCQ 433


>gi|156977382|ref|YP_001448288.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156528976|gb|ABU74061.1| hypothetical protein VIBHAR_06169 [Vibrio harveyi ATCC BAA-1116]
          Length = 1225

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 155/373 (41%), Gaps = 20/373 (5%)

Query: 422 QVDLETKYNT-LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           + + ET+      K     +D +   + +   + +  L+N  F ++              
Sbjct: 555 RKEYETQIRQKQNKWLSSVLDQMPNKILISDENNKQILANKPFINMLSRCNVDKGITEQE 614

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R      +R    +D      ++ +  D   +  Q TL           + P    Q  +
Sbjct: 615 REQVLDLTRECVRTDSESTETSLCSLGDKHYRVRQQTL-----------LHPEEGTQYRM 663

Query: 541 TFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           T  +   +  + E AL   N    +A E +  F+  VS+ELR+P+  ++G  +LL+    
Sbjct: 664 TVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLMELLEQDV- 722

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +  + ++    S+  L   VNDILD + +DA  ++L+     +   L    +S  
Sbjct: 723 --ERKESKELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQELGATLRSFE 780

Query: 660 TKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +   ++  ++       + VA D  R+ QI + +LSNA+ F+ +G  VI+        
Sbjct: 781 KIIERKSLAFELNWTPTPHALVALDWLRVNQIINNLLSNAVKFTKEG-KVIVSVHVSPNQ 839

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  +      ++F  FV       RR  G GLG+SIV+S +++  G + + S
Sbjct: 840 LEFKVQDTGCGMNNAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLVDIMEGTIEVDS 899

Query: 777 SDEGVTTINCRIP 789
             E  TTI  R+P
Sbjct: 900 QTEQGTTITVRLP 912



 Score = 41.5 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 20/174 (11%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTY--EILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEI 341
           G     I   +  T   Q  + +   +L  +   I I D+N      N+ F+ +     +
Sbjct: 547 GHLTRTIKRKEYETQIRQKQNKWLSSVLDQMPNKILISDENNKQILANKPFINMLSRCNV 606

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           D          +++L+  R   +   +    +        Y+     +   H   G    
Sbjct: 607 DKGITEQE--REQVLDLTRECVRTDSESTETSLCSLGDKHYR--VRQQTLLHPEEGTQYR 662

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           + V           F++++     ET          + I+     +AV   + R
Sbjct: 663 MTV-----------FDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELR 705


>gi|237746159|ref|ZP_04576639.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229377510|gb|EEO27601.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 1090

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 112/664 (16%), Positives = 235/664 (35%), Gaps = 66/664 (9%)

Query: 185 CKKLSNHISVFKVLFDSLD--FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG---- 238
            + LS      +++   L    +V + D+     W +    +    E     +A      
Sbjct: 150 QRLLSEKEQQIELMLHQLPGGMMVCYPDEKFTTKWISDGLCRMLGYESAAAYRAAVNSCA 209

Query: 239 ---ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFGEAGI 291
                    +   +     +S    +    +   + G      +      V N    +  
Sbjct: 210 GFIHPDDFVEMRDRVSASLASGDSYSGEYRIVRPDGGVRWVLDLGKRFTDVDNETVVSCF 269

Query: 292 AIDVSKEITVN-----------DQLTHTYEILHNLTVAIAI--FDQNRYLQFHNRSFVEL 338
             D+++ +               Q     ++ + +   I     D    +   NRS  E+
Sbjct: 270 ITDITERVEREVALEKANRNISRQAAFLSQLYNTVPCGIVQISTDSAHRVINANRSAWEI 329

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           +            ND  +      ++   +   +  +      Y+     KD        
Sbjct: 330 YGYTEEEYCRQ-LNDPFVTVSDGDSEWIHRTVDELGRHGGSVFYEREALKKDGASCWVSV 388

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            +  ++  +       +F +++    L+ +     + Q   I++ S   A++     I  
Sbjct: 389 MMERLINHDGIEVIQVVFSDISEIKRLQKE-----QEQERLIENRSLRTAIYTAYQLIVR 443

Query: 459 SN---PAFRSLW-KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +N     + +L  +   + + P  H  +     +   + S   D      ++   ER+  
Sbjct: 444 ANLTQDTYEALNERDYIDEIDPYGHYSDQLRKTAEGLHPSYRDDFIHTF-SADSLERRFA 502

Query: 515 QGTLELLSD----------SVLEYSIIPLPNAQTMLTFV---------NVTDSVRAERAL 555
            G  E+  +            L  + I + N  +                T+ +  E+ L
Sbjct: 503 SGEQEVYMECQRMGRDRVYHWLSVTCIQVENPYSDEVLCILLLKVLDDQRTEKMLQEQVL 562

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                + + A++ K+ F   +S+++R+P+  IIG + +       +   +  +    I  
Sbjct: 563 RNALASAKAANQAKSDFFSRMSHDIRTPMNAIIGMSAI--GQLKMNEPERVRECFSKIDV 620

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL+L+NDILD++ +++G M L  +    + L++++   I  +  EN +  ++   G
Sbjct: 621 SSRYLLSLINDILDMSKIESGKMILTNARFDFSGLISQINTIIYPQALENRLSCRIHHVG 680

Query: 676 KLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNG--DFIFSVKNNGSS 729
            L  F + D  R+ QI   +LSNA+ F+  G  + L   ++ R NG     F + + G  
Sbjct: 681 VLERFYIGDALRINQILMNLLSNALKFTPAGGKIDLDIGESRRANGFAYVQFRISDTGIG 740

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +  K ++  F          + G GLGLSIV S + L GG + + S     T     
Sbjct: 741 MSPEFMKRLYVPFEQETTDIARNKIGSGLGLSIVHSMVQLMGGTIEVQSEKNRGTVFTVT 800

Query: 788 IPSK 791
           +P K
Sbjct: 801 LPLK 804


>gi|27378182|ref|NP_769711.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351329|dbj|BAC48336.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 634

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 157/385 (40%), Gaps = 25/385 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E +Y  L +       ++S+ ++    +G ++  +PA  ++      +L        +
Sbjct: 208 REEERYRLLAR-------NMSDVISRHRRNGAVQFISPAAEAMLGMPVAQLHGHGLFDRV 260

Query: 484 AATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPL--------- 533
                  Y  +        + +  F   R+        +    +E    PL         
Sbjct: 261 HVADRPAYLTALSDAARGNVRSVEFRLRREPTGSERGQVDFIWVEMRCRPLDQDLGRQDI 320

Query: 534 -----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                   + +    +VTD   +E+AL +   A   AD  K  F+  +S+ELR+PL  II
Sbjct: 321 DRDVARETEVVAVMRDVTDRKLSEQALDQARSAAEAADAAKTRFLATMSHELRTPLNAII 380

Query: 589 GFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           GF+D++   +   L + Q  +Y + I+ S   LL++VN ILD++ +++G  ++       
Sbjct: 381 GFSDMIAQEQALMLGAAQRKEYAQVINDSGQHLLSVVNGILDMSKMESGNFEIASEPFAP 440

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              L      +A K  EN I +   +   L     D +   QI   +++NA+ F+ +G  
Sbjct: 441 RASLMHCCNLLALKARENGIDLITDAPQDLPVMTGDPRAFKQIVLNLVANAIKFTERGGQ 500

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
           V + AA         + + G  I  D  K +   F         +  G GLGLSIV+S +
Sbjct: 501 VSVSAAVSGSHLTLRISDTGVGIAPDDLKRIGAPFFQAGKTYQRRHEGTGLGLSIVKSLV 560

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            LH G +++ S     T +  ++P 
Sbjct: 561 ALHLGDLTVQSRLGEGTAVTVKLPL 585


>gi|167906877|ref|ZP_02494082.1| two-component sensor kinase protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 709

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 88/509 (17%), Positives = 197/509 (38%), Gaps = 31/509 (6%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 203 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 262

Query: 353 DEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--- 408
             L      +   +         +    S+          +   +G  L V   + P   
Sbjct: 263 QVLTFRHAATQRVIDNPARVAVERRRTASL-----PPHTRFVGRSGGELPVDGNAAPTFD 317

Query: 409 ----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G + +  +++ +           +     ++     + + G DGRI L N    
Sbjct: 318 ANGKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPTAMIMVGCDGRIVLVNSQAE 370

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+      +  G  I  +     R  + +     F +       E + L G     S+ 
Sbjct: 371 KLFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEF 429

Query: 525 VLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+
Sbjct: 430 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 489

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++  
Sbjct: 490 EPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDA 547

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F
Sbjct: 548 RRPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKF 604

Query: 702 SSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            SK     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL+
Sbjct: 605 RSKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLA 664

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +  +  HGG + + S     TT +  +
Sbjct: 665 LCKRIVEHHGGRIFVESEPGQGTTFSFTL 693


>gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 847

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 18/255 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R L    +   +A   K++F+  +S+E+R+P+  +IG T LL+ +    L+ +Q QY 
Sbjct: 315 ARRELAAARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLEAT---DLDERQRQYA 371

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +S+++  L+ ++NDILD + V+AG + L      L  ++ EV + IA       + + 
Sbjct: 372 EGVSSAANALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEVAELIAEPAQSKGLELL 431

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG--------- 717
                +L      D  RL Q+   + SNA+ F+++G  ++   L+A+  +G         
Sbjct: 432 AYCSPELPTCLRGDPSRLRQVLLNLASNAVKFTARGEVLVRASLEASLQDGPEAGAEAGV 491

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F V + G  + E   + +F  F        RR  G GLGL+I E  +   GG + + 
Sbjct: 492 VVRFEVTDTGIGVEEADRERLFEPFSQADSSTTRRYGGTGLGLAISEHLVTAMGGQIGVD 551

Query: 776 SSDEGVTTINCRIPS 790
           S     +T    +P 
Sbjct: 552 SRPGLGSTFWFTLPL 566


>gi|197334363|ref|YP_002156093.1| sensor protein LuxQ [Vibrio fischeri MJ11]
 gi|197315853|gb|ACH65300.1| sensor protein LuxQ [Vibrio fischeri MJ11]
          Length = 692

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 124/255 (48%), Gaps = 6/255 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +++   +  + +        KA++ K+ F+  +S+E+R+PL +I+G  D+   S   
Sbjct: 300 TAKDISARKKRIKDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDIFHGSL-- 357

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q  ++  + +SS +LL +++D+LD++ ++AG   LN   I L   LN     + T
Sbjct: 358 -LSEEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDT 416

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  +  I + V +   +  +V AD  RL Q+   ++ NA+ F++ G   +      N   
Sbjct: 417 RAKDKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSI 476

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  I     + +F  FV        +  G GLGL+I++  + L  G +++ S 
Sbjct: 477 SISVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESR 536

Query: 778 DEGVTTINCRIPSKE 792
               +T    +P KE
Sbjct: 537 LNVGSTFKITLPLKE 551


>gi|83815062|ref|YP_444248.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855]
 gi|83756456|gb|ABC44569.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855]
          Length = 1067

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 116/680 (17%), Positives = 245/680 (36%), Gaps = 79/680 (11%)

Query: 172  DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
            DG  +E+ E   + ++L      ++ L + L   + H    GDI + N +  +    +  
Sbjct: 396  DGAVTEITEQKRQEQQLRQSRERWRRLVEKLQDGL-HIAVDGDIRYINPAGAEILGADAP 454

Query: 232  VFQKAIGESRKLF--KEEIKKRMISSSALEKNFCETVSTLE--------HGNNKSYKIVR 281
                 IG S   F   E+ ++ +     L K + E  ST          +G  +  +   
Sbjct: 455  D--DVIGHSLWDFVALEQAQQEIFE-DRLRKIYRERTSTAPQEMEITGLNGERRVIESYT 511

Query: 282  VL----NSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNR 333
            V            +  D++++  +   L         I  N++  I     N+ L + NR
Sbjct: 512  VPIKFDGEQAGQTVFRDITEQKEMEQALREREARLRSITENVSDGIYRSTPNKGLVYANR 571

Query: 334  SFVELWEID--LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
            +F +++  +   A L  +P             +L    + ++    I       +  +  
Sbjct: 572  AFADIFGYESVEAILQIDPI------------ELYANPDARSENRRITKEQDHIDAAEAE 619

Query: 392  WHLPNGQTLHVIVTSN----PRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHL- 443
            +   +G T   +V++          I+      ++T Q +         +          
Sbjct: 620  FRRKDGSTFTGLVSATTVRDENDEVIYYDGAITDITEQKEQARTLRDRQQKLESLYTATR 679

Query: 444  -------SEGVA---------VFG---------PDGRIKLSNPA------FRSLWKTEEN 472
                    + VA         VF           DGR+     A        ++      
Sbjct: 680  HLLRAETPDAVATRIQHVLQDVFDYPLAGVDFAEDGRLVPVEGAIASPGQMPTIQSLSAG 739

Query: 473  RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
              S G        T      E+   D+    + S         G + +   S   +    
Sbjct: 740  GDSIGARAYRSGETVVVQNVEALDNDVAYGGLRSVACAPMGTHGVVLMGQTSHDAFDAFN 799

Query: 533  LPNAQTMLTFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            L   + ++T+  V  D +  E+ L E  E   + +E+K++F+ ++S+E+R+PLT+IIGF 
Sbjct: 800  LRLVEVLVTYAAVVLDRLGREQKLREAKETAEQVNEMKSAFLANMSHEIRTPLTSIIGFA 859

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            + +     G  +   S++   I      LL  ++ +L+L+ ++A  M+L  + + + +  
Sbjct: 860  EAIGDEVSGG-DPTVSRFAGLIEKGGRRLLETLDAVLNLSKLEAEEMELALAPLNVAEQA 918

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             +       +  +  I ++V          AD   L  +   ++SNA+ ++  G  V ++
Sbjct: 919  ADTGALFEQQAEKAGIDLRVDVPSGPLWARADEGALRIVLRNLVSNAVKYTGDGGRVWIR 978

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            A R     +  V++ G  +      ++F  F   +     +  G GLGL++ +  ++   
Sbjct: 979  ARRAEDQAVLEVEDTGQGMDPAAVSTLFEAFKQASEGKGREYEGTGLGLAVTKQAVDQME 1038

Query: 770  GHVSISSSDEGVTTINCRIP 789
            G + + +     +    R+P
Sbjct: 1039 GTIDVDTEKGVGSRFVVRLP 1058



 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/321 (9%), Positives = 105/321 (32%), Gaps = 25/321 (7%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISV----FKVLFDSLDFLVWHRDQAGDILWANISYKK 224
             +     +  +   + +K    +         + +++   ++       +++AN +   
Sbjct: 264 RDITDRKRQERQLRKEKRKTEEALQARDALLGSITENISEGIYRSTPDDGLVYANEALAD 323

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS-------- 276
                 +            + +  ++  +     + N  + ++ +E    ++        
Sbjct: 324 MLGYRSVDALLEADP-VHFYADPDQRAQV---IQQSNRNDGITGVEVEFRRTDGTTFTGL 379

Query: 277 YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYL 328
                V    G      G   +++++     QL  + E    ++  L   + I   +  +
Sbjct: 380 LSATTVRGPDGAVQYYDGAVTEITEQKRQEQQLRQSRERWRRLVEKLQDGLHI-AVDGDI 438

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           ++ N +  E+   D        S  + +   ++  ++ E    K ++E   +  +  E  
Sbjct: 439 RYINPAGAEILGADAPDDVIGHSLWDFVALEQAQQEIFEDRLRKIYRERTSTAPQEMEIT 498

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
                    ++  V +  +       +F ++T Q ++E              +++S+G+ 
Sbjct: 499 GLNGERRVIESYTVPIKFDGEQAGQTVFRDITEQKEMEQALREREARLRSITENVSDGIY 558

Query: 449 VFGPDGRIKLSNPAFRSLWKT 469
              P+  +  +N AF  ++  
Sbjct: 559 RSTPNKGLVYANRAFADIFGY 579



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 59/173 (34%), Gaps = 10/173 (5%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G   M  N          ++   +      +H  +   +  PDG +  +N         E
Sbjct: 130 GLAEMIVNELELHRQADAWDRARQQYEAIFNHTYQFTGLLTPDGILVEANDTALEFGGLE 189

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYS 529
              +           T            L AA+  + + E    +  ++   +   +++S
Sbjct: 190 REEVVGTPFWD----THWWQTGPETQQKLRAAVEQAAEGEFVRYEADVQGADETRTIDFS 245

Query: 530 IIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           I P+ +    +T       ++TD  R ER L ++     +A + +++ +  ++
Sbjct: 246 IRPVTDGDGSVTMLIPEGRDITDRKRQERQLRKEKRKTEEALQARDALLGSIT 298


>gi|182625335|ref|ZP_02953109.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|177909493|gb|EDT71940.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 623

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 98/513 (19%), Positives = 205/513 (39%), Gaps = 43/513 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           EI +  +       L +LT  +   D +      N++F     I+  ++      D   +
Sbjct: 103 EINLKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKVGIEKEYIIGKTDKDIFFD 162

Query: 358 FLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRG 410
                   P ++    KT +E I S  K     +  +   +G     + +      N   
Sbjct: 163 -------DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVK 215

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I +  +++ +  +E +     K+  E  ++L + V +     +    N AF  L+   
Sbjct: 216 GIIGLTRDISYKKAIEYRLKKNDKMFFEVFNYLDD-VVIIKEGEKTIYVNHAFEKLYGLN 274

Query: 471 ----ENRLSPGTHIRNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDS 524
                   S    +  I       ++  D  D F   A I   D+E +++          
Sbjct: 275 CKELYKEKSMIVKLDRIHPEDRYKFSNIDFEDFFMEKARIVRADNEVRNV---------- 324

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +   + I   N +++   + + D       +T+  E   + ++++  F  ++S+E ++P+
Sbjct: 325 LFRANSIKNENGESIRRIIVIND-------ITDTIEKSNEMEKLRMEFFANISHEFKTPV 377

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLN 641
             I     LL+     +++  +  Y+ YI     +   LL L+N+++D   ++AG   +N
Sbjct: 378 NLIYSALQLLELKLKNNIDRDEESYINYIKMAKQNVFRLLKLINNLIDSTKLEAGFFNVN 437

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +   + ++  SI     +N I I   ++ +      D   L +I   ILSNA+ F
Sbjct: 438 IKNHDIVSCVEDITMSICGFAEKNKISITFDTEEEEKIIAFDLNHLERILLNILSNAIKF 497

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           + +   + +  + D      S+K+ G  IP+D    +F+RF    +R  +   G G+GL 
Sbjct: 498 NRENGNIDVYMSFDERYVNISIKDTGIGIPKDKIDLLFDRFKKINNRLTKVNEGSGIGLF 557

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +  + ++GG + ++S     T    ++P K+
Sbjct: 558 IAKELVKINGGEMRVNSELGEGTEFIIKLPIKK 590



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 101/282 (35%), Gaps = 42/282 (14%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L     +  +  DSL   V+ +D  G  +  N +++      GI  +  IG++ K    +
Sbjct: 106 LKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKV---GIEKEYIIGKTDKDIFFD 162

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------------GEAGIAI 293
              ++ +    ++    +     +G    ++                      G  G+  
Sbjct: 163 DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVKGIIGLTR 222

Query: 294 DVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+S +  +  +L       +E+ + L   + I  +     + N +F +L+ ++   L   
Sbjct: 223 DISYKKAIEYRLKKNDKMFFEVFNYLDD-VVIIKEGEKTIYVNHAFEKLYGLNCKELYKE 281

Query: 350 PSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLP------NGQTLHV 402
            S    L+ +   ++     ++++ +      + ++    ++           NG+++  
Sbjct: 282 KSMIVKLDRIHPEDRYKFSNIDFEDFFMEKARIVRADNEVRNVLFRANSIKNENGESIR- 340

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                     I +  ++T  ++   K N + K++ E   ++S
Sbjct: 341 ---------RIIVINDITDTIE---KSNEMEKLRMEFFANIS 370


>gi|120611088|ref|YP_970766.1| signal transduction histidine kinase with CheB and CheR activity
            [Acidovorax citrulli AAC00-1]
 gi|120589552|gb|ABM32992.1| signal transduction histidine kinase with CheB and CheR activity
            [Acidovorax citrulli AAC00-1]
          Length = 1535

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 112/652 (17%), Positives = 226/652 (34%), Gaps = 55/652 (8%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
              E   K  +L +  S  + L D+        D+   I     S             + +
Sbjct: 754  NHELKSKVDELGHANSDMQNLMDATAIATVFLDRDLRITRFTPSAVTLFHLISTDVGRPL 813

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA----- 292
               R   +                  E       GN   Y +  +     +  IA     
Sbjct: 814  SNLRTQLQYPELAEDARRVLERLALVEREVGASDGN--WYLVRMLPYRTLDDRIAGVVLT 871

Query: 293  -IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             +D+S+     + L  + +    I++   V +   D   ++ F NR +  +       L 
Sbjct: 872  FVDISERKQGQEALRRSEDRFSAIVNQAVVGVVQTDLEGHITFVNRHYSHMLGYGHDELI 931

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHL-PNGQTLH---- 401
                  +LL+ +          + +     +  + +  E  H +   L  +G TL     
Sbjct: 932  G----TQLLDLIH-------PADRQLSAHLMRRLAEHGEPFHIEKRCLRKDGSTLWLHNS 980

Query: 402  VIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIK 457
            V   ++  GG   +I +  +++ +   E       +     I++  E  +     D RI 
Sbjct: 981  VSYLADAHGGPTASIVVCNDISERKRAENALRESTERLRLVIENAVEYAIFSTDLDRRIT 1040

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQ 515
              N     +    EN  + G     I     R           A       D+R  +   
Sbjct: 1041 TWNSGAERILGYSENE-AVGQLADMIFTPEDRAAGAPLSETRTALATGGALDDRLHQRKD 1099

Query: 516  GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI------- 568
            G+    S +++            +    + +D   +++AL +    L  A          
Sbjct: 1100 GSRFWASGALMPMHDGADAVVGFVKILRDQSDQRASQQALEQSRADLLTALRENEEARAA 1159

Query: 569  -------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                   K+ F+  +S+ELR+PL +I G + +L T      +  Q+     +   +  + 
Sbjct: 1160 LQAADATKDRFLAVLSHELRNPLASIAGASAVLATEGAAPADRDQA--ARIVQRQARAMA 1217

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             L++D++DL+ +  G M L    ++L++++    ++    +            G+     
Sbjct: 1218 VLLDDLMDLSRLRLGRMVLQQRDVLLDEIVEAALEATLGAIQAAGHEFVQDLPGEAVLLH 1277

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            AD  R+ Q+ + +LSNA  ++     V L A  + G F   V++NG  +  D    +F  
Sbjct: 1278 ADPVRIAQVLANLLSNAAKYTPDHGRVRLSAWTEGGWFHLCVEDNGIGMDPDTVDDMFTM 1337

Query: 742  FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
            F    +A     +G+G+GL++V + + +H G V   S+     +    ++P 
Sbjct: 1338 FSQSPDAGSRHTQGLGIGLALVRNIVEMHQGTVRGESAGPGQGSRFTVQLPL 1389



 Score = 38.4 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/210 (8%), Positives = 54/210 (25%), Gaps = 24/210 (11%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG--------SCAFLRILS 170
            +        +    +L + G+ F +         ++ +G            + A     +
Sbjct: 939  IHPADRQLSAHLMRRLAEHGEPFHI-----EKRCLRKDGSTLWLHNSVSYLADAHGGPTA 993

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANISYKKNTETE 229
               + ++++E       L       +++ ++  ++ ++  D    I   N   ++     
Sbjct: 994  SIVVCNDISERKRAENALRESTERLRLVIENAVEYAIFSTDLDRRITTWNSGAERILGYS 1053

Query: 230  GIVF----QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                       I                ++ A      + +   + G+        +   
Sbjct: 1054 ENEAVGQLADMIFTPEDRAAGAPLSETRTALATGGALDDRLHQRKDGSRFWASGALMPMH 1113

Query: 286  FGEAG------IAIDVSKEITVNDQLTHTY 309
             G         I  D S +      L  + 
Sbjct: 1114 DGADAVVGFVKILRDQSDQRASQQALEQSR 1143


>gi|2460283|gb|AAB71889.1| hybrid histidine kinase DHKB [Dictyostelium discoideum]
          Length = 1969

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 174/392 (44%), Gaps = 27/392 (6%)

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             I MF  +   VDL+       ++Q   +  +S    V   DG I  +NPAF S+++ + 
Sbjct: 807  VILMFYTILSSVDLKEIERKESRIQS--LFRISNEALVVHKDGLITDANPAFESMFQIKL 864

Query: 472  NRLSPGTH--IRNIAATCSRYYNES-----DGWDLFAAIITSFDDERKSLQGTLELLSDS 524
              L       I          +        D  D+     T  D   ++ Q  +     +
Sbjct: 865  QDLLYPIQSGIWEFLPALEGMFEPGASKLFDNPDMGVIETTGIDSSGRTFQVEVRTNKAT 924

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
               Y   P+ +  +++        + A+ AL +       A+E K  F+  VS+ELR+P+
Sbjct: 925  ---YDGEPV-DVISIIDITGRKQLMEADYALRK----AEAANEAKVIFLTTVSHELRTPI 976

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              ++   D+L+ +   +L+S Q +++  I  S   LL+L+NDILD + ++AG M++    
Sbjct: 977  NGVLASADILERT---TLDSTQKEFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYD 1033

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
              +  +L+   + ++  ++E  + + +  D  +   V  D++R+ QI    LSN++ F++
Sbjct: 1034 FSILKMLDNSIRIVSKNIYEKGLDLFIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFTN 1093

Query: 704  KGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
             G  +I +K   D+       F V+++G  I  +    +F  F         + RG GLG
Sbjct: 1094 HGQIIIRVKLVTDDSTHSLIKFDVEDSGIGIKTEHLNPLFASFSQIDSGNSRKYRGTGLG 1153

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LSI +    + GG V + S     +T +  IP
Sbjct: 1154 LSISKRLCKMMGGDVKVKSEFGVGSTFSFTIP 1185



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 13/147 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
               +  + +    +      A+ +  ++  +   N +F  +++I L  L   P    + 
Sbjct: 819 DLKEIERKESRIQSLFRISNEALVVH-KDGLITDANPAFESMFQIKLQDLLY-PIQSGIW 876

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG----- 411
           EFL +   + E    K +      V +++          +G+T  V V +N         
Sbjct: 877 EFLPALEGMFEPGASKLFDNPDMGVIETTGIDS------SGRTFQVEVRTNKATYDGEPV 930

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGE 438
            +    ++T +  L      L K +  
Sbjct: 931 DVISIIDITGRKQLMEADYALRKAEAA 957


>gi|325263352|ref|ZP_08130087.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031745|gb|EGB93025.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 1004

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 15/302 (4%)

Query: 499 LFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            F   IT    E      T++ L  DS+   SI+ L         +   +  +  + L +
Sbjct: 562 YFECRITRDTPEPHWYAFTIQGLARDSMHPNSIMIL----GHDIDMAKKEEDQRRKTLQD 617

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              A ++A E K+SF+  +S+E+R+PL  IIG+ +L    K      K   Y+     ++
Sbjct: 618 ALAAAQQASETKSSFLSRMSHEMRTPLNAIIGYLEL--GKKNADDTEKLWDYMAKSDIAA 675

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GK 676
             LL+++ND+LD+A++++G + L      L + +NE+++   ++     +  +V+ D  +
Sbjct: 676 HQLLSIINDVLDMASIESGKLHLEKVQFELTEEINEIREMFESQAWHKKLDFQVLMDSSE 735

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDF--IFSVKNNGSSIP 731
               + D  RL QI   +LSNA+ F+  G  V L   +     G     F V + G  + 
Sbjct: 736 KIYIMGDPLRLNQILINLLSNAVKFTPAGGKVTLSVKKTALQEGHVYYCFEVTDTGIGMS 795

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+   S+F+ FV        +  G GLG+SI ++ + +  G +S+ S+    T     +P
Sbjct: 796 EEYLDSLFDPFVQQDASIARKYGGSGLGMSITKNLVTMKQGTISVKSTPGEGTVFTVNLP 855

Query: 790 SK 791
            +
Sbjct: 856 FQ 857


>gi|217975276|ref|YP_002360027.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217500411|gb|ACK48604.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1629

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 142/844 (16%), Positives = 302/844 (35%), Gaps = 105/844 (12%)

Query: 23   KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL 82
             + +       LL   +  +  I                   + +Q  +   L    + +
Sbjct: 311  SLVLLSGCLFSLLLAALIAMWSI-----------SLQRKQQVLLEQARRASMLEHSLDGI 359

Query: 83   T--------IVWDGKDET------PEIIGQLHQRIDIPQTDTDLLS--FENWLKFHHYIK 126
                       W+   E          +GQ   ++ +P +        F   L       
Sbjct: 360  ISYDTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFSEVLAGK--TS 417

Query: 127  LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS---------LDGIYSE 177
            L++ T   R++G    L   T         G+++G    +R ++         L    S 
Sbjct: 418  LNRITSHQRQDGS--HLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASL 475

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVW--HRDQAGDILWANISYKKNTETEGIVFQK 235
              + T +   L   +   + L D+++  +     D  G IL  N ++       G   ++
Sbjct: 476  ERQVTKRTHALQQALLENQTLLDTINQQLLYSVTDPNGVILEVNDNF---CRISGYSREQ 532

Query: 236  AIGESRKLF-----KEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIV--RVLNSFG 287
             +G++  +           + M       +++   +  L+ H   K +  V   V + +G
Sbjct: 533  LVGKTHAILKSGEHDASFWRAMWQQINAGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYG 592

Query: 288  E----AGIAIDVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVEL 338
            +      + ID++       +  +   +L N+  A     I   D    +   NR    L
Sbjct: 593  KIERFVALRIDITDRKLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERL 652

Query: 339  WEIDLAFL--ATNPSNDELLE--FLRSANKLPE-QLNWKTWKENIF-SVYKSSETHKDTW 392
                   +   + P+   LLE   +RSA    E   + + +   I+ +  + SET   T+
Sbjct: 653  LGYSAEEMIGQSTPAPLHLLEEVMIRSAELSAEYGKDIQGFDVFIYKARAEGSETRNWTY 712

Query: 393  HLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
               +G    V ++            G + +  ++++ +  +    T      +  +    
Sbjct: 713  VRKDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDISLMLLQQQALMTASSHLSKAAEVAQL 772

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEE---------NRLSPGTHIRNIAATCSRYYNESDG 496
            G+  +   G     N    +++   E            S   H  +IA   ++     +G
Sbjct: 773  GIWTWNLLGNSLEWNERMFAIYDQPESLREQGLTYEHWSMRVHPDDIAFADAKLKGAVEG 832

Query: 497  WDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
               +  I  +   D   + +Q   ++  D             + +   +++T+  + E  
Sbjct: 833  TAQYDPIFRVVRTDGSIRYVQAAAQIERDKQGNAI-------RVIGINLDITEQQQLEET 885

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L +  +    A   K++F+ ++S+E+R+P+  ++G   L++ +   SL+ +Q  YV    
Sbjct: 886  LRKAKQEADAASAAKSAFLANMSHEIRTPMNAVLGMLQLIQYT---SLSRQQQDYVNKTQ 942

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  LL L+NDILD + +DAG + L+     +  L+ ++   ++    + ++ +    D
Sbjct: 943  TAAKSLLGLLNDILDFSKIDAGKLALDLHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLD 1002

Query: 675  -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSS 729
                   +AD+ RL QI   +  NA+ F+  G  ++    L+   D      S+ + G  
Sbjct: 1003 TALPPWLLADQLRLQQILVNLAGNALKFTHHGQVIVGIECLRHEADTVTVQISITDTGIG 1062

Query: 730  IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN-- 785
            I ++  + +F  F        RR  G GLGL+I +  I L G  + ++S     +     
Sbjct: 1063 ISDEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLIGLMGSELHVTSKVGVGSRFWFD 1122

Query: 786  CRIP 789
               P
Sbjct: 1123 VTFP 1126


>gi|309790686|ref|ZP_07685237.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227280|gb|EFO80957.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 830

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 151/389 (38%), Gaps = 23/389 (5%)

Query: 419 LTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRL 474
           +   +       T+ + +           + + V+     ++  +N              
Sbjct: 303 IAAAIRQWETLRTIQEREHFIQRVTQATPDLIYVYDLQTDQVIYTN--MEQGPGGMPLTA 360

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSII 531
             G      A   +R       +     II + D +  SL+  L+    S   +L    +
Sbjct: 361 IIGRTSD--ADLSARELATRQAY--LTQIINAADMQVCSLEYRLQQADGSNLWLLRRDTV 416

Query: 532 PLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            + +AQ   T       +VT+      AL    E    A+  K++F+  +S+ELR+PLT 
Sbjct: 417 FVRDAQGYPTQILGIVQDVTERHYRSEALLRAKEDAEAANRAKSTFLSMMSHELRTPLTA 476

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG++ LL               + +I  S   LL L+ND+++L+ +D+G   L+   + 
Sbjct: 477 IIGYSQLLGQLMTVGDYEGVKSDLHHIYTSGKHLLALINDVIELSRIDSGQRNLDMRPVN 536

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + DL+ E    +   +  N   +++     +   + D  ++ QI   +L+NA  F+  G 
Sbjct: 537 IVDLVTEAVSMVRPLVTRNRNTLQIECPLDIPIVITDSLKVRQIILNLLNNAAKFTENGE 596

Query: 707 TVILKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
                     G+    IF + + G  I +     +F+ FV        +  G GLGL++ 
Sbjct: 597 ITFTTIYDPQGEVPTLIFQIADTGIGIDQRQIPRIFDPFVQVDEALNRRYEGTGLGLALC 656

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
                + GG +S+ S+    +    R+P 
Sbjct: 657 RRLCEVLGGEISVQSTLGVGSIFTVRLPL 685


>gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
 gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
          Length = 770

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E+AL    E    A   K+ F+ ++S+E+R+P+  +IG  ++L+ +K   L   Q
Sbjct: 226 ERDEREQALERAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETK---LTPDQ 282

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  S   LL ++NDIL+ + ++AG ++L  +T  L  ++ +V   +A K  E  
Sbjct: 283 EMYTDTIVKSGNALLTIINDILNFSKIEAGKLELTQATFNLRTVVEDVVMLLAPKAAEKW 342

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFS 722
           +++ +  D  L  F   D  R+ QI + ++ NA+ F+S+GS    V   +     D   S
Sbjct: 343 VQLTLRYDPDLVEFYDGDAGRIRQIITNVVGNAVKFTSQGSVHIDVTGTSRGKEMDLRIS 402

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP +    +F+ F  V  A      G GLGL+I    + L  G + ++SS+  
Sbjct: 403 VVDTGIGIPAEKLDRIFHAFEQVDGAATRSFEGTGLGLAISTRLLQLMKGRIHVTSSEGK 462

Query: 781 VTTIN--CRIPS 790
            +       +P+
Sbjct: 463 GSVFTIDITLPT 474


>gi|156978233|ref|YP_001449139.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156529827|gb|ABU74912.1| hypothetical protein VIBHAR_07038 [Vibrio harveyi ATCC BAA-1116]
          Length = 641

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 144/294 (48%), Gaps = 24/294 (8%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--------------ALTEKNEALR 563
           LELLS +V ++S   +P+  T+       +    ER               + +  +   
Sbjct: 179 LELLSGAVSDFSGGHVPSKVTLPKRWFFDEVSLLERKYNRSVERVSEHQLEIEQARDKAE 238

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A+  K+ F+  +S+E+R+P+  IIG   LL  +K   L+ +Q  +V  I++SS  L+ +
Sbjct: 239 VANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTK---LDEQQKDFVSIINSSSNSLMVI 295

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           ++DILD + ++AG ++L  +T  L DLL+EV +    K  +  +++    D +L      
Sbjct: 296 IDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPLEVKG 355

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN-GDFIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+ S +LSNA+ F+ +G     V L + + +     F V ++G  I ++  ++V
Sbjct: 356 DMGRLKQVLSNLLSNAVKFTERGHVKLMVSLVSRKTDIASVHFRVVDSGIGIAKENQQTV 415

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F +F        R   G GLGL+I  S + + GG + ++S     +     IP 
Sbjct: 416 FEKFQQADGSTTRKYGGTGLGLAICNSLVEVMGGEIRLTSEPGLGSYFEFTIPL 469


>gi|284166174|ref|YP_003404453.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015829|gb|ADB61780.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 642

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/497 (18%), Positives = 196/497 (39%), Gaps = 38/497 (7%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                   EI   ++ A    D +    + N    EL   D   L      DE       
Sbjct: 174 ERTRRELEEIYGRISDAFFALDGDWNFTYLNERAHELINPDGKTLVGKRVWDEF------ 227

Query: 362 ANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
               PE +  +   E   ++Y + + + ++ +  P G+   V    +  G +++ F ++T
Sbjct: 228 ----PEAMGQQFKAEYERAMYDQETVSFEEYYPDPLGRWFEVRAYPSETGLSVY-FRDIT 282

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSP--G 477
            + +        +++    +DH ++ V V  P  GR   +N         +   L     
Sbjct: 283 ERKE----RQRELELFRTLLDHSNDSVLVIDPGSGRFLDANETACRRLGYDREELLDLTV 338

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             + ++    + ++   +      ++  + +  RK   GT        +  + + L    
Sbjct: 339 PEMDHVFDDVADWHTHVEDVKDEGSMTITGEHVRK--DGTTYPAE---VNVAHVELDREY 393

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    ++T+    ERAL E NE L         F    S++L+ PL  +  +  LL+  
Sbjct: 394 MIAIARDITEHRERERALEESNERL-------EQFAYAASHDLQEPLRMVSSYLQLLERR 446

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                +    ++++Y    +  +  +++ +L  + V+       +  + L+ LL +V   
Sbjct: 447 YADEFDEDGEEFLDYAVDGAERMREMIDGLLAYSRVETRGDP--FEPVDLDCLLEDVLDD 504

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAA-RD 715
           ++ ++ E +  ++      L     D  +L Q+F  +L+NA+++S  +   V L+AA R+
Sbjct: 505 LSLQLEETDAEVET---EPLPRVRGDASQLRQVFQNLLANALEYSGPEPPRVHLEAAQRE 561

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              +  SV + G  I  +    VF+ F     R +  G G+GL++ E  +  H G + + 
Sbjct: 562 GAMWEVSVVDEGIGIDPEDQDRVFDVFQRLHSREEYDGTGIGLALCERIVERHDGEIWVE 621

Query: 776 SSDEGVTTINCRIPSKE 792
           S     +T +  +P+ +
Sbjct: 622 SEPGEGSTFSVTLPAAD 638



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 83/265 (31%), Gaps = 24/265 (9%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG--IVFQKAIGES 240
           L+ ++    +     ++  +    +  D   +  + N    +    +G  +V ++   E 
Sbjct: 171 LENERTRRELE---EIYGRISDAFFALDGDWNFTYLNERAHELINPDGKTLVGKRVWDEF 227

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            +   ++ K     +   ++              + +++    +  G +    D+++   
Sbjct: 228 PEAMGQQFKAEYERAMYDQETVSFEEY-YPDPLGRWFEVRAYPSETGLSVYFRDITERKE 286

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFL--ATNPSNDELLE 357
              +L     +L +   ++ + D  +      N +       D   L   T P  D + +
Sbjct: 287 RQRELELFRTLLDHSNDSVLVIDPGSGRFLDANETACRRLGYDREELLDLTVPEMDHVFD 346

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL----HVIVTSNPRGGTI 413
                    +  +W T  E++      + T +      +G T     +V      R   I
Sbjct: 347 ---------DVADWHTHVEDVKDEGSMTITGEHV--RKDGTTYPAEVNVAHVELDREYMI 395

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
            +  ++T   + E       +   +
Sbjct: 396 AIARDITEHRERERALEESNERLEQ 420


>gi|229917478|ref|YP_002886124.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
 gi|229468907|gb|ACQ70679.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
          Length = 613

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 154/383 (40%), Gaps = 27/383 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G   + F  LT ++ +         +     ++++S+GV       R+ L N   R +  
Sbjct: 246 GQLAYAFNELTDELMEANATTEAERRRLTSVLENMSDGVVATDRSLRVILMNDQARDMIG 305

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E   + GT+++++ A         DG      I  S D+E              ++  
Sbjct: 306 VAEEE-AMGTNLQSLLAFEEEIVIPEDGTMPTKLIDLSTDEEL------------FLVRA 352

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              P+      +T + V      E+          + ++ +  FV +VS+ELR+PLT + 
Sbjct: 353 YFSPIQKHSGPITGLIVVLHDVTEQE---------QVEQDRREFVANVSHELRTPLTTMR 403

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + ++L             +++E     +  ++ LVND+L L+ +D+   K+        
Sbjct: 404 SYLEVLAEGAYQD-EELAPRFLETTQNETERMIRLVNDLLQLSKMDSKEYKMQKVKFDFV 462

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
              N++          + I+ +     +     AD+ ++ Q+   I++NA+ FS +G T+
Sbjct: 463 QFFNDIIDRHE-MTKGDAIQFRRKLMKRRVYVHADQDKMTQVIDNIITNAIKFSPEGGTI 521

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             +        +  +K+ G  IP+   K +F RF        R   G GLGLSI +  ++
Sbjct: 522 TFRTMLRAKRLVIGIKDEGVGIPKSNLKKIFERFYRVDKARARNIGGTGLGLSIAKEVVS 581

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +   S     TTI   IP
Sbjct: 582 AHGGDIWAESEFGRGTTIYFTIP 604



 Score = 44.9 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 27/180 (15%)

Query: 284 NSFGEAGIAID------VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +  G+   A +      +    T   +      +L N++  +   D++  +   N    +
Sbjct: 243 DEVGQLAYAFNELTDELMEANATTEAERRRLTSVLENMSDGVVATDRSLRVILMNDQARD 302

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           +  +     A   +   LL F      +PE     T K    S  +     +  +     
Sbjct: 303 MIGV-AEEEAMGTNLQSLLAF-EEEIVIPEDGTMPT-KLIDLSTDEELFLVRAYFS---- 355

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
               +   S P  G I +  ++T Q  +E            +  T +      ++ L+EG
Sbjct: 356 ---PIQKHSGPITGLIVVLHDVTEQEQVEQDRREFVANVSHELRTPLTTMRSYLEVLAEG 412


>gi|219847901|ref|YP_002462334.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542160|gb|ACL23898.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 725

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/382 (23%), Positives = 178/382 (46%), Gaps = 32/382 (8%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           QV  ET Y+      G+    L  G+A+   +GR+  +NPA+  +W+  E       ++ 
Sbjct: 349 QVAYETSYH-----LGQVFSSLPIGLALLDLNGRVIRANPAWHQVWRLPEQPQRSSFYVG 403

Query: 482 -NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            ++        ++      F  +     D+   +   L       L    +P  ++   L
Sbjct: 404 IDLVEHLLTRLSDPFRLSEFCDLGQRSPDQVFEINLQLRQPYQE-LHVLSVPTRDSHHQL 462

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T      S R             ++D +K+ F+  VS+ELR+PLT+I+G+T++L   +  
Sbjct: 463 TGRLWVVSDRTRER---------ESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQ-D 512

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +  Q +++  +S  +  L  +V D+LD++ ++AG++KLN   + L  ++ E+   + T
Sbjct: 513 LDSESQREFLLTVSNEADRLHKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTLQLHT 572

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---- 716
           ++ ++ + I + +   L    ADR ++ QI   +LSNA+ +S +G+ + L   +      
Sbjct: 573 QLVQHKLLIDMRTP--LPPVFADRDKVKQIIVNLLSNAIKYSPEGTEIQLIVRQAEASDL 630

Query: 717 -------GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
                     + +V++ G  I  +    +F RF  V N++  Q+ GVGLGL I    + L
Sbjct: 631 PAGHPAGQWMLITVQDQGIGIEPEDQARLFERFHRVDNSNTRQKSGVGLGLYITRLLVEL 690

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG + + S+    ++ +  +P
Sbjct: 691 HGGRIWVQSTVGVGSSFSFTLP 712



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 79/220 (35%), Gaps = 30/220 (13%)

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFG 287
           +  +A+   R L   +  +           F   ++     + +   +     R  N+F 
Sbjct: 267 LAGQAVQVRRPLLVRDAGRE--PGLPNGMPFLAELAAPISTDERVLAVLILHSRRANTFT 324

Query: 288 EAGIA-IDVSKEIT------------VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           E  +A ID  +E                +   H  ++  +L + +A+ D N  +   N +
Sbjct: 325 EEVLAFIDALRERAGLPLARAMAYQVAYETSYHLGQVFSSLPIGLALLDLNGRVIRANPA 384

Query: 335 FVELWEIDL-----AFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSV-YKSSET 387
           + ++W +       +F       + LL  L    +L E  +  +   + +F +  +  + 
Sbjct: 385 WHQVWRLPEQPQRSSFYVGIDLVEHLLTRLSDPFRLSEFCDLGQRSPDQVFEINLQLRQP 444

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           +++   L    ++    + +   G +W+  + T + + + 
Sbjct: 445 YQELHVL----SVPTRDSHHQLTGRLWVVSDRTRERESDR 480


>gi|83815808|ref|YP_445757.1| PAS domain-containing protein [Salinibacter ruber DSM 13855]
 gi|83757202|gb|ABC45315.1| PAS domain S-box protein [Salinibacter ruber DSM 13855]
          Length = 904

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 118/674 (17%), Positives = 253/674 (37%), Gaps = 56/674 (8%)

Query: 145 AETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
             + +   ++ EG+  G+   LR         ++ +   + + L      ++ L D+   
Sbjct: 254 VLSVSGAPLQAEGKGPGAVFHLR---------DITDRVRREQTLRRVKERYQTLVDNFPD 304

Query: 205 L-VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNF 262
             V+   +         +  +  E+ G+      G++   LF +EI +  ++      + 
Sbjct: 305 GGVFLFGEDLRFRL---AGGQRLESAGLPPSNVEGKTPHDLFPDEIAREHVTYFRRALDG 361

Query: 263 CETVSTLE-HGNNKSYKIVRVLNSFGEA--GIAI--DVSKEITVNDQLTHTYEILHNLTV 317
            + V   E  G +   + + +    G+   G+A+  D+++      +L  +  +  N   
Sbjct: 362 EKHVYEQEYQGQHYRVQTLPIRGKAGDVISGLAVSQDITERKERERRLRQSETLFQNAQD 421

Query: 318 AIAIFD----QNRYLQFH---NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           A+ + D     +     +   N  + E +    A +      +      R          
Sbjct: 422 ALFLLDVEGEADGRTFRYRRVNPVYEEQFGHAEAEIRGRSPREVFGGDARRLMM------ 475

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLH-VIVTSNPRGGTIWMFENLTVQVDLETKY 429
               K      ++ +  +++T  L   +T     +      G +     +T  V  + + 
Sbjct: 476 ---EKCRRCVQHREARLYEETISLEGRETYWKTRIAPVVVEGRVRQIVGITRDVTEQHRR 532

Query: 430 NTLVKVQGETIDHLSE--GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
              ++ Q +  D   E   V  +  D R   SN       K     L          +T 
Sbjct: 533 QEALERQNDLFDRAQEIASVGAWEYDARADASN-----WTKKAYEILGYPPDADPNPSTA 587

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ------TMLT 541
             YY+  D   +  A+  +  + + S         D V    I   P  +         T
Sbjct: 588 VGYYHPEDQPRVQKALRDALQEGKPSDLEVRVAAGDEVRWARIRGEPQWEDGEVVRVRGT 647

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG- 600
             ++T+  + ERAL E  +   +A ++K+S + ++S+E+R+PLT+IIGF +         
Sbjct: 648 IQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKEL 707

Query: 601 --SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               +S    Y E I  S   LL  +  +L+L+ ++AG M+L    + L +    V + +
Sbjct: 708 DLPDDSPLPNYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAEEL 767

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +  E  + +++ ++       AD+  +  +   +LSNA+ ++  G  V L+  R+ G 
Sbjct: 768 RPRAEEKEVLLQLETEAAWAE--ADKGGVQILARNLLSNAVKYTEAGGRVRLRTYREEGA 825

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  +  +  + +F  F   +     + +G G+GL++ +       G + + +
Sbjct: 826 VAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSIDVET 885

Query: 777 SDEGVTTINCRIPS 790
                T I   +P 
Sbjct: 886 EKGEGTRITVWLPK 899


>gi|15964474|ref|NP_384827.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
            1021]
 gi|307308417|ref|ZP_07588121.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
 gi|15073651|emb|CAC45293.1| Two-component histidine kinase, stationary-phase regulator of cell
            surface physiology and symbiosis [Sinorhizobium meliloti
            1021]
 gi|306901020|gb|EFN31628.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
          Length = 1134

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/588 (19%), Positives = 229/588 (38%), Gaps = 34/588 (5%)

Query: 224  KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
              T  E   F++   +  + F  +   +   +    +     ++  +   ++  +     
Sbjct: 556  ALTRGEQAAFREIARQLGEHFAPDQLPQEGKAEGRHEADTPPITPADTEESRQTEEAEAP 615

Query: 284  NSFGEAGIAIDVSKEI-----TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
              + +A  A +          T  +    + EIL  L VA+ +   +  L   N  F+ L
Sbjct: 616  GGWHDATPAGETPAAAMEPGLTARNGAAMSSEILDRLPVALLVHHGDA-LLHANAEFLRL 674

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
               +             LE       L                   +   KD   +P G 
Sbjct: 675  TGYEN------------LEAFEQEGGLEALFALGNEAGAAKPNGTMTLVRKDGRLIPVGA 722

Query: 399  TLH---------VIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVA 448
             LH         +++   P G +    +    +   E  +    +      ++  ++GV 
Sbjct: 723  HLHSIRWEGKSALMLALTPAGASEAEKQAREDEGAAEASRLRMEIDELRSILETATDGVV 782

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            V G DG I+  N +  +L+  +E  +  G     + A  S+         L    + S  
Sbjct: 783  VLGRDGDIRTMNRSASALFDYDEADMR-GKPFAALFAHESQKAVIDYLQGLSGHGVASVL 841

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE 567
            ++ + + G         L  +I  L ++        ++T   R E  L     A   A+ 
Sbjct: 842  NDGREVIGREAAGGFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAAETANA 901

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVND 626
             K  F+  VS+E+R+PL  IIGF+D++ +   G + + +  +Y   I  S   +L++VND
Sbjct: 902  HKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVND 961

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD++ ++AG M L++  + LN+ ++E    +  + +   + I+    G +   VAD + 
Sbjct: 962  LLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDRS 1021

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + QI   IL+NA+ F+  G  +++  + + NG  I  +++ G  +  +        F   
Sbjct: 1022 IKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQV 1081

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               G++R  G GLGL + ++    +    +I+S+    T +    PS+
Sbjct: 1082 TTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFPSQ 1129


>gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 614

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 94/447 (21%), Positives = 180/447 (40%), Gaps = 33/447 (7%)

Query: 375 KENIFSVYKSSET-HKDTWHLPNGQTL---HVIVTSNPRG---GTIWMFENLTVQVDLET 427
           K    S Y+ +       +  P G  +   HV+   N  G     + + + +T +   E 
Sbjct: 17  KRGRMSTYRQAFAGISSRFEAPYGHRVYEVHVLPVRNDDGEIFAGMTITQEITERKQSEL 76

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----------EENRLSPG 477
                +++    ID     V  +     +   + A   ++            ++  +   
Sbjct: 77  ALQNALQLLNLHIDTTPLAVVQWDCHLCVTRWSSAAEKIFGWLAEEVIGKYIQDLHIVYE 136

Query: 478 THIRNIAATCSRY----------YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +  +A    R           YN +   D        ++    + +G++  +   VL+
Sbjct: 137 EDMTAVAEVSDRLLSGQEAQIIQYNRNYTKDGRVIYCEWYNSSITNEEGSVTSVLSLVLD 196

Query: 528 YS-IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            +  I    A      +   +  +A          L +A  +K+ F+  VS+ELRSPL  
Sbjct: 197 VTERIQAEKALRQSELMVTEERAQALERERAARIELERASRMKDEFLAIVSHELRSPLNG 256

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G++ LL+T KL     K  Q +E I  ++     L+ D+LD++ +  G ++L      
Sbjct: 257 ILGWSRLLRTRKLSP--EKIEQALESIERNAQAQTQLIEDLLDISRIIRGNIRLLVRPTK 314

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  ++     ++    +  +I+I    +  +G   AD +RL Q+   +LSNA+ F+ +G 
Sbjct: 315 LIPVIQAALDTVRPIANTKSIQIISRLNFDIGLVSADPERLQQVIWNLLSNAVKFTPEGG 374

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            V +   +   +    V + G+ I  +    VF+RF        R   G+GLGL+IV + 
Sbjct: 375 RVEICLEQVETNVQIQVIDTGTGISPEFLPYVFDRFRQADATTTRNQGGLGLGLAIVRNL 434

Query: 765 INLHGGHVSISSS-DEGVTTINCRIPS 790
           + LH G VS++S  +    T   ++P 
Sbjct: 435 VELHNGKVSVASPGEGQGATFTVQLPL 461


>gi|268679228|ref|YP_003303659.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617259|gb|ACZ11624.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 1068

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 141/293 (48%), Gaps = 14/293 (4%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             F    K L+     + +       +    A+ M     + D  +A   + ++ +   +
Sbjct: 326 AQFRKNVKGLENIFTRVEELAETKEKVDFNTAEGMNVAYGIID--KAIENIAKEKKNAEE 383

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K+ F+ ++S+E+R+PL  IIGFT+LLK S    L+ ++ ++V+ I  SS  LL ++
Sbjct: 384 ASAAKSIFLANMSHEIRTPLNGIIGFTELLKNS---DLDEEKREFVDVIEKSSENLLAII 440

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           N+ILDL+ V++  ++++ S     D      +    K  E NI++ +  D  L +++  D
Sbjct: 441 NNILDLSKVESNKIEIDESLFSPIDEFENAVEVYGPKAAEKNIQLSLYMDPSLHNYLKGD 500

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKS 737
             ++ ++   ++SNA+ F+     + ++  R      D    +FSV+++G  I ++  + 
Sbjct: 501 SVKIKEVLINLMSNAVKFTPNNGQITVEIKRLENAPLDKAKVLFSVRDSGIGINKEKIEG 560

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F+ F        R   G GLGL+I   +I L GG + + S +   +     +
Sbjct: 561 IFDAFNQADSTITRKFGGTGLGLTISSKYIALMGGKLDVESEEGQGSRFFFIL 613


>gi|218677263|ref|YP_002396082.1| putative two-component sensor [Vibrio splendidus LGP32]
 gi|218325531|emb|CAV27738.1| putative two-component sensor [Vibrio splendidus LGP32]
          Length = 808

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 128/257 (49%), Gaps = 15/257 (5%)

Query: 542 FVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +    + +R + + L +  +    A+  K+ F+ ++S+E+R+P+  IIG + LL      
Sbjct: 215 YNQSIERIRQQYQELEKAKDTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM--- 271

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +  +Q +YV+ ++ SS  LL+L+NDILD + ++AG ++L    + +  +  +V+ +   
Sbjct: 272 DMPKEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
           K  +  ++ ++  D K+    + D  +L Q+ + ++ NA+ F+  G  V+L    +    
Sbjct: 332 KAEQKGLKFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEHGH-VMLSLRLEEVIE 390

Query: 718 -----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                   F V ++G  I ED  +SVF++F        R   G GLGL+I +  + L G 
Sbjct: 391 PEQKLRVKFEVTDSGIGIAEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGS 450

Query: 771 HVSISSSDEGVTTINCR 787
            + ++S     +T    
Sbjct: 451 KLELTSIVGKGSTFYFT 467


>gi|169334578|ref|ZP_02861771.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259295|gb|EDS73261.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM
           17244]
          Length = 591

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 122/250 (48%), Gaps = 8/250 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +S+  + +L  K    + A+  K+ F+  +S++LR+PL  IIG + L     +     
Sbjct: 195 YMNSILEQESLKAKLNEEKSANSAKSEFLSRMSHDLRTPLNGIIGSSYLALNDDIP--RE 252

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           + + Y+  I+ S   LL+L+ND+LD++ +++  M+L+     L++ L+ V   I  +  E
Sbjct: 253 EVNDYLNKINQSGKYLLSLINDVLDMSKIESDKMELHPEPYTLSEFLDTVNSIIKEQCSE 312

Query: 665 NNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDF- 719
           N+I   ++  +  +   + DR R  QIF  +LSN++ F+ KG  + L     ++D+    
Sbjct: 313 NDIDFDIVCKEVDIKCVMLDRLRFNQIFLNLLSNSVKFTPKGGKIDLIIEHLSKDDDKIK 372

Query: 720 -IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F V++ G  + ++     F  F          G GLGLSIV   + L  G + I S  
Sbjct: 373 KRFIVRDTGIGMSKEFLAHAFEPFTQEKAGDTSEGTGLGLSIVYKIVELMNGRIYIESEP 432

Query: 779 EGVTTINCRI 788
              T++   +
Sbjct: 433 GKGTSVTVEL 442


>gi|308271995|emb|CBX28603.1| hypothetical protein N47_G39270 [uncultured Desulfobacterium sp.]
          Length = 491

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 158/392 (40%), Gaps = 26/392 (6%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           H+  T            ++    D  ++  TL       ++ +S+GV     + R+ L+N
Sbjct: 119 HLRATIAKAIYYTQTLRDI---ADTRSRLRTL-------VNRISDGVMCTNHENRVVLAN 168

Query: 461 PAFRSLWKTEENRLSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           PAF  +       +   +    I  A       E+   +   A+  + +        + E
Sbjct: 169 PAFLRMIGCSAESVIGSSTDEFINIARIREIIKETLNVNDSRALELTEEIPVNRHSRSEE 228

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +    +L     P  +       V                 AL+K D +K+ FV  VS+E
Sbjct: 229 I----ILNVRCTPFRDRTGRNIGVITV---------LHDITALKKMDRMKSEFVSTVSHE 275

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +RSP+ +++    ++     G L  KQ   +         L  +  ++LDLA +++G++ 
Sbjct: 276 IRSPMNSVLMQIQVILDGLAGELTEKQRDILTRAYRKVENLAQMTTELLDLARIESGLIT 335

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    + + D++ +            +I + +    +L   +A+R+ + ++ S +++NA+
Sbjct: 336 LEREPVAMADVIRDQVAFYLPLAASASIGMDIDISQELPPVLANRRNMEEVLSNLITNAI 395

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            +S  G  + + A+  N      VK+ G  I  +    +F RF     +  R   G GLG
Sbjct: 396 KYSPGGGRITVSASIANDYLHIRVKDTGMGISAEDQHRIFERFYRVKDKKTRYINGTGLG 455

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L IV+S +  H G + I S +   +T +  +P
Sbjct: 456 LVIVKSILESHQGRIKIESQEGEGSTFSFFLP 487



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 10/134 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + D  +    +++ ++  +   +    +   N +F+ +            S DE +  
Sbjct: 135 RDIADTRSRLRTLVNRISDGVMCTNHENRVVLANPAFLRMIGCSAE-SVIGSSTDEFINI 193

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTI 413
            R    + E LN      +  ++  + E   +         L+V  T          G I
Sbjct: 194 ARIREIIKETLN----VNDSRALELTEEIPVNRHSRSEEIILNVRCTPFRDRTGRNIGVI 249

Query: 414 WMFENLTVQVDLET 427
            +  ++T    ++ 
Sbjct: 250 TVLHDITALKKMDR 263


>gi|153873278|ref|ZP_02001912.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070256|gb|EDN68088.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 617

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           D E+K  + T ELL    +    +    A+ +        + +   A   K E  +K  E
Sbjct: 54  DLEQKVKERTAELLEARNILEQRVEERTAELLTAKNLAEQAQKMADADRVKAEQSQKIAE 113

Query: 568 ----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
                K+ F+ ++S+ELR+PL  IIG++++L+              ++ I  +   LL L
Sbjct: 114 EANYAKSHFLANMSHELRTPLNAIIGYSEMLQEDAEDLNQESCVLDLKKIQGAGKHLLGL 173

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +N +LDL+ ++AG M+L   T  LN +LNE+  +I   + +    +K + D  LG    D
Sbjct: 174 INTVLDLSKIEAGRMELYIETFELNPVLNEIVSTIQPLVEKKANVLKTVFDDNLGQMHTD 233

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             +L Q+   +LSN   F+ +G  + ++  RD     F + +NG  + E+  K +F  F 
Sbjct: 234 LTKLRQMLLNLLSNTAKFTEQG-QIRMEVRRDGEWINFCIADNGIGMTEEQQKKIFQPFT 292

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  RR  G GLGL+I + F  + GG + + S     +     +P +
Sbjct: 293 QADASTTRRYGGTGLGLAITKQFSEMMGGVIWVESEFGQGSIFMMSLPIQ 342


>gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 1098

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 131/255 (51%), Gaps = 6/255 (2%)

Query: 541 TFVNVTDSVRAERALTEKN----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +   +  +AE+ + + N    E L+K D++K+ F+   S+ELR+PL  +IG  + +  
Sbjct: 397 INMMKKEKEQAEQEVIKSNLRALENLKKTDKLKDEFLAMTSHELRTPLHGMIGIAETMYD 456

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G +     +++  I +S   L +L+NDILD + +    M L+   + L +L++ V  
Sbjct: 457 GATGKMTQSMKKHLSMIISSGKRLSHLINDILDFSILKNDAMNLHLKKVHLKELVDVVII 516

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
              + ++E NIRI    D  +   + D  RL Q+F  ++ NA+ ++ +G TV++ A  D 
Sbjct: 517 MSQSLLNEKNIRIINEIDTNIRPVLGDENRLQQVFFNLIGNAIKYTERG-TVVISAEEDG 575

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                 + ++G  I  D   ++F+ F     +  ++ G GLGL+I +  I  HGG++S+ 
Sbjct: 576 KMLQVHITDSGIGISADQIDTIFDAFNRGGNNSEEQSGTGLGLNITKKLIEAHGGNISVV 635

Query: 776 SSDEGVTTINCRIPS 790
           S +   +T +  IP 
Sbjct: 636 SQEGKGSTFSFLIPL 650



 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            + ++  +  L D  +   ++ + +                   L + NE L K    +  
Sbjct: 817  RKIKEQMRELDD--VNQRLLQINDELEGKVRERTVALKEVNDELLKANEDLIKLQNARTH 874

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
             + ++S+E  +P+T +  +   ++   + + ++    Y++ +     +L  L+ D+ D++
Sbjct: 875  MLSNISHEFGTPVTFLQSYIQSVRAGIIEANDA---HYLKSVENKVNMLNRLIEDLYDIS 931

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS----DGKLGSFVADRQRL 687
             +++G + L      L++ +N++     T +    I +        + +      D  R+
Sbjct: 932  KLESGDITLMTKERNLHEWINQMYDKFETDVTRRKITLHKPVFTGNEEQDIRIDIDNDRM 991

Query: 688  LQIFSKILSNAMDFSSKGSTVIL-KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
             Q+F+ I+ NA+  +++G  + +    +D  + +  +K+NG  I E     VF RF    
Sbjct: 992  DQVFTNIIYNAIKHTNEGGDIWINVVVKDRQEVMIEIKDNGHGIKESDLPFVFERFFKGE 1051

Query: 747  HRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 + G GLGL+I +  I+ H G +S+ S++         +P
Sbjct: 1052 KVINGKIGTGLGLAISKEIIHHHNGEISVKSTEGNGAIFCISLP 1095


>gi|311032225|ref|ZP_07710315.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 611

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 162/415 (39%), Gaps = 30/415 (7%)

Query: 385 SETHKDTWHLPNGQTLH-VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETID 441
           S+  K    +  G     V +  N   G + + F NLT ++ + +       +     + 
Sbjct: 212 SDMRKQALEMARGNFSRKVNIYGNDEIGQLALSFNNLTKKLQEAQATTEGERRKLSSVLS 271

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      GRI L N     +       +     +  +    +  +++        
Sbjct: 272 HMTDGVLATDRKGRIILINEPALGMLNVSRETVLNKPIVEVLGIEETHSFDQLVSEQ--E 329

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           ++I  F  E++     +   S+S+++     +    T+L  +   + +  ER        
Sbjct: 330 SLILDFSTEKEP---YILRASNSIIQKETGFINGLITVLHDITEQEKIDLER-------- 378

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                     FV +VS+ELR+PLT +  + + L        +    ++++     +  ++
Sbjct: 379 --------REFVANVSHELRTPLTTMRSYLEALADGAWQD-DEIAPRFLDVTQTETERMI 429

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+L L+ +D+       +++   +  N++ +       +  +        +     
Sbjct: 430 RLVNDLLQLSKMDSRDYNFYKNSVDFVEFFNKIIERFEMSKSQK-VDFVRSMPNQEVFVS 488

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVF 739
            D  ++ Q+   I+SNAM +S +G T+      +      + S+ + G  IP+     +F
Sbjct: 489 IDTDKITQVLDNIISNAMKYSPEGGTITFTVDIEEAANQILVSISDQGVGIPKSDLNKIF 548

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF        R   G GLGL+I +  I  H G +  SS +   TTI   +P  E
Sbjct: 549 ERFYRVDKARTRMLGGTGLGLAIAKEMIQAHDGDIWASSVEGKGTTIYFTLPISE 603



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 31/229 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L ++T  +   D+   +   N   + +  +    +   P     
Sbjct: 254 EAQATTEGERRKLSSVLSHMTDGVLATDRKGRIILINEPALGMLNVSRETVLNKP----- 308

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              +     + E  ++        S+     T K+ + L    ++    T     G I +
Sbjct: 309 ---IVEVLGIEETHSFDQLVSEQESLILDFSTEKEPYILRASNSIIQKETGF-INGLITV 364

Query: 416 FENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             ++T Q  +DLE +           T +      ++ L++G      D  I    P F 
Sbjct: 365 LHDITEQEKIDLERREFVANVSHELRTPLTTMRSYLEALADGAW---QDDEIA---PRFL 418

Query: 465 SLWKT-EENRLSPGTHIRNIAATCSRYY----NESDGWDLFAAIITSFD 508
            + +T  E  +     +  ++   SR Y    N  D  + F  II  F+
Sbjct: 419 DVTQTETERMIRLVNDLLQLSKMDSRDYNFYKNSVDFVEFFNKIIERFE 467


>gi|88857213|ref|ZP_01131856.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
 gi|88820410|gb|EAR30222.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
          Length = 732

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 126/240 (52%), Gaps = 10/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +       ++++K+ F+ ++S+E+R+P+  I+GF  LL++S    L  +Q  ++ +I+
Sbjct: 353 LNQAKLDAESSEQLKSQFLANMSHEIRTPMNGILGFVQLLQSSH---LTPEQEDFLHHIN 409

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS +LL ++NDILDL+ ++A  + L+     L  +L +V            I+I+  ++
Sbjct: 410 SSSKMLLTIINDILDLSKIEANQLTLHVMPCNLTQILQDVVTLFKPACLAKGIKIEFTAN 469

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI 730
                   D  R+ QIF+ ++SNA+ F+ KG   +    + A  +N  F  +V++ G  I
Sbjct: 470 AA-YWVYCDEMRVKQIFTNLISNAIKFTLKGKVTLTLKKITATDENTQFEVNVEDTGIGI 528

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +D+   +F  F         +  G GLGLSI +  I L  G++S++S +   T    R+
Sbjct: 529 ADDVIGKLFKPFIQAQGDTTRRFGGTGLGLSISKRLIELMQGNISLTSKEHVGTQFLVRL 588


>gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 935

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L + ++  ++A ++K+ F+ ++S+E+R+P+  I+GF +LL   +    N ++ +Y++ 
Sbjct: 320 EMLRKVSKEAQQASKMKSEFLANMSHEMRTPMNAILGFAELLMNDE---TNLEKMKYLKT 376

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+L+ND+LDL+ ++A    L  S      L+ E+ ++     +   +     
Sbjct: 377 IYRSGEHLLSLINDVLDLSKIEAARFDLIISPYSPAKLVKEITETYLPMAYSKGLHFANS 436

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
              ++  +V  D  R+ Q+ + ++SN + F+ KG  V +    D    I++V++ GS + 
Sbjct: 437 ITERVPEYVDGDEFRVRQVLTNLVSNGLKFTDKG-YVSVLLDYDGHHLIYTVQDTGSGVS 495

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +F  F+        +  G GLGL+I +  + L GG +   S     + +  RIP
Sbjct: 496 REEIDKIFEPFIQADGTMSRKFGGTGLGLTITKKIVELMGGSIRFESKVGEGSKVTVRIP 555

Query: 790 S 790
           S
Sbjct: 556 S 556


>gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2142

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 166/396 (41%), Gaps = 33/396 (8%)

Query: 415  MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +FE ++   ++L   ++    V    ++ L+E + +         +N    +L K  +  
Sbjct: 1304 LFEGDIKAVIEL-ASFHKFSDVHLGFLEQLTESIGIV---LNTIAANMRTEALLKQSQAL 1359

Query: 474  LSP-GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                      +  T  R   +++       ++    +E +     L+  +          
Sbjct: 1360 TDELRKQQEELTETNKRLEQQANSLQQSEELLKRQQEELRRTNEELQEKAK--------- 1410

Query: 533  LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            L + Q         +  +A+RAL EK E L    + K+ F+ ++S+ELR+PL +++  + 
Sbjct: 1411 LLSEQKNEVEHKNLEVEQAKRALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQ 1470

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
             L  +  G+L  +Q ++   I AS + LL L+NDILDL+ +++G M ++   +   DL  
Sbjct: 1471 TLSENTDGNLTGRQVEFARTIHASGSDLLELINDILDLSKIESGTMTVDVGPLRFGDLRE 1530

Query: 653  EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             V+++      + +++  +  +G L      D +RL Q+   +LSNA  F+  G  V L 
Sbjct: 1531 FVERTFRQVADKKSLQFDISLEGALPGEVQTDAKRLQQVLKNLLSNAFKFTESG-QVTLS 1589

Query: 712  AARDNGD--------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
              R                    F V++ G  IP+D  + +F  F         +  G G
Sbjct: 1590 IQRARAGWSSDHPILRTAPTVVAFVVRDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTG 1649

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            LGLSI      L GG + + S     +T    +P K
Sbjct: 1650 LGLSISREIARLLGGEIRLESEVGRGSTFTLFLPLK 1685


>gi|303241000|ref|ZP_07327510.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302591425|gb|EFL61163.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 382

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILL 621
           K    K+ F  ++S+EL++PLT I+G   L+  K S +     K S+++  I  +   LL
Sbjct: 115 KCTNEKSEFFYNMSHELKTPLTVILGAIQLIEQKNSVIEVDRRKSSKHITTIKQNCYRLL 174

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+N++LDL+ +++G +K N     +  L+ E+  S+     + ++ I+  +  +     
Sbjct: 175 RLINNMLDLSRIESGYIKSNMINCNIVYLVEEISLSVIPYAEQKSLTIEFDTTSEEIISA 234

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  ++ +I   +LSNA+ F++ G  + +  +  N     SVK+ G  IP+DM  +VF R
Sbjct: 235 VDIDKIERIILNLLSNAIKFTNPGGKISITVSAKNDKVHISVKDTGIGIPKDMLHNVFER 294

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +        +   G GLGLSIV+SF+ LH G++ + S     +  +  +P K
Sbjct: 295 YQQVDSSLTKGIEGSGLGLSIVKSFVELHDGNIKVKSEPNVGSEFHIDLPIK 346


>gi|298247995|ref|ZP_06971800.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550654|gb|EFH84520.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 853

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 123/715 (17%), Positives = 246/715 (34%), Gaps = 77/715 (10%)

Query: 113 LSFENW--LKFHHYIKLSKATEKL-RKEGQSFDLVAETQND--CAIKIEGRVSGSC---- 163
           L+   W         +L  A  +  R E   F+ V   +      +++            
Sbjct: 178 LAETRWWSCSPTSQEQLCAAIARASRGETVRFEAVVHLREGLDRHLEVVITPHRDADHHI 237

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
           A+L I  +D    + AE                 L D++  LVW     G     N  ++
Sbjct: 238 AYLIIAGIDITERKRAEAE------------LHALIDAIPQLVWITRPDGSHDSFNQRWR 285

Query: 224 KNTETEGIVFQKAIGES-RKLFKEEIKKRMISS------SALEKNFCETVSTLEHGNNKS 276
             T   G+   +A GE   +    E + R+ S+      +         +     G  + 
Sbjct: 286 DYT---GLSTAEAQGEGWMQCLHPEDRSRVRSAWQHAVQTGGGYETELRLRQGTTGEYRW 342

Query: 277 Y--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNR 326
           +  + +      G+     G + D+ ++  V  QL  + E L      +   + +   + 
Sbjct: 343 FLARAMPARGETGQILKWFGTSTDIEEQKRVEQQLKESQESLRVLAETVPQQVWVRRPDG 402

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSS 385
             ++ N+ + +   + L  +  +      L+F+   ++    ++            Y+  
Sbjct: 403 LYEYTNQRWRDYTGLTLEHIQNDRRVH--LQFIHPDDQDGHLVHMQHALDTGAMFEYEQR 460

Query: 386 ETHKDTWHLPNGQTLHVIVTSNP---RGGTIW----MFENLTVQVDLETKYNTLVKVQGE 438
                T     G+    +  + P     G I        ++  Q   E       +    
Sbjct: 461 LKQCQT-----GEYRWFLSRAMPMRDEAGQILKWFGTNTDIEEQKRTEEALRQSQERVNV 515

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            ++    G+  F  D ++  +N  +  +       L  G               E     
Sbjct: 516 LMNSSIIGIF-FAEDEQVVEANETYLRMTGYSREDLCEGR-----MNWLHMTPPEYLART 569

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L A    +        +        S L   +  +      L  +       A + L   
Sbjct: 570 LEAQQELATQQSLTPYEKEYVCKDGSCLPVLVGGVILEHHPLQAIGFVLDNSARKEL--- 626

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                  ++ K+ F+   S+ELR+PLT +   T LL            +  +  +     
Sbjct: 627 -------EQRKDDFISMASHELRNPLTALKLHTTLLHRQLAKQGLQGSAPALSSMETQIN 679

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  LV ++LD++ + AG ++  + T+ L+ LL E+  ++      + I   ++      
Sbjct: 680 KVTRLVEELLDVSKIQAGRLEYVWETVDLDALLREITDTVQQTHPSHRI---LVRGAVQT 736

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S +ADR RL Q+F+ +LSNA+ +S     V +  +         V+++G  IP +    +
Sbjct: 737 SLMADRDRLGQVFTNLLSNAVKYSPSAEAVEMDLSTSAETVTIRVQDHGLGIPREKRDKI 796

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+RF   A   Q+   G+G+GL IV   +  +GG +++ S     +T    +P K
Sbjct: 797 FDRFYRVADPRQKAIPGLGMGLYIVAEIVKHYGGTITVESEPGKGSTFQVMLPRK 851



 Score = 38.0 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 28/259 (10%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
             A+ + D    + + N S   +       +   P         R A +L     ++  +
Sbjct: 26  PGALFVVDDAAKIVYANASAQTITGATREDVLGKP-------LWRGAPQLVSTALYQAVQ 78

Query: 376 ENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           +      ++    +  +  P  +T LHV ++    GG +            E       +
Sbjct: 79  QTR----QTQAPSEVEYVSPVTRTWLHVQLSPT-VGGLMVQVHQGRAAARREAPVPQDER 133

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSN--PAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           +  E ++ L   + V  P+G +   N  P   +  + EE    P      +A T     +
Sbjct: 134 LSIEDLNGLFSRIGVLTPEGIVLEINEVPLAEARVRREEVIGYP------LAETRWWSCS 187

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTMLTF-----VNV 545
            +    L AAI  +   E    +  + L    D  LE  I P  +A   + +     +++
Sbjct: 188 PTSQEQLCAAIARASRGETVRFEAVVHLREGLDRHLEVVITPHRDADHHIAYLIIAGIDI 247

Query: 546 TDSVRAERALTEKNEALRK 564
           T+  RAE  L    +A+ +
Sbjct: 248 TERKRAEAELHALIDAIPQ 266


>gi|298247019|ref|ZP_06970824.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549678|gb|EFH83544.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 648

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 104/643 (16%), Positives = 214/643 (33%), Gaps = 48/643 (7%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           +R    D + S + ET  K       +  +    D+L   VW     G + + N  ++  
Sbjct: 19  VRERENDSMVSTIKETKYKV------MEEWHAAIDALPQCVWLIRPDGSVAYTNKRWRDY 72

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMI--SSSALEKNFCETVSTLEH--GNNKSYKIVR 281
           T T     Q           +  +  ++  ++    + +   +   +   G  + + +  
Sbjct: 73  TGTSTEQEQGDGWLQYTHPDDRQRVLLVWQNAVQTGEPYEAELRLRQGTTGAYRWFLLQA 132

Query: 282 VLNSFGE------AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
             +   +       G   D+  +     QL  + E    +   +   +     +  +++ 
Sbjct: 133 TSHKDSQGTILNYVGTCADIEGQKRAEQQLKESRENWRVLAETVPQLVWTTSSDGLVEYW 192

Query: 332 NRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           NR + +         L    S     +  +    +  Q          +   K  +T   
Sbjct: 193 NRQWYDYTGSSPEQALGDGWSQFLHPDEYQHTLMVWHQA---LETGEPYERLKEGQTGGY 249

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            W L   + + V   +           ++  Q   E       +     ++    G+ + 
Sbjct: 250 RWFLV--RAMPVRDDTRQIVKWFGTCTDIDDQKRTEEALRLSQERVNLLMNSSIIGIFL- 306

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGT-HIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
             D  I  +N  F  +       L         +    +  ++     D+ A   T+   
Sbjct: 307 AEDDAIVDANATFLQMTGYRREDLQQRNVRWATMTRPPAASFSHQVYQDVVAQHCTT--- 363

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
                +  L     S L   +  +     +L  V       A + L          D+ K
Sbjct: 364 ---PFETELVCKDGSHLPVLLGGVAFHDQVLQGVGFVLDNSARQEL----------DQRK 410

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           ++F+   S+EL++PL ++   T LL         S        +      +  LV+++LD
Sbjct: 411 DAFLGMASHELKTPLASLKLQTQLLCKKLGKQDLSNVEVVCARMEGQLNAITRLVDELLD 470

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           L+ + AG ++  +  + L+ +L EV   +     +    I V         V DR RL Q
Sbjct: 471 LSRIQAGKLEYAHEMVDLDAMLKEVMDVLQHI--QTTHTIVVQHAAPPVFVVGDRDRLAQ 528

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--H 747
           +F  +LSNA+ ++     + +           S+++ G  IP ++   +F RF       
Sbjct: 529 VFLNVLSNAIKYAPDAPQIEVTLTTSAEAVTISIRDQGIGIPRELQGRIFERFYRAVPLQ 588

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    G+G+GL IV   +  HGG + + S     +T +   P 
Sbjct: 589 QRAFPGLGMGLYIVSEIVKHHGGTIRVESERGKGSTFHITFPL 631


>gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1223

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 167/413 (40%), Gaps = 36/413 (8%)

Query: 400  LHVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV-FGPDGR 455
            LH+    +  G  +      +++T +V +E              D+L  GV +   P   
Sbjct: 676  LHLRTLRDVSGNAVVTRGAIQDVTYRVSIENALRRSESSYRALADNLPNGVVLLVDPADI 735

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            ++++  A + L    ++          I A  +         +L   I+++    R    
Sbjct: 736  LRVA--AGQGLHSLLDSGAPC------IPAPYTTILPSPLATELMPLIMSA----RHGTT 783

Query: 516  GTLEL-LSDSVLEYSIIPLPNA---------QTMLTFVNVTDSVRAERALTEKNEALRKA 565
               E+    +V +   +PLP             ML   +VT   + E  +    +     
Sbjct: 784  AHREIPYGAAVFDVVALPLPGETHRTEGVAHDVMLLLQDVTSRKQWEEQMRASRDEAAAM 843

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             E+K+ FV ++S+E+R+PL+ I+G  D+  T++     +    Y   +   +  LL ++N
Sbjct: 844  SELKSQFVANISHEMRTPLSGILGIADVALTTEGNP--ALLRNYFSMVQNVAEGLLGVIN 901

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
            D+LD + ++AG M L+     L+  + +    +A +     + +++     L  +   D 
Sbjct: 902  DLLDFSRLEAGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNGLPLTLRGDP 961

Query: 685  QRLLQIFSKILSNAMDFSSKGST-VILK----AARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL QI   ++ NA+ F+ +G+  V +        D    +F++++ G  IP +    +F
Sbjct: 962  LRLRQILVNLVGNAVKFTPQGTVHVDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIF 1021

Query: 740  NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              F         Q  G GLGL+I    + L GG + + S+    +     +P 
Sbjct: 1022 ESFAQADGSYSRQHTGSGLGLAISRHLVELQGGDIGVQSTPGEGSVFWFTLPL 1074


>gi|312890095|ref|ZP_07749639.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297627|gb|EFQ74752.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 936

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 11/265 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           AQ+        + +   +      E   KA++ K+ F+  +S+E+R+P+  ++G   LL+
Sbjct: 386 AQSEELRALNEELLSQRQQEQAAREDAEKANQAKSVFLATMSHEIRTPMNGVLGMASLLE 445

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   +LN++Q +YV  I  S   LL++++D+LD + +++G + L+     L   + EV 
Sbjct: 446 ET---TLNNEQREYVSTIKNSGETLLSVISDVLDFSKIESGKLDLDPHQFNLRQCIEEVM 502

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILK 711
              + K+    + +      ++    +AD  RL Q+   ++ NA+ F+SKG     V L 
Sbjct: 503 DIFSGKVARIGLDLVYQIGYEVPAHIIADSLRLKQVLINLVGNAIKFTSKGEVFLGVSLL 562

Query: 712 AARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
           +  D+   +  F VK+ G  IP D    +F  F        RR  G GLGL+I E  ++L
Sbjct: 563 SRTDDHSLELAFEVKDTGIGIPRDKLPRLFKAFSQIDSSTTRRYGGSGLGLAICERLVHL 622

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
             G +++ S  +  TT    I ++E
Sbjct: 623 MEGQITVESQLDLGTTFRFSIKAEE 647


>gi|15964755|ref|NP_385108.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|7531256|sp|Q52969|Y1002_RHIME RecName: Full=Uncharacterized sensor-like histidine kinase R01002
 gi|15073933|emb|CAC45574.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021]
          Length = 525

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 97/376 (25%), Positives = 163/376 (43%), Gaps = 29/376 (7%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY---YNESDGWDLF 500
           ++G   F P   +   N A+           + G  +       S Y     +  G    
Sbjct: 89  TDGEVEFAPAPELPDLNAAYDLFAGLVTVHDTRGHVLSVHGRDASEYLKLMRDPHGRGFI 148

Query: 501 AAIITS-------------FDDERKSLQGTLELLSD-----SVLEYSIIPLPNAQT---- 538
             I  S              D ER ++   LE  S      + +   + PL +A+     
Sbjct: 149 EQIHVSDRIAFLRAIDSLRLDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLA 208

Query: 539 -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    +V++  R +     K      A++ K  F+  VS+ELR+PL  I+GF+D+L   
Sbjct: 209 IVAQSRDVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGE 268

Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G L N +Q +YV  I  S T LL++VN +LD++ ++AG  +L      + + +   + 
Sbjct: 269 YFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEA 328

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            ++ +  E  +R+       +G   AD++   QI   ++ NA+ F+ +G  V + AA + 
Sbjct: 329 MLSHQAREKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEG 388

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V + G  I  D  + +   FV   N +  +  G GLGLS+V+    LHGG VSI
Sbjct: 389 NMLKLTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSI 448

Query: 775 SSSDEGVTTINCRIPS 790
            S++   T I   IPS
Sbjct: 449 RSAEGEGTVIVVTIPS 464


>gi|299143500|ref|ZP_07036580.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517985|gb|EFI41724.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 593

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 165/393 (41%), Gaps = 34/393 (8%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKL 458
            V V SN   G +  MF  LT +++       L K +  TI ++++EGV      G +  
Sbjct: 227 RVEVKSNDEIGNLGSMFNYLTEELNTTINQMNLEKSKLNTIFNYMAEGVIAVSRSGYLIH 286

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +NP  R +   +EN L     +  +      Y + S                  SL+G  
Sbjct: 287 ANPIAREILDLDENYLKTKQDLTKLNIFGINYSDNS------------------SLEGES 328

Query: 519 EL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           EL + D   +    P    +     + V      +             D ++  FV +VS
Sbjct: 329 ELEIKDKFFKIKYAPYKKGRLTNLGLIVVLQDITKE---------HTLDVMRKEFVANVS 379

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++P+T I  +++ L  SK+     +   +V+ I+  +T +  LV+D+L L+ +D   
Sbjct: 380 HELKTPITTIRSYSETLLDSKMEP--DEVKHFVKIINRENTRMGRLVSDLLQLSNIDYKT 437

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
               Y  I   D+L++  + ++  + E N  I +     + +  ADR  L QI   I+SN
Sbjct: 438 SNYVYEEIDTYDILSQTLEGLSVMIKEKNHNISLEIPMDIRNIYADRHALDQILMNIISN 497

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVG 755
           A+ ++ +G  + + A  +  +    V++NG  IPE     +F RF            G G
Sbjct: 498 AIKYTDEGGKIKISATSNYFNVNIIVEDNGIGIPESDLPRIFERFYRVEKGRSRAMGGTG 557

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSI        GG + I S  +  T I+  +
Sbjct: 558 LGLSIARELTLSMGGDIKIDSKFKEGTKISISL 590


>gi|281354910|ref|ZP_06241404.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317790|gb|EFB01810.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1480

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 159/382 (41%), Gaps = 23/382 (6%)

Query: 419  LTVQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            + + ++ E    TLV+ + E     + L   + +F    R+   N A   L      ++ 
Sbjct: 960  IEILIERELGRKTLVRSESEKTLVFNMLDIPLILFDAQNRVVRVNAAAEKLAGRSRAKI- 1018

Query: 476  PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                   +A  C R +   +       +  +        QG  ++L  +    S      
Sbjct: 1019 -------LAEPCYRSFCRREAPPPDCMVRLTLQTGL-PQQGEAQILGKTYQVASRPLFEE 1070

Query: 536  AQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             + +    +  D   A +    L    E+ + AD  K+ F+  +S+E+R+PL  +IGF++
Sbjct: 1071 GKLVNVLQSFVDMTEARQQSEKLKAAMESAQAADRAKSFFLATMSHEIRTPLNAVIGFSE 1130

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL+   L     +Q +Y+  I+ + T LL L+NDILDL+ ++AG +++    I    L  
Sbjct: 1131 LLQNQSLSP--EEQVEYLHSINLAGTALLRLINDILDLSKIEAGEVRIVAEKIDFTALCG 1188

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LK 711
            E+      K+ E  +  K+     L     D Q++ Q+   ++ NA+ F+ +G   + ++
Sbjct: 1189 EINAIFTQKVMEKKLYFKLEVPSGLPFLWLDGQQMRQVLLNLVGNAVKFTGEGGVTLKVE 1248

Query: 712  AARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
              R+    G    ++ + G  I  +  + VF  F+ +         G GLGLSI +  I 
Sbjct: 1249 FRREGPEAGTLEIAIIDTGIGISREYQQKVFQPFIQDNAVRDRAYEGTGLGLSISQRLIR 1308

Query: 767  LHGGHVSISSSDEGVTTINCRI 788
               G + + S     +     +
Sbjct: 1309 KMDGRLLLESEPGRGSCFTVVL 1330



 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/445 (14%), Positives = 157/445 (35%), Gaps = 63/445 (14%)

Query: 41  IILLIRQRNSLAKKVNETYSFLSEICDQLSK-YHSLLTENN----CLTIVWDGKDETPEI 95
           ++ +IR R ++ ++  +   F   I  +  +   +LLT            +  + +  E+
Sbjct: 68  VVYMIRFRAAIHRRRQDEREFRRRIYLERDRSNQALLTLEQTAKMANLAYFSCRADGSEL 127

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
                   + P  D+  +    W+          + ++L  +G+S ++    +     K 
Sbjct: 128 TLSAGANRNWPLEDSKAVPPSQWVYPEDLASFEASWQEL-TQGRSPEIEISFRAG---KG 183

Query: 156 EGRVSGSCAFLRILSLDGIYS------ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
             R     A  R ++ +G         E+ +   + +K  +   + K++ D+L   ++ +
Sbjct: 184 GARYFRLQAGARGVAEEGERRIVGCIQEVTDLRERERKFRDTDELLKIMADTLPCPIFIK 243

Query: 210 DQ-AG-DILWANISYKKNT-----ETEGIVFQKAIGES---RKLFKEEIKKRMISSSALE 259
           D   G   L +N S+         E  G    +  G      + F++  ++ + +   LE
Sbjct: 244 DASDGFRYLLSNRSHAALLNRTPEEVAGRTDAEIFGPGHEYVERFRKADREALEAGRNLE 303

Query: 260 KNFCETVSTLEHGNNKSYKIVR----VLNSFGE---AGIAIDVSKEITVNDQLTHTYE-- 310
                    +     K + +      V  S G     G+A +V++      +   +    
Sbjct: 304 SVER-----VVDAQGKVHYLHGIKGIVTQSGGRKLLIGMATEVTELEETKQRAEESKRLL 358

Query: 311 --ILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL------EFLR 360
             IL ++ V I + D   +      NR+  E   + +  +      +  +      +F R
Sbjct: 359 QAILDHVPVGILLKDPAADYRYVLWNRALSEFSGVPVEQVLGKNDFEANIYPGCAEQFRR 418

Query: 361 SANKLPEQLNWKTWKENIFSVYKSS---ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
              K+      + + E++ +V  +     THK    L  G+T             + +  
Sbjct: 419 EDAKVVATGKAEVFVEDLQTVRDTRVVYHTHKIPLELEPGKTF-----------LLGLCV 467

Query: 418 NLTVQVDLETKYNTLVKVQGETIDH 442
           +++ +  LE + N ++    + + +
Sbjct: 468 DISREWKLENEQNRMIDALNDFVRN 492



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/435 (14%), Positives = 137/435 (31%), Gaps = 39/435 (8%)

Query: 166 LRILSLDGIYSE-----LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
           +R  +      +          L+  + +  +   +      +   +     G  L  + 
Sbjct: 72  IRFRAAIHRRRQDEREFRRRIYLERDRSNQALLTLEQTAKMANLAYFSCRADGSELTLSA 131

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIK---KRMISSSALEKNFCETVSTLEHGNNKSY 277
              +N   E     KA+  S+ ++ E++          +       E       G  + +
Sbjct: 132 GANRNWPLED---SKAVPPSQWVYPEDLASFEASWQELTQGRSPEIEISFRAGKGGARYF 188

Query: 278 KI---VRVLNSFGE---AGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNR- 326
           ++    R +   GE    G   +V+       +   T E+L      L   I I D +  
Sbjct: 189 RLQAGARGVAEEGERRIVGCIQEVTDLRERERKFRDTDELLKIMADTLPCPIFIKDASDG 248

Query: 327 -YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK--ENIFSVYK 383
                 NRS   L       +A   ++ E+        +   + + +  +   N+ SV +
Sbjct: 249 FRYLLSNRSHAALLNRTPEEVAGR-TDAEIFGPGHEYVERFRKADREALEAGRNLESVER 307

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
             +      +L   +   ++  S  R   I M   +T   + + +     ++    +DH+
Sbjct: 308 VVDAQGKVHYLHGIKG--IVTQSGGRKLLIGMATEVTELEETKQRAEESKRLLQAILDHV 365

Query: 444 SEGVAVFGP--DGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
             G+ +  P  D R  L N A         E  L       NI   C+  +   D   + 
Sbjct: 366 PVGILLKDPAADYRYVLWNRALSEFSGVPVEQVLGKNDFEANIYPGCAEQFRREDAKVVA 425

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
                 F ++ ++++ T       V     IPL         + +   +  E  L  +  
Sbjct: 426 TGKAEVFVEDLQTVRDTRV-----VYHTHKIPLELEPGKTFLLGLCVDISREWKLENEQ- 479

Query: 561 ALRKADEIKNSFVQH 575
              +  +  N FV++
Sbjct: 480 --NRMIDALNDFVRN 492



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 79/624 (12%), Positives = 196/624 (31%), Gaps = 130/624 (20%)

Query: 38  IIPIILLIRQRNSLAKKVNETYSFLSE-------ICDQLSKYHSLLTENNCLTIVWDGKD 90
            I  +  +R+R    +  +E    +++       I D    +  LL+             
Sbjct: 208 CIQEVTDLRERERKFRDTDELLKIMADTLPCPIFIKDASDGFRYLLSNR----------- 256

Query: 91  ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150
               ++ +  + +   +TD ++    +     +  +  KA  +  + G++ + V     +
Sbjct: 257 SHAALLNRTPEEV-AGRTDAEIFGPGH----EYVERFRKADREALEAGRNLESV-----E 306

Query: 151 CAIKIEGRVSGSCAFLRILS-------LDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
             +  +G+V        I++       L G+ +E+ E     ++      + + + D + 
Sbjct: 307 RVVDAQGKVHYLHGIKGIVTQSGGRKLLIGMATEVTELEETKQRAEESKRLLQAILDHVP 366

Query: 204 FLVWHRDQAGDILWA--NISYKKNTETEGIVFQKAIGESR------KLFKEEIKKRMISS 255
             +  +D A D  +   N +    +E  G+  ++ +G++           E+ ++     
Sbjct: 367 VGILLKDPAADYRYVLWNRA---LSEFSGVPVEQVLGKNDFEANIYPGCAEQFRREDAKV 423

Query: 256 SALEK--NFCETVSTLEHGNNKSYKIVRVLNSF-----GEAGIAIDVSKEITVNDQLTHT 308
            A  K   F E + T+       Y   ++            G+ +D+S+E  + ++    
Sbjct: 424 VATGKAEVFVEDLQTVRD-TRVVYHTHKIPLELEPGKTFLLGLCVDISREWKLENEQNRM 482

Query: 309 YEILHN-------LTVAI-AIFDQNRYLQFHNRSFVELW---EIDLAFLATNPSNDELLE 357
            + L++       L   +  I  +N +    N     +      D  F+     N  + +
Sbjct: 483 IDALNDFVRNEQMLNRCLKTITVENDFETAVNEILKRVGENRGADRCFIFRYSDNYRVGD 542

Query: 358 FLRS---ANKLPEQLNWKTWKEN----------------IFSVYKSSETHKDT--WHLPN 396
                      P++ + + ++                  +  + +  E  ++   W    
Sbjct: 543 NCFEWVREGIAPQKRDLRDFEVERVQKLHRLIVERRIIAVNDLAQEPEIREELAAWLGKE 602

Query: 397 GQTLHVIVTSNPRGGTIW---------------------------MFENLTVQVDLETKY 429
                ++++    GG +W                           +F     +       
Sbjct: 603 PDVKSLLISEIREGGQLWGVFGLDFVRERHAITAADRETLRSAGNLFMLARERQRQMELV 662

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              V +Q + ++++   +A+F  D  I   N A        E             + C  
Sbjct: 663 ADTVALQKQLVENIDIPLAIFDLDYNIISINSAAAEDVPIGELIGKKCYS-----SLCG- 716

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----N 544
              E   W   A +  S   E+         L    L  +  P+ +    +  +     +
Sbjct: 717 -CAEPPSWCPHARVRLSGRSEQVDF-----TLKGRNLHLTSQPIFDRDGKIRHIFEAAVD 770

Query: 545 VTDSVRAERALTEKNEALRKADEI 568
           +TD+ R    L E    L +++ +
Sbjct: 771 MTDAQRQNETLAENRNRLLESNNL 794



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 17/166 (10%)

Query: 278  KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            ++VR      E  I  ++ ++  V  +   T  + + L + + +FD    +   N +  +
Sbjct: 951  RMVRAAARIIEILIERELGRKTLVRSESEKTL-VFNMLDIPLILFDAQNRVVRVNAAAEK 1009

Query: 338  LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            L     A +   P               P+ +   T +  +    ++            G
Sbjct: 1010 LAGRSRAKILAEPCYRSFCRREAPP---PDCMVRLTLQTGLPQQGEAQIL---------G 1057

Query: 398  QTLHVIVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGET 439
            +T  V        G     +  F ++T       K    ++     
Sbjct: 1058 KTYQVASRPLFEEGKLVNVLQSFVDMTEARQQSEKLKAAMESAQAA 1103


>gi|237654220|ref|YP_002890534.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237625467|gb|ACR02157.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1023

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 156/393 (39%), Gaps = 15/393 (3%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPD-GRIKLSNPAFRSLW 467
           GG +    +   +     +   + + +   I +    GV +  P   RI  +NP F ++ 
Sbjct: 319 GGYLVWRRDREQRERATLQARQIAEARFRVIFEQAPLGVVLLDPRTRRITEANPRFAAIV 378

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSV 525
                 L     I  +        +      L A  I  +   ++ L   GT   +S + 
Sbjct: 379 GRSVGELVGVDPI-ALTHPDDVAESLRQLGRLDAGRIAGYRLNKRYLRPDGTPVWVSLAF 437

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
               +      + +    +++  +  E  L E + A   A+  K+ F+ H+S+E+R+P+ 
Sbjct: 438 APVQVASEDAPRYLGIVEDISARIEMEERLREASAAAAAANAAKSEFLAHMSHEIRTPMN 497

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G   +L+   L      Q   V  I  +   LL +++D+LDL+ ++AG +++     
Sbjct: 498 AVLGLAQVLEREPLAPA---QRDMVGRIRGAGASLLAILDDVLDLSKIEAGQLRIEPRPF 554

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L  LL  +   +        + +++       G    D  R+ QI   ++SNA+ F+ +
Sbjct: 555 DLRALLANLDSLMGQAARAKGLALRIEPPALPPGQLRGDGLRIEQILINLVSNAIKFTER 614

Query: 705 GSTVILKAARDNGDFIF----SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           G   +   A + GD        V++ G  I  +    +F  F         +  G GLGL
Sbjct: 615 GEVSLRVRADEVGDVRLRLRAEVRDTGIGIAPEAQARLFAPFTQADAGIARRFGGTGLGL 674

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SI +  + L GG + + S     +T    +P +
Sbjct: 675 SICKRLVELMGGAIGVHSQPGLGSTFWFELPLE 707



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 36/235 (15%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIK----KRMISSSALEKNFCETVSTLEHGNNK 275
            + +      GI+          +            ++ +   E+     + TL  G   
Sbjct: 248 PAARAALGERGILSGGRDYRGVPVLAYAAAVEGTPWLMLAEIDEREAYSGIRTLTWGMGV 307

Query: 276 SYKIVRVLN-SFGEAGIAIDVSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQN-RYL 328
              +  +L  S G      D  +      Q     E     I     + + + D   R +
Sbjct: 308 VMALGLMLVYSGGYLVWRRDREQRERATLQARQIAEARFRVIFEQAPLGVVLLDPRTRRI 367

Query: 329 QFHNRSFVELWEIDLAFLATNPSN-----DELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
              N  F  +    +  L           D++ E LR   +L                  
Sbjct: 368 TEANPRFAAIVGRSVGELVGVDPIALTHPDDVAESLRQLGRLDAGRI------------- 414

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNT 431
           +       +  P+G  + V +   P           + + E+++ ++++E +   
Sbjct: 415 AGYRLNKRYLRPDGTPVWVSLAFAPVQVASEDAPRYLGIVEDISARIEMEERLRE 469


>gi|157374126|ref|YP_001472726.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157316500|gb|ABV35598.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 938

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 243/638 (38%), Gaps = 59/638 (9%)

Query: 200 DSLDFLVWHRDQAGDILWANISYKKNTETEG-IVFQKAIGESRKLFKE---EIKKRMISS 255
           D   F +    + G IL  N S++   +    +V  +       LFK+         I  
Sbjct: 8   DLTPFPIMVCSKEGSILSVNSSFQDEFKVSNEMVSGELAYLFFNLFKDLSVTNSSAFIHH 67

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND-QLTHTYEILHN 314
              +K F  T+S        +  I     + GE  + ++   E      Q  H  E L++
Sbjct: 68  LIEKKQFFSTLSVNSQNICVNVSINDSPLTPGEYWLIVNRCGECRAKKYQAKHKLERLNH 127

Query: 315 L----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
                 + I  +  +    + +  F EL  +++    +      +++  R  +KL   L+
Sbjct: 128 AIKGANIGIWEYSPHSKFCYFSLKFKELIGLEIDTSLSWQHFKSMIDP-RDQHKLDVYLD 186

Query: 371 WKTWKENIFSV-YKSSETHKDTW-HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
                   F + +++  T K+ W  L +   L +   S   G  I    + T   +    
Sbjct: 187 DIFEPGTRFHLEFRAQITGKERWFELRSEAVLSIDNHSTHTGSLI----DCTEAKETLFA 242

Query: 429 YNTLVKVQGETIDHL----------SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            +   + +   +D            SE   V+  D R   +N  F    +   N      
Sbjct: 243 LHDANESKNIALDAGNIGNWRAEIDSENNWVWDWDSR---ANNMFALHPEDIGNLDKWAE 299

Query: 479 --HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE------------LLSDS 524
             H  ++    +   +     +LF     S     + +    +             +   
Sbjct: 300 RLHPDDLDRIIAAVDHSLSTGELFDQQYRSILPHGEVIYVHAKGKVGQNRDKQNCRIDGI 359

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDS-VRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            ++ S I    A+       +     +  +   +      +A++ K+ F+  +S+ELR+P
Sbjct: 360 CIDQSPIFKIQAELQKANDELEARVTQRTQEFQQAKVRAERANQAKSEFLSMMSHELRTP 419

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  +IG  DLL  SK    N +    +E  + S+T L+ ++NDILD+  +++G M+L   
Sbjct: 420 MNAVIGSLDLLTLSKQ---NPESMSLIETATTSATNLIYILNDILDINKIESGKMQLEQR 476

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
              + ++++ V Q      H+  + + +  D ++   +  D  ++ QI   +L NA+ F+
Sbjct: 477 DFSITEVIDNVVQVFLPLAHKKRLNLHIYEDPQIPKLLEGDAVKVRQILFNLLGNAIKFT 536

Query: 703 S-----KGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
                  G   ++    ++ D I    FS+ +NG  I ++  K +F  F+       R  
Sbjct: 537 HTVEGKPGEIRLITNISEHNDIIYKISFSIIDNGIGIDKETQKKLFTPFMQAQRSTTRKY 596

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL+I  +  ++ GG + ++S+ E  +T    +P
Sbjct: 597 GGTGLGLAISGNLTSMMGGEIKLNSTPEQGSTFTVVLP 634


>gi|51246144|ref|YP_066028.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50877181|emb|CAG37021.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1102

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 162/393 (41%), Gaps = 30/393 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +   +           ID     +      G ++  N +   ++      +  G ++R +
Sbjct: 350 EKTAQLRKSELRAEAIIDKAVIPIITIDETGIVQSFNRSAEKMFGYGPEEI-IGRNVRML 408

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNAQTMLT 541
                R  +                     L G  +   +    L  S + L     +  
Sbjct: 409 MPEPHRSSHNKYVDHYLKTGRMKAIGVGNKLTGVRKDGVEFPMHLSVSEVRLEKRIFVGM 468

Query: 542 FVNVTDSVRAERALTEKNEALRKADE------------------IKNSFVQHVSYELRSP 583
            V++++  RAE AL +  + L +  E                   K++F+ ++S+E+R+P
Sbjct: 469 VVDLSEINRAEEALRKHRDNLARLVEERTYELKIAKEAAETANIAKSAFLANMSHEIRTP 528

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           + +++GF  +   S+L  L ++  +++E   +S+  LL ++NDILD++ +++G   L  +
Sbjct: 529 MNSVLGFIQITLESRL--LCAELRRHLETAYSSAKGLLIIINDILDVSKLESGEFALEAT 586

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
            + +  ++ E  +++ ++  E  I +    D  L   ++ D  RL Q+   ++ NA+ F+
Sbjct: 587 CLDMPRIVQEALKTVESQAEEKGIGLDFHFDADLPHCYLGDPTRLGQVIINLVGNAIKFT 646

Query: 703 SKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
             G   I   A D GD    FSV + G  +  +   ++FN F        R   G GLGL
Sbjct: 647 KTGKITIGVRASDQGDASLHFSVADRGIGMTAEQAANIFNPFTQADISTARCYGGTGLGL 706

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR--IP 789
           +I +  + L GG + + S      T +    +P
Sbjct: 707 TISKQLVELMGGRIWVESELGRGVTFHFTAQLP 739


>gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 956

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 12/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  IIGFT+LL  S    L  +Q  ++  I
Sbjct: 277 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS---PLPRQQRDHLNTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VI 672
             SS ILL ++NDILD + ++AG + L+     L D++ EV   +A   H  N+ +  ++
Sbjct: 334 RKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLV 393

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNN 726
            +    + + D  R+ Q+ + +++NA+ F+  G  V+  +  D            S+ ++
Sbjct: 394 YNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEDEDTEHNRVTLRLSITDS 453

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +     +S+FN F         Q  G GLGL+I +  +   GG + + S     +T 
Sbjct: 454 GVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGSTF 513

Query: 785 NCRI 788
              +
Sbjct: 514 WFTL 517


>gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1293

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 125/688 (18%), Positives = 235/688 (34%), Gaps = 83/688 (12%)

Query: 130 ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189
           A E + + G+   L    + D     +G   G      IL    +     E     + L 
Sbjct: 330 AFEAMTRTGEP--LAVTARLDGLTDDQGEPIG-----WILIATPVE----ERQRAQQALQ 378

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
               + +++ +++   +   D    I+ AN +++       +   +       L      
Sbjct: 379 CQKRLTQLILETVAVGIVLLDDQLRIVQANRTFEAMVGV-SLADLEGRNWLDVLKPNPPG 437

Query: 250 KRMISSSALEKNFCETVST-----LEHGNNKSYKIV--RVLNSFGEAGIAI---DVSKEI 299
                  A  +     +          G +    +   R++   G   + +   D S  I
Sbjct: 438 DLAHRLHAALEGRSLAIPGELSFQRPDGQSLVATLTLGRLVVEEGRPSLVVTLEDASDRI 497

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
                L   + +L ++ +A         LQF            +A     P  +ELL  L
Sbjct: 498 RDRRNLEAAHRLLESIQLA--------QLQF------------IAGEEDEPILEELLSRL 537

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
                      +    E +  +   +        L     L        +GG I    + 
Sbjct: 538 VELT----DSEFGLLCELVPPLDGPASGIPRLRPL---VALDRFTIHARKGGEI----DQ 586

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T    L  ++  L ++  + +    +GVAV  P G I                       
Sbjct: 587 TTS-TLGGRFLELERLFRDVLTQ-RQGVAVHDPLGEI------AAQRGSKPPRSQRSEIR 638

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPN-- 535
             ++A+       +      F  +     ++     G           L   + PL +  
Sbjct: 639 SGSLASRVGLSAPDHPPIIEFLGMPLMLGNDLVGTVGVANRPGGYPPDLLNYLQPLLHTA 698

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +           AE  L        +A+  K+ F+  +S+E+R+P+  ++G T+LL 
Sbjct: 699 AGILKALRQRQSQQMAEVELRVAKLQAEEANRAKSVFLATMSHEIRTPMNAVVGMTELLL 758

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    L  +Q ++ E I AS   LL L+NDILDL+ +++G ++L    + L  ++    
Sbjct: 759 DT---PLTPEQREFTETIRASGNQLLGLINDILDLSKIESGRVELEEGPVRLRLVIERCL 815

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           + +A + H   + +    DG L   +  D  RL QI + +LSNA+ ++  G  V+  +  
Sbjct: 816 ELVAARAHAKGLELAARLDGTLPEVIRGDDLRLRQILTNLLSNAVKYTDTGEVVLTASWH 875

Query: 715 DNG------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
                              +V+++G  IP+     +F  F      G RR  G GLGL+I
Sbjct: 876 AGDLSAPLDSPKRSPRLEIAVEDSGIGIPDAQKPRLFQAFQQLDAAGHRRTGGTGLGLAI 935

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
               +   GG + + +   G +     I
Sbjct: 936 TRKLVEKMGGTIHVENRPGGGSRFVFNI 963



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 136/426 (31%), Gaps = 39/426 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS----YKKNTETE 229
           +  EL       ++       ++V+ D +D  V   D    I+  N      +   +ET+
Sbjct: 111 VRGELNRLEALKERQRR---GYRVVVDEMDEAVLILDNQERIIEINRRAIEVFAAQSETD 167

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-----------EHGNNKSYK 278
            +  + A   S +   +    +  + +    +   +   +            +G   S  
Sbjct: 168 LVGREVADLISPESRDDHDLSQRRAGAVCRASRGASRMLVRSNATYLRGRRLNGEGFSMD 227

Query: 279 IVRVLNSFGEAGIA---IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
           +V +L        A    D++        L    + +   + A+ I D      F N + 
Sbjct: 228 LVVLLLDPQAQTTAYVVRDLTTRRKTELDLVRVNKAVLGTSDAVLIGDGQGRTVFVNPAA 287

Query: 336 VELWE--IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             ++   ++       P+     + +   N L       +W+    ++ ++ E    T  
Sbjct: 288 ERVFGYTLEDYAQHGGPTL-LFCDRVEGVNILGRAAQGHSWQGAFEAMTRTGEPLAVTAR 346

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           L +G T        P G  I +   +  +   +       ++    ++ ++ G+ +    
Sbjct: 347 L-DGLT---DDQGEPIG-WILIATPVEERQRAQQALQCQKRLTQLILETVAVGIVLLDDQ 401

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNI-----AATCSRYYNESDGWDLFAAIITSFD 508
            RI  +N  F ++       L     +  +          R +   +G  L  AI     
Sbjct: 402 LRIVQANRTFEAMVGVSLADLEGRNWLDVLKPNPPGDLAHRLHAALEGRSL--AIPGELS 459

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            +R   Q  +  L+   L   ++       ++T  + +D +R  R L   +  L      
Sbjct: 460 FQRPDGQSLVATLTLGRL---VVEEGRPSLVVTLEDASDRIRDRRNLEAAHRLLESIQLA 516

Query: 569 KNSFVQ 574
           +  F+ 
Sbjct: 517 QLQFIA 522


>gi|254522090|ref|ZP_05134145.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219719681|gb|EED38206.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1168

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 92/412 (22%), Positives = 164/412 (39%), Gaps = 30/412 (7%)

Query: 403  IVTSNPRGGTIWMFENL--TVQVDLETKYNTLVKVQGETIDHLSEG---VAVFGPDGRIK 457
            +V   P G  ++  E +  +V+          V+   + +D   +    +A    D RI 
Sbjct: 621  LVAGTPAGVVVFDPEQVRPSVRRAPLVIERVEVRRNEQVLDLTHDAPLQIADGDRDLRIV 680

Query: 458  L---------SNPAFRSLWKTEENRLSPGTHIRNIAATCS----RYYNESDGWDLFAAII 504
                      SN     L   + + +  G     + +       R   ++   D   + +
Sbjct: 681  ARLLSFADSASNTYRYRLAGYDPDWVEVGPAGERLFSRLPPGSYRLEVQARSADHVWSRV 740

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             S   E +        LS  ++  SI  L  +     +        A +    K E   +
Sbjct: 741  QSL--EFRVQPPWWRSLSGLLVLASIALLLTSWFAWLYRRRLQRRHAYQLALHKQELAEQ 798

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A   K  F+ ++ +E+R+P+T ++G ++LL  S    L+ +Q  Y + I  +   LL+LV
Sbjct: 799  ASAAKTRFLANLGHEIRTPMTGVLGMSELLLAS---PLDPQQRGYTQSIRHAGEHLLHLV 855

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            ND LDLA +++G ++L      L+ LL ++   +     +  +R  + +    G     D
Sbjct: 856  NDALDLARIESGRLELQQKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLPPGLQATGD 915

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNR 741
              R+ QI   +LSNA+ F+S+G T+ L A  D       F V++ G  I ++  + +F R
Sbjct: 916  AMRVRQILLNLLSNAVKFTSRG-TITLHARSDGELRALHFEVRDTGPGISQEQQQRLFRR 974

Query: 742  FVSNAHRG---QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F          Q  G GLGL+I         G + + S     T     +P 
Sbjct: 975  FEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1026


>gi|172039492|ref|YP_001805993.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700946|gb|ACB53927.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1195

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 27/366 (7%)

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRL-------SPGTHIRNIAATCSRYYNESDGW 497
           +G+  +         +P +  +   E   L       S   H  ++        N   G 
Sbjct: 588 DGIWDWDLRNDTVYYSPVWMKILGYENKPLPNLLSTWSDNVHSDDLEQVMKDVQNHLQGN 647

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
                 I      R      +E     + +    P    + + T  ++T+   A+ AL +
Sbjct: 648 TKIYENIHRIRH-RDGHYLWIETKGKCIQDQQGQPY---RLVGTITDITEKKVAQEALKK 703

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E    A+  K+ F+ ++S+E+R+P+  I+GF DLL        + +   Y+E +++  
Sbjct: 704 AKEIAEVANNAKSEFLANMSHEIRTPMNAILGFCDLLDKRI---TDERSRHYLESVASGG 760

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +LL+L+NDILDL+ +++G +++ +  I L  L+ E+KQ       E NI + V  + ++
Sbjct: 761 KMLLSLINDILDLSKIESGKIEIIHEPIDLRGLIFEIKQMFVETAKEKNIELLVNINNQV 820

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNGD------FIFSVKNN 726
               V D  RL QI   ++ NA+ F+ KG   + +K+     D            S+++ 
Sbjct: 821 PDVIVFDEVRLRQILFNLVGNALKFTEKGYVKISVKSQLLPSDKNHHPSYCSLEISIEDT 880

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D  K VF+ F  +      +  G GLGL+I      +  G + + S     +  
Sbjct: 881 GIGIALDQRKRVFDVFTQSEGQSNRKYGGTGLGLTITNRLTEMLKGIIDLESELGKGSIF 940

Query: 785 NCRIPS 790
               P 
Sbjct: 941 TVSFPK 946


>gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 693

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 164/396 (41%), Gaps = 6/396 (1%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           H  +++  R   + +   +  +  +        +   +   +  EG+ +   +GR    N
Sbjct: 267 HARMSATLRRANLELEARIQERDRVSAILTESERKYRDLYQNALEGIFITSLEGRFLSVN 326

Query: 461 PAFRSLWKTEENR--LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           PA   +         L     I +          E          +  F+ E +   G+ 
Sbjct: 327 PAMVRMLGYGSETELLVGLLDIGSQLYVDPARRGEMLRQMREKGTVQDFEAEMRRRDGST 386

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             LS +                +  +VT+  RA   +    +    A+  K  F+ ++S+
Sbjct: 387 VWLSLTARALRNSAGQITSFQGSCEDVTERRRAVEIMRVAMQQSEMANRAKGEFLANMSH 446

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           ELR+PL  IIGF++++    LG + N   ++Y   I  S  +LL+++N+ILDL+ ++ G 
Sbjct: 447 ELRTPLNAIIGFSEIIAAQSLGPIGNPAYAEYASDIHDSGRVLLDVINEILDLSAIETGR 506

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L   T+ +  ++    + I  +  +  + ++   D  L    AD   L QI S +LSN
Sbjct: 507 RELKERTVDIGRVVRGSLRLIRERALQGGVTLETALDETLPLVRADETALKQILSNLLSN 566

Query: 698 AMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
           A+ F+  G  +   A   ++G  + +V++ G  +  +        F            G 
Sbjct: 567 AVKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPEDLAHAMEPFRQVEKPLTRHAGGA 626

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL +V++ ++LHGG   + S+ +  T  +  +P+
Sbjct: 627 GLGLPLVKALVDLHGGSFELESTPDAGTLASVWLPA 662


>gi|325104428|ref|YP_004274082.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM
           12145]
 gi|324973276|gb|ADY52260.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM
           12145]
          Length = 641

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 162/381 (42%), Gaps = 27/381 (7%)

Query: 421 VQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGT 478
            +  LE K+ N  ++     I +  + + V     + I+  NP+   +   ++       
Sbjct: 125 AKAQLEIKHKNAALERYAVIIANSVDIICVVDERTKLIEELNPSIEKILGFKK------- 177

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLP 534
              ++           +  + F   +   D E K      +LL++       E  +    
Sbjct: 178 --EDVLERPIYSLVPKNRLEDFREELLKLDHE-KERTFEFQLLNNKGELVWTECRVT-FS 233

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +   +  N T   + E  L    E   +A  +K +F+ ++S+ELR+PL  IIG  +LL
Sbjct: 234 KKKYFFSISNHTLQKQYEEQLIHSKEDAIQARNVKETFLANMSHELRTPLNGIIGIANLL 293

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K ++   L   Q Q V+ +  SS  LL +VNDILDL+ +DAG   L+   + +  +L   
Sbjct: 294 KQTE---LEEAQKQMVKLLEVSSQSLLGVVNDILDLSKIDAGKFVLSKKEVNIYHILKSS 350

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
            + + TK +E  + + +  D +L  ++  D  RL QI   ++SNA+ F+ KG   + +  
Sbjct: 351 IELMRTKANEKLLDLNLEIDPRLPKYIETDPLRLNQILMNLISNAIKFTEKGYVSLRVNQ 410

Query: 713 ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINL 767
               GD+I   F VK+ G  I  +    +F  +            G GLGL IV+  + L
Sbjct: 411 LSHEGDYITVKFEVKDTGIGIQPERKAKIFESYEQADDDTSLKYGGTGLGLGIVKKLVEL 470

Query: 768 HGGHVSISSSDEGVTTINCRI 788
             G +  +S     +     +
Sbjct: 471 QNGKIDFNSEYGKGSNFWFEL 491


>gi|218780746|ref|YP_002432064.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218762130|gb|ACL04596.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 485

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 134/297 (45%), Gaps = 23/297 (7%)

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           SL+   + L+D+V     +               +  +    L    E  +     K+ F
Sbjct: 175 SLEKDCQKLADAVFSAQAVGKLTVHYKKLQEREEEQSQRVHRLRLALEHAK---RAKSDF 231

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  VS+ELR+PL  I+GF+ +L+    G LN+KQ QYV  I  S   LL+L+NDILDL+ 
Sbjct: 232 LSSVSHELRTPLNAILGFSQVLQEEYFGGLNTKQKQYVNDILESGKHLLDLINDILDLSR 291

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQI 690
           V++G MKL    ++++ +L      I  K  ++ I I V    ++   + +AD  +L QI
Sbjct: 292 VESGEMKLEVEPLLISFILESSLHLIREKAFKHGIEITVDVSDEIREMAILADHTKLKQI 351

Query: 691 FSKILSNAMDFSSKGSTVILKAAR---------------DNGDFIFSVKNNGSSIPEDMC 735
              +LSNA  F+     + + A                 + G     V+++G  I  D  
Sbjct: 352 LFNLLSNAAKFTPDKGAICVGARVIHDPVDGGGSQDLDDNPGWIEVFVRDSGIGIEGDDK 411

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           K VF+ F   +    G+  G GLGL + +  + LHGG + + S      +     +P
Sbjct: 412 KRVFDDFYQVSAGLSGKTPGTGLGLPLAKRLVELHGGRIWVESEGRHQGSCFVFTLP 468


>gi|309790318|ref|ZP_07684885.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227652|gb|EFO81313.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 987

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/383 (22%), Positives = 165/383 (43%), Gaps = 19/383 (4%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G        +  ++   + +     +   + I+   + + V     +I+  N A   +  
Sbjct: 339 GHLATTINQMLARLAHAQRRITENERRYRQLIELTPDAIIVHDGQ-QIRYINSAGHQVLG 397

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            E +          +  T +    ++DG  +          E++  +    ++   +L  
Sbjct: 398 NEVHVGQ------ALDPTLAAVVPQADGTPILK--------EQRITRADGSVIEAELLAL 443

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           + +      T L   N+T+    ER L E  EA   A+  K+ F+  +S+ELR+PLT+II
Sbjct: 444 AFVDEDTPATELIVRNITERKEVERTLREAKEAADSANRAKSQFLATMSHELRTPLTSII 503

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ +LL  +     N +    +  I  +   LL ++ND+LDL+ ++AG M+++ + + L+
Sbjct: 504 GYAELLNRALTPIANDEVMHDLRRIQVAGAHLLAIINDVLDLSKIEAGHMQVHPAPVRLD 563

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L+  V  ++   +  N  ++ V      G  V D   + QI   +LSNA  F++ G  +
Sbjct: 564 KLVQAVVDTVQPVIVRNTNQLLVQGLDDAGLMVTDEVHVRQILLNLLSNAGKFTTNG-QI 622

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            L+ +       F+V + G  I  +  K +F  FV       R   G GLGL++      
Sbjct: 623 TLRISGTPEMVYFAVHDTGIGIHPEQAKQLFRDFVQVDASTTRKYGGTGLGLALSRRLAR 682

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L GG +++ S+    +T    +P
Sbjct: 683 LLGGDITLESALGEGSTFTLSLP 705


>gi|123969074|ref|YP_001009932.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           AS9601]
 gi|123199184|gb|ABM70825.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           AS9601]
          Length = 688

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 157/390 (40%), Gaps = 47/390 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  + L++ E   L     +  I   
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKHFLNEIPEI 347

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            S   +     +         DD R SL     TL ++  SVL+ + I L          
Sbjct: 348 LSNDLH--SNIESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKIELKGIAV----- 400

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  +N F+ +VS+ELR+PL NI  + + L   K    +
Sbjct: 401 -TIQDLTREVEL----------NAAQNRFISNVSHELRTPLFNIKSYVETLHDLKDQLSD 449

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G + +    + +   + +  ++      
Sbjct: 450 EEQIEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLEQMDIKPAIEQTLRNYRLNAT 508

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           E N+ +    +  +   + +   LLQ+F  +L N + FS K ST+I++A           
Sbjct: 509 EKNVSLAHDIEETIPPILGNFDLLLQVFDNLLGNGLKFSPKNSTLIIRAYTWPDSCPAFP 568

Query: 718 ------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGL 758
                                  + + GS I +   + +F+RF    +     +G GLGL
Sbjct: 569 PSIKNDAAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSVHTEQGTGLGL 628

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           SIV   I  HGG + ++S     TT    +
Sbjct: 629 SIVRGIIEKHGGEIRMASELGVGTTFWFDL 658



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D    +   N +   L+  +  FL      +
Sbjct: 283 DEANIEELKAAQIKQQSLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKHFLN 342

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           E+ E L +        +  +  E+I +  K  +  + +   P  +TL +++ S       
Sbjct: 343 EIPEILSN--------DLHSNIESILNREKEKDDLRFSLGEP-ARTLRIVLQSVLDTNKI 393

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    N  +
Sbjct: 394 ELKGIAVTIQDLTREVELNAAQNRFI 419


>gi|116490222|ref|YP_809766.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus
           oeni PSU-1]
 gi|116090947|gb|ABJ56101.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus
           oeni PSU-1]
          Length = 633

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 159/399 (39%), Gaps = 33/399 (8%)

Query: 404 VTSNPRGGTIWM-FENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + S    G +     +L+  +  ET   N         + ++++GV     DG I + N 
Sbjct: 245 IKSKDEIGILATQINDLSDTIASETATSNMESDRLNSLLSNMTDGVLAITRDGTITVINQ 304

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A   L        + G +I ++     +       +      +   D             
Sbjct: 305 AALDLLHIPRTYKAVGKNISDLLKLVDKKITLRKLFQSIRGFVVEPDGP----------- 353

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            D V   ++  L   Q+            A   L +    L+  ++ KN FV +VS+ELR
Sbjct: 354 -DGVTLNAVASLVRRQSGFISG-------AVVVLRDVTRQLKLENDQKN-FVSNVSHELR 404

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT++  + + L+   L        +++      +  +++++ND+L+L+ +D G  K++
Sbjct: 405 TPLTSVNSYIETLQEGALTQ-KKIAREFLGVAHDETQRMIHMINDLLELSRMDQGRTKMD 463

Query: 642 YSTIVLNDLLNEVKQSIATKMHE-------NNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
              +     +N V         +       N+ +I    D K   +V  D  + +Q+   
Sbjct: 464 TEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDSDKFMQVVDN 523

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           +++NA+++S  G  + +     +   I S+K++G  IP+   ++VF RF        R  
Sbjct: 524 VINNAINYSPDGGNIEIGINETDDSIILSIKDHGLGIPKKDLENVFTRFYRVDKSRARKQ 583

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGL+I +  +    G + + S+    TT    +P 
Sbjct: 584 GGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 622



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 29/168 (17%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S+  T N +      +L N+T  +    ++  +   N++ ++L  I   + A   +  +
Sbjct: 266 ASETATSNMESDRLNSLLSNMTDGVLAITRDGTITVINQAALDLLHIPRTYKAVGKNISD 325

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH-----VIVTSNPR 409
           LL+           ++ K     +F   +      D    P+G TL+     V   S   
Sbjct: 326 LLKL----------VDKKITLRKLFQSIRGFVVEPDG---PDGVTLNAVASLVRRQSGFI 372

Query: 410 GGTIWMFENLTVQVDLE-----------TKYNTLVKVQGETIDHLSEG 446
            G + +  ++T Q+ LE            +  T +      I+ L EG
Sbjct: 373 SGAVVVLRDVTRQLKLENDQKNFVSNVSHELRTPLTSVNSYIETLQEG 420


>gi|90420832|ref|ZP_01228737.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334807|gb|EAS48579.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1]
          Length = 782

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 116/527 (22%), Positives = 210/527 (39%), Gaps = 50/527 (9%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           +        L      +  +D  R   + +RS  E+ ++           D +L F   A
Sbjct: 251 ETHQRVDTALSRGHCGLWDWDIARGRMYWSRSMYEILDL--------CPRDSVLAFGDIA 302

Query: 363 NKL-PEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLH------VIVTSNPRGGTIW 414
             + P+  + ++  ++       S +      H  +G  +       V  T+      I 
Sbjct: 303 PLMHPDDGSLFEVARQVAAGKITSLDRVFRMRHR-DGSYVWLRARAEVSRTAENEVHLIG 361

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  +++ Q +L  + +         I+++SE   +     R+ L N  +R  +   E  +
Sbjct: 362 VAVDVSEQQELARRTDEANTQLNNAIENISETFVLCDSQDRLVLCNSKYRETFGLTEADV 421

Query: 475 SPGTHIRNIAATCSRYYNE-------------------SDGWDLFAAIITSFDDERKSLQ 515
           + GT +  + A   +  +                     DG  L  +   + DD   S+ 
Sbjct: 422 ARGTPLATVMAKARKPIDSHAVTSPTFASGERASEALLPDGRWLLLSERRTADDGFVSIG 481

Query: 516 GTLELL---------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
             +  L         S+  L   I  L  A+               +    + E    A 
Sbjct: 482 TDVTQLKLHQARLSDSERRLMAVIDDLSIAR-RDAERKAVQLTEMNQNYAAEKERAETAS 540

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVN 625
             K +F+ ++S+ELR+PL  I+GF+++++    G +   K  +Y E I  S   LL L+N
Sbjct: 541 SAKTTFLANMSHELRTPLNAILGFSEIMRQGTFGPIGCPKYGEYAEDIHQSGHYLLKLIN 600

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILD+A ++AG + LN+ T+ L+++  E  + I  +  +  I +      ++     DR+
Sbjct: 601 DILDMAKIEAGRLVLNHETVDLSEIATETGKIIEVQADQKAICLDADVPERM-ELTVDRR 659

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
              QI   +LSNA+ F+  G TV +K        + ++ +NG  IP    KS+   F   
Sbjct: 660 ATKQIVLNLLSNAVKFTDNGGTVKMKLRTVGDAALITIADNGMGIPRAALKSLGKPFEQI 719

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            N      +G GLGL+I  S + L GG + ISS     T +  R+P 
Sbjct: 720 ENELTRTNKGTGLGLAIARSLVALQGGRMRISSQVGEGTIVAIRLPL 766


>gi|257060052|ref|YP_003137940.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590218|gb|ACV01105.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 845

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 10/253 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N     +    L E  +A   A+  K+ F+ ++S+E+R+PL  IIGF+DLL+T      +
Sbjct: 338 NQKALAQQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTLVR---D 394

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K   Y+  I +S   LL L+NDILDL+ ++A  ++L    + L  L+ E+KQ  + +  
Sbjct: 395 YKSRSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQAS 454

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718
           + NI +       +   +  D  RL QI   ++ NA+ F+ KG   + +     + +   
Sbjct: 455 QKNIELITDVSSDIPLLIEFDEIRLRQILFNLVGNALKFTQKGYIKITVNCDYLDLNKIT 514

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V++ G  IP D    +F  F            G GLGL+I +    + GG +S+ S
Sbjct: 515 IRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTISLHS 574

Query: 777 SDEGVTTINCRIP 789
             E  +T     P
Sbjct: 575 ESEKGSTFLMIFP 587


>gi|119947312|ref|YP_944992.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119865916|gb|ABM05393.1| sensor histidine kinase with ATPase domain [Psychromonas ingrahamii
           37]
          Length = 1278

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 167/377 (44%), Gaps = 28/377 (7%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +++ E ++ ++ G+A+      + ++    + +   EE++L        + A    
Sbjct: 444 RKYSQIELEFLESVASGIAIT-----LHVTRTRQQLVDMLEESKLQS----EELQAQQEE 494

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
               ++  +  + ++   ++  ++    L+ ++  + E S       QT       T   
Sbjct: 495 LRASNEELEEQSTMLVKSEESLRNKSEELQQINSELEERSEE--LERQTAEMTEKNTVIE 552

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA++A+  +   L KA   K+ F+ ++S+ELR+PL +++  +  L  +  G+LN +Q + 
Sbjct: 553 RAKQAVEIQANNLEKASRYKSEFLANMSHELRTPLNSLLILSQSLAKNSQGNLNEEQQED 612

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I      LL L+NDILDL+ V+AG + +++    +N+LL  + +      ++  + +
Sbjct: 613 ARVIYEGGQSLLALINDILDLSKVEAGKLDIHFEQFSINNLLVNLGRQFKPVANKKGVEL 672

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------- 720
               +  L   F +D QR+ Q+   +LSN + F+  G TV LK  +              
Sbjct: 673 CFDKEDVLSDDFFSDPQRIEQVLRNLLSNGIKFTHHG-TVSLKVIQPGPSVRFDNPALRG 731

Query: 721 -----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                F+V + G  I  D  +SVF  F        R   G GLGL+I    + L GG + 
Sbjct: 732 RNTLGFAVSDTGIGISADNQESVFEAFQQGDGSTSRNYGGTGLGLTISRELVKLMGGEIQ 791

Query: 774 ISSSDEGVTTINCRIPS 790
           + S +   +T    +P 
Sbjct: 792 LQSKEGEGSTFTLYLPL 808


>gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1609

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 7/246 (2%)

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              + E+   + NE LR+ D +K+ F+ + S+ELR+PL  IIG ++ L           Q 
Sbjct: 905  RQKTEQE-QKVNEQLRRVDALKDQFLANTSHELRTPLQGIIGLSESLIERVQ---ERDQQ 960

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + +  I +SS  L +LVNDILD + +    ++L    + L  L + V +++A  +     
Sbjct: 961  EDLSMIISSSRRLNSLVNDILDFSKLKNQEIELATKPVNLYALTDVVLRNLAPLVQGKKF 1020

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNN 726
             I       L +  AD  RL QI   ++ NA+ F+  G  V+        D +  SVK+ 
Sbjct: 1021 SIINAVPNDLPAAWADENRLQQILYNLVGNAIKFTETGQIVVNALREKTSDVLTISVKDT 1080

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP D  + +F  F        R   G GLGLS+ +  + LHGG + + S     +T 
Sbjct: 1081 GIGIPADKQEVIFKEFEQGDGSIARSFAGTGLGLSVSKRLVELHGGKMWLESVVGSGSTF 1140

Query: 785  NCRIPS 790
               +P 
Sbjct: 1141 FFTLPL 1146


>gi|313147366|ref|ZP_07809559.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136133|gb|EFR53493.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 955

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 112/647 (17%), Positives = 255/647 (39%), Gaps = 74/647 (11%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWANISYKKNTETEGIVFQKAIGE 239
                +L     + + + +S+   +  +D       ++ N   +++    G    + +  
Sbjct: 186 RKNNTELQRRKLLQENILNSIPLPIHIKDVEDDFRYVFCN---EESMRMFGTYEGETVS- 241

Query: 240 SRKLFKEEIKKRMISSS----ALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAI 293
              +   E  +RM  +        K +      +   + +SY   + + +   G   + +
Sbjct: 242 --DILDREQAERMQKTDLEVFTTGKPYFGVERIILK-DGRSYDTIVRKNIIYDGSKRLLL 298

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           ++  +  + + L    ++L +++           ++  N ++   +E     ++     D
Sbjct: 299 NIRWDQKLQNDLERRAKVL-SIS-----------MEVMN-AYTWFYEPSKQRVSFGEGFD 345

Query: 354 ELLEFLRSANKLP------EQLNWKTWKENIFSVYKSSETHKDTWHLPN----G-----Q 398
           ++       N            + + +   + +V K      D  +  +    G     Q
Sbjct: 346 KIGRNALDINTFEKFAECVHPDDRRQFIGTMDAVLKQDSGEWDIEYRADLRGNGNYEWWQ 405

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDL-----------ETKYNTLVKVQGETIDHLSEGV 447
           T  V+ TS            +T+ ++            + K   L++     +++ + G+
Sbjct: 406 TRGVLETSILNDTPYQYVSGMTISIESYKQTELTLLKNKEKLKRLIRQNELVLNNTNSGL 465

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           A    D  ++  N +  S   + E         ++     +          +   ++ S 
Sbjct: 466 AYITKDYVVQWENVSVCSSSLSFEAYKRGECCYKS-----AHNRTSPCENCVLGKVLASR 520

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEAL 562
             E+          ++ ++E    P+          ++   ++TD  R    L +     
Sbjct: 521 QMEKIKFHSE----NNRIVEVLATPVFGEGEEIDGIVIRVDDITDRERMIEELRQAKLLA 576

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            ++D++K++F+ ++S+E+R+PL  I+GF+DLL  S+     + + +Y++ I+ ++ +LL 
Sbjct: 577 EQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQ---ADREEYMQIINTNNELLLK 633

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILDL+ +++G ++L Y    L +  N +  S+  +M    +R+  I+   +     
Sbjct: 634 LINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMKQRMVNPEVRLVTINPYDVCLVKL 693

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR R+ Q+ +  ++NA+ ++ KGS + +     +      VK+ G  IPE+    VF+RF
Sbjct: 694 DRNRVAQVMTNYVTNAIKYTPKGS-IEMGYEVMDTGIRLYVKDTGIGIPEEKKNKVFHRF 752

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  Q  G GLGLSI ++     GG V   S     +     IP
Sbjct: 753 EKLDEFAQ--GTGLGLSICKAITESMGGSVGFESKYHEGSLFWAIIP 797


>gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
 gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
          Length = 1170

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            +  +      T  ++++  L+ T E L++     +       Q             A+ 
Sbjct: 423 EEQSNALRESQTHMEEQQAELEQTNEQLAEQTEALA------RQRDQMDEKNQRLNEAQL 476

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ + L++A   K+ F+ ++S+ELR+PL + +    LL  +  G+L+  Q Q+   I
Sbjct: 477 MLEQRADELQRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPDGNLSDDQVQFARSI 536

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672
            ++   LL L+NDILD++ V+AG ++++    +L+ L++ +K     +  E  +   V  
Sbjct: 537 YSAGNDLLTLINDILDISKVEAGKLEVHPELTILSRLVDGMKNLFLPQAMEKALSFSVEL 596

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D    +   DRQRL QI   +L+NA  F+ KGS  +    RD G   F+V++ G  I  
Sbjct: 597 ADDLPPTLFTDRQRLEQILKNLLANAFKFTEKGSVTLRVEPRDGGMLAFAVRDTGIGIAP 656

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   ++F  F        RR  G GLGLSI     NL GG + + S+    +T    +P
Sbjct: 657 EQQAAIFEAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLP 715


>gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 734

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 124/261 (47%), Gaps = 10/261 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++T        + E+ L E      +A  +K+SF+ ++S+E+R+P+  I+G T++L   
Sbjct: 202 YVMTEFEGRQRRQLEKQLVEARNEALQASHMKSSFLANMSHEIRTPMNGILGMTEVLLDQ 261

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +  S   + ++ I  S+  LL+L+N ILDL+ +++G ++L  S      L+ EV  +
Sbjct: 262 ---NPESGIKKKIQIIRESALNLLSLINGILDLSKIESGKLELEESYFEPRKLVQEVINT 318

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KA 712
           +        + +   +S+    +F  D  RL QI   +L NA+ FSS+G+  ++    ++
Sbjct: 319 VEYSAKSKGLDLHASVSEQTPAAFSGDVLRLRQILINLLGNAIKFSSEGTVSLIVNSFRS 378

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
            +        VK+ G  + E   K +F+ F        R   G GLGLSI +  + L  G
Sbjct: 379 DQSRTMLQIQVKDQGLGMDEATLKKIFSPFEQADKSTTRKFGGTGLGLSITKQLVELMNG 438

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + S     +     +P +
Sbjct: 439 KIEVESKPNEGSIFWVTLPLE 459


>gi|253988310|ref|YP_003039666.1| signal transduction histidine-protein kinase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779760|emb|CAQ82921.1| signal transduction histidine-protein kinase [Photorhabdus
           asymbiotica]
          Length = 776

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK  F+ ++S+ELR+PL  +IGFT   + +   SL  +Q++Y+  I
Sbjct: 277 ELAIAKKRAQEAARIKTEFLANMSHELRTPLNGVIGFT---RQTLKTSLTIQQTEYLHII 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++NDILD + ++A  + L     +L + ++EV   +       NI++    
Sbjct: 334 ERSANHLLNIINDILDFSRLEADKLILENIPFLLQETIDEVIVLLTPSAKNKNIQLTHSI 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
           D ++ +  + D  RL QI + ++ NA+ F+ +GS  + +   +          +V + G 
Sbjct: 394 DPQIPNLVIGDPMRLQQILTNLIGNAIKFTEQGSVKIDINLVQQQHHKINLAMTVSDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +    +F  F         +  G GLGL I +  I   GG++S +S     +  + 
Sbjct: 454 GISPEQQPHLFQAFHQADASISRRYGGTGLGLVITQKLIREMGGNISFTSEQGKGSVFHF 513

Query: 787 RI 788
            +
Sbjct: 514 DL 515


>gi|254294996|ref|YP_003061019.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
 gi|254043527|gb|ACT60322.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
          Length = 1008

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 13/250 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R      +  +    +++IK+ F+  +S+E+R+P+  ++G  +L+ ++K    + K  
Sbjct: 296 MRRVLHDQVKARKLALSSNQIKSDFLATMSHEIRTPMNGVLGMAELILSAK---PSKKIE 352

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y E I +S   L  +++DILD + ++AG M+L      + +L++E  Q  A +  +  +
Sbjct: 353 SYAETILSSGNSLQRIIDDILDFSKIEAGRMELERVDCNVVELIDETGQLFAMRAQDKGV 412

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VIL------KAARDNGDF 719
            I + SD  + S    D  R  Q+    +SNA+ F++ GS  V +          D   F
Sbjct: 413 EISIFSDPDMPSNVFLDPVRFRQVLDNFVSNAIKFTNTGSIQVKVFEIPDESLDEDGIRF 472

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I E+    +F +F        R   G GLGLSI +S I L  G + + S 
Sbjct: 473 RVEVVDTGIGISEEAQSRIFEKFSQADTSTTRKFGGTGLGLSICQSIIELANGKIGVDSV 532

Query: 778 DEGVTTINCR 787
           +   +T    
Sbjct: 533 EGEGSTFWFE 542


>gi|108756960|ref|YP_634851.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
 gi|108460840|gb|ABF86025.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
          Length = 671

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 199/515 (38%), Gaps = 50/515 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +E            +  +L   +     +    + NR+  +   I         S +  
Sbjct: 170 EREALERQSELRHLRLTESLPEVMWAARSDGSFTYANRAARDYTGIQAE---QPLSLNTF 226

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRG--- 410
           LEF+         ++ +  +       +  +  +  + L   +G     +  + P     
Sbjct: 227 LEFVH-------PVDREAMRAAWVQAIRMGQRVEREFRLRRFDGVYRWHLARAVPERDEN 279

Query: 411 ----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRS 465
               G I +  ++  +   E      +     T+D   + V +F PD   +  +N     
Sbjct: 280 GLLAGWIAVATDIDDKRRAEE----ALGRFKATLDATLDCVLMFSPDSLTLTYANAGAAK 335

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII------TSFDDERKSLQGTLE 519
              +  + L  G  +  +       ++E+    L A ++       ++    +   G+ E
Sbjct: 336 QLASSTDELV-GLSVLEVEGA----FDEAGFRKLLAPLVSGTLPSQTYSTSHRRRDGS-E 389

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +  + VL+Y        + +    ++T+  RAE AL           E K+SF+   S+E
Sbjct: 390 VPVEVVLQYVAADGGPGRFISVARDITERQRAETALRLA-------SEAKDSFLAAASHE 442

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL    G   L      G   +   + ++ I+     +  LV D+LD++ + AG + 
Sbjct: 443 LRTPLAAAKGHAHLALLKLGGETEAGPGKSLKIINRQIDRMAKLVEDLLDISRLQAGRLS 502

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L      L+ L++E +  +A         I V +  +L     DR RL Q+ + +LSNA+
Sbjct: 503 LELERFDLSHLVHETRDRMAVLSQ--GHEIHVEASDQLEGTW-DRGRLDQVLTNLLSNAL 559

Query: 700 DFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            +S +G  V ++   ++ +    SV + G  IP++    +F RF       +  G+GLGL
Sbjct: 560 RYSPEGGPVWVRVQGEHDEGVHLSVTDTGVGIPKEKQGLIFERFGRAHGS-KYGGLGLGL 618

Query: 759 SIVESFINLHGGHVSISSSD--EGVTTINCRIPSK 791
           +I +  +  HGG + + S       +T +  +P +
Sbjct: 619 TISQGIVEQHGGRIWVESPGVAGEGSTFHVWLPRE 653



 Score = 68.4 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 84/286 (29%), Gaps = 19/286 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFK--VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           I  +      + ++     S  +   L +SL  ++W     G   +AN + +  T  +  
Sbjct: 159 IQRQAVLLRQREREALERQSELRHLRLTESLPEVMWAARSDGSFTYANRAARDYTGIQAE 218

Query: 232 VFQKAIGESRKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
               ++    +      ++ M ++        ++   E       G  + +    V    
Sbjct: 219 QPL-SLNTFLEFVHPVDREAMRAAWVQAIRMGQRVEREFRLRRFDGVYRWHLARAVPERD 277

Query: 287 ------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR-YLQFHNRSFVELW 339
                 G   +A D+  +    + L      L      + +F  +   L + N    +  
Sbjct: 278 ENGLLAGWIAVATDIDDKRRAEEALGRFKATLDATLDCVLMFSPDSLTLTYANAGAAKQL 337

Query: 340 EIDLAFLATNPSNDELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
                 L      +    F  +   KL   L   T        Y +S   +D   +P   
Sbjct: 338 ASSTDELVGLSVLEVEGAFDEAGFRKLLAPLVSGTLPSQ---TYSTSHRRRDGSEVPVEV 394

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
            L  +      G  I +  ++T +   ET      + +   +   S
Sbjct: 395 VLQYVAADGGPGRFISVARDITERQRAETALRLASEAKDSFLAAAS 440


>gi|303241735|ref|ZP_07328232.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302590736|gb|EFL60487.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 503

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 127/249 (51%), Gaps = 5/249 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +   +      AL   +E++  F+ +VS+ELR+P+T+I GF + +    +     ++
Sbjct: 251 EIGQLAESFNHMAVALENLEEMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPP--ERE 308

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+  +S  +  L  L ND+LDLA +++G MKL + T  +N+L+      +  ++   N
Sbjct: 309 REYLSIVSDETKRLSRLTNDLLDLARMESGEMKLTFVTFDINELIRRCIIKLENQIVTKN 368

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+I+     +     AD+  + ++   +L NA+ F   G  +I++     G  + SVK+N
Sbjct: 369 IQIEANFHEEAAHVYADKDSIERVVLNLLHNAVKFVQDGGQIIIETEMSKGKVMVSVKDN 428

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G+ I  +    +++RF  +       + G GLGL+IV++ IN HG  + + S     T  
Sbjct: 429 GAGIDSEEIGLIWDRFYKSDKSRGKDKSGTGLGLAIVKNIINEHGQEIRVESEIGKGTVF 488

Query: 785 NCRI-PSKE 792
              + P+KE
Sbjct: 489 YFTLNPAKE 497


>gi|219853029|ref|YP_002467461.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219547288|gb|ACL17738.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 575

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/534 (19%), Positives = 199/534 (37%), Gaps = 30/534 (5%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
              ++ ++        +A    +  T+ DQ     ++     V     D    +Q  N +
Sbjct: 48  HELQVHQIELEMQNEELAQTREEAETLRDQ---YIDLYDFAPVGYVTLDPAGIIQEVNLT 104

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPE----QLNWKTWKENIFSVYKSSETHKD 390
              L  ++   L           FL   ++LP     +   +T       +         
Sbjct: 105 GSLLLSMNRGALIG----ARFGAFLHLDSRLPFTAFCERVRRTGITETCDLKMQGPAGDR 160

Query: 391 TWHL-PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
            W+   +G+        N  G     F ++T                    + + +GV  
Sbjct: 161 VWYAHLDGRVKQ--AGPNSDGRIRLAFSDVTENRRANEAAAESELRFRRLFETMLQGVVY 218

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI-ITSFD 508
              DGRI   NPA   +           T       T      +  G +  A + + + +
Sbjct: 219 QNADGRIISMNPAAERILGKSPAEFINQTSEDTEHHTIREDGTKFLGLEHPAMVALRTGE 278

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLP--------NAQTMLTFVNVTDSVRAERALTEKNE 560
           D +  + G            SI  +P          Q    F ++T+  +AE  L E  E
Sbjct: 279 DIKDVVMGVFNPREQGYRWISIDAVPLFHPSEKRPYQVYTIFDDITERRKAEEVLREYGE 338

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            ++ ++E    F    S++L+ PL NI+ F+ LL     G L++   +Y+ +I      +
Sbjct: 339 KVQASNEELQQFAYVTSHDLQEPLRNIVSFSQLLNRRYQGRLDADADEYLGFIIEGGQRM 398

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             L+ D+L  + V      L    + ++ ++ +V + +  ++ E N  + +   G L + 
Sbjct: 399 QLLIKDLLQFSQVQTTARPL--EQVDMHGVVADVLRMMERQIREANATVTM---GDLPAI 453

Query: 681 VADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +AD  +L Q+F+ ++ NA+ +        + + A R    + F+V +NG  I  +    +
Sbjct: 454 MADASQLEQVFTNLIGNALKYRRHDLPPAIQISAERMRKCWRFAVADNGIGIAPEFFDRI 513

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F  F       +  G G+GL+IV+  +  HGG VS++S     +T    +P+ E
Sbjct: 514 FVVFQRLHTIEEFEGTGIGLAIVKKIVERHGGRVSVTSVPGEGSTFFFTLPAVE 567



 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 75/213 (35%), Gaps = 14/213 (6%)

Query: 41  IILLIRQRNSLAKKVNETYSFLSEICDQL----SKYHSLLTENNCLTIVWDGKDETPEII 96
            I L+ +      ++      L++  ++      +Y  L        +  D      E+ 
Sbjct: 43  AIALVHELQVHQIELEMQNEELAQTREEAETLRDQYIDLYDFAPVGYVTLDPAGIIQEVN 102

Query: 97  GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG--QSFDLVAETQND---C 151
                 + + +       F  +L     +  +   E++R+ G  ++ DL  +        
Sbjct: 103 LTGSLLLSMNRGALIGARFGAFLHLDSRLPFTAFCERVRRTGITETCDLKMQGPAGDRVW 162

Query: 152 AIKIEGRV--SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
              ++GRV  +G  +  RI      +S++ E     +  +     F+ LF+++   V ++
Sbjct: 163 YAHLDGRVKQAGPNSDGRIR---LAFSDVTENRRANEAAAESELRFRRLFETMLQGVVYQ 219

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           +  G I+  N + ++        F     E  +
Sbjct: 220 NADGRIISMNPAAERILGKSPAEFINQTSEDTE 252


>gi|53722385|ref|YP_111370.1| two-component sensor kinase protein [Burkholderia pseudomallei
           K96243]
 gi|52212799|emb|CAH38831.1| putative two-component sensor kinase protein [Burkholderia
           pseudomallei K96243]
          Length = 737

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/509 (17%), Positives = 195/509 (38%), Gaps = 31/509 (6%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 231 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 290

Query: 353 DEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--- 408
             L      +   +         +    S+          +   +G  L V   + P   
Sbjct: 291 RVLTFRHAATQRVIDNPARVAVERRRTASL-----PAHTRFVGRSGGELPVDGNAAPTFD 345

Query: 409 ----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G + +  +++ +           +     ++     + + G DGRI L N    
Sbjct: 346 ANGKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAE 398

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+      +  G  I  +     R  + +     F         E + L G     S+ 
Sbjct: 399 KLFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 457

Query: 525 VLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+
Sbjct: 458 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 517

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++  
Sbjct: 518 EPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDA 575

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F
Sbjct: 576 RRPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKF 632

Query: 702 SSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL+
Sbjct: 633 RGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLA 692

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +  +  HGG + + S     TT +  +
Sbjct: 693 LCKRIVEHHGGRIFVESEPGQGTTFSFTL 721


>gi|255533423|ref|YP_003093795.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346407|gb|ACU05733.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 656

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/511 (20%), Positives = 199/511 (38%), Gaps = 38/511 (7%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA------FLATNPSNDEL 355
           + +L    +IL    +     D      F NR +  +  + +       +++    +D +
Sbjct: 8   DKKLAEIQKILEISPMGAFQADTVGNCLFLNRQWENISGLSVEESLGKGWMSIVYEDDIV 67

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L      + + E       KE    VY+     +    L                  I  
Sbjct: 68  LINNLLKDVMAEG------KEIFDFVYRIHHPSEGLRQLKVNAKFIFDDYGV-ISYYIGF 120

Query: 416 FENLTVQVDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            E++T +   E  +  +   ++     +D +S+ ++  G      L+   F +    E N
Sbjct: 121 LEDITDRTQSELAFQEIKQNLERSNLILD-VSQELSTTGGWEFNLLTGEVFWTKQVYEIN 179

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS----DSVLEY 528
            +   T +       SRY  E     +    +    +++      L L +       +  
Sbjct: 180 GVDEQTFVPTFEGVLSRY--EEGYAQIMEQQVKEAIEKQIPYDLELRLCTPAGVRKWVRA 237

Query: 529 SIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              P+     ++       ++T     E  L    +    + + K  F+  +S+E+R+PL
Sbjct: 238 VGTPIVADNKVVVLRGAITDITQKKEIELELLRAKDIAEHSAKAKTDFLSVMSHEIRTPL 297

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG  +LLK          Q +YV  +  S+  LL L+NDILDL  +++  ++L  + 
Sbjct: 298 NGIIGIANLLKLKH----TMDQEEYVRSLIFSADHLLQLINDILDLTKIESDKLELVLAE 353

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
           + + +L+  +K    +      I +K   D  +    +AD  RL QI + ++SNA+ F+ 
Sbjct: 354 VNIFELVRNIKNQFKSLAEAKGIVVKSFIDDDIPQRLIADPVRLGQILNNLISNAIKFTE 413

Query: 704 KGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
            G+  I    +    +  +  FSVK+ G  IPE++ +++F  F  V      +  G GLG
Sbjct: 414 SGAVTITLSLVALTANKANVHFSVKDTGMGIPEELHETIFESFKQVQQDVHRKHTGTGLG 473

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  + LH G + + S+    T     +
Sbjct: 474 LAITQKLVELHDGRILLKSTAGQGTEFYFEL 504


>gi|229819354|ref|YP_002880880.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia
           cavernae DSM 12333]
 gi|229565267|gb|ACQ79118.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia
           cavernae DSM 12333]
          Length = 698

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 149/367 (40%), Gaps = 15/367 (4%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNIA 484
             +   + + +   +  + +G+     DGR+   NPA  R+L       +    H    A
Sbjct: 324 TAELRAVTRSRELMLSSVGDGIYGVDRDGRVTFVNPAGARTLGFAAREMVGQDAHGLFHA 383

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                     D   +  AI        +          D  +E +  PL +   +L  V 
Sbjct: 384 PGPDGAPFPFDSCYIAEAIRDGITASAEEDLYRRADGKDVPVEVTASPLRDGAVVLGAVV 443

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           V   V   R            D +KN FV  +S+ELR+PLT+I G   LL     G ++ 
Sbjct: 444 VFRDVTQRRE----------VDRLKNEFVSVISHELRTPLTSIRGSLGLLAGGAAGPISD 493

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +  + V     SS  L  L+NDIL++  ++AG   +  +   +  +L      +      
Sbjct: 494 QARRMVTIALGSSERLTRLINDILEVERMEAGAAPIELADHDVRTVLAAAVDQVQGLADA 553

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           + + +++      G   AD  R++Q    +L NA+ FS++GS V++ A        F V 
Sbjct: 554 DGVSVRL--GDVTGRVHADADRVVQTLINLLGNAIKFSARGSQVVVAARPAGEFVEFRVV 611

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  IP D  + +F RF         ++ G GLGL+I  S +  HGG +   S+    +
Sbjct: 612 DHGRGIPPDRLEMIFGRFEQVDSSDAREKGGTGLGLAISRSIVERHGGRIWAQSTPGEGS 671

Query: 783 TINCRIP 789
           T    +P
Sbjct: 672 TFFMTLP 678



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 9/146 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++   +         +L ++   I   D++  + F N +           +    ++   
Sbjct: 322 ARTAELRAVTRSRELMLSSVGDGIYGVDRDGRVTFVNPAGARTLGFAAREMVGQDAHGLF 381

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP------R 409
                  +  P   +     E I     +S   +D +   +G+ + V VT++P       
Sbjct: 382 --HAPGPDGAPFPFDSCYIAEAIRDGITAS-AEEDLYRRADGKDVPVEVTASPLRDGAVV 438

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKV 435
            G + +F ++T + +++   N  V V
Sbjct: 439 LGAVVVFRDVTQRREVDRLKNEFVSV 464


>gi|170078014|ref|YP_001734652.1| signal transduction histidine kinase [Synechococcus sp. PCC 7002]
 gi|169885683|gb|ACA99396.1| signal transduction histidine kinase [Synechococcus sp. PCC 7002]
          Length = 672

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 166/402 (41%), Gaps = 27/402 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  ++   E +    +  +   ++ L    ++G  +   D +I L+NP  R
Sbjct: 247 GELIVNFNEMAERLASYEEQNIEELTSEKAKLETLVTTIADGAILLDTDLKIILANPTAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQG------- 516
            ++  +E  +   T + ++ A+ +               + S F  E  ++QG       
Sbjct: 307 KIFHWDEKSIIGTTVLHHLPASVTTQITRPLHQIAAGENLDSDFLIEHHAVQGNAEEIIR 366

Query: 517 ------TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                 TLE + D+V E + I +   + +          R      +      + ++ K+
Sbjct: 367 GNEFKITLEDMVDNVAEATTIRILLTEVLDKSKINV---RGIAITVQDITKEAELNKAKS 423

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL NI  F + L          ++  ++E  +  +  L  LVND+LDL
Sbjct: 424 QFISNVSHELRTPLFNIKSFIETLHEYGDDLTEQQRQDFLETANNETDRLTRLVNDVLDL 483

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +++  +      + ++  + +  ++      +  I +       L   +     LLQ+
Sbjct: 484 SRLESSRV-YRLDEVDISQPIEQTLRTHQLNARDKEITLTHELATDLPMILGHYDLLLQV 542

Query: 691 FSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            + ++ NA+ F+  G  V ++A     D       + + G  I  +  +++F+RF    +
Sbjct: 543 LTNLVGNALKFTQAGGCVSVRAYPVPHDPERVRIEISDTGIGIDPEDQEAIFDRFFRVEN 602

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           R     G GLGLSIV++ I+ H   + + S     TT    +
Sbjct: 603 RVHTLEGTGLGLSIVKNIIDKHNSRIHLISEVGIGTTFWFEL 644


>gi|66045353|ref|YP_235194.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63256060|gb|AAY37156.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1206

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 171/390 (43%), Gaps = 21/390 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E       +     ++     + V   +G +++ N ++  ++  +  
Sbjct: 558 AWMRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQRE 617

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  +L     + + I+P
Sbjct: 618 DIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQL----TIYHWILP 673

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  ++++++  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 674 FRDSLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 733

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 734 IGMLELALKRADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERAN 790

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 791 LRRLVEAVLRVFDGLARQKDLELVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMG 850

Query: 706 STVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
              ++  A ++ D        +V+++G  I  +  + +F  F    + GQ  R G GLGL
Sbjct: 851 RIKVVLLAAESPDPQLLHLHITVQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGL 910

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  S   + GG++S+ S+    T I+  +
Sbjct: 911 VICRSLCMMMGGNLSLDSTPGHGTRISMNL 940



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L +     + L +     ++ RD+ G +   N SY +         
Sbjct: 560 MRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLR---VFSAQR 616

Query: 234 QKAIGESRK--LFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKS---YKIVRVLN 284
           +  IG+S    +     + R  ++         T   L+     G+ +    + I+   +
Sbjct: 617 EDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQLTIYHWILPFRD 676

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   + + L    E     + A + F
Sbjct: 677 SLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTF 718



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 88/274 (32%), Gaps = 36/274 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  + DQ      ++      I + D+   L+  N S++ ++      +    + + +
Sbjct: 569 AAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGV 628

Query: 356 LEFLRSANKLPEQLNWKTWKENIF---SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           L     A +                     +  +     +H      L    +     G 
Sbjct: 629 LGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQLTIYHW----ILPFRDSLGEVQGI 684

Query: 413 IWMFENLTVQVDL-------ETKYNTLVKVQGETIDHLSEGV-----AVFG--------- 451
           I  + +++ +  L       + + +   + +   +  +S  +     AV G         
Sbjct: 685 IGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRA 744

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSF 507
             G +  S  A    + +  + L     I +IA   S   +     ++   L  A++  F
Sbjct: 745 DHGELDRS--AIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVEAVLRVF 802

Query: 508 DD--ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           D    +K L+  LEL S    +  I PL   Q +
Sbjct: 803 DGLARQKDLELVLELDSRINADVLIDPLRFKQIL 836


>gi|298245291|ref|ZP_06969097.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297552772|gb|EFH86637.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 852

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 121/714 (16%), Positives = 238/714 (33%), Gaps = 63/714 (8%)

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ--SFDLVAETQNDCAIKIEGRVS 160
           I  P  +T   SF          +L  A  +    G+   F+     +    +  E  ++
Sbjct: 174 IGKPLAETPWWSF----APASQSRLRAAIARA-STGETVRFEAQLCPREGMLLSFESVIT 228

Query: 161 ---GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
               +   +  L + GI           K+    I     L D++  LVW     G +  
Sbjct: 229 PHLDADHQIEYLVIAGIDI------TARKRAERDI---HALIDAIPQLVWTGRPDGYVDS 279

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI-----SSSALEKNFC--ETVSTLE 270
            N  +   T   G+   +A G+          ++ +     S+    + +   + +    
Sbjct: 280 YNQRWLDYT---GLTTAQAQGDGWMQCTHPADRQRVLETWQSAVQTGRPYETEQRLLQST 336

Query: 271 HGNNKSYKIVRVLNSFGEAGI------AIDVSKEITVNDQLTHTYE----ILHNLTVAIA 320
            G  + + +  V     +  I        D+ ++     QL  + E    +   +   + 
Sbjct: 337 TGEYRWFLMQAVPFKDAQGTILKYVSTCTDIDEQKRAQQQLKTSEENWRVLAETVPQLVW 396

Query: 321 IFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
               +  +++ ++ +           L    S     +  +    +            I 
Sbjct: 397 TTLPDGLVEYWSQRWYAYTGSSFEHALGHEWSQFLHPDEYQHTLTVWHHALETGKPYEIE 456

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
              K  +T +  W L  G  +        +        ++     +E             
Sbjct: 457 YRLKEGQTGEYRWFLARGMPVRDEAGQIVK--WFGTCTDIDEHKRMEEALRESQARASVL 514

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++    G+ V     +I  +N  F  +       L     +  +  T   Y   +     
Sbjct: 515 MNSNIIGIFV-DEGEQIVDANDTFLRMTGYTREDLRERC-MNWVHMTPPEYQARTQQAHQ 572

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             A   S     K           S L   +  +      L  +       A + L    
Sbjct: 573 ELAAQQSMTPYEKEYM----CKDGSRLPVLVCGVVLQHHPLQMIAFVLDNSARKEL---- 624

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                 ++ K+ F+   S+ELR+PLT +     L++        +  +  +  +      
Sbjct: 625 ------EQRKDGFISMASHELRNPLTALKMQAQLVRKRLEKQGLNGAAAALSGVEGPVKQ 678

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I   V+      S
Sbjct: 679 LERLIGELLDVSKIQAGRLEYRQETVDLDALLHEVADTMQQIHTTHTI---VVRGAAPCS 735

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            V D+ RL Q+F  +LSNA+ +S    TV +  +         V+++G  IP +    VF
Sbjct: 736 LVGDKDRLGQVFINLLSNAIKYSPAAETVEIDLSTSRETVTVRVRDHGFGIPREQRDKVF 795

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RF   A   Q+   G+G+GL IVE  +  HGG +++ S     +T    +P K
Sbjct: 796 ERFYRAAGPKQKAIPGLGMGLYIVEEIVKRHGGTITVDSEVGKGSTFTVTLPRK 849



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/418 (12%), Positives = 115/418 (27%), Gaps = 67/418 (16%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           ++      +           + ++L   ++  + A  I + N    +     G   ++ +
Sbjct: 1   MSRIKRTERLTPASSETLLHMLETLPDALFLVNDAETIRYVNT---RAQTMIGASREQLL 57

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG---NNKSYKIVRVLNSFGEAGIAID 294
           G        ++    +  +  +    +  + +E+                  G      +
Sbjct: 58  GNPFWRGAPQLVSPSLYQAVRKTRQTQEPTEVEYWSPMTRNWLHAQLTPTVGGLTLQFHE 117

Query: 295 VSKEITVNDQLTHTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +S      +       +    L  L   I I      +   N                 P
Sbjct: 118 MSAPTPCQETFPQGERLCIDDLDGLHTRIGILTPEGIVLDIN---------------EVP 162

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
            +D  +       K   +  W ++     S  +++     T     G+T+       PR 
Sbjct: 163 LDDAQVRREEVIGKPLAETPWWSFAPASQSRLRAAIARAST-----GETVRFEAQLCPRE 217

Query: 411 GTIWMFE---------------------NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           G +  FE                     ++T +   E   + L       ID + + V  
Sbjct: 218 GMLLSFESVITPHLDADHQIEYLVIAGIDITARKRAERDIHAL-------IDAIPQLVWT 270

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
             PDG +   N  +         +      ++       +   E+  W         ++ 
Sbjct: 271 GRPDGYVDSYNQRWLDYTGLTTAQAQGDGWMQCTHPADRQRVLET--WQSAVQTGRPYET 328

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEAL 562
           E++ LQ T             +P  +AQ      + T  ++ +  RA++ L    E  
Sbjct: 329 EQRLLQST--TGEYRWFLMQAVPFKDAQGTILKYVSTCTDIDEQKRAQQQLKTSEENW 384


>gi|254423212|ref|ZP_05036930.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190701|gb|EDX85665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 852

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 127/248 (51%), Gaps = 13/248 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL------NSKQ 606
           + L +   A   A++ K+ F+ ++S+ELR+PL  I+GFT L+++    +       +S  
Sbjct: 347 QQLEKTALAANTANKAKSEFLANMSHELRTPLNAILGFTQLMQSDHANTTYFQKERSSDY 406

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y+  IS S   LL L+ND+L ++ ++AG + L+ +   L  LL  +++ ++ +     
Sbjct: 407 NNYLGIISRSGGHLLTLINDVLSMSKIEAGRLTLDPTCFDLRYLLRTLEEMLSMRAEAKA 466

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIF 721
           I + V  D  +  FV  D  +L Q+   ++ NA+ F+  GS V L  + +N        F
Sbjct: 467 ITLSVQVDQAVPQFVKTDEAKLRQVLVNLVGNAIKFTPTGS-VTLSVSCENIPSLYRLNF 525

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           S+ + G  I  +    +F+ F   +      +G GLGL+I + F+ + GG +++ S  + 
Sbjct: 526 SIVDTGVGISAEDLSCLFDPFFQASRTRTAHQGTGLGLAISQRFVQMMGGEINVESIVDQ 585

Query: 781 VTTINCRI 788
            +T +  I
Sbjct: 586 GSTFSFSI 593


>gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1157

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 110/655 (16%), Positives = 223/655 (34%), Gaps = 54/655 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN----------T 226
           ++ +  +  + L      +++L ++   ++   D      + + + +            T
Sbjct: 261 DVTQNRIAERALEESERRYRLLAENATDIIIWSDLTARRRYVSPAVRAVLGYDPQDLIGT 320

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV---RVL 283
                V    +G  R++  E    R   +   ++        +      S+ +       
Sbjct: 321 HPLDFVHPDEVGAYRRVLDELTGGRASRALTSQRYRHRDGHWV--WLEISFSLTHDRATG 378

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD-----QNRYLQFHNRSFVEL 338
              G      DVS      D L  +      L  A+         +     + NR F + 
Sbjct: 379 APDGYVATLRDVSARKAAEDALRLSEARYRALADALPQLVWIASIETGDASYVNRRFEDY 438

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           +       A   +     +  R      E    +   E    + +    ++  WH     
Sbjct: 439 YGPIGPTRAARIARTHPDDAERMERLWSEAPTRRAPYEVEGRLQRHDGPYR--WH----- 491

Query: 399 TLHVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD- 453
              +++    +G    G +    ++   V    +      +          G      D 
Sbjct: 492 --KIVLLPIWQGETMVGMLGTALDIDEIVTARREVEAASSLLHLAQQAAHAGTWHLDLDS 549

Query: 454 GRIKLSNPAFRS--LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           GRI+ S  + R   +     + L     +  I         E       A    S +   
Sbjct: 550 GRIEWSPESARLHGIETDRNHVLDTRDWLALIDRGDGERAMEIAAAAAAAGETFSIEFRV 609

Query: 512 KSLQGTLELLSD----SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            +  G +  ++     +  +   +   N             + A+ A         +A  
Sbjct: 610 PTPDGGVRWINGVGRGAPGQARRMIGLNIDVTARKAAEAALLDAKAAADAACLQAERASA 669

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+E+R+PL  +IG+ DLL       L     +  + I  +   LL +VND+
Sbjct: 670 AKSEFLAAMSHEIRTPLNGVIGYADLLLDG--TDLGPAARRNADRIRTAGAALLTVVNDV 727

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           LD + V+AG +++      +  L++     +        + + V     L  ++  D  R
Sbjct: 728 LDFSKVEAGQIEIVPRPFAVEALIDNAVSIVRPSAERKGLALTVALGPGLPDWIEGDEDR 787

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARD------NGDFIFSVKNNGSSIPEDMCKSVF 739
           L QI   +L+NAM F++ G   + ++ + D           F+V++ G  IP D C  +F
Sbjct: 788 LRQILLNLLNNAMKFTASGGIDLSVRVSPDAASATGGTRLRFAVRDTGIGIPTDKCDRLF 847

Query: 740 NRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IPS 790
            RF  V  +   +  G GLGL+I +S + L GG + ++S+    +T      +P+
Sbjct: 848 RRFSQVDGSISREYGGTGLGLAISKSLVTLMGGTIGVASTVGHGSTFWFEADLPA 902



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 115/343 (33%), Gaps = 18/343 (5%)

Query: 290 GIAIDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           G+ +DV+  +    +   T       L ++   + + D  R ++  NRS  +L ++    
Sbjct: 131 GLILDVTDLVQSERRARETDMILRGTLDSMEQGLVVLDAGRRVRAFNRSAADLLDLPDDI 190

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L    +  ++  + R+     E  +   +        +        W LP+G  L V  +
Sbjct: 191 LRAGVALPDIHAYQRARGDFAEAGSDPGFAT--AGRGRGPLPPLFDWRLPSGLILEVRCS 248

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P GGT+  F ++T     E       +      ++ ++ +       R +  +PA R+
Sbjct: 249 ALPDGGTVLTFGDVTQNRIAERALEESERRYRLLAENATDIIIWSDLTARRRYVSPAVRA 308

Query: 466 LWKTEENRLSPGTHIRNI----AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           +   +   L     +  +         R  +E  G     A+ +     R      LE +
Sbjct: 309 VLGYDPQDLIGTHPLDFVHPDEVGAYRRVLDELTGGRASRALTSQRYRHRDGHWVWLE-I 367

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S S+        P+   + T  +V+    AE AL       R   +     V   S E  
Sbjct: 368 SFSLTHDRATGAPDG-YVATLRDVSARKAAEDALRLSEARYRALADALPQLVWIASIE-- 424

Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623
              T    + +       G +  ++ ++        +  +  L
Sbjct: 425 ---TGDASYVNRRFEDYYGPIGPTRAARIARTHPDDAERMERL 464



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 111/373 (29%), Gaps = 50/373 (13%)

Query: 67  DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE--NWLKFHHY 124
           ++  + + LL EN    I+W         +     R  +     DL+     +++     
Sbjct: 273 EESERRYRLLAENATDIIIWSDLTARRRYV-SPAVRAVLGYDPQDLIGTHPLDFVHPDEV 331

Query: 125 IKLSKATEKLRKEGQSFDLV---AETQNDCAI-----------KIEGRVSGSCAFLRILS 170
               +  ++L     S  L       ++   +           +  G   G  A LR   
Sbjct: 332 GAYRRVLDELTGGRASRALTSQRYRHRDGHWVWLEISFSLTHDRATGAPDGYVATLR--- 388

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETE 229
                 +++        L    + ++ L D+L  LVW    + GD  + N  ++      
Sbjct: 389 ------DVSARKAAEDALRLSEARYRALADALPQLVWIASIETGDASYVNRRFEDYYGPI 442

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNF-CETVSTLEHGNNKSYKIVRVL----- 283
           G      I  +     E +++    +      +  E       G  + +KIV +      
Sbjct: 443 GPTRAARIARTHPDDAERMERLWSEAPTRRAPYEVEGRLQRHDGPYRWHKIVLLPIWQGE 502

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
              G  G A+D+ + +T   ++     +LH    A               +    W +DL
Sbjct: 503 TMVGMLGTALDIDEIVTARREVEAASSLLHLAQQA---------------AHAGTWHLDL 547

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                  S +         ++    L+ + W   I                  G+T  + 
Sbjct: 548 DSGRIEWSPESARLHGIETDRN-HVLDTRDWLALIDRGDGERAMEIAAAAAAAGETFSIE 606

Query: 404 VT-SNPRGGTIWM 415
                P GG  W+
Sbjct: 607 FRVPTPDGGVRWI 619



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 7/187 (3%)

Query: 394 LPNGQTLHVIVTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
            P+G  L  I+   P  G          +  ++T  V  E +      +   T+D + +G
Sbjct: 104 RPDGTVLDAIIQGLPESGPDGALVALHGLILDVTDLVQSERRARETDMILRGTLDSMEQG 163

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           + V     R++  N +   L    ++ L  G  + +I A      + ++           
Sbjct: 164 LVVLDAGRRVRAFNRSAADLLDLPDDILRAGVALPDIHAYQRARGDFAEAGSDPGFATAG 223

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
                        L S  +LE     LP+  T+LTF +VT +  AERAL E     R   
Sbjct: 224 RGRGPLPPLFDWRLPSGLILEVRCSALPDGGTVLTFGDVTQNRIAERALEESERRYRLLA 283

Query: 567 EIKNSFV 573
           E     +
Sbjct: 284 ENATDII 290



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/389 (11%), Positives = 102/389 (26%), Gaps = 31/389 (7%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +++L G+  ++ +     ++      + +   DS++  +   D    +   N S     +
Sbjct: 126 LVALHGLILDVTDLVQSERRARETDMILRGTLDSMEQGLVVLDAGRRVRAFNRSAADLLD 185

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSS-----ALEKNFCETVSTLEHGN---NKSYKI 279
               + +  +        +  +     +      A        +  L           ++
Sbjct: 186 LPDDILRAGVALPDIHAYQRARGDFAEAGSDPGFATAGRGRGPLPPLFDWRLPSGLILEV 245

Query: 280 VRVLNSFGEAGIAI-DVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
                  G   +   DV+     E  + +       +  N T  I   D     ++ + +
Sbjct: 246 RCSALPDGGTVLTFGDVTQNRIAERALEESERRYRLLAENATDIIIWSDLTARRRYVSPA 305

Query: 335 FVELWEIDLAFLATNPSND--ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
              +   D   L      D     E       L E    +  +      Y+  + H   W
Sbjct: 306 VRAVLGYDPQDLIGTHPLDFVHPDEVGAYRRVLDELTGGRASRALTSQRYRHRDGHW-VW 364

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              +    H   T  P G  +    +++ +   E              D L + V +   
Sbjct: 365 LEISFSLTHDRATGAPDGY-VATLRDVSARKAAEDALRLSEARYRALADALPQLVWIASI 423

Query: 453 D-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           + G     N  F   +                           D  +    + +     R
Sbjct: 424 ETGDASYVNRRFEDYYGPIGPT-----------RAARIARTHPDDAERMERLWSEAPTRR 472

Query: 512 KS--LQGTLELLSDSVLEYSIIPLPNAQT 538
               ++G L+        + I+ LP  Q 
Sbjct: 473 APYEVEGRLQRHDGPYRWHKIVLLPIWQG 501


>gi|60680953|ref|YP_211097.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|253563207|ref|ZP_04840664.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265762908|ref|ZP_06091476.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|60492387|emb|CAH07154.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|251946983|gb|EES87265.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263255516|gb|EEZ26862.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 870

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 104/511 (20%), Positives = 207/511 (40%), Gaps = 38/511 (7%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +  Q      + H++   +  +D +  + F NRS +++  +               E
Sbjct: 375 QNRLVAQRDEFDNVFHSIRDGVITYDTDFRIHFTNRSLLKMLHLPKD------------E 422

Query: 358 FLRSANKLPEQLNWKTW---KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN--PRGGT 412
             R    LP    +K +   KE +  + K   T + +  +P    +  + + +  P  G 
Sbjct: 423 AARPYEGLPAGSIFKIYNNGKEILRPMLKQVVTEESSVVIPENSFMQEVHSGSYFPVSGE 482

Query: 413 IWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           +        +T  + L  +  +  ++Q        +  +++     I+     F + + T
Sbjct: 483 VVPIRAHGKITG-MALSARNISDEEMQKRFFSMAVDESSIYPWQYNIRTGLFTFPAGFLT 541

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD----SV 525
                   T I        R  +  D    +     +     +S + +   LS       
Sbjct: 542 RFGFAENKTTISR--GEMDRMIHPDDQESAYEIFNRALAGLSQSTRMSFRQLSGDGNYEW 599

Query: 526 LEYSIIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            EY    L           +    ++      E  LT   +   +AD++K++F+ ++S+E
Sbjct: 600 WEYRTSVLAGLTTDTPYSILGVCQSIQRYKTTEEELTAARDKALQADKLKSAFLANMSHE 659

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL  +  G    +   ++E I+ +  +LL L+NDILDL+ +++G M 
Sbjct: 660 IRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIETINKNCGLLLALINDILDLSRIESGTMD 718

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNA 698
             ++   L  L+  V  S    M    +++ +          V D  RL Q+ + +++NA
Sbjct: 719 FQFAGHNLPLLMKNVYDSQRLNMPP-GVQLVLKLPENSKKYLVTDNVRLQQVVNNLINNA 777

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + F+++GS        + G     V++ G  I ED  + +F RF       Q  G GLGL
Sbjct: 778 VKFTTQGSITFGYTEEEPGYTSLFVEDTGKGISEDGLRHIFERFYKVDSFTQ--GAGLGL 835

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI ++ +    G ++++S +   T    R+P
Sbjct: 836 SICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866


>gi|88861389|ref|ZP_01136019.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
 gi|88816655|gb|EAR26480.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
          Length = 1106

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 87/514 (16%), Positives = 201/514 (39%), Gaps = 33/514 (6%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+S     N+     + +++     I   D    +   N++   +       L  +    
Sbjct: 264 DISLLAKSNE--DRLHAMMNTAIDGIITIDAKGNVVSVNQAVETILGWQACELIGSNVKK 321

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-- 411
            +   +   +         T +  I  + +         HL     +H+ +    +G   
Sbjct: 322 IMPSAIADEHDNFLTRYLNTRQAKIIGIGREVTAVHKQGHL---VPVHLGIGHVKQGKEH 378

Query: 412 -TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD---GRIKLSNPAFRSLW 467
             +    +LT +  +E             I ++  G+A    +     +   + A +++ 
Sbjct: 379 FFVGFISDLTKRNTMELALKRKESKFRSLISNIP-GIAYRCKNEPGWPMVYISNAVQTIT 437

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SV 525
               +                R++++    D  A I +       +L+  +         
Sbjct: 438 GYAPSEFELPNP--------QRFFSDLYHPDDIAFIESQAKPPTFALEYRIIRRDGQIRW 489

Query: 526 LEYSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L      + +  +  T+     +++T+    E+ L    E   +A   + +F+ ++S+E+
Sbjct: 490 LFEHGNYIQDNNSGETWLDGFIMDITERKEMEQDLLLAKEHAEQAAAARAAFLANMSHEI 549

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  IIGF+D+L  +   +L+ +Q +++  IS S+  LL+L+ND+LD A +D G ++L
Sbjct: 550 RTPMNAIIGFSDILLDT---ALDKEQLKHLSTISRSAKSLLHLLNDVLDSAKLDKGKLEL 606

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
                 L D ++ V  ++  +  + N+ ++     K+   ++   +RL QI + ++ NA+
Sbjct: 607 ENRVFSLTDEIDTVVSTLWLQAKQQNLALEADISPKMASHYLGSPERLRQILTNLIGNAV 666

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
            F+++G   +           F + + G  +  +  + VF+ F         +  G GLG
Sbjct: 667 KFTAQGKVTVKIYPSAEQSVTFEIIDTGIGMSAEQLEHVFDAFSQADASMSRKYGGTGLG 726

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +I +  + L GG + + S     +     +P +
Sbjct: 727 TTISKQLVELMGGEIEVESELGKGSIFRFTLPMQ 760


>gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
 gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
          Length = 925

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+   L+ +Q  Y+  I
Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSE---LSPRQQDYLTTI 325

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L      L DL+ +    +A   HE  + +  ++
Sbjct: 326 QKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLV 385

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNG 727
                     D QRL QI + ++ NA+ F+ +G TV ++A     + D      SV++ G
Sbjct: 386 YRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISVQDTG 444

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + E+  +++F  F    +    Q  G GLGL I +  I   GG + + S+        
Sbjct: 445 IGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFW 504

Query: 786 CRI 788
             +
Sbjct: 505 ISL 507


>gi|110801347|ref|YP_696443.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|168207284|ref|ZP_02633289.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|168210610|ref|ZP_02636235.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|182625884|ref|ZP_02953650.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|110675994|gb|ABG84981.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|170661350|gb|EDT14033.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170711264|gb|EDT23446.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|177908918|gb|EDT71410.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 571

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 161/382 (42%), Gaps = 43/382 (11%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +  Q+++   ++          +  +  GV  F  D  + + NP  + ++      +
Sbjct: 222 FNYMAEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEII 281

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPL 533
                            N+   +     ++ +F DE+  ++  +    D  +L+     +
Sbjct: 282 G----------------NKLLDYITDKEVLKAFFDEKDRVEIEVNYNDDPKILKIRKASI 325

Query: 534 PNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            N      T++   ++TD  + E               +++ FV ++S+EL++PLT+I G
Sbjct: 326 INEPEIIGTVVVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKG 371

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F + L+       +  +++++  I   S  L  L+ DIL L  ++     +      +++
Sbjct: 372 FAETLR---YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDE 427

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + +V   +  +  +  + I + ++      + D+ +  Q+   ++SN++ ++ KG  V 
Sbjct: 428 EIEKVYMLLNDQAKKKGVEIFLDTNSN-CVLMGDKDKFKQMLLNLVSNSVKYTEKGGKVR 486

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +++   + + +  +++NG  I  +    +F RF         +  G GLGL+IV+  + L
Sbjct: 487 VESYNRDMNLVLVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRL 546

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
             G ++++S     T I   IP
Sbjct: 547 FDGEINVTSELGVGTKIVITIP 568



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           +     +   ++S+    NF + V      +    +I R+  SF      ++++ E   +
Sbjct: 183 ILNPLKELEQLTSTIASGNFHKRVKINSKDD----EIQRLGKSFNYMAEQLEITMERFKD 238

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            Q      IL ++   +  FD++  +   N    +++ I    +        LL+++   
Sbjct: 239 KQ-NGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNK-----LLDYITDK 292

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWMFEN 418
             L    +            +      +  +  + + L +    I+      GT+ + ++
Sbjct: 293 EVLKAFFD------------EKDRVEIEVNYNDDPKILKIRKASIINEPEIIGTVVVIQD 340

Query: 419 LTVQVDLE 426
           +T    LE
Sbjct: 341 ITDIKKLE 348


>gi|70730352|ref|YP_260091.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68344651|gb|AAY92257.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1059

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 154/390 (39%), Gaps = 29/390 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +     +     +   + G+  +       ++N  +  +    + ++       +    
Sbjct: 322 AQIEQSEQRLDMALQSGALGLWDWNLSLGTVINNDVWLQILGYSKQQMEQA--FGHGLER 379

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNA----- 536
            +   +  D   + A +    +DE    +    + +       VL+   I   +A     
Sbjct: 380 WTALVHPDDYEPVMARLKAHLNDEVGEYRAEYRMRNKEGQWLWVLDIGKIMQRDASGAPA 439

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +      ++++    E  + +  +   +A + K+ F+  +S+E+R+PL  IIG   L   
Sbjct: 440 RVTGVLQDISERKAVEAQIQQSRQDAERATQAKSEFLDCMSHEIRTPLNAIIGMAHLALD 499

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L   Q  Y+E I  ++  L+  +N +LDL+ ++AG + +      L +L+++V  
Sbjct: 500 L---PLEPVQRDYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRELVDDVLL 556

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVILK 711
            +  +  E  +R+++     L   +V D  RL Q+ + ++ NA+ F+  G       +++
Sbjct: 557 LVRQRAEEKALRLQLDIPASLPHRYVGDPLRLAQVLTNLVDNAIKFTEAGHVCIGVYLVR 616

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
                    FSV + G  I ++    +FN FV        +  G GLGL+I +  + L  
Sbjct: 617 QWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISKKIVQLMQ 676

Query: 770 GHVSISSSDEGVTTINCR-------IPSKE 792
           G + + S      T           +P +E
Sbjct: 677 GDIRVKSQPGQGATFKFSVQLSLPPLPLEE 706


>gi|239909191|ref|YP_002955933.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239799058|dbj|BAH78047.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 722

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 187/514 (36%), Gaps = 45/514 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                +               V IA    +      N  F ++   D+            
Sbjct: 216 EARSELAASERRFRGTFELAAVGIAHVGLDGRFLRVNARFRDITGYDVVEFDR------- 268

Query: 356 LEFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRG 410
           L+F  +A   P+ L+    +  ++ S   ++ +    +   +G  + + +T     +  G
Sbjct: 269 LDF--AAITYPDDLDADLERVSDLLSGRLATYSMDKRYVRKDGSLVWITLTVSLVRDDDG 326

Query: 411 GTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
             ++   +  +++ +   E           E +D  S+ V V    G++   N A  +  
Sbjct: 327 APLFFISVIADVSARKAAEAAARDNAAAVRELLDAASDRVVVADASGQVLAVNAAAAAGL 386

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                 +   T                    +       F DER  +          + +
Sbjct: 387 GLPGEAIVGKTFAEVFPGKVGENRLAQLRRAVELGRRMRFTDERAGI----------LFD 436

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
               PLP     L    +        A+ +  +A   A + K+ F+ +VS+ELR+PL  I
Sbjct: 437 IIAAPLPTPADALPRAALFARDAT--AMIQARQAAEAASQAKSDFLANVSHELRTPLNGI 494

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG   +L  S   +L+  Q Q +  I  ++  LL+LV ++LDL+ +++  + L+    VL
Sbjct: 495 IGMGQVLAAS---NLDPDQRQCLADIEQAAGALLHLVENLLDLSRLESEKLALDNQPFVL 551

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
           + +L  V+ ++A    E  + +     G +      D  +L Q    +  NA+ F+  GS
Sbjct: 552 SSILQGVEATLAPLAQEKGLELSAAVAGDVPELLYGDGGKLRQALLNLGGNAVKFTPAGS 611

Query: 707 TVI--------LKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
             I        + A  +       F+V++ G  I +   + +F RF        RR  G 
Sbjct: 612 VTIEAYCAKPCVLAGPEGETVEVGFAVRDTGIGIAKADQERIFERFTQVDASSTRRFGGT 671

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL+I    I   GG +++ S     +     +
Sbjct: 672 GLGLAISRGLIEAMGGELAVDSEHGQGSVFRFCL 705


>gi|323137204|ref|ZP_08072283.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397562|gb|EFY00085.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 623

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 3/225 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDI 627
           K  F+ +VS+ELR+PL  IIGF+++L   +L   +  KQ +Y E IS S   LL +VN I
Sbjct: 359 KTRFLANVSHELRTPLNAIIGFSEMLANPELAPTDPGKQREYAEIISNSGHHLLEVVNTI 418

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ +++G M++      L  L+++    +  K  ++ + +       +   VAD++  
Sbjct: 419 LDMSKIESGSMQIFPEPFSLPALIDQCCDMVQLKADQSAVTLLRDYRRDIDDLVADKRAC 478

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +LSNA+ F+     V ++ A +      SV ++G  I       + + F   + 
Sbjct: 479 KQILLNLLSNAVKFTPANGKVKIRLAPEGNHLGISVIDSGIGIAPADLARLGDPFFQASA 538

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  G GLGLS+V   + LHGG +++ S+    T++  R+P 
Sbjct: 539 SHDRTHEGTGLGLSVVRGLVGLHGGSITVESAPRKGTSVTVRLPL 583


>gi|307304331|ref|ZP_07584083.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306902799|gb|EFN33392.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 531

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 97/376 (25%), Positives = 163/376 (43%), Gaps = 29/376 (7%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY---YNESDGWDLF 500
           ++G   F P   +   N A+           + G  +       S Y     +  G    
Sbjct: 95  TDGEVEFAPAPELPDLNAAYDLFAGLVTVHDTRGHVLSVHGRDASEYLKLMRDPHGRGFI 154

Query: 501 AAIITS-------------FDDERKSLQGTLELLSD-----SVLEYSIIPLPNAQT---- 538
             I  S              D ER ++   LE  S      + +   + PL +A+     
Sbjct: 155 EQIHVSDRIAFLRAIDSLRLDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLA 214

Query: 539 -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    +V++  R +     K      A++ K  F+  VS+ELR+PL  I+GF+D+L   
Sbjct: 215 IVAQSRDVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGE 274

Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G L N +Q +YV  I  S T LL++VN +LD++ ++AG  +L      + + +   + 
Sbjct: 275 YFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEA 334

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            ++ +  E  +R+       +G   AD++   QI   ++ NA+ F+ +G  V + AA + 
Sbjct: 335 MLSHQAREKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEG 394

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V + G  I  D  + +   FV   N +  +  G GLGLS+V+    LHGG VSI
Sbjct: 395 NMLKLTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSI 454

Query: 775 SSSDEGVTTINCRIPS 790
            S++   T I   IPS
Sbjct: 455 RSAEGEGTVIVVTIPS 470


>gi|294507653|ref|YP_003571711.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|294343981|emb|CBH24759.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 936

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 130/780 (16%), Positives = 279/780 (35%), Gaps = 83/780 (10%)

Query: 59  YSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDT-------- 110
              +    D L +   L+  +    +  D +    +  G++ + +   + D         
Sbjct: 185 RMTIRRQRDLLDR---LVETSPGAIVRLDQEGTFVQANGRVAEVLKSSEDDICGRTYAEL 241

Query: 111 --DLLSFENWLKFHHYIKLSKATEK---LRK--------EGQSFDLVAETQNDCAIKIEG 157
              L  F         +      E    +R         +G    L     +   ++ EG
Sbjct: 242 EWTLTPFGADTMPEEAVPFDHVLETGASVRDVELSVQWPDGTQRVLSV---SGAPLQAEG 298

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL-VWHRDQAGDIL 216
           +  G+   LR         ++ +   + + L      ++ L D+     V+   +     
Sbjct: 299 KGPGAVFHLR---------DITDRVRREQTLRRVKERYQTLVDNFPDGGVFLFGEDLRFR 349

Query: 217 WANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLE-HGNN 274
               +  +  E+ G+      G++   LF +EI +  ++      +  + V   E  G +
Sbjct: 350 L---AGGQRLESAGLPPSNVEGKTPHDLFPDEIAREHVTYFRRALDGEKHVYEQEYQGQH 406

Query: 275 KSYKIVRVLNSFGEA--GIAI--DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
              + + +    G+   G+A+  D+++      +L  +  +  N   A+ + D     + 
Sbjct: 407 YRVQTLPIRGKAGDVISGLAVSQDITERKERERRLRQSETLFQNAQDALFLLDVKEEEEA 466

Query: 331 H-------NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
                   N  + E +    A +      +      R              K      ++
Sbjct: 467 WAFRYRRVNPVYEEQFGHAEAEIRGRSPREVFGGDARRLMM---------EKCRRCVQHR 517

Query: 384 SSETHKDTWHLPNGQTLH-VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            +  +++T  L   +T     +      G +     +T  V  + +    ++ Q +  D 
Sbjct: 518 EARLYEETISLEGRETYWKTRIAPVLVEGRVRQIVGITRDVTEQHRRQEALERQNDLFDR 577

Query: 443 LSE--GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
             E   V  +  D R   SN       K     L          +T   YY+  D   + 
Sbjct: 578 AQEIASVGAWEYDARADASN-----WTKKAYEILGYPPDADPNPSTAVGYYHPEDQPRVQ 632

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ------TMLTFVNVTDSVRAERA 554
            A+  +  + + S         D V    I   P  +         T  ++T+  + ERA
Sbjct: 633 KALRDALQEGKPSDLEVRVAAGDEVRWARIRGEPQWEDGEVVRIRGTIQDITERKQRERA 692

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG---SLNSKQSQYVE 611
           L E  +   +A ++K+S + ++S+E+R+PLT+IIGF +             +S   +Y E
Sbjct: 693 LREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKELDLPDDSPLPKYAE 752

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL  +  +L+L+ ++AG M+L    + L +    V + +  +  E  + +++
Sbjct: 753 LIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAEELRPRAEEKEVSLQL 812

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            ++       AD+  +  +   +LSNA+ ++  G  V L+  R+ G   F V++ G  + 
Sbjct: 813 ETEAAWAE--ADKGGVQILARNLLSNAVKYTEAGGRVRLRTYREEGAVAFEVEDTGIGMD 870

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + +F  F   +     + +G G+GL++ +       G + + +     T I   +P
Sbjct: 871 PETAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSIDVETEKGEGTRITVWLP 930


>gi|254463944|ref|ZP_05077355.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
 gi|206684852|gb|EDZ45334.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
          Length = 755

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 85/439 (19%), Positives = 162/439 (36%), Gaps = 45/439 (10%)

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE------NLT-----VQVDLETKY---- 429
           +  H   W   +   LH+   +       W         ++T      Q   +       
Sbjct: 174 AFLHSQGWERASSPQLHLAGLAMLYAAVGWALYFASRNFDITRANLLAQAQQQEALEAAN 233

Query: 430 ------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
                     +      ++ ++   +   +GR   +N AF  +        + G  + ++
Sbjct: 234 ASLKVQRAEARRLALVAENANDITRLLDREGRTLWANDAFTRVTGYTLAE-AKGKLLGDL 292

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTML 540
                   +     ++ A I  +    R      L    D     LE + +P+ +A   +
Sbjct: 293 IR------DPDTSLEVLARISEARQAGRPLRVEILNRSKDGRTFWLETNQVPMLDACGRV 346

Query: 541 TFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                 +         E+ L +   A  +    K  F+  +S+E+R+P+  +IG   LL+
Sbjct: 347 DSYVAIERDITAAKLHEQELEKARIAAEEGARAKADFLATMSHEIRTPMNGVIGMAQLLR 406

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    LN +Q  Y   I +S+  LL L+ND+LD++ +DA  + L+ +         +  
Sbjct: 407 DS---GLNEEQELYAGAILSSADTLLALINDVLDVSKMDAEGVSLSCTDFDPRACFEDTM 463

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
           + +  +     + + +     + +    D +R+ QI   +  NA+ F+ +G   V L A 
Sbjct: 464 RLLKAQAEAKGLDLLLDIKACVPARLHGDDRRIRQILLNLAGNAIKFTERGQVQVTLDAE 523

Query: 714 R--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
                   +FSV + G  IP +M   VF RF         +  G GLGL+I        G
Sbjct: 524 PAGQGTGLVFSVADTGIGIPREMLSKVFERFSQADAAISRRFGGTGLGLAISRRLAEAMG 583

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +    R+
Sbjct: 584 GSISVASDLGIGSCFTVRL 602


>gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1223

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 167/413 (40%), Gaps = 36/413 (8%)

Query: 400  LHVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV-FGPDGR 455
            LH+    +  G  +      +++T +V +E              D+L  GV +   P   
Sbjct: 676  LHLRTLRDVSGNAVVTRGAMQDVTYRVSIENALRRSESSYRALADNLPNGVVLLVDPADI 735

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            ++++  A + L    ++          I A  +         +L   I+++    R    
Sbjct: 736  LRVA--AGQGLHSLLDSGAPC------IPAPYTTILPSPLATELMPLIMSA----RHGTT 783

Query: 516  GTLEL-LSDSVLEYSIIPLPNA---------QTMLTFVNVTDSVRAERALTEKNEALRKA 565
               E+    +V +   +PLP             ML   +VT   + E  +    +     
Sbjct: 784  AHREIPYGAAVFDVVALPLPGETHRTEGVAHDVMLLLQDVTSRKQWEEQMRASRDEAAAM 843

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             E+K+ FV ++S+E+R+PL+ I+G  D+  T++     +    Y   +   +  LL ++N
Sbjct: 844  SELKSQFVANISHEMRTPLSGILGIADVALTTEGNP--ALLRNYFSMVQNVAEGLLGVIN 901

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
            D+LD + ++AG M L+     L+  + +    +A +     + +++     L  +   D 
Sbjct: 902  DLLDFSRLEAGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNGLPLTLRGDP 961

Query: 685  QRLLQIFSKILSNAMDFSSKGST-VILK----AARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             RL QI   ++ NA+ F+ +G+  V +        D    +F++++ G  IP +    +F
Sbjct: 962  LRLRQILVNLVGNAVKFTPQGTVHVDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIF 1021

Query: 740  NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              F         Q  G GLGL+I    + L GG + + S+    +     +P 
Sbjct: 1022 ESFAQADGSYSRQHTGSGLGLAISRHLVELQGGDIGVQSTPGEGSVFWFTLPL 1074


>gi|116623382|ref|YP_825538.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226544|gb|ABJ85253.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 796

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 129/259 (49%), Gaps = 15/259 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG-----S 601
           +  +    L    EA   A++ K+ F+ ++S+ELR+P+  IIG++++L           +
Sbjct: 270 ELEQRHHELQLLMEAAESANQAKSQFLANMSHELRTPMNAIIGYSEMLMDEAQDMASASA 329

Query: 602 LNSKQSQY---VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L   ++ +   ++ I+A+   LL L+NDILDL+ ++AG M L   T  + +++N+V  +I
Sbjct: 330 LPEVEAVFVPELKKITAAGRHLLALINDILDLSKIEAGKMDLYLETFQIPEMVNDVACTI 389

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              + +N  R+++     +G   AD  ++ Q+   +LSNA  F+ KG  + L+    + +
Sbjct: 390 QPLVDKNANRLQIDISPGIGPMRADLTKVRQVLFNLLSNASKFTDKG-VIELRVFNHHDE 448

Query: 719 FI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                 F VK++G  +  +    +F  F        R   G GLGL+I   F  L GG +
Sbjct: 449 ARDWIAFQVKDSGIGMTREQAARIFEAFTQADASTTRKYGGTGLGLTITRKFCELMGGRI 508

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S     T    R+P +
Sbjct: 509 TVDSEPGQGTVFTVRLPLE 527


>gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2]
 gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
 gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1]
 gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1]
 gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
          Length = 925

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+   L+ +Q  Y+  I
Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSE---LSPRQQDYLTTI 325

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L      L DL+ +    +A   HE  + +  ++
Sbjct: 326 QKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLV 385

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNG 727
                     D QRL QI + ++ NA+ F+ +G TV ++A     + D      SV++ G
Sbjct: 386 YRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISVQDTG 444

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + E+  +++F  F    +    Q  G GLGL I +  I   GG + + S+        
Sbjct: 445 IGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFW 504

Query: 786 CRI 788
             +
Sbjct: 505 ISL 507


>gi|167820093|ref|ZP_02451773.1| two-component sensor kinase protein [Burkholderia pseudomallei 91]
          Length = 709

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 87/509 (17%), Positives = 195/509 (38%), Gaps = 31/509 (6%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 203 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 262

Query: 353 DEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--- 408
             L      +   +         +    S+          +   +G  L V   + P   
Sbjct: 263 RVLTFRHAATQRVIDNPARVAVERRRTASL-----PAHTRFVGRSGGELPVDGNAAPTFD 317

Query: 409 ----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G + +  +++ +           +     ++     + + G DGRI L N    
Sbjct: 318 ANGKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAE 370

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+      +  G  I  +     R  + +     F         E + L G     S+ 
Sbjct: 371 KLFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 429

Query: 525 VLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+
Sbjct: 430 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 489

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++  
Sbjct: 490 EPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDA 547

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F
Sbjct: 548 RRPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKF 604

Query: 702 SSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL+
Sbjct: 605 RGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLA 664

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +  +  HGG + + S     TT +  +
Sbjct: 665 LCKRIVEHHGGRIFVESEPGQGTTFSFTL 693


>gi|300867975|ref|ZP_07112614.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300333996|emb|CBN57792.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 574

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 121/264 (45%), Gaps = 26/264 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L E   A   A+  K++F+ ++S+ELR+PL  II ++++L+              +E 
Sbjct: 309 EELQEAKIAAEAANRSKSAFLANMSHELRTPLNAIINYSEMLQEDAQDEGYEDFLPDLER 368

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  +   LL++++DILD++ ++AG + L      + +++ EV  +    + +    + + 
Sbjct: 369 IQTAGKHLLDMISDILDISKIEAGHVTLYLENFDIANMIEEVVTTAQPLVEKKGNTLAMQ 428

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------- 718
            +G +G+  AD+ ++ QI   +LSNA  F+ KG  + L   R   D              
Sbjct: 429 INGDVGTMYADQPKVRQILLNLLSNAAKFTEKG-VITLSIERIKNDKFKSKNKKYKQEYP 487

Query: 719 ---------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                     IF V + G  + E+  + +F  F        R   G GLGL+I +    +
Sbjct: 488 PALNSNSQVLIFRVSDTGIGMTEEQLQHIFKPFTQADASTTRKYGGTGLGLTISQRLCQI 547

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
            GG +++ S  E  +T   R+P +
Sbjct: 548 LGGEIAVESEVERGSTFTVRLPER 571


>gi|91070383|gb|ABE11297.1| two-component sensor histidine kinase [uncultured Prochlorococcus
           marinus clone HF10-88H9]
          Length = 688

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 159/390 (40%), Gaps = 47/390 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  + L++ E   L     +  I   
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKYFLNEIPEI 347

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            S   + + G  L        DD R SL     TL ++  SVL+ + + L          
Sbjct: 348 LSNDLHTNIGSILNRE--KEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAV----- 400

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  +N F+ +VS+ELR+PL NI  + + L   K    +
Sbjct: 401 -TIQDLTREVEL----------NAAQNRFISNVSHELRTPLFNIKSYVETLHDLKDQLSD 449

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G + +    I +   + +  ++      
Sbjct: 450 EEQIEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLDQIDIKPAIEQTLRNYRLNAT 508

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           E N+ +    +  +   + +   LLQ+F  +L N + FS K S++I++A           
Sbjct: 509 EKNVSLAHEIEETIPPILGNFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFP 568

Query: 718 ------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGL 758
                                  + + GS I +   + +F+RF    +     +G GLGL
Sbjct: 569 PNIKNDAAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSVHTEQGTGLGL 628

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           SIV   I  HGG + ++S     TT    +
Sbjct: 629 SIVRGIIEKHGGEIRMASELGVGTTFWFDL 658



 Score = 44.9 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D    +   N +   L+  +  FL      +
Sbjct: 283 DEANIEELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKYFLN 342

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           E+ E L +        +  T   +I +  K  +  + +   P  +TL +++ S       
Sbjct: 343 EIPEILSN--------DLHTNIGSILNREKEKDDLRFSLGEP-ARTLRIVLQSVLDTNKV 393

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    N  +
Sbjct: 394 ELKGIAVTIQDLTREVELNAAQNRFI 419


>gi|27379871|ref|NP_771400.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27353024|dbj|BAC50025.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 775

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 147/378 (38%), Gaps = 16/378 (4%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           NL  Q++LE +   +  +  +  ++ S+ +     +G +      F  + +     L  G
Sbjct: 225 NLKAQLELERQTEIISLLLKDFQENASDWLWQTDAEGHLVDVPERFADVAQL-PLPLLKG 283

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +H  ++          +        ++   +   +     +      +  ++  P  +  
Sbjct: 284 SHFADVLDMLCPEDKSAAYN--IVGLMEHAEPLHEMNLKVVAGGEARLWSFTAKPAYDRD 341

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                         ER    + E        K+ F+  +S+E+R+P+  ++G   +L  +
Sbjct: 342 GQFLGYRGFGRDVTER---WRAEKAEAESRAKSDFLAVMSHEIRTPMNGVLGLASMLLET 398

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+ +Q + V  I  S   L  ++NDILDL+ ++AG           + L+  V   
Sbjct: 399 R---LDPEQREAVATIRESGDNLQRILNDILDLSKLEAGRFAFEAIDFAPHALVETVATV 455

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +        + +KV  D  L  +   D  R+ Q+   + SNA+ F+ +G   I    +  
Sbjct: 456 VRASAKSKGLTVKVELDPNLPPTLRGDVARIRQVLLNLASNAVKFTDEGEVTISATCQTR 515

Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            D      ++VK++G  I  +    +F+ F        RR  G GLGL+I    I   GG
Sbjct: 516 RDLLATVEWTVKDSGIGIAPEKLGLLFSDFAQADASISRRFGGTGLGLAISRRIIEQMGG 575

Query: 771 HVSISSSDEGVTTINCRI 788
            + ++S+    +T    +
Sbjct: 576 TIGVTSTPGEGSTFRFTL 593


>gi|260220546|emb|CBA28192.1| hypothetical protein Csp_A06050 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 640

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 10/251 (3%)

Query: 548 SVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              AER    L +  +A  +A++ K+ F+ ++S+E+R+P+  ++G T LL  S   +LN 
Sbjct: 228 RWVAERQTDELRQARDAAEQANQAKSDFLANMSHEIRTPMNGVLGMTGLLLES---NLNK 284

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  Y   I  S   LL ++NDILDL+ ++AG M+   +   L+ L++ V   +  +  +
Sbjct: 285 EQRDYATSICHSGEALLAIINDILDLSKIEAGRMEFESNPFSLDVLVDSVVSVLRIRAED 344

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +   V + +G    +V D  R+ Q+   +L NA+ F+ +G  V L+         F V
Sbjct: 345 KGVFFSVGLPEGDGMDYVGDSLRIRQVLFNLLGNAVKFTMQGE-VRLEIKVITNGLRFEV 403

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  I ++    +F+ FV       R   G GLGL I    +    G + + S     
Sbjct: 404 RDSGIGISQEGLARIFSNFVQVDSSTSRKFGGTGLGLVISRKLVEGMNGSMGVESELGQG 463

Query: 782 TTINCRIPSKE 792
           +  +  +P K+
Sbjct: 464 SCFSFELPLKQ 474


>gi|218246976|ref|YP_002372347.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218167454|gb|ACK66191.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 845

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +A   A+  K+ F+ ++S+E+R+PL  IIGF+DLL+T      + K   Y+  I 
Sbjct: 349 LQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTLVR---DYKSRSYLRSIV 405

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL L+NDILDL+ ++A  ++L    + L  L+ E+KQ  + +  + NI +     
Sbjct: 406 SSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQKNIELITDVS 465

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSS 729
             +   +  D  RL QI   ++ NA+ F+ KG   + +     + +       V++ G  
Sbjct: 466 SDIPLLIEFDEIRLRQILFNLVGNALKFTQKGYIKITVNCDYLDLNKITIRIYVQDTGIG 525

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP D    +F  F            G GLGL+I +    + GG +S+ S  E  +T    
Sbjct: 526 IPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTISLHSESEKGSTFLMI 585

Query: 788 IP 789
            P
Sbjct: 586 FP 587


>gi|76819580|ref|YP_335541.1| sensory box histidine kinase [Burkholderia pseudomallei 1710b]
 gi|254264074|ref|ZP_04954939.1| sensory box histidine kinase [Burkholderia pseudomallei 1710a]
 gi|76584053|gb|ABA53527.1| sensory box histidine kinase [Burkholderia pseudomallei 1710b]
 gi|254215076|gb|EET04461.1| sensory box histidine kinase [Burkholderia pseudomallei 1710a]
          Length = 723

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/509 (17%), Positives = 195/509 (38%), Gaps = 31/509 (6%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 217 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 276

Query: 353 DEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--- 408
             L      +   +         +    S+          +   +G  L V   + P   
Sbjct: 277 QVLTFRHAATQRVIDNPARVAVERRRTASL-----PAHTRFVGRSGGELPVDGNAAPTFD 331

Query: 409 ----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                 G + +  +++ +           +     ++     + + G DGRI L N    
Sbjct: 332 ANGKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAE 384

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+      +  G  I  +     R  + +     F         E + L G     S+ 
Sbjct: 385 KLFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 443

Query: 525 VLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDA 561

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F
Sbjct: 562 RRPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKF 618

Query: 702 SSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL+
Sbjct: 619 RGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLA 678

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +  +  HGG + + S     TT +  +
Sbjct: 679 LCKRIVEHHGGRIFVESEPGQGTTFSFTL 707


>gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 523

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 139/362 (38%), Gaps = 13/362 (3%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +     I+  ++GV +     RI   N     L        + G     +    + +
Sbjct: 165 REKQHLNALIEQSADGVMIIDGRWRITTFNHTMEQLTGWSREE-AIGRPCAEVLGIRNAH 223

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                  +          +       T     D  ++    P   +   L          
Sbjct: 224 GVNICLNECPLQRRPDLANPVVEGWITTRDGRDLFIQNRYAPQRGSHGQLLSAIANVRDI 283

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             + +          +E +N+F+  +S+ELR+P++ I GF + +          +  + +
Sbjct: 284 TAQKME---------EERQNTFISVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREAL 334

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + IS  +  L   + D+LD++ + AG ++L  S + L+ L+++V +  A ++ E  I  +
Sbjct: 335 QVISEEADRLARQIQDLLDVSRIAAGGLRLERSDVALHLLVSDVVRRFAAQVGER-IEFE 393

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +     L    AD +R+ Q+ + ++ NA+ +S  G  + + A  +    I  V + G  I
Sbjct: 394 IRVPDDLPPVYADYERMRQVLTNLIENAVKYSPNGGVIRIGARAEGDMAIVYVSDQGIGI 453

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +    +F RF       R  + G GLGL I  + +  HGG + + S     +     I
Sbjct: 454 PPEEQDLIFERFYRVDTRLRRDQPGSGLGLFITRAIVEAHGGRIWVESQVGRGSRFFFTI 513

Query: 789 PS 790
           P 
Sbjct: 514 PL 515



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 288 EAGIAIDVSKEIT-VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           +A IA+  ++    V  +  H   ++      + I D    +   N +  +L        
Sbjct: 149 QAAIAVGNARLFQSVLREKQHLNALIEQSADGVMIIDGRWRITTFNHTMEQLTGWSREEA 208

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVT 405
              P  + L   +R+A+     +N    +  +      +    + W    +G+ L +   
Sbjct: 209 IGRPCAEVLG--IRNAH----GVNICLNECPLQRRPDLANPVVEGWITTRDGRDLFIQNR 262

Query: 406 SNPRGGT-------IWMFENLTVQVDLETKYNTLVKV 435
             P+ G+       I    ++T Q   E + NT + V
Sbjct: 263 YAPQRGSHGQLLSAIANVRDITAQKMEEERQNTFISV 299


>gi|229051134|ref|ZP_04194678.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
 gi|228722197|gb|EEL73598.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
          Length = 613

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 YRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|150008613|ref|YP_001303356.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937037|gb|ABR43734.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 768

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 164/381 (43%), Gaps = 23/381 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   +       +     ++   +  A        + SN  F       ++   P   
Sbjct: 393 SHKKQAQESLRKEKEFLSLALES-GDIFA-------FRYSNGVFEFDHDFYKSLDMPIKP 444

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
           I +     S +  + + +     ++ +    RK  +             E+      N Q
Sbjct: 445 ITSTQFQESIHPEDREDFIQHKHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYAQAKNGQ 504

Query: 538 --------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                        +N+  S   E  L +      +AD++K++F+ ++S+E+R+PL  I+G
Sbjct: 505 DSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVG 564

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++LL +    S N +  ++++ IS +S +LL L+NDILDL+ + +G M    +   LN+
Sbjct: 565 FSELLTSDMEISPNER-DEFMQVISKNSDLLLKLINDILDLSRIKSGKMSFTLTNCDLNE 623

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
           LL+ + ++    M +  + +K+          AD  RL Q+ + +++NA  F+++G   +
Sbjct: 624 LLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFTTQGYILI 682

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                +D      SV + G  IP D    VF RF       Q  G GLGL+I +  I   
Sbjct: 683 KYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLDEFAQ--GTGLGLAICQIIIEHF 740

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG++++ S +   +T    +P
Sbjct: 741 GGYITLESKEGEGSTFIVTLP 761


>gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
 gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
          Length = 925

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+   L+ +Q  Y+  I
Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSE---LSPRQQDYLSTI 325

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L      L DL+ +    +A   HE  + +  ++
Sbjct: 326 QKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLV 385

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNG 727
                     D QRL QI + ++ NA+ F+ +G TV ++A     + D      SV++ G
Sbjct: 386 YRDTPVQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISVQDTG 444

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + ED  +++F  F    +    Q  G GLGL I +  I   GG + + S+        
Sbjct: 445 IGLSEDDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFW 504

Query: 786 CRI 788
             +
Sbjct: 505 ISL 507


>gi|77359688|ref|YP_339263.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874599|emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125]
          Length = 918

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 23/298 (7%)

Query: 512 KSLQGTLELLSDSV--LEYSIIPLPNAQTMLTFVNVTDSVRAERA-------LTEKNEAL 562
           +S+ G  ELL + +  + YS++   +          +D              LT   +  
Sbjct: 224 ESMIGEFELLREGLNTISYSMVMQKDEMQKNIDQATSDYRETLEQYETQNIQLTMAKKEA 283

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+ +K+ F+  +S+ELR+PL  +IGFT  L  +    LN  Q  Y++ I  S+  L+ 
Sbjct: 284 QDANRVKSDFLAKMSHELRTPLNGVIGFTRQLHKT---PLNKNQKDYLDTIELSANSLMT 340

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           +++DILD + ++AG M+L      L D +NEV   +A   H+  + + +    ++     
Sbjct: 341 IISDILDFSKLEAGAMELESIQFQLRDTVNEVMTLLAPSAHDKQLELSIYISPQVPDHLT 400

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKS 737
            D  RL Q+   +LSNA+ F+ KG+  V +     + +    + SV + G  IP D   +
Sbjct: 401 GDPTRLKQVLINLLSNAIKFTEKGAIKVDISHRLLDDERTSILVSVADTGVGIPVDKQDA 460

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN----CRIP 789
           +F  F        R   G GLGL I +  +    G ++++S+    T        R+P
Sbjct: 461 LFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGKITLNSAPGNGTCFTFNGVFRLP 518


>gi|186682272|ref|YP_001865468.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464724|gb|ACC80525.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 713

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 164/399 (41%), Gaps = 37/399 (9%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENR 473
           + + +  +  +        +      + + + V     +G     N  +        E  
Sbjct: 178 LQQEILERQRILEVLRQSEERYRYLAEAIPQLVWTTNANGECDFFNQNWCEYTGLTLEQS 237

Query: 474 LSPG----THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           L  G     H  +I      + N            T++++E +      +  SD    + 
Sbjct: 238 LGSGWLAALHPDDIQNADQIWSNAVKNS-------TTYNNEYR-----FKRASDGSYRWQ 285

Query: 530 I---IPLPNAQTMLTFVN--VTDSVRAERALTEKNEALR----------KADEIKNSFVQ 574
           +   +PL + Q ++       TD    ++ L E+   L            A+ IK+ F+ 
Sbjct: 286 LARGLPLKDEQGIVVKWFGTCTDIHEQKQILEERAHLLELEQIARAKAETANRIKDEFLA 345

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+ELR+PL  I+G++ LL++ +L     K SQ +  I  ++ + + L+ D+LD++ + 
Sbjct: 346 ILSHELRTPLNAILGWSKLLQSRRLDQ--EKTSQALATIEKNANLQVQLIEDLLDISRIL 403

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            G + L+ + I L   +    +++        I +  + +  +G  + D  RL Q+   +
Sbjct: 404 QGKLTLDITKINLKSTILSALETMRLAAETKLIEVSTVFEPNVGQVMGDSTRLQQVVWNL 463

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           LSNA+ F+ KG  + ++  + +G     V + G  I  +    VF+ F        R   
Sbjct: 464 LSNALKFTPKGGKIEVRLEQADGYAQIIVSDTGKGISPEFLPFVFDYFRQADSTSTRNFG 523

Query: 753 GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
           G+GLGL+IV + + +HGG V   S  ++        +P 
Sbjct: 524 GLGLGLAIVRNIVEIHGGIVKAKSEGEDKGAIFTVSLPL 562



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E     + L      ++ L +++  LVW  +  G+  + N ++    E  G+  
Sbjct: 178 LQQEILERQRILEVLRQSEERYRYLAEAIPQLVWTTNANGECDFFNQNW---CEYTGLTL 234

Query: 234 QKAIGES--RKLFKEEIKKRMISSSALEKNFCE-----TVSTLEHGNNKSYKIVRVLNSF 286
           ++++G      L  ++I+      S   KN               G+ +  ++ R L   
Sbjct: 235 EQSLGSGWLAALHPDDIQNADQIWSNAVKNSTTYNNEYRFKRASDGSYRW-QLARGLPLK 293

Query: 287 GEAGIAI-------DVSKEITVNDQLTHTYEILHNLTVAIA 320
            E GI +       D+ ++  + ++  H  E L  +  A A
Sbjct: 294 DEQGIVVKWFGTCTDIHEQKQILEERAHLLE-LEQIARAKA 333


>gi|254412809|ref|ZP_05026582.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180544|gb|EDX75535.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 622

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 154/382 (40%), Gaps = 11/382 (2%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
                 ++T +   E             ID    G  V    G +  +N  +  +     
Sbjct: 248 MAGSISDITDRKRAEEALQQSEAKYRALIDTTQTGYVVLDRQGIVLDANQEYVRVTGQSN 307

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWD-LFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                G  + +  A      N ++    L    + + + +     GT+  +    +   +
Sbjct: 308 VSDILGKPVLDWIAPYDLERNVAEIQKALVERSVQNLETDYCHANGTIIPIE---INARV 364

Query: 531 IPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I      + +    ++T+  +A + L      L ++++    F    S++LR PL  I  
Sbjct: 365 IDTDEGCRILALCRDITERKQARQELKAAIADLARSNQDLEQFAYVASHDLREPLRKIRS 424

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           ++DLL     G L+ +  +Y+ YI+ ++  + +L++D+L  + V     +L      L  
Sbjct: 425 YSDLLVKRYRGKLDERADKYIAYITDATQRMQSLISDLLTYSRV--SKPELIPEPTDLGH 482

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTV 708
           +L +    ++  + EN     +I+   L    A+  ++ Q+   +++N + F + +   +
Sbjct: 483 ILKKTLADLSPLIKENK---AIITTDSLPQVNANPTQMAQLLQNLITNGIKFRTQQPPRI 539

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            + A R+   +  +V++NG  +    C  +F  F    +R +  G G+GL++ +  +  H
Sbjct: 540 HITATREGQFWQIAVQDNGIGMDTQYCDRIFVIFQRLHYREEYPGTGIGLAVSKKIVERH 599

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + + S     TT    +P+
Sbjct: 600 GGQIWVESELGQGTTFYFTLPA 621



 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 54/178 (30%), Gaps = 19/178 (10%)

Query: 288 EAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID- 342
            AG   D++      + L         ++        + D+   +   N+ +V +     
Sbjct: 248 MAGSISDITDRKRAEEALQQSEAKYRALIDTTQTGYVVLDRQGIVLDANQEYVRVTGQSN 307

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           ++ +   P  D +          P  L     +     V +S +  +  +   NG  + +
Sbjct: 308 VSDILGKPVLDWIA---------PYDLERNVAEIQKALVERSVQNLETDYCHANGTIIPI 358

Query: 403 IVTS----NPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            + +       G  I  +  ++T +     +    +     +   L +   V   D R
Sbjct: 359 EINARVIDTDEGCRILALCRDITERKQARQELKAAIADLARSNQDLEQFAYVASHDLR 416


>gi|242278944|ref|YP_002991073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121838|gb|ACS79534.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 659

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/538 (18%), Positives = 212/538 (39%), Gaps = 70/538 (13%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           +   +E+   L   I  F  +  L + N+++ + +  +   L       + LEFL     
Sbjct: 4   MNKHHELGELLPAMICEFLPDSTLTYVNKAYCDYFGKNEKELVG----YKFLEFLPEDVV 59

Query: 365 LPEQLNWKTW------KENIFSVYKSSETHKDTWHLP-----NGQTLHVIVTSNPRGGTI 413
              +  +           ++  V ++ E     W        NGQ +             
Sbjct: 60  DAVKSRYLNLTPDNPVHTHVHEVVRNGEICWHEWTNRAFFNENGQAVRFQAVG------- 112

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA--VFGPDGRIKLSNPAFRSLWKTEE 471
              ++ + +  +E    + + ++  + +H  + +   V     R+     AF    ++E+
Sbjct: 113 ---QDTSERKLMEQLLKSRLMLREYSTEHSVDVIIGRVLEEIKRLTCCEYAFFHFVESED 169

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS--------FDDERKSLQGTLELLSD 523
             L     ++  +    +Y  E     LFA   T         ++ E K      +L  D
Sbjct: 170 FLLDVSEQVKLNSCLQQKYEGEIFNSYLFANWCTECYSKCCSIYNVEIKDSSFNNDLQHD 229

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVR-------------------------AERALTEK 558
            +    + P+     +   + +    R                            AL + 
Sbjct: 230 YMQYVLVTPVMYQGEVFAVLALCKQDRTFSKKDTEVVNQLATTAVDAVVHKIMSDALLKS 289

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E    A ++K+ F+ ++S+E+R+P+  I+G   LLKT+    L+++Q +YV+Y   SS+
Sbjct: 290 KEQAEAASKVKSEFLANMSHEIRTPINGIMGMLQLLKTT---DLDAEQLEYVDYALKSSS 346

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L +L+ DILDL  V+AG ++L  +   + + ++ ++Q    +  E  + +      ++ 
Sbjct: 347 RLSSLLIDILDLTMVEAGQLELQIAPFEIAETIDSIRQLFGQEAREKGLVLNFDISPEVP 406

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDM 734
            +   D  RL Q+   ++ NA+ F+  G  V ++   ++      +F V++ G  I +D+
Sbjct: 407 ETVDGDALRLQQVLVNLVGNALKFTEHG-RVDVEVFLNDKRAKSLLFKVRDTGIGIADDI 465

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F  F+          +G GLGLSI +  + + GG + +SS     T  +  +P 
Sbjct: 466 QDKLFEPFIQGDGSYKRSFQGAGLGLSICKRVLKVMGGEIYVSSVLGKGTVFSFTMPL 523


>gi|91201123|emb|CAJ74182.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1110

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 161/405 (39%), Gaps = 37/405 (9%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS----- 475
            +  L       +      +D   + +     +G I   +     +   +E+ +      
Sbjct: 263 EKYKLLHDLEASLMYFQGMLDDSGDIIITTDCEGNIVKFSKGGEKILGYKEHEIRGKKCS 322

Query: 476 ----PGTHIRNIAATCSR----------YYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                     NI                   + +     +  I+   D+  ++ GT+ + 
Sbjct: 323 ELYVNKGERTNILEALRGKSSLSNYETTLLKKDNTPVDISLTISELRDKTGNVIGTVGIS 382

Query: 522 SDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVS 577
            D   E  +        + +    N  +    ER  AL + N  L +A+E+K  F+ + S
Sbjct: 383 KDITEEKRMKGELEKKNKELEELTNNLEEKVLERTNALEKMNRELVRANELKGRFIANAS 442

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL +IIGF+++L     G L  KQ +Y+  I  S+  LL LVN+ILDLA +DAG 
Sbjct: 443 HELRTPLHSIIGFSEILLQKTFGDLTEKQQRYLNTIFGSAKHLLYLVNNILDLAKIDAGK 502

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +++Y T  +  +++EV   I        I  + +    +  F AD+ +  QI   ++SN
Sbjct: 503 AEISYQTFPVKSVIDEVLVVIRPLADRKMIVPETVVHHDV-YFTADKIKFKQILYNLISN 561

Query: 698 AMDFSSKGSTVILK-------------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           A+ F++    V +                        SV + G  I  +  + +F  F  
Sbjct: 562 AIKFTADSGNVGIAIEKIISDKKTFPWVTESQEFLKVSVWDTGIGIKPEDRERIFEEFEQ 621

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   G GLGLS+ +  + +HGGH+++       +  N  +P
Sbjct: 622 IDSSKSTEGTGLGLSLTKKLVEIHGGHITVEGIYGQGSVFNVYMP 666


>gi|78778120|ref|YP_394435.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498660|gb|ABB45200.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 697

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 167/379 (44%), Gaps = 20/379 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSP 476
           LT    L  +++    +  +    +     V      G I  +N  F  +     + L  
Sbjct: 327 LTSTNKLNEEFSNSKSLLEQYKSSVDRSFIVSKTDKKGVITYANDEFCKISGYSRDELIG 386

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVLEYSIIP 532
            +H  NI        +      +F  +  +  D+++   G ++ L    S    +  I P
Sbjct: 387 KSH--NIIR------HPDTEMAIFKELWHTIRDKKEPWFGEIKNLKKDKSSYWTKAVINP 438

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + ++   +       +   E  L     A   A++ K++F+  +S+ELR+PL  +IGF+ 
Sbjct: 439 ILDSNQNIIEYIGIRTDITE--LENAMIAALSAEKAKSTFLATMSHELRTPLNAVIGFSQ 496

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  +K      K   +VE I+ S   LLNLVN+ILD + +++G M LN   I+L + +N
Sbjct: 497 ILM-AKDDMPKEKIRTFVEKINISGKHLLNLVNNILDFSKIESGRMNLNKREILLENFIN 555

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E    +  +  + +I I      ++ S  AD Q L Q+   ILSNA+ FS++ S + +  
Sbjct: 556 ETILLVENEALKKDIEIIKKGFFEI-SLSADEQLLKQVILNILSNAIKFSNQNSAINISY 614

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGG 770
             D  + I S+ + G  + ++  + +F  F  V        +G GLGL I +  + LH G
Sbjct: 615 KNDEENHIISICDEGVGLSQEQLEKLFKPFSQVQEHQNTALKGTGLGLVISQKIVELHNG 674

Query: 771 HVSISSSDEGVTTINCRIP 789
           ++ + +     +     IP
Sbjct: 675 NIEVKTQSGKGSCFYISIP 693


>gi|332982065|ref|YP_004463506.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699743|gb|AEE96684.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 479

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 116/248 (46%), Gaps = 2/248 (0%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +  +  +   +  +  EAL   ++++  FV  VS+EL+SPLT+I GF   +    + 
Sbjct: 230 TVSSKDEVGQLATSFNKMAEALENLEDMRRGFVSSVSHELKSPLTSIRGFVQGILDGTIP 289

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q+QY+  +   +  L  ++ ++L+L+ +++   +L  S   +N+L+  V      
Sbjct: 290 --TEEQTQYLTIVLEETDRLNKIIKELLELSRMESSQFQLAMSNFDVNELIRRVLLKQEK 347

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           ++ +  + +++  +       AD+ R+ ++   ++ NA+ F+ +   +I+    +     
Sbjct: 348 RIEQKELDVQIDFEQDRCMVEADKDRIEEVLINLIDNAIKFTPEKGRLIVSTRVEGNKVY 407

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV ++G  I E+    ++ RF +          GLGLSIV+  I  H   + + S    
Sbjct: 408 ISVSDSGIGISEEDMPHIWERFYTADKSRASGSTGLGLSIVKRIIEQHRQSIWVKSIPGK 467

Query: 781 VTTINCRI 788
            TT    +
Sbjct: 468 GTTFTFTL 475


>gi|283852829|ref|ZP_06370092.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571821|gb|EFC19818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 674

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/499 (17%), Positives = 178/499 (35%), Gaps = 23/499 (4%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              ++  L     +   +      N +F  L       +    +         SA+    
Sbjct: 38  LERVVGTLADPFYVKGPDGRFLLVNDAFCILAGRSRPDILGRNAATVFPGRFGSASL--- 94

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
           + +          + + S    D  H        + V    R   + +  ++T + +   
Sbjct: 95  KNDAMVLVCGFEDIAEESAVDADGRHRTFMTRKTLHVDGLGRRHVVGIIRDITARKEAAR 154

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                       ++  +EG+       R    N    ++   +   +   +    +    
Sbjct: 155 ALAQSEVRYRRIVETANEGIWAVDARWRTTYVNAVMAAMLGCDAPGMIGRSASEFLFPED 214

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
              +      ++       ++   K   G       +V            ++  F N+TD
Sbjct: 215 RELHRAMLRREVLPPGGGVYERRLKRQDGREIWTIIAVSSEFDASGRFLGSVGMFTNITD 274

Query: 548 SVRAERALT-------EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +AE AL           EA   A++ K+ F+ ++S+E+R+PL  ++G   +++ +   
Sbjct: 275 RKQAEEALRLSEARLAAAKEAAEAANKSKSEFLANMSHEIRTPLNGLLGMLQIVEDT--- 331

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+  Q   V         L  L+ DILDL+ V++G + L      L ++   ++   A 
Sbjct: 332 ALDGDQRDCVVTALDCGRRLTRLLTDILDLSRVESGKLVLVADPFSLREVFASIQTVFAV 391

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------A 713
            + +  + ++      + +  + D  R+ QI   ++ NA+ F+  G T+ L+A       
Sbjct: 392 TLDQRGLALETAIHPDVPALLLGDEGRIRQILLNLVGNAVKFTRSG-TITLEAGWHPADE 450

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                   +V + G  IP D   +VF  F        R  +G GLGLSIV+  + L GG 
Sbjct: 451 TGGRRLALAVGDTGIGIPHDKHDTVFETFTQVDASNTRIHQGAGLGLSIVDRLVRLMGGT 510

Query: 772 VSISSSDEGVTTINCRIPS 790
           V + S     T + C +P 
Sbjct: 511 VLLDSEPGIGTMVMCLLPL 529



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 53/151 (35%), Gaps = 17/151 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI--SYKKNT 226
             + GI  ++       + L+     ++ + ++ +  +W  D      + N   +     
Sbjct: 137 RHVVGIIRDITARKEAARALAQSEVRYRRIVETANEGIWAVDARWRTTYVNAVMAAMLGC 196

Query: 227 ETEGIVFQKA----IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           +  G++ + A      E R+L +  +++ +           E     + G  + + I+ V
Sbjct: 197 DAPGMIGRSASEFLFPEDRELHRAMLRREV---LPPGGGVYERRLKRQDG-REIWTIIAV 252

Query: 283 LNSF-------GEAGIAIDVSKEITVNDQLT 306
            + F       G  G+  +++      + L 
Sbjct: 253 SSEFDASGRFLGSVGMFTNITDRKQAEEALR 283


>gi|283851415|ref|ZP_06368696.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573153|gb|EFC21132.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 773

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 157/396 (39%), Gaps = 34/396 (8%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAV----FGPDGR-----IKLSNPAFRSLWKTEE 471
            Q                  + + +G+ V    +   GR     I   NP + ++     
Sbjct: 226 EQKKATEALRENETSLRALYESMDQGLCVHELVYDEAGRPANYRILEVNPKYEAILGLTR 285

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-------S 524
              + G    ++       + +S            F+     L     + +        +
Sbjct: 286 QE-AVGALATSLYRVDRPPFLDSYARVAQTGEPAFFETYFAPLGRYFSISAFCPRPGKFA 344

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELR 581
           VL   I    NA+  L  +N T   R       L    EA   A+  K+ F+ ++S+E+R
Sbjct: 345 VLFKDITTRRNAEEELKRLNETLEQRVLEQTGELRSAKEAAEAANRAKSQFLANMSHEIR 404

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+G T+L   + L  +  +  +Y+  +  S   LL+++NDILDL+ +++G   L+
Sbjct: 405 TPMNGILGMTEL---TLLMDMPPQAGEYLRLVLQSGHALLDIINDILDLSKIESGHAVLD 461

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                L++ L     ++A    E  + +    D  +    V D+ RL Q+   I+ NA+ 
Sbjct: 462 NKPFRLHECLGSTFNALAITAREKGLSLYHCIDSHVPEHIVGDQGRLRQVLINIVGNAIK 521

Query: 701 FSSKGSTVILKAARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQR 751
           F+ KG  V +   RD           +F V ++G  IP+D    VF+ F     +   + 
Sbjct: 522 FTPKGG-VRVTVGRDGQPAPPGSARLLFQVADDGIGIPKDGLGEVFHAFSQIGLSSHTRF 580

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            G GLGLSI +S + + GG +   S     +  +  
Sbjct: 581 GGTGLGLSISKSLVAMMGGRIWAESKLGQGSLFSFT 616



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 92/298 (30%), Gaps = 53/298 (17%)

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
            I WAN    +      +   + +     L   ++      ++         +  +  G 
Sbjct: 125 QISWANDGKGQGPTGRAVRSGEPVACRNMLSDPKLLLWRKEAARRGYASSIALPLVVRGE 184

Query: 274 NK-----------SYK------IVRVLNSFGEAGIAIDVSKE-----ITVNDQLTHTYEI 311
                        +++      +V + N+      A+ V  E       + +  T    +
Sbjct: 185 VTSVLMIYAGEAEAFEGDEFNLLVELANALTFGIDALRVRAEQKKATEALRENETSLRAL 244

Query: 312 LHNLTVAIAI----FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP- 366
             ++   + +    +D+         +   +       L  NP  + +L   R       
Sbjct: 245 YESMDQGLCVHELVYDEAGR-----PANYRI-------LEVNPKYEAILGLTRQEAVGAL 292

Query: 367 ----EQLNWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
                +++   + ++   V ++ E    +T+  P G+   +       G    +F+++T 
Sbjct: 293 ATSLYRVDRPPFLDSYARVAQTGEPAFFETYFAPLGRYFSISAFCPRPGKFAVLFKDITT 352

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + + E +   L +   +          V    G ++ +  A  +  + +   L+  +H
Sbjct: 353 RRNAEEELKRLNETLEQR---------VLEQTGELRSAKEAAEAANRAKSQFLANMSH 401


>gi|67925200|ref|ZP_00518568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67852959|gb|EAM48350.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 840

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 139/277 (50%), Gaps = 10/277 (3%)

Query: 523 DSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           D V ++   PL   +     ++    +VT   +  + L  KN  L + + +K+ F+  +S
Sbjct: 291 DKVWQFIKCPLTTDKLEAPISIFVATDVTQQQQLCQELAAKNADLVQLNRLKDEFLACIS 350

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL+SPLT ++G + LL+  K+G+LNS+Q  Y + I  S   L+ LVND+LDL  ++ G 
Sbjct: 351 HELKSPLTAVVGLSSLLQEEKIGNLNSRQVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQ 410

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +KL+++ + + ++      SI  K     E  +   +  + +L   +AD  RL Q+   +
Sbjct: 411 LKLSFNPVNIREICQRAYHSITEKYQSKTEKPVDFSLEIEPELEHLLADELRLHQMLVHL 470

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRR 752
           L NAM F+  G  + LK +R +    F+V + G  IPE+    +F +F    +    Q  
Sbjct: 471 LDNAMKFTQTGGKIGLKVSRWSDWLAFNVWDTGIGIPEESQHLIFQKFQQLENPLTRQFE 530

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL + +     HGG +S  S     +     +P
Sbjct: 531 GTGLGLVLTQRLARAHGGDISFVSKAGQGSQFTLLLP 567


>gi|18310739|ref|NP_562673.1| sensory box histidine kinase [Clostridium perfringens str. 13]
 gi|18145420|dbj|BAB81463.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 571

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 161/382 (42%), Gaps = 43/382 (11%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +  Q+++   ++          +  +  GV  F  D  + + NP  + ++      +
Sbjct: 222 FNYMAEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEII 281

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPL 533
                            N+   +     ++ +F DE+  ++  +    D  +L+     +
Sbjct: 282 G----------------NKLLDYITDKEVLKAFFDEKDRVEIEVNYNDDPKILKIRKASI 325

Query: 534 PNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            N      T++   ++TD  + E               +++ FV ++S+EL++PLT+I G
Sbjct: 326 INEPEIIGTVVVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKG 371

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F + L+       +  +++++  I   S  L  L+ DIL L  ++     +      +++
Sbjct: 372 FAETLR---YVEDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTI-LEEFNVDE 427

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + +V   +  +  +  + I + ++      + D+ +  Q+   ++SN++ ++ KG  V 
Sbjct: 428 EIEKVYMLLNDQAKKKGVEIFLDTNSN-CVLMGDKDKFKQMLLNLVSNSVKYTEKGGKVR 486

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +++   + + I  +++NG  I  +    +F RF         +  G GLGL+IV+  + L
Sbjct: 487 VESYNRDMNLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRL 546

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
             G ++++S     T I   IP
Sbjct: 547 FDGEINVTSELGVGTKIVITIP 568



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           +     +   ++S+    NF + V      +    +I R+  SF      ++++ E   +
Sbjct: 183 ILNPLKELEQLTSTIASGNFHKRVKINSKDD----EIQRLGKSFNYMAEQLEITMERFKD 238

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            Q      IL ++   +  FD++  +   N    +++ I    +        LL+++   
Sbjct: 239 KQ-NGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNK-----LLDYITDK 292

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWMFEN 418
             L    +            +      +  +  + + L +    I+      GT+ + ++
Sbjct: 293 EVLKAFFD------------EKDRVEIEVNYNDDPKILKIRKASIINEPEIIGTVVVIQD 340

Query: 419 LTVQVDLE 426
           +T    LE
Sbjct: 341 ITDIKKLE 348


>gi|312890874|ref|ZP_07750403.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311296657|gb|EFQ73797.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 510

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 10/254 (3%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              +  +   E  L    +   KA   K+ F+  +S+E+R+P+  +IGFT LL      S
Sbjct: 108 HQQIDKAKELETQLILSKDIAVKAALTKSQFLSTMSHEIRTPMNAVIGFTHLLLQL---S 164

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +Q +Y++ +  S+  LL L+NDILD + ++AG ++   +   + DL++ ++ ++  K
Sbjct: 165 PRPEQMEYLKLLKFSAENLLVLINDILDFSKIEAGRVEFEEADFSIKDLVSNIRLALLQK 224

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNG 717
            +E NI++K++ D  L   V  D  R+ QI + ++SNA+ F+ +G   I+ +     D+ 
Sbjct: 225 ANEKNIQLKLLMDHDLPDVVKGDPVRIGQILTNLISNAVKFTKEGKVTIVASLHKKYDDY 284

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
             + F V + G  I  +    +F+ F   A    R   G GLGL+I +  + L    + +
Sbjct: 285 TIVDFEVIDTGIGIAANKLDDIFDSFTQAASDTTRKFGGTGLGLTITKRLLELMNSEIKV 344

Query: 775 SSSDEGVTTINCRI 788
            S     +     +
Sbjct: 345 KSEPGKGSVFYFSL 358


>gi|307319436|ref|ZP_07598863.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306894808|gb|EFN25567.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 531

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 97/376 (25%), Positives = 163/376 (43%), Gaps = 29/376 (7%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY---YNESDGWDLF 500
           ++G   F P   +   N A+           + G  +       S Y     +  G    
Sbjct: 95  TDGEVEFAPAPELPDLNAAYDLFAGLVTVHDTRGHVLSVHGRDASEYLKLMRDPHGRGFI 154

Query: 501 AAIITS-------------FDDERKSLQGTLELLSD-----SVLEYSIIPLPNAQT---- 538
             I  S              D ER ++   LE  S      + +   + PL +A+     
Sbjct: 155 EQIHVSDRIAFLRAIDSLRLDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLA 214

Query: 539 -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    +V++  R +     K      A++ K  F+  VS+ELR+PL  I+GF+D+L   
Sbjct: 215 IVAQSRDVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGE 274

Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G L N +Q +YV  I  S T LL++VN +LD++ ++AG  +L      + + +   + 
Sbjct: 275 YFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEA 334

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            ++ +  E  +R+       +G   AD++   QI   ++ NA+ F+ +G  V + AA + 
Sbjct: 335 MLSHQAREKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEG 394

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V + G  I  D  + +   FV   N +  +  G GLGLS+V+    LHGG VSI
Sbjct: 395 NMLKLTVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSI 454

Query: 775 SSSDEGVTTINCRIPS 790
            S++   T I   IPS
Sbjct: 455 RSAEGEGTVIVVTIPS 470


>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 945

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/521 (20%), Positives = 198/521 (38%), Gaps = 38/521 (7%)

Query: 282 VLNSFGEAGIA------IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
           VL + G AG A      I  S E     +         ++  A A+ D    +Q    +F
Sbjct: 3   VLITIGMAGFATFRLIEIRQSIEQATQARALAVSRTF-SMVGAAAVLDNLFRIQ---EAF 58

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
              +  D   L+    +    + +  A   P Q+  +   E +   ++++          
Sbjct: 59  GR-YAQDSDILSILIIDP---DNMIVAATNPRQIGQQLTDETLAQAHETNAETISHGQTV 114

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +G    ++ T       I  +  +   +    +  T        +  L  G  +      
Sbjct: 115 DGVPTLLVATPLLNEQDIAAWVRIEFSLAAMQEELTREARHLFLLSVLFMGATISVAQLG 174

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           I+  +  FR   +  +  L     +   A +     +  +                 S +
Sbjct: 175 IRRMSGLFRETAEKLQKTLHTLHCVSEQAPSGDAASDHDNSHA------------SPSCK 222

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFV 573
           G LE + D V   + +    AQ + +F +  +    ER   L +  EA   A+  K+ F+
Sbjct: 223 GDLEQVVDLVETTTTLLTTQAQRLQSFTDSLEQAVRERTTELHQAKEAAEAANRAKSQFL 282

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  ++G T+LL ++   +L  KQ    E +  S T L++++N+ILD + +
Sbjct: 283 ANMSHEIRTPMNGVLGMTELLLST---ALTQKQRSLTETLHRSGTGLMDIINEILDFSKI 339

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           +AG +KL      L   + +     A      ++ +       +  + + D  RL QI  
Sbjct: 340 EAGKLKLERIEFGLRQTVEDAVDLFAETAGRKHLELTCFVPPDIPDTVIGDPVRLRQILL 399

Query: 693 KILSNAMDFSSKGST-VILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            ++ NA+ F+  G   V L+       N    F +++ G  IPE     +F  F    + 
Sbjct: 400 NLVGNAIKFTQSGDVAVTLELVTPTTTNLTLKFRIRDTGVGIPEATQARLFQAFSQADNS 459

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             R   G GLGL+IV+    L GG V + S     +T    
Sbjct: 460 TTRKFGGTGLGLAIVKQLALLMGGDVGVDSVSGQGSTFWFT 500


>gi|261854763|ref|YP_003262046.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
 gi|261835232|gb|ACX94999.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
          Length = 858

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 5/251 (1%)

Query: 545 VTDSVRAERALTEK---NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +  +   E+AL       +    A++ K+ FV ++S+ELR+PL  IIG++++L       
Sbjct: 311 MQRTEELEQALKIAGEARKEAEDANQTKSQFVANMSHELRTPLNAIIGYSEILLEESEDD 370

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N++ +  +E I  S   LL LVNDILD++ ++AG M+L   +  +   +  V  +    
Sbjct: 371 GNTQYAPDLERILNSGKHLLALVNDILDISRIEAGKMELYLESFPICREIQTVIDTARPV 430

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           + +N   +    D  LG    D  +  QI   ++SNA  F+  G+  +     D   F  
Sbjct: 431 IDKNQNSLVFECDDSLGHMRGDLTKFRQILLNLISNAAKFTQVGTLTLSVRREDTDHFTI 490

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  + E+    +F  F        R   G GLGLSI   F  + GG ++ +S+  
Sbjct: 491 AVADTGIGMNEEQLGRLFQVFSQADASTTRKYGGSGLGLSISRHFARMMGGDITATSTPG 550

Query: 780 GVTTINCRIPS 790
             +     +P 
Sbjct: 551 SGSVFTVSLPL 561


>gi|301162515|emb|CBW22061.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 870

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/520 (19%), Positives = 205/520 (39%), Gaps = 56/520 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +  Q      + H++   +  +D +  + F NRS +++  +               E
Sbjct: 375 QNRLVAQRDEFDNVFHSIRDGVITYDTDFRIHFTNRSLLKMLHLPKD------------E 422

Query: 358 FLRSANKLPEQLNWKTW---KENIFSVYKSSETHKDTWHLP---------NGQTLHVIVT 405
             R    LP    +K +   KE +  + K   T + +  +P         +G    V   
Sbjct: 423 AARPYEGLPAGSIFKIYNNGKEILRPMLKQVVTEESSVVIPENSFMQEVHSGSYFPVSGE 482

Query: 406 SNPRG------GTIWMFENLTVQVDLETKYNTLVKVQGETID---HLSEGVAVFGPDGRI 456
             P        G      N++ + +++ ++ ++   +        ++  G+  F P G +
Sbjct: 483 VVPIRAHGKITGMALSARNISDE-EMQKRFFSMAVDESSIYPWQYNIRTGLFTF-PAGFL 540

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
                        E   +     +  +     +           A +  S     + L G
Sbjct: 541 T-------RFGFAENKTIISRGEMDRMIHPDDQESAYEIFNRALAGLSQSTRMSFRQLSG 593

Query: 517 TLELLSDSVLEYSIIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                +    EY    L           +    ++      E  LT   +   +AD++K+
Sbjct: 594 D---GNYEWWEYRTSVLAGLTTDTPYSILGVCQSIQRYKTTEEELTAARDKALQADKLKS 650

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+E+R+PL  I+GF+DLL  +  G    +   ++E I+ +  +LL L+NDILDL
Sbjct: 651 AFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIETINKNCGLLLALINDILDL 709

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQ 689
           + +++G M   ++   L  L+  V  S    M    +++ +          V D  RL Q
Sbjct: 710 SRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPP-GVQLVLKLPENSKKYLVTDNVRLQQ 768

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + + +++NA+ F+++GS        + G     V++ G  I ED  + +F RF       
Sbjct: 769 VVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGISEDGLRHIFERFYKVDSFT 828

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           Q  G GLGLSI ++ +    G ++++S +   T    R+P
Sbjct: 829 Q--GAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866


>gi|226947567|ref|YP_002802658.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226842367|gb|ACO85033.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 615

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 172/391 (43%), Gaps = 16/391 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + +  N   Q +++ +    + ++ E      I +  + + V    G+I  +N   + + 
Sbjct: 198 VNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILV-HRYGKIIFANERLKQML 256

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLF---AAIITSFDDERKSLQGTLELLSDS 524
              +        I+++         ++   +L+     ++    +   + + T++  S  
Sbjct: 257 GYRKEYNFEDIDIKSLIPKDEYNTVKNKLENLYYGSENVVNFQHNVINNKEKTIQNTSTY 316

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELR 581
           V+ Y  +P   +  +    +     + E+ + +  E L +    +++   F+ ++S+EL+
Sbjct: 317 VI-YDGMPTIFS-ILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHELK 374

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I     LL   +      KQ +Y++ I  +   L+ L+N++LD   +D+G +KLN
Sbjct: 375 TPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLN 434

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                + +L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSN++ F
Sbjct: 435 LVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKF 494

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           ++ G  + +       +    VK+ G  IP D  +S+F RF          + G G+GL 
Sbjct: 495 TNAGGNIFVNVKDCGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLH 554

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +V+SF+ +H G V+I S     T    ++P+
Sbjct: 555 LVKSFVEMHNGTVTIKSELGQGTEFIIKLPA 585


>gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1603

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              +  + E+     NE L++ D++K+ F+ + S+ELR+PL  IIG ++ L   +   L+ 
Sbjct: 881  QQEREQLEKE-RRMNERLQQVDKLKDQFLANTSHELRTPLQGIIGLSEALLEDE---LDP 936

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            ++   +  + +S   L +LVNDILD + +    ++L+   I L+ + + V ++I+  +  
Sbjct: 937  ERKANLTMVVSSGKRLNSLVNDILDFSKLKNADIELDLRPISLHSMADVVLKNISPLVAG 996

Query: 665  NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +I +         +  AD  RL QI   +L NA+ F+  G  + + A   + D +  V+
Sbjct: 997  KSIELLNSVSVDFPAASADENRLQQILYNLLGNAVKFTESG-YIKIDALERDNDLVVCVE 1055

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  IP D   ++F  F        R   G GLGLSI +  + LHGG + + S  +  +
Sbjct: 1056 DTGPGIPPDKRDAIFQEFTQGDASTTRAFSGTGLGLSISKRLVELHGGTMWLESEIDQGS 1115

Query: 783  TINCRI 788
                 +
Sbjct: 1116 KFFFSL 1121


>gi|300864270|ref|ZP_07109150.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506]
 gi|300337735|emb|CBN54296.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506]
          Length = 1945

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 171/392 (43%), Gaps = 29/392 (7%)

Query: 415  MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +FE  +T  ++L   +    ++    +D L+E +A+          N    S+ +TEE  
Sbjct: 1111 LFEGQVTAVIEL-ASFRRFSEIHLTFLDQLTESIAIV--------LNTIAASM-RTEELL 1160

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                +    + A        +   +  A  + + ++  KS Q  L+  ++ + E + +  
Sbjct: 1161 KQSQSLAEELQAQQKELTETNKRLEQQAQSLRASEELLKSQQEELQQTNEELEEKAEL-- 1218

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               Q         +  +A R+L EK E L    + K+ F+ ++S+ELR+PL +++    L
Sbjct: 1219 LALQNQEVERKNREIEQARRSLEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILARL 1278

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L  +  G+L  KQ  Y   I ++ T LL L+NDILDLA +++G M +    ++  DL + 
Sbjct: 1279 LSENTDGNLTLKQVDYTRTIYSAGTDLLGLINDILDLAKIESGTMSVEIEQVLFTDLRDH 1338

Query: 654  VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILK 711
            + ++      +  +   +   G +      D +RL Q+   +LSNA  F+ +G   + ++
Sbjct: 1339 LDRTFRQVAQDKKLSFLIELSGAVPKGLYTDAKRLQQVLKNLLSNAFKFTERGEVKLSVE 1398

Query: 712  AARDN------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
             AR+                 FSV + G  I  +  + +F  F        R   G GLG
Sbjct: 1399 VAREGWSLEIETLTNSATVLAFSVSDTGIGISPEKHRVIFEAFQQADGSTSRKYGGTGLG 1458

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LSI     NL GG + ++S     +T    +P
Sbjct: 1459 LSISREIANLLGGEIQLTSRPGEGSTFTLYMP 1490


>gi|217425387|ref|ZP_03456881.1| sensory box histidine kinase [Burkholderia pseudomallei 576]
 gi|217391638|gb|EEC31666.1| sensory box histidine kinase [Burkholderia pseudomallei 576]
          Length = 723

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 199/508 (39%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 217 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 276

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L+    +  ++ +       +  +     +S      +   +G  L V   + P    
Sbjct: 277 RVLMFRHATTQRVIDNPA----RVAVERRRTASLPAHTRFVGRSGGELPVDGNAAPTFDA 332

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 333 NGKLVGAVLIVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAEK 385

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F         E + L G     S+  
Sbjct: 386 LFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFP 444

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 445 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 504

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 505 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 562

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F 
Sbjct: 563 RPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKFR 619

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 620 GKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 679

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 680 CKRIVEHHGGRIFVESEPGQGTTFSFTL 707


>gi|158337906|ref|YP_001519082.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308147|gb|ABW29764.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 888

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 138/338 (40%), Gaps = 20/338 (5%)

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R      E +      ++++ AT + Y  +++G      ++   D  R   +  +ELL  
Sbjct: 273 RDQMTEGEIQFCEQAQLQSLLATRTSYQGQANG----VIVLHQCDRNRTWSEADIELLEA 328

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
              +  I                       AL +       A+  K+ F+ ++S+ELR+P
Sbjct: 329 VAGQVGIAIAQAQLLEQEQQQRQALESNNTALVQAKRDADTANTAKSQFLANMSHELRTP 388

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  +IG T LL  +    L+ +Q+ +VE I +S   LL+L+NDILD + ++AG ++    
Sbjct: 389 MNAVIGMTGLLLNT---DLDLQQADFVETIRSSGDALLSLINDILDFSKIEAGKLEFENQ 445

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
              L   + +  + +A +  + ++ +  + +       + D  RL QI   +L+N + F+
Sbjct: 446 PFDLRICIEQALRIVAPRAVDKSLELAYLFEPDTPEWIIGDVTRLRQIIVNLLTNGVKFT 505

Query: 703 SKGSTVILK----------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
             G  V+              + +      VK+ G  IP D    +F  F        R 
Sbjct: 506 DTGEVVVYIQDVTADHAAPVRKGHHILQIVVKDTGIGIPADRMDRLFKSFSQVDASTTRK 565

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I      L GG + + S     ++    I
Sbjct: 566 YGGTGLGLAICHRLCELMGGRMWVESDVGKGSSFCFTI 603


>gi|220909146|ref|YP_002484457.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865757|gb|ACL46096.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1068

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 116/684 (16%), Positives = 234/684 (34%), Gaps = 50/684 (7%)

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL---KCKKLSNHISVFKV 197
           F ++  T+ +  +   G+         +    G    +    L   + K+    +  +++
Sbjct: 252 FRILHPTEGERWLTAIGQT--------LFDDTGQPKRMTGIALDITQRKQAEKTLQRYQL 303

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEEIKKRMISSS 256
           L +    +V +  + G IL AN +  K    +   +    + + R +    +  +    +
Sbjct: 304 LSEYSRDIVLYISRKGQILEANQAAVKAYGYSRNELLNLQLADLRAIQTLPLLWQQFEQA 363

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVR----VLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
           +      ET+   + G+    ++      +    G   +  D+S        L  + E  
Sbjct: 364 SEGGILFETIHQRKDGSQFPVEVSAQSAVIDGEMGVLSVIRDISDRRRSEIALRKSEE-W 422

Query: 313 HNLTVAIAIFDQ-----NRYLQFHNRSFVELWE---------IDLAFLATNPSNDELLEF 358
             L + I          ++ L   +    E+W          I  A    +P + E ++ 
Sbjct: 423 ARLAIQIGRVGGWRLYLDQNLVEMDERLREIWGESKDAVMVPIAKAMERIHPDDRERVKQ 482

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-LHVIVTSNPRGGTIWMFE 417
              A   P   +  T++     V++      + W L  GQ        S           
Sbjct: 483 AVYAAIDP--ASPGTYEIEYRIVWEDG---SERWVLAKGQAQFEGEAGSRQAVDFFGTLL 537

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T     ET   T  +  G  +     G   +     I   +    +++          
Sbjct: 538 DITEHKQAETALRTTAERLGLALTAAKLGDWSWNAATDIVTFSEQAAAMFGIPPGPYMTW 597

Query: 478 THIRNIAATCSRYYNESDGWDLFAA--------IITSFDDERKSLQGTLELLSDSVLEYS 529
           + I+N+     R           A          +       + +        DS  +  
Sbjct: 598 SQIQNLLHVDDRARARLQVEQAIAEHSDYDIEYRVVDRQGRERWIAAKGRAQYDSSGQVL 657

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +               +            EA  +A+ IK+ F+  +S+ELRSPL  I+G
Sbjct: 658 GMLGVVQDITHRKQAEAEREELLARERAAREAAEQANRIKDEFLAVLSHELRSPLNPILG 717

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           ++            +K  Q +  I  ++ +   L+ D+LD++ +  G + L+ S++ L  
Sbjct: 718 WSK--LLLNGKLNLAKTQQALTTIERNARLQSELIEDLLDVSRILQGKLSLSVSSVDLAS 775

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            +    +++       +I+I+      +G    D  RL Q+   ++SN + F+  G  V 
Sbjct: 776 TIQAAIETVRLAAEAKSIQIETRLAPDVGLVAGDSTRLQQVVWNLVSNGVKFTPAGGRVA 835

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           ++  +       ++ + G  I  D    VF+ F        R   G+GLGL+IV   + L
Sbjct: 836 VRLEQLEQQAQITISDTGKGIAPDFLPHVFDYFRQEDGATTRKFGGLGLGLAIVRHLVEL 895

Query: 768 HGGHVSISSSDEG-VTTINCRIPS 790
           HGG +   S  EG   T   R+P 
Sbjct: 896 HGGTIQAHSPGEGLGATFTVRLPL 919



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 123/415 (29%), Gaps = 50/415 (12%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-------T 228
           S + +              FK+   +     W  D    +L  +   K N         T
Sbjct: 31  SNITDRKQADLARQQQEQHFKIALQTAKLGSWEHDLTTGVLTCSAQCKANFGLPPDAEFT 90

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-----ETVSTLEHGNNKSYKIVRVL 283
              +F     + R   +  I++ +   +  E          ++  L       Y      
Sbjct: 91  HDTLFAALHPDDRPRVEAAIQRAIAQRTDYEVEERCYHPDGSLHWLIVRGRLVYDANDTP 150

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELW 339
                 G+ +D++ +      L  + E L          +  +D        +  +  L+
Sbjct: 151 IR--MVGVTLDITPQKQTEKTLRQSEERLRIAQQAANAGVWNWDIPTNQVTWSAEYYRLY 208

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENI-----FSVYKSSETHKDTWH 393
            +D A   T PS    L  +   ++    Q       + I     F +   +E   + W 
Sbjct: 209 GLDPA--RTAPSYQNWLNSVVEQDRDRVHQAAQAALSDRIDLNVEFRILHPTE--GERWL 264

Query: 394 LPNGQTL-HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              GQTL           G      ++T +   E      ++      ++  + V     
Sbjct: 265 TAIGQTLFDDTGQPKRMTGIAL---DITQRKQAEKT----LQRYQLLSEYSRDIVLYISR 317

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTH-----IRNIAATCSRYYNESDGWDLFAAIITSF 507
            G+I  +N A    +    N L          I+ +     ++   S+G  LF  I    
Sbjct: 318 KGQILEANQAAVKAYGYSRNELLNLQLADLRAIQTLPLLWQQFEQASEGGILFETIHQRK 377

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           D  +  ++ + +         S +       +    +++D  R+E AL +  E  
Sbjct: 378 DGSQFPVEVSAQ---------SAVIDGEMGVLSVIRDISDRRRSEIALRKSEEWA 423


>gi|168217044|ref|ZP_02642669.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182380977|gb|EDT78456.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 571

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 161/382 (42%), Gaps = 43/382 (11%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +  Q+++   ++          +  +  GV  F  D  + + NP  + ++      +
Sbjct: 222 FNYMAEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEII 281

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPL 533
                            N+   +     ++ +F DE+  ++  +    D  +L+     +
Sbjct: 282 G----------------NKLLDYITDKEVLKAFFDEKDRVEIEVNYNDDPKILKIRKASI 325

Query: 534 PNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            N      T++   ++TD  + E               +++ FV ++S+EL++PLT+I G
Sbjct: 326 INEPEIIGTVVVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKG 371

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F + L+       +  +++++  I   S  L  L+ DIL L  ++     +      +++
Sbjct: 372 FAETLR---YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDE 427

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + +V   +  +  +  + I + ++      + D+ +  Q+   ++SN++ ++ KG  V 
Sbjct: 428 EIEKVYMLLNDQAKKKGVEIFLDTNSN-CVLMGDKDKFKQMLLNLVSNSVKYTEKGGKVR 486

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +++   + + I  +++NG  I  +    +F RF         +  G GLGL+IV+  + L
Sbjct: 487 VESYNRDMNLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRL 546

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
             G ++++S     T I   IP
Sbjct: 547 FDGEINVTSELGVGTKIVITIP 568



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           +     +   ++S+    NF + V      +    +I R+  SF      ++++ E   +
Sbjct: 183 ILNPLKELEQLTSTIASGNFHKRVKINSKDD----EIQRLGKSFNYMAEQLEITMERFKD 238

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            Q      IL ++   +  FD++  +   N    +++ I    +        LL+++   
Sbjct: 239 KQ-NGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNK-----LLDYITDK 292

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWMFEN 418
             L    +            +      +  +  + + L +    I+      GT+ + ++
Sbjct: 293 EVLKAFFD------------EKDRVEIEVNYNDDPKILKIRKASIINEPEIIGTVVVIQD 340

Query: 419 LTVQVDLE 426
           +T    LE
Sbjct: 341 ITDIKKLE 348


>gi|255012920|ref|ZP_05285046.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1045

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 224/518 (43%), Gaps = 59/518 (11%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE---LLEFLRS 361
           L+   ++ +N+ +        + L        E  +ID+  L  N + +E     +F+ +
Sbjct: 411 LSRYRDLFNNMPLPYI----RQRLI------REGTQIDVQVLDVNHAFEEKIAPKDFVVN 460

Query: 362 ANKLPEQLN-----WKTWKENIFSVYKSSETH-KDTWHLPNGQTLHVIVTSNPRGGTI-W 414
            +   E  N     +      + +V +S ++   + +  P G    +I+        +  
Sbjct: 461 KHG-KEIANLIGGSYPLLLSAVPTVLESGKSFTCEYYFEPTGLYYTIIIMPTSEENVVDA 519

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENR 473
            F ++T   + +T    +       ++        +   +G+I              E++
Sbjct: 520 FFIDITDIHNFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIY------------ESK 567

Query: 474 LSPGTHIRNIA----ATCSRYYNESDGWDLFAAIITSFDD------ERKSLQGTLELL-- 521
           + PG +I            + Y         A +  +FDD      ++   +  LE L  
Sbjct: 568 VHPGDNIETAEVHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIP 627

Query: 522 ---SDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                   E  ++   +A       + + +++T+  + E  L    +   +++++K++F+
Sbjct: 628 GEDRHEWEEIQVMAEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFL 687

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+++L ++    L  K  ++ + I  ++++LL L+NDILDL+ +
Sbjct: 688 ANMSHEIRTPLNAIVGFSNILAST--DDLEDK-KEFADIIENNNSLLLQLINDILDLSKI 744

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG ++  Y  + +N +L +++QS   K    +++I      +      DR RL Q+   
Sbjct: 745 EAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMIN 804

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +L+NAM F+  GS +     +D+    F V++ G  IPE+  K +F RFV      Q  G
Sbjct: 805 LLNNAMKFTQAGSILFGYKLKDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTFAQ--G 862

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGLSI E  +    G + + S +   +     +P +
Sbjct: 863 TGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLPFQ 900


>gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 998

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L   N+ L +  E K+ F+  +S+E+R+P+  +IG  +LL+ +    L ++Q +YV  
Sbjct: 336 RELGVANDKLVQVTEAKSRFLSAMSHEIRTPMNGVIGMAELLEGT---DLTNQQGEYVSL 392

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL L+NDILD + ++AG + L +    L D+L +  Q++A + +E +I +   
Sbjct: 393 IIKSADTLLGLINDILDFSKIEAGRLDLEHIPFNLRDILGDTLQTLALRANEKDIELTFH 452

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VIL---KAARDNGDFIFSVKNNG 727
               +    + D  RL Q+   ++ NA+ F+  G   V L     +  +   +F V+++G
Sbjct: 453 IPPDIPDKLIGDPLRLRQVIVNLVGNAIKFTEVGEVAVDLLLQSISDSDIQLVFEVRDSG 512

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +     VF  F        R   G GLGL+I      + GG +++ S     +T +
Sbjct: 513 IGISDAQQSKVFKAFDQADTSTTRQFGGTGLGLAIARQLTEMMGGTMAVRSKLNEGSTFS 572

Query: 786 CR 787
             
Sbjct: 573 FS 574


>gi|222084929|ref|YP_002543458.1| two-component sensor histidine kinase protein [Agrobacterium
            radiobacter K84]
 gi|221722377|gb|ACM25533.1| two-component sensor histidine kinase protein [Agrobacterium
            radiobacter K84]
          Length = 1190

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/493 (22%), Positives = 213/493 (43%), Gaps = 16/493 (3%)

Query: 310  EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQ 368
            EI+  L +AI I   +  L   N  F+ L   + LA L      D LL+      K  + 
Sbjct: 696  EIVDQLPLAILIHAGD-RLIHGNPEFLRLTGYESLADLDHVGGLDALLQRHDLEGKTEQP 754

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
                  + +   V  ++      W   +G  L + +    +       E +  +   E  
Sbjct: 755  GTMMVVRADDTLVPVTARLQSIRWE--DGTALMLALMPLEKSDVSTPAEPVPEEARPERM 812

Query: 429  YNTLVKVQ------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               L K+Q        T++  ++GV + G DG I+  N +  +L+  ++   + G     
Sbjct: 813  IEKLAKLQVEIEELQSTLETATDGVVIIGQDGDIRSMNRSASALFNFDDQE-TRGKPFVM 871

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-T 541
            + A  S+         L    + S  ++ + + G         L  ++  L ++      
Sbjct: 872  LFAHESQKAVLDYLSGLSGHGVASVLNDGREVMGREASGGFVPLFMTMGRLNSSNGYCAV 931

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G 
Sbjct: 932  IRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGP 991

Query: 602  L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            + +S+  +Y   I  S   +L++VND+LD++ ++AG M L ++++ LN+ + E    +  
Sbjct: 992  IGHSRYVEYATDIGRSGRHVLDIVNDLLDISKIEAGEMDLEFASVGLNEAIAEAVSLVQP 1051

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
            + +   + I+      + + VAD + + QI   ILSNA+ F+  G  +++  + + NG  
Sbjct: 1052 QANSQRVIIRTALSQAVPNVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEGNGSV 1111

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRR-GVGLGLSIVESFINLHGGHVSISSS 777
            +  +++ G  +     +     F   + +  +R  G GLGL + ++ ++ +    +I+SS
Sbjct: 1112 VMRIRDTGVGMTRSELEQAMKPFRQVSTNSRKRGDGTGLGLPLTKAMVDANRATFAINSS 1171

Query: 778  DEGVTTINCRIPS 790
                T +    PS
Sbjct: 1172 PNEGTLVEVTFPS 1184



 Score = 46.1 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 72/265 (27%), Gaps = 29/265 (10%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           + D L   +        ++  N  + + T  E +     +G    L +    +       
Sbjct: 697 IVDQLPLAILIHAGD-RLIHGNPEFLRLTGYESLADLDHVGGLDALLQRHDLEGKTEQPG 755

Query: 258 LEKNFCETVSTLEHGNN----KSYKIVRV------LNSFGEAGIAIDVSKEIT------- 300
                    + +         +      +      L     +  A  V +E         
Sbjct: 756 TMMVVRADDTLVPVTARLQSIRWEDGTALMLALMPLEKSDVSTPAEPVPEEARPERMIEK 815

Query: 301 ---VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
              +  ++      L   T  + I  Q+  ++  NRS   L+  D       P    ++ 
Sbjct: 816 LAKLQVEIEELQSTLETATDGVVIIGQDGDIRSMNRSASALFNFDDQETRGKPF---VML 872

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTIW 414
           F   + K    L++ +           ++  +      +G  + + +T    N   G   
Sbjct: 873 FAHESQK--AVLDYLSGLSGHGVASVLNDGREVMGREASGGFVPLFMTMGRLNSSNGYCA 930

Query: 415 MFENLTVQVDLETKYNTLVKVQGET 439
           +  ++T     E +     +     
Sbjct: 931 VIRDITQWKRTEEELRNAKRAAETA 955


>gi|16330590|ref|NP_441318.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653081|dbj|BAA17998.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 950

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             +      L P   I+ +   C+  +++++   L    I     E +  Q +LE L++ 
Sbjct: 367 QPYDIVHRLLMPDGRIKYVQEQCNTVFDKNNLPLLSRGTIQDVT-ELQEAQISLEHLNEK 425

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            LE  I                +   ++ +L E       A + K+ F+ ++S+E+R+P+
Sbjct: 426 -LEQRI-----------QERTQELENSQESLLEAKLVAEGATKAKSEFLANMSHEIRTPM 473

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG ++L+  +    L S+Q  Y++ +  +  +LL ++N+ILD + ++AG ++L    
Sbjct: 474 NAIIGMSELVLQT---DLTSQQRNYLQKVQYAGELLLGIINNILDFSKMEAGKLELEQKP 530

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSS 703
             + +++  +   +  +     + +    D ++    V DR RL QI   + +NA+ F++
Sbjct: 531 FSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVKFTN 590

Query: 704 KGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLG 757
           +G   I    LK   +     FSV + G  +  D    +F  F     +   Q  G GLG
Sbjct: 591 QGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLG 650

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCR 787
           L+I +S   L GG + + S     +T +  
Sbjct: 651 LAISKSLTELMGGDIWLESVVGQGSTFHFT 680


>gi|83943090|ref|ZP_00955550.1| response regulator receiver protein [Sulfitobacter sp. EE-36]
 gi|83846098|gb|EAP83975.1| response regulator receiver protein [Sulfitobacter sp. EE-36]
          Length = 685

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 95/406 (23%), Positives = 167/406 (41%), Gaps = 38/406 (9%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I++   L     +         +  E ID + EG   F    R+ + N  +R       +
Sbjct: 278 IFLLGVLLAFRRMALNQTNAHALLAEAIDAIDEGFIAFDDKERVMVVNQKYRDYHPQIAD 337

Query: 473 RLSPGTHIRNIAATCS-RYYNESDGWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSI 530
            + PG  +  +    + R  + S      A +       R   Q  L+ + +D+ L+ + 
Sbjct: 338 LIVPGATMGELVVNWANRTESLSGSKSKQAWVRERLQRFRNPGQAFLQDIGNDNWLKVTE 397

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              P+  T+  + +VT   RA+ A          AD  K  F+ +VS+ELR+PLT I G 
Sbjct: 398 AKTPHGYTVGIWTDVTAEKRAQEA-------AEAADREKTEFLNNVSHELRTPLTVIFGR 450

Query: 591 TDLLKTSKLGSLNS---------------------KQSQYVEYI----SASSTILLNLVN 625
              ++ S                            +  +++       + SS  ++ LV 
Sbjct: 451 ASFMRHSDKMPQAQRLMSALTADGSGCPKSAAAAIEYQKFITDQGAGIAESSQHMIRLVE 510

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD   V  G ++L+ +   L+++   V Q +        + +    DG   +  AD+ 
Sbjct: 511 DLLDWTKVSRGQLELDMAPTQLDEIARTVTQELQPAAEAKGLTLTYAGDGPAATV-ADKV 569

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ QI   +++NA+ F+S+G  + L       + +FSV + G+ I E+    VF RF   
Sbjct: 570 RVKQILYNLITNAIKFTSEG-KIHLSMLHSADEIVFSVTDTGNGIAEEDASRVFQRFQQV 628

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 Q  G+GLGL+I E    LHGG +S+ S     +T +  +P
Sbjct: 629 DGSMTRQNGGLGLGLAISEQLAELHGGSLSLESKLGVGSTFSLTLP 674



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
              +      E +  +      FD    +   N+ + +        +    +  EL+   
Sbjct: 293 NQTNAHALLAEAIDAIDEGFIAFDDKERVMVVNQKYRDYHPQIADLIVPGATMGELVVNW 352

Query: 360 RSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
            +  + L    + + W       +++         + N   L V     P G T+ ++ +
Sbjct: 353 ANRTESLSGSKSKQAWVRERLQRFRNPG-QAFLQDIGNDNWLKVTEAKTPHGYTVGIWTD 411

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLS 444
           +T +   +       + + E ++++S
Sbjct: 412 VTAEKRAQEAAEAADREKTEFLNNVS 437


>gi|315645081|ref|ZP_07898207.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
 gi|315279502|gb|EFU42807.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
          Length = 409

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 8/242 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  +   +  + K+  +  +S+E+R+P+  I+G + LL+   L SL+ +Q +YVE I
Sbjct: 162 ELKQMEDENDRILQEKSELLAVMSHEIRTPMNGIMGMSALLQ---LTSLDEEQREYVELI 218

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS  LL+++  IL+ + V+   M+L      L  L+ +V       +    IR+ V+ 
Sbjct: 219 EQSSESLLSMIEHILEYSKVENTKMELVMEPFYLRPLMKQVTSLFMNDVQRKGIRLHVVI 278

Query: 674 -DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIP 731
            D       AD  ++ Q+   ++SNA+ F+S+G   V +  + +      SV++ G  IP
Sbjct: 279 GDEVPEKVTADANKIRQVLINLISNAIKFTSEGEVSVAVGISPETQAIKISVRDTGIGIP 338

Query: 732 EDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            D    +F  F    H     +  G GLGLSI +    L  G + +  +          I
Sbjct: 339 VDRRHRLFKSFSQAHHAEVTREYTGTGLGLSICKQLTELMNGRIWLEETSGEGACFTFTI 398

Query: 789 PS 790
           P 
Sbjct: 399 PL 400


>gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
 gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
          Length = 1137

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 155/341 (45%), Gaps = 6/341 (1%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             +     A   L +     L        +  T  +        +         + + + 
Sbjct: 344 HEVDFLVRAGEQLAQAVRGALDRSRLESLLDETQRQAEELQAQQEELRVNNEELEQQSRM 403

Query: 514 LQGTLELLS--DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           LQ +  L+    + LE+S   L  AQT          + A+ AL  K   L +A + K+ 
Sbjct: 404 LQESQNLMQAQQAELEHSNAQLE-AQTEQLQYQKQRLLTAQDALEAKARDLAQASQYKSE 462

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y + I  + T LLNL+NDILDLA
Sbjct: 463 FLANMSHELRTPLNSSLILAKLLADNKQQNLTAEQVRYAQTIHNAGTDLLNLINDILDLA 522

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQI 690
            ++AG   +    + +  ++  V + +  +  +  ++   + +  + +F+  D QRL QI
Sbjct: 523 KIEAGQTSVEIGPVTVAKVVAGVMEPLRAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQI 582

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
              +LSNA+ F+++G   +   A DN    F+V++ G  I  D+ + +F+ F        
Sbjct: 583 LKNLLSNALKFTARGEVTMRVFAGDNDTLCFAVRDTGIGIAPDLQERIFDAFHQADGSTH 642

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  G GLGLSI      L GG +++ S+    +     +P
Sbjct: 643 RKYGGTGLGLSISRDLAQLLGGSIAVQSAPGEGSVFTLTLP 683


>gi|328470975|gb|EGF41886.1| sensor protein LuxQ [Vibrio parahaemolyticus 10329]
          Length = 858

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 155/398 (38%), Gaps = 32/398 (8%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F+++   ++    +     +   +  +     + V+   G +   NPA R   
Sbjct: 331 GGSDIEEFDHIGSTLESTFEELEAQKRSFRDLFNFALSPIMVWSEAGVLIQINPAARK-- 388

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                 L     I  +      + ++       AA       +  +L G    + D V  
Sbjct: 389 -----ELVIENDIETMHPVFKGFKDKLVPHLRMAA-------QGATLTGVNVPIGDKVFR 436

Query: 528 YSIIPLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ P+      +  ++   ++T  + AE+          K+ + +  F+  +S+E+R+P
Sbjct: 437 WNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARREAEKSAQARADFLAKMSHEIRTP 496

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   LLK S       +Q   ++ +  S   LL ++NDILD + ++ G   +   
Sbjct: 497 INGILGVAQLLKDSVEA---EEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKH 553

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFS 702
                D +  ++           + + + +          D+ RL QI   ++SNA+ F+
Sbjct: 554 PFSFADTMRTLENIYRPICENKGVELVIENQLDGNVEIFTDQVRLNQILFNLVSNAVKFT 613

Query: 703 SKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
             G  V L A        DN   +  + + G  I  D    +F  FV       R   G 
Sbjct: 614 PSG-CVRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGS 672

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+IV++ +++  G V + S     TT    +P K+
Sbjct: 673 GLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVKD 710


>gi|262382892|ref|ZP_06076029.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295770|gb|EEY83701.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 1021

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 222/518 (42%), Gaps = 59/518 (11%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE---LLEFLRS 361
           L+   ++ +N+ +        + L        E  +ID+  L  N + +E     +F+ +
Sbjct: 387 LSRYRDLFNNMPLPYI----RQRLI------REGTQIDVQVLDVNHAFEEKIAPKDFVVN 436

Query: 362 ANKLPEQLN-----WKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRGGTI-W 414
                E  N     +      + +V +S ++    ++  P G    +I+        +  
Sbjct: 437 KRG-KEIANLIGGSYPLLLSAVPTVLESGKSFTYEYYFEPTGLYYTIIIMPTSEENVVDA 495

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENR 473
            F ++T     +T    +       ++        +   +G+I              E++
Sbjct: 496 FFIDITDIHKFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIY------------ESK 543

Query: 474 LSPGTHIRNIA----ATCSRYYNESDGWDLFAAIITSFDD------ERKSLQGTLELL-- 521
           + PG +I            + Y         A +  +FDD      ++   +  LE L  
Sbjct: 544 VHPGDNIETAEVHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIP 603

Query: 522 ---SDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                   E  ++   +A       + + +++T+  + E  L    +   +++++K++F+
Sbjct: 604 GEDRHEWEEIQVMAEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFL 663

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+++L ++    L  K  ++ + I  ++++LL L+NDILDL+ +
Sbjct: 664 ANMSHEIRTPLNAIVGFSNILAST--DDLEDK-KEFADIIENNNSLLLQLINDILDLSKI 720

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG ++  Y  + +N +L +++QS   K    +++I      +      DR RL Q+   
Sbjct: 721 EAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMIN 780

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +L+NAM F+  GS +     +D+    F V++ G  IPE+  K +F RFV      Q  G
Sbjct: 781 LLNNAMKFTQAGSILFGYKLKDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTFAQ--G 838

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGLSI E  +    G + + S +   +     +P +
Sbjct: 839 TGLGLSICEMIVTQMKGTIGVDSMEGKGSKFWFTLPFQ 876


>gi|190572926|ref|YP_001970771.1| putative two-component sensor histidine kinase response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
 gi|190010848|emb|CAQ44457.1| putative two-component sensor histidine kinase response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
          Length = 923

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 162/371 (43%), Gaps = 33/371 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +    +      ID    G+ V   + R + LSN   R     E          R  A 
Sbjct: 328 RRLLENLDFSSTVIDMAPVGICVLRRNDRALLLSNQLLRDWLGEEGEHSDWQAPWRGHAG 387

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              R                    + + L        D VL            +  F ++
Sbjct: 388 ERGRGL----------EFTARDGRQLQVLHAACRYQGDDVL------------LCVFHDI 425

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +   +A+ AL+   +A   A++ K++F+  +S+E+R+PL  ++G  +LL  +   SL+++
Sbjct: 426 SRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHT---SLDAR 482

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           QSQY+  I +SS++LL L++D+LD++ +++G + L  +     +L   V +S A      
Sbjct: 483 QSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFAASATCK 542

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDF 719
            ++I V +D +L +  + D  R+ Q+   +LSNA+ F+  G  V+L+  +     ++   
Sbjct: 543 GLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHG-RVMLRVRQVQREGESSVL 601

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + V + G  I  +    +F  F         +G GLGLSI +  + L  G + + S   
Sbjct: 602 AWQVTDTGVGIAAEEQARLFEPFRQVRGAASAQGTGLGLSISDRLVRLMSGELQVVSEPG 661

Query: 780 GVTTINCRIPS 790
             ++ + R+P 
Sbjct: 662 LGSSFSVRLPL 672


>gi|158337549|ref|YP_001518724.1| circadian input kinase [Acaryochloris marina MBIC11017]
 gi|158307790|gb|ABW29407.1| circadian input kinase [Acaryochloris marina MBIC11017]
          Length = 735

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 131/282 (46%), Gaps = 5/282 (1%)

Query: 515 QGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           Q  L+ +++ V +      L +              +  + L     A + +++ K+ F+
Sbjct: 315 QDLLKRMAEHVAIAIHQAALQDQVRQHKQTLDKQVEQRTQELHAALLAAQSSNQAKSDFL 374

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PLT +IG +  L    LG L  KQ   ++ I  S   LL L+NDILD + V
Sbjct: 375 ATMSHELRTPLTCVIGMSATLLRWSLGPLTDKQRSCLQTIHDSGEHLLELINDILDFSHV 434

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGKLGSFVADRQRLLQIF 691
            +G   LN S   L  L+ ++ Q +  K   + +++K  +    +   F+AD +R+ QI 
Sbjct: 435 QSGKATLNVSDFSLTTLVQQLLQVMRDKADAHQVQLKANLKIPPERDRFIADLRRVQQIL 494

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
             +  NA+ F+  G  V L+   +    +F V++ G  I       +F +F         
Sbjct: 495 ISLTDNAIKFTPMGGKVTLRVWVETNTVVFQVEDTGIGISSSQLPHLFEKFQQLDGSYHR 554

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              G GLGL++ +  + LH G + +SS +   +    ++P++
Sbjct: 555 TYEGAGLGLALAQQCVTLHQGWIDVSSEEGQGSIFTVQLPNQ 596


>gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 916

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+   L+ +Q  Y+  I
Sbjct: 269 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSE---LSPRQQDYLSTI 325

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N++LD + ++AG + L      L DLL +    +A   HE  + +  +I
Sbjct: 326 EKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVSLI 385

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGS 728
                 +   D  RL Q+ + ++SNA+ F+ +G+ V+     D          SV + G 
Sbjct: 386 YRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESTDSAQLRISVMDTGI 445

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + ++  +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 446 GLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 505

Query: 787 RI 788
            +
Sbjct: 506 TL 507


>gi|326796891|ref|YP_004314711.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326547655|gb|ADZ92875.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 1061

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 8/246 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           ++   L        +A+  K+ F+ ++S+E+R+PL  +IG   L+  S   S+  +Q   
Sbjct: 536 QSREKLRLAKAEAEEANRAKSDFLANMSHEIRTPLNGVIGSLTLVLQSA--SIAKEQRGL 593

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++    S+  LL ++NDILDL+ ++AG + L+   + L +L  E  + +  K  E  +  
Sbjct: 594 LDISRQSALTLLEIINDILDLSKIEAGNLILDRKPVSLTELTKETGELLRAKALEKGLVF 653

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS--VKN 725
            + S        + D  R+ QI   +L NA+ F+ +G   + ++A  +N  +  S  V +
Sbjct: 654 NIPSTPLPAIEVIGDPLRIRQILLNLLGNALKFTHEGEVNLAIRARFENEKYWLSMAVSD 713

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + E+  + +F RF        R   G GLGLSI +    L  G + + S     +T
Sbjct: 714 TGIGLSEEQKRQLFQRFKQADSSTTRLYGGTGLGLSICKEIAALMDGEIHVESELGSGST 773

Query: 784 INCRIP 789
                P
Sbjct: 774 FTFEAP 779


>gi|220908496|ref|YP_002483807.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865107|gb|ACL45446.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 469

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 146/377 (38%), Gaps = 11/377 (2%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +          +   E  +   +G  V    G ++ +N A  +L       L     I
Sbjct: 64  ELMAARQSVEQERQRYQELFEFAPDGYVVTDIHGTVREANCAAAALLNLAPQYLVGKPLI 123

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM- 539
             +A    R +       L    +    +    L    +   ++ L  + +     Q++ 
Sbjct: 124 NFVADEQRREFR---SMLLQLQRVHRLQEWEVRLCPRQKAAFEAALTVAAVRNHYGQSIA 180

Query: 540 --LTFVNVTDSVRAERALTE---KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                 ++T   +AE  L +   +N  L +++ +KN F+  +S+ELR+P+  I+GF+DLL
Sbjct: 181 LRWLMRDITARKQAESHLHQVQLQNLELIESNRLKNQFMGIISHELRTPMNAILGFSDLL 240

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                     +Q  ++E I  ++  LL ++ +IL  + + A  ++L      L +L    
Sbjct: 241 LRRFHDRYEPQQIAFLERILNNAKHLLLMIEEILAYSRLKAHRLELQLEAFDLLELARIT 300

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + +     +  + +++           DR R+ QI   +LSNA+ F+  G   +  A  
Sbjct: 301 AEEMQCMADQKALALELDLPPSPLVVCNDRTRVRQILVNLLSNAIKFTDTGRVTLAIAPG 360

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
                + +V++ G  I       +F  F     +    + G GLGLSI  S + L  G +
Sbjct: 361 KAEKLLITVQDTGIGIDPAHQGRIFQEFWQVNQSQTRSQGGTGLGLSITSSLVTLMQGKI 420

Query: 773 SISSSDEGVTTINCRIP 789
            + S           +P
Sbjct: 421 WVESELGEGAVFRIELP 437


>gi|254446715|ref|ZP_05060190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256140|gb|EDY80449.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 778

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 20/300 (6%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEK 558
                 ++DE  SL  +   + +SV           + + +     +   A R   L   
Sbjct: 212 RRATKRYEDEIGSLVESFNFMLESV-------QTRDEEIQSNNRDLEMEVAARTIELRTA 264

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E  + A++ K+ F+  +S+ELR+P+  I+G + LL       L+ ++  Y++ I +SS 
Sbjct: 265 MEKAQSANKAKSEFLSTMSHELRTPMNAIVGMSSLLMDK---DLDDERQSYIKIIRSSSD 321

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+L+ND+LD + +++G + L      L + L E    +A    +  I   V  D KL 
Sbjct: 322 ALLSLINDVLDYSKIESGHLDLEDQPFNLVNCLEEAMDIVAAPRRDAPIDFIVTIDPKLP 381

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVKNNGSSIPE 732
           + V  D  RL Q+   +L NA+ F+ KG   +     +    +N     ++ + G  IP+
Sbjct: 382 AIVKGDVTRLRQVLINLLGNAVKFTQKGHVWLEAKCCVVGESENVFASIAIHDTGIGIPD 441

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D    +F  F        RR  G GLGL+I +      GG + + S     +T    IP 
Sbjct: 442 DRKHRLFQTFSQVDSSMTRRFGGTGLGLAISQRLAMAMGGIIEVESEVGSGSTFQFTIPL 501


>gi|157962196|ref|YP_001502230.1| histidine kinase [Shewanella pealeana ATCC 700345]
 gi|157847196|gb|ABV87695.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 806

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 195/444 (43%), Gaps = 35/444 (7%)

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-------LTVQVDLETKYNTL 432
            V +  + + DT+ +   +   +  TS  +G  +  FE+       LT Q+        +
Sbjct: 108 RVLEELDDYIDTFSMLINEIYSINGTSAEQG-LLARFEHNSNELQLLTNQLKDTELLELI 166

Query: 433 VKVQGETID--HLSEGVAVFGPDGRIKLSNPAF----RSLWKTEENRLSPGTHIRNIAAT 486
           +  Q    D     +   +     + K+         +S    ++  LS       + ++
Sbjct: 167 IANQLTVFDFFKSFDSRLLTRITHQFKIIEQHIIDKPQSTLPLQQAFLSFEHAFFQLQSS 226

Query: 487 CSRY-YNESDGWD-LFAAIITSFDDERKSLQGTLELLSDSVLEYSII-------PLPNAQ 537
             R  Y+ES G+       + S +   ++L  T+ L  D  +   ++        L    
Sbjct: 227 MKRRGYSESLGYHGTLRQNVHSVERSLETLFNTIPLKVDKSVSGLVVTQSIVELLLVLLI 286

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             + +       R E+ L    E  ++A+  K+SF+ ++S+E+R+PL  IIG T++L  S
Sbjct: 287 IGILYYIFYAITRMEKGLIFAREKEQQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDS 346

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           KL ++   Q  Y+  I++SS  LL L+NDILDL+ +++G ++    T  + +++ +    
Sbjct: 347 KLTAI---QKDYLATINSSSQTLLMLINDILDLSKIESGHLEFCPHTCNIKEVIYDTAAL 403

Query: 658 IATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAA 713
           I  K  + NI +++I  D       AD Q+L QI   + SNA+ F+  GS    +++KA 
Sbjct: 404 ITPKAQQKNIVLRIIIGDEVPTYICADEQKLRQILMNLASNAIKFTRSGSVSFKLVVKAE 463

Query: 714 RDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGG 770
                  +FSVK+ G  I ++    +F  F            G GLGLSI    + + GG
Sbjct: 464 EGENIRLLFSVKDTGVGIDKNKHAKIFEEFQQEESNTSIDYGGTGLGLSIATKMVKIMGG 523

Query: 771 HVSISSSDEGVTTINCRI--PSKE 792
            + ISS     +  +  +  P +E
Sbjct: 524 EIMISSDKGVGSEFHFILAFPKQE 547


>gi|260463553|ref|ZP_05811752.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
 gi|259030644|gb|EEW31921.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
          Length = 1307

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/576 (21%), Positives = 228/576 (39%), Gaps = 24/576 (4%)

Query: 223  KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
              +       F+ A         EE     + +++           L+         V  
Sbjct: 742  VDDDSMTSADFRDAEDNEDWAGSEEGAAPDVQAASDGAEAHAERPRLQ---------VPP 792

Query: 283  LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            L + G    A  V  E    D L     +L  L V + I   ++ L + N  F+ L    
Sbjct: 793  LKTEGFTPSAFSVGDESKAPDTL-----LLGKLPVPLLIHSGDQ-LHYANEEFLNLTGYA 846

Query: 343  L-AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                L        L     + + + +  +     +         +    +    +G+ L 
Sbjct: 847  ALDDLEDAGGLGALFADPYAEDGVSDGSDRALRLKTRDGQEFPIDAILRSVPWRDGKALM 906

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLE--TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            ++V  +    T      +  +      ++    +      ID  ++GV + G DG I+  
Sbjct: 907  LVVRRSGEDETPVALHVVGDEPTQPDISELKARIAEMRTIIDTATDGVVLIGTDGTIRSI 966

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            +    +L+  + + ++ G    ++ A  S+         L    + S  ++ + + G   
Sbjct: 967  SRPAEALFGFDSDEVT-GKPFASLFAIESQRAARDYLTGLSEPGVASVLNDGREVIGREA 1025

Query: 520  LLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                  L  +I  LPN         ++T   RAE  LT+      +A   K  F+  +S+
Sbjct: 1026 QGRFIPLFMTIGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISH 1085

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            E+R+PL  IIGF++L+   K G + N +   Y+  I+ S   +L+LVND+LD++ ++AG 
Sbjct: 1086 EIRTPLNAIIGFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQ 1145

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             ++ Y  + LND L E    +  + +   + I+     +L   VAD + + QI   ILSN
Sbjct: 1146 QEMAYEAVSLNDTLAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSN 1205

Query: 698  AMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR-GV 754
            A+ ++  G  VI+  A   +GD +  V++ G  + +   +     F   NA +  R  G 
Sbjct: 1206 AIRYTQAGGQVIVSTAYETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGT 1265

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGL + ++ +  +    +I+S+    T +    PS
Sbjct: 1266 GLGLPLTKAMVEANRARFTINSTPGEGTLVEVAFPS 1301



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 75/262 (28%), Gaps = 25/262 (9%)

Query: 198  LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK------- 250
            L   L   +        + +AN  +   T    +   +  G    LF +   +       
Sbjct: 816  LLGKLPVPLLIHSGD-QLHYANEEFLNLTGYAALDDLEDAGGLGALFADPYAEDGVSDGS 874

Query: 251  ----RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI------- 299
                R+ +    E      + ++   + K+  +V   +   E  +A+ V  +        
Sbjct: 875  DRALRLKTRDGQEFPIDAILRSVPWRDGKALMLVVRRSGEDETPVALHVVGDEPTQPDIS 934

Query: 300  TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL-LEF 358
             +  ++     I+   T  + +   +  ++  +R    L+  D   +   P      +E 
Sbjct: 935  ELKARIAEMRTIIDTATDGVVLIGTDGTIRSISRPAEALFGFDSDEVTGKPFASLFAIES 994

Query: 359  LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIWMFE 417
             R+A      L+       +    +          +P    L + +   P   G   +  
Sbjct: 995  QRAARDYLTGLSEPGVASVLNDGREVIGREAQGRFIP----LFMTIGRLPNDSGFCAVVR 1050

Query: 418  NLTVQVDLETKYNTLVKVQGET 439
            ++T     E        V    
Sbjct: 1051 DITQWKRAEEDLTQARAVAERA 1072


>gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
 gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
          Length = 1145

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 144/316 (45%), Gaps = 5/316 (1%)

Query: 480 IRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQ 537
           +R +     R   E     +         +++ ++L+ +   L    +E          Q
Sbjct: 385 LRTLLHETQRQTEELQVQGEELRVSNEELEEQSRALKESQARLEQQQVELEQTNSQLEEQ 444

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                    D  +A  A+  + + + +A   K+ F+ ++S+ELR+PL + +    LL  +
Sbjct: 445 AQELERQKDDLEKANDAVRLQAQEVERASRYKSDFLANMSHELRTPLNSSLILAKLLADN 504

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +L ++Q ++ + I +S   LLNL+NDILDL+ ++AG ++++   + +N  ++ ++Q 
Sbjct: 505 ADENLTAEQVKFAQTIQSSGNDLLNLINDILDLSKIEAGHVEVSPEPVAINRTVDGLRQL 564

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                 +  + + +     + S +  D QRL Q+   +L+NA+ F+++G   +L     +
Sbjct: 565 FDPLAAQKGLNLSIEVAPDVPSVIETDPQRLEQVLKNLLANAVKFTAEGQVSLLVRPAGD 624

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
                SV + G  I ED  +++F  F         +  G GLGLSI    + L GG + +
Sbjct: 625 AQIAISVVDTGIGIAEDQQRNIFEAFHQADSTISRKFGGTGLGLSISRELVRLLGGRMHL 684

Query: 775 SSSDEGVTTINCRIPS 790
            S     +T    IP 
Sbjct: 685 QSRPGTGSTFTVIIPK 700


>gi|167898529|ref|ZP_02485930.1| sensory box histidine kinase [Burkholderia pseudomallei 7894]
          Length = 709

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 199/508 (39%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 203 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 262

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L+    +  ++ +       +  +     +S      +   +G  L V   + P    
Sbjct: 263 RVLMFRHATTQRVIDNPA----RVAVERRRTASLPAHTRFVGRSGGELPVDGNAAPTFDA 318

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 319 NGKLVGAVLIVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAEK 371

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F         E + L G     S+  
Sbjct: 372 LFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFP 430

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 431 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 490

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 491 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 548

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F 
Sbjct: 549 RPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKFR 605

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 606 GKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 665

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 666 CKRIVEHHGGRIFVESEPGQGTTFSFTL 693


>gi|241888981|ref|ZP_04776285.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379]
 gi|241864230|gb|EER68608.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379]
          Length = 642

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 170/424 (40%), Gaps = 24/424 (5%)

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-NTLVK 434
           + + S  +   +      L N  T+  I T +  G    +F  ++ +++ E     T  +
Sbjct: 230 KTVTSSIEKMSSQVKKMALGNYGTVVGIDTDDEIGDLAKVFNQISKRIEEEQAVTETERR 289

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNE 493
                I+ + +G+     +GRI L N +   +     + +  G  +  I          E
Sbjct: 290 KLATIIESMMDGIITTDNNGRIILINTSAEDMLGGRNDEIFIGKDVLKILNITEYESIEE 349

Query: 494 SDGWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
               +    +  S  DE   L+  + ++  +   + + +       ++   +VTD  R E
Sbjct: 350 ILEAEDSLLVNASKSDEELLLRAEISKIEKEDKEDLTQMSTELEGYIIVLYDVTDQERQE 409

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +               +  FV  VS+ELR+PLT +  + + L+   L        Q+++ 
Sbjct: 410 KE--------------RREFVSTVSHELRTPLTTMNSYIEALEEGVLED-KELAPQFIDT 454

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T ++ +VN+++ L  +D          I +N +L ++    A    E N      
Sbjct: 455 IHKETTRMIRMVNELMQLGKMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKN--FIKH 512

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI 730
                     D+ +L Q+F  I++NA+ +S  G  + ++  ++  +     S+K+ G  I
Sbjct: 513 IPKSPIFVEGDQDKLTQVFDNIVNNAIKYSPNGKNITVRVRQNYHHNRVSISIKDEGVGI 572

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      +FNRF       QR   G GLGL++ ++ +  H G +   S +   + I   +
Sbjct: 573 PLVHIDKIFNRFYRVDKSRQRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTL 632

Query: 789 PSKE 792
           P ++
Sbjct: 633 PCEQ 636



 Score = 41.5 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 82/285 (28%), Gaps = 36/285 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            ++     +      I+ ++   I   D N  +   N S  ++       +       ++
Sbjct: 279 EEQAVTETERRKLATIIESMMDGIITTDNNGRIILINTSAEDMLGGRNDEIFIGKDVLKI 338

Query: 356 L-----EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           L     E +    +  + L     K +   + ++  +  +     +     +   S    
Sbjct: 339 LNITEYESIEEILEAEDSLLVNASKSDEELLLRAEISKIEKEDKED-----LTQMSTELE 393

Query: 411 GTIWMFENLTVQVDLETKYNTL-----------VKVQGETIDHLSEGVA--------VFG 451
           G I +  ++T Q   E +               +      I+ L EGV            
Sbjct: 394 GYIIVLYDVTDQERQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVLEDKELAPQFID 453

Query: 452 PDGR-----IKLSNPAFR--SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
              +     I++ N   +   +   EE+       I  +    +  +  +     F   I
Sbjct: 454 TIHKETTRMIRMVNELMQLGKMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKNFIKHI 513

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                  +  Q  L  + D+++  +I   PN + +   V      
Sbjct: 514 PKSPIFVEGDQDKLTQVFDNIVNNAIKYSPNGKNITVRVRQNYHH 558


>gi|53717169|ref|YP_105595.1| sensory box histidine kinase [Burkholderia mallei ATCC 23344]
 gi|167742919|ref|ZP_02415693.1| sensory box histidine kinase [Burkholderia pseudomallei 14]
 gi|167923067|ref|ZP_02510158.1| sensory box histidine kinase [Burkholderia pseudomallei BCC215]
 gi|52423139|gb|AAU46709.1| sensory box histidine kinase [Burkholderia mallei ATCC 23344]
          Length = 723

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 199/508 (39%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 217 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 276

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L+    +  ++ +       +  +     +S      +   +G  L V   + P    
Sbjct: 277 RVLMFRHATTQRVIDNPA----RVAVERRRTASLPAHTRFVGRSGGELPVDGNAAPTFDA 332

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 333 NGKLVGAVLIVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAEK 385

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F         E + L G     S+  
Sbjct: 386 LFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFP 444

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 445 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 504

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 505 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 562

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F 
Sbjct: 563 RPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKFR 619

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 620 GKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 679

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 680 CKRIVEHHGGRIFVESEPGQGTTFSFTL 707


>gi|153870999|ref|ZP_02000277.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072537|gb|EDN69725.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 673

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 126/257 (49%), Gaps = 12/257 (4%)

Query: 547 DSVRAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  + E+AL+E  E    A +        K+ F+ ++S+ELR+PL  IIG++++L+    
Sbjct: 152 ERQQIEKALSEAKEIAEHARQEAETANITKSQFLANMSHELRTPLNAIIGYSEILREDAE 211

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                     ++ I  +   LL L+ND+LDL+ +++G M L    + L+ L+++V  ++ 
Sbjct: 212 DLEQEDFIPDLKKIDTAGRHLLGLINDVLDLSKIESGKMDLLIEPVNLDMLIDKVLGTVQ 271

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN 716
             + +    +K+     LG    D  +L QI   +LSNA  F+ +G     +  +   + 
Sbjct: 272 PLIEKKANLLKIERPTVLGKIQTDMTKLCQILLNLLSNAAKFTEQGIIEFQIYHQINTEG 331

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              IF V +NG  + E   + +F+ F        RR  G GLGL+I + F  + GGH+ +
Sbjct: 332 DKVIFCVTDNGIGMTEKQQEKLFHPFTQADSSTTRRYGGTGLGLTITKDFAEMMGGHIKV 391

Query: 775 SSSDEGVTTINCRIPSK 791
           +S     +T    +P +
Sbjct: 392 ASDFGFGSTFTLSLPIQ 408


>gi|167849925|ref|ZP_02475433.1| sensory box histidine kinase [Burkholderia pseudomallei B7210]
 gi|167915237|ref|ZP_02502328.1| sensory box histidine kinase [Burkholderia pseudomallei 112]
          Length = 709

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 199/508 (39%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 203 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 262

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L+    +  ++ +       +  +     +S      +   +G  L V   + P    
Sbjct: 263 RVLMFRHATTQRVIDNPA----RVAVERRRTASLPAHTRFVGRSGGELPVDGNAAPTFDA 318

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 319 NGKLVGAVLIVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAEK 371

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F         E + L G     S+  
Sbjct: 372 LFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFP 430

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 431 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 490

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 491 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 548

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F 
Sbjct: 549 RPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKFR 605

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 606 GKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 665

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 666 CKRIVEHHGGRIFVESEPGQGTTFSFTL 693


>gi|28901075|ref|NP_800730.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364054|ref|ZP_05776777.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
 gi|260879926|ref|ZP_05892281.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AN-5034]
 gi|260894602|ref|ZP_05903098.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus Peru-466]
 gi|50401015|sp|Q87GU5|LUXQ_VIBPA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|28809588|dbj|BAC62563.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086409|gb|EFO36104.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus Peru-466]
 gi|308092294|gb|EFO41989.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AN-5034]
 gi|308114073|gb|EFO51613.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
          Length = 858

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 155/398 (38%), Gaps = 32/398 (8%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F+++   ++    +     +   +  +     + V+   G +   NPA R   
Sbjct: 331 GGSDIEEFDHIGSTLESTFEELEAQKRSFRDLFNFALSPIMVWSEAGVLIQINPAARK-- 388

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                 L     I  +      + ++       AA       +  +L G    + D V  
Sbjct: 389 -----ELVIENDIETMHPVFKGFKDKLVPHLRMAA-------QGATLTGVNVPIGDKVFR 436

Query: 528 YSIIPLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ P+      +  ++   ++T  + AE+          K+ + +  F+  +S+E+R+P
Sbjct: 437 WNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARREAEKSAQARADFLAKMSHEIRTP 496

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   LLK S       +Q   ++ +  S   LL ++NDILD + ++ G   +   
Sbjct: 497 INGILGVAQLLKDSVEA---EEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKH 553

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFS 702
                D +  ++           + + + +          D+ RL QI   ++SNA+ F+
Sbjct: 554 PFSFADTMRTLENIYRPICENKGVELVIENQLDGNVEIFTDQVRLNQILFNLVSNAVKFT 613

Query: 703 SKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
             G  V L A        DN   +  + + G  I  D    +F  FV       R   G 
Sbjct: 614 PSG-CVRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGS 672

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+IV++ +++  G V + S     TT    +P K+
Sbjct: 673 GLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVKD 710


>gi|294054185|ref|YP_003547843.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613518|gb|ADE53673.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 1191

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 119/255 (46%), Gaps = 10/255 (3%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                +  R    L    E    A+ IK+ F  ++S+E+R+P+ +I+GF D+L+     ++
Sbjct: 808  QRTQELQRQSEELVIAKEHAESANRIKSEFTANISHEIRTPMNSIMGFADILRDE---TV 864

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            N     Y++ +  S   LL++++D+LD++ ++A  + L+     L+    +  +    K+
Sbjct: 865  NPTHQHYLDAVLKSGDTLLHMIDDLLDMSKLEADKLSLHPRPTNLSSETRDTLRMFQPKL 924

Query: 663  HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD---NG 717
             E  + ++ +SD  +  S + D  R  Q+   I+ NA+ F+  G   + L+  R    + 
Sbjct: 925  SEKALDLEFLSDPNIPSSLLIDATRYRQVLLNIVGNAIKFTDSGKISIRLELVRQYALHA 984

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
                ++ + G  IPE+  + +FN F   +        G GLGL+I +  + +  G + + 
Sbjct: 985  HVRCAISDTGEGIPENQLQRIFNAFEQASRDFTRSEMGSGLGLAISKRLVEMMDGQIRVV 1044

Query: 776  SSDEGVTTINCRIPS 790
            S     +T     P 
Sbjct: 1045 SRVGRGSTFTVDFPK 1059


>gi|83312029|ref|YP_422293.1| sensor protein barA [Magnetospirillum magneticum AMB-1]
 gi|82946870|dbj|BAE51734.1| Sensor protein barA [Magnetospirillum magneticum AMB-1]
          Length = 1248

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 151/371 (40%), Gaps = 16/371 (4%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           +T+  +L+  Q    +  + G+A F  +  I   NP    L+      L   +     A 
Sbjct: 579 QTEIQSLLSEQQAIFEAATVGIA-FLKNRVIVRGNPRLDKLFGYGPGELVGQSTRIWFAD 637

Query: 486 TCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             +          L    +   + E  RK        +S S ++ S +   +  T+    
Sbjct: 638 DAAFADVGGAYEALSRGEVHQREQEYLRKDQSRFWCRISGSAIDPSDL---SRGTVWMLE 694

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT +     A     +A   A   K+ F+ ++S+E+R+P+  IIG   L   +    L+
Sbjct: 695 DVTQARATAEAQARAKDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKT---DLD 751

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  YV  I  S   LL ++NDILD + ++AG +++  + I L+ +L  V   I+ K  
Sbjct: 752 PRQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKAT 811

Query: 664 ENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD---NGD 718
              + +      G     + D  RL Q+     +NA+ F+  G  V+ ++   D   +  
Sbjct: 812 AKGLELLFDVGAGVPLDLMGDALRLGQVLINYANNAVKFTEAGEIVVAVRLMEDLGPDVM 871

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  + ++    +F  F        R   G GLGL+I +    L GG V + S
Sbjct: 872 LRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDS 931

Query: 777 SDEGVTTINCR 787
                +T    
Sbjct: 932 VPGQGSTFWFT 942



 Score = 41.1 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 15/159 (9%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +   L+    I    TV IA F +NR +   N    +L+      L    +     +
Sbjct: 579 QTEIQSLLSEQQAIFEAATVGIA-FLKNRVIVRGNPRLDKLFGYGPGELVGQSTRIWFAD 637

Query: 358 FLRSANKLP--EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
               A+     E L+     +      +  ++    W   +G  +     S+   GT+WM
Sbjct: 638 DAAFADVGGAYEALSRGEVHQREQEYLRKDQSR--FWCRISGSAIDP---SDLSRGTVWM 692

Query: 416 FENLT-VQVDLETKYNT------LVKVQGETIDHLSEGV 447
            E++T  +   E +           + + + + ++S  +
Sbjct: 693 LEDVTQARATAEAQARAKDAAEDAARTKSDFLANMSHEI 731


>gi|312143225|ref|YP_003994671.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311903876|gb|ADQ14317.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 525

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/500 (18%), Positives = 196/500 (39%), Gaps = 35/500 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           + ++L      F++       N+   +   + +  L     N  ++     + K+     
Sbjct: 11  LFNDLKQIAFTFNKADEFGAVNKKMADFCGLKIEELENK--NISVILNQEDSLKI----- 63

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----GGTIWMFENLTVQVDL 425
            K + + IF   +  +           + + V V  +          + +  ++T ++  
Sbjct: 64  -KNFNQKIFESGERKKKKIILEINNKKKNVEVDVIPHQNYEQEIDYLLCLAVDITDKIKK 122

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT--------EENRLSPG 477
           E  +    +      D       V+     I   N     ++            N L P 
Sbjct: 123 ENIFFRNRERYRTLFDQAPLAFVVYDRQTNIIDWNQRAEEIFGWEKEEVLDKNFNLLVPE 182

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            +   +     + ++    ++       S D      +    ++ D   E +II     +
Sbjct: 183 DYYSEVTEMTEKLFSGFQNYNNNINKNVSKDGNEIYCEWNNAIIRDQ--EDNII-----E 235

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-- 595
            +    ++T+ +RAE  + ++NE L +  +++  F  ++S+EL++PL  I     LL+  
Sbjct: 236 VISIARDITERLRAEEKIKKQNEEL-EYSKLRTQFFANISHELKTPLNLIFSSLQLLEFY 294

Query: 596 --TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
              S+      K + Y++ I  +   LL LVN+++D+  ++     L+     +  L+ E
Sbjct: 295 LYNSQTYKDKDKINNYLKSIKNNGFRLLRLVNNLIDITRIEVDAFSLHRGNFDIVKLIRE 354

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  +++  + E     K I D        D   + ++   ++SNA+ FS++G  +IL   
Sbjct: 355 IVNTVSDYLEEKERDFKFICDLDSAVIACDPFNIERVILNLISNAVKFSARGDQIILTLQ 414

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
           + +     SVK+ G  I ++    +F++F         +R G G+GLS+V+S I +HGG 
Sbjct: 415 KVDEAISLSVKDTGIGIEKENQAIIFDKFRQVDQSFKKKREGSGIGLSLVKSIIEMHGGK 474

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S     +     +P K
Sbjct: 475 IELESDYGYYSNFKVFLPFK 494



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 290 GIAIDVSKEITVN----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            +A+D++ +I               +     +A  ++D+   +   N+   E++  +   
Sbjct: 111 CLAVDITDKIKKENIFFRNRERYRTLFDQAPLAFVVYDRQTNIIDWNQRAEEIFGWEKEE 170

Query: 346 LATNPSNDELL-EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           +     N  +  ++     ++ E+L       N       S+   + +   N   +    
Sbjct: 171 VLDKNFNLLVPEDYYSEVTEMTEKLFSGFQNYNNNINKNVSKDGNEIYCEWNNAIIRDQE 230

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
            +      I +  ++T ++  E K     +
Sbjct: 231 DNIIE--VISIARDITERLRAEEKIKKQNE 258


>gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1420

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 95/511 (18%), Positives = 192/511 (37%), Gaps = 30/511 (5%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            S+   +N        +L  + + + I D  R ++        +  +  + +   P  D  
Sbjct: 754  SRNQELNLANGDLVNLLDTVDIPVIILDLERRIRRFTPKARSIMNVLPSDVG-RPLEDIT 812

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRG 410
            L            ++       +  V K++   +       G    + +       N   
Sbjct: 813  L-----------NVSVPDLGAQVAEVMKTARVREFEVQNWTGHWFRMHLRPYKTPENRID 861

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            G I    ++       ++           ++ +   + V     R+  +N AF   +   
Sbjct: 862  GAILSLVDIDALKHQVSQVEWARDDATGIVEAVQVPLVVLDGRMRLLSANKAFYQAYPAS 921

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAA--IITSFDDERKSLQ---GTLELLSDSV 525
                   +               +    + A    +   + E          + L + SV
Sbjct: 922  AAETVAKSLFELSGGAWDVPELRAALGQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSV 981

Query: 526  LEYSIIP-LPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRS 582
               + +P L  A   +T     +  RAE      +  E   +A+  K+ F+  +S+ELR+
Sbjct: 982  HSRTGLPMLLLAIEDITERKQRELERAELLAHAQQAKEEAERANRAKDQFLATLSHELRT 1041

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL+ ++    LL+   +   ++K  +  E I  S+ + + L++D+LD++ +  G +++ +
Sbjct: 1042 PLSTMLMQAQLLRRGTMD--DAKIKRASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEF 1099

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             T+ L  ++    +S++ +    +I  +   D  LG    D  RL QI   +L+NA+ FS
Sbjct: 1100 QTVHLPGVVQAALESVSAQAERKSILFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFS 1159

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
            ++G  V +   R  G     V + G+ I  +  + +F+RF+       R   G+GLGL+I
Sbjct: 1160 AEGQRVSVVLERMEGSARLQVSDRGAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAI 1219

Query: 761  VESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            V   + LHGG V   S            +P 
Sbjct: 1220 VRHLVELHGGTVQAESPGKGQGAIFTVILPL 1250


>gi|284165566|ref|YP_003403845.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015221|gb|ADB61172.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 793

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/661 (16%), Positives = 235/661 (35%), Gaps = 57/661 (8%)

Query: 163 CAFLR-ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
            AFLR + ++     E A T  + + +    ++   L           D  G +L  N +
Sbjct: 159 AAFLRSVATVLASAVENARTERRFEAIFEDPNILVGLL----------DPDGTVLDINGT 208

Query: 222 Y-----KKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
                     +  G  F +     R    + ++++    ++  E    ET  T   G   
Sbjct: 209 AMEYIDADLADVTGEPFWETPWWGRGDDARADVEEWTNRAAEGEYVEFETDLTRPSGERY 268

Query: 276 SYK-IVRVLNSFGEAGIAI-----DVSKEITVNDQLTHTYEILHNLTVAIAI----FDQN 325
           +   + R +       ++I     DV++       L      L   T A A+    +   
Sbjct: 269 TINGVFRPVTDDDGDVVSIIVSDRDVTERKERERYLEDAKAQLEAATDAGAVGTWEWHIP 328

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
                   SF   + ID          + LL  +          +    +  I +  ++ 
Sbjct: 329 EDEFVAGPSFARTFGIDPEAARDGVPLESLLSSVHED-------DRDRVERRIEAAVENC 381

Query: 386 ETHKDTWHL--PNGQTLHVIVTSN---PRGGTIWMF----ENLTVQVDLETKYNTLVKVQ 436
             +++ + +   +G+   V+          G    F     ++T +   E +     K  
Sbjct: 382 AEYEEEYRVRNADGEVRWVVARGTVEADDDGNPKTFPGALTDITDRKQAELEAEKQRKQL 441

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
                 L  G  V   DG ++ +N   R +W  +    +         A  +      D 
Sbjct: 442 ETLFQVLPVGAVVADADGTLRTANDTAREIWGGDVFDAASVDEYAKFDAVWADSGEPVDL 501

Query: 497 WDLFAAIITSFDDERKSLQGTLEL----LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            +    ++   D E  +     E+        V+    +P+ +    +T   VT +   E
Sbjct: 502 DEW--TMVRVLDGEAVTEPNIYEINAFDGDRRVIMQHGMPVTDESGEVTRAVVTLTDITE 559

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   E    L +++E    F    S++L+ PL  +  +  LL+     +++    ++++Y
Sbjct: 560 R--REFQRKLEESNERLEQFAYAASHDLQEPLRMVTSYLRLLENRYGDAIDGDGQEFLDY 617

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               +  +  +++ +L  + V+     L    + L  ++++V   +  ++ E +  +++ 
Sbjct: 618 AVDGAERMSEMIDGLLAYSRVETRGDPL--EPVDLEGVIDDVIDDLQFQIDETDAALELS 675

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIP 731
           +   L +   D  +L Q+F  +L NA+ +       V + A R    +  +V + G  I 
Sbjct: 676 A---LPTVEGDASQLRQVFQNLLDNALTYHDDDPPRVSVDAQRQGEQWEIAVSDAGIGIA 732

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  + VF  F     + +  G G+GL++ +  +  HGG + I S     TT    +P+ 
Sbjct: 733 PEDQERVFTVFDRLHGQDEYEGTGIGLALCQRIVERHGGEIRIDSEPGEGTTFTFTLPAA 792

Query: 792 E 792
           E
Sbjct: 793 E 793


>gi|126455985|ref|YP_001075878.1| sensory box histidine kinase [Burkholderia pseudomallei 1106a]
 gi|242312376|ref|ZP_04811393.1| sensory box histidine kinase [Burkholderia pseudomallei 1106b]
 gi|126229753|gb|ABN93166.1| sensory box histidine kinase [Burkholderia pseudomallei 1106a]
 gi|242135615|gb|EES22018.1| sensory box histidine kinase [Burkholderia pseudomallei 1106b]
          Length = 723

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 199/508 (39%), Gaps = 29/508 (5%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++ +    + +Q    +  L ++   +   D    + F NR   E+  +    +   P  
Sbjct: 217 VEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE 276

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
             L+    +  ++ +       +  +     +S      +   +G  L V   + P    
Sbjct: 277 RVLMFRHATTQRVIDNPA----RVAVERRRTASLPAHTRFVGRSGGELPVDGNAAPTFDA 332

Query: 409 ---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                G + +  +++ +           +     ++     + + G DGRI L N     
Sbjct: 333 NGKLVGAVLIVRDVSERE-------RAEERFRLAVEAAPTAMIMVGRDGRIVLVNSQAEK 385

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+      +  G  I  +     R  + +     F         E + L G     S+  
Sbjct: 386 LFGYARGDM-IGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFP 444

Query: 526 LEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ 
Sbjct: 445 VEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQE 504

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++   
Sbjct: 505 PLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDAR 562

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             +    +L+E  ++++  + E+  ++       L +      +L+ +F  ++ NA+ F 
Sbjct: 563 RPVDCEHVLDEALRNLSAAIRESGAQVT---HDPLPTVHGIEAQLVLLFQNLIGNAIKFR 619

Query: 703 SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            K     + L+A   +  ++  V++NG  I     + +F  F     R +  G GLGL++
Sbjct: 620 GKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLAL 679

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S     TT +  +
Sbjct: 680 CKRIVEHHGGRIFVESEPGQGTTFSFTL 707


>gi|147676581|ref|YP_001210796.1| hypothetical protein PTH_0246 [Pelotomaculum thermopropionicum SI]
 gi|146272678|dbj|BAF58427.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 487

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 3/239 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K  AL + D+ +  FV +VS+ELR+PL+ ++G+T+ L      S   +Q  Y+  I 
Sbjct: 249 LQDKVAALERLDQTRREFVANVSHELRTPLSIMLGYTEALIDGLAHSDTDRQK-YLNNIH 307

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  LV ++LDL+ ++AG +        +  +   V         +  + ++    
Sbjct: 308 EEILRLRRLVTELLDLSRMEAGQVNAEMHETDVAAVAGRVFDKFQAVAAKKGVELRNSLP 367

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L   +A+  RL Q+F  +L NA+  +  G  V + A     +   S+ + G  IP + 
Sbjct: 368 SVLHPVLANPDRLEQVFINLLDNAIRVTPAGGVVEMTAYELKNELRVSISDEGHGIPPEE 427

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              V+ RF        R   G GLGL+IV+  +  HGG V I+S  E  +T +  IP K
Sbjct: 428 QPLVWERFYKVDKSRTRTGEGTGLGLAIVKKIVEAHGGSVEIASMPEKGSTFSFTIPKK 486


>gi|172058670|ref|YP_001815130.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991191|gb|ACB62113.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 847

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 151/355 (42%), Gaps = 15/355 (4%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           G+ ++ + E V     +    L N     L+   +      +++ +     S      D 
Sbjct: 494 GQLLNSIREAVVYIEHESDELLVNEPLMKLFPEVQTEYQDDSNLSSFRQAMSALSAIIDE 553

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            + F   I    ++       L  +        I     A+ +        ++   R +T
Sbjct: 554 PEPFEQYIEQIVEQNLPKDSLLVSIRSHSAYIQIY----AEKIQINQVWVGTMLVLRDVT 609

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++ EA    D +K  FV  VS+ELR+PL++I GFT+L+   ++     KQ +Y+  I + 
Sbjct: 610 KETEA----DRMKEEFVSTVSHELRTPLSSIYGFTELMLNREIDP--PKQRKYLTTIHSE 663

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  L  LVND LD+  +++   +   +T  L  L  E+          + +  + +    
Sbjct: 664 TGRLTTLVNDFLDVQRMESSEQRYQMATFDLVQLAAELIDFHDASHTTHELSFEAVGP-- 721

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                AD +++ Q+ + +LSNA+ +S  G  V ++    +G    ++++ G  IP++   
Sbjct: 722 -IMIDADAEKIKQLLNNLLSNAIKYSPDGGNVAIRIENHDGFAEITIRDQGIGIPQEAMS 780

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F++F    +   R   G GLGLSI +  +  H G + + S+    +T   R P
Sbjct: 781 KLFDKFYRVDNSETRKIGGTGLGLSICKEIVKHHNGTIDVESTIGAGSTFTIRFP 835


>gi|262403778|ref|ZP_06080336.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
 gi|262350282|gb|EEY99417.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
          Length = 830

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/427 (20%), Positives = 171/427 (40%), Gaps = 36/427 (8%)

Query: 380 SVYKSSETHKDTWHLPN--GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL---VK 434
             +       +   L N   + + +   S+  G  I+ F+       LE  +  L    K
Sbjct: 275 RWWLQKRIQSEIETLMNYTHKLMDLDTKSDFEGSKIYEFDYFG--RTLEQSFRRLANKEK 332

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
              +  +       ++   GR+   NP+ +               I+ +      ++   
Sbjct: 333 QFEDLFNFALSPTMLWNTAGRLIRMNPSAQ---------------IQFLREDSQNHFLFE 377

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLTFVNVTD---SVR 550
                   +IT +  + KS       +   V  +++ P+    Q +       D      
Sbjct: 378 ILEKQLLPMIT-YAAQGKSPSEVTTEVDGRVYRWNLSPIKVEGQIISIITQGQDVTSIAE 436

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +    L  +Q ++V
Sbjct: 437 AEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PLTDEQREHV 493

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             + +S   LL ++NDILD + ++ G  ++  S   LN+L+  + +      ++  + + 
Sbjct: 494 AVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLNELVYAIDRIYRPLCNDKGLELV 553

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNN 726
           V S+      V +D+ R+ QI   +L+NA+ F+ +GS  ++    +       +  V + 
Sbjct: 554 VDSNITSAVLVRSDQVRINQILFNLLNNAIKFTHQGSIRVVLELIEGDPLAQLVIQVVDT 613

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E     +F  FV       R   G GLGL+IV S + +  G + +SS     T  
Sbjct: 614 GIGIREQDLTVIFEPFVQAESTTTREYGGSGLGLAIVHSLVEMLSGQLHVSSEYGRGTRF 673

Query: 785 NCRIPSK 791
             ++P +
Sbjct: 674 EIQLPIE 680


>gi|70731183|ref|YP_260924.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68345482|gb|AAY93088.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 775

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/413 (21%), Positives = 159/413 (38%), Gaps = 8/413 (1%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV--DLETKYNTLVKVQGE 438
           V +  +   +   L  GQ L          G +        Q+  + E       +    
Sbjct: 214 VTRVQQVQGNAQRLALGQPLRPQAPEQDEIGQLGTRLVEAGQLLAERERALRDNEERLRL 273

Query: 439 TIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            ID + + G+      GR+   N     +    E  +                + +    
Sbjct: 274 IIDGVKDYGIFALDTAGRVTTWNVGAERIKGYSEQEIIGRHFSLFYLPEECPQHPDMALR 333

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           +  A      +  R    G+    S  +                  ++TD   AE AL  
Sbjct: 334 EATAHGHYMEEAWRCRKDGSRFWASVVITAQYDASGALRGFSKITRDITDRRAAEIALGT 393

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E    A   K+ F+  +S+ELR+PL  I+GF  LL        N+ Q   V +I  + 
Sbjct: 394 AREEAESASRAKSEFLSRMSHELRTPLNAILGFAQLLDMDS----NAGQRPQVGHILRAG 449

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+N++LD+A ++AG + LN   + L  +L+E    ++    +  I +  + +   
Sbjct: 450 QHLLGLINEVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAADAGITLAPLPELAA 509

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            S  +ADRQRL+Q+   +LSNA+ ++  G  V +  A +      SV + G+ I  +  +
Sbjct: 510 DSGVIADRQRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEASRLRLSVLDTGAGITAERLE 569

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  F       +  G GLGL++  S + +  G + + S+    +     +P
Sbjct: 570 RLFKPFERLDADPRVEGTGLGLALSRSLLEMMDGSLGVQSTPGSGSCFTLELP 622


>gi|254489970|ref|ZP_05103165.1| hypothetical protein MDMS009_301 [Methylophaga thiooxidans DMS010]
 gi|224465055|gb|EEF81309.1| hypothetical protein MDMS009_301 [Methylophaga thiooxydans DMS010]
          Length = 1177

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 165/380 (43%), Gaps = 29/380 (7%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    I+   + +     +G+I+  N A   + K     ++       + +       E+
Sbjct: 368 LYSALIEGSKDAILTLSTEGKIQDWNEATYHVLKLPPFDITDRQLEDILDSDERALLTEN 427

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDS-----------------VLEYSIIPLPNAQ 537
               L      + D +  +  G L  LS S                 + + +   L   Q
Sbjct: 428 IAACLAGKSTATLDIDYHTSNGDLLALSVSLSPIHKDKQTIIGASTIIRDITEQILDKKQ 487

Query: 538 TMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 ++ + VR     L +      +A  +K+ FV +VS+E+R+PL  I+G  +LLK 
Sbjct: 488 LENLNSSLEEQVRTRTEELEKAKNEAIEASNMKSGFVANVSHEIRTPLNGILGMHNLLKR 547

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +LN KQ  Y++  + S+  LL L+NDILDL+ ++AG +++    I L D  ++   
Sbjct: 548 E---NLNEKQESYLQMATQSAKSLLMLINDILDLSKIEAGKLEIESLPINLIDSFSQAAN 604

Query: 657 SIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           S+A +  + N+ I +  +D K    + D  R+ QI + ++SNA+ F+ KG  ++  A  +
Sbjct: 605 SMAVRAMDKNVEIVLDLADIKHTVVIGDDLRIRQILNNLISNAIKFTDKGEIIVSAATTE 664

Query: 716 N---GDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
           +      I   SV++ G  I +     +F  F        R   G GLGLSIV +  +L 
Sbjct: 665 DVAGARVILDVSVQDTGVGIDKAKLNQLFKAFSQEDSSTTRKYGGTGLGLSIVSNLCSLM 724

Query: 769 GGHVSISSSDEGVTTINCRI 788
            G   + S     +T + R+
Sbjct: 725 NGECHVESEKNVGSTFSFRL 744


>gi|159901161|ref|YP_001547408.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894200|gb|ABX07280.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 533

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 150/377 (39%), Gaps = 32/377 (8%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
               L    N   +        + EG+ +   DGRI   NP   + +            +
Sbjct: 179 ENAQLIADINDERRKFEGAFTAMEEGLILVDGDGRIHFVNPQALAFFAVTPPVPEHLNEL 238

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                             LF     + D  R  +       +D  +  + IP+ + Q   
Sbjct: 239 SQ------------QVLGLFKEAQQTGDSVRAEIVLEQNPTTDLAIHIAYIPIFSEQEDW 286

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             + + D  R           L++ D +K  FV + S+ELR+PL NI  +  L +  K  
Sbjct: 287 WTIVLHDITR-----------LKEYDRLKTQFVANASHELRTPLANIKLYARLAQQVKAK 335

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   K  QY+E I++ +  L  +V D+L L  +D+G+M  +   + + +LL  + Q+   
Sbjct: 336 T---KLPQYLETIASEAGRLEAIVEDLLTLTRLDSGLMHSSPEWVDIIELLRNLAQTYRP 392

Query: 661 KMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---- 715
                  R+        L        + +++   +LSNA+ F+  G TV L   R     
Sbjct: 393 LAEAREQRLIFQECTSNLPKLWLAPDQFMRVVVNLLSNALKFTPTGGTVTLSVDRQTQAG 452

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               + +V + G  I  +  + +F RF   ++  +  G GLGL+IV   + L GG +S++
Sbjct: 453 QAGTLITVADTGPGIAPEHQQRLFERFYRGSNPTES-GSGLGLAIVRELLALMGGTISVA 511

Query: 776 SSDEGVTTINCRIPSKE 792
           S+    +   C +P ++
Sbjct: 512 STVGQGSQFTCWLPLEQ 528


>gi|239908525|ref|YP_002955267.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798392|dbj|BAH77381.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 669

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/508 (19%), Positives = 190/508 (37%), Gaps = 45/508 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            T + +L     I+  L  AIA    +  +   N  +       L +L    S  E+L  
Sbjct: 35  ATSDKRLARLTSIIAALDQAIAFIAPSGVIAEINDRY-------LTWLGR--SRAEVLG- 84

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHLPNGQTLHVIVTSNPRGG----T 412
            R      +  +++        +++    H           + + V +      G     
Sbjct: 85  ARLEVLDLDTEDYQA--AAFLDLFRRGVAHAPVSFESRIGARDVTVKLQPVIEDGMFAGL 142

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I    ++T  V+         +   + I      + +   D  +   N  F ++     +
Sbjct: 143 IVSLIDVTPLVEARLGVEREKRFLEQVITIAGAAICIVNRDDVVVTINDEFTAITGYTRD 202

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +      ++ +  +     + + G           D   +  Q T+       L      
Sbjct: 203 QALGRPRVQLLRESPLSPCSTAPG-----------DGAVQKRQSTIAARGGKRLTILKNA 251

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            P            +S      L        +A  +K++F+ ++S+E+R+PL  I+G + 
Sbjct: 252 APILGADGQITGGIESFVDVSDLIRAQVQAEEASRMKSAFLANMSHEIRTPLNAIMGLSQ 311

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL      +L  +Q + VE + A+   LL ++NDILD + ++ G +++  + + ++ LL 
Sbjct: 312 LLLR---ANLPPQQRECVETMRAAGEGLLVILNDILDFSRIEMGRLEIRPAPMDIDRLLE 368

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           EV++ +A    +  + + +  D  L   V  D  RL QI   +LSNA+ F+  G  V L 
Sbjct: 369 EVRRVMAQAADQQGLTLAIERDPSLPRVVLCDPVRLKQILLNLLSNAIKFTPSG-RVTLS 427

Query: 712 AARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
           A R   +          F+V + G  I  ++ + +F  FV           G GLGLSI 
Sbjct: 428 ARRATANLGHEGPPRVTFAVHDTGPGITPEVRERIFEPFVQTDDAVARNPGGTGLGLSIS 487

Query: 762 ESFINLHGGH-VSISSSDEGVTTINCRI 788
              + L GG  + + +S    +  +  +
Sbjct: 488 NRLVELLGGSGLELDTSPGRGSVFSFTL 515



 Score = 45.7 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 80/273 (29%), Gaps = 15/273 (5%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           +       ++    +  +LD  +     +G I   N  Y             A  E   L
Sbjct: 33  QNATSDKRLARLTSIIAALDQAIAFIAPSGVIAEINDRYLTWLGRSRAEVLGARLEVLDL 92

Query: 244 FKEEIKKRMISSSALEKNFCETVS--TLEHGNNKSYKIVRVLNSFGEAGI---AIDVSKE 298
             E+ +                VS  +     + + K+  V+     AG+    IDV+  
Sbjct: 93  DTEDYQAAAFLDLFRRGVAHAPVSFESRIGARDVTVKLQPVIEDGMFAGLIVSLIDVTPL 152

Query: 299 ITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +     +      L  +      AI I +++  +   N  F  +           P    
Sbjct: 153 VEARLGVEREKRFLEQVITIAGAAICIVNRDDVVVTINDEFTAITGYTRDQALGRPR--- 209

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            ++ LR +   P                 ++   K    L N     ++       G I 
Sbjct: 210 -VQLLRESPLSPCSTAPGDGAVQKRQSTIAARGGKRLTILKN--AAPILGADGQITGGIE 266

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            F +++  +  + +     +++   + ++S  +
Sbjct: 267 SFVDVSDLIRAQVQAEEASRMKSAFLANMSHEI 299


>gi|116754787|ref|YP_843905.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
 gi|116666238|gb|ABK15265.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
          Length = 761

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 127/714 (17%), Positives = 251/714 (35%), Gaps = 96/714 (13%)

Query: 131 TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190
              LRK+G    +V          ++ R +G    L I  L   YS L +     ++L +
Sbjct: 86  VRFLRKDG---SIVPVLITGAPRIVDNRPAGG--ILVITDLTDYYSVLRQLKNSQRRLMD 140

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANIS-----------------YKKNTETEGIVF 233
                  + + +       D  G ++  N +                 Y+      G   
Sbjct: 141 -------ILEFMPDPALGMDMDGRVIIWNRALEALTGVRKEEMLGKGNYECAIPFYGYRR 193

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL---EHGNNKSYKIVRVLNSFGEAG 290
                     + E + +   +           V        G++   K   + +S G   
Sbjct: 194 PVLADLVLHGYDESMSREYRNLQRDGDVLTAEVFIPTFGPEGSHLWLKAALIYDSEGRIE 253

Query: 291 IAI----DVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI- 341
            AI    D+++ +   + L+        I+  +   +  FD++  L F N ++   +   
Sbjct: 254 GAIEVIRDITENVKRLNALSLSEARYRSIVEGMPFLVCRFDRDGVLTFVNENYCNYFGFR 313

Query: 342 -----DLAFLATNPSNDE--LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
                  +FL   P ++   +LE  R   +   +  + T+      V +  E     W  
Sbjct: 314 REDIVGRSFLELIPEDEREAVLERFRGLTR---ERPYVTY---THRVKRGEEIRWQRWTD 367

Query: 395 P-----NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
                 NG+ L              + E++T + ++E              +  + G+A+
Sbjct: 368 RAIFGQNGEVLEYQS----------LGEDITAEKNMEDALRESEHRFRVLAESTAAGIAI 417

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              D R    N A   +     + L        +    + +  +     L          
Sbjct: 418 M-RDERFVYVNRAGEEMSGYSRDELIGAPVWMVVHPEDAAWLKKMYSRKLRGEP----TP 472

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALRKAD 566
            R   +   +      +EY+   L     M    T +++T+  +AE  L    E+L +  
Sbjct: 473 PRYEFRIITKNGDVRWVEYASGTLELGGEMALIGTLIDITERRQAEEELRRFKESLEQMV 532

Query: 567 EIKN-----------SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           E +            SFV  VS++LR PL  I G   L +         K  + +  +  
Sbjct: 533 EERTAELEQRNAEIESFVYTVSHDLRRPLITISGLAGLAEFDLEKGNLEKARESLRTVQR 592

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   +  L+ DIL+L+ +  G +      +    L+ E    +A  + + +  ++V    
Sbjct: 593 SCENMDALLRDILELSRI--GKVTNPPEDVPFELLVREAIDQLAEAVKKRSAELRV--AE 648

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            + +   DR+RL++    ++ N++ ++ + +  +++    +G  +F V++NG  IPE   
Sbjct: 649 GMPTVRVDRERLVEALVNLIDNSIKYTGEDTRPVIEIFYRDG--VFCVRDNGIGIPESQR 706

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + VF+ F     +    G G+GLSIV+  I +HGG + I S     T     +P
Sbjct: 707 EKVFDLFYKVDPKSD--GTGVGLSIVKRIIEVHGGRIWIESDGCSWTAFCFTLP 758



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 99/270 (36%), Gaps = 22/270 (8%)

Query: 309 YEILHNLTVAIAI---FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           ++IL++L   + +    D+   +++ N +F  +    L+ +    +     +FL   + +
Sbjct: 12  FQILNSLGQGVVVSKVVDERWIIEYANPAFAHMLGFSLSEIVGKSTE----DFLHPDD-I 66

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMFENL 419
           P  L  +  +         + +++  +   +G  + V++T  PR       G I +  +L
Sbjct: 67  PLLLESRAKRLEGL-----TTSYEVRFLRKDGSIVPVLITGAPRIVDNRPAGGILVITDL 121

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGT 478
           T    +  +     +   + ++ + +       DGR+ + N A  +L     E  L  G 
Sbjct: 122 TDYYSVLRQLKNSQRRLMDILEFMPDPALGMDMDGRVIIWNRALEALTGVRKEEMLGKGN 181

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           +   I     R    +D   +      S   E ++LQ   ++L+  V   +  P  +   
Sbjct: 182 YECAIPFYGYRRPVLADL--VLHGYDESMSREYRNLQRDGDVLTAEVFIPTFGPEGSHLW 239

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEI 568
           +   +      R E A+    +       +
Sbjct: 240 LKAALIYDSEGRIEGAIEVIRDITENVKRL 269


>gi|115351649|ref|YP_773488.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115281637|gb|ABI87154.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 705

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 6/252 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           + + +  R +  L         A+  K+ F+  +S+E+R+P+  ++G T+LL+ ++   L
Sbjct: 1   MMLDEIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTR---L 57

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            SKQ ++V+ +  S   LL +++DILD + ++AG + L      L+ LL++V   +    
Sbjct: 58  TSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPNA 117

Query: 663 HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               + +    +D        D  RL QI + +L NA+ F+  G   +  A  D+G  +F
Sbjct: 118 QRKELELVYQRADSVPQRMRGDPVRLRQILTNLLGNAIKFTEHGHVALSAAYSDDGRIVF 177

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + ++G  I  D+   +F  F         +  G GLGL I      + GG +++ S+  
Sbjct: 178 KIADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLGLVISRQLAEMMGGTLALDSTPG 237

Query: 780 GVTTINCRIPSK 791
             +      P +
Sbjct: 238 KGSVFTVTTPFE 249


>gi|325262479|ref|ZP_08129216.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
 gi|324032311|gb|EGB93589.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
          Length = 1294

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/582 (20%), Positives = 227/582 (39%), Gaps = 56/582 (9%)

Query: 244  FKEEIKKRMISSSALE-KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
              E        +   +  N    +   E G    +K++ V           DV+  +TV 
Sbjct: 575  LNEPALAAFRRNDTEQILNCYIKLPKEEKGRYVQFKVILVETPDTG-----DVTGILTVT 629

Query: 303  D--QLTHTYEILHNLTVA---IAI---FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            D  + T T  ILH L+V      I    D + Y    N    +   +     + +    E
Sbjct: 630  DITEQTITNRILHQLSVTSYDFVIDLDLDSDNYTVLTNNKNSD--RLPETSGSHSGRIRE 687

Query: 355  LLEFL---RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-- 409
            +L+ +   +   +  E L     +  +      +  +  T    + +T ++ V+S     
Sbjct: 688  MLDKIIVPKDRAQYAESLEAGEIRRRLKEKGSYTFAYSLTDEKGDIRTKNMTVSSIDLRL 747

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETID-----HLSEG-VAVFGPDGRIKLSNPAF 463
            G    +  ++T  +    +   L+ +   T D     ++S G + ++  +  +K  +P F
Sbjct: 748  GRVCLVRTDITESL---REQQGLLNMIAYTFDLACFINISLGTLTMYTRETVLKNLSPYF 804

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +       +             R +  S   +      + +D               
Sbjct: 805  FERYDDTVEGFAANYGTEEERDEAVRQFRVSTMLERLKEKPSGYD-------FVFPYNGS 857

Query: 524  SVLEYSIIPLPNAQTML-----TFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQ 574
            + L Y  I +               +VTD + AER     L +  E   +A+  K+ F+ 
Sbjct: 858  AKLRYKQINVLWGDENHRTICLVRADVTDMLAAERQTKRSLEKALELAEEANRAKSEFLS 917

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             +S+++R+P+  I+G T L           K S  ++ IS SS  LL+L+ND+LD++ ++
Sbjct: 918  AMSHDIRTPMNAIMGMTAL--ACAHIDDQDKVSDCLKKISISSKHLLSLINDVLDMSKIE 975

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693
               + L    I+L+ L++++   I  +     I   V +D      F  D  RL QIF  
Sbjct: 976  RSQITLGRMKILLSRLMHDLAAIIEPQARAAGIHFYVRTDDICNEKFYGDVLRLNQIFIN 1035

Query: 694  ILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            ILSNA+ F+ +G TV             D+  + F++++ G  I  +  + +F  F  ++
Sbjct: 1036 ILSNAIKFTPEGGTVDFMVEELPAVRCEDHVRYRFTIRDTGVGIKAEFLEHIFEPFTRSS 1095

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  G GLGLSI +  ++L GG +++ S +   T     +
Sbjct: 1096 NTSRVEGTGLGLSITKGLVDLMGGVITVESKELQGTVFRVEL 1137



 Score = 42.2 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 113/346 (32%), Gaps = 51/346 (14%)

Query: 122 HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVS---GSCAFLRILSLDGIY--- 175
              + +    ++ R    +    A   +   + +  R+    G   ++    L+G     
Sbjct: 181 DDALNIIYEQDRERVTAAA---QAALLSGEVLDVSYRMRHKDGGLIWI---HLNGRRMGP 234

Query: 176 -SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANISYKKNTETEGIVF 233
            SE          +S+   +F+ + + +   ++  D+   D+L+ N       +      
Sbjct: 235 LSESTRFYAVFTGMSSETRLFQSIANEMADNIYIIDKDNYDLLYVNE-----PQKGSPCN 289

Query: 234 QKAIGES--RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN---KSYKIVRVLNSFGE 288
           ++++G+     L+ +E        +  E +  E    +   +      ++          
Sbjct: 290 RESVGKKCYDALYGKEGPCEFCCLNKYEPDGQEHEMKISGLDRYFSTRFRETDWNGIPAY 349

Query: 289 AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI--FDQNRYLQ--FHNRSFVELWE 340
                + ++E+    +     +    ++ NL   IA+  F ++  +   F +  F EL  
Sbjct: 350 VKYVRETTEEVKTRREKERLEQYFQTVVKNLPGGIAVVKFGEDGSMVPEFISEGFAELTS 409

Query: 341 IDLAFLATNPSNDELLEFLR-SANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQ 398
           +         S DE  +  R  A       + +    ++     S ++  +  + L  G 
Sbjct: 410 M---------SLDETWDLYRTDALAGVHDEDRERIHASLTEYIHSGDSQYEIVYRLKRGD 460

Query: 399 --------TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
                   TL +I   +       ++ +++ ++  + +     K  
Sbjct: 461 GGYVWVKNTLSLIEAESGEKKFYAVYHDVSGEIAEKEQLRQQYKEM 506


>gi|189423629|ref|YP_001950806.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419888|gb|ACD94286.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 893

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/524 (17%), Positives = 183/524 (34%), Gaps = 58/524 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID------LAFLATN 349
             E  +  Q      +       +   D +    + N  +  +  +         +L   
Sbjct: 243 QAEDDLRAQEALYASLTTASPTGVFQADLHGAYCYVNDRWSAIAGLPFEQALGEGWLQAL 302

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-- 407
              D +        ++ E+     W+ ++        + +  +  P+G    V   S   
Sbjct: 303 HPEDRV--------RVSEE-----WQHSVAG--DCPFSLEFRFVRPDGTVAWVYGQSAEI 347

Query: 408 -----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                   G +    +++++   E           E     S+ +A          SNP 
Sbjct: 348 FDSKGGIVGYVGTITDISIRKKAEATLAEQALFLRE-----SQSIAHLAGWK----SNPD 398

Query: 463 FRSLWKTEENRLSPGTHIRNIAA--TCSRYYNESDGWDLFAAIITSFDDE---RKSLQGT 517
              L  T+E             +   C RY++  D   +  A+  +  +    + S +  
Sbjct: 399 SDLLSWTDEMYHMLDHPQDEPISHVACFRYFDPQDLPMVEKALQEAMRNGTPFKLSCRMV 458

Query: 518 LELLSDSVLEYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                    ++  I   +         T  ++++  + E  L    E        K   +
Sbjct: 459 SARGRRFWADFRCIGRMDGPDGGYIGGTLQDISEHKQIEELLISAKEMAEATSRAKTELL 518

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PL  ++G   LL+ +    L++ Q +Y++ +  S+T  L LVND+LDLA +
Sbjct: 519 ATLSHELRTPLNGVMGGVQLLEMT---DLSADQEEYLQMVRTSATNELALVNDLLDLAGL 575

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFS 692
           +A  +K+  +   L + +        + +    + +       L    + D +RL QI S
Sbjct: 576 EASGLKVESTPFNLLESIKLAITLHRSALETRGLPLVTSLPESLAQLVIGDGRRLTQIVS 635

Query: 693 KILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            +L NA+ F+ +G  + L A               V + G  I E   + +F  FV    
Sbjct: 636 NLLGNAIKFTEQGG-ISLAADCTPCGGSELRLQVRVSDTGIGIAEKDLQRIFEPFVQADM 694

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              RR  G GLGL+I        GG + + S     ++    +P
Sbjct: 695 SSTRRFGGTGLGLAICHRLAERMGGSIRVDSIPGEGSSFTLELP 738



 Score = 37.6 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 42/305 (13%)

Query: 30  IAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGK 89
           +AGM+  TI   I L +QR S   +         ++  Q + Y SL T +       D  
Sbjct: 221 LAGMIGITIASAIYLRQQRLSQQAED--------DLRAQEALYASLTTASPTGVFQADLH 272

Query: 90  DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
                +  +      +P        +   L     +++S+  +        F L      
Sbjct: 273 GAYCYVNDRWSAIAGLPFEQALGEGWLQALHPEDRVRVSEEWQHSVAGDCPFSLEFRFV- 331

Query: 150 DCAIKIEGRVSGSCAFL------------RILSLDGIYSELAETTLKCKKLSNHISVFKV 197
                   R  G+ A++             I+   G  ++++        L+      + 
Sbjct: 332 --------RPDGTVAWVYGQSAEIFDSKGGIVGYVGTITDISIRKKAEATLAEQALFLRE 383

Query: 198 LFDSLDFLVWHRDQAGDIL-WANISYKKNTETEGIVFQKAIGESRKLFKEEIKK----RM 252
                    W  +   D+L W +  Y      +            + F  +        +
Sbjct: 384 SQSIAHLAGWKSNPDSDLLSWTDEMYHMLDHPQDEPISHVA--CFRYFDPQDLPMVEKAL 441

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVR------VLNSFGEAGIAIDVSKEITVNDQLT 306
             +      F  +   +     + +   R        +     G   D+S+   + + L 
Sbjct: 442 QEAMRNGTPFKLSCRMVSARGRRFWADFRCIGRMDGPDGGYIGGTLQDISEHKQIEELLI 501

Query: 307 HTYEI 311
              E+
Sbjct: 502 SAKEM 506


>gi|253680781|ref|ZP_04861584.1| two-component sensor histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253562630|gb|EES92076.1| two-component sensor histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 781

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 158/385 (41%), Gaps = 22/385 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP---AFRSLWKTEENRLSPG 477
            +           K     I+   + + +   +G     N     F +L        +  
Sbjct: 371 EKHHTRNALIESEKRLRILINAFPDLICLKDGNGHWLEVNKSTIKFFNLKNFHWKNKTTQ 430

Query: 478 THIRNIA-----ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
             I  +            YN  D   L    + ++ DE     G        VL+   +P
Sbjct: 431 DIINTLTYNSTYKDHLEKYNHFDSLALIRKTMVNYKDEFSLSNGE-----KLVLDIFKVP 485

Query: 533 LPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           + +        +    ++T  ++AE      NE L +  +++  F  ++S+EL++PL  I
Sbjct: 486 IFDYNDNLTGMVTIGHDLTAHIKAEENTKLLNEML-EYQKLRVEFFANISHELKTPLNLI 544

Query: 588 IGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +     ++     + N     +Y   I  +S  L+ +VN+++D+  +D+G  +++     
Sbjct: 545 LSAVQYIELVHNKNFNLDDFCKYTNIIKQNSYRLVRIVNNLIDITKIDSGYFQIHAENYN 604

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + +L+ ++    A+ ++  N+ +   ++ +      D   + +I   +LSNA+ F+  G 
Sbjct: 605 IVELVEDICLYCASYINSKNLELIFDTETEEKIISCDALIMERIILNLLSNAIKFTPSGG 664

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
            + +     + +   SVK+ G  IPE+  + +F RF+           G G+GLS+V++F
Sbjct: 665 RITVNIYDKDNEIQISVKDTGIGIPENRQELIFERFIQVDKSLSRNHEGSGVGLSLVKAF 724

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +NLH G++ + S     +     +P
Sbjct: 725 VNLHNGNIKVKSKVGYGSEFLITLP 749


>gi|161519742|ref|YP_001583169.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
 gi|189354079|ref|YP_001949706.1| chemotaxis protein methyltransferase [Burkholderia multivorans ATCC
            17616]
 gi|160343792|gb|ABX16877.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
 gi|189338101|dbj|BAG47170.1| chemotaxis protein methyltransferase [Burkholderia multivorans ATCC
            17616]
          Length = 1380

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/514 (16%), Positives = 180/514 (35%), Gaps = 39/514 (7%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            ++           + I+ +  +A    D+   ++    +   ++ +  + L         
Sbjct: 747  ARIEDTAKANDDLHNIIASSEIATVFVDKEIRIKRFTPNATAIFNLIDSDLG-------- 798

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS------NPR 409
                RS   +   L + T  +++   ++S    +       G+   + +        +  
Sbjct: 799  ----RSLFHITHSLRYPTLADDVRQSFQSLRLIEREIESEAGRWYLIRLLPYRTADDHID 854

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWK 468
            G  I +  ++T +   E       +          +  + +   +G I   N     ++ 
Sbjct: 855  GAVITLI-DVTDRHHAEEAARAGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFG 913

Query: 469  TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              E+ +  G  +  I     R+          AA     DDER              +  
Sbjct: 914  YTEDEM-IGQDVELIYEPNDRHARVPAHEREVAAREGRADDER-----WHRTKDGRRIFC 967

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERAL------------TEKNEALRKADEIKNSFVQHV 576
            S +  P A T             +R L                E    ++++K+ F+  +
Sbjct: 968  SGVVTPIADTSFNGFAKIVRDLTQRKLSEDANREALAREQAAREQALSSNQLKDEFIAVL 1027

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+ELR PL  I    ++L             +  E I  +      +++D+LDL+ +  G
Sbjct: 1028 SHELRHPLNLIGVRAEMLPRLPETRDIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTG 1087

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             + L  S + L  +L  +  +     H   + +      +    +AD  R  QIF  ++S
Sbjct: 1088 KLALELSRVDLTAVLRTIVDTCEADAHARGLVLTAELPDEPAIALADPIRCEQIFWNLMS 1147

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
            NA+ F+  G  ++++   +       V ++G  I  D    VF+ F        R G+G+
Sbjct: 1148 NALKFTHAGGRIVVRLTHEARMLRVDVIDDGQGIDRDTLPHVFDMFRQAPRDRTRGGLGI 1207

Query: 757  GLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
            GL++V   + +H G +S +S      TT+   +P
Sbjct: 1208 GLALVRQLVEMHDGRISAASEGPGRGTTMTVWLP 1241


>gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 683

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 20/301 (6%)

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           +   L AA++   D      +  LE L   V + +      A T+ T     +  RA+  
Sbjct: 54  EHEQLMAAMLGERDARLAEQRTYLERLEQEVQDRTREVRDYAVTLETANKALEQARAQSE 113

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +            +K+ F+ ++S+E+R+P+  IIG T+L+  +    L+++Q +Y++ + 
Sbjct: 114 IAA---------RLKSEFLANMSHEIRTPMNGIIGMTELVLDTH---LSTEQREYLDLVK 161

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
           +S+  LL L+NDILD + ++AG + L      L ++L+   + +  +    ++ +   I 
Sbjct: 162 SSAESLLGLLNDILDCSKIEAGKLNLEAIPFSLGEILHATLRPLTLQAGRKDLTLTWEIL 221

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGS 728
              L + V D  RL QI   ++SNA+ F+ +G        I++A         SV + G 
Sbjct: 222 PDVLDTLVGDPTRLRQIVVNLVSNAIKFTERGGIAVRAQAIVEADLRQCVLYCSVTDTGI 281

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +    +F+ F  V  +   Q  G GLGL+I    + + GG + + S     +T + 
Sbjct: 282 GIPPEKRHVIFDPFIQVDGSTTRQYGGTGLGLTITAHLVTMMGGRIWVESEPGLGSTFHF 341

Query: 787 R 787
            
Sbjct: 342 T 342


>gi|104780548|ref|YP_607046.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
 gi|95109535|emb|CAK14236.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
          Length = 918

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 327

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVI 672
             S+  LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   +  + ++
Sbjct: 328 EKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLV 387

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V+     D+ D       SV++ G 
Sbjct: 388 YRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDDQDDTVQLRISVQDTGI 447

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 448 GLSPQDVRTLFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWI 507

Query: 787 RI 788
            +
Sbjct: 508 SL 509


>gi|46914623|emb|CAG21400.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum SS9]
          Length = 903

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 146/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++ +   R         +   ++   D  +  +      LS+  +E          
Sbjct: 177 RPISHMVSVVDRIRRGHLDIRIEGQLLGELDTLKNGINAMAISLSEYHIEMQQSIDQATS 236

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 237 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 294

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+S Q  Y+  I  S+  LL ++NDILD + ++AG + L        + L+EV +
Sbjct: 295 R----LSSSQHDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFTESLDEVMR 350

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
            +A   HE  + + +  D ++ +  + D  R+ Q+ + ++ NA+ F+ +G+    V LKA
Sbjct: 351 LLAPSAHEKGLELTLKVDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKA 410

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
           ++D   +  F+V++ G  I E     +F  F         +  G GLGL I +  +   G
Sbjct: 411 SKDESIELQFTVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVTQMG 470

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 471 GEISLTSRLHQGSTFWFSL 489


>gi|169342707|ref|ZP_02863748.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
 gi|169299213|gb|EDS81283.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
          Length = 571

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 161/382 (42%), Gaps = 43/382 (11%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +  Q+++   ++          +  +  GV  F  D  + + NP  + ++      +
Sbjct: 222 FNYMAEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEII 281

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPL 533
                            N+   +     ++ +F DE+  ++  +    D  +L+     +
Sbjct: 282 G----------------NKLLDYITDKEVLKAFFDEKDRVEIEVNYNDDPKILKIRKASI 325

Query: 534 PNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            N      T++   ++TD  + E               +++ FV ++S+EL++PLT+I G
Sbjct: 326 INEPEIIGTVVVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKG 371

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F + L+       +  +++++  I   S  L  L+ DIL L  ++     +      +++
Sbjct: 372 FAETLR---YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDE 427

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + +V   +  +  +  + I + ++      + D+ +  Q+   ++SN++ ++ KG  V 
Sbjct: 428 EIEKVYMLLNDQAKKKGVEIFLDTNSN-CVLMGDKDKFKQMLLNLVSNSVKYTEKGGKVR 486

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +++   + + I  +++NG  I  +    +F RF         +  G GLGL+IV+  + L
Sbjct: 487 VESYNRDMNLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRL 546

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
             G ++++S     T I   IP
Sbjct: 547 FDGDINVTSELGVGTKIVITIP 568



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           +     +   ++S+    NF + V      +    +I R+  SF      ++++ E   +
Sbjct: 183 ILNPLKELEQLTSTIASGNFHKRVKINSKDD----EIQRLGKSFNYMAEQLEITMERFKD 238

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            Q      IL ++   +  FD++  +   N    +++ I    +        LL+++   
Sbjct: 239 KQ-NGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNK-----LLDYITDK 292

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWMFEN 418
             L    +            +      +  +  + + L +    I+      GT+ + ++
Sbjct: 293 EVLKAFFD------------EKDRVEIEVNYNDDPKILKIRKASIINEPEIIGTVVVIQD 340

Query: 419 LTVQVDLE 426
           +T    LE
Sbjct: 341 ITDIKKLE 348


>gi|153833582|ref|ZP_01986249.1| MmoS [Vibrio harveyi HY01]
 gi|148870109|gb|EDL69056.1| MmoS [Vibrio harveyi HY01]
          Length = 641

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 142/294 (48%), Gaps = 24/294 (8%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--------------ALTEKNEALR 563
           LELLS +V ++S   +P+  T+       +    ER               + +  +   
Sbjct: 179 LELLSGAVSDFSGGHVPSKVTLPKRWFFDEVSLLERKYNRSVDRVSEHQLEIEQARDKAE 238

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A+  K+ F+  +S+E+R+P+  IIG   LL  +K   L+ +Q  +V  I++SS  L+ +
Sbjct: 239 VANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTK---LDEQQKDFVSIINSSSNSLMVI 295

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           ++DILD + ++AG ++L  +T  L DLL+EV +    K  +  +++    D +L      
Sbjct: 296 IDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPLEVKG 355

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+ S +LSNA+ F+ +G   +    +    D     F V ++G  I ++  ++V
Sbjct: 356 DMGRLKQVLSNLLSNAVKFTERGHVKLMVSQVSREADVAGVHFRVVDSGIGIAKENQQTV 415

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F +F        R   G GLGL+I  S + + GG + ++S     +     IP 
Sbjct: 416 FEKFQQADGSTTRKYGGTGLGLAICSSLVEVMGGEIRLTSEPGLGSYFEFTIPL 469


>gi|228924209|ref|ZP_04087480.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835427|gb|EEM80797.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 613

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N V         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|114776750|ref|ZP_01451793.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
           ferrooxydans PV-1]
 gi|114552836|gb|EAU55267.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
           ferrooxydans PV-1]
          Length = 841

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 10/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  + L    +A   A+  K+ F+ ++S+ELR+PL  IIG +DLL ++   SL+++Q ++
Sbjct: 179 RLIQKLHHAIDAAEAANRAKSQFMANMSHELRTPLNGIIGMSDLLYST---SLSNEQKRF 235

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S+   L+L+  ILD+A ++AG ++L +    L+ LL+        +  E  IRI
Sbjct: 236 TFVIKESAYHQLSLIERILDMAKLEAGKLELLHEPFDLHQLLHGTVALFEGQAKEKAIRI 295

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724
            +  D ++  + + D + + QI   I+ NA+ F+  GS  +     +    N    F+V 
Sbjct: 296 ALRYDPEIPFALIGDPKHIKQILLNIVGNAVKFTEHGSVTLKVEASEVTEKNVVLQFTVT 355

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + ED+   +F +F        RR  G GLG +I ++   L GG +S+ S     T
Sbjct: 356 DTGIGMSEDVQGRIFEQFTQADASITRRFGGTGLGTTIAKNLTELMGGSISLKSRAGAGT 415

Query: 783 TINCRIPS 790
           T    +P 
Sbjct: 416 TFTINLPL 423


>gi|172056770|ref|YP_001813230.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989291|gb|ACB60213.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 854

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 162/364 (44%), Gaps = 16/364 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           + N         +D + E V    P       N     L+   +   +    ++    T 
Sbjct: 487 EMNREKTKTERILDSIREAVIYIEPGKDEVFVNRPLYDLFPELQYGAAKNETLQGCLNTI 546

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
               +E + +  +   I   +  + SLQ ++      +  Y        +T+        
Sbjct: 547 RAVVDEPEIFARYMEGILRGEVPKDSLQFSIHQQVVFIQFY-------VETIEVEGIRKG 599

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           ++   R +T++ E     D +K+  V  VS+ELR+PL++I GFT+L+   K+    SKQ 
Sbjct: 600 TMLVLRDVTKETEM----DRLKSELVSTVSHELRTPLSSIYGFTELMLNRKMDL--SKQD 653

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y++ I + +  L NLVND LD+  ++A I       + L  LL E  Q  A     + I
Sbjct: 654 KYLKTIHSETERLSNLVNDFLDVQRMEARIQSYQKGLLNLQPLLEETTQFYAASTTNHTI 713

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             + ++D       AD +++ Q+ + +L+NA+ +S  G  + +    D+    F+V++ G
Sbjct: 714 TFRSLTDA-CPLIEADEEKMKQLMNNLLNNAVKYSPFGGNIEVVLEADHHHVQFAVRDEG 772

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP+     +F++F    +   R   G GLGL+I +  +  H G +++ S ++  +T  
Sbjct: 773 IGIPKSALAKLFDKFYRVDNSDSRKIGGTGLGLAICKEIVEGHDGEITVESVEKQGSTFT 832

Query: 786 CRIP 789
            ++P
Sbjct: 833 VKLP 836


>gi|316935933|ref|YP_004110915.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315603647|gb|ADU46182.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 873

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 162/380 (42%), Gaps = 16/380 (4%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F+NL  + +LE +   +  +  +   + S+ +      GR+      F  + K   N L+
Sbjct: 225 FDNLRAKFELERQTEIISLLLKDFQANASDWLWQTDAQGRLVHVPERFVEVAKLPPNLLT 284

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                  I   CS     + G     A   + +D    +   +   +  +   +  P+ +
Sbjct: 285 GALLSDVIGMLCSEDGRCAMGVAAKMAQREAMND---FVVHVVIGGAPRLWSLTAKPVFD 341

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+              ER    + E     +  K+SF+  +S+E+R+P+  ++G  + L 
Sbjct: 342 AKGEFAGYRGVGRDVTER---WRAEQAEAENRAKSSFLAMMSHEIRTPMNGVLGLANSLL 398

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +K   L+++Q Q V  I  S   LL ++NDILDL+ ++AG ++   +      L+  V+
Sbjct: 399 ETK---LDAEQQQAVTTIRDSGDDLLRILNDILDLSKLEAGRLEFEQADFSPATLVESVR 455

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
             I  ++    I +K+  D +L      D  R+ Q+   + SNA+ F+ +GS  ++L   
Sbjct: 456 AIIEPEIRGKGIELKIDIDPRLPPSLSGDAARIRQVLLNLASNAVKFTERGSIAIVLTCV 515

Query: 714 RDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           + N       + V + G  I  D   S+F  F        RR  G GLGL+I    +   
Sbjct: 516 KRNDSHATVEWQVTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQM 575

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG ++++S +   +T    +
Sbjct: 576 GGDIAVTSREGEGSTFRFSL 595


>gi|148550789|ref|YP_001260228.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148503208|gb|ABQ71461.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 1143

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/317 (24%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 479 HIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNA 536
            +++      R   E     +         +++ ++L+ +   L    +E          
Sbjct: 383 RLQDALEETQRQAGELQAQSEELRVSNEELEEQGRALRESQVRLEQQQVELEQTNSQLEE 442

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q         +  RA  AL  K   L +A + K+ F+ ++S+ELR+PL +++  + LL  
Sbjct: 443 QAQTLETQRDELERAGAALGAKAHELEQASQYKSDFLANMSHELRTPLNSLLILSKLLGD 502

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G+L+ +Q +Y   I +S   LL L+NDILDL+ ++AG +++   T+ L  L  ++++
Sbjct: 503 NSQGNLSDEQIKYANTIESSGNDLLTLINDILDLSKIEAGHIEIRPETVALQRLTGDLRR 562

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +      +  +   + +SD    +  +DR RL QI   +LSNA  F+ +G   +     D
Sbjct: 563 TFDPLAEKKGLGFDISLSDDCARTIESDRMRLEQILKNLLSNAFKFTERGQVSLAIERVD 622

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
           +    F+V + G  I  +   S+F  F         +  G GLGLSI      L GG ++
Sbjct: 623 DAFIRFAVSDTGIGISAEQQASIFEAFHQADATISRKFGGTGLGLSISRELARLLGGRIA 682

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +T    IP 
Sbjct: 683 LESRPGEGSTFTLTIPL 699


>gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1358

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 11/243 (4%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L    +A   A+  K  F+ ++S+ELR+PL  I+GF++LL+    G ++  Q   ++ I
Sbjct: 876  ELQIAKDAAEAANRAKTIFLANMSHELRTPLNAILGFSNLLRE---GDVSEWQRNDLDII 932

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
            + S   LL+LV+++LD+A ++AG   L  +   L  ++ +V   +  +     + +    
Sbjct: 933  NRSGEHLLSLVDEVLDVAKIEAGRGVLEIAPYDLAGMVRDVMDMMGARAQMKGLALLHAD 992

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGD--FIFSVKNN 726
            S G      AD  RL Q+   ++ NA+ F+  GS V L+       D+G     F V++ 
Sbjct: 993  SSGLPRYVRADGPRLRQVLINLVGNAIKFTPSGS-VTLRLDAGCVDDDGRFSLTFYVEDT 1051

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            G  +  +  + +F  FV       ++G GLGL+I    + + GG VS+ S+    +    
Sbjct: 1052 GCGVAPEDHERIFEPFVQVGPAATKKGSGLGLAITRQLVEMMGGTVSVESTPGKGSRFRV 1111

Query: 787  RIP 789
             +P
Sbjct: 1112 EVP 1114


>gi|225569244|ref|ZP_03778269.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM
           15053]
 gi|225162043|gb|EEG74662.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM
           15053]
          Length = 812

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 190/505 (37%), Gaps = 61/505 (12%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + D++  L + N  + E             S +E      +   L  + + K W+E    
Sbjct: 39  LLDEHFTLVWANEFYYEFTGW---------SKEEYETTFHNRPDLYYKKDPKEWQELTNV 89

Query: 381 VYKSSETHKDTW------HLPNGQTLHVIVTSN-----PRGGTIW--MFENLTVQVDLET 427
           VY +    +  +         NG  + + +++        G  +   +  N+   V ++ 
Sbjct: 90  VYNAIAAGEKGYKLLSRFRRKNGDYIWIQLSTQFSDEYIDGHQVAYTVMTNIDDVVRMQK 149

Query: 428 KYNTLVKVQGETIDHLSEGVAV---FGPDGRIKLS--NPAFRSLWKTEENRLSPGTHIRN 482
           +       Q  T + L  G        P   + L   N  F   +   ++      H  N
Sbjct: 150 E-------QSVTYESLP-GFVAKYRIDPHLNLTLLEGNSRFMEYFGAGQDS-DNSLHKEN 200

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS---------DSVLEYSIIPL 533
           I        ++ +  +  +     F  + +S  G +  L          +    Y  I +
Sbjct: 201 ITKNLDVILSQRE--NFLSGKPAHFVMKVQSRTGQMLWLQVNASCVDWQEGCPIYLAIFI 258

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                               AL +       A++ K  F+  +S+E+R+P+  I G T +
Sbjct: 259 DITDITELRQMQKKLTEQADALRDALSVAEHANQAKADFLSRMSHEIRTPMNAITGMTTI 318

Query: 594 LKTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
                  ++N +Q     +E I++SS  L+ L+ND+LD++ +DAG MK+ + T  L ++ 
Sbjct: 319 ----AAANINDRQRVADCLEKIASSSKHLMTLINDVLDMSKIDAGKMKIAHETFDLQNVT 374

Query: 652 NEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +   I  +     ++  V + D        D  RL Q+   +LSNA+ F+ +G  V L
Sbjct: 375 ESITAIIYPQADAKGLKFSVPLVDITDTVLTGDALRLNQVLINLLSNALKFTPEGGAVRL 434

Query: 711 KAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
           +  +           F+V + G  + ++  K +F  F   +    R   G GLG+ I ++
Sbjct: 435 EIRQLQKKAGRVRLRFTVSDTGIGMSQEFMKHLFTPFEQESTATGRSAGGTGLGMPITKN 494

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            + L GG VS+ S     +T    +
Sbjct: 495 LVTLMGGTVSVRSEPGKGSTFIVEL 519


>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 818

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             +    E+ + A+  K+ F+  +S+E+R+P+  ++G T+LL  +    L+ +Q+++VE 
Sbjct: 170 EEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNT---DLSKEQARFVES 226

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL ++N+ILD + ++AG M+L      L+ L  +     A    +  I +   
Sbjct: 227 VRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQLAADAVAMFAEDAAKKGIALSCR 286

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSI 730
            +  L   F  D  RL Q+   +L NA+ F+ +G+  + +  AR+      +V++ G  I
Sbjct: 287 IEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLAREPALVRVTVEDTGIGI 346

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +  + +F+ F         +  G GLGL+I +    L GG + +SS      + +  
Sbjct: 347 SRESQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGVMELSSEPGEGASFSFT 405


>gi|190575485|ref|YP_001973330.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
 gi|190013407|emb|CAQ47041.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
          Length = 1168

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 160/391 (40%), Gaps = 30/391 (7%)

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---------SNPAFRSLWKT 469
            +  +V++  +   ++ +  +T   +++G      D RI           SN     L   
Sbjct: 647  VIERVEV-RRNEQVLDLTHDTPLQIADG----DRDLRIVARLLSFADSASNSYRYRLAGY 701

Query: 470  EENRLSPGTHIRNIAATCS----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            + + +  G     + +       R   ++   D   + + S   E +        LS  +
Sbjct: 702  DPDWVEVGPAGERLFSRLPPGSYRLEVQARSADHVWSRVQSL--EFRVQPPWWRSLSGLL 759

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +  SI  L  +     +        A +    K E   +A   K  F+ ++ +E+R+P+T
Sbjct: 760  VLASIALLLTSWFAWLYRRRLQRRHAYQLALHKQELAEQASAAKTRFLANLGHEIRTPMT 819

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             ++G ++LL  S    L+ +Q  Y + I  +   LL+L+ND LDLA +++G ++L     
Sbjct: 820  GVLGMSELLLAS---PLDPQQRGYTQSIRHAGEHLLHLINDALDLARIESGRLELQSKPF 876

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
             L+ LL ++   +     +  +R  + +    G     D  R+ QI   +LSNA+ F+S+
Sbjct: 877  ALSCLLQDLAALMGPLAAQKGLRFTLDNQLPPGLQATGDAMRVRQILLNLLSNAVKFTSR 936

Query: 705  GSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLS 759
            G T+ L A  D       F V++ G  I ++  + +F RF          Q  G GLGL+
Sbjct: 937  G-TITLHARSDGELRALHFEVRDTGPGISQEQQQRLFRRFEQADGARTAAQYGGSGLGLA 995

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            I         G + + S     T     +P 
Sbjct: 996  ICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1026


>gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris
           marina MBIC11017]
          Length = 834

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 138/302 (45%), Gaps = 27/302 (8%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           E++  DL        + E +     LE L+ S LE  +                   +  
Sbjct: 314 EAEKVDLLQKQNRHLEQEVQHRTAELEQLNQS-LEIHV------------------EQRT 354

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            AL    +   +A+  K+ F+  +S+ELR+PL  I+GF+ L+   +  +++++Q   ++ 
Sbjct: 355 AALEAARQKADQANRAKSEFLASMSHELRTPLNAILGFSQLMSEDQ--AISTQQQNTLQI 412

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LL L+ND+LD++ ++AG   LN +   L+ LL  +      K     +++ + 
Sbjct: 413 INRSGEHLLELINDVLDMSKIEAGRTTLNPADFNLHGLLQSLYDMFNLKAQSKGLKLALK 472

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNN 726
            D  L  F+  D  +L Q+   ++ NA+ F+  G   +    A   GD      F+V+++
Sbjct: 473 LDDHLPQFIHGDESKLRQVLINLIGNAIKFTEAGEVSITAGMAEQTGDGELSLTFAVEDS 532

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I  D  + +F+ F+       ++G GLGL+I   F+ L  G +S+ S     +    
Sbjct: 533 GPGIAPDEVERIFDPFIQAKSSQAQQGTGLGLAISAQFVRLMKGDISVCSKLSRGSIFRF 592

Query: 787 RI 788
            I
Sbjct: 593 TI 594


>gi|89902313|ref|YP_524784.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89347050|gb|ABD71253.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 1007

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/666 (17%), Positives = 229/666 (34%), Gaps = 64/666 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIG 238
           +       L      F V   S+   V   D A  +   N   ++ T  T+     + + 
Sbjct: 185 QLHQANLTLRESEEKFAVTLHSIGDAVIATDAAARVTLLNPLAERLTGWTQAQASGRPVD 244

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETV------STLEHGNNKSYKIVRVLNSF------ 286
           E   +  +E +       A E     T+      + +   +     I             
Sbjct: 245 EIFTIINKETRLSATVPVA-ETLAHGTIQGLANHTVVIARDGSECDIADSCAPIRDRDGQ 303

Query: 287 --GEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIA-IFDQNRYLQFHNRSFVELW 339
             G   +  DV++E      L         IL+ +   I  I+ +   ++  N +   ++
Sbjct: 304 VIGAVLVFRDVTEEYAAQQALRDSTALIQTILNTVADGIITIYARGGMIKTVNPAAERMF 363

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 L    +   L+  L    +    L + +  +   +     E         +G  
Sbjct: 364 GYSGIELVGQ-NFSLLIPELDQDQRNG-SLEYYSASDEARAAGLGREVLG---RRQDGSV 418

Query: 400 L--HVIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
               + V+    GG      +  + T +   E        +Q    +  +         G
Sbjct: 419 FPMEMAVSEMWLGGERYFTGILRDTTARKQAEEALLQAGALQSAIFNSANFSSIATDAKG 478

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDD 509
            I++ N     +       +       +I+        ++  +   G  +          
Sbjct: 479 VIQIFNVGAERMLGYTAAEVMNKVTPADISDSKEVIARAKALSLELGTQIEPGFEALVFK 538

Query: 510 ERKSLQGTLELL------SDSVLEYSIIPLPNAQTML-------TFVNVTDSVRAERA-- 554
             + ++   EL       S      S+  L +AQ ++       T       V AERA  
Sbjct: 539 ASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQGVIIGYLLIGTDNTARKRVEAERAVL 598

Query: 555 ----------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                     L    +A  KA+  K+ F+  +S+ELRSPL  I+GF  L+++  +    +
Sbjct: 599 DRALRDKNVELESARQAADKANLAKSEFLSSMSHELRSPLNAILGFAQLMESG-VPPPTA 657

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q   ++ I      LL L+N+ILDLA +++G + L+   I L D+L + +  I  +  +
Sbjct: 658 TQKASIDQILHGGWYLLELINEILDLALIESGKLSLSMEPIALPDVLLDCQAMIEPQAQK 717

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSV 723
           ++IRI            ADR R+ Q+   ++SNA+ ++  G TV +   +        SV
Sbjct: 718 SDIRISFPQFNAPCFVNADRTRVKQVIVNLMSNAIKYNRVGGTVEVTCKKVAAQRLRISV 777

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +++G  +  +    +F  F       G   G G+GL + +  + L GG +   S     +
Sbjct: 778 RDSGEGLSAEKVTQLFQPFNRLGQEVGSEEGTGIGLVVSKRLVELMGGEIGAQSIVGTGS 837

Query: 783 TINCRI 788
                +
Sbjct: 838 VFWFEL 843


>gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1888

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 135/788 (17%), Positives = 288/788 (36%), Gaps = 110/788 (13%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQL---HQ 101
            +R+R +  ++         E+     +   LLT +    +++  K             + 
Sbjct: 917  LRERQAALRERKHVE---QELRLANERLQYLLTSSP--VVIYSSKKTLGNFSTTFISKNV 971

Query: 102  RIDIPQTDTDLLS-FENWLK---FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG 157
            +  +     + +     WL          +S+   +L ++         +     +  +G
Sbjct: 972  KAMVGYEAQEFVENPNFWLHHVHPEDIELISEKFSQLVEQ------EYTSYEYRWLHADG 1025

Query: 158  RVSGSCAFLRIL--------SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
                    +R++           G ++++ +  L    L      +++L ++    ++H 
Sbjct: 1026 TYHWFYEKMRLIRDETGNPIECVGYWTDINDAKLAELALQTGRQRYQLLAETSPACIFHT 1085

Query: 210  DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
            D  G++L+ N  +   +E  G   ++++G           +  +  +  +    + +   
Sbjct: 1086 DVDGNVLYFNQRW---SEISGCNLEESLGTGWTKAVHPDDREQLLLTWNQARVAKVMYKY 1142

Query: 270  EHG----NNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
            EH     ++    ++              G  G   D+++     + L  + E       
Sbjct: 1143 EHRFLCDDSTVVWVICQALPEFRDDGEIKGYIGTITDITERKLAEEALRESAE------- 1195

Query: 318  AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL--EFLRSANKLPEQLNWKTWK 375
                  + R +    +   +  +++  F AT     ++L  + +      P+      W 
Sbjct: 1196 ------RERAIAQVIQRMRQTLDLETIFAATTQELRQVLNCDRVVVYRFNPQ------WN 1243

Query: 376  ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                S     E+  + W      +L     ++P      + E +  Q     K       
Sbjct: 1244 GEFVS-----ESVGNGW-----ISLIEEHNNDPN-----LTEGVLQQGRCLAKILDSGDN 1288

Query: 436  QGETID--HLSEGVAVFGPDGRIK--LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            Q E  D   + +G+   G   R    + N  F        + +S     +  A       
Sbjct: 1289 QAEDADMQAIQDGIYAQGATFRCVPDIYNAEF------HPSYISLLERFQAKAYIIVPIL 1342

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
              S  W L A+   S  D R+   G + ++         I       +     +  + R 
Sbjct: 1343 YGSQIWGLLASYQNS--DSRQWKPGEINIVVQ-------IGNQLGVALQQAQLLAQTQRQ 1393

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
             +AL E       A+  K+ F+ ++S+ELR+PL  I+GFT ++   +  +L+++  Q + 
Sbjct: 1394 SQALQEAVITADAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDR--ALSTEHQQNLA 1451

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I+ +   LLNL+NDIL+++ ++AG + LN ++  L  LL  +++ +  +     + +  
Sbjct: 1452 IINRAGEHLLNLINDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGLELNF 1511

Query: 672  ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---------GDFIF 721
                 L  ++ AD  +L Q+   +L NA+ F+  G  V+L+ A +N             F
Sbjct: 1512 EYTSYLPQYIQADESKLRQVLLNLLGNAIKFTDTG-RVMLRVAMENMGEKILPHPPHLFF 1570

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             V + G  I       +F  F      R  ++G GLGL+I   ++ L GG +S++S    
Sbjct: 1571 EVTDTGRGIAPQEINLLFEAFGQTETGRKSQQGTGLGLAISRKYVELMGGDISVTSIIGE 1630

Query: 781  VTTINCRI 788
             +T    I
Sbjct: 1631 GSTFAFDI 1638



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 55/451 (12%), Positives = 127/451 (28%), Gaps = 46/451 (10%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI----------------- 220
            L E     ++L+   +     F      +   D     +  N                  
Sbjct: 782  LIERKTLEQELALREARLNAFFTGAPVGMNIVDNQLRFVQINQVLAEINGISQEAHIGKT 841

Query: 221  ---SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
               +  K        +Q+ +     +  +E+    I    + ++F  +   +   +++  
Sbjct: 842  IHEALPKIASVVEPFYQQVLLTGEPILNQELSAASIKQPDIIRHFLVSYFPIPGEDDRLS 901

Query: 278  KIVRVLNSFGEAGIAID-----VSKEITVNDQLTHTYEILHNL--TVAIAIFDQNRYLQF 330
             +  VL    E   A+      + +   V  +L    E L  L  +  + I+   + L  
Sbjct: 902  GVGTVLVEISELQAALRERQAALRERKHVEQELRLANERLQYLLTSSPVVIYSSKKTLGN 961

Query: 331  HNRSFVE-----LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             + +F+      +   +      NP+    L  +   +       +    E  ++ Y+  
Sbjct: 962  FSTTFISKNVKAMVGYEAQEFVENPNF--WLHHVHPEDIELISEKFSQLVEQEYTSYEYR 1019

Query: 386  ETHKDTWHLPNGQTLHVIV--TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
              H D  +    + + +I   T NP    +  + ++      E    T  +      +  
Sbjct: 1020 WLHADGTYHWFYEKMRLIRDETGNPIE-CVGYWTDINDAKLAELALQTGRQRYQLLAETS 1078

Query: 444  SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
               +     DG +   N  +  +              + +          +      A +
Sbjct: 1079 PACIFHTDVDGNVLYFNQRWSEISGCNLEESLGTGWTKAVHPDDREQLLLTWNQARVAKV 1138

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            +  ++        T+  +    L            + T  ++T+   AE AL E  E  R
Sbjct: 1139 MYKYEHRFLCDDSTVVWVICQALPEFRDDGEIKGYIGTITDITERKLAEEALRESAERER 1198

Query: 564  KADEIKNSF---------VQHVSYELRSPLT 585
               ++                 + ELR  L 
Sbjct: 1199 AIAQVIQRMRQTLDLETIFAATTQELRQVLN 1229


>gi|269104721|ref|ZP_06157417.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161361|gb|EEZ39858.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 570

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 119/236 (50%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +    ++     F+  +++ELR+PL  ++G  +LL  +   SL+S+Q + ++ ++ S  
Sbjct: 202 QKRAENSERSTRDFLAMINHELRTPLNGLLGAAELLADT---SLSSEQKKLLDTLNNSGE 258

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +L  ++ND+LD + + AG+++L       + ++N +   +  +  E  + + ++ D  + 
Sbjct: 259 LLRAIINDLLDYSKISAGMLELIIKPFNPHQIINNLADIMRYQAQEKQLLLTLVIDNTVP 318

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              + D  R+ QIF  +++NA+ F+++GS ++     ++   IF VK+ G  I E     
Sbjct: 319 NCLLGDEDRIKQIFVNLINNAIKFTNRGSIILNTTWCED-KLIFQVKDTGIGITEGQQLK 377

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F       QR   G GLGL+I +    L  G + + S  E  +T    +P K
Sbjct: 378 LFKPFSQVDISSQRIHEGTGLGLAICKQLCELMSGEIKLISIPEQGSTFTVILPLK 433


>gi|265751905|ref|ZP_06087698.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263236697|gb|EEZ22167.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 616

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 175/391 (44%), Gaps = 25/391 (6%)

Query: 403 IVTSNPRGGTIWMFENLT----VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           I++       ++ + ++T    V++ LE K   L +++         G+  +    R   
Sbjct: 100 IISKYDEEHFLFQYRDITGRSVVRLKLEKKQKDLCEIEKAA----RIGLWAYDSSTR--- 152

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
               F +         +     +        Y +  D       +  +  ++  S     
Sbjct: 153 ----FFTYSGYTRIFCNDEEQKQISIDEYMNYMHLDDKARFSQWLEENLKEKDASNTINY 208

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +LL D       I   + +  +    +   ++    +  K E   +++++K++F+ ++S+
Sbjct: 209 KLLIDGKTVNMRIKTYHKEVYMQRTVLEGYIQNTSEIVWKAE---RSNQLKSAFLANMSH 265

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GF+ ++  ++      ++ QY + +  ++  L  L+N+ILDL+ +++G+M
Sbjct: 266 EIRTPLNAILGFSRIIAETENA---EERLQYYDIVEKNNMRLQELINEILDLSKIESGMM 322

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           + NY+ + L  L  +VK + + +     + +             DR RL Q+FS ++ NA
Sbjct: 323 EFNYAPVSLYTLCEDVKNTYSFRCQP-GVELVFEESDPSLVISTDRNRLFQVFSNLIGNA 381

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
             F++KGS +         + +F + + GS I +D    +F+RF+   +  Q +G GLGL
Sbjct: 382 TKFTAKGS-ISFGYKLTEKEIVFHIADTGSGISDDKIDKIFDRFIMANN--QVQGTGLGL 438

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI +  +   GG +++ S  E  TT    +P
Sbjct: 439 SISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|212691341|ref|ZP_03299469.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855]
 gi|237712212|ref|ZP_04542693.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|237726358|ref|ZP_04556839.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|212666094|gb|EEB26666.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855]
 gi|229434884|gb|EEO44961.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|229453533|gb|EEO59254.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 616

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 175/391 (44%), Gaps = 25/391 (6%)

Query: 403 IVTSNPRGGTIWMFENLT----VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           I++       ++ + ++T    V++ LE K   L +++         G+  +    R   
Sbjct: 100 IISKYDEEHFLFQYRDITGRSVVRLKLEKKQKDLCEIEKAA----RIGLWAYDSSTR--- 152

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
               F +         +     +        Y +  D       +  +  ++  S     
Sbjct: 153 ----FFTYSGYTRIFCNDEEQKQISIDEYMNYMHLDDKARFSQWLEENLKEKDASNTINY 208

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +LL D       I   + +  +    +   ++    +  K E   +++++K++F+ ++S+
Sbjct: 209 KLLIDGKTVNMRIKTYHKEVYMQRTVLEGYIQNTSEIVWKAE---RSNQLKSAFLANMSH 265

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GF+ ++  ++      ++ QY + +  ++  L  L+N+ILDL+ +++G+M
Sbjct: 266 EIRTPLNAILGFSRIIAETENA---EERLQYYDIVEKNNMRLQELINEILDLSKIESGMM 322

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           + NY+ + L  L  +VK + + +     + +             DR RL Q+FS ++ NA
Sbjct: 323 EFNYAPVSLYTLCEDVKNTYSFRCQP-GVELVFEESDPSLVISTDRNRLFQVFSNLIGNA 381

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
             F++KGS +         + +F + + GS I +D    +F+RF+   +  Q +G GLGL
Sbjct: 382 TKFTAKGS-ISFGYKLTEKEIVFHIADTGSGISDDKIDKIFDRFIMANN--QVQGTGLGL 438

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI +  +   GG +++ S  E  TT    +P
Sbjct: 439 SISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|209695938|ref|YP_002263868.1| hybrid sensory histidine kinase BarA [Aliivibrio salmonicida
           LFI1238]
 gi|208009891|emb|CAQ80204.1| response regulator, histidine kinase VarS [Aliivibrio salmonicida
           LFI1238]
          Length = 929

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 14/318 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++ +   R         +   +    D  +  +      LSD  +E          
Sbjct: 201 QPISHMVSVVDRIRRGHLNVRIENKLHGELDTLKNGINAMAISLSDYHVEMQQSIDQATS 260

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 261 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 318

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               SL+  Q  Y++ I  S+  LL ++NDILD + ++AG + L        D L+EV  
Sbjct: 319 ----SLSDNQKDYLQTIERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVS 374

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +A   HE  + I +  D ++ S  + D  R+ Q+ + ++ N++ F+ KG+  + ++   
Sbjct: 375 LLAPSAHEKGLEITLKIDPRIPSGLIGDPLRIQQVLNNLVGNSIKFTEKGNIDISIELKH 434

Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            N DFI   F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 435 LNDDFIDVQFVVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMG 494

Query: 770 GHVSISSSDEGVTTINCR 787
           G + +SS     +T    
Sbjct: 495 GEIGLSSRLHQGSTFWFT 512


>gi|153805851|ref|ZP_01958519.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
 gi|149130528|gb|EDM21734.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
          Length = 396

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 168/384 (43%), Gaps = 24/384 (6%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E+L+       +     K     +D L + + VF  D  I         L  +       
Sbjct: 24  EDLSSMQSYPVQERFREKYSTRILDALPDMLTVFDHDANII-------ELASSPSTNHVE 76

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPL 533
           G +  NI  +  +     + ++     +       +S     +L+ D +L   E  I PL
Sbjct: 77  GINADNITHSNVKDILPPEAYESVRQNMDRVILTGESSTSRHDLMLDGILHHYENRIFPL 136

Query: 534 PNAQTMLTFVNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            N   +    ++++   AE+        L        ++D +K++F+ ++S+E+R+PL  
Sbjct: 137 DNEYLLCMCRDISEQWNAEQTNKKQQKELEAARIKAEESDRLKSAFLANMSHEIRTPLNA 196

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF+ L+  ++     +++ QY E I  +S ILLNL NDILDL++++A  +  N   I 
Sbjct: 197 IVGFSKLVIDAEC---TNEKEQYAEIIERNSEILLNLFNDILDLSSLEADSLSFNIRPIK 253

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L D+  +++Q    K+ +N  ++ +           D  R++QI S +LSNA  F+ KG 
Sbjct: 254 LIDICLQLEQQFCYKV-KNGTKLILDDVDTELYVSGDWNRIIQIISNLLSNAAKFTPKGE 312

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            +            F VK++G  IP +   ++F RF         +G GLGL++    + 
Sbjct: 313 -IHFGYREKEDFVEFYVKDSGIGIPAERVATIFQRF--GKINDFVQGTGLGLTLCRMLVE 369

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
             GG + + S +   +     +P 
Sbjct: 370 KMGGRIWLRSQEGKGSRFYFTLPL 393


>gi|144900532|emb|CAM77396.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 640

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 143/298 (47%), Gaps = 12/298 (4%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV-TDSVRAERAL 555
            D+   ++T  DD+ ++    +E L     +Y +    +   +   V    +   AE+AL
Sbjct: 89  PDMAVVVLTGNDDDAQA----IEALKHGAQDYLVKGRDDGFILSRVVRYAVERKNAEQAL 144

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E  +   +A ++K+ F+  V +E+R+PL  I+G   LL  +    L+ +Q  + E + +
Sbjct: 145 REARDKAEEAAQVKSLFLATVGHEIRTPLNGILGMARLLLDT---PLDQRQKVFAETVVS 201

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S  +LL LVNDILD + ++A  + L  ++  L +++ +++  +A +  +  + +      
Sbjct: 202 SGELLLGLVNDILDFSRLEADGLTLETTSFDLLNMVEDIRLLMAPRAADKGLTLGCRFPP 261

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPED 733
           ++      D  RL Q+   ++ NA+ F++ GS  + +     +G   FSV + G  IPE+
Sbjct: 262 EVQRQVSGDPLRLRQVLLNLVGNAIKFTANGSVMIAVAKEEASGMVRFSVSDTGIGIPEE 321

Query: 734 MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +FN F         +  G GLGL+I +  + L GG +   S+    T    RIP
Sbjct: 322 ARDILFNEFSQADSSVARRYGGAGLGLAICKRLVTLMGGAIGFDSTPGSGTQFWFRIP 379


>gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 918

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 12/243 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E  R  +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q+  VE I++
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDRGQAACVETIAS 451

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S   L++++NDILD A +++G ++L      L +LL++       +  E  +R+ +  D 
Sbjct: 452 SGNALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAREKRLRLHLGLDR 511

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSS 729
           G       D  RL Q+ + +L NA+ F+++G  V L+  R          ++SV ++G  
Sbjct: 512 GVPRRLNGDPTRLRQVLTNLLGNALKFTAEGH-VALRVQRRFDEAGRERLLYSVSDSGIG 570

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I      ++F  F        RR  G GLGL+I    + + GG + +SS     T  +  
Sbjct: 571 ISAQAQATLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVD 630

Query: 788 IPS 790
           +P 
Sbjct: 631 LPL 633


>gi|326797637|ref|YP_004315456.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
 gi|326548401|gb|ADZ76786.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
          Length = 1203

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 131/649 (20%), Positives = 251/649 (38%), Gaps = 52/649 (8%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G+  ++ E       L       K +    +   W  +   D +  N  +      E   
Sbjct: 305 GLIQDIHEQKNTECNLIKERQRLKYVLQGANLGTWEWNVQTDEILFNEQWAMLLGYELNE 364

Query: 233 FQKAIGESRKLFK-----EEIKKRMISSSALEKNFCE-----------TVSTLEHGNNKS 276
            Q   G + + F      ++ K  M S  + E +  +           TV  L  G   S
Sbjct: 365 VQPITGSAFQRFIYPGDFDKAKNAMESYFSGETDIYQCEMRMIHKAGHTVWMLVQGKILS 424

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHN 332
           +            G  ++ +KE  + + L  +      ++ ++  ++ I  ++     + 
Sbjct: 425 WD--DKGAPLWMYGTHLENTKEKQLQENLRRSESYAHSLITSIPDSMFILSKDGEFLDYK 482

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDT 391
               +L+     FL  N       +   +    L E+   ++ + +    +  S    + 
Sbjct: 483 SHEKDLYTKPNLFLGKN-----FKDIFPAKLGLLIEEKIEQSIRTDSLVEFTYSLILHEQ 537

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
                 +     V        I +  + TV    E +   L       +D+   G+A+  
Sbjct: 538 E-----KYYRARVVPFEGDKIIVLCRDDTVNFIAERELRALNAKFKSIVDNSPIGIALVE 592

Query: 452 PD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD- 509
              G  +  NPA         + L       + +    R Y+E+D   L         D 
Sbjct: 593 YQTGIFQEVNPAIPMFTGYTRDELLR----LSFSDITPRAYHEADKLQLKQLHKNGRFDN 648

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADE 567
            E++ L+   + +  SV   +   +   + +LT   +++     +RAL    E    A+ 
Sbjct: 649 YEKEYLRKDGKRVWVSVTGVAFTDVSGEKKILTIVQDISQQKEQQRALKAAKEQAEIANN 708

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+ ++S+E+R+PL  IIGFTDLL  S    L+  Q +Y+  +  S   LL+L+ND+
Sbjct: 709 AKSEFLANMSHEMRTPLNAIIGFTDLLLKS---PLSEAQKEYMRAVFQSGQSLLDLINDL 765

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           LDL+ +++G + L + ++ L  L  +V + +  + ++  +   +I   +L   V +D QR
Sbjct: 766 LDLSKIESGKLDLVFESVDLIKLAKQVVEILKYQANKKGLDFNLILSPELPPLVLSDGQR 825

Query: 687 LLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           L Q+   +LSNA+ F+ +GS      V    +       FSV + G  I E+  + +F  
Sbjct: 826 LRQVLFNLLSNALKFTERGSVDLDIQVEQHLSAKEVIIRFSVTDTGIGIAEENREKIFEA 885

Query: 742 FVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           FV        +  G GLGL+I    ++L G  + + S     +T    +
Sbjct: 886 FVQENSSIIKRFGGTGLGLTISNRILSLMGSQLKLRSETGTGSTFYFDL 934



 Score = 40.7 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 100/293 (34%), Gaps = 35/293 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           L + G + E  +     + L    S    L  S+   ++   + G+ L    S++K+  T
Sbjct: 432 LWMYGTHLENTKEKQLQENLRRSESYAHSLITSIPDSMFILSKDGEFL-DYKSHEKDLYT 490

Query: 229 E-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
           +     G  F+        L  EE  ++ I + +L +    T S + H   K Y+   V 
Sbjct: 491 KPNLFLGKNFKDIFPAKLGLLIEEKIEQSIRTDSLVE---FTYSLILHEQEKYYRARVVP 547

Query: 284 NSFG-EAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVE 337
                   +  D +     E  +         I+ N  + IA+ + Q    Q  N +   
Sbjct: 548 FEGDKIIVLCRDDTVNFIAERELRALNAKFKSIVDNSPIGIALVEYQTGIFQEVNPAIPM 607

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLP 395
                   L     +D        A+KL            +  ++K+     ++  +   
Sbjct: 608 FTGYTRDELLRLSFSDITPRAYHEADKL-----------QLKQLHKNGRFDNYEKEYLRK 656

Query: 396 NGQTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +G+ + V VT       +     + + ++++ Q + +       + Q E  ++
Sbjct: 657 DGKRVWVSVTGVAFTDVSGEKKILTIVQDISQQKEQQRALKAAKE-QAEIANN 708


>gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 1196

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/313 (25%), Positives = 147/313 (46%), Gaps = 16/313 (5%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             + A        +   +     I + ++E +  Q  L L S+  LE     L     ++
Sbjct: 450 EELQAQHRELEGLNAELEAQTQRIQTSEEELRVQQEEL-LQSNQELEERTSLLEEKNQLI 508

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              N+    +AE+        L ++ + K+ F+ ++S+ELR+PL +I+  + L+  +K  
Sbjct: 509 QERNLDIQHKAEQ--------LEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENK-- 558

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +  +Y E I +S   LL L+++ILDL+ ++AG MKL ++ + + ++  +++   + 
Sbjct: 559 ELDKEYIEYAEVIQSSGQGLLGLIDEILDLSKIEAGKMKLEFTDVNITEVATDMRSLFSP 618

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
                N+ + +  +  +     DR RL QI   +LSNA+ F+S G  V L   +D+    
Sbjct: 619 LAKNKNLDLVIDVESDISGINTDRMRLEQILKNLLSNAIKFTSTG-KVALTVKQDDAGKA 677

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            +F V + G  IP D    +F  F       +R   G GLGLSI      L GG + ++S
Sbjct: 678 ILFKVTDTGIGIPLDKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELSKLLGGEIELTS 737

Query: 777 SDEGVTTINCRIP 789
            +   +     +P
Sbjct: 738 KENVGSEFTLALP 750


>gi|149197352|ref|ZP_01874403.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
           HTCC2155]
 gi|149139370|gb|EDM27772.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
           HTCC2155]
          Length = 1182

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 14/250 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +   E  E    A+  K+ F+ ++S+E+R+P+  IIG   L    K G    K  +Y+  
Sbjct: 541 KQSQELKEEAEAANTAKSEFLANMSHEIRTPMNAIIGLAQLGLKDKSG---EKHEEYLYK 597

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  SS  LL ++NDILD + ++AG M +      LN++L +V  ++  +M   N+ +   
Sbjct: 598 IKQSSENLLTIINDILDFSKIEAGKMTMEKIPFKLNEVLEKVGGTLRGRMTNRNVDLIFP 657

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGS 728
                   V D  RL Q+   +L NA+ ++ KG  ++     +   D+    FSV++ G 
Sbjct: 658 GPLS-YKLVGDPLRLEQVLLNLLGNALKYTRKGHVILSVDEKELKEDSICLQFSVEDTGI 716

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + +     +F  F        R   G GLGLSI +  +   GG + + S     +    
Sbjct: 717 GLSDTQRNRLFQPFAQGDTSTTRKYGGTGLGLSISKKIVKYMGGEIWLDSMPHKGSVFCF 776

Query: 787 R----IPSKE 792
                IP ++
Sbjct: 777 TANFEIPLED 786


>gi|119485363|ref|ZP_01619691.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119457119|gb|EAW38245.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 402

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 118/247 (47%), Gaps = 2/247 (0%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R  + +  +N  L +A  +K+ F+  +S+ELR+P+  I+GF+ LL       L  
Sbjct: 150 NRELERQRKQIERQNRKLAEASRLKSQFLATMSHELRTPMNAIMGFSQLLLRQYPDPLVP 209

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q   V+ I  ++  LL ++N++LD + ++AG  +L  +   L   +    Q + +   E
Sbjct: 210 QQLDMVQRIFNNAQHLLTMLNEVLDFSKIEAGHFQLEPTEFNLAQFVELTTQELRSLAVE 269

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + ++V  + +    + D+  + Q+   ++SNA+ F+  G   I    + N   I +VK
Sbjct: 270 KQLTLEVNINLEEPMIINDQNSIRQVLVNLISNAIKFTDSGGVWINVQEQANDQLIIAVK 329

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  D  + +F  F        R+  G GLGL+IV+S + L  G V++ S     +
Sbjct: 330 DTGVGIASDHLQEIFEAFRQINQTNTRKHYGTGLGLAIVDSLVKLMHGQVTVESQLGCGS 389

Query: 783 TINCRIP 789
                 P
Sbjct: 390 IFQVEFP 396


>gi|119945803|ref|YP_943483.1| fused multi-sensor protein [Psychromonas ingrahamii 37]
 gi|119864407|gb|ABM03884.1| PAS/PAC sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 882

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 16/370 (4%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             K     IDH+ +G+        ++  NPA   ++  +   +  G+    +       +
Sbjct: 228 SEKHLSSVIDHMLDGLITIDAQCIVQSFNPAAERIFGYKSEEVVGGSVNILMPEPDYSEH 287

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD---S 548
           N+     L   I  +    RK + G  +  S   L+ SI  +  ++T   F  V D    
Sbjct: 288 NDYLKRHLDTGITNTTGISRKVV-GKRKDGSTFPLDLSINEMHLSETHRFFCTVRDISVR 346

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            + E+ L    E   +  + K+SF+  +S+E+R+PL  ++G  ++L  S    L+ +Q  
Sbjct: 347 QQHEQQLIAAKETAEQVSQAKDSFLATMSHEIRTPLAGMLGMLEVLSMS---PLDHEQEP 403

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++    S+  LL +VNDILD + +  G + L+  +  +  LL EV  + +      N++
Sbjct: 404 ILKAAWDSARNLLRIVNDILDWSKIQDGKLILSPQSTSIPMLLQEVVNTYSHVASAKNLK 463

Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSV 723
           +   +D +L  + + D  RL Q+ +  +SNA+ F+ +G       +L+         F V
Sbjct: 464 LWQHADSQLSAAHIVDPLRLSQVLNNFVSNALKFTEQGEIELCAELLEQLESGERIRFFV 523

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  IP+ +   +F RF         Q  G GLGLSI         G + + S     
Sbjct: 524 KDTGVGIPKIVQPKLFERFQQESADTARQYGGTGLGLSICLHLAEFLDGKIELVSEPGLG 583

Query: 782 TTINCR--IP 789
              +    +P
Sbjct: 584 AIFSITVILP 593


>gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 929

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 153/325 (47%), Gaps = 26/325 (8%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I    +     ++   + +  + +  +E +     L ++++ + E         +T   
Sbjct: 427 EIVRLLNESRAMTEELQVQSEELQTQSEELQMQTEELTMINEQLEE---------RTKEA 477

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +  +A++ L E  E L      K+ F+ ++S+ELR+PL +I+  +++L  +   +
Sbjct: 478 ESKSRELEKAKKELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENSQHN 537

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +++++ + I +S   LL L+NDILDL+ V+AG + + ++ + ++++  +++ + A  
Sbjct: 538 LTDEEAEFAKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNMSEVPVQIEHTFAPV 597

Query: 662 MHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------ 714
             + N+   +  +D  +  F  D +R  QI   +LSNA  F+ +GS V L   +      
Sbjct: 598 AMKKNLAFHISKADHVVDVFYTDEKRFQQILKNLLSNAFKFTEQGS-VTLDINQLTPQQL 656

Query: 715 -------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
                         +V + G  IP+D  + +F  F         +  G GLGLSI + F 
Sbjct: 657 TNNMQDISKDWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFA 716

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L GG +++ S++   ++    IPS
Sbjct: 717 KLLGGWITLQSTEGQGSSFTLTIPS 741


>gi|294054688|ref|YP_003548346.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614021|gb|ADE54176.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1071

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/679 (17%), Positives = 253/679 (37%), Gaps = 62/679 (9%)

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW-HRDQAGDI 215
           G++ G+    R      +  E A        L    +  + + +  D   W  + Q G++
Sbjct: 264 GQLQGAVLVFR-----DLQREFA----MRDALVVERTRLQNVLEGTDAGTWDWKVQTGEL 314

Query: 216 LWANISYKKNTETEGIVFQKAIGES--RKLFKEEIKKRMISSSALE-----------KNF 262
              N  +           Q    E+  + L  +++K+  ++  A             +  
Sbjct: 315 N-VNERWASMFGYTAKELQPLSVETWIKHLHPDDLKQAQLALDAHFERKLLDYNVEFRML 373

Query: 263 CETVSTL-EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA--- 318
            +    +  +   K  +          +G  IDV++  +    L     +L  +  A   
Sbjct: 374 HKQGHWVWVNSRGKVLEWSDDGKPLHMSGTHIDVTQRKSTETALIEANSLLQGIYDAANL 433

Query: 319 --IAIFDQNRYLQFHNRSFVELWEIDLAFLAT--NPSNDELLEFLRS-ANKLPEQLNWKT 373
             I   D +  +   N     +     + +    +P    L E +RS A++L    N   
Sbjct: 434 VSIISTDCDGIITGFNAGAERMLGYRSSEMIGVHSPLKIHLEEEIRSVADELQLADNIPL 493

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQ----TLHVIVTSNPRG---GTIWMFENLTVQVDLE 426
           +     SV         T+   +G     TL V +  N  G   G + +  ++T  ++  
Sbjct: 494 FNVFKASVDMEKNERNWTYVCKDGSHRQVTLAVTMIRNDAGEITGYLGVAMDITAHLEAT 553

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K +    +  + ++ +   V     +   + SN  F +           G    +    
Sbjct: 554 RKLSESQYILSKVLNSIPVRVFWKDTNSVYQGSNRLFANDANLSSPERLIGLTDYDFGWD 613

Query: 487 CSRYYNESDGWDLFAAIIT--SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TM 539
                   D   +  +     ++++ ++   G L     + L+ S +PL +        +
Sbjct: 614 EQAELYREDDQKVMKSGRAKLNYEEPQRRSDGEL-----TWLKTSKVPLKDKHGKVIGVL 668

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
             + ++T   +AE  L +  +    A   K+ F+  +S+E+R+PL  I+GF+ +L+ S  
Sbjct: 669 GCYEDITLRKQAEADLIQAKDEAEAASRAKDEFLAVMSHEMRTPLNPILGFSAMLRESL- 727

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              N  ++ Y++ I +++   L L++DILD   ++   +  +     L DL        +
Sbjct: 728 --PNEPEAGYLDTIVSAANRQLRLIDDILDYMRINNSSITASPEPFRLADLCETAVHDAS 785

Query: 660 TKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG 717
           +      +       D +  + V D   L +I   +L NA  ++++GS  + L+ A  + 
Sbjct: 786 SLTDNLALDFHNELPDSQDFTVVTDLIMLRRILDNLLGNACKYTNEGSVDLYLRLAEYDS 845

Query: 718 DF---IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
                   V++ G  I E+M +++F  F         +  G+GLGL+I +  +++ GG +
Sbjct: 846 RISTFEIEVRDTGIGITEEMQRNLFEAFSQADSSYSRKHEGLGLGLAICKRLLDILGGEI 905

Query: 773 SISSSDEGVTTINCRIPSK 791
           S+ S     ++    IP +
Sbjct: 906 SVESIRGKGSSFTLSIPLQ 924



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/422 (14%), Positives = 131/422 (31%), Gaps = 52/422 (12%)

Query: 149 NDCAIKIEGRVSGSCAFLRILSLDGI-YSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
            D      G +  +  F  + ++     S L     +  +        +V FD++   + 
Sbjct: 115 WDELQAAPGSIRATRTFPELNTISESYQSMLRALIERQTENRLQDEHLRVTFDAIGDAIL 174

Query: 208 HRDQAGDILWANISYKKNT--ETEGIVFQKAIG-------ESRKLFKEEIKKRMISSSAL 258
             D  G ++  N    + T       V++ A         E+R+L +  I + + + +A+
Sbjct: 175 ITDAEGVVIRMNPVAVELTGWPASNAVYRPAAAVFKTLQTENRQLAENPIDQVLKTGNAI 234

Query: 259 EKNFCETVSTLEHGNNK-SYKIVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILH 313
           E      +        + +     + +++G+   A+    D+ +E  + D L      L 
Sbjct: 235 EAKTPSILIARNGTERQITTSAFALRDNYGQLQGAVLVFRDLQREFAMRDALVVERTRLQ 294

Query: 314 NLTVAI--AIFD---QNRYLQFHNRSFVELWEIDLAFLAT----------NPSNDEL--- 355
           N+        +D   Q   L   N  +  ++      L            +P + +    
Sbjct: 295 NVLEGTDAGTWDWKVQTGELN-VNERWASMFGYTAKELQPLSVETWIKHLHPDDLKQAQL 353

Query: 356 -LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            L+       L   + ++   +    V+ +S      W   +G+ LH+  T         
Sbjct: 354 ALDAHFERKLLDYNVEFRMLHKQGHWVWVNSRGKVLEWSD-DGKPLHMSGT--------- 403

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
              ++T +   ET       +     D  +   +     DG I   N     +     + 
Sbjct: 404 -HIDVTQRKSTETALIEANSLLQGIYDAANLVSIISTDCDGIITGFNAGAERMLGYRSSE 462

Query: 474 LSPGT-----HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +         H+     + +     +D   LF     S D E+     T      S  + 
Sbjct: 463 MIGVHSPLKIHLEEEIRSVADELQLADNIPLFNVFKASVDMEKNERNWTYVCKDGSHRQV 522

Query: 529 SI 530
           ++
Sbjct: 523 TL 524



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 119/376 (31%), Gaps = 36/376 (9%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           +++  +  ++   ++ +   + ++     Q  H       +  AI I D    +   N  
Sbjct: 129 RTFPELNTISESYQSMLRALIERQTENRLQDEHLRVTFDAIGDAILITDAEGVVIRMNPV 188

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
            VEL     +     P+            +L E    +  K    +  ++          
Sbjct: 189 AVELTGWPASNAVYRPAAAVFKTLQTENRQLAENPIDQVLKTG--NAIEAKTP--SILIA 244

Query: 395 PNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            NG    +  ++           G + +F +L  +  +              ++    G 
Sbjct: 245 RNGTERQITTSAFALRDNYGQLQGAVLVFRDLQREFAMRDALVVERTRLQNVLEGTDAGT 304

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
             +         N  + S++      L P +       T  ++ +  D      A+   F
Sbjct: 305 WDWKVQTGELNVNERWASMFGYTAKELQPLS-----VETWIKHLHPDDLKQAQLALDAHF 359

Query: 508 DDERKSLQGTLELL-------------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             ERK L   +E                  VLE+S    P      T ++VT     E A
Sbjct: 360 --ERKLLDYNVEFRMLHKQGHWVWVNSRGKVLEWSDDGKP-LHMSGTHIDVTQRKSTETA 416

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL---KTSKLGSLNSKQSQYVE 611
           L E N  L+   +  N  V  +S +    +T      + +   ++S++  ++S    ++E
Sbjct: 417 LIEANSLLQGIYDAAN-LVSIISTDCDGIITGFNAGAERMLGYRSSEMIGVHSPLKIHLE 475

Query: 612 YISASSTILLNLVNDI 627
               S    L L ++I
Sbjct: 476 EEIRSVADELQLADNI 491


>gi|330445983|ref|ZP_08309635.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490174|dbj|GAA04132.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 700

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/550 (20%), Positives = 210/550 (38%), Gaps = 68/550 (12%)

Query: 293 IDVSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNR---SFVELWEIDLAFLAT 348
           ID+ +      QL    E IL  ++   A+   N   Q  N       +    D A + T
Sbjct: 14  IDLLRSQERESQLQDENEAILEGIS---AMAGANDKRQVFNSLLEVLRKFIGFDQALVLT 70

Query: 349 NPSNDELLEFLRSANKLPEQLNWK---TWKENIFSVYKSSETHKDTWHLPN--------- 396
              +  +L+ L S +      +W+   T+K  I     +  + KD     +         
Sbjct: 71  REDDQSMLDVLVSTDNRFGTSSWQIETTFKRAINGECIALYSPKDVIEFRDQPKVILEEY 130

Query: 397 -GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
               L  +  S+     I M  + +       +   ++      +       A+   D R
Sbjct: 131 QSALLTGVKVSSSDAVMILMSHDKS---QFTPRCRRVLNRFRPLL-----ARAIIDIDYR 182

Query: 456 -------------IKLSNPAFRSLWKTEENRL-----------SPGTHIRNIAATCSRYY 491
                        +  S   F+   KT  +                 HI N   TC  + 
Sbjct: 183 ERLQSLVAARTQQLTFSQQRFKDFAKTAGDWFWEIDINFNFTYISEPHIANYPITCDNFI 242

Query: 492 NESDGWDLFAAIITSFDDERKSLQ----GTLELLSDSVLEYSIIPLPN-----AQTMLTF 542
                +  F   +     E+   +       +  S+    +S  P  +          T 
Sbjct: 243 EFFQDYPQFQKKLELKLAEQVVFEDLEWNIKKTNSEQWFNFSGTPYFDKYGKLQGYRGTA 302

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            N+T   +    L E  +    A++ K+ F+  +S+E+R+PL  ++G   L+++  L  L
Sbjct: 303 KNITSRKKRLFDLQEARKQAESANKAKSQFIAMMSHEIRTPLNAVLG---LMESLSLSGL 359

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +SKQ  ++  +  S+ +LL ++NDILDL+ +++G  +L  S I + + +  V   ++ + 
Sbjct: 360 DSKQKLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINIVESIKLVADQLSPQA 419

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + N++++   D  +      D+ R+ Q+   ++ NA+ F+S GS V + A +       
Sbjct: 420 TKKNVQLQCEIDDSIPKQIYGDKNRIAQVLFNLIGNAVKFTSVGS-VRIVARKIEETIEI 478

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  I +D  +++FN F         +  G GLGL+I +  I    G +S+ S   
Sbjct: 479 AVIDTGIGIAKDAQENIFNPFHQADGSITRRYGGTGLGLAISQYLIEKMKGKISLESELG 538

Query: 780 GVTTINCRIP 789
             +     IP
Sbjct: 539 TGSCFKISIP 548


>gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1140

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 115/262 (43%), Gaps = 24/262 (9%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L++ D++K+ F+ + S+ELR+PL  IIG  + L     GSL  K    +  I 
Sbjct: 429 LETKNAELQQLDKLKDEFLANTSHELRTPLNGIIGIAESLIDGATGSLPDKTVSNLALIV 488

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L NLVNDILD + +    M+L    I + ++   V       + + ++++     
Sbjct: 489 SSGRRLSNLVNDILDFSKLSHNNMELEIKPIGMREISEVVLTLSQPLIGKKSLQLINAIS 548

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKG------------------STVILKAARD- 715
            ++    AD  R+ QI   I+ NA+ F+ KG                    + +  + D 
Sbjct: 549 PEVPLVDADENRMQQILHNIIGNAIKFTEKGIVEVSAEVVDSSSKLLQEGYIKIVESNDS 608

Query: 716 ---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
              N     +V + G  IPED  + +F  F         +  G GLGL++ +  + LH G
Sbjct: 609 STQNQRLAITVADTGIGIPEDKLERIFEAFEQGDGSTAREYGGTGLGLAVTKQLVELHQG 668

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            + +SS     +     +P  +
Sbjct: 669 EIWVSSKVGVGSKFIFTLPISQ 690


>gi|288561543|ref|YP_003428949.1| sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548175|gb|ADC52057.1| sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 470

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 122/237 (51%), Gaps = 4/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    + L++  + ++ F   +S+EL++P++ ++G++++LK  KL     ++ QY+  + 
Sbjct: 224 INNLTQELKRHHDTRSEFFASISHELKTPVSYLMGYSEVLKE-KLYQTEEEKEQYLSILE 282

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +T L  L++D+ DL+ ++ G   +N   I L +L + +    + K  E ++   V  D
Sbjct: 283 HEATRLNYLISDLFDLSKMEEGKFDINKEWIDLTELADNLDMKYSLKAKEKDLLFTVKVD 342

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L  F  D +R+ Q+F+ +L NAM  ++ G  V  +  + +      +K+ GS IP D 
Sbjct: 343 ENLSLFYGDGKRIEQVFTNLLDNAMRHTTNGE-VTCEFRQGDNQINIIIKDTGSGIPADE 401

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F+RF        R   G GLGL+IV+  + LHGG + I+S +   T      P
Sbjct: 402 LPFIFDRFYRVEKSRSREFGGTGLGLAIVKMLVKLHGGTIDITSKENEGTQFTLSFP 458


>gi|134300812|ref|YP_001114308.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134053512|gb|ABO51483.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 487

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 108/240 (45%), Gaps = 3/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L   ++I+  FV +V++E+++PL  + GFT+ +    +     +++ Y+  I 
Sbjct: 245 LQEKITQLEAQEQIRREFVSNVAHEIKTPLAIMQGFTETMLDGLVKDEKERET-YLGNIL 303

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  LVN+ILDL  ++ G    +     L  L+  V   +   + +  + +K+  +
Sbjct: 304 DEINRLKRLVNEILDLKRMEEGHFDFDKEPCDLKVLIYRVLGKLNQLVEQKGVNLKLNLE 363

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +L     +  R+ ++   ++ NA+  + +G  + +            +++ G  I  + 
Sbjct: 364 KRLLPVTCNSDRMERVLINLIDNAVRHTPEGGKIFIYVTSKANQVHIRIRDTGVGISPED 423

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              ++ RF        R   G GLGL+IV+  +  HGG + + S     T+ N  +P  +
Sbjct: 424 LPMIWERFYKADKSRSRTQGGTGLGLAIVKKIVEAHGGQIYVESKLNEGTSFNIVLPVNQ 483


>gi|323464229|gb|ADX76382.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           pseudintermedius ED99]
          Length = 566

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 162/384 (42%), Gaps = 33/384 (8%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           ++  + V      + N+  K+Q      T++++   + +   +G+I ++N  F  ++   
Sbjct: 206 LYVTINVLARRLEQLNSEQKIQRNRLVTTLENIPSAILMIDKNGKIVIANKTFYEVFNAS 265

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLE 527
            N               ++ Y       +   ++  F  E+   K ++ ++  +     +
Sbjct: 266 TN-------------VENQDYARYLHPTIKQLVVEGFRTEKAMYKQVEISINHIHQKFFD 312

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S +P+ +         V         +      L+K + +++ FV +VS+EL++P+T++
Sbjct: 313 TSCVPILSRTKKSLQGMVI--------VLHDITQLKKLENLRSEFVANVSHELKTPITSM 364

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GFT+ L         +    ++  I   S  + +LV D+LDL+ ++     L    I L
Sbjct: 365 KGFTETLIDGAKND-EASLDLFLNIILKESNRIQSLVEDLLDLSKIEQNT-TLEKHLIDL 422

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +D+       I    +E +I++    +  + +  AD  ++ Q+   +++NA+++S +  T
Sbjct: 423 SDVAKSSFSVIQPLANEKSIQLIDQIEPNVTAM-ADENKISQVIVNLMTNAVNYSPENRT 481

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           V L   R+N   +  V + G  I E     +F RF            G GLGLSI +  I
Sbjct: 482 VTLAVYRENQHPVIEVIDQGIGIGEKEKYRIFERFYRVDKARSRDSGGTGLGLSITKHII 541

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             + G++ ++S     +     +P
Sbjct: 542 EAYQGNIEVASELGKGSRFKVVLP 565



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       L N+  AI + D+N  +   N++F E++       +TN  N +   +L
Sbjct: 223 EQKIQRNRLVTTLENIPSAILMIDKNGKIVIANKTFYEVFNA-----STNVENQDYARYL 277

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
               K      ++T K  ++   + S  H             +  T     G + +  ++
Sbjct: 278 HPTIKQLVVEGFRTEKA-MYKQVEISINHIHQKFFDTSCVPILSRTKKSLQGMVIVLHDI 336

Query: 420 TVQVDLE 426
           T    LE
Sbjct: 337 TQLKKLE 343


>gi|224370415|ref|YP_002604579.1| sensory box histidine kinase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223693132|gb|ACN16415.1| sensory box histidine kinase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 1003

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 159/411 (38%), Gaps = 41/411 (9%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + +  +  ++            T    + G+A   P+G+    N     +W      L  
Sbjct: 575 QEILHREKVDKALYKSEARFRSTFQQAAVGIAHVSPEGKFIRINERLCQIWGYGLRELIQ 634

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
               + I  +     +      +    I+ +  E++ +      +       ++  L N+
Sbjct: 635 KN-FQEITHSEDLNADLDLVQQVIDGKISRYSMEKRYISKNGYPV---WCNLTVSLLRNS 690

Query: 537 QTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                +      +++   +AE  L        KA+  K++F+  + +ELR+PL  +IGF+
Sbjct: 691 DGTPRYFISVVEDISQRKKAEERLLSAKIEAEKANIAKSNFLASMGHELRTPLNAVIGFS 750

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L     G LN +Q++YV  I  S   LL L+NDILDL+ V+AG M+       L+ ++
Sbjct: 751 EVLLDQFFGPLNPQQAEYVNDILHSGRHLLTLINDILDLSKVEAGWMRFLPVPTPLDSVM 810

Query: 652 NEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            E  ++I   + E  IR+      +       +D  +L QIF+ +LSNA  F+ KG T+ 
Sbjct: 811 GESLKTIGPMIKEKQIRLIRDLPKEFSKIHLHSDPVKLKQIFNHLLSNAAKFTPKGGTIT 870

Query: 710 LKAARDNG---------------------------DFIFSVKNNGSSIPEDMCKSVFNRF 742
           +     +                                 +++ G+ +       +F  F
Sbjct: 871 ITGKIVSDVCLPSNMALKDTPLPDSLRTCTQPGVPGVEICIRDTGTGLTSGHSDKIFESF 930

Query: 743 VSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
                    +  G GLGLS+   F+ +H G + + S      +     IP 
Sbjct: 931 FQVEGGISDKSPGTGLGLSLARRFVEMHKGRIWVHSDGLGKGSCFYFTIPL 981


>gi|319654313|ref|ZP_08008401.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
 gi|317394013|gb|EFV74763.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
          Length = 931

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 158/376 (42%), Gaps = 45/376 (11%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           +  +K+  + I+ L  G+A+    GR+++      S  +T             + A    
Sbjct: 410 DAQIKLLEKVIETL--GIAITNISGRMEIERLLAESQAQT-----------EELQAQAEE 456

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             ++S+     +  + S  +E + +   LE  S                    +   +  
Sbjct: 457 LQSQSEELQAQSEEMQSQSEELRMINEQLEERS----------------RDAEMKSEELQ 500

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A+  L EK + L  + + K+ F+ ++S+ELR+PL +I+  +++L       L  +Q ++
Sbjct: 501 AAKEELEEKAKQLSLSSKYKSEFLANMSHELRTPLNSILLLSEMLAEDPDQMLTEEQKEF 560

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S   LL L+NDILDL+ V+ G +++++  + + ++   + Q         N+  
Sbjct: 561 SKVIHTSGQDLLTLINDILDLSKVEVGKLEISFEEVNMGEMSQRMNQHFTQVAKHKNLEF 620

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILK------------AARD 715
            V  S+     F  D QRL QI   +LSNA  F+ +GS  V  +            +A  
Sbjct: 621 TVSSSEEVPPVFHTDEQRLQQIVKNLLSNAFKFTEEGSVAVTFEKAAQSDFFGLPLSAYT 680

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
           +     +V + G  IP +  + +F  F         +  G GLGLSI + F  L GG   
Sbjct: 681 DDWLKITVLDTGIGIPAEKQQLIFEAFQQADGATMRKYGGTGLGLSISKEFAQLLGGICK 740

Query: 774 ISSSDEGVTTINCRIP 789
           + S +   +     IP
Sbjct: 741 VESEEGKGSRFTLVIP 756


>gi|254444274|ref|ZP_05057750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258582|gb|EDY82890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 748

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 122/263 (46%), Gaps = 11/263 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +T        +  ++ + LT   +A   A+  K+ F+  +S+E+R+P+  ++G   LL+
Sbjct: 59  ERTQSLEKARDELEKSNQELTVAMKAAESANVAKSEFLATMSHEIRTPMNGLVGVLTLLE 118

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L  ++ + +      +  LL L+NDILD + ++AG M L        +L   + 
Sbjct: 119 E----DLPFEKRKLLGTAQECADDLLVLINDILDFSKIEAGKMNLESVEFNALNLAESIC 174

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----IL 710
           +  ++  H+  + I   SD       + D  RL Q+ S + SNA+ F+++G  V    I+
Sbjct: 175 ELHSSSAHKKGLEITSDSDPSSAFCSIGDPLRLRQVISNLTSNAIKFTNQGEIVVTPSIV 234

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               +     F + ++G  I ++  + +FN F        R   G GLGL+I +  I + 
Sbjct: 235 SKDCEQNYLRFEITDSGIGITKETQEKLFNAFTQANSSTTREFGGTGLGLAISKKLIEIM 294

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG + +SS +   +T    IP +
Sbjct: 295 GGDIGVSSKEGTGSTFWFEIPHR 317


>gi|149174997|ref|ZP_01853621.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
 gi|148846334|gb|EDL60673.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
          Length = 883

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 11/273 (4%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            V + ++  L +    L         +AER L + N     A   K+ F+ ++S+E+R+P
Sbjct: 442 QVRDLALNELKDRTENLELTRRELEEKAER-LKQANTDAEAASRAKSEFLANMSHEIRTP 500

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T ++G+TDLL     G   S Q   ++ I  +   LL L+NDILDL+ +++G + +   
Sbjct: 501 MTAVLGYTDLLIEESWGRPGSIQ--LLDVIKRNGHYLLELINDILDLSKIESGNLTIETI 558

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
              L + + E++  +  +     +  K+  +G L     +D  RL QI   ++ NA+ FS
Sbjct: 559 QFSLLEKMKEIQSLMKVRAELRGLHFKLSFEGTLPVEIQSDPTRLKQILINLIGNAIKFS 618

Query: 703 SKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
             G  V ++ +      DN    F + + G  +  +    ++  FV       R   G G
Sbjct: 619 PDGGKVSVETSFLNSSADNPLLEFKISDTGIGMTAEQIAMLYQPFVQADSSTTRKFGGTG 678

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +    + GG ++  S     T     I
Sbjct: 679 LGLAISKRLAEMLGGDLTCESVPGEGTVFTLTI 711


>gi|307318980|ref|ZP_07598411.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
 gi|306895394|gb|EFN26149.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
          Length = 1133

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/588 (19%), Positives = 229/588 (38%), Gaps = 34/588 (5%)

Query: 224  KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
              T  E   F++   +  + F  +   +   +    +      +  +   ++  +     
Sbjct: 555  ALTRGEQAAFREIARQLGEHFAPDQLPQEGKAEGRHEADTSPSTPADTEESRQTEKAEAP 614

Query: 284  NSFGEAGIAIDVSKEI-----TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
              + +A  A +          T  +    + EIL  L VA+ +   +  L   N  F+ L
Sbjct: 615  GGWHDATPAGETPAAAMEPGLTARNGAAMSSEILDRLPVALLVHHGDA-LLHANAEFLRL 673

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
               +             LE       L                   +   KD   +P G 
Sbjct: 674  TGYEN------------LEAFEQEGGLEALFALGNEAGAAKPNGTMTLVRKDGRLIPVGA 721

Query: 399  TLH---------VIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVA 448
             LH         +++   P G +    +    +   E  +    +      ++  ++GV 
Sbjct: 722  HLHSIRWEGKSALMLALTPAGASEAEKQAREDEGAAEASRLRMEIDELRSILETATDGVV 781

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            V G DG I+  N +  +L+  +E+ +  G     + A  S+         L    + S  
Sbjct: 782  VLGRDGDIRTMNRSASALFDYDESDMR-GKPFAALFAHESQKAVIDYLQGLSGHGVASVL 840

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE 567
            ++ + + G         L  +I  L ++        ++T   R E  L     A   A+ 
Sbjct: 841  NDGREVIGREAAGGFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAAETANA 900

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVND 626
             K  F+  VS+E+R+PL  IIGF+D++ +   G + + +  +Y   I  S   +L++VND
Sbjct: 901  HKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVND 960

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD++ ++AG M L++  + LN+ ++E    +  + +   + I+    G +   VAD + 
Sbjct: 961  LLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDRS 1020

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + QI   IL+NA+ F+  G  +++  + + NG  I  +++ G  +  +        F   
Sbjct: 1021 IKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQV 1080

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               G++R  G GLGL + ++    +    +I+S+    T +    PS+
Sbjct: 1081 TTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFPSQ 1128


>gi|56475528|ref|YP_157117.1| fusion Na-dependent permease/histidine kinase domain-containing
           protein [Aromatoleum aromaticum EbN1]
 gi|56311571|emb|CAI06216.1| Fusion protein of probable Na-dependent permease domain and
           histidine kinase domain of putative two-component sensor
           [Aromatoleum aromaticum EbN1]
          Length = 918

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L   NE L++ D +K+ F+  VS+ELR+PLT+I  F+++L      +L  +   ++
Sbjct: 666 ATAELRAANERLKELDRLKDDFMSSVSHELRTPLTSIRAFSEMLLDDPDIALPDRMR-FL 724

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I + +  L  LVN +LDLA +++G  + + S I +  L+ +   + A    +    ++
Sbjct: 725 GIIVSETERLTRLVNQVLDLAKIESGHAEWHNSDIDMRALVEQAVDTTAQLFRDRGATVE 784

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNGSS 729
           ++   +     AD  RL+Q+   +LSNA  F  +G   + +    + G     V +NG  
Sbjct: 785 LVLPDEAPHLKADHDRLVQVMLNLLSNAAKFVPQGAGRIRVALKSEAGQVRVEVSDNGPG 844

Query: 730 IPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           IP ++   +F +F        R +G GLGL I    +   GG + + S     T     +
Sbjct: 845 IPPELHGVIFEKFRQGGDERSRPQGTGLGLPISRQIVEHFGGRLWVESPPGHGTVFTFVL 904

Query: 789 PS 790
           P 
Sbjct: 905 PL 906


>gi|291326604|ref|ZP_06125114.2| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
 gi|291313686|gb|EFE54139.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
          Length = 1032

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 164/372 (44%), Gaps = 25/372 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +D +             I     G+ V   +  +++ +N   R   K           I 
Sbjct: 334 IDSQQAILENESFNQTLIATTPIGLCVIDKETQQLRFANELARYWLK-----------IT 382

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           NI+      ++ ++  +L   +++     + +L+    +L   V+  +         +  
Sbjct: 383 NISTP----HDSNEYNELLIKVLSDTGQVKTNLKSGEHVL--YVVSTATYYQQRPVILCA 436

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T     E+ L +      +A+  K++F+  +S+E+R+PL  +IG  +LL  +   S
Sbjct: 437 FTDITIQAETEKQLDDAKRLAEEANRAKSTFLATMSHEIRTPLYGLIGTLELLANT---S 493

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q+ +++ IS +S +L+ L+ DILD++ ++A  ++++     L +L+ +  Q     
Sbjct: 494 LSSQQAHFIDRISTTSQLLMQLIGDILDISKIEANQIQIHNQPFDLLELVQQTVQLYQGI 553

Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDF 719
             +  + +  I D  +  + + D  RL QI   +LSNA+ F+ +G TV ++  R N  + 
Sbjct: 554 AQQKGLLLFAIIDPNVQANRIGDSARLQQILGNLLSNAIKFTHRG-TVTIELKRSNKNNI 612

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           +  V + G  I  +    +F  F           G GLGL I    I L  G +S+ S  
Sbjct: 613 LLRVSDTGVGISPEQQIKLFEPFYQAHSEIHAYGGTGLGLFICSKLIKLMDGQISLQSET 672

Query: 779 EGVTTINCRIPS 790
              ++    +P 
Sbjct: 673 GVGSSFLVTLPL 684


>gi|228961728|ref|ZP_04123332.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797963|gb|EEM44972.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 613

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|319892739|ref|YP_004149614.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162435|gb|ADV05978.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 566

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 162/384 (42%), Gaps = 33/384 (8%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           ++  + V      + N+  K+Q      T++++   + +   +G+I ++N  F  ++   
Sbjct: 206 LYVTINVLARRLEQLNSEQKIQRNRLVTTLENIPSAILMIDKNGKIVIANKTFYEVFNAS 265

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLE 527
            N               ++ Y       +   ++  F  E+   K ++ ++  +     +
Sbjct: 266 TN-------------VENQDYARYLHPTIKQLVVEGFRTEKAMYKQVEISINHIHQKFFD 312

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S +P+ +         V         +      L+K + +++ FV +VS+EL++P+T++
Sbjct: 313 TSCVPILSRTKKSLQGMVI--------VLHDITQLKKLENLRSEFVANVSHELKTPITSM 364

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            GFT+ L         +    ++  I   S  + +LV D+LDL+ ++     L    I L
Sbjct: 365 KGFTETLIDGAKND-EASLDLFLNIILKESNRIQSLVEDLLDLSKIEQNT-TLEKHLIDL 422

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +D+       I    +E +I++    +  + +  AD  ++ Q+   +++NA+++S +  T
Sbjct: 423 SDVAKSSFSVIQPLANEKSIQLIDQIEPNVTAM-ADENKISQVIVNLMTNAVNYSPENRT 481

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           V L   R+N   +  V + G  I E     +F RF            G GLGLSI +  I
Sbjct: 482 VTLAVYRENQHPVIEVIDQGIGIGEKEKYRIFERFYRVDKARSRDSGGTGLGLSITKHII 541

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             + G++ ++S     +     +P
Sbjct: 542 EAYQGNIEVASELGKGSRFKVVLP 565



 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
               Q       L N+  AI + D+N  +   N++F E++       +TN  N +   +L
Sbjct: 223 EQKIQRNRLVTTLENIPSAILMIDKNGKIVIANKTFYEVFNA-----STNVENQDYARYL 277

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
               K      ++T K  ++   + S  H             +  T     G + +  ++
Sbjct: 278 HPTIKQLVVEGFRTEKA-MYKQVEISINHIHQKFFDTSCVPILSRTKKSLQGMVIVLHDI 336

Query: 420 TVQVDLE 426
           T    LE
Sbjct: 337 TQLKKLE 343


>gi|46202457|ref|ZP_00053186.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 669

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/688 (15%), Positives = 245/688 (35%), Gaps = 47/688 (6%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
                 +S     LR++        E       + +  ++G+   L +   + + ++  +
Sbjct: 2   EAELHAMSMELAALRRQ------TPEAMA----EAQRHMAGTLHNLHV-HQEELRTQNEQ 50

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                  +      ++ LF+      +  D    ++ ANI+             +  G+ 
Sbjct: 51  LRQAQDNIEKVSHRYQDLFEYSPAGYFIIDDKLTVIDANIA---GMGMLARTKSRITGKP 107

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVS---TLEHGNNKSYKI----VRVLNSFGE----A 289
             LF E+  +  + +           S    L       + +    VR+   +G+     
Sbjct: 108 FLLFVEKDSRHDLDAHFATVRSVGRASSELWLSPDQRPPFPVILESVRLGEGWGDGWRCL 167

Query: 290 GIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--- 342
             A+D++     EI + +  T    I     +AI I D     +  NRS+V+LW      
Sbjct: 168 STALDITSRKQAEIALQESETRFRAIFEQSPLAIQIVDAASVPRMSNRSWVKLWGQTVTA 227

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
                 +P    +L+ + +   L E L  ++ +     V   +   ++ W   +G    +
Sbjct: 228 PTAEGGHP----VLDRIGAERLLSEGLAGRSLEIPAIHVTVDTGRGEERW--VHGYAYPI 281

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              ++     + + E++T Q   E +      +    ++   + + +F  DG I  +N  
Sbjct: 282 RGRNDSVPEVVLVHEDITEQKRSERELQISQSLINALLNASIDAIMLFKIDGAILAANTV 341

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
               + T    L        +    +    ++    L + I     D +  L      L 
Sbjct: 342 MAERFCTTVECLLGDCVWTLLPPDLAESRRQACLGVLESGIPAHVLDHQGEL-----FLD 396

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           + +   +       +  +   +++D  RAE  +T     + +++     F    S++LR 
Sbjct: 397 NFIFPVTGPDGRIDKLAVFSRDISDQKRAEAKITSYVAEIERSNSELEQFAYVASHDLRE 456

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  +  +  LL+      L+     ++ Y    +  +  LV  +L+ + +      +  
Sbjct: 457 PLRMVSSYLSLLERRYGALLDQDGHDFIGYARDGAKRMDQLVLGLLEFSRITRHGDPITA 516

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF- 701
             ++    +     ++   + E    I +         + D  +++++F  ++ NA+ + 
Sbjct: 517 MPVLPA--IQLALTNLGMGVSECGAAIHIDESLLSCGIMGDPVQIMRLFQNLIGNALKYR 574

Query: 702 -SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            S     + +     +G + FS+ +NG  I  +  + +F  F     R Q  G G+GL+I
Sbjct: 575 KSEVAPAISIGGRLRDGGWEFSISDNGIGIATEYFERIFGIFQRLHTRDQYEGTGIGLAI 634

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  +  HGG + + S  +  TT    +
Sbjct: 635 CKKIVERHGGSIWLESQPDMGTTFFFTL 662



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 88/306 (28%), Gaps = 20/306 (6%)

Query: 51  LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDT 110
           L  +  +       I     +Y  L   +     + D  D+   I   +     + +T +
Sbjct: 44  LRTQNEQLRQAQDNIEKVSHRYQDLFEYSPAGYFIID--DKLTVIDANIAGMGMLARTKS 101

Query: 111 DLLS--FENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC---AIKIEGRVSGSCAF 165
            +    F  +++      L      +R  G++   +  + +      + +E    G    
Sbjct: 102 RITGKPFLLFVEKDSRHDLDAHFATVRSVGRASSELWLSPDQRPPFPVILESVRLGEGWG 161

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
                L     ++         L    + F+ +F+     +   D A     +N S+ K 
Sbjct: 162 DGWRCLS-TALDITSRKQAEIALQESETRFRAIFEQSPLAIQIVDAASVPRMSNRSWVKL 220

Query: 226 TETEGIVFQKAIGES--RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
                       G     ++  E +    ++  +LE            G  +        
Sbjct: 221 WGQTVTAPTAEGGHPVLDRIGAERLLSEGLAGRSLEIPAIHVTVDTGRGEERWVHGYAYP 280

Query: 284 NSF------GEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNR 333
                        +  D++++     +L  +  +++ L      AI +F  +  +   N 
Sbjct: 281 IRGRNDSVPEVVLVHEDITEQKRSERELQISQSLINALLNASIDAIMLFKIDGAILAANT 340

Query: 334 SFVELW 339
              E +
Sbjct: 341 VMAERF 346


>gi|320324827|gb|EFW80899.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329193|gb|EFW85190.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 778

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 8/370 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIR 481
           + E       +     I+ + + G+     +G +   N     +    E   +     + 
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVF 318

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   C ++ + +          T  +  R+   G+    S  +                
Sbjct: 319 YLPEECPQHPDMALREATVNGRYTE-ESWRRRKDGSRFWASVVITAQYDGNDELRGFSKI 377

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S
Sbjct: 378 TRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS 437

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++  
Sbjct: 438 ----QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPM 493

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + NI +K +         VADRQRL+Q+   +LSNA+ ++     V ++  + +    
Sbjct: 494 AADANIELKALPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVT 553

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++   
Sbjct: 554 VSVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAE 613

Query: 781 VTTINCRIPS 790
                  +P 
Sbjct: 614 GCRFILELPL 623


>gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
 gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
          Length = 897

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 146/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++ +   R         +   ++   D  +  +      LS+  +E          
Sbjct: 171 RPISHMVSVVDRIRRGHLDIRIEGQLLGELDTLKNGINAMAISLSEYHIEMQQSIDQATS 230

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 231 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 288

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+S Q  Y+  I  S+  LL ++NDILD + ++AG + L        + L+EV +
Sbjct: 289 R----LSSSQHDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFTESLDEVMR 344

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
            +A   HE  + + +  D ++ +  + D  R+ Q+ + ++ NA+ F+ +G+    V LKA
Sbjct: 345 LLAPSAHEKGLELTLKVDHRIPAGLIGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKA 404

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
           ++D   +  F+V++ G  I E     +F  F         +  G GLGL I +  +   G
Sbjct: 405 SKDENIELQFTVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVTQMG 464

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 465 GEISLTSRLHQGSTFWFSL 483


>gi|90021885|ref|YP_527712.1| sensor/response regulator hybrid [Saccharophagus degradans 2-40]
 gi|89951485|gb|ABD81500.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 942

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    ++  +A  +K+ F+ + S+E+R+PL  I+GF++LL+ ++   LN++Q  Y+  I
Sbjct: 257 ELDIARKSALQASRVKSEFLANTSHEIRTPLNGILGFSELLRKTE---LNNQQVDYLTTI 313

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++NDILD + ++ G + L Y  + +  L+ +  +      +E NIR+  I 
Sbjct: 314 EESAKGLLTIINDILDFSRLEIGTLTLEYKPVKIRQLIEDTLKLQTPAANEKNIRMLTII 373

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNG 727
           D  +    + D  RL Q+ S ++SNA+ F+  G  ++L  ++D          F V ++G
Sbjct: 374 DHDVPENLLGDPLRLKQVLSNLVSNAIKFTDVG-YILLGVSKDQSSENQFTLKFRVTDSG 432

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +D  + +F+ F        R   G GLGL+I +  ++   G + + S+     T  
Sbjct: 433 IGLSQDQQERLFDPFTQLDSSESRLHGGTGLGLAIAKGLVDRMNGTIGVESTLGKGATFW 492

Query: 786 CR 787
             
Sbjct: 493 FT 494


>gi|172059032|ref|YP_001815492.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171991553|gb|ACB62475.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 616

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 159/385 (41%), Gaps = 27/385 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT ++ +         +     ++++++GV       R+ L N   + +  
Sbjct: 248 GQLARSFNELTDELLEANATTEAERRKLTSVLENMTDGVIATDRTLRVILMNDQAKDIVG 307

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +E+ +  GT+++++ A    +    DG      +  S +DE              ++  
Sbjct: 308 VDESGIV-GTNLKDLLALGDDFMIPEDGTMPPRLLDFSSEDEL------------FLVRA 354

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              P+      +T + +      E+          + ++ +  FV +VS+ELR+PLT + 
Sbjct: 355 FFSPVKKHSGPITGMIIVLHDVTEQE---------QVEQDRREFVANVSHELRTPLTTMR 405

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LV D+L L+ +D+   K+N       
Sbjct: 406 SYLEALAEGAYQD-EELAPRFLETTQNETERMIRLVTDLLQLSKMDSKEYKMNKVRFDYI 464

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             LN++         E  IR +     +      D+ +L+Q+   IL+NA+ +S +G T+
Sbjct: 465 QFLNDILDRHDMTKPER-IRFRRKIMKRKVYIRGDQDKLIQVADNILTNAIKYSPEGGTI 523

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            ++        + S+K+ G  IP+   + +F RF        R   G GLGLSI +  ++
Sbjct: 524 TVRTMLRAKRIVISIKDEGVGIPKANLQKIFERFYRVDKARARKIGGTGLGLSIAKDVVS 583

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG +   S     TTI   +P +
Sbjct: 584 AHGGDIWAESEWGRGTTIYFTLPYE 608



 Score = 46.1 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
               T   +      +L N+T  +   D+   +   N    ++  +D + +      D L
Sbjct: 263 EANATTEAERRKLTSVLENMTDGVIATDRTLRVILMNDQAKDIVGVDESGIVGTNLKDLL 322

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              L     +PE        +          + +D   L       V   S P  G I +
Sbjct: 323 A--LGDDFMIPE--------DGTMPPRLLDFSSEDELFLVRAFFSPVKKHSGPITGMIIV 372

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
             ++T Q  +E            +  T +      ++ L+EG
Sbjct: 373 LHDVTEQEQVEQDRREFVANVSHELRTPLTTMRSYLEALAEG 414


>gi|168187447|ref|ZP_02622082.1| two-component sensor histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169294655|gb|EDS76788.1| two-component sensor histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 779

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 175/391 (44%), Gaps = 19/391 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA---FRSLWKT 469
           I++  +L  + +  T      K     I+   + + +   + R    N A   F +L   
Sbjct: 363 IFLSMSLYEKHNTRTALIESEKRLRTLINSSPDLICLKDGNCRWLEINKATVNFLNLKNI 422

Query: 470 EENRLSPGTHIRNIAATCSRY--YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           +    +    I       +R   Y   D   L    I ++ DE  S  G     S  VL+
Sbjct: 423 DWKNKTTEQLINLTNTYKNRLEKYKNFDFLTLKQKSIINYQDEFFSNNG-----SKIVLD 477

Query: 528 YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              +P+ ++       +    ++T  ++AE      +EAL    +++  F  ++S+EL++
Sbjct: 478 IFKVPIFDSNNNPSGLVTIGHDLTPHLKAEENKKLLDEALS-YQQLRTKFFANISHELKT 536

Query: 583 PLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           PL  I+     L++ +   SL +  ++Y + I  +S  ++ ++N+ILD+  +D+G  +++
Sbjct: 537 PLNLILSAIQFLQSVNGDSSLRTNFNKYGDVIKENSYRMVRIINNILDITKIDSGYFEIH 596

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                + +++ ++    ++ ++  N+     +D +      D   + +I   +LSNA+ F
Sbjct: 597 PENYNIVEVVEDICLYSSSYINSKNLEFIFDTDTEEKIIACDPHLIERIILNLLSNAIKF 656

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLS 759
           ++ G  + +           S+K+ G  IP++  K +F RFV         + G G+GLS
Sbjct: 657 TNAGGKITVNMYDKGDFIDISIKDTGIGIPKNHQKIIFERFVQIDKSLSRNQEGSGVGLS 716

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +V+SF++LH G + ++S     +     +PS
Sbjct: 717 LVKSFVDLHNGFIKLNSKVGHGSEFIITLPS 747


>gi|161936294|ref|YP_131202.2| hybrid sensory histidine kinase BarA [Photobacterium profundum SS9]
          Length = 927

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 146/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++ +   R         +   ++   D  +  +      LS+  +E          
Sbjct: 201 RPISHMVSVVDRIRRGHLDIRIEGQLLGELDTLKNGINAMAISLSEYHIEMQQSIDQATS 260

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 261 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 318

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+S Q  Y+  I  S+  LL ++NDILD + ++AG + L        + L+EV +
Sbjct: 319 R----LSSSQHDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFTESLDEVMR 374

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
            +A   HE  + + +  D ++ +  + D  R+ Q+ + ++ NA+ F+ +G+    V LKA
Sbjct: 375 LLAPSAHEKGLELTLKVDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKA 434

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
           ++D   +  F+V++ G  I E     +F  F         +  G GLGL I +  +   G
Sbjct: 435 SKDESIELQFTVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVTQMG 494

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 495 GEISLTSRLHQGSTFWFSL 513


>gi|254487059|ref|ZP_05100264.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
 gi|214043928|gb|EEB84566.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
          Length = 1047

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 130/742 (17%), Positives = 254/742 (34%), Gaps = 83/742 (11%)

Query: 85  VWDGKDETPE--IIGQLHQRIDIPQTDTDLLS--FEN-W-LKFHHYIKLSKATEKLRKEG 138
           V+DG    P+  I G         Q  T   +  F   W +++                 
Sbjct: 220 VYDGVGTDPDMLIYGSDLSDEAAGQYSTQYTANFFGRPWTVRYQSTKNFDDFF---PGRA 276

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
             F  +A       I + G ++ +   +R+        E+A    K        +  K +
Sbjct: 277 PLFLFLAG------ILLTGMLAVALREIRLR--GDSMEEVAALRAKQISAREEEN--KSI 326

Query: 199 FDSLDFLVWHRDQAGDILWANIS------YKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
            ++    V   D+  +IL AN +       ++     G+ F + + E+  +        +
Sbjct: 327 MENTVVAVLILDEDRNILHANFAAIECFGCEEQGGMGGLPFSQFVTEAPDVPSNSGYNAL 386

Query: 253 ISSSALEK---NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
             + + +    +  +      +G  ++  IVR            +V+ E+    +L  T 
Sbjct: 387 GKTMSGDMLYLDLQQNGWVTLNGVRRTTAIVR------------NVTAEMGAVKELAITK 434

Query: 310 EILHNLTVA--IAIFDQNRYL--QFHNRSFVELWEID------LAFLATNPSNDELLEFL 359
           +          I +F+ +        ++++ ++ ++D                D+L +  
Sbjct: 435 QRYDMALAGSEIGVFEVDLRTGSSVVSQTWRKIMKVDDDEQDTQGIFMNRVHPDDLPDLF 494

Query: 360 RSANK--LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            +  K  + E        +   S Y+ S      W L +   +            +    
Sbjct: 495 EADRKCIMGET-------DRSVSEYRMSFGDSWRWMLSDAVVVERDEAGAAL-RMVGTQT 546

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T             K     I+    G+A+    GR    N A   L    +  +   
Sbjct: 547 DVTDLRHSRNALEASEKRFRTVIEAAPVGMAILDDQGRFVEVNGAMCDLTGYTQPEMLDE 606

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +  I           D   +  A++ +   + + +            E+ II     +
Sbjct: 607 LTMMRIVPG-------DDIKRMRKALLAATQMDIQEVYCE---------EHRIIHKNGGE 650

Query: 538 TMLTFVNVTDSVRAERALTEKNE-----ALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               F       +   A     +       +K D+IK+ FV  VS+ELR+PLT+I G   
Sbjct: 651 RWGLFNITWTYDKNADAHVYIAQVVDITDKKKLDQIKSEFVSTVSHELRTPLTSIKGALG 710

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+  S    L     + +E    ++  L N+VNDILDL  + +G +  +   + + +++ 
Sbjct: 711 LIDVSARDKLPETTMRLIEIARTNADRLTNIVNDILDLEKISSGEVDFDLMPVNIGEIVE 770

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              Q +      +  ++      +     ADR R +Q+ + ++SNA  +SS  + V +K 
Sbjct: 771 AAVQEMMPFAQTHENKLVCELPEQPVFATADRGRTMQVLANLISNACKYSSDHTEVCIKI 830

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
            +     I  V+N G  +PE     +F  F        R   G GLGL+I    +   GG
Sbjct: 831 EQLEDIAIVYVQNRGPGVPESFRNRIFQAFSQADGSDTRAKGGTGLGLNITRQIVRRQGG 890

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            +   S   G+T      P  +
Sbjct: 891 EIGFESIPGGLTVFWFTCPIAK 912


>gi|254415487|ref|ZP_05029247.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177668|gb|EDX72672.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 512

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/509 (17%), Positives = 185/509 (36%), Gaps = 44/509 (8%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L  + + + I   +  + F NR   +   +    +  +  +D   +      +   +  
Sbjct: 13  VLDQMPLGVCILRSDFIVLFWNRCLEDWTHLSRGQVLGHKISDYFADLNHPRYEKRLKSI 72

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNG--QTLHVIVTSNP-----RGGTIWMFENLTV-- 421
           +      IFS       H    +LP+G  +     VT+ P         +   +++T   
Sbjct: 73  FSGGPPTIFSA--QLHPHFIPAYLPDGQRRIQRTTVTAIPGLTEKDYYALLSIQDVTELS 130

Query: 422 -------------------QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                              +   E    +  +      D +   V+    D R    N  
Sbjct: 131 QQVQDYRKMRDRALAEVQERQRAEAALRSQEEQLQAVFDAVPGFVSWVNSDLRYLGVNRH 190

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
               +    N          I              D     I S   E  + Q     ++
Sbjct: 191 LADTFNLTPNHF--------IGQDVGFMKASPGFADFMRQFIAS--PEPAASQVIEAYVN 240

Query: 523 DSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           D+   Y I+     Q    +   +++TD  +AE  + +     ++  E+K+ FV   S+E
Sbjct: 241 DTTRSYLIVAQKYQQGRAAVSVGIDITDRKQAEEEVRKALAKEKELSELKSRFVTMTSHE 300

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            R+PLT I+   +LL+         K+  ++  I  +   L+ ++ D+  +   +AG ++
Sbjct: 301 FRTPLTTILSSAELLEHYGHKWTPDKKLTHIHRIQGTVKHLVQVLEDVTLIGKAEAGKLQ 360

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L   ++ L +  + + + +   + +++  +         +   D + L  I + ++SNA+
Sbjct: 361 LQPVSLDLVEFCHGLIEELQLSLGQHH-SLVFTHQCPNLNVCMDEKLLRHILTNLISNAI 419

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            +S     V L     +   IF +K+ G  IP    + +F  F    + G   G GLGL+
Sbjct: 420 KYSPNCGIVTLNLVCQDSSAIFQIKDQGIGIPLADQEKLFEAFHRAQNVGNISGTGLGLA 479

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           IV+  ++L GG ++++S     T     +
Sbjct: 480 IVKRAVDLQGGEITVNSQVGEGTMFTVTL 508



 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 45/147 (30%), Gaps = 8/147 (5%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +E+ E       L +     + +FD++   V   +     L  N   +   +T  +    
Sbjct: 145 AEVQERQRAEAALRSQEEQLQAVFDAVPGFVSWVNSDLRYLGVN---RHLADTFNLTPNH 201

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCE---TVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
            IG+     K            +          +    +   +SY IV      G A ++
Sbjct: 202 FIGQDVGFMKASPGFADFMRQFIASPEPAASQVIEAYVNDTTRSYLIVAQKYQQGRAAVS 261

Query: 293 --IDVSKEITVNDQLTHTYEILHNLTV 317
             ID++      +++         L+ 
Sbjct: 262 VGIDITDRKQAEEEVRKALAKEKELSE 288


>gi|73538740|ref|YP_299107.1| PAS [Ralstonia eutropha JMP134]
 gi|72122077|gb|AAZ64263.1| PAS [Ralstonia eutropha JMP134]
          Length = 1384

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/703 (15%), Positives = 241/703 (34%), Gaps = 54/703 (7%)

Query: 120  KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
                 +        L      F      +    I    R       LR      + +   
Sbjct: 564  PPSVLVSRDSDIVHLSDRAGRFLQYVGGEPSHNIIATVRPE-LRLELRTAIFQALQTNH- 621

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
              +++ +++       +   + +   V   D   +  +  I + +  ++       A+  
Sbjct: 622  --SVEARRVQLERDGRRFFVNMIARPV--HDVEANADFVLILFDEVEDSMAEADAAAVRP 677

Query: 240  SRKLFKEEIKKRMISSSAL-EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKE 298
             R     +++  +  +    +    ++ ++ E     + ++  +      A   ++ SKE
Sbjct: 678  QRDPMVSQLEGELQRTKEQLQATIEQSETSTEELKASNEELQAINEELRSATEELETSKE 737

Query: 299  I-------------TVNDQLTHTYEI---LHNL----TVAIAIFDQNRYLQFHNRSFVEL 338
                           +  ++  T +I   L NL     +     D+N  ++ +     ++
Sbjct: 738  ELQSINEELTTVNAELKSKVEETGKINDDLQNLITANDIGTIFVDRNIRIKRYTPRATDV 797

Query: 339  WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            + I  +            +  RS   +  +L +    ++    + S    +      +G+
Sbjct: 798  FSIIPS------------DIGRSLLDITHRLEYDKLSDDAAEAFDSLRLIEREVRSSDGR 845

Query: 399  T-----LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGP 452
                  L    T +   G +  F ++T +   E +            +   +  +  F  
Sbjct: 846  WYLARLLPYRTTEDRIDGAVLSFIDITSRRAAEERLRDGELRMRIVAESTRDYAIITFDD 905

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            DGR+   N     ++  +E+ +  G     +     R           A      +++R 
Sbjct: 906  DGRVTSWNVGAHRIFGYDESEML-GRTADVLFTPEDREQRVPAEEMAQARKYGRVEEDRW 964

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE---IK 569
             L+        S +   +  L  A          D          +N+   + D+    +
Sbjct: 965  HLRKDGTRFRSSGV---LSRLDTAGISGYAKIARDLDEVLPQGAPRNDPTWRQDDDHMRR 1021

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            + F+  VS+EL+ PL  I   ++L+  S     N   ++    I  +      +++D+LD
Sbjct: 1022 DEFLAVVSHELKHPLNLISASSELIARSAEARRNPVIARATATIRRTVQNQAQIIDDLLD 1081

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
            ++ +  G + L    I   +++  V  ++       N+ +     G      AD  R+ Q
Sbjct: 1082 MSRMRTGKLSLTRDPIDWREVVQRVCDAVKEDAASKNLTLHCNLSGTPVWINADVTRIEQ 1141

Query: 690  IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            +   ++SNA+ F+ +G  + +    +       VK++G  I   +   +F+ F   A+  
Sbjct: 1142 VVWNLISNALKFTREGDEIRVTLENEGDRARLVVKDSGHGIDAQVLPHIFDMFRQGANAR 1201

Query: 750  QRR-GVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
             R+ G+G+GLS+V+  + LHGG VS SS       T    +PS
Sbjct: 1202 GRQSGLGIGLSLVKEIVTLHGGTVSASSPGLGHGATFTVELPS 1244


>gi|83954248|ref|ZP_00962968.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal
           [Sulfitobacter sp. NAS-14.1]
 gi|83841285|gb|EAP80455.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal
           [Sulfitobacter sp. NAS-14.1]
          Length = 669

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/406 (23%), Positives = 168/406 (41%), Gaps = 38/406 (9%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I++   L     L         +  E ID + EG   F    R+ + N  +R       +
Sbjct: 262 IFLLGVLLAFRRLALNQTNAHALLAEAIDAIDEGFIAFDDKERVMVVNQKYRDYHPQIAD 321

Query: 473 RLSPGTHIRNIAATCS-RYYNESDGWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSI 530
            + PG  +  +    + R  + S      A +       R   Q  L+ + +D+ L+ + 
Sbjct: 322 LIVPGVTMGELVVNWANRTESLSGSKSKQAWVRERLQRFRNPGQAFLQDIGNDNWLKVTE 381

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              P+  T+  + +VT   RA+ A          AD  K  F+ +VS+ELR+PLT I G 
Sbjct: 382 AKTPHGYTVGIWTDVTAEKRAQEA-------AEAADREKTEFLNNVSHELRTPLTVIFGR 434

Query: 591 TDLLKTSKLGSLNS---------------------KQSQYVEYI----SASSTILLNLVN 625
           +  ++ S                            +  +++       + SS  ++ LV 
Sbjct: 435 SSFMRHSDKMPQAQRLMSALTADGSGCPKSAAAAIEYQKFITDQGAGIAESSQHMIRLVE 494

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD   V  G ++L+ +   L+++   V Q +        + +    DG   +  AD+ 
Sbjct: 495 DLLDWTKVSRGQLELDMAPTQLDEIARTVTQELQPAAEAKGLTLTYAGDGPAATV-ADKV 553

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ QI   +++NA+ F+S+G  + L       + +FSV + G+ I E+    VF RF   
Sbjct: 554 RVKQILYNLITNAIKFTSEG-KIHLSMLHSTDEIVFSVTDTGNGIAEEDASRVFQRFQQV 612

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 Q  G+GLGL+I E    LHGG +S+ S     +T +  +P
Sbjct: 613 DGSMTRQNGGLGLGLAISEQLAELHGGSLSLESKLGVGSTFSLTLP 658



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
              +      E +  +      FD    +   N+ + +        +    +  EL+   
Sbjct: 277 NQTNAHALLAEAIDAIDEGFIAFDDKERVMVVNQKYRDYHPQIADLIVPGVTMGELVVNW 336

Query: 360 RSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
            +  + L    + + W       +++         + N   L V     P G T+ ++ +
Sbjct: 337 ANRTESLSGSKSKQAWVRERLQRFRNPG-QAFLQDIGNDNWLKVTEAKTPHGYTVGIWTD 395

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLS 444
           +T +   +       + + E ++++S
Sbjct: 396 VTAEKRAQEAAEAADREKTEFLNNVS 421


>gi|254413786|ref|ZP_05027555.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179383|gb|EDX74378.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1038

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 158/414 (38%), Gaps = 56/414 (13%)

Query: 424 DLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            LE +   L K +       ++  EG+    PDG    +NPA   ++       SP   I
Sbjct: 219 KLERQMQALQKAENNYRSIFENAVEGIYQTTPDGHYISANPALARIYGYN----SPAELI 274

Query: 481 RNIAATCSRYYNESDGWDLF------AAIITSFDDERKSLQGTLELLSDS---VLEYSII 531
            ++     + Y +      F         ++ F+ +      +L  + ++   V + +  
Sbjct: 275 ASVTDIGQQLYVDPSKRAEFINRMQQQGAVSHFEVQVYRRDRSLIWIMENARAVRDRNGT 334

Query: 532 PLPNAQTMLTFVNVTDSV----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            L    ++        +     +  RAL +  +   KA++ K+ F+  +S+E+R+P+  +
Sbjct: 335 LLYYEGSVEDITQQKQAQTALEQQNRALKDARQVAEKANKAKSEFLAMMSHEIRTPMNGV 394

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T LL  ++   L   Q  + E I  S   LL ++NDILD + +++G + L      L
Sbjct: 395 IGMTGLLLDTE---LTPDQRHFAETIRNSGDALLTIINDILDFSKIESGKLDLEEQPFEL 451

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
            D + +    +A K     + +    D  +      D  R+ QI   +LSNA+ F+  G 
Sbjct: 452 RDCVEDALDLLAAKAAAKKLELGYRFDSHIPDQVRGDVTRVRQILVNLLSNAVKFTEAGE 511

Query: 707 TVILKAARDNG------------DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRR 752
            V+    R                  F+V + G  I       +F  F  V ++   Q  
Sbjct: 512 IVVSVTGRKLENEADSHPDSNRYHIQFAVNDTGIGIAPQRMHRLFKPFSQVDSSTSRQYG 571

Query: 753 GVGLGLSIVESFINLHGGHVSISSSD------------------EGVTTINCRI 788
           G GLGL+I +    + GG + + S                    E  +T    I
Sbjct: 572 GTGLGLAICKQLSAMMGGTMWVESHGTVAGNPPAGWQLSAEQPSESGSTFYFMI 625


>gi|153837140|ref|ZP_01989807.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AQ3810]
 gi|260900476|ref|ZP_05908871.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
 gi|149749557|gb|EDM60303.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AQ3810]
 gi|308106963|gb|EFO44503.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
          Length = 858

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 157/399 (39%), Gaps = 34/399 (8%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F+++   ++    +     +   +  +     + V+   G +   NPA R   
Sbjct: 331 GGSDIEEFDHIGSTLESTFEELEAQKRSFRDLFNFALSPIMVWSEAGVLIQINPAARK-- 388

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                 L     I  +      + ++       AA       +  +L G    + D V  
Sbjct: 389 -----ELVIENDIETMHPVFKGFKDKLVPHLRMAA-------QGATLTGVNVPIGDKVFR 436

Query: 528 YSIIPLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ P+      +  ++   ++T  + AE+          K+ + +  F+  +S+E+R+P
Sbjct: 437 WNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARREAEKSAQARADFLAKMSHEIRTP 496

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   LLK S       +Q   ++ +  S   LL ++NDILD + ++ G   +   
Sbjct: 497 INGILGVAQLLKDSVEA---EEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKH 553

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                D +  ++           + + +    DG +     D+ RL QI   ++SNA+ F
Sbjct: 554 PFSFADTMRTLENIYRPICENKGVELVIENRLDGNV-EIFTDQVRLNQILFNLVSNAVKF 612

Query: 702 SSKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
           +  G  V L A        DN   +  + + G  I  D    +F  FV       R   G
Sbjct: 613 TPSG-CVRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDEMFEPFVQEEATTTREYGG 671

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGL+IV++ +++  G V + S     TT    +P K+
Sbjct: 672 SGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVKD 710


>gi|90423379|ref|YP_531749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90105393|gb|ABD87430.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 923

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/563 (17%), Positives = 195/563 (34%), Gaps = 38/563 (6%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA--IDVSKEITVNDQLTHTY 309
             + +A++ +  E    L   +  +Y  +        A  A  +      T +  L   Y
Sbjct: 92  AEAMAAIDASKLERRDALLAASRDAYADLERSRPLLSAITAQPLPARDMATADPWLMAMY 151

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
            +   L  A      +  +   +    EL ++  A              LR+  +    L
Sbjct: 152 NVAERLQEASIAVGNDARML--DSEIAELVQLRQASYVIRERYGRPCSALRANVQRSLPL 209

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           +    +E + +  +    +   W            +       I     +  ++  +   
Sbjct: 210 D----REKLANWREGVGEYTARWRYLESYLSRPGASPQLVEDVI--NGRIATEIVQKRMD 263

Query: 430 NTLVKVQGETIDHLSEG----VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             L  + G  +  +       + V   D  +KL N A        E+R      +  +A 
Sbjct: 264 EVLYGLDGSGLPAMPAAEWSELCVTAYDPILKLGNDALDQAIAHAEDR-KTRASLMLLAM 322

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                            +        K L  T+  LS       +        M      
Sbjct: 323 AVVAVAGILLVGFWIQTVRRRLSTPMKMLVDTIGRLSRQEFALPVPATGYPDEMGAMAGA 382

Query: 546 TDSVR------------AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            + +R             E+A   + E   +    K  F+  +S+E+R+PL  I+G   L
Sbjct: 383 LEELRVGALKAQHLQRLLEKAQEVEIERANEVSRAKTDFLATMSHEIRTPLNGILGMAQL 442

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  S    L+++Q Q+++ ++ S ++LL ++NDILDL+ ++AG M+L       ++LL  
Sbjct: 443 LDDS---PLSAQQRQWLDAVAQSGSLLLAILNDILDLSKIEAGRMELESIAFSPDELLRT 499

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--- 710
           +  ++  +     +             + D  ++ Q+   ++ NA+ F+  G  V+    
Sbjct: 500 IAAAMTPQAAGKGLAFLTEYPALPARLIGDPAKISQVLLNLVGNAVKFTHSGEVVLSVNW 559

Query: 711 ---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
              +   D G   F V + G  I       VF+ F  +     RR  G GLGL+I +  I
Sbjct: 560 APDEQRPDRGRMEFRVTDTGIGIARQAVPHVFDPFSQSDSSITRRFGGSGLGLAICKRII 619

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
           +  GG +++ S+    +     +
Sbjct: 620 DAMGGKITVESTLGCGSVFTVVL 642


>gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 834

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 13/250 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L    E    A E K+ FV +VS+E+R+P+  I+G   L++ +    L+++Q+
Sbjct: 201 RKQTEKELILAKEQAETASEAKSFFVANVSHEIRTPMNAILGMCYLMQRT---DLDARQT 257

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++  I+ ++  LL L+NDILD + ++AG +K+      L+ +L ++ Q  A K  E  +
Sbjct: 258 DFLNRINVAAKSLLALINDILDFSKIEAGKLKIENRPFSLDGVLQQLAQMEAAKAAEKQL 317

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG------DF 719
            +       +      D  RL QI   +++NA+ F+ +G   V ++  +           
Sbjct: 318 ELIFSVSQDVPQRLKGDPDRLGQILLNLVNNAIKFTERGKIVVTVRLYKKEAGDEGPVML 377

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            FS+++ G  I       +F  F         +  G GLGL+I +  + L GG +   S+
Sbjct: 378 RFSIRDTGVGIAPKNLSRLFAAFSQVDSRLSRRYEGTGLGLAICKQLVQLMGGKIWAKST 437

Query: 778 DEGVTTINCR 787
               +T    
Sbjct: 438 PGKGSTFVFT 447


>gi|315283630|ref|ZP_07871770.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
 gi|313612735|gb|EFR86737.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
          Length = 591

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/365 (21%), Positives = 150/365 (41%), Gaps = 27/365 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     + +L  GV +   D ++ ++N     +    E              T 
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINIDKQVIMTNRTMYQILGETEI-------------TG 292

Query: 488 SRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +Y     + L   I  +F+ +  +  +  L    + +L+ S+ P+      +T +   
Sbjct: 293 KPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDASVSPILAENGEITGII-- 350

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      +R  + +++ FV +VS+EL++P+T + GF + L    +       
Sbjct: 351 -------LLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLL 402

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++  I   S  L  L+ DIL L+ ++   +  N   + ++D++ +  ++I     E N
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENIEIVDMDDVIEQSARTIFEMATEKN 462

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I++ +        +   DR +L QI   +LSNA++++     V +K      + I  V +
Sbjct: 463 IQVTIPEKTSTPVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKLIDHEAEVIIEVTD 522

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      VF RF            G GLGLSIV+  +   GG + + S +E  +T
Sbjct: 523 NGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGST 582

Query: 784 INCRI 788
               +
Sbjct: 583 FRVTL 587


>gi|229148015|ref|ZP_04276354.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
 gi|228635440|gb|EEK91931.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
          Length = 613

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|86605618|ref|YP_474381.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
 gi|86554160|gb|ABC99118.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
          Length = 573

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 10/249 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + L +       A+++K+ F+ + S+ELR+PL  IIGF  L+      S   ++  +
Sbjct: 295 QKNKELEQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIRLVLDGMAES-REEELDF 353

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++    S+  LL L+ND+LD+A ++AG M+L +    L  L  +V+     +  +  +++
Sbjct: 354 LQEAYRSALHLLALINDVLDIAKIEAGKMQLQFEPCDLRALFKDVEAKTGLQAKQKGLQL 413

Query: 670 KVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVK 724
                          D QRLLQ+   ++ NA+ F+ KGS V ++A     D G     V 
Sbjct: 414 SFHLPPTPDRIWLYGDYQRLLQVMLNLVGNAIKFTPKGS-VTVRADLLPGDPGMARIRVI 472

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-V 781
           + G  +  +  + +F  F        R   G GLGL+I +  +   GG ++  S  EG  
Sbjct: 473 DTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYSLGEGLG 532

Query: 782 TTINCRIPS 790
           +T+   +P 
Sbjct: 533 STVTFTVPL 541


>gi|30023490|ref|NP_835121.1| two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206970358|ref|ZP_03231311.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218232571|ref|YP_002370240.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228942614|ref|ZP_04105146.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228955716|ref|ZP_04117711.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228975544|ref|ZP_04136096.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982180|ref|ZP_04142469.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|229072930|ref|ZP_04206126.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|229112878|ref|ZP_04242409.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|229130711|ref|ZP_04259664.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|229153623|ref|ZP_04281800.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|229193716|ref|ZP_04320657.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|296505893|ref|YP_003667593.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|29899051|gb|AAP12322.1| Two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206734935|gb|EDZ52104.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218160528|gb|ACK60520.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228589741|gb|EEK47619.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|228629852|gb|EEK86504.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|228652728|gb|EEL08613.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|228670557|gb|EEL25870.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|228710176|gb|EEL62154.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|228777532|gb|EEM25810.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|228784154|gb|EEM32181.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228803944|gb|EEM50568.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228817040|gb|EEM63133.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|296326945|gb|ADH09873.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|326943263|gb|AEA19159.1| two-component sensor kinase yycG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 613

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|326203106|ref|ZP_08192972.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325986752|gb|EGD47582.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 594

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/357 (23%), Positives = 161/357 (45%), Gaps = 25/357 (7%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
             + I  +SEG+  F  + +    N A   +    +   S             R ++  +
Sbjct: 263 MSDIISSISEGLVAFDLELKPLNYNNALSDIMNRSQPYKS---------ELLVRDFDALE 313

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              L   +I    +E+KS Q  ++   +  L++++ P+ +    +T   V         L
Sbjct: 314 INSLLTTVI----NEKKSCQ-IIKTWVNKKLKFTLSPIIDNNENVTGCVV---------L 359

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +      + ++++  F+ +VS+E R+PLT I G  + L    +        +Y   I +
Sbjct: 360 VQDISESERLEQLRKDFIANVSHEFRTPLTVIKGSIEALNDGAIEK-KEDIERYYSRILS 418

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            + IL  LV D+L+L+ + +G + +N   + +  LL++V +S+ T   +  I I+     
Sbjct: 419 ETKILQRLVGDLLELSRLQSGKISVNEEKVHIPSLLSDVTKSMQTIAVKKQISIEYSPIE 478

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            +   + D  RL Q+F+  + NA+ +S + + + ++ A   G     + + G  I E+  
Sbjct: 479 AVPPVLGDYDRLRQLFTIFIDNAIKYSPEKTKISIEIAV-KGTLEIKIADKGYGISEEEL 537

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             V+ RF       +  G GLGLSI +  I LHGG+V++ SS E  TT+   +P  E
Sbjct: 538 PYVWERFYKTDKSRESNGTGLGLSIAKHLIQLHGGNVTMQSSLEEGTTVTVYLPYSE 594


>gi|228911304|ref|ZP_04075108.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
 gi|228848322|gb|EEM93172.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
          Length = 588

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 306

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 307 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 366

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 367 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N V         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 426 HRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 484

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 485 ALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|330684530|gb|EGG96241.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus epidermidis VCU121]
          Length = 506

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 161/377 (42%), Gaps = 36/377 (9%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +L  +   L   Q         T++++   V +    G I ++N A+  ++ + +  +  
Sbjct: 150 ELARRLQKLNNRQKIQSNRLKTTLENIPSSVLMIDKHGEIVVANSAYYEVF-SPDQSVEN 208

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPL 533
            ++I  I     +             I+ SF  E+   + ++  +  +     + S +P+
Sbjct: 209 KSYIGFINDKIEKL------------IMESFRTEKVIYEQIEVDINNVHTKYFDVSCVPI 256

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +         V         +      L+K + ++  FV +VS+EL++P+T+I GF + 
Sbjct: 257 LSKSKKKLQGMVV--------VLHDITNLQKLENLRREFVANVSHELKTPITSIKGFAET 308

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L        +S  + ++  I   S  + +LV D+LDL+ ++    ++  S + L++L   
Sbjct: 309 LIEGAKNDEDS-LNMFLNIILKESNRIESLVMDLLDLSHIEQQN-EITTSYMNLSELAYT 366

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++  +    NI I+   +  +  F A+  ++ Q+ + +LSNA+++S+  + VI+   
Sbjct: 367 TIDNLQNQAQNKNITIESNIEQDVI-FKANENKIAQVITNLLSNAINYSTNDNKVIVSVY 425

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
           R+       +++ G  I  +  K +F RF            G GLGLSI +  +  H G 
Sbjct: 426 REGKKVNLEIQDFGIGISAEEQKHIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGR 485

Query: 772 VSISSSDEGVTTINCRI 788
           +S+ S     +T     
Sbjct: 486 ISVVSRLNEGSTFKVTF 502


>gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 710

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 10/259 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T++   N+    R +  +        +A + K  F+  V++E+R+PL  IIGF+ L+ T 
Sbjct: 302 TIIIIRNLVKLYRNDVTIVRYASMATEAAKQKGEFLAQVTHEIRTPLNAIIGFSQLMDTQ 361

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+ ++ + V+ I +SS ILL LVND+LD + +++G + L Y      D +NEV   
Sbjct: 362 R---LDGQEKESVDAIQSSSRILLTLVNDLLDFSKLESGKLTLQYQPFNPVDAVNEVVAL 418

Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +     E NI I+  I+ G     + D  R+ Q+   +LSNA+ F+     V+++A+ D 
Sbjct: 419 MRVLASEKNIEIEPKIAIGNRVCLLGDEFRVKQVVINLLSNAIKFTPARGKVVVEASLDQ 478

Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGG 770
            +         VK++G  I  +  K +F  F    A    + G GLGL+I +  + LHGG
Sbjct: 479 SEGQKKCLKIRVKDSGIGIAPEHLKEIFEDFKQIGAASAGKPGTGLGLAICKRIVELHGG 538

Query: 771 HVSISSSDEGVTTINCRIP 789
            +S+ S     +     IP
Sbjct: 539 KISVESVVGKGSEFKIGIP 557


>gi|218249059|ref|YP_002374430.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8801]
 gi|218169537|gb|ACK68274.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8801]
          Length = 1166

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 124/678 (18%), Positives = 241/678 (35%), Gaps = 80/678 (11%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            +    +E +    + ++  +  +  K L      +V   D+ G +++ + + +K     G
Sbjct: 506  IKAYRNERSRQQAEKEREVSE-NKLKALLKYSSDIVSVFDEQGQLIYTSPAVEK---IYG 561

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-----GNNKSYKIVRVLNS 285
               ++   ++         +  + ++  +       +   H      N +   I  V ++
Sbjct: 562  FSPEELQNKNTFELIHPDDRSEVRNAFCQLLEDPKNTIRVHYRYQTKNQRFIWIETVASN 621

Query: 286  F-------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFD------QNRYL 328
                    G    + D+S      + L  + E    L   I     + D        +  
Sbjct: 622  QLQNPNIQGIVVNSRDISHRKESEEALRVSEERFRQLAENIREVFWMIDVSTVNPTEQRT 681

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS-VYKSSET 387
             + + ++ ++W      L  NP         R   +     +++      F  +  +   
Sbjct: 682  LYVSPAYQQVWGHKPEELYENP---------RQWIQAVHPDDFERISHEFFDKLLITGFD 732

Query: 388  HKDTWHLPNGQTLHVIVTSNPRGGTIWMF-------ENLTVQVDLETKYNTLVKVQGE-- 438
            H+     P+G    +     P    +  F       E++T Q   E +   L     E  
Sbjct: 733  HEYRIIRPDGTIRWIRDRGFPIKNQVGEFCRVTGLAEDITKQKQTEEEIRGLNAALAEQN 792

Query: 439  ----------------TIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIR 481
                              + L + V V   +  ++   N  F             G  I 
Sbjct: 793  RQLEQRVAQRTAELEMLFNTLPDFVFVVERETMKLSFCNQMFAQGIGFTNRSEVEGKTIF 852

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--- 538
                T    Y       +F +      +E+  L        D   +   +PL   Q    
Sbjct: 853  ECFPTEMANYFAQQNEQVFNSGEILHVEEKVCLPN-----GDRYFDTYKVPLRTPQGEIY 907

Query: 539  --MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              + T  ++T+ V  ++ L ++   L  A++  +SF   VS++LR+PL +I GF + LK 
Sbjct: 908  ALLGTGRDMTELVNTKKVLMQRTTQLELANQELDSFCYSVSHDLRAPLRHIHGFVNALKQ 967

Query: 597  SKLGS---LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
              + +    + K   Y+E I  SS  + +L++ +L L+ V  G  +L   T+ LN ++  
Sbjct: 968  QLMINNTLEDPKVLHYLEVIENSSQKMAHLIDGLLTLSRV--GRRELVLHTVDLNAVVKT 1025

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                ++  +      IK    GKL +   D   L Q+F+ +L NA+ FS   + + +K  
Sbjct: 1026 AINLLSP-LENKTHTIKFEV-GKLPTVQGDNALLQQVFTNLLDNALKFSRDRNPISIKIN 1083

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  IF + +NG     +    +F  F     +    G G+GLSIV+  I+ HGGH+ 
Sbjct: 1084 TLEDGTIF-ISDNGVGFDMEYADQLFGAFQRLHSQAIFEGTGIGLSIVQRIIHRHGGHIW 1142

Query: 774  ISSSDEGVTTINCRIPSK 791
              S  +   T    +P K
Sbjct: 1143 AESQVDKGATFYFTLPLK 1160



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 93/312 (29%), Gaps = 27/312 (8%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            Y + ++ N      I +   ++  + ++      IL  L       + +  +  +    
Sbjct: 47  WYSLKQLNNQLKNEIITLQQDQKFLLEEKREELRTILEILPDLFFRMNSDSTILDYRGES 106

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
                +        P  +           LPE +  + W++ I  V  S+      + L 
Sbjct: 107 KSELYVSPELFLGKPMIE----------ILPEPVA-QAWRDAIAQVLGSNTLVTLEYQLS 155

Query: 396 NG---QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
                Q     +        I +  N++ Q   E             I++L   + V   
Sbjct: 156 TSNAEQYYEARLVPFAHQQIIAIVRNISQQKQTEINLKKSQDFLQTIINYLPVALFVKDG 215

Query: 453 D----GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                G++ L N A   +     +++   T      A  + +Y + D       +     
Sbjct: 216 KPEKFGQLLLVNKACEEMMGLVSSQVVGKTGHDLFPADQANFYEQKDREAFANGVPEDIP 275

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALR 563
           +E              +L    +PL +        +    ++T   +AE  L + +  LR
Sbjct: 276 EEPIDSYNA----GKKILHTIKVPLYDQNNDPEYLVCISEDITRQKKAEIDLEKSHNILR 331

Query: 564 KADEIKNSFVQH 575
                ++ F+  
Sbjct: 332 TISLAQSQFIAD 343


>gi|294777096|ref|ZP_06742553.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|319643455|ref|ZP_07998078.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|294448965|gb|EFG17508.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|317384860|gb|EFV65816.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1045

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 137/245 (55%), Gaps = 6/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  + E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L  ++       +
Sbjct: 664 ERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQE---K 720

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+  I +++T+LL L++DILDL+ ++AG ++  YS + LND+++E++     +   N 
Sbjct: 721 QEYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTESNG 780

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++ V           ++ RL+Q+ + +L+NA  F+S+GS +       + +  F VK+ 
Sbjct: 781 IQLIVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLCDKELYFYVKDT 839

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  IP D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T   
Sbjct: 840 GCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWF 897

Query: 787 RIPSK 791
            IP +
Sbjct: 898 TIPYQ 902


>gi|254883730|ref|ZP_05256440.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254836523|gb|EET16832.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 1045

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 137/245 (55%), Gaps = 6/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  + E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L  ++       +
Sbjct: 664 ERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQE---K 720

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+  I +++T+LL L++DILDL+ ++AG ++  YS + LND+++E++     +   N 
Sbjct: 721 QEYINIIESNNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTESNG 780

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++ V           ++ RL+Q+ + +L+NA  F+S+GS +       + +  F VK+ 
Sbjct: 781 IQLIVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLCDKELYFYVKDT 839

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  IP D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T   
Sbjct: 840 GCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWF 897

Query: 787 RIPSK 791
            IP +
Sbjct: 898 TIPYQ 902


>gi|254411811|ref|ZP_05025587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181533|gb|EDX76521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 562

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/503 (20%), Positives = 200/503 (39%), Gaps = 49/503 (9%)

Query: 311 ILHNLTVAIAIF---------DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
           ++ +L+  +  F          ++  L F     V +  I +  LA    + +L   +R+
Sbjct: 22  LVQDLSDGVPNFAESPQDLKLGEDVRLAF--PELVGMEGIMMDILAGRQISFQLAGIVRA 79

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
                +Q     +  ++   +   E                          I +F+++T 
Sbjct: 80  DQHHTDQAPDSPFYFDLHICHHQDEN---------------------ENYLILLFKDVTE 118

Query: 422 QVDLETKY-------NTLVKVQ-------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            + L+ K        N L+           + I  +++ + V    G IK +N A ++L+
Sbjct: 119 WMMLQQKLIQKSNETNLLLSALTHSKNYIDKIISSMADALLVTTASGDIKTANRAAQTLF 178

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             + + L  G  I  I      + N  +     ++     +    + QG    ++ S   
Sbjct: 179 GYKIDELV-GQPITKIIK-NQEFLNNLNHLSPDSSTFQDIELNCLTKQGETVAVAFSCSA 236

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                  +   +    ++T     E  + +  E  ++  E+K+ F+   S+E R PLT +
Sbjct: 237 LITDLEGSLNFVYVGRDLTQRKLLEAEMLQALEREKELTELKSRFISMTSHEFRVPLTAV 296

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
              T+LL+         K+ ++   I  S   +  L++D+L +   ++G ++ N   + L
Sbjct: 297 YSSTELLEQYSHNWAEEKKLKHFNRIKDSVNRMTTLLDDVLIVNKAESGKLEFNPQPLNL 356

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           N L  ++ + I   +      I  I+ G+      D + L  I + +L+NA+ +S  GST
Sbjct: 357 NQLCQDLVEDIELGI-GKQHEISWINSGRASKACMDEKLLRHILTNLLTNAVKYSPLGST 415

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           V         + IF +K+ G  IP +  K +F  F    + G  +G GLGLSIV+  ++L
Sbjct: 416 VQFNCHCREQEVIFEIKDQGIGIPPEDQKRLFESFHRAKNVGNIQGTGLGLSIVKKSVDL 475

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           HGG +++ S     TT    +P 
Sbjct: 476 HGGKLAVHSEVGVGTTFKVTLPL 498


>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
 gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
          Length = 1235

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 15/285 (5%)

Query: 515 QGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIK 569
            G +EL S+   E  I+       A  +  +    +   +ER   L E  +    A + K
Sbjct: 423 SGAIELPSNRKDEVGILANAFKSMATRIFDYNTNLEQKVSERTSELVEARKKAESASKAK 482

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           ++F+ H+S+E+R+P+  IIG + L+  ++   LN +Q  ++E + +SS +LLN +ND+LD
Sbjct: 483 SNFLAHMSHEVRTPMNAIIGLSQLMLKTQ---LNKRQRDFMEKVLSSSDVLLNTLNDVLD 539

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
            + ++A  + L+Y+   + D+L  V    A K     + + +  D K+   ++ D  RL 
Sbjct: 540 YSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQYKGVELLLDIDQKVPFQWIGDPIRLG 599

Query: 689 QIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QI   + SNA+ F+ +G  +I +K    +       FSV + G  I ++    +F  F+ 
Sbjct: 600 QILINLASNAVKFTEQGEVIIRVKLLEQHNQQSTLRFSVIDTGIGIEQERINLLFTPFMQ 659

Query: 745 NAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  +  G GLGL+I      L GG + + S     +  +  
Sbjct: 660 MDSSITRKYGGTGLGLAISRQLTELMGGRIWVESQLNVGSQFHFT 704


>gi|332701444|ref|ZP_08421532.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551593|gb|EGJ48637.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 697

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/545 (18%), Positives = 202/545 (37%), Gaps = 46/545 (8%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL---- 328
                +I  +           D +              IL ++   + +      L    
Sbjct: 8   EQLLLEIPELRKQLERLRYPFDGASRHWQEASQVILDSILESIPEGVIVSGGPSRLPVLS 67

Query: 329 -QFHNRSFV----ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI-FSVY 382
              + R  +    +L  + LA L        +L+      +  E   +  ++  +   V 
Sbjct: 68  ISRYGREMLGGGSDLIGLSLADLLGPW---NMLD--ADETQGLELSEFPLYRAVMEREVI 122

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGT-------IWMFENLTVQVDLETKYNTLVKV 435
           ++ E        P+G  + ++  + P  G        +  +  +    + E   +   + 
Sbjct: 123 RNCEM---ILVRPDGAHIPILCNAAPILGLNREVLGGVCSWREIPELKEAEKILHKRHQE 179

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +++  + +A      R    NPA  +L      ++  G   + +  +      E++
Sbjct: 180 FKALVENNPDVIARLDHGHRFLYLNPASEALSGLAPVQI-IGKRFQEVIKSSDEDMQEAE 238

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVR 550
              +   ++ +  ++   L   L      + +  I P  +A+      +    +VT   +
Sbjct: 239 --KVIERVLRTGKEDSVELPIRLNGRR-KIFQIRIAPERDAEGSIRTVLCIARDVTRIRQ 295

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+ L +  E    A   K+ F+  +S+E+R+PL  I+G T+LL     G  N     Y+
Sbjct: 296 QEQMLRKAKEEAEMASRAKSEFLASMSHEIRTPLGGILGMTELLMARVAGDSN---QSYL 352

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  S+  LL ++NDILDL+ ++AG + L        + +  + +    +  ++ +   
Sbjct: 353 ELIENSAMSLLGILNDILDLSKIEAGKVDLEPEEFEFREEMLTLAEPFRIQAEKSGLSFD 412

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVK 724
           V  D  +      D ++L QI   +LSNA+ F+ KG  V L         D     F+V 
Sbjct: 413 VRLDPAIPERMHGDLEKLKQILRNLLSNAVKFTVKGG-VTLTTDLADKCGDQCRLRFTVS 471

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP    +S+F  F    +       G GLGL+I +    + GG +S+ S     +
Sbjct: 472 DTGIGIPRHKQRSLFGMFEQLRDHMSKNCAGTGLGLAISKRLAGMLGGDISLESEKGLGS 531

Query: 783 TINCR 787
           T    
Sbjct: 532 TFTFT 536


>gi|330989302|gb|EGH87405.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 778

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 8/370 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIR 481
           + E       +     I+ + + G+     +G +   N     +    E   +     + 
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVF 318

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   C ++ + +          T  +  R+   G+    S  +                
Sbjct: 319 YLPEECPQHPDMALREATVNGRYTE-ESWRRRKDGSRFWASVVITAQYDGNDELRGFSKI 377

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S
Sbjct: 378 TRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS 437

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++  
Sbjct: 438 ----QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPM 493

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + NI +K +         VADRQRL+Q+   +LSNA+ ++     V ++  + +    
Sbjct: 494 AADANIELKALPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVT 553

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++   
Sbjct: 554 VSVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAE 613

Query: 781 VTTINCRIPS 790
                  +P 
Sbjct: 614 GCRFILELPL 623


>gi|206563353|ref|YP_002234116.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039393|emb|CAR55359.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 660

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 23/371 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D   + +       RI   NPA  S++  +  + +    +  IA    R +   
Sbjct: 142 LLRRVVDASPDAIVGTDAARRITSWNPAAASIFGIDTTQANGRDIVTMIAPRWLRRHPVP 201

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT------------F 542
             +    A +   D       G     +     ++  P+ +AQ   T             
Sbjct: 202 ASFADLRAPVGPLDVLCVRPDGGRFRAT-----FAASPIVDAQGNCTGLSLTLREAGERR 256

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +    +R+ R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L+ +     
Sbjct: 257 RDERHHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRNADGPGF 316

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                Q V  I  S+  L ++V D+LD +++  G ++L    + L  ++ +  + +    
Sbjct: 317 ---VQQAVAAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATA 373

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N + +            AD +RL Q+ S +LSNA+ F+  G  + +   R       S
Sbjct: 374 QANGLVLSTEYAMPACVIPADGERLRQVLSNLLSNAIKFTPPGGRINVSLTRAGERVRLS 433

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-E 779
           V + G  I  +    +F  F     A    +RG+GLGLSIV +   LHGG V  +S+   
Sbjct: 434 VSDTGQGIAPERLPHLFETFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAG 493

Query: 780 GVTTINCRIPS 790
             TT+   +P+
Sbjct: 494 RGTTVTVTLPA 504


>gi|117619924|ref|YP_857513.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561331|gb|ABK38279.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1089

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 163/387 (42%), Gaps = 37/387 (9%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +  LE     +  +     + L   + V    G++ L N  + ++               
Sbjct: 559 RRQLEEHVRFIEALG----ESLPHPIVVRDKSGKVILCNSKYLAILNAP----------- 603

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYS---------II 531
            I       + E     L A  IT+ + D ++ LQ    +LSD +             ++
Sbjct: 604 -IERVLGTSFAEGLKGLLGAEAITTLEQDFQQVLQSGSPILSDRIFSQRGPRQFVYHWMV 662

Query: 532 PLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           P  +     +  +  ++++T+    E AL    E   +A   K+ F+  +S+E+R+P+  
Sbjct: 663 PYFDYRGAISGVINGWIDITERKTMEEALRRAKEQADRASRAKSDFLATMSHEIRTPMNA 722

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G  +L   S+  +L     + +   S S+  LL+L+ D+LD++++++G + L      
Sbjct: 723 ILGMLEL--ASQDPALAPYTGEQLRIASESANGLLDLIGDVLDISSIESGQLTLAPEPCE 780

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  LL+ V ++ A    +  +  +V  D  L   + D  RL QI   +L NA+ F+ +G 
Sbjct: 781 LAPLLHSVARAFAGMAKQKGLSYRVELDP-LPRVLIDGPRLRQIVFNLLGNAIKFTERGE 839

Query: 707 TVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
             +   L  +         ++++G  I  D    +FN F       Q  G GLGL+I   
Sbjct: 840 VSLQASLVGSAQQPQLHLLIRDSGVGIAPDKLPGLFNPFYRAHDPYQFAGTGLGLNIARM 899

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
              L GG +++SS     T +  R+P 
Sbjct: 900 LCQLMGGKIAVSSELGAGTELRIRLPL 926


>gi|71736179|ref|YP_274133.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556732|gb|AAZ35943.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 778

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 8/370 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIR 481
           + E       +     I+ + + G+     +G +   N     +    E   +     + 
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVF 318

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   C ++ + +          T  +  R+   G+    S  +                
Sbjct: 319 YLPEECPQHPDMALREATVNGRYTE-ESWRRRKDGSRFWASVVITAQYDGNDELRGFSKI 377

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S
Sbjct: 378 TRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS 437

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++  
Sbjct: 438 ----QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPM 493

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + NI +K +         VADRQRL+Q+   +LSNA+ ++     V ++  + +    
Sbjct: 494 AADANIELKALPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVT 553

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++   
Sbjct: 554 VSVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAE 613

Query: 781 VTTINCRIPS 790
                  +P 
Sbjct: 614 GCRFILELPL 623


>gi|39937477|ref|NP_949753.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|192293263|ref|YP_001993868.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|39651336|emb|CAE29858.1| sensor histidine kinase with PAS/PAC and response regulator
           receiver domains [Rhodopseudomonas palustris CGA009]
 gi|192287012|gb|ACF03393.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 873

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 158/380 (41%), Gaps = 16/380 (4%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F+NL  + +LE +   +  +  +   + S+ +      GR+      F  + K   + L 
Sbjct: 225 FDNLRAKFELERQTEIISLLLKDFQANASDWLWQTDAHGRLVHVPERFVEVAKLPPSLLI 284

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                  I   C      + G    AA +   +     +   +   +  +   +  P+ +
Sbjct: 285 GAPLADVIGMLCPEDGRCAMG---VAAKMAQREPMNDLVVHVVIGGTPRLWSLTAKPMFD 341

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A               ER    + E     +  K+SF+  +S+E+R+P+  ++G  + L 
Sbjct: 342 AAGEFAGYRGVGRDVTER---WRAEQAEAENRAKSSFLAMMSHEIRTPMNGVLGLANSLL 398

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +K   L+ +Q Q V  I  S   LL ++NDILDL+ ++AG ++   +      L+  V+
Sbjct: 399 ETK---LDPEQQQAVTTIRDSGDDLLRILNDILDLSKLEAGRLEFEQADFSPTTLVESVR 455

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
             I  ++    I +KV  D +L      D  R+ Q+   + +NA+ F+ +GS  ++L   
Sbjct: 456 AIIEPEVRGKGIELKVDIDPRLPPSLNGDAARIRQVLLNLAANAVKFTEQGSIAIVLTCV 515

Query: 714 RDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           + N       + V + G  I  D   S+F  F        RR  G GLGL+I    +   
Sbjct: 516 KRNDSHATVEWQVTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQM 575

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG ++++S +   +T    +
Sbjct: 576 GGDIAVTSREGEGSTFRFSL 595


>gi|119490633|ref|ZP_01623038.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
 gi|119453798|gb|EAW34955.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
          Length = 1016

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 13/289 (4%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R+S +   + +    L +  I L  A  +   + +T    ++ AL +  +    A++ K+
Sbjct: 476 RRSFEVWKQTIQGCSLPWKKIELDAALELRNILMLTALQSSQLALEQVAQRAEIANQAKS 535

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  I+GF DLL+         +Q  Y+E I+AS   LL+L+NDILDL
Sbjct: 536 EFLANMSHEIRTPMNAILGFCDLLQGLV---TEPRQRSYLELIAASGESLLDLINDILDL 592

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689
           + ++AG  +L Y  + L  L+ EV++    +  E  + +    D  +      D  RL Q
Sbjct: 593 SKIEAGKFQLYYEPLNLRQLIAEVQKIFTHRAKEKGLSLISHIDDAVPQGIYFDGIRLRQ 652

Query: 690 IFSKILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRF 742
           I   +L NA+ F+ +G   + ++A     +         ++ + G  I ++    +F  F
Sbjct: 653 ILFNVLGNAIKFTERGFIQISIRAQVYTQENIKKVWLEIAITDTGIGIAKNQQDDIFEAF 712

Query: 743 VSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V +      +  G GLGL+I      L GG + + S     ++     P
Sbjct: 713 VQSEGQSTRKYGGTGLGLAITRRLTTLLGGTLVLQSELSHGSSFIFIFP 761


>gi|118587243|ref|ZP_01544671.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163]
 gi|118432385|gb|EAV39123.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163]
          Length = 630

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 159/399 (39%), Gaps = 36/399 (9%)

Query: 404 VTSNPRGGTIWM-FENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + S    G +     +L+  +  ET   N         + ++++GV     DG I + N 
Sbjct: 245 IKSKDEIGILATQINDLSDTIASETATSNMESDRLNSLLSNMTDGVLAITRDGTITVINQ 304

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A   L        + G +I ++     +       +      +   D    ++  +L   
Sbjct: 305 AALDLLHIPRTDKAVGKNISDLLKLVDKKITLRKLFQSIRGFVVEPDGVTLNVVASLVRR 364

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               +  +++                       L +    L+  D+ KN FV +VS+ELR
Sbjct: 365 QSGFISGAVV----------------------VLRDVTRQLKLEDDQKN-FVSNVSHELR 401

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT++  + + L+   L        +++      +  +++++ND+L+L+ +D G  K++
Sbjct: 402 TPLTSVNSYIETLQEGALTQ-RKIAREFLGVAHDETQRMIHMINDLLELSRMDQGRTKMD 460

Query: 642 YSTIVLNDLLNEVKQSIATKMHE-------NNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
              +     +N V         +       N+ +I    D K   +V  D  + +Q+   
Sbjct: 461 TEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDSDKFMQVVDN 520

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           +++NA+++S  G  + +     +   I S+K++G  IP+   ++VF RF        R  
Sbjct: 521 VINNAINYSPDGGNIEIGINETDDSIILSIKDHGLGIPKKDLENVFTRFYRVDKSRARKQ 580

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGL+I +  +    G + + S+    TT    +P 
Sbjct: 581 GGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 619



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 32/168 (19%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S+  T N +      +L N+T  +    ++  +   N++ ++L  I     A   +  +
Sbjct: 266 ASETATSNMESDRLNSLLSNMTDGVLAITRDGTITVINQAALDLLHIPRTDKAVGKNISD 325

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPR 409
           LL+           ++ K     +F   +           P+G TL+V+       S   
Sbjct: 326 LLKL----------VDKKITLRKLFQSIRGFVVE------PDGVTLNVVASLVRRQSGFI 369

Query: 410 GGTIWMFENLTVQVDLE-----------TKYNTLVKVQGETIDHLSEG 446
            G + +  ++T Q+ LE            +  T +      I+ L EG
Sbjct: 370 SGAVVVLRDVTRQLKLEDDQKNFVSNVSHELRTPLTSVNSYIETLQEG 417


>gi|289627276|ref|ZP_06460230.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289650434|ref|ZP_06481777.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869471|gb|EGH04180.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 778

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 8/370 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIR 481
           + E       +     I+ + + G+     +G +   N     +    E   +     + 
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVF 318

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   C ++ + +          T  +  R+   G+    S  +                
Sbjct: 319 YLPEECPQHPDMALREATVNGRYTE-ESWRRRKDGSRFWASVVITAQYDGNDELRGFSKI 377

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S
Sbjct: 378 TRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS 437

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++  
Sbjct: 438 ----QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPM 493

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + NI +K +         VADRQRL+Q+   +LSNA+ ++     V ++  + +    
Sbjct: 494 AADANIELKALPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVT 553

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++   
Sbjct: 554 VSVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAE 613

Query: 781 VTTINCRIPS 790
                  +P 
Sbjct: 614 GCRFILELPL 623


>gi|126660462|ref|ZP_01731571.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126618275|gb|EAZ89035.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 842

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 5/246 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              + +    L     +  KA++ K+ F+  +S+ELR+PL  I+G+  L+  S   +L+ 
Sbjct: 361 FKQTQKQAEELAMAKMSAEKANQAKSEFLASMSHELRTPLNAILGYVQLMLRS--TALSF 418

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
                ++ I+ S   LL L+ND+L ++ ++AG M L  +   L  LL E+   +  K   
Sbjct: 419 DHRNNLQIINDSGEHLLGLINDVLQMSKIEAGQMVLTETDFDLYHLLYELDTLLQLKASS 478

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +++  I D  +  ++  D ++L Q+   I+ NA+ F+ KG  + +K         F+V
Sbjct: 479 KQLQLSFIRDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEKGG-ITVKVWCKGHQLFFAV 537

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I  +  + +F+ F           G GLGL I   FINL GG ++++S     T
Sbjct: 538 QDTGQGIENEELEVLFSPFTQATAGIDSGEGTGLGLPISAKFINLMGGDITVNSRVGEGT 597

Query: 783 TINCRI 788
           T    I
Sbjct: 598 TFTFDI 603


>gi|260173568|ref|ZP_05759980.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921835|ref|ZP_07918075.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695710|gb|EFS32545.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 1007

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 138/770 (17%), Positives = 279/770 (36%), Gaps = 79/770 (10%)

Query: 63  SEICDQLSKYHSLLTENNCLTIVWDGKDETPEII---GQLHQRIDIPQTDTDLLSFENWL 119
           SE   + S+  + L       + W+  D  P++     +     D  +  +  L  E  L
Sbjct: 128 SEEVLRQSRRKTELAMKAANIMFWE-FDAVPKLFYSDNEPLNGYDQSKPVSMALYLET-L 185

Query: 120 KFHHYIKLSKATEKLRKEGQ----SFDLVAETQNDCAIK---IEGRVSGSCAFLRILSLD 172
                 ++++  E++   G+    SFD      +    +   I G      +  ++L   
Sbjct: 186 HPDDRSQVTEVMERM-SNGEDFSFSFDSRVMLPDSSTWQFCTISGAPYEFDSNKKVLKYV 244

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWAN----------- 219
           G      E   K +        F  + ++L   V  +D       ++ N           
Sbjct: 245 GTRKNNTEVQKKEQ-------FFYNILNNLPLSVHIKDVENDFRYVFCNEESKLMFGTSE 297

Query: 220 --ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
              +Y   +E E    QK   E             I              ++   + K +
Sbjct: 298 DKTTYDVLSEEEVERIQKTDLEVYNTGNPYFGMERIILKDGRSYDTIVRKSIIEDDGKRF 357

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI---FDQNRYLQFHNRS 334
            +    +   +  +           + +             ++    FD+N         
Sbjct: 358 LLNTRWDQSLQNELKRRAQLLTVTMEAMNAFTWFFEPAKNRVSFGEGFDKNGK------K 411

Query: 335 FVELWEIDLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             E+  ++      +P + +   E L+ A +L   +    W       +K    ++  W 
Sbjct: 412 ASEINSVEKYLTLVHPDDRQKFAETLQKAVELGSGV----WDVEYRIDFKGDGMYQ--WW 465

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEG 446
              G      +   P      M +N+      E          + LV+     +++ + G
Sbjct: 466 ETRGLVETTTLNDAPYKYLFGMTQNIDSYKQTELTLLKNKEIQDALVRQNELVLNNTNSG 525

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +A    +  ++  N +  S   + E     G          +           F ++ T 
Sbjct: 526 LAYITKEYMVQWENISLCSKSLSFEAY-KKGELCYKSTYNRTSPCENCVMQRAFVSLQTE 584

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPL-----PNAQTMLTFVNVTDSVRAERALTEKNEA 561
                   Q    L S   +E    P+          ++   +VT+  +  + L E    
Sbjct: 585 --------QMKFSLDSAHTVEVFATPVVLEDGSVDGVVIRVDDVTEREKMIKELQEAKHQ 636

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             ++D++K++F+ ++S+E+R+PL  I+GF++L+  +       +++ Y++ I++++ +LL
Sbjct: 637 AEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG----EEEKADYIQIINSNNELLL 692

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILDL+ ++AG ++L Y    L++    +  S+  ++   +I +  I+        
Sbjct: 693 KLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVLTEINPYHCCQVT 752

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R+ QI +  ++NA+ ++SKGS + +  A  +G   F VK+ G  I +D    VF R
Sbjct: 753 LDRNRVAQIITNYVTNAIKYTSKGS-IKMGYACKDGGVYFYVKDTGIGIADDKKGKVFQR 811

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F       Q  G GLGLSI ++     GG V   S     +     +P +
Sbjct: 812 FEKLDEFAQ--GTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWAFLPCE 859


>gi|160886321|ref|ZP_02067324.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
 gi|156108206|gb|EDO09951.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
          Length = 1007

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 138/770 (17%), Positives = 279/770 (36%), Gaps = 79/770 (10%)

Query: 63  SEICDQLSKYHSLLTENNCLTIVWDGKDETPEII---GQLHQRIDIPQTDTDLLSFENWL 119
           SE   + S+  + L       + W+  D  P++     +     D  +  +  L  E  L
Sbjct: 128 SEEVLRQSRRKTELAMKAANIMFWE-FDAVPKLFYSDNEPLNGYDQSKPVSMALYLET-L 185

Query: 120 KFHHYIKLSKATEKLRKEGQ----SFDLVAETQNDCAIK---IEGRVSGSCAFLRILSLD 172
                 ++++  E++   G+    SFD      +    +   I G      +  ++L   
Sbjct: 186 HPDDRSQVTEVMERM-SNGEDFSFSFDSRVMLPDSSTWQFCTISGAPYEFDSNKKVLKYV 244

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDILWAN----------- 219
           G      E   K +        F  + ++L   V  +D       ++ N           
Sbjct: 245 GTRKNNTEVQKKEQ-------FFYNILNNLPLSVHIKDVENDFRYVFCNEESKLMFGTSE 297

Query: 220 --ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
              +Y   +E E    QK   E             I              ++   + K +
Sbjct: 298 DKTTYDVLSEEEVERIQKTDLEVYNTGNPYFGMERIILKDGRSYDTIVRKSIIEDDGKRF 357

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI---FDQNRYLQFHNRS 334
            +    +   +  +           + +             ++    FD+N         
Sbjct: 358 LLNTRWDQSLQNELKRRAQLLTVTMEAMNAFTWFFEPAKNRVSFGEGFDKNGK------K 411

Query: 335 FVELWEIDLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             E+  ++      +P + +   E L+ A +L   +    W       +K    ++  W 
Sbjct: 412 ASEINSVEKYLTLVHPDDRQKFAETLQKAVELGSGV----WDVEYRIDFKGDGMYQ--WW 465

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEG 446
              G      +   P      M +N+      E          + LV+     +++ + G
Sbjct: 466 ETRGLVETTTLNDAPYKYLFGMTQNIDSYKQTELTLLKNKEIQDALVRQNELVLNNTNSG 525

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +A    +  ++  N +  S   + E     G          +           F ++ T 
Sbjct: 526 LAYITKEYMVQWENISLCSKSLSFEAY-KKGELCYKSTYNRTSPCENCVMQRAFVSLQTE 584

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPL-----PNAQTMLTFVNVTDSVRAERALTEKNEA 561
                   Q    L S   +E    P+          ++   +VT+  +  + L E    
Sbjct: 585 --------QMKFSLDSAHTVEVFATPVVLEDGSVDGVVIRVDDVTEREKMIKELQEAKHQ 636

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             ++D++K++F+ ++S+E+R+PL  I+GF++L+  +       +++ Y++ I++++ +LL
Sbjct: 637 AEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG----EEEKADYIQIINSNNELLL 692

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILDL+ ++AG ++L Y    L++    +  S+  ++   +I +  I+        
Sbjct: 693 KLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVLTEINPYHCCQVT 752

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R+ QI +  ++NA+ ++SKGS + +  A  +G   F VK+ G  I +D    VF R
Sbjct: 753 LDRNRVAQIITNYVTNAIKYTSKGS-IKMGYACKDGGVYFYVKDTGIGIADDKKGKVFQR 811

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F       Q  G GLGLSI ++     GG V   S     +     +P +
Sbjct: 812 FEKLDEFAQ--GTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWAFLPCE 859


>gi|239627311|ref|ZP_04670342.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517457|gb|EEQ57323.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 810

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/498 (20%), Positives = 198/498 (39%), Gaps = 46/498 (9%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + D++  L + N  + +L               E  E   +   L  Q + + W +   +
Sbjct: 39  LLDEHFTLVWANEFYYDLIGWP---------RGEYEEMFHNQPDLYYQDDQELWADLTQT 89

Query: 381 VYKSSETHKDTWHL------PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           V K+ E+ +  + +       NG+ + V  ++      I  ++   V   + T  + LV+
Sbjct: 90  VIKALESRQGGYQMVSRLRRKNGEYIWVQFSTRFSDEYIDGYQ---VAYSVLTNIDDLVQ 146

Query: 435 VQGE---TIDHLSEGVAVFGPD---GRIKL-SNPAFRSLWKTE---ENRLSPGTHIRNIA 484
           +Q E   T ++L   VA +  D   G + L +N  F   +      E     G +IR+  
Sbjct: 147 MQRERSVTYENLPGFVAKYRIDQDLGMVLLDANARFMEYFGDNTNGELHALQGQNIRDNM 206

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE----YSIIPLPNAQTML 540
            T   + NE    +    ++   D + ++L   +        E    Y  I +       
Sbjct: 207 ETIQSHRNELLKGEPVRFVMHVKDRKGQNLWLQVNAACIDWQEKSPVYLAIFIDITDVTE 266

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                        AL +       A+  K+ F+  +S+E+R+P+  IIG T +       
Sbjct: 267 LREMQKKLTEQTAALKDALTVAEHANRAKSDFLSRMSHEIRTPMNAIIGMTTI----AAA 322

Query: 601 SLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            ++ KQ     +E I  SS  L+ L+ND+LD++ +  G M++ +    L  ++  +   I
Sbjct: 323 YIDDKQRVADCLEKIGYSSKHLMTLINDVLDMSKISEGKMRIAHEPFKLETVVESISSII 382

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---R 714
             +  E  +   V + +      + D  RL Q+   +LSNA+ F+ KG ++ ++     +
Sbjct: 383 YPQAREKGLDFTVPLVELTETELIGDSLRLNQVLLNLLSNALKFTPKGGSIRMEIRQMLK 442

Query: 715 DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGG 770
            +G     F+V + G  +     + +F  F            G GLG+ I ++ + L GG
Sbjct: 443 KDGKIRLRFTVSDTGIGMSSAFMERLFVPFEQEDMSAGQNAGGTGLGMPITKNLVTLMGG 502

Query: 771 HVSISSSDEGVTTINCRI 788
            +++ S     T+    +
Sbjct: 503 TITLQSELGKGTSFIVEL 520


>gi|119490652|ref|ZP_01623057.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119453817|gb|EAW34974.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1064

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 176/427 (41%), Gaps = 54/427 (12%)

Query: 405 TSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
            S+  G     F  +  Q+     +         + ++ L  GV+V    G++  +N   
Sbjct: 415 RSDELGELAHSFNQMAHQLQASFAELKDSESRLFQYLEALPVGVSVHDITGKLYYANQTS 474

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R L   +    +    +            +    +   A+        ++L+G +  + D
Sbjct: 475 RQLLNIQTLLDAQAKELSQAYQIYQAGTGKLYPTNALPAV--------RALKGEIVYIDD 526

Query: 524 S---------VLEYSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKA---- 565
                      +E    P+ N Q  + +      ++T   +AE+ L + N  L       
Sbjct: 527 LEIHYPNKILPIEVWATPIYNEQGQIIYAIAAFQDITQRKQAEQLLADYNCTLEAQVTQR 586

Query: 566 --------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                         +  K++F+ ++S+ELR+PL  I+GF+ ++  S   +L ++  + V+
Sbjct: 587 TQELAEAKEKAEVANVAKSAFIANMSHELRTPLNAILGFSQIMNRS--SNLPNEHQESVK 644

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ S   LL L+N+ILD++ ++AG + LN     L  LL+E+++    K     +++  
Sbjct: 645 IINRSGEYLLTLINNILDVSKIEAGKITLNSKNFYLVRLLDEIEELFKLKSINQGLQLYF 704

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--------GDFIFS 722
             +  +  ++  D  +L ++   +LSNAM F+  G  + L+    +            F 
Sbjct: 705 EREDNIPQYIQTDELKLREVLINLLSNAMKFTQVGG-IYLRVKTRSTPETEPSTQTLYFE 763

Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V++ G  I  +    +F  F    + +  + G GLGL+I + F+ L GG +++ S     
Sbjct: 764 VEDTGVGILSEELSQLFEAFSQTQSGKQAQEGTGLGLAISQKFVELMGGEINVKSQAGVG 823

Query: 782 TTINCRI 788
           T  +  I
Sbjct: 824 TIFSFNI 830


>gi|71908460|ref|YP_286047.1| PAS [Dechloromonas aromatica RCB]
 gi|71848081|gb|AAZ47577.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 764

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 165/384 (42%), Gaps = 19/384 (4%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK-LSNPAFRSLWKTEENR 473
           + E +  ++         V+     +   + GV V G D  I+ + + +        +  
Sbjct: 233 LAEEIRARLHNLLTRKRAVERSQMLLAATALGVVVVGQDAVIESMDDNSLDMFRPATQPV 292

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L     I            +     +    I+      +   G      D  +E +II +
Sbjct: 293 LGQPLSILLPEEKNPGLLGQMMQRVMAEERISGLKAVGQRGDGE-----DFPVELTIIEI 347

Query: 534 PNAQTMLTFVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +   +  F  +   +  E+AL    T  +EA  +A+++K +F+ ++S+E+R+PL  IIG
Sbjct: 348 NSGDGVRHFALLARDISEEQALATYLTRASEAAERAEQMKTAFLANMSHEIRTPLNAIIG 407

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              +L  ++   L++ Q +YV +I A+   LL L+ ++LD++ ++AG ++L    + + +
Sbjct: 408 MAHILSRTE---LDTAQKKYVGHIDAAGEHLLGLITNVLDMSKIEAGRLELENIPLAVEN 464

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--- 706
           ++ EV   +A +  E  + +++         V D  RL Q     +SNA+ F++ GS   
Sbjct: 465 IVFEVLSMVADQAAEKGLDVRIGELDAPSGLVGDPVRLRQALLNYVSNAIKFTADGSIDV 524

Query: 707 -TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             +    + D+    F V + G  I  +    +F+ F    +   RR  G GLGL+I   
Sbjct: 525 RVITQAVSEDSVLLRFEVADTGIGISAEARDEIFSAFRQADNSTTRRYGGTGLGLAITRQ 584

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
              L GG V +SS+    +     
Sbjct: 585 LAELMGGEVGVSSTPGQGSLFWFT 608


>gi|67920227|ref|ZP_00513747.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67857711|gb|EAM52950.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 758

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 141/294 (47%), Gaps = 13/294 (4%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRK 564
           +R+ L+     L   + E+  + +  AQ         ++         +AL +   A + 
Sbjct: 323 KRQWLESEKAFL-GQIGEHLAVAIYQAQLYAQVQEQKNTFEQRVIESTQALRDTLIASQA 381

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTILL 621
           A+  K+ F+ ++S+ELR+PLT IIG +  L       LN    KQ +Y++ I  S   LL
Sbjct: 382 ANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQEGLNLPVDKQRKYLDTIQNSGKHLL 441

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGS 679
           +++N+IL+ + + +G   L+     L  +   V Q ++ +      N+ + +  + +  S
Sbjct: 442 DMINEILEYSNLQSGKYVLSVRYFSLTKVAKNVMQRVSDESEHRRINLELDLQIEPQKDS 501

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F AD +R+ QI   +L+NA+ F+SK   V L+   +       V++ G  I E+    +F
Sbjct: 502 FSADPERVQQILYHLLNNALKFTSKNGKVTLRVWLEKNQLCLEVEDTGIGIEEEKIPLLF 561

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             F    +  +R   G GLGL++ +  + LHGG + + S     +T   RIPS+
Sbjct: 562 ESFQQLENSRRRVYGGTGLGLALTKQLVELHGGTIEVESIINKGSTFTVRIPSQ 615


>gi|17547798|ref|NP_521200.1| composite two component sensor histidine kinase and response
           regulator hybrid transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17430103|emb|CAD16788.1| probable composite two component regulatory (sensor histidine
           kinase and response regulator hybrid) transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 994

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/614 (18%), Positives = 204/614 (33%), Gaps = 48/614 (7%)

Query: 201 SLDFLV--WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
           +L      W R +   +L A         T           +       +     +  A 
Sbjct: 8   ALPAPAHLWRRGRTALLLCATA--IALLTTSDRAQADRTTRALPPMGHPLMPSAAAQMAS 65

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
                            +  ++ + +             E  +  QL   + +L +L   
Sbjct: 66  GTPAAAIALW-------TLAVLSMRHVQLRRENRRRRRAEADLARQLDFHHRLLESLPFP 118

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           +A  D        N +F  L+      L              +A +  + ++ +      
Sbjct: 119 LAAQDTQHRYVAVNAAFCHLFGQPREALLGRTPAHLGWRCAHTAAR-AQDIDRRA----- 172

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNT 431
            +          T    +G+  HV+    P        GGT+    ++    D +     
Sbjct: 173 -TAASQGACEALTITAADGRERHVLYWVAPVHGPDGRPGGTVASLIDIDGIRDAQAPAEQ 231

Query: 432 LVKVQGETIDHLSEGVAVF------GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             +   E  + L   V  F         GR++               +            
Sbjct: 232 RAQRLHELTESLPALVCQFEMRPGTAARGRMRHLAGNASETLGAPAGKARGRLPSPARLV 291

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                          AA +T  D + +   G   +     L     P   A     +   
Sbjct: 292 HRDDRQRMRGAALQSAAQLTLLDQQFRHGNGDGPV---RWLHIRARPRRGADGCTVWNGY 348

Query: 546 TDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              V AERA    L    +A   A   K+ F+  +S+E+R+P+  ++G     +      
Sbjct: 349 LRDVTAERAQADALVSARQAAESALRAKDRFLATMSHEIRTPMNGVLGLV---ELLLQTR 405

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +Q + +  +  SS  LL++++DILD A ++A  + +  +   L  LL+     +A++
Sbjct: 406 LEREQQRMMTLVQESSRALLHVLDDILDYAKIEADRLSITPAPTDLRALLDSTVGLLASR 465

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
            HE ++ ++V  D  +  +   D  RL Q+   +LSNA+ F+  GS  +    ++ A D 
Sbjct: 466 AHERSLAVRVDVDAAVPATVSVDGMRLRQVLCNLLSNAIKFTEHGSVRLSAKCMETAADT 525

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              I  V + G  I  +   ++F  FV        R  G GLGL+I      L GG + +
Sbjct: 526 VHLIIRVTDTGIGIAPEAQATLFTPFVQADSTITHRQCGTGLGLAISRQLARLMGGSLDM 585

Query: 775 SSSDEGVTTINCRI 788
            S+    TT+  R+
Sbjct: 586 DSTPNVGTTLTLRL 599



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/480 (12%), Positives = 129/480 (26%), Gaps = 35/480 (7%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           L      +  + T  L   G      A  Q             + A L +  +       
Sbjct: 33  LTTSDRAQADRTTRALPPMGHPLMPSAAAQMASGTPAAAIALWTLAVLSMRHVQLRRE-N 91

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQKA 236
                    L+  +     L +SL F +  +D     +  N ++        E ++ +  
Sbjct: 92  RRRRRAEADLARQLDFHHRLLESLPFPLAAQDTQHRYVAVNAAFCHLFGQPREALLGRTP 151

Query: 237 IGESRKLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNKS-YKIVRVLNSFGEAG- 290
                +      +     R  ++++       T++  +       Y +  V    G  G 
Sbjct: 152 AHLGWRCAHTAARAQDIDRRATAASQGACEALTITAADGRERHVLYWVAPVHGPDGRPGG 211

Query: 291 -----IAID--VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                I ID     +     +    +E+  +L   +  F          R  +     + 
Sbjct: 212 TVASLIDIDGIRDAQAPAEQRAQRLHELTESLPALVCQF--EMRPGTAARGRMRHLAGNA 269

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG----QT 399
           +     P+       L S  +L  + + +  +                +   NG    + 
Sbjct: 270 SETLGAPAGKA-RGRLPSPARLVHRDDRQRMRGAALQSAAQLTLLDQQFRHGNGDGPVRW 328

Query: 400 LHVIVTSN--PRGGTIW--MFENLTVQ-------VDLETKYNTLVKVQGETIDHLSEGVA 448
           LH+         G T+W     ++T +       V       + ++ +   +  +S  + 
Sbjct: 329 LHIRARPRRGADGCTVWNGYLRDVTAERAQADALVSARQAAESALRAKDRFLATMSHEIR 388

Query: 449 V-FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                   +       R   + +          R +        + +       +I  + 
Sbjct: 389 TPMNGVLGLVELLLQTRLEREQQRMMTLVQESSRALLHVLDDILDYAKIEADRLSITPAP 448

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            D R  L  T+ LL+    E S+    +    +      D +R  + L        K  E
Sbjct: 449 TDLRALLDSTVGLLASRAHERSLAVRVDVDAAVPATVSVDGMRLRQVLCNLLSNAIKFTE 508


>gi|332526001|ref|ZP_08402141.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332109846|gb|EGJ10474.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 972

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/503 (19%), Positives = 190/503 (37%), Gaps = 53/503 (10%)

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF---LRSANKLPEQLNWKTWK 375
           +A +D+   L+F N+++++ + ++   +    +  E+L     +R    L   L  +  +
Sbjct: 208 VAYWDRALRLRFANQAYLDWYGLERDAVLGR-TMGEVLGAEVPVRRREALERVLAGEVVQ 266

Query: 376 ENI-FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
             +     +    H   + LP+ +   +        G  ++  N++   D          
Sbjct: 267 TRLDIEGSRGRRGHFWVYRLPDKRRGRIA-------GFYFIASNVSELQDARLAAEAANL 319

Query: 435 VQ-------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                     E  D L   V  +  + R + +N A +  +   E  L        +  + 
Sbjct: 320 ALARAEAFTRELADTLPAVVLYWDHEERCRFANLAAQDWFARGEAEL--------LGRSI 371

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY------SIIPLPNAQTMLT 541
           +              I  +   ER+  + TL       +         +I       +  
Sbjct: 372 AELIPAEQYEGARPFIEGALRGERQEYERTLVRADGRAVPLYAHYVPRVIDGQVVGFLAV 431

Query: 542 FVNVTDSVRAERALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +V    +AE+ L E N  L +           K++F+ ++S+E+R+P+  IIG T L+
Sbjct: 432 LTDVGALKQAEQRLAEANGQLEQRAVQAEAATRAKSAFLANMSHEIRTPMNAIIGLTHLI 491

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L   Q + +  +  ++  LL ++NDILDL+ ++AG ++L+      ++L+   
Sbjct: 492 SRATQDPL---QRERLRKVDGAAAHLLQILNDILDLSKIEAGKLRLDPVDFSRDELIARA 548

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA- 713
              +        + + + +D        D + L Q    +L NA+ F+  G  V L+AA 
Sbjct: 549 LDVVEASARAKGLELVLDTDHLPARLRGDARLLSQALINLLGNAVKFTEHG-WVRLRAAL 607

Query: 714 -RDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            R++G      F V++ G  I  +    +F  F        RR  G GLGL++      L
Sbjct: 608 LREHGQRLQVRFEVQDTGIGIAPEQQARLFTAFEQADSSSTRRHGGTGLGLALTRHIAEL 667

Query: 768 HGGHVSISSSDEGVTTI--NCRI 788
            GG     S     +T      +
Sbjct: 668 MGGSADAVSRPGAGSTFGLTVWL 690


>gi|304310584|ref|YP_003810182.1| Sensor kinase GacS [gamma proteobacterium HdN1]
 gi|301796317|emb|CBL44525.1| Sensor kinase GacS [gamma proteobacterium HdN1]
          Length = 994

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 147/324 (45%), Gaps = 12/324 (3%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L    +I ++              D+   ++ + D   + L   LELL +++L+      
Sbjct: 215 LRFSRYIHDVIEYAREAIARMVNGDIETEVLVTRDINTRDLFNNLELLRNTILQGQKELQ 274

Query: 534 PNA-QTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +A QT        +++  +   L    +   +A  IK+ F+ ++S+E+R+PL  +IGFT
Sbjct: 275 HHADQTTEDLRETLETIEIQNIELDLARKEAVEASRIKSEFLANISHEIRTPLNAVIGFT 334

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  S + +    Q  Y+E I  SS  LL ++ND+LD + ++AG + L  +     +L+
Sbjct: 335 TLLLKSDIKTF---QYDYLETILKSSEGLLAIINDVLDFSKIEAGKLSLESTPFNFQNLV 391

Query: 652 NEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            +V   +A   +E ++  I +         + D  RL QI + +++NA+ F+S+G  V+ 
Sbjct: 392 EDVLTMLAPMAYEKHLEQISLYYSDVPQQIIGDPLRLKQILTNLVNNAIKFTSQGEVVVR 451

Query: 711 KAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
               D+ +       SV + G  + ++   ++F+ F    +   RR  G GLGL I +  
Sbjct: 452 VMLEDSRNHLCVIKVSVTDTGIGLTKEQQSALFHAFQQADNSAARRHSGTGLGLVISKHL 511

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           +    G + I S      T     
Sbjct: 512 VEQMRGQIGIESEIGAGATFWFTF 535


>gi|297625139|ref|YP_003706573.1| histidine kinase [Truepera radiovictrix DSM 17093]
 gi|297166319|gb|ADI16030.1| histidine kinase [Truepera radiovictrix DSM 17093]
          Length = 379

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 160/369 (43%), Gaps = 26/369 (7%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                ++   + +A     GR+  +N A  +L     + L           +  R    +
Sbjct: 6   ALAAALEVSFDALAAL-EGGRVVAANGALGALVGCAPHEL-----WGRALGSLVRVEPPA 59

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA------------QTMLTF 542
           +G      ++ +     + L+GTL L     L   ++  P                 L  
Sbjct: 60  EG-----GVLEALRRAPQPLEGTLTLWGGKELPVELLWRPWRFQGRPVELVAVRGVSLAT 114

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
              +   R +  L  KN  L +A+ ++  F+  +S+ELR+PLT++IG+  +L    +G L
Sbjct: 115 SAQSALRRYQATLERKNSDLERANRVQREFLGILSHELRTPLTSVIGYAQVLGDEIIGPL 174

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N KQ  Y E I  S   L+ L++D+LDL+ ++AG + L    + + +LL      +  + 
Sbjct: 175 NDKQRAYAETIYTSGLQLMRLIDDLLDLSRLEAGDVALQRRPVAVAELLRAGVAGVGAEA 234

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               + + +    +  +   D  RL Q+   +LSNA+ F+  G  V + A     + +  
Sbjct: 235 RAKGLSVTLQPPPE-AALYGDPARLAQVLGALLSNAVKFTPLGGRVWVSAELRESEVVLM 293

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  I  +  + VF+ F  V  +   Q RG GLGL++    + LHGG + ++S    
Sbjct: 294 VRDDGIGIAPEHHEGVFSPFFLVDASSARQHRGAGLGLALARRIVELHGGRIWVASELGR 353

Query: 781 VTTINCRIP 789
            +T    +P
Sbjct: 354 GSTFYVALP 362


>gi|83717440|ref|YP_439204.1| sensory box histidine kinase [Burkholderia thailandensis E264]
 gi|83651265|gb|ABC35329.1| sensory box histidine kinase [Burkholderia thailandensis E264]
          Length = 812

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/507 (17%), Positives = 196/507 (38%), Gaps = 33/507 (6%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S ++    +L H    L ++   +   D +  + F NR   E+  +    +   P    
Sbjct: 317 ASDDLFAQRELLHV--TLASIGDGVIATDVDGRITFFNRVAEEMTALAADAVVGQPIEQV 374

Query: 355 L-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----- 408
           L      +   +         ++ I ++          +    G  L V   + P     
Sbjct: 375 LTFRHALTQRVIDNPARVAVERKRIAAL-----PVHTRFVGRGGGELPVDGNAAPTFDAN 429

Query: 409 --RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G + +  +++ +           +     ++     + +   +G+I L N      
Sbjct: 430 GKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPNAMIMVNREGKIVLVNSQAEKF 482

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +      +  G  I  +     R  + +     F           + L G     S+  +
Sbjct: 483 FDYVRGDM-IGQGIDMLVPERFRAGHATHRGAFFGKPDARPMGAGRDLFGLRRDGSEFPV 541

Query: 527 EYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ P
Sbjct: 542 EIGLNPITTSEGAFVLCSITDITARKRAEHELRRRSEELARSNQDLEQFAYVASHDLQEP 601

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++    
Sbjct: 602 LRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDARQ 659

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            +    +L+E  ++++  + E+  +I      +L        +L+ +F  ++ NA+ F S
Sbjct: 660 PVDCERVLDEALRNLSAAIRESGAQIT---HDRLPIVHGIAAQLVLLFQNLIGNAIKFRS 716

Query: 704 KGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           K     + L+A   +  ++F V++NG  I     + +F  F     R +  G GLGL++ 
Sbjct: 717 KERIARIHLEADTRDDAWVFRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLALC 776

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  +  HGG +++ S     TT +  +
Sbjct: 777 KRIVEHHGGRIAVESEPGRGTTFSFAL 803


>gi|119773209|ref|YP_925949.1| signal transduction histidine kinase-like protein protein
           [Shewanella amazonensis SB2B]
 gi|119765709|gb|ABL98279.1| Hpt sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1021

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 157/386 (40%), Gaps = 20/386 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  ++    +     +     I+ +   +A        +  N  +       E  +  G 
Sbjct: 239 IRQRIMQAKELEDSRRYIDTVINVIPVQLAYVDASRCYRFINRRYLVWLGKSEAEVL-GR 297

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTL--ELLSDSVLEYSIIPLP 534
            + ++                       FD E   K  Q T   ++ +D  +      + 
Sbjct: 298 SVTDVLPPPVEELIVPYQLRALQGNQQVFDAEFDDKYFQATYVPDVTNDGEVVGFFACVE 357

Query: 535 NAQTMLTFVNVTDSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +   +       +S   E       L E  E    A  IK  F+  +S+E+R+P+  ++G
Sbjct: 358 DLTPIKANERKIESYALELEHKNADLVEAREKAEAASRIKADFLACMSHEIRTPMNGVLG 417

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL+ ++   L+ +Q  Y++  S S+  LL L+NDILD + +++G  +++     L  
Sbjct: 418 ILSLLEKTE---LSIQQKHYLDVASTSAESLLTLLNDILDFSKIESGKFEIDEVPFDLIQ 474

Query: 650 LLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGST- 707
           LL++  Q  A +     +++ +   G  L     D  R+ Q+   ++SNA+ F+  G   
Sbjct: 475 LLDDFIQPFAIRAEAKGLKLLLDISGIHLRWVRGDPGRIRQVLVNLVSNAIKFTEVGWIA 534

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
           V ++A+ D  +    + S+++ G  I +D  + +F+ F        R   G GLGLSI +
Sbjct: 535 VRVQASEDTANGVSLMVSIEDTGIGISKDKQEVLFSPFTQADSTTTRHFGGTGLGLSIAK 594

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
               L  G + + S+++  +T    +
Sbjct: 595 RLCELMDGDIRVISAEDAGSTFKFHL 620


>gi|212693148|ref|ZP_03301276.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
 gi|212664253|gb|EEB24825.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
          Length = 494

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/498 (18%), Positives = 205/498 (41%), Gaps = 23/498 (4%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +  QL  + +IL+ L  A+   D N  ++  N   +   E+    +    +  +++  LR
Sbjct: 7   IKGQLVLSKQILNILPSALIFMDANGTIERINDEAIHELELGDRDIKGE-NISQIISILR 65

Query: 361 S-ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRGGTIWMFE 417
           +  N +PE +     +E I    K++    +  ++     + +  + T       I  F 
Sbjct: 66  NHQNIIPELIEALKHEEKIIDFPKATFIKSELQNIRFIAERRIASVFTKKKLSQMILSFR 125

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           N+  ++  +   N  + +              +  + +  + +  +              
Sbjct: 126 NIEGELTQQHIINMALSLTKIYP-------WFYDMEKKKLIIDARWFKYLNIPTK--DYT 176

Query: 478 THIRNIAATCSRYYNESDGWDLFAAII-----TSFDDERKSLQGTLELLSDSVLEYSIIP 532
                 AA       ++    L   I       +F    K   G+ E   +  L    I 
Sbjct: 177 LTEEEFAAYLHPDDRDTLMNALTNQIAGNLNTEAFTYRLKQSDGSWEWFEEQSLYLEQIE 236

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + +    ++ +   AE  L    +   ++D++K++F+ ++S+E+R+PL  IIGF++
Sbjct: 237 GAPYRIIGACQSIQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFSN 296

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL + ++     +  ++V  I+ +   LL L++DI+D++ +++  ++       L+ +L+
Sbjct: 297 LLVSEEMDG--EESKEFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQILS 354

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E+ Q  +  +    I  ++    +    + D  R  Q+ + +++NA+ F+  G   +   
Sbjct: 355 EIYQCQSLNIPSK-IEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMYGHITLGSK 413

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              NG     VK+ G  +P++    +F RF        + G GLGLSI ++ I    G +
Sbjct: 414 ILQNGTIDIYVKDTGMGMPQEKLAHIFERFYKMDSF--KPGAGLGLSICKTIIEHMQGEI 471

Query: 773 SISSSDEGVTTINCRIPS 790
           +++S +   +     IP+
Sbjct: 472 NVTSIEGKGSNFTITIPT 489


>gi|126657352|ref|ZP_01728511.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126621339|gb|EAZ92051.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 764

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 144/294 (48%), Gaps = 13/294 (4%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAER--ALTEKNEALRK 564
           +R+ L+     L   + E+  + +  AQ    +    N  +    ER   L +   A + 
Sbjct: 326 KRQWLESEKAFL-GQIGEHLAVAIYQAQLYAQVQEQKNNFEQRVIERTQELRDTLVASQA 384

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTILL 621
           A+  K+ F+ ++S+ELR+PLT IIG +  L      S N    KQ +Y++ I  S   LL
Sbjct: 385 ANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESSNLPIDKQKKYLQTIQNSGKHLL 444

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGS 679
           +++N+IL+ + + +G   L      L  +   V Q ++ +      N+ + +  + +  S
Sbjct: 445 DMINEILEYSNLQSGKYVLAVREFSLMKVAKNVIQRVSDEAEHRRINLELDLQINAQQDS 504

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F AD +R+ QI   +L+NA+ F+S+  TV L+  R+N      V++ G  I E+    +F
Sbjct: 505 FYADPERVQQILYHLLNNALKFTSENGTVTLRIWRENNQVSLEVEDTGIGIKEEQIPLLF 564

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             F    +  +R   G GLGL++ +  + LHGG + + S     +T   R+P++
Sbjct: 565 ESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVESIINQGSTFIVRLPNQ 618


>gi|90408287|ref|ZP_01216452.1| putative sensor histidine kinase/response regulator [Psychromonas
           sp. CNPT3]
 gi|90310588|gb|EAS38708.1| putative sensor histidine kinase/response regulator [Psychromonas
           sp. CNPT3]
          Length = 919

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A ++K+ F+ ++S+ELR+PL  +IGF   L  +K+    S Q  Y+E I
Sbjct: 276 ELDLIRKKAQQAAKVKSEFLANMSHELRTPLNGVIGFARQLLKTKM---TSSQVDYLETI 332

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++NDILD + ++AG + L +    L D ++E    +A   HE  + + V+ 
Sbjct: 333 ERSAANLLHIINDILDFSKIEAGKLMLEHIPFDLRDCIDETMYLLAPSAHEKGLELSVLI 392

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGS 728
           D  +  S + D  RL QI + ++ NA+ F+ +G   V ++   D    I    S+ + G 
Sbjct: 393 DANVTQSVLGDAMRLQQILTNLIGNAIKFTQQGDIEVKIQQVADKKGLITLKISISDTGI 452

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I +     +F  F         Q  G GLGL I +  I    G +   S ++  +T   
Sbjct: 453 GISKQQQAQLFCAFGQADSSITRQYGGTGLGLVITQKLIQKMQGEIHFYSVEDQGSTFWF 512

Query: 787 RI 788
            I
Sbjct: 513 NI 514


>gi|288871335|ref|ZP_06117244.2| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288863842|gb|EFC96140.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 894

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 10/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+   L  + E    A   K+ F+  +S+E+R+PL  I+G  +L K         +    
Sbjct: 354 RSNELLRLEKERAEAASRAKSDFLSQMSHEIRTPLNGIMGMVELGKNHI--DEPGRMRNC 411

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ SST LL+L+NDILD++ +++G ++L+     L  LL  +      +     I  
Sbjct: 412 LDKITFSSTHLLSLINDILDMSKIESGKIELHPELFDLGKLLRALTTVFHVQAINRQIDF 471

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDF--IFSV 723
           ++   G++    V D  RL QI + +LSNA+ F+    +V L      RD+      F V
Sbjct: 472 QIFLRGEVTEYLVGDALRLNQILTNLLSNAVKFTPAQGSVNLNIETLRRDDHRIWLRFEV 531

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I  +    +F  F            G GLGL I  SF  + GG +++SS     
Sbjct: 532 KDTGRGIAPENIHRIFEPFTQENSGIARNYGGTGLGLPITRSFTEMMGGSITVSSEVGTG 591

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 592 SVFTVDLP 599


>gi|153932079|ref|YP_001382738.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|153934988|ref|YP_001386289.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|152928123|gb|ABS33623.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152930902|gb|ABS36401.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 615

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 172/391 (43%), Gaps = 16/391 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           + +  N   Q +++ +    + ++ E      I +  + + V    G+I  +N   + + 
Sbjct: 198 VNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILV-HRYGKIIFANERLKQML 256

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLF---AAIITSFDDERKSLQGTLELLSDS 524
             ++        I+++         ++   +L+     ++    +   + + T++  S  
Sbjct: 257 GYKKEYNFEDIDIKSLIPKDEYNTVKNKLENLYYGSENVVNFQHNVINNKEKTIQNTSTY 316

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELR 581
           V+ Y  +P   +  +    +     + E+ + +  E L +    +++   F+ ++S+EL+
Sbjct: 317 VI-YDGMPTIFS-ILHDVTSKIQVEKFEQDVKKNIELLNESREYNKLITEFLSNISHELK 374

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I     LL   +      KQ +Y++ I  +   L+ L+N++LD   +D+G +KLN
Sbjct: 375 TPLNVIFTAVQLLGFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLN 434

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                + +L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSN++ F
Sbjct: 435 LVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLLSNSIKF 494

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
           ++ G  + +       +    VK+ G  IP D  +S+F RF          + G G+GL 
Sbjct: 495 TNPGGNIFVNVKDCGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKEGTGIGLH 554

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +V+SF+ +H G V I S     T    ++P+
Sbjct: 555 LVKSFVEMHNGTVHIKSELGQGTEFIIKLPA 585


>gi|91070494|gb|ABE11403.1| two-component sensor histidine kinase [uncultured Prochlorococcus
           marinus clone HOT0M-1A11]
          Length = 688

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 162/390 (41%), Gaps = 47/390 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  + L++ E   L     +  I   
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKNFLNEIPEI 347

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            S   +     +         DD R SL     TL ++  SVL+ + I L          
Sbjct: 348 LSNDLH--INIESLLNREKEKDDLRISLGEPARTLRIVLQSVLDTNKIELKGIAV----- 400

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  +N F+ +VS+ELR+PL NI  + + L   K    N
Sbjct: 401 -TIQDLTREVEL----------NAAQNRFISNVSHELRTPLFNIKSYVETLHDLKDQLSN 449

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G + +    + +   + +  ++      
Sbjct: 450 EEQLEFLGIANSETDRLTRLVNDVLDLSRLESGKI-IQLEEMDIKPAIEQTLRNYRLNAT 508

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------- 713
           E N+ +    +  + S + +   LLQ+F  ++ N + FS K S+++++A           
Sbjct: 509 EKNVSLAHDIEETIPSILGNFDLLLQVFDNLVGNGLKFSPKNSSLMIRAYTWPDSCPAFP 568

Query: 714 ---RDNG-----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGL 758
              R++G                + + GS I +   + +F+RF    +     +G GLGL
Sbjct: 569 PDDRNHGAPQCELISPLPKVRIEITDTGSGISQADQEKIFDRFYRVENSVHTEQGTGLGL 628

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           SIV   I  HGG + ++S     TT    +
Sbjct: 629 SIVRGIIEKHGGEIRMASELGVGTTFWFDL 658



 Score = 45.3 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 21/149 (14%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D    +   N +   L+  +  FL      +
Sbjct: 283 DEANIEELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKNFLN 342

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPR- 409
           E+ E L +   +                  + E  KD   +  G   +TL +++ S    
Sbjct: 343 EIPEILSNDLHI------------NIESLLNREKEKDDLRISLGEPARTLRIVLQSVLDT 390

Query: 410 -----GGTIWMFENLTVQVDLETKYNTLV 433
                 G     ++LT +V+L    N  +
Sbjct: 391 NKIELKGIAVTIQDLTREVELNAAQNRFI 419


>gi|78062490|ref|YP_372398.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77970375|gb|ABB11754.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 672

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 23/371 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D   + +       RI   NPA R ++  +  + +       IA    R++   
Sbjct: 154 LLRHVVDASPDAIVGVDAARRITSWNPAARRIFGIDAAQAAGRDVAAMIAPRWLRHHPLP 213

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-- 552
             +    A +   D       G     +     ++  P+ + Q   T +++T     E  
Sbjct: 214 ASFANLHASVGPLDVLCVRRDGGRFRAT-----FAAAPMVDTQGNCTGLSMTLRDAHERR 268

Query: 553 ----------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                     R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L+      L
Sbjct: 269 RGERRNLRSLRGARDARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRNVDGQGL 328

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                Q V+ I  S+  L ++V D+LD +++  G ++L    + L  ++ +  + +    
Sbjct: 329 ---AQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRVVRDTTRELDATA 385

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + + +            ADR+R+ Q+ S +LSNA+ F+  G  +++  AR       S
Sbjct: 386 QASGLELSTHYAMPTCVIPADRERVRQVLSNLLSNAIKFTPPGGRIVVSLARAGERVRLS 445

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS-DE 779
           V + G  I  +    +F  F          +RG+GLGLSIV +   LHGG V  +S+   
Sbjct: 446 VADTGQGIAPEYLPHLFETFSRPERAFASPKRGLGLGLSIVRNIAQLHGGDVVATSAGPG 505

Query: 780 GVTTINCRIPS 790
             TT+   +P+
Sbjct: 506 RGTTVTVTLPA 516


>gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 788

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/586 (19%), Positives = 219/586 (37%), Gaps = 82/586 (13%)

Query: 271 HGNNKSYKIVRVLN--SFGEAGIAI---DVSKEITVNDQLTHTYEILHNLTVAIAIF--- 322
            G+     +   +   S G+A I I   D+++     D L  + E L  ++     +   
Sbjct: 69  DGSEFWVHLSATIGHDSDGQAEIHIAINDITERKQAEDALRKSEEHLRIVSDNATDWEYW 128

Query: 323 -DQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
              +  L++ + S  E+ E     F+  +P          +  ++    +   W E++  
Sbjct: 129 RGPDGKLKWVSPSCKEITEYTPEEFMGESPL---------AIQQIVYPEDQGLWLEHLKQ 179

Query: 381 VYKSSETHKDTWHL---PNGQTLHV--IVTSNPRGGTIWM-----FENLTVQVDLETK-- 428
           +      H +        +G  + +  I         +++       ++T +  +E    
Sbjct: 180 LDTQEPPHLELEFRIIKRSGDVVWINHICKPIYSREGVYLGRRVCNRDITARKTIEKALT 239

Query: 429 --------------YNTLVKVQGET-------IDHL-SEGV----AVFGPDGRIKLSNPA 462
                         + +L +   ET       ID L  +G+         DG  + +   
Sbjct: 240 FLATCCSARSGVAFFESLARYLAETLGMDFVCIDRLEGDGLNARTLAVYFDGHFEDNITY 299

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                   +          +             G    + +  +  D      G + ++ 
Sbjct: 300 ALKDTPCGDVVGKESCCFPHDVRGLFPKDAVLQGMQAESYVGITLWDSAGRPNGLIAVIG 359

Query: 523 -----DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                D  L  SI+ L   +         + ++AE AL     A   A++ K+ F+ ++S
Sbjct: 360 RTPLKDPWLAESILQLAGVRA----GGELERLQAEEALQSAKIAAESANKAKSVFLANMS 415

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  ++G   LL T+   + N +Q +Y+     S+  L  L++DILD++ ++AG 
Sbjct: 416 HEIRTPLNGVLGMLQLLDTT---APNDEQKEYLLGAVQSTNRLARLLSDILDISRIEAGR 472

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
           M +      + +  + +K+  A +     + ++      L    + D  RL QI   ++ 
Sbjct: 473 MDIVELEFNIQNTWDSIKELFALEARRKGLILEFGCVKDLPLLLIGDEVRLRQILFNLVG 532

Query: 697 NAMDFSSKGSTVILKAA---------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           NA+ F+ KG  + + A+               + +V + G  IPE+  K +F  FV    
Sbjct: 533 NAVKFTEKG-KIRIDASLLPLLPSSKSSAIRVLITVHDTGVGIPEEYIKDIFEPFVQADG 591

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              RR  G GLGLSIV   + L GG ++I S+    T     +P K
Sbjct: 592 SYTRRFQGAGLGLSIVSRLVKLLGGEIAIDSTPGEGTAFYISLPFK 637


>gi|237797729|ref|ZP_04586190.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331020579|gb|EGI00636.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 782

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 148/369 (40%), Gaps = 6/369 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     DG +   N     +    E  +        
Sbjct: 266 ERERALRDNEERLRLIIEGVKDYGIFALDRDGYVTTWNAGAERIKGYTEQEIIGQHFSVF 325

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 326 YLPQECPQHPDMALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSHDELRGFSKIT 385

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL+   E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 386 RDISDRRVAEIALSTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 444

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   + +I  +   LL L+N++LD+A ++AG + LN   + L+ +L E    ++   
Sbjct: 445 ---QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLNLEPVPLSSVLREALVLVSPMA 501

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + +I +  +         VADRQRL+Q+   +LSNA+ ++     V ++  +  G    
Sbjct: 502 TDASIELSELPQLPDELGVVADRQRLIQVLLNLLSNAIKYNRPDGKVRIEVGQSAGRVTV 561

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++    
Sbjct: 562 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGGLSVDTTLNEG 621

Query: 782 TTINCRIPS 790
                 +PS
Sbjct: 622 CRFTLELPS 630


>gi|227537041|ref|ZP_03967090.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243133|gb|EEI93148.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 437

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 155/377 (41%), Gaps = 23/377 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +   +  +   ETK    V     T++ L +       +G+I+  N  +     + E   
Sbjct: 82  LISEIETRKKAETKLKERVDHLHSTLESLPQIAFTANAEGQIEFVNEKWFKYSISAETFP 141

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                 +NI           +  +L   I        K +   +           IIP+ 
Sbjct: 142 KTHPDDKNIRDEWLLAMGSGNALELEVRI--------KEIDADIFRFH----LLRIIPIR 189

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + ++ +V                +  ++ ++ K+ F+   S+EL++PLT+I  +  LL
Sbjct: 190 EQEVIVKWVGTF----------TDIDDQKQIEKKKDEFLSIASHELKTPLTSIKAYIQLL 239

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +     +S  S+Y+  +    + L +L+ D+LD++ +D G +K+N       +LL+ V
Sbjct: 240 ERTLNAEHSSSTSKYLNTVQNQVSKLNSLIADLLDISKIDNGKLKMNKKLFNFENLLSNV 299

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +I      +NIRI+   D      + D  R+ Q+    L+NA+ +S     VI+K  +
Sbjct: 300 VDTIYHTHENSNIRIEREGDAIDQPVLGDEIRIEQVLINYLTNAIKYSPDSKRVIIKTEQ 359

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVS 773
           +N      V + G  IPE   K++FN+F        + +G+G+GL I    I  H G   
Sbjct: 360 ENTQIKVDVTDFGIGIPEHKQKNIFNKFYRVEESSLKFQGLGIGLYICSEIIRQHNGTFG 419

Query: 774 ISSSDEGVTTINCRIPS 790
           I S     +T    IP 
Sbjct: 420 IQSQTGQGSTFYFTIPL 436


>gi|120610910|ref|YP_970588.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
 gi|120589374|gb|ABM32814.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
          Length = 839

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/503 (18%), Positives = 184/503 (36%), Gaps = 30/503 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +         +L ++   I   D++    + N  +  LW    A          +  
Sbjct: 348 QERIARSERDLALLLRSVQELIFRTDRDGVFTYVNARWNALWGEPPA--------SAIGR 399

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-NPRGGTIWMF 416
            L+       Q       +        +   +    L   + L V         G +  F
Sbjct: 400 RLQDLVAPESQERVAAMLDPRSPSALRTRQLRVRSPLGGERVLDVAAVPLRAADGHVIAF 459

Query: 417 E----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
                ++T +   + +    V  Q   ++   + + +     R+ L N ++         
Sbjct: 460 AGSAVDVTERERGDQRLRAQVAFQNLLLETSPQPMMLTDLAHRVVLVNRSWEQ------- 512

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
             + G    +I       Y   +  +   +       ER    G     +  VL+ ++  
Sbjct: 513 --AMGCPREHIVGERRALYPGEEADNAALSAGGGTTLERDLPYGDGTRRATRVLKAAVHG 570

Query: 533 LPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                   +   V++++   AERA  E  +A  +A   +  FV ++S+ELR+PL  IIGF
Sbjct: 571 DRGDVTGVLSILVDISEFREAERATREAYDAAEEAARTRTQFVANMSHELRTPLQAIIGF 630

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L       S + +       I A+   +L LVND+LD+A +++ I  ++     L   
Sbjct: 631 AEL---GSARSQDERLGAMFTDILAAGQRMLALVNDLLDVAKIESDIGTIHLERTDLRGH 687

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +  V + +   +      +++          AD +R  Q+   +L+NA+ FS  GS + L
Sbjct: 688 IRTVARELGPLVASRRQDLRIDLPQHPLVARADPRRFQQVVRNVLANAIKFSPDGSCIQL 747

Query: 711 KAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLH 768
           +A  D        V++ G  IP    + +F+ F  ++    R  G GLGL+I    +   
Sbjct: 748 RAGMDAEDTICIEVQDQGPGIPPAELERIFDAFAQSSRTRNRSGGTGLGLAICRKIVEAL 807

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G +   +  EG       +P++
Sbjct: 808 EGRIHARN-VEGGAVFRIELPAR 829



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 81/267 (30%), Gaps = 31/267 (11%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQT 108
               + +      + E+  +  +       N     +W     +   IG+  Q +  P++
Sbjct: 352 ARSERDLALLLRSVQELIFRTDRDGVFTYVNARWNALWGEPPASA--IGRRLQDLVAPES 409

Query: 109 DTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG---RVSGSCAF 165
              + +    L       L     ++R              +  + +     R +     
Sbjct: 410 QERVAAM---LDPRSPSALRTRQLRVRSP---------LGGERVLDVAAVPLRAADGHVI 457

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
               +  G   ++ E     ++L   ++   +L ++    +   D A  ++  N S+++ 
Sbjct: 458 ----AFAGSAVDVTERERGDQRLRAQVAFQNLLLETSPQPMMLTDLAHRVVLVNRSWEQA 513

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
               G   +  +GE R L+  E       S+         +     G  ++ ++++    
Sbjct: 514 M---GCPREHIVGERRALYPGEEADNAALSAGGGTTLERDLP-YGDGTRRATRVLKAAVH 569

Query: 286 F------GEAGIAIDVSKEITVNDQLT 306
                  G   I +D+S+         
Sbjct: 570 GDRGDVTGVLSILVDISEFREAERATR 596


>gi|170749079|ref|YP_001755339.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655601|gb|ACB24656.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 991

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/573 (17%), Positives = 219/573 (38%), Gaps = 31/573 (5%)

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
           GE ++L      +     +A  +    T+   E        +     + G   +   +++
Sbjct: 159 GEGKRLMDAIRAEAAARQAATLEQL-ATLQAREGWRGLLLFLTSAAAALGAIVL---LAR 214

Query: 298 EITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
              V  Q +         +L N  V +   D++  ++  NR+   + E         P  
Sbjct: 215 LALVRRQESLRMSRLLDGVLANAPVGLGFLDRDLKIRHMNRALATMSERGFGADLGAP-I 273

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--- 409
             +L  LR      E+L  K        +   +           G   H  ++  P    
Sbjct: 274 WAMLPTLR------EELAPKLAAALTEGLVSPNVPVAVPTPSAPGGVRHFSMSFYPLRGE 327

Query: 410 ---------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                     G   +  + T++   E +     +     I+  +  V    P+G +    
Sbjct: 328 ESAAADQSVEGVGLVVVDETIRHLAEARLRRSEERFRSLIEASAAIVWTANPEGSLHRRQ 387

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A+      +E   +    +  I      +   +    + +    + +   ++  G    
Sbjct: 388 TAWTRFTGQDEAAYAGLGFLDAIHPDDRAHTRAAWTRAVTSLEPYATEHRMRAASGAYRH 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +S   +          + + T  ++T+   AE A+     A   A+  K+ F+ ++S+EL
Sbjct: 448 MSVRAVPILEPDGTLREWVGTHTDITERKEAEAAIEAARAAAEAANAAKSQFLANMSHEL 507

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL+ +IG++++++        +     ++ I  ++  LL L+ND+LD++ ++A  +++
Sbjct: 508 RTPLSAVIGYSEMVQEELEDIGEADLVTDMKKIETNARHLLGLINDVLDISKIEADRVEI 567

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 +  ++ EV  ++   + +    + +  +  LGS   D  +L Q    +LSNA  
Sbjct: 568 YAEDFEVAAVVQEVAVTVEGLVAKKGNTLALELEPNLGSAHTDVTKLRQCLINLLSNAAK 627

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F+  G  + L   R +G   F+V + G  + ++    +F RF        RR  G GLGL
Sbjct: 628 FTEDG-RITLAVTRADGALRFAVTDTGIGMTQEQLGKLFERFTQADASTTRRFGGTGLGL 686

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I  +F  + GG +++ S D   TT    +P++
Sbjct: 687 AITRAFAEMLGGAIAVESRDGAGTTFTLTLPAR 719


>gi|163756235|ref|ZP_02163350.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
 gi|161323847|gb|EDP95181.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
          Length = 782

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 169/405 (41%), Gaps = 43/405 (10%)

Query: 411 GTIWMFENLTVQVDLE--------TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
             I   E++  ++  E         +     K+    I +  +   +F  DG I  SN  
Sbjct: 247 AQISSLEDINSKLSKEIFQKSQIQKELENNEKLYAAVIHNSLDANIIFNVDGIIIRSNKK 306

Query: 463 FRSLWKTEENRLSPGT--------HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
                   EN+++            ++ I    SR  +     D F   +          
Sbjct: 307 AVEFINAHENQINFYKLLPKEFSEKLKTIIDAFSRNTSSGLAQDFFEFEV---------- 356

Query: 515 QGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERALTEKNE---ALRKADEIK 569
                  +   + Y+  + P+     ML F  + D  +  R +    E      K+ + K
Sbjct: 357 -----YKNGETIYYNLKVNPIYINNKMLFFCVIRDISKDIRNMIRIEEARVIAEKSAKAK 411

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +F+ ++S+E+R+PL  I+G ++L           K+ + +E I  S+  LL +VNDILD
Sbjct: 412 TTFLSNMSHEIRTPLNVILGLSELFNRKDFTG-TEKEYENIEAIRFSTENLLMIVNDILD 470

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
            + ++AG + +        +L++ + +    K  E  +   +     +    V D+ RL 
Sbjct: 471 FSKIEAGKLNVQKVDFNFTELISNLNKGFRLKAEEKGLDFSINITNSIPKYIVGDQYRLS 530

Query: 689 QIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QI + ++ NA+ F+ KG     +  K   D      F+++++G  IP++   S+F  F  
Sbjct: 531 QILNNLIGNAIKFTKKGFINVNITAKVLEDKTLQLYFTIEDSGYGIPKENLNSIFESFYQ 590

Query: 745 NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             H  Q+ +G GLGLSI +  ++L GG++++ S     TT +  +
Sbjct: 591 TYHSEQKPKGTGLGLSITKELVSLLGGNLTVKSEVNVGTTFDFDL 635


>gi|310658354|ref|YP_003936075.1| histidine kinase [Clostridium sticklandii DSM 519]
 gi|308825132|emb|CBH21170.1| putative Histidine kinase [Clostridium sticklandii]
          Length = 965

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 136/248 (54%), Gaps = 10/248 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + ++ L +  +   +A+E K+ F+  +S+E+R+PL  I G   LLK + +      QS
Sbjct: 303 REQIQKDLKKAKKEADEANEFKSGFMARMSHEIRTPLNAITGMAYLLKKTDISLT---QS 359

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            YV+ I+ +S  +L+++NDILD + ++AG +++  ++  ++D++  V   ++ K+ E  I
Sbjct: 360 MYVDRITQASNNMLSIINDILDFSKIEAGKVEIEEASFSIDDIIQNVVNIVSYKIEEQEI 419

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN-GDFIFS 722
             ++  D +L   F+ D +R+ Q+   IL+NA  F+ KG     + L A   +     F+
Sbjct: 420 GFRLSKDSQLPNWFIGDPKRIEQVLLNILNNAAKFTQKGEVALDIRLIAKESDIYHISFN 479

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           +K+ G  + +   + +F+ FV       RR  G GLGLSIV++ + + GG +++ S+ + 
Sbjct: 480 IKDTGIGMTQQQVEKLFSPFVQGDSSINRRFGGSGLGLSIVKNLVEMMGGSINVFSTPDE 539

Query: 781 VTTINCRI 788
            +T    +
Sbjct: 540 GSTFIINL 547


>gi|220909137|ref|YP_002484448.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865748|gb|ACL46087.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1954

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/417 (22%), Positives = 170/417 (40%), Gaps = 39/417 (9%)

Query: 403  IVTSNPRGGTIW--MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +  S P    +   +FE  +T  ++L   ++   ++     D LSE +A+      I  S
Sbjct: 1097 LGESTPLNAVVLPVLFEGQVTAVIEL-ASFSRFSEIHLTFFDQLSESIAIVL--NTIAAS 1153

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                  L +++       T  + +  T  R   ++        ++ S  ++ +     L+
Sbjct: 1154 MRTEELLKQSQSLAEELQTQQKELTGTNQRLEQQAQSLKASEELLKSQQEQLQQTNAELQ 1213

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              ++         L   Q         +  +A R+L EK E L  + + K+ F+ ++S+E
Sbjct: 1214 EKAE---------LLALQNWEVERKNQEIEQARRSLEEKAEQLSLSSKYKSEFLANMSHE 1264

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            LR+PL +++    LL  +   +L  +Q +Y   I +S   LL L+NDILDLA +++G + 
Sbjct: 1265 LRTPLNSLLILAKLLADNPEQNLTERQVEYAATIFSSGNDLLELINDILDLAKIESGTIA 1324

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
            ++   I  ++L  ++++S        N+  +V     L + F  D +RL QI   +L+NA
Sbjct: 1325 VDIEPISFSELGRDLERSFREVAINRNLDFQVQFSELLPARFHTDPKRLRQILKNLLANA 1384

Query: 699  MDFSSKGSTV---------------------ILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              F+  G                         +    + G   F V + G  IP D  + 
Sbjct: 1385 FKFTEAGHVRLTVEPAVAGWSADQTFLNQAARVAPRGETGVIAFRVSDTGIGIPLDKQRI 1444

Query: 738  VFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F  F         +  G GLGLSI      L GG + + S     +T    +P  E
Sbjct: 1445 IFEAFQQADGTTSRRYGGTGLGLSISREIARLLGGEIRLESQVGRGSTFTLYLPQLE 1501


>gi|169829555|ref|YP_001699713.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
 gi|168994043|gb|ACA41583.1| Alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
          Length = 498

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 160/393 (40%), Gaps = 30/393 (7%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +I  S+         +++T   ++E       +     I+++   + + G +G I + N
Sbjct: 132 RMIPLSHSINILARNLQDITTVREVEE------ERLKTLIENMGSSLMMIGREGNISIVN 185

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             F             G  I  +     R        + F   +    +     Q  +E+
Sbjct: 186 RVFLE---------RFGMQIDEVQGKVFRTIGLPKSLEQFIDHVF-LTEMPYRQQIKMEI 235

Query: 521 LSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             +    E    P+         V +      E         L + ++I+  FV +VS+E
Sbjct: 236 KQELYNKEVYGAPVIGDHGRWLGVVIVMHDITE---------LVRLEQIRKDFVANVSHE 286

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+P+T+I GF++ L              ++E I   S  L  L+ D+L+L+ ++     
Sbjct: 287 LRTPITSIKGFSETLLDGAYKD-EKMLISFLEIIYKESNRLQMLIQDLLELSKIEQHGFT 345

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +N   + L D+L    +  A ++ E N+  +V  DG +   + D  R++QI + +++NA+
Sbjct: 346 VNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDGDV-QVMGDANRIIQIVTNLITNAI 404

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            +S + +TV ++   +    I  +++ G  I +     VF RF        R   G GLG
Sbjct: 405 TYSPENTTVSIRLKENETYGIIEIEDQGIGIEKHEIARVFERFYRVDRARSRNSGGTGLG 464

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+IV+  +  H G + + S     TT+   IP 
Sbjct: 465 LAIVKHLVEAHHGRIQVESEVGVGTTMIVMIPK 497


>gi|332528042|ref|ZP_08404075.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112615|gb|EGJ12408.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 521

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/504 (18%), Positives = 180/504 (35%), Gaps = 42/504 (8%)

Query: 323 DQNRYLQFHNRSFVEL------WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-- 374
           D +      + +          W++D   L+       +L + R  +  P Q +W     
Sbjct: 23  DGDARHALFHAALAGTGTFVWGWDLDTDRLSDVEEGLAMLGY-RPGDIGPTQADWDRLIH 81

Query: 375 --------------KENIFSVYKSSETHKDT-----WHLPNGQTLHVIVTSNPRGGTIWM 415
                               VY+     +D      W    G+ +       PR   +  
Sbjct: 82  PDDLAANHEAYLRHARGEVDVYEHCYRIRDAAGRWRWVRERGRIVERSADGRPR-RMLGT 140

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF--GPDGRIK--LSNPAFRSLWKTEE 471
             ++T   +L       ++       H+   +      P+ RI    ++   R+L+  E 
Sbjct: 141 QTDITELRELADTAQQALEGLARIARHVPGTLVQIHADPERRITFPYASERCRALFGIEP 200

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L+           C    +         A   + +  R   +          +     
Sbjct: 201 AELARDGR---ALLDCVEPEDRGPLRAAIRASARTLEPWRAEFR-VRRAGQLRWVRGEAT 256

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI---KNSFVQHVSYELRSPLTNII 588
           P   A     +    +     R L +  +    A      K  F+  +S+ELR+PL  ++
Sbjct: 257 PSRQADGSTVWHGYLEDATERRELEQARQDAAVAAAANRAKTEFLSRMSHELRTPLNAVL 316

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF  LL++  +   +  Q + ++ I  +   LL ++ D+LDL  +++G ++L  + + L 
Sbjct: 317 GFAQLLESDPVEPPSESQQRRIKLIREAGEHLLQMIGDLLDLTRIESGGIELRLAAVPLR 376

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  E    +A       + + +          AD  RL Q+   +L+NA+ ++  G  V
Sbjct: 377 PLAEEALAMVAGSAERAQVTLALADSAPGARVRADGTRLRQVLLNLLTNAIKYNRAGGRV 436

Query: 709 ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFIN 766
            L+ A   G +   +V + G  I  D  + +F  F    A RG+  G G+GL++ +  + 
Sbjct: 437 ELEIAAPQGRWQPLAVHDTGIGIARDERERLFEPFYRGRAVRGRVEGTGIGLALTQDLVV 496

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           L GG + + S     ++    +P+
Sbjct: 497 LMGGRIEVDSEPGRGSSFTVTLPA 520


>gi|290889604|ref|ZP_06552694.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429]
 gi|290480802|gb|EFD89436.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429]
          Length = 619

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 158/399 (39%), Gaps = 33/399 (8%)

Query: 404 VTSNPRGGTIWM-FENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + S    G +     +L+  +  ET   N         + ++++GV     DG I + N 
Sbjct: 231 IKSKDEIGILATQINDLSDTIASETATSNMESDRLNSLLSNMTDGVLAITRDGTITVINQ 290

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A   L        + G +I ++     +       +      +   D             
Sbjct: 291 AALDLLHIPRTDKAVGKNISDLLKLVDKKITLRKLFQSIRGFVVEPDGP----------- 339

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            D V    +  L   Q+            A   L +    L+  ++ KN FV +VS+ELR
Sbjct: 340 -DGVTLNVVASLVRRQSGFISG-------AVVVLRDVTRQLKLENDQKN-FVSNVSHELR 390

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT++  + + L+   L        +++      +  +++++ND+L+L+ +D G  K++
Sbjct: 391 TPLTSVNSYIETLQEGALTQ-KKIAREFLGVAHDETQRMIHMINDLLELSRMDQGRTKMD 449

Query: 642 YSTIVLNDLLNEVKQSIATKMHE-------NNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
              +     +N V         +       N+ +I    D K   +V  D  + +Q+   
Sbjct: 450 TEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDSDKFMQVVDN 509

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           +++NA+++S  G  + +     +   I S+K++G  IP+   ++VF RF        R  
Sbjct: 510 VINNAINYSPDGGNIEIGINETDDSIILSIKDHGLGIPKKDLENVFTRFYRVDKSRARKQ 569

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGL+I +  +    G + + S+    TT    +P 
Sbjct: 570 GGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 608



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 29/168 (17%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S+  T N +      +L N+T  +    ++  +   N++ ++L  I     A   +  +
Sbjct: 252 ASETATSNMESDRLNSLLSNMTDGVLAITRDGTITVINQAALDLLHIPRTDKAVGKNISD 311

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPR 409
           LL+           ++ K     +F   +      D    P+G TL+V+       S   
Sbjct: 312 LLKL----------VDKKITLRKLFQSIRGFVVEPDG---PDGVTLNVVASLVRRQSGFI 358

Query: 410 GGTIWMFENLTVQVDLE-----------TKYNTLVKVQGETIDHLSEG 446
            G + +  ++T Q+ LE            +  T +      I+ L EG
Sbjct: 359 SGAVVVLRDVTRQLKLENDQKNFVSNVSHELRTPLTSVNSYIETLQEG 406


>gi|288962795|ref|YP_003453089.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288915061|dbj|BAI76545.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 448

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/404 (22%), Positives = 166/404 (41%), Gaps = 51/404 (12%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E ++ +LV+            + V G DGR+  +N      +  E  +         +  
Sbjct: 49  ELRFRSLVQTAASI-------ILVLGADGRVLEANHEAERAFGLEVGQAVGRPWTEVMEE 101

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--------- 536
             +  +            I +F+   +  Q      S+ VL +++  LP +         
Sbjct: 102 RPNGAFATQLAMAAEGTEIRNFEQAVRDQQ----YRSERVLLWNLNRLPESDGAPAGILC 157

Query: 537 ----------------------------QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                                       +T      + +  RAE+AL +  E    A+  
Sbjct: 158 VGQDITRRKRAEMALRQARDELEMRVADRTRALMQEIQERRRAEQALIQAKEQAELANRA 217

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDI 627
           K+ F+ ++S+ELR+PL  IIGF+ ++++  +G L + K   Y + I  S   LL +++DI
Sbjct: 218 KSEFLANMSHELRTPLNAIIGFSSMMESEIVGPLGHPKYLDYAKVIGKSGQHLLAVISDI 277

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD+A ++AG ++++   + + D +      IA +  E  + +           + D  R+
Sbjct: 278 LDVAKIEAGKLEMHPQPMDVRDAVESSLLLIAERAKEGGLTLVQDIAPDTPRLLGDPVRV 337

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +L+NA+ F+  G +V L+   + G  +  V ++G  +  +        F     
Sbjct: 338 KQILLNLLANAVKFTPAGGSVTLRVRPEGGRILIEVADSGIGMSAEGIAIALQPFGQVDS 397

Query: 748 --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  G GLGL +V SF+ L  G + I S +   TTI+ R+P
Sbjct: 398 QLSRRSGGTGLGLPLVRSFVELLNGTLDIRSREGEGTTISVRLP 441


>gi|229590478|ref|YP_002872597.1| putative two-component system histidine kinase/response regulator
           fusion [Pseudomonas fluorescens SBW25]
 gi|229362344|emb|CAY49246.1| putative two-component system histidine kinase/response regulator
           fusion [Pseudomonas fluorescens SBW25]
          Length = 1184

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 163/366 (44%), Gaps = 14/366 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ ++         G I  S  A R   + +E           +     
Sbjct: 384 LRPLQERDEELLELIA---------GNIGTSIEAARYRQRLQEVLAETQQLNEELQVQQE 434

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + I+       ++ Q  LE  ++ + E +       Q         + 
Sbjct: 435 ELKTANEELEEQSRILKESQAHLETQQAELEQTNEQLAEQTQTLAE--QRDAMDRKNVEL 492

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A+  L ++ E L+++ + K+ F+ ++S+ELR+PL + +    LL  +   +L+++Q +
Sbjct: 493 NQAQLELEDRAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVK 552

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD++ V+AG +++      +  L++ ++        +  + 
Sbjct: 553 FAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVARLVDGLRGMFEPLAADRKLG 612

Query: 669 IKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +V   +G       DRQRL QI   +LSNA+ F+ +G   +  +        F+V+++G
Sbjct: 613 FQVDVQEGSPTMLFTDRQRLEQILKNLLSNAIKFTEQGDVSLSVSRAPGEGIAFTVRDSG 672

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  +S+F  F        RR  G GLGLSI      L GG++S++S     +   
Sbjct: 673 IGIAPDQQESIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGYISVASEPGKGSIFT 732

Query: 786 CRIPSK 791
             +P +
Sbjct: 733 LVLPEQ 738


>gi|332532904|ref|ZP_08408776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis ANT/505]
 gi|332037570|gb|EGI74022.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis ANT/505]
          Length = 1587

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/723 (16%), Positives = 246/723 (34%), Gaps = 139/723 (19%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            + G + +++E      +L      F  L  ++  +++       +    +S ++ +E  G
Sbjct: 605  MIGTHLDISERKSTELELQGSRDRFASLVSNIPGIIYRCRFDEKLSMLYMS-EQASEITG 663

Query: 231  IVFQKAIGESRKLFKEEI---------KKRMISSSALEKNFCETVSTLEHGNNKSYKIV- 280
                + I +    F + I          + +   SA +    E   T   G         
Sbjct: 664  YSPDELIHDEPPSFFDLICEDDSKKIKDEILRCVSAKQSWSVEYRITARDGTLHWVNEKG 723

Query: 281  -RVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLT----VAIAIFDQNRYLQFH 331
              +    G      G  +D+++      ++     +L +++    +     D + +  + 
Sbjct: 724  QAIYADDGSILYLDGFILDITERYNTQLKINRQQSLLESMSKQGQIGAWEMDLDAHTLYW 783

Query: 332  NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
            +     + E+   F    PS D  + F +              ++ I ++++ + T  ++
Sbjct: 784  SDEVKVIHEVPEGF---EPSIDTAINFYKPG----------IHRDTISTLFECAVTLGES 830

Query: 392  WH----------------------LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-- 427
            W                       L +G+ + V  +          F+++     LE   
Sbjct: 831  WSVELIILTYSGQERWVKSMGQAELKDGKCVRVFGS----------FQSIDAHKRLELES 880

Query: 428  ----KYNT----------------------LVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
                +YN                        VK   E ++     V +F     +   + 
Sbjct: 881  EKANRYNKNLAALTVAPEVQNSDVEQVKKLAVKSMCEVLNVARASVWIFNEKRDVMTCHS 940

Query: 462  AFRSLWKTEENRL-----SPGTHIRNI----AATCSRYYNESDGWDLFAAIITSFDDERK 512
             + +     +            +   I           Y  S   D   A +T  +   K
Sbjct: 941  LYINGQGFVDTDAILTAKDYPAYFNAIYKHNLVAIDDVYTHSATVDFIEAYVTPLN--IK 998

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-------------------- 552
            S+   +    D  L      +  A+T+    N T S                        
Sbjct: 999  SMLDAVIATGDGNL-----GILCAETVGEHHNWTQSEETYLRSLATLVGSTLVSQKRKVI 1053

Query: 553  -RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
               L         A   K+ F+  +S+E+R+P+  ++G  +L++   L SL+      V+
Sbjct: 1054 SEELKVALVKAEDAAIAKSQFLATMSHEIRTPMNGVLGMLELVQ---LESLSKPIETKVD 1110

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
                S+  LL ++NDILD +  +AG ++L        DL+ EV  + A    +  I I +
Sbjct: 1111 IAKKSAHSLLGVINDILDFSKAEAGKIELEEINFNGRDLIGEVAAAQAFTAQDKGIEIIL 1170

Query: 672  I-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNG 727
                 +      D  R+ Q+ + +LSNA+ F+S+G  V+   +       +F+ S+K++G
Sbjct: 1171 DLVALEPSQLCGDPGRIRQVITNLLSNAVKFTSQGEVVVSAKINKVAQGLEFVVSIKDSG 1230

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              I  +  + +F  F        R   G GLGL+I +    L GG +S++S     +T  
Sbjct: 1231 IGISLEKQEQLFTPFSQVDASTTREYGGSGLGLAICKQLCELMGGAISLTSEAGKGSTFT 1290

Query: 786  CRI 788
              I
Sbjct: 1291 ATI 1293



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/381 (13%), Positives = 115/381 (30%), Gaps = 44/381 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  + +   +  K+L+   S                D  G I + N  +    E  G   
Sbjct: 356 LQKQRSALQIALKQLAEQKSALDEHAIVA-----VTDLHGTITFVNKKF---CEISGYDE 407

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETV------STLEHGNNKSYKIVRVLNSFG 287
            + IG++ +L      ++       +      +      +  +HG              G
Sbjct: 408 HELIGQNHRLLNSGKHEKAFFKDMYKTLKRGDIWNGQICNKAKHGGIYWVDTTIAPFLDG 467

Query: 288 ------EAGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFD---QNRYLQFHNRSF- 335
                    I  D++       +L      L  +  + A+ I+D       + F+NR   
Sbjct: 468 NGKPQNYIAIRTDITALKLQELELEQHKTQLQLVIDSTAVGIWDWYIDTNKVTFNNRWAE 527

Query: 336 ---VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-- 390
               +L EI+   + T  +     + + S  KL E    +T     + V ++   HK+  
Sbjct: 528 IIGYKLSEIEPCTINTWYTYAHSDDLVISNKKLQEHFAGET----DYFVSEARMKHKNGH 583

Query: 391 -TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
             W L   + +      +P+   I    +++ +   E +           + ++  G+  
Sbjct: 584 WIWVLDTAKVVEWNTDGSPK-RMIGTHLDISERKSTELELQGSRDRFASLVSNIP-GIIY 641

Query: 450 ---FGPDGRIKLSNPAFRSLWKTEENRLSPGTH---IRNIAATCSRYYNESDGWDLFAAI 503
              F     +   +     +     + L           I    S+   +     + A  
Sbjct: 642 RCRFDEKLSMLYMSEQASEITGYSPDELIHDEPPSFFDLICEDDSKKIKDEILRCVSAKQ 701

Query: 504 ITSFDDERKSLQGTLELLSDS 524
             S +    +  GTL  +++ 
Sbjct: 702 SWSVEYRITARDGTLHWVNEK 722



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 53/435 (12%), Positives = 135/435 (31%), Gaps = 62/435 (14%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW-HRDQAGDILWANISYKKNTETEGI 231
            I +++    L+  +L  H +  +++ DS    +W        + + N  + +    +  
Sbjct: 476 AIRTDITALKLQELELEQHKTQLQLVIDSTAVGIWDWYIDTNKVTFNNR-WAEIIGYKLS 534

Query: 232 VFQK-------AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL- 283
             +            S  L      K++    A E ++  + + ++H N     ++    
Sbjct: 535 EIEPCTINTWYTYAHSDDLVISN--KKLQEHFAGETDYFVSEARMKHKNGHWIWVLDTAK 592

Query: 284 --------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI------AIFDQNRYLQ 329
                   +     G  +D+S+  +   +L  + +   +L   I        FD+   + 
Sbjct: 593 VVEWNTDGSPKRMIGTHLDISERKSTELELQGSRDRFASLVSNIPGIIYRCRFDEKLSML 652

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           + +    E+       L  +       + +          + K  K+ I     + ++  
Sbjct: 653 YMSEQASEITGYSPDEL-IHDEPPSFFDLICED-------DSKKIKDEILRCVSAKQSWS 704

Query: 390 DTWHL--PNGQTLHVIVTS----NPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETI 440
             + +   +G    V           G  +++     ++T + + + K N     Q   +
Sbjct: 705 VEYRITARDGTLHWVNEKGQAIYADDGSILYLDGFILDITERYNTQLKINR----QQSLL 760

Query: 441 DHLS----EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           + +S     G      D      +   + + +  E        I           +    
Sbjct: 761 ESMSKQGQIGAWEMDLDAHTLYWSDEVKVIHEVPE---GFEPSIDTAINFYKPGIHRDTI 817

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT----MLTFVNVTDSVRAE 552
             LF   +T  +    S    L +L+ S  E  +  +  A+      +       S+ A 
Sbjct: 818 STLFECAVTLGE----SWSVELIILTYSGQERWVKSMGQAELKDGKCVRVFGSFQSIDAH 873

Query: 553 RALTEKNEALRKADE 567
           + L  ++E   + ++
Sbjct: 874 KRLELESEKANRYNK 888



 Score = 44.9 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 87/297 (29%), Gaps = 38/297 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S       QL      L    + +A+ D +  + F N+ F E+   D   L         
Sbjct: 361 SALQIALKQLAEQKSALDEHAI-VAVTDLHGTITFVNKKFCEISGYDEHELIGQ------ 413

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNP--RGG 411
                +   L    + K + ++++   K  +           +G    V  T  P   G 
Sbjct: 414 -----NHRLLNSGKHEKAFFKDMYKTLKRGDIWNGQICNKAKHGGIYWVDTTIAPFLDGN 468

Query: 412 -----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 I +  ++T     E +           ID  + G+  +  D      N  +  +
Sbjct: 469 GKPQNYIAIRTDITALKLQELELEQHKTQLQLVIDSTAVGIWDWYIDTNKVTFNNRWAEI 528

Query: 467 WKTE--ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--- 521
              +  E            A +     +     + FA     F  E +        +   
Sbjct: 529 IGYKLSEIEPCTINTWYTYAHSDDLVISNKKLQEHFAGETDYFVSEARMKHKNGHWIWVL 588

Query: 522 -SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            +  V+E++    P  + + T +++++    E  L             ++ F   VS
Sbjct: 589 DTAKVVEWNTDGSP-KRMIGTHLDISERKSTELELQGS----------RDRFASLVS 634


>gi|262199743|ref|YP_003270952.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083090|gb|ACY19059.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 906

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 109/690 (15%), Positives = 225/690 (32%), Gaps = 60/690 (8%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
           +LR     + LV  +    A    GR        R L      S      +         
Sbjct: 107 RLRHAAGHWALVRISAEAVARDDSGRALRVAGICRPLDDSEPASRSEHEAIARMPSPPPT 166

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-----TETEGIVFQKAIGESRKLFKEE 247
                ++++L   +   D+ G +L  N S+                 + +          
Sbjct: 167 DAVAAVYEALPMGIALFDRGGRVLHCNPSFAGLLGYPLARVTDRKVAELVPSRGDRLIHC 226

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKS----YKIVRVLNSFGEAGIAIDVSKEITVND 303
           I + + + +ALE+   E V     G          +          G   DV++      
Sbjct: 227 IARVLDTGAALEEKLGE-VDVAPAGERVWNCHFVPVTLSDRRAAVCGAFHDVTEHQRAIV 285

Query: 304 QLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           Q   + E       N  V IA    +      N     L       L          +  
Sbjct: 286 QTQISEERFRGTFDNAAVGIAHVGFDGRWLRFNDRLCTLTGYPRDELR----ELTFQDIT 341

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTI 413
              +   +   ++         Y    + +  +   +G  + + +T +           I
Sbjct: 342 HPEDLDSDLACYQDLIAGRIEHY----SMEKRYLRRDGTCIWIQLTVSLGRVDGEASYGI 397

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            + E++T +  +E +     +     ++  SE + V  P+G     N A  +L+      
Sbjct: 398 SIIEDITHRKRIEERLRVSEEYIRAVVEQASEAIVVAAPEGDFIEVNSAMCALFGYSREE 457

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L     +   A       +E+  W    A     D+         +  +   +E S   L
Sbjct: 458 LLGRRILEFTADEDKERVSEASSWLRQQAGRVLLDE----WTIERKDGTRVPIEVSAKLL 513

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            + +      +V++  +AE AL             K+ ++  + +ELR+PL++I    +L
Sbjct: 514 SDGRGAAFIRDVSERKKAENALRVAG-------RQKDIYMAMLGHELRNPLSSIRAAVEL 566

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+      ++    +  + +   ++ +  LV+ +LD++ ++ G + L    + +  L+++
Sbjct: 567 LELGPTSDVD--LQRIHKSLMRQTSHMAKLVDGLLDVSRLELGRITLERQVLDIRGLVSD 624

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           V Q     + E    +      +      D  RL QI   +L+NAM F+ +   + +   
Sbjct: 625 VLQDYLVSIKERGQTLHSSIATEALPVSCDPARLSQILDNLLANAMQFTPRDGIITVNLQ 684

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR----------RGVGLGLSIVES 763
           R  G+ + ++++ G+ I  D+   +F  F        R                   V++
Sbjct: 685 RGKGEAVLTIRDTGAGIAPDLLPHIFEPFCQATQSIDRTAGGLGLGLAL--------VKT 736

Query: 764 FINLHGGHVSISSSD-EGVTTINCRIPSKE 792
            + LH G V   S       +    +P  E
Sbjct: 737 LVELHDGRVVARSPGLGAGASFEITLPLSE 766


>gi|114562225|ref|YP_749738.1| hybrid sensory histidine kinase BarA [Shewanella frigidimarina
           NCIMB 400]
 gi|114333518|gb|ABI70900.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 952

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 150/367 (40%), Gaps = 19/367 (5%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L+  +   ++     +A F     I L    F +L+ T          I  +    ++  
Sbjct: 191 LLNKENALLEQHRAAIAAF----IIVLIGVQF-NLFFTFRLVKHVNYPITEMVRVVAKIR 245

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                  L   +I   D  ++ +      LS+   E           +   +   +    
Sbjct: 246 EGKLDTRLEGNLIGELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNV 305

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYV 610
           E  L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L++ Q  Y+
Sbjct: 306 E--LDIAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLLKT----PLHTSQLDYI 359

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S++ LL ++NDILD + ++AG M L      L + L E    IA    E  + + 
Sbjct: 360 KTIERSASNLLGIINDILDFSKLEAGKMILEKMPFALRETLTETLTIIAGSAQEKGLELV 419

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKN 725
           +  D  +      D  R+ QI + ++ NA+ F+ KGS +    ++    DN      V +
Sbjct: 420 IDIDANVPESVSGDAMRVSQIITNLVGNAIKFTDKGSVILKIHLVGQDEDNITLRCEVID 479

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E   + +F  F        RR  G GLGL I +  IN  GG +  +S+    + 
Sbjct: 480 TGIGIDESQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINQMGGQIGFTSAPNKGSN 539

Query: 784 INCRIPS 790
               +P 
Sbjct: 540 FWFILPL 546


>gi|312885615|ref|ZP_07745251.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301927|gb|EFQ78960.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 783

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 10/246 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R   AL        +  + K+ F+  +S+E+R+PL ++IG + LL  +   +    Q 
Sbjct: 395 SHRVSFALKRARAQAEQGLKAKSEFLSTMSHEIRTPLNSVIGMSHLLLKT---NPRPDQV 451

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++++ +  S+  LL +VNDILD   ++AG +   ++ + +  +   +   +    ++  I
Sbjct: 452 EHLDVMLFSANNLLAIVNDILDYNKIEAGKIVFEHTEMDIASIAGNIVAGLQNSANDKGI 511

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFS 722
            +K+  D  L +  + D  RL Q+ S ++ NA+ F+  G     + +K   ++       
Sbjct: 512 GLKLQVDSALNNKVIGDPTRLFQVISNLVHNAIKFTQAGGVEVGITVKGQTEHDVTLSIW 571

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  I +D  K +F RF        R   G GLGL+I +  + L    + + S +  
Sbjct: 572 VKDTGIGISKDKQKLIFERFTQADSSTSRGFGGTGLGLAISKRILELQNSTLQLESEEGK 631

Query: 781 VTTINC 786
            +T   
Sbjct: 632 GSTFYF 637


>gi|288961674|ref|YP_003451984.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288913954|dbj|BAI75440.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1960

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 168/394 (42%), Gaps = 30/394 (7%)

Query: 413  IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            +   +++   ++L   +    +     ++ L+E + +         +N     L K  + 
Sbjct: 1104 VLFEDDVKAVIEL-ASFGRFSETHQSFLEQLTESIGIV---LNTIAANMRTEGLLKQSQR 1159

Query: 473  RLSP-GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
              S   +    + AT  R   ++        ++ +  ++  +    LE  ++ +      
Sbjct: 1160 LTSELQSQQEELTATNERLEQQAASLRKSEELLKAQQEKLTTTNEALEEKAEQL------ 1213

Query: 532  PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                 Q +       + V A+ AL EK E L    + K+ F+ ++S+ELR+PL +++  +
Sbjct: 1214 ---EKQNIEVERKNREVVFAKAALEEKAEQLALTSKYKSQFLANMSHELRTPLNSLLILS 1270

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             LL  +   +L+ +Q ++   I ++ + LL L+NDILDL+ +++G + L    +VL DL 
Sbjct: 1271 KLLADNPDTNLSDRQVEFARTIHSAGSDLLGLINDILDLSKIESGTVTLEIGEVVLGDLR 1330

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            N V+++ +    E  +   +  D  L +    D +RL Q+ + +LSNA  F+  G     
Sbjct: 1331 NHVERTFSQVAQEKKLAFTIEMDAALPAGIQTDEKRLSQVLNNLLSNAFKFTETGGITFR 1390

Query: 711  KAARDNGD-------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
             A    G                F+V + G  IPED  + +F  F         +  G G
Sbjct: 1391 VAPATGGWSAAHPTLDAAASVLAFTVIDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTG 1450

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LGLSI      L GG + ++S+    +     +P
Sbjct: 1451 LGLSISREIARLLGGEIRVASTPGKGSVFTLFVP 1484


>gi|149926094|ref|ZP_01914357.1| Signal transduction histidine kinase [Limnobacter sp. MED105]
 gi|149825382|gb|EDM84593.1| Signal transduction histidine kinase [Limnobacter sp. MED105]
          Length = 1023

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/546 (18%), Positives = 208/546 (38%), Gaps = 55/546 (10%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
                + R L    ++          +  +       ++    + IA+FD        + 
Sbjct: 360 RDILDLTRGLTEKSQSLE----HALKSAKESYWVVEALIVQAPIPIAMFDTEMNYVAASS 415

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS--VYKSSETHKDT 391
            +V+ +           ++ +++  L              W++   +    +S     D 
Sbjct: 416 RWVQTFANGHKGSLVGKNHYDVVPNLHER-----------WRQAHRAGLAGESISATSDP 464

Query: 392 WHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           W   +G T+ +     P       RGG I M +++T +  +        +     ++   
Sbjct: 465 WTSQDGHTIWLDWAIEPWLKPDGHRGGIILMCKDVTEERLIRDSLAESEERFKLAMEGSH 524

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +G+  +    +    +P+++ L   E++ LS          T  R     D      A+ 
Sbjct: 525 DGLWDWEITTQKVYFSPSWKRLLGYEDHELSNDF------GTWERLTAPDDLELAKKALS 578

Query: 505 TSFDDERK---SLQGTLELLSDSVLEYSIIPL-------PNAQTMLTFVNVTDSVRAE-- 552
            + D+  K     +  +   +   ++     L          + + T ++ T  +  E  
Sbjct: 579 DALDNPEKDSYEAEFCMAHKNGHWVQILAKALIVRDEHGKPTRVVGTHLDRTVQLELESR 638

Query: 553 -RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            R      +A + ++  K+ F+  +S+E+R+PL  I+GF  LL+         +Q+ Y+ 
Sbjct: 639 LRETAIAAKAEKDSNAEKSRFLATMSHEIRTPLNGIMGFARLLEMDLPAGELKEQAGYL- 697

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               SS  L  ++NDILD + +++G++KL  S  ++  LL    +          ++ ++
Sbjct: 698 --VQSSETLSAILNDILDFSKLESGMVKLVDSPFLMEQLLKGSTELPRLTCESKGVKFEL 755

Query: 672 ISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARDNGDFIFSVKNN 726
            +  G+   F  D  RL QI   +LSNA+ F+S G   + +     + +     F V + 
Sbjct: 756 NNKLGEHQIFSGDMGRLRQILQNLLSNAIKFTSHGKVSLTVSNTQISPNEDLITFEVSDT 815

Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT- 783
           G  IP++    +F  F         +  G GLGLSIV+S IN  GG + + S     T  
Sbjct: 816 GLGIPKEKQSLLFKPFSQVHTDRENRFGGTGLGLSIVKSLINAMGGEIQLESEPGQGTQV 875

Query: 784 -INCRI 788
             +  +
Sbjct: 876 MFSVTL 881


>gi|148262093|ref|YP_001228799.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146395593|gb|ABQ24226.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 758

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 165/368 (44%), Gaps = 23/368 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             + +  +      +  ++EGV V   D R+ L NPA ++++     R+  G  I  +  
Sbjct: 401 TAELSMEMGRLEAVLTCMAEGVVVTDKDNRVILFNPAAQNIFDLVPFRVV-GQPIEQV-- 457

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQTMLTFV 543
              R    +   D    I  S      S Q  +E+     L+ ++ P+ +   Q     +
Sbjct: 458 --CRVGEFTLLLDCIREIRESG-GPVASRQEEMEVKGKK-LKINLSPMADDAGQFAGVVM 513

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++ D    E           + D +K  F+  VS+EL++PLT++ G   LL  ++   L 
Sbjct: 514 SIRDITAEE-----------EVDRMKTDFISTVSHELKTPLTSMKGSLQLLL-NRGKWLT 561

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             + Q +     ++  L+ L+N+ILD++ +++G MK +Y  + + +L+    + I     
Sbjct: 562 DTERQLLSVCLRNTQRLIRLINEILDISKIESGGMKFDYKPLSMGELVVYAAEEIKGFAL 621

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             NI I       L     D  RL+Q+ + +LSNA+ FS +G  V++ A R+    + SV
Sbjct: 622 SRNISIVNSVGDHLPLIFGDHDRLIQVLTNLLSNAVKFSPEGKVVMVLAEREGNYLLVSV 681

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I     + +F +F    NA + Q+ G GLGL+I +  I  H G +  ++  EG 
Sbjct: 682 ADRGKVIQWADREKLFKKFQQLNNADQLQQGGTGLGLAICKEIIEKHHGRIYYNAGKEGG 741

Query: 782 TTINCRIP 789
                 +P
Sbjct: 742 NVFTFTVP 749



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 46/143 (32%), Gaps = 24/143 (16%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP---- 350
            ++   ++ ++     +L  +   + + D++  +   N +   ++++    +   P    
Sbjct: 398 TTRTAELSMEMGRLEAVLTCMAEGVVVTDKDNRVILFNPAAQNIFDLVPFRVVGQPIEQV 457

Query: 351 -SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               E    L    ++ E       ++    V               G+ L + ++    
Sbjct: 458 CRVGEFTLLLDCIREIRESGGPVASRQEEMEV--------------KGKKLKINLSPMAD 503

Query: 410 G-----GTIWMFENLTVQVDLET 427
                 G +    ++T + +++ 
Sbjct: 504 DAGQFAGVVMSIRDITAEEEVDR 526


>gi|268591889|ref|ZP_06126110.1| virulence sensor protein BvgS [Providencia rettgeri DSM 1131]
 gi|291312863|gb|EFE53316.1| virulence sensor protein BvgS [Providencia rettgeri DSM 1131]
          Length = 1205

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/383 (18%), Positives = 160/383 (41%), Gaps = 7/383 (1%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           ++   + ++   + +            +     + V    G I  SN A+ S +  +   
Sbjct: 554 YLHREIRLRKYTQKRLQEQAIFLETLYNGTPVPIYVIDKSGTIINSNSAWESFFSPDNEN 613

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +   +         + Y      +D    +++     +   +    ++    + Y     
Sbjct: 614 IKQLSLTSQQHPLSTIYQELHSLFDEPNRLVSPPKRYQIKNRMGERVIVHQAVAYRDNQG 673

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             +  + ++ ++T+  +    L+   +    A + K++F+  +S+E+R+ ++ IIG  +L
Sbjct: 674 NISGLICSWQDITEHEQLLIELSSARQRAEHASQTKSNFLAIMSHEIRTHISAIIGLLEL 733

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
             T+K    +   ++ ++    S+  L+ L+ DILD+A +++G ++L    +  N+L   
Sbjct: 734 AATNKNQQDD--ITESIQIPYESALSLMGLIGDILDMAKIESGKLELVPEWVKSNELATP 791

Query: 654 VKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILK 711
           V +       +  I +    +         D  RL Q+ S +L+NA+ F+S+G+  VI+ 
Sbjct: 792 VVRLFEGLAKQKGISLHYHLNAIHPDEIYIDVFRLRQVISNLLNNAIKFTSEGTIEVIIN 851

Query: 712 AARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
               N +       + + G  I E+  + +F+ +       + +G GLGL+I +  I++ 
Sbjct: 852 YLPQNHEENILRIIISDTGMGIEENRQELIFSPYTQAESSSKHKGTGLGLAICKQLISMM 911

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G +++ S     T     IP K
Sbjct: 912 NGTITLYSQLGHGTQFLIDIPVK 934


>gi|212634200|ref|YP_002310725.1| hybrid sensory histidine kinase BarA [Shewanella piezotolerans WP3]
 gi|212555684|gb|ACJ28138.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A:Hpt [Shewanella piezotolerans WP3]
          Length = 935

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/322 (24%), Positives = 136/322 (42%), Gaps = 16/322 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I  +    ++         L   +I   D  ++ +      LS+   E          
Sbjct: 214 QPITEMVRVVAKIREGKLDTRLTGNLIGELDLLKRGINAMAGSLSEYHDEMQQNIDQATS 273

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT
Sbjct: 274 DLRETLEQIEIQNVE--LDMAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT 331

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+S Q  Y+  I  S+T LL+++NDILD + ++AG M L      L +++ E   
Sbjct: 332 ----PLHSSQQDYIRTIERSATNLLSIINDILDFSKLEAGKMVLENMPFSLREVIEETVT 387

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +++   E  I + +  D ++      D  R  Q+ + ++ NA+ F+  GS V LK   +
Sbjct: 388 MLSSSAREKEIDLVIDVDPRIPEDVTGDAMRFSQVITNLVGNAVKFTDSGS-VQLKMQLE 446

Query: 716 N-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
                       + + G  I  D   S+F  F        RR  G GLGL I +  +N  
Sbjct: 447 EIADGSVHVRTEIIDTGIGIDADKLASLFQAFGQADSSISRRFGGTGLGLVITKRLVNRM 506

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG +  +S  +  +T    +P 
Sbjct: 507 GGQIGCNSEPQQGSTFWFSLPL 528


>gi|189423633|ref|YP_001950810.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419892|gb|ACD94290.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 743

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 10/256 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
               ++   ++   LT   +A   A+  K+ F+ ++S+ELR+P+  +IG   LL+ ++  
Sbjct: 338 VNHLMSQVRQSHHQLTAARDAAESANRTKSEFLANMSHELRTPMNGVIGTAQLLRMTE-- 395

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN++Q++Y+  I  S+  L+ L+NDILDL+ ++AG ++L      L +++  V  S++ 
Sbjct: 396 -LNAEQAEYLASIEHSADSLMALLNDILDLSRIEAGRLELENRPFGLQEVIGNVVDSLSA 454

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARD 715
           +     +++ V  D  L   V  D  R  QI   +  NA+ F+ +G+ ++      A  D
Sbjct: 455 QARLKWLQLSVEFDRNLPQLVLGDSLRFRQILLNLTGNAIKFTDQGAVLVTAALSSADED 514

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
           +      V++ G  I  +  + +F  F         +  G GLGL+I      L GG + 
Sbjct: 515 SVTLHLCVQDTGIGITAEAMQRIFAPFTQADSSNTRKYGGSGLGLTISRHLTGLMGGRLW 574

Query: 774 ISSSDEGVTTINCRIP 789
             S     TT +  +P
Sbjct: 575 AESEPGIGTTFHLELP 590


>gi|254458661|ref|ZP_05072085.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
 gi|207084427|gb|EDZ61715.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
          Length = 1088

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 14/302 (4%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           G+ L   I  +  +    L+   E  SD   E ++I L  A       ++ + + A+   
Sbjct: 334 GYFLSNEITRNIKNLEDVLKRVAEDTSDEDDETAVINLQTADGTAQAYDLLEKIIAQT-- 391

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E  E+ ++A E K+ F+ ++S+E+R+PL  I+GFT+LLK + LG    +Q ++VE I  
Sbjct: 392 REDKESAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTGLG---EEQHEFVEIIEK 448

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL ++N+ILDL+ +++  +++        D      +  A +  E +I +    D 
Sbjct: 449 SSENLLEIINNILDLSKIESNKLEIEDIVFNPIDEFESAVEVYAVRASEKHIDLGCFIDP 508

Query: 676 KL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGS 728
            L      D  ++ +I   +LSNA+ F+S   ++ +   R            F V+++G 
Sbjct: 509 TLEHPLKGDPTKIKEIIINLLSNAVKFTSSAGSINVDIRRVECDQDGKTRVRFEVQDSGI 568

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  +    +F  F         +  G GLGL+I   F+ L GG + + S     TT   
Sbjct: 569 GVTSEQKSRIFEAFSQADTSITRKYGGTGLGLTISSRFVELMGGELDLHSETGSGTTFFF 628

Query: 787 RI 788
            I
Sbjct: 629 TI 630


>gi|169830118|ref|YP_001700276.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
 gi|168994606|gb|ACA42146.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
          Length = 916

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 151/325 (46%), Gaps = 26/325 (8%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I    +     ++   + +  + +  +E +     L ++++ + E         +T   
Sbjct: 427 EIVRLLNESRAMTEELQVQSEELQTQSEELQMQTEELTMINEQLEE---------RTKEA 477

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +  +A++ L E  E L      K+ F+ ++S+ELR+PL +I+  +++L  +    
Sbjct: 478 ESKSRELEKAKQELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENSQDH 537

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +++++ + I +S   LL L+NDILDL+ V+AG + + ++ + ++++  +++ + A  
Sbjct: 538 LTDEETEFAKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNMSEVPVQIEHTFAPV 597

Query: 662 MHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------ 714
             + NI   +  +D  +  F  D +R  QI   +LSNA  F+  GS V L   +      
Sbjct: 598 AMKKNIDFHISKADHVVDVFYTDEKRFQQIIKNLLSNAFKFTEHGS-VTLAINQLAQSQL 656

Query: 715 -------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
                   +     +V + G  IP+D  + +F  F         +  G GLGLSI + F 
Sbjct: 657 TSNMQDISDDWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFA 716

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L GG +++ S +   ++    IPS
Sbjct: 717 KLLGGWITLQSEEGQGSSFTLTIPS 741


>gi|119774168|ref|YP_926908.1| hybrid sensory histidine kinase BarA [Shewanella amazonensis SB2B]
 gi|119766668|gb|ABL99238.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 941

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 110/535 (20%), Positives = 199/535 (37%), Gaps = 52/535 (9%)

Query: 275 KSYKIVRVLNSFGEAGI-AIDVSKEITVNDQLTHTYEIL--------HNLTVAIAIFDQN 325
           + Y +   L   G   I  + +S E +++       +IL          L  +IAIFD N
Sbjct: 39  RFYDLEDTLKDMGSNIIEPLAISAEQSLSTNNREITKILLARAQLNKSTLVKSIAIFDIN 98

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             L F    + + +E+            E LE L+   +   + +    +  IF++  S 
Sbjct: 99  NQL-FVTSHYHKDFEV--------MRYKEALESLKE-TQFEHEGDTLIVRTPIFAI-SSK 147

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           +   D     +G+    +V   P      +   +++ ++ E       +           
Sbjct: 148 QPMGDNIDEGSGRFSEAVV--MPDNSNAALLGYVSMMLNKEKALLEQHRAAVAAF----- 200

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + + G    +            T     +    I ++     +         L   +I 
Sbjct: 201 IIVLIGVQLNLLF----------TFRLVKNVTQPITDMVKLVGKIREGKLDARLEGNLIG 250

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             D   + +      LS+   E       +  T      +        AL    +  ++A
Sbjct: 251 ELDLLNRGINAMAASLSEYHDEMQQN--IDQATSDLRETLEQIEIQNIALDRAKKDAQEA 308

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
             IK+ F+ ++S+ELR+PL  +IGF   LLKT     L+S Q +Y++ I  S+T LL ++
Sbjct: 309 SRIKSEFLANMSHELRTPLNGVIGFARQLLKT----PLHSSQMEYIKTIERSATSLLQII 364

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           NDILD + ++A  M L      L   L +    +A   H   +   V  D  +      D
Sbjct: 365 NDILDFSKLEANKMVLETMPFGLRASLEDTINLLAGSAHAKGLEFVVDVDANVPENLSGD 424

Query: 684 RQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVF 739
             RL Q+ + +L NA+ F+ +GS    + L +  DN       V + G  I  +  + +F
Sbjct: 425 VMRLGQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLTLRCEVTDTGIGIDPEQQELLF 484

Query: 740 NRFVSNAH--RGQRRGVGLGLSIVESF-INLHGGHVSISSSDEGVTTINCRIPSK 791
             F         +  G GLGL I +   + + GG +   S     ++    +P +
Sbjct: 485 QAFGQADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFHSEVGKGSSFWFTVPLQ 539


>gi|323699591|ref|ZP_08111503.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459523|gb|EGB15388.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 434

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 169/396 (42%), Gaps = 35/396 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +L+++ + L +     +D +++ + V   D GRI   + A   L   + +RL  G    +
Sbjct: 39  ELKSRLDEL-EHFRALLDRVNDAIFVVDADSGRILDVSGAADVLLGCDADRLR-GLRFAD 96

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-QTMLT 541
           I     R + ++   +    +    +      QG   +  D  L  S++   N  Q ++ 
Sbjct: 97  ILPPHIRRHADNLFHNETKTVRMETEFSCPLCQGKPPVPVD--LTLSLVSFRNERQAIIV 154

Query: 542 FVNVTDSVRAERALTEKNEAL-----------RKADEIKNSFVQHVSYELRSPLTNIIGF 590
             ++++  R ERAL   ++ L            +A+  K+ F+  VS+ELR+PLT ++GF
Sbjct: 155 ARDISERKRNERALKRSHDQLELRVRERTRELDRANRAKSEFLSTVSHELRTPLTAVLGF 214

Query: 591 T---------------DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
                           + L    L        + +E I+     L  L+ND+LDLA ++A
Sbjct: 215 AKVTSRKLVNSIFPAVERLADPNLRKDMEVVRRNLEIIAGEGQRLTLLINDVLDLAKMEA 274

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             ++   + +     + +  +  +    + ++ +++  +  L     D  RL+Q+   ++
Sbjct: 275 HRVEYVMAPVSPEAFIRKSVEVTSALFEDTDLTLRLDLEPDLPLVNGDADRLMQVMVNLI 334

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
           SNA+ F+ +G  +   A   +G     V + G  I  ++ +++F  F         +  G
Sbjct: 335 SNAVKFTPQG-VITCAAHVVDGTVRVGVTDTGVGIRPELLQAIFEEFTQVGEHLSDRPAG 393

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I +  +  HGGH+   S     +T    +P
Sbjct: 394 TGLGLTICKHIVEGHGGHIWAESRPGHGSTFLFTLP 429



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 19/162 (11%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYK-----KNTETEGIVFQKAI 237
           + K   + +  F+ L D ++  ++  D   G IL  + +             G+ F   +
Sbjct: 39  ELKSRLDELEHFRALLDRVNDAIFVVDADSGRILDVSGAADVLLGCDADRLRGLRFADIL 98

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETV-----STLEHGNNKSYKIVRVLNSFGEAGIA 292
               +   + +      +  +E  F   +              +  +V   N      +A
Sbjct: 99  PPHIRRHADNLFHNETKTVRMETEFSCPLCQGKPPVPVD---LTLSLVSFRNERQAIIVA 155

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
            D+S+       L  +++ L      + + ++ R L   NR+
Sbjct: 156 RDISERKRNERALKRSHDQLE-----LRVRERTRELDRANRA 192


>gi|310827230|ref|YP_003959587.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
 gi|308738964|gb|ADO36624.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
          Length = 585

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 160/386 (41%), Gaps = 26/386 (6%)

Query: 410 GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G  +     +  Q+D   +K N         +  +++G+     D +I L N   R ++ 
Sbjct: 217 GDLVDSLNTMAEQLDASFSKINRKNIELSSVLSSMNQGIIAVDRDNKIILINDTARGIFN 276

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +  +   G +I  +       Y +   ++L   +  + +D R   +  +E   + + + 
Sbjct: 277 IDLKKEIKGKNILEV-------YRDPFVYELQDKLAET-EDGRLDYETRIE---ERIYKV 325

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +   + +        N+         + E    ++  + I+  FV +VS+EL++P+T I 
Sbjct: 326 TSSQMLDKGDQTYNGNII--------ILEDITMIKGLENIRRDFVANVSHELKTPITTIR 377

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM--KLNYSTIV 646
           GF + ++ + +    +   ++   I+  S  L  LVNDIL L+ ++      +     I 
Sbjct: 378 GFIETIQENHITD-EATLGRFYSIIADESERLTRLVNDILILSHLENNQRSGEDKREVIG 436

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +N  +  +   +        I ++   +G + S + +     Q+   ++ NA+ ++ +G 
Sbjct: 437 VNQEILRIFDILKMTAESKRIELRYQKEGDI-SVIINPDDFRQMMINLVDNAIKYTDEGG 495

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            V +    +   F   V++ G  IPE+    +F RF        +   G GLGL+IV+  
Sbjct: 496 RVDVSVYENGAHFCILVEDTGCGIPEEDIPRIFERFYRVDKSRSKENGGTGLGLAIVKHI 555

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           +  + G + ++SS    TT    +P 
Sbjct: 556 VQNNKGTIEVTSSVGIGTTFKVTLPK 581


>gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
 gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
          Length = 1386

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/511 (18%), Positives = 192/511 (37%), Gaps = 30/511 (5%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            S+   +N        +L  + + + I D  R ++        +  +  + +   P  D  
Sbjct: 720  SRNQELNLANGDLVNLLDTVDIPVIILDLERRIRRFTPKARSIMNVLPSDVG-RPLEDIT 778

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRG 410
            L            ++       +  V K++   +       G    + +       N   
Sbjct: 779  L-----------NVSVPDLGAQVAEVMKTARVREFEVQNWTGHWFRMHLRPYKTPENRID 827

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            G I    ++       ++           ++ +   + V     R+  +N AF   +   
Sbjct: 828  GAILSLVDIDALKHQVSQVEWARDDATGIVEAVQVPLVVLDGRMRLLSANKAFYQAYPAS 887

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAA--IITSFDDERKSLQ---GTLELLSDSV 525
                   +               +    + A    +   + E          + L + SV
Sbjct: 888  AAETVAKSLFELSGGAWDVPELRAALGQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSV 947

Query: 526  LEYSIIP-LPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRS 582
               + +P L  A   +T     +  RAE      +  E   +A+  K+ F+  +S+ELR+
Sbjct: 948  HSRTGLPMLLLAIEDITERKQRELERAELLAHAQQAKEEAERANRAKDQFLATLSHELRT 1007

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL+ ++    LL+   +   ++K  +  E I  S+ + + L++D+LD++ +  G +++ +
Sbjct: 1008 PLSTMLMQAQLLRRGTMD--DAKIKRASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEF 1065

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             T+ L  ++    +S++ +    +I  +   D  LG    D  RL QI   +L+NA+ FS
Sbjct: 1066 QTVHLPGVVQAALESVSAQAERKSILFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFS 1125

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
            ++G  V +   R  G     V + G+ I  +  + +F+RF+       R   G+GLGL+I
Sbjct: 1126 AEGQRVSVVLERMEGSARLQVSDRGAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAI 1185

Query: 761  VESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            V   + LHGG V   S            +P 
Sbjct: 1186 VRHLVELHGGTVQAESPGKGQGAIFTVILPL 1216


>gi|329848921|ref|ZP_08263949.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328843984|gb|EGF93553.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 639

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 194/476 (40%), Gaps = 32/476 (6%)

Query: 325 NRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
           +  +   N S   L+       +  + S     + L     +  ++  +  +   F   +
Sbjct: 32  DGIVTAWNASATRLFGYTPEEAIGQHISLIIPKDRLDEEFVIIGKVK-EGQRLEHFETVR 90

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             +         NG+T+ + +T +P     G I     +   + +  +   L       +
Sbjct: 91  QGQ---------NGRTIDISLTVSPIKDAKGRIVGVSKIARDISIAKRAERLAASLNAIV 141

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D   + +     DG I   NP+   ++    +  + G HI  I          +    + 
Sbjct: 142 DASDDAIVSKTLDGVITSWNPSAVRIFGYTPDE-AIGQHIGLIIPPDRIDEEYTILGKIG 200

Query: 501 AAI-ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           A   +  F+  R+   G+   L+      ++ PL + +  +          AE    +  
Sbjct: 201 AGQKVDHFETLRRHKDGSFVELA-----VTVSPLLDGRGRVMGATKVARPIAEA--KQTE 253

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            ALR+++  K+ F+ ++S+ELR+P+  +IG   +L  S+  +LN K+ Q V  +  S   
Sbjct: 254 RALRESNRRKDEFLANMSHELRTPMNAVIGLAHILGMSE--NLNPKEQQCVAMLKQSGDN 311

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-G 678
           LL L+N++LD + +++  ++L        D++      I  K  E ++ I+V  D  +  
Sbjct: 312 LLGLINNLLDFSRLESDALELEVLEFNPADVVENSMIMIQLKAQEKDLPIRVTYDRNIKD 371

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDM 734
            ++ D  RL QI + +L+NA+ F+ +G     V +KA R N   + F V + G  I  D 
Sbjct: 372 RYLGDPARLQQILTNLLANAVKFTDEGQIDVAVRIKAERLNDTVLAFDVTDTGIGIAADK 431

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F+ F         +  G GLGLSI  +      G +S+ S     +T    +
Sbjct: 432 AEMIFDTFTQADASMTRKYGGSGLGLSICRALARAMNGSISVVSRPGIGSTFTVEL 487


>gi|194366813|ref|YP_002029423.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
 gi|194349617|gb|ACF52740.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
          Length = 1175

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 160/391 (40%), Gaps = 30/391 (7%)

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---------SNPAFRSLWKT 469
            +  +V++  +   ++ +  +T   +++G      D RI           SN     L   
Sbjct: 654  VIERVEV-RRNEQVLDLTHDTPLQIADG----DRDLRIVARLLSFADSASNTYRYRLAGY 708

Query: 470  EENRLSPGTHIRNIAATCS----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            + + +  G     + +       R   ++   D   + + S   E +        LS  +
Sbjct: 709  DPDWVEVGPAGERLFSRLPPGSYRLEVQARSADHVWSRVQSL--EFRVQPPWWRSLSGLL 766

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            +  SI  L  +     +        A +    K E   +A   K  F+ ++ +E+R+P+T
Sbjct: 767  VLASIALLLTSWFAWLYRRRLQRRHAYQLALHKQELAEQASAAKTRFLANLGHEIRTPMT 826

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             ++G ++LL  S    L+ +Q  Y + I  +   LL+LVND LDLA +++G ++L     
Sbjct: 827  GVLGMSELLLAS---PLDPQQRGYTQSIRHAGEHLLHLVNDALDLARIESGRLELQSKPF 883

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
             L+ LL ++   +     +  +R  + +    G     D  R+ QI   +LSNA+ F+S+
Sbjct: 884  ALSRLLQDLAALMGPLAAQKGLRFTLDNQLPPGLQATGDAMRVRQILLNLLSNAVKFTSR 943

Query: 705  GSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLS 759
            G T+ L A  D       F V++ G  I ++  + +F RF          Q  G GLGL+
Sbjct: 944  G-TITLHARSDGELRALHFEVRDTGPGISQEQQQRLFRRFEQADGARTAAQYGGSGLGLA 1002

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            I         G + + S     T     +P 
Sbjct: 1003 ICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1033


>gi|168213918|ref|ZP_02639543.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170714587|gb|EDT26769.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 623

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/507 (18%), Positives = 205/507 (40%), Gaps = 31/507 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           EI +  +       L +LT  +   D +      N++F     I+  ++      D   +
Sbjct: 103 EINLKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKVGIEKKYIIGKTDKDIFFD 162

Query: 358 FLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRG 410
                   P ++    KT +E I S  K     +  +   +G     + +      N   
Sbjct: 163 -------DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVK 215

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I +  +++ +  +E +     K+  E +++L + V +     +    N AF  L+   
Sbjct: 216 GIIGLTRDISYKKAIEYRLKKNDKMFFEVLNYLDD-VVIIKEGEKTIYVNHAFEKLYGLN 274

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L        +     R + E D +        +F  E+  +      + + +   + 
Sbjct: 275 CKELYKEKS---MIVKLDRIHPE-DRYKFINIDFGNFFMEKARIVRADNEVRNVLFRANS 330

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           I   N +++   + + D       +T+  E   + ++++  F  ++S+E ++P+  I   
Sbjct: 331 IKNENGESIRRIIVIND-------ITDTIEKSNEMEKLRMEFFANISHEFKTPVNLIYSA 383

Query: 591 TDLLKTSKLGSLNSKQSQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             LL+     +++  ++ Y+ YI     +   LL L+N+++D   ++AG   +N     +
Sbjct: 384 LQLLELKLKNNIDRDENSYINYIKMAKQNVFRLLKLINNLIDSTKLEAGFFNVNIKNHDI 443

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              + ++  SI     +N I I   ++ +      D   L +I   ILSNA+ F+ +   
Sbjct: 444 VSCVEDITMSICGFAEKNKISITFDTEEEEKIIAFDLNHLERILLNILSNAIKFNRENGN 503

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           + +  + D      S+K+ G  IP+D    +F+RF    +R  +   G G+GL I +  +
Sbjct: 504 IDVYMSFDERYVNISIKDTGIGIPKDKIDLLFHRFKKINNRLTKVNEGSGIGLFIAKELV 563

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            ++GG + ++S     T    ++P K+
Sbjct: 564 KINGGEMRVNSELGEGTEFIIKLPIKK 590



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 101/282 (35%), Gaps = 42/282 (14%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L     +  +  DSL   V+ +D  G  +  N +++      GI  +  IG++ K    +
Sbjct: 106 LKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKV---GIEKKYIIGKTDKDIFFD 162

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------------GEAGIAI 293
              ++ +    ++    +     +G    ++                      G  G+  
Sbjct: 163 DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVKGIIGLTR 222

Query: 294 DVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+S +  +  +L       +E+L+ L   + I  +     + N +F +L+ ++   L   
Sbjct: 223 DISYKKAIEYRLKKNDKMFFEVLNYLDD-VVIIKEGEKTIYVNHAFEKLYGLNCKELYKE 281

Query: 350 PSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLP------NGQTLHV 402
            S    L+ +   ++     +++  +      + ++    ++           NG+++  
Sbjct: 282 KSMIVKLDRIHPEDRYKFINIDFGNFFMEKARIVRADNEVRNVLFRANSIKNENGESIR- 340

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                     I +  ++T  ++   K N + K++ E   ++S
Sbjct: 341 ---------RIIVINDITDTIE---KSNEMEKLRMEFFANIS 370


>gi|187933989|ref|YP_001885394.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722142|gb|ACD23363.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B]
          Length = 562

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 162/401 (40%), Gaps = 33/401 (8%)

Query: 391 TWHLPNGQT-LHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGV 447
           T  + NG   +   + S    G +   F N+  Q+ ++       + +    +  +  GV
Sbjct: 189 THKMANGDYKIRAKINSKDELGNLGESFNNMADQLQMKMHEIVDKQTRIESILRSMESGV 248

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                +  +   NP    ++  ++N L       +I    S Y       + F       
Sbjct: 249 IAVDNNNIVIAINPYAERIFGIKKNILG-----ESIIEYVSDY-----DINTFLEEDYEI 298

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           D E K L   +E          I  +     ++T  ++TD  + E               
Sbjct: 299 DKEIKILH-PIERDLKIKKSNIINGIEMIGKVITIQDITDIKKLEL-------------- 343

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           ++  FV +VS+EL++PLT+I GF + L+       N  + +++  I   S  L  L+NDI
Sbjct: 344 MRTQFVANVSHELKTPLTSIKGFAETLR---YVEDNETREKFLNIIDKESERLSRLINDI 400

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L L+++++  +       +   ++ +V   +    +   I ++   D      + D+ + 
Sbjct: 401 LVLSSIESN-ISTQNDEFLPKSIIEDVINMVRKLANNKAINLEF-YDDNQELILGDKDKF 458

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   ++ NA+ +S  GS V + +    G++   + +NG  IP++    +F RF     
Sbjct: 459 YQLTLNLVENAIKYSENGSNVKVISYSKQGNYYLEISDNGLGIPKEDLPRIFERFYRVDK 518

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             ++ G GLGL+IV+  +    G +++ S     +    RI
Sbjct: 519 SRKKGGTGLGLAIVKHIVKTFNGDINVKSILGEGSIFKVRI 559


>gi|229082672|ref|ZP_04215130.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
 gi|229181711|ref|ZP_04309034.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228601744|gb|EEK59242.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228700638|gb|EEL53166.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
          Length = 588

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 306

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 307 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 366

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 367 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 426 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 484

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 485 ALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 947

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 13/251 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +    E  L +  +A   A   K+ F+ ++S+ELR+P+T ++G  DL   S     + +
Sbjct: 548 MERKTTEENLQQAKQAAEAASRTKSQFLANMSHELRTPMTGVLGMLDLALQS---PSDLE 604

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           +S Y+     S   LL ++NDILDL+ V+AG   L+     L   + E     A +    
Sbjct: 605 RSDYIRTAYRSGRSLLQILNDILDLSKVEAGKYSLDLKPFSLKSCVAEAVDIAAPEAKRK 664

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------ 718
            I +++     L +    D+ RL Q+ + ++ NA+ F+ +G  V ++    +        
Sbjct: 665 GIELELDLAQDLPARVAGDQVRLRQVLTNLVGNAVKFTERG-RVTVQVEVADKTPEGESL 723

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F V + G  IP+D    +F  F    +++     G GLGL+I +  +   GG +   S
Sbjct: 724 LRFRVSDTGIGIPQDKRHLLFQAFSQIDDSNTRNYGGTGLGLAISKEIVQRMGGEIGFES 783

Query: 777 SDEGVTTINCR 787
            +   +T    
Sbjct: 784 GEGVGSTFTFT 794


>gi|186681682|ref|YP_001864878.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464134|gb|ACC79935.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 909

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 127/307 (41%), Gaps = 19/307 (6%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAE--RALTEK 558
           I+       + LQ     + D  LEY   I      Q +    N      AE  R+L  K
Sbjct: 202 ILLPVIRSIQKLQQGAAKIGDGNLEYRLNIQTEDEIQELAEAFNRMAGTLAESYRSLELK 261

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E    A+  K+ F+ ++S+ELR+PL  I+G+  +L+  K  +L  KQ   +  I    +
Sbjct: 262 KELADTANRAKSEFLANMSHELRTPLNGILGYAQILQRDK--TLTDKQQDGLRIIHQCGS 319

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+NDILDL+ ++A  M+L  S       L  V +    +  +  I        +L 
Sbjct: 320 HLLTLINDILDLSKIEAQRMELYKSDFHFPAFLQSVVEICRIRADQKGISFIYQPTSELP 379

Query: 679 S-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----------GDFIFSVKNN 726
               AD +RL Q+   +L NA+ F+ KG      ++ D                F + + 
Sbjct: 380 IGVWADEKRLRQVLINLLGNAIKFTEKGGVRFTISSVDQLLTNESNQKPIHKIRFQIIDT 439

Query: 727 GSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  + ++    +F  F      + Q  G GLGL+I +  + L    + + S     +T  
Sbjct: 440 GIGMSQEQVAKIFLPFEQVGEVKKQSEGTGLGLAISQRIVQLMDSTIQVKSEIGQGSTFW 499

Query: 786 CRIPSKE 792
             +  +E
Sbjct: 500 IDLDLQE 506


>gi|218440934|ref|YP_002379263.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173662|gb|ACK72395.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1013

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 17/293 (5%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RKS +   E + +  L +    L  A+ +   + +     ++ AL +  +    A++ K+
Sbjct: 473 RKSFELWKETVHNQSLPWKSSELEAAEALRNTLMLAVLEFSQTALFKAAQQAEAANQAKS 532

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  I+GF DLLK         +   YV+ ISAS   LL L+NDILDL
Sbjct: 533 EFLANMSHEIRTPMNAILGFCDLLKDRI---TEPQTRGYVDLISASGKTLLELINDILDL 589

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + ++AG ++LN+  + L +L+ E++Q    K  + N+ + V     +  + + D  RL Q
Sbjct: 590 SKIEAGKLELNFEPLYLRELIQEIQQIFFQKALKKNLSLLVEIQENVPNTILFDEIRLRQ 649

Query: 690 IFSKILSNAMDFSSKGST-VILKAARDNG----------DFIFSVKNNGSSIPEDMCKSV 738
           I   ++ NA+ F+ +G   + + A  ++           + I SV+++G  I +D    +
Sbjct: 650 ILFNVVGNALKFTEQGYVKISVDAQTNDDNCESNQTNTINLILSVEDSGIGIAQDQQIRI 709

Query: 739 FNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ F         +  G GLGL+I      +  G + + S     T      P
Sbjct: 710 FDAFKQTEGQSTRKYGGTGLGLAITRRLTEMLEGKIDLQSEVGKGTIFKFIFP 762


>gi|182413629|ref|YP_001818695.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177840843|gb|ACB75095.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1085

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 135/832 (16%), Positives = 265/832 (31%), Gaps = 74/832 (8%)

Query: 25  AVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNET---YSFLSEICDQLSKYHSLLTENNC 81
                 AG  L       LL R R     +       ++ L E+  Q ++  + L E+  
Sbjct: 107 VGMAAFAGCCLGIAGLAALLHRSRRRRDAQHRALETAHAQLEELERQHARAEARLRESEE 166

Query: 82  L--TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFEN----WLKFHHYIKLSKATEKLR 135
                         E    L      PQ      +        L      +L +  +++ 
Sbjct: 167 RFRLTAASDGITLYEQDANLRYVWLYPQHAEHGAALGRTDGELLPNAEGERLMQRKQEVL 226

Query: 136 KEGQSFDLVAETQ--NDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
            +G S  +    Q                 A  RI+ + G   ++ +   + +       
Sbjct: 227 TQGTSCRVEVRAQLPAGTKYYDTFIAPRRDASGRIVGVAGTALDVTDRRQREQSRQ---- 282

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKN---TETEGIVFQKAIGESRKLFKEEIKK 250
           +   + +S +  +   D  G I   N    +    T  E I     +   R+ F EE + 
Sbjct: 283 LLAAIVESSEDAIIALDLEGTITSWNQGSTRLFGYTAAETIGHSVTMLIPRERFHEEPQI 342

Query: 251 RMISSSALEKNFCETVSTLEHGNNK--SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
                +       ET    + G     S  +  + +  GE   A  +++++T+ ++    
Sbjct: 343 LERIRAGERIEHYETRRRRKDGTELEISLSVSPLRDDRGEIVGASKIARDVTLRNRTERN 402

Query: 309 YEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLR-SANKL 365
              +  L   +A  DQ +  +Q  +R   +     D  F   +      L          
Sbjct: 403 RRFIAMLNERLASSDQPDEIVQTASRLVAQFLGAQDCCFSEWHDETGAALVHYEWGEPGR 462

Query: 366 PEQLNWKTWKENIFSVYKSSETHKD-----TWHLPN------------------GQTLH- 401
           P         E   + ++    H+      T   P+                  G T   
Sbjct: 463 PAGTGVHRLCEFAPAEWRRQFPHEFRIADITREAPDAALVGKCQAAGVGSFATAGVTRKA 522

Query: 402 ------VIVTSNPR----------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                 ++ +  PR             +     L  +   ET   T  +      DH   
Sbjct: 523 PWIASIIVASQQPRTWRDDEMRLLKAVVARVWPLVERARSETALRTSEEQLRLITDHAPV 582

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            +A    + R+K  N  +   +  E + L  G  ++ +    +    +      FA    
Sbjct: 583 SLAQVDRERRLKFVNQTYARRFGREPHDL-IGQPLKEVVGATAYARIQPHLDGAFAGRHV 641

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            F+ E     G    +       +         ++   ++T    AER +    +    A
Sbjct: 642 EFETEIALPVGGTRWVHAVHTPETAPDGTVIGVIVLITDITARKEAERQVALARDQALAA 701

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K+ F+  +S+ELR+PL  ++        ++  +L ++  +    I  +  +   L++
Sbjct: 702 ARAKDDFLAALSHELRTPLNPVLLIAS--DAAENPALAAEVRRDFATIRKNVELEARLID 759

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD+  +  G + L+   +    +L +    I     +  I +         +   D  
Sbjct: 760 DLLDVTRITHGKLPLDLRPVSAEQILQDALSVIRPDAEQKRITLVTELTAHRTTVRGDAV 819

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           RL Q+F  +L NA+ F+  G  + + +A  R       +V++NG  +       VF+ F 
Sbjct: 820 RLQQVFWNVLKNAVKFTPAGGRITVTSANLRGGDTLRVAVRDNGIGMTPAEIARVFDAFT 879

Query: 744 SNAH-----RGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
              H       +  G+GLGL+I    +  H G +   S+      T    +P
Sbjct: 880 QGDHAVGSNSHRFGGLGLGLTISRLLVEQHHGDIRAESAGPGQGATFTIELP 931


>gi|108763603|ref|YP_632616.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108467483|gb|ABF92668.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 1109

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 174/393 (44%), Gaps = 28/393 (7%)

Query: 406 SNPRGGTIWMFENLTVQV--DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           S   G  + +  N T      L +            ++ +++GV +      I + NPA 
Sbjct: 279 SEDDGVLLDVLANQTADAIQSLRSAEEEARHRMERMVESMADGVVLTDEKNDIVVMNPAA 338

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R L    E          N     +R   E  G+  F  +        + L+  ++L  D
Sbjct: 339 RRLLHAGE----------NPEEQTTRLMEERLGFQPFHLVRGWEYGGGQVLREEVKLF-D 387

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             ++ ++ P+ +A+  L  V V      E+          + +E K+ FV  VS+ELR+P
Sbjct: 388 RHVQTTVTPVTDARNTLRGVCVVLRDITEQK---------RLEERKDEFVSMVSHELRTP 438

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT+I G  DL+     G +N +Q +Y+     S+  L  +V+D+LDL+    G +++N+ 
Sbjct: 439 LTSISGALDLVLNFMAGDINERQRRYLSLARDSTEKLNAIVDDLLDLSKFAKGRLRMNFE 498

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              L++L+  V +       E  + +K +        +AD  RL Q+ + +L+NA+ F+ 
Sbjct: 499 VSYLDELVQRVVEKYGPAFGEKRVLVKPVLPRHPLRVLADPNRLDQVLNNLLNNAVKFTP 558

Query: 704 KGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           +G  V ++    +   G  + S  N+G  I E+  + +F+RF     +  R  RG GLGL
Sbjct: 559 EGGEVRVEIHATSSLPGYVVVSCWNSGDPISEESLERIFDRFEQARTKANRTVRGTGLGL 618

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I  + +  HGG +      +GV      +P++
Sbjct: 619 AICRNIVEAHGGRIWCEPCTDGV-RFMVVLPTE 650



 Score = 46.5 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 49/158 (31%), Gaps = 13/158 (8%)

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           ++ VL +     I    S E     ++     ++ ++   + + D+   +   N +   L
Sbjct: 285 LLDVLANQTADAIQSLRSAEEEARHRMER---MVESMADGVVLTDEKNDIVVMNPAARRL 341

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNG 397
                  L    + +E    L       +  +  + W+     V +      D       
Sbjct: 342 -------LHAGENPEEQTTRLMEERLGFQPFHLVRGWEYGGGQVLREEVKLFDRHVQT-- 392

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
               V    N   G   +  ++T Q  LE + +  V +
Sbjct: 393 TVTPVTDARNTLRGVCVVLRDITEQKRLEERKDEFVSM 430


>gi|168703335|ref|ZP_02735612.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
            2246]
          Length = 1244

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 133/783 (16%), Positives = 256/783 (32%), Gaps = 70/783 (8%)

Query: 46   RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIG-QLHQRID 104
            R   +LA+ V    +  + +      Y  L   N     +W    ET   +         
Sbjct: 344  RLAVTLARDVTAQVAARAALRASEESYRLLFECNP--LPMWVYHTETLAFLAVNPAAVAK 401

Query: 105  IPQTDTDLLSFENW--LKFHHYIKLSKATEKL----------RKEGQSFDLVAETQNDCA 152
               T  + L+             +L  A              R   +S DL+        
Sbjct: 402  YGYTADEFLAMTLRDIRPAEDAARLPGAVAAAGGKLSDSGVWRHRLKSGDLIQARIYSHP 461

Query: 153  IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-Q 211
            ++  GR +      R++    + ++LA        L       +   ++    +W  D  
Sbjct: 462  LEFRGRPA------RLVMAQDVTAQLA----AEHALRESEEQLRRTLEASATGLWSWDLT 511

Query: 212  AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN----FCETVS 267
             G I W +     +    G     A G  R L  E+ ++   ++           CE   
Sbjct: 512  GGTIAWQSDQVPASFHPGGAFDGTAHGVDRVLHPEDRERVWAAARRAVAARDLFECEFRV 571

Query: 268  TLEHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TV 317
               +G  +                    G   DV+   T   +L  T  +L  L      
Sbjct: 572  VFPNGGGRWVAARGRAAYADDGRPVRMLGTITDVTARKTAELELQRTRAVLQKLVDHSPA 631

Query: 318  AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
             I +   +      N        +  A +      +            P  L  K  + +
Sbjct: 632  LIFMTGADGRYLLFNPRCEAALGVRAADVLGRTPAEAF----------PAPLARKIAERD 681

Query: 378  IFSVYKS-SETHKDTWHLPNGQTLHVIVT---SNPRGGTIWM---FENLTVQVDLETKYN 430
              ++     +  ++T   P+G T    V    S P G  I +     ++T +   E    
Sbjct: 682  GHALSTGVPQVSEETVRTPDGPTHFSTVRFPVSGPDGRVIALGGVAIDITARRRAEDDLR 741

Query: 431  TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
               ++     D     + V   DGR + +N  +R       ++         +      +
Sbjct: 742  AREELFRLLADESPHIIWVSDRDGRPEYTNARWREYSGRTADQAREQGWAGAVHPDDREH 801

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
            Y  S                 K   G               P+        +      + 
Sbjct: 802  YRRSWREARARGGEHEAQVRLKRADGVY-----RWFLARAKPVGGPGGTRRWFGAATDIE 856

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             ++    +  +L +AD  K++F+  +++ELR+PL  I     LL +  L   + +  +  
Sbjct: 857  EQKQ---REASLLRADVQKDAFLATLAHELRNPLAPIADVAHLLGSGGLD--DGRLREAG 911

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              ++    +L  LV+D+ DL+ V  G ++L    + L D++    ++ A  +     R+ 
Sbjct: 912  ALLAGQVRLLTRLVDDLTDLSRVRRGAVELRCEPVALADVIRTAVETSAPHIRAAGHRLS 971

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            +    +      D  RL Q+ S +L+NA  ++  G  V L   RD  + +  V+++G+ I
Sbjct: 972  LERRSEPVIVRGDAVRLAQVVSNLLTNAAKYTPPGGNVWLALDRDGTEAVVRVRDDGAGI 1031

Query: 731  PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCR 787
               +   VF+ FV      ++   G+G+GL++ +  + LHGG +   S+          R
Sbjct: 1032 DPALLPRVFDMFVQERRLQEQAPGGLGVGLTLAQQIVELHGGAIDARSAGPGRGAEFVIR 1091

Query: 788  IPS 790
            +P 
Sbjct: 1092 LPL 1094



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 137/467 (29%), Gaps = 59/467 (12%)

Query: 143 LVAETQNDCAIKI---EGRVSGSCAFLRILSLDG-----IYSELAETTLKCKKLSNHISV 194
           L        ++++   EGRV  +       +        +  +L +     +      + 
Sbjct: 52  LRRRGPAGQSVEVPGSEGRVYAARRVTWSAASGPPGAVVVVRDLTDQKRAQQAADRTTAY 111

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA-------------IGESR 241
            +   D L   V   D AG++L  N +  +    E +   +              +G   
Sbjct: 112 LRAALDRLADGVVVSDAAGNLLDLNPAAVRMHGYERVEQARRNLAALRDTFVLAPVGGPP 171

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS-YKIVRVLNSFGEAGIAI----DVS 296
             F E    R++    +         T         Y   RV    G   + +    DV+
Sbjct: 172 LRFDEWPLSRLLRGEDVGVCELTVRRTDVPVERVVQYSGTRVPGPAGGTELVVVTSHDVT 231

Query: 297 KEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
                 D+L  + +       +   A  + D    +   NR  +     + A L      
Sbjct: 232 DRRRAEDELRASEQRFRAFADHAADAFFLHDDRGTVLDVNRQALASLGCERAELVGLSPL 291

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RG 410
                     +  P+QL   + + N          H+ T    +G+   V +   P   G
Sbjct: 292 ------AFDPDLTPQQLANNSERLNAGETIACETRHRHT----SGRVFPVELRIRPFTAG 341

Query: 411 GT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSL 466
           G    + +  ++T QV          +      +     + V+  +       NPA  + 
Sbjct: 342 GRRLAVTLARDVTAQVAARAALRASEESYRLLFECNPLPMWVYHTETLAFLAVNPAAVAK 401

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +    +          +A T        D   L  A+  +      S      L S  ++
Sbjct: 402 YGYTADEF--------LAMTLRDIRPAEDAARLPGAVAAAGGKLSDSGVWRHRLKSGDLI 453

Query: 527 EYSIIPLP-----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           +  I   P         ++   +VT  + AE AL E  E LR+  E 
Sbjct: 454 QARIYSHPLEFRGRPARLVMAQDVTAQLAAEHALRESEEQLRRTLEA 500



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 95/297 (31%), Gaps = 32/297 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN--TETEGIVFQ 234
           ++ +      +L      F+   D      +  D  G +L  N     +   E   +V  
Sbjct: 229 DVTDRRRAEDELRASEQRFRAFADHAADAFFLHDDRGTVLDVNRQALASLGCERAELVGL 288

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG---- 290
             +     L  +++       +A E   CET      G  + + +   +  F   G    
Sbjct: 289 SPLAFDPDLTPQQLANNSERLNAGETIACETRHRHTSG--RVFPVELRIRPFTAGGRRLA 346

Query: 291 --IAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQF--HNRSFVELWEID 342
             +A DV+ ++     L  + E    L     + + ++     L F   N + V  +   
Sbjct: 347 VTLARDVTAQVAARAALRASEESYRLLFECNPLPMWVYHTET-LAFLAVNPAAVAKYGYT 405

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
                     D  +     A +LP  +     K +   V++          L +G  +  
Sbjct: 406 ADEFLAMTLRD--IRPAEDAARLPGAVAAAGGKLSDSGVWR--------HRLKSGDLIQA 455

Query: 403 IVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            + S+P         + M +++T Q+  E       +    T++  + G+  +   G
Sbjct: 456 RIYSHPLEFRGRPARLVMAQDVTAQLAAEHALRESEEQLRRTLEASATGLWSWDLTG 512



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 76/282 (26%), Gaps = 25/282 (8%)

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            D++   V+  D    +L+AN   +          +    E+       +   +      
Sbjct: 1   MDAVADAVFVLDHRERVLFANA--EAAALAGPPAAELVGREANACLPAGLADWLRRRGPA 58

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVL-----NSFGEAGIAIDVSKEITVNDQLTHT----Y 309
            ++       +     + Y   RV         G   +  D++ +         T     
Sbjct: 59  GQSVE-----VPGSEGRVYAARRVTWSAASGPPGAVVVVRDLTDQKRAQQAADRTTAYLR 113

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
             L  L   + + D    L   N + V +   +        +   L +    A      L
Sbjct: 114 AALDRLADGVVVSDAAGNLLDLNPAAVRMHGYERVE-QARRNLAALRDTFVLAPVGGPPL 172

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI-----VTSNPRGGT---IWMFENLTV 421
            +  W  +     +     + T    +     V+         P GGT   +    ++T 
Sbjct: 173 RFDEWPLSRLLRGEDVGVCELTVRRTDVPVERVVQYSGTRVPGPAGGTELVVVTSHDVTD 232

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           +   E +     +      DH ++   +    G +   N   
Sbjct: 233 RRRAEDELRASEQRFRAFADHAADAFFLHDDRGTVLDVNRQA 274


>gi|296423107|ref|XP_002841097.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637330|emb|CAZ85288.1| unnamed protein product [Tuber melanosporum]
          Length = 1260

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 102/653 (15%), Positives = 225/653 (34%), Gaps = 103/653 (15%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            + D+++  V+     G I  AN + +    T+         E+ +L     +  + +  
Sbjct: 328 AVLDAMEIPVFAMWHDGSIGMANRAARDLQPTDRSS------ENAELGTFASRYNIWTED 381

Query: 257 ALEKNFCETVSTL------------------EHGNNKSYK-----IVRVLNSFGEAGIA- 292
              +   + V  +                    G+   +      I         AG+  
Sbjct: 382 FSRRLTEDEVPIVRLLKSKKVLAPQRVGTFSATGDKIVFDTCGEGIYDDETGEFIAGLVW 441

Query: 293 -IDVSKEIT-----VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
             D+++                  +  ++   I     + Y  ++++ + +   +     
Sbjct: 442 LRDITEYEEKLVTQQETNELRFMTMCDSMPQLIWTTLPDGYHDYYSKRWYDYTGLTKEE- 500

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-T 405
           +    +  +         + ++          ++V          W    G+ L +    
Sbjct: 501 SLGMVDKSIGCHQEDMELVSKEWQHSLATGQDYTVEYRCRRRDGVWRWMLGRALPLRDPK 560

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S           ++   V+             E + H    +        I L       
Sbjct: 561 SKQIIKWYGTCTDIHDLVEARETARRTRAQLREVLQHSQITLWAIDRSNHITLL-EGGAI 619

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                 ++   G++I ++   C+           F + I    + R+    +   L    
Sbjct: 620 WEAANASKAVIGSNIYDLFKDCTE----------FLSPIEDVLEGRERELFSEAALHGRW 669

Query: 526 LEYSIIPLPNAQTMLTFVNV-----------------------TDSVRAERALTEKNEAL 562
           L+   +P+   + +    +V                           R  + L     A 
Sbjct: 670 LKTKYVPILGKKGIAGQYDVSYIGGIIGVSVDVTEIHNKSMELEARERENQVLVANESAA 729

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++A ++K+ F+  +S+E+R+P+T ++G  ++L  +    L  +Q ++ E I  S+  LL 
Sbjct: 730 KEASKLKSEFLASMSHEIRTPITGVVGMAEILLDT---PLEEEQREFAENIQRSANALLT 786

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           ++NDILD++ V++G   L+                           +     G   + + 
Sbjct: 787 VINDILDISKVESGR--LDIEEFD--------------------HTVDFSEFGGNMTVIG 824

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSV 738
           D  R+ QI + +L+N++ F+ +G   + +   +++ D I   F VK++G  I ED+ + +
Sbjct: 825 DPGRVRQILTNLLTNSIKFTHEGFVKLAVGVEKEDEDVIVVKFVVKDSGIGIDEDVQQKL 884

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F        RR  G GLGL+I ++ ++L GG + ++SS    TT +  IP
Sbjct: 885 FQPFTQADSSTARRFGGTGLGLTISKNLVDLMGGSIGLASSLGAGTTAHFIIP 937


>gi|262165828|ref|ZP_06033565.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
 gi|262025544|gb|EEY44212.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
          Length = 1194

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/363 (24%), Positives = 153/363 (42%), Gaps = 17/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +   +G + L+N A+R                 N    CS  
Sbjct: 539 EQIQWLTELLDAIPSMIYISDDEGDVVLTNAAYRDAMGAC-----HANDCLNNLPDCSFL 593

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSV 549
                    ++ +I          +    ++   +      P+   Q  LT F ++T+  
Sbjct: 594 QLPDSSTSEYSVVIQIPARPCAIGEHYYHVIRRGI----AHPINRRQYYLTLFNDITELK 649

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E AL +      +A E +N F+  VS+ELR+P+  ++G  ++L +    +   +    
Sbjct: 650 ETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSN---ESQLL 706

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +     S+  L   VNDILD + ++A  ++L+ +T  L D L  + +S         +  
Sbjct: 707 LTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDF 766

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            V         V  D  RL QI + +LSNA+ F+ KGS + +   +    F F V + G 
Sbjct: 767 IVNWQPDARLLVQVDALRLNQIITNLLSNALKFTEKGS-IRICVEQSEQHFTFEVTDTGC 825

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + E    S+F  FV       RR  G GLG+SIV + + L GGH+ + S  +  TT+  
Sbjct: 826 GMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVRV 885

Query: 787 RIP 789
            +P
Sbjct: 886 SLP 888



 Score = 38.4 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 103/338 (30%), Gaps = 34/338 (10%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            +  +   L  T    +  +  I     L D++  +++  D  GD++  N +Y+      
Sbjct: 519 WVTRLRGLLKNTQHVAQLSTEQIQWLTELLDAIPSMIYISDDEGDVVLTNAAYRDAMGAC 578

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE--HGNNKSYKIVR------ 281
                    +      +    ++  SS  E +    +       G    Y ++R      
Sbjct: 579 HA------NDCLNNLPDCSFLQLPDSSTSEYSVVIQIPARPCAIGE-HYYHVIRRGIAHP 631

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTH-TYEILHNLTVAIAIFDQNRYLQFHNRSFV---- 336
           +        +  D+++       L   T + L       A+  +N +L   +        
Sbjct: 632 INRRQYYLTLFNDITELKETESALRQSTAQALQ------AVEARNHFLAVVSHELRTPIA 685

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD--TWHL 394
            +  + +  LA+   ++E    L +A    E+L         FS  ++ +   D  T+HL
Sbjct: 686 AMLGL-MEILASRIKSNESQLLLTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHL 744

Query: 395 PNGQT--LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
            +     L     +    G  ++      Q D             + I +L      F  
Sbjct: 745 ADELCPLLRSFEATADLQGLDFIVN---WQPDARLLVQVDALRLNQIITNLLSNALKFTE 801

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            G I++        +  E      G     IA+    +
Sbjct: 802 KGSIRICVEQSEQHFTFEVTDTGCGMTEPQIASIFQPF 839


>gi|260461500|ref|ZP_05809747.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259032570|gb|EEW33834.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 779

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/312 (25%), Positives = 150/312 (48%), Gaps = 17/312 (5%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R  N+     +   + T+ D+ER        + SD +L ++   L     ++ F      
Sbjct: 154 RNQNDLFVQPMLVRVRTAMDEERHLAD----VASDRLLLWASGLLFAVLAVVAFWIFRPM 209

Query: 549 VRA-ERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +A  RA  +  E+L KA   D  K+ F+ ++S+E+R+P+  ++G  +LL  ++   L +
Sbjct: 210 EQAIRRAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTE---LTA 266

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  + + I  S   LL ++NDILD + ++AG + L+ +   L + + +V   ++ ++ E
Sbjct: 267 RQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLAEAVEDVATLVSARVAE 326

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFI 720
            N+ + V  D +L +  V D  R  QI + ++ NA+ F+ KG   + +     NG     
Sbjct: 327 KNLELIVRVDPRLPTYVVGDAGRFRQIVTNLVGNAVKFTEKGHVLIDVGGETVNGVVQLK 386

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  IP +  ++VF +F        RR  G GLGL+I    ++L  G + + S  
Sbjct: 387 LRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVESEI 446

Query: 779 EGVTTINCRIPS 790
              +     +P 
Sbjct: 447 GRGSVFWFAVPL 458


>gi|332980938|ref|YP_004462379.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332698616|gb|AEE95557.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 471

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 121/244 (49%), Gaps = 4/244 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +   A+   +  L K D+++   + +VS+ELR+PL+ I G+++ LK   +     +Q
Sbjct: 227 ELGQLASAINYMSSELAKLDQMRRDLIANVSHELRTPLSLIRGYSEALKDGVVKD-TEQQ 285

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            QYV+ I   +  L  LV+D+LDL+ +++G + +N     ++  ++E+ +       +N 
Sbjct: 286 KQYVDIILDETARLQKLVSDLLDLSQLESGSLSINPHPFSISRCIHEICRRFEAAAAKNQ 345

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +   +D  +    AD  R+ Q+   ++ NA++ +     +I+ A + +G     V + 
Sbjct: 346 IELTASADDNII-VHADEGRIEQVLYNLIQNAINHTPTHGRIIVSAEKHDGKAFIQVSDT 404

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I  D    +F++F    H   R+G GLGL+I    +  HG  +++ S     TT   
Sbjct: 405 GRGISPDDLPHIFDKFYKGEH--NRKGTGLGLTIARGILTAHGSDITVKSQPNQSTTFAF 462

Query: 787 RIPS 790
            +P 
Sbjct: 463 YLPL 466


>gi|302185632|ref|ZP_07262305.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 1165

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 171/390 (43%), Gaps = 21/390 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E       +     ++     + V   +G +++ N ++  ++  +  
Sbjct: 517 AWMRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLKVFSAQRE 576

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +               +  +    A  T+   +R    G  EL     + + I+P
Sbjct: 577 DIIGKSATEGGLGNAFEAREYAADYQRVMASDTALILDRPLHIGEREL----TIYHWILP 632

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  ++++++  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 633 FRDSLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 692

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK ++ G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 693 IGMLELALKRAEHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERAN 749

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 750 LRRLVESVLRVFDGLARQKDLELVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMG 809

Query: 706 ST-VILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
              V+L+AA            +V+++G  I  +  + +F  F    + GQ  R G GLGL
Sbjct: 810 RIKVVLQAAESPDPQLLHLHITVQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGL 869

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  S   + GG++S+ S+    T I+  +
Sbjct: 870 VICRSLCMMMGGNLSLDSTPGHGTRISMNL 899



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI-- 231
           +  ++ +     + L +     + L +     ++ RD+ G +   N SY K    +    
Sbjct: 519 MRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLKVFSAQREDI 578

Query: 232 ----VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                 +  +G + +  +     + + +S         +   E      + I+   +S G
Sbjct: 579 IGKSATEGGLGNAFEAREYAADYQRVMASDTALILDRPLHIGERELTIYHWILPFRDSLG 638

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           E     G  ID+S+   + + L    E     + A + F
Sbjct: 639 EVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTF 677


>gi|326797022|ref|YP_004314842.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
 gi|326547786|gb|ADZ93006.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
          Length = 911

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    + L +A + K++FV  +S+E+R+P+  +IG ++L   ++   LN++Q+ Y+  I
Sbjct: 173 ALENAKQELEQALDAKSAFVARMSHEIRTPINAVIGLSNLALKTQ---LNAEQNDYLTKI 229

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S  +LL LVND+LD + ++AG++KL        +L+       +   +E N+ +    
Sbjct: 230 KDSGDVLLGLVNDVLDFSKIEAGMLKLESVPFHPEELVRTTINMNSFSAYEKNLELITDI 289

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGS 728
              + +  + D  R+ QI   +++NA+ F+S+GS  + L +             V + G 
Sbjct: 290 AKDVPTELIGDPLRIQQILINLVNNAVKFTSEGSICIRLSSEEQEEGHVSLKCEVSDTGI 349

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE+   ++F+ F        R   G GLGL+I      L GG +++ S     TT   
Sbjct: 350 GIPEEHMDTLFSSFAQADDSITRKFGGTGLGLTITSQLSELMGGSITVKSELGSGTTFTV 409

Query: 787 RIPSK 791
            +P K
Sbjct: 410 HLPLK 414


>gi|323691898|ref|ZP_08106151.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323504050|gb|EGB19859.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1053

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/465 (21%), Positives = 195/465 (41%), Gaps = 47/465 (10%)

Query: 357 EFLRSANKLPEQLNWKTWKE-----NIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNP 408
           + L  +  +P   + + +++      +    K  +T+  ++ + +    +T ++ V    
Sbjct: 447 DRLLQSGVVP--RDREQFRDGLNPGRMLERLKHGQTYTFSYSMDDNGDIRTKNITVAPID 504

Query: 409 R--GGTIWMFENLTVQVDLETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAF 463
              G       ++T  +  + +   ++    E    ID  S    ++             
Sbjct: 505 LRLGRVCLSRTDITDSIREQQRLLRVIAYTCELAGFIDAASGSFIMYTRQ---------- 554

Query: 464 RSLWKTEENRLSPGTHIRNIAATC---SRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             L     +       + +  A C   +  + E         ++    ++ +     L  
Sbjct: 555 MILENLPPHTTQNYNEVLDNLAGCYGTAVSHEEVKHMFCLETLLHRLAEKPEGYDFVLPY 614

Query: 521 -LSDSVLEYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADE----IKNS 571
            ++DS+    +  L   Q   T      +VTD + AERA   + E   K        K+ 
Sbjct: 615 QVTDSLRYKQVNVLWGDQNHKTVCLVRSDVTDMLAAERAAKTELERALKLSREASLAKSD 674

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+++R+P+  I+G T L K +    +  +    ++ ISA+S  LLNL+ND+LD+ 
Sbjct: 675 FLSAMSHDIRTPMNAIMGMTTLAKANSGDPV--RVLDCLQKISAASGHLLNLINDVLDMN 732

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQI 690
            ++   + LN   I L DL+ ++ + IA +  +  +  +++  G +   F  D  R+ QI
Sbjct: 733 KIERAQITLNREKIYLPDLIKQIGEIIAPQAEQAGLCCEILPGGIRNPCFYGDTLRISQI 792

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFV 743
              IL NA+ F+ +G +V   A    G        + F+V++ G  + ++    +F  FV
Sbjct: 793 LINILGNAVKFTPRGGSVRFLAEEIPGAAGSGQACYRFTVRDTGIGMAKETLDHLFEPFV 852

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +  G GLGLSIV+  ++L GG VS+ S  E  TT    +
Sbjct: 853 RSRAVSRVEGTGLGLSIVKGLVDLMGGSVSVQSEPEKGTTFFVEL 897


>gi|309791782|ref|ZP_07686270.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226188|gb|EFO79928.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 854

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/571 (17%), Positives = 198/571 (34%), Gaps = 86/571 (15%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E  + +       +   +   I + D +  +   N+  ++L               E 
Sbjct: 146 QAERALRESEHRFSLLFQYIPFGIGLTDLDGQILIANQPLLDLCGYSQ----------EE 195

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            + L       +Q              + +   KD  H     + +    S  +   + +
Sbjct: 196 FQHLHIGTLFADQSELVALYAGTIRPLQLTLLRKDGTHFQASCSYNRTDVSEDQ-TFLLV 254

Query: 416 FENLTVQVDLETKYNTLV--------------------KVQGETIDHLSEG-------VA 448
            E++T  +  + + + L                     ++  E  D L +        + 
Sbjct: 255 VEDMTADIATQQRIHHLNAVLNGIRRVNRLIAEVSDRNRLIQEACDSLIQTFGYQNAWIV 314

Query: 449 VFGPDGRIK-----------LSNPAFRSLWKTEENRL--------------SPGTHIRNI 483
                  I              N     +     +++                   +  I
Sbjct: 315 RTDSQRHILAIASAGMSQPIRHNLDHDQVMPWCSDQVSEPNSVLVMHQQENCRDCPLNTI 374

Query: 484 AATCSRY-----YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
            A   R      YN  +   +   +   F ++ +      EL  D       I + +   
Sbjct: 375 CAEQDRLVSQLTYNGKNYGVMSVGVPAGFVEDAEDQSLFAELARDLAFALYKIDVEDERG 434

Query: 537 ----------QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                     Q +   ++  +   AER   L+  N  L  A  +K+ F+ ++S+ELR+PL
Sbjct: 435 QAERDLQHSQQLLTEALDALEQRVAERTRELSIANLNLAHAARVKDEFLANMSHELRTPL 494

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G T++      G L+   ++ +  I  S   LL L+ND+LD+A +++G   L    
Sbjct: 495 NAILGRTEMCLDGFYGPLSDGATKALHTIEESGRHLLELINDVLDVAKIESGHADLELQL 554

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           I ++++     + I+ +  + +I I    D ++    AD +R+ QI   +L+NA+ F+ +
Sbjct: 555 IAVDEVCAASLRLISQQALKKHIHINQEIDPQVDLIHADARRIKQILINLLNNAVKFTPQ 614

Query: 705 GSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
           G  +   +   R+     F V + G  I  D    +F  F            G GLGL +
Sbjct: 615 GGNIGLTVTGDREQDLVHFIVWDTGIGIAPDQIGRLFQPFTQIDSSLSRAHEGTGLGLHL 674

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           V S + LHGG V + S+    +  +  +P K
Sbjct: 675 VASLVRLHGGSVQVESTLGTGSRFSFMLPWK 705



 Score = 41.1 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 23/170 (13%)

Query: 416 FENLTVQVDL---ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            + +T +  L   E               ++  G+ +   DG+I ++N     L    + 
Sbjct: 135 IQQITTERRLQQAERALRESEHRFSLLFQYIPFGIGLTDLDGQILIANQPLLDLCGYSQE 194

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE----Y 528
                 HI  + A      ++S+   L+A  I       + LQ TL     +  +    Y
Sbjct: 195 EFQH-LHIGTLFA------DQSELVALYAGTI-------RPLQLTLLRKDGTHFQASCSY 240

Query: 529 SIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +   +   QT +L   ++T  +  ++ +   N  L     + N  +  VS
Sbjct: 241 NRTDVSEDQTFLLVVEDMTADIATQQRIHHLNAVLNGIRRV-NRLIAEVS 289


>gi|126696865|ref|YP_001091751.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543908|gb|ABO18150.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 688

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 47/390 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  + L++ E   L     +  I   
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSKGKIVLTNPTSKRLFRWEGRFLEGKYFLNEIPEI 347

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            S   +     +         DD R SL     TL ++  SVL+ + + L          
Sbjct: 348 LSNDLHT--NIESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAV----- 400

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  +N F+ +VS+ELR+PL NI  + + L   K    +
Sbjct: 401 -TIQDLTREVEL----------NAAQNRFISNVSHELRTPLFNIKSYVETLHDLKDQLSD 449

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G + +    I +   + +  ++      
Sbjct: 450 EEQIEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLEQIDIKPAIEQTLRNYRLNAT 508

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           E N+ +    +  +   + +   LLQ+F  +L N + FS K S++I++A           
Sbjct: 509 EKNVSLAHEIEETIPPILGNFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFP 568

Query: 718 ------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGL 758
                                  + + GS I +   + +F+RF    +     +G GLGL
Sbjct: 569 PNIKNNAAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSVHTEQGTGLGL 628

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           SIV   I  HGG + ++S     TT    +
Sbjct: 629 SIVRGIIEKHGGEIRMASELGVGTTFWFDL 658



 Score = 44.5 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D    +   N +   L+  +  FL      +
Sbjct: 283 DEANIEELKAAQIKQQSLIATMADGAILLDSKGKIVLTNPTSKRLFRWEGRFLEGKYFLN 342

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           E+ E L +        +  T  E+I +  K  +  + +   P  +TL +++ S       
Sbjct: 343 EIPEILSN--------DLHTNIESILNREKEKDDLRFSLGEP-ARTLRIVLQSVLDTNKV 393

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    N  +
Sbjct: 394 ELKGIAVTIQDLTREVELNAAQNRFI 419


>gi|258624915|ref|ZP_05719842.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
 gi|258582771|gb|EEW07593.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
          Length = 1171

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/363 (24%), Positives = 153/363 (42%), Gaps = 17/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +   +G + L+N A+R                 N    CS  
Sbjct: 516 EQIQWLTELLDAIPSMIYISDDEGDVVLTNAAYRDAMGAC-----HANDCLNNLPDCSFL 570

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSV 549
                    ++ +I          +    ++   +      P+   Q  LT F ++T+  
Sbjct: 571 QLPDSSTTEYSVVIQIPARSCAIGEHYYHVIRRGI----AHPINRRQYYLTLFNDITELK 626

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E AL +      +A E +N F+  VS+ELR+P+  ++G  ++L +    +   +    
Sbjct: 627 ETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSN---ESQLL 683

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +     S+  L   VNDILD + ++A  ++L+ +T  L D L  + +S         +  
Sbjct: 684 LTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDF 743

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            V         V  D  RL QI + +LSNA+ F+ KGS + +   +    F F V + G 
Sbjct: 744 IVYWQPDARLLVQVDALRLNQIITNLLSNALKFTEKGS-IRICVEQSEQHFTFEVTDTGC 802

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + E    S+F  FV       RR  G GLG+SIV + + L GGH+ + S  +  TT+  
Sbjct: 803 GMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVRV 862

Query: 787 RIP 789
            +P
Sbjct: 863 SLP 865



 Score = 38.4 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +  +   L  T    +  +  I     L D++  +++  D  GD++  N +Y+     
Sbjct: 496 WVTRLRGLLKNTQHVAQLSTEQIQWLTELLDAIPSMIYISDDEGDVVLTNAAYRDAMGA 554


>gi|196249913|ref|ZP_03148608.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|196210427|gb|EDY05191.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 518

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 149/371 (40%), Gaps = 22/371 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++              I+++  G+      G I L N AF++ +  + +      +    
Sbjct: 167 EMSRAREIQTDRLHTLIENVGSGLLFIDHRGHIHLINRAFQTYFHLDSSDCLYRPY---- 222

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               +      D   L   I  +    R+ ++ T+ +      +    P+         +
Sbjct: 223 ----ADVLPHRDIIKLIDDIFITETAMRRHMRLTIGIERKH-FDVYGAPIIGTNAEWKGI 277

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V      E         L++ ++I+  FV +VS+EL++P+T+I GF + L    +    
Sbjct: 278 VVVFHDITE---------LKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAMKD-E 327

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                ++  I   S  L  LV ++LDL+ ++    +L    + + +++ E       K  
Sbjct: 328 EALEHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDVAEVIAEAAAVFRQKAE 387

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I ++V +   L     DR RL QI   +L+NA+ ++ +   V ++A     + +  V
Sbjct: 388 EKQIDLRVEALPGL-VIRGDRNRLKQILINLLANALAYTPEHGQVAVEAEEKEKEVLIHV 446

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I E     +F RF     A      G GLGLSIV+  +  H G+++++S     
Sbjct: 447 KDTGIGIEEKEIPRIFERFYRIDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASEVGRG 506

Query: 782 TTINCRIPSKE 792
           T      P  E
Sbjct: 507 TVFTIHFPKPE 517



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A ++ +     + Q    + ++ N+   +   D   ++   NR+F   + +D +     
Sbjct: 161 LARNLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHIHLINRAFQTYFHLDSSDCLYR 220

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           P  D L             +     + ++         H D +  P      +I T+   
Sbjct: 221 PYADVLPHRDIIKLIDDIFITETAMRRHMRLTIGIERKHFDVYGAP------IIGTNAEW 274

Query: 410 GGTIWMFENLTVQVDLET 427
            G + +F ++T    LE 
Sbjct: 275 KGIVVVFHDITELKRLEQ 292


>gi|149175132|ref|ZP_01853755.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846110|gb|EDL60450.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 568

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 161/373 (43%), Gaps = 34/373 (9%)

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR--------------- 489
           + V     +GRI +++P+  S W      +S G +I  +    SR               
Sbjct: 23  DVVITMTEEGRILMASPSIESAWGWNTEEIS-GKNIYELLTEASRKPCLHCISECVVSGN 81

Query: 490 -------YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                     +     LF  I+   +D  +  Q  + +  D    + +            
Sbjct: 82  SAVCELVVKRKDQSCSLFELILHQLEDSCEGSQ-FIGIFRDKSERFRLQDQQTEYLERLK 140

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +   +  R E  L      + +A+++KN F+ ++S+E+R+P+T IIG++++LK S +   
Sbjct: 141 LTRRELKRKEFELKSALNMVEQANQVKNEFLSNMSHEIRTPMTAIIGYSEVLKESVIQ-- 198

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            ++Q   +E I  +   LL ++NDILD++ ++ G  +L         ++ EV      K 
Sbjct: 199 -AEQHDLIETIQRNGDHLLQVINDILDISKIELGQCELKTEACFPLQIVQEVIALHRPKA 257

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGD-- 718
            +  +R+       +  +  +D  RL Q+ + ++SNA+ F++ G   + ++    +    
Sbjct: 258 VQKGLRLLTNIHESIPETIQSDPIRLKQVLNNLVSNAVKFTNNGFVRIEIRTFNRSNFER 317

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              F+V + G  I +D  K +F+ F        R   G GLGL++ +  + L GG +S+ 
Sbjct: 318 LLQFNVADTGIGISKDNLKRIFDPFTQADSSMSRPYSGTGLGLTLSQKLVQLLGGKLSVQ 377

Query: 776 SSDEGVTTINCRI 788
           S+    +  +  +
Sbjct: 378 STVNQGSIFSVTL 390


>gi|327438193|dbj|BAK14558.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 611

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 151/396 (38%), Gaps = 31/396 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V V      G + + F +LT ++ + ++      +     + ++++GV      G+I L 
Sbjct: 233 VRVYGTDEIGQLAIAFNHLTNRLQEAQSTTEAERRKLASVLSNMTDGVIATDRKGKIILI 292

Query: 460 N-PAFRSLWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGT 517
           N PA   L  + E  L+    I ++      Y + +         +  S +D    L+  
Sbjct: 293 NDPALELLHDSRETTLN--RPIASVLRLDQEYSFEDLIHMKDPVNLDFSMNDAPYVLRA- 349

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                     +S+I             + D    E           K D  +  FV +VS
Sbjct: 350 ---------NFSVIQKETGFVNGLITVLHDITEQE-----------KIDMERREFVANVS 389

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N     ++      +  ++ LVND+L L+ +D+  
Sbjct: 390 HELRTPLTTMRSYLEALAEGAWKDENI-APTFLNVTQTETERMIRLVNDLLQLSKMDSQE 448

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +LN   +  N    ++           N+    +   K      D  +L Q+   I+SN
Sbjct: 449 YELNLEFVEFNKFFTQIIDRFEMS-KSQNVEFIRLLPEKSYFVDIDTDKLTQVIDNIISN 507

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           A+ +S  G  +       +      + ++G  IP++    +F+RF        R   G G
Sbjct: 508 ALKYSPDGGNIRFGFTVHDNMIRVMISDDGMGIPKENVTRIFDRFYRVDRARARSMGGTG 567

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL+I    I  HGG +   S +   TTI   +P +
Sbjct: 568 LGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLPYE 603


>gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1100

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 123/672 (18%), Positives = 245/672 (36%), Gaps = 60/672 (8%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFL-VWHRDQAGDILWANISYKKNTETEGI 231
            +  E          L       + +F       ++       I+ AN + ++       
Sbjct: 290 ALQEETEIRKRAQSALWESAERHRAMFTDNQLPQLFVESATLRIMEANPAAERFYGFRPG 349

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
                     +L + +  + +    + +      ++  E  + + +     L+      +
Sbjct: 350 HLVGMSLHGLRLRQPDEDENLALDGSKQLIVQHRLAWGEVRDVELFVSTVFLSDQEHKLV 409

Query: 292 AI-DVSKEITVNDQLTHTYEILHNLTVA--IAIFD----QNRYLQFHNRSFVELWEIDLA 344
            + D+S+ +   +    + E L        IA +D    ++R     N  + EL      
Sbjct: 410 TVLDISERVAAEEARRESEERLDLAVRGGDIAFWDWDIGEDR--VVSNERWAELLGCRQD 467

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            LA    +         A  + EQL      +  +F V     T  D W    G    V 
Sbjct: 468 QLAGRSDDWLSRLHPEDAASVREQLQRCLDGRALVFKVQFRLRTEADEW-RWLGARGRVF 526

Query: 404 VTSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA------------V 449
           + ++         +  ++T +   E + +++            E ++             
Sbjct: 527 LRADDGSPLRMAGIAFDITERRRTENRLSSINTCVLGFTADPDENISSLTGLIRELLGGQ 586

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFD 508
                R++    A  S W      +S      ++ AA  +             +   +  
Sbjct: 587 VACYKRLEKGGNACVSAWGAPACAISADCVDESVFAAMLAGRGQGVFVVRDLQSTPFALQ 646

Query: 509 DERKS------LQGTLELLSDSVLEYSII-------PLPNAQTMLTFVNVTDSVRAER-- 553
           D   S        G L  L    +    +       P  N   ++  V  T  V  ER  
Sbjct: 647 DTLASAASPSTFVGDLVFLDGRPVGALYVLFRGDYEPSENDGKLMGIVAATIRVEEERKI 706

Query: 554 ---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L +  E    A+  K+ F+ ++S+E+R+PL  I G   L+  +K   L+ +Q  YV
Sbjct: 707 SAQQLVKAKEIAESANRAKSEFLANMSHEIRTPLNGIFGMLQLVGGTK---LDDEQRDYV 763

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +    S   LL ++ND+LD + ++AG++ +    + +  ++ +V ++ + +  E  + + 
Sbjct: 764 DTALTSGRSLLRVINDVLDFSKMEAGMLTVESEPLDIRHVVADVLENFSVQAAEKQLVMA 823

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFS 722
           V +D  +   + +D  R+ QI   ++ NA+ F+  G  + +++     D          S
Sbjct: 824 VETDASVPPLILSDEARIRQILFNLVGNAVKFTPSG-RITVESWVQRADTTDQTMRLFLS 882

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IPE+M  SVF+ F  V  +H  +  G GLGL IV+  ++L GG + + S D  
Sbjct: 883 VSDTGIGIPENMLGSVFSAFSQVDGSHTRKYGGTGLGLGIVKRLVDLMGGEIYVES-DGE 941

Query: 781 VTTINCRIPSKE 792
            T I+  +  +E
Sbjct: 942 GTRIHLFLKVRE 953


>gi|269836401|ref|YP_003318629.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785664|gb|ACZ37807.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 598

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 149/377 (39%), Gaps = 27/377 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +T  +    +     + +   I +HL++G+ +    G++ L N A   L  T  +RL
Sbjct: 230 FNEMTTTLQANIEAIEAERARLSAIVEHLTDGILIVDDQGQLALINNAAERLLGTPRDRL 289

Query: 475 SPGTHIRNIAA-TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
               +   +     +    ++   D     +      R+ ++G    +        +I  
Sbjct: 290 LNRPYALAVRDHDLAEVIAQAHSGDEPVRRLFEIGQPRRYVEGVAYSIPHRATPVVVI-- 347

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                                L +  E LR+ D I+  FV +VS+ELR+P+ ++    + 
Sbjct: 348 ---------------------LRDVTE-LRRTDMIRRDFVANVSHELRTPIASLKALVET 385

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L    L        +++  +      L  LV D+L+L+  ++G + L+     +  +  +
Sbjct: 386 LLDGALED-EEVAHEFLARMETEVDGLARLVQDLLELSRAESGRLTLSPVAADIRRVAEQ 444

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           V   + T+     + I++     L     D +R+ Q+   ++ NA+ F+  G  + + AA
Sbjct: 445 VIARLRTQAEPKKLDIRIEIPDGLTPGRFDPERIEQVLVNLVHNAVKFTPPGGIITVGAA 504

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            ++   +  V + G  +  +    +F RF          G GLGLSI    + LHGG + 
Sbjct: 505 AEDDHLVVWVADTGPGVAPEDRDRIFERFYKTDRSRADAGTGLGLSIARHLVELHGGRIW 564

Query: 774 ISSSDEGVTTINCRIPS 790
           +  +    TTI   +P 
Sbjct: 565 VDGTARPGTTIKFTLPL 581



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 76/289 (26%), Gaps = 34/289 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
              D +   L    +   +    +   +V   S  F  W R+    +  A          
Sbjct: 124 RPSDTLDRTLIYLAVPIVRDGEQLGAARVALPSDQFAGWLRNIVVAVAAALGIAALAIAA 183

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
              +    I        +  ++        + +          G      I  + ++F E
Sbjct: 184 LSAILAGVITRPLSELIQTARRIA------QGDLAARAPEHAGGE-----IAELSHAFNE 232

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
               +  +    +  +      I+ +LT  I I D    L   N +   L       L  
Sbjct: 233 MTTTLQAN-IEAIEAERARLSAIVEHLTDGILIVDDQGQLALINNAAERLLGTPRDRLLN 291

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            P    +    R  +         +  E +  +++  +  +       G    +   + P
Sbjct: 292 RPYALAV----RDHDLAEVIAQAHSGDEPVRRLFEIGQPRRYV----EGVAYSIPHRATP 343

Query: 409 RGGTIWMFENLTVQVD-----------LETKYNTLVKVQGETIDHLSEG 446
               + +  ++T               +  +  T +      ++ L +G
Sbjct: 344 ---VVVILRDVTELRRTDMIRRDFVANVSHELRTPIASLKALVETLLDG 389


>gi|225375400|ref|ZP_03752621.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
           16841]
 gi|225212736|gb|EEG95090.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
           16841]
          Length = 954

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 10/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                L E  +   +A++ K+ F+  +S+E+R+P+  I+G T++ K         K   Y
Sbjct: 548 EKNEQLLEAVDQANRANQAKSDFLARMSHEIRTPMNAIVGLTEIAK--HYEDDPKKIEDY 605

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  SS +LLN++NDILD+++++   MK+      L+++L  V      +  +  I  
Sbjct: 606 LDKIDVSSKVLLNIINDILDMSSIENKKMKIAKEPFDLHEILMSVCTIYEPQCRQKGIVF 665

Query: 670 KVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFIFSV 723
           +V  +       + D  R+ QI   ++SNA  F+S G  + +K        +   F F V
Sbjct: 666 EVQDEEVTHTYLIGDGLRVNQILLNLVSNAYKFTSSGGKITIKVKELYVKEEKAYFNFLV 725

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  + E+M   +F  F   +     +  G GLGLSI ++F+ L  G +S+ S     
Sbjct: 726 EDTGEGMSEEMQTRLFQPFEQESATTAQKHGGSGLGLSIAKNFVELMSGSISVKSKKGEG 785

Query: 782 TTINCRIPSK 791
           TT    IP +
Sbjct: 786 TTFVVSIPFE 795


>gi|283852351|ref|ZP_06369622.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
 gi|283572308|gb|EFC20297.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
          Length = 1919

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 132/687 (19%), Positives = 251/687 (36%), Gaps = 107/687 (15%)

Query: 184  KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
            + KK    +             V+       +  AN + ++     G           + 
Sbjct: 1100 ERKKAEEAVRDMARFPSENPNPVFRVGADMAVSQANTASREFLRHSGSGEG-------ET 1152

Query: 244  FKEEIKKRMISSSALEKNFCETVSTLEHGNN-KSYKIVRVLNSFGEAGIAIDVSKEITVN 302
            F E  +  +  + A         +    G     + +  V          +D++      
Sbjct: 1153 FPEAYRPAVREAFASGGVTQFEAAV---GERMFVFAVCPVPVRGYANIYGMDMTARKKAE 1209

Query: 303  DQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            + L  + + L  L      AI I        + N + V L+    A        +ELL  
Sbjct: 1210 EALAKSEQRLRQLVDLAPDAIIIQ-SGGRFAYVNPATVRLFGATSA--------EELLGE 1260

Query: 359  LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNP---RGG--T 412
               ++  P+       +  + +  +++    +  +L  +G ++ V   + P   +GG  +
Sbjct: 1261 DIVSHVHPDSREAVRKRIRMANEERATLPSIELAYLRLDGTSVPVEAVAAPFEYQGGPGS 1320

Query: 413  IWMFENLTVQVDL--ETKYNT-----LVKVQGETIDHLSEGVAV---------------- 449
            +    +++ +  +  ETK  T     + +V+   +  LS  V                  
Sbjct: 1321 LVFARDISERRRVAEETKRRTDMAEAVARVRDTYVSGLSPAVIFGTALGELLRLTDSSYG 1380

Query: 450  ------FGPDGR-----IKLSNPAFRSLWKTE---------ENRLSPGTHIRNIA----- 484
                      GR     + +SN A+ +                    G H   +A     
Sbjct: 1381 FIAELETDDKGRPFQQFLAISNLAWEAGTPRFYAQYAPSGLMTHAMDGLHGAAVASGGPV 1440

Query: 485  ------ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-----DSVLEYSIIPL 533
                         +  DG       +       +   G++ L +     D+ L  SI PL
Sbjct: 1441 IANRPGEDPRASGHRPDGHPALDNFLGLPMFHGRECMGSIGLANRPEGYDNRLAASIRPL 1500

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                 + T   + + +RAER L    +A   A   K+ F+ ++S+E+R+PL  ++G   L
Sbjct: 1501 -----VETCAQLIERLRAERRLVAAKQAAEAASLSKSEFLANMSHEIRTPLNGVLGMLQL 1555

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            ++T+   +L+S+Q +Y +    SS  L  L++DILDL+ V++G + +  +     DL   
Sbjct: 1556 MQTT---ALDSEQKEYADLAVKSSQRLTRLLSDILDLSLVESGRLTIREAPCAPADLRAA 1612

Query: 654  VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            V    A    +  + + V  D  L    V D  RL QI   ++ NA+ F+ +G  V L+ 
Sbjct: 1613 VLDLFALPARDKGVALSVFLDESLPEKIVGDEVRLRQILFNLVGNAVKFTDQG-QVTLEI 1671

Query: 713  ARDNGD------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
               +         + +V + G  IP+D   ++F  F  V   +  +  G GLGLSIV   
Sbjct: 1672 GPASRRFDAAFRVLVTVADTGIGIPDDQLAAIFEPFGQVEGVYVRRFGGAGLGLSIVRRL 1731

Query: 765  INLHGGHVSISSSDEGVTTINCRIPSK 791
            + L GG +++ S +   T +   +P +
Sbjct: 1732 VGLMGGELAVDSEEGRGTIMYVSLPLR 1758



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 82/583 (14%), Positives = 190/583 (32%), Gaps = 83/583 (14%)

Query: 28   GTIAGMLL-TTIIPII-----LLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
            G +AG++L  T I ++     +L R +  L   V+     L E    L   + ++ + + 
Sbjct: 827  GVVAGVVLTFTDITMLKDAEAVLRRGKAELEALVDRRTEELREQARLLDLTNVMVRDLDN 886

Query: 82   LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF 141
              + W    E  + +    +   + +  ++LL             + +  E  R  GQ  
Sbjct: 887  RILFW---TEGCQRLFGWTREEAVGRISSELL--GTEYPEPQAAIMERFLEDGRWSGQ-- 939

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYS-----ELAETTLKCKKLSNHISVFK 196
             L   T++              A   +L+ D         E+A    +  +L      + 
Sbjct: 940  -LRKRTRDGRPKD--------LAVTWLLNRDPAGRPLSILEVANDVTEQNRLEAQARRWS 990

Query: 197  VLFDSLDFLVWHRDQ-AGDILWANISYKKNTETEGIVFQKAIGESRK-LFKEEIKKRMIS 254
             +F++ +F + H D      +  N ++ +     G   ++  G     LF  E ++R+ +
Sbjct: 991  RVFEAAEFGLAHVDAADNTFIEVNRAFAR---DRGYTPEELAGRPLSVLFPPETRQRVQA 1047

Query: 255  S----SALEKNFCETVSTLEHGNN--KSYKIVRVLNSFG----EAGIAIDVSKEITVNDQ 304
            +     A      ET    + G+      ++  + ++ G        A+D+++     + 
Sbjct: 1048 AIQGFDATGHGVIETEHLRKDGSRMPVLVEVTVLRDAAGKPASRVAYALDITERKKAEEA 1107

Query: 305  LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
            +             +     +  +   N +                      EFLR +  
Sbjct: 1108 VRDMARFPSENPNPVFRVGADMAVSQANTASR--------------------EFLRHSGS 1147

Query: 365  LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-SNPRGGTIWMF-ENLTVQ 422
               +   + ++  +   + S       +    G+ + V      P  G   ++  ++T +
Sbjct: 1148 GEGETFPEAYRPAVREAFASGGV--TQFEAAVGERMFVFAVCPVPVRGYANIYGMDMTAR 1205

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               E       +   + +D   + + +    GR    NPA   L+         G  I +
Sbjct: 1206 KKAEEALAKSEQRLRQLVDLAPDAIIIQSG-GRFAYVNPATVRLFGATSAEELLGEDIVS 1264

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQ----GTLELLSDSV-LEYSIIPLP--- 534
                    +   D  +     I   ++ER +L       L L   SV +E    P     
Sbjct: 1265 --------HVHPDSREAVRKRIRMANEERATLPSIELAYLRLDGTSVPVEAVAAPFEYQG 1316

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               +++   ++++  R       + +       +++++V  +S
Sbjct: 1317 GPGSLVFARDISERRRVAEETKRRTDMAEAVARVRDTYVSGLS 1359


>gi|146275719|ref|YP_001165879.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans
            DSM 12444]
 gi|145322410|gb|ABP64353.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans
            DSM 12444]
          Length = 1782

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 24/350 (6%)

Query: 463  FRSLWKTEENRLSPGTH----IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            F    +T  + L+        + N  A   R         L    + +   E    Q  L
Sbjct: 1120 FEEFNETHHSFLNQLMETVGIVLNTIAATMRTEGLLAQSQLLTQELQARQTELTRKQEEL 1179

Query: 519  ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               ++ + E +   L   +         +   A RA+ EK E L    + K+ F+ ++S+
Sbjct: 1180 HATNEELQEKA--QLLENEKKQVEAKNFEIEMARRAVEEKAEQLALTSKYKSEFLANMSH 1237

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            ELR+PL +++  + LL  ++ G+LN KQ+++   I  + T LLNL+NDILDL+ +++G +
Sbjct: 1238 ELRTPLNSLLILSKLLADNQQGNLNEKQTEFARTIHGAGTDLLNLINDILDLSKIESGTV 1297

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSN 697
             ++   + +  +   V+++      E  +  ++  D  L  S   D +RL QI   +LSN
Sbjct: 1298 SIDIGDMSIPGMKQHVERTFRQVASEKGLAFEIDFDDSLPASIQTDEKRLQQIVLNLLSN 1357

Query: 698  AMDFSSKGSTVILKAARDNGDF--------------IFSVKNNGSSIPEDMCKSVFNRFV 743
            A  F+++G  V L        +                SV + G  IPED  K +F  F 
Sbjct: 1358 AFKFTARG-RVTLNVRPARHGWSPTHPVLGDLDRALEISVSDTGIGIPEDKQKLIFEAFQ 1416

Query: 744  SNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                    +  G GLGLSI      L GG + + S     +T    +P K
Sbjct: 1417 QADGTTSRKYGGTGLGLSISREIARLLGGELQVRSVPGEGSTFTLYVPMK 1466


>gi|166713792|ref|ZP_02244999.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 746

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 116/252 (46%), Gaps = 10/252 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
               + E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  
Sbjct: 65  QRHGKLEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLD 121

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   ++  ++SS  LL +V+DILD + ++A  ++L  +T  L +LLN V Q +       
Sbjct: 122 QRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLNGVVQLLQRTAEGR 181

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFI 720
            +R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      
Sbjct: 182 QLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLR 241

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S  
Sbjct: 242 FQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEP 301

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 302 GRGSTFWFEIPL 313


>gi|315127393|ref|YP_004069396.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
 gi|315015907|gb|ADT69245.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
          Length = 924

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 23/298 (7%)

Query: 512 KSLQGTLELLSDSV--LEYSIIPLPNAQTMLTFVNVTDSVRAERA-------LTEKNEAL 562
           + + G  ELL + +  + +S++   +          +D              LT   +  
Sbjct: 224 EPMNGEFELLREGLNTISHSMVMQKDEMQKNIDQATSDYRETLEQYETQNIQLTMAKKEA 283

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+ +K+ F+  +S+ELR+PL  +IGFT  L  +    LN  Q  Y++ I  S+  L+ 
Sbjct: 284 QDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKT---PLNKNQKDYLDTIELSANSLMT 340

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           +++DILD + ++AG M+L      L D +NEV   +A   H+  + + +  + ++     
Sbjct: 341 IISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINPQVPDHLT 400

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARDNGDFIFSVKNNGSSIPEDMCKS 737
            D  R  Q+   +LSNA+ F+ KG+  V +       +    + SV + G  IP D   +
Sbjct: 401 GDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSVLVSVADTGVGIPADKQDA 460

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN----CRIP 789
           +F  F        R   G GLGL I +  +    G ++++S+    T        R+P
Sbjct: 461 LFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGSGTCFTFNGVFRLP 518


>gi|300709685|ref|YP_003735499.1| sensory transduction histidine kinase [Halalkalicoccus jeotgali B3]
 gi|299123368|gb|ADJ13707.1| sensory transduction histidine kinase [Halalkalicoccus jeotgali B3]
          Length = 860

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 102/590 (17%), Positives = 213/590 (36%), Gaps = 56/590 (9%)

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
            + +      A+ E  +        R+ +       +  T S +   +          + 
Sbjct: 283 VQADYERVDAAMSEIVETGDATAVVRIRTRGGRLLPYEFTGSMVAREDG---------SP 333

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
               GIA D+S+       L    + L NL          + L      +       + F
Sbjct: 334 QYICGIARDISQRRRSERALRERQQALSNLI---------KNLPGVVYRYRNETGFPVEF 384

Query: 346 LATNPSNDELLEFLRSANKLPE---------QLNWKTWKENIFSVYKSSETHKDTWHL-- 394
           ++   +   L  + R   +  E           + +  + ++ +     E ++ T+ +  
Sbjct: 385 MSEGCT--ALTGYSRERLESGEVSWTDDVIHPEDREELRADVQTALAEDEQYQTTYRIRT 442

Query: 395 PNGQTLHVIVTSN----PRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            +G+   V    +    P G   ++      +T  V++E +           +D   +  
Sbjct: 443 ADGEIRWVREQGSGVDDPDGSVEYLDGYLTEVTDVVEIEEELRREKAFTESALDAQPDLF 502

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH--------IRNIAATCSRYYNESDGWDL 499
            VF P G +   N  F  +    +  +             + N+     R   + +   +
Sbjct: 503 YVFSPTGEMLRWNDRFNEVTGYSDAEIESMQPTDFVASEDVPNVRNAIGRVATDHETGSI 562

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A ++T  DD     + T  ++ D           +     T  N++  + AE+ L    
Sbjct: 563 EATLVTE-DDRHIPYEFTGSVIEDVGESVYDTREHDLYLCGTGRNISQRITAEQELEAAI 621

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L +++     F    S++L+ PL  I  + DL++    GSL+    +++ Y    +  
Sbjct: 622 EELERSNAELERFAYVASHDLKEPLRMIRSYLDLIQRRYEGSLDEDADEFITYAVDGAER 681

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  +++D+L  + +  G   +    +  N++++ V  SI   + E N  + V     L +
Sbjct: 682 MRRMIDDLLTYSRI--GTDDITLQAVDPNEVIDRVLDSIRIAIEEENADVTV---EDLPT 736

Query: 680 FVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              D Q+L Q+F  ++SNA+ +S      + + A   +  + FSV ++G  I  D    V
Sbjct: 737 VEGDAQQLGQLFQNLISNAIAYSGEAPPEIHVSATEYDDGWQFSVSDSGVGIDPDQIDEV 796

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  F S           +GL+I +  +  HGG + + S     +T +  I
Sbjct: 797 FEIFSSGTVSSSTG---IGLAICKKIVQQHGGEIWVESEPGTGSTFHFTI 843


>gi|146281817|ref|YP_001171970.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri
           A1501]
 gi|145570022|gb|ABP79128.1| probable sensor/response regulator hybrid protein [Pseudomonas
           stutzeri A1501]
          Length = 914

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E  E     +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q  Y++ IS+
Sbjct: 396 REAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRET---PLDRSQQFYLDTISS 452

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
           S   L+ ++NDILD A + +G + L      L  L++E  +    +  E  + + V +  
Sbjct: 453 SGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLHVGLEP 512

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG---DFIFSVKNNGSSI 730
           G       D  RL QI   +LSNA+ F+  G  V+ +   R        +F V ++G  +
Sbjct: 513 GVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVVLEVSCRRTQDGEPRLVFCVSDSGIGM 572

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +++   +F  F        RR  G GLGL+I +  + +  GH+ + S+    +     I
Sbjct: 573 RQEVLAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSTPGRGSRFCFEI 632

Query: 789 PS 790
           P 
Sbjct: 633 PL 634


>gi|87119494|ref|ZP_01075391.1| two-component system sensory histidine kinase [Marinomonas sp.
           MED121]
 gi|86164970|gb|EAQ66238.1| two-component system sensory histidine kinase [Marinomonas sp.
           MED121]
          Length = 910

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 128/258 (49%), Gaps = 4/258 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +  D+    +          KA+E+K+ F+  +S+ELR+PL  IIG T+++  
Sbjct: 387 HRVEAERSRDDAELERKEAENARAEAVKANEVKSEFLAKMSHELRTPLNAIIGLTEMMHE 446

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             +   +    + ++ +  +   LLNL+NDILD++ ++AG M+L+     L   L +V  
Sbjct: 447 DAIEFDDEDYVEPLDRVLRAGKHLLNLINDILDISKIEAGKMELHRENFNLIMALEDVIA 506

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           SI     + +I+++   +  LG    D+ RL QI   ++SNA+ F+ +G  V L A  +N
Sbjct: 507 SIKPLSDKKSIKLEGDFE-VLGDHFNDQTRLKQILLNLMSNAVKFTDEG-VVTLSARTEN 564

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
                +V ++G  + E+ C  +F  FV        + +G GLGL+I   F  + GG + +
Sbjct: 565 DRLNIAVTDSGIGMNEEQCAGLFQDFVQVDSSSVRKHQGTGLGLAISRKFSRMMGGDIFV 624

Query: 775 SSSDEGVTTINCRIPSKE 792
           +S     +T    IP  +
Sbjct: 625 TSEVGKGSTFTLSIPLNQ 642


>gi|153869726|ref|ZP_01999262.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073807|gb|EDN70737.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 549

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+ ++S+ELR+PL  I+G+T +L   K   L  KQ + ++ I  S   LL L+N
Sbjct: 66  NKAKSEFLANMSHELRTPLNGILGYTQILNHDKR--LTDKQKEGIQIIHRSGEHLLILIN 123

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           DILDL+ ++AG ++++     L   L ++   +  +  + +I +   +   L      D+
Sbjct: 124 DILDLSKIEAGKLEMSPIDFGLPIFLQDIVDLMKMRAEQKSIELMYETLYPLPMGVRTDK 183

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +RL Q+   +LSNA+ F+ KG  V  K   DNG   F V++ G  +P D  +S+F  F  
Sbjct: 184 KRLRQVLLNLLSNAIKFTDKGH-VNFKVIYDNGRARFEVEDTGCGVPADQLESIFLPFQQ 242

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIP 789
                 Q  G GLGL+I +  + + GG + + +     +       +P
Sbjct: 243 MGDQHQQLEGTGLGLAISKQLVTMMGGQLHVETLLGTGSLFWFDISLP 290


>gi|152994636|ref|YP_001339471.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150835560|gb|ABR69536.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 1057

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 10/246 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E   ++  E  ++A+  K+ F+ ++S+E+R+PL  +IG   LL  +K   L   QS   +
Sbjct: 538 ELEQSKAKEEAQEANRAKSEFLANMSHEIRTPLNGVIGCLSLLMNTK---LQPDQSNLAK 594

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               S+  LL+++NDILDL+ ++ G + L+     L  L+ EV      K  E  I +  
Sbjct: 595 ISQQSAESLLDIINDILDLSKIEMGTLVLDKQEFELRALIEEVTNIFVLKAEEKGIVLNS 654

Query: 672 ISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNN 726
            +      +   DR R+ Q+   ++ NA+ F+ +G   +  A      D+      ++++
Sbjct: 655 PTTPIPNVTLFGDRLRIKQVLVNLMGNAVKFTQEGEVALRFAIEPLADDSVILRIVIEDS 714

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F RF        R   G GLGL+I +  I    G + ++S +   ++ 
Sbjct: 715 GIGISKENQSHLFQRFKQADGSTTRKFGGSGLGLAISKEIIQAMDGEIGLNSVEGQGSSF 774

Query: 785 NCRIPS 790
             RIP 
Sbjct: 775 WFRIPL 780


>gi|71907525|ref|YP_285112.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847146|gb|AAZ46642.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 865

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 90/524 (17%), Positives = 188/524 (35%), Gaps = 54/524 (10%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND----ELLEF 358
            + +    +++ L   I + D        N  F + +      +      D     L +F
Sbjct: 203 RERSMLRTLINTLPDLIWLKDSKGVYLACNHRFEQFFGASEPEIVGKTDYDFVDKALADF 262

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
            R+ +    +    +  E    +  + + H++         + ++  ++   G + +  +
Sbjct: 263 FRAHDLAAMEKKAPSVNEE--EITFADDGHRELLIT---TKIPMLDENSQLVGVLGIGHD 317

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            T Q   E       +     ++    G   +         N  + ++            
Sbjct: 318 TTQQKMAEQALENSEQQLRFVLEGAELGFWDWDIAAGTVSRNERWANMLGYS------HD 371

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPL 533
            IR      + +    D    + +I  + +      +    +L        +L+ + +  
Sbjct: 372 EIRQTTQQWTDFIFPDDRSRAWDSINAALEGRASMHRLEYRMLRKDGSIIWILDQAKVMQ 431

Query: 534 PNAQ-----TMLTFVNVTDSVRAERALTEKNEALRK------------------ADEIKN 570
            +AQ        T  ++++       LT+    L K                  A   K+
Sbjct: 432 RDAQGKPLRMCGTHTDISEIKATHEELTQHRRHLEKLVGERTHELTLAKEAAETATIAKS 491

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+E+R+PL  I G T +L+ S    L+ +Q+  ++ I  +   LL ++N ILDL
Sbjct: 492 AFLANMSHEIRTPLNAITGMTHILRRS---GLSPEQTDKLDKIEGAGKHLLEIINAILDL 548

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + ++AG + L    + +  LL  V   ++ +     I I +         + D  RL Q 
Sbjct: 549 SKIEAGKLTLESVPVHVGSLLENVASMLSQRARALGIAINLEPITISSPLLGDPTRLQQA 608

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
                +NA+ F+ +G  + L+   +          F V + G  I  ++   +F  F   
Sbjct: 609 LLNYATNALKFTEQGH-ITLRVKEEAQTEERVTLRFEVSDTGVGIAPNILPKLFGTFEQA 667

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +   R   G GLGL+I +    L GG V +SS +   +T    
Sbjct: 668 DNSTTRKYGGTGLGLAITKKLAELMGGTVGVSSIEGQGSTFWFS 711



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 94/280 (33%), Gaps = 42/280 (15%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
              S+ + L ++L  L+W +D  G  L  N  +++     G    + +G++   F ++  
Sbjct: 203 RERSMLRTLINTLPDLIWLKDSKGVYLACNHRFEQFF---GASEPEIVGKTDYDFVDKAL 259

Query: 250 KRMISSSALEKNF-------CETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVS 296
                +  L            E ++  + G+ +     ++          G  GI  D +
Sbjct: 260 ADFFRAHDLAAMEKKAPSVNEEEITFADDGHRELLITTKIPMLDENSQLVGVLGIGHDTT 319

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           ++      L ++ +    +L    +    +D        N  +  +       +    + 
Sbjct: 320 QQKMAEQALENSEQQLRFVLEGAELGFWDWDIAAGTVSRNERWANMLGYSHDEIRQ--TT 377

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHV-----IVT 405
            +  +F+   ++       + W     ++   +  H+  + +   +G  + +     ++ 
Sbjct: 378 QQWTDFIFPDDRS------RAWDSINAALEGRASMHRLEYRMLRKDGSIIWILDQAKVMQ 431

Query: 406 SNPRGGTI---WMFENLTVQV----DLETKYNTLVKVQGE 438
            + +G  +       +++       +L      L K+ GE
Sbjct: 432 RDAQGKPLRMCGTHTDISEIKATHEELTQHRRHLEKLVGE 471


>gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
 gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
          Length = 377

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 158/367 (43%), Gaps = 21/367 (5%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           Q + I+ +   + +      +  +N  F  L      + + G H+  I +        S 
Sbjct: 11  QEDIIETIPSTIIIVDRRLEVLYANRNFY-LKSFRTEKNAIGMHLSKIFSPVFMQRLNSR 69

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVR 550
              +F+A    FD E+      +         Y I PL  A       ++   ++T+  R
Sbjct: 70  IEKVFSA-GEPFDGEQ------IRYPGGRFYFYRIHPLKEAGGYVSKAVIFIEDITEMTR 122

Query: 551 AERALT-------EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            E  L             L++ D IK+ FV  VS+ELR+PLT I  + ++ +   LG L 
Sbjct: 123 LEEELRDSYIKLENAYAELKELDSIKSEFVSMVSHELRTPLTVINSYIEMFEDGMLGDLT 182

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q + ++ I + +  ++ LVND+LD+  + +  ++L      + +L+  V  S++    
Sbjct: 183 DVQKEKLQLIRSQTDTMIQLVNDMLDILRIGSRRLRLKKELSSMEELIRSVIASLSRLAA 242

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
                I    +        D ++++Q+ S +L+NA+ ++     + +    D  + + S+
Sbjct: 243 LKEHTITFRCERANTLIECDPKKIMQVLSNLLTNAIKYTPDRGQIEVVLGGDAENVLVSI 302

Query: 724 KNNGSSIPEDMCKSVFNR-FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++NG  I E+    +F + FV +  +    G+GLGLSI +  +  HGG +   S     +
Sbjct: 303 RDNGIGIREEDKDRIFEKFFVMSNEKSADIGMGLGLSITKDIVEAHGGRIWFESRFGEGS 362

Query: 783 TINCRIP 789
           T    +P
Sbjct: 363 TFYFTLP 369


>gi|239906948|ref|YP_002953689.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239796814|dbj|BAH75803.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1419

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 140/381 (36%), Gaps = 16/381 (4%)

Query: 417  ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLS 475
              +  +   E   +                V +      R+   N AF  L   +  +  
Sbjct: 892  NEIEDRKAAEDALHRSRLSFSAIFQFSPLAVTISEEQSARMLRVNEAFSHLTGIQAEQAI 951

Query: 476  PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              T          R+ +            +  + E          +        I     
Sbjct: 952  GRTSEE--LGFWERFEDRQQLLIELQVAESVTNRELAFRHADGHRIVGLCSCTVIEAFER 1009

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
               ++  V++T+    E  L    E   +    K+ F+ ++S+E+R+P+  I+G  DLL 
Sbjct: 1010 RCLLMLIVDITERKALESELLAARERAEQGSRAKSDFLANMSHEIRTPMNAIMGMADLLA 1069

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +    L  +Q +YV+    S  IL+ ++NDILDL+ ++AG + L      L + L +  
Sbjct: 1070 DT---PLTPRQKRYVDIFQHSGQILMRVINDILDLSKLEAGKLTLEPEPFDLPEALFQTC 1126

Query: 656  QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                 +  E  + +    D  L      D  RL QI + +L+NA  F+ +G  + L A+ 
Sbjct: 1127 AVFTPQAEEKGLPLFCDLDPGLPRRVYGDPIRLTQIVANLLANACKFTHEGE-IRLSASA 1185

Query: 715  D-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
                        + ++ G  I  D    V + F       QRRG GLGL+I +    L  
Sbjct: 1186 TLLGPSAFLLRLTCRDTGVGIAPDDIARVCDNFFQVGGN-QRRGTGLGLAISKRLTELMQ 1244

Query: 770  GHVSISSSDEGVTTI--NCRI 788
            G +SI S      TI    R+
Sbjct: 1245 GELSIQSILGQGATITATVRL 1265


>gi|110596980|ref|ZP_01385270.1| PAS [Chlorobium ferrooxidans DSM 13031]
 gi|110341667|gb|EAT60127.1| PAS [Chlorobium ferrooxidans DSM 13031]
          Length = 999

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/522 (19%), Positives = 186/522 (35%), Gaps = 44/522 (8%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           ++ +       +L N    I   D +  + + NRS          F  T      L + +
Sbjct: 80  SLRESEHTLASVLVNSPDTIIAVDHDYRIIYVNRSM-------PCFHGTLSVGANLFDHI 132

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP------RGGTI 413
                 P +  +      +F   +         H  N  T+ V     P       G  +
Sbjct: 133 ----IGPCREEYFQTLGTVFETGRLRVIESGFIHSGNAATIEVESRFAPCFQGEKVGFVV 188

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-PAFRSLWKTEEN 472
            +  +++ +  +E      +    E  + L  G  +   + + +L    A RS  +    
Sbjct: 189 ILASDISERKQMELDLKHSLHDL-ERFNRLMVGRELRNIEMKAELEKLRAGRSREEEIRM 247

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                     +       +  +         + S  DE       +          ++I 
Sbjct: 248 HTDGMVSEDKVEDFTLEDHLLAIEKAGLFDFLDSGTDEISRESDLIYRKHQRTALLNLIE 307

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             N               + R   E       A+  K+ F+ ++S+E+R+P+  +IG  D
Sbjct: 308 DANQARNELIETNRKLEESMRLTEEMARNAEAANAAKSQFLANMSHEIRTPMNGVIGMAD 367

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  ++   L++ Q  YVE I+ S   LL ++NDILD + ++A +++L+     L DLL 
Sbjct: 368 LLLETR---LSTDQRNYVEIINGSGRNLLKIINDILDFSKIEARMLELDAIDFDLFDLLE 424

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           E+   +  +  +  + + +I+   L  S   D  R+ QI   ++ NA+ F+ +G  V+LK
Sbjct: 425 EICGVLGLEARDKGLELLLITGFDLPFSLKGDPARIRQILVNLIGNALRFTPEGGEVVLK 484

Query: 712 AARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
                         F+V++ G  I  D  + +F  F         +  G GLGLSI    
Sbjct: 485 VMVQQQTDRNAVIRFNVRDTGIGISADKLQKIFEPFTQADGSNIRKFGGTGLGLSISNDL 544

Query: 765 INLH-GGHVSISSSDEGVTTINC-------------RIPSKE 792
           +    GG + + S      +                 +P KE
Sbjct: 545 VLKMGGGGIHVESEPGSGASFWFDVNLEKQPLQKEYSLPGKE 586


>gi|149908724|ref|ZP_01897385.1| hypothetical two-component sensor [Moritella sp. PE36]
 gi|149808266|gb|EDM68205.1| hypothetical two-component sensor [Moritella sp. PE36]
          Length = 768

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 137/292 (46%), Gaps = 21/292 (7%)

Query: 504 ITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           ++ FD E+  + L+ T  L  D +   ++    NA    T  +        R L      
Sbjct: 186 VSKFDSEQLPQPLELTTRLFDDEI--TTLTTSYNASVKHTRHHY-------RELETAKRQ 236

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K+ F+ ++S+E+R+P+  +IG   LL+   +G    +Q ++V+ + +SS  LL
Sbjct: 237 AEDANLKKSEFLANMSHEIRTPMNGVIGTASLLQEMPMG---REQKEFVDMLYSSSITLL 293

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +L+NDILD + +++G + L  + + L +L  E++ + +    +  I +    D  +    
Sbjct: 294 DLINDILDFSKIESGQLILAKNPLNLFELCKEIESNFSIIARQKQIALVCHIDDNIPDMV 353

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCK 736
           + D  +L Q+ + +LSNA+ F+S G     + L   +DN    +F + ++G  I  +  +
Sbjct: 354 LGDITQLRQVLNNLLSNAIKFTSIGCVRLNIKLMDRKDNNAGIMFQIIDSGIGIAAENQQ 413

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +F +F        R   G GLGL+I  S + L    + + S     +    
Sbjct: 414 KIFEKFQQADGSTTRNYGGTGLGLAICRSIVKLMDSDILVYSKPGKGSRFEF 465


>gi|46484678|gb|AAS98248.1| sensor protein [Listonella anguillarum]
          Length = 848

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 147/371 (39%), Gaps = 26/371 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + +   K   +  +     + V+  DG I   NP+ +               +  +   
Sbjct: 351 QRLSEQEKQFEDLFNFSLSPIIVWSIDGDIIKMNPSAKKY--FMRRNDQQQCILDALKQE 408

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  +   + F  I                 + + V  +++ P+   Q + + +   
Sbjct: 409 LQPKIRLAVEQETFREINVE--------------VGNKVFRWNLSPIIFEQRIESIITQG 454

Query: 547 DSV----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +     A +      +   ++  I+  F+  +S+ELR+PL  I+G + LLK       
Sbjct: 455 QDITTIAEAAKQSRLARQEAEESARIRAEFLAKMSHELRTPLNGILGVSQLLKREIS--- 511

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q + V  + +S   LL ++NDILD + ++ G  ++  S   L ++++ V+       
Sbjct: 512 DHEQLEQVNVLCSSGEHLLAVLNDILDFSKIEQGQFRIQESDFKLVEVISAVESIYRPLC 571

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            E  I   + S+        +D+ RL QI   +L+NA  F+  G   I    ++N     
Sbjct: 572 AEKEIEFSLKSNIPPDMMIHSDQVRLNQILFNLLNNATKFTHHGLISIEFQQKNNHQLFI 631

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           S+ + G  I E     +F  F        R   G GLGL+IV+S I + GG V++ S   
Sbjct: 632 SISDTGIGIREQDLALIFEPFTQVESNTTREYGGSGLGLAIVKSLIEMLGGAVNVKSQFG 691

Query: 780 GVTTINCRIPS 790
             TT +  +P 
Sbjct: 692 VGTTFSVELPL 702


>gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 956

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 168/415 (40%), Gaps = 43/415 (10%)

Query: 412 TIWMFENLTVQVDLETKYNTLV-----------KVQGETIDHLSE-------------GV 447
              +  ++T ++  E +  TL                 T+  LS+              +
Sbjct: 38  LTVIMRDVTDRLRAEQEIRTLNTNLEDQVAQRTARLESTMLALSDEKQKLSLAHAEQRAI 97

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                 G + + N       +  E  L        +      +Y   + ++     + + 
Sbjct: 98  FEMATVGIVLMVNRVVVQCNRNLE-ELFGYAPGELLGQPTRCWYPSEESYEAMGRDVQAL 156

Query: 508 DDERKSLQGTLELLSD------SVLEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKN 559
            D  +     ++++        + +   +   P+ +   +    ++T S  A +A+   +
Sbjct: 157 KDGGRLQNTEMQMVRKDGTMFWARVSARVFATPDHRNAVLGVLEDITPSYEARQAIEHAH 216

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +   +A+  K+SF+ ++S+E+R+P+  I+G + L++ ++   LN +Q  Y+  I +SS  
Sbjct: 217 QQAEEANRAKSSFLANMSHEIRTPMNAIMGMSYLVQKTE---LNERQRGYLNKIQSSSQH 273

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LL ++NDILD + ++AG + + +    L+ +L+ +   +  K     + +    D ++  
Sbjct: 274 LLGIINDILDYSKIEAGKLGIEHIEFELDKVLDNLAGLVGDKAASKGLELVFDVDKQVPL 333

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDM 734
             V D  RL QI     +NA+ F+ +G   + ++   ++       F+V++ G  I E+ 
Sbjct: 334 QLVGDPLRLGQILVNYANNAVKFTERGEIDIRVRVQEESTSHVVLHFAVRDTGIGISEEQ 393

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              +F  F        R   G GLGL+I      +  G V + S+    +T    
Sbjct: 394 KSVLFQSFQQADASTTRKFGGTGLGLAISRQLAQMMEGEVGVDSTFGQGSTFWFT 448



 Score = 37.6 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 67/238 (28%), Gaps = 27/238 (11%)

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
            Q+G                       + + + L    ++       A ++      +  
Sbjct: 4   GQSGRFAACAKDXXXXXXXAEASISHLVLDGQDLLTVIMRDVTDRLRAEQEIRTLNTNLE 63

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
           +    ++ ++   + +  +        ++  ++        I    TV I +   NR + 
Sbjct: 64  DQVAQRTARLESTMLALSD--------EKQKLSLAHAEQRAIFEMATVGIVLM-VNRVVV 114

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             NR+  EL+      L   P+              P + +++    ++ ++        
Sbjct: 115 QCNRNLEELFGYAPGELLGQPTRCW----------YPSEESYEAMGRDVQALKDGGRLQN 164

Query: 390 DTWHL--PNGQTL------HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               +   +G          V  T + R   + + E++T   +         +   E 
Sbjct: 165 TEMQMVRKDGTMFWARVSARVFATPDHRNAVLGVLEDITPSYEARQAIEHAHQQAEEA 222


>gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 916

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT+LL+ S+   L+ +Q  Y+  I
Sbjct: 269 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSE---LSPRQQDYLATI 325

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N++LD + ++AG + L      L DLL +    +A   HE  + +  +I
Sbjct: 326 EKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELISLI 385

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGS 728
                 +   D  RL Q+ + ++SNA+ F+ +G+ V+     D          SV + G 
Sbjct: 386 YRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESVDSAQLRISVMDTGI 445

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + ++  +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 446 GLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 505

Query: 787 RI 788
            +
Sbjct: 506 SL 507


>gi|150005262|ref|YP_001300006.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           vulgatus ATCC 8482]
 gi|149933686|gb|ABR40384.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Bacteroides vulgatus ATCC
           8482]
          Length = 1045

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 137/245 (55%), Gaps = 6/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  + E  L    +   +++ +K++F+ ++S+E+R+PL  IIGF+++L  ++       +
Sbjct: 664 ERKKMEDELLSAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQE---K 720

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+  I +++T+LL L++DILDL+ ++AG ++ +Y  I LND+++E++     +   N 
Sbjct: 721 QEYINIIESNNTLLLQLISDILDLSKIEAGTLEFSYCNIELNDIISEIESVTRYRTESNG 780

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++ V           ++ RL+Q+ + +L+NA  F+S+GS +       + +  F VK+ 
Sbjct: 781 IQLIVQKGLPSCLIRTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLCDKELYFYVKDT 839

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  IP D   S+F RFV      Q  G GLGLSI ++ +   GG + + S +   +T   
Sbjct: 840 GCGIPADKVNSIFGRFVKLNSFVQ--GTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWF 897

Query: 787 RIPSK 791
            IP +
Sbjct: 898 TIPYQ 902


>gi|225570976|ref|ZP_03779999.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM
           15053]
 gi|225160438|gb|EEG73057.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM
           15053]
          Length = 959

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/529 (18%), Positives = 200/529 (37%), Gaps = 40/529 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
                 +  Q     ++ + +   I  F  D++  +   N+   E++    +   ++  +
Sbjct: 158 AEANSEIRRQDNFLTQLYNTVPCGIIQFTTDRSHRIIHANKRAWEIYGYTRSEYWSSVKD 217

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
             +   L    +L          +     Y      KD         +  ++ ++     
Sbjct: 218 PFIF-VLEEERELYRTKVESLKNDGDIVYYDREGRRKDGSQCFVSVAMARLLNADGEEVI 276

Query: 413 IWMFENLTV--QVDLETKYNTLVKVQ---GETIDHLSEGVAV---FGPDGRIKLSNPAFR 464
             +F ++T   +++LE +   L++ Q      +      + V        +I   N   +
Sbjct: 277 QAVFNDITEAKRLELEKEREQLLENQLLRAAVLTGYPLILNVNLTKNSFDKIISDNFICK 336

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD- 523
           +   +  + L    +   I  +    + E    D    I++ F +  + +      L D 
Sbjct: 337 NTSGSNFDHLVKEAY-TTIYPSYREVFRELFDRD---HIMSEFQNGNREIFTEFRQLGDD 392

Query: 524 ---SVLEYSIIPLPNAQTMLT---------FVNVTDSVRAERALTEKNEALRKADEIKNS 571
                L   II + N     T                 R E+ L +  E  + A   K+ 
Sbjct: 393 GDYHWLSVHIIAVDNPYGQDTLSVMLFRVLDEQHAAQARQEQLLRDALEEAKAASNAKSD 452

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDL 630
           F+  +S+++R+P+  I+G + +    +L   +  QS    + I  SS  LL+L+NDILD+
Sbjct: 453 FLSRMSHDIRTPINAIVGMSTI---GQLKIDDRNQSVNCFKKIDDSSRYLLSLINDILDM 509

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++ G M L      L++L+N +   + ++    NI+ +V  +  L  +   D  R+ Q
Sbjct: 510 SKIENGKMALTDEQFDLHELINSITAIVYSQSVFKNIQFEVYCEDSLQQYYLGDALRMNQ 569

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVS 744
           I   +LSN++ F+  G  + L               F V ++G  + ED  K ++  F  
Sbjct: 570 ILMNLLSNSLKFTPAGGMITLHVKESKRRCGYSYLAFQVTDSGKGMSEDFMKRLYQPFEQ 629

Query: 745 --NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                     G GLGLSIV + + L  G +++ S     T  +  IP +
Sbjct: 630 EAADTARNLTGTGLGLSIVYNLVQLMNGTINVESRLGEGTVFSIEIPFR 678


>gi|82703325|ref|YP_412891.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82411390|gb|ABB75499.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 866

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 245/689 (35%), Gaps = 87/689 (12%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT---ETEGIVFQ 234
           +A+     + L     +F+   ++   ++W  +  G   + +  + + T   E EG+ F 
Sbjct: 42  IAQQQRSEQALQQSEELFRGFANAAPAMLWVTEPDGFCSFLSQGWYEFTGQDEEEGLGFG 101

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS--------F 286
                  +  +E  K  + ++   E+ F E       G  +   I+              
Sbjct: 102 WLNAVHPEDREEASKNFLFANERKEEFFLEYRLRRADGVYRW--IIDAGRPRFSLEGQFL 159

Query: 287 GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G AG  +D++    V   L  + E    I  ++   + +   +    + N +   +    
Sbjct: 160 GYAGNLLDITDRKQVEKDLQESREYLRAIFESVGDGLYVMGPDFRCTYLNPAGAAMLGYQ 219

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK---DTWHLPNGQT 399
              L     +D +       +  P   +    +  +    +     +   D +   +G+ 
Sbjct: 220 ARELLGRHLHDII------HHTHPGGGHRAVSESPVALAVREGVPARVDDDVFWRKDGRP 273

Query: 400 LHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLV--KVQGETI-----DHLSEG 446
           + V  + +P        G +  + ++T Q   E K   L+  +     +     +     
Sbjct: 274 VPVTYSVSPIMVDGRPAGAVVAYRDVTEQKQSEEKMAALLGTEKGRAVLLARVANASKSM 333

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTE-----------ENRLSPGTHIRNIAATCSRYYNESD 495
              +  D   ++     RS+                 +      + +  A    Y  + D
Sbjct: 334 NVEWSVDSIARILTEEARSMLGAHQAVTSVTISENWAQAIRAVSLSDKYAHYHAYSEKPD 393

Query: 496 GWDLFAAIITSFDDERKSLQG------------------------TLELLSDSVLEYSII 531
           G  ++  +  +    R + Q                          + L+        ++
Sbjct: 394 GSGIYMEVCRTNCPMRMTQQEMEAHPAWKGFGKHAKDHPPMRGWLAVPLIGHGGKNLGLV 453

Query: 532 PLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIK------NSFVQHVSYELRSPL 584
            L +  Q   T  +    V+     +   E     ++++      + F+  +++ELR+PL
Sbjct: 454 QLTDKTQGEFTEEDEAILVQLAAIASAGIENAYLYEQVREQDRRKDEFLATLAHELRNPL 513

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             +     +LK +       +  +    +      +++L++D+LD++ + +G ++L    
Sbjct: 514 APVRNGLAVLKLAPSMEATVRTRE---IMERQVEHMVHLIDDLLDVSRITSGKVQLKKEW 570

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + +  +L+   +     + EN  R+ + +  +     AD  R+ Q+ S +L+NA  ++SK
Sbjct: 571 VDVRAVLDAALELSRPLIKENQHRLFISNPKESLLLDADPTRMTQVVSNLLNNAAKYTSK 630

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
           G  + L A RD  + I  V++NG  +  +    VF  F          + G+G+GL++V+
Sbjct: 631 GGQIELSAERDGSEVIIRVRDNGVGLTSEALLEVFELFSQVGKTLDRSQGGLGIGLALVK 690

Query: 763 SFINLHGGHVSISSSD-EGVTTINCRIPS 790
             + +H G ++  S      +T   R+P 
Sbjct: 691 RLVEMHNGSITAESQGLGQGSTFVVRLPL 719


>gi|229164415|ref|ZP_04292344.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
 gi|228619065|gb|EEK75962.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
          Length = 588

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 306

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 307 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 366

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 367 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N V         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 426 HRLMKEWVDFTDFFNNVIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 484

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 485 ALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|254513976|ref|ZP_05126037.1| sensor protein GacS [gamma proteobacterium NOR5-3]
 gi|219676219|gb|EED32584.1| sensor protein GacS [gamma proteobacterium NOR5-3]
          Length = 508

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 152/381 (39%), Gaps = 24/381 (6%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            L+       D+ ++G      D  I     A + L + E+ +        N+       
Sbjct: 120 RLLGSWRAFYDNYNDGEWQSDVDDPIPYL-EASQRLKELEQRQAFIAVQRANVIDRTIAL 178

Query: 491 YNESDGWDLFAAI----------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            +        A+I          +   +D  K L+   + L    L+Y I  + +   + 
Sbjct: 179 TDRITVLGFIASIFLTATLGFFLVRYTNDNLKRLKRGTQKLGAGELDYRIEDIDDDGELG 238

Query: 541 TFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +  +S+     RA     +   +  +A+  K+ F+ +VS+ELR+PL  IIG++++L 
Sbjct: 239 DLASAFNSMSDKLRRAIDEEKDAKLSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLH 298

Query: 596 TSKLGSLNSKQSQY---VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
                     + QY   ++ I  S   LL L++DILDL+ ++ G M L        + L 
Sbjct: 299 DELDDETPIDRKQYQNDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVKEQFHPGEALT 358

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
               ++A  +  N   ++      L     D  +  QI   +LSNA  F+++G  + + A
Sbjct: 359 MAVDALAPLLRRNGNVLQCDDFSTLPMINNDAVKFRQIIVNLLSNAAKFTAEG-MIRVSA 417

Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
           +  +       +V + G  +  +    VF  FV           G GLGL+I   F  L 
Sbjct: 418 SFTQATQHLEITVSDTGIGMTPEQQALVFEAFVQADDATSNTYGGTGLGLAICRDFCELM 477

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +S++S     +T    +P
Sbjct: 478 GGQISVASEPGEGSTFTVSLP 498


>gi|16330815|ref|NP_441543.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1653308|dbj|BAA18223.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 674

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 147/320 (45%), Gaps = 12/320 (3%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFD---DERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           +I++          G D    +  SF+   +E +    +LE  +   LE +   L  A +
Sbjct: 346 DISSGDREARAPVLGEDELGILAKSFNLMTNELRESNSSLEKKNQE-LELAQKQLAVANS 404

Query: 539 MLTFVNVTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            L       +   E   +AL   +     A+  K+ F+ ++S+ELR+PL  IIG++++L 
Sbjct: 405 CLEEKVQQRTEELENTVKALELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLI 464

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                  + +    ++ I  S   LL L+ND+LD++ ++AG M+L   T  L +L+  + 
Sbjct: 465 EEAEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGIL 524

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAA 713
            +I+  +  NN +++V    +      D  +L Q    +LSNA  F+  G  S ++ +  
Sbjct: 525 DTISPLLKNNNNKLEVEISLESEEVYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFK 584

Query: 714 RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
            D  D++ F VK+ G  + E+    +F  F        R   G GLGL+I   F  + GG
Sbjct: 585 VDEKDWLSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGG 644

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + ++S     ++   ++P 
Sbjct: 645 DIYLTSEIGVGSSFTIKLPK 664


>gi|172060667|ref|YP_001808319.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171993184|gb|ACB64103.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1240

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 118/253 (46%), Gaps = 6/253 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            + + +  R +  L         A+  K+ F+  +S+E+R+P+  ++G T+LL+ ++   
Sbjct: 536 NMMLDEIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTR--- 592

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L SKQ ++V+ +  S   LL +++DILD + ++AG + L      L+ LL++V   +   
Sbjct: 593 LTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPN 652

Query: 662 MHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                + +    +D        D  RL QI + +L NA+ F+  G   +     D+G  +
Sbjct: 653 ARRKELELVYQRADSVPQRMRGDPVRLRQILTNLLGNAIKFTEHGHVALSAEYSDDGRIV 712

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F + ++G  I  D+   +F  F         +  G GLGL+I      + GG +++ S+ 
Sbjct: 713 FKIADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLGLAISRQLAEMMGGTLALDSTP 772

Query: 779 EGVTTINCRIPSK 791
              +      P +
Sbjct: 773 GKGSVFTVTTPFE 785


>gi|298207043|ref|YP_003715222.1| sensory box sensor histidine kinase/response regulator
           [Croceibacter atlanticus HTCC2559]
 gi|83849677|gb|EAP87545.1| sensory box sensor histidine kinase/response regulator
           [Croceibacter atlanticus HTCC2559]
          Length = 509

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 171/353 (48%), Gaps = 19/353 (5%)

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                +G+I   N    + +K  +N         +IAA      +  +  D F  +    
Sbjct: 16  VFCDLEGKIIDFNNNIFN-FKKGDNIFESHPFFESIAAVI---MDNPNTIDSFPCVHLDI 71

Query: 508 DDERK----SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           + + +    S +     L+ ++++Y+    P  +         +S+ A++ L  KN+ L 
Sbjct: 72  NQQDRICDVSFKKEAHQLTVTLIDYTE---PYKELNTIAQERNESIIAKQMLVLKNQQLE 128

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + +  KN F+ ++S+E+R+PLT I+GF++LLK +   +LN +Q   ++ I+ +S  L   
Sbjct: 129 QQNRFKNKFLANISHEIRTPLTAIVGFSELLKKT---NLNFEQLGLLDVITNASEQLTAT 185

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVA 682
           +ND+LD+A ++ G +K++   I L +++ ++ +    K     I   V  D + L + + 
Sbjct: 186 INDMLDIAKIELGELKISNEEINLKEVILDIAKVYKEKAKSKGINFSVEYDEEILSNTIG 245

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGD--FIFSVKNNGSSIPEDMCKSV 738
           D+ R+ Q+   +L NA+ F++ G+   V+ K+ +        F V++ G  IPED  +SV
Sbjct: 246 DKLRIQQVLGNLLENAIKFTNVGNVSLVVKKSFQRANKIGVDFYVEDTGQGIPEDHLRSV 305

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F  F       +++G GLGL+I ++ +    G + + S     +     +P K
Sbjct: 306 FESFHQVNASEKQKGTGLGLAITKTLVEALEGKIQVESELGKGSQFRVYLPFK 358


>gi|219849092|ref|YP_002463525.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543351|gb|ACL25089.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 556

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 4/285 (1%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           D+  ++ G L+++ D+        L   +     +      R    L   N  L +  ++
Sbjct: 114 DDDGTIVGLLQIVVDTTNRSMTEQLLTQRRNELHLLKDRIQRQNVELARINAGLLRVTKL 173

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+E+R+PLT I+G  D+L+   +G L+ +Q   +  I      LL L+ND L
Sbjct: 174 KDEFLASMSHEVRTPLTAILGLVDVLRAQLVGPLSEEQMGAINGIKQGGQHLLALINDYL 233

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+A ++AG ++L+ + + ++D+   ++  IA       +++    D  +   +AD +RL 
Sbjct: 234 DIAKIEAGRLELDLTPVSVHDICQSLRPMIADMAKRAGLQLVYDLDPTVQVMLADARRLR 293

Query: 689 QIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           QI   +LSNA+ F+  G  V L+     + G   F+V + G  I  +    +F  F    
Sbjct: 294 QILINLLSNAIKFTPAGGKVGLEVRGDAERGAVRFTVWDTGIGISAEDAARLFEPFQQIE 353

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              Q+   G GLGL++V     LHGG VS+ S     +  +  +P
Sbjct: 354 SERQKEVTGSGLGLALVAKLARLHGGSVSLESEVGVGSRFHVTLP 398


>gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
 gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
          Length = 850

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 10/230 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ F+ ++S+E+R+P+  IIG + LL+      +   Q +Y+  ++ SS  LL+L+N
Sbjct: 244 NRKKSEFLANMSHEIRTPMNGIIGLSSLLQEM---DMPKDQKEYINMLNISSLSLLDLIN 300

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADR 684
           DILD + ++AG ++L ++++ L +L  EV+     K  E +I  +   D +     + D 
Sbjct: 301 DILDFSKIEAGRLELEHTSLNLFELNKEVESIFLVKASEKSIAFQCSIDKRIPPMLLGDA 360

Query: 685 QRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            +L Q+ + ++SNA+ F+  G     T +           F V ++G  +  DM  +VF+
Sbjct: 361 TQLRQVLNNLVSNAIKFTHTGYVHLHTQLETETDTETTIRFEVIDSGIGVSVDMHDAVFD 420

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F        R   G GLGLSI    ++L GG + I+S     +T    I
Sbjct: 421 KFQQADGSTTRKYGGTGLGLSICRQIVHLMGGEIKINSEVGKGSTFYFTI 470


>gi|157737045|ref|YP_001489728.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
 gi|157698899|gb|ABV67059.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
          Length = 765

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 5/239 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    E  + A++ K+ F+  +S+ELR+PL  I+GF ++LK S   +   K  + + 
Sbjct: 303 EHQLKIAMEDAKNANQAKSIFLARMSHELRTPLNAILGFANILKKSMNATNQEK--ENLN 360

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LLN++N+IL+L+ ++AG +++N       +L+ E++   A +    N++  +
Sbjct: 361 IIKKSGEHLLNIINEILELSKIEAGKIEINPKNFDFCELIKEIEDIFALRCKSKNLKFTI 420

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                L  F+ AD QRL QI   +L N++ F+++G  + L     N    F VK+ G  I
Sbjct: 421 NQTNNLPKFIKADEQRLRQILINLLGNSLKFTNEG-QIFLNIYSLNNKLFFEVKDTGIGI 479

Query: 731 PEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                + +F  F         ++G GLGL+I +  I L GG + + S     +     I
Sbjct: 480 DLKNQEKIFKPFEQVKLDNYTQQGTGLGLAITKELIALMGGTIYVKSQINKGSEFYFSI 538


>gi|147678721|ref|YP_001212936.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274818|dbj|BAF60567.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 982

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L         A+  K+ F+  +S+E+R+P+  +IG  +LL  +    LN +Q +Y   I+
Sbjct: 448 LERAKREADTANRAKSDFLALMSHEIRTPMHGLIGTAELLMET---PLNEEQREYAAVIN 504

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS +LL +++DILD + ++ G + L  +      +   V    A K     +      D
Sbjct: 505 ESSEMLLAIIDDILDFSRIEEGKLALEEAGFDPRQVEKRVAGLFAPKAGLKGLLFTSAVD 564

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF---IFSVKNNGSS 729
             +   +  D  RL Q+   ++ NA+ F+ +G   + +   +  GD     F V++ G  
Sbjct: 565 AAVPRVLRGDPLRLGQVLLNLVGNAVKFTERGEVSLRVFVEKREGDIAKIRFEVRDTGPG 624

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE +  S+F+ F        RR  G GLGLSI    + L  G +  +S +    T    
Sbjct: 625 IPEGVRSSLFDPFTQADASTTRRFGGTGLGLSICRRLVELMNGEIGFASEEGRGATFWFT 684

Query: 788 IPSK 791
           IP K
Sbjct: 685 IPFK 688


>gi|186686077|ref|YP_001869273.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186468529|gb|ACC84330.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 886

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 131/261 (50%), Gaps = 4/261 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+ +   + V D   AE AL E  EA   A+  K +F+ ++S+ELR+PL++I+   + L+
Sbjct: 623 AEFVALTLEVCDRKSAESALREAKEAAEVANRAKKTFLVNMSHELRTPLSSILEIAEALQ 682

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G++  +Q Q++  + +S   LL L+N IL+L  +++  ++L  +   + +L +   
Sbjct: 683 NEVYGTVTEEQRQFLNTLESSGKNLLELINQILELTDIESSKIELQLAATFIPELCDSSL 742

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
             +     + NI++ V    +L     D +R+ Q+F  +LSNA+ F+  G  V ++    
Sbjct: 743 SFVKNLALQKNIQLSVQIPEELEPIQVDERRIRQVFINLLSNAIKFTHDGGKVWIEVQPN 802

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             N    FSV + G  +  D    +F  F+   +   RR  G GLGL +V+  + LHGG 
Sbjct: 803 STNEYIFFSVVDTGIGMLSDDLFRLFQPFIQVENASTRRSAGTGLGLVMVQKIVELHGGT 862

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           V   S     +    ++P K+
Sbjct: 863 VHAESQLGKGSRFTVKLPWKK 883


>gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 595

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 144/365 (39%), Gaps = 25/365 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                        +  +  G+       RI L N     +     ++   G ++  +   
Sbjct: 253 KDLTEQNAKVDSILKSMQGGLIAVNIRQRIILINTMACDILGIPYHQGILGMNLIKLVRN 312

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   D              E+   Q  L  + + ++     P+   Q       VT
Sbjct: 313 QQINKVLRDSM------------EKNVPQMELINIEEKIIRVYANPIKGHQNENMGGIVT 360

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                          ++K ++++  FV +VS+EL++PLT+I GF D LK   +       
Sbjct: 361 ---------MLDITNIKKLEQMRTEFVSNVSHELKTPLTSIRGFIDTLKDGAVND-PEVA 410

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++ I   +  L  L+N+IL L+ +++     N   + L  +++EV   +     E  
Sbjct: 411 GKFLDIIDIEAERLSRLINEILQLSEIESMKQDRNIEDVFLKPVIDEVFSILQQSAEERK 470

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +       + S  A++ ++ Q+   ++ NA+ ++ +  +V +KA +  G  + SV++ 
Sbjct: 471 VGLHADIAESV-SIQANKDKIKQLLINLIDNAIKYNIENGSVTVKAEQAGGKVLISVRDT 529

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++    +F RF            G GLGLSIV+  +NL+ G + + S     T  
Sbjct: 530 GIGIEKEYLDRIFERFYRVDRGRSSELGGTGLGLSIVKHIVNLYQGRIDVDSDPGKGTEF 589

Query: 785 NCRIP 789
              IP
Sbjct: 590 KIEIP 594


>gi|299147530|ref|ZP_07040594.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298514317|gb|EFI38202.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 422

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/385 (24%), Positives = 191/385 (49%), Gaps = 22/385 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSPG 477
           +V  +      +K     + +++    +   D  +  +N      F         R+   
Sbjct: 29  EVHSKENKENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRFPIQVGGVTKRVGDL 88

Query: 478 THIRN-IAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLP 534
            H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   + +   + 
Sbjct: 89  LHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTPCDVS 148

Query: 535 NAQT----------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            + T          +LT  +VT+   A+R L+ + E    AD++K++F+ ++S+E+R+PL
Sbjct: 149 VSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPL 208

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ L+      S   ++  Y + I+ ++  LL LVNDI DL+ +++G +   Y+ 
Sbjct: 209 NAIVGFSGLM---VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTE 265

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              NDLL E++    TK++ +++ +   +  +     ++R+R++Q+ S +L NAM F+  
Sbjct: 266 FDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTES 325

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G   +  + +   +  F V + G  IP++  K +F+RF+      + +G GLGL++ ++ 
Sbjct: 326 GEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD--REMQGTGLGLTLSQTI 383

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I   GG++ + S     +T +  +P
Sbjct: 384 IQNLGGNLELDSEINRGSTFSFVLP 408


>gi|293394393|ref|ZP_06638692.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM
           4582]
 gi|291423082|gb|EFE96312.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM
           4582]
          Length = 1209

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 174/396 (43%), Gaps = 23/396 (5%)

Query: 412 TIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            +W+F     +  +   +    + +      ++ +   + V    G + +SNPA+R+ + 
Sbjct: 551 LLWIFYLRREVAARHKAQQGLQSQLMFNETLLNSVPIPLYVVDRHGELVMSNPAWRNFFH 610

Query: 469 T--EENRLSPGTHIRNIAA-----TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               E  L    H+ +           R  ++ +        +  FD ER+        +
Sbjct: 611 GEARETGLCGPQHVASPLHQVWQTAAERLLDQHNPHHSHTDTVDIFDGERQ------RTV 664

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               + Y+         +  ++++T+     +AL +  E   +A+  K++F+  +S+E+R
Sbjct: 665 VHYAVTYARSDAHVDGLICAWMDITEHQALAKALHDARENAEQANRAKSTFLATMSHEIR 724

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ IIG  +L   +   + + +    V     S+  L+ ++ DILD+A +++G ++L+
Sbjct: 725 TPVSAIIGLLELAVKTSDQARDREDP--VRVAWESARSLMGVIGDILDMARIESGRLELS 782

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
              +   +LL  V +       +  +R++     +L      D  R+ Q+ S ++SNA+ 
Sbjct: 783 PEWLRTTELLPPVVRVFEGLARQKGLRLRSSLPTQLPYEIFVDPLRIRQVISNLVSNAVK 842

Query: 701 FSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           F+ +G   + L  A           SV+++G  I E   + +F+ +V   +     G GL
Sbjct: 843 FTEQGGIDIDLDLAALPDGRAQLNISVQDSGRGISEAEQQDIFDPWVQAKNGSVTGGSGL 902

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I    +N+ GG +++SS     T ++  IP  +
Sbjct: 903 GLAICAQLVNMMGGEIAMSSRPAQGTRVSFSIPVDQ 938



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 63/172 (36%), Gaps = 10/172 (5%)

Query: 161 GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
           G+     +L +  +  E+A      + L + +   + L +S+   ++  D+ G+++ +N 
Sbjct: 544 GALVLTSLLWIFYLRREVAARHKAQQGLQSQLMFNETLLNSVPIPLYVVDRHGELVMSNP 603

Query: 221 SYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
           +++          G+   + +        +   +R++       +  +TV   +    ++
Sbjct: 604 AWRNFFHGEARETGLCGPQHVASPLHQVWQTAAERLLDQHNPHHSHTDTVDIFDGERQRT 663

Query: 277 ---YKIVRVLNSFGEAGIA---IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              Y +    +     G+    +D+++   +   L    E       A + F
Sbjct: 664 VVHYAVTYARSDAHVDGLICAWMDITEHQALAKALHDARENAEQANRAKSTF 715


>gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1131

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 142/348 (40%), Gaps = 18/348 (5%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           P  + L +  E         +      +         +L A           SL    E 
Sbjct: 346 PVMKLLKRLMETLAVAINSSQTHEQVRALLERVQQQNELVAEQQEELRQTNDSLLRQAEN 405

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYE 579
           L  S  E  +      Q     V   ++V  A ++L  K   L    + K++F+ ++S+E
Sbjct: 406 LQASEEELRVQQEELRQINAELVERNEAVEIARQSLALKARELEVTSQYKSAFLANMSHE 465

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL +++    LL  +K  +L +KQ +Y   I  S   LL L+NDILDLA ++AG + 
Sbjct: 466 LRTPLNSVLILAKLLADNKPDNLTAKQIEYATIIHRSGNDLLTLINDILDLAKIEAGHIT 525

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
           +   ++ +  ++ ++ Q       E  +++       +    + DR R+ QI   +LSNA
Sbjct: 526 VLRESVPVKSIVRDLTQLFTVVAEEKKVQLITKLHESVPAEILTDRLRIEQILKNLLSNA 585

Query: 699 MDFSSKGSTVILK--------------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRF-- 742
             F+ +   + L                 ++      +V + G  IP D  + +F  F  
Sbjct: 586 FKFTPRDGRITLSLSVETSFPKITRQELRKEKSLLAIAVSDTGIGIPADKQQLIFEAFQQ 645

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           V  +   +  G GLGLSI    I   GG +++ S +   +T    +P 
Sbjct: 646 VDGSTSRKYGGTGLGLSISRELIKRLGGEITLHSEEGKGSTFTLWLPL 693


>gi|219670690|ref|YP_002461125.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219540950|gb|ACL22689.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 561

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 14/285 (4%)

Query: 515 QGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRA-------ERALTEKNEALRKA 565
           QG +  LSD   ++   +  L +       +   D  RA       +  L E N  LR+ 
Sbjct: 262 QGEIRDLSDHFEIMTQELQTLYDDLENKVELRTQDLARANDILESQQIQLEEANRRLRED 321

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+  +S+ELR+PLT+II F ++L+ +       +Q    E   A+S +LL ++N
Sbjct: 322 NQYKSDFLAIISHELRTPLTSIIAFAEVLEKASEDKCPKEQKITQEI-RANSQVLLRMIN 380

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +IL++A ++AG  +L    I L D++N V+  I   + + +I+   +    +     DR+
Sbjct: 381 NILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSIQYSSVLHSDVPVIEGDRE 440

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            L +I   +LSNA+ F+ +G  + +  A D    + + +V++NG  I ++    +F +FV
Sbjct: 441 GLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIRKEDQPYIFEKFV 500

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +      Q  G GLGL++ +    LHGG + + S  +  +    
Sbjct: 501 QSDSSIHRQYNGSGLGLALAKELAELHGGWIKVVSELDKGSLFTV 545


>gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
 gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
          Length = 1340

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 150/324 (46%), Gaps = 14/324 (4%)

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            G ++  I A  +R  +  D     A+ + +  +E +S Q  L+L +  + E +   L   
Sbjct: 816  GVNVNTIIA-NARTDSLLDESQRLASELRARSEELQSRQEDLQLSNAELEEKAT--LLAR 872

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V   +  +A + L E+   L  A + K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 873  QNHDIEVKNFEIEQARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQ 932

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L+ KQ +Y   I ++ + LL L+NDILDL+ V+AG M ++   + L D++++V+ 
Sbjct: 933  NPTRNLSPKQVEYAHVIHSAGSDLLQLINDILDLSKVEAGKMDVHVEEVALVDIVDDVQA 992

Query: 657  SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------- 707
            + +    E  +R  V     L +    DR  + Q+   +LSNA+ F+ +GS         
Sbjct: 993  TFSPITAEKGLRFTVAMAPDLPARLRTDRHLVAQVLRNLLSNAVKFTEQGSVDLAIAVSG 1052

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
                        +FSV + G  I  +  + +F  F         +  G GLGLSI     
Sbjct: 1053 AGAGGRAPGQAVLFSVSDTGIGIAAENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVA 1112

Query: 766  NLHGGHVSISSSDEGVTTINCRIP 789
             L GG +   S     +T   ++P
Sbjct: 1113 TLLGGEIQARSEFGRGSTFTLQLP 1136


>gi|299146808|ref|ZP_07039876.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517299|gb|EFI41180.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 1007

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/483 (21%), Positives = 201/483 (41%), Gaps = 41/483 (8%)

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFS 380
           FD+N           E+  ++      +P + +   E L+ A +L   +    W      
Sbjct: 405 FDKNGK------KASEINSVEKYLTLVHPDDRQKFAETLQKAVELGSGV----WDVEYRI 454

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-------NTLV 433
            +K    ++  W    G      +   P      M +N+      E          + LV
Sbjct: 455 DFKGDGMYQ--WWETRGLVETTTLNDAPYKYLFGMTQNIDSYKQTELTLLKNKEIQDALV 512

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +     +++ + G+A    +  ++  N +  S   + E     G          +     
Sbjct: 513 RQNELALNNTNSGLAYITKEYMVQWENISLCSKSLSFEAY-KKGELCYKSTYNRTSPCEN 571

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-----PNAQTMLTFVNVTDS 548
                 F ++ T         Q    L S   +E    P+          ++   +VT+ 
Sbjct: 572 CVMQRAFVSLQTE--------QMKFSLDSAHTVEVFATPVVLEDGSVDGVVIRVDDVTER 623

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +  + L E      ++D++K++F+ ++S+E+R+PL  I+GF++L+  +       +++ 
Sbjct: 624 EKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAG----EEEKAD 679

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I++++ +LL L+NDILDL+ ++AG ++L Y    L++    +  S+  ++   +I 
Sbjct: 680 YIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIV 739

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +  I+         DR R+ QI +  ++NA+ ++SKGS + +  A  +G   F VK+ G 
Sbjct: 740 LTEINPYHCCRVTLDRNRVAQIITNYVTNAIKYTSKGS-IKMGYACKDGGVYFYVKDTGI 798

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I +D    VF RF       Q  G GLGLSI ++     GG V   S     +     +
Sbjct: 799 GIADDKKGKVFQRFEKLDEFAQ--GTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWAFL 856

Query: 789 PSK 791
           P +
Sbjct: 857 PCE 859


>gi|258517266|ref|YP_003193488.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780971|gb|ACV64865.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 679

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 163/377 (43%), Gaps = 16/377 (4%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + ++ K           I  + + +     +G        F+++W   E  L     +  
Sbjct: 305 LHIQAKLKKKESDLQALIKSIDDIIFEVDENGI-------FKNVWTNSEKILLM--PVDQ 355

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKS-----LQGTLELLSDSVLEYSIIPLPNAQ 537
           +     +     D  D++ + I    + ++      +  TL      ++  + I      
Sbjct: 356 VIGNPIQSIIAPDKSDIYLSKIKQVIENQEPDVFEYMMDTLYGRRWYLVRIAPIASELKS 415

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             ++  ++++    E+++    E   KA   K+ F+ ++S+ELR+PL  ++GF+ +L+  
Sbjct: 416 VSVSMRDISERKEMEKSIIAAKEETEKASMAKSQFLSNMSHELRTPLNAVLGFSQILQMD 475

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K   L++ QS+ V+ I  +   LL L+N+ILDLA +++G + +    + +  ++ E    
Sbjct: 476 KSAPLDNSQSESVKEIVKAGNHLLMLINEILDLAKIESGKLNILIEPVKILPIIEETVAF 535

Query: 658 IATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           I     EN+I I +   D      +AD  RL Q+   + SNA+ ++     V     + +
Sbjct: 536 IKPLAKENDIEIAINPRDCMEQYVLADSIRLRQVLLNLFSNAVKYNYNSGKVSFYCEKID 595

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               F++ ++G  IP     ++F+ F           G G+GL+  +  + L GG++++ 
Sbjct: 596 KFIRFNILDSGLGIPSAQLPAIFDPFYRLPITANNVEGTGIGLAAAKQLVELMGGNINVK 655

Query: 776 SSDEGVTTINCRIPSKE 792
           S +   +     IP  E
Sbjct: 656 SQEGQGSHFWFDIPCAE 672


>gi|225388358|ref|ZP_03758082.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme
           DSM 15981]
 gi|225045581|gb|EEG55827.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme
           DSM 15981]
          Length = 972

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 124/673 (18%), Positives = 249/673 (36%), Gaps = 69/673 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR--DQAGDILWANISYKK 224
           R+ + DG  + +    +              L++++   V+    D    ++ AN    +
Sbjct: 249 RMTAEDG-RAAITSVCIDITAQKRAQEEVLNLYNNIPGAVFRCRFDAGFSVIDANDGLFE 307

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST-----LEHGNNKSYKI 279
                   F         +   +  K ++ +   +     T+ T      + G  +   +
Sbjct: 308 FLGYSREEFAALGNRMASVIYPDDLKVLVDTLNRQLATGNTIHTENRLIRKDGTVRWVSV 367

Query: 280 -----VRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQF 330
                  +        + +D++ E  +  +    YE        L+ A         L  
Sbjct: 368 KAQLFRELSGESFFYCVFVDITDEKLLQKRERELYEQELSYFAELSSAGG--STQGRLNL 425

Query: 331 -HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP---EQLNWKTWKENIFSVYKSSE 386
             N+    +   D+A  +   S D+ +E L ++   P   E++     +E + + Y + +
Sbjct: 426 TRNQVESYMATEDVAIASVGNSYDQTIENLAASAVDPVCGEKIRTNLNREKVLADYAAGK 485

Query: 387 T--HKDTWHLPNG-------QTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKVQ 436
              H D      G        +  + V         + +  ++T Q     K    + +Q
Sbjct: 486 ADFHMDFLRRRKGGGAFWGSTSFRLCVNPENNDIITFFYTFDITEQ-----KLREQLLMQ 540

Query: 437 GETID-------HLSEGVA-VFGPDGRI---KLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
              +D       ++  GV  +   D +I    + +  F+   +   +R   G   R   A
Sbjct: 541 IAALDYDVITEINIPAGVHRLISYDEQIKDTIMRDGVFQKEIRRIADRFMDGPAKREYLA 600

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                Y +     L      +F  E +   G+L +    V   S       +  +   +V
Sbjct: 601 HLDFEYMQKQ---LEHQPSYTFSVEMRDNSGSLRVKRIQVFYIS---RELKRVCMARTDV 654

Query: 546 TDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           TD VR E+     L     A  +A+  K+ F+  +S+E+R+P+  IIG + +        
Sbjct: 655 TDVVRQEQRQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMSTIAAQHIGD- 713

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + + +  +  I  SS  LL+L+NDILD++ +++G M L    I   + LN +      +
Sbjct: 714 -DEQVADCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIPTEEFLNGINSICYAQ 772

Query: 662 MHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RD 715
                +  + I+D  L   +V D  +L Q+   ILSNA+ F+S+G  V   A+     ++
Sbjct: 773 AASKGVDYECIADPVLDDYYVGDAMKLQQVLINILSNAIKFTSEGGKVTFSASQRKKTKN 832

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVS 773
           +    F V + G  + E+    +F  F   +        G GLGL+I ++ +++  G ++
Sbjct: 833 DAVLRFIVNDTGVGMSEEFIPHIFEPFSQESTGTTAVYGGTGLGLAISKNIVDMMDGRIT 892

Query: 774 ISSSDEGVTTINC 786
           + S     T    
Sbjct: 893 VRSIKGIGTEFTV 905


>gi|224535375|ref|ZP_03675914.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523016|gb|EEF92121.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 497

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 208/510 (40%), Gaps = 31/510 (6%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+ +E+ + + +    ++     V+I + D    +   N+   +  ++D   +    S  
Sbjct: 4   DIPQEVRIVNAIA--EQLFDVWPVSIVMIDLEDRIWRVNKQMSDELQLDTDIIGK--SVF 59

Query: 354 ELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-- 410
           +LLE ++   N LP     +  +E      +      + +     + +  ++     G  
Sbjct: 60  DLLEVVQDKQNVLP-----RYLQELREGCQRIIPLSSNCFIYEQKRHISFLIQGALIGVY 114

Query: 411 ------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                   +  + N+  +   +   N  +                +  +  + + +P + 
Sbjct: 115 EEERLVRIVLYYRNVLEERTQKRLLNIALSRTQIFQWS-------YDLERNLMIIDPRYF 167

Query: 465 SLWK--TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELL 521
                 T +  L+P      I     +   ++    L   +  +  + R +   G+ E  
Sbjct: 168 EYLGIPTRDYTLTPEEFAYLIHPDDRQSVFDALTLQLDGNLYEAPVEYRLRRDDGSWEWF 227

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                    +     + +   ++       E  L E     R +DE+K+ F+ ++S+E+R
Sbjct: 228 EAQSTYVGQLKEAPYRIVGICMSTQKYKDTEDCLNEALRKARHSDELKSIFLANMSHEIR 287

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GF+ LL    L        ++   I  +S +L+ L++DILDL+ +++  M+ N
Sbjct: 288 TPLNAIVGFSSLLAHGDLDLTKDDIIEFTSLIEKNSQLLMVLISDILDLSKIESNTMEFN 347

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +  I L+ +LNE+  +    M +  + + +   G+  +   D  RL Q+ + +++NA+ F
Sbjct: 348 FCNISLHQVLNEIGSAQRMNM-KKGVELLLDLPGQEITISTDPTRLSQVINNLVNNAIKF 406

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           +S+G+  I      +      V++ G+ + +++ + +F+RF        ++G GLGL+I 
Sbjct: 407 TSEGNICIGYRPATSNRVKIFVEDTGTGMAKEVIEHIFDRFYKGDAF--KQGTGLGLAIC 464

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +      G + ++S+    T     +P K
Sbjct: 465 RTIAERFKGKIEVASTPGKGTRFTIILPLK 494


>gi|29346941|ref|NP_810444.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386399|ref|ZP_06995955.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|29338839|gb|AAO76638.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260776|gb|EFI03644.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 869

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/515 (19%), Positives = 212/515 (41%), Gaps = 45/515 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  + +Q      I H++   +  +D + ++ F NRS +++  +  +          +  
Sbjct: 373 QNKLVEQRNEFDNIFHSIRDGVITYDTDLHIHFTNRSLLKILHLP-SESGGRNYEGMMAG 431

Query: 358 FLRSANKLPEQLNWKTWKE--------NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            +       + + +K  K+         I       E H + +   +G+ + +    +  
Sbjct: 432 SIFKIYYNGQDILYKILKKVGETGQSVIIPDGAFMKEVHSEHYFPVSGEVVPI----HSG 487

Query: 410 G---GTIWMFENLTVQVDLETKYNTLVKV------QGETIDH---LSEGVAV-FGPDGRI 456
           G   G      N++ +   +  ++  V+       Q +   +     +G  V FG D  I
Sbjct: 488 GQITGMALSARNVSDEEMQKRFFDMAVEESSIYPWQFDVESNSFIFPQGFLVRFGYDESI 547

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
                   S+ + E +R+     ++ +     +     +          + + E +  + 
Sbjct: 548 T-------SITRDEMDRMVYPEDLKEMRILFDKTLAGKETNTRLNFRQRNANGEYEWWEY 600

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              ++S    +           +    ++     AE+ + E  +   +AD++K++F+ ++
Sbjct: 601 RSSVISGLTRD------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANM 654

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+DLL  +  G    +  Q++  I+ +  +LL L+NDILDL+ +++G
Sbjct: 655 SHEIRTPLNAIVGFSDLLSDTS-GFTEEEIGQFIATINKNCGLLLALINDILDLSRIESG 713

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   L  LL  V  S    M      +  + D +    V D  RL Q+ + +++
Sbjct: 714 TMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLLRMPDNEKKYLVTDNVRLQQVVNNLIN 773

Query: 697 NAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           NA  F++ GS +      D         V++ G  I E+  + +F RF    +  Q  G 
Sbjct: 774 NAAKFTTYGS-ITFGYEEDEDPEYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GA 830

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI ++ +    G + ++S     T    RIP
Sbjct: 831 GLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRIP 865


>gi|37519624|ref|NP_923001.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35210615|dbj|BAC87996.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 644

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 160/392 (40%), Gaps = 26/392 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVD-LETKYNTLVKVQGETIDH----LSEGVAVFGPDGRIK 457
           +      G  I  F  +  ++   E +    +  +   ++     +++G  +     RI 
Sbjct: 251 LAYPGEIGELITSFNLMAQRLQSYEEQNIEEITAEKAKLETFIATIADGGILLDSSLRIL 310

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L NPA   ++      +  G +I ++     R   E     +   I+   +      + T
Sbjct: 311 LVNPAMLRIFGWGSRVV--GKNILDLLPVGMRAEVEEPLDSVSRNILEQAECRVVLDKRT 368

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L +L   VL      L     +       ++               + ++ K+ F+ +VS
Sbjct: 369 LRVLISPVLAPRGDNLLKGVVLTVQDLSKEA---------------ELNQAKSQFISNVS 413

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL++I  + + +        +S ++++++  +  +  L  LVND+LDL+ +++G 
Sbjct: 414 HELRTPLSSIKSYIETVYEFGDSLDDSTKNEFLKTANQETDRLTRLVNDVLDLSRLESGR 473

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            + ++  + L   + +  ++      +  I +       L   + +   L Q+FS ++ N
Sbjct: 474 -EYHFEPVDLVQPIEQTLRTHRLTARDREIELVSDIATDLPLVLGNYDLLQQVFSNLVGN 532

Query: 698 AMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGV 754
           A+ F+  G  V L A R +       +V + G  I E+  + +F RF    +R     G 
Sbjct: 533 ALKFTEPGGRVTLSARRTDDPAKVRVAVTDTGIGISEEDQRRIFERFFRVENRVHTLEGT 592

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           GLGLSIV++ +  H   V I S     +T   
Sbjct: 593 GLGLSIVDNIVKKHNAQVHIESEVGQGSTFWF 624


>gi|329901629|ref|ZP_08272868.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549058|gb|EGF33662.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 762

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 144/387 (37%), Gaps = 33/387 (8%)

Query: 421 VQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
              D E +Y +L+    G        G  +F  DG   LS            +       
Sbjct: 238 ALRDRERQYRSLIANLPGAAFRRRVGGPMLFVSDGIETLS-------GWPVASFFQGQQD 290

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY----------- 528
           +R +     +   +       A+        R +++  L L   S L+            
Sbjct: 291 LRQLVHPDDQPAVQEVWQQAIAS------SGRYTVEYRLMLRDGSHLQVWESGSVLHADH 344

Query: 529 --SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              I    +        +++   R +           +A+  K+ F+  +S+E+R+P+  
Sbjct: 345 TDHIDHAGDIWVDGVIFDISQQHRIKEQWRAAKTCAEQANAAKSVFLSTMSHEIRTPMNG 404

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG T LL  +    LN++Q ++   I  S+  LL ++NDILD + ++AG + +      
Sbjct: 405 IIGMTGLLLET---PLNTEQREFARIIETSADALLTVINDILDFSRIEAGKLMVESVAFA 461

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           L   +      IA K  +  + +    D  L  FV  D  RL QI   +L NA+ F++ G
Sbjct: 462 LPATVAGCIDVIAGKACDKGLALNCTIDPALPVFVMGDAGRLRQILLNLLGNAIKFTATG 521

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              +       G   F V ++G  I +     +F  F         +  G GLGLSI + 
Sbjct: 522 KVALHVTPVLAGAVRFVVADSGIGIDQKNAAELFIPFHQIDGSITRKYGGTGLGLSITKR 581

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            + L GG +   S      T    +P 
Sbjct: 582 LVELMGGTIGFESVPGQGATFWVELPL 608


>gi|302184841|ref|ZP_07261514.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 779

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 148/370 (40%), Gaps = 6/370 (1%)

Query: 423 VDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           V+ E       +     I+ + + G+     +G I   N     +    E  +       
Sbjct: 258 VERERALRDNEERLRLIIEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSV 317

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                    + +    +       + +  R+   G+    S  +                
Sbjct: 318 FYLQQECPQHPDMALHEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSHDELRGFSKI 377

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S
Sbjct: 378 TRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS 437

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
               Q   + +I  +   LL L+N++LD+A ++AG + L    + L+ +L E    ++  
Sbjct: 438 ----QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLVLEPVSLSSVLEEALVLVSPM 493

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             + NI ++ + +       VADRQRL+Q+   +LSNA+ ++     V ++  +      
Sbjct: 494 AADANIELQPLPNLPDEIGVVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAEQVT 553

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ + 
Sbjct: 554 VSVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDE 613

Query: 781 VTTINCRIPS 790
                  +P 
Sbjct: 614 GCRFILALPL 623


>gi|237748261|ref|ZP_04578741.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
 gi|229379623|gb|EEO29714.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
          Length = 927

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 114/660 (17%), Positives = 237/660 (35%), Gaps = 83/660 (12%)

Query: 198 LFDSLD--FLVWHRDQAGDILWANISYKKNT--ETEGIVFQKAIGESRKLFKEEIKKRMI 253
           +   +    ++ H D+     W + ++ +    ++E  +++   G    L   +   +++
Sbjct: 1   MLHQIPGGTMICHHDERYRFKWVSENFYRMMGFDSESELYEATDGAYASLVHPDDLDKLV 60

Query: 254 SSSALEK-----NFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVND 303
                 K     +  E     ++G+             +      +    D+++ I  + 
Sbjct: 61  EEVHQSKIANVASHFEYRMIKKNGDIIWVHDVGRCFTDLDGDNVTSCFVSDITRRIERDA 120

Query: 304 QLTHTY-----------EILHNLTVAIAI--FDQNRYLQFHNRSFVELWEI--DLAFLAT 348
           Q   T            ++   +   I     D    +   NR   E++    D      
Sbjct: 121 QEKDTRLEISRKTDFLSQLYDTIPCGIVQMSIDSGHRIINANRGAWEIFGYTRDEYLQEK 180

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-- 406
           N     +L+             W   + +  +V   S T++      +G T  + VT   
Sbjct: 181 NDPFLHVLDR---------DKFWIHKRVDHLAVNGGSITYEREAVKKDGSTGWISVTIER 231

Query: 407 --NPRGGTIW--MFENLTV----QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
             N  G  +   ++ +++     Q + E +     +     I    + +       R+ L
Sbjct: 232 LFNFDGIEVLQAVYSDISEVKKLQKEQEQERAIENRSLRAAIYTAYQLII------RVNL 285

Query: 459 SNPAFRSLWK-----TEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERK 512
           +   + +L +       E        +  +       Y ++         +I  FD   K
Sbjct: 286 TQDTYEALSERDYVVNYEPYGYFNELMEEVENGLHPDYRDAYIGTFTRQRMIERFDKGEK 345

Query: 513 SLQGTLELLSDSVLEYSII--------PLPNAQTMLTFVNVTDSVRAERA-----LTEKN 559
            +    + +    + + +         P  +    +    V D  RAE+A     L    
Sbjct: 346 EIYMEYQRMGADGIYHWVSLTGIRIDNPYNDDTLCILLTKVLDEQRAEQAVQEQVLKNAL 405

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            A R A++ K+ F+  +S+++R+PL  IIG + +  +          +  +  I  SS  
Sbjct: 406 SAARMANQAKSDFLSRMSHDIRTPLNAIIGMSTI--SQLKMKEPEVLADCLSKIDVSSRY 463

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+NDILD++ +++G M L+       +L+  +   +  +     +  ++     L  
Sbjct: 464 LLSLINDILDMSRIESGKMALSSERFDFVELIGSINTIVYPQAVAGKLAYQIHQHESLDR 523

Query: 680 FV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNG--DFIFSVKNNGSSIPED 733
           +   D  R+ QI   +LSNA+ F+ +G  + +   ++ R NG     F V + G  +  D
Sbjct: 524 YYEGDTLRINQILMNLLSNAVKFTPEGGKIDVHISESRRSNGFAYIEFRVSDTGIGMSSD 583

Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             K ++  F    +     + G GLGLSIV S + + GG +   S     TT    IP +
Sbjct: 584 FMKRLYLPFEQETDDMARNKVGSGLGLSIVYSLVQIMGGTIDAKSEKNRGTTFTVVIPLR 643


>gi|295398525|ref|ZP_06808559.1| two component sensor histidine kinase [Aerococcus viridans ATCC
           11563]
 gi|294973248|gb|EFG49041.1| two component sensor histidine kinase [Aerococcus viridans ATCC
           11563]
          Length = 618

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 172/389 (44%), Gaps = 29/389 (7%)

Query: 416 FENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+ ++ L+  +     +   + +D +  GV +   D  ++L+NPA   +   EE   
Sbjct: 230 INDLSNELALQEFQITNQTQRMNKLVDAMMLGVVMVDKDHIVRLANPAIYEILGLEEQ-- 287

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIP 532
                         R + E         ++      ++ +   + L    + +L+ +II 
Sbjct: 288 -----------IEGRRFEEVLQSYRLVQMLNQASKTKQKINEEIYLYYPREVILDVNIIH 336

Query: 533 LP--------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           L         + +T     N  DS +    L     ++R  +++++ F+ + S+EL++P+
Sbjct: 337 LSYEEVDAYFDTETNEELTNPNDSEQI-ILLIYDITSIRHLEKVRSDFISNASHELKTPV 395

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T + GFT+ L    +   ++   ++V+ +   S  L +L+ DILDLA ++   ++     
Sbjct: 396 TALQGFTEALLDGAIEDHDTAV-EFVKIMQKESNRLGSLIKDILDLAKIEQDQVQQTTEL 454

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSS 703
           +  ++L+ +V Q ++ +  + +I +    + +   SF  +R R+LQ+ + ++ NA+ +++
Sbjct: 455 LEADELVEDVFQHLSGRAQDKHINLVKDDNSQPDVSFRGERGRILQVLTNLIHNAIIYNN 514

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
               V +  +       F + +NG  IP++    +F RF            G GLGLSIV
Sbjct: 515 PYGFVKVFISEQENMIQFKISDNGIGIPQEDLPRIFERFYRVSKDRSTASGGTGLGLSIV 574

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +   GG + + S     T+    IP 
Sbjct: 575 RNILEHMGGGIEVDSVFGRGTSFTVYIPK 603



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 92/283 (32%), Gaps = 22/283 (7%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  + +Q     +++  + + + + D++  ++  N +  E+  ++          +E+L
Sbjct: 240 QEFQITNQTQRMNKLVDAMMLGVVMVDKDHIVRLANPAIYEILGLEEQIEGRR--FEEVL 297

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSE----------THKDTWHLPNGQTLHVIVTS 406
           +  R    L +    K        +Y   E          ++++     + +T   +   
Sbjct: 298 QSYRLVQMLNQASKTKQKINEEIYLYYPREVILDVNIIHLSYEEVDAYFDTETNEELTNP 357

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAF 463
           N     I +  ++T    LE   +  +      +      +  F     DG I+  + A 
Sbjct: 358 NDSEQIILLIYDITSIRHLEKVRSDFISNASHELKTPVTALQGFTEALLDGAIEDHDTAV 417

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             +   ++     G+ I++I        ++           T   +  + ++   + LS 
Sbjct: 418 EFVKIMQKESNRLGSLIKDILDLAKIEQDQVQQT-------TELLEADELVEDVFQHLSG 470

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
              +  I  + +  +        +  R  + LT         +
Sbjct: 471 RAQDKHINLVKDDNSQPDVSFRGERGRILQVLTNLIHNAIIYN 513


>gi|262171335|ref|ZP_06039013.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
 gi|261892411|gb|EEY38397.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
          Length = 1163

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/363 (24%), Positives = 153/363 (42%), Gaps = 17/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +   +G + L+N A+R                 N    CS  
Sbjct: 508 EQIQWLTELLDAIPSMIYISDYEGDVVLTNAAYRDAMGAC-----HANDCLNNLPDCSFL 562

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSV 549
                    ++ +I          +    ++   +      P+   Q  LT F ++T+  
Sbjct: 563 QLPDSSTSEYSVVIQIPARSCAIGEHYYHVIRRGI----AHPINRRQYYLTLFNDITELK 618

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E AL +      +A E +N F+  VS+ELR+P+  ++G  ++L +    +   +    
Sbjct: 619 ETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSN---ESQLL 675

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +     S+  L   VNDILD + ++A  ++L+ +T  L D L  + +S         +  
Sbjct: 676 LTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDF 735

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            V         V  D  RL QI + +LSNA+ F+ KGS + +   +    F F V + G 
Sbjct: 736 IVNWQPDARLLVQVDALRLNQIITNLLSNALKFTEKGS-IRICVEQSEQHFTFEVTDTGC 794

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + E    S+F  FV       RR  G GLG+SIV + + L GGH+ + S  +  TT+  
Sbjct: 795 GMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVRV 854

Query: 787 RIP 789
            +P
Sbjct: 855 SLP 857


>gi|258621901|ref|ZP_05716931.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
 gi|258585839|gb|EEW10558.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
          Length = 1205

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/363 (24%), Positives = 153/363 (42%), Gaps = 17/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +   +G + L+N A+R                 N    CS  
Sbjct: 548 EQIQWLTELLDAIPSMIYISDDEGDVVLTNAAYRDAMGAC-----HANDCLNNLPDCSFL 602

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSV 549
                    ++ +I          +    ++   +      P+   Q  LT F ++T+  
Sbjct: 603 QLPDSSTSEYSVVIQIPARSCAIGEHYYHVIRRGI----AHPINRRQYYLTLFNDITELK 658

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E AL +      +A E +N F+  VS+ELR+P+  ++G  ++L +    +   +    
Sbjct: 659 ETESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSN---ESQLL 715

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +     S+  L   VNDILD + ++A  ++L+ +T  L D L  + +S         +  
Sbjct: 716 LTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDF 775

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            V         V  D  RL QI + +LSNA+ F+ KGS + +   +    F F V + G 
Sbjct: 776 IVNWQPDARLLVQVDALRLNQIITNLLSNALKFTEKGS-IRICVEQSEQHFTFEVTDTGC 834

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + E    S+F  FV       RR  G GLG+SIV + + L GGH+ + S  +  TT+  
Sbjct: 835 GMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVRV 894

Query: 787 RIP 789
            +P
Sbjct: 895 SLP 897



 Score = 38.4 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +  +   L  T    +  +  I     L D++  +++  D  GD++  N +Y+     
Sbjct: 528 WVTRLRGLLKNTQHVAQLSTEQIQWLTELLDAIPSMIYISDDEGDVVLTNAAYRDAMGA 586


>gi|163747910|ref|ZP_02155243.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161378818|gb|EDQ03254.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 641

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 121/628 (19%), Positives = 234/628 (37%), Gaps = 54/628 (8%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
           +  ++F+ + D+  F VW  DQ G ++++N S +            A             
Sbjct: 7   DAEAMFQSIVDNSPFGVWVVDQDGLVVFSNRSAEALLLHRWTKTTGAQIAELLPALSVSN 66

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFGEAGIAIDVSKEI-------T 300
             +  +     +F   +S     + +  ++   +  ++ G     ++V++          
Sbjct: 67  GGLTITDLKIGDFENIISLPSDDDARYGEVNLSQFKDAEGRPFTIVNVNEITSRVKSWYA 126

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQF--HNRSFVELWEIDLAFLATNPSNDELLEF 358
           + DQ       L    + +  F+ +        + ++ +L  I  A      S+ E  E 
Sbjct: 127 LRDQEERWNLALEGSQIGV--FESDLRTGAGRASDAWYQLLGICDA--NGKDSDREWRER 182

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG----T 412
           +   ++  E++     +     V +S    +      + + +   + VT     G     
Sbjct: 183 IHPDDR--EEVEALDAECIAGRVERSEAKFRMRVGDNDWRWMRSILRVTERDEQGDPVRV 240

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP--------AFR 464
           +    + T                   + +    +AV   DG   L N         A  
Sbjct: 241 LGTMIDTTPLETALALAEARRAGLEVLVSNAPVAMAVMSLDGTFLLLNDPCYSLFGYAAG 300

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L +    +LS    + N+ A     +N           I+  +++     G +  ++  
Sbjct: 301 QLERKNLWQLSGQKTLENLKAEVEALFNGDSS-------ISRVEEKYVRPNGEVIDIAIR 353

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +  Y    + +++ ++  V++T++ R E               +KN FV  VS+ELR+PL
Sbjct: 354 ISIYRPERVSDSRLIVQMVDITETKRLE--------------ALKNDFVATVSHELRTPL 399

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            ++ G   LL          +  + +   S +S  L  +VND+LD   + AG   +  + 
Sbjct: 400 ASVHGALRLLAGVIGEGAPEQVDKLLGMASRNSERLTQVVNDLLDFQKLTAGHFSVEITQ 459

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           +   D++ +         ++ ++ + V +        AD QRL Q+ + +LSNA  FS  
Sbjct: 460 VDAVDIVQQTVVDNEPFANKFSVSVLVDAPEHPVIIHADAQRLKQVLTNLLSNAAKFSDC 519

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G+TV +KA  D   F+ SV N G  I  +  K +F  F   A      R G GLGL+I +
Sbjct: 520 GTTVDVKAGIDEEAFLISVTNRGRGISPEFGKRLFEPFSQQAEHLTRDREGTGLGLAISK 579

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
             +   GG +  SS     TT   R+P 
Sbjct: 580 ELVENMGGAIGYSSQINVQTTFWVRLPL 607


>gi|332702075|ref|ZP_08422163.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552224|gb|EGJ49268.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 675

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 13/252 (5%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  +    LT   E   +A   K+ F+ ++S+E+R+P+  ++G + L       S  +
Sbjct: 260 FWELAQQREELTLAKEEAERASRAKSEFLANMSHEIRTPMNGVLGMSRLALDM---SSEA 316

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +  + +E +  S   L++++NDILDL+ ++AG +   ++   L   L    + +     +
Sbjct: 317 QVRECLELVRQSGENLMDIINDILDLSKIEAGKIDFQHTNFDLGQTLEATFKPLQIMAAQ 376

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
             +  +   D  +    + D  RL Q+ + ++ NA+ F+ KG  + +K A          
Sbjct: 377 RGLAFESDLDPAVPVQLLGDPGRLRQVLTNLIGNAIKFTRKGG-IKVKVALQGQQETESA 435

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSIS 775
             +F V+++G  IP D    +F  F    H    ++ G GLGL+I +  + + GG + + 
Sbjct: 436 CLLFEVRDSGVGIPADKLDRIFESFSQVRHAPDLEQGGTGLGLAISKELVRMMGGGIQVE 495

Query: 776 SSDEGVTTINCR 787
           S     +T +  
Sbjct: 496 SEVGKGSTFSFT 507


>gi|110801444|ref|YP_699043.1| sensory box histidine kinase [Clostridium perfringens SM101]
 gi|110681945|gb|ABG85315.1| sensory box histidine kinase [Clostridium perfringens SM101]
          Length = 571

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 159/382 (41%), Gaps = 43/382 (11%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +  Q+++   ++          +  +  GV  F  D  + + NP  + ++      +
Sbjct: 222 FNYMAEQLEITMERFKNKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEII 281

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPL 533
                            N+   +     ++ +F DE+  ++  +    D  +L+     +
Sbjct: 282 G----------------NKLLDYITDKEVLKAFFDEKDRVEIEVNYNDDPKILKIRKASI 325

Query: 534 PNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            N      T++   ++TD  + E               +++ FV  +S+EL++PLT+I G
Sbjct: 326 INEPEIIGTVVVIQDITDIKKLE--------------NMRSQFVADISHELKTPLTSIKG 371

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F + L+       +  +++++  I   S  L  L+ DIL L  ++     +      +++
Sbjct: 372 FAETLR---YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDE 427

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + +V   +  +  +  + I + +       + D+ +  Q+   ++SN++ ++ KG  V 
Sbjct: 428 EIEKVYMLLNDQAKKKGVEIFLDTHSN-CVLMGDKDKFKQMLLNLVSNSVKYTEKGGKVR 486

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +++   + + I  +++NG  I  +    +F RF         +  G GLGL+IV+  + L
Sbjct: 487 VESYNRDMNLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRL 546

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
             G ++++S     T I   IP
Sbjct: 547 FDGEINVTSELGVGTKIVITIP 568



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           +     +   ++S+    NF + V      +    +I R+  SF      ++++ E   N
Sbjct: 183 ILNPLKELEQLTSTIASGNFHKRVKINSKDD----EIQRLGKSFNYMAEQLEITMERFKN 238

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            Q      IL ++   +  FD++  +   N    +++ I    +        LL+++   
Sbjct: 239 KQ-NGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNK-----LLDYITDK 292

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWMFEN 418
             L    +            +      +  +  + + L +    I+      GT+ + ++
Sbjct: 293 EVLKAFFD------------EKDRVEIEVNYNDDPKILKIRKASIINEPEIIGTVVVIQD 340

Query: 419 LTVQVDLE 426
           +T    LE
Sbjct: 341 ITDIKKLE 348


>gi|253572402|ref|ZP_04849805.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838177|gb|EES66265.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 869

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/515 (19%), Positives = 212/515 (41%), Gaps = 45/515 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  + +Q      I H++   +  +D + ++ F NRS +++  +  +          +  
Sbjct: 373 QNKLVEQRNEFDNIFHSIRDGVITYDTDLHIHFTNRSLLKILHLP-SESGGRNYEGMMAG 431

Query: 358 FLRSANKLPEQLNWKTWKE--------NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            +       + + +K  K+         I       E H + +   +G+ + +    +  
Sbjct: 432 SIFKIYYNGQDILYKILKKVGETGQSVIIPDGAFMKEVHSEHYFPVSGEVVPI----HSG 487

Query: 410 G---GTIWMFENLTVQVDLETKYNTLVKV------QGETIDH---LSEGVAV-FGPDGRI 456
           G   G      N++ +   +  ++  V+       Q +   +     +G  V FG D  I
Sbjct: 488 GQITGMALSARNVSDEEMQKRFFDMAVEESSIYPWQFDVESNSFIFPQGFLVRFGYDESI 547

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
                   S+ + E +R+     ++ +     +     +          + + E +  + 
Sbjct: 548 T-------SITRDEMDRMVYPEDLKEMRILFDKTLAGKETNTRLNFRQRNANGEYEWWEY 600

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              ++S    +           +    ++     AE+ + E  +   +AD++K++F+ ++
Sbjct: 601 RSSVISGLTRD------SLYNILGVCQSIQRYKTAEQEMREARDKALQADKLKSAFLANM 654

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF+DLL  +  G    +  Q++  I+ +  +LL L+NDILDL+ +++G
Sbjct: 655 SHEIRTPLNAIVGFSDLLSDTS-GFTEEEIGQFIATINKNCGLLLALINDILDLSRIESG 713

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   L  LL  V  S    M      +  + D +    V D  RL Q+ + +++
Sbjct: 714 TMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLLRMPDNEKKYLVTDNVRLQQVVNNLIN 773

Query: 697 NAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           NA  F++ GS +      D         V++ G  I E+  + +F RF    +  Q  G 
Sbjct: 774 NAAKFTTYGS-ITFGYEEDEDPEYTRIFVEDTGVGISEEGIRHIFERFYKVDNFTQ--GA 830

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI ++ +    G + ++S     T    RIP
Sbjct: 831 GLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRIP 865


>gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 999

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 140/282 (49%), Gaps = 6/282 (2%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R+S +   E +S   L +  I +  A  +   + +     ++ AL +  E    A+  K+
Sbjct: 475 RRSFELWKETVSQKSLPWQQIEIDAAYQLRDTLLLAALEFSQTALQKAAERAEIANRAKS 534

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  VS+ELR+PL  I+G++ L+  +   SL+ +Q +Y+E I+ S   LL+L+ND+L++
Sbjct: 535 EFLSRVSHELRTPLNAILGYSQLMNRN--TSLSPQQKEYIEIINRSGEHLLSLINDVLEM 592

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689
           + ++AG   LN ++  L  LL+ ++++   K     + +       +    V D  +L Q
Sbjct: 593 SKIEAGQQTLNENSFDLYALLDSIEKTFQLKASAKKLGLIFQRSQDVPQFVVTDESKLRQ 652

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVS-NA 746
           +   +L NA+ F+  G+  +    ++       FSV + G  I E     +F+ FV   A
Sbjct: 653 VLFNLLDNAIKFTQTGNVTLWVTTKEAPCLKIFFSVSDTGPGIAESELSVLFDPFVQTQA 712

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                +G GLGL I   FI L GG +++++     +T +  I
Sbjct: 713 GLKSMQGTGLGLPISRQFIELMGGELTVNTQLGSGSTFSFDI 754


>gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 24/256 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R + E       AD  K+ F+  VS+E+R+P+  ++G   +L  S    L++ Q  Y E 
Sbjct: 626 RQMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDS---GLDANQQDYAET 682

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
             AS   L++L+N++LD A +++G ++L      L   L+ V    + K HE  I + V 
Sbjct: 683 AHASGKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVY 742

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------------- 717
           ISD      + D  R  QI + ++ N++ F+     + +     +               
Sbjct: 743 ISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVKFKKLSCTDSMEE 802

Query: 718 ----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                 + +V++ G  IP +    +F  F+       R   G G+GLSI +  ++L GG 
Sbjct: 803 TSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGE 862

Query: 772 VSISSSDEGVTTINCR 787
           +   S     +T +  
Sbjct: 863 IGFESEPGTGSTFSFT 878


>gi|298481494|ref|ZP_06999686.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272358|gb|EFI13927.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 631

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 130/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          +  +Y
Sbjct: 393 KAYSRLSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PHTEDPVEMREY 449

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILDL+ ++AG      S+I +N  + E++QS+  ++  +++ +
Sbjct: 450 ADIIETNTDLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTL 509

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                     F  D+ RL+Q+ +  ++NA+ F+  G+  +     D     F V + G  
Sbjct: 510 AFTERLPGCLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCG 569

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C+ VF RFV      Q  G GLGLSI  + +   GG + + S +   +T    +P
Sbjct: 570 MSNEQCEHVFERFVKYNPFIQ--GTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLP 627

Query: 790 SKE 792
            ++
Sbjct: 628 YRK 630


>gi|172039664|ref|YP_001806165.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171701118|gb|ACB54099.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 765

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 142/294 (48%), Gaps = 13/294 (4%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAER--ALTEKNEALRK 564
           +R+ L+     L   + E+  + +  AQ    +    N  +    ER   L +   A + 
Sbjct: 327 KRQWLESEKAFL-GQIGEHLAVAIYQAQLYAQVQEQKNTFEQRVIERTQELRDTLVASQA 385

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTILL 621
           A+  K+ F+ ++S+ELR+PLT IIG +  L      S      KQ +Y++ I  S   LL
Sbjct: 386 ANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESTTLPLDKQQKYLQTIQNSGKHLL 445

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGS 679
           +++N+IL+ + + +G   L      L  +   V Q ++ +      N+ + +  + +  S
Sbjct: 446 DMINEILEYSNLQSGKYVLAVREFSLTKVAKNVIQRVSDEAEHRRINLELDLQINQQQDS 505

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           F AD +R+ QI   +L+NA+ F+ +  +V L+  R+N      V++ G  I E+    +F
Sbjct: 506 FYADPERVQQILYHLLNNALKFTPENGSVTLRIWRENNHVSLEVEDTGIGIQEEKIPLLF 565

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             F    +  +R   G GLGL++ +  + LHGG + + S     +T   R+P++
Sbjct: 566 ESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVESIINQGSTFIIRLPNQ 619


>gi|206975846|ref|ZP_03236757.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97]
 gi|217962958|ref|YP_002341536.1| sensory box histidine kinase YycG [Bacillus cereus AH187]
 gi|222098942|ref|YP_002533000.1| sensory box histidine kinase yycg [Bacillus cereus Q1]
 gi|206745940|gb|EDZ57336.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97]
 gi|217065919|gb|ACJ80169.1| sensory box histidine kinase YycG [Bacillus cereus AH187]
 gi|221243001|gb|ACM15711.1| sensory box histidine kinase YycG [Bacillus cereus Q1]
 gi|324329416|gb|ADY24676.1| sensory box histidine kinase YycG [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 613

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|58580142|ref|YP_199158.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622139|ref|YP_449511.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58424736|gb|AAW73773.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366079|dbj|BAE67237.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 769

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 10/252 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                 E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  
Sbjct: 88  QRHGELEQELLRAKQAAEAAMLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLD 144

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   ++  ++SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +       
Sbjct: 145 QRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGR 204

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFI 720
            +R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      
Sbjct: 205 QLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLR 264

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S  
Sbjct: 265 FQVRDTGIGIAPDQQTRLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEP 324

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 325 GRGSTFWFEIPL 336


>gi|182678998|ref|YP_001833144.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634881|gb|ACB95655.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 797

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 106/533 (19%), Positives = 205/533 (38%), Gaps = 48/533 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
               T           L+     +  +D  R   F ++S  E+  +  +           
Sbjct: 233 EAGETCERMRERIDTALNRGRCGLWDWDLARGRVFWSQSMYEILGMSPSE-----QFISF 287

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----- 410
            +   +A   P+  +     E + +    +  H        G  + +   +         
Sbjct: 288 GDI--NALMHPQDGDLAAIAEMLAASKTDAIDHAFRMRNVAGDWVWLRARAELVRDHLSN 345

Query: 411 --GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               + +  ++T    L  +  T      + I+ +SE   ++  D R+ + N  F+    
Sbjct: 346 TPHLVGICVDITEHKVLAERTATADMRLRDAIETVSEAFVLWDADNRLVMCNEKFQRFHN 405

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGW--DLFAAIITSFD-----------DERKSLQ 515
              + L PGT    + A  +    +S     +   A   +++           +ER++  
Sbjct: 406 LANDILVPGTPYMQVMAKGTPPLIQSQIALGERPQAGARTYEARLGDGRWLQINERRTKD 465

Query: 516 G----------TLELL------SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           G          TL+        S+  L  +I  L  ++  L       +  AE+ L +K 
Sbjct: 466 GGYVSVGTDITTLKRHEEQLMESERRLMATIADLRKSRQTLELQAQQLADLAEKYLEQKA 525

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASST 618
           E    A+  K+ F+ ++S+ELR+PL  IIGF++L+     G L + +   Y   I  S  
Sbjct: 526 E-AETANRAKSEFLTNMSHELRTPLNAIIGFSELMGQEPYGPLGSPRYLDYCNDIRQSGQ 584

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++D+LD++ ++AG ++L  +   ++ ++++    +     E  I +   +  +  
Sbjct: 585 YLLGVISDVLDMSRLEAGRVRLEKTDFEIDTVVSKAIAGVKATAEEKEITLLAETTPQ-T 643

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S  ADR  + +I   +L NA+ F+     V ++     G     V++ G  IP      +
Sbjct: 644 SVHADRGAIEKILLILLRNAIKFTPAQGRVTVRTRMIQGALNIYVEDTGMGIPPAPLARL 703

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              F            G GLGL+I  S ++LHGG + I S+    T +  RIP
Sbjct: 704 GRPFEQLHGSMANGMKGSGLGLAIARSLVDLHGGSMRIRSTVGSGTIVLVRIP 756



 Score = 40.7 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 102/338 (30%), Gaps = 44/338 (13%)

Query: 2   MAGMATIGIGKGIEICTLFSCKIAVF-----GTIAGMLLTTIIPIILLIRQRNSLAKKVN 56
           +A + T+G+    ++  +      +         AG+LL +   +++ +    + A    
Sbjct: 172 LATVRTLGLASAGQVALIHPMTEVLSEWRANSWRAGLLLFSTSFVLVAL----ACAYFWQ 227

Query: 57  ETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI-IGQLHQRIDIPQTDTDLLSF 115
            T +  +    +  +       N     +WD       +   Q    I         +SF
Sbjct: 228 ATRAKEAGETCERMRERIDTALNRGRCGLWDWDLARGRVFWSQSMYEILGMSPSEQFISF 287

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI--EGRVSGSCAFLRILS--- 170
            +     H      A           +++A ++ D          V+G   +LR  +   
Sbjct: 288 GDINALMHPQDGDLAAIA--------EMLAASKTDAIDHAFRMRNVAGDWVWLRARAELV 339

Query: 171 ---------LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
                    L GI  ++ E  +  ++ +      +   +++       D    ++  N  
Sbjct: 340 RDHLSNTPHLVGICVDITEHKVLAERTATADMRLRDAIETVSEAFVLWDADNRLVMCNEK 399

Query: 222 YKKNTE------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
           +++           G  + + + +      +          A  + +   +     G+ +
Sbjct: 400 FQRFHNLANDILVPGTPYMQVMAKGTPPLIQSQIALGERPQAGARTYEARL-----GDGR 454

Query: 276 SYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
             +I  R     G   +  D++      +QL  +   L
Sbjct: 455 WLQINERRTKDGGYVSVGTDITTLKRHEEQLMESERRL 492


>gi|114321577|ref|YP_743260.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227971|gb|ABI57770.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 629

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 117/245 (47%), Gaps = 11/245 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  ++  +A+  K+ F+ ++S+ELR+PL  I+GF  L    +       Q + + ++
Sbjct: 276 ELEQARQSAEEANRAKSVFLANMSHELRTPLNAILGFARL--AGQAPQATPDQREQLGFV 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL+L+ND+LD+A +++G   L    + L   L +  +++  +     + + +  
Sbjct: 334 ERNGEHLLSLINDVLDMAKIESGRQTLEEGVVDLPRTLEDAVEALRHRAEGKGLTLTLEV 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------NGDFIFSVKN 725
              L    ++D ++L QI   ++SNA+ ++  G  V+L A R        +   + +V +
Sbjct: 394 AEDLPRHILSDGRKLRQILINLVSNAVKYTDAG-RVVLSARRQSAEPSGGHDGLLLAVAD 452

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP +    VF  FV +   G   G GLGL I   F+ L GG + + S+    +   
Sbjct: 453 TGRGIPVEDQDRVFEPFVQSGRVGTTEGTGLGLPITREFVELMGGEIGLESTSGEGSRFT 512

Query: 786 CRIPS 790
             +P 
Sbjct: 513 VSLPL 517


>gi|303327577|ref|ZP_07358018.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862517|gb|EFL85450.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 780

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 107/485 (22%), Positives = 191/485 (39%), Gaps = 32/485 (6%)

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             L + N++  EL+ +D   L+  P   E+L+  R A   P   N    +   +     +
Sbjct: 33  HELLYMNKAGCELFHVDENALSRRPLCYEVLQ-GRDAP-CPFCTNTYLNESGFYEWEFYN 90

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
              + T+ L + +        N R   I    +++             + +   +  L  
Sbjct: 91  PCLQRTFLLKDRKVRW-----NGRNARIEFATDVSG---YRRTIAGHERERDSILQSLPG 142

Query: 446 GVAVFG-PDGRIKLSNPA-FRSLWKTEENRLSPGTHIRNI---------AATCSRYYNES 494
           G+      DGR  L + A F  +        +   H R +          A       ES
Sbjct: 143 GIVRVDARDGRTVLWHGARFLEMIGYTAEEFAQELHSRCLYVHPDDLARIAALMGRLQES 202

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            G D+    I +   E ++L  T     D+      IP   +  +            ++A
Sbjct: 203 GGTDITEIRIVTRGGEVRTLTTTFS-YQDAASSPDGIPSFYSVGIDITEIRARQELQQKA 261

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +   A R AD  K  F+  +S+++R+PL  I+G  D+  T       +   + ++ I 
Sbjct: 262 LEDACRAARAADRAKTDFLSQMSHDIRTPLNAILGMADIAGTRLDDPRGA--GECLKKIQ 319

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   LLNL+N++LD++ +++G M+L    + L +L+  V     + + E    + V ++
Sbjct: 320 ASGRHLLNLINEVLDMSKIESGQMRLAAEDMELAELVRNVLDVCGSLLKEKGHVLTVRAN 379

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGS 728
                   D  RL Q+F+ +LSNA  ++  G ++            D G F   + +NG 
Sbjct: 380 VAHERVRGDSGRLQQLFTNLLSNAAKYTPAGGSIAFSIDELPSLNTDVGLFECVIADNGI 439

Query: 729 SIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + ED  K +F  F         + +G GLGL I  S + L GG + + S  E  +    
Sbjct: 440 GMSEDFVKHLFEPFKRADDPRICKIQGTGLGLVISRSIVRLMGGGIKVESRPEEGSRFIV 499

Query: 787 RIPSK 791
            +P +
Sbjct: 500 SLPLR 504


>gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
 gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
          Length = 1055

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+    +  +   +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L + Q  Y
Sbjct: 380 QAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---PLTATQRDY 436

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   I+ K  E  I +
Sbjct: 437 VDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDV 496

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVK 724
           +V IS       + D  R+ QI    +SNA+ F+ +G    S +  +         FSVK
Sbjct: 497 QVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVK 556

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I E   K +F  F    +   R   G GLGL+I    + L GG + + S     +
Sbjct: 557 DSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGS 616

Query: 783 TINCRI 788
                +
Sbjct: 617 RFFFEL 622


>gi|307296809|ref|ZP_07576627.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877722|gb|EFN08948.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 766

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 22/371 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
             ++   +    T +  + G+A   P GR  L N  F  +   E   L  G   R I   
Sbjct: 163 AAHSEAARHFAATFEQAAVGLAHCSPQGRFLLVNDRFCEIAGYEREEL-IGLDYRQITHP 221

Query: 487 CSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                +      L    I  F  E++     G L  ++ +V             +    +
Sbjct: 222 ADYEIDARLAGRLLLGEINDFAYEKRYVRKDGGLVWINLTVSLVRDASGEPDFFVCVVED 281

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +     AE A              K  F+ ++S+E+R+P+  I+GF DLL       L  
Sbjct: 282 IGARRSAEMA-----------SAAKTGFLANMSHEIRTPMNGILGFADLLL---GAGLPP 327

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + V+ I+ S   ++ L+NDILDL+ V+AG M++      L   L+     +     +
Sbjct: 328 DQHRQVKMIADSGRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVRVGAEQ 387

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFS 722
             I +       L  +   D  RL Q+   +L NA+ F+S+G  V L+   D     +  
Sbjct: 388 KGIDLIRDIADDLPRTVTGDGLRLRQVVLNLLGNAVKFTSEGH-VALRVHLDGADRLVIV 446

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  I  +   ++F +FV        +  G GLGLSI    + L  G +++ S    
Sbjct: 447 VEDSGPGIAPERQAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTLDSVVGE 506

Query: 781 VTTINCRIPSK 791
            +    R+P +
Sbjct: 507 GSRFILRLPCE 517



 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 22/162 (13%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
                 +VR++      G A         ++   H         V +A           N
Sbjct: 142 TRADLDVVRLMAGPIATGFA-----NAAHSEAARHFAATFEQAAVGLAHCSPQGRFLLVN 196

Query: 333 RSFVELWEIDLAFL-------ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             F E+   +   L        T+P++ E+   L     L E  ++          Y+  
Sbjct: 197 DRFCEIAGYEREELIGLDYRQITHPADYEIDARLAGRLLLGEINDF---------AYEKR 247

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLE 426
              KD   +    T+ ++  ++      + + E++  +   E
Sbjct: 248 YVRKDGGLVWINLTVSLVRDASGEPDFFVCVVEDIGARRSAE 289


>gi|217979578|ref|YP_002363725.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217504954|gb|ACK52363.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 836

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 112/589 (19%), Positives = 224/589 (38%), Gaps = 38/589 (6%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-KSYK 278
             +              I ES+ +      +     SA +            G+  +   
Sbjct: 255 RGFGLIHPRRAAAPDSRIPESKIIVLRSPLEAGAGPSAPQGPEQGADDASISGSRARLAD 314

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI-LHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +   L     A    +  +     D L +  +     L + + +      L F NR  ++
Sbjct: 315 LASRLEQEWPAPPRANPRQSAAEPDPLPNGAKAAFDVLPIGVLVCGNGAAL-FANRFLLD 373

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN-----IFSVYKSSETHKDTW 392
           L      F +         E ++     P    +   ++         V ++   H   W
Sbjct: 374 LLGC-ADFASAK-----FREAIQPVMTRPASAEYLELRDGSGRAVRLRVARAPLPHGPEW 427

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
                    + +   P             + +L  +     +     +D   EGVAV   
Sbjct: 428 LEA------ISLAPQPSAARSG------AEPEL-KRLQREARELNAILDTAMEGVAVIDS 474

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDER 511
            GRIK  N +  +L+  ++  ++ G     + A  SR    +    L +  +   F+D R
Sbjct: 475 AGRIKSLNRSGEALFCYDKAEVA-GEPFTVLVAPESRERALAYFEGLKSNGVAEVFNDGR 533

Query: 512 KSLQGTLE------LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           + L  T +       ++   +  S     + +      ++T   + ER L +      +A
Sbjct: 534 EILGLTRQGGQIPIFMTLGKIGSSAASGIDQRYCALLRDMTHWKKVERELDDARREAERA 593

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLV 624
             +K+ F+  VS+E+R+PL  IIGF +++   + G + N++   Y++ I +S +++++LV
Sbjct: 594 SALKSDFLAKVSHEIRTPLNAIIGFAEVIMEERFGPIGNARYKDYLKDIHSSGSLVMSLV 653

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND+LDL+ ++AG M L++  +  N ++ E    +  +     + I++    +L    AD 
Sbjct: 654 NDLLDLSKIEAGKMDLSFEAVDANRIVTECVSIMQPQASSARVVIRLSLAPQLPHIFADE 713

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           + + QI   +LSNA+ F+  G  VI+  A  D       +++ G  + E   K     F 
Sbjct: 714 RSVRQIVLNLLSNAIKFTQGGGQVIVSTALNDENCAALRIRDTGVGMSEGDLKVALEPFG 773

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC-RIPSK 791
                    G GLGL + ++ +  +    SI S  +  T +    +P++
Sbjct: 774 QAPRARGSGGTGLGLPLTKALVEANRASFSIKSKVQDGTLVEVAFLPAR 822


>gi|160935996|ref|ZP_02083369.1| hypothetical protein CLOBOL_00892 [Clostridium bolteae ATCC BAA-613]
 gi|158440806|gb|EDP18530.1| hypothetical protein CLOBOL_00892 [Clostridium bolteae ATCC BAA-613]
          Length = 1620

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 121/659 (18%), Positives = 238/659 (36%), Gaps = 84/659 (12%)

Query: 186  KKLSNHISVFKVLFDSLDFLVWHRDQAGDIL--WANISYKKNTET---------EGIVFQ 234
            ++L       K L DS+   V      G+++  +AN S+   T              + +
Sbjct: 843  RRLEAAKFELKRLTDSVPGGVVRMHYDGELIIDYANDSFYAMTGCSPEDVRYRFHNRLSK 902

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK----IVRVLNSFGEAG 290
              + E     +++I+     +  L+  +      L     + Y     + +V       G
Sbjct: 903  MILSEDWTQMEQQIESAAAGNGILKYEYRGGRDALSA---RWYSIQATVFQVNGLTELQG 959

Query: 291  IAIDVSK----EITVNDQLTHTYEILHNLTVAIAIF--DQNRYLQFHNRSFVELWEIDLA 344
            I +D+SK    E  +  +  +   +  N+   IA +  D++                 + 
Sbjct: 960  IIMDISKLKDYEQRLQRERDYYNTLYQNMLCGIAQYAYDEDA----------------MD 1003

Query: 345  FLATNPSNDELL------EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH----- 393
            F+  NP +  +L      EF          + +K  +E I  + ++ +   D        
Sbjct: 1004 FIGINPESLRILGYSSLEEFKGQGGPTMLDITYKEDRERIVGMLQTLKKEGDCVSFDHRI 1063

Query: 394  -LPNGQTLHVIVTS----NPRGGTIW--MFENLTVQVDLETKYNTLVKVQG---ETIDHL 443
               +G+   V   S    +P G  +    F + T +     +            ET  ++
Sbjct: 1064 VRSDGEIRWVTGASKLITSPEGKLLIQSTFIDTTEEKRTLEQLKEERDRYDLLYETSYNM 1123

Query: 444  SE-GVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            +  GV        +I   N     L  T+   L      R          +  +      
Sbjct: 1124 AVCGVIQADVKHNKIIAVNKEALQLLGTDAAGLETQLFSREAEKGVPNLSSIGEMMQ--- 1180

Query: 502  AIITSFDDERKSLQGTLELLS-----DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                + ++E K     L         +  ++Y +          TF++ T+     +A  
Sbjct: 1181 ---AAAENEHKRFSHILNFKDRYMSIEGAVDYIMEDKSVRVVQFTFLDNTERELLRQA-E 1236

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
             K E   K+ + K+ F+  +S+E+R+PL  I+G  D            K    +  +  S
Sbjct: 1237 TKLEIATKSSKAKSYFLSKMSHEIRTPLNGIVGMID--SAMLYRHDKEKLLDSLNKLKRS 1294

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            S  L  LV+++LDL+ +++G M +N   + L  LL++V +   T   E  I +       
Sbjct: 1295 SLHLQQLVSEVLDLSKIESGKMDVNMGPVNLQLLLSDVIEEFGTMAKERGIGLTQTGKLH 1354

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGSSIP 731
                  D+ +L +I + ++ NA+ F+     V+L       A     + F V++NG  I 
Sbjct: 1355 HKYVNTDKVKLHEILANLIGNALKFTDSSGVVLLNIEETVIAERESLYTFQVRDNGKGIS 1414

Query: 732  EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  + +F  F   +H       G GLGL+I +S + + GG + + S +   +  +  +
Sbjct: 1415 REDQERIFEAFDQGSHDHLYGNSGSGLGLTICKSLVAMLGGSLKVDSIENAGSEFSFTL 1473



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 103/358 (28%), Gaps = 54/358 (15%)

Query: 292  AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            A   SK   +    +    +L N  V     D++  ++      ++   +  + L     
Sbjct: 721  AEHQSKITELTTAYSDFDNLLVNAEVGALYVDRDMKIRKITPIMLQNTNLLNSDLGRPVY 780

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-- 409
            +   ++            +++++  +I  V ++    +            V +       
Sbjct: 781  HINFID------------SYESFNSDIKKVAETGTIIEREVTDARNSIWLVRIRPYYEKP 828

Query: 410  ---GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR--IKLSNPAFR 464
               GG +    ++T +  LE     L ++     D +  GV     DG   I  +N +F 
Sbjct: 829  EQVGGLLVTMFDITRR--LEAAKFELKRLT----DSVPGGVVRMHYDGELIIDYANDSFY 882

Query: 465  SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-----IITSFDDERKSLQGTLE 519
            ++       +    H R      S  + + +     AA     +   +   R +L     
Sbjct: 883  AMTGCSPEDVRYRFHNRLSKMILSEDWTQMEQQIESAAAGNGILKYEYRGGRDALSARWY 942

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE---------ALRKADEIKN 570
             +  +V + + +       M          R +R     N          A    DE   
Sbjct: 943  SIQATVFQVNGLTELQGIIMDISKLKDYEQRLQRERDYYNTLYQNMLCGIAQYAYDEDAM 1002

Query: 571  SFVQHVSYELRSPLTNIIGFTDL----------LKTSKLGSLNSKQSQYVEYISASST 618
             F+      LR     I+G++ L          +          +    ++ +     
Sbjct: 1003 DFIGINPESLR-----ILGYSSLEEFKGQGGPTMLDITYKEDRERIVGMLQTLKKEGD 1055


>gi|153873106|ref|ZP_02001797.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070428|gb|EDN68203.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 743

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 126/273 (46%), Gaps = 28/273 (10%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  +   A+ AL  K + L  A + K+ F+ ++S+ELR+PL +++    LL  +K G+L+
Sbjct: 10  NQREMETAQVALETKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLAENKKGNLS 69

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKM 662
            KQ +Y   I +S   LL L+NDILDL+ V+AG M++N   + L DL+  V+Q    T  
Sbjct: 70  DKQMEYARTIHSSGAYLLTLINDILDLSKVEAGKMEVNAEPVSLTDLVTMVEQKFRYTDD 129

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------- 714
            ENN+  +V I+         D  RL QI + +LSNA  F+ +G  + L   R       
Sbjct: 130 EENNLAFQVTIAQEVPPIIYTDPLRLQQIINNLLSNAFKFTEQGD-IKLMVQRLELPPTP 188

Query: 715 ----------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
                                  SV + G  IP+D  K +F  F            G GL
Sbjct: 189 LEEGRREDWLPLGDGQQRKMITISVSDTGIGIPKDKQKIIFQAFQQADGTTSRSYGGTGL 248

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSI      L GG + + S +   +     +P
Sbjct: 249 GLSISRQLARLLGGDLQLYSEEGQGSLFTLYLP 281


>gi|22298442|ref|NP_681689.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
 gi|22294622|dbj|BAC08451.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
          Length = 729

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 8/296 (2%)

Query: 503 IITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEK 558
           I    D  R+     +E L+     L  +I        +       +    ER  AL E 
Sbjct: 290 IAHQCDRPRQWQPQEVEFLTHLSQHLSIAIYQAQLYSELQQQKATLEQRVNERTQALREA 349

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             A+  A  IKN F+  +S+ELR+PLT +IG +  L    LG L +KQ +Y+E I  S T
Sbjct: 350 LSAMEAAHRIKNDFLATMSHELRTPLTCVIGVSATLLRWPLGPLTAKQREYLEIIHESGT 409

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK--VISDGK 676
            LL L+N ILDL+  + G  +L+ S   +  L  +  + +  + H + + ++  ++    
Sbjct: 410 HLLELINSILDLSEAELGRSQLHRSAFSIRQLCADCLEVVKPQAHRHQVNLRHQLMIPPT 469

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
              F  D +R+ QI   +LSNA+ F+     VIL+A     + IF V++ G  IP  +  
Sbjct: 470 RDRFWGDYRRIQQILINLLSNAIKFTPAMGEVILRAWWKEDELIFQVQDTGIGIPAHLQS 529

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F +F            G GLGL++ + +++LH G + + S++   +T    +P+
Sbjct: 530 LLFQKFQQLDSSFGRAYTGAGLGLALTKQWVDLHHGWIDVDSTEGKGSTFTVGLPA 585


>gi|117921773|ref|YP_870965.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117614105|gb|ABK49559.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1122

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/514 (18%), Positives = 196/514 (38%), Gaps = 41/514 (7%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
                     +++     I   D    +   N++   +     A L        + E +R
Sbjct: 274 AKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSPAELLGANVKKIVPEAIR 333

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFE 417
             +        +T +  I    +  E      HL     + + +    +G     +    
Sbjct: 334 PHHDGYLARYAQTREAQIIGTGREVEAQHKAGHL---VPVRLSIGHVMQGKAHYFVGFIS 390

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLS---------EG---VAVFGPDGRIKLSNPAFRS 465
           +L+ + ++E +           I ++          EG   V +      I    PA   
Sbjct: 391 DLSQRNEMEQELKINEAKFRSLITNIPGIAYRCKSTEGWPMVFISDAVQNIT-GYPAEDF 449

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                +   S   H  +I    ++    +   +    II +    R   +    +L ++ 
Sbjct: 450 ELPHPKRFFSDLYHPDDIETIYAQAQPPTFSMEY--RIIRADGGVRWLFEHGNYILDETS 507

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E  I            +++T+    E+ L        +A   + +F+ ++S+E+R+P+ 
Sbjct: 508 KEVWIDGF--------LMDITERKEMEQDLVTAKNNAEQAAAARAAFLANMSHEIRTPMN 559

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIGF+D+L  S    L+ +Q + +  I+ S+  LL+L+ND+LD A +D G ++L     
Sbjct: 560 AIIGFSDILLESV---LDLEQQKQLSTINRSAKSLLHLLNDVLDSAKLDKGKLELENRVF 616

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
            L D ++ V  ++  +  +  + ++V     + + F+   +R+ Q+   ++ NA+ F+ +
Sbjct: 617 CLTDEIDTVISTLWLQAKKQRLSLEVDVAPTMAANFIGSPERIRQVLINLIGNAVKFTCE 676

Query: 705 GSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
           G TV ++       +D     F + + G  +  +    VF  F         +  G GLG
Sbjct: 677 G-TVTVRVFPQDTTQDTTKITFEIIDTGIGMSPEQLNRVFEAFAQADASMSRKYGGTGLG 735

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +I +  + L GG ++  S+    +T    IP +
Sbjct: 736 TTISKQLVELMGGELTAESTLGQGSTFRFTIPLQ 769


>gi|300777605|ref|ZP_07087463.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
 gi|300503115|gb|EFK34255.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
          Length = 735

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 137/278 (49%), Gaps = 16/278 (5%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD----EIKNSFVQHVSYE 579
              + SI+ L      +   ++    + +R L  + +   K      + K +F+ ++S+E
Sbjct: 190 RFYDISILVLLILGGSVVGYHILRQFKRQRLLISELDIAEKKALVAAQTKENFLANMSHE 249

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL+ I+GFT+LL+      L+   +++V  I  S   L+ ++NDILDL+ ++AG+M+
Sbjct: 250 IRTPLSGILGFTNLLQKR---PLDETSAEFVSSIQRSGENLMAIINDILDLSKIEAGMMR 306

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
           +      +N L+N V+     +  E  + I    +  +  + V D  RL QI   ++ NA
Sbjct: 307 ITPGIFSINGLVNSVETFFTERAKEKGLTISSTIEPSIPDTLVGDATRLTQILVNLIGNA 366

Query: 699 MDFSSKGSTVILKAA---RDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           + F+ +G  + ++     +   + +  F + + G  I ++    +F RF        R  
Sbjct: 367 IKFTHQG-NITVEIYSKQQTEKEAVLGFKISDTGIGIDKEKLTEIFERFNQGEDSTTRNY 425

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGLSIV+S I L  G++ +SS     TT +  IP
Sbjct: 426 GGTGLGLSIVKSLILLQNGNIEVSSEPGKGTTFHFYIP 463


>gi|153800850|ref|ZP_01955436.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
 gi|124123560|gb|EAY42303.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
          Length = 649

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 99  LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 158

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L + Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 159 LLQDT---TLTATQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 215

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 216 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRI 275

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 276 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 335

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 336 GELQLASQLGQGSCFGFTLPL 356


>gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 528

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 158/381 (41%), Gaps = 22/381 (5%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +  +D E        +    ID   + +        +   N +   ++      +     
Sbjct: 4   SQNIDAEAGLPPADFLLPAIIDSSEDAIVSKNLHSIVTSWNKSAERIFGFTAEEM----- 58

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNA 536
              I    SR +      +    +      ER     T+ +  D     +  +I P+ + 
Sbjct: 59  ---IGQPISRLFPPDRMEEETHILSRITAGERVEHFETIRVRKDGKEIDVSLTISPVRDK 115

Query: 537 -----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                       ++T    A R L + +E L++AD +K  F+  +S+ELR+PLT I+G+ 
Sbjct: 116 TGKIVGASKIARDITGQKDAARRLAQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWI 175

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +LK     +  +  +Q +E I  +  +   L+ D+LD++ ++AG + L+   + L+ ++
Sbjct: 176 QILKEE---ATPADLAQGLEVIERNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVV 232

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           N   Q++       +IR+  +     G  + D+ RL QI   +L+NA+ F+     + + 
Sbjct: 233 NAAVQTVRPTADAKDIRLTSLLADVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQVT 292

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
             R   +    V +NG  I  +    VF+RF        R   G+G+GLSI      LHG
Sbjct: 293 MHRAKSNVEVIVSDNGQGIAPEFLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHG 352

Query: 770 GHVSISS-SDEGVTTINCRIP 789
           GH+ +SS       +    +P
Sbjct: 353 GHLKVSSLGLGKGASFTLSLP 373


>gi|167746498|ref|ZP_02418625.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662]
 gi|167653458|gb|EDR97587.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662]
          Length = 1315

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 123/591 (20%), Positives = 235/591 (39%), Gaps = 67/591 (11%)

Query: 241  RKLFKEEIKKRMISSSALEKNFC--ETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKE 298
            R+ F  E   +      LE+       +   + G    + +  V           D++  
Sbjct: 578  RETFLNEPSLKAFERGDLERKLECFVRLPKDQRGRYVQFNMNMVAAPDSG-----DITGI 632

Query: 299  ITVNDQLTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS--NDE 354
            +TV D         IL  L+V    F  +  L      +  L   + AF        + E
Sbjct: 633  LTVTDITERKISDLILRQLSVTGCDFVVDVDLTA--DRYKLLSCSENAFCVPPHRGRHSE 690

Query: 355  LLEFLRSANKLP---EQLNWKTWKENIFSVYKSSETHKDTWHLPN----GQTLHVIVTSN 407
               ++  +  +P   EQ       E + S  +    +   + + +     +T ++ V++ 
Sbjct: 691  WTAYMLRSRVVPRDREQYKNGLEPEKMMSRLQKDGPYTFAFCISDDKGDIRTKNMTVSAV 750

Query: 408  PR--GGTIWMFENLTVQVD--------------------LETKYNTLVKVQGETIDHLSE 445
                G       ++T  +                     L ++  TL   +   +D+L +
Sbjct: 751  DLRLGRVCLSRSDITDSIREQQGLLHMIAYTFELAAFINLSSRSLTLY-TRESVLDNL-Q 808

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
               V   D  I      F     T E++    T  R I     R   + +G+D     + 
Sbjct: 809  PHYVENYDRTIL----KFVEHHGTSEHKEEARTQFR-IETMTERLREKPNGYDF----LF 859

Query: 506  SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            S++ +       + +L   V   ++  +    T +         R E AL    EA    
Sbjct: 860  SYEGDNGERFKQINVLWGDVNHRTLCLVRADVTEMLTAERQAKKRLEHALASAEEA---- 915

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            ++ K+ F+  +S+++R+P+  I+G T  L ++ LG  + + + Y++ I  SS  LL+L+N
Sbjct: 916  NKAKSDFLSAMSHDIRTPMNAIMGMT-TLASAYLGD-DERVAGYLDKIEVSSRHLLSLIN 973

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADR 684
            DILD++ ++   + LN S + +  LL+++   I ++  E  + + + ++G     F  D 
Sbjct: 974  DILDMSKIERAQITLNLSKVSIPKLLDQLSVMILSQAEEAGLTLSIRAEGVNHEDFYGDP 1033

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIPEDMCKS 737
             R+ QI   +LSNA+ F++KG  V L A     +       + F+V++ G  +PE+    
Sbjct: 1034 LRINQILINLLSNAVKFTNKGGMVELLAEEVETEGSAGRVSYHFTVRDTGIGMPEEFVSK 1093

Query: 738  VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F  F  + +     G GLGLSI +  I+L GG +S+ S     +     +
Sbjct: 1094 IFEPFSRSGNAAHIEGTGLGLSITKGLIDLMGGKISVESWINEGSVFRVEL 1144



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 20/162 (12%)

Query: 301 VNDQLTHTYEILHNLTVAIAIF-DQNRYL--QFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +        E L  +   + ++  +   +   F N SF E       +            
Sbjct: 12  MEKIRREVQEALEMIPGGVCVYLYKEGRIYPVFRNSSFYETLGCFEEYTGEISRETAFQG 71

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN---GQTLHVIVTS---NPRGG 411
             R    LPE       KE +  + +       T  + N   G+   V +     +   G
Sbjct: 72  IHRED--LPEV------KEKVNRLLRKGTALSHTCRIFNDNQGRYRWVHIDGSAEHGEDG 123

Query: 412 TIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           ++    ++ +++ Q+ L+ +     +   + I+ +  GVA++
Sbjct: 124 SVLFYAVYRDVSEQIQLKEELVRSNEQMQDIINLIPGGVAIY 165


>gi|294828133|ref|NP_712722.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293385980|gb|AAN49740.2| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 1017

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 121/533 (22%), Positives = 208/533 (39%), Gaps = 71/533 (13%)

Query: 294 DVSKEITVNDQLTHTY-----------EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           D+++++     L                I+ N    I   D+N  L   N  F  + +  
Sbjct: 229 DITEKVNTRKSLLEQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQ-- 286

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTL 400
             F  +  S       L      PE   +  WKE  +    S E        P  +G  +
Sbjct: 287 -NFYHSEISTGF---NLFQKELPPEIAKY--WKE-FYDRALSGEKVSVARKRPNQDGTFI 339

Query: 401 HVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
              ++  P         G   +  ++T +   E K+  L        +  SE   ++   
Sbjct: 340 FSELSFQPIRNTEYEITGVSAISVDITDKKLAEEKFRLL-------FERSSEPHVLYDDF 392

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDL------FAAIITS 506
           G I   NPA   + +  + +L  G H I     T     NE +   L      F  +   
Sbjct: 393 G-ILECNPATLKMLRCSDKKLVLGKHPIHFSVETEKEKTNELESIALEKGSYTFEWVYKR 451

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALR 563
           F+DE  S            +E ++IP+   Q    +  +  +T+    E +L    E   
Sbjct: 452 FNDEEFS------------VEVTLIPIIIHQKRVFLSVWHEITERKVYEDSLKRAKEIAE 499

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A + K  F+  +S+E+R+PL  +IG   LL+ +    LN++Q +Y++ I +S   LL L
Sbjct: 500 AASKAKTDFLAMMSHEIRTPLNGVIGTVSLLEGTF---LNTEQKEYLDIIKSSGQNLLIL 556

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILDL+ +++G +KL    +    L NEV         E  + ++      +    ++
Sbjct: 557 LNDILDLSRIESGQLKLEIQPVSPEKLTNEVVNLFRPMAEEKGLVVESEVSFNVPNWIIS 616

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKS 737
           D  RL Q+ + ++ N++ F+ KG  + L         D    IF VK+ G  I E+  + 
Sbjct: 617 DPYRLRQVLTNLIGNSIKFTEKG-KIHLSVEAEKFPNDKLRLIFHVKDTGIGIAEEKLEL 675

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F        R   G GLGL+I +    L  G +++ S     +  +  I
Sbjct: 676 LFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEITVKSQVNSGSEFSLSI 728


>gi|291519879|emb|CBK75100.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens
           16/4]
          Length = 881

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 160/375 (42%), Gaps = 32/375 (8%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           Y T+  +  +    L  G+ VF  +  + LSN     L   ++        +R I    S
Sbjct: 234 YITINSISKDIFSTLGTGLLVFDTNYHLNLSNDYANKLLGLDKEP--QRIRLREIFKLRS 291

Query: 489 ----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
               R ++++    +    +T+      ++ G + L++     +S     N Q M   + 
Sbjct: 292 GEPMRMFDKAQEGIILDYRLTA------NVTGKVTLVN-----FSCKMDRNNQPMCYILV 340

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            TD     R +    +  + A+  K++F+ ++S+E+R+P+  I G  +L+        + 
Sbjct: 341 ATDLTEENRLI----QEAQSANAAKSNFLSNISHEIRTPINVISGMNELILRECK---DE 393

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              +Y E I  +S  L +L+ND+LD + +++G ++L  +   +  LLN+          +
Sbjct: 394 SIIKYAENIDVASRNLSSLINDVLDFSKIESGKIELISTDFNIGSLLNDGYNLFLALAQQ 453

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
                 +  D    S +  D  RL QI + ++SNA+ ++     + +       +     
Sbjct: 454 KMQSFALECDPNTPSVLSGDEVRLKQILTNLISNAVKYTPDRGAINVTVTSKELENETIM 513

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            I +V +NG  I  +   ++F  F           +G GLGL+I ++ ++L  G +++ S
Sbjct: 514 LIINVTDNGIGIRTEDIPNLFQNFQRFELTKNRSIQGSGLGLAITKNLVDLMHGTINVDS 573

Query: 777 SDEGVTTINCRIPSK 791
           +    ++    +P K
Sbjct: 574 TYGKGSSFTVNLPFK 588


>gi|45657308|ref|YP_001394.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600546|gb|AAS70031.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 1017

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 121/533 (22%), Positives = 208/533 (39%), Gaps = 71/533 (13%)

Query: 294 DVSKEITVNDQLTHTY-----------EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           D+++++     L                I+ N    I   D+N  L   N  F  + +  
Sbjct: 229 DITEKVNTRKSLLEQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQ-- 286

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTL 400
             F  +  S       L      PE   +  WKE  +    S E        P  +G  +
Sbjct: 287 -NFYHSEISTGF---NLFQKELPPEIAKY--WKE-FYDRALSGEKVSVARKRPNQDGTFI 339

Query: 401 HVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
              ++  P         G   +  ++T +   E K+  L        +  SE   ++   
Sbjct: 340 FSELSFQPIRNTEYEITGVSAISVDITDKKLAEEKFRLL-------FERSSEPHVLYDDF 392

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDL------FAAIITS 506
           G I   NPA   + +  + +L  G H I     T     NE +   L      F  +   
Sbjct: 393 G-ILECNPATLKMLRCSDKKLVLGKHPIHFSVETEKEKTNELESIALEKGSYTFEWVYKR 451

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALR 563
           F+DE  S            +E ++IP+   Q    +  +  +T+    E +L    E   
Sbjct: 452 FNDEEFS------------VEVTLIPIIIHQKRVFLSVWHEITERKVYEDSLKRAKEIAE 499

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A + K  F+  +S+E+R+PL  +IG   LL+ +    LN++Q +Y++ I +S   LL L
Sbjct: 500 AASKAKTDFLAMMSHEIRTPLNGVIGTVSLLEGTF---LNTEQKEYLDIIKSSGQNLLIL 556

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILDL+ +++G +KL    +    L NEV         E  + ++      +    ++
Sbjct: 557 LNDILDLSRIESGQLKLEIQPVSPEKLTNEVVNLFRPMAEEKGLVVESEVSFNVPNWIIS 616

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKS 737
           D  RL Q+ + ++ N++ F+ KG  + L         D    IF VK+ G  I E+  + 
Sbjct: 617 DPYRLRQVLTNLIGNSIKFTEKG-KIHLSVEAEKFPNDKLRLIFHVKDTGIGIAEEKLEL 675

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F        R   G GLGL+I +    L  G +++ S     +  +  I
Sbjct: 676 LFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEITVKSQVNSGSEFSLSI 728


>gi|47568664|ref|ZP_00239361.1| histidin [Bacillus cereus G9241]
 gi|47554652|gb|EAL13006.1| histidin [Bacillus cereus G9241]
          Length = 613

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|89897563|ref|YP_521050.1| hypothetical protein DSY4817 [Desulfitobacterium hafniense Y51]
 gi|89337011|dbj|BAE86606.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 564

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 14/285 (4%)

Query: 515 QGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRA-------ERALTEKNEALRKA 565
           QG +  LSD   ++   +  L +       +   D  RA       +  L E N  LR+ 
Sbjct: 265 QGEIRDLSDHFEIMTQELQTLYDDLENKVELRTQDLARANDILESQQIQLEEANRRLRED 324

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+  +S+ELR+PLT+II F ++L+ +       +Q    E   A+S +LL ++N
Sbjct: 325 NQYKSDFLAIISHELRTPLTSIIAFAEVLEKASEDKCPKEQKITQEI-RANSQVLLRMIN 383

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +IL++A ++AG  +L    I L D++N V+  I   + + +I+   +    +     DR+
Sbjct: 384 NILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSIQYSSVLHSDVPVIEGDRE 443

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            L +I   +LSNA+ F+ +G  + +  A D    + + +V++NG  I ++    +F +FV
Sbjct: 444 GLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIRKEDQPYIFEKFV 503

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +      Q  G GLGL++ +    LHGG + + S  +  +    
Sbjct: 504 QSDSSIHRQYNGSGLGLALAKELAELHGGWIKVVSELDKGSLFTV 548


>gi|126659478|ref|ZP_01730611.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
 gi|126619212|gb|EAZ89948.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
          Length = 2001

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 10/260 (3%)

Query: 536  AQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            A  +       +    ER   L E  +    A++ K+ F+ ++S+ELR+PL  I+G+  +
Sbjct: 1514 AHQLKQINQELEQRVEERTAELAEAKQKAETANQAKSEFLSNMSHELRTPLNGILGYAQI 1573

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            LK     +L S Q+Q ++ I  S   LL L+NDILDL+ ++A  M++    I     L+ 
Sbjct: 1574 LKRD--SNLTSFQTQGLKIIHESGQHLLTLINDILDLSKIEARKMEIYPKGIHFPSFLDS 1631

Query: 654  VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--- 709
            V   I  +  + NI  K   D +L     AD +RL Q+   +L NA+ F+ +G       
Sbjct: 1632 VAGIIKMRAVDKNILFKSEFDSQLPLGIQADEKRLRQVLLNLLGNAIKFTDRGQVTFRVN 1691

Query: 710  -LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINL 767
             ++   +     F + + G  I  +    +F  F        +  G GLGL+I +  + L
Sbjct: 1692 AIQTEANQAQIRFEIVDTGVGITPEQATKIFQPFEQIGDIERRAEGTGLGLAITQQLVEL 1751

Query: 768  HGGHVSISSSDEGVTTINCR 787
             G  + +SS+    +T +  
Sbjct: 1752 MGSELKVSSTVGEGSTFSFE 1771


>gi|77919545|ref|YP_357360.1| two component hybrid histidine kinase/sensor response regulator
           [Pelobacter carbinolicus DSM 2380]
 gi|77545628|gb|ABA89190.1| two component hybrid histidine kinase/sensor response regulator
           [Pelobacter carbinolicus DSM 2380]
          Length = 833

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 130/296 (43%), Gaps = 19/296 (6%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++       + L+     L + VL+         +T        +  +    L +  
Sbjct: 240 FNHMLEQLASRDQQLERYRYHLEEQVLQ---------RTQELHETNEELQKTVDKLAQAR 290

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A   A+  K+ F+ ++S+E+R+P+  +IG  +LL  +    L+  Q +    I +S   
Sbjct: 291 QAAETANHAKSRFLANMSHEIRTPMIGVIGVAELLSGT---PLSDHQRELAHMIHSSGES 347

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           LL ++NDILD + ++AG + +      L D++ E    IA    +  + +   I  G   
Sbjct: 348 LLKVLNDILDFSKIEAGRLVVERVPFNLVDVVEEPLSLIAKNAQDKKVELICRIQPGTPV 407

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---GDFIFSVKNNGSSIPEDM 734
           S + D  RL QI   +L NA+ F+S+G   V +    +N         V++ G  I  + 
Sbjct: 408 SLLGDPARLRQIVFNLLGNAVKFTSEGEISVRIGCRDENCASASIFLEVRDTGIGIDREA 467

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +++F+ F        R   G GLGL+IV   ++L  GH+ + S     +   C I
Sbjct: 468 QQAIFDAFSQADSSTTRHYGGTGLGLAIVRQLLDLMRGHIHLESELGQGSVFTCTI 523


>gi|330878543|gb|EGH12692.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 775

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 146/368 (39%), Gaps = 6/368 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G +   N     +    E  +        
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVF 318

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 319 YLPQECPQHPDMALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKIT 378

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 379 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 437

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++   
Sbjct: 438 ---QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 494

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI ++ +         +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 495 ADGNIELEELPHLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++    
Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEG 614

Query: 782 TTINCRIP 789
                 +P
Sbjct: 615 CCFTLALP 622


>gi|239997233|ref|ZP_04717757.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii ATCC 27126]
          Length = 927

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 149/283 (52%), Gaps = 10/283 (3%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADE 567
           R S    L+ ++D  +E++     + Q ++   +      A   + +L ++   L + D+
Sbjct: 495 RNSFDMYLQSVADESVEWT----EDDQLIIEGFDHLFIPYALSLKASLDKQISKLEELDK 550

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+ELRSPL +I+G+TDL           + +  +  I  +++    L+NDI
Sbjct: 551 AKDQFLASISHELRSPLNSIVGWTDLALMDVGNV--DRMTDALGVIKRAASTQAALINDI 608

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ + +G MKL+  ++ +   ++EV +S        NI++ +  +      + D  R+
Sbjct: 609 LDLSRIISGTMKLSTHSLNIAGSISEVAKSFEAGFASKNIQLSINCEDDHTQILGDNLRI 668

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+ + +LSNA+ F+SKG TV ++  R++ +++F VK+NG  +  +    VF RF    +
Sbjct: 669 KQVINNLLSNALKFTSKGGTVHVRGRREHSNYLFRVKDNGKGMTREQLSHVFERFYQGKN 728

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
              + G+GLGLSIV+S + +HGG +   S      TT    +P
Sbjct: 729 EHNKHGLGLGLSIVKSLVEMHGGEIYAESDGPNTGTTFYVTLP 771


>gi|189909957|ref|YP_001961512.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774633|gb|ABZ92934.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
          Length = 912

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 121/237 (51%), Gaps = 10/237 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L KA+ +K+ F+ ++S+E+R+P+  ++G   LL+ +   +++ +Q  Y++    S   LL
Sbjct: 526 LEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEET---NVDIEQKDYLDNAKKSVLSLL 582

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGS 679
            ++NDILD++ ++   +++  +   +  L  +++    + + + N+++ +    +     
Sbjct: 583 TIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDKNLKLNLDFTIEDTNLH 642

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKS 737
            + D  RL Q+ + ++SNA+ F+  G  + L    D       F V + G  I E+  K 
Sbjct: 643 ILVDENRLRQVLNNLISNALKFTPSG-IITLAVKLDPSRNFIEFCVHDTGIGISEENIKR 701

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F+RFV       +R  G GLGL I +  +NL GG + + S     +T    IP  +
Sbjct: 702 LFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILNIGSTFKFTIPFHQ 758


>gi|15887959|ref|NP_353640.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15155563|gb|AAK86425.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 1275

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 113/582 (19%), Positives = 224/582 (38%), Gaps = 21/582 (3%)

Query: 221  SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
            + +   +        A  E+ +  +E+                              ++V
Sbjct: 699  AAETAKDASSDTGNDA--ETTEPVEEDDLFADYVRGEQPAPVRAPTDEPTSAEK---QVV 753

Query: 281  RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
                       A  VS  +     L  T E L  + VA+ +   +  L   N  F+ L  
Sbjct: 754  TTDEKPVADIAASMVSPPVRTPSAL--TAETLDQMPVALLVHAGD-RLIHANPDFLRLTG 810

Query: 341  I-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK-SSETHKDTWHLPNGQ 398
               L  L      + LL+  +    +P+             +    +      W      
Sbjct: 811  YTSLTELEEVGGLEALLQR-QELENMPDNEGGMVVVSAENDIIPVKARLQSIRWEETKAL 869

Query: 399  TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGR 455
             L ++         +   EN     +  +  + L   ++     ++  ++GV + G DG 
Sbjct: 870  MLSLVPLEEKPAAVMAANENTAENAEAGSNLSLLQGEMEELHSILETATDGVVLLGDDGE 929

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            I+  N +  +L+  +   ++ G     + A  S+         L    + S  ++ + + 
Sbjct: 930  IRSLNRSASALFNYDNGEIA-GKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGREVI 988

Query: 516  GTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G         L  +I  L ++        ++T   R E  L     A   A+  K  F+ 
Sbjct: 989  GREASGGFLPLFMTIGRLKSSHGYCAVIRDITQWKRTEEELRNAKRAAETANAHKTDFLA 1048

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATV 633
             VS+E+R+PL  IIGF+D++ T + G + N +  +Y   I  S   +L++VND+LD++ +
Sbjct: 1049 RVSHEIRTPLNAIIGFSDMMATERFGPIGNPRYVEYANDIGRSGRHVLDIVNDLLDISKI 1108

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
            +AG M +++  + LN+ + E    +  + +   + I+      +   VAD + + QI   
Sbjct: 1109 EAGQMDVDFIAVPLNETVAEAVSLVQPQANNQRVIIRTALAQSVPQIVADLRSIKQIVLN 1168

Query: 694  ILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            ILSNA+ F+  G  +++  A + NG     +++ G  +     +     F   A  G+R 
Sbjct: 1169 ILSNAIRFTPSGGQIVVSTAYEANGSVSLRIRDTGIGMTRAELEQAMKPFRQVASSGKRV 1228

Query: 752  --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               G GLGL + ++ ++ +  + SI+S+    T +    PS+
Sbjct: 1229 RGDGTGLGLPLTKAMVDANRANFSITSTPNEGTLVEITFPSQ 1270



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 79/268 (29%), Gaps = 38/268 (14%)

Query: 199  FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM------ 252
             D +   +        ++ AN  + + T    +   + +G    L + +  + M      
Sbjct: 783  LDQMPVALLVHAGD-RLIHANPDFLRLTGYTSLTELEEVGGLEALLQRQELENMPDNEGG 841

Query: 253  ---ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI----------AIDVSKEI 299
               +S+          + ++     K+  +  V      A +          A   S   
Sbjct: 842  MVVVSAENDIIPVKARLQSIRWEETKALMLSLVPLEEKPAAVMAANENTAENAEAGSNLS 901

Query: 300  TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP--------S 351
             +  ++   + IL   T  + +   +  ++  NRS   L+  D   +A  P        S
Sbjct: 902  LLQGEMEELHSILETATDGVVLLGDDGEIRSLNRSASALFNYDNGEIAGKPFVTLFAHES 961

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
               +L++L               +E I               LP   T+  + +S+   G
Sbjct: 962  QRAVLDYLSGLANNGVASVLNDGREVIGREASGGF-------LPLFMTIGRLKSSH---G 1011

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGET 439
               +  ++T     E +     +     
Sbjct: 1012 YCAVIRDITQWKRTEEELRNAKRAAETA 1039


>gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 867

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 166/380 (43%), Gaps = 21/380 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             E++     +   + ++ + E   +    +GRI  ++P++ ++W      L        
Sbjct: 348 QRESQIKESEERFRQLVESIHEFYWISELANGRIIYASPSYEAIWGRSRQSLHDNPETFF 407

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +A    +  +     + F+A+     +  +  + TL    +  +     P+ + +     
Sbjct: 408 LAI---KPEDRLSVIEAFSALRVEGIEVDEEFRITLPDGGERWIRAQAFPVRDERGGSVR 464

Query: 543 V-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                 ++T+    ++AL E   +   A++ K  F+ ++S+ELR+PL  I+G   L + +
Sbjct: 465 QAGVAEDITERKATQQALMEAKHSAEAANQSKTEFLTNISHELRTPLNGILGMLQLTRET 524

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L  +Q++Y++   +SS +LLN++NDIL++A ++AG + L  +    N++L  + + 
Sbjct: 525 R---LKPEQAEYIDTAISSSKVLLNVINDILNIAQIEAGRLTLLDAPFSTNEVLETIYRF 581

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------L 710
                    + + +  +     + V D  R+ QI   +L N++ F+ +G   +      +
Sbjct: 582 FRHSTEAKGVELTMDMEPGFPKTLVGDEVRIRQILFNLLGNSVKFTDQGHISVHASILPV 641

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
                    +  +K+ G  IP D    VF  F         Q +G GLGL IV S +   
Sbjct: 642 TPRPGRVTVLLVIKDTGIGIPSDKIDYVFESFTQVDGTYTRQYQGTGLGLGIVRSLVWSM 701

Query: 769 GGHVSISSSDEGVTTINCRI 788
            G +++ S     TTI   +
Sbjct: 702 NGTIAVDSETGMGTTIYVTL 721



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 31/206 (15%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISY-------KKNTETEGI 231
           + T +  ++      F+ L +S+    W  +   G I++A+ SY       +++      
Sbjct: 345 QMTQRESQIKESEERFRQLVESIHEFYWISELANGRIIYASPSYEAIWGRSRQSLHDNPE 404

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN----KSYKIVR-VLNSF 286
            F  AI    +L   E    +     +E +    ++  + G      +++ +      S 
Sbjct: 405 TFFLAIKPEDRLSVIEAFSAL-RVEGIEVDEEFRITLPDGGERWIRAQAFPVRDERGGSV 463

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAF 345
            +AG+A D+++       L                       +  N+S  E L  I    
Sbjct: 464 RQAGVAEDITERKATQQALME----------------AKHSAEAANQSKTEFLTNISHEL 507

Query: 346 LATNPSNDELLEFLRSANKLPEQLNW 371
                    +L+  R     PEQ  +
Sbjct: 508 RTPLNGILGMLQLTRETRLKPEQAEY 533



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 24/162 (14%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFD-----QNRYLQFHNRSFVELWEIDLAFLATN 349
           V +      Q+  + E    L  +I  F       N  + + + S+  +W      L  N
Sbjct: 343 VMQMTQRESQIKESEERFRQLVESIHEFYWISELANGRIIYASPSYEAIWGRSRQSLHDN 402

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP- 408
           P  +     ++  ++L     +   +     V +          LP+G    +   + P 
Sbjct: 403 P--ETFFLAIKPEDRLSVIEAFSALRVEGIEVDEEFRI-----TLPDGGERWIRAQAFPV 455

Query: 409 ---RGGTI---WMFENLTVQVD-----LETKYNTLVKVQGET 439
              RGG++    + E++T +       +E K++     Q +T
Sbjct: 456 RDERGGSVRQAGVAEDITERKATQQALMEAKHSAEAANQSKT 497


>gi|242280556|ref|YP_002992685.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123450|gb|ACS81146.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 1038

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 94/549 (17%), Positives = 202/549 (36%), Gaps = 68/549 (12%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLATNPSNDEL 355
            +           +I  N  + I     +      N++  EL+  +    L +  S   +
Sbjct: 358 ADALRRRAEIKFRDIFDNAPMGIFQATLDGSYLTANKALAELYGYENSDELISEVS--SV 415

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            + +   ++  ++           + Y+     KD   +   + + ++ +       +  
Sbjct: 416 GDQVYMNSQDWQRCVQMLRFAGQVASYEVECQRKDGGTVWTSRDMRLVESEPGMSAYVEG 475

Query: 416 FE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVA---------VFGPDG----------- 454
           F  ++T +   E +            ++    +          +F   G           
Sbjct: 476 FVIDVTARKKAEKEQQKSEWRFRSLFENSPVALWELDLSSVKEIFDSYGPDMLPVIREEL 535

Query: 455 --------------RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
                         RI  +N      + T        + +  +       Y     W ++
Sbjct: 536 LSDHKSVSRCVENIRIIDANNRTIEFFGT--------SSLEQLIDVGFSPYVTQHSWRIY 587

Query: 501 AAIITSFDD--ERKSLQGTLELLSDS----VLEYSIIP---LPNAQTMLTFVNVTDSVRA 551
             +        ER   + +   L       +L  +I+P       + ++   ++++  R 
Sbjct: 588 RTVFLDLLKGAERHRSEFSFLRLDGREQFFILNLTIVPGCEDSWERVLVAVEDISELKRI 647

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L    E  ++A+E K  F+ ++++E R+P+  + G   LL+ S+   L S+Q + + 
Sbjct: 648 EKELRSSREEAQEANEAKGRFLANMTHEFRTPMNAVKGMVQLLQRSE---LTSEQQENLR 704

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S   LL +VNDILD + +D+  M+LN   I     L E+   +        +++ +
Sbjct: 705 LIKSSVDSLLVIVNDILDYSKLDSVHMELNEENIDFPAFLREMGDVVDIGAMNKPLQVIL 764

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVK 724
            ++        D  RL Q+   +L N + F+ KG  V L+   +  +        +F V 
Sbjct: 765 EAENVPDCVRVDSLRLRQVLVNLLGNGVKFTDKG-NVTLRCRPEGPEGEGGKLRLLFEVS 823

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  +P+D  +S+F  FV        +  G GLGL+I    +   GG +S  ++++G  
Sbjct: 824 DTGIGLPKDGAESLFESFVQADPSITRKYGGTGLGLAICYKLVKHLGGELSARNNEQGGA 883

Query: 783 TINCRIPSK 791
             +  +P +
Sbjct: 884 LFSFVLPVE 892



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 104/326 (31%), Gaps = 53/326 (16%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISV-----FKVLFDSLDFLVWHRDQAGDILWANIS 221
           R +       +  E  ++ + L++ +       F+ +FD+    ++     G  L AN +
Sbjct: 336 RRIDEVNRQKDKVEQEIRNRHLADALRRRAEIKFRDIFDNAPMGIFQATLDGSYLTANKA 395

Query: 222 YKKN--TETEGIVFQKAIGESRKLFKEEIK-------KRMISSSALEKNFCETVSTLEHG 272
             +    E    +  +      +++             R     A  +  C+        
Sbjct: 396 LAELYGYENSDELISEVSSVGDQVYMNSQDWQRCVQMLRFAGQVASYEVECQRKDGGTVW 455

Query: 273 NNKSYKIV--RVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
            ++  ++V      S    G  IDV+     E            +  N  VA+   D + 
Sbjct: 456 TSRDMRLVESEPGMSAYVEGFVIDVTARKKAEKEQQKSEWRFRSLFENSPVALWELDLSS 515

Query: 327 YLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLR---SANKLPE--------------- 367
             +  +    ++   I    L+ + S    +E +R   + N+  E               
Sbjct: 516 VKEIFDSYGPDMLPVIREELLSDHKSVSRCVENIRIIDANNRTIEFFGTSSLEQLIDVGF 575

Query: 368 -----QLNWKTWKENIFSVYKSSETHKDTWH--LPNGQ----TLHVIVTS---NPRGGTI 413
                Q +W+ ++     + K +E H+  +     +G+     L++ +     +     +
Sbjct: 576 SPYVTQHSWRIYRTVFLDLLKGAERHRSEFSFLRLDGREQFFILNLTIVPGCEDSWERVL 635

Query: 414 WMFENLTVQVDLETKYNTLVKVQGET 439
              E+++    +E +  +  +   E 
Sbjct: 636 VAVEDISELKRIEKELRSSREEAQEA 661


>gi|254724123|ref|ZP_05185908.1| sensory box histidine kinase YycG [Bacillus anthracis str. A1055]
          Length = 613

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 146/394 (37%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVIQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|221210474|ref|ZP_03583454.1| PAS domain protein [Burkholderia multivorans CGD1]
 gi|221169430|gb|EEE01897.1| PAS domain protein [Burkholderia multivorans CGD1]
          Length = 1380

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/514 (16%), Positives = 179/514 (34%), Gaps = 39/514 (7%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            ++           + I+ +  +A    D+   ++    +   ++ +  + L         
Sbjct: 747  ARIEDTAKANDDLHNIIASSEIATVFVDKEIRIKRFTPNATAIFNLIDSDLG-------- 798

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS------NPR 409
                RS   +   L + T  +++   ++S    +       G+   + +        +  
Sbjct: 799  ----RSLFHITHSLRYPTLADDVRQSFQSLRLIEREIESEAGRWYLIRLLPYRTADDHID 854

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWK 468
            G  I +  ++T +   E       +          +  + +   +G I   N     ++ 
Sbjct: 855  GAVITLI-DVTDRHHAEEAARAGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFG 913

Query: 469  TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              E+ +  G  +  I     R+          AA     DDER              +  
Sbjct: 914  YTEDEM-IGQDVELIYEPNDRHARVPAHEREVAAREGRADDER-----WHRTKDGRRIFC 967

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERAL------------TEKNEALRKADEIKNSFVQHV 576
            S +  P A T             +R L                E    ++++K+ F+  +
Sbjct: 968  SGVVTPIADTSFNGFAKIVRDLTQRKLSEDANREALAREQAAREQALSSNQLKDEFIAVL 1027

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+ELR PL  I    ++L             +  E I  +      +++D+LDL+ +  G
Sbjct: 1028 SHELRHPLNLIGVRAEMLPRLPETRDIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTG 1087

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             + L  S + L  +L  +  +     H   + +           +AD  R  QIF  ++S
Sbjct: 1088 KLALELSRVDLTAVLRTIVDTCEADAHARGLVLTAELPDDPAIALADPIRCEQIFWNLMS 1147

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
            NA+ F+  G  ++++   +       V ++G  I  D    VF+ F        R G+G+
Sbjct: 1148 NALKFTHAGGRIVVRLTHEARMLRVDVIDDGQGIDRDTLPHVFDMFRQAPRDRTRGGLGI 1207

Query: 757  GLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
            GL++V   + +H G +S +S      TT+   +P
Sbjct: 1208 GLALVRQLVEMHDGRISAASDGPGRGTTMTVWLP 1241


>gi|49481209|ref|YP_039455.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196036107|ref|ZP_03103507.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218906657|ref|YP_002454491.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
 gi|49332765|gb|AAT63411.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195991274|gb|EDX55242.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218538378|gb|ACK90776.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
          Length = 613

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25]
          Length = 1059

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+    +  +   +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L + Q  Y
Sbjct: 384 QAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---PLTATQRDY 440

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   I+ K  E  I +
Sbjct: 441 VDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDV 500

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVK 724
           +V IS       + D  R+ QI    +SNA+ F+ +G    S +  +         FSVK
Sbjct: 501 QVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVK 560

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I E   K +F  F    +   R   G GLGL+I    + L GG + + S     +
Sbjct: 561 DSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGS 620

Query: 783 TINCRI 788
                +
Sbjct: 621 RFFFEL 626


>gi|325104528|ref|YP_004274182.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324973376|gb|ADY52360.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 675

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 108/681 (15%), Positives = 241/681 (35%), Gaps = 85/681 (12%)

Query: 179 AETTLKCKKLSNH---ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +  + +  +       +  FK +F++     +     G I++ N +       E      
Sbjct: 5   SHLSEENNRSLKEQYVLDTFKPIFENHFLPFYVCSIKGKIIYYNEAAIDLWGHEPPKNAI 64

Query: 236 AIG-------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN-NKSYKIVRVLNSFG 287
             G       +   L  +  +     +S    +  E +  L      +     ++     
Sbjct: 65  WTGAQKTYNLDGTVLLPKNSEMACCLNSNQHSSGLEILIELPDSTLKRVISNPKIFFDKN 124

Query: 288 EAGIAI-----DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI- 341
              IA+     D++      +Q T   +I+ +   AI   D N  +   N    +++   
Sbjct: 125 NCPIAVHNTLLDITHNKKAEEQQTIFSDIVKHAYNAIISKDLNGIITSWNTGAEKIFGYT 184

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           +   +  + +     +     + +   +             K  + ++      +G  ++
Sbjct: 185 EEEMIGQSITKLIPRDRFHEEDNIIGSIK----------SGKRIDHYQTVRLKKDGSEIN 234

Query: 402 VIVTSNPRGGTIW-------MFENLTVQV---DLETKYNTLVKVQGETIDHLSE-----G 446
           V +T +P   T         +  ++T+++       +Y+  ++V       +SE      
Sbjct: 235 VSITISPIFNTAGEIIGASKIARDITLEILHQQAFKRYSENLEVLNSVGRAISEKLDVQA 294

Query: 447 VA--VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +   V     ++  +N  F + +    N       + N++      + + +     + + 
Sbjct: 295 ILQKVIDATTKVTGAN--FGAFFYKTTNSSGEEMMLYNLSGASKDIFEKMEMPRETSLLH 352

Query: 505 TSFD------------DERKSLQGTLELLSDS---VLEYSIIPLP--------------- 534
            +F             DER         + +    V  Y  +P+                
Sbjct: 353 QAFSGNSPIRIDDVTKDERYGKNAPYNGIPEGHFPVKSYLSMPVKLNSGRVIGGLLFGHK 412

Query: 535 -NAQTMLTFVNVTDSVRAERALTEKNEALRKA----DEIKNSFVQHVSYELRSPLTNIIG 589
              Q      N+  S+ ++ A+   N  L +     +  K+ F+   S+EL++PLT+I G
Sbjct: 413 KAGQFTEEHENIVSSIASQAAIALDNSELFEEIKSLNLKKDEFIALASHELKTPLTSIKG 472

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +  +L  S           +V         L +LV+D+L+++ ++AG ++ N   + L  
Sbjct: 473 YLQILSRSTHDK--EMSDLFVNKALIQVGKLESLVSDLLNVSKIEAGKLQFNIEILDLRQ 530

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ E  ++ +     + I +  I    +     D+QRL Q+   +LSNA+ +S K   V 
Sbjct: 531 LVLESIENFSYTSRSHKINLDDIKSPVI--IEGDKQRLEQVIINLLSNAVKYSPKSDKVD 588

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           +  + D  + I S+K+ G  +  +  K++F RF          G+GLGL + +  +  H 
Sbjct: 589 VFLSSDENNAIVSIKDTGLGLSNESQKNIFTRFYRAEGVSNISGLGLGLYLTKEIVERHH 648

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + + S           +P 
Sbjct: 649 GKIEVESELGQGAEFTFTLPL 669


>gi|298492942|ref|YP_003723119.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
 gi|298234860|gb|ADI65996.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
          Length = 574

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 113/463 (24%), Positives = 190/463 (41%), Gaps = 54/463 (11%)

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           D   LA N S  E+L FL  +  L E +N     E I +   +     +   +   Q L 
Sbjct: 148 DPQILAANKSTLEIL-FLNYSKYLEEFINQ---IEPILTRIDTPRIQPEQVEIAREQLLG 203

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH--LSEGVAVFGPDGRIKLS 459
           V+ +       + +  +   ++ LET     +K + +      +   + +      +   
Sbjct: 204 VMNSQIVE--QLNLLSDQLTRI-LETAQTQELKRRTDVEQARFVERAIVIVSM---LVSV 257

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             A    W+T      P   +  +A   +R  N    +DL A I T  DDE   L  +L 
Sbjct: 258 AVAAVVAWRTSRALAEPVITLTQVAEQVARKSN----FDLRAPITT--DDEIGLLAKSLN 311

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            L + V E +                       R L +  E    A + K+ F+ +VS+E
Sbjct: 312 RLIERVSERT-----------------------RQLQQAKELAEAASKAKSQFLANVSHE 348

Query: 580 LRSPLTNIIGFTDLLKTSKLG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           LR+PL  +IG + LLK   +    +      +E I+++   LL L+NDILD++ ++AG M
Sbjct: 349 LRTPLNAVIGLSQLLKDDAVDIGASPDFITDLETINSAGRHLLELINDILDVSKIEAGKM 408

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L   T  +  L+N V  ++   + +N   + +  D  LG+  AD+ R+ Q+   +LSNA
Sbjct: 409 TLYPETFDIITLINNVVLTVKPAIEKNGNTLVLECDEYLGTMYADQTRMRQVLLNLLSNA 468

Query: 699 MDFSSKGSTVILKAARDN---------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             F++ G  V L    D          G  IF+V +NG  +     + +F  F+      
Sbjct: 469 AKFTTNG-KVTLTVKIDKTIILKEAPFGSIIFTVTDNGIGMSPSQEQKLFQPFIQGDIST 527

Query: 750 Q--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                G GLGL+I   F  + GG + ++S     +     +P 
Sbjct: 528 TKKYGGTGLGLAISRHFCQMMGGEILVNSQLGVGSNFKVSLPL 570


>gi|317129906|ref|YP_004096188.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474854|gb|ADU31457.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 592

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 159/380 (41%), Gaps = 25/380 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + ENL+    +   Y          ID++  G+ +    G I L N   +S+++   +  
Sbjct: 231 LAENLS---HITKTYEVQQDRLETLIDNMGSGLLLINSKGDITLVNKTCQSIFQENTDHW 287

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               + + I           +       I+ +    +K L   +  +     +    P+ 
Sbjct: 288 INKLYYQVI--------KHREVIKFIQEILLTEKRIKKHLALPIG-IEIRHFDVYGAPII 338

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +   LT + +      E         L+K ++ +  FV +VS+EL++P+T++ GFT+ L
Sbjct: 339 GSDLSLTGIVLVFHDITE---------LKKLEQARKDFVANVSHELKTPVTSLKGFTETL 389

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            +  +      + +++  IS  S  L +L++D+L+L+ ++     LN+  + ++ LL++V
Sbjct: 390 LSGAVHD-EQLREKFLTIISNESERLESLIHDLLELSKIEGSQFVLNWDLVNIDVLLSDV 448

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              + +K    NI       G      AD  R+ Q+F  I++NA+ ++     V +K   
Sbjct: 449 FMMLESKAQNKNIHFSKEVIGD-TVIEADAHRIKQVFINIINNAIMYTPNDGEVHVKVIE 507

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                I  V++ G  I +     +F RF        R   G GLGL+IV+  I  H   +
Sbjct: 508 KAETVIVEVQDTGIGISKKEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLIEAHRATM 567

Query: 773 SISSSDEGVTTINCRIPSKE 792
           S+ S     TT       ++
Sbjct: 568 SVDSEVGQGTTFKMEFKKQQ 587


>gi|281355936|ref|ZP_06242429.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317305|gb|EFB01326.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 835

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/381 (22%), Positives = 162/381 (42%), Gaps = 26/381 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +     +     + +   IDH+   + +      +   NPA  ++    E  L      
Sbjct: 319 EKRRSLEQLKRSEREKSMIIDHIDTAIMLLDGREHLIKVNPAAAAIAGKSEAELLAEPCY 378

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--- 537
           +N    C   +++    + F          R+     +E+   S +  S +P+ +     
Sbjct: 379 QNFCG-CGPDFDKCPVSESFRT--------RRPAVLDVEIGGRSYI-ASAVPVLDDDGEI 428

Query: 538 --TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T V+VT+    E  +    +    A+  K++F+  +S+E+R+PL  IIGF+++LK
Sbjct: 429 INVIHTLVDVTNRKETEAKIRGSLKEAEVANRAKSTFLATMSHEIRTPLNAIIGFSEILK 488

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L ++  + VE I+A+   LL L+ND+L+++ +DA  +++ Y  I L  +L +V 
Sbjct: 489 NE---GLPAEALESVEAINAAGESLLALINDVLEISKIDADKLEIIYGWIRLETVLGDVG 545

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +    ++ +  + +++     L  F     RL QI   +L NA+ F+  GS  ++ A R 
Sbjct: 546 RIFEPQLRQKQLALRMEIPSSLPEFHFSASRLRQILYNLLGNAVKFTVSGSVTVMAAVRK 605

Query: 716 N----GDFIFSVKNNGSSIPEDMCKSVFNRFVS----NAHRGQRRGVGLGLSIVESFINL 767
                 +   +V + GS I  +  K +F  FV     +A      G GLGL+IV      
Sbjct: 606 GTGNQAELEIAVTDTGSGITPEDQKKIFEPFVQSRTGDAGGDASEGTGLGLAIVRRLAEK 665

Query: 768 HGGHVSISSSDEGVTTINCRI 788
             G V + S     +      
Sbjct: 666 MNGEVLLESEPGRGSRFRIVF 686


>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
 gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
          Length = 2241

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 10/244 (4%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
              L        +A+  K+ F+  +S+E+R+P+  IIG + L   +    LN  Q  +++ 
Sbjct: 1499 EELNVAKVLAEEANRAKSLFLATMSHEIRTPMNAIIGLSRL---TLKTPLNLDQKDFMDK 1555

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I  S+  LL ++NDILD + ++A  M L  +   L  +++ +    A K  E  + + V 
Sbjct: 1556 ILESAEGLLGIINDILDYSKIEAHKMVLEQTRFELQSVMSRIVTICALKAKEKALELHVD 1615

Query: 673  SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNG 727
             D  + + +  D  RL QI + ++SNA+ F+ KG   + +   +         F V ++G
Sbjct: 1616 IDSDVPALLLGDPLRLQQILTNLVSNAIKFTEKGFVGIRVSLEQTQEGTPQVRFDVTDSG 1675

Query: 728  SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              + ++  + +F  F         +  G GLGL+I    + L  G + + S     +T  
Sbjct: 1676 VGLTQEHQRELFKPFTQADASITRKYGGTGLGLAICRQLVELMKGQIWVRSHLGKGSTFG 1735

Query: 786  CRIP 789
             RIP
Sbjct: 1736 FRIP 1739


>gi|94267227|ref|ZP_01290820.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93452082|gb|EAT02766.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1295

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 125/692 (18%), Positives = 255/692 (36%), Gaps = 96/692 (13%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           ++ +G+  +L +  L   +             ++   V   D+  +I + N +  +    
Sbjct: 137 VAFNGVLDDLHQANLSYAEAI-------SYLHAIPAPVQVVDRQLNIRFINQAGARA--A 187

Query: 229 EGIVFQKAIGESRKLFKEEI-------------------KKRMISSSALEKNFCETVSTL 269
              V Q    +  +LF+                       + +  ++  E  +  T + L
Sbjct: 188 RLAVGQCIGKKCHELFQTRDCNSDRCKVARAMIQNRVLTGENVSITAKGEAPYRYTAAPL 247

Query: 270 EHGNNKS-------------YKIVRVLNSF--GEAGIAID-VSKEITVNDQLTHTYEILH 313
           +  N +               ++V +  +   G+ GI+I+  S++  ++  L      L 
Sbjct: 248 KDDNGRIIGAVEYIVDIRDEMRVVAMAEAIAQGDYGISIEPRSEDDRLSHALNKMTATLR 307

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
            L   +    ++R+L+    +  +    +   L+       +LE +    ++     +  
Sbjct: 308 QL---VERQAEDRWLENGVATVSDRLHGEHDHLSLAH---NVLEAMVEVLEVRAGAFYLA 361

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--------GTIWMFENLT-VQVD 424
             +    + KS        H  +G+     +    +G        G +    +L    + 
Sbjct: 362 QDQETLRLLKS--------HGGDGEIEARSILPRDQGFIGRAIGQGRVLTVNDLPPDYLK 413

Query: 425 LETKYNTLVKVQGETID--HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + +            +     ++   V    G     + A   L +  EN +    H   
Sbjct: 414 VSSALGEAPATSLAVLPVYFANQLRCVIELGGHHPFDSRAELLLQRVAEN-IGVAVHTTE 472

Query: 483 IAATCSRYYNESD--------GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PL 533
           +    +     +           +          ++ K+L  + E L     E  +    
Sbjct: 473 VRYELAMLLETTQEQAEKLQVQQEELRQTNQELQEQAKALASSEERLQVQQEELRVSNEE 532

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              ++        +  RA R L  K   L  +   K+ F+ ++S+ELR+PL +I+  + L
Sbjct: 533 LEERSRSLAEKNRELDRARRELETKARDLETSGRYKSEFLANMSHELRTPLNSILILSQL 592

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +K G+L  +Q ++   I  S + LL+L+N++LDL+ ++AG M++N  T+ L ++++ 
Sbjct: 593 LAANKEGNLQPRQLEFANTIHNSGSDLLHLINEVLDLSKIEAGRMEINPDTVELKEMIDS 652

Query: 654 VKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +      +  +N +R+   I+     +   D  RL QI   +LSNA+ F+ +G  + L+ 
Sbjct: 653 LLGPFQAQAEQNGLRLSGEITPEAPATIFTDETRLRQILKNLLSNALKFTQQGE-ITLRC 711

Query: 713 AR-------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            R                   F+V ++G  I  D  + VF  F        R   G GLG
Sbjct: 712 GRPARAELPTGLRLVPERAVYFAVSDSGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLG 771

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S+SS +   TT    +P
Sbjct: 772 LSISRQLARLLGGELSVSSCEGEGTTFTLWLP 803


>gi|332531231|ref|ZP_08407144.1| Proline sensor PrlS [Hylemonella gracilis ATCC 19624]
 gi|332039338|gb|EGI75751.1| Proline sensor PrlS [Hylemonella gracilis ATCC 19624]
          Length = 1317

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 179/413 (43%), Gaps = 27/413 (6%)

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           + W   +G+            G +   ++++  V    +     ++     + L E  AV
Sbjct: 373 EVWVRLSGEVELYKGKPQRVIGAV---QDISSYVLARQRIQAGERLLRSAFEALGEAFAV 429

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           +    R+   N  +R +   + + ++ G     +A             D    +      
Sbjct: 430 YDKHERLLFYNDKYREILGAKRSAITTGLTFDTVAQMLIDAGVYRGNTDPRTRLREMRQM 489

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            ER   +  ++L +   ++Y     P+   +L  +++TD       + E  +A + A E 
Sbjct: 490 MERPDFRYQVQLSTGRWVKYIGHATPDGLHVLFRIDITD-------IQEALQAAQAAAEG 542

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  ++G   LL+ +    L+++Q   +  I +++ +LL ++NDIL
Sbjct: 543 KSRFLANMSHEIRTPMNAVMGMLQLLEQT---PLDAEQEDLLGKIGSAARMLLGILNDIL 599

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++AG M L+     L+ L  E+   ++  + + ++ +    D  +   +  D  RL
Sbjct: 600 DFSKIEAGKMPLDLEPFALDTLYAELSPILSGALGDKSLELIYDIDPAIPLVLRGDMLRL 659

Query: 688 LQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+   +  NA+ F+++G   + ++  R +       F+V++ G  I  D  + +F+ F 
Sbjct: 660 KQVLMNLGGNAIKFTAQGQVLLRVRQMRRDEHGVLLEFAVQDTGIGISPDQIQHIFSGFS 719

Query: 744 S--NAHRGQRRGVGLGLSIVESFINLH-----GGH-VSISSSDEGVTTINCRI 788
               +   +  G GLGL+I +  + L       G  +++ S     +  + ++
Sbjct: 720 QAEASTSRRYGGTGLGLAISQRLVGLMVEASGEGRALTVESEPGRGSCFSFQL 772



 Score = 44.9 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 115/410 (28%), Gaps = 57/410 (13%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR---KLFKEE 247
            I+    +  S    V   D AG I+WA+ +Y   T        +          +    
Sbjct: 37  DIAQLLRMARSPQDAVAFTDVAGRIVWADTAYAHLTGHGLDDLTRMTLPELLRNAVLPGP 96

Query: 248 IKKRMISSSALEKNFCETVS-TLEHGNNKSYKIV-------RVLNSFGEAGIAIDVS--- 296
            +  + ++          V      G+ +   +              G   + ID+    
Sbjct: 97  RRLELDAALHARTPLRVDVQFRRPGGHARWTMVELHPLRDPEQAEFIGWMVVQIDIDLAR 156

Query: 297 -KEITVNDQLTHTY---EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-----LA 347
            ++  V   L        I+    + ++  D    +   N  F  +              
Sbjct: 157 GEQERVRQALRDHENLNSIMDQHAI-VSETDLQGRILRFNERFTHISGYAQDELLGLNHN 215

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
              S     +F R       Q   + W+  I +  K            NG    V     
Sbjct: 216 LLNSGHHTPDFWRDMWSTIGQG--RVWRGEICNRAK------------NGSLYWVDSVIA 261

Query: 408 PRGG-------TIWMFENLTVQVDLETKYNTLVKVQGETIDH--LSEGVAVFGPDGRIKL 458
           P  G        + +  ++T + + E       ++ G    H  L  GV  F  + R  L
Sbjct: 262 PLMGPDGLPERYVSVRTDITARKNHEVLLQRTGRIAGVGGWHGDLGSGVLNFSEEARAIL 321

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
              A +         L+P        A   R + ++           S   E+       
Sbjct: 322 RLDAAQLPVSEVMQGLAPQ------VAQELRGHVDALVQGRAQVFSQSLKVEQADGSEVW 375

Query: 519 ELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVRA-ERALTEKNEALRK 564
             LS  V  Y   P   +   Q + ++V     ++A ER L    EAL +
Sbjct: 376 VRLSGEVELYKGKPQRVIGAVQDISSYVLARQRIQAGERLLRSAFEALGE 425


>gi|300866672|ref|ZP_07111358.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335346|emb|CBN56518.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1013

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  +    + +  E    A+  K+ F+ ++S+ELR+PL  I+G+  +L+ S+   L+ 
Sbjct: 540 FQEIQQVNVEIQQAKEFADAANNAKSEFLANMSHELRTPLNGILGYAQILQRSE--PLSE 597

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K  + ++ I    + LL L+NDILDL+ ++A  + L  + + L   L  V +    +  +
Sbjct: 598 KGHKGIDIIYQCGSHLLTLINDILDLSKIEARKLDLYPAPLHLPSFLQNVIEINRIRAEQ 657

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             I     ++ +L     AD +RL Q+   +L NA+ F+ KGS V  K         F +
Sbjct: 658 KGITFDYQANSQLPIGVYADEKRLRQVLINLLGNAIKFTDKGS-VTFKVEPIGQKIRFQI 716

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G+ +  +  + +F  F      + Q  G GLGL+I    + L G  +++ S     +
Sbjct: 717 ADTGTGMTSEQVEKIFLPFEQVGDTKKQAEGTGLGLAISHKIVALMGSEITVDSIPGEGS 776

Query: 783 TIN--CRIPSKE 792
           T +    +P  E
Sbjct: 777 TFSFEVELPEAE 788


>gi|22298910|ref|NP_682157.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
 gi|22295091|dbj|BAC08919.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
          Length = 1060

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 80/310 (25%), Positives = 144/310 (46%), Gaps = 13/310 (4%)

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           A   R Y+  D   +F   +          +  + LL +     ++     A  +   + 
Sbjct: 524 ARVQRVYSRIDTPIIFNGQLLGVICVESIGKQRVWLLEERRFVANV-----ADIVTIALA 578

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                +AER L +  EA   A++ K+ F+ ++S+ELR+PL  I+GF+ +L + +  +L  
Sbjct: 579 AHQRHQAERELLKAKEAAEAANKAKSIFLANMSHELRTPLNAILGFSQILLSDR--TLAP 636

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +  Q +E I+ S   LL L+ND+LD+A ++AG M L  +T  L  +L ++++ +  +   
Sbjct: 637 QHRQTLEKINRSGEHLLGLINDVLDMAKIEAGRMILQQTTFDLRRMLRDLEEMLKVRAEA 696

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFI 720
             +R+       L  +   D  +L Q+   +L N + F+ +GS V LK    A++     
Sbjct: 697 KGLRLVFDLAANLPVAVTTDEMKLRQVLVNLLGNGIKFTKEGS-VCLKVSYRAQEPPRLA 755

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDE 779
           F V + G  +     K +F  FV      +   G GLGL+I   F+ L GG + + S+  
Sbjct: 756 FEVSDTGIGMTPQELKMLFQPFVQTDSSKKVSEGTGLGLAISRQFVQLMGGDIQVRSTKG 815

Query: 780 GVTTINCRIP 789
             +     +P
Sbjct: 816 KGSHFYFEVP 825


>gi|167636243|ref|ZP_02394546.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
 gi|167528358|gb|EDR91129.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
          Length = 611

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 146/394 (37%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 233 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 292

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 293 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 329

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 330 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 389

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+ +D+  
Sbjct: 390 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVIQEETERMIRLVNALLQLSKLDSTE 448

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 449 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 507

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 508 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 567

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 568 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 601


>gi|150009789|ref|YP_001304532.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938213|gb|ABR44910.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1045

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 220/518 (42%), Gaps = 59/518 (11%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE---LLEFLRS 361
           L+   ++ +N+ +        + L        E  +ID+  L  N + +E     +F+ +
Sbjct: 411 LSRYRDLFNNMPLPYI----RQRLI------REGTQIDVQVLDVNHAFEEKIAPKDFVVN 460

Query: 362 ANKLPEQLN-----WKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRGGTI-W 414
                E  N     +      + +V +S ++    ++  P G    +I+        +  
Sbjct: 461 KRG-KEIANLIGGSYPLLLSAVPTVLESGKSFTYEYYFEPTGLYYTIIIMPTSEENVVDA 519

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENR 473
            F ++T     +T    +       ++        +   +G+I              E++
Sbjct: 520 FFIDITDIHKFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIY------------ESK 567

Query: 474 LSPGTHIRNIA----ATCSRYYNESDGWDLFAAIITSFDD------ERKSLQGTLELL-- 521
           + PG +I            + Y         A +  +FDD      ++   +  LE L  
Sbjct: 568 VHPGDNIETAEVHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIP 627

Query: 522 ---SDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                   E  ++   +A       + + +++T+  + E  L    +   +++++K++F+
Sbjct: 628 GEDRHEWEEIQVMVEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFL 687

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GF+++L ++    L  K  ++ + I  ++++LL L+NDILDL+ +
Sbjct: 688 ANMSHEIRTPLNAIVGFSNILAST--DDLEDK-KEFADIIENNNSLLLQLINDILDLSKI 744

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG ++  Y  + +N +L +++QS   K    +++I      +      DR RL Q+   
Sbjct: 745 EAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMIN 804

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +L+NAM F+  G        RD+    F V++ G  IPE+  K +F RFV      Q  G
Sbjct: 805 LLNNAMKFTQAGLISFGYKLRDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTFAQ--G 862

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGLSI E  +    G + + S +   +     +P +
Sbjct: 863 TGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLPFQ 900


>gi|256424541|ref|YP_003125194.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256039449|gb|ACU62993.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1203

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 150/316 (47%), Gaps = 14/316 (4%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +        N +   +  A  + + ++E +  Q  L+  +  + E S + L +   ++
Sbjct: 451 EELQVQHGELENINTELEAQAQKLQASEEELRVQQEELQQANQELEERSRL-LEDRNQVI 509

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              N+    +AE         L  + + K+ F+ ++S+ELR+PL +I+  + L+  +   
Sbjct: 510 VERNLEIQKKAEE--------LEISTKYKSEFLANMSHELRTPLNSILLLSRLMAENNEK 561

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+  Q +  + I +S   LLNL+++ILDL+ ++AG M L Y+ + ++++ N+++     
Sbjct: 562 NLSDDQIESAQVIQSSGKGLLNLIDEILDLSKIEAGKMDLEYAPVPVHEICNDMEALFGP 621

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG 717
              E N+ + V       + +  D+ RL QI   +LSNA+ F++KG+    +   A+D  
Sbjct: 622 IAREKNLALNVQVMSDAPALIETDKMRLEQILKNLLSNALKFTAKGAVTLQVTAVAQDPS 681

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
              F+V++ G  IP +  + +F  F         +  G GLGLSI      L GG + + 
Sbjct: 682 IVRFAVRDTGIGIPVEKQQVIFEAFKQADGSTRRKYGGTGLGLSISRELAKLLGGEIRLE 741

Query: 776 SSDEGVTTINCRIPSK 791
           S     +     IP +
Sbjct: 742 SEPGHGSEFVVTIPLR 757


>gi|221197648|ref|ZP_03570695.1| PAS domain protein [Burkholderia multivorans CGD2M]
 gi|221204320|ref|ZP_03577338.1| PAS domain protein [Burkholderia multivorans CGD2]
 gi|221176486|gb|EEE08915.1| PAS domain protein [Burkholderia multivorans CGD2]
 gi|221184202|gb|EEE16602.1| PAS domain protein [Burkholderia multivorans CGD2M]
          Length = 1380

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 110/688 (15%), Positives = 234/688 (34%), Gaps = 45/688 (6%)

Query: 128  SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
              A   LR  G        T     ++++ R     A  R L   G   E          
Sbjct: 573  DNAGRFLRHVGGELSSNIMTLVLPDLRLDLRT----AIFRALQ-TGTSVEARRVKWTHDT 627

Query: 188  ----LSNHISVFKVLFDSLDFLVWHRDQ-AGDILWANISYKKNTETEGIVFQKAIGESRK 242
                ++  +  F     + DFL+   D+  G +   + +     +      +  +  SR+
Sbjct: 628  QVSWINMTVRPFHDKVANADFLLVVFDEVDGRMTDEDQAEASGQDPVLAQLEHELQHSRE 687

Query: 243  LFK------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
                     E   + + +S+   +   E + +       S + ++ +N       A   +
Sbjct: 688  QLATIIEQYETSVEELKASNEELQAINEELRSTSEELESSKEELQSVNEELTTANAEMQA 747

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            +           + I+ +  +A    D+   ++    +   ++ +  + L          
Sbjct: 748  RIEDTAKANDDLHNIIASSEIATVFVDKEIRIKRFTPNATAIFNLIDSDLG--------- 798

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS------NPRG 410
               RS   +   L + T  +++   ++S    +       G+   + +        +  G
Sbjct: 799  ---RSLFHITHSLRYPTLADDVRQSFQSLRLIEREIESEAGRWYLIRLLPYRTADDHIDG 855

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKT 469
              I +  ++T +   E       +          +  + +   +G I   N     ++  
Sbjct: 856  AVITLI-DVTDRHHAEEAARAGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFGY 914

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLE 527
             E+ +  G  +  I     R+          A      DDER  ++  G     S  V  
Sbjct: 915  TEDEM-IGQDVELIYEPNDRHARVPAHEREVATREGRADDERWHRTKDGRRIFCSGVVTP 973

Query: 528  YSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             S                  ++   +  A        E    ++++K+ F+  +S+ELR 
Sbjct: 974  ISDTSFNGFAKIVRDLTQRKLSEDANREALAREQAAREQALSSNQLKDEFIAVLSHELRH 1033

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL  I    ++L             +  E I  +      +++D+LDL+ +  G + L  
Sbjct: 1034 PLNLIGVRAEMLPRLPETRDIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTGKLALEL 1093

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            S + L  +L  +  +     H   + ++     +    +AD  R  QIF  ++SNA+ F+
Sbjct: 1094 SRVDLTAVLRTIVDTCEADAHARGLVLQTEFPDEPAIALADPIRCEQIFWNLMSNALKFT 1153

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
              G  ++++   +       V ++G  I  D    VF+ F        R G+G+GL++V 
Sbjct: 1154 HAGGRIVVRLTHEARMLRVDVIDDGQGIDRDTLPHVFDMFRQAPRDRTRGGLGIGLALVR 1213

Query: 763  SFINLHGGHVSISSS-DEGVTTINCRIP 789
              + +H G +S +S      TT+   +P
Sbjct: 1214 QLVEMHDGRISAASDGPGRGTTMTVWLP 1241


>gi|183219822|ref|YP_001837818.1| putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167778244|gb|ABZ96542.1| Putative sensor protein; putative membrane protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 921

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 121/237 (51%), Gaps = 10/237 (4%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L KA+ +K+ F+ ++S+E+R+P+  ++G   LL+ +   +++ +Q  Y++    S   LL
Sbjct: 535 LEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEET---NVDIEQKDYLDNAKKSVLSLL 591

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGS 679
            ++NDILD++ ++   +++  +   +  L  +++    + + + N+++ +    +     
Sbjct: 592 TIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDKNLKLNLDFTIEDTNLH 651

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKS 737
            + D  RL Q+ + ++SNA+ F+  G  + L    D       F V + G  I E+  K 
Sbjct: 652 ILVDENRLRQVLNNLISNALKFTPSG-IITLAVKLDPSRNFIEFCVHDTGIGISEENIKR 710

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F+RFV       +R  G GLGL I +  +NL GG + + S     +T    IP  +
Sbjct: 711 LFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILNIGSTFKFTIPFHQ 767


>gi|52145273|ref|YP_086730.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51978742|gb|AAU20292.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 613

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 988

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 101/547 (18%), Positives = 197/547 (36%), Gaps = 65/547 (11%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             + ++      I  +L   + I   D++  + + N  ++ +     + L     N  + 
Sbjct: 307 RQIREKNLQLDAISSHLLGGLLITRLDRSFTILYANDGYLNMVGYTRSQLRKEKRNAAVS 366

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNPRGGTI 413
                      Q  +    +N     +     +D    W L  G+ ++     +P  G I
Sbjct: 367 LCASEERNATMQAIFSQLSQNGMLSLEHRLQRRDGTRLWALIRGRQVN-----DPELGQI 421

Query: 414 --WMFENLTVQVDLETKYNTL--------------VKVQGETIDHLSEGVAVFGPDGRIK 457
             W+  ++T Q + +  +                        +D  S  +     +  + 
Sbjct: 422 GVWVIIDVTEQKETQLAFERQSCELETLVQQVSASENRLKFLVDSASIPLWSTDLETGLI 481

Query: 458 LSNPAFRSLWKTEENRLSPG-------------THIRNIAA---------TCSRYYNESD 495
             N     +    E  L                 H+RN+           T    Y   D
Sbjct: 482 SYNEHVCRMLGWPEGVLHMTLPDFLLRCHPDDVEHVRNVFESFSAEDAGGTLEYEYRVRD 541

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSV-----LEYSIIPLPNAQTMLTFVNVTDSVR 550
           G   +  I+         L    E +   +      + ++  L  A  +   V    +  
Sbjct: 542 GNGNWRWILVKGQKAINPLTHKAERVGIVIDNHARKQEALDTLQRAAELEAQVQTRTAEL 601

Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           A R   L +  +   +A   K+ F+  +S+E+R+P+  IIG T L    +     +  + 
Sbjct: 602 AARNAELLKSQQEALEATRAKSEFLATMSHEIRTPMNGIIGLTYLALQREC---PAAIAD 658

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+  I  ++  LL ++NDILD + V++G M        L+++L+   Q     + E  + 
Sbjct: 659 YLAKIDVTAKTLLRIINDILDFSKVESGKMDFEEIPFTLSEVLDNTLQMFTHAVREKGLS 718

Query: 669 IKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSV 723
           ++    +G   S V D  RL QI   ++ NAM F+ +GS  + ++    +   +   F+V
Sbjct: 719 LRFDVGEGVPQSLVGDPTRLGQILLNLVGNAMKFTHEGSVTLFVRCVETDQQTVTLGFAV 778

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP D   S+F  F+        +  G GLGL+I    +   GG + + S     
Sbjct: 779 RDTGIGIPADKLPSLFQPFIQADMSVSRRYGGTGLGLAIARVLVQHMGGTIHVRSVVGKG 838

Query: 782 TTINCRI 788
           +T +  +
Sbjct: 839 STFSFTL 845


>gi|255008320|ref|ZP_05280446.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313146041|ref|ZP_07808234.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134808|gb|EFR52168.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 870

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 107/511 (20%), Positives = 206/511 (40%), Gaps = 38/511 (7%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +  Q      + H++   +  +D +  + F NRS +++  +               E
Sbjct: 375 QNRLVAQRDEFDNVFHSIRDGVITYDTDLRIHFTNRSLLKMLHLPKD------------E 422

Query: 358 FLRSANKLPEQLNWKTW---KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN--PRGGT 412
             R    LP    +K +   KE + S+ +   T + +  +P    +  + + +  P  G 
Sbjct: 423 AARPYEGLPAGSIFKIYNNGKEILRSMLERVVTEEGSVVIPENSFMQEVHSGSYFPVSGE 482

Query: 413 IWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           I        +T  + L  +  +  ++Q        +  +++     I+     F + +  
Sbjct: 483 IVPIRAHGKITG-MALSARNISDEEMQKRFFSMAVDESSIYPWQYNIRTGLFTFPAGFLV 541

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD----SV 525
                   T I        R  +  D    F     +     +S + +   LS       
Sbjct: 542 RFGFAENKTTISR--NEMDRMVHPDDQELAFELFNRALAGLSQSTRMSFRQLSGDGRYEW 599

Query: 526 LEYSIIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            EY    L           +    ++      E  LT   +   +AD++K++F+ ++S+E
Sbjct: 600 WEYRTSVLAGLTTDTPYSILGVCQSIQRYKTTEEQLTAARDKALQADKLKSAFLANMSHE 659

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+DLL  +  G    +   ++E I+ +  +LL L+NDILDL+ +++G M 
Sbjct: 660 IRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIETINKNCGLLLALINDILDLSRIESGTMD 718

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNA 698
             ++   L  L+  V  S    M    +R+ +          V D  RL Q+ + +++NA
Sbjct: 719 FQFAGHNLPLLMKNVYDSQQLNMPS-GVRLVLKLPENSKKYLVTDNVRLQQVVNNLINNA 777

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
             F+++GS        + G     V++ G  I ED  + +F RF       Q  G GLGL
Sbjct: 778 AKFTTQGSITFGYTEEEPGYTSIFVEDTGKGISEDGLRHIFERFYKVDSFTQ--GAGLGL 835

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           SI ++ I    G ++++S +   T    R+P
Sbjct: 836 SICQTIIGRLNGVITVTSKEGKGTRFTVRLP 866


>gi|150018828|ref|YP_001311082.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149905293|gb|ABR36126.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 502

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 123/253 (48%), Gaps = 10/253 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +   D    +  L +  EA   A+  K+ F+ ++S+E+R+PL  IIG TDL  ++   +L
Sbjct: 1   MYKFDRALTKEELFKLKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTDLTLST---NL 57

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q + +  + + +  LL+L+N+ILDL+ ++A  + +      +  L+  V  +   K 
Sbjct: 58  TEEQKENLSIVKSCAHSLLSLINNILDLSKIEAEKVLIENVNFNIQVLIKNVIYTNLPKA 117

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
           +E  I++    D  +    V D  RL Q+ + ++SNA+ F+  G  +I    +  +++  
Sbjct: 118 NEKYIQLHYTIDENIPQVLVGDVYRLEQVLNNLVSNAVKFTESGFVIIKVRKINKSKNEY 177

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
           +  F V++ G  I  D  + +F  F         +  G GLGLSI +  + L GG++ + 
Sbjct: 178 EIQFVVEDVGIGISRDEMQHLFKSFSQVDGSITRKYGGTGLGLSISKKLVELMGGNIEVE 237

Query: 776 SSDEGVTTINCRI 788
           S     +     I
Sbjct: 238 SEKGVGSKFYFAI 250


>gi|119900236|ref|YP_935449.1| putative two component sensor protein [Azoarcus sp. BH72]
 gi|119672649|emb|CAL96563.1| putative two component sensor protein [Azoarcus sp. BH72]
          Length = 852

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 7/241 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +          +K+ FV  +S+ELR+PL  I+GF +L++     + N +   + + 
Sbjct: 604 QRLEDARRQAEDNSRMKSDFVASMSHELRTPLNGILGFAELIRD---DAPNDEVRDHADT 660

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+LVND+LD+A ++AG M L      L  LL +V     T   +  +     
Sbjct: 661 IYQSGEHLLSLVNDVLDIAKIEAGHMSLESVAFDLPALLQQVANLHGTMAQQKGLAFATE 720

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               L  +   D  RL Q+ + +L+NA+ F+  G  V L A  +    I  V++ G  I 
Sbjct: 721 FAPGLPATLAGDPTRLRQVINNLLNNAIKFTPAGE-VKLLARTEADRLIVGVRDTGPGIA 779

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +M   +F+RF   +     +  G GLGL++V   + L GG V + S+          IP
Sbjct: 780 AEMQPVIFDRFRQASTFITREHGGTGLGLALVREVVALMGGAVRLESAPGEGAYFEFWIP 839

Query: 790 S 790
            
Sbjct: 840 L 840


>gi|298242637|ref|ZP_06966444.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555691|gb|EFH89555.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 557

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 126/240 (52%), Gaps = 4/240 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK-LGSLNSKQSQYVEY 612
            L EKN AL +A+ +K+ F+ +V++ELR+PL +II +  LL      G L+S+Q +++++
Sbjct: 299 ELKEKNAALEQANHLKSQFLANVTHELRTPLHSIISYGALLLEGYVEGELSSEQEEHIQF 358

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  L +LV+D+LDL+ ++A  +++    + L+  L+EV   +       ++ + + 
Sbjct: 359 MVRRAEDLSHLVDDMLDLSKIEADRIEMKPEALELSVSLSEVVNQLKPMALNKDLYLNLE 418

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIP 731
            D ++   +AD  RL QI   ++SNA+ F+ KG  T+  +   +    + SV + G  I 
Sbjct: 419 CDPQVPKVLADSHRLRQIVLNLVSNALKFTEKGGVTIHCQHMPERAQVLISVHDTGIGIS 478

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F  F        RR  G GLGL+I    I L GG +++ S     +T    +P
Sbjct: 479 PAALGYIFEAFRQADGSTTRRFGGTGLGLTIARKLIELQGGEIAVESIPGRGSTFAFTLP 538


>gi|254761651|ref|ZP_05213671.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           Australia 94]
          Length = 613

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 146/394 (37%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVIQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|224535763|ref|ZP_03676302.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522623|gb|EEF91728.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1031

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 173/374 (46%), Gaps = 21/374 (5%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +  + +   LV +    +++ + G+A    D R++  N +  S   + E           
Sbjct: 524 LKNKEELKKLVTLNELVLNNTNSGLAYITRDYRVQWENVSSCSKSLSFEAYKQ------- 576

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNA---Q 537
               C +  +          +  +F   +  L    +L +  V+E    P  L +     
Sbjct: 577 -GELCYKSAHNRTSPCEECILSRAFQSRQTELIK-FKLDNAHVVEVYGTPVFLEDGTADG 634

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++   +VT+     + L        ++D++K++F+ ++S+E+R+PL  I+GF+ L+   
Sbjct: 635 IVIRVDDVTEREEMIKELQIAKMHAEQSDKLKSAFLANMSHEIRTPLNAIVGFSGLM--- 691

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            + + + ++  Y++ I+ ++ +LL L++DILDL+ ++AG ++L Y    L D  N +  S
Sbjct: 692 -MYASDEEKEDYMQIINNNNEMLLKLISDILDLSKLEAGSVELKYEEFDLTDYFNSMFAS 750

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +     I+I  ++  +      DR R+ QI +  ++NA+ ++++G T+ +       
Sbjct: 751 MKQRATNPKIQIVAVNPYQHCLVTLDRNRVAQIITNYVTNAIKYTTEG-TIEMGYEYREE 809

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              F VK++G  IP++    VF+RF       Q  G GLGLSI ++     GG+V   S 
Sbjct: 810 GIYFYVKDSGIGIPDEKKNKVFHRFEKLDEFAQ--GTGLGLSICKAIAEAMGGNVGFESE 867

Query: 778 DEGVTTINCRIPSK 791
               +     +P +
Sbjct: 868 YGKGSLFWALLPCE 881



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 93/259 (35%), Gaps = 36/259 (13%)

Query: 291 IAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           +A D+++ + +  Q       +  IL++L VA+A+++    + + N  F  ++  D+  +
Sbjct: 9   LANDIAEHVKLQQQYDSLYNQSMTILNSLPVAVAVYNAKGKILYFNERFCRIFGTDMEEM 68

Query: 347 ATNPSN--------DELLEFLRSANKLPEQLNW-----KTWKENIFSVYKSSETHKDTWH 393
           A +  N        DE+   +++   +     +       +   +++  +  E +     
Sbjct: 69  AESHPNIYDSPVVTDEIKNAIKAGLPISTSFPYDFGKVDGYITTVYTGIRYLECNGQPIR 128

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
            PNG+    ++          + E++T  ++ E             I      +  F  +
Sbjct: 129 NPNGELASYVI----------IMEDITESLEKEEMLRQSRLKTEIAIKTADIMLWEFDVN 178

Query: 454 GRIKLS-NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            R+  S N       K+    LS   ++  I      +  +          + S  D   
Sbjct: 179 SRLFFSDNEPLNGYDKSRP--LSIDLYLETI------HPEDRKEMVSIMQRMNSGKDFSF 230

Query: 513 SLQGTLELLSDSVLEYSII 531
           + +G ++L   S  +Y  +
Sbjct: 231 TFEGRIKLFGSSEWQYCFV 249



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 54/234 (23%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  ++   V L+ +Y++L       ++ L   VAV+   G+I   N  F  +        
Sbjct: 9   LANDIAEHVKLQQQYDSLYNQSMTILNSLPVAVAVYNAKGKILYFNERFCRI-------- 60

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAII-------TSFDDERKSLQGTLELL--SDSV 525
             GT +  +A +    Y+     D     I       TSF  +   + G +  +      
Sbjct: 61  -FGTDMEEMAESHPNIYDSPVVTDEIKNAIKAGLPISTSFPYDFGKVDGYITTVYTGIRY 119

Query: 526 LEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKN-----------EALRKADEIK 569
           LE +  P+ N     A  ++   ++T+S+  E  L +               L + D   
Sbjct: 120 LECNGQPIRNPNGELASYVIIMEDITESLEKEEMLRQSRLKTEIAIKTADIMLWEFDVNS 179

Query: 570 NSFVQHVSYELRSPLT--------NIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             F          PL         +I  + + +           + + V  +  
Sbjct: 180 RLFFSD-----NEPLNGYDKSRPLSIDLYLETIH-------PEDRKEMVSIMQR 221


>gi|113474406|ref|YP_720467.1| periplasmic sensor signal transduction histidine kinase
           [Trichodesmium erythraeum IMS101]
 gi|110165454|gb|ABG49994.1| periplasmic sensor signal transduction histidine kinase
           [Trichodesmium erythraeum IMS101]
          Length = 569

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 157/386 (40%), Gaps = 33/386 (8%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           +N+ + +Q + +   SE + +   + R++  N  ++ + K     L     +  I     
Sbjct: 191 FNSQITIQLQNLSQDSEQLVIL-ANQRVEKQNRDYQKVEKLGIYILICSLLLSAITTVII 249

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
             Y  +        I    ++  +     L+L   +  E           +   +N   S
Sbjct: 250 AIYTTNSIITPLKVITKVAEEVTEQANFELQLPVTTNDEI--------GELTESLNELIS 301

Query: 549 VRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             AE    L E       A+  K++F+  +S+ELR+PL  IIG++D+L    L       
Sbjct: 302 KVAEYTEQLQEAKLKAEAANRSKSAFLATMSHELRTPLNAIIGYSDILYEDVLEGGYKDF 361

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +E I  +   LL +++DILD++ ++AG + L   +I +N L+ +V  +      +N 
Sbjct: 362 IPDIERIKLAGKNLLEMISDILDISKIEAGQVTLYLESIEVNKLVKDVFSTAKNITEKNR 421

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------ 714
            + +++    LGS  AD  ++ Q+   +LSNA  F+  G T+ L   +            
Sbjct: 422 NKFELVLGENLGSMYADMPKVKQVLINLLSNAAKFTEDG-TITLSVEKVKNNQQKNNQNH 480

Query: 715 -------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
                  +N   +F V + G  I E+  K +F  F        R   G GLGL+I +   
Sbjct: 481 NAKSLSNENYHIVFRVIDTGIGITEEQLKHIFQPFTQADTSTTRKYGGTGLGLAICKRLC 540

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
              G  +++ S     +T     P K
Sbjct: 541 ERMGAEITVKSQLGKGSTFTVWFPEK 566


>gi|331700135|ref|YP_004336374.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954824|gb|AEA28521.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 1025

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 10/227 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  +IG T+LL  +   SL  +Q  Y   I+ S+  LL ++ND+L
Sbjct: 378 KSAFLANMSHEIRTPMNAVIGMTELLSAT---SLTEEQQDYTGVIAQSADGLLTVINDVL 434

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + ++AG ++L+       +++ +    +A +     + +   +DG    +   D  RL
Sbjct: 435 DFSKIEAGKLELDRDAFDPREVIEDALGLLAPRAAAKGLELVAAADGVPPAAVFGDPGRL 494

Query: 688 LQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI   ++ NA+ F+ +G  V+    ++A  D      +V + G  IP +    +F  F 
Sbjct: 495 RQILVNLVGNAVKFTERGEVVVTLSAVRADDDRWRLRIAVADTGIGIPAEQIPRLFRSFS 554

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  RR  G GLGL I      L GG V ++S     +     +
Sbjct: 555 QVDESATRRHGGTGLGLVISRRLAELMGGTVEVASEPGRGSVFTVTL 601


>gi|323702488|ref|ZP_08114152.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532627|gb|EGB22502.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 487

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   L K ++I+  FV +V++E+++PL  + GFT+ +    L     ++ +Y+  I 
Sbjct: 245 LQEKISQLEKQEQIRREFVTNVAHEIKTPLAVMQGFTETMIDG-LVKTEQERDEYLNNIL 303

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  LVN++LDL  ++ G    +     L ++++ V++ +     E +I  ++  +
Sbjct: 304 EEINRLKRLVNEVLDLKRMEEGHFDFDQEPCDLREIIDRVRRKLTQLAVEKDIHFEIGVE 363

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     +  R+ Q+   ++ NA+  +  G  VIL+ +         + + G  I  + 
Sbjct: 364 KNLPLVTCNSDRIEQVLINLIDNAIRHTHTGGRVILRVSSKANQVHLRISDTGEGIAPED 423

Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++ RF          R G GLGL+IV+  +  HGG +++ S     TT N  +P
Sbjct: 424 LPMIWERFYKGDKSRTRARGGTGLGLAIVKMIVEGHGGQINVDSKLNVGTTFNIVLP 480


>gi|91790648|ref|YP_551600.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91699873|gb|ABE46702.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 799

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 147/369 (39%), Gaps = 14/369 (3%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            +             +  D +   +A    + R +  N A+   +  + +++  G  +R 
Sbjct: 175 KERARALRASESQLRQITDTVPALIAYVDAEQRFQFHNLAYEEGFGLKRDQI-HGKTMRE 233

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +              +  +     +D  +K+  G L        +Y +   P        
Sbjct: 234 MMGDALYEKERGKIEEALSGYAVQYDRVQKTADGQLR-------DYIMQYFPRYGEDQDE 286

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             V        +L      LR+ D +K+ FV  VS+ELR+PLT+I G   L+     G L
Sbjct: 287 GKVVGLF----SLGTDVTELRRIDRMKSEFVSTVSHELRTPLTSIRGSLGLIAGGVAGEL 342

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +     V   S +   L+ L+NDILD   +++G M      + L  LL +   +     
Sbjct: 343 PAMAKSLVGIASNNCERLIRLINDILDSEKIESGKMHFELQQVELQPLLAQALAANEGFA 402

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++N+++ + +         D  RL Q+ + +LSNA+ FS   S V ++  R  G     
Sbjct: 403 GQHNVKLALDAPADAVRVSVDSDRLTQVVTNLLSNAVKFSPPASCVHIRLLRSGGRVRVE 462

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I E+  K +F +F         Q+ G GLGL+I  + +   GG +  ++    
Sbjct: 463 VADSGPGILEEFRKRIFQKFSQADTSDTRQKGGTGLGLNISRAIVEQMGGSMGFTTKAGV 522

Query: 781 VTTINCRIP 789
            T  +  +P
Sbjct: 523 GTVFHFELP 531


>gi|254413753|ref|ZP_05027522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196179350|gb|EDX74345.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1022

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 121/240 (50%), Gaps = 7/240 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  EA   A+  K+ F+ ++S+ELR+P+  I+GFT L++  +  SL ++   Y+E I
Sbjct: 543 ELQQAKEAADAANRAKSEFLSNMSHELRTPMNAILGFTQLMQRDQ--SLPAQHQGYMEII 600

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + S   LL L+ND+L+++ ++AG + L      L+ LL  ++     K     +R++V  
Sbjct: 601 NHSGEHLLELINDVLEMSKIEAGRITLAEIDCNLHQLLRRLESMFQLKAKSKGLRLRVQR 660

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---FSVKNNGSS 729
           D  +  ++  D  +L Q+   +LSNA+ F+  G   +  +    G  +   F V + G  
Sbjct: 661 DDTVPQWIRTDEHKLRQVLINLLSNAIKFTENGQVTLEVSGVRQGKTVNLGFKVADTGPG 720

Query: 730 IPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           I ++    +F  F      +    G GLGL I + F+ L GG ++I+S     +    +I
Sbjct: 721 IAKEDRNELFQAFKQTKLGQNTYEGTGLGLKISQKFVQLMGGEITITSELGQGSCFKFQI 780


>gi|190568905|ref|ZP_03021807.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
 gi|190559972|gb|EDV13955.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
          Length = 613

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 146/394 (37%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVIQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|91788333|ref|YP_549285.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91697558|gb|ABE44387.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1049

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 114/656 (17%), Positives = 218/656 (33%), Gaps = 105/656 (16%)

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ-AGDILWANIS 221
            A  R   L      L + + +   ++  +     + +++  +++ +D      +  N +
Sbjct: 172 AAIQRNKDLTQTQESLGQRSAEVAAVNRFLD---SVIETIPDMIFVKDAADLRFVRFNRA 228

Query: 222 YKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
            ++     G    + +G++   LF E       S                          
Sbjct: 229 GEELL---GYSRDELVGKNDYDLFPEAEADAFTSKDQEVLTR------------------ 267

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
                    G+ +D+ +E            ILH  T  I IFD      +       L  
Sbjct: 268 ---------GMVLDIPEEPIHTR--NKGDRILH--TKKIPIFDSKGRPLY-------LLG 307

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           I           D L +     +K  E L W   + N   +   +  ++ T         
Sbjct: 308 ISRDVTEKKKLEDALRKRNEELSKSQEDLQWSNSELNKLRLALEARVNQRT--------- 358

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                           + LT  V+              TID   + V      G ++  N
Sbjct: 359 ----------------QQLTAVVEA---LRESEARTRLTIDTALDAVVAMDAHGLVREWN 399

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
               +++  + +          +     R  +        A        +R  L      
Sbjct: 400 AQAETIFGWKRDEAIGKPLAGLVIPRQHREGHARGLERFLATNEGPILSQRLELTALHRE 459

Query: 521 LSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAER------------------ALTEKN 559
             +  +E SI P+             ++TD  + E                    L    
Sbjct: 460 GREFPVELSITPMLLQGEWTFSAFLRDITDRKQMEERTLNLNRELEQRVAQRTTELVAAR 519

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           EA   A+  K++F+  +S+E+R+P+  + G  +LL    L  L++ Q   +  +  SS  
Sbjct: 520 EAADTANRAKSTFLATMSHEIRTPMNGMFGMLELL---GLTELDTDQRATLAIVRESSQS 576

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-G 678
           LL +++DILD + ++AG + +      + D++  V+   A       + +K  +D ++  
Sbjct: 577 LLCIIDDILDFSKIEAGKLTVRPEVASIKDVIEHVRNMYAGNASGRGLLLKHGTDPQISP 636

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDM 734
           + + D  RL QI + ++SNA+ F+S+GS  I    +          F V + G  +  + 
Sbjct: 637 ALMFDPLRLGQILNNLVSNALKFTSRGSIEIKAELIARTNGEDQVRFVVTDTGMGVSAED 696

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F        R   G GLGL+I      +  G V + S     TT+   +
Sbjct: 697 QQRLFQPFTQGGGDTARWAGGTGLGLTICRRLAGMMNGTVEMVSELGKGTTMILTL 752


>gi|237801067|ref|ZP_04589528.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023924|gb|EGI03981.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 1026

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 164/388 (42%), Gaps = 23/388 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E       +     +D     + V   +G +++ N ++   +     
Sbjct: 558 AWMQRQIRQREAAERALGDQFEFMRALVDGTPHPIYVRDREGLLRICNDSYLQTFSARRE 617

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  ++   A  T+   +R    G  +L     + + I+P
Sbjct: 618 DVIGKSTAAGVPGNAFEASEYAADYEQVMASGTALILDRPLRIGERQL----TIYHWILP 673

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  ++++++  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 674 FRDSLGEVQGIIGGWIDISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 733

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 734 IGMLELALKRADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERAN 790

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 791 LRQLVESVVRVFDGLARQKDLSLVLALDSRINTDVLIDPLRFKQILSNLVSNAIKFTQDG 850

Query: 706 STVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLG 757
             V +     +            V+++G  I  +  + +F  F    + GQ  R G GLG
Sbjct: 851 -QVKISLQAGDTAAPQQLHLHVMVQDSGIGISSEDQQRLFEPFAQVDNTGQMARTGAGLG 909

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTIN 785
           L I  S   + GG++ + S+    T ++
Sbjct: 910 LVICRSLCVMMGGNLQLDSAPGQGTRVS 937



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 12/160 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV- 232
           +  ++ +     + L +     + L D     ++ RD+ G +   N SY +         
Sbjct: 560 MQRQIRQREAAERALGDQFEFMRALVDGTPHPIYVRDREGLLRICNDSYLQTFSARREDV 619

Query: 233 ---FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS---YKIVRVLNSF 286
                 A          E         A              G  +    + I+   +S 
Sbjct: 620 IGKSTAAGVPGNAFEASEYAADYEQVMASGTALILDRPLRI-GERQLTIYHWILPFRDSL 678

Query: 287 GEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           GE     G  ID+S+   + ++L    E     + A + F
Sbjct: 679 GEVQGIIGGWIDISERRQLIEELQAAKEQADAASRAKSTF 718


>gi|281418070|ref|ZP_06249090.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|281409472|gb|EFB39730.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316939890|gb|ADU73924.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 589

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 170/395 (43%), Gaps = 25/395 (6%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            + + S    G + + F  +  +++   +  NT        ++ ++ G+     + ++ L
Sbjct: 215 RIKLKSKDELGQLAVHFNKMASKLERTISDLNTKKIELESIVESITNGIVAVDGNNKVIL 274

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA  +++  + +    G  I N                   +++     + K L+  +
Sbjct: 275 INPAAFTVFNLDADAEILGDDIENHIKNSQ-----------INSLLKDAIQKNKPLEAEV 323

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             +   VL  +  P+    + +        ++           +RK ++I+  FV +V++
Sbjct: 324 A-IDGRVLLVNASPIRPKDSDIDNSGGIVFIQ-------DITKVRKLEQIRTEFVSNVTH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+T+I GF + LK   + +      +++E I   +  L  L+NDIL L+ ++  + 
Sbjct: 376 ELKTPITSIRGFIETLKNGAMNN-PVVAERFLEIIDIEAERLHELINDILLLSEIETKLK 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
             N     L  ++++V + +     E  I +      ++    A+  R+ Q+   ++ N 
Sbjct: 435 DTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL-MKANINRMKQLIMNLVDNG 493

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + ++ +  +V +   R++G  + SVK+ G  IP      +F RF        R   G GL
Sbjct: 494 IKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSAHIPRIFERFYRVDKGRSRGMGGTGL 553

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSIV+  +NL+ G + ++S     T    +IP +
Sbjct: 554 GLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIPCQ 588


>gi|89076676|ref|ZP_01162968.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34]
 gi|89047657|gb|EAR53262.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34]
          Length = 701

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 113/551 (20%), Positives = 217/551 (39%), Gaps = 69/551 (12%)

Query: 293 IDVSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNR---SFVELWEIDLAFLAT 348
           ID+ +     +QL    E IL  ++   A+   N   Q  N       +    D A + T
Sbjct: 14  IDLLRSQERENQLQDENEAILEGIS---AMAGANDKRQVFNSLLEVLRKFIGFDQALVLT 70

Query: 349 NPSNDELLEFLRSANK-------LPEQLNWKTWKENIFSVYKSSETHK------DTWHLP 395
                E+L+ L S +        L E    +       ++Y   +  +      +  +  
Sbjct: 71  REDEQEMLDVLVSTDNRFGTNSWLMESTFRRAINGECIALYSPKDIIEFSTQSVEALNDF 130

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +   L  +  S+     I M  + +       +   ++      +       A+   D R
Sbjct: 131 SSALLTGVKVSSSDAVMILMSHDKS---QFTPRCRRVLNRFRPLL-----ARAIIDIDYR 182

Query: 456 -------------IKLSNPAFRSLWKT---EENRLSPGTHIRNIAA--------TCSRYY 491
                        +  S   F+   KT       +    +   I+         +C  + 
Sbjct: 183 ERLQSLVAARTQQLTFSQQRFKDFAKTAGDWFWEIDVDYNFTYISEPQVANTQISCDNFI 242

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLS-----DSVLEYSIIPLPN-----AQTMLT 541
              + + LF   +TS   ++   +     LS     D    +S  P  +          T
Sbjct: 243 EFFNNYPLFQNKLTSKLSQQVVFEDLEWNLSSVDNTDQWYSFSGTPYFDKYGKLQGFRGT 302

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T   R    L E  +    A++ K+ F+  +S+E+R+PL  ++G   L+++  L  
Sbjct: 303 AKDITSRKRRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLG---LMESLSLSG 359

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN+KQ+ ++  +  S+ +LL ++NDILDL+ +++G  +L  S I + + +  V   +A +
Sbjct: 360 LNNKQNLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAPQ 419

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +NN++ +   D  +      D+ R+ Q+   ++ NA+ F+S GS V + A + + +  
Sbjct: 420 ATKNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGS-VRVVARKVDDNIE 478

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  I +D   ++FN F        RR  G GLGL+I +  I    G +S+ S  
Sbjct: 479 IAVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMDGTISLESEL 538

Query: 779 EGVTTINCRIP 789
              +     IP
Sbjct: 539 GTGSCFKISIP 549


>gi|332711384|ref|ZP_08431316.1| multi-sensor signal transduction histidine kinase [Lyngbya
           majuscula 3L]
 gi|332349933|gb|EGJ29541.1| multi-sensor signal transduction histidine kinase [Lyngbya
           majuscula 3L]
          Length = 669

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/392 (17%), Positives = 158/392 (40%), Gaps = 21/392 (5%)

Query: 412 TIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFRSL 466
            +  F ++  +++  E +    +  +   ++ L    ++G  +   + ++ L NP  R +
Sbjct: 249 LVSSFNDMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDTNFQVMLVNPTARRI 308

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +  EE  +     + ++    +            A   T  + E +  +     L+  V 
Sbjct: 309 FGWEEQDIVGKNVLYHLPDVVTMELTRPLYQMATADKQTETERESREGEEFRITLTKPVS 368

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
               I L             ++++      +      + ++ K++F+ +VS+ELR+PL N
Sbjct: 369 RTVRILLS-----KVLNQYRENIKGIAITVQDITREVELNQAKSNFISNVSHELRTPLFN 423

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I  F + L         +K+ ++++  +  +  L  LVND+LDL+ +++  +        
Sbjct: 424 IKSFIETLHDYDEKLSEAKRKEFLDTANRETDRLTRLVNDVLDLSRLESCRI-YQLEPFD 482

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +   + +  ++      +  I +    +  L   +     LLQ+ + ++ N++ F+  G 
Sbjct: 483 IVRPIEQTLRTYQLNARDQTIELAQEIEPDLPPVMGHYDLLLQVLANLVGNSLKFTESGG 542

Query: 707 TVILKAARDN---------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGL 756
            V+++A +                 + + G  I  +  +++F+RF    +R     G GL
Sbjct: 543 RVVIRAYQLEPELNTKEGKDRVRIEISDTGIGIAPEDQQAIFDRFFRVENRVHTLEGTGL 602

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSIV + I  H   V++ S     TT    +
Sbjct: 603 GLSIVRNIIERHHSRVNLVSEVGVGTTFWFDL 634



 Score = 41.5 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 42/137 (30%), Gaps = 7/137 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +  +      ++  +     + D N  +   N +   ++  +   +        L + 
Sbjct: 269 EELTAEKAKLETLVSTIADGAVLIDTNFQVMLVNPTARRIFGWEEQDIVGKNVLYHLPDV 328

Query: 359 LRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVT------SNPRGG 411
           +      P        K+       +  E  + T   P  +T+ ++++           G
Sbjct: 329 VTMELTRPLYQMATADKQTETERESREGEEFRITLTKPVSRTVRILLSKVLNQYRENIKG 388

Query: 412 TIWMFENLTVQVDLETK 428
                +++T +V+L   
Sbjct: 389 IAITVQDITREVELNQA 405


>gi|298384034|ref|ZP_06993595.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298263638|gb|EFI06501.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 631

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 130/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          +  +Y
Sbjct: 393 KAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PDIEDRKEMREY 449

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILD++ ++AG      S I +N  + E++QS+  ++ +  + +
Sbjct: 450 ADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTL 509

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ S  + NA+ F+  GS  +    +D     F V + G  
Sbjct: 510 TFTERLPECTLYTDKNRLIQLISNFVINAIKFTQTGSIRMGYRLKDANTICFYVSDTGCG 569

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + E+ CK VF RFV      Q  G GLGLSI +  I+  GG + + S +   +T    +P
Sbjct: 570 MSEEQCKHVFERFVKYNPFVQ--GTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627

Query: 790 SKE 792
            ++
Sbjct: 628 YQQ 630


>gi|169335485|ref|ZP_02862678.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM
            17244]
 gi|169258223|gb|EDS72189.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM
            17244]
          Length = 1313

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             + K+ F+  +S+E+R+P+  IIG T++        L +   +Y+E IS SS  LL+++N
Sbjct: 937  SKAKSDFLSRMSHEIRTPMNAIIGMTNIAMEE--NGLKNSTKEYLEKISTSSEYLLSIIN 994

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            DILD++ +++G MKL+ S   L +L++EV+  I  +  +  +   V ++        D  
Sbjct: 995  DILDMSRIESGKMKLSPSNFSLTNLIDEVETLIRPQAEDKELNFNVKANVNDDVLYGDYM 1054

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFN 740
            R+ QI   +L NA+ F+     ++L    ++         F VK++G  I  +  + VF+
Sbjct: 1055 RINQILINLLGNAIKFTQSKGNILLCVREEDYNDKQSKVTFIVKDDGIGISSENKERVFH 1114

Query: 741  RFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F            G GLGL+I  + + L G ++ + S     +T    +
Sbjct: 1115 AFEQAEDDTSIHYGGTGLGLAICNNLVKLMGSNIELESDLGKGSTFKFTL 1164


>gi|239995114|ref|ZP_04715638.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 490

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 10/259 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +VT   + E+ L +  E   ++  +K+SF+  +S+E+R+P+  I G   L+ +
Sbjct: 76  HYIGFQQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLMAS 135

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S+   L  +Q  Y+     S   LL++VNDILD + ++AG +++  +   + + L  ++ 
Sbjct: 136 SE---LTEEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIEENPFDILESLENLQS 192

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             A    E  + +    D +    V  D  R  QI S +L NA+ F+  G   +  + + 
Sbjct: 193 QYAIMCQEKGLALHFHFDLQGFHVVQGDDVRFRQILSNLLGNAVKFTDSGCIEVTTSIQQ 252

Query: 716 NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
           N D     + SVK+ G  I +D   ++F+ F        R   G GLGLSI +    L G
Sbjct: 253 NADNSLKLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELMG 312

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S     +T +  I
Sbjct: 313 GDIKLESVKGHGSTFSFTI 331


>gi|117929307|ref|YP_873858.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus
           11B]
 gi|117649770|gb|ABK53872.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus
           11B]
          Length = 637

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 85/404 (21%), Positives = 166/404 (41%), Gaps = 18/404 (4%)

Query: 398 QTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           + L +++   P  G          +++T +   E       +          + +AV GP
Sbjct: 90  RVLQIVLNPEPTAGRRIRAVFAFLQDVTERRAAERTVADRERQLRAITSASPDVIAVVGP 149

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           D R++  + A   L     +    G  I        R         +       F    +
Sbjct: 150 DLRVRFVSDASTGLTGIRASD-RIGARIGETVHPDDRPALLDGIRAVLTGAAEDFVVRVR 208

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADE 567
           +   +   +   VLE    P        T     F ++++ +  E  L    EA   A  
Sbjct: 209 TRHASGRYI---VLEGHGRPALGPDGAPTAAVIVFRDISERLALEAELVRAKEAADAASA 265

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+ELR+PL  I+GF+ LL+  +   L  +Q ++V  I  +   LL+L+N++
Sbjct: 266 AKSDFLSRMSHELRTPLNVILGFSQLLQMER---LTDEQQEWVNQIFKAGRHLLDLINEV 322

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD+  +++G + L+   + L D++ E   ++A    E  +    + +    +  ADRQRL
Sbjct: 323 LDITRIESGRLALSLEAVSLRDVIGETMVALAPLAAEREVTADWVIEDDDVTVRADRQRL 382

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NA 746
            Q+   ++ NA+ ++ +G TV++ A R     +  V + G  I  +  + +F  F    A
Sbjct: 383 RQVMLNLVVNAIKYNRRGGTVLVSARRCADRALIRVADTGIGIAPEHIERLFVPFDRLGA 442

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 G G+GL +    + +  G +++ S+    +     +P 
Sbjct: 443 DAIDAEGTGVGLPLTLRLVQVMDGELTVDSTPGDGSVFTVALPL 486


>gi|258592021|emb|CBE68326.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 528

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 28/266 (10%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  +   +A   K+ F+ ++S+ELR+PL +IIGF  LL+   + SL  K+ Q + +
Sbjct: 253 RQLLEAKQQAEEASRHKSLFLSNMSHELRTPLNSIIGFASLLQDPIVSSLPEKELQLMRH 312

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS S   LL L+ND+LD++ V+AG + L      L + +     +   +  +    + + 
Sbjct: 313 ISTSGEHLLALINDLLDISKVEAGKLILQPQAFPLGEAIEAAVYTFRPQAAQKQQDLGLS 372

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------------------- 713
            D  +    AD  R  QI   +LSNA+ F+  G  + + A                    
Sbjct: 373 MDHDMPIIKADPIRFKQILYNLLSNAVKFTPVGGRIKVAARIAPGVGHQKAGSNDVDPLH 432

Query: 714 ------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
                         +V + G  I  +    +F  F         Q +G GLGL++ +  +
Sbjct: 433 PIPCTQYPGECVEIAVSDTGIGIRCEDLSKLFQLFTQLEPTLTKQFQGTGLGLALTKQLV 492

Query: 766 NLHGGHVSISSS-DEGVTTINCRIPS 790
            LHGG +  +S      +T   R+P 
Sbjct: 493 ELHGGTIGAASEGPGRGSTFTVRLPL 518


>gi|229035123|ref|ZP_04189069.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271]
 gi|228728189|gb|EEL79219.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271]
          Length = 613

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|75909433|ref|YP_323729.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75703158|gb|ABA22834.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 650

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 162/394 (41%), Gaps = 29/394 (7%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   ++ L    ++G  +   + ++ L NP  R
Sbjct: 247 GELILNFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQVILVNPTAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++  E      G+++ +      +       +++ A    S +      + TL   S+ 
Sbjct: 307 HIFGWEGADDVVGSNVLHHLPPTVQMEITRPLYEMAAGECDSAE-----FRLTLNQPSNR 361

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +   +  + N Q         +S++      +      + +E K+ F+ +VS+ELR+PL
Sbjct: 362 TIRILLTTVLNLQ--------RESIKGIAITVQDITREVELNEAKSQFISNVSHELRTPL 413

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  F + L          ++ ++++ ++  +  L  LVND+LDL+ +++G    ++  
Sbjct: 414 FNIKSFIETLHDYGEDLSIEERQEFLQTVNHETDRLTRLVNDVLDLSKLESGR-SYSFDG 472

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L   + +  ++      +  I +       L   + +   LLQ+ + ++ NA+ F+  
Sbjct: 473 VDLAQAIEQTLRTYQLNAKDKGIELIQDVAPGLPLVLGNYDLLLQVLANLVGNALKFTPS 532

Query: 705 GSTVILKAAR---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGV 754
           G  + ++                    V + G  I  +  +++F+RF    +R     G 
Sbjct: 533 GGKIAIRTYVLHTKPNSPNQPTQVRIEVSDTGIGIAPEDQQAIFDRFFRVENRVHTLEGT 592

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGLSIV + +  H   V++ S     TT    +
Sbjct: 593 GLGLSIVRNIVERHRSKVNLVSEVGVGTTFWFDL 626


>gi|302528985|ref|ZP_07281327.1| two-component system sensor kinase [Streptomyces sp. AA4]
 gi|302437880|gb|EFL09696.1| two-component system sensor kinase [Streptomyces sp. AA4]
          Length = 1586

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             A  + +  ++ ++ QG L   +  + E +   L   Q     V   +  +A + L E+ 
Sbjct: 1103 LAQELRARSEQLQAQQGELRRSNTELAEKAA--LLAQQNRDIEVKNIEIEQARQELEERA 1160

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              L  A + KN F+ ++S+ELR+PL + +    LL  +  G+L  KQ Q+ + I A+ + 
Sbjct: 1161 GQLTVASQYKNEFMANMSHELRTPLNSALILAKLLSENPEGNLTEKQIQFAKTIYAAGSD 1220

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            L  L+NDILDLA V+AG + L  S + L +L+N V+        +  +   V+ D  +  
Sbjct: 1221 LQQLINDILDLAKVEAGKLDLQMSDVTLPELVNYVESLCRPLTADKGLEFAVLIDPPVPG 1280

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------------FSVKNN 726
            S   D  RL Q+   +LSNA  F+ +G   +     D  +              F+V++ 
Sbjct: 1281 SVHTDEHRLQQVLRNLLSNAAKFTDEGGVRLHIRMADPEEVEQESLRSAAGIIAFAVEDT 1340

Query: 727  GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IPE+  + +F+ F         +  G GLGLSI +    L  G + +SS     +T 
Sbjct: 1341 GIGIPEEKLEVIFDAFRQADGTTSRKYGGTGLGLSISQQLTELLSGELRVSSVPGKGSTF 1400

Query: 785  NCRIP 789
               +P
Sbjct: 1401 TLYLP 1405


>gi|154147903|ref|YP_001406226.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
 gi|153803912|gb|ABS50919.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
          Length = 1385

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 12/246 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T + EA   A++ K+ F+ ++S+E+R+PL  +IGFT+LL+ ++   L+ +Q  YV+ I  
Sbjct: 392 TYQKEAAEDANKAKSIFLANMSHEIRTPLNGVIGFTELLRNTE---LDEEQQDYVDTIEQ 448

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL ++N+ILD++ +++  ++L               +    K  E NI I +  D 
Sbjct: 449 SSENLLTIINNILDVSKIESNKVELEDILFNPIQDFESAVEIYVAKATEKNIDILLYIDP 508

Query: 676 KL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGS 728
            L      D  ++ ++   ++SNA+ F+ +G  + ++  R      +     FSV++ G 
Sbjct: 509 TLIHHLYGDITKIKEVLINLMSNAVKFTPEGGMIAVEIVRVKSDNPNEATVNFSVEDTGV 568

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ED   +VFN F         +  G GLGL+I   ++ + GG + + S+    T    
Sbjct: 569 GIAEDKLVNVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLEVKSTLGKGTRFYF 628

Query: 787 RIPSKE 792
            +  KE
Sbjct: 629 TLTFKE 634


>gi|312622291|ref|YP_004023904.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202758|gb|ADQ46085.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 575

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 157/371 (42%), Gaps = 34/371 (9%)

Query: 425 LETKY---NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE K    N L K     +D L  G+  F  + RI   N    ++    E  L  G  + 
Sbjct: 224 LEEKIGESNILRKRLTSLLDSLDIGIIFFDMNKRILTFNRGAENIL---ETNLKVGLSLL 280

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                C R Y      +LF  +     +E++             +E SI        +  
Sbjct: 281 E----CVRVY------ELFEFLFQQDINEKE-------------IEISINNKTKFLKINK 317

Query: 542 FVNVTDSVRAERALT-EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                +  +    L       L+K + I++ FV +VS+EL++PLT+I GF + LK   + 
Sbjct: 318 KKISYEDNKEGILLILSDITFLKKLERIRSDFVANVSHELKTPLTSIKGFVETLKDGAID 377

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             +     ++  I      L+ L+ND+L L+ ++   M +    +V+ +++ E+ + +  
Sbjct: 378 DKDVAIK-FLNIIEVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKI 436

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K  + NI++ +     L   +  R  L QIF  ++ NA+ ++ +   V +   + +   +
Sbjct: 437 KAEKKNIQLDIKVQEGLEMNIY-RDWLKQIFINLIDNAIVYNKENGKVWVTVEKLDNLIV 495

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             VK+ G  IP    + +F RF         +  G GLGLSIV+  + L+GG V + S +
Sbjct: 496 IKVKDTGIGIPGREVERIFERFYRVDKGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQE 555

Query: 779 EGVTTINCRIP 789
              +     IP
Sbjct: 556 GIGSEFTVTIP 566


>gi|167647510|ref|YP_001685173.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167349940|gb|ABZ72675.1| GAF sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 1942

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 168/374 (44%), Gaps = 27/374 (7%)

Query: 433  VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
             + Q   +D L E +      G +  +  A        E           + A       
Sbjct: 1125 NETQQAFLDQLMESI------GIVLSTIAANMRTEGLLE---QSQLLTSELQAQQGELKK 1175

Query: 493  ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
             +D  +L AA +   ++  +S Q  L+  +  + + ++  L +AQ        T+  +A+
Sbjct: 1176 TNDRLELQAASLRQSEELLRSKQDELQQTNAELEDKAM--LLSAQNKQVEAKNTEVEQAK 1233

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             AL EK E L    + K+ F+ ++S+ELR+PL +++  + +L  +  G+L+ KQ ++ + 
Sbjct: 1234 AALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSKMLSENAQGNLSDKQVEFSKN 1293

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I ++ T LL L+NDILDL+ +++G + L+   +    L ++ +++ A    +  I  ++ 
Sbjct: 1294 IHSAGTDLLGLINDILDLSKIESGTVTLDIGEMAFTSLRDQTQRTFAQLAQDKKIDFQID 1353

Query: 673  SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------- 718
             D  L  S   D +RL Q+   +LSNA  F+  GS  +  +  ++G              
Sbjct: 1354 IDPALPRSMYTDDKRLQQVIKNLLSNAFKFTQVGSVRLSVSRAESGWASGNDHLNKAGQV 1413

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              FSV++ G  IPED  + +F  F         +  G GLGLSI      L GG + + S
Sbjct: 1414 LAFSVEDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLSISREITRLLGGELKVVS 1473

Query: 777  SDEGVTTINCRIPS 790
                 +T    +P 
Sbjct: 1474 IPGSGSTFTLYLPL 1487


>gi|160880969|ref|YP_001559937.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans
           ISDg]
 gi|160429635|gb|ABX43198.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans
           ISDg]
          Length = 860

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 164/375 (43%), Gaps = 35/375 (9%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           ++ +   +   I+ + E + V   D  +   NPA + L+   +        I  + +  +
Sbjct: 224 FDIIHTARDSVIEVMDEALVVVDADFHLLDFNPAAKKLFPELK--------IEVLNSPLN 275

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVT 546
           +  NE D        I  F  E ++    L  +  +D ++ +S              ++T
Sbjct: 276 KLSNELD-CLFHQNQIYEFQKENRTYNAHLNKIYYNDDIVGHSA----------WIFDIT 324

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +S    + L E  E   KA+  K+ F+ H+S+E+R+PL  IIG TD+L        + + 
Sbjct: 325 ESNNYMKNLIEMREQAEKANSAKSIFLAHMSHEIRTPLNAIIGLTDILLHK---DTDFEL 381

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  I  +   LL+L+ND+LDL  +++G + L      L  +++EV   I  K+    
Sbjct: 382 HNDILNIKHAGGTLLSLINDVLDLTKIESGKLTLVDEPYKLTSVVHEVINIIGVKLMSKP 441

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDNGD 718
           + ++V    ++   F  D  RL Q+   +++NA+ F+ +G T+ L+              
Sbjct: 442 VSLQVSISDQIPKYFYGDELRLRQVLINLMNNAVKFTERG-TISLQVELSSFDLDTQTAQ 500

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            IF V++ G  I +D  K +F+ F   +        G GLGL+I +  I   GG + + S
Sbjct: 501 LIFHVRDTGLGIAKDDQKRIFHSFEQGSVGSDVLVEGSGLGLTICKRIIESAGGAIKVKS 560

Query: 777 SDEGVTTINCRIPSK 791
                +  +  +P K
Sbjct: 561 ELGVGSDFSFTLPQK 575


>gi|2599570|gb|AAB84171.1| hybrid histidine kinase [Dictyostelium discoideum]
          Length = 709

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/412 (21%), Positives = 168/412 (40%), Gaps = 23/412 (5%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           Q +H +    P        E L  +++     +   K     +D + + VA+   +G + 
Sbjct: 31  QQIHYMRKQKPDHEKTR--EELIEEINHLRAVSNSNKNARIMLDEMYQFVALLDVNGNLL 88

Query: 458 LSNPAFRSLWKT------------EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
             N                          +   +I N+     +                
Sbjct: 89  DVNEPALQGGGMIRSSIQGIPFWDCSRWATSQENIDNVREAVHKASKGEFIRYETEIFCK 148

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S   E+ ++  +L  L +   E S+I           +   +  R    L    E +++ 
Sbjct: 149 SAGTEKITIDFSLMPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKEL 208

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           DE+K  F  +VS+ELR+PL  I+G TD L   +   +N    + +E ++ ++  LL +VN
Sbjct: 209 DELKTQFFANVSHELRTPLALIVGPTDKLLKDENVDIN--VRKDLEIVARNARGLLKIVN 266

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++LD++ ++AG M LNYS + L    + +         E ++   +I+  +      D  
Sbjct: 267 NLLDISRLEAGKMNLNYSMVNLGQTAHLIASCFEILAREKSLDFSIITPSEPMMAAIDAD 326

Query: 686 RLLQIFSKILSNAMDFSSKGST-----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           ++ ++ + ++SNA  F+  G            + +   F   V + G  IP+++ + +F 
Sbjct: 327 KMQRVITNLISNAFKFTPSGGAGKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFE 386

Query: 741 RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           RF  V  +   +  G GLGLSIV+ F+ LHGG V+I +   G      R+P 
Sbjct: 387 RFRQVDGSSTRKHGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLPL 438


>gi|153833234|ref|ZP_01985901.1| signal transduction histidine kinase [Vibrio harveyi HY01]
 gi|148870505|gb|EDL69420.1| signal transduction histidine kinase [Vibrio harveyi HY01]
          Length = 1200

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 154/373 (41%), Gaps = 20/373 (5%)

Query: 422 QVDLETKYNT-LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           + + ET+      K     +D L   + +   + +  L+N  F ++              
Sbjct: 530 RKEYETQIRQKQNKWLSSVLDQLPNKILISDENNKQILANKPFINMLSRCNVDKGITDQE 589

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R      +R    SD      ++ +  D   +  Q TL           + P    Q  +
Sbjct: 590 REQVLDLTRECVRSDSESTETSLCSLGDKHYRVRQQTL-----------LHPEEGTQYRM 638

Query: 541 TFVNVT-DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           T  +   +  + E AL   N    +A E +  F+  VS+ELR+P+  ++G  +LL+    
Sbjct: 639 TVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLMELLEQDL- 697

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +  + ++    S+  L   VNDILD + +DA  ++L+     +   L    +S  
Sbjct: 698 --ERKESKELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQELGATLRSFE 755

Query: 660 TKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +   ++  ++  +       V D  R+ QI + +LSNA+ F+ +G  VI+        
Sbjct: 756 KIIERKSLAFELNWTPTPHALVVLDWLRVSQIINNLLSNAVKFTEEG-NVIVSVHVSPTQ 814

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  +      ++F  FV       RR  G GLG+SIV+S +++  G + + S
Sbjct: 815 LEFKVQDTGCGMNSAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLVDIMEGTIEVDS 874

Query: 777 SDEGVTTINCRIP 789
             E  TTI  R+P
Sbjct: 875 QTEQGTTITVRLP 887



 Score = 40.7 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 22/193 (11%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTY--EILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEI 341
           G     I   +  T   Q  + +   +L  L   I I D+N      N+ F+ +     +
Sbjct: 522 GHLTRTIKRKEYETQIRQKQNKWLSSVLDQLPNKILISDENNKQILANKPFINMLSRCNV 581

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           D          +++L+  R   +   +    +        Y+     +   H   G    
Sbjct: 582 DKGITDQE--REQVLDLTRECVRSDSESTETSLCSLGDKHYR--VRQQTLLHPEEGTQYR 637

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + V           F++++     ET          + I+     +AV   + R  ++  
Sbjct: 638 MTV-----------FDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIA-- 684

Query: 462 AFRSLWKTEENRL 474
           A   L +  E  L
Sbjct: 685 AMMGLMELLEQDL 697


>gi|73666846|ref|YP_302862.1| sensor histidine kinase [Ehrlichia canis str. Jake]
 gi|72393987|gb|AAZ68264.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Ehrlichia canis str. Jake]
          Length = 470

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 5/244 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQY 609
           A   L E  E   + +  K+ F+ +VS+ELR+PL +IIGF++++K+  +G++++    +Y
Sbjct: 217 ANLKLKEAKEVAEQENISKSQFLANVSHELRTPLNSIIGFSEMMKSESMGAIDNVHYKEY 276

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S   LL+L+NDILD + V+A  + + +    L+ +++     +  +  +  +++
Sbjct: 277 INDIHNSGVHLLSLINDILDFSKVEANKLVVEFVKFDLSKIISSCFNMMVPRAEQAKVKL 336

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNG 727
           + +        VAD +R+ Q+   +LSNA+ F+ +   V L      +       V +NG
Sbjct: 337 EKVLPSNKVIMVADPKRMKQVIINLLSNAIKFTPENGVVKLVVEYNIEEKLIDIEVIDNG 396

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +     V + F  V + H  +  G GLGL + +  + L  G   I S     T + 
Sbjct: 397 IGIAQQDLYKVMSIFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFKIKSEPNLGTIVT 456

Query: 786 CRIP 789
              P
Sbjct: 457 LTFP 460


>gi|168214234|ref|ZP_02639859.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170714323|gb|EDT26505.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 571

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 161/382 (42%), Gaps = 43/382 (11%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           F  +  Q+++   ++          +  +  GV  F  D  + + NP  + ++      +
Sbjct: 222 FNYMAEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEII 281

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPL 533
                            N+   +     ++ +F DE+  ++  +    D  +L+     +
Sbjct: 282 G----------------NKLLDYITDKEVLKAFFDEKDRVEIEVNYNDDPKILKIRKASI 325

Query: 534 PNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            N      T++   ++TD  + E               +++ FV ++S+EL++PLT+I G
Sbjct: 326 INEPEIIGTVVVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKG 371

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F + L+       +  +++++  I   S  L  L+ DIL L  ++     +      +++
Sbjct: 372 FAETLR---YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDE 427

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + +V   +  +  +  + I + ++      + D+ +  Q+   ++SN++ ++ KG  V 
Sbjct: 428 EIEKVYMLLNDQAKKKGVEIFLDTNSN-CVLMGDKDKFKQMLLNLVSNSVKYTEKGGKVR 486

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +++   + + I  +++NG  I  +    +F RF         +  G GLGL+IV+  + L
Sbjct: 487 VESYNSDMNLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRL 546

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
             G ++++S     T I   IP
Sbjct: 547 FDGEINVTSELGVGTKIVIAIP 568



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           +     +   ++S+    NF + V      +    +I R+  SF      ++++ E   +
Sbjct: 183 ILNPLKELEQLTSTIASGNFHKRVKINSKDD----EIQRLGKSFNYMAEQLEITMERFKD 238

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            Q      IL ++   +  FD++  +   N    +++ I    +        LL+++   
Sbjct: 239 KQ-NGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNK-----LLDYITDK 292

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV----IVTSNPRGGTIWMFEN 418
             L    +            +      +  +  + + L +    I+      GT+ + ++
Sbjct: 293 EVLKAFFD------------EKDRVEIEVNYNDDPKILKIRKASIINEPEIIGTVVVIQD 340

Query: 419 LTVQVDLE 426
           +T    LE
Sbjct: 341 ITDIKKLE 348


>gi|42784659|ref|NP_981906.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
 gi|42740591|gb|AAS44514.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
          Length = 613

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    I   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWIDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|332524127|ref|ZP_08400357.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107466|gb|EGJ08690.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 1062

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 146/367 (39%), Gaps = 12/367 (3%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                  +D++  GV     DGR+  +NP   ++       L     + +I+    R  +
Sbjct: 554 QDRLRGILDNVPIGVMFADLDGRLLDTNPCLCTMLGRSAEELVR-CSLDDISHPDEREAD 612

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-----EYSIIPLPNAQTMLTFVNVTD 547
                 L A   ++   + + L+     L    L     + S  P   A           
Sbjct: 613 RQALRTLRAGGASTVRRQTRLLRADGAALHARTLFTLLHDASGQPWRLAGVAEDITEHRR 672

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              +ERAL         A+  K  F+  +S+ELR+PL  +IGF  LL   +   L   Q 
Sbjct: 673 LEESERAL----HRAEAANRAKTEFLSRMSHELRTPLNAMIGFAQLLGLDRDPPLAPHQR 728

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++   +  +   LL ++ND LDLA ++ G ++L+   + L   +    + IAT      +
Sbjct: 729 EWSTQMLRAGWHLLAMINDTLDLARLETGAVQLDLRPLDLRSAVGASIEMIATAAERMGV 788

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARDNGDFIFSVKNN 726
            +      +  + +AD  RL Q+ + +LSNA+ ++  G TV++   A D+      V++ 
Sbjct: 789 TVDAELAPEALAVLADDTRLKQVLTNLLSNAVKYNRPGGTVVVESLAPDDEHVQLRVRDT 848

Query: 727 GSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  +  +    +F  +      +    G G+GL I      L GG +   S+    +   
Sbjct: 849 GLGMTPEQVAGLFQPYNRLGREQSTIEGTGIGLVISRRLAELMGGTLDGDSTAGSGSVFT 908

Query: 786 CRIPSKE 792
             +P  E
Sbjct: 909 LTLPRAE 915



 Score = 41.5 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 23/143 (16%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL-----------ATNPSNDEL 355
               IL N+ + +   D +  L   N     +       L               ++ + 
Sbjct: 556 RLRGILDNVPIGVMFADLDGRLLDTNPCLCTMLGRSAEELVRCSLDDISHPDEREADRQA 615

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L  LR+      +   +  + +  +++  + T     H  +GQ   +            +
Sbjct: 616 LRTLRAGGASTVRRQTRLLRADGAALH--ARTLFTLLHDASGQPWRL----------AGV 663

Query: 416 FENLTVQVDLETKYNTLVKVQGE 438
            E++T    LE     L + +  
Sbjct: 664 AEDITEHRRLEESERALHRAEAA 686


>gi|330875153|gb|EGH09302.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 1170

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 5/334 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + E S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLAEQSQA--LADQRDALDRNNEELNIAQGELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPSENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEV 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +FSV+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LSI      L GG +S++S+    +     +P +
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQ 719


>gi|312888984|ref|ZP_07748544.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298502|gb|EFQ75611.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 621

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 109/639 (17%), Positives = 235/639 (36%), Gaps = 57/639 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFD-SLDFLVWHRDQAGDILWANISYKKN 225
           R  +L    +++  +     ++   +     L D       W              Y   
Sbjct: 21  RFRALVTATADIVYSMSADWRVMRQLDGRGFLLDTHEPIANWITK-----------YVHP 69

Query: 226 TETEGI--VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
            + E +    ++AI E++K+F  E++ R++ +             +   N K  +     
Sbjct: 70  DDYEKVKTTIREAI-EAKKIF--ELEHRVLRADGTPGWTLSRAVPILDSNGKIVEWFGAA 126

Query: 284 NSFGEAGIAIDV-SKEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           +   +   A +   +    ++Q    YE +  +    I +FDQ+    + N + + +W  
Sbjct: 127 SDITQRKSAEEALREAKEQSEQQKRLYETITSSTPDLIYVFDQDYRFTYANGALLSMWG- 185

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---- 397
                     +D + + L       E  + +     I  V  + +  +     P+     
Sbjct: 186 -------KSWDDAIGKGLLDNGY--EPWHAEMHHREIDQVKTTKQPIRGEVSFPHATLGR 236

Query: 398 QTLHVIVTS--NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           +    I T   N  G          ++T   + E   +          D     ++V   
Sbjct: 237 RIYDYIFTPVINEYGEVEAVAGTTRDITDIRNAEIAISESEARFRTMADSTDVMISVGNE 296

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            G I   N A+  +      +L        +        +  D   +     TS   E+K
Sbjct: 297 SGSIIYFNEAWARVTGRTTTQL--------LKDGWFDLIHAEDKEAVIKNFSTSLL-EKK 347

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
             Q    +  DS  +Y  +    A    +  +    + +   +TE  E     ++ KN+F
Sbjct: 348 PWQWEFRIP-DSQNKYRWLLSRGAPRFRSDGSFAGYISSTVDITEIKEN----EQRKNAF 402

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  VS+EL++PLT+ I +  + +   L   ++  S  +E  +     + +++N  L+L+ 
Sbjct: 403 ISMVSHELKTPLTSAISYIQVSQKKALTYDDTLTSGMLERAAKQLGKMTSMINGFLNLSR 462

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +++G + ++     ++ L+ E ++     +  +++  +      +    ADR+++ Q+ +
Sbjct: 463 LESGKIYIDRQRFDISLLMREAEEESLASISSHHLVFE---PATVSWVNADREKISQVIN 519

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            ++SNA+ +S  GST+ L     N     SV ++G  I ++    +F R+        R 
Sbjct: 520 NLISNAVKYSPAGSTIRLSCTTANDMMQVSVADDGMGISQEDLPRLFERYYRAKGNATRH 579

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G G+GL +    I  HGG +   S     +  +  IP
Sbjct: 580 IAGFGIGLYLCCEIIKGHGGEIWAESEPGKGSKFSFTIP 618


>gi|121997445|ref|YP_001002232.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121588850|gb|ABM61430.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 790

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 136/301 (45%), Gaps = 22/301 (7%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           W L A  +   DD      G + L S          +P        + +  ++RA++   
Sbjct: 171 WGLAATGVIGVDDRVNPATGPIILAS----------IPWTLGWTYGLAMAANLRAQQESE 220

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                  +A+  K+ F+ ++++E+R+P+  ++G T LL  +    L+++Q  ++  I  S
Sbjct: 221 RARAEAERANRAKSEFLANMNHEIRTPMNAVLGRTQLLLDT---DLDAQQLDHLGKIHNS 277

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S +LL ++NDILD++ +++G +++      L +++++V    +    E  + +       
Sbjct: 278 SKMLLGIINDILDISKIESGKLEIEPHRFDLREVIDQVDTLFSAAASEKGLDVTYDIQPD 337

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGSS 729
           L    + D  RL Q+ S +LSNA+ F+ +G TV L      +A  D     F V+++G  
Sbjct: 338 LPRMLIGDSLRLTQVLSNLLSNAIKFTPRGGTVELNLHEVGEADDDAAHVRFQVRDSGIG 397

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +  K +F  F        R   G GLGL I    +   GG + ++S     +     
Sbjct: 398 MDAEQLKRIFQPFEQADASTTRQYGGTGLGLEIGRRLVTNMGGRLEVTSRPGQGSRFFFT 457

Query: 788 I 788
           +
Sbjct: 458 L 458


>gi|331270145|ref|YP_004396637.1| sensory transduction histidine kinase [Clostridium botulinum
            BKT015925]
 gi|329126695|gb|AEB76640.1| sensory transduction histidine kinase [Clostridium botulinum
            BKT015925]
          Length = 1675

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 116/231 (50%), Gaps = 5/231 (2%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIG---FTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            + +E++  F  ++S+ELR+PL  I G      L+  S+      K  +Y+  +  +   L
Sbjct: 1411 RYEEMRTEFFANISHELRTPLNVIFGGYQMLKLMLESENLQSKPKIDKYMGTMKQNCYRL 1470

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            + L+N+++D+  +D+G  ++N   + + + +  +  S+A  +    I +   +  +    
Sbjct: 1471 VRLINNLIDITKIDSGFFEVNLINVDIINTIESITLSVAQYIESKGINLVFDTFVEEKII 1530

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
              D  ++ +I   +LSNA+ F++ G  + +    +  + + SVK++G  IP++    +F+
Sbjct: 1531 ACDVDKIERIILNLLSNAIKFTNPGGNIAVTMYEEKNNIVISVKDDGIGIPDEKQSIIFD 1590

Query: 741  RFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF+         R G G+GLS+V+S + LH G + + S     +    ++P
Sbjct: 1591 RFIQVDKSLSRNREGSGIGLSLVKSIVELHKGKIYLKSKLGEGSEFIIKLP 1641


>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1823

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 127/299 (42%), Gaps = 29/299 (9%)

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS-VRAERALTEKNEAL 562
            +   D  R+     +ELL D   +  I  L  A  + T V   +       AL +  +A 
Sbjct: 976  LQQCDVTRQWTTDEIELLEDVAAQVGIT-LAQAHLLETEVKRQEQLAEQNEALEQARQAA 1034

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              A+  K+ F+  +S+E+R+P+  +IG T LL       L  +Q  +VE I  S   LL 
Sbjct: 1035 EVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDM---DLTPEQRDFVETIRTSGDALLT 1091

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
            ++NDILD + +++G M L      L   + E    +A K  E  + +  + D  + S  +
Sbjct: 1092 IINDILDFSKIESGKMDLEQHPFELRTCIEESLDLLAPKASEKGLELAYLIDSSVPSKVL 1151

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------------------NGDFI 720
             D  RL QI   +L NA+ F+  G  V+   AR                        +  
Sbjct: 1152 GDVTRLRQILVNLLGNAVKFTEAGEIVVSVTARKISERHGEELYKLPLSNYQVPVPYEIQ 1211

Query: 721  FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +VK+ G  IP D    +F  F  V  +   Q  G GLGL+I +    + GG + + S 
Sbjct: 1212 IAVKDTGIGIPPDRMDRLFKAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVSK 1270


>gi|325571476|ref|ZP_08146976.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC
           12755]
 gi|325155952|gb|EGC68148.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC
           12755]
          Length = 613

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 153/387 (39%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 238 GQLAETFNQLGERIEETQEAMESERNRLDSVLSHMTDGVVATDRRGKVITINEMAMSLLN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                 + G  I  I      Y       +    ++    ++   L GT  +L    +++
Sbjct: 298 VTNEE-AIGQSILTILEIDEEYTLRKLLENPEDMLLERPSND---LTGTNLILR---IDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K ++ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SMIRRESGFISGLVAVMHDVTEQE-----------KNEQERREFVSNVSHELRTPLTSMR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L L+ +D+G  +L    I  N
Sbjct: 400 SYIEALSEGAWKD-PEIAPNFLKVTLDETDRMIRMINDLLSLSRMDSGNSQLQLEYINFN 458

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +++N V       +        I+     +      D  +++Q+   I++NA+ +S  G 
Sbjct: 459 EMVNFVLDRFDMMVTNESKKYLIRREFTKRELWVEVDTDKMIQVIDNIMNNAIKYSPDGG 518

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESF 764
            + +K    + + + S+ + G  IP+     +F+RF         Q+ G GLGL+I    
Sbjct: 519 IITVKLMETHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARARQQGGTGLGLAISREV 578

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  HGG +   S +   +T    +P +
Sbjct: 579 IKAHGGAIWAESRENRGSTFYIMLPYE 605


>gi|322419867|ref|YP_004199090.1| integral membrane sensor hybrid histidine kinase [Geobacter sp.
           M18]
 gi|320126254|gb|ADW13814.1| integral membrane sensor hybrid histidine kinase [Geobacter sp.
           M18]
          Length = 1364

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 130/256 (50%), Gaps = 3/256 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+        +  R  R L ++ + L +A  +K+ F+ ++S+ELR+PL +++  + +L  
Sbjct: 557 QSTELVQQSDELARRNRVLDQQKQLLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAV 616

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+ ++  Y+  I  +   LL+L+NDILDLA +++G   L +  +  + +  EV  
Sbjct: 617 QGAARLSVEERGYLGIIEKNGKHLLSLINDILDLAKIESGRQDLFFEAVAPDKVAAEVVD 676

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +A    E  I + + +   L S V D ++L Q+   ++ NA+ F+++G+ V L+ A+  
Sbjct: 677 GLAVLASEKGITLALSAPQALPSMVIDVKKLRQMLQNLVGNAVKFTAEGA-VTLRLAQLG 735

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
            + +F V++ G  I      S+F  F        R   G GLGL+IV+    L GG V++
Sbjct: 736 NELLFEVEDTGIGIAPQYLDSIFQEFRQADGSTSRSYEGTGLGLAIVKKSARLLGGEVAV 795

Query: 775 SSSDEGVTTINCRIPS 790
            S     +  + R+P 
Sbjct: 796 VSELGKGSVFSLRLPL 811


>gi|237717311|ref|ZP_04547792.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|229443294|gb|EEO49085.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
          Length = 403

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 164/374 (43%), Gaps = 24/374 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           ++     K     +D L + + VF  D  I         L  +       G +  NI  T
Sbjct: 41  SQERFRDKYSTRILDALPDMLTVFDHDANII-------ELASSPATNHVEGINASNITTT 93

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTFV 543
             +     + ++     +       +S     +L+ D VL   E  I PL N   +    
Sbjct: 94  NVKDILPEEAYESVRKNMDKVILTGESSTARHDLMLDGVLHHYENRIFPLDNKYLLCMCR 153

Query: 544 NVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +++    AE+        L        ++D +K++F+ ++S+E+R+PL  I+GF+ L+  
Sbjct: 154 DISQQWEAEQTNAQQQKELKAARVKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI-- 211

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +   +++QY E I  +S +LLNL NDILDL++++A  +K N   I L D+  ++KQ
Sbjct: 212 -TFATSTEEKNQYAEIIERNSEMLLNLFNDILDLSSLEADSLKFNIRPIKLTDICLQLKQ 270

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               K  +N +++ +           D  R++QI S +LSNA  F+ KG  +        
Sbjct: 271 QFCHK-TQNGVKLILDDVDADMYASGDWNRIIQIISNLLSNATKFTPKGE-IHFGYREKE 328

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F VK++G  IP +   ++F RF       Q  G GLGL++    +   GG + + S
Sbjct: 329 DFVEFYVKDSGIGIPAERVATIFRRFGKVNDFVQ--GTGLGLTLCRMLVEKMGGRIWLRS 386

Query: 777 SDEGVTTINCRIPS 790
            +   +     +P 
Sbjct: 387 QEGQGSRFYFTLPL 400


>gi|269839880|ref|YP_003324573.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791610|gb|ACZ43750.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 593

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 146/367 (39%), Gaps = 26/367 (7%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            N   +     + ++++ + +    G ++  N A   L    E  +  G  +  +     
Sbjct: 244 INRERERMSAVLSYMADSLLITNARGEVQAMNRAAEQLLDVREQDVR-GRSVMAVIRD-- 300

Query: 489 RYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVN 544
                    +L   +  + + +    L   LEL SD    +++    P+P      + V 
Sbjct: 301 --------HELAGLVRRALEMQGPVRLPRLLELGSDGNRRLIDALASPIPGENGTGSQV- 351

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                     L      LR+A+ I+  FV +VS+ELR+P+  +    + L+   L     
Sbjct: 352 --------LLLLRDVTELRRAETIRQEFVANVSHELRTPVAALKSLVETLEEGALED-EE 402

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
               ++  +      L  L+ ++L+L+ +++G ++L    + L +++    + +  +   
Sbjct: 403 VARDFLARMHVEVDKLAQLIEELLELSRIESGKVELRIHPVNLVEVVRAGAERLRPQAER 462

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + ++V  +      +AD +R+ Q+   ++ NA+ F+  G  + ++    + +   +V+
Sbjct: 463 QGVDLEVTVEQPEILALADPERIQQVVINLVHNAIKFTPPGGRITVRVYSLDREVAVTVQ 522

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTT 783
           + G  I  ++   +F RF          G GLGL+I +  +  H G +   S        
Sbjct: 523 DTGVGIEPELLDRLFERFFKVDRARSAGGTGLGLAIAKHLVLAHRGRIWAESEGMGKGAR 582

Query: 784 INCRIPS 790
               +P+
Sbjct: 583 FTFTLPA 589


>gi|126651922|ref|ZP_01724114.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126591191|gb|EAZ85300.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 915

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 149/325 (45%), Gaps = 26/325 (8%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I    +     ++   + +  + +  +E +     L ++++ + E         +T   
Sbjct: 427 EIVRLLNESRAMTEELQVQSEELQTQSEELQMQTEELTMINEQLEE---------RTKEA 477

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +  +A++ L E  E L      K+ F+ ++S+ELR+PL +I+  +++L  +    
Sbjct: 478 ETKSRELEKAKQELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENNQDH 537

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +++++ + I +S   LL L+NDILDL+ V+AG + + ++ + ++++  +++ + A  
Sbjct: 538 LTDEEAEFAKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNVSEVPVQIEHTFAPV 597

Query: 662 MHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------ 714
             + NI   +  +D  +  F  D +R  QI   +LSNA  F+  GS V L   +      
Sbjct: 598 AMKKNIDFHISKADNVVDVFYTDEKRFQQIVKNLLSNAFKFTEHGS-VTLAINQLAQRQL 656

Query: 715 -------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
                         +V + G  IP+D  + +F  F         +  G GLGLSI + F 
Sbjct: 657 TSNMQDISTDWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFA 716

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L GG +++ S +   +     IPS
Sbjct: 717 KLLGGWITLQSEEGQGSIFTLTIPS 741


>gi|147676477|ref|YP_001210692.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI]
 gi|146272574|dbj|BAF58323.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 2071

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 12/251 (4%)

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +       L +  EA   A+  K  F+  +S+E+R+ L  +IG  +LL  +    LN +Q
Sbjct: 1532 ELQETNELLKQAKEAADAANRAKGKFLAVMSHEIRTTLNGLIGMAELLLDT---PLNGEQ 1588

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +YV  +   +  LL++VND+LD + ++ G + L   +     L+ +    +     + +
Sbjct: 1589 QEYVSAVRECADSLLSVVNDLLDFSRIEEGRLVLETVSFNPASLVEKSVALVEPGARQKS 1648

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720
            + +K      +  +   D  RL Q+   +L NA+ F+ +G  + L A  +  +       
Sbjct: 1649 LLLKYHIAPDVPGTLQGDPIRLRQVLLNLLGNAVKFTERGE-ISLSAFVEGREPDSLTVR 1707

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            F V++ G  IPE+    +F  F     +  G+  G GLGLSI +  + L GG +   S +
Sbjct: 1708 FEVQDTGIGIPEEARSMLFRPFTQAGPSSAGRYGGAGLGLSICKRLVELMGGRIGFESEE 1767

Query: 779  EGVTTINCRIP 789
               +T    +P
Sbjct: 1768 GRGSTFWFSVP 1778


>gi|30265483|ref|NP_847860.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47531051|ref|YP_022400.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188302|ref|YP_031555.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|65317446|ref|ZP_00390405.1| COG5002: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165872528|ref|ZP_02217161.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167641431|ref|ZP_02399681.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170689184|ref|ZP_02880381.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|170708650|ref|ZP_02899089.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|177651823|ref|ZP_02934406.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227818234|ref|YP_002818243.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229602903|ref|YP_002869674.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
 gi|254687094|ref|ZP_05150952.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735140|ref|ZP_05192850.1| sensory box histidine kinase YycG [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742151|ref|ZP_05199838.1| sensory box histidine kinase YycG [Bacillus anthracis str. Kruger
           B]
 gi|254755939|ref|ZP_05207971.1| sensory box histidine kinase YycG [Bacillus anthracis str. Vollum]
 gi|30260161|gb|AAP29346.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47506199|gb|AAT34875.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182229|gb|AAT57605.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|164711751|gb|EDR17295.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167510606|gb|EDR86002.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170126432|gb|EDS95320.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|170666827|gb|EDT17593.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|172082527|gb|EDT67591.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227004751|gb|ACP14494.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229267311|gb|ACQ48948.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
          Length = 613

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 146/394 (37%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++  I   +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVIQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|323493551|ref|ZP_08098673.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
 gi|323312374|gb|EGA65516.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
          Length = 878

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 7/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                ER L    E    A + K+ F+ ++S+E+R+PL  IIG  ++L  S    L+S Q
Sbjct: 366 QQKEYERNLVSAKENAEAASQAKSVFLANMSHEIRTPLNGIIGMAEILSDSH---LSSSQ 422

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  I  SS  LL L+NDILDL+ +++G + L+  T+ L +++ +    + +K  + +
Sbjct: 423 KEILSDIDTSSHALLVLINDILDLSKIESGNLILSVHTVCLREMVFDTVNMLTSKALKQD 482

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +KV     L  +   D  R  Q+   +LSNA+ F+ +GS V ++   +    +  V +
Sbjct: 483 VELKVDFADNLPDNIEIDDFRFKQVLMNLLSNAVKFTQQGS-VSVELLIEGQQLVCHVAD 541

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I  +    +F  F        RR  G GLGL+I    I +  G +S+SS+    + 
Sbjct: 542 SGVGISPEKLTEIFKPFTQEDGSITRRFGGTGLGLAICNQLIEIMQGTISVSSTPGVGSR 601

Query: 784 INCRIPSK 791
               +P +
Sbjct: 602 FTVSVPLE 609


>gi|167623839|ref|YP_001674133.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167353861|gb|ABZ76474.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 818

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 195/437 (44%), Gaps = 31/437 (7%)

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN------LTVQVDLETKYNTLV 433
            V +  + + DT+ L   +   +  T   +G       N      LT Q+        ++
Sbjct: 121 RVLEQLDDYIDTFSLLINEIYSINGTRAEQGLLARFERNSNELQLLTNQLKDTELLELII 180

Query: 434 KVQGETID--HLSEGVAVFGPDGRIKLSNPAF----RSLWKTEENRLSPGTHIRNIAATC 487
             Q    D     +   +     + K+         +S    ++  L+       + A+ 
Sbjct: 181 ANQLTVFDFFKSFDSALLTRVTHQFKIIEQHIKDKPQSTLPLQQAFLAFEHAFFQLQASM 240

Query: 488 SRY-YNESDGWD-LFAAIITSFDDERKSLQGTLEL-----LSDSVLEYSIIPLPNAQTML 540
            R  Y+ES G+       + S +   ++L  T+ L     +S  V+  SI+ +     ++
Sbjct: 241 KRRGYSESLGYHGTLRQNVHSVERSLETLFNTIPLKVDKSVSGLVITQSIVEILLVLLIV 300

Query: 541 T--FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
              +       R E+ L    E   +A+  K+SF+ ++S+E+R+PL  IIG T++L  SK
Sbjct: 301 GILYYIFYSITRMEQGLIFAREKEEQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSK 360

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L ++   Q  Y+  I++SS  LL L+NDILDL+ +++G +++   T  + +++ +    I
Sbjct: 361 LTAI---QKDYLATINSSSQTLLMLINDILDLSKIESGHLEICPHTCNIKEVIYDTVALI 417

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR 714
           A K  + +I +++  D  +  +V AD Q+L Q+   + SNA+ F+  GS    + L+   
Sbjct: 418 APKAQQRSIEMRITIDQNIPCYVRADEQKLRQVLMNLASNAVKFTHSGSVSFKLQLEVET 477

Query: 715 DNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGH 771
            +    +FSVK+ G  I E+    VF  F            G GLGLSI    + + GG 
Sbjct: 478 TDTICILFSVKDTGIGIDENKHMQVFEEFQQEERNTSVEYGGTGLGLSISTKLVRMMGGE 537

Query: 772 VSISSSDEGVTTINCRI 788
           ++I+SS    +     +
Sbjct: 538 IAINSSKGLGSEFYFYL 554


>gi|118480493|ref|YP_897644.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196041968|ref|ZP_03109255.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99]
 gi|196045450|ref|ZP_03112681.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108]
 gi|225867446|ref|YP_002752824.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102]
 gi|300118834|ref|ZP_07056554.1| sensory box histidine kinase YycG [Bacillus cereus SJ1]
 gi|301056939|ref|YP_003795150.1| sensory box histidine kinase YycG [Bacillus anthracis CI]
 gi|118419718|gb|ABK88137.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196023657|gb|EDX62333.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108]
 gi|196027223|gb|EDX65843.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99]
 gi|225789643|gb|ACO29860.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102]
 gi|298723802|gb|EFI64524.1| sensory box histidine kinase YycG [Bacillus cereus SJ1]
 gi|300379108|gb|ADK08012.1| sensory box histidine kinase YycG [Bacillus cereus biovar anthracis
           str. CI]
          Length = 613

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 235 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 294

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 295 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 331

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 332 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 391

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 392 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 450

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 451 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 509

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 510 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 569

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 570 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040]
          Length = 770

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 124/252 (49%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E+AL    E    A   K+ F+ ++S+E+R+P+  +IG  ++L+ ++   L   Q
Sbjct: 226 ERDEREKALEHAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETE---LTPDQ 282

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y E I  S   LL+++NDIL  + ++AG ++L  +T  L  ++ +V   +A K  E  
Sbjct: 283 ELYTETIVKSGNALLSIINDILSFSKIEAGKLELTQATFNLRTVIEDVIMLLAPKAAEKW 342

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIFS 722
           +++ +  D  L  F   D  R+ QI + ++ NA+ F+S+GS  + +         D   S
Sbjct: 343 VQLTLRYDPDLAEFYDGDAGRIRQIVTNVVGNAVKFTSRGSVHIDVTGVARGQLMDLRIS 402

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP +    +F+ F  V  A      G GLGL+I    + +  G + ++SS+  
Sbjct: 403 VVDTGIGIPAEKLDRIFHAFEQVDGAATRNFEGTGLGLAISTRLLQMMKGRIHVTSSEGK 462

Query: 781 VTTIN--CRIPS 790
            +       +P+
Sbjct: 463 GSVFTIDISLPT 474


>gi|229142214|ref|ZP_04270738.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
 gi|229199594|ref|ZP_04326255.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228583999|gb|EEK42156.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228641232|gb|EEK97539.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
          Length = 588

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 306

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 307 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 366

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 367 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 426 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 484

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 485 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|157373280|ref|YP_001471880.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157315654|gb|ABV34752.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1064

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 135/294 (45%), Gaps = 22/294 (7%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTF--------VNVTDSVRAERALTEKNEALRKA 565
           L  T++ L+D   E  ++       +            N+     AE+ L    +    A
Sbjct: 356 LSSTMKQLADGDTEVDVVYRDRQDEVGNMAQAVEVFKTNMIARNAAEQELVMAKDNAEAA 415

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K SF+  +S+E+R+P+  IIG  DLL TS   SLN  Q      I  SS  LLN++N
Sbjct: 416 SKAKASFLATMSHEIRTPMNGIIGMIDLLLTS---SLNRDQRSMTNTIRDSSFSLLNIIN 472

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG ++L      +++LL  V  +I     E  + +++ +D  +      D 
Sbjct: 473 DILDFSKIEAGKLELESLNFSISELLESVIDTITPNADEKRVTLELYTDPNIPHHIQGDP 532

Query: 685 QRLLQIFSKILSNAMDFS----SKGST-VILKAARDNGDFIF---SVKNNGSSIPEDMCK 736
            R+ Q+   ++ NA+ FS    S+G   + LK    +   +F    +++NG  I     +
Sbjct: 533 VRIRQVLFNLVGNAVKFSAVQDSRGEVRITLKKKELSNQLVFLTIEIQDNGIGIEAKQLE 592

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F  F        R   G GLGL+I ++ +NL GG + +SS+    +     +
Sbjct: 593 RLFQPFTQAESSTTRQFGGTGLGLAICQNLVNLMGGKIDVSSTVGKGSIFKVNL 646


>gi|330967661|gb|EGH67921.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 1170

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 5/334 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + E S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLAEQSQA--LADQRDALDRNNEELNIAQGELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPSENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEV 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +FSV+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LSI      L GG +S++S+    +     +P +
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQ 719


>gi|170751185|ref|YP_001757445.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657707|gb|ACB26762.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 910

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 113/650 (17%), Positives = 206/650 (31%), Gaps = 71/650 (10%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
             +           + + D+   L+   D AG + +A+           I+   A G   
Sbjct: 10  PARPGAPGPETEALRQIVDAAAGLILRLDGAGRVTFASA------GGRSILGAGAEGLVG 63

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA------IDV 295
              ++ +      + A       + + L         +  VL     AG A         
Sbjct: 64  HPLRDALHPEDAGALADAAGAGRSDTALVRMRGDPGWVATVLVVRAIAGTADRVVTVRAA 123

Query: 296 SKEITVNDQLT----HTYEILHNLTVAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNP 350
           S+       L     H   ++  L   + +   +     + N++F           A   
Sbjct: 124 SEPEQTYANLRTSRDHYRALVDTLPQLVWMERADTGETIYVNQAFEAYCGPIPTTRAART 183

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
                 +  R A    +        E    V  +    +  WH    + LH+    +   
Sbjct: 184 DRFHPEDAGRIAGAYAKARVQGRSSEIQGRV--ADRAGRFRWHQFVVRPLHM---GSDLI 238

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSL--W 467
           G +    ++   V          ++     +    G+       R + LS  + R L   
Sbjct: 239 GWLGSALDIDEIVSAREALVEKGELLRLAQEAAGAGLFDLDLASRDLILSPDSARRLGFS 298

Query: 468 KTEENRLSPGTHIRNIAATCS---------------------RYYNESDGWDLFAAIITS 506
                 ++    +R +                          R  +   G     AI   
Sbjct: 299 GDRPAVVNVAEGMRRVVPADRAATLRAVRAAAAERRTFDVAFRVPDAGGGCRWIQAIGRP 358

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
             D      G    +    L+  I    + +  L                       +AD
Sbjct: 359 HRDR----DGVAARIVGLTLD--ITARKDGERALIAAKAAAEA--------ARAEAERAD 404

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F+  +S+E+R+PL  +IGF  LL  S  G L+    +Y E  + +   L  +V+D
Sbjct: 405 AAKTEFLSAMSHEIRTPLNAVIGFAGLLAES--GRLDGDLRRYAELAATAGANLRTVVDD 462

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
           ILD ++V+AG + L+   + L  L++     +        + +    D  +    V D  
Sbjct: 463 ILDFSSVEAGAINLDPEPVALRPLVDACLGIVEAPARAKGLDLVAQIDAAVPDRLVCDPG 522

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI   +L+NA+ F+ +G  V +    +          FSV + G  I  D  + +F 
Sbjct: 523 RLRQILLNLLNNAVKFTPRG-RVTVDLFHEEAGPRGDTIRFSVTDTGIGIAPDRQERLFQ 581

Query: 741 RFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           RF            G GLGL+I    + L GG + + S++   +T    +
Sbjct: 582 RFSQADSSIRRAYGGTGLGLAISRRLVELMGGTMGLVSAEGRGSTFWFAL 631



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 90/306 (29%), Gaps = 36/306 (11%)

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIY------SELAETTLKCKKLSNHISVFKVLFDS 201
            +   +++ G        L + ++ G           +E       L      ++ L D+
Sbjct: 87  SDTALVRMRGDPGWVATVLVVRAIAGTADRVVTVRAASEPEQTYANLRTSRDHYRALVDT 146

Query: 202 LDFLVWHRDQA-GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           L  LVW      G+ ++ N +++                        I      +    +
Sbjct: 147 LPQLVWMERADTGETIYVNQAFEAYCGPIPTTRAARTDRFHPEDAGRIAGAYAKARVQGR 206

Query: 261 NFCETVSTLEHGNN-KSYKIVRVLNS-----FGEAGIAIDVSKEITVNDQLTHTYEILH- 313
           +        +     + ++ V           G  G A+D+ + ++  + L    E+L  
Sbjct: 207 SSEIQGRVADRAGRFRWHQFVVRPLHMGSDLIGWLGSALDIDEIVSAREALVEKGELLRL 266

Query: 314 -NLTVAIAIFD---QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
                   +FD    +R L     S   L      F    P+   + E +R    +P   
Sbjct: 267 AQEAAGAGLFDLDLASRDLILSPDSARRL-----GFSGDRPAVVNVAEGMR--RVVP--A 317

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNG----QTLHVIVTSNPRG-----GTIWMFENLT 420
           +       + +      T    + +P+     + +  I   +          + +  ++T
Sbjct: 318 DRAATLRAVRAAAAERRTFDVAFRVPDAGGGCRWIQAIGRPHRDRDGVAARIVGLTLDIT 377

Query: 421 VQVDLE 426
            + D E
Sbjct: 378 ARKDGE 383


>gi|219848609|ref|YP_002463042.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219542868|gb|ACL24606.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 910

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 141/316 (44%), Gaps = 7/316 (2%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           I  I A   R        DL   +    + E   +      +  S L      +   QT 
Sbjct: 309 IFRILAELRRGAERVGSGDLSQPLPVPQEREVAQVASAFNTMM-SQLRARNAEIA-RQTE 366

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                V +  R E+ L    +A   A   K++F+  +S+ELR+PLT IIG++ LL+    
Sbjct: 367 SLKAEVQERRRIEQELIRARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLLEQLVD 426

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             +    +  V  I A+   LL L+NDILD++ ++AG M ++     + DL+ +   ++ 
Sbjct: 427 KGIYETVAHDVRRIRAAGNHLLTLINDILDISKIEAGRMTISVEYADVADLVRDAVNTVL 486

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD 718
            +M +N+ R+++     +G   +D  ++ Q    +LSNA  F+  G+ T+ +    D G 
Sbjct: 487 PQMEKNHNRLQLHCPPDIGMLNSDATKVRQALINLLSNAAKFTENGTVTLTVTRYEDEGR 546

Query: 719 F--IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
               F+V + G  IP D    +F  F         +  G GLGL++ +    L GG +++
Sbjct: 547 LWFRFTVADTGIGIPPDKLDKLFKAFSQIDDSPTRKYGGTGLGLALSQRLCELVGGRITV 606

Query: 775 SSSDEGVTTINCRIPS 790
            S+    +     +P+
Sbjct: 607 QSTVGVGSVFTIEVPA 622


>gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1130

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 120/240 (50%), Gaps = 7/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN+ L+  D++K+ F+ + S+ELR+PL  IIG  + +     G+++  Q++ +  I 
Sbjct: 439 LERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIAESMMDGATGNISELQNKNLSMIV 498

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLVNDILD + +    +KL  S++ + ++   V       + E ++++     
Sbjct: 499 VSGHRLANLVNDILDFSKLRHHSIKLKMSSVGMREVTEVVLTFSRIILKEKDVQLINAIS 558

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSI 730
             L    AD  R+ QI   ++ NA+ F+  G  + + A     ++N     +V + G  I
Sbjct: 559 SDLPPVEADENRIQQIMHNLVGNAIKFTEVG-VITISAELIDLKNNPKMAITVSDTGIGI 617

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PED  +++F  F       +RR  G GLGL I +  + LHGG +S+ S+    +     +
Sbjct: 618 PEDKHEAIFASFEQGDGSTERRYGGTGLGLPITKQLVELHGGTISVKSNPGVGSEFTFTL 677


>gi|229159025|ref|ZP_04287081.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
 gi|228624444|gb|EEK81215.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
          Length = 588

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 306

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 307 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 366

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 367 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 426 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 484

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 485 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|254525934|ref|ZP_05137986.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Prochlorococcus marinus str. MIT 9202]
 gi|221537358|gb|EEE39811.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Prochlorococcus marinus str. MIT 9202]
          Length = 688

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 157/390 (40%), Gaps = 47/390 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  + L++ E   L     +  I   
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKNFLNEIPEI 347

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            S   +     +         DD R SL     TL ++  SVL+ + + L          
Sbjct: 348 LSNDLHT--NVESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAV----- 400

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  +N F+ +VS+ELR+PL NI  + + L   K    +
Sbjct: 401 -TIQDLTREVEL----------NAAQNRFISNVSHELRTPLFNIKSYVETLHDLKDQLSD 449

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G + +    + +   + +  ++      
Sbjct: 450 EEQIEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLDQMDIKPAIEQTLRNYRLNAT 508

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           E N+ +    +  +   + +   LLQ+F  +L N + FS K S++I++A           
Sbjct: 509 EKNVTLAHDIEETIPLILGNFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFP 568

Query: 718 ------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGL 758
                                  + + GS I +   + +F+RF    +     +G GLGL
Sbjct: 569 PSIKNDGAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSVHTEQGTGLGL 628

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           SIV   I  HGG + ++S     TT    +
Sbjct: 629 SIVRGIIEKHGGEIRMASELGVGTTFWFDL 658



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D    +   N +   L+  +  FL      +
Sbjct: 283 DEANIEELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKNFLN 342

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           E+ E L +        +  T  E+I +  K  +  + +   P  +TL +++ S       
Sbjct: 343 EIPEILSN--------DLHTNVESILNREKEKDDLRFSLGEP-ARTLRIVLQSVLDTNKV 393

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    N  +
Sbjct: 394 ELKGIAVTIQDLTREVELNAAQNRFI 419


>gi|227532779|ref|ZP_03962828.1| histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189613|gb|EEI69680.1| histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 636

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 150/406 (36%), Gaps = 45/406 (11%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   + +   + +    + H+++GV      G + + N    +   
Sbjct: 240 GQLAVAVNNLSVRVEEAQEASEAERRRLDSVLAHMTDGVIATDRRGNVIIINQTALNFLN 299

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T    +  G  I  +      Y       DL         D  + L   L L     +++
Sbjct: 300 TRNEDV-IGVSILKLLNIAKDY----TLRDLLEHQTELLLDFSEQLDHELILR----VDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 351 SLIQRETGFISGLVAVLHDVTEQQ-----------KIDRDRKEFVSNVSHELRTPLTSVR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++      +  ++ ++ND+L L+ +D+G  K N  T+ LN
Sbjct: 400 SYIEALSDGAWKD-PKLAPRFLNVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLN 458

Query: 649 DLLNEVKQSI---------------------ATKMHENNIRIKVISDGKLGSFVADRQRL 687
           +  N V                              +    IK     +      D  + 
Sbjct: 459 EFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQKKRYSIKREITDQDLWVEIDTDKF 518

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
           +Q+   I++NA+ +S  G T+  +  + +   I S+ + G  IP      +F+RF     
Sbjct: 519 MQVIDNIMNNAIKYSPDGGTITARLFQTHDHVILSISDQGLGIPRQDLSKIFDRFYRVDK 578

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++ G GLGL+I +  +    G + + S +   +T    +P +
Sbjct: 579 ARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGRGSTFYISLPYE 624


>gi|191639754|ref|YP_001988920.1| Sensor protein [Lactobacillus casei BL23]
 gi|190714056|emb|CAQ68062.1| Sensor protein [Lactobacillus casei BL23]
          Length = 636

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 151/406 (37%), Gaps = 45/406 (11%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   + +   + +    + H+++GV      G + + N    +   
Sbjct: 240 GQLAVAVNNLSVRVEEAQEASEAERRRLDSVLAHMTDGVIATDRRGNVIIINQTALNFLN 299

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T+   +  G  I  +      Y       DL         D  + L   L L     +++
Sbjct: 300 TKNEDV-IGVSILKLLNIAKDY----TLRDLLEHQTELLLDFSEQLDHELILR----VDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 351 SLIQRETGFISGLVAVLHDVTEQQ-----------KIDRDRKEFVSNVSHELRTPLTSVR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++      +  ++ ++ND+L L+ +D+G  K N  T+ LN
Sbjct: 400 SYIEALSDGAWKD-PKLAPRFLNVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLN 458

Query: 649 DLLNEVKQSI---------------------ATKMHENNIRIKVISDGKLGSFVADRQRL 687
           +  N V                              +    IK     +      D  + 
Sbjct: 459 EFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQKKRYSIKREITDQDLWVEIDTDKF 518

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
           +Q+   I++NA+ +S  G T+  +  + +   I S+ + G  IP      +F+RF     
Sbjct: 519 MQVIDNIMNNAIKYSPDGGTITARLFQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDK 578

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++ G GLGL+I +  +    G + + S +   +T    +P +
Sbjct: 579 VRSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGRGSTFYISLPYE 624


>gi|182413985|ref|YP_001819051.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
            PB90-1]
 gi|177841199|gb|ACB75451.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
            PB90-1]
          Length = 1204

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 120/248 (48%), Gaps = 16/248 (6%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R L       ++A + KN F+ ++S+E+R+P+  +IG ++LL  + LG    +Q +Y + 
Sbjct: 805  RELEAAIAKAQQAAKAKNQFLANMSHEIRTPMNGVIGMSNLLVDTPLG---PEQQEYAQA 861

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I  S+  LL ++NDILD++ ++AG ++L  +   L+ L+ +    +        +R+K  
Sbjct: 862  IRHSAEALLAIINDILDVSKLEAGKLQLVPTEFRLDQLVEDAVSLLRPSATAKGLRLKAE 921

Query: 673  SDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------DFIFS 722
               +L  + + D  R+ Q+   ++ NA+ F+  G  V ++ A + G              
Sbjct: 922  LSPELPPTLLGDANRVRQVLLNLIGNAVKFTEHGG-VFVRVAPEPGATAHDSGPVSVRIE 980

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  +P +  + +F  F         +  G GLGL+I    + L GG + + S + G
Sbjct: 981  VADTGIGVPPEAAERLFQPFTQADESMTRRYGGTGLGLAISRQLVELMGGQIGVRSPETG 1040

Query: 781  VTTINCRI 788
             +   C I
Sbjct: 1041 GSVFWCVI 1048


>gi|17230389|ref|NP_486937.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131991|dbj|BAB74596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 646

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 99/518 (19%), Positives = 199/518 (38%), Gaps = 41/518 (7%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           E  +++       I       + ++D   +   + N    +L            +  +L 
Sbjct: 139 EEQLHNSQKFIKRIAETTPGILYVYDLVEKRNVYLNGKVGDLLGYTPQ------TIQDLG 192

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHV-----IVTSNPR 409
           +        PE L         F   K  +   H+   H  NG          + T N  
Sbjct: 193 KEFLIKLMHPEDLVQLPQVFQQFDSAKDGDIIEHEYRMHHANGGWCWFFSRNSVFTRNAD 252

Query: 410 GG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRS 465
           G     +    ++T +  +E +  +  +        ++  +  +    G +  +    R 
Sbjct: 253 GSPRQIVGTAFDITARKQVEEELRSSNERFRLAAAAINALIYEWDVKKGTVTRTEGLTRI 312

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L  + E         +       + +      +L        +  R + +  +   +   
Sbjct: 313 LGYSVEEATPTIEWWQEQIHPEDQDFLVQQFQNL------PVNQNRYTFEYRIRHKNKQY 366

Query: 526 LEY----SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR----------KADEIKNS 571
           L       I    N Q +    + TD    +RA TE+N+ L+           A+  K+ 
Sbjct: 367 LYVLDQGVITRDENGQPVRVVGSTTDISDRKRAETERNQLLQLEKLARAEAEAANHTKDE 426

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           FV  VS++LRSPL  I+G++ LL+T +L       ++ +E I  ++     L+ D+LD++
Sbjct: 427 FVAMVSHDLRSPLNAILGWSQLLRTRQLDETT--FTRALETIERNAQSQSKLLEDLLDMS 484

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            V  G ++L +  + L  ++    ++        NI +K + D  +     D  RLLQ+ 
Sbjct: 485 RVLRGKLQLEFCQVDLAAIIGVAIETAYPSAKAKNIHLKSVIDESIPLIPGDINRLLQVL 544

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             +LSNA+ F+     + ++ +  + +   +V + G  I  +    VF+R+     + ++
Sbjct: 545 GNLLSNAIKFTPPEGQITVQLSYTDSEAHITVTDTGIGIKSEFLPYVFDRYRQADCQHKQ 604

Query: 752 RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRI 788
            G+GLGL+I    I LHGG + ++S  +   TT   ++
Sbjct: 605 HGLGLGLAIARYLIELHGGAIHVTSPGEGQGTTFTIKL 642


>gi|327485718|gb|AEA80124.1| Sensor protein torS [Vibrio cholerae LMA3894-4]
          Length = 984

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 125/261 (47%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L + Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTATQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRV 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + + S     +     +P 
Sbjct: 671 GELQLDSQLGQGSCFWFTLPL 691


>gi|323136816|ref|ZP_08071897.1| histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322398133|gb|EFY00654.1| histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 883

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 112/590 (18%), Positives = 225/590 (38%), Gaps = 47/590 (7%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
           +      +    A     +         +  +++ +  F E    L  G+          
Sbjct: 315 RADNVVPLRPSAATPRIEEPRDPAADATL--TASEQSAFDEIARALLAGDASGDD----- 367

Query: 284 NSFGEAGIAIDVSKEITVNDQL--------THTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            + G    A++ ++      +             E+L  L V + I  +     F NR+ 
Sbjct: 368 -AAGTPADALEETESAPAEAEPAAAPRARDRTVEEVLDRLPVGVLI-ARGADTLFVNRTL 425

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSA-NKLPEQLNWKTWKENIFS---VYKSSETHKDT 391
           ++         A   + D      R    + P + N       + S        + H  T
Sbjct: 426 LDYLGY-----ADRAAFDTYGGLARMFFGRGPGEPNGHAGPAAVQSSDGERLDVDVHLQT 480

Query: 392 --WHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             W       L +    +    P    + +   +  ++    +      +    ++    
Sbjct: 481 LEWEGEAATLLTLRRNHHRPRGPDESALALAREMEARL---ARVRANNNLLRAVLESDGS 537

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            +A+   DG I+ +   F +L+   E     G  + ++ A        +      A +I+
Sbjct: 538 AIAIVCDDGLIESATAGFAALFGA-ETGAFDGLPLASLFA--------AQEGRTIAGLIS 588

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLTFVNVTDSVRAERALTEKNEALRK 564
               E+              +E S+  LP  A  +   +    + R    L     A   
Sbjct: 589 RVKSEQNETARLTARARGVPIEASLQRLPVGAGKICVRLKEPAADRRNDELEAARVAAEH 648

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNL 623
           A   K+ F+  VS+E+R+PL  IIGF +++   + G + + +  +Y++ + AS T +L+L
Sbjct: 649 ASAAKSDFLARVSHEIRTPLNAIIGFAEVMMEERFGPIGSERYKEYLKDVHASGTHVLSL 708

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VND+LDL+ ++AG ++L++  +  N +++E    + T+ ++  + +++    +L    AD
Sbjct: 709 VNDLLDLSKIEAGKLELSFERVDANAIISECVSIMQTQANQGRVVVRLALAQRLPPIRAD 768

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            + L QI   +LSNA+ F+  G  VI+  A  + G  +  VK+ G  + +D  ++    F
Sbjct: 769 ERSLKQILLNLLSNAVKFNEPGGQVIVSTALTEAGYVVIRVKDTGVGMSDDEVETALEPF 828

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              A   + RG GLGL + ++ I  +    +I S     T I    P  +
Sbjct: 829 KQIATSRKVRGTGLGLPLTKALIEANHASFTIKSRKNEGTLIEVAFPPPQ 878


>gi|218264827|ref|ZP_03478515.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221769|gb|EEC94419.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii
           DSM 18315]
          Length = 794

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 132/238 (55%), Gaps = 7/238 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  +   ++D +K++F+ ++S+E+R+PL  I+GF++LL    +     ++ +Y+ 
Sbjct: 409 EIELRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLL---TIAENEEERDEYIN 465

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            IS+++ +LL L+NDILD+A ++AG ++   S I +N LL++++QS   K  E  +++  
Sbjct: 466 IISSNNELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPE-GVQVSF 524

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        ++D+ RL Q+ +  ++NA+ F+ +GS +       +   +F VK+ G  I 
Sbjct: 525 VEKLPYCIIMSDKNRLAQVMTNFINNAIKFTKEGS-IRFGYEHKDDKLLFYVKDTGCGIE 583

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    VFNRFV      Q  G GLGL+I +  I   GG + + S     +T    +P
Sbjct: 584 PEKKDLVFNRFVKLNSFAQ--GTGLGLAICQMIIKKLGGEIGVESELGTGSTFWFTLP 639


>gi|109898566|ref|YP_661821.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700847|gb|ABG40767.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1143

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 98/513 (19%), Positives = 197/513 (38%), Gaps = 41/513 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                        ++     +  FD N  +   N +F +L       +       ++   
Sbjct: 299 EKARINEARLRATINTSVDGVLGFDSNGIVDSANDAFCQLVGCRSDDIIGQ----DVRVL 354

Query: 359 LRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI-----VTSNPRGGT 412
           +R  N     Q      ++N  ++ +  +     +   +G  + +      V  N     
Sbjct: 355 IRKENINEFNQYLIDRTQDNGHALGRGRDALIKHF---DGSLIPIRLAIGHVRLNKESHF 411

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-----------VFGPDGRIKLS-N 460
           +    +L  ++++E             I ++  G+A           VF  D    ++  
Sbjct: 412 VAFMSDLRYRIEMERALREREAQFRSLISNIP-GIAYRCKNMENWPMVFISDAVESITGY 470

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           PA   +    +       H  +IA    +     +    +   I +   + + L G    
Sbjct: 471 PAEDYISPDPKRHFYEHVHPDDIADITQKVLPHGEFQLEYR--IYNAKGDIRWLLGYGTH 528

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + D   E S     +   M    ++T+    E++L    +   +A   + +F+ ++S+E+
Sbjct: 529 VDD---EESGQRWLDGFIM----DITERKEMEQSLLLAKDKAEQAASARAAFLANMSHEI 581

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  IIGF+D+L      ++   Q +++  I+ S+  LL+L+NDILD A +D G   L
Sbjct: 582 RTPMNAIIGFSDILLD---DAIEPDQKKHLTTINKSAKSLLHLLNDILDSAKLDKGKFDL 638

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
                 L + ++ V  ++       N+ + V  D  +   F     R+ Q+ + I+ NA+
Sbjct: 639 EMRDFSLIEEVDSVVSTLWLGASNKNLYLNVNIDPAVENQFHGAPDRIRQVLTNIVGNAI 698

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+ +G   I    + +G   FSV + G  +  +    VF+ F        RR  G GLG
Sbjct: 699 KFTLEGGIDINIGVKPSGCIDFSVSDTGIGMTPEQLALVFDAFGQADASMSRRFGGTGLG 758

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +I +  + L GG +S +S     +  +  +P 
Sbjct: 759 TTISKQLVELMGGKISATSEFGKGSCFSFSLPL 791



 Score = 44.5 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 9/155 (5%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            +L  K          TI+   +GV  F  +G +  +N AF  L     + +        
Sbjct: 295 KELTEKARINEARLRATINTSVDGVLGFDSNGIVDSANDAFCQLVGCRSDDI-------- 346

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           I         + +  +    +I    D   +L    + L     + S+IP+  A   +  
Sbjct: 347 IGQDVRVLIRKENINEFNQYLIDRTQDNGHALGRGRDALIKH-FDGSLIPIRLAIGHVRL 405

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              +  V     L  + E  R   E +  F   +S
Sbjct: 406 NKESHFVAFMSDLRYRIEMERALREREAQFRSLIS 440


>gi|331013207|gb|EGH93263.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 641

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 147/369 (39%), Gaps = 6/369 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G +   N     +    E  +        
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVF 318

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + E    +       + +  R+   G+    S  +                 
Sbjct: 319 YLPEECPQHPEMALREATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKIT 378

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 379 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 437

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++   
Sbjct: 438 ---QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMA 494

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI +K +         VADRQRL+Q+   +LSNA+ ++     V ++  + +     
Sbjct: 495 ADANIELKALPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++    
Sbjct: 555 SVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEG 614

Query: 782 TTINCRIPS 790
                 +P 
Sbjct: 615 CRFILELPL 623


>gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1142

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 3/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A   +  K + L ++   K+ F+ ++S+ELR+PL +I+  + +L  +K   LN ++ +Y
Sbjct: 469 EARDQIQLKADELERSGRFKSEFLANMSHELRTPLNSILILSRILGENKGARLNEEEQRY 528

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S   LL L+NDILDLA V+AG ++L +  I    LL EV+ +         + +
Sbjct: 529 ASVIYNSGNDLLTLINDILDLAKVEAGKIELVHEHISTESLLVEVRNTFQKIAENKGLEL 588

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            V   G      + D  RLLQI   ++SNA+ F+S    V L  +  +G   F V + G 
Sbjct: 589 AVEKTGSCPDMLLTDHTRLLQILRNLISNAVKFTSAPGRVSLTISEADGYLHFEVADTGI 648

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +   S+F  F        R   G GLGLSI     +L  G +S+ S+    +    
Sbjct: 649 GIPLEKQASIFEAFQQADGSTSRKYGGTGLGLSISRELASLFNGSISLRSTPGEGSVFTL 708

Query: 787 RIP 789
           +IP
Sbjct: 709 KIP 711


>gi|239994497|ref|ZP_04715021.1| putative sensor protein [Alteromonas macleodii ATCC 27126]
          Length = 1023

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/418 (22%), Positives = 170/418 (40%), Gaps = 36/418 (8%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS---EGVAVFGPDGR 455
              VI        ++ +F + +   ++E     L KV+GE++  ++   + +      G 
Sbjct: 332 VYSVIGVVTLIFVSVLLFVHRSNSKNIE-----LAKVRGESVAIIAISKDAIFSVDSAGV 386

Query: 456 IKLSNPAFRSLWKTEENRLSPGTH--IRNIAAT-CSRYYNESDGWDLFAAIITSFDDERK 512
           +K  N A  SL+      +    +     ++         +      F       + E  
Sbjct: 387 VKSWNMAAESLFGIPSQLILNHHYSSFEQLSLLGLESVLTKGGKQSTFTTPYIDDEKEEH 446

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----------RALTEKNEA 561
           +L  T   +     ++S + +                R             + L E  + 
Sbjct: 447 TLLITASTIWGEQSQFSGVAVVIRDVTDERKAKDAIERVNLKLEEKVVSRTKELVEATQE 506

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            RKA  +K+SF+ ++S+E+R+PL  ++G   LLK      LN K  Q V  +  S   L 
Sbjct: 507 ARKASSVKSSFISNISHEMRTPLNGVVGSLSLLK---CQPLNEKAEQLVSMMEISCNNLS 563

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            L+ND+LDL+ ++AG + +N        L+  + +  A K     +++ V + G      
Sbjct: 564 VLINDVLDLSKIEAGKLDINNQYFDPLALIESIAKVFAVKAASKGLQLLVDTTGLPPVEI 623

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735
            +D  R+ QI S +L+NA+ F+ +G  + L+A+  +         FSV + G  I ++  
Sbjct: 624 NSDPHRINQILSNLLNNAIKFTEEGH-IKLQASLSDVDAGTQQLHFSVCDTGVGIAQENQ 682

Query: 736 KSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRIP 789
             +F  F         Q  G GLGLSI +    L GG ++ +S  +  +T +    +P
Sbjct: 683 PKLFTAFTQADASVATQYGGTGLGLSICKQLSQLMGGDITFNSEVDIGSTFSFFVTLP 740


>gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 891

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 10/297 (3%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +     E + L   L+  S+ +    I      Q   +     +  + +  L EK   L 
Sbjct: 431 VEQLLAESQVLTEELQTQSEEL--RGINEKLEEQNKNSEQKTRELEKTKTQLEEKARQLS 488

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            + + K+ F+ ++S+ELR+PL +++  +++L T+  G+LN  Q +Y   I  S   LL L
Sbjct: 489 LSSQYKSEFLANMSHELRTPLNSLLILSNILATNTEGNLNDHQVKYAYTIHQSGNDLLQL 548

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILDLA V+AG + L +  + L+++    +Q       +  +  K + D  L  +   
Sbjct: 549 INDILDLAKVEAGKIDLVHGKVCLHEISEFAEQQFLPVARQKGLSFKTVVDADLPQTLYT 608

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VIL--KAARDNGDFIFSVKNNGSSIPEDMCKS 737
           D QRL+QI   +LSNA  F+ +G     +      +R  G   FS+ + G  IP++  + 
Sbjct: 609 DEQRLMQIIKNLLSNAFKFTERGEVKFHIHHAQSGSRAKGGIAFSIIDTGIGIPKEKQEL 668

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F  F        R   G GLGLSI  +   L GG + ++S     +     +PS+E
Sbjct: 669 IFQAFQQADGTTNRKYGGTGLGLSISINMAQLLGGAIHVTSVPGKGSVFTLTLPSEE 725


>gi|28869899|ref|NP_792518.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28853144|gb|AAO56213.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 1170

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 5/334 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + E S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLAEQSQA--LADQRDALDRNNEELNIAQGELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPSENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEV 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +FSV+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LSI      L GG +S++S+    +     +P +
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQ 719


>gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01]
 gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01]
          Length = 1059

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 137/298 (45%), Gaps = 14/298 (4%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTE 557
           L    + S  DE +    +LE L     E S+      + T+           A     +
Sbjct: 327 LVLDFLKSESDETRP---SLEKLIQGKDELSVFAQKVERLTIEREHAKEKLTLAVEDAEK 383

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             +   +A + K+SF+ ++S+E+R+PL  +IG +++L  +    L   Q  YV+ I  SS
Sbjct: 384 AKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILADT---PLTPTQRDYVDTIETSS 440

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +LL+L+NDILD + +++G++ ++  +  + + + ++   +A K  E  I + V      
Sbjct: 441 QLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPDT 500

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPE 732
            +  + D  RL QI    +SNA+ F+++G        L+ + DN    F+V++ G  I +
Sbjct: 501 PARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIKTLEQSDDNVTIRFAVRDTGIGIDK 560

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              K +F  F        R   G GLGL+I    + L GG + + S     +     +
Sbjct: 561 QQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKGEGSCFYFDL 618


>gi|317485618|ref|ZP_07944494.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923155|gb|EFV44365.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 845

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 159/381 (41%), Gaps = 21/381 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           Q   E       K+     + + +   ++   D RI+  +     +     N +S     
Sbjct: 179 QKKAEQAIAYREKLFDILCNSIDDVFVIYHVRDKRIEYVSGNADRILGLGNNDISILYS- 237

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-PNAQTM 539
             ++A   +  ++      F A        + +L G      D  +   + P+  NA T+
Sbjct: 238 -RLSAANEKVLDDFSKQAPFDAPKGCDFSMKDTLTGE-----DRFMHLHLYPVKENAGTI 291

Query: 540 LTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              V+++D     +  + L +   + ++A+  K  F+  +S+E+R+P+  IIG   +   
Sbjct: 292 RYVVSLSDRTHEVKTRQTLKDALASAQQANTAKRDFLSRMSHEIRTPMNAIIGMATIAAA 351

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                 + + +  +  IS SS  L++L+ND+LD++ +++G + +++    L +L++ +  
Sbjct: 352 HIQN--HGRVADCLHKISFSSKHLMSLLNDVLDMSKIESGKLAVHHEEFDLPNLIDSIVS 409

Query: 657 SIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  +         V   G +    V D  R+ QI   +LSNA  F+ +G ++ L+ ++ 
Sbjct: 410 IMYPQTESQGQHFSVALSGIEEEKLVGDPLRINQILLNLLSNARKFTPEGGSIKLEVSQK 469

Query: 716 NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHG 769
             +      F+V + G  + E   K +F  F            G GLGL+I  + + L  
Sbjct: 470 RKNGGVLMRFTVSDTGIGLSEAFQKRLFKPFEQADSSISQKYGGTGLGLAITHNLVTLMN 529

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + + S +   +     +P 
Sbjct: 530 GTIGVRSKEHEGSCFTVELPL 550


>gi|144898063|emb|CAM74927.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1117

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 121/249 (48%), Gaps = 12/249 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E AL++  +   +A++ K++F+ ++S+E+R+P+  IIG + L   +    L+ +Q  Y
Sbjct: 356 QREDALSQARDEADQANQAKSAFLANMSHEIRTPMNAIIGLSGLALRT---GLDPRQRDY 412

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +S  LL ++NDILD + ++AG ++       + D+L++V   I  +  E  + I
Sbjct: 413 LIKIQNASQTLLGIINDILDFSKIEAGRLEFEQIEFSITDVLDDVANLITRRAEEKGLEI 472

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVK 724
              + G L    + D  RL Q+ + + +NA+ F+  G  V+       +      +FSV+
Sbjct: 473 VFATTGDLPQKVIGDPLRLAQVITNLCTNAIKFTHVGEVVVRVELQSISDGKACLLFSVR 532

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + E     +F  F        R   G GLGLSI    + L  G + + S     +
Sbjct: 533 DTGIGLTEQQAARLFEPFSQADASTTRQFGGTGLGLSICRRMVELMEGRIWVDSEHGKGS 592

Query: 783 TINCR--IP 789
           T +    +P
Sbjct: 593 TFSFTASLP 601


>gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
 gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
          Length = 914

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 152/355 (42%), Gaps = 23/355 (6%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           + +S GV +    G I     A+R L   E         I+ + +   R         + 
Sbjct: 170 EIISAGVVLVL--GLILSCFFAYRLLQDVEM-------PIKQMISMIDRIRRGHLDVRIE 220

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             ++   D  +  +      LS+  LE           +   +   +    E  L    +
Sbjct: 221 GKLLGELDTLKNGINAMAISLSEYHLEMQQSIDQATSDLRETLEQLEIQNVE--LDIAKK 278

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTI 619
             ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L+S Q  Y++ I  S+  
Sbjct: 279 NAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSSSQQDYLQTIEKSANN 334

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++NDILD + ++AG + L        D L+EV + +A   HE  + + +  D ++ +
Sbjct: 335 LLTIINDILDFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGLELNLRIDPRIPA 394

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDM 734
             + D  R+ Q+ + ++ NA  F+ +G     V LK  RD   +  F +++ G  I E  
Sbjct: 395 GVIGDPLRIQQVLTNLIGNATKFTERGHINVSVELKQQRDERLELQFVIRDTGIGISERQ 454

Query: 735 CKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              +F  F         +  G GLGL I +  +   GG +  SS     +T    
Sbjct: 455 QSQLFQAFRQADTSISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLHQGSTFWFT 509


>gi|228938688|ref|ZP_04101293.1| hypothetical protein bthur0008_13520 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971570|ref|ZP_04132194.1| hypothetical protein bthur0003_13480 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978181|ref|ZP_04138559.1| hypothetical protein bthur0002_13840 [Bacillus thuringiensis Bt407]
 gi|228781653|gb|EEM29853.1| hypothetical protein bthur0002_13840 [Bacillus thuringiensis Bt407]
 gi|228788229|gb|EEM36184.1| hypothetical protein bthur0003_13480 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821064|gb|EEM67084.1| hypothetical protein bthur0008_13520 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939196|gb|AEA15092.1| sensor protein resE [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 591

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ELTVDFKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
             IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
 gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
          Length = 1356

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 116/249 (46%), Gaps = 5/249 (2%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                +  + +  +  + E L+  ++++++F   +S+ELR+PLT I+   + L      + 
Sbjct: 812  QRTYELAQQKEEIASQAEKLKVLNQVQSNFFSGISHELRTPLTLIVEPAEKLLQY---NQ 868

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                 +Y + I  ++  LL L+N ++D + +++G M L  S   L  LL EV  S     
Sbjct: 869  EEPGKRYTQTILGNAQRLLRLINQLMDFSKLESGKMTLQLSNNSLYQLLVEVIASFELLA 928

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + NI +K+ +  +   +  D  ++ ++   ++SNA+ F+     + +   +   +   +
Sbjct: 929  QQKNIELKLTASNQALHYKFDHDKVEKVVFNLISNALKFTPTQGNIEVHLWQSPDEVKIT 988

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  I       VF+RF            G G+GL++V+  + LH G + ++S +  
Sbjct: 989  VTDTGIGIAPADLPFVFDRFYQVDGSTTKNYPGTGIGLALVKELVELHEGSIEVTSQENK 1048

Query: 781  VTTINCRIP 789
             +T   + P
Sbjct: 1049 GSTFVVKFP 1057


>gi|226947053|ref|YP_002802126.1| Periplasmic hybrid histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
 gi|226721980|gb|ACO81151.1| Periplasmic hybrid histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
          Length = 1030

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 156/371 (42%), Gaps = 14/371 (3%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT--HIRNI 483
           E   +   ++Q    D +   + V   + R    N AF + ++     L+  T      +
Sbjct: 145 EQAGSDESELQRVLFDSIPFPLFVKDREARYIRFNRAFLNNFRVRAEELTGKTILDFLEL 204

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A     Y  +    L    + S +   +   G       ++  Y       A  +   +
Sbjct: 205 PAEERSRYQAASERLLREGGLFSTERRIRYADGREHPSIYTLAGYPGGDGRPAGLLGMLI 264

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++    +ERAL E  E   +A  +K+ F+ ++S+E+R+P+  I+G T L   S    L+
Sbjct: 265 DISAQKASERALAEAKELAEEATRMKSDFLANMSHEIRTPMNVIMGMTQLALDS---GLD 321

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  +VE    ++  LL ++NDILD + ++AG M+       L  + + +      K  
Sbjct: 322 ERQRNFVEKAHDAARSLLGIINDILDFSKIEAGKMRFEQVDFQLESVTDHLADLSVLKAQ 381

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NG 717
           E  + +       + +  + D  RL Q+ S +L NA+ F+S+G  + L+  ++       
Sbjct: 382 EKGLELLFDIATDVPTALIGDPLRLGQVLSNLLDNAIKFTSRGE-ITLRIRKECEDERGV 440

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  + E   + +F  F         Q  G GLGL+I +  + +  G + + 
Sbjct: 441 RLRFEVRDTGIGLNETQRRKLFRAFTQADSSTSRQYGGTGLGLAICKHLVAMMDGEIGVD 500

Query: 776 SSDEGVTTINC 786
           SS    +T + 
Sbjct: 501 SSPGVGSTFHF 511



 Score = 41.1 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 42/227 (18%)

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ---SFDLVAETQNDCAIKIE 156
                  +      + E+  +     +L+   E+L  +GQ   +  +VA T     +   
Sbjct: 67  PATTGDGRDPEAFQAGEDIARGKALERLAARLERL--DGQVDSAMRIVAATLLPGLLLAA 124

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
             + G     R  S      +   T  +    S+   + +VLFDS+ F ++ +D+    +
Sbjct: 125 FALHGRH---RRRSP----RDQPRTPPEQAG-SDESELQRVLFDSIPFPLFVKDREARYI 176

Query: 217 WANISYKKN----------------TETEGIVFQKAIGESRKLFKE----EIKKRMISSS 256
             N ++  N                 E       +    S +L +E      ++R+  + 
Sbjct: 177 RFNRAFLNNFRVRAEELTGKTILDFLELPAEERSRYQAASERLLREGGLFSTERRIRYAD 236

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
             E     T++    G+ +           G  G+ ID+S +     
Sbjct: 237 GREHPSIYTLAGYPGGDGR---------PAGLLGMLIDISAQKASER 274



 Score = 41.1 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 62/210 (29%), Gaps = 16/210 (7%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +++   +       + +    +    ++   M   +A         +   HG ++     
Sbjct: 78  AFQAGEDIARGKALERLAARLERLDGQVDSAMRIVAATLLPGLLLAAFALHGRHRRRSPR 137

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
               +  E       S E  +   L        ++   + + D+       NR+F+  + 
Sbjct: 138 DQPRTPPEQAG----SDESELQRVL------FDSIPFPLFVKDREARYIRFNRAFLNNFR 187

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +    L    +  + LE         +  + +  +E      +    + D    P+  TL
Sbjct: 188 VRAEELTGK-TILDFLELPAEERSRYQAASERLLREGGLFSTERRIRYADGREHPSIYTL 246

Query: 401 HVIVTSNPRG---GTIWMFENLTVQVDLET 427
                    G   G + M  +++ Q   E 
Sbjct: 247 --AGYPGGDGRPAGLLGMLIDISAQKASER 274


>gi|329768145|ref|ZP_08259650.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341]
 gi|328838056|gb|EGF87675.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341]
          Length = 641

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 166/422 (39%), Gaps = 20/422 (4%)

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-NTLVK 434
           + + S  +   +      L N  T+  I T +  G    +F  ++ +++ E     T  +
Sbjct: 229 KTVTSSIEKMSSQVKKMALGNYGTVVGIDTDDEIGDLAKVFNQISKRIEEEQAVTETERR 288

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                I+ + +G+     +G+I L N +   +    ++ +  G  +  I           
Sbjct: 289 KLATIIESMMDGIITTDNNGKIILINTSAEDMLGGRDDEIFIGKDVLKILNITE------ 342

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                + +I    + E   L        + +L   I  +            T+       
Sbjct: 343 -----YESIEEILEAEDSLLVNASNDSDELLLRAEISKIEKEDKEDLTQMSTELEGYIIV 397

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +   + ++ +  FV  VS+ELR+PLT +  + + L+   L        Q+++ I 
Sbjct: 398 LYDVTDQ-ERQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVLED-KELAPQFIDTIH 455

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +T ++ +VN+++ L  +D          I +N +L ++    A    E N        
Sbjct: 456 KETTRMIRMVNELMQLGKMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKN--FIKHIS 513

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPE 732
                   D+ +L Q+F  I++NA+ +S  G  + ++  ++  +     S+K+ G  IP 
Sbjct: 514 KTPIFVEGDQDKLTQVFDNIVNNAIKYSPNGKNITIRVRQNYHHNRVSISIKDEGVGIPL 573

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +FNRF       QR   G GLGL++ ++ +  H G +   S +   + I   +P 
Sbjct: 574 VHIDKIFNRFYRVDKSRQRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTLPC 633

Query: 791 KE 792
           ++
Sbjct: 634 EQ 635


>gi|189423648|ref|YP_001950825.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419907|gb|ACD94305.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 667

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 129/262 (49%), Gaps = 10/262 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N           ++ +A   L +       A+  K+ F+ ++S+E+R+P++ +IG   LL
Sbjct: 257 NGLARSLQQRSEENRQAREELLQAKSEAEAANTAKSEFLANMSHEIRTPMSGLIGNAQLL 316

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +   L  LN++Q+ Y+  I   +  L++L+ND+LD++ ++AG ++L  +   L   + ++
Sbjct: 317 R---LTQLNAEQTGYLTNIETDAKNLMSLINDVLDISKIEAGKLELESAPFSLRSCVAQL 373

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
            +S   ++    I +       L  S   D+ RL QI   ++ NA+ F++KG   V ++ 
Sbjct: 374 LKSQEARIAAKAIVLTHEIAADLPDSLFGDQLRLKQILYNLVGNAIKFTAKGEIRVKVEL 433

Query: 713 ARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
              + D   F FSV + G  I  +  + +F  F+       RR  G GLGLSI    +  
Sbjct: 434 LERHDDKARFCFSVTDTGIGIRPEAREKIFAPFIQADASVTRRFGGTGLGLSICSRLVQQ 493

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG +++ S +   +T +  +P
Sbjct: 494 MGGGITVESEEGKGSTFSVTLP 515


>gi|170701268|ref|ZP_02892235.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
 gi|170133827|gb|EDT02188.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
          Length = 1276

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 118/253 (46%), Gaps = 6/253 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            + + +  R +  L         A+  K+ F+  +S+E+R+P+  ++G T+LL+ ++   
Sbjct: 536 NMMLDEIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTR--- 592

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L SKQ ++V+ +  S   LL +++DILD + ++AG + L      L+ LL++V   +   
Sbjct: 593 LTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPN 652

Query: 662 MHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                + +    +D        D  RL QI + +L NA+ F+  G   +  A  D+G  +
Sbjct: 653 ARRKELELVYQRADSVPQRMRGDPVRLRQILTNLLGNAIKFTEHGHVGLSAAYSDDGRIV 712

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F + ++G  I  D+   +F  F         +  G GLGL I      + GG +++ S+ 
Sbjct: 713 FKIADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLGLVISRQLAEMMGGTLTLDSTP 772

Query: 779 EGVTTINCRIPSK 791
              +      P +
Sbjct: 773 GKGSVFTVTTPFE 785


>gi|237715649|ref|ZP_04546130.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408658|ref|ZP_06085204.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294646689|ref|ZP_06724314.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807119|ref|ZP_06765937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444358|gb|EEO50149.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353523|gb|EEZ02617.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637977|gb|EFF56370.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294445685|gb|EFG14334.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 631

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 128/238 (53%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          +  +Y + I 
Sbjct: 398 LSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PHTEDPVEMREYADIIE 454

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++ +LL L+NDILDL+ ++AG      S+I +N  + E++QS+  ++  +++ +     
Sbjct: 455 TNTDLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTER 514

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                F  D+ RL+Q+ +  ++NA+ F+  G+  +     D     F V + G  +  + 
Sbjct: 515 LPGCLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCGMSNEQ 574

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           C+ VF RFV      Q  G GLGLSI  + +   GG + + S +   +T    +P ++
Sbjct: 575 CEHVFERFVKYNPFIQ--GTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLPYRK 630


>gi|228918077|ref|ZP_04081605.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930471|ref|ZP_04093471.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936745|ref|ZP_04099536.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228949187|ref|ZP_04111455.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124968|ref|ZP_04254142.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228658469|gb|EEL14135.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228810470|gb|EEM56823.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228822954|gb|EEM68795.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829190|gb|EEM74827.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841557|gb|EEM86673.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 588

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 306

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 307 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 366

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 367 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 426 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 484

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 485 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 859

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 159/368 (43%), Gaps = 10/368 (2%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +    V    I ++   +      GR    N  F +   T+      G    ++  + +
Sbjct: 50  LDHQQAVLKYVIANVPHAIFWKDRHGRFLGGNQNFLNDTNTKVLENLVGKTDFDVWGSKN 109

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-----FV 543
                    ++        D E   L+   E      L  S +P+ + +  +T     + 
Sbjct: 110 AECFVRIDREVMEGGTPILDVEEPLLRPDGE---QRFLLTSKVPIRDERGEVTGILGIYA 166

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+  R E  L +  EA   A   K  F+  +S+ELR+PL+ I+G  + L +S+   L+
Sbjct: 167 DITERKRMEIELQKAKEAADAAACAKGEFLTVMSHELRTPLSLILGPLESLLSSRDEPLS 226

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    +E I  S   L  LV+D+LD   ++AG M++++  + + +L++++ +       
Sbjct: 227 PRVRADLELIQRSGRRLRRLVDDVLDHQKIEAGKMQIDWEAVDVGELVSDMVEEARPAAA 286

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + + +  D +L    ADR++L +I   +L NA+ F+  G  V +     +G F  SV
Sbjct: 287 RGGLDLSIRVDPELRRVPADRRKLEKIALNLLGNALKFTPPGGRVTVDLRALDGLFELSV 346

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP D    +F RF     +   +  G G+GLS+ +    L GG V + S     
Sbjct: 347 EDTGPGIPADRRHLLFQRFQQIDASATRKHEGTGIGLSLAKELTELMGGAVGVESEPGVG 406

Query: 782 TTINCRIP 789
           +    R+P
Sbjct: 407 SRFFVRLP 414



 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 118/333 (35%), Gaps = 35/333 (10%)

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
               R   +    D+   ++T+    R S    +  L     EY   P    +       
Sbjct: 532 ELVRRLKGDPALRDIPVLLLTA----RASGAEAVGGLDVGADEYMSKPFDPLELRARVRA 587

Query: 545 VTDSVRAERALTEKNEALRKADEIKNS----------------FVQHVSYELRSPLTNII 588
                RA   L  KN+ L  A E  +                  V  +S+E+ +P++ I+
Sbjct: 588 AERLHRAYLELAAKNDELAAALEQLSEAQQELLQAGKMAAIGTLVAGLSHEMNNPVSAIL 647

Query: 589 GFTDLLKTSKLG----SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
               LL             +   + +  I   +    +LV  +L+ A    G   +    
Sbjct: 648 MNAQLLLRRHRKGHGLPDEASLLKALGTIERQAIRCSDLVTALLEYAR---GK-PIGREP 703

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSS 703
             +   L       A +  E  + ++   +   L   + +  +L      ++ NA+D S 
Sbjct: 704 CDVRAALRRAVDLSAPRARERRVHLETDGNSSALPEVLVNASQLESALLNVIGNALDASP 763

Query: 704 KGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            GS V+++A      D       V ++G  I  +    +F  F +    GQ  G GLGLS
Sbjct: 764 HGSAVVVEARPRPRGDIHGVEIDVHDHGCGIRAEDLSRIFEPFFTTKPPGQ--GTGLGLS 821

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +   FI  H G + I S+    TT+   +P+++
Sbjct: 822 LTHRFIEEHQGSIRIESAPGEGTTVRMWLPARQ 854


>gi|116496229|ref|YP_807963.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
 gi|239630680|ref|ZP_04673711.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301067831|ref|YP_003789854.1| signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|116106379|gb|ABJ71521.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           casei ATCC 334]
 gi|239526963|gb|EEQ65964.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300440238|gb|ADK20004.1| Signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
          Length = 636

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 151/406 (37%), Gaps = 45/406 (11%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   + +   + +    + H+++GV      G + + N    +   
Sbjct: 240 GQLAVAVNNLSVRVEEAQEASEAERRRLDSVLAHMTDGVIATDRRGNVIIINQTALNFLN 299

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T+   +  G  I  +      Y       DL         D  + L   L L     +++
Sbjct: 300 TKNEDV-IGVSILKLLNIAKDY----TLRDLLEHQTELLLDFSEQLDHELILR----VDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 351 SLIQRETGFISGLVAVLHDVTEQQ-----------KIDRDRKEFVSNVSHELRTPLTSVR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++      +  ++ ++ND+L L+ +D+G  K N  T+ LN
Sbjct: 400 SYIEALSDGAWKD-PKLAPRFLNVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLN 458

Query: 649 DLLNEVKQSI---------------------ATKMHENNIRIKVISDGKLGSFVADRQRL 687
           +  N V                              +    IK     +      D  + 
Sbjct: 459 EFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQKKRYSIKREITDQDLWVEIDTDKF 518

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
           +Q+   I++NA+ +S  G T+  +  + +   I S+ + G  IP      +F+RF     
Sbjct: 519 MQVIDNIMNNAIKYSPDGGTITARLFQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDK 578

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++ G GLGL+I +  +    G + + S +   +T    +P +
Sbjct: 579 ARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGRGSTFYISLPYE 624


>gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 1778

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q        ++   A + L E+ E L  +   ++ F+ ++S+ELR+PL +++    LL  
Sbjct: 1255 QNRDIEAKNSEIEEARQVLEERAEQLAVSMRYRSEFLANMSHELRTPLNSLLILAKLLAD 1314

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  G+L+ KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 1315 NAEGNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLIDYVEA 1374

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +      E  + + V    +L  +   D QRLLQ+   +LSNA+ F+  GS  ++++ AR
Sbjct: 1375 TFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPAR 1434

Query: 715  DN--------------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
            D+                        FSV + G  I     + +F  F         +  
Sbjct: 1435 DDVPQAIREQLLEAGSLTDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYG 1494

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +   S     +T    +P 
Sbjct: 1495 GTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1532


>gi|168022997|ref|XP_001764025.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162684764|gb|EDQ71164.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 725

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 160/401 (39%), Gaps = 43/401 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR--------SLWKTEENRLSPGT 478
            + N +  +    +  +   ++    +      N   +         L       L    
Sbjct: 4   ERTNNIELLLQMVLKDVPVIISHCDKELTYTYVNACVQGMKGKKDTELVGLVPGALETMR 63

Query: 479 HIRNIAAT-CSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             + +     ++    +   D F    ++ + +  R      L +++ + ++ +   L  
Sbjct: 64  IKKEVLELGLAQGKELTISMDGFGKRWLVVACEPLRNKAGEILGVIT-ACMDVTEQALAR 122

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +       +      E+ L        +A E KN F+  +S+E+R+PL  + G   +L 
Sbjct: 123 EKLAQMREEMAVREATEKELRRAIRLADEAMEAKNRFLAVMSHEIRTPLNGVFGMAQVLA 182

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T+    L+ +Q + V  +  S+ +LL +++DILDL+ V+AG MKL    +   D++  V 
Sbjct: 183 TT---PLDPEQRELVSAMVFSADVLLAIISDILDLSKVEAGTMKLEERELNPRDIVKHVV 239

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
           ++      +  I I+  I+D        D  R+ Q+ + ++ NA+ F+ KG   V L  A
Sbjct: 240 RTAIAASKDRGITIQADIADDVPSMVYGDPLRIKQVITNLVFNAVKFTRKGHVKVRLHIA 299

Query: 714 R------------------------DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAH 747
           +                         +    F +++ G  IP++   ++F +F  V ++ 
Sbjct: 300 KFPIDERETDVNLDVSDTKTSDQVSRDFWLKFEIEDTGIGIPKEALPTLFEKFTLVHSST 359

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  G GLGL+I +  + L  GH+S+ S     +T    I
Sbjct: 360 TRKYGGTGLGLAICKQLVELMDGHISVISKVGKGSTFTFTI 400


>gi|138896292|ref|YP_001126745.1| sensory box histidine kinase PhoR [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267805|gb|ABO68000.1| Sensory box histidine kinase PhoR [Geobacillus thermodenitrificans
           NG80-2]
          Length = 583

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 149/371 (40%), Gaps = 22/371 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           ++              I+++  G+      G I L N AF++ +  + +      +    
Sbjct: 232 EMSRAREIQTDRLHTLIENVGSGLLFIDHRGHIHLINRAFQTYFHLDSSDCLYRPY---- 287

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               +      D   L   I  +    R+ ++ T+ +      +    P+         +
Sbjct: 288 ----ADVLPHRDIIKLIDDIFITETAMRRHMRLTIGIERKH-FDVYGAPIIGTNAEWKGI 342

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V      E         L++ ++I+  FV +VS+EL++P+T+I GF + L    +    
Sbjct: 343 VVVFHDITE---------LKRLEQIRKDFVANVSHELKTPVTSIKGFAETLLDGAMKD-E 392

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                ++  I   S  L  LV ++LDL+ ++    +L    + + +++ E       K  
Sbjct: 393 EALEHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDVAEVIAEAAAVFRQKAE 452

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E  I ++V +   L     DR RL QI   +L+NA+ ++ +   V ++A     + +  V
Sbjct: 453 EKQIDLRVEALPGL-VIRGDRNRLKQILINLLANALAYTPEHGQVAVEAEEKEKEVLIHV 511

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I E     +F RF     A      G GLGLSIV+  +  H G+++++S     
Sbjct: 512 KDTGIGIEEKEIPRIFERFYRIDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASEVGRG 571

Query: 782 TTINCRIPSKE 792
           T      P  E
Sbjct: 572 TVFTIHFPKPE 582



 Score = 38.8 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 291 IAIDVSKEITVND-QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A ++ +     + Q    + ++ N+   +   D   ++   NR+F   + +D +     
Sbjct: 226 LARNLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHIHLINRAFQTYFHLDSSDCLYR 285

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           P  D L             +     + ++         H D +  P      +I T+   
Sbjct: 286 PYADVLPHRDIIKLIDDIFITETAMRRHMRLTIGIERKHFDVYGAP------IIGTNAEW 339

Query: 410 GGTIWMFENLTVQVDLET 427
            G + +F ++T    LE 
Sbjct: 340 KGIVVVFHDITELKRLEQ 357


>gi|152995670|ref|YP_001340505.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836594|gb|ABR70570.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 789

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 21/308 (6%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           +S G  +F   ++    + K  +      ++ +LEYS         + T     D    E
Sbjct: 119 DSLGKPIFVCGVSRDITKIKEAETVALKANEKLLEYST-------ALETINQELDRKVQE 171

Query: 553 R--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           R   L      + ++ E K+SFV  +S+E+R+P+  +IG + L   +   SLN +Q  Y+
Sbjct: 172 RTKELENAKRIVEESLEAKSSFVARMSHEIRTPINAVIGLSHLALKT---SLNHEQQDYI 228

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL+LVND+LD + ++AG M +         ++       A K  E  + + 
Sbjct: 229 NTILSSGENLLSLVNDVLDFSKIEAGKMGIEEVPFSPKSIVQHAINMNAIKAEEKKLTVT 288

Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVK 724
           V     L    + D   + Q+   +++NA+ F+ +G  V ++   D  D         V 
Sbjct: 289 VDISPSLPPMLLGDPLHIQQVLVNLVTNAVKFTERGG-VCVRMYTDENDDKSVLLRCDVI 347

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I +     +F  F        R   G GLGL+I     +L  G + + S     +
Sbjct: 348 DTGIGISKAYLDQLFQSFHQADDSVTRKFGGTGLGLTISRQLCSLMSGDIWVHSELGQGS 407

Query: 783 TINCRIPS 790
           T +  +P 
Sbjct: 408 TFSFVLPL 415


>gi|220930742|ref|YP_002507651.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
 gi|220001070|gb|ACL77671.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
          Length = 617

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 158/368 (42%), Gaps = 30/368 (8%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-HIRNIAATCS--------- 488
            I  +++ V +    G+I  +N + + L    +  LS    H       CS         
Sbjct: 233 IISKVTDMVIITDATGKILEANNSLKELSGYSDTDLSEKDIHTLFSPKICSDKSSVKLSG 292

Query: 489 -RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            ++  + +        I+    E K + GT  +L  ++L  +                 +
Sbjct: 293 YKFLTKENRTIPVNISISQIYSEDKIILGTAYVLQKNLLNLT-------------DKAAE 339

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLN 603
                R  ++ +E L++ D++K  F+ +VS+ELR+PL  +I    L    +  +      
Sbjct: 340 EAAVTRYSSQTSEKLKEWDKLKTDFLCNVSHELRTPLNLMISSLKLSSLKISQNHGVLDT 399

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +   ++   ++ +   L  ++N+I+D+  +DAG ++LN S   + D++ E   S+A+ + 
Sbjct: 400 ALMHKHFHIMNQNCFRLTRIINNIIDITKIDAGSLELNLSNNNIVDIVEETVLSVASHIK 459

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  I +   +D +      D  ++ +I   ++SNA+ F++ G  + +  A        SV
Sbjct: 460 DKEITLIFDTDVEEKFLACDPDQIQRILLNLISNAVKFNNDGREIYVSIADSIDSVKISV 519

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+NG  I  +    +F RF+        Q  G G+GL+I    + LH G +++ S     
Sbjct: 520 KDNGIGISLENQPLIFERFIQVDKSLTRQHEGSGMGLTITRYLVELHKGTIALESEPNIG 579

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 580 STFTITLP 587


>gi|120553437|ref|YP_957788.1| histidine kinase [Marinobacter aquaeolei VT8]
 gi|120323286|gb|ABM17601.1| amino acid-binding domain sensor histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 922

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 119/239 (49%), Gaps = 18/239 (7%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  +IG++DLL  S     + +Q  Y+  I A S  LL L+NDIL
Sbjct: 580 KSEFLANMSHEIRTPMNAVIGYSDLLYNSV---TDPQQRNYLNAIRAGSRSLLMLINDIL 636

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRL 687
           DL+ ++AG M+L++  + +  LL++V+     +  E  I ++V    G   + + D  RL
Sbjct: 637 DLSRIEAGKMRLDFGPVSVRRLLSDVRHIFDLRATEQGITLEVSVGSGMPSAMMLDETRL 696

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPEDMC 735
            Q+   ++ NA+ F+ +G   +   A+  G+             + +V + G  I  D  
Sbjct: 697 RQVLFNLVGNAIKFTHEGGVTVRAVAKPLGEPADADSEVCYYRLVVTVADTGIGIAPDQQ 756

Query: 736 KSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           + +F  F         +  G GLGL+I    + + GG +++ S     +T    +P  E
Sbjct: 757 ERIFEAFEQQEGQSSRRYGGTGLGLAISRKLVEMMGGRLTVKSEANVGSTFKVVLPRVE 815


>gi|313159680|gb|EFR59037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 1049

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 130/251 (51%), Gaps = 7/251 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T   +T+  R E+ L    +   +++ +K +F+ ++S+E+R+PL  I+GF+ +L ++ 
Sbjct: 660 VGTSQVITERKRMEQELLSARDRAEESNRLKTAFLANMSHEIRTPLNAIVGFSAILAST- 718

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ +YV  I  ++ +LL L+ DILDL+ ++AG +   ++   LN+L+ E +  I
Sbjct: 719 --DEEQEKQEYVSIIENNNALLLQLIGDILDLSKIEAGTLDFIHTDFDLNELMREKENVI 776

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K+ E  + +      +  S   DR RL Q+   +L+NA  F+  GS +       + +
Sbjct: 777 RMKVRE-GVELLFEQKYEQCSVCTDRNRLSQVIINLLTNAAKFTQTGS-IRFGYEMRDRE 834

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             F V + GS IP D  + VF RFV       ++G GLGLSI +  +   GG + + S +
Sbjct: 835 LYFWVSDTGSGIPADKTEQVFERFVKLNTF--KQGTGLGLSICKMIVEHLGGRIGVESEE 892

Query: 779 EGVTTINCRIP 789
              +     +P
Sbjct: 893 GKGSKFWFILP 903


>gi|255530499|ref|YP_003090871.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343483|gb|ACU02809.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 1161

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 124/260 (47%), Gaps = 18/260 (6%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A+ A++ K E L  + + K+ F+ ++S+ELR+PL +I+    +LK ++  +LN  Q +
Sbjct: 469 NQAKEAMSLKAEELEISSKYKSEFLANMSHELRTPLNSILILARILKENRPENLNEDQIK 528

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  + T LL L+NDILDL+ +++G + L+   +    +  +++           I 
Sbjct: 529 YAGVIHNAGTDLLTLINDILDLSKIESGKLDLSILPLKPLVIKQDMEALFNELAKSKKIS 588

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------- 714
              + D +L  + + D+ RL QI   +LSNA  F+ +   + +  ++             
Sbjct: 589 FHTVLDKELPATLLTDQSRLEQIVKNLLSNAFKFTPEHGEITMTISKASAGTLFFSRQLK 648

Query: 715 --DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                    SVK++G  IP D  K +F  F        R   G GLGLSI +   ++ GG
Sbjct: 649 TTTEDIIAISVKDSGIGIPADKQKLIFEAFQQADGSTSRKYGGTGLGLSISKELAHILGG 708

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + ++S     +T    +P 
Sbjct: 709 EIQVNSKQGEGSTFTLYLPK 728


>gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 835

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 12/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            + RAL ++    R   + K+ F+  +S+E+R+PL+ +IG ++LL     G L+ +Q ++
Sbjct: 257 ESRRALEDEAREARATAQAKSEFLATMSHEIRTPLSGVIGMSELLL---GGRLSGEQREF 313

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E ++ S+  LL+L+NDILD +  ++G ++L      L  L  +V Q + ++  +  I +
Sbjct: 314 AETLNTSAEALLSLINDILDFSKFESGHLELEEVPFDLQALTEDVVQILGSRARKKRIDL 373

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
               D  L   FV D  R+ QI   ++ NA+ F+ +G  V+L    +          F V
Sbjct: 374 IARYDNNLPRFFVGDPGRIRQILLNLVGNAVKFTERGH-VLLAVHHNGDSDDKIRLHFEV 432

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IPE+    +F+RF+        +  G GLGL+I    +    G +S+SS     
Sbjct: 433 EDTGIGIPENSLPHIFDRFIQVTSGEARRFGGTGLGLAISRQLVERMSGQISVSSVLGKG 492

Query: 782 TTINCRIPSK 791
           +T    +P +
Sbjct: 493 STFRFLLPLQ 502


>gi|160937422|ref|ZP_02084783.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439491|gb|EDP17241.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1114

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 97/531 (18%), Positives = 202/531 (38%), Gaps = 48/531 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF--HNRSFVELWEIDLAFLATNPSNDELL 356
             + +Q  +   + + +   IA+        F   N+  + L+               L 
Sbjct: 314 RKLKNQAVYISRLYNAVPEGIALMSVEAPYDFRLMNQEGMRLFRCQEGASNEAMKGKSLR 373

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH---LPNGQTLH--VIVTSNPRGG 411
           + +      PE  +++   +       S   +        L NG      ++  +    G
Sbjct: 374 DVIH-----PE--DYENLVQLFKDTADSGRKNIFEVRVITLDNGFFWAAGIVERTLDENG 426

Query: 412 ---TIWMFENLTVQVDLET-----KYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNP 461
               I  F ++T +   E      K    + + G   +     +++             P
Sbjct: 427 NPVLISAFHDITDEKLAEEAAEREKLQERLTLVGAISNAYPVIISLNLTRDSLNFIYVKP 486

Query: 462 AFRSLWKTEE------NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL- 514
                   +E        ++   H  ++   C R+  E+    L       F D R+ L 
Sbjct: 487 GLMLELGNQESYSQLYEYVAASIHPEHLEEFCRRFSAENLNKTLGQEKNEVFLDVRQMLG 546

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADEIK 569
            G    +S  ++     P    +  +      D  R E      AL    +  R A E K
Sbjct: 547 DGRYHWVSMQIIHVD-NPYSGDKLAILISRRIDEQRYEEEQKRSALQSALDNARAASEAK 605

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+++R+P+  I+G T  + +++L     +  + ++ IS SS  LL+L+ND+LD
Sbjct: 606 SQFLSNMSHDIRTPMNAIVGMT-AIASTRLDD-RERVMECLKKISLSSKHLLSLINDVLD 663

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLL 688
           ++ +++G + +      L +L+ E  + +  +    ++ + V   G K    V D  R+ 
Sbjct: 664 MSKIESGKLSIREEPFNLAELVTESAELVRPQAEAKHLEMDVHLKGLKNEEVVGDSLRIR 723

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRF 742
           QI+  ILSNA  ++ +G +V ++  ++       G ++F   + G  +  +    +F  F
Sbjct: 724 QIYINILSNAAKYTPEGGSVHVEVRQEQGAGRGYGRYVFRCADTGIGMSSEFMSKLFQPF 783

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                    R  G GLG++I ++ I+L  G + + S     +     +P +
Sbjct: 784 ERAQDSTNSRVTGTGLGMAITKNLIDLMNGDIRVESRPREGSVFTVALPLQ 834


>gi|146280453|ref|YP_001170606.1| hypothetical protein PST_0056 [Pseudomonas stutzeri A1501]
 gi|145568658|gb|ABP77764.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 1012

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 99/558 (17%), Positives = 201/558 (36%), Gaps = 49/558 (8%)

Query: 247  EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
            E + +      L      +   L  G    +  V  +    EA  A+  S+        +
Sbjct: 482  EFRIQHPQRGLLWAEGRASAERLADGTVLWHGFVTEITELMEATRALQKSE--------S 533

Query: 307  HTYEILHNLTVAIAIF---DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
                ++ NL   +      D  R + + +     L     +          + + +RS  
Sbjct: 534  RFRAMVGNLP-GVVYRCRNDGRRRMSYLSEGIERLTGYPASDF--------VGDRVRSYG 584

Query: 364  KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVTSN-------PRGGTIW 414
             L    +    +++      + ++ +  + + N  G+T++V   +        P G    
Sbjct: 585  SLIHPDDQAQAEQS-----PAQDSFERIYRITNAEGRTVYVREKARVLRERDDPVGWCDG 639

Query: 415  MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
               ++T Q   + +     +     ID++ + + +    G I+  N A   ++    + +
Sbjct: 640  FIWDVTDQALAKQEMEERERYLSMLIDNVIDAIIIIDGRGIIETFNHAAEQIFGYRSDEV 699

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              G ++  +     R  ++           +   ++ + L           +E  +  + 
Sbjct: 700  -IGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRRNGETFTIELRVSQIS 758

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +         V D    +R            + +K+  V  VS+ELR+PLT+I G   L+
Sbjct: 759  HHGERRFIGLVRDITERKR-----------IERMKSELVSIVSHELRTPLTSISGALGLI 807

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                LG  +    Q +     +S  L  LV+D+LD+  + AG M L      L   +   
Sbjct: 808  VGGALGEPSPTMLQMLTIAHQNSLRLGRLVDDLLDMDKLVAGKMTLQLHGHSLVRQMQLA 867

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++      ++ + +++     L   +AD  RL Q+ + ++SNA+ FS +G TV L A +
Sbjct: 868  TEANQGYAAKHGVYLQLEPLPTL-QLIADDDRLQQVLANLISNAVKFSPEGGTVSLGAQQ 926

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
                    V++ G  I  +    +F +F         Q+ G GLGL+I +  I    G +
Sbjct: 927  RGAWVRIWVRDQGPGIAPEFHARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRI 986

Query: 773  SISSSDEGVTTINCRIPS 790
               S         C +P 
Sbjct: 987  GFDSEPGHGACFWCELPL 1004


>gi|229176140|ref|ZP_04303633.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
 gi|228607375|gb|EEK64704.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
          Length = 588

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 306

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 307 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 366

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 367 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 426 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 484

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 485 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|213967062|ref|ZP_03395212.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301385247|ref|ZP_07233665.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302063302|ref|ZP_07254843.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302130188|ref|ZP_07256178.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213928384|gb|EEB61929.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 1170

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 5/334 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + E S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLAEQSQA--LADQRDALDRNNEELNIAQGELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPSENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEV 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +FSV+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LSI      L GG +S++S+    +     +P +
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFTLVLPEQ 719


>gi|293553005|ref|ZP_06673650.1| sensor protein YycG [Enterococcus faecium E1039]
 gi|291602811|gb|EFF33018.1| sensor protein YycG [Enterococcus faecium E1039]
          Length = 611

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 147/384 (38%), Gaps = 24/384 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  +++         +      + H+++GV      G++   N    SL  
Sbjct: 236 GQLADTFNQLAERIEEAQDTMEAERNRLDSVLSHMTDGVIATDRRGKVVTINDMAVSLLD 295

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +    + G  I  +      Y       D    ++       +S Q  L       +++
Sbjct: 296 IKNEE-AIGQSILTLLDIEEEYTLRKLLEDPNEMVLDRSTSTLESDQMILR------VDF 348

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 349 SMIRRESGFISGLVAVLHDVTEQE-----------KTERERREFVSNVSHELRTPLTSMR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L+L+ +D G  +L    +  N
Sbjct: 398 SYIEALSEGAWKD-EEVAPNFLKVTLDETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFN 456

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   E N +I+     +      D  +++Q+   I++NA+ +S  G 
Sbjct: 457 ELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGG 516

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           T+  +    + + I S+ + G  IP+     VF RF        R   G GLGL+I    
Sbjct: 517 TITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREV 576

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I  H G +   S +   +T    +
Sbjct: 577 IKAHRGAIWAESKEGKGSTFYISL 600


>gi|119509031|ref|ZP_01628182.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
 gi|119466197|gb|EAW47083.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
          Length = 1045

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 90/507 (17%), Positives = 201/507 (39%), Gaps = 21/507 (4%)

Query: 293  IDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLAT 348
            +++ +   V+ +L H+ + LHN+  ++  F         +   N ++++++ +  + +  
Sbjct: 544  LEIQERQRVDQELRHSQQRLHNILNSLFSFVGVISTEGIIIEANEAWLKIFSLTDSSVIG 603

Query: 349  NP-SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
             P +      +        +    +  + N           ++ +   +     V   S 
Sbjct: 604  KPFAQTSWWSYSAKIQNKIQSAISQAAQGNSIRYDIPVRFTEEKFITIDFSIKPVFDESG 663

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                 +    ++T +   E      +K Q   I+   +G+A+   D R    N A   L+
Sbjct: 664  EVSYLVVSGIDITERKQAE----DTMKKQLAAIESTIDGIAILQGD-RYLYLNKAHVELF 718

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL- 526
              + ++         I  T    Y  ++       +     ++       +    D    
Sbjct: 719  GYDTDK-------ELIGKTWRELYTPAEIARFERDVFPILIEKGHWGGEAIAQRRDGSTF 771

Query: 527  --EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              E S+    + + +    +++    A++ + +  E  ++ +++K+ F+   S+E R+PL
Sbjct: 772  DEEISLTMTNDGELICVCRDISKRKLAQQEIYKILEREKELNQLKSRFISMTSHEFRTPL 831

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              I     +LK         K+ +++E I         L+++IL ++  +AG +      
Sbjct: 832  AVISSSAGILKEFSQKLDEEKKQKHLECIITYVKHTTQLLDEILLISKAEAGKLAFEPKP 891

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            + L +   ++   +      N I     +  ++ + V D++ L QI   +LSNA+ +S  
Sbjct: 892  LDLVEFCQKLTSEMQLSTQNNTIIFSSNTKTEVIALV-DKKLLRQILINLLSNAVKYSQH 950

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
             S+V           IFS+++ G  IP+     +F  F    + G   G GLGL+IV++ 
Sbjct: 951  NSSVKFDLQITEQSIIFSIEDQGIGIPQADKTQLFEAFHRATNVGSISGTGLGLTIVKNC 1010

Query: 765  INLHGGHVSISSSDEGVTTINCRIPSK 791
            ++LHGG V++ S +   T     IP +
Sbjct: 1011 VDLHGGKVTVVSQEGIGTKFTVIIPLQ 1037



 Score = 54.2 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 96/283 (33%), Gaps = 27/283 (9%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTE 227
            +  E+ E     ++L +       + +SL   V      G I+ AN ++ K     ++ 
Sbjct: 541 NLLLEIQERQRVDQELRHSQQRLHNILNSLFSFVGVISTEGIIIEANEAWLKIFSLTDSS 600

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS---YKIVRVLN 284
             G  F +    S     +   +  IS +A   +    +             + I  V +
Sbjct: 601 VIGKPFAQTSWWSYSAKIQNKIQSAISQAAQGNSIRYDIPVRFTEEKFITIDFSIKPVFD 660

Query: 285 SFGEAGI----AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
             GE        ID+++     D +      + +    IAI   +RYL + N++ VEL+ 
Sbjct: 661 ESGEVSYLVVSGIDITERKQAEDTMKKQLAAIESTIDGIAILQGDRYL-YLNKAHVELFG 719

Query: 341 IDLAFLATNPSNDELL---EFLR-SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            D        +  EL    E  R   +  P  +    W     +  +   T  +      
Sbjct: 720 YDTDKELIGKTWRELYTPAEIARFERDVFPILIEKGHWGGEAIAQRRDGSTFDE------ 773

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                + +T    G  I +  +++ +   + +   +++ + E 
Sbjct: 774 ----EISLTMTNDGELICVCRDISKRKLAQQEIYKILEREKEL 812


>gi|327478670|gb|AEA81980.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 992

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 99/558 (17%), Positives = 201/558 (36%), Gaps = 49/558 (8%)

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
           E + +      L      +   L  G    +  V  +    EA  A+  S+        +
Sbjct: 462 EFRIQHPQRGLLWAEGRASAERLADGTVLWHGFVTEITELMEATRALQKSE--------S 513

Query: 307 HTYEILHNLTVAIAIF---DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
               ++ NL   +      D  R + + +     L     +          + + +RS  
Sbjct: 514 RFRAMVGNLP-GVVYRCRNDGRRRMSYLSEGIERLTGYPASDF--------VGDRVRSYG 564

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVTSN-------PRGGTIW 414
            L    +    +++      + ++ +  + + N  G+T++V   +        P G    
Sbjct: 565 SLIHPDDQAQAEQS-----PAQDSFERIYRITNAEGRTVYVREKARVLRERDDPVGWCDG 619

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              ++T Q   + +     +     ID++ + + +    G I+  N A   ++    + +
Sbjct: 620 FIWDVTDQALAKQEMEERERYLSMLIDNVIDAIIIIDGRGIIETFNHAAEQIFGYRSDEV 679

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G ++  +     R  ++           +   ++ + L           +E  +  + 
Sbjct: 680 -IGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRRNGETFTIELRVSQIS 738

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         V D    +R            + +K+  V  VS+ELR+PLT+I G   L+
Sbjct: 739 HHGERRFIGLVRDITERKR-----------IERMKSELVSIVSHELRTPLTSISGALGLI 787

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               LG  +    Q +     +S  L  LV+D+LD+  + AG M L      L   +   
Sbjct: 788 VGGALGEPSPTMLQMLTIAHQNSLRLGRLVDDLLDMDKLVAGKMTLQLHGHSLVRQMQLA 847

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            ++      ++ + +++     L   +AD  RL Q+ + ++SNA+ FS +G TV L A +
Sbjct: 848 TEANQGYAAKHGVYLQLEPLPTL-QLIADDDRLQQVLANLISNAVKFSPEGGTVSLGAQQ 906

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
                   V++ G  I  +    +F +F         Q+ G GLGL+I +  I    G +
Sbjct: 907 RGAWVRIWVRDQGPGIAPEFHARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRI 966

Query: 773 SISSSDEGVTTINCRIPS 790
              S         C +P 
Sbjct: 967 GFDSEPGHGACFWCELPL 984


>gi|225568759|ref|ZP_03777784.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM
           15053]
 gi|225162258|gb|EEG74877.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM
           15053]
          Length = 1113

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 107/691 (15%), Positives = 255/691 (36%), Gaps = 90/691 (13%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL----VWHRDQAGDILWANIS----- 221
           ++ +Y ++  +    ++L     +   +++++       V HRD +  ++  N +     
Sbjct: 284 VNSLYLDITRSEEDAQRLREQTGLLTSIYETVPCGIIRFVRHRDNSFSLISLNRAVIEIM 343

Query: 222 -YKKN----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            Y        +    V    + E RK+  +            +  +         G+ + 
Sbjct: 344 GYADMETGCRDWHDGVMGAVLKEDRKVLYDIYSMLQDVGDRRDCEYRVRR---MDGSIRW 400

Query: 277 YKIVRVLNSFGEAGIAI------DVSKEITVNDQLTHTYEILH---NLTVAIA---IFDQ 324
                ++      G  I      D ++   +  +L   +E+      ++ A+    + D+
Sbjct: 401 MDGTSMIVGVTPDGDDILQRTVVDATERKILQQRLDREHEMYRVAMEVSSAVMFEYLMDE 460

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLPEQLNWKTWKENIF--- 379
           +R++ +                      +E+ ++ +    +++    +  T  +NI    
Sbjct: 461 DRFISY------------EPRTGQGVIRNEIRDYSKELLKHEIVHPDDVATVIDNICNGR 508

Query: 380 -SVYK------SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
             V++           +  WH  N + +      +   G +     +  ++   ++   +
Sbjct: 509 SEVFEVRCSTPGGRPGEFVWHRVNSRLMTEEGRPDRVVGALNNIHKMKSKLSESSERLRM 568

Query: 433 VKVQGETIDHLSEGVAVFGPD------------GRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   + I+ +   +                  GR    N   R+   +EE        +
Sbjct: 569 NQSALQAINDVYVSIFYVDLQKDSYYAVRLPEAGR---GNTMARTGCYSEELYGYILQDV 625

Query: 481 RN-----IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL----LSDSVLEYSII 531
            +     +A  C R     +       +   F +   S    +E+          + +I 
Sbjct: 626 VDADRGKVADICERDSILRELAQRNGHLEVEFRNRTSSYWIRMEVHLTAAGGGSGKTAIF 685

Query: 532 PLPN--AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
              N  A+         +  +A+ AL E   ++ +A++ K+ F+  +S+++R+P+  I+G
Sbjct: 686 AFRNISAEKQRDLEYYEEEKKAKCALEEAYASVNRANQAKSDFLSRMSHDIRTPMNAIMG 745

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             ++ + S       + +  +  I  S   LL L+N++LD++ +++G M L+   IVL+ 
Sbjct: 746 MAEIARNSTGD--EKRIADCLSKIDLSGRHLLGLINEVLDMSKIESGNMSLSEDVIVLDS 803

Query: 650 LLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L EV + +   + + +    V   +GK  +   D  RL QI   +LSNA+ ++ +G  +
Sbjct: 804 FLREVSEIVRPDVEQKSQHYTVTRKEGKHSAVYGDTVRLKQILINLLSNAVKYTQEGGHI 863

Query: 709 ILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSI 760
            +         R  G F F V+++G  + ++    +F  F         Q +G GLG++I
Sbjct: 864 SVSLEEKLSGERGVGCFEFVVEDDGIGMSKEFIDKLFLPFERAEDSRVSQIQGTGLGMAI 923

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + + +  G + + S  +  T     +  K
Sbjct: 924 TLNLVQMMNGTIQVDSRLDEGTKFTVTVYLK 954


>gi|228988692|ref|ZP_04148778.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771143|gb|EEM19623.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 588

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 146/394 (37%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 306

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 307 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 366

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L      + N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 367 HELRTPLTTMRSYLEALTDGAWQNPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 426 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 484

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 485 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|154252383|ref|YP_001413207.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156333|gb|ABS63550.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 523

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 3/257 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +          +    L    ++   AD+ K+ F+  +S+ELR+PL  I+GF++++ 
Sbjct: 251 AHVLELDETRKQLEKTSAELLVALQSASSADQAKSQFLATMSHELRTPLNAILGFSEIMA 310

Query: 596 TSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               G LN ++ S YV+ I  S   LL+L+ND+LD   VDAG + L+   I L + + + 
Sbjct: 311 AETFGPLNNARYSDYVQDIFKSGKHLLSLINDVLDFTRVDAGELHLHEEDIDLEEAVTDT 370

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + I+ +    NI +       L   +AD +R+ Q+   +LSNA+ F+  G  V + A  
Sbjct: 371 IRMISAQAKAQNIALDYEIAADLPHLIADHRRIRQVLLNLLSNAVKFTPDGGEVHIGALV 430

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +G  +  V + G  I  +       RF  + +    +  G GLGL + +  +  HGG +
Sbjct: 431 ADGAMLLRVTDTGIGIAAENIPLALERFGQIDSDLSRKYEGTGLGLPLAKCLMEHHGGCL 490

Query: 773 SISSSDEGVTTINCRIP 789
            I+S     TT+    P
Sbjct: 491 DIASELGRGTTVTVTFP 507


>gi|119490613|ref|ZP_01623018.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106]
 gi|119453778|gb|EAW34935.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106]
          Length = 663

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 168/396 (42%), Gaps = 42/396 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
                        ++ + + +  F  +G  +    P    L K+    L+   +      
Sbjct: 261 EALRQSEAKNRALLNAIPDLMFRFSREGIFLDFKVPRNEDLLKSLSKYLNKTVY------ 314

Query: 486 TCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFV 543
                + E         ++ S   +E +  +    +       E  I+     + +    
Sbjct: 315 ---DLFPEHVAKQYMEYVLESLRTNEIQIFEYEWFIKGKRHHFEARIVVSGRDEVLAIVR 371

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD+  A+  L +  EA   A++ K+ F+  +S+ELR+PL  IIG++DLL+        
Sbjct: 372 DITDNKLAQIELQQAKEAAEAANQAKSEFLASMSHELRTPLNAIIGYSDLLREDAEDYGY 431

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     +E I +S   LL+L+ DILD++ +++G M L      +  L+NEV+  I   ++
Sbjct: 432 TDFVPDLEQIKSSGLHLLSLIQDILDISKLESGEMNLYLEHFDIATLINEVQAIIQPLVN 491

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------- 715
           +N  + K+     +GS  ADR ++ Q    +LSNA  F+ +G TV LK  R         
Sbjct: 492 QNQNQFKIDCVQPIGSMYADRTKVKQALLNLLSNAAKFTKEG-TVTLKVTRTLFPLQNGQ 550

Query: 716 -------------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGV 754
                                   FSV++ G  +  +  + +F+ FV   +    Q  G 
Sbjct: 551 THSDPKSINHSHHSEKRLSEDWVTFSVEDTGIGMTPEQVEKIFDPFVQADNSTTKQYGGT 610

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGLSI + F  +  G +++ S+ +  +T + ++P+
Sbjct: 611 GLGLSISQRFCEMMMGKITVESTIKVGSTFSIKLPA 646


>gi|149377367|ref|ZP_01895112.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358379|gb|EDM46856.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 1173

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 14/374 (3%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR--LSPGTHIRNIA 484
            +    ++      D+  EGV     D R   +NPA   L     +R  L          
Sbjct: 415 QRALANLRRYQSLFDNAIEGVFQMSLDRRFVTANPAMAKLMGYTSSRELLDLDPDALETC 474

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
               R      G       +   +    +  G     + S+          A    T ++
Sbjct: 475 FADERVRRWVIGQLESRGTVKGIEARYYTRSGEERWATISLHTVYTPDGDPAHLEGTCID 534

Query: 545 VTDSVRAERALTEK------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            T+  + +R   E+       E  R + E K+ F+ ++S+E+R+PL  IIG+ + L    
Sbjct: 535 ATERHQRQRIEREREQERLEKELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLDPD 594

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L     ++    E +  S   LL+L+NDILD + +DA  + ++  ++ L +LL+E++   
Sbjct: 595 L--TEREKHTSAETVVRSGRHLLDLINDILDHSKIDANKLDVDIVSVNLPELLDEIRAFF 652

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
           A +  E  +   +I +  L      D  R  QI   +  NA+ F+ KGS  + ++  R  
Sbjct: 653 APRAREKGLAFHIICEYPLPEKISTDPTRFRQIIINLCGNALKFTEKGSISLNVRCDRQR 712

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
              +  V + G  +  +    +F+ F   +     Q  G GLGLSI      L GG++S+
Sbjct: 713 QALVARVVDTGIGMKPEQLGRLFDPFAQGSAAIARQYGGTGLGLSISRRLAELLGGNISV 772

Query: 775 SSSDEGVTTINCRI 788
           +S+    +     I
Sbjct: 773 TSTYGEGSEFELSI 786


>gi|303246750|ref|ZP_07333027.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491767|gb|EFL51647.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 939

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 159/385 (41%), Gaps = 25/385 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--PDGRIKLSNPAFRSLWKTEENRLSP 476
           +  + + E +    + +    ++  +EG+        G +   N  F  LW   EN  + 
Sbjct: 285 VAARREAEDRQQRALALHRAILESTAEGMVCVSWPLPGDVLAHNRRFLELWGLAENWAAL 344

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSDSVLEYSIIPLPN 535
               R          +     +   A   +   + + L+ T L L     LE    P+  
Sbjct: 345 PESER-----ARLLLDNLADPEAARAGYAALMGDGERLETTVLALRDGRFLERRSGPIRQ 399

Query: 536 AQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            ++    + ++V+VT+ +R      ++     +A + K +F+  +S+E+R+PL  +IG T
Sbjct: 400 GRSTIGRVFSYVDVTEEIRRRDRTEQQKTMAEEASKAKGAFLAVMSHEIRTPLNVVIGLT 459

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           + L     G    +Q  +   I  S+  LL +VND+LD + ++AG + L      + +L+
Sbjct: 460 EELL---AGEATGEQRDHFRIIQQSAAHLLGVVNDVLDFSKIEAGKLVLERIDFNVRELV 516

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             V    A +     +      D  + +F+  D  RL Q+   +L NA+ F+  GS V L
Sbjct: 517 AGVADVFAREARVKGLDFSTRVDDAVPAFLRGDPGRLRQVLLNLLGNAVKFTESGS-VSL 575

Query: 711 KAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
             A       D       V + G  I  D  + +F  F   A    RR  G GLGL+I +
Sbjct: 576 DVAPAASGPPDRVGIAIRVADTGIGIAPDRREGIFEDFQQGAGAIARRFGGTGLGLAISK 635

Query: 763 SFINLHGGHVSISSSDEGVTTINCR 787
             +   GG +S+ ++  G +   C 
Sbjct: 636 GIVTRMGGTISVEANPGGGSVFTCT 660



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 84/272 (30%), Gaps = 49/272 (18%)

Query: 185 CKKLSNHISVFKVLFDSLD-------FLVWHRDQAGDILWA-NISYKKNTETEG--IVFQ 234
            + + + +   +   +++          V   D  G ++ A N    +  ET       +
Sbjct: 194 HRLVLSPVDTLRRGLEAVQDGQLGHSLPVSSSDAMGRMVLAFNAMSARLKETSDSLAKSR 253

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
             I ESR+L    +++R    +                           N    A +A  
Sbjct: 254 DEIEESRRLLARRVEERTAELAK-------------------------TNDKLTAEVAAR 288

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
              E      L     IL +    +    +     +  HNR F+ELW +   +       
Sbjct: 289 REAEDRQQRALALHRAILESTAEGMVCVSWPLPGDVLAHNRRFLELWGLAENW------- 341

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPRG- 410
             L E  R+   L    + +  +    ++    E  + T   L +G+ L        +G 
Sbjct: 342 AALPESERARLLLDNLADPEAARAGYAALMGDGERLETTVLALRDGRFLERRSGPIRQGR 401

Query: 411 ---GTIWMFENLTVQVDLETKYNTLVKVQGET 439
              G ++ + ++T ++    +      +  E 
Sbjct: 402 STIGRVFSYVDVTEEIRRRDRTEQQKTMAEEA 433


>gi|119944301|ref|YP_941981.1| hybrid sensory histidine kinase BarA [Psychromonas ingrahamii 37]
 gi|119862905|gb|ABM02382.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 926

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGF   LLKT     L + Q  Y++ 
Sbjct: 276 ELDITKKKAQQAALVKSEFLANMSHELRTPLNGVIGFARQLLKTQ----LTTNQIDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG   L +    L D ++E    +A   HE N+ + +I
Sbjct: 332 IERSAGNLLKIINDILDFSKLEAGKFTLEHIPFDLRDCIDETMHLLAPSAHEKNLELSLI 391

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSV 723
            D ++      D  RL QI + ++ NA+ F+ KG  + ++  R                +
Sbjct: 392 VDPEVPYEVFGDAMRLQQILTNLIGNAIKFTEKGD-IKIQIQRIEEQTNRDNKVTLKIMI 450

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++G  I +     +F  F         Q  G GLGL I +  +    G + + S  E  
Sbjct: 451 SDSGIGISKKQQAQLFKAFGQADTSITRQYGGTGLGLVITQKLVKEMQGRIELISIPEQG 510

Query: 782 TTINCRI 788
           +T    I
Sbjct: 511 STFGFTI 517


>gi|295106963|emb|CBL04506.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 748

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 15/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  RAERA  E     ++A   K  F+  +S+E+R+P+  I+G T +   S     + K 
Sbjct: 339 EKDRAERAFAE----AQQASLAKTEFLSRMSHEIRTPMNGIMGMTAIALESIGD--DGKV 392

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +E ++ SS  LL+L+NDILD++ +++G +++      L+  +  +     T+  E N
Sbjct: 393 RTCLEKVTLSSEHLLSLINDILDMSKIESGKVEIKNEPFDLSTFIGSLAAVFRTQASERN 452

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNG--DF 719
           +    + +G++    V D  RL Q+   ++ NA  F+ +G +V L+  R    ++G    
Sbjct: 453 VAFDTVVEGEVPGHVVGDPLRLNQVVYNLMGNAFKFTPEGGSVTLRIERLADAEDGCVWL 512

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F+V + G  I  +    +F  F         +  G GLGL+I + F+ L GG + ++S 
Sbjct: 513 RFAVDDTGCGIEPEHLDKIFASFEQGDASVARKHGGTGLGLAITKRFVELMGGRIRVASV 572

Query: 778 DEGVTTINCRIPS 790
               ++    +P 
Sbjct: 573 VGHGSSFAVDVPL 585


>gi|327383867|gb|AEA55343.1| Two-component sensor histidine kinase [Lactobacillus casei LC2W]
 gi|327387048|gb|AEA58522.1| Two-component sensor histidine kinase [Lactobacillus casei BD-II]
          Length = 636

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 151/406 (37%), Gaps = 45/406 (11%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   + +   + +    + H+++GV      G + + N    +   
Sbjct: 240 GQLAVAVNNLSVRVEEAQEASEAERRRLDSVLAHMTDGVIATDRRGNVIIINQTALNFLN 299

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T+   +  G  I  +      Y       DL         D  + L   L L     +++
Sbjct: 300 TKNEDV-IGVSILKLLNIAKDY----TLRDLLEHQTELLLDFSEQLDHELILR----VDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 351 SLIQRETGFISGLVAVLHDVTEQQ-----------KIDRNRKEFVSNVSHELRTPLTSVR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++      +  ++ ++ND+L L+ +D+G  K N  T+ LN
Sbjct: 400 SYIEALSDGAWKD-PKLAPRFLNVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLN 458

Query: 649 DLLNEVKQSI---------------------ATKMHENNIRIKVISDGKLGSFVADRQRL 687
           +  N V                              +    IK     +      D  + 
Sbjct: 459 EFFNYVLDRFDMMLKTDNEHTGEAKTAQPLPQPDGQKKRYSIKREITDQDLWVEIDTDKF 518

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
           +Q+   I++NA+ +S  G T+  +  + +   I S+ + G  IP      +F+RF     
Sbjct: 519 MQVIDNIMNNAIKYSPDGGTITARLFQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDK 578

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++ G GLGL+I +  +    G + + S +   +T    +P +
Sbjct: 579 ARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGRGSTFYISLPYE 624


>gi|117923856|ref|YP_864473.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607612|gb|ABK43067.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1302

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 103/604 (17%), Positives = 212/604 (35%), Gaps = 57/604 (9%)

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALE---KNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
              + + ES  +  + + +  I     +         +  L       ++  +  N   +
Sbjct: 342 APLRDLTESAHMLAKSLHEGSIPHQNRQDEVGTLARAIHLLLQRLQHIHQRTQRFNEQLQ 401

Query: 289 AGIAIDVS---KEITVNDQLTHTYEILHNLT-VAIAIFDQNRYLQFHNRSFVELW---EI 341
             +A   +   + I + D+       + ++  +    +D          +F++L      
Sbjct: 402 TEVAQRTTALQETIALADERRSLLAEVQSMARIGGCAWDPTHDQLSVTEAFLQLTNSYGA 461

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
               L        + +  R  + L E       K ++ +   S   H   W       L 
Sbjct: 462 PPTTLQDLLDLYGIEDRERLQHML-EIALQSGLKGDMVA---SLGGHNQLWLR---TLLQ 514

Query: 402 VIVTSNPRGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            I           + +++T +         E + NT +    E      + +      G 
Sbjct: 515 PIRQGPATIKIHIVIQDITREHLIQEAHTREERRNTWLLKLNEVAYASGDALMELALQGA 574

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           I LS    ++ +   ++ L+     R   A       +      FA    +F  +   L 
Sbjct: 575 ITLSASP-QAFFIWMDSSLNHICQERLYPAPRDPAAVDRYRPARFAPSQQAFISKESVLH 633

Query: 516 G----------TLELLSDSVLEYSI------IPLPNAQTMLTFVNVTDSVRA------ER 553
                       L L  D  +   +       P  N              R       + 
Sbjct: 634 HAQAATDQPALVLPLFEDRQVIALLGVLGASTPYDNRDIQHLHYFAQGLWRVLQRRRDQE 693

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            + +     ++A+ +K  F+ ++S+E+R+P+  I+GFT+L   S      +   ++++ I
Sbjct: 694 MVKQATAEAQRANAVKGRFLANMSHEIRTPMNAIMGFTEL---SLTQHPPAPHDRHLQAI 750

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S  LL L+ND+LD + +DA  + L        + L ++ Q +A +     +      
Sbjct: 751 RTASQTLLALLNDVLDFSKIDAEQLALEQIPFSPTEQLQQIAQMLAPQAQAKGLHFHTFQ 810

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGD--FIFSVKNNG 727
            G + + +  D  RL Q+   ++SNA+ F+ +G  V+     +    G     F V ++G
Sbjct: 811 QGSMPTLLLGDALRLRQVLINLVSNAIKFTHQGKVVLGMYGNEPTPEGRCLLRFEVIDSG 870

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I     + +F  FV       R   G GLGL+I +  ++L GG + + S+    +  +
Sbjct: 871 IGIEASQQERLFQPFVQGDLSTTRTYGGSGLGLAISKRLVHLMGGEMQLESTLGAGSKFS 930

Query: 786 CRIP 789
           C +P
Sbjct: 931 CLLP 934


>gi|73539168|ref|YP_299535.1| PAS [Ralstonia eutropha JMP134]
 gi|72122505|gb|AAZ64691.1| PAS [Ralstonia eutropha JMP134]
          Length = 1060

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 97/484 (20%), Positives = 180/484 (37%), Gaps = 43/484 (8%)

Query: 337 ELWEIDLAFLATNPSNDELLEFL---RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +L E+  A +        + +     R    +     +      +     + E ++ ++H
Sbjct: 263 QLTELAAALIDARDGETRVFDHYLDYRGRRVIGVAHWFPDTAMGVIVELDTDEAYR-SFH 321

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           L     + +   +      I +   LT        +     +       ++  G+A   P
Sbjct: 322 LARQAIIALTALA------ICLILALTALHWRSRREMRQNAERWQAFRKNVPAGLAYMSP 375

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-- 510
            GR+ ++N  +        + L        +         E    D+     T  D+   
Sbjct: 376 GGRVDMANDIYCEFAGLPLHDLLGRNAWTALPDRRVAGICERGHADVLRTGQTHVDEHTL 435

Query: 511 --RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE---------------- 552
             R   Q    +    V       +    T++T ++  +  R                  
Sbjct: 436 NVRAHGQRVYRVARFPVRSRHDAVIMGVGTVVTDISEQERTRQALENLASTLEWKVAERT 495

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E+   A   K+ F+ ++S+E+R+PL  I G T L   +     + +Q QY+  
Sbjct: 496 RELMEARESAEAAARAKSQFLANMSHEIRTPLNGISGMTHL---AIGEPDSGRQGQYLAR 552

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L  +VNDILD + ++AG++ ++ ++  L  LL+ V      ++ +  + +++ 
Sbjct: 553 IEESCQHLQRIVNDILDFSKMEAGMLAVDAASFPLARLLDHVLSLFREQVRKKGLVLQME 612

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
            D  L    + D QR+ QI   +L NA+ F+  G  + L+    N D       F V + 
Sbjct: 613 VDPALPLHVIGDSQRIGQILINLLGNALKFTDAGE-IRLRVRACNADDDTVAVRFEVSDT 671

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ED    +F+ F        RR  G GLGL+I +    L GG +++ S     +  
Sbjct: 672 GIGIAEDALLVLFSPFHQADSSAARRFEGTGLGLAISKRLAELMGGRITVQSQAGVGSLF 731

Query: 785 NCRI 788
              I
Sbjct: 732 TLEI 735


>gi|325292003|ref|YP_004277867.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325059856|gb|ADY63547.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 1248

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 114/630 (18%), Positives = 234/630 (37%), Gaps = 27/630 (4%)

Query: 179  AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
            A      +++   ++    + D             D    + + +   +    V Q  + 
Sbjct: 624  AGEQAAFREIGRTLAPLDAVSDEGP------KAEEDAPSTDPAAQHIQDDIDAVTQVDLP 677

Query: 239  ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKE 298
               +      +         +    E      +      +I     +F E   A D++  
Sbjct: 678  PVLEEDVNAAEPAEEDDLFADYVRGER-PAATNKPADEIQIEEKTVAFNEVVPAADIAAA 736

Query: 299  IT---VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDE 354
            +    +      + E L  + VA+ +   +  L   N  F+ L     L  L      + 
Sbjct: 737  MVSPPLRPADALSAETLDQMPVALLVHAGD-RLIHANPDFLRLTGYGSLDELDEVGGLEA 795

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYK-SSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
            LL+  +    +P+             +    +      W       L ++     +    
Sbjct: 796  LLQR-QELEDMPDNEGGMVVVSAENDIIPVKARLQSIRWEDTKALMLSLVPLEEKQAPVT 854

Query: 414  WMFENLTVQVDLETK------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
               EN +                  V+     ++  ++GV + G DG I+  N +  +L+
Sbjct: 855  AANENTSAAETANADAGSVSVLQGEVEELHSILETATDGVVLLGDDGEIRSLNRSASALF 914

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              +   ++ G     + A  S+         L    + S  ++ + + G         L 
Sbjct: 915  NYDNGEIA-GKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGREVIGREASGGFLPLF 973

Query: 528  YSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
             +I  L ++        ++T   R E  L     A   A+  K  F+  VS+E+R+PL  
Sbjct: 974  MTIGRLKSSHGYCVVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNA 1033

Query: 587  IIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIGF D++ T + G + + +  +Y   I  S   +L++VND+LD++ ++AG M +++  +
Sbjct: 1034 IIGFADMMATERFGPIGHPRYVEYSNDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAV 1093

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             LN+ + E    +  + +   + I+      +   VAD + + QI   ILSNA+ F+  G
Sbjct: 1094 PLNETVAEAVSLVQPQANNQRVIIRTALSQSVPQIVADLRSIKQIVLNILSNAIRFTPSG 1153

Query: 706  STVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIV 761
              +++  A + NG     +++ G  +     +     F   A  G+R    G GLGL + 
Sbjct: 1154 GQIVVSTAYEANGSVALRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLT 1213

Query: 762  ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++ ++ +  + SI+S+    T +    PS+
Sbjct: 1214 KAMVDANRANFSITSTPNEGTLVEITFPSQ 1243


>gi|298246762|ref|ZP_06970567.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549421|gb|EFH83287.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 863

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 125/707 (17%), Positives = 249/707 (35%), Gaps = 74/707 (10%)

Query: 118 WLKFHHYIK-LSKATEKL-RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
           W       + L  A  +  R E   F+     + D ++ I   ++       +       
Sbjct: 184 WSSDSVVQEHLRTAIARAARGETVRFEAKIHPRTDLSLDILMTITA------LRDASQQV 237

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ- 234
             L        +  +     +VL D++  LVW     G   ++N  +   T+     +Q 
Sbjct: 238 EYLICAGRDITERKHAEDELRVLIDAIPQLVWMARPDGSREYSNRRWCDYTDMTSEQYQG 297

Query: 235 ----KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV------RVLN 284
               +AI    +    E+ +R + +    +     +     G  + + +           
Sbjct: 298 DGWLQAIHPDDQQHVLEVWQRAVQTDGPYETEL-RLRQGTTGAYRWFLVRAMQHKDDQGT 356

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWE 340
           +    G   D+  +     +L  + E    L   +         +  L + N+   +L +
Sbjct: 357 TLKWFGTCTDIDDQKQAEQRLKASEENWRVLAETVPQLVWTARPDGGLDYVNQRCRDLAQ 416

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN---G 397
            D   L      D   +F+   +    +     W+      + + E+ +    L +   G
Sbjct: 417 TDAEHLQG----DGWSQFVHPEDL---ERVLALWRH----AFATGESFESEHRLKDCRTG 465

Query: 398 QTLHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
                +V + P     G T+  F    ++  +  +E       +     +D    G+  F
Sbjct: 466 AYRWFLVRAMPMRDETGQTVKWFGTGTDIEDRKRIEEALRQSQERASTLMDSNIIGI--F 523

Query: 451 GPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI---ITS 506
             +G +I  +N     +       L  G  I  ++ T   Y   +       A    +T 
Sbjct: 524 ATEGEQIVDANDTLLRMTGYTREDLRAG-RINWMSMTAPEYLARTRQAQQELATQQYLTP 582

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           ++ E     G            S +P+   +  L   +         A    N A ++ +
Sbjct: 583 YEKEYVCKDG------------SRLPVLVGRVALQHHSSQAI-----AFVLDNSARKELE 625

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K++F+   S+EL++PLT +     LL            +  +  +      +  LV +
Sbjct: 626 QRKDAFISTASHELKTPLTAMKLQAILLHRQLAKQGLQASAPTLSSMETQIIKVTRLVEE 685

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ + A  ++    T+ L+ LL+EV  ++      + I   V+      S V D+ R
Sbjct: 686 LLDVSKIQADRLEYLQETVGLDALLHEVVDTMQPIHATHTI---VVRGAAPCSLVGDKDR 742

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+F  ++SNA+ +S    TV +  +         V ++G  IP   C  +F RF    
Sbjct: 743 LGQVFINLISNAIKYSPGAETVEIDLSASEETVAVRVHDHGLGIPRAQCDKIFERFYRAT 802

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              Q+   G+G+GL IV   +  HGG +++ S     +T    +P K
Sbjct: 803 DPNQKAIPGLGMGLYIVAEIVRHHGGTLTVESEVGKGSTFTVTLPCK 849



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 113/387 (29%), Gaps = 35/387 (9%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
                + ++L   V+  D    I++AN S +  + T              L         
Sbjct: 16  ETLLHMLETLPDAVFVVDDTEAIIYANASARTLSGTTREEACGTSLWCGALHLVSPSLYQ 75

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----T 308
               A E      V+ +    N+   +       G A    +  + + +   L+      
Sbjct: 76  AVHKAKETREPTEVTYVSPATNRWLHVSLSPTDEGLALFFHEQLEPLPLQHALSQNEHLY 135

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNR-SFVEL---WEI----DLAFLATNPSNDELLEFLR 360
            ++L ++   + I      +   N+ S  +    WE+     L  L    S+  + E LR
Sbjct: 136 RDLLDSVGDGVMIVTPEGLVLDINQLSLADAHLQWEVVVGTPLTDLPAWSSDSVVQEHLR 195

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           +A         +  +              D           +   S      I    ++T
Sbjct: 196 TA-------IARAARGETVRFEAKIHPRTDLSLDILMTITALRDASQQVEYLICAGRDIT 248

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   E +   L       ID + + V +  PDG  + SN  +         +      +
Sbjct: 249 ERKHAEDELRVL-------IDAIPQLVWMARPDGSREYSNRRWCDYTDMTSEQYQGDGWL 301

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--- 537
           + I     ++  E   W         ++ E +  QGT    +        +   + Q   
Sbjct: 302 QAIHPDDQQHVLE--VWQRAVQTDGPYETELRLRQGT--TGAYRWFLVRAMQHKDDQGTT 357

Query: 538 --TMLTFVNVTDSVRAERALTEKNEAL 562
                T  ++ D  +AE+ L    E  
Sbjct: 358 LKWFGTCTDIDDQKQAEQRLKASEENW 384


>gi|229551250|ref|ZP_04439975.1| histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|229315413|gb|EEN81386.1| histidine kinase [Lactobacillus rhamnosus LMS2-1]
          Length = 636

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 150/406 (36%), Gaps = 45/406 (11%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   + +   + +    + H+++GV      G + + N    S   
Sbjct: 240 GQLAVAVNNLSVRVEEAQEASEAERRRLDSVLAHMTDGVIATDRRGNVIIINQTALSFLN 299

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T+   +  G  I  +      Y       DL         D  + L   L L     +++
Sbjct: 300 TKNEDV-IGVSILKLLNIAKDY----TLRDLLEHQTELLLDFSEQLDHDLILR----VDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 351 SLIQRETGFISGLVAVLHDVTEQQ-----------KIDRDRKEFVSNVSHELRTPLTSVR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             Q++      +  ++ ++ND+L L+ +D+G  K N  T+ LN
Sbjct: 400 SYIEALSDGAWKD-PKLAPQFLNVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLN 458

Query: 649 DLLNEVKQSI---------------------ATKMHENNIRIKVISDGKLGSFVADRQRL 687
           +  N V                              +    IK     +      D  + 
Sbjct: 459 EFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQKKRYSIKREITHEDLWVEIDTDKF 518

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
           +Q+   I++NA+ +S  G  +  +  + +   I S+ + G  IP      +F+RF     
Sbjct: 519 MQVIDNIMNNAIKYSPDGGVITARLFQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDK 578

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++ G GLGL+I +  +    G + + S +   +T    +P +
Sbjct: 579 ARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGRGSTFYISLPYE 624


>gi|254414687|ref|ZP_05028452.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178535|gb|EDX73534.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 637

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 156/396 (39%), Gaps = 27/396 (6%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   ++ L    ++G  +      + L NP  R
Sbjct: 222 GELISSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLLDTTLNVILVNPTAR 281

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++  + + L     + ++    +            A   T+ + E +  + TL   +  
Sbjct: 282 RIFGWDGHTLVGENVLHHLPTAVTLELTRPLYQ--IAGGETAAEREGEEFRITLTEPTLR 339

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +   +  + +           +S++      +      + +E K+ F+ +VS+ELR+PL
Sbjct: 340 TVRILLTRVFD--------QYRESIKGIAMTVQDITREVELNEAKSQFISNVSHELRTPL 391

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  F + L          ++ +++E  +  +  L  LVND+LDL+ ++      ++  
Sbjct: 392 FNIKSFIETLHEYGEDLSEVERQEFLETANRETDRLTRLVNDVLDLSRLETSCRIYHFEP 451

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + +   + +  ++      +  I +      KL   +     LLQ+F  ++ NA+ F+  
Sbjct: 452 VDIAGPVEQTLRTYQLNARDKGIELVQEISPKLPPVLGHYDLLLQVFDNLVGNALKFTES 511

Query: 705 GSTVILKAARDNG-----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-R 752
           G  V+++A                     + + G  I  +  +++F+RF    +R     
Sbjct: 512 GGRVVIRAYPLEANPNPNHPDEIPQVRVEISDTGIGIDWEDQENIFDRFFRVENRVHTLE 571

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGLSIV + +  H   V + S     TT    +
Sbjct: 572 GTGLGLSIVRNIVEKHHSRVYLVSEVGIGTTFWFNL 607


>gi|157413903|ref|YP_001484769.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388478|gb|ABV51183.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 688

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 157/390 (40%), Gaps = 47/390 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  + L++ E   L     +  I   
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKNFLNEIPEI 347

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            S   +     +         DD R SL     TL ++  SVL+ + + L          
Sbjct: 348 LSNDLHT--NVESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAV----- 400

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  +N F+ +VS+ELR+PL NI  + + L   K    +
Sbjct: 401 -TIQDLTREVEL----------NAAQNRFISNVSHELRTPLFNIKSYVETLHDLKDQLSD 449

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G + +    + +   + +  ++      
Sbjct: 450 EEQIEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLDQMDIKPAIEQTLRNYRLNAT 508

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           E N+ +    +  +   + +   LLQ+F  +L N + FS K S++I++A           
Sbjct: 509 EKNVTLAHDIEETIPLILGNFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFP 568

Query: 718 ------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGL 758
                                  + + GS I +   + +F+RF    +     +G GLGL
Sbjct: 569 PSIKNDGAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSVHTEQGTGLGL 628

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           SIV   I  HGG + ++S     TT    +
Sbjct: 629 SIVRGIIEKHGGEIRMASELGVGTTFWFDL 658



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D    +   N +   L+  +  FL      +
Sbjct: 283 DEANIEELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKNFLN 342

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           E+ E L +        +  T  E+I +  K  +  + +   P  +TL +++ S       
Sbjct: 343 EIPEILSN--------DLHTNVESILNREKEKDDLRFSLGEP-ARTLRIVLQSVLDTNKV 393

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    N  +
Sbjct: 394 ELKGIAVTIQDLTREVELNAAQNRFI 419


>gi|167577648|ref|ZP_02370522.1| sensory box histidine kinase [Burkholderia thailandensis TXDOH]
          Length = 709

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 107/639 (16%), Positives = 234/639 (36%), Gaps = 54/639 (8%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVL-----FDSLDFLVWHRDQAGDILWANISY 222
           +         LA      K+  + ++    L     FD+   +V     AG I      +
Sbjct: 98  VRDDPVQQRRLAALRTLLKRKQDELAATIALRKSEGFDAAQAIV--SSDAGKI------F 149

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                T     +  + +  +  +E  + R     A+       + TL    +  Y + R+
Sbjct: 150 MDRARTMVNDMEATVQQQLRALRE--RARATRDVAIAVGLASGLLTLVVCVSFGYVMRRL 207

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           L     A      S ++    +L H    L ++   +   D +  + F NR   E+  + 
Sbjct: 208 LLVESAA------SDDLFAQRELLHV--TLASIGDGVIATDVDGRITFFNRVAEEMTALA 259

Query: 343 LAFLATNPSNDEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
              +   P    L      +   +         ++ I ++          +    G  L 
Sbjct: 260 ADAVVGQPIEQVLTFRHALTQRVIDNPARVAVERKRIAAL-----PVHTRFVGRGGGELP 314

Query: 402 VIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           V   + P         G + +  +++ +           +     ++     + +   +G
Sbjct: 315 VDGNAAPTFDAKGKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPNAMIMVNREG 367

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +I L N      +      +  G  I  +     R  + +     F           + L
Sbjct: 368 KIVLVNSQAEKFFDYVRGDM-IGQGIDMLVPERFRAGHATHRGAFFGKPDARPMGAGRDL 426

Query: 515 QGTLELLSDSVLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            G     S+  +E  + P+     A  + +  ++T   RAE  L  ++E L ++++    
Sbjct: 427 FGLRRDGSEFPVEIGLNPITTSEGAFVLCSITDITARKRAEHELRRRSEELARSNQDLEQ 486

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F    S++L+ PL  + G   LL+    G L+++  +++ +    +T + +L++D+L  +
Sbjct: 487 FAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYS 546

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            V  G ++     +    +L+E  ++++  + E+  +I      +L        +L+ +F
Sbjct: 547 RV--GRLEDARQPVDCERVLDEALRNLSAAIRESGAQIT---HDRLPIVHGIAAQLVLLF 601

Query: 692 SKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             ++ NA+ F SK     + L+A   +  ++F V++NG  I     + +F  F     R 
Sbjct: 602 QNLIGNAIKFRSKDRIARIHLEADTRDDAWVFRVRDNGIGIDPQYFERIFLIFQRLHTRR 661

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  G GLGL++ +  +  HGG + + S     TT +  +
Sbjct: 662 EYPGTGLGLALCKRIVEHHGGRIVVESEPGRGTTFSFAL 700


>gi|261253472|ref|ZP_05946045.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891]
 gi|260936863|gb|EEX92852.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891]
          Length = 1037

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 169/392 (43%), Gaps = 23/392 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E + ++   E     + +     +D  ++G+      G+I   N A + ++   E   
Sbjct: 351 LNEEVKLKQQSEVSQKLVSQKLEAILDTAADGIITINDKGKILSFNQAAQRMFGYLETE- 409

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--------L 526
           + G  I  +        ++    D + A   S     K+  G L     ++        +
Sbjct: 410 AIGMPIEKLMPKKYASMHQV-FIDRYRATGRSKIIGVKTKDGRLGREFQAINKAGELFPI 468

Query: 527 EYSIIPLPNAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             SI  +     ++      +++   +AE AL    E   +A   K+ F+  +S+E+R+P
Sbjct: 469 LLSIAQVETNDGVIYSGLVKDISQQKQAENALIAAKEEAEQAARSKSEFLAVMSHEIRTP 528

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  IIG           +LN+ QS        S+  LL L+NDILD + +DA  ++L   
Sbjct: 529 MNGIIGML---DLLLENNLNTSQSHQAYLAHTSALSLLGLLNDILDFSKIDADKLELERQ 585

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L  +L +  + +A  +   N+ I +     +    +AD  R+ QIFS ++SNA+ F+
Sbjct: 586 HFNLRHMLGDFAEQMAASLTNPNVEIILDMVQVEHSMILADSTRIRQIFSNLVSNALKFT 645

Query: 703 SKGS-TVILKAAR-DNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            +G   + ++    D   +    S+K++G  IP+D   S+F++F        RR  G GL
Sbjct: 646 EQGEVVITVRLEENDENTWQLNASIKDSGIGIPQDRLNSLFDKFSQVDASTTRRYGGTGL 705

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+IV+       G V++SS     +  +  I
Sbjct: 706 GLAIVKRLCQAMKGSVTVSSEAGKGSEFSFHI 737


>gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 473

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 114/246 (46%), Gaps = 5/246 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +    L ++   L++ D  +  FV  VS+ELR+PL+ I G+T+ +    +     +   
Sbjct: 231 NKLAAELEKRIAELKRMDAARRDFVAAVSHELRTPLSIIQGYTEAILDGMVTP--EEMKL 288

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I      L  L +++LDL  ++ G +K+    + L ++ ++V          + + 
Sbjct: 289 YLDTIREEVERLKRLTDELLDLRRLETGAIKIRQEKLDLGEIASQVAARFQAAPEASKLH 348

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
             V    +    + D+ RL Q+   +L NA  F+  G +V L+      + + +V++ G 
Sbjct: 349 FHVEVSPR-SLVLGDKDRLEQVIINLLDNAFRFTPAGGSVTLRVESAPEEVVLTVQDTGP 407

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP +    ++ +F  +         G GLGL+IV+  + LHGG V + S     +T   
Sbjct: 408 GIPPEELPYIWEKFYRSDKARARTTGGSGLGLAIVKQIVELHGGRVEVQSRPGEGSTFKV 467

Query: 787 RIPSKE 792
            +P+ +
Sbjct: 468 TLPAAK 473


>gi|326202280|ref|ZP_08192149.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987398|gb|EGD48225.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 620

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 158/371 (42%), Gaps = 31/371 (8%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSR------ 489
           + I  +S+ V +    G+I   N + + L     + L     I  +     CS       
Sbjct: 232 QIISKISDMVIITDTKGKIVEVNDSLKELSGYCYSELLE-KDISTLFSPKICSDKASVKV 290

Query: 490 -----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                   E+    +  +I   + +++ ++ GT  +L D            +  +     
Sbjct: 291 SGYKILTRENHTIPVNMSISQIYSEDKTTIIGTAYVLQD-----------ISNVLSLAEK 339

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLG 600
           V +     +   + N+ L + D++K  F+ +VS+ELR+PL  ++    L    +  +   
Sbjct: 340 VAEEAAVTKVANQANDKLIELDKLKTDFLCNVSHELRTPLNLMVSSLKLSALKISQNHGV 399

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                  ++   ++ +   L  ++N+I+D+  +DAG + LN +   + D++ E   S+A+
Sbjct: 400 LDTVMMHKHFHIMNQNCFRLTRIINNIIDITKIDAGSLDLNLTNNNIVDVVEETVLSVAS 459

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +  I +   +D +      D  ++ +I   ++SNA+ F+S G  + +       +  
Sbjct: 460 HIKDKGITLIFDTDVEEKFLACDPDQIQRILLNLISNAVKFNSSGREIYVSIEDCTENIK 519

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SVK+NG  I  +    +F+RF+        Q  G G+GL+I +  + LH G +++ S  
Sbjct: 520 ISVKDNGIGISLENQPFIFDRFIQVDKSLTRQHEGSGMGLTITKYLVELHKGTITLESEP 579

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 580 TKGSTFTITLP 590


>gi|186685533|ref|YP_001868729.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467985|gb|ACC83786.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 937

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 128/298 (42%), Gaps = 11/298 (3%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAE-RAL 555
           +L   +     +E   L  +   ++  + + ++ I   N Q   T   +   V      L
Sbjct: 394 ELNQQVEIPSVNELGRLAQSFNRMAQQLRDSFTTIEQTNQQLAKTNEELESRVEERTHEL 453

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E       A+  K+ F+ ++S+ELR+PL  I+G+  +L  +     + KQ + ++ I  
Sbjct: 454 KEAKLTADAANHAKSDFLANMSHELRTPLNGILGYAQILARTAS---DEKQQRGIDIIYQ 510

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             + LL L+NDILDL+ ++AG ++L      L   L  V +    K  + +I        
Sbjct: 511 CGSHLLTLINDILDLSKIEAGKLELQLVPFYLPAFLQSVVEICRIKAEQKSIEFIYQPPE 570

Query: 676 KLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKNNGSSIP 731
                 VAD +RL Q+   +L NA+ F+ KGS V  +      D  +  F +++ G  + 
Sbjct: 571 NSAMGIVADEKRLRQVLINLLGNAIKFTDKGS-VTFRVEVLLGDITNLRFYIQDTGIGMS 629

Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               + +F  F      + Q  G GLGL+I + F+ L    + + S     +     I
Sbjct: 630 PQQLEKIFLPFEQVGDSKRQSEGTGLGLAISQRFVELMASKIQVESQLGVGSKFFFNI 687


>gi|153872721|ref|ZP_02001529.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152070813|gb|EDN68471.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 677

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 165/398 (41%), Gaps = 36/398 (9%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHL--SEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           ++ EN+   V +      L  +Q E I  +  S G+AV   + R            K ++
Sbjct: 5   FLHENIIKGVIVLGSLEMLTPIQQEFIHQIMPSIGIAVNSVEAR-----------TKMQQ 53

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                      + +  +   + ++     +  + S  +E +S    L   +D  LE    
Sbjct: 54  LLQKTQVQAEELQSQQAELQHSNEELQSQSEELQSQTEELQSQTEELRQTNDE-LEERTQ 112

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            L   Q            + ++A+  K   L  A   K+ F+ ++S+ELR+PL +++  +
Sbjct: 113 DLE-RQKNDVREKNLALEKTQQAIEAKANELELASRYKSEFLANMSHELRTPLNSLLILS 171

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  +K G+L  KQ +Y + I ++ + LL L+NDILDL+ V+AG ++++   I L D +
Sbjct: 172 QLLTNNKQGNLTDKQLEYAQTIHSAGSDLLKLINDILDLSKVEAGKIEIHLEEISLTDFI 231

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +KQ          +   +     +  +   D QRL QI + +LSNA  F+ +G   I+
Sbjct: 232 EIIKQKFCHVAENKELAFDITVANDVPATLNTDEQRLNQIINNLLSNAFKFTHQGGIEII 291

Query: 711 KAARDNGDFI------------------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQ 750
             +                         FSV + G  IP+D  + +F  F         +
Sbjct: 292 VQSITEKSLQAPVSTSLITDLQKGALIAFSVSDTGIGIPKDKQQVIFEAFQQADGTTSRR 351

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGLSI      L GG + + S +   +T    +
Sbjct: 352 YGGTGLGLSISRQLARLLGGDLQLHSEEGKGSTFTLYL 389


>gi|220909777|ref|YP_002485088.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866388|gb|ACL46727.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1548

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 130/829 (15%), Positives = 283/829 (34%), Gaps = 105/829 (12%)

Query: 52   AKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTD 111
             +   E  +  +++  QL++  S+         V D +     I  +L     +P     
Sbjct: 585  QRMELELQTSKAQLQQQLAELESIYQSAPIGLTVLDRELRFVRINQRLADINGVPVEAHL 644

Query: 112  LLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL----- 166
              +    L              + + G+   L  E +     +          FL     
Sbjct: 645  GRTVREVLPDLGNTA-ESLLRPILETGEP-LLNVELRGQTPAQPGVERVWMEHFLPLKQD 702

Query: 167  -RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI----- 220
             +++ +  +  E+ E     K ++++ +  +   +S    + + D  G I  AN      
Sbjct: 703  DQVIGISVVCEEITERLQAEKSIADNEARLRGFVESNVVGILYGDIYGKIAEANDELLRI 762

Query: 221  -SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
              Y +     G +    +     L  ++              + E     + G+     +
Sbjct: 763  IGYTRAELQSGSISWIDLTPPEHLSLDQEAIAEARLRGACTPY-EKEYIRKDGSRVPVLV 821

Query: 280  VRVLNSFG---EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
               L            +D+S      + L     ++      I +++  + +   N+   
Sbjct: 822  GYSLVGEAREESVAFILDLSDRKRDEEALRQLNLLIELSYEPILVWNLEQGIILWNQGCE 881

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSA---NKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            +L+           S+ +LL+ L      + L +    + W   +    ++ +       
Sbjct: 882  QLYGYTRTEAIGQNSH-QLLQTLHPLPLPDFLAQLEQERQWTGEVTQTTRTGQQVIV--- 937

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGET--IDHLSEGVAVF 450
                ++   ++ +  +   +    N+T +   E  +   L++VQ     +  L++     
Sbjct: 938  ----ESRQQLIETRGQKLVLETNLNITERKQAELEREQLLLRVQRYAQQLHGLTQAALAI 993

Query: 451  GPDGRI-----KLSNPAFRSLW----------KTEENRLSPGTHIRNIAATCSRYYNESD 495
                 I      ++  A+R +                +     ++ +  A    Y  + D
Sbjct: 994  NSASTIPATLDLVTEQAYRIIGCHQAVTSLTLGQNWAQSIHAIYLSDKYAHWRNYEAKPD 1053

Query: 496  GWDLFAAIITSFDDERKSLQGTLE-------------------------LLSDSVLEYSI 530
            G  ++A ++  F+   +  Q  LE                         L+        +
Sbjct: 1054 GSGIYA-LVGQFNRPLRLTQTELESHPNWRGFSQAADHHPPLRGWLAAPLVGRDGHNLGL 1112

Query: 531  IPLPNA--------------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            I L +               Q         ++ R  +A  E   A  + + IK+ F+  +
Sbjct: 1113 IQLSDKYEGEFSEADETILVQLAQMAAVAIENTRLYQAEQEARAAAERTNRIKDEFLAIL 1172

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+ELRSPL  I+G++ LL+     +  ++Q+  +  I  ++ + + L++D+LD+A +  G
Sbjct: 1173 SHELRSPLNPILGWSQLLQNRPFDAATTQQA--LTTIERNARLQIQLIDDLLDVARILRG 1230

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             + +  S + L  ++     ++ T     +I +++    ++G    D  RL QI   +LS
Sbjct: 1231 KLNMETSPVDLVAVIEAAIDTVKTAALAKSIHLELDL-AQIGPVCGDATRLQQIVWNLLS 1289

Query: 697  NAMDFSSKGSTVILKAARDNGDF------------IFSVKNNGSSIPEDMCKSVFNRFVS 744
            NA+ F+ +G  V ++     G+               +V + G  I  D    +F  F  
Sbjct: 1290 NAIKFTPQGGRVEVRLGEVEGEAGTDQTVPSPHFAKLTVTDTGKGISPDFLPHIFESFRQ 1349

Query: 745  NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
                  R   G+GLGL+IV S +  HGG +   S+ +    T     P 
Sbjct: 1350 EDASTTRKYGGLGLGLAIVRSLVEAHGGTIWADSAGEGQGATFTVCFPL 1398



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 110/359 (30%), Gaps = 68/359 (18%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTE----- 227
              EL E     + L N    F+ L ++++ + W R+     + + + +Y++        
Sbjct: 320 TQKELLERIQAEESLRNSEERFRQLAENINAVFWIREAAEDRVSYVSPAYQRLWGLNPEE 379

Query: 228 --TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-TLEHGNN-KSYKIVRVL 283
             T+  V+   I    +    +   +  +    ++ +   +     H    + + +    
Sbjct: 380 LYTDPQVWVNYIHPDDREVVAQAFAQKAAIGQFDQEYRIVLPDGSLHWVRDRCFPLYDQT 439

Query: 284 NSFGE-AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
                  GIA DV+    V                 +A+ D  +  +    S   ++  +
Sbjct: 440 GQVYRFTGIAEDVTATKQVE----------------VALRDSEQRNELA-MSVARMFSFE 482

Query: 343 LAFLATNPSNDELLEFLRSANKLP------------------EQLNWKTWKENIFSVYKS 384
                  PS D +    +    LP                     +   +   + S+   
Sbjct: 483 WE-----PSTDRVRRSSQCHAILPASGILTTEDTGYNFFQHIHPDDRDRFIALLQSLTPE 537

Query: 385 SETHKDTWHL--PNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNT---L 432
           + T++ T+ L  P+   + +  ++             I +  +++ +  +E +  T    
Sbjct: 538 NPTYRTTYRLVGPDQVIVSLEESARALFDAQGKLNRLIGIVGDVSERQRMELELQTSKAQ 597

Query: 433 VKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           ++ Q   ++ +      G+ V   + R    N     +          G  +R +    
Sbjct: 598 LQQQLAELESIYQSAPIGLTVLDRELRFVRINQRLADINGV-PVEAHLGRTVREVLPDL 655



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/345 (10%), Positives = 92/345 (26%), Gaps = 31/345 (8%)

Query: 143 LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
           +  E         +G++  +     +  +        E      +L   ++  + ++ S 
Sbjct: 555 VSLEESARALFDAQGKL--NRLIGIVGDVSERQRMELELQTSKAQLQQQLAELESIYQSA 612

Query: 203 DFLVWHRDQAGDILWANISYKKNTETE-GIVFQKAIGESRKLFKEEIKKRMISSSALEKN 261
              +   D+    +  N                + + E         +  +       + 
Sbjct: 613 PIGLTVLDRELRFVRINQRLADINGVPVEAHLGRTVREVLPDLGNTAESLLRPILETGEP 672

Query: 262 F-----CETVSTLEHGNNKSYKIVRVLNSF----GEAGIAIDVSK----EITVNDQLTHT 308
                                +    L       G + +  ++++    E ++ D     
Sbjct: 673 LLNVELRGQTPAQPGVERVWMEHFLPLKQDDQVIGISVVCEEITERLQAEKSIADNEARL 732

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
              + +  V I   D    +   N   + +     A L +  S   +          PE 
Sbjct: 733 RGFVESNVVGILYGDIYGKIAEANDELLRIIGYTRAELQSG-SISWI------DLTPPEH 785

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV----TSNPRGGTIWMFENLTVQVD 424
           L+          +  +   ++  +   +G  + V+V        R  ++    +L+ +  
Sbjct: 786 LSLDQEAIAEARLRGACTPYEKEYIRKDGSRVPVLVGYSLVGEAREESVAFILDLSDRKR 845

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            E     L       I+   E + V+  +  I L N     L+  
Sbjct: 846 DEEALRQLN----LLIELSYEPILVWNLEQGIILWNQGCEQLYGY 886


>gi|300773122|ref|ZP_07082991.1| response regulator/sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759293|gb|EFK56120.1| response regulator/sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 489

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 160/377 (42%), Gaps = 23/377 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +   +  +   E K    V     T++ L +       +G+I+  N  +     + E   
Sbjct: 134 LISEIETRKKAEMKLKERVDHLHFTLESLPQIAFTANAEGQIEFVNEKWFKYSLSSEIFP 193

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                 +NI           D W L  A   S + E +  +   ++    +L   IIP+ 
Sbjct: 194 KTHPDDKNI----------RDEWLLAMATGNSLELEVRIKEIDADIFRFHLL--RIIPIR 241

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + ++ +V                +  ++ ++ K+ F+   S+EL++PLT+I  +  LL
Sbjct: 242 EQEIVVKWVGTF----------TDIDDQKQIEKKKDEFLSIASHELKTPLTSIKAYIQLL 291

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +     NS  S+Y+  +    + L +L+ D+LD++ +D G +K+N       +LL+ V
Sbjct: 292 ERTLNAEQNSATSKYLSTVQNQVSKLNSLIADLLDISKIDNGKLKMNKKLFNFENLLSNV 351

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +I      +NIRI+   D      + D  R+ Q+    L+NA+ +S     VI++  +
Sbjct: 352 VDTIYHTHENSNIRIEREGDVIDQPVLGDEIRIEQVLINYLTNAIKYSPDSKRVIIRTEQ 411

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVS 773
           +N      V + G  IPE   K++FN+F        + +G+G+GL I    I  H G   
Sbjct: 412 ENTQIKVDVTDFGIGIPEHKQKNIFNKFYRVEESSLKFQGLGIGLYICSEIIRQHNGTFG 471

Query: 774 ISSSDEGVTTINCRIPS 790
           I S     +T    IP 
Sbjct: 472 IQSQTGQGSTFYFTIPL 488


>gi|224588363|gb|ACN58987.1| GAF sensor hybrid histidine kinase [uncultured bacterium BLR19]
          Length = 2129

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 151/345 (43%), Gaps = 20/345 (5%)

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              SL +  E  L     +             +   +   A   S   E K+ Q  L   +
Sbjct: 1329 LASLDEFSETHLDFLNQLTESLGIVLNTIETNTRTEELLAQSQSLAGELKTQQEELRRTN 1388

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            D + + +++ +   Q         +   A ++L EK E L    + K+ F+ ++S+ELR+
Sbjct: 1389 DELQDKALLLVK--QKDEVEAKNKEVEEARKSLEEKAEQLTLTSKYKSEFLANMSHELRT 1446

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL +++     L  +  G+LN +Q +Y + I +    L+ L+NDILDL+ +++G +  N 
Sbjct: 1447 PLNSLLILAQQLYENAEGNLNDRQIRYAKTIHSCGDDLIQLINDILDLSKIESGFISANI 1506

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
            S++ + ++ + V+ +        N+R ++ +D +L  S   D QRL QI   +LSNA  F
Sbjct: 1507 SSVKIGEITSFVETTFKPISEARNLRFRIETDYELPASMETDIQRLNQILKNLLSNAFKF 1566

Query: 702  SSKGSTVILKAARDNGDFI--------------FSVKNNGSSIPEDMCKSVFNRFVSN-- 745
            + KG  V L+       +               FS+ + G  IP++    +F  F     
Sbjct: 1567 TEKGE-VSLRIYSAKKSWKPGLPTLDSAPTVVAFSISDTGIGIPQEKQLIIFEAFQQAEG 1625

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +   +  G GLGLSI      L GG + + S     +T    IP 
Sbjct: 1626 STSRKYGGTGLGLSISRGLAELLGGTIELESQAGMGSTFTLYIPL 1670


>gi|65318845|ref|ZP_00391804.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 591

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ +   L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVGINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++VZ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVZIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  HGG +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHGGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|270293636|ref|ZP_06199838.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275103|gb|EFA20963.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 300

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 132/278 (47%), Gaps = 8/278 (2%)

Query: 515 QGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            G+      +++    +P  N  + +    ++T   + E  L +  E   +AD +K++F+
Sbjct: 26  DGSFMWTHVNIIVERYMPEQNIIEIICINYDITQLKQTEAMLIQAKEKAEEADWLKSAFL 85

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  IIGF+ LL          ++ QY+  I+ ++ +LL L+ND+LDL+ +
Sbjct: 86  ANMSHEIRTPLNAIIGFSSLL---HYVENEQEREQYISLINHNNQLLLKLINDVLDLSKI 142

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG ++L+       +L+ E        +    +++        G    D  R+ QI + 
Sbjct: 143 EAGHIELHSEWFNPAELIEESITEYERNVPA-GVKLFARYPAAPGQIEHDPMRIKQILNN 201

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            +SNA+  + +G  + +    D      SV + G  IP D    +F RF       Q  G
Sbjct: 202 FISNALKNTVQG-YIEVYYETDTDGIRISVSDTGCGIPPDKLGMIFERFEKVDSFAQ--G 258

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGLSI +S +    G +++ S+    +T    +P +
Sbjct: 259 AGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELPCR 296


>gi|188578874|ref|YP_001915803.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523326|gb|ACD61271.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 727

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 10/252 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                 E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  
Sbjct: 46  QRHGELEQELLRAKQAAEAAMLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLD 102

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   ++  ++SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +       
Sbjct: 103 QRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGR 162

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFI 720
            +R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      
Sbjct: 163 QLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLR 222

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S  
Sbjct: 223 FQVRDTGIGIAPDQQTRLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEP 282

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 283 GRGSTFWFEIPL 294


>gi|152987294|ref|YP_001346367.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150962452|gb|ABR84477.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 1418

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 123/740 (16%), Positives = 245/740 (33%), Gaps = 74/740 (10%)

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRV 159
             +    Q     +   +W      + L    ++L  +     L         +      
Sbjct: 272 PGQRLFGQELQREIYGRHWQMQFSALPL--FVQRL-HQPSPRILFLAGGLVSLLLAALVN 328

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           +G+    R        + LA             ++   + D      W+R       +  
Sbjct: 329 AGALGRQRRRREAATQARLAAIVGNSADGIIGAALDGTITD------WNRGAEALFGYRE 382

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE--------TVSTLEH 271
                    + +V      E   +     +   + S    +   +        TVS +  
Sbjct: 383 EEAVGRRVVDLLVPPSKESEELDILARIARNEQVVSFDTVRRHQDGHLLDVAVTVSPILD 442

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI--LHNLTV------------ 317
           G  +     + +        A    +E+    +         L  L V            
Sbjct: 443 GEGRVVGASKTVRDISAKKAAEARIRELNAGLEHQVAERTAELRRLNVLLGSVLQAASEV 502

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS---NDELLEFLRSANKLPEQLNWKTW 374
           +I   D++  +   N     +       +    S        E L    +L EQ  ++  
Sbjct: 503 SIITLDRDGIISGFNLGAERMLGYRAEEVVGKVSPTLLHSERELLARGRELGEQ-GFRVL 561

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLET 427
                   + +ET + T+   +G  L V ++       +    G + +  ++T   + E 
Sbjct: 562 VARAER--EGAETREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAER 619

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE---------ENRLSPGT 478
           +            D    G+  +         N     L+                    
Sbjct: 620 EMAAARDQLQMAADVARLGIWRWTLADDSLQWNERMCELYGQPLALREGGLVYEHWRSRL 679

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           H  ++  T +      +G   +  I      D   + +Q   ++  D+       PL   
Sbjct: 680 HPEDLERTEASLRAAVEGRGNYDVIFRVLLPDGGIRFIQAGAQVERDA----DGTPL--- 732

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q     +++T   + +  L E  E    A   K+SF+ ++S+E+R+P+  ++G   L + 
Sbjct: 733 QVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQ 792

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q  Y++  S+++T LL L+NDILD + ++AG + L      L  L+ ++  
Sbjct: 793 T---DLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGKLLLEMHPFELEPLMQDLAV 849

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            ++    + ++ +    D +L  + V DR RL QI   +  NA+ F++ G  V++   R 
Sbjct: 850 VLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAGNALKFTAHGH-VLVSLRRL 908

Query: 716 NGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
             D         V + G  I  +  + +F  F        RR  G GLGL I +  ++L 
Sbjct: 909 AHDAHRVGLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLM 968

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + + SS    +     +
Sbjct: 969 GGRLQVESSPGSGSRFWFDL 988


>gi|148549273|ref|YP_001269375.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148513331|gb|ABQ80191.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 917

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 142/328 (43%), Gaps = 20/328 (6%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV------LE 527
           L     I +         N+     L   + T    E   L   +  +++++      L+
Sbjct: 189 LRMSRTINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELAHGINRMAETLQNAHEELQ 248

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +SI    +  T     N+         L    +   +A  IK+ F+ ++S+E+R+PL  I
Sbjct: 249 HSI----DQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGI 304

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GFT LL+ S++     +Q  Y+  I  S+  LL ++N+ILD + ++AG + L+     L
Sbjct: 305 LGFTHLLQKSEM---TPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNL 361

Query: 648 NDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            DL+ +    +A   H   +  + +I      S V D  RL QI + ++SNA+ F+ +G+
Sbjct: 362 RDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGT 421

Query: 707 TVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
            V+     D  +       SV++ G  +     +++F  F    +    Q  G GLGL I
Sbjct: 422 IVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVI 481

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  I   G  + + S+    +     +
Sbjct: 482 SKRLIEQMGDEIGVDSTPGEGSQFWISL 509


>gi|69247565|ref|ZP_00604399.1| PAS [Enterococcus faecium DO]
 gi|257880369|ref|ZP_05660022.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257891027|ref|ZP_05670680.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257894280|ref|ZP_05673933.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|258614680|ref|ZP_05712450.1| sensory box histidine kinase VicK [Enterococcus faecium DO]
 gi|260562330|ref|ZP_05832844.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68]
 gi|293559840|ref|ZP_06676355.1| sensor protein YycG [Enterococcus faecium E1162]
 gi|314943533|ref|ZP_07850298.1| PAS domain S-box [Enterococcus faecium TX0133C]
 gi|314948949|ref|ZP_07852316.1| PAS domain S-box [Enterococcus faecium TX0082]
 gi|314994104|ref|ZP_07859421.1| PAS domain S-box [Enterococcus faecium TX0133B]
 gi|314998035|ref|ZP_07862927.1| PAS domain S-box [Enterococcus faecium TX0133a01]
 gi|68194789|gb|EAN09266.1| PAS [Enterococcus faecium DO]
 gi|257814597|gb|EEV43355.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257827387|gb|EEV54013.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257830659|gb|EEV57266.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|260073254|gb|EEW61595.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68]
 gi|291606204|gb|EFF35623.1| sensor protein YycG [Enterococcus faecium E1162]
 gi|313587965|gb|EFR66810.1| PAS domain S-box [Enterococcus faecium TX0133a01]
 gi|313591471|gb|EFR70316.1| PAS domain S-box [Enterococcus faecium TX0133B]
 gi|313597771|gb|EFR76616.1| PAS domain S-box [Enterococcus faecium TX0133C]
 gi|313644648|gb|EFS09228.1| PAS domain S-box [Enterococcus faecium TX0082]
          Length = 611

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 147/384 (38%), Gaps = 24/384 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  +++         +      + H+++GV      G++   N    SL  
Sbjct: 236 GQLADTFNQLAERIEEAQDTMEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLD 295

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +    + G  I  +      Y       D    ++       +S Q  L       +++
Sbjct: 296 IKNEE-AIGQSILTLLDIEEEYTLRKLLEDPNEMVLDRSTSTLESDQMILR------VDF 348

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 349 SMIRRESGFISGLVAVLHDVTEQE-----------KTERERREFVSNVSHELRTPLTSMR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L+L+ +D G  +L    +  N
Sbjct: 398 SYIEALSEGAWKD-EEVAPNFLKVTLDETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFN 456

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   E N +I+     +      D  +++Q+   I++NA+ +S  G 
Sbjct: 457 ELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGG 516

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           T+  +    + + + S+ + G  IP+     VF RF        R   G GLGL+I    
Sbjct: 517 TITCRLLETHNNVVLSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREV 576

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I  H G +   S +   +T    +
Sbjct: 577 IKAHRGAIWAESKEGKGSTFYISL 600


>gi|330501096|ref|YP_004377965.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328915382|gb|AEB56213.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 1160

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 163/365 (44%), Gaps = 14/365 (3%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             L   + E ++ ++         G + ++  A R   + +E           +      
Sbjct: 360 RKLDPREREFLEAIA---------GSVGMALEAARYRQRLQEVLGQTQQLNEELQTQQEE 410

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
               ++  +  A ++       ++ Q  LE  ++ + E +         +         +
Sbjct: 411 LRAANEELEQQARVLKESQAHLETQQAELEQTNEKLSEQAQTLADQRDELDQRNTTLGRI 470

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+  L E+ E L++A   K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q ++
Sbjct: 471 QAQ--LEERAEELQRASRYKSEFLANMSHELRTPLNSSLILAKLLAENGKGNLDDEQVKF 528

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I ++   LLNL+NDILD+A V+AG +++      L  +L  ++        E  +  
Sbjct: 529 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPERTPLASMLESLRDVFVPLAGERGLSF 588

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++    +L   +  DRQR  QI   +LSNA  F+ +G   +  + +D+    F+V++ G 
Sbjct: 589 QIEEQRELPQVLFTDRQRAEQILRNLLSNAFKFTDRGGVTLSVSRQDDHYLAFAVRDTGI 648

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D  +++F  F        RR  G GLGLSI      L GG +++SS     +T   
Sbjct: 649 GIAADQQEAIFEAFRQADGTTNRRYSGTGLGLSISRDLAGLLGGSITVSSVPGEGSTFTL 708

Query: 787 RIPSK 791
            +P +
Sbjct: 709 LLPER 713


>gi|53712805|ref|YP_098797.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215670|dbj|BAD48263.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 870

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 107/520 (20%), Positives = 207/520 (39%), Gaps = 56/520 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +  Q      + H++   +  +D +  + F NRS +++  +               E
Sbjct: 375 QNRLVAQRDEFDNVFHSIRDGVITYDTDFRIHFTNRSLLKMLHLPKD------------E 422

Query: 358 FLRSANKLPEQLNWKTW---KENIFSVYKSSETHKDTWHLP---------NGQTLHVIVT 405
             R    LP    +K +   KE +  + K   T + +  +P         +G    V   
Sbjct: 423 AARPYEGLPAGSIFKIYNNGKEILRPMLKQVVTEESSVVIPENSFMQEVHSGSYFPVSGE 482

Query: 406 SNPRG------GTIWMFENLTVQVDLETKYNTLVKVQGETID--HLSEGVAVFGPDGRIK 457
             P        G      N++ +   +  +   V          ++  G+  F P G + 
Sbjct: 483 VVPIRAHGKITGMALSARNISDEEMQKRFFRMAVDESSIYPWQYNIRTGLFTF-PAGFLT 541

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQG 516
                 R  +   +  +S G   R I        ++   +++F   +       R S + 
Sbjct: 542 ------RFGFAENKTTISRGEMDRMIHPD-----DQESAYEIFNRALAGLSQSTRMSFRQ 590

Query: 517 TLELLSDSVLEYSIIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                +    EY    L           +    ++      E  LT   +   +AD++K+
Sbjct: 591 LSGDGNYEWWEYRTSVLAGLTTDTPYSILGVCQSIQRYKTTEEELTAARDKALQADKLKS 650

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+E+R+PL  I+GF+DLL  +  G    +   ++E I+ +  +LL L+NDILDL
Sbjct: 651 AFLANMSHEIRTPLNAIVGFSDLLSDTS-GFTEEEVKLFIETINKNCGLLLALINDILDL 709

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQ 689
           + +++G M   ++   L  L+  V  S    M    +++ +          V D  RL Q
Sbjct: 710 SRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPP-GVQLVLKLPENSKKYLVTDNVRLQQ 768

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + + +++NA+ F+++GS        + G     V++ G  I ED  + +F RF       
Sbjct: 769 VVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGISEDGLRHIFERFYKVDSFT 828

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           Q  G GLGLSI ++ +    G ++++S +   T    R+P
Sbjct: 829 Q--GAGLGLSICQTIVGRLNGMITVASEEGHGTRFTVRLP 866


>gi|94314643|ref|YP_587852.1| two-component regulatory system sensory histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93358495|gb|ABF12583.1| sensor protein, histidine kinase-response regulator [Cupriavidus
           metallidurans CH34]
          Length = 784

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 106/520 (20%), Positives = 197/520 (37%), Gaps = 37/520 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDE 354
           +K   +  + T    +L +   A+ +      +   +  +  L  +    L   P  +  
Sbjct: 35  AKMAELKAERTLFQSLLDSSPNAVLVVSHEHRILKVSEPYARLCGVSTEDLIGKPLVHSH 94

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRG-- 410
                     L E    +        +       +        +T  V  T   +  G  
Sbjct: 95  TTSRFLDLGGLLELTLLRMDGNERSDLITLGIPEQSV------RTFRVNATQCRSEDGVF 148

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            GT  +  +++ QV  + + +       +  D LS        +     SN      W  
Sbjct: 149 SGTAIVLTDISEQVAAQHRVDQTSAAMDDITDALSVTFFQLCRE-----SNGHIWLPWVK 203

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWD--LFAAIITSFDDERKSLQGTLELLSDS--V 525
                +       +           D  +  LF   +      ++ +  T+ L SD+  V
Sbjct: 204 GMQNTTLNWSAERMMRDGGGILPNLDASEKTLFIGAVDQSIATQQPMDVTVRLTSDNRWV 263

Query: 526 LEYSIIPL--PNAQTMLTF--VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              S  P   PN  T+     ++VT+  R    L   +     A E K+ F+  +S+E+R
Sbjct: 264 HIASGNPRVGPNGATLWYAYAMDVTEMQRYNTLLATASREAEAATEAKSRFLATMSHEIR 323

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  +I   DLL+ S+   L++ Q + ++    S+ +LL ++ DILD + ++AG MKL 
Sbjct: 324 TPLATVIASLDLLRESE---LSTHQREELDLADHSAKLLLEILGDILDFSRIEAGEMKLE 380

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMD 700
            + I L  ++ +V +  A ++ +  + +    +  L  + + D  RL QI   ++ NA  
Sbjct: 381 QAPIDLRLIIEDVLRIQARQIEKKGVILDFYVEAGLAATLLGDAVRLRQIVLNLVGNATK 440

Query: 701 FSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           F+ +GS V+    +    +       V + G  IP +   ++F  F        RR  G 
Sbjct: 441 FTLQGSIVVRALLIADHPETQTIQLEVSDTGIGIPAEKQAALFKAFSQADVSTTRRFGGS 500

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPSKE 792
           GLGLSI    +   GG V ++S+    +T      +P  E
Sbjct: 501 GLGLSICSRLVQAMGGAVVLTSTPGVGSTFRVELTLPVVE 540



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 136/392 (34%), Gaps = 40/392 (10%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
               + + K  +L    ++F+ L DS    V        IL  +  Y +     G+  + 
Sbjct: 28  RNARQASAKMAELKAERTLFQSLLDSSPNAVLVVSHEHRILKVSEPYARLC---GVSTED 84

Query: 236 AIGESR------KLFKEEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRV----- 282
            IG+          F +      ++   ++ N    + TL       +++++        
Sbjct: 85  LIGKPLVHSHTTSRFLDLGGLLELTLLRMDGNERSDLITLGIPEQSVRTFRVNATQCRSE 144

Query: 283 -LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                G A +  D+S+++    ++  T   + ++T A+++     + Q    S   +W +
Sbjct: 145 DGVFSGTAIVLTDISEQVAAQHRVDQTSAAMDDITDALSVT----FFQLCRESNGHIW-L 199

Query: 342 DLAFLATNPSNDELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSETHK----DTWHLPN 396
                  N + +   E  +R    +   L+       I +V +S  T +          +
Sbjct: 200 PWVKGMQNTTLNWSAERMMRDGGGILPNLDASEKTLFIGAVDQSIATQQPMDVTVRLTSD 259

Query: 397 GQTLHVIV---TSNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            + +H+        P G T+W     ++T       +YNTL+       +  +E  + F 
Sbjct: 260 NRWVHIASGNPRVGPNGATLWYAYAMDVTE----MQRYNTLLATASREAEAATEAKSRFL 315

Query: 452 PDGRIKLSNPAF---RSLWKTEENRLSPGTHIR-NIAATCSRYYNESDGWDLFAAIITSF 507
                ++  P      SL    E+ LS       ++A   ++   E  G  L  + I + 
Sbjct: 316 ATMSHEIRTPLATVIASLDLLRESELSTHQREELDLADHSAKLLLEILGDILDFSRIEAG 375

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           + + +     L L+ + VL      +     +
Sbjct: 376 EMKLEQAPIDLRLIIEDVLRIQARQIEKKGVI 407


>gi|237746860|ref|ZP_04577340.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229378211|gb|EEO28302.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 821

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 210/505 (41%), Gaps = 60/505 (11%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + D++  L + N  + +L              +E +    +   L    + + W E + +
Sbjct: 50  LLDEHYTLIWANDFYYQLIGWPK---------EEYVARFHNRPDLYYADHPEEWNELVHA 100

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT------------VQVDLETK 428
           V ++  TH++ + L       V       G  +W+  N++            V   + T 
Sbjct: 101 VTRAIRTHQNGYTL-------VTRMPRKDGSHVWV--NISNVFGEEYINGYPVSYTVMTD 151

Query: 429 YNTLVKVQGE---TIDHLSEGVAVF--GPDGRIKL-SNPAFRSLWKTEENRLSPGTHIRN 482
            + LV++Q E   T D+L   VA F    +G + L  N  FR  +  ++NR   G  + N
Sbjct: 152 VDDLVRMQKEQSITYDNLPGFVAKFQVNENGFLFLEGNERFRKFFGYKQNRADYG--LSN 209

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQG---TLELLSDSVLEYSIIPLPNAQTM 539
           +    +R         +       F  + K   G    L++ +D +      P+      
Sbjct: 210 LDTGKNRQAYAQHFPLMRKGKRVHFTLQAKDKTGGNVWLQVNADCIDRVHGNPVYLV-IY 268

Query: 540 LTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +   ++T+    ++ L E++E L        +A++ K+ F+  +S+++R+P+  IIG T 
Sbjct: 269 IDITDITEQRELQKQLEERSEMLHNALQAAEQANKAKSDFLSQMSHDIRTPMNAIIGMTA 328

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +           +    ++ I+ SS +LL L+N++LD++ +++G + +      LN++L 
Sbjct: 329 I--AGSHLDDKDRVRDCLQKITVSSRLLLGLINEVLDMSRIESGRISITEEEFSLNEMLQ 386

Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +   I   +        + + + +  +   D Q + Q+F  ILSNA+ ++  G  ++L 
Sbjct: 387 NIVTIIQPSIMAKRHAFDIQARELQHENVTGDPQHIQQVFLNILSNAVKYTPDGGKILLS 446

Query: 712 AARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
                      G + F  ++NG  +  +  + +F  F           +G GLG++I ++
Sbjct: 447 IREKPSQTAGYGCYEFVFRDNGYGMKSEFLRKIFKPFERAEDAAVRAVQGTGLGMAISKN 506

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            + +  G + + S+    +T    +
Sbjct: 507 IVQMMDGDIQVESTYGNGSTFTVTL 531


>gi|254225188|ref|ZP_04918801.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
 gi|125622287|gb|EAZ50608.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
          Length = 1020

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 470 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 529

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L + Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 530 LLQDT---TLTATQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 586

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 587 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRI 646

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 647 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 706

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 707 GELQLASQLGQGSCFWFTLPL 727


>gi|257899653|ref|ZP_05679306.1| histidine kinase [Enterococcus faecium Com15]
 gi|293570842|ref|ZP_06681889.1| sensor protein YycG [Enterococcus faecium E980]
 gi|257837565|gb|EEV62639.1| histidine kinase [Enterococcus faecium Com15]
 gi|291609110|gb|EFF38385.1| sensor protein YycG [Enterococcus faecium E980]
          Length = 611

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 147/384 (38%), Gaps = 24/384 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  +++         +      + H+++GV      G++   N    SL  
Sbjct: 236 GQLADTFNQLAERIEEAQDTMEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLD 295

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +    + G  I  +      Y       D    ++       +S Q  L       +++
Sbjct: 296 VKNEE-AIGQSILTLLDIEEEYTLRKLLEDPNEMVLDRSTSTLESDQMILR------VDF 348

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 349 SMIRRESGFISGLVAVLHDVTEQE-----------KTERERREFVSNVSHELRTPLTSMR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L+L+ +D G  +L    +  N
Sbjct: 398 SYIEALSEGAWKD-EEVAPNFLKVTLDETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFN 456

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   E N +I+     +      D  +++Q+   I++NA+ +S  G 
Sbjct: 457 ELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGG 516

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           T+  +    + + I S+ + G  IP+     VF RF        R   G GLGL+I    
Sbjct: 517 TITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREV 576

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I  H G +   S +   +T    +
Sbjct: 577 IKAHRGAIWAESKEGKGSTFYISL 600


>gi|255013301|ref|ZP_05285427.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 423

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 159/373 (42%), Gaps = 12/373 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DG-RIKLSNPAFRSLWKTEENRLSPGT 478
                +   N L  +    + ++   + V    +G R    N A       +   +   T
Sbjct: 38  EMRQSQHTINFLNILMDTILSNVFVEITVKDIFNGFRYIYFNKAAEEFTGVKAEDIIGKT 97

Query: 479 HIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                  +   +     D   +    +     E +   G + +++   L  +  P P A 
Sbjct: 98  DFELFPDSRRAHEIRTEDYHTIKTGRMVKKMVEYEKPNGEVRIVNIVRLLIT-NPDPGAS 156

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L  +    + + +  L      +++AD++KN+F+ ++S+E+R+PL  I+GF  L+  +
Sbjct: 157 PLLLVMLNDITEQRQDQLALMK--VQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTET 214

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              S   +Q +Y   I+ +  +LL L+NDILDL+ +++G +  N S + L D+  E    
Sbjct: 215 TNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVV 271

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + KM  +   +             D  R+ Q+   +LSNA+ F+SKG  + L    ++ 
Sbjct: 272 QSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG-FISLFYEVEDM 330

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               SV + G  I E+  +SVF RFV        +G GLGL I +  +   GG + + S 
Sbjct: 331 FVRVSVMDTGIGISEEKLESVFERFVKLDDF--YQGAGLGLPICKMIVEQLGGEIGVRSE 388

Query: 778 DEGVTTINCRIPS 790
               +T    +P 
Sbjct: 389 LGKGSTFWFTLPL 401


>gi|258540992|ref|YP_003175491.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
 gi|257152668|emb|CAR91640.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
          Length = 636

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 150/406 (36%), Gaps = 45/406 (11%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   + +   + +    + H+++GV      G + + N    S   
Sbjct: 240 GQLAVAVNNLSVRVEEAQEASEAERRRLDSVLAHMTDGVIATDRRGNVIIINQTALSFLN 299

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T+   +  G  I  +      Y       DL         D  + L   L L     +++
Sbjct: 300 TKNEDV-IGVSILKLLNIAKDY----TLRDLLEHQTELLLDFSEQLDHDLILR----VDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 351 SLIQRETGFISGLVAVLHDVTEQQ-----------KIDRDRKEFVSNVSHELRTPLTSVR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             Q++      +  ++ ++ND+L L+ +D+G  K N  T+ LN
Sbjct: 400 SYIEALSDGAWKD-PKLAPQFLNVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLN 458

Query: 649 DLLNEVKQSI---------------------ATKMHENNIRIKVISDGKLGSFVADRQRL 687
           +  N V                              +    IK     +      D  + 
Sbjct: 459 EFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQKKRYSIKREITHEDLWVEIDTDKF 518

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
           +Q+   I++NA+ +S  G  +  +  + +   I S+ + G  IP      +F+RF     
Sbjct: 519 MQVIDNIMNNAIKYSPDGGVITARLFQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDK 578

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++ G GLGL+I +  +    G + + S +   +T    +P +
Sbjct: 579 ARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGRGSTFYISLPYE 624


>gi|304312499|ref|YP_003812097.1| Response regulator receiver [gamma proteobacterium HdN1]
 gi|301798232|emb|CBL46454.1| Response regulator receiver [gamma proteobacterium HdN1]
          Length = 994

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 155/375 (41%), Gaps = 12/375 (3%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            +L  +     +          + +    P G ++  +P+   L+      +  G +++ 
Sbjct: 271 RELNREIQAARQRLEAVFSTTVDAMITITPKGMVQEFSPSATRLFGYLAQEVV-GQNVKM 329

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI--IPLPNAQTML 540
           +     R  ++                  + + G  +  S   +  ++    L + +T+ 
Sbjct: 330 LMPEPYRTEHDGYLQRYMTTRERRVIGIGREVVGLRKDGSIFPMRLAVGQADLSSGETLF 389

Query: 541 TFVNVTDSVR--AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
             +    S R   E +L E  E   +A   K  F+ ++S+E+R+P+  IIGFTD+L  ++
Sbjct: 390 VGMVSDLSQRKAMEDSLREAAEHAERAAAAKTRFLGNMSHEIRTPMNAIIGFTDVLLQTE 449

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  KQ  Y+  +S SS  LL L+NDILD+  +D+G + L  +   L  +   V  ++
Sbjct: 450 ---LTPKQRGYLTTVSQSSRTLLALLNDILDVTKLDSGKVVLESTDFSLRAVSELVDATL 506

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                   +    +   ++  F   D  R+ Q+ + ++ NA+ F+  G  V L    ++G
Sbjct: 507 RVSAERKGLVFSCVYPDQVPEFFKGDSLRIGQVLTNLVGNAIKFTESGE-VRLLFGYESG 565

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                V + G  + +    ++F+ F        RR  G GLG +I    +++ GG + + 
Sbjct: 566 QVHIQVSDTGIGMSQAQAATIFDPFTQADASISRRFGGTGLGTTISRQLVDVMGGRIEVE 625

Query: 776 SSDEGVTTINCRIPS 790
           S     +  +  +P 
Sbjct: 626 SELGKGSIFHVWLPL 640


>gi|255009881|ref|ZP_05282007.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147668|ref|ZP_07809861.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136435|gb|EFR53795.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 409

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 137/256 (53%), Gaps = 6/256 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            Q +LT  ++T+    +R L+ + E    A+++K++F+ ++S+E+R+PL  IIGF+ LL 
Sbjct: 157 EQMLLTIYDITELKNTQRLLSIEKENAVSAEKLKSAFIANMSHEIRTPLNAIIGFSGLLA 216

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           ++     ++++  Y++ ++ ++  LL +V D+LDL+ +++G +  +YS   +NDLL  + 
Sbjct: 217 ST---DDDAEKKMYLDIVAENNHRLLQIVTDVLDLSKIESGSLDFHYSRFDVNDLLCGLH 273

Query: 656 QSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +  ++ +  +I++   +        +++QR++QI + ++ NA+ F+  G         
Sbjct: 274 GILEIRLKDKPDIKLVCEAGTDEWMIYSEQQRIVQILTNLVHNAIKFTQNGEIRFGCRPH 333

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              D  F V + G  IP      +F+RF    H  +  G GLGL++ ++ +   GG + +
Sbjct: 334 GETDVYFYVSDTGIGIPVGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQSLGGEIGV 391

Query: 775 SSSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 392 ESEVTKGSTFWFTLPL 407


>gi|229094576|ref|ZP_04225643.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
 gi|229187694|ref|ZP_04314830.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228595762|gb|EEK53446.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228688823|gb|EEL42654.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
          Length = 588

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 31/394 (7%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G + + F NL+ ++          +      + H+++GV      G I L 
Sbjct: 210 VKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILL 269

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     +           + +  +                          E  +L    E
Sbjct: 270 NDPAEKMLNVSRETALDQSVLEVLG-----------------------IQEEFTLDHLYE 306

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVS 577
                +L++S    P        V   ++ +A    A+        + +  +  FV +VS
Sbjct: 307 EPDSVLLDFSTRNEPYILRASFSVIQKETGKANGLIAVLYDVTEQERIERERREFVANVS 366

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT +  + + L        N    Q++      +  ++ LVN +L L+ +D+  
Sbjct: 367 HELRTPLTTMRSYLEALTDGAWQDPNI-APQFLTVTQEETERMIRLVNALLQLSKLDSTE 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L    +   D  N +         E N+  K     K      D  ++ Q+   I+SN
Sbjct: 426 HRLMKEWVDFTDFFNNIIDRFEMS-KEQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISN 484

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +G TV  +          SV + G  IP++    +F RF         Q  G G
Sbjct: 485 ALKYSPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  I  HGG +   S +   TTI   +P
Sbjct: 545 LGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|150395544|ref|YP_001326011.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            medicae WSM419]
 gi|150027059|gb|ABR59176.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            medicae WSM419]
          Length = 1138

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 113/575 (19%), Positives = 218/575 (37%), Gaps = 29/575 (5%)

Query: 232  VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
               K +GE   +       +  + S  E     T        N+  +             
Sbjct: 573  EIAKQLGEHFSVHDPLPPSQTEAESRPEAETFPTSKPANAEENEHTEATEAAGEQKSEAP 632

Query: 292  AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            A  +            + E L  L VA+ +   +  L   N  F+ L   D         
Sbjct: 633  AAAMEPGPPARTGAGISSETLDRLPVALLVHHGDE-LLHGNAEFLRLTGYDD-------- 683

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH---------V 402
                L+       L                   +   KD   +P G  LH         +
Sbjct: 684  ----LDAFAHEGGLEALFALGNEAGAARPDGTMTLVRKDGRLIPVGAHLHSIRWEGKSAL 739

Query: 403  IVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            ++   P G +    +    +   E  +    +      ++  ++GV V G +G I+  N 
Sbjct: 740  MLALTPAGASEAERQARDAESAAEASRLRMEIDELRSILETATDGVVVLGQEGDIRTMNR 799

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            +  +L+  +E  +  G     + A  S+         L    + S  ++ + + G     
Sbjct: 800  SASALFDYDEAEMR-GKPFATLFAHESQKAVIDYLHGLAGHGVASVLNDGREVIGREAAG 858

Query: 522  SDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                L  +I  L ++        ++T   R E  L     A   A+  K  F+  VS+E+
Sbjct: 859  GFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAAETANAHKTEFLARVSHEI 918

Query: 581  RSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            R+PL  IIGF+D++ +   G + + +  +Y   I  S   +L++VND+LD++ ++AG M 
Sbjct: 919  RTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMD 978

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            L++  + LN+ ++E    +  + +   + I+    G +   VAD + + QI   IL+NA+
Sbjct: 979  LDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANAI 1038

Query: 700  DFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             F+  G  +++  + + NG  I  +++ G  +  +        F      G++R  G GL
Sbjct: 1039 RFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTGL 1098

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GL + ++    +    +I+S+    T +    PS+
Sbjct: 1099 GLPLTKAMTEANRAQFAITSAPNEGTLVEVSFPSQ 1133


>gi|303240209|ref|ZP_07326729.1| histidine kinase [Acetivibrio cellulolyticus CD2]
 gi|302592300|gb|EFL62028.1| histidine kinase [Acetivibrio cellulolyticus CD2]
          Length = 811

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 100/629 (15%), Positives = 239/629 (37%), Gaps = 54/629 (8%)

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF--------KEEIKKRMISSSA 257
            ++      ++ AN +Y    +         IG+              EEI + + ++  
Sbjct: 159 AFYSAADHRLIKANETYLNFLDEPFNKMDNCIGKRIDEIISGYKGSKAEEIWEDVFNTGK 218

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI----AIDVSKEITVN----------- 302
                       + G       +  +   G+       A +V++ +              
Sbjct: 219 AGNIRESRFDGYKRGITYWDSCIIPIYEGGKIKYFVENATEVTERVLNRQKIEEQNKLII 278

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLATNPSNDELLEFLRS 361
           +Q      ILHN    + +  ++  +   N    + +++        +    +      S
Sbjct: 279 EQNKKLEAILHNTANGVFVLSKDNRVHIANGEVRKYIYDYADYRNKGDIKYYDSESREMS 338

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
           ++ LP     +   E + +++ + +T ++T +             N     +++ +++T 
Sbjct: 339 SDNLPSSKALRG--ETVKNLFVTVKTPENTINTVGCARPIFDENGNVESAVLYI-QDVTE 395

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            V  + K           I+++S+ + +F  D +  L N +  +     E+         
Sbjct: 396 LVQSKEKIQKQDMQLEAIINNMSDAIFIFDKDYKCILKNQSAHNFEAYLESNFY------ 449

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS---DSVLEYSIIPLPNAQT 538
           +I      Y  +     L    +    D ++ +   L + +   D  +  S  P+ + + 
Sbjct: 450 DIVNNMKYYNFDGSEIALEDTPVFLVRDGQRVIDKVLSIKAKQKDIYVGVSGTPIFDEKG 509

Query: 539 -----MLTFVNVTDSVRAERALTEKNEALRKADE-----------IKNSFVQHVSYELRS 582
                ++   N++  ++ E+ + +K EAL  A+            IK+ F+  +S+E ++
Sbjct: 510 NFSLGVVVCRNISTHIKFEKDMRDKQEALIVAERREKEALENAIKIKDEFLTTISHEFKT 569

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT I      + +     L+    ++++ I  +    L LVN+++D++    G ++L  
Sbjct: 570 PLTVINAAIQTIYSLYESELSENVKKHLKRIHTNYYRQLKLVNNLIDMSKYREGHIQLVR 629

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + +  +  E+ + I     +  + ++  SD +      D ++  +I   +LSNA+ ++
Sbjct: 630 QDVDIISMTGEIIKFIQPISMQKGVYLQFDSDLESKVLAIDEEKYERILLNLLSNAIKYT 689

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             G ++ +        F+ +V++ G  IP +  + +F  FV       R   G G+GLS+
Sbjct: 690 PSGKSIYVNITFKGQYFVLTVRDEGLGIPIEKHECIFEHFVKVDTSLTRLTEGTGIGLSL 749

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
           V+  ++  GG +S+ S     +T    +P
Sbjct: 750 VKWIVSALGGSISLESEVGVGSTFAVTLP 778



 Score = 42.6 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 126/385 (32%), Gaps = 38/385 (9%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-----YK 223
             +        +   + K +       + +  +    V+   +   +  AN       Y 
Sbjct: 258 TEVTERVLNRQKIEEQNKLIIEQNKKLEAILHNTANGVFVLSKDNRVHIANGEVRKYIYD 317

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
                     +    ESR++  + +           KN   TV T E+  N       + 
Sbjct: 318 YADYRNKGDIKYYDSESREMSSDNLPSSKALRGETVKNLFVTVKTPENTINTVGCARPIF 377

Query: 284 NSFGEAGIAI----DVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
           +  G    A+    DV++ +   +++         I++N++ AI IFD++      N+S 
Sbjct: 378 DENGNVESAVLYIQDVTELVQSKEKIQKQDMQLEAIINNMSDAIFIFDKDYKCILKNQSA 437

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW--KTWKENIFSVYKSSETHKDTWH 393
                   +      +N +   F  S   L +   +  +  +  I  V       KD + 
Sbjct: 438 HNFEAYLESNFYDIVNNMKYYNFDGSEIALEDTPVFLVRDGQRVIDKVLSIKAKQKDIYV 497

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT-------LVKVQGETIDHL--- 443
             +G  +     +   G  + +  N++  +  E              + + E +++    
Sbjct: 498 GVSGTPIFDEKGNFSLG--VVVCRNISTHIKFEKDMRDKQEALIVAERREKEALENAIKI 555

Query: 444 -SEGVAVFGPDGR--IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
             E +     + +  + + N A ++++   E+ LS      N+     R +         
Sbjct: 556 KDEFLTTISHEFKTPLTVINAAIQTIYSLYESELS-----ENVKKHLKRIHTNYYRQ--- 607

Query: 501 AAIITSFDDERKSLQGTLELLSDSV 525
             ++ +  D  K  +G ++L+   V
Sbjct: 608 LKLVNNLIDMSKYREGHIQLVRQDV 632


>gi|289665858|ref|ZP_06487439.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 946

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 132/784 (16%), Positives = 262/784 (33%), Gaps = 83/784 (10%)

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH--YIKLSKATEKLRKEGQSF 141
           ++ D   + P + G           D  LL    W               E+ R+ G   
Sbjct: 10  VISDHVQDMPSLQGDFPLEAAQGLRDA-LLQNRPWFTTDAMAPGAPDYVAEQYRRSGLRA 68

Query: 142 DLVAET-QNDCAIKIEGRVSGS-CAFL----RILSLDGIYS-ELAETTLKCKKLSNHISV 194
            L     ++   +   G    +   +L     ++ L      E  +  +  ++L+ + + 
Sbjct: 69  SLAIPLHKHGRLVAAIGVHQRAPRQWLSTEIELVRLVAARCWESMQRAMAQQQLAANEAR 128

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE---EIKKR 251
            + L ++L  +++  D  G   + N  + + T       + A               +  
Sbjct: 129 LRRLANTLPQIIFIADPDGRPHYFNQRWYEYTGLYPSNSEDATWHRAHTADGLRLSAQAW 188

Query: 252 MISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQL 305
            ++ S       E       G ++ +  + + V    G      G   D+        QL
Sbjct: 189 TLALSGERAFEVECELLRHDGQSRWHLARALPVRGDDGSISEWIGTYTDIHDRRAFEQQL 248

Query: 306 T----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND-- 353
                    +   +   I + D      + N  + +         +D  +      +D  
Sbjct: 249 RESEVRFRALCETVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQALDQGWWDVMHPDDAA 308

Query: 354 -----------ELLEFLRSANKLPEQLNWK----------TWKENIFSVYKSSETHKDTW 392
                      +  EFL           ++                     S     +  
Sbjct: 309 RVRYAFEQALNQRGEFLAEYRVRRHDGQYRWCIDTASPHFASDGRFLGHIGSLTDISERK 368

Query: 393 HLPNGQ-----TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           H+ +        L +I T  P    +     L+V+   E      V V+ E    LS G 
Sbjct: 369 HIEDATASDRAILSLITTGAPLPVVLDAIA-LSVEARGEIPLYCSVMVRDEISHTLSFGS 427

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR--------NIAATCSRYYNESDGWDL 499
           A   P   I+       S    +    +   H+            A+ + ++  S    +
Sbjct: 428 AAHFP---IEYRGHFEPSPIGPDGPPCARSAHLGRQLICADIQADASFASHHAISAAMGI 484

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEK 558
            A  +T        + GTL +  D     S+     A++       V +  R +  L   
Sbjct: 485 AACCVTPILASNGQVLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLS 544

Query: 559 NE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            +           A  +K+ F+  +S+ELR+PL  I+G++ L+++    S N    + + 
Sbjct: 545 LQAETAARGQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQSDVAESAN--LGRGLV 602

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+     +++D+LD++ + +G ++L      +  L+    + +        I +++
Sbjct: 603 IIERSARAQKQIIDDLLDMSAIMSGKIRLQAEHFDIAGLVRSTLELMQPTALARGIALEL 662

Query: 672 ISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            +       F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++ G  I
Sbjct: 663 DAPCDGELWFFGDAGRLQQVLTNLLSNALKFTPTGGTVRVAMDIEDERLRLCVQDTGIGI 722

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCR 787
             +    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ +         
Sbjct: 723 AAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIV 782

Query: 788 IPSK 791
           +P +
Sbjct: 783 LPFR 786



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 89/299 (29%), Gaps = 42/299 (14%)

Query: 48  RNSLAKKVNETYSFLSEICDQLS--KYHSLLTENNCLTIVWDGKDETPEIIGQ-LHQRID 104
           R   A+        +++     +  +   L      +  + D  D  P    Q  ++   
Sbjct: 103 RLVAARCWESMQRAMAQQQLAANEARLRRLANTLPQIIFIAD-PDGRPHYFNQRWYEYTG 161

Query: 105 I-PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI-----EGR 158
           + P    D      W + H         + LR   Q++ L    +    ++      +G+
Sbjct: 162 LYPSNSED----ATWHRAHTA-------DGLRLSAQAWTLALSGERAFEVECELLRHDGQ 210

Query: 159 VSGSCAF---LR-----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
                A    +R     I    G Y+++ +     ++L      F+ L +++  ++W  D
Sbjct: 211 SRWHLARALPVRGDDGSISEWIGTYTDIHDRRAFEQQLRESEVRFRALCETVPAMIWMSD 270

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN---FCETVS 267
             GD ++ N  +   T                   +  + R     AL +      E   
Sbjct: 271 AQGDCVYWNPRWYDFTGQGEDQALDQGWWDVMHPDDAARVRYAFEQALNQRGEFLAEYRV 330

Query: 268 TLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               G  +    +   +          G  G   D+S+   + D       IL  +T  
Sbjct: 331 RRHDGQYRW--CIDTASPHFASDGRFLGHIGSLTDISERKHIEDATASDRAILSLITTG 387


>gi|146337386|ref|YP_001202434.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146190192|emb|CAL74184.1| Putative Sensor histidine kinase with PAS and Response regulator
           receiver domains [Bradyrhizobium sp. ORS278]
          Length = 754

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 141/367 (38%), Gaps = 16/367 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +      +   + + +   DG I   N A+  +   +   L        +    
Sbjct: 102 ELQEAEQRARNLFEQQGDLIVMREQDGTIVFVNDAYCQMAGLDRENLVGSKFAFALIEQG 161

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S        I ++      + +  L                 A       +VTD
Sbjct: 162 DSALEPSGTRVHDQRIESAIGPRWIAWREALVRSDAG---------HPAVLQCVGRDVTD 212

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               ERAL +  +    A+  K+ F+   S+E+R+PL  I+G            L  +Q+
Sbjct: 213 RTETERALADARDQANAANRAKSRFLAMASHEIRTPLNGILGMG---GLLLETPLTPEQT 269

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y + + AS   L++L+N++LD + ++AG + L      L  L+ E+ + +A +     +
Sbjct: 270 TYAKAVRASGEALMSLINELLDYSKIEAGKLALEAQPFSLAALIEEITELLAPRAQAKQL 329

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKN 725
            I    D +L ++V  D  RL Q+   +  NA+ F++KG   VI +      +  F V++
Sbjct: 330 EIAAYMDERLPTWVTGDAARLRQVLLNLAGNAIKFTAKGGVAVIAEPGIWPNEISFQVRD 389

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +  + +F  F            G GLGL+I +  +   GG +S+ S      T
Sbjct: 390 TGIGIAAEAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRISLQSEPGAGAT 449

Query: 784 INCRIPS 790
               +P 
Sbjct: 450 FEVCVPL 456


>gi|331019216|gb|EGH99272.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 775

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 146/368 (39%), Gaps = 6/368 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G +   N     +    E  +        
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVF 318

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 319 YLPQECPQHPDMALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKIT 378

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 379 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 437

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++   
Sbjct: 438 ---QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 494

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI +K +         +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 495 ADGNIELKELPHLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++    
Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 614

Query: 782 TTINCRIP 789
                 +P
Sbjct: 615 CRFTLALP 622


>gi|260425965|ref|ZP_05779944.1| PAS/PAC sensor hybrid histidine kinase [Citreicella sp. SE45]
 gi|260420457|gb|EEX13708.1| PAS/PAC sensor hybrid histidine kinase [Citreicella sp. SE45]
          Length = 738

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 103/544 (18%), Positives = 203/544 (37%), Gaps = 39/544 (7%)

Query: 275 KSYKIVRVLN--SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
           ++ ++ R LN      A +A    +       L    E +   +   A+FD N  L   N
Sbjct: 55  RTLELERTLNLLHESNAQLARANDETEAARRNLADAIETV---SEGFALFDGNDLLVMCN 111

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKL--PEQLNWKTWKENIFSVYKSSETHKD 390
             F   +   +  L    S ++ ++ +  +  L  PE  + + W  +    +       +
Sbjct: 112 SRFCRDFRDTVRDLRPGLSFEDYVDRVSRSRYLSLPEGTSAEAWARDRMRKHNDRRVLFN 171

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN-----TLVKVQGETIDHLSE 445
             H  + + L V        GT+ +  ++T  + LE +          ++   T+DHL +
Sbjct: 172 VRHGQD-RWLQVSEHRTANSGTVILQTDVTDIIRLERQERLKLKDKQTRMIRATLDHLDQ 230

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAII 504
           GV +F    R+   N    +L      RL  G     +       ++  SDG        
Sbjct: 231 GVCIFDETARLVAWNEKIGTLLNLPVRRLHLGASFEGLNELLEPEFHFASDGAREGFRHW 290

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
                 R  +   L     +VL+     +P+   + +  +VT    A R LTE NE L +
Sbjct: 291 AEQSGRRGPISFELTRDVGTVLQVFGRGMPDGGFLFSCTDVTAEREAARRLTEVNEMLEQ 350

Query: 565 A------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                              +  K+ FV   S++L  PL+    F   L        +   
Sbjct: 351 RVMERTLELEDALSAAERANASKSRFVAAASHDLLQPLSAAKLFISSLADRMGNDGDRAV 410

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
               E    S+     L++ +LD++ +++  +K +   + L +++  ++  +        
Sbjct: 411 LGKAESALTSAE---QLIDALLDISKLESDALKFDIRPVALREIIGPLRDEMEVLAARKG 467

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +++++I  G   +  +D   L ++   +++NA+ ++  G  V++   R  G     V + 
Sbjct: 468 LKLRMIDSG--LTVESDPSYLRRVVQNLVANAIRYTDAG-RVVVGIRRRGGAARIEVWDT 524

Query: 727 GSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  I E+   ++F  F     R     G+GLGL+IVE      G  + + S     +   
Sbjct: 525 GPGIAEEDQSTIFEEFKRLDTRASSNDGLGLGLAIVERACARLGHPLGLWSEPGRGSCFM 584

Query: 786 CRIP 789
             +P
Sbjct: 585 VSLP 588


>gi|255026540|ref|ZP_05298526.1| sensor protein ResE [Listeria monocytogenes FSL J2-003]
          Length = 350

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 155/372 (41%), Gaps = 34/372 (9%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +      +     +  +++GV  F  D  I LSNP                  +  I   
Sbjct: 3   SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLHNWFFSPENTEKVL-IPVA 61

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +   N++               E+K  Q      +D      +  L   + + + V V 
Sbjct: 62  LNELLNDTL--------------EKKESQVGEITFADHTYVAILTLLYTGEHVRSIVAVI 107

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E+ L          +++K+ FV +VS+ELR+P++ + G+++ +      S + + 
Sbjct: 108 RDMTEEKQL----------EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQS-DEEV 156

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++ + I   S  +  LVND+LDLA ++AG  +++   + L  LL +V  +      EN 
Sbjct: 157 REFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENF 216

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK---GSTVILKAARDN--GDFIF 721
           + + +  +     +  D  R+ Q+   ++ NA+  + K      VILK   D    + + 
Sbjct: 217 VELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEARSNLVI 276

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSD 778
           +V +NGS I E+    +F RF       +R    G G+GL+IV++ +  H G +S+ S  
Sbjct: 277 TVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESEL 336

Query: 779 EGVTTINCRIPS 790
              +     +P 
Sbjct: 337 GKGSDFIITLPL 348



 Score = 38.0 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 94/300 (31%), Gaps = 46/300 (15%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +  +      IL  +   +  F  ++ +   N    E   +   F +   +        
Sbjct: 4   ALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEF--LHNWFFSPENT-------- 53

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ---TLHVIVTSNPRGGTIWMF 416
                +P  LN     E +    +  E+        +      L ++ T       + + 
Sbjct: 54  -EKVLIPVALN-----ELLNDTLEKKESQVGEITFADHTYVAILTLLYTGEHVRSIVAVI 107

Query: 417 ENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            ++T +  LE            +  T + +     + + +GVA    + R       F  
Sbjct: 108 RDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVR------EFAQ 161

Query: 466 LWKTEENRLSPGTHIRNIAATCSRY--YNESDGW-----DLFAAIITSFDDERKSLQGTL 518
           +    +  L  G  + ++         +N+ D        L   +I++FD   K     L
Sbjct: 162 I--IYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENFVEL 219

Query: 519 ELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            L  ++  LEYS  P    Q ++  +        +     K    +  DE +++ V  VS
Sbjct: 220 GLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEARSNLVITVS 279


>gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1831

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1329 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1388

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  G+L+ KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 1389 NAEGNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEA 1448

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +      E  + + V    +L  +   D QRLLQ+   +LSNA+ F+  GS  ++++ AR
Sbjct: 1449 TFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPAR 1508

Query: 715  DN--------------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
            D+                        FSV + G  I     + +F  F         +  
Sbjct: 1509 DDVPQAIREQLLEAGSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYG 1568

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +   S     +T    +P 
Sbjct: 1569 GTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1606


>gi|283852012|ref|ZP_06369287.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572562|gb|EFC20547.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 543

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 162/382 (42%), Gaps = 19/382 (4%)

Query: 420 TVQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           T    LE +   L+  Q        H   G+ +    GRI  +NP   +L       L  
Sbjct: 18  TRVAALEARVADLLARQERCELFFQHSVMGILIGDAAGRILDANPRALALLGYAAGEL-C 76

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G +IR+I     +     D     A +  SF  ER+  +     L   V ++S +   + 
Sbjct: 77  GKNIRDIVHPDDQQAVSVDAGPQAARLGRSFSIERRWRRKNGSWLPVQV-DFSQLDAASG 135

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              +   ++T    AE A          A + K++F+ ++S+E+R+PL  ++G   LL  
Sbjct: 136 LFQVMIQDITARKAAEEATIAALALAETASQAKSAFLANMSHEIRTPLNGVMGMLQLLAG 195

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +       +Q+ Y+     S++ LL +++D+LD++ +D+G M L      L D+L  V  
Sbjct: 196 T---PTTPEQADYLATAMDSASGLLRILSDVLDISHLDSGRMVLADERFALTDVLEPVAA 252

Query: 657 SIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           S A +    ++   + ++         D  R+ QI   + +NA+ ++  G  V L+ A  
Sbjct: 253 SFAHEAALKSLAFSRRVAPDTPDELRGDPGRVRQILYNLTANAIKYTPSGE-VRLEVAPV 311

Query: 716 NGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
            G+         F V + G  I   M + VF  F            G G+GL+IV+   +
Sbjct: 312 PGEADAAGATLEFLVADTGIGIAPAMQEQVFEIFSQADPSVTRSYGGTGVGLAIVKGLTD 371

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L GG V++ S +   T +  R+
Sbjct: 372 LMGGRVTLCSQEGFGTEVRVRL 393



 Score = 38.0 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 17/169 (10%)

Query: 280 VRVLNSFGEAGIAI-DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRS 334
            R  +  G    A   V+        L    E       +  + I I D    +   N  
Sbjct: 4   TRTDSGPGPLAAARTRVAALEARVADLLARQERCELFFQHSVMGILIGDAAGRILDANPR 63

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
            + L       L        + + +   ++    ++         +    S + +  W  
Sbjct: 64  ALALLGYAAGELCGK----NIRDIVHPDDQQAVSVD----AGPQAARLGRSFSIERRWRR 115

Query: 395 PNGQTLHVIVTSNPRGGTIWMF----ENLTVQVDLETKYNTLVKVQGET 439
            NG  L V V  +       +F    +++T +   E      + +    
Sbjct: 116 KNGSWLPVQVDFSQLDAASGLFQVMIQDITARKAAEEATIAALALAETA 164


>gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
 gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
          Length = 761

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 10/252 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E AL +  EA   A+  K+ F+ ++S+E+R+P+  +IG  +LL+ ++   L+  Q
Sbjct: 218 ERDEREFALEQAREAADIANRAKSEFLANMSHEIRTPMNGVIGMAELLQETR---LDDDQ 274

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y E I  S + LL ++NDIL+ + ++AG ++L+ +   L   + +V   ++ K  E  
Sbjct: 275 RMYAETIGKSGSALLTIINDILNFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKG 334

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-F 721
           + + +  D  L   F  D  R+ Q+ + I  NA+ F+ +G     V   A  D G  +  
Sbjct: 335 VEVTMRYDPALPELFEGDAGRIRQVITNIAGNAVKFTCEGYVFIEVTGTAQPDGGLLVRL 394

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +D    +F  F    +   R   G GLGL+I    + L GG V + S   
Sbjct: 395 QVTDTGIGIAQDRIGRIFRAFEQADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVPG 454

Query: 780 GVTTINCRIPSK 791
             +    +IP +
Sbjct: 455 KGSVFTIQIPLR 466


>gi|169334535|ref|ZP_02861728.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259252|gb|EDS73218.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM
           17244]
          Length = 872

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 123/260 (47%), Gaps = 10/260 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  + + TD V  + +L    E   KA+E K+ F+  +S+E+R+PL  IIG   L + +
Sbjct: 333 WLTVYSDETDQVLMQESLKNALEKAEKANEAKSDFLSRMSHEIRTPLNGIIGMVTLAREN 392

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +  SK+   V  ISASS  LL L+NDILD++ +++G +++        + +      
Sbjct: 393 I--NNKSKEIDCVNKISASSKHLLVLINDILDMSKIESGKVEIKNKKFGFRNFVESTVSL 450

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAAR 714
             ++  E  I+ K +  G + S+V  D     QI   +LSNA+ F+ KG  +   +   +
Sbjct: 451 FFSQAKEKGIKFKSVLIGNIPSYVKGDYLHTNQIIVNLLSNAVKFTDKGGEITNRISLLK 510

Query: 715 DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHG 769
           +  +     F V + G  I +     +FN F            G GLGL I + F  + G
Sbjct: 511 EEDNKVWIRFEVSDTGVGIEKKNFDKIFNPFEQEDASVSYNYGGTGLGLPIAKRFTQMLG 570

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G++S+ S     +T    +P
Sbjct: 571 GNISLKSEVGKGSTFTVDLP 590


>gi|83311392|ref|YP_421656.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946233|dbj|BAE51097.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1196

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 169/392 (43%), Gaps = 24/392 (6%)

Query: 413 IWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTE 470
           + +F +   ++ +         +     +D     +A+    D  I L NP +  L++  
Sbjct: 382 LAVFRDAMAKLQESSEALIESERRLRRILDTSPLALAISRVSDNAILLVNPRWSELYRLP 441

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFA--AIITSFDDERKSLQGT--LELLSDSVL 526
           + R    T    +A+  +   N +   +L      ++ F+   ++  G     +LS + +
Sbjct: 442 KGRALGMT----VASCYADPANRARLVELVRKRGFVSGFECRMRASDGHEFWAMLSAAEI 497

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E    P      + +  ++T     E AL E  +   +A + K+ F+  +S+E+R+P+  
Sbjct: 498 EMDGEP----AVIASSTDITRHKEEEAALAEAKKVAEEASQAKSLFLATMSHEIRTPMNG 553

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++    LL+      L ++Q +    I  S+T LL ++NDILD + ++A  ++L    + 
Sbjct: 554 VLTMAQLLEDM---PLPAEQREMARVIRDSATSLLTIINDILDFSKIEADKLQLELVDLS 610

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++++  V   +  +  E  I +    D  L    V D  RL QI + +  NA+ F+ KG
Sbjct: 611 LSEVVEGVADLLTIRAQEKGISLITFVDPALTDMVVGDPIRLRQIITNLAGNAIKFTDKG 670

Query: 706 ST-VILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
              + ++A           FS+ + G  +  +    +F  F+        +  G GLGLS
Sbjct: 671 YVRIAVRALDPRERPLRLEFSITDTGIGLDSEQQARLFEPFMQADITISRRYGGTGLGLS 730

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I    + + GG + + S+    +T   ++P +
Sbjct: 731 ICRRLVAMMGGEIGVRSNVGQGSTFWFQVPLE 762


>gi|298490277|ref|YP_003720454.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298232195|gb|ADI63331.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 446

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 116/252 (46%), Gaps = 4/252 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
               +  R    +  +N  L +A  +K  F+  +S+E R+P+  IIGF+ +L   K G L
Sbjct: 148 CKNQELERQREQIQLQNLRLLEASRLKTKFLATISHEFRTPMNAIIGFSQILLRPKFGQL 207

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           NS+Q   VE I  +   LL L+N++LD + +++G ++L    + L  ++N     I +  
Sbjct: 208 NSQQVDMVERILNNGKHLLMLLNEVLDFSKLESGRLELKPEILDLEKIVNNSVSEIMSLA 267

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
               + + V +D +      D  R+ QI   +L+NA+ F+  G  + ++           
Sbjct: 268 EAKKLSLVVETDLQNTLIFNDSVRVRQILINLLANAVKFTESGG-IWVEVKEITQNRLTI 326

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           ++++ G  I     K +F  F         +  G GLGL+I +S + + GG + + S   
Sbjct: 327 TIRDTGIGISSKDFKHIFEAFRQVDQGISRKYPGTGLGLAITDSLVQMMGGKIFLESKLG 386

Query: 780 GVTTINCRIPSK 791
             +     +P +
Sbjct: 387 VGSIFKIELPRQ 398


>gi|126658667|ref|ZP_01729813.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110]
 gi|126620104|gb|EAZ90827.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110]
          Length = 826

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 173/384 (45%), Gaps = 34/384 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---S 475
           +     ++++         E + ++  G+ +   +G+IK +NPA   +++   + L    
Sbjct: 218 IKRNKKIQSQLIKQETQFKELVYNIENGIIIVNQEGKIKFANPAALKIFEQPLHSLLDYE 277

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G  I N           ++   +    IT  + E +S+                     
Sbjct: 278 FGLPIINDKPVELEILKSNNQTGIVEMNITLTEWENESV--------------------- 316

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +++F  +T   +AE  + +       A++ K  F+ +VS+ELR+P+  I+GF+ LLK
Sbjct: 317 --YLVSFREITMRKKAEEEIIKAKLEADSANQAKTEFLTNVSHELRTPMNAILGFSQLLK 374

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             KL   +    +Y++ I  +S ILL+L+N++LD+   +AG ++LNY    +   L E  
Sbjct: 375 L-KLKVDDPLIYEYIDTIYNNSNILLSLINELLDINQAEAGKIELNYCGFSVRQFLGETI 433

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
           +  ++++ +  + + +  +  +  F+  D  RL QI   ++SN++ F++KG   +++   
Sbjct: 434 KLFSSQLSKKTVNLLIDIEDNVPKFINFDSLRLRQILINLISNSLKFTTKGHIKILISIQ 493

Query: 714 R---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
               ++      V++ G  I ++  + +F  F  +  +   R  G GLGL I +      
Sbjct: 494 ELYLNSCTLKIFVEDTGIGIKDEDKERIFQVFTQSKGQDNYRYGGNGLGLFITQKITECL 553

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG +++ S     +T     P+ E
Sbjct: 554 GGTITLESEWGKGSTFTIIFPNVE 577


>gi|91204590|emb|CAJ70818.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 546

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 17/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--------------K 598
           R L + N+ L+  D+ K+ F+  VS+ELR+PLT IIGFT+++K                K
Sbjct: 290 RELKDANQKLQDLDKAKSGFLSTVSHELRTPLTAIIGFTNIIKKRLDTFIFPQIETNAIK 349

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 +  + +  I +    L NL+ND+LDLA ++AG ++       + +++     + 
Sbjct: 350 SQKAIQQIKENINIILSEGERLTNLINDVLDLAKIEAGKIEWKRHQTSVTEVIMNATAAT 409

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              + +  + + V  +  +  F  D+ R +Q+   ++SNA+ F+ KG+ +   A + +  
Sbjct: 410 TALIEQKGLALNVDIEKNIPDFYGDKNRFIQVVINLISNAIKFTDKGA-ISCYAKQTDNK 468

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +V + G  I  +  + +F++F         +  G GLGL I +  +  HGG +   S
Sbjct: 469 IQVTVMDTGVGIAPENLEKIFDKFKQVGDTLTNKPGGTGLGLPICKQIVEYHGGSIHAES 528

Query: 777 SDEGVTTINCRIPSK 791
                T  +  IP +
Sbjct: 529 EPNKGTAFSFTIPLR 543


>gi|319786002|ref|YP_004145477.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464514|gb|ADV26246.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 964

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 12/262 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +      ++    + E+ L +  +A   A   K  F+  +S+E+R+PL  II   DL+  
Sbjct: 77  ERNQLQRDLQRHDKLEQQLMQAKQAAEAAALAKGEFLATMSHEIRTPLNGIIPMLDLI-- 134

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G+L   Q   +     SS  LL +V+DILD + ++A  ++L  +T  L + L+ + Q
Sbjct: 135 -GHGTLAPDQRDMLHTAHESSLQLLRIVDDILDYSKLEANRLELEITTFNLREPLDAMLQ 193

Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +     +  +R+++  D  +      D  RL Q+   ++ NA+ F+ +G  + L   R 
Sbjct: 194 LMRRPAEDKGLRLELDLDPNVRLPVRGDPVRLRQVLGNLVGNAVKFTERGG-ITLVVRRL 252

Query: 716 NGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                     F V++ G  I  D    +F  F        R   G GLGL+I +  ++L 
Sbjct: 253 GETPVQHLLRFEVRDTGIGIDADSQARLFRAFSQADASTTRLYGGTGLGLAICKRIVDLM 312

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + + S     +T    IP 
Sbjct: 313 GGRIGVESEPGRGSTFWFEIPL 334


>gi|298249355|ref|ZP_06973159.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547359|gb|EFH81226.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 554

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/568 (16%), Positives = 197/568 (34%), Gaps = 58/568 (10%)

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------AGIAIDVSKEITVN 302
           ++ + +    E       ST   G  + + +  V     +       G   D+ ++    
Sbjct: 17  QRAVQTGGLYETEQRLRQSTT--GAYRWFLMQAVPFKDAQGTILKYIGTCTDIEEQKQAE 74

Query: 303 DQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +   + E    +   +   +     +  +++ N+ +       +   A      + L  
Sbjct: 75  QRSKTSEENWRMLAETVPQLVWASSPDGRVEYWNQRWYAYTGSSIEH-ALGHGWSQFL-- 131

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPR----GG 411
                       ++          +  E ++  + L +GQ       +    P     G 
Sbjct: 132 --------HPDEYQHTLTVWHHALEMGEPYEIEYRLKDGQAEGYRWFLARGMPVRDETGQ 183

Query: 412 TIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL-SNPAFRSLW 467
            +  F    ++  Q   E       +     ID    G+     +G + + +N AF  + 
Sbjct: 184 IVKWFGTSTDIENQKRTEEALRQSQERIRALIDSNIIGIVSVEGEGEVLVEANEAFLHMT 243

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD--DERKSLQGTLELLSDSV 525
              +  +   T                +    F   I   +   +   L+  L     S 
Sbjct: 244 GYIQEDVRSRT-------LNRVKITPLEHAPFFQRAIQEVNARGQHTPLETELVCKDGSR 296

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           L   +  +   +     ++      A + L          ++ K+ F+   S+ELR+PL 
Sbjct: 297 LPVLVGSVIFQKRPRQIISFVLDNSARKEL----------EQRKDDFINMASHELRNPLA 346

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +   T L++       + + +  +  +      L  L+ ++LD++ + AG ++     +
Sbjct: 347 ALKMQTQLVRKRLEKQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQAGKLEYLQEPV 406

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  LL+EV  ++      + +   V+      + + D+ RL Q+F+ ++SNA+ +S   
Sbjct: 407 DLEALLHEVADTMQQISTTHAV---VVRGAAPCTLIGDKGRLEQVFTNLISNAIKYSPDA 463

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
            TV +            V ++G  IP +    +F RF   A   Q+   G+G+GL IV  
Sbjct: 464 KTVEIDLDASPEMVTIRVHDHGPGIPREQRDKIFERFYRVADPNQKAIPGLGMGLYIVAE 523

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  HGG +++ S     +T    +P K
Sbjct: 524 IVKRHGGTITVDSEVGKGSTFTVTLPRK 551



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 109/295 (36%), Gaps = 28/295 (9%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           IL   G  +++ E     ++       +++L +++  LVW     G + + N  +   T 
Sbjct: 57  ILKYIGTCTDIEEQKQAEQRSKTSEENWRMLAETVPQLVWASSPDGRVEYWNQRWYAYTG 116

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMI---SSSALEKNFCETVSTLEHGN---NKSY--KI 279
              I      G S+ L  +E +  +     +  + + + E    L+ G     + +  + 
Sbjct: 117 -SSIEHALGHGWSQFLHPDEYQHTLTVWHHALEMGEPY-EIEYRLKDGQAEGYRWFLARG 174

Query: 280 VRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQF 330
           + V +  G+     G + D+  +    + L  + E +  L  +     +++  +   L  
Sbjct: 175 MPVRDETGQIVKWFGTSTDIENQKRTEEALRQSQERIRALIDSNIIGIVSVEGEGEVLVE 234

Query: 331 HNRSFVELWEIDLAFLATNPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            N +F+ +       + +   N      LE      +  +++N +       +  ++   
Sbjct: 235 ANEAFLHMTGYIQEDVRSRTLNRVKITPLEHAPFFQRAIQEVNARGQ----HTPLETELV 290

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            KD   LP      VI    PR    ++ +N + + +LE + +  + +    + +
Sbjct: 291 CKDGSRLPV-LVGSVIFQKRPRQIISFVLDN-SARKELEQRKDDFINMASHELRN 343


>gi|257865289|ref|ZP_05644942.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257871617|ref|ZP_05651270.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257874889|ref|ZP_05654542.1| histidine kinase [Enterococcus casseliflavus EC20]
 gi|257799223|gb|EEV28275.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257805781|gb|EEV34603.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257809055|gb|EEV37875.1| histidine kinase [Enterococcus casseliflavus EC20]
          Length = 613

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 149/387 (38%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 238 GQLAETFNQLGERIEETQEAMESERNRLDSVLSHMTDGVVATDRRGKVITINEMAMSLLN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                 + G  I  +      Y       +    ++    ++       L       +++
Sbjct: 298 VSNEE-AIGQSILTLLEIDEEYTLRKLLENPEDMLLERPSNDLTGTNMILR------IDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K ++ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SMIRRESGFISGLVAVMHDVTEQE-----------KNEQERREFVSNVSHELRTPLTSMR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L L+ +D+G  +L    I  N
Sbjct: 400 SYIEALSEGAWKD-PEIAPNFLKVTLDETDRMIRMINDLLSLSRMDSGNSQLQLEYINFN 458

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +++N V       +        I+     +      D  +++Q+   I++NA+ +S  G 
Sbjct: 459 EMVNFVLDRFDMMVTNESKKYLIRREFTKRELWVEVDTDKMIQVIDNIMNNAIKYSPDGG 518

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESF 764
            + +K    + + + S+ + G  IP+     +F+RF         Q+ G GLGL+I    
Sbjct: 519 IITVKLMETHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARARQQGGTGLGLAISREV 578

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  HGG +   S +   +T    +P +
Sbjct: 579 IKAHGGAIWAESRENRGSTFYIMLPYE 605


>gi|254721257|ref|ZP_05183047.1| sensor histidine kinase ResE [Bacillus anthracis str. A1055]
          Length = 591

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ +   L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVGINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  HGG +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHGGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|150018231|ref|YP_001310485.1| integral membrane sensor hybrid histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904696|gb|ABR35529.1| integral membrane sensor hybrid histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 748

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 13/244 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L        KA+E K+ F+ ++S+E+R+PL  +IGF++LLK +     + K   Y+E I
Sbjct: 427 ELKYAKIEAEKANEAKSEFLANMSHEIRTPLNAVIGFSELLKNTIK---DEKHKSYIETI 483

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + +   LL ++NDILDL+ ++AG ++L Y  + L+++  E+K     K    NI   +  
Sbjct: 484 NVAGNSLLTIINDILDLSKIEAGRIELQYKPLKLSNIFREIKYIFKQKTKSKNIEFLLDI 543

Query: 674 DGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIFSVKNN 726
                 S + D  R+ QI   ++ NA+ F+ KG  V L         + + DF  S+++ 
Sbjct: 544 QEDFDESILLDEVRIRQILLNLVGNAVKFTDKG-YVKLSLKGTTSQNKSSVDFRISIEDT 602

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E   + +F+ F   + +   +  G GLGLSI +    +  G + + S +   +T 
Sbjct: 603 GIGIAEGEREKIFDAFKQASGQSIKKFGGTGLGLSITKKLTEIMQGKIFVESIEGKGSTF 662

Query: 785 NCRI 788
               
Sbjct: 663 YVEF 666


>gi|197336284|ref|YP_002156881.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
           MJ11]
 gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
           MJ11]
          Length = 931

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT    SL+  Q  Y++ 
Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT----SLSENQQDYLQT 330

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG + L        D L+EV   +A   HE  + I + 
Sbjct: 331 IERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLK 390

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNG 727
            D ++ S  + D  R+ Q+ + ++ NA+ F+ KG+  + ++      D++   F V++ G
Sbjct: 391 IDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVELKHLADDYVDLQFVVRDTG 450

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  I+  GG + +SS     +T  
Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFW 510

Query: 786 CRI 788
             I
Sbjct: 511 FTI 513


>gi|312961645|ref|ZP_07776143.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
 gi|311283904|gb|EFQ62487.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
          Length = 917

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V    I     DN     SV++ G 
Sbjct: 387 YRDTPLSLVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDNVQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|289669047|ref|ZP_06490122.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 942

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 132/784 (16%), Positives = 262/784 (33%), Gaps = 83/784 (10%)

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH--YIKLSKATEKLRKEGQSF 141
           ++ D   + P + G           D  LL    W               E+ R+ G   
Sbjct: 6   VISDHVQDMPSLQGDFPLEAAQGLRDA-LLQNRPWFTTDAMAPGAPDYVAEQYRRSGLRA 64

Query: 142 DLVAET-QNDCAIKIEGRVSGS-CAFL----RILSLDGIYS-ELAETTLKCKKLSNHISV 194
            L     ++   +   G    +   +L     ++ L      E  +  +  ++L+ + + 
Sbjct: 65  SLAIPLHKHGRLVAAIGVHQRAPRQWLSTEIELVRLVAARCWESMQRAMAQQQLAANEAR 124

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE---EIKKR 251
            + L ++L  +++  D  G   + N  + + T       + A               +  
Sbjct: 125 LRRLANTLPQIIFIADPDGRPHYFNQRWYEYTGLYPSNSEDATWHRAHTADGLRLSAQAW 184

Query: 252 MISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQL 305
            ++ S       E       G ++ +  + + V    G      G   D+        QL
Sbjct: 185 TLALSGERAFEVECELLRHDGQSRWHLARALPVRGDDGSISEWIGTYTDIHDRRAFEQQL 244

Query: 306 T----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND-- 353
                    +   +   I + D      + N  + +         +D  +      +D  
Sbjct: 245 RESEVRFRALCETVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQALDQGWWDVMHPDDAA 304

Query: 354 -----------ELLEFLRSANKLPEQLNWK----------TWKENIFSVYKSSETHKDTW 392
                      +  EFL           ++                     S     +  
Sbjct: 305 RVRYAFEQALNQRGEFLAEYRVRRHDGQYRWCIDTASPHFASDGRFLGHIGSLTDISERK 364

Query: 393 HLPNGQ-----TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           H+ +        L +I T  P    +     L+V+   E      V V+ E    LS G 
Sbjct: 365 HIEDATASDRAILSLITTGAPLPVVLDAIA-LSVEARGEIPLYCSVMVRDEISHTLSFGS 423

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR--------NIAATCSRYYNESDGWDL 499
           A   P   I+       S    +    +   H+            A+ + ++  S    +
Sbjct: 424 AAHFP---IEYRGHFEPSPIGPDGPPCARSAHLGRQLICADIQADASFASHHAISAAMGI 480

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEK 558
            A  +T        + GTL +  D     S+     A++       V +  R +  L   
Sbjct: 481 AACCVTPILASNGQVLGTLNIYYDRPHLPSLREQAMARSASHLAGIVIERTRVDAKLKLS 540

Query: 559 NE-------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            +           A  +K+ F+  +S+ELR+PL  I+G++ L+++    S N    + + 
Sbjct: 541 LQAETAARGQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQSDVAESAN--LGRGLV 598

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+     +++D+LD++ + +G ++L      +  L+    + +        I +++
Sbjct: 599 IIERSARAQKQIIDDLLDMSAIMSGKIRLQAEHFDIAGLVRSTLELMQPTALARGIALEL 658

Query: 672 ISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
            +       F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++ G  I
Sbjct: 659 DAPCDGELWFFGDAGRLQQVLTNLLSNALKFTPTGGTVRVAMDIEDERLRLCVQDTGIGI 718

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCR 787
             +    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ +         
Sbjct: 719 AAEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIV 778

Query: 788 IPSK 791
           +P +
Sbjct: 779 LPFR 782



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 89/299 (29%), Gaps = 42/299 (14%)

Query: 48  RNSLAKKVNETYSFLSEICDQLS--KYHSLLTENNCLTIVWDGKDETPEIIGQ-LHQRID 104
           R   A+        +++     +  +   L      +  + D  D  P    Q  ++   
Sbjct: 99  RLVAARCWESMQRAMAQQQLAANEARLRRLANTLPQIIFIAD-PDGRPHYFNQRWYEYTG 157

Query: 105 I-PQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI-----EGR 158
           + P    D      W + H         + LR   Q++ L    +    ++      +G+
Sbjct: 158 LYPSNSED----ATWHRAHTA-------DGLRLSAQAWTLALSGERAFEVECELLRHDGQ 206

Query: 159 VSGSCAF---LR-----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
                A    +R     I    G Y+++ +     ++L      F+ L +++  ++W  D
Sbjct: 207 SRWHLARALPVRGDDGSISEWIGTYTDIHDRRAFEQQLRESEVRFRALCETVPAMIWMSD 266

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN---FCETVS 267
             GD ++ N  +   T                   +  + R     AL +      E   
Sbjct: 267 AQGDCVYWNPRWYDFTGQGEDQALDQGWWDVMHPDDAARVRYAFEQALNQRGEFLAEYRV 326

Query: 268 TLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
               G  +    +   +          G  G   D+S+   + D       IL  +T  
Sbjct: 327 RRHDGQYRW--CIDTASPHFASDGRFLGHIGSLTDISERKHIEDATASDRAILSLITTG 383


>gi|218439787|ref|YP_002378116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172515|gb|ACK71248.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 936

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+        L++    K+ F+  V +ELR+PL  + G T LL  +K   L ++Q +++ 
Sbjct: 256 EQESQTSLHLLQQESLAKSQFLAMVGHELRTPLNAVTGMTGLLLDTK---LTNQQREFIN 312

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL ++N+ILD A ++A  ++L  +   L   + E       +  E  + +  
Sbjct: 313 IIRNSGETLLTMINNILDFAKIEANKLELEETPFELGQSIEEALHLFVPQASERKLELAY 372

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNG-- 717
           + +     + + D  RL QI   +LSNA+ F+  G  V+           +   +D    
Sbjct: 373 LIEPHTPNAIIGDVTRLKQILVNLLSNAVKFTESGEVVVYVNATPVTQHPVTPQKDKSSP 432

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             +  F+VK++G  IP +    +F  F  V  +   +  G GLGL+I +    + GG + 
Sbjct: 433 LYEIRFAVKDSGIGIPREKMDRLFKSFSQVDASTSRKYGGTGLGLAISKRLTEMMGGKMW 492

Query: 774 ISSSDEGVTTINCR 787
             S +   +T    
Sbjct: 493 FHSVEGKGSTFYFT 506


>gi|239626628|ref|ZP_04669659.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239516774|gb|EEQ56640.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 961

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 103/533 (19%), Positives = 210/533 (39%), Gaps = 52/533 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIF---DQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + DQ  +   + + +   IA+    + NR++Q  NR  +EL            SN+ +
Sbjct: 158 KRLMDQAAYIGHLYNAVPEGIALITVEEPNRFIQL-NREGMELLGYPE-----GTSNEAI 211

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLH---VIVTSNPRGG 411
                    LP+       +    +  +  +   +   L N G+      ++  +    G
Sbjct: 212 SGRSIREVILPDDHE-DMDRLLDHASREGGKAGFEKRMLKNSGEVFWGAGILEKTMDENG 270

Query: 412 T---IWMFENLTVQVDL-----ETKYNTLVKVQGETIDHLSEGV----------AVFGPD 453
           T   I  F ++T +          K    + + G   +     +           ++   
Sbjct: 271 TPVLIATFHDITAEKLEEEAAERDKLQERITLVGAISNAYPVIIRLNLTRDTLNFIYVRQ 330

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G   +++   +  +       S G H  N     SR+  ES    L       F + +  
Sbjct: 331 G--LMTDLGSQQTYSRLYEDFSSGVHPDNRKEYASRFSLESLRESLVHNKNEVFLESKHL 388

Query: 514 L-QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADE 567
           L  G    +S  ++ Y   P  +    +      D  R E      AL    ++ + A  
Sbjct: 389 LADGEYHWISTQII-YVDNPYSDDMLAILISRRIDEQRHEEEQQRLALESALDSAKAASN 447

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+ ++S+++R+P+  IIG T +   +       +  + ++ I+ S   LL+L+ND+
Sbjct: 448 AKSRFLSNMSHDIRTPMNAIIGMTAI--AAAHIDDRDRVLECLKKINLSGKHLLSLINDV 505

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
           LD++ ++ G + +        +L+ +  + I ++ +   + + V +S  K  + V D  R
Sbjct: 506 LDMSKIENGKLSMRDEPFNFPELVADAAELIRSQANAGRLAMDVCLSPMKHENVVGDPLR 565

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFN 740
           + Q+   ILSNA+ ++  G  V ++A ++        +++F   + G  +     + +F 
Sbjct: 566 MRQVCINILSNAVKYTPPGGFVRIEAWQEESPVLGYANYVFRCTDTGVGMEPSFLEHIFQ 625

Query: 741 RFVSN-AHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F     H G R  G GLG++I ++ I+L  G + + SS    +     IP K
Sbjct: 626 PFERARDHAGMRVAGTGLGMAITKNIIDLMNGDIHVESSPGKGSVFTISIPLK 678


>gi|227552547|ref|ZP_03982596.1| histidine kinase [Enterococcus faecium TX1330]
 gi|257888222|ref|ZP_05667875.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257896890|ref|ZP_05676543.1| histidine kinase [Enterococcus faecium Com12]
 gi|293378480|ref|ZP_06624643.1| PAS domain S-box [Enterococcus faecium PC4.1]
 gi|227178296|gb|EEI59268.1| histidine kinase [Enterococcus faecium TX1330]
 gi|257824276|gb|EEV51208.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257833455|gb|EEV59876.1| histidine kinase [Enterococcus faecium Com12]
 gi|292642809|gb|EFF60956.1| PAS domain S-box [Enterococcus faecium PC4.1]
          Length = 611

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 147/384 (38%), Gaps = 24/384 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  +++         +      + H+++GV      G++   N    SL  
Sbjct: 236 GQLADTFNQLAERIEEAQDTMEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLD 295

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +    + G  I  +      Y       D    ++       +S Q  L       +++
Sbjct: 296 VKNEE-AIGQSILTLLDIEEEYTLRKLLEDPNEMVLDRSTSTLESDQMILR------VDF 348

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 349 SMIRRESGFISGLVAVLHDVTEQE-----------KTERERREFVSNVSHELRTPLTSMR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L+L+ +D G  +L    +  N
Sbjct: 398 SYIEALSEGAWKD-EEVAPNFLKVTLDETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFN 456

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   E N +I+     +      D  +++Q+   I++NA+ +S  G 
Sbjct: 457 ELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGG 516

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           T+  +    + + I S+ + G  IP+     VF RF        R   G GLGL+I    
Sbjct: 517 TITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREV 576

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I  H G +   S +   +T    +
Sbjct: 577 IKAHRGAIWAESKEGKGSTFYISL 600


>gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1005

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 128/244 (52%), Gaps = 12/244 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  +A  +A + K+SF+ ++S+E+R+PL  IIG T L+   +   L++KQ  Y+  
Sbjct: 257 KDLAKARDAAEQASKAKSSFLANMSHEIRTPLNGIIGLTKLMLDLE---LSNKQKDYMRK 313

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++ND+LDL+ ++AG ++++    V   +   +      K+ E  + +   
Sbjct: 314 IDRSAKALLGILNDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEEKGLELFFE 373

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNN 726
            D ++      D  R+ Q+   ++SNA+ F+ +G  + +KA        +   +FSV++ 
Sbjct: 374 IDPEIPQHLTGDPLRIKQVLINLVSNAVKFTDEGE-IHIKAEVTEITDSDISILFSVRDT 432

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +  + +F  F        RR  G GLGL+I ++ +++ GG V++ S     +  
Sbjct: 433 GVGIPANELEKIFTAFTQVDETSTRRYEGTGLGLAITKNLVSMMGGTVTVESDINMGSIF 492

Query: 785 NCRI 788
           + ++
Sbjct: 493 SFKL 496


>gi|257142328|ref|ZP_05590590.1| sensory box histidine kinase [Burkholderia thailandensis E264]
          Length = 709

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 87/507 (17%), Positives = 196/507 (38%), Gaps = 33/507 (6%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S ++    +L H    L ++   +   D +  + F NR   E+  +    +   P    
Sbjct: 214 ASDDLFAQRELLHV--TLASIGDGVIATDVDGRITFFNRVAEEMTALAADAVVGQPIEQV 271

Query: 355 L-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----- 408
           L      +   +         ++ I ++          +    G  L V   + P     
Sbjct: 272 LTFRHALTQRVIDNPARVAVERKRIAAL-----PVHTRFVGRGGGELPVDGNAAPTFDAN 326

Query: 409 --RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G + +  +++ +           +     ++     + +   +G+I L N      
Sbjct: 327 GKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPNAMIMVNREGKIVLVNSQAEKF 379

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +      +  G  I  +     R  + +     F           + L G     S+  +
Sbjct: 380 FDYVRGDM-IGQGIDMLVPERFRAGHATHRGAFFGKPDARPMGAGRDLFGLRRDGSEFPV 438

Query: 527 EYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ P
Sbjct: 439 EIGLNPITTSEGAFVLCSITDITARKRAEHELRRRSEELARSNQDLEQFAYVASHDLQEP 498

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++    
Sbjct: 499 LRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDARQ 556

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            +    +L+E  ++++  + E+  +I      +L        +L+ +F  ++ NA+ F S
Sbjct: 557 PVDCERVLDEALRNLSAAIRESGAQIT---HDRLPIVHGIAAQLVLLFQNLIGNAIKFRS 613

Query: 704 KGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           K     + L+A   +  ++F V++NG  I     + +F  F     R +  G GLGL++ 
Sbjct: 614 KERIARIHLEADTRDDAWVFRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLALC 673

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  +  HGG +++ S     TT +  +
Sbjct: 674 KRIVEHHGGRIAVESEPGRGTTFSFAL 700


>gi|164686355|ref|ZP_02210385.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM
           16795]
 gi|164601957|gb|EDQ95422.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM
           16795]
          Length = 433

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 156/384 (40%), Gaps = 38/384 (9%)

Query: 424 DLETKYNTLVKVQGETID--------------HLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           +L   +N ++++   TI+               +S G+      G+I L N   + + K 
Sbjct: 66  ELSKNFNYMIQIMDSTIEEVEYKHLQLTSIVKSVSHGILAIDIKGKILLINDIAKEMLKC 125

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +      G + + +         +    + F   + S  +E       L L  + V    
Sbjct: 126 DIETNLEGINFKFVVG-------DKKILETFQKYVGSTQNEVI----ELNLKDNLVYRIK 174

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I P+    +    +    ++            L K + ++  FV +VS+EL++PLT+I G
Sbjct: 175 IDPVYLQDSKHAIIGSIINIE-------DITELVKLENMRKDFVANVSHELKTPLTSITG 227

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F + LK +     N++ + +++ I   S  L  L+ DIL L++++ G   L+Y  + L D
Sbjct: 228 FVETLKINDDIDKNTR-NHFLDIIEKESNRLKGLIEDILLLSSIENGQ-DLSYEKVKLFD 285

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +  EV +         NI I    + +       R  + QIF  ++ N + ++ K   + 
Sbjct: 286 VFKEVCEITEYIASSKNITISYNFEDEDVCIYGFRDNIKQIFLNLIDNGIKYTPKDGHIE 345

Query: 710 LKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           +    D    + I   K+NG  IP++    +F RF            G GLGL+I +  +
Sbjct: 346 VVQHYDENRQNIILEFKDNGIGIPKESLNRIFERFYRVDKARSRDIGGTGLGLAITKHMV 405

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
              GG++++ S     +     IP
Sbjct: 406 KSLGGNITVESILGIGSDFIVTIP 429


>gi|27367166|ref|NP_762693.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus
           CMCP6]
 gi|50401046|sp|Q8D5Z6|LUXQ_VIBVU RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|27358734|gb|AAO07683.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus
           CMCP6]
          Length = 857

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 160/398 (40%), Gaps = 30/398 (7%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F ++   ++    +  +  +   +  +     + V+   G +   NPA     
Sbjct: 331 NGSDILEFAHIGHTLENTFEQLESQRRSFQDLFNFALSPMMVWSESGLLIQMNPAAMKEL 390

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             E          ++ +    + +       L  A       +  +L G    + + +  
Sbjct: 391 GIE------HASPQDFSNPLFQLFKLKLSPHLKMAA------QGATLTGINVPIGEKIFR 438

Query: 528 YSIIPL----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ P+      +  ++   ++T  + AE+          ++ + +  F+  +S+E+R+P
Sbjct: 439 WNLSPIVVENGISGIIVQGQDITTLIDAEKQSNLARREAEQSAKTRADFLAKMSHEIRTP 498

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G   LLK S   + N KQ   V+ +  S   LL ++NDILD + ++ G   +   
Sbjct: 499 LNGILGIAQLLKRSVNDAENLKQ---VDVLCNSGEHLLAVLNDILDFSKIEQGKFNIKKR 555

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFS 702
                D LN ++        E  +  ++ +   L      D+ RL QI   ++SNA+ F+
Sbjct: 556 DFNFYDTLNTLENIYRPICREKGVSFEIHNQIPLDCQLHTDQVRLNQIMFNLISNAVKFT 615

Query: 703 SKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
             G  + +       A  ++      V + G  I E   +S+F  FV        +  G 
Sbjct: 616 PAG-RIEVSFKLEKFARSEHSILSIQVSDTGIGIDESKLESIFEPFVQADSLSTREYGGS 674

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+IV++ + +  G +S+ S     +T    IP ++
Sbjct: 675 GLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIPVEK 712


>gi|257882230|ref|ZP_05661883.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|261208377|ref|ZP_05923027.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6]
 gi|289566830|ref|ZP_06447240.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecium D344SRF]
 gi|293567712|ref|ZP_06679055.1| sensor protein YycG [Enterococcus faecium E1071]
 gi|294616678|ref|ZP_06696448.1| sensor protein YycG [Enterococcus faecium E1636]
 gi|294619189|ref|ZP_06698675.1| sensor protein YycG [Enterococcus faecium E1679]
 gi|294623109|ref|ZP_06701995.1| sensor protein YycG [Enterococcus faecium U0317]
 gi|257817888|gb|EEV45216.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|260077438|gb|EEW65157.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6]
 gi|289161361|gb|EFD09251.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecium D344SRF]
 gi|291589647|gb|EFF21452.1| sensor protein YycG [Enterococcus faecium E1071]
 gi|291590432|gb|EFF22171.1| sensor protein YycG [Enterococcus faecium E1636]
 gi|291594571|gb|EFF25962.1| sensor protein YycG [Enterococcus faecium E1679]
 gi|291597478|gb|EFF28643.1| sensor protein YycG [Enterococcus faecium U0317]
          Length = 611

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 147/384 (38%), Gaps = 24/384 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  +++         +      + H+++GV      G++   N    SL  
Sbjct: 236 GQLADTFNQLAERIEEAQDTMEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLD 295

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +    + G  I  +      Y       D    ++       +S Q  L       +++
Sbjct: 296 IKNEE-AIGQSILTLLDIEEEYTLRKLLEDPNEMVLDRSTSTLESDQMILR------VDF 348

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 349 SMIRRESGFISGLVAVLHDVTEQE-----------KTERERREFVSNVSHELRTPLTSMR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L+L+ +D G  +L    +  N
Sbjct: 398 SYIEALSEGAWKD-EEVAPNFLKVTLDETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFN 456

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   E N +I+     +      D  +++Q+   I++NA+ +S  G 
Sbjct: 457 ELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGG 516

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           T+  +    + + I S+ + G  IP+     VF RF        R   G GLGL+I    
Sbjct: 517 TITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREV 576

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I  H G +   S +   +T    +
Sbjct: 577 IKAHRGAIWAESKEGKGSTFYISL 600


>gi|325109823|ref|YP_004270891.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324970091|gb|ADY60869.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1194

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 119/672 (17%), Positives = 234/672 (34%), Gaps = 85/672 (12%)

Query: 184  KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
            + +     + +   + +S+   V   ++AG +++ N + +     E    Q+++   ++ 
Sbjct: 393  RERAARQTLELQASVLESMTEGVCVLNEAGLVIYRNRAERVLLGLEVDSEQESL--PQRP 450

Query: 244  FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY----KIVRVLNSFGEAGIAIDVSKEI 299
              +   + M    A      E+      G           V +        +  DV+   
Sbjct: 451  VCQIPAEAMPILEAHGTWEGESRYQRPDGRILILFARIAQVNMEGEQFFVRVHEDVTARR 510

Query: 300  TVNDQLTHTYEILHNLTVAI--AIFDQN---RYLQFHNRSFVELWEIDLAFL-ATNPSND 353
              +DQL  + E    L   I    +  +     L + + SF   W +D   L +++P   
Sbjct: 511  AADDQLHESEERFRQLAENIDDVFYIADVETGSLSYVSPSFKRTWGVDPTRLKSSDPLFS 570

Query: 354  ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRG-- 410
             +              +    +E++    +   T  +     P GQ   +   S P    
Sbjct: 571  AV-----------HPRDQDHVRESLQRRKRGEATVCEFRIFTPGGQLKWIRDRSFPIRDS 619

Query: 411  -----GTIWMFENLTVQVDLETKYNTLVKVQGET---ID--------------------- 441
                     + E++T +  +E     L +        ID                     
Sbjct: 620  AGHVARIAGVAEDMTERKRIELDLRFLSEASRSLSGLIDFESTLQVVASLAVPDFADWCL 679

Query: 442  -HLSE--------GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN-----IAATC 487
             H+++         VA   PD ++  +         + E+    G   R      +    
Sbjct: 680  VHIADSEGQMIPLAVAHVNPD-KVSEAIRVSEQFPPSSEDSAGAGRVFRTGKPEMLETIS 738

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
              +       D    I+ +F  E   +   L L  + +   S +   +A+          
Sbjct: 739  EDFLQAVAQNDKHLEILRAFQME-SYMSVPLTLRGEVLGVISFVTAESARRYKQADLDVA 797

Query: 548  SVRAERAL-----TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
               A RA            L+ AD  K+ F+  +++ELR+PL  I    DLL+      +
Sbjct: 798  VDLAHRAAVAIDNARLYSDLKDADRRKDEFLAMLAHELRNPLAPIRSGLDLLR------I 851

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              ++ + +E ++     L+ LV+D+LD++ +  G ++L    + L +L+     ++  + 
Sbjct: 852  GEQRPEVLELMNNQLQHLVRLVDDLLDVSRILRGKVELRKEQVELRELITRTVDAVNDQF 911

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               N  + V           D  RL Q+   +LSNA  ++     V +   R       S
Sbjct: 912  TSRNQELTVRLPDAACWLNGDSVRLSQVIHNLLSNASKYTPPDGKVSISLERTERFLRIS 971

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-E 779
            V+++G  I   +   VF  F          + G+G+GL++V+S I LHGG VS  S    
Sbjct: 972  VRDSGIGIDSKLLPHVFELFTQAERSIDRSQGGLGIGLTVVKSLIELHGGTVSARSKGKG 1031

Query: 780  GVTTINCRIPSK 791
              +    R+P +
Sbjct: 1032 KGSEFRIRLPVR 1043



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/432 (12%), Positives = 143/432 (33%), Gaps = 41/432 (9%)

Query: 145 AETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
            +      +  +G++ G    L    +   ++ L        +       F+ + +S   
Sbjct: 242 IDDSASPILDDDGKLLG--IILIFRDITEQHAWLNRLEESENR-------FRNVVESRMI 292

Query: 205 LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE 264
            +   +  G+I  AN    +         ++     R L  EE +++   +         
Sbjct: 293 GIGFWNATGEITDANDLLLEMIGYSRQDLEQNKISWRDLTPEEFREKDERALKENNEQGF 352

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGI----------AIDVSKEITVNDQLTHTYEILHN 314
           +    +   +KS +  R+    G + +           +D+++E      L     +L +
Sbjct: 353 STPYEKEWIHKSGQ--RIPILIGSSCLPGEEVRGSFWVLDMTRERAARQTLELQASVLES 410

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +T  + + ++   + + NR+   L  +++     +     + +    A  +P      TW
Sbjct: 411 MTEGVCVLNEAGLVIYRNRAERVLLGLEVDSEQESLPQRPVCQI--PAEAMPILEAHGTW 468

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHV---IVTSNPRGGTIWM--FENLTVQVDLETKY 429
           +                +  P+G+ L +   I   N  G   ++   E++T +   + + 
Sbjct: 469 EGESR------------YQRPDGRILILFARIAQVNMEGEQFFVRVHEDVTARRAADDQL 516

Query: 430 NTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           +   +   +  +++ +   +   + G +   +P+F+  W  +  RL     + +      
Sbjct: 517 HESEERFRQLAENIDDVFYIADVETGSLSYVSPSFKRTWGVDPTRLKSSDPLFSAVHPRD 576

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           + +             T  +    +  G L+ + D            A+      ++T+ 
Sbjct: 577 QDHVRESLQRRKRGEATVCEFRIFTPGGQLKWIRDRSFPIRDSAGHVARIAGVAEDMTER 636

Query: 549 VRAERALTEKNE 560
            R E  L   +E
Sbjct: 637 KRIELDLRFLSE 648



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 60/428 (14%), Positives = 133/428 (31%), Gaps = 40/428 (9%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TE 229
           +  +  E+    L  + L       K    S+   V   D  G +   N   ++ T   +
Sbjct: 128 IAQLTEEVTRRRLSERNLRRERERLKTTLASIGDAVIVTDPEGRVTMMNGVAERLTGWNQ 187

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV-----STLEHGNNKSYKIVRVLN 284
                + +    ++  E  +  + +  A        V     + L     + + I    +
Sbjct: 188 KEANTQPLTSVFRIINETTRATVENPVAKVIATGAVVGLANHTILISRTGEEWPIDDSAS 247

Query: 285 SF--------GEAGIAIDVSKE----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
                     G   I  D++++      + +       ++ +  + I  ++    +   N
Sbjct: 248 PILDDDGKLLGIILIFRDITEQHAWLNRLEESENRFRNVVESRMIGIGFWNATGEITDAN 307

Query: 333 RSFVELWEIDLAFLATNP--SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
              +E+       L  N     D   E  R         + +  KEN    +  S  ++ 
Sbjct: 308 DLLLEMIGYSRQDLEQNKISWRDLTPEEFRE-------KDERALKENNEQGF--STPYEK 358

Query: 391 TWHLPNGQTLHVIVTSN--PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            W   +GQ + +++ S+  P       F  L   +  E      +++Q   ++ ++EGV 
Sbjct: 359 EWIHKSGQRIPILIGSSCLPGEEVRGSFWVL--DMTRERAARQTLELQASVLESMTEGVC 416

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           V    G +   N A R L   E +        R +    +      +    +       +
Sbjct: 417 VLNEAGLVIYRNRAERVLLGLEVDSEQESLPQRPVCQIPAEAMPILEAHGTWEG-----E 471

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              +   G + +L   + + ++        +    +VT    A+  L E  E  R+  E 
Sbjct: 472 SRYQRPDGRILILFARIAQVNM--EGEQFFVRVHEDVTARRAADDQLHESEERFRQLAEN 529

Query: 569 KNSFVQHV 576
            +      
Sbjct: 530 IDDVFYIA 537



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 85/344 (24%), Gaps = 45/344 (13%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           + L DSL        + G +L  N + K           + + E      E+++  + + 
Sbjct: 7   QALLDSLPDATLLVSRNGIVLACNRAAKTLLSASSDPTGQPLHELWNETAEQVEALLRTF 66

Query: 256 SALEKNFCETVSTLEH----------GNN--------------KSYKIVRVLNSFGEAGI 291
           S         +               G+               +       L  F     
Sbjct: 67  SQASHAVPGKLRLSGDSGIEQTVQCYGSRLAVAEDSAEDQIVLRLVPPKEALQQFSVLNE 126

Query: 292 AIDVSKEITVNDQLTHTY---------EILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            I    E     +L+              L ++  A+ + D    +   N     L   +
Sbjct: 127 KIAQLTEEVTRRRLSERNLRRERERLKTTLASIGDAVIVTDPEGRVTMMNGVAERLTGWN 186

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
                T P          +     E    K               +        G+   +
Sbjct: 187 QKEANTQPLTSVFRIINETTRATVENPVAKVIATGAV----VGLANHTILISRTGEEWPI 242

Query: 403 IVTSNP----RG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
             +++P     G   G I +F ++T Q     +           ++    G+  +   G 
Sbjct: 243 DDSASPILDDDGKLLGIILIFRDITEQHAWLNRLEESENRFRNVVESRMIGIGFWNATGE 302

Query: 456 IKLSNPAFRSLWKTEENRL-SPGTHIRNIAATCSRYYNESDGWD 498
           I  +N     +       L       R++     R  +E    +
Sbjct: 303 ITDANDLLLEMIGYSRQDLEQNKISWRDLTPEEFREKDERALKE 346



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 98/304 (32%), Gaps = 50/304 (16%)

Query: 47  QRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIG--------Q 98
            R   A++  E  + + E          +   N    +++  + E   ++G         
Sbjct: 392 TRERAARQTLELQASVLESMT-----EGVCVLNEAGLVIYRNRAER-VLLGLEVDSEQES 445

Query: 99  LHQR--IDIPQTDTDLL-SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           L QR    IP     +L +   W     Y +       L                     
Sbjct: 446 LPQRPVCQIPAEAMPILEAHGTWEGESRYQRPDGRILILFAR----------------IA 489

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGD 214
           +  + G   F+R      ++ ++        +L      F+ L +++D + +  D + G 
Sbjct: 490 QVNMEGEQFFVR------VHEDVTARRAADDQLHESEERFRQLAENIDDVFYIADVETGS 543

Query: 215 ILWANISYKKN--TETEGIVFQKAIGESRKLFKEE-IKKRMISSSALEKNFCETVSTLEH 271
           + + + S+K+    +   +     +  +     ++ +++ +      E   CE       
Sbjct: 544 LSYVSPSFKRTWGVDPTRLKSSDPLFSAVHPRDQDHVRESLQRRKRGEATVCEFRIFTPG 603

Query: 272 GN-----NKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN 325
           G      ++S+ I          AG+A D+++   +   L    E   +L+  +  F+  
Sbjct: 604 GQLKWIRDRSFPIRDSAGHVARIAGVAEDMTERKRIELDLRFLSEASRSLS-GLIDFEST 662

Query: 326 RYLQ 329
             + 
Sbjct: 663 LQVV 666


>gi|225028824|ref|ZP_03718016.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353]
 gi|224953845|gb|EEG35054.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353]
          Length = 639

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 123/258 (47%), Gaps = 7/258 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  +++     + +  L +  E   +A+  K++F+ ++S+E+R+P+  ++G  +++   
Sbjct: 176 GVAMYLHFRIYKKQQVFLMQAREEAMEANRAKSTFLANMSHEIRTPINVMLGMNEMILRE 235

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              S + +  QY + +  +   LL+L+N+ILD+  +++  + +      L  L+ EV   
Sbjct: 236 ---SESREVVQYAKSVEKAGNYLLSLINNILDITRIESKKLDIIEEKFSLRQLVQEVCLI 292

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            A +    N+   V  +  L  ++  D   + Q+   +++NA+ ++ KG  V LK  ++ 
Sbjct: 293 GAKQAEAKNLEFVVDVEETLPKYLEGDALHIKQVILNLINNAVKYTKKG-KVFLKVCQEE 351

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSI 774
               FSVK+ G  I ++  +++F+ F+           G GLGL+I +      GGH+  
Sbjct: 352 KQISFSVKDTGIGIKKEDMEALFDMFMRADIKRHRNIEGSGLGLTIAKELCEQMGGHIQA 411

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     +      P K+
Sbjct: 412 ESIYGKGSNFTVYFPLKD 429


>gi|217967622|ref|YP_002353128.1| PAS/PAC sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336721|gb|ACK42514.1| PAS/PAC sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
          Length = 350

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 151/355 (42%), Gaps = 28/355 (7%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           +++  G+ +   DG +  +N   + L+  + N  +    I  I         + +  DL+
Sbjct: 15  ENVQLGILIVDKDGVVVFANNKIKELFDIQNNSKNNRKLIELI--------PDYEIDDLY 66

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              + S    + SL           LE     L   Q +L  +N                
Sbjct: 67  KKTLESKTYNKTSLN--FWGKEKKYLEVEAFYLSGNQEVLLIINDY-------------T 111

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L + +E    F+ + S+ELR+PLT+I    DL    K+ +L+   +++  ++      +
Sbjct: 112 PLHRMEENFKEFLGNASHELRTPLTSIQILIDLFSEKKI-TLDEIYNEFFPHLRKEVERM 170

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV+++L+L+ ++AG++ L    + L +++ EV   +   + + N+ + +    KL   
Sbjct: 171 SKLVSNLLNLSRLEAGVIDLQLKEVNLTEIVMEVIDRLTPHISKKNLEVNLKIPEKL-VI 229

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD Q L  I   I+ NA+ ++ +G  + +    +  + I  +++ G  IPE     +F+
Sbjct: 230 NADPQHLDTIVFNIVENAVKYTPQGGLIEIGVNENEDNVILWIRDTGIGIPEKDLNRIFD 289

Query: 741 RFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF   +           GLGLSIV+  I  HG  + + S     T     IP ++
Sbjct: 290 RFYRVSKSRTNEDGFSTGLGLSIVKKLIERHGWTIRVESKVNKGTKFEIIIPKRK 344


>gi|148359459|ref|YP_001250666.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
 gi|148281232|gb|ABQ55320.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
          Length = 910

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 14/315 (4%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A   R   +    +    I  S   E   ++     L    L  ++  L +   + T  
Sbjct: 211 IARLRRSMKQILSNEFETEIRVSSPGELGIIEKGCAHLQRQYLN-TVRDLNHHIEIATAD 269

Query: 544 NVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                   E     L+ + +   +    K+ F+ ++S+E+R+P+  +IGFT++L  SKL 
Sbjct: 270 LQQSLELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLD 329

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  YV+ I +S+  LL+++NDILD + +DAG + L+   + +   ++EV    + 
Sbjct: 330 PL---QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASP 386

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
             H+  I +  I+D  +    + D  R+ QI S +++NA+ F+  G   +  K  ++   
Sbjct: 387 NAHKKGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDK 446

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
               +F++ + G  I  +    +F  F         +  G GLGL I +       G +S
Sbjct: 447 DYTLLFTITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRIS 506

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T + RI
Sbjct: 507 LTSEINKGSTFSARI 521


>gi|302872938|ref|YP_003841571.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|307686548|ref|ZP_07628994.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|302575795|gb|ADL49807.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
          Length = 1028

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 6/245 (2%)

Query: 550 RAERALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + E  L ++    E L K D++K+ F+ + S+ELR+PL  II  T+ + +   G +N  Q
Sbjct: 427 QLEDMLNKEKTLTEKLTKLDKLKDEFLANTSHELRTPLNGIINMTEAVLSGAEGYVNDMQ 486

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  + +S   L NLVNDILD++ +    ++LN  T     L+  V            
Sbjct: 487 RRNLSLVVSSGKRLNNLVNDILDMSRLKYKDIRLNRKTYDAKKLIFSVVNIFEYIKPNKQ 546

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +RI++  + KL   + D  R  QI   I+ NAM F+ KG  + +   R +      +++ 
Sbjct: 547 VRIELSIEEKLPFILVDEDRFNQILFNIIGNAMKFTHKG-KIAVSTERIDNFVEIRIEDT 605

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ED    ++N F         +  G+GLGLSI ++ + LHGG +++ S     T  
Sbjct: 606 GIGISEDKLDQIWNAFEQIDASITRKYGGMGLGLSITKNLVELHGGSINVESQINKGTIF 665

Query: 785 NCRIP 789
              +P
Sbjct: 666 RFTVP 670



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 82/240 (34%), Gaps = 52/240 (21%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               E      +IK  F+ +V       +  I+     L        +    ++  Y+ +S
Sbjct: 833  FDMEMAFLQAQIKPHFLFNV-------INTIVA----LCDDNPEEASELLIEFSSYLRSS 881

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
                        D   ++   + L        + +N   +    +  E  + I+   D  
Sbjct: 882  -----------FDFRNLEQ-AIALEKE----IEYVNSYLKLEKARFGEK-LTIEFDIDDS 924

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFS----SKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            + + +        +   ++ NA+       S+G TV L     NG+   SVK++G  I +
Sbjct: 925  IKAKI--PPL---VIQPLVENAVKHGVMKKSEGGTVRLSIKETNGEINVSVKDDGVGISK 979

Query: 733  DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG---GH-VSISSSDEGVTTINCRI 788
            D+ + +    + N  + +  G       V++         G  + I+S++   T I   I
Sbjct: 980  DILQGI----LKNDSKRRSVG-------VKNIDKRLKRISGRGLQINSNEGEGTEIQFSI 1028


>gi|172035136|ref|YP_001801637.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171696590|gb|ACB49571.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 835

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/408 (22%), Positives = 162/408 (39%), Gaps = 44/408 (10%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT---EENRLSPGTHIRN 482
           + +  +   +  E ++ L   V +    G I   N  +R         +N  +       
Sbjct: 154 QQELASAKNLIKELLEELPLPVMLQTHQGEIIQQNRTWREQIGELLPPDNATACPLPHET 213

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSL-----------------QGTLELLSDSV 525
           +    ++  +     DL   + +  D                             + +  
Sbjct: 214 MNRLENKKMSSEHNDDLNHKMASITDMACDQWLNPPTDNWDFPLSSLPNDSPESFVDEDS 273

Query: 526 LEYSIIPLPNAQTMLTFVNVT-------------------DSVRAERALTEKNEALRKAD 566
           L+    P+P+   +  F+                         +  + L  KN  L + +
Sbjct: 274 LDIQPSPIPDQDKVWQFIKCPLTTDKLPIPISIFVATDVTQQQQLCQELAAKNADLVQLN 333

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K+ F+  +S+EL+SPLT ++G + LL+  K+G LN +Q  Y + I  S   L+ LVND
Sbjct: 334 RLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGDLNPRQVHYAQLIYRSGRQLMTLVND 393

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH---ENNIRIKVISDGKLGSFVAD 683
           +LDL  ++ G +KL++S + + ++ +    SIA K     +  +   +  +  L   +AD
Sbjct: 394 LLDLTRLETGQLKLSFSPVNIQEICHRAYHSIAEKYKGKSDKPLDFSLDIEVGLHQLLAD 453

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+   +L NAM F+  G    LK +R      F+V + G  IPE+    +F +F 
Sbjct: 454 ELRLHQMLVHLLDNAMKFTQTGGKFGLKVSRWEDWLAFTVWDTGIGIPEESQHLIFQKFQ 513

Query: 744 SNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +    Q  G GLGL + +     HGG +S  S     +     +P
Sbjct: 514 QLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSKAGQGSQFTLLLP 561


>gi|229528414|ref|ZP_04417805.1| sensor protein TorS [Vibrio cholerae 12129(1)]
 gi|229334776|gb|EEO00262.1| sensor protein TorS [Vibrio cholerae 12129(1)]
          Length = 984

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRI 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFWFTLPL 691


>gi|313149369|ref|ZP_07811562.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138136|gb|EFR55496.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 398

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 7/253 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +LT  ++T     E AL E  E    AD  K++F+ ++S+E+R+PL  I+GF++LL   
Sbjct: 1   MVLTVHDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLA-- 58

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +   ++ +Y+E +  +S +LL LVNDILDL+ ++AG ++  YS + +N LL +++Q 
Sbjct: 59  -AATEEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQL 117

Query: 658 IATKM-HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
              K+ +++ ++I   +        +DR R+ Q+ S  +SNA+ F+++GS + +      
Sbjct: 118 FHMKIGYDSPVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTEGS-IRIGYKPCE 176

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F V + GS I  D    VF+RFV    +  + G GLGLSI ++ +N  GG +   S
Sbjct: 177 NGLRFYVTDTGSGISADKLGGVFDRFVRL--QSDKNGTGLGLSICKTIVNKLGGEIGAES 234

Query: 777 SDEGVTTINCRIP 789
                +T    +P
Sbjct: 235 VVGQGSTFWFTLP 247


>gi|189467629|ref|ZP_03016414.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
 gi|189435893|gb|EDV04878.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
          Length = 534

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 166/383 (43%), Gaps = 30/383 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWK---TEENRLSPG 477
            + + +        G  ++++   + V  F     +  +N +  + +      E +    
Sbjct: 167 REYKEREVRASNTLGSIMNNMGVDIYVNSFDSHD-MLYANASMAAPYGGIRHFEGKKCWQ 225

Query: 478 THIRNIAATCS----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
               +    C     R+  + +G       + S+D +R   +    + S      +  P 
Sbjct: 226 ALYTDKTGECEFCPKRHLIDENGQP---TRVYSWDYQRPFDKCWFRVFS------AAFPW 276

Query: 534 PNAQT--MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            + Q   ++T V++    + E  L    E     D +K++F+ ++S+E+R+PL  I+GF 
Sbjct: 277 IDGQMAHVITSVDIDHQKKIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFA 336

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L          ++  Y+E +  ++ +LL L++DILDL+ ++AG +  N   + + D  
Sbjct: 337 SMLVEE---DDKKERQGYIEIMQENTELLLQLISDILDLSKIEAGTLDFNMGYLNIKDFC 393

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            ++ +    K  +  + + + S+        D++RL+Q+ +  ++NA+ F+S+G  + L+
Sbjct: 394 EDILRGYEIK-EDKPVPVLLASNLPDYRIYTDKKRLMQVVTNFINNALKFTSEG-QITLE 451

Query: 712 A--ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
                D  +  FSV + G  I  D    VF+RFV        +G GLGLSI  S I   G
Sbjct: 452 YHFKEDTNEIEFSVTDTGIGIAPDAVGQVFDRFVKLNTFS--KGTGLGLSICRSIIEHLG 509

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S     +      P  E
Sbjct: 510 GTIGLESEVGVGSRFWFTHPCAE 532


>gi|257885425|ref|ZP_05665078.1| histidine kinase [Enterococcus faecium 1,231,501]
 gi|257821281|gb|EEV48411.1| histidine kinase [Enterococcus faecium 1,231,501]
          Length = 611

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 147/384 (38%), Gaps = 24/384 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  +++         +      + H+++GV      G++   N    SL  
Sbjct: 236 GQLADTFNQLAERIEEAQDTMEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAISLLD 295

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +    + G  I  +      Y       D    ++       +S Q  L       +++
Sbjct: 296 IKNEE-AIGQSILTLLDIEEEYTLRKLLEDPNEMVLDRSTSTLESDQMILR------VDF 348

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K +  +  FV +VS+ELR+PLT++ 
Sbjct: 349 SMIRRESGFISGLVAVLHDVTEQE-----------KTERERREFVSNVSHELRTPLTSMR 397

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L+L+ +D G  +L    +  N
Sbjct: 398 SYIEALSEGAWKD-EEVAPNFLKVTLDETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFN 456

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L+N V       +   E N +I+     +      D  +++Q+   I++NA+ +S  G 
Sbjct: 457 ELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGG 516

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           T+  +    + + I S+ + G  IP+     VF RF        R   G GLGL+I    
Sbjct: 517 TITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREV 576

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I  H G +   S +   +T    +
Sbjct: 577 IKAHRGAIWAESKEGKGSTFYISL 600


>gi|159901363|ref|YP_001547610.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894402|gb|ABX07482.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 884

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 175/397 (44%), Gaps = 38/397 (9%)

Query: 415 MFENLTVQ-VDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           ++E L  + + L T      +V       +  L++ V VF  D  I L+N A  S+    
Sbjct: 500 LYEYLAERTIKLSTMLRHQEEVSSQNNAILQSLNDAVIVFNLDRNIILANAAAESILDRP 559

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            + L   +    + +   +   +  G  L     T         QG +   +   +  ++
Sbjct: 560 LDELVTQSFDELLESLNIKLPGDPLGAVLNNPDATQ-------TQGIIIKRATQSISVTL 612

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +P+   +  L    +                  ++D +K  F+  VS+ELR+P+T+I G+
Sbjct: 613 VPVMTERGELLGACLIGRDITRE---------VESDRLKTEFIGTVSHELRTPMTSIKGY 663

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T LL    LG +NS Q +++  I+ +S  ++ ++ND+LD+  ++ G ++L  + +++ D+
Sbjct: 664 TQLLAMGSLGEVNSTQKEFLNTIAHNSERMIAIINDLLDITKIETGSVELQMARLMVADV 723

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++ V  +   ++ +      +     L +  +D +R+ Q+ S +LSNA+ ++  G  + +
Sbjct: 724 MSSVVGNARAEITQRQQEFSLSLAPNLPTIWSDMERIRQVASNVLSNAIKYTPNGGKISV 783

Query: 711 KAARDN----------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRR 752
           KA   N                     +V+++G  I     + VF+RF    +  + +  
Sbjct: 784 KAFEINFNDIPNKQREGLQVGRRYIALAVQDSGVGIDPSEHEKVFDRFYRTENPLKIEAG 843

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGLS+V   I L GG + + S+    TT    +P
Sbjct: 844 GTGLGLSLVRPLIQLMGGRIWLESAVNQGTTFTFIMP 880



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL +L  A+ +F+ +R +   N +   + +  L  L T  S DELLE L    KLP    
Sbjct: 528 ILQSLNDAVIVFNLDRNIILANAAAESILDRPLDELVTQ-SFDELLESL--NIKLPGDPL 584

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
                    +  +     + T  +     + V+       G   +  ++T +V+ + 
Sbjct: 585 GAVLNNPDATQTQGIIIKRATQSISV-TLVPVMTERGELLGACLIGRDITREVESDR 640


>gi|77458871|ref|YP_348377.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77382874|gb|ABA74387.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 1163

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 152/339 (44%), Gaps = 5/339 (1%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G I  S  A R   + +E           +          ++  +  + I+       ++
Sbjct: 381 GNIGTSIEAARYRQRLQEVLAETQQLNEELQVQQEELKTANEELEEQSRILKESQAHLET 440

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            Q  LE  ++ + E +       Q        T+  +A+  L E+ E L+++ + K+ F+
Sbjct: 441 QQVELEQTNEQLAEQAQTLAE--QRDAMDQKNTELNQAQVQLEERAEELQRSSKYKSEFL 498

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PL + +    LL  +   +L+++Q ++ E I ++   LLNL+NDILD++ V
Sbjct: 499 ANMSHELRTPLNSSLILAKLLAENPQENLSAEQVKFAESIYSAGNDLLNLINDILDISKV 558

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           +AG +++      +  L + ++           +   V        +   DRQRL Q+  
Sbjct: 559 EAGKLEVMPENTSVARLADGLRGMFEPLAAVKQLAFSVQLQPDAPSTLFTDRQRLEQVIK 618

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            +LSNA+ F+  G+  +  A + +    F V+++G  I  D  +S+F  F        R 
Sbjct: 619 NLLSNAVKFTEHGTVSLTIAGQPDDRIAFIVRDSGIGIAADQQESIFEAFRQADGTTNRK 678

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGLSI      L GG +S+SS+    +     +P
Sbjct: 679 YGGTGLGLSISRDLATLLGGSISVSSAPGQGSVFTLVLP 717


>gi|330967781|gb|EGH68041.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 775

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 146/368 (39%), Gaps = 6/368 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G +   N     +    E  +        
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVF 318

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 319 YLPQECPQHPDMALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKIT 378

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 379 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 437

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++   
Sbjct: 438 ---QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 494

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI ++ +         +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 495 ADGNIELEELPHLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++    
Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEG 614

Query: 782 TTINCRIP 789
                 +P
Sbjct: 615 CRFTLALP 622


>gi|167615791|ref|ZP_02384426.1| sensory box histidine kinase [Burkholderia thailandensis Bt4]
          Length = 709

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/507 (17%), Positives = 196/507 (38%), Gaps = 33/507 (6%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            S ++    +L H    L ++   +   D +  + F NR   E+  +    +   P    
Sbjct: 214 ASDDLFAQRELLHV--TLASIGDGVIATDVDGRITFFNRVAEEMTALAADAVVGQPIEQV 271

Query: 355 L-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----- 408
           L      +   +         ++ I ++          +    G  L V   + P     
Sbjct: 272 LTFRHALTQRVIDNPARVAVERKRIAAL-----PVHTRFVGRGGGELPVDGNAAPTFDAN 326

Query: 409 --RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G + +  +++ +           +     ++     + +   +G+I L N      
Sbjct: 327 GKLVGAVLVVRDVSERE-------RAEERFRLAVEAAPNAMIMVNREGKIVLVNSQAEKF 379

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +      +  G  I  +     R  + +     F           + L G     S+  +
Sbjct: 380 FDYVRGDM-IGQGIDMLVPERFRAGHATHRGAFFGKPDARPMGAGRDLFGLRRDGSEFPV 438

Query: 527 EYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           E  + P+     A  + +  ++T   RAE  L  ++E L ++++    F    S++L+ P
Sbjct: 439 EIGLNPITTSEGAFVLCSITDITARKRAEHELRRRSEELARSNQDLEQFAYVASHDLQEP 498

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  + G   LL+    G L+++  +++ +    +T + +L++D+L  + V  G ++    
Sbjct: 499 LRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDARQ 556

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            +    +L+E  ++++  + E+  +I      +L        +L+ +F  ++ NA+ F S
Sbjct: 557 PVDCERVLDEALRNLSAAIRESGAQIT---HDRLPIVHGIAAQLVLLFQNLIGNAIKFRS 613

Query: 704 KGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           K     + L+A   +  ++F V++NG  I     + +F  F     R +  G GLGL++ 
Sbjct: 614 KERIARIHLEADTRDDAWVFRVRDNGIGIDPQYFERIFLIFQRLHTRREYPGTGLGLALC 673

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  +  HGG +++ S     TT +  +
Sbjct: 674 KRIVEHHGGRIAVESEPGRGTTFSFAL 700


>gi|158337336|ref|YP_001518511.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158307577|gb|ABW29194.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 638

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 159/388 (40%), Gaps = 26/388 (6%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I+ F ++  +++  + +    +  Q   ++ L    ++G  +   D  + L+NP  R
Sbjct: 244 GELIFSFNDMAERLERYQEQNIEELTAQKAKLETLVSTIADGAVLLDTDLAVILANPTAR 303

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+  +   +S     +N+               L+ +       E +         +  
Sbjct: 304 RLFNWDSEVVS-----KNVLNHLPEPVQIELTRPLYQSAAGQEGSEFRITLTGPTPRTVR 358

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +L  +++     +     + V D  R             + +E K+ F+ ++S+ELR+PL
Sbjct: 359 ILLTTVLDQQREKVKGIAMTVQDITR-----------EVELNEAKSQFISNISHELRTPL 407

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  F + L           + ++++  +  +  L  LVND+LDL+ +++G  +  +  
Sbjct: 408 FNIKSFIETLHDYGDDLSAEDRQEFLDTANRETDRLTRLVNDVLDLSRLESGK-QYRFEA 466

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L   + +  ++      +  I +       L     +   LLQ+ + ++ NA+ F+ K
Sbjct: 467 VDLLQPVEQTLRTYQLTARDQGIELSHDIQANLSPIWGNYDLLLQVLTNLIGNALKFTLK 526

Query: 705 GSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSI 760
           G  V+++A   A         V + G  I  D   ++F+RF    +R     G GLGLSI
Sbjct: 527 GGKVMIRAYPLAEHTNQVRVEVADTGIGIEPDDQAAIFDRFYRVENRVHTLEGTGLGLSI 586

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
           V + ++ H   V++ S     TT    +
Sbjct: 587 VRNILDKHHASVNLISESGVGTTFWFDL 614



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 94/305 (30%), Gaps = 66/305 (21%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +  Q      ++  +     + D +  +   N +   L+  D   ++ N  N      
Sbjct: 266 EELTAQKAKLETLVSTIADGAVLLDTDLAVILANPTARRLFNWDSEVVSKNVLNH----- 320

Query: 359 LRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTSNPR------GG 411
                 LPE +  +  +    S   +     + T   P  +T+ +++T+          G
Sbjct: 321 ------LPEPVQIELTRPLYQSAAGQEGSEFRITLTGPTPRTVRILLTTVLDQQREKVKG 374

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
                +++T +V+       L + + + I ++S        + R  L N           
Sbjct: 375 IAMTVQDITREVE-------LNEAKSQFISNISH-------ELRTPLFN----------- 409

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                   I++   T   Y     G DL A     F D        L  L + VL+ S  
Sbjct: 410 --------IKSFIETLHDY-----GDDLSAEDRQEFLDTANRETDRLTRLVNDVLDLS-- 454

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                              A   L    + LR            +S+++++ L+ I G  
Sbjct: 455 --------RLESGKQYRFEAVDLLQPVEQTLRTYQLTARDQGIELSHDIQANLSPIWGNY 506

Query: 592 DLLKT 596
           DLL  
Sbjct: 507 DLLLQ 511


>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1559

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 10/252 (3%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
              +    +  R L         A + K++F+ ++S+E+R+P+  ++G T L+  +    L
Sbjct: 870  QMLYAETQQRRELEVARHQAELASKTKSAFLANMSHEIRTPMNAVLGMTGLMLET---PL 926

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            NS+Q  ++E I  S   LL+L+N+ILDL+ ++AG M L      L+  L EV + +A   
Sbjct: 927  NSEQQDFIETIRISGDALLSLINEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSA 986

Query: 663  HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
            H   + I  +I          D  RL QI   ++SNA+ F+S G  V+       +    
Sbjct: 987  HNKGLEIAALIYPNVPTQLQGDAGRLRQILMNLISNAIKFTSNGEVVVRAELRSLSSTTA 1046

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               F++ + G  I  +    +F  F  V  ++  +  G GLGL+I +  ++L GG + + 
Sbjct: 1047 TIYFAITDTGLGITFEDQCRLFTPFTQVDASNTRKYGGTGLGLAICKQLVSLMGGEIGVE 1106

Query: 776  SSDEGVTTINCR 787
            S     +     
Sbjct: 1107 SRLGKGSKFWFE 1118



 Score = 40.7 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 20/159 (12%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E T+N +      +L   +  + + D    +   N++  +        +      +  L 
Sbjct: 393 EETLNQERNFISAVLDTASALVIVLDTQGQIVRFNQACEQTTGYSFDEVRGRHFWNLFL- 451

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------- 409
                  +PEQ+             ++ + +++ W   +G +L +I  +N          
Sbjct: 452 -------IPEQVEPVKAVFEQLRTGEAPKEYENYWVAKDG-SLRLISWANAILQDHEGCV 503

Query: 410 GGTIWMFENLT---VQVDLETKYNTLVKVQGETIDHLSE 445
              +    +++    ++ L  +    +K Q  T   L+E
Sbjct: 504 EYIVATGIDISDAYDELRLRKRAEQHLKAQYSTTRVLAE 542



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 3/111 (2%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           +++  +  +   E   N         +D  S  V V    G+I   N A         + 
Sbjct: 381 FIYREVKERKLTEETLNQERNFISAVLDTASALVIVLDTQGQIVRFNQACEQTTGYSFDE 440

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFA--AIITSFDDERKSLQGTLELLS 522
           +  G H  N+     +       ++          +++   +  G+L L+S
Sbjct: 441 VR-GRHFWNLFLIPEQVEPVKAVFEQLRTGEAPKEYENYWVAKDGSLRLIS 490


>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 921

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 12/249 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L    EA   A + K+ F+  +S+E+R+P+  ++G T+LL  S    LN +Q  + E 
Sbjct: 257 EELLRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDS---GLNHEQRHFAEA 313

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL ++NDILD + +++G ++L      L DLL +     A    +  + +   
Sbjct: 314 VENSGRHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKKRLELIAD 373

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727
              ++   V  D  RL QI   + +NA+ F+ +G  V+    L    D      SV++ G
Sbjct: 374 LPPEVRRCVRGDPFRLRQIVGNLANNAIKFTERGEVVVRARLLGEGTDGYRLRISVEDTG 433

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP    + +F +F        R   G GLGL+I    + L GG + + S        +
Sbjct: 434 IGIPPHAQQKIFEQFSQLDGSTTRQFGGTGLGLAICRRLVGLMGGEIGVDSRPGAGACFH 493

Query: 786 CR--IPSKE 792
               +P+ +
Sbjct: 494 IDLCLPAGQ 502


>gi|121535984|ref|ZP_01667777.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121305444|gb|EAX46393.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 583

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 109/240 (45%), Gaps = 1/240 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + E    L + D+++  FV +VS+ELR+PLT + G+   L+   +    +   +Y   
Sbjct: 343 QDMEEYVRRLEQLDKMRRDFVANVSHELRTPLTIMHGYNQALQDGTITD-PALVKKYHRV 401

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L  L+ D+LDL+ + A  + L+   + L ++++ V   +  +  E  + +   
Sbjct: 402 MGEEIMRLEKLIADLLDLSQLQANGLTLDIEEVSLAEIVDNVVTLLKPRSEEKGVSLAAC 461

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               +     D  RL Q+   ++ NA+ F+  G  + +     +G+ + +V + G+ I  
Sbjct: 462 VAPGVPPIQGDGDRLTQLALILVDNALKFTPPGGRISIDLTVQDGEEVLTVADTGTGIAP 521

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +    ++ RF          G GLGL+I    I LHG  V ++S     T    R P ++
Sbjct: 522 EDLPYIWERFYKGDKSRASSGTGLGLAIARQIIELHGAKVDVTSRCGEGTVFTIRFPLEK 581


>gi|325273993|ref|ZP_08140152.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp.
           TJI-51]
 gi|324100882|gb|EGB98569.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp.
           TJI-51]
          Length = 593

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 152/372 (40%), Gaps = 24/372 (6%)

Query: 422 QVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +    T  + L+   +     +D + +G+ +    GR++  NP  +      +       
Sbjct: 241 RKHQATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWND------- 293

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537
               + ++ +      +       ++     +R      +E+  +  +L YS+ P+ + Q
Sbjct: 294 --SRVGSSLAEALQRPELEQQLRQVLRGGSLDRPPDDLNMEVDEESRLLTYSLTPVSHPQ 351

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    +      E+            + +++ FV   S+ELR+P+T +     LL+  
Sbjct: 352 GPILGAVMVLHDVTEQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLRER 402

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 ++++  +E I      L  L+ND+L+ +   +G+ KL  +   +++L+   +  
Sbjct: 403 VKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDELVERAQLR 462

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +A +     I +    +  L    AD  +L ++   +L NA+  + KG  + L A R   
Sbjct: 463 VADQAAHKQIELVSDLEQPLPRIQADPAQLDRVLDNLLHNAIRHTPKGGRIRLHARRHAE 522

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I SV++NG  I       +F  FV      ++ G GLGL++ +  + LHGG + + S 
Sbjct: 523 RVIISVEDNGEGIAYGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVFSR 580

Query: 778 DEGVTTINCRIP 789
               T     +P
Sbjct: 581 PGQGTQFYMALP 592



 Score = 39.5 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 34/201 (16%)

Query: 241 RKLFKEEIKKRMISSSALEK-NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI 299
            + F + I+    ++  L K NF  T+   +        + ++   FG    A+   +  
Sbjct: 192 ARRFGQPIEALATAADQLGKGNFDVTLPVTQAAE-----LNQLTRRFGLMADALRKHQAT 246

Query: 300 TVNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            V++ L        +L ++   + I D+   L+  N                  ++  + 
Sbjct: 247 NVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQR---------QLGWNDSRVG 297

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSS---ETHKDTWHLPNGQ----TLHVIVTSNPR 409
             L  A + PE       ++ +  V +         D     + +    T  +   S+P+
Sbjct: 298 SSLAEALQRPE------LEQQLRQVLRGGSLDRPPDDLNMEVDEESRLLTYSLTPVSHPQ 351

Query: 410 G---GTIWMFENLTVQVDLET 427
           G   G + +  ++T Q   E 
Sbjct: 352 GPILGAVMVLHDVTEQRAFER 372


>gi|317151836|ref|YP_004119884.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942087|gb|ADU61138.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 533

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/525 (18%), Positives = 193/525 (36%), Gaps = 62/525 (11%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
             +  +L +   +  + D + Y+   N     L+ ++        +  +LL    + ++ 
Sbjct: 18  ETSRALLDSSMESSLVIDVSGYVLAANLMAANLYGMESVRELEQANIYDLLPRDSADSR- 76

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRGGTIWMFE---NLT 420
                    +E       S    +    + NG++L   +    NP G    +     +LT
Sbjct: 77  ---------RERFREAIDSVRALRFEEEV-NGKSLVHSIVPVTNPWGEVSRLAINTLDLT 126

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                +       + Q   ++ L   V    PD  I+ +N  FR  + +   +L      
Sbjct: 127 ELRRTDEDLRREQQRQIFFMESLPGIVYHLYPDRTIRYANRYFRKYFGSPRGKL--CADA 184

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSIIPL------ 533
            N A T        +  +    +   + D R ++       ++DS  E  I+ L      
Sbjct: 185 LNCANTSCIGCPPMESMETDRTVEWDWTDARGRTFHLQCSPMTDSSGERMIMVLGIDITD 244

Query: 534 ----PNAQTMLTFVNVTDSVRAERALTEKNEALRKAD--------------EIKNSFVQH 575
                +A  +    +     R  R L   NE L                    K++F+ +
Sbjct: 245 RKRAEDALKLAHDKSEDKVRRRTRELERANEELTSKSARLVAAMKKADAATRAKSAFLAN 304

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  ++G  +L          +++++ +E +  + T LL ++NDILD + ++A
Sbjct: 305 MSHEIRTPLNAVLGMAELALR---VQDEARKNECLERVLEAGTSLLTVINDILDFSKIEA 361

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKI 694
             + L      L D+L            +  + +     D    + + D  RL Q+   +
Sbjct: 362 RKLTLERIDFDLRDILRTALDMHRLHATDKGLGLTAEVGDDVPEAVLGDPGRLRQVLVNL 421

Query: 695 LSNAMDFSSKGS-TVILKAARDNG------------DFIFSVKNNGSSIPEDMCKSVFNR 741
           ++NA+ F+  G  TV +  A D                 F V + G  IP+   +++F  
Sbjct: 422 VANAVKFTDAGGVTVRIGLAPDQPADLSGLAPGQPLRLRFEVADTGIGIPKRKRRAIFKS 481

Query: 742 FVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           F+        +  G GLGL+I +  + L  G + + S +   +T 
Sbjct: 482 FLQADDSITRKHGGTGLGLAICKLLVELMHGSLDVESVEGEGSTF 526



 Score = 45.7 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 108/345 (31%), Gaps = 51/345 (14%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
              + L DS        D +G +L AN+        E +   +       L ++    R 
Sbjct: 18  ETSRALLDSSMESSLVIDVSGYVLAANLMAANLYGMESVRELEQANIYDLLPRDSADSRR 77

Query: 253 IS-SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE----AGIAIDVSK----EITVND 303
                A++           +G +  + IV V N +GE    A   +D+++    +  +  
Sbjct: 78  ERFREAIDSVRALRFEEEVNGKSLVHSIVPVTNPWGEVSRLAINTLDLTELRRTDEDLRR 137

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +       + +L   +     +R +++ NR F + +      L                 
Sbjct: 138 EQQRQIFFMESLPGIVYHLYPDRTIRYANRYFRKYFGSPRGKLCA--------------- 182

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTSNPRGG----TIWMF 416
              + LN            +S ET +     W    G+T H+  +           + + 
Sbjct: 183 ---DALNCANTSCIGCPPMESMETDRTVEWDWTDARGRTFHLQCSPMTDSSGERMIMVLG 239

Query: 417 ENLTVQVDLETKYNTL-------VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            ++T +   E             V+ +   ++  +E +       R+  +     +  + 
Sbjct: 240 IDITDRKRAEDALKLAHDKSEDKVRRRTRELERANEEL--TSKSARLVAAMKKADAATRA 297

Query: 470 EENRLSPGTH--------IRNIAATCSRYYNESDGWDLFAAIITS 506
           +   L+  +H        +  +A    R  +E+   +    ++ +
Sbjct: 298 KSAFLANMSHEIRTPLNAVLGMAELALRVQDEARKNECLERVLEA 342


>gi|229514161|ref|ZP_04403622.1| sensor protein TorS [Vibrio cholerae TMA 21]
 gi|229348141|gb|EEO13099.1| sensor protein TorS [Vibrio cholerae TMA 21]
          Length = 984

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKGITLTYHIDDDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRV 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFWFTLPL 691


>gi|258516237|ref|YP_003192459.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779942|gb|ACV63836.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 496

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + EK  A+ + D+ +  FV +VS+ELR+PLT I G+T+ L          ++ QY+  
Sbjct: 251 QEIQEKITAIERLDQTRRDFVANVSHELRTPLTIIQGYTEALLDG-FAETEEERQQYLNN 309

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   S  L  LVND+LDL ++++G M L    + L  LL +V         +  + + + 
Sbjct: 310 VLEESQRLQRLVNDVLDLRSLESGKMVLYKQKVDLTKLLAKVAGIFKPFYAQKQVFLSLS 369

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           ++    +  AD  RL Q+F  ++ NA+  +  G  V + +A +      +VK++G  I  
Sbjct: 370 AEEVWEAVYADPDRLEQVFVNLIDNALRHTPAGGEVKISSALETDKVFVTVKDSGPGISS 429

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                ++ RF        R   G GLGL+I ++ I+ HGG V ++S     T +   +P
Sbjct: 430 KDLPLIWERFYKVDKARSRGGEGSGLGLAITKAIIDAHGGWVEVTSEPGRGTVMTVCLP 488


>gi|229916169|ref|YP_002884815.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229467598|gb|ACQ69370.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 569

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 160/398 (40%), Gaps = 44/398 (11%)

Query: 400 LHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIK 457
           L +   +    G     F  ++ Q+          ++Q    +  +++GV        + 
Sbjct: 207 LRLETKTRDEIGELAASFNAMSSQLSKYVNALDRERLQLASILRSMADGVITLDRHANVI 266

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           ++NP    L +  +      +    +    S               I    DER      
Sbjct: 267 VTNPQASPLLQDGQPHEVVLSLYEEVMEGTSE------------KTIEVKQDERYYTLTV 314

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             L+ +   E +++ + +                            + D+++  FV ++S
Sbjct: 315 TPLVGEDDFEGAVVVIRDTSESH-----------------------RLDKMRTDFVANIS 351

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  + G+++ +      S +    ++   I   S  L  LVND+LDLA +++G 
Sbjct: 352 HELRTPLVTLQGYSEAIIDGITES-DEATKEFASIIYDESLRLARLVNDLLDLARIESGK 410

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             +++++  + D L  V +       E  IR++  +  +L    AD  RL Q+F+ ++ N
Sbjct: 411 ETMHFTSFDIGDFLPRVMRKFNQMASEKEIRLQTDAPHRL--IEADGDRLEQVFTNLIGN 468

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GV 754
           A+  +  G  + ++A  +       + + G  IP++    VF RF             G 
Sbjct: 469 AIAHTDSGE-IRIEATEETDGLRIQLTDTGHGIPKEDLPFVFERFYKADKARTSGSKTGT 527

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G+GL+IV++ ++ H G VS+SS+    TT    +P ++
Sbjct: 528 GIGLAIVKNVVDAHHGKVSVSSTLGVGTTFEIYLPFEQ 565


>gi|37676880|ref|NP_937276.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|50400926|sp|Q7MD16|LUXQ_VIBVY RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|37201424|dbj|BAC97246.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 857

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 160/398 (40%), Gaps = 30/398 (7%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F ++   ++    +  +  +   +  +     + V+   G +   NPA     
Sbjct: 331 NGSDILEFAHIGHTLENTFEQLESQRRSFQDLFNFALSPMMVWSESGLLIQMNPAAMKEL 390

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             E          ++ +    + +       L  A       +  +L G    + + +  
Sbjct: 391 GIE------HASPQDFSNPLFQLFKLKLSPHLKMAA------QGATLTGINVPIGEKIFR 438

Query: 528 YSIIPL----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ P+      +  ++   ++T  + AE+          ++ + +  F+  +S+E+R+P
Sbjct: 439 WNLSPIVVENGISGIIVQGQDITTLIDAEKQSNLARREAEQSAKTRADFLAKMSHEIRTP 498

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G   LLK S   + N KQ   V+ +  S   LL ++NDILD + ++ G   +   
Sbjct: 499 LNGILGIAQLLKRSVNDAENLKQ---VDVLCNSGEHLLAVLNDILDFSKIEQGKFNIKKR 555

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFS 702
                D LN ++        E  +  ++ +   L      D+ RL QI   ++SNA+ F+
Sbjct: 556 DFNFYDTLNTLENIYRPICREKGVSFEIHNQIPLDCQLHTDQVRLNQIMFNLISNAVKFT 615

Query: 703 SKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
             G  + +       A  ++      V + G  I E   +S+F  FV        +  G 
Sbjct: 616 PAG-RIEVSFKLEQFARSEHSILSIQVSDTGIGIDESKLESIFEPFVQADSLSTREYGGS 674

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+IV++ + +  G +S+ S     +T    IP ++
Sbjct: 675 GLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIPVEK 712


>gi|303326644|ref|ZP_07357086.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862632|gb|EFL85564.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 683

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 151/374 (40%), Gaps = 21/374 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            L  +         + +D   + V +   +   +   N +  + +   E  +    +   
Sbjct: 175 RLYERLRHKHDQLCDILDAFVDPVYIIDMESYELLFLNKSVEASFPKPEGPMGNICY--- 231

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                 R              I +  +E        EL   +      +   +    +  
Sbjct: 232 -----KRLQGRDSPCPFCTNAIIASRNEPYQWTYENELTKRTYTVVDKVIHWDTGHPVRL 286

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
              TD     R    + +A   A + K+ F+ H+S+E+R+P+  IIG T L   S     
Sbjct: 287 SISTDVTDLLRT-QHEKQAAVIASQAKSEFLAHMSHEIRTPMNGIIGLTHLALQS---DP 342

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +   Y+  I +S+T LL ++NDILDL+ ++A  M L      + ++L+ V  SI   +
Sbjct: 343 SPEHKDYLHKIRSSATSLLAIINDILDLSKIEANKMVLENVNYTMEEVLDFVYTSIRFPL 402

Query: 663 HENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            +  +  I  ++D        D  RL Q+   +LSNA+ F+SKGS V L+  R+N D   
Sbjct: 403 DQKGLEYICEVADDVPLKLWGDGLRLKQVLLNLLSNAVKFTSKGS-VRLRIRRENSDSQD 461

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              F V + G  I  +  + +F+ +        RR  G GLGLSI +    L  G++   
Sbjct: 462 LLHFMVTDTGMGISREYQQHLFDPYTQANASIARRFGGTGLGLSICKRIAGLMRGNLWCE 521

Query: 776 SSDEGVTTINCRIP 789
           S     +T +  IP
Sbjct: 522 SEPGNGSTFHLSIP 535


>gi|255527743|ref|ZP_05394597.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296187582|ref|ZP_06855976.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255508559|gb|EET84945.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296047539|gb|EFG86979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 591

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 165/381 (43%), Gaps = 26/381 (6%)

Query: 416 FENLTVQVD---LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           F N++  ++    +  Y  L       ++ ++ G+ V   +  I LSNPA   + +  + 
Sbjct: 225 FNNMSSTINNVVSQLNYRNLE--LNSILNSITYGILVIDINWNIILSNPAVIKILRL-DK 281

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSII 531
            L+ G +++N   +           +L+  I  +FD+   K  +  L    D + +    
Sbjct: 282 NLNIGDNLKNSIES----------QELYNLIEETFDNNVHKEKELGLRDNDDKIYKV--- 328

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                + +   V      +    + +    ++  +++++ FV +VS+EL++PLT IIGF 
Sbjct: 329 ---YTKLIDYDVENLVYEKGIVIILQDISEIKHLEKMRSEFVANVSHELKTPLTTIIGFV 385

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           D LK  K G    K+ +++  IS     L  L+ DIL L+ ++      N   + +   L
Sbjct: 386 DTLKR-KPGEDKEKRQRFLGIISEEVERLKRLIEDILLLSHLENQSSSNNLEEVNIYKEL 444

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++   +    +  NI I +I +     +V  +    Q    ++ NA+ ++     + + 
Sbjct: 445 DDILYMLTPSANRKNIGINLIIEKNFTLYVKSKDWFKQAVMNLIDNAIKYTQPEGHINVS 504

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
           A     + +  VK+NG  IP++    VF RF        R   G GLGL+IV+  ++   
Sbjct: 505 AYIKENNALIIVKDNGVGIPKEDISRVFERFYRVDKSRSRSEGGTGLGLAIVKHIVSELD 564

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +    ++P 
Sbjct: 565 GSIYLNSELNKGSEFIIQLPL 585


>gi|22086084|gb|AAM90591.1|AF398464_1 protein kinase PpoS [Marinomonas mediterranea MMB-1]
          Length = 939

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 133/271 (49%), Gaps = 16/271 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  T     N+         L   N+   +++ +K+ F+ ++S+E+R+PL  I+G+  +L
Sbjct: 258 DQATEDIRRNMDSLEEKSAQLHIANKEATESNRLKSQFLANISHEIRTPLNAIMGYIQIL 317

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +  +   L+ +Q  Y++ I+ S+T LL +++DILD + ++AG + L+ + I + D+++EV
Sbjct: 318 QKDQ---LDKQQRLYMDTIAQSTTNLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEV 374

Query: 655 KQSIATK---MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VI 709
            Q +++         + +    D  +    + D  R+ Q+ + ++ NA+ F+ +GS    
Sbjct: 375 YQILSSANLVNASKELDLIPEFDLDVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTT 434

Query: 710 LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           +K    +       F + + G  IPE+   ++F  F        R   G GLGL I +  
Sbjct: 435 VKILEKSNSSLKLSFQIIDTGVGIPENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKL 494

Query: 765 INLHGGHVSISSSDEGVTTINCRI---PSKE 792
           +   GG+V +SS     +     I   PS++
Sbjct: 495 VKQMGGNVEVSSEHGIGSNFRFTIVLKPSQK 525


>gi|166364910|ref|YP_001657183.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166087283|dbj|BAG01991.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 669

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 127/248 (51%), Gaps = 10/248 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              AE+ L E  EA  KA++ K+ F+ ++S+ELR+PL  I+GFT L+  S+  S++S+  
Sbjct: 186 RYEAEKELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLI--SRDSSISSEYR 243

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QY+E ++ S   LL L+NDIL+++ ++AG    N S   L  LL+ + + + ++     +
Sbjct: 244 QYLEIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKAL 303

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIF 721
            +       L  ++  D  +L Q+   +L N + F+  G  V L+        D+   ++
Sbjct: 304 SLIFDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGG-VTLRVKLGEKREDDQRLLW 362

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +++ G  I  +    +F  F      R  ++G GLGL I + F+ L GG + +SS    
Sbjct: 363 EIEDTGLGIAPEEIYKLFQPFNQTETGRKSQQGTGLGLPISKKFVELMGGAIGVSSILGQ 422

Query: 781 VTTINCRI 788
            +  +  I
Sbjct: 423 GSIFSFDI 430


>gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 916

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 191 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 250

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 251 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 308

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 309 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 364

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 365 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 424

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 425 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 484

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 485 GEISLTSRLHQGSTFWFTL 503


>gi|28869332|ref|NP_791951.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852573|gb|AAO55646.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 746

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 146/368 (39%), Gaps = 6/368 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G +   N     +    E  +        
Sbjct: 230 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVF 289

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 290 YLPQECPQHPDMALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKIT 349

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 350 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 408

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++   
Sbjct: 409 ---QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 465

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI +K +         +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 466 ADGNIELKELPHLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 525

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++    
Sbjct: 526 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 585

Query: 782 TTINCRIP 789
                 +P
Sbjct: 586 CRFTLALP 593


>gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
 gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
          Length = 872

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 155/373 (41%), Gaps = 15/373 (4%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              +     T+D L + V+V   + R KL         +  +N L         A     
Sbjct: 237 REQILYNRYTLDQLGQAVSVV--ELRNKLVERQLLLFSRHLQNELGAEIKYSQRAMWAIA 294

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTM-----LTF 542
                    +FA   ++       L   L+++S+         IP+              
Sbjct: 295 GVGIIAMVIMFAWGTSTLYRINSKLSRILQVMSNLRGSSHVEQIPIDGRDEFAKFATELN 354

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +      E+ L +  E    A++ K+ F+ ++S+E+R+PL  IIG T++L  S    L
Sbjct: 355 YTIAKQKAYEQDLVKAKEHAEAANQAKSIFLANMSHEIRTPLNGIIGMTEILADSH---L 411

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++ Q   +  + ASS  LL L+NDILDL+ +++G + L+     + +++ +    + +  
Sbjct: 412 SAAQKDILNDVDASSHALLVLINDILDLSKIESGNLALSPHMASVREIIFDTVNMVNSHA 471

Query: 663 HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +  + + V  +D        D  R+ Q+   ++SNA+ FS +G+ ++  +  ++     
Sbjct: 472 LKQEVTLHVEFADHVPNHLELDEFRVKQVLMNLMSNAIKFSPQGNVIMRVSVVEHHGLSI 531

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ED    +F  F        RR  G GLGL+I    ++L  G +S+ S   
Sbjct: 532 EVADTGVGIAEDKLAEIFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVESGLG 591

Query: 780 GVTTINCRIPSKE 792
             +     +P  E
Sbjct: 592 EGSRFTFTLPMVE 604


>gi|325109469|ref|YP_004270537.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324969737|gb|ADY60515.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 543

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 140/306 (45%), Gaps = 19/306 (6%)

Query: 498 DLFAAIITSFDDERKSLQ----GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           D    ++T+ +DE  +++    G  + L    L   I+      ++       +  RA +
Sbjct: 81  DTPIVVLTANNDEPTAIEALRRGAQDYLIKGELSSEILQRVIRYSVERHAMAREMERANQ 140

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E +     A+++K+ F+ +VS+ELR+PLT I+GFTDL+   +   L  +  +    I
Sbjct: 141 ELQELSRQAEAANQLKSEFLANVSHELRTPLTAILGFTDLVLDHE---LEPEVERASLTI 197

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL+++NDILDL+ ++AG +++  S      ++ EV   +  +     I ++  S
Sbjct: 198 KQNGQHLLSILNDILDLSKIEAGHLRIERSDCSPGQIIEEVISLLRVRATAKGIDLRFHS 257

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKNN 726
              + +   +D  R+ QI   ++ NA+ F+ +G      STV L+           V + 
Sbjct: 258 KPDVPARIQSDPLRIRQIMLNLIGNAIKFTERGFVQVNMSTVELEGKP---QLRIDVSDT 314

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +  +    +F  FV       R   G GLGL+I    + L  GH+S SS  E  +T 
Sbjct: 315 GIGMTPEQLDRLFQPFVQADASITRQFGGTGLGLTICRRLLELMDGHISASSRPELGSTF 374

Query: 785 NCRIPS 790
               P 
Sbjct: 375 QVVFPL 380


>gi|308535171|ref|YP_002137349.2| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|308052516|gb|ACH37553.2| LOW QUALITY PROTEIN: sensor histidine kinase [Geobacter
           bemidjiensis Bem]
          Length = 554

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 117/259 (45%), Gaps = 19/259 (7%)

Query: 547 DSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  + E+AL +  E L         A+  K  F+ ++S+E+R+PL   +G   L+    +
Sbjct: 278 ERKQYEKALLQTGERLAVAQRQSEAANRAKTEFLANMSHEMRTPLAGALGMIRLVLDMNI 337

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G   +++ Q +E    S+  LL ++ D+LD + ++AG+M        L +++    + ++
Sbjct: 338 G---AEERQLLEMAKRSADSLLRIIADLLDFSRLEAGVMTFEDKPFSLKEVVRSAVEVVS 394

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA----- 712
               E  + +    DG +      D  RL Q+   +L NA+ F+ +G   V +K      
Sbjct: 395 LVAEEKELHLSWSVDGAVPDQLSGDEGRLRQVLVNLLGNAVKFTERGGIEVSIKTLEPLE 454

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
           A+      F V++ G  IP D  + +F+RF         +  G GLGL++    +   GG
Sbjct: 455 AQGERYVEFYVRDTGVGIPADQLQRIFDRFTQVDSSLTRRHGGTGLGLALTRQIVEKMGG 514

Query: 771 HVSISSSDEGVTTINCRIP 789
            +   S     +T +  +P
Sbjct: 515 SIWAESVIGSGSTFHFTVP 533


>gi|295688134|ref|YP_003591827.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430037|gb|ADG09209.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 633

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/281 (24%), Positives = 133/281 (47%), Gaps = 9/281 (3%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E  +D  +  S+I   N        N  D   A   L +  +    A+ +K+ F+ ++S
Sbjct: 199 VEQAADDDVFQSLIDSFNHLVARLRSNDQDLRGAMAELVKARDDANTANVLKSHFLANMS 258

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  ++   +++    +  L   Q + +  I  S  +LL ++ND+LDL+ ++AG 
Sbjct: 259 HEIRTPLNGVLAMAEVM---DMDDLKPAQRERLAVIRESGGLLLAVLNDVLDLSKIEAGR 315

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILS 696
           +++      +  L   +++S A +  E  +  +V ++    G +  D  RL QI   ++S
Sbjct: 316 LEIQDRPFDIAQLAQSIRESYAPQAREKGLAFEVAVAPEAHGLWRGDVDRLRQILGNLIS 375

Query: 697 NAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
           NA+ F+ +G+  V   +A D       V + G  I  ++   +F++FV       RR  G
Sbjct: 376 NALKFTLEGAVAVRFASAEDGSGLRIDVADTGIGIAPEILPRLFDKFVQADSSTTRRFGG 435

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRIPSKE 792
            GLGL+I      L GG + + S +   +T      +P +E
Sbjct: 436 SGLGLAICRELAALMGGSIKVQSREGRGSTFTVLVALPREE 476


>gi|118443713|ref|YP_877290.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134169|gb|ABK61213.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 553

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/521 (18%), Positives = 211/521 (40%), Gaps = 36/521 (6%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSND 353
           V++   +++       ++  L  AI + ++N    F N   ++L   ID   +       
Sbjct: 9   VNERQFLDEDGLFYKNLMKILPDAIFL-EKNEKFIFANDEAIKLLGGIDKKDILGK---- 63

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN------ 407
            ++EFL    +  E+  +    E+     +     K      NG+ + V V S       
Sbjct: 64  SVMEFLDEKFQKTEEELYGETVESDKEATREKRIVK-----LNGEVIDVEVKSMYFSPEE 118

Query: 408 --PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                  I +  ++T +   E        +  +  + L   V ++   G+I+ +N     
Sbjct: 119 SYEDKIKIVIVRDITKRKKYEKALKESECLHRKLTELLPMAVCIYD-YGKIEFANKKCAD 177

Query: 466 LWKTEENRLSPGTHIRNIA---ATCSRYYNESDGWDLFAAIITSFDDERKSLQGT---LE 519
           +   ++          +        S         D    I+  F +    + G    +E
Sbjct: 178 ILGVKDKDELINKSAFDFIYEKNIESSKVQLKKIEDHADKILPPFHNRAICVNGNVIDIE 237

Query: 520 LLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             S ++ + + + +    + +  ++ +    +         E  R+ + I+  F  ++S+
Sbjct: 238 TWSTTLCDETGVKILTVFRDITEYLQLQKIKQKAEENRILLEKEREFNRIRTEFFANLSH 297

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNS------KQSQYVEYISASSTILLNLVNDILDLAT 632
           EL++PL  I+G +  L +  L +L+       K  Q ++ +  +S  LL L+N+I+D+  
Sbjct: 298 ELKTPLNIILG-SQQLLSLYLQNLDECNVNSQKIKQNLKILKQNSNRLLRLINNIIDITI 356

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +++G+  +N     +  ++ ++  S+       +I++   +D +    + D +++ +I  
Sbjct: 357 INSGLFAMNLKNRNIVSIIEDITLSVVDYAKNKDIKVIFDTDTEEKITLCDEEKIERIIL 416

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
            +LSNA+ F+ KG  + +    D      +V++NG  IPED    +F+RF          
Sbjct: 417 NLLSNAVKFTPKGGKIKVNIHDDGDKLRITVRDNGIGIPEDKIHMIFDRFTQVDKSFTRS 476

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G G+GL +V++ + +H G VS+ S     +     +P K
Sbjct: 477 TEGSGIGLYLVKALVEMHNGKVSVESVYGKGSEFIIDLPVK 517


>gi|53712343|ref|YP_098335.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215208|dbj|BAD47801.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 633

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 129/249 (51%), Gaps = 5/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +    RA + + E      +A+++K++F+ ++S+E+R+PL  I+GF++LL    +   
Sbjct: 385 YYIHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLS---MVED 441

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  +Y   I  ++ +LL L+NDILD++ +++G+   + + +  N L++EV+Q    ++
Sbjct: 442 KEEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRI 501

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + + +          F  D+ RL+Q+ + ++ NA+ F+S+G   I    +D     F 
Sbjct: 502 RTDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFY 561

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  +  + C+ VF RFV   +    +G GLGLSI +  I   GG + + S     +
Sbjct: 562 VSDTGCGMSAEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGS 619

Query: 783 TINCRIPSK 791
                +P +
Sbjct: 620 VFWFTLPYR 628


>gi|326794409|ref|YP_004312229.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326545173|gb|ADZ90393.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 939

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 133/271 (49%), Gaps = 16/271 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  T     N+         L   N+   +++ +K+ F+ ++S+E+R+PL  I+G+  +L
Sbjct: 258 DQATEDIRRNMDSLEEKSAQLHIANKEATESNRLKSQFLANISHEIRTPLNAIMGYIQIL 317

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +  +   L+ +Q  Y++ I+ S+T LL +++DILD + ++AG + L+ + I + D+++EV
Sbjct: 318 QKDQ---LDKQQRLYMDTIAQSTTNLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEV 374

Query: 655 KQSIATK---MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VI 709
            Q +++         + +    D  +    + D  R+ Q+ + ++ NA+ F+ +GS    
Sbjct: 375 YQILSSANLVNASKELDLIPEFDLDVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTT 434

Query: 710 LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           +K    +       F + + G  IPE+   ++F  F        R   G GLGL I +  
Sbjct: 435 VKILEKSNSSLKLSFQIIDTGVGIPENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKL 494

Query: 765 INLHGGHVSISSSDEGVTTINCRI---PSKE 792
           +   GG+V +SS     +     I   PS++
Sbjct: 495 VKQMGGNVEVSSEHGIGSNFRFTIVLKPSQK 525


>gi|225569632|ref|ZP_03778657.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
 gi|225161102|gb|EEG73721.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
          Length = 870

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 10/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+   L  + E    A+  K+ F+  +S+E+R+PL  I+G  +L K         +    
Sbjct: 333 RSSELLRTEKERAETANRAKSDFLSQMSHEIRTPLNGIMGMVELGKHHI--EEPDRMRNC 390

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ SS  LL+L+NDILD++ +++G ++L+     L  LL  +      +     I  
Sbjct: 391 LDKITLSSAHLLSLINDILDMSKIESGKIELHPERFDLGRLLRTLTTVFLVQAKNKQIDF 450

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNG--DFIFSV 723
           ++   G+L  ++  D  RL QI + +LSNA+ F+     V L   +  RD       F V
Sbjct: 451 QIFLYGELEEYLTGDALRLNQILTNLLSNALKFTPAHGYVSLNVEELQRDENGIWLRFEV 510

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I  +  + VF  F         +  G GLGL I ++F+ + GG V++SS     
Sbjct: 511 RDTGRGIAPENLERVFEAFTQENSGIVREYGGTGLGLPITKNFVQMMGGSVTVSSEIGAG 570

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 571 SVFTVDLP 578


>gi|285018412|ref|YP_003376123.1| two-component system sensor protein [Xanthomonas albilineans GPE
            PC73]
 gi|283473630|emb|CBA16133.1| putative two-component system sensor protein [Xanthomonas
            albilineans]
          Length = 1310

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 115/721 (15%), Positives = 250/721 (34%), Gaps = 119/721 (16%)

Query: 160  SGSCAFLRILSLDGIYS-ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
              + A + ++ L      E  E      +L++  +  + L D++  +V+     G + + 
Sbjct: 449  VWTPAEIELVRLVAARCWESMERASAQAELASSEARLRELADAMPQIVFTTMPDGQVDYF 508

Query: 219  NISYKK----NTETEGIVFQKAIG--ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
            N  + +         G    + +   E      +   + + S    E  +         G
Sbjct: 509  NKRWYEYTGLPVGETGYDSWRKVHTEEGLARMMQVWPEALRSGEPYEIEYPLRRH---DG 565

Query: 273  NNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIF 322
            N + +  + + + +  G+     G   D+     V  +L         +  N  V I + 
Sbjct: 566  NYRWHLGRALAIRDEAGQIVRWIGTNTDIHDRRMVEQRLQESELRFRNLCDNAPVMIWMS 625

Query: 323  DQNRYLQFHNRS-FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
            + +   ++ +R  ++   + +   L         ++ + +  ++              S 
Sbjct: 626  NADGDYEYISRQWYLYTGQSEQEALGAGWLEKIHVDDVAATGRM----------LARASN 675

Query: 382  YKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLE---TKYNT 431
             + + T +      +G+    + T+ PR        G I    ++  +  +E       +
Sbjct: 676  DRRAYTIEYRLRRHDGEYRWCVDTATPRFSSSGQFLGFIGSLMDIAERKRIEHATAAERS 735

Query: 432  LVKV------QGETIDHLSEGV------------AVFGPD-------------------- 453
             +++          ++ ++ G+             +                        
Sbjct: 736  ALEMITTGKPLNVVLEAIAHGIEAQSDVGLRCTIMLVDEHQQCLLEGAAPSMPAGFRKAI 795

Query: 454  ------------GRIKLSNPAFR----SLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
                        GR              L    ++ L+      +I A CS     SDG 
Sbjct: 796  HRLPIDANTVSCGRAVHLRRQVLCSDIRLDAHWQHYLTVAVE-ADIVACCSTPIIASDGD 854

Query: 498  -----DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                  L+   +   +   + L  +   L+  ++E     L   Q +    N      AE
Sbjct: 855  VLGSVALYFPFVHYPNAHEQELARSASRLAGIIIERRKTDLRLQQLLDAEQN--ARSEAE 912

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            RA             +K+ F+  +S+ELR+PL  I+G+  L++      L    S+ ++ 
Sbjct: 913  RA-----------SRMKDEFLATLSHELRTPLNAILGWARLMQQE-TEVLEKDISKGLQV 960

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I  S+     +++D+LD++ + +G ++L  + + L  L+ E   S      +  + I ++
Sbjct: 961  IERSAHTQAQIIDDLLDMSAILSGKVRLEPTELDLRTLIGETIDSARPSAEDKGVDIVLV 1020

Query: 673  SDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            +D   L  ++ D  RL Q+ + ++ NA+ F+     + +  +  +      V + G  I 
Sbjct: 1021 ADSTPLPPYLGDTVRLQQVLTNLIGNAIKFTPSTGKITVTLSNSSTHMRIEVSDTGLGIE 1080

Query: 732  EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788
                  VF+RF        R   G+GLGLSI +    LH G +S+ S   G  +T    +
Sbjct: 1081 PLFLPHVFDRFSQADASSTRSAGGLGLGLSIAKQLTELHHGQLSVISDGLGLGSTFTLLL 1140

Query: 789  P 789
            P
Sbjct: 1141 P 1141



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 40  PIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQL 99
             I L+R   +   +  E  S  +E+    ++   L      +        +      + 
Sbjct: 453 AEIELVRLVAARCWESMERASAQAELASSEARLRELADAMPQIVFTTMPDGQVDYFNKRW 512

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN---------D 150
           ++   +P  +T   S+          ++ +   +  + G+ +++    +           
Sbjct: 513 YEYTGLPVGETGYDSWRKVHTEEGLARMMQVWPEALRSGEPYEIEYPLRRHDGNYRWHLG 572

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
            A+ I  R         I    G  +++ +  +  ++L      F+ L D+   ++W  +
Sbjct: 573 RALAI--RDEAGQIVRWI----GTNTDIHDRRMVEQRLQESELRFRNLCDNAPVMIWMSN 626

Query: 211 QAGDILWANISY-----KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
             GD  + +  +     +   E  G  + + I           +    +S+       E 
Sbjct: 627 ADGDYEYISRQWYLYTGQSEQEALGAGWLEKIH--VDDVAATGRMLARASNDRRAYTIEY 684

Query: 266 VSTLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
                 G  +    V              G  G  +D+++   +          L  +T 
Sbjct: 685 RLRRHDGEYRW--CVDTATPRFSSSGQFLGFIGSLMDIAERKRIEHATAAERSALEMITT 742

Query: 318 A 318
            
Sbjct: 743 G 743


>gi|171060877|ref|YP_001793226.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778322|gb|ACB36461.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1110

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 152/399 (38%), Gaps = 32/399 (8%)

Query: 418 NLTVQVDLETK--YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           + T +     +       +            +A+   D R+   N  F  L+      + 
Sbjct: 308 DETARRSQAAQDSLRDSERRFRRLFQEAPLPLALVSRDARVTDINRRFVQLFGYTLAEIP 367

Query: 476 PGTHIRNIAATCSRYYNES-DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              H   +A   + Y       W+     +     +    +  +     SV    I  + 
Sbjct: 368 TLAHWWQLAYPDATYRAAVIARWNAARVAVAQTRGDIAPQEYHVTCRDGSVRTLLIAGID 427

Query: 535 -NAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSFVQH 575
            +   M TF ++T+  RAE+ +   N  L +                   +  K++F+ +
Sbjct: 428 QDDGFMATFFDITEIRRAEQHVRALNADLERRVADRTGELLQAREAAEAANRAKSAFLAN 487

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  I+G   LL+      +    +Q +  +  ++  LL ++NDILDL+ ++A
Sbjct: 488 MSHEIRTPMNAIVGLAHLLRRDAHEPV---AAQRLGQMIDAAGHLLQVINDILDLSKIEA 544

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++L      L  LL      +A +     + + +  DG   +   D  RL Q    +L
Sbjct: 545 GKLQLEQLPFSLQALLARNCALVADRARAKGLAVAIEVDGVPDALSGDPTRLSQALLNLL 604

Query: 696 SNAMDFSSKGSTV-----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            NA+ F+ +GS V     + +   D+    F V++ G  I  D    +F  F+       
Sbjct: 605 GNAVKFTEQGSIVLRAECVARGTDDHLTVRFRVRDTGIGIAPDKLDQLFAPFMQADASTT 664

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           RR  G GLGL+I +      GG V + S     +     
Sbjct: 665 RRFGGTGLGLAITQRLAATMGGEVGVRSEPGRGSEFWFT 703



 Score = 45.3 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 72/227 (31%), Gaps = 5/227 (2%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + + ++ D       +     + +A+  ++  +   NR FV+L+   LA + T  ++   
Sbjct: 316 AAQDSLRDSERRFRRLFQEAPLPLALVSRDARVTDINRRFVQLFGYTLAEIPTL-AHWWQ 374

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIW 414
           L +  +  +      W   +  +          +      +G    +++       G + 
Sbjct: 375 LAYPDATYRAAVIARWNAARVAVAQTRGDIAPQEYHVTCRDGSVRTLLIAGIDQDDGFMA 434

Query: 415 MFENLTVQVDLETKYNTLV-KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            F ++T     E     L   ++    D   E +           +  AF  L       
Sbjct: 435 TFFDITEIRRAEQHVRALNADLERRVADRTGELLQAREAAEAANRAKSAF--LANMSHEI 492

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            +P   I  +A    R  +E         +I +     + +   L+L
Sbjct: 493 RTPMNAIVGLAHLLRRDAHEPVAAQRLGQMIDAAGHLLQVINDILDL 539


>gi|160943810|ref|ZP_02091041.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444984|gb|EDP21987.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
          Length = 648

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 11/253 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                   R L         A+  K  F+ ++S+++R+P+  IIGFT L  T        
Sbjct: 115 HAQLEEQNRKLELAVRHEAAANRAKREFLFNMSHDIRTPMNAIIGFTSLAATHV--DNKE 172

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +   Y++ IS SS  LL+L+ND+LD++ +++G +K+    + L DL+++++  I   +  
Sbjct: 173 QVLDYLKKISTSSQHLLSLINDVLDMSRIESGKVKIEEKAVHLPDLVHDIRSIIQPNISS 232

Query: 665 NNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
             + + + + D      + D  RL Q+   ILSNA+ F+  G  V ++ A+  G      
Sbjct: 233 KRLSLFIDTMDVVDEDIITDPLRLNQVLLNILSNAIKFTPTGGMVSIRIAQKPGAPKGCG 292

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSIS 775
           ++ F +K+NG  I ++  K +F  F           +G GLGLSI ++ ++L GG +++ 
Sbjct: 293 NYEFRIKDNGIGINKEFQKHIFEEFTREESSTVSGIQGTGLGLSITKNIVDLMGGTITLE 352

Query: 776 SSDEGVTTINCRI 788
           S     +     +
Sbjct: 353 SEPGKGSEFIVNL 365


>gi|157961008|ref|YP_001501042.1| hybrid sensory histidine kinase BarA [Shewanella pealeana ATCC
           700345]
 gi|157846008|gb|ABV86507.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 929

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 137/321 (42%), Gaps = 14/321 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++    ++         L   +I   D  ++ +      LS+   E          
Sbjct: 212 QPITDMVRVVAKIREGKLDTRLTGNLIGELDLLKRGINAMAGSLSEYHDEMQQNIDQATS 271

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  IK+ F+ ++S+ELR+PL  +IGF   LLKT
Sbjct: 272 DLRETLEQIEIQNVE--LDMAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT 329

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+S Q  Y+  I  S+T LL+++NDILD + ++AG M L      L + + E   
Sbjct: 330 ----PLHSSQQDYIRTIERSATNLLSIINDILDFSKLEAGKMVLENIPFSLRETIEETVT 385

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
            +++   E  + + +  D ++      D  R  QI + ++ NA+ F+ KGS    + L+ 
Sbjct: 386 MLSSSAREKELALVIDVDARIPEDVSGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEE 445

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
            +D        + + G  + E    S+F  F        RR  G GLGL I +  +N  G
Sbjct: 446 VKDGKVHIRCEIIDTGIGVDEQQQSSLFQAFGQADSSISRRFGGTGLGLVITKRLVNRMG 505

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +   S     +T    +P 
Sbjct: 506 GQIGCYSEPNQGSTFWFSLPL 526


>gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
 gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
          Length = 916

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 191 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 250

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 251 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 308

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 309 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 364

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 365 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 424

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 425 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 484

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 485 GEISLTSRLHQGSTFWFTL 503


>gi|304412088|ref|ZP_07393698.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307305983|ref|ZP_07585729.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304349638|gb|EFM14046.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306911476|gb|EFN41902.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1629

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 126/709 (17%), Positives = 269/709 (37%), Gaps = 74/709 (10%)

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILS---------LDGIYSELAETTLKCKKLSNHI 192
             L   T         G+++G    +R ++         L    S   + T +   L   +
Sbjct: 431  HLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVTKRTHALQQAL 490

Query: 193  SVFKVLFDSLDFLVW--HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK- 249
               + L D+++  +     D  G IL  N ++       G   ++ +G++  + +     
Sbjct: 491  LENQTLLDTINQQLLYSVTDPNGVILEVNDNF---CRISGYSREQLVGKTHAILQSGEHD 547

Query: 250  ----KRMISSSALEKNFCETVSTLE-HGNNKSYKIV--RVLNSFGE----AGIAIDVSKE 298
                + M       +++   +  L+ H   K +  V   V + +G+      + ID++  
Sbjct: 548  VSFWRSMWQQINSGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFVALRIDITDR 607

Query: 299  ITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELWEIDLAFL--ATNPS 351
                 +  +   +L N+  A     I   D    +   NR    L       +   + P+
Sbjct: 608  KLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPA 667

Query: 352  NDELLE--FLRSANKLPE-QLNWKTWKENIF-SVYKSSETHKDTWHLPNGQTLHVIVTSN 407
               LLE   +RSA    E   + + +   ++ +  + SET   T+   +G    V ++  
Sbjct: 668  PLHLLEEVMIRSAELSAEYGKDIQGFDVFVYKAKAEGSETRNWTYVRKDGSQFQVSLSVT 727

Query: 408  PRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                      G + +  ++++ +  +    T      +  +    G+  +   G     N
Sbjct: 728  AMRDSVGEIIGYLGIGVDISLMLLQQQALMTASNHLSKAAEVAQLGIWTWNLLGNSLEWN 787

Query: 461  PAFRSLWKTEE---------NRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDD 509
                +++   E            S   H  +IA   ++     +G   +  I  +   D 
Sbjct: 788  ERMFAIYDQPESLREQGLTYEHWSMRVHPDDIAFADAKLKGAVEGTAQYDPIFRVVRTDG 847

Query: 510  ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
              + +Q   ++  D             + +   +++T+  + E +L E  +    A   K
Sbjct: 848  SIRYVQAAAQVERDKQGHAI-------RVIGINLDITEQQQLEESLREAKQEADAASAAK 900

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            ++F+ ++S+E+R+P+  ++G   L++ +   SL+ +Q  YV     ++  LL L+NDILD
Sbjct: 901  SAFLANMSHEIRTPMNAVLGMLQLIQYT---SLSRQQQDYVNKTQTAAKSLLGLLNDILD 957

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLL 688
             + +DAG + L+     +  L+ ++   ++    + ++ +    D       +AD+ RL 
Sbjct: 958  FSKIDAGKLVLDLHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPPWLLADQLRLQ 1017

Query: 689  QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            QI   +  NA+ F+  G  ++    L+   D      S+ + G  I ++  + +F  F  
Sbjct: 1018 QILVNLAGNALKFTHHGQVIVGIECLRHEADTVTVQISITDTGIGISDEQIERIFTGFEQ 1077

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIP 789
                  RR  G GLGL+I +  I L G  + ++S     +        P
Sbjct: 1078 AESSTSRRFGGTGLGLAISKRLIGLMGSELQVTSKVGVGSRFWFDMTFP 1126


>gi|242280945|ref|YP_002993074.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123839|gb|ACS81535.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 758

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 114/557 (20%), Positives = 210/557 (37%), Gaps = 81/557 (14%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +  +      +L    + I +   +R  Q  N    E+       L    S       
Sbjct: 67  EILEARDVQLQTVLSAAPIGIGVV-VDRIFQEVNDFLCEMTGYSREELIGKSS------- 118

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNPRG------ 410
                  P   ++    +  ++  +     + +  +   +G+ +HVI++S P        
Sbjct: 119 ---RVVYPSDADFDLVSKYKYAQIREKGIGSVETRFQRKDGKIIHVILSSKPLDCNDWSK 175

Query: 411 GTIWMFENLTVQVDLE----TK--YNTLVKVQGETIDHLSEG------------VAVFGP 452
           G  +   N+T + + E     +  +  LV        +LS G            + +F  
Sbjct: 176 GVSFTVLNITKRKEAENLLSRRIVFENLVSNVASDFLNLSVGDIDRGLTEALKKICLFTG 235

Query: 453 DGR----IKLSNPAFRSLWKTE-----ENRLSPGTHIRNIAA-------TCSRY-YNESD 495
            GR    +   N +             E ++    +I  + +        C R  Y   D
Sbjct: 236 VGRAYIFLMRGNSSICDNTHEWCAENIEPQIQELQNIDLVESGSLLWETLCKRESYYIPD 295

Query: 496 ----GWDLFAAIITSFDDERKSLQGTLELLS--------DSVLEYSIIPLPNAQTMLTFV 543
                 DL    I    D    L   +            DSVLE+      +   +  F 
Sbjct: 296 VSALPDDLPDKAILQVQDIWSVLIEPIYFYDQLVGFVGFDSVLEHRKWSEEDIDILSLFS 355

Query: 544 NVT----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                  +  ++E  L         A+  K+ F+ ++S+E+R+PL  I+G   L++   +
Sbjct: 356 KNVALVLERKKSEERLIAAKLEAESANIAKSEFLANMSHEIRTPLNGIMGMLQLMR---M 412

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G +N KQ +   +   S   L  L+ DILD+  +++G +++  +   L++ LN V+    
Sbjct: 413 GEMNQKQEEQCGFAMESCKRLNKLLGDILDITRIESGHLQIVDAEFDLHNALNSVQALFK 472

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG- 717
               + NI ++V   G +  + + D  RL QIF+ ++ NA+ F+  G  ++     D   
Sbjct: 473 PAAIQKNIDLRVEIAGNVPKTMIGDINRLHQIFNNLIGNALKFTDSGFVLVEAYLLDRNQ 532

Query: 718 ----DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
                 +FSV ++G  I +    S+FN F     +      G GLGL+IV+  + L GG 
Sbjct: 533 NGSYHILFSVSDSGIGIEDSKLDSIFNSFTQIETSRTRNYEGAGLGLAIVKQLLELMGGT 592

Query: 772 VSISSSDEGVTTINCRI 788
           +SISS     T+I   +
Sbjct: 593 LSISSEINVGTSICFSL 609


>gi|152993425|ref|YP_001359146.1| hypothetical protein SUN_1842 [Sulfurovum sp. NBC37-1]
 gi|151425286|dbj|BAF72789.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1046

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 15/279 (5%)

Query: 519 ELLSDSVLEYSIIPLPNAQ-TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +L  D++ +   +     Q  +   ++  D     R L    +   +A+E K+ F+ ++S
Sbjct: 332 QLFDDTLRDIEAVLNKEQQKELQKLIDRHDINNIYRFLVNTIQ---EANEAKDLFLANMS 388

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+GFT LLK++   +    Q +++  I  SS  LL +VNDILDL+ + A  
Sbjct: 389 HEIRTPLNGIVGFTQLLKST---NPTPDQEEFITVIENSSDNLLAIVNDILDLSKIKADK 445

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696
           ++L        +      +S   +  E +I + V  D  L +  + D  ++ QI   ++S
Sbjct: 446 IELESIPFNAIEKFESAIESYGARAAEKDIELGVFIDPGLPTPLIGDPTKISQIIVNLIS 505

Query: 697 NAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRG 749
           NA+ F+S   ++ ++        +N    FSV++ G  I E+    +F+ F         
Sbjct: 506 NAIKFTSTHGSIDVRIEKMNETEENVTMKFSVRDTGIGITEEQKDKIFDPFSQADVSTSR 565

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  G GLGL+I        GG + I S +   +     +
Sbjct: 566 KYGGTGLGLAISVKLTAFMGGELDIESEEGEGSVFFFSL 604


>gi|86145818|ref|ZP_01064147.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222]
 gi|85836517|gb|EAQ54646.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222]
          Length = 1656

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 161/381 (42%), Gaps = 19/381 (4%)

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            +++  D         +     ++      +V   + +++ +N   + L+  E   L    
Sbjct: 912  ISIANDATEALKKAQEQLYNMLNSSPIAASVVFEE-KVRYANDTAKRLFGVEGLDLDS-I 969

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-Q 537
             + +I  + S   +      L   ++      RK   GT  +   +++ Y +  L     
Sbjct: 970  DVDSIHDSLSVRDDVHKELMLNGKVVNRELVLRKP-DGTRFV---ALVSYYLFELDGEIA 1025

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            T+    ++++  R    L E+ +    A + K+ F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1026 TLFWAFDISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL---A 1082

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 N     Y+E +  S   LL+++NDILD + ++AG + ++           +V + 
Sbjct: 1083 IGEISNPVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIEL 1142

Query: 658  IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  K +E  + + +  D +L +  + D  RL Q+   ++ NA+ F+  GS  +  A  ++
Sbjct: 1143 MEPKANEKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTETGSVSLTVALVES 1202

Query: 717  GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             D        V + G  I ++    +F  F        RR  G GLGL+I +  +   GG
Sbjct: 1203 DDNSLTMKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGG 1262

Query: 771  HVSISSSDEGVTTINC--RIP 789
             +S+ S     +  +    +P
Sbjct: 1263 QISVGSVFGQGSEFSFVLTLP 1283


>gi|189347233|ref|YP_001943762.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
 gi|189341380|gb|ACD90783.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
          Length = 608

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 161/373 (43%), Gaps = 20/373 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           ++           K   +    L   VAVF PDG ++++  +    +  +          
Sbjct: 252 IRKADSQILLRTRKTLQDVFRTLPLPVAVFDPDGLVEIATESAERYFGMKPGSNVHDLGY 311

Query: 481 RNIAATCSRYYNESDGWDL--FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             +    +  + +  G D     + I  F D R+              + +I+P+P+   
Sbjct: 312 PWMEELLAGTFRKGSGADSGKNKSFIQHFADNREIF-----------FQPTIVPIPSGHP 360

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                      R           + +  E+K S +  VS++LR+PLT +     LL    
Sbjct: 361 AEESSGTALIFR-------DVTQVHEQLELKRSVIATVSHQLRTPLTALRMSIHLLLEEH 413

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G LN +Q+  +      S  L+++++D+LD+  +++G   L+ S +    +  E  +  
Sbjct: 414 TGHLNGQQADLLLAAREESERLVHILDDLLDINRIESGKAHLDLSALSPCRIGAEGMEPF 473

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                +  + I+      L   VADR+ L+ +F+ +LSNA+ F+S G ++ L A  D+G+
Sbjct: 474 LLPCRDQGVSIRNTIPETLPDIVADRESLMHVFANLLSNALRFTSAGGSITLNACEDDGN 533

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             FS+++ G+ I  +  + +F  F     + ++ G+GLGLSIV+  +  HGG V   S+ 
Sbjct: 534 IRFSIEDTGTGIDAEHMEHLFEPFYRVPGQREKNGIGLGLSIVKEIVEAHGGSVDAESTP 593

Query: 779 EGVTTINCRIPSK 791
              +  +  +P +
Sbjct: 594 GKGSRFSFNLPIR 606


>gi|307823560|ref|ZP_07653789.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307735545|gb|EFO06393.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 966

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 16/247 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  +    AD+ K+ F+  +S+E+R+P+  IIG T L   +    L +KQ  Y+  +
Sbjct: 287 ELAEARDQAIAADKSKSEFLSMMSHEIRTPMNAIIGMTRLALQT---DLTAKQQDYLTKV 343

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS  LL ++NDILD + ++AG ++L      L+D+LN++   ++ K  E  ++I+ I+
Sbjct: 344 QISSRALLGIINDILDFSKIEAGKLELETIAFNLDDVLNDLFSLMSGKAEEKGLKIRFIT 403

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------DFIFS 722
              + S  + D  RL Q+   +++NA+ F+S+G  V +K A   G             FS
Sbjct: 404 ADDVPSDLIGDPLRLGQVLLNLVNNAVKFTSRGGDVDIKVALAEGAEQVKSADQIRLEFS 463

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  +  +    +F  F        R   G GLGL+I +  +++ GG ++++S    
Sbjct: 464 VKDTGIGLTTEQIGGLFQSFNQADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNSEIGQ 523

Query: 781 VTTINCR 787
            +T    
Sbjct: 524 GSTFIFT 530


>gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114]
 gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system
           with GacA [Vibrio fischeri ES114]
          Length = 931

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT    SL+  Q  Y++ 
Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT----SLSENQQDYLQT 330

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG + L        D L+EV   +A   HE  + I + 
Sbjct: 331 IERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLK 390

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNG 727
            D ++ S  + D  R+ Q+ + ++ NA+ F+ KG+  + ++      D++   F V++ G
Sbjct: 391 IDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVELKHLTDDYVDLQFVVRDTG 450

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  I+  GG + +SS     +T  
Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFW 510

Query: 786 CRI 788
             I
Sbjct: 511 FTI 513


>gi|32471016|ref|NP_864009.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
 gi|32396718|emb|CAD71683.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
          Length = 1170

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 117/789 (14%), Positives = 244/789 (30%), Gaps = 91/789 (11%)

Query: 50   SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE--------------- 94
            ++A  +    +    I ++     ++         V        +               
Sbjct: 272  AVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGTLTQMNAAGLKMIEANPTA 331

Query: 95   -IIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI 153
             + G     +  P+       F   +   H   L      LR          ET      
Sbjct: 332  NVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDIIGLRGS----RRHMETHAVPLS 387

Query: 154  KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
               G      A  R         ++ E       L  +   F+ L  +   +V+  +   
Sbjct: 388  LTSGETV-QLAVTR---------DITERKRSEATLRENERRFRALTQATSDIVFRMNAD- 436

Query: 214  DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS---SSALEKNFCE--TVST 268
               W+ +   +         + +       F  + +  +     +S  +++F E      
Sbjct: 437  ---WSEMGMLEGRAFIDSTTEPSRSWLDHYFHPDDQTEVRKVVQNSVEKQSFYELEHRVI 493

Query: 269  LEHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEIL----HNLTVA 318
               G       + V +L+  G      G   DV++     +      + L        + 
Sbjct: 494  RIDGTLGWMHSRAVPILDDAGNVVEWFGAGTDVTERKQSEEFQHRATQTLLTVIEQSPLG 553

Query: 319  IAIFDQNRYLQFHN----RSFVELWE-IDLAFLATNPSN------DELLEFLRSANKLPE 367
            I + D +  +   +     +F  +   I   F     +        E +   R   K  E
Sbjct: 554  IYLVDGDFKIAQVSLGAGPAFQNVQPVIGRDFEEVMHTIWPPEFASEAVRIFRHTLKTGE 613

Query: 368  QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
                    E    +    ET    W       ++ I  ++   G +  F + T       
Sbjct: 614  PYVSPGLTEKRKDL---GETESYEWQ------VNRITLADGSYGVVCYFFDTTRLQQAAD 664

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                         D++S+        G     N  +             G     +    
Sbjct: 665  ALRESEVRFRMLADNMSQLAWTCCDLGECNWYNQRWYEYT---------GCTFEEMQGWG 715

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD----SVLEYSIIPLPNAQTMLTFV 543
             R  +  D  D     I       +  + T  L              +P+ + +  +   
Sbjct: 716  WRQVHHPDHVDRVVERIQRAATAGEVWEDTFPLKGRDGQYRWFLSRAVPIRDEEGTIVRW 775

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              T++   E  L E  + L  AD  K+ F+  +++ELR+PL  I    DLL      + +
Sbjct: 776  FGTNTDVNE--LRETQQLLHDADRRKDEFLAMLAHELRNPLAPIRSGLDLLA----IADD 829

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             +    V  +    T ++ LV+D+LD++ +  G ++L    I     + +   ++   + 
Sbjct: 830  DEHRDVVRVMQEQVTHVVRLVDDLLDVSRIMRGKVELRKERIEFQSTVRKAIDAVRDVIE 889

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +   + +    K     AD  R++Q+   +LSNA  +      + L A+  N      +
Sbjct: 890  SHGHSLTITLPEKTVWLEADPVRIVQVLENLLSNATKYMDGSGAIELSASVKNESLFIQI 949

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-EG 780
            K+ G  I ++   ++F  F  +       + G+G+GL++V+  + +HGG++   S     
Sbjct: 950  KDEGIGIDQEFLPNIFELFAQSDRSLDRSKGGLGIGLTLVKQLLEMHGGNIHAESDGLGK 1009

Query: 781  VTTINCRIP 789
             ++ +  +P
Sbjct: 1010 GSSFHIELP 1018



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/573 (12%), Positives = 162/573 (28%), Gaps = 72/573 (12%)

Query: 47  QRNSLAKKVNETYSFLSE-ICDQLSKYHSLLTENNCLTIVWDGKDETP-------EIIGQ 98
            R     +     +  ++ +  Q S+    L  +  + + WD   +T        EI G 
Sbjct: 139 ARVDSIIRRARVKNESADMLQRQKSRLQMALLASRMVAVEWDISADTVLYSENAIEIFGI 198

Query: 99  LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLV---AETQNDCAIKI 155
                         L     +       + K      +  + F          N   + I
Sbjct: 199 KSLSDHATGPTARKL-----VHPDDIDTVEKTIRNTLQGSREFQTQFRIIRPDNGEIVWI 253

Query: 156 EGR-VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           E R    + A  +   L  +  ++       + +       + +FD+    +      G 
Sbjct: 254 EERGYVATDASGKPTKLIAVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGT 313

Query: 215 ILWANISYKKNTET---EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
           +   N +  K  E      +            F +  ++      +      E       
Sbjct: 314 LTQMNAAGLKMIEANPTANVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDIIGLR 373

Query: 272 GNNKSYKIVRVLNSFGE-----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
           G+ +  +   V  S          +  D+++       L         LT A      + 
Sbjct: 374 GSRRHMETHAVPLSLTSGETVQLAVTRDITERKRSEATLRENERRFRALTQA-----TSD 428

Query: 327 YLQFHNRSFVELWEID-LAFLAT--NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
            +   N  + E+  ++  AF+ +   PS   L  +    ++   +   +   E      +
Sbjct: 429 IVFRMNADWSEMGMLEGRAFIDSTTEPSRSWLDHYFHPDDQTEVRKVVQNSVEK-----Q 483

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQ 436
           S    +      +G    +   + P     G  +  F    ++T +   E   +   +  
Sbjct: 484 SFYELEHRVIRIDGTLGWMHSRAVPILDDAGNVVEWFGAGTDVTERKQSEEFQHRATQTL 543

Query: 437 GETIDHLSEGVAVFGPDGRI----KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
              I+    G+ +   D +I      + PAF+++          G     +  T      
Sbjct: 544 LTVIEQSPLGIYLVDGDFKIAQVSLGAGPAFQNVQPV------IGRDFEEVMHTIWPPEF 597

Query: 493 ESDGWDLFAAIITSFDD-------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            S+   +F   + + +        E++   G  E     V   ++       +       
Sbjct: 598 ASEAVRIFRHTLKTGEPYVSPGLTEKRKDLGETESYEWQVNRITLA----DGSYGVVCYF 653

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQ-HVS 577
            D+ R ++A     E      E++   +  ++S
Sbjct: 654 FDTTRLQQAADALRE-----SEVRFRMLADNMS 681



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 83/251 (33%), Gaps = 36/251 (14%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---NGQTLHVIVT---SNPRGG---- 411
           A KL    +  T ++ I +  + S   +  + +    NG+ + +      +    G    
Sbjct: 210 ARKLVHPDDIDTVEKTIRNTLQGSREFQTQFRIIRPDNGEIVWIEERGYVATDASGKPTK 269

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I +  ++T + + E              D   E + V   DG +   N A   + +   
Sbjct: 270 LIAVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGTLTQMNAAGLKMIEANP 329

Query: 472 NRLSPGTHIRNIAA----TCSRYYNE---SDGWDLFAAIITSFDDERKSLQG---TLELL 521
                G  +  + A     C R +NE   S    +    I      R+ ++     L L 
Sbjct: 330 TANVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDIIGLRGSRRHMETHAVPLSLT 389

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S   ++ ++             ++T+  R+E  L E     R   +  +  V  ++ +  
Sbjct: 390 SGETVQLAVT-----------RDITERKRSEATLRENERRFRALTQATSDIVFRMNADW- 437

Query: 582 SPLTNIIGFTD 592
               + +G  +
Sbjct: 438 ----SEMGMLE 444


>gi|301383865|ref|ZP_07232283.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060595|ref|ZP_07252136.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato K40]
 gi|302134767|ref|ZP_07260757.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 775

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 146/368 (39%), Gaps = 6/368 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G +   N     +    E  +        
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVF 318

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 319 YLPQECPQHPDMALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKIT 378

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 379 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 437

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++   
Sbjct: 438 ---QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 494

Query: 663 HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI + ++         +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 495 ADGNIELKELPYLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++    
Sbjct: 555 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 614

Query: 782 TTINCRIP 789
                 +P
Sbjct: 615 CRFTLALP 622


>gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
 gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 927

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|296272592|ref|YP_003655223.1| integral membrane sensor hybrid histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096766|gb|ADG92716.1| integral membrane sensor hybrid histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 765

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 5/246 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N    + +E  +    E    A++ K+ F+  +S+ELR+PL  I+GF+++LK S   +  
Sbjct: 295 NTKKLIESEHQIKLAMEEANSANKAKSIFLARMSHELRTPLNAILGFSNILKKSM--NAT 352

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++   +  I  S   LLN++N+IL+L+ ++AG +++      L +L+ ++    A +  
Sbjct: 353 QEEKNNLNIIKRSGEHLLNIINEILELSKIEAGKIEIIPKVFNLKELIEDINSIFAFRCK 412

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           E  +  K+I D  L   V  D  RL QI   +LSN++ F+++G  + L     +    F 
Sbjct: 413 EKGLEFKIILDDNLPEVVKMDELRLRQILINLLSNSLKFTNEGE-ISLYLYEKSQKLFFE 471

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +K+ G  I     K VF  F    H    + G GLGLSI +  + L  G +   S     
Sbjct: 472 IKDTGIGIESKDLKRVFKPFEQIKHDDYNKNGTGLGLSITKELVTLMNGSIYAKSKVNVG 531

Query: 782 TTINCR 787
           T     
Sbjct: 532 TQFYFS 537


>gi|262173944|ref|ZP_06041621.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus
           MB-451]
 gi|261891302|gb|EEY37289.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus
           MB-451]
          Length = 857

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/495 (18%), Positives = 191/495 (38%), Gaps = 50/495 (10%)

Query: 325 NRYLQFHNRSFVELWEIDLAFLATN--PSNDELLEFLRSANKLPEQLNWKTWKENIF--- 379
           +  +   N +  + + +   FL     P+   +     + N L  + N+  W        
Sbjct: 233 DYVMNSANDAMNDSFIVGQTFLDVEGVPTYLCVYSIQPNKNVLTLRDNFYFWMAFALVSM 292

Query: 380 -------SVYKSSETHKDTWHLPN--GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
                    +       +   L +   + + +   S   G  I+ F+       LE  + 
Sbjct: 293 IAVSIASRWWLQKRIQSEIETLMSYTHKLMELDTKSQFAGSKIYEFDYFG--RTLEQSFR 350

Query: 431 TL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            L    K   +  +       ++   GR+   NP+ +               I+ +    
Sbjct: 351 RLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQ---------------IQFLREDA 395

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLTFVNVT 546
             ++           +IT     +   + T E+    V  +++ P+    Q +       
Sbjct: 396 QNHFLFEILERQLLPMITYAAQGKNPSEVTTEV-DGRVYRWNLSPIMVEGQIISIITQGQ 454

Query: 547 D---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +    L 
Sbjct: 455 DVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PLT 511

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V  + +S   LL ++NDILD + ++ G  ++  S   L +L+  + +      +
Sbjct: 512 DEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCN 571

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  I + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + +      GD    
Sbjct: 572 DKGIELVVESNITSVTLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPLAQ 630

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            +  V + G  I E+    +F  F+       R   G GLGL+IV S + +  G + +SS
Sbjct: 631 LVIQVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSS 690

Query: 777 SDEGVTTINCRIPSK 791
                T    ++P +
Sbjct: 691 EYGHGTRFEIQLPIE 705


>gi|238760599|ref|ZP_04621729.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
 gi|238701186|gb|EEP93773.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
          Length = 1193

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 168/414 (40%), Gaps = 25/414 (6%)

Query: 390 DTWHLPNGQTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           DTW + + Q   +     ++ S       ++ + +  +  ++ K      ++    +   
Sbjct: 519 DTWTIYSAQFYWLTGIFFVLVSTSLVWNYYLRKEVRTRHSIQLKLQEQSTLRETLFNGTP 578

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
               V   +G I   N A+   +  E   L+       + +     +  +        + 
Sbjct: 579 MPTYVVDLEGNILSHNQAWDEFFIQETKNLATMP----LTSREHPLFIINFALTQVRTLP 634

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLP--NAQTMLTFVNVTDSVRAE---RALTEKN 559
                +R  L   +E   D V+ +   P    + + +    +  D    E   + L+   
Sbjct: 635 VKSAPQRYRLSNGVE---DRVILHQSTPFKRSDGELLGLICSWQDMTEYEFLIKELSAAR 691

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +A+  K++F+  +S+E+R+PL+ IIG  +L  T+K      +    ++    S+  
Sbjct: 692 ENAEQANRTKSTFLATMSHEIRTPLSAIIGLLELAVTNKGHPGTEES---IQVAYESAHT 748

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLG 678
           L+ LV DILD+A +++G ++L    +  N+L + V         + ++ +    D     
Sbjct: 749 LMGLVGDILDIAKIESGKLELTLEWMKFNELFSPVIPVFMGLARQKHLELTCDIDVLHPE 808

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDM 734
               D  RL QI   ++SNA+ F+ +GS  + +K    +         V + G  IP+D 
Sbjct: 809 EIYVDPIRLHQIMFNLVSNAIKFTEQGSVDIQVKCLSGSDQQVMLELVVNDTGVGIPQDD 868

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +F+ +  +    ++ G GLGLSI    +++ GG + + S     T I   I
Sbjct: 869 QPQIFSPYKQSDAGKKQVGTGLGLSICAQLVSMMGGTIELFSQPGRGTRITVEI 922


>gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
 gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
          Length = 927

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
 gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
          Length = 927

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|170727693|ref|YP_001761719.1| hybrid sensory histidine kinase BarA [Shewanella woodyi ATCC 51908]
 gi|169813040|gb|ACA87624.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 937

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 14/247 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L++ Q  Y+  
Sbjct: 287 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHTSQQDYINT 342

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+T LL ++NDILD + ++AG + L      L +L+ +    ++    E +I + + 
Sbjct: 343 IEKSATNLLEIINDILDFSKLEAGKLVLESLPFALRELVGDTVTILSNSAREKDIELVID 402

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNN 726
            D  +      D  R+ QI + ++ NA+ F+  GS V L     +G     +    + + 
Sbjct: 403 IDQSVPEALCGDPMRIGQILTNLIGNAIKFTDSGS-VHLSLKLTDGSKDKVNIRCEITDT 461

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I     + +F  F        RR  G GLGL I +  +N  GG +  +S     +T 
Sbjct: 462 GIGIDPQQQEILFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCNSKANEGSTF 521

Query: 785 NCRIPSK 791
              +P +
Sbjct: 522 WFTLPLE 528


>gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
 gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
          Length = 929

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 141/318 (44%), Gaps = 12/318 (3%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++ +   R         +   ++   D  +  +      LS+  +E          
Sbjct: 201 QPISHMISVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHIEMQQSIDQATS 260

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +  +
Sbjct: 261 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 318

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K   LN+ Q  Y+  I  S+  LL ++NDILD + ++AG + L        D L+EV + 
Sbjct: 319 K---LNTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRL 375

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
           +A   HE  + + +  D ++ +  + D  R+ Q+ + ++ NA+ F+  G+  V ++   D
Sbjct: 376 LAPSAHEKGLELTLKIDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSD 435

Query: 716 NGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
             +     F V++ G  I E     +F  F         +  G GLGL I +  ++  GG
Sbjct: 436 VDNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGG 495

Query: 771 HVSISSSDEGVTTINCRI 788
            VS++S     +T    I
Sbjct: 496 EVSLTSRLHQGSTFWFTI 513


>gi|125973908|ref|YP_001037818.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|125714133|gb|ABN52625.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
          Length = 589

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 169/395 (42%), Gaps = 25/395 (6%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            + + S    G + + F  +  +++   +  NT        ++ ++ G+     + ++ L
Sbjct: 215 RIKLKSKDELGQLAVHFNKMASKLERTISDLNTKKIELESIVESITNGIVAVDGNNKVIL 274

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA  +++  + +    G  I N                   +++     + K L+  +
Sbjct: 275 INPAAFTVFNLDADAEILGDDIENHIKNSQ-----------INSLLKDAIQKNKPLEAEV 323

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             +   VL  +  P+    + +        ++           +RK ++I+  FV +V++
Sbjct: 324 A-IDGRVLLVNASPIRPKDSDIDNSGGIVFIQ-------DITKVRKLEQIRTEFVSNVTH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+T I GF + LK   + +      +++E I   +  L  L+NDIL L+ ++  + 
Sbjct: 376 ELKTPITPIRGFIETLKNGAMNN-PVVAERFLEIIDIEAERLHELINDILLLSEIETKLK 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
             N     L  ++++V + +     E  I +      ++    A+  R+ Q+   ++ N 
Sbjct: 435 DTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL-MKANINRMKQLIMNLVDNG 493

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + ++ +  +V +   R++G  + SVK+ G  IP      +F RF        R   G GL
Sbjct: 494 IKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSAHIPRIFERFYRVDKGRSRGMGGTGL 553

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSIV+  +NL+ G + ++S     T    +IP +
Sbjct: 554 GLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIPCQ 588


>gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 623

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/403 (22%), Positives = 177/403 (43%), Gaps = 31/403 (7%)

Query: 409 RGGTIWMFENLTVQVDLETK-----YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           RGG   +      Q + E +        L+ +     +  +E         R+     A 
Sbjct: 70  RGGDAELRARYIEQFEQEERTTRVYLERLLTLSRSNPEASTEAEQFLAAHERLGREYRAA 129

Query: 464 RSLWKTEE--NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            ++++      +L     +R I         + +  DL   ++ S  + R++    L+L 
Sbjct: 130 LAIYQPVAAAPQLEVDRQVRGI---------DREPTDLLDRVVESALEHRRTTLAQLQLA 180

Query: 522 SDSVLEYSIIP----LPNAQTMLTFVNVTDSVR-------AERALTEKNEALRKADEIKN 570
           +     +++I     +  A  +L ++   +  R         R +   N  L +A + K+
Sbjct: 181 ARRHQLWTLILTGALMSGAALLLMWLVDRNIGRPMATATAVARQMDRANAELARAAQAKD 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+PLT+I+G ++ +    LG L+++Q + +  +  + T LL L+NDILD+
Sbjct: 241 EFLAAMSHELRTPLTSILGLSETMGDGLLGPLSAQQEKAIRMVHENGTHLLELINDILDM 300

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + V +G M L +  + ++ L     + I        +++ +  D +      D +RL Q+
Sbjct: 301 SRVASGQMHLRWDQVPVDQLCEASLRLIGPSAKRKGLKVSLTIDPQARLVRGDSRRLKQM 360

Query: 691 FSKILSNAMDFSSKGSTV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
              +L NA+ F+ +G  +   ++A  ++G+  F + + G  IP +  + +F  FV    R
Sbjct: 361 LVNLLGNAVKFTPEGGAIGLDVQADPEHGELRFGIWDTGVGIPREQFERLFQPFVQLDSR 420

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              Q  G GLGL++V     LH G + + S     +    R+P
Sbjct: 421 PARQYDGTGLGLALVSGMAELHQGRIQVESEVGRGSRFEIRLP 463


>gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1240

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 129/286 (45%), Gaps = 22/286 (7%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           DE   L    + ++  + EYS   L    +  T   V    RAE A            + 
Sbjct: 437 DEMGILANVFKSMAGRIFEYSTT-LEQKVSERTSELVESHKRAEIA-----------SKA 484

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ H+S+E+R+P+  IIG + L+  +   SL+ +Q  ++E + +SS +LLN +ND+L
Sbjct: 485 KSNFLAHMSHEVRTPMNAIIGLSQLMLKT---SLDKRQRDFMEKVLSSSDVLLNTINDVL 541

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + ++A  + L+     L D+L  V    A K     + + +  D K+   ++ D  RL
Sbjct: 542 DYSKIEANKLTLDEFQFDLRDVLRRVTNISAYKAQSKGVELLLDVDEKVPFHWIGDPTRL 601

Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI   + SNA+ F+ KG  VI +K     G      FS+ + G  I       +F+ F 
Sbjct: 602 GQILINLASNAVKFTEKGEVVIRVKLLEQQGQLSTLRFSIIDTGIGIDHHRLNQLFSPFT 661

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                   +  G GLGL+I      L  G + + S     +  +  
Sbjct: 662 QIDSSITRKYGGTGLGLAICRQLTELMNGRIWVDSEINKGSQFHFT 707


>gi|229825439|ref|ZP_04451508.1| hypothetical protein GCWU000182_00798 [Abiotrophia defectiva ATCC
           49176]
 gi|229790002|gb|EEP26116.1| hypothetical protein GCWU000182_00798 [Abiotrophia defectiva ATCC
           49176]
          Length = 494

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 152/350 (43%), Gaps = 28/350 (8%)

Query: 445 EGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           E + VFG DGR I  SN A  SL   ++  +    +I            E    D++   
Sbjct: 22  ELIFVFGEDGRYINCSNKARESLGYLQDEDMGKFENIFPNILLEETSLLEHVEADVYRKN 81

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            T F                   +  II   + + ++  ++ T++    R L    E L+
Sbjct: 82  ETCFPA-----------------DVKIIRFEDDKFIVFAIDQTETRNMARELKACKEELK 124

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
              + K  FV ++++ELR+P+  I G T  L  ++   L+S Q + V  I      +  +
Sbjct: 125 SELKYKTEFVSNITHELRTPVNGIQGMTKNLLNTE---LDSFQLETVGIIEQCCVNMSKI 181

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVA 682
           +ND+LD + +++  + L        + LN+V     T ++E  +++ V   D      + 
Sbjct: 182 INDLLDFSKMESDKLVLENKAFSFREFLNKVMAFNVTLVNEKGLKLLVHVGDDIPKYLIG 241

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSV 738
           D  RL QIF+ ++SNA+ F++ G   V     R+  DF+   F V + G  I ++    +
Sbjct: 242 DELRLTQIFNNLISNAVKFTTIGHVAVEASLIREEDDFVELFFMVVDTGIGIAKENMDKL 301

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           F +F        RR  G GLGLSI +  + L GG + + S     ++ + 
Sbjct: 302 FKKFSQVDASTTRRFGGTGLGLSISKKLVELMGGDIKVESEVGKGSSFSF 351


>gi|90580330|ref|ZP_01236137.1| putative sensor histidine kinase/response regulator [Vibrio
           angustum S14]
 gi|90438632|gb|EAS63816.1| putative sensor histidine kinase/response regulator [Vibrio
           angustum S14]
          Length = 931

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 141/318 (44%), Gaps = 12/318 (3%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++ +   R         +   ++   D  +  +      LS+  +E          
Sbjct: 201 QPISHMISVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHIEMQQSIDQATS 260

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +  +
Sbjct: 261 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 318

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K   LN+ Q  Y+  I  S+  LL ++NDILD + ++AG + L        D L+EV + 
Sbjct: 319 K---LNTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRL 375

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
           +A   HE  + + +  D ++ +  + D  R+ Q+ + ++ NA+ F+  G+  V ++   D
Sbjct: 376 LAPSAHEKGLELTLKIDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSD 435

Query: 716 NGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
             +     F V++ G  I E     +F  F         +  G GLGL I +  ++  GG
Sbjct: 436 VDNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGG 495

Query: 771 HVSISSSDEGVTTINCRI 788
            VS++S     +T    I
Sbjct: 496 EVSLTSRLHQGSTFWFTI 513


>gi|121998928|ref|YP_001003715.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590333|gb|ABM62913.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 680

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 154/372 (41%), Gaps = 24/372 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +  LE +   L  +        S  +     +G I+ ++    +L+    + L     I 
Sbjct: 170 RRQLEHRQRELEAIFQAA---TSVSLIKTDLEGIIQETSTGTEALFGYARHEL-----IG 221

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---- 537
              A   R  + +    +   +       R+ +       S     +S+ P+ +A     
Sbjct: 222 RPVALVHRPEDHTQPGTIIERLRNDRTPVRREMPLMRSDGSTFPALFSVHPITDAHDELI 281

Query: 538 -TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T+    +++D  R E+ L        +A   K+ F+  VS++LR+PL  ++GF+ LL  
Sbjct: 282 ATLSVTFDISDQKRVEQELE-------QAVRAKSDFLNAVSHDLRTPLNALMGFSQLLAE 334

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + L     ++ +Y E+       L  L++ +L+L+ + +G M+ +   + L  L+ E   
Sbjct: 335 TDLTP--EERQRYAEHCRRGGERLHGLIDSLLELSRLQSGGMRAHTEPLALPALIEEQCA 392

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                     I +       L  ++  DR RL Q  S ++ NA+ ++  G  V + A+ +
Sbjct: 393 LFRPAAERKGIELACQISADLPRWIQGDRTRLEQALSNLIDNAIKYTEAGH-VRITASAE 451

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                 +V++ G  IP +    +F  F    ++G+++G GLGL+I      L GG++ + 
Sbjct: 452 GEQITLAVEDTGPGIPAENRDRIFAAFDRGNYQGEQQGHGLGLAIAREIAQLMGGNLHLD 511

Query: 776 SSDEGVTTINCR 787
           S     TT    
Sbjct: 512 SEQGRGTTFTLT 523


>gi|320158971|ref|YP_004191349.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
           MO6-24/O]
 gi|319934283|gb|ADV89146.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
           MO6-24/O]
          Length = 857

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 160/398 (40%), Gaps = 30/398 (7%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F ++   ++    +  +  +   +  +     + V+   G +   NPA     
Sbjct: 331 NGSDILEFAHIGHTLENTFEQLESQRRSFQDLFNFALSPMMVWSESGLLIQMNPAAMKEL 390

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             E          ++ +    + +       L  A       +  +L G    + + +  
Sbjct: 391 GIE------HASPQDFSNPLFQLFKLKLSPHLKMAA------QGATLTGINVPIGEKIFR 438

Query: 528 YSIIPL----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ P+      +  ++   ++T  + AE+          ++ + +  F+  +S+E+R+P
Sbjct: 439 WNLSPIVVENGISGIIVQGQDITTLIDAEKQSNLARREAEQSAKTRADFLAKMSHEIRTP 498

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G   LLK S   + N KQ   V+ +  S   LL ++NDILD + ++ G   +   
Sbjct: 499 LNGILGIAQLLKRSVNDAENLKQ---VDVLCNSGEHLLAVLNDILDFSKIEQGKFNIKKR 555

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFS 702
                D LN ++        E  +  ++ +   L      D+ RL QI   ++SNA+ F+
Sbjct: 556 DFNFYDTLNTLENIYRPICREKGVSFEIHNQIPLDCQLHTDQVRLNQIMFNLISNAVKFT 615

Query: 703 SKGSTVILK------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
             G  + +       A  ++      V + G  I E   +S+F  FV        +  G 
Sbjct: 616 PAG-RIEVSFKLEQFARSEHSILSIQVSDTGIGIDESKLESIFEPFVQADSLSTREYGGS 674

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+IV++ + +  G +S+ S     +T    IP ++
Sbjct: 675 GLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIPVEK 712


>gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
          Length = 927

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F        R   G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRCYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|153211921|ref|ZP_01947768.1| sensor protein TorS [Vibrio cholerae 1587]
 gi|124116997|gb|EAY35817.1| sensor protein TorS [Vibrio cholerae 1587]
          Length = 984

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRV 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFWFTLPL 691


>gi|262406077|ref|ZP_06082627.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294648144|ref|ZP_06725687.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806365|ref|ZP_06765209.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|262356952|gb|EEZ06042.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636528|gb|EFF55003.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446433|gb|EFG15056.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 396

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 164/374 (43%), Gaps = 24/374 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           ++     K     +D L + + VF  D  I         L  +       G +  NI  T
Sbjct: 34  SQERFRDKYSTRILDALPDMLTVFDHDANII-------ELASSPATNHVEGINASNITTT 86

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTFV 543
             +     + ++     +       +S     +L+ D VL   E  I PL N   +    
Sbjct: 87  NVKDILPEEAYESVRKNMDKVILTGESSTARHDLMLDGVLHHYENRIFPLDNKYLLCMCR 146

Query: 544 NVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +++    AE+        L        ++D +K++F+ ++S+E+R+PL  I+GF+ L+  
Sbjct: 147 DISQQWEAEQTNAQQQKELKAARVKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI-- 204

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +   +++QY E I  +S +LLNL NDILDL++++A  +K N   I L D+  ++KQ
Sbjct: 205 -TFATSTEEKNQYAEIIERNSEMLLNLFNDILDLSSLEADSLKFNIRPIKLTDICLQLKQ 263

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               K  +N +++ +           D  R++QI S +LSNA  F+ KG  +        
Sbjct: 264 QFCHK-TQNGVKLILDDVDADMYASGDWNRIIQIISNLLSNATKFTPKGE-IHFGYREKE 321

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F VK++G  IP +   ++F RF       Q  G GLGL++    +   GG + + S
Sbjct: 322 DFVEFYVKDSGIGIPAERVATIFRRFGKVNDFVQ--GTGLGLTLCRMLVEKMGGRIWLRS 379

Query: 777 SDEGVTTINCRIPS 790
            +   +     +P 
Sbjct: 380 QEGQGSRFYFTLPL 393


>gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 1800

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1298 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1357

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  G+L+ KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 1358 NAEGNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEA 1417

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +      E  + + V    +L  +   D QRLLQ+   +LSNA+ F+  GS  ++++ AR
Sbjct: 1418 TFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPAR 1477

Query: 715  DN--------------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
            D+                        FSV + G  I     + +F  F         +  
Sbjct: 1478 DDVPQAIREQLLEAGSLTDPDADLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYG 1537

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +   S     +T    +P 
Sbjct: 1538 GTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1575


>gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21]
 gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21]
          Length = 588

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 111/224 (49%), Gaps = 10/224 (4%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+P+  ++G  +LL  S+   L+ KQ  Y + +  S   LL+++NDIL+
Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHSE---LDEKQKSYAKMLHHSGESLLDIINDILN 254

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           ++ ++AG +++      L++      +          + +++  +  +   V  D  RL 
Sbjct: 255 ISKIEAGKLEIERIPFDLHETARGAVELYREVGRGKGVAVELQIEEDVPRCVAGDPNRLR 314

Query: 689 QIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+   +++N + F+ KGS    V L     NG ++ F VK+ G  IP D   ++F+ F  
Sbjct: 315 QVLINVVNNGLKFTEKGSVQVRVSLVEQNQNGQYVGFEVKDTGIGIPADSIGAIFDLFAQ 374

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                 R   G GLGL+I +  + L GG + + S     +T   
Sbjct: 375 VDGSTTRKYGGTGLGLAIAKQLVELMGGEIGVESEPGQGSTFTF 418


>gi|16329279|ref|NP_440007.1| drug sensory protein A [Synechocystis sp. PCC 6803]
 gi|2507379|sp|P20169|DSPA_SYNY3 RecName: Full=Drug sensory protein A
 gi|288420|emb|CAA51377.1| drug sensory protein A [Synechocystis sp. PCC 6803]
 gi|1651759|dbj|BAA16687.1| drug sensory protein A [Synechocystis sp. PCC 6803]
          Length = 663

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 165/401 (41%), Gaps = 24/401 (5%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   +D L    ++G  +   + ++ L NP  R
Sbjct: 254 GELIVNFNEMAERLERYEAQNIEELTAEKAKLDTLVSTIADGAMLVDTNLQLLLVNPTAR 313

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+  E   +     + N+    +    +    +L A   +         Q   +  + +
Sbjct: 314 RLFAWENKPIIGENLLENLPPEITAQLTQP-LRELAADQGSLLFSPGHGPQEEEQDKTYA 372

Query: 525 VLEYSII---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSY 578
             E+ I    P P    ++    +  +    R +    + + +    +E K+ F+ +VS+
Sbjct: 373 PEEFRISLTQPFPRTIRLMLTQVLDQNRENLRGIVMTVQDITREVELNEAKSQFISNVSH 432

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL NI  F + L          ++ +++E  +  +  L  LVND+LDL+ +++  +
Sbjct: 433 ELRTPLFNIKSFIETLSEFGEDLSEVERKEFLETANHETDRLSRLVNDVLDLSKLESSKI 492

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
                 + L  L+ +  +S      +  ++++ I D  L   + +   LLQ+ + ++ N+
Sbjct: 493 -YQLDAVDLYQLIEQSLRSYQLNAKDKQLQLEKILDPDLPFALGNYDLLLQVMTNLIGNS 551

Query: 699 MDFSSKGSTVILKAARDN----------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             F+  G  +I++A   +          G     + + G  I  +   ++F RF    +R
Sbjct: 552 FKFTKAGGKIIVRAYPLHRSNLRAEDGPGLVRVEISDTGIGIDPEDQAAIFERFYRVENR 611

Query: 749 GQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                G GLGLSIV++ I  H   + + S     TT    +
Sbjct: 612 VHTLEGTGLGLSIVKNIIAKHQSQIHLVSEVGVGTTFWFDL 652


>gi|228475150|ref|ZP_04059876.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           hominis SK119]
 gi|314936206|ref|ZP_07843553.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270761|gb|EEK12163.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           hominis SK119]
 gi|313654825|gb|EFS18570.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 565

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 164/380 (43%), Gaps = 42/380 (11%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         T++++   V +    G I ++N A+  ++K +      
Sbjct: 208 DLARRLQKLNNKQKMQSNRLKTTLENIPSSVLMIDKQGEIVIANHAYYEVFKPD------ 261

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV----LEYSIIP 532
                  +   ++ Y      ++   +I SF  E K L   +EL  + V     + S IP
Sbjct: 262 -------SKVENKDYTVHLDKEIQHLVIESFKTE-KPLHEQIELYINDVHQKYFDVSCIP 313

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +         V         +      L+K + ++  FV +VS+EL++P+T+I GF +
Sbjct: 314 ILSKAKKKLQGMVV--------VLHDITNLKKLENLRREFVANVSHELKTPITSIKGFAE 365

Query: 593 LLKTSKLGSLNSKQSQ--YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            L     G+ N +QS   ++  I   S  + +LV D+LDL+ ++    ++  + + L+DL
Sbjct: 366 TLIE---GAKNDEQSLEVFLNIILKESNRIESLVMDLLDLSHIEQ-QTEIETTYVNLSDL 421

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            +    ++ T+    NI IK   +  +    A   +L Q+ + +LSNA+++S + + VI+
Sbjct: 422 AHNTIHNLQTQAKYKNIAIKSEIENDVI-IEAHEGKLSQVITNLLSNAINYSYENNKVIV 480

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
           +  R++      +++ G  I +   K +F RF            G GLGLSI +  +   
Sbjct: 481 RVYREDIKVNLEIQDYGIGIDKKDQKHIFERFYRVDKARSRDSGGTGLGLSITKHIVEAL 540

Query: 769 GGHVSISSSDEGVTTINCRI 788
            G + + S     +      
Sbjct: 541 HGTIMVESELNKGSLFRVSF 560


>gi|322421479|ref|YP_004200702.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320127866|gb|ADW15426.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 484

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 144/316 (45%), Gaps = 25/316 (7%)

Query: 499 LFAAIITSFDDERKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           L +   T+  + R+    T E+ + +  LE S++ L + +         +  + +    E
Sbjct: 161 LLSTYETAIQNNRELASATEEMSALNEQLEESMMEL-DLKNQELLDMNAELEKQQIIAHE 219

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                 +A   K+ F+ ++S+ELR+PL +++GF++LL     G LN+KQ +YV+ I  S 
Sbjct: 220 AKIQAEEASRAKSDFLANMSHELRTPLNSVLGFSELLTDELFGHLNAKQHEYVKNILFSG 279

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLNL+NDILDL+ V+AG   L  S +   +++      +  K  ++++ + +      
Sbjct: 280 RHLLNLINDILDLSKVEAGKSVLEPSMVKFREVIAGTLTLLQEKALKHDVHLGLELPVDC 339

Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------------------DN 716
               +AD ++L QI   +LSNA+ F+  G T+ + A R                      
Sbjct: 340 DIELMADERKLKQIMFNLLSNAVKFTPAGGTIRVTAQRMSRSDLLAAGKYQPGERQPEAE 399

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V+++G  I  +    +F  F         +  G GLGL++ +  + LHGG V +
Sbjct: 400 DFVEITVEDSGIGIKREDIPKLFKEFSQLDSPYTKEYEGTGLGLALTKRLVELHGGQVGV 459

Query: 775 SSSDEGVTTINCRIPS 790
            S     +     IP 
Sbjct: 460 ESEIGQGSRFYFAIPL 475


>gi|213970477|ref|ZP_03398605.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
 gi|213924795|gb|EEB58362.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
          Length = 746

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 146/368 (39%), Gaps = 6/368 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G +   N     +    E  +        
Sbjct: 230 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVF 289

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 290 YLPQECPQHPDMALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKIT 349

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 350 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 408

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   V +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++   
Sbjct: 409 ---QRPQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 465

Query: 663 HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI + ++         +ADRQRL+Q+   +LSNA+ ++     V ++  R       
Sbjct: 466 ADGNIELKELPYLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAEHVTV 525

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++    
Sbjct: 526 SVVDTGYGIAPERLGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEG 585

Query: 782 TTINCRIP 789
                 +P
Sbjct: 586 CRFTLALP 593


>gi|258622613|ref|ZP_05717634.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573]
 gi|258585069|gb|EEW09797.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573]
          Length = 857

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/495 (18%), Positives = 191/495 (38%), Gaps = 50/495 (10%)

Query: 325 NRYLQFHNRSFVELWEIDLAFLATN--PSNDELLEFLRSANKLPEQLNWKTWKENIF--- 379
           +  +   N +  + + +   FL     P+   +     + N L  + N+  W        
Sbjct: 233 DYVMNSANDAMNDSFIVGQTFLDVEGVPTYLCVYSIQPNKNVLTLRDNFYFWMAFALVSM 292

Query: 380 -------SVYKSSETHKDTWHLPN--GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
                    +       +   L +   + + +   S   G  I+ F+       LE  + 
Sbjct: 293 IAVSIASRWWLQKRIQSEIETLMSYTHKLMELDTKSQFAGSKIYEFDYFG--RTLEQSFR 350

Query: 431 TL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            L    K   +  +       ++   GR+   NP+ +               I+ +    
Sbjct: 351 RLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQ---------------IQFLREDA 395

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLTFVNVT 546
             ++           +IT     +   + T E+    V  +++ P+    Q +       
Sbjct: 396 QNHFLFEILERQLLPMITYAAQGKNPSEVTTEV-DGRVYRWNLSPIMVEGQIISIITQGQ 454

Query: 547 D---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +    L 
Sbjct: 455 DVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PLT 511

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V  + +S   LL ++NDILD + ++ G  ++  S   L +L+  + +      +
Sbjct: 512 DEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCN 571

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  I + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + +      GD    
Sbjct: 572 DKGIELVVESNITSATLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPLAQ 630

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            +  V + G  I E+    +F  F+       R   G GLGL+IV S + +  G + +SS
Sbjct: 631 LVIQVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSS 690

Query: 777 SDEGVTTINCRIPSK 791
                T    ++P +
Sbjct: 691 EYGHGTRFEIQLPIE 705


>gi|21229958|ref|NP_635875.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766834|ref|YP_241596.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188989907|ref|YP_001901917.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21111470|gb|AAM39799.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572166|gb|AAY47576.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167731667|emb|CAP49845.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris]
          Length = 767

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 114/263 (43%), Gaps = 10/263 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N         +      E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+
Sbjct: 77  NTAQARMQQELQRHGELEQELLRAKQAAEAASLAKGEFLATMSHEIRTPLNGIIPMLELI 136

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G L+  Q   ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V
Sbjct: 137 SR---GQLSLDQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGV 193

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VI 709
            Q +        +R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       
Sbjct: 194 AQLMQRTAEGKQLRLGLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRR 253

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           L   R      F V++ G  I  D    +F  F        R   G GLGL+I +  I+L
Sbjct: 254 LGETRAQHLLRFQVRDTGIGIAADQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDL 313

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
            GG + + S      T    IP 
Sbjct: 314 MGGRIGVESEPGRGATFWFEIPL 336


>gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
 gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
          Length = 962

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 161/367 (43%), Gaps = 30/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     + L+    +R I   
Sbjct: 362 QLEENEQFNRKIVASAPVGICILRISDGTNILSN----ELAHNYLSLLTYEDRVRIIRII 417

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +     D       ++T  +   +         +++V             +   ++V+
Sbjct: 418 CEQQSKSLD-------VVTGRNHHLQISFVHSRYRNENV------------AICVLLDVS 458

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             VR E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL S  
Sbjct: 459 ARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPSDA 515

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ VE +  SS +LL +++DILD + +++  +K+  S     +++N +  +    + +  
Sbjct: 516 NRLVEAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHIVSNYLPLVVKKR 575

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    D ++    + D  RL Q+ S +LSNA+ F+  G  V      D G  +F V++
Sbjct: 576 LELYCYIDPRVPLQLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVVCSDEGYLVFKVRD 635

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  ++L  G ++I S     + 
Sbjct: 636 TGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSE 695

Query: 784 INCRIPS 790
              RIP 
Sbjct: 696 FGIRIPL 702


>gi|83952587|ref|ZP_00961318.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM]
 gi|83836260|gb|EAP75558.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM]
          Length = 594

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 164/371 (44%), Gaps = 26/371 (7%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           +T  + +       S+ V +   + R   +NPA   ++        PG  +R++ A    
Sbjct: 238 DTEAQGRSLIFYATSDPVLITDSEFRFTGANPAATEIFG--PLLPKPGGSLRSLLA---- 291

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--------QTMLT 541
                      A I+ + D ++ + +G    L+D + E  I+P+ +            ++
Sbjct: 292 ----------LAPILNTLDRDQSTARGAPVPLADRIFEPRILPIESPIRTRRNLLGWTIS 341

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++T+   + +AL E       A+  K+ F+  +S+ELR+P+T++ G  DL      G 
Sbjct: 342 LVDITEREHSAQALREALVRAEAANHAKSQFIAMISHELRTPMTSVKGGLDLALNGFPGE 401

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +    + +     +S  +L L++D+LDL  +D   ++L+   + +++LL  + +  A +
Sbjct: 402 PSEPIRKLLNIAQRNSMRMLKLIDDVLDLQKLDLNTLRLHPVALDMDELLANLLEEHAGQ 461

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  +R+ ++SD        D  R+ Q+   ++SNA+ FS +G+ V L           
Sbjct: 462 ADQAKVRLTIVSDKIGQQVHVDPNRVRQVVGNVISNAIKFSPEGAHVDLSVQLKPEALRL 521

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV+++G  IP      VF RF    +       G GLG+ I +  I   GG +S  S   
Sbjct: 522 SVRDSGIGIPAKSEDRVFGRFHQIESDLTPTHGGSGLGMHIAKVLIERMGGAISYESVLG 581

Query: 780 GVTTINCRIPS 790
             T  +  +P 
Sbjct: 582 QGTVFHIDLPL 592


>gi|227812276|ref|YP_002812286.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|298499508|ref|ZP_07009314.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
 gi|227011418|gb|ACP07629.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|227015228|gb|ACP11437.1| sensor protein TorS [Vibrio cholerae O395]
 gi|297541489|gb|EFH77540.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
          Length = 1020

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 127/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 470 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 529

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L++
Sbjct: 530 LLQDT---TLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVS 586

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 587 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRI 646

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 647 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 706

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 707 GELQLASQLGQGSCFWFTLPL 727


>gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
 gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
          Length = 927

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227082574|ref|YP_002811125.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236]
 gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236]
 gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
          Length = 927

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
 gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
          Length = 927

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1242

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 118/248 (47%), Gaps = 6/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R +  L         A+  K+ F+  +S+E+R+P+  ++G T+LL+ ++   L SKQ
Sbjct: 541 EIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTR---LTSKQ 597

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++V+ +  S   LL +++DILD + ++AG + L      L+ LL++V   +        
Sbjct: 598 RKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQLLDDVVALLEPNARRKA 657

Query: 667 IRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +D        D  RL QI + +L NA+ F+  G   +  +  D+G  +F++ +
Sbjct: 658 LELVYRRADSVPQRMRGDPVRLRQILTNLLGNAIKFTEHGHVGLSASYSDDGRIVFTIAD 717

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  IP D+   +F  F         +  G GLGL I      + GG +++ S+    + 
Sbjct: 718 SGIGIPPDISAQLFRPFQQADSSTARKYGGTGLGLVISRQLAEMMGGTLTLDSAPGKGSV 777

Query: 784 INCRIPSK 791
                P +
Sbjct: 778 FTVTTPFE 785


>gi|294849847|ref|ZP_06790587.1| sensor protein kinase walK [Staphylococcus aureus A9754]
 gi|294823395|gb|EFG39824.1| sensor protein kinase walK [Staphylococcus aureus A9754]
          Length = 608

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 154/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 286 RIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 343

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 344 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++           +I        K      D  ++ Q+F  +++
Sbjct: 443 SDQINKEIIDFNMFINKIINRHEMSA--KDITFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 37.6 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +           D +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGM--------AKEDII 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++   +  +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|302879443|ref|YP_003848007.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582232|gb|ADL56243.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1346

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 162/424 (38%), Gaps = 46/424 (10%)

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +N     I +        D E             ++   +G+ +    G+    N A  +
Sbjct: 427 ANDLAYGIAVLRIRAAHADQEQALRASELRYRLLVEQTVDGIFLANAQGQYIDVNQAGAA 486

Query: 466 LWKTEENRLSPGT--------HIRNIAATCSRY-----------YNESDGWDLFAAIITS 506
           +       +             I  I    +R+           +   DG      ++  
Sbjct: 487 MLGYSTVEICTLNISDVIAIEEIGRIPDEVARFKNGSVVVSEWQFKRKDGSIFLGEVVGR 546

Query: 507 FDDE------------RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-----VTDSV 549
             +             R+  +  L+    + L  +   L     +    +     ++D  
Sbjct: 547 QIENGCIQGILRDITFRREAENELQRARLAALNLAQDALEARAKLEILNDSLESEISDRK 606

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A + L     A   A   K+ F+ ++S+E+R+P+  IIG T +   S+L     KQ  +
Sbjct: 607 LALKDLEIARNAADLASRAKSDFLANMSHEIRTPMNAIIGLTRITLDSELA---PKQRDH 663

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  +S  LLN+++DILD + ++A  +++     +L D++ E       K+ E  + +
Sbjct: 664 LRKVYNASRALLNILDDILDYSKIEANKLEIERVEFILEDVIRECFDLFMQKLQEKELEL 723

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVK 724
            +  D  +  S + D  RL QI + +++NA+ F+ +G   +      +N       FSV+
Sbjct: 724 FIEIDPLISCSLLGDPLRLGQILNNLINNAIKFTQRGEIHIRAALISENNQTLNLKFSVR 783

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + +     +FN F         +  G GLGL+I +  + L GG +S++S  +  +
Sbjct: 784 DTGIGMDQSQQDRLFNAFTQADSSITRKYGGSGLGLTISKRLVELMGGALSVASEKDIGS 843

Query: 783 TINC 786
               
Sbjct: 844 EFTF 847


>gi|239995050|ref|ZP_04715574.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 637

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 11/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E   +A ++K+ F+ ++S+E+R+P+  +IG   LLK S   +L ++QSQ V   S
Sbjct: 81  LKKALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKS---NLTTEQSQRVNIAS 137

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+  LL L+NDILD + ++A  +++      + +L+  + QS+A    E  + + V   
Sbjct: 138 SSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDLS 197

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD----FIFSVKNNGS 728
               S   +D  R+ QI + +LSNA+ F+ +G  +V  +    N         +V + G 
Sbjct: 198 KVSESKINSDPSRIQQILTNLLSNAVKFTEQGELSVTAELLPTNNQNTALMHIAVADTGI 257

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP      +F+ F        RR  G GLGLSI +    L GG +S+++     +  + 
Sbjct: 258 GIPASKLPHLFDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTTELGKGSRFDV 317

Query: 787 R 787
            
Sbjct: 318 T 318


>gi|270294242|ref|ZP_06200444.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275709|gb|EFA21569.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 508

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 167/406 (41%), Gaps = 23/406 (5%)

Query: 393 HLPNGQTLHVIVTS--NPRGGTIWMFENLTV---QVDLETKYNTLVKVQGETIDHLSEGV 447
            + +G+ L++ V      R   I    ++T    Q     KY   ++     +++L    
Sbjct: 112 RIESGEKLYIAVRMVYLNRNYVIAFIRDITEDEVQRRENEKYRFFLE---SILENLPIAT 168

Query: 448 AVFGPD--GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            V   +  GR  + N     + +     +               +  E+D     + I  
Sbjct: 169 TVKDKNDEGRYLIWNKKAAEMMEVPAEDIVGHYEEEFKPLMQDNFIQETDKEVEESEIPQ 228

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S+     + +G   +LS      +++     +      +  D       L    E   +A
Sbjct: 229 SYIKHFVNPKGREYILS---FHKTLVSYNKGKERWIVSSALDIT----ELLAAKEKAEEA 281

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K++F+ ++S+E+R+PL  I+GF+ +L        +    +Y+  I  ++ +LL L+N
Sbjct: 282 NRLKSAFLANMSHEIRTPLNAIVGFSSILSDYIQ---DEDTKEYIHIIEENTQLLLQLIN 338

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL+ ++AGI++     + +N  L+E++     K+    + I+++            +
Sbjct: 339 DILDLSRIEAGILEFTEGDMDVNKTLDEMQTMAKLKLPS-EVSIRLLPGADYCIIHTVPK 397

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ Q+ +  LSNA+  + +G   I           F V++ G  IP +  K VF RFV  
Sbjct: 398 RVRQVLNNYLSNALKHTEEGFIDIGYHLPQEDRIRFFVRDTGCGIPPEKQKDVFERFVKL 457

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                ++G GLGLSI         G V +SS     +     IP +
Sbjct: 458 NSF--KQGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIPYQ 501


>gi|269963512|ref|ZP_06177837.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831687|gb|EEZ85821.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 859

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 151/394 (38%), Gaps = 24/394 (6%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F+++   ++    +     K   +  +     + V+  +  +   NPA R   
Sbjct: 332 GGSDIEEFDHIGSTLESTFEELEAQKKSFRDLFNFALSPIMVWSEESVLIQMNPAARKEL 391

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             E++  +     +      + +   +        +     ++      +   +   +  
Sbjct: 392 VIEDDHETMHPVFQGFKDKLTPHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDI-- 449

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                   +  ++   ++T  + AE+          K+ + +  F+  +S+E+R+P+  I
Sbjct: 450 --------SGIIVQGQDITTLIEAEKQSNIARREAEKSAQARADFLAKMSHEIRTPINGI 501

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LLK S       +Q   ++ +  S   LL ++NDILD + ++ G   +       
Sbjct: 502 LGVAQLLKDSV---ETEEQKNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSF 558

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            D +  ++           + + + +          D+ RL QI   ++SNA+ F+  GS
Sbjct: 559 TDTMRTLENIYRPICSNKGVELVIENKLDPNVEIFTDQVRLNQILFNLVSNAVKFTPSGS 618

Query: 707 TVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
            + L A        DN   +  + + G  I  D    +F  FV       R   G GLGL
Sbjct: 619 -IRLNAELEQFYGADNSVLVVEITDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGL 677

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +IV++ +++  G V + SS    TT    +P K+
Sbjct: 678 TIVKNLVDMLEGDVQVRSSKGVGTTFVVTLPVKD 711


>gi|256840824|ref|ZP_05546332.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|301309911|ref|ZP_07215850.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|256738096|gb|EEU51422.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|300831485|gb|EFK62116.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 423

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 159/373 (42%), Gaps = 12/373 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DG-RIKLSNPAFRSLWKTEENRLSPGT 478
                +   N L  +    + ++   + V    +G R    N A       +   +   T
Sbjct: 38  EMRQSQHTINFLNILMDTILSNVFVEITVKDIFNGFRYIYFNKAAEEFTGVKAEDILGKT 97

Query: 479 HIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                  +   +     D   +    +     E +   G + +++   L  +  P P A 
Sbjct: 98  DFELFPDSRRAHEIRTEDYHTIKTGRMVKEMVEYEKPNGEVRIVNIVRLLIT-NPDPGAS 156

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L  +    + + +  L      +++AD++KN+F+ ++S+E+R+PL  I+GF  L+  +
Sbjct: 157 PLLLVMLNDITEQRQDQLALMK--VQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTET 214

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              S   +Q +Y   I+ +  +LL L+NDILDL+ +++G +  N S + L D+  E    
Sbjct: 215 TNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVV 271

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + KM  +   +             D  R+ Q+   +LSNA+ F+SKG  + L    ++ 
Sbjct: 272 QSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG-FISLFYEVEDM 330

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               SV + G  I E+  +SVF RFV        +G GLGL I +  +   GG + + S 
Sbjct: 331 FVRVSVMDTGIGISEEKLESVFERFVKLDDF--YQGAGLGLPICKMIVEQLGGEIGVRSE 388

Query: 778 DEGVTTINCRIPS 790
               +T    +P 
Sbjct: 389 LGKGSTFWFTLPL 401


>gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
           4028]
 gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
           4028]
          Length = 1356

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 23/314 (7%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           ++             D++  L+   + L +  +E         Q         + +RA+ 
Sbjct: 611 AEQTRALKESERRMQDQQNELRSVNDKLGERAMEL------EEQKSAIRRKNKELLRAQE 664

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  K + L  A   K+ F+ ++S+ELR+PL +I+  + LL  +K G+L+ KQ++    I
Sbjct: 665 QLKLKAQELESASRYKSEFLANMSHELRTPLNSILILSQLLSHNKEGNLSPKQTEAASAI 724

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           ++S   LL L+N+ILDL+ V+AG ++L+   + L  +++++++       E  +   V  
Sbjct: 725 NSSGADLLRLINEILDLSKVEAGKVELHLEEMPLTSMISDLQRVFKGVAVEKGVAFLVEQ 784

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF------------- 719
           D  L  + + D  RL Q+   +LSNA  F+  GS V L  +R   +              
Sbjct: 785 DPALPETMLTDTHRLQQVLRNLLSNAFKFTDHGS-VTLSISRPGPEVDLPEGIPSAEEAI 843

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
             +V + G  IPED   ++F  F        R   G GLGLSI      L GG + + S 
Sbjct: 844 CIAVTDMGIGIPEDKQGTIFEAFRQADGSTSRKYGGTGLGLSISRELTKLLGGEIRLRSQ 903

Query: 778 DEGVTTINCRIPSK 791
           +   +T +  +P +
Sbjct: 904 EGKGSTFSLILPLR 917


>gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395]
 gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
          Length = 927

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|168033671|ref|XP_001769338.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162679444|gb|EDQ65892.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 369

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 127/257 (49%), Gaps = 12/257 (4%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +   + V+A   L    +    A   K+ F+ ++S+E+R+P+  I+G T LL  S+   L
Sbjct: 1   MRTNELVKANNELLISQKRAEHASHAKSDFLANMSHEIRTPIHGILGLTALLLESQ---L 57

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + Q + +  +   + +LL+++N +LDL+ ++AG + +      +  +++   + +  + 
Sbjct: 58  TADQRESLMSVKECADLLLHIINSVLDLSKIEAGRLDIETVPFSIRKMVSSTLRMMQARA 117

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
             +N+++    +G +  + V D  +L Q    ++ NA+ F+++GS V ++          
Sbjct: 118 QAHNLQLLWHIEGAVPDNLVGDPGKLQQCLLNLVGNALKFTNEGS-VTVRIFSQPSTPKT 176

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
            D  F V++ G  I ++  + +FN F        R   G GLGL IV+ F+ L GG +  
Sbjct: 177 VDVEFEVQDTGIGISKEKLQDMFNPFTQADASTSRLYGGTGLGLCIVKRFVELLGGTIWA 236

Query: 775 SSSDEGVTTINCRIPSK 791
            S +   +T   R+P +
Sbjct: 237 ESEENKGSTFGFRVPFR 253


>gi|39997026|ref|NP_952977.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983914|gb|AAR35304.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 793

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 149/326 (45%), Gaps = 25/326 (7%)

Query: 479 HIRNIAATCSRYYNESD--------GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            I  +     R   E +        G D    +++ F+   + ++      SD+ L+ + 
Sbjct: 190 PIAELLEVTRRVAEEHNYSVRAAGGGVDEIGELVSGFNRMLQIIEE-----SDANLKRNR 244

Query: 531 IPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             L       T      +   ERA   L++  EA   A + K+ F+ +VS+E+R+P+  +
Sbjct: 245 EDLGEEVARRTEDLSRTNEELERAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGV 304

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LL  +    L +KQ +Y E I +S  +L+ ++ND+LD + +++G +K+       
Sbjct: 305 LGMVSLLLET---DLQAKQREYAEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAA 361

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++ E+      +  +  + ++    G++    + DR RL Q+   +L NA+ F+ KG+
Sbjct: 362 RRVIEEMATIYGERARQKGVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKGT 421

Query: 707 -TVILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            T+ ++ + + G    S  V + G  IP+DM   +F+ F        RR  G GLGL+IV
Sbjct: 422 ITLTVRGSVEGGVCRLSCIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIV 481

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
              + L GG VS  S     +     
Sbjct: 482 RHLVELMGGTVSCDSEPGCGSVFRFT 507


>gi|330446946|ref|ZP_08310597.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491137|dbj|GAA05094.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 931

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 142/318 (44%), Gaps = 12/318 (3%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++ +   R         +   ++   D  +  +      LS+  +E          
Sbjct: 201 QPISHMISVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHIEMQQSIDQATS 260

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +  +
Sbjct: 261 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 318

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K   LN+ Q  Y+  I  S+  LL ++NDILD + ++AG + L        D L+EV + 
Sbjct: 319 K---LNTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRL 375

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAA 713
           +A   HE  + + +  D ++    + D  R+ Q+ + ++ NA+ F+  G+    V LK+ 
Sbjct: 376 LAPSAHEKGLELTLKIDNRIPPGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSD 435

Query: 714 RDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
            DN  +  F V++ G  I E     +F  F         +  G GLGL I +  ++  GG
Sbjct: 436 IDNNIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGG 495

Query: 771 HVSISSSDEGVTTINCRI 788
            VS++S     +T    I
Sbjct: 496 EVSLTSRLHQGSTFWFTI 513


>gi|227015847|gb|ACP17944.1| putative multi-sensor hybrid histidine kinase [Pseudomonas
           nitroreducens]
          Length = 1215

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 154/379 (40%), Gaps = 12/379 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E + +  +  +   ID +   VAV   +GR+   N ++  +            
Sbjct: 566 VRRRRLSEKELSYRLGFKRALIDGIPHPVAVRDREGRLLTCNRSYLEVTGMTREAAQGSR 625

Query: 479 HIRN--IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            I    + A  ++  ++     +      + D   +     +E+   +   Y        
Sbjct: 626 LIDCDWLPAEQAQALHDELLQAIDQGTALTADRVFRVRGNEMEVYHWAT-PYRGSKGEVL 684

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +  +++VT+  R    L    +   +A+  K++F+  +S+E+R+P+  +IG  +L  T
Sbjct: 685 GLVSGWLDVTERERLHHQLQAAKDQAEEANRAKSTFLATMSHEIRTPMNAVIGMLELALT 744

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                      + VE    S+  LL L+ DILD+A +++G + L      L +L+  + +
Sbjct: 745 RSGQGHWE--REPVEVAYDSAKSLLTLIGDILDVAKIESGRLTLMPERARLRELVESIAR 802

Query: 657 SIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
                  +  + +KV  +       + D  RL QI S ++SNA+ F+ KG   + +   R
Sbjct: 803 VFDGLARQKGLELKVEIEADAACEVLIDPLRLKQILSNLVSNAIKFTDKGQVRIQVGGER 862

Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHG 769
             G  I    +V+++G  I       +F  F   +      R G GLGL+I      + G
Sbjct: 863 LVGGRIALNVAVEDSGIGISTSDQAQLFEPFSQASQNSHASRGGTGLGLTICRKLAEMMG 922

Query: 770 GHVSISSSDEGVTTINCRI 788
           G V + S     T ++  +
Sbjct: 923 GSVCLESQLGYGTRVSVSL 941



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 12/154 (7%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +L    +  ++    L  K+LS  +   + L D +   V  RD+ G +L  N SY + T 
Sbjct: 556 LLWNWRLQVKVRRRRLSEKELSYRLGFKRALIDGIPHPVAVRDREGRLLTCNRSYLEVTG 615

Query: 228 TEGIVFQKAI--------GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--- 276
                 Q +          E  +   +E+ + +   +AL  +    V   E         
Sbjct: 616 MTREAAQGSRLIDCDWLPAEQAQALHDELLQAIDQGTALTADRVFRVRGNEMEVYHWATP 675

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
           Y+  +       +G  +DV++   ++ QL    +
Sbjct: 676 YRGSKGEVLGLVSGW-LDVTERERLHHQLQAAKD 708



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 98/281 (34%), Gaps = 54/281 (19%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-----------IDLAFL 346
           E  ++ +L     ++  +   +A+ D+   L   NRS++E+             ID  +L
Sbjct: 573 EKELSYRLGFKRALIDGIPHPVAVRDREGRLLTCNRSYLEVTGMTREAAQGSRLIDCDWL 632

Query: 347 ---ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                   +DELL+ +     L     ++  + N   VY  +  ++       G+ L   
Sbjct: 633 PAEQAQALHDELLQAIDQGTALTADRVFRV-RGNEMEVYHWATPYR----GSKGEVL--- 684

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET-------IDHLSEGV-----AVFG 451
                  G +  + ++T +  L  +         E        +  +S  +     AV G
Sbjct: 685 -------GLVSGWLDVTERERLHHQLQAAKDQAEEANRAKSTFLATMSHEIRTPMNAVIG 737

Query: 452 -------PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY----NESDGWDLF 500
                    G+           + + ++ L+    I ++A   S         +   +L 
Sbjct: 738 MLELALTRSGQGHWEREPVEVAYDSAKSLLTLIGDILDVAKIESGRLTLMPERARLRELV 797

Query: 501 AAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            +I   FD    +K L+  +E+ +D+  E  I PL   Q +
Sbjct: 798 ESIARVFDGLARQKGLELKVEIEADAACEVLIDPLRLKQIL 838


>gi|262381430|ref|ZP_06074568.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296607|gb|EEY84537.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 423

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 159/373 (42%), Gaps = 12/373 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DG-RIKLSNPAFRSLWKTEENRLSPGT 478
                +   N L  +    + ++   + V    +G R    N A       +   +   T
Sbjct: 38  EMRQSQHTINFLNILMDTILSNVFVEITVKDIFNGFRYIYFNKAAEEFTGVKAEDILGKT 97

Query: 479 HIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                  +   +     D   +    +     E +   G + +++   L  +  P P A 
Sbjct: 98  DFELFPDSRRAHEIRTEDYHTIKTGRMVKEMVEYEKPNGEVRIVNIVRLLIT-NPDPGAS 156

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L  +    + + +  L      +++AD++KN+F+ ++S+E+R+PL  I+GF  L+  +
Sbjct: 157 PLLLIMLNDITEQRQDQLALMK--VQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTET 214

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              S   +Q +Y   I+ +  +LL L+NDILDL+ +++G +  N S + L D+  E    
Sbjct: 215 TNAS---EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVV 271

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + KM  +   +             D  R+ Q+   +LSNA+ F+SKG  + L    ++ 
Sbjct: 272 QSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG-FISLFYEVEDM 330

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               SV + G  I E+  +SVF RFV        +G GLGL I +  +   GG + + S 
Sbjct: 331 FVRVSVMDTGIGISEEKLESVFERFVKLDDF--YQGAGLGLPICKMIVEQLGGEIGVRSE 388

Query: 778 DEGVTTINCRIPS 790
               +T    +P 
Sbjct: 389 LGKGSTFWFTLPL 401


>gi|83942502|ref|ZP_00954963.1| PAS [Sulfitobacter sp. EE-36]
 gi|83846595|gb|EAP84471.1| PAS [Sulfitobacter sp. EE-36]
          Length = 698

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/403 (23%), Positives = 173/403 (42%), Gaps = 48/403 (11%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + +  +      +    I+ L++G  +F    R+ LSN  ++ ++      L PGT    
Sbjct: 299 LQVSERRKRAEVLLSSGIEALNDGFVMFDAQDRLLLSNSKYKEMYDLPSEVLKPGTPFAE 358

Query: 483 IAATCSR-------YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           +     +        YNE +  +   AI      E ++ +    L    V++ S  PL +
Sbjct: 359 LLRIGVKSKQFPMGRYNEEEWIERRLAIHR----ENRTSETEQHLWGGRVIKASDRPLAD 414

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-- 593
              +   V+VT+       L+   +A   A + K  F+  +S+ELR+PLT I+G   L  
Sbjct: 415 GSYVGLRVDVTE-------LSHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSR 467

Query: 594 -----------LKTSKLGSLNSKQSQYV------------EYISASSTILLNLVNDILDL 630
                      LK  + G ++  +++ +              +  S   LL+L+N+ILD+
Sbjct: 468 NARMLSSSKALLKGYEDGEISHAEAKRLLDEMYDQLSGLMNRLVQSGEHLLHLINEILDV 527

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A +++G + +  S   + D+++ V + + T   +  +   V+ +  +    AD+ R  QI
Sbjct: 528 AKIESGSLVIEPSPCAVQDIVDPVIEQLRTLSSKKGLAFDVVQEADM--VFADKVRARQI 585

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              ++ NA+ F+  G  V L          F V ++G+ IPE   +S+F  F        
Sbjct: 586 LFNLIGNAIKFTDTG-FVRLVVKPVGDVVSFEVHDSGAGIPEAELQSIFEVFYQVDSTAT 644

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RR  G G+GL+I  S   + GG +S+SS     +     +P +
Sbjct: 645 RRAGGTGMGLAISRSLAEMQGGSLSVSSVVGQGSCFILTLPIR 687



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 84/250 (33%), Gaps = 16/250 (6%)

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
           F    ++ M+ +              +  + ++      L   G     + VS+     +
Sbjct: 253 FDFSFEEWMLEARTKGG---WPKHAPDQWSKRALIASAGLMLLGTLLYVLQVSERRKRAE 309

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
            L  +   +  L     +FD    L   N  + E++++    L       ELL     + 
Sbjct: 310 VLLSSG--IEALNDGFVMFDAQDRLLLSNSKYKEMYDLPSEVLKPGTPFAELLRIGVKSK 367

Query: 364 KLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           + P  + N + W E   ++++ + T +   HL  G+ +         G  + +  ++T  
Sbjct: 368 QFPMGRYNEEEWIERRLAIHRENRTSETEQHLWGGRVIKASDRPLADGSYVGLRVDVTEL 427

Query: 423 VDLETKYNTLVKVQGETIDHLSE----------GVAVFGPDGRIKLSNPAFRSLWKTEEN 472
              +       K + + +  LS           GVA    + R+  S+ A    ++  E 
Sbjct: 428 SHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSRNARMLSSSKALLKGYEDGEI 487

Query: 473 RLSPGTHIRN 482
             +    + +
Sbjct: 488 SHAEAKRLLD 497


>gi|304310910|ref|YP_003810508.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301796643|emb|CBL44855.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1161

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/427 (20%), Positives = 176/427 (41%), Gaps = 55/427 (12%)

Query: 413 IWMFENLTVQVDL-ETKYNTLVKVQGETIDHL----------SEGVAVFGPDGRIKLSNP 461
           + + + +  +  + E      ++ Q   +D L          ++G+     +GR    N 
Sbjct: 452 LALADQINREKHMREAAQQQTLRAQSAAMDSLKQYEMLYQNAAQGLFTVDAEGRFLRFND 511

Query: 462 AFRSLWKTEENRL-----SPGTHIRNIA---------------ATCSRYYNESDGWDLFA 501
           +   +   ++ +L       G  +++                   C      +DG  ++ 
Sbjct: 512 SVLQILAADKKQLLGSAARSGMKLQDFFPNVSTRDLKSGRVSFENCEFEGRRADGSSVWC 571

Query: 502 AIITSFDDERKSLQGT----LELLSDSVLEYSIIPLPNAQTMLTFVN--VTDSVRAERAL 555
            +      ++ S        LE  S   ++ + +   N  T     N    DSV  E +L
Sbjct: 572 MVTLRTQVKQDSATSNPTDLLETASAGSVDANNVGANNVSTNNADANKAQPDSVNYEGSL 631

Query: 556 ------------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                         + EA  +A + K++F+  +S+E+R+P+  +IG T+LL+ +    L+
Sbjct: 632 IDVTEGVEKEIAQREREAAEQATQAKSAFLATMSHEIRTPMNGVIGMTELLRET---PLD 688

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q+ YV  I  S   L++L+NDILD + +++G +++   ++ L  L++E     A +  
Sbjct: 689 LQQTGYVNTIHNSGMALVSLINDILDYSKIESGKLEVESISLDLMALIDECAAVFAQQSI 748

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N+ + V  D ++    ++D  R+ QI    LSNA  F+  GS  I   +  +G     
Sbjct: 749 SKNLGLYVDIDPQINDRIISDPARIRQILLNFLSNAFKFTETGSVRIRADSLADGRIRIG 808

Query: 723 VKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  + ++  + +F  F     +   +  G GLGL+I +    L GG V + S    
Sbjct: 809 VRDTGIGLSQEQQEKLFQSFSQAEVSTTRKYGGTGLGLAISKRLAELMGGEVGVISESGK 868

Query: 781 VTTINCR 787
            +     
Sbjct: 869 GSEFWFS 875


>gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
 gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
          Length = 927

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|55981112|ref|YP_144409.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55772525|dbj|BAD70966.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 963

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/434 (21%), Positives = 173/434 (39%), Gaps = 33/434 (7%)

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           LRSA  +P     + +K  +   Y+        W    G+   V        G +     
Sbjct: 554 LRSALVIP--FRAQGFKGGLLLGYRRPRRWASGWE---GRLAQV--------GLLLAL-- 598

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +  L        +     ++H  + V V   + RI+  +P+ R++   +        
Sbjct: 599 VLEKARLLAYLEAEEERLRALLEHSQDVVYVLDEEARIRFVSPSVRAVLGYDPEG----- 653

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             R  A     + +  D     A           +L+G   LL          P+P    
Sbjct: 654 -YRRAALDALAFVHPEDQERARALFQELLARPEATLRGEFRLLHQD-----GTPIPVEAW 707

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +           + +    L +A+ +K  F+  VS+ELR+PL  I+G  +LL+   
Sbjct: 708 GRNLLKDPRVGGVVVNVRDLRPRL-EAERLKGEFLAAVSHELRTPLAAILGLAELLRQE- 765

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +  + VE I  S+  L N+V+++LD + ++AG  +++   + L  LL E+ +S 
Sbjct: 766 --PLPPEAQESVELILESAFRLKNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSF 823

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                 + +  +V  + +L     D  R++Q+   +L+NA  F+  G +V L A     +
Sbjct: 824 QGVARLSGVEFRVEVE-ELPLMEVDPDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEE 882

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V++ G  IP++    +F R+    H G R   G GLGL I +  +  HGG + + S
Sbjct: 883 VWVEVQDTGPGIPKEEIPRLFQRYARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVES 942

Query: 777 SDEGVTTINCRIPS 790
            +   +     +P 
Sbjct: 943 EEGKGSLFRVILPL 956


>gi|26986877|ref|NP_742302.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida KT2440]
 gi|24981479|gb|AAN65766.1|AE016202_9 sensory box histidine kinase [Pseudomonas putida KT2440]
          Length = 593

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 153/372 (41%), Gaps = 24/372 (6%)

Query: 422 QVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +    T  + L+   +     +D + +G+ +    GR++  NP  +      ++RL    
Sbjct: 241 RKHQATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRLG--- 297

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537
                 ++        +       ++     +R      +E+  +  +L YS+ P+ + Q
Sbjct: 298 ------SSLVEALQRPELEQQLRQVLRGGSLDRPPDDLNMEVDEESRLLTYSLTPVSHPQ 351

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    +      E+            + +++ FV   S+ELR+P+T +     LL+  
Sbjct: 352 GPILGAVMVLHDVTEQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLRER 402

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 ++++  +E I      L  L+ND+L+ +   +G+ KL  +   ++DLL+  +  
Sbjct: 403 VKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLDHAQSR 462

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A +     I +    D  L    AD  +L ++   +L NA+  ++ G  + L A R   
Sbjct: 463 FAEQAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHAE 522

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I SV++NG  I       +F  FV      ++ G GLGL++ +  + LHGG + + S 
Sbjct: 523 RVIISVEDNGEGISYGQQARIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVFSR 580

Query: 778 DEGVTTINCRIP 789
               T     +P
Sbjct: 581 PGQGTQFYMALP 592



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 34/201 (16%)

Query: 241 RKLFKEEIKKRMISSSALEK-NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI 299
            + F + I+    ++  L K NF  T+   +        + ++   FG    A+   +  
Sbjct: 192 ARRFGQPIEALAKAADQLGKGNFDVTLPVTQAAE-----LNQLTRRFGLMADALRKHQAT 246

Query: 300 TVNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            V++ L        +L ++   + I D+   L+  N         + + L ++       
Sbjct: 247 NVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRLGSS------- 299

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSS---ETHKDTWHLPNGQ----TLHVIVTSNPR 409
                   L E L     ++ +  V +         D     + +    T  +   S+P+
Sbjct: 300 --------LVEALQRPELEQQLRQVLRGGSLDRPPDDLNMEVDEESRLLTYSLTPVSHPQ 351

Query: 410 G---GTIWMFENLTVQVDLET 427
           G   G + +  ++T Q   E 
Sbjct: 352 GPILGAVMVLHDVTEQRAFER 372


>gi|325927769|ref|ZP_08188997.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
 gi|325541970|gb|EGD13484.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
          Length = 754

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 10/250 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q 
Sbjct: 75  HGELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSVDQR 131

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +
Sbjct: 132 DMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQL 191

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFS 722
           R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      F 
Sbjct: 192 RLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQ 251

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S    
Sbjct: 252 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 311

Query: 781 VTTINCRIPS 790
            +T    IP 
Sbjct: 312 GSTFWFEIPL 321


>gi|77359078|ref|YP_338653.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873989|emb|CAI85210.1| putative sensor protein; similar to LuxQ in Vibrio harveyi, similar
           to ArcB sensor in E. coli [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 896

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 9/245 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608
           R  R L ++ +   +A +IK+ F+ ++S+E+R+P+  I G    L    L   + +Q++ 
Sbjct: 508 RQTRTLRQEKQKADEASQIKSQFLANMSHEVRTPINGIKG----LHYLALQQNDWQQART 563

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+E    +  +LL ++ND+LD + ++AG + L    + +  L  EV   I  ++   ++ 
Sbjct: 564 YIEQADGALGVLLRVLNDLLDFSKMEAGKLDLMQEPVDIGRLAEEVINLIQFEVSVKSLE 623

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           IK+  D      +  D  RL Q+   +L+NA+ F+++GS + LK  +       SV + G
Sbjct: 624 IKLDYDKNTNLMINTDAIRLKQVLLNLLNNAVKFTAQGS-ITLKIWQSKTMTYLSVSDTG 682

Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ++  K +F  F    +    Q  G GLGLSI +  + L GG + + S+    +T  
Sbjct: 683 IGISKEAQKKLFRPFAQADNSTSRQYGGTGLGLSICKKLVELMGGAIDLKSTAGQGSTFT 742

Query: 786 CRIPS 790
             +P 
Sbjct: 743 FSLPL 747


>gi|298483936|ref|ZP_07002106.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298269845|gb|EFI11436.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 533

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 165/380 (43%), Gaps = 26/380 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENR---LSPG 477
            + + +     K     ++++   + V  F     +  +N +  + +   E+        
Sbjct: 166 REYKEREVRASKTLSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGDIEHFEGKKCWQ 224

Query: 478 THIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDS--VLEYSIIPL 533
              ++    C  +  +    D       + S+D +R   +    + S +   ++  I   
Sbjct: 225 ALYKDKTGEC-EFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQIA-- 281

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  L
Sbjct: 282 ----HVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASL 337

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  S       ++  YV+ +  ++ +LL L++DILDL+ ++AG +      + +     +
Sbjct: 338 LIES---DDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCED 394

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + ++   K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  ++L+  
Sbjct: 395 IMRNYDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEG-QIMLEYR 452

Query: 714 R--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              ++ +  F+V + G  I  D    VF+RFV        +G GLGLSI  S I   GG 
Sbjct: 453 HKAESNEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSFS--KGTGLGLSICRSIIEHLGGT 510

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S     +      P +
Sbjct: 511 IGVESEMGVGSRFWFTHPLR 530


>gi|187777063|ref|ZP_02993536.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC
           15579]
 gi|187773991|gb|EDU37793.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC
           15579]
          Length = 619

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 168/385 (43%), Gaps = 18/385 (4%)

Query: 422 QVDLETKYNTLVKVQGE-----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           Q +++ +    + ++ E      I +  + + V    G+I  +N   + +   E++    
Sbjct: 207 QKEMQKRSMEQLLIKNENCYNLLIKNSKDAILV-HRYGKIIFANERLKQILGYEKSYNFE 265

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              I+++         ++   DL+     +  F     + +  +   + + + Y+ +P  
Sbjct: 266 DIDIKSLVPKDEYNNIKNKLEDLYCGRKNLVKFQHNITNNKEKIIQNTSTYVIYNGMPTI 325

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +  +    +     + E+ + +  E L +    +++   F+ ++S+EL++PL  I    
Sbjct: 326 FS-ILHDVTSKMQVEKLEQDVKKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAV 384

Query: 592 DLL----KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            LL    K         KQ +Y++ I  +   L+ L+N++LD   +D+G +KLN     +
Sbjct: 385 QLLGFYEKDINKDINYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNI 444

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             L+ E+  S+ +      I I   ++ +      D  ++ +I   +LSN++ F++ G  
Sbjct: 445 VSLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDPDKIERIILNLLSNSIKFTNLGGN 504

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
           + +            VK+ G  IP D  +S+F RF          + G G+GL +V+SF+
Sbjct: 505 IFVNIIDSGDYVYIHVKDTGVGIPSDKLESIFQRFFQVDKTLKKNKEGTGIGLHLVKSFV 564

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            +H G V+I+S     T    ++P+
Sbjct: 565 EMHKGDVTIASELGKGTEFIIKLPA 589


>gi|158337935|ref|YP_001519111.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308176|gb|ABW29793.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 684

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 151/355 (42%), Gaps = 23/355 (6%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKT---EENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           GV ++  D R  L+   F  L          L    ++   +     + +    +  F  
Sbjct: 89  GVLLYYRDWRTILTATVFIYLHHFVLGYGQTLGWPIYVFADSHFWRMFVSHVLYFLPFVG 148

Query: 503 IITSFDDERKSLQGTLELLSDSVL-EYSIIPLPNAQTMLTFVNVTDSVRAER---ALTEK 558
           +++           ++ L  +    +  +I L  A+  LT  N     R E     L   
Sbjct: 149 MMSYL---------SIWLRREGYENQQDLIALRQAEQELTQFNEVLEKRVEERTFELQAA 199

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                +A++ K+ F+ ++S+ELR+PL  I+G+  +L  SK  +L+++    V  I  S +
Sbjct: 200 KLEADRANQAKSEFLANMSHELRTPLNGILGYAQILSRSK--TLSAEDKNGVGVILDSGS 257

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+L+ND+LDLA ++AG ++L  +T  L  LL  V      K  +  ++          
Sbjct: 258 HLLSLINDVLDLAKIEAGKLELFPTTTSLPSLLQRVVDICQIKATQKGLQFLYKPSQLPE 317

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDM 734
             +AD + L Q+   ++ NA+ F+  G+    + +    D     +F V + G  I E+ 
Sbjct: 318 GILADEKLLSQVLINLIGNAIKFTDAGTVTFQIEVHKGSDGQVSLMFKVIDTGRGIAEED 377

Query: 735 CKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +F  F     H  Q  G GLGL+I +  + L GG + I+S     +     +
Sbjct: 378 IDKLFEAFEQVGDHHKQSEGTGLGLAISQRIVQLMGGTIHINSKPGDGSEFWFIL 432


>gi|91778793|ref|YP_554001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691453|gb|ABE34651.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 776

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 164/385 (42%), Gaps = 27/385 (7%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T + +      T++  Q    +HLS+ + +    G I   N     +          G
Sbjct: 268 DITERKEA----QTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERML---------G 314

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVLEYSIIPL 533
             +R I       +   +          +      + +G L  +    S  V E  + PL
Sbjct: 315 YRMREILGKPVAMFLPPEQAPGIRREALAALAAEGTWRGELPFVRHDGSRGVCETVVKPL 374

Query: 534 PNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            NA+      +    ++T+  RAE+ LT  N  L KAD  K+ F+  +++ELR+PL  + 
Sbjct: 375 ANARGDIYGAVSINRDITERRRAEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMR 434

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
              ++L+  +    + + S   +        + +LV+D+L+++ +  G ++L    + L 
Sbjct: 435 NVLEILRLKEFA--DPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGKLELRKQRLELA 492

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             +    ++    +  ++  + V    +    +AD  RL Q+   +L+NA  ++  G ++
Sbjct: 493 RAMQSAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNNAAKYTPPGGSI 552

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
            L A R+  + +  V+++G  IP +   SVF  F   A      + G+G+GL++V     
Sbjct: 553 SLAAEREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLGIGLALVRGLAE 612

Query: 767 LHGGHVSISSS-DEGVTTINCRIPS 790
           LHGG V+  S      +    R+P 
Sbjct: 613 LHGGTVAAFSEGPGKGSEFMIRLPL 637



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 77/281 (27%), Gaps = 31/281 (11%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
              + +A   L  K+L     V  +         W  +      W +   +         
Sbjct: 136 NAEASVAAHQLAQKELQESRDVLSLAMRGARMGAWSHEPKSGRFWWSRELEALAGYAEGR 195

Query: 233 FQKAIGESRKL--------FKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKI 279
           F    G   +L          E +   + +       F    +      +E     +Y  
Sbjct: 196 FASTPGGFFELIHPGDLIALNEAVDHAVETGDDYVAEFRFLHASGDWCWMEGRGRAAYDH 255

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
             V       G+ ID+++       L     I  +L+ AI I D    +   N     + 
Sbjct: 256 HGV--PLMIYGLGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERML 313

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ- 398
              +  +   P          +    PEQ      +       + +   +  +   +G  
Sbjct: 314 GYRMREILGKPV---------AMFLPPEQAPGIRREALAALAAEGTWRGELPFVRHDGSR 364

Query: 399 -TLHVIVTS--NPRG---GTIWMFENLTVQVDLETKYNTLV 433
                +V    N RG   G + +  ++T +   E +   L 
Sbjct: 365 GVCETVVKPLANARGDIYGAVSINRDITERRRAEQQLTRLN 405



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               +H + G+ V   +GRI   N  F      E   L+   HI+++ +   + + ++  
Sbjct: 12  DALFEHAACGLLVTDTNGRILRVNATFCGWLGYEAAELAGARHIQDLLSAGGKVFYQTHW 71

Query: 497 WDLFA 501
             L  
Sbjct: 72  APLLQ 76


>gi|254229567|ref|ZP_04922980.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262394235|ref|YP_003286089.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|151937940|gb|EDN56785.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262337829|gb|ACY51624.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 573

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 119/239 (49%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E    A+  K+ F+  +S+E+R+PL +++G  D+LK S   +L+ +Q   +  +
Sbjct: 200 QLAKAREEAELANRSKSEFLAMMSHEIRTPLNSVLGMLDILKQS---TLSEEQIDALSQM 256

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL +++DILDL+ +++G  +LN   + L D +  V         + +++ K+  
Sbjct: 257 ECSAELLLAIISDILDLSKIESGRFQLNEQWVNLRDTVTFVISQQKQIAKKKSLQFKLNC 316

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                  F  D  RL QI   ++ NA+ F+ +G  V +  +  + + + S+ + G  I +
Sbjct: 317 MVTTDKQFWIDSTRLSQILFNLIGNAIKFTDEGE-VKVSVSEQDTELVISISDTGIGISK 375

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F  F        RR  G GLGL+I +  + +  G + + S +   +T   +IP
Sbjct: 376 AKQEHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGKIIVKSDEHVGSTFTIKIP 434


>gi|159900627|ref|YP_001546874.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159893666|gb|ABX06746.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 3470

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 165/369 (44%), Gaps = 16/369 (4%)

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGT-HIRNIAA 485
            +           +  +SEGV V      +I L NPA   + +   + +   +  +     
Sbjct: 3097 QQREEASKTAAILQSVSEGVMVLDHQTEKIILYNPAAEDVLRIPRSEVMHNSLQVVAAPR 3156

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                 + E     L+A +       ++S  +  ++  L    +  +  P+   ++    V
Sbjct: 3157 NEEELHEEGRSLLLYAGLHEGIQVVQRSEGVHRSMIELPGQSIAANFAPVVGEESSRFGV 3216

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
             V                  +AD  K  FV  VS+ELR+PLT I GF DLL    +G L+
Sbjct: 3217 VVVLRDITRE---------VEADRAKRDFVATVSHELRTPLTPIRGFVDLLLLGAVGQLS 3267

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              Q + +  +  ++  ++ LV D+L++  ++AG + LN +   +N L+ ++  +   ++ 
Sbjct: 3268 DPQREMLNTVKTNAMRMVGLVEDLLEIGRLEAGKIVLNTAPNQINQLVRDIVATWGLEIE 3327

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFS 722
            + N+ +K+  D  L     D +R+ Q+ + ++SNA+ ++  G  VI++    ++      
Sbjct: 3328 KKNMTLKLELDDTLPLIEYDSKRIGQVLTNMVSNAIKYTYAGGDVIIRTFINEDKMIQLD 3387

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            VK+ G  +  +  KS+F RF       R +  G GLGLSI +SFI LH G + + S    
Sbjct: 3388 VKDTGVGLTAEQQKSMFKRFYRADSPLRDEVGGTGLGLSIAKSFIELHNGDMWVQSVYGE 3447

Query: 781  VTTINCRIP 789
             +T +  +P
Sbjct: 3448 GSTFSFSLP 3456



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/409 (14%), Positives = 131/409 (32%), Gaps = 62/409 (15%)

Query: 38   IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIG 97
             I  ++++  +   A    + +  +     +L          +  T+   G+ E  E + 
Sbjct: 2872 TISSLMILATQIGQAINNAQLFDQIRRFNLELE------EIVDQRTLELKGEKERVEALY 2925

Query: 98   QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR-KEGQSFDLVAETQNDCAIKIE 156
             +   +       +LL             L  A   L  + G  F L  E+++       
Sbjct: 2926 NIATELGTTLDRDELL----------LRTLDLAASALMVRRGAVFLLDRESKDLVC---- 2971

Query: 157  GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
                   A L      G+ S       +   L+N       + +  + +V   D   D  
Sbjct: 2972 ------HAVL--NEELGLKSIETRVRFQHPGLAN------WIIEHNEGVV-ISDVWLDER 3016

Query: 217  WANISYKKNTETEGI-----VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            W N    +  +   +     +   A      L+  EI                 VS+  H
Sbjct: 3017 WTNAQSGRGDDVRSVIAVPLLSSDAPQGVLMLYSNEIGFFTQDHLRFLSTIGGEVSSALH 3076

Query: 272  GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQF 330
              +    +    +   +A             ++ + T  IL +++  + + D     +  
Sbjct: 3077 NADLYTLVYDSADRLSDAMW--------QQREEASKTAAILQSVSEGVMVLDHQTEKIIL 3128

Query: 331  HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN----WKTWKENIFSVYKSSE 386
            +N +  ++  I  +      ++ +++   R+  +L E+      +    E I  V +S  
Sbjct: 3129 YNPAAEDVLRIPRS--EVMHNSLQVVAAPRNEEELHEEGRSLLLYAGLHEGIQVVQRSEG 3186

Query: 387  THKDTWHLPNGQTL-----HVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
             H+    LP GQ++      V+   + R G + +  ++T +V+ +    
Sbjct: 3187 VHRSMIELP-GQSIAANFAPVVGEESSRFGVVVVLRDITREVEADRAKR 3234


>gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 597

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 3/259 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  +    +VT + RAE  L E       A   K  F+ +VS+ELR+PL  IIGF+D+L
Sbjct: 297 GAGVICFLADVTAARRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGFSDML 356

Query: 595 KTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            + +L   +  K+ +Y E I  S   LL +VN ILD++ +++G M++        +L ++
Sbjct: 357 ASEQLSPADPSKRREYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQELADQ 416

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             + +  K  +  I +       L   V D++   QI   +LSNA+ F+     V ++  
Sbjct: 417 CVKMMQLKAEQARIALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVAVRLY 476

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
            D      +V ++G  I       + + F   +        G GLGLS+V   + LHGG 
Sbjct: 477 PDGNRLAIAVSDSGIGIAAADLGRLGDPFFQASAAYDRAYEGTGLGLSVVRGLVGLHGGA 536

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++ S+ +  T +  R+P 
Sbjct: 537 IAVESAPQRGTCVTVRLPL 555


>gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus
            degradans 2-40]
 gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 1526

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 121/263 (46%), Gaps = 4/263 (1%)

Query: 530  IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            I+ L             +  + E+  +     L++ D++K+ F+ + S+ELR+PL  I+G
Sbjct: 834  IVLLTWFIHQQRQKVSFERQKVEQERSVVRR-LKQLDKLKDEFLANTSHELRTPLNGIVG 892

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              + L     G L+ K  Q +  I +S   L  LV+D+LD A +    M LN   + ++ 
Sbjct: 893  LAESLMDGVTGPLSHKTKQNLAMIVSSGKRLAGLVDDLLDFAQLKHRGMALNKKAVDIHV 952

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            L++ V       +    I +      +L    AD  RLLQI   ++ NA+ F+ +GS V 
Sbjct: 953  LVDVVLSLTLPIIGAKPIELVNNVSKQLPKVAADESRLLQILHNLVGNAVKFTDEGS-VT 1011

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINL 767
            + A     +   SV + G  +PE+  + +F+ F     A      G GLGLS+ +  + L
Sbjct: 1012 ISAEVQGEEICISVADTGIGVPENRFEEIFDSFRQLEGASNRVYGGTGLGLSVTKQLVEL 1071

Query: 768  HGGHVSISSSDEGVTTINCRIPS 790
            HGG + + S+     T    +P 
Sbjct: 1072 HGGTIGVRSTLGKGATFYFYLPL 1094


>gi|16331636|ref|NP_442364.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001697|dbj|BAA10434.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 417

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + H+ +E R+PLT IIGF  +L+    G LN KQ QYV+    S+  LL+LVND LDL+ 
Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +DA   +L Y  + + DL   V   + TK  E  + + +  D  +     D++R  QI  
Sbjct: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQILI 309

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
            +LSN + F+ KGS V L     +   IFSV + G  I  +  + +F  F   +H     
Sbjct: 310 NLLSNGVKFTPKGS-VTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISHPPSFA 368

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +G GLGL++      LHGG + ++S+    +  +  +P K
Sbjct: 369 EKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLK 409


>gi|302805691|ref|XP_002984596.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii]
 gi|300147578|gb|EFJ14241.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii]
          Length = 468

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 13/257 (5%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                  +   A + L E   A  +A   K+ F+ ++S+E+R+P+  IIG   L   +  
Sbjct: 5   QVQARTNELELANKELQESQAAAEEASRAKSEFLANMSHEIRTPIHAIIGMASLALDT-- 62

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L  +Q ++++ ++ S+  LL++VN ILDLA ++AG ++L +    + DLL+   + + 
Sbjct: 63  -NLTEEQREHLDTVAQSADSLLHIVNTILDLAKIEAGRLELEHVPFNVCDLLSSTMKMLQ 121

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               + ++ +      ++    + D  RL Q    ++ NA+ F+ +GS  +   + D   
Sbjct: 122 VSARQKDLDMSWEVSAEVPQQLIGDAGRLQQCILNLVGNAIKFTQRGSVFLNHVSNDPQR 181

Query: 719 -------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                   +FSVK+ G  I ++  K VF  F        R   G GLGLSIVE  + + G
Sbjct: 182 REEEAVCVLFSVKDTGIGISQEKQKEVFKAFSQADTSITRLYGGTGLGLSIVERLVAMMG 241

Query: 770 GHVSISSSDEGVTTINC 786
           G + + S     +T   
Sbjct: 242 GRIWLESEAGKGSTFYF 258


>gi|284053654|ref|ZP_06383864.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 800

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 11/248 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L+  D++KN F+ + S+ELR+PL   IG  + +     GSL   Q + +  I+
Sbjct: 428 LEAKNAQLQHLDKLKNEFLANTSHELRTPLNGTIGIAESMLDGATGSLTEIQRKNLLTIA 487

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   L NL+NDILD + +    ++L   +I L +L+  V       +    + I     
Sbjct: 488 QTGRRLANLINDILDFSKLRHNHIELQLKSIRLRELVEVVLTLSQPLIKYKQLEIINTIS 547

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNN 726
             L   +AD  RL QI   ++ NA+ F++ G T+ + A   +             ++ + 
Sbjct: 548 DNLPPAMADENRLQQILHNLIGNAIKFTNAG-TIEISAVELDSHGETEKPEWIEITISDT 606

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ED    VF  F         Q  G GLGL++ +  + LHGG + + S     +  
Sbjct: 607 GIGIQEDKIDRVFESFEQADGSTARQYGGTGLGLAVTKKLVELHGGKIWLESEIGVGSRF 666

Query: 785 NCRIPSKE 792
           +  +P  E
Sbjct: 667 HFSLPIAE 674


>gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
 gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
          Length = 714

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ 
Sbjct: 63  ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQADYLQT 118

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG + L        ++L EV    AT  HE  + I + 
Sbjct: 119 IEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLK 178

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNG 727
            D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A RD+  D  F V++ G
Sbjct: 179 IDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTG 238

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 239 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFW 298

Query: 786 CRI 788
             +
Sbjct: 299 FTL 301


>gi|330982346|gb|EGH80449.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 637

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 148/368 (40%), Gaps = 6/368 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G I   N     +    E  +        
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVF 318

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 319 YLQQECPQHPDMALHEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKIT 378

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL+     S 
Sbjct: 379 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPAS- 437

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   + +I  +   LL L+N++LD+A ++AG + L    + L+ +L E    ++   
Sbjct: 438 ---QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMA 494

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI +K + +       VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 495 ADANIELKPLPNLPDEIGVVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAEQVTV 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ +  
Sbjct: 555 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 614

Query: 782 TTINCRIP 789
                 +P
Sbjct: 615 CRFILALP 622


>gi|255535846|ref|YP_003096217.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342042|gb|ACU08155.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 1200

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 153/314 (48%), Gaps = 17/314 (5%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             + +  S   N +   +  +  + + ++E +  Q  L L S+  LE     L     ++
Sbjct: 454 EELQSQHSELENINSELEAQSQKLLASEEELRVQQEEL-LQSNQELEERSALLEEKNMLI 512

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              N+         + +K+  L ++ + K+ F+ ++S+ELR+PL +I+  + L+  S+  
Sbjct: 513 EQRNID--------IQQKSIELEQSTKYKSEFLANMSHELRTPLNSILLLSKLMTESE-- 562

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +  +Y   + +S   LL L+++ILDL+ +++G M L    + L ++ ++++     
Sbjct: 563 DLDEQYVEYAAVMQSSGQGLLTLIDEILDLSKIESGKMTLEIMDVPLAEITDDMRMLFLP 622

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
              + N+ +KV ++ +    +  D+ RL QI   +LSNA+ F+S GS + L+ + D    
Sbjct: 623 MAKDKNLELKVETEAQAPQMLQTDKLRLEQILKNLLSNAIKFTSTGS-ITLQVSGDEAHT 681

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
             IF V + G  I +D  + VF  F       QR   G GLGLSI      L GG +++ 
Sbjct: 682 KIIFKVIDTGIGIAKDKMRLVFEAFQQADGSTQRKYGGTGLGLSISRELARLLGGEITLE 741

Query: 776 SSDEGVTTINCRIP 789
           S++   +     +P
Sbjct: 742 STEGKGSEFTLTVP 755


>gi|253564117|ref|ZP_04841574.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947893|gb|EES88175.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301161586|emb|CBW21126.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis 638R]
          Length = 411

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 180/400 (45%), Gaps = 34/400 (8%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           +++  ++VQ +   ++    K     +  ++    +   D  +  +N  +  L    E  
Sbjct: 23  YLWRKISVQKN---EWVAQTKESDTILRSMNACFILINSDLVVIRTN--YYDLSGISEEP 77

Query: 474 LSPGTHIRNIAATCSRY-------YNESDGWDLFAAIITSFDDER--KSLQGTLELLSDS 524
            S G     +    +         +   +   +   I  +F  ++    L+ ++ LLS  
Sbjct: 78  ASSGRVGDLLNCKNAVRSGGGCGAHKNCENCMIRHTIENAFCHKKGFHKLEASMRLLSSD 137

Query: 525 VLEYSIIPLP------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                IIP              + Q +LT  ++T+    +R L  + E    A+++K++F
Sbjct: 138 --HQQIIPCDVSVSGTYLNNEGHEQMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAF 195

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+GF+ LL +      ++++  Y++ ++ ++  LL +V D+LDL+ 
Sbjct: 196 IANMSHEIRTPLNAIVGFSGLLAS---ADDDTEKKMYLDIVAENNDRLLQIVTDVLDLSK 252

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIF 691
           +++G +  +YS   +NDLL  +   +  ++ +   I++   +        +++ R++QI 
Sbjct: 253 IESGSLDFHYSEFDVNDLLCGLHGILNIRLKDKPEIKLNCEAGTDEWIIYSEQHRIVQII 312

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + ++ NAM F+  G        +   +  F V + G  IP      +F+RF    H  + 
Sbjct: 313 TNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EV 370

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL++ ++ +   GG + + S     +T    +P K
Sbjct: 371 PGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLPLK 410


>gi|254283696|ref|ZP_04958664.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
 gi|219679899|gb|EED36248.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
          Length = 512

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 149/352 (42%), Gaps = 11/352 (3%)

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
               R++  +     L     N +     I +         +      L   +I S +  
Sbjct: 155 DAQQRLQELDQRHAFLAVQRSNAIDNTITITDRITVIGFVSSIVITMLLVVGLIRSANAS 214

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV-----RAERALTEKNEALRKA 565
              L+  +    +  L + I    +A  +       + +     RA   + +       A
Sbjct: 215 LTRLKTGVRRFGEGDLTHRINETRDAGEIRDLARTFNDMSAKLQRAIEEVHDAKADADAA 274

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYISASSTILLN 622
           +  K+ F+ +VS+ELR+PL  IIG++++L+          Q Q+   +  I  S   LL+
Sbjct: 275 NAAKSMFLANVSHELRTPLNAIIGYSEMLQDELSDGQQLDQDQFHHDLGTIIFSGRQLLS 334

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILDL+ ++ G M ++  T+    L+ ++  +++  + + N  + +     L    +
Sbjct: 335 LINDILDLSKMETGKMTVSLETVDPAALIYQICDALSPLITQKNNTLTLSIADDLPEMES 394

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +L QI + + SNA  F+  G  + + A  +    + +VK+NG  I E    +VF  F
Sbjct: 395 DPAKLQQIVTNLFSNACKFTEDG-VIEVIARIEKNSLLIAVKDNGIGIAEAQQANVFEAF 453

Query: 743 VSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                    +  G GLGL+IV  F  + GG +++ S+    +T    +P  +
Sbjct: 454 EQAESSTGSKYGGTGLGLAIVREFCRMLGGDITLESTPGKGSTFTATLPLDQ 505


>gi|295688630|ref|YP_003592323.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430533|gb|ADG09705.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 614

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 160/365 (43%), Gaps = 10/365 (2%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           KY  + ++     D+L++ VA++ P G    S+P+   +                ++   
Sbjct: 105 KYREVDRLYHLLGDNLTDHVALWSPKGERLYSSPSIERISGYSAEEFLNLPPTAMVSGPD 164

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            +                S D E     G++  L  S   YS +   +   ++T  ++T+
Sbjct: 165 FKRVQNVIRGLTPGGPPASVDYECFRKDGSVMWLESS---YSRLGDGSGILLVTSRDITE 221

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R E  + +  E    A   K+ F+ ++++ELR+PLT IIGF ++L+ S  G L+   +
Sbjct: 222 RKRLELDIAKALELAEAASAAKSDFLANMTHELRTPLTAIIGFAEVLRRS--GRLDETAA 279

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +   +I  +S  LL++VND+LD + ++A  ++L+ +      + +     +  +     +
Sbjct: 280 RQAGHILDASNTLLSVVNDVLDFSRLEAAGLELDPAPFDPAAMASSCATLVEERAGAKGL 339

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF--SVK 724
            + V +   +     D  RL Q+    LSNA+ F+++G+ TV L    +    +    V 
Sbjct: 340 AVVVETAEAIAPMNLDGSRLSQVLLNFLSNAVKFTARGAITVRLSQVVEGDQAVLRGEVI 399

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  +  +++F+RF         +  G GLGL+I    I   GG + + S +   +
Sbjct: 400 DTGIGIAPENREAIFDRFSQADAAVSRRFGGTGLGLAISRRIIEHMGGRIGVDSVEGEGS 459

Query: 783 TINCR 787
           T    
Sbjct: 460 TFWFE 464


>gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1005

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 9/259 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M   +   +  R+   L+   E    A+  K+ F+ ++S+ELR+PL  ++G   LL+   
Sbjct: 604 MRGMLEHLERRRSLHRLSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLE--- 660

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L+  Q++ V     S   LL +++DILDL+ ++AG M+L +      + + +V    
Sbjct: 661 AGDLDRDQNELVHIALDSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMF 720

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--- 714
           A       +R++   D        D  RL QI   +L NAM F+ +G+  V + A R   
Sbjct: 721 AQDARIRGLRLRWRCDELPCEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTE 780

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           ++   +FSV + G  IP D   S+F  F        RR  G GLGL IV   ++L GG +
Sbjct: 781 ESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGL 840

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S+    T ++  +P +
Sbjct: 841 NVESALGEGTAVHVCLPFR 859



 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/438 (13%), Positives = 124/438 (28%), Gaps = 45/438 (10%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL--VWHRDQA---GD 214
            G+       ++  +  E      + ++L    ++++ +F+ +  +  VW   +      
Sbjct: 9   HGARMVQAESTIRTLRRERVLHDSQVEQLRRTGALYRSVFERIPVMVFVWRVARDVGASR 68

Query: 215 ILWANI---SYKKNTETEGIVFQKAIGESRKLF--------KEEIKKRMISSSALEKNFC 263
           ++  N    +Y +N    G      + ES  L         +    + +    A      
Sbjct: 69  LIDMNPLAKAYLENVPRNGDDGSPDLPESPDLLGSLLPWLVESPFGEALRRVHAEGGTLE 128

Query: 264 ET--VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTV 317
                     G      I   L       I+ D++        L         ++ N+  
Sbjct: 129 IPALRHGAAGGGRFWRCIFCRLPLGDVIAISEDITAAQETGAALVTSERGYRTLVENIPD 188

Query: 318 AIAIFDQNRYLQFHNRS---FVELWEIDLAFLATNP--SNDELLEFLRSANKLPEQLNWK 372
            +  FD    L F N +   FV    +    +   P      +L  LR   +L    + +
Sbjct: 189 IVVRFDARGRLLFANPALRRFVRSKRLPSGHVTGQPLGQQPAMLRELRERVQLA-MSSGE 247

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG---TIWMFENLTVQVDLETKY 429
             +  +    +      +   +P            P GG    + +  +++        Y
Sbjct: 248 VQRAELEERTRQGRRFFEWRIVPE---------PAPDGGDATVLCIGRDVSAMRRATEDY 298

Query: 430 NTLVKVQGETIDHLSEGV---AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
             L          L E +   A    D R    NPAF  +     + +  G   R++   
Sbjct: 299 RALFNGMLSAF-ALHEIICDGAGVPVDYRFLAVNPAFERMTGLLASEM-VGRTARDVLPG 356

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
               + +  G      +  +F+   + L    ++ +    E     + +  T        
Sbjct: 357 LESEWLQRYGQVALTGVPVTFEAFNRDLGKYFKVSAYRPAERQFACMFHDVTDRVRGREE 416

Query: 547 DSVRAERALTEKNEALRK 564
               A R    +     K
Sbjct: 417 RRSNARRMAALQRIFRMK 434


>gi|148657711|ref|YP_001277916.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569821|gb|ABQ91966.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 577

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/500 (18%), Positives = 178/500 (35%), Gaps = 33/500 (6%)

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           ++++ +   I  +   +     N +  +   I+   L      D++     ++ + P+Q 
Sbjct: 50  DLVNAMNDIILNYRTRQMEYILNAAPADKQRIEKELLDLEQRMDDMFRRYNASYQ-PDQT 108

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW-----MFENLTVQVD 424
               +++      +        +   N          +P  G +      +  N+    +
Sbjct: 109 ERAVFEQVQKDWERYVHLTHTQFIPAN--RNSNTGNVHPSFGRLSPLYGSLQTNIQKVRE 166

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                    +V  ET    S          R  + +  F +L  +    L+   +I    
Sbjct: 167 QSQARAEAARVSVETAYATS----------RFVIVSETFLTLVVSAVIGLTLSGNIARRI 216

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM----- 539
            T           DL   +     DE   L     L+  S+ +  ++       +     
Sbjct: 217 RTLRDATVAVAQGDLDQRVALRGSDELVLLANNFNLMVASLRQQRVLLEERNAELSASLE 276

Query: 540 ---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  ++    +AE A      A   A   K+ F+  +S+ELR+PL  I+G+  LL  
Sbjct: 277 AQRKLMDDLVQRKQAEEAAHRAQAAAEAASHAKSMFLATMSHELRTPLNAILGYVQLLHL 336

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  S+    +E I ++   LL ++++ILD + ++ G M +  +   ++ +  EV  
Sbjct: 337 EAHMRGRSEMLPDLERIRSAGKHLLTIISNILDFSKIEQGKMNVEINPFSVDTVAREVIG 396

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-- 714
            I          + ++     G   +D  ++ QI   +LSNA+ F+ +G TV L   R  
Sbjct: 397 IIDPLARNRKNTLNLVCPPDAGMMQSDAGKVRQILFNLLSNAVKFTEEG-TVTLTVERER 455

Query: 715 --DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGG 770
             D     FSV + G  I  +    +F  F            G GLGL++      L GG
Sbjct: 456 HPDGDWVQFSVADTGIGIAPEQMAHLFQPFYQVHQNRSRNYGGTGLGLALSRQLCRLLGG 515

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + ++S     +    R+P+
Sbjct: 516 DIRVTSEVGRGSVFTVRLPA 535


>gi|60680514|ref|YP_210658.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491948|emb|CAH06708.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 633

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 129/249 (51%), Gaps = 5/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +    RA + + E      +A+++K++F+ ++S+E+R+PL  I+GF++LL    +   
Sbjct: 385 YYIHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLS---MVED 441

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  +Y   I  ++ +LL L+NDILD++ +++G+   + + +  N L++EV+Q    ++
Sbjct: 442 KEEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRI 501

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + + +          F  D+ RL+Q+ + ++ NA+ F+S+G   I    +D     F 
Sbjct: 502 RTDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFY 561

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  +  + C+ VF RFV   +    +G GLGLSI +  I   GG + + S     +
Sbjct: 562 VSDTGCGMSAEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGS 619

Query: 783 TINCRIPSK 791
                +P +
Sbjct: 620 VFWFTLPYR 628


>gi|269960101|ref|ZP_06174478.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835400|gb|EEZ89482.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 639

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 153/318 (48%), Gaps = 24/318 (7%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE- 552
           ++   +F  II       + +   L+LLS +V ++S   +P+   +       +    E 
Sbjct: 155 AEAIKIFLLIIGVLWVTFRLMVKPLQLLSGAVSDFSGGHVPSKVQLPKRWFFDEVGLLEL 214

Query: 553 ---RALTEKNEALRKADEI----------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              R++   +E   + +E           K+ F+  +S+E+R+P+  IIG   LL  +K 
Sbjct: 215 KYNRSVERVSEHQLEIEEARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTK- 273

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+ +Q  +V  I++SS  L+ +++DILD + ++AG ++L  +T  L DLL+EV +   
Sbjct: 274 --LDEQQKDFVSIINSSSNSLMVIIDDILDFSKIEAGKIELETATYNLLDLLHEVGRLHT 331

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            K  +  +++    D +L      D  RL Q+ S +LSNA+ F+ +G   ++ +  +  D
Sbjct: 332 VKAQQKGLQLVCDIDAQLPSEVEGDVGRLKQVLSNLLSNAVKFTERGHVKLMVSQVNRED 391

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                 F V ++G  I ++  ++VF +F        R   G GLGL+I  S + + GG +
Sbjct: 392 DIASVHFRVVDSGIGIAKENQQAVFEKFQQADGSTTRKYGGTGLGLAICSSLVEVMGGEI 451

Query: 773 SISSSDEGVTTINCRIPS 790
            ++S     +     IP 
Sbjct: 452 RLTSEPGLGSCFEFTIPL 469


>gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703]
 gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 918

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 136/317 (42%), Gaps = 12/317 (3%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            IRN+  T  R         +   ++   D  +  +      L+    E           
Sbjct: 200 PIRNMVETVDRIRRGQLDSRVEGRMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYD 259

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +   +    E  L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + + 
Sbjct: 260 LRETLEQMEIQNVE--LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTL 314

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L   Q  Y++ I  S+  LLN++ND+LD + ++AG + L      L++ L+EV   +
Sbjct: 315 KTPLTPTQQDYLQTIERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVVMLL 374

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
           A   HE  + + +     +   F+ D  RL QI + +L NA+ F+ +G+  + ++  +  
Sbjct: 375 AHTAHEKGLELTLNIQHDVPEQFIGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQE 434

Query: 717 GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                    +K+ G  I E     +F  F        RR  G GLGL I +  +   GG 
Sbjct: 435 QHQVLLEIQIKDTGIGIAEIQQAQLFQAFRQADTSISRRHGGTGLGLVITQKLVREMGGD 494

Query: 772 VSISSSDEGVTTINCRI 788
           +S  S     TT  C +
Sbjct: 495 ISFHSKLNQGTTFWCTL 511


>gi|218676825|ref|YP_002395644.1| hypothetical protein VS_II1065 [Vibrio splendidus LGP32]
 gi|218325093|emb|CAV26933.1| Hypothetical protein VS_II1065 [Vibrio splendidus LGP32]
          Length = 1688

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 161/378 (42%), Gaps = 17/378 (4%)

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            +++  D         +     ++      +V   + +++ +N   + L+  E   L    
Sbjct: 944  ISIANDATEALKKAQEQLYNMLNSSPIAASVVFEE-KVRYANDTAKRLFGVEGLDLDS-I 1001

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-Q 537
             + +I  + S   +      L   ++      RKS  GT  +   +++ Y +  L     
Sbjct: 1002 DVASIHDSLSVRDDVHKELMLNGKVVNRELVLRKS-DGTRFV---ALVSYYLFELDGEIA 1057

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            T+    ++++  R    L E+ +    A + K+ F+ ++S+E+R+P+  IIG + L   +
Sbjct: 1058 TLFWAFDISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL---A 1114

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 N     Y+E +  S   LL+++NDILD + ++AG + ++           +V + 
Sbjct: 1115 IGEISNPVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIEL 1174

Query: 658  IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  K +E  + + +  D +L +  + D  RL Q+   ++ NA+ F+  GS  +  A  ++
Sbjct: 1175 MEPKANEKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTETGSVSLTVALVES 1234

Query: 717  GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             D        V + G  I ++    +F  F        RR  G GLGL+I +  +   GG
Sbjct: 1235 DDNSLTMKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGG 1294

Query: 771  HVSISSSDEGVTTINCRI 788
             +S+ S     +  +  +
Sbjct: 1295 QISVGSVFGQGSEFSFVL 1312


>gi|289669452|ref|ZP_06490527.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 769

 Score =  269 bits (688), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 10/252 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                 E+ L    +    A   K  F+  +S+E+R+PL  II   +L+ +   G L+  
Sbjct: 88  QRHGELEQELLRAKQTAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLD 144

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +       
Sbjct: 145 QRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGR 204

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFI 720
            +R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      
Sbjct: 205 QLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLR 264

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S  
Sbjct: 265 FQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEP 324

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 325 GRGSTFWFEIPL 336


>gi|169335265|ref|ZP_02862458.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258003|gb|EDS71969.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM
           17244]
          Length = 818

 Score =  269 bits (688), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/508 (19%), Positives = 206/508 (40%), Gaps = 41/508 (8%)

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN-DELLEFLRSANKLP----EQL 369
           L+  IA  +    +   N +  +        L   P    E+       + +P    E+ 
Sbjct: 29  LSDKIAASNALLRVSMENTNICDFTYYPDEKLCVMPKRTSEVYGCKDKYDNMPIDFAEEY 88

Query: 370 NWKTWKENIFSVYKSSETHK------------DTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
             K++ E+ + +Y      +            D W      T+      NP+   + + E
Sbjct: 89  IDKSYYEDYYRMYNDIHRGEKTSVSIFKAKDRDLWCRVTLSTVRFDEEGNPK-LVVGIVE 147

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +   E +   L  +    I    E +++   + +       + SL  +    +S  
Sbjct: 148 DVTKEKSTEIQNVELNAISEFMIRSDYEFLSIVDLEKQQYSI--KYSSLENSFSRPISYK 205

Query: 478 THIRNIAATCSRYYNESDGWD---LFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIP 532
             I +       Y  + D +        I+   + E++ L        +     E  I  
Sbjct: 206 NQINDRLRDDWIYEEDRDEYRKQMSLDNILNKLNSEKEMLNVYFRSNQNPPRHKECRICY 265

Query: 533 LPNAQ-TMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             N +  ++T  ++ D ++ E     AL E  E+  +A+E K+ F+  +S+++R+P+  I
Sbjct: 266 FENHKKILITLRDIQDMIQKEENNKIALKEAYESAARANEAKSEFLSRMSHDIRTPMNAI 325

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G T + K +       K  + ++ I+ SS  LLNL+N++LD++ +++G + L    I L
Sbjct: 326 FGMTSIAKNNLNDP--DKILECLDKITISSDHLLNLINEVLDMSKIESGKLSLTSEKINL 383

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
             L+ +    I+  + + +  + + + G   S  ++D  RL Q+F  ILSN+M ++ +G 
Sbjct: 384 LHLVEDAITIISPDISKKHQNLSLDTSGVTHSDVISDSLRLRQVFLNILSNSMKYTPEGG 443

Query: 707 TVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGL 758
            + LK           G + F  K++G  + E+    +F  F         +  G GLG+
Sbjct: 444 NIELKVNEVKSTLEGYGRYEFIFKDDGIGMNEEFINKIFAPFERADDSRINKVHGTGLGM 503

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINC 786
           +I +S ++L  G + + S     +    
Sbjct: 504 AITKSIVDLMSGDIVVESKKGRGSKFTV 531


>gi|307610618|emb|CBX00206.1| Legionella transmission sensor LetS [Legionella pneumophila 130b]
          Length = 909

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 14/315 (4%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A   R   +    +    I  S   E   ++     L    L  ++  L +   + T  
Sbjct: 210 IARLRRSMKQILSNEFETEIRVSSPGELGIIEKGCAHLQRQYLN-TVRDLNHHIEIATAD 268

Query: 544 NVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                   E     L+ + +   +    K+ F+ ++S+E+R+P+  +IGFT++L  SKL 
Sbjct: 269 LQQSLELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLD 328

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  YV+ I +S+  LL+++NDILD + +DAG + L+   + +   ++EV    + 
Sbjct: 329 PL---QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDVRGCIDEVLSLASP 385

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
             H+  I +  I+D  +    + D  R+ QI S +++NA+ F+  G   +  K  ++   
Sbjct: 386 NAHKKGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDK 445

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
               +F++ + G  I  +    +F  F         +  G GLGL I +       G +S
Sbjct: 446 DYTLLFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRIS 505

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T + RI
Sbjct: 506 LTSEINKGSTFSARI 520


>gi|293373400|ref|ZP_06619755.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631538|gb|EFF50161.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSPG 477
           +V  +      +K     + +++    +   D  +  +N                R+   
Sbjct: 29  EVHSKENKENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPIQVGGVTKRVGDL 88

Query: 478 THIRN-IAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLP 534
            H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   + +   + 
Sbjct: 89  LHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTPCDVS 148

Query: 535 NAQT----------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            + T          +LT  +VT+   A+R L+ + E    AD++K++F+ ++S+E+R+PL
Sbjct: 149 VSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPL 208

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ L+      S   ++  Y + I+ ++  LL LVNDI DL+ +++G +   Y+ 
Sbjct: 209 NAIVGFSGLM---VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTE 265

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              NDLL E++    TK++ +++ +   +  +     ++R+R++Q+ S +L NAM F+  
Sbjct: 266 FDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTES 325

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G   +  + +   +  F V + G  IP++  K +F+RF+      + +G GLGL++ ++ 
Sbjct: 326 GEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD--REMQGTGLGLTLSQTI 383

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I   GG++ + S     +T +  +P
Sbjct: 384 IQNLGGNLELDSEINRGSTFSFVLP 408


>gi|317471314|ref|ZP_07930673.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901207|gb|EFV23162.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 843

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 178/385 (46%), Gaps = 26/385 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             + FE L   ++L ++  TL   +   +D+L +   V   D  I      F     T E
Sbjct: 306 IAYTFE-LAAFINLSSRSLTLY-TRESVLDNL-QPHYVENYDRTIL----KFVEHHGTSE 358

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           ++    T  R I     R   + +G+D     + S++ +       + +L   V   ++ 
Sbjct: 359 HKEEARTQFR-IETMTERLREKPNGYDF----LFSYEGDNGERFKQINVLWGDVNHRTLC 413

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            +    T +         R E AL    EA    ++ K+ F+  +S+++R+P+  I+G T
Sbjct: 414 LVRADVTEMLTAERQAKKRLEHALASAEEA----NKAKSDFLSAMSHDIRTPMNAIMGMT 469

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             L ++ LG  + + + Y++ I  SS  LL+L+NDILD++ ++   + LN S + +  LL
Sbjct: 470 -TLASAYLGD-DERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPKLL 527

Query: 652 NEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +++   I ++  E  + + + ++G     F  D  R+ QI   +LSNA+ F++KG  V L
Sbjct: 528 DQLSVMILSQAEEAGLTLSIRAEGVNHEDFYGDPLRINQILINLLSNAVKFTNKGGMVEL 587

Query: 711 KAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
            A     +       + F+V++ G  +PE+    +F  F  + +     G GLGLSI + 
Sbjct: 588 LAEEVETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAHIEGTGLGLSITKG 647

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            I+L GG +S+ S     +     +
Sbjct: 648 LIDLMGGKISVESWINEGSVFRVEL 672


>gi|265762536|ref|ZP_06091104.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255144|gb|EEZ26490.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301162051|emb|CBW21595.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 633

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 129/249 (51%), Gaps = 5/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +    RA + + E      +A+++K++F+ ++S+E+R+PL  I+GF++LL    +   
Sbjct: 385 YYIHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLS---MVED 441

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  +Y   I  ++ +LL L+NDILD++ +++G+   + + +  N L++EV+Q    ++
Sbjct: 442 KEEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRI 501

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + + +          F  D+ RL+Q+ + ++ NA+ F+S+G   I    +D     F 
Sbjct: 502 RTDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFY 561

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  +  + C+ VF RFV   +    +G GLGLSI +  I   GG + + S     +
Sbjct: 562 VSDTGCGMSAEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGS 619

Query: 783 TINCRIPSK 791
                +P +
Sbjct: 620 VFWFTLPYR 628


>gi|226309995|ref|YP_002769889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226092943|dbj|BAH41385.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 474

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                 + K +++KN F+  VS+ELR+PLT+I G+ + L +  L     +    +E IS 
Sbjct: 239 NYMATEIGKNEKLKNDFISSVSHELRTPLTSIKGWGETLISGGLEE-PEETMLGLEVISK 297

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L+ LV ++LD +   +G MKL+   + + +LL ++    + + H   I +K+ +  
Sbjct: 298 ETDRLIGLVEELLDFSKFQSGEMKLSRVPMDVRELLQDLHLQFSVRAHAKQIELKLETPP 357

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                + D  RL Q+F  +L NA+ F+ +  ++++ A+      + +V + G  I  +  
Sbjct: 358 TPLIVMGDPNRLKQVFVNLLDNALKFTPQNGSIVIAASLSADRLLVTVTDTGEGINPEDL 417

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             V  +F     R +  G GLGL+I +  I LH G  S+SS+    T+I   +P 
Sbjct: 418 PHVTEKFFKG--RSKLSGSGLGLAICKEIIQLHAGRFSVSSALGQGTSIMVDLPL 470


>gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt
           domain-containing protein [Geobacter bemidjiensis Bem]
 gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator lipoprotein, HAMP and
           Hpt domain-containing protein [Geobacter bemidjiensis
           Bem]
          Length = 818

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 7/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             +    E+ + A+  K+ F+  +S+E+R+P+  ++G T+LL  +    L+ +Q+++VE 
Sbjct: 170 EEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTY---LSKEQARFVES 226

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL ++N+ILD + ++AG M+L      L+ L  +     A       I +   
Sbjct: 227 VRCSGEALLGIINNILDFSKIEAGRMELEMIPFDLHQLTADAVAMFADDAARKGIALSCR 286

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSI 730
            +  L   F  D  RL Q+   +L NA+ F+ +G+  + +   R       +V++ G  I
Sbjct: 287 IEPGLPVMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLVRRPALVRVTVEDTGIGI 346

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +  + +F+ F         +  G GLGL+I +    L GG + +SS     ++ +  
Sbjct: 347 SREAQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGGMELSSEPGKGSSFSFT 405


>gi|238499603|ref|XP_002381036.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus flavus NRRL3357]
 gi|220692789|gb|EED49135.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus flavus NRRL3357]
          Length = 900

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 292 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 349

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 350 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 409

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
            +V  D  RL QI   ++ NA+ F+  G  V L   + + +        F FSV + G  
Sbjct: 410 DYVTGDPFRLRQIILNLVGNAIKFTEHGE-VKLTIRKSDREQCAANEYAFEFSVSDTGIG 468

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 469 IEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 528


>gi|126651383|ref|ZP_01723590.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
 gi|126591912|gb|EAZ85995.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
          Length = 510

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 158/393 (40%), Gaps = 30/393 (7%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +I  S+         +++T   ++E       +     I+++   + + G +G I + N
Sbjct: 144 RMIPLSHSINILARNLQDITTVREVEE------ERLKTLIENMGSSLMMIGREGNISIVN 197

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             F             G  I  +     R        + F   +    +     Q  +E+
Sbjct: 198 RVFLE---------RFGMQIDEVQGKVFRTIGLPKSLEQFIDHVF-LTEMPYRQQIKMEI 247

Query: 521 LSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             +    E    P+         V +      E         L + ++I+  FV +VS+E
Sbjct: 248 KQELYNKEVYGAPVIGDHGRWLGVVIVMHDITE---------LVRLEQIRKDFVANVSHE 298

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+P+T+I GF++ L              ++E I   S  L  L+ D+L+L+ ++     
Sbjct: 299 LRTPITSIKGFSETLLDGAYKD-EKMLISFLEIIYKESNRLQMLIQDLLELSKIEQHGFT 357

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +N   + L D+L    +  A ++ E N+  +V  D  +   + D  R++QI + +++NA+
Sbjct: 358 VNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDRDV-QVMGDANRIIQIVTNLITNAI 416

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
            +S + +TV ++   +    I  +++ G  I +     VF RF        R   G GLG
Sbjct: 417 TYSPENTTVSIRLKENETHGIIEIEDQGIGIEKHEIARVFERFYRVDRARSRNSGGTGLG 476

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+IV+  +  H G + + S     T +   IP 
Sbjct: 477 LAIVKHLVEAHHGRIQVESEVGVGTIMIVMIPK 509


>gi|85058486|ref|YP_454188.1| hybrid sensory histidine kinase BarA [Sodalis glossinidius str.
           'morsitans']
 gi|84779006|dbj|BAE73783.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
          Length = 925

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    L+  Q  Y++ I
Sbjct: 279 ELDLAKKRAQEAVRIKSKFLANMSHELRTPLNGVIGFT---RQTLKTPLSPTQRDYLQTI 335

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+++ND+LD + ++AG + L      L  +L+EV   +A   HE  + + +  
Sbjct: 336 ERSGNHLLSIINDVLDFSKLEAGKLMLETIPFALRAILDEVVILLAHTAHEKGLELILQV 395

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGS 728
             ++    + D  RL Q+ + ++ NA+ F+ +G  +I  +     R+  +    +++ G 
Sbjct: 396 QREVPEYVIGDPLRLQQVMTNLIGNAIKFTEQGHIIIRVSCQGHERERVEINVQIRDTGI 455

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F         +  G GLGL I +  ++  GG ++  S     +T   
Sbjct: 456 GIPERQQSQLFQAFRQADASIARRHGGTGLGLVITQKLVHEMGGEITFRSRTGRGSTFWF 515

Query: 787 RIPSK 791
            IP +
Sbjct: 516 HIPLQ 520


>gi|172058760|ref|YP_001815220.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171991281|gb|ACB62203.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 812

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/510 (20%), Positives = 198/510 (38%), Gaps = 38/510 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQF------HNRSFVELWEIDLAFLAT 348
           ++ +   D +T    ++  +   + I D  N  L F       N     L E +   L  
Sbjct: 320 TETLASRDTVTAYPAVIEKM---VEITDSTNGSLIFKEGTTVTNIISYGLTEQEQDDLIA 376

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVTS 406
             + + ++   R  +K+P    +      I  V  +S  E     + +     LH     
Sbjct: 377 --TIEPVIRRAR-KDKVPHIAQFAQRAVAITPVLDASTDEIIAYIYLMR----LHHPFDP 429

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAF 463
             +         L + +     ++ + + + +T   ++ + E +    PDG I+L N   
Sbjct: 430 QEQEELAAFARQLALSLLRMRTFDEIGREREKTARLLNSIRESIVYIEPDGPIQLINRPL 489

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L+       S    +  I  + +   N  D    F         ER   Q  +   + 
Sbjct: 490 LDLFDHPSAVDSKAEWLIEIDDSITYLKNRVDQLSEF---------ERYLHQTFINRETG 540

Query: 524 SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             + +SI       +T    ++     R    +        + D IKN  V  +S+ELR+
Sbjct: 541 EGITFSIDREKRFIKTYSEEIHYGGKFRGILLVLRDVTNEVEIDRIKNELVSTISHELRT 600

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL++I GFT+L+    L     +Q +Y+  + + +  L  L+ND LDL  ++A   +  +
Sbjct: 601 PLSSIYGFTELMIQRDLPP--HRQKKYLAAVHSETERLSLLINDFLDLQRMEANRQEYTF 658

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               L  ++ ++KQ  +     ++IRI   S+  +     D +++ Q+F  +++NA+ +S
Sbjct: 659 EPFDLLAMMKDLKQLHSLSSSSHDIRI--FSEETVQIINGDSKKIRQLFGNLVNNAIKYS 716

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             G  + ++    N     ++ + G  IP      +F +F    +   R   G GLGLSI
Sbjct: 717 PDGGPIEIRVTEHNNRVTVALTDYGIGIPSSAMSELFQKFYRVDNSDTRQIGGTGLGLSI 776

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  H G + + S +   +T    +P 
Sbjct: 777 CREIARAHDGEIHVESIEGQGSTFTVDLPL 806


>gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 1167

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 149/332 (44%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + E S         +       +  +AE  L  + + L+++ + K+ F+ ++S+EL
Sbjct: 448 TNEQLAEQSKALAEQRDALDRKNEELNMAQAE--LQARADELQRSSKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPKENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEV 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 +  L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVPRLVEGLRTLFQPLATEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +FSV+++G  I  +  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMIVSRQPGAGIVFSVRDSGIGIAPEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +     +P
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFTLVLP 717


>gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1387

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/394 (23%), Positives = 176/394 (44%), Gaps = 31/394 (7%)

Query: 415 MFE-NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           +FE  +T  ++L   + +  ++    +D L+E +A+          N    S+ +TE+  
Sbjct: 561 LFEGQVTAVIEL-ASFRSFSEIHLTFLDQLTESIAIV--------LNTIAASM-RTEQLL 610

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
               +    + +  +   + +   +  A  + + ++  KS Q  L+  ++ + E +   L
Sbjct: 611 KQSQSLAEELQSQQTELTDTNKRLEQQANSLQASEERLKSQQEELQQTNEQLQEKA--RL 668

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            + Q         +  +A +++ EK   L    + K+ F+ ++S+ELR+PL +++    L
Sbjct: 669 LSIQNKEVERKNREIEQARQSVEEKARQLALTSKYKSEFLANMSHELRTPLNSLLILARL 728

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +  G+L+ KQ +Y   I ++   LL L+NDILDLA +++G M +    +   DL ++
Sbjct: 729 LSDNAEGNLSEKQVEYGRTIHSAGADLLGLINDILDLAKIESGTMSVEIEQMHFGDLRSQ 788

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +++      ++  +   V     L  + + D +RL Q+   +LSNA  F++ GS V L+ 
Sbjct: 789 MERIFRQVANDRGLEFAVECAANLPRAMLTDPKRLQQVLKNLLSNAFKFTALGS-VTLRV 847

Query: 713 A--------------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
                          R +G   FSV + G  I  D  + +F  F        R   G GL
Sbjct: 848 EMATGGWDPASESLNRASGVVAFSVIDTGIGIAPDKQRVIFEAFQQADGSTSRKYGGTGL 907

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLSI      L GG + + S     +T    +P 
Sbjct: 908 GLSISREIARLLGGEIQLESEPGRGSTFTLFLPL 941


>gi|192360040|ref|YP_001981948.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686205|gb|ACE83883.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 668

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/453 (21%), Positives = 194/453 (42%), Gaps = 28/453 (6%)

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
             D +++ +R+  +  + L+     +     Y  ++   DT +  N Q   +   +    
Sbjct: 82  DQDSIMDSIRNHLRTRQPLDACYRIQTKAGDYVWTQIRADTLYGENNQPAVMSGVNF--- 138

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSL-WK 468
                  ++T    +E         Q   I   S+G+  +  D G    S+  +  L + 
Sbjct: 139 -------DITELKRVEAALRESEARQVRIIQASSDGIWEWYSDRGGFHFSHRCWELLGYD 191

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---FDDERKSL--QGTLELLSD 523
             ++ L+ G     I        +     D  A  +     FD E + +   G +  +  
Sbjct: 192 DLDDVLTEGEDRLKIWRRHIFPQDLVKFDDALAQHLAGRDFFDVEYRVVCRSGEIRWVRG 251

Query: 524 S---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
               V   S  P+  +    + +++T+  RAE  +    E   KA++ K++F+  +S+EL
Sbjct: 252 RGKAVFNESGKPVMMSG---SNMDITEVKRAEERVLLAKEQAEKANQAKSAFLSSMSHEL 308

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+G+T L +    G+L+ +Q   +  I  +   LL L+ND+LDLA +++G M +
Sbjct: 309 RTPLNAILGYTQLFE--YDGNLSREQVTNIREIRKAGEHLLQLINDVLDLAKIESGKMMV 366

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +   ++++ ++ E    +  +     IR+   ++D +    VAD  R  Q    +LSNA+
Sbjct: 367 SLEPVLVSRVIKECFTFVQPQADALGIRLYATLADQEKTYVVADLVRFKQALLNLLSNAI 426

Query: 700 DFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLG 757
            ++  G  V ++           +V++ G  IP D    VF  F   +A      G G+G
Sbjct: 427 KYNIVGGEVEVRLDVQPMDQLRITVRDTGRGIPADRQHEVFQPFNRLSAENSNIEGSGVG 486

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L I +  + +  G++  SS++   T+    +P+
Sbjct: 487 LVITKQLVEMMHGNLDFSSAEAIGTSFWIDLPT 519


>gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
          Length = 1051

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 122/575 (21%), Positives = 228/575 (39%), Gaps = 54/575 (9%)

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI-AIDVSKEITVND 303
              I  +   ++ L +   ET   +   N++   ++        +   AID+ +++ + +
Sbjct: 67  NPSIPNKADKTAQLIQELKETTPRVFGDNSEVLPLLASFEEASLSMFTAIDIEEKLDIAE 126

Query: 304 -QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            +     +IL NL            + F N S+          L++    + L+ +    
Sbjct: 127 WRADTFEQILLNL----------DKVYFSNVSYE-----TDRHLSSLMQLEWLMFWSTEE 171

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
            +L E L +   K   +      E         L   + + +    N     I  F N  
Sbjct: 172 RRLSEYLIYSANKRLHYDDAVRDEIQSLIQNQQLLVERFVALNANQNQVQLLIETFSNKV 231

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q   E +   L + + + +  L  G  +   + R+ L       +  T E+ L      
Sbjct: 232 FQTSQEFRDQLLNQEELQALSPLKTGAGLAALNTRLAL----LHDIDDTMEHELQTKL-A 286

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDE--RK---SLQGTLELLS------DSVLEYS 529
           + I AT  +         L   ++ S      RK   +L   LE LS      DS L   
Sbjct: 287 QTIKATTQQRLVFIVIMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLSEL 346

Query: 530 IIPLPN--AQTMLTFVNVTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYEL 580
           I                  +  +A++ LT+  E          +A + K+SF+ ++S+E+
Sbjct: 347 IKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSHEI 406

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  +IG +++L  +    L + Q  YV+ I  SS +LL+L+ND+LD + +++G++ +
Sbjct: 407 RTPLNGVIGISEVLADT---PLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLI 463

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +  +  + + + ++   ++ K  E  I + V IS       V D  RL Q+    +SNA+
Sbjct: 464 SPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAV 523

Query: 700 DFSSKGST----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
            F+ +GS       L++        FSV+++G  I E   K +F  F        R   G
Sbjct: 524 KFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGG 583

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL+I    + L GG + + S     +    ++
Sbjct: 584 TGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 916

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 191 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 250

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 251 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 308

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 309 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 364

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 365 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 424

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 425 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 484

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 485 GEISLTSRLHQGSTFWFTL 503


>gi|108762821|ref|YP_628974.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466701|gb|ABF91886.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 531

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/488 (21%), Positives = 192/488 (39%), Gaps = 44/488 (9%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI-FSV 381
           D +    F ++    L    +    T P     LE L          + + W      + 
Sbjct: 55  DPSVRFIFVSKQAERLLGYPVEQWLTEPHF--WLEHLH--------PDDRAWASTYCHTA 104

Query: 382 YKSSETHKDTWHL--PNGQTLHV--IVTSNPRGGTIWMFE----NLTVQVDLETKYNTLV 433
            +    H+  + +   +G+ + +  IVT   + G     +    ++T Q   + +    V
Sbjct: 105 VEQCLPHEFEYRMLAADGRVVWLRDIVTVLSKDGRAHRLQGVMVDVTEQHQAQERLEQTV 164

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
            +   T+D  ++G+ V   DG I   N  F  LW      L+  TH   + A        
Sbjct: 165 SLLEATLDSTADGLLVVDRDGHITACNRQFEQLWGLT--GLAACTHDATLLAAVREKLKA 222

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSV 549
            D     + + + +++  +     +EL +  +LE   +P          + +F +VT+ V
Sbjct: 223 PDA--FLSRVQSLYEEPSQESFDIIELRNGRILERYSLPQRRRGLITGRVWSFRDVTERV 280

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A+R          +A  +++ F+   ++EL++PLT +    +LLK   L +      + 
Sbjct: 281 HAQRTQERLLAEAHEAIRVRDDFLSIAAHELKTPLTPLRLHLELLKR-ALAAREPIAPER 339

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+   A    L  LVND++D  +V+AG +KL    + L ++ NE          E+    
Sbjct: 340 VDKAMAQVDRLSALVNDLVDATSVEAGRLKLQRKPVSLLEVANEACSEFRGLSAEH--AF 397

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                 +    + DR RL Q+ + +L NA+ +S  G TV +  +  +G+ + SV + G  
Sbjct: 398 MCELPQEDLLVMGDRGRLSQVLANLLENAVKYSPLGGTVRVSLSHVDGNAVLSVADGGIG 457

Query: 730 IPEDMCKSVFNRFVSNAHR--------GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           I  +    +F RF   ++         G          I    I  HGGH+ + S     
Sbjct: 458 ISREEQAHLFGRFFRASNAPVSGFGGLGLGL------YICRDIIERHGGHIWVDSELGRG 511

Query: 782 TTINCRIP 789
           +T +  +P
Sbjct: 512 STFHVSLP 519



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 99/263 (37%), Gaps = 26/263 (9%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS-- 254
            L D++D +VW  D +   ++ +   ++        +        +    + +    +  
Sbjct: 42  ALVDNVDGIVWEADPSVRFIFVSKQAERLLGYPVEQWLTEPHFWLEHLHPDDRAWASTYC 101

Query: 255 -SSALEKNFCETVSTLEHGNNKSY---KIVRVLNSFGEA----GIAIDVSKEITVNDQLT 306
            ++  +    E    +   + +      IV VL+  G A    G+ +DV+++    ++L 
Sbjct: 102 HTAVEQCLPHEFEYRMLAADGRVVWLRDIVTVLSKDGRAHRLQGVMVDVTEQHQAQERLE 161

Query: 307 HT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            T       L +    + + D++ ++   NR F +LW +    LA    +  LL  +R  
Sbjct: 162 QTVSLLEATLDSTADGLLVVDRDGHITACNRQFEQLWGLTG--LAACTHDATLLAAVREK 219

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGGTI----WMFE 417
            K P+      +   + S+Y+       D   L NG+ L        R G I    W F 
Sbjct: 220 LKAPD-----AFLSRVQSLYEEPSQESFDIIELRNGRILERYSLPQRRRGLITGRVWSFR 274

Query: 418 NLTVQVDLETKYNTLVKVQGETI 440
           ++T +V  +     L+    E I
Sbjct: 275 DVTERVHAQRTQERLLAEAHEAI 297



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 21/190 (11%)

Query: 151 CAIKIEGRVSGSCAFL-------RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
             +  +GRV      +       R   L G+  ++ E     ++L   +S+ +   DS  
Sbjct: 116 RMLAADGRVVWLRDIVTVLSKDGRAHRLQGVMVDVTEQHQAQERLEQTVSLLEATLDSTA 175

Query: 204 FLVWHRDQAGDILWANISYKK-------NTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
             +   D+ G I   N  +++          T       A+ E  K   +    R+ S  
Sbjct: 176 DGLLVVDRDGHITACNRQFEQLWGLTGLAACTHDATLLAAVREKLK-APDAFLSRVQSLY 234

Query: 257 ALEKNFCETVSTLEHG---NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH 313
                    +  L +G      S    R     G      DV++ +           +L 
Sbjct: 235 EEPSQESFDIIELRNGRILERYSLPQRRRGLITGRVWSFRDVTERVHAQR---TQERLLA 291

Query: 314 NLTVAIAIFD 323
               AI + D
Sbjct: 292 EAHEAIRVRD 301


>gi|15601465|ref|NP_233096.1| sensor protein TorS [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|254849869|ref|ZP_05239219.1| sensor protein TorS [Vibrio cholerae MO10]
 gi|9658128|gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254845574|gb|EET23988.1| sensor protein TorS [Vibrio cholerae MO10]
          Length = 1020

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 127/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 470 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 529

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L++
Sbjct: 530 LLQDT---TLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVS 586

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 587 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRI 646

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 647 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 706

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 707 GELQLASQLGQGSCFWFTLPL 727


>gi|39933394|ref|NP_945670.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39653019|emb|CAE25761.1| sensor histidine kinase with a response regulator receiver domain
           [Rhodopseudomonas palustris CGA009]
          Length = 636

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 118/242 (48%), Gaps = 7/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL    E+   A+  K+  +   S+E+R+PL  IIG + LL  +    L+++Q+ Y + 
Sbjct: 107 RALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDT---PLSAEQATYAKA 163

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL L +++LD A ++AG ++L+    VL+ L+ ++ + +A +     + I   
Sbjct: 164 VKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAAD 223

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSI 730
            D +L  S + D  RL Q+   +  NA+ F+  G   +I++    +G+    V++ G  I
Sbjct: 224 IDERLPVSLIVDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSGELRIIVRDTGIGI 283

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             D    +F+ F            G GLGLSI +  +   GG +++ S     +T    +
Sbjct: 284 APDAQARIFHEFEQADAGIARNFGGTGLGLSISDRIVAAMGGRIALESKPGEGSTFTITL 343

Query: 789 PS 790
           P 
Sbjct: 344 PL 345


>gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 998

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/586 (18%), Positives = 219/586 (37%), Gaps = 40/586 (6%)

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N SY       G++F   I     LF    + + +++ A       +             
Sbjct: 19  NASYFFM--GSGVLFACVILLGMALFVRHTRTQALAAEAEHGRLYASALESHVSE----A 72

Query: 279 IVRVLNSFGEAGIAID-------VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
           +  + ++     +AID        ++   + +   H+   L +++    + D    + F 
Sbjct: 73  LAAIDSALQVLALAIDQQDPDDGATRTTALIEAALHSSTRLRSIS----VLDAGGKVLFS 128

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           +   +   ++DLA L       + +   R           +        + ++       
Sbjct: 129 SNRNLAGTQLDLARLGLTGPQGDTMTPGRPQFVRDFDEAERAQPAPGAGLAQAYVIPFVR 188

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID-HLSEGVAVF 450
                G  + ++V  NP      +F +    +  E    TL+  QG  +    + G AV 
Sbjct: 189 TATLRGVPVKMLVAVNPGS----LFPHYRAVLGAEVTNATLLDYQGNVLAGTAAVGFAVN 244

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
               R+ L     R++   +      G     +    +R +            ++     
Sbjct: 245 QNYARLPLFADLARNVEHGQFRYTMGGEDAYIVNFQAARKFPLVAMVG-----MSEMHAV 299

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           ++   G   L     L  +++ +  A       +  D    E  L +      +A+  + 
Sbjct: 300 QRWSAGAGNLNWLGALLAAVVLVYTAVLWRVMRHRED---VEVELKKAKIVAEQANAARG 356

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+  VS+E+R+P+  +IG + LL+ +   +L+++Q ++   I  S+  L+ ++++ILD 
Sbjct: 357 AFLSTVSHEIRTPMNAVIGMSGLLRET---ALDAQQEEFTVAIEDSANALMVIIDEILDF 413

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + +DAG + +  +   L  L+     ++A K  +  +R+    +  L  +   D  RL Q
Sbjct: 414 SRIDAGKLTIEATDCHLLSLVEGSADALAVKARQQGLRLLCFVEPDLPVTVSVDAGRLRQ 473

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           +   ++ NA+ F+  G   IL    +         F V + G  I   +   +FN FV  
Sbjct: 474 VLLNLIGNAVKFTPAGEVRILVRQVNRQHDLCTVRFEVADTGIGITAPVIALLFNPFVQA 533

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +  G GLGLSI +  + L GGH+ + S     +T    +P
Sbjct: 534 DGSVTRKYGGTGLGLSICKRLVELMGGHIGVDSKPGAGSTFWFELP 579


>gi|160890194|ref|ZP_02071197.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|317481456|ref|ZP_07940522.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860582|gb|EDO54013.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|316902366|gb|EFV24254.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 508

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 167/406 (41%), Gaps = 23/406 (5%)

Query: 393 HLPNGQTLHVIVTS--NPRGGTIWMFENLTV---QVDLETKYNTLVKVQGETIDHLSEGV 447
            + +G+ L++ V      R   I    ++T    Q     KY   ++     +++L    
Sbjct: 112 RIESGEKLYIAVRMVYLNRNYVIAFIRDITEDEVQRRENEKYRFFLE---SILENLPIAT 168

Query: 448 AVFGPD--GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            V   +  GR  + N     + +     +               +  E+D     + I  
Sbjct: 169 TVKDKNDEGRYLIWNKKAAEMMEVPAEDIVGHYEEEFNPLMQDNFIQETDKEVEESEIPQ 228

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S+     + +G   +LS      +++     +      +  D       L    E   +A
Sbjct: 229 SYIKHFVNPKGREYILS---FHKTLVSYNKGKERWIVSSALDIT----ELLAAKEKAEEA 281

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K++F+ ++S+E+R+PL  I+GF+ +L        +    +Y+  I  ++ +LL L+N
Sbjct: 282 NRLKSAFLANMSHEIRTPLNAIVGFSSILSDYIQ---DEDTKEYIHIIEENTQLLLQLIN 338

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL+ ++AGI++     + +N  L+E++     K+    + I+++            +
Sbjct: 339 DILDLSRIEAGILEFTEGDMDVNKTLDEMQTMAKLKLPS-EVSIRLLPGADYCIIHTVPK 397

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ Q+ +  LSNA+  + +G   I           F V++ G  IP +  K VF RFV  
Sbjct: 398 RVRQVLNNYLSNALKHTEEGFIDIGYHLPQEDRIRFFVRDTGCGIPPEKQKDVFERFVKL 457

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                ++G GLGLSI         G V +SS     +     IP +
Sbjct: 458 NSF--KQGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIPYQ 501


>gi|54297835|ref|YP_124204.1| transmission sensor LetS [Legionella pneumophila str. Paris]
 gi|53751620|emb|CAH13039.1| Legionella transmission sensor LetS [Legionella pneumophila str.
           Paris]
          Length = 910

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 14/315 (4%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A   R   +    +    I  S   E   ++     L    L  ++  L +   + T  
Sbjct: 211 IARLRRSMKQILSNEFETEIRVSSPGELGIIEKGCAHLQRQYLN-TVRDLNHHIEIATAD 269

Query: 544 NVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                   E     L+ + +   +    K+ F+ ++S+E+R+P+  +IGFT++L  SKL 
Sbjct: 270 LQQSLELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLD 329

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  YV+ I +S+  LL+++NDILD + +DAG + L+   + +   ++EV    + 
Sbjct: 330 PL---QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASP 386

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
             H+  I +  I+D  +    + D  R+ QI S +++NA+ F+  G   +  K  ++   
Sbjct: 387 NAHKKGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDK 446

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
               +F++ + G  I  +    +F  F         +  G GLGL I +       G +S
Sbjct: 447 DYTLLFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRIS 506

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T + RI
Sbjct: 507 LTSEINKGSTFSARI 521


>gi|300867481|ref|ZP_07112132.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334475|emb|CBN57300.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1174

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 191/448 (42%), Gaps = 23/448 (5%)

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           ++ +   +   L +QL  +    +I    +SS   ++   +   +    + T       I
Sbjct: 487 DITDRKHAEAALQQQLKRERLVNSIQERIRSSLNLEEVMTMAVEEVRKFLST---DRTVI 543

Query: 414 WMF-ENLTVQVDLETKYNTLVKVQGETID--HLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           + F ++ +  + +E+    ++++ G  I+     E        GR++  +  + +     
Sbjct: 544 YRFNQDWSGFIAVESVATGVMQILGIDINDPCFRERYISVYQQGRVRAIDNIYTADISEC 603

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L     I+  A          + W L   I      +R+     +E L    ++ +I
Sbjct: 604 HINLLNQFEIK--ANLVVPILQAENLWGLL--IAHHCSSQRQWHSSEIESLRQIAVQLAI 659

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                         + +   AE+AL +   A   A+  K+ F+  +S+ELR+PL  I+GF
Sbjct: 660 AIQQCTLFEQAKTEIAERKLAEQALRKAVIAADAANLAKSEFLSSMSHELRTPLNAILGF 719

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + ++      SL ++  Q+++ I+ +   LL+L+NDIL+++ ++AG  +LN ++  L  L
Sbjct: 720 SQVMVRD--SSLKNEHQQHLQIINRAGEHLLSLINDILEMSKIEAGKSQLNEASFNLIRL 777

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L  +++    K     +++      ++  FV  D  +L Q+   ++ NA+ F+  GS V 
Sbjct: 778 LGTLEEIFRLKAESKKLQLIFDLSKEVPQFVKGDEGKLRQVLINLVGNAIKFTETGS-VT 836

Query: 710 LKAARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSI 760
           L+    + +          F +++ G  I  +    +F  F      +  ++G GLGL I
Sbjct: 837 LRVKLKSENEISSLALPLQFEIEDTGPGIAAEEMNKLFAPFEQTKTGQKSQQGTGLGLPI 896

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
              F+ + GG +S++S+    +     I
Sbjct: 897 SRKFVQMMGGDISVTSTVGLGSKFAFDI 924


>gi|159029098|emb|CAO90087.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 671

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 126/248 (50%), Gaps = 10/248 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              AE+ L E  EA  KA++ K+ F+ ++S+ELR+PL  I+GFT L+  S+  S++S+  
Sbjct: 188 RYEAEKELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLI--SRDSSISSEYR 245

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           QY+E ++ S   LL L+NDIL+++ ++AG    N S   L  LL+ + + + ++     +
Sbjct: 246 QYLEIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKAL 305

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIF 721
            +       L  ++  D  +L Q+   +L N + F+  G  V L+        D    ++
Sbjct: 306 SLIFDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGG-VTLRVKLGEKREDYQRLLW 364

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +++ G  I  +    +F  F      R  ++G GLGL I + F+ L GG + +SS    
Sbjct: 365 EIEDTGLGIAPEEIYKLFQPFNQTETGRKSQQGTGLGLPISKKFVELMGGAIGVSSILGQ 424

Query: 781 VTTINCRI 788
            +  +  I
Sbjct: 425 GSIFSFDI 432


>gi|52842130|ref|YP_095929.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629241|gb|AAU27982.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 910

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 14/315 (4%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A   R   +    +    I  S   E   ++     L    L  ++  L +   + T  
Sbjct: 211 IARLRRSMKQILSNEFETEIRVSSPGELGIIEKGCAHLQRQYLN-TVRDLNHHIEIATAD 269

Query: 544 NVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                   E     L+ + +   +    K+ F+ ++S+E+R+P+  +IGFT++L  SKL 
Sbjct: 270 LQQSLELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLD 329

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  YV+ I +S+  LL+++NDILD + +DAG + L+   + +   ++EV    + 
Sbjct: 330 PL---QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASP 386

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
             H+  I +  I+D  +    + D  R+ QI S +++NA+ F+  G   +  K  ++   
Sbjct: 387 NAHKKGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDK 446

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
               +F++ + G  I  +    +F  F         +  G GLGL I +       G +S
Sbjct: 447 DYTLLFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRIS 506

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T + RI
Sbjct: 507 LTSEINKGSTFSARI 521


>gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1005

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 9/259 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M   +   +  R+   L+   E    A+  K+ F+ ++S+ELR+PL  ++G   LL+   
Sbjct: 604 MRGMLEHLERRRSLHRLSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLE--- 660

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L+  Q++ V     S   LL +++DILDL+ ++AG M+L +      + + +V    
Sbjct: 661 AGDLDRDQNELVHIALDSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMF 720

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--- 714
           A       +R++   D        D  RL QI   +L NAM F+ +G+  V + A R   
Sbjct: 721 AQDARIRGLRLRWRCDELPCEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTE 780

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           ++   +FSV + G  IP D   S+F  F        RR  G GLGL IV   ++L GG +
Sbjct: 781 ESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGL 840

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S+    T ++  +P +
Sbjct: 841 NVESALGEGTAVHVCLPFR 859



 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/440 (13%), Positives = 126/440 (28%), Gaps = 50/440 (11%)

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL--VWHRDQA--- 212
           R+  + + +R      +  E      + ++L    ++++ +F+ +  +  VW   +    
Sbjct: 12  RMVQAESTIR-----TLRRERVLHDSQVEQLRRTGALYRSVFERIPVMVFVWRVARDVGA 66

Query: 213 GDILWANI---SYKKNTETEGIVFQKAIGESRKLF--------KEEIKKRMISSSALEKN 261
             ++  N    +Y +N    G      + ES  L         +    + +    A    
Sbjct: 67  SRLIDMNPLAKAYLENVPRNGDDGSPDLPESPDLLGSLLPWLVESPFGEALRRVHAEGGT 126

Query: 262 FCET--VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNL 315
                       G      I   L       I+ D++        L         ++ N+
Sbjct: 127 LEIPALRHGAAGGGRFWRCIFCRLPLGDVIAISEDITAAQETGAALVTSERGYRTLVENI 186

Query: 316 TVAIAIFDQNRYLQFHNRS---FVELWEIDLAFLATNP--SNDELLEFLRSANKLPEQLN 370
              +  FD    L F N +   FV    +    +   P      +L  LR   +L    +
Sbjct: 187 PDIVVRFDARGRLLFANPALRRFVRSKRLPSGHVTGQPLGQQPAMLRELRERVQLA-MSS 245

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG---TIWMFENLTVQVDLET 427
            +  +  +    +      +   +P            P GG    + +  +++       
Sbjct: 246 GEVQRAELEERTRQGRRFFEWRIVPE---------PAPDGGDATVLCIGRDVSAMRRATE 296

Query: 428 KYNTLVKVQGETIDHLSEGV---AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            Y  L          L E +   A    D R    NPAF  +     + +  G   R++ 
Sbjct: 297 DYRALFNGMLSAF-ALHEIICDGAGVPVDYRFLAVNPAFERMTGLLASEM-VGRTARDVL 354

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                 + +  G      +  +F+   + L    ++ +    E     + +  T      
Sbjct: 355 PGLESEWLQRYGQVALTGVPVTFEAFNRDLGKYFKVSAYRPAERQFACMFHDVTDRVRGR 414

Query: 545 VTDSVRAERALTEKNEALRK 564
                 A R    +     K
Sbjct: 415 EERRSNARRMAALQRIFRMK 434


>gi|94313885|ref|YP_587094.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93357737|gb|ABF11825.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
          Length = 1122

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 157/371 (42%), Gaps = 18/371 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +      +    I+    G+ +    +  + + N     +         PG   R   A 
Sbjct: 382 RLQESEVLGRTIIESTGVGLVILDSTNAAVLMENDVSDRIT----AHAKPGELARFHRAA 437

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C+   +   G  +       F+ E      T+  L+  V+E +    P    +    +VT
Sbjct: 438 CNALADGERGNTV--GRHGKFNFELAHTDETVSYLTVRVVESTYQGKP--AKLCAMDDVT 493

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            + ++E  L +       A+  K++F+  +S+E+R+PL  ++G  +LL+   + +L++ Q
Sbjct: 494 AARQSESTLLQAIHDADAANRAKSAFLATMSHEIRTPLNGMLGSIELLE---VSALDAAQ 550

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +E +  S+  L+ ++ND+LD + ++AG M L      ++ L+ +V +  A      +
Sbjct: 551 RDQLEVMQQSAQSLIQIINDVLDFSKIEAGQMALQARPCQIDSLVEDVCRRFAPDAERRS 610

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFS 722
           +++  + D  L    + D  +  Q+   ++SNA+ F+ +G  V+       G        
Sbjct: 611 LQLLCVIDPALHAPILLDPLKTEQVLGNLVSNAIKFTEQGKVVVEATTMTEGGRDWLKLR 670

Query: 723 VKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +  + +F  FV    +   +  G GLGLSI    + L  G + + S    
Sbjct: 671 VIDTGIGIAIEDQQRLFAPFVQAEQSDSRRFGGTGLGLSICNRLVGLMNGSIRLVSEPGL 730

Query: 781 VTTINCRIPSK 791
            +  + RIP +
Sbjct: 731 GSCFDVRIPME 741


>gi|218887570|ref|YP_002436891.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758524|gb|ACL09423.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1071

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/601 (15%), Positives = 203/601 (33%), Gaps = 49/601 (8%)

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
            N +         +    A     +L    +     +++ + +      + + H      
Sbjct: 289 RNHALLLLGGAMAVTLAVAWSIGGRLVARPLSHIAATATRIGEGQLGARTGIRHD----- 343

Query: 278 KIVRVLNSFGEAGIAIDVSKE-------------ITVNDQLTHTYEILHNLTVAIAIFDQ 324
                +   G+   ++D                   + D       +  N   AI + D 
Sbjct: 344 -----MGEIGQLAFSVDTMAAILASRQGEREAFTAELRDNEARYRAVFDNAMDAILLADA 398

Query: 325 NRYLQF-HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
           +  +    NR+  +++E     L          +             + T +E    +  
Sbjct: 399 DTGIILDANRAAQQIFEYTRDELLGMHQRQLHPDRTHRNGF---GGRFNTLREQPLEIPA 455

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                  T    +      ++    R   + M  ++T +   E +   +       ++  
Sbjct: 456 EMPMRTRTGIERDMLVKAKVLRVGSREVAVAMLHDITERRQSEQQLREVEARFRSIVEGA 515

Query: 444 SEGVAVFGPDG----RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
             G+ +   D     RI+  NP   +        +        +    +     ++   +
Sbjct: 516 PLGLLLLTLDQAEHLRIEAVNPTADTALHITGRGMLGRRVTEALPGIAA-----TNLPTI 570

Query: 500 FAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           F  I     +   +   +   L      ++  +    N Q  + F +VT   RAE  L +
Sbjct: 571 FVGIARKGGEFSVTAHASAGWLPAGWAFVDLWVFRTGNRQIAVMFADVTRRTRAEDELRQ 630

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             +   KA+  K+ F+  +S+E+R+P+  I+G   LL+ S    L+ +Q   V+    +S
Sbjct: 631 TRDTAEKANRSKSEFIAVMSHEVRTPINGIMGMLQLLRGSH---LSGEQEDCVDTALGAS 687

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL +++DILD++ ++AG + L      +  +   V   +  +     +  ++     L
Sbjct: 688 RNLLRILDDILDISRMEAGALPLVEEPFTVAQVTEPVHAMLTPQAKAKGLTFEMQVAPDL 747

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSI 730
                 D  R+ Q+   ++SNA+  +  G   +                  +V + G   
Sbjct: 748 PPELAGDAGRIRQVLVNLVSNAVKCTDTGGVRVEMYPLPRCGQAGRTCIHMAVIDTGIGF 807

Query: 731 PEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +  +++F  + + +    R  G GLGL IV   + L GG + ++++    T  +  +P
Sbjct: 808 APERLRTLFENYATGSAATARPGGTGLGLGIVRRLVLLMGGTICVATTPGEGTEFHITLP 867

Query: 790 S 790
            
Sbjct: 868 L 868


>gi|166712335|ref|ZP_02243542.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1131

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 118/687 (17%), Positives = 236/687 (34%), Gaps = 83/687 (12%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E  +     ++L+ + +  + L ++L  +++  D  G   + N  + + T  +    + A
Sbjct: 296 EAMQRAKAQQQLAGNEARLRRLANTLPQIIFIADPDGRPHYFNQRWYEYTGLDPSNNEDA 355

Query: 237 IGESRKLFKE---EIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFG---- 287
                          +   ++ S       E       G ++ +  + + V    G    
Sbjct: 356 AWHRAHTADGLRLSAQAWTLALSGKRAFEMECELLRHDGQSRWHLARALPVRGDDGNISE 415

Query: 288 EAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE--I 341
             G   D+        QL         +   +   I + D      + N  + +      
Sbjct: 416 WIGTYTDIHDRRAFEQQLRESEVRFRALCETVPAMIWMSDAQGDCVYWNPRWYDFTGQGE 475

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL------- 394
           D A    +       +  R      + LN +      + V +    ++  W +       
Sbjct: 476 DQAMDQGSWDVMHPDDVARVRYAFEQALNQRGEFLAEYRVRRHDGHYR--WCIDTASPHF 533

Query: 395 -PNGQTL-------------HVIVTSNPRGGTIWMFEN------------LTVQVDLETK 428
             +G+ L             H+   +      + +               L+V+   E  
Sbjct: 534 ASDGRFLGHIGSLTDISERKHIEDATASDRAILGLITTGAPLPVVLDAIALSVEARGEIP 593

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR------- 481
               V V+ E    LS G A   P   I+       S    +    +   H+        
Sbjct: 594 LYCSVMVRDEVRHTLSFGSAAHFP---IEYRGHFAPSPIGEDGPPCALSAHLGVQVICAD 650

Query: 482 -NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
               A+ + ++  S    + A  +T        + GTL +  D       +P    Q M 
Sbjct: 651 IRADASFANHHAISAAMGIAACCVTPILASNGQVLGTLNIYYDRP----HLPTLREQAMA 706

Query: 541 TFVNVTDSVRAER------------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              +    +  ER            A T        A  +K+ F+  +S+ELR+PL  I+
Sbjct: 707 RSASHLAGIVIERTRVDAKLKLSLQAETAARAQAEHASRVKDEFLATLSHELRTPLNAIL 766

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++ L+++      +    + +  I  S+     +++D+LD++ + +G ++L      + 
Sbjct: 767 GWSQLMQSEMTEPTH--LGRGLVIIERSARAQTQIIDDLLDMSVILSGKIRLQAERFDIA 824

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L+    + +        I +++ +       F  D  RL Q+ + +LSNA+ F+  G T
Sbjct: 825 GLVRSTLELMQPTALAREIALELDAPCDGELWFFGDAGRLQQVLTNLLSNALKFTPAGGT 884

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           V +    ++      V++ G  I  D    VF+RF        RR  G+GLGLSI    +
Sbjct: 885 VRVAMDIEDERLRLCVQDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLV 944

Query: 766 NLHGGHVSISSS-DEGVTTINCRIPSK 791
           +LHGG +  SS+ +         +P +
Sbjct: 945 DLHGGILDASSAGEGQGALFTIVLPFR 971



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 73/247 (29%), Gaps = 21/247 (8%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSY----KIVRVLNSFGEAGIAIDVSKEITV 301
             ++  +             +   +           ++VR++ +     +      +  +
Sbjct: 249 SGLRASLAIPLHKHGRLVAAIGVHQRAPRHWLSTEIELVRLVAARCWEAMQR-AKAQQQL 307

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                    + + L   I I D +    + N+ + E   +D       PSN+E   + R+
Sbjct: 308 AGNEARLRRLANTLPQIIFIADPDGRPHYFNQRWYEYTGLD-------PSNNEDAAWHRA 360

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-------TIW 414
                 +L+ + W     S  ++ E   +     +GQ+   +  + P  G        I 
Sbjct: 361 HTADGLRLSAQAW-TLALSGKRAFEMECELLRH-DGQSRWHLARALPVRGDDGNISEWIG 418

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            + ++  +   E +            + +   + +    G     NP +       E++ 
Sbjct: 419 TYTDIHDRRAFEQQLRESEVRFRALCETVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQA 478

Query: 475 SPGTHIR 481
                  
Sbjct: 479 MDQGSWD 485



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 98/307 (31%), Gaps = 37/307 (12%)

Query: 35  LTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE 94
           L+T I ++ L+  R   A +  +    L+    +L +   L      +  + D  D  P 
Sbjct: 280 LSTEIELVRLVAARCWEAMQRAKAQQQLAGNEARLRR---LANTLPQIIFIAD-PDGRPH 335

Query: 95  IIGQ-LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND--- 150
              Q  ++   +  ++ +  ++            +   + LR   Q++ L    +     
Sbjct: 336 YFNQRWYEYTGLDPSNNEDAAWHR----------AHTADGLRLSAQAWTLALSGKRAFEM 385

Query: 151 --CAIKIEGRVSGSCAF---LR-----ILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
               ++ +G+     A    +R     I    G Y+++ +     ++L      F+ L +
Sbjct: 386 ECELLRHDGQSRWHLARALPVRGDDGNISEWIGTYTDIHDRRAFEQQLRESEVRFRALCE 445

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR-MISSSALE 259
           ++  ++W  D  GD ++ N  +   T                   +  + R     +  +
Sbjct: 446 TVPAMIWMSDAQGDCVYWNPRWYDFTGQGEDQAMDQGSWDVMHPDDVARVRYAFEQALNQ 505

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQLTHTYEI 311
           +        +   +      +   +          G  G   D+S+   + D       I
Sbjct: 506 RGEFLAEYRVRRHDGHYRWCIDTASPHFASDGRFLGHIGSLTDISERKHIEDATASDRAI 565

Query: 312 LHNLTVA 318
           L  +T  
Sbjct: 566 LGLITTG 572


>gi|229189658|ref|ZP_04316673.1| hypothetical protein bcere0002_13360 [Bacillus cereus ATCC 10876]
 gi|228593922|gb|EEK51726.1| hypothetical protein bcere0002_13360 [Bacillus cereus ATCC 10876]
          Length = 591

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I    
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIE--- 298

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R    S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 299 LRKKLPSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V    ++  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ELTVDFRNQIEEYAFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 1032

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 136/273 (49%), Gaps = 11/273 (4%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +  +E  +     ++     +N    ++ ERA +E  E    A+ +K+ F+ ++S+E+R+
Sbjct: 355 ERQVEEGVAQANKSRMETENLNRDLRLQTERA-SEMAEKAILAERLKSEFLANMSHEIRT 413

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  +IG T LL+ ++   LN  Q +YVE +  S+  LL L+NDILDL+ ++AG M +  
Sbjct: 414 PMNGVIGMTHLLQDTE---LNETQQEYVETMLNSTESLLVLINDILDLSKIEAGKMTIEQ 470

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
             + + DL  +V    A+      + +  +       +FV D  RL Q+ + +LSNA+ F
Sbjct: 471 MDVDVMDLQAQVSSLFASNAQAKGVELVSVYPLDCYKTFVTDPYRLKQVLANLLSNAIKF 530

Query: 702 SSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + KG     + ++  R++G    F V + G  I  ++  ++F  F        RR  G G
Sbjct: 531 TEKGDVTLRIEIEEPREDGARIRFEVVDTGIGIAPEVVDTLFKSFSQADASTTRRFGGTG 590

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +   GG + + S     TT    +
Sbjct: 591 LGLAISQRLVQYLGGRLQVESELGVGTTFTFAL 623


>gi|172037147|ref|YP_001803648.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171698601|gb|ACB51582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 1499

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 122/672 (18%), Positives = 239/672 (35%), Gaps = 67/672 (9%)

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK------ 223
             L  +  EL     + +     ++      D+L      R     +++ +  +       
Sbjct: 695  ELQSVNEELYTVNAEHQSKIQELTQLNTDIDNL-----LRSTDIGVIFLDRQFNIRKFTP 749

Query: 224  KNTETEGIVFQKAIGESRKLFK----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
                   I           L        +   +   +  E+ + + V+          ++
Sbjct: 750  AAIRAVNIKPSDVGRPLTDLTNNLHCPNLINIVQQVARTEEPYEQEVAIAPSDEYVLMRV 809

Query: 280  VRVLNSF----GEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFH 331
               L       G     + V++   V   L  T  +L NL       + +FDQ       
Sbjct: 810  HPYLQDDKDSDGIVMTFVQVNELKQVQQHLKQTNLLLENLYEASPAGLCLFDQGLKFIRV 869

Query: 332  NRSFVELWEIDLAFLATNPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            N +   +  I +         D   +L E+L     L + ++      NI  V       
Sbjct: 870  NPALARINGISIEGHLGKTLYDIAPQLAEYL--EGILRQVIDTGEAICNI-EVRGKMPAT 926

Query: 389  KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             +           V   ++ RG    + E +T +V  E           E       G  
Sbjct: 927  SEIERCWIASYYPVDFLNDGRGVGAVVVE-ITQRVQAEEALRHSQARLQEAQRLAKVGNW 985

Query: 449  VFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
                +  + L        + L    +               C    +     + F  +I 
Sbjct: 986  ELKHEDNLTLETAQPDCSKELSDIYQFDPQQSCFSLEDILHCHPPADRKALENAFQLLI- 1044

Query: 506  SFDDERKSLQGTLELLSDSV----LEYSIIPLPNAQTML---TFVNVTDSVRAERALTEK 558
             FD    SL   L +    V    +   +I   + Q +    T +++T+  R E+ L  +
Sbjct: 1045 -FDGIPFSLDVELNVSEQEVHCLNVIGQVIRDKDGQILKFYGTVMDITERKRIEQELVRR 1103

Query: 559  NEALRKA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            N+AL +A          ++ K+ F+ ++S+E+R+P+ +I+  + LL+ +   +L+++Q +
Sbjct: 1104 NKALEEAIAVAQVADSANQAKSEFLANMSHEIRTPINSIMLVSQLLEGT---NLDTQQKK 1160

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             ++ ++ +S  LLNL+N IL L+ +++  ++L +    LN +  E+  +   +     I 
Sbjct: 1161 LLQTLNNNSNHLLNLINKILSLSKLESRTLELEHRPFHLNQMFQELSHTFTPQAQSKAIG 1220

Query: 669  IKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-------- 719
            +      ++    + D  RL Q+FS ++SNA+ F+  G  V + A   N           
Sbjct: 1221 LTFTIASEVPDVLMGDDFRLQQVFSNLISNAIKFTFSG-QVTVTATLPNDTVSQSSPVTL 1279

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
             F+V++ G  I      S+F  FV       R   G GLGL+I    +    G + + S 
Sbjct: 1280 YFTVQDTGIGIDPTKQDSLFQPFVQADTSTTRQFGGTGLGLTICRRIVQSMKGEIGLDSR 1339

Query: 778  DEGVTTINCRIP 789
                +T   +IP
Sbjct: 1340 VGKGSTFWVKIP 1351


>gi|152992352|ref|YP_001358073.1| hypothetical protein SUN_0758 [Sulfurovum sp. NBC37-1]
 gi|151424213|dbj|BAF71716.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 501

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 122/242 (50%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L + N   + A E K+ F+ ++S+E+R+P+T I+GF + L   +    + ++ +    
Sbjct: 110 KDLQQANIDAQIASETKSEFLANMSHEIRTPMTGILGFVEQLAKKEN---DPERLRQFNI 166

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LL+++NDILDL+ +++G M L      L+ L ++        +   NI +   
Sbjct: 167 ITKSGQTLLSIINDILDLSKIESGKMTLEPQPTDLHKLFDDTITLFDELIKSKNIDLHKE 226

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS--VKNNGSS 729
            D KL    + D+ R  Q+   +LSNA+ F+  G ++ L+A+ D+   I    V++ G  
Sbjct: 227 IDEKLPKCLIIDQLRFKQVILNLLSNAIKFTPSGGSISLQASYDHTTQILQCAVQDTGLG 286

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  + +F+ F        RR  G GLGL+I    +++  G + + S+    +     
Sbjct: 287 IGKEHLEKIFHAFAQEDTSTTRRYGGTGLGLTISSKLLHMMKGQIHVQSTLGEGSRFYLD 346

Query: 788 IP 789
           +P
Sbjct: 347 VP 348


>gi|126659304|ref|ZP_01730440.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619386|gb|EAZ90119.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 649

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 154/380 (40%), Gaps = 15/380 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT------EENRLS 475
           +       + + +        +  G+      G I  +NP    ++            L+
Sbjct: 124 RWQQRQALDQIQQTYDRFFKRIPLGLYRLNRAGEILEANPTLMKMFGYEKREELFNQNLA 183

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                 ++     +   + +  + F   I +   E   +      + D   E        
Sbjct: 184 NYHLEPDVYRQWQQQLGQVEAKEDFEGRIRNHQQEIIWVSHKAIAVKDKKGEIIGYEGAI 243

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A    +     + ++      +  E   + + +K+ F+  +S+ELR+PL  IIG+  LL+
Sbjct: 244 ADITASKQAELERIQLLHEARQAQEEAERLNHVKDEFLATLSHELRTPLNAIIGWMQLLR 303

Query: 596 TSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +   G+LN  Q +  +E I  ++ +   L+ D+LD++ +  G +KL    I +  ++   
Sbjct: 304 S---GTLNEDQFNTGLEVIERNANVQTQLIEDLLDVSRIICGTLKLEAQPINVISVILSS 360

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +++      NI I +    +      D++RL Q+F  +L NA+ F+    ++ ++   
Sbjct: 361 IDTVSPTAKAKNININLQLSSQTIEINGDKERLQQVFWNLLINAVKFTPIDGSITIEGGE 420

Query: 715 DNGDFIF-SVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGG 770
           +N    F  + + G  I  D+   +F+RF    H      + G+GLGL+IV   + +HGG
Sbjct: 421 ENNQMAFIRITDTGKGISGDVLPHIFDRFRQAEHKSSTRTQGGLGLGLAIVRHIVEMHGG 480

Query: 771 HVSISSSD-EGVTTINCRIP 789
            V   S   +  +T    +P
Sbjct: 481 SVMAESEGIDKGSTFTVELP 500


>gi|78062940|ref|YP_372848.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77970825|gb|ABB12204.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 530

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 156/378 (41%), Gaps = 12/378 (3%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T +   ET+ +   +      D +   V    PDG +   N       +    ++     
Sbjct: 8   TNRACPETEVDDTERRFRSFADAIPHIVWTARPDGSVDYVNRRIEKYTELGFAQVEGWNW 67

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  I         E   W+   A  T ++ E +  + +       +   S +   N   +
Sbjct: 68  MSTIHP--DDVQTEVAHWERAIASGTEYEIEMRIWRASDCTYRWHLERASPLKDANGNIV 125

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                VTD    ++AL        +A+  K+ F+  +S+ELRSPL  I+GF  L+ T   
Sbjct: 126 KWVGTVTDIDDRKQALAA----AERANRAKSDFLSSMSHELRSPLNAILGFAQLMATDSP 181

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               S+Q+  ++ I  +   LL L+ND+LDLA +DAG + ++  ++ L+D+L E    I 
Sbjct: 182 PPTPSQQAS-IDQILRAGWHLLELINDVLDLAKIDAGQVAISPESVSLDDVLRECDSMIV 240

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGD 718
           T+  +  IR+            ADR R+ Q+   +LSNA+ ++     V +  +    G 
Sbjct: 241 TQAGQRGIRMTFPQGEAPCHVRADRTRVKQVLVNLLSNAVKYNCPSGAVDVTCSAPVPGR 300

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              SV + G  +  +    +F  F       G   G G+GL + +  + L GG + + S+
Sbjct: 301 VRVSVSDTGPGLSPEQVGRLFQPFNRLGQEAGPEEGTGIGLVVAKRLMELMGGGIGVDST 360

Query: 778 DEGVTTINCRI---PSKE 792
               +     +   P+ E
Sbjct: 361 PGKGSVFWIELDSAPAPE 378


>gi|121585528|ref|ZP_01675324.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121725847|ref|ZP_01679147.1| sensor protein TorS [Vibrio cholerae V52]
 gi|147672464|ref|YP_001215487.1| sensor protein TorS [Vibrio cholerae O395]
 gi|153818582|ref|ZP_01971249.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|262168553|ref|ZP_06036249.1| sensor protein TorS [Vibrio cholerae RC27]
 gi|121550145|gb|EAX60159.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121631612|gb|EAX63980.1| sensor protein TorS [Vibrio cholerae V52]
 gi|126510865|gb|EAZ73459.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|146314847|gb|ABQ19387.1| sensor protein TorS [Vibrio cholerae O395]
 gi|262023082|gb|EEY41787.1| sensor protein TorS [Vibrio cholerae RC27]
          Length = 984

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 127/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L++
Sbjct: 494 LLQDT---TLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVS 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRI 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFWFTLPL 691


>gi|289663864|ref|ZP_06485445.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 769

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 114/252 (45%), Gaps = 10/252 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                 E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  
Sbjct: 88  QRHGELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLD 144

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +       
Sbjct: 145 QRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGR 204

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFI 720
            +R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      
Sbjct: 205 QLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLR 264

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S  
Sbjct: 265 FQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEP 324

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 325 GRGSTFWFEIPL 336


>gi|53711829|ref|YP_097821.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52214694|dbj|BAD47287.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 411

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 180/400 (45%), Gaps = 34/400 (8%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           +++  ++VQ +   ++    K     +  ++    +   D  +  +N  +  L    E  
Sbjct: 23  YLWRKISVQKN---EWVAQTKESDTILRSMNACFILINSDLVVIRTN--YYDLSGILEEP 77

Query: 474 LSPGTHIRNIAATCSRY-------YNESDGWDLFAAIITSFDDER--KSLQGTLELLSDS 524
            S G     +    +         +   +   +   I  +F  ++    L+ ++ LLS  
Sbjct: 78  ASSGRVGDLLNCKNAVRSGGGCGAHKNCENCMIRHTIENAFCHKKGFHKLEASMRLLSSD 137

Query: 525 VLEYSIIPLP------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                IIP              + Q +LT  ++T+    +R L  + E    A+++K++F
Sbjct: 138 --HQQIIPCDVSVSGTYLNNEGHEQMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAF 195

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+GF+ LL +      ++++  Y++ ++ ++  LL +V D+LDL+ 
Sbjct: 196 IANMSHEIRTPLNAIVGFSGLLAS---ADDDTEKKMYLDIVAENNDRLLQIVTDVLDLSK 252

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIF 691
           +++G +  +YS   +NDLL  +   +  ++ +   I++   +        +++ R++QI 
Sbjct: 253 IESGSLDFHYSEFDVNDLLCGLHGILNIRLKDKPEIKLNCEAGTDEWIIYSEQHRIVQII 312

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + ++ NAM F+  G        +   +  F V + G  IP      +F+RF    H  + 
Sbjct: 313 TNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EV 370

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL++ ++ +   GG + + S     +T    +P K
Sbjct: 371 PGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLPLK 410


>gi|326800542|ref|YP_004318361.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
 gi|326551306|gb|ADZ79691.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
          Length = 850

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 168/375 (44%), Gaps = 22/375 (5%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              ++  E I+ L + +A    D  IKL +   R++ +T+  +       R +  T +  
Sbjct: 214 QSRRIVKEGIEELIDTIATSKQDSAIKLIDSVLRTIEETQRAQSDSFID-REVELTYAGN 272

Query: 491 YNESDGWDLFAAI----ITSFDDE----RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
              S    +  A+    +   ++E    R  +  +L  ++  VL +  + +     +L  
Sbjct: 273 LLISKMLSILNAVEKEGMLQMENENMGARTVMNHSLSRINFVVLSFLGVTI--ILVLLIL 330

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++  S R  R L    E        K  F+ ++S+ELR+PL +IIG+ + L+       
Sbjct: 331 SDIRKSNRYRRELEIAKEEAEYHSAAKQRFLSNMSHELRTPLQSIIGYAEQLRDEH---- 386

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             + S+ V  I  SS  LL +VN++LD   +++G    N     L+ L+ EV  ++  + 
Sbjct: 387 -PEDSRKVNVIYQSSEHLLQIVNEVLDYNRINSGKFHFNNQDFYLSQLIEEVVAAMQLQA 445

Query: 663 HENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD 718
            E ++ + +  + +  G    D  R+ QI   +LSNA+ F+ +GS    V      +  +
Sbjct: 446 EEKSLSLNLSKEIEGTGYLFGDPFRIKQILYNLLSNAIKFTDQGSVTLMVSTAVKNELTE 505

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +V++ G  IPE     +FN F     ++ G   G GLGLSIV++     GG++ I S
Sbjct: 506 LRITVEDTGKGIPESDIHRIFNEFEQAENSNSGTHFGSGLGLSIVKTLCEAMGGNIRIKS 565

Query: 777 SDEGVTTINCRIPSK 791
                +T +  IP K
Sbjct: 566 QLGKGSTFDVFIPLK 580


>gi|224476782|ref|YP_002634388.1| putative alkaline phosphatase synthesis sensor protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421389|emb|CAL28203.1| putative alkaline phosphatase synthesis sensor protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 569

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 159/371 (42%), Gaps = 26/371 (7%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             L+  +N           T++++   V +    G+I ++N A+  ++  E         
Sbjct: 212 RRLQKMHNEQKIQSNRLKTTLENIPSSVLMIDKYGKIVVANTAYYDMFNPE--------- 262

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                +  ++ YN      L   II +F  E K++   +E+  ++V E       +   +
Sbjct: 263 ----TSVVNKNYNRVIQGKLNTLIINAFKTE-KTINEQVEIYINNVHE----KYFDTACV 313

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                    ++    +     +L+K + ++  FV +VS+EL++P+T+I GF + L     
Sbjct: 314 PILSRNKKRLQGMVVVLHDITSLKKLENLRREFVANVSHELKTPITSIKGFAETLIDGAK 373

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              NS   +++  I   S  + +LV D+LDL+ ++    ++    + L+++      ++ 
Sbjct: 374 NDENS-LDEFLNIILKESNRIESLVEDLLDLSHIEQ-QTEIRTERVDLSEVTQTTVNTLY 431

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                  I I       +    A+  ++ Q+ + ++SNA+++SS  STV ++  + +   
Sbjct: 432 AYAQRKAIEIDAEIQNHV-MIDAEASKIAQVVTNLVSNAINYSSDESTVYVRVYQKDDKR 490

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I  V+++G  I  +  K VF RF            G GLGLSI +  +  + G + I S 
Sbjct: 491 ILEVEDHGIGIAPEEQKHVFERFYRVDKARSRDSGGTGLGLSITKHIVEAYQGRIQIESE 550

Query: 778 DEGVTTINCRI 788
            +  TT     
Sbjct: 551 PDVGTTFRIIF 561


>gi|166030935|ref|ZP_02233764.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC
           27755]
 gi|166029202|gb|EDR47959.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC
           27755]
          Length = 995

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 181/390 (46%), Gaps = 25/390 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEG---VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +   E +     + +   I+ L      +++            + R++   ++  +    
Sbjct: 320 RNRTEKRSILQDQKRLRVINALGHAYSSISLVNIKTEKIEIVKSSRNMKPDQKGDILSKV 379

Query: 479 HIRN-IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           H+   I    +  + E     +  + +T   +ER++L  T + +    L   I+P    +
Sbjct: 380 HLEELIQQVITEPFQEKYREFINMSTVTQRLEERETLSFTAQTVEGRWLTIIIVPQGYDK 439

Query: 538 T------MLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           T      ++   +VT+    E    + L     A   A+  K +F+ ++S+++R+P+  I
Sbjct: 440 TGKLSTVLVANRDVTEEKEREIERDKNLRNALAAAEHANRAKTAFLNNMSHDIRTPMNAI 499

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGFT  L T+ +G+       Y++ I  SS  LL+L+ND+LD++ +++G +++ Y+T+ L
Sbjct: 500 IGFT-ALATTHIGN-TELVLDYLKKIHTSSQHLLSLINDVLDMSRIESGSVRIEYTTVHL 557

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
            D+L++++  I   +H     + + +   +    + D+ RL Q+   I SNA+ F+  G 
Sbjct: 558 PDILHDLRTIIQGSVHSKQQDLYIDTQDVIHEDIITDKLRLTQVLLNICSNAVKFTPVGG 617

Query: 707 TVILKAA----RDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
            + ++ +    R +G    +FSVK+NG  +  +  K VF+ F       +    G GLG+
Sbjct: 618 MINIRVSEKPCRRDGYITVVFSVKDNGIGMSREFRKHVFDSFSREHTVTENGIGGTGLGM 677

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I ++ +++ GG + + S     T     +
Sbjct: 678 AITKNIVDMMGGTIQVESETGKGTEFTIML 707


>gi|83646964|ref|YP_435399.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635007|gb|ABC30974.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 792

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 154/322 (47%), Gaps = 15/322 (4%)

Query: 479 HIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNA 536
           HI    A+ S +    S   D  A      +DE   L  +L  +LS+   + +I+ L   
Sbjct: 191 HITQPLASLSEWAMQVSKHKDFNARASKRNEDEIGHLVDSLNVMLSELARQETIVSL--- 247

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                   + +    E+ L        +A++ K+ F+ ++S+ELR+PL  IIG++++L+ 
Sbjct: 248 -NRELEWEIQERKVVEKDLIATRNRAEEANKAKSRFLANMSHELRTPLNAIIGYSEMLQE 306

Query: 597 --SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++      +    +  + ++   LL+L+NDILD++ ++AG M+++     + DL++EV
Sbjct: 307 VVAEDDYEREEILDDIGKVRSAGKHLLSLINDILDISKIEAGKMQISIEAFSMEDLVDEV 366

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             ++     E   ++ V   G +G   +D  ++ QI   +LSNA+ F+  G  V L   R
Sbjct: 367 AGALRLLADERRNKLVVRGAGDVGVVHSDLVKVRQILFNLLSNAVKFTEDG-VVELICER 425

Query: 715 D----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           +        +  V++ G  I +   K +F  F        RR  G GLGL+I  S+  + 
Sbjct: 426 ESVAGEDWMLCKVRDTGIGISDRAIKELFRPFSQADPSTTRRYGGTGLGLAISRSYATML 485

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG +++SS +   +    R+P+
Sbjct: 486 GGEITVSSKEGEGSEFCIRLPT 507


>gi|160882174|ref|ZP_02063177.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
 gi|260175224|ref|ZP_05761636.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156112429|gb|EDO14174.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
          Length = 422

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSPG 477
           +V  +      +K     + +++    +   D  +  +N                R+   
Sbjct: 29  EVHSKENKENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPIQVGGVTKRVGDL 88

Query: 478 THIRN-IAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLP 534
            H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   + +   + 
Sbjct: 89  LHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTPCDVS 148

Query: 535 NAQT----------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            + T          +LT  +VT+   A+R L+ + E    AD++K++F+ ++S+E+R+PL
Sbjct: 149 VSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPL 208

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ L+      S   ++  Y + I+ ++  LL LVNDI DL+ +++G +   Y+ 
Sbjct: 209 NAIVGFSGLM---VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTE 265

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              NDLL E++    TK++ +++ +   +  +     ++R+R++Q+ S +L NAM F+  
Sbjct: 266 FDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTES 325

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G   +  + +   +  F V + G  IP++  K +F+RF+      + +G GLGL++ ++ 
Sbjct: 326 GEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD--REMQGTGLGLTLSQTI 383

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I   GG++ + S     +T +  +P
Sbjct: 384 IQNLGGNLELDSEINRGSTFSFVLP 408


>gi|30261573|ref|NP_843950.1| sensor histidine kinase ResE [Bacillus anthracis str. Ames]
 gi|47777938|ref|YP_018121.2| sensor histidine kinase ResE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184404|ref|YP_027656.1| sensor histidine kinase ResE [Bacillus anthracis str. Sterne]
 gi|165872663|ref|ZP_02217293.1| sensor histidine kinase ResE [Bacillus anthracis str. A0488]
 gi|167634330|ref|ZP_02392651.1| sensor histidine kinase ResE [Bacillus anthracis str. A0442]
 gi|167641635|ref|ZP_02399881.1| sensor histidine kinase ResE [Bacillus anthracis str. A0193]
 gi|170689250|ref|ZP_02880446.1| sensor histidine kinase ResE [Bacillus anthracis str. A0465]
 gi|170706277|ref|ZP_02896738.1| sensor histidine kinase ResE [Bacillus anthracis str. A0389]
 gi|177651395|ref|ZP_02934184.1| sensor histidine kinase ResE [Bacillus anthracis str. A0174]
 gi|190568132|ref|ZP_03021042.1| sensor histidine kinase ResE [Bacillus anthracis Tsiankovskii-I]
 gi|227815676|ref|YP_002815685.1| sensor histidine kinase ResE [Bacillus anthracis str. CDC 684]
 gi|229601315|ref|YP_002865983.1| sensor histidine kinase ResE [Bacillus anthracis str. A0248]
 gi|254682359|ref|ZP_05146220.1| sensor histidine kinase ResE [Bacillus anthracis str. CNEVA-9066]
 gi|254733774|ref|ZP_05191488.1| sensor histidine kinase ResE [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740535|ref|ZP_05198226.1| sensor histidine kinase ResE [Bacillus anthracis str. Kruger B]
 gi|254753924|ref|ZP_05205959.1| sensor histidine kinase ResE [Bacillus anthracis str. Vollum]
 gi|254759020|ref|ZP_05211047.1| sensor histidine kinase ResE [Bacillus anthracis str. Australia 94]
 gi|30255427|gb|AAP25436.1| sensor histidine kinase ResE [Bacillus anthracis str. Ames]
 gi|47551643|gb|AAT30596.2| sensor histidine kinase ResE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178331|gb|AAT53707.1| sensor histidine kinase ResE [Bacillus anthracis str. Sterne]
 gi|164711607|gb|EDR17154.1| sensor histidine kinase ResE [Bacillus anthracis str. A0488]
 gi|167510428|gb|EDR85828.1| sensor histidine kinase ResE [Bacillus anthracis str. A0193]
 gi|167530218|gb|EDR92944.1| sensor histidine kinase ResE [Bacillus anthracis str. A0442]
 gi|170128811|gb|EDS97677.1| sensor histidine kinase ResE [Bacillus anthracis str. A0389]
 gi|170666805|gb|EDT17572.1| sensor histidine kinase ResE [Bacillus anthracis str. A0465]
 gi|172082673|gb|EDT67736.1| sensor histidine kinase ResE [Bacillus anthracis str. A0174]
 gi|190560866|gb|EDV14841.1| sensor histidine kinase ResE [Bacillus anthracis Tsiankovskii-I]
 gi|227002441|gb|ACP12184.1| sensor histidine kinase ResE [Bacillus anthracis str. CDC 684]
 gi|229265723|gb|ACQ47360.1| sensor histidine kinase ResE [Bacillus anthracis str. A0248]
          Length = 591

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ +   L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVGINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  HGG +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHGGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|222150272|ref|YP_002559425.1| two-component sensor histidine kinase [Macrococcus caseolyticus
           JCSC5402]
 gi|222119394|dbj|BAH16729.1| two-component sensor histidine kinase [Macrococcus caseolyticus
           JCSC5402]
          Length = 612

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 160/399 (40%), Gaps = 30/399 (7%)

Query: 399 TLHVIVTSNPRGGTI-WMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V V  N   G +   F NL+ +V + +    +  +     I H+S+GV      GR+
Sbjct: 229 TNRVKVYGNDEIGELALTFNNLSKRVQEAQANTESEKRRLDSVITHMSDGVIATDRRGRV 288

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    ++ +  G H+ +I A  + Y  +         II   + ER  ++ 
Sbjct: 289 RIVNEMALKMLDMNKDDVE-GRHVLDILAIEAHYSLDELQDIAGGIIIDINEKERLIVRA 347

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +   +           + +   +  ++ V         L +  E     +E +  FV +V
Sbjct: 348 SFSTI-----------IQDTGFITGYIAV---------LHDVTEQHHVENE-RREFVANV 386

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+       N    Q++      +  ++ LVND+L L+ +D  
Sbjct: 387 SHELRTPLTSMRSYIEALEEGAWKDEN-LAPQFLSVTREETDRMIRLVNDLLQLSKMDNT 445

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
              LN   I  N  ++++           N                D  ++ Q+F  +++
Sbjct: 446 DDNLNKELIDFNMFIHKIINRFEMS-EGKNATFIRDIPKNGIFVEIDPDKMTQVFDNVIT 504

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NA+ +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 505 NALKYSKGRKKVEFHVKQNTLFNRMTIQIKDNGIGIPLNKVDKIFDRFFRVDKARTRKMG 564

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  I  H G +  +S +   T++   +P +
Sbjct: 565 GTGLGLAISKEIIEAHNGRIWANSKEGYGTSVYITLPCE 603


>gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 1079

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 12/291 (4%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +    DE   L   L  +  +  +     + N   ML       +  AE           
Sbjct: 344 VRHRRDEIGRLADALRRMIIAQRQSRQKLVENNLEMLAANEKLQAKTAEAE--HLAVEAT 401

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A+  K  F+  +S+E+R+P+  IIG T+L   S +  +   Q +Y+E + +S+  LL L
Sbjct: 402 AANRAKRDFLAVMSHEIRTPMNGIIGMTELALNSGVTPI---QQEYLEMVRSSAETLLEL 458

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILD + ++AG ++L +    L DLL +  Q++  + H + + + +     +  +   
Sbjct: 459 LNDILDFSKIEAGRLELEHIDFDLRDLLGDTMQALGVRAHAHGLELALQIRPDVPDALTG 518

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+   ++ NA+ F+ +G   +L     +GD      F V++ G  IP +    +
Sbjct: 519 DPHRLRQVVVNLVGNALKFTERGEVTVLVENDPSGDEKVRLRFVVRDTGIGIPPEAQARI 578

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           FN F        RR  G GLGL+I    + + GG +++ S     +T    
Sbjct: 579 FNAFSQADSSTTRRFGGSGLGLAITSQLVGMMGGQINVESQVGQGSTFTFT 629


>gi|192360747|ref|YP_001981263.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686912|gb|ACE84590.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 758

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 3/249 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +  D   A+  L         A + K+ F+  +S+ELR+PL  IIG+T+L+        +
Sbjct: 377 HSKDLQIAKDRLAIAKRKAEDASQAKSEFLSLMSHELRTPLQAIIGYTELVIEELKLDSD 436

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  + +E +  +   LL L+N +LD+A +++G M L+ + + L+ L++E + ++A  + 
Sbjct: 437 DRHVKDLERVIHNGERLLRLINGVLDMAKIESGSMDLDLTEVRLSSLVDEARGTVAPLLE 496

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           ++ I++    D       AD ++LL I   +L NA  F+ KG  V +KA         SV
Sbjct: 497 KSEIQVVQEVDDGESLPKADPEKLLHILINLLGNASKFAPKG-VVSIKAYHRAEKIYISV 555

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  +  +  + +F+ F         + +G GLGLSI      L GG + + S     
Sbjct: 556 ADTGIGMSPEQQQHIFDPFRQADSGTTRKYQGSGLGLSITRQLCELMGGSIRVESELGKG 615

Query: 782 TTINCRIPS 790
           +T    +P 
Sbjct: 616 STFIVELPL 624


>gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 742

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 132/268 (49%), Gaps = 16/268 (5%)

Query: 535 NAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +A  +    +  D +  ER     AL    +A   A   K+ F+ ++S+E+R+PL  ++G
Sbjct: 338 DAGELGLLASALDRMAQERQVAVDALRAAKDAAEDASRSKSEFLANMSHEIRTPLNGVLG 397

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL++   G  +++Q +YVE    S+  L  L++DILDL+ +++  + +   +  + D
Sbjct: 398 MLQLLES---GRPSAEQREYVETAIRSTNRLTRLLSDILDLSRIESNKLVIQEESFAVAD 454

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST- 707
           +   +     T   E  +R++V  D ++      D  RL QI   ++ NA+ F+ KG   
Sbjct: 455 VRQSILDIFETPAREKGVRLEVRVDPRIPAHLFGDEARLRQILFNLVGNAVKFTPKGQVA 514

Query: 708 ---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
              V++ AA ++     F+V+++G  IP +  K +F  F+          +G GLGL+IV
Sbjct: 515 VNFVLVSAAGESTCQIRFTVQDSGVGIPSERLKDIFEPFIQVDGSCVRSHQGAGLGLAIV 574

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++L  G + I S+    T +   +P
Sbjct: 575 RRLVDLMHGQLQIQSTQGEGTLVGVTLP 602


>gi|30019626|ref|NP_831257.1| sensor protein resE [Bacillus cereus ATCC 14579]
 gi|229126891|ref|ZP_04255903.1| hypothetical protein bcere0015_13480 [Bacillus cereus BDRD-Cer4]
 gi|229144176|ref|ZP_04272590.1| hypothetical protein bcere0012_13390 [Bacillus cereus BDRD-ST24]
 gi|29895170|gb|AAP08458.1| Sensor protein resE [Bacillus cereus ATCC 14579]
 gi|228639184|gb|EEK95600.1| hypothetical protein bcere0012_13390 [Bacillus cereus BDRD-ST24]
 gi|228656831|gb|EEL12657.1| hypothetical protein bcere0015_13480 [Bacillus cereus BDRD-Cer4]
          Length = 591

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V   G +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKGPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|83309766|ref|YP_420030.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944607|dbj|BAE49471.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 586

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 105/451 (23%), Positives = 193/451 (42%), Gaps = 40/451 (8%)

Query: 352 NDELLEFLRSANKLPEQLNWKTWKEN--IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            DE    LR+  K  E    +  +    + +  ++    ++ + L             P 
Sbjct: 165 RDETPARLRARVKALEIAQREAQRTQRVLLATTRALRESEERYALA---------MRGPN 215

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLSNPAFRSLWK 468
            G +W +  +T ++ L  +  +++  + +T+   S E + +  P+ R +      R L  
Sbjct: 216 EG-LWDWNPITKELYLSARLLSILGFESDTLRTTSHEWLELVHPEDRDRYQATLVRHLKG 274

Query: 469 ---TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLSD 523
                E                +R     D   +   ++ S  D  ER + Q  L+  ++
Sbjct: 275 EDAHFECEYRVTDRDGRWRWVLARGLAVLDADGVATRMVGSIGDVTERHAYQRALQEANE 334

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             LE  ++                     R L        +A+  K+ F+ ++S+ELR+P
Sbjct: 335 Q-LEQRVV------------------ERTRELDLARCQAEEANRCKSEFLANMSHELRTP 375

Query: 584 LTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           L  IIGF+D++++   G + N++  +Y+ +I  S   LL ++NDILDLA V+ G   L+ 
Sbjct: 376 LNAIIGFSDVMRSGVFGPVGNARYGEYIGWIWDSGHHLLRIINDILDLAKVEVGRFDLSR 435

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            +  +  LL    + ++ +     + +   ++  LG  + D  R+ Q+   +LSNA+ F+
Sbjct: 436 ESTPVLPLLESAIRLVSERATRAEVNVGCKAEPGLGDAMLDPLRMKQVLLNLLSNAVKFT 495

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
             G +V L+A  +  D +  V + G  + E+  +     FV       RR  G GLGL +
Sbjct: 496 PAGGSVSLEARHEGTDLVLIVADTGIGMDEESLEKALQPFVQVESSLSRRYAGTGLGLPL 555

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +SF  LHGG + + S     TT+  RIP K
Sbjct: 556 AKSFSELHGGSLDLVSRPGEGTTVTVRIPRK 586


>gi|262381423|ref|ZP_06074561.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296600|gb|EEY84530.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 533

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 227/525 (43%), Gaps = 56/525 (10%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIF------DQNRYLQFHNRSFVELWEIDLAFL 346
           ++ ++  T+         +L N+  ++ I+        N    + +    +L+      +
Sbjct: 34  VNTTENKTLEQDYRDLAGLLSNIVDSLPIYFFVKDTGDNFRYVYSSPLMNQLYGRYHNDV 93

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNG--QTLHV 402
                 D  L+           +  +++++    V K+ +  +    +  P G  +T+  
Sbjct: 94  VGKTDFDLFLD----------PVVAQSFRDMDEEVVKTGKMQRFVEQMIDPKGILRTMDT 143

Query: 403 IVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           +    PR       + +  ++T Q  +E + ++  K            +A+    G+I  
Sbjct: 144 MKLLAPREDKPPYLVGISWDITKQRQVEEELHSYNKR-----------LALACQAGKIYP 192

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAIITSF-DDERKSLQ 515
               +  +  T E  L     I+++  T + +      D   ++  I T+F   E  S++
Sbjct: 193 W--LWDLVNGTAELSLEENGQIKHVQITHASFTEKIHPDYRKVYENITTAFMRGEIDSMR 250

Query: 516 GTL--ELLSDSVLEYSII-----PLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKAD 566
            +      SD  +    I       P+ + + +   + D    +   A  +      ++D
Sbjct: 251 FSFPCRYFSDEYVWLEKIGEVYEADPDGKPIRSIGILRDMTVDKRHEADVQAKRLAEESD 310

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL  S        + +Y+  I +S+  LL L+ D
Sbjct: 311 RMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEE---KKEYLRIIESSNEFLLQLIGD 367

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ +++G M+  Y+T+ L+++    +Q+ A ++    +++   SDG     V+++ R
Sbjct: 368 ILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAP-GVKVIFESDGNDYCIVSEKTR 426

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+ +  LSNA+ F+S GS +       +      V + G  I ++   S+FNRFV   
Sbjct: 427 LTQVLTNFLSNAVKFTSSGS-IRFGYRLTDDGIYVYVTDTGMGISKESQASIFNRFVKLN 485

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 486 SF--KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 528


>gi|189467251|ref|ZP_03016036.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
 gi|189435515|gb|EDV04500.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
          Length = 536

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/513 (20%), Positives = 202/513 (39%), Gaps = 43/513 (8%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNP 350
           I V +   + +      E+L+NL +   + D   N    F N+   +L+ +    L    
Sbjct: 31  ISVKEWEEMKEDNFLMRELLNNLPIPTTVKDIKDNCNYLFWNKKSEDLYSVSQDDLIGK- 89

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNG---------QTL 400
                     +A+ LP ++    +++      +S +++      L +G         Q L
Sbjct: 90  ----------NASVLPPEI-CSAFQQTDRETIRSGQSNTFQHLILADGCEHVLSMYKQLL 138

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           +           I    ++T   +   +   L       +      +  +    +     
Sbjct: 139 YYKGEPRW---LISAAVDVTEATEKRCQLEQLDLQHRLLLKATGMKLWTWDLRRKEITWK 195

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              R      +  +    H+  I          +   D      T F DE   L+     
Sbjct: 196 ---RDNEGATDRVVDADEHLLLILPEYRENIYRA--LDRLNRKETDFFDEEFQLRNEDGT 250

Query: 521 LSDSVLEYSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           LS   +  ++            +   + +      E+ L E  E   +A+ +K++F+ ++
Sbjct: 251 LSWREIYGAVYQYDENGEPVVLVGGTLMIDKRKALEQDLREAKEKAEEANRLKSAFLANM 310

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL +I+GF+ +L  ++      ++ +Y + I  ++T+LL +V+D+L+L+ ++AG
Sbjct: 311 SHEIRTPLNSIVGFSSILTMTEDM---EEKKEYNQLIQHNNTLLLKVVDDVLELSKLEAG 367

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             KL  +   L+DL+ E       K     + ++V    +      D Q + +I S  LS
Sbjct: 368 DFKLYPAWFCLSDLVVESAAECRMKADGK-LDVRVDKPEQDYMVELDAQYVKRILSNFLS 426

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           NA+  +  G  + +  +  +G    SVK+ G  IP+D    VF+RF       Q  GVGL
Sbjct: 427 NALKNTQSGH-IDIAYSMVDGGVKISVKDTGCGIPQDKLPVVFDRFEKVDSFAQ--GVGL 483

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL I +S     GG + ++S     T     +P
Sbjct: 484 GLPICKSIAESMGGTIGVTSEVGAGTAFWVTLP 516


>gi|149194248|ref|ZP_01871345.1| histidine kinase [Caminibacter mediatlanticus TB-2]
 gi|149135423|gb|EDM23902.1| histidine kinase [Caminibacter mediatlanticus TB-2]
          Length = 1023

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 162/398 (40%), Gaps = 34/398 (8%)

Query: 416 FENLTVQVDLETKYNTLV-----KVQGETIDHLSEGVAVFGPD------GRIKLSNPAFR 464
           F N +    +E    T++           I++  +G A+   D       RI   N +  
Sbjct: 227 FFNNSEFKKIEKDIKTVIFYLQQANMQYYINNTFDGYAIDAYDYFNLFTKRINFFNNSVN 286

Query: 465 SLWKTEENRLS------PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            L       L+          I N             G      +I S  +E  +L  TL
Sbjct: 287 KLNNEVNTNLNLIVKNATNNLIINSIIFLLSILILILGM-YIVKLIKSHINELSNLLTTL 345

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             ++   ++  I              V DS++  +   +K+E   K    K+ F+ ++S+
Sbjct: 346 APITGKNIQIDIS--STKGINEAIKVVNDSIKIIQESIKKSEEATK---AKSLFLANMSH 400

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GF ++LKT+    L  +Q +YV+ IS S+  LL +VN+ILD++ +++  +
Sbjct: 401 EIRTPLNGILGFLEILKTT---DLTPEQEEYVDTISQSAKNLLQIVNNILDISKIESNKV 457

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
            +        D      +  AT     +I+        + S +  D  ++ +I + +++N
Sbjct: 458 TIEEIEFKALDEFESTLEIFATPASHKHIQYVTEISPNMPSILKGDILKIKEIITNLINN 517

Query: 698 AMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
           A+ F+ +   + +K              F V++ G  + E     +F  F         +
Sbjct: 518 AIKFTPENGIISVKILLQEIINNKAKIYFEVRDTGIGMSEAQKAKIFEAFTQADASVTRK 577

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+IV+S++ + G H+++ S     +     I
Sbjct: 578 YGGTGLGLTIVKSYLEMMGSHINVESEINKGSRFYFTI 615


>gi|89893099|ref|YP_516586.1| hypothetical protein DSY0353 [Desulfitobacterium hafniense Y51]
 gi|89332547|dbj|BAE82142.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 585

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  L + N  L++  + K  F+  VS+ELR+PLT II F ++L   K    +S++    E
Sbjct: 335 QIQLEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFEDSSEEQILCE 394

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               +S +LL+++N+ILDLA ++ G   L+  T+ L D++N V+  I      N+I +  
Sbjct: 395 I-KENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIHLTA 453

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSS 729
             +  +     D +++ +I   +  NA+ F+  G  V +    A D      +V+++G  
Sbjct: 454 RVERGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIG 513

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++    +F +F+       R+  G GLGL++ +    LHGG +S+ S     +T    
Sbjct: 514 ISKENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKGSTFIVL 573

Query: 788 IPSK 791
           +P +
Sbjct: 574 LPIE 577


>gi|167772720|ref|ZP_02444773.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM
           17241]
 gi|167665198|gb|EDS09328.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM
           17241]
          Length = 1108

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 163/417 (39%), Gaps = 25/417 (5%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI----DHLSEGVAVFGPD 453
           + +        +   +   +++    + + +     ++         D + E   +    
Sbjct: 407 KRIRFTYYEGDQTHILLTIQDVQEVREAKNRELVRNRIFATAFRDLYDQVFEADLITNEI 466

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA-TCSRYYNESDGWDLFAAIITSFDDERK 512
             I       + +   +  R        ++      R Y +    D     + S      
Sbjct: 467 HEIICDEDGIQRIPGGQTLREVIDYRWEHLIHPDFRRQYMQEMDMDTIPERLASSPSIYF 526

Query: 513 SLQGTLELLSDSVLEYSI-----IPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEAL 562
            ++      SD    YSI         ++  ++ ++   D  R E     RAL +     
Sbjct: 527 EVRRKTSFTSDEYHWYSIQIQFLSKSYDSYKIMLYMRDIDQTRREDERNKRALQDALVLA 586

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R A+  K+ F+  +S+++R+P+  IIG T  +  + LG+  +K S  ++ I  S+  LL+
Sbjct: 587 RDANRAKSDFISRMSHDIRTPMNAIIGMT-AIAAANLGN-EAKISDCLQKIGVSAKFLLS 644

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           L+NDILD++ +++G + +       + ++  +      +  + ++   V  +     +  
Sbjct: 645 LINDILDMSKIESGKVVIAQCEFNFHRMIQGISSVFGQQAAQKHLAFNVYLEENFPLTCT 704

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCK 736
            D  R+ QI   +LSNA+ F+ +G  V L+  R           F V + G  I  +  K
Sbjct: 705 GDELRINQILMNLLSNAIKFTPEGGRVSLRIERKKAKEHITLVRFEVADTGVGISPEFQK 764

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F+ F   +    R   G GLG++I ++ + L  G +S+ S     +     +P +
Sbjct: 765 RIFDPFEQESAGSGRVFEGTGLGMTITQNLVALMDGRISLESEPGKGSRFIVELPLE 821


>gi|307825601|ref|ZP_07655819.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
 gi|307733487|gb|EFO04346.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
          Length = 1640

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 10/241 (4%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
              L +       A ++K++F+ ++S+E+R+P+  I+G T L+    L  L +KQ  Y+  
Sbjct: 846  EELQDMTLQALAAVQVKSAFLANMSHEIRTPMNAIMGMTHLVL---LTDLTAKQRNYLYK 902

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I++S+  LL ++NDILD + ++AG +KL Y+   L  ++  +    ++ ++   + ++  
Sbjct: 903  INSSAKWLLGILNDILDFSKLEAGKLKLEYTEFRLETVMQYLDDVTSSLLNSKQLALRFE 962

Query: 673  SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAA-RDNGDFIFSVKNNG 727
             D  + +  + D  RL Q+   +LSNA+ F+ KGS    V L+A+        FSV + G
Sbjct: 963  VDPDVPTTLIGDPLRLGQVLLNLLSNAIKFTEKGSVTLQVQLQASDAKEACLCFSVIDTG 1022

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              + E+    +F  F        R   G GLGLSI +  +   GG ++I S     +T  
Sbjct: 1023 IGLNEEQQSHLFAAFNQADDSTTRKYGGTGLGLSISKELVEAMGGTINIESRLGFGSTFY 1082

Query: 786  C 786
             
Sbjct: 1083 F 1083


>gi|296502147|ref|YP_003663847.1| sensor protein ResE [Bacillus thuringiensis BMB171]
 gi|296323199|gb|ADH06127.1| sensor protein resE [Bacillus thuringiensis BMB171]
          Length = 580

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 238 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 290

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 291 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 342

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 343 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 391

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 392 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 451

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V   G +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 452 ALTVDFKGPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 511

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 512 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 565

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 566 GEGTTFSVYLPNR 578


>gi|262170598|ref|ZP_06038276.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
 gi|261891674|gb|EEY37660.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
          Length = 916

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 191 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATS 250

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 251 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 308

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 309 Q----LTNSQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 364

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 365 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 424

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 425 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 484

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 485 GEISLTSRLHQGSTFWFTL 503


>gi|254456888|ref|ZP_05070316.1| sensor protein GacS [Campylobacterales bacterium GD 1]
 gi|207085680|gb|EDZ62964.1| sensor protein GacS [Campylobacterales bacterium GD 1]
          Length = 761

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 6/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +      KA + K  F+ ++S+E+R+PL  I+GF +LL       ++ K   Y++ 
Sbjct: 141 QKLIDARLEADKASQAKEYFLSNMSHEIRTPLNAILGFVNLLIDE---DVSKKHRTYLDI 197

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+++NDILD + + +G   +      L+D ++   +      +  +I I   
Sbjct: 198 ILNSGENLLSIINDILDFSKLRSGEFTIEPKIFSLHDEISHTMELFVASANVKDITITSF 257

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D  +     AD  R+ QI S  LSNA+ F+  G  + ++AA  +G    SV ++G  I 
Sbjct: 258 IDPHIPKELYADALRIKQILSNFLSNAIKFTPNGGHISVEAACHHGILKLSVTDSGIGIA 317

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+  +++F  F    H  Q+   G GLGLSI         G V   S     +     +P
Sbjct: 318 EEDIENIFTAFAQAQHSQQKNCDGTGLGLSICHQLARHMNGSVHAKSIVGNGSEFWVEMP 377


>gi|219847057|ref|YP_002461490.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219541316|gb|ACL23054.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 763

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 105/531 (19%), Positives = 200/531 (37%), Gaps = 68/531 (12%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--------LAFLATNPSNDELLEFLR 360
            E++ +L   + I D    +   N+    L  I+        LA L  N      L+ + 
Sbjct: 237 QEVIASLPDGLIILDSRGLIVEINQHAPRLLGIEKERWIGRSLAHLVRNSPFGNDLQHIL 296

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
            AN  P   N         S+  +     +    P      +   +    G++ +  +++
Sbjct: 297 QAN--PSSANRP-------SILDNGTRAIEVRFRP------LQSATGIATGSLLLIRDVS 341

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++  E + +  +      I+ +    +         L N   R + +           I
Sbjct: 342 ERMRAEQERSRHIAALR-LINAI--ARSANTAQETNSLLNTIARIIVQEGHWERVSIGLI 398

Query: 481 RNIAA--TCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSDSVLEYS------ 529
                  T +  Y  S    L   +IT        ++  QG  EL+  S L+        
Sbjct: 399 DETKQHITVAVDYTVSGPGRLQGEVITGLPAAQLIKRIRQGRPELIQLSELDTDDPLAAG 458

Query: 530 ----------IIPLPNAQ--TMLTFVNVTDSVRAERAL-----------------TEKNE 560
                     + PL +    T +      +      AL                     E
Sbjct: 459 LHREGLQSLLVAPLRHDHQATGILGFAGHEPKTMTPALSELVTAIGELITDAIIRIRLYE 518

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            ++ AD +K +F+  VS+ELR+PLT+IIG+TD+L+   LG L+ +  + + Y+  +S  L
Sbjct: 519 QVQHADRLKTTFLATVSHELRTPLTSIIGYTDVLRRGILGELSPEVQETLGYMRQASLNL 578

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           +  +NDIL+ + ++AG + +    + +  ++  V   +  +  E ++ + V     +   
Sbjct: 579 MRQINDILEFSRIEAGQLSIEIEPVEVGAIIQNVVGQMLPQARERDLTVNVTIPPDIPQI 638

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            A+  RL Q+   +LSNA+ F+     + +           +VK++G  I  +  + +F 
Sbjct: 639 AANIGRLEQVLINLLSNAIKFNRPQGWIEISVEPRGAWLRINVKDSGVGIAPEDQERIFA 698

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F         R  GVGLGL+I    I   GG + ++S+    +   C +P
Sbjct: 699 EFQRARSPNGERVHGVGLGLAICRRLITHMGGTIGVTSTPGEGSVFYCDLP 749


>gi|75907786|ref|YP_322082.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701511|gb|ABA21187.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1550

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 11/251 (4%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R  + L         A   K++F+ ++S+E+R+P+  ++G T L+  +    LN +Q  +
Sbjct: 872  RQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNAVLGMTGLMLETL---LNQEQRDF 928

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +E I  S   LL L+N+ILDL+ ++AG M L      L+  + EV   +A + H   + I
Sbjct: 929  METIRISGDALLTLINEILDLSKLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSKGLEI 988

Query: 670  K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD---FIFSVK 724
              +I          D  RL QI   ++ NA+ F+S G  V  ++   +        F+V 
Sbjct: 989  AALIYRHVPIQLQGDASRLRQILMNLIGNAIKFTSFGEVVMRVELRSETPTTAIIHFAVT 1048

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            ++G  I  +    +F  F        R   G GLGL+I +  + L GG + + S     +
Sbjct: 1049 DSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGKGS 1108

Query: 783  TINCRIP-SKE 792
                 IP +K+
Sbjct: 1109 KFWFEIPFAKQ 1119



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            ++  +  +  +E   N         +D +S  V V    GRI   N A   +     + 
Sbjct: 380 LIYCEVIARQSMENILNEERNFISAVLDTVSALVIVLDSQGRIVRFNQACEVITGYSFDE 439

Query: 474 LSPGTHIRNI 483
           +  G H  N+
Sbjct: 440 VR-GRHFWNL 448


>gi|332532631|ref|ZP_08408507.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037847|gb|EGI74296.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 924

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 14/247 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L+   +  + A+ +K+ F+  +S+ELR+PL  +IGFT  L  +    LN  Q  Y++ I
Sbjct: 275 ELSFAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKT---PLNKHQKDYLDTI 331

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L+ +++DILD + ++AG M+L      L D +NEV   +A   H+  + + +  
Sbjct: 332 MLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHDKQLELSIYI 391

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
           + ++      D  R  Q+   +LSNA+ F+ KGS  V +     + +    + SV + G 
Sbjct: 392 NQQVPDDLTGDPTRFKQVLINLLSNAIKFTEKGSIKVDISHRLLDDERTSLLVSVTDTGV 451

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN- 785
            IP D   S+F  F        R   G GLGL I +  +    G ++++S+    T    
Sbjct: 452 GIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGNGTCFTF 511

Query: 786 ---CRIP 789
                +P
Sbjct: 512 NSVFSLP 518


>gi|307298320|ref|ZP_07578124.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916406|gb|EFN46789.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 776

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 130/241 (53%), Gaps = 10/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L         A+E K+SF+  +S+E+R+PL  I G   LLK +++      QS YV+ I+
Sbjct: 126 LERAKREAEDANEFKSSFMARMSHEIRTPLNAITGMAYLLKKTEISLT---QSMYVDRIT 182

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S  +L+++NDILD + ++AG ++L  ++  ++ ++ +V   ++ K+ E  I  ++  D
Sbjct: 183 QASNNMLSIINDILDFSKIEAGKVELEITSFSMDQIIQDVVNIVSYKIEEQGIGFRLSKD 242

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSS 729
             +   F  D++R+ QI   IL+NA  F+S G     V L A  +      FSV++ G  
Sbjct: 243 PLIPNWFFGDQKRIEQILLNILNNAAKFTSAGEVSLDVRLVAKENEKYHLSFSVRDTGIG 302

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + E+  K++F  F+       RR  G GLGLSIV++ + + GG + + S+    +T    
Sbjct: 303 MTEEQIKNLFMPFIQGDSTINRRFGGSGLGLSIVKNLVEMMGGKIEVFSTPGEGSTFIIH 362

Query: 788 I 788
           +
Sbjct: 363 L 363


>gi|163754675|ref|ZP_02161797.1| multi-sensor signal transduction histidine kinase [Kordia algicida
           OT-1]
 gi|161325616|gb|EDP96943.1| multi-sensor signal transduction histidine kinase [Kordia algicida
           OT-1]
          Length = 660

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 120/633 (18%), Positives = 254/633 (40%), Gaps = 53/633 (8%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY---------KKNTETEGIVFQK 235
              +S   S    +F+++       D  G++L  N +          ++      +++++
Sbjct: 49  EASVSEKTSQLAGVFENIIDAYLVMDLGGNVLKMNDAACELFGYNILEETLNVTSLIYKE 108

Query: 236 AIGESRKLFKEEIKKRMISS-SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
            +  + + F E I+K   S+ +A      + V  ++   +  +            GI  D
Sbjct: 109 DVAYAFESFSELIEKGRFSNYTARVYTKNKGVRWVQINASLIFDANE--KPIAAQGIIRD 166

Query: 295 VSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           ++ +   +D+L  +   L     NL  A+ + D+NR +   N  F E+++I ++      
Sbjct: 167 ITDQKKFDDKLIESENRLSTLILNLDSAVLLEDENRNIVLTNAKFCEIFKIPVS------ 220

Query: 351 SNDELLEFLRSANKLPEQL----NWKTWKENIFSV-YKSSETHKDTWHLPNGQTLHVIVT 405
              ELL+    +N   E      + K +   I  + ++  +       + +G  L +   
Sbjct: 221 --PELLKGQDCSNAAEESKILFKDPKLFINTINRILHEKKQVIGTELTMADGTILELDFI 278

Query: 406 SNPRGGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
              +GGT    +W + ++++            +     I +++ G+     D +I + N 
Sbjct: 279 PILKGGTYKGHLWTYRDISLNRKYSKSLEAQKEKYSSIIANMNLGLVEVDNDDKILMVNQ 338

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-- 519
           +F  +   +E+ L      +           E +          S++   K  QGT +  
Sbjct: 339 SFCEMSGYDEDELIGQIGGKLFPIAEDENIIERENKKRLNGTSNSYEINVKDKQGTPKNW 398

Query: 520 LLSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           L+S +    L+  +I      ++   +++T+    E+   +  E L K++     +   V
Sbjct: 399 LISGAPNYNLDGEVI-----GSIGIHLDITELKNLEKQKEKILEKLEKSNNELYEYAHIV 453

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S++L+SPL +I      +K    G  +    Q ++ I  +  I+ NL+++IL+ ++  AG
Sbjct: 454 SHDLKSPLRSINALVSWIKMDNEGKFDDPTLQNLKLIEDTLEIMENLISNILEYSS--AG 511

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
                   + LN  + ++ + +    H     I +    KL     D  +  Q+F  ++S
Sbjct: 512 SETAASKEVDLNTTMEDLHRLLFVPEH-----ISINILKKLPVVKGDPTKFQQLFQNLMS 566

Query: 697 NAMDFSSK-GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           NA+ F  K    V +    +   + FSV++NG  I +     +F  F S      +   G
Sbjct: 567 NAIKFCDKDNGIVEIDVVEEPSFYQFSVRDNGIGIDKKFHDRIFKIFHSLNKS--KESTG 624

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +GLSIV+  ++L+ G++ + S     TT    I
Sbjct: 625 IGLSIVKKIVDLYEGNIWLESELGEGTTFFFTI 657


>gi|332142950|ref|YP_004428688.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|332143005|ref|YP_004428743.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552972|gb|AEA99690.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327553027|gb|AEA99745.1| Multi-sensor Signal Transduction Histidine Kinase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 908

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 166/341 (48%), Gaps = 12/341 (3%)

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCS----RYYNESDGWDLFAAIITSFDDERKSL 514
            N     +          G +I  ++A        +  + D    +A    +  D  KSL
Sbjct: 413 VNRLANEVSDGCALNGIRGMYISCVSAKLGYFTVWFREQRDKTIRWAGKEAAKKDVGKSL 472

Query: 515 --QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIK 569
             + + ++   SV + S+    + + ++   +      A   + +L ++   L + D+ K
Sbjct: 473 TPRNSFDMYLQSVADESVEWSEDDKLIIEGFDHLFIPYALSLKASLDKQISKLEELDKAK 532

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+ELRSPL +I+G+TDL           + +  +  I  +++    L+NDILD
Sbjct: 533 DQFLASISHELRSPLNSIVGWTDLALMDVSNV--DRMTDALGVIKRAASTQAALINDILD 590

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           L+ + +G MKL+  ++ +   ++EV +S        NI++ +  + +    + D  R+ Q
Sbjct: 591 LSRIISGTMKLSTHSLNIASSISEVAKSFEAGFASKNIQLSISCEDEHTQILGDNLRIKQ 650

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + + +LSNA+ F+SKG TV ++  R++ ++   VK+NG  + ++    VF RF       
Sbjct: 651 VINNLLSNALKFTSKGGTVHVRGRREHSNYTLRVKDNGKGMTQEQVAHVFERFYQGKDSH 710

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
            + G+GLGLSIV+S + +HGG + + S      T+ N  +P
Sbjct: 711 NKHGLGLGLSIVKSLVEMHGGEIQVHSDGPNTGTSFNITLP 751


>gi|218259710|ref|ZP_03475337.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224937|gb|EEC97587.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii
           DSM 18315]
          Length = 514

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/526 (20%), Positives = 209/526 (39%), Gaps = 48/526 (9%)

Query: 294 DVSKEITVNDQLTH-TYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNP 350
           D+   +   D L      IL  L + + + D        + NR   E+  ID   +  + 
Sbjct: 9   DIRPILQKQDSLHELINTILDKLPLGVFVKDAEDDFRYLYWNRFMEEITGIDTEEVEGHN 68

Query: 351 SNDELLEFL----------RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
             +   + +          R   +    + +     + + + K  E  K    L NG+ L
Sbjct: 69  DFELRFDAIMSAEERLGLDRDVMETGRTIEFSGKISDAYGIRKDIEVTKFPIALSNGKPL 128

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI--DHLSEGVAVFGPDGR--- 455
                       + ++ ++TV+  +E        +    +  + +        PD +   
Sbjct: 129 -----------LLALWRDVTVRNKMENTLRRSQVLTKMALHSNDIRLCSIFVNPDSKRNY 177

Query: 456 ---IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
              +   N       K +E                 R  ++     L A  I+    E +
Sbjct: 178 DDAVVQVNN--WLPGKEDELIDISWPRFAARVHPDDRERHDEAFRKLCAGEISEVKIELR 235

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQ------TMLTFVNVTDSVRAERALTEKNEALRKAD 566
                 E+++    E S       +       +   +N+ +    E  L E       AD
Sbjct: 236 V--KYPEMINYHWRESSATVYERDERGRALVILGCTINIQERKGQELNLEEAKHKAELAD 293

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           ++K+ ++  +S+E+R+PL  I GF++L+        + ++  Y E I  ++ +L+ L+ND
Sbjct: 294 KMKSKYLADMSHEIRTPLNAITGFSELMA---FADSDEERKGYYEIIKTNNLLLMQLIND 350

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ ++A  +K++Y  + +N+L++    SI  +M E  +++ +        F  D  R
Sbjct: 351 ILDLSKIEADAIKISYEPVDINELMDTTFASIKLRMPE-GVQLFLEKGSCTCRFGTDSIR 409

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           LLQ+ + + +NA+  + +GS  +      +    F VK+ G  I +D  +S+F RFV   
Sbjct: 410 LLQLINNLANNAIKNTKQGSITLGYTCLPDKHLKFYVKDTGIGIAKDKLESLFTRFVKVN 469

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 G+GLGL+I +  +   GG + + S     +T +  +PS E
Sbjct: 470 DY--VEGIGLGLAICQGLVTKMGGSMHVESELGIGSTFSFVLPSHE 513


>gi|330897590|gb|EGH29009.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 761

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 147/368 (39%), Gaps = 6/368 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G I   N     +    E  +        
Sbjct: 241 ERERALRDNEERLRLIIEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVF 300

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 301 YLQQECPQHPDMALHEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKIT 360

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 361 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 419

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   + +I  +   LL L+N++LD+A ++AG + L    + L+ +L E    ++   
Sbjct: 420 ---QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMA 476

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI +K + +       VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 477 ADANIELKPLPNLPDEIGVVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAEQVTV 536

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ +  
Sbjct: 537 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 596

Query: 782 TTINCRIP 789
                 +P
Sbjct: 597 CRFILALP 604


>gi|317496244|ref|ZP_07954604.1| hsp90-like protein [Gemella moribillum M424]
 gi|316913819|gb|EFV35305.1| hsp90-like protein [Gemella moribillum M424]
          Length = 647

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 163/400 (40%), Gaps = 24/400 (6%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           T+  I T++  G    +F  ++ +++ E     T  +     I+ + +G+     +GRI 
Sbjct: 258 TVVGIDTNDEIGDLAKVFNKISKRIEEEQAVTETERRKLATIIESMMDGIITTDNNGRII 317

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNESDGWDLFAAIITSFDDERKSLQG 516
           L N +   +    +  +  G     I       +  +    +    + TS  DE   L+ 
Sbjct: 318 LINTSAEDMIGARDEEIFIGKDALKILNITEYEHIGDIIEAEDSLLVNTSKTDESLLLRA 377

Query: 517 TL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
              +++ +   + + +       ++   +VTD  R E+               +  FV  
Sbjct: 378 EFSKIVKEEKEDLTQMSTELEGYIIVLYDVTDQERQEKE--------------RREFVST 423

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PLT +  + + L+   +        Q+++ I   +  ++ +VN+++ L  +D 
Sbjct: 424 VSHELRTPLTTMNSYIEALEEGVIND-KELAPQFIDTIHKETNRMIRMVNELMQLGKMDI 482

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
                    I +N L+ ++         E N      +         D+ +L Q+F  I+
Sbjct: 483 KEEHYEKEFIDINKLIEQISNRFELTHPEKN--FIKHTSKTPIFVEGDQDKLTQVFDNIM 540

Query: 696 SNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           +NA+ +S  G  + ++  ++  +     S+K+ G  IP      +FNRF       QR  
Sbjct: 541 NNAIKYSPNGKNITIRVRQNYNHNRVNISIKDEGVGIPLVHIDKIFNRFYRVDKSRQRSM 600

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL++ ++ I  H G +   S +   T I   +P +
Sbjct: 601 GGTGLGLALAKNIIEAHKGRIWAQSREGYGTIIFVTLPCE 640


>gi|301100816|ref|XP_002899497.1| hybrid signal transduction histidine kinase, putative [Phytophthora
            infestans T30-4]
 gi|262103805|gb|EEY61857.1| hybrid signal transduction histidine kinase, putative [Phytophthora
            infestans T30-4]
          Length = 2036

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 122/682 (17%), Positives = 259/682 (37%), Gaps = 83/682 (12%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +        +++      + L +
Sbjct: 881  FEFPLVTKAGRRVEIL-----LNATPRFNEHGTVIGMVGIGQDITDRIAQEQEYAR-LIE 934

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES------RKLFKEEIKKRMIS 254
              +  ++  D  G I   N    K  E      ++A+G+        + +++ ++  +  
Sbjct: 935  KANAPIFGVDSEGKINIWNH---KTAEMTRFSKEEAVGKDLMSWAIPEQYRDAVETILWK 991

Query: 255  SSALEKNFCETVSTLEHGNN----KSYKIVRVLNSF---GEAGIAIDVSKEITVNDQLTH 307
            +   ++     V   +        +     R        G  GI  D++  I    + T 
Sbjct: 992  ALEGDETSNFDVELKKKTGRTVNIRMNATARFDQHGQIVGVVGIGQDITDRIVQEQEYTR 1051

Query: 308  TYEILHNLTV-AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
              +   N  +  +   D N  +   N+   ++ +   A +        + E L      P
Sbjct: 1052 LIDT-ANAPIFGV---DANLCVNIWNKKAAQITKYSTAEV--------IGENLVETFISP 1099

Query: 367  EQLNWKTWKENIFS-VYKSSETHKDTWHLPN--GQTLHVIVTSNPRG-------GTIWMF 416
            E   ++    ++FS      +T    + L    G  + +++ + PR        G + + 
Sbjct: 1100 E---YRPAVADVFSKALNGIQTANFEFPLITRPGTRIEILLNATPRNDMHGNIVGVVGIG 1156

Query: 417  ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +++T ++  E +Y  L       ID  +  +      G +   N     +    ++ +  
Sbjct: 1157 QDITDRIAQEHEYFRL-------IDTANAPIFGVDTFGCVNEWNQKIEEITGYHKSTVLG 1209

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             + +       +R    S+   L    +   D       G +EL   +    S++ L NA
Sbjct: 1210 LSLVDAFINAENR----SEVRKLLNQALIGID------VGEMELPMTTAAGRSLLLLVNA 1259

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                +  ++  ++R    + +   A +  +  K +F+   S+ELR+PL  ++G  +LL+ 
Sbjct: 1260 ---SSKKDMHGNIRGVIGVGQDYTAKKHMEAAKVNFLASFSHELRTPLNGVLGMLELLRD 1316

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             KL     +   YV     S ++LLNL+NDILDL+ ++AG M+++     + DLL    +
Sbjct: 1317 QKLDKTPER---YVHIAYISGSLLLNLINDILDLSKIEAGHMEISADPFQMEDLLEYSVE 1373

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
                K  E +I++K+    K+    + D  RL Q+   +LSNA+ F+++GS + ++    
Sbjct: 1374 IFKFKAREKHIKLKLECSPKVPKRVIGDVSRLRQVLLNLLSNAIKFTNEGS-ITVRCNMV 1432

Query: 714  ------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
                  +     +F V + G  + ++    +F+ F       +    G GLGL+I +  +
Sbjct: 1433 PSPDLPKHCVKLLFQVIDTGVGMDDEEKSRLFSLFTKLERTRKNNPTGSGLGLAICKQLV 1492

Query: 766  NLHGGHVSISSSDEGVTTINCR 787
             L  G + + S     +     
Sbjct: 1493 ELMDGDIDVDSELGEGSEFFFT 1514



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/372 (12%), Positives = 112/372 (30%), Gaps = 53/372 (14%)

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           F+    T+    + I        A  R     G  + +  T             +  L D
Sbjct: 521 FEFPLVTKTGRQLDIL-----LNATPRF-DHSGAITGVVGTGQDFTDQRAQEEEYIRLID 574

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG-ESRKLFKEEIKKR-----MIS 254
           + +  ++  D  G +   N   +K          +A G    + F     +      +  
Sbjct: 575 TANAPIFGIDMDGRVDIWN---RKAVAITEYTVLEARGTRLVESFIPHDYRAGVSDVISK 631

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-------GEAGIAIDVSKEITVNDQLTH 307
           +   E         +     +   ++     +       G  GI  D+++ I    + + 
Sbjct: 632 AMEGEGTANFEFPLITKTGRRVDILLNATPRYNQHGEIVGVVGIGQDITERIVQEQEYSR 691

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              ++      I   D    +   N    E+ +     +      D + EF+        
Sbjct: 692 ---LIDTANAPIFGVDMAGLVNIWNDKSAEITQFTADEVMGK---DLVQEFISEG----- 740

Query: 368 QLNWKTWKENIFS-VYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWMFE 417
              +++    + S      +T    + L   +G+ + +++ + PR        G + + +
Sbjct: 741 ---YRSAVGLVLSQALNGVQTANFNFPLITKSGRRVEILLNATPRYNELGEIVGVVSIGQ 797

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T ++  E +Y+ L       ID  +  +     +G + + N     + +   + +   
Sbjct: 798 DITERIAQEQEYSRL-------IDTANAPIFGVDKEGCVNIWNKKAAEIMQYSNDEVVGE 850

Query: 478 THIRNIAATCSR 489
             +        R
Sbjct: 851 NLVEKFITEDYR 862



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 103/326 (31%), Gaps = 48/326 (14%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQKAIGESRKLFKEE 247
           S + ++    +  +   D+ G I   N   +  T        G      + +  ++   E
Sbjct: 205 SQYALVAQQANAPIVELDRDGRITLWNPKAEALTGYAIDQVIGTPLVDLVHDEFQVLVAE 264

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVLNSFGE-------AGIAIDVSKE 298
           +  R+ S++         + T   G      + +       G          I  DV+  
Sbjct: 265 LLARVASTNTSVSELELPLKT-ASGARVELLFSLTPQATVDGVDTTVNRIVAIGQDVTAR 323

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLE 357
                + +   +++ +    I   D    +   N+   ++        +       EL+ 
Sbjct: 324 NASEMEHS---KLVDSANAPIFGVDTEGCVVIFNKKAAQISGYWPGEVMGV-----ELVS 375

Query: 358 FLRSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHL--PNGQTLHVIVTSNPR----- 409
           FL          +++     +F    +  ET    + L   +G+ + +++ + PR     
Sbjct: 376 FLIHE-------DYREKVAAVFQKALRGIETANFEFPLITKDGRRVEILLNATPRYNHAG 428

Query: 410 --GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
              G + + +++T ++  E +YN L       ID  +  +       R+ + N    +L 
Sbjct: 429 AIVGVVGIGQDITERIVQEQEYNRL-------IDTANAPIVGVDKKFRVTIWNKKAATLT 481

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNE 493
                +      +  IA        +
Sbjct: 482 DYSYTQAIGKDLLGFIAEHARDTVAD 507



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 97/294 (32%), Gaps = 46/294 (15%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK--LFKEEIKKRMISS 255
           L DS +  ++  D  G ++  N   KK  +  G    + +G      L  E+ ++++ + 
Sbjct: 333 LVDSANAPIFGVDTEGCVVIFN---KKAAQISGYWPGEVMGVELVSFLIHEDYREKVAAV 389

Query: 256 SALEKNFCETVS---TLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQ 304
                   ET +    L   + +  +I+              G  GI  D+++ I    +
Sbjct: 390 FQKALRGIETANFEFPLITKDGRRVEILLNATPRYNHAGAIVGVVGIGQDITERIVQEQE 449

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                +  +   V +   D+   +   N+    L +              + E  R    
Sbjct: 450 YNRLIDTANAPIVGV---DKKFRVTIWNKKAATLTDYSYTQAIGKDLLGFIAEHARD--- 503

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWM 415
                   T  + +       ET    + L    G+ L +++ + PR        G +  
Sbjct: 504 --------TVADVLSKAMGGVETPNFEFPLVTKTGRQLDILLNATPRFDHSGAITGVVGT 555

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            ++ T Q   E +Y  L       ID  +  +     DGR+ + N    ++ + 
Sbjct: 556 GQDFTDQRAQEEEYIRL-------IDTANAPIFGIDMDGRVDIWNRKAVAITEY 602



 Score = 45.7 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 86/291 (29%), Gaps = 33/291 (11%)

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ----LTHTYEILHNLTVAIAIF 322
            +   G  +S +     +  G        S                + IL          
Sbjct: 41  PSATAGTRRSRRDSNCSSGSGIDADDRRPSIASATERISPGLHPRLFRILSEANAPALAM 100

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D    + F N    EL  +    +   P  + +     +          +  + +I +  
Sbjct: 101 DMTGRVTFWNHKLAELCGLPSVDVVGRPITELVTAHTTADVM----RGLEQARSDINATV 156

Query: 383 KSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
              E   +T  L  G+ + ++V         N     + + +++TV +        LV  
Sbjct: 157 YGVEIELNTPEL--GRNVKLLVNLTVDVDDKNKASSVVAIGQDVTVWMQGSQ--YALVAQ 212

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           Q          +     DGRI L NP   +L     +++     +  +         E  
Sbjct: 213 QANA------PIVELDRDGRITLWNPKAEALTGYAIDQVIGTPLVDLVHDEFQVLVAE-- 264

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVN 544
                 A + S +     L+  L+  S + +E  +S+ P      + T VN
Sbjct: 265 ----LLARVASTNTSVSELELPLKTASGARVELLFSLTPQATVDGVDTTVN 311


>gi|56698679|ref|YP_169056.1| hypothetical protein SPO3868 [Ruegeria pomeroyi DSS-3]
 gi|56680416|gb|AAV97082.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 500

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/383 (22%), Positives = 171/383 (44%), Gaps = 17/383 (4%)

Query: 174 IYSELAE--TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
           +  EL      L   +        ++  D   + VW+ D  G I W N +Y        +
Sbjct: 117 VRVELRRHCAALDGVRRIPDTDPLRLAMDQAPYPVWYLDGDGGIRWCNAAYV-------M 169

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
           + +K  G + +LF   +        +  K    +++  E      + +V V    G    
Sbjct: 170 LARKVRGRNPELFD-PLFPDTSDIGSPGKKTRISITIGETRTKLWFDVVIVPQDTGCLCY 228

Query: 292 AIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           A+D++     EI   + +    +    L++ +AIFD+NR L   N + ++L  +   FL+
Sbjct: 229 AMDINAVVDAEIAQRNFVQTLAKTFAQLSIGLAIFDRNRQLALFNPALIDLTCLPADFLS 288

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVT 405
           + P      + LR+ N +PE  N+  W++ +  + +++    +++TW LP+G    V   
Sbjct: 289 SRPEVSSFFDRLRNLNMMPEPKNYGGWRQQMNDLLQAASKGNYQETWSLPSGSVYSVSGR 348

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            +P G   ++FE++T ++ L  ++ + +++    +DHL   +AVF  DG +  SN A+  
Sbjct: 349 PHPDGAVAFLFEDITAEITLTRRFRSELELGQAVLDHLDAAIAVFASDGSLAFSNAAYHQ 408

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           LWK++  R      I +   T       +  W      + S ++ R   +G ++L S + 
Sbjct: 409 LWKSDPERSFAQVTILDATRTWQDLCTATPVWGEIRDFVDSREN-RVEWEGQVQLRSGAN 467

Query: 526 LEYSIIPLPNAQTMLTFVNVTDS 548
           L  ++ P+ N  T+++F  + D 
Sbjct: 468 LTCTVSPIQNGSTLISFTTLIDD 490


>gi|28900955|ref|NP_800610.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260366168|ref|ZP_05778628.1| putative lipoprotein [Vibrio parahaemolyticus K5030]
 gi|260879810|ref|ZP_05892165.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260894484|ref|ZP_05902980.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|28809401|dbj|BAC62443.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086387|gb|EFO36082.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308092066|gb|EFO41761.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308114882|gb|EFO52422.1| putative lipoprotein [Vibrio parahaemolyticus K5030]
          Length = 785

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 7/266 (2%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +++ L  +        + +  +    L  + +   +A + K+SF+  +S+ELR+P+  +
Sbjct: 229 VAVMLLVGSFLYQLQYRMHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGV 288

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G + L+       +     ++++ I  S   L+ ++NDILD + V+   ++L  +   L
Sbjct: 289 LGISQLIAEETKEPVT---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEKAPFHL 345

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +L  V  +I   + E +I + V +D      F  D  RL QI   +  NA+ F+++G 
Sbjct: 346 EQVLTPVCSAIQPLIDEKSIDLIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNEGH 405

Query: 707 T-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             +  +   ++   +  V + G  I  D    VFN F        RR  G GLGL+IV+ 
Sbjct: 406 VLIRTELNSEDKHLLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKK 465

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              L GG +++ S +   T     +P
Sbjct: 466 LTELMGGSITLKSVEGVGTQFIVTLP 491


>gi|315923456|ref|ZP_07919696.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313697331|gb|EFS34166.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 419

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSPG 477
           +V  +      +K     + +++    +   D  +  +N                R+   
Sbjct: 26  EVHSKENKENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPIQVGGVTKRVGDL 85

Query: 478 THIRN-IAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLP 534
            H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   + +   + 
Sbjct: 86  LHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTPCDVS 145

Query: 535 NAQT----------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            + T          +LT  +VT+   A+R L+ + E    AD++K++F+ ++S+E+R+PL
Sbjct: 146 VSGTYLNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPL 205

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ L+      S   ++  Y + I+ ++  LL LVNDI DL+ +++G +   Y+ 
Sbjct: 206 NAIVGFSGLM---VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTE 262

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              NDLL E++    TK++ +++ +   +  +     ++R+R++Q+ S +L NAM F+  
Sbjct: 263 FDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTES 322

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G   +  + +   +  F V + G  IP++  K +F+RF+      + +G GLGL++ ++ 
Sbjct: 323 GEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD--REMQGTGLGLTLSQTI 380

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I   GG++ + S     +T +  +P
Sbjct: 381 IQNLGGNLELDSEINRGSTFSFVLP 405


>gi|256840816|ref|ZP_05546324.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738088|gb|EEU51414.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 555

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 227/525 (43%), Gaps = 56/525 (10%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIF------DQNRYLQFHNRSFVELWEIDLAFL 346
           ++ ++  T+         +L N+  ++ I+        N    + +    +L+      +
Sbjct: 56  VNTTENKTLEQDYRDLAGLLSNIVDSLPIYFFVKDTGDNFRYVYSSPLMNQLYGRYHNDV 115

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNG--QTLHV 402
                 D  L+           +  +++++    V K+ +  +    +  P G  +T+  
Sbjct: 116 VGKTDFDLFLD----------PVVAQSFRDMDEEVVKTGKMQRFVEQMIDPKGILRTMDT 165

Query: 403 IVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           +    PR       + +  ++T Q  +E + ++  K            +A+    G+I  
Sbjct: 166 MKLLAPREDKPPYLVGISWDITKQRQVEEELHSYNKR-----------LALACQAGKIYP 214

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAIITSF-DDERKSLQ 515
               +  +  T E  L     I+++  T + +      D   ++  I T+F   E  S++
Sbjct: 215 W--LWDLVNGTAELSLEENGQIKHVQITHASFTEKIHPDYRKVYENITTAFMRGEIDSMR 272

Query: 516 GTL--ELLSDSVLEYSII-----PLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKAD 566
            +      SD  +    I       P+ + + +   + D    +   A  +      ++D
Sbjct: 273 FSFPCRYFSDEYVWLEKIGEVYEADPDGKPIRSIGILRDMTVDKRHEADVQAKRLAEESD 332

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL  S        + +Y+  I +S+  LL L+ D
Sbjct: 333 RMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEE---KKEYLRIIESSNEFLLQLIGD 389

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ +++G M+  Y+T+ L+++    +Q+ A ++    +++   SDG     V+++ R
Sbjct: 390 ILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAP-GVKVIFESDGNDYCIVSEKTR 448

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+ +  LSNA+ F+S GS +       +      V + G  I ++   S+FNRFV   
Sbjct: 449 LTQVLTNFLSNAVKFTSSGS-IRFGYRLTDDGIYVYVTDTGMGISKESQASIFNRFVKLN 507

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 508 SF--KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 550


>gi|220909136|ref|YP_002484447.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
 gi|219865747|gb|ACL46086.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
          Length = 587

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 19/242 (7%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +K+ F+  VS+ELR+PL  I+G++ LL   KL S   +  Q ++ I  ++ +   L+ 
Sbjct: 166 NRMKDEFIAVVSHELRTPLNAILGWSQLLIGGKLSS--ERTQQAIQTIERNARMQAQLIG 223

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DIL++  +  G + L+  ++ LNDLL  + +S+        +R++   D       AD  
Sbjct: 224 DILEMTKLTQGKLHLSLQSLNLNDLLASLVESMQPLAEPKGLRLQSQLDPLPRWVNADPV 283

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDN--------------GDFIFSVKNNGSSIP 731
           RL QIF  +L+NA+ F+  G  + +K                        S+ + G  I 
Sbjct: 284 RLRQIFWNLLTNAIKFTPAGGEIWVKLETGGTAALSSLTTDSIPASFVKISITDTGIGIS 343

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
            +    VF+RF        R   G+GLGL+IV   + LH G + + S      TT    +
Sbjct: 344 PEFLPHVFDRFRQADGSATRAQGGLGLGLAIVRQLVELHQGRIEVFSQGRGQGTTFTLHL 403

Query: 789 PS 790
           P 
Sbjct: 404 PL 405


>gi|86751212|ref|YP_487708.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574240|gb|ABD08797.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 557

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 164/433 (37%), Gaps = 20/433 (4%)

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQTLHVIVTSNPRGG-----TIWMFEN 418
           +PE+L     +    +  +   T  +      +G    + +  +P              +
Sbjct: 1   MPERLIADKLRTAEDARTQQIGTGIELIARRKDGSEFPIEIMLSPLDSPEGVLVTAAIRD 60

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ + D E     +       ++   + + V    G I L N      +    + L  G 
Sbjct: 61  ISERKDAEKHLVQMEGRYQALLEAAPDAMVVVNQTGEIVLLNLQAEKQFAYRRDELL-GQ 119

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            + NI          +D        +         L G  +  S+  +E  + PL +  +
Sbjct: 120 KVTNIIPEGFAERLIADRLRSREDALAQHIGAGIELTGRRKDGSEFPIEIMLSPLESEGS 179

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L    + +    +             + +++ FV  VS+ELR+PLT+I G   LL    
Sbjct: 180 ILVTAAIREISARK-----------HMERLRDEFVATVSHELRTPLTSISGSLGLLVGQW 228

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +G      ++ V     +S  L+ L+NDILD+  +  G +  N   + ++ ++ +  +S 
Sbjct: 229 VGIFPEPAARLVAIAYKNSQRLVRLINDILDIEKLGDGRVVFNLCRVDVHAIVEQAIESN 288

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   + + + +  +     AD  RL Q+ + +LSNA+  S  G  V++     +  
Sbjct: 289 RGFAEGYGVNVGLTTASRSSDVNADPDRLAQVITNLLSNAIKASPPGRDVLVAVEPHDAF 348

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV++ G  IP      +F +F         Q+ G GLGLSIV+  +    G VS   
Sbjct: 349 VRISVRDQGDGIPATFRLHIFEKFAQADATDARQKGGTGLGLSIVKQIVERLNGRVSFED 408

Query: 777 SDEGVTTINCRIP 789
           +  G T     +P
Sbjct: 409 AAGGGTVFCVDLP 421


>gi|109899905|ref|YP_663160.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109702186|gb|ABG42106.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1172

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 141/759 (18%), Positives = 286/759 (37%), Gaps = 74/759 (9%)

Query: 74  SLLTENNCLTIVWDGK-----DETPEII-GQLHQRIDIPQTDTDLLSFENWLKFHHYIKL 127
                +    I WD +        P+++ G+L Q  D+   D          K      L
Sbjct: 151 WEFNLDEQKLI-WDEQMYTLYGCNPKVVSGELSQWSDLLHPDD---------KEEALSAL 200

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRV----SGSCAFLRILSLDGIYSELAETTL 183
           + +  K+ K   +F ++        ++   R     +G+ A      + G+  ++     
Sbjct: 201 NHSLTKIAKLDIAFRIITPCGETRHMRAFARPLRSPTGNVA-----KIIGVNYDIGAQKQ 255

Query: 184 KCKKLSNHI---SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-EGIVFQKAIGE 239
             + L N +    +F  +    D  V   D+   I W N  + + T      +  K  G 
Sbjct: 256 HQQWLENGLQSNELFIKVLRETDNAVIITDENVKIKWVNPGFTRITGYYLEEILGKNPGH 315

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLE---HGNNKSYKIVRVLNSFGE-----AGI 291
             +  +    K  I   A+EK     V  L     G +   KI       G        I
Sbjct: 316 VLQGSQSNPDKIAIMRRAVEKRERFNVEILNYRRDGEHIWLKINSHPMYLGGKFNGFIAI 375

Query: 292 AIDVSKEITVNDQLTHTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             D++++      L    +I    L +  + +   D    +   N++  +      A L 
Sbjct: 376 QSDITEQKNAELALLKANKIQKAILDSAHLLMISCDAQGKILTCNQTVEKALGYTKAELK 435

Query: 348 TN------PSNDELLEFLR---SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
            +         +EL++F++             +    +      + +   K+   +P   
Sbjct: 436 QSGNIQQFMMQNELIDFMQVSTQRQGSSLDAFFYLASQGQVDENQWTFVTKNNVQVPMEV 495

Query: 399 TLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRI 456
           T+  +++ + +     +   +++     E +      +   T +  + G      +   +
Sbjct: 496 TVTGVMSPDNQVERYLLVGRDISQIKQFEKERRHQQDLLETTGEMANLGGWALNLETDEV 555

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS-LQ 515
             S+  +R       + L  G+ +    ++  ++Y E     +  AI +S    +K  LQ
Sbjct: 556 TWSDQVYRI------HELPVGSDVD--LSSAMKFYPEDVRPLVQKAIDSSIAAGKKWDLQ 607

Query: 516 GTLELLSDSVLEYSII---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                     +    +      N + ++      D    ++A     E  ++A   K+ F
Sbjct: 608 VPFITAKGKHIWVRAVGYAEYQNGRPVVLRGAFQDITEMKKA----EEQAKEASRAKSEF 663

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  I+G  DLL  ++   L  KQ  + E + +SS  LL L+NDILD + 
Sbjct: 664 LANMSHEIRTPINGIVGMNDLLLATE---LTDKQRHFAELVHSSSESLLLLINDILDFSK 720

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIF 691
           ++AG + +      L+ LL  +  + A++  +  + +       +  ++  D  R+ QI 
Sbjct: 721 IEAGKLSIESIYFDLHLLLGNIIDTFASRAQQKGLELVFDLQMDVPQWITSDPGRIRQIL 780

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + +L NA+ F+  G  ++  A   +    F V++ G  I ED  K++F++F+       R
Sbjct: 781 NNLLGNAIKFTHHGEVIMRVALEGDNQLKFFVQDTGIGIHEDNQKALFSKFMQVDSSTTR 840

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGL+I +    L GG V +SS  +  +T    I
Sbjct: 841 HFGGTGLGLAISKQLSELLGGTVGVSSQWQQGSTFWFTI 879


>gi|91778586|ref|YP_553794.1| signal transduction histidine kinase (STHK) with CheB and CheR
            activity [Burkholderia xenovorans LB400]
 gi|91691246|gb|ABE34444.1| signal transduction histidine kinase (STHK) with CheB and CheR
            activity [Burkholderia xenovorans LB400]
          Length = 1303

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/489 (21%), Positives = 201/489 (41%), Gaps = 21/489 (4%)

Query: 308  TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               +L +  +A  + D++  ++    S   ++ + LA +   P  + L   L        
Sbjct: 686  VANLLASTEIATLLLDRHAVIKRFTPSAARIFGLALADID-RPITNVLGNPLGDTLL--- 741

Query: 368  QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
            +   +          K  +T    W++    T ++ V   P  G +  + ++T     + 
Sbjct: 742  EDVQRVMSAQTGQAEKEIQTLTGEWYVRR-ITPYIAVQGTPPAGVVVTWNDITHVKASDE 800

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            +   L  V  ++ D ++    VF  +GR+   N A  +++   E      T    + +  
Sbjct: 801  RSRRLAAVVQDSNDAMT----VFDLNGRLIAWNRAATAIYGYTEAEALCMTVSDMLPSGA 856

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM---LTFVN 544
             + + +   +      + S++ +R +  G +    D  +  SI+       +    T   
Sbjct: 857  RQDHLDFIRYAEHNEALHSYETQRVTKSGRVL---DIWITLSILSDNQGHAVAVATTERE 913

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +TD   +   L E+ E L +AD  KN F+  + +ELR+PL  +    DLL +    S+++
Sbjct: 914  LTDRSLSNTQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSAGDLLASE---SVDA 970

Query: 605  KQSQY-VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  + V  I      +  LVN++LDL  + +G +KLN   + L  ++    +     + 
Sbjct: 971  RQKVWAVGVIQRQGQAMTQLVNEMLDLTRIASGSIKLNRQAVTLETVVQSALEVCRPIVE 1030

Query: 664  ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            E +  + V    +      D  RL Q+   I+ NA  ++  G  + L A R        V
Sbjct: 1031 ERHHTLSVALPEEPVLMFVDPTRLSQVIENIVINAAKYTEPGGKIDLSATRTGRRLSLRV 1090

Query: 724  KNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++NG+ I   M  ++F+ FV     H     G+G+GLS+V   + LHGG V   S  +  
Sbjct: 1091 RDNGAGIAPSMLNTLFDMFVQGPLPHGQLHNGLGVGLSVVRRLVELHGGTVEAVSDGKTG 1150

Query: 782  TTINCRIPS 790
            +     +P 
Sbjct: 1151 SEFIVDLPL 1159



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 71/212 (33%), Gaps = 18/212 (8%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE--AGIAI---DVSK 297
              + + + +    + +    E       G     +I   +   G   AG+ +   D++ 
Sbjct: 735 PLGDTLLEDVQRVMSAQTGQAEKEIQTLTGEWYVRRITPYIAVQGTPPAGVVVTWNDITH 794

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA---------FLAT 348
               +++      ++ +   A+ +FD N  L   NR+   ++    A          L +
Sbjct: 795 VKASDERSRRLAAVVQDSNDAMTVFDLNGRLIAWNRAATAIYGYTEAEALCMTVSDMLPS 854

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
               D  L+F+R A       +++T  + +    +  +       L + Q   V V +  
Sbjct: 855 GARQDH-LDFIRYAEHNEALHSYET--QRVTKSGRVLDIWITLSILSDNQGHAVAVATTE 911

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
           R  T     N T   +   +     + + E +
Sbjct: 912 RELTDRSLSN-TQLRERAERLAQADRRKNEFL 942


>gi|296107504|ref|YP_003619205.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295649406|gb|ADG25253.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 909

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 14/315 (4%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A   R   +    +    I  S   E   ++     L    L  ++  L +   + T  
Sbjct: 210 IARLRRSMKQILSNEFETEIRVSSPGELGIIEKGCAHLQRQYLN-TVRDLNHHIEIATAD 268

Query: 544 NVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                   E     L+ + +   +    K+ F+ ++S+E+R+P+  +IGFT++L  SKL 
Sbjct: 269 LQQSLELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLD 328

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  YV+ I +S+  LL+++NDILD + +DAG + L+   + +   ++EV    + 
Sbjct: 329 PL---QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASP 385

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
             H+  I +  I+D  +    + D  R+ QI S +++NA+ F+  G   +  K  ++   
Sbjct: 386 NAHKKGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDK 445

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
               +F++ + G  I  +    +F  F         +  G GLGL I +       G +S
Sbjct: 446 DYTLLFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRIS 505

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T + RI
Sbjct: 506 LTSEINKGSTFSARI 520


>gi|261250376|ref|ZP_05942951.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891]
 gi|260938945|gb|EEX94932.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891]
          Length = 1199

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 163/378 (43%), Gaps = 20/378 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q  L+ +    +      ++ L E V       +I        +L +T ++ LS  TH+
Sbjct: 337 RQTTLKQEVQNNLYAALRLLEALYEQVITQDEQLQI-------DTLSQTTQDYLSLFTHL 389

Query: 481 RNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             + +  S+          D+  AI   F+ +  +++ +  + ++  +   I        
Sbjct: 390 TALRSEKSQLELALTQSHQDIINAIQPGFESQLVAVEESGNITTNLAIGGGIFLFTLLLL 449

Query: 539 MLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            L    +     R    L    +    A+  K+ F+ ++S+E+R+P+  IIG + L   +
Sbjct: 450 GLLANKSHAALERFAEKLAVARDEANSANTAKSDFLANMSHEIRTPMNAIIGMSYLALKT 509

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q  Y+  +  S+  LL L+NDILD + ++AG + +      L ++L+ +   
Sbjct: 510 ---DLTKAQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIENVDFHLENVLDNITNL 566

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
           +  +  E  + + +  +  +  + V D  RL Q+   + +NA+ F+ KG   + ++ A+ 
Sbjct: 567 VGLRASERGLELLIHIERDVPTTLVGDPLRLGQVLINLANNAVKFTEKGEIKISVRVAKR 626

Query: 716 NGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
            GD     FSV+++G  + ++    +F++F        R   G GLGL+I +    L GG
Sbjct: 627 QGDDVELEFSVEDSGIGMTKEQTDKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGG 686

Query: 771 HVSISSSDEGVTTINCRI 788
            + + S     +  +  I
Sbjct: 687 DIRVESEFGQGSRFSFSI 704


>gi|258622337|ref|ZP_05717362.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
 gi|258585353|gb|EEW10077.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
          Length = 927

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|209695063|ref|YP_002262992.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208009015|emb|CAQ79245.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 697

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 125/255 (49%), Gaps = 6/255 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +++   +  + + +  +    A++ K+ F+  +S+E+R+PL  I+G  D+   S   
Sbjct: 304 TAKDISIRKKRLQQIQKAKQEAETANKAKSQFLAMMSHEIRTPLNAILGMVDVFNESL-- 361

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ +  S+ +LL +++D+LD++ ++AG   L+   I L + +         
Sbjct: 362 -LSKEQYEWLDQMEVSAQLLLAIISDVLDISRIEAGTFVLDEQPIDLLETIINSTNYFKE 420

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           K  +  I + V     +    +AD  R++QI   ++ NA+ F+ KGS  I     +    
Sbjct: 421 KSKDKGINLTVTVSHSVPNYVIADAARIMQIIFNLVGNAVKFTKKGSIWINITQTECNST 480

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
             ++ + G  I +D+  ++F  FV       R   G GLGLSI++    L  G +S+ S 
Sbjct: 481 KIAITDTGIGISKDVLNNLFQPFVQADSSITRQFGGSGLGLSIIKRLTELMNGVISVKSV 540

Query: 778 DEGVTTINCRIPSKE 792
               +T    +P KE
Sbjct: 541 INEGSTFTVTLPFKE 555


>gi|329851151|ref|ZP_08265908.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328839997|gb|EGF89569.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 680

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 6/249 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD  R E  L           + K+ F+ ++S+E+R+PLT I+G+ +LLK   +G L 
Sbjct: 281 DITDQSRYEETLRTAKRDAEAHQQAKSDFLSNMSHEIRTPLTTILGYANLLK--GVGDLP 338

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                Y+  I+ +   LL+L+ D+LD + ++AG + L+     L  L  +V         
Sbjct: 339 KDARHYIGRINKAGEALLSLITDVLDFSKLEAGQVTLDPQPTDLRQLAGDVVDQFMAMTD 398

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             NI I    D     ++  D  R+ Q+   ++ NA  F+  G  V +  A  +G     
Sbjct: 399 TRNITIGFDYDDASPVWLEIDDVRIRQVLYNLIGNACKFTHDG-YVAVTLAVSDGQLRVK 457

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK++G  +  +    +F RF    +    +  G GLGLSI    + L  G + + S    
Sbjct: 458 VKDSGPGLTPEQRSRLFTRFNQVDNSINRKYGGSGLGLSICHEIVKLMQGRIGVESEAGQ 517

Query: 781 VTTINCRIP 789
            +T    IP
Sbjct: 518 GSTFWFEIP 526


>gi|77460443|ref|YP_349950.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384446|gb|ABA75959.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 922

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 142/316 (44%), Gaps = 15/316 (4%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           I+   A     + E+    L +  +         + GTL+   +  L++S+    +  T 
Sbjct: 206 IKQAVAQLKDGHLETRLPPLGSQELDELASGINRMAGTLQNAREE-LQHSV----DQATE 260

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               N+         L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+ 
Sbjct: 261 DVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE- 319

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q  Y+  I  S+  LL ++N+ILD + ++AG + L++    L DLL +    +A
Sbjct: 320 --LTPRQLDYLGTIEKSADSLLGIINEILDFSKIEAGKLVLDHIPFNLRDLLQDTLTILA 377

Query: 660 TKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              H   + +  ++      S V D  RL QI + ++SNA+ F+ +G+ V      +  D
Sbjct: 378 PAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEND 437

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
                  S+++ G  +     +++F  F    +    Q  G GLGL I +  I   GG +
Sbjct: 438 DSVQLRISIQDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEI 497

Query: 773 SISSSDEGVTTINCRI 788
            + S+    +     +
Sbjct: 498 GVDSTPGEGSEFWISL 513


>gi|218514297|ref|ZP_03511137.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 434

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/419 (19%), Positives = 164/419 (39%), Gaps = 27/419 (6%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           + + +    +  G  I  +E+++  + +E             + ++  G+ +F    ++ 
Sbjct: 1   RMISLTCAPSREGSWILSYEDISTLIRVEDSLAEQHHRFDAALSNMPHGLCMFDSTRKLI 60

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L N ++  ++   +     GT + NI A  +   N       +  ++             
Sbjct: 61  LCNDSYARMYNLPDRLTQAGTPLANILAYRAEQGNGPADTATYFDVVFEATALGAPASQN 120

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL--------------- 562
           + L    +++ +  P+ N   + T  +VT +VR    L   ++ L               
Sbjct: 121 IALTDGRIVKITHNPMQNGGYVATHEDVTKTVRLAEELRRHHDQLEVTVRNRTAEVERQA 180

Query: 563 ----------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
                     R  +E++  FV   S+E R+PL  I      L            S   E 
Sbjct: 181 REVERMLTQERNINELQRQFVAMASHEFRTPLAIIDAAAQRLLRKGGAVEPEFLSDKAEQ 240

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I AS + +++L+  IL    +D G + ++Y    L  L+    +  +T +        + 
Sbjct: 241 IRASVSRIIHLMESILSAGRLDTGTIDISYGACALRSLIRSCCERQSTIL--KTHSFVID 298

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            DG      AD + L Q+F+ +LSNA+ ++   S + + A  + G+   S+ ++G  I  
Sbjct: 299 IDGLPEFIDADPRTLAQVFTNLLSNAVKYAPGTSEIRIAAWEETGNVRISISDDGVGIDA 358

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +    +F R+          G G+GL++V+  + LH G + + S+    +T    +P K
Sbjct: 359 EDVPLLFQRYFRARTSTGIAGTGIGLNLVKQIVELHQGSIEVQSARGCGSTFTVTLPIK 417



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 2/148 (1%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +  E ++ +Q       L N+   + +FD  R L   N S+  ++ +             
Sbjct: 26  IRVEDSLAEQHHRFDAALSNMPHGLCMFDSTRKLILCNDSYARMYNLPDRLTQAGTPLAN 85

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           +L +       P   +  T+ + +F              L +G+ + +       GG + 
Sbjct: 86  ILAYRAEQGNGP--ADTATYFDVVFEATALGAPASQNIALTDGRIVKITHNPMQNGGYVA 143

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDH 442
             E++T  V L  +          T+ +
Sbjct: 144 THEDVTKTVRLAEELRRHHDQLEVTVRN 171


>gi|288962966|ref|YP_003453260.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288915232|dbj|BAI76716.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1175

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 114/564 (20%), Positives = 211/564 (37%), Gaps = 42/564 (7%)

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            +   +S +  ++           G ++  ++ R L  +    I     K   ++     
Sbjct: 349 ARLWAVSEAIRDRTGGGRAEVPVTGADEIGQLARALRFY----IQETEDKSAALSRNEQW 404

Query: 308 TYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
              +L    V + I  + +  ++F NR   +L+E   A          +         +P
Sbjct: 405 LRTVLEVAPVPLVISGRADGQIRFVNRRAADLFEAAAAAELLGRPAASVW-------SVP 457

Query: 367 EQLN------WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           +  +      + +           + T +  W L +G               +    ++T
Sbjct: 458 QVRDEFVRDVFASGLALDVETELVTRTGRRLWGLLSGIAFEFQG----EEVLLSSVVDIT 513

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTH 479
            + + E             ID++   + V   D GR+ L N A    + T    +   T 
Sbjct: 514 RRREAEELLRRTRAFLDAVIDNVPSVLYVLEGDTGRVVLWNRAAEDCFATRRADIGDRTL 573

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +     R     D   + +  +      R   +  +  L     E+S       + +
Sbjct: 574 AEVLGPETGRALAGGDPGAMRSLGMEELVLPRNG-ENAVFALQRHPFEWSGD--GRCRII 630

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T S RA   L +  E   +AD  K  F+  VS+E+R+PL  I+G   LL T   
Sbjct: 631 CVANDITASRRAREELRQAKERAERADAAKTEFLATVSHEMRTPLNGILGLCRLLLT--- 687

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G L S + +Y   I      LL+ VNDILDL  ++ G ++L+ +   L  +L EV  ++ 
Sbjct: 688 GRLESGERRYAMSIMRCGHGLLDQVNDILDLRKIEDGKLELDPAPCALLPVLEEVVATVE 747

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD 715
              +E  I + +     + +  V DRQRL QI   ++ NA+ F+ +G     V ++ A +
Sbjct: 748 GLANEKGIGLGLDIAPAVPALVVVDRQRLRQILVNLVGNAVKFTERGGVDLRVDIETAPE 807

Query: 716 -------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
                        +V++ G  +P D   ++F +         RR  G GLGL+IV   ++
Sbjct: 808 HSGSGMIGERLRLAVRDTGIGVPADRRAAIFEKLEQADSTIARRFGGSGLGLAIVRHLLD 867

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
              G + + S +   +     IP 
Sbjct: 868 AMQGSIRVDSVEGLGSVFTVTIPL 891



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/297 (10%), Positives = 75/297 (25%), Gaps = 31/297 (10%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKA 236
           + ET  K   LS +    + + +     +       G I + N       E         
Sbjct: 388 IQETEDKSAALSRNEQWLRTVLEVAPVPLVISGRADGQIRFVNRRAADLFEAAAAAELLG 447

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------IVRVLNSFGEAG 290
              +      +++   +          +  + L     +                     
Sbjct: 448 RPAASVWSVPQVRDEFVRDVFASGLALDVETELVTRTGRRLWGLLSGIAFEFQGEEVLLS 507

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAI-----AIFDQNRYLQFHNRSFVELWEIDLAF 345
             +D+++     + L  T   L  +   +      +      +   NR+  + +    A 
Sbjct: 508 SVVDITRRREAEELLRRTRAFLDAVIDNVPSVLYVLEGDTGRVVLWNRAAEDCFATRRAD 567

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +    +  E+L         PE    +          +S    +      NG+     + 
Sbjct: 568 IGDR-TLAEVLG--------PETG--RALAGGDPGAMRSLGMEELVLPR-NGENAVFALQ 615

Query: 406 SNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            +P       R   I +  ++T       +     +         +E +A    + R
Sbjct: 616 RHPFEWSGDGRCRIICVANDITASRRAREELRQAKERAERADAAKTEFLATVSHEMR 672


>gi|78486252|ref|YP_392177.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira
           crunogena XCL-2]
 gi|78364538|gb|ABB42503.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira
           crunogena XCL-2]
          Length = 1118

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 115/643 (17%), Positives = 242/643 (37%), Gaps = 49/643 (7%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIV 232
             ++   + +        + FK   D  +  V   D+ G I+  N  + + +    + ++
Sbjct: 358 QRDVVFLSSETDNALQKTADFKTGLDFHNI-VSVTDKQGRIIEVNDMFCRISGYPRDELL 416

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETV-STLEHGNNKSYK--IVRVLNSFGE- 288
            Q     +  +  +   K M  + +    +   + +  ++G+    +  IV +L+  G+ 
Sbjct: 417 GQDHRKVNSGIHSKTFFKEMWQTISSGHAWTGEICNRAKNGDLYWVESSIVPILDEHGQP 476

Query: 289 ---AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF------VELW 339
                I  DV+       +L      L  +      ++ +      N +        +++
Sbjct: 477 QKYISIRTDVTHLKQTEQRLIEAQS-LAKMGY----WEAD----LINGALDWSDYIYDIF 527

Query: 340 EIDLAFLATNPSNDELLEFLRSAN-KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             D A  +  PS +   + +   + +L E    +     +  V             P+GQ
Sbjct: 528 GFDKAHFS--PSVEAFKKAIHPDDVELVEASEREASISGVHDVVHRI-------IRPDGQ 578

Query: 399 T--LHVIVTSNPRGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              +H +   + + G +       +++T   + E       +    +    + G   +  
Sbjct: 579 IRYVHELGQGHRKNGELIRLSGTVQDITDLKEAEAALKKSEQRLNLSQRFANIGTWDWNI 638

Query: 453 DGRIKLSNPAFRSLWKTE--ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                  +     L+  E  E  +S  + +  +     +   E+    +        +  
Sbjct: 639 KTNELFWSERISPLFGGEQAELEISYDSFLNAVHPDDRQKVVEAVTACIEQGTEYDIEHR 698

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                G++  + +               +    ++T    AE  L +  E   KAD+ K+
Sbjct: 699 VVWKDGSVRWMHEKGDTVIGQDGSPTNMLGVVQDITRRKEAEEHLIQALERAEKADKAKS 758

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+PL +IIGF+DLL    +  L  K+   V++IS S   LL L+N +L+L
Sbjct: 759 EFLSSMSHELRTPLNSIIGFSDLLS---MADLPEKEQHQVDHISESGHHLLALINQLLEL 815

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQ 689
           + ++ G ++L  + +VL D ++    ++     +  + ++            AD  +L Q
Sbjct: 816 SKIEQGEVELKMTDVVLEDTVHYCLSTVDPMAQKYLVELERPDWKSFDYHVYADELKLKQ 875

Query: 690 IFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAH 747
           +    LSNA+ ++     V+L A   + G    SV + G  IP+D   +VFN +      
Sbjct: 876 VMLNFLSNAIKYNRPDGKVMLAATLLETGKVRISVTDTGYGIPKDKQSNVFNSYDRLGHE 935

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                G G+GL+I +  + L GG +  SS +   +      P 
Sbjct: 936 SSTIEGTGIGLNITQQLVFLMGGDIGFSSQENEGSCFWVDFPL 978


>gi|308070734|ref|YP_003872339.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305860013|gb|ADM71801.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 556

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 119/258 (46%), Gaps = 10/258 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+ML         +    L    EA   A   K  F+  +S+E+R+P+  +IG  DLL  
Sbjct: 137 QSMLLHQKTQQLEKMNSELIAAKEAAEIAANAKTEFLAMMSHEIRTPMNGVIGMIDLLME 196

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L S Q +Y + I  S+  L+ ++NDILD   +++G M++      L   + EV  
Sbjct: 197 TE---LQSDQQEYADIIRRSADALVAVINDILDFTKLESGKMEVEEYPFDLVSCIKEVFS 253

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +++  N+ +    D ++      D  RL Q+   ++SNA+ F+ +G   +  + ++
Sbjct: 254 LFTVEVNRKNLELVYFLDEQMPPVLYGDMGRLRQVLINLVSNAVKFTDQGGVYVFASVKE 313

Query: 716 NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
             D      FSVK+ G  I     + +F  F         +  G GLGL+I ++ +N+ G
Sbjct: 314 QSDNGLTVEFSVKDTGIGIDSAKVERLFQPFSQLDSSMTRKYGGTGLGLAICKTLVNMMG 373

Query: 770 GHVSISSSDEGVTTINCR 787
           G + +  S E   T +  
Sbjct: 374 GDIRVDMSGEQGVTFHFT 391


>gi|172039202|ref|YP_001805703.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700656|gb|ACB53637.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 864

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 5/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L     A  KA+  K+ F+  +S+ELR+PL  I+G+  L+  S   SL+S     ++ 
Sbjct: 391 EELELAKIAAEKANHAKSEFLASMSHELRTPLNAILGYVQLMLRS--TSLSSDHRNNLQT 448

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ S   LL L+ND+L+++ ++AG + L  +   L  LL+E++  +  K     + +  I
Sbjct: 449 INDSGEHLLGLINDVLEMSKIEAGQIVLKETDFDLYHLLDELETLLQLKATIKQLSLSFI 508

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D  +  ++  D ++L Q+   I+ NA+ F+ KG  V +K   +     F+V++ G  I 
Sbjct: 509 RDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEKG-RVTVKVWCEGHRLFFAVEDTGQGIE 567

Query: 732 EDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++  + +F+ FV   A      G GLGL I   FINL GG + ++S     TT    I
Sbjct: 568 KEELEQLFSPFVQAKAGVNSGEGTGLGLPISSKFINLMGGKIMVNSVVTEGTTFTFNI 625


>gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
 gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
          Length = 578

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  ++G  +LL  S+   L+ KQ  YV+ +  S   LL ++NDIL
Sbjct: 197 KSQFLANMSHEIRTPMNGVLGMAELLLHSE---LDEKQKSYVKILHQSGESLLGIINDIL 253

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           +++ ++AG +++      L++      +          + +++  +  +    V D  RL
Sbjct: 254 NISKIEAGRLEIERIPFDLHETARGAVELYREVGRRKGVAVELQIEEDVPRCVVGDPSRL 313

Query: 688 LQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFV 743
            Q+   +++N + F+ KGS    V L     NG ++ F VK+ G  IP D    +F  F 
Sbjct: 314 RQVLINVVNNGLKFTDKGSVQVRVTLVEQYQNGQYVAFEVKDTGIGIPADCIGDIFGLFA 373

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                  R   G GLGL+I +  + L GG + + S     +T   
Sbjct: 374 QVDGSTTRKYGGTGLGLAIAKQLVELMGGAIGVESEPGQGSTFTF 418


>gi|219666355|ref|YP_002456790.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219536615|gb|ACL18354.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 582

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  L + N  L++  + K  F+  VS+ELR+PLT II F ++L   K    +S++    E
Sbjct: 332 QIQLEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFEDSSEEQILCE 391

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
               +S +LL+++N+ILDLA ++ G   L+  T+ L D++N V+  I      N+I +  
Sbjct: 392 I-KENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIHLTA 450

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSS 729
             +  +     D +++ +I   +  NA+ F+  G  V +    A D      +V+++G  
Sbjct: 451 RVERGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIG 510

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++    +F +F+       R+  G GLGL++ +    LHGG +S+ S     +T    
Sbjct: 511 ISKENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKGSTFIVL 570

Query: 788 IPSK 791
           +P +
Sbjct: 571 LPIE 574


>gi|262404766|ref|ZP_06081321.1| BarA sensory histidine kinase [Vibrio sp. RC586]
 gi|262349798|gb|EEY98936.1| BarA sensory histidine kinase [Vibrio sp. RC586]
          Length = 927

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/511 (21%), Positives = 207/511 (40%), Gaps = 70/511 (13%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF---HNRSFVELW---EIDLAF 345
           A+ +    +V   +++ +     L  +IA+FD N  L      + +F +L    +  + F
Sbjct: 60  ALRMQSRESVRRIISYAHRKNSKLVRSIAVFDGNHELFVTSNFHPNFEKLMYPKDKPIPF 119

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L+++  ++  L                            +    +   L NG        
Sbjct: 120 LSSSVIDENTL-------------------------ILRTPIVSERSLLENGDANP---- 150

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P  G I +  +L+       +     ++    +      V V    G +     AFR 
Sbjct: 151 TTPVMGYIAIELDLS-----SLRLQQYQEIFSAGL------VLVI---GILLSGVFAFRL 196

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +           TH++N+     R + +     +   +    D  +K +      LS+  
Sbjct: 197 MHDVTRPI----THMKNMVDRIRRGHLD---VRIEGKMHGELDALKKGINAMAVSLSEYH 249

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +E           +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL 
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLN 307

Query: 586 NIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +IGFT  +LKT     L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L    
Sbjct: 308 GVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIP 363

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
               D+L EV    AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ 
Sbjct: 364 FEFQDILEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTE 423

Query: 704 KGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
           +G+    V +++ RD+  D  F V++ G  I E     +F  F         +  G GLG
Sbjct: 424 RGNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLG 483

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L I +  ++  GG +S++S     +T    +
Sbjct: 484 LVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|258516894|ref|YP_003193116.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780599|gb|ACV64493.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1155

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 136/313 (43%), Gaps = 18/313 (5%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAE 552
               +       +  D    LQ   E L  +  E          Q         +   + 
Sbjct: 388 RQTNEELEEQARALRDSEAKLQVQQEELRQTNEELEEKNRYLEKQQNDIKKKNEELEYSR 447

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R + EK   L  + + K+ F+ ++S+ELR+PL +++  + LL  +K  +L  KQ ++   
Sbjct: 448 RMIEEKARDLELSGKYKSEFLANMSHELRTPLNSLLILSRLLYENKESNLTEKQVEFART 507

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I +S + LL L+NDILDL+ ++AG + L    + + DL   V++++     E  +   + 
Sbjct: 508 IHSSGSDLLELINDILDLSKIEAGKVDLFIQDLDIADLAGSVERNLRHMAEEKGLTFDIE 567

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------------NGD 718
               + S +  DRQRL QI   +LSNA+ F+S+GS + LK  R                 
Sbjct: 568 LSQSMPSIIRTDRQRLEQIIKNLLSNAIKFTSQGS-ICLKIGRPYSEAKLMRSDLDIRNT 626

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F+V + G  I  D  K +F  F         Q  G GLGLSI    +   GG + + S
Sbjct: 627 VAFTVSDTGIGIAADKMKLIFEPFQQADGTTSRQYGGTGLGLSISRELVRCLGGEIQLES 686

Query: 777 SDEGVTTINCRIP 789
            +   +T    +P
Sbjct: 687 REGYGSTFTIYLP 699


>gi|199597664|ref|ZP_03211092.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
 gi|199591471|gb|EDY99549.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
          Length = 636

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 150/406 (36%), Gaps = 45/406 (11%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   + +   + +    + H+++GV      G + + N    S   
Sbjct: 240 GQLAVAVNNLSVRVEEAQEASEAERRRLDSVLAHMTDGVIATDRRGNVIIINQTALSFLN 299

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T+   +  G  I  +      Y       DL         D  + L   L L     +++
Sbjct: 300 TKNEDV-IGVSILKLLNIAKDY----TLRDLLEHQTELLLDFSEQLDHDLILR----VDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 351 SLIQRETGFISGLVAVLHDVTEQQ-----------KIDRDRKEFVSNVSHELRTPLTSVR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             Q++      +  ++ ++ND+L L+ +D+G  K N  T+ LN
Sbjct: 400 SYIEALSDGAWKD-PKLAPQFLNVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLN 458

Query: 649 DLLNEVKQSI---------------------ATKMHENNIRIKVISDGKLGSFVADRQRL 687
           +  N V                              +    IK     +      D  + 
Sbjct: 459 EFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQKKRYSIKREITHEDLWVEIDTDKF 518

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
           +Q+   I++NA+ +S  G  +  +  + +   I S+ + G  IP      +F+RF     
Sbjct: 519 MQVIDNIMNNAIKYSPDGGVITARLFQMHDHVILSISDQGLGIPRQDLGKIFDRFYRVDK 578

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++ G GLGL+I +  +    G + + S +   +T    +P +
Sbjct: 579 ARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGRGSTFYISLPYE 624


>gi|239904905|ref|YP_002951643.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794768|dbj|BAH73757.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 823

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 154/384 (40%), Gaps = 41/384 (10%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D   + N  +      ID+L++G+ V    GR  L NPA  +++                
Sbjct: 243 DTTRELNDSLAHIQAIIDNLADGLLVVDDAGRATLHNPALLAMFGLT------------- 289

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               +  +         AA+  S   ++   +  + L                + + T  
Sbjct: 290 GTDPAGRWVRDAFPPAMAALAASCLSDKACPETEVALSGGGT----------GKVVATSF 339

Query: 544 NVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +    R A   L       ++ D +K  F+  VS+ELR+PLT+++GF  +++   L  +
Sbjct: 340 RLPGQARTAVILLVRDVTVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFLELV 399

Query: 603 NS--------------KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
                           +  + ++ I A    L  LV+D+LD+A +++G  + +   + L 
Sbjct: 400 VPALPPGDARVARGAGQIRENLDIIVAEGERLTELVDDVLDIAKMESGRCEWDMEPVSLA 459

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            + +   ++ A       + +       L + +ADR RL+Q+   ++ NA+ F++ G  V
Sbjct: 460 AVADHAVKAAAPLAARKGLALTADIASDLPAVMADRDRLVQVLLNLIGNAVKFTTSG-WV 518

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            L A   +G+   +V ++G+ I     +++F +F           +G GLGL I    + 
Sbjct: 519 RLSAVAVDGEVRVAVADSGAGIAAKDLETIFEKFKQAGDTLTEKPKGTGLGLPICRQIVE 578

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
            HGG +   S     +     +P+
Sbjct: 579 RHGGRIWAESVPGQGSVFRFILPA 602



 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 22/139 (15%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D ++E  +ND L H   I+ NL   + + D       HN + + ++ +      T+P+  
Sbjct: 243 DTTRE--LNDSLAHIQAIIDNLADGLLVVDDAGRATLHNPALLAMFGL----TGTDPAGR 296

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NP 408
            + +    A                 S        +    L  G T  V+ TS       
Sbjct: 297 WVRDAFPPAM-----------AALAASCLSDKACPETEVALSGGGTGKVVATSFRLPGQA 345

Query: 409 RGGTIWMFENLTVQVDLET 427
           R   I +  ++TV+ +++ 
Sbjct: 346 RTAVILLVRDVTVEKEVDR 364


>gi|229149775|ref|ZP_04278005.1| hypothetical protein bcere0011_13330 [Bacillus cereus m1550]
 gi|228633806|gb|EEK90405.1| hypothetical protein bcere0011_13330 [Bacillus cereus m1550]
          Length = 591

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|298492081|ref|YP_003722258.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
 gi|298233999|gb|ADI65135.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
          Length = 690

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 24/294 (8%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           G D    I  +FD     +Q    +L   +++  II     +T                L
Sbjct: 235 GSDELVQISVAFDHMASKIQENTLILQQELIKREIIEAKLKET-------------NEQL 281

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           +  N  L    + K+ F+ ++S+E+R+P+  +I   +LL    + +L+ +Q   V+ I  
Sbjct: 282 SISNIELASLTKAKSEFLSNMSHEIRTPMNGVICMAELLS---MKNLSEEQQDIVQTIRD 338

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   LL ++NDILD + +++G ++L     +L D++  V + ++T+    NI ++   + 
Sbjct: 339 SGNALLVIINDILDFSKIESGNLQLEEHRFILRDIIKSVFKLLSTQAATKNIHLEYSINP 398

Query: 676 KLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSS 729
            + +  + D  RL Q+   ++SNA+ F+  G   + + A +   D     + S+K+ G  
Sbjct: 399 DVPTNILGDATRLRQVLLNLISNAIKFTEHGHVSIAVLANKHQEDQKIELMISIKDTGIG 458

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           I  D    +F  F         +  G GLGL+I +S +NL GG + + S     
Sbjct: 459 IEHDRLNQLFQPFTQADTSISRKYGGTGLGLAISKSLVNLMGGKIWVESLGNIG 512


>gi|153824523|ref|ZP_01977190.1| sensor protein TorS [Vibrio cholerae MZO-2]
 gi|149742077|gb|EDM56106.1| sensor protein TorS [Vibrio cholerae MZO-2]
          Length = 984

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKGITLTYHIDDDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRV 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLALDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFWFTLPL 691


>gi|307155195|ref|YP_003890579.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985423|gb|ADN17304.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 404

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 2/244 (0%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R +  +NE L++   +K+ F+  +S+ELR+P+  I+GF+ +L       L   Q+  
Sbjct: 158 RQRRQIELQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRKYPEPLTCAQTDL 217

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  +S  LL L+ND+L  + ++AG + L+ + + L  L     + + +     N+ +
Sbjct: 218 VQRIFDNSKNLLTLLNDVLHFSKIEAGKLLLHPTELDLKQLTVLTTEELRSLAVSKNLSL 277

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  + +    V D+  L +I   +LSNA+ F+  G   +            +VK+ G  
Sbjct: 278 QIKVELENPQIVNDQSCLRRILVNLLSNAIKFTESGGVWVNVWEMRPDWLAIAVKDTGIG 337

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I E+  + +F  F         +  G GLGL+I ES   +  G +S++S     +     
Sbjct: 338 IAEEQLEHIFEVFRQADQTLTRKYGGTGLGLAISESLTKMMQGKISVTSELGKGSIFQIE 397

Query: 788 IPSK 791
            P K
Sbjct: 398 FPRK 401


>gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 1238

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 134/300 (44%), Gaps = 11/300 (3%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNAQTMLTFVNVT--DSVR 550
           G+ +   I TS  +   +L  T+  +   SD  L           T++   N    +  R
Sbjct: 484 GFAISRRIGTSISNPLSNLTRTMARIRGGSDLSLRVRHQGSDEVATLIAGFNTMLDEIER 543

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +  L     A   A+  K+ F+  +S+E+R+P+  ++G T+LL+ ++   L +KQ  +V
Sbjct: 544 RDVELQAAIAAAEAANSAKSEFLARMSHEIRTPMNGVLGMTELLQRTR---LTAKQRSFV 600

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  S   LL +++DILD + ++AG + L      L  LL++V   +        + ++
Sbjct: 601 DTVYRSGQTLLTIIDDILDFSKIEAGKLMLERIEFNLYQLLDDVVSLLEPTAARKGLALR 660

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               D        D  RL QI + ++ NA+ F+ +G   +  A  D+G  +F++ ++G  
Sbjct: 661 FRRQDPVPEWVRGDPVRLRQILTNLVGNAIKFTERGQVELAVAYSDHGLVVFTIADSGIG 720

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D+   +F  F         +  G GLGL I      + GG +++ S+    +     
Sbjct: 721 IAPDVSAQLFKPFQQADSSTARKYGGTGLGLVISRQLAEMMGGTLTVESAPGRGSVFTVT 780


>gi|319784578|ref|YP_004144054.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170466|gb|ADV14004.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 577

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/358 (23%), Positives = 157/358 (43%), Gaps = 8/358 (2%)

Query: 440 IDHLSEGVAV-FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           ++ + + V +     G +  ++P  R+L K     LS       +  +    Y  +    
Sbjct: 186 LEDIIDAVVLRVARHGEVLDASPKARTLLKLPPELLSGNGLFDRVHLSDRVSYLSAMADM 245

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VNVTDSVRAERA 554
              A+    +   +  Q    L +D+   +S+  +   +    F        +  R    
Sbjct: 246 RDGALSRRLELRIRLPQNGNGLTADNYRPFSLDLVRGEEQGDVFTFVLRQNDEIARLRED 305

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613
           L   NEA   A+  K  F+  VS+ELR+PL  IIGF+D+L     G+  + +Q +YV  +
Sbjct: 306 LAAANEAAASAEVAKGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLV 365

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL +V  ILD++ +++G+           + ++  +  +  +    NI ++   
Sbjct: 366 RDSGQHLLAVVTSILDVSRIESGVYATEPEPFRFAEAVDMCQSMMQLQAQAKNIDLQAQI 425

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
               G   AD++ + Q+   ++SNA+ F+  G  V++ A R      F V++ G  I E+
Sbjct: 426 APDAGDINADQRAVQQMLINLVSNAIKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGIAEE 485

Query: 734 MCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++   F  + N +  +  G GLGLS+V+  + LH G +SI S     TT+   +P
Sbjct: 486 DFANLGKPFMQIQNDYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 543


>gi|325105301|ref|YP_004274955.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324974149|gb|ADY53133.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1198

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 133/244 (54%), Gaps = 6/244 (2%)

Query: 551 AERALTEKN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER L  +   E L  + + K+ F+ ++S+ELR+PL +I+  + L+  +   +LN +Q +
Sbjct: 506 AERNLEIQKKAEELALSTKYKSEFLANMSHELRTPLNSILLLSRLMAENTEHNLNEEQIE 565

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               I +S   LL L+++ILDL+ ++AG MKL +  I ++ +++ +K      + E N+ 
Sbjct: 566 SANVIQSSGASLLELIDEILDLSKIEAGKMKLEFQKIEISGIVSALKALFLPIIKEKNLD 625

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +     +G  +  D+ R+ Q+   ++SNA+ F+S+GS + L+ +R+N + +F+VK+ G
Sbjct: 626 FDIKIGADVGQIIETDKMRVEQVMKNLMSNAIKFTSRGS-IGLQISRENNNILFAVKDTG 684

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +  K +F  F       +R   G GLGLSI      L GG + + S +   +   
Sbjct: 685 IGIPAEQQKIIFEAFQQADGSTRRKFGGTGLGLSISREIAKLLGGEIRLLSKESEGSIFT 744

Query: 786 CRIP 789
             +P
Sbjct: 745 LVVP 748


>gi|298244388|ref|ZP_06968194.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297551869|gb|EFH85734.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1349

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/651 (17%), Positives = 232/651 (35%), Gaps = 70/651 (10%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            G  +++ +     ++L      ++VL +++  LVW     G + + N  +       G  
Sbjct: 732  GTITDIEDQKRIEQQLKESEENWRVLAETVPQLVWASSPDGRVEYWNQRWY---TYTGSA 788

Query: 233  FQKAIGESRKLFKEEIKKRMISS-----SALEKNFCE--TVSTLEHGNNKSYKIV----- 280
             + A+G     F    + +             + +     +   + G  + + +      
Sbjct: 789  PEHALGHEWSQFLHPDEYQHTLMVWHHVLETGRPYEIEYRLKEGQTGAYRWFLVRGMPVR 848

Query: 281  -RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSF 335
                      G   D+  +     ++  + +    L   +  F          +++N+ +
Sbjct: 849  DDTSQIVKWFGTCTDIEDQKQAEQKIKESEQYWRVLAETVPQFVWIGQPGGSKEYYNQRW 908

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             +        L      D  LEFL          +++  +       ++ E ++    L 
Sbjct: 909  FDYAHAAFEQLQG----DGWLEFLH-------PDDYERTQALGRHARETGEPYEIENRLK 957

Query: 396  NGQT---LHVIVTSNP---RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            +G+T      +    P     G I        ++  Q   E       +     ++    
Sbjct: 958  DGKTGTYRWFLTRGVPVRDDTGQIVKWFGTVTDIDEQKRTEEALRQSQERVNILMNSSII 1017

Query: 446  GVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            G+  F  +G +I  +N  +  +     + L     I  +  T   Y   +        + 
Sbjct: 1018 GI--FLAEGEQIVDANDTYLRMTGYTRDDLR-ARSISWMRMTPPEYLARTQQARQELVVQ 1074

Query: 505  ---TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
               T ++ E     G+   +   V+     PL     +L          A + L      
Sbjct: 1075 QYGTPYEKEYVCKDGSRLPVVVGVVALRRDPLHTIGFVLDNS-------ARKEL------ 1121

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                ++ K+ F+   S+ELR+PL  +   T L++         + +  +  +      L 
Sbjct: 1122 ----EQRKDDFISMASHELRNPLAALKMQTQLVQKRLERQSLHEAATALSRVEGPVKQLE 1177

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             L+ ++LD++ + AG ++    T+ L+ LL+EV  ++      + I ++        S V
Sbjct: 1178 RLIGELLDVSKIQAGKLEYVRETVDLDALLHEVADTMQQLSTTHIIAVR---GAVPHSLV 1234

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
             D+ RL Q+F  ++SNA+ +S    TV +         I  V ++G  IP + C  +F R
Sbjct: 1235 GDKDRLGQVFINLISNAIKYSPGAETVEMDLDASPEAAIIGVHDHGLGIPREQCDKIFER 1294

Query: 742  FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F   A   Q+   G+G+GL IV   +  HGG +++ S+    +T    +P 
Sbjct: 1295 FYRAAGPKQKAIPGLGMGLYIVAEIVKRHGGTITVDSTVGEGSTFTVTLPL 1345



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/534 (10%), Positives = 164/534 (30%), Gaps = 65/534 (12%)

Query: 65  ICDQLSK-YHSLLTENNCLTIVWDGKDE--TPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121
              +  +  H+L+       +VW G+ +        +      +   +      + W++ 
Sbjct: 250 ARKRAERDIHALIDAIPQ--LVWTGRPDGYVDSYNQRWRDYTGLTTEEAQG---DGWMQC 304

Query: 122 HHYIKLSKATE---KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
            H     +  E   +  + G+ ++     ++    +    +  +  +       G   + 
Sbjct: 305 THPEDRQRVLETWQRAVQTGEPYETEQRLRHGTTGEYRWFLMQATPY---TDAQGTILKY 361

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
             T           +  + L D++  LVW     G   + N  +    +   + F++  G
Sbjct: 362 VGTCTDIHDKKRAEAELRALIDAIPQLVWMLGPDGSSEYGNQRW---CDYTNMSFEQYQG 418

Query: 239 ES--RKLFKEEIKKRM---ISSSALEKNFCE--TVSTLEHGNNKSY--KIVRVLNSFGEA 289
           +   + +  ++ +  +     +    + F     +   + G  + +  + + V +  G+ 
Sbjct: 419 DGWLQAIHPDDYQHTLMLWRHALETGEPFEIEYRLKNGQTGGYRWFLARALPVRDEAGQI 478

Query: 290 ----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
               G   D+ ++  + D +     ++  +   + I   +   ++ N  + E        
Sbjct: 479 LKWFGTCTDIHEKKQIEDDIRA---LVDAIPQFVWIMHPDGSAEYANPRWCEYTG----M 531

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHV 402
            + +   D  L+ +   ++   Q     W+    S  ++   ++    L N  T      
Sbjct: 532 TSQHYQGDGWLQAIHPDDR---QRVLAGWQ----SAVQAGRPYEGEQRLRNSTTGDYRWF 584

Query: 403 IVTSNP----RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +    P    +G  +  F    ++  Q   E +     +      + + + V    P+G+
Sbjct: 585 LARGAPFKDAQGTILKYFGTTTDIDEQKQAEQRSKASEENWRVLAETVPQMVWTTRPNGQ 644

Query: 456 IKLSNPAFRSLWKTEENRLS--PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            +  N  +          +       +  I               L    +   ++  ++
Sbjct: 645 HEYVNQRWCDYMGVTVEHMQSDRWAPLPFIHPDDREGTRALWQHALDTGGMYEHEERFRN 704

Query: 514 LQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEAL 562
            Q      +        +P+ +      +   T  ++ D  R E+ L E  E  
Sbjct: 705 SQ----TGAYRWFLARAMPVRDGAGQILKWFGTITDIEDQKRIEQQLKESEENW 754



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 65/555 (11%), Positives = 147/555 (26%), Gaps = 44/555 (7%)

Query: 38   IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD-GKDETPEII 96
             +   L +R       K   T + + E         +L+        VW    D + E  
Sbjct: 464  FLARALPVRDEAGQILKWFGTCTDIHEKKQIEDDIRALVDAIPQ--FVWIMHPDGSAEYA 521

Query: 97   G-QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRK--------EGQSFDLVAET 147
              +  +   +          + WL+  H     +     +         EG+     + T
Sbjct: 522  NPRWCEYTGMTSQHYQG---DGWLQAIHPDDRQRVLAGWQSAVQAGRPYEGEQRLRNSTT 578

Query: 148  QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
             +       G      A   IL   G  +++ E     ++       ++VL +++  +VW
Sbjct: 579  GDYRWFLARGAPF-KDAQGTILKYFGTTTDIDEQKQAEQRSKASEENWRVLAETVPQMVW 637

Query: 208  HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS------SSALEKN 261
                 G   + N  +           Q            + ++   +       +     
Sbjct: 638  TTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLPFIHPDDREGTRALWQHALDTGGMYE 697

Query: 262  FCETVSTLEHGNNKSYKIVRVLNSFGEA------GIAIDVSKEITVNDQLTHTYEILHNL 315
              E     + G  + +    +    G        G   D+  +  +  QL  + E    L
Sbjct: 698  HEERFRNSQTGAYRWFLARAMPVRDGAGQILKWFGTITDIEDQKRIEQQLKESEENWRVL 757

Query: 316  TVAIAIF----DQNRYLQFHNRSFVELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLN 370
               +         +  +++ N+ +           L    S     +  +    +   + 
Sbjct: 758  AETVPQLVWASSPDGRVEYWNQRWYTYTGSAPEHALGHEWSQFLHPDEYQHTLMVWHHVL 817

Query: 371  WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
                   I    K  +T    W L  G  +    +            ++  Q   E K  
Sbjct: 818  ETGRPYEIEYRLKEGQTGAYRWFLVRGMPVRDDTSQ--IVKWFGTCTDIEDQKQAEQKIK 875

Query: 431  TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
               +      + + + V +  P G  +  N  +         +L     +  +      Y
Sbjct: 876  ESEQYWRVLAETVPQFVWIGQPGGSKEYYNQRWFDYAHAAFEQLQGDGWLEFLHP--DDY 933

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNV 545
                            ++ E +   G  +  +        +P+ +      +   T  ++
Sbjct: 934  ERTQALGRHARETGEPYEIENRLKDG--KTGTYRWFLTRGVPVRDDTGQIVKWFGTVTDI 991

Query: 546  TDSVRAERALTEKNE 560
             +  R E AL +  E
Sbjct: 992  DEQKRTEEALRQSQE 1006



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 105/393 (26%), Gaps = 33/393 (8%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-EGIVFQKAIGESRK-LFK 245
                     + + L   ++  D    I++AN S +         +   +       L  
Sbjct: 12  ALTSRDTLLSILERLPDALFFVDDTARIVYANTSAQTMLGASREALLGNSFWRGVPQLVS 71

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
             + + +  +   ++       +                  G       +       +  
Sbjct: 72  PSLYQAVRKTRQTQEPTDVEYHSPV--TRTWLHAHLAPTVGGLTLQFHQMRAPTPHQETF 129

Query: 306 THTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                +    L  L   I I      +   N   ++  ++    +   P  +        
Sbjct: 130 PRGERLCIDDLDGLHTRIGILTPEGIVLDINAVPLDDAQVPREEVIGKPLAETPWWSFAP 189

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----GGTIWMF 416
           A++   +             +++    ++   L    +   ++T +          +   
Sbjct: 190 ASQEQLRAAIARANAGETVCFEALVRPREGMLL----SFESVITPHMDADHHVEYLVIAG 245

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T +   E   + L       ID + + V    PDG +   N  +R            
Sbjct: 246 IDVTARKRAERDIHAL-------IDAIPQLVWTGRPDGYVDSYNQRWRDYTGLTTEEAQG 298

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              ++       +   E+  W         ++ E++   GT              P  +A
Sbjct: 299 DGWMQCTHPEDRQRVLET--WQRAVQTGEPYETEQRLRHGT--TGEYRWFLMQATPYTDA 354

Query: 537 QT-----MLTFVNVTDSVRAERALTEKNEALRK 564
           Q      + T  ++ D  RAE  L    +A+ +
Sbjct: 355 QGTILKYVGTCTDIHDKKRAEAELRALIDAIPQ 387


>gi|153806065|ref|ZP_01958733.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185]
 gi|149130742|gb|EDM21948.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185]
          Length = 391

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 184/380 (48%), Gaps = 23/380 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K      V    + ++   + +   D ++  +N   ++  +        G  ++   A 
Sbjct: 10  RKLEHTNHVASAILKNVHAFILLINNDFKVLKTNYYQQTGTRKGPEEKRVGDLLQCCNAL 69

Query: 487 CSRY----YNESDGWDLFAAIITSFDDER--KSLQGTLELLS--------DSVLEYSIIP 532
            +      +       +  AI  +F+  R   +L+ TL +++        ++V+  S   
Sbjct: 70  SAEGGCGTHVYCGSCPIRQAIRQAFEQRRGFTNLEATLNMVTSENQTVACEAVISGSYFL 129

Query: 533 LPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           L   + M+ T  ++T   + ER L    E    AD  K++F+ ++S+E+R+PL  I GF 
Sbjct: 130 LNEEENMVLTVHDITHLKQVERELKVAKEKAENADIAKSAFLANMSHEIRTPLNAITGFA 189

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +++      +   +++QY E I  ++ +L+ LVNDILD++ ++AG ++  YST+ +N LL
Sbjct: 190 EVM---GSANTEEEKTQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVYSTVDINLLL 246

Query: 652 NEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++++    ++++   ++++I++  L       DR R+ Q+ S  + NA+ F+ +G  + 
Sbjct: 247 SDLQRLFQMRINDAGGKVQIIAEPSLSSCLIQTDRNRVAQVISNFVGNAIKFTREG-NIR 305

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           +     + +  F VK+ G+ IP +   +VF RFV       ++G GLGLSI ++ +    
Sbjct: 306 IGYEAKDTELYFYVKDTGTGIPAEKLSNVFGRFVKL--NKDQKGAGLGLSISQTIVGKLS 363

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S +   +T    +P
Sbjct: 364 GQIGADSIEGEGSTFWFTLP 383


>gi|153954091|ref|YP_001394856.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219854704|ref|YP_002471826.1| hypothetical protein CKR_1361 [Clostridium kluyveri NBRC 12016]
 gi|146346972|gb|EDK33508.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219568428|dbj|BAH06412.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 437

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 175/381 (45%), Gaps = 31/381 (8%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
             + I +L +   V+  +G I L N   R L+     +L+    I   A +C +YY+  +
Sbjct: 23  LEDIIQNLPDAFFVYNKEGYIVLLNAMARKLYP----QLNAQKTIEE-AHSCLQYYDLDN 77

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSD----SVLEYSIIPLPNAQ-----TMLTFVNVT 546
              L     T    + K ++    ++       ++E +  P+ + +      + +  +V+
Sbjct: 78  NIILPDNFPTRRAFKGKKVKNERVVIKRCHKIQIIEVNATPIFDEENNLVYVVASHHDVS 137

Query: 547 DSVRAERALTEK-----------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           + ++ +  +  +           NE L +A + K  F   +++E ++P++ I      + 
Sbjct: 138 ELIKNQEEIKAQQEKLLNAEKSRNEILEEAIKSKEEFFYLMTHEFKTPISVINLALQAID 197

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 +  K ++Y+  I  +    L LVN++LD+A +D+G +K+N S   +  ++  + 
Sbjct: 198 LMYKKEITEKVNKYLNTIKQNVNRQLRLVNNLLDIARIDSGHLKMNKSCFSIIHVIEAIV 257

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
            S+     + N+ +K  ++    +  +D ++L +I   +LSNA+ F+  G ++I+  +  
Sbjct: 258 NSVQLYAKQKNVILKFNTNLSKKNIYSDEEKLERILLNLLSNALKFTPSGKSIIVTLSTK 317

Query: 714 --RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             ++      SV++ G  IP D  K++F RF  V ++   Q  G GLGL +V+  +N   
Sbjct: 318 KYKNGEMISISVQDEGMGIPLDKQKTIFERFGQVDSSLSDQAEGTGLGLHLVKLLVNSLD 377

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S+    +     +PS
Sbjct: 378 GEILLNSTVGEGSIFTVLLPS 398


>gi|78046084|ref|YP_362259.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034514|emb|CAJ22159.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 769

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 10/250 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q 
Sbjct: 90  HGELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSVDQR 146

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +
Sbjct: 147 DMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQL 206

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFS 722
           R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      F 
Sbjct: 207 RLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQ 266

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S    
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 781 VTTINCRIPS 790
            +T    IP 
Sbjct: 327 GSTFWFEIPL 336


>gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1406

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 914  QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 973

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L+ KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 974  NADANLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEA 1033

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +      E  + + V    +L  +   D QRLLQ+   +LSNA+ F+  GS  ++++ AR
Sbjct: 1034 TFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPAR 1093

Query: 715  DN--------------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
            D+                    G   FSV + G  I     + +F  F         +  
Sbjct: 1094 DDVPQAIREQLLETGSLTDPDGGLIAFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYG 1153

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +   S     +T    +P 
Sbjct: 1154 GTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1191


>gi|226310516|ref|YP_002770410.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093464|dbj|BAH41906.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 478

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 4/241 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             + L +  +     ++++N F+ +VS+ELR+PLT I GF + L+   +    ++Q  Y 
Sbjct: 234 MAQKLEKVEQERHHLEQVRNDFLANVSHELRTPLTAIQGFLEALQDGLVEEEEARQKYYA 293

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +   +  +  LV+D++DL  ++   + L    + + D++N V  S   +  E  + + 
Sbjct: 294 -VMYTETMQVNRLVDDLMDLMKLENNEVNLVKFPVDVADVMNRVAFSFHQEAEEKGLHMG 352

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V  + +L    AD+ R+ QI   ++ NA+ F+S G  + ++A+ D       V + G  I
Sbjct: 353 VEVEDELPRIYADKDRIAQILKNLVKNALKFTSAGE-IRMRASLDGEYVQIQVIDTGMGI 411

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             D    ++ RF        +  +G GLGL+IV+  + LH G   + SS    +T    +
Sbjct: 412 AADDLDRIWERFFKVDRGRSKNNKGTGLGLAIVKELVELHDGKCRVESSPGKGSTFTIWL 471

Query: 789 P 789
           P
Sbjct: 472 P 472


>gi|225567986|ref|ZP_03777011.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM
           15053]
 gi|225163274|gb|EEG75893.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM
           15053]
          Length = 1194

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/455 (22%), Positives = 179/455 (39%), Gaps = 41/455 (9%)

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRGGTIWM 415
               KL E L      E+ ++  K+           +G             NP  G + M
Sbjct: 459 HYGQKLRETLKRDKVLED-YAAGKADYNFSFLCRRKDGTAFWSGSNFHTCLNPETGDVMM 517

Query: 416 F---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           F   +++T Q   +     + K+  + I  +     +     R+      F   WK  + 
Sbjct: 518 FFYTQDITEQRLQDQLLKKITKLDYDLITEID----ITTSTYRLV----GFSDEWK--QA 567

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAI----ITSFDDERKSLQGTLELLSDS---V 525
            L  G   + I        NE         +    + S    + S    LEL  D    V
Sbjct: 568 VLQQGDFQQEIRRIAESRMNEEARKVFLEKLDFEYMKSCLARQNSYTFILELTEDRGTRV 627

Query: 526 LEYSIIPLPN--AQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYE 579
             + +  +     +  +T+ +VTD VR E+     L     A  +A+  K+ F+  +S+E
Sbjct: 628 KRFQVFYINEELGRVCMTWSDVTDVVRQEQRQKEELAAALVAAEQANVAKSDFLSRMSHE 687

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIG + +   S     + +    +  I  SS  LL+L+NDILD++ +++G M 
Sbjct: 688 IRTPMNAIIGMSTIAAQSIGD--DEQIEDCISKIGISSRFLLSLINDILDMSRIESGKML 745

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNA 698
           L    I   + LN +     ++    N+  + I D  L   +V D  +L Q+   ILSNA
Sbjct: 746 LKSERIPTEEFLNGINSICYSQAAVKNVDYECIIDPVLADYYVGDAMKLQQVLINILSNA 805

Query: 699 MDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--R 751
           + F+ +G  V   AA       +    F V + G  + ED    +F  F   +       
Sbjct: 806 IKFTGEGGKVTFSAAERRKTKTDAVLRFIVNDTGVGMNEDFLPHIFEPFSQESTGTTALY 865

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            G GLGL+I ++ ++L  G +++ S     T    
Sbjct: 866 GGTGLGLAISKNIVDLMDGKITVRSIKGIGTEFTV 900


>gi|72382751|ref|YP_292106.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL2A]
 gi|72002601|gb|AAZ58403.1| multi-sensor signal transduction histidine kinase [Prochlorococcus
           marinus str. NATL2A]
          Length = 689

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 155/393 (39%), Gaps = 46/393 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G I L NP  R L++ E   L     +  +  +
Sbjct: 291 EELKAAQVKQQSLIATMADGALLLDEQGNIVLVNPTARRLFRWEGRNLEGQNLLNQLPDS 350

Query: 487 CSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             +            +++ +F   DD R +L+     L   ++  S+            V
Sbjct: 351 LVKELETP-----ITSLLNNFGDSDDLRCNLEEPPRTL--RIVLKSVRDTTGENIKGIAV 403

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            + D  R             + +  +  F+ +VS+ELR+PL NI  + + L         
Sbjct: 404 TIQDLTR-----------EVQLNAAQKRFISNVSHELRTPLFNIKSYVETLYDLGEQLTK 452

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G   +    + + + + +  ++      
Sbjct: 453 DEQKEFLGVANSETDRLTRLVNDVLDLSKLESGR-TIQLEALSIKEAMEQTLRNYKLNAE 511

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           E N+++ +  +  L   + +   LLQ+F  ++ NA+ FS +G T+ LKA           
Sbjct: 512 EKNVKLILNVENNLTFVLGNWDMLLQVFDNLVGNALKFSQEGGTINLKAYTWPDICVASP 571

Query: 718 -----------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLS 759
                                 V + G  I E   + +F RF           G GLGLS
Sbjct: 572 VDLDNKAPHCEILSPMPKIRVEVSDTGYGISEIDQQRIFERFYRVEDSVHTEVGTGLGLS 631

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           IV+  ++ HG  + ++S     TT    +P ++
Sbjct: 632 IVKGIVDKHGSEIRMASEPNTGTTFWFELPLED 664



 Score = 41.5 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 47/146 (32%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D+   +   N +   L+  +   L      +
Sbjct: 286 DAANIEELKAAQVKQQSLIATMADGALLLDEQGNIVLVNPTARRLFRWEGRNLEGQNLLN 345

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           +L + L    + P          ++ + +  S+  +     P  +TL +++ S       
Sbjct: 346 QLPDSLVKELETP--------ITSLLNNFGDSDDLRCNLEEP-PRTLRIVLKSVRDTTGE 396

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V L       +
Sbjct: 397 NIKGIAVTIQDLTREVQLNAAQKRFI 422


>gi|17231253|ref|NP_487801.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132895|dbj|BAB75460.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1550

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 11/251 (4%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R  + L         A   K++F+ ++S+E+R+P+  ++G T L+  +    LN +Q  +
Sbjct: 872  RQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNAVLGMTGLMLETL---LNQEQRDF 928

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +E I  S   LL L+N+ILDL+ ++AG M L      L+  + EV   +A + H   + I
Sbjct: 929  METIRISGDALLTLINEILDLSKLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSKGLEI 988

Query: 670  K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD---FIFSVK 724
              +I          D  RL QI   ++ NA+ F+S G  V  ++   +        F+V 
Sbjct: 989  AALIYRHVPIQLQGDASRLRQILMNLIGNAIKFTSFGEVVMRVELRSETPTTAIIHFAVT 1048

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            ++G  I  +    +F  F        R   G GLGL+I +  + L GG + + S     +
Sbjct: 1049 DSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGKGS 1108

Query: 783  TINCRIP-SKE 792
                 IP +K+
Sbjct: 1109 KFWFEIPFAKQ 1119



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 6/150 (4%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            ++  +  +  +E   N         +D +S  V V    GRI   N A   +     + 
Sbjct: 380 LIYCEVIARQSMENILNEERNFISAVLDTVSALVIVLDSQGRIVRFNQACEVITGYSFDE 439

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +  G H  N+        +  + +  F A  T    +        +  S  ++ +S   L
Sbjct: 440 VR-GRHFWNLFLLPEDVESSKEFFAKFPADPTVPSVQESENYWVTKDGSRRLIAWSRTIL 498

Query: 534 PNAQT-----MLTFVNVTDSVRAERALTEK 558
            N +      + T +++T+  RA++ LT +
Sbjct: 499 QNHEGSVEYIIGTGIDITERKRADKHLTIQ 528


>gi|323499989|ref|ZP_08104945.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
 gi|323314955|gb|EGA68010.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 124/243 (51%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT+    L + Q+ Y++ 
Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTT----LTNSQTDYLQT 330

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + + + 
Sbjct: 331 IEKSAKNLLNIINDILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLK 390

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNG 727
            D K+ +  V D  R+ Q+ + ++ N++ F+ +G+  + ++      D +   F V++ G
Sbjct: 391 IDPKIPAGLVGDSLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQKDDVVELQFMVRDTG 450

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 510

Query: 786 CRI 788
             +
Sbjct: 511 FTL 513


>gi|228920286|ref|ZP_04083634.1| hypothetical protein bthur0011_13020 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839485|gb|EEM84778.1| hypothetical protein bthur0011_13020 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 591

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|17231003|ref|NP_487551.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17132644|dbj|BAB75210.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 619

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 165/394 (41%), Gaps = 29/394 (7%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   ++ L    ++G  +   + ++ L NP  R
Sbjct: 216 GELILNFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQVILVNPTAR 275

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++  E      G+++ +      +       +++ A    S +      + TL   S+ 
Sbjct: 276 HIFGWEGADDVVGSNVLHHLPPAVQMEITRPLYEMAAGECDSAE-----FRLTLNQPSNR 330

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +   +  + N Q         +S++      +      + +E K+ F+ +VS+ELR+PL
Sbjct: 331 TIRILLTTVLNLQ--------RESIKGIAITVQDITREVELNEAKSQFISNVSHELRTPL 382

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  F + L          ++ ++++ ++  +  L  LVND+LDL+ +++G    ++  
Sbjct: 383 FNIKSFIETLHDYGEDLSLEERQEFLQTVNHETDRLTRLVNDVLDLSKLESGR-SYSFDG 441

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L   + +  ++      +  I +       L   + +   LLQ+ + ++ NA+ F+S 
Sbjct: 442 VDLAQAIEQTLRTYQLNARDKGIELIQDVAPGLPLVLGNYDLLLQVLANLVGNALKFTSS 501

Query: 705 GSTVILKAARDN---------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGV 754
           G  + ++    N               V + G  I ++  +++F+RF    +R     G 
Sbjct: 502 GGKIAIRTYVLNTKSNSPNQPAQVRIEVSDTGIGIAQEDQQAIFDRFFRVENRVHTLEGT 561

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGLSIV + +  H   V++ S     TT    +
Sbjct: 562 GLGLSIVRNIVERHRSRVNLVSEVGVGTTFWFDL 595


>gi|228951953|ref|ZP_04114051.1| hypothetical protein bthur0006_13670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229069129|ref|ZP_04202421.1| hypothetical protein bcere0025_13360 [Bacillus cereus F65185]
 gi|229078759|ref|ZP_04211313.1| hypothetical protein bcere0023_14220 [Bacillus cereus Rock4-2]
 gi|228704632|gb|EEL57064.1| hypothetical protein bcere0023_14220 [Bacillus cereus Rock4-2]
 gi|228714074|gb|EEL65957.1| hypothetical protein bcere0025_13360 [Bacillus cereus F65185]
 gi|228807876|gb|EEM54397.1| hypothetical protein bthur0006_13670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 591

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V    ++  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ELTVDFRNQIEEYAFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
             IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|254227791|ref|ZP_04921222.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395834|ref|YP_003287687.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25]
 gi|151939833|gb|EDN58660.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339428|gb|ACY53222.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25]
          Length = 858

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 157/398 (39%), Gaps = 32/398 (8%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F+++   ++    +     +   +  +     + V+   G +   NPA R   
Sbjct: 331 GGSDIEEFDHIGSTLENTFEELEAQKRSFRDLFNFALSPIMVWSESGVLIQINPAARK-- 388

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                 L     I  +      +  +       AA       +  +L G    + D V  
Sbjct: 389 -----ELVMENDIETMHPVFKGFKEKLMPHLRMAA-------QGATLTGVNVPIGDKVYR 436

Query: 528 YSIIPLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ P+      +  ++   ++T  + AE+      +   K+ + +  F+  +S+E+R+P
Sbjct: 437 WNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARKEAEKSAQARADFLAKMSHEIRTP 496

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   LLK S       +Q+  ++ +  S   LL ++NDILD + ++ G   +   
Sbjct: 497 INGILGVAQLLKDSV---ETEEQNNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKH 553

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFS 702
                D +  ++           + + + +          D+ RL QI   ++SN++ F+
Sbjct: 554 PFSFTDTIRTLENIYRPICENKGVNLVIENKIDPNVEIFTDQVRLNQILFNLVSNSVKFT 613

Query: 703 SKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
             GS V L A        +N   +  + + G  I  D    +F  FV       R   G 
Sbjct: 614 PSGS-VRLHAELEQFYGAENSVLVVEITDTGIGIEPDKLDQMFEPFVQEEATTTREYGGS 672

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+IV+S +++  G V + S     TT    +P K+
Sbjct: 673 GLGLTIVKSLVDMLEGDVQVRSQKGLGTTFVITMPVKD 710


>gi|153820784|ref|ZP_01973451.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229510010|ref|ZP_04399490.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229516429|ref|ZP_04405876.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229605664|ref|YP_002876368.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255746528|ref|ZP_05420475.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262158884|ref|ZP_06029997.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
 gi|126521827|gb|EAZ79050.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229346310|gb|EEO11281.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229352455|gb|EEO17395.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229372150|gb|ACQ62572.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255736282|gb|EET91680.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262029457|gb|EEY48108.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
          Length = 984

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 127/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L++
Sbjct: 494 LLQDT---TLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVS 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRI 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFWFTLPL 691


>gi|116621165|ref|YP_823321.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116224327|gb|ABJ83036.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 2384

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 130/272 (47%), Gaps = 19/272 (6%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             Q         +  +A+ AL EK E L    + K+ F+ ++S+ELR+PL N++    +L 
Sbjct: 1640 EQKNEVETKNREVEQAKAALEEKAEQLSLTSKYKSEFLANMSHELRTPLNNLLILAQMLA 1699

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +   +L+SKQ +Y E I +S T LL L+NDILDL+ +++G M +   ++  ++L +   
Sbjct: 1700 ENAESTLSSKQVKYAETIHSSGTDLLALINDILDLSKIESGKMDVEVGSVHFSELRDLSS 1759

Query: 656  QSIATKMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            ++         + + +     L   + + D +RL Q+   +LSNA+ F+ +G+ V L+  
Sbjct: 1760 RTFRHVAEGKGLDLSIELADNLPSETIITDAKRLQQVLKNLLSNALKFTEQGA-VRLRVE 1818

Query: 714  RDNGDF--------------IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            R    +               FSV + G  IP+D  + +F  F         +  G GLG
Sbjct: 1819 RATSGWSASHPVLNRVKSVIAFSVTDTGIGIPQDKQRIIFEAFQQADGTTSRKYGGTGLG 1878

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LSI      L GG + + S+    +T    +P
Sbjct: 1879 LSISRELTRLLGGEIRLQSAPGAGSTFTLYLP 1910


>gi|239905687|ref|YP_002952426.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795551|dbj|BAH74540.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 705

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 161/389 (41%), Gaps = 18/389 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            ++T +  +E        +  +        ++  +  + V   D  I  +N  F  ++  
Sbjct: 166 RDITEKKFVEISLKKNQAILEKHLLWKENILNTSAVAILVVVKDRVIADANIGFEEMFGY 225

Query: 470 EENRL-SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +  L      + ++       Y + +        +   + + K   G++ +   S    
Sbjct: 226 SKKELIGHSVRMLHVDGELFEQYGKINWSQTSTTKVVKCEWKLKKKDGSIIICEVSGSAI 285

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +   L     +    N+T+  + E  L    +    A++ K+ F+ ++S+E+R+PL  I+
Sbjct: 286 NPHDLSEG-VIWIATNITEKKKFESELISSKKIADAANKAKSEFLANMSHEIRTPLNGIL 344

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL++++    N +QS+Y++    S   L  L++ ILDL+ ++ G   L      + 
Sbjct: 345 GMLQLLESTQ---TNHQQSEYIDIALNSGRNLNKLISGILDLSRIEQGNTTLESHGFNIK 401

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
            L++++  +  T++    + I       +   +  D  RL QI   I+ N++ F+  GS 
Sbjct: 402 HLIDDIVNTFITELSSKKLLITTTIAKIMPDVIYGDSGRLRQIIFNIVGNSIKFTPFGSV 461

Query: 708 -VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
            + + +            + + G  IPED    +F  F         +  GVGLGLSIV+
Sbjct: 462 AISIDSLTSGNTIHVFIEISDTGIGIPEDKLDDIFYPFTQLDGSLTRKYGGVGLGLSIVK 521

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +    G +++ S++ G T     IP K
Sbjct: 522 KQLLAMEGSITVESNESGGTKTCIAIPFK 550



 Score = 42.2 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 25/165 (15%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +   L     IL+   VAI +  ++R +   N  F E++      L  +      + 
Sbjct: 182 QAILEKHLLWKENILNTSAVAILVVVKDRVIADANIGFEEMFGYSKKELIGHS-----VR 236

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLH-----VIVTSNP-R 409
            L    +L EQ     W +       +++  K  W L   +G  +        +  +   
Sbjct: 237 MLHVDGELFEQYGKINWSQT-----STTKVVKCEWKLKKKDGSIIICEVSGSAINPHDLS 291

Query: 410 GGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGV 447
            G IW+  N+T +   E++        +   K + E + ++S  +
Sbjct: 292 EGVIWIATNITEKKKFESELISSKKIADAANKAKSEFLANMSHEI 336


>gi|70730615|ref|YP_260356.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344914|gb|AAY92520.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1164

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/366 (24%), Positives = 164/366 (44%), Gaps = 14/366 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ ++         G I  S  A R   + +E           +     
Sbjct: 365 LRALSERDVELLELIA---------GNIGTSIEAARYRQRLQEVLAETQQLNEELQVQQE 415

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + I+       ++ Q  LE  ++ + E + I       M    N  + 
Sbjct: 416 ELKTANEELEEQSRILKESQVHLETQQVELEQTNEQLAEQAQILADQRDAMDRKNN--EL 473

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+  L E+ E L+++ + K+ F+ ++S+ELR+PL + +    LL  +   +L+ +Q +
Sbjct: 474 NEAQTQLEERAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSPEQVK 533

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD++ V+AG +++      +  L++ ++        +  + 
Sbjct: 534 FAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENASVPRLVDGLRSLFQPLTQDKGLE 593

Query: 669 IKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            KV    G       DRQR+ QI   +LSNA+ F+ KG   +  +A+      F+V+++G
Sbjct: 594 FKVELQPGAPQMLFTDRQRVEQILKNLLSNAVKFTEKGQVSLTVSAQPGAGIAFAVQDSG 653

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +D  +S+F  F        RR  G GLGLSI      L GG +S+SS     +   
Sbjct: 654 IGIAQDQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLATLLGGSISVSSEPGRGSIFT 713

Query: 786 CRIPSK 791
             +P +
Sbjct: 714 LVLPEQ 719


>gi|330977654|gb|EGH77557.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 782

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 170/390 (43%), Gaps = 21/390 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM   +  +   E       +     ++     + V   +G +++ N ++  ++  +  
Sbjct: 200 AWMRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQRE 259

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  +L     + + I+P
Sbjct: 260 DIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQL----TIYHWILP 315

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  ++++++  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 316 FRDSLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 375

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E   +S+  LL+L+ DILD+A +++G + LN     
Sbjct: 376 IGMLELALKRADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERAN 432

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+  V +       + ++ + +  D ++    + D  R  QI S ++SNA+ F+  G
Sbjct: 433 LRRLVESVLRVFDGLARQKDLELVLELDSRISADVLIDPLRFKQILSNLVSNAIKFTPMG 492

Query: 706 ST-VILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
              V+L+AA            +V+++G  I  +  + +F  F    + GQ  R G GLGL
Sbjct: 493 RIKVVLQAAESPNPQLLHLHITVQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGL 552

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  +   + GG++S+ S+    T I+  +
Sbjct: 553 VICRNLCMMMGGNLSLYSTPGHGTRISMNL 582



 Score = 47.2 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L +     + L +     ++ RD+ G +   N SY +         
Sbjct: 202 MRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLR---VFSAQR 258

Query: 234 QKAIGESRK--LFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKS---YKIVRVLN 284
           +  IG+S    +     + R  ++         T   L+     G+ +    + I+   +
Sbjct: 259 EDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQLTIYHWILPFRD 318

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   + + L    E     + A + F
Sbjct: 319 SLGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTF 360



 Score = 37.6 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 87/271 (32%), Gaps = 30/271 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  + DQ      ++      I + D+   L+  N S++ ++      +    + + +
Sbjct: 211 AAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGV 270

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L     A +                + +          +     L    +     G I  
Sbjct: 271 LGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQLTI-YHWILPFRDSLGEVQGIIGG 329

Query: 416 FENLTVQVDL-------ETKYNTLVKVQGETIDHLSEGV-----AVFG---------PDG 454
           + +++ +  L       + + +   + +   +  +S  +     AV G           G
Sbjct: 330 WIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHG 389

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDD- 509
            +  S  A    + +  + L     I +IA   S   +     ++   L  +++  FD  
Sbjct: 390 ELDRS--AIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 447

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +K L+  LEL S    +  I PL   Q +
Sbjct: 448 ARQKDLELVLELDSRISADVLIDPLRFKQIL 478


>gi|225026716|ref|ZP_03715908.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353]
 gi|224955977|gb|EEG37186.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353]
          Length = 961

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 124/251 (49%), Gaps = 8/251 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D+ +    L    +    A   K SF+ ++S+++R+P+  I+G+  L++    G    +
Sbjct: 549 NDTQKLNEKLEIALKKAEDASLAKTSFLNNMSHDIRTPMNVILGYAQLMENELNGKDIPE 608

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +++E +  S  +LL+++N++LD+A +++G M+++ +   + D+   +      K  + 
Sbjct: 609 VLEHLEKLQQSGNLLLSIINNVLDMARIESGRMEIDENYCRIEDVWKSLFAVFDEKARKK 668

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGD--F 719
           NI +    + +    + D  ++ +I   ILSNA+ ++  G +V++        ++G    
Sbjct: 669 NISLHYTMNVEHEHVLTDVTKVKEILVNILSNAIKYTPAGGSVMVYVDELPCDESGYMIV 728

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              + + G  + +D    +F  F    +  + +  G GLG+SIV+++++L GG + + S 
Sbjct: 729 RIRISDTGIGMSQDYLTKIFEAFTREKNTTKSKIAGTGLGMSIVKNYVDLLGGTIDVESE 788

Query: 778 DEGVTTINCRI 788
               +T    +
Sbjct: 789 LGKGSTFTVTL 799


>gi|163745614|ref|ZP_02152974.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161382432|gb|EDQ06841.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 696

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/445 (21%), Positives = 176/445 (39%), Gaps = 46/445 (10%)

Query: 378 IFSVYKSSETHKDTW--HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
            F V++ + T K+ W  H P+   LH ++      G       +   + L        + 
Sbjct: 251 AFGVWQLAATVKNGWPEHRPDF-WLHWLLRLQGAAGVTIFAWYI---MRLAENRKLAEER 306

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               I+ L  G  ++   G + L N  +R +    E  + PG+    I     R     D
Sbjct: 307 LRMGIEALDHGFVMYNAKGILVLCNEKYREIHDYSEV-VKPGSSYEKIVRDSIRRGIVPD 365

Query: 496 GWDLFAAIITSFDDERK--SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                   I  + ++R+  + +    +    ++  S   + +   +   ++VTD  +A  
Sbjct: 366 AVGKEEEWIRVWLEKRENGAFETEQRMPDGRIIRTSDRRMEDGSVVGLRIDVTDLKKA-- 423

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT----------SKLGSLN 603
                      A++ K  F+  +S+ELR+PLT I+G   L +           S     +
Sbjct: 424 -----LLTAEDANKAKTDFMGVLSHELRTPLTVILGHVRLARHFDRTPAARDLSTAIDAD 478

Query: 604 SKQSQYV---------------EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            +  + +               + +  S   LL L+N++LD A +DAG + +    + ++
Sbjct: 479 PQTRETLAPKLATTLSKLGDIMQTVERSGNHLLTLINEVLDFAKIDAGSLSITMEPVQID 538

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D++      +   + +  + +KV S    G  +AD +R+ QI   +LSNA  FS +G T+
Sbjct: 539 DIVAPTVDQLRPMIEDKGLELKVKS--ATGVMLADGKRIQQILINLLSNATKFSDQG-TI 595

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            L          F V + G  IPE+  + VF  F        RR  G GLGL+I      
Sbjct: 596 SLTCRIRGEVVEFRVTDTGIGIPENELERVFEPFHQVDSTATRRFGGTGLGLAISRDIAT 655

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG +  +S     ++    +P +
Sbjct: 656 AHGGSLVATSIIGKGSSFLLTLPLR 680



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 51/156 (32%), Gaps = 5/156 (3%)

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQ 329
              + +  +L   G AG+ I     + + +      E L      L     +++    L 
Sbjct: 269 RPDFWLHWLLRLQGAAGVTIFAWYIMRLAENRKLAEERLRMGIEALDHGFVMYNAKGILV 328

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N  + E+ +        +     + + +R    +P+ +  +     ++   + +   +
Sbjct: 329 LCNEKYREIHDYSEVVKPGSSYEKIVRDSIR-RGIVPDAVGKEEEWIRVWLEKRENGAFE 387

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
               +P+G+ +         G  + +  ++T     
Sbjct: 388 TEQRMPDGRIIRTSDRRMEDGSVVGLRIDVTDLKKA 423


>gi|229109031|ref|ZP_04238632.1| hypothetical protein bcere0018_13040 [Bacillus cereus Rock1-15]
 gi|228674500|gb|EEL29743.1| hypothetical protein bcere0018_13040 [Bacillus cereus Rock1-15]
          Length = 591

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V   G +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKGPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P +
Sbjct: 577 GEGTTFSVYLPHR 589


>gi|256822064|ref|YP_003146027.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
 gi|256795603|gb|ACV26259.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
          Length = 950

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 127/243 (52%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L        +A  IK  F+ ++S+E+R+P+  +IGFT+LL  ++   LN+KQ  ++  I
Sbjct: 286 ELDIARRQALEASRIKTEFLANMSHEIRTPMNGVIGFTELLLKTE---LNNKQKDFLFDI 342

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+T LL++++DILD + ++AG M        L + ++++ + +    ++  I +  +I
Sbjct: 343 KRSATSLLSIIDDILDYSKIEAGKMSFERYPFDLRECVDDIFRMLGPNANKKGIELVSLI 402

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
                 + + D  R+ QI + +++NA+ F+  GS V L A  ++ +         VK++G
Sbjct: 403 YSDVPKALLGDPIRIKQIITNLVNNAIKFTKSGS-VELYAEVESENQKGLKLKVQVKDSG 461

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + ++  +++F  F       +R   G GLGL I +S +   GG++ ++S+    +T  
Sbjct: 462 IGLTQEQQRNLFKAFSQADSSTKREFGGTGLGLVISKSLVEKMGGNIGVNSTAGDGSTFW 521

Query: 786 CRI 788
             +
Sbjct: 522 FTL 524


>gi|254446841|ref|ZP_05060316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256266|gb|EDY80575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 614

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 11/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L + ++    A E K+ F+ ++S+E R+PL  I+G T L   +   S N++Q + +E + 
Sbjct: 228 LRKSSKQANAASEAKSEFLANMSHEFRTPLNGIMGMTQL---AISKSSNTQQKELLEVVI 284

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL +VNDILDL+ +++  + +    + L+ L++           +  I       
Sbjct: 285 QSADALLMIVNDILDLSKIESHRLTIESEPVSLHALVDSTTPFFQLVAKQKGIEFTTTVS 344

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSS 729
            +     V+D  RL QI   +  NA+ F+  GS V +        D    +F + + G  
Sbjct: 345 PRCPELIVSDAVRLRQILFNLTGNAIKFTKSGS-VTVSIEPIQLPDGKYLLFEIADTGIG 403

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP+ +  ++F  F        R   G GLGL+I     +L GG V + S  E  +  +  
Sbjct: 404 IPDKLLNTIFEAFTQADTSSTRNFGGTGLGLTITRQLTHLLGGEVHVESVVEKGSVFSVF 463

Query: 788 IPS 790
           IP 
Sbjct: 464 IPL 466


>gi|162210777|ref|YP_562200.2| hybrid sensory histidine kinase BarA [Shewanella denitrificans
           OS217]
          Length = 950

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 153/367 (41%), Gaps = 19/367 (5%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L+  +   ++     +A F     I L    F +L+ T          I  +    ++  
Sbjct: 191 LLNKENALLEQHRAAIAAF----VIVLIGVQF-NLFFTFRLVKHVNFPITEMVRVVAKIR 245

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                  L   +I   D  ++ +      LS+   E           +   +   +    
Sbjct: 246 EGKLDARLDGNLIGELDLLKRGINAMAGSLSEYHDEMQQNIDQATFDLRETLEQIEIQNV 305

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYV 610
           E  L    +  ++A +IK+ F+ ++S+ELR+PL  +IGF   L+KT     L++ Q  Y+
Sbjct: 306 E--LDLAKKRAQEASQIKSEFLANMSHELRTPLNGVIGFARQLIKT----PLHASQLDYI 359

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S+T LL ++NDILD + ++AG M+L      L + + E    IA       + + 
Sbjct: 360 KTIDRSATNLLGIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELV 419

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIF--SVKN 725
           +  D  +   V  D  R+ QI + ++ NA+ F+  GS V  ++  A  +        V +
Sbjct: 420 IDIDENVPEHVSGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVID 479

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +   + +F  F        RR  G GLGL I +  IN  GG +  +SS E  + 
Sbjct: 480 TGIGIDDSQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSN 539

Query: 784 INCRIPS 790
               +P 
Sbjct: 540 FWFILPL 546


>gi|149198482|ref|ZP_01875527.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
 gi|149138488|gb|EDM26896.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
          Length = 591

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/384 (25%), Positives = 166/384 (43%), Gaps = 15/384 (3%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +FE L     LE+  N L+ ++G+ I   S+ + +F       L NP    +    E  L
Sbjct: 66  LFEQLDRTFVLESIDNNLLSLKGQIIYQESDELFIF-------LCNPIISKMDSLVELGL 118

Query: 475 S-PGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +     + N  A      N  D     A  +     +    L+ +  LL   V E +   
Sbjct: 119 NLHNLPMHNFLADFIFLLNTKDSLLTDANHLNQRLKEADTKLKQSNLLLEAKVKERTHNL 178

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + +   ++V     AE+ L         A + K+ F+ ++S+E+R+PL  I+GF +
Sbjct: 179 RIREEELRDEISVRKD--AEKELIAMKLRAEDASKAKSQFLANMSHEIRTPLGAIMGFNE 236

Query: 593 -LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+ SK   L      Y+ YI  S   LL ++N+ILD++ ++    KL    + L    
Sbjct: 237 ILLENSKSLELPDYYPLYLNYIDNSLQYLLKVINNILDISKIEERKFKLKVEDVDLEKFF 296

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +  +      E  I     +   +  +V  D  +L Q+   +L NA  F+     V +
Sbjct: 297 KNIVYTYKHLAEEKKINFIYKNTELIAKYVKIDPVKLQQVIINLLDNAFKFTPVNKLVEM 356

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLH 768
               D+   I  V++ G  IP++  +++F  F  V +++    +G GLGLSI + FI L 
Sbjct: 357 TVKTDDQKLIILVRDEGIGIPKEYQETIFKVFEQVDDSNTRSYQGTGLGLSISKKFIELM 416

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG +S+ S     +  +  +P KE
Sbjct: 417 GGIISLESGINQGSMFSINLPLKE 440


>gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 810

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 149/326 (45%), Gaps = 25/326 (7%)

Query: 479 HIRNIAATCSRYYNESD--------GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            I  +     R   E +        G D    +++ F+   + ++      SD+ L+ + 
Sbjct: 207 PIAELLEVTRRVAEEHNYSVRAAGGGVDEIGELVSGFNRMLQIIEE-----SDANLKRNR 261

Query: 531 IPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             L       T      +   ERA   L++  EA   A + K+ F+ +VS+E+R+P+  +
Sbjct: 262 EDLGEEVARRTEDLSRTNEELERAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGV 321

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LL  +    L +KQ +Y E I +S  +L+ ++ND+LD + +++G +K+       
Sbjct: 322 LGMVSLLLET---DLQAKQREYAEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAA 378

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             ++ E+      +  +  + ++    G++    + DR RL Q+   +L NA+ F+ KG+
Sbjct: 379 RRVIEEMATIYGERARQKGVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKGT 438

Query: 707 -TVILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            T+ ++ + + G    S  V + G  IP+DM   +F+ F        RR  G GLGL+IV
Sbjct: 439 ITLTVRGSVEGGVCRLSCIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIV 498

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
              + L GG VS  S     +     
Sbjct: 499 RHLVELMGGTVSCDSEPGCGSVFRFT 524


>gi|295398638|ref|ZP_06808663.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
 gi|294973126|gb|EFG48928.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
          Length = 631

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 170/392 (43%), Gaps = 32/392 (8%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G        L+V+V D +       +     + H+++GV      G+I + N    ++  
Sbjct: 246 GQLAESINYLSVRVGDAQDLTEAERQRLDSVLRHMTDGVIATDRRGKITIINDRSLNILN 305

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF-DDERKSLQGTLELLSDSVLE 527
             +  +   + I  +    S  ++  + +D   +I+ ++ +DE +++            E
Sbjct: 306 KTQEEVIGESIIEAL--DLSDRFSFRELFDQHESILLNYANDEGETIIRA---------E 354

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           YS+I   +         +TD    E           K +  +  FV ++S+ELR+PLT++
Sbjct: 355 YSVIQRESGFISGLVWVLTDITEHE-----------KIERDRKQFVSNISHELRTPLTSV 403

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             +++ L    +        +++  I   +  ++ +++D+L L+ +DA    +N   I+ 
Sbjct: 404 RSYSEALVDGAIKD-EKVAVEFLNVIQTETDRMIRMISDLLHLSRMDAKQQVINRELIIF 462

Query: 648 NDLLNEVKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            DL+N +       +        N  IK     +      D+ +L+Q+   I++NA+ +S
Sbjct: 463 KDLVNHILDRFNMMLQSEDYEGKNYIIKRELMEEEVWVEIDQDKLIQVIDNIMNNAIKYS 522

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
             G T+ ++    +   + S+++ G  IP++    +F+RF          + G GLGLSI
Sbjct: 523 PDGGTIYVRLMSTHNQLVLSIQDQGLGIPQESIPHLFDRFYRVDKARSRAQGGSGLGLSI 582

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +  I LH G + ++S +   TT    +P +E
Sbjct: 583 AKEEIELHNGKIWVNSIENKGTTFFISLPFEE 614


>gi|91774323|ref|YP_567015.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713338|gb|ABE53265.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 505

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 174/385 (45%), Gaps = 18/385 (4%)

Query: 423 VDLETKYNTLVKVQ-------------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           ++L T+  +L++++              + +D     + V   D ++ L N     +   
Sbjct: 120 LELTTRVRSLLRMKELHDQLVKEKDQAQKYVDVAGSIIGVISKDLKVTLVNQKACDVLGY 179

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEY 528
           E++ +              R   +     +    +   +  E+  L  T E       + 
Sbjct: 180 EKDEIIGKNWFDAFLPGYVRERIKEGYIGVIEGKLEPPEYSEKPILNKTNEERLIFWHDV 239

Query: 529 SIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            +    N    T+ +  ++T+   AE+A+ E N  L   D IK+ F+ ++++ELR+PL +
Sbjct: 240 VLRDKDNNIIGTISSGDDITERKIAEKAMEEANRELELLDNIKDQFLTNLTHELRTPLIS 299

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I GFT+L+    +G +N  Q   +  +  +S  L +LV  +L ++      +K N   + 
Sbjct: 300 IKGFTELMLEDHMGPINDAQKNAIHTVLRNSERLRHLVESLLYVSGEHTKNIKYNMDVLS 359

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  +  E+ ++    + +  + I+      L + + D+  L ++ + +L NA+ F+ +G 
Sbjct: 360 LTKITEEILETFTAPILKKGLTIERNIQTDLPTILGDKDHLKRMINHLLDNAIKFTPEGG 419

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
            + + A  D+   I ++++ G  IPE++  ++F+RF     + R +  G G+GL I +  
Sbjct: 420 KIGISALHDSESVIINIEDTGIGIPEELLPNIFSRFYQVDGSTRRKYGGTGVGLHICKKI 479

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I  H G +S+SS     T I+ ++P
Sbjct: 480 IEAHKGSLSVSSKIGEGTIISVKLP 504


>gi|127511913|ref|YP_001093110.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126637208|gb|ABO22851.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1171

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/405 (22%), Positives = 171/405 (42%), Gaps = 40/405 (9%)

Query: 411 GTIWMFENLT--VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G +++F  +                      ID   + +   G  G +   N A   L+ 
Sbjct: 341 GVLFLFVVIILGRSARSSQALAKEKAQSAAIIDGSKDAIIGVGTSGVVNNWNRAAELLFG 400

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE- 527
            + +  + G  I  +A        E D   L +       ++  +L   L L    +++ 
Sbjct: 401 YDADY-AKGHFINQLA-----LLPEVDLAALVSKANQG--NKTLNLDAELPLNEGRIVDL 452

Query: 528 -YSIIPL--PNAQTMLTFVNVTD--------------SVRAERALTEKNEALRKADEIKN 570
             S+ P+   N   +   + + D              +   E+ +  + + L+KA  +K+
Sbjct: 453 YVSVSPILGENKHALGVAIIIRDVSIEKQAAKKIQLVNAELEKKVAIRTQELQKASLVKS 512

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           SF+ ++S+E+R+PL  I+G  +L++     SL  +Q++Y+E    S   L  L+ND+LDL
Sbjct: 513 SFISNISHEMRTPLNGIVGTLNLVRK---DSLTERQARYLEMAEVSVNTLSALINDVLDL 569

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQ 689
           + ++AG + L+ S+    +L+  V  S+A K  E  I   +   D +  S  +D  R+ Q
Sbjct: 570 SKIEAGKLDLDMSSFNPLNLIESVCSSMAVKAQEKGIEFVIDVVDLRCQSVDSDPHRITQ 629

Query: 690 IFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVS 744
           I + +++NA+ F+  G  + ++A    R+ G+  F   V + G  I E+    +F  F  
Sbjct: 630 ILTNLINNAIKFTDHG-YIKVRAHSRLRETGELEFICEVSDTGIGIAEENQAKLFTAFSQ 688

Query: 745 NAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  Q  G GLGLSI +    L  G +S  S     +     
Sbjct: 689 ATSSIAAQYGGTGLGLSICKELSELLNGKMSFESHKGQGSCFIFT 733


>gi|290511586|ref|ZP_06550955.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Klebsiella sp. 1_1_55]
 gi|289776579|gb|EFD84578.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Klebsiella sp. 1_1_55]
          Length = 784

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 23/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K     ++Q           +D   + V     D      N A   L    E 
Sbjct: 139 EQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 198

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 199 QLIHLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 253

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 254 YYDRVGKRRGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 311

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++   L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 312 ILLDTE---LTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLA 368

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++
Sbjct: 369 DLENLSGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVR 428

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD + F V+++G  IPE     +F  +         +   G G+GL++       
Sbjct: 429 VRYDEGDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARN 488

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG +S++S      T    
Sbjct: 489 MGGDISVTSQPGKGATFTLT 508



 Score = 45.3 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 17/152 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +L+ +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T  
Sbjct: 136 TTLEQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGK 195

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV- 280
                Q    + + ++ EE  ++++ +   EK F   VS           G    ++I  
Sbjct: 196 S--EKQLIHLKPQDVYSEEAAEKVLETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRK 251

Query: 281 -----RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                RV    G  G   D+++     D L  
Sbjct: 252 VPYYDRVGKRRGLMGFGRDITERKRYQDALER 283


>gi|48256736|gb|AAT41590.1| GacS [Pseudomonas fluorescens]
          Length = 917

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 142/316 (44%), Gaps = 15/316 (4%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           I++  A     + E+    L +  +         + GTL+   +  L++SI    +  T 
Sbjct: 201 IKHAVAQLKDGHLETRLPPLGSQELDELASGINRMAGTLQNAQEE-LQHSI----DQATE 255

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               N+         L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+ 
Sbjct: 256 DVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE- 314

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q  Y+  I  S+  LL ++N+ILD + ++AG + L+     L DLL +    +A
Sbjct: 315 --LTPRQLDYLGTIEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILA 372

Query: 660 TKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              H   + +  ++      S V D  RL QI + ++SNA+ F+ +G+ V      D  +
Sbjct: 373 PAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHE 432

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
                  S+++ G  +     +++F  F    +    Q  G GLGL I +  +   GG +
Sbjct: 433 DSVQLRISIQDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEI 492

Query: 773 SISSSDEGVTTINCRI 788
            + S+    +     +
Sbjct: 493 GVDSTPGEGSEFWISL 508


>gi|239625873|ref|ZP_04668904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520103|gb|EEQ59969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 840

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 10/245 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L  + E    A+  K+ F+  +S+E+R+PL  I+G  +L K+        +    ++ 
Sbjct: 308 ELLLAEKERAEAANRAKSDFLSQMSHEIRTPLNGIMGMAELGKSH--TGEPDRMRNCLDK 365

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SST LL+L+NDILD++ +++G ++L+     L  LL  +      +     I   + 
Sbjct: 366 ITLSSTHLLSLINDILDMSKIESGKIELHMERFDLGQLLRALTTVFHVQAVSRQIDYHIF 425

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNG--DFIFSVKNN 726
             G++  ++  D  RL QI + +LSNA+ F+     V L   +  RD       F V++ 
Sbjct: 426 LYGEIEEYLTGDSLRLNQILTNLLSNALKFTPAQGQVSLNVSELRRDESGIWLRFEVRDT 485

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    VF  F         Q  G GLGL I ++F+ + GG +++SS     +  
Sbjct: 486 GRGIAPENIDRVFEAFTQENSGIARQYGGTGLGLPITKNFVEMMGGSITVSSKVGAGSIF 545

Query: 785 NCRIP 789
              IP
Sbjct: 546 TVDIP 550


>gi|268318211|ref|YP_003291930.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262335745|gb|ACY49542.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 352

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 131/280 (46%), Gaps = 7/280 (2%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           + L   +   S   LE + +P    Q       +    R  R L ++ E L++ +  +  
Sbjct: 71  RELLRQIRRRSFENLELAHVP----QGDELNSLIWQVYRTGRTLEKEIEELKRMENYRRE 126

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ +VS+EL++P+ +I GFT+ L  +  G   + +  ++E I  ++  L NLV D+ +++
Sbjct: 127 FLGNVSHELKTPIFSIRGFTETLLEADPGD-EATRRAFLEKILRNADRLANLVRDLTEIS 185

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++ G ++L      L  L+ EV +S+        + ++      L   + DR+RL Q+ 
Sbjct: 186 RLETGELQLQPVPFELPALVREVLESMEPLAATRQVSLRCCVPENLPHVLGDRERLRQVL 245

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             ++ NA+ +++ G  V ++    +G    +V +NG  I       +  RF        R
Sbjct: 246 INLVDNAIKYNNPGGFVEVRLQEQDGSVRVAVVDNGIGIAPQHIPRLTERFYRVDRSRSR 305

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              G GLGL+IV+  +N H   + I S+    +T   R+P
Sbjct: 306 EQGGTGLGLAIVKHILNAHQTRLEIESTPGKGSTFAFRLP 345


>gi|218231513|ref|YP_002366258.1| sensor histidine kinase ResE [Bacillus cereus B4264]
 gi|218159470|gb|ACK59462.1| sensor histidine kinase ResE [Bacillus cereus B4264]
          Length = 591

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|91773147|ref|YP_565839.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91712162|gb|ABE52089.1| pleC-like multisensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 507

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 4/375 (1%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G   +  N+     +E +     +     +D     + V   D RI L N     L   +
Sbjct: 133 GINGIMVNIAQLKVIEFELMKQKEKAQHYLDVAGVAIIVIDNDHRISLVNKKACGLLGYK 192

Query: 471 ENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           E+ L        +     R              A+ T F+    + +   +L S    + 
Sbjct: 193 EHELLNRNWFEMVVPEEIRDSVAQTFTFSCSENALSTPFECAINTKEKQNKLCSWKCTQL 252

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +L   ++T+  + E AL         A+  K+ F+ ++S+ELR+PL  II
Sbjct: 253 KDENGNTNGYILAGEDITERKQVEEALLNAKHMAEDANRTKSEFIANMSHELRTPLNAII 312

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+++L   K G LN KQ +Y+  I  S   LL ++N IL+++ +++G +++NY TI L 
Sbjct: 313 GFSEILIEKKFGDLNDKQDKYLNNIFISGKKLLEIINSILEISKIESGNIEINYKTISLG 372

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           DL+ ++K+ I  K+ +    +       + + + D  ++ +    ++ NA+ FS K   V
Sbjct: 373 DLIEDLKEDIKEKLPDQAEMVSFEILTNIENIIVDINKVEKSVLHLIENAIKFSDKTQHV 432

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            +     +    F V + G  I E+  K +F  F        R   G+G+GL I++    
Sbjct: 433 EVSLESVDEMIAFKVTDRGIGITEEDIKRLFKPFNQLDASSTRVYGGLGIGLYIIKKIAE 492

Query: 767 LHGGHVSISSSDEGV 781
           LHGG ++I S  E  
Sbjct: 493 LHGGGLAIKSELEKG 507



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 100/304 (32%), Gaps = 40/304 (13%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK----- 224
            LD       +  L  KK+       K+  ++L+ +++  ++ G+  + + + +      
Sbjct: 9   ELDEADELRTKLKLANKKIEEIEEFNKLHIENLNDVIFSINEQGNFTYISPAIEDFTGYR 68

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
             E  G  F + I          ++   ++     K +   V +        +   R + 
Sbjct: 69  AEEVMGTSFMQYIHPDD--LPGLLQDIDLTLEGEHKPYMFRVVSKTGNITYVHTSSRGIL 126

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFV 336
             G+     GI +++++   +  +L    E     L    VAI + D +  +   N+   
Sbjct: 127 KNGKVVGINGIMVNIAQLKVIEFELMKQKEKAQHYLDVAGVAIIVIDNDHRISLVNKKAC 186

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK---------SSET 387
            L               ELL        +PE++     +   FS  +         +  T
Sbjct: 187 GLLGY---------KEHELLNRNWFEMVVPEEIRDSVAQTFTFSCSENALSTPFECAINT 237

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETI 440
            +    L + +   +   +    G I   E++T +  +E              + + E I
Sbjct: 238 KEKQNKLCSWKCTQLKDENGNTNGYILAGEDITERKQVEEALLNAKHMAEDANRTKSEFI 297

Query: 441 DHLS 444
            ++S
Sbjct: 298 ANMS 301


>gi|294055873|ref|YP_003549531.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293615206|gb|ADE55361.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 586

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 8/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +   +   +K+ F+ ++S+E+R+P+  ++G  DLL  +++   +++Q Q V    
Sbjct: 170 LAYSRDKALEGVRMKDIFLANMSHEIRTPMNGVLGMIDLLYDTEM---DAEQEQLVGTAR 226

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+  L+ ++NDILD + ++AG + +      L +++       +    E  I + V  D
Sbjct: 227 SSAETLMRIINDILDFSKIEAGKVSVELMPFNLIEIVESSAALYSEAATEKEIDLAVAFD 286

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIP 731
                 V D  R  Q+ + ++SNA+ F+  G   I     + G     +  VK+ G  IP
Sbjct: 287 DVPAWVVGDPHRYQQVLNNLISNAVKFTDSGEVEIRACQVETGSGLGILTEVKDTGIGIP 346

Query: 732 EDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +F  F     +H  +  G GLGLSI  +   L GG +   S  +  T  +  +P
Sbjct: 347 ASKVTKLFEPFTQAEESHARRFGGTGLGLSICRNLCELLGGEIECDSQLDDGTVFSFVLP 406


>gi|126658538|ref|ZP_01729685.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126620125|gb|EAZ90847.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 746

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 9/250 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +       L +  +   +A++ K+ F+ ++S+ELR+PL  I+G+  +L+ +   +L   
Sbjct: 272 QEKQEYTEQLEKAKKMADEANQAKSDFLSNISHELRTPLNGILGYAQILERN--SNLTPL 329

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q+  +  I  S   LL L+ND+LDL+ ++A  + L  + I  +  LN V + I TK  + 
Sbjct: 330 QTDGLRIIHNSGNHLLTLINDLLDLSKIEARKLDLYPTDIDFHTFLNTVVEMIHTKARQK 389

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAA----RDNGDF 719
           +I +  + D  L  +   D +RL QI   +L N + F+ +G  +  ++        N  F
Sbjct: 390 DIVLVYLPDPNLPKAVQVDEKRLRQILLNLLGNGVKFTDQGKVIFKVQVTPLSLTINQTF 449

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSD 778
            F + + G  I E+  ++VF  F    +   R  G GLGL+I +  I L GG + + S  
Sbjct: 450 RFEIIDTGVGINEEYLETVFKPFEQVGNVQHRSEGTGLGLAISKQLIELMGGELKVESKV 509

Query: 779 EGVTTINCRI 788
              +     I
Sbjct: 510 NQGSKFWFDI 519


>gi|17229375|ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130973|dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1194

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 9/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q         +  +A + + EK E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 496 QNNEVARKNQEIEKARKFIEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLAD 555

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G+L++KQ +Y + I ++ T LL L+NDILDLA +++G + +    I   DL + +K+
Sbjct: 556 NSSGNLSNKQVEYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIKR 615

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +      +  +   +  D +L  + ++D +RL QI   +L+NA  F+ +G  V L+   D
Sbjct: 616 TFQQVAQDKGLSFSIERDERLPSTILSDPKRLQQILKNLLANAFKFTEQGG-VNLRIGLD 674

Query: 716 -----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
                +    F++ + G  IP++  + +F  F         +  G GLGLSI      + 
Sbjct: 675 QINTNHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELAQML 734

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG + + S     +T    +P
Sbjct: 735 GGRLGLVSQPGQGSTFTLYLP 755


>gi|227356090|ref|ZP_03840480.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
 gi|227163735|gb|EEI48647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
          Length = 919

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 169/384 (44%), Gaps = 33/384 (8%)

Query: 413 IWMFEN--LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKT 469
           +W+FE    +   +  ++     +   + +     G+++    DG I LSN         
Sbjct: 311 VWIFERKIFSPAENNASRLEEHEQFNHKIVASAPVGISILRIRDGMIILSN--------- 361

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                        +A    R  + SD  ++ + I     +    +      L  S +   
Sbjct: 362 ------------ELAHNYFRLLSHSDKQNILSIIAEKSSNIVDVVTNNHNHLQISFVNSR 409

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                    +   V+++  V+ ER+L     A  +A++ K+ F+  VS+ELR+PL  IIG
Sbjct: 410 YQ--NEDVAICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIG 467

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +LL++    + N + ++ ++ +  SS++LL +++DILD + +++  +K++        
Sbjct: 468 NLELLQSL---TQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQ 524

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++ V  +    + + ++ I    +  +   V  D  R+ Q+ S +L+N++ F++ G  +
Sbjct: 525 VVSFVISNYLPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-CI 583

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFIN 766
            L   RD     F + + G  I E M   +F  F   +   +    G GLGL+I E  IN
Sbjct: 584 TLHLYRDEYYLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLIN 643

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           L  G +S+ S +   +    RIP 
Sbjct: 644 LMDGDISVVSQENVGSRFTVRIPL 667


>gi|197285590|ref|YP_002151462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis HI4320]
 gi|194683077|emb|CAR43602.1| two component system, [includes both sensor kinase and response
           regulator domains] (capsular synthesis regulator
           component C) [Proteus mirabilis HI4320]
          Length = 942

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 169/384 (44%), Gaps = 33/384 (8%)

Query: 413 IWMFEN--LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKT 469
           +W+FE    +   +  ++     +   + +     G+++    DG I LSN         
Sbjct: 334 VWIFERKIFSPAENNASRLEEHEQFNHKIVASAPVGISILRIRDGMIILSN--------- 384

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                        +A    R  + SD  ++ + I     +    +      L  S +   
Sbjct: 385 ------------ELAHNYFRLLSHSDKQNILSIIAEKSSNIVDVVTNNHNHLQISFVNSR 432

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                    +   V+++  V+ ER+L     A  +A++ K+ F+  VS+ELR+PL  IIG
Sbjct: 433 YQ--NEDVAICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIG 490

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +LL++    + N + ++ ++ +  SS++LL +++DILD + +++  +K++        
Sbjct: 491 NLELLQSL---TQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQ 547

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++ V  +    + + ++ I    +  +   V  D  R+ Q+ S +L+N++ F++ G  +
Sbjct: 548 VVSFVISNYLPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-CI 606

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFIN 766
            L   RD     F + + G  I E M   +F  F   +   +    G GLGL+I E  IN
Sbjct: 607 TLHLYRDEYYLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLIN 666

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           L  G +S+ S +   +    RIP 
Sbjct: 667 LMDGDISVVSQENVGSRFTVRIPL 690


>gi|332526490|ref|ZP_08402602.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332110758|gb|EGJ10935.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 669

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 168/392 (42%), Gaps = 17/392 (4%)

Query: 406 SNPRGGTIWMFENLT-VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             P      + + +T +Q  L+ +     +   E +  +++G  V   DGRI + NPA+ 
Sbjct: 197 PGPANELHALADGITGLQRALQHQLALQTRQFDEVLRRMADGAGVVDADGRIVVCNPAWA 256

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLS 522
           ++        + G       A  +    ++    L  A     +D   R++  GTL   +
Sbjct: 257 AMLGAAGPAQALGLP---ATAWLAEPSWDTLAARLAQAGTLPAEDLSLRRADGGTLATEA 313

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              +         A+  L   +V+     ER L    EA   A   K+ F+ ++S+E+R+
Sbjct: 314 SFAVFARADAGAPARVQLVLRDVSARRETERTLVAAREAAEAATRAKSDFLANMSHEIRT 373

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  I+G T L   ++   L+ +Q  Y+E   A++  LL +VN ILD + ++AG ++L +
Sbjct: 374 PMNAILGMTALALRTE---LDPRQRDYLEKTRAAAQSLLGIVNVILDFSKIEAGRLELEH 430

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
               L+ +L+ V   +A + H+  +   +    ++    V D  RL Q+   +  NA+ F
Sbjct: 431 DEFELDAVLDGVAAIVALQAHDRGLGFLLDVSEQVPRRLVGDALRLSQVLVNLCGNAVKF 490

Query: 702 SSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           S +G  ++   A D  D       F V + G  +     + +F  F        RR  G 
Sbjct: 491 SERGEVLVRVEALDAADPHLQRLRFVVHDEGIGLSPQDLERLFRPFSQVDASTTRRYGGT 550

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           GLGL+I    +   GG +++ SS    +    
Sbjct: 551 GLGLAISRQLVQAMGGDIAVRSSPGRGSEFAF 582



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 48/158 (30%), Gaps = 27/158 (17%)

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---- 338
             + G  G+   +  ++ +  Q     E+L  +     + D +  +   N ++  +    
Sbjct: 205 ALADGITGLQRALQHQLAL--QTRQFDEVLRRMADGAGVVDADGRIVVCNPAWAAMLGAA 262

Query: 339 -----WEIDLAFLATNPSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTW 392
                  +        PS D L   L  A  LP E L+ +           ++E     +
Sbjct: 263 GPAQALGLPATAWLAEPSWDTLAARLAQAGTLPAEDLSLRRADGGTL----ATEASFAVF 318

Query: 393 HLPN-GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
              + G    V            +  +++ + + E   
Sbjct: 319 ARADAGAPARVQ----------LVLRDVSARRETERTL 346


>gi|315181980|gb|ADT88893.1| PAS/PAC sensor hybrid histidine kinase [Vibrio furnissii NCTC
           11218]
          Length = 1190

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/403 (22%), Positives = 162/403 (40%), Gaps = 37/403 (9%)

Query: 411 GTIWMFEN------LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           G I  F N      +  +   E   +  ++     I+ +   + V     ++   N  + 
Sbjct: 543 GIISTFWNRRLAQQVKERQAAENSLSAQLQFMQSLINGIPHPIYVRDNQLKLVTCNSQYY 602

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
            ++   +   + GT  + +          ESD   +         D    + G     S+
Sbjct: 603 QVFGL-DRASAIGTTPQEVKKNLQEAVKFESDYQQVIRTGEPILVDRTLHVAG-----SE 656

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             + + I P  +A      V       ++R   +  E L +A + K +F+  +S+E+R+P
Sbjct: 657 LSIYHWIEPYKDAAGHCLGVICGWIDVSDR--RDLIEQLTQASKAKTTFLATMSHEIRTP 714

Query: 584 LTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           +  IIG  ++ +K S  G  +      +E    S+  L  L+ DILD+  +++G + +  
Sbjct: 715 MNAIIGLLEIAIKKSHQGHFDVPA---LEVAYDSAHNLQVLIGDILDIVRIESGHISIAP 771

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
             + L DL+  + +       +  I++ V  D  +      D  RL QI S +LSNA+ F
Sbjct: 772 QRVNLRDLVESITRVFDGLARQKYIQLDVHIDPTITQDVYVDPTRLKQILSNLLSNAIKF 831

Query: 702 SSKGSTVILKAARDN----------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           + +G  V +                        + F VK+ G+ I E+    +F  FV  
Sbjct: 832 TDQGG-VTVTVTNHGPSETTFTEPEQQGSIAERYSFVVKDTGTGISEEAQPRLFAPFVQV 890

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                R+G GLGLSIV+S  N+ GG +++ S     T I   +
Sbjct: 891 HSDVDRQGTGLGLSIVQSLCNMMGGTIALCSEVGVGTQIEVSL 933



 Score = 41.1 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 21/152 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ E       LS  +   + L + +   ++ RD    ++  N  Y +     G+  
Sbjct: 553 LAQQVKERQAAENSLSAQLQFMQSLINGIPHPIYVRDNQLKLVTCNSQYYQ---VFGLDR 609

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV------------- 280
             AIG + +  K+ +++ +   S  ++        L     ++  +              
Sbjct: 610 ASAIGTTPQEVKKNLQEAVKFESDYQQVIRTGEPILVD---RTLHVAGSELSIYHWIEPY 666

Query: 281 --RVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
                +  G     IDVS    + +QLT   +
Sbjct: 667 KDAAGHCLGVICGWIDVSDRRDLIEQLTQASK 698



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 62/161 (38%), Gaps = 20/161 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E +++ QL     +++ +   I + D    L   N  + +++ +D A  A   +  E+
Sbjct: 562 AAENSLSAQLQFMQSLINGIPHPIYVRDNQLKLVTCNSQYYQVFGLDRA-SAIGTTPQEV 620

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNPRG--- 410
            + L+ A K         ++ +   V ++ E      T H+  G  L +     P     
Sbjct: 621 KKNLQEAVK---------FESDYQQVIRTGEPILVDRTLHVA-GSELSIYHWIEPYKDAA 670

Query: 411 ----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
               G I  + +++ + DL  +     K +   +  +S  +
Sbjct: 671 GHCLGVICGWIDVSDRRDLIEQLTQASKAKTTFLATMSHEI 711


>gi|258509807|ref|YP_003172558.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|257149734|emb|CAR88707.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|259651070|dbj|BAI43232.1| two-component sensor kinase [Lactobacillus rhamnosus GG]
          Length = 636

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 150/406 (36%), Gaps = 45/406 (11%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   + +   + +    + H+++GV      G + + N    S   
Sbjct: 240 GQLAVAVNNLSVRVEEAQEASEAERRRLDSVLAHMTDGVIATDRRGNVIIINQTALSFLN 299

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T+   +  G  I  +      Y       DL         D  + L   L L     +++
Sbjct: 300 TKNEDV-IGVSILKLLNIAKDY----TLRDLLEHQTELLLDFSEQLDHDLILR----VDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    +           K D  +  FV +VS+ELR+PLT++ 
Sbjct: 351 SLIQRETGFISGLVAVLHDVTEQQ-----------KIDRDRKEFVSNVSHELRTPLTSVR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             Q++      +  ++ ++ND+L L+ +D+G  K N  T+ LN
Sbjct: 400 SYIEALSDGAWKD-PKLAPQFLNVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLN 458

Query: 649 DLLNEVKQSI---------------------ATKMHENNIRIKVISDGKLGSFVADRQRL 687
           +  N V                              +    IK     +      D  + 
Sbjct: 459 EFFNYVLDRFDMMLKTDNEHTGEARTAQPLPQPDGQKKRYSIKREITHEDLWVEIDTDKF 518

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
           +Q+   I++NA+ +S  G  +  +  + +   I S+ + G  IP      +F+RF     
Sbjct: 519 MQVIDNIMNNAIKYSPDGGVITARLFQMHDHVILSISDQGLGIPRQDLGKIFDRFYRVDK 578

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++ G GLGL+I +  +    G + + S +   +T    +P +
Sbjct: 579 ARSRKQGGTGLGLAISKEVVEALHGRIWVDSQEGRGSTFYISLPYE 624


>gi|153836688|ref|ZP_01989355.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810]
 gi|149750037|gb|EDM60782.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810]
          Length = 785

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 7/266 (2%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +++ L  +        + +  +    L  + +   +A + K+SF+  +S+ELR+P+  +
Sbjct: 229 VAVMLLVGSFLYQLQYRMHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGV 288

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G + L+       +     ++++ I  S   L+ ++NDILD + V+   ++L  +   L
Sbjct: 289 LGISQLIAEETKEPVT---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEKAPFHL 345

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +L  V  +I   + E +I + V +D      F  D  RL QI   +  NA+ F+++G 
Sbjct: 346 EQVLTPVCSAIQPLIDEKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNEGH 405

Query: 707 T-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             +  +   ++   +  V + G  I  D    VFN F        RR  G GLGL+IV+ 
Sbjct: 406 VLIRTELNGEDKQLLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKK 465

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              L GG +++ S +   T     +P
Sbjct: 466 LTELMGGSITLKSVEGVGTQFIVTLP 491


>gi|326317598|ref|YP_004235270.1| signal transduction histidine kinase with CheB and CheR activity
            [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374434|gb|ADX46703.1| signal transduction histidine kinase with CheB and CheR activity
            [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1534

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/652 (16%), Positives = 225/652 (34%), Gaps = 55/652 (8%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
              E   K  +L +  S  + L D+        D+   I     S             + +
Sbjct: 754  NHELKSKVDELGHANSDMQNLMDATAIATVFLDRDLRITRFTPSAVTLFNLIATDVGRPL 813

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA----- 292
               R   +                  E       GN   Y +  +     +  IA     
Sbjct: 814  SHLRTQLQYPELSEDARRVLERLALVEREVGASDGN--WYLVRMLPYRTLDDRIAGVVLT 871

Query: 293  -IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             +D+S+     + L  + +    I++   V +   + + ++ F NR +  +       L 
Sbjct: 872  FVDISERKQGQEALRRSEDRFSAIVNQAVVGVVQTELDGHITFVNRHYSHMLGYGHDELI 931

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHL-PNGQTLH---- 401
                  +LL+ +          + +     +  + +  E  H +   L  +G TL     
Sbjct: 932  G----TQLLDLIH-------PADRQLSAHLMRRLAEHGEPFHIEKRCLRKDGSTLWLHNS 980

Query: 402  VIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIK 457
            V   ++  GG   +I +  +++ +   E       +     I++  E  +     D RI 
Sbjct: 981  VSYLADAHGGPTASIVVCNDISERKRAENALRESTERLRLVIENAVEYAIFSTDLDRRIT 1040

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQ 515
              N     +    EN  + G     I     R           A       D+R  +   
Sbjct: 1041 TWNSGAERILGYSENE-AVGQLADMIFTPEDRAAGAPLSETSTALATGGALDDRLHQRKD 1099

Query: 516  GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI------- 568
            G+    S +++            +    + +D   +++AL +    L KA          
Sbjct: 1100 GSRFWASGALMPMHDDADTVVGFVKILRDQSDQRASQQALEQSRADLLKALRENEEARAA 1159

Query: 569  -------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                   K+ F+  +S+ELR+PL +I G + +L T    + +  Q+     +   +  + 
Sbjct: 1160 LQAADATKDRFLAVLSHELRNPLASIAGASAVLATEGAATGDRDQA--ARIVQRQARAMA 1217

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             L++D++DL+ +  G M L    + L++++    ++    +                  +
Sbjct: 1218 VLLDDLMDLSRLRLGRMVLQQREVPLDEIVEAALEATLGAIRAAGHDFVQELPADTVMLL 1277

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            AD  R+ Q+ + +LSNA  ++     + L A  + G     V++NG  +  +    +F  
Sbjct: 1278 ADPVRIAQVLANLLSNAAKYTPDHGRIRLSAWTEGGSIYLRVEDNGIGMDPETVDDMFTM 1337

Query: 742  FVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
            F  +        +G+G+GL++V + + +H G V   S+     +    ++P 
Sbjct: 1338 FSQSPDAGMRHTQGLGIGLALVRNIVEMHQGTVRGESAGPGQGSRFTVQLPL 1389



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 89/301 (29%), Gaps = 34/301 (11%)

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            RI  +   + +++E     + L      F  + +     V   +  G I + N  Y    
Sbjct: 864  RIAGVVLTFVDISERKQGQEALRRSEDRFSAIVNQAVVGVVQTELDGHITFVNRHYSHML 923

Query: 227  ETEGIVFQKAIGESRKLFKEEIKKR-----MISSSALEKNFC-ETVSTLEHGNNKSYK-- 278
               G    + IG           ++     M   +   + F  E     + G+       
Sbjct: 924  ---GYGHDELIGTQLLDLIHPADRQLSAHLMRRLAEHGEPFHIEKRCLRKDGSTLWLHNS 980

Query: 279  IVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILH-NLTVAI--AIF--DQNRYLQ 329
            +  + ++ G    +I    D+S+     + L  + E L   +  A+  AIF  D +R + 
Sbjct: 981  VSYLADAHGGPTASIVVCNDISERKRAENALRESTERLRLVIENAVEYAIFSTDLDRRIT 1040

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
              N     +            S +E +  L      PE            +   +     
Sbjct: 1041 TWNSGAERILGY---------SENEAVGQLADMIFTPEDRAAGAPLSETSTALATGGALD 1091

Query: 390  DTWH-LPNGQTLHVIVT---SNPRGGTIWMFENL-TVQVDLETKYNTLVKVQGETIDHLS 444
            D  H   +G            +    T+  F  +   Q D       L + + + +  L 
Sbjct: 1092 DRLHQRKDGSRFWASGALMPMHDDADTVVGFVKILRDQSDQRASQQALEQSRADLLKALR 1151

Query: 445  E 445
            E
Sbjct: 1152 E 1152


>gi|237809486|ref|YP_002893926.1| hybrid sensory histidine kinase BarA [Tolumonas auensis DSM 9187]
 gi|237501747|gb|ACQ94340.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 908

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 138/322 (42%), Gaps = 14/322 (4%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQ 537
           I  I       Y+  +G  L   +    D E   L+  +  ++ ++ EY   +    +  
Sbjct: 201 IEPINRMVRAVYHIREG-RLDTRVRGKMDGELDMLKNGINAMAKAISEYHNEMQQSIDQA 259

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      +         L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT  L  +
Sbjct: 260 TSDLRETLEQIEIQNVELDMAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQLFKT 319

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+  Q  Y+  I  S+  LL+++NDILD + ++AG + L      + +++N+    
Sbjct: 320 Q---LSLHQRDYLSTIEHSAKNLLSIINDILDFSKLEAGKLTLENIPFNIREMINDTVTL 376

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
           +A   H+  + + ++    +   V  D  RL QI + I+ NA+ F+ +G   + +     
Sbjct: 377 LAPSAHDKKLELSLLVSQPIPDLVAGDPLRLQQIITNIVGNAIKFTEQGMVNIHVSTTPS 436

Query: 716 NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
                    F +++ G  + ++    +F  F+        +  G GLGL I +  I    
Sbjct: 437 IDQQKVLLRFRIRDTGIGMDDEQLMRLFQPFIQGDSSISRRYGGTGLGLVISQKLIEQMD 496

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + + S     +     +P +
Sbjct: 497 GSMQVHSEPNQGSEFTITMPLE 518


>gi|146309198|ref|YP_001189663.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577399|gb|ABP86931.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 783

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 167/417 (40%), Gaps = 8/417 (1%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV--DLETKYNTLVKVQGE 438
           V++  +  ++   L  GQ L     +    G +        Q+  + E       +    
Sbjct: 214 VHRVQQVERNARRLALGQPLIPQGPAADEIGQLAASLEEAGQLLAERERALRDNEERLRL 273

Query: 439 TIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            ID + E G+    P G +   N     +    E  +                       
Sbjct: 274 IIDGVKEYGIFGLDPSGHVTSWNTGAERIKGYSEADILGRHFSLFYPPQARDTAPYLALQ 333

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
                     +  R+   G+L   +  +                  ++TD   AE AL  
Sbjct: 334 AATREGRYEEEAWRQRRDGSLFWANVVITAQRDASGTLRGFSKITRDITDRRNAEAALRT 393

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E    A   K+ F+  +S+ELR+PL +I+GF  LL+  +       Q   V +I  + 
Sbjct: 394 AREEAENASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDRG---TPAQQAQVRHILRAG 450

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GK 676
             LL L+N++LD+A +++G + L+   + L  LL EV   ++ +    +IR+++  +   
Sbjct: 451 RHLLGLINEVLDIARIESGRLALSPEPLPLRPLLQEVSLLLSPQADSADIRLRLPEELPA 510

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                ADRQRL+Q+   +LSNA+ ++  G  V ++   D+     SV +NG  I  +  +
Sbjct: 511 ELCVQADRQRLVQVLLNLLSNAIKYNHPGGHVEVRVQADSDTVTLSVIDNGPGIAAEDLE 570

Query: 737 SVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F  F    A   +  G GLGL++ +S +    G + + S+    +T +  +P  +
Sbjct: 571 RLFIPFERLGAAASEVEGTGLGLALSKSLLEQMDGSLGVHSTPGEGSTFSLTLPRAQ 627


>gi|148509171|gb|ABQ81808.1| GacS [Pseudomonas alkylphenolia]
          Length = 917

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S++ LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   + +  ++
Sbjct: 327 EKSASSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V      +           V++ G 
Sbjct: 387 YRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVTRAMLEEEHGDSVQLRICVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWV 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|148977989|ref|ZP_01814541.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145962809|gb|EDK28082.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 1224

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 132/279 (47%), Gaps = 13/279 (4%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T  L    V+ ++II L     +L     +       +L E  +    A++ K+ F+ ++
Sbjct: 431 TFHLAVGGVIFFAIILL---MGLLANKAHSALEAFAHSLAEARDEADAANQAKSDFLANM 487

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  IIG + L   +    L   Q  Y+  +  SS  LL L+NDILD + ++AG
Sbjct: 488 SHEIRTPMNAIIGMSYLALKT---DLTKAQRNYIHKVKLSSDTLLGLINDILDFSKIEAG 544

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            + +      L ++L+ +   +  +  E  + + +  D  + +  + D  RL QI   + 
Sbjct: 545 KLDIENVDFHLENVLDNITNLVGLRASERGLELLIQVDRDVPTNLIGDPLRLGQILINLS 604

Query: 696 SNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           +NA+ F+ KG   + +  A  +GD     FSV ++G  + ++    +FN+F        R
Sbjct: 605 NNAVKFTEKGEVKISILVAERHGDDIKLKFSVSDSGIGMTQEQADKLFNKFTQADSSTTR 664

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGL+I +    L GG + +S+     +T +  I
Sbjct: 665 KYGGTGLGLAISKELSQLMGGDIQVSTELGKGSTFSFTI 703


>gi|91714551|gb|ABE54477.1| Hpt sensor hybrid histidine kinase [Shewanella denitrificans OS217]
          Length = 972

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 153/367 (41%), Gaps = 19/367 (5%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L+  +   ++     +A F     I L    F +L+ T          I  +    ++  
Sbjct: 213 LLNKENALLEQHRAAIAAF----VIVLIGVQF-NLFFTFRLVKHVNFPITEMVRVVAKIR 267

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                  L   +I   D  ++ +      LS+   E           +   +   +    
Sbjct: 268 EGKLDARLDGNLIGELDLLKRGINAMAGSLSEYHDEMQQNIDQATFDLRETLEQIEIQNV 327

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYV 610
           E  L    +  ++A +IK+ F+ ++S+ELR+PL  +IGF   L+KT     L++ Q  Y+
Sbjct: 328 E--LDLAKKRAQEASQIKSEFLANMSHELRTPLNGVIGFARQLIKT----PLHASQLDYI 381

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S+T LL ++NDILD + ++AG M+L      L + + E    IA       + + 
Sbjct: 382 KTIDRSATNLLGIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELV 441

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFIF--SVKN 725
           +  D  +   V  D  R+ QI + ++ NA+ F+  GS V  ++  A  +        V +
Sbjct: 442 IDIDENVPEHVSGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVID 501

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +   + +F  F        RR  G GLGL I +  IN  GG +  +SS E  + 
Sbjct: 502 TGIGIDDSQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSN 561

Query: 784 INCRIPS 790
               +P 
Sbjct: 562 FWFILPL 568


>gi|73538299|ref|YP_298666.1| PAS [Ralstonia eutropha JMP134]
 gi|72121636|gb|AAZ63822.1| PAS [Ralstonia eutropha JMP134]
          Length = 679

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 150/375 (40%), Gaps = 16/375 (4%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             +    + +    +D +   V V     R+   N  +  L       L  G        
Sbjct: 108 TARLRQRLTLHTAVLDSIPLPVYVRDAQQRLITCNRRYEELVGASRASLR-GLPPDMPEQ 166

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT---- 541
                 + ++  + +  +I S     K     ++     VL + + PL      +T    
Sbjct: 167 LAGVITDAAELSEDYRDVIASGRALSKDRCLHIQGEKRHVLNW-VAPLQGPGKTVTALAG 225

Query: 542 -FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            +V++T+       L E       A+  K++F+  VS+E+R+P+  + G  +L    K  
Sbjct: 226 GWVDLTERHDMLAQLAEAKARAEAANRAKSTFLASVSHEIRTPMNAVAGMIELAL--KRP 283

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            + S + + +     S+  LL L++DILDL+ ++AG ++++     L  L+ EV Q +  
Sbjct: 284 EMPSDERRMLSTAHDSALALLALIDDILDLSKMEAGKLRVHPVPASLPALVEEVLQMLGP 343

Query: 661 KMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARD 715
              +  + +  + D  +  + + D  R+ Q+   ++SNA+ F+ KG   V L        
Sbjct: 344 VAAQKPLPLVPVVDPGIAAAHMVDPLRVKQVLGNLVSNAIRFTDKGEVRVHLHGGPVHAG 403

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVS 773
             + + +V + G  I       +F  F     R   Q  G GLGL+I    +   GG + 
Sbjct: 404 KQEIVLTVADTGIGIAHADQARLFQPFEQAHDRSRPQSGGTGLGLAICRRLVAAMGGQIR 463

Query: 774 ISSSDEGVTTINCRI 788
           + S     T++   +
Sbjct: 464 LESRAGAGTSVRVTL 478



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 12/144 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  +LA +     +L   +++   + DS+   V+ RD    ++  N  Y++         
Sbjct: 97  LRRQLARSQACTARLRQRLTLHTAVLDSIPLPVYVRDAQQRLITCNRRYEELVGASRASL 156

Query: 234 QKAIGESRKLFKEEIKKRM------ISSSALEKNFCETVSTLEHGN-NKSYKIVRVLNSF 286
           +    +  +     I              A  +   +       G        V  L   
Sbjct: 157 RGLPPDMPEQLAGVITDAAELSEDYRDVIASGRALSKDRCLHIQGEKRHVLNWVAPLQGP 216

Query: 287 GEAGIA-----IDVSKEITVNDQL 305
           G+   A     +D+++   +  QL
Sbjct: 217 GKTVTALAGGWVDLTERHDMLAQL 240



 Score = 44.5 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 9/136 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN--DELL 356
             +  +LT    +L ++ + + + D  + L   NR + EL     A L   P +  ++L 
Sbjct: 109 ARLRQRLTLHTAVLDSIPLPVYVRDAQQRLITCNRRYEELVGASRASLRGLPPDMPEQLA 168

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM- 415
             +  A +L E            S  +      +  H+ N     V     P      + 
Sbjct: 169 GVITDAAELSEDYRDVIASGRALSKDRCLHIQGEKRHVLN----WVAPLQGPGKTVTALA 224

Query: 416 --FENLTVQVDLETKY 429
             + +LT + D+  + 
Sbjct: 225 GGWVDLTERHDMLAQL 240


>gi|229043318|ref|ZP_04191038.1| hypothetical protein bcere0027_13700 [Bacillus cereus AH676]
 gi|228726032|gb|EEL77269.1| hypothetical protein bcere0027_13700 [Bacillus cereus AH676]
          Length = 591

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V   G +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKGPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDMKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|168029047|ref|XP_001767038.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162681780|gb|EDQ68204.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 330

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD++K+ F+ ++S+E+R+PL  II  T+L   ++    + +Q +Y++ +  S+  LL +
Sbjct: 1   QADKMKSQFLANMSHEIRTPLNGIINCTELCLDTR---TSPEQQEYLDLVRFSAKHLLRI 57

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           + DILD + ++AG +++      L D L      +A + ++  + +    D  +    + 
Sbjct: 58  ITDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARANKKGLELACQVDHTVPDQIIG 117

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL Q+F  ++ N++ F+++G  ++    +    DN + +FSV++ G  IP+     +
Sbjct: 118 DPGRLFQVFVNLIGNSIKFTAEGEVIVSAMVKSRNGDNIELLFSVRDTGIGIPKQKQSLL 177

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F  F        R   G GLGL I        GG + + S     +T +  
Sbjct: 178 FQAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGTMWVESE-GKGSTFSFT 227


>gi|110639274|ref|YP_679483.1| PAS/PAC sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
            33406]
 gi|110281955|gb|ABG60141.1| PAS/PAC sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
            33406]
          Length = 1324

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/652 (17%), Positives = 260/652 (39%), Gaps = 59/652 (9%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE------- 229
            +++E     + L +    ++ + +++   +   +     L+ N +  K+ ET        
Sbjct: 410  DISERKRTEQALQDQKQFYEDILNNIPSDIAVFNTNYQYLYVNPAAIKDEETRKWIIGKT 469

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN-----NKSYKIVRVLN 284
             + + +  G+   L     K   I     +    E V T + GN      K + ++   +
Sbjct: 470  DLDYCRYRGKDDSLAIMRRKNHDILHEFKKPIEWEDVFTDKDGNVSYVLRKFHPVLDEND 529

Query: 285  -SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                  G  I++++   V ++L  + E+                L  H  +   +W+ D+
Sbjct: 530  NIKIIIGNGINITEIKQVQEKLAKSEELY--------------RLVIH-AANDGIWDWDI 574

Query: 344  A----FLATNP------SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            A    +L+         +++ L   + S  K     +    KE + + ++  + +  T  
Sbjct: 575  ASGSLYLSERWKSMLGYTDETLANHISSWEKTMHPDDLSIAKEILQNHFEKRKPYNYTLR 634

Query: 394  LP--NGQTLHVIVT----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                +G    ++       N +G     +    ++T     E K     +      +H  
Sbjct: 635  YLHVDGSIRWIMCRGFAIRNRKGEPYRMVGSCTDVTDTQIAEEKLKENEEKLQAIFNHSH 694

Query: 445  EGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            +   +  P   +I   N     L++T++        + ++          +D  + F  +
Sbjct: 695  DAKFLVDPCTNKIIEFNKRTLELFETDKPDTLYTIPLTSLRKYPLTDAELADTQNQFKQL 754

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
               ++ E   +         +++  +I        ++   +++++ + E+ L +  +   
Sbjct: 755  -GYWNQEVLYITQKKNEFWGNIVAKTIFINKKEVILVRITDISENKKIEQELIKAKQIAE 813

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            ++ + K  F+ ++S+E+R+P+  I+G  +L+  +   SL+  Q ++V+ I  S+  LL +
Sbjct: 814  ESTKAKEMFLANMSHEIRTPMNGILGMAELISRT---SLDVTQKKHVQLIKNSADNLLII 870

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVA 682
            +NDILD+A +++G + +      + +++    Q++  K  E  I + +          + 
Sbjct: 871  INDILDIAKIESGKLTIEQIPFDICEVIKSAIQTLTYKAEEKGIDLIIHPIKLDHRVVIG 930

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            D  RL Q    +++NA+ F+  GS  I      ++  +  F F+VK+ G  IP++   S+
Sbjct: 931  DPFRLTQALLNLINNAIKFTENGSVEISGRIPHSSSTDITFEFTVKDTGIGIPQEKLDSI 990

Query: 739  FNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F  F         +  G GLGL+I ++ I + GG++ + S     +     I
Sbjct: 991  FEGFTQASPDTSRKYGGTGLGLTISKNLIQMQGGNIWVESVVGKGSKFIFSI 1042



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 97/292 (33%), Gaps = 25/292 (8%)

Query: 192 ISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
           I             +      G +++AN +         ++       +  +  + +   
Sbjct: 193 IESLSRFPKESPNPILRCSADGMVIYANAA---AKPFVSVLSTTKYNSNNNVTYDSLVSN 249

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
           + +S          +       +++Y +  V V +       A D++      +++    
Sbjct: 250 VKASFKTRMLLKNEIRI----KDRTYNVSYVPVEHEDYVNIYATDITSTKESEEKIYLLK 305

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           E+L+ L   I + D+     F N S    ++             E  E L   N +P   
Sbjct: 306 ELLNQLDEFIQVIDKEGNFVFINESSANRFQ----------RTIEEFETLNIKNIVPSFY 355

Query: 370 NWKTWKENI-FSVYKSSETHKDTWHLPNGQTLHVI-----VTSNPRGGTIWMFENLTVQV 423
           N  TW+E   F   K +   + T   P+  +  +       T + +   I   ++++ + 
Sbjct: 356 NNMTWEEQFDFFKQKQNFLLESTHTKPDKTSYPIESSVKYTTVHEKEYIISFSKDISERK 415

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             E       +   + ++++   +AVF  + +    NPA     +T +  + 
Sbjct: 416 RTEQALQDQKQFYEDILNNIPSDIAVFNTNYQYLYVNPAAIKDEETRKWIIG 467



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 116/294 (39%), Gaps = 39/294 (13%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA---FLATNPS 351
           + KE  +    +    ++ NL  AI + D+NR +   N+ F +++ I L+    + T+ S
Sbjct: 58  IRKEQDLLSNSSRLSSLIVNLDSAILLEDENRKIVLVNQKFCDIFGIPLSPQELIGTDCS 117

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-KDTWHLPNGQTLH----VIVTS 406
           N      ++         N   +   I  + ++ +    D   L +G+ L      +  +
Sbjct: 118 NSAQQSKIK-------FKNPDQFISRIEELLENKKKVLSDELQLIDGKILKRDFIPVYHN 170

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           N   G +W +E+LT  ++++ K  +L +   E+       +     DG +  +N A +  
Sbjct: 171 NEYLGHLWNYEDLTNYINVKKKIESLSRFPKES----PNPILRCSADGMVIYANAAAK-- 224

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                          ++ +T     N +  +D   + + +    R  L+  +  + D   
Sbjct: 225 ------------PFVSVLSTTKYNSNNNVTYDSLVSNVKASFKTRMLLKNEI-RIKDRTY 271

Query: 527 EYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             S +P+ +   +  +  ++T +  +E  +    E L + DE    F+Q +  E
Sbjct: 272 NVSYVPVEHEDYVNIYATDITSTKESEEKIYLLKELLNQLDE----FIQVIDKE 321


>gi|29347984|ref|NP_811487.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339886|gb|AAO77681.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 419

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 184/379 (48%), Gaps = 32/379 (8%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-----ENRLSPGTHIRN-IAATC 487
           K     + +++    +   D  + + N  + +L         E R+    H RN I A  
Sbjct: 40  KELTSILQNINVYYLLIDRD--LIVHNTNYYTLNHLTPAQGEEKRVGDLLHCRNAIVAGE 97

Query: 488 SRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLP----------- 534
              + +     +  +I  +F ++R  K L  +++LLS+   E ++IP             
Sbjct: 98  CGKHEQCKLCCIRTSISKAFYEKRSFKKLDASMQLLSED--EKTVIPCDVSVSGTYLKIN 155

Query: 535 -NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              + +LT  +VT+    +R L  + E    AD++K++F+ ++S+E+R+PL  IIGF+ L
Sbjct: 156 GEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIIGFSGL 215

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           + T    +   ++  Y + IS ++  LL LVNDI DL+ +DAG++   YS    NDLL E
Sbjct: 216 MAT---ATSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRE 272

Query: 654 VKQSIATKMHENNI-RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++     +++EN +  +   +  +     +++QR++Q+ + +L NAM F+  G  +    
Sbjct: 273 LEGLFGMRLNENPLVTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKTGE-IRFGC 331

Query: 713 ARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             +   +  F V + G  IP++  + +F+RF       + +G GLGL++ ++ ++  GG 
Sbjct: 332 RMEGTDEVYFYVSDTGIGIPKEEQEKIFSRFTKLD--REMQGTGLGLTLSQTIVHNLGGR 389

Query: 772 VSISSSDEGVTTINCRIPS 790
             + S     +T    +P 
Sbjct: 390 FGVESEVGKGSTFLFILPL 408


>gi|88858301|ref|ZP_01132943.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
 gi|88819918|gb|EAR29731.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
          Length = 884

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 136/310 (43%), Gaps = 9/310 (2%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQTMLT 541
               +   +     DL   +    +DE  SL      +   +  Y   +           
Sbjct: 322 LEMLAEASHRVGDGDLKILLPIEREDEMGSLFQDFNHMVSQIRHYQGQLEDYKEHLEEKV 381

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +  +    L +      +A ++K+ F+ ++S+E+R+PLT I+GFT+ + T +   
Sbjct: 382 AARTHELAKMNHQLEKAMNQAEQASQLKSRFLANMSHEIRTPLTAIMGFTEQMLTKE--- 438

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + K++Q++  +  +S  LL L+N+ILDL+ ++A  +++    + L+ L+ ++   +   
Sbjct: 439 PDDKKAQHLNTVLRNSKHLLELINNILDLSKIEAEKLEVERQPLELSQLIEDINSVVHVL 498

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF 719
             + N+   V  D  L  +  +D  RL Q+   + +NA+ F+++GS  + + A       
Sbjct: 499 AQDKNLTFAVEYDYPLPRTLNSDITRLKQVLLNVCTNAVKFTAEGSVTLAISAKHSLSQL 558

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  +     + +F  F        R   G GLGL I ++   L GG ++++S 
Sbjct: 559 EFKVQDTGIGMSNQELERIFKPFEQADSSTTRKFGGTGLGLCISKNLAQLLGGDITVTSK 618

Query: 778 DEGVTTINCR 787
               +     
Sbjct: 619 QTQGSCFLIT 628


>gi|294667725|ref|ZP_06732937.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602565|gb|EFF46004.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 769

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 10/250 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q 
Sbjct: 90  HGELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQR 146

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +
Sbjct: 147 DMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQL 206

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFS 722
           R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      F 
Sbjct: 207 RLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQ 266

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S    
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 781 VTTINCRIPS 790
            +T    IP 
Sbjct: 327 GSTFWFEIPL 336


>gi|269795552|ref|YP_003315007.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269097737|gb|ACZ22173.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 576

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 163/379 (43%), Gaps = 11/379 (2%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENR-LSPGT 478
                ET+   + +      D ++E  +      GRI   NP    +    ++  L  G 
Sbjct: 197 EARSSETRATAVSRQLSGLWDAVTEQAIIGTDLTGRIDSWNPGACKMLGVAQHEALEAGL 256

Query: 479 HIRNI---AATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            I ++        R     D   L A A +T+   +       +   +    + S +P+ 
Sbjct: 257 VITDVHVAEELRERVAAVGDSTPLDAQAALTALVRDVGPGSADVREWTYVRPDDSRLPVQ 316

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A T     +         A        R+ + +K+ FV  +S+ELR+PL++I+G+ +LL
Sbjct: 317 VAATQRIGDDDAVVGYLFVATDMTK--AREFERLKDEFVGMISHELRTPLSSILGYLELL 374

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +  + G L ++Q+QY++    ++  LL LV D+L  A V+AG   + + +  L  +L   
Sbjct: 375 RDEEDGPLTAEQTQYLDVAERNAQRLLRLVGDLLFTAQVEAGRFPIVHQSTELESVLRAA 434

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+        ++R++V+ D  L + V  D  RL Q    +LSNA+ FS  G  V L   
Sbjct: 435 AQTFEPVAAAASVRLRVVMDESLSTVVRGDATRLGQAVDNLLSNAVKFSPAGGQVTLSLV 494

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
             +     +V++ G  IP+     +  RF   +        G+GLGL+I ++ +  H G 
Sbjct: 495 AHDERATITVRDTGIGIPDTELDQLTTRFFRASTATSASVPGIGLGLAITKAIVVAHRGR 554

Query: 772 VSISSSDEGVTTINCRIPS 790
           + ++S     T     +P+
Sbjct: 555 LDVTSEVGIGTAFTVDLPT 573


>gi|167628755|ref|YP_001679254.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167591495|gb|ABZ83243.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
          Length = 940

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 7/241 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    E    A   K+ F+  +S+E+R+P+  ++G  +LL+ +    L+ +Q +YV  +
Sbjct: 414 ALARAKEEADLASRAKSDFLATMSHEIRTPMNGMLGMLELLEAT---PLDEEQREYVSVV 470

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S +LL+L+ND+LDL+ ++ G + L         +   +   I        +      
Sbjct: 471 RDCSNLLLSLINDVLDLSRIEKGAVSLEEKDFETKSMKRYLVSLIEPMAARKGLDFVSEF 530

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +   +  D  RL Q+   +L+NA+ F++KG  + L+A     +  F V++ G  I E
Sbjct: 531 SPSVPPVLRGDPVRLRQVLLNLLNNAVKFTAKG-CITLRAYVTGNEITFEVEDTGPGILE 589

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++  S+F  F            G GLGLSI    + L GG +S  ++    +     +P 
Sbjct: 590 EIRGSIFKPFTRGHSGTDSMHGGAGLGLSICRRLVELMGGGISFETTAGVGSLFRFTVPL 649

Query: 791 K 791
           K
Sbjct: 650 K 650


>gi|313681453|ref|YP_004059191.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154313|gb|ADR32991.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 1088

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 156/395 (39%), Gaps = 36/395 (9%)

Query: 415 MFENLTVQVDL------ETKYNTLV----KVQGETIDHLSEG--VAVFGPDGRIKLSNPA 462
           +F ++T +           KY T       +  E ID +++   + +   D R  +    
Sbjct: 249 LFLDITTERTAILQASTTGKYETQSGIWFAMISEKIDAINDAEKILIDAMDERASIVKSQ 308

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              +     +    G  I  +            G+   A I T+  +    L+   E   
Sbjct: 309 AVQVLAIAISIWILGVIIAIL------------GYFFSAEITTNIKNLESVLKRVAEDTH 356

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D+  E     +       T        R         +   +A E K+ F+ ++S+E+R+
Sbjct: 357 DNEAEALRHTINLDTAAGTAQAYALLERIIEQTLNDKQYAMEASEAKSMFLANMSHEIRT 416

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GFT+LLK ++   L+ +Q ++++ I  SS  LL ++N+ILDL+ +++  +++  
Sbjct: 417 PLNGIVGFTELLKDTE---LHDEQREFIDIIEKSSENLLEIINNILDLSKIESNKLEIEE 473

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
                 D      +    +  E +I +    D  L      D  ++ ++   +LSNA+ F
Sbjct: 474 IVFNPIDEFESAVEVYGVRASEKHIDLACYVDPSLERPLKGDPTKIKEVIINLLSNAVKF 533

Query: 702 SSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRG 753
           ++ G  + +   R      +     F VK+NG  +  +    +F  F         +  G
Sbjct: 534 TNSGGAISVDIRRIECEILNRTRIRFQVKDNGIGVTSEQRSRIFEAFSQADTSITRKYGG 593

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL+I   F+ L G  + + S     T+    +
Sbjct: 594 TGLGLTISSRFVELMGSKLDLESEPGNGTSFFFTL 628


>gi|288870015|ref|ZP_06112594.2| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288868794|gb|EFD01093.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 975

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 116/566 (20%), Positives = 214/566 (37%), Gaps = 70/566 (12%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF--DQNRYLQF 330
           +++ + +     +F     A+D +K+     Q     ++ H L   I  F  D    +  
Sbjct: 145 DDELFPVESGREAFERLKSALD-TKKQEYEHQTRFLEQLYHTLPCGILQFSTDPAHTIIS 203

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL---NWKTWKENIFSVYK-SSE 386
            N    + +  D                 R A   P Q      + W   +      + E
Sbjct: 204 VNPMVWKFYGYDSE------------AEYREAVSNPLQKVDLQDQEWISTLLDRLTLNGE 251

Query: 387 THKDTWH--LPNGQTLHV------IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           +     H    +G+   +      I+ SN       +F ++T Q+ LE       + Q  
Sbjct: 252 SASYRRHCIRRDGEEAWINVVMGRIINSNGMEVIQAVFTDITEQMRLEQA-----QEQER 306

Query: 439 TIDH--LSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +++  L   +    P   I   N         L + EE +LSP      + A+C     
Sbjct: 307 VLENRFLRAAICTAYP--LIVSVNLTQDTYHCFLNEQEEYQLSPDGCFTELYASCIPEIY 364

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD----------SVLEYSIIPLPNAQTMLTF 542
            S   D FA+  +    +R+   G  E+  +            L    I + N       
Sbjct: 365 SSYQAD-FASTFSPEALQRRFSAGEQEIYMELQGQGQDGKYHWLSLHAIAVENPFNDDVL 423

Query: 543 VNV---------TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                        +  R E+ L +   + + A   K+ F+  +S+++R+P+  IIG + +
Sbjct: 424 TICLVKFLDELRQEQARQEQLLRDALASAQAASRAKSDFLSRMSHDIRTPMNAIIGMSTI 483

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            +     S   K     + I  SS  LL+L+NDILD++ ++   M++ +        + E
Sbjct: 484 GQIKLHDSRTVK--DCFQKIDTSSKYLLSLINDILDMSRIETDKMEIAHDLFDFRAFVEE 541

Query: 654 VKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           + Q I  +  E  I  ++   +     ++ D  R+ QI   +LSNA+ F+  G +V +  
Sbjct: 542 INQIIYPQTLEREIAYEMRHLEPLESHYIGDSLRMKQILMNLLSNALKFTQPGGSVSVDI 601

Query: 713 ARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           A +          F +++NG  + E+    +F  F   A  +     G GLGLSIV S +
Sbjct: 602 AEEKRTNGYAYIKFVIEDNGIGMSEEFMDRLFQPFEQEAPGNARNNVGSGLGLSIVYSLV 661

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L GG +S++S  +  +     +P +
Sbjct: 662 QLMGGTISVTSHKQEGSRFTVTVPFQ 687


>gi|148545406|ref|YP_001265508.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida F1]
 gi|148509464|gb|ABQ76324.1| Alginate biosynthesis sensor protein KinB [Pseudomonas putida F1]
          Length = 593

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 149/372 (40%), Gaps = 24/372 (6%)

Query: 422 QVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +    T  + L+   +     +D + +G+ +    GR++  NP  +      +       
Sbjct: 241 RKHQATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWND------- 293

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537
               + ++        +       ++     +R      +E+  +  +L YS+ P+ + Q
Sbjct: 294 --SRVGSSLVEALQRPELEQQLRQVLRGGSLDRPPDDLNMEVDDESRLLTYSLTPVSHPQ 351

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    +      E+            + +++ FV   S+ELR+P+T +     LL+  
Sbjct: 352 GPILGAVMVLHDVTEQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLRER 402

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 ++++  +E I      L  L+ND+L+ +   +G+ KL  +   ++DLL   +  
Sbjct: 403 VKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLEHAQLR 462

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A       I +    D  L    AD  +L ++   +L NA+  ++ G  + L A R   
Sbjct: 463 FAEHAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHAE 522

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I SV++NG  I       +F  FV      ++ G GLGL++ +  + LHGG + + S 
Sbjct: 523 RVIISVEDNGEGISYGQQARIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVFSR 580

Query: 778 DEGVTTINCRIP 789
               T     +P
Sbjct: 581 PGQGTQFYMALP 592



 Score = 38.0 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 26/197 (13%)

Query: 241 RKLFKEEIKKRMISSSALEK-NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI 299
            + F + I+    ++  L K NF  T+   +        + ++   FG    A+   +  
Sbjct: 192 ARRFGQPIEALAKAADQLGKGNFDVTLPVTQAAE-----LNQLTRRFGLMADALRKHQAT 246

Query: 300 TVNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            V++ L        +L ++   + I D+   L+  N                  ++  + 
Sbjct: 247 NVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQR---------QLGWNDSRVG 297

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ---TLHVIVTSNPRG--- 410
             L  A + PE    +  ++ +               + +     T  +   S+P+G   
Sbjct: 298 SSLVEALQRPELE--QQLRQVLRGGSLDRPPDDLNMEVDDESRLLTYSLTPVSHPQGPIL 355

Query: 411 GTIWMFENLTVQVDLET 427
           G + +  ++T Q   E 
Sbjct: 356 GAVMVLHDVTEQRAFER 372


>gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
 gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
          Length = 933

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 205/568 (36%), Gaps = 57/568 (10%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L    +++     +  E+      +  +   +  Y I            A+         
Sbjct: 144 LRDMPVERDAALKALHERINKYRNAPQDDRGSNLYWISEGPRPGVGYFYALTPVYLANRL 203

Query: 303 DQLTHTYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             L    + +          L + + I D+N +            E +  ++        
Sbjct: 204 QALLGVEQTIRMDNFFLPGTLPMGVTILDENGHTLISLTGAESKIEAEPRWMQERSWFGY 263

Query: 355 L--LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
                 L     LP       +   +  V +          + N   L+VI      G  
Sbjct: 264 TPGFRELVLKKNLPPSSLSIVYSVPVDQVLERIR-----MLILNAILLNVIA-----GAA 313

Query: 413 IWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRS 465
           ++    +  +           +     +   + +     G+ +    DG   LSN     
Sbjct: 314 LFTLARMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICILRTVDGVNILSN----E 369

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L  T  N L+     R     C +  N       F  ++TS +    +LQ +        
Sbjct: 370 LAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRN 419

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
              +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL 
Sbjct: 420 ENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLY 470

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+     
Sbjct: 471 GIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREF 527

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
              +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  
Sbjct: 528 SPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT 587

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G  ++L    +       V++ G  IP      +F+ F       +   +G GLGL+I E
Sbjct: 588 G-CIVLHVRVEGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICE 646

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
             I++  G +S+ S     +    RIP 
Sbjct: 647 KLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|150008008|ref|YP_001302751.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936432|gb|ABR43129.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 508

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 227/525 (43%), Gaps = 56/525 (10%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIF------DQNRYLQFHNRSFVELWEIDLAFL 346
           ++ ++  T+         +L N+  ++ I+        N    + +    +L+      +
Sbjct: 9   VNTTENKTLEQDYRDLAGLLSNIVDSLPIYFFVKDTGDNFRYVYSSPLMNQLYGRYHNDV 68

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNG--QTLHV 402
                 D  L+           +  +++++    V K+ +  +    +  P G  +T+  
Sbjct: 69  VGKTDFDLFLD----------PVVAQSFRDMDEEVVKTGKMQRFVEQMIDPKGILRTMDT 118

Query: 403 IVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           +    PR       + +  ++T Q  +E + ++  K            +A+    G+I  
Sbjct: 119 MKLLAPREDKPPYLVGISWDITKQRQVEEELHSYNKR-----------LALACQAGKIYP 167

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAIITSF-DDERKSLQ 515
               +  +  T E  L     I+++  T + +      D   ++  I T+F   E  S++
Sbjct: 168 W--LWDLVNGTAELSLEENGQIKHVQITHASFTEKIHPDYRKVYENITTAFMRGEIDSMR 225

Query: 516 GTL--ELLSDSVLEYSII-----PLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKAD 566
            +      SD  +    I       P+ + + +   + D    +   A  +      ++D
Sbjct: 226 FSFPCRYFSDEYVWLEKIGEVYEADPDGKPIRSIGILRDMTVDKRHEADVQAKRLAEESD 285

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL  S        + +Y+  I +S+  LL L+ D
Sbjct: 286 RMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEE---KKEYLRIIESSNEFLLQLIGD 342

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ +++G M+  Y+T+ L+++    +Q+ A ++    +++   SDG     V+++ R
Sbjct: 343 ILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAP-GVKVIFESDGNDYCIVSEKTR 401

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+ +  LSNA+ F+S GS +       +      V + G  I ++   S+FNRFV   
Sbjct: 402 LTQVLTNFLSNAVKFTSSGS-IRFGYRLTDDGIYVYVTDTGMGISKESQASIFNRFVKLN 460

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 461 SF--KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 503


>gi|262383010|ref|ZP_06076147.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295888|gb|EEY83819.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 732

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 168/384 (43%), Gaps = 25/384 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +++L   Y  L +     +D  +     +     +   +        ++ + L      
Sbjct: 349 RELELMKDYRALSRKLSLALDVANIIPWRWDLRAHLIFCD---IQCSNSDLSNLEQPMPK 405

Query: 481 RNIAATCSRYYNESDGWD----------LFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           R++  +  +Y+++    D          L    I    +E    +      +   +E   
Sbjct: 406 RSLEISEEKYFSKIRKSDRERLRSVCEALIRGDIDKVKEEFLIYRSGRSNPNFDWIEVQA 465

Query: 531 IPLPNAQTML------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I     +         + + +T+  R E  L    +   +++ +K++F+ ++S+E+R+PL
Sbjct: 466 IVEKRDERGYPIVLTGSSLRITERKRIEEELLRARDKAEESNRLKSTFLANMSHEIRTPL 525

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ +L T+       ++ Q+V  I +++ +LL L+ DILDL+ ++AG ++   + 
Sbjct: 526 NAIVGFSQILTTT---DDEEEKKQFVSIIESNNVLLLQLIGDILDLSKIEAGTLEFVRNE 582

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + LN L+NE++ S+  K+ +  + ++            D+ RL Q+   +L+NAM F+ +
Sbjct: 583 VDLNVLMNELESSMRLKIAD-TVELRFTDRMPSCRLYVDKNRLSQVLINLLTNAMKFTKE 641

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G         D     F V + G  IP++  +++F RF+   +     G GLGLSI +  
Sbjct: 642 GYIHFGYRLVDEDTLEFYVSDTGCGIPKEQLRNIFERFIKLNNFVS--GTGLGLSICQVI 699

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           +   GG + + S +    T    I
Sbjct: 700 VERMGGRIWVESDEGKGATFFFTI 723


>gi|45358683|ref|NP_988240.1| ATPase-like ATP-binding protein [Methanococcus maripaludis S2]
 gi|45047549|emb|CAF30676.1| ATP-binding protein, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal:Bacterial sensor
           protein C-term [Methanococcus maripaludis S2]
          Length = 614

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 4/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + L++ D +K+  +  VS+ELR+PLT I+G+ +LLK    G L+ KQ +++  IS
Sbjct: 377 LKTSFDELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVIS 436

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S  L  + +++ DL TVD  I+ +    I L   +N++ +S        NI +  + D
Sbjct: 437 ENSDRLKRITDNMSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVL--LED 494

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   D+ ++ Q+ S ++ NA+ FS K + V +    D G+    + + G  IP++ 
Sbjct: 495 VDNLDIKGDKSKIHQVLSNLIENAIKFSKKQTKVTVMGFEDKGNIHLEITDQGPGIPKEH 554

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F++F       +R   G GLGL++ +  +  HGG + + S     TT++   P 
Sbjct: 555 LGKIFDKFYQIDSSSKREVGGSGLGLAVCKKIVESHGGSIWVESKIGKGTTVHVMFPL 612


>gi|332524176|ref|ZP_08400403.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107512|gb|EGJ08736.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 650

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 157/395 (39%), Gaps = 22/395 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             E L    +     +   +      D L   V  +  D R + +N A+   +     ++
Sbjct: 116 THERLRQLAEERDTLSEHERFMRAIADALPGMVGYWDADLRCRFANIAYLEWFGRTPRQV 175

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G  ++++        NE       A     F        G+      S +   +    
Sbjct: 176 L-GMRMQDLLGEELFRANERHIRGALAGEEQRFQRTMTRADGSTGYTLASYIPDRVDGRV 234

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNI 587
               ++   +++D  RAE  L   N  L +           K++F+ ++S+E+R+P+  I
Sbjct: 235 RGFNVIV-ADISDVKRAEIELERLNVQLVQRAAEADAATRAKSAFLANMSHEIRTPMNAI 293

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T LL      + + +Q   +  +  ++  LL +V+DILDL+ ++AG + L      L
Sbjct: 294 IGLTHLLAR---DATDDQQRSRLAKVDGAARHLLQVVSDILDLSKIEAGKLSLEREEFRL 350

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++L      + TK  E  + + V +       + D  RL Q+   +L+NA+ F+ +G  
Sbjct: 351 DEVLERSLSMVRTKAAEKGLELDVDTTPLPERLIGDPTRLAQVLINLLANAVRFTDRGGV 410

Query: 708 VI--LKAARDNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            +   +  RD       F V+++G  I  D    +F  F    +   RR  G GLGL++ 
Sbjct: 411 RLHGRELWRDEHRLLARFEVQDSGPGIAPDQLGRLFEAFDQGDNSATRRHGGTGLGLALT 470

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR----IPSKE 792
             F  L GG   + S     +T        +P  E
Sbjct: 471 RRFATLMGGEAGVDSRLGEGSTFWVSAEFGLPPPE 505



 Score = 41.1 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 13/147 (8%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NT 226
           D  +  L +   +   LS H    + + D+L  +V + D      +ANI+Y +       
Sbjct: 114 DDTHERLRQLAEERDTLSEHERFMRAIADALPGMVGYWDADLRCRFANIAYLEWFGRTPR 173

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-----KIVR 281
           +  G+  Q  +GE  +LF+   +    + +  E+ F  T++  +     +        V 
Sbjct: 174 QVLGMRMQDLLGE--ELFRANERHIRGALAGEEQRFQRTMTRADGSTGYTLASYIPDRVD 231

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHT 308
                    +A D+S       +L   
Sbjct: 232 GRVRGFNVIVA-DISDVKRAEIELERL 257



 Score = 39.5 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 48/145 (33%), Gaps = 16/145 (11%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             +  T+++       I   L   +  +D +   +F N +++E +      +        
Sbjct: 124 AEERDTLSEHERFMRAIADALPGMVGYWDADLRCRFANIAYLEWFGRTPRQVLG------ 177

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----- 409
               +R  + L E+L     +    ++    +  + T    +G T + + +  P      
Sbjct: 178 ----MRMQDLLGEELFRANERHIRGALAGEEQRFQRTMTRADGSTGYTLASYIPDRVDGR 233

Query: 410 -GGTIWMFENLTVQVDLETKYNTLV 433
             G   +  +++     E +   L 
Sbjct: 234 VRGFNVIVADISDVKRAEIELERLN 258


>gi|258623945|ref|ZP_05718898.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603]
 gi|258583739|gb|EEW08535.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603]
          Length = 857

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/495 (18%), Positives = 191/495 (38%), Gaps = 50/495 (10%)

Query: 325 NRYLQFHNRSFVELWEIDLAFLATN--PSNDELLEFLRSANKLPEQLNWKTWKENIF--- 379
           +  +   N +  + + +   FL     P+   +     + N L  + N+  W        
Sbjct: 233 DYVMNSANDAMNDSFIVGQTFLDVEGVPTYLCVYSIQPNKNVLTLRDNFYFWMAFALVSM 292

Query: 380 -------SVYKSSETHKDTWHLPN--GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
                    +       +   L +   + + +   S   G  I+ F+       LE  + 
Sbjct: 293 IAVSIASRWWLQKRIQSEIETLMSYTHKLMELDTKSQFAGSKIYEFDYFG--RTLEQSFR 350

Query: 431 TL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            L    K   +  +       ++   GR+   NP+ +               ++ +    
Sbjct: 351 RLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQ---------------VQFLREDA 395

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLTFVNVT 546
             ++           +IT     +   + T E+    V  +++ P+    Q +       
Sbjct: 396 QNHFLFEILERQLLPMITYAAQGKNPSEVTTEV-DGRVYRWNLSPIMVEGQIISIITQGQ 454

Query: 547 D---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +    L 
Sbjct: 455 DVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PLT 511

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V  + +S   LL ++NDILD + ++ G  ++  S   L +L+  + +      +
Sbjct: 512 DEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCN 571

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  I + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + +      GD    
Sbjct: 572 DKGIELVVESNITSATLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPLAQ 630

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            +  V + G  I E+    +F  F+       R   G GLGL+IV S + +  G + +SS
Sbjct: 631 LVIQVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSS 690

Query: 777 SDEGVTTINCRIPSK 791
                T    ++P +
Sbjct: 691 EYGHGTRFEIQLPIE 705


>gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [marine bacterium
           HP15]
          Length = 902

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 26/268 (9%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +   A+            A   K+ F+ ++S+E+R+P+  +IG++DLL  S     + +Q
Sbjct: 531 ELRAAKLEAERLAREAEAASLAKSEFLANMSHEIRTPMNAVIGYSDLLSNSV---TDPQQ 587

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ I A S  LL L+NDILDL+ ++AG M+L+YS + +  LL++V+     +  E  
Sbjct: 588 RNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLDYSAVSVRRLLDDVRHIFDLRAREQG 647

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------------- 712
           I ++V  D ++  + + D  RL Q+   ++ NA+ F+  G  V ++A             
Sbjct: 648 ITLEVSVDSRMPGAMMLDETRLRQVLFNLVGNAIKFTHDGG-VTVRATAKPLKKRSAEAE 706

Query: 713 ------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
                  R     I +V ++G  IP D  + +F+ F      +  +  G GLGL+I    
Sbjct: 707 QNPEAPERQYYKLIVTVSDSGIGIPPDQVERIFDAFEQQEGQNTRRYGGTGLGLAISRKL 766

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
             + GG + + S     +     +P  E
Sbjct: 767 ARMMGGELEVESEQGSGSVFTVTLPRVE 794


>gi|307688976|ref|ZP_07631422.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 673

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 170/381 (44%), Gaps = 22/381 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +  + K  +  K+  + ++ + +GV V   + +I+ +N  F ++ + ++        I
Sbjct: 270 ELIKAKDKVQSTEKLYNKFVNFIPDGVLVI-RNKKIEFANNTFLNMLQVDDKDKLVNMSI 328

Query: 481 RNIAATCSRYYNESDGWDLFAAIIT-------SFDDERKSLQGTLELLSDSVLEYSIIPL 533
            ++         +S    L   ++         + D++K ++ +  +++D   EY I   
Sbjct: 329 FDVVDDSFHDILKSRINVLREKVLEVPQQYIFMWKDKKKWVEVSSLIVNDEGGEYMIS-- 386

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               T+ +  +   +  AE+ L    E   K +++KN F  ++S+ELR+P+  I     +
Sbjct: 387 ----TLRSIEDKKKAEEAEQLL----ELKGKEEKMKNDFFTNISHELRTPINVIYSALQV 438

Query: 594 LKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
                     ++   +Y   I  +   L+ L+N+++D+  ++    + N+ +  +  ++ 
Sbjct: 439 ENDYLKNDTKAEVIIKYNRIIRQNCLRLMRLINNLIDITRIETSFFEPNFQSGNIITIVE 498

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++  SI   +   NI +   ++ +      D   + +I   +LSNA+ +  +G  + +  
Sbjct: 499 DITMSIVQYIESKNISLIFDTEIEESYVKFDPDLIERIVLNLLSNAVKYGREGGNIEVYM 558

Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
             ++      S+K++G  IP++  + +F+RF  V  +   +  G G+GL++V+  + +H 
Sbjct: 559 YENSAKSIAISIKDDGIGIPDEKKERIFDRFLKVDASLSRKTEGSGIGLALVKQLVEIHQ 618

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +  +S     T     +P+
Sbjct: 619 GTIVFNSKLNQGTEFIITLPT 639


>gi|322435323|ref|YP_004217535.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321163050|gb|ADW68755.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 458

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 156/385 (40%), Gaps = 38/385 (9%)

Query: 420 TVQVDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           T    ++    T  + +      +D + + V      GRI+ +N   + +       L P
Sbjct: 92  TASKRVQGSLETAAESRRQLEALLDSMQDAVVAVDAAGRIQWTNERMQKM------MLLP 145

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G +                  D+   +  + +D   +++ +  L+   + E +  P+P  
Sbjct: 146 GGYFTGAVRVGHALVQTVRDPDVLECVRVALEDTAVAVRRSTSLVPGRIYEVNASPMPGG 205

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +VT     ER               +  FV +VS+ELR+PLT+I G+ + L  
Sbjct: 206 GAVAVLHDVTRIEEVER--------------TQKDFVANVSHELRTPLTSITGYVETLLD 251

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            + G ++ +  +++  I  ++T +  L  D+L +A V+A  ++L+ + +  + L+ E   
Sbjct: 252 HEAG-ISPQGREFLGTILKNATRMNRLTEDLLVMARVEAATVELSPAPVPADLLVREAVA 310

Query: 657 SIATKMHENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK----GSTVIL 710
            +   + EN   + I  I+D       AD   ++Q+ S ++ NA+ +       G+ V++
Sbjct: 311 GMKGLVQENEGVLEIGTITD---CQVFADHDAVMQVLSNLIENAIKYGQPKAGGGTRVVI 367

Query: 711 KAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
            A           FSV++ G  I  +    +F RF        R   G GLGLSIV   +
Sbjct: 368 SAREVAAPYDAVEFSVRDFGQGIASEHLNRIFERFYRVDKTRSRESGGTGLGLSIVRHMV 427

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG +   S     +     +P 
Sbjct: 428 QAQGGTIRAESELGEGSCFLFTLPK 452



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 64/211 (30%), Gaps = 23/211 (10%)

Query: 260 KNFCETVSTLEHGNNK----SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL 315
                + +++  G  K     ++    L                T  +       +L ++
Sbjct: 59  GPMQASANSMIEGEQKPLTTGFRDFDGLAQALSTASKRVQGSLETAAESRRQLEALLDSM 118

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
             A+   D    +Q+ N    ++  +   +             L    + P+ L      
Sbjct: 119 QDAVVAVDAAGRIQWTNERMQKMMLLPGGYFTGAVRVGH---ALVQTVRDPDVLEC---- 171

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-------- 427
               ++  ++   + +  L  G+   V  +  P GG + +  ++T   ++E         
Sbjct: 172 -VRVALEDTAVAVRRSTSLVPGRIYEVNASPMPGGGAVAVLHDVTRIEEVERTQKDFVAN 230

Query: 428 ---KYNTLVKVQGETIDHLSEGVAVFGPDGR 455
              +  T +      ++ L +  A   P GR
Sbjct: 231 VSHELRTPLTSITGYVETLLDHEAGISPQGR 261



 Score = 41.5 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 11/145 (7%)

Query: 168 ILSLDGIYSELA----ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
               DG+   L+          +  +      + L DS+   V   D AG I W N   +
Sbjct: 80  FRDFDGLAQALSTASKRVQGSLETAAESRRQLEALLDSMQDAVVAVDAAGRIQWTNERMQ 139

Query: 224 KNTETEGIVFQKAIGESRKLF----KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
           K     G  F  A+     L       ++ + +  +           ++L  G  + Y++
Sbjct: 140 KMMLLPGGYFTGAVRVGHALVQTVRDPDVLECVRVALEDTAVAVRRSTSLVPG--RIYEV 197

Query: 280 VRVLNSFGEA-GIAIDVSKEITVND 303
                  G A  +  DV++   V  
Sbjct: 198 NASPMPGGGAVAVLHDVTRIEEVER 222


>gi|298487166|ref|ZP_07005215.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158190|gb|EFH99261.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1172

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + + S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLADQSQA--LADQRDALDRNNEELSIAQAELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPGENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEM 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +F V+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +  +  +P
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717


>gi|312110945|ref|YP_003989261.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311216046|gb|ADP74650.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 456

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 137/324 (42%), Gaps = 9/324 (2%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           K           I+N+      ++       +F  IIT     R  +   L  +  +  +
Sbjct: 138 KGYVYMFQNTDSIQNMIDKLKHHFMMVGILSVFLTIITIALLSR-IITIPLIRMKQATEK 196

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S         +     + +  +A + L    E L+K    +N F+  +S+ELR+PLT +
Sbjct: 197 LSKGDFSVHLQVKGEDELAELGKAIQTLARDLEYLKK---ERNEFLASISHELRTPLTYV 253

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G+ D+ + S +G    ++++Y+  I   +  +  LV D+ +LA +D    +++     L
Sbjct: 254 KGYADIARRSNMG--EEERNRYLSIIYEEAEHMQKLVKDLFELAKMDQHSFQIHKELTNL 311

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
                ++   +        + +    DG + +   D++R  Q+   +L NA+ +S +GS 
Sbjct: 312 CSFFKKLHDKMQPAFQAKKMSLVYYCDGSI-TVHIDQKRFEQVMMNLLDNALKYSDQGSI 370

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           V +   ++    +  V + G  IP++    +F RF        R   G GLGL+IV+  +
Sbjct: 371 VSIDVRKEKHHIVIIVSDEGRGIPKEDLPHIFERFYRVDKSRSRTSGGTGLGLAIVKEIV 430

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             HGG +  +S     T +   +P
Sbjct: 431 EAHGGAIYAASEYGKGTNMIITLP 454


>gi|17231257|ref|NP_487805.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132899|dbj|BAB75464.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 443

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 144/326 (44%), Gaps = 12/326 (3%)

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPN 535
           G +I+      +   +E    +L  A  T +  + +    TL ++L +++  Y       
Sbjct: 74  GLNIKIPLVVLTSQGDEQIAVELMKAGATDYLSKFRVSSETLAQVLRNAIRLYRAEMQTT 133

Query: 536 AQTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPLTNII 588
                   +    VR  + L  +       N  L +A  +K+ F+  +S+ELR+P+  II
Sbjct: 134 IAYQQLRESHEQLVRKNQELERQRQQIQIQNLKLLEASRLKSQFLATMSHELRTPMNAII 193

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF  +L   K G+L  +Q+  VE I  +   LL L+N++LD + ++ G ++L      L 
Sbjct: 194 GFAQILSRPKFGNLTGQQADMVERILNNGKHLLMLLNEVLDFSKLEEGRLELKPELFDLT 253

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++N V   + +      + + V  D +    V D  R+ QI   +LSNA+ F+  GS +
Sbjct: 254 KVINAVVMEMRSLAEAKKLSLLVQIDLQNSLLVNDPVRIKQILINLLSNAIKFTDSGS-I 312

Query: 709 ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            +      G ++   VK+ G  I     K +F  F        R+  G GLGL+I++S +
Sbjct: 313 WIDVKDLPGSWVEIKVKDTGIGIAAKDFKYIFEAFRQVDQSITRKYPGTGLGLAIIDSLV 372

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            +  G + + S     +     +P +
Sbjct: 373 QMMSGKIFLESQLGVGSIFTITLPRQ 398


>gi|294627247|ref|ZP_06705834.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598486|gb|EFF42636.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 769

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 10/250 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q 
Sbjct: 90  HGELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQR 146

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +
Sbjct: 147 DMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQL 206

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFS 722
           R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      F 
Sbjct: 207 RLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQ 266

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S    
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 781 VTTINCRIPS 790
            +T    IP 
Sbjct: 327 GSTFWFEIPL 336


>gi|290476633|ref|YP_003469538.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004]
 gi|289175971|emb|CBJ82774.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004]
          Length = 791

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/310 (25%), Positives = 147/310 (47%), Gaps = 14/310 (4%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTD 547
           R   +     L   +  +   E  +LQ  +  +++S+ +Y   + L   Q         +
Sbjct: 218 RVVEQIRQGQLNIRVTGAMPGELAALQNGINTVAESLSKYKDEMQLHIDQATSDLQITME 277

Query: 548 SVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSK 605
            +  +   LT   +  ++A +IK  F+ ++S+ELR+PL  +IGFT  +LKT     + S+
Sbjct: 278 QLEIQNVELTLAKKRAQEAVKIKTEFLANMSHELRTPLNGVIGFTRQMLKT----PITSQ 333

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q++Y+  I  S+  LL ++NDILD + +++  + L+    +L D +NEV + +     E 
Sbjct: 334 QAEYLYVIERSANNLLKIINDILDFSRLESNKLVLDQVPFLLRDTVNEVIELLTPVASEK 393

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI--- 720
           N+ ++   D KL +  + D  RL QI + ++ NA+ F+ KGS ++ ++  +     +   
Sbjct: 394 NLPLQHRIDDKLPNLMIGDPIRLQQILTNLIGNAIKFTDKGSVILEVRLRQQQHHLVQID 453

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F++ + G  I  +    +F  F        R   G GLGLSI +  +N   G +   S  
Sbjct: 454 FTITDTGIGIKPEYRPILFQAFNQADASITRHYGGTGLGLSITKRLVNEMKGEIDFISEP 513

Query: 779 EGVTTINCRI 788
              T     +
Sbjct: 514 AKGTVFYFDL 523


>gi|281206650|gb|EFA80836.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1688

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 155/337 (45%), Gaps = 25/337 (7%)

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELL-SDSVLEYSII 531
              H+  +     +    ++         + F+ E   RK   G L ++    V+  S+ 
Sbjct: 483 NMKHLTQLIHPEDKERFIAEIKKTIIRETSIFEIECRMRKKTGGYLYIIMRGKVVSESLT 542

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                +   T  +VT     +R L  + EA  +A++ K++FV  VS+E+R+PL+ +IG +
Sbjct: 543 KDSQLRMAGTLRDVTSRKDMQR-LILEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVS 601

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLL  +    LN +Q  YV+ I  SS  LL ++NDILD + +++  +K+      + +  
Sbjct: 602 DLLLETV---LNEEQRDYVQTIQKSSQALLTIINDILDYSKLESKQLKMETIPFSIIETG 658

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--- 707
             V   ++     +++ +       +   V  D  R+ Q+   ++SNA+ F+S G     
Sbjct: 659 QAVIYMLSV-ATNDDVDLLFRVPPNVPDVVIGDAMRVRQVLLNLVSNAIKFTSHGHVLCD 717

Query: 708 VIL--------KAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + +         +  DN      +V++ G  IP+ + +++F  F    +   R   G GL
Sbjct: 718 ISVVESLNPLHSSRSDNTIHLCITVEDTGIGIPQSLFEAIFEPFSQADNSTTRKYGGTGL 777

Query: 757 GLSIVESFI-NLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLSI +  I  + GG + +SS+    +T  C IP K+
Sbjct: 778 GLSITKRLIEEVMGGTIHVSSTVGLGSTFKCTIPFKK 814


>gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 927

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +  +K   L + Q+ Y++ I
Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK---LTNSQADYLQTI 331

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + + +  
Sbjct: 332 EKSANNLLNIINDILDFSKLEAGKLALENIPFEFQETLEEVVSLQATSAHEKGLELTLKV 391

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGS 728
           D K+ +  V D  R+ Q+ + ++ N++ F+ +G+    V L++ +++  +  F V++ G 
Sbjct: 392 DPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDAVELQFMVRDTGI 451

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T   
Sbjct: 452 GISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWF 511

Query: 787 RI 788
            +
Sbjct: 512 TL 513


>gi|219851326|ref|YP_002465758.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219545585|gb|ACL16035.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 929

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/659 (16%), Positives = 240/659 (36%), Gaps = 74/659 (11%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF---- 244
           +   + ++ L  +    +   D A  ++  N   ++     G   ++ +G          
Sbjct: 285 AEAETRYRQLIQTAVDAIIVLDPAFRVILWNTGAERL---YGYTSEEMVGSPISCIFPFE 341

Query: 245 -KEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIVRVLNS------FGEAGIAIDVS 296
            KEEI  ++      E     ET    + G+ +   +             G + IA D++
Sbjct: 342 QKEEILHQLEKIRQGETIERVETERVTKDGSRRLISLSLSPILSSDGDFIGISDIAHDIT 401

Query: 297 KEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +     +++             +   IAI D++  +   NR+  +   I    +      
Sbjct: 402 ERQRFQNEILKAKNRWERTFDAVPDMIAIVDKHFRIVQVNRAMADSIGISPEEVVGMTCY 461

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-- 410
           + +          P Q   + ++ +   +++ +              L V    +P G  
Sbjct: 462 EVIHHSSTPPTICPHQKLLQDYQSHSTDLHEDTSNKDF--------FLTVSPIQDPLGNV 513

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGE--------------------TIDHL---SEG 446
            G++ +  ++T +   E       +   E                    T + +   SE 
Sbjct: 514 RGSVHILRDITERKRAEEALIRSNEELNELNEELTATEEEMKMNNEELMTAEKMLRESEA 573

Query: 447 VAVFGPD----GRIK--LSNP-AFRSL-------WKTEENRLSPGTHIRNIAATCSRYYN 492
                 D    G +   + N  ++RSL       +KT  +  +    I ++         
Sbjct: 574 RLALALDISGMGTLDCDMVNHTSWRSLRHDQIFGYKTPPSTWNLKIFIDHVLPEDQEMVR 633

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           +       +     F+   +   G +  +  + L          + +   +++T+  + E
Sbjct: 634 KIFSDAFASQSDWRFECRIRRTDGEIRWIEKTGLGQYDDAGRPLRVLGLLLDITERKQFE 693

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
               +  E L  ++E    +    S++L+ PL +I+ F+ LL     G L+    +Y+++
Sbjct: 694 TTQKKYAEKLMASNEELQRYAYVASHDLQEPLRSIVSFSQLLDRRYRGKLDKDADEYIKF 753

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      +  L+ D+L ++ ++     L  +    N ++ +  +S+ T +H+NN R+ V 
Sbjct: 754 IVDGGVRMQALIKDLLQVSRIETQAQPL--APTDANAVVADSIRSLKTPIHDNNARVTVD 811

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSSI 730
               L   +AD  +L QIF+ ++ NA+ +        + + A R    + FSV++NG  I
Sbjct: 812 ---PLPIVMADPSQLEQIFTNLIGNAIKYHRPEMPPAITVSAERHGNWWEFSVRDNGIGI 868

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +    +F  F       +  G G+GL+IV+  +  HGG + I S     +T    +P
Sbjct: 869 KAEFFDRIFEMFRRLHTIDEYEGTGIGLAIVKKIVERHGGRIRIESELGEGSTFFFTLP 927



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 2/165 (1%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           N++ Q  L   +        + I    + + V  P  R+ L N     L+      +  G
Sbjct: 273 NVSDQEMLTRFFAEAETRYRQLIQTAVDAIIVLDPAFRVILWNTGAERLYGYTSEEM-VG 331

Query: 478 THIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           + I  I     +         +     I   + ER +  G+  L+S S+           
Sbjct: 332 SPISCIFPFEQKEEILHQLEKIRQGETIERVETERVTKDGSRRLISLSLSPILSSDGDFI 391

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  ++T+  R +  + +      +  +     +  V    R
Sbjct: 392 GISDIAHDITERQRFQNEILKAKNRWERTFDAVPDMIAIVDKHFR 436


>gi|15893728|ref|NP_347077.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023292|gb|AAK78417.1|AE007558_7 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325507851|gb|ADZ19487.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 637

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/506 (18%), Positives = 206/506 (40%), Gaps = 40/506 (7%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           +     I+ ++   + I ++N      N+   E +               + E ++  NK
Sbjct: 124 IQFIDRIIDSIPFLVIIKNENGKHIKVNKEAREFYG--------------VKEEIKKDNK 169

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--QTLHVIVTS----NPRGGTIWMFEN 418
           L ++ N+           +SS+T  +     +   +TL+VI       N    T+ +  +
Sbjct: 170 L-DKYNYSELNNLKIES-ESSKTFCEQVLNKDNEERTLYVIAIPVTINNNEKFTVIIKSD 227

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T       +     +        + E + +   + ++   N   + L+  E+ +   G 
Sbjct: 228 IT--KFQNNQIENNGENLKNLFKSVPEAIFIHD-NTKVIYLNKVAKELFGCEKLQEIIGK 284

Query: 479 H------IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                  I+NI+       N ++     A I+ + D+    ++  +E       E  ++ 
Sbjct: 285 DYTNLIKIQNISEDKKSNLNGTEYNIRSAEIVRTCDNRVLKVEFLVEKYLYRDKEIELVV 344

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + + +            R        N+ L  ++  K  F+  +S+ELR+PL  I+    
Sbjct: 345 VWDME--YKTKMEELKNRMSEKNDFLNKVLYYSN-AKTQFMGTISHELRTPLNIILSALQ 401

Query: 593 LL-KTSKLGSLNSKQSQYVEY---ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           ++   +  G L  K   Y +Y   +  +   LL ++N+ +D+  ++ G  KLN+    + 
Sbjct: 402 VMDLYANYGDLEEKCRVYEKYSVVMKQNGYRLLKMINNFMDITQIEDGARKLNFVQGNIV 461

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            ++ +V  ++A  + +    I   +D +    + D++++ +I   +LSNA+ F+ K + +
Sbjct: 462 TIVEDVTLAVAAFLKDKGKNIIFDTDVEEKIMIFDKEKIERIVLNLLSNAVKFTGKDANI 521

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
            +       +   SV++NG  IPED  K +F RF         +  G G+GLSIV+  + 
Sbjct: 522 RVAIHDVGSNIQISVEDNGMGIPEDKKKMIFERFFQLDKTFTRKNEGSGIGLSIVKLLVE 581

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
           LH G + + S     +    ++P ++
Sbjct: 582 LHDGTIEVKSKVGIGSEFTVKLPVRK 607



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 10/151 (6%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           + DS+ FLV  +++ G  +  N   K+  E  G+  +         +       +   S 
Sbjct: 130 IIDSIPFLVIIKNENGKHIKVN---KEAREFYGVKEEIKKDNKLDKYNYSELNNLKIESE 186

Query: 258 LEKNFCETVSTLEHGNNKSY----KIVRVLNSFGEAGIAIDVSK--EITVNDQLTHTYEI 311
             K FCE V   ++     Y     +    N      I  D++K     + +   +   +
Sbjct: 187 SSKTFCEQVLNKDNEERTLYVIAIPVTINNNEKFTVIIKSDITKFQNNQIENNGENLKNL 246

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
             ++  AI I D N  + + N+   EL+  +
Sbjct: 247 FKSVPEAIFIHD-NTKVIYLNKVAKELFGCE 276


>gi|224539516|ref|ZP_03680055.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518864|gb|EEF87969.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 997

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 100/520 (19%), Positives = 220/520 (42%), Gaps = 45/520 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           K+      +T  + +  N+ +       I+D    +             D   +  NP  
Sbjct: 355 KQEEQIRLMTSYHSLFENMPIVYLKQQLIYDSAGKIV------------DYITVEANPRF 402

Query: 353 DELLEFLRS-ANKLPEQLNWKTWKE--NIFSVYKSSETH-KDTWHLPN-GQTLHVIVTSN 407
           ++  + +     K   + + K ++   +++S+  S++      ++  N G   +VI+T +
Sbjct: 403 EKYFKSMGEVIGKKGSEADPKGFERMCHLYSMVTSTQKELSYQYYYENIGNYFNVILTPS 462

Query: 408 PRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETID---------HLSEGVAVFGPDGRIK 457
              G I +F  + T   + +    +       ++D          L +G  +   +  ++
Sbjct: 463 KHKGFIDVFCVDNTELAETQQMLRSANHKLSMSLDVANIVPWKWDLEKGTMLCDVNRPVE 522

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           LS+    S+   ++  +    +   I         ++   +L    ++   +E + +   
Sbjct: 523 LSHD--DSMMNEDQLSVPDYQYFAKICKEDRERVKKA-YKELTEGNVSKIKEEYRVIVRK 579

Query: 518 LELLSDSVLEYSIIPLPNAQ------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
             +     +E         +       + + + +T   + E  L    E   +++ +K++
Sbjct: 580 NGVARYEWVEAQATVDKRDEKGNPITLIGSSLVITGRKKMEEDLITAKEKAEESNRLKSA 639

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PL  I+GF+ +L  ++         +Y+  I  ++T+LL LV DILDL+
Sbjct: 640 FLANMSHEIRTPLNAIVGFSSILADAEEPEEK---EEYINIIENNNTLLLQLVGDILDLS 696

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +++G ++  YS I LN L  E+++S   +   + + I+ + +        ++ RL Q+ 
Sbjct: 697 KIESGTLEFVYSDIDLNALFQELEESARLRQKNDAVVIRYLPEMPDCFVNIEKNRLTQVV 756

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + +++NAM F+  GS       ++     F + + G  I +D   +VF RFV      Q 
Sbjct: 757 TNMMNNAMKFTPSGSITFGYHLKNTDFLYFYITDTGYGIEKDKKDTVFGRFVKLDSFSQ- 815

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGLSI +S +   GG + + S     +T    +P +
Sbjct: 816 -GTGLGLSICQSIVENLGGEIGVESEPGKGSTFWFTLPYR 854


>gi|90022757|ref|YP_528584.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
 gi|89952357|gb|ABD82372.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
          Length = 481

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/489 (19%), Positives = 186/489 (38%), Gaps = 38/489 (7%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L +    I   D +R + F +     +       L     +D L         +P     
Sbjct: 14  LASWPDGIIALDADRCILFASELAQSILGWQKTELEGKHIHDILC--------IPNIATT 65

Query: 372 KTWKENIFSVYKS--SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
              +        +  SET    W    G+ + V     P          ++   +    +
Sbjct: 66  HNIQACPLCQTDNIDSETQSSNWLTGTGEYISVDYRVIPIESPHQTTRLISFSANHHRIH 125

Query: 430 NTLV-KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           N    K   + +D+    +  F  DG++   NPA +      E  L  G          +
Sbjct: 126 NQAEMKKLADYVDNNPAPLVEFDRDGQMLFGNPALQ------EALLDWGFD--------A 171

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
               +    +LF ++     D   S+ G    L ++ L +   P+ +           D 
Sbjct: 172 EGQAKIFPNNLF-SLCEQCLDSGASITGEEVTLDNTYLSWHFHPIFSEGVTTVLGYAFDI 230

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            + + A  E  E      + +  F   + +ELR+PL  IIGF+D+L       L+ + + 
Sbjct: 231 SKQKNAELEAKE---ARAQARRDFYAKMMHELRTPLNAIIGFSDVLLWRSAAKLDERDNT 287

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  +   L  ++ D LD++ ++AG M +   T V + LL E+++ +        + 
Sbjct: 288 ALRNIKVAGIQLNEMITDTLDISKIEAGKMVVEPETFVASLLLQEMQEQMRYLAEAKGLT 347

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL-----KAARDNGDFIFS 722
              +S+  +  F +D++++ Q+ + ++SNA+ ++  G   V +            + + +
Sbjct: 348 YHSVSNADIP-FHSDKKKIRQVLANLISNAIKYTKSGDVRVSVIQTTNSIQTTESELVIT 406

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IPED   S+F  +        +  +G G+GL++V   I+L  G + + S    
Sbjct: 407 VTDTGIGIPEDQINSLFEAYQRVKESKNKDIQGTGIGLALVWELIHLLNGEIKVESIYGQ 466

Query: 781 VTTINCRIP 789
            +T   + P
Sbjct: 467 GSTFTAKFP 475


>gi|114567640|ref|YP_754794.1| bacteriophytochrome-like protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338575|gb|ABI69423.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 727

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 117/692 (16%), Positives = 251/692 (36%), Gaps = 53/692 (7%)

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYS------ 176
              ++++     R+ G+    V ++     +  +G         +  S++G  +      
Sbjct: 59  DLREMTRQMGLARQRGE---EVPDSYELRLLGKQGNCFWVHIKAKNTSVEGERTVIVSAF 115

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQK 235
           +++E       L        +L ++        D  G  L+ N  + + T      V   
Sbjct: 116 DISERKAIEADLLRQKESLLLLLENNPVATVLVDPEGKTLYVNPRFIEYTGYGLEEVSTS 175

Query: 236 AIGESRKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
            + E   L +   ++ ++ S       +  +  + V     G  + + I  V    G   
Sbjct: 176 QVWEENVLAEMPNRREIMRSWYQNLKEIGYSKGKVVLRRRDGERRFFNIHSVALPDGHIV 235

Query: 291 IAI-DVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           +A  D++ ++     L  + +    L+      I I  +N      N++  EL+      
Sbjct: 236 LAAWDINDQVEAQKILQESQDRFKALSEASFEGIIIT-ENGICIEANQAAEELFGY---- 290

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                S +EL+     +   PE    +  K  + S  ++   ++      +G  + V + 
Sbjct: 291 -----SREELIGLDVMSFTAPEAR--EIVKSQMMSASQA--PYEAIVLRQDGTRVPVEIQ 341

Query: 406 SNP-----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                   R        +L+ +   E +             +  + V +     RI  +N
Sbjct: 342 GRSFIYQGREVRAAAIRDLSERRRAEEEIYRQSTNLQALFYNTPDAVVLCDSLHRILDAN 401

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           P F   +               +     R  +      +      S +  RK   G L  
Sbjct: 402 PRFFEFFGYSIEECRGFILEEVLVPEEMREESAFMSRMVSDGQAISRESMRKKKNGEL-- 459

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                +  ++IP+ ++   + + ++++   AE  + ++ + L   +     F   VS++L
Sbjct: 460 ---LPVLVTMIPIASSGYYVLYTDISERKEAEATIQQQIKELEAKNAEMERFTYTVSHDL 516

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           RSPL  I GF+ LL         ++  + ++ I  +S  +  L+ D+L+L+ +  G +  
Sbjct: 517 RSPLITIKGFSGLLLQDLEKGKTARLQKDIQRIINASGKMEELLEDLLELSRI--GRILN 574

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            YS   +N L  EV + ++  + +      V+    +     DR+R+ ++   +L NA+ 
Sbjct: 575 PYSNFPMNQLCFEVVELLSGPISQKKAE--VVVAPYMPWVQGDRRRIAEVVQNLLENAIK 632

Query: 701 FSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           F        + +      G+ +F +K+NG  I     + VF  F          G G+GL
Sbjct: 633 FMGDNERPRIEIGYFPGEGECVFFIKDNGIGIEAKYREKVFGLFDKLDQST--EGTGIGL 690

Query: 759 SIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
           ++V+  I LH G + + S+     +T    +P
Sbjct: 691 ALVKRIIELHQGRIWVESAGAGQGSTFYFTLP 722


>gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341]
 gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341]
          Length = 925

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 108/511 (21%), Positives = 207/511 (40%), Gaps = 70/511 (13%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF---HNRSFVELW---EIDLAF 345
           A+ +    +V   +++ +     L  +IA+FD N  L      + +F +L    +  + F
Sbjct: 60  ALRMQSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPF 119

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L+++  ++  L                            +    +   L NG        
Sbjct: 120 LSSSVIDENTL-------------------------ILRTPIVSERTILENGDANP---- 150

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P  G I +  +L+       +     ++    +      V V    G +     AFR 
Sbjct: 151 ATPVMGYIAIELDLS-----SLRLQQYQEIFSAGL------VLVI---GILLSGVFAFRL 196

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +           TH++N+     R + +     +   +    D  +K +      LS+  
Sbjct: 197 MHDVTRPI----THMKNMVDRIRRGHLD---VRIEGKMHGELDSLKKGINAMAVSLSEYH 249

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +E           +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL 
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLN 307

Query: 586 NIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +IGFT  +LKT     L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L    
Sbjct: 308 GVIGFTRQMLKTQ----LTNSQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIP 363

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
               ++L EV    AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ 
Sbjct: 364 FEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTE 423

Query: 704 KGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
           +G+    V +++ RD+  D  F V++ G  I E     +F  F         +  G GLG
Sbjct: 424 RGNIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLG 483

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L I +  ++  GG +S++S     +T    +
Sbjct: 484 LVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514


>gi|265765195|ref|ZP_06093470.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254579|gb|EEZ26013.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 411

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 180/400 (45%), Gaps = 34/400 (8%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           +++  ++VQ +   ++    K     +  ++    +   D  +  +N  +  L    E  
Sbjct: 23  YLWRKISVQKN---EWVAQTKESDTILRSMNACFILINSDLVVIRTN--YYDLSGISEEP 77

Query: 474 LSPGTHIRNIAATCSRY-------YNESDGWDLFAAIITSFDDER--KSLQGTLELLSDS 524
            S G     +    +         +   +   +   I  +F  ++    L+ ++ LLS  
Sbjct: 78  ASSGRVGDLLNCKNAVRSGGGCGAHKNCENCMIRHTIENAFCHKKGFHKLEASMRLLSSD 137

Query: 525 VLEYSIIPLP------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                IIP              + Q +LT  ++T+    +R L  + E    A+++K++F
Sbjct: 138 --HQQIIPCDVSVSGTYLNNEGHEQMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAF 195

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+GF+ LL +      ++++  Y++ ++ ++  LL +V D+LDL+ 
Sbjct: 196 IANMSHEIRTPLNAIVGFSGLLAS---ADDDTEKKMYLDIVAENNDRLLQIVTDVLDLSK 252

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIF 691
           +++G +  +YS   +NDLL  +   +  ++ +   I++   +        +++ R++QI 
Sbjct: 253 IESGSLDFHYSEFDVNDLLCALHGILNIRLKDKPEIKLICKAGTDEWIIYSEQHRIVQII 312

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           + ++ NAM F+  G        +   +  F V + G  IP      +F+RF    H  + 
Sbjct: 313 TNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EV 370

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL++ ++ +   GG + + S     +T    +P K
Sbjct: 371 PGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLPLK 410


>gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
 gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
          Length = 927

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|254679644|gb|ACT78509.1| GacS [Pseudomonas sp. DF41]
          Length = 916

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 141/316 (44%), Gaps = 15/316 (4%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           I+   A     + E+    L +  +         + GTL+   +  L++SI    +  T 
Sbjct: 201 IKQAVAQLKDGHLETRLPPLGSQELDELASGINRMAGTLQNAQEE-LQHSI----DQATE 255

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               N+         L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+ 
Sbjct: 256 DVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE- 314

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q  Y+  I  S+  LL ++N+ILD + ++AG + L+     L DLL +    +A
Sbjct: 315 --LTPRQLDYLGTIEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILA 372

Query: 660 TKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              H   + +  ++      S V D  RL QI + ++SNA+ F+ +G+ V      D  +
Sbjct: 373 PAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHE 432

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
                  S+++ G  +     +++F  F    +    Q  G GLGL I +  +   GG +
Sbjct: 433 DSVQLRISIQDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEI 492

Query: 773 SISSSDEGVTTINCRI 788
            + S+    +     +
Sbjct: 493 GVDSTPGEGSEFWISL 508


>gi|227821337|ref|YP_002825307.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227340336|gb|ACP24554.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 527

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/330 (27%), Positives = 156/330 (47%), Gaps = 18/330 (5%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-----SLQGTLELLSDSVLEY---- 528
            H++++     R + E        + + + D  R+     ++   LE  S S  ++    
Sbjct: 140 DHLQSMRDPRGRGFVEQIYVSDRISFLKAIDALRQGAACSAVDIRLERPSASSAQFVHMR 199

Query: 529 -SIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             + PL +A+      +    +V+   R       K      A++ K  F+  VS+ELR+
Sbjct: 200 CEMTPLRDAEGRLMAIVAQSRDVSAEARLRAEAAAKAAHAESANDAKTRFLAAVSHELRT 259

Query: 583 PLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           PL  I+GF+D+L     G L N +Q +YV  I  S T LL++VN +LD++ ++AG  +L 
Sbjct: 260 PLNAILGFSDVLTGEYFGKLENDRQREYVSLIHRSGTHLLSVVNTMLDVSKIEAGRYELV 319

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                + D +   +  ++ +  E  +R+       +G   AD++ + QI   ++ NA+ F
Sbjct: 320 PEPFRVADAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAVQQILINLVGNAVKF 379

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLS 759
           + KG  V + A  D      +V + G  I ED  + +   FV   N +  +  G GLGLS
Sbjct: 380 TDKGGLVTVDAEVDGAMLNLTVSDTGIGIAEDKLEKLGQPFVQIQNDYTRRYEGTGLGLS 439

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +V+  + LHGG +SI SS+   T +   IP
Sbjct: 440 LVKGLVELHGGGISIRSSEGEGTVVVVSIP 469


>gi|269926600|ref|YP_003323223.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790260|gb|ACZ42401.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 579

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 5/277 (1%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G   L  +     S   L  A T+     V+          +  EA ++AD++++  +  
Sbjct: 301 GVFVLGREEPHRVSQHELRFASTLAVQAAVSIHTAFLFEEAKTIEAAKEADKLRSQLLGT 360

Query: 576 VSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           VS+ELR+P+  I GF   LK   ++      Q  ++  I  ++  L  LV D+LDL+ ++
Sbjct: 361 VSHELRTPIAAIQGFASSLKCADEVEIPKEMQQDWINEIEQNAERLRRLVTDLLDLSRLE 420

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +G +++      +ND+L+E+   +       N+ ++V     L     D +R+ Q+   +
Sbjct: 421 SGALRMQMEWQDMNDVLDELAPDLQMIAEGRNLVVQV--SDTLPLIKCDAERIGQVLRNL 478

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRR 752
           + NA  FS  GS +++ A R        V + G  IP +    +F RF     A    ++
Sbjct: 479 VENARKFSPPGSNIVVGAERYENGIRVGVLDEGEGIPPEYHDKIFERFFQIEGASFRPQK 538

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+I  + +  HGG + + SS    +     +P
Sbjct: 539 GTGLGLAICRNIVEAHGGRIWVESSPGKGSIFYFTLP 575


>gi|330971298|gb|EGH71364.1| response regulator receiver [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 1172

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 161/364 (44%), Gaps = 14/364 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
             TL +   E ++ +++ +           S  A R   + +E           +     
Sbjct: 365 LRTLTERDVEFLELVADNIGT---------SIEAARYRQRLQEVLAETQQLNEELQVQQE 415

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + I+       ++ Q  LE  ++ + + S       Q      N  + 
Sbjct: 416 ELRTANEELEEQSRILKESQAHLETQQAELEQTNEQLADQSQALAE--QRDALDRNNEEL 473

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q +
Sbjct: 474 NIAQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK 533

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  + 
Sbjct: 534 FAESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLA 593

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             V    G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++G
Sbjct: 594 FTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSG 653

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  + +F  F        RR  G GLGLSI      L GG +S++S+    +  +
Sbjct: 654 IGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFS 713

Query: 786 CRIP 789
             +P
Sbjct: 714 LVLP 717


>gi|320324583|gb|EFW80660.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 1170

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + + S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLADQSQALAD--QRDALDRNNEELSIAQAELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPGENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEM 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +F V+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +  +  +P
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717


>gi|303242336|ref|ZP_07328821.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
 gi|302590099|gb|EFL59862.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
          Length = 917

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 102/525 (19%), Positives = 217/525 (41%), Gaps = 37/525 (7%)

Query: 294 DVSKEITVNDQLTHTYE--------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           D+S+           +E        +  N    I +      + + N+   ++   +   
Sbjct: 142 DISESTDGKMLFDEIFESINISAHDVFENTVDGIVVTGPEGEILYLNKFAEQIIGWEQKD 201

Query: 346 LATNPSNDELLEFLRSA--NKLPEQLNWKTWKENIFSVYKSS---ETHKDTWHLPNGQTL 400
           +    + +E+         NK P  +        +  + K++     +K+  +L  G + 
Sbjct: 202 VIGK-AFEEIFHLFEGDPCNKAPNPVKKAIETRKVVGLAKNTLLLTKNKEYIYLSAGIST 260

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPD---GR 455
            +          + +F +++     E       +      ++  + + V    PD   G+
Sbjct: 261 -IQDRDEKVKAVVIVFRDISRLRRREINVEENERKYRALFNNTLDAIFVSLVMPDNELGK 319

Query: 456 IKLSNPAFRSLWKTEENRLSPGT--HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           I   N A           L       +  +    S  Y+ +   +   A+I +     K 
Sbjct: 320 IIEVNDAACRWTGFSREELLNMEITDLMKVLKVESSSYSNTGMVNY--AMINAEAGVIKK 377

Query: 514 LQGTLELLSDSVLEYSI--IPLPNAQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKN 570
            QG L+  +    E SI    L N +  L+  +   S R A+  + +  +   +A++ K+
Sbjct: 378 NQGILD-NNKVYFESSIHYFTLNNQKIALSINHDVTSFRVAQEQMLQAKKIAEEANKTKS 436

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+PL  IIG +DL+   K+     +Q +  + I + S  LL+L+N+ILD 
Sbjct: 437 IFLANMSHEIRTPLNGIIGMSDLMLRVKMTP--EEQRETTKTIISCSQNLLHLLNNILDF 494

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQ 689
           + ++A  ++++ +   L +++ E       +  E ++ I     DG    ++ D+ ++ Q
Sbjct: 495 SKIEAEKVEISSNVFDLKEIIGESINMYKIRAKEKSLDISAGFQDGLENLWIGDKVKIQQ 554

Query: 690 IFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRF--V 743
           I + +++NA+ F+ +G   V++    D+G   +  F+V + G  I +     +F  F  V
Sbjct: 555 ILNNLINNAIKFTIEGRINVLVNKLNDDGSCCELQFTVSDTGIGIEDKDLNKLFVAFSQV 614

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             ++  Q  G GLGLSI +  + L GG + + S+    +  N  +
Sbjct: 615 DGSYTRQFGGTGLGLSISKKLVELMGGRIWVESTMGVGSRFNFTL 659


>gi|85859338|ref|YP_461540.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB]
 gi|85722429|gb|ABC77372.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB]
          Length = 583

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 150/376 (39%), Gaps = 32/376 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T   +     +         +  + EGV +     RI+  N A  ++ +  E  +   T
Sbjct: 226 VTEYREKIRLAHEEKGKLESALASMVEGVVILDSRNRIESCNQAIEAILERPETEIREKT 285

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPN- 535
            +                       +  F  ERK +   + L      V++ SI  + + 
Sbjct: 286 LLEAFLNAD------------LQNALDRFRMERKPVLQEIRLGRKDPRVVDVSISAIKDL 333

Query: 536 -AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                 T +   D  R           L+K ++I+  FV +V++E+++PLT IIGF   L
Sbjct: 334 PDGVEKTMLVFHDVTR-----------LKKLEQIRTDFVANVTHEIKTPLTAIIGFLQTL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L        ++++ I+ ++  L  LV+D+L L++++     L+   + ++ L+  +
Sbjct: 383 LDGALDD-RETARKFLQTIATNAERLSRLVDDLLTLSSIELNETSLHLEPLSVDVLIRSI 441

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +       NI + V       + +ADR R  QI   +L NA+ F+  G  V +  + 
Sbjct: 442 LPMVNADAKAKNILLNVDLPEAFLNILADRDRAAQILMNVLHNAVKFTPAGGIVTVSGSE 501

Query: 715 DN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
           +      I  V + G  IP      +  RF        R   G GLGLSIV+  +  HGG
Sbjct: 502 EEKGNFVIIQVVDTGIGIPPREIPRLGERFYRVDKARSRELGGTGLGLSIVKHLMAAHGG 561

Query: 771 HVSISSSDEGVTTINC 786
            + I S+    T ++ 
Sbjct: 562 KMRIESTPGKGTIVSL 577



 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 57/176 (32%), Gaps = 23/176 (13%)

Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGIAID--VSKEIT----VNDQLTHTYEILHNLT 316
            +    +  G      +V   +  G+    I+  V++        +++       L ++ 
Sbjct: 192 RDYTRAIRRGELPGTLLVDSADELGQVAEDINYLVTEYREKIRLAHEEKGKLESALASMV 251

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             + I D    ++  N++   + E     +      +  L             + +   +
Sbjct: 252 EGVVILDSRNRIESCNQAIEAILERPETEIREKTLLEAFL-----------NADLQNALD 300

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRG--GTIWMFENLTVQVDLET 427
             F + +     +      + + + V +++    P G   T+ +F ++T    LE 
Sbjct: 301 R-FRMERKPVLQEIRLGRKDPRVVDVSISAIKDLPDGVEKTMLVFHDVTRLKKLEQ 355


>gi|206577626|ref|YP_002236379.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae 342]
 gi|206566684|gb|ACI08460.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae 342]
          Length = 779

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 23/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K     ++Q           +D   + V     D      N A   L    E 
Sbjct: 134 EQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 193

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 194 QLIHLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 248

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 249 YYDRVGKRRGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++   L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 307 ILLDTE---LTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLA 363

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++
Sbjct: 364 DLENLSGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVR 423

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD + F V+++G  IPE     +F  +         +   G G+GL++       
Sbjct: 424 VRYDEGDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARN 483

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG +S++S      T    
Sbjct: 484 MGGDISVTSQPGKGATFTLT 503



 Score = 44.9 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 17/152 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +L+ +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T  
Sbjct: 131 TTLEQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGK 190

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV- 280
                Q    + + ++ EE  ++++ +   EK F   VS           G    ++I  
Sbjct: 191 S--EKQLIHLKPQDVYSEEAAEKVLETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRK 246

Query: 281 -----RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                RV    G  G   D+++     D L  
Sbjct: 247 VPYYDRVGKRRGLMGFGRDITERKRYQDALER 278


>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
 gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
          Length = 762

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 123/252 (48%), Gaps = 9/252 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E AL E  +A   A+  K+ F+ ++S+E+R+P+  +IG  +L+  ++   L+  Q
Sbjct: 218 ERNEREHALQEACKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILDTE---LDEDQ 274

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y E IS S + LL ++NDIL+ + ++AG ++L+ +   L   + +V   ++ +     
Sbjct: 275 QMYAETISKSGSALLTIINDILNFSKIEAGKVELDNAPFNLQVAIEDVVTLLSPRATMKG 334

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--FS 722
           + I +     L  F   D  R+ Q+ + I+ NA+ F+S G   + +  A+    +     
Sbjct: 335 VEITLRYAPDLPEFFTGDVGRVRQVVTNIVGNAIKFTSTGYVAIDVSGAKGPKGYQLGIE 394

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IPE+    +F+ F            G GLGL+I    ++L GG V++ S    
Sbjct: 395 VLDTGIGIPEERLDDIFSAFEQVDSAATRSFEGTGLGLAISSRLLSLMGGRVTVKSVAGK 454

Query: 781 VTTINCRIPSKE 792
            +    R+P  E
Sbjct: 455 GSVFTIRLPLTE 466


>gi|330821703|ref|YP_004350565.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327373698|gb|AEA65053.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1172

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 153/332 (46%), Gaps = 12/332 (3%)

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A +   + +E           +          ++G +     +       +S Q  LE  
Sbjct: 387 AAQYRERLQETLAEAQQLNEEMQVQQEELRVANEGLEERGRALIDSQARLQSHQAELEQT 446

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +  + EY+                 + V A+++L+     L +    K+ F+ ++S+ELR
Sbjct: 447 NTQLEEYA---------QRLERQKAELVSAQQSLSANAARLEQTSRYKSEFLANMSHELR 497

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL + +    LL+ ++ G+L  +Q  Y + I +S++ LLNL+NDILDL+ V+AG + + 
Sbjct: 498 TPLNSSLILARLLQENRGGNLTDEQVHYAQTIHSSNSDLLNLINDILDLSKVEAGHIVME 557

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMD 700
             T+VL+ ++  +++  +       + + +  + G  G+ V D QRL+QI   +LSNA+ 
Sbjct: 558 PETVVLDTVMRSMREMFSPIAEGKALTLTITRAPGTPGTIVTDHQRLVQILRNLLSNALK 617

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           F+ +G   +  +    G+  F V+++G  I  D  + +F  F        R   G GLGL
Sbjct: 618 FTERGEVALGISVDGAGEIRFEVRDSGIGIAADKLEMIFEAFQQADGSTSRHYGGSGLGL 677

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           SI   F  L GG + + S     +    R+P 
Sbjct: 678 SISRKFAELLGGRIDVVSEPGAGSVFTLRLPL 709


>gi|146340985|ref|YP_001206033.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146193791|emb|CAL77808.1| putative sensor histidine kinase with PAS/PAC and response
           regulator receiver domains [Bradyrhizobium sp. ORS278]
          Length = 771

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 158/396 (39%), Gaps = 38/396 (9%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G +++ +NL  Q+  E +  T+  +  E  ++ +  +     +GR+  +   F  + +  
Sbjct: 221 GNVFL-DNLKAQIRHERQNETISLLLKEFQENAASWLWQTDAEGRLIDAPQRFADVAQLP 279

Query: 471 ENRLSPGTHIRNIAATC-----------SRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            ++L     I  +   C            R        ++   ++ +   ER+    T  
Sbjct: 280 LDQLKGERLIDTLKYLCPTDTATLKTLADRMAQRLSIPEILIHVVVAG-GERRRWALTAR 338

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              D   ++       A       +VT+  RAE+A              K+ F+  +S+E
Sbjct: 339 PARDHEGKF-------AGYRGFGRDVTERWRAEQA--------EAESRAKSDFLAMMSHE 383

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++G    L  +K   L+ +Q   V  I  S   L  ++NDILDL+ ++AG ++
Sbjct: 384 IRTPMNGVLGLASTLLETK---LDDEQRHAVMTIRESGDNLQRILNDILDLSKLNAGKLE 440

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
                   + L+  V   I       ++ +    D KL      D  R+ Q+   + SNA
Sbjct: 441 FETVDFSPSALVEAVTAIIGVNAKSKSLLVNADIDPKLPPSLKGDVARIRQVLINLASNA 500

Query: 699 MDFSSKGS-TVILKAA-RDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + F+ +G  T+ +    RD+        V + G  IP D    +F  F        RR  
Sbjct: 501 VKFTERGGVTIAVSCRTRDDHKATIEWRVSDTGIGIPADRVGKLFTDFAQADASINRRFG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+I    I   GG +++SS     +T    +
Sbjct: 561 GTGLGLAISRRIIEQMGGAIAVSSVQGEGSTFRFSL 596


>gi|89093729|ref|ZP_01166676.1| sensor histidine kinase with a response regulator receiver domain
           [Oceanospirillum sp. MED92]
 gi|89082125|gb|EAR61350.1| sensor histidine kinase with a response regulator receiver domain
           [Oceanospirillum sp. MED92]
          Length = 1144

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 129/257 (50%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q+      +    + +R L E  E   +A+E K+ ++  +S+ELR+PL +I+G+  LL
Sbjct: 653 NHQSAKLTREIDAHEQTDRELQEAKEQAERANEAKSRYLTGISHELRTPLQSILGYAQLL 712

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S+   + S Q + ++ I  S   L +L+  +LD++ ++AG + L  + + L +L++++
Sbjct: 713 --SEKEEVASDQKRGLKIIHRSGQYLTDLIEGLLDISKIEAGRLDLFRNQVNLPELIDQM 770

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +    +  + ++ +    DG+L    + D +RL QI   +LSNA+ ++ KG  V     
Sbjct: 771 VEMFRVQADKKSLVLNFTLDGRLPDYVMTDEKRLRQILINLLSNAIKYTDKG-KVDFHIR 829

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             N    F V++ G  I ++    VF  F  V N+    R G GLGL+IV+    + GG 
Sbjct: 830 YRNQVAEFVVRDTGPGIEKENLDRVFQPFERVRNSSNAHRPGTGLGLTIVKLLTEIMGGD 889

Query: 772 VSISSSDEGVTTINCRI 788
           + + S     +     +
Sbjct: 890 LQVKSEIGTGSEFRVSL 906


>gi|289646781|ref|ZP_06478124.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 1172

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + + S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLADQSQALAD--QRDALDRNNEELSIAQAELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPGENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEM 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +F V+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +  +  +P
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717


>gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 921

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 140/319 (43%), Gaps = 15/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++ +   R         +   ++   D  +  +      LS+  +E          
Sbjct: 201 RPISHMVSVVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLSEYHVEMQQSIDQATS 260

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  ++GFT  +LKT
Sbjct: 261 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVLGFTRQMLKT 318

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                LN  Q  Y+  I  S+  LL ++NDILD + ++AG + L        + L+EV +
Sbjct: 319 R----LNPSQQDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFAESLDEVMR 374

Query: 657 SIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +A   HE  + + +  D +   S + D  R+ Q+ + ++ NA+ F+ +G+  V ++   
Sbjct: 375 LLAPTAHEKGLELTLKVDDRIPPSLIGDALRIQQVLTNLIGNAVKFTERGNIDVTVELKS 434

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
           D  D      F V++ G  I E     +F  F         +  G GLGL I +  ++  
Sbjct: 435 DKDDEGIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQM 494

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG VS++S     +T    
Sbjct: 495 GGEVSLTSRLHQGSTFWFT 513


>gi|168704693|ref|ZP_02736970.1| CheY-like receiver protein [Gemmata obscuriglobus UQM 2246]
          Length = 718

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 158/381 (41%), Gaps = 29/381 (7%)

Query: 433 VKVQGETID-HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            + Q    D  L + VA          SN   ++     E   +    + +      R  
Sbjct: 75  QERQAARFDEALPQAVAQVARIRTFTESNSPLQTSLDQFEPVFNQFCRVASGIVEARRGG 134

Query: 492 NESDGWDLFAAIITSFDD------------ERKSLQ---GTLELLSDSVLEYSIIPLPNA 536
              +   L +  +T   D            ER +L+   G  E  +   L  ++     A
Sbjct: 135 ATPNELALRSEALTDASDALIGASQAMQAEERHTLRARAGEAEKAA-RWLGSAVAACATA 193

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T L   +     RA R      +A   A   K  F+ +VS+ELR+PL  IIG TDL   
Sbjct: 194 GTGLACASGFWVFRAMRRARRARDAAEDASRAKGEFLANVSHELRTPLNGIIGMTDL--- 250

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G L   Q   +  +  S+  LL LVND+LDLA ++AG + L      L+ ++    +
Sbjct: 251 TLGGELPPDQRDRLLLVRESAGTLLTLVNDLLDLAKIEAGRLDLAPVRFELHRVVGRALR 310

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAAR 714
            +A +     + ++     ++ +  V D  RL+QI + ++SNA+ F+  G  VI ++AA 
Sbjct: 311 LLAERARNKGLVLRCAIAPEVPTEAVGDPDRLVQILTNLVSNAIKFTENGEVVIHVRAAE 370

Query: 715 DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
            +       F V + G  IP D  + +F  F        R   G GLGLSIV+    + G
Sbjct: 371 RSAGGLAVAFEVADTGIGIPADRLEKIFRPFEQADGSTTRKYGGTGLGLSIVDRLTRMMG 430

Query: 770 GHVSISSSDEGVTTI--NCRI 788
           G V+++S     +T     R+
Sbjct: 431 GRVTVASQPGRGSTFTATVRL 451


>gi|302187737|ref|ZP_07264410.1| response regulator receiver [Pseudomonas syringae pv. syringae 642]
          Length = 1172

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/364 (22%), Positives = 159/364 (43%), Gaps = 14/364 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ +++ +           S  A R   + +E           +     
Sbjct: 365 LRALTERDTEFLELVADNIGT---------SIEAARYRQRLQEVLAETQQLNEELQVQQE 415

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + I+       ++ Q  LE  ++ + + S       Q      N  + 
Sbjct: 416 ELRTANEELEEQSRILKESQAHLETQQAELEQTNEQLADQSQA--LADQRDALDRNNEEL 473

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q +
Sbjct: 474 NIAQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK 533

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD++ V+AG +++      +  L+  ++        E  + 
Sbjct: 534 FAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLA 593

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             V    G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++G
Sbjct: 594 FTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSG 653

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  + +F  F        RR  G GLGLSI      L GG +S++S+    +  +
Sbjct: 654 IGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFS 713

Query: 786 CRIP 789
             +P
Sbjct: 714 LVLP 717


>gi|172037421|ref|YP_001803922.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698875|gb|ACB51856.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 418

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 177/403 (43%), Gaps = 16/403 (3%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVFG 451
           QTL+V++  N +G  + +  +L   V       +E++   L  ++  + + +  G  +  
Sbjct: 18  QTLNVLIIDNDKGNRLAIERSLKQIVPLLNLSKVESRTKALALLKEVSFNCIFLGSLLSD 77

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            DG   L            +  L   T   N     ++ + ES  WD     + S D   
Sbjct: 78  GDGLSLLK----EIQNMGVQAPLIVLTPPEN--KKITQEFMESGAWDYIIESMISPDILF 131

Query: 512 KSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           K+L+ ++ +   +  L+ +   L     +L   N  +  + +  +  KN  L++A   ++
Sbjct: 132 KTLKNSMRIHEVEKELKVTNQQLRENNKILKQKNK-ELKQQQDQIHLKNLQLQEASRRQS 190

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+P+  I+GF+ LL       L  +Q   ++ I  +S  LL L+N++LD 
Sbjct: 191 QFLATISHELRTPMNAIMGFSQLLLRQYPDPLTDQQIDIIQRIFNNSQNLLTLINEVLDF 250

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + ++ G M LN     L+ L+    + +++     N+ + V         + D+  L +I
Sbjct: 251 SKLEIGQMDLNIGKFDLDILVRFTVEELSSLTLNKNLSLNVDIHLANNQVINDKNFLKRI 310

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +LSNA+ F+  G   +     +      ++++ G  I  +  K++F  F        
Sbjct: 311 LINLLSNAIKFTPAGEIWVKVWEMNPERIAITIEDTGVGIAPEHLKTIFTPFHQVDQTLT 370

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           R+  G GLGL+IV S + +  G + ++S  E  +     IP +
Sbjct: 371 RQHLGTGLGLAIVYSLVKMMQGEIHVTSQLEQGSVFRVEIPRR 413


>gi|307822393|ref|ZP_07652625.1| histidine kinase [Methylobacter tundripaludum SV96]
 gi|307736959|gb|EFO07804.1| histidine kinase [Methylobacter tundripaludum SV96]
          Length = 673

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 122/251 (48%), Gaps = 8/251 (3%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L         A+  K+ F+ ++S+ELR+P+  ++GF+ L++  K   L+ +Q 
Sbjct: 193 RKQTEQKLLAAKNEAEAANRAKSIFLANMSHELRTPMNAVLGFSQLMQ--KDSDLSPEQR 250

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  I+ S   LL L+ND+LD+A ++AG + +      L  L+ +    +  +     +
Sbjct: 251 ETLNIINNSGKHLLELINDVLDMAKIEAGRVIVENGNFDLGALIRDTIDMMHQRAEAKGL 310

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIF 721
            + +        FV +D  +  QI   ++ NA+ ++ KG  ++L  A +  D      I 
Sbjct: 311 ELFLDQSSSFPRFVNSDEAKFRQILLNLVGNAIKYTQKGRVIVLLTAENLPDTQQCLLIC 370

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +K+ G  I +     +F+ FV       ++G GLGL I + +  L GG V+++S     
Sbjct: 371 EIKDTGIGIAKQDLPFIFDTFVQVGRESDQQGSGLGLRITKQYAELMGGQVTVTSELNKG 430

Query: 782 TTINCRIPSKE 792
           ++    +P+ +
Sbjct: 431 SSFILTLPAAK 441


>gi|300697811|ref|YP_003748472.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
 gi|299074535|emb|CBJ54086.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
          Length = 675

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 151/376 (40%), Gaps = 20/376 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---SNPAF----RSLWKTEENRLSPGTH 479
           T+     +     +      ++++  D  +      NP F      L       +     
Sbjct: 152 TQQRVSQQRLLAALQASP--ISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRA 209

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +     R         +  A       +R      +  L D   E  II L NA   
Sbjct: 210 ASRLTEAGQRVIATGSPTRVEFAFRRRHT-QRVVYDVVVMPLRDDTGE--IIGLTNAVID 266

Query: 540 LTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +T     ++ R +   A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL   
Sbjct: 267 ITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR 326

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 +   + +  I  S+   ++L++D+LD++ + +G + L    + L D+L   +++
Sbjct: 327 PYD--EAMFRRGLAAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARET 384

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I     E  I I       +     D  RL Q+F  +L+NA+ F+ +G  + +       
Sbjct: 385 IEPMAREKQITIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHASPE 443

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH G ++ +
Sbjct: 444 GLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAT 503

Query: 776 SSD-EGVTTINCRIPS 790
           S+     TT+   +P 
Sbjct: 504 SNGTNLGTTMTVTLPL 519


>gi|289628366|ref|ZP_06461320.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 841

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|269102304|ref|ZP_06155001.1| sensory box sensor histidine kinase/response regulator VieS
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162202|gb|EEZ40698.1| sensory box sensor histidine kinase/response regulator VieS
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1249

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 160/379 (42%), Gaps = 18/379 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E K    + +  E I+ +   + +   + +    N  ++  +    N  +   
Sbjct: 542 VKRREKAEKKAVQQLDLLNEIIESIPSMLLMQDTNNQRVFWNNNYKETFSQFWNHNNMQP 601

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNA 536
                    S   N +          TS ++ R+++   GT     D +    +I   + 
Sbjct: 602 SWEEYNK--STLENATVLKTGIDINNTSKNNLRQTILPDGTTV---DLIYTKKLIKDRDN 656

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +     +TD       L +  E   +A + +  F+  +S+ELR+P+ ++IG  D+L+T
Sbjct: 657 NKLGVMTVLTDVS----DLIQAQEKAERAMQARTHFLATMSHELRTPIASMIGLIDILET 712

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               + + +Q  Y++ + +S+  LL LVNDILD + ++AG +KL+Y        +     
Sbjct: 713 K---NPSQEQLNYIKNLKSSTNHLLYLVNDILDFSQIEAGQLKLDYQPCRWLTEIGLSLI 769

Query: 657 SIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + A +     ++  +     KL +   D  R+ Q+ + +LSNA+ F+  GS + +     
Sbjct: 770 NFAQEAQHKGVKFNLFWQPTKLTTLTIDSIRVNQVINNLLSNAIKFTEAGS-ISVYIELT 828

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
               +  V + G  I ED  K +F+ F            G GLGLSI +  + +  G + 
Sbjct: 829 QHSLLVKVIDTGIGIHEDNIKRLFSPFEQAEKTISRTYGGTGLGLSICKQLVEMMNGKIE 888

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     TT+  ++P  +
Sbjct: 889 LHSQLNEGTTVIFKVPYSQ 907



 Score = 44.2 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 18/156 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E     QL    EI+ ++   + + D N    F N ++ E +          PS +E  
Sbjct: 548 AEKKAVQQLDLLNEIIESIPSMLLMQDTNNQRVFWNNNYKETFSQFWNHNNMQPSWEEYN 607

Query: 357 EF-LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-------NP 408
           +  L +A  L   ++     +N                LP+G T+ +I T        N 
Sbjct: 608 KSTLENATVLKTGIDINNTSKNNLR----------QTILPDGTTVDLIYTKKLIKDRDNN 657

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           + G + +  +++  +  + K    ++ +   +  +S
Sbjct: 658 KLGVMTVLTDVSDLIQAQEKAERAMQARTHFLATMS 693


>gi|257870079|ref|ZP_05649732.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257804243|gb|EEV33065.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 613

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 149/387 (38%), Gaps = 24/387 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  L  +++   +     +      + H+++GV      G++   N    SL  
Sbjct: 238 GQLAETFNQLGERIEETQEAMESERNRLDSVLSHMTDGVVATDRRGKVITINEMAMSLLN 297

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                 + G  I  +      Y            +I   +++       L       +++
Sbjct: 298 VTSEE-AVGQSILTLLQIDEEYTLRKLLESPDEMLIERPNNDIVGTNLILR------IDF 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I   +         + D    E           K ++ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SMIRRESGFISGLVAVMHDVTEQE-----------KNEQERREFVSNVSHELRTPLTSMR 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L L+ +D+G  +L    I  N
Sbjct: 400 SYIEALSEGAWQD-PEIAPNFLKVTLDETDRMIRMINDLLSLSRMDSGNAQLQLEYINFN 458

Query: 649 DLLNEVKQSIATKM--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +L++ V       +        I+     +      D  +++Q+   I++NA+ +S  G 
Sbjct: 459 ELVSFVLDRFDMMVTNENKKYVIRREFTKRELWVEVDTDKMIQVIDNIMNNAIKYSPDGG 518

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESF 764
            + +K    + + + S+ + G  IP+     +F+RF         Q+ G GLGL+I    
Sbjct: 519 VITVKLMETHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARARQQGGTGLGLAISREV 578

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           I  HGG +   S +   +T    +P +
Sbjct: 579 IKSHGGAIWAESRENRGSTFYIMLPYE 605


>gi|158421976|ref|YP_001523268.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS
           571]
 gi|158328865|dbj|BAF86350.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS
           571]
          Length = 586

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 161/385 (41%), Gaps = 16/385 (4%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G T  M  +L  +   E      +  Q   +    + +     +GRI+ +NPA   L   
Sbjct: 214 GSTAVMLTHLVGRRRAERALGDALSRQRAILASAIDSIVTVNVEGRIESANPATTRLLGW 273

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +   ++ G  +  + +            +L +          + L G  +      ++ +
Sbjct: 274 QPEEIA-GKPLGTLFSLPEGTTPTDFMTELSSTAKDG--GGVRELIGLRKDGGTVPVDVA 330

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I  + ++        + D    +RA           + +KN FV  VS+ELR+PLT+I G
Sbjct: 331 IGRMRDSGGQNLVAVLHDITERKRA-----------EVMKNEFVSTVSHELRTPLTSIAG 379

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL     GSL     + V   S +   L+ L+NDILD+  + +  +     T+ L +
Sbjct: 380 SLGLLAGGATGSLPEGAQRLVTIASQNCRRLVRLINDILDIEKMQSSGITFARDTVSLAE 439

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +     +  +    E+ + + +  +        D  RL+Q+ + +LSNA+ FS  GSTV 
Sbjct: 440 VAERSVEQNSGFALEHQVALTLEVEPGDLRVTGDADRLIQVLTNLLSNAVKFSPAGSTVE 499

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           +  AR       +V+++G  IPE    ++F RF    +    QR G GLGL+I     + 
Sbjct: 500 VSVARRGDHVRATVRDHGMGIPESFRSAIFTRFAQADNSDTRQRGGTGLGLAIAREIADH 559

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           H G +S  + +   T  +  +P+ E
Sbjct: 560 HDGTLSFETEEGVGTAFHLDLPALE 584



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 98/338 (28%), Gaps = 34/338 (10%)

Query: 112 LLSFENWLKFHHYIKLSKATEKLRKEGQS---FDLVAETQNDCAI---KIEGRVS----G 161
             SF  +    H  +    +  +R E QS     L  E+     I   + E R       
Sbjct: 40  FASFREFAASQHAREDLIYSSSIRAELQSIYEQLLTVESATRGFIITGEAEFRPPLDEDR 99

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISV-FKVLFDSLDFLVWHRDQAGDILWANI 220
           +    RI ++     E  E T    +L        ++L + +D                 
Sbjct: 100 TRILARIAAVTKFAVERPEHTDDLARLKRLAEAELRLLGEMIDA---RMHSDAT-----P 151

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKE-EIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
           +       +       I E+ +   E EI      +  +      T +TL      +  +
Sbjct: 152 AGSILQVRQSKGLMDQIAETVESIAEAEIGAINARTQEVRVVGQRTKTTLLALLGAAIAV 211

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
           V    +     +      E  + D L+    IL +   +I   +    ++  N +   L 
Sbjct: 212 VFGSTAVMLTHLVGRRRAERALGDALSRQRAILASAIDSIVTVNVEGRIESANPATTRLL 271

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQ 398
                 +A  P              LPE      +   + S  K     ++      +G 
Sbjct: 272 GWQPEEIAGKPLGTLF--------SLPEGTTPTDFMTELSSTAKDGGGVRELIGLRKDGG 323

Query: 399 TLHV---IVTSNPRGG--TIWMFENLTVQVDLETKYNT 431
           T+ V   I      GG   + +  ++T +   E   N 
Sbjct: 324 TVPVDVAIGRMRDSGGQNLVAVLHDITERKRAEVMKNE 361


>gi|320328955|gb|EFW84954.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 1170

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + + S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLADQSQALAD--QRDALDRNNEELSIAQAELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPGENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEM 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +F V+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +  +  +P
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717


>gi|312959787|ref|ZP_07774303.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
 gi|311285953|gb|EFQ64518.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
          Length = 1215

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 168/394 (42%), Gaps = 28/394 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            +M   +  +   E   N   +     ++     + V    G ++  N ++  ++  +  
Sbjct: 565 AYMRRQIKQRKMAERALNDQFEFMRALVNETPHPIYVRDRQGLLQTCNDSYLQVFDVKRE 624

Query: 473 RLSPGTHIR---NIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            +   + ++    +AA  ++Y+ +     ++G  L          ++ ++   +    DS
Sbjct: 625 DVIGKSAMQISTALAAEAAQYHADYQRVVAEGNPLILDRTLHIRGKKLTIYHWILPYRDS 684

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           + E   I       +  +V++++  +    L    E   +A+  K++F+  +S+E+R+P 
Sbjct: 685 IGEVQGI-------IGGWVDISERRQLFDELRAAKERADEANRAKSTFLATMSHEIRTPK 737

Query: 585 TNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             +IG  +L LK +  G L+      +E    S+  LL L+ DILD+A +++G + L   
Sbjct: 738 NAVIGMLELTLKRADQGHLD---RPAIEVAYNSAKDLLELIGDILDIARIESGRLSLAPE 794

Query: 644 TIVLNDLLNEVKQSIATKMHENNIR--IKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            + L +++  V +       +  +   ++   D      + D  R  Q+ S ++SNA+ F
Sbjct: 795 RVNLREVIASVVRVFDGLARQKTLSLLLEFKPDLDDTEVLIDPLRFKQVLSNLVSNAIKF 854

Query: 702 SSKGST-VILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGV 754
           + +G   + ++    +     +    V++ G  I  +    +F  F    + GQ  R G 
Sbjct: 855 TERGQVKIKVEVLPTDLPQQIEMKLVVEDTGIGISREDQMRLFEPFAQADNSGQLARSGA 914

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL I  S   + GG +S+SS     T ++  +
Sbjct: 915 GLGLVICRSLCAMMGGQLSLSSVPMVGTQVHVSL 948



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 61/161 (37%), Gaps = 10/161 (6%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
           +G    + +     +  ++ +  +  + L++     + L +     ++ RD+ G +   N
Sbjct: 553 TGLLLLISLTWNAYMRRQIKQRKMAERALNDQFEFMRALVNETPHPIYVRDRQGLLQTCN 612

Query: 220 ISYKK--NTETEGIVFQKAIGESRKLFKEEIK--KRMISSSALEKNFCETVSTLEHGNNK 275
            SY +  + + E ++ + A+  S  L  E  +         A         +    G   
Sbjct: 613 DSYLQVFDVKREDVIGKSAMQISTALAAEAAQYHADYQRVVAEGNPLILDRTLHIRGKKL 672

Query: 276 S--YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYE 310
           +  + I+   +S GE     G  +D+S+   + D+L    E
Sbjct: 673 TIYHWILPYRDSIGEVQGIIGGWVDISERRQLFDELRAAKE 713


>gi|86751330|ref|YP_487826.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574358|gb|ABD08915.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 877

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 149/380 (39%), Gaps = 16/380 (4%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F+NL  Q +LE     +  +  +   + S+ +     + R+      F  + +   N L 
Sbjct: 224 FDNLCAQFELERNTEIISLLLKDFQANASDWLWQTDSECRLVHVPDRFVEVARLPVNILR 283

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G  + ++                    +     E   +   +   +  +   +  P+ +
Sbjct: 284 -GAQLSDVLGMLCPEDGRCAAAVAAKMALREPMHEL--VVHVMIGGTQRLWSLTARPMLD 340

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                T          ER    + E     +  K+ F+  +S+E+R+P+  ++G  + L 
Sbjct: 341 HNGEFTGYRGVGRDVTER---WRAEQAEAENRAKSDFLAMMSHEIRTPMNGVLGLANSLL 397

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +K   L+ +Q   V  I  S   LL ++NDILDL+ ++AG ++        + L++ V+
Sbjct: 398 ETK---LDPEQQHAVTTIRDSGDNLLRILNDILDLSKLEAGRIEFEQVNFSPSVLVDAVR 454

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KA 712
             +        + +K+  D +L      D QR+ Q+   +  NA+ F+ +G   I+    
Sbjct: 455 SIVEPNARAKGLTLKIDVDPRLPPALTGDAQRIRQVLLNLAFNAVKFTDRGGVTIVLTCV 514

Query: 713 ARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            RD+        V + G  IP D   S+F  F        RR  G GLGL+I    +   
Sbjct: 515 RRDDAYATIEWQVTDTGIGIPLDRVGSLFTDFAQGDVSINRRFGGTGLGLAISRRIVEQM 574

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + ++S     +T    +
Sbjct: 575 GGAIDVTSKPGEGSTFRFSL 594


>gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1199

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 136/317 (42%), Gaps = 29/317 (9%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I+      R      +E L    ++ +I    +       + +++  +AE AL +  EA 
Sbjct: 634 IVHHCKGPRVWHSSEIESLRQLCVQLAIAIQQSTLFEQAQIEISERKQAELALQQAKEAA 693

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A+  K+ F+ ++S+ELR+PL  I+G+T +LK     +L S+Q   ++ I      LL 
Sbjct: 694 EAANRAKSEFLANMSHELRTPLNGILGYTQILKMH--DNLTSQQQDNLQTIQDCGGHLLT 751

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           L++DILDL+ ++A  M+L  + +   + +  +      +  + NI        +L  S  
Sbjct: 752 LIDDILDLSKIEAEKMELYPTELDFRNFIKSISDLFQMRASQKNIAFTCEELSQLPRSIY 811

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---------------------- 719
           AD +RL Q+   +L NA+ F++ G         + G++                      
Sbjct: 812 ADEKRLRQVLINLLGNAVKFTNSGGVTFKVGCLEGGEWGLGTIGNNEQRTTNNYQLPIIK 871

Query: 720 -IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSS 777
             F V++ G  I     + +F  F   + R     G GLGLSI +  + + GG + + S+
Sbjct: 872 LRFQVEDTGIGIEASKLEEIFLPFHQVSDRAYSTEGTGLGLSISQKLVKMMGGEIGVKSA 931

Query: 778 DEGVTTINC--RIPSKE 792
               +       +P  E
Sbjct: 932 LNKGSIFWVDLELPLVE 948


>gi|253569873|ref|ZP_04847282.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840254|gb|EES68336.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 631

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 130/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          +  +Y
Sbjct: 393 KAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PDIEDRKEMREY 449

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILD++ ++AG      S I +N  + E++QS+  ++ +  + +
Sbjct: 450 ADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTL 509

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ S  + NA+ F+  GS  +    +D     F V + G  
Sbjct: 510 TFTERLPECTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCG 569

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + E+ C+ VF RFV      Q  G GLGLSI +  I+  GG + + S +   +T    +P
Sbjct: 570 MSEEQCRHVFERFVKYNPFVQ--GTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627

Query: 790 SKE 792
            ++
Sbjct: 628 YQQ 630


>gi|192361677|ref|YP_001982922.1| putative sensor/response hybrid [Cellvibrio japonicus Ueda107]
 gi|190687842|gb|ACE85520.1| probable sensor/response hybrid [Cellvibrio japonicus Ueda107]
          Length = 916

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 20/323 (6%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +++++    +  + + G     A     DDE   L      + D +           Q
Sbjct: 172 RPLQDLSELAEQIGSGNQGNYQLRARSLDGDDEVAHLTIRFNAMLDRL-------QSQDQ 224

Query: 538 TMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +    +  +    ER     +   +   A + K+ F+  +S+E+R+PL  I+G T+LL 
Sbjct: 225 QLREQHDELELRVEERTAQWRQATASAEAASQAKSQFLAVMSHEIRTPLNGILGMTNLLL 284

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++   L  KQ ++      S   LL ++NDILD + V+AG ++L      LN L+ ++ 
Sbjct: 285 ETE---LTPKQKRFARVARRSGEDLLLIINDILDFSKVEAGKLELEIHPFQLNLLVEDLA 341

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
           +  A   H   + +   +     S   D  RL Q+ + +LSNA+ F+ +G     V L  
Sbjct: 342 ERYAPIAHAKGLELLCNTPLPPLSAEGDAARLAQVLTNLLSNAIKFTERGEVTLEVKLLL 401

Query: 713 ARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
             DN     F V++ G  I  +  + +FN F         +  G GLGL+I +  + L G
Sbjct: 402 REDNLLHLHFGVRDTGIGIRVEQAERLFNAFTQADSSMTRRYGGTGLGLAISQCLVELMG 461

Query: 770 GHVSISSSDEGVTTINC--RIPS 790
           GH+++ S     +      R+P+
Sbjct: 462 GHIALESEPGKGSYFYFELRLPA 484


>gi|288959952|ref|YP_003450292.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912260|dbj|BAI73748.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 687

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/516 (18%), Positives = 199/516 (38%), Gaps = 53/516 (10%)

Query: 294 DVSKEITVNDQL-------THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           DV  E   + +L           +IL ++  A+   D    + + NR   ++        
Sbjct: 61  DVDAEAPPDAELDGGLRAWRQATDILDSIDEALVALDGEYRVIYQNRRAEQI-------- 112

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---------NG 397
                + + L  +R          W+ W +   S  ++      T   P          G
Sbjct: 113 -----DQQPLAAIRGRRL------WEVWPQVAGSDLEALCRRTMTERQPTGVEKRLDGEG 161

Query: 398 QTLHVIVTSNP-RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            TL + +   P   G    F ++T +   E +     +   + ++ +S+       D R 
Sbjct: 162 TTLWLEIRFLPTAEGVGCFFRDITTRKRAEEEARASHERAVKILESISDAFYAVDNDWRF 221

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N     +W    + L                + +  G + F A   +  + R+    
Sbjct: 222 TYINRKAEQIWGRSRDTLLGLRTWEA--------FPKVLGSEAFEAQKRAVREGREMTIE 273

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +     + +E S+ P  +  ++  F ++T   +A++AL    E    A+  K  F+   
Sbjct: 274 VISPTLGNWVEASLYPSADGLSVY-FRDITARRQAQQALLTAKETAEAANLAKGKFLAAA 332

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S++LR PL  ++ F D+LK    GS  +    ++     +   L  L++ +LD++ +D+G
Sbjct: 333 SHDLRQPLQALLLFVDVLKPHVQGSQGATALMHLGRGLDA---LKELLDSLLDMSRLDSG 389

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           +++    T+ +  L   +  S         + + V  D    +   DR  L+++   ++ 
Sbjct: 390 VVEPTIETVSIAPLFEHIAASYRPVAAAKGLELHV--DPCAAAARTDRTLLIRMVRNLVE 447

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
           NA+ ++ +G  + ++  +  G  +  V++ G  IP D  + +++ F    +  R + RG+
Sbjct: 448 NALRYTEQG-RIDIECRQAGGRLLIEVRDTGIGIPPDHLERIWDEFHQVGNPERDRNRGL 506

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+IV     L    V + S     T+    +P 
Sbjct: 507 GLGLAIVRRLSQLLNHPVEVRSKPGRGTSFIIALPL 542


>gi|81427691|ref|YP_394689.1| two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104603|gb|AAD10264.1| putative histidine kinase [Lactobacillus sakei subsp. sakei 23K]
 gi|78609331|emb|CAI54377.1| Two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 632

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 149/407 (36%), Gaps = 46/407 (11%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G       NL+V+V+   + +   + +    + H+++GV      G I + N   +    
Sbjct: 235 GQLAIAVNNLSVRVEEAQEASESERRRLDSVMSHMTDGVIATDRRGNITIINETGQDFLN 294

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              + +   + ++ +    S  Y   D  +    ++  F D++           D +L  
Sbjct: 295 VTSDGVLGQSLLKVLK--ISEEYTLRDLLETQQVMVLDFSDQQDH---------DLILHV 343

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
               +      +T +        E+          K +  +  FV +VS+ELR+PLT++ 
Sbjct: 344 DFSLIQRETGYITGLVCVLHDVTEQQ---------KNEREQREFVSNVSHELRTPLTSVR 394

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L              +++     +  ++ ++ND+L L+ +D G  K+N   + LN
Sbjct: 395 SYIEALNDGAWQD-PEVAPNFLKVTQEETDRMIRMINDLLSLSRMDQGTAKMNLEFVNLN 453

Query: 649 DLLNEVKQSIATKMHE----------------------NNIRIKVISDGKLGSFVADRQR 686
           +    V       +                            I      +      D  +
Sbjct: 454 EFFGYVLDRFDMMIKRDQEHDNNASPRGTGKLPTDDPNKKYSITRDFTKRDLWVEIDTDK 513

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +Q+   I++NA+ +S  G  +  +    +   I S+ + G  IP      +F+RF    
Sbjct: 514 FMQVVDNIMNNAIKYSPDGGVITCRLLETHRHVILSISDQGLGIPRKDLGKIFDRFYRVD 573

Query: 747 --HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                ++ G GLGL+I +  I  H G V + S +   +T    +P +
Sbjct: 574 KARSRKQGGTGLGLAISKEVIEAHNGRVWVDSQEGKGSTFYISLPYE 620


>gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 800

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 131/258 (50%), Gaps = 15/258 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  + ++ L  + + L+ + + K+ F+ ++S+ELR+PL +I+  +++L  +K  +L+ ++
Sbjct: 374 DLQQTKKELELQTKQLQASSQYKSEFLANMSHELRTPLNSILILSEMLLENKNETLSEEE 433

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++   I ++ T LL L+ND+LDL+ ++A  +++    + + +L  ++++       +  
Sbjct: 434 QEFAHIIYSAGTDLLGLINDVLDLSKIEAKKLEMICGEMSIQELCTQLERHFTPIAQQKQ 493

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-----------ILKAAR 714
           I  +++    +   F  D +RL QI   +LSNA  F+ +GS +            ++  +
Sbjct: 494 IDFQILLQKPVPDLFYTDEKRLQQIIKNMLSNAFKFTEQGSVIMQVEQMQKEQMTVEMEK 553

Query: 715 DNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
            +    + + ++ G  I E+  + +F+ F         +  G GLGLSI +  + L GG 
Sbjct: 554 KSDTWLVITCQDTGIGISEEQQQLIFDAFHQADGAIARKYGGTGLGLSISKELVTLLGGS 613

Query: 772 VSISSSDEGVTTINCRIP 789
           +++ S     +     IP
Sbjct: 614 ITVHSIQGKGSIFTVYIP 631


>gi|329848033|ref|ZP_08263061.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843096|gb|EGF92665.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 1140

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 4/258 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            Q  +      D  +A+  +  K   L ++   K+ F+ ++S+ELR+PL + +    LL 
Sbjct: 435 EQAAMLEAQRDDLSQAKDEVDRKARELEQSSRYKSDFLANMSHELRTPLNSSLILAKLLS 494

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +  G+L  +Q ++ + I +S   LL L+NDILDL+ ++AG M+++  ++ L  L ++++
Sbjct: 495 DNSEGNLTEEQVEFAQTIQSSGNDLLALINDILDLSKIEAGQMEIHTESVSLKRLASDME 554

Query: 656 QSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      ++  +++     +G   +   DRQRL Q+   +LSNA  F+  G  V L   +
Sbjct: 555 RVFTPIANQKRLKMTARLGEGVPETVTTDRQRLEQVLKNLLSNACKFTEHGH-VELAILK 613

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
           D    +F+VK+ G  I  +    VF  F         +  G GLGLSI      L GG++
Sbjct: 614 DGDRIVFAVKDTGIGISAEHQHQVFEAFRQADGTISRKYGGTGLGLSISRELSRLLGGNL 673

Query: 773 SISSSDEGVTTINCRIPS 790
           S+ S  +  +T +  IP 
Sbjct: 674 SVISQVDRGSTFSLSIPL 691


>gi|307721459|ref|YP_003892599.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
 gi|306979552|gb|ADN09587.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
          Length = 764

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  +   +A + K  F+ ++S+E+R+PL  I+GF +LL       +++K   Y++ 
Sbjct: 141 QKLIDARQEALRAAQAKEYFLSNMSHEIRTPLNAILGFVNLLMDE---DISNKHRNYLDI 197

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+++NDILD + + +G   +      L++ L+   +      +  +I I   
Sbjct: 198 ILNSGENLLSIINDILDFSKLRSGEFNIEAKVFSLHEELSHTMELFVASANSKDITITSF 257

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D ++      D  R+ QI S  LSNA+ F+  G  + ++A+  N     SV +NG  I 
Sbjct: 258 IDPRIPKELFGDVLRIKQIVSNFLSNAIKFTPVGGVIKVEASCHNQQLTISVNDNGVGIN 317

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++  +++F  F          + G GLGL I      L  G V ++S     +T    IP
Sbjct: 318 KEDLQNIFVAFTQARSSEHDNKEGSGLGLCISHQLAELMHGKVHVNSKVGEGSTFWLDIP 377

Query: 790 SK 791
            +
Sbjct: 378 VE 379


>gi|260903020|ref|ZP_05911415.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037]
 gi|308108337|gb|EFO45877.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037]
          Length = 785

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 7/266 (2%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +++ L  +        + +  +    L  + +   +A + K+SF+  +S+ELR+P+  +
Sbjct: 229 VAVMLLVGSFLYQLQYRMHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGV 288

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G + L+       +     ++++ I  S   L+ ++NDILD + V+   ++L  +   L
Sbjct: 289 LGISQLIAEETKEPVT---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEEAPFHL 345

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +L  V  +I   + E +I + V +D      F  D  RL QI   +  NA+ F+++G 
Sbjct: 346 EQVLTPVCSAIQPLIDEKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNEGH 405

Query: 707 T-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             +  +   ++   +  V + G  I  D    VFN F        RR  G GLGL+IV+ 
Sbjct: 406 VLIRTELNSEDKQLLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKK 465

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              L GG +++ S +   T     +P
Sbjct: 466 LTELMGGSITLKSVEGVGTQFIVTLP 491


>gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1261

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 134/685 (19%), Positives = 251/685 (36%), Gaps = 103/685 (15%)

Query: 192  ISVFKVLFDSLDFLVWHRDQAGD---ILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
            + + +   D+    +   D       + + N  +++ T   G    + IGE+ +  + E 
Sbjct: 338  LRLLQRAVDASSNGIVIADAQLTDKPLTYVNSGFERTT---GYSADEVIGENCRFLQGED 394

Query: 249  --KKRMISSSALEKNFCETVSTL----EHGNNKS--YKIVRVLNSFGE----AGIAIDVS 296
              +  +I          ET   +    + G        I  V +  G      GI  D+S
Sbjct: 395  IDQPNLIEMRNSIAEGRETKIIVRNYRKDGTPFWNKLSISPVHDEEGNLTHFIGIQEDIS 454

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ--------------FHNRSFVELWEID 342
              I          E L        +  + + +               + +    +L  I 
Sbjct: 455  DRIFAEVAQKQAEEELRRSET---LLKETQRIAKVGGWSWDLIDHKYWWSEQMYQLTGIH 511

Query: 343  LAFLATNPSNDELLEFLR-SANKLPEQLNWKTWKENIFSV--YKSSETHKDTWHLPNGQT 399
                    S +++ + +         Q  ++T ++ I S   +++ +      HL     
Sbjct: 512  PD--DPISSLEQIEQRIHPEDRSRVRQATFETLRQGITSTIEFRTLDQDNTIHHL----I 565

Query: 400  LHVIVTSNPRGGTIWMF---ENLTVQVDLETKYN----------------TLVKVQGETI 440
                V  + +G  I ++   ++++     E                    T V+   + +
Sbjct: 566  SRTQVQQDDQGQIIRLYGTLQDISDYKQREEALRLFSEEIACKTGEEFFHTCVQYLAQVL 625

Query: 441  DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN--RLSPGTHIRNIAATCSRYYNESDGWD 498
                  +A    + + KL   AF       EN    + GT    +      Y+  +    
Sbjct: 626  QVKYAVIAEVTDETKQKLRTLAFWDGDSLRENLEYDASGTPCELVINQAWCYHPANLQHY 685

Query: 499  LFAAIITS-----------FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                I+ +             +      G + ++  + LE ++    + + ++       
Sbjct: 686  FPDNILLAKLGVESYWGIPLANSTGESIGLIYIMDVAPLEINL----DHEMIMKIFATRT 741

Query: 548  SVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                ER      L +  EA   A+  K++F+ ++S+ELR+PL  I+GF+ LL  S   S 
Sbjct: 742  EAELERQHFEITLRQAKEAAEAANRSKSTFLANMSHELRTPLNAILGFSQLLSRSIYLSG 801

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + K S  +E I +S   LL L+N +LDL+ ++AG MK+      L  LL  +++    K 
Sbjct: 802  DEKDS--LEVIHSSGQHLLTLINQVLDLSKIEAGRMKMQLRKFDLFHLLQSLERMFTQKA 859

Query: 663  HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
            ++ N+ +K      +      D  +L QI   +LSNA+ F+ +G  ++    R +     
Sbjct: 860  NDKNLELKFDCHPDIPQLIYTDETKLRQILINLLSNAIKFTPRGEIILRVYPRWSNLEAI 919

Query: 718  ----------DFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFIN 766
                         F VK+ G  I  D CK +F  FV   + +  + G GLGL I + FI+
Sbjct: 920  SSSRLPAGTYALSFEVKDTGVGIAPDECKYLFQAFVQTLSGQQAQEGTGLGLKISQQFIH 979

Query: 767  LHGGHVSISSSDEGVTTINCRIPSK 791
            L GG +S+ S     TT    IP +
Sbjct: 980  LIGGEISVESDLGRGTTFQFMIPVE 1004


>gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 1284

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/407 (21%), Positives = 159/407 (39%), Gaps = 46/407 (11%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                + +     +     +DH    + +   +      NP+   L     +++  G   
Sbjct: 358 ALRKSQHRLAQSEERLRALLDHSPAIMHLKDRNHAFLQLNPSMEKLLGLTRDQVL-GKTD 416

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLSDSVLEYSII-PLPNA- 536
           R +A          + W++ A ++ +   E +  +++         V+ + +  P  NA 
Sbjct: 417 RELAVMPD---GTRERWEIEARVMATGRAEEQIYAMEAPEGSRQLRVIRFPVHDPTSNAV 473

Query: 537 -QTMLTFVNVTDSVRAERALTEKNEALRKA-------------------------DEIKN 570
                  +++TD  RA R L E ++ L                             + K 
Sbjct: 474 VGVGAVGIDITDQERANRELKEMSQTLEHKVWERTRELAVANAELAKAKHEAESAAQAKA 533

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           SF+ ++S+E+R+P+  +IG   L  +++   L+ +Q  YVE I  S   LL ++NDILDL
Sbjct: 534 SFLANMSHEIRTPMNAVIGMAHLALSTQ---LDPQQRDYVEKIQRSGQHLLGILNDILDL 590

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + ++AG +++      L  LL  V   ++ +     + + V     +  S   D  R+ Q
Sbjct: 591 SKIEAGKLEIEQIDFSLERLLRTVGDLVSERAAAKQLELVVDVQPDVPDSLRGDPLRIRQ 650

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFV 743
           +     +NA+ F+ +G  VI  A              F V++ G  I  D    +F  F 
Sbjct: 651 VLINFTTNAVKFTERGEIVIRVARCAGEHAESRVRLHFEVRDTGIGIDADAIPRLFRSFE 710

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  RR  G GLGL+I    + L GG + + S     +T    +
Sbjct: 711 QADSSTTRRYGGSGLGLAISHRLVTLTGGTIGVQSELGKGSTFWFEL 757



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 68/233 (29%), Gaps = 34/233 (14%)

Query: 116 ENWLKF-HHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGI 174
             W+      + L +  E+      S   V  +     + + G  + +            
Sbjct: 311 GLWIPALGSALILEQDMEEALSSYLSTRTVVASMAAAIMLLIGVAAWA------------ 358

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
                       +L+      + L D    ++  +D+    L  N S +K          
Sbjct: 359 ------LRKSQHRLAQSEERLRALLDHSPAIMHLKDRNHAFLQLNPSMEKLLGLTRDQVL 412

Query: 235 KAIGESRKLFKEEIKKR--MISSSALEKNFCETVSTLEHGNN-KSYKIVRVLNSF----- 286
                   +  +  ++R  + +         E +  +E     +  +++R          
Sbjct: 413 GKTDRELAVMPDGTRERWEIEARVMATGRAEEQIYAMEAPEGSRQLRVIRFPVHDPTSNA 472

Query: 287 --GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
             G   + ID++ +   N +L    + L +      ++++ R L   N    +
Sbjct: 473 VVGVGAVGIDITDQERANRELKEMSQTLEH-----KVWERTRELAVANAELAK 520



 Score = 38.8 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 20/164 (12%)

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            G A  A+  S+      +      +L +    + + D+N      N S  +L  +    
Sbjct: 352 IGVAAWALRKSQHRLAQSE-ERLRALLDHSPAIMHLKDRNHAFLQLNPSMEKLLGLTRDQ 410

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-QTLHVIV 404
           +             R    +P+    +   E        +E        P G + L VI 
Sbjct: 411 VLGKTD--------RELAVMPDGTRERWEIEARVMATGRAEEQIYAMEAPEGSRQLRVIR 462

Query: 405 ------TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
                 TSN   G   +  ++T Q     + N  +K   +T++H
Sbjct: 463 FPVHDPTSNAVVGVGAVGIDITDQ----ERANRELKEMSQTLEH 502


>gi|17232819|ref|NP_489367.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17134466|dbj|BAB77026.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 559

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 158/416 (37%), Gaps = 49/416 (11%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           +N    +  +       +     ++ ++   + +   +      N     +   +E  + 
Sbjct: 139 QNYERLLQSQYNLRRSEERYRLLVEGVTNYAIFMLDSNANFTTWNIGAERILGYQEAEI- 197

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS---IIP 532
            G     I A       E+        ++     E  S +    +  D    ++   I P
Sbjct: 198 IGQPFELIFA------PEAIERGQPQQVLKQALTEGFSRENRWHIRKDGTFFWAHCLITP 251

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTE-------KNEALRKADEIKNSFVQHVSYEL 580
           L +             ++T+  +AE    +              A+  K+ F+  VS+EL
Sbjct: 252 LRDENGNLRGFSKIMQDITERKQAEEEKEQLLLREQAARAEAEAANRSKDDFLAIVSHEL 311

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+T IIG+  +L+T  L    ++ S  +E I  ++ + + L+ D+LD++ +  G + L
Sbjct: 312 RTPMTAIIGWAGMLQTGALD--EARASLALETIERNANLQMQLIEDLLDISRIVRGELSL 369

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +   + L +++ +  + + +      I+IK   D  +     D  RLLQ+   +L+NA+ 
Sbjct: 370 SIDLVDLVEVITDAIEVVQSLADNKGIQIKSRPDTSIDKIWGDSDRLLQVVLNLLTNAIK 429

Query: 701 FSSKGSTVILKAARDNG---------------------DFIFSVKNNGSSIPEDMCKSVF 739
           F+  G  + +  +++ G                          V + G  I  D    +F
Sbjct: 430 FTPNGGRIEVCLSKELGTGDWGLGNRGDETNVSCPIPHYAQIQVIDTGQGISADFLPHIF 489

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
            RF        R  +G+GLGL+I    + LHGG +   S       T   ++P  E
Sbjct: 490 ERFRQADSSHTRSNKGLGLGLAIARHLVELHGGTIQAQSQGIGQGATFTVKLPITE 545



 Score = 37.2 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 22/151 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAI---AIF--DQNRYLQFHNRSFVELWEIDLAFLATNP 350
            + +     L  + E    L   +   AIF  D N      N     +     A +   P
Sbjct: 142 ERLLQSQYNLRRSEERYRLLVEGVTNYAIFMLDSNANFTTWNIGAERILGYQEAEIIGQP 201

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTL--HVIVTSN 407
                          PE +     ++ +        + ++ WH   +G     H ++T  
Sbjct: 202 FELIFA---------PEAIERGQPQQVLKQALTEGFSRENRWHIRKDGTFFWAHCLITPL 252

Query: 408 PRG-----GTIWMFENLTVQVDLETKYNTLV 433
                   G   + +++T +   E +   L+
Sbjct: 253 RDENGNLRGFSKIMQDITERKQAEEEKEQLL 283


>gi|332992628|gb|AEF02683.1| two-component hybrid sensor and regulator [Alteromonas sp. SN2]
          Length = 687

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 149/382 (39%), Gaps = 23/382 (6%)

Query: 425 LETKYNTLVKVQGETID--HLSEGV--AVFGP---DGRIKLSNPAFRSLWKTEENRLSPG 477
           LET  NTL     + I    L + +    FG    D ++       R+L  + +   S  
Sbjct: 49  LETAINTLSSNHQKLISLPSLPDSISNMYFGTSQLDAKVNQYIGQARALVNSPQCSSSIV 108

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I        +  +    ++L A    S  D   SL+  L L +  +L      +    
Sbjct: 109 ITIEQATRLLEQLNSVVYMFELEA---KSHVDAVSSLEFYLWLATIFLLGVEAFFIFAPM 165

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  +     A      +    ++A+  K+ F+  +S+ELR+P+  + G  +L   +
Sbjct: 166 DRKIKKTIQHLYEASEKAETEALKAQEANRAKSEFLSSMSHELRTPMNGLFGMIELAMDN 225

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              S N     Y+     +   LL L+NDILDL+ ++AG + +    + L  LL+EV   
Sbjct: 226 PSKSEN-----YLRKAKTAGRQLLTLINDILDLSKIEAGKIVVGKGPVDLLQLLDEVVSI 280

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-- 714
                    +         L      D  R+ QI   +LSNA+ F+  GS V L  ++  
Sbjct: 281 QRIYCQNKGLDFHYNKQQTLAPIIQGDITRIAQILHNLLSNAIKFTESGS-VTLSVSQAV 339

Query: 715 --DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                  +FSVK+ G  I  D   ++F +F        R   G GLGLSI +    L  G
Sbjct: 340 TASGNTLLFSVKDTGIGIDSDKLSTIFQKFEQADQSTTRHYGGTGLGLSIAKELAQLMDG 399

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
           ++  +S+    +     +P  E
Sbjct: 400 NILATSTLGAGSEFTLTLPVVE 421


>gi|298374183|ref|ZP_06984141.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268551|gb|EFI10206.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 1045

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 105/517 (20%), Positives = 217/517 (41%), Gaps = 57/517 (11%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE---LLEFLRS 361
           L+   ++ +N+ +        + L        E  +ID+  L  N + +E     +F+ +
Sbjct: 411 LSRYRDLFNNMPLPYI----RQRLI------REGTQIDVQVLDVNHAFEEKIAPKDFVVN 460

Query: 362 ANKLPEQLN-----WKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRGGTI-W 414
                E  N     +      + +V +S ++    ++  P G    +I+        +  
Sbjct: 461 KRG-KEIANLIGGSYPLLLSAVPTVLESGKSFTYEYYFEPTGLYYTIIIMPTSEENVVDA 519

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            F ++T     +T    +       ++              +              E+++
Sbjct: 520 FFIDITDIHKFQTHLKAMNHKLAMALEAAD-----------LLPWRYNLAEEKIIYESKV 568

Query: 475 SPGTHIRNIA----ATCSRYYNESDGWDLFAAIITSFDD------ERKSLQGTLELL--- 521
            PG +I            + Y         A +  +FDD      ++   +  LE L   
Sbjct: 569 HPGDNIETAEVHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIPG 628

Query: 522 --SDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                  E  ++   +A       + + +++T+  + E  L    +   +++++K++F+ 
Sbjct: 629 EDRHEWEEIQVMVEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFLA 688

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I+GF+++L ++   +L  K  ++ + I  ++++LL L+NDILDL+ ++
Sbjct: 689 NMSHEIRTPLNAIVGFSNILAST--DNLEDK-KEFADIIENNNSLLLQLINDILDLSKIE 745

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG ++  Y  + +N +L +++QS   K    +++I      +      DR RL Q+   +
Sbjct: 746 AGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMINL 805

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           L+NAM F+  G        RD+    F V++ G  IPE+  K +F RFV      Q  G 
Sbjct: 806 LNNAMKFTQAGLISFGYKLRDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTFAQ--GT 863

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGLSI E  +    G + + S +   +     +P +
Sbjct: 864 GLGLSICEMIVTQMKGTIGVDSMEGKGSKFWFTLPFQ 900


>gi|229587665|ref|YP_002869784.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229359531|emb|CAY46372.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 595

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 148/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    GR++  NP  +     +E RL  G               
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEERLGQG---------LGEALV 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + Q  +    +      
Sbjct: 308 RPELDEQLQLVLRGGSLERAPEDLEVEVEGELRLLTYSLTPVSHTQGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     L +       +S+++  ++
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLFRERAKFPPDSREADLLD 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL      + DLL   +       +  N+ + V
Sbjct: 419 TVNEEMQRLMQLINDLLNFSRYQNGLQKLTLGPCDVTDLLEHARARFVEPANVQNVELMV 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            +   L    AD+ +L ++   +L NA+  +  G  + L+A R     I SV++NG  I 
Sbjct: 479 EAQSDLPRLYADQAQLERVLDNLLGNALRHTPNGGQIRLQARRHGERVIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 97/308 (31%), Gaps = 51/308 (16%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           ++ ++   FG    A+   +   V++ L        +L ++   + + D+   L+  N  
Sbjct: 227 EMNQLTRRFGIMAEALRQHQATNVDELLAGQQRLQAVLDSIDDGLLMIDRQGRLEHLNPV 286

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
                  D   L            L  A   PE            S+ ++ E  +     
Sbjct: 287 AQRQLGWDEERLGQG---------LGEALVRPELDEQLQLVLRGGSLERAPEDLEVEVE- 336

Query: 395 PNGQ----TLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETID------ 441
             G+    T  +   S+ +G   G + +  ++T Q   E   +  V      +       
Sbjct: 337 --GELRLLTYSLTPVSHTQGHILGAVMVLHDVTEQRAFERVRSEFVLRASHELRTPVTGM 394

Query: 442 HLSEGV----AVFGPDGR----IKLSNPAFRSLWKTEENRLSP-------------GTHI 480
           H++ G+    A F PD R    +   N   + L +   + L+                 +
Sbjct: 395 HMAFGLFRERAKFPPDSREADLLDTVNEEMQRLMQLINDLLNFSRYQNGLQKLTLGPCDV 454

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERK--SLQGTLELLSDSVLEYSIIPLPNAQT 538
            ++       + E         ++ +  D  +  + Q  LE + D++L  ++   PN   
Sbjct: 455 TDLLEHARARFVEPANVQNVELMVEAQSDLPRLYADQAQLERVLDNLLGNALRHTPNGGQ 514

Query: 539 MLTFVNVT 546
           +       
Sbjct: 515 IRLQARRH 522


>gi|119509388|ref|ZP_01628537.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
 gi|119466002|gb|EAW46890.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
          Length = 1508

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 10/244 (4%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
               L    +    A + K++F+ ++S+E+R+P+  ++G T LL  +   +LN +Q  + E
Sbjct: 867  REELEIARQEAELASQAKSAFLANMSHEIRTPMNAVLGMTGLLLET---NLNREQRDFAE 923

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK- 670
             I  S   LL L+N+ILDL+ ++AG M L      L+  + EV + +A + H+  + I  
Sbjct: 924  TIRISGDALLCLINEILDLSKLEAGEMFLETLDFDLSTCVEEVLELLAPQAHKQELEIAG 983

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNN 726
            +I          D  RL QI   ++ NA+ F+S G  V+    L    +     FSV + 
Sbjct: 984  LIHRNVPVHLQGDASRLRQILMNLVGNAIKFTSTGEIVVRAELLSQTPNTVTIHFSVTDT 1043

Query: 727  GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I  +    +F  F         +  G GLGL+I +  ++L GG + ++S     +  
Sbjct: 1044 GIGISSEDQNKLFQPFTQVDASITRKYGGTGLGLAISQQLVSLMGGTIGVNSQLGKGSQF 1103

Query: 785  NCRI 788
              ++
Sbjct: 1104 WFKL 1107



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 16/56 (28%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            ++  +T +   E             +D  S  V V    GRI   N A       
Sbjct: 381 LIYREVTERTRTEEVLKQERNFISAIVDTASVLVVVMDLQGRIVRFNKACEQTTGY 436


>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040580|gb|ACT57376.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 766

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/427 (20%), Positives = 184/427 (43%), Gaps = 48/427 (11%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            ++ T +     I +  +LT +  LE +Y    +   + I+  SE + ++  + R+ + N
Sbjct: 349 QMMRTISGGMNIIGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCN 408

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             ++  +   ++ L PG          +R   +           TS  +  + +   ++L
Sbjct: 409 ANYQKAYGLPDHVLVPGN---------ARSIIQDAQTRPIIEYRTSDPERSQDMSKEIKL 459

Query: 521 LSDSVLEYSIIPLPNAQTMLT-------FVNVTDSVRAERAL------------------ 555
                L+ +     +  T+           N      ++R L                  
Sbjct: 460 ADSRWLQINEWCTHDGGTISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQK 519

Query: 556 ----------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS- 604
                       + E    A++ K+ F+  +S+ELR+PL  I+GF++++K    G L S 
Sbjct: 520 TELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSV 579

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K  +Y + I  S   LLN++N+IL+++ ++   + ++     L  ++NE  + I +    
Sbjct: 580 KYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQS 639

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            NI+I+     +L  F AD++ + +I   ILSN++ F++    ++++ ++     I ++ 
Sbjct: 640 KNIKIEKKIPSEL-FFNADKRIIKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIA 698

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP+   + +   F    ++      G GLGL+I ++  NLHGG + I S +   T
Sbjct: 699 DTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGT 758

Query: 783 TINCRIP 789
            +   +P
Sbjct: 759 IVTICMP 765



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 68/186 (36%), Gaps = 26/186 (13%)

Query: 289 AGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIA+D+++    E    +      + +   + A+ ++D+N  L   N ++ + + +   
Sbjct: 361 IGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDH 420

Query: 345 FLATNPSNDELLE-----FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
            L    +   + +      +      PE               +S +  K+   L + + 
Sbjct: 421 VLVPGNARSIIQDAQTRPIIEYRTSDPE---------------RSQDMSKEI-KLADSRW 464

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKL 458
           L +       GGTI +  ++T+    + +     +    TI+ LS    +       + +
Sbjct: 465 LQINEWCTHDGGTISVGTDITLLKHNQAQLRESKRRLKATINDLSTSRQILERQKTELSI 524

Query: 459 SNPAFR 464
           +N  ++
Sbjct: 525 ANAKYQ 530



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 115/327 (35%), Gaps = 34/327 (10%)

Query: 139 QSFDLVAETQNDCAIKIEGR----VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           Q F +   +  D  I++  +    +SG        ++ GI  +L E     K+ +     
Sbjct: 330 QIFHMRHASGADIWIQVRAQMMRTISGGM------NIIGIAMDLTEKYHLEKRYAEADQR 383

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
                +     +   D+   ++  N +Y+K       V       S  +   + +  +  
Sbjct: 384 LSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGNARSI-IQDAQTRPIIEY 442

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVR-VLNSFGEAGIAIDVS----KEITVNDQLTHTY 309
            ++  +   +    ++  +++  +I     +  G   +  D++     +  + +      
Sbjct: 443 RTSDPERSQDMSKEIKLADSRWLQINEWCTHDGGTISVGTDITLLKHNQAQLRESKRRLK 502

Query: 310 EILHNLTVAIAIFDQNR-YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             +++L+ +  I ++ +  L   N  +    E + A  A N +  E L  +    + P  
Sbjct: 503 ATINDLSTSRQILERQKTELSIANAKYQV--EKERAETA-NKTKSEFLAKMSHELRTPLN 559

Query: 369 LNW---KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
                 +  K+ IF    S + ++        Q +H           + M  N+     +
Sbjct: 560 AILGFSEVIKKEIFGELGSVKYYEYA------QDIHYSGQ-----HLLNMINNILEMSKI 608

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGP 452
           ET+  ++ K   + I  ++EG+ + G 
Sbjct: 609 ETEKISIDKQNADLIPIINEGIRLIGS 635


>gi|229074769|ref|ZP_04207788.1| hypothetical protein bcere0024_13240 [Bacillus cereus Rock4-18]
 gi|229096068|ref|ZP_04227042.1| hypothetical protein bcere0020_13170 [Bacillus cereus Rock3-29]
 gi|229115025|ref|ZP_04244436.1| hypothetical protein bcere0017_13200 [Bacillus cereus Rock1-3]
 gi|228668441|gb|EEL23872.1| hypothetical protein bcere0017_13200 [Bacillus cereus Rock1-3]
 gi|228687360|gb|EEL41264.1| hypothetical protein bcere0020_13170 [Bacillus cereus Rock3-29]
 gi|228708367|gb|EEL60521.1| hypothetical protein bcere0024_13240 [Bacillus cereus Rock4-18]
          Length = 591

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         EN L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------ENFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHRVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L    +N    F V+++G
Sbjct: 463 ELTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVALVIHTENNGLTFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|323692858|ref|ZP_08107084.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503087|gb|EGB18923.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 939

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 178/466 (38%), Gaps = 52/466 (11%)

Query: 357 EFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +FLR+          ++++          +S  +  +   + +G+   V          I
Sbjct: 333 DFLRNTLSAQHPVYDIDFRRIYPEGLIWVRSRFSIAE---IKDGRVSKV----------I 379

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFR--SLWKTE 470
           +    +  Q   E +     ++  E+  ++  G++VF      I L   +F+  +L    
Sbjct: 380 FANMQIHEQKMKELEEQQQKRLYFES-QNIIRGLSVFYHSVFYIDLLTESFQPFNLMDDL 438

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG-----TLELLSD-- 523
             RL   T    +    S + +E D       +  S  D R+ + G      LE   +  
Sbjct: 439 ACRLGSSTDYEYLKTVYSYFIHEEDRKRFMEEL--SACDIRRRITGGDMIYALEYRRNYG 496

Query: 524 ---SVLEYSIIPLPNAQTMLT---------FVNVTDSVRAERALTEKNEALRKADEIKNS 571
                +   II   +   +                   R  +AL    EA ++A+E K++
Sbjct: 497 GAYGWMRMHIILAESRNGVPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKQANEAKSN 556

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+++R+PL  I G + +  +        K    ++ I+ SS  L+ L+ND+LD++
Sbjct: 557 FLAQMSHDIRTPLNAITGMSSIALSQAEDP--EKVRDCLKKITLSSHHLIELINDVLDMS 614

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQI 690
            ++ G ++L  +   L +LL +V+  ++ +       +   +          D  R+ Q+
Sbjct: 615 KIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQELCFHNPKSPHDHLCGDAGRIRQV 674

Query: 691 FSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
              +++NA+ ++  G  + +     +      G  +F+V + G  + +D    +F  F  
Sbjct: 675 LINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCLVFTVADTGIGMSKDFLDYIFVPFSR 734

Query: 745 NAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                    +G GLG+ I    +    G++ + S     +     +
Sbjct: 735 AEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESEPGKGSRFTVTL 780


>gi|262171204|ref|ZP_06038882.1| sensor histidine kinase [Vibrio mimicus MB-451]
 gi|261892280|gb|EEY38266.1| sensor histidine kinase [Vibrio mimicus MB-451]
          Length = 701

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 131/279 (46%), Gaps = 17/279 (6%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E  II + +         +    +    L  +    + + + K++F+  +S+E+R+P+  
Sbjct: 280 EGEIIDIRHKNQDEIRHLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNG 339

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   +L   +   L +KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS   
Sbjct: 340 VLGTAQILLKDE---LTAKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFP 396

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  ++  +K   ++   E  ++ ++ SD      +  D+ RL QI   +LSNA+ F+ +G
Sbjct: 397 LRSIIGSIKSIYSSLCFEKGLQFQLHSDIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQG 456

Query: 706 STVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             V +  + +N D        V+++G  IP+D    +F  F        RR  G GLGL+
Sbjct: 457 -FVSVGLSEENIDDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLA 515

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI------PSKE 792
           IV+    L  G VS+ S     T    R+      P KE
Sbjct: 516 IVKQIAELMSGTVSVQSEVGQGTCFEVRVKLAASEPIKE 554


>gi|149280707|ref|ZP_01886817.1| sensor histidine kinase/response regulator fusion protein
           [Pedobacter sp. BAL39]
 gi|149228531|gb|EDM33940.1| sensor histidine kinase/response regulator fusion protein
           [Pedobacter sp. BAL39]
          Length = 1160

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 18/260 (6%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A  A++ K + L  + + K+ F+ ++S+ELR+PL +I+    +LK ++  +LN  Q +Y
Sbjct: 470 QAREAISLKAKELEVSSKYKSEFLANMSHELRTPLNSILILARILKENRPENLNEDQIKY 529

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  +   LL L+NDILDL+ +++G + L    +    +   ++   +      +I  
Sbjct: 530 AGVIHNAGNDLLTLINDILDLSKIESGKVDLILEPVKPESVAYSMESLFSELAKSKHIEF 589

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------------- 714
             +    L  S + D+ R+ Q+   +LSNA  F+ +   +     R              
Sbjct: 590 STLLGNNLPDSIITDQSRVEQVAKNLLSNAFKFTPEQGKITFSIQRAAAGTLFYSDQLKD 649

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   +V + G  I E   K +F  F     +   +  G GLGLSI +   N+ GG 
Sbjct: 650 TSEDILAIAVTDTGIGIAESKQKLIFEAFQQEDGSTSRKYGGTGLGLSISKELANIMGGE 709

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S     +T    IP K
Sbjct: 710 IQLKSKPGEGSTFTFFIPEK 729


>gi|121591384|ref|ZP_01678667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           2740-80]
 gi|121546763|gb|EAX56935.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           2740-80]
          Length = 727

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        ++L EV  
Sbjct: 320 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V ++A
Sbjct: 376 LQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA 435

Query: 713 ARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  D  F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 436 LRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|94501038|ref|ZP_01307562.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
 gi|94426785|gb|EAT11769.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
          Length = 640

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    EA   A++ K+ F+  +++ELR+P+  ++G   LL+ ++   L+ +Q++YV+ 
Sbjct: 247 KDLIRAREASESANKAKSEFLAVMTHELRTPMNGVLGMLQLLQGTQ---LSKEQNEYVDV 303

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S   LL L+NDILD + ++ G + L+     L + L  +  S      +  ++  V 
Sbjct: 304 AINSGDHLLGLINDILDFSKIEQGRIDLDEQYFDLVESLKSLCDSFTPIAQKKGLQFNVH 363

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNG 727
                  +V  D+ RL Q+   ++ NA+ F+  GS       L    D  +    V++ G
Sbjct: 364 FMTHTNLWVKTDQTRLKQVLLNLMGNAVKFTDTGSINLSLQDLSIEDDEVELSIVVQDTG 423

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +     +F+ F         Q  G GLGL+I +  +   GG + + S  +  +T  
Sbjct: 424 KGINQAQLSRIFDAFQQEDASISRQYGGTGLGLAISKQLVEKMGGKLEVQSEKDRGSTFI 483

Query: 786 CRI 788
           CR 
Sbjct: 484 CRF 486


>gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 636

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 7/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL    E+   A+  K+  +   S+E+R+PL  IIG + LL  +    L+++Q+ Y + 
Sbjct: 107 RALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDT---PLSAEQATYAKA 163

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL L +++LD A ++AG ++L+    VL+ L+ ++ + +A +     + I   
Sbjct: 164 VKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAAD 223

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSI 730
            D +L  S + D  RL Q+   +  NA+ F+  G   ++    D  D     V++ G  I
Sbjct: 224 IDERLPVSLIGDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSDGLRIIVRDTGIGI 283

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             D    +F+ F            G GLGLSI +  +++ GG +++ S     +T    +
Sbjct: 284 APDAQARIFHEFEQADAGIARNFGGTGLGLSISDRIVSVMGGRIALESKPGEGSTFTITL 343

Query: 789 PS 790
           P 
Sbjct: 344 PL 345


>gi|123473622|ref|XP_001319998.1| ATPase [Trichomonas vaginalis G3]
 gi|121902794|gb|EAY07775.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 1406

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 169/386 (43%), Gaps = 42/386 (10%)

Query: 444  SEGV-AVFGPDGRIKLSNPAFRSLWKTEENRLSPG--------------THIRNIAATCS 488
             +G+     P  R++  N A     K  +  L  G                IR+I    S
Sbjct: 763  DDGIYCTLSPMQRLRELNTALNETQKLHDILLLGGKVVLWRFSDDRNPLPPIRSITPRHS 822

Query: 489  RYYN----------ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
            +               D  + FA  +    DE   ++  L ++SD V  +  +       
Sbjct: 823  KILRMNWSTVDEQVHEDYKEQFAKKLRQAIDESGWIESDLPIISDGVETWVSVRGQGDCF 882

Query: 537  --QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              + +   +++TD+  A   L EK +A  +A+  K  F+ ++S+E+R+P+  I G  D+L
Sbjct: 883  ARRIIGVLIDITDNRNAFMELEEKGQAAEQANREKTQFLANMSHEIRTPMNGIFGMLDVL 942

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                   L  +Q   V+ I +SS  L+ L++D L+L+ ++ G ++   +T+ L  ++   
Sbjct: 943  A---YQELTQEQRLLVDSIRSSSFQLMRLLDDTLNLSKIEQGELESTPTTVNLLKIIEPT 999

Query: 655  KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              + +++   + I   +I      +   AD Q ++QI + +LSNA+ F+ KG  V LK  
Sbjct: 1000 MIANSSRARMSKISFSIIVSKNFPTLVYADSQLIMQIINNLLSNALKFTKKGG-VTLKMK 1058

Query: 714  ------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
                   DN   + SV + G  I E+  K +F RF+       R   G GLGL +V+   
Sbjct: 1059 WDSTPTSDNEYLVVSVSDTGIGISEEQKKVIFERFMQAETSTSRYYGGTGLGLPLVQEIA 1118

Query: 766  NLHGGHVSISSSDEGVTTINCRIPSK 791
               GG+V + S+    +T   RIP +
Sbjct: 1119 RFLGGNVDVQSTPGEGSTFIVRIPMQ 1144


>gi|319793726|ref|YP_004155366.1| signal transduction histidine kinase with cheb and cher activity
            [Variovorax paradoxus EPS]
 gi|315596189|gb|ADU37255.1| signal transduction histidine kinase with CheB and CheR activity
            [Variovorax paradoxus EPS]
          Length = 1556

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 116/654 (17%), Positives = 244/654 (37%), Gaps = 63/654 (9%)

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQ 234
            E   K   L +  S    L D+        D+   ++    S         ++T   +  
Sbjct: 772  ELKNKVDDLGHANSDIVNLMDATAIATVFLDRNLRVMRFTPSAATIFKLIASDTGRPLSD 831

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
               G       ++ +  + S    E+   +          + Y+ +  + +       +D
Sbjct: 832  LVTGLDYPELSDDARAVLRSLQPSEREVGDARGNWYLARARPYRTIEDVIAGVVLSF-VD 890

Query: 295  VSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            +++     + L  + E    I++  +V +A    +  + F N  +  L       L    
Sbjct: 891  ITERKVAQESLRQSQERFSAIVNQASVGVAQMRLDGEITFANTCYRALTGYGDDELLGR- 949

Query: 351  SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--TLHVIVTSNP 408
                +L+F+  A+    Q  ++                ++     NG+   LH  VT   
Sbjct: 950  ---RVLDFVHPADLPATQSLFEQLAAQG-----KPFQAENRIVRKNGEVMWLHKSVTVLT 1001

Query: 409  RGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPA 462
             GG      + +  +++ +   E       +     +++  E  +     + R+   N  
Sbjct: 1002 DGGGRPDSALIVCTDVSERKLAEEALRESQERMRLMLENAIEYAIFSVDMERRVTSWNAG 1061

Query: 463  FRSLWKTEENRL--------------SPGTHIRNIA-------ATCSRYYNESDGWDLFA 501
               L    E  +              + G  +           A   R +   DG   +A
Sbjct: 1062 AERLLGYSEQEILGRSADLIFTEEDRAAGAPVEEARTALAEGRAADDRLHQRKDGSRFWA 1121

Query: 502  --AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              A++   D E +S+ G +++L D   +        A       +  + + A RA     
Sbjct: 1122 SGALMPMHDGEGRSI-GLVKVLRDQSKQ-------RAAQQELEQSRGELLSALRANEAAR 1173

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             AL  AD  K+ F+  +S+ELR+PL +I G  +LL    L + +  Q++    I   +++
Sbjct: 1174 RALETADAAKDRFLAVLSHELRNPLASISGAAELLAPESLATQD--QARAARVIRRQASV 1231

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            +  ++ ++LD++++  G + L+   I    + +   +++   +      + +    +  +
Sbjct: 1232 MKVMLGELLDVSSLRQGRLALSRERISAQAIADAALETVRPLIEHGRHTLDLDIAEEEIA 1291

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              AD  RL Q+ S +LSNA  ++     + L    +  D +F V ++G  +  +  +++F
Sbjct: 1292 LDADPIRLSQVLSNLLSNAAKYTPAPGRIALSVRAEARDAVFEVTDDGIGMEPESIETMF 1351

Query: 740  NRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
              FV +  AH     G+G+GL++V + + LHGG V+  S           RIP+
Sbjct: 1352 EMFVQSEHAHARANGGLGIGLALVRNIVELHGGTVTGHSEGLGRGCRFTVRIPT 1405



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 87/285 (30%), Gaps = 26/285 (9%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVFQ 234
            ++ E  +  + L      F  + +     V      G+I +AN  Y+  T    + ++ +
Sbjct: 890  DITERKVAQESLRQSQERFSAIVNQASVGVAQMRLDGEITFANTCYRALTGYGDDELLGR 949

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-EHGNNKSYK--IVRVLNSFGEAGI 291
            + +           +      +A  K F      + ++G        +  + +  G    
Sbjct: 950  RVLDFVHPADLPATQSLFEQLAAQGKPFQAENRIVRKNGEVMWLHKSVTVLTDGGGRPDS 1009

Query: 292  AI----DVSKEITVNDQLTHTYE----ILHNLTV-AIAIFDQNRYLQFHNRSFVELWEID 342
            A+    DVS+     + L  + E    +L N    AI   D  R +   N     L    
Sbjct: 1010 ALIVCTDVSERKLAEEALRESQERMRLMLENAIEYAIFSVDMERRVTSWNAGAERLLGYS 1069

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
               +    ++    E  R+A    E        E   ++ +            +G     
Sbjct: 1070 EQEILGRSADLIFTEEDRAAGAPVE--------EARTALAEGRAADDRLHQRKDGSRFWA 1121

Query: 403  IVTSNP----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                 P     G +I + + L  Q         L + +GE +  L
Sbjct: 1122 SGALMPMHDGEGRSIGLVKVLRDQSKQRAAQQELEQSRGELLSAL 1166


>gi|255533794|ref|YP_003094166.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346778|gb|ACU06104.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 1337

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 136/622 (21%), Positives = 241/622 (38%), Gaps = 59/622 (9%)

Query: 210  DQAGDILWANISYKKNTETEGIVFQKAIGE-----SRKLFKEEIKKRMISSSALEKNFCE 264
            D    I   N +             ++I         +   E+I+  +++   LEK    
Sbjct: 732  DGNLYIRKFNPAAVSMVNLIDADIGRSIDHISNNIKAENLSEDIRSVLLTGRTLEKEVQ- 790

Query: 265  TVSTLEHGNNKSYKIVRVLN----SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA 320
                L++GN    +I+  L     + G     +DVS    +N+ ++  +    +L  A+ 
Sbjct: 791  ----LKNGNRSLMRILPYLRKDRKTDGVVITFVDVSHITELNNIISGVFN--ASL-NAVM 843

Query: 321  IFDQNRYLQFHNRSF--VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
             F   R  ++    F  V   ++ LAFL      DEL   +     LPE      +    
Sbjct: 844  AFTAVRNQEYFIVDFKCVAFNDVALAFLGKKK--DELYNAMLVKQ-LPELAEGNLF-GRY 899

Query: 379  FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK----YNTLVK 434
             SV +   + +  + L N +   ++      G       ++T +   + +    YN L+ 
Sbjct: 900  TSVVEKGSSLQTEFQLMNKRWFQLVAVKMSDG-FAATLTDITDRKRADQRLKKNYNELIA 958

Query: 435  VQG--ETID-HLSEGV----------------AVFGPDGRI----KLSNPAFRSLWKTEE 471
            V+   + ++  L E V                     +  I     ++N  +RS      
Sbjct: 959  VRENLKLLNVELEEKVRQRTKELTASENRFNEVAKATNDTIWDWSLVNNNMWRSENLNVM 1018

Query: 472  NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
               S      NI     + + E D   +  ++  + ++  K       +L  +  EY+II
Sbjct: 1019 FGYSNSDENSNIGFWFDKIHPE-DRKRVQDSVYEAINNNEKQWSAEYRVL-KANGEYAII 1076

Query: 532  PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                +     F      V +   +T+ NE  ++  E K+ F+   S+EL++P+T+I GF 
Sbjct: 1077 FDRGSILHDDFNTPYRMVGSMVDITKTNELQKELMEKKDEFMSIASHELKTPITSIKGFL 1136

Query: 592  DLLKTSKL-GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L K +   G+ +     Y++  +     L  LVND+LD++ + AG M+ NYS   +  L
Sbjct: 1137 QLTKRAAAKGTADRDMLIYIDKANRQLENLTFLVNDLLDVSKIQAGKMQFNYSEFNIRKL 1196

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            + E    +        I +K   D       AD+ R+ Q+    LSNA+ +S     VI+
Sbjct: 1197 IAECVDDMQNT-EGYEISLKHTDDID---IYADQHRIEQVIKNFLSNAIKYSPDNKVVIV 1252

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHG 769
                   +    V++ G  I  D  K VF+RF    H   Q  G+GLGL I    +  HG
Sbjct: 1253 YTKLMGKEIRVCVQDFGIGIAPDKAKLVFDRFFRVDHVNYQFSGLGLGLYICAEIVTRHG 1312

Query: 770  GHVSISSSDEGVTTINCRIPSK 791
            G + + S +   +    +IP K
Sbjct: 1313 GTIGVQSEEGKGSEFWFQIPLK 1334


>gi|189467846|ref|ZP_03016631.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
 gi|189436110|gb|EDV05095.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
          Length = 507

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 160/398 (40%), Gaps = 17/398 (4%)

Query: 396 NGQTLHVIVTS--NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           +G+ L+V V      R   I    N+T       +           +++L     V   +
Sbjct: 115 SGKELYVSVRMVYLNRERVIAFARNITESETQRQENEKYRYFLESILENLPIATTVKDKN 174

Query: 454 --GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             G   + N     +      ++               +  E+D   +   +  S+    
Sbjct: 175 KKGLYLIWNKKASEMIGIPAEKIVGHHESEFNHLMPDNFIRETDKQVIETGLPQSYIKHF 234

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            + +G    LS      +++     Q      +  D       L E  E   +++++K++
Sbjct: 235 SNSKGQKYTLS---FHKTLVSYNKGQERWIVSSALDIT----ELLEAKEKAEESNKLKSA 287

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PL  I+GF+ +L             +YV  I  ++ +LL L+NDILD++
Sbjct: 288 FLANMSHEIRTPLNAIVGFSSILSEYIQ---EEDAKEYVHIIEENNQLLLQLINDILDIS 344

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AGI++     + +N  L E+K     K+    I I ++   +         R+ Q+ 
Sbjct: 345 RIEAGILEFIEENMDVNASLYEIKAIAELKVSPK-IEIHLLPGLETCVIHTVPHRVKQVI 403

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           +  +SNA+  +  G   I       G   F V++ G+ IP +  K +F RFV       +
Sbjct: 404 NNYVSNAIKHTEAGHIDIGYYTPQEGYIRFFVRDTGTGIPTENQKHIFERFVKLDSF--K 461

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +G GLGLSI         G + ++S+    +     IP
Sbjct: 462 QGTGLGLSICTIIAEKMNGKLGVNSTLGKGSEFWFEIP 499



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 27/195 (13%)

Query: 269 LEHGNNKSYKIVRV-LNSFGEAGIAIDVSKEITVNDQLTHTY----EILHNLTVAIAIFD 323
           +E G      +  V LN       A ++++  T   +          IL NL +A  + D
Sbjct: 113 VESGKELYVSVRMVYLNRERVIAFARNITESETQRQENEKYRYFLESILENLPIATTVKD 172

Query: 324 QNRYLQF--HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           +N+   +   N+   E+  I    +  +    E        + +P+    +T K+    V
Sbjct: 173 KNKKGLYLIWNKKASEMIGIPAEKIVGHH-ESEF------NHLMPDNFIRETDKQ----V 221

Query: 382 YKSSETHKDTWHLPNGQ------TLHVIVTSNPRGGTIWMFE---NLTVQVDLETKYNTL 432
            ++        H  N +      + H  + S  +G   W+     ++T  ++ + K    
Sbjct: 222 IETGLPQSYIKHFSNSKGQKYTLSFHKTLVSYNKGQERWIVSSALDITELLEAKEKAEES 281

Query: 433 VKVQGETIDHLSEGV 447
            K++   + ++S  +
Sbjct: 282 NKLKSAFLANMSHEI 296


>gi|172056681|ref|YP_001813141.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989202|gb|ACB60124.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 464

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 122/282 (43%), Gaps = 5/282 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R+ +   +  L D     ++    +    +   +  +       L +  E+L + DE + 
Sbjct: 177 RQIIDTIIRPLIDMKRASTVYAQGDFAYRIPIQSDDEIGELAETLNKMAESLGEVDEQRK 236

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+T++++   L      Q  Y + I   +  L  LVND+LDL
Sbjct: 237 EFLANVSHELRTPLSYIRGYTEMMQDKALDEKTRDQ--YYQIIERETERLQRLVNDLLDL 294

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     +    +V + +L +V   +        + I    D      + D  RL Q+
Sbjct: 295 AQLERDSYPMTKQPLVFSQVLEDVVYRMEPIAKAKGVSIITDFDPS-QIVLGDNDRLEQV 353

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +L NA+ ++     + L    D    I S+++ G  IP +  + +  RF        
Sbjct: 354 IGNLLDNALRYTPASKHIYLSTKTDGEQTICSIRDEGEGIPPEHLERLTKRFYRVDKSRT 413

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           R   G GLGL+I +  I+ H G +S  S     TT+   +P 
Sbjct: 414 RKDGGTGLGLAITKHIIDRHDGTISFESVLGQGTTVLITLPL 455


>gi|254506101|ref|ZP_05118245.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
 gi|219550919|gb|EED27900.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
          Length = 771

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 119/240 (49%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + + + K++F+  +S+E+R+P+  ++G   +L  +    L  +Q ++++ + 
Sbjct: 300 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKT---DLTEEQRKHLKTLY 356

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G ++L +    L  ++  +     T   E  ++ KVIS+
Sbjct: 357 ESGDHMMTLLNEILDFSKIEQGHLELEHQPFPLESIIGSINSVYFTLCSEKGLQFKVISE 416

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIFSVKNNGSSI 730
              G +  +D+ RL QI   +L+NA+ F+S+G   V     R NG       V++ G  I
Sbjct: 417 VPQGRWYRSDKARLRQILFNLLTNAVKFTSRGYVEVYFTEKRANGVDYLHIRVRDTGIGI 476

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  + +F  F        RR  G GLGL+IV+    L  G + ++S     +    ++
Sbjct: 477 AKESQEKIFKPFEQAESSTTRRFGGTGLGLAIVKQLCELMDGDIHLTSEVGIGSCFEVQL 536


>gi|301061389|ref|ZP_07202161.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444513|gb|EFK08506.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 595

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 155/383 (40%), Gaps = 32/383 (8%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           M ++L  Q++   +              + EGV     + R+   N    ++        
Sbjct: 235 MADDLRRQIE---QVRRQRNEMQAAFSSMVEGVIAIDMEARVLNMNQRAATILGC----- 286

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                  + A    R   E      F   +      R ++   + +  + +L      L 
Sbjct: 287 -------DPAEARGRGIQEVMRNTAFYNFVEETLAARDTIVRDIPMGDEGLLNGHGTILR 339

Query: 535 N-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           + A+  +  + V D V   R L          + I+  FV +VS+E+++P+T I GF + 
Sbjct: 340 DEAENQIGALFVLDDVTRLRKL----------ENIRRDFVSNVSHEIKTPITAIKGFVET 389

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD--AGIMKLNYSTIVLNDLL 651
           L+   + +  +   +++  I      L  ++ D+L+L+ ++  +G   L+     + D++
Sbjct: 390 LRDGSVKN-PADAERFLGIIEKHVDRLEAIIEDLLNLSKIEQTSGKEGLSLVESQMVDII 448

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +   Q     + E  I I V     + +   D   L Q    +L NA+ +S  G T+ + 
Sbjct: 449 HNALQICHVAIAEREIEIDVSCAESV-TLKVDPTLLEQALVNLLDNAVKYSDTGGTIHIS 507

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
              ++G    +V+++G  I +     +F RF        R   G GLGL+IV+  +  HG
Sbjct: 508 VTEESGSITIAVRDHGVGINKKHLPRLFERFYRVDKARSRQLGGTGLGLAIVKHVVQAHG 567

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           GH+++ S+    +T +  +P  +
Sbjct: 568 GHITVESTPGEGSTFSIHLPKNQ 590



 Score = 37.6 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 16/195 (8%)

Query: 291 IAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A D+ ++   V  Q         ++   +   D    +   N+    +   D A  A  
Sbjct: 235 MADDLRRQIEQVRRQRNEMQAAFSSMVEGVIAIDMEARVLNMNQRAATILGCDPAE-ARG 293

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               E++      N + E L  +       ++ +      +     +G  L     +  +
Sbjct: 294 RGIQEVMRNTAFYNFVEETLAARD------TIVRDIPMGDEGLLNGHGTILRDEAEN--Q 345

Query: 410 GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSE--GVAVFGPDGRIKLSNPA-FRS 465
            G +++ +++T    LE  + + +  V  E    ++   G      DG +K  NPA    
Sbjct: 346 IGALFVLDDVTRLRKLENIRRDFVSNVSHEIKTPITAIKGFVETLRDGSVK--NPADAER 403

Query: 466 LWKTEENRLSPGTHI 480
                E  +     I
Sbjct: 404 FLGIIEKHVDRLEAI 418


>gi|229591212|ref|YP_002873331.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
 gi|229363078|emb|CAY50066.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
          Length = 917

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 + V D  RL QI + ++SNA+ F+ +G+ V      D  +       SV++ G 
Sbjct: 387 YRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|66045179|ref|YP_235020.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255886|gb|AAY36982.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 779

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 148/369 (40%), Gaps = 6/369 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     I+ + + G+     +G I   N     +    E  +        
Sbjct: 259 ERERALRDNEERLRLIIEGVKDYGIFALDRNGFITTWNAGAERIKGYTEQEIIGQHFSVF 318

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + +    +       + +  R+   G+    S  +                 
Sbjct: 319 YLQQECPQHPDMALHEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKIT 378

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S 
Sbjct: 379 RDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS- 437

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q   + +I  +   LL L+N++LD+A ++AG + L    + L+++L E    ++   
Sbjct: 438 ---QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMA 494

Query: 663 HENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + NI +K + S       VADRQRL+Q+   +LSNA+ ++     V ++  +       
Sbjct: 495 ADANIELKPLPSLPDDIGVVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIAEQVTI 554

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++ +  
Sbjct: 555 SVVDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEG 614

Query: 782 TTINCRIPS 790
                 +P 
Sbjct: 615 CRFILALPL 623


>gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1051

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 122/575 (21%), Positives = 228/575 (39%), Gaps = 54/575 (9%)

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI-AIDVSKEITVND 303
              I  +   ++ L +   ET   +   N++   ++        +   AID+ +++ + +
Sbjct: 67  NPSIPNKAEKTAQLIQELKETTPRVFGDNSEVLPLLASFEEASLSMFTAIDIEEKLDIAE 126

Query: 304 -QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            +     +IL NL            + F N S+          L++    + L+ +    
Sbjct: 127 WRADTFEQILLNL----------DKVYFSNVSYE-----TDRHLSSLMQLEWLMFWSTEE 171

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHK--DTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
            +L E L +   K   +      E         L   + + +    N     I  F N  
Sbjct: 172 RRLSEYLIYSANKRLHYDDAVRDEIQSLIQNQQLLVERFVALNANHNQVQLLIETFSNKV 231

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q   E +   L + + + +  L  G  +   + R+ L       +  T E+ L      
Sbjct: 232 FQTSQEFRDKLLNQEELQALSPLKTGAGLAALNTRLAL----LHDINDTMEHELQTKL-A 286

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDE--RK---SLQGTLELLS------DSVLEYS 529
           + I AT  +         L   ++ S      RK   +L   LE LS      DS L   
Sbjct: 287 QTIKATTQQRLVFIVLMSLVTILVISLTIRLVRKVTNNLHLVLEFLSRENYSEDSPLSEL 346

Query: 530 IIPLPN--AQTMLTFVNVTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYEL 580
           I                  +  +A++ LT+  E          +A + K+SF+ ++S+E+
Sbjct: 347 IKGKDELSKFAQEVEKLSHEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSHEI 406

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  +IG +++L  +    L + Q  YV+ I  SS +LL+L+ND+LD + +++G++ +
Sbjct: 407 RTPLNGVIGISEVLADT---PLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLI 463

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +  +  + + + ++   ++ K  E  I + V IS       V D  RL Q+    +SNA+
Sbjct: 464 SPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAV 523

Query: 700 DFSSKGST----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
            F+ +GS       L++        FSV+++G  I E   K +F  F        R   G
Sbjct: 524 KFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGG 583

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL+I    + L GG + + S     +    ++
Sbjct: 584 TGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|117926486|ref|YP_867103.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610242|gb|ABK45697.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 910

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 163/387 (42%), Gaps = 18/387 (4%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E +  +   E +     ++  + ++   +G  V    G +  SN  F  +W+  E+ +
Sbjct: 385 LLEEIEQRRTAEEELREHQELLHDILETSVDGFLVVDRKGNVTHSNQRFAQMWQIPESII 444

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +     +    S      A +   ++D++ SL   L      V E    PL 
Sbjct: 445 MQQDESLLLQHVLPQL---SHPHSFMAKVNGLYEDDQFSLD-ELMFRDGRVFERHSRPLY 500

Query: 535 NAQTM----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   M      F ++T     +R L    +    A+  K++F+  +S+E+R+PL  IIG 
Sbjct: 501 HNGDMVGRLWQFRDITREREQQRQLQTAKDRAESANAAKSAFLATMSHEIRTPLNGIIGM 560

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + L+      L +   +  + I  SS +LL+L+N+ILD + ++A  ++          L
Sbjct: 561 LEHLRQE---PLEAALKERFDLICRSSEVLLDLLNNILDFSKIEADQLRFESIPYRPKQL 617

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + +  +      HE  I +       L  S + D  R+ QI   ++SNA+ F+  G  V 
Sbjct: 618 IQDGIELHKLLAHEKGIDLSCHCHPNLPSSSMGDPTRIRQILINLVSNAIKFTETG-YVQ 676

Query: 710 LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           ++A  + G       +V ++GS IPE     +F  F        RR  G GLGL+I +  
Sbjct: 677 IEAYLEEGAPAQLHINVSDSGSGIPEAQLAQLFTPFTQADGSISRRHGGTGLGLAISKRL 736

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           +    G +S++S     ++    IP +
Sbjct: 737 VEAMYGQISVTSQVGEGSSFLMTIPHQ 763



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  + +     ++IL        + D+   +   N+ F ++W+I  + +         
Sbjct: 394 TAEEELREHQELLHDILETSVDGFLVVDRKGNVTHSNQRFAQMWQIPESIIMQQD----- 448

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRGG 411
            E L   + LP+  +  ++   +  +Y+  +   D     +G+                G
Sbjct: 449 -ESLLLQHVLPQLSHPHSFMAKVNGLYEDDQFSLDELMFRDGRVFERHSRPLYHNGDMVG 507

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGET 439
            +W F ++T + + + +  T        
Sbjct: 508 RLWQFRDITREREQQRQLQTAKDRAESA 535


>gi|326796477|ref|YP_004314297.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326547241|gb|ADZ92461.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 854

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 131/284 (46%), Gaps = 11/284 (3%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           ER+   G   ++ +               + +     ++     +     +   KA  +K
Sbjct: 324 ERRIHAGEKRIIEER-------DRSEGLRLQSETLRVEAEEHRESAERARDDAEKASAVK 376

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+ELR+PL  IIG ++++    +   +    + +E +  SS  LLNL+N+ILD
Sbjct: 377 SEFLAKMSHELRTPLNAIIGLSEMMHEDAVEFGDEDYIEPLERVVRSSKHLLNLINEILD 436

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ ++AG M+L+ + +  + +L EV Q++        +  +  S   +G  V D  R+ Q
Sbjct: 437 ISKIEAGKMELSEAELDFDAVLEEVFQTVEPIAKGKPLSFEYES-ASVGVIVGDALRIKQ 495

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           IF  +LSNA+ F+  G  V LK    +      V + G  +  +  +++F  FV      
Sbjct: 496 IFFNLLSNAVKFTESG-KVKLKVVEQSDQLQVDVIDTGLGMSIEQTETLFQDFVQVDSSV 554

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +  G GLGL+I   F  +  G +++ S     +  + R+P K
Sbjct: 555 NRKFEGTGLGLAISRRFARMMNGDITVQSEVGKGSVFSVRLPVK 598


>gi|262381390|ref|ZP_06074528.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296567|gb|EEY84497.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 563

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 207/532 (38%), Gaps = 42/532 (7%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEI 341
           N         +VS   T  +       IL  L + + + D +      + N    E+  I
Sbjct: 51  NEELVIVYTRNVSSLKTEKNLQELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGI 110

Query: 342 DLAFLATNPSND----------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           +   +  +   +          E LE   +  K      +K   ++    Y+  E  K  
Sbjct: 111 ETREIEGHDDFEVNYNALMTAEERLETDMNVIKTGLTARFKGKVKSASGDYRDIEVAKYP 170

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT--LVKVQGETIDHLSEGVAV 449
             L NG+ L            + ++ ++T ++  E       ++      I  +      
Sbjct: 171 ISLNNGKPL-----------VLALWRDITSELATENTLRRTRILTKMALRISDIRTCSIF 219

Query: 450 FGPDGR------IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
             PD        +   N    +    +   +S G  I         +Y+          I
Sbjct: 220 IDPDSTHNFKDSVVTLND--WNTISEDMIEVSWGQFISRAHPDDQEHYHNMFTRLCRGEI 277

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERALTEKNE 560
             +  + R    G  E +   V           +    +    N+ +    E +L E   
Sbjct: 278 SEARIEARMLFPGKKEYVWREVFATVYERDEKGRPSVILGCSTNIQERKNQELSLEEAKV 337

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               AD++K+ ++  +S+E+R+PL  I GF++L+        + ++  Y + I  ++ +L
Sbjct: 338 KAEAADKMKSKYLADMSHEIRTPLNAITGFSELMA---FADTDEERMSYYDVIKMNNQLL 394

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + L+NDILD++ ++A  +K+ Y  + +++L++ +  S   ++    +++ +        F
Sbjct: 395 MQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVP-GGVKLVLEKGADHHMF 453

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RLLQ+ + +++NA+  + +GS  +    + +    F V++ G  I +D  K VF 
Sbjct: 454 GTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDNQLRFYVRDTGIGIDKDKLKDVFG 513

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RFV         G+GLGL+I +  +   GG + ++S     +  +  +PS E
Sbjct: 514 RFVKINDY--MEGIGLGLAICKGLVVKMGGLIHVTSELGVGSEFSFILPSHE 563


>gi|261342654|ref|ZP_05970512.1| sensor histidine kinase/response regulator [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315302|gb|EFC54240.1| sensor histidine kinase/response regulator [Enterobacter
           cancerogenus ATCC 35316]
          Length = 778

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 151/380 (39%), Gaps = 23/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K   + ++Q           +D   + V     D      N A   L    E 
Sbjct: 134 EQLKIEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 193

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 194 QLVNLKPQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 248

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 249 YYDRVGKRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  +    L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 307 ILLDT---DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLA 363

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +   +     L    V D  RL QI   ++SNA+ F+  G  V ++
Sbjct: 364 DLENLSGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTPHGGRVAVR 423

Query: 712 AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              + GD   F V+++G  IP++    +F  +         +   G G+GL++ +     
Sbjct: 424 IRNEEGDMLRFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSKRLAKS 483

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG +++SS     +T    
Sbjct: 484 MGGDITVSSQPGKGSTFTLT 503



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  +L+ +  E+ E  +   +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQTTLEQLKIEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q    + + ++ EE   +++ +   EK F   VS           G    ++I
Sbjct: 189 GKS--EKQLVNLKPQDVYSEEAAAKVMETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|254428730|ref|ZP_05042437.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
           sp. DG881]
 gi|196194899|gb|EDX89858.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
           sp. DG881]
          Length = 927

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 12/289 (4%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIK 569
           R SL   L  +    LE  ++ L  A+ +       +DSVR       +       +  K
Sbjct: 370 RNSLTENLVQI-GVFLEVVLLSLALARRINRLKEAHSDSVRDRAIAEMEAFKAGARNHAK 428

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+E+R+P+  I+G TDLL+ +   S+  +Q+QYV  I  S+  LL ++NDILD
Sbjct: 429 SEFLATMSHEIRTPMNGIMGMTDLLRRT---SMTHQQAQYVGTIYQSTQSLLTVINDILD 485

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLL 688
            + +++G ++L+Y  I L +++++  +  A +  E ++ + +  D ++      D  RL 
Sbjct: 486 YSKIESGKLELDYQPIALENIVDDCVRLFALRSSEKSLPLYIHIDSRVPERIKTDPIRLK 545

Query: 689 QIFSKILSNAMDFSSKGST---VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF 742
           QI + +LSNA  F+ +G     V LK   +N      +  V + G  + E    S+F  F
Sbjct: 546 QIITNLLSNAFKFTDRGHVALHVNLKQPVNNKGMCVLMIEVVDTGIGLDEGQQSSLFQAF 605

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              + +G+  G GLGL I +  I L GG + +SSS     T    +P +
Sbjct: 606 SDLSAKGKHNGAGLGLVICKRLIELLGGDIGVSSSLGRGATFWLSLPVE 654


>gi|196039037|ref|ZP_03106344.1| sensor histidine kinase ResE [Bacillus cereus NVH0597-99]
 gi|196030182|gb|EDX68782.1| sensor histidine kinase ResE [Bacillus cereus NVH0597-99]
          Length = 591

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + +  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEVELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
             IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|114570677|ref|YP_757357.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341139|gb|ABI66419.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 815

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 160/379 (42%), Gaps = 23/379 (6%)

Query: 424 DLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           + E+ Y  L + +      +   S+G   +  +  +   +P  R+L    E       HI
Sbjct: 282 ERESAYEALERNRERVALAVRGSSDGFWDWDLERNVLYHSPRLRALLGHPEE----AAHI 337

Query: 481 RNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            +       + ++ D  +   AA I +  D    L+               I   N    
Sbjct: 338 VDAEYADDIHPDDRDRSERALAAHIKTGADYDLQLRFRCANGEYRWFRTRGIAQRNDGRA 397

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +        +     L E  +    A+  K+ F+ ++S+E+R+P+  I+G   +L     
Sbjct: 398 VRMAGSITDIT---DLIEARDRANAANRAKSDFLANMSHEIRTPMNGILGMARVLADK-- 452

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L    +  ++ I  S   L++L++DILDL+ ++AG ++L+ +   L  + + V+    
Sbjct: 453 -DLPDDVNSKLDVIVRSGDTLMHLLDDILDLSKIEAGQIELDEAPFDLEIIGSRVEALYR 511

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---- 714
               +  + ++V ++D    S   D  RL QI + +++NA+ F++ G  V +        
Sbjct: 512 DTADKKGLTLEVEVTDRDGVSRHGDPLRLSQIANNLVANAIKFTASG-KVRMTLGPTADG 570

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            D+      V + G  + E  C+S+F +FV       RR  G GLGL+I +   +  GG 
Sbjct: 571 PDSDMIELVVSDTGIGMSEAQCQSIFEKFVQADSSTTRRFGGTGLGLAICKGLADQMGGT 630

Query: 772 VSISSSDEGVTTINCRIPS 790
           + ++S+    TT   R+P 
Sbjct: 631 IDVASNPGQGTTFTVRLPL 649



 Score = 38.8 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/158 (8%), Positives = 43/158 (27%), Gaps = 13/158 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S    +          +   +     +D  R + +H+     L        A +  + E 
Sbjct: 285 SAYEALERNRERVALAVRGSSDGFWDWDLERNVLYHSPRLRALLGHPEE--AAHIVDAEY 342

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----- 410
            + +      P+  +             +    +  +   NG+          +      
Sbjct: 343 ADDIH-----PDDRDRSERALAAHIKTGADYDLQLRFRCANGEYRWFRTRGIAQRNDGRA 397

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
                   ++T  ++   + N   + + + + ++S  +
Sbjct: 398 VRMAGSITDITDLIEARDRANAANRAKSDFLANMSHEI 435


>gi|37521628|ref|NP_925005.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212626|dbj|BAC90000.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 682

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 135/293 (46%), Gaps = 8/293 (2%)

Query: 502 AIITSFDDERKSLQGT-LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
            +I +       L+   +ELL    L+     L   +T            A  A     +
Sbjct: 297 GVIEALQRSVHQLEAEKMELLQGRTLQLE--RLVEERTAQVQEQARREQLARAAAESARQ 354

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              +A+ IK+ F+  +S+ELR+PL  IIGFT LL+  +L   ++  ++ +E I  ++   
Sbjct: 355 EAEEANRIKDEFLATLSHELRTPLNPIIGFTQLLRKGQLDEASA--ARALETIERNARAQ 412

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             ++ D+LDL+ +  G ++L    + L  ++ +   ++       NI ++   D  +   
Sbjct: 413 SRIIEDMLDLSRIITGKLRLEVRPVALATVVEDALDTVRFAAQSKNIELRARLDPNVVLP 472

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  RL Q+   +LSNA+ F+ +  ++ ++  R   + + +V+++G  I  D    VF 
Sbjct: 473 FGDSNRLRQVVWNLLSNAIKFTPENGSIEVQLERGRAEAVLTVRDSGVGIAGDFLPHVFE 532

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
           RF        R   G+GLGL+IV   + LHGG V + S   +   T   R+P 
Sbjct: 533 RFRQANSTTTRSHGGLGLGLAIVRQLVELHGGTVGVESPGSDQGATFTVRLPL 585


>gi|331016785|gb|EGH96841.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 917

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 120/242 (49%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL +I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNSILGFTHLLQKSE---LTPRQFDYLATI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H  ++ +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|330828900|ref|YP_004391852.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328804036|gb|AEB49235.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 698

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 150/391 (38%), Gaps = 35/391 (8%)

Query: 418 NLTVQVDLETK-------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           N+T +  L+ +            +         S+       + R+  +           
Sbjct: 179 NITYRARLQEQVAVKTEALQASERRFRSFAAMASDWFWETDAEHRLSYA----------S 228

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VL 526
           E         +    T   Y       D  A       D R+ ++G    ++       +
Sbjct: 229 EPGYLDEMTPQATRPTLYDYVCNKQSCD--AQKYLQLLDLRQPVRGVRMQVALQHGPCWM 286

Query: 527 EYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           E S  P  +   +      T  ++++ +R E  L    +    A+  K+ F+  +++E+R
Sbjct: 287 EVSAEPCFDHDGLFIGYRGTARDISNQIRREEELARARDEAEAANRAKSQFLAMMTHEIR 346

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           SP+  ++G  DL++ ++L     +Q   + + + S+ +L  +++D+LD + +++  +  +
Sbjct: 347 SPMNAVLGMLDLVQHAELA---PEQQSLLRHATHSARLLQTIIDDVLDFSKIESQTLVFH 403

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
             T+    L   + + +  +     I +    D  +      D  RL Q+   +L NA+ 
Sbjct: 404 CETLQPVQLCQSLVEPLQARATAKGIALVYRVDESVPRELQGDPMRLSQVMGNLLDNALK 463

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           F+ +G  V L     +   + SV + G  I +     +F  F    +   RR  G GLGL
Sbjct: 464 FTEQG-QVTLHLGWQDEKLLISVSDTGIGIADADQALLFEPFSQVDNSATRRFSGTGLGL 522

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I +  + L GG + + S     +     +P
Sbjct: 523 AISKRLVTLMGGEIHLKSEPGKGSCFWFELP 553


>gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1295

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 150/362 (41%), Gaps = 24/362 (6%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD--------GWDLFAAIIT 505
           G  +   P    L +     +    H   +    +R    +           +       
Sbjct: 447 GTHRAFAPREEELLRRVMENIGVALHTTEVRYELARLLETTQEQSEKLQVQQEELRQTNA 506

Query: 506 SFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
              ++ ++L  + E L     E  +       ++        +  +A + L EK  AL  
Sbjct: 507 ELQEQARALAASEERLQVQQEELRVSNEELEERSRSLAEKNRELQKARQELEEKARALEI 566

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +   K+ F+ ++S+ELR+PL +I+  + +L T+K G+L  +Q +Y   I+ S + LLNL+
Sbjct: 567 SGRYKSEFLANMSHELRTPLNSILILSQMLATNKQGNLLPRQLEYATTINNSGSDLLNLI 626

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
           N++LDL+ ++AG M +N  T+ L  LL+ +         E  + +       L  +  +D
Sbjct: 627 NEVLDLSKIEAGRMDINPETVNLKALLDSLLHPFRPLAEEKQLTLVGELADDLPVTIYSD 686

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIP 731
             RL QI   +LSNA+ F+++G   I     +N               +F V++ G  I 
Sbjct: 687 ETRLGQILKNLLSNALKFTAEGEVKITIGRPENDKLPPGLKLNPARTLVFQVRDTGIGIA 746

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D  + VF  F        R   G GLGLSI      L GG ++ +S     +     +P
Sbjct: 747 ADKLEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLGGELTAASRAGEGSVFTLWLP 806

Query: 790 SK 791
            +
Sbjct: 807 ER 808


>gi|192359662|ref|YP_001981685.1| response regulator receiver domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190685827|gb|ACE83505.1| Response regulator receiver domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 1061

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/391 (23%), Positives = 165/391 (42%), Gaps = 33/391 (8%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             +           ++H+   V +   DG + + NPAF +L    ++ L  G  +R +AA
Sbjct: 358 RRRLAKREGHFRSLLNHIPAPVYMCALDGTLTVVNPAFCALVNIVKSDLL-GQPLRAMAA 416

Query: 486 ---------TCSRYYNESDGWDLFAAIITSFDDERK----------SLQGTLELLSDSVL 526
                    T  R   +    D+   + T   +++              G  E L+  +L
Sbjct: 417 PRWLSPLLSTMERAIAKRGLSDVHLVLRTPTGEQKYFHVLHFPVVYEASGAYEALACFIL 476

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           + +   + N Q M       + +  ER   L +  E    A   K  F+ ++S+E+R+PL
Sbjct: 477 DETERLVAN-QHMENINQRLEQLVDERTVELIQAKEEALAASRAKADFLANMSHEIRTPL 535

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG   +    ++   N     Y++ + AS   LL ++NDIL+ + ++AG +KL+   
Sbjct: 536 NAIIGLAHVALAMEM---NPNLRNYLQKMRASGEHLLEVINDILNFSRLEAGKLKLDQVE 592

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSS 703
             L D++      ++ K     + ++V    ++      D  RL QI   + +NA+ F+ 
Sbjct: 593 FALVDVIQRAINLVSDKAEAKGLSLQVEIAPEISPWLKGDPLRLGQILINLCANAVKFTD 652

Query: 704 KGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           +G     V  KA R +  + I  V++ G  I   +  S+F  F    +   RR  G GLG
Sbjct: 653 QGCIQLLVQQKARRGDAINLIIDVRDTGIGIAPGLLASLFQPFHQVDNSNTRRFEGTGLG 712

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +S  +L   H+S+ S     +     I
Sbjct: 713 LAICKSLADLMDAHLSVESEMGKGSCFRLDI 743



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 44/143 (30%), Gaps = 10/143 (6%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--EGIVFQKAIGES 240
           +  ++L+     F+ L + +   V+     G +   N ++          ++ Q     +
Sbjct: 356 INRRRLAKREGHFRSLLNHIPAPVYMCALDGTLTVVNPAFCALVNIVKSDLLGQPLRAMA 415

Query: 241 RKLFKEEIKKRMISSSALEKNFCET-VSTLEHGNNKSYKIVRVLNS-------FGEAGIA 292
              +   +   M  + A         V     G  K + ++               A   
Sbjct: 416 APRWLSPLLSTMERAIAKRGLSDVHLVLRTPTGEQKYFHVLHFPVVYEASGAYEALACFI 475

Query: 293 IDVSKEITVNDQLTHTYEILHNL 315
           +D ++ +  N  + +  + L  L
Sbjct: 476 LDETERLVANQHMENINQRLEQL 498


>gi|60680057|ref|YP_210201.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491491|emb|CAH06243.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 411

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 136/258 (52%), Gaps = 6/258 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + Q +LT  ++T+    +R L  + E    A+++K++F+ ++S+E+R+PL  I+GF+ LL
Sbjct: 158 HEQMLLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLL 217

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            +      ++++  Y++ ++ ++  LL +V D+LDL+ +++G +  +YS   +NDLL  +
Sbjct: 218 AS---ADDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCAL 274

Query: 655 KQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +  ++ +   I++   +        +++ R++QI + ++ NAM F+  G        
Sbjct: 275 HGILNIRLKDKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRP 334

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +   +  F V + G  IP      +F+RF    H  +  G GLGL++ ++ +   GG + 
Sbjct: 335 QGEDEIYFYVSDTGIGIPAGEQDKIFDRFTKLDH--EVPGTGLGLTLSQTIVQNLGGEMG 392

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S     +T    +P K
Sbjct: 393 VESEVTKGSTFWFTLPLK 410


>gi|330985282|gb|EGH83385.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 1170

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + + S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLADQSQALAD--QRDALDRNNEELSIAQAELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPGENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEM 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +F V+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +  +  +P
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717


>gi|127512132|ref|YP_001093329.1| hybrid sensory histidine kinase BarA [Shewanella loihica PV-4]
 gi|126637427|gb|ABO23070.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 933

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 107/538 (19%), Positives = 200/538 (37%), Gaps = 68/538 (12%)

Query: 275 KSYKIVRVLNS-FGEAGIAIDVSKEITVNDQLTHTYEIL--------HNLTVAIAIFDQN 325
           + Y++   L    G     + +S EI +  +   T + L         NL   IAIFD N
Sbjct: 39  RFYELEESLIERGGNIIEPLAISAEIGLETKNFETTKRLITSVQLNKSNLVQFIAIFDTN 98

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDEL----LEFLRSANKLPEQLNWKTWKENIFSV 381
             +   +  +         F+  N   D L    +E    +  +   + + + +E + S 
Sbjct: 99  NRVIVTSHHYK-----SHEFMRYNEPIDSLQNTEVEQFGDSIIMRSPI-FSSQRELVVSP 152

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           Y S+   +              V S   G    +            K N L++     + 
Sbjct: 153 YDSNSMAQQ-------------VNSAKLGYIAVLLN----------KENALLEQHRAAVA 189

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
                + + G    +            T     +    I  +    ++         +  
Sbjct: 190 AFI--IVLIGVQLNLLF----------TFRLVKNVTHPITEMVRVVAKIREGKLDTRVDG 237

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +I   D  ++ +      LS+   E           +   +   +    E  L    + 
Sbjct: 238 NLIGELDLLKRGINAMAGSLSEYHEEMQQNIDQATSDLRETLEQIEIQNVE--LDLAKKR 295

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L++ Q  Y++ I  S+T L
Sbjct: 296 ALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHASQQDYIKTIEKSATNL 351

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GS 679
           L ++NDILD + ++AG M+L      L +++++    +A    E ++ + V  +  +  +
Sbjct: 352 LGIINDILDFSKLEAGKMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPSINDN 411

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIPEDMC 735
              D  R+ Q+ + ++ NA+ F+  GS      +     +  +    + + G  I +   
Sbjct: 412 VSGDALRVSQVITNLVGNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITDTGIGIDKPHQ 471

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +F  F        RR  G GLGL I +  IN  GG +   S+    +T    +P K
Sbjct: 472 AQLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWFTLPLK 529


>gi|29349762|ref|NP_813265.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341672|gb|AAO79459.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 631

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 130/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L+E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          +  +Y
Sbjct: 393 KAYTRLSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PDIEDRKEMREY 449

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILD++ ++AG      S I +N  + E++QS+  ++ +  + +
Sbjct: 450 ADIIETNTDLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTL 509

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ S  + NA+ F+  GS  +    +D     F V + G  
Sbjct: 510 TFTERLPECTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCG 569

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + E+ C+ VF RFV        +G GLGLSI +  I+  GG + + S +   +T    +P
Sbjct: 570 MSEEQCRHVFERFVKYNPF--VQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627

Query: 790 SKE 792
            ++
Sbjct: 628 YQQ 630


>gi|3953516|dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii]
          Length = 917

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L+ +Q  Y+  I
Sbjct: 270 ELDLTRKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 + V D  RL QI + ++SNA+ F+ +G+ V      D  +       SV++ G 
Sbjct: 387 YRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|331008579|gb|EGH88635.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 1170

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + + S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLADQSQALAD--QRDALDRNNEELSIAQAELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPGENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEM 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +F V+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +  +  +P
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717


>gi|257487872|ref|ZP_05641913.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 1170

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + + S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLADQSQALAD--QRDALDRNNEELSIAQAELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPGENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEM 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +F V+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +  +  +P
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717


>gi|297580266|ref|ZP_06942193.1| sensor protein tors [Vibrio cholerae RC385]
 gi|297535912|gb|EFH74746.1| sensor protein tors [Vibrio cholerae RC385]
          Length = 1020

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 125/261 (47%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 470 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 529

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++ +   L  L+ 
Sbjct: 530 LLQDT---TLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIDQAHFDLYRLVR 586

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 587 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRI 646

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 647 RLALDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVKAMG 706

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 707 GELQLASQLGQGSCFWFTLPL 727


>gi|223935287|ref|ZP_03627205.1| multi-sensor signal transduction histidine kinase [bacterium
            Ellin514]
 gi|223896171|gb|EEF62614.1| multi-sensor signal transduction histidine kinase [bacterium
            Ellin514]
          Length = 1057

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 135/807 (16%), Positives = 268/807 (33%), Gaps = 79/807 (9%)

Query: 38   IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV---WD---GKDE 91
            +I  +  + +R    + + ++ +    I  Q +           +T+V   W    G  E
Sbjct: 270  VIARVWPLVERARADQALRKSEARFRAIVSQATTGVVQADAEGQMTLVNRRWCEMLGYTE 329

Query: 92   TPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF--DLVAETQN 149
               +   + +  +       L +     +      + K  +  RK+G +F          
Sbjct: 330  AELLTMNIAEVTEGESLRATLSAVHRLAEGGPSFDMEKRYK--RKDGSTFWASSSVNAVR 387

Query: 150  DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
              A + +G V+     L I                  + +   + F+ LF+   +     
Sbjct: 388  GPAGEYQGLVA---VVLDISERKRAEERERRAATDALEAAKVNANFRTLFEQGTYFAGVM 444

Query: 210  DQAGDILWANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE 264
               G ++ AN            E  G  F      +R     E+ ++    +A    F +
Sbjct: 445  SLDGTVVEANRIALVACGFKKEEVIGKKFWDCGWWNRSPALMEMVRKASQQAAEGNIFRQ 504

Query: 265  TVST-LEHGNNKSYKIVRVL--NSFGEAGIAI----DVSK----EITVNDQLTHTYEILH 313
                 +  G+ +   +      +  G+    I    D+++    E  + +       +  
Sbjct: 505  ESPYFVADGSQRFVDLSIAPAKDDSGQVVFLIPTGTDITERKRAEEALRESEERYRTLFE 564

Query: 314  NLTVAI----AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
            ++         IFD  +             EI+ AF       D     +R     PE  
Sbjct: 565  SMDEGFCIIEVIFDAGQR-----PMDYRFLEINPAFEKQTGFKDAKGRRMRE--MAPEHE 617

Query: 370  NWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTS--NPRGGTIWM-FENLTVQVDL 425
              + W E   +V  + +  + ++     G+   V   S   P    + + F ++T +  +
Sbjct: 618  --QNWFETFGNVALTGQPARFESQATALGRWFEVHAFSVEMPERHRVGVVFSDITERRRV 675

Query: 426  ETKYNTLVKVQGETIDHLSEGVAVF---------GPDGRIKLSNPAFRSLWKTEENRLSP 476
                  + +      + + EG  V            D R   +NPAF      +      
Sbjct: 676  VEAVREVGERYQTLFNSIDEGFCVIEVHFDDRNRAQDYRFLETNPAFAKQTGIKAAEGRW 735

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLP 534
                R IA     ++ E  G    +     F++   +L    ++ +  + E     + + 
Sbjct: 736  M---REIAPEHEEHWYEIYGKVSSSGESVRFENRAGALNRWFDVFAFRIGEPEQRKVAIL 792

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS-----------FVQHVSYELRSP 583
                            A+ AL  +NE L +  + + +           F   +S+++RSP
Sbjct: 793  FTDISERKKAEIALKEAQMALARQNEFLDQTVQQRTAKLQETIMELEAFSYSISHDMRSP 852

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  + G+ + L      +L+ +   Y+E I  S+  L  LV D+L  + V  G M++   
Sbjct: 853  LRAMQGYAEALLQDYQSNLDDQAKHYLERIHRSAARLDLLVRDVLAYSKVAKGDMQMK-- 910

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            TI L  L+ ++ Q+    +H + I++           +     L QI S +L NA+ FS 
Sbjct: 911  TINLEHLIGDIVQNY-PNLHSSRIQVT---ASPFPPVIGHEGLLTQIVSNLLGNAVKFSY 966

Query: 704  KGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
             G    V + A     D      + G  I  +  + +F+ F       +  G G+GL+IV
Sbjct: 967  PGQLPEVAISAETMGPDVRIWFADKGIGIAPEHHEQIFHIFGRVYPDKKYEGTGIGLAIV 1026

Query: 762  ESFINLHGGHVSISSSDEGVTTINCRI 788
                   GG   + S     +     +
Sbjct: 1027 RKAAERMGGSAGVVSELGKGSQFWITL 1053



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 9/180 (5%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                +L ++  +  + D N  L + N +   +      F       +EL+         
Sbjct: 6   ESITRVLESIADSFLVVDGNWRLTYMNPAARRI------FTDQGLKVEELIGKHFWNEAF 59

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
           PE       +E   S+ +      D +     +   + V     GG    F ++T +   
Sbjct: 60  PETRGTLIEQEYRRSMTERVSGEFDYYLRAWQRWFAIRVYPVEAGGISIYFHDITKRKLT 119

Query: 426 ETK---YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           E +     +L K      +            GR   ++  +       ENR+  G +   
Sbjct: 120 EERATFLASLSKKLASVTEEEQIIRITVEAVGRHLNADRCYFVECLEHENRILIGHNWHR 179


>gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227]
          Length = 880

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 120/665 (18%), Positives = 237/665 (35%), Gaps = 87/665 (13%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV----WHRDQAGDILWANIS 221
           L+ ++ + + +E    + + ++    +  F+ LF   D       W R     + W    
Sbjct: 4   LKYIAENRLSAENGVLSPRGRETQADVPAFEPLFADSDCSAMSNTW-RGSLESLAWFMRY 62

Query: 222 YKKNTETEGIVFQKAIGESRKLFKE--EIKKRMISSSALEKNFCETVS-----TLEHGNN 274
           ++ N      + +  +  S  L      ++   +      K   E ++       +   +
Sbjct: 63  WRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVERDTALKALHERINKYRNAPQDDSGS 122

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH--------NLTVAIAIFDQNR 326
             Y I            A+           L    + +          L + + I D+N 
Sbjct: 123 NLYWISEGPRPGVGYFYALTPVYLANRLQALLGVEQTIRMENFFLPGTLPMGVTILDENG 182

Query: 327 YLQFHNRSFVELWE------IDLAFLATNPSND--ELLEFLRSANKLPEQ---LNWKTWK 375
                  + + L         D  ++         E    L     LP     + +    
Sbjct: 183 ------HTLISLTGPESKIKGDPRWMQERSWFGYTEGFRELVLKKNLPPSSLSIVYSVPV 236

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLETKY 429
           + +    +          + N   L+V+      G  ++    +  +           + 
Sbjct: 237 DKVLERIRML--------ILNAILLNVLA-----GAALFTLARMYERRIFIPAESDALRL 283

Query: 430 NTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
               +   + +     G+ +    DG   LSN     L  T  N L+     R     C 
Sbjct: 284 EEHEQFNRKIVASAPVGICILRTADGVNILSN----ELAHTYLNMLTHEDRQRLTQIICG 339

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           +  N       F  ++TS +    +LQ +           +I            V+V+  
Sbjct: 340 QQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI---------CVLVDVSSR 380

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L     +
Sbjct: 381 VKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGVDR 437

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    + 
Sbjct: 438 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 497

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++ G
Sbjct: 498 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVRADGDYLSIRVRDTG 556

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +   
Sbjct: 557 VGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFT 616

Query: 786 CRIPS 790
            RIP 
Sbjct: 617 VRIPL 621


>gi|260777592|ref|ZP_05886485.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605605|gb|EEX31890.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
          Length = 958

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 144/317 (45%), Gaps = 18/317 (5%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +A          +       +  S    ++ LQ   E L + V E +       + + 
Sbjct: 391 DELAHMGQAIITARNTAQSLKVVAESEAKAKRELQEHKEHLEELVTERTHQLQDTNKRLN 450

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             V      R +           +A   K +F+  +S+E+R+P+  ++G   LLK +   
Sbjct: 451 HEVLNHAKARRQAE---------QASRAKTAFLATMSHEIRTPMNGVLGTARLLKET--- 498

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LNSKQ  +V+ I+ S T LL ++ND+LD + ++AG +++      L D++ +V+Q +  
Sbjct: 499 GLNSKQGHFVDVINRSGTTLLAILNDVLDYSKIEAGHLEIRPVDFNLFDMVKDVQQLLDG 558

Query: 661 KMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---N 716
           +  E NI I  + +  +  F   D  R+ Q+ + ++ NA+ F+ +G  V +    D   +
Sbjct: 559 RAKEKNIEISTLIESDVSQFLYGDVTRISQVLTNLVGNAVKFTEQGH-VDIYVTYDPGQD 617

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSIS 775
           G  +F V + G  I ++  +++F+ F   +     + G GLGL+I +  +   GG + + 
Sbjct: 618 GQVLFEVSDTGIGISQEEQETLFDAFTQASGGMSSKGGTGLGLAISKRIVEAMGGFLQLE 677

Query: 776 SSDEGVTTINCRIPSKE 792
           S     +  +  +P  +
Sbjct: 678 SEVGQGSRFSFSVPLSQ 694


>gi|209527277|ref|ZP_03275787.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492265|gb|EDZ92610.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1051

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 125/259 (48%), Gaps = 18/259 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            + +    L    +A   A+  K+ F+ ++S+ELR+PL  I+GFT LL+  +  +L +K 
Sbjct: 545 QTQQQAAELKRVADAANVANRAKSEFLANMSHELRTPLNAILGFTQLLQRDR--TLAAKH 602

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ ++ S   LL L+ND+L+++ ++AG +  N +   +   L  ++  +  K     
Sbjct: 603 QEYIKIVNQSGQHLLELINDVLEMSKIEAGRITCNPTEFDIKRCLPAIQVMLQLKAESKG 662

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD------- 715
           + +    +  +  FV  D  +L Q+   ++SNA+ F+  G     V +    +       
Sbjct: 663 LTLNFQVEESVPKFVRTDESKLRQVLVNLISNAIKFTQDGEVSLRVSVGGVDEDLGLSDE 722

Query: 716 ----NGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGG 770
               N   +F + + G  I  +    +F  F    A R  ++G GLGL I + F+NL GG
Sbjct: 723 DWVSNTYLLFEIIDTGCGIASEEINDLFQAFKQTKAGRESQQGTGLGLVISQRFVNLMGG 782

Query: 771 HVSISSSDEGVTTINCRIP 789
            + +SS     +  + +IP
Sbjct: 783 EIKVSSKPGEGSCFSFQIP 801


>gi|170079238|ref|YP_001735876.1| PAS domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169886907|gb|ACB00621.1| PAS domain S-box protein [Synechococcus sp. PCC 7002]
          Length = 1430

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 127/754 (16%), Positives = 271/754 (35%), Gaps = 94/754 (12%)

Query: 117  NWL---KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL------- 166
            +WL      H  ++ +A  +++ +GQ+FD          ++ +G V    A         
Sbjct: 584  SWLAAVHPDHEGQIQRAIAQMQ-QGQNFDEEY-----RIVRPDGVVRWIYARSFKIYDPN 637

Query: 167  --RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
              ++L   G+ +++ E      KL +  +  + +FD     +   D+       N ++ +
Sbjct: 638  TQQLLRHVGVMTDVTERKEAELKLQSQEARLRTIFDQAALGIVQIDRTNHFSLVNQAFCE 697

Query: 225  NTETEGIVFQKAIGESRKLFKE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
                     Q+   +     ++     E + ++    A      +       G+    K+
Sbjct: 698  ICGYSEAELQQFTWQELTHPEDICICHEARAKLDRHQAASAVLEKRYRHRL-GHFIWVKV 756

Query: 280  V------RVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQ 329
            +                I  D+S+       L        +++  +   I  +   R   
Sbjct: 757  ICSYIYDDQGQPEYLLTIIEDISEYKQAAIALVESQHRYQKMVDGIPAIIYQYSPQRGGL 816

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI-FSVYKSSETH 388
            F++    ++   ++  L   P        +   + +      +T      F +       
Sbjct: 817  FYSSQVEQILGYEVQRLLDEPELWH--RSIHPEDVVDVDQVLQTLHTGKNFELEYRIRDA 874

Query: 389  KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
               WH     + ++               ++T + + +      +K+    +  +S  + 
Sbjct: 875  TGNWHWFYDCSFNIHAVDGGDLVIDGFALDITERKNFDEVLRHRLKL-ETMLAEMSHLMV 933

Query: 449  V---FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD---------- 495
            V      +  + L    F++   +          +  + +  +  + + D          
Sbjct: 934  VEAELNLEKVLALLGRTFQADRVSVMISQMEANSVERLVSWHAGPHLDLDENFNTIDLSA 993

Query: 496  ---GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-----IPLPNAQTMLT------ 541
                 D +        D +  L  T +     V    +     +P+ +A           
Sbjct: 994  YPWWLDHWQQQKVILFDRQHPLPETAKPEQTLVAYLDLKAVLWVPIQDATGQPWGYIACS 1053

Query: 542  -----------------------FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                                     N     +A + L    E    A+  KN F+  +S+
Sbjct: 1054 STAVDHLLWSKEDADILAIAGNLIYNYYQRQQANKQLELAKELAEAANHAKNQFLTSMSH 1113

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            ELR+PL  ++GFT +++ S    L++   +Y+  I  S   LL L+NDIL+LA  + G +
Sbjct: 1114 ELRTPLNAVLGFTQIMERSP--DLSTDHQEYLSIIHRSGKHLLALLNDILNLAKFEKGTL 1171

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
            +LN +   L+DLL+++ Q  A ++   NI++ +  D ++  ++ AD+ +L  +   +L+N
Sbjct: 1172 QLNPNLFNLHDLLDDLAQMYALEIQHKNIQLDIHWDEQVPRYINADQAKLHSVLLHLLNN 1231

Query: 698  AMDFSSKGST-VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGV 754
            A+ F+  G   + +K    N     FSV + G  I E     +F+ FV   A     +G 
Sbjct: 1232 ALKFTDSGCVQLTVKTLAQNPLRLRFSVTDTGIGIAETDFTRLFDNFVKLEAGDRMGQGS 1291

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL++ + F+NL GG + +SS     +  +  +
Sbjct: 1292 GLGLALSQKFVNLMGGEIVVSSQPGVGSCFSFEL 1325



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 76/593 (12%), Positives = 178/593 (30%), Gaps = 83/593 (13%)

Query: 38  IIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL----------TIVWD 87
           ++ ++  +  RN LA++VN   + L ++ +Q  +  +L      L             WD
Sbjct: 369 LLVVLTDVTARNHLAQQVNRYQTHLEDLIEQ--RTQALAASQARLAQAQAIAQIGVWEWD 426

Query: 88  GKDET----PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF-- 141
            +       PE   Q+               FE  +      ++    E +   GQS   
Sbjct: 427 VQANQTYWSPETF-QIFGFAPGEIQPNAETFFER-VHPDDRDRIRTNIENIF-TGQSLPS 483

Query: 142 -DLVAETQNDCA----------IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSN 190
            +    T +             +  +G+ S    FL      G   ++ +       L  
Sbjct: 484 SEYRIITPDGEVRYLKDYHELKLDKQGQPS----FLW-----GAVQDITKMQQTLNALQK 534

Query: 191 HISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTE-------TEGIVFQKAIGESRK 242
             + F+ L + +D   W       ++++ + +Y+K           +G  +  A+    +
Sbjct: 535 SETRFRELVEHIDEAFWINSPDPTEVIYVSPNYEKIWGLSCQSLLDDGTSWLAAVHPDHE 594

Query: 243 LFKEEIKKRMISSSALEKNFCETVS-TLEHG-NNKSYKIVRVLNSFG--EAGIAIDVSK- 297
              +    +M      ++ +       +      +S+KI            G+  DV++ 
Sbjct: 595 GQIQRAIAQMQQGQNFDEEYRIVRPDGVVRWIYARSFKIYDPNTQQLLRHVGVMTDVTER 654

Query: 298 ---EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
              E+ +  Q      I     + I   D+  +    N++F E+     A         E
Sbjct: 655 KEAELKLQSQEARLRTIFDQAALGIVQIDRTNHFSLVNQAFCEICGYSEA---------E 705

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIV--------T 405
           L +F       PE +            ++++    +  +    G  + V V         
Sbjct: 706 LQQFTWQELTHPEDICICHEARAKLDRHQAASAVLEKRYRHRLGHFIWVKVICSYIYDDQ 765

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
             P    + + E+++                 + +D +   +  + P       +     
Sbjct: 766 GQPE-YLLTIIEDISEYKQAAIALVESQHRYQKMVDGIPAIIYQYSPQRGGLFYSSQVEQ 824

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +   E  RL     +        R  +  D  D+   + T    +   L+  +   + + 
Sbjct: 825 ILGYEVQRLLDEPEL------WHRSIHPEDVVDVDQVLQTLHTGKNFELEYRIRDATGNW 878

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             +      N   +     V D    +    +  + + +      + +  +S+
Sbjct: 879 -HWFYDCSFNIHAVDGGDLVIDGFALDITERKNFDEVLRHRLKLETMLAEMSH 930


>gi|237717539|ref|ZP_04548020.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229453169|gb|EEO58960.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 419

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSPG 477
           +V  +      +K     + +++    +   D  +  +N                R+   
Sbjct: 26  EVHSKENKENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPIQVGGVTKRVGDL 85

Query: 478 THIRN-IAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLP 534
            H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   + ++  + 
Sbjct: 86  LHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTLCDVS 145

Query: 535 NAQT----------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            + T          +LT  +VT+    +R L+ + E    AD++K++F+ ++S+E+R+PL
Sbjct: 146 VSGTYLNIHGEDYMVLTVYDVTELKNVQRLLSIEREHSISADKLKSAFIANMSHEVRTPL 205

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ L+      S   ++  Y + I+ ++  LL LVNDI DL+ +++G +   Y+ 
Sbjct: 206 NAIVGFSGLM---VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTE 262

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              NDLL E++    TK++ +++ +   +  +     ++R+R++Q+ S +L NAM F+  
Sbjct: 263 FDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTES 322

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G   +  + +   +  F V + G  IP++  K +F+RF+      + +G GLGL++ ++ 
Sbjct: 323 GEIRLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD--REMQGTGLGLTLSQTI 380

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I   GG++ + S     +T +  +P
Sbjct: 381 IQNLGGNLELDSEINRGSTFSFVLP 405


>gi|167623151|ref|YP_001673445.1| hybrid sensory histidine kinase BarA [Shewanella halifaxensis
           HAW-EB4]
 gi|167353173|gb|ABZ75786.1| Hpt sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 929

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 133/321 (41%), Gaps = 14/321 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I  +    ++         L   +I   D  ++ +      LS+   E          
Sbjct: 212 QPITEMVRVVAKIREGKLDTRLTGNLIGELDLLKRGINAMAGSLSEYHDEMQQNIDQATS 271

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  IK+ F+ ++S+ELR+PL  +IGF   LLKT
Sbjct: 272 DLRETLEQIEIQNVE--LDMAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT 329

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+S Q  Y+  I  S+T LL+++NDILD + ++AG M L      L + L E   
Sbjct: 330 ----PLHSSQQDYIRTIERSATNLLSIINDILDFSKLEAGKMVLENIPFSLRETLEETVT 385

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST----VILK 711
            +++   E  +   +  D ++      D  R  QI + ++ NA+ F+ KGS      + +
Sbjct: 386 LLSSSAREKELEFVIDVDSRIPEDVTGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEE 445

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                      + + G  I +    S+F  F        RR  G GLGL I +  IN  G
Sbjct: 446 IKEQKVHLRCEIIDTGIGIDKQQQSSLFQAFGQADSSISRRFGGTGLGLVITKRLINRMG 505

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +   S  +  +T    +P 
Sbjct: 506 GQIGCYSEPKQGSTFWFSLPL 526


>gi|298482223|ref|ZP_07000410.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271510|gb|EFI13084.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 420

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 188/388 (48%), Gaps = 28/388 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSPG 477
           +V  +      +K     + +++    +   D  +  +N                R+   
Sbjct: 29  EVHSKENKENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPVQVGGVTKRVGDL 88

Query: 478 THIRN-IAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLP 534
            H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   E ++ P  
Sbjct: 89  LHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--EMTVTPCD 146

Query: 535 ------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                           +LT  +VT+    +R LT + E    A+++K++F+ ++S+E+R+
Sbjct: 147 VSVSGTYLNIHGQDYMVLTVYDVTELKNVQRLLTIEKEHSISAEKLKSAFIANMSHEVRT 206

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ L+      S   ++  Y + ++ ++  LL LVNDI DL+ +++G +   Y
Sbjct: 207 PLNAIVGFSGLM---VSASGEEERKMYADILAENNERLLRLVNDIFDLSQIESGTIDFVY 263

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           +   +NDLL E+      K++ +++++   +  +     ++R+R++Q+ S +L NAM F+
Sbjct: 264 TEFDVNDLLRELDGIFKAKLNNSSVKLICEAHVQPIIMYSERERIIQVLSNLLHNAMKFT 323

Query: 703 SKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           + G  +      +   +  F V + G  IPE+  K +F+RF+      + +G GLGL++ 
Sbjct: 324 ASGE-IRFGCRLEGMEEVYFFVSDTGIGIPEEEQKKIFSRFIKLD--REMQGTGLGLTLS 380

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ I   GG++ + S     +T +  +P
Sbjct: 381 QTIIQNLGGNLELDSKVNRGSTFSFVLP 408


>gi|261211774|ref|ZP_05926061.1| signal transduction histidine kinase [Vibrio sp. RC341]
 gi|260839124|gb|EEX65756.1| signal transduction histidine kinase [Vibrio sp. RC341]
          Length = 1182

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/363 (26%), Positives = 164/363 (45%), Gaps = 17/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +   +G + L+N A+R   +   N              CS  
Sbjct: 528 EQLRWLTELLDAIPSMIFISDANGDVVLTNAAYRQNHQVCSNNDCFNQR-----PDCSFI 582

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNVTDSV 549
               +    F+ II +  + R S+ G    +    + +   P+ + Q  LT F ++T+  
Sbjct: 583 DLPEEVNAEFSLIIQA-PEARCSIGGHYFHVIRRAISH---PINHGQYYLTLFNDITELK 638

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +    S N      
Sbjct: 639 ETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLKSSEN---QLL 695

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +    +S+  L   VNDILD + ++A  +KL+ +T  L D L  + +    +   N +  
Sbjct: 696 LTNAISSAERLKLHVNDILDFSKIEAEQLKLDIATYNLADELGPLLRGFEARAQLNQVEF 755

Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            VI     L     D  R  QI + +LSNA+ F+ +G  V++K           V+++G 
Sbjct: 756 DVIWLPNPLLVVDFDALRFNQIVTNLLSNAIKFTEQG-RVVVKVDVTPEQLNLVVEDSGC 814

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + +    S+F  FV       RR  G GLG+SIV + I L  G + I+S     T ++ 
Sbjct: 815 GMTQQQIDSIFVPFVQADSTITRRFGGTGLGMSIVSNLIELMQGRIDITSQFGQGTQVSV 874

Query: 787 RIP 789
            IP
Sbjct: 875 SIP 877



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           +QL    E+L  +   I I D N  +   N ++ +              N ++       
Sbjct: 528 EQLRWLTELLDAIPSMIFISDANGDVVLTNAAYRQ--------------NHQVCSNNDCF 573

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT--SNPRG---GTIWMFE 417
           N+ P+  ++    E + + +       +      G   HVI    S+P       + +F 
Sbjct: 574 NQRPD-CSFIDLPEEVNAEFSLIIQAPEARCSIGGHYFHVIRRAISHPINHGQYYLTLFN 632

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           ++T   + E       +   + ++  +  +AV   + R
Sbjct: 633 DITELKETEQALRQSNEQALQAVEARNHFLAVVSHELR 670


>gi|239637988|ref|ZP_04678949.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           warneri L37603]
 gi|239596551|gb|EEQ79087.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           warneri L37603]
          Length = 564

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 158/377 (41%), Gaps = 36/377 (9%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +L  +   L   Q         T++++   V +    G I ++N A+  ++ + E  +  
Sbjct: 208 ELARRLQKLNNRQKIQSNRLKTTLENIPSSVLMIDKHGEIVVANSAYYEVF-SPEQSVEN 266

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK---SLQGTLELLSDSVLEYSIIPL 533
            ++I  I     +             I+ SF  E+     ++  +  +     + S +P+
Sbjct: 267 KSYIGFINDKIEKL------------IMESFRTEKVIYDQIEVDINNVHTKYFDVSCVPI 314

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +         V         +      L+K + ++  FV +VS+EL++P+T+I GF + 
Sbjct: 315 LSKSKKKLQGMVV--------VLHDITNLQKLENLRREFVANVSHELKTPITSIKGFAET 366

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L            + ++  I   S  + +LV D+LDL+ ++    ++  S + L++L   
Sbjct: 367 LIEGAKND-EESLNMFLNIILKESNRIESLVMDLLDLSHIEQQN-EITTSYMNLSELAYT 424

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++  +    NI I+   +  +  F A+  ++ Q+ + +LSNA+++S+  + VI+   
Sbjct: 425 TIDNLQNQAQNKNITIESKIERDVI-FKANENKIAQVITNLLSNAINYSTNDNKVIVSVY 483

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
           R+       +++ G  I  +  K +F RF            G GLGLSI +  +  H G 
Sbjct: 484 REGKRVNLEIQDFGIGISAEEQKHIFERFYRVDKARSRDSGGTGLGLSITKHIVESHNGR 543

Query: 772 VSISSSDEGVTTINCRI 788
           +S+ S     +T     
Sbjct: 544 ISVISRLNEGSTFKVTF 560


>gi|186686479|ref|YP_001869675.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468931|gb|ACC84732.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 761

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 108/566 (19%), Positives = 201/566 (35%), Gaps = 87/566 (15%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP------- 350
            I V  +     E+         + D    +   N++   L  I   FL   P       
Sbjct: 60  RIAVEKERQRYQELFDFAPDGYLVTDTYGTILEANQATTILLNISQRFLIRKPLVSFIGQ 119

Query: 351 -SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             +     +L     L     W+          +  E       L      + +      
Sbjct: 120 SDHQAFFNYLTQLQHLDRGGEWEV-------CLQPREKLCFDVALTVVTVCNDLGKP--- 169

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQ------------------------------GET 439
               W+  +++ +  LE++   L + +                                T
Sbjct: 170 VALRWLMRDISKRKRLESEREQLFEREQAARIAAEAAQRRSNFLAEASRVLASSLDYRNT 229

Query: 440 IDHLSEGVAVFGPDGRIK---------LSNPAFRSLWKTEE---NRLSPGTHIRNIAATC 487
           +  +++       D  I           +NP   +    +E    +L     I   A   
Sbjct: 230 LTTVAQLAVPTLADWCIVDVVENNSAAFNNPVIAASDPQKEALVRKLRQRYPISIDADYG 289

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--------- 538
                 +   +L A I+      +      L LL   V  Y ++PL   Q          
Sbjct: 290 LPKVLRTGKPELVANILEYSLQRKAWNDEYLNLL--QVKSYMVVPLQVRQHKLGTIVFAS 347

Query: 539 --MLTFVNVTDSVRAER---------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             +  +    D   AE+            +     ++A+ IK+ F+  VS+ELR+PL ++
Sbjct: 348 TQLGRYYTTVDLAMAEQLAQRAASAIENAQLYWQAQEANRIKDEFLAIVSHELRTPLNSM 407

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  +++  KL    +  S+ +E I  ++ +   L++DILD++ +  G ++LN   + L
Sbjct: 408 LGWVQIIRHRKLD--EAITSKALETIERNAKLQSKLIDDILDISRIVQGKIRLNLRKVDL 465

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++N   ++I       +I+++   D  +G  + D +RL Q+   +LSNA+ F+  G  
Sbjct: 466 VIVINTAIEAIYPTSEIKDIQVESNLDSSVGEIMGDAERLQQVVWNLLSNAVKFTPSGGR 525

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           V +   + N +   SV + G  I  +    +F RF        R   G+GLGL+IV   +
Sbjct: 526 VEVCLKQVNSNAQISVSDTGKGISGEFLPYIFERFRQADSTTTRVDGGLGLGLAIVRHLV 585

Query: 766 NLHGGHVSISSSDEG-VTTINCRIPS 790
            +H G V   S  EG   T    +P 
Sbjct: 586 EIHSGTVYAVSEGEGLGATFTVLLPL 611


>gi|310642322|ref|YP_003947080.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309247272|gb|ADO56839.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 476

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 4/245 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +       L    + + + ++IK+ F+  +S+ELR+PLT+I G+++ L +        +
Sbjct: 219 YELGELASTLNYMAQEIVRTNQIKDDFISSISHELRTPLTSIKGWSETLNSGGYDP--EE 276

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               ++ IS  +  L+ LV +ILD + ++   MKL   T+ L +LL E+  ++  K    
Sbjct: 277 TKIGMQIISKETDRLIGLVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMK 336

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I++++ S+        D  RL Q+F  I+ NA+ FS + S + L   R  G+   SV++
Sbjct: 337 QIKLQLDSEETAYLVHGDGNRLKQVFLNIVDNAIKFSHESSIIYLSLQRVKGNIEISVQD 396

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  I E+    V +RF    H  Q  G GLGL+I + F+  H G + I S     TTI 
Sbjct: 397 TGIGISEENLARVRDRFFQVDH--QNGGTGLGLAISQQFVERHHGQMLIRSELGAGTTIT 454

Query: 786 CRIPS 790
             +P+
Sbjct: 455 VSLPA 459


>gi|94313181|ref|YP_586390.1| PAS/PAC sensor, hybrid histidine kinase [Cupriavidus metallidurans
            CH34]
 gi|93357033|gb|ABF11121.1| PAS/PAC sensor, hybrid histidine kinase [Cupriavidus metallidurans
            CH34]
          Length = 1418

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 105/520 (20%), Positives = 207/520 (39%), Gaps = 43/520 (8%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             +  +  QL     ++  + + I + D        N +F               +  +++
Sbjct: 523  AKQQLQAQLDFQRTLIDAVPIPITVKDAQGRYVEVNAAFQS---------RAGMTRQQMV 573

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT--WHLPNGQTLHVIVTSNPR----- 409
              L +   +P     +  +       ++ +  +    +   +G+  + +  + P      
Sbjct: 574  GHLPTELNVPGNRAAEALEAGSRRALETQQLQQFAVDYVDADGKQRYYLCWAQPIKRVGP 633

Query: 410  --GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKL---SNPAF 463
               G I    ++T   + E K      +  +   HL      +   DG       S  A 
Sbjct: 634  EFAGVISAAVDVTEIRNAEAKAQAAEAMLVDATRHLPATAFRMRERDGVFSYEWVSGNAQ 693

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
            + L ++ E+ + P   +  +A    R    +   +          D R  ++G       
Sbjct: 694  QLLGRSSESLIGPANPLLGMANVEDRIAALAAAEEAKTTGRPLSADMRLLIRG-----QT 748

Query: 524  SVLEYSIIP--LPNAQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYE 579
              +    +P   P+   +     V  +   ERA  L +  +A   A   K+SF+  +S+E
Sbjct: 749  RWIRIHAVPKTEPDGGVLWHGYYVDLTEERERANALAQAKDAAEAASRAKDSFLAMMSHE 808

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            +R+P+  I+G  +LL+ +    L ++Q + V     S   L  +++DILD A ++AG + 
Sbjct: 809  IRTPMNGILGLIELLQRT---PLTAEQQRMVALAGESGQALGRILDDILDYAKLEAGRLA 865

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
            +  + + L +L + V  S+  +  +  +R+K     ++ + V AD  RL QI   +L NA
Sbjct: 866  ILRAPVDLRELFDGVLGSLLPQAFQKGLRLKQRVSAEVAAIVQADGIRLRQILFNLLGNA 925

Query: 699  MDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
            + F+  GS V+L+A  + G       +  V++ G  I       +F  F+ +     RR 
Sbjct: 926  IKFTDHGS-VMLRATMEPGATGLPMLVVVVEDTGIGIARTDLARLFAPFMQSERSTARRF 984

Query: 753  -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLGL+IV +   L  G +++ S     TT   R+P +
Sbjct: 985  GGTGLGLTIVRTLAELMDGEITLKSEAGVGTTAVLRVPCE 1024



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 36/283 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           + S   +  E +   L  ++L   +   + L D++   +  +D  G  +  N +++    
Sbjct: 507 LRSQYRLRREASARRLAKQQLQAQLDFQRTLIDAVPIPITVKDAQGRYVEVNAAFQSRA- 565

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS--------TLEHGNNKSY-- 277
             G+  Q+ +G           +   +  A  +   ET              G  + Y  
Sbjct: 566 --GMTRQQMVGHLPTELNVPGNRAAEALEAGSRRALETQQLQQFAVDYVDADGKQRYYLC 623

Query: 278 ---KIVRVLNSF-GEAGIAIDVSKEITVNDQLTHTYEIL----HNLT-VAIAIFDQNRYL 328
               I RV   F G    A+DV++      +      +L     +L   A  + +++   
Sbjct: 624 WAQPIKRVGPEFAGVISAAVDVTEIRNAEAKAQAAEAMLVDATRHLPATAFRMRERDGVF 683

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET- 387
            +        W    A      S++ L+        +    +             +    
Sbjct: 684 SYE-------WVSGNAQQLLGRSSESLIGPANPLLGMANVEDRIAALAAAEEAKTTGRPL 736

Query: 388 HKDTWHLPNGQTLHVIV----TSNPRGGTIWM--FENLTVQVD 424
             D   L  GQT  + +     + P GG +W   + +LT + +
Sbjct: 737 SADMRLLIRGQTRWIRIHAVPKTEPDGGVLWHGYYVDLTEERE 779



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 86/311 (27%), Gaps = 53/311 (17%)

Query: 30  IAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGK 89
           IA  L+  I+ I +L+R +  L ++ +       ++  QL    +L+        V D +
Sbjct: 492 IAPYLVAVIVIIGILLRSQYRLRREASARRLAKQQLQAQLDFQRTLIDAVPIPITVKDAQ 551

Query: 90  D---------------ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKL 134
                              +++G L   +++P                    L   + + 
Sbjct: 552 GRYVEVNAAFQSRAGMTRQQMVGHLPTELNVPGNRA-------------AEALEAGSRRA 598

Query: 135 RKEGQSFDLVAETQNDCAIKIEGR----VSGSCAFLR----ILSLDGIYSELAETTLKCK 186
            +  Q      +      +  +G+    +  +    R       +     ++ E      
Sbjct: 599 LETQQLQQFAVD-----YVDADGKQRYYLCWAQPIKRVGPEFAGVISAAVDVTEIRNAEA 653

Query: 187 KLSNHISVFKVLFDSLDFLVWH---RDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           K     ++       L    +    RD      W + + ++                  +
Sbjct: 654 KAQAAEAMLVDATRHLPATAFRMRERDGVFSYEWVSGNAQQLLGRSSESLIGPANPLLGM 713

Query: 244 FKEEIK----KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--NSFGEA---GIAID 294
              E +         +    +     +  L  G  +  +I  V      G     G  +D
Sbjct: 714 ANVEDRIAALAAAEEAKTTGRPLSADMRLLIRGQTRWIRIHAVPKTEPDGGVLWHGYYVD 773

Query: 295 VSKEITVNDQL 305
           +++E    + L
Sbjct: 774 LTEERERANAL 784



 Score = 38.0 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 9/102 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL----- 474
           + +   + +    +  Q   ID +   + V    GR    N AF+S       ++     
Sbjct: 518 SARRLAKQQLQAQLDFQRTLIDAVPIPITVKDAQGRYVEVNAAFQSRAGMTRQQMVGHLP 577

Query: 475 ----SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
                PG          SR   E+     FA      D +++
Sbjct: 578 TELNVPGNRAAEALEAGSRRALETQQLQQFAVDYVDADGKQR 619


>gi|113969135|ref|YP_732928.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883819|gb|ABI37871.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1118

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/510 (17%), Positives = 200/510 (39%), Gaps = 37/510 (7%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
                     +++     I   D    +   N++   +     A L        + E +R
Sbjct: 274 AKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSPAELLGENVKKIVPESIR 333

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFE 417
             +         T +  I    +  E      H      + + +    +G     +    
Sbjct: 334 PHHDGYLARYINTREAQIIGTGREVEAQHKAGH---SVPVRLSIGHVMQGKAHYFVGFLS 390

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVA-----------VFGPDGRIKLS-NPAFRS 465
           +L+++ ++E +           I ++  G+A           VF  +  + ++  PA   
Sbjct: 391 DLSLRNEMEQELKNNEAKFRSLITNIP-GIAYRCKSTEGWPMVFISEAVLNITGYPAEDF 449

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                +   S   +  +I +  ++    +   +    II +  + R   +    +L ++ 
Sbjct: 450 ELPHPKRFFSDLYYPDDIESIYAQAQPPTFSMEY--RIIRADGEVRWLFEHGNYILDETS 507

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E  I            +++T+    E+ L        +A   + +F+ ++S+E+R+P+ 
Sbjct: 508 NEVWIDGF--------LMDITERKVMEQDLVTAKNNAEQAAAARAAFLANMSHEIRTPMN 559

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIGF+D+L  S    L+++Q + +  I+ S+  L++L+ND+LD A +D G ++L     
Sbjct: 560 AIIGFSDILLESV---LDTEQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKLELENRVF 616

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
            L D ++ V  ++  +  +  + ++V     + + F+   +R+ Q+   ++ NA+ F+ +
Sbjct: 617 CLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGNAVKFTCE 676

Query: 705 GSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
           G  V +     N + + F + + G  +  +    VF  F         +  G GLG +I 
Sbjct: 677 G-KVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTGLGTTIS 735

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  + L GG +   S+    +T    IP +
Sbjct: 736 KQLVELMGGQLEAESTLGQGSTFRFTIPLQ 765



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 16/180 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +   +    DL     +        ++   +G+      G I   N A  ++     
Sbjct: 257 LVLIVNVIFKYKDLSLLAKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSP 316

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L  G +++ I     R +++                  + ++   +      +  SI 
Sbjct: 317 AELL-GENVKKIVPESIRPHHDGYLARYINTREAQIIGTGREVEAQHKAGHSVPVRLSI- 374

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                  M    +      ++ +L  + E   K +E K           RS +TNI G  
Sbjct: 375 ----GHVMQGKAHYFVGFLSDLSLRNEMEQELKNNEAK----------FRSLITNIPGIA 420


>gi|262164909|ref|ZP_06032647.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223]
 gi|262027289|gb|EEY45956.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223]
          Length = 857

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/495 (18%), Positives = 191/495 (38%), Gaps = 50/495 (10%)

Query: 325 NRYLQFHNRSFVELWEIDLAFLATN--PSNDELLEFLRSANKLPEQLNWKTWKENIF--- 379
           +  +   N +  + + +   FL     P+   +     + N L  + N+  W        
Sbjct: 233 DYVMSSANDAMNDSFIVGQTFLDVEGVPTYLCVYSIQPNKNVLTLRDNFYFWMAFALVSM 292

Query: 380 -------SVYKSSETHKDTWHLPN--GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
                    +       +   L +   + + +   S   G  I+ F+       LE  + 
Sbjct: 293 IAVSIASRWWLQKRIQSEIETLMSYTHKLMELDTKSQFAGSKIYEFDYFG--RTLEQSFR 350

Query: 431 TL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            L    K   +  +       ++   GR+   NP+ +               I+ +    
Sbjct: 351 RLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQ---------------IQFLREDA 395

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLTFVNVT 546
             ++           +IT     +   + T E+    V  +++ P+    Q +       
Sbjct: 396 QNHFLFEILERQLLPMITYAAQGKNPSEVTTEV-DGRVYRWNLSPIMVEGQIISIITQGQ 454

Query: 547 D---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +    L 
Sbjct: 455 DVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PLT 511

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V  + +S   LL ++NDILD + ++ G  ++  S   L +L+  + +      +
Sbjct: 512 DEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCN 571

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           +  I + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + +      GD    
Sbjct: 572 DKGIALVVESNITSATLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPLAQ 630

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            +  V + G  I E+    +F  F+       R   G GLGL+IV S + +  G + +SS
Sbjct: 631 LVIQVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSS 690

Query: 777 SDEGVTTINCRIPSK 791
                T    ++P +
Sbjct: 691 EYGHGTRFEIQLPIE 705


>gi|189466077|ref|ZP_03014862.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
 gi|189434341|gb|EDV03326.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
          Length = 1045

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 102/519 (19%), Positives = 215/519 (41%), Gaps = 47/519 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           K+      +T  + +  N+ +       ++D    +             D   +  NP  
Sbjct: 404 KQAEQIKLMTSYHSLFENMPIVYLKQQLVYDSAGKIV------------DYITVEANPRF 451

Query: 353 DELLEFLRS-ANKLPEQLNWKTWKENIFSVYKSSETHK----DTWHLPN-GQTLHVIVTS 406
           ++  + +     K   + + K + E +  +Y    + +      ++  N G   +VI+T 
Sbjct: 452 EKYFKSMGEVIGKRGSEADPKGF-ERMCHLYSMVNSTQKELSYQYYYENIGNYFNVILTP 510

Query: 407 NPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETID---------HLSEGVAVFGPDGRI 456
           +   G + +F  + T   + +    +       ++D          L +G  +   +  +
Sbjct: 511 SKHKGYVDVFCVDNTELAETQQMLRSANHKLSMSLDVANIVPWKWDLEKGTMLCDVNRPV 570

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +LS+    S+   E+  +    +   I          +   +L    ++   +E + +  
Sbjct: 571 ELSHD--DSMMNEEQLSVPDYQYFAKICKEDRDRVKRA-YKELTEGNVSKIREEYRVIVR 627

Query: 517 TLELLSDSVLEYSIIPLPNAQ------TMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
              +     +E         +       + + + +T   + E  L    E   +++ +K+
Sbjct: 628 KNGISRYEWVEAQATVDKRDEKGNPITLVGSSLVITGRKKMEEDLITAKEKAEESNRLKS 687

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+E+R+PL  I+GF+ +L  ++         +Y+  I  ++T+LL LV DIL+L
Sbjct: 688 AFLANMSHEIRTPLNAIVGFSSILADTEEQEEK---EEYINIIENNNTLLLQLVGDILEL 744

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +++G ++  +S + LN L  E+++S   +     + I+ I +    +   +R RL Q+
Sbjct: 745 SKIESGTLEFVFSDLDLNALFKEIEESAQLRQKNEAVPIRYIPEMPDCTVNIERNRLTQV 804

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            + +L+NAM F+  GS       +D     F V + G  I ED   +VF RFV      Q
Sbjct: 805 MTNMLNNAMKFTYSGSVTFGYRLKDTDSLYFYVTDTGCGIEEDKKDTVFGRFVKLDSFSQ 864

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGLSI +S +   GG + + S     +T    +P
Sbjct: 865 --GTGLGLSICQSVVENLGGSIGVESEPGKGSTFWFTLP 901


>gi|261251133|ref|ZP_05943707.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio orientalis CIP
           102891]
 gi|260938006|gb|EEX93994.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio orientalis CIP
           102891]
          Length = 852

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 156/371 (42%), Gaps = 26/371 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N   K   +  +     V ++  +G++   NP+    +KT++ R       R +  +
Sbjct: 349 KRLNEQEKQFADLFNFSLSPVTLWNVEGQLVRFNPSAERCFKTDKAR-------RLLIES 401

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
              +            I T+   +      +      SV+            M    ++T
Sbjct: 402 LQPHIRMCAQGATLTGINTTIAKKTFRWNLSPITTDSSVIRI----------MAQGQDIT 451

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             + AE+      E   ++  ++  F+  +S+ELR+PL  I+G + LLK+      + + 
Sbjct: 452 SFIEAEKQSEAAREEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKSKMD---DPRD 508

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++E +  S   LL ++NDILD + ++ G   +  +   L +L N V++          
Sbjct: 509 VEHMEVLCNSGEHLLAVLNDILDFSKIEHGKFHIEKTAFRLAELTNTVEKIFKPLCDNKG 568

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIFS 722
           +   V S+ +  S+V +D+ R+ QI   ++SNA+ F+ +G   V++ A   +        
Sbjct: 569 VDFSVESNIESDSWVFSDQIRINQILFNLVSNAVKFTHQGQVQVVVNALERDEATWLKVD 628

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I +   K +F  FV       R   G GLGL+IV S +++  G + I S    
Sbjct: 629 VFDTGIGIEKSKLKDIFEPFVQAESTTTREYGGSGLGLAIVRSLVSIMDGEIEIESEVAQ 688

Query: 781 VTTINCRIPSK 791
            T     +P +
Sbjct: 689 GTHFTVHVPIQ 699


>gi|254442552|ref|ZP_05056028.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256860|gb|EDY81168.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 931

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 93/430 (21%), Positives = 175/430 (40%), Gaps = 30/430 (6%)

Query: 376 ENIFSVYKSSETH--KDTWHLPNGQTLH---VIVTSNPRGGTIWMFENLTVQVD--LETK 428
            +   + ++ E    K  W        H   ++      GG+   F+ ++ Q++  LET 
Sbjct: 86  RHQLELMRAEEEAWGKYDWERVEATFTHYADLVANGRMEGGS--SFDRVSEQLESSLETM 143

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
               ++V       + +   +      + L    F  L    E        I  ++    
Sbjct: 144 EGAAMQVLRRQEASIRDMKWISACGSLLSLFALCFFYLRTIRETIRRLSVPIMLLSRAAD 203

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R    +    +    +        SL      + + V E +I       T +      + 
Sbjct: 204 RAVKGARRIRMKDTNVVELHSLGASLSKFANDMHELVDERTI-----EITKVNKALEAEI 258

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            RAE          ++A+E K++F+ ++S+E+R+P+  I+G   +L+ +    LN  Q +
Sbjct: 259 DRAEA----FARRAKEAEEAKSNFLANMSHEIRTPMNGIVGMNTVLRET---PLNDMQRR 311

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+E ++  S  L+ L+NDILD + ++AG +++  S   L ++L EV         +  I 
Sbjct: 312 YLETMANCSESLMVLINDILDFSKIEAGKLEVENSAFDLIEVLEEVSSLFGMTASQKGID 371

Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFS 722
           +  + DG++      D  RL Q+ S +++NA+ F+ +G  + +    D G          
Sbjct: 372 LICLQDGRMSEPVFGDPHRLKQVLSNLVNNAIKFTEEGE-IEIGLRIDEGGPLDSVANIW 430

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           +++ G  IPE + K +F  F        R   G GLGL I +  + L GG + I S    
Sbjct: 431 IQDTGIGIPESVQKRLFKAFSQADESTSRKFGGTGLGLVISQRLVELMGGTIGIESESGV 490

Query: 781 VTTINCRIPS 790
            +    +IP 
Sbjct: 491 GSKFWIQIPL 500


>gi|257062029|ref|YP_003139917.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256592195|gb|ACV03082.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 851

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 5/262 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L     ++   +VT+  R  + L  KN  L + + +K+ F+  +S+EL+SPLT ++G + 
Sbjct: 316 LGGEIYLVLATDVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSS 375

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL   K+G LN++Q  Y E I  S   L+ LVND+LDL  ++ G +KL++  + + ++  
Sbjct: 376 LLGEQKVGELNTRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICE 435

Query: 653 EVKQSIATKMHENN---IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
               SI  K        + I +  +  L   +AD  RL Q+   +L NAM F+     V 
Sbjct: 436 RAYHSIIEKYQSKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVG 495

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           ++ +R      F+V + G  IPE+    +F +F    +    +  G GLGL + +     
Sbjct: 496 IRVSRWENWIAFTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARA 555

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +S  S +   +     +P
Sbjct: 556 HGGDISFISKEGQGSQFTLLLP 577


>gi|14133665|gb|AAK54095.1|AF362376_1 histidine kinase DhkK [Dictyostelium discoideum]
          Length = 1213

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 135/287 (47%), Gaps = 21/287 (7%)

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYEL 580
            +++ +II +    T+     + ++ R  +     LT   +A  +A + +  F+  +S+E+
Sbjct: 768  IIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQLTIAKDAAIEAYQARQEFLATMSHEI 827

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+PL  +IG   LL+ S   +L  ++    + + +   ILL LVNDILDL+ ++A  M L
Sbjct: 828  RTPLNGLIGMATLLRDSH--NLPPEEKTMAKAVKSCGDILLRLVNDILDLSKLEANQMGL 885

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAM 699
             +    + +L  ++   ++ + +E NI +      K+ S  + D  R+LQI   +  NA+
Sbjct: 886  EHIPFRMRELTQQICHVLSGQANEKNIHLSCEVSDKIPSILLGDSGRILQILMNLTGNAL 945

Query: 700  DFSSKGST-VILKAARDNGDFI----------FSVKNNGSSIPEDMCKSVFNRFVSNA-- 746
             F+  G   +I+    +  + +          F VK+ G  +P +  + +F  FV     
Sbjct: 946  KFTQSGYVKIIIDLIEEESELVSLKKGEYNISFRVKDTGIGVPVESHQKIFEAFVQADPS 1005

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE-GVTTINCRIPSKE 792
               +  G GLGL +    + L  G + + ++ +   +T    +P +E
Sbjct: 1006 DSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPDCDGSTFWFILPLEE 1052


>gi|66816785|ref|XP_642392.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74841827|sp|Q86CZ2|DHKK_DICDI RecName: Full=Hybrid signal transduction histidine kinase K; AltName:
            Full=Protein sombrero
 gi|30230651|gb|AAP20874.1| sombrero SmbA [Dictyostelium discoideum]
 gi|60470136|gb|EAL68116.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1213

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 135/287 (47%), Gaps = 21/287 (7%)

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYEL 580
            +++ +II +    T+     + ++ R  +     LT   +A  +A + +  F+  +S+E+
Sbjct: 768  IIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQLTIAKDAAIEAYQARQEFLATMSHEI 827

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+PL  +IG   LL+ S   +L  ++    + + +   ILL LVNDILDL+ ++A  M L
Sbjct: 828  RTPLNGLIGMATLLRDSH--NLPPEEKTMAKAVKSCGDILLRLVNDILDLSKLEANQMGL 885

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAM 699
             +    + +L  ++   ++ + +E NI +      K+ S  + D  R+LQI   +  NA+
Sbjct: 886  EHIPFRMRELTQQICHVLSGQANEKNIHLSCEVSDKIPSILLGDSGRILQILMNLTGNAL 945

Query: 700  DFSSKGST-VILKAARDNGDFI----------FSVKNNGSSIPEDMCKSVFNRFVSNA-- 746
             F+  G   +I+    +  + +          F VK+ G  +P +  + +F  FV     
Sbjct: 946  KFTQSGYVKIIIDLIEEESELVSLKKGEYNISFRVKDTGIGVPVESHQKIFEAFVQADPS 1005

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE-GVTTINCRIPSKE 792
               +  G GLGL +    + L  G + + ++ +   +T    +P +E
Sbjct: 1006 DSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPDCDGSTFWFILPLEE 1052


>gi|323698578|ref|ZP_08110490.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458510|gb|EGB14375.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1118

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 10/251 (3%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R  R L     A  +A+  K+ F+  +S+E+R+P+  IIG T L   ++   L +KQ+
Sbjct: 349 RERNGRELETARRAAEEANRAKSDFLARMSHEIRTPMNAIIGLTHLALKTQ---LTAKQA 405

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  +S S+  LL ++NDILD + ++AG + ++ +  +L+D+LN +   +     +  I
Sbjct: 406 DYLAKVSLSANSLLGIINDILDFSKIEAGRLTVDEADFLLDDVLNNIINMLGLSAEQKGI 465

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFS 722
              ++    +      D  RL Q+   + +NA+ F+ KG  ++    L+         FS
Sbjct: 466 EFLLLVRSTVPNRVRGDALRLGQVLLNLTNNAIKFTEKGEVILQADLLEQDGTTAVIRFS 525

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  +    +F  F        R   G GLGLSI +  + + GG +++ S    
Sbjct: 526 VRDTGIGIGPEHLDQLFQPFSQADGSITRQFGGTGLGLSISKRLVKMMGGDMAVVSEPGK 585

Query: 781 VTTINCRIPSK 791
            +  +  +P K
Sbjct: 586 GSEFSFTLPLK 596


>gi|255013294|ref|ZP_05285420.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 547

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 228/525 (43%), Gaps = 56/525 (10%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIF------DQNRYLQFHNRSFVELWEIDLAFL 346
           ++ ++  T+         +L N+  ++ I+        N    + +    +L+      +
Sbjct: 48  VNTTENKTLEQDYRDLAGLLSNIVDSLPIYFFVKDTGDNFRYVYSSPLMNQLYGRYHNDV 107

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNG--QTLHV 402
                 D  L+           +  +++++    V K+ +  +    +  P G  +T+  
Sbjct: 108 VGKTDFDLFLD----------PVVAQSFRDMDEEVVKTGKMQRFVEQMIDPKGILRTMDT 157

Query: 403 IVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           +    PR       + +  ++T Q  +E + ++  K            +A+    G+I  
Sbjct: 158 MKLLAPREDKPPYLVGISWDITKQRQVEEELHSYNKR-----------LALACQAGKIYP 206

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAIITSF-DDERKSLQ 515
               +  +  T E  L     I+++  T + +      D   ++  I T+F   E  S++
Sbjct: 207 W--LWDLVNGTAELSLEENGQIKHVQITHASFTEKIHPDYRKVYENITTAFMRGEIDSMR 264

Query: 516 GTL--ELLSDSVLEYSII-----PLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKAD 566
            +      SD  +    I       P+ + + +   + D    +   A  +      ++D
Sbjct: 265 FSFPCRYFSDEYVWLEKIGEVYEADPDGKPIRSIGILRDMTVDKRHEADVQAKRLAEESD 324

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL  S        + +Y+  I +S+  LL L+ D
Sbjct: 325 RMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEE---KKEYLRIIESSNEFLLQLIGD 381

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ +++G M+  Y+T+ L+++    +Q+ A ++   ++++   SDG     V+++ R
Sbjct: 382 ILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVAP-DVKVIFESDGNDYCIVSEKTR 440

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+ +  LSNA+ F+S GS +       +      V + G  I ++   S+FNRFV   
Sbjct: 441 LTQVLTNFLSNAVKFTSSGS-IRFGYRLTDDGIYVYVTDTGMGISKESQASIFNRFVKLN 499

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 500 SF--KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 542


>gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
 gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
          Length = 949

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 247/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++  +
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDML 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|262273972|ref|ZP_06051784.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262221782|gb|EEY73095.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1112

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 114/556 (20%), Positives = 211/556 (37%), Gaps = 82/556 (14%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                 +     +   I+H+    + +  +N  +   N +   ++E+D   L     +  
Sbjct: 166 ARAIKEIESSKNYLNTIIHSYKDGLLVLGENHQVSTLNEAAKRMFELDDVPLEDITLSKI 225

Query: 355 LLEFLRSANKLPEQ---------LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           + + +  +     Q         +N++  + +   + +      D     N +TL V   
Sbjct: 226 IAKVVPDSRAYFSQSLYGFNTKNINYELIRTHDRQIVQVRSNKIDV----NEKTLQV--- 278

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                    +  ++T Q   + K +   ++    +  L +   V   D          + 
Sbjct: 279 --------AIIRDITEQHLDKMKVSKGAELF-SAVKTLQDKFLV--SDDFHNSFREVLKI 327

Query: 466 LWKTEENR------LSPGTHIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           L K  E+       L  G   R  + A      N     D    ++    D +K    +L
Sbjct: 328 LLKIGESNHGIIVELDHGEPDRYRVLAQTRLIANGYVSEDFVRDVVGRVIDTKKG-DRSL 386

Query: 519 ELLSDS------VLEYSIIPLP-NAQTMLTFVNVTDSVRAE------------------- 552
           +L+  S      ++    +PL  + Q +       +S   E                   
Sbjct: 387 QLMGLSANSGKLIINALSMPLYLSNQLVGVVCLFDESTNYEDDLVSWLEPVLSSLSAMVN 446

Query: 553 ------------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                         +    E   +A+E K +F+  +S+E+R+P+  I+G ++LLK +   
Sbjct: 447 FVRQKKLNDMISEEMVRAKEDAERANEAKTNFLAMMSHEIRTPMNGIVGMSNLLKET--- 503

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +QS +V+ +  SS  LLN++ND+LDL  ++AG M+L      L DL+++       
Sbjct: 504 DLNQQQSYFVDTLIHSSNALLNIINDVLDLTKIEAGKMRLIEQESELTDLVHDALVVFHA 563

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG- 717
           K  E ++R+  + D  L    + D  R  QI   ++ NA+ F+  GS  V L    + G 
Sbjct: 564 KAVEKSLRLHCLIDPHLPRWLILDPVRYTQIILNLVGNALKFTKHGSVMVHLSLVTEGGS 623

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
                 VK++G  IPED   ++F  F    +      +G GLGL +   FI L  G + +
Sbjct: 624 DMLRLEVKDSGIGIPEDKLHNIFENFTQVDNSYSRSYQGTGLGLPVCRKFIELMDGDIRV 683

Query: 775 SSSDEGVTTINCRIPS 790
            S +   TT    +P 
Sbjct: 684 VSKEAVGTTFTADVPL 699


>gi|256829959|ref|YP_003158687.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579135|gb|ACU90271.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 705

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/510 (15%), Positives = 181/510 (35%), Gaps = 33/510 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + ++     ++     V      +   +   N +   +  I    L        + + 
Sbjct: 67  AELEEEHQQYLDLYDFAPVGYCTLSEQGQITATNLTATAMLGIPRDNLIGQQITSFICDD 126

Query: 359 LRSA--NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI-WM 415
            +     ++ E    +  +     + K+       W       L  ++           +
Sbjct: 127 DQHTFTREMKELFATRVARSCELRMKKTDGVQ--FWA-----CLEFVLKPCDDCPVCRVV 179

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++  +   E              +     +   G D      N  +         +  
Sbjct: 180 ISDINDRKQAEIALTESELHFRNLSNSGQALIWTSGEDTLCDYFNEPWLDFTGRTLEQEL 239

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               +  + A       ++           + +   + + G    L D        P  N
Sbjct: 240 GNGWVEGVHAEDLDRCIDTYVTAFARREPFNMEYRLRHVSGEYRWLVD-----QGTPRFN 294

Query: 536 AQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +Q      +   +++T   + E  L     A   A++ K++F+ ++S+E+R+PL  ++G 
Sbjct: 295 SQGAFVGYIGHCLDITPRKQMEVELVAAKNAAESANKAKSAFLANMSHEIRTPLNGLLGM 354

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL+T+     + +Q  Y+E    S   L  L++DILDL+ ++AG M L+     L++ 
Sbjct: 355 MQLLETT---DTSDEQQMYIEMAIRSGGRLTRLLSDILDLSRIEAGRMPLSEEPFNLSET 411

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + V  S      +  + +++     +      D  R+ Q+   ++ NAM F+ +G  V 
Sbjct: 412 FSAVTDSFGPVSIQKRLPVRIDVAPDVPKEVFGDEVRVRQVLFNLVGNAMKFTDQGE-VR 470

Query: 710 LKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
           ++ +       D    +F V + G+ + +   K++ N F   +     + +G GLGLSI 
Sbjct: 471 IEVSTLLPLPPDTVRVLFCVTDTGAGMSDTTLKTLGNPFTQASEGFTREHQGAGLGLSIC 530

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  +   GG ++  S+    T     +P +
Sbjct: 531 KRLVAAMGGTLTFESTLGAGTAAYLMLPFR 560


>gi|83953721|ref|ZP_00962442.1| PAS [Sulfitobacter sp. NAS-14.1]
 gi|83841666|gb|EAP80835.1| PAS [Sulfitobacter sp. NAS-14.1]
          Length = 698

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/403 (23%), Positives = 171/403 (42%), Gaps = 48/403 (11%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + +  +      +    I+ L++G  +F    R+ LSN  ++ +++     L PG     
Sbjct: 299 LQVSERRKRAEVLLSSGIEALNDGFVMFDAQDRLLLSNSKYKEMYELPSEVLKPGAPFAE 358

Query: 483 IAATCSR-------YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           +     +        YNE +  +   AI      E ++ +    L    V++ S  PL +
Sbjct: 359 LLRIGVKSKQFPMGRYNEEEWIERRLAIHR----ENRTSETEQHLSGGRVIKASDRPLAD 414

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-- 593
              +   V+VT+       L+   +A   A + K  F+  +S+ELR+PLT I+G   L  
Sbjct: 415 GSYVGLRVDVTE-------LSHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSR 467

Query: 594 -----------LKTSKLGS---------LNSKQSQY---VEYISASSTILLNLVNDILDL 630
                      LK  + G          L+    Q    +  +  S   LL+L+N+ILD+
Sbjct: 468 NARMLSSSKALLKGYEDGEIGHAEAKRLLDEMYDQLSGLMNRLVQSGEHLLHLINEILDV 527

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A +++G + +  S   + D+++ V + + T   +  +   V+ +  +    AD+ R  QI
Sbjct: 528 AKIESGSLVIEPSPCAVQDIVDPVIEQLRTLSSKKGLAFDVVQEADM--VFADKVRARQI 585

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              ++ NA+ F+  G  V L          F V ++G+ IPE   +S+F  F        
Sbjct: 586 LFNLIGNAIKFTDTG-FVRLVVKPVGDVVSFEVHDSGAGIPEAELQSIFEVFYQVDSTAT 644

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RR  G G+GL+I  S   + GG +S+SS     +     +P +
Sbjct: 645 RRAGGTGMGLAISRSLAEMQGGSLSVSSVVGQGSCFILTLPIR 687



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 16/250 (6%)

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
           F    ++ M+ +              +  + ++      L   G     + VS+     +
Sbjct: 253 FDFSFEEWMLEARTKGG---WPKHAPDQWSKRALIASAGLMLLGTLLYVLQVSERRKRAE 309

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
            L  +   +  L     +FD    L   N  + E++E+    L       ELL     + 
Sbjct: 310 VLLSSG--IEALNDGFVMFDAQDRLLLSNSKYKEMYELPSEVLKPGAPFAELLRIGVKSK 367

Query: 364 KLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           + P  + N + W E   ++++ + T +   HL  G+ +         G  + +  ++T  
Sbjct: 368 QFPMGRYNEEEWIERRLAIHRENRTSETEQHLSGGRVIKASDRPLADGSYVGLRVDVTEL 427

Query: 423 VDLETKYNTLVKVQGETIDHLSE----------GVAVFGPDGRIKLSNPAFRSLWKTEEN 472
              +       K + + +  LS           GVA    + R+  S+ A    ++  E 
Sbjct: 428 SHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSRNARMLSSSKALLKGYEDGEI 487

Query: 473 RLSPGTHIRN 482
             +    + +
Sbjct: 488 GHAEAKRLLD 497


>gi|114048722|ref|YP_739272.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890164|gb|ABI44215.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1118

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/510 (17%), Positives = 200/510 (39%), Gaps = 37/510 (7%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
                     +++     I   D    +   N++   +     A L        + E +R
Sbjct: 274 AKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSPAELLGENVKKIVPESIR 333

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFE 417
             +         T +  I    +  E      H      + + +    +G     +    
Sbjct: 334 PHHDGYLARYINTREAQIIGTGREVEAQHKAGH---SVPVRLSIGHVMQGKAHYFVGFLS 390

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVA-----------VFGPDGRIKLS-NPAFRS 465
           +L+++ ++E +           I ++  G+A           VF  +  + ++  PA   
Sbjct: 391 DLSLRNEMEQELKNNEAKFRSLITNIP-GIAYRCKSTEGWPMVFISEAVLNITGYPAEDF 449

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                +   S   +  +I +  ++    +   +    II +  + R   +    +L ++ 
Sbjct: 450 ELPHPKRFFSDLYYPDDIESIYAQAQPPTFSMEY--RIIRADGEVRWLFEHGNYILDETS 507

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E  I            +++T+    E+ L        +A   + +F+ ++S+E+R+P+ 
Sbjct: 508 NEVWIDGF--------LMDITERKVMEQDLVTAKNNAEQAAAARAAFLANMSHEIRTPMN 559

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIGF+D+L  S    L+++Q + +  I+ S+  L++L+ND+LD A +D G ++L     
Sbjct: 560 AIIGFSDILLESV---LDNEQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKLELENRVF 616

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
            L D ++ V  ++  +  +  + ++V     + + F+   +R+ Q+   ++ NA+ F+ +
Sbjct: 617 CLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGNAVKFTCE 676

Query: 705 GSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
           G  V +     N + + F + + G  +  +    VF  F         +  G GLG +I 
Sbjct: 677 G-KVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTGLGTTIS 735

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  + L GG +   S+    +T    IP +
Sbjct: 736 KQLVELMGGQLEAESTLGQGSTFRFTIPLQ 765



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 16/180 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +   +    DL     +        ++   +G+      G I   N A  ++     
Sbjct: 257 LVLIVNVIFKYKDLSLLAKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSP 316

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L  G +++ I     R +++                  + ++   +      +  SI 
Sbjct: 317 AELL-GENVKKIVPESIRPHHDGYLARYINTREAQIIGTGREVEAQHKAGHSVPVRLSI- 374

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                  M    +      ++ +L  + E   K +E K           RS +TNI G  
Sbjct: 375 ----GHVMQGKAHYFVGFLSDLSLRNEMEQELKNNEAK----------FRSLITNIPGIA 420


>gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 883

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 20/260 (7%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                 + + E  +    A++ K++F+ ++S+ELR+PL  I+GF+ LL   +  +L  +Q
Sbjct: 363 QQAELLKQVRESRDKAEAANKAKSAFLANMSHELRTPLNAILGFSQLLARDE--NLTLEQ 420

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  I+ S + LL+L+ND+LD++ ++AG + LN     L  LL+ +++  A K     
Sbjct: 421 KQTLNTINRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSKG 480

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--------NG 717
           + + +    +L      D  RL Q+   +L+NA+ F+  GS V L+            N 
Sbjct: 481 LVLNIQKSSQLPSHIRVDESRLRQVLINLLTNALKFTDVGS-VTLRVFTQPLPAPFSLNQ 539

Query: 718 D-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           +         F V++ G  I  +    +F  F+  +  R    G GLGL+I   FI+L  
Sbjct: 540 ETLQPSLSLCFDVEDTGIGIANNELDHIFEAFIQTSSGRRSHEGTGLGLAICHHFIHLME 599

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + I S     TT++ +IP
Sbjct: 600 GDIQIQSQLGQGTTVSVQIP 619


>gi|110598715|ref|ZP_01386978.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339660|gb|EAT58172.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 604

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 173/396 (43%), Gaps = 30/396 (7%)

Query: 400 LHVIVTSNPRGGTIW-MFENL--TVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPD 453
           L +  TSN   G +   F ++  T++   +T  +TL++ +    E    L   +AV   +
Sbjct: 226 LVLDTTSNDEIGQLSRSFNDMAATLRKMRKTDMDTLLRTRSATQEVFKALPVPIAVLDQN 285

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G I++S  +  + +      L PG ++ ++         ++     +           + 
Sbjct: 286 GEIEVSTESAENYFG-----LKPGVNVHDLGHEWMTELLQNKEKQEYGGDTLGNKRYIQH 340

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             G  E    S      +P+P    ++            R +T+  E L    E+K S +
Sbjct: 341 FAGNRE----SFFLPQAVPVPAGTALIL-----------RDVTQIIEQL----ELKRSVI 381

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             VS++LR+PLT++     LL   ++G+LNSKQ++ +      S  L ++++D+LDL  +
Sbjct: 382 ATVSHQLRTPLTSLRMSIYLLLEERIGTLNSKQAELLLAAREESERLSHILDDLLDLNRI 441

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G   LN        L  E       +  +  + +       +   +AD +R+  +F+ 
Sbjct: 442 ESGKAHLNIQPASPFRLATEGVDPFTAEARDKRVNLVNTVPEGVSEVMADPERIRHVFAN 501

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +LSNA+ F+    ++ + A  D  +  FSV N+G  I  +  + +F +F     +    G
Sbjct: 502 LLSNALRFTPPDGSITVSACEDEDNVRFSVANSGEGIASEHLEHLFEQFYRVPGQRDESG 561

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +GLGLSIV+  +  HGG V   S+    +     +P
Sbjct: 562 IGLGLSIVKEIVEAHGGTVGAESNPGTGSIFYFTLP 597


>gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
 gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
          Length = 916

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/260 (25%), Positives = 127/260 (48%), Gaps = 12/260 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     N+         L   N+   +++ +K  F+ ++S+E+R+PL  I+G+T LL+  
Sbjct: 258 TEDMRRNMDSMEEKSAQLHIANKETSESNRLKTQFLANMSHEVRTPLNAILGYTQLLQKD 317

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K   L+++Q  Y+  I  S+  LL ++ DILD + ++AG + L  S + + +L+++V Q 
Sbjct: 318 K---LDNQQRLYINTIEQSTNNLLAIIGDILDFSKIEAGKLNLEQSEVNIRELIDDVYQI 374

Query: 658 IATKM--HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG---STVILK 711
           ++  +  H+  + +      ++    + D  R+ QI + ++ NA+ F+  G   + V L+
Sbjct: 375 LSANLLTHKKPVDLIPEVANEVPEWLIGDAIRIRQILTNLIGNAIKFTHDGFVRTKVTLE 434

Query: 712 AARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             R+     +  V + G  IPE+   S+F  F        R   G GLGL I +  +   
Sbjct: 435 QQRNGQPRLLVQVIDTGIGIPENKLNSLFKAFSQVNTSTTRQFGGTGLGLVITKKLVEQM 494

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + ++S     +    RI
Sbjct: 495 GGEIEVNSESGVGSNFRFRI 514


>gi|162448894|ref|YP_001611261.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159476|emb|CAN90781.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 918

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 130/707 (18%), Positives = 230/707 (32%), Gaps = 92/707 (13%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSL----DFLVWHRDQAGDILWANIS---- 221
           S+  + +E+     + ++L       + L D+L       +   D  G ++  N +    
Sbjct: 66  SVPPVDTEIEALRREVERLRVITQHERGLLDALLSESPHGIIVSDIQGKLILQNRASERI 125

Query: 222 YKKNTETEGIVFQ---KAIGESRKLFKEEIKKRMISSSALEKNFCETVS-TLEHGNNKSY 277
           +  ++  E +      +A     + F+          S  E    E +      G +   
Sbjct: 126 WAGSSTAENVEGWGRYRAFHPDGRPFEGGDWSMARCLSRRETVPAEEIHFQRFDGTHGML 185

Query: 278 -----KIVRVLNS-FGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
                 +        G   I  D+++    E  +    T     L ++  A+   D    
Sbjct: 186 LGSCAPLFSPEGEMLGAVSIFADITQFKQLEADLRVSKTKFSTTLKSIGDAVISTDGTGR 245

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           + F N     L    L        +D             +    +  +         +  
Sbjct: 246 IDFMNAVAETLTGWTLDEAKDRRLSDVFRIISEQTRHDLDNPVTEVLRHGGIIGLDDT-- 303

Query: 388 HKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTV-QVDLETKY---------- 429
                   +G  L +     P         G + +F ++T  ++  + +Y          
Sbjct: 304 --TLLLRKDGSELAIDSNGAPIRSEEGELVGLVLVFRDVTEKRLADKRRYFIGEASRQLA 361

Query: 430 -------NTLVKVQGETIDHLSEGVAV--FGPDGRI--------KLSNPAFRSLWKTEEN 472
                  +TL  V    + H+++   V    PDG +          +  A          
Sbjct: 362 LSGLDYESTLANVARLAVPHIADATVVDIVEPDGSLGRLAAVHASDTKKALGRDLPARYP 421

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-----LELLSD-SVL 526
                    +    C       +   +      S     +   G      L LL +  V 
Sbjct: 422 TDPEVPRAVHAVLRCGESLLLPEVEGMAWQRAASLKPGNECWSGAHDPAYLALLRELGVR 481

Query: 527 EYSIIPLPNAQTML-----------TFVNVTDSVRAER-----ALTEKNEALRKA----D 566
              I+PL                      V D   AE      AL   N  L +     +
Sbjct: 482 SAMIVPLRARDRTRGAITLLSTEPSRRYTVEDLALAEELCNFAALALDNAQLYRESQQVN 541

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+  +S+ELR+PLT I+G+  +L+   L        + +E I  + T+   LV D
Sbjct: 542 RAKDEFLATLSHELRTPLTAILGWARMLRQGSLKPDT--HVRALEAIERNGTLQAQLVED 599

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD + +  G ++L+   + L  ++N    ++        I + V  D   G    D+ R
Sbjct: 600 LLDASRIITGKLRLDVMLVDLPPIINAAIDAVRHGADAKGIELLVQLDPNAGPISGDQTR 659

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   +LSNA+ F+ +G  V ++  R  G     V + G  I  +    VF+RF    
Sbjct: 660 LQQVVWNLLSNAIKFTPRGGKVSIQLGRAEGLARIQVSDTGQGIVPEFLPYVFDRFRQAD 719

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
               R   G+GLGL+I    I LHGG V   S+ D    T    IP 
Sbjct: 720 STSTRPHSGLGLGLAIARHLIELHGGTVKAESAGDGKGATFTVDIPL 766


>gi|323497303|ref|ZP_08102322.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sinaloensis
           DSM 21326]
 gi|323317660|gb|EGA70652.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sinaloensis
           DSM 21326]
          Length = 851

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/390 (24%), Positives = 160/390 (41%), Gaps = 30/390 (7%)

Query: 410 GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLW 467
           G  I  F  +    +L   + N   K   +  +     V ++  D  ++   NPA     
Sbjct: 331 GSAIEEFNQIGDSFELSFKRLNEQEKQFADLFNFSLSPVTLWSTDQAKLIRYNPAA---- 386

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              E           +    S +            + T+ D +      +  ++SD+   
Sbjct: 387 ---ERCFKSDVSREQLVEALSSHVKMCAQGATLTGVNTTIDGKTYRWNLS-PIVSDNT-- 440

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                    Q M    ++T  V AER      E   ++  ++  F+  +S+ELR+PL  I
Sbjct: 441 -------TKQIMAQGQDITSFVEAERQSQAAKEEAEESARVRADFLAKMSHELRTPLNGI 493

Query: 588 IGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +G + LLK     SL+ + + ++VE +  S   LL ++NDILD + ++ G   +  +   
Sbjct: 494 LGVSQLLKH----SLDERDALEHVEVLCNSGEHLLAVLNDILDFSKIEQGKFHIQCAEFR 549

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG 705
           L +L   V++       E  I + + SD     +  +D+ RL QI   ++SNA+ F+  G
Sbjct: 550 LIELETTVEKIFRPLCIEKGINLDMQSDVTEKMWANSDQVRLNQILFNLVSNAIKFTHHG 609

Query: 706 S-TVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             TV L     +G      SV + G  I +    ++F  F+       R   G GLGL+I
Sbjct: 610 HVTVSLSCYPQDGRYQLRMSVTDTGIGISDAQLATIFEPFIQAEATTTREYGGSGLGLAI 669

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
           V S   L  G V+I S  +  T I+  +P 
Sbjct: 670 VHSLAELMNGEVTIESQLDKGTRISATLPL 699


>gi|317152599|ref|YP_004120647.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942850|gb|ADU61901.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 876

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 135/870 (15%), Positives = 291/870 (33%), Gaps = 145/870 (16%)

Query: 46  RQRNSLAKKVNETYSFLSEI---------CDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           R R  L  ++    + L  +              +Y  ++     +    D +     + 
Sbjct: 18  RTRKELIAELAALRACLGAVLTPGQPPVSDPDGERYRQMVDGLPQIVYEMDLEGRFVYVN 77

Query: 97  G-QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK-LRKEG-------------QSF 141
              L +     Q     L     L      +      + LR  G              SF
Sbjct: 78  AFALKRFGFTAQDVATGLYLHQILHPDSIGRARAGMARTLRGTGANGEEYIAVCKDGTSF 137

Query: 142 DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDS 201
            +   +Q    +  +G  +G           G+  ++ +T    + L    + ++ +F+ 
Sbjct: 138 PIKVYSQG---VFSDGHATGVR---------GVVIDITDTKRAEEALYQSENYYRTIFEH 185

Query: 202 LDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQK-----AIGESRKLFKEEIKKRMIS 254
               +        +   N  ++  T    + IV +K        E  +  +   ++R + 
Sbjct: 186 TGTAMIIFGADAVVHRCNSQFETLTGYTADEIVNRKTWDIFVAPEDLERVRGFNRQRRMQ 245

Query: 255 SSALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
             ++  ++  T+ T + G+ K     +  +  +       ID++        L  + +  
Sbjct: 246 DPSVPSDYEMTILT-KDGDRKLAHLFVQAIPRTDDMVCSLIDITARHRTERALRDSEKRY 304

Query: 313 H----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
                     I  +D      F++  + E+   + A      ++D     +   +  P  
Sbjct: 305 ELVARGANDGIWDWDLQTDTIFYSARYREMLGYEEAEFPN--TSDSWKNAIHPDDLEPIL 362

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT---SNPRGGTIW----MFENLTV 421
              +T  E     ++     +      +G    V+     +    G ++       ++T 
Sbjct: 363 AANRTCTEGGTDQFE----VEYRLRHKDGTYRWVLGRGASARDERGEVYRLAGTHTDITE 418

Query: 422 QV--------------------DLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLS- 459
           +                     +L+  Y T+  + G+ ID  +  +A++   G R+  + 
Sbjct: 419 RKLSERTTQAMYAISKAISTTDNLQALYETIHAILGQVIDATNFFIALYDEPGDRVAFAY 478

Query: 460 ------------NPAFRSLWKTEENRLSPGTHI-------------RNI------AATCS 488
                       N +  +      + L  G  +             RNI      AA   
Sbjct: 479 FADDKDELYDIRNVSDPNTRGLTVHILRTGRPLFISQADPIPPENARNIGIVGTPAAVWL 538

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVL--------EYSIIPLPNAQ 537
               +  G  + A  +  + + R         LE +S+ V         E  +       
Sbjct: 539 GVPLKLKGRTMGAMAVQHYTNPRHYTDADVSFLEAVSEQVALAIERKSNEEELTRFSEDL 598

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL---- 593
             +  +  T+       L   N+ L + D IK++ V  +S+ELR+PLT+I GF  L    
Sbjct: 599 EDMVELRTTELQVQASELESANQRLTELDTIKSALVSSISHELRTPLTSIRGFAKLTRKE 658

Query: 594 -------LKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
                  L  S L      +  Q +  I      L  L+ND LD+  +++G +  N   +
Sbjct: 659 FVRHFLPLAESPLAEAKGERIRQNLGIIETEGERLTRLINDFLDINRIESGKVVWNDQFL 718

Query: 646 VLNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              +++++   ++A  +     I++K+     +    AD  ++ Q+   +L+NA  F+++
Sbjct: 719 NPCEVVHQAANALAGALAARPAIKLKLSLPPTVPLIHADPDKVQQVLINLLNNACKFTAE 778

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ----RRGVGLGLSI 760
           G  + +    +      +V + G  I  +   ++F +F             RG GLGLSI
Sbjct: 779 G-FIKISVTGNVDSLTITVSDTGMGIGPEDQPNIFEKFYKARAGDTLVAEARGTGLGLSI 837

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +  +  +GG + + S+    +  +  +PS
Sbjct: 838 CKEIVEHYGGSIWVDSTLGQGSAFSFTLPS 867


>gi|288933363|ref|YP_003437422.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288888092|gb|ADC56410.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 779

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 23/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K     ++Q           +D   + V     D      N A   L    E 
Sbjct: 134 EQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 193

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 194 QLIHLKPQDVYSGEAAEKVLETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 248

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 249 YYDRVGKRRGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++   L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 307 ILLDTE---LTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLA 363

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++
Sbjct: 364 DLENLSGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVR 423

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD + F V+++G  IPE     +F  +         +   G G+GL++       
Sbjct: 424 VRYDEGDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARN 483

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG +S++S      T    
Sbjct: 484 MGGDISVTSQPGKGATFTLT 503



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +L+ +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T  
Sbjct: 131 TTLEQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGK 190

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV- 280
                Q    + + ++  E  ++++ +   EK F   VS           G    ++I  
Sbjct: 191 S--EKQLIHLKPQDVYSGEAAEKVLETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRK 246

Query: 281 -----RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                RV    G  G   D+++     D L  
Sbjct: 247 VPYYDRVGKRRGLMGFGRDITERKRYQDALER 278


>gi|229917934|ref|YP_002886580.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469363|gb|ACQ71135.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 613

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 152/380 (40%), Gaps = 26/380 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ L  +     K   + I+ + E +     +    + N AF  ++            + 
Sbjct: 247 RMQLYRQMQQDRKETAQLINSVREAILYVNYEDDTVVGNRAFIRMFDDLHFDYKGYEELS 306

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I     +     D  + F         +     G         L  SI      Q    
Sbjct: 307 AIDIDIEQLAERVDQHEQFVRYFERVFTQDPPEDG---------LTISI-----DQGDCF 352

Query: 542 FVNVTDSVRAERALTEKNEALR------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                +SV  +R L      LR      + D +K+  V  VS+ELR+PL++I GFT+L+ 
Sbjct: 353 IQLYAESVYRDRKLRGTMLVLRDVTAETEIDRMKSELVSTVSHELRTPLSSIYGFTELML 412

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           +  L    S++  Y++ I   +  L  LVND LDL  +++G     +  + L  L+ +  
Sbjct: 413 SRDLK--ESRRELYLKTIHDEAKRLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSV 470

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                    + + I   ++       AD + + Q+   +LSNA+ +S  G  +++   R 
Sbjct: 471 AFYQETTDRHELFIDADTEQDFI-IDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERV 529

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           + + +  V+++G  IP      +F +F    +  +R   G GLGL+I +     H G + 
Sbjct: 530 DEEVVMKVRDHGMGIPSASLPHLFGKFYRVDNSDRRKIGGTGLGLAICKEIAKAHEGQLH 589

Query: 774 ISSSDEGVTTINCRIP-SKE 792
           + S     +T  C +P SKE
Sbjct: 590 VESVYGEGSTFICELPTSKE 609


>gi|310659191|ref|YP_003936912.1| sensor protein [Clostridium sticklandii DSM 519]
 gi|308825969|emb|CBH22007.1| Sensor protein [Clostridium sticklandii]
          Length = 427

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 144/366 (39%), Gaps = 23/366 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                        +  +S G+     +  + L N A ++++   E     G     I   
Sbjct: 76  ETLKDRNSKLKAILKSISNGIVAIDKEQNVLLMNKAAKNIFDYHETD-YEGRPFEMIVKD 134

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                       L   I+  F    ++         D  +    I L +   ++    V 
Sbjct: 135 ----------QRLLLCILDLFHKRERAHTQLHLGTVDYKINVDPIRLDDNDKIVIGAIVN 184

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                ER          K + I++ FV +V++EL++PLT+I GF + LK++  G   + +
Sbjct: 185 IEDITER---------IKLETIRSDFVANVTHELKTPLTSINGFVETLKSNA-GINKAMR 234

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +++++ I   S  L  L++DIL L+ ++      +   +   D +NE    ++  + + N
Sbjct: 235 TKFLDIIEVESNRLQRLIDDILILSFIEGNKSHYSNEPVNFADTINECINLVSETIKDKN 294

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + I            ++   + Q+   ++ NA+ +S +   V L    D+   +FSV+++
Sbjct: 295 VTIDFSPIDNQIYLKSNPDLMKQLILNLIDNAIKYSKEEGFVRLTLLEDSKKVLFSVEDD 354

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +    +F RF         +  G GLGL+IV+  +    G++ + S     +  
Sbjct: 355 GIGIPSEDIDRIFERFYRVDKARSKKVGGTGLGLAIVKHIVLNLNGNIKVHSELNKGSKF 414

Query: 785 NCRIPS 790
               P 
Sbjct: 415 IIEFPK 420



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            T+ D+ +    IL +++  I   D+ + +   N++   +++         P    + + 
Sbjct: 76  ETLKDRNSKLKAILKSISNGIVAIDKEQNVLLMNKAAKNIFDYHETDYEGRPFEMIVKD- 134

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
                 L   L+    +E   +            +  N   + +        G I   E+
Sbjct: 135 ---QRLLLCILDLFHKRERAHTQLHLG----TVDYKINVDPIRLDDNDKIVIGAIVNIED 187

Query: 419 LTVQVDLET 427
           +T ++ LET
Sbjct: 188 ITERIKLET 196


>gi|300788622|ref|YP_003768913.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299798136|gb|ADJ48511.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1546

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 139/305 (45%), Gaps = 17/305 (5%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             A  + +  ++ ++ QG L   +  + E +   L   Q     V  ++  +A + L E+ 
Sbjct: 1070 LAQELRARSEQLQAQQGELRRSNTELAEKAA--LLAQQNRDIEVKNSEIEQARQELEERA 1127

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              L  A + K  F+ ++S+ELR+PL + +    LL  +  G+L  KQ Q+ + I A+ + 
Sbjct: 1128 GQLTVASQYKTEFMANMSHELRTPLNSALILAKLLSENPEGNLTEKQIQFAKTIYAAGSD 1187

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            L  L+NDILDLA V+AG + +  S I L +L++ V+        +  +   V  D  +  
Sbjct: 1188 LQQLINDILDLAKVEAGRLDMQMSDITLPELVDYVESLCRPLTADKGLEFAVHIDPPVPG 1247

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI------------FSVKNN 726
            S   D  RL QI   +LSNA  F+ +G   +   + D  +              F+V++ 
Sbjct: 1248 SVHTDEHRLQQILRNLLSNAAKFTDEGGVRLHIRSADPAEVEQEALRNAPGIIAFAVEDT 1307

Query: 727  GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IPE+    +F  F         +  G GLGL+I +    L GG + + S     +T 
Sbjct: 1308 GIGIPEEKLAVIFEAFRQADGTTSRKYGGTGLGLNISQQLTELLGGELRVVSEPGVGSTF 1367

Query: 785  NCRIP 789
               +P
Sbjct: 1368 TLYLP 1372


>gi|330829872|ref|YP_004392824.1| response regulator receiver [Aeromonas veronii B565]
 gi|328805008|gb|AEB50207.1| Response regulator receiver [Aeromonas veronii B565]
          Length = 608

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 168/382 (43%), Gaps = 29/382 (7%)

Query: 425 LETKYNTLVKVQGETIDHLSEGV--------AVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           LE+K  +L++ Q E     S+ +           GP+    L N A + L +   + L  
Sbjct: 88  LESKDRSLLQ-QTEIYQQASKAIRSYISLADIWLGPEATKPLDNLAHQELRQQLASLLPQ 146

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +       +  ++ +    +   IIT+      +L  TL+     VL   I      
Sbjct: 147 LHQLTLEVNQQATLFDVARRDSVREQIITT------TLIATLQFALLFVLALLI----WR 196

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  ++F+      +    L   N+A       K+SF+ ++S+E+R+P+  I+G   LL  
Sbjct: 197 QMNISFLQHKLMQQLNDKLLRANQAAEAGTRAKSSFLANMSHEIRTPMNGILGMLSLLAD 256

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                ++ ++  Y+E    S+  LL L+NDILD++ ++ G ++L  +   L  LL +++ 
Sbjct: 257 R---DMDPRERDYLETARESANHLLGLLNDILDVSKLEEGKIELQLAPHHLPQLLEDIRA 313

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILK--- 711
            + +      I++ + ++       + D  R+ QI   ++SNA+ F+ +G   + +    
Sbjct: 314 LMQSNCDAKGIKLTLTVAPDTPEWLMIDPLRVRQILFNLVSNAIKFTHQGEVNIRVDSTL 373

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
             +D      S+++ G  + +   K++F RF         Q  G GLGL I  +   L G
Sbjct: 374 LEQDRHSIRISIQDTGIGMSKSQLKNLFQRFAQADVSITRQYGGSGLGLEISRNLARLMG 433

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +S+ SS+   +T     P++
Sbjct: 434 GDISVESSEGHGSTFTYIWPAR 455


>gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24]
 gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1829

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 128/278 (46%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1334 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1393

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L  KQ ++ E I  + + LL L+NDILDL+ VDAG M ++ + I L  L++ V+ 
Sbjct: 1394 NADANLTPKQVEFAETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEA 1453

Query: 657  SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +      E  + + V +S G   +   D QRLLQ+   +LSNA+ F+  GS  ++++ AR
Sbjct: 1454 TFRPLSAEKGLDLSVRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPAR 1513

Query: 715  DN--------------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
            D                         FSV + G  I     + +F  F         +  
Sbjct: 1514 DEVPTAIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYG 1573

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +   S     +T    +P 
Sbjct: 1574 GTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1611


>gi|261407834|ref|YP_003244075.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261284297|gb|ACX66268.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 893

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L +  + L K+ + K+ F+ ++S+ELR+PL +++  + +L  +K G+L  ++  Y 
Sbjct: 479 AASELEKYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQHYA 538

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S + LLNL+NDILDL+ V+AG M++    + L +L   ++   +      N+   
Sbjct: 539 TVIHNSGSELLNLINDILDLSKVEAGKMQIEMDLVNLTELPELMEGYFSKSAESKNLEFD 598

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST----------VILKAARDNGDF 719
           +     L     +D  RL QI   +LSNA+ F+  GS           V           
Sbjct: 599 IEVADDLPDMMYSDGMRLHQILRNLLSNAIKFTESGSVKLKVKKMNSIVTSDFIISGDVI 658

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            FSV++ G  I  +  + +F  F        RR  G GLGLSI      L GG++++ S 
Sbjct: 659 AFSVEDTGIGIAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITVESE 718

Query: 778 DEGVTTINCRIPS 790
           +   +T    +P 
Sbjct: 719 EGIGSTFILYLPL 731


>gi|75910975|ref|YP_325271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704700|gb|ABA24376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1195

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 130/261 (49%), Gaps = 9/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q         +  +A + + EK E L  + + K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 496 QNSEVARKNQEIEKARKFIEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLAD 555

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G+L++KQ +Y + I ++ T LL L+NDILDLA +++G + +    I   DL + +++
Sbjct: 556 NSSGNLSNKQVEYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIER 615

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +      +  +   +  D +L  +  +D +RL QI   +L+NA+ F+ +G  V L+   D
Sbjct: 616 TFRQVAQDKGLSFSIELDERLPSTIFSDPKRLQQILKNLLANALKFTEEGG-VTLRIGLD 674

Query: 716 -----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
                +    F++ + G  IP++  + +F  F         +  G GLGLSI      + 
Sbjct: 675 QINTNHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELTQML 734

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG + + S     +     +P
Sbjct: 735 GGRLGLVSQPGQGSIFTLYLP 755


>gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)]
 gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)]
          Length = 1829

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 128/278 (46%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1334 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1393

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L  KQ ++ E I  + + LL L+NDILDL+ VDAG M ++ + I L  L++ V+ 
Sbjct: 1394 NADANLTPKQVEFAETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEA 1453

Query: 657  SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +      E  + + V +S G   +   D QRLLQ+   +LSNA+ F+  GS  ++++ AR
Sbjct: 1454 TFRPLSAEKGLDLSVRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPAR 1513

Query: 715  DN--------------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
            D                         FSV + G  I     + +F  F         +  
Sbjct: 1514 DEVPTAIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYG 1573

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +   S     +T    +P 
Sbjct: 1574 GTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1611


>gi|183219921|ref|YP_001837917.1| sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910045|ref|YP_001961600.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774721|gb|ABZ93022.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778343|gb|ABZ96641.1| Putative sensor protein with PAS domain [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 504

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 196/491 (39%), Gaps = 41/491 (8%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN--PSNDELLEFLRSAN 363
            +  +IL   T A+ + D++    + N   VE+       L      +   +L+ +   N
Sbjct: 35  QYFDKILETRTNAVYVLDKDGNYTYVNAKAVEMAGKSAEELLGQNIWNLFPVLQTIEFGN 94

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG-TIWMFENLTVQ 422
           +L E +  K         ++S ET+ +T    + Q         P+   TI +   +T  
Sbjct: 95  QLSEAIKEKK-------TFRSEETYFETLGWYDMQVF-------PQENFTIIIATEVTHT 140

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN--PAFRSLWKTEENRLSPGTHI 480
            + + +Y+ ++      ++ L + +     +G+       P F       +      + I
Sbjct: 141 KNAKDEYSQIITKNKTILNALPDLLYGIHRNGQAINHKEFPHFTGWDCKNKETNLCYSDI 200

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           + I                        ++ +  L+  ++L     +EYSI      +   
Sbjct: 201 KEIFPENK------------------LEEIQTILRQVIDLGVSKAVEYSIHDADGEKCFE 242

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                T  V A   +    E  +KA+ +KN F+  VS+ELR+PLT+I G  DLL     G
Sbjct: 243 ARFTKTGEVDALAIIRNITER-KKAEALKNEFISLVSHELRTPLTSIKGSIDLLLAGVAG 301

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            ++++    +     ++  L+  V D+LD+  +D+G +   + T  L ++L      + T
Sbjct: 302 EVSNQTKSLLNICRKNTQRLVRFVTDLLDIEALDSGNINFKFRTYQLKEILQTSVDGMRT 361

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              + ++ +   S+    S   D  RL    + ++SNA+ ++ K S V +    D     
Sbjct: 362 FAEQYHVLLNFDSNFPQTSVYVDEDRLNHCITNLISNAVKYTPKFSEVTISVQTDATKAK 421

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             +++NG  I  +    +F+RF   A    +   G GLGLSI + F+    G +   S D
Sbjct: 422 IQIRDNGPGIDPNFAPRLFHRFAQGAPPKDKLVGGSGLGLSITKGFVEAMNGKIYFFS-D 480

Query: 779 EGVTTINCRIP 789
           +  T     +P
Sbjct: 481 DSGTVFTIELP 491



 Score = 44.2 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 90/276 (32%), Gaps = 34/276 (12%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK-LFK----EEIK 249
           F  + ++    V+  D+ G+  + N    K  E  G   ++ +G++   LF      E  
Sbjct: 37  FDKILETRTNAVYVLDKDGNYTYVNA---KAVEMAGKSAEELLGQNIWNLFPVLQTIEFG 93

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT- 308
            ++  +   +K F    +  E      Y +           IA +V+      D+ +   
Sbjct: 94  NQLSEAIKEKKTFRSEETYFE--TLGWYDMQVFPQENFTIIIATEVTHTKNAKDEYSQII 151

Query: 309 ---YEILHNLTVAIAIFDQNRYLQFHNRS-FVELWEIDLAFLATNPSNDELLEFLRSANK 364
                IL+ L     ++  +R  Q  N   F      D     TN    ++ E       
Sbjct: 152 TKNKTILNALPD--LLYGIHRNGQAINHKEFPHFTGWDCKNKETNLCYSDIKEIFPENKL 209

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-QTLHVIVTSNPRGGTIWMFENLTVQV 423
             E++     +     V K+ E    + H  +G +      T       + +  N+T + 
Sbjct: 210 --EEIQTILRQVIDLGVSKAVE---YSIHDADGEKCFEARFTKTGEVDALAIIRNITERK 264

Query: 424 DLET-----------KYNTLVKVQGETIDHLSEGVA 448
             E            +  T +     +ID L  GVA
Sbjct: 265 KAEALKNEFISLVSHELRTPLTSIKGSIDLLLAGVA 300


>gi|46199084|ref|YP_004751.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
 gi|46196708|gb|AAS81124.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
          Length = 963

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 93/434 (21%), Positives = 172/434 (39%), Gaps = 33/434 (7%)

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           LRSA  +P     + +K  +   Y+        W    G+   V        G +     
Sbjct: 554 LRSALVIP--FRAQGFKGGLLLGYRRPRRWASGWE---GRLAQV--------GLLLAL-- 598

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +  L        +     ++H  + V V   + RI+  +P+  ++   +        
Sbjct: 599 VLEKARLLAYLEAEEERLRALLEHSQDVVYVLDEEARIRFVSPSVGAVLGYDPEG----- 653

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             R  A     + +  D     A           +L+G   LL          P+P    
Sbjct: 654 -YRRAALDALAFVHPEDQERARALFQELLARPEATLRGEFRLLHQD-----GTPIPVEAW 707

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +           + +    L +A+ +K  F+  VS+ELR+PL  I+G  +LL+   
Sbjct: 708 GRNLLKDPRVGGVVVNVRDLRPRL-EAERLKGEFLAAVSHELRTPLAAILGLAELLRQE- 765

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +  + VE I  S+  L N+V+++LD + ++AG  +++   + L  LL E+ +S 
Sbjct: 766 --PLPPEAQESVELILESAFRLKNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSF 823

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                 + +  +V  + +L     D  R++Q+   +L+NA  F+  G +V L A     +
Sbjct: 824 QGVARLSGVEFRVEVE-ELPLMEVDPDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEE 882

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V++ G  IP++    +F R+    H G R   G GLGL I +  +  HGG + + S
Sbjct: 883 VWVEVQDTGPGIPKEEIPRLFQRYARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVES 942

Query: 777 SDEGVTTINCRIPS 790
            +   +     +P 
Sbjct: 943 EEGKGSLFRVILPL 956


>gi|21241265|ref|NP_640847.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106582|gb|AAM35383.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 769

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 10/250 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q 
Sbjct: 90  HGELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQR 146

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +
Sbjct: 147 DMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQL 206

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFS 722
           R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      F 
Sbjct: 207 RLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQ 266

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S    
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 781 VTTINCRIPS 790
            +T    IP 
Sbjct: 327 GSTFWFEIPL 336


>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
 gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
          Length = 715

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +T   +   + Q   E    + LE   I   + + +   +   D  +A   L    EA +
Sbjct: 1   MTRSTEPDAAWQKRYERERKARLEAEAIAEKSTRELYERIQ--DLKKAGEELRHAKEAAQ 58

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A   K +F+ ++S+E+R+P+  IIG T+L+  +    L   Q +Y+  +  +   LL+L
Sbjct: 59  AASVAKGNFLANMSHEIRTPMNAIIGMTELVLDT---DLTDTQREYLAMVREAGNSLLSL 115

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +NDILD + ++AG ++L      L + L +  +S+A + H   I +      ++  + + 
Sbjct: 116 LNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFRAHGKGIELACHVHPEVPDALLG 175

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL QI   ++ NA+ F+++G  V+  A      +  +  F+V + G  IP D  +S+
Sbjct: 176 DASRLRQIVVNLVGNAIKFTTQGEVVLDVAYESPTNNAANLHFTVTDTGIGIPTDKLESI 235

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F+ F        R   G GLGL+I    + L GG +   S     +  +  
Sbjct: 236 FDSFEQADMSTTRQFGGTGLGLAISSRLVKLMGGRIWAESELGCGSDFHFT 286


>gi|295402033|ref|ZP_06811994.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975924|gb|EFG51541.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 456

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 136/324 (41%), Gaps = 9/324 (2%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           K           I+N+      ++       +F  IIT     R  +   L  +  +  +
Sbjct: 138 KGYVYMFQNTDSIQNMIDKLKHHFMMVGILSVFLTIITIALLSR-IITIPLIRMKQATEK 196

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S         +     + +  +A + L    E L+K    +N F+  +S+ELR+PLT +
Sbjct: 197 LSKGDFSVHLQVKGEDELAELGKAIQTLARDLEYLKK---ERNEFLASISHELRTPLTYV 253

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G+ D+ +   +G    ++++Y+  I   +  +  LV D+ +LA +D    +++     L
Sbjct: 254 KGYADIARRPNMG--EEERNRYLSIIYEEAEHMQKLVKDLFELAKMDQHSFQIHKELTNL 311

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
                ++   +        + +    DG + +   D++R  Q+   +L NA+ +S +GS 
Sbjct: 312 CSFFKKLHDKMQPAFQAKKMSLVYYCDGSI-TVHIDQKRFEQVMMNLLDNALKYSDQGSI 370

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           V +   ++    +  V + G  IP++    +F RF        R   G GLGL+IV+  +
Sbjct: 371 VSIDVRKEKHHIVIIVSDEGRGIPKEDLPHIFERFYRVDKSRSRTSGGTGLGLAIVKEIV 430

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             HGG +  +S     T +   +P
Sbjct: 431 EAHGGAIYAASEYGKGTNMIITLP 454


>gi|226357739|ref|YP_002787479.1| histidine kinase, classic [Deinococcus deserti VCD115]
 gi|226319982|gb|ACO47975.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 872

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 135/773 (17%), Positives = 261/773 (33%), Gaps = 62/773 (8%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
                 + L R R S A    +  +   E+ +  ++   L T  + L      +D   + 
Sbjct: 143 LAAQCAVALGRARLSGALH-RQVEARTRELEESRARAEVLATLGDALQRAHSPEDVAVQA 201

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           +  L   +         L          + +   A   LR  G      A        K 
Sbjct: 202 LEPLGHTLGASSVMVVQLERGRLHVPTIWGETLPAMAALRTSGTPLKEAALLDRCARTKK 261

Query: 156 EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF------DSLDFLVWHR 209
            G  +   A        G+ + LA      + +                  +  +     
Sbjct: 262 AGYYADYDA------AGGVLTGLATLAFAVEPIHASGDDLVGFLCAWRLPRTEPWPA--- 312

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
               D+L      +++  T G+  ++A+       + E     ++ +       +  + +
Sbjct: 313 -GDRDLL------RRSAGTLGVALERAVTTQALQERTEALDAFVAFTERVAGETDVRALI 365

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT-YEILHNLTVAIAIFDQNRYL 328
           EH       ++R        G                    E +  +             
Sbjct: 366 EHAA----DVLRATLGDLGVGYYEPEDGRWKARAWSNGIPREFVARMQAGF--------- 412

Query: 329 QFHNRSFV-ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           +F    F   + +    F+    S  E L   R    +     ++        V  +   
Sbjct: 413 EFSTPRFAHAIRDQQPHFMQEWNSASEDLPGARRTGAMATYPYFQH--GRPTGVLSAGSM 470

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
               W       +  +  S    G          ++   +++N L       ++ L EGV
Sbjct: 471 QTLGWSEREQAIIRAVGRSL---GLAMEGTRSAAELRRASRFNEL------VLNSLGEGV 521

Query: 448 AVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
                 GR  L+NPA   +     E+ +    H     +         +  +++AA +  
Sbjct: 522 TTIDAQGRSTLANPAALKMLGYTAEDFMGRPQHALIHHSYPDGSPFPREACEIYAAFVDG 581

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEA 561
                       +  S   +EY+  P+ N       ++L F +VT+  RAE  L + N+ 
Sbjct: 582 QVHRANDEVFWRKDGSSFPVEYTSTPILNESGEIEGSVLVFRDVTERQRAEATLRQANDE 641

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           LR+++     F    S++L+ PL  +  F+ LL     G  +++   YV  I+  +  + 
Sbjct: 642 LRRSNAELEQFAYVASHDLQEPLRTVTSFSQLLAKKYAGQTDARGQMYVRLITEGTQRMT 701

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+L  + V  G    +   +    +L +V Q +A ++     ++ +   G++   +
Sbjct: 702 QLLQDLLAFSRVAKGAA--DPVRVNTGVILAQVSQDLAAQIQHTGAQLHI---GEVPDVL 756

Query: 682 ADRQRLLQIFSKILSNAMDFS--SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            D  +L Q+F  ++ NA+ FS   +G  V + A  D G   F V++NG  I  +  + +F
Sbjct: 757 GDASQLRQLFQNLIGNALKFSHPERGPVVWVGAECDGGLVRFRVQDNGVGIAPEYFERIF 816

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             F     R Q  G G+GLSI    +  HGG + + S+    TT    +P+ E
Sbjct: 817 TIFQRLHTREQYEGSGIGLSIARKIVERHGGRIWLESTPALGTTFYFTLPAVE 869


>gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1207

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN+ L+  D++K+ F+ + S+ELR+PL  IIG  D ++    G ++  Q + +  I 
Sbjct: 443 LERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIADSIRDGATGPISELQKKNLSMIV 502

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLVNDILD + +    +KL  S++ + ++   V       +   ++++     
Sbjct: 503 GSGHRLANLVNDILDFSKLRHCSIKLQISSVGMREVTEIVLAFSRMILEGKDLQLINAIS 562

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIFSVKNNGSSIPE 732
             L    AD  R+ QI   ++ NA+ F+  G  V + A     N     +V + G  IPE
Sbjct: 563 SDLPPVEADENRIQQIMHNLVGNAIKFTDSG-VVKVSAELIDVNKKMAITVSDTGIGIPE 621

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           D  +++F  F         Q  G GLGL I +  + LHGG +S+ S+    +     +
Sbjct: 622 DKYEAIFKSFEQGDGSTERQYGGTGLGLPITKKLVELHGGTISVKSTVGIGSEFTFTL 679


>gi|304440637|ref|ZP_07400521.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370824|gb|EFM24446.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 545

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 172/379 (45%), Gaps = 39/379 (10%)

Query: 421 VQVDLE-TKYNTLVKVQGETIDH----LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            + +LE  K  ++ K Q +T++     + EG+ +F    R+ L N +  ++ K       
Sbjct: 199 DEKNLELEKLYSIEKSQNDTVEAILTKMKEGLVIFDRSLRLVLINDSAINILK--PINSK 256

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G+HI  +          ++   +  A+   F  + K ++G +E + + + EY I P   
Sbjct: 257 KGSHILEL----------TNESKILDAVNEGF--KGKYIKGEIE-IDNKIYEYFISPESE 303

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +   +  +    +  A   L             +  F  +V++EL++PLT I GF +LLK
Sbjct: 304 SLGGVALLLTDKTYEAGLKLK------------REEFTSNVTHELKTPLTIISGFAELLK 351

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           +  +     K  ++   I   ST L  L++D+L ++ ++A    +    + L++L +EV 
Sbjct: 352 SGNVE--EEKIKEFGGIIYKQSTNLQRLIDDLLKISKLEANDAVI-IEELSLDELGDEVC 408

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +A ++   N+ +    D          + + +    +L+NA+ ++  G  +  K A++
Sbjct: 409 DDLAIEIKNKNLNLVKDFDRVKAKVNG--EMIKEAMMNLLTNAIKYNRDGGEIEFKIAKE 466

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +G  +  + +NG  I E++   +F RF    N+   +    GLGLSIV+  +  HGG + 
Sbjct: 467 DGFALVQISDNGIGIEEELLDRIFERFYVVDNSRSKKISSTGLGLSIVKHIVEAHGGRIE 526

Query: 774 ISSSDEGVTTINCRIPSKE 792
           ++S     +T    +P ++
Sbjct: 527 VTSEIGKGSTFTIYLPLEK 545


>gi|220906228|ref|YP_002481539.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7425]
 gi|219862839|gb|ACL43178.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7425]
          Length = 2051

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 138/338 (40%), Gaps = 39/338 (11%)

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            EN L+ G   ++          ++      A +    ++   +L+  +   ++  +E   
Sbjct: 1489 ENNLTTGAFTQDRLEVLQLLAAQAAISIENARLYADLEEANHTLEAKV---TERTIEL-- 1543

Query: 531  IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                  + +     + +  RAE A        + A   K+ F+ ++S+ELR+PL  I+G+
Sbjct: 1544 ----EEKNLHLQQEIQERQRAEEA-------AKVASRAKSEFLANMSHELRTPLNGILGY 1592

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +L  +K  +L  +Q   +  I      LL L+ND+LDL+ ++A  M+L  ST  L   
Sbjct: 1593 SQILSKNK--ALTEQQQNGLNVIHQCGEYLLTLINDVLDLSKIEARKMELYPSTFNLPHF 1650

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            L  + +    +  +  I +       L  FV AD +RL Q+   ++ NA+ F+  G  V 
Sbjct: 1651 LENMLEICRIRATQKQISLNYEILSPLPQFVHADEKRLQQVLLNLVGNAIKFTPAG-IVT 1709

Query: 710  LKA------------------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             K                   A       F +++ G  I  +  + +F  F      GQR
Sbjct: 1710 FKVGYVQHWPSAPAEQSSPNQAVAQSKIRFQIEDTGIGISPEQLEQIFQPFHRGGEPGQR 1769

Query: 752  -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGL+I    + L GG + + S     +     +
Sbjct: 1770 TEGTGLGLAISRQLVQLMGGEIQVKSILGQGSLFRLDL 1807


>gi|73661331|ref|YP_300112.1| two-component sensor histidine kinase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123734265|sp|Q4A159|WALK_STAS1 RecName: Full=Sensor protein kinase walK
 gi|72493846|dbj|BAE17167.1| two-component sensor histidine kinase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 610

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 156/399 (39%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 227 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRV 286

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N    ++  T +  +  G H+  +         E    D       SF  +    +G
Sbjct: 287 RIVNDMALTMMGTMKEDI-IGDHMLKVLK-----LEEDFSLDEIQENNDSFLLDINENEG 340

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++     +S I             + D    ++            +  +  FV +V
Sbjct: 341 IIARVN-----FSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 384

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L++           Q++      +  ++ LVND+L L+ +D  
Sbjct: 385 SHELRTPLTSMNSYIEALESGAWKD-GELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 443

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 444 SEQITKEIVDFNMFINKIINRHEMSA--KDTTFVREVPTETIFTEIDPDKMTQVFDNVIT 501

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         VK+NG  IP +    +F+RF        R   
Sbjct: 502 NAMKYSRGDKRVEFHVKQNALYNRMTIRVKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 561

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 562 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 600



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 10/136 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   + +              D +
Sbjct: 254 EAQANTESEKRRLDSVITHMSDGIIATDRRGRVRIVNDMALTMMG--------TMKEDII 305

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            + +    KL E  +    +EN  S       ++      N  T+ V  T     G I +
Sbjct: 306 GDHMLKVLKLEEDFSLDEIQENNDSFLLDINENEGIIARVNFSTI-VQETGF-VTGYIAV 363

Query: 416 FENLTVQVDLETKYNT 431
             ++T Q  +E +   
Sbjct: 364 LHDVTEQQQVERERRE 379


>gi|71735952|ref|YP_274795.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556505|gb|AAZ35716.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 1170

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 388 EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 447

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + + S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 448 TNEQLADQSQA--LADQRDALDRNNEELSIAQAELQARADELQRASKYKSEFLANMSHEL 505

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 506 RTPLNSSLILAKLLAENPGENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEM 565

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 566 RPENSSVSRLVEGLRSMFKPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 625

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +F V+++G  I E+  + +F  F        RR  G GLG
Sbjct: 626 KFTEAGAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 685

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +  +  +P
Sbjct: 686 LSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717


>gi|66045681|ref|YP_235522.1| response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256388|gb|AAY37484.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:CHASE3
           [Pseudomonas syringae pv. syringae B728a]
          Length = 1172

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 160/364 (43%), Gaps = 14/364 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ +++ V           S  A R   + +E           +     
Sbjct: 365 LRALTERDIEFLELVADNVGT---------SIEAARYRQRLQEVLAETQQLNEELQVQQE 415

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + I+       ++ Q  LE  ++ + + S       Q      N  + 
Sbjct: 416 ELRTANEELEEQSRILKESQAHLETQQAELEQTNEQLADQSQALAE--QRDALDRNNEEL 473

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q +
Sbjct: 474 NIAQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK 533

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD++ V+AG +++      ++ L+  ++        E  + 
Sbjct: 534 FAESIYSAGNDLLNLINDILDISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLA 593

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             V    G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++G
Sbjct: 594 FTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSG 653

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  + +F  F        RR  G GLGLSI      L GG +S++S+    +  +
Sbjct: 654 IGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFS 713

Query: 786 CRIP 789
             +P
Sbjct: 714 LVLP 717


>gi|302554553|ref|ZP_07306895.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302472171|gb|EFL35264.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1824

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 154/358 (43%), Gaps = 31/358 (8%)

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              S     + +      I  + AT     + +   +L  A      ++ +     LE   
Sbjct: 1253 LASFTPFTQIQRDFLNQIAEMIATSVNTISVNTKTELLLAQSQELTEQLRERSAELEQRQ 1312

Query: 523  DSVLEYSIIPLPNAQTMLTFVN------VTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             + L+ S   L     +L   N       T+   A + L E+ E L  +   K+ F+ ++
Sbjct: 1313 KA-LQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANM 1371

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+ELR+PL +++    LL  +  G+L+ KQ ++ E I  + + LL L+NDILDL+ V+AG
Sbjct: 1372 SHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAG 1431

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695
             M ++ + I L  L++ V+ +      E  + + V    +L  +   D QRLLQ+   +L
Sbjct: 1432 KMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLL 1491

Query: 696  SNAMDFSSKGST-VILKAARDN--------------------GDFIFSVKNNGSSIPEDM 734
            SNA+ F+  GS  ++++ ARD+                    G   FSV + G  I    
Sbjct: 1492 SNAVKFTDSGSVELVIRPARDDVPQKIREQLLETGSLTDPDAGLIAFSVTDTGIGIASSK 1551

Query: 735  CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +F  F         +  G GLGLSI      L GG +   S     +T    +P 
Sbjct: 1552 MRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIYAQSETGRGSTFTLYLPL 1609


>gi|115359898|ref|YP_777036.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285186|gb|ABI90702.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 1002

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 12/260 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + T  ++T   + E  L E  EA   A++ K++F+  +S+E+R+PL  I+G  +L++   
Sbjct: 491 LCTLTDITARKQMEDKLREAREAADDANKAKSTFLATMSHEIRTPLNAIVGNLELMER-- 548

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L +++ + ++ + +SS  LL ++ND+LDL+ V++  M L      L  ++ +V    
Sbjct: 549 -APLPAEERRRLQTVMSSSDALLRVINDVLDLSKVESNQMVLEAVPFDLRAVVRDVAAIF 607

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                  ++ ++   D +L   +V D  RL QI S ++SNA+ F+ +GS V ++A     
Sbjct: 608 HPLAAARHLALECRIDPQLADGYVGDPTRLRQIVSNLVSNAIKFTERGS-VTIEARPTGT 666

Query: 718 -----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
                     V++ G  I  +   ++F+ +V        +  G GLGL +      L  G
Sbjct: 667 VGQARGVEVVVRDTGIGIAPESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMHG 726

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +++ S      T    +P 
Sbjct: 727 DLAVESRPGQGATFIVSLPL 746


>gi|240145433|ref|ZP_04744034.1| putative sensory box histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
 gi|257202562|gb|EEV00847.1| putative sensory box histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
          Length = 867

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 151/357 (42%), Gaps = 32/357 (8%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            ID+L E V V   D R    N     +  +        T    I A      +  D  D
Sbjct: 159 IIDNLKEAVIVTDADHRFLFLNSMADKIITSINKEQGYSTD-DKIYAFIQGSQDFFDWKD 217

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               +  +   + + +QG +  + D                     + +     + L  +
Sbjct: 218 RHYQVEETVLKDNELIQGYMMTIVD------------------VTKIIEQNHLMKRLVLQ 259

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E     +  K +FV ++S+E+R+P+ +I+G T++L  S+    + K+ +Y+  I +S  
Sbjct: 260 TEDA---NRAKTNFVSNMSHEIRTPMNSIVGITEILLRSRH---SPKEQEYLLNIQSSGR 313

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL ++ND+LD + ++AG M+L         L ++++ S+  ++  + + +    D  + 
Sbjct: 314 VLLTIINDVLDCSKMEAGKMQLFDEPYDTCSLFHDLRISMENRIGHSGLELIYDIDQDIP 373

Query: 679 S-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPED 733
                D  R+ Q+   +++NA+ ++ KGS    V ++    +     + V + G  I ++
Sbjct: 374 CKLKGDMGRIRQVIINLVNNAIKYTEKGSVRFSVHVRQKNTDKVMLYYEVADTGIGIRKE 433

Query: 734 MCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             K +F+ F            G GLGL+I ++ +N+ GG + + S     +     I
Sbjct: 434 DQKILFDAFQRVEMDRNRYVEGTGLGLTISQNLVNMMGGVIEVESEYGKGSRFFFTI 490


>gi|256419624|ref|YP_003120277.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256034532|gb|ACU58076.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 732

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 144/283 (50%), Gaps = 11/283 (3%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           + +    +  ++   +I +  A  +      +    +    L    + +R+   IK +F+
Sbjct: 177 ESSRRARNWGIILICLILMTAAGMLWFVMSRIRRQQQLILELDRSEKKIREIAMIKENFM 236

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  I+GFT+LLK+ KL   +++   +V  I  +   LL ++NDILDL+ +
Sbjct: 237 TNMSHEIRTPLNAILGFTNLLKSRKLDDSSTE---FVGSIQKAGENLLTIINDILDLSKI 293

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           +AG++++  +   +  LL+ ++   + K+ E  + ++      +  + + D  RL Q+  
Sbjct: 294 EAGMVRIESNPFSVRGLLHSIQTLFSEKVKEKKLVLQGEIASDVPDTLIGDATRLTQVLV 353

Query: 693 KILSNAMDFSSKGSTVI-LKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            ++ NA+ F+ KG  VI +   + +G+ I   F++ + G  I  D   S+F+RF      
Sbjct: 354 NLIGNALKFTEKGGIVISVSNRQSDGNIIQLAFAITDTGIGIEPDKLGSIFDRFNQAEDS 413

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  G GLGLSIV+  + L GG +S+ S     TT    IP
Sbjct: 414 ITRKYGGTGLGLSIVKDLVILQGGDISVESEPGKGTTFRFFIP 456


>gi|154490237|ref|ZP_02030498.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
 gi|154089129|gb|EDN88173.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 101/524 (19%), Positives = 207/524 (39%), Gaps = 44/524 (8%)

Query: 294 DVSKEITVNDQLTH-TYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNP 350
           D+       D L      IL  L + + + D        + NR   E+  I    +  + 
Sbjct: 56  DIRPISQKQDSLHGLINTILDKLPLGVFVKDAEDGFRYLYWNRFMEEITGIGTEEVEGHN 115

Query: 351 SNDELLEFL----------RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
             +   + +          R   +    + +     + + + K  E  K    L NG+ L
Sbjct: 116 DFELSFDAIMPAEERLGLDRDVMETGRTIEFSGKISDAYGIPKDIEVTKFPIALSNGKPL 175

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI--DHLSEGVAVFGPDGR--- 455
                       + ++ ++TV+  +E        +    +  + +        PD +   
Sbjct: 176 -----------LLALWRDVTVRNKMENTLRRSQVLTKMALHSNDIRLCSIFVNPDSKRNY 224

Query: 456 ---IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
              +   N       K +E                 R  ++     L +  I+    E +
Sbjct: 225 DDSVVQVNN--WLPGKEDELVDISWPRFAARVHPDDRERHDEAFRKLCSGEISEMKIELR 282

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                ++         ++            +   +N+ +    E  L E       AD++
Sbjct: 283 VKYPGMDHYHWRESSATVYERDERGRVLVILGCTINIQERKGQELNLEEAKHKAELADKM 342

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ ++  +S+E+R+PL  I GF++L+        + ++ +Y E I  ++ +L+ L+NDIL
Sbjct: 343 KSKYLADMSHEIRTPLNAITGFSELMA---FADSDEERREYYEIIKTNNLLLMQLINDIL 399

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ ++A  ++++Y  + +N L++ +  SI  +M E  +++ +        F AD  RLL
Sbjct: 400 DLSKIEADAIRISYEPVDINGLMDTIFASIKLRMPE-GVQLFLEKGSCTCCFGADSIRLL 458

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+ + + +NA+  + +GS  +      +    F VK+ G+ I +D  +S+F RFV     
Sbjct: 459 QLINNLANNAIKNTKQGSITLGYTCLPDKCLEFYVKDTGTGIAKDKLESLFTRFVKVNDY 518

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               G+GLGL+I +  +   GG + + S     +T +  +PS E
Sbjct: 519 --VEGIGLGLAICQGLVTKMGGSMHVESELGVGSTFSFVLPSHE 560


>gi|301310964|ref|ZP_07216893.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831027|gb|EFK61668.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 769

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 158/379 (41%), Gaps = 21/379 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ +  +   L +     +   +     +     I   N  + +     +  ++    I 
Sbjct: 395 ELRIARQAQDLNQKYQLVLKASNMMTWTWDVRAEIIECNNVYLTQRSARDKGVNG---IF 451

Query: 482 NIAATCSRYYNESDGWDLFAAIITSF-DDERKSLQGTLELLSDS-----VLEYSII---- 531
            ++          D  D     + +    E + +   +  L D+      +E   I    
Sbjct: 452 KMSPDEFYSGVYPDDLDRLRDKMEALASGEGQPVDEEIRYLDDTGENYIWIEIYAITGKT 511

Query: 532 -PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            P+     ++    +    +           + +++ +K++F+ ++S+E+R+PL  I+GF
Sbjct: 512 DPVGKPIYLIGGTALIHQRKLMEQELRDKAKVEESNRLKSAFLANMSHEIRTPLNAIVGF 571

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           ++LL  +   + + +  ++ E I  ++ +LL LVNDILDL+ ++AG M   YS   ++ L
Sbjct: 572 SNLLAQT---NPSEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTL 628

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
              + Q+  +++ +  + +      +     +++ RL Q+ +  L+NA  F+ +GS + +
Sbjct: 629 FRSLYQTFQSRV-KGGVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS-IRM 686

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
                     F VK+ G  I       VF RF       Q  G GLGLSI ++ +    G
Sbjct: 687 GYKEREDGLYFYVKDTGKGIERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHG 744

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S +   +T    IP
Sbjct: 745 KIGVESEEGKGSTFWFTIP 763


>gi|260771912|ref|ZP_05880830.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
 gi|260613204|gb|EEX38405.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
          Length = 929

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 142/319 (44%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  RK +      LS+  +E          
Sbjct: 202 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDSLRKGINAMAVSLSEYHVEMQHSIDQATS 261

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 262 DLRETLEQLEIQNVE--LDIAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKT 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        + L EV  
Sbjct: 320 Q----LTNSQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVN 375

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
             AT  HE  + I +  D K+    V D  R+ Q+ + ++ N++ F+ +G+    V +++
Sbjct: 376 LQATSAHEKGLEITLKVDPKIPLGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRS 435

Query: 713 ARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
            RD+  +  F V++ G  I E     +F  F         +  G GLGL I +  +   G
Sbjct: 436 QRDDMVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVGQMG 495

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 496 GEISLTSRLHQGSTFWFTL 514


>gi|158338165|ref|YP_001519342.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158308406|gb|ABW30023.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 417

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 4/253 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
               +       +  +N+ L KA  +K+ F+  +S+ELR+P+  I+GF+ LL       L
Sbjct: 151 QQNEELAHHRAQIEAQNQELIKAYRLKSEFIATISHELRTPMNAIMGFSQLLLRQYPDPL 210

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q   V+ I  +S  LL +VN++LD + ++A  ++L+     L+  +    Q +    
Sbjct: 211 SEQQLDMVQRIFDNSRNLLTMVNEVLDFSKIEANRLELHPEPFQLSVPILATIQELQALA 270

Query: 663 HENNIRIKVISDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            E  + +K      L S     D + L ++   ++SNA+ F+  G   +           
Sbjct: 271 VEKALTLKAEIPETLQSIQLTNDPECLRRVLVNLISNAIKFTEAGEVTLQLHQPQPDQIK 330

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  +   ++F+ F            G GLGL+I ES +    G +S+SS  
Sbjct: 331 ISVVDTGIGMTPEQLSTIFDPFCQADQSLTRHHSGTGLGLAITESLVKAMQGQISVSSQP 390

Query: 779 EGVTTINCRIPSK 791
              +T    +P +
Sbjct: 391 GVGSTFTVELPLQ 403


>gi|151220230|ref|YP_001331053.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|212288553|sp|A6QD58|WALK_STAAE RecName: Full=Sensor protein kinase walK
 gi|150373030|dbj|BAF66290.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 608

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 154/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     ++   +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 286 RIVNDMALKMFGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 343

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 344 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++           +         K      D  ++ Q+F  +++
Sbjct: 443 SDQINKEIIDFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   ++++ +           D +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMFGM--------AKEDII 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++   +  +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|300867078|ref|ZP_07111745.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334909|emb|CBN56911.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1214

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 24/291 (8%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D   ++   PL    T++   +VT+     + L  KN  L + + +K+ F+  +S+EL++
Sbjct: 373 DRTWQFVKQPLSETLTLVLAQDVTEEQLVAKELAAKNADLIQLNRLKDEFLACISHELKT 432

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT ++G + LLK   +G LN +Q++Y + I  S   L+ +VNDILDL  ++ G M+L  
Sbjct: 433 PLTAVLGLSSLLKDRAIGELNDRQARYAKLIHQSGRHLMTVVNDILDLTRMETGQMELIV 492

Query: 643 STIVLNDLLNEVKQSIATKMHENN----------------------IRIKVISDGKLGSF 680
             + +  + +   +       + +                      I   +  +  L   
Sbjct: 493 EPVQIAAVCDRAFEGAKLLQQQEDKPTAARDDPTNRDSTSGKSDSPIDFTLEIESGLAHI 552

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           VAD  RL Q+   +LSNA+ F++ G+ + LK     G   F+V + G  IP D    +F 
Sbjct: 553 VADELRLRQMLVNLLSNALKFTAPGAAIGLKVNHWEGWIAFTVWDTGIGIPADKQHLIFQ 612

Query: 741 RFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F         + +G GLGL + +    LHGG VS  SS+   +     +P
Sbjct: 613 KFQQLESPLTRRFQGTGLGLVLTQRLARLHGGDVSFISSEGQGSQFTLLLP 663


>gi|269967966|ref|ZP_06182005.1| sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|269827402|gb|EEZ81697.1| sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 811

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 14/247 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++    + +   K +F+  +S+E+R+P+  ++G   +L  +    L  +Q +++  + 
Sbjct: 344 LEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLTDEQRKHLRTLY 400

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G ++       +  ++  +K    T   E  +R +V+S 
Sbjct: 401 DSGDHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLRFRVVSH 460

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSS 729
              G +   D+ RL Q+   +L+NA+ F+ +G  V ++ A          I  VK+ G  
Sbjct: 461 LPTGRWYNNDKARLRQVLFNLLNNAVKFTDRG-IVEVELAEQSSKAGTKLILKVKDTGIG 519

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  K +F  F        RR  G GLGL+IV+      GG V + S ++  TT    
Sbjct: 520 ISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAGTTFTVE 579

Query: 788 I---PSK 791
           I   P K
Sbjct: 580 IALTPCK 586


>gi|229506132|ref|ZP_04395641.1| sensor protein TorS [Vibrio cholerae BX 330286]
 gi|229356483|gb|EEO21401.1| sensor protein TorS [Vibrio cholerae BX 330286]
          Length = 984

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L + Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTATQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRV 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFWFTLPL 691


>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 929

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 126/286 (44%), Gaps = 11/286 (3%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R+ L   L++     +   +I                 +++   +    E    +   K+
Sbjct: 224 RRILYKNLQMGLGGAILLLVIGCGILLARQLAAVNVQLMQSGEEMRIAKEQAEASSRAKS 283

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  I+G T+LL  ++   LN +Q  Y+  +  S+  L++++NDILD 
Sbjct: 284 EFLANMSHEIRTPMNGILGMTELLMDTE---LNPQQFDYLRSVKVSAENLMDIINDILDF 340

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + ++ G ++      +L  +L +  ++++ +  +  + +    D  L  + + D  RL Q
Sbjct: 341 SKIEVGRLETEAIPFMLRSMLGQTLRTLSVRAAQKGLELVFQVDPDLPDTLIGDPGRLRQ 400

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDN--GD---FIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +   +  NA+ F+ +G   +L + +    G      F V++ G  I  +  + +F  F  
Sbjct: 401 VLLNLAGNAVKFTDQGEVELLVSKQQELPGKELLLRFEVRDRGIGISPEHQQRIFAPFEQ 460

Query: 745 NAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                     G GLGL+I    + L GG + + S     +T    +
Sbjct: 461 ADLSTTKKYGGTGLGLAISSRLVQLMGGEIGLESVAGQGSTFWFTL 506


>gi|261253892|ref|ZP_05946465.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891]
 gi|260937283|gb|EEX93272.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891]
          Length = 929

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 126/243 (51%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT+    L + Q+ Y++ 
Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTT----LTNSQTDYLQT 330

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L          L EV    AT  HE  + + + 
Sbjct: 331 IENSANNLLNIINDILDFSKLEAGKLALENIPFDFQASLEEVVNLQATSAHEKGLELTLK 390

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNG 727
            D K+ +  V D  R+ Q+ + ++ N++ F+ +G+    V L++ +++  +  F V++ G
Sbjct: 391 IDPKVPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDSVELQFMVRDTG 450

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 451 IGISERQQSQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 510

Query: 786 CRI 788
             +
Sbjct: 511 FTL 513


>gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
 gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
          Length = 921

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 12/316 (3%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            IRN+  T  R         +   ++   D  +  +      L+    E           
Sbjct: 202 PIRNMVETVDRIRRGQLDSRVEGHMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYD 261

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +   +    E  L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + + 
Sbjct: 262 LRETLEQMEIQNVE--LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTL 316

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S Q  Y++ I  S+  LLN++ND+LD + ++AG + L      L++ L+EV   +
Sbjct: 317 KTQLTSTQKDYLQTIERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLL 376

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
           A   HE  + + +     +   FV D  RL QI + +L NA+ F+ +G+  + ++  R  
Sbjct: 377 AHTAHEKGLELTLNIQHDVPEQFVGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRRQE 436

Query: 717 G---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
                    +K+ G  I E     +F  F         Q  G GLGL I +  +   GG 
Sbjct: 437 SLQVLLEIQIKDTGIGIAEAQQTQLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGD 496

Query: 772 VSISSSDEGVTTINCR 787
           +S  S     TT  C 
Sbjct: 497 ISFHSKPNQGTTFWCT 512


>gi|70728487|ref|YP_258236.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68342786|gb|AAY90392.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1200

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 161/381 (42%), Gaps = 11/381 (2%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  ++  E + N  +  +   +D +   + V    GR+   N ++     T   ++  
Sbjct: 564 RQIQQRLLAEQRLNDQLVFKRALLDGIPNPIFVRDLQGRLMTCNKSYEQQLGTSLAQIQG 623

Query: 477 GTHIR-NIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLP 534
                 +I    +      +   L A+  + F D + +S  G +++   +V  YS     
Sbjct: 624 RQLTELDILPPATAQQLHGEFMQLLASGESVFADRQVESRDGPIDVYQWAVPFYSAEGQL 683

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +  ++++T+  R E  L E  +A  +A+  K +F+  +S+E+R+P+T I+G  + L
Sbjct: 684 QG-LLGGWIDITERKRLENQLVEARQAADQANAAKTAFLSTMSHEIRTPMTAILGLLE-L 741

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +  +        S+ +     S+  L+ L+ D LDLA ++AG M L      L      +
Sbjct: 742 EKEQARLRGVPFSEALRVAYQSAQELIGLMGDSLDLAKIEAGYMHLVPQVTALKPFFESI 801

Query: 655 KQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKA 712
           +Q          ++++++   +  G ++ D  RL Q+   +LSNA+ F+++G     ++ 
Sbjct: 802 RQLFEVTARNQGVQLQLVFSERAKGRYLFDPARLRQVVHNLLSNALKFTAQGEVRMTVEC 861

Query: 713 ARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
             D         SV + G  I  +    +F  FV           G GLGLSI    + L
Sbjct: 862 QPDESGLECLRISVADTGRGISSEQQAKLFTPFVQADAMTSSAYGGTGLGLSICRQLVEL 921

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG + + S     T ++  +
Sbjct: 922 MGGRIHLLSEPGVGTVVSLEL 942



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 58/168 (34%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +  L  ++L++ +   + L D +   ++ RD  G ++  N SY++
Sbjct: 553 LISLAWNSRLKRQIQQRLLAEQRLNDQLVFKRALLDGIPNPIFVRDLQGRLMTCNKSYEQ 612

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS-----SALEKNFCETVSTLEHG--NNKSY 277
              T     Q        +      +++        ++ E  F +       G  +   +
Sbjct: 613 QLGTSLAQIQGRQLTELDILPPATAQQLHGEFMQLLASGESVFADRQVESRDGPIDVYQW 672

Query: 278 KIVRVLNSFGEAGIA---IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            +          G+    ID+++   + +QL    +       A   F
Sbjct: 673 AVPFYSAEGQLQGLLGGWIDITERKRLENQLVEARQAADQANAAKTAF 720


>gi|312881713|ref|ZP_07741490.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370603|gb|EFP98078.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 927

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT    SL + Q+ Y++ 
Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT----SLTASQTDYLQT 330

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++ DILD + ++AG + L        + L EV    AT  HE  + + + 
Sbjct: 331 IEKSADNLLSIIKDILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLK 390

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+  G+    V L++ +++  +  F V++ G
Sbjct: 391 VDPKIPLGLVGDPLRIQQILTNLVGNSIKFTEYGNIDVSVELRSQKEDSVELQFMVRDTG 450

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 451 IGISERQQSQLFQAFSQADASISRKYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 510

Query: 786 CRI 788
             +
Sbjct: 511 FTL 513


>gi|291539348|emb|CBL12459.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 867

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 151/357 (42%), Gaps = 32/357 (8%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            ID+L E V V   D R    N     +  +        T    I A      +  D  D
Sbjct: 159 IIDNLKEAVIVTDADHRFLFLNSMADKIITSINKEQGYSTD-DKIYAFIQGSQDFFDWKD 217

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               +  +   + + +QG +  + D                     + +     + L  +
Sbjct: 218 RHYQVEETVLKDNELIQGYMMTIVD------------------VTKIIEQNHLMKRLVLQ 259

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E     +  K +FV ++S+E+R+P+ +I+G T++L  S+    + K+ +Y+  I +S  
Sbjct: 260 TEDA---NRAKTNFVSNMSHEIRTPMNSIVGITEILLRSRH---SPKEQEYLLNIQSSGR 313

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL ++ND+LD + ++AG M+L         L ++++ S+  ++  + + +    D  + 
Sbjct: 314 VLLTIINDVLDCSKMEAGKMQLFDEPYDTCSLFHDLRISMENRIGHSGLELIYDIDQDIP 373

Query: 679 S-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPED 733
                D  R+ Q+   +++NA+ ++ KGS    V ++    +     + V + G  I ++
Sbjct: 374 CKLKGDMGRIRQVIINLVNNAIKYTEKGSVRFSVHVRQKNTDKVMLYYEVADTGIGIRKE 433

Query: 734 MCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             K +F+ F            G GLGL+I ++ +N+ GG + + S     +     I
Sbjct: 434 DQKILFDAFQRVEMDRNRYVEGTGLGLTISQNLVNMMGGVIEVESEYGKGSRFFFTI 490


>gi|213971910|ref|ZP_03400010.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
 gi|301384480|ref|ZP_07232898.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060514|ref|ZP_07252055.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato K40]
 gi|302132002|ref|ZP_07257992.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923335|gb|EEB56930.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
          Length = 917

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H  ++ +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|330900706|gb|EGH32125.1| response regulator receiver [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 934

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 159/364 (43%), Gaps = 14/364 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ +++ V           S  A R   + +E           +     
Sbjct: 127 LRALTERDIEFLELVADNVGT---------SIEAARYRQRLQEVLAETQQLNEELQVQQE 177

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + I+       ++ Q  LE  ++ + + S       Q      N  + 
Sbjct: 178 ELRTANEELEEQSRILKESQAHLETQQAELEQTNEQLADQSQALAE--QRDALDRNNEEL 235

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q +
Sbjct: 236 NIAQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK 295

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD++ V+AG +++      +  L+  ++        E  + 
Sbjct: 296 FAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLIEGLRTLFQPLAAEKKLA 355

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             V    G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++G
Sbjct: 356 FTVDIQTGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSG 415

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  + +F  F        RR  G GLGLSI      L GG +S++S+    +  +
Sbjct: 416 IGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFS 475

Query: 786 CRIP 789
             +P
Sbjct: 476 LVLP 479


>gi|256839617|ref|ZP_05545126.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738547|gb|EEU51872.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 771

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 134/249 (53%), Gaps = 5/249 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +N+      E +L    +   ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +  
Sbjct: 516 CLNIQRIKDTENSLIAARQKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPL 574

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +++++++ I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    
Sbjct: 575 EPEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLM 634

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
           M E  + +K+    +     +D  RL Q+ +  ++NA+ F++KG   +  + + D    +
Sbjct: 635 MPE-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 693

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SVK+ G  IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S    
Sbjct: 694 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLESEVGV 751

Query: 781 VTTINCRIP 789
            +     +P
Sbjct: 752 GSKFTISLP 760


>gi|74313747|ref|YP_312166.1| aerobic respiration control sensor protein ArcB [Shigella sonnei
           Ss046]
 gi|73857224|gb|AAZ89931.1| histidine protein kinase/phosphatase [Shigella sonnei Ss046]
          Length = 778

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 152/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +   +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PVDVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPVD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|323483856|ref|ZP_08089233.1| histidine kinase [Clostridium symbiosum WAL-14163]
 gi|323402810|gb|EGA95131.1| histidine kinase [Clostridium symbiosum WAL-14163]
          Length = 939

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 100/603 (16%), Positives = 214/603 (35%), Gaps = 53/603 (8%)

Query: 232 VFQKAIGESRKLFKEEIKKRMIS-SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
             ++     R L       ++IS   +  +   E +     G  +  K++ +     +  
Sbjct: 185 SAEEVAVPYRHLLLGLADTKLISKRLSDGEKQIEIIFRDIFGGWRRIKLLPIDGYSSKHP 244

Query: 291 IAIDVSKEITVNDQLTHTYEILHNL-----TVAIAIFDQNRYLQFHNRSF-VELWEIDLA 344
             I    E     Q     ++L  L     ++ +   D +         F  E  E    
Sbjct: 245 FVIAAFDEQDDRQQAQMREDVLSTLCQCYYSIYLFDLDNDMEESVWQEEFIRESREFPKG 304

Query: 345 FLAT-------NPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPN 396
            L+T       +    E  E +R A       N  + +  ++ + ++        W    
Sbjct: 305 SLSTYYDKFIRDHVFSEDKEKMRRAGSPDFLRNTLSAQHPVYDIDFRRIYPEGLIWVRSR 364

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGR 455
                +      +   I+    +  Q   E +     ++  E+  ++  G++VF      
Sbjct: 365 FSIAEIKGGRVSK--VIFANMQIHEQKMKELEEQQQKRLYFES-QNIIRGLSVFYHSVFY 421

Query: 456 IKLSNPAFR--SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           I L   +F+  +L      RL   T    +    S + +E D       +  S  D R+ 
Sbjct: 422 IDLLTESFQPFNLMDDLACRLGSSTDYEYLKTVYSCFIHEEDRKRFMEEL--SACDIRRR 479

Query: 514 LQG-----TLELLSD-----SVLEYSIIPLPNAQTMLT---------FVNVTDSVRAERA 554
           + G      LE   +       +   II   +   +                   R  +A
Sbjct: 480 ITGGDMIYALEYRRNYGGAYGWMRMHIILAESRNGVPVKVILAAHSVEEEKEQEERNRKA 539

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    EA ++A+E K++F+  +S+++R+PL  I G + +  +        K    ++ I+
Sbjct: 540 LLAAYEAAKQANEAKSNFLAQMSHDIRTPLNAITGMSSIALSQAEDP--EKVRDCLKKIT 597

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  L+ L+ND+LD++ ++ G ++L  +   L +LL +V+  ++ +       +   + 
Sbjct: 598 LSSHHLIELINDVLDMSKIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQELCFHNP 657

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNG 727
                    D  R+ Q+   +++NA+ ++  G  + +     +      G  +F+V + G
Sbjct: 658 KSPHDHLCGDAGRIRQVLINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCLVFTVADTG 717

Query: 728 SSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +D    +F  F           +G GLG+ I    +    G++ + S     +   
Sbjct: 718 IGMSKDFLDYIFVPFSRAEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESEPGKGSRFT 777

Query: 786 CRI 788
             +
Sbjct: 778 VTL 780


>gi|319786375|ref|YP_004145850.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464887|gb|ADV26619.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
          Length = 1187

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 8/248 (3%)

Query: 548  SVRAERALT-EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              RA+  L   K E   +A   K+ F+  + +E+R+P+T ++G ++LL  +   SL+S+Q
Sbjct: 799  RSRAQWQLALHKRELAEQASMAKSRFLATLGHEVRTPMTGVLGMSELLLDT---SLDSRQ 855

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              YVE I  +   LL LVND LDLA ++AG ++L+        L  EV   +A    +  
Sbjct: 856  RSYVESIRRAGDHLLRLVNDALDLARIEAGKLELDSQDFDPVALAEEVAGLMAPVAEQRG 915

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +   +    ++  +   D  R+ QI   +L NA+ F+ +G  V+          +F V++
Sbjct: 916  LAFHLRVAPEMPAAVRGDPGRVRQILLNLLGNAVKFTDRGEVVLELGTVSPEGLVFVVRD 975

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             G  + E+    +F RF             G GLGL+I +      GG + + S+    T
Sbjct: 976  TGPGLSEEQKARLFRRFEQADGARTTSRYGGSGLGLAICQELAVAMGGRIEVDSTLGHGT 1035

Query: 783  TINCRIPS 790
                ++P 
Sbjct: 1036 AFRVQLPL 1043


>gi|269966474|ref|ZP_06180558.1| putative histidine kinase [Vibrio alginolyticus 40B]
 gi|269828931|gb|EEZ83181.1| putative histidine kinase [Vibrio alginolyticus 40B]
          Length = 1060

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+    +  +   KA + K+SF+ ++S+E+R+PL  +IG +++L  +   SL + Q  Y
Sbjct: 384 QAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---SLTATQRDY 440

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   I+ K  E  I +
Sbjct: 441 VDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDV 500

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVK 724
           +V          + D  R+ Q+    +SNA+ F+ +G    S +  +         FSVK
Sbjct: 501 QVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITREIKNGEAVIEFSVK 560

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I     K +F  F    +   R   G GLGL+I    + L GG + + S     +
Sbjct: 561 DSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGS 620

Query: 783 TINCRI 788
                +
Sbjct: 621 RFFFEL 626


>gi|229526782|ref|ZP_04416186.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
 gi|229336940|gb|EEO01958.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
          Length = 984

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L + Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTATQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRI 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFGFTLPL 691


>gi|71278636|ref|YP_270772.1| hybrid sensory histidine kinase BarA [Colwellia psychrerythraea
           34H]
 gi|71144376|gb|AAZ24849.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 948

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L+      ++A+ +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L   Q  Y++ 
Sbjct: 289 ELSISKRKAQEANRVKSEFLANMSHELRTPLNGVIGFTRQVLKT----PLTENQRDYLQT 344

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + +DAG M        L + ++E    +A   H+ NI + + 
Sbjct: 345 IDRSANNLLTIINDILDFSKLDAGKMVTENIPFSLRESIDETLTLLAPSAHKKNIELSIN 404

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VIL---KAARDNGDFIFSVKNNG 727
              +L  S V D  R+ QI + ++SNA+ F+ +GS  V +   + +++N      V + G
Sbjct: 405 LPQELPDSLVGDTMRIKQIITNLVSNAIKFTPQGSVAVDITSEEISQNNIKLKVIVTDTG 464

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +  +  +++F+ F        R   G GLGL I +       G +  SS     ++  
Sbjct: 465 IGMTTNQQRTIFDAFTQADQSITRLYGGTGLGLVICQRLAQEMNGDIGFSSEKNHGSSFW 524

Query: 786 CRI 788
              
Sbjct: 525 FTF 527


>gi|86136730|ref|ZP_01055308.1| hypothetical protein MED193_13687 [Roseobacter sp. MED193]
 gi|85826054|gb|EAQ46251.1| hypothetical protein MED193_13687 [Roseobacter sp. MED193]
          Length = 518

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 156/383 (40%), Gaps = 15/383 (3%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            I  +  +    +    + K L   ++  +       + VW +   G + W N++Y   +
Sbjct: 122 WIDGITRVQLRRSTLEEQNKSLDQELTTLRAAVHQAPYPVWLQSDEGAVTWTNLAYDDLS 181

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
                  QK  G   + F E +   +    +  K    ++   +      Y I       
Sbjct: 182 -------QKLRGRDAE-FSEPLFDNLDEPKSSGKAERISIPMPDTTKRLWYNISTTETEA 233

Query: 287 GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G    A+DV+     E+   + +    +    L++ +AIFD+NR L   N   ++L  + 
Sbjct: 234 GWLCHAVDVNAVVDAEVAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALP 293

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTL 400
             FL+  P+     + LR    +PE  N+ +W+  I  + +++    +++TW LP+G   
Sbjct: 294 AGFLSARPTLMTFFDRLRDQRMMPEPKNYSSWRHQIEDLLEAAAEGRYQETWSLPSGSVY 353

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            V    +P G   ++FE++T +V L  ++ + +++    +D + E +AVF  DG +  SN
Sbjct: 354 SVSGRPHPDGAIAFLFEDITAEVTLTRQFRSELEMGQSIMDQMGEAIAVFANDGTMTFSN 413

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             + +LWK + +       I + A         +  W      +    D R      ++L
Sbjct: 414 ETYHALWKMDPDASFAKVSIMDAARIWQDTCTATPAWGEIRDFVAG-SDGRTPWWTQVQL 472

Query: 521 LSDSVLEYSIIPLPNAQTMLTFV 543
              + L   +  + N  TM++F 
Sbjct: 473 RDGTPLLCKVTAIQNGATMVSFQ 495


>gi|262384058|ref|ZP_06077194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262294956|gb|EEY82888.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 768

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 158/379 (41%), Gaps = 21/379 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ +  +   L +     +   +     +     I   N  + +     +  ++    I 
Sbjct: 394 ELRIARQAQDLNQKYQLVLKASNMMTWTWDVRAEIIECNNVYLTQRSARDKGVNG---IF 450

Query: 482 NIAATCSRYYNESDGWDLFAAIITSF-DDERKSLQGTLELLSDS-----VLEYSII---- 531
            ++          D  D     + +    E + +   +  L D+      +E   I    
Sbjct: 451 KMSPDEFYSGVYPDDLDRLRDKMEALASGEGQPVDEEIRYLDDTGENYIWIEIYAITGKT 510

Query: 532 -PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            P+     ++    +    +           + +++ +K++F+ ++S+E+R+PL  I+GF
Sbjct: 511 DPVGKPIYLIGGTALIHQRKLMEQELRDKAKVEESNRLKSAFLANMSHEIRTPLNAIVGF 570

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           ++LL  +   + + +  ++ E I  ++ +LL LVNDILDL+ ++AG M   YS   ++ L
Sbjct: 571 SNLLAQT---NPSEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTL 627

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
              + Q+  +++ +  + +      +     +++ RL Q+ +  L+NA  F+ +GS + +
Sbjct: 628 FRSLYQTFQSRVKD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS-IRM 685

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
                     F VK+ G  I       VF RF       Q  G GLGLSI ++ +    G
Sbjct: 686 GYKEREDGLYFYVKDTGKGIERKNLPHVFERFAKFDSFIQ--GTGLGLSICQTILENLHG 743

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S +   +T    IP
Sbjct: 744 KIGVDSEEGKGSTFWFTIP 762


>gi|332519219|ref|ZP_08395686.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332045067|gb|EGI81260.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 507

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 18/254 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  KN  L++ +  KN+F+ + S+ELR PLT I+ F+D+L  ++   L+ +Q  Y++ 
Sbjct: 120 QILELKNTYLKEKEAFKNTFIANFSHELRDPLTGILTFSDILSKTQ---LDPQQKDYIQI 176

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +++SS+ L  +++DILD++ ++AG ++L      L +LL E+K +   K  + +I     
Sbjct: 177 LNSSSSFLKQMIDDILDISKIEAGKLELTIDPFNLKELLEEIKLNYIIKAQQKSIDFNYK 236

Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST---VIL-KAARDNGDFIFSVKNNG 727
            D  L   V  D +RL Q+ + +L NA+ F+  GS    V L +         F +K+ G
Sbjct: 237 FDENLPEIVGGDSKRLRQVITNLLDNAIKFTHTGSVTLAVSLNQIRAQKASIHFEIKDTG 296

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI--- 784
             I E+    +F+ F         +G GLGL+IV+  + L    +++ S     +T    
Sbjct: 297 IGIKEEHFNDIFSSFTQVNENDNYKGTGLGLAIVKHLVELSNSKINVESKLGKGSTFSTN 356

Query: 785 -------NCRIPSK 791
                  + ++P K
Sbjct: 357 INFLSNSSLKLPKK 370


>gi|117924203|ref|YP_864820.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607959|gb|ABK43414.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 894

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 162/398 (40%), Gaps = 29/398 (7%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +   +NL  +++   +    V    + ++     + +   +G +   NP F SL     
Sbjct: 362 VVRTRDNLRGEIEERKRIEAEVTKLSQAVEQSPTALLITDTEGSVLYVNPEFVSLTGYRP 421

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--- 528
                      +     R     +        +    ++ ++ QG       +   Y   
Sbjct: 422 ---------DEVIGRNPRMLKSGETARETYRDLWGTLNQGRAWQGVFRNRKKNGKRYWEK 472

Query: 529 -SIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +I P+ ++       M    +++  +  E+ +     A   A+++K+ F+ H+++E R+
Sbjct: 473 NTISPIRDSDGKVINFMSIKEDISARIALEKEIEHARTAAETANQVKSEFLTHMTHEFRT 532

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I G   L++     +L+ KQ + +E I   +T L  ++ D++DL+ V++    L+ 
Sbjct: 533 PLNIIKGCVKLIRDE--NNLSDKQGRQLENILDGATHLATMIQDLVDLSRVESEQFHLHE 590

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
               L+ LL E+   +  K  E  +   V     L    + D  RL    + +L+NA+ F
Sbjct: 591 EPCDLSHLLTELHDEMELKSQEKQLTFAVEVSPTLPPEIMLDAARLRHALTNLLTNAIKF 650

Query: 702 SSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGV 754
           + +G  V L    +       G   F + + G  IP +   ++F  F         R GV
Sbjct: 651 THEG-QVSLNCWYEGETKARTGTLHFVISDTGVGIPSEQIHAIFEPFNQGDMPAMTRGGV 709

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I +  + +  G + + S  +  +  + ++P ++
Sbjct: 710 GLGLTITKRLVEVMDGTIEVRSEPDHGSVFHIQLPCRK 747



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/386 (15%), Positives = 129/386 (33%), Gaps = 66/386 (17%)

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLK----CKKLSNHISVFKVLFDSLDFLVW 207
            I +EGR     +   I  +  I SELAE   +     ++    I+ F ++  S+  ++W
Sbjct: 259 YINLEGR---GTSRTMIEMVSLISSELAEERSQDILITERQQRAITAFVLILASILIMLW 315

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
                  +                              E  + ++ +    E +  E  +
Sbjct: 316 VTRTIRRVSLR-------------------------ISEFSQDKLGAPLTQEGSHDELDT 350

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
                     ++VR  ++        ++ +   +  ++T   + +     A+ I D    
Sbjct: 351 LASRFERLMQEVVRTRDNLRG-----EIEERKRIEAEVTKLSQAVEQSPTALLITDTEGS 405

Query: 328 LQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSA-NKLPEQLNW-KTWKENIFSVYKS 384
           + + N  FV L        +  NP   +  E  R     L   LN  + W+    +  K+
Sbjct: 406 VLYVNPEFVSLTGYRPDEVIGRNPRMLKSGETARETYRDLWGTLNQGRAWQGVFRNRKKN 465

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKY-------NTLVKVQ 436
            + + +        T+  I  S+ +        E+++ ++ LE +         T  +V+
Sbjct: 466 GKRYWEK------NTISPIRDSDGKVINFMSIKEDISARIALEKEIEHARTAAETANQVK 519

Query: 437 GETIDHLSEGV-----AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR-------NIA 484
            E + H++         + G    I+  N       +  EN L   TH+        +++
Sbjct: 520 SEFLTHMTHEFRTPLNIIKGCVKLIRDENNLSDKQGRQLENILDGATHLATMIQDLVDLS 579

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDE 510
              S  ++  +     + ++T   DE
Sbjct: 580 RVESEQFHLHEEPCDLSHLLTELHDE 605


>gi|314939996|ref|ZP_07847191.1| PAS domain S-box [Enterococcus faecium TX0133a04]
 gi|314950768|ref|ZP_07853844.1| PAS domain S-box [Enterococcus faecium TX0133A]
 gi|313597048|gb|EFR75893.1| PAS domain S-box [Enterococcus faecium TX0133A]
 gi|313640766|gb|EFS05346.1| PAS domain S-box [Enterococcus faecium TX0133a04]
          Length = 599

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 145/371 (39%), Gaps = 25/371 (6%)

Query: 424 DLETKYNTLVKVQG--ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            L   +N L +       + H+++GV      G++   N    SL   +    + G  I 
Sbjct: 237 QLADTFNQLAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLDIKNEE-AIGQSIL 295

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +      Y       D    ++       +S Q  L       +++S+I   +      
Sbjct: 296 TLLDIEEEYTLRKLLEDPNEMVLDRSTSTLESDQMILR------VDFSMIRRESGFISGL 349

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              + D    E           K +  +  FV +VS+ELR+PLT++  + + L       
Sbjct: 350 VAVLHDVTEQE-----------KTERERREFVSNVSHELRTPLTSMRSYIEALSEGAWKD 398

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                  +++     +  ++ ++ND+L+L+ +D G  +L    +  N+L+N V       
Sbjct: 399 -EEVAPNFLKVTLDETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMM 457

Query: 662 M--HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +   E N +I+     +      D  +++Q+   I++NA+ +S  G T+  +    + + 
Sbjct: 458 VGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNNV 517

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           + S+ + G  IP+     VF RF        R   G GLGL+I    I  H G +   S 
Sbjct: 518 VLSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESK 577

Query: 778 DEGVTTINCRI 788
           +   +T    +
Sbjct: 578 EGKGSTFYISL 588


>gi|91227595|ref|ZP_01261899.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|91188488|gb|EAS74781.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
          Length = 806

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 14/247 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++    + +   K +F+  +S+E+R+P+  ++G   +L  +    L  +Q +++  + 
Sbjct: 339 LEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLTDEQRKHLRTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G ++       +  ++  +K    T   E  +R +V+S 
Sbjct: 396 DSGDHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLRFRVVSH 455

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSS 729
              G +   D+ RL Q+   +L+NA+ F+ +G  V ++ A          I  VK+ G  
Sbjct: 456 LPTGRWYNNDKARLRQVLFNLLNNAVKFTDRG-IVEVELAEKSSKAGTKLILKVKDTGIG 514

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  K +F  F        RR  G GLGL+IV+      GG V + S ++  TT    
Sbjct: 515 ISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAGTTFTVE 574

Query: 788 I---PSK 791
           I   P K
Sbjct: 575 IALTPCK 581


>gi|329923873|ref|ZP_08279236.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328941046|gb|EGG37350.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 893

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 15/254 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L +  + L K+ + K+ F+ ++S+ELR+PL +++  + +L  +K G+L  ++  Y 
Sbjct: 479 AASELEKYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQHYA 538

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S + LLNL+NDILDL+ V+AG M++    + L +L   ++   +      N+   
Sbjct: 539 TVIHNSGSELLNLINDILDLSKVEAGKMQIEMDLVNLTELPELMQGYFSKSAESKNLEFD 598

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----------GDF 719
           +     L     +D  RL QI   +LSNA+ F+  GS V L+  + N          GD 
Sbjct: 599 IEMSDDLPDMMYSDGMRLHQILRNLLSNAIKFTESGS-VKLRVKKMNSIVTSDFIISGDV 657

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
           I FSV++ G  I  +  + +F  F        R   G GLGLSI      L GG++++ S
Sbjct: 658 IAFSVEDTGIGIAAEHLQPIFEAFQQGEETTARKFGGTGLGLSISLHLAKLLGGYITVES 717

Query: 777 SDEGVTTINCRIPS 790
            +   +T    +P 
Sbjct: 718 EEGIGSTFILYLPL 731


>gi|188587492|ref|YP_001919037.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352179|gb|ACB86449.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 166/409 (40%), Gaps = 37/409 (9%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKL 458
            + V S+   G +  MF +L  ++D   K  +  K      +  +S+GV     +  I  
Sbjct: 215 RIDVKSDDEIGNLGRMFNHLASRLDSTLKEISSEKGKIEAILTQMSDGVIAVNSNKEIIH 274

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA   +   E  +L             S+++ + +   +     T+  +E+      L
Sbjct: 275 INPAAERMLNVEREKLRGQC----AKELLSKFFTDEEFDQILKG-ETNVKEEK-----NL 324

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
               D V+   ++P  + +     V +  +   E+          K  +++  FV +VS+
Sbjct: 325 TTNEDMVVRAQLVPFKSEEKQYEGVIIALNDITEQE---------KLIQMRQEFVANVSH 375

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT++  + + L        +    ++++ +   +  ++ +V D+L L+ +D    
Sbjct: 376 ELRTPLTSVKSYVETLLDGAHKD-DEIAPRFLKVVQQETDRMVTMVKDLLVLSQLDRKEP 434

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-------------GKLGSFVADRQ 685
            +    I   D+L+    +I +   +  I + +                 +      D  
Sbjct: 435 IIECRDINFMDVLDRSISAIESLTKDQKIELHLDYKSLEGEYIDVFNEKPEFIRISGDSD 494

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
           +L Q+F+ IL NA+ +S  G  + +       +   SVK+NG  IP +    +F RF   
Sbjct: 495 KLTQVFTNILENAIKYSPSGEWIQITVEDYYENIKISVKDNGMGIPAEDLPRIFERFYRV 554

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             A    R G GLGL+I    I  HGG +++SS +   T +   +P  +
Sbjct: 555 EKARSRARGGSGLGLAISREIIRNHGGDINVSSQEGRGTEVIVYLPKNQ 603


>gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905]
          Length = 949

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSVESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|299149291|ref|ZP_07042351.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512725|gb|EFI36614.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 534

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 153/381 (40%), Gaps = 28/381 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + + +     K     ++++   + V  F     +  +N +  + +   E+        
Sbjct: 166 REYKEREVRASKTLSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEGKKC-- 222

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKS-------LQGTLELLSDSVLEYSIIPL 533
                     Y +  G   F       D+  +         Q   +     V   +   +
Sbjct: 223 ------WQALYKDKTGECEFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWI 276

Query: 534 PNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +      D  +  E  L    E     D +K++F+ ++S+E+R+PL  I+GF  
Sbjct: 277 DGQMAHVITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFAS 336

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  S       ++  YV+ +  ++ +LL L++DILDL+ ++AG +      + +     
Sbjct: 337 LLVES---DDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCE 393

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK- 711
           ++ ++   K  +  + + +           D++RL+Q+ +  ++NA+ F++KG  ++L+ 
Sbjct: 394 DIIRNYDIK-EDKPVPVLLAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKG-QILLEY 451

Query: 712 -AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
               D  +  FSV + G  I  D    VF+RFV        +G GLGLSI  S I   GG
Sbjct: 452 HLKEDTCEIEFSVADTGMGIEPDKVDRVFDRFVKLNSFS--KGTGLGLSICRSIIEHLGG 509

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + S     +      P K
Sbjct: 510 TIGVESEMGTGSRFWFTHPYK 530


>gi|91978537|ref|YP_571196.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91684993|gb|ABE41295.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 876

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 148/384 (38%), Gaps = 24/384 (6%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F+NL  + +LE     +  +  +   + S+ +      GR+      F  +     N L 
Sbjct: 224 FDNLRAKFELERNTEIISLLLKDFQANASDWLWQTDTQGRLVHVPDRFVEVAHLPANILC 283

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVLEYSII 531
                  I   CS            AA + +    R+ +   +  +    S  +   +  
Sbjct: 284 GALLSDVIGMLCSDDGRC-------AATVAAKMVMREPMDELIVHVTIGGSPRLWSLTAK 336

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+ +                ER    + E     +  K+ F+  +S+E+R+P+  ++G  
Sbjct: 337 PMFDYNDEFAGYRGVGRDVTERR---RAEQAEAENRAKSGFLAMMSHEIRTPMNGVLGLA 393

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           + L  +K   L+  Q   V  I  S   LL ++NDILDL+ ++ G ++        + L+
Sbjct: 394 NSLLETK---LDPDQQHAVATIRDSGDNLLRILNDILDLSKLEVGRLEFEQVNFSPSVLV 450

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + V+  +        + +K+  D +L      D  R+ Q+   +  NA+ F+  GS  I+
Sbjct: 451 DAVRSIVEPNARAKGLALKIDVDPRLPPALTGDAARIRQVLLNLAFNAVKFTDHGSVSIV 510

Query: 711 --KAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
                RD+        V + G  IP +   S+F  F        RR  G GLGL+I    
Sbjct: 511 LTCVKRDDAHATIEWQVTDTGIGIPPEQMGSLFTEFAQGDASINRRFGGTGLGLAISRRI 570

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           +   GG + ++S     +T    +
Sbjct: 571 VEQMGGAIDVTSKPGEGSTFRFSL 594


>gi|171060781|ref|YP_001793130.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778226|gb|ACB36365.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 801

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 22/369 (5%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +    + V V     RI L N     ++      +        +       +   
Sbjct: 17  LLARLLAIADDAVIVADAAQRIVLFNEGAERVFGYRLAEVLGQPLAMLLPEPARAAHAGH 76

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLP-NAQTML--TFVNVTDS 548
                 +A+      ER+ + G     +D VL   E SI  +  + QT       +V++S
Sbjct: 77  LRAFAQSALPARRMAERRDIHG---RRADGVLFDAEASISHVELDGQTYFAAILRDVSES 133

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A RAL         A+  K+ F+ ++S+E+R+PL  +IG T LL  +    ++ +Q  
Sbjct: 134 RQARRALERAKAEAEAAERAKSLFLANMSHEIRTPLNAVIGMTTLLMDT---PMSDEQLD 190

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +   I AS   LL ++NDILD +  D G +++      L   + +    +A +  E  + 
Sbjct: 191 FARTIRASGETLLGVINDILDFSKADVGKLEIEQQRFDLRRCVEDALDLVAPRALEKRLN 250

Query: 669 I-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN------GDFI 720
           +  +I DG   + V D  R+ QI + +LSNA+ F+ +G   VI+ +   +          
Sbjct: 251 LAYLIEDGTPENLVGDVTRIRQILANLLSNAVKFTHQGEVLVIIDSEPVDAGDGPLHRIH 310

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           F+V+++G  I  +    +F  F        R   G GLGL+I +    L GG VS+ S  
Sbjct: 311 FAVQDSGIGIAAEHLPRLFQSFTQVDASTTRKYGGTGLGLAISKRLAELMGGTVSVQSEP 370

Query: 779 EGVTTINCR 787
              +     
Sbjct: 371 GQGSVFRVS 379


>gi|187919994|ref|YP_001889025.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187718432|gb|ACD19655.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 776

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 162/384 (42%), Gaps = 27/384 (7%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T + +      T++  Q    +HLS+ + +    G I   N     +          G
Sbjct: 268 DITERKEA----QTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERML---------G 314

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVLEYSIIPL 533
             +R I       +   +          +      + +G L  +    S  V E  I PL
Sbjct: 315 YRMREILGKPVALFLPPEETLNIRREALAALAAEGTWRGELPFVRRDGSRGVCETVIKPL 374

Query: 534 PNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            NA+      +    ++T    AE+ LT  N  L KAD  K+ F+  +++ELR+PL  + 
Sbjct: 375 ANARGDIYGAVSINRDITGRRHAEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMR 434

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
              ++L+  +    + + S   +        + +LV+D+L+++ +  G ++L    + L 
Sbjct: 435 NVLEILRLKEFA--DPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGKLELRKQRLELA 492

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             +    ++    +  ++  + V    +    VAD  RL Q+   +L+NA  ++  G T+
Sbjct: 493 RAMQSAMEAARPTVQASSHHLSVTLPREPLYLVADPTRLSQMILNLLNNAAKYTPPGGTI 552

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
            L A RD  + +  V+++G  IP +   SVF  F   A      + G+G+GL++V     
Sbjct: 553 SLAAERDGDEAVIVVRDSGIGIPAEHLNSVFEMFSQLAPALDRSQGGLGIGLALVRGLAE 612

Query: 767 LHGGHVSISSS-DEGVTTINCRIP 789
           LHGG V+  S      +    R+P
Sbjct: 613 LHGGTVAAFSDGPGKGSEFVIRLP 636



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 75/280 (26%), Gaps = 29/280 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
              + +A      ++L     V  +         W  +      W +   +         
Sbjct: 136 NAEASVAAHQRAQRELQESRDVLSLAMRGARMGAWSHEPKSGKFWWSRELEALAGYAEGR 195

Query: 233 FQKAIGESRKL--------FKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKI 279
           F    G   +L          E +   + S       F    +      +E     +Y  
Sbjct: 196 FADTPGGFFELIHPGDLIALNEAVDHAVESGDDYVAEFRFLHASGDWCWMEGRGRATYD- 254

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
            R        G+ ID+++       L     I  +L+ AI I D    +   N     + 
Sbjct: 255 -RHGEPLTIYGLGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERML 313

Query: 340 EIDLAFLATNP-----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWH 393
              +  +   P       +E L   R A          TW+  +  V +       +T  
Sbjct: 314 GYRMREILGKPVALFLPPEETLNIRREALAA--LAAEGTWRGELPFVRRDGSRGVCETVI 371

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            P      +        G + +  ++T +   E +   L 
Sbjct: 372 KP------LANARGDIYGAVSINRDITGRRHAEQQLTRLN 405



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               +H + G+ V   DGRI   N  F      E   L+   HI+++ +   + + ++  
Sbjct: 12  DALFEHAACGLLVTDADGRILRVNATFCGWLGYESAELTGARHIQDLLSAGGKVFYQTHW 71

Query: 497 WDLFA 501
             L  
Sbjct: 72  APLLQ 76


>gi|28868897|ref|NP_791516.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852136|gb|AAO55211.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 917

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H  ++ +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|218248943|ref|YP_002374314.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218169421|gb|ACK68158.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 828

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 5/262 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L     ++   +VT+  R  + L  KN  L + + +K+ F+  +S+EL+SPLT ++G + 
Sbjct: 293 LGGEIYLVLATDVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSS 352

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL   K+G LN++Q  Y E I  S   L+ LVND+LDL  ++ G +KL++  + + ++  
Sbjct: 353 LLGEQKVGELNTRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICE 412

Query: 653 EVKQSIATKMHENN---IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
               SI  K        + I +  +  L   +AD  RL Q+   +L NAM F+     V 
Sbjct: 413 RAYHSIIEKYQSKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVG 472

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           ++ +R      F+V + G  IPE+    +F +F    +    +  G GLGL + +     
Sbjct: 473 IRVSRWENWIAFTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARA 532

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +S  S +   +     +P
Sbjct: 533 HGGDISFISKEGQGSQFTLLLP 554


>gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 653

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 148/322 (45%), Gaps = 24/322 (7%)

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSVLEYSIIPLPNAQTMLTFVNVTD 547
           Y  E++      ++  +   E K L   L   +  D V ++  + L  A+          
Sbjct: 103 YVVETNLIFFLGSLWVTEIHELKPLGLRLNHFAVHDRVSDF--LFLLQAKNTALNEAHKL 160

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +    + L    E    A+  K++F+ ++S+ELR+PL  I+GF+ LL  S+  +L +   
Sbjct: 161 ADERAQKLVAAKEMAESANLAKSTFLANMSHELRTPLNAILGFSQLL--SRDSTLTAAHL 218

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I+ S   LL L+NDIL+++ ++AG + L+ +   L+  L  +      K+    I
Sbjct: 219 HKLSIINNSGEHLLALLNDILEMSKIEAGQITLDPTNFNLHHFLEGLYNLFQQKVFSKKI 278

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD----- 718
            +K      +  ++ AD ++L Q+   +L NA+ F+++G     V  +   D+       
Sbjct: 279 NLKFQYSKTVPQYIQADIKKLRQVLINLLGNAIKFTNEGQVYLKVASRIYLDDAYSVNLQ 338

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHG 769
                  FSV++ G  + E+  + +F+ F    +  Q      G GLGLSI   F+NL G
Sbjct: 339 EPTCLLTFSVEDTGPGVSEEDQEKIFHPFYQTEYGKQSHQGVHGTGLGLSISRQFVNLMG 398

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +SISS      T +  IP K
Sbjct: 399 GELSISSQLNKGATFSFSIPVK 420


>gi|104773346|ref|YP_618326.1| two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422427|emb|CAI96976.1| Two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 631

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 161/424 (37%), Gaps = 41/424 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETID 441
            E  +    + +G  +  V + SN   G +   F  L+ +++    +  +  +     + 
Sbjct: 221 EELRQQAIQVADGDYSTQVKIYSNDELGQLGAAFNTLSTKIERSNEQSESERRRLDSVLS 280

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWD 498
           H+++GV      G + + N   +     +    +    I  +      Y ++   S+  D
Sbjct: 281 HMTDGVIATDRHGNVSIMNQMAQDFLDVKAED-AIKKPISQVLGLGEDYTSQDLISNQSD 339

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           +   +    DDE              +L  S   +      ++          E+     
Sbjct: 340 MQVTVNAGTDDE-------------MILHASFTLIKRVTGFVSGAVCVLHDVTEQ----- 381

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K ++ +  FV +VS+ELR+PLT++  + + L             Q+++     + 
Sbjct: 382 ----IKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKD-PEIAPQFLDVTQKETE 436

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---------ATKMHENNIRI 669
            ++ +VND+L L+ +D G  KL    +   D ++ +               +       I
Sbjct: 437 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 496

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K     +      D  +++++   I++NA+ +S  G T+ ++  ++    + S+ + G  
Sbjct: 497 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 556

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +F+RF          + G GLGL+I +  +  HGG +   S +   +T    
Sbjct: 557 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 616

Query: 788 IPSK 791
           +P +
Sbjct: 617 LPYE 620


>gi|168704913|ref|ZP_02737190.1| two-component system sensory histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 545

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 7/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    EA  +AD  K+ F+  VS+ELR+PLT IIG++++L          + +  ++ + 
Sbjct: 303 LRVAKEAAEEADRTKSGFLATVSHELRTPLTTIIGYSEMLLEQAAVDNLPQYTADLQQVH 362

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++   LL L+NDILD + ++AG +++         L++++  S+     +NN RI++   
Sbjct: 363 SAGQHLLALINDILDFSKIEAGKLEIANDPYAPASLIHDLMVSVEPLAKKNNNRIELDCP 422

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSI 730
             LG  + D  R+ Q    ++ NA  F+  G  V + A R           +V + G  +
Sbjct: 423 PDLGRAMGDPTRIRQCVLNLVGNACKFTRDG-LVKVTARRAPVSGVDSVQVAVSDTGIGM 481

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F  F         +  G GLGL+I +      GG +++ S     +T    I
Sbjct: 482 TPEQVGRLFQAFTQVDSTAGRKFGGTGLGLAISQRLCAAMGGQITVRSEPGKGSTFTMTI 541


>gi|300811608|ref|ZP_07092088.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497403|gb|EFK32445.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 635

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 162/424 (38%), Gaps = 41/424 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETID 441
            E  +    + +G  +  V + SN   G +   F  L+V+++    +  +  +     + 
Sbjct: 225 EELRQQAIQVADGDYSTQVKIYSNDELGQLGAAFNTLSVKIERSNEQSESERRRLDSVLS 284

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWD 498
           H+++GV      G + + N   +     +    +    I  +      Y ++   S+  D
Sbjct: 285 HMTDGVIATDRHGNVSIMNQMAQDFLDVKAED-AIKKPISQVLGLGEDYTSQDLISNQSD 343

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           +   +    DDE              +L  S   +      ++          E+     
Sbjct: 344 MQVTVNAGTDDEI-------------ILHASFTLIKRVTGFVSGAVCVLHDVTEQ----- 385

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K ++ +  FV +VS+ELR+PLT++  + + L             Q+++     + 
Sbjct: 386 ----IKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKD-PEIAPQFLDVTQKETE 440

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---------ATKMHENNIRI 669
            ++ +VND+L L+ +D G  KL    +   D ++ +               +       I
Sbjct: 441 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 500

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K     +      D  +++++   I++NA+ +S  G T+ ++  ++    + S+ + G  
Sbjct: 501 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 560

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +F+RF          + G GLGL+I +  +  HGG +   S +   +T    
Sbjct: 561 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 620

Query: 788 IPSK 791
           +P +
Sbjct: 621 LPYE 624


>gi|37520287|ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211280|dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 856

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 12/230 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN F+  +S+E+R+P+  +IG  D+L     G L  +Q   +E I AS   LL ++NDIL
Sbjct: 484 KNEFLATMSHEIRTPMNGVIGLADVLLAD--GGLTHRQRDSIETIRASGETLLTIINDIL 541

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D +  ++G ++L      L+ LL      +  +  + ++++     G++  + V D  RL
Sbjct: 542 DFSKAESGCIELETKRFDLHALLAGCVDLLRPEATQKHLQLCCTLHGQVPQAVVGDAARL 601

Query: 688 LQIFSKILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFN 740
            QI   ++ NA+ F++ G+  V + AAR   +        F+V++ G  IP +    +F 
Sbjct: 602 RQILVNLIGNAVKFTTSGAVSVNVTAARPAAEPPQKWELHFAVRDTGIGIPAERMDRLFK 661

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F        RR  G GLGL+I +    L  G + + S     +T +  I
Sbjct: 662 PFSQVDASTTRRYGGTGLGLAICKRLAELMDGRIWVESEPGRGSTFSFTI 711


>gi|325124951|gb|ADY84281.1| Putative histidine kinase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 635

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 161/424 (37%), Gaps = 41/424 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETID 441
            E  +    + +G  +  V + SN   G +   F  L+ +++    +  +  +     + 
Sbjct: 225 EELRQQAIQVADGDYSTQVKIYSNDELGQLGAAFNTLSTKIERSNEQSESERRRLDSVLS 284

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWD 498
           H+++GV      G + + N   +     +    +    I  +      Y ++   S+  D
Sbjct: 285 HMTDGVIATDRHGNVSIMNQMAQDFLDVKAED-AVKKPISQVLGLGEDYTSQDLISNQSD 343

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           +   +    DDE              +L  S   +      ++          E+     
Sbjct: 344 MQVTVNAGTDDE-------------MILHASFTLIKRVTGFVSGAVCVLHDVTEQ----- 385

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K ++ +  FV +VS+ELR+PLT++  + + L             Q+++     + 
Sbjct: 386 ----IKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKD-PEIAPQFLDVTQKETE 440

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---------ATKMHENNIRI 669
            ++ +VND+L L+ +D G  KL    +   D ++ +               +       I
Sbjct: 441 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 500

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K     +      D  +++++   I++NA+ +S  G T+ ++  ++    + S+ + G  
Sbjct: 501 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 560

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +F+RF          + G GLGL+I +  +  HGG +   S +   +T    
Sbjct: 561 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 620

Query: 788 IPSK 791
           +P +
Sbjct: 621 LPYE 624


>gi|153829186|ref|ZP_01981853.1| sensor protein TorS [Vibrio cholerae 623-39]
 gi|148875299|gb|EDL73434.1| sensor protein TorS [Vibrio cholerae 623-39]
          Length = 984

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L + Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTATQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRV 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFWFTLPL 691


>gi|116624972|ref|YP_827128.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228134|gb|ABJ86843.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 614

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 155/385 (40%), Gaps = 21/385 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +     +   +  D           +G +   N A  +L K+   ++        +A 
Sbjct: 221 ERELRDSERRYRDLFDRAPIPYEEMDRNGALHRFNQAVCTLLKSTPEQMIGRLAWDFVAP 280

Query: 486 TCSRYYNESDGWDLFAA------------------IITSFDDERKSLQGTLELLSDSVLE 527
                +  +    +                      +   ++  ++ +G +  +  S+L+
Sbjct: 281 DRQAEFRAAMKRRVLTGEESGPFECPYVLEDGTHLTVEIRENLIRNDRGEVTGIVRSLLD 340

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +   L             +       L    E  R A   K+ F+  VS+ELR+PL  I
Sbjct: 341 VTERNLAAVAARKVEQYALELRSKNEQLARALEGARAATVAKSRFLASVSHELRTPLNGI 400

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF++LL  +KLG L+ +Q + +  I  S+  LL L+NDILDL+ V+AG M+       L
Sbjct: 401 IGFSELLYDAKLGHLSGEQIEVMGDILTSARHLLQLINDILDLSKVEAGRMEFRPERSRL 460

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             L+ EV+  I       N+ +       L + + D  R  Q+    LSNA+ F+  G +
Sbjct: 461 QPLVFEVRDVIRPLAERKNLVLATEVPEDLVAHL-DPGRFRQVLYNYLSNAVKFTPAGGS 519

Query: 708 VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFI 765
           V ++ AR+    F   V++ G  I  +    +F  F    +  +  +G GLGL++    +
Sbjct: 520 VTVRIARERQLWFQLEVEDTGIGIAAEEIPRLFQEFSQLPNSRKADQGTGLGLALTRHIV 579

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG V++ S     +  +  +P 
Sbjct: 580 EAQGGSVTVRSELGRGSVFSALLPL 604


>gi|302670412|ref|YP_003830372.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302394885|gb|ADL33790.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1269

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 124/250 (49%), Gaps = 12/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA      +    R A+E K++F+ ++S+E+R+P+  ++G  +++        + K  +Y
Sbjct: 637 RATETARMEERRARAANEAKSNFLANMSHEIRTPINAVLGMNEVILRECK---DEKILEY 693

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  +   LL+L+NDILD + ++AG M++  +    + +LN+V   +  K  +  + +
Sbjct: 694 AQNIEGAGRTLLSLINDILDFSKIEAGSMEITEAEYDFSSVLNDVYNMVHIKAEQKILDL 753

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGD---FIFSV 723
           K   D  L  +   D  RL QI   +L+NA+ ++ +G  V L+A   RD GD       +
Sbjct: 754 KFDIDEDLPDTMYGDEMRLRQIIVNVLNNAVKYTEEGG-VTLEATGIRDYGDTITLKIKI 812

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I ++   ++F++F            G GLGL+I  S + L GG + + S     
Sbjct: 813 TDTGKGIKKEELPTLFDKFKRLDAEKNRTIEGSGLGLAITHSLLELMGGSIMVDSVYGKG 872

Query: 782 TTINCRIPSK 791
           +T    +P K
Sbjct: 873 STFTIVLPQK 882


>gi|229090538|ref|ZP_04221774.1| hypothetical protein bcere0021_13640 [Bacillus cereus Rock3-42]
 gi|228692805|gb|EEL46528.1| hypothetical protein bcere0021_13640 [Bacillus cereus Rock3-42]
          Length = 591

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|288957454|ref|YP_003447795.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909762|dbj|BAI71251.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 545

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 187/509 (36%), Gaps = 24/509 (4%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           ++    +         +L  + V I   D    + F N     +  +    L        
Sbjct: 32  IALAKLLRVSKARYRTLLEAVPVGILHADAGGRVLFVNSRLAGITGLSPDRLLG----AG 87

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV----TSNPRG 410
            L+ +   ++     +W+   E       +  +    +H P+G+     V     +   G
Sbjct: 88  WLDAVHPEDRARVAADWRI--EPAGEGRSAPRSTDFRFHDPDGEGAERRVLCQRVALEEG 145

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I    +++  V                +D ++E +      G +   N A  +++   
Sbjct: 146 GFIATVTDVSEYVHTANALRLSEARNEGILDTVAEAILTIDEAGILISFNRAAEAMFGVV 205

Query: 471 -----ENRLSPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDS 524
                   L     + ++        + + G  +       + + ER         LS S
Sbjct: 206 ADDVLWRPLGRLIPLADLLEAGGERLDFAPGQTMALVTRDRAAEAERADGTRFPVELSVS 265

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             E     L  A       +VT+  RAE  L     A    D  K++F+  +S+ELR+PL
Sbjct: 266 ASEVEGRRLYTA----ILRDVTERRRAEAELLAAKAAAEAGDRAKSTFIAVMSHELRTPL 321

Query: 585 TNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             +IGF+ LL+     +    Q    V+ I  +   LL +++DILD+A V++G + L+  
Sbjct: 322 NAVIGFSQLLELQAGDAAGDGQLLSCVDAIGQAGRRLLAIIDDILDMARVESGGLSLSEG 381

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + L  L+      +  +     + + V  DG L     D +RL Q    +LSNA+ FS 
Sbjct: 382 VVDLFALVERCVADLRFQATRQGVTVSVALDGDLPPLRGDWRRLGQALGNLLSNAIKFSH 441

Query: 704 KG-STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSI 760
            G    +  A  ++G    SV++ G  +  +        F     A      GVGLGL +
Sbjct: 442 PGAEVALAAAIAEDGWVELSVRDQGVGMRPEDIDRALAPFAQIDQAATHHHEGVGLGLPL 501

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  HGG + + S+     T   R+P
Sbjct: 502 ARRLVEAHGGVLRLDSAPGLGCTATLRLP 530



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 86/269 (31%), Gaps = 29/269 (10%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           +L +     K L    + ++ L +++   + H D  G +L+ N    +     G+   + 
Sbjct: 27  DLDDLIALAKLLRVSKARYRTLLEAVPVGILHADAGGRVLFVNS---RLAGITGLSPDRL 83

Query: 237 IGES-RKLFKEEIKKRMI-----------SSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
           +G         E + R+             S+    +F       E    +       L 
Sbjct: 84  LGAGWLDAVHPEDRARVAADWRIEPAGEGRSAPRSTDFRFHDPDGEGAERRVLCQRVALE 143

Query: 285 SFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
             G      DVS+ +   + L         IL  +  AI   D+   L   NR+   ++ 
Sbjct: 144 EGGFIATVTDVSEYVHTANALRLSEARNEGILDTVAEAILTIDEAGILISFNRAAEAMFG 203

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +    +   P    L+          E+L++   +     V +      +     +G   
Sbjct: 204 VVADDVLWRP-LGRLIPLADLLEAGGERLDFAPGQTMAL-VTRDRAAEAE---RADGTRF 258

Query: 401 HVIVT---SNPRGGTIW--MFENLTVQVD 424
            V ++   S   G  ++  +  ++T +  
Sbjct: 259 PVELSVSASEVEGRRLYTAILRDVTERRR 287


>gi|2439990|gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudomonas tolaasii]
          Length = 706

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L+ +   Y+  I
Sbjct: 66  ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRHVDYLGTI 122

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 123 EKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLV 182

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 + V D  RL QI + ++SNA+ F+ +G+ V      D  +       SV++ G 
Sbjct: 183 YRDTPLAVVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGI 242

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 243 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 302

Query: 787 RI 788
            +
Sbjct: 303 SL 304


>gi|52079393|ref|YP_078184.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52784753|ref|YP_090582.1| hypothetical protein BLi00981 [Bacillus licheniformis ATCC 14580]
 gi|319646826|ref|ZP_08001055.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52002604|gb|AAU22546.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347255|gb|AAU39889.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391414|gb|EFV72212.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 674

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 111/572 (19%), Positives = 228/572 (39%), Gaps = 80/572 (13%)

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ------LTHTYE 310
           A E      VS  E G      + R +     +  A+ VS    + ++      L   +E
Sbjct: 147 AQEGAANAPVSGGEDGQLHLQHLYRTVKELEASNDAL-VSANQKLQEENRKLTALNRAFE 205

Query: 311 ---------------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                          +L +  +A    DQ   L+        ++++    L+        
Sbjct: 206 KKVNELNTLKNDMNNLLTSTNIAAVFLDQELKLKLFTPEAANMFDLKNEDLS-------- 257

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRG 410
               R A+KL E+  ++ + +++      ++T    + +P+G    V +       N   
Sbjct: 258 ----RPADKLTERFKYEGYADDLRRTLYENKTVVKEFEMPDGGWYAVKMIPYYTSGNMVE 313

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G +  F N+T         N  + +  + ID     + +   DG +  +N  F  ++   
Sbjct: 314 GIVVTFTNVTELKMT----NEALHISSQAIDQSPANILITSVDGSVTYANKRFCRMFGKH 369

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL----ELLSDSVL 526
           ++ +  G    N+     ++++  D    +  ++     E+K   G L    E   D   
Sbjct: 370 QDDIIGG----NVFDIYRKHFHCEDLTRFWKRVL-----EKKPWSGELNYQDEEQQDRWE 420

Query: 527 EYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           + S++P+ ++     Q ML   ++T+  R+E+ L  K+E L    ++       +++E+R
Sbjct: 421 QISLVPVEDSAGNVQQVMLISEDITNQKRSEKML-MKSEMLSAVGQL----AAGIAHEIR 475

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT++ GF  L+  SK       Q  Y E + +    L  ++N+ L LA   +      
Sbjct: 476 NPLTSLKGFLQLMIQSKKY-----QKDYAEVMMSEFIRLEAIINEFLVLAKTKSNTFD-- 528

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + +N ++ +V   + ++   NN+RI+    G L   +A    L Q+F  IL NA++ 
Sbjct: 529 --PVQVNSIVEDVCMVLESQAVLNNVRIEKQLSGDLPEILAVSNELKQVFINILKNAIEA 586

Query: 702 SSK-GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
                  + +++  +      + ++ G  I +++ + +   F       + +G GLGL +
Sbjct: 587 MEDAEGFITIRSYFEKDSVFITFEDQGKGISKEVLEKLGEPFY----TTKEKGTGLGLMV 642

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               I  HGG +   S +   T +  ++P KE
Sbjct: 643 TFKIIENHGGSIHFESEEGKGTIVKLKLPIKE 674


>gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
           4166]
          Length = 914

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E  E     +E K+ F+  +S+E+R+PL  ++G   LL+ +    L+  Q  Y++ IS+
Sbjct: 396 REAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRET---PLDRSQQFYLDTISS 452

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
           S   L+ ++NDILD A + +G + L      L  L++E  +    +  E  + + V +  
Sbjct: 453 SGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLHVGLEP 512

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI 730
           G       D  RL QI   +LSNA+ F+  G  ++  ++R   D     +F V ++G  +
Sbjct: 513 GVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEVSSRQTQDGSRRLVFCVSDSGIGM 572

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +++   +F  F        RR  G GLGL+I +  + +  GH+ + S+    +     I
Sbjct: 573 RQEVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEI 632

Query: 789 PS 790
           P 
Sbjct: 633 PL 634


>gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1792

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 128/278 (46%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1297 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1356

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L  KQ ++ E I  + + LL L+NDILDL+ VDAG M ++ + I L  L++ V+ 
Sbjct: 1357 NADANLTPKQVEFAETIHGAGSDLLQLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEA 1416

Query: 657  SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            +      E  + + V +S G   +   D QRLLQ+   +LSNA+ F+  GS  ++++ AR
Sbjct: 1417 TFRPLSAEKGLDLSVRVSPGLPATMHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPAR 1476

Query: 715  DN--------------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
            D                         FSV + G  I     + +F  F         +  
Sbjct: 1477 DEVPTAIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYG 1536

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +   S     +T    +P 
Sbjct: 1537 GTGLGLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPL 1574


>gi|167645203|ref|YP_001682866.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
 gi|167347633|gb|ABZ70368.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
          Length = 579

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 154/359 (42%), Gaps = 11/359 (3%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            + +    +D   + + V   +GRIK    A      T          +   +   +   
Sbjct: 196 ELNILQALVDGAPQLLLVISSNGRIKTVRGAAPRGVAT----------LALTSEGLASAA 245

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
              D   + AA++ + D    S+     L     +   +  +     +    + T     
Sbjct: 246 VAGDRQKVSAALVAALDGGEASVSFAPLLDPTRTVCLDLRQVSPDMLVGVMRDATIDKAR 305

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL +           +  F+ ++S+ELR+PL  I+GF+D+++    G L  +  +Y E
Sbjct: 306 ETALQQARAEAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLTDRYGEYAE 365

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   LL+L+ND+LD++ ++A   +L        + +    + +  +     ++++ 
Sbjct: 366 LIHESGRHLLDLINDVLDMSKIEAERFELQRGEFDAREAVTAAMRLLRVQADAAGVQLRG 425

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +         ADR+ L QI   ++SNA+ F+ +G  V + A   +G+F   V + G  I 
Sbjct: 426 VLPPTDLEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTADGHDGEFELVVADTGVGIS 485

Query: 732 EDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + +   +       QR +G GLGLS+V +F  LHGG + I S     T+++ R+P
Sbjct: 486 PEDLERLGRPYEQAGGVDQRAKGTGLGLSLVRAFAKLHGGEMHIESRMGAGTSVSVRMP 544


>gi|78779823|ref|YP_397935.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9312]
 gi|78713322|gb|ABB50499.1| multi-sensor signal transduction histidine kinase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 689

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 156/390 (40%), Gaps = 47/390 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  + L++ E   L     +  I   
Sbjct: 289 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKYFLNEIPEI 348

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            S   +     +         DD R SL     TL ++  SVL+ + + L          
Sbjct: 349 LSNDLHT--NIESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAV----- 401

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  +N F+ +VS+ELR+PL NI  + + L   K    N
Sbjct: 402 -TIQDLTREVEL----------NAAQNRFISNVSHELRTPLFNIKSYVETLHDLKDQLSN 450

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G + +    + +   + +  ++      
Sbjct: 451 EEQLEFLGIANSETDRLTRLVNDVLDLSRLESGKI-IQLEEMDIKAAIEQTLRNYRLNAT 509

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           E N+ +    +  +   + +   LLQ+F  +L N + FS K S ++++A           
Sbjct: 510 EKNVSLAHDIEENIPPILGNFDLLLQVFDNLLGNGLKFSPKNSNLMIRAYAWPDSCPAFP 569

Query: 718 ------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGL 758
                                  + + GS I +   + +F+RF    +     +G GLGL
Sbjct: 570 PSKQNDRAPQCELVSPLPKVRIEIADTGSGISQTDQEKIFDRFFRVENAVHTEQGTGLGL 629

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           SIV   I  HGG + ++S     TT    +
Sbjct: 630 SIVRGIIEKHGGEIRMASELGIGTTFWFDL 659



 Score = 46.5 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D    +   N +   L+  +  FL      +
Sbjct: 284 DEANIEELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKYFLN 343

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           E+ E L +        +  T  E+I +  K  +  + +   P  +TL +++ S       
Sbjct: 344 EIPEILSN--------DLHTNIESILNREKEKDDLRFSLGEP-ARTLRIVLQSVLDTNKV 394

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    N  +
Sbjct: 395 ELKGIAVTIQDLTREVELNAAQNRFI 420


>gi|313496503|gb|ADR57869.1| KinB [Pseudomonas putida BIRD-1]
          Length = 588

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 150/372 (40%), Gaps = 24/372 (6%)

Query: 422 QVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +    T  + L+   +     +D + +G+ +    GR++  NP  +      +       
Sbjct: 236 RKHQATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWND------- 288

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537
               + ++        +       ++     +R      +E+  +  +L YS+ P+ + Q
Sbjct: 289 --SRVGSSLVEALQRPELEQQLRQVLRGGSLDRPPDDLNMEVDEESRLLTYSLTPVSHPQ 346

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    +      E+            + +++ FV   S+ELR+P+T +     LL+  
Sbjct: 347 GPILGAVMVLHDVTEQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLRER 397

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 ++++  +E I      L  L+ND+L+ +   +G+ KL  +   ++DLL   +  
Sbjct: 398 VKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLEHAQLR 457

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A +     I +    D  L    AD  +L ++   +L NA+  ++ G  + L A R   
Sbjct: 458 FAEQAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHAE 517

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I SV++NG  I       +F  FV      ++ G GLGL++ +  + LHGG + + S 
Sbjct: 518 RVIISVEDNGEGISYGQQARIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVFSR 575

Query: 778 DEGVTTINCRIP 789
               T     +P
Sbjct: 576 PGQGTQFYMALP 587



 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 66/198 (33%), Gaps = 28/198 (14%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            + F + I+    ++  L K   +    +        ++ ++   FG    A+   +   
Sbjct: 187 ARRFGQPIEALAKAADQLGKGDFDVTLPVAQAA----ELNQLTRRFGLMADALRKHQATN 242

Query: 301 VNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           V++ L        +L ++   + I D+   L+  N                  ++  +  
Sbjct: 243 VDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQR---------QLGWNDSRVGS 293

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSS-----ETHKDTWHLPNGQTLHVIVTSNPRG-- 410
            L  A + PE            S+ +       E  +++  L    T  +   S+P+G  
Sbjct: 294 SLVEALQRPELEQQLRQVLRGGSLDRPPDDLNMEVDEESRLL----TYSLTPVSHPQGPI 349

Query: 411 -GTIWMFENLTVQVDLET 427
            G + +  ++T Q   E 
Sbjct: 350 LGAVMVLHDVTEQRAFER 367


>gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01]
 gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01]
          Length = 1058

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+    +  +   KA + K+SF+ ++S+E+R+PL  +IG +++L  +   SL + Q  Y
Sbjct: 382 QAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---SLTATQRDY 438

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   I+ K  E  I +
Sbjct: 439 VDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDV 498

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVK 724
           +V          + D  R+ Q+    +SNA+ F+ +G    S +  +         FSVK
Sbjct: 499 QVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITREIKNGEAVIEFSVK 558

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I     K +F  F    +   R   G GLGL+I    + L GG + + S     +
Sbjct: 559 DSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGS 618

Query: 783 TINCRI 788
                +
Sbjct: 619 RFFFEL 624


>gi|325685238|gb|EGD27356.1| sensor histidine kinase VicK [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 631

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 162/424 (38%), Gaps = 41/424 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETID 441
            E  +    + NG  +  V + SN   G +   F  L+V+++    +  +  +     + 
Sbjct: 221 EELRQQAIQVANGDYSTQVKIYSNDELGQLGAAFNTLSVKIERSNEQSESERRRLDSVLS 280

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWD 498
           H+++GV      G + + N   +     +    +    I  +      Y ++   S+  D
Sbjct: 281 HMTDGVIATDRHGNVSIMNQMAQDFLDVKAED-AIKKPISQVLGLGEDYTSQDLISNQSD 339

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           +   +    DDE              +L  S   +      ++          E+     
Sbjct: 340 MQVTVNAGTDDE-------------MILHASFTLIKRVTGFVSGAVCVLHDVTEQ----- 381

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K ++ +  FV +VS+ELR+PLT++  + + L             Q+++     + 
Sbjct: 382 ----IKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKD-PEIAPQFLDVTQKETE 436

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---------ATKMHENNIRI 669
            ++ +VND+L L+ +D G  KL    +   D ++ +               +       I
Sbjct: 437 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 496

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K     +      D  +++++   I++NA+ +S  G T+ ++  ++    + S+ + G  
Sbjct: 497 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 556

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +F+RF          + G GLGL+I +  +  HGG +   S +   +T    
Sbjct: 557 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 616

Query: 788 IPSK 791
           +P +
Sbjct: 617 LPYE 620


>gi|302768056|ref|XP_002967448.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii]
 gi|300165439|gb|EFJ32047.1| hypothetical protein SELMODRAFT_169013 [Selaginella moellendorffii]
          Length = 628

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 11/238 (4%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              +    AD+ K+ F+ ++S+E+R+PL  II  T+L   ++    +++Q +Y+E +  S
Sbjct: 1   MAKDVAVAADKAKSEFLANMSHEIRTPLNGIINCTELCLDTQ---TSTEQQEYLELVRFS 57

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  LL ++ DILD + ++AG +++      L D L      +A + H+ N+ +   +D  
Sbjct: 58  AKHLLRIITDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARAHKKNLELAWSADAD 117

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSIP 731
           +    V D  RL Q+F  ++ N + F+  G  V+L       ++  + +FSV + G  IP
Sbjct: 118 VPDQIVGDPGRLFQVFVNLIGNGIKFTEDGEVVVLAKLQNKTKETVELLFSVNDTGVGIP 177

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           ++    +F  F        R   G GLGL I        GG + + S     +T    
Sbjct: 178 KNKQSLLFQAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGRMWVESE-GQGSTFYFT 234


>gi|171317076|ref|ZP_02906280.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171097777|gb|EDT42601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1093

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 17/310 (5%)

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            SR ++  D W     + TS+D +R      L +L+  +    ++ L      L    + 
Sbjct: 503 ASRMHSLRDRWQFSRQVRTSWDRQR------LRILTIVLGTLLMVVLFLVWNYLLRKEIR 556

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              RAE  L    E    A   K++F+  +S+E+R+P+  ++G  +LLK S+       Q
Sbjct: 557 LRKRAEGDLAAAIEVAEDASRAKSTFLATMSHEIRTPMNAVLGVLELLKQSRGTI--ESQ 614

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S  ++    S+  LL+L+ DILDL+ +++G ++L    I  + L+  V         + +
Sbjct: 615 SASIDAAYDSAHALLSLIEDILDLSKIESGKLELAPEPIDCDALVRSVANVFEGLARQRH 674

Query: 667 IRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFI 720
           +   V  D  +  S   D  RL QI S +LSNA+ F+  G  V L+A     A+D     
Sbjct: 675 LLFSVSIDNPRRLSVTIDPIRLRQILSNLLSNAVKFTHTGG-VSLEAMLRADAQDQVHIE 733

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             VK+ G  I     + +F  FV        +  G GLGL+I    + L GG +++ S+ 
Sbjct: 734 LRVKDTGIGIAAGEQEKLFQPFVQADRTIGAKFGGSGLGLAICRRLVELMGGALTLKSTP 793

Query: 779 EGVTTINCRI 788
              TT+   +
Sbjct: 794 GVGTTVEVSL 803


>gi|91224005|ref|ZP_01259268.1| sensor protein LuxQ [Vibrio alginolyticus 12G01]
 gi|91190916|gb|EAS77182.1| sensor protein LuxQ [Vibrio alginolyticus 12G01]
 gi|188039120|gb|ACD47122.1| LuxQ [Vibrio alginolyticus]
          Length = 858

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 157/398 (39%), Gaps = 32/398 (8%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F+++   ++    +     +   +  +     + V+   G +   NPA R   
Sbjct: 331 EGSDIEEFDHIGSTLENTFEELEAQKRSFRDLFNFALSPIMVWSESGVLVQINPAARK-- 388

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                 L     +  +      +  +       AA       +  +L G    + D V  
Sbjct: 389 -----ELVMENDVETMHPVFKGFKEKLMPHLRMAA-------QGATLTGVNVPIGDKVYR 436

Query: 528 YSIIPLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ P+      +  ++   ++T  + AE+      +   K+ + +  F+  +S+E+R+P
Sbjct: 437 WNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARKEAEKSAQARADFLAKMSHEIRTP 496

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   LLK S       +Q+  ++ +  S   LL ++NDILD + ++ G   +   
Sbjct: 497 INGILGVAQLLKDSV---ETEEQNNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKH 553

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFS 702
                D +  ++           + + + +          D+ RL QI   ++SN++ F+
Sbjct: 554 PFSFTDTIRTLENIYRPICESKGVNLVIENKIDPNVEIFTDQVRLNQILFNLVSNSVKFT 613

Query: 703 SKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
             GS V L A        DN   +  + + G  I  D    +F  FV       R   G 
Sbjct: 614 PSGS-VRLHAELEQFYGADNSVLVVEISDTGIGIESDKLDQMFEPFVQEEATTTREYGGS 672

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+IV+S +++  G V + S     TT    +P K+
Sbjct: 673 GLGLTIVKSLVDMLEGDVQVRSQKGLGTTFVITMPVKD 710


>gi|330958947|gb|EGH59207.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 1186

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 167/390 (42%), Gaps = 21/390 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            WM + +  +   E   +   +     +D     + V   +G +++ N ++ + +     
Sbjct: 542 AWMRQQIRQREAAERALSDQFEFMSALVDGTPHPIYVRDRNGLLRMCNDSYLTTFSARRE 601

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   +    +          +  +    A  T+   +R    G  +L     + + I+P
Sbjct: 602 DIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPMRIGDRQL----TIYHWILP 657

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++       +  ++++++  +    L    E    A   K++F+  +S+E+R+P+  +
Sbjct: 658 FRDSLGEVQGIIGGWIDISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAV 717

Query: 588 IGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IG  +L LK +  G L+      +E    S+  LL+L+ DILD+A +++G + LN     
Sbjct: 718 IGMLELALKRADHGELD---RPAIEVAYGSANELLDLIGDILDIARIESGRLALNPERAN 774

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L   V +       + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G
Sbjct: 775 LRQLAESVVRVFDGLARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTRCG 834

Query: 706 ST-VILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
              + L+A             +V+++G  I  +  + +F  F    + GQ  R G GLGL
Sbjct: 835 QVKISLQAPDTPDPQQLHVHLTVQDSGIGISVEDQRRLFEPFAQADNTGQMARTGAGLGL 894

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  S   + GG +S+ S     T IN ++
Sbjct: 895 VICRSLCTMMGGSLSLDSEPGIGTRINMQL 924



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + LS+       L D     ++ RD+ G +   N SY     T     
Sbjct: 544 MRQQIRQREAAERALSDQFEFMSALVDGTPHPIYVRDRNGLLRMCNDSYL---TTFSARR 600

Query: 234 QKAIGESRK--LFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKS---YKIVRVLN 284
           +  IG+S    +     + R  ++         T   L+     G+ +    + I+   +
Sbjct: 601 EDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPMRIGDRQLTIYHWILPFRD 660

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   + ++L    E     + A + F
Sbjct: 661 SLGEVQGIIGGWIDISERRQLIEELQAAKEQADAASRAKSTF 702



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 82/269 (30%), Gaps = 26/269 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  ++DQ      ++      I + D+N  L+  N S++  +      +    + + +
Sbjct: 553 AAERALSDQFEFMSALVDGTPHPIYVRDRNGLLRMCNDSYLTTFSARREDIIGKSATEGV 612

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L     A +                + +          +     L    +     G I  
Sbjct: 613 LGNAFEAREYAADYQRVMASNTALILDRPMRIGDRQLTI-YHWILPFRDSLGEVQGIIGG 671

Query: 416 FENLTVQVDLETKYNTLVKVQGET-------IDHLSEGV-----AVFG-------PDGRI 456
           + +++ +  L  +     +            +  +S  +     AV G            
Sbjct: 672 WIDISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHG 731

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY----NESDGWDLFAAIITSFDD--E 510
           +L  PA    + +    L     I +IA   S         ++   L  +++  FD    
Sbjct: 732 ELDRPAIEVAYGSANELLDLIGDILDIARIESGRLALNPERANLRQLAESVVRVFDGLAR 791

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +K L   LEL S    +  I PL   Q +
Sbjct: 792 QKDLDLVLELDSRINTDVLIDPLRFKQIL 820


>gi|294498311|ref|YP_003562011.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348248|gb|ADE68577.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 917

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 149/326 (45%), Gaps = 27/326 (8%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            IA         ++     +  + +  +E +     L ++++ + E         +T   
Sbjct: 427 EIARLLKESQAMTEELQAQSEELQTQSEELQMQSEELRMINEQLEE---------RTKDA 477

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +   A+  L EK   L    + K+ F+ ++S+ELR+PL +I+  +++L+ +   +
Sbjct: 478 EEKSFELEAAKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEMLEENAAKT 537

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+  + +Y   I +S   LL L+NDILDL+ V++G + +  + + +++L ++++++ +  
Sbjct: 538 LSEDEEEYARIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPDQIERNFSHV 597

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             +  +++K+     + + +  D +R  QI   +LSNA  F+  GS V +   R      
Sbjct: 598 AEQKKVQLKINKAQDVPNIIHTDEKRFQQIVKNLLSNAFKFTESGS-VTVSIQRVADHRL 656

Query: 719 ------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
                          +V + G  IP++  + +F  F         +  G GLGLSI   F
Sbjct: 657 TTAMRTVDTDCWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTGLGLSICSEF 716

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
             L GG +S+SS     +T    +PS
Sbjct: 717 AKLLGGWISLSSEVGKGSTFTLYLPS 742


>gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16]
 gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16]
          Length = 870

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 6/242 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  L E  E    A++ K+ F+ ++S+E+R+PL  IIG T++L  S+   LN  Q + + 
Sbjct: 363 QTKLVEAKEHAEAANQAKSVFLANMSHEIRTPLNGIIGMTEILSDSQ---LNGSQKEILN 419

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I ASS  LL L+NDILDL+ +++G + L+  T  L +++ +    +  +  +  + ++V
Sbjct: 420 DIDASSHALLVLINDILDLSKIESGNLVLSPHTANLREIIFDTMNMVNAQALKQEVTLEV 479

Query: 672 ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                +  +   D  R+ QI   +LSNA+ FS+ GS ++  +          V + G  I
Sbjct: 480 EFADDVPVYAEMDEFRVKQILMNLLSNAIKFSANGSVLVRHSVDTQHRLNIEVLDTGVGI 539

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             D    +F  F        RR  G GLGL+I    + L  G + + S+    +     +
Sbjct: 540 AADKLSDIFKPFTQEDGTITRRFGGTGLGLAICRQLVELMRGELVVESNVGEGSRFTVIL 599

Query: 789 PS 790
           P 
Sbjct: 600 PL 601


>gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UTI89]
 gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89]
 gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           IHE3034]
 gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252]
 gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263]
          Length = 949

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 IEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1311

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 111/228 (48%), Gaps = 7/228 (3%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            +E+K  F  ++S+ELR+PLT II   + L   +      KQ   ++ I  ++  LL+LVN
Sbjct: 805  EEMKYRFFTNISHELRTPLTLIIAPLESLLKKEENPDTRKQ---LKTIDRNAHNLLSLVN 861

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
             +LD   ++     L   T  L D+L+ + +S      E NIR       +     AD  
Sbjct: 862  QLLDFRRIEMKGETLALETFNLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLITADSP 921

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNR 741
            ++ ++ + +LSNA  F+ +G  V LKA  +  D     +  V+++G  IP +  + +F R
Sbjct: 922  KIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPAEEQEHIFER 981

Query: 742  FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            F          G G+GL++ + ++ LH G + +SS     +    RIP
Sbjct: 982  FYQANSHKDNTGSGIGLNVAKEYVQLHNGKIEVSSVPGKGSCFTVRIP 1029


>gi|152972133|ref|YP_001337279.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238896716|ref|YP_002921461.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150956982|gb|ABR79012.1| aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase, sensor for arcA [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238549043|dbj|BAH65394.1| aerobic respiration sensor-response protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 779

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 23/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K     ++Q           +D   + V     D      N A   L    E 
Sbjct: 134 EQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 193

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 194 QLIHLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 248

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 249 YYDRVGKRRGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++   L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 307 ILLDTE---LTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLA 363

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++
Sbjct: 364 DLENLSGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVR 423

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD + F V+++G  IPE     +F  +         +   G G+GL++       
Sbjct: 424 VRYDEGDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARN 483

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG +S++S      T    
Sbjct: 484 MGGDISVTSQPGKGATFTLT 503



 Score = 44.9 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 17/152 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +L+ +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T  
Sbjct: 131 TTLEQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGK 190

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV- 280
                Q    + + ++ EE  ++++ +   EK F   VS           G    ++I  
Sbjct: 191 S--EKQLIHLKPQDVYSEEAAEKVLETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRK 246

Query: 281 -----RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                RV    G  G   D+++     D L  
Sbjct: 247 VPYYDRVGKRRGLMGFGRDITERKRYQDALER 278


>gi|163801498|ref|ZP_02195397.1| putative two-component sensor [Vibrio sp. AND4]
 gi|159174987|gb|EDP59787.1| putative two-component sensor [Vibrio sp. AND4]
          Length = 641

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/318 (23%), Positives = 147/318 (46%), Gaps = 24/318 (7%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS----- 548
           ++    F  I+       + +   L+LLS +V ++S   +P+   +       +      
Sbjct: 155 AEAIKTFLLILAVLWVTFRLIVKPLQLLSGAVSDFSGGYVPSKVQLPKRWFFDEVSLLEY 214

Query: 549 ---------VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                       +  + E  +    A+  K+ F+  +S+E+R+P+  I+G   LL  +K 
Sbjct: 215 KYNLSVERVRERQVEIEEARDKAEVANRKKSEFLATMSHEIRTPMNGIVGIASLLNDTK- 273

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+ +Q   V  I++SS  L+ +++DILD + ++AG ++L  +   L DLL+EV +   
Sbjct: 274 --LDKQQKDLVNVINSSSHSLMVIIDDILDFSKIEAGKIELEVTHYNLFDLLSEVGRLHT 331

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-- 716
            K  + ++++    D +L      D  RL Q+ + +L+NA+ F+ +G   +L +      
Sbjct: 332 VKAQQKSLQLVCDIDPQLPLEVEGDVGRLKQVLNNLLTNAVKFTERGYVKLLVSQVSRRG 391

Query: 717 --GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
              + +F V ++G  I ++  ++VF +F         +  G GLGL+I    I + GG +
Sbjct: 392 RVANVLFRVVDSGIGIAKENQQAVFEKFQQADGSTMRKYGGTGLGLAICSRLIEVMGGKI 451

Query: 773 SISSSDEGVTTINCRIPS 790
            ++S     +     IP 
Sbjct: 452 LLTSELGLGSCFEFTIPL 469


>gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1838

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 139/311 (44%), Gaps = 26/311 (8%)

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            +    DE ++ Q  L+  +  + E +   L   Q     V  T+   A + L E+ E L 
Sbjct: 1288 LRERSDELENRQKALQAANAELEEKA--ELLAQQNRDIEVKNTEIEEARQVLEERAEQLA 1345

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ E I  + + LL L
Sbjct: 1346 VSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADENLSPKQVEFAETIHGAGSDLLQL 1405

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
            +NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  +   
Sbjct: 1406 INDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHT 1465

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KAARDNGDFI-F 721
            D QRLLQ+   +LSNA+ F+  G+  ++                         +GD I F
Sbjct: 1466 DEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGTDVPPAIREQLLEAGSLREADGDLIAF 1525

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            SV + G  I       +F  F         +  G GLGLSI      L GG +  +S   
Sbjct: 1526 SVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPG 1585

Query: 780  GVTTINCRIPS 790
              +T    +P 
Sbjct: 1586 RGSTFTLYLPL 1596


>gi|16127421|ref|NP_421985.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221236230|ref|YP_002518667.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424865|gb|AAK25153.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220965403|gb|ACL96759.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 642

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 97/481 (20%), Positives = 174/481 (36%), Gaps = 40/481 (8%)

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
           ++  +   N ++ +L               E+ +F    +         T K    +  +
Sbjct: 33  RDSRIIRANPAWSQLTGWAAEDTLGR----EIRDFFHLHDTEVLTAAGHTLKTVGHAHSE 88

Query: 384 SSETHKDTWHLPNGQTLHVIVTSN--PRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           +    K       G  L V   S     GG + +F++++     E       +   E + 
Sbjct: 89  NRLARK------GGGWLWVRTQSTILEGGGQLIVFQDISEDRAREAA-RLQAERSNELLR 141

Query: 442 HLSEGVAVFGPDGRIKLSNP-----AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           + + GV V+         NP     AF     T       G     +A      + E   
Sbjct: 142 N-AAGVYVW-------RFNPRRGVYAFDQDIPTPSAP-EGGARTMTVAEMTQSIHPEDSA 192

Query: 497 WDLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
               A   T    E   +    L+  +D  +   +       +     +V    +    L
Sbjct: 193 RVWQAFSRTLQTGEHVEIDYRYLDPGADDWIHLHVAWRGVRGSSPDTYDVIGITQNVTEL 252

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               +A   A E K+ F+ ++S+E+R+P+  ++G   LLKT K   L+    + +    +
Sbjct: 253 VAARDAALAAAETKSQFLANMSHEIRTPMNGVLGVLHLLKTEK---LSDDGRRLLTEALS 309

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
              +L  L+NDI+D + ++AG ++L+   +   +LL  V   +  +     + ++V +  
Sbjct: 310 CGEMLSALLNDIIDFSKIEAGKLELSAEPVCPAELLRGVADMLRAQAETKGLYLRVEASD 369

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG------DFIFSVKNNGS 728
            LG    D  RL Q    ++ NA+ F+ +G  V  L   R +          F + + G 
Sbjct: 370 DLGWVATDPLRLRQALFNLIGNAVKFTLEGGVVARLSGRRIDSPDGARLRLRFEIDDTGV 429

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F RF        RR  G GLGL+I      L GG V   S     +T   
Sbjct: 430 GIGEEAGARLFERFRQGDGSTTRRFGGSGLGLAICRRLAELMGGEVGFESQLGKGSTFWL 489

Query: 787 R 787
            
Sbjct: 490 E 490


>gi|295087981|emb|CBK69504.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 503

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 86/366 (23%), Positives = 171/366 (46%), Gaps = 20/366 (5%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            L++     +++++ G+A    D  ++  N +  S   + E           +    +  
Sbjct: 3   QLIRQNELVLNNINSGLAYIANDYIVQWENISLCSKSLSYEAYKKG-----ELCYLTAHN 57

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNV 545
                   +      S   E         L +  V+E    P+ N Q      ++   +V
Sbjct: 58  RTTPCENCVMQRARRSGQVE----SILFNLDNKHVIEVFATPIFNEQGDVDGVVIRVDDV 113

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+       L        ++D++K++F+ ++S+E+R+PL  I+GF+DLL    +     +
Sbjct: 114 TERQHMIGELETARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLM---VTEDQEE 170

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           + ++++ I+A++ +LL L+NDILDL+ ++AG ++L Y    L    NE+  S+  ++   
Sbjct: 171 KEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMHRRVVNP 230

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +R+  ++  +  +   D+ RL QI +  ++NA+ ++SKG T+ +   + +GD    V++
Sbjct: 231 QVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG-TIEMGYEKIDGDIRLYVRD 289

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IPED    VF+RF       Q  G GLGLSI ++ +    G +   S  +  +   
Sbjct: 290 TGIGIPEDKKDKVFHRFEKLDEFAQ--GTGLGLSICKAIVEACRGEIGFESEFDKGSLFW 347

Query: 786 CRIPSK 791
             +P +
Sbjct: 348 AVLPCQ 353


>gi|289677061|ref|ZP_06497951.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae FF5]
          Length = 654

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|170690462|ref|ZP_02881629.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170144897|gb|EDT13058.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 1202

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 128/247 (51%), Gaps = 3/247 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +RA+  L    E L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q
Sbjct: 467 DLLRAQDDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQ 526

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ ++  L  +++         +
Sbjct: 527 VRYAETIHASNSDLLVLINDILDLSKVEAGQVNVELETVSIDATLQSLEELFKPLAGAKH 586

Query: 667 IRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +      G   + V+D QR+ QI   +LSNA+ F++ G   +  A  D+      V++
Sbjct: 587 LSLVFDRLPGVPDTMVSDGQRVTQILRNLLSNAVKFTAHGEVALSVAPADDDMLRIDVRD 646

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  IP D  + +F  F         Q  G GLGLSI   F  L GG ++++S     + 
Sbjct: 647 SGIGIPADKLEMIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVASEVGKGSV 706

Query: 784 INCRIPS 790
               +P 
Sbjct: 707 FTLWLPL 713


>gi|229195777|ref|ZP_04322537.1| hypothetical protein bcere0001_13410 [Bacillus cereus m1293]
 gi|228587674|gb|EEK45732.1| hypothetical protein bcere0001_13410 [Bacillus cereus m1293]
          Length = 591

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|225872588|ref|YP_002754043.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792000|gb|ACO32090.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 477

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 148/376 (39%), Gaps = 34/376 (9%)

Query: 420 TVQVDLETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           T    LE  ++ L   Q E    +D + E V     D  +  SN   + +          
Sbjct: 129 TTASRLEQSFHALESKQRELAALLDSMQEAVIAVDADSLVSWSNTVMQRIAPG------- 181

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                                D+ A +  + +           +L D V E +  P P+ 
Sbjct: 182 ------AIREGRALVQTIRDPDVLACVQGALEHREIRSAKARSVLPDHVFEVNAAPTPDG 235

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +VT   RAE               ++  FV +VS+ELR+PLT+I G+ + L  
Sbjct: 236 GAVAVLHDVTGIERAEI--------------MRRDFVANVSHELRTPLTSISGYVETLLD 281

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L     +++  I  ++  +  L  D+L LA V++G  +L+   I  + LL +  +
Sbjct: 282 T-TPDLPPHVQEFLGIILKNANRMNRLTEDLLALANVESGEYQLHRQPIAASALLEDTIE 340

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +A  + ++   +K   +      + D   + Q+F  ++ NAM +   G +V + A   +
Sbjct: 341 GLAGMLVDSGFLLK-QRETTNTKVLVDIDAITQVFGNLIENAMKYGRTGQSVTVGARDCD 399

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  I ++    +F RF         +  G GLGL+I    +  H G + +
Sbjct: 400 GCVEFYVQDYGPGIAQEHQARIFERFYRVDKARSRESGGTGLGLAIARHIVLAHEGTIHV 459

Query: 775 SSSDEGVTTINCRIPS 790
            S      T   R+P+
Sbjct: 460 ESELGSGATFIVRLPA 475


>gi|149277932|ref|ZP_01884071.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
 gi|149231130|gb|EDM36510.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
          Length = 1147

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 94/492 (19%), Positives = 190/492 (38%), Gaps = 29/492 (5%)

Query: 306  THTYEILHNLTVAIAIF-DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 ++   T+ I +       +Q  N+++ +L   +   L      D + E   +  K
Sbjct: 539  QRFRNLIREATIGIILLSGPELTVQIVNKAYGDLIGRNTDELLGKSLFDIIPEAAGAFRK 598

Query: 365  LPEQLNWKTWKENIFSVYK---SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
            + E +       +++  Y      +T  + +   N        T     G + + +++T 
Sbjct: 599  VIEPVMTTGRPVSLYDQYYFVNKDDTRIEGYL--NLTYQPYRETDGEVTGVLVLCQDVTA 656

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            QV  +       +     ++ + + V    PDG++   N    +           G    
Sbjct: 657  QVRDQQLLEAGERRFQFMLNSIPQQVWTALPDGKLNYVNQVVAA---------DFGRSAE 707

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             I       +   D  DL A+I+      +++L+   E L++  L ++        T   
Sbjct: 708  EIIGQGWEAFVHPD--DLPASIL----GWQEALESGKEYLAEFRLRFADGAYLWHLTRAV 761

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  ++          E  ++ ++ K+ F+   S+EL++PLT I  F  L+K      
Sbjct: 762  PFVEDGNITVWLGTNTNIELQKQNEQRKDEFLSIASHELKTPLTGIKAFNQLMKRHD--- 818

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              S+   YVE    +   L  L+ND+LD+  ++AG +  +      + +L +  +S+   
Sbjct: 819  -PSRIGVYVEKSGENIQRLEKLINDLLDVTKINAGKLTYDLKPFDFSGMLADSVESVQLT 877

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               + I ++         +  DR RL Q+ +  L+NA+ +S   + V +    + G    
Sbjct: 878  SSTHQIILE---KPDQLEYNGDRLRLEQVVTNFLTNAVKYSPDANQVQINCWVEEGGVFV 934

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV++ G  I +   + +F+R+    +   R  G+GLGL I    +  H G   I S    
Sbjct: 935  SVRDFGIGIQDQHIQRLFDRYYRIDNTSMRFEGLGLGLFISAEILKRHMGTFWIESEPGE 994

Query: 781  VTTINCRIPSKE 792
             +T   R+P  +
Sbjct: 995  GSTFYFRLPLVQ 1006


>gi|307545605|ref|YP_003898084.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
 gi|307217629|emb|CBV42899.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
          Length = 911

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 145/320 (45%), Gaps = 12/320 (3%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +   + + +R         L   +   F    + L    + L+++  +         Q
Sbjct: 175 QPLEEASESLARLAAGMTPEPLPMPVEAEFVQLVQRLNTLRDHLANAHDDLQTQVEQATQ 234

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +   +    E  L  +      A+  K+ F+ ++S+E+R+PL  IIGF  LL  S
Sbjct: 235 ELQESMETIEVQNIELDLAHRR--ALDANRAKSEFLANMSHEIRTPLNGIIGFCRLLHRS 292

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   LN++Q ++++++  +   LL LVND+LD + ++AG ++L +  + +  L++EV   
Sbjct: 293 E---LNARQREWLDHVRRACDNLLMLVNDVLDFSKIEAGRLELEHRPLDMVALVDEVLGL 349

Query: 658 IATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            A +  + N+++  ++ D   G    D  R+ Q+ + ++ NA+ F+ +G  ++  +  D 
Sbjct: 350 QAPQAQQKNLQLLGLVYDDVPGELFGDPLRIRQVLTNLVHNAVKFTDRGEVIVRVSVEDT 409

Query: 717 GD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                    SV + G  + +   + +F+ F       QR   G GLGL+I    +   GG
Sbjct: 410 SHNQTTLNVSVSDTGIGLSQACQRQLFDAFRQGETSHQRQFGGTGLGLAICRQLVEQMGG 469

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +S+ S     +T    +P 
Sbjct: 470 EISVDSESGQGSTFFFTLPL 489


>gi|75907783|ref|YP_322079.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75701508|gb|ABA21184.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 443

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 115/236 (48%), Gaps = 4/236 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L +A  +K+ F+  +S+ELR+P+  IIGF+ +L   K G+L  +Q+  VE I  +  
Sbjct: 164 NLKLLEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGNLTGQQADMVERILNNGK 223

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+N++LD + ++ G ++L      L  ++N     + +      + + V  D +  
Sbjct: 224 HLLMLLNEVLDFSKLEEGRLELKPELFDLTKVINAAVAEMRSLAEAKKLSLLVQIDLQNP 283

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
             V D  R+ QI   +LSNA+ F+  GS + +      G ++   VK+ G  I     K 
Sbjct: 284 LLVNDPVRIKQILINLLSNAIKFTDSGS-IWIDVKDLPGSWVEIRVKDTGIGIASKDFKY 342

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F        R+  G GLGL+I++S + +  G + + S     +     +P +
Sbjct: 343 IFEAFRQVDQSITRKYAGTGLGLAIIDSLVQMMSGKIILESQLGVGSIFTITLPRQ 398


>gi|323491808|ref|ZP_08096983.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323313943|gb|EGA67032.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 850

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 154/371 (41%), Gaps = 26/371 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + N   K   +  +     V ++   G +   NP+        E           +  +
Sbjct: 349 KRLNEQEKQFTDLFNFSLSPVTLWNTAGDLSRFNPSA-------ERSFRTSASRELLIES 401

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
              +            I T+  ++      +  +  +SV          AQ M    ++T
Sbjct: 402 LKPHILMCAQGATLTGINTTIVNKTYRWNLSPIVTDNSV----------AQIMAQGQDIT 451

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             + AE+      E   ++  ++  F+  +S+ELR+PL  I+G + LLK      ++ + 
Sbjct: 452 SFIEAEKQSQAAREEAEESARMRADFLAKMSHELRTPLNGILGVSQLLKDKM---VDQRD 508

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++VE +  S   LL ++NDILD + ++ G   +      L +L N V++     + + N
Sbjct: 509 IEHVEVLCNSGEHLLAVLNDILDFSKIEQGQFHIESEPFRLVELTNTVERIFKPLLDDKN 568

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIF--S 722
           +  +V++      +  +D+ RL QI   ++SNA+ F+  GS TV L         +    
Sbjct: 569 VAFEVVNKIPHDKWANSDQVRLNQIIFNLVSNAVKFTHHGSVTVTLGCQHQESGCLLNLD 628

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I +     +F  FV       R   G GLGL+IV+S + + GG + + S  + 
Sbjct: 629 VVDTGIGIEQHRLSHIFEPFVQAEANTTREYGGSGLGLAIVQSLVTIMGGEIKLESEVDV 688

Query: 781 VTTINCRIPSK 791
            T  + RIP +
Sbjct: 689 GTRFSVRIPLE 699


>gi|269966421|ref|ZP_06180506.1| sensor protein LuxQ [Vibrio alginolyticus 40B]
 gi|269829008|gb|EEZ83257.1| sensor protein LuxQ [Vibrio alginolyticus 40B]
          Length = 858

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 157/398 (39%), Gaps = 32/398 (8%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F+++   ++    +     +   +  +     + V+   G +   NPA R   
Sbjct: 331 EGSDIEEFDHIGSTLENTFEELEAQKRSFRDLFNFALSPIMVWSESGVLVQINPAARK-- 388

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                 L     +  +      +  +       AA       +  +L G    + D V  
Sbjct: 389 -----ELVMENDVETMHPVFKGFKEKLMPHLRMAA-------QGATLTGVNVPIGDKVYR 436

Query: 528 YSIIPLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++ P+      +  ++   ++T  + AE+      +   K+ + +  F+  +S+E+R+P
Sbjct: 437 WNLSPIRVDGDISGIIVQGQDITTLIEAEKQSNLARKEAEKSAQARADFLAKMSHEIRTP 496

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G   LLK S       +Q+  ++ +  S   LL ++NDILD + ++ G   +   
Sbjct: 497 INGILGVAQLLKDSV---ETEEQNNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKH 553

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFS 702
                D +  ++           + + + +          D+ RL QI   ++SN++ F+
Sbjct: 554 PFSFTDTIRTLENIYRPICESKGVNLVIENKIDPNVEIFTDQVRLNQILFNLVSNSVKFT 613

Query: 703 SKGSTVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
             GS V L A        DN   +  + + G  I  D    +F  FV       R   G 
Sbjct: 614 PSGS-VRLHAELEQFYGADNSVLVVEITDTGIGIESDKLDQMFEPFVQEEATTTREYGGS 672

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+IV+S +++  G V + S     TT    +P K+
Sbjct: 673 GLGLTIVKSLVDMLEGDVQVRSQKGLGTTFVITMPVKD 710


>gi|163814592|ref|ZP_02205981.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
 gi|158450227|gb|EDP27222.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
          Length = 528

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 118/250 (47%), Gaps = 4/250 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +     R + E  + L +++E + SF+ ++S++ RSPLT+I G+ + +    +     
Sbjct: 242 NNEFGELARYMEEMADELSRSNEYRKSFISNISHDFRSPLTSIKGYIEAMLDGTIPL--E 299

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +  +Y+  +   +  L  L   +L+L   D+  ++L+ S   + D++     +   +  +
Sbjct: 300 RHEKYLGIVLNEAQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTVNTFEKRCQD 359

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             I ++ +         ADR ++ Q+   ++ NA+ F+ +G  + ++    +     SVK
Sbjct: 360 RGIFLESVFLTDNTIVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVTEKDNKIFISVK 419

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP+D  K VF RF          + G GLGL+I +  I  HG  ++++S +   +
Sbjct: 420 DEGIGIPKDAQKKVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITLTSEEGKGS 479

Query: 783 TINCRIPSKE 792
                +P ++
Sbjct: 480 EFIFSLPKEK 489


>gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701]
 gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701]
          Length = 549

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 160/391 (40%), Gaps = 46/391 (11%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                +  + + + +   +GR++ +N AF          L  G                 
Sbjct: 3   RLEAALSSVEDALVLTDFNGRVEWTNRAF---------NLFVGQSRLLSLGRLLDDLLPP 53

Query: 495 DGWDLFAAIITSFDDERKSLQGTL-----ELLSDSVLEYSIIPL---PNAQTMLTFVNVT 546
              D          D  +   G+L           V+E    P+   P+   +  F ++T
Sbjct: 54  HFIDGIQETPRDLLDGARLGPGSLLWDLTPTPPRRVVEVKWSPVNLKPDPSLVFVFRDLT 113

Query: 547 DSVRAERALTEKNEALRKADEIKN------------------SFVQHVSYELRSPLTNII 588
           +  RA+  +T+  + L +    +                    F+  +S+E+R+PL  +I
Sbjct: 114 EITRAQDQITKARDTLEQDVAARTLELQLARDEALAATGAMGQFLSTISHEIRTPLNAVI 173

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G +DLL  +   SL+ +Q + V  I++S+ +LL L+NDILDL+ ++A  MK++  T  L 
Sbjct: 174 GMSDLLLDT---SLDGQQQELVHTINSSAELLLRLINDILDLSKIEARKMKISSETFSLR 230

Query: 649 DLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L+ +  + +   +    + ++   SD    + + D  R+ QI   +L+NA+ F+S GS 
Sbjct: 231 SLVLDCCRMMDAAVRAKRLELRCSFSDDPPDALIGDGLRIRQIVLNLLNNAIKFTSHGSV 290

Query: 708 -VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSI 760
            V +         I     V + G+ I ED    +F  F      AH     G GLGL+I
Sbjct: 291 DVKIGWRPLTSSAIELDLVVADTGTGISEDFLSKIFQDFTQEHNQAHASHHHGTGLGLAI 350

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +    L GG +   S     +  + R+P K
Sbjct: 351 CDRLCRLMGGSIEAVSQLGQGSRFHVRLPLK 381


>gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82]
          Length = 949

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSVESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|330842920|ref|XP_003293415.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum]
 gi|325076250|gb|EGC30052.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum]
          Length = 947

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 135/287 (47%), Gaps = 21/287 (7%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYEL 580
           +++ +II +    T+     + ++ R  +     LT   +A  +A + +  F+  +S+E+
Sbjct: 511 IIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQLTIAKDAAIEAYQARQEFLATMSHEI 570

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  +IG   LL+ S   +L  ++    + + +   ILL LVNDILDL+ ++A  M L
Sbjct: 571 RTPLNGLIGMATLLRDSH--NLPPEEKTMAKAVKSCGDILLRLVNDILDLSKLEANQMGL 628

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
            +    + +L  ++   ++ + +E  I++      K+  + V D  R+LQI   +  NA+
Sbjct: 629 EHIPFKMRELTQQICHVLSGQANEKGIQLACEVSDKIPATLVGDSGRILQILMNLTGNAL 688

Query: 700 DFSSKGST-VILKAARDNGDFI----------FSVKNNGSSIPEDMCKSVFNRFVSNA-- 746
            F+  G   +I+    +  + +          F +K+ G  +P +  + +F  FV     
Sbjct: 689 KFTQSGYVKIIVDLIEEESELVSSRKGEYNISFRIKDTGIGVPVESHQKIFEAFVQADPS 748

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE-GVTTINCRIPSKE 792
              +  G GLGL +    + L  G + + ++ +   +T    IP +E
Sbjct: 749 DSRKYGGSGLGLYLCAKLVKLMKGEIGVYNNPDCEGSTFWFIIPLEE 795


>gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
 gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
          Length = 949

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRTDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|300117495|ref|ZP_07055285.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298725330|gb|EFI65982.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 591

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
             IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|153871596|ref|ZP_02000728.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
 gi|152071937|gb|EDN69271.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
          Length = 565

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 2/237 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E   + +E KN F+   +++LR+PL  I+G+  +L+   L  L+ +Q  Y+  I 
Sbjct: 302 LYTHLEEANRQNERKNQFLGMAAHDLRNPLGVILGYGQMLQEEALEILDEEQLDYLNRIH 361

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S   LNLVN++LD+A +++G + L      L   + E             I++    D
Sbjct: 362 NASQFTLNLVNNLLDVAKIESGNLALELEQTCLMRTITEAISLNRFLAESKQIQLNFNYD 421

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D  ++ Q+ + ++SNA+ +S   + V + A R   D + SV + G  IP+  
Sbjct: 422 ENLPEMTVDASKIQQVINNLISNAIKYSHPQTKVQIHATRKQNDVLISVTDEGQGIPKSE 481

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F  F   + +        GLGL I    +  H G + + S     +T    +P
Sbjct: 482 LDKLFQPFSKTSVKSTAGESSTGLGLLICRQIVEAHSGKIWVESEVGVGSTFYVLLP 538


>gi|86608466|ref|YP_477228.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557008|gb|ABD01965.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 587

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 10/249 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + L +       A+++K+ F+ + S+ELR+PL  IIGF  L+      +   ++  +
Sbjct: 301 QKNKELEQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIKLVLDGMAEN-REEELDF 359

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++    S+  LL L+ND+LD+A ++AG M+L +    L  L  +V+   + +  +  +++
Sbjct: 360 LQEAYRSALHLLALINDVLDIAKIEAGKMQLEFQPCDLRALFKDVEAKTSLQASQKGLQL 419

Query: 670 KVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVK 724
                        + D QRLLQ+   ++ NA+ F+ KGS V ++A    G+       V 
Sbjct: 420 SFHLPNTSDQILLLGDYQRLLQVMLNLVGNAIKFTPKGS-VTVRADILPGNPGLARIRVI 478

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-V 781
           + G  +  +  + +F  F        R   G GLGL+I +  +   GG ++  S  EG  
Sbjct: 479 DTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYSLGEGLG 538

Query: 782 TTINCRIPS 790
           +T+   +P 
Sbjct: 539 STVTFTVPL 547


>gi|282918087|ref|ZP_06325837.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           D139]
 gi|282318372|gb|EFB48732.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           D139]
          Length = 608

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 153/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 286 RIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 343

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 344 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++           +         K      D  ++ Q+F  +++
Sbjct: 443 SDQINKEIIDFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 37.6 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +           D +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGM--------AKEDII 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++   +  +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|323528028|ref|YP_004230180.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385030|gb|ADX57120.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 1197

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 3/247 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +RA+  L    E L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q
Sbjct: 467 DLLRAQDDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQ 526

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ L+  L  +++         +
Sbjct: 527 VRYAETIHASNSDLLVLINDILDLSKVEAGQVSVELETVSLDATLQSLEELFRPMAGAKH 586

Query: 667 IRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +      G   S V+D QR+ QI   +LSNA+ F+ +G   +  A  D+      V++
Sbjct: 587 LNLVFDRLPGAPDSIVSDGQRVTQILRNLLSNAVKFTERGEVALSVAPADDDMLRIDVRD 646

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I  D  + +F  F         Q  G GLGLSI   F  L GG ++++S     + 
Sbjct: 647 SGIGIASDKLEMIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVASEVGKGSV 706

Query: 784 INCRIPS 790
               +P 
Sbjct: 707 FTLWLPL 713


>gi|266622772|ref|ZP_06115707.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288865477|gb|EFC97775.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 1116

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/530 (17%), Positives = 197/530 (37%), Gaps = 50/530 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             +  Q  +   + + +   IA+        L   NR  + L  +       N +  +L+
Sbjct: 313 RKLRSQAGYIAHLYNAIPEGIALMSVEAPYRLLQLNREGMRLLHVQEE----NSNGKQLI 368

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLH----VIVTSNPRG 410
           +F+          ++    +   +       H  ++     +G        V  T N  G
Sbjct: 369 DFVH-------PDDYPMVADIFRAAAGDDRKHSFENRVVREDGSFFWSGGLVEKTLNEDG 421

Query: 411 G--TIWMFENLT-VQVDLETKYNTLVKVQGETIDHLSEGVAVF------GPDGRIKLSNP 461
               I  F ++T  ++  E      ++ +   I  +S    V                 P
Sbjct: 422 TPILIATFHDITMEKLAEEEAEREKLQERRMLISAISNVFPVIISLNLTSDTLNFIYLQP 481

Query: 462 AFRSLWKTEENRLSPGTHIRNIAAT------CSRYYNESDGWDLFAAIITSFDDERKSLQ 515
              +    +E+                     +R   E+    L ++    F + R  L 
Sbjct: 482 GLLAEMGGQESFSRLYQDFMEAVHPDFQEDFRNRLSPENLKKTLGSSRQEVFLEARILLT 541

Query: 516 GTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
                 + + + Y   P    Q     +        +  +  +AL    E+ + A   K+
Sbjct: 542 DGQYHWTSTQIIYVENPYSGDQLAILLSRRIDEQKHEEEQHRQALQSALESAKAASVAKS 601

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+++R+P+  I+G T +  +        +  + +  I+ SS+ LL+L+NDILD+
Sbjct: 602 RFLSNMSHDIRTPMNAIMGMTAIAASHMDDQ--ERVRECLRKINLSSSHLLSLINDILDM 659

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQ 689
           + +++G + L        +L+ EV + I  +    ++ + + + D K      D  R+ Q
Sbjct: 660 SKIESGKISLRDEPFNFAELVAEVAELIRPQADAGHLDMNLSLMDLKDELVAGDPLRVRQ 719

Query: 690 IFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           I   +LSNA+ ++ +G  + ++        R+  +FIF   + G  +  +    +F  F 
Sbjct: 720 ICFNVLSNAVKYTPEGGHISVRLYQRDSGRREYQNFIFECSDTGLGMSPEFLDKLFLPFE 779

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   R  G GLG++I ++ +++ GG + + S     +     +P +
Sbjct: 780 RVQDSTHSRVTGTGLGMAITKNIVDMMGGDIQVESELGEGSAFTVTLPLR 829


>gi|153870045|ref|ZP_01999526.1| two-component system sensor histidine kinase/response regulator
            [Beggiatoa sp. PS]
 gi|152073490|gb|EDN70475.1| two-component system sensor histidine kinase/response regulator
            [Beggiatoa sp. PS]
          Length = 1258

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 35/286 (12%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            + +T     +  +  ++ + L    E    A+  K++F+  +S+ELR+PL  I+GF  ++
Sbjct: 740  SEKTEELMQSHQELAQSYQQLETAKEKAEVANRAKSTFLASMSHELRTPLNAILGFAQIM 799

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              S   +L ++    +  I+ S   LL+L+ND+LD++ ++AG + L+     L  LL+E+
Sbjct: 800  HRS--STLPTEHRDNLNIINRSGNYLLSLINDVLDMSKIEAGKITLDEQNFDLYRLLDEI 857

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                  K     ++++V     L  ++  D ++L Q+   ++SNA+ F+  G  V L A 
Sbjct: 858  YDLFYLKAESKQLQLQVERSDHLPRYIRTDGKKLRQVIINLISNALKFTQDGG-VSLYAD 916

Query: 714  R-----------------------DNGDF-------IFSVKNNGSSIPEDMCKSVFNRFV 743
            +                       D  D         FSV + G+ + ++    +F  F 
Sbjct: 917  KIASNTSGEVPPPSGRRLRGGKNPDGEDVNTEITTLHFSVADTGAGVAQEEMDKLFEAFS 976

Query: 744  SNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              A  R  + G GLGL I   F  L GG++ + S     T     I
Sbjct: 977  QTATGRASQEGSGLGLPISRQFTQLMGGNIQVRSEVGKGTVFEVTI 1022


>gi|330503212|ref|YP_004380081.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328917498|gb|AEB58329.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 656

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 11/253 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+   SLN +
Sbjct: 263 QEQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETT---SLNDE 319

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           QS+Y    + S+  LL ++NDILD + ++ G ++L      L +LL    Q       + 
Sbjct: 320 QSEYAALATESTEHLLKVINDILDFSRIERGALELEAIPFNLLELLQGSIQVFQHSAQQR 379

Query: 666 NIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF 721
            +++ + +   L       D  R+ QI   ++ NA+ F+ +G   +    +  D+    F
Sbjct: 380 GLQLLLDAQPGLERLEVRGDPTRIRQILVNLIGNALKFTEEGHIRVETHWQPLDDQVLWF 439

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V+++G  I  +  + +F+ F         +  G GLGL I  +     GG +   S 
Sbjct: 440 TCAVRDSGIGIDGERLEHMFDAFQQADTSISRRYGGTGLGLPIARTLAERMGGTLRAESQ 499

Query: 778 DEGVTTINCRIPS 790
               +     IP 
Sbjct: 500 LGKGSVFTLEIPL 512


>gi|302877992|ref|YP_003846556.1| PAS/PAC sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302580781|gb|ADL54792.1| PAS/PAC sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 640

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 107/637 (16%), Positives = 229/637 (35%), Gaps = 58/637 (9%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS----YKKNTETEGIVFQKAIGESRK 242
           +L     + + + D    ++  +D  G  L  N +    Y    E        A   + +
Sbjct: 19  ELVRAYDLLRTVIDENPNIILMKDWDGKFLIGNRALANLYGTTPENLEGKDDGAFNPNAE 78

Query: 243 LFKEEIKK-RMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVS 296
                ++  R I S    +   E  +    G    Y+     +V          IA DV+
Sbjct: 79  QVAFYLQNVREIMSQPATQIVMEESTNNATGETHYYQSIKKPLVSADGKKQILVIANDVT 138

Query: 297 K----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +    +  + +       +L      +  +D    +  HN  + ++  +D  +L      
Sbjct: 139 ELKLAQKKLEESERRLRYVLDATGEGVWDWDIKSGIVTHNSQWCKIAGMDDNYL--QHPV 196

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSN 407
           +E  + L   ++      +   +  +         H+    +P  + + V     +V  +
Sbjct: 197 EEFGQLLHEDDR---ARVFDALQNCLNGHGHYQSEHR--MRMPGNRIVWVLDRGDVVERD 251

Query: 408 PRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
             G     +  F ++T + ++E       ++     +   +G   F     I   +PAF 
Sbjct: 252 SEGTALRMVGSFVDITKRKEIELALGVRTELLDAIFELSPDGFISFDEAHCISYVSPAFT 311

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LS 522
            +      +L  G +    +   +R       +     +     D+    +  +EL  + 
Sbjct: 312 RMTGLHAAQLQ-GMNEAQFSDLLTRLCVAGTHFKGVQKLRAPASDKLPDTRQIIELSHVG 370

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             +LE  +     +           +   E             D++K+ F+   ++ELR+
Sbjct: 371 KRILEVGLRSSTTSSVSQILYFREITHETE------------LDQLKSEFLSTAAHELRT 418

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLN 641
           P+ +I GF +LL +         + +++  I   S ++ +++N++LDLA ++A       
Sbjct: 419 PMASIYGFAELLLSHDFD--EESRREFLTIILKQSELMTSILNELLDLARIEARRGKDFV 476

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +    L+ +V +S    + E      +   G     +AD ++  Q    +LSNA  +
Sbjct: 477 IEILPAQALITQVVRSF--ILPEGRRAPALKMPGTTVFLMADHKKTYQAIVNVLSNAYKY 534

Query: 702 SSKGSTVILKAARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           SS    V ++   +              + + G  +  +    VF RF      G+  G 
Sbjct: 535 SS--GEVNIELINEPQPASLSTAAVGIRIIDCGIGMTPEQQSRVFERFYRADSSGKITGT 592

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLG+SIV+  + LHGG V++ S+    T++    P++
Sbjct: 593 GLGMSIVQEIVLLHGGQVTLESTIGKGTSVTLWFPAE 629



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 18/204 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           I +++ E  L  KKL       + + D+    VW  D    I+  N  + K    +    
Sbjct: 133 IANDVTELKLAQKKLEESERRLRYVLDATGEGVWDWDIKSGIVTHNSQWCKIAGMDDNYL 192

Query: 234 QKAIGESRKLFKEEIKKRMISSSA----LEKNFCETVSTLEHGNNKSY-----KIVRVLN 284
           Q  + E  +L  E+ + R+  +         ++         GN   +      +V   +
Sbjct: 193 QHPVEEFGQLLHEDDRARVFDALQNCLNGHGHYQSEHRMRMPGNRIVWVLDRGDVVERDS 252

Query: 285 SFG---EAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVE 337
                   G  +D++K   +   L    E+L  +          FD+   + + + +F  
Sbjct: 253 EGTALRMVGSFVDITKRKEIELALGVRTELLDAIFELSPDGFISFDEAHCISYVSPAFTR 312

Query: 338 LWEIDLAFLAT--NPSNDELLEFL 359
           +  +  A L         +LL  L
Sbjct: 313 MTGLHAAQLQGMNEAQFSDLLTRL 336


>gi|83858886|ref|ZP_00952408.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853709|gb|EAP91561.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 570

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 11/233 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+ ++S+E+R+PL  ++G T +L  SK   L+ +Q + VE I  S   LL+ +N
Sbjct: 181 NQAKSQFLANMSHEIRTPLNGVLGMTAVLALSK---LDERQRKAVEVIRMSGDHLLSTLN 237

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF---VA 682
           DILDLA +DAG M +     VL D+  +++   A +  +  +   +  +  + +    V 
Sbjct: 238 DILDLAKIDAGQMDVETVEFVLGDVAEQIEALYAPQAEKAGLSFSLRYEQGVSAHSLRVG 297

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFN 740
           D  RL QI   ++SNA+ F+ KG  V L  A+D    + I  V++ G  +  D  + VF 
Sbjct: 298 DPTRLSQIVHNLVSNALKFTRKGG-VRLSFAQDEDTEELILRVRDTGCGMTVDQLERVFM 356

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F        R   G GLGLSIV+  + +  G + + S  +  T     +P +
Sbjct: 357 PFTQADASTSREYGGTGLGLSIVKRLLEVMKGRIDVESEPDVGTLFTVYLPFR 409


>gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella dysenteriae Sd197]
          Length = 949

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 247/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I    +       A+           L  
Sbjct: 165 VERDTALKALHERINKYRDAPQDDSGSNLYWISEGPHPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1046

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 163/404 (40%), Gaps = 11/404 (2%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           GQ   +++   PR        ++ V+  L       + +   T D +  G    G    +
Sbjct: 187 GQLWEIVIRPEPRIVRGLDAAHVAVESALGESPARELLLAPVTADGVVNGALELGRTTHL 246

Query: 457 -------KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
                  +L       +             I  +  T  +        +         ++
Sbjct: 247 ANQELALELMRRCAEKIGIALRTARLRAELIELLEETQRQSEELQAQQEELRVANEELEE 306

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           + ++LQ +   L +   E     +    +T          + A   L      L  A   
Sbjct: 307 QSRTLQQSQANLEEQQAELEATNVQLEERTHELEAQRQYLIAARDDLLRSRAELAAASRY 366

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL + +    LL  ++ G+LN +Q +Y   I +++  LL L+NDIL
Sbjct: 367 KSEFLANMSHELRTPLNSALILARLLAENREGTLNEEQVKYARAIHSANNDLLALINDIL 426

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           DL+ ++AG ++L   T+    L+  ++++      +  + +++ I+ G    F+AD QRL
Sbjct: 427 DLSRIEAGHVELVDETLHTPQLVERLRETFEPLAQQKGLELRMEIAPGAPAQFLADGQRL 486

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +L+NA+ F+  GS  +       G   F+V + G  I  +  + +F  F     
Sbjct: 487 QQVLKNLLANAVKFTEHGSVALCIEGHGEGRIRFAVSDTGIGIAREQTEVIFEAFRQADG 546

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              RR  G GLGL+I        GG +++ S     +     +P
Sbjct: 547 STSRRFGGTGLGLAISRDLAERMGGSLTVESEPGRGSCFTLELP 590


>gi|17229338|ref|NP_485886.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130936|dbj|BAB73545.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 680

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 154/385 (40%), Gaps = 28/385 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +     +           G+      G  K +NP ++++   +         + ++ + 
Sbjct: 146 AELRQSEERFRSLSTCSPIGIFETDTAGCCKYTNPRYQAICGLDATESLDKRWLESVHSE 205

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLT 541
                  S    ++     S +   +++ G+L       ++    P+ +        + T
Sbjct: 206 DQERAIASWSTYIYQGGDYSDEFRFQTVDGSL-----RWVQVRSSPMLSGNGELLGYVGT 260

Query: 542 FVNVTDSVRAER------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             ++T   ++E             +     + +K+ F+  +S+ELR+PLT+++G++ +L+
Sbjct: 261 LEDITARKQSEEIRAQVIREQTARQEAEATNRMKDEFLAVLSHELRTPLTSMLGWSKILR 320

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             KL       ++ +E I  ++   + L+ DILD++ +  G ++LN S + L  ++    
Sbjct: 321 AKKLD--EKATARALEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLITVVEAAL 378

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +++       N+ I  + D  L     D  RL QI   +L+NA+ F+ K   V ++    
Sbjct: 379 EAVRPLADTKNMTINTVLDYTLSPVSGDFARLQQIVWNLLTNAIKFTPKEGQVEIRLEGI 438

Query: 716 NGDF-------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           NG+           V + G  I  +    VF RF        R   G+GLGL+IV   + 
Sbjct: 439 NGELSDDLTHAQIQVIDTGVGIASEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVE 498

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LH G +   S       T   R P 
Sbjct: 499 LHNGTILAESPGVGKGATFTVRFPL 523



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 94/277 (33%), Gaps = 45/277 (16%)

Query: 295 VSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
            ++   +N +L  + E   +L     + I   D     ++ N  +  +  +D        
Sbjct: 138 AAQLAAINAELRQSEERFRSLSTCSPIGIFETDTAGCCKYTNPRYQAICGLDATESLDKR 197

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-- 408
             + +       +   ++    +W   I+     S+  +  +   +G    V V S+P  
Sbjct: 198 WLESV-------HSEDQERAIASWSTYIYQGGDYSD--EFRFQTVDGSLRWVQVRSSPML 248

Query: 409 -----RGGTIWMFENLTVQVDLETKYNTLVKVQ-----GETIDHL-SEGVAVFGPDGRIK 457
                  G +   E++T +   E     +++ Q      E  + +  E +AV   + R  
Sbjct: 249 SGNGELLGYVGTLEDITARKQSEEIRAQVIREQTARQEAEATNRMKDEFLAVLSHELRTP 308

Query: 458 LSN-------------------PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           L++                    A  ++ +   +++     I +++         +    
Sbjct: 309 LTSMLGWSKILRAKKLDEKATARALEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPV 368

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               ++ +  +  + L  T  +  ++VL+Y++ P+  
Sbjct: 369 NLITVVEAALEAVRPLADTKNMTINTVLDYTLSPVSG 405


>gi|150392433|ref|YP_001322482.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149952295|gb|ABR50823.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 599

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 162/395 (41%), Gaps = 28/395 (7%)

Query: 402 VIVTSNPRGGTIW-MFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V + S+   G +  MF  L  ++  +  + +   +     I ++++G+     +G++  +
Sbjct: 220 VEIKSDDEIGQLGNMFNYLMARLKSVLQEMSNEKQKMDTIITYMADGLIATTMEGKVIHA 279

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-- 517
           NP    + + +E  +              ++++E+         I    +      G+  
Sbjct: 280 NPRALEMLRIQEKDI------------LEKHFDETFKQLNERLTIEYLQNSPAKWSGSQM 327

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E+     L  +  P  N +  L  + V         L +      K + ++  FV +VS
Sbjct: 328 IEMEYGITLRANYAPYMNEKGDLDGIIV---------LFQDVTEYEKLENMRKEFVANVS 378

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++PLT I  +T+ L    + +      Q++  I   +  +  LV D+L L+  D   
Sbjct: 379 HELKTPLTTIKSYTETLLEGAMEN-QELGKQFLNVIDNEADRMARLVRDLLQLSNADYQQ 437

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            K +   + LN ++ +   +++         +      +  S  AD  R+ Q+   ++SN
Sbjct: 438 TKWDKKEVDLNYIVEKAVLNLSVSAKNKEQELNYKGLREGVSVWADENRIEQVLLNVISN 497

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +++ G  + +            + +NG  IP++    +F RF         +  G G
Sbjct: 498 AIKYTANGGCIDVSLEETQNHATIKITDNGMGIPKEDLPRIFERFYRVDKARSREMGGTG 557

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGLSI +  I++H G + + S + G T +   +P 
Sbjct: 558 LGLSIAKQIIDVHEGMIKVDSRESGGTAVLIELPL 592


>gi|307154390|ref|YP_003889774.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
 gi|306984618|gb|ADN16499.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
          Length = 561

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 133/281 (47%), Gaps = 4/281 (1%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           +S+Q TL    + +   S I    A              +    L  + + L  A +  +
Sbjct: 281 QSIQTTLSWTREELETLSDIAQQTALAIHHLQYQDQWLTQQIEKLEAQKQQLEFAKKKTS 340

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ H  +ELRSPLT I+ F+ +L     GSLN+KQSQYV+ I +S   +L+LVND LDL
Sbjct: 341 EFLDHTIHELRSPLTGILSFSQILHEQIYGSLNAKQSQYVDVIVSSGQYMLSLVNDFLDL 400

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + + A   ++    + + D+       +  +   + + +K+     +    AD++R+ QI
Sbjct: 401 SKISAQREEIVLEAMAVEDVCLAALAMVEVRAVASQLTLKLDIAPDVDFCKADQRRIKQI 460

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHR 748
              +L+NA+ F+ KGS V LK  R      FSV + G  I  +    +F  F    N   
Sbjct: 461 LVNLLTNAIKFTEKGS-VTLKVERKQDYLDFSVIDTGIGIKTEDQNKLFQPFQQIKNHLS 519

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +G GLGL++      LHGG +++ S +   +     +P
Sbjct: 520 RKHKGTGLGLALSRQLAQLHGGDITLVSQEGQGSCFTLHLP 560


>gi|256005028|ref|ZP_05429999.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|255990996|gb|EEU01107.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
          Length = 424

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 170/395 (43%), Gaps = 25/395 (6%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            + + S    G + + F  +  +++   +  NT        ++ ++ G+     + ++ L
Sbjct: 50  RIKLKSKDELGQLAVHFNKMASKLERTISDLNTKKIELESIVESITNGIVAVDGNNKVIL 109

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA  +++  + +    G  I N                   +++     + K L+  +
Sbjct: 110 INPAAFTVFNLDADAEILGDDIENHIKNSQ-----------INSLLKDAIQKNKPLEAEV 158

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             +   VL  +  P+    + +        ++           +RK ++I+  FV +V++
Sbjct: 159 A-IDGRVLLVNASPIRPKDSDIDNSGGIVFIQ-------DITKVRKLEQIRTEFVSNVTH 210

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+T+I GF + LK   + +      +++E I   +  L  L+NDIL L+ ++  + 
Sbjct: 211 ELKTPITSIRGFIETLKNGAMNN-PVVAERFLEIIDIEAERLHELINDILLLSEIETKLK 269

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
             N     L  ++++V + +     E  I +      ++    A+  R+ Q+   ++ N 
Sbjct: 270 DTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL-MKANINRMKQLIMNLVDNG 328

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + ++ +  +V +   R++G  + SVK+ G  IP      +F RF        R   G GL
Sbjct: 329 IKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSAHIPRIFERFYRVDKGRSRGMGGTGL 388

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSIV+  +NL+ G + ++S     T    +IP +
Sbjct: 389 GLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIPCQ 423


>gi|237713960|ref|ZP_04544441.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409131|ref|ZP_06085675.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647394|ref|ZP_06724984.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807933|ref|ZP_06766713.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446116|gb|EEO51907.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352878|gb|EEZ01974.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637255|gb|EFF55683.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294444871|gb|EFG13558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 420

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 184/388 (47%), Gaps = 28/388 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSPG 477
           +V  +      +K     + +++    +   D  +  +N                R+   
Sbjct: 29  EVHSKENKENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPVQVGGVTKRVGDL 88

Query: 478 THIRN-IAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLP 534
            H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   E ++ P  
Sbjct: 89  LHCRNAIAAGECGQHEQCRLCCIRASIGRAFYKKASFKNLEASMKLLSED--EMTVTPCD 146

Query: 535 ------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                           +LT  +VT+   A+R L  + E    A+++K++F+ ++S+E+R+
Sbjct: 147 VSVSGTYLNIHGKDYMVLTVYDVTELKNAQRLLAIEKEHSISAEKLKSAFIANMSHEVRT 206

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ L+      S   ++  Y + I+ ++  LL LVNDI DL+ +++G +   Y
Sbjct: 207 PLNAIVGFSGLM---VSASGEEERKMYADIIAENNERLLRLVNDIFDLSQIESGTVDFVY 263

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                NDLL E+      K++ + + +   +  +     ++R+R++Q+ S +L NAM F+
Sbjct: 264 KEFDANDLLRELDGIFKAKLNNSPVELICEAHVQPIMMYSERERIIQVLSNLLHNAMKFT 323

Query: 703 SKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           + G  +      +   +  F V + G  IPE+  K +F+RF+      + +G GLGL++ 
Sbjct: 324 ASGE-IRFGCRLEGMEEVYFFVSDTGIGIPEEDQKKIFSRFIKLD--REMQGTGLGLTLS 380

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ I   GG++ + S     +T +  +P
Sbjct: 381 QTIIQNLGGNLELDSKVNRGSTFSFVLP 408


>gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
 gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
          Length = 1400

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 107/512 (20%), Positives = 198/512 (38%), Gaps = 59/512 (11%)

Query: 330 FHNRSFV-ELWEIDLAFLATNPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
           F N ++  +       +    P+++   E+ + +    +        TW E +    + S
Sbjct: 73  FCNAAYRRDTLGRKYPWALGRPASEVWAEIWDDIGPRIETVLTTGRATWDEALLLFLERS 132

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL---ETKYNTL---------V 433
              ++T+H     T       +  G  + M   +T   D    E +  TL         V
Sbjct: 133 GYPEETYH-----TFSYSPLRDDDGAVVGMLCVVTEDTDRVIGERRMATLRDLGSDPSVV 187

Query: 434 KVQGETIDHLSEGVA------------VFGPDGRIKLSNP--------AFRSLWKTEENR 473
           + + E +  + + +A            +F  +G  +L+          A         + 
Sbjct: 188 RTEREMLGFVGQQLAGNPRDLPFSLTYLFDDEGVARLAGRTGIAAGHAAAAETVPIGPDP 247

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--------V 525
           + PG       A        +    +F  + T    E  +    + LL           V
Sbjct: 248 MGPGGRWPAATAAEGASALVALDDAVFGRLPTGDWPEPPTQALVVPLLQQGTSPSGFLVV 307

Query: 526 LEYSIIPLPNAQTML------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                 PL  +                 S R+ +A   + E L + D  K +F  ++S+E
Sbjct: 308 ALNRYRPLDESYRGFLDLVAGHVAAGVASARSYQAQQRRAEELAELDRAKTAFFSNISHE 367

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            R+PLT I+G  + L+    G ++++  + +E I  S+  L  LVN +LD + ++AG M+
Sbjct: 368 FRTPLTLIVGPLEELRARPDG-VDARAREELELIHRSALRLGKLVNSLLDFSRLEAGRMQ 426

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             Y  + L  ++ E+     + + +  +  +V           DR    ++   +LSNA+
Sbjct: 427 AQYEPVDLAAVVAELASVFRSAVEKAGLTFEVDCPPLPEPVYIDRGLWEKVVLNLLSNAL 486

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLG 757
            F+  GS V +    D G  + +V + G  +PE     +F RF    NA      G G+G
Sbjct: 487 KFTFDGS-VRVAVRADEGHAVVAVADTGIGVPEQEMPRLFERFHRIENARSRSNEGSGIG 545

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L++V+  + LHGG +S +S ++  TT   RIP
Sbjct: 546 LALVKELVGLHGGTISAASVEKQGTTFTLRIP 577



 Score = 41.1 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 85/267 (31%), Gaps = 39/267 (14%)

Query: 208 HRDQAGDILWANISYKKN----TETEGIVFQKAIGESRKLFKEEIKKRMISSSA------ 257
            R     +      Y        ET  ++    +       +     R    +A      
Sbjct: 666 LRGAGHRVSAVTDGYAALDRARAETPDLIISDVMMPGLDGLRLVADLRADGRTAGIPVLL 725

Query: 258 --LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL-HN 314
                    ++  LE G +  Y +     +   A +  +V K + + +Q       L  +
Sbjct: 726 LSARAGQEASIEGLEAGADD-YLVKPFSAAELLARVQTNV-KLVRLRNQHARWRTALVDS 783

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           L  A  + D +  +   N +F E+       L   P +    +         +Q + +  
Sbjct: 784 LQEAFFVCDHDGAVIEINSAFTEVLGFGPDQLPYVPVHPWWPD---------QQTDPEAH 834

Query: 375 KENIFSVYKSSETHKDTWHLP----NGQTLHVIVT----SNPRGG---TIWMFENLTVQ- 422
           ++   +     E  + T+ +P    +G  L V       ++P  G    +  F ++T + 
Sbjct: 835 RQVADAFATVLEQPRGTYTIPVRHRDGHRLWVAAAFNEVTDPDTGRRVIVGTFRDVTAEH 894

Query: 423 --VDLETKYNTLVKVQGETIDHLSEGV 447
             V  E+    L     E+ + L+E +
Sbjct: 895 YAVQRESALAALSMRLTES-ESLTEAL 920


>gi|170783492|ref|YP_001741985.1| putative signal transduction histidine kinase [Arthrobacter sp.
           AK-1]
 gi|150034979|gb|ABR66990.1| putative signal transduction histidine kinase [Arthrobacter sp.
           AK-1]
          Length = 644

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 104/486 (21%), Positives = 199/486 (40%), Gaps = 24/486 (4%)

Query: 315 LTVAIAIFDQNRYLQFH--NRSFVELWEIDLAFLATNPSNDELLEFLRSANK-LPEQLNW 371
           L  A+   + +  L F   N  F  L  +    L   P  +  +   R  N  L    N 
Sbjct: 26  LPTAVFRKENSEGLVFLGGNSEFDAL-VLGNGSLDEGPERELAVALTRLVNAALSATSNP 84

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
            T   ++    ++       + +P+          +P    +     LT Q   E+  ++
Sbjct: 85  PTVAVHLGDRLEAFRPRFRPFKVPD----------DPEEYLVVQLTALTEQDSAESDLHS 134

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            ++   + +D+ +  + V   DGR  ++N  +          +   T     A   +  Y
Sbjct: 135 TIRHLKDLLDNSTALMYVKDLDGRYLIANEYYAKRLGRSAESIIGHTDYDLFAEPIAEAY 194

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-----TFVNVT 546
            ++D   +  A   + ++   ++ G ++   DS       PL +             ++T
Sbjct: 195 TKNDDLVIRTAESIAVEEPLAAIGGRIDPDEDSRWLSIKFPLQDDNGNPYALGAISTDIT 254

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  RAERA  +      +A+  K+ F+  +S+ELR+PL  I+GF  LL+      L+ + 
Sbjct: 255 DLKRAERAARDAMHEAERANRSKDEFLSRMSHELRTPLNAILGFAQLLQNL---PLSPEA 311

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++   +I  +   LL LVND+LD+  ++AG   +  + +   D +++  Q I      ++
Sbjct: 312 AESAGHILDAGKHLLALVNDVLDITWIEAGAPGITTAAVPAIDPIHQALQLIRPLASASD 371

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I I     G L  ++ AD QRL Q+F  +L NA+ F++    V +          F + +
Sbjct: 372 IEIASDLHGALHRYILADTQRLRQVFLNLLGNAVKFNTAQGAVRVWCEEKADFLRFFIMD 431

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS-SSDEGVTTI 784
            G  + E   + +F  FV  +   +  G GLGL++ +  +   GG + I  ++    +T 
Sbjct: 432 TGPGMDESDAQRLFKPFVRLSQSAEVEGSGLGLALSKRLVQEMGGDLGIEHTAPGEGSTF 491

Query: 785 NCRIPS 790
              +P 
Sbjct: 492 FVDMPL 497


>gi|150025527|ref|YP_001296353.1| two-component system sensor histidine kinase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772068|emb|CAL43544.1| Probable two-component system sensor histidine kinase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 729

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E + KA + +  F+  VS+ELR+PL  I G + +L      +   +Q +Y++ +
Sbjct: 344 ELEIAKERIEKASKARAEFLSTVSHELRTPLNAINGISHILLD---DNPKPRQIEYLKSL 400

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL  +N+IL++  +++  +++   +  L +LLN ++ S+  +  +NN    +  
Sbjct: 401 KFSGNHLLTYINEILEINRIESDNIEIENISFNLKELLNNIQNSLKEQARQNNNHFILTI 460

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGD--FIFSVKNNGS 728
           D       + D  +L QIF  ++SNA+ F+  G+ ++      RD+      F VK+NG 
Sbjct: 461 DNDAPEILIGDPTKLSQIFINLISNALKFTENGNIIVNARVVNRDDTSCLVKFEVKDNGI 520

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D  +S+F  F   +     +  G GLGL+IV+  + L  G + + S     +T   
Sbjct: 521 GIPTDKQESIFESFSQGSVEINRKYGGTGLGLTIVKRLLALMNGKIEVHSQIGIGSTFTF 580

Query: 787 RI 788
            +
Sbjct: 581 NL 582


>gi|124026473|ref|YP_001015588.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961541|gb|ABM76324.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL1A]
          Length = 689

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 154/393 (39%), Gaps = 46/393 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G I L NP  R L++ E   L     +  +  +
Sbjct: 291 EELKAAQVKQQSLIATMADGALLLDEQGNIVLVNPTARRLFRWEGRNLEGQNLLNQLPDS 350

Query: 487 CSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             +            +++ +F   DD R +L+     L   ++  S+            V
Sbjct: 351 LVKELETP-----ITSLLNNFGDSDDLRCNLEEPPRTL--RIVLKSVRDTTGENIKGIAV 403

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            V D  R             + +  +  F+ +VS+ELR+PL NI  + + L         
Sbjct: 404 TVQDLTR-----------EVQLNAAQKRFISNVSHELRTPLFNIKSYVETLYDLGEQLTK 452

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +++   ++ +  L  LVND+LDL+ +++G   +    + + + + +  ++      
Sbjct: 453 DEQKEFLGVANSETDRLTRLVNDVLDLSKLESGR-TIQLEALSIKEAMEQTLRNYKLNAE 511

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           E N+++ +  +  L   + +   LLQ+F  ++ NA+ FS +G  + LKA           
Sbjct: 512 EKNVKLILTVENNLTFVLGNWDMLLQVFDNLVGNALKFSQEGGIINLKAYTWPDICVASP 571

Query: 718 -----------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLS 759
                                 V + G  I E   + +F RF           G GLGLS
Sbjct: 572 VDLDNKAPHCEILSPMPKIRVEVSDTGYGISEIDQQRIFERFYRVEDSVHTEVGTGLGLS 631

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           IV+  ++ HG  + ++S     TT    +P ++
Sbjct: 632 IVKGIVDKHGSEIRMASEPNTGTTFWFELPLED 664



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 47/146 (32%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D+   +   N +   L+  +   L      +
Sbjct: 286 DAANIEELKAAQVKQQSLIATMADGALLLDEQGNIVLVNPTARRLFRWEGRNLEGQNLLN 345

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
           +L + L    + P          ++ + +  S+  +     P  +TL +++ S       
Sbjct: 346 QLPDSLVKELETP--------ITSLLNNFGDSDDLRCNLEEP-PRTLRIVLKSVRDTTGE 396

Query: 410 --GGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V L       +
Sbjct: 397 NIKGIAVTVQDLTREVQLNAAQKRFI 422


>gi|325279566|ref|YP_004252108.1| GAF sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311375|gb|ADY31928.1| GAF sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
          Length = 945

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 113/468 (24%), Positives = 206/468 (44%), Gaps = 26/468 (5%)

Query: 342 DLAFLATNPSNDELL--EFLRSANKLPEQLNWKTWKEN-IFSVYKSSETHKDTWHLPNGQ 398
           D+ +L +    D+LL  E LR   K+  +       E  I S++ +     +      G 
Sbjct: 482 DIPWLYSQMQEDKLLITEDLRVTQKIKFEKERHLLLEQGIISMFVAPLHVNNQLWGYVGV 541

Query: 399 TLHVIVTSNPRGGTIWMFEN-----LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                V    +   I++        + ++     K NT  K +   ++ L    A     
Sbjct: 542 DYVRQVRPCSQQDKIYLQTLAQILCIGIEHFRSEKRNTQSKRRVAELESLFS-FASIQAH 600

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS--RYYNESDGWDLFAAIITSFDDER 511
             +   N + R  + T++  ++ G   R+I       RY +  D   L   I  +   + 
Sbjct: 601 IGVAQWNVSTRQGFATDQWFINLGETTRDITQVIDTYRYMHPEDRTALLQFIDEAAQGQA 660

Query: 512 KSLQGTLELLSDS---VLEYSII---PLPNAQTMLTFV---NVTDSVRAERALTEKNEAL 562
            +    + +  ++     +Y      P  + + +       ++ +  + E  L +     
Sbjct: 661 HTFGRHVRIRQNNEWHWYKYHASLRDPHASGEQVELVFLSADIDNLKKIEANLIQAKAKA 720

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            ++D +K++F+ ++S+E+R+PL  I+GF++LL +    S   K ++Y   IS ++ +LL 
Sbjct: 721 EESDRLKSAFIANMSHEIRTPLNAIVGFSNLLASEMDFSEEDK-AEYTRIISVNNDLLLQ 779

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFV 681
           L+NDILD++ ++AG+M    +T+ LN    E++     K  +  I IK I +  +  +  
Sbjct: 780 LINDILDISKIEAGVMDFTENTVELNQFFQEIESVFQLKA-KTGIEIKFIPEQAEEYAIK 838

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR RL Q+ S  L+NA+ F+ +G  +         D  F V++ G  IP+D   SVF R
Sbjct: 839 IDRIRLNQVISNFLNNALKFTRQGH-IFFGYRLREKDIYFYVEDTGIGIPKDQQASVFRR 897

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           FV   +  Q  G GLGLSI  + I+   G + + S  E  +T    IP
Sbjct: 898 FVKLNNFIQ--GTGLGLSICSTIIDKFNGKIGVESEPEKGSTFWFTIP 943


>gi|83312725|ref|YP_422989.1| sensor protein fixL [Magnetospirillum magneticum AMB-1]
 gi|82947566|dbj|BAE52430.1| Sensor protein fixL [Magnetospirillum magneticum AMB-1]
          Length = 548

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 87/517 (16%), Positives = 183/517 (35%), Gaps = 25/517 (4%)

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
                   A++   E  V  +      IL N+       D    L   +RS   L    +
Sbjct: 47  EEVSRQAEALETQVERQVQAR-EDLRAILDNMPDIFYRTDTEGRLLMVSRSVEGLLGYTV 105

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             +     +         +   P+ +            Y+    HKD   L    +    
Sbjct: 106 EEVLG--LDSAFFHGSDDSR--PQLVAALEAAGGSIIDYELRLRHKDGRILWASTSSRFY 161

Query: 404 VTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           + +  R GGT  +   +  +   E        +    +D  S+ + +F PDG +   N  
Sbjct: 162 LDAQGRRGGTEGVVRLIEERKRTELYIRENQALIQAMLDASSDAIMLFRPDGTLLAVNEV 221

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
             + +      L+            ++   E+    +       + D R           
Sbjct: 222 MAARFGRRATELTGSCLWDMFPPDVAKAREEAVTRVVQTGEAIHYLDRR----------G 271

Query: 523 DSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           D  L+ SI P+P    +         ++T    AE+ +      L +++     F    S
Sbjct: 272 DLYLDNSIYPVPGVDGVPDKVAVYSRDITAQTLAEQKVATYLAELERSNAELEQFAYVAS 331

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           ++LR PL  I  +  LL+      L     +++ +    +  +  LV D+LD + +    
Sbjct: 332 HDLREPLRMISSYLSLLERRYAPKLEGDGLEFLAFARDGAQRMDRLVLDLLDFSRIQRKG 391

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             +    +  + LL++  + +A  + E+   ++V   G+    + D  +++++F  ++ N
Sbjct: 392 SPI--VAMDADPLLHQALRHLAPAIEESGGAVEVAEGGEAVRVMGDPDQVIRLFQNLIGN 449

Query: 698 AMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           A+ + +      V +   R  G++   V +NG  I     + +F  F          G G
Sbjct: 450 AVKYRAPDRAPLVKVSWQRTGGEWECVVADNGIGIDPQYFERIFGIFQRLHTPDAYAGTG 509

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +GL+I +  +  HGG + + S  +  +  +  +P+ +
Sbjct: 510 IGLAICKKIVERHGGRIWVESVPDQGSVFHFTLPAAQ 546



 Score = 45.3 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 108/381 (28%), Gaps = 56/381 (14%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  +      + ++        + + D++  + +  D  G +L  + S        G   
Sbjct: 49  VSRQAEALETQVERQVQAREDLRAILDNMPDIFYRTDTEGRLLMVSRS---VEGLLGYTV 105

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVS---TLEHGNNKS--------YKIVRV 282
           ++ +G     F      R    +ALE      +     L H + +         + +   
Sbjct: 106 EEVLGLDSAFFHGSDDSRPQLVAALEAAGGSIIDYELRLRHKDGRILWASTSSRFYLDAQ 165

Query: 283 LNSFGEAGIAIDVSKEIT----VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
               G  G+   + +       + +       +L   + AI +F  +  L   N      
Sbjct: 166 GRRGGTEGVVRLIEERKRTELYIRENQALIQAMLDASSDAIMLFRPDGTLLAVNEVMAAR 225

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-----WH 393
           +      L  +   D           +      K  +E +  V ++ E           +
Sbjct: 226 FGRRATELTGSCLWD-----------MFPPDVAKAREEAVTRVVQTGEAIHYLDRRGDLY 274

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           L N       V   P    ++   ++T Q   E K  T +                    
Sbjct: 275 LDNSIYPVPGVDGVPDKVAVYS-RDITAQTLAEQKVATYLA------------------- 314

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
             ++ SN           + L      I +  +   R Y      D    +  + D  ++
Sbjct: 315 -ELERSNAELEQFAYVASHDLREPLRMISSYLSLLERRYAPKLEGDGLEFLAFARDGAQR 373

Query: 513 SLQGTLELLSDSVLEYSIIPL 533
             +  L+LL  S ++    P+
Sbjct: 374 MDRLVLDLLDFSRIQRKGSPI 394


>gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302]
 gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302]
          Length = 949

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|254507539|ref|ZP_05119673.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Vibrio parahaemolyticus 16]
 gi|219549609|gb|EED26600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Vibrio parahaemolyticus 16]
          Length = 929

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 121/242 (50%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +  +K   L + Q+ Y+  I
Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK---LTNSQTDYLNTI 331

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+T LLN++NDILD + ++AG + L        + L EV    AT  HE  + + +  
Sbjct: 332 EKSATNLLNIINDILDFSKLEAGKLALESIPFDFQESLEEVVSLQATSAHEKGLELTLKI 391

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGS 728
           D K+ +  V D  R+ Q+ + ++ N++ F+  G+  + ++      D +   F V++ G 
Sbjct: 392 DPKIPAGLVGDSLRIQQVLTNLVGNSIKFTEHGNIDISVEMRSQKEDVVELQFMVRDTGI 451

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T   
Sbjct: 452 GISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWF 511

Query: 787 RI 788
            +
Sbjct: 512 TL 513


>gi|160941294|ref|ZP_02088631.1| hypothetical protein CLOBOL_06187 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435855|gb|EDP13622.1| hypothetical protein CLOBOL_06187 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1075

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 84/404 (20%), Positives = 171/404 (42%), Gaps = 31/404 (7%)

Query: 406 SNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
            NP  G + +F   +++T +   E  +  + ++  E+I  +     +     R  L + +
Sbjct: 386 QNPETGHVILFFYTQDVTEKKMQEQLFKRIAELDYESITEVD---ILRDMAYRTILVDES 442

Query: 463 FRSLWKTEENRLSPGTHIRNIA-----ATCSRYYNESDGWDLFAAIIT-----SFDDERK 512
             ++     +     + IR I+           Y     +D   + +      +F  E +
Sbjct: 443 --NMDTMLPDHSRFQSEIRAISGRYMDEAAREEYLRKLDYDYMKSQLAHNDAYTFIVEMR 500

Query: 513 SLQGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            + G   +    V   S  +  +  A+T +T V + +  R +  L     A  +A+  K+
Sbjct: 501 DMTGATRVKRFRVFYISRELERVCVARTDVTDVVLKEQ-RQKEELAAALVAAEQANAAKS 559

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+E+R+P+  IIG + +   S     + +    +  I  SS  LL+L+NDILD+
Sbjct: 560 DFLSRMSHEIRTPMNAIIGMSTIAAQSIGD--DEQVEDCISKIGISSRFLLSLINDILDM 617

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQ 689
           + +++G M L    I   + +N +     ++     +  + I D  L   ++ D  +L Q
Sbjct: 618 SRIESGKMLLKSEKIPTEEFINGINSICYSQADVKGVEYECIVDPVLDDYYIGDAMKLQQ 677

Query: 690 IFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +   ILSNA+ F+ +G  V   A++     ++    F V + G  + E+    +F  F  
Sbjct: 678 VLINILSNAIKFTQEGGKVTFSASQRRKTKNDASLRFIVNDTGVGMNEEFLPHLFEPFSQ 737

Query: 745 NAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +        G GLGL+I ++ +++  G +++ S     T    
Sbjct: 738 ESTGTTSLYGGTGLGLAISKNIVDMMDGKITVRSIKGIGTEFTV 781


>gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6]
          Length = 949

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|302185533|ref|ZP_07262206.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 1187

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 189/466 (40%), Gaps = 21/466 (4%)

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQ 398
           +      +   +  ELL  L   NK  E+      +        S+      W  +P  Q
Sbjct: 463 QWSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRMRWLGSALPQPSLWGRIP--Q 517

Query: 399 TLHVIVTSNPRGGTIWMFE------NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
            +  +V+     G + +         +  +   + + N  +  +   +D +   + V   
Sbjct: 518 WVFWVVSLALLAGLVSLAWSSRLKVQIRQRQKAQRQLNDQLAFKHALLDGIPNPIYVRDL 577

Query: 453 DGRIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            GR+   N ++   L  + E          N+          +D  +L       F D  
Sbjct: 578 KGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLKDHQPVFSDRT 637

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
             L G    +    + +          +  ++++T+  + E+ L        +A+E K++
Sbjct: 638 LELPGKRMDVWQWTVPFFAADGQLQGLLGGWIDITERKQLEQQLQNAVRMAAQANEAKSA 697

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  IIG  +L +   L    +  S  ++    S+T L+ L+ + LDLA
Sbjct: 698 FLASMSHEIRTPMGAIIGLLELEREHTLRRGETP-SHGLQVAHRSATELVALIGESLDLA 756

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690
            ++AG ++L+ +   L+DL + V +  + +  E ++ +++    +  G +  D  RL Q+
Sbjct: 757 RIEAGSLQLSLAITPLHDLFDGVIELFSAQAREKSVELRMEFSAQARGDYWLDPMRLRQV 816

Query: 691 FSKILSNAMDFSSKGSTVI-LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              +L NA+ F+ +G+ V+ +    ++        S++++G  I  +  + VF  F   +
Sbjct: 817 LHNVLGNALKFTRQGAVVVKVDVTSESSGSTRVRISIQDSGEGIEPERQQHVFQPFTQAS 876

Query: 747 HRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                   G GLGLSI    + L  G +S+ S     T +   +P 
Sbjct: 877 DDTAAHYGGSGLGLSITRQLVELMKGDISLHSEPGQGTLVTVDLPL 922



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +     ++L++ ++    L D +   ++ RD  G ++  N SY++
Sbjct: 531 LVSLAWSSRLKVQIRQRQKAQRQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQ 590

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                 L    + ++M +         +      +    G        
Sbjct: 591 SLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLKDHQPVFSDRTLELPGKRMDVWQW 650

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL +   +      A + F
Sbjct: 651 TVPFFAADGQLQGLLGGWIDITERKQLEQQLQNAVRMAAQANEAKSAF 698



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 96/313 (30%), Gaps = 34/313 (10%)

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
           V       A++   R       LR++        L E+      + N +  +      L 
Sbjct: 396 VLALPARHALEDMIRREHPTIQLRLVDTYDQARALVESGAADATIQNEVGAYLFPSGRLK 455

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK----EEIKKRMISSSALE 259
                R   G   W+   +  +           + ++ + F       I+ R + S+  +
Sbjct: 456 V---ARSVEGQ--WSPDRF--SVIKTQPELLGILNKALEEFPVAELRSIRMRWLGSALPQ 508

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA----------IDVSKEITVNDQLTHTY 309
            +    +          + +V +    G   +A               +  +NDQL   +
Sbjct: 509 PSLWGRIPQWV------FWVVSLALLAGLVSLAWSSRLKVQIRQRQKAQRQLNDQLAFKH 562

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFLRSANKLPEQ 368
            +L  +   I + D    L   NRS+ +   I    +     ++  L+    +     + 
Sbjct: 563 ALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRALAEQMHTDY 622

Query: 369 LNWKTWKENIFS--VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
           LN     + +FS    +      D W      T+          G +  + ++T +  LE
Sbjct: 623 LNLLKDHQPVFSDRTLELPGKRMDVWQW----TVPFFAADGQLQGLLGGWIDITERKQLE 678

Query: 427 TKYNTLVKVQGET 439
            +    V++  + 
Sbjct: 679 QQLQNAVRMAAQA 691


>gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 536]
 gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
 gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536]
 gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
          Length = 949

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|49477249|ref|YP_035694.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118477033|ref|YP_894184.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196036837|ref|ZP_03104226.1| sensor histidine kinase ResE [Bacillus cereus W]
 gi|196047621|ref|ZP_03114828.1| sensor histidine kinase ResE [Bacillus cereus 03BB108]
 gi|218902687|ref|YP_002450521.1| sensor histidine kinase ResE [Bacillus cereus AH820]
 gi|225863440|ref|YP_002748818.1| sensor histidine kinase ResE [Bacillus cereus 03BB102]
 gi|228914151|ref|ZP_04077769.1| hypothetical protein bthur0012_13850 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926608|ref|ZP_04089677.1| hypothetical protein bthur0010_13240 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228932863|ref|ZP_04095730.1| hypothetical protein bthur0009_13350 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945177|ref|ZP_04107533.1| hypothetical protein bthur0007_13400 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229121119|ref|ZP_04250356.1| hypothetical protein bcere0016_14250 [Bacillus cereus 95/8201]
 gi|229183772|ref|ZP_04310989.1| hypothetical protein bcere0004_13400 [Bacillus cereus BGSC 6E1]
 gi|49328805|gb|AAT59451.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118416258|gb|ABK84677.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|195990566|gb|EDX54545.1| sensor histidine kinase ResE [Bacillus cereus W]
 gi|196021535|gb|EDX60235.1| sensor histidine kinase ResE [Bacillus cereus 03BB108]
 gi|218536187|gb|ACK88585.1| sensor histidine kinase ResE [Bacillus cereus AH820]
 gi|225787288|gb|ACO27505.1| sensor histidine kinase ResE [Bacillus cereus 03BB102]
 gi|228599621|gb|EEK57224.1| hypothetical protein bcere0004_13400 [Bacillus cereus BGSC 6E1]
 gi|228662238|gb|EEL17841.1| hypothetical protein bcere0016_14250 [Bacillus cereus 95/8201]
 gi|228814412|gb|EEM60677.1| hypothetical protein bthur0007_13400 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826784|gb|EEM72551.1| hypothetical protein bthur0009_13350 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832984|gb|EEM78552.1| hypothetical protein bthur0010_13240 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845484|gb|EEM90517.1| hypothetical protein bthur0012_13850 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 591

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli CFT073]
 gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
 gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073]
 gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU
           83972]
 gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
          Length = 949

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|260769147|ref|ZP_05878080.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP
           102972]
 gi|260614485|gb|EEX39671.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP
           102972]
          Length = 834

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 153/375 (40%), Gaps = 29/375 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + +   K   +  +       ++  +G +   NP+  S      + L       ++ + 
Sbjct: 327 QRLSDQEKQFEDLFNFALSPTILWTAEGELIRMNPSAHS------HFLRNNADDHSLFSV 380

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----PNAQTMLTF 542
             R             I+   + E          +   V+ +++ P+         +   
Sbjct: 381 LKRQLIPQIKLAAQGEILKEVNTE----------VDGRVILWNLSPIVVENRIESIITQG 430

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT    AE+      +   ++  ++  F+  +S+ELR+PL  I+G + LLK +     
Sbjct: 431 QDVTSIAEAEKQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKRTV---T 487

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q++ V  + +S   LL ++NDILD + ++ G  ++  +   L D+++ +++      
Sbjct: 488 EKEQAEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVSAIERIYRPLC 547

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD 718
            E  + + + ++ G       D+ RL QI   +L+N++ F+ +G+    + L        
Sbjct: 548 REKGLTLTLNTNIGDDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQLHLLETEAGAK 607

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              +V + G  I E     +F  FV       R   G GLGL+IV S I + GG + + S
Sbjct: 608 LEITVLDTGIGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIEMLGGSIEVKS 667

Query: 777 SDEGVTTINCRIPSK 791
           S    T     +P +
Sbjct: 668 SFGVGTRFTIELPLE 682


>gi|254472519|ref|ZP_05085919.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
 gi|211958802|gb|EEA94002.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
          Length = 729

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 91/378 (24%), Positives = 166/378 (43%), Gaps = 22/378 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D + +           +D L   V      G +   N A +  + T       G  I   
Sbjct: 92  DADWQLREADDRHRSILDALGAIVIRCDSSGLVLSINDAGKRNFPT-------GFGIEVG 144

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A    Y  +       +A  T+ D   ++  GT      S+L  SI        ++ ++
Sbjct: 145 KAIHLPYAEDFTPELEESAAGTTEDVALRTKHGTRWY---SLLRLSIRDGSGGAPIIQWI 201

Query: 544 --NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +VTD   AE+ L    +    A E K+ F+  VS+E+R+PL  ++G  DLL  +   S
Sbjct: 202 LTDVTDRRHAEQKLRADRDHAANASEAKSRFLAMVSHEIRTPLNGVLGMADLLDDT---S 258

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             ++Q  Y+  I  S + LL L++++LD + ++AG ++L    + L  L+  V + ++ K
Sbjct: 259 TTAEQQNYINAIKTSGSTLLMLIDEVLDYSKIEAGKLELETGAVELTPLVERVVELLSPK 318

Query: 662 MHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD---N 716
            H   ++I   I+     +  +D  RL Q+   ++ NA+ F+ +G   ++L+ ++D   N
Sbjct: 319 AHAKGLQIGSYIAPEVPETIQSDPARLQQVLYNLVGNAIKFTEQGGVSLVLQVSQDSAGN 378

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F+VK+ G  + E     +F  F    +   R+  G GLGL+I +    L G  +++
Sbjct: 379 HLLEFAVKDTGPGMDEVTAARIFREFEQGEYGRDRKFDGAGLGLAISKRLAELMGSSLTV 438

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     +T    +P  +
Sbjct: 439 QSQLGCGSTFLLEMPLDQ 456


>gi|289581728|ref|YP_003480194.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289531281|gb|ADD05632.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 951

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 106/641 (16%), Positives = 234/641 (36%), Gaps = 55/641 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLD-FLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           ++ +      +L      F  L D+++ + ++  D+ G I+  N       + +G    +
Sbjct: 338 DITDRKRSEGQLKKSQEAFNTLVDTVEEYAIFRLDEDGRIISWNEG---AHQIKGYDRDE 394

Query: 236 AIGESRKLFKEEIKKRM-------ISSSALEKNFCETVSTLEHGNNKSYKIVRVL----- 283
            +GE    F  +  + M        ++        E       G+     +         
Sbjct: 395 ILGEHFSTFYTDEDRAMNVPERNLQAALETGSAEDEGWRVRSDGSQFWANVTITPIRAAD 454

Query: 284 -NSFGEAGIAIDVSKEITVNDQLT-HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
               G   +  D++       +L      + + ++ A+   D        N    EL   
Sbjct: 455 GTHQGFLKVTRDMTDRRNREQELETELQRVFNRVSDALYAVDNEFRFTLVNDRAEELLGY 514

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
             A L      + L +   SA ++ +      W     +  +   T  + ++   G  + 
Sbjct: 515 PEADLLG----ESLWDVFPSAAEIDD-----VWDAFHTARDEQIPTDYELYYPRLGFWVE 565

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV-AVFGPDGRIKLSN 460
             +  +  G +++ F +++ +   E       +      ++   GV A+F  D    L+ 
Sbjct: 566 ANLYPSETGISVY-FRDVSERKQREQALEESKQRYRTIAEYFPNGVVALFDHDLEYTLA- 623

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLE 519
            A +   K +E           I           +  D    ++ S  + + +S++    
Sbjct: 624 -AGQGFEKIDEEP-------SEIEGASFENTWTPETRDTLEPVLRSALEGDEQSVEF--- 672

Query: 520 LLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
              D       +P+ +++      M    ++T+    +R L E    L ++++    F  
Sbjct: 673 WHDDREWMLYAVPVTDSEGTVFAGMTMAHDITERKENQRKLEETVAQLEESNKRLEQFAY 732

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             S++L+ PL  +  +  L++     + +    +++EY    +  +  +++ +L  + V+
Sbjct: 733 AASHDLQEPLRMVSSYLQLIERRYSDAFDEDGEEFLEYAVDGAERMRRMIDGLLAYSRVE 792

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
                L    I L+D+   V++ +  ++ E N  I V  DG L     D  +L Q+F  +
Sbjct: 793 TRGDPL--EPIDLDDVFANVREDLQLQIAETNAEITVADDG-LPRVRGDANQLRQVFQNL 849

Query: 695 LSNAMDFSSKGS-TVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           L NA+++S      + + A         +++ SV + G  I       VF  F    +  
Sbjct: 850 LENALEYSGDDRPRIHVDAESRFRDRRREWVISVHDEGIGIESSDQDRVFEVFERLHNPE 909

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              G G+GL++ E  +  HGG + I S     TT++  +P+
Sbjct: 910 DHPGTGIGLALCERIVERHGGEMWIESEPGAWTTVSFTVPA 950



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/485 (12%), Positives = 140/485 (28%), Gaps = 48/485 (9%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           + +  +A   +    + +          R  SL G   E  E T          +    +
Sbjct: 22  ERYRALARAIDGGLCQCDEHGDIEVVDDRFRSLTGYPGE--ELTDTHISALFDNAGIAAI 79

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            D L            +     S    + T  +      G++R+   + +   +      
Sbjct: 80  DDVLTSPSEDDVVETAVDVQTASGDPLSCTVRVTRVPPAGDAREDELDSVLCFVRERGGG 139

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLN------------SFGEAGIAIDVSKEITVNDQLT 306
                E V  ++  + ++ ++                    E+   ++++   T      
Sbjct: 140 STVGSEPVPEVDGASERTVELEPESEPEMEPGPESESKPKSESKSPLELTSSETDRASAD 199

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
                L+  ++   + D +  +++ + +   +  +D   +   P +  + E L      P
Sbjct: 200 SIKAALNGASIGAIVLDGSFEIKWIDETAETILGLDRESVLGRPKHAVVEEQLADRVVEP 259

Query: 367 EQLNWKTWKENIFS----------VYKSSETHKDTWHLPNGQTL-----------HVIVT 405
                +       S              +E+   T   P   TL            +   
Sbjct: 260 PSFVSQAGYGRRESDEDDETPTDTAGSDNESQHTTDEAPPADTLEFKLVDDRGKRWLEYQ 319

Query: 406 SNPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKL 458
           S P       GG +  ++++T +   E +     +     +D + E  +     DGRI  
Sbjct: 320 SKPIKTGAYAGGRVEFYDDITDRKRSEGQLKKSQEAFNTLVDTVEEYAIFRLDEDGRIIS 379

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQG 516
            N     +   + + +  G H         R  N  +     A    S +DE  R    G
Sbjct: 380 WNEGAHQIKGYDRDEIL-GEHFSTFYTDEDRAMNVPERNLQAALETGSAEDEGWRVRSDG 438

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +    + ++         +   +    ++TD    E+ L  + + +       +  +  V
Sbjct: 439 SQFWANVTITPIRAADGTHQGFLKVTRDMTDRRNREQELETELQRVFNRV---SDALYAV 495

Query: 577 SYELR 581
             E R
Sbjct: 496 DNEFR 500



 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 72/534 (13%), Positives = 164/534 (30%), Gaps = 77/534 (14%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD------ETPEIIGQ 98
           I  R     ++ ++    + + D + +Y     + +   I W+         +  EI+G+
Sbjct: 339 ITDRKRSEGQLKKSQEAFNTLVDTVEEYAIFRLDEDGRIISWNEGAHQIKGYDRDEILGE 398

Query: 99  LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA-TEKLRKEGQSFDLVAETQNDCAIKIEG 157
                          +F         + + +   +   + G + D          ++ +G
Sbjct: 399 ------------HFSTFYT--DEDRAMNVPERNLQAALETGSAED------EGWRVRSDG 438

Query: 158 RVSGSCAFLR-ILSLDGIYSEL----AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
               +   +  I + DG +        + T +  +     +  + +F+ +   ++  D  
Sbjct: 439 SQFWANVTITPIRAADGTHQGFLKVTRDMTDRRNREQELETELQRVFNRVSDALYAVDNE 498

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH- 271
                 N    +  E  G      +GES         +      A      E + T    
Sbjct: 499 FRFTLVN---DRAEELLGYPEADLLGESLWDVFPSAAEIDDVWDAFHTARDEQIPTDYEL 555

Query: 272 ---GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVA-IAIFD 323
                    +     +  G +    DVS+       L  + +    +        +A+FD
Sbjct: 556 YYPRLGFWVEANLYPSETGISVYFRDVSERKQREQALEESKQRYRTIAEYFPNGVVALFD 615

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
            +                   F   +    E+          PE  +  T +  + S  +
Sbjct: 616 HDLEYTLA---------AGQGFEKIDEEPSEIEGASFENTWTPETRD--TLEPVLRSALE 664

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             E   + WH      L+ +  ++  G     + M  ++T + + + K    V    E  
Sbjct: 665 GDEQSVEFWHDDREWMLYAVPVTDSEGTVFAGMTMAHDITERKENQRKLEETVAQLEE-- 722

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
                       + R++    A+ +    +E      ++++ I    S  ++E DG +  
Sbjct: 723 -----------SNKRLEQF--AYAASHDLQEPLRMVSSYLQLIERRYSDAFDE-DGEEFL 768

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
              +   +  R+ + G   LL+ S +E    PL        F NV + ++ + A
Sbjct: 769 EYAVDGAERMRRMIDG---LLAYSRVETRGDPLEPIDLDDVFANVREDLQLQIA 819


>gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SMS-3-5]
 gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           SMS-3-5]
          Length = 949

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 247/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L+   D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLQVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|150388839|ref|YP_001318888.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149948701|gb|ABR47229.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 583

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 150/369 (40%), Gaps = 7/369 (1%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRNIAATCS 488
           N    +    +    +G+  +  +      N +F  +L    + R +    +  +     
Sbjct: 183 NRGEAILKHVLKSTGDGIWEWNVESNQIYLNKSFLHTLGYQNDQRTTKAEDLIKLIHPED 242

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           RY  +          I   D E +      E +   +    I       + L  V +  +
Sbjct: 243 RYGFKEQVKKCCDNKIEYIDYEIRVKSKKGEWIWFRIRGTVIKKDAAHGSSLKMVGMFIN 302

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----LKTSKLGSLNS 604
           +   + +  +       ++++  F  ++S+ELR+PL  I+G   L    + +        
Sbjct: 303 ITERKIIRNELNEKMHFEKLRTDFFSNISHELRTPLNVILGSLQLQGLYIASENTSKYKK 362

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           + S+  + +  +S  LL LVN+I+D+  +D+G   +N     +N L+ E+  S+   +  
Sbjct: 363 EYSKANKRMKQNSYRLLRLVNNIIDITKIDSGFYDINLENYDINMLIREIVLSVEDYIEN 422

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             ++I+  ++        D +++ +I   +LSNA+ F+  G  +++           SV+
Sbjct: 423 AGLQIEFKANTNQAIIACDPEKIERIMLNLLSNAIKFTEAGGKIVVTVKMVQNRIFMSVR 482

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP++   SVF RF        R   G G+GLS+V   I  H G V++ S     T
Sbjct: 483 DTGIGIPQEKINSVFERFKQVGSYSHRKNEGSGIGLSLVRLLIEAHKGKVTVRSKLNEGT 542

Query: 783 TINCRIPSK 791
                +P++
Sbjct: 543 EFIIELPNE 551


>gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
 gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
          Length = 2370

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 8/266 (3%)

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            E     L  AQ     +       AE       E+    + IK+ F+  +S+ELR+PL  
Sbjct: 1959 EDRAFMLAVAQQCAQAIARAHLYEAELTARNAAESA---NRIKDEFLAVLSHELRTPLNP 2015

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            I+G+T L+++ KL    S ++  +E I  ++ +   L+ D+LD++ +  G + LN+  I 
Sbjct: 2016 ILGWTKLMRSRKLDQATSDRA--LETIERNAKLQTQLIEDLLDVSRILQGKLNLNFGPIN 2073

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            L  ++    +++       +I I+ I +  +GS + D  RL Q+   ILSNA+ F+    
Sbjct: 2074 LVSVIEAAIETVRLSAQAKSIEIQTIFEFGVGSVLGDANRLQQVIWNILSNAIKFTPSEG 2133

Query: 707  TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
             V +K  +        V + G  I  +    VF+ F        R   G+GLGL+IV   
Sbjct: 2134 QVKIKLEQVGSQVQICVTDTGKGIAPEFLPYVFDYFRQADGATTRQFGGLGLGLAIVRHL 2193

Query: 765  INLHGGHVSISS-SDEGVTTINCRIP 789
            + LHGG V   S  +E   T   R+P
Sbjct: 2194 VELHGGTVQAESLGEEQGATFTVRLP 2219


>gi|328470858|gb|EGF41769.1| putative sensor histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 785

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 7/266 (2%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +++ L  +        + +  +    L  + +   +A + K+SF+  +S+ELR+P+  +
Sbjct: 229 VAVMLLVGSFLYQLQYRMHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGV 288

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G + L+       +     ++++ I  S   L+ ++NDILD + V+   ++L  +   L
Sbjct: 289 LGISQLIAEETKEPVT---KEHIKVILDSGQHLMTILNDILDFSKVEENKLELEEAPFHL 345

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             +L  V  +I   + E +I + V +D      F  D  RL QI   +  NA+ F+++G 
Sbjct: 346 EQVLTPVCSAIQPLIDEKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNEGH 405

Query: 707 T-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             +  +   ++   +  V + G  I  D    VFN F        RR  G GLGL+IV+ 
Sbjct: 406 VLIRTELNGEDKQLLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKK 465

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              L GG +++ S +   T     +P
Sbjct: 466 LTELMGGSITLKSVEGVGTQFIVTLP 491


>gi|90409825|ref|ZP_01217842.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum 3TCK]
 gi|90329178|gb|EAS45435.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum 3TCK]
          Length = 940

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 121/245 (49%), Gaps = 13/245 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  E    AD  K++F+ ++S+E+R+P+  ++G + LL  +    L  +Q  ++  
Sbjct: 386 QRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKT---DLTQEQRHHLLT 442

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   +++++NDILD + ++ G  KLN +   + DL+  ++ +  +   E  +   + 
Sbjct: 443 LLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKGLGFSIQ 502

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NGDFIFSVKN 725
            +      F AD+ R+ QI   +++NA+ F+ KG  V +   +D          I + ++
Sbjct: 503 CNFDYNSWFFADKSRIRQILFNVINNAIKFTDKGE-VSVSLNQDQCDDPRERRLIITTQD 561

Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I ED  + +F+ F     +   +  G GLGLSIV   +NL  G + + S+    +T
Sbjct: 562 TGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVSQLVNLMNGDIQLESTYGKGST 621

Query: 784 INCRI 788
               +
Sbjct: 622 FTITL 626


>gi|78356740|ref|YP_388189.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219145|gb|ABB38494.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 907

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 124/253 (49%), Gaps = 12/253 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + ++AE AL E  E   +AD+ K  F+ ++S+E R+P+  IIG ++++  ++   L++ Q
Sbjct: 358 ERIKAEHALREAKELAEEADKAKGEFLANISHEFRTPMNAIIGMSEVILKTE---LSAPQ 414

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++  ++ ++  LL+L+N ILD +  ++G   L  S  +L+    +V +   +      
Sbjct: 415 RNHLTVLNKAAHSLLDLLNTILDFSRYESGKATLALSPFMLHAPFTQVHEMFLSAAAAKG 474

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFI 720
           + +++     +  +   D  ++ QI   ++SNA+ F+  G  + +            D  
Sbjct: 475 LPLQLELAPDMPRAVEGDEGKIRQILVNLVSNALKFTDTG-NITITCKAFPAPSGRADIC 533

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           FSV + G  I ++   ++F+ F            G GLGLSI +   ++ GG +++ S+ 
Sbjct: 534 FSVSDTGIGIEKEKHSAIFDSFTQADGSYTRTYGGTGLGLSICKLLADMMGGSITVRSAP 593

Query: 779 EGVTTINCRIPSK 791
              +T    +P K
Sbjct: 594 RQGSTFTVCLPLK 606


>gi|299541797|ref|ZP_07052120.1| two-component sensor histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725535|gb|EFI66176.1| two-component sensor histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 621

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 154/395 (38%), Gaps = 27/395 (6%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           + + V  T +  G     F +LT ++ + ++      +     + ++++GV      GRI
Sbjct: 238 RKVRVYGT-DEIGQLAITFNHLTNRLQEAQSTTEAERRKLDSVLSNMTDGVIATDRKGRI 296

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N     L       ++ G  I ++     + Y+  D   +  A+  +F     +   
Sbjct: 297 ILINDPALELLHIS-RDITLGRPIASVLGI-DQEYSFEDLIHMNDAVNLNFS----TADA 350

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              L ++    +S+I             + D    E           K +  +  FV +V
Sbjct: 351 PYILRAN----FSVIQKETGFINGLITVLHDITEQE-----------KIEMDRREFVSNV 395

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT +  + + L        N     ++      +  ++ LVND+L L+ +D+ 
Sbjct: 396 SHELRTPLTTMRSYLEALADGAWKDENI-APTFLNVTQTETERMIRLVNDLLQLSRMDSS 454

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +LN   ++ N   N +         +  ++ + +          D  ++ Q+   I+S
Sbjct: 455 DYELNKDIVLFNSFFNRIIDRFEMSKSDK-VQFERLFPETSFYVEIDTDKITQVIDNIIS 513

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ +S  G  +       +      + ++G  IP++    +F+RF        R   G 
Sbjct: 514 NAIKYSPDGGNIRFGFTGQDDMLKVMISDDGMGIPKENVGRIFDRFYRVDRARARSMGGT 573

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I    I  HGG +   S +   TTI   +P
Sbjct: 574 GLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 608



 Score = 41.5 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 20/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T   +      +L N+T  +   D+   +   N   +EL  I        P    L
Sbjct: 264 EAQSTTEAERRKLDSVLSNMTDGVIATDRKGRIILINDPALELLHISRDITLGRPIASVL 323

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              +       + ++        FS   +    +  + +   +T  +        G I +
Sbjct: 324 G--IDQEYSFEDLIHMNDAVNLNFSTADAPYILRANFSVIQKETGFI-------NGLITV 374

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
             ++T Q  +E            +  T +      ++ L++G
Sbjct: 375 LHDITEQEKIEMDRREFVSNVSHELRTPLTTMRSYLEALADG 416


>gi|292491538|ref|YP_003526977.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580133|gb|ADE14590.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 366

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 157/363 (43%), Gaps = 12/363 (3%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
             + +D   + + +    GRI L N     +       L  G  I  +     R  +   
Sbjct: 9   FRQLLDAAPDAMVISDQYGRIVLVNAMAEQMLGYSRAEL-IGQPIEILVPEQHRPGHGQY 67

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT---FVNVTDSVRAE 552
             + +    T    E + L    +  S    E S+ P+     +L      ++T+    +
Sbjct: 68  RQEYYQHPRTRPMGEGRELHAVRKDGSLFSAEISLSPMEIEGNLLITSAIRDITERKEIQ 127

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL  + + L +++     F    S++L+ PL  +  +  LL     G L+S   +++E+
Sbjct: 128 KALERQTQELTRSNTELEQFAYVASHDLQEPLRMVSSYAQLLARRYRGQLDSDADEFIEF 187

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +T +  L+ND+L  + V  G     ++T   N ++ +V +S+   + E +  + V 
Sbjct: 188 MVDGATRMQALINDLLAYSRV--GTKGKPFTTTDGNQIIQQVLESLRFVIEETHAHLTVD 245

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               L   +ADR +L+Q+F  ++SNA+ F   +   + + A  +    IFSV +NG  I 
Sbjct: 246 ---PLPVLIADRAQLVQLFQNLISNALKFRGEETPKIHINAKEEGDQVIFSVADNGIGIE 302

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IP 789
               + +F  F     + +  G G+GLSI +  +  HGG + + S  +  TT      +P
Sbjct: 303 PQYAERIFLLFQRLHTKKEYPGTGIGLSICKKIVERHGGQIWLESKPDEGTTFFFTLPLP 362

Query: 790 SKE 792
           +KE
Sbjct: 363 AKE 365



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 39/132 (29%), Gaps = 10/132 (7%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             ++L     A+ I DQ   +   N    ++     A L   P     +E L      P 
Sbjct: 9   FRQLLDAAPDAMVISDQYGRIVLVNAMAEQMLGYSRAELIGQP-----IEILVPEQHRPG 63

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRGGTIWM---FENLTVQ 422
              ++             E  +      +G      + ++     G + +     ++T +
Sbjct: 64  HGQYRQEYYQHPRTRPMGEGRELHAVRKDGSLFSAEISLSPMEIEGNLLITSAIRDITER 123

Query: 423 VDLETKYNTLVK 434
            +++       +
Sbjct: 124 KEIQKALERQTQ 135



 Score = 39.5 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 21/134 (15%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
           F+ L D+    +   DQ G I+  N   ++     G    + IG+  ++   E  +    
Sbjct: 9   FRQLLDAAPDAMVISDQYGRIVLVNAMAEQML---GYSRAELIGQPIEILVPEQHR--PG 63

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI----------------DVSKE 298
                + + +   T   G  +    VR   S   A I++                D+++ 
Sbjct: 64  HGQYRQEYYQHPRTRPMGEGRELHAVRKDGSLFSAEISLSPMEIEGNLLITSAIRDITER 123

Query: 299 ITVNDQLTHTYEIL 312
             +   L    + L
Sbjct: 124 KEIQKALERQTQEL 137


>gi|289625887|ref|ZP_06458841.1| PAS [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330867533|gb|EGH02242.1| PAS protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 1185

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 98/461 (21%), Positives = 185/461 (40%), Gaps = 14/461 (3%)

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
           +      +   +  ELL  L   NK  E+      +        S+      W       
Sbjct: 464 QWSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSALPQPSLWGRIPQWV 520

Query: 400 LHVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
             V+  +   G    ++       +  ++  E + N  +  +    D +   + V    G
Sbjct: 521 FWVLALALLTGLVSLVWSSRLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKG 580

Query: 455 RIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           R+   N ++   L  + E          N+          +D  +L       F D    
Sbjct: 581 RLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIE 640

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L G    +    + +          +  +V++T+  R E+ L E      +A+E K+ F+
Sbjct: 641 LSGKRMDVWQWTVPFFAADGQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFL 700

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  IIG  +L     L   ++  SQ ++    S+T L+ L+ + LDLA +
Sbjct: 701 ASMSHEIRTPMGAIIGLLELECAHALRKGHTP-SQGLQVAHRSATELVALIGESLDLARI 759

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           +AG M+L+ +   L  L   V +  + +  E ++ +++  S+   G +  D  RL Q+  
Sbjct: 760 EAGGMQLSLTVTSLQALFEGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLH 819

Query: 693 KILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749
            +L NA+ F+ +GS V  + A  D+      ++++G  I  +  + +F  F   +     
Sbjct: 820 NVLGNALKFTRQGSVVLRVAALDDSSRVRIGIQDSGEGIEPERQQQIFQPFTQASDDTAA 879

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              G GLGLSI    + L  G +S+ SS    T +N  +P 
Sbjct: 880 HYGGSGLGLSITRQLVQLMKGDISLHSSPGEGTLVNIDLPL 920



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 27/288 (9%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + ++    +  ++ +     ++L++ ++    LFD +   ++ RD  G ++  N SY++
Sbjct: 532 LVSLVWSSRLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQ 591

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                 L    + ++M +         +      +    G        
Sbjct: 592 SLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQW 651

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR- 333
            V          G  G  +D+++   +  QL     +      A ++F  +   +     
Sbjct: 652 TVPFFAADGQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPM 711

Query: 334 -SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            + + L E++ A                     P Q      +     V    E+     
Sbjct: 712 GAIIGLLELECA-------------HALRKGHTPSQGLQVAHRSATELVALIGESLDLAR 758

Query: 393 HLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
               G  L + VTS      G I +F     + DLE +     + QG+
Sbjct: 759 IEAGGMQLSLTVTSLQALFEGVIELFSAQAREKDLELRLEFSEQAQGD 806


>gi|160877439|ref|YP_001556755.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160862961|gb|ABX51495.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315269641|gb|ADT96494.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1629

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 127/709 (17%), Positives = 266/709 (37%), Gaps = 74/709 (10%)

Query: 142  DLVAETQNDCAIKIEGRVSGSCAFLRILS---------LDGIYSELAETTLKCKKLSNHI 192
             L   T         G+++G    +R ++         L    S   + T +   L   +
Sbjct: 431  HLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVTKRTHALQQAL 490

Query: 193  SVFKVLFDSLDFLVW--HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
               + L D+++  +     D  G IL  N ++       G   ++ +G++  + +     
Sbjct: 491  LENQTLLDTINQQLLYSVTDPNGVILEVNDNF---CRISGYPREQLVGKTHAILQSGEHD 547

Query: 251  RMISSS------ALEKNFCETVSTLEHGNNKSYKIV--RVLNSFGE----AGIAIDVSKE 298
                 S      A +    E  +  +H   K +  V   V + +G+      + ID++  
Sbjct: 548  ASFWQSMWQQINAGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFVALRIDITDR 607

Query: 299  ITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELWEIDLAFL--ATNPS 351
                 +  +   +L N+  A     I   D    +   NR    L       +   + P+
Sbjct: 608  KLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPA 667

Query: 352  NDELLE--FLRSANKLPE-QLNWKTWKENIF-SVYKSSETHKDTWHLPNGQTLHVIVTSN 407
               LLE   +RSA    E   + + +   I+ +  + SET   T+   +G    V ++  
Sbjct: 668  PLHLLEEVMIRSAELSAEYGKDIQGFDVFIYKARAEGSETRNWTYVRKDGSQFQVSLSVT 727

Query: 408  PRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
                      G + +  ++++ +  +    T      +  +    G+  +   G     N
Sbjct: 728  AMRDSVGEIIGYLGIGVDISLMLLQQQALMTASNHLSKAAEVAQLGIWTWNLLGNSLEWN 787

Query: 461  PAFRSLWKTEE---------NRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDD 509
                +++   E            S   H  +IA   ++     +G   +  I  +   D 
Sbjct: 788  ERMFAIYDQPESLREQGLTYEHWSMRVHPDDIAFADAKLKGAVEGTAKYDPIFRVVRTDG 847

Query: 510  ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
              + +Q   ++  D             + +   +++T+  + E +L E  +    A   K
Sbjct: 848  SIRFVQAAAQVERDKQGHAI-------RVIGINLDITEQQQLEESLREAKQEADAASAAK 900

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            ++F+ ++S+E+R+P+  ++G   L++ +   SL+ +Q  YV     ++  LL L+NDILD
Sbjct: 901  SAFLANMSHEIRTPMNAVLGMLQLIQYT---SLSRQQQDYVNKTQTAAKSLLGLLNDILD 957

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLL 688
             + +D G + L+     +  L+ ++   ++    + ++ +    D       +AD+ RL 
Sbjct: 958  FSKIDVGKLILDLHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPPWLLADQLRLQ 1017

Query: 689  QIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            QI   +  NA+ F+  G  ++    L+   D      S+ + G  I ++  + +F  F  
Sbjct: 1018 QILVNLAGNALKFTHHGQVIVGIECLRHEADTVTVQISITDTGIGISDEQIERIFTGFEQ 1077

Query: 745  NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIP 789
                  RR  G GLGL+I +  I L G  + ++S     +        P
Sbjct: 1078 AESSTSRRFGGTGLGLAISKRLIGLMGSELHVTSKVGVGSRFWFDMTFP 1126


>gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15925724|ref|NP_373257.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus N315]
 gi|21281748|ref|NP_644834.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49484931|ref|YP_042152.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651128|ref|YP_184931.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus COL]
 gi|82749796|ref|YP_415537.1| two-component sensor histidine kinase [Staphylococcus aureus RF122]
 gi|87161483|ref|YP_492741.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193842|ref|YP_498627.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266466|ref|YP_001245409.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150392499|ref|YP_001315174.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156978350|ref|YP_001440609.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161508285|ref|YP_001573944.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316857|ref|ZP_04840070.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253730419|ref|ZP_04864584.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733820|ref|ZP_04867985.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|254663953|ref|ZP_05143425.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793557|ref|ZP_05642536.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9781]
 gi|258411137|ref|ZP_05681416.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9763]
 gi|258420959|ref|ZP_05683893.1| sensory box histidine kinase [Staphylococcus aureus A9719]
 gi|258423219|ref|ZP_05686111.1| two-component sensor histidine kinase [Staphylococcus aureus A9635]
 gi|258438598|ref|ZP_05689821.1| sensory box histidine kinase [Staphylococcus aureus A9299]
 gi|258443946|ref|ZP_05692284.1| two-component sensor histidine kinase [Staphylococcus aureus A8115]
 gi|258446238|ref|ZP_05694398.1| two-component sensor histidine kinase [Staphylococcus aureus A6300]
 gi|258449103|ref|ZP_05697209.1| two-component sensor histidine kinase [Staphylococcus aureus A6224]
 gi|258451348|ref|ZP_05699379.1| two-component sensor histidine kinase [Staphylococcus aureus A5948]
 gi|258454419|ref|ZP_05702387.1| two-component sensor histidine kinase [Staphylococcus aureus A5937]
 gi|262049449|ref|ZP_06022321.1| two-component sensor histidine kinase [Staphylococcus aureus D30]
 gi|269201709|ref|YP_003280978.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894298|ref|ZP_06302528.1| sensor protein kinase walK [Staphylococcus aureus A8117]
 gi|282902650|ref|ZP_06310543.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus C160]
 gi|282920738|ref|ZP_06328457.1| sensor protein kinase walK [Staphylococcus aureus A9765]
 gi|282921309|ref|ZP_06329027.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C427]
 gi|282927769|ref|ZP_06335383.1| sensor protein kinase walK [Staphylococcus aureus A10102]
 gi|283767809|ref|ZP_06340724.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           H19]
 gi|284023056|ref|ZP_06377454.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus 132]
 gi|295406883|ref|ZP_06816687.1| sensor protein kinase walK [Staphylococcus aureus A8819]
 gi|296276711|ref|ZP_06859218.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209433|ref|ZP_06925831.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297245918|ref|ZP_06929780.1| sensor protein kinase walK [Staphylococcus aureus A8796]
 gi|300911457|ref|ZP_07128906.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81650258|sp|Q6GD71|WALK_STAAS RecName: Full=Sensor protein kinase walK
 gi|81695623|sp|Q5HJX6|WALK_STAAC RecName: Full=Sensor protein kinase walK
 gi|81704769|sp|Q7A215|WALK_STAAW RecName: Full=Sensor protein kinase walK
 gi|81704904|sp|Q7A305|WALK_STAAM RecName: Full=Sensor protein kinase walK
 gi|81706517|sp|Q7A8E0|WALK_STAAN RecName: Full=Sensor protein kinase walK
 gi|123098092|sp|Q2G2U4|WALK_STAA8 RecName: Full=Sensor protein kinase walK
 gi|123722426|sp|Q2FKN7|WALK_STAA3 RecName: Full=Sensor protein kinase walK
 gi|123740988|sp|Q2YUQ2|WALK_STAAB RecName: Full=Sensor protein kinase walK
 gi|212288550|sp|A7WWQ7|WALK_STAA1 RecName: Full=Sensor protein kinase walK
 gi|212288551|sp|A6TXG9|WALK_STAA2 RecName: Full=Sensor protein kinase walK
 gi|212288552|sp|A5INR0|WALK_STAA9 RecName: Full=Sensor protein kinase walK
 gi|212288554|sp|A8YYU2|WALK_STAAT RecName: Full=Sensor protein kinase walK
 gi|5114231|gb|AAD40238.1|AF136709_2 histidine kinase YycG [Staphylococcus aureus]
 gi|13699936|dbj|BAB41235.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus N315]
 gi|14245786|dbj|BAB56181.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203183|dbj|BAB93884.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49243374|emb|CAG41791.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285314|gb|AAW37408.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus COL]
 gi|82655327|emb|CAI79707.1| two-component sensor histidine kinase [Staphylococcus aureus RF122]
 gi|87127457|gb|ABD21971.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201400|gb|ABD29210.1| sensory box histidine kinase VicK, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739535|gb|ABQ47833.1| PAS/PAC sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149944951|gb|ABR50887.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156720485|dbj|BAF76902.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160367094|gb|ABX28065.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725899|gb|EES94628.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728123|gb|EES96852.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787529|gb|EEV25869.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9781]
 gi|257840022|gb|EEV64487.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9763]
 gi|257843149|gb|EEV67564.1| sensory box histidine kinase [Staphylococcus aureus A9719]
 gi|257846548|gb|EEV70570.1| two-component sensor histidine kinase [Staphylococcus aureus A9635]
 gi|257848157|gb|EEV72149.1| sensory box histidine kinase [Staphylococcus aureus A9299]
 gi|257850830|gb|EEV74774.1| two-component sensor histidine kinase [Staphylococcus aureus A8115]
 gi|257855064|gb|EEV78007.1| two-component sensor histidine kinase [Staphylococcus aureus A6300]
 gi|257857536|gb|EEV80431.1| two-component sensor histidine kinase [Staphylococcus aureus A6224]
 gi|257860878|gb|EEV83695.1| two-component sensor histidine kinase [Staphylococcus aureus A5948]
 gi|257863513|gb|EEV86273.1| two-component sensor histidine kinase [Staphylococcus aureus A5937]
 gi|259162446|gb|EEW47016.1| two-component sensor histidine kinase [Staphylococcus aureus D30]
 gi|262073999|gb|ACY09972.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282315724|gb|EFB46108.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C427]
 gi|282590529|gb|EFB95607.1| sensor protein kinase walK [Staphylococcus aureus A10102]
 gi|282594146|gb|EFB99134.1| sensor protein kinase walK [Staphylococcus aureus A9765]
 gi|282597109|gb|EFC02068.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763343|gb|EFC03473.1| sensor protein kinase walK [Staphylococcus aureus A8117]
 gi|283461688|gb|EFC08772.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469248|emb|CAQ48459.1| sensor protein YycG [Staphylococcus aureus subsp. aureus ST398]
 gi|285815746|gb|ADC36233.1| Two-component sensor kinase [Staphylococcus aureus 04-02981]
 gi|294968348|gb|EFG44373.1| sensor protein kinase walK [Staphylococcus aureus A8819]
 gi|296885894|gb|EFH24829.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297177283|gb|EFH36536.1| sensor protein kinase walK [Staphylococcus aureus A8796]
 gi|298693341|gb|ADI96563.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300887636|gb|EFK82832.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302331791|gb|ADL21984.1| multi-sensor signal transduction histidine kinase, WalK
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312828582|emb|CBX33424.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129562|gb|EFT85554.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315197937|gb|EFU28270.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141437|gb|EFW33280.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144419|gb|EFW36184.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323440406|gb|EGA98119.1| two-component sensor histidine kinase [Staphylococcus aureus O11]
 gi|323443114|gb|EGB00733.1| two-component sensor histidine kinase [Staphylococcus aureus O46]
 gi|329731734|gb|EGG68094.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21189]
 gi|329732539|gb|EGG68889.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21193]
          Length = 608

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 153/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 286 RIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 343

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 344 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++           +         K      D  ++ Q+F  +++
Sbjct: 443 SDQINKEIIDFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 37.6 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +           D +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGM--------AKEDII 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++   +  +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|320102458|ref|YP_004178049.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
 gi|319749740|gb|ADV61500.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
          Length = 815

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 117/270 (43%), Gaps = 16/270 (5%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +            E  L    +A  +A++ K+ F+ ++S+E+R+P+  + G+++++ 
Sbjct: 356 AGIIEAHRVEQLQRETEEELRRAKQAAEEANQAKSRFLANISHEIRTPIAALCGYSEMVL 415

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             ++     ++ Q +  I  +S  LL LV+DILD + ++AG M + +  +    +L ++ 
Sbjct: 416 EPQME--EPERRQTLLAIRRNSRHLLELVDDILDFSKIEAGEMTIEHCPVSPRWILEDLL 473

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            ++  +     I I   I +    +   D  RL QI    LSNA+ F+ +   + L    
Sbjct: 474 TTMGGRARSKGIAIHHRIVEPIPDTITTDPTRLRQILLNFLSNAIKFTDRDKRIDLILQV 533

Query: 715 DN-----------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           +               +F+V++ G  I  +    +F  F         +  G GLGLSI 
Sbjct: 534 EPVPASGTLHSAANRLVFTVEDQGPGIAPENLSRLFQPFWQVDGSITRRYGGTGLGLSIS 593

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +    L GG + + S     +     +P +
Sbjct: 594 QRLAELLGGVIEVESEVGRGSRFRFALPLQ 623


>gi|301310672|ref|ZP_07216611.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300832246|gb|EFK62877.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 736

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 133/249 (53%), Gaps = 5/249 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +N+      E +L        ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +  
Sbjct: 481 CLNIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPL 539

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +++++++ I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    
Sbjct: 540 EPEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLM 599

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
           M E  + +K+    +     +D  RL Q+ +  ++NA+ F++KG   +  + + D    +
Sbjct: 600 MPE-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 658

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SVK+ G  IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S    
Sbjct: 659 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLESEVGV 716

Query: 781 VTTINCRIP 789
            +     +P
Sbjct: 717 GSKFTISLP 725


>gi|262382099|ref|ZP_06075237.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297276|gb|EEY85206.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 771

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 133/249 (53%), Gaps = 5/249 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +N+      E +L        ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +  
Sbjct: 516 CLNIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPL 574

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +++++++ I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    
Sbjct: 575 EPEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLM 634

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
           M E  + +K+    +     +D  RL Q+ +  ++NA+ F++KG   +  + + D    +
Sbjct: 635 MPE-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 693

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SVK+ G  IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S    
Sbjct: 694 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLESEVGV 751

Query: 781 VTTINCRIP 789
            +     +P
Sbjct: 752 GSKFTISLP 760


>gi|126656540|ref|ZP_01727801.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
 gi|126622226|gb|EAZ92933.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
          Length = 389

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 148/381 (38%), Gaps = 37/381 (9%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN---------- 492
           L E + +    G+I   NP+F +L       +        +  +  R             
Sbjct: 13  LPEPMLLIARKGQILAVNPSFSNLLGLSPQIVQGKMLFDLVTNSPDRVKQYLRNCSSSRE 72

Query: 493 -------------ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                        E+       A I     E  +L   L  L       +   L N +  
Sbjct: 73  MVLGSLAWSTKNGETCVCRCEGAAICPSSPEFPTL--ILLRLKKRESASTRFTLLNKKID 130

Query: 540 LTFVNVTDSVRAERAL-------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                +    RAE           +        + +K+ F+  +S+ELR+PL  I+G++ 
Sbjct: 131 ELAKEIRLRQRAEEERAKLLVQEQKARAEAENMNRLKDEFLSTISHELRTPLNAILGWSG 190

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L++  L    ++  + +E I  ++    +L+ D+LD++ +  G M+L+   I L  ++ 
Sbjct: 191 ILQSKNLD--EAEIRRALEIIERNAKSQAHLIEDLLDVSQIVTGRMRLHVRAIELLPVIE 248

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
               ++       NIR++ + D      + D +RL QI   +LSNA+ F+ K   V +  
Sbjct: 249 AAIDTLKPAADAKNIRLQAVLDPAASPVLGDSERLQQIVWNLLSNAVKFTPKHGCVQIAL 308

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
            + N      V + G  I  +    VF RF        R   G+GLGL+IV   + LHGG
Sbjct: 309 QQINSHVEIVVADTGQGISAEFLPYVFERFRQANTSMTRSFGGLGLGLAIVRQLVELHGG 368

Query: 771 HVSISSS-DEGVTTINCRIPS 790
            V   S  +    T   ++PS
Sbjct: 369 TVQAESPGEGQGATFTVKLPS 389


>gi|310643958|ref|YP_003948716.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309248908|gb|ADO58475.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 556

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 10/258 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+ML      +  +    L    EA   A   K  F+  +S+E+R+P+  +IG  DLL  
Sbjct: 137 QSMLLHQKTQELEKMNSELIAAKEAAEIAANAKTEFLAMMSHEIRTPMNGVIGMIDLLME 196

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++L +    Q +Y + I  S+  L+ ++NDILD   +++G M++      L   + EV  
Sbjct: 197 TELQN---DQQEYADIIRRSADALVAVINDILDFTKLESGKMEVEEYPFDLVSCIKEVFS 253

Query: 657 SIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +++  N+ +    D +       D  RL Q+   ++SNA+ F+ +G   +  + ++
Sbjct: 254 LFTVEVNRKNLELVYFLDEQTPPVLYGDMGRLRQVLINLVSNAVKFTDQGGVYVFASVKE 313

Query: 716 NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
             D      FSVK+ G  I       +F+ F         +  G GLGL+I ++ +++ G
Sbjct: 314 RSDNGLTVEFSVKDTGIGIDPAKVGRLFHPFSQLDSSMTRKYGGTGLGLAICKTLVDMMG 373

Query: 770 GHVSISSSDEGVTTINCR 787
           G + + +S E     +  
Sbjct: 374 GDIRVDTSGEQGVAFHFT 391


>gi|463195|gb|AAA20829.1| pectate lyase [Pseudomonas viridiflava]
          Length = 896

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 249 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQYDYLGTI 305

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 306 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 365

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 366 YRDTPLALSGDPLRLRQILTNLVSNAIKFTRQGTIVARAMLEDETEEHAQLRISVQDTGI 425

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +   R   G GLGL I +  I   GG + + S+    +    
Sbjct: 426 GLSSQDVRALFQAFSQADNSISRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 485

Query: 787 RI 788
            +
Sbjct: 486 SL 487


>gi|327308180|ref|XP_003238781.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
 gi|326459037|gb|EGD84490.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
          Length = 2415

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+T +IG ++LLK +K   L+ KQ  YV
Sbjct: 1868 AEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATK---LDPKQDVYV 1924

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     E  +   
Sbjct: 1925 ESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLDTV 1984

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
               D        + D  RL QIF  +LSN+  F+  GS V ++A  +            V
Sbjct: 1985 EDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPVGS-VTVRAIVEEDTPEKIRVTCKV 2043

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I E+    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 2044 ADTGIGISEEQLDRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGE 2103

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2104 GTTVTFTL 2111


>gi|314935218|ref|ZP_07842571.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656553|gb|EFS20292.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp.
           hominis C80]
          Length = 608

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 160/399 (40%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 225 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 284

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  L  G ++ N+      +  E    +  + +I   ++E     G
Sbjct: 285 RIVNDMAIKMLGMAKEDL-IGYYMLNVLKIEGDFSLEEIQENNDSILIDMNEEE-----G 338

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++ S +        N   +    +VT+  + ER               +  FV +V
Sbjct: 339 IIARVNFSTI-VQDTGFVNG-YIAVLHDVTEQQQVERE--------------RREFVANV 382

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+       N     ++      +  ++ LVND+L L+ +D  
Sbjct: 383 SHELRTPLTSMNSYIEALEEGAWKDEN-LAPSFLSVTREETERMIRLVNDLLQLSKMDNE 441

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 442 TEQITKEIVDFNMFINKIINRHEMAA--KDTTFVREIPNETIFTEIDPDKMTQVFDNVIT 499

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 500 NAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 559

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 560 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 598



 Score = 37.6 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +    L        +
Sbjct: 252 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMAIKMLGMAKEDL--------I 303

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ +  K+    + +  +EN  S+       +      N  T  ++  +    G I +
Sbjct: 304 GYYMLNVLKIEGDFSLEEIQENNDSILIDMNEEEGIIARVNFST--IVQDTGFVNGYIAV 361

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 362 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 403


>gi|254443602|ref|ZP_05057078.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257910|gb|EDY82218.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1279

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 130/245 (53%), Gaps = 10/245 (4%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R L    +   ++D++K++F+ ++S+E+R+P+  I+GF+ ++ T K    + ++  + + 
Sbjct: 883  RELERAKKHAEESDQLKSAFLANMSHEIRTPMNAIMGFSSMIVTDKFS--DDERRDFTKI 940

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-----I 667
            I  + T L  L++DILDL+ ++AG +K+      L+ LL+E+  S A ++ E +     +
Sbjct: 941  IYNNCTSLATLIDDILDLSAIEAGQIKIAKRAFNLDGLLDELSDSFALQVSEKDPTRFKL 1000

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNN 726
                  + +    V+D  RL QI S ++SNA+ F+ +G   V  +  +      F++++ 
Sbjct: 1001 LFTRPPELQSAIVVSDPLRLRQILSNLISNAIKFTQEGHVYVRYEFEKHRPHVRFTIEDT 1060

Query: 727  GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I +    +++ RF  + +      RG GLGL I ++ I L GG +S+ S +   +  
Sbjct: 1061 GIGISQKHLDAIWQRFRKIEDDTNTLFRGTGLGLPITKNLIELLGGEISVESEEGKGSRF 1120

Query: 785  NCRIP 789
               IP
Sbjct: 1121 TFSIP 1125


>gi|218896506|ref|YP_002444917.1| sensor histidine kinase ResE [Bacillus cereus G9842]
 gi|228900156|ref|ZP_04064389.1| hypothetical protein bthur0014_13630 [Bacillus thuringiensis IBL
           4222]
 gi|218543681|gb|ACK96075.1| sensor histidine kinase ResE [Bacillus cereus G9842]
 gi|228859562|gb|EEN03989.1| hypothetical protein bthur0014_13630 [Bacillus thuringiensis IBL
           4222]
          Length = 591

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDSKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|88861266|ref|ZP_01135898.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
 gi|88816747|gb|EAR26570.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
          Length = 896

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 9/249 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQS 607
            +    L  + +   KA++IK+ F+ ++S+E+R+P+  I G   L L+ + +     K  
Sbjct: 512 YKQTEKLRLEKQKSDKANKIKSEFLANMSHEIRTPINGIKGLHYLVLQQTDM----RKVK 567

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+     +  +LL ++NDILD + ++AG ++L YS +    L ++++  + T+++  +I
Sbjct: 568 EYIHQAENAVDVLLKVLNDILDFSKIEAGKLQLEYSEVYFTALFSQLETLVRTELNNKDI 627

Query: 668 RIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKN 725
            + +        S   D+ RL Q+   +L+NA+ F+     + L     DN    FSVK+
Sbjct: 628 TLLIHYPKISPLSMFTDKIRLKQVLLNLLNNAIKFTEPDGKIELTMVQLDNKQLRFSVKD 687

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  I +   K +F+ F    +   R   G GLGLSI +  + L GG +   S     + 
Sbjct: 688 NGIGIADLAQKQLFDAFTQADNSTSRKYGGTGLGLSICKHLVELMGGKIGFVSELNVGSE 747

Query: 784 INCRIPSKE 792
               +P  E
Sbjct: 748 FYFTLPQGE 756


>gi|298488282|ref|ZP_07006315.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157221|gb|EFH98308.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1200

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 98/461 (21%), Positives = 185/461 (40%), Gaps = 14/461 (3%)

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
           +      +   +  ELL  L   NK  E+      +        S+      W       
Sbjct: 485 QWSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSALPQPSLWGRIPQWV 541

Query: 400 LHVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
             V+  +   G    ++       +  ++  E + N  +  +    D +   + V    G
Sbjct: 542 FWVLALALLTGLVSLVWSSRLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKG 601

Query: 455 RIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           R+   N ++   L  + E          N+          +D  +L       F D    
Sbjct: 602 RLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIE 661

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L G    +    + +          +  +V++T+  R E+ L E      +A+E K+ F+
Sbjct: 662 LSGKRMDVWQWTVPFFAADGQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFL 721

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  IIG  +L     L   ++  SQ ++    S+T L+ L+ + LDLA +
Sbjct: 722 ASMSHEIRTPMGAIIGLLELECAHALRKGHTP-SQGLQVAHRSATELVALIGESLDLARI 780

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           +AG M+L+ +   L  L   V +  + +  E ++ +++  S+   G +  D  RL Q+  
Sbjct: 781 EAGGMQLSLTVTSLQALFEGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLH 840

Query: 693 KILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749
            +L NA+ F+ +GS V  + A  D+      ++++G  I  +  + +F  F   +     
Sbjct: 841 NVLGNALKFTRQGSVVLRVAALDDSSRVRIGIQDSGEGIEPERQQQIFQPFTQASDDTAA 900

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              G GLGLSI    + L  G +S+ SS    T +N  +P 
Sbjct: 901 HYGGSGLGLSITRQLVQLMKGDISLHSSPGEGTLVNIDLPL 941



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 27/288 (9%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + ++    +  ++ +     ++L++ ++    LFD +   ++ RD  G ++  N SY++
Sbjct: 553 LVSLVWSSRLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQ 612

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                 L    + ++M +         +      +    G        
Sbjct: 613 SLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQW 672

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR- 333
            V          G  G  +D+++   +  QL     +      A ++F  +   +     
Sbjct: 673 TVPFFAADGQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPM 732

Query: 334 -SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            + + L E++ A                     P Q      +     V    E+     
Sbjct: 733 GAIIGLLELECA-------------HALRKGHTPSQGLQVAHRSATELVALIGESLDLAR 779

Query: 393 HLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
               G  L + VTS      G I +F     + DLE +     + QG+
Sbjct: 780 IEAGGMQLSLTVTSLQALFEGVIELFSAQAREKDLELRLEFSEQAQGD 827



 Score = 37.6 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 34/291 (11%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
           LR+L        L E+ +    + N +  +      L      R   G   W+   +  +
Sbjct: 440 LRLLDTYDQARALVESGVADATIQNEVGAYLFPAGQLKV---ARSVDGQ--WSPDRF--S 492

Query: 226 TETEGIVFQKAIGESRKLFK----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
                      + ++ + F       I+ + + S+  + +    +          + ++ 
Sbjct: 493 VIKTQPELLGILNKALEEFPVAELRSIRLKWLGSALPQPSLWGRIPQWV------FWVLA 546

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ----------NRYLQFH 331
           +    G   +      ++ +  +L    ++   L    A+FD              L   
Sbjct: 547 LALLTGLVSLVWSSRLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISC 606

Query: 332 NRSFVELWEIDLAFLATNP-SNDELLEFLRSANKLPEQLNWKTWKENIFS--VYKSSETH 388
           NRS+ +   I    +     ++  L+    +     + LN     + +FS    + S   
Sbjct: 607 NRSYEQSLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKR 666

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            D W      T+          G +  + ++T +  LE +    +++  + 
Sbjct: 667 MDVWQW----TVPFFAADGQLQGLLGGWVDITERKRLEQQLQEAMRLAAQA 713


>gi|289646215|ref|ZP_06477558.1| PAS [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 1185

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 98/461 (21%), Positives = 185/461 (40%), Gaps = 14/461 (3%)

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
           +      +   +  ELL  L   NK  E+      +        S+      W       
Sbjct: 464 QWSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSALPQPSLWGRIPQWV 520

Query: 400 LHVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
             V+  +   G    ++       +  ++  E + N  +  +    D +   + V    G
Sbjct: 521 FWVLALALLTGLVSLVWSSRLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKG 580

Query: 455 RIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           R+   N ++   L  + E          N+          +D  +L       F D    
Sbjct: 581 RLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIE 640

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L G    +    + +          +  +V++T+  R E+ L E      +A+E K+ F+
Sbjct: 641 LSGKRMDVWQWTVPFFAADGQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFL 700

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  IIG  +L     L   ++  SQ ++    S+T L+ L+ + LDLA +
Sbjct: 701 ASMSHEIRTPMGAIIGLLELECAHALRKGHTP-SQGLQVAHRSATELVALIGESLDLARI 759

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           +AG M+L+ +   L  L   V +  + +  E ++ +++  S+   G +  D  RL Q+  
Sbjct: 760 EAGGMQLSLTVTSLQALFEGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLH 819

Query: 693 KILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749
            +L NA+ F+ +GS V  + A  D+      ++++G  I  +  + +F  F   +     
Sbjct: 820 NVLGNALKFTRQGSVVLRVAALDDSSRVRIGIQDSGEGIEPERQQQIFQPFTQASDDTAA 879

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              G GLGLSI    + L  G +S+ SS    T +N  +P 
Sbjct: 880 HYGGSGLGLSITRQLVQLMKGDISLHSSPGEGTLVNIDLPL 920



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 27/288 (9%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + ++    +  ++ +     ++L++ ++    LFD +   ++ RD  G ++  N SY++
Sbjct: 532 LVSLVWSSRLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQ 591

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                 L    + ++M +         +      +    G        
Sbjct: 592 SLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQW 651

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR- 333
            V          G  G  +D+++   +  QL     +      A ++F  +   +     
Sbjct: 652 TVPFFAADGQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPM 711

Query: 334 -SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            + + L E++ A                     P Q      +     V    E+     
Sbjct: 712 GAIIGLLELECA-------------HALRKGHTPSQGLQVAHRSATELVALIGESLDLAR 758

Query: 393 HLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
               G  L + VTS      G I +F     + DLE +     + QG+
Sbjct: 759 IEAGGMQLSLTVTSLQALFEGVIELFSAQAREKDLELRLEFSEQAQGD 806


>gi|260779552|ref|ZP_05888442.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604361|gb|EEX30665.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 1142

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 172/414 (41%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L+   +  +  G  I ++    +        D  D     I   +   +     + 
Sbjct: 656  RYLELFVFPQGLIQVGRPIADVIRHNAEQGLCGPGDPEDHVRRRIYHLEQGTRHTSSRV- 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE+AL + NE+L +               
Sbjct: 715  RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANESLEERVHERTQELEQLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L          + S+++E   
Sbjct: 775  LVSATQRSEHESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAQEEETKRLSKHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + +N  +  +ND+L+ +    +    +  I  +++  
Sbjct: 835  EAAE---DLIDDLLDISRLESGKLDINVHSFAINDVLSNLNAEFSALAKQQGIEFEMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++ KG  V+L   R        V +NG+ I ED 
Sbjct: 890  PSQLIVQSDPKLLRRVVQNFLTNAFRYNPKG-KVVLGVRRVGQQARIEVWDNGTGIDEDK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F   +     +G+GLGL+I +   ++ G  +S+ S     +  +  +
Sbjct: 949  QQEIFEEFTRGSQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPGKGSVFSITL 1002



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 76/228 (33%), Gaps = 15/228 (6%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFVFPQGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCG-PGDPEDHVRRRIYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             F ++TV  D E       +   E          V      ++  N    S  +  E+ 
Sbjct: 735 MSFTDITVFRDAEQALKDANESLEER---------VHERTQELEQLNKQLVSATQRSEHE 785

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLE 519
               +  R +AA         +   LFA+ ++    ++E K L   +E
Sbjct: 786 SQSKS--RFLAAVSHDLMQPLNAARLFASSLSEVAQEEETKRLSKHIE 831


>gi|253563619|ref|ZP_04841076.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947395|gb|EES87677.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 633

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 129/249 (51%), Gaps = 5/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +    RA + + E      +A+++K++F+ ++S+E+R+PL  I+GF++LL    +   
Sbjct: 385 YYIHILKRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLS---MVED 441

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  +Y   I  ++ +LL L+NDILD++ +++G+   + + +  N L++EV+Q    ++
Sbjct: 442 KEEMLEYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRI 501

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             + + +          F  D+ RL+Q+ + ++ NA+ F+S+G   I    +D     F 
Sbjct: 502 RTDEVSLSFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFY 561

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  +  + C+ VF RFV   +    +G GLGLSI +  I   GG + + S     +
Sbjct: 562 VSDTGCGMSVEQCEHVFERFVK--YNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGS 619

Query: 783 TINCRIPSK 791
                +P +
Sbjct: 620 VFWFTLPYR 628


>gi|39997670|ref|NP_953621.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984562|gb|AAR35948.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298506611|gb|ADI85334.1| sensor histidine kinase response regulator, Hpt domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 850

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 153/399 (38%), Gaps = 29/399 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS----NPAFRSLWKTEE 471
             +L    D +  +   +      +D    G  +   DG  KL     +     + +  +
Sbjct: 41  HSDLGRAKDPQEIFRATLTQLRRVLDCRMTGFLISCSDGSFKLVSWEPDEGHDEIQRIID 100

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------- 524
            ++  GT    +    +     +D   L   ++ +    R    G L   S S       
Sbjct: 101 AKIVDGTFAWALNRNQAILVPLADDRSLLLHVVATRSRIRGMFAGILPGSSHSPDAATLN 160

Query: 525 ----VLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQH 575
               ++      L + +      +   S+        R L    E    A   K+ F+ +
Sbjct: 161 AVSVIMHTCAHSLESTELYSMVRDTLASLEQRVQERTRDLAAAREQAESASRAKSDFLAN 220

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+G TDLL    L     +Q QY+  I  S+  L+ ++ DILD + ++A
Sbjct: 221 MSHEIRTPLNGIMGMTDLLLGGGLNQT--QQHQYLGAIKGSADCLMGVIGDILDFSKIEA 278

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKI 694
           G ++L+     L   + +  +S++ +  E  + +     +  +   + D  +L Q+   +
Sbjct: 279 GKVELDPVPFSLRTFVGQAVRSLSARAAEKGVELVCDPREDVIDPLIGDCGKLRQVLVNL 338

Query: 695 LSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           + NA+ FS  G  V+               FSV + G  I  +    +FN F        
Sbjct: 339 VGNAIKFSDGGEVVVAVETAAVEGNEVLLRFSVSDQGCGIAPEALDRIFNVFEQADSSTT 398

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +R  G GLGL+I    + L GG + + S+    +T    
Sbjct: 399 KRFGGTGLGLAISRRIVQLMGGDIRVESAPGEGSTFYFT 437


>gi|330877094|gb|EGH11243.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 917

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|254412228|ref|ZP_05026003.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181194|gb|EDX76183.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 423

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 150/381 (39%), Gaps = 11/381 (2%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           + ++             +   E  +   +G  +    G I+ +N A  +L   E+ RL  
Sbjct: 45  QEISAAHQATENER---RKYQELFEFAPDGYFITDASGTIQDANQAAATLLNIEKRRLIG 101

Query: 477 GTHIRNIAATCSRYY-------NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                 IA T  R +             D    ++    +     + +    ++  +   
Sbjct: 102 KPLAVFIADTSKRTFLSQLNQLTHLSSPDFPTTLLYRDWEIFIKPRQSEPFPAEISISAI 161

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + P      +   +          +L  + EA ++  E+K+ F+Q VS+E R+PL  I  
Sbjct: 162 LNPQSEIVGLRWLIRDMTYRHQAESLRRELEAEKEFSELKSRFIQTVSHEFRTPLNMIYV 221

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL  S  G    K +Q ++    +   +  +++D+L  +   A  ++LN + + L  
Sbjct: 222 SAQLLARSHDGLTEEKCNQLLQRTDKAVRRITKILDDVLVFSKASADKLELNPTLLDLEQ 281

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
               + +        +   ++  + G   S   D + L QI   +LSNA+++S   ST+ 
Sbjct: 282 FCQTLVEDYQVIAGSSK-TLQFNAPGTKHSVCLDEKLLYQILGNLLSNAINYSQPNSTIT 340

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           L     +    F +++ G  IP +    +F+ F    +     G GLGLSIV+  I +HG
Sbjct: 341 LTLTYPDHTVCFQIQDQGIGIPREDIPRLFDPFHRARNVSNLPGTGLGLSIVKKAIEIHG 400

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +++ S     TT    +P 
Sbjct: 401 GTINVHSEVGIGTTFTVTLPL 421



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 22/152 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP----- 350
           +      ++     E+         I D +  +Q  N++   L  I+   L   P     
Sbjct: 49  AAHQATENERRKYQELFEFAPDGYFITDASGTIQDANQAAATLLNIEKRRLIGKPLAVFI 108

Query: 351 ---SNDELLEFLRSANKL-----PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              S    L  L     L     P  L ++ W   IF   + SE        P   ++  
Sbjct: 109 ADTSKRTFLSQLNQLTHLSSPDFPTTLLYRDW--EIFIKPRQSEPF------PAEISISA 160

Query: 403 IVTSNPR-GGTIWMFENLTVQVDLETKYNTLV 433
           I+       G  W+  ++T +   E+    L 
Sbjct: 161 ILNPQSEIVGLRWLIRDMTYRHQAESLRRELE 192


>gi|16127449|ref|NP_422013.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221236261|ref|YP_002518698.1| two-component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|13424901|gb|AAK25181.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220965434|gb|ACL96790.1| two-component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 657

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 141/316 (44%), Gaps = 13/316 (4%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +A + +R   +       A   T+     K+L+   E   D V   S+I   N       
Sbjct: 195 LANSLARRLAQPMERLSEAMHETAVGGRFKALE---ETADDDVFR-SLIASFNHLVARLE 250

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            N  D   A   L +  +    A+ +K+ F+ ++S+E+R+PL  ++   D++   +L  +
Sbjct: 251 CNDQDLRGAMAELVKARDDANAANVLKSHFLANMSHEIRTPLNGVLAMADVMAMDQLSDI 310

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + +  I  S  +LL ++ND+LDL+ ++AG +++      +  L   ++++   + 
Sbjct: 311 ---QRERLAVIRESGAVLLGVLNDVLDLSKIEAGRLEIQDRPFDIAQLAQSIRETFVPQA 367

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
               +  +V ++    G +  D  RL QI   ++SNA+ F+  G+  V   +A D     
Sbjct: 368 RAKGLAFEVGVAPEAQGLWRGDADRLRQILGNLISNALKFTLDGAVAVRFASAEDGSGLR 427

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  I  ++   +F++FV       RR  G GLGL+I      +  G + + S +
Sbjct: 428 IDVADTGIGISPEILPRLFDKFVQADSTTTRRFGGSGLGLAICRELAAMMNGSIKVQSRE 487

Query: 779 EGVTTINCR--IPSKE 792
              +T      +P +E
Sbjct: 488 GRGSTFTVLVGLPREE 503


>gi|330802602|ref|XP_003289304.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum]
 gi|325080602|gb|EGC34150.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum]
          Length = 1824

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 132/271 (48%), Gaps = 22/271 (8%)

Query: 533  LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            L  A T+    +  D  R    L  + EA  +A++ K++FV  VS+E+R+PL+ +IG +D
Sbjct: 1108 LRMAGTLRDMTSRKDMQR----LIFEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSD 1163

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  +   +L+ +Q  YV+ I  SS  LL ++NDILD + +++  +K+      + +   
Sbjct: 1164 LLLET---NLSEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQ 1220

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-L 710
             V   ++   ++  + I +     +   V  D  R+ Q+   +LSNA+ F+S+G  +  +
Sbjct: 1221 AVIHMLSVAAND-EVDILLRVPPNVPKIVFGDAMRIRQVLLNLLSNAIKFTSRGHILTDI 1279

Query: 711  KA---------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
                         D      ++++ G  IP+ +  S+F  F    +   R   G GLGLS
Sbjct: 1280 SVDESVPTSNSEEDIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLS 1339

Query: 760  IVESFI-NLHGGHVSISSSDEGVTTINCRIP 789
            I +  I  + GG + +SS     +T  C IP
Sbjct: 1340 ITKRLIEEVMGGTIQVSSIVNQGSTFKCIIP 1370


>gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
 gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
          Length = 949

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|239908975|ref|YP_002955717.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798842|dbj|BAH77831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 939

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 13/300 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTMLTFVNVTDSVRAERALTEKNE 560
           +  S DDE   L   + L    +  Y +    L   +T        ++ +  + L E   
Sbjct: 355 VTISGDDEISELARYISLYISQITNYKLNLENLVKERTRRLQEKNVENEKIRQKLEEAKV 414

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              +A++ K  F+  V++E+R+P+  I G  D L ++   +L + Q   +  I  SS  L
Sbjct: 415 VAEQANKTKTDFLAKVTHEVRTPMNAIKGMNDYLLST---ALTADQRDCLTAIKESSDHL 471

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L +VND+LDL+ ++AG + L      L  ++    + +    ++ N+ +  + D      
Sbjct: 472 LTIVNDLLDLSKIEAGKIVLETIDFNLKSVIESTTRLMLPLANKKNLELVTLLDDSADVV 531

Query: 681 V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDM 734
           V  D  RL QI   + +NA+ F+  G   +  +A         +   +V + G  I    
Sbjct: 532 VRGDPARLRQILLNLTNNALKFTKLGGIAVTASATTDATAGGYEIAITVSDTGVGIERAR 591

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             ++F  F        R   G GLGLS+ +  + L  G +++ S+    ++   R+P  +
Sbjct: 592 LDTIFEPFTQGDDSTSRKFGGTGLGLSVCKQLVGLMHGAITVESTPGEGSSFTVRLPLAQ 651


>gi|150402298|ref|YP_001329592.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033328|gb|ABR65441.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 614

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 122/238 (51%), Gaps = 4/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + L++ D++K+  +  VS+ELR+PLT+I+G+  LLK    G LN KQ ++V  IS
Sbjct: 377 LKHSYDELKEVDDLKSELISIVSHELRTPLTSILGYIQLLKDETAGKLNEKQKEFVSVIS 436

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S  L  + +++ DL +VD  ++   ++ + + + + E+  S+       NI +    D
Sbjct: 437 ENSERLKRITDNMSDLVSVDDDVLDGEFNKLNIKNAVEEIISSLQHFADSRNIILLEDVD 496

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   D+ ++ Q+ + ++ NA+ FS K + V +    DNG+    + + G  IP++ 
Sbjct: 497 DS--YIKGDKSKIHQVLANLIENAVKFSKKQTKVTVTGFEDNGNIHLEITDQGPGIPKEH 554

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F+RF       +R   G GLGL++ +  +  HGG + + S     T ++   P 
Sbjct: 555 LDKIFDRFYQIDSSSKREIGGSGLGLAVCKKIVESHGGSIWVESKIGKGTIVHVLFPL 612


>gi|115379358|ref|ZP_01466465.1| response regulator/sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825019|ref|YP_003957377.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115363640|gb|EAU62768.1| response regulator/sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398091|gb|ADO75550.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 850

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 91/520 (17%), Positives = 179/520 (34%), Gaps = 47/520 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                  Q TH  +I       IAI        +F N +  ++  +    L   P ++ +
Sbjct: 344 ARAETEAQRTHLQDIFMQAPAIIAILGGPQHVFEFANTACQKV--LGHRELLGKPIHEAV 401

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSV---------YKSSETHKDTW----HLPNGQTLHV 402
            +  +    L ++        +   V          +  E + D +     +P+G     
Sbjct: 402 PDLKQHGPALLDKAYHTGKALSGREVCLPLRYTLGGRIEERYWDFFFQPRRMPDGAV--- 458

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGR 455
                  G  ++ FE +T Q+    +                   D L   VA      R
Sbjct: 459 ------DGMMVFAFE-VTDQLQARQEVELSREEARRSAAQLQAITDTLPALVAYLDLAER 511

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            + +N A+ S +  +   +        +  T + +        +   +  +   E    +
Sbjct: 512 YRFANRAYESWFGVKPEEV--------LGKTAAEFVGPEAYEGVKEKLQQALSGETIRYE 563

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             L++     +      LP+         +           ++ E +R A  +++ F+  
Sbjct: 564 VELQVRGGRKIYMQSNYLPDRDAQGHVRGIVVLAHDLTERRKEEEIVRNAVRLRDEFLSV 623

Query: 576 VSYELRSPLTNIIGFTDLLKT----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            S+EL++PLT +      L              K   +VE        L  L+ D+LD++
Sbjct: 624 ASHELKTPLTPLSLKLQALARAVEHEPETPFTQKVRSHVEAGRKQLNRLSVLIGDLLDVS 683

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            + +G M+L +  +    L+ EV   +  +       + V + G L     DR R  Q+ 
Sbjct: 684 RISSGQMRLRWEPVDFAVLVREVVARLEPEALRAESPLNVEAPGSLMG-STDRLRFEQVV 742

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             +L+NA+ +   G ++ L    + G  +  VK++G  I  +    +F RF         
Sbjct: 743 ENLLTNAIKYG-AGKSIQLVLKEEAGGVVLRVKDHGIGIAPEHQARIFERFERAVSERNY 801

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G+GLGL I  + + L GG + + S           +P +
Sbjct: 802 GGLGLGLYITRTIVELLGGTIRVQSEPGQGAAFTVDLPRE 841


>gi|330966578|gb|EGH66838.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 917

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|325915224|ref|ZP_08177547.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538584|gb|EGD10257.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 765

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 12/253 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                 E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  
Sbjct: 88  QRHGELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLD 144

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +       
Sbjct: 145 QRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAESR 204

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----F 719
            +R+ +  +  +   V  D  RL Q+   ++ NA+ F+ +GS + ++  R          
Sbjct: 205 QLRLGLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-IDIQLRRLGETRAQHLL 263

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I  D    +F  F        R   G GLGL+I +  I+L GG + + S 
Sbjct: 264 RFQVRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESE 323

Query: 778 DEGVTTINCRIPS 790
                T    IP 
Sbjct: 324 PGRGATFWFEIPL 336


>gi|160936693|ref|ZP_02084060.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440484|gb|EDP18229.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1071

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 113/676 (16%), Positives = 244/676 (36%), Gaps = 52/676 (7%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
            I G        + +  +     E  ET     K+    ++      ++       D+  
Sbjct: 117 FINGYRVSYTTMVDVTDMMQARLEQKETRQDFDKMMQEQAMIMSAL-NISVSKHLIDEHY 175

Query: 214 DILWANISYKKNTETEGIVFQKAI-GESRKLFK------EEIKKRMISSSALEKNFCETV 266
             + AN  Y K        ++        + F       E +  ++ +      +  E +
Sbjct: 176 TCVLANEYYYKLIGYSKARYEALFHNHPDEFFANNPEGWELLTSKVEAVLKNNGDGYEAI 235

Query: 267 STL--EHGNNKSYKIVRVLNSFGEAGIAI------DVSKEITVNDQLTHTYEILHNLTVA 318
             +  E G++   K+V         G  I      DV++ +   ++       +  ++V+
Sbjct: 236 VPMKYEDGSSYWVKLVSFFTDEYIDGFRISYTVMTDVTELMRTKNEQEMLMSAME-VSVS 294

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATN---PSNDELLEFLRSANKLPEQLNWKTWK 375
             + D++  + + N  +  +         T      +    +       + E +      
Sbjct: 295 RHLMDEHFTVIWANECYYRMIGYTKEDYETRFHNCCDAYFWDNETGLRIINENI------ 348

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RGGTIW--MFENLTVQVD-LET 427
           +++ +  + S        +P+G    V +          G  I      ++T  V   + 
Sbjct: 349 QSMTNADEKSYEAYLPLKMPDGSMRWVKIVGFLTDEYMDGIQIAYTTMIDVTDLVQTQKE 408

Query: 428 KYNTLVKVQGETIDH--LSEGVAVFGPDGRIK-LSNPAFRSLWKTEENRLSPGTHIRNIA 484
           +      + G  + H  L +G+ +     RIK + + +   +   +   +  G   R + 
Sbjct: 409 RSIAYENIPGFIVRHRILPQGIVMLDASERIKDIFDVSMEDIAAIDPLEVMSGES-RELI 467

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPNAQTMLTF 542
            +        +  +    I   +D +R     +  ++ +SD  +  S+  +         
Sbjct: 468 ISHFPGLRRGEPLEATIRIKDKYDRDRWFHFNSTCIDTISDDPVYLSMF-IDITDITELR 526

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                       L    EA + A+  K+ F+  +S+++R+P+  I G  ++         
Sbjct: 527 ELQRKLEERTDMLNSALEAAKYANAAKSDFLSRMSHDIRTPMNVITGMAEIAAAHIGDQ- 585

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +    ++ I  SS  LL L+ND+LD++ ++ G   ++ + + L D L E+   +   +
Sbjct: 586 -DRVKDCLQKIRLSSHHLLGLINDVLDMSKIENGNFSISMAPMCLPDELQEIITIVLPGI 644

Query: 663 HENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            + N R  V  +G    +F++D  R  QI   +LSNA  F+ K   +ILK      +   
Sbjct: 645 RKMNQRFDVYLEGPGWENFMSDALRFRQILLNLLSNASKFTPKDGRIILKIEIQETESAK 704

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVS 773
                F+V +NG  +  +  + +F  F         Q  G GLG++I +  I+L GG ++
Sbjct: 705 KAMICFTVSDNGIGMSPEYLEQIFEPFTRERDSRIDQIEGSGLGMAITKRLIDLLGGTIT 764

Query: 774 ISSSDEGVTTINCRIP 789
           + S     T  +  +P
Sbjct: 765 VKSQLGVGTVFDVLMP 780


>gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli HS]
 gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ATCC 8739]
 gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           HS]
 gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           ATCC 8739]
          Length = 949

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|90022761|ref|YP_528588.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952361|gb|ABD82376.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 861

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 12/252 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
               VR    L +KNE L +A + K+ F+ ++S+E+R+P+  +IG  D+     L   + 
Sbjct: 175 CNSIVRLRHRLKQKNEELSEALKAKSEFLANMSHEIRTPMNGVIGMLDVAL---LSETSP 231

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +Y+     S+  LL ++NDILD + V+AG ++L      ++DL++EV  + +    +
Sbjct: 232 EKHRYLSVARNSAQSLLGIINDILDFSKVEAGKLELEAIDTDIDDLVHEVLVNFSGLAEQ 291

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GD 718
           N++ +       +   V  D  R+ QI + ++ NA+ F+  G  V++KA  +        
Sbjct: 292 NDVELIADISPTISHLVKCDPGRIKQILNNLVGNALKFTPHGE-VLVKARAEKLVSGRIQ 350

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V++ G  I     K +F+ F        R   G GLGLSI +       G +S+ S
Sbjct: 351 LHFLVRDTGIGIAAQNQKHLFDSFTQADTSTTRKYGGTGLGLSIAKRLCETMNGAISLES 410

Query: 777 SDEGVTTINCRI 788
            +   +T    I
Sbjct: 411 YEGKGSTFAFFI 422


>gi|75761496|ref|ZP_00741459.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491013|gb|EAO54266.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 895

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 142/313 (45%), Gaps = 28/313 (8%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+ S      A+ + T     +S   E           
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQASGRTTMQAEELRTTNEQLESRTEEAEQKTADLQIT 477

Query: 555 ---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +   
Sbjct: 478 KSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELAT 537

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +
Sbjct: 538 VIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTI 597

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NGD 718
                +   F  D +R+ QI   +LSNA  F+ KGS             + D        
Sbjct: 598 EDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDW 657

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
              SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ S
Sbjct: 658 ITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLES 717

Query: 777 SDEGVTTINCRIP 789
           +    +T    IP
Sbjct: 718 NVGEGSTFTVYIP 730


>gi|67525289|ref|XP_660706.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4]
 gi|40744497|gb|EAA63673.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4]
 gi|259485950|tpe|CBF83405.1| TPA: sensor histidine kinase/response regulator, putative
            (AFU_orthologue; AFUA_3G12550) [Aspergillus nidulans FGSC
            A4]
          Length = 2312

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 123/247 (49%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+  +IG ++LLK +K   L+ +Q +YV
Sbjct: 1840 AEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGTK---LDREQDEYV 1896

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1897 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETI 1956

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---DFIFSVK 724
               D      V   D  RL QIF  +LSN+  F+ KGS TV  K  R+         SV 
Sbjct: 1957 EDLDEVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVSAKVTREGKGRVRLECSVS 2016

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IP++    +F  F            G GLGLSI ++ I  + GG + + S     
Sbjct: 2017 DTGIGIPDEQKPRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSVPGAG 2076

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2077 TTVTFHL 2083


>gi|320334937|ref|YP_004171648.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
 gi|319756226|gb|ADV67983.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
          Length = 1510

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 137/847 (16%), Positives = 286/847 (33%), Gaps = 111/847 (13%)

Query: 13   GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72
            G ++  +    +   G +   L  T +   +  RQR        E  + L+     L + 
Sbjct: 293  GRDVAAVSPWLVLCAGLLVATLSFTTLQGQVRARQRA------EEMNARLAASRANLERA 346

Query: 73   HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLS---- 128
             +          +W    +   +       + +    T   +F           L     
Sbjct: 347  RAEFEA------IWRA-IQDAALFTDASGAVLMSNPATA-QTFGYGEGELAGQNLDVLRA 398

Query: 129  ---------KATEK--LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
                      A     +R +G +F    E Q    +   G + G    +R ++ D + ++
Sbjct: 399  DPRLHDGHFNAVTTQYVRADGAAF--YGEAQRSPVMSDRGELLGQLEVIRDVT-DRVEAD 455

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI---SYKKNTETEGIVFQ 234
             A    + +        ++ + +++  +VW  D  G  ++ N    +Y   +E + I   
Sbjct: 456  RARRESELR--------YRGVLEAMPQMVWVTDPHGHPVYYNHGWFAYTGLSEHDSITLG 507

Query: 235  KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV--RVLNSFGE---- 288
                   +           S+   E    E       G + ++ +    V N  G+    
Sbjct: 508  PLSAAHPQDRARLQDHAERSAQRGEPYELEVRYRRADGAHHTFVVRGNPVRNPRGDIIEW 567

Query: 289  AGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE--ID 342
               A D+      E  +         +L  L   + +   +  + + NR + E     + 
Sbjct: 568  VTTATDIQTRIAAEQDLRTSEQRYRGVLEGLPHLVWLARPDGTVTYANRRWNEYVGPHVP 627

Query: 343  LAFLA--TNPSN-DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
               L   T+P + D  +   R+A         +         Y++        H  +G+ 
Sbjct: 628  PDRLVEYTHPDDRDHFVRRWRAATATGHLFQAEHRLLGADGKYRTFMARAVPIHDVDGRI 687

Query: 400  LHVIVTSNPRGGTIW------MFENLT--------VQVDLETKYNTLVKVQGET------ 439
            +  + TS      ++      +  +L+         +   E    TL     +       
Sbjct: 688  IEYVGTSTDIDDQVYGQRASRLLADLSQTLARVGDERDAFEQVLRTLTTRLADAVTLWHG 747

Query: 440  -IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             +  L + + +   + R  L   +        ++    G      + T   +        
Sbjct: 748  GLGSLPDPLTMVRGELRPDLHMASAEGTMSAVQDAEHTGQLRIYTSPTLEPF-------G 800

Query: 499  LFAAIITSFDDERKSLQGTL-----ELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAE 552
            L +A++       +S  G L         D  L+    +       +        +  A 
Sbjct: 801  LTSAVLMPLGVRGQSASGVLGFGLPYTPDDRDLDLMQEVATRIGTALDNHRQYARAQAAR 860

Query: 553  RALTEKNEALRKA-----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            R L   N+ L              +    +F   VS++LR+PL +I+GF DLL+    G+
Sbjct: 861  RELQHLNQTLEARVESRTAALQDANRELEAFSYSVSHDLRTPLRHIVGFADLLRKD-TGT 919

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+ K ++Y+  I+ ++T +  L++D+L+ + +  G  +L  + + L +L  E +  +   
Sbjct: 920  LSDKSARYLGIITDAATKMSTLIDDLLEFSRM--GRQELRRAPVNLTELAEEARADLQPD 977

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK--GSTVILKAARDNGDF 719
                +++ ++     L +  ADR  + Q+F  +L NA+ +S K   + + ++A +     
Sbjct: 978  AEGRDVQWRLH---DLPTVPADRALMKQVFVNLLGNALKYSGKQAHARIEVRAEQGTDSV 1034

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
               V +NG          +F  F       +  G G+GL+ V   IN HGG V+  S+  
Sbjct: 1035 TVHVSDNGVGFDPAYADRLFGVFQRLHRADEFNGTGIGLANVRRIINRHGGTVNAHSTPG 1094

Query: 780  GVTTINC 786
               T + 
Sbjct: 1095 EGATFSF 1101



 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 153/413 (37%), Gaps = 51/413 (12%)

Query: 390  DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
            +  HL + +  H +V +    GT+     + ++VD E      ++               
Sbjct: 1128 NVLHLEDNELDHELVRATLEDGTLPWDAQI-IRVDDEAGLRDALQTFAP----------- 1175

Query: 450  FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF-- 507
                  I +S+ +  +        L   +H        +    E    D     +T +  
Sbjct: 1176 -----HIVISDYSLPTYDGLSAFELVSASHPHLPFIIVTGAMGEEVAVDTLRRGVTDYVL 1230

Query: 508  --DDER------KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                ER      ++L  T E       E  I  L     M        +  AE+   +  
Sbjct: 1231 KQRLERLVPAVTRALAETAERQRRERAEAEIRALNLTLQMRLEEVERLNRVAEQQRQKLE 1290

Query: 560  EALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            E   + +E   ++ +F+   S+ELR+PLT ++G+   L+     +      Q +   +  
Sbjct: 1291 EQAGQLEEALKLQKTFLAETSHELRTPLTALLGYLRRLEREAGAT------QTLHDAARV 1344

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            +  +  LVND+L L+  +  +  +    + L D++  V +          IR+    D  
Sbjct: 1345 AENMTRLVNDLLQLSRGEL-VQSIEPHFVNLADIVRAVGRDY-------GIRV----DSP 1392

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                VAD  RL Q+F  ++SNA+        V + A     D    V + G  +P+D+  
Sbjct: 1393 DIEVVADPGRLTQVFVNLVSNAIRICGTPDKVRVYAEDHGQDITIDVIDTGPGVPDDVKP 1452

Query: 737  SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F++F      G     GLGL+I +  +  HGG + +  +  G  T    +P
Sbjct: 1453 RIFDKFYRGKEAGS---AGLGLTIAQQVVQAHGGRIEVLDTPGGGATFRVTLP 1502


>gi|258626849|ref|ZP_05721656.1| sensor histidine kinase [Vibrio mimicus VM603]
 gi|258580896|gb|EEW05838.1| sensor histidine kinase [Vibrio mimicus VM603]
          Length = 733

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 131/279 (46%), Gaps = 17/279 (6%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E  II +           +    +    L  +    + + + K++F+  +S+E+R+P+  
Sbjct: 312 EGEIIDIRYKNQDEIRHLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNG 371

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   +L   +   L +KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS   
Sbjct: 372 VLGTAQILLKDE---LTAKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFP 428

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  ++  +K   ++   E  ++ ++ S+      +  D+ RL QI   +LSNA+ F+ +G
Sbjct: 429 LRSIIGSIKSIYSSLCFEKGLQFQLHSEIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQG 488

Query: 706 STVILKAARDN-GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             V +  + +N GD       V+++G  IP+D    +F  F        RR  G GLGL+
Sbjct: 489 -FVSVGLSEENIGDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLA 547

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI------PSKE 792
           IV+    L  G VS+ S     T    R+      P KE
Sbjct: 548 IVKQIAELMSGTVSVQSEVGQGTCFEVRVKLAASEPIKE 586


>gi|75910333|ref|YP_324629.1| periplasmic sensor hybrid histidine kinase [Anabaena variabilis
           ATCC 29413]
 gi|75704058|gb|ABA23734.1| Periplasmic Sensor Hybrid Histidine Kinase [Anabaena variabilis
           ATCC 29413]
          Length = 922

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L     A   A++ K+ F+  +S+ELR+PL  I+G+  +L+ S+  ++     + +  
Sbjct: 439 QELETAKIAADVANQAKSEFLASMSHELRTPLNGILGYAQILERSE--NIAPTVLEGINI 496

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I    + LL L+NDILDL+ ++AG ++L+ +    +  L  V +    +  +  I    +
Sbjct: 497 IHQCGSHLLTLINDILDLSKIEAGKLELHNTDFDFSYFLTGVVEMCRIRALQKGISFHYL 556

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNG 727
            D  L  +  AD +RL QI   +L NA+ F+  G       +L+   +     F V++ G
Sbjct: 557 PDPHLPQAINADEKRLRQIIINLLGNAIKFTETGGVNFTIQVLEVGANFHKIRFQVEDTG 616

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             +  +    +F  F        Q  G GLGL+I      L GG + + S     +    
Sbjct: 617 VGMTPEQLTKIFLPFEQVGDKSKQVEGTGLGLAISCKMAELMGGQIQVDSILGTGSKFWL 676

Query: 787 RI 788
            +
Sbjct: 677 DL 678


>gi|148263562|ref|YP_001230268.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397062|gb|ABQ25695.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
          Length = 679

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 168/378 (44%), Gaps = 9/378 (2%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
              +  +++ E        V     +H SEG+ V    G     N +   +   + +++ 
Sbjct: 305 LREIKEKLEKELAEKA---VYESLFEHASEGLMVLNARGEPVYVNRSALDILGYQRDQML 361

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYSIIPLP 534
             T    +A    +   E+           + +D   K+  G    ++ SV  Y    L 
Sbjct: 362 KMTLTDFLAEESFQVGMENHMNFFLGRNFRNKYDLLFKTKCGEKRCVAVSVSNYR---LE 418

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +LTF++VT+  RA+  L E NE L+  + +K+ F+   + +LR P+  I      L
Sbjct: 419 GNYAILTFMDVTEERRAQHQLAEANERLKGVNHLKSEFIYTATNDLRLPVAVIHSNCSQL 478

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + S   +L   Q ++++    S   L++L+ ++LD +  D+  ++L+     + + + EV
Sbjct: 479 RDSDTNNLTEMQREHLDSAIDSCDRLMDLIEELLDNSNFDSSELELSCEDKNIMESIQEV 538

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +A    ++ +++ V       S   D +++  + + ++ NA+ F+  G  + +  + 
Sbjct: 539 YTVLAPFAWQHGLQMSVEPLQDNISAFFDSKKIQCVLTNLIGNAIKFTPSGGKIGISVSV 598

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            + + + SV + G  IPE+    +FN F    + +   ++G GLGL+I +  ++ H G +
Sbjct: 599 CDEELLVSVTDTGEGIPENYITRIFNEFYHLKSTNSSAKKGSGLGLAICKRIVDAHSGRM 658

Query: 773 SISSSDEGVTTINCRIPS 790
            + S+    +T +  +P 
Sbjct: 659 WVDSTLNHGSTFSFALPL 676


>gi|281204163|gb|EFA78359.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1047

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 157/387 (40%), Gaps = 42/387 (10%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +L+ + + E +   L  +  + +        +   DG I  +N  F ++++ +   +   
Sbjct: 42  DLSEKDEKEQRIRCLFNISSDAL--------IIHKDGVIMDANTTFETMFQVKTESILYK 93

Query: 478 TH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               I        +  + +  ++ +   I S  +    L     +  +S     I  +  
Sbjct: 94  VPSLISEFLPDFEKLTHNNHSFETYG--INSLGENFAVLVKVEHVKHNSDDIDIISVIDT 151

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +             +AE             +E K +F+  VS+E+R+P+  I+   ++++
Sbjct: 152 SAKKKLIEADLALRKAE-----------AINEAKINFLTTVSHEVRTPINGILASVEIIE 200

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN  Q  ++  I  S   LL+L+ DILD + ++AG M+L      +  +L E  
Sbjct: 201 NTV---LNDTQRDFLSCIKDSGCYLLDLITDILDFSKIEAGKMELQKVEFNMITMLEEAM 257

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             + T   E ++ I +  +  +   V  D  R+ Q+    LSNA+ F+ KG  + ++   
Sbjct: 258 NIVYTTAQERDLEILLTVEESVPIVVIGDPYRVKQVLLNFLSNAIKFTPKGHVI-VRVKL 316

Query: 715 DNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
           D  +              F V+++G  I E+   S+F  F+      QR+  G GLGLSI
Sbjct: 317 DKSNPNQDSSSLVDYTVCFEVEDSGIGIKEEQMDSLFTAFLQLDGTSQRKNQGTGLGLSI 376

Query: 761 VESFINLHGGHVSISSSDEGVTTINCR 787
            +    L GG +++ S     +T    
Sbjct: 377 SKRLCQLMGGEITVRSKFGNGSTFAFT 403


>gi|148981902|ref|ZP_01816560.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
 gi|145960703|gb|EDK26045.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
          Length = 937

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++NDILD + ++AG + L          L EV    AT  HE  + + + 
Sbjct: 332 IERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNGDFIFSVKNNG 727
            D K+ +  V D  R+ QI + ++ N++ F+ +G+  + ++      DN +  F V++ G
Sbjct: 392 IDPKVPAGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDNIELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 301]
 gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 301]
          Length = 949

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPCVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|254507686|ref|ZP_05119818.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
 gi|219549383|gb|EED26376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
          Length = 850

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 92/393 (23%), Positives = 161/393 (40%), Gaps = 36/393 (9%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSL 466
            G  I  F  +  + +L   + N   K   +  +     + ++  D G++   NPA    
Sbjct: 330 DGSGIEEFNQIGQRFELSFKRLNEQEKQFADLFNFSLSPITLWSTDDGQLLRYNPAA--- 386

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
               E           +    S +            + T+              +     
Sbjct: 387 ----ERCFKDEVSRERLVEALSHHVKMCAQGATLTGVNTT--------------IGGITY 428

Query: 527 EYSIIPLPNA----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +++ P+ +     Q M    ++T  V AE+      E   ++  ++  F+  +S+ELR+
Sbjct: 429 RWNLSPIISDNATKQIMAQGQDITSFVEAEKQSQAAKEEAEESARVRADFLAKMSHELRT 488

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G + LLK S       +  ++V+ +  S   LL ++NDILD + ++ G   +  
Sbjct: 489 PLNGILGVSQLLKHSLN---EQEALEHVDVLCNSGEHLLAVLNDILDFSKIEQGKFNIET 545

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDF 701
           +   L +L   V++       E  I + + SD +   +  +D+ RL QI   ++SNA+ F
Sbjct: 546 NEFRLIELETTVEKIFMPLCVEKGIELSMRSDIESQMWANSDQVRLNQILFNLVSNAIKF 605

Query: 702 SSKGST-VILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + +G   V L +      F     VK+ G  I E   K++F  F+       R   G GL
Sbjct: 606 THQGQVCVELSSIETEQQFELEIVVKDTGIGIEEPQLKTIFEPFIQAEATTTREYGGSGL 665

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+IV S + L  G +SI S     TT+  RIP
Sbjct: 666 GLAIVHSLVELMNGTISIDSVVGKGTTLVARIP 698


>gi|189500689|ref|YP_001960159.1| histidine kinase [Chlorobium phaeobacteroides BS1]
 gi|189496130|gb|ACE04678.1| histidine kinase [Chlorobium phaeobacteroides BS1]
          Length = 671

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 147/337 (43%), Gaps = 15/337 (4%)

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYY-NESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           R +              +++    S YY  +    +LF  I+   +D ++   G      
Sbjct: 177 REIDDFAATCGHLLFENKDLDDADSDYYSPDHPLNELFKVIVVLRNDLQELQDGDRMRRK 236

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSY 578
           ++ +        N + +    NV +  + ++     L         A++ K+ F+ ++S+
Sbjct: 237 ETEVALKEARKLNDKLVTEKRNVEEKEKIQQGLIENLKNARIEAESANKAKSEFLANISH 296

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL  +IG T+LL  +   +L+  Q  Y + + +S+ +LL L+NDILD + ++AG +
Sbjct: 297 ELRTPLHAVIGMTELLIET---TLDKDQRYYSDTLYSSAQMLLMLINDILDFSRIEAGRI 353

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
             +     L  LL ++   +  K     + +    D  + S +      + Q+   ++ N
Sbjct: 354 DEDKEVFNLRQLLQDIIAIMKEKASCKGLVLASDIDENIPSVISGYPGYIKQVLLNLIQN 413

Query: 698 AMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           A+ F+ +G       ++     +     SV++ G  IPE+    +FN F        R  
Sbjct: 414 AIKFTYRGQVTVTVTVVSETPQDVSLKVSVQDTGIGIPEEQQHLIFNPFTQIDASSTRKE 473

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+IV   I   GG + ++SS+   +T +  +
Sbjct: 474 GGTGLGLAIVRKLIAFMGGEIQVTSSERDGSTFSFTL 510


>gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
 gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
          Length = 949

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|295085256|emb|CBK66779.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 420

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 184/388 (47%), Gaps = 28/388 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN----PAFRSLWKTEENRLSPG 477
           +V  +      +K     + +++    +   D  +  +N                R+   
Sbjct: 29  EVHSKENKENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPVQVGGVTKRVGDL 88

Query: 478 THIRN-IAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLP 534
            H RN IAA     + +     + A+I  +F  +   K+L+ +++LLS+   E ++ P  
Sbjct: 89  LHCRNAIAAGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSED--EMTVTPCD 146

Query: 535 ------------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                           +LT  +VT+    +R LT + E    A+++K++F+ ++S+E+R+
Sbjct: 147 VSVSGTYLNIHGQDYMVLTVYDVTELKNVQRLLTIEKEHSISAEKLKSAFIANMSHEVRT 206

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ L+      S   ++  Y + ++ ++  LL LVNDI DL+ +++G +   Y
Sbjct: 207 PLNAIVGFSGLM---VSASGEEERKMYADILAENNERLLRLVNDIFDLSQIESGTVDFVY 263

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                NDLL E+      K++ + + +   +  +     ++R+R++Q+ S +L NAM F+
Sbjct: 264 KEFDANDLLRELDGIFKAKLNNSPVELICEAHVQPIMMYSERERIIQVLSNLLHNAMKFT 323

Query: 703 SKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           + G  +      +   +  F V + G  IPE+  K +F+RF+      + +G GLGL++ 
Sbjct: 324 ASGE-IRFGCRLEGMEEVYFFVSDTGIGIPEEDQKKIFSRFIKLD--REMQGTGLGLTLS 380

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ I   GG++ + S     +T +  +P
Sbjct: 381 QTIIQNLGGNLELDSKVNRGSTFSFVLP 408


>gi|237798963|ref|ZP_04587424.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806199|ref|ZP_04592903.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021817|gb|EGI01874.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027312|gb|EGI07367.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 917

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLATI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|218442122|ref|YP_002380451.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174850|gb|ACK73583.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 757

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 7/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---SKLGSLNSKQSQY 609
             L       + A   K+ F+ ++S+EL +PLT +IG    L      +      KQ +Y
Sbjct: 365 EELKNTIAVAQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQKKY 424

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I A+   L++L+NDILD +++ +G  +L      L  + + V      +  + +I +
Sbjct: 425 IESIQANGKKLMDLINDILDYSSLTSGNYQLRIREFSLYSVASAVMGDFQEEAQKKSIEL 484

Query: 670 KVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +      +   F AD  R+ QI S +++NA+ F+ +G  V L+  R+     F +++ G
Sbjct: 485 VLDFQVKKEEIKFYADPDRVQQIISHLMNNAIKFTPEGGRVTLRIWREKNQVFFQIEDTG 544

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +D    +F +F       QR   G GLGL++ +  + LH G + + S+    +   
Sbjct: 545 IGITQDQLPLLFEKFQQLESSRQRTHGGTGLGLALTKQLVELHRGTIEVESTPHEGSLFT 604

Query: 786 CRIP 789
            R+P
Sbjct: 605 VRLP 608


>gi|152061169|dbj|BAF73628.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tabaci]
          Length = 905

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 263 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 319

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 320 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 379

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 380 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 439

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 440 GLSSQDVRALFQAFSQADNSPSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 499

Query: 787 RI 788
            +
Sbjct: 500 SL 501


>gi|222095207|ref|YP_002529267.1| sensor histidine kinase rese [Bacillus cereus Q1]
 gi|221239265|gb|ACM11975.1| sensor histidine kinase ResE [Bacillus cereus Q1]
          Length = 580

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 238 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 290

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 291 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 342

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 343 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 391

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 392 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 451

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 452 ALTVDFKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 511

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 512 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 565

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 566 GEGTTFSVYLPNR 578


>gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489]
 gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007]
          Length = 949

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|292493747|ref|YP_003529186.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291582342|gb|ADE16799.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 767

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 118/657 (17%), Positives = 227/657 (34%), Gaps = 66/657 (10%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIV 232
           + +   + ++      +   + D +   V   D  G I + N   ++       E  G  
Sbjct: 1   MTQMNEELREREAQYRLQAQIIDQIHDAVTSIDLKGAITYWNKGAERLSGYSAVEALGKH 60

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------ 286
                 E    F E+   R +      +   E     + G +    +   L         
Sbjct: 61  ISFIYPEEEHTFLEQQVIRPLEEKGHHEV--EVRLRRKSGEDFYAHLALSLLMDQEGAVT 118

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTV--AIAIFD---QNRYLQFHNRSFVELWEI 341
           G  G A+D++      + L  +      L     +A++        LQ++N+  VELW  
Sbjct: 119 GMIGYAMDITMRKQAEEALRESEARYRKLADLLPVAVYTCKAPKGTLQYYNQQAVELWGR 178

Query: 342 DLAFLATNPSN-DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +             L  + R    L    +           Y++ E   +    P+G  +
Sbjct: 179 EPLCNDDEEQLCGPLKLYQRDVATLSHPQSPMAIALTQGISYRNREVIIE---RPDGSRV 235

Query: 401 HVIVTSNPRGG-------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP- 452
             +   +P           I + +++T     E              D    G+ +  P 
Sbjct: 236 IALANIDPIKNREGKVIEIINVLQDITYLKRAEEALRDSEARYRALFDGSPSGILMLNPS 295

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI---ITSFDD 509
           D      N              +    + +I A  S   +         A+      F+ 
Sbjct: 296 DLTFVEFNDQAHLQLGYSREEFAQ-LTLPDIEAATSPEQSLEHACYFVQALGIDKQEFET 354

Query: 510 ERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             ++ +G +   L++   L+       +      F ++T+  RAE+AL        +AD 
Sbjct: 355 HYRTKRGKIHDVLVTGRPLQIQ----GHTYLCAVFQDITERKRAEKALQ-------EADR 403

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +++ELR+PL  I     LLK     SL   Q Q    I      L  LV+D+
Sbjct: 404 RKDEFLALLAHELRNPLVPIRNAVQLLKLQSEPSLPHLQ-QACGLIERQLNHLTRLVDDL 462

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD+A +  G + L  S + +   + +  ++I + + E    + +          AD  RL
Sbjct: 463 LDVARITRGRITLQKSRVDMARCVVQAVEAIRSLLDEKGHDLTLKLPPFPLQVEADPVRL 522

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +L NA  ++ +G  V L   ++    + +V +NG  IP ++   +F+ F  +  
Sbjct: 523 AQVIENLLHNAAKYTHEGGRVTLTLTQEGQQAVLTVTDNGIGIPPELLPHIFDCFAYSER 582

Query: 748 RGQRRGVGLGLS----------IVESFINLHGGHVSISSSD-EGVTTINCRIP-SKE 792
                      S          +  S + +HGG +  +S   +  +T   ++P +KE
Sbjct: 583 PLNHP------SPQGGLGLGLSLARSLLEMHGGQIGATSPGLDQGSTFTVQLPLAKE 633


>gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya zeae Ech1591]
 gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591]
          Length = 955

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 161/367 (43%), Gaps = 30/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     + L+    +R +   
Sbjct: 353 QLEENEQFNRKIVASAPVGICILRISDGTNILSN----ELAHNYLSLLTYEDRVRIVRII 408

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +     D       ++T  +   +         +++V             +   ++V+
Sbjct: 409 CEQQSKSLD-------VVTGRNHHLQISFVHSRYRNENV------------AICVLLDVS 449

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             VR E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL S  
Sbjct: 450 ARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPSDA 506

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ V  +  SS +LL +++DILD + +++  +K+  S     +++N +  +    + +  
Sbjct: 507 NRLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHILNNYLPLVVKKR 566

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    D  + S  + D  RL Q+ S +LSNA+ F+  G  V   A  D G  +F V++
Sbjct: 567 LELYCYIDPNVPSRLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACSDEGYLVFKVRD 626

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  ++L  G ++I S     + 
Sbjct: 627 TGVGIDTRSVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSE 686

Query: 784 INCRIPS 790
              RIP 
Sbjct: 687 FGIRIPL 693


>gi|241762807|ref|ZP_04760871.1| histidine kinase [Acidovorax delafieldii 2AN]
 gi|241368226|gb|EER62418.1| histidine kinase [Acidovorax delafieldii 2AN]
          Length = 844

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 27/265 (10%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EKN+ L++  ++K+ F+ ++S+ELR+PL  IIGF+++LK   +G +  KQ ++V  I 
Sbjct: 308 LAEKNQQLQEVSQLKSDFLANMSHELRTPLNAIIGFSEVLKDGLVGEITPKQHEFVSDIF 367

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   LL+L+NDILDL+ ++AG M L+  T  ++ +L      +  K   + I ++    
Sbjct: 368 ASGQHLLSLINDILDLSKIEAGKMTLDLDTQDVDAMLRNSLSIVKEKASAHAILLQFDVA 427

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------------------ 716
             LG  + D ++  QI   +LSNA+ FS+    V L+A +                    
Sbjct: 428 EPLGMALLDARKTKQIVFNLLSNAVKFSANNGKVTLQARKVQRAAIETWATQQPTSLRMP 487

Query: 717 -------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                       +V + G  I       +F  F        R   G GLGL++V   + L
Sbjct: 488 LPPSAFADFLEIAVVDTGLGISAADVPRLFQAFSQLDSSLSRVSEGTGLGLALVLKLVQL 547

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           HGG V+++S+    +T    +P ++
Sbjct: 548 HGGTVALASTPGHGSTFTVWLPWRK 572


>gi|42780676|ref|NP_977923.1| sensor histidine kinase ResE [Bacillus cereus ATCC 10987]
 gi|42736596|gb|AAS40531.1| sensor histidine kinase ResE [Bacillus cereus ATCC 10987]
          Length = 591

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|320194695|gb|EFW69325.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           WV_060327]
          Length = 778

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IPED    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------VRVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 933

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 247/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L+   D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLQVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGIGSQFTVRIPL 674


>gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1205

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+ ++S+E+R+P+  IIG + L   +    L+  Q  Y++ +  S+  LL L+N
Sbjct: 478 NKAKSDFLANMSHEIRTPMNAIIGMSYLALKT---DLSKAQRNYIQKVKLSADSLLGLIN 534

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           DILD + ++AG + +      L ++L+ +   +  +  E  + + +  D  + +  V D 
Sbjct: 535 DILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTALVGDP 594

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFN 740
            RL QI   + +NA+ F+ +G   V +   + +G+     FSV ++G  +  + C  +FN
Sbjct: 595 LRLGQILINLANNAVKFTEQGEIKVSIALEKKDGNDITLKFSVTDSGIGMTPEQCNKLFN 654

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +F        R   G GLGL+I +    L GG + ++S     +T +  
Sbjct: 655 KFTQADSSTTRKYGGTGLGLAISKELCQLMGGDIGVTSEQGKGSTFSFT 703


>gi|327541975|gb|EGF28476.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1150

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 113/792 (14%), Positives = 247/792 (31%), Gaps = 97/792 (12%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPE--------------- 94
           ++A  +    +    I ++     ++         V        +               
Sbjct: 252 AVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGTLTQMNAAGLKMIEANPTA 311

Query: 95  -IIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR---KEGQSFDLVAETQND 150
            + G     +  P+       F   +   H   L      LR   +  ++  +     N 
Sbjct: 312 NVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDIIGLRGSRRHMETHAVPLSLTNG 371

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
             +++                  +  ++ E       L  +   F+ L  +   +V+  +
Sbjct: 372 ETVQL-----------------AVTRDITERKRSEATLRENERRFRALTQATSDIVFRMN 414

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS---SSALEKNFCE--T 265
                 W+ +   +         + +       F  + +  +     +S  +++F E   
Sbjct: 415 AD----WSEMGMLEGRAFIDSTTEPSRSWLDHYFHPDDQTEVRKVVQNSVEKQSFYELEH 470

Query: 266 VSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEIL----HNL 315
                 G       + V +L+  G      G   DV++     +      + L       
Sbjct: 471 RVIRIDGTLGWMHSRAVPILDDAGNVVEWFGAGTDVTERKQSEEFQHRATQTLLTVIEQS 530

Query: 316 TVAIAIFDQNRYLQFHN----RSFVELWE-IDLAFLATNPSN------DELLEFLRSANK 364
            + I + D +  +   +     +F  +   I   F     +        E +   R   K
Sbjct: 531 PLGIYLVDGDFKIAQVSLGAEPAFQNVQPVIGRDFEEVMHTIWPPEFASEAVRIFRHTLK 590

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
             E        E    +    ET    W       ++ I  ++   G +  F + T    
Sbjct: 591 TGEPYVSPGLTEKRKDL---GETESYEWQ------VNRITLADGSYGVVCYFFDTTRLQQ 641

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                           D++S+        G     N  +             G     + 
Sbjct: 642 AADALRESEVRFRMLADNMSQLAWTCCDLGECNWYNQRWYEYT---------GCTFEEMQ 692

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD----SVLEYSIIPLPNAQTML 540
               R  +  D  D     I       +  + T  L              +P+ + +  +
Sbjct: 693 GWGWRQVHHPDHVDRVVERIQRAATAGEVWEDTFPLKGRDGQYRWFLSRAVPIRDEEGTI 752

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                T++   E  L E  + L  AD  K+ F+  +++ELR+PL  I    DLL      
Sbjct: 753 VRWFGTNTDVNE--LRETQQLLHDADRRKDEFLAMLAHELRNPLAPIRSGLDLLA----I 806

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + + +    V  +    T ++ LV+D+LD++ +  G ++L    I     + +   ++  
Sbjct: 807 ADDDEHRDVVRVMQEQVTHVVRLVDDLLDVSRIMRGKVELRKERIEFQSTVRKAIDAVRD 866

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +  +   + +    K     AD  R++Q+   +LSNA  +      + L A   N    
Sbjct: 867 VIESHGHLLTITLPEKTVWLEADPVRIVQVLENLLSNATKYMDGSGAIELSAHVKNESLF 926

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +K+ G  I ++   ++F  F  +       + G+G+GL++V+  + +HGG++   S  
Sbjct: 927 IQIKDEGIGIDQEFLPNIFELFAQSDRSLDRSKGGLGIGLTLVKQLLEMHGGNIHAESDG 986

Query: 779 -EGVTTINCRIP 789
               ++ +  +P
Sbjct: 987 LGKGSSFHIELP 998



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 71/573 (12%), Positives = 163/573 (28%), Gaps = 72/573 (12%)

Query: 47  QRNSLAKKVNETYSFLSE-ICDQLSKYHSLLTENNCLTIVWDGKDETP-------EIIGQ 98
            R     +     +  ++ +  Q S+    L  +  + + WD   +T        EI G 
Sbjct: 119 ARVDSIIRRARVKNESADMLQRQKSRLQMALLASRMVAVEWDISADTVLYSENAIEIFGI 178

Query: 99  LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLV---AETQNDCAIKI 155
                         L     +       + K      +  + F          N   + I
Sbjct: 179 KLLSDHATGPTARKL-----VHPDDIDTVEKTIRNTLQGSREFQTQFRIIRPDNGEIVWI 233

Query: 156 EGR-VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
           E R    + A  +   L  +  ++       + +       + +FD+    +      G 
Sbjct: 234 EERGYVATDASGKPTKLIAVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGT 293

Query: 215 ILWANISYKKNTET---EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
           +   N +  K  E      +            F +  ++      +      E       
Sbjct: 294 LTQMNAAGLKMIEANPTANVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDIIGLR 353

Query: 272 GNNKSYKIVRVLNSFG-----EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
           G+ +  +   V  S       +  +  D+++       L         LT A      + 
Sbjct: 354 GSRRHMETHAVPLSLTNGETVQLAVTRDITERKRSEATLRENERRFRALTQA-----TSD 408

Query: 327 YLQFHNRSFVELWEID-LAFLAT--NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
            +   N  + E+  ++  AF+ +   PS   L  +    ++   +   +   E      +
Sbjct: 409 IVFRMNADWSEMGMLEGRAFIDSTTEPSRSWLDHYFHPDDQTEVRKVVQNSVEK-----Q 463

Query: 384 SSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQ 436
           S    +      +G    +   + P     G  +  F    ++T +   E   +   +  
Sbjct: 464 SFYELEHRVIRIDGTLGWMHSRAVPILDDAGNVVEWFGAGTDVTERKQSEEFQHRATQTL 523

Query: 437 GETIDHLSEGVAVFGPDGRI----KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
              I+    G+ +   D +I      + PAF+++          G     +  T      
Sbjct: 524 LTVIEQSPLGIYLVDGDFKIAQVSLGAEPAFQNVQPV------IGRDFEEVMHTIWPPEF 577

Query: 493 ESDGWDLFAAIITSFDD-------ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            S+   +F   + + +        E++   G  E     V   ++       +       
Sbjct: 578 ASEAVRIFRHTLKTGEPYVSPGLTEKRKDLGETESYEWQVNRITLA----DGSYGVVCYF 633

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQ-HVS 577
            D+ R ++A     E      E++   +  ++S
Sbjct: 634 FDTTRLQQAADALRE-----SEVRFRMLADNMS 661



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 83/250 (33%), Gaps = 34/250 (13%)

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP---NGQTLHVIVT---SNPRGG---- 411
           A KL    +  T ++ I +  + S   +  + +    NG+ + +      +    G    
Sbjct: 190 ARKLVHPDDIDTVEKTIRNTLQGSREFQTQFRIIRPDNGEIVWIEERGYVATDASGKPTK 249

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I +  ++T + + E              D   E + V   DG +   N A   + +   
Sbjct: 250 LIAVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGTLTQMNAAGLKMIEANP 309

Query: 472 NRLSPGTHIRNIAA----TCSRYYNE---SDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
                G  +  + A     C R +NE   S    +    I      R+ ++     LS  
Sbjct: 310 TANVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDIIGLRGSRRHMETHAVPLS-- 367

Query: 525 VLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                   L N +T+      ++T+  R+E  L E     R   +  +  V  ++ +   
Sbjct: 368 --------LTNGETVQLAVTRDITERKRSEATLRENERRFRALTQATSDIVFRMNADW-- 417

Query: 583 PLTNIIGFTD 592
              + +G  +
Sbjct: 418 ---SEMGMLE 424


>gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1]
 gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1]
          Length = 949

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 32/376 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPG 477
           +  +VD   +     +   + +     G+ +    DG   LSN     L     N L+  
Sbjct: 343 IPAEVDA-QRLEEHEQFNRKIVASAPVGICILRTLDGTNILSN----ELAHNYLNMLTHE 397

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              R     C +  N       F  ++TS +    +LQ +           +I       
Sbjct: 398 DRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI------- 440

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL T 
Sbjct: 441 --CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLHTK 498

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L     + V  +S SS++LL +++DILD + +++  +K+        ++++ +  +
Sbjct: 499 E---LPKGVDRLVTAMSNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITAN 555

Query: 658 IATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    + +    D       V D  RL Q+ S +LSNA+ F+  G  +IL   +D+
Sbjct: 556 YLPLVVRKQLGLYCFIDPDVPPQMVGDPMRLQQVISNLLSNAIKFTDMG-CIILHLRQDS 614

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
                SV++ G  IP      +F+ F       +   +G GLGL+I E  IN+  G +++
Sbjct: 615 DYLSISVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIAV 674

Query: 775 SSSDEGVTTINCRIPS 790
            S     +    RIP 
Sbjct: 675 DSEPGMGSQFTIRIPL 690


>gi|224539091|ref|ZP_03679630.1| hypothetical protein BACCELL_03991 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519295|gb|EEF88400.1| hypothetical protein BACCELL_03991 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 642

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 104/492 (21%), Positives = 214/492 (43%), Gaps = 40/492 (8%)

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN--WK 372
           + + + ++D++ YL++ N + ++++ + +  +      D+          L + LN  ++
Sbjct: 13  IPLGLGVYDKDGYLKYANGTTLKMFGVTMKDIYNINIFDDPNITAEDKALLKQGLNVSFE 72

Query: 373 TWKE-NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETK 428
           T  + ++   +  +       +        V +  +P G   G +   E++TV+   E +
Sbjct: 73  TDYDFDLCENFYETPIKGIKKYF----VTKVTIMRDPEGNRQGYLLACEDITVKKAQERE 128

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                K    T   LS  +      G++   N   +              HI NI     
Sbjct: 129 IIESYKKIKATQKELSLAL----NAGKLSSWNYNIKE-----GLFCKFDVHIENIEKRSL 179

Query: 489 RYYNESDGWDL---FAAIITSFDDERKSLQGTLELL---------SDSVLEYSIIPLPNA 536
           +   ES   D    F A++ +   ++K  +  + L          S S   YS +     
Sbjct: 180 QSIYESIHPDDRNKFMALLEAVAHKQKLPENRIILRVLENNATDYSYSSFTYSAVEDEAG 239

Query: 537 QTM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             +       ++T+ +  ++ L        +AD++K++F+ ++S+E+R+PL  I+GF++L
Sbjct: 240 NVVVITFIQRDITEDIIYQQNLITAKNKAEEADKLKSTFLANMSHEIRTPLNAIVGFSEL 299

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  +       ++ +Y + I  +S ILL L+ DILDL+ ++ G + +N   + L  L +E
Sbjct: 300 LTETDDA---EEKFEYKQLIETNSEILLKLIGDILDLSKIEVGSIDINRQKLNLCQLCDE 356

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + +S   ++    + +K+I+         D+ R +QIF+   +NA+ ++ +G  +++   
Sbjct: 357 LYRSFQQRIKNPKVTLKLINPYTKCVANFDKYRFMQIFTNFATNAIKYTPQGE-IVMGYE 415

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              G     VK++G  IPE+    +F+RF       Q  G GLGLSI ++  +  GG V 
Sbjct: 416 CMPGQVRIYVKDSGIGIPEEKKNRIFSRFEKLDTFAQ--GTGLGLSICKAIADATGGEVG 473

Query: 774 ISSSDEGVTTIN 785
             S     +   
Sbjct: 474 FKSKANIGSEFW 485


>gi|183219846|ref|YP_001837842.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189909977|ref|YP_001961532.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774653|gb|ABZ92954.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778268|gb|ABZ96566.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 710

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 167/396 (42%), Gaps = 26/396 (6%)

Query: 417 ENLTVQVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           E +T   ++  K   L+   +    T+  + + V      G I   NP   SL       
Sbjct: 165 EVITRAKEVIEKNEALLNSEQNLSITLSSIGDAVLATDEHGIINRLNPVAESLIGWTAKE 224

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--II 531
            + G ++  +               +F  +I++   +  S  G L       +  S    
Sbjct: 225 -AIGKNVNEVLQLVYASSGLPKSIPIFE-VISNGTVKGSSQDGILIHRYGRKINISDTCS 282

Query: 532 PLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           P+ N       ++L F ++++   A+  L +  E    A++ K+SF+  +S+E+R+PL+ 
Sbjct: 283 PIRNKNGEIIGSILVFRDISEEFAAKTYLEKAKENAEMANKAKDSFLATMSHEIRTPLSG 342

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +IG  +LL  +   SLN  Q   V     S   LL +++DILDL+ ++ G ++L+     
Sbjct: 343 LIGMLELLYQT---SLNDDQKSLVNNALVSGNSLLRILSDILDLSKIEEGKLELSLQPTS 399

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
           ++ LL+EV  +         + +    D K+ S  + D  RL QI +  +SN + F+SKG
Sbjct: 400 ISRLLSEVATTYLQIASSKGLTLSYAVDEKITSAHILDSLRLSQIINNFVSNGIKFTSKG 459

Query: 706 STVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
           S + + A             FSV + G  + +     +F  +            G GLGL
Sbjct: 460 S-IHISANLIKNIDTLQQIQFSVTDTGIGLSKTDQSKLFQSYTQATADTARLYGGTGLGL 518

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR--IPSKE 792
           +I      L  G+++I S     +T +    +P+ E
Sbjct: 519 AICMRLSELMDGNITIDSLPGSGSTFSITLSLPTTE 554


>gi|54301740|ref|YP_131733.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum SS9]
 gi|46915160|emb|CAG21933.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum SS9]
          Length = 971

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 118/245 (48%), Gaps = 13/245 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  E    AD  K++F+ ++S+E+R+P+  ++G + LL  +    L  +Q  ++  
Sbjct: 390 QRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKT---DLTQEQRHHLLT 446

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   +++++NDILD + ++ G  KLN +   + DL+  ++ +  +   E  +   + 
Sbjct: 447 LLDSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKGLDFSIQ 506

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKN 725
                   F AD+ R+ QI   +++NA+ F+ KG  V +   +           I + ++
Sbjct: 507 CHFDSNSWFFADKSRIRQILFNVINNAIKFTDKGE-VRVSLNQGQCDNPKERKLIITAQD 565

Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I ED  + +F+ F     +   +  G GLGLSIV    NL  G + + S+    +T
Sbjct: 566 TGIGIAEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVRQLANLMNGDIQLESAYGKGST 625

Query: 784 INCRI 788
               +
Sbjct: 626 FTITL 630


>gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
 gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
          Length = 1197

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 116/246 (47%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L    +    A+  K+ F+ ++S+E+R+P+  IIG + L   +    L   Q  Y
Sbjct: 462 RFAAKLAVARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKT---DLTKAQRNY 518

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  LL L+NDILD + ++AG + +      L ++L+ +   +  +  E  + +
Sbjct: 519 IHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFHLENVLDNISNLVGLRASERGLEL 578

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVK 724
            +  D  +  + V D  RL QI   + +NA+ F+ KG   + ++    NGD     FSV+
Sbjct: 579 LIHIDRDVPTTLVGDPLRLGQILINLANNAVKFTEKGEIKISIRVVERNGDDLVLQFSVE 638

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  +  +    +F++F        R   G GLGL+I +    L GG + + S     +
Sbjct: 639 DSGIGMTPEQTAKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIEVQSEAGKGS 698

Query: 783 TINCRI 788
             +  I
Sbjct: 699 CFSFSI 704


>gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira
           platensis NIES-39]
          Length = 730

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 121/235 (51%), Gaps = 13/235 (5%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K+ F+  +S+E+R+P++ ++G  +LL  +    L  +Q  Y + I  S+  LL ++N+
Sbjct: 62  QFKSRFLAQMSHEIRTPMSGVLGMVELLMQTH---LTPQQKDYTQTIYRSAKHLLTVINE 118

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           ILDL+ ++AG   L      L D L  V   ++ K  +  + + ++ +  +  ++  D  
Sbjct: 119 ILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILLEPNIPRYLKGDGM 178

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           RL Q+   +++NA+ F+  G  +I    R    D  +  FS+++ G  I +++   +F  
Sbjct: 179 RLQQVLINLVNNAIKFTQSGHIIIRLTPRFINQDQINIYFSIEDTGLGISDELQPQLFQP 238

Query: 742 F--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR---IPSK 791
           F   S+A   Q  G GLGLSI +  +NL GG + ++S +   +        +PS+
Sbjct: 239 FSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVNSQEGDGSIFWFTANFLPSE 293


>gi|225568537|ref|ZP_03777562.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053]
 gi|225162765|gb|EEG75384.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053]
          Length = 1410

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/268 (29%), Positives = 139/268 (51%), Gaps = 14/268 (5%)

Query: 533  LPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + ++   L   +VTD + AER    AL        +A+  K+ F+  +S+++R+P+  II
Sbjct: 987  INHSTVCLVQADVTDMLAAERKNKKALENALVLAEEANRAKSDFLSTMSHDIRTPMNAII 1046

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            G T  L  + LG  + + +  +  IS SS  LL+L+NDILD++ +++  + LN   I L 
Sbjct: 1047 GMT-TLAVAHLGD-SGRVADCLNKISISSRHLLSLINDILDMSKIESAQISLNRMEIYLP 1104

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            D+L ++   IA +  E  IR  + ++G +   F  D  R+ QI   ILSNA+ ++ +G +
Sbjct: 1105 DMLEKLSAIIAPQAGEAGIRFDIRTEGIRHNYFYGDALRIDQILINILSNAVKYTREGGS 1164

Query: 708  VILKAARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            V+  A             + F+V + G  + E+  + +F+ F  +A   +  G GLGLSI
Sbjct: 1165 VMFAAEEIPSVRQAGWLRYRFTVSDTGIGMTEEFLEHIFDPFARSAGTQRIEGTGLGLSI 1224

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRI 788
             +  ++L GG +S+ S+    +     +
Sbjct: 1225 TKGLVDLMGGEISVQSTPGEGSCFQVEL 1252



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 103/337 (30%), Gaps = 56/337 (16%)

Query: 127 LSKATEKLRKEGQSFDLVAETQ--NDCAIKIE--GRVSGSCA-FLRILSLDGIYSELAET 181
           L  A   L   G+  D+    +  +   I +   GR  G  A  +R  ++          
Sbjct: 312 LEAAASALIS-GEVLDVSYRMRHKDGNLIWVHLNGRRMGPLAEVMRFYAV---------- 360

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANISYKKNTETEGIVFQKAIGES 240
                 +S    +F+ + +     ++   +   ++L+ N + K     +     +   E+
Sbjct: 361 ---FTGMSAETRIFQEMANETADGIYVISKETYELLYVNEA-KDLFAGKNDCIGQKCYEA 416

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN---KSYKIVRVLNSFGEAGIAIDVSK 297
             L   E      +    E +  E    +          ++               D ++
Sbjct: 417 --LHGREKACEFCTLGKYEPDGEEHDMAVPGSGRYYSTRFRETDWNGIPAYVKFVRDTTE 474

Query: 298 EITVNDQLTHTYE----ILHNLTVAIAI--FDQNRYLQ--FHNRSFVELWEIDLAFLATN 349
           E+    +     +    +L NL   + +  ++++  +   F +  F  +  +        
Sbjct: 475 EVRTRKEKERLEQYFQTVLSNLPGGVVVVHYEKDGSMTPEFLSDGFAAMTGM-------- 526

Query: 350 PSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKD-TWHLPNGQ-------TL 400
            + DE  +  R          +    KE +     S  +  +  + L  G        TL
Sbjct: 527 -TTDEAWQLYREDAMAGIHPDDCAYVKEQMNEYIASGASSWEIIYRLKKGSGYVWVKNTL 585

Query: 401 HVIVTSNPRGGTIWMFENLT----VQVDLETKYNTLV 433
            +I           +++++T     Q  +  +Y  ++
Sbjct: 586 SLIENEGGERRIYTVYQDMTKILKEQEQMRRQYQEML 622


>gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 110-3]
          Length = 933

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 IEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|156976578|ref|YP_001447484.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|1708886|sp|P54302|LUXQ_VIBHA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|459205|gb|AAA20838.1| LuxQ [Vibrio harveyi]
 gi|156528172|gb|ABU73257.1| hypothetical protein VIBHAR_05352 [Vibrio harveyi ATCC BAA-1116]
          Length = 859

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 152/394 (38%), Gaps = 24/394 (6%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F+++   ++    +     K   +  +     + V+  +  +   NPA R   
Sbjct: 332 GGSDIEEFDHIGSTLESTFEELEAQKKSFRDLFNFALSPIMVWSEESVLIQMNPAARKEL 391

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             E++        +      + +   +        +     ++      +   +   +  
Sbjct: 392 VIEDDHEIMHPVFQGFKEKLTPHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDI-- 449

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                   +  ++   ++T  + AE+          K+ + +  F+  +S+E+R+P+  I
Sbjct: 450 --------SGIIVQGQDITTLIEAEKQSNIARREAEKSAQARADFLAKMSHEIRTPINGI 501

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LLK S       +Q   ++ +  S   LL ++NDILD + ++ G   +       
Sbjct: 502 LGVAQLLKDSVD---TQEQKNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSF 558

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            D +  ++           + + + ++         D+ RL QI   ++SNA+ F+  GS
Sbjct: 559 TDTMRTLENIYRPICTNKGVELVIENELDPNVEIFTDQVRLNQILFNLVSNAVKFTPIGS 618

Query: 707 TVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
            + L A        +N   +  + + G  I  D    +F  FV       R   G GLGL
Sbjct: 619 -IRLHAELEQFYGAENSVLVVELTDTGIGIESDKLDQMFEPFVQEESTTTREYGGSGLGL 677

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +IV++ +++  G V + SS  G TT    +P K+
Sbjct: 678 TIVKNLVDMLEGDVQVRSSKGGGTTFVITLPVKD 711


>gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327]
          Length = 949

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1846

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 113/707 (15%), Positives = 235/707 (33%), Gaps = 104/707 (14%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
               +       A      ++L   +S      +++  L +  D  G I  AN ++ + + 
Sbjct: 724  FSDVTDEKRSEAALRESQERLQKALS-----IETVGVLFFMLD--GQITDANDTFLRMSG 776

Query: 228  TEGIVFQKAIGE---SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
                  +        +   F +         + L K        +    ++ + +     
Sbjct: 777  YNRDEARHIAHWKDLTPPEFWDVTSAAAEELATLGKTAPYEKQHIRKDGSRWWGLFSPTR 836

Query: 285  SFGE------AGIAIDVSKEITVNDQLTHTYE---ILHNLTVAI-AIFDQNRYLQFHNRS 334
              G           ID+S      + L  + E    L  L+ AI  + D    +   + +
Sbjct: 837  LKGSGRNAECVEFVIDISDRKRAEETLRESKERQAFLLQLSDAIRPLTDPVEIMATVSET 896

Query: 335  FVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK-----ENIFSVYKSSETH 388
                +++    +   +P  D L+   R       Q     W      +++   Y+S +T 
Sbjct: 897  VRHYYKVARCGYSEVSPPYDHLV-VARDCTNGIMQNLQGAWPLVSFGDDLIRQYRSGQTV 955

Query: 389  KDTWHLPNGQT--------------------------------LHVIVTSNPRGGTIWMF 416
                   + ++                                +   V  +  G  + + 
Sbjct: 956  VVEDAFEDARSKGKEADLESAGNIRSSISVQLIKQGNWVASFYVQDTVRRSWTGNEVNLM 1015

Query: 417  ENLTVQ-------VDLETKYNTLVKVQGETIDHLSEGVAV----FGPDG-----RIKLSN 460
            E +  +          E       +      + +++G A+    +  D      R    +
Sbjct: 1016 EEIAERTWSALERARTEAALRESEEKYRSLFESINDGFALLEVLYDDDDKPLDCRFLEVS 1075

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            P+F +     + +   G  +R +  +    + E     L    +  F+  +  L      
Sbjct: 1076 PSFETQTGLTQVQ---GKTLRELIPSVESGWFEHYHQALVTNALVHFEMWQDYL------ 1126

Query: 521  LSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAER-----------ALTEKNEALRK 564
               +  E  + P  N Q      +   +N      AER              ++ E L +
Sbjct: 1127 --KTWFEVDVFPYGNPQDRKVTIVFQNINEHKQAEAERLQLIQEQAAREQERQRAETLAE 1184

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
             D +K  F  +VS+E R+PLT  +     + +     L+  Q + +E +  ++  LL LV
Sbjct: 1185 LDRVKTLFFSNVSHEFRTPLTLSLAPLQDILSDPTHPLDPVQGERLELVHRNNLRLLKLV 1244

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            N +LD + ++AG ++  Y    L     E+     + +   ++++ V           DR
Sbjct: 1245 NTLLDFSRIEAGRIEAVYEPTDLAMFTTELTSVFRSAIERADLQLIVDCPPLPEPVFVDR 1304

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            Q   +I   +LSNA  F+ KG   +  A  ++   I  +++ G+ I  +    +F RF  
Sbjct: 1305 QMWEKIVLNLLSNAFKFTFKGEIRVSLANNNDNCAILQIQDTGTGIAPEHLPHLFERFYQ 1364

Query: 745  NAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                      G G+GL++V   + LH G + ++S+    T     +P
Sbjct: 1365 VRGIQARTHEGSGIGLALVYELVRLHSGSIEVNSTLGEGTCFTISLP 1411



 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 119/296 (40%), Gaps = 20/296 (6%)

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIK 569
            R   +  ++ L     +Y I P    + +          +    AL  +          K
Sbjct: 1556 RAGEESIIKGLEAGADDYLIKPFSAQELVSRVNAHLQMAKLRGEALDHER----MISRRK 1611

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +  +  VS+EL +PL  I+G+T LL+ +         ++ +E I  ++ +   L+ D+LD
Sbjct: 1612 DELLSTVSHELNTPLVAILGWTRLLRGTP--PSQPMLTKALETIERNAALQAKLIQDLLD 1669

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-----ISDGKLGSFVADR 684
            ++ ++A  + L+   + +  L++    ++A       I +         D        D 
Sbjct: 1670 ISRINADKLLLSLEPVEIGSLIDIAISTVAPLASTKGIDLIWHKTNEDGDASSVVVKGDP 1729

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKS 737
            +RL+Q+   +L+NA+ F+     V ++ +        D G    SV + G  I  +    
Sbjct: 1730 ERLVQVMGNLLTNAIKFTPPSGRVSVELSVMRDDNFADGGYAKISVIDTGIGIAAEFLPY 1789

Query: 738  VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
            VF RF         +G+GLGL+I    I LH G + + S       T    +P  +
Sbjct: 1790 VFERFRQGEGTNGVKGLGLGLAISRHLIQLHQGSIYVQSQGIGKGATFVIELPINQ 1845



 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 111/304 (36%), Gaps = 41/304 (13%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E  + +       + +++     IF+       +N +      ID  ++ TN      L
Sbjct: 607 AEQALRESEAKYRSLFNSIDEGFCIFE-----MLYNDAGEA---IDFRYIETN------L 652

Query: 357 EFLRSANKLPEQ---------LNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHVIV-- 404
            F R + + P+               W ++   V ++ +  +   +H    +   V V  
Sbjct: 653 GFERQSGRRPQPGQTMQELFPEAEDMWLKDYAEVARTGQPKRFIDFHEDLDRWFDVFVFP 712

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           TSN +     +F ++T +   E       +   + +   + GV  F  DG+I  +N  F 
Sbjct: 713 TSNNKNQLAALFSDVTDEKRSEAALRESQERLQKALSIETVGVLFFMLDGQITDANDTFL 772

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELL 521
            +     +      H +++          +   +L     T+  ++   RK       L 
Sbjct: 773 RMSGYNRDEARHIAHWKDLTPPEFWDVTSAAAEELATLGKTAPYEKQHIRKDGSRWWGLF 832

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S + L+ S     NA+ +   ++++D  RAE  L E  E        + +F+  +S  +R
Sbjct: 833 SPTRLKGSG---RNAECVEFVIDISDRKRAEETLRESKE--------RQAFLLQLSDAIR 881

Query: 582 SPLT 585
            PLT
Sbjct: 882 -PLT 884



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 93/303 (30%), Gaps = 36/303 (11%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD-----FLVWHRDQ----AGDILWA 218
           I  +        E     + L    + ++ LF+S+D     F + + D         +  
Sbjct: 591 IREVTNRTFPRLERAYAEQALRESEAKYRSLFNSIDEGFCIFEMLYNDAGEAIDFRYIET 650

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN-NKSY 277
           N+ +++ +       Q      ++LF E     +   + + +          H + ++ +
Sbjct: 651 NLGFERQSGRRPQPGQTM----QELFPEAEDMWLKDYAEVARTGQPKRFIDFHEDLDRWF 706

Query: 278 KIVRVLNSF---GEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQF 330
            +     S      A +  DV+ E      L  + E L       TV +  F  +  +  
Sbjct: 707 DVFVFPTSNNKNQLAALFSDVTDEKRSEAALRESQERLQKALSIETVGVLFFMLDGQITD 766

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N +F+ +   +           +L          PE  +  +      +    +  ++ 
Sbjct: 767 ANDTFLRMSGYNRDEARHIAHWKDLTP--------PEFWDVTSAAAEELATLGKTAPYEK 818

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFE------NLTVQVDLETKYNTLVKVQGETIDHLS 444
                +G     + +     G+    E      +++ +   E       + Q   +  LS
Sbjct: 819 QHIRKDGSRWWGLFSPTRLKGSGRNAECVEFVIDISDRKRAEETLRESKERQAFLL-QLS 877

Query: 445 EGV 447
           + +
Sbjct: 878 DAI 880



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 102/343 (29%), Gaps = 37/343 (10%)

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI-AIDVSKEITVNDQL 305
            I +R++     +++   T+  +     + + +  V      A   A  +  +     +L
Sbjct: 135 PIVERLVLPLVADRHVFGTIWIISQDEPRHFDLEDVRVMTSLADFTATALLLQQRQKREL 194

Query: 306 ----------THTYEILHNLTVAIA-IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                       +  ++ NL    A + DQN          +E           +   + 
Sbjct: 195 LVANAALEAEARSRALISNLPGGAAFVVDQNLRYMLAEGEALETAGFKPEDFVGHTIFEV 254

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L   L ++    E +  +      F    SS    D  ++  G  +     +    G + 
Sbjct: 255 LSSELVASY---EPMYRQALAGKPFEYEHSS---HDRTYISRGTPIR--AENGEIYGALA 306

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPDGR-----IKLSNPAFRS 465
           +  ++T +   E       +        + E  AV       +G+         NPAF  
Sbjct: 307 VSYDITERKRTEATLRENEEKYRALFVSMDEAYAVVEVLADDNGQWNDFLFLEVNPAFVK 366

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
               E      G     +  T +  + +  G          F++   +L    +L     
Sbjct: 367 QTGMEYP---VGRKATELLGTPNPKWAQVYGRVAETGEPIRFEESEATLNRVFDLYV--- 420

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             + + P  + +  + F +++D  R E       E  +    +
Sbjct: 421 --FRLGPDGSRRVAVLFTDISDHKRREANAAFLAEIAQDFSRL 461


>gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
 gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042]
 gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
          Length = 949

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|262042771|ref|ZP_06015924.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039838|gb|EEW40956.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 755

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 23/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K     ++Q           +D   + V     D      N A   L    E 
Sbjct: 110 EQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 169

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 170 QLIHLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 224

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 225 YYDRVGKRRGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 282

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++   L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 283 ILLDTE---LTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLA 339

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++
Sbjct: 340 DLENLSGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVR 399

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD + F V+++G  IPE     +F  +         +   G G+GL++       
Sbjct: 400 VRYDEGDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARN 459

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG +S++S      T    
Sbjct: 460 MGGDISVTSQPGKGATFTLT 479



 Score = 44.9 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 17/152 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +L+ +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T  
Sbjct: 107 TTLEQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGK 166

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI-- 279
                Q    + + ++ EE  ++++ +   EK F   VS           G    ++I  
Sbjct: 167 S--EKQLIHLKPQDVYSEEAAEKVLETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRK 222

Query: 280 ----VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
                RV    G  G   D+++     D L  
Sbjct: 223 VPYYDRVGKRRGLMGFGRDITERKRYQDALER 254


>gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sonnei Ss046]
 gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185]
 gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088]
 gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
 gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088]
 gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185]
 gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RcsD [Escherichia coli W]
 gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B]
 gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010]
 gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G]
 gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357]
 gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           KO11]
 gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120]
 gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167]
 gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
          Length = 949

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|295699600|ref|YP_003607493.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295438813|gb|ADG17982.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 1193

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +RA+  L    E L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q
Sbjct: 473 DLLRAQNDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRSGNLTDEQ 532

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ +   L  + +         +
Sbjct: 533 VRYAETIHASNSDLLVLINDILDLSKVEAGQLTVEPETVSIEATLQSLDEMFRPIAATKH 592

Query: 667 IRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +R+      G   +FV D QRL QI   +LSNA+ F+  G   +  A  ++    F V++
Sbjct: 593 LRVAFDKLPGTPDTFVTDGQRLTQILRNLLSNAVKFTEHGEVTLEVAKVEDNVLRFDVRD 652

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  IP D    +F+ F         Q  G GLGLSI   F  L GG ++++S     + 
Sbjct: 653 SGIGIPADKLDMIFDAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSV 712

Query: 784 INCRIPS 790
            +  +P 
Sbjct: 713 FSLWLPL 719


>gi|330894540|gb|EGH27201.1| PAS protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 1037

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 95/461 (20%), Positives = 185/461 (40%), Gaps = 14/461 (3%)

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
           +      +   +  ELL  L   NK  E+      +        S+      W       
Sbjct: 316 QWSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSALPQPSLWGRIPQWV 372

Query: 400 LHVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
             V+  +   G    ++       +  ++  E + N  +  +    D +   + V    G
Sbjct: 373 FWVLALALLTGLVSLVWSSRLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKG 432

Query: 455 RIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           R+   N ++   L  + E          N+          +D  +L       F D    
Sbjct: 433 RLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIE 492

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L G    +    + +          +  +V++T+  + E+ L +      +A+E K+ F+
Sbjct: 493 LSGKRMDVWQWTVPFFAADGQLQGLLGGWVDITERKQLEQQLQKAMRLAAQANEAKSVFL 552

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  IIG  +L     L   ++  SQ ++    S+T L+ L+ + LDLA +
Sbjct: 553 ASMSHEIRTPMGAIIGLLELECAHALRKGHTP-SQGLQVAHRSATELVALIGESLDLARI 611

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           +AG M+L+ +   L  L   V +  + +  E ++ +++  S+   G +  D  RL Q+  
Sbjct: 612 EAGGMQLSLTVTSLQALFEGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLH 671

Query: 693 KILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749
            +L NA+ F+ +GS V  + A  D+     +++++G  I  +  + +F  F   +     
Sbjct: 672 NVLGNALKFTRQGSVVLRVVALDDSSRVRIAIQDSGEGIEPERQQKIFQPFTQASDDTAA 731

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              G GLGLSI    + L  G +S+ S     T +N  +P 
Sbjct: 732 HYGGGGLGLSITRQLVELMKGDISLYSEPGEGTLVNIDLPL 772



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 27/288 (9%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + ++    +  ++ +     ++L++ ++    LFD +   ++ RD  G ++  N SY++
Sbjct: 384 LVSLVWSSRLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQ 443

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                 L    + ++M +         +      +    G        
Sbjct: 444 SLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQW 503

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR- 333
            V          G  G  +D+++   +  QL     +      A ++F  +   +     
Sbjct: 504 TVPFFAADGQLQGLLGGWVDITERKQLEQQLQKAMRLAAQANEAKSVFLASMSHEIRTPM 563

Query: 334 -SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
            + + L E++ A                     P Q      +     V    E+     
Sbjct: 564 GAIIGLLELECA-------------HALRKGHTPSQGLQVAHRSATELVALIGESLDLAR 610

Query: 393 HLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
               G  L + VTS      G I +F     + DLE +     + QG+
Sbjct: 611 IEAGGMQLSLTVTSLQALFEGVIELFSAQAREKDLELRLEFSEQAQGD 658


>gi|303241560|ref|ZP_07328060.1| histidine kinase [Acetivibrio cellulolyticus CD2]
 gi|302590878|gb|EFL60626.1| histidine kinase [Acetivibrio cellulolyticus CD2]
          Length = 1240

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 138/278 (49%), Gaps = 3/278 (1%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           ++ ++DS + Y+++    +  +     +T+    E  L E N  L++ D+ K  F  +VS
Sbjct: 558 IDYVTDSRVLYNLLTHQISSAIKFTQLITEHKEIESMLIETNNKLKELDQAKTDFFSNVS 617

Query: 578 YELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           +ELR+PLT I+G  + +L      +     S   + I +++  LL L+N +LD + + AG
Sbjct: 618 HELRTPLTIILGQVEAVLSGQYYKNTLEPNSDIFKTIQSNALRLLKLINTLLDFSKIQAG 677

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M LN   + +N  L+    ++ +   + NI +  + +        D+     + + ++S
Sbjct: 678 KMTLNRQPVNINRFLSSYISAVKSSASQKNINMIFVDNADDTFGFIDKDLFEAVIANLIS 737

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGV 754
           NA+ F+     +I++  + +  F   VK++G  IP+D   ++F+RF    N+   + RG 
Sbjct: 738 NALKFTDSEGYIIIELNKLDTSFEIVVKDSGIGIPKDKLDTIFDRFSQIENSKSSKVRGT 797

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G+GL+  +  + LH G +S+SS     +     +P  E
Sbjct: 798 GIGLAYTKEIVELHEGKISVSSILGKGSVFAVSLPVCE 835


>gi|206978261|ref|ZP_03239139.1| sensor histidine kinase ResE [Bacillus cereus H3081.97]
 gi|217959053|ref|YP_002337601.1| sensor histidine kinase ResE [Bacillus cereus AH187]
 gi|229138270|ref|ZP_04266865.1| hypothetical protein bcere0013_13910 [Bacillus cereus BDRD-ST26]
 gi|206743510|gb|EDZ54939.1| sensor histidine kinase ResE [Bacillus cereus H3081.97]
 gi|217063823|gb|ACJ78073.1| sensor histidine kinase ResE [Bacillus cereus AH187]
 gi|228645162|gb|EEL01399.1| hypothetical protein bcere0013_13910 [Bacillus cereus BDRD-ST26]
          Length = 591

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671]
          Length = 880

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 120/665 (18%), Positives = 237/665 (35%), Gaps = 87/665 (13%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV----WHRDQAGDILWANIS 221
           L+ ++ + + +E    + + ++    +  F+ LF   D       W R     + W    
Sbjct: 4   LKYIAENRLSAENGVLSPRGRETQADVPAFEPLFADSDCSAMSNTW-RGSLESLAWFMRY 62

Query: 222 YKKNTETEGIVFQKAIGESRKLFKE--EIKKRMISSSALEKNFCETVS-----TLEHGNN 274
           ++ N      + +  +  S  L      ++   +      K   E ++       +   +
Sbjct: 63  WRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVERDTALKALHERINKYRNAPQDDSGS 122

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH--------NLTVAIAIFDQNR 326
             Y I            A+           L    + +          L + + I D+N 
Sbjct: 123 NLYWISEGPRPCVGYFYALTPVYLANRLQALLGVEQTIRMENFFLPGTLPMGVTILDENG 182

Query: 327 YLQFHNRSFVELWE------IDLAFLATNPSND--ELLEFLRSANKLPEQ---LNWKTWK 375
                  + + L         D  ++         E    L     LP     + +    
Sbjct: 183 ------HTLISLTGPESKIKGDPRWMQERSWFGYTEGFRELVLKKNLPPSSLSIVYSVPV 236

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLETKY 429
           + +    +          + N   L+V+      G  ++    +  +           + 
Sbjct: 237 DKVLERIRML--------ILNAILLNVLA-----GAALFTLARMYERRIFIPAESDALRL 283

Query: 430 NTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
               +   + +     G+ +    DG   LSN     L  T  N L+     R     C 
Sbjct: 284 EEHEQFNRKIVASAPVGICILRTADGVNILSN----ELAHTYLNMLTHEDRQRLTQIICG 339

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           +  N       F  ++TS +    +LQ +           +I            V+V+  
Sbjct: 340 QQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI---------CVLVDVSSR 380

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L     +
Sbjct: 381 VKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGVDR 437

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    + 
Sbjct: 438 LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG 497

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++ G
Sbjct: 498 LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVRADGDYLSIRVRDTG 556

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +   
Sbjct: 557 VGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFT 616

Query: 786 CRIPS 790
            RIP 
Sbjct: 617 VRIPL 621


>gi|298376642|ref|ZP_06986597.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266520|gb|EFI08178.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 533

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 228/525 (43%), Gaps = 56/525 (10%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIF------DQNRYLQFHNRSFVELWEIDLAFL 346
           ++ ++  T+         +L N+  ++ I+        N    + +    +L+      +
Sbjct: 34  VNTTENKTLEQDYRDLAGLLSNIVDSLPIYFFVKDTGDNFRYVYSSPLMNQLYGRYHNDV 93

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNG--QTLHV 402
                 D  L+           +  +++++    V K+ +  +    +  P G  +T+  
Sbjct: 94  VGKTDFDLFLD----------PVVAQSFRDMDEEVVKTGKMQRFVEQMIDPKGILRTMDT 143

Query: 403 IVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           +    PR       + +  ++T Q  +E + ++  K            +A+    G+I  
Sbjct: 144 MKLLAPREDKPPYLVGISWDITKQRQVEEELHSYNKR-----------LALACQAGKIYP 192

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAIITSF-DDERKSLQ 515
               +  +  T E  L     I+++  T + +      D   ++  I T+F   E  S++
Sbjct: 193 W--LWDLVNGTAELSLEENGQIKHVQITHASFTEKIHPDYRKVYENITTAFMRGEIDSMR 250

Query: 516 GTL--ELLSDSVLEYSII-----PLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKAD 566
            +      SD  +    I       P+ + + +   + D    +   A  +      ++D
Sbjct: 251 FSFPCRYFSDEYVWLEKIGEVYEADPDGKPIRSIGILRDMTVDKRHEADVQAKRLAEESD 310

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL  S        + +Y+  I +S+  LL L+ D
Sbjct: 311 RMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEE---KKEYLRIIESSNEFLLQLIGD 367

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ +++G M+  Y+T+ L+++    +Q+ A ++   ++++   SDG     V+++ R
Sbjct: 368 ILDISKIESGKMEFIYTTLRLSEIFAPQQQAFALRVVP-DVKVIFESDGNDYCIVSEKTR 426

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+ +  LSNA+ F+S GS +       +      V + G  I ++   S+FNRFV   
Sbjct: 427 LTQVLTNFLSNAVKFTSSGS-IRFGYRLTDDGIYVYVTDTGMGISKESQASIFNRFVKLN 485

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 486 SF--KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 528


>gi|291566667|dbj|BAI88939.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1062

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 124/249 (49%), Gaps = 9/249 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
               R L +  E    A+  K+ F+ ++S+ELR+PL  I+GF  L+ T++  +L  +  Q
Sbjct: 566 QEQARQLQQAKEIADAANRSKSEFLANMSHELRTPLNAILGFAQLMSTNQ--NLAPENRQ 623

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++E I+ S   LL L+NDIL+++ ++AG   L  +   L + L  ++     +    N+ 
Sbjct: 624 HIEIINRSGEHLLGLINDILEMSRIEAGRATLQVNGFDLYEFLQGLEDLFKLRATSKNLH 683

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSV 723
           +      G +    AD ++L Q+   +L NA+ F+ +GS V ++ +  N D      F V
Sbjct: 684 LIFERPKGLIRHIKADEKKLRQVLINLLGNAIKFTDEGS-VTVRVSHQNRDASDLLQFEV 742

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  I  + C+ +F  F           G GLGL+I + F+ L G  +++ S     +
Sbjct: 743 EDTGLGIAPEDCEGLFEAFAQTETGLNASEGSGLGLAIAQQFVKLMGDEITVRSCLNRGS 802

Query: 783 TINCRIPSK 791
           T +  IP +
Sbjct: 803 TFSFTIPVQ 811



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 101/293 (34%), Gaps = 32/293 (10%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++E  + D       ++  + V + + +    +   N++ ++L  +D+         D L
Sbjct: 99  AREKVLKDSEQQFRTLIQQMQVGMLLLNAKAEILVFNQAALDLLRLDIE-------PDSL 151

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---------QTLHVIVTS 406
             F    + + E  +  +  +    V ++  T +   HL  G         + L V  T 
Sbjct: 152 QVFGEGWHLVMEDGSPISLSD--LPVQRAIATGEAVHHLVLGFDDPTTQQRRWLLVNATL 209

Query: 407 NPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           +  GG     I    ++T Q   E       +     ++  ++G+  +         +P 
Sbjct: 210 HEPGGEVMRVICTISDITNQKQAEEALRRSQERFTLAVEGANDGIWDWDISTDEVYLSPR 269

Query: 463 FRSLWKTEE--NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            + ++  +   +  S       I     R + +       A  I +FD E ++    L+ 
Sbjct: 270 GKIMFGCQPDLDCFSNLDSALKIVHPDDRLWVKEMLNSYLAKEIPAFDVEYRT---ELDN 326

Query: 521 LSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                +    + L +        +    ++TD   AE+AL E  E  R   ++
Sbjct: 327 GEWRWIRSRGVALWDEHNQPYRMVGFHTDITDRKMAEQALREGAEQERSILQM 379



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 85/287 (29%), Gaps = 39/287 (13%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-GIVFQKAIGESRK 242
           + K L +    F+ L   +   +   +   +IL  N +       +      +  GE   
Sbjct: 100 REKVLKDSEQQFRTLIQQMQVGMLLLNAKAEILVFNQAALDLLRLDIEPDSLQVFGEGWH 159

Query: 243 LFKEEIKKRMISSSALEKNFC--ETVSTLEHG-------NNKSYKIVRVLNSFGEAGIAI 293
           L  E+     +S   +++     E V  L  G         +   +   L+  G   + +
Sbjct: 160 LVMEDGSPISLSDLPVQRAIATGEAVHHLVLGFDDPTTQQRRWLLVNATLHEPGGEVMRV 219

Query: 294 -----DVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
                D++ +    + L  + E            I  +D +    + +     ++     
Sbjct: 220 ICTISDITNQKQAEEALRRSQERFTLAVEGANDGIWDWDISTDEVYLSPRGKIMFGCQPD 279

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET----HKDTWHLPNGQTL 400
                    +    L SA K+    + + W + + + Y + E      +    L NG+  
Sbjct: 280 L--------DCFSNLDSALKIVHPDD-RLWVKEMLNSYLAKEIPAFDVEYRTELDNGEWR 330

Query: 401 HVIVTS-------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            +           N     +    ++T +   E       + +   +
Sbjct: 331 WIRSRGVALWDEHNQPYRMVGFHTDITDRKMAEQALREGAEQERSIL 377


>gi|164687351|ref|ZP_02211379.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM
           16795]
 gi|164603775|gb|EDQ97240.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM
           16795]
          Length = 438

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 152/377 (40%), Gaps = 33/377 (8%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +++T +                 +  +S G+      G+I L N   + +    +  +
Sbjct: 83  TIKDITDK----------NMQLKSIMQSVSHGILAIDTKGKILLINDLAKIMVDGNQKLI 132

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G +IR                 +  +II +   E  ++     +  D++ +  I P+ 
Sbjct: 133 PEGKNIRQFI----------QNQIVLDSIIYNMSGENSTVIQK-NISKDTIYKIKIDPVH 181

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
              T      + +                K + ++  FV +VS+EL++P+T+I GF + L
Sbjct: 182 FEDTDAVIGFIINIENVTE--------YVKLENMRKEFVANVSHELKTPITSIKGFVETL 233

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K +     ++K ++++  I   +T L  L++DIL L+T++    K     + L ++  EV
Sbjct: 234 KMTDNLDDDTK-NRFLTIIENEATRLTRLIDDILLLSTIE-NKTKKKVEKVDLFEVFEEV 291

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + +     + NI++K     K          + QI   I+SNA+ ++ +  +V +K   
Sbjct: 292 HEVVNYIAKKKNIKVKYEFKNKYIDLWEYSGYIRQILLNIISNAIKYTGENGSVNIKQYI 351

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
                   VK+NG  IP++  + +F RF            G GLGL+I +  +    G++
Sbjct: 352 KAKKVFIEVKDNGIGIPQEDIERIFERFYRVDKARSRSVGGTGLGLAITKHMVKALNGNI 411

Query: 773 SISSSDEGVTTINCRIP 789
            + S     +     +P
Sbjct: 412 KVESELGVGSKFIIELP 428


>gi|239617738|ref|YP_002941060.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506569|gb|ACR80056.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 580

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 172/373 (46%), Gaps = 14/373 (3%)

Query: 422 QVDLETKYN-TLVKVQGETIDHLSEGVAV-FGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           ++D E     +  ++     +++S+ +A+     G I  S P   S+     +       
Sbjct: 200 RIDDEVNKRVSTEQMLNNMAENISDHLALRINERGEILYSTP---SMNNFVSSTKELSRF 256

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +R       + +  +    LF       D   K    + E     V  Y    L      
Sbjct: 257 LRGFDEDDRKKFLTTFEDSLFFGRQGELDLSIKPEGSSFEKRF-LVKFYPTKYLGTKVVD 315

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + F+++T+ +R E  L ++ E     ++ + +F  ++S+ELR+PLT I+G++++L     
Sbjct: 316 VFFLDITEQLRRENFLKKQKEEAELLNKSQAAFFSNISHELRTPLTIILGYSEML----Y 371

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             +   + + V  I+ S+  LL LVNDILD++ + +  +K+   ++ +  L+N + +   
Sbjct: 372 EIVGPAERRMVSMIADSANYLLKLVNDILDISKITSRAVKVEPESVNIKLLVNNILEQFN 431

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           + + +  I+++        +FV D+ +L +I + ++ NA+ F+++G   +L     +  F
Sbjct: 432 SLVEKKGIKLESKLMICRENFVTDKTKLQRILTNLIGNAIKFTNEGVVRVLVKEEGSNVF 491

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHGGHVSIS 775
           +F+V++ G  I ++    VF RFV       R    +G GLGL + +  + L GG + + 
Sbjct: 492 LFAVEDTGIGIKKEYQDKVFERFVQIKDDRSRVKFKKGTGLGLPLTKELVQLLGGRIWLQ 551

Query: 776 SSDEGVTTINCRI 788
           S     TT+   +
Sbjct: 552 SEYGKGTTVYFTL 564


>gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1361

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 126/251 (50%), Gaps = 5/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N      ++  L ++   L +A + K+ F+ ++S+ELR+PL  II  ++L+   + G L+
Sbjct: 683 NNEALQHSQHELNQRAIQLEEASQFKSDFLANMSHELRTPLNAIILISNLMSRDETGRLD 742

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  +    I  +   LL L+NDILDL+ V+AG M+++  T+   +L+ E++        
Sbjct: 743 QESIERTRVIYNAGNDLLRLINDILDLSKVEAGRMEVHLETVHSQELVEELEPLFRDSAQ 802

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIF 721
           E  I ++   D   G F +D Q+++QI   +LSNA+ F+++GS ++  A  D+       
Sbjct: 803 EKKIELRFD-DQLQGCFTSDHQKVVQILRNLLSNAIKFTAQGSVILRLAKSDHPQYPIRL 861

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV + G  I +D    +F  F     +   Q  G GLGL+I   F  L  G V + S + 
Sbjct: 862 SVTDTGIGISKDKMPYIFEAFRQMDGSISRQYGGTGLGLAITHRFATLLKGEVELHSEEG 921

Query: 780 GVTTINCRIPS 790
             +     +P 
Sbjct: 922 KGSQFTLLLPL 932


>gi|300023375|ref|YP_003755986.1| integral membrane sensor signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525196|gb|ADJ23665.1| integral membrane sensor signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 553

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 121/238 (50%), Gaps = 6/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASS 617
                 A++ K+ F+  +S+ELR+PL  I+GF+++++   LG + +    +Y   I  S 
Sbjct: 269 RRRAEAANKAKSRFLATMSHELRTPLNAIMGFSEVMEKEILGPIGSDTYREYAHNIYESG 328

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL ++N+ILDL+ ++AG   L+  T+ L D+  + ++ I  K     + I       L
Sbjct: 329 NHLLCIINEILDLSRIEAGRYDLHEETVRLTDIAEDCRRLIKIKADAKTLHIVEDFAPDL 388

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMC 735
               AD + + QI   +LSNA+ F+ +G  +++      D G F+ ++ + G  IP+D  
Sbjct: 389 PHVWADPRAMRQICLNLLSNALKFTPRGGRIVITVGHTSDGGQFV-TISDTGPGIPKDEI 447

Query: 736 KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             V   F   +  H+    G GLGL IV++ I+LHGG   + S     T +   +P +
Sbjct: 448 PRVLQAFGQGSLAHQTAEGGTGLGLPIVQNLISLHGGTFDLQSELRKGTEVTVTLPRQ 505


>gi|297518051|ref|ZP_06936437.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           OP50]
          Length = 724

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1823

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 138/321 (42%), Gaps = 30/321 (9%)

Query: 494  SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             +  +         ++ +K+LQ +   L +         L   Q     V  T+   A +
Sbjct: 1292 QELTEQLRERSAELENRQKALQASNAELEEKA------ELLAQQNRDIEVKNTEIEEARQ 1345

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ E I
Sbjct: 1346 VLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADSNLTPKQVEFAETI 1405

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  + + V  
Sbjct: 1406 HGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLSVRV 1465

Query: 674  DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KA 712
              +L  +   D QRLLQ+   +LSNA+ F+  G+  ++                      
Sbjct: 1466 SPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGRDVPVAIREQLLEAGSL 1525

Query: 713  ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               + D I FSV + G  I     + +F  F         +  G GLGLSI      L G
Sbjct: 1526 RDPDADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLG 1585

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G +   S     +T    +P 
Sbjct: 1586 GEIHAQSEPGRGSTFTLYLPL 1606


>gi|167855126|ref|ZP_02477898.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
 gi|167853761|gb|EDS25003.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
          Length = 744

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 163/381 (42%), Gaps = 18/381 (4%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETI----DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             +L++  + + + N  ++ Q E +    D   + V      G     N A   L    E
Sbjct: 91  LNDLSLLREQDARLNVELEQQAEFLRSFFDASPDLVFYRNQHGEFLGCNRAMEVLTGRSE 150

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L   T         ++   ++D   L +    +++   +     L     S  E   +
Sbjct: 151 KELLHLTPKDIYPKETAKLILDTDRDTLISNTGVTYEQWIRHSNNKL-----SCFEIRKV 205

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P  +       +        ER      E + K    K++ +  +S+ELR+PL  IIG +
Sbjct: 206 PYYDRVNECHCIMGFGRDITER--KRYQEMIEKNSRDKSTLMATISHELRTPLNGIIGLS 263

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L     G L+++Q +Y++ I+ S+  L ++ +DI+DL  +D+  ++L  S +  + L+
Sbjct: 264 RILLE---GELSAQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRIELFRSEVEFSQLI 320

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + +         +  I+  +  D  L  FV  D  RL QI   +++NA+ F+  G  + L
Sbjct: 321 SNISHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQILWNLVNNAVKFTPSGGEISL 380

Query: 711 KA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           K   RD+  + F +K++G  I +   + +F  F  + +    + +G G+GL+I +    L
Sbjct: 381 KVERRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQGKKAQGSGIGLAISKRIARL 440

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG +++ S     +     I
Sbjct: 441 MGGDLTVESELNQGSVFTLII 461



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 12/152 (7%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  L  +  + A   ++   L       +  FD+   LV++R+Q G+ L  N + +  T 
Sbjct: 91  LNDLSLLREQDARLNVE---LEQQAEFLRSFFDASPDLVFYRNQHGEFLGCNRAMEVLTG 147

Query: 228 TEGIVFQKAIG------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN---NKSYK 278
                            E+ KL  +  +  +IS++ +        S  +       K   
Sbjct: 148 RSEKELLHLTPKDIYPKETAKLILDTDRDTLISNTGVTYEQWIRHSNNKLSCFEIRKVPY 207

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
             RV       G   D+++     + +     
Sbjct: 208 YDRVNECHCIMGFGRDITERKRYQEMIEKNSR 239


>gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
 gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197]
 gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
          Length = 933

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 247/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I    +       A+           L  
Sbjct: 149 VERDTALKALHERINKYRDAPQDDSGSNLYWISEGPHPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia sp. 4_1_40B]
 gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular
           synthesis regulator component C
 gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1]
 gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520]
 gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482]
 gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88]
          Length = 949

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|237719307|ref|ZP_04549788.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451167|gb|EEO56958.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 533

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 163/380 (42%), Gaps = 26/380 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENR---LSPG 477
            + + +     K     ++++   + V  F     +   N +  + +   E+        
Sbjct: 166 REYKEREVRASKTLSSIMNNMGVDIYVNSFDSHD-MLYVNESMAAPYGGIEHFEGKKCWQ 224

Query: 478 THIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDS--VLEYSIIPL 533
              ++    C  +  +    D       + S+D +R   +    + S +   ++  I   
Sbjct: 225 ALYKDKTGEC-EFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQIA-- 281

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  L
Sbjct: 282 ----HVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASL 337

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  S       ++  YV+ +  ++ +LL L++DILDL+ ++AG +      + +     +
Sbjct: 338 LVES---DDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCED 394

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + ++   K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  ++L+  
Sbjct: 395 IMRNYDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEG-QIMLEYR 452

Query: 714 R--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              ++ +  F+V + G  I  D    VF+RFV        +G GLGLSI  S I   GG 
Sbjct: 453 HKAESNEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSFS--KGTGLGLSICRSIIEHLGGT 510

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +   S     +      P +
Sbjct: 511 IGAESEIGVGSRFWFTHPLR 530


>gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 5 str. 8401]
 gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401]
          Length = 949

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPCVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|332707075|ref|ZP_08427133.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354100|gb|EGJ33582.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 907

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 8/240 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            + E  +    A++ K+ F+ ++S+ELR+PL  I+G+  +LK     +L+ +Q+  +E I
Sbjct: 434 EIAEAKDKAEVANQAKSEFLSNMSHELRTPLNGILGYAQILKREH--NLSFRQTDGLEII 491

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL L+NDILDL+ ++A  M+L    I   + L+ V   I  +  E +I  K  +
Sbjct: 492 HKSGIHLLTLINDILDLSKIEARKMELYPDDIHFANFLDSVVGVIKMRALEKDILFKYQT 551

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN-GDFIFSVKNNGS 728
           +  L    +AD +RL Q+   +L NA+ F+ +G     V +K  + N     F + + G 
Sbjct: 552 ESNLPIGIIADEKRLRQVLLNLLGNAIKFTEQGQVTLGVRVKEYQVNTSTICFDIIDTGV 611

Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +       +F  F      + +  G GLGL+I +  + L GG + ++S     +     
Sbjct: 612 GMNPQQLHKIFLPFEQVGDTQRRSEGTGLGLAITKQLVELMGGELKVTSELGKGSKFWFE 671


>gi|313122883|ref|YP_004033142.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279446|gb|ADQ60165.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 635

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 155/407 (38%), Gaps = 40/407 (9%)

Query: 401 HVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            V + SN   G +   F  L+V+++    +  +  +     + H+++GV      G + +
Sbjct: 242 QVKIYSNDELGQLGAAFNTLSVKIERSNEQSESERRRLDSVLSHMTDGVIATDRHGNVSI 301

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWDLFAAIITSFDDERKSLQ 515
            N   +     +    +    I  +      Y ++   S+  D+   +    DDE     
Sbjct: 302 MNQMAQDFLDVKAED-AIKKPISQVLGLGEDYTSQDLISNQSDMQVTVNAGTDDE----- 355

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                    +L  S   +      ++          E+          K ++ +  FV +
Sbjct: 356 --------MILHASFTLIKRVTGFVSGAVCVLHDVTEQ---------IKNEDEQRQFVSN 398

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PLT++  + + L             Q+++     +  ++ +VND+L L+ +D 
Sbjct: 399 VSHELRTPLTSVRAYIEALNEGAWKD-PEIAPQFLDVTQKETERMIRMVNDLLVLSRMDR 457

Query: 636 GIMKLNYSTIVLNDLLNEVKQSI---------ATKMHENNIRIKVISDGKLGSFVADRQR 686
           G  KL    +   D +  +               +       IK     +      D  +
Sbjct: 458 GATKLEPEWVNFTDFVAHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQALWVEIDTDQ 517

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++++   I++NA+ +S  G T+ ++  ++    + S+ + G  IP      +F+RF    
Sbjct: 518 MMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLGIPRKDLGKIFDRFYRAD 577

Query: 747 --HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 + G GLGL+I +  +  HGG +   S +   +T    +P +
Sbjct: 578 KARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALPYE 624


>gi|292488814|ref|YP_003531701.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora CFBP1430]
 gi|291554248|emb|CBA21540.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora CFBP1430]
          Length = 987

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 159/370 (42%), Gaps = 37/370 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L       L+    +R     
Sbjct: 384 RLEEQEQFNRKIVASAPVGICILRTSDGTNILSN----ELAHNYLTLLTQEDRLRLTEMI 439

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFV 543
           C +  N       F  ++T                S++ L+ S +          +   V
Sbjct: 440 CGQQVN-------FVDVLTG---------------SNTNLQISFVHSRYRNENVAICVLV 477

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    +L 
Sbjct: 478 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK---ALP 534

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +      
Sbjct: 535 AGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMAV 594

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  + +    D  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+A        F 
Sbjct: 595 KKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGG-IILQAYVKGDYLAFR 653

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  IP      +F+ F       QR  +G GLGL+I E  +N+  G + + S    
Sbjct: 654 VRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGM 713

Query: 781 VTTINCRIPS 790
            +    RIP 
Sbjct: 714 GSQFIIRIPL 723


>gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
 gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
          Length = 949

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|262275736|ref|ZP_06053545.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
 gi|262219544|gb|EEY70860.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
          Length = 690

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 122/278 (43%), Gaps = 12/278 (4%)

Query: 523 DSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +  +  S  P  + +        T  ++T        L +  +    A+  K+ F+  +S
Sbjct: 279 EQWISLSGRPYYDKRGNCMGFRGTAKDITGRKHRVHELQQARQQAESANAAKSQFLAMMS 338

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  ++G  D L+ S    L+ +Q  +V  +  S+ +LL ++ND+ DL+ +++  
Sbjct: 339 HEIRTPLNAVMGLLDALQQSL---LDDEQVAWVSQMDKSAQLLLTIINDVFDLSRIESER 395

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILS 696
             L+   + + D +  V   +        I++++ I+D    +   D  R  QI   ++ 
Sbjct: 396 FSLHPELVNIRDSVTIVFNQLRETSSHKAIKLEMDIADNVPDNIYQDGNRFTQILLNLVG 455

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGV 754
           NA+ F+ +G  V +  +  N     SV + G  I  +  K +F  F         Q  G 
Sbjct: 456 NAVKFTEEG-RVDVAMSAVNNRLKISVSDTGIGINAERRKDIFQPFTQADGSITRQYGGT 514

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGLSI +  +++  G +   S     TT    IP  E
Sbjct: 515 GLGLSICKKLVSMMNGSIDFESKPGVGTTFFIDIPLTE 552


>gi|223937564|ref|ZP_03629467.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893727|gb|EEF60185.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 616

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 157/395 (39%), Gaps = 28/395 (7%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDL-----ETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           L  + T +  G     F  +  ++         K   L K    T+    + + V   +G
Sbjct: 230 LVPVTTRDELGDLAESFNKMAARLRAYRETTAEKIIRLHKTMESTLATFPDPIFVLNKEG 289

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           RI+L NPA   L    E+          +  T  +   + + +           +  K +
Sbjct: 290 RIELMNPAAMDLA---EDLDLKNELPERLQKTARKALADGESF---------LPNSFKEV 337

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                   +      I+P+ N    L  V +         L          D+ K + V 
Sbjct: 338 VHFRLGGDERFYLPRILPMRNEDEDLFGVAIVLYDVTRFRLL---------DDAKTNLVA 388

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            VS+E+R+PLT++     LL    +G L  KQS+ +E     S  LL ++ND+LDL  ++
Sbjct: 389 TVSHEIRTPLTSVRMVLHLLLEKTVGVLTPKQSELIETARDDSERLLRILNDLLDLTRLE 448

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            G   L        +L+  +   +        + +    D +L     DRQR+  +F+ +
Sbjct: 449 QGNSDLYKEKTSPAELVRHINDIVHDAAAARELNLVCEVDPELPLVWVDRQRIDHVFTNL 508

Query: 695 LSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           L+NA+ +S  GS VI  A   D+ D  F V++ G  IPE+    +F+RF     + +  G
Sbjct: 509 LNNAIKYSPIGSRVIFSARWSDDFDVQFIVRDFGPGIPEEYQDHIFDRFYRVPGQTKT-G 567

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGLSI    +  HGG + + S     +     +
Sbjct: 568 AGLGLSIAREIVIAHGGRIGVRSWPGQGSEFYFIL 602



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
           A      +K+       +    +    ++  ++ G I   N +     E   +       
Sbjct: 255 AYRETTAEKIIRLHKTMESTLATFPDPIFVLNKEGRIELMNPAAMDLAEDLDLK-----N 309

Query: 239 ESRKLFKEEIKKRMISS-SALEKNFCETVSTLEHGNNKSY--KIVRVLNS----FGEAGI 291
           E  +  ++  +K +    S L  +F E V     G+ + Y  +I+ + N     FG A +
Sbjct: 310 ELPERLQKTARKALADGESFLPNSFKEVVHFRLGGDERFYLPRILPMRNEDEDLFGVAIV 369

Query: 292 AIDVSKEITVNDQLTHTYEILHN 314
             DV++   ++D  T+    + +
Sbjct: 370 LYDVTRFRLLDDAKTNLVATVSH 392


>gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli APEC O1]
 gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RojN [Escherichia coli APEC O1]
          Length = 933

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 128/692 (18%), Positives = 248/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSN- 352
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 IEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 353 --DELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             D   E +   N  P  L+  +    + +    +          + N   L+V+     
Sbjct: 263 YTDGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|219870720|ref|YP_002475095.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
 gi|219690924|gb|ACL32147.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
          Length = 744

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 163/381 (42%), Gaps = 18/381 (4%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETI----DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             +L++  + + + N  ++ Q E +    D   + V      G     N A   L    E
Sbjct: 91  LNDLSLLREQDARLNVELEQQAEFLRSFFDASPDLVFYRNQHGEFLGCNRAMEVLTGRSE 150

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L   T         ++   ++D   L +    +++   +     L     S  E   +
Sbjct: 151 KELLHLTPKDIYPKETAKLILDTDRDTLISNTGVTYEQWIRHSNNKL-----SCFEIRKV 205

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P  +       +        ER      E + K    K++ +  +S+ELR+PL  IIG +
Sbjct: 206 PYYDRVNECHCIMGFGRDITER--KRYQEMIEKNSRDKSTLMATISHELRTPLNGIIGLS 263

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L     G L+++Q +Y++ I+ S+  L ++ +DI+DL  +D+  ++L  S +  + L+
Sbjct: 264 RILLE---GELSAQQREYLKTINISAVSLGHIFSDIIDLEKIDSRRIELFRSEVEFSQLI 320

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + +         +  I+  +  D  L  FV  D  RL QI   +++NA+ F+  G  + L
Sbjct: 321 SNISHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQILWNLVNNAVKFTPSGGEISL 380

Query: 711 KA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           K   RD+  + F +K++G  I +   + +F  F  + +    + +G G+GL+I +    L
Sbjct: 381 KVERRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQGKKAQGSGIGLAISKRIARL 440

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG +++ S     +     I
Sbjct: 441 MGGDLTVESELNQGSVFTLII 461



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 12/152 (7%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  L  +  + A   ++   L       +  FD+   LV++R+Q G+ L  N + +  T 
Sbjct: 91  LNDLSLLREQDARLNVE---LEQQAEFLRSFFDASPDLVFYRNQHGEFLGCNRAMEVLTG 147

Query: 228 TEGIVFQKAIG------ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN---NKSYK 278
                            E+ KL  +  +  +IS++ +        S  +       K   
Sbjct: 148 RSEKELLHLTPKDIYPKETAKLILDTDRDTLISNTGVTYEQWIRHSNNKLSCFEIRKVPY 207

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
             RV       G   D+++     + +     
Sbjct: 208 YDRVNECHCIMGFGRDITERKRYQEMIEKNSR 239


>gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
 gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
          Length = 933

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|158338239|ref|YP_001519416.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158308480|gb|ABW30097.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 2040

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 115/253 (45%), Gaps = 16/253 (6%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            +  + L         A++ K+ F+  +S+ELR+PL  I+GF+ L+       L     + 
Sbjct: 1557 QRTQQLRTAQLEAEHANQAKSDFLASMSHELRTPLNAILGFSQLMAQDAR--LPQHLGES 1614

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +  I+ S   LL+L+ND+L L+ ++AG   L   T    + L  +   +  +    N+  
Sbjct: 1615 LAIINRSGEHLLDLINDVLALSKIEAGKTTLQLDTFNFYEFLQAIHGMLQLRAKSKNLDF 1674

Query: 670  KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------- 718
                   +   + AD ++L QI   +L NA+ F+ +G  V L+    +            
Sbjct: 1675 HFEQSPDIPEVIQADERKLRQILINLLGNAIKFTEQG-RVTLRVTNAHSQSEGLTPPDIS 1733

Query: 719  -FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F V++ G+ I +D   SVF  FV   +    R+G GLGL I +SF+ L GG + + S
Sbjct: 1734 VLQFEVEDTGAGIAKDELDSVFEAFVQTQSGIKSRQGTGLGLPISQSFVQLMGGQLQVRS 1793

Query: 777  SDEGVTTINCRIP 789
             +   T     +P
Sbjct: 1794 EEGIGTCFFFNLP 1806


>gi|229189197|ref|ZP_04316221.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
 gi|228594241|gb|EEK52036.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
          Length = 896

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST------VILK------AARDNG 717
           +  SD     F  D +R+ QI   +LSNA  F+ KGS       + +        +  N 
Sbjct: 598 IKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIEISNLSHDMQSISND 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WMKISVKDTGIGISKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|91202023|emb|CAJ75083.1| hypothetical histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 545

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 131/259 (50%), Gaps = 20/259 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+  E ++ L + D +K+ F+ ++S+ L++PLT I    +L+     G ++ +Q + +  
Sbjct: 280 RSFNEMSKKLEQLDTMKSDFISNISHNLKTPLTAIKEANELMLDKIAGQISFEQMKLLNI 339

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++  L+ ++ND+LD++ ++AG+M+ N+    + D+++E  + +     +  I I+  
Sbjct: 340 IKGNTLRLILMINDLLDISRIEAGLMRYNFQPAQIRDVISESIEDVRFLTEKKGIFIQYE 399

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------- 718
            D  +   + DR ++ QI   +LSN++ F+  G  + +KA   +                
Sbjct: 400 DDSLVPHVLLDRGKIAQIMDNLLSNSIKFTPTGGVITIKAFVVDASMLSPIFAQQGKLNN 459

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                  S+ + G  IP++   S+F++F    ++ +    G GLGL I +  +  HGG++
Sbjct: 460 IQSFLQISISDTGIGIPKEHQNSIFDKFQQVVNKRESGIKGTGLGLFIAKHIVEDHGGNI 519

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S+    +T +  +P +
Sbjct: 520 WLESNCGSGSTFHFTLPLR 538


>gi|46200809|ref|ZP_00056331.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 549

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 157/375 (41%), Gaps = 17/375 (4%)

Query: 433 VKVQGETIDHL----SEGVAVFGPDGRIKLSNP----------AFRSLWKTEENRLSPGT 478
           ++     +D      S+   +  PDG I   +P          A +  ++T         
Sbjct: 170 LEQLASILDAAAPDSSDSALLVSPDGTILARSPDHVRYVGKSLAGQPAFETARTAPEGSG 229

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            I +      R Y            + S D E +  +  L  ++       +  +  A  
Sbjct: 230 EILSPLDGRKRLYAFHKASSHPVIAVASHDQEAQLREWRLHSMTLVASALLVGLIIGALA 289

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +     +    R    L         A+  K++F+ ++S+ELR+PL  IIGF+D L    
Sbjct: 290 LFLARQLERMDRTLSELARSRREADAANRAKSAFLANMSHELRTPLNAIIGFSDALLVGI 349

Query: 599 LGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            G    S+   Y+ ++  SS  LL+L+NDILDL+ ++AG  ++  +   L  L+ E  + 
Sbjct: 350 PGHTCQSRCQDYLGHVQTSSRHLLSLINDILDLSKIEAGSTEIALAPTPLALLITECLEI 409

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  K    NI + +    +      D +RL QI   +LSNA+ F+ +G  +IL+A  D+G
Sbjct: 410 VRAKAESKNISVALAGPDQDLMVTTDSRRLRQIVLNLLSNAVKFTPEGGRIILEAECDSG 469

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               +V + G  + ++        F  N     RR  G GLGL + +    L GG +S++
Sbjct: 470 QLALTVNDTGIGMTQEEIAVALTPFGQNDSDLARREAGTGLGLPLSKRLTELLGGTLSVT 529

Query: 776 SSDEGVTTINCRIPS 790
           S     TT+   +P 
Sbjct: 530 SIPGRGTTVTISLPL 544


>gi|330982197|gb|EGH80300.1| response regulator receiver [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 1031

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 159/364 (43%), Gaps = 14/364 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ +++ V           S  A R   + +E           +     
Sbjct: 224 LRALTERDIEFLELVADNVGT---------SIEAARYRQRLQEVLAETQQLNEELQVQQE 274

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + I+       ++ Q  LE  ++ + + S       Q      N  + 
Sbjct: 275 ELRTANEELEEQSRILKESQAHLETQQAELEQTNEQLADQSQALAE--QRDALDRNNEEL 332

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q +
Sbjct: 333 NIAQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK 392

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD++ V+AG +++      +  L+  ++        E  + 
Sbjct: 393 FAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLA 452

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             V    G       DRQRL QI   +LSNA+ F+  GS  ++ + +      F V+++G
Sbjct: 453 FTVDIQTGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRQPGAGIAFIVRDSG 512

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  + +F  F        RR  G GLGLSI      L GG +S++S+    +  +
Sbjct: 513 IGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFS 572

Query: 786 CRIP 789
             +P
Sbjct: 573 LVLP 576


>gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
          Length = 933

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82]
 gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15]
 gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O83:H1 str. NRG 857C]
 gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 16-3]
 gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86]
          Length = 933

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
 gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
          Length = 949

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
          Length = 933

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRTDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|237713651|ref|ZP_04544132.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406251|ref|ZP_06082800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643736|ref|ZP_06721535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810105|ref|ZP_06768776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446373|gb|EEO52164.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354954|gb|EEZ04045.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640920|gb|EFF59139.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442709|gb|EFG11505.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 533

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 163/380 (42%), Gaps = 26/380 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENR---LSPG 477
            + + +     K     ++++   + V  F     +   N +  + +   E+        
Sbjct: 166 REYKEREVRASKTLSSIMNNMGVDIYVNSFDSHD-MLYVNESMAAPYGGIEHFEGKKCWQ 224

Query: 478 THIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDS--VLEYSIIPL 533
              ++    C  +  +    D       + S+D +R   +    + S +   ++  I   
Sbjct: 225 ALYKDKTGEC-EFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQIA-- 281

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  L
Sbjct: 282 ----HVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASL 337

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  S       ++  YV+ +  ++ +LL L++DILDL+ ++AG +      + +     +
Sbjct: 338 LVES---DDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCED 394

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + ++   K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  ++L+  
Sbjct: 395 IMRNYDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEG-QIMLEYR 452

Query: 714 R--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              ++ +  F+V + G  I  D    VF+RFV        +G GLGLSI  S I   GG 
Sbjct: 453 HKAESNEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSFS--KGTGLGLSICRSIIEHLGGT 510

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +   S     +      P +
Sbjct: 511 IGAESEIGVGSRFWFTHPLR 530


>gi|325959251|ref|YP_004290717.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330683|gb|ADZ09745.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 800

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 89/566 (15%), Positives = 192/566 (33%), Gaps = 54/566 (9%)

Query: 271 HGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNR 326
            G +  +         G A     V+      ++L  + E    +  NL+V I++ D   
Sbjct: 233 DGIDDWFYATVTPIPDGIAISIQIVTDHKKAQEKLVESKEKLNTLFENLSVGISVIDNEG 292

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            + + N +   +  +    L       +  E     +   E    +      F      +
Sbjct: 293 KVIYENPALERILGLSETEL----KLGKYGERKYYNSDYSEIPPDELPSSRAFEEQTPIK 348

Query: 387 THKDTWHLPNGQTLHVIVT----SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             +    + N   +   V+    S P    + +  ++T    +E K     +        
Sbjct: 349 DIEVGVLIDNNNMIWTNVSAIPLSFPDWKMLLVTYDITKSKKVEEKLQESYERFNLAQKV 408

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLF 500
            + G   +     + +  P   +++  +E     + G     +     +         L 
Sbjct: 409 SNIGTFEWNIQTGVNIWTPELEAIYGLKEGEFPGTQGAWEELVHPDDKQKAINGVDIALK 468

Query: 501 AAIITSFDDERKSLQGTLELLSDSV---------------LEYSIIPLPNAQ-------- 537
               T  +   K   G++  L                   +   I  L   +        
Sbjct: 469 TGEPTESEFRVKWADGSVHWLLGRWQVIKGDDGELLKLIGINVDITALKEYEFKQQNLLE 528

Query: 538 -----TMLTFVNVTDSVRAERALTEKNEALRK-------ADEIKNSFVQHVSYELRSPLT 585
                T    ++  +  +    L  + +   +       +++    F    S++L+ PL 
Sbjct: 529 NEKELTNKLHISNQELEKVNIELIHQQDVQNRLIRKLEVSNKELEQFAYVASHDLQEPLR 588

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +  FT LL       L+S    Y+E+I   S  + +L++D+L  + ++    +  +S  
Sbjct: 589 MVTSFTQLLAMKYKDKLDSDADDYIEFIVEGSHRMKDLIDDLLAYSRLNTEKTEYQFS-- 646

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            LN LL+ V   +   + E  ++I      +L +   D  +L Q+F  ++SN++ F    
Sbjct: 647 DLNQLLDNVLLGMKNTIVEEGVQIT---RDELPTVRCDSSQLGQVFQNLISNSIKFHKTN 703

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             + + A     ++I  V + G  I  +  + +F+ F     R +  G G+GLSI +  +
Sbjct: 704 PKIHISAEETREEWIVGVSDEGIGIDPEHQQQIFDVFKRLHSRKKYPGTGIGLSICKRVV 763

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
             H G + + S     ++    +P K
Sbjct: 764 ERHNGKIWVESELGYGSSFYFTLPKK 789



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 19/182 (10%)

Query: 390 DTWHLPNG--QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +  +  +G     +  VT  P G      + +T     + K     +      ++LS G+
Sbjct: 227 EEHYSSDGIDDWFYATVTPIPDG-IAISIQIVTDHKKAQEKLVESKEKLNTLFENLSVGI 285

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII--- 504
           +V   +G++   NPA   +    E  L  G +         R Y  SD  ++    +   
Sbjct: 286 SVIDNEGKVIYENPALERILGLSETELKLGKY-------GERKYYNSDYSEIPPDELPSS 338

Query: 505 TSFDDERKSLQGTLELLSDS----VLEYSIIPL--PNAQTMLTFVNVTDSVRAERALTEK 558
            +F+++       + +L D+        S IPL  P+ + +L   ++T S + E  L E 
Sbjct: 339 RAFEEQTPIKDIEVGVLIDNNNMIWTNVSAIPLSFPDWKMLLVTYDITKSKKVEEKLQES 398

Query: 559 NE 560
            E
Sbjct: 399 YE 400



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 110/328 (33%), Gaps = 31/328 (9%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              ++  +   + + D N  +   N  F   + +D +    N   D         N   +
Sbjct: 19  LESVMDIIREPLIVLDANLRVITFNDPFSNYFNVDPSDTVGNLIYDI-------NNGEWD 71

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--TLHVIVTS---NPRGGTIWM-FENLTV 421
             + +   E+I       +  +      NG    L++   S     +   I +   ++T 
Sbjct: 72  SPDLRRLLEDILPESPPIKDFEMNHFFENGTPKILNLNAQSFECRDQKPMILISINDITE 131

Query: 422 QV----DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
                  L+        VQ  ++D  +    V+   G I      F  +++  +   S G
Sbjct: 132 HKLTIEKLQESEKHFQAVQKNSLDRFTILKPVYDDQGEIVD----FSYIYQNAQAAKSTG 187

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY---SIIPLP 534
            +   I          +     F  +     + ++ ++      SD + ++   ++ P+P
Sbjct: 188 RNSEEIIGLRMTELWPTFTQTNFFNMYKEAVNTQEVVEFEEHYSSDGIDDWFYATVTPIP 247

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR----SP-LTNIIG 589
           +   +   + VTD  +A+  L E  E L    E  +  +  +  E +    +P L  I+G
Sbjct: 248 DGIAISIQI-VTDHKKAQEKLVESKEKLNTLFENLSVGISVIDNEGKVIYENPALERILG 306

Query: 590 FTDL-LKTSKLGSLNSKQSQYVEYISAS 616
            ++  LK  K G      S Y E     
Sbjct: 307 LSETELKLGKYGERKYYNSDYSEIPPDE 334


>gi|293368955|ref|ZP_06615556.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635975|gb|EFF54466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 534

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 163/378 (43%), Gaps = 22/378 (5%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENR---LSPG 477
            + + +     K     ++++   + V  F     +  +N +  + +   E+        
Sbjct: 166 REYKEREVRASKTLSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEGKKCWQ 224

Query: 478 THIRNIAATCSRYYNESDGWDL--FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              ++    C  +  +    D       + S+D +R   +    + S +   ++ I    
Sbjct: 225 ALYKDKTGEC-EFCPKKHLIDENGLPTKVYSWDYQRPFDKCWFRVFSAA---FAWIDGQM 280

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  + T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL 
Sbjct: 281 AHVI-TSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLV 339

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S       ++  YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ 
Sbjct: 340 ES---DDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDII 396

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AA 713
           ++   K  +  + + +           D++RL+Q+ +  ++NA+ F++KG  ++L+    
Sbjct: 397 RNYDIK-EDKPVPVLLAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKG-QILLEYHLK 454

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            D  +  FSV + G  I  D    VF+RFV        +G GLGLSI  S I   GG + 
Sbjct: 455 EDTSEIEFSVADTGMGIEPDKVDRVFDRFVKLNSFS--KGTGLGLSICRSIIEHLGGTIG 512

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S     +      P +
Sbjct: 513 VESEMGTGSRFWFTHPYQ 530


>gi|258621420|ref|ZP_05716454.1| sensor histidine kinase [Vibrio mimicus VM573]
 gi|258586808|gb|EEW11523.1| sensor histidine kinase [Vibrio mimicus VM573]
          Length = 733

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 17/279 (6%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E  II +           +    +    L  +    + + + K++F+  +S+E+R+P+  
Sbjct: 312 EGEIIDIRYKNQDEIRHLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNG 371

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   +L   +   L +KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS   
Sbjct: 372 VLGTAQILLKDE---LTAKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFP 428

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  ++  +K   ++   E  ++ ++ S+      +  D+ RL QI   +LSNA+ F+ +G
Sbjct: 429 LRSIIGSIKSIYSSLCFEKGLQFQLHSEIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQG 488

Query: 706 STVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             V +  + +N D        V+++G  IP+D    +F  F        RR  G GLGL+
Sbjct: 489 -FVSVGLSEENIDDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLA 547

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI------PSKE 792
           IV+    L  G VS+ S     T    R+      P KE
Sbjct: 548 IVKQIAELMSGTVSVQSEVGQGTCFEVRVKLAASEPIKE 586


>gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14]
          Length = 933

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|296822116|ref|XP_002850232.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
 gi|238837786|gb|EEQ27448.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
          Length = 2349

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+T +IG ++LLK +K   L+ KQ  YV
Sbjct: 1836 AEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATK---LDPKQDVYV 1892

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     E  +   
Sbjct: 1893 ESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETV 1952

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
               D    +   + D  RL QIF  +LSN+  F+ KGS V ++A  +            V
Sbjct: 1953 EDLDSIDPNLLVMGDPVRLHQIFMNLLSNSYKFTPKGS-VTVQAIVEEDTPEQIRVTCKV 2011

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I E+    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 2012 ADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGE 2071

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2072 GTTVTFTL 2079


>gi|14906039|gb|AAK72489.1| GacS [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 917

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V      +  +       S+++ G 
Sbjct: 387 YRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 933

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|332534443|ref|ZP_08410282.1| putative sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036096|gb|EGI72572.1| putative sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1252

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 103/502 (20%), Positives = 195/502 (38%), Gaps = 40/502 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                 L     +L+++   I   + +      N++F      D   L      D+L + 
Sbjct: 398 EAKERHLALLNTMLNSVPDLIYFKNIDGSFLGCNKAFEAYIGKDQTALVGK-YVDDLGDN 456

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIWMFE 417
            +  N L +Q+      +N  SV K  ET   ++ L    T+      +    GT+ +  
Sbjct: 457 DQQINALEKQV-----LQNRNSVEKRIETDTKSYQL----TIAPFYNEHQHLLGTMGIGR 507

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T Q        +        I+  +  V +   +  I   N A R  +  ++      
Sbjct: 508 DITEQQQALLALKSSESKFRSAIEFAANCVVLLSLEHTILQVNKAARKQFSEQQVL---- 563

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL---ELLSDSVLEYSIIPLP 534
                +       +++S    +   +    DD+++    TL    L S   L  S++   
Sbjct: 564 -----VGEQLKALFDDSQWQQIKTTLAQLLDDKKRVYHLTLSQGRLTSWLQLSVSLVWDE 618

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N       +++ D      ALT+      +A   K+ F+ ++S+E+R+PL  ++G  D+L
Sbjct: 619 NRDPAYYVIHIQDVS----ALTKSKLDAERATLAKSRFIANLSHEIRTPLNAVLGLLDML 674

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                  L  KQ Q  +    ++  LL ++N +LD A +++    L  ++  + +L++  
Sbjct: 675 IEQ---GLTQKQLQQTDQAKHAAQSLLLMLNRMLDFARIESSQTDLKQASFSMVELVDIC 731

Query: 655 KQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +   A       I   +  D  +    + D  RL QI   +L+NA+ F+  GS + LK  
Sbjct: 732 ESLTAPLCEGKGIEFVIDIDPLIAPDLICDSIRLQQILGNLLTNAVKFTKTGS-ITLKME 790

Query: 714 ------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
                  +     F V + G  I E   + +F+ F        R   GVGLGL+IV+  +
Sbjct: 791 LIESNSLEQQHICFKVIDTGMGIDEADQRRLFDAFTQGDESSTRIHHGVGLGLAIVKHAV 850

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
           +L GG +++ S           
Sbjct: 851 SLMGGEIALKSKKGHGCEFYFS 872



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  +  + +   +    H+++   + +S+  L++ ++  G  L  N +++      G   
Sbjct: 386 VQLQSEKLSRSYEAKERHLALLNTMLNSVPDLIYFKNIDGSFLGCNKAFEAYI---GKDQ 442

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFG 287
              +G+      +  ++       + +N   +V      + KSY++          +  G
Sbjct: 443 TALVGKYVDDLGDNDQQINALEKQVLQN-RNSVEKRIETDTKSYQLTIAPFYNEHQHLLG 501

Query: 288 EAGIAIDVSKEIT----VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
             GI  D++++      +    +     +      + +      +   N++  + + 
Sbjct: 502 TMGIGRDITEQQQALLALKSSESKFRSAIEFAANCVVLLSLEHTILQVNKAARKQFS 558


>gi|260177204|gb|ACX33927.1| putative response regulator receiver sensor signal transduction
           histidine kinase [uncultured prokaryote AT5]
          Length = 378

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 140/294 (47%), Gaps = 4/294 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            + II S   +  +++  +   +   L   I  L    T+   +   + +R  R    +N
Sbjct: 80  LSTIIVSAYGDMANIRTAMNRGAFDFLTKPIDFLDFESTITKTIRHVEVLREARRREAEN 139

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L  A   K+ F+  +S+ELR+PL  IIG T+++ ++       K  + +  ++A+ T 
Sbjct: 140 QRLEAASHNKSQFLADMSHELRTPLNAIIGLTEMMVSNAARFGTEKALEPLRRVNAAGTH 199

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+N++LDL+ ++AG ++LN   + L  +++EV  +      +N  R+ V +   LG+
Sbjct: 200 LLSLINEVLDLSKIEAGKLELNPEPVNLARVIDEVIGTAGQLAEKNQNRLIVEAQDNLGA 259

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           F AD  RL QI   +LSNA  F+ +G     + K A        +V + G  +  +    
Sbjct: 260 FTADPLRLKQILLNLLSNACKFTKEGDVALRVRKVADGRDWVELAVADTGIGLTAEQQAK 319

Query: 738 VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F         +  G GLGL++      + GG V+++S     +    R+P
Sbjct: 320 LFQEFTQADSLTARRYGGTGLGLALSRKLARMMGGDVTVASEPGKGSVFTVRLP 373


>gi|21702685|gb|AAM76053.1| two-component sensor kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V      +  +       S+++ G 
Sbjct: 387 YRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|6273355|gb|AAF06332.1|AF192795_1 two component histidine sensor kinase GacS [Pseudomonas
           chlororaphis]
 gi|88604817|gb|ABD46754.1| two-component histidine kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V      +  +       S+++ G 
Sbjct: 387 YRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|206901128|ref|YP_002250960.1| sensory box histidine kinase [Dictyoglomus thermophilum H-6-12]
 gi|206740231|gb|ACI19289.1| sensory box histidine kinase [Dictyoglomus thermophilum H-6-12]
          Length = 350

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 152/355 (42%), Gaps = 28/355 (7%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           +++  G+ +   DG +  +N   + L+  + N+ +    I  I         + +  DL+
Sbjct: 15  ENVQIGILIVDKDGLVIFANNKAKELFDIKNNKNNNKKLIELI--------PDYEIDDLY 66

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              + +    + +L           LE     L   Q +L  +N                
Sbjct: 67  KKTLQNKSYNKTNLN--FWGKEKKYLEVEAFYLSGNQEVLLIINDY-------------T 111

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L + +E    F+ + S+ELR+PLT+I    DL    K+ +L+   +++  Y+      +
Sbjct: 112 PLYRLEENFKEFLGNASHELRTPLTSIQILIDLFSERKI-TLDEIYNEFFPYLRKEVERM 170

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV+++L+L+ ++AG++ L    + L +++ E+   +   + + N+ I +    K+   
Sbjct: 171 SKLVSNLLNLSRLEAGVIDLQLKEVNLTEIIMEIVDRLTPHISKKNLEINLKIPEKVI-V 229

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD Q +  I   I+ NA+ ++    ++ +    D+ + +  VK+ G  IPE     +F+
Sbjct: 230 SADPQHVDTIIFNIVENAVKYTPPSGSIEIGINEDSDNVVLWVKDTGIGIPEKDLNRIFD 289

Query: 741 RFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RF               GLGLSIV+  I  HG  +++ S     T     IP ++
Sbjct: 290 RFYRVNKSRTNEDGFSTGLGLSIVKKLIERHGWSITVESKVNKGTKFEIIIPKRK 344


>gi|124005780|ref|ZP_01690619.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123988848|gb|EAY28454.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 662

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 167/379 (44%), Gaps = 37/379 (9%)

Query: 447 VAVFGPDGRIKL-SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL--FAAI 503
             +F P+G++    N          ++       + ++  T +         +       
Sbjct: 18  FILFTPEGKLVQTCNTLLDLNVYLNQSIFPVFPFLESLQDTLALLEPGQPPLEFPRLENF 77

Query: 504 ITSFDDERKSLQGTLE-LLSDSV--LEYSIIPLPNAQTMLTFVNV--------------- 545
           ++  D   K L   +E +L++ V  L   I   P+A   +  +                 
Sbjct: 78  VSGIDTSFKVLDCRIECILNNQVPTLLLVIEHHPDAHQYIFQIQQEGKESAIQKELLAVQ 137

Query: 546 TDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             S+  E+ L   KNE L++ ++ K++F   +S+ELR+PL  IIG TDLL        N 
Sbjct: 138 NRSIELEKELLQLKNEELKRIEQFKSNFFAEISHELRTPLNGIIGLTDLLLEVM---TNP 194

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             + Y++ I +S   L+ +VND+LD++ +++G M+   + I L ++L  +  S   K  +
Sbjct: 195 HHADYLKAIQSSGNHLVTIVNDVLDMSKIESGQMQFEETHINLPEMLQNIVLSFKQKFMQ 254

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKA------AR 714
             I++  +    +    + D+ RL QI   ++ NA+ F+S+G     +   A        
Sbjct: 255 KGIQVNTVLATDVPEEVLGDKVRLTQILYNLVGNAIKFTSEGEVSIEITFVAPVPSADQA 314

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           +     F VK++G  I ++  + +F  +   + +  R   G GLGLSIV   I L GGH+
Sbjct: 315 EQIQLDFIVKDSGIGIKKERLQQIFEPYQQASKQTTRLYGGTGLGLSIVRQLIELQGGHI 374

Query: 773 SISSSDEGVTTINCRIPSK 791
           S++S     T  N  +P K
Sbjct: 375 SVNSRWGEGTIFNFVLPLK 393


>gi|330811212|ref|YP_004355674.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379320|gb|AEA70670.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 916

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V      D  +       S+++ G 
Sbjct: 387 YRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  +   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|295699239|ref|YP_003607132.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295438452|gb|ADG17621.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 979

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 153/380 (40%), Gaps = 34/380 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +   +      +    +     G A+     G I L +   R+        L+       
Sbjct: 359 ERSQRVFESEALNRTMVAAAPSGFALLSFEQGDILLQSNLMRA------YELNTHPDEPR 412

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNAQ--- 537
           +       Y+ S G   + +           L+  L L    V  L  SI+         
Sbjct: 413 LHERLLGLYDRSPGAPAWQS----------DLEMPLRLADGRVDDLLVSIVRTKYRGKDV 462

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + +F +VT     ER L E   A   A++ K++F+  +S+E+R+PL  I+G  +LL  S
Sbjct: 463 LLCSFSDVTTLKNTERKLDEARAAADAANQAKSAFLAMMSHEIRTPLNAILGNLELLGRS 522

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            L  L   Q + V  +++SST LL ++NDILD + V++G M L   +  L  ++ EV   
Sbjct: 523 PLSPL---QEERVGVVTSSSTALLGIINDILDFSKVESGQMTLESISFDLAQVIREVAAM 579

Query: 658 IATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                    +    + D  L   ++ D  R+ QI   ++SNA+ F++ G  V+L+    +
Sbjct: 580 FEPVAQAKGLEFDCVIDDALAPHYLGDPTRIRQIVINLVSNAIKFTATGD-VLLEVYLKD 638

Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
                   +  V + G  +     +S+F+ F         +  G GLGL++      L  
Sbjct: 639 DTAEDSPIVIGVSDTGIGMTPQQQESLFHAFTQADSSIARRYGGTGLGLALCLRLTELMH 698

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S     +T    +P
Sbjct: 699 GTIWVKSELHAGSTFVVTLP 718


>gi|229160527|ref|ZP_04288522.1| hypothetical protein bcere0009_13190 [Bacillus cereus R309803]
 gi|228622937|gb|EEK79768.1| hypothetical protein bcere0009_13190 [Bacillus cereus R309803]
          Length = 591

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGAVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDLKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GKGTTFSVYLPNR 589


>gi|163750003|ref|ZP_02157247.1| sensor histidine kinase/response regulator [Shewanella benthica
           KT99]
 gi|161330277|gb|EDQ01258.1| sensor histidine kinase/response regulator [Shewanella benthica
           KT99]
          Length = 937

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 12/245 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L+S Q  YV  
Sbjct: 287 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHSSQQDYVNT 342

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+T LL  +NDILD + ++AG M L      L + L++    ++    + +I + V 
Sbjct: 343 IEKSATNLLGSINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSARDKDIELVVD 402

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNG 727
            D  +      D  R  QI + ++ NA+ F+  GS      +++A  D       V + G
Sbjct: 403 IDPSIPEDLSGDAMRFSQIITNLVGNAIKFTESGSVHLKLQLIEATDDKVKLRCEVIDTG 462

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ED  + +F  F        RR  G GLGL I +  +N  GG +   S     +T  
Sbjct: 463 IGIDEDQQELLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCHSKPNTGSTFW 522

Query: 786 CRIPS 790
             +P 
Sbjct: 523 FTLPL 527


>gi|134076372|emb|CAK39626.1| unnamed protein product [Aspergillus niger]
          Length = 1306

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 707 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 764

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 765 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 824

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G   +     D          F FSV + G  I
Sbjct: 825 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTICKSDREQCAADEYAFEFSVSDTGIGI 884

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 885 EEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 943


>gi|323487713|ref|ZP_08092971.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
 gi|323398447|gb|EGA91235.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
          Length = 608

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 158/396 (39%), Gaps = 29/396 (7%)

Query: 402 VIVTSNPRGGTIW-MFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V V S+   G +   F +LT ++ + +    +  +     + ++++GV      GRI L 
Sbjct: 230 VRVYSDDEIGQLARAFNHLTNRLQESQQSTESERRKLASVLSNMTDGVLSTDRRGRIILI 289

Query: 460 N-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           N PA + L  + E  ++    + ++      Y               +  D ++S+   L
Sbjct: 290 NDPALQLLNVSRETVIN--RPVTSVLGLEEEY------------TFENLIDMKESVTLDL 335

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                S L  +   +   +T      +        A+   N    K D  +  FV +VS+
Sbjct: 336 SSYEQSTLLRTTFSVIQKETGFVNGLI--------AVLHDNTEQEKIDIERREFVANVSH 387

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT +  + + L        +     ++      +  ++ LVND+L L+ +D+   
Sbjct: 388 ELRTPLTTMRSYLEALADGAWQDPD-LAPNFLNVTQTETERMIRLVNDLLKLSKMDSSET 446

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L+   +  N   N +          + +        +      D  +L Q+   I+SNA
Sbjct: 447 ELSKEMVEFNVFFNRIIDRFEMS-KSHKVNFMRQLPKEQYFVEIDPDKLTQVIDNIISNA 505

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           + +S +G  V      + G  +  + + G  IP++    +F+RF        R   G GL
Sbjct: 506 LKYSPEGGKVRFNMTVEEGYLLIQISDEGMGIPKENVDRIFDRFYRVDRARSREMGGTGL 565

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL+I +  IN HGG +   S     T+I   +P +E
Sbjct: 566 GLAISKEMINAHGGVIWAESKLGKGTSIFFTLPFEE 601



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 23/170 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + +   +      +L N+T  +   D+   +   N   ++L  +    +   P    L
Sbjct: 254 ESQQSTESERRKLASVLSNMTDGVLSTDRRGRIILINDPALQLLNVSRETVINRPVTSVL 313

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIW 414
                    L E+  ++   +   SV     +++ +  L    T  VI        G I 
Sbjct: 314 G--------LEEEYTFENLIDMKESVTLDLSSYEQSTLLR--TTFSVIQKETGFVNGLIA 363

Query: 415 MFENLTVQ--VDLETK---------YNTLVKVQGETIDHLSEGVAVFGPD 453
           +  + T Q  +D+E +           T +      ++ L++G     PD
Sbjct: 364 VLHDNTEQEKIDIERREFVANVSHELRTPLTTMRSYLEALADGAWQ-DPD 412


>gi|289641928|ref|ZP_06474083.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
            glomerata]
 gi|289508228|gb|EFD29172.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
            glomerata]
          Length = 1215

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 143/302 (47%), Gaps = 13/302 (4%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             AA + +  +E +S Q  L+  +  + E +   L   Q     +   +  +  + + E+ 
Sbjct: 711  LAAELRARSEELQSRQDELQRSNAELAEKAA--LLARQNHDIEIKNFEIEQTRQEIEERA 768

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ K+ +Y   I ++ + 
Sbjct: 769  RQLALSSRYKSEFLANMSHELRTPLNSLLILARLLAQNPANNLSPKEVEYANVIHSAGSD 828

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG + ++     L+ LL++V+      + E  +R  V     +  
Sbjct: 829  LLQLINDILDLSKVEAGKIDIHLERFALSALLDDVQGIFCPIIEEKGLRFTVEVAPDVPD 888

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD-----FIFSVKNNGSSI 730
            + V+D+QRLLQ+   +LSNA+ F+  G     + + + R   D       F+V + G  I
Sbjct: 889  ALVSDQQRLLQVLRNLLSNAVKFTQLGGVELRIRVVSDRVLDDERRPAVAFAVIDTGIGI 948

Query: 731  PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             E+    +F  F        RR  G GLGLSI      L GG +   S     +T    +
Sbjct: 949  AEENLDRLFGAFQQGDGSTSRRFGGTGLGLSIAREVAALLGGVIRAQSEFGQGSTFTLYL 1008

Query: 789  PS 790
            P 
Sbjct: 1009 PL 1010


>gi|77459260|ref|YP_348767.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77383263|gb|ABA74776.1| sensor protein RcsC putative two-component system, sensor kinase
           [Pseudomonas fluorescens Pf0-1]
          Length = 936

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 119/657 (18%), Positives = 225/657 (34%), Gaps = 70/657 (10%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD---FLVWHRDQAGDIL 216
           +G  A L  LSL           L  +++       ++L        + +W   +  D L
Sbjct: 70  TGREALLESLSLSATRQTALSAPLSEEEI-------RLLLGHPPGKQWSIWLTQRMRDFL 122

Query: 217 WA---NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
            A   N+ Y  +     +            F  E+  R+ +         + +    +  
Sbjct: 123 QARKLNLLYVSSGADAQVWRLYNTTPMADDFPHEMLDRLETLKCDNNGALKEIWLTHNWQ 182

Query: 274 NK-----SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
                    ++       G  G+ +D  +        +     + N +  + +F  +   
Sbjct: 183 GHSQLYIFIRLDERDLDSGWLGLEMDDREVSNALSDHSAGEFTMFN-SQGMPLFSNSHK- 240

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
                    L  +          +  L E L    +L       T+  ++ +V  +    
Sbjct: 241 ---PPPGQNLPLLRQQDFFGFVGDGWLPEQLVLRKQLKSSDRQLTYSIDLLAVLWALWPQ 297

Query: 389 ---KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                 + L +   + +++            + +   V+ E           + I     
Sbjct: 298 LLGALAFCLASISLVWLLIRRLEHRFITPTLQRIQALVESEL-------FSRDVIQTAPV 350

Query: 446 GVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            + V    D R+ L N   R        +L PG                         I 
Sbjct: 351 ALCVLRRSDARVVLENTLARHWLGECGQQLGPG------------------------WIR 386

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEA 561
            +F D+   L    E      L  S  P         +  F +++   + E AL    ++
Sbjct: 387 AAFADKSPCLTDYFETADGRHLYLSCAPTRYKGEDVLLCAFSDISARRQIEAALERARQS 446

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+E K  F+  +S+E+R+PL  ++G  +LL  ++   L+++Q  Y+  I  SS  LL
Sbjct: 447 ADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQ---LDTQQKSYLRAIEGSSATLL 503

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            L+ D+LD++ ++AG + L  S   +  L  EV Q  A       +++    D +L  S 
Sbjct: 504 QLICDVLDVSKIEAGQLALELSDFSIVALAQEVVQGYAAAAQSKGLQLYACFDPQLPDSL 563

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIF--SVKNNGSSIPEDMCK 736
           + D  R+ QI + +LSNA+ F+  G  V+     +R+         V + G  I  D   
Sbjct: 564 IGDISRVRQILNNLLSNAVKFTDSGRVVLRVNVLSREGERVCVQWQVSDTGRGIAHDDQA 623

Query: 737 SVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F  F     +     G GLGL I     NL  G + + S     ++ +  +P ++
Sbjct: 624 FIFEPFYQTRGNSHVIAGTGLGLPICLRLTNLMNGTLRMVSEPGLGSSFSLTLPLEQ 680


>gi|292899966|ref|YP_003539335.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291199814|emb|CBJ46937.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
          Length = 956

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 159/370 (42%), Gaps = 37/370 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L       L+    +R     
Sbjct: 353 RLEEQEQFNRKIVASAPVGICILRTSDGTNILSN----ELAHNYLTLLTQEDRLRLTEMI 408

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFV 543
           C +  N       F  ++T                S++ L+ S +          +   V
Sbjct: 409 CGQQVN-------FVDVLTG---------------SNTNLQISFVHSRYRNENVAICVLV 446

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    +L 
Sbjct: 447 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK---ALP 503

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +      
Sbjct: 504 AGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMAV 563

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  + +    D  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+A        F 
Sbjct: 564 KKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGG-IILQAYVKGDYLAFR 622

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  IP      +F+ F       QR  +G GLGL+I E  +N+  G + + S    
Sbjct: 623 VRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGM 682

Query: 781 VTTINCRIPS 790
            +    RIP 
Sbjct: 683 GSQFIIRIPL 692


>gi|218779276|ref|YP_002430594.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760660|gb|ACL03126.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 589

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 148/379 (39%), Gaps = 31/379 (8%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           M ++L  ++D  T+    ++     +  + EGV       RI   N A   +   +    
Sbjct: 235 MAKDLKGRIDFITRQKNQME---AVLASMVEGVIALDTGQRIISMNQAAGRMLSCDPRT- 290

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                      T       +D  D       S     + L   L    +   +   + L 
Sbjct: 291 -------AAGKTIQETVRNTDFHDFVLMAFRSESPVEEEL--VLSGKHERYFKVRGMTLR 341

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +AQ                AL   N+  +  K + ++  FV +VS+E+++P+T I GF +
Sbjct: 342 DAQAQRMG-----------ALVVLNDMTQVTKLENMRRDFVANVSHEIKTPITAIKGFVE 390

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLL 651
            L    L        +++E IS  +  L  +V D+L+L+ ++ AG  +L      + + L
Sbjct: 391 TLLDGALDD-KENAKRFLEIISRHTDRLKAIVEDLLELSRIEQAGGRELPLERASVKEAL 449

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
               Q    +    NI +++     L +   D   + Q    +L NA+ +S +   V + 
Sbjct: 450 ETAVQVCEARAISENITVEMDCPDDLTAVF-DPTMIEQAVVNLLDNAVKYSEEHGVVRVG 508

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
           A  + G+ +  V++ G  I E+    +F RF        R   G GLGL+IV+  +  HG
Sbjct: 509 AKAEGGEVLIWVEDEGPGISEEHLPRLFERFYRVDKARSRNLGGTGLGLAIVKHIMAAHG 568

Query: 770 GHVSISSSDEGVTTINCRI 788
           GHVS+ S           +
Sbjct: 569 GHVSVKSEKGKGAAFTLHL 587


>gi|126724717|ref|ZP_01740560.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium HTCC2150]
 gi|126705881|gb|EBA04971.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium HTCC2150]
          Length = 784

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 156/387 (40%), Gaps = 24/387 (6%)

Query: 419 LTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +  +   E    TL K Q          +  ++ V +   D RI+  N  F         
Sbjct: 238 ILERRQTEIANETLRKKQRHFRWLAAVAESANDSVIISNTDNRIEWVNDTFTKTTGYSFT 297

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                     +    +     S   D     I   +  R  +    +      +E SI P
Sbjct: 298 EAIGRIPGELLNGPETSKSANSKIID----AINKLEPVRTEIVNYTKSGQKIWVETSISP 353

Query: 533 LPNAQTMLTFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           + +    LT     +       + E  L        +A   K++F+  +S+E+R+P+  +
Sbjct: 354 IFDDTGELTMFVGIERDISLIKQREVDLALARSEAEQAAAAKSAFLATISHEIRTPMNGV 413

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG  DLL  SK   L+ +Q +  + I  S   LL+++NDILD + + +G ++L+   I +
Sbjct: 414 IGMADLLVKSK---LDEEQLELTKTIIESGESLLHIINDILDFSKLGSGKLELSPQAISV 470

Query: 648 NDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            D+++   +++       +I + + S    +G  + D  RL QI   ++ NA+ F+  G 
Sbjct: 471 PDVISRAIETLRAVARNKDIALSMTSVQSDIGFLLIDPVRLRQIVLNLVGNAIKFTDTGG 530

Query: 707 T---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIV 761
               V+++   +N +   ++ + G  IP D    +F  F         +  G GLGLSI 
Sbjct: 531 VTIDVLMQEVSNNVEVTINISDTGIGIPADALHRIFENFTQADGDTTRKYGGTGLGLSIS 590

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +      GG + ++S+    +    ++
Sbjct: 591 KRLAKQMGGDIVVTSTVGEGSCFQVKL 617


>gi|284046820|ref|YP_003397160.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283951041|gb|ADB53785.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 625

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 156/374 (41%), Gaps = 30/374 (8%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             VD          V    +D   + +A+   +G   + NP  R+               
Sbjct: 250 ELVDAVRSAREGASVLRAVLDATPDAIALLDREGAPIVDNPPMRA--------------- 294

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-SDSVLEYSIIPLPNAQTM 539
             + A         D       +  + D   +  +  + LL +         P+ +    
Sbjct: 295 --VRAAFGERATAIDHNGTLVPLDAATDGGGEEARDEITLLGTQRAFARYAAPVRDGHGR 352

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +        +   R +T + EA    + +K  F   VS+ELR+PLT I+G+ +L+     
Sbjct: 353 VIG-----RLLVLREVTGEREA----ERVKEEFFALVSHELRTPLTAILGYVELVLGEDG 403

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +++ +Q +Y++ +  ++  LL LV D+L  A V++G + L   ++ L  +  E  ++  
Sbjct: 404 ATIDEEQHRYLQIVERNAQRLLRLVGDLLFAAQVESGALLLEPGSVDLPRVTLEAVEAAR 463

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +  +  I +       +     DR RL Q+   ++SNA+ F+  G  V ++ +  +G+ 
Sbjct: 464 PRAEDAGITLTAQIAPLVPCV-GDRDRLAQVLDNLISNALKFTPSGGQVGVRLSAADGEA 522

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
              + + G  +P +    +F+RF   ++   R   GVGLGL IV + +  HGG + + S 
Sbjct: 523 RIDISDTGVGVPAEEHARLFDRFFRASNATTRAVPGVGLGLMIVRAIVAAHGGTIGVDSE 582

Query: 778 DEGVTTINCRIPSK 791
               TT   R+P +
Sbjct: 583 VGVGTTFTVRLPLR 596


>gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 949

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 125/247 (50%), Gaps = 12/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L  K E   +A  +K+ F+ ++S+E+R+P+  I+G   L++     SL+ K  +Y
Sbjct: 296 QAFEELRVKTEQALEASRMKSEFLANMSHEIRTPMNGILGVIRLMQNQ---SLDGKMRRY 352

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE + AS+  L++++ND+LD + ++AG     + +  L  ++ EV + +A++ HE  + +
Sbjct: 353 VETVDASANTLMSIINDVLDFSKLEAGKYVAQHVSFDLRLVIQEVAELMASQAHEKGLEL 412

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSV 723
               + ++ +  V D  R  Q+ + ++ NA+ F+ +G  V++ A+    D        +V
Sbjct: 413 VYRVERRVPTGVVGDPDRFRQVLTNLVGNAIKFTDRGE-VLIDASTSQQDKATALIKLAV 471

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I  D  K +F  F         +  G GLGL+I +  + + GG V + S+    
Sbjct: 472 VDTGPGIAPDDQKKLFAAFSQVDGSLVRKHGGTGLGLAISKRLVEVMGGEVGLDSTPGQG 531

Query: 782 TTINCRI 788
           +     I
Sbjct: 532 SRFWFTI 538


>gi|186473035|ref|YP_001860377.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184195367|gb|ACC73331.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1165

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 3/244 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L      L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q +Y 
Sbjct: 470 AQGELAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILARLLQENRTGNLTDEQVRYA 529

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I AS++ LL L+NDILDL+ V+AG + ++   + +  +L  +++         +++  
Sbjct: 530 ETIHASNSDLLVLINDILDLSKVEAGQITIDRELVAVESMLQSLREMFEPMAAAKHLQFS 589

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           V  + G       D QR+ QI   +LSNA+ F+ +G   +  AA D     F V++ G  
Sbjct: 590 VERAPGVPDMIFTDGQRITQILRNLLSNALKFTERGEVALTVAASDADTLRFDVRDTGIG 649

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D  + +F  F        R   G GLGLSI   F  L GG VS++S     +     
Sbjct: 650 IAADKLELIFEAFQQADGSTSRNYGGSGLGLSISREFARLLGGRVSVASEPGKGSVFTLW 709

Query: 788 IPSK 791
           +P +
Sbjct: 710 LPLQ 713


>gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
 gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
          Length = 676

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 161/375 (42%), Gaps = 23/375 (6%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L    G+ +   +    +F PD      +P    L     + L   T IR +        
Sbjct: 9   LNFKLGKYLTESNIAYIIFSPDYVPLFWSPEAERLLP---DYLIKNTKIR-LQDYLKTVL 64

Query: 492 NESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
            E D   L A I ++               L   + L++S     +    +T  ++T   
Sbjct: 65  LEEDYIRLSAFIKSNPKTAAFEAKFDKPSSLSDKTALKFSFTQQDDNNFFVTIDDITKQK 124

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             ER L    +   KA+ +++ F+ +VS+E+R+P+  IIG  +L+  +   +L+ +QS+Y
Sbjct: 125 LKERFLIIARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINET---NLDEEQSEY 181

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              ++ S+ +LL LVND+LD + +++G M +  +   L D + +    I+ + H+  + I
Sbjct: 182 TRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEI 241

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--------- 718
            V    K+  F+  D  RL Q+    + NA+ F+  G   V +K   +N           
Sbjct: 242 VVDISDKIPDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDPYAAKHF 301

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             +F V + G  +  +    +FN F     A   +  G GLGL+I ++ I +  G + I 
Sbjct: 302 FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIK 361

Query: 776 SSDEGVTTINCRIPS 790
            +    +    +IP 
Sbjct: 362 DNIPRGSVFWFKIPL 376


>gi|21232279|ref|NP_638196.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66767587|ref|YP_242349.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|188990703|ref|YP_001902713.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris
            str. B100]
 gi|21114044|gb|AAM42120.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66572919|gb|AAY48329.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|167732463|emb|CAP50657.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1186

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 110/695 (15%), Positives = 232/695 (33%), Gaps = 63/695 (9%)

Query: 137  EGQSFDLVAETQNDCAIKIEGRVS--GSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
            +G    L  +T +   I+   + +  G+      L        LA       +L      
Sbjct: 362  DGNGRLLRYDTSSGALIQTGIQAADLGTMQITTALEDSRGKLWLASGEYGLSRLDLRTGA 421

Query: 195  FKVLFDSLDF--LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
             +   D       +W  +     +W   +Y++  +   +   + +    +     + + +
Sbjct: 422  LEHFSDEGPAEAALWIGEPGDGTVW--AAYEQVIQQRDLATGRLLETIDQQHPHGLTEVV 479

Query: 253  ISSSALEKNFCETVSTL------EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
                    +    +S        +    +   +  +          ++ +  + +    +
Sbjct: 480  SPQIRKGPDGRMWLSAFGGMYAWQAATRRFVSVPGLKTDETLQAFVVEDATHLWLYRAGS 539

Query: 307  HTYEILHNLTVAIAIFDQNRYLQFH-NRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 L   +   A++ + R ++       ++ + ++   +             R   + 
Sbjct: 540  -----LERWSSDGAVWKRERRIRSAEGFPAMDAYGLERDGVG-RLWMSGPRGLWRIDPRT 593

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE---NL--- 419
            P+         +  +  +   +H+      NG    V+V     G T+ +     ++   
Sbjct: 594  PQARIRSFGVRDGLTSLE--FSHRCLMMARNG----VLVGGTADGYTVLIDTQAPDVPSF 647

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            T  + LET    L   +      +  G ++  PD R    N    S      NR      
Sbjct: 648  TPAMRLETVSVQLADRRRMLP--IRGGFSL-SPDDRQLRINMRLLSFVDPMANRYRTRLS 704

Query: 480  IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP------- 532
              +        ++ S   +  +     +  E + +           LE+ + P       
Sbjct: 705  GFDTGWVD---HDASGMREFSSLPPGDYVLEMQGIDPLGNASKVQTLEFIVNPPWWRSRF 761

Query: 533  ---------LPNAQTMLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRS 582
                     +     +         +RA+  L   K E   +A + K  F+  + +E+R+
Sbjct: 762  GIAVMVLVGMMLGVLLAAAYRRRVRMRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRT 821

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            P+T ++G ++LL  +    L+ +Q  Y   I ++   LL LVND LDLA ++AG + L+ 
Sbjct: 822  PMTGVLGMSELLLQT---PLDGRQQGYASAIQSAGKHLLRLVNDALDLARIEAGKLALDD 878

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
                L  L+ +V   +     +  +  +   D  L  +   D  R+ QI   +L NA+ F
Sbjct: 879  RDFDLRQLIRQVVDLVRPSAEQKQLAFECHLDESLPRALHGDANRVQQILLNLLFNAVKF 938

Query: 702  SSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA---HRGQRRGVGL 756
            + +G     +L      G     V + G  + E+    +F RF          +  G GL
Sbjct: 939  TERGQVRLRVLPLQAGGGGIRVEVSDTGPGMSEEQRGRLFQRFEQAEGGRTTTRHGGSGL 998

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GL+I        GG V +SS+          +P +
Sbjct: 999  GLAICRELAAAMGGSVGVSSALGQGACFVVELPLR 1033


>gi|170077312|ref|YP_001733950.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169884981|gb|ACA98694.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 774

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 7/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              +    L    E   KA++ K+ F+ ++S+ELR+PL+ I+GFT+LL  +   +L S Q
Sbjct: 365 QQAKLLETLQAAKEEAEKANQAKSQFLANMSHELRTPLSAILGFTELL--TGDTNLTSDQ 422

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I+ S+  LLNL+NDIL L+ ++AG   +      L + LN +   +     +  
Sbjct: 423 LESLDIITQSAQHLLNLINDILSLSKIEAGETSVLREAFNLVEALNVIYDFVVLAAKQKQ 482

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSV 723
           + +    D  +   +  D ++L Q+   +LSNA+ F+  G  V LK   D    +  F+V
Sbjct: 483 LELIFERDANVPEVIYLDEKKLKQVLINLLSNAIKFTEVG-RVTLKITYDAHQQNLHFAV 541

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  IPE     +F  F   +     R+G GLGL+I +  + L GG + +++++   +
Sbjct: 542 IDTGPGIPEHEQNKLFQVFQQTSTGIRSRQGTGLGLAISQQLVQLMGGEIRVTTAENQGS 601

Query: 783 TINCRI 788
                +
Sbjct: 602 CFWFEL 607


>gi|229108572|ref|ZP_04238184.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
 gi|228674827|gb|EEL30059.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
          Length = 896

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|189468425|ref|ZP_03017210.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
 gi|189436689|gb|EDV05674.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
          Length = 497

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/509 (19%), Positives = 208/509 (40%), Gaps = 29/509 (5%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+ +E+ + + +    ++     V+I + D    +   N+   +  + D   +   P  D
Sbjct: 4   DIPQEVRIVNAIA--EQLFDVWPVSIVMIDLEDRIWRMNKQMSDELQQDADIIG-KPVVD 60

Query: 354 ELLEFLRSANKLPEQL-NWKTWKENIFSVYKS---SETHKDTWHLPNGQTLHVIVTSNPR 409
            L       N LP  L +    +++I  +  +    E  +    L  G  L  I   N  
Sbjct: 61  MLEVVQDRENVLPRYLQDLHEGRQSIIHLSSNCFMLEPKRHISFLIQG-ALMGIYEENRL 119

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              +  + N+  +   +   N  +                +  +  + + +P +      
Sbjct: 120 VRIVLYYRNVLEESTRKHLLNIALSRTQIFQWS-------YDMERNLMIIDPRYFEYLGI 172

Query: 470 E-------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                       +   H  +  +       + DG    A +      +  S +   E  S
Sbjct: 173 PTRDYTLTPEEFAYLMHPDDRQSVFDALTLQLDGSLYEAPVEYRLRRDDGSWE-WFEAQS 231

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             V +    P       ++     D    E  L E     R++DE+K+ F+ ++S+E+R+
Sbjct: 232 TYVGQLKETPFRVVGICMSTQKYKD---TEERLNEALRKARRSDELKSIFLANMSHEIRT 288

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ LL   +         ++   I  +S +L+ L++DILDL+ +++  M+ ++
Sbjct: 289 PLNAIVGFSSLLAYGESDLTKEDIIEFTSLIEKNSRLLMVLISDILDLSKIESNTMEFSF 348

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            ++ L+ +LNE+  +    M E  + + +   G+  +   D  RL Q+ + +++NA+ F+
Sbjct: 349 CSVSLHRVLNEIGSAQRINMRE-GVELLLDLPGQEVTVYTDPARLSQVINNLVNNAIKFT 407

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           S+G+  I      +G     V++ G+ +  ++ + +F+RF        ++G GLGLSI +
Sbjct: 408 SEGNIRIGYRPAASGYVNIFVEDTGTGMSREVLEHIFDRFYKGDSF--KQGTGLGLSICK 465

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + +    G + ++S+    T     +P K
Sbjct: 466 TIVKRFEGKIEVTSTPGKGTCFTITLPLK 494


>gi|84390109|ref|ZP_00991371.1| sensor histidine kinase/response regulator [Vibrio splendidus
           12B01]
 gi|84376763|gb|EAP93638.1| sensor histidine kinase/response regulator [Vibrio splendidus
           12B01]
          Length = 937

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSTSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++NDILD + ++AG + L          L EV    AT  HE  + + + 
Sbjct: 332 IERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+    V L++  ++  +  F V++ G
Sbjct: 392 IDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|320661959|gb|EFX29367.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 778

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + D + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREDTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 DTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220]
 gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 126/660 (19%), Positives = 249/660 (37%), Gaps = 77/660 (11%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV----WHRDQAGDILWANIS 221
           L+ ++ + + +E    +L+ +     +  F+ LF   D  V    W R     + W    
Sbjct: 53  LKYIAENRLTAENGVMSLRARDDKTVVPNFEPLFADSDCSVMGNAW-RGSLESLAWFMRY 111

Query: 222 YKKNTETEGIVFQKAIGESRKLFKE--EIKKRMISSSALEKNFCETV-----STLEHGNN 274
           ++ N      + +  +  S  L      +++  +      K   E +     +  +  +N
Sbjct: 112 WRDNFSAAYDLNRVFLIGSDNLCMANFGLREMPVERDQALKALHERIIKYRNAPQDESDN 171

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH--------NLTVAIAIFDQNR 326
             + I +          A+           L    + +         +L + + I D+N 
Sbjct: 172 NLFWISQGPRPGVGYFYALTPVYLANRLQALLGVEQPIRMENFFTPGSLPMGVTILDENG 231

Query: 327 YLQFH------NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           +          N    + W  + ++    P   +L+        LP      +    ++S
Sbjct: 232 HALISVTGPEGNIKAEQRWMQERSWFGYTPGFRDLV----LKKNLP-----PSSLSIVYS 282

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLETKYNTLVK 434
           V       +    + N   L+V+V     G  ++M   +  +           +     +
Sbjct: 283 VPVDLVLERVRMMILNAILLNVLV-----GAALFMLTRMYERRIFIPAESDAQRLEEHEQ 337

Query: 435 VQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
              + +     G+ +    DG   LSN     L  T  N L+     R     C +  N 
Sbjct: 338 FNRKIVASAPVGICILRTLDGINILSN----ELAHTYLNMLTHEDRQRLTQIICGQQVN- 392

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                 F  ++TS +    +LQ +           +I            V+V+  V+ E 
Sbjct: 393 ------FVDVLTSNN---TNLQISFVHSRYRNENVAI---------CVLVDVSARVKMEE 434

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +L +      + V  +
Sbjct: 435 SLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPNG---VDRLVTAM 491

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + SS++LL +++DILD + +++  +K+        ++++ +  +    +    + +    
Sbjct: 492 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFI 551

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D  +  +   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++ G  IP 
Sbjct: 552 DPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVQCDGDYLSIRVRDTGVGIPA 610

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F+ F       +   +G GLGL+I E  I++  G +S+ S     +    RIP 
Sbjct: 611 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 670


>gi|261856648|ref|YP_003263931.1| multi-sensor hybrid histidine kinase [Halothiobacillus neapolitanus
            c2]
 gi|261837117|gb|ACX96884.1| multi-sensor hybrid histidine kinase [Halothiobacillus neapolitanus
            c2]
          Length = 1167

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 156/870 (17%), Positives = 293/870 (33%), Gaps = 159/870 (18%)

Query: 43   LLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIG-QLHQ 101
            +L +Q   +  ++N      +    ++ K   +   N     ++      PE+IG  +  
Sbjct: 174  VLQKQSARVGLELNAILQTAAIGIIRIDKRGVIEAANPKSLELF--GYTEPELIGRNVSM 231

Query: 102  RIDIPQTDTDLLSFENWLKFHHY--IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRV 159
             +  P           +L       I + +  +  RK+G  F              E R+
Sbjct: 232  LMPEPWRSAHDGYLMQFLATRDAKVIGIGRRVDGERKDGSRFPFNLAVS-------ELRI 284

Query: 160  SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
             G+  F+      G  S+++E       L    ++ + + DS    +   + A + +  N
Sbjct: 285  DGASQFV------GFVSDVSEQVEAEHALERERALLRSVIDSSSNPIAAVNAANEFILLN 338

Query: 220  ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS-----ALEKNFCETVSTLEHGNN 274
             S+ +         +  +G+  +LF      ++   +     A   +          G  
Sbjct: 339  TSFARLLA---KPVEAVLGQKSELFLPPQAIKINRETNARVWASGSSISTRTPIEIAGRM 395

Query: 275  KSYKIVRVLN------SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
            + ++  +           G   IA DVSK   +   L    + L +++     F Q+   
Sbjct: 396  RVFETNKSPLRDERGKQIGVVTIAQDVSKLDRITSDLMAMQQ-LRDMSE---RFGQSGS- 450

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE--QLNWKTWKENIFSVYKSSE 386
                      W +D      N S      F R     PE    + +   E +    ++  
Sbjct: 451  ----------WAMDPLTDRVNISAG----FARLLGLAPETTHADREIIYERVHPDDRAII 496

Query: 387  THKDTWHLPNGQTLHVIVTSNP-----------------RGGTIWMFENLTVQVDLETKY 429
                T  L  GQ++                           G +  F  +T  V  E + 
Sbjct: 497  DAAFTQTLSEGQSIRFEYRVRDAHGDWRYLRARGNAELAENGQVTQFVGITQDVTEEVRA 556

Query: 430  NTLVKVQGETIDHLS----------------------EGVAVFGPD----GRIKL----- 458
               +  Q + +  L+                      E +AV   +    G +       
Sbjct: 557  QEKMDAQQQLLSGLNKAVQSFLTTVAGDKNVWAQLLQELLAVTDAEFGFIGEVLYGIEST 616

Query: 459  ----------------SNPAFRSLWKTEENRLSPGTHIRNI-----------AATCSRYY 491
                            S+  F  +   +    +P   I  +            AT SR  
Sbjct: 617  PCLKIHAITNLSWSAESDALFERVMAGDMMFCNPDNLIGEVMKSRAPVIVPELATDSRRG 676

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLS-------DSVLEYSIIPLPNAQTMLTFVN 544
                G  L +  +         L G L + +       D V   +      A  +++   
Sbjct: 677  GFPPGHPLLSNYLGIPLFRGDELVGVLAVANRKAGVGHDLVDFLTPFTSSCAILIVSLRQ 736

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              + ++ E+AL E  +A  +A++ K+ F+  +S+ELR+PL  I+GF  L+  S+   L  
Sbjct: 737  QLERIKFEQALVESKQAADRANKAKSMFLSSMSHELRTPLNAILGFAQLMAASRREPLTE 796

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            KQ+ +V +I  +   LL L+ND+L+LA ++AG M L+  T+ L  +L +    +A     
Sbjct: 797  KQNGFVAHILKAGQHLLTLINDVLNLAKIEAGEMTLSPETLDLGVILRDALDMVADNAAS 856

Query: 665  NNIRIKVISD-----GKLGSFVADRQRLLQIFSKILSNAMDFSSK------------GST 707
              I +    +      +     AD  R  Q+   IL+NA+ ++              G +
Sbjct: 857  TGIALFNEFNGEHSSPEPLLICADLTRSRQVLLNILTNAIKYNRPRGSGGPYSPDNLGGS 916

Query: 708  VILK----AARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSI 760
            V ++       D G+++   ++++ G  IP      +F  F       G   G G+GL I
Sbjct: 917  VWVRRLPSYQNDAGNWMHGLAIEDTGMGIPAAQQHRLFRPFERLGQEAGTIEGTGIGLLI 976

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIPS 790
                I L  G +   S +   TT     P+
Sbjct: 977  TRQLIELMQGRIDFESEEGKGTTFFVWWPA 1006



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 54/190 (28%), Gaps = 28/190 (14%)

Query: 293 IDVSKEITVNDQLTHT----YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           +D  +   +  Q          IL    + I   D+   ++  N   +EL+      L  
Sbjct: 167 LDAERNTVLQKQSARVGLELNAILQTAAIGIIRIDKRGVIEAANPKSLELFGYTEPELIG 226

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-------HLPNGQTLH 401
                        +  +PE   W++  +     + ++   K             +G    
Sbjct: 227 RNV----------SMLMPEP--WRSAHDGYLMQFLATRDAKVIGIGRRVDGERKDGSRFP 274

Query: 402 V-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
                  +  +     +    +++ QV+ E        +    ID  S  +A        
Sbjct: 275 FNLAVSELRIDGASQFVGFVSDVSEQVEAEHALERERALLRSVIDSSSNPIAAVNAANEF 334

Query: 457 KLSNPAFRSL 466
            L N +F  L
Sbjct: 335 ILLNTSFARL 344



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 70/202 (34%), Gaps = 17/202 (8%)

Query: 422 QVDLETKYNTLVKVQGE--------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           Q  L+ + NT+++ Q           +   + G+      G I+ +NP    L+   E  
Sbjct: 164 QAKLDAERNTVLQKQSARVGLELNAILQTAAIGIIRIDKRGVIEAANPKSLELFGYTEPE 223

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L  G ++  +     R  ++       A          + + G  +  S      ++  L
Sbjct: 224 L-IGRNVSMLMPEPWRSAHDGYLMQFLATRDAKVIGIGRRVDGERKDGSRFPFNLAVSEL 282

Query: 534 PN---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ--HVSYELRSPLTNII 588
                +Q +    +V++ V AE AL  +   LR   +  ++ +   + + E    +    
Sbjct: 283 RIDGASQFVGFVSDVSEQVEAEHALERERALLRSVIDSSSNPIAAVNAANEF---ILLNT 339

Query: 589 GFTDLLKTSKLGSLNSKQSQYV 610
            F  LL       L  K   ++
Sbjct: 340 SFARLLAKPVEAVLGQKSELFL 361


>gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 919

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 34/274 (12%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                 E  L +  EA   A   K+ F+  VS+E+R+P+  IIG T L   ++   L  +
Sbjct: 158 MQRQAVEEELQQAKEAAEAASRAKSEFLASVSHEIRTPMNGIIGMTSLALQTE---LTQE 214

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +Y+E +  S+  LL+++ND+LD + ++AG +++       ++++ +  +++A + HE 
Sbjct: 215 QREYLEMVKISADALLSIINDVLDFSKIEAGKLEIEPVVFDPSEIIGDAVKTLALRAHEK 274

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------------- 710
            + +       +    V D  RL Q+   ++SNA+ F+  G  V+               
Sbjct: 275 RLELAYDVGPDVPEALVGDPLRLRQVLVNLVSNAVKFTDAGEVVVRAEVDSRAPLTPEEE 334

Query: 711 --------------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
                         +   D      SV + G  I  +  + VF+ F        R   G 
Sbjct: 335 ASADSQGTPSLYAGEVLGDAVVLRVSVIDTGIGIAPEKQRVVFDAFAQADGSTTRKYGGT 394

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL+I    + + GG + I S     +T +  +
Sbjct: 395 GLGLTICARLVEMMGGKIWIESEAGKGSTFHFTL 428


>gi|158334365|ref|YP_001515537.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158304606|gb|ABW26223.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 3073

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 116/645 (17%), Positives = 229/645 (35%), Gaps = 72/645 (11%)

Query: 172  DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
            DG+  ++ +       L      F+   +   F +    + G+IL  + ++ + T     
Sbjct: 2243 DGVVLDINDRKAAEANLRASEQRFRRAIEDAPFPIMIHAEDGEILQISSTWTELTGYTLA 2302

Query: 232  VFQKAIGESRKLFKEEIKKRMISSSALEKNFCET------VSTLEHGNNKSYKIVRVLNS 285
                    +++ +  +  + +    A + +              + G+   ++       
Sbjct: 2303 DIPTTTDWAQRAYGADAPRILKEVMAQKYSRTTRWDEGEFAIRKQDGDYCFWQFSSAPLG 2362

Query: 286  FGEAG------IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
                G      +A+DV++     + L                   N+ L+ ++++  +  
Sbjct: 2363 TLPDGRRLVVSMAVDVTQRRQAENDLEQ----------------ANQQLEEYSQTLKQ-- 2404

Query: 340  EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                          ++     +     EQ+      E   +            H      
Sbjct: 2405 --------------KVEARTIALQAAKEQVEKANEYEQALNRITKEIRQSLNLH------ 2444

Query: 400  LHVIVTSNPRGGTIWMFENLTV-QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
              +  T+      I   E +TV Q D E     + + + ++++ L     VF    R   
Sbjct: 2445 -DIFATTTQAVRPILGCERVTVYQFDAEWGGKFVFESKHDSLEPL-----VFSS--RQAE 2496

Query: 459  SNPAFRSLWKTEENRLSPGTHIRNIAA-TCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N +F    +      +    + +I+    S  + E        A +       K L G 
Sbjct: 2497 WNDSFLVNEEGNPCVFNTTYQVDDISEKELSPCHLEVLERFNIRAYLVVPIYVGKKLWGL 2556

Query: 518  LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQH 575
            L   + S               +         +AE   A+ E  E    A+E K+ F+ +
Sbjct: 2557 LAAYNHSQPRAWQPGEVRLFEQVCSHLGVALKQAELLSAMAESKEKADAANEAKSLFLAN 2616

Query: 576  VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            +S+ELR+PL  I+G+  +L+ S+  SL++K+ + V+ I    + LLNL+NDILD++ ++A
Sbjct: 2617 MSHELRTPLNGILGYAQILRRSE--SLSNKELEGVDTIYQCGSHLLNLINDILDISKIEA 2674

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKI 694
              ++L      L  LL  V +    K  +  I+       +L      D +RL Q+   +
Sbjct: 2675 LKLELTPKAANLPYLLQTVVEMCKVKADQKGIQFNYQPSSQLPQQVEVDDKRLQQVLLNL 2734

Query: 695  LSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRG 749
            L NA+ F+  GS   +      +       F V + G  I E     +F  F        
Sbjct: 2735 LGNAVKFTDHGSVTFIVDVSPLSEQQVSISFRVIDTGVGIAEQDLVKLFQSFKQVGDQHK 2794

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IPSKE 792
            Q  G GLGL+I +  + L G  + ++S  +  +  +    +P  E
Sbjct: 2795 QAEGTGLGLAISQRIVRLMGSEIHVTSQPQQGSEFSFTINLPLAE 2839



 Score = 81.5 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 160/484 (33%), Gaps = 69/484 (14%)

Query: 119  LKFHHYIKLSKATEKLRKEGQSFDLVAET--QNDCAIKIE---------GRVSGSCAFLR 167
            +       L      +R  GQ F   A+   Q+   I +E         G++  + A +R
Sbjct: 1691 IHPDSLYLLDDCLNAVR-NGQEFSCQAQNLHQDGTVIDVEVSAIPYPYRGKIH-ALAIVR 1748

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
             +      S+      +  +L   +++     ++ D  +    + G  ++ N S+     
Sbjct: 1749 DI------SDRKRLEKEQAQLYESLALKSSAIEASDAGIAIL-KDGHYIYLNASHLSLLG 1801

Query: 228  TEGIVFQKAIGE------SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV- 280
             E      A  E        + F ++I  ++       + F E  +  + G+    ++  
Sbjct: 1802 YEEHELMGASWEILYEPEEVERFSQQIFPQLAK---EGRWFGEATARRKDGSYFPQEVSL 1858

Query: 281  RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
              L       I  D+S+   +  +     +IL + +  I   D N  + + N ++ +L +
Sbjct: 1859 SALEDHKLICICRDISERKRLEAKQQRQLDILASTSDFIGTADPNGNILYLNEAWQQLLQ 1918

Query: 341  IDLAFLATNPSNDEL-----LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             +    A      E      LE +     LP       W        +++    D   +P
Sbjct: 1919 REQGEPAHRVQISEQHPAWALEIIVHE-ALPVAAQKGMW------CGETALLDGDGNEVP 1971

Query: 396  NGQTLHVIVTSNPRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
              Q   VI   +  GG  +   +  +++ +  LE +   L       ++   + + +   
Sbjct: 1972 VSQV--VIAHKSSNGGVKYFSTIVRDISERKQLEQEQARL----TAVLEATPDYIGIAST 2025

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
             G I   N   R+L    E         R+IA     + N+    +   A I     E  
Sbjct: 2026 TGEILWHNRQLRALRSDLEQHQDH----RSIADCHPDWVNQIIVEEALPAAI-----EYG 2076

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQ---------TMLTFVNVTDSVRAERALTEKNEALR 563
            S  G L LL  +  E  +  +  A                ++ D   AE+AL E     R
Sbjct: 2077 SWTGELALLEGNGDEIPVSQVIIAHKAADGTVENFSTIMRDMRDRRSAEQALAESQAQFR 2136

Query: 564  KADE 567
            +  E
Sbjct: 2137 RMTE 2140



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 58/414 (14%)

Query: 91   ETPEIIGQLHQRIDIPQTDTDL--LSF------ENWLKFHHYIKLSKATEKLRKEGQSFD 142
            E  E++GQ  + +  P     L  L+F        W                RK+G SF 
Sbjct: 1555 ERDELVGQSCEILYSPIELQRLHELAFPIVAKTGQWSGEATAT---------RKDGSSFP 1605

Query: 143  LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
            +         +  +G++           +    +   +   +  +      VF+ + D L
Sbjct: 1606 IDVSL----FLLEDGKL-----ICICRDISDRKAAEIQLRQQENQYRQ---VFESIVDGL 1653

Query: 203  DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI---KKRMISSSALE 259
            +       + G ++  N +Y +      +        S  +  + +      + +    +
Sbjct: 1654 NI---VDLETGQLVKVNPAYSQMMGYSSLEECLRAPISHNIHPDSLYLLDDCLNAVRNGQ 1710

Query: 260  KNFCETVSTLEHGNNKSYKIVRVL----NSFGEAGIAIDVSKEITVNDQLTHTYEIL--- 312
            +  C+  +  + G     ++  +            I  D+S    +  +    YE L   
Sbjct: 1711 EFSCQAQNLHQDGTVIDVEVSAIPYPYRGKIHALAIVRDISDRKRLEKEQAQLYESLALK 1770

Query: 313  ----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
                      IAI  ++ +  + N S + L   +   L       E+L       +  +Q
Sbjct: 1771 SSAIEASDAGIAIL-KDGHYIYLNASHLSLLGYEEHELMGASW--EILYEPEEVERFSQQ 1827

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            + +    +      +++   KD  + P      V +++      I +  +++ +  LE K
Sbjct: 1828 I-FPQLAKEGRWFGEATARRKDGSYFP----QEVSLSALEDHKLICICRDISERKRLEAK 1882

Query: 429  YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                 + Q + +   S+ +    P+G I   N A++ L + E+   +    I  
Sbjct: 1883 ----QQRQLDILASTSDFIGTADPNGNILYLNEAWQQLLQREQGEPAHRVQISE 1932



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 90/270 (33%), Gaps = 17/270 (6%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            +   + +       I+ +    +AI  ++    + N     L+  +   L       E+L
Sbjct: 1511 ENAKLYESAKLKSSIIESAIDGMAIL-EDGKYIYLNEVHATLFGYERDELVGQSC--EIL 1567

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
                   +L  +L +    +      +++ T KD    P    + V +     G  I + 
Sbjct: 1568 YSPIELQRL-HELAFPIVAKTGQWSGEATATRKDGSSFP----IDVSLFLLEDGKLICIC 1622

Query: 417  ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLS 475
             +++ +   E +         +  + + +G+ +   + G++   NPA+  +         
Sbjct: 1623 RDISDRKAAEIQLRQQENQYRQVFESIVDGLNIVDLETGQLVKVNPAYSQMMGYSSLEEC 1682

Query: 476  PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                I +     S Y  +     +      S   +     GT+       +E S IP P 
Sbjct: 1683 LRAPISHNIHPDSLYLLDDCLNAVRNGQEFSCQAQNLHQDGTVID-----VEVSAIPYPY 1737

Query: 536  AQTML---TFVNVTDSVRAERALTEKNEAL 562
               +       +++D  R E+   +  E+L
Sbjct: 1738 RGKIHALAIVRDISDRKRLEKEQAQLYESL 1767


>gi|117618284|ref|YP_856115.1| sensor protein LuxQ [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559691|gb|ABK36639.1| sensor protein LuxQ [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 657

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 130/274 (47%), Gaps = 12/274 (4%)

Query: 524 SVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             +E +  P  +A         T  +V + +R E+ L    +    A+  K+ F+  +++
Sbjct: 243 RWMEINAEPCFDAAGAFIGYRGTARDVGNQIRREQELARARDEAEAANRAKSQFLAMMTH 302

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+RSP+  ++G  DLL+ ++   L  +Q   + + + ++ +L  +++D+LD + +++  +
Sbjct: 303 EIRSPMNAVLGMLDLLQHAQ---LEPQQQTLLGHATHAARLLQTIIDDVLDFSKIESHTL 359

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
           + +  T+    L   + + +  +     I ++   D  + +    D  RL Q+ S +L N
Sbjct: 360 EFHCETLQPAQLCQSLIEPLLAQAGSKGIDLRWRVDDAVPAQLQGDPVRLSQVISNLLGN 419

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A+ F+S+GS V+L+ +        SV ++G  I  +    +F  F        RR  G G
Sbjct: 420 AVKFTSQGS-VLLQLSWHEQQLRVSVTDSGIGISAEDQALLFEPFSQVDSSATRRFSGTG 478

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGL+I +  + L GG + + S+    +     +P
Sbjct: 479 LGLAISKRLVELMGGSIQLRSAPGEGSCFWFDLP 512


>gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
          Length = 933

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|159027054|emb|CAO89239.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 733

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 136/307 (44%), Gaps = 12/307 (3%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE----- 552
           +L+  +I     E++      +     + E+  I +  AQ         D          
Sbjct: 291 ELWGLLIAHQCGEKRQWLPQEKKFLGQIGEHLAIAIYQAQLYSQVQEQKDIFECRVIERT 350

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS---LNSKQSQY 609
           + L +   A   A+  K+ F+ ++S+EL +PLT IIG +  L+     S      KQ  Y
Sbjct: 351 QELQDTLMAAEAANLCKSEFLNNMSHELLTPLTCIIGLSSTLQKCSAASNFLPPDKQKHY 410

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   LL L+ND+L+ + V AG   L+     L  L N V + I T+     I +
Sbjct: 411 LQVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEIIKTEAEIKEINL 470

Query: 670 KVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +      K   F AD  R+ QI   +L NA+ F+ +   + L+  ++    IF V++ G
Sbjct: 471 ILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAITLRLWKEGSQVIFQVEDTG 530

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +F +F       +RR  G+GLGL++ +  + LH G + + S  +  +   
Sbjct: 531 IGIPAQKIPLLFEKFTQLDGSRKRRYGGMGLGLALTKQLVELHRGTIEVESCLDKGSIFT 590

Query: 786 CRIPSKE 792
            R+P ++
Sbjct: 591 VRLPQQK 597


>gi|89109037|ref|AP_002817.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. W3110]
 gi|1736873|dbj|BAA16014.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K12 substr. W3110]
          Length = 807

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046]
 gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68]
 gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180]
 gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
          Length = 933

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|307721710|ref|YP_003892850.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979803|gb|ADN09838.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 1053

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 115/242 (47%), Gaps = 12/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  EA ++A E K+ F+ ++S+E+R+PL  I+GFT+LLK +    L  +Q ++VE I  
Sbjct: 376 KQDKEAAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDT---GLKEEQQEFVEIIEK 432

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL ++N+ILDL+ +++  +++        +         A +  E +I +    D 
Sbjct: 433 SSENLLEIINNILDLSKIESNKLEIEDVIFNPIEEFESAVDVYAVRASEKHIDLGCFIDP 492

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGS 728
           +L      D  ++ ++   +LSNA+ F+S    + +   +            F V+++G 
Sbjct: 493 ELEQPLKGDPTKIKEVVINLLSNAVKFTSSSGAINVDIRKLQSPQEGTTRVKFEVQDSGI 552

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  +    +F  F         +  G GLGL+I   FI L GG + + S     TT   
Sbjct: 553 GVTSEQKSRIFEAFSQADTSITRKYGGTGLGLTISARFIELMGGQLDLHSEPGEGTTFFF 612

Query: 787 RI 788
            +
Sbjct: 613 TL 614


>gi|228984656|ref|ZP_04144829.1| hypothetical protein bthur0001_13580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229155144|ref|ZP_04283256.1| hypothetical protein bcere0010_13370 [Bacillus cereus ATCC 4342]
 gi|228628271|gb|EEK84986.1| hypothetical protein bcere0010_13370 [Bacillus cereus ATCC 4342]
 gi|228775050|gb|EEM23443.1| hypothetical protein bthur0001_13580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 591

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSIV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|254470617|ref|ZP_05084021.1| autoinducer 2 sensor kinase/phosphatase LuxQ, putative
           [Pseudovibrio sp. JE062]
 gi|211960928|gb|EEA96124.1| autoinducer 2 sensor kinase/phosphatase LuxQ, putative
           [Pseudovibrio sp. JE062]
          Length = 794

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 165/388 (42%), Gaps = 29/388 (7%)

Query: 419 LTVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +  +  L   Y    ++  E       ++ LS+ + +   +G++   N A ++++   +N
Sbjct: 145 VAEERKLHEAYEENRRITNEKNKYLTILESLSDPIVLMDENGKVNDLNYAAQAVFCGLQN 204

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
             +   ++            +        +  T    +        ++ +  ++++S   
Sbjct: 205 --TKIKYVNEATRDVLTNQLQPYLPQELESCFTDVTLDTAVGPRVFDIRAQHIVDFS--- 259

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +L   +VTD         +  E    A+  K++F+  +S+E+R+PL  ++G  D
Sbjct: 260 RKFPGMILILNDVTDH-------KKAKEEAEAANSAKSTFLASMSHEIRTPLNGVLGLAD 312

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LLK +    L  +Q +Y++ I +SS +L +++ND+LD + V+AG ++L      +  ++ 
Sbjct: 313 LLKDT---GLKPEQHRYLDGIISSSEMLRSILNDVLDYSKVEAGSLELETVDFKIRQVIK 369

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-- 709
           +V      +  +  + + +     +   + AD  ++ Q+    +SNA+ F+++GS  I  
Sbjct: 370 QVVDLTRQQAEDKGLELLIDVHPHVPEILRADPTKIRQVLLNFVSNAIKFTNEGSITISV 429

Query: 710 ---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
              +   R        VK+ G  +PE     +F  FV       R   G GLGL+I +  
Sbjct: 430 HIPISQIRRARCLQIMVKDTGVGLPEGDHSYLFEPFVQQNAATNRLYGGTGLGLAISKRL 489

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           +N  GG +   ++       +  +P  E
Sbjct: 490 VNAMGGEIGCKANQTQGAVFHFTVPFYE 517


>gi|332998333|gb|EGK17932.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           VA-6]
          Length = 778

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|324018338|gb|EGB87557.1| PAS domain S-box [Escherichia coli MS 117-3]
          Length = 778

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|295703661|ref|YP_003596736.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294801320|gb|ADF38386.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 917

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 148/326 (45%), Gaps = 27/326 (8%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            IA         ++     +  + +  +E +     L ++++ + E         +T   
Sbjct: 427 EIARLLKESQAMTEELQAQSEELQTQSEELQMQSEELRMINEQLEE---------RTKDA 477

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +   A+  L EK   L    + K+ F+ ++S+ELR+PL +I+  +++L+ +   +
Sbjct: 478 EEKSFELEAAKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEMLEENAAKT 537

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+  + +Y   I +S   LL L+NDILDL+ V++G + +  + + +++L ++++++ +  
Sbjct: 538 LSEDEEEYARIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPDQIERNFSHV 597

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             +  +++K+     +   +  D +R  QI   +LSNA  F+  GS V +   R      
Sbjct: 598 AEQKKVQLKINKAQDVPDIIHTDEKRFQQIVKNLLSNAFKFTESGS-VTVSIQRVADHRL 656

Query: 719 ------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
                          +V + G  IP++  + +F  F         +  G GLGLSI   F
Sbjct: 657 TTAMRTIDTDCWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTGLGLSICSEF 716

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
             L GG +S+SS     +T    +PS
Sbjct: 717 AKLLGGWISLSSEVGKGSTFTLYLPS 742


>gi|239908609|ref|YP_002955351.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798476|dbj|BAH77465.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 655

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 170/420 (40%), Gaps = 33/420 (7%)

Query: 388 HKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            +  +   +G    V          +N R       +++T +   E        +    +
Sbjct: 105 QEFRFVRKDGGVRWVTERYRCEFDAANKRYVLYGAIKDITDRKKDEA-------LMRAML 157

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            +L          GR+ L +   ++LW              +  A       ++      
Sbjct: 158 ANLPLDFWARDLAGRVILQSDISQALWGDLTQACGDMDVSPDTLARWRANAAKAYAGHRV 217

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
            A      +    L G  E+    +L            M   V++TD  R E  L    E
Sbjct: 218 DA------EAEYRLPGGNEIFCHEMLAPIRSRGEIVGIMGVNVDLTDRRRMEHDLRAAKE 271

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
               A++ K+ F+ ++S+E+R+PL  I+    LL T+   SL+++Q + +     SS  L
Sbjct: 272 GAEAANQAKSEFLANMSHEVRTPLNGILSTLQLLGTT---SLDAEQQECLFAAIKSSHRL 328

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGS 679
             L++DILDL  ++AG +    S      L   V +  A    + ++ +   ISD     
Sbjct: 329 TQLLSDILDLTKIEAGKLPCRESRFEFGQLRRAVLELFAKAASDKDVGLVFTISDDMPRW 388

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPED 733
            V D  RL QI   ++ NA+ F+ +G  V ++A        D    +F V + G  IP+D
Sbjct: 389 LVGDEVRLRQILFNLVGNAVKFTLQG-QVTVEAKALPSAGGDRLHVLFVVSDTGIGIPDD 447

Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             + VF  F     ++  + +G GLGLSIV   + + GG +++  ++ G TT+ C IP K
Sbjct: 448 QLQYVFEPFSQIEGSYTRRFQGAGLGLSIVRKLVRMLGGELAVDGTEGGGTTMYCSIPLK 507


>gi|119489826|ref|ZP_01622581.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119454254|gb|EAW35405.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1666

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 142/782 (18%), Positives = 281/782 (35%), Gaps = 128/782 (16%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
            I +R     K+ E    L  I D +    +L+        +W           +  +   
Sbjct: 730  ITERKQTEIKLKEQKELLQSIFDNIPVMIALMDS--QRNFIWVNP--------EWEKVSG 779

Query: 105  IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA 164
                +T    F+ W       K  +   +            +T+    + ++ RV     
Sbjct: 780  YKFEETH--HFDVWGDAFPDPKYRQYIAE----------KLQTEPGSWVDVKVRVRDGKV 827

Query: 165  F--LRIL------SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
               + I        + GI  ++ +   + KKL       + + +++  ++   DQ G+I+
Sbjct: 828  TDQIWINIFLSDGKIMGIGQDITDRKREDKKLRESEERLRKVLENMTVMLDAFDQHGNII 887

Query: 217  WANISYKKNTETEGIVFQKAIGESRKLF----KEEIKKRMISSSALEKNF---CETVSTL 269
              N + ++ T   G    + I     L       E ++ MI+      +     E   T 
Sbjct: 888  VWNKACEQVT---GYTAAEMINNPEALVWLYPNSEYRQNMINHWQKRGDNYYDWEWNLTA 944

Query: 270  EHGNNK---SYKIVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
            + G+ K      +  V    G A  G+ IDV++     ++    YEI +         D 
Sbjct: 945  KDGSVKTISWTNVSDVYPVPGWATWGVGIDVTERKYQEEKQRLLYEI-NQAMTGAEDLDS 1003

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
               +     SF+    ID  F      + E       ++      N++ +          
Sbjct: 1004 ALEIAL---SFI-CESIDWDFAEAWIPDIEQQSLELCSHFYSNSFNFEDFF--------- 1050

Query: 385  SETHKDTWHLPNGQTLHVIVTSNP--------RGGTIWMFENLTVQVDLETKYNTLVKVQ 436
              + K  +    G    V +T  P        +  ++++ ++L   V LET     ++++
Sbjct: 1051 LGSIKTKFSPNEGVPGRVFMTQKPEWLTPISQQLDSVYLRKDLAKLVQLETALAIPIQLE 1110

Query: 437  GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
             + +      + VF            +   ++ +++ L     + ++    +        
Sbjct: 1111 TQVV-----AIFVF------------YCREFREQDHYLI--ELVCSLGEQLALTLQRRRI 1151

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                  +    ++  K+    LEL +                              +AL 
Sbjct: 1152 EQEVREVNQHLEERVKARTAALELTN------------------------------QALK 1181

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +       A+  K+ F+  +S+ELR+PL  I+G+T +L+  +  +L  +Q Q +E I   
Sbjct: 1182 QSKANADAANLAKSKFLAQMSHELRTPLNGILGYTQILQRDQ--TLTEQQQQSLEIIYKC 1239

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL+L+NDILDLA ++A  M L  +T+ L   L+E+   I  +     +     +D +
Sbjct: 1240 GNHLLDLINDILDLAKIEAQKMDLYPNTLKLKAFLDEIAVIIHPRATGKGLTWTYFTDPQ 1299

Query: 677  LGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNG---DFIFSVKNNG 727
            L +     D +RL QI   +LSNA+ F+  G  +    ++    ++       F VK+ G
Sbjct: 1300 LSNLFCLVDSKRLRQILLNLLSNAVKFTDTGEVILEVEVISPFTNSNPYVTLRFKVKDTG 1359

Query: 728  SSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
              IP +  +S+F  F        Q  G GLGL+I +  + + G  + + S     +    
Sbjct: 1360 IGIPSEKIESLFQPFEQGTEAYKQSEGTGLGLTITQKLLEMMGAKLEVESQYNQGSLFRF 1419

Query: 787  RI 788
             +
Sbjct: 1420 DL 1421



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 73/481 (15%), Positives = 150/481 (31%), Gaps = 51/481 (10%)

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG--SCAFLRILSLDG 173
           + WL   H        E+L     S +LV E      I+  G +    S AF      D 
Sbjct: 535 DAWLDAVHPDDREFLVEQLNPSLNSGELVVEY---RIIQSTGDIRWILSKAFPLYNEQDE 591

Query: 174 I------YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKK-- 224
           +       S++       ++LS      ++   S +  +W  D     + W    Y+   
Sbjct: 592 VYRTIEIASDITNRKQAEEQLSKLSERLQLALRSGNIGIWEWDIVNNILTWDQRMYELYG 651

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI----- 279
              ++     +A  +       E  + +   +   K    T   + H +   + +     
Sbjct: 652 VKPSDFEGVYQAWQQGLHPEDRERSEWICQQALQGKREYNTELRVVHPDGSIHYLKADAI 711

Query: 280 ---VRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN 332
                     G  GI  D+++    EI + +Q      I  N+ V IA+ D  R   + N
Sbjct: 712 VQRDEADEPIGVVGINYDITERKQTEIKLKEQKELLQSIFDNIPVMIALMDSQRNFIWVN 771

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
                 WE    +      + ++       +  P+   ++ +        +         
Sbjct: 772 PE----WEKVSGYKFEETHHFDVW-----GDAFPDPK-YRQYIAEKLQT-EPGSWVDVKV 820

Query: 393 HLPNGQTLHVIVTS--NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            + +G+    I  +     G  + + +++T +   + K     +   + +++++  +  F
Sbjct: 821 RVRDGKVTDQIWINIFLSDGKIMGIGQDITDRKREDKKLRESEERLRKVLENMTVMLDAF 880

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              G I + N A   +       +     I N  A    Y N     ++        D+ 
Sbjct: 881 DQHGNIIVWNKACEQVTGYTAAEM-----INNPEALVWLYPNSEYRQNMINHWQKRGDNY 935

Query: 511 RKSLQGTLELLSDSVLEYS------IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
               +  L     SV   S      + P+P   T    ++VT+    E       E  + 
Sbjct: 936 -YDWEWNLTAKDGSVKTISWTNVSDVYPVPGWATWGVGIDVTERKYQEEKQRLLYEINQA 994

Query: 565 A 565
            
Sbjct: 995 M 995


>gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BL21(DE3)]
 gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 933

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272]
          Length = 933

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|296161928|ref|ZP_06844728.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295887804|gb|EFG67622.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 996

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 146/381 (38%), Gaps = 28/381 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +   +      +    I+ +  G+A+   D    L   A                  + +
Sbjct: 365 ERSERVFDSEHLSRTLIETVPVGLALVNADNHTVLLESA------------HMQALEKRV 412

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQ---- 537
           AA               AA   S  D   +    L L S   S ++ +    P+      
Sbjct: 413 AAAGDVLIGGMLKQHAPAAFRASRGDAATTSDVELHLPSGEGSTIDIAAKLTPSFYEGQP 472

Query: 538 -TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    +VT   +  R LT    A   A+  K++F+  +S+E+R+PL  I+G  +LL+ 
Sbjct: 473 VIVAALSDVTAERQLARELTAARHAADSANAAKSAFLASMSHEIRTPLNAILGHLELLER 532

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  +     V  +++SS  LL ++NDILD + V+AG M          DL+ +   
Sbjct: 533 LPQA---APVVARVRTVASSSRALLQILNDILDFSKVEAGEMSFESIRFDAADLVRQATS 589

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
                     + +    D  L  +   D  R+ Q+   +LSNA+ F+ +GS  + + A +
Sbjct: 590 MFMPLAQRKGLALTHTIDAALPRYYLGDPGRIRQMVVNLLSNAIKFTDRGSVSIEVSAGK 649

Query: 715 DNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            N     +  V + G  IP      VF+ F        RR  G GLGL++ +      GG
Sbjct: 650 GNPAIPLVIRVTDTGIGIPAKRQARVFDAFDQIDASITRRFGGTGLGLALCKRIAEGMGG 709

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + +SS +   +     +P +
Sbjct: 710 TIEMSSEEGQGSIFTVTLPLR 730


>gi|307725772|ref|YP_003908985.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307586297|gb|ADN59694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 1198

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 149/333 (44%), Gaps = 12/333 (3%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A     + ++  +        +          ++G +     +       ++ Q  LE 
Sbjct: 390 EAALYRERLQDALIETQQLNEELQVQQEELRVSNEGLEERGRALLDTQTRLQAQQAELEQ 449

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            +  + EY+                 + +RA+  L    E L ++   K+ F+ ++S+EL
Sbjct: 450 TNVQLEEYA---------HRLERQKAELLRAQDDLAANAERLEQSSRYKSEFLANMSHEL 500

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL+ ++ G+L  +Q +Y E I AS++ LL L+NDILDL+ V+AG + +
Sbjct: 501 RTPLNSSLILAKLLQQNRTGNLTEEQVRYAETIHASNSDLLVLINDILDLSKVEAGQVSV 560

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAM 699
              T+ ++  L  +++         ++ +      G   + V+D QR+ QI   +LSNA+
Sbjct: 561 ELETVSIDATLQSLEELFKPMAGAKHLSLVFDRLPGAPETIVSDGQRVTQILRNLLSNAV 620

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            F+ +G   +  +  D+G     V+++G  I  D  + +F  F         Q  G GLG
Sbjct: 621 KFTERGEVALSVSPADDGMLRIDVRDSGIGIAADKLEMIFEAFQQADGSTSRQYGGSGLG 680

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LSI   F  L GG ++++S     +     +P 
Sbjct: 681 LSISREFARLLGGRITVASELGKGSVFTLWLPL 713


>gi|225418770|ref|ZP_03761959.1| hypothetical protein CLOSTASPAR_05994 [Clostridium asparagiforme
           DSM 15981]
 gi|225041704|gb|EEG51950.1| hypothetical protein CLOSTASPAR_05994 [Clostridium asparagiforme
           DSM 15981]
          Length = 1133

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 130/759 (17%), Positives = 257/759 (33%), Gaps = 84/759 (11%)

Query: 80  NCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ 139
           N   + + G +   E    +   I   +   D       L      K   A +   K+  
Sbjct: 174 NRHMLDYLGYENEAEFTADIGGMISNCRHPDDRAEVSRLLTAQLAEKDEYAVDYRMKKKD 233

Query: 140 SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199
              +         +  +GR + +   + I +      E+                    +
Sbjct: 234 GTYIWVHDLGRRTVAEDGRAAVASVCVDITAQKTAQDEVLHL-----------------Y 276

Query: 200 DSLDFLVWHR--DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           +++   V+    D+   ++ AN    +        F         +   E    M     
Sbjct: 277 NNIPGGVFRCRFDEDFSVIDANDGLFEFIGYSRDEFAAMGNRMSAVIYPEDLSVMAQKLK 336

Query: 258 LEKNFCETVS-----TLEHGNNKSYKI-----VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            +  +  T+        + G+ K   +                + +D++ E  + ++   
Sbjct: 337 EQLKYGNTIHNQNRLICKDGSVKWISVKAQLFTEQNGEQHFYCVLVDITDEKRLQERNNE 396

Query: 308 TYEILHNLTVAIAIFDQ--------NRYLQF-HNRSFVELWEIDLAFLATNPSNDELLEF 358
            YE        IA F +           +    NR    +   D+A      + ++ +E 
Sbjct: 397 LYE------QEIAYFAELSSRDGTFQGRINITGNRLESYISTADVAVGRVGDTYEQTVEN 450

Query: 359 LRSANKLPEQLNW---KTWKENIFSVYKSSET---HKDTWHLPNGQTLHVIVT----SNP 408
           L ++    E  ++      +E + + YK+               G             NP
Sbjct: 451 LAASAVDSEYGDFIRETLRREKVLADYKAGRVDYHFNFLRRRKVGTAFWSDTNFRSCLNP 510

Query: 409 RGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
             G I +F   +++T Q   E     + K+  + I  +    A +   G           
Sbjct: 511 ETGDIILFFYTQDVTEQRLQEQLLKKITKLDYDIITEIDISTAGYRLVGF-------SDE 563

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWD-LFAAIITSFDDERKSLQGTLELLSD- 523
              +          IR IA        + +  + L    +     ++ S    LEL+   
Sbjct: 564 WIPSVPMEGDFRQEIRRIAGLSMGEAAQKEFLEKLDFGYMKRQLRQQNSYTFILELMEKG 623

Query: 524 --SVLEYSIIPLPN--AQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQH 575
              +  + +  +     +  +T  +VTD VR E+     L     A  +A+  K+ F+  
Sbjct: 624 GPRIKRFQVFYINEELGRVCMTRADVTDVVRQEQKQKEELAAALVAAEQANAAKSDFLSR 683

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  IIG + +   S     + + +  +  I  SS  LL+L+NDILD++ +++
Sbjct: 684 MSHEIRTPMNAIIGMSTIAAQSIGD--DEQVADCISKIGISSRFLLSLINDILDMSRIES 741

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKI 694
           G M L    I   D L  +     ++     +  + I D  L   ++ D  +L Q+   I
Sbjct: 742 GKMLLKSERIPTEDFLGGINSICYSQAAVKGVEYECIVDPVLSDYYMGDAMKLQQVLINI 801

Query: 695 LSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           LSNA+ F+ +G  V   A        +    F V + G  + E+    +F  F   +   
Sbjct: 802 LSNAIKFTGEGGKVTFSAMERRKIKSDAILRFVVNDTGVGMNEEFLPHIFEPFSQESTGT 861

Query: 750 Q--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                G GLGL+I ++ +++  G +S+ S     T    
Sbjct: 862 TALYGGTGLGLAISKNIVDMMDGKISVRSIKGIGTEFTV 900


>gi|238483285|ref|XP_002372881.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
 gi|220700931|gb|EED57269.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
          Length = 2341

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+  +IG ++LLK +K   L+ +Q +YV
Sbjct: 1874 AEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKATK---LDKEQDEYV 1930

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1931 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETI 1990

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---DFIFSVK 724
               +      V   D  RL QIF  +LSN+  F+ KGS TV  +  R+         SV 
Sbjct: 1991 EDLEKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRARVTREGKGRIRLECSVS 2050

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F            G GLGLSI ++ I  + GG + + S+    
Sbjct: 2051 DTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVG 2110

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2111 TTVTFHL 2117


>gi|254480157|ref|ZP_05093405.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214039719|gb|EEB80378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 509

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYISASSTILLNLVNDIL 628
           F+ +VS+ELR+PL  IIG++++L           + Q+   ++ I  S   LL L+NDIL
Sbjct: 275 FLANVSHELRTPLNAIIGYSEMLHDELSDEREVDRPQFQQDLDKIIRSGRQLLTLINDIL 334

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ ++ G M L+  T    +LL +   SI  ++ E N +++      L +   D  +  
Sbjct: 335 DLSKIETGKMALHCETFQPGELLEQACDSITPQLRERNNQLEKPDFESLPTLYNDAAKFR 394

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           QIF+ +LSNA  F++ G   +L    +   G    +V++ G  + ED    VF  FV   
Sbjct: 395 QIFTNLLSNACKFTNAGYITVLATEPEEHPGWVEIAVRDTGIGMNEDQQSQVFEAFVQAD 454

Query: 747 HRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                   G GLGL+I   +  L GG + + S     +T    +PS
Sbjct: 455 ASTSANYGGTGLGLAICRDYCQLMGGTIRVESQPGNGSTFTVLLPS 500


>gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
           10329]
          Length = 932

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  V ++     GD     F V++ G
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|296501720|ref|YP_003663420.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296322772|gb|ADH05700.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 896

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|257094403|ref|YP_003168044.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046927|gb|ACV36115.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 884

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 123/252 (48%), Gaps = 12/252 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L E  +A   A+  K+ F+ ++S+E+R+PL  I+G  ++L+ +    LN++Q++Y
Sbjct: 344 RRNSDLAEAKDAAEAANTAKSQFLSNMSHEIRTPLNGILGMAEVLERT---PLNNEQARY 400

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  IS++   L  L+ DILDLA ++AG + L      L  LL ++ ++       +   +
Sbjct: 401 LRAISSAGQALHGLLGDILDLAKIEAGKIVLEDIDFDLESLLVQLAETFRELASASGKSL 460

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDF--IFS 722
                G        D  RL Q+ S +L+NA+ F+ +G      V L +  ++      FS
Sbjct: 461 TADFVGVARLCLRGDPTRLRQLLSNLLTNAVKFTERGGITLNVVRLASRPEDARVWLRFS 520

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  +    +F  FV       RR  G GLGL I +  + L GG +S+ S+   
Sbjct: 521 VRDTGIGIAPEAAARLFQPFVQADQSTTRRFGGSGLGLVICKQLVELMGGSISVDSTVNQ 580

Query: 781 VTTINCRIPSKE 792
            +T    +P  E
Sbjct: 581 GSTFTAELPFAE 592


>gi|302749930|gb|ADL64107.1| multi-sensor signal transduction histidine kinase, WalK
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 608

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 156/403 (38%), Gaps = 31/403 (7%)

Query: 395 PNGQTLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGP 452
            +  T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+     
Sbjct: 222 KDNYTQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDR 281

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            GRI++ N     +    +  +     +  +  +    +   +  +   + +   ++E  
Sbjct: 282 RGRIRIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEG 339

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +           + +S I             + D    ++            +  +  F
Sbjct: 340 LIAR---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREF 379

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           V +VS+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ 
Sbjct: 380 VANVSHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +D    ++N   I  N  +N++      +M   +         K      D  ++ Q+F 
Sbjct: 439 MDNESDQINKEIIDFNMFINKIIN--RHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFD 496

Query: 693 KILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            +++NAM +S     V     ++         +K+NG  IP +    +F+RF        
Sbjct: 497 NVITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKART 556

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           R   G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 557 RKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 37.6 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +           D +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGM--------AKEDII 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++   +  +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|127514716|ref|YP_001095913.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126640011|gb|ABO25654.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1042

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 162/392 (41%), Gaps = 27/392 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ +   + +     +      + +   +A      R +  N  +       E  +    
Sbjct: 245 VSARNQKQLELQKSRRYIDNITNVIPIQLAYVDAQSRYRFINQHYLQWLGKTEEDVLD-Q 303

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---------SDSVLEYS 529
            +  +         +     + A     F+ E                     D  +E  
Sbjct: 304 TVEAVQPADVYQLIKPYQQGVLAGNKQVFEAETIDADQAPRFFHITYVPDVGDDGQVEGY 363

Query: 530 IIPLPNAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            I + +   M       ++   E      AL+E  E    A + K  F+  +S+E+R+P+
Sbjct: 364 FICVEDLTRMKLNERKIETYAQEMEFSNWALSEAREKAEVAAKTKEDFLACMSHEIRTPM 423

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             +IG   LL  ++   L+  Q +YV+  SAS+  LL+L+NDILD + +++G  ++    
Sbjct: 424 NGVIGILGLLGETQ---LSPMQKRYVDVASASADSLLSLLNDILDFSKIESGKFEIEAIE 480

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             L +LL+   QS++ K+ E ++ + V I+  +    V D  RL QI   ++ NA+ F+ 
Sbjct: 481 FDLVELLDLFVQSVSLKLEERHLPLFVDITQLQYRYVVGDPSRLRQILVNLVGNAIKFTE 540

Query: 704 KGSTVILKAA---RDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           +G  + L+ +    ++G+ + S  V++ G  I ++    +FN F+       R   G GL
Sbjct: 541 EG-WIALRLSNRLSESGEVLLSCEVEDTGIGIAKEKLAMLFNPFIQVDSSTTRMFGGTGL 599

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI +    L  G + + S  E  +  +  +
Sbjct: 600 GLSIAKRLCELMQGEIKVRSQQEVGSIFSFTL 631


>gi|329890191|ref|ZP_08268534.1| mmoS [Brevundimonas diminuta ATCC 11568]
 gi|328845492|gb|EGF95056.1| mmoS [Brevundimonas diminuta ATCC 11568]
          Length = 541

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/356 (23%), Positives = 157/356 (44%), Gaps = 19/356 (5%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           VA+    GRI   N  F ++       L   TH        +   +  D +      I  
Sbjct: 33  VAITDRAGRILYCNDKFEAVSGYSREELIGQTH-----RVVNSGVHPRDYFRNLYRTIAG 87

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEA 561
            +  R ++Q   +      ++ +I+P   +             V+D VRA +AL      
Sbjct: 88  GEVWRGTIQNRTKSGEPYWVDTTIVPNLGSDGRPETYTAIRFEVSDHVRALKALELAQAE 147

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            R+A E+++ F  ++S+E+R+PL  ++G    L  +   +L S+Q++ ++ I+ +   L 
Sbjct: 148 ARQAAEVRDRFFANISHEVRTPLNAVLGLASALAHT---TLTSRQTEMLKLITGAGDALR 204

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSF 680
            +++D+LDL+ + AG   L+ +   L   +  V +       +  + + V  +    G  
Sbjct: 205 RVLDDMLDLSKMQAGQFSLSLTPFDLRTDIEAVVEMRRAVAEDKGLTLDVAFAPSAQGQV 264

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           + D  R+ QI S ++SNA+ F+++G     V ++A  +    I  V++ G     +  + 
Sbjct: 265 IGDGVRITQIVSNLVSNAVKFTAEGRVSVRVDVRAEDNREHLIIEVEDTGMGFDAEAARR 324

Query: 738 VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F+ FV        Q  G GLGLSI +S   L GG ++  S+    +     +P +
Sbjct: 325 LFDPFVQADDAISRQFGGTGLGLSICKSLAELMGGEIAAESALGEGSLFRVALPVE 380


>gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 932

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  V ++     GD     F V++ G
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|297583656|ref|YP_003699436.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297142113|gb|ADH98870.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 597

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 154/366 (42%), Gaps = 22/366 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + +   Y +  +     I+++  G+ +    G I L N +  ++++ +  +     + + 
Sbjct: 233 MQITRTYESQQERLETLIENMGSGLILINDTGDILLVNHSCDAIFQEDTAKWPGSLYYQV 292

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           I                   +     +ERK  Q +L     S +      +  A  + + 
Sbjct: 293 I--------KNKKINTFIQKVF--LTEERKRRQISLA----SGIYMHHYDVHGAPIIASD 338

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++   V     +      L+K ++ +  FV +VS+EL++P+T++ GFT+ L    +   
Sbjct: 339 GDLKGIV----LVFHDITELKKLEKARKDFVANVSHELKTPVTSLKGFTETLLEGAVND- 393

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  + +++  I+  S  L  L+ ++L+L+ ++     LN+ T+ +  L++EV   +  K 
Sbjct: 394 DELRMKFLRIIANESDRLETLIFELLELSRIEGEAFSLNWQTVDIEPLIDEVFDMLGEKA 453

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               + I+    G       +  R+ QI   +++NA+ ++ +G T+ ++        +  
Sbjct: 454 SAKQMTIEKKISGS-PILAGEGARIKQILINLINNAIVYTHEGGTITVRVKEQAEQVVLE 512

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  + +     +F RF        R   G GLGL+IV+     H   +S+ S    
Sbjct: 513 VEDTGIGLSKKEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLAEAHRAKLSVDSEPGK 572

Query: 781 VTTINC 786
            TT   
Sbjct: 573 GTTFRI 578


>gi|186475908|ref|YP_001857378.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           phymatum STM815]
 gi|184192367|gb|ACC70332.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           phymatum STM815]
          Length = 502

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/489 (19%), Positives = 193/489 (39%), Gaps = 18/489 (3%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                +++     A+ + D+   +   N    +L+      L  N  +  + E +R A+ 
Sbjct: 12  HELFRQVVEAAPNAMVMADREGLVVLVNVQAEKLFGYPRNELVGNSVDMLVPERMRRAHP 71

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
              ++ +   +       +     +      +G  + V +  NP   T  +F  L   VD
Sbjct: 72  EFRRMFYGDPRSRPMGTGRDLFALR-----KDGTEVPVEIGLNPVTTTEGIF-VLAAIVD 125

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           +  +     + +   ++     + + G DG+I L N    +L+     +L  G  I  + 
Sbjct: 126 ITERRRLEERFRQ-VVEAAPNAMVMVGQDGKIVLVNAQTENLFGYNREQL-FGKSIETLV 183

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLT 541
               R  +E         +        + L G     S+  +E  + P+  +     +  
Sbjct: 184 PERFRRGHEVSRNAYLHDLKPRPMGTGRDLYGRRRDGSEFPVEIGLNPVRTSNENFVLAA 243

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++T+  RAE  L  + E L ++++    F    S++L+ PL  + G   LL+    G 
Sbjct: 244 IVDITERKRAEHELMRRTEELARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQ 303

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++  +++ +    +T +  L++D+L  + V  G              L++  +S++  
Sbjct: 304 LDARAEEFITHAVDGATRMQKLIDDLLSYSRV--GRSGAVQQLTACAAALDQALKSLSVV 361

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDF 719
           + E+  +I   +   L   +A   +L  +F  ++ NA+ F      V +   A R+   +
Sbjct: 362 LQESGAQITRDA---LPCVMAIPTQLALLFQNLVGNAVKFRQVDRPVRVDIGARREGDSW 418

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           + SVK+NG  I       +F  F     R    G G+GL++ +  +  HGG + I S   
Sbjct: 419 VISVKDNGIGIDPQYFDRIFMIFQRLHSRADYPGTGIGLALCKRIVEQHGGSIWIESQPG 478

Query: 780 GVTTINCRI 788
             TT+   +
Sbjct: 479 AGTTVFFTL 487



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/263 (11%), Positives = 77/263 (29%), Gaps = 24/263 (9%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
            +F+ + ++    +   D+ G ++  N    +  +  G    + +G S  +   E + R 
Sbjct: 13  ELFRQVVEAAPNAMVMADREGLVVLVN---VQAEKLFGYPRNELVGNSVDMLVPE-RMRR 68

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFG-----------EAGIAIDVSK 297
                    + +  S         + +      V    G                +D+++
Sbjct: 69  AHPEFRRMFYGDPRSRPMGTGRDLFALRKDGTEVPVEIGLNPVTTTEGIFVLAAIVDITE 128

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
              +        +++     A+ +  Q+  +   N     L+  +   L        + E
Sbjct: 129 RRRLE---ERFRQVVEAAPNAMVMVGQDGKIVLVNAQTENLFGYNREQLFGKSIETLVPE 185

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSS-ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             R  +++         K       +      +D    P    L+ + TSN     +   
Sbjct: 186 RFRRGHEVSRNAYLHDLKPRPMGTGRDLYGRRRDGSEFPVEIGLNPVRTSN-ENFVLAAI 244

Query: 417 ENLTVQVDLETKYNTLVKVQGET 439
            ++T +   E +     +    +
Sbjct: 245 VDITERKRAEHELMRRTEELARS 267


>gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407]
          Length = 933

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70]
 gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218]
          Length = 949

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPCVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTVMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
 gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
          Length = 894

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/447 (21%), Positives = 176/447 (39%), Gaps = 34/447 (7%)

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           +  +L  + +++ WK+ +    +             G+ L V    NP G  +   E ++
Sbjct: 458 AKGRLSPRKSFELWKQQLRGHTRPWRRADIRLIADVGRLLTVDQAGNPDG-MVREIERVS 516

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVF-----GPDGRIKLSNPAFRSLWKTEENRLS 475
            ++  E +         E +D L +G+ +        + ++   N  FR ++    ++  
Sbjct: 517 RRLGGEKQVR------REILDVLLDGIVLVASIRDDNEMKVHAVNRLFRDVFGISGDK-R 569

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               +     T           +L     T F   R+               +    + N
Sbjct: 570 LPHRLETFLETF------GLPPELADPAFTDFPMTREVWS---SRRGRRWFSFDRRTVFN 620

Query: 536 AQT--------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           AQ         ++   +VT   +AE AL    +    A E +  F+   S+ELR+PL  I
Sbjct: 621 AQGESGGTKLALICLYDVTAYKQAEEALMAARQQAISAMEQQRKFIAAASHELRTPLNAI 680

Query: 588 IGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IGF+++++    G + +++  +Y   I  +   LL+L+NDIL L  +  G      + + 
Sbjct: 681 IGFSEMIQMQTFGPVGDTRYQEYATDILNAGRHLLDLINDILTLGRMQPGAAAAADAPVC 740

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           LND + +  + +  +    +I +             + + + QI   +LSNA+ F+  G 
Sbjct: 741 LNDEIRQALRMVEDQARARSIAVVWEEPPYRILLDMEARAVRQILLNLLSNAVKFTPPGG 800

Query: 707 TVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
            V +     D  D    + + G  I E   + VF  F    +       G GLGLSIV +
Sbjct: 801 QVSVVLGGHDGEDLWLEISDTGIGIAEADMEHVFEPFFRAGNVYTRSTEGTGLGLSIVRA 860

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            +  HGG VS+ S     TT+   +PS
Sbjct: 861 LMEAHGGRVSLRSRYGQGTTLRITLPS 887



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 51/442 (11%), Positives = 123/442 (27%), Gaps = 49/442 (11%)

Query: 12  KGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNS-----LAKKVNETYSFLSEIC 66
             + +    +  + V G + G++         L   R                +    + 
Sbjct: 258 ANMGVTASLTLSVIVDGALWGLIACHHTQPFWLDPDRQQRICRVADALARSIRTATRRLD 317

Query: 67  DQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK 126
            Q ++  +         +    +  +P     L ++  +   D D ++            
Sbjct: 318 AQATRQAARQFARLQRVV---ARSRSPLEDIILSRQGLLNAIDADGVALVAGRSVLSTGA 374

Query: 127 LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
           + +A + LR+    F  +   +   A  +                + +  ++ +      
Sbjct: 375 VPEA-DWLRQ----FARILADRAGEASFVS---------------ECLGRDVPDLPAPGP 414

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWA-NISYKKNTETEGIVFQKAIGESRKLFK 245
             S  I+        +    +  +  G + W  N    K  E +    + +  +S +L+K
Sbjct: 415 AASGCIAQLIDPAGPVVIAAFAGEVGGTVNWGGNP--DKPVEWDPAKGRLSPRKSFELWK 472

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
           ++++          + +      L     +   + +  N  G       VS+ +    Q+
Sbjct: 473 QQLR-------GHTRPWRRADIRLIADVGRLLTVDQAGNPDGMVREIERVSRRLGGEKQV 525

Query: 306 THTYEILHNLTVAIAIF-----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
               EIL  L   I +      D    +   NR F +++ I             L  FL 
Sbjct: 526 RR--EILDVLLDGIVLVASIRDDNEMKVHAVNRLFRDVFGIS----GDKRLPHRLETFLE 579

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           +    PE  +       +     SS   +  +        +    S      +    ++T
Sbjct: 580 TFGLPPELADPAFTDFPMTREVWSSRRGRRWFSFDRRTVFNAQGESGGTKLALICLYDVT 639

Query: 421 VQVDLETKYNTLVKVQGETIDH 442
                E       +     ++ 
Sbjct: 640 AYKQAEEALMAARQQAISAMEQ 661


>gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
 gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
          Length = 949

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSVESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANWLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|150007327|ref|YP_001302070.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935751|gb|ABR42448.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 771

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 133/249 (53%), Gaps = 5/249 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +N+      E +L        ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +  
Sbjct: 516 CLNIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPL 574

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +++++++ I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    
Sbjct: 575 EPEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLM 634

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
           M E  + +K+    +     +D  RL Q+ +  ++NA+ F++KG   +  + + D    +
Sbjct: 635 MPE-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 693

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SVK+ G  IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S    
Sbjct: 694 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLESEVGV 751

Query: 781 VTTINCRIP 789
            +     +P
Sbjct: 752 GSMFTISLP 760


>gi|167621903|ref|YP_001676688.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167351644|gb|ABZ74374.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 579

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 121/264 (45%), Gaps = 6/264 (2%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I+    A   +      + +     L  + EA   A + K+SF+  +S+ELR+P+  ++G
Sbjct: 172 IVEQNRANARILRGAQAELLEQREVLRAQTEAANAASQAKSSFLAMMSHELRTPMNGVLG 231

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               L    L  L+S Q  +++ +  S   L+ ++ND+LD++ ++AG ++L      L++
Sbjct: 232 MAHAL---TLSKLDSHQVSHLDMLLRSGQGLMTILNDLLDISKIEAGKLELEIIPFDLSE 288

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           L  +V+       H   + +          +V  D  RL Q+   ++SNA+ F+S+G   
Sbjct: 289 LGRQVEDLWRDAAHIKGVSLVCEVAFSGPHWVSGDPTRLRQVLINLVSNALKFTSQGEVR 348

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
           +     ++G    +V + G  IP +    +F  F        R   G GLGL+I +  ++
Sbjct: 349 LSIWRSEDGLCQIAVTDTGPGIPVNQQALLFQAFSQADASITRKFGGTGLGLAICKQLVS 408

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           L  G + + S +   +T    +P 
Sbjct: 409 LMDGRIDLDSREGVGSTFTVSLPL 432


>gi|312891848|ref|ZP_07751354.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311295682|gb|EFQ72845.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 870

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 121/713 (16%), Positives = 263/713 (36%), Gaps = 73/713 (10%)

Query: 119 LKFHHYIKLSKATEKL--RKEGQSFDLVAETQND-----CAIKIEGRV--SGSCAFLRIL 169
           +       + +A  K      G ++D+   T          +  +G+   +   A+ R  
Sbjct: 189 IHPADKHMVRQAINKALNPASGSAYDIRYRTVAKLDGALRWVHCKGKAYFNNGTAY-RFA 247

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN---T 226
            +    +    T+ + ++L   +                 D  G++++ N + K+    T
Sbjct: 248 GIARDITAEVRTSQRERQLLTLVEDNASHMT-------IADMEGNLIYMNNAAKRLIGVT 300

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKI 279
           +TE I    A         + ++ ++I     +  +   ++       +          I
Sbjct: 301 DTEDITRLAAKDFYSAEELDRVQNQIIRQITEKDGWRGNITLTNKITREEIPCEVSYMLI 360

Query: 280 VRVLNSF--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF-DQNRYLQFHNRSFV 336
               +    G   IA D+  EI    +L     I+  ++     + D      + N + +
Sbjct: 361 HDPESGEVIGRGAIARDLRPEIKAKTELKRLATIVD-ISEDFCNYCDLEGKTLYMNAAGL 419

Query: 337 ELWEIDLAFLATNPS---NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS----ETHK 389
            L       +A +     + +    L     +P+ L+   W  ++  V++ +      +K
Sbjct: 420 TLIGFGEQEVAGSNMFAYHSQNSSRLIRKEIMPQLLSEGRWSGSLELVHQQTGEVIPIYK 479

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI-------DH 442
             + + +        T+ P      +  +L  +++   K +    +    +       D 
Sbjct: 480 QLFIIRD------EFTNIP-VAFAGIARDLRPELEFRRKLDDKNTILQNAVKELEFLADS 532

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           +   V    PDG +   N  +     T  EN L  G H    A          + W+   
Sbjct: 533 VPSVVWTSKPDGHLDYINKRWYEHGATSIENSLGEGWH---HALHPDDEQAARNAWNHSL 589

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
              T +  E +      +           +PL N    +     T++   E+        
Sbjct: 590 QTGTPYQIEFRIRDKKDQY---RWWLVRALPLKNDDGKIVKWYGTNTDITEQK------- 639

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +  + K++F+   S+EL++P+T+I  +  +++T    S +SK ++ V  +      L 
Sbjct: 640 --ELQQQKDNFLGIASHELKTPITSIKAYAQVMQTLFTRSGDSKNAELVGKMDRQLNRLN 697

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +LV D+LD+  ++ G ++ NY T   N+++ EV + +      + I+  +    +L    
Sbjct: 698 SLVADLLDVTKINTGRLQFNYETFDFNEMVEEVIEDVQRTTSRHLIKKALAFKKELT--- 754

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R+ Q+ + +L+NA+ +S + + +I+       +    V++ G  I  D    VF +
Sbjct: 755 GDRDRISQVVTNLLTNAIKYSPQANEIIIYTEEHETEAKLCVQDFGIGISLDKKDRVFEQ 814

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F   +   +    G+GLGL I    I   GG + ++S +   +T    +P K+
Sbjct: 815 FYRVSGTREYTFPGLGLGLYISSEIIKRLGGRIWVTSVENKGSTFCFSLPIKQ 867



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 31/210 (14%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIF-DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
              +QL    E      +  AI+   +  +   N+  ++LW+ D + +         +  
Sbjct: 6   AAQEQLKALVEA---SPIPTAIYTGTDIIISMANQPMLDLWDKDNSVIG--------MPI 54

Query: 359 LRSANKLPEQLNWKTWKE--NIFSVYKSSETHKDTWHLPNGQTLH------VIVTSNPRG 410
             +  +L +Q  +   K        Y++ E+  D  H  NG+ +               G
Sbjct: 55  AEALPELEQQPFFDLLKHVYQSGETYQTKESKADLLH--NGKMIPFYFDFTYKAIPGSDG 112

Query: 411 GTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            T ++F    ++T QV+   K     +    ++     G   +  D    + N   R   
Sbjct: 113 QTAYIFHTAVDITKQVEARHKLAETEEWLTLSLSSADIG--TWDLD----VVNDTVRWDE 166

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +  E     G  +       S  +      
Sbjct: 167 RCRELFGILGAEVTTYEEALSCIHPADKHM 196


>gi|302344896|ref|YP_003813249.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
 gi|302149775|gb|ADK96037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
          Length = 878

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 5/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +  K      A++ K  F  ++S+ELR+PLT I    + +      +LNS+Q   ++ 
Sbjct: 358 RTILMKRRIEEDANKAKLQFFTNISHELRTPLTLIADPVNYIMHD--DNLNSQQRSMLQI 415

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +  +L  LV++ILD   V  G M+L  S   L++ + +     +    + +I I + 
Sbjct: 416 VQRNVLVLTQLVSEILDFRKVQNGKMELRLSDFNLSESMKQWIMLFSASAQKKHIAISMN 475

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   +    AD+ ++ +I   +LSNA+ ++S+G  + L A  +NG  + SV +NG  I  
Sbjct: 476 APDAV-MLRADQDKIERICYNLLSNALKYTSEGGEITLTAKEENGRVMISVADNGCGISS 534

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           D    +F+RF    + G  RG G+GL+IV++F  LH G VS +S +   +T    IP ++
Sbjct: 535 DELPYIFDRFYQAKNAG--RGTGIGLAIVKAFTELHHGEVSATSVEGKGSTFTIHIPVRQ 592


>gi|153872278|ref|ZP_02001216.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152071255|gb|EDN68783.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 623

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 132/295 (44%), Gaps = 15/295 (5%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           E + ++ T E+      E  +    +   +L         +    L    +    A++ K
Sbjct: 290 ELQIMERTAEIERRKQAEEELKQHRDHLELLVSERTQRLEQQTIELISAKKVAETANQSK 349

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+ELR+P+  I+GF+ L++  +  ++ S Q   +  I  S   LL+L+ND+LD
Sbjct: 350 SLFLANMSHELRTPMNAILGFSQLMERDQ--AITSTQQNNLRIIQRSGEHLLSLINDVLD 407

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           ++ +++G M L   +  L   L ++   I  +    N+      D KL  ++  D  +L 
Sbjct: 408 MSKIESGRMTLETESCDLPQTLKDIADMIHIRAKNKNLLFTWEYDPKLAHYIKTDVGKLR 467

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARD-----------NGDFIFSVKNNGSSIPEDMCKS 737
           QI   +L NA+ ++ +G   +   +++                  V+++G+ I  +    
Sbjct: 468 QILINLLGNAIKYTHEGGLSLRVHSKEMATTSASEKPYQHRVYVEVEDSGAGIGPEEVDK 527

Query: 738 VFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F+ FV  +   G   G GLGLSI   +I + GG + + S     +     IP +
Sbjct: 528 IFDAFVQVSSSKGISEGTGLGLSITRRYIQMMGGDIRVMSELGKGSLFKFDIPVE 582


>gi|94985371|ref|YP_604735.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94555652|gb|ABF45566.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 941

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 129/802 (16%), Positives = 281/802 (35%), Gaps = 79/802 (9%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQL-HQRIDIPQ 107
            +L +    T + L++   +L +  +                +    +  +     +   
Sbjct: 155 RALERAEEATRT-LAQSRARLERSRAEFEAIFQAIQDSAAFTDAAGRVQMVNPALTEQFG 213

Query: 108 TDTDLLSFENWLKFHHYIKLS-----KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGS 162
              + L+ E   + H   +L      +A     +         E Q    +   G V G 
Sbjct: 214 YSPEALAGEPLARLHLDERLEGHTTFRALTTPYRRADGSVFSGEAQRSEVLGPRGEVLGL 273

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
              +R         ++ +     + +       + + D++  ++W  D AG + + N  +
Sbjct: 274 LEVVR---------DVTDRVEAERAVQLGERRSRAVLDAIPHILWVSDPAGQVTYVNAQH 324

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           ++       V ++   E R  +    ++   +    +      +   E G+ + + ++RV
Sbjct: 325 RERLG-RDYVRERVAPEDRATYARMWEEAYATGRRTQCEV--RLLVGEQGSPRWF-VLRV 380

Query: 283 LNSFGEAG-------IAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFH 331
               GEAG        A D+   +        + E    +L ++   + + D      + 
Sbjct: 381 APITGEAGNVTEWVASATDIHDRLVAERLAQRSEERYRGVLESMPQIVWLTDPQGQPTYF 440

Query: 332 NRSFVELWEIDLA---FLATNPSND--ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
           NR + E    D A   FL+     D  +      +A         +         Y++  
Sbjct: 441 NRRWEEYVGQDRAGYGFLSLVHPEDRADYQARWAAAVSAEHPFEAEHRLLGADGRYRTFV 500

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIW------MFENLTVQVDLETK--YNTLVKVQGE 438
           T         GQ L  + TS      ++      +  +++ Q+    +    +       
Sbjct: 501 TRGLPVRDAAGQVLEWVGTSTDVDDQMYAEAASRLLADVSEQLSARAEDPLASRGASYRA 560

Query: 439 TID----HLSEGVAVFG--------PDGRIKL--SNPAFRSLWKTEENRLSPGTHIRNIA 484
            +D     L+EG  ++G           RI     +P  R L +    ++        + 
Sbjct: 561 ALDLITERLAEGAGLWGTPPELPLLATSRIDFQSVSPMLRQLAREAIQQVVRSEESLFVQ 620

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           A+     +E +        +   D   + + G       +  ++ +      +      N
Sbjct: 621 ASDEPLLHEVNASGAVLYPLIGRDGAVRGVLGLTYRQPPADRDHDLAHELAKRFATALDN 680

Query: 545 VTDSVRAERA---LTEKNEALRKA-----------DEIKNSFVQHVSYELRSPLTNIIGF 590
               + AE A   L   N++L +            +    +F   VS++LR+PL +I+GF
Sbjct: 681 DALRLEAEEAQANLQALNQSLEERVVLRTLELQDANRELEAFSYSVSHDLRTPLRHIVGF 740

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            DLL+    G L  K  +Y+  ++ ++  +  L++D+L+ + +  G  +L    + L+ +
Sbjct: 741 GDLLRKDAAGHLTPKGERYLSVMTDAAERMSQLIDDLLEFSRM--GRQELRRGPVDLSAV 798

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS--KGSTV 708
           + EV Q++       N++  +   G L +   D   L Q+F+ +LSNA+ ++   + + V
Sbjct: 799 VREVWQNLEPDRAGRNVQFDL---GPLPTVQGDAALLTQVFANLLSNALKYTRTREQAQV 855

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
            + A     +   +V++NG          +F  F       +  G G+GL+ V   +  H
Sbjct: 856 SVMAQESPQEVTVTVRDNGVGFDPRYADKLFGVFQRLHRAEEFEGTGIGLANVRRIVTRH 915

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG V   +        +  +P 
Sbjct: 916 GGRVRAEAVPGQGAAFSVTLPK 937


>gi|83765603|dbj|BAE55746.1| unnamed protein product [Aspergillus oryzae]
          Length = 2341

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+  +IG ++LLK +K   L+ +Q +YV
Sbjct: 1874 AEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKATK---LDKEQDEYV 1930

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1931 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETI 1990

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---DFIFSVK 724
               +      V   D  RL QIF  +LSN+  F+ KGS TV  +  R+         SV 
Sbjct: 1991 EDLEKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRARVTREGKGRIRLECSVS 2050

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F            G GLGLSI ++ I  + GG + + S+    
Sbjct: 2051 DTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVG 2110

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2111 TTVTFHL 2117


>gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
          Length = 933

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|300869219|ref|ZP_07113813.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332764|emb|CBN59011.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 607

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +         ++K+ F+ + S+ELR+PL  ++GF  L+    +     ++ Q+++ 
Sbjct: 335 QELEQARAEAVALSQLKSQFLANTSHELRTPLNGMLGFLKLVMDG-MADDPEEEHQFIQE 393

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+ND+LD+A ++AG M+L  + I +N+LL EV+     ++ +  +  K+ 
Sbjct: 394 AYRSALHLLNLINDVLDIAKIEAGKMELELTPIKINELLQEVENFTQAQLQQKQLNFKIQ 453

Query: 673 SDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST----------VILKAARDNGDFI 720
                       + QRLLQ+   ++ NA+ F+ +G            ++++     G   
Sbjct: 454 KPATQDEIIVYGNYQRLLQVMLNLVGNAIKFTHEGGISISMELIKKKIVIQNRELPGLVK 513

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  +  D    +F  F  V      Q  G GLGL+I +  +    G V+  S  
Sbjct: 514 IRVADTGIGVSLDKQDKLFQSFFQVDGDRTRQYGGTGLGLAISQKLVEAMRGTVNFYSMG 573

Query: 779 EG-VTTINCRIPSKE 792
           EG  +T+   IP  +
Sbjct: 574 EGLGSTVTFTIPLYQ 588


>gi|300955799|ref|ZP_07168141.1| PAS domain S-box [Escherichia coli MS 175-1]
 gi|300317345|gb|EFJ67129.1| PAS domain S-box [Escherichia coli MS 175-1]
          Length = 778

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFTLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter sakazakii ATCC BAA-894]
 gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894]
          Length = 973

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/584 (18%), Positives = 218/584 (37%), Gaps = 61/584 (10%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN----KSYKI 279
            N        ++   E  K  +   ++ +   +A +     ++  +  G        Y +
Sbjct: 176 DNLCMADFGLREIPLERDKTLQALHERIIKYRNAPQDERSNSLFWVSAGQRPGIGNFYSL 235

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH------NR 333
             V  +    G+ + + + I + +          ++ + + I D+N    F       N 
Sbjct: 236 TPVYLANRLQGL-LGIEQTIRIENFF-----TPGSMPMGVTILDENDRPLFSLTGSETNL 289

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKD 390
                WE + A+        +L+        LP     + +    + +    +    +  
Sbjct: 290 EPNGEWEQERAWFGYTSGFKQLI----LKKSLPPSSLSIVYSVPVDLVLERIRMLILNAV 345

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             ++  G  L  +     R   I    +         +     +   + +     G+ + 
Sbjct: 346 LLNVLVGIVLFTLARMYERRIFIPAEND-------AQRLEEHEQFNRKIVASAPVGICIL 398

Query: 451 GP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              DG   +SN     L     N L+     R     C +  N       F  ++TS + 
Sbjct: 399 RTQDGTNIISN----ELAHNYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN- 446

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
              +LQ +           +I            V+V+  V+ E +L E  +A  +A + K
Sbjct: 447 --TNLQISFVHSRYRNENVAI---------CVLVDVSARVKMEESLQEMAQAAEQASQSK 495

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  VS+ELR+PL  IIG  DLL+T +   L     + V  +  SS++LL +++DILD
Sbjct: 496 SMFLATVSHELRTPLYGIIGNLDLLQTQE---LPKGVDRLVTAMHNSSSLLLKIISDILD 552

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLL 688
            + +++  +K+        ++++ +  +    +    + +    +  +    + D  RL 
Sbjct: 553 FSKIESEQLKIEPREFSPREVMSHITANYQPLVVRKQLGLYCFIEPDVPMSLLGDPMRLQ 612

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH- 747
           Q+ S +LSNA+ F+  G  +IL          F V++ G  IP      +F+ F      
Sbjct: 613 QVISNLLSNAIKFTDIG-CIILHVGTQGDYLCFRVRDTGVGIPAKEVVRLFDPFFQVGTG 671

Query: 748 -RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +   +G GLGL+I E  IN+  G +S+ +     +    RIP 
Sbjct: 672 VQRNFQGTGLGLAICEKLINMMDGDISVDTEPGMGSQFTIRIPL 715


>gi|121705970|ref|XP_001271248.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
 gi|119399394|gb|EAW09822.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
          Length = 2333

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+  +IG ++LLK +   +LN +Q +YV
Sbjct: 1870 AEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGT---NLNKEQDEYV 1926

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1927 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETI 1986

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN-GDFIFS--VK 724
               D      V   D  RL QIF  +LSN+  F+ KGS TV  K +R+  G       V 
Sbjct: 1987 EDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKGRLRLECAVS 2046

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F            G GLGLSI ++ I  + GG + + S+    
Sbjct: 2047 DTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVG 2106

Query: 782  TTINCRI 788
            TT+  R+
Sbjct: 2107 TTVTFRL 2113


>gi|32477877|ref|NP_870871.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448434|emb|CAD77949.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 697

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 184/485 (37%), Gaps = 28/485 (5%)

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            +A+ D+   + F   +  E+       +      D++ +  R   +  E      +   
Sbjct: 75  GVAVADEKAAVLFGLPANQEVTR---EEVHRRFHPDDVFDIERKVKQSLEPDGTGEFATQ 131

Query: 378 IFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
              V+   E     W     +     V     P  G +    ++T Q + E    T    
Sbjct: 132 HRVVHPKGEVR---WVSVRKRIFFDEVDGKRVPVSGMVAAI-DITEQKETEHNIRTGETR 187

Query: 436 QGETIDHLSEGVAVFGPDGR---IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                +    G   +  D R      S+  +R          +       +       Y 
Sbjct: 188 LKLAAEVT--GFGTYDLDIRSSDCVWSDEIYRIFGIEIGETFTRTAMFDRVHPEDRARYR 245

Query: 493 ESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNA---QTMLTFVNVTD 547
           +            SF  E + +   G +  + +S L       P +   + + T  ++TD
Sbjct: 246 QLFLSLSGKDAKHSFKLEHRIVRPDGEVRWIINSGLLLFDERHPGSIPERVIGTMQDITD 305

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E++L +  +A   A+  +  F+ ++S+E+R+P+  I+G  D+L+       N    
Sbjct: 306 RKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDHLRDPDN---L 362

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q V+ I  +   LL ++NDILDL+ +DAG +++    +  + ++ EV+  +  +  E  +
Sbjct: 363 QVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDVRAAEKKL 422

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVK 724
            +++  DG + + +  D  R+ QI   ++ NA+ F+ +G  V L    D  +    F V 
Sbjct: 423 PLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDEG-VVRLTVRFDEANSCLQFHVI 481

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  D    +F+ FV   +   R   G GLGL+I     +   G V + S     +
Sbjct: 482 DTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVESQYGVGS 541

Query: 783 TINCR 787
                
Sbjct: 542 RFTLS 546


>gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
 gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
          Length = 576

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A++ K+ F+  +S+E+R+PL +++G  D+L+ S   +L+ +Q   +  +
Sbjct: 200 QLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQS---TLSDEQFDALNQM 256

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL +++DILDL+ +++G  +LN   I LND +  V           N+      
Sbjct: 257 ECSAELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVISQQKQVAITKNLSFNFDC 316

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                  +  D  RL QI   ++ NA+ F+  GS V +  A +N + + S+ + G  I  
Sbjct: 317 QISSDKQYWIDSTRLSQILFNLIGNAIKFTDSGS-VSVSVAEENDEVVVSISDTGIGISR 375

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  F        RR  G GLGL+I +  + +  G +S+ S +   +    RIP
Sbjct: 376 AKQAHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434


>gi|260364062|ref|ZP_05776785.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260879934|ref|ZP_05892289.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260894610|ref|ZP_05903106.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308086459|gb|EFO36154.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308091851|gb|EFO41546.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308114097|gb|EFO51637.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 125/251 (49%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+  Q
Sbjct: 357 EKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSPHQ 413

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I  SS  LL L+NDILDL+ +++G ++L+     + +++ +      +K     
Sbjct: 414 QEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKATSKQ 473

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDF 719
           + + +  D  + +  + D  R+ QI + ++SNA+ F+ +G  +++  + +       G  
Sbjct: 474 LELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YILVDVSYEEALEQGRGSL 532

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F +K++G  I  D   ++F  F         Q  G GLGL+I    +++ GG +  +S+
Sbjct: 533 TFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATST 592

Query: 778 DEGVTTINCRI 788
               T     I
Sbjct: 593 KGVGTCFGFSI 603


>gi|288942314|ref|YP_003444554.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897686|gb|ADC63522.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 894

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL E  +    A+  K+ F+  +S+E+R+P+  ++G  +LL  +    L+++Q ++ + I
Sbjct: 358 ALAEARDHAEAANRAKSDFLATMSHEIRTPMNAVLGMAELLLAT---DLDAQQQRFAQTI 414

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+++NDILD++ ++AG + L         L+ E  Q+ +       +R+ V  
Sbjct: 415 HRSGGALLDIINDILDVSKIEAGKLTLAPHDFDPRLLIEETAQTFSESASAKGLRLTVRL 474

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNG 727
              L      D  RL QI   ++ NA+ F+  G  + + A     A +       V++ G
Sbjct: 475 PRDLPGLVHGDSTRLRQILFNLIGNALKFTEHGE-IRVSASLTIHADERMTLAIEVRDTG 533

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           S I  +    +F  F        RR  G GLGL+I +   +L  G + + S+    +   
Sbjct: 534 SGIAPEFQAEIFEAFAQGDGSTTRRHGGTGLGLAISQRLAHLMDGSIRVESTPGQGSCFT 593

Query: 786 CR 787
             
Sbjct: 594 LE 595


>gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253]
          Length = 949

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 131/693 (18%), Positives = 253/693 (36%), Gaps = 93/693 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + SE    + + +     +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLTSETGVISSRGRDDKVDVPTFEPL 105

Query: 199 FDSLDFL----VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-------KEE 247
           F+  D      VW R     + W    ++ N      + +  +     L           
Sbjct: 106 FEDSDCSAMSNVW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGGDNLCMANFGLRDMP 164

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           I++     +  E+      +  +   N  + I            A+           L  
Sbjct: 165 IERDSALEALHERIMKYRNAPQDETGNNLFWIGEGPRPGIGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
             + +         +L + + I D+N        + + L   D                +
Sbjct: 225 VEQTIRMENFFTPGSLPMGVTILDENG------HTLISLTGPD--------------NKI 264

Query: 360 RSANKLPEQLNW----KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT--------SN 407
           ++  +  ++ +W      ++E +   +    +    + +P  Q L  I          + 
Sbjct: 265 KAEPRWMQERSWFGYTSGFRELVLKKHLPPSSLSIVYSVPVDQVLEHIRILILNAILLNV 324

Query: 408 PRGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSN 460
             G  ++    +  +           +     +   + +     G+ +    DG   LSN
Sbjct: 325 LVGAALFTLARMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN 384

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                L  T  N L+     R     C +  N       F  ++TS +    +LQ +   
Sbjct: 385 ----ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVH 430

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                   +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+EL
Sbjct: 431 SRYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHEL 481

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+
Sbjct: 482 RTPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKI 538

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
                   +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+
Sbjct: 539 EPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAI 598

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
            F+  G  +IL  ARD       V++ G  IP      +F+ F       +   +G GLG
Sbjct: 599 KFTDIG-CIILHLARDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLG 657

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I E  IN+  G +S+ S     +    RIP 
Sbjct: 658 LAICEKLINMMDGDISVDSEPGMGSQFTIRIPL 690


>gi|297537736|ref|YP_003673505.1| multi-sensor signal transduction histidine kinase [Methylotenera
           sp. 301]
 gi|297257083|gb|ADI28928.1| multi-sensor signal transduction histidine kinase [Methylotenera
           sp. 301]
          Length = 975

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 165/405 (40%), Gaps = 20/405 (4%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           T+      +     +   E L V V+  T       +     I +    +     DG I 
Sbjct: 561 TIETDRRRSAEQALLQHSEELEVMVEARTLSLQESEQRLTSVIKYAPIPILTIKMDGEII 620

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             NP    +     +       I            ES    +   I T   +  ++++  
Sbjct: 621 EFNPEAERVTGFSRSEAIGKNFIDIFV------VKESFKKAIGIGIGTKRGEAFRNVELI 674

Query: 518 LELLSDSVLEYSIIPLPNA--------QTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            +      +E+    +           Q +    ++T     + +L +  E+   AD IK
Sbjct: 675 FKCADGRKIEFECSIVKAGKNGVSDVGQMIAIGQDITQKKVLQASLIKARESAESADRIK 734

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + FV  +S+ELR+PL +IIGF  ++     G LN+KQ   +     S+  LL+L++D++D
Sbjct: 735 SMFVASMSHELRTPLNSIIGFLGVVLQGMSGDLNTKQKDQLGRAYHSAKHLLSLISDVID 794

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ ++AG ++++  +  L  + NEV   I       ++ +++     +     DR+RL Q
Sbjct: 795 ISKIEAGFLEIHTESFALKPMFNEVVNVIHHIADGKHLNLQIDCSEDII-LETDRKRLYQ 853

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
               ++SNA+ ++  GS V ++A   N + I + ++ G  I     + +F  F       
Sbjct: 854 AILNVVSNAVKYTEAGS-VTVEAKIINEELIITTQDTGIGISPSGLEQLFKPFERAESHL 912

Query: 750 QRR--GVGLGLSIVESF-INLHGGHVSISSSDEGVTTINCRIPSK 791
           + +  G GLGL +       L GG + + S     +T   R+P K
Sbjct: 913 KIKTLGTGLGLYLTRKILTQLLGGSIEVESQVGVGSTFTIRVPVK 957


>gi|254475552|ref|ZP_05088938.1| conserved hypothetical protein [Ruegeria sp. R11]
 gi|214029795|gb|EEB70630.1| conserved hypothetical protein [Ruegeria sp. R11]
          Length = 519

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 156/379 (41%), Gaps = 15/379 (3%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            I  +  +    + T  +   +   ++  +       + VW +   G + W+N++Y   +
Sbjct: 125 WIDGVTRVQLRSSNTQEQNHSIDQELTTLRSAVHQAPYPVWLQSDDGAVTWSNLAYDDLS 184

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
                  QK  G +   F E +   +    A  K    ++   +      Y I       
Sbjct: 185 -------QKIRGRNVD-FSEPLFTDLDDPMASGKPERISIPLPDSKKKLWYNISTTETES 236

Query: 287 GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G    A+DV+     EI   + +    +    L++ +AIFD+NR L   N   ++L  + 
Sbjct: 237 GWLCHAVDVNAVVDAEIAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALP 296

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTL 400
             FL++ P+     + LR    +PE  N+ +W+  +  + +++    +++TW LP+G   
Sbjct: 297 ANFLSSRPNMMTFFDRLRDQRMMPEPKNYSSWRHQMADLLEAASEGRYQETWSLPSGSVY 356

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            V    +P G   ++FE++T ++ L  ++ + +++    +D + + +AVF  DG +  SN
Sbjct: 357 SVSGRPHPDGAIAFLFEDITAEITLTRQFRSELEMGQSIMDQMDDAIAVFANDGSMTFSN 416

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A+  LW+ + +       I + +         +  W      +   D  R      ++L
Sbjct: 417 AAYHELWQMDPDASFAKVTIMDSSRVWQNMCAATPAWGEIRDFVAGGDG-RTPWWANVQL 475

Query: 521 LSDSVLEYSIIPLPNAQTM 539
            + + L   +  + N  TM
Sbjct: 476 RNGTPLVCKVSAIQNGATM 494


>gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SE11]
 gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11]
          Length = 949

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENHLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|332308060|ref|YP_004435911.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175389|gb|AEE24643.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 903

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +       L E      +A   K+ F+ ++S+E+R+P+  IIG  D++  S+   L S Q
Sbjct: 371 EQETLNAELVEAKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKSE---LTSTQ 427

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q++  +  SS IL++L+NDILD + V+AG + +      LN +   +  +I+ +  E N
Sbjct: 428 RQHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQEKN 487

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIF 721
           + ++ I D  +    + D  R+ Q+   + SNA+ F+  GS V +    D    +   + 
Sbjct: 488 LNVRFICDPNIPPILIGDPLRISQVLLNLSSNAVKFTRNGS-VTISVTYDIIPNSNKLLL 546

Query: 722 --SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
              V++ G  + ++    VF  F        R   G GLGL+IV+  + L GG V+  S 
Sbjct: 547 RARVQDTGIGMSKEQLDKVFESFTQADGSTSRDFGGTGLGLTIVKQLVKLMGGKVTAESK 606

Query: 778 DEGVTTINCRI 788
               +T     
Sbjct: 607 VNVGSTFEVSF 617


>gi|328470983|gb|EGF41894.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 124/251 (49%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+  Q
Sbjct: 357 EKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSPHQ 413

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I  SS  LL L+NDILDL+ +++G ++L+     + +++ +      +K     
Sbjct: 414 QEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKATSKQ 473

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDF 719
           + + +  D  + +  + D  R+ QI + ++SNA+ F+ +G  + +  + +       G  
Sbjct: 474 LELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YISVDVSYEEALEQGRGSL 532

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F +K++G  I  D   ++F  F         Q  G GLGL+I    +++ GG +  +S+
Sbjct: 533 TFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATST 592

Query: 778 DEGVTTINCRI 788
               T     I
Sbjct: 593 KGVGTCFGFSI 603


>gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
 gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
          Length = 932

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  V ++     GD     F V++ G
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|90578034|ref|ZP_01233845.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
 gi|90441120|gb|EAS66300.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
          Length = 1311

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 170/394 (43%), Gaps = 23/394 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           T+ ++ N  +  ++  + N   K+    + +  +GV +          +  F  + +   
Sbjct: 517 TVIIYWNRRLSREITQRKNAEQKL--TYLTNNFDGVLIQHLQKSHDPYDIEFLFISEKIN 574

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER------KSLQGTLELLSDSV 525
           + +     +  I    S  +N     D F ++  +            +LQ     L    
Sbjct: 575 HFIDYEASM--IYKNPSLLFNILKQRDDFTSLYLAMQQAVSVGYWSTNLQIHSNTLKPRW 632

Query: 526 LEYS--IIPLPNAQTMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +E    I  + N     T + ++T +   + AL E NE    A E K+ F+  +S+E+R+
Sbjct: 633 IELRCQISEVENGWQWNTIILDITQTKEQQVALMEANEKSLAATESKSRFLAMMSHEIRT 692

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P++ I+   +L++        ++  Q    +S S   LLN+VND+LD + ++AG + +N 
Sbjct: 693 PISGILSLLELMEPHVK---TTELRQIHHNLSQSGRNLLNIVNDVLDFSKIEAGKLSINP 749

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDF 701
           S   ++DL++E+ Q  +    +  I   +  D  +    + D  RL QI + +++NA+ F
Sbjct: 750 SENNISDLIHELVQPHSIHAQQKEITFTLWLDPAIAHCLLFDEVRLTQILNNLINNAIKF 809

Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + +G+  +    ++ +       FS+ + G  I  +  + +F  FV       RR  G G
Sbjct: 810 TVQGNIHLAVDMIQESASQQRLTFSIIDTGIGIKPEDLQRLFQPFVQVEQNSNRRFSGTG 869

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LGLSI      L GG +   S     TT +  IP
Sbjct: 870 LGLSICHQLAQLMGGEIVAKSDINIGTTFSVTIP 903


>gi|37930220|gb|AAP76280.1| GacS [Pseudomonas sp. PCL1171]
          Length = 917

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S++   + +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEM---SPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 + V D  RL QI + ++SNA+ F+ +G+ V      D  +       SV++ G 
Sbjct: 387 YRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 1051

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 130/257 (50%), Gaps = 17/257 (6%)

Query: 546 TDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +  +A++ LT+  E          +A + K+SF+ ++S+E+R+PL  +IG +++L  + 
Sbjct: 365 HEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADT- 423

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L + Q  YV+ I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   +
Sbjct: 424 --PLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIV 481

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAA 713
           + K+ E  I + V IS       V D  RL Q+    +SNA+ F+ +GS       L++ 
Sbjct: 482 SPKVKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESN 541

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                  FSV+++G  I E   K +F  F        R   G GLGL+I    + L GG 
Sbjct: 542 ESEAVIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGS 601

Query: 772 VSISSSDEGVTTINCRI 788
           + + S     +    ++
Sbjct: 602 IQLESEKGRGSRFYFQL 618


>gi|302542098|ref|ZP_07294440.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302459716|gb|EFL22809.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1823

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/325 (26%), Positives = 138/325 (42%), Gaps = 38/325 (11%)

Query: 494  SDGWDLFAAIITSFDDERKSLQG---TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
             +  +         ++ +K+LQ     LE  SD +           Q     V  T+   
Sbjct: 1262 QELTEQLRERSAELENRQKALQASNAELEEKSDRLAR---------QNRDIEVKNTEIEE 1312

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ 
Sbjct: 1313 ARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFA 1372

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   
Sbjct: 1373 ETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFS 1432

Query: 671  VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------------- 713
            V    +L  +   D QRLLQ+   +LSNA+ F+  G  V L                   
Sbjct: 1433 VRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTD-GGAVELVIRPAGVDVPNAIREQLLE 1491

Query: 714  ------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
                   +     FSV + G  I     + +F  F         +  G GLGLSI     
Sbjct: 1492 HGALRDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIA 1551

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
             L GG +  +S     +T    +P 
Sbjct: 1552 RLLGGEIHAASEPGRGSTFTLYLPL 1576


>gi|302916471|ref|XP_003052046.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732985|gb|EEU46333.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 2624

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 18/252 (7%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +   +A + K+ F+ +VS+ELR+PL  +IG ++LL+ S    L+  Q +  
Sbjct: 1923 AEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS---DLDKDQLEMA 1979

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI----ATKMHENN 666
            + I  S+ +LL ++NDILD + ++A  MKL        D++ EV +++      K  + N
Sbjct: 1980 DSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKTSKKN 2039

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIF 721
            ++I    +        D  RL Q+   ++ N++ F+  GS + + A      +++    F
Sbjct: 2040 VKIVQDINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGS-ITIGARLDKETKEHAMLTF 2098

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSD 778
             V++ G  IP      +F  F         +  G GLGLSI +S I  +  G + + S +
Sbjct: 2099 WVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEE 2158

Query: 779  EGVTT--INCRI 788
               TT       
Sbjct: 2159 NVGTTAWFTVTF 2170


>gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii Sb227]
 gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83]
 gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74]
          Length = 949

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 126/681 (18%), Positives = 245/681 (35%), Gaps = 69/681 (10%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
             + +          L + + I D+N        + + L     + +   P   +   + 
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTG-PESKIKGEPRWMQERSWF 277

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
                  E +  K    +  S+  S               L+ I+ +   G  ++    +
Sbjct: 278 GYTEGFRELVLKKNLPPSSLSIVYSV-PVDKVLERIRMLILNAILLNVLAGAALFTLARM 336

Query: 420 TVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEEN 472
             +           +     +   + +     G+ +    DG   LSN     L  T  N
Sbjct: 337 YERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN----ELAHTYLN 392

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L+     R     C +  N       F  ++TS +    +LQ +           +I  
Sbjct: 393 MLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI-- 440

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                     V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  D
Sbjct: 441 -------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N
Sbjct: 494 LLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMN 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L 
Sbjct: 551 HITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLH 609

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
              D       V++ G  IP      +F+ F       +   +G GLGL+I E  I++  
Sbjct: 610 VRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMD 669

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +S+ S     +    RIP 
Sbjct: 670 GDISVDSEPGMGSQFTVRIPL 690


>gi|83944051|ref|ZP_00956508.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36]
 gi|83845298|gb|EAP83178.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36]
          Length = 798

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 99/510 (19%), Positives = 185/510 (36%), Gaps = 42/510 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             K   +  Q      IL N  + I    Q+  +   N +  +        +A     D 
Sbjct: 311 ADKTRELETQHQEKRSILENAMLPIISVRQSGEILHLNDAARQ------HLIAAGHRKDA 364

Query: 355 LLEFLRSANKLPEQLNWKTW--------KENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
             +F++    LPE    +               +  ++ E  K+TW   + +T       
Sbjct: 365 TGDFVQD--LLPEVDIHRADGGAKVVVPPHKGTTEPRTLEVEKNTWLTADAET------- 415

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                   M  ++T       K     +     +     GV     +    + +  +R +
Sbjct: 416 ----RITLMLRDITDSERRTLKIAETEQRWSLALSSAHIGVFDIDLENGTSVVSDTWRDI 471

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                +      +   +      + +++           +   +R   +  + +  D+  
Sbjct: 472 MHHPADPACQNPYYDKMQHV---HPDDAAVVKKIELACLNGMTDRAEARFRIRVGQDNW- 527

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPL 584
                     ++    V    + RA R L          K +++K+ FV  VS+ELR+PL
Sbjct: 528 -------RWIKSDAVVVERAKNGRALRMLGIQIDITESNKLEQMKHDFVATVSHELRTPL 580

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T+I G   LL+       ++   + V+  +A+   L+ LVNDILD+  ++AG M +    
Sbjct: 581 TSIKGALGLLEAQTQDDPDAGAVRLVQIATANCDRLVALVNDILDMEKINAGSMTVVPKP 640

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L D++    + +     E  + I V +       + D+ R++Q+ + +LSNA  F+  
Sbjct: 641 EKLGDIVTLAAEQVEPYASEWKVEIDVDTPDPDHHVLTDKNRIMQVLTNLLSNACKFAYP 700

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
            + V +  A        SV N G+ I E+  + +F  F     ++  QR G GLGL+I  
Sbjct: 701 ETAVTVTTAPVGDMTKISVTNLGNGISEEFRERIFQPFSQAEASNTRQRGGTGLGLNISR 760

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +   GG +   S     T      PS E
Sbjct: 761 HLVEAMGGEIGFDSVPGEETVFWFTCPSTE 790


>gi|326326124|ref|YP_004250934.1| putative sensor protein [Vibrio nigripulchritudo]
 gi|323669176|emb|CBJ93233.1| Putative sensor protein [Vibrio nigripulchritudo]
          Length = 688

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 148/372 (39%), Gaps = 25/372 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            ++     +   + ++ + + +       RI   +        + E     G  I+ I  
Sbjct: 193 TSELRQNRERFRDFVNSVGDCLWETDSSYRINYVSEV------SSEKASFYGKKIQTILE 246

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML----- 540
             S  +      D    I        + L+          L  S  P  +          
Sbjct: 247 GESVCHQLVIAMDARQPI--------RDLEWRYNADKGIWLSISGAPFYDLDGRFLGYRG 298

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +++ S      L        KA++ K+ F+  +S+E+R+PL  I+G  D+L +    
Sbjct: 299 TVKDISQSKLRYLELKRARSEAEKANQAKSQFLATMSHEIRTPLNAILGLIDVLLSKCTD 358

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             N+     +  + +S+ +LL +++D+LDL+ +++G ++L+  ++ + D+++   Q    
Sbjct: 359 KNNTDV---LRMMESSAELLLAIISDVLDLSKIESGRVELSVKSVNVRDVVSGNLQHYQL 415

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             +E  +++ +     +      D  RL QI   ++ NA+ F+  G   +    +     
Sbjct: 416 VANEKGLKLSLDLADDIPHQIHTDATRLSQILFNLVGNAVKFTEAGEIRVKVIRQPGQTL 475

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +  V + G  I E + + VF  F+       RR  G GLGL+I +    L GG +++ S 
Sbjct: 476 VIRVTDTGLGIDESVLEKVFKPFIQADGSITRRFGGSGLGLAISKQLAKLLGGDITVKSQ 535

Query: 778 DEGVTTINCRIP 789
               +     +P
Sbjct: 536 RHQGSEFTLTLP 547


>gi|308126279|ref|ZP_05908879.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308107066|gb|EFO44606.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 882

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 124/251 (49%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+  Q
Sbjct: 361 EKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSPHQ 417

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I  SS  LL L+NDILDL+ +++G ++L+     + +++ +      +K     
Sbjct: 418 QEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKATSKQ 477

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDF 719
           + + +  D  + +  + D  R+ QI + ++SNA+ F+ +G  + +  + +       G  
Sbjct: 478 LELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YISVDVSYEEALEQGRGSL 536

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F +K++G  I  D   ++F  F         Q  G GLGL+I    +++ GG +  +S+
Sbjct: 537 TFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATST 596

Query: 778 DEGVTTINCRI 788
               T     I
Sbjct: 597 KGVGTCFGFSI 607


>gi|115374744|ref|ZP_01462020.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368221|gb|EAU67180.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 641

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/497 (18%), Positives = 169/497 (34%), Gaps = 38/497 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           I  +  + +  F    ++   N  F E+                 L  LR    +     
Sbjct: 149 IFEHAPLGLFHFGNPPFIIACNDCFAEILG-----STRQRLLGLNLLTLRDTRLM----- 198

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDL 425
               +  +   +   E H  +        + V             G + + E++T Q  +
Sbjct: 199 -DCVRATLLGKHARYEGHYTSVTTGKVTPVRVHFAPFFDEQERVVGGVGIVEDITSQHRM 257

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----------NRLS 475
           E +  T + +    +     G+A F    R    N A  +                   S
Sbjct: 258 EEERATQLALASTLLRTAPIGMAFFDTRLRFVHINDALATATGQPPEAHLGRSLPAMLGS 317

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G H+              +  +L A  +         L G     + S+     +    
Sbjct: 318 GGLHLEQFLRHVLETGQPLERLELSAQEL--------GLAGPWLYWTLSIYPVRAVDGRI 369

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                   N T +  AE+  +      ++A  +++ F+   S+EL++PLT +      L+
Sbjct: 370 LGIGSVVENTTGTKLAEQERSRLLREAQEAVRVRDDFLTIASHELKTPLTPLSLRLATLE 429

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             KL          + +     T L  L+ND+LD + +++G + L+     L+ L+  V 
Sbjct: 430 R-KLERGEPVDPASLHHARQHLTRLTTLINDLLDTSRIESGGLALHPQPTRLDVLIEHVI 488

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               T     + RI      +    + D  RL Q+ S +L NA+ +S  G T+ +     
Sbjct: 489 HVTETLHDARD-RITFHLPVRPIEVLGDPYRLEQVISNLLENALKYSPDGGTIRVSLEAR 547

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
               + +V + G  IP D  + +F R+            G+GLGL I    +  HGG + 
Sbjct: 548 GDVVLMTVSDPGIGIPSDQQQHLFERYFRARNVSTHAYGGLGLGLYICRDIVARHGGSIW 607

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +T    +P+
Sbjct: 608 VESEVGRGSTFYVALPT 624



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 75/266 (28%), Gaps = 29/266 (10%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKK---NTETEGIVFQKAIGESRKLFKEEIKK 250
           +++++F+     ++H      I+  N  + +   +T    +          +L       
Sbjct: 145 LYQLIFEHAPLGLFHFGNPPFIIACNDCFAEILGSTRQRLLGLNLLTLRDTRLMDCVRAT 204

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAIDVSK----EITVNDQ 304
            +   +  E ++    +         +           G  GI  D++     E     Q
Sbjct: 205 LLGKHARYEGHYTSVTTGKVTPVRVHFAPFFDEQERVVGGVGIVEDITSQHRMEEERATQ 264

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE----------IDLAFLATNPSNDE 354
           L     +L    + +A FD        N +                +     +     ++
Sbjct: 265 LALASTLLRTAPIGMAFFDTRLRFVHINDALATATGQPPEAHLGRSLPAMLGSGGLHLEQ 324

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            L  +    +  E+L     +  +   +             +G+ L          G   
Sbjct: 325 FLRHVLETGQPLERLELSAQELGLAGPWLYWTLSIYPVRAVDGRIL----------GIGS 374

Query: 415 MFENLTVQVDLETKYNTLVKVQGETI 440
           + EN T     E + + L++   E +
Sbjct: 375 VVENTTGTKLAEQERSRLLREAQEAV 400


>gi|52143870|ref|YP_082958.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977339|gb|AAU18889.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 591

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|327538058|gb|EGF24748.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 638

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 184/485 (37%), Gaps = 28/485 (5%)

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            +A+ D+   + F   +  E+       +      D++ +  R   +  E      +   
Sbjct: 16  GVAVADEKAAVLFDLPANQEVTR---EEVHRRFHPDDVFDIERKVKQSLEPDGTGEFATQ 72

Query: 378 IFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
              V+   E     W     +     V     P  G +    ++T Q + E    T    
Sbjct: 73  HRVVHPKGEVR---WVSVRKRIFFDEVDGKRVPVSGMVAAI-DITEQKETEHNIRTGETR 128

Query: 436 QGETIDHLSEGVAVFGPDGR---IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                +    G   +  D R      S+  +R          +       +       Y 
Sbjct: 129 LKLAAEVT--GFGTYDLDIRSSDCVWSDEIYRIFGIEIGETFTRTAMFDRVHPEDRARYR 186

Query: 493 ESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNA---QTMLTFVNVTD 547
           +            SF  E + +   G +  + +S L       P +   + + T  ++TD
Sbjct: 187 QLFLSLSGKDAKHSFKLEHRIVRPDGEVRWIVNSGLLLFDERHPGSIPERVIGTMQDITD 246

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E++L +  +A   A+  +  F+ ++S+E+R+P+  I+G  D+L+       N    
Sbjct: 247 RKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDHLRDPDN---L 303

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q V+ I  +   LL ++NDILDL+ +DAG +++    +  + ++ EV+  +  +  E  +
Sbjct: 304 QVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDVRAAEKKL 363

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVK 724
            +++  DG + + +  D  R+ QI   ++ NA+ F+ +G  V L    D  +    F V 
Sbjct: 364 PLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDEG-VVRLTVRFDEANSCLQFHVI 422

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  D    +F+ FV   +   R   G GLGL+I     +   G V + S     +
Sbjct: 423 DTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVESQYGVGS 482

Query: 783 TINCR 787
                
Sbjct: 483 RFTLS 487


>gi|289648121|ref|ZP_06479464.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866044|gb|EGH00753.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 917

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|302382462|ref|YP_003818285.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193090|gb|ADL00662.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 580

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 131/273 (47%), Gaps = 10/273 (3%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             VL  + + +   Q+ +T   + D+    RA   K E        K+ F+  VS+E+R+
Sbjct: 162 GGVLYMTHLIVAVRQSSMTTRALQDANDEARAERRKAEVA---SAAKSDFLAVVSHEIRT 218

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  +I   +LL+ ++   L+ +Q ++V  +  +  +L+ L+ND+LD + ++AG M+L  
Sbjct: 219 PMNAVISAANLLRRTR---LDREQREHVSMLLDAGDVLVGLLNDVLDFSKIEAGKMQLEA 275

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
             I L D +  + +    K   N +R+KV+ D    +    D  RL Q+   +LSNA+ F
Sbjct: 276 QDIDLRDKIGSLIRLWEPKASANGVRLKVLIDDAAPARIRTDPLRLQQMLFNLLSNAVKF 335

Query: 702 SSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGL 758
           +  G+  + +    ++G  I SV + G  IP D    +F+ F         +  G GLGL
Sbjct: 336 TEDGTISIAVDWRAEDGRLIVSVADTGCGIPADRLAHIFDSFEQVDAGTTRKYGGTGLGL 395

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I      + GG ++  S +   +     +P +
Sbjct: 396 AISRRLAEIMGGRLTAESVEGEGSVFTLSLPVE 428


>gi|229029256|ref|ZP_04185347.1| hypothetical protein bcere0028_13530 [Bacillus cereus AH1271]
 gi|228732069|gb|EEL82960.1| hypothetical protein bcere0028_13530 [Bacillus cereus AH1271]
          Length = 591

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + +  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEVELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N    F V+++G
Sbjct: 463 VLTVDFQNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLTFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|206968213|ref|ZP_03229169.1| sensor histidine kinase ResE [Bacillus cereus AH1134]
 gi|229177984|ref|ZP_04305356.1| hypothetical protein bcere0005_13470 [Bacillus cereus 172560W]
 gi|206737133|gb|EDZ54280.1| sensor histidine kinase ResE [Bacillus cereus AH1134]
 gi|228605472|gb|EEK62921.1| hypothetical protein bcere0005_13470 [Bacillus cereus 172560W]
          Length = 591

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V    ++  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ELTVDFRNQIEEYAFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|153837192|ref|ZP_01989859.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149749609|gb|EDM60355.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 882

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 124/251 (49%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+  Q
Sbjct: 361 EKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSPHQ 417

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I  SS  LL L+NDILDL+ +++G ++L+     + +++ +      +K     
Sbjct: 418 QEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKATSKQ 477

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDF 719
           + + +  D  + +  + D  R+ QI + ++SNA+ F+ +G  + +  + +       G  
Sbjct: 478 LELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YISVDVSYEEALEQGRGSL 536

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F +K++G  I  D   ++F  F         Q  G GLGL+I    +++ GG +  +S+
Sbjct: 537 TFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATST 596

Query: 778 DEGVTTINCRI 788
               T     I
Sbjct: 597 KGVGTCFGFSI 607


>gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured
           bacterium]
          Length = 962

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 30/377 (7%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           +   + Q   I+ ++E +A+            AF S    E+ +       +      ++
Sbjct: 153 DEFTERQRNFIEQVAENIAI------------AFNSTQVREKMQTLLEETQQQAEELQAQ 200

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDS 548
                   +      T+  +  + LQ   E L  +  E +        Q  +   N  + 
Sbjct: 201 QEQLRVNNEELETQTTALRESEQKLQAQQEELRQTNAELAEQTHALEQQQKILQDNNREL 260

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A   + EK   L  + + K+ F+ ++S+ELR+PL +++  + LL  +K  +L  KQ +
Sbjct: 261 EQARELVEEKANELELSSKYKSEFLSNMSHELRTPLNSLLILSRLLYENKDENLTDKQIE 320

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   + A+ T LL L+N++LDL+ ++AG M LN   + L    + V+Q       E  + 
Sbjct: 321 YSRTVHAAGTELLELINEVLDLSKIEAGRMVLNIEEMNLKGFTSYVEQHFLHIAEEKGLY 380

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------- 714
           + +     +  S   DRQR+ QI   +LSNAM F++ G  + ++  R             
Sbjct: 381 LHIALAEDVPSSLYTDRQRVEQIVKNLLSNAMKFTTSGG-ITIQIDRPTAGIDLSRSTLN 439

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
                  SV + G  IPE+  + +F  F         +  G GLGLSI      L GG +
Sbjct: 440 PQHAVAISVSDTGVGIPEEKQRVIFEAFQQADGTTSRKYGGTGLGLSITRELAKLLGGEI 499

Query: 773 SISSSDEGVTTINCRIP 789
            + S +   +T    +P
Sbjct: 500 QLRSEEGKGSTFTLYLP 516


>gi|323979073|gb|EGB74151.1| hsp90-like protein [Escherichia coli TW10509]
          Length = 778

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|221126281|ref|XP_002164625.1| PREDICTED: similar to histidine kinase [Hydra magnipapillata]
          Length = 547

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 126/264 (47%), Gaps = 10/264 (3%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            P      +    ++T S  A +A+   ++   +A+  K+SF+ ++S+E+R+P+  I+G 
Sbjct: 13  TPDHRNAVLGVLEDITPSYEARQAIEHAHQQAEEANRAKSSFLANMSHEIRTPMNAIMGM 72

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + L++ ++   LN +Q  Y+  I +SS  LL ++NDILD + ++AG + + +    L+ +
Sbjct: 73  SYLVQKTE---LNERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGKLGIEHIEFELDKV 129

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
           L+ +   +  K     + +    D ++    V D  RL QI     +NA+ F+ +G   +
Sbjct: 130 LDNLAGLVGDKAASKGLELVFDVDKQVPLQLVGDPLRLGQILVNYANNAVKFTERGEIDI 189

Query: 709 ILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
            ++   ++       F+V++ G  I E+    +F  F        R   G GLGL+I   
Sbjct: 190 RVRVQEESTSHVVLHFAVRDTGIGISEEQKSVLFQSFQQADASTTRKFGGTGLGLAISRQ 249

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
              +  G V + S+    +T    
Sbjct: 250 LAQMMEGEVGVDSTFGQGSTFWFT 273


>gi|171316802|ref|ZP_02906013.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171098060|gb|EDT42876.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1004

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 21/369 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +      +    +     G+ +   D G + L N   R+                 + A
Sbjct: 393 KRILDSENLNRAMVATAPTGLVLLELDQGAVLLENDVARAF--AARVSGGTPPLRERLHA 450

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              +  +           + + D ER  L          V     I L     +  FV++
Sbjct: 451 LFRQTAHARPAQTERELTVETNDGERSDL---------LVNAVRAIYLGRDAILCNFVDI 501

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T   R ER L E + A   A   K++F+  +S+E+R+PL  I+G  +LL  +    L+  
Sbjct: 502 TARKRLERNLAEASRAAESASRAKSAFLATMSHEIRTPLNAILGSLELLDRT---PLSDA 558

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q + V+    S T LL +VNDILD++ ++AG M + + +  L  L  +V           
Sbjct: 559 QRKRVQTALTSGTSLLGIVNDILDVSKIEAGQMTIEHVSFDLASLARDVAAMFEPVAKSR 618

Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIF 721
           ++    + D  L   ++ D  R+ QI   ++ NA+ F+  G     V L+ A D      
Sbjct: 619 HLDFCCMVDPALAPRYIGDPTRIRQIMINLVGNAIKFTESGEVVLEVYLEDADDRNRIAI 678

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V ++G  +  +  +++F+ F        RR  G GLGL++ +   +L  G +   S   
Sbjct: 679 GVIDSGIGMSPEQQQNLFHAFTQADTSIARRFGGTGLGLALCKQLTDLMHGDIESISEPG 738

Query: 780 GVTTINCRI 788
             +T   R+
Sbjct: 739 VGSTFIVRL 747


>gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
 gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
          Length = 932

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  V ++     GD     F V++ G
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|317139763|ref|XP_001817748.2| sensor histidine kinase/response regulator [Aspergillus oryzae RIB40]
          Length = 2326

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+  +IG ++LLK +K   L+ +Q +YV
Sbjct: 1859 AEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKATK---LDKEQDEYV 1915

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1916 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETI 1975

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---DFIFSVK 724
               +      V   D  RL QIF  +LSN+  F+ KGS TV  +  R+         SV 
Sbjct: 1976 EDLEKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRARVTREGKGRIRLECSVS 2035

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F            G GLGLSI ++ I  + GG + + S+    
Sbjct: 2036 DTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVG 2095

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2096 TTVTFHL 2102


>gi|315179123|gb|ADT86037.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
          Length = 915

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 141/319 (44%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 183 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATS 242

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 243 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 300

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        + L EV  
Sbjct: 301 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVN 356

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
             AT  HE  + I +  D K+ +  V D  R+ Q+ + ++ N++ F+ +G+  + ++   
Sbjct: 357 LQATSAHEKGLEITLKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRS 416

Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
              D +   F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 417 QRDDVVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMG 476

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 477 GEISLTSRLHQGSTFWFTL 495


>gi|254227799|ref|ZP_04921230.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|151939841|gb|EDN58668.1| conserved hypothetical protein [Vibrio sp. Ex25]
          Length = 790

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 125/251 (49%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+S Q
Sbjct: 269 EKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSSHQ 325

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I +SS  LL L+NDILDL+ +++G ++L+     + +++ +      +K     
Sbjct: 326 QEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMVLFQSKATSKQ 385

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDF 719
           + + +     + +  + D  R+ Q+ + ++SNA+ F+  G  + +  + D       G  
Sbjct: 386 LELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGH-IRVDVSYDELSEKECGVL 444

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F V++ G  I +D   ++F  F         Q  G GLGL+I    +++ GG +  +S+
Sbjct: 445 MFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQLIATST 504

Query: 778 DEGVTTINCRI 788
               T     I
Sbjct: 505 KGVGTCFEFSI 515


>gi|168215911|ref|ZP_02641536.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182381727|gb|EDT79206.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 623

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/507 (18%), Positives = 200/507 (39%), Gaps = 31/507 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           EI +  +       L +LT  +   D +      N++F     I+  ++      D   +
Sbjct: 103 EINLKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKVGIEKKYIIGKTDKDIFFD 162

Query: 358 FLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRG 410
                   P ++    KT +E I S  K     +  +   +G     + +      N   
Sbjct: 163 -------DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVK 215

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I +  +++ +  +E +     K+  E +++L + V +     +    N AF  L+   
Sbjct: 216 GIIGLTRDISYKKAIEYRLKKNDKMFFEVLNYLDD-VVIIKEGEKTIYVNHAFEKLYGLN 274

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L        +     R + E D +        +F  E+  +      + + +   + 
Sbjct: 275 CKELYKEKS---MIVKLDRIHPE-DRYKFINIDFGNFFMEKARIVRADNEIRNVLFRANS 330

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           I   N +++   + + D       +T+  E   + ++++  F  ++S+E ++P+  I   
Sbjct: 331 IKNENGESIRRIIVIND-------ITDTIEKSNEMEKLRMEFFANISHEFKTPVNLIYSA 383

Query: 591 TDLLK---TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             LL+    + +         Y++    +   LL L+N+++D   ++AG   +N     +
Sbjct: 384 LQLLELKLKNNIYRDEDSYINYIKMAKQNVFRLLKLINNLIDSTKLEAGFFNVNIKNHDI 443

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              + ++  SI     +N I I   ++ +      D   L +I   ILSNA+ F+ +   
Sbjct: 444 VSCVEDITMSICGFAEKNKISITFDTEEEEKIIAFDLNHLERILLNILSNAIKFNRENGN 503

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           + +  + D      S+K+ G  I +D    +F+RF    +R  +   G G+GL I +  +
Sbjct: 504 IDVYMSFDERYANISIKDTGIGIQKDKIDLLFDRFKKINNRLTKVNEGSGIGLFIAKELV 563

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            ++GG + ++S     T    ++P K+
Sbjct: 564 KINGGEMRVNSELGEGTEFIIKLPIKK 590



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 101/282 (35%), Gaps = 42/282 (14%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L     +  +  DSL   V+ +D  G  +  N +++      GI  +  IG++ K    +
Sbjct: 106 LKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKV---GIEKKYIIGKTDKDIFFD 162

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------------GEAGIAI 293
              ++ +    ++    +     +G    ++                      G  G+  
Sbjct: 163 DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVKGIIGLTR 222

Query: 294 DVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+S +  +  +L       +E+L+ L   + I  +     + N +F +L+ ++   L   
Sbjct: 223 DISYKKAIEYRLKKNDKMFFEVLNYLDD-VVIIKEGEKTIYVNHAFEKLYGLNCKELYKE 281

Query: 350 PSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLP------NGQTLHV 402
            S    L+ +   ++     +++  +      + ++    ++           NG+++  
Sbjct: 282 KSMIVKLDRIHPEDRYKFINIDFGNFFMEKARIVRADNEIRNVLFRANSIKNENGESIR- 340

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                     I +  ++T  ++   K N + K++ E   ++S
Sbjct: 341 ---------RIIVINDITDTIE---KSNEMEKLRMEFFANIS 370


>gi|159898358|ref|YP_001544605.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891397|gb|ABX04477.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 569

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 133/268 (49%), Gaps = 12/268 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           L+ ++  L + +T     +V ++  A+R          +A+  K+ F+  +S+ELR+PL 
Sbjct: 173 LQANLQHLVDERTAQLATSVQEAKSAQRL-------AEQANLRKSQFLATMSHELRTPLN 225

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            II  T+ +     G LNS+Q  Y + +  +   LL+L+NDILDL+ ++AG ++L +  +
Sbjct: 226 AIINMTEFI--DWFGPLNSQQKSYQDQVRGAGEHLLHLINDILDLSKIEAGRIELQFGQV 283

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
              D+  EV +++        ++I        G   AD + + QI   +LSNA+ F+  G
Sbjct: 284 DCGDIAQEVLETVRPLAESKGLQIAYHHADGTGLAWADSKAIKQIVLNLLSNAIKFTETG 343

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVES 763
             + +           SV + G  I  +  + ++  F  + +A   +  G GLG+SI + 
Sbjct: 344 -QIRVALEFSATTVNISVHDTGIGIAREQQQFIWESFRQIQSADDREYEGTGLGMSITKQ 402

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++LHGG++++ S     T     +P+K
Sbjct: 403 LVDLHGGNITVESELGQGTQFQVCLPTK 430


>gi|228899677|ref|ZP_04063929.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
 gi|228859957|gb|EEN04365.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
          Length = 896

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|209964312|ref|YP_002297227.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
 gi|209957778|gb|ACI98414.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
          Length = 911

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 152/339 (44%), Gaps = 20/339 (5%)

Query: 461 PAFRSLWKTEENRLSPGTHIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            AF+ +    +  LS G     ++     R    + G       + S     +  Q  L 
Sbjct: 570 QAFQEMAAGRQQPLSAGALADADLIRRAERLLAGAIGAASARVALASAVGRAEVGQPELL 629

Query: 520 LLSDS---VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            + D    V+EYS                 +  RA  AL+  N  L + D +K+ F+  V
Sbjct: 630 RMLDETSHVIEYS---------RRLEQKSAELERATEALSAANVRLMELDRMKDDFLSTV 680

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDA 635
           ++ELR+PLT++   +++L  +    L  +Q Q ++  I   S  L  L+N +LD+A ++A
Sbjct: 681 THELRTPLTSVRALSEILYDTP--ELPEEQRQKFLATIIKESERLTRLINQVLDMAKIEA 738

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKI 694
           G +  + +++ +  L  E   S      +  + +++   +G L   + D  RL+Q+   +
Sbjct: 739 GEIDWHIASLDIAALAREAADSTRQLFRDKGVALELDLPEGNLPPALGDSDRLIQVMVNL 798

Query: 695 LSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQR 751
           LSNA+ F+  +G  V L           +V +NG  I  +  ++VF +F    +A  G+ 
Sbjct: 799 LSNAVKFAPAEGGRVRLSLRPAPHALEVAVDDNGPGIAPEYHEAVFEKFRQVGSAKTGKP 858

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +G GLGL+I    ++  GG + + S+     T   RIP+
Sbjct: 859 QGTGLGLAICRRLVDGMGGRIWVESTPGAGATFRFRIPA 897


>gi|330505537|ref|YP_004382406.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328919823|gb|AEB60654.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 640

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 111/599 (18%), Positives = 213/599 (35%), Gaps = 67/599 (11%)

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA--LEKNFCETVSTLEHGNNK 275
           A+  +           + A      L       R  +       K        +     +
Sbjct: 78  AHAVHADALLEVDNAQEDARFRDNPLVTSAPHIRFYAGVPLHDGKGLALGTLCVIDRQPR 137

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-------ILHNLTVAIAIFDQNRYL 328
                +         +A    +   +  Q     E       +L N   A+ + D    +
Sbjct: 138 QLDDHQRTQ---LQHLAQLTGELFELRLQARRQAEQSAMHQAMLDNAGSAVLVLDPQGRV 194

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              N    +L +     L     +  LLE                  E + +   +    
Sbjct: 195 LRGNPEAQQLLDYPPDDLEGQYLSQLLLE--------------AGQFERLCAASTAGPQS 240

Query: 389 KDTWHLP-NGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
            +      NGQ+L V +          P  G + +  +L+ +   E     L ++  +  
Sbjct: 241 TEGQMRARNGQSLPVRLNLSPIRAEGQPLQGYLLVANDLSQR---EEARQRLQRIAAQLP 297

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
             + + +           ++     ++              +     +R + +     L 
Sbjct: 298 GMVYQYLLRTDGSSCFPYASAGIHDIYGCSPEEAR-----EDAQPVLARLHPDDAATVLS 352

Query: 501 A-----AIITSFDDERKSLQGTLELLSDSVLEYSIIP--LPNAQTMLTFVNVTDSVRAER 553
           A     A +T++  E + L     L+    +E    P  L +  T+        S R   
Sbjct: 353 AITRSAASLTTWQQEYRVLHPQHGLI---WVEGHAAPQRLTDGDTLWHGFISDISER--- 406

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                    ++ ++++N FV  VS+ELR+PLT I G   L+    LG +     Q +E  
Sbjct: 407 ---------KRGEQLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQAMRQMLEIA 457

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            ++S  L +L++D+LD+  + AG M+ +   + L  LL +  ++       + +++++++
Sbjct: 458 QSNSQRLRHLIDDLLDMDKLVAGKMQFDLQPLQLRPLLQQALRNNQPYAERHQVQLQLLA 517

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  +AD QRL Q+ + +LSNA  FS+ G TV L A    G    SV++ G  I ED
Sbjct: 518 SAD-CQVMADAQRLEQVLANLLSNAAKFSAAGQTVELAAGLAQGWVRISVRDYGQGIAED 576

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +F++F         ++ G GLGL+I +  I   GG +   S++   +T    +P 
Sbjct: 577 FKPRIFSKFAQADAGDTRRQGGTGLGLAISKEIIEHMGGRIGFDSTEGQGSTFWLSLPL 635



 Score = 44.2 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 88/282 (31%), Gaps = 31/282 (10%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  L  +  EL E  L+ ++ +   ++ + + D+    V   D  G +L  N   ++  +
Sbjct: 147 LQHLAQLTGELFELRLQARRQAEQSAMHQAMLDNAGSAVLVLDPQGRVLRGNPEAQQLLD 206

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
                  +    S+ L +    +R+ ++S       E      +G +   ++        
Sbjct: 207 YPPDDL-EGQYLSQLLLEAGQFERLCAASTAGPQSTEGQMRARNGQSLPVRLNLSPIRAE 265

Query: 287 -----GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVE 337
                G   +A D+S+      +L         L   +  +    D +    + +    +
Sbjct: 266 GQPLQGYLLVANDLSQREEARQRLQRIA---AQLPGMVYQYLLRTDGSSCFPYASAGIHD 322

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--P 395
           ++               +L  L          +  T    I     S  T +  + +  P
Sbjct: 323 IYGCSPE--EAREDAQPVLARLH-------PDDAATVLSAITRSAASLTTWQQEYRVLHP 373

Query: 396 NGQTLHVIVTSNP----RGGTIW--MFENLTVQVDLETKYNT 431
               + V   + P     G T+W     +++ +   E   N 
Sbjct: 374 QHGLIWVEGHAAPQRLTDGDTLWHGFISDISERKRGEQLQNE 415


>gi|30019163|ref|NP_830794.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29894706|gb|AAP07995.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 896

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|15803750|ref|NP_289784.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 EDL933]
 gi|15833343|ref|NP_312116.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751616|ref|ZP_02776638.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754192|ref|ZP_02779199.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763747|ref|ZP_02788754.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769066|ref|ZP_02794073.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777265|ref|ZP_02802272.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781354|ref|ZP_02806361.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786096|ref|ZP_02811103.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|168800924|ref|ZP_02825931.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208808181|ref|ZP_03250518.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813912|ref|ZP_03255241.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820710|ref|ZP_03261030.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397926|ref|YP_002272680.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327107|ref|ZP_03443190.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795159|ref|YP_003079996.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14359]
 gi|261228221|ref|ZP_05942502.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255077|ref|ZP_05947610.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK966]
 gi|17366312|sp|P58363|ARCB_ECO57 RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|12517831|gb|AAG58344.1|AE005549_1 aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase, sensor for arcA [Escherichia coli
           O157:H7 str. EDL933]
 gi|13363562|dbj|BAB37512.1| aerobic respiration sensor-response protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767463|gb|EDU31307.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014362|gb|EDU52484.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|189001033|gb|EDU70019.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358652|gb|EDU77071.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361737|gb|EDU80156.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366120|gb|EDU84536.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373850|gb|EDU92266.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|189376853|gb|EDU95269.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208727982|gb|EDZ77583.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735189|gb|EDZ83876.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740833|gb|EDZ88515.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159326|gb|ACI36759.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|209757940|gb|ACI77282.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757942|gb|ACI77283.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757946|gb|ACI77285.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|217319474|gb|EEC27899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594559|gb|ACT73920.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. TW14359]
 gi|320189563|gb|EFW64222.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. EC1212]
 gi|326337911|gb|EGD61745.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1125]
 gi|326347480|gb|EGD71205.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1044]
          Length = 778

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|189465235|ref|ZP_03014020.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
 gi|189437509|gb|EDV06494.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
          Length = 390

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 161/417 (38%), Gaps = 37/417 (8%)

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           KE +  + +  E   +   LP+                             E       +
Sbjct: 9   KEELLEIIRKLEEQLENRTLPDSSC------------------------QDEDLERFRKQ 44

Query: 435 VQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
              E +D + + + VF  +   I+L +    +  +          ++++I          
Sbjct: 45  YGKEILDAIPDMLTVFDYNLDYIELLSSPDTNHVEGLSGEDKSHPNLKDIVPESEYRKIR 104

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           ++   +     TS  +     +G +        E  + PL +   +    +VT  V A R
Sbjct: 105 ANMEKVMRTGCTSIGEHSLWFEGEMHHY-----ENLVCPLGDKYLLCMCRDVTSRVNALR 159

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L        ++D +K++F+ ++S+E+R+PL  I+GF+ L+              Y   I
Sbjct: 160 ELAAARVKAEESDRLKSAFLSNMSHEIRTPLNAIVGFSRLVIDPGHEGDKE---DYCNII 216

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S +LL L NDILDL+ +++G ++     + L     E   S   K++   + + +  
Sbjct: 217 EKNSELLLCLFNDILDLSEMESGTLEFVREKVNLYHACLEEYDSHRLKVN-KGVILILDD 275

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +    + DR R++Q+   +LSNA  F+  G  +            F VK+ G  IP +
Sbjct: 276 VDEELCVMGDRMRIMQVLMNLLSNAAKFTPTGE-IHFGYQLRGNIVQFYVKDTGIGIPAN 334

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +F RF    +  Q  G GLGL++    +   GG + + S +   TT    +P 
Sbjct: 335 RVAKIFERFGKINNFAQ--GTGLGLTVSRMLVERMGGRIWVRSGEGIGTTFFFTLPL 389


>gi|162452262|ref|YP_001614629.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161162844|emb|CAN94149.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 2003

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/443 (20%), Positives = 168/443 (37%), Gaps = 37/443 (8%)

Query: 360  RSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
            R+A  L  +L+ +     +   V +S+   +    L  G+ L V+   +  GG I     
Sbjct: 1343 RAARALSSELDPERVVGRLMELVLESAGAQRGVLLLGEGEELSVVARLSVEGGRIET--G 1400

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            L+  +   +    + +     +   +E V V       + +     +          P +
Sbjct: 1401 LSEPLSQSS---EVARTVAHYVARTNEPVVVDDARSDARFAADPHLASRSVLSLLSLPLS 1457

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            H   +       + E         +  +F + R  L   L   +   +E +++       
Sbjct: 1458 HRGRLVGVLYLEHRE---------VPAAFPERRVELLSVLAAQAAIAVENALL------- 1501

Query: 539  MLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                    ++   ER   L    EA  +A + K+ F+  +S+ELR+PL  I+G   +L+ 
Sbjct: 1502 ----YRDLEAKIKERTVELRIAKEAAERASQAKSDFLSSMSHELRTPLNGIMGHAQILER 1557

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +    +     + +  I  SS  LL+L+ND+L LA ++AG M    +   L  L+  V  
Sbjct: 1558 TP--DVPPAWREGLRVIQKSSEHLLSLINDLLHLAKIEAGKMDSVLTEFRLPALVRTVVD 1615

Query: 657  SIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST-----VIL 710
                +     I       G  L +  AD +RL+Q+   +L NA+ F+ +G       V+ 
Sbjct: 1616 LCRVRAEAKGITFSDELRGPALQAVCADEKRLMQVLLNLLGNAIKFTERGGVSLHVEVLE 1675

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
            +         F +++ G  I  +    +F  F        +  G GLGL+I +  +   G
Sbjct: 1676 ETVPAGRMVRFRIEDTGPGIAPEHLSRIFEPFEQVGEQSAKSEGTGLGLAITKKLVQQMG 1735

Query: 770  GHVSISSSDEGVTTINCRIPSKE 792
            G + + S     +     +P  E
Sbjct: 1736 GAIEVQSEVGEGSVFAVTLPLAE 1758


>gi|116871682|ref|YP_848463.1| two-component sensor kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740560|emb|CAK19680.1| two-component sensor kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 610

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++         +S  ++    +  S   +R +L     L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDI-----GDSYQFEDLMEVDGSLTMDRSTLDKPYILRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G   L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREHLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFE-MMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +PE+   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKFEDEIEISIADEGLGVPEEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKSKGTVIKFTLP 600


>gi|24114498|ref|NP_709008.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 301]
 gi|30064547|ref|NP_838718.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 2457T]
 gi|49176326|ref|YP_026207.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|82545553|ref|YP_409500.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           Sb227]
 gi|89109973|ref|AP_003753.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. W3110]
 gi|110807075|ref|YP_690595.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           5 str. 8401]
 gi|157159325|ref|YP_001464688.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|170018540|ref|YP_001723494.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ATCC 8739]
 gi|170082744|ref|YP_001732064.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170683438|ref|YP_001745482.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188492706|ref|ZP_02999976.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|191168636|ref|ZP_03030418.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|193065369|ref|ZP_03046440.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|193070312|ref|ZP_03051255.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194429137|ref|ZP_03061667.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194439214|ref|ZP_03071295.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209920685|ref|YP_002294769.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SE11]
 gi|218555780|ref|YP_002388693.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI1]
 gi|218696915|ref|YP_002404582.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           55989]
 gi|218701979|ref|YP_002409608.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI39]
 gi|218706830|ref|YP_002414349.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMN026]
 gi|238902312|ref|YP_002928108.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|253771956|ref|YP_003034787.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038375|ref|ZP_04872433.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|256018871|ref|ZP_05432736.1| aerobic respiration control sensor protein ArcB [Shigella sp. D9]
 gi|260857337|ref|YP_003231228.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|260869961|ref|YP_003236363.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|291284584|ref|YP_003501402.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406819|ref|ZP_06650745.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|293412581|ref|ZP_06655304.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293416639|ref|ZP_06659278.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|293449543|ref|ZP_06663964.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|298382560|ref|ZP_06992157.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|300817535|ref|ZP_07097751.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300897978|ref|ZP_07116354.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300904402|ref|ZP_07122250.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300926045|ref|ZP_07141867.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300929906|ref|ZP_07145348.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300938126|ref|ZP_07152900.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300948865|ref|ZP_07162930.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|301025888|ref|ZP_07189375.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|301326357|ref|ZP_07219721.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301644924|ref|ZP_07244893.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|307139896|ref|ZP_07499252.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|307313085|ref|ZP_07592711.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309793789|ref|ZP_07688215.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|331643908|ref|ZP_08345039.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331654814|ref|ZP_08355814.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331670037|ref|ZP_08370882.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331679289|ref|ZP_08379961.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331684857|ref|ZP_08385449.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332279959|ref|ZP_08392372.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|83287862|sp|P0AEC3|ARCB_ECOLI RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|83287863|sp|P0AEC4|ARCB_SHIFL RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|40951|emb|CAA37397.1| arcB [Escherichia coli]
 gi|24053684|gb|AAN44715.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 301]
 gi|30042806|gb|AAP18529.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 2457T]
 gi|48994928|gb|AAT48172.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|81246964|gb|ABB67672.1| aerobic respiration sensor-response protein [Shigella boydii Sb227]
 gi|85676004|dbj|BAE77254.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K12 substr. W3110]
 gi|110616623|gb|ABF05290.1| aerobic respiration sensor-response protein [Shigella flexneri 5
           str. 8401]
 gi|157081355|gb|ABV21063.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|169753468|gb|ACA76167.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890579|gb|ACB04286.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170521156|gb|ACB19334.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188487905|gb|EDU63008.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|190901330|gb|EDV61097.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|192927010|gb|EDV81633.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|192956371|gb|EDV86831.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194412862|gb|EDX29154.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194421910|gb|EDX37916.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209757938|gb|ACI77281.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757944|gb|ACI77284.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209913944|dbj|BAG79018.1| aerobic respiration sensor-response protein [Escherichia coli SE11]
 gi|218353647|emb|CAU99866.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli 55989]
 gi|218362548|emb|CAR00172.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI1]
 gi|218371965|emb|CAR19821.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI39]
 gi|218433927|emb|CAR14844.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli UMN026]
 gi|222034927|emb|CAP77670.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LF82]
 gi|226839999|gb|EEH72020.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|238861439|gb|ACR63437.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|242378753|emb|CAQ33543.1| ArcB sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323000|gb|ACT27602.1| multi-sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253979209|gb|ACT44879.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BL21(DE3)]
 gi|257755986|dbj|BAI27488.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|257766317|dbj|BAI37812.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|260447763|gb|ACX38185.1| multi-sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|281602592|gb|ADA75576.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           2002017]
 gi|290764457|gb|ADD58418.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322633|gb|EFE62062.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|291426825|gb|EFE99857.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|291431995|gb|EFF04978.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|291469352|gb|EFF11843.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298277700|gb|EFI19216.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|299879910|gb|EFI88121.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|300358326|gb|EFJ74196.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300403676|gb|EFJ87214.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300417903|gb|EFK01214.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300451670|gb|EFK15290.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|300456889|gb|EFK20382.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300462192|gb|EFK25685.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300529833|gb|EFK50895.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300846921|gb|EFK74681.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301076775|gb|EFK91581.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|306906996|gb|EFN37504.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|308122746|gb|EFO60008.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|309703636|emb|CBJ02976.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli ETEC
           H10407]
 gi|312947767|gb|ADR28594.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313648546|gb|EFS12988.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2a str. 2457T]
 gi|315062516|gb|ADT76843.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli W]
 gi|315137796|dbj|BAJ44955.1| aerobic respiration control sensor protein arcB [Escherichia coli
           DH1]
 gi|315257138|gb|EFU37106.1| PAS domain S-box [Escherichia coli MS 85-1]
 gi|315617017|gb|EFU97627.1| aerobic respiration control sensor protein arcB [Escherichia coli
           3431]
 gi|320186696|gb|EFW61420.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           CDC 796-83]
 gi|320202124|gb|EFW76699.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           EC4100B]
 gi|320640281|gb|EFX09853.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645578|gb|EFX14587.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650888|gb|EFX19345.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656269|gb|EFX24181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320666794|gb|EFX33773.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154425|gb|EFZ40626.1| aerobic respiration control sensor protein arcB [Escherichia coli
           EPECa14]
 gi|323162902|gb|EFZ48737.1| aerobic respiration control sensor protein arcB [Escherichia coli
           E128010]
 gi|323173530|gb|EFZ59159.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LT-68]
 gi|323178614|gb|EFZ64190.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1180]
 gi|323183164|gb|EFZ68562.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1357]
 gi|323376896|gb|ADX49164.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11]
 gi|323941690|gb|EGB37869.1| hsp90-like protein [Escherichia coli E482]
 gi|323946936|gb|EGB42952.1| hsp90-like protein [Escherichia coli H120]
 gi|323961135|gb|EGB56749.1| hsp90-like protein [Escherichia coli H489]
 gi|323966390|gb|EGB61824.1| hsp90-like protein [Escherichia coli M863]
 gi|323970227|gb|EGB65498.1| hsp90-like protein [Escherichia coli TA007]
 gi|324119575|gb|EGC13457.1| hsp90-like protein [Escherichia coli E1167]
 gi|331037379|gb|EGI09603.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331048196|gb|EGI20273.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331062950|gb|EGI34864.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331073354|gb|EGI44677.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331078472|gb|EGI49678.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332090932|gb|EGI96023.1| aerobic respiration control sensor protein arcB [Shigella boydii
           3594-74]
 gi|332102311|gb|EGJ05657.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|332345167|gb|AEE58501.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMNK88]
 gi|332752897|gb|EGJ83282.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-671]
 gi|332765209|gb|EGJ95436.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2930-71]
 gi|332999289|gb|EGK18875.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-272]
 gi|333014521|gb|EGK33868.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-304]
 gi|333014660|gb|EGK34006.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-227]
          Length = 778

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
 gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
          Length = 950

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 7/254 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +
Sbjct: 441 ICVLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE 500

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S     V  ++ SS++LL +++DILD + +++  +K+        +++  +  + 
Sbjct: 501 ---LPSGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNY 557

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL A    G
Sbjct: 558 LSLVVKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAWVAEG 616

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  IP      +F+ F       +   +G GLGL+I E  IN+  G + + 
Sbjct: 617 YLAFRVRDTGVGIPAKELPRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVD 676

Query: 776 SSDEGVTTINCRIP 789
           S     +    RIP
Sbjct: 677 SEPGMGSQFIVRIP 690


>gi|256024215|ref|ZP_05438080.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           4_1_40B]
          Length = 778

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|237745636|ref|ZP_04576116.1| signal transduction histidine kinase [Oxalobacter formigenes
           HOxBLS]
 gi|229376987|gb|EEO27078.1| signal transduction histidine kinase [Oxalobacter formigenes
           HOxBLS]
          Length = 577

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 169/372 (45%), Gaps = 29/372 (7%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR----SLWKTEENRLSPGTHIRNIAA 485
           ++L+    E +  L++G    G +  + L +PA++     L K  E       ++R    
Sbjct: 66  DSLIASLDEILSELAQG---NGKNRLVILHDPAYQALLYQLQKKWEIVKIDIQNVRQGGD 122

Query: 486 TCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               + N    + +   ++++ +D  E+   Q    L+  +++   ++    + +     
Sbjct: 123 PAKLFENSEKHFIVANQVVSAAEDYSEKGIYQTRQWLIGLNIVFIGLVIFLYSYSARQKK 182

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              D + AE A              K+ F+  +S+E+R+P+  IIG T + + S      
Sbjct: 183 LSADLLAAENA-----------SREKSEFLSRMSHEIRTPMNGIIGMTKMARMSVDDK-- 229

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +K    ++ I  SS  LL L+NDILD+A +++G ++L      L  L++ ++     K  
Sbjct: 230 NKLLNSLDKIDFSSRFLLALINDILDMARIESGKVELYNQPFDLLHLVDGIEIMFRQKAV 289

Query: 664 ENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI 720
           +N +  +V + D  +   V D  R+ QI   ++SNA+ F+  G  V+  +KA R +G+ +
Sbjct: 290 DNQVTFRVNTHDLSVPGVVGDELRINQIIINLVSNALKFTPAGGQVMLDIKAHRTSGNAV 349

Query: 721 ---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISS 776
              F + + G  + E+  + +F  F   +    Q  G GLGL+I  + +++  G ++++S
Sbjct: 350 RLEFRISDTGIGMSEEFMQRMFEPFEQASESAMQYGGTGLGLAICHNLVHMMNGTINVTS 409

Query: 777 SDEGVTTINCRI 788
                +     +
Sbjct: 410 KPGNGSQFTVIL 421


>gi|253699184|ref|YP_003020373.1| histidine kinase [Geobacter sp. M21]
 gi|251774034|gb|ACT16615.1| histidine kinase [Geobacter sp. M21]
          Length = 550

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 150/353 (42%), Gaps = 30/353 (8%)

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD-LFAAIITSFDDERKS 513
           RI L N      +    + L      R +  T  +     +G +      IT+  +   +
Sbjct: 193 RISLHN------YSINRDSLLLSYENREMIETLKQAKERVEGLNSQLMEEITARLEAEAA 246

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL-------RKAD 566
           L+G  E L ++++E     L ++        + +  + E+AL +  E L         A+
Sbjct: 247 LRGNQEQL-ENLVEVRTADLVSSNE-QLKKEIEERKQYEQALLQAGERLAVAQRQSEAAN 304

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F+ ++S+E+R+PL   +G   L+    +G   +++ Q +E    S+  L+ ++ D
Sbjct: 305 RAKTEFLANMSHEMRTPLAGALGMIRLVLDMNIG---AEERQLLEMAKRSADSLVRIIAD 361

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685
           +LD + ++AG+M       +L +++    + ++    E  + +    +  +      D  
Sbjct: 362 LLDFSRLEAGVMTFEDKPFLLKEVVRSAVEVVSLVAEEKGLSLSWAVNAAVPEQLRGDEG 421

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA-------ARDNGDFIFSVKNNGSSIPEDMCKSV 738
           RL Q+   +L NA+ F+ +G  + +         A+      FSV++ G  IP D  + +
Sbjct: 422 RLRQVLVNLLGNAVKFTERGG-IEVGIGTFEPLEAQGEQYVEFSVRDTGVGIPADQLERI 480

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+RF         +  G GLGL++    +   GG +   S     +T +  +P
Sbjct: 481 FDRFTQVDSSLTRRHGGTGLGLALTRQIVEKMGGSIWAESVVGSGSTFHFTVP 533


>gi|172035572|ref|YP_001802073.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697026|gb|ACB50007.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 908

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 130/279 (46%), Gaps = 17/279 (6%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E+  + +        F ++ D  R         +AL +    K+ F+  + +E+R+PL  
Sbjct: 223 EFHQLEILITTLSDYFQDLQDLQRKMAQQQASEKALEELSRAKSEFLAMIGHEIRTPLNA 282

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           + G T LL  ++   LN +Q ++V  I  S   LL ++N+ILD + ++A  ++L      
Sbjct: 283 VTGMTGLLLDTE---LNDQQQEFVSIIRNSGENLLTMINNILDFSKIEAQKLELEEEAFE 339

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
           L   + ++ +   ++  + N+ +  + +     + V D  RL QI + ++ NA+ F+  G
Sbjct: 340 LGPCIEDILRLFVSQASKKNLELAYLVESNTPSAIVGDSTRLKQILANLIGNAVKFTDNG 399

Query: 706 STVI------LKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
             VI      +K+  +       +  F+VK+ G  IP D C  +F  F        RR  
Sbjct: 400 EVVIYVNGTPIKSTENEQENPTYELRFAVKDTGIGIPPDRCHRLFQPFSQVDASTTRRYG 459

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +    L GG + + S++   +T N  I +K
Sbjct: 460 GTGLGLAISKRLSELMGGGMWVHSTEGKGSTFNFTIQAK 498


>gi|254249290|ref|ZP_04942610.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
 gi|124875791|gb|EAY65781.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
          Length = 1044

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 159/374 (42%), Gaps = 23/374 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
             +      +    ++    G+A+    DG + L N   R+         S    +  +A
Sbjct: 426 TRRVVESENLNRTIVEAAPSGIALLSLADGAVLLQNDTMRAYDARIAAAPSLAARL--LA 483

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
              +     +   DL   + T  D+   ++   + L+     +  ++       +  F +
Sbjct: 484 RFDASPGASAWQSDLHVTLPTGGDE---TVDLLVNLVRTRYRDADVV-------LCNFSD 533

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T     ER L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+    L     
Sbjct: 534 ITSQKNIERKLDEALRAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGREPLADT-- 591

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + ++ +  +S++LLNL++DILDL+ ++AG M +      L + + +           
Sbjct: 592 -QRERLQTVEGASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPLATA 650

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----F 719
             ++  VI D  L S +V D  R+ QI + ++ NA+ F+ +G   +    RD+ D     
Sbjct: 651 KGLQYDVIVDDALASRYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDADPASPV 710

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V + G  + +    ++F  F         +  G GLGL++ +    +  G + + S+
Sbjct: 711 VIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDVKSA 770

Query: 778 DEGVTTINCRIPSK 791
               +T    +P +
Sbjct: 771 PGEGSTFVVTLPLR 784


>gi|229526741|ref|ZP_04416145.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
 gi|90074862|dbj|BAE87106.1| LuxQ [Vibrio cholerae bv. albensis]
 gi|229336899|gb|EEO01917.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
          Length = 857

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 171/428 (39%), Gaps = 38/428 (8%)

Query: 380 SVYKSSETHKDTWHLPN--GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL---VK 434
             +      ++   L N   + + +   S   G  I+ F+       LE  +  L    K
Sbjct: 300 RWWLQKRIQREIETLMNYTHKLMELDTKSQFAGSKIYEFDYFG--RTLEQSFRRLANKEK 357

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
              +  +       ++   GR+   NP+ +               I+ +      ++   
Sbjct: 358 QFEDLFNFALSPTMLWNTSGRLIRMNPSAQ---------------IQFLREDAQNHFLFE 402

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLTFVNVTDSV---R 550
                    IT           T E+    V  +++ P+    Q +       D      
Sbjct: 403 ILERQLLPTITKAAQGNNPSDVTTEV-DGRVYRWNLSPIMVEGQIISIITQGQDITTIAE 461

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +    LN +Q ++V
Sbjct: 462 AEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PLNDEQREHV 518

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             + +S   LL ++NDILD + ++ G  ++  +   L +L+  + +      HE  + + 
Sbjct: 519 AVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKGLELV 578

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKN 725
           V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++     GD     +  V +
Sbjct: 579 VNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVIQVVD 637

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E     +F  F+       R   G GLGL+IV S + +  G + +SS     T 
Sbjct: 638 TGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTR 697

Query: 784 INCRIPSK 791
              ++P +
Sbjct: 698 FEIQLPIE 705


>gi|83814809|ref|YP_446154.1| putative two-component system sensory/regulatory protein, putative
           [Salinibacter ruber DSM 13855]
 gi|294508078|ref|YP_003572136.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|83756203|gb|ABC44316.1| putative two-component system sensory/regulatory protein, putative
           [Salinibacter ruber DSM 13855]
 gi|294344406|emb|CBH25184.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 942

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/630 (17%), Positives = 242/630 (38%), Gaps = 52/630 (8%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVFQKAIGESRKLFKEEIKKR 251
            ++ L DS +  +   D  GDI+  N   +     E E IV +          +   ++ 
Sbjct: 323 TYEELKDSAEDAIVIADADGDIIDWNPGAEAMFGYEKEAIVGRPIETIMPDRHRAPHRRG 382

Query: 252 MISSSALEKNFCETVSTLEHG-NNKSYKI-VRVLNSFGEA-------GIAIDVSK----E 298
           M       +      +    G +   +++ V +  S  EA        I  D+++    E
Sbjct: 383 MERVRETGRGRFLGETVELEGLHQDGHEVPVELALSSWEADRERFFGAIIRDITERKNAE 442

Query: 299 ITVNDQLTHTYEILHNLTVAIAI---FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + ++      +  +L   +      D   ++   N +F + + +  A  A     + +
Sbjct: 443 QALREERDRFETLFESLPTPVVRCVAQDDGVFVTDANPAFEDTFGL-AATEAVGAEINHI 501

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNG-QTLHVI-VTSNPRGG- 411
           L        +PE+ + +  ++    V +S E   +       G +   V  ++  P  G 
Sbjct: 502 L--------VPEKGHDRA-RDFDRRVLESGEVRAEVQRTTAEGMREFQVQAISRRPDEGP 552

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
                ++ ++T +   E + +          +H  +   +  PDG +  +N         
Sbjct: 553 PEIYAIYTDITERKQRERRLDA-------IFNHTYQFTGLMEPDGTMIEANDTALRFGGL 605

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +   +      +   A       +     +  A    F    + +QG  E   D ++++S
Sbjct: 606 DREDIVGTPIWKTHWAQTGEDSKQRLREAVERAAEGEFVRYERPIQGGDE---DRIIDFS 662

Query: 530 IIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I P+ +A       +    ++T+    E  L    E   +A  +K++ + ++S+ELR+PL
Sbjct: 663 IRPVTDADGQVELLIPEARDITELKWREETLRAAKEEAEEASRLKSAVLANMSHELRTPL 722

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T+I+GF + +            S++   I+ S   LL   ++IL+L+ ++A         
Sbjct: 723 TSILGFAEAIDDEASDGAGP-VSRFASLIAKSGERLLRTFDNILNLSRLEAEQQNEPAEP 781

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + +      V   I  +   ++I ++           A   ++  +   +LSNA+ ++  
Sbjct: 782 VDVAAAARSVADEIQDRAEADDIALRTEVGSATMRTRAPADQVPIVLRHLLSNAITYTEA 841

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G TV L+  R  GD +  V++ G  +  D   ++F  F   +     +  G GLGL++V+
Sbjct: 842 GGTVWLRVGRAGGDVVVEVEDTGIGMDPDEVPALFEPFRQASEGFGREYEGTGLGLAVVQ 901

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             ++  GG V +++ +   T +   +P  E
Sbjct: 902 RAVDRMGGTVDVATEEGEGTCVTVGLPGME 931



 Score = 54.2 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 82/210 (39%), Gaps = 14/210 (6%)

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPR---GGTIW- 414
           R   ++P+    +  +    ++ + S+   +T +  P+G+ +  +  S P    G T++ 
Sbjct: 246 RCLERIPDPYQREIERSIETAIDEQSDWEFETPFDPPDGERIWALGASTPEQREGETVFN 305

Query: 415 -MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +  ++T + + E +  T  +++    D   + + +   DG I   NP   +++   E  
Sbjct: 306 GVILDITERKEAERRRRTYEELK----DSAEDAIVIADADGDIIDWNPGAEAMFG-YEKE 360

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G  I  I     R  +      +       F  E   L+G  +   +  +E ++   
Sbjct: 361 AIVGRPIETIMPDRHRAPHRRGMERVRETGRGRFLGETVELEGLHQDGHEVPVELALSSW 420

Query: 534 PNAQTML---TFVNVTDSVRAERALTEKNE 560
              +         ++T+   AE+AL E+ +
Sbjct: 421 EADRERFFGAIIRDITERKNAEQALREERD 450


>gi|82778524|ref|YP_404873.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae Sd197]
 gi|309785538|ref|ZP_07680169.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
 gi|81242672|gb|ABB63382.1| aerobic respiration sensor-response protein [Shigella dysenteriae
           Sd197]
 gi|308926658|gb|EFP72134.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
          Length = 778

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|332702019|ref|ZP_08422107.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552168|gb|EGJ49212.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 522

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 151/373 (40%), Gaps = 28/373 (7%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             + V    ++H    +A   PD   + +N A+          +    H           
Sbjct: 10  EELAVLRALVEHTEVQLAFLAPDFTFRYANKAYVRGCGYSREEIMGRNHFE--------L 61

Query: 491 YNESDGWDLFAAIITSFD----DERKSLQGTLELLSDSVLEYSIIPLPNAQTM-----LT 541
           + +++   +F  +  +        +  +  +      +  ++ + P+  +         +
Sbjct: 62  FPDAENETIFRKVRDTGQAVSFKAKPFVYASQPERGTTYWDWRLAPVAGSDGNLLGLAFS 121

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +VT+ VR E AL    +   +A   K+ F+  +S+ELR+PL  ++G T+L   S+   
Sbjct: 122 LTDVTERVRTELALRRSEQEAEEASRAKSEFLASMSHELRTPLGGVLGMTELALMSE--- 178

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            ++    Y++ +  S   L +LVND+LDL+ ++A  ++L      L   L      +   
Sbjct: 179 PSAAVRTYLQMVLRSGQALRDLVNDLLDLSRIEARKLELESVDFDLRAELALALDPLILD 238

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----N 716
              N + ++      + + V  D  RL Q+ + ++SNA+ F+ +G  + +    D     
Sbjct: 239 ARANGLCLRHSVAPAVPAMVRGDSGRLRQVITNLVSNALKFTEQGG-ITVAVESDTTGAP 297

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
               F V + G  I  D  ++VF+ F    +     R G+GLGL+I    ++L GG +  
Sbjct: 298 DLLRFRVTDTGIGIAADQLEAVFDTFRQLRDKDGRTRGGMGLGLAICRRLVDLMGGRLWA 357

Query: 775 SSSDEGVTTINCR 787
            S     +     
Sbjct: 358 ESEPGKGSCFQFT 370


>gi|304379967|ref|ZP_07362696.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|304341547|gb|EFM07457.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
          Length = 608

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 155/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 286 RIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 343

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 344 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++      +M   +         K      D  ++ Q+F  +++
Sbjct: 443 SDQINKEIIDFNMFINKIIN--RHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 38.0 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +           D +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGM--------AKEDII 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++   +  +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|167034015|ref|YP_001669246.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas putida GB-1]
 gi|166860503|gb|ABY98910.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas putida GB-1]
          Length = 1371

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/487 (18%), Positives = 184/487 (37%), Gaps = 11/487 (2%)

Query: 307  HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
            +   ++ +  +A    D+N ++++       ++ I         +   LL+         
Sbjct: 748  YLSNLIASTQIATVFVDRNLHIRWFTPGATAIFSI-----LPVDTGRSLLDITHRLEYPG 802

Query: 367  EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
               + +   E   ++ +        W+L   + L    +     GT+  F ++T     E
Sbjct: 803  LADDARAVIERETTIEREVIGQDQHWYLA--RLLPYRASEQNVDGTVLTFIDITESRAAE 860

Query: 427  TKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             +     +      +   +  + +    G I   N     ++   ++ +  G H   I  
Sbjct: 861  ERLRQGEERMRLVAESTHDFAIILLDEQGLIIDWNTGAALIFGYAKDEVL-GLHYALIFT 919

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
               R   E +     A       DER  ++        S     +        +    ++
Sbjct: 920  EQDRENGEPERELRAARQHGRGQDERWHVRKDGSRFYCSGEVSRLKGSSLRGYVKIARDL 979

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            T   R +   +++    + +  +K+ F   +S+EL+ PL  I    D+L+     +    
Sbjct: 980  TGHKRLQDEQSKRLAESQSSSHMKDEFFAVMSHELKHPLNLIQLNADILRRIPSVTSTGM 1039

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             S+ V  I  + T    +++D+LD+A +  G +KL    + L  +L  +      +    
Sbjct: 1040 ASKAVNVIREAVTSQARIIDDLLDVARIRTGKLKLKTQPVDLCAVLQGICAVACNEQRGR 1099

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            ++R+ + +DG+     AD  R+ QI   +L+NA+ FS     ++L+  R +      V +
Sbjct: 1100 SVRLTLPADGEPVLVEADSTRVEQIIWNLLNNALKFSPADGDILLRLTRQDEQARLEVID 1159

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSD-EGVTT 783
             G  + ED  + +F  F      G  R G+G+GLS+V   +  HGG VS+ S       T
Sbjct: 1160 QGIGLAEDSLEGIFELFNQATPTGHGREGLGIGLSLVRQLVEAHGGAVSVESPGVGQGCT 1219

Query: 784  INCRIPS 790
                +P 
Sbjct: 1220 FVITLPL 1226


>gi|315122143|ref|YP_004062632.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495545|gb|ADR52144.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 806

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 162/360 (45%), Gaps = 9/360 (2%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             ++  S+G+A+   DG I  +N A  +L+      +                 N     
Sbjct: 448 SILESTSDGIAIVNRDGTILSTNRAIGTLFDYPAQDIIGKPFKIFFTHDNQIIMNHCMAE 507

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALT 556
                +  + +          +L+S   L  ++  LP +      ++     + E+  L 
Sbjct: 508 ISSIDLGKTLEKTAVGCTREGKLIS---LRITMKKLPFSACYCLILHDISEWKQEKNELY 564

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615
              +   K +  KN F+  VS+E+R+PLT IIGF++++K  + G + + +  +Y  YI  
Sbjct: 565 HAKKMAEKENSHKNDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPVGSPRYIEYANYIDR 624

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S  ++L++VND+LD++ +++G M  ++ ++ LN+ ++E    +    +E  I ++     
Sbjct: 625 SGNLVLDIVNDLLDISKIESGKMNFHFESVSLNETISEAISLMELYANEKRILVRTSFSN 684

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDM 734
            +    AD + + QI   ILSNA+ F+  G  +++  A   N + +  VK+ G  + +  
Sbjct: 685 DIPPIFADLRSIKQIALNILSNAIHFTPSGGQIVISTAYTRNKEVVLRVKDTGIGMTDYE 744

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI-PSK 791
            +     F    +  Q R  G GLGL + ++ ++ + G  S+ S+    T I     P K
Sbjct: 745 LEKAMKPFGQIPNSQQVRGEGTGLGLPLTKAMVDANMGKFSVFSTPSKGTLIEIIFTPQK 804


>gi|300918972|ref|ZP_07135527.1| PAS domain S-box [Escherichia coli MS 115-1]
 gi|300413914|gb|EFJ97224.1| PAS domain S-box [Escherichia coli MS 115-1]
          Length = 778

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLIHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|229172215|ref|ZP_04299779.1| hypothetical protein bcere0006_13290 [Bacillus cereus MM3]
 gi|228611203|gb|EEK68461.1| hypothetical protein bcere0006_13290 [Bacillus cereus MM3]
          Length = 591

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + +  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEVELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N    F V+++G
Sbjct: 463 ALTVDFQNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTINNGLTFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKITVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|320535487|ref|ZP_08035593.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Treponema phagedenis F0421]
 gi|320147679|gb|EFW39189.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Treponema phagedenis F0421]
          Length = 514

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 164/368 (44%), Gaps = 27/368 (7%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           + I H S    +   +G     N A  +L        +          +   ++NE    
Sbjct: 10  DYISHSSFACMIVTANGIPLAWNRAAENLLPQYFGTGNAKQ------KSIFDFFNECGIT 63

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQTMLTFVNVTDSVRAERAL 555
           ++F  +  S D     +   +E +S S  ++  ++    +    +   ++T   + ++ +
Sbjct: 64  NIFQKLTESTD-----VPIVIEWMSPSNKDFKATLEKQQDNNYFIILNDITQQKQHDKLV 118

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             + E   K+ +I   F+ +VS+++R+P+  IIG  +LL+T+K   L+ +Q +Y+  I+ 
Sbjct: 119 QSEKEETIKSKKIHKQFLANVSHDIRTPIQTIIGMMELLRTTK---LDQEQKEYIRQINF 175

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+ ILL LVNDILD + ++ G M+       L  L+      IA + H+  + I +    
Sbjct: 176 SAEILLELVNDILDFSKLEVGSMQFENIPFDLVSLMESSIDFIAIEGHKKGLEILLNMSP 235

Query: 676 KL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGD------FIFSVKNN 726
            L   F+ D  RL QI   ++ NA+ F+ KGS    + +A   + D        F + + 
Sbjct: 236 ALNPYFIGDPSRLKQILLNLMKNAVKFTEKGSVTVDVFEAELPDKDGKAMPALYFEIADT 295

Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I ++  + +F  F     +   +  G GLGL+I ++ I +  G + +  +    +  
Sbjct: 296 GIGITDEQKEKLFTVFYQTEASVSRRFGGTGLGLAISKNIIKMLNGEIGVKDNKPHGSIF 355

Query: 785 NCRIPSKE 792
             ++P  +
Sbjct: 356 WFKLPMMQ 363


>gi|260771270|ref|ZP_05880197.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
 gi|260613867|gb|EEX39059.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
          Length = 933

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/319 (23%), Positives = 141/319 (44%), Gaps = 14/319 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I ++     R         +   +    D  +K +      LS+  +E          
Sbjct: 201 RPITHMKNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATS 260

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT
Sbjct: 261 DLRETLEQLEIQNVE--LDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT 318

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L + Q+ Y++ I  S+  LL ++NDILD + ++AG + L        + L EV  
Sbjct: 319 Q----LTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVN 374

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
             AT  HE  + I +  D K+ +  V D  R+ Q+ + ++ N++ F+ +G+  + ++   
Sbjct: 375 LQATSAHEKGLEITLKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRS 434

Query: 715 DNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
              D +   F V++ G  I E     +F  F         +  G GLGL I +  ++  G
Sbjct: 435 QRDDVVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMG 494

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +S++S     +T    +
Sbjct: 495 GEISLTSRLHQGSTFWFTL 513


>gi|325981529|ref|YP_004293931.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
 gi|325531048|gb|ADZ25769.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
          Length = 683

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 149/375 (39%), Gaps = 15/375 (4%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             + K                 G+A+   + G+    N A           L   T+   
Sbjct: 292 KFQQKERDNEARLKALFAISPIGIALNDYETGKFIEVNDALLVPTGYTREELLNLTYWDI 351

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT---LELLSDSVLEYSIIPLPNAQTM 539
                +    +            S+  E     G+   ++L    + + S   L      
Sbjct: 352 TPKDYAIQEAQQLESMQVTGSFCSYKKEYIRKDGSHYPVQLYGIVIYDVSGRKL----IW 407

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T+   AE +L        +A++ K+ F+  +S+ELR+P+  I+GF+ LL+   L
Sbjct: 408 SMVEDITERKAAELSLISARYEAERANKAKSEFLSSMSHELRTPMNAILGFSQLLE---L 464

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+ +   YV+ I ++   LL L++++LDLA +++G + L    I +  ++ E    + 
Sbjct: 465 EGLDDRHLTYVKGIKSAGVHLLALIDEVLDLAKIESGRIDLQPEWIDICTVVEECINLVK 524

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--G 717
            +    +I++   S         DR R  QI   ++ NA+ ++ KG  V ++    +  G
Sbjct: 525 IQADGQDIKLT-HSGMADKVLYTDRIRFKQIILNLIHNAIKYNRKGGWVHIELKNSDNPG 583

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISS 776
                V ++G  I  +    +F  F      G    G G+GLS+    I + GG + + S
Sbjct: 584 YLKIIVIDSGIGIAANRLTQLFQPFNRLDAAGSAIEGTGIGLSLTRRIIEMMGGRIGVES 643

Query: 777 SDEGVTTINCRIPSK 791
                +T    +P++
Sbjct: 644 ELGVGSTFWFELPAR 658


>gi|182412655|ref|YP_001817721.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839869|gb|ACB74121.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 682

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 141/373 (37%), Gaps = 34/373 (9%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR---------YYNESDG 496
           GV V    G +   NP F        N L  G  +  +    +              +  
Sbjct: 21  GVLVTDASGHVTWLNPRFTEQTGYPANELE-GRRLDVVVRLLAPDSGVAAVVARALAAGE 79

Query: 497 WDLFAAIITSFDDERKSLQ---GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
              F     S D     +Q     + L +     + ++     +    +  +  +  A  
Sbjct: 80  PRSFTVAQASRDGRETWMQLALAPVVLRNGRKQGFVLVQDDLTEKREHYAMLRQANAAME 139

Query: 554 ALTEKNEALRKA-----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            L  + E                ++ K++F+  +S+E+R+PL  +IG T +L+ ++   L
Sbjct: 140 DLNTQFEHAIDRAQQLAMEAAVANQAKSAFLAMMSHEIRTPLNGVIGMTGVLEATE---L 196

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +Q + +  I  S   LL +VND LD + ++AG ++L      L     E  + +A K 
Sbjct: 197 DDEQRECLRTIKMSGEALLAVVNDTLDYSKIEAGRLELEQVDFDLRGCAEEAAELLAGKA 256

Query: 663 HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD-- 718
               + +    ++      + D  RL QIF  +L NA+ F+  G  V+ ++    +G+  
Sbjct: 257 FAKKLELVCDVAEDAPRRIIGDPVRLRQIFVNLLGNAVKFTPAGEIVLQIRVLEFDGEAY 316

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
                V++ G  I  D    +F  F        R   G GLGL+I +    L GG + + 
Sbjct: 317 ALQLGVRDTGIGIAADKQHRLFQSFSQVDSSTTRQYGGTGLGLAISKRLAELMGGTMWVE 376

Query: 776 SSDEGVTTINCRI 788
           S     +     I
Sbjct: 377 SEVGRGSAFLFTI 389


>gi|149174846|ref|ZP_01853470.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846183|gb|EDL60522.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 788

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 142/282 (50%), Gaps = 13/282 (4%)

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            L  + EL++   +E+ I      +            R    L    +   KA  IK+SF
Sbjct: 342 ELSQSAELIASGNVEHRISIDSQDEIGRLAETFN---RMVEDLVIAQQDAEKASHIKSSF 398

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+T I+GF +++K     + + + S++++ I  +   LL L+NDILD++ 
Sbjct: 399 LANMSHEIRTPMTAILGFAEIMKQR---NDDPEMSRHIDTIRKNGEYLLELINDILDVSK 455

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           ++A  +++      L +LL++VK  +  +  +  + + V  DG +  ++ +D  RL QI 
Sbjct: 456 IEADKLEVEAIHCSLIELLDDVKTLMEIRAIDRGLDLSVKIDGSIPRWIQSDPVRLRQIL 515

Query: 692 SKILSNAMDFSSKGST--VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +LSNA+ F+ +G    ++  ++ D  +    F V ++G  + ++    +F  F+    
Sbjct: 516 INLLSNAIKFTRQGHVQLIVTASSIDTNEPVIQFDVIDSGIGMTDEQISRLFQPFMQADS 575

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              R   G GLGL+I +   ++ GG +S++S     TT +  
Sbjct: 576 STTRQYGGTGLGLTICKRLTHILGGEISVNSEYGNGTTFSVT 617


>gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1361

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 116/237 (48%), Gaps = 11/237 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A   K+ F+ ++S+E+R+P+  IIG T     +    L ++Q +Y+  + +S+ 
Sbjct: 728 KEAAEAASRAKSDFMANMSHEIRTPMNGIIGMT---DLTLDTDLTAEQREYLTMVQSSAG 784

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++NDILD + ++AG ++L+ +   L + L +  +++A + H+  + +       + 
Sbjct: 785 SLLTIINDILDFSKIEAGRLELDQTEFSLRNHLYDTLKTMAWRAHQKGLELVCDIAPDVA 844

Query: 679 SF-VADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFI--FSVKNNGSSIPE 732
              V D  RL QI + ++ NA+ F+++G  ++   +   R N   +  F+V + G  IP 
Sbjct: 845 DILVGDPGRLRQIVTNLVGNAIKFTAEGEVILAVDIDERRSNNVIVIHFTVTDTGIGIPA 904

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +    +F  F         +  G GLGL+I    + L GG +   S+    +     
Sbjct: 905 EKLHLIFEAFSQADGSITRKYGGTGLGLTISTRMVELMGGKLRAESTPGLGSKFEFT 961


>gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus
           MO6-24/O]
 gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus
           MO6-24/O]
          Length = 928

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNG 727
            D ++    V D  R+ Q+ + ++ N++ F+ +G+  V ++    +G   D  F VK+ G
Sbjct: 392 IDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSLDLQFMVKDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1821

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 30/321 (9%)

Query: 494  SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             +  +         ++ +K+LQ +   L +         L   Q     V  T+   A +
Sbjct: 1288 QELTEQLRERSAELENRQKALQASNAELEEKA------ELLAQQNRDIEVKNTEIEEARQ 1341

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ E I
Sbjct: 1342 VLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAAGNLSPKQVEFAETI 1401

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V  
Sbjct: 1402 HGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRV 1461

Query: 674  DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KA 712
              +L  +   D QRLLQ+   +LSNA+ F+  G+  ++                      
Sbjct: 1462 SPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPQSIREQLLEAGSL 1521

Query: 713  ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +GD I FSV + G  I     + +F  F         +  G GLGLSI      L G
Sbjct: 1522 RDPDGDLIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLG 1581

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G +  +S     +T    +P 
Sbjct: 1582 GEIHAASEPGRGSTFTLYLPL 1602


>gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
 gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
          Length = 553

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +E K+ F+ H+S+E+R+PL  I+G TD+L  ++   LN  Q ++++ I  S   LL ++N
Sbjct: 186 NEAKSQFLAHMSHEIRTPLNGILGLTDILAQTQ---LNENQLEFIKTIRHSGEALLAIIN 242

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           DILD + ++AG ++L      L  L ++++    +++ +  ++  +  D  +  F+  D 
Sbjct: 243 DILDFSKIEAGKLELESIDFSLPTLCDDLEGLFISQVQDKGLQFDINLDPNIPEFLNGDP 302

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNR 741
            R+ Q+   ++SN++ F+ +G  V L   +         F V ++G  I E+    +F  
Sbjct: 303 LRIKQVLLNLISNSLKFTHEG-YVKLDIRQSQATPLVLEFKVSDSGIGISEEKQDQLFKP 361

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F        R   G GLGL I +  + L GG++ + S  +  +T    +
Sbjct: 362 FTQVDSSTTRKYGGTGLGLQISQRLVQLMGGNIRLHSQVDKGSTFIFDL 410


>gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6]
 gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus
           CMCP6]
          Length = 928

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNG 727
            D ++    V D  R+ Q+ + ++ N++ F+ +G+  V ++    +G   D  F VK+ G
Sbjct: 392 IDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSIDLQFMVKDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|257485912|ref|ZP_05639953.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013483|gb|EGH93539.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 917

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|227820916|ref|YP_002824886.1| predicted sensor histidine kinase protein with ATP-binding domain
            [Sinorhizobium fredii NGR234]
 gi|227339915|gb|ACP24133.1| predicted sensor histidine kinase protein with ATP-binding domain
            [Sinorhizobium fredii NGR234]
          Length = 1117

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 114/576 (19%), Positives = 219/576 (38%), Gaps = 16/576 (2%)

Query: 225  NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY---KIVR 281
             T  E   F++   +    F E            ++           G+ +S        
Sbjct: 544  LTRGEQAAFREIARQLGAQFSETTPPAAADEDG-KRPVDAASQAEAAGDMESLSSEDATA 602

Query: 282  VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                    G              +  + EIL  L VA+ I   +  L   N  F+ L   
Sbjct: 603  ARQEETMPGAG--DEAPPAPRGGVGMSSEILDRLPVALLIHHGDE-LLHANPEFLRLTGY 659

Query: 342  D-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
              L         + L  +   + +          + N      S+  H   W   +   L
Sbjct: 660  RKLEAFQQAGGLEALFAYGAESGEHEPDGTMTLVRANGPLAPVSAHLHSIQWEGRSALML 719

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +   +           + +     E +    +      ++  ++GV V G DG I+  N
Sbjct: 720  ALAPAAARAADMPSAGADASA--GGEARLRMEIDELRSILETATDGVVVLGQDGDIRTMN 777

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             +  +L+  +E+ +  G     + A  S+         L    + S  ++ +   G    
Sbjct: 778  GSASALFNYDEDEMR-GKPFAALFAHESQKAVIDYLQGLSGHGVASVLNDGREAIGREAG 836

Query: 521  LSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                 L  +I  L ++        ++T   R E  L     +   A+  K  F+  VS+E
Sbjct: 837  GGFLPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRSAETANAHKTEFLARVSHE 896

Query: 580  LRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            +R+PL  IIGF+D++ +   G + N +  +Y   I  S   +L++VND+LD++ ++AG M
Sbjct: 897  IRTPLNAIIGFSDMMASEHFGPIGNPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEM 956

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            +L++S + LN+ ++E    +  + +   + I+    G +   VAD + + QI   IL+NA
Sbjct: 957  ELDFSAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADGRSIKQIALNILANA 1016

Query: 699  MDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
            + F+  G  +++  + + NG  I  +++ G  +  +        F      G++R  G G
Sbjct: 1017 IRFTPSGGQIVVSTSYETNGSVILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGEGTG 1076

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            LGL + ++    +     ISS+    T +    PS+
Sbjct: 1077 LGLPLTKAMAEANRAQFGISSAPNEGTLVEISFPSQ 1112



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/273 (9%), Positives = 76/273 (27%), Gaps = 29/273 (10%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
                + +   + D L   +       ++L AN  + + T    +   +  G    LF  
Sbjct: 619 APRGGVGMSSEILDRLPVALLIHHGD-ELLHANPEFLRLTGYRKLEAFQQAGGLEALFAY 677

Query: 247 EIKK---------RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG------EAGI 291
             +           ++ ++         + +      +S  ++ +  +         AG 
Sbjct: 678 GAESGEHEPDGTMTLVRANGPLAPVSAHLHS-IQWEGRSALMLALAPAAARAADMPSAGA 736

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP- 350
                 E  +  ++     IL   T  + +  Q+  ++  N S   L+  D   +   P 
Sbjct: 737 DASAGGEARLRMEIDELRSILETATDGVVVLGQDGDIRTMNGSASALFNYDEDEMRGKPF 796

Query: 351 ----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
               +++     +     L          +   ++ + +        +  G+        
Sbjct: 797 AALFAHESQKAVIDYLQGLSGHGVASVLNDGREAIGREAGGGFLPLFMTIGRL------- 849

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           +   G   +  ++T     E +     +     
Sbjct: 850 SSSNGYCAVIRDITQWKRTEEELRNAKRSAETA 882


>gi|332141097|ref|YP_004426835.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551119|gb|AEA97837.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1236

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 162/400 (40%), Gaps = 32/400 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLS---EGVAVFGPDGRIKLSNPAFRSLWK 468
              +F   + + ++E     L KV+GE++  ++   + +      G++K  N A  SL+ 
Sbjct: 344 VALLFFYRSNRKNIE-----LAKVRGESVAIVAISKDAIFSVDAFGKVKSWNMAAESLFG 398

Query: 469 TEENRL--SPGTHIRNIAAT-CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                +     +  + ++         +    + F       +     L  T   +    
Sbjct: 399 IPSQVIINQHFSSFKPLSPLGLETVLTKGGKQETFTTPYIDGEKNEHKLLITASTIWGDN 458

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAE-----------RALTEKNEALRKADEIKNSFVQ 574
            ++S + +                R             + L +  E  RKA  +K+SF+ 
Sbjct: 459 SQFSGVAVVIRDVTDEHKAKDAIERVNFKLEEKVVSRTKELMKATEEARKASSVKSSFIS 518

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  ++G   LLK      LN K  Q V  +  S   L  L+ND+LDL+ ++
Sbjct: 519 NISHEMRTPLNGVVGSLSLLKRQ---PLNDKAEQLVSMMEISCNNLSVLINDVLDLSKIE 575

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSK 693
           AG + +N+       L+  + +  A K     + + V + G       +DR RL Q+ S 
Sbjct: 576 AGKLDINHQLFEPLTLIESLAKVFAVKAATKGLELIVDTTGLPRVEINSDRHRLNQVLSN 635

Query: 694 ILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           +L+NA+ F+ KG   +  A  +N        FSV + G  I  +    +F  F       
Sbjct: 636 LLNNAIKFTEKGHIQLNAALYENDAGLQQLHFSVSDTGVGIAPESQPKLFTAFTQADASV 695

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             Q  G GLGLSI +    L GG ++  S  +  +T +  
Sbjct: 696 ATQYGGTGLGLSICKQLTQLLGGDITFKSVVDVGSTFSFY 735


>gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016]
 gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 928

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNG 727
            D ++    V D  R+ Q+ + ++ N++ F+ +G+  V ++    +G   D  F VK+ G
Sbjct: 392 IDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSLDLQFMVKDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|281611|pir||B41863 two-component regulatory protein lemA - Pseudomonas syringae
          Length = 929

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 282 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 338

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 339 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 398

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 399 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 458

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 459 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 518

Query: 787 RI 788
            +
Sbjct: 519 SL 520


>gi|309778817|ref|ZP_07673590.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
 gi|308922525|gb|EFP68149.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
          Length = 683

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 153/379 (40%), Gaps = 26/379 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           T+     +     +      ++++  D      N    +        L P   +      
Sbjct: 158 TQQRLSQQRLLAALQASP--ISLYDVD------NTMHFTWVHNPVFGLQPEQLLGRTVRE 209

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLT 541
                  S   +    +I +    R             V +  ++PL +           
Sbjct: 210 VFGRRAASRLTEAGQRVIATGTPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNA 269

Query: 542 FVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +++++  +AE        A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL
Sbjct: 270 VIDISERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLL 329

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                    +   + +E I  S+   ++L++D+LD++ + +G + L    + L D+L   
Sbjct: 330 NMRAYD--EAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEVGPVDLADVLERA 387

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +++I     + NI I       +     D  RL Q+F  +L+NA+ F+ +G  + L    
Sbjct: 388 RETIEPMARQKNITIDTEF-LPVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHP 446

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
                + +V++ G  I       +F+RF      +  +  G+GLGL+I +  + LH G +
Sbjct: 447 SPEGVVATVRDTGIGIEPAFLPHIFDRFQQADLSNTRRHGGLGLGLAIAKQLVELHHGRI 506

Query: 773 SISSSD-EGVTTINCRIPS 790
           + +SS  +  TT+   +P 
Sbjct: 507 TAASSGADRGTTMAVSLPL 525


>gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431]
          Length = 933

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|808104|gb|AAA82924.1| regulator of multiple functions [Pseudomonas tolaasii]
          Length = 909

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L+ +   Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRHVDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 + V D  RL QI + ++SNA+ F+ +G+ V      D  +       SV++ G 
Sbjct: 387 YRDTPLAVVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFTEADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|301053116|ref|YP_003791327.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375285|gb|ADK04189.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
 gi|324325593|gb|ADY20853.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 591

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 165/373 (44%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|295690287|ref|YP_003593980.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432190|gb|ADG11362.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 672

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A  +K  F+ ++S+ELR+PLT ++GF  L++      L+++   YV+ ++++   L 
Sbjct: 296 AEEAAHVKADFLANMSHELRTPLTAVLGFAQLVERQP--ELSAETRAYVQRVTSAGKALR 353

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             +NDILD + ++AG + +    + + +L  E     A +  E  + +++     L   +
Sbjct: 354 ATINDILDFSKLEAGQVDIKPQPMSVAELTREAVDMFAAQAREKGVLLRLADLSDLPLLI 413

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            AD  RL Q+   ++ NA+ F+  G   V  +        +F V + G  +  D  K +F
Sbjct: 414 EADPDRLRQVLLNLIGNAVKFTEVGEIAVQARLDARADHIVFEVSDTGPGMSADQSKRLF 473

Query: 740 NRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF         +  G GLGL+I +  +   GG + + S     +     IP+
Sbjct: 474 QRFSQVDAGAARKHGGTGLGLAICKGLVEAMGGSIGVDSRQGQGSRFWFTIPA 526


>gi|258620901|ref|ZP_05715935.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM573]
 gi|258586289|gb|EEW11004.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM573]
          Length = 785

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQLELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  +     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDG-----RKSFFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L S V  D  RL Q+   ++SNAM F+ +G  V  + A  D   
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQY 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            D    V++ G  IPE+  + +F  +             G G+GL++    I L GG +S
Sbjct: 432 ADITIEVEDTGIGIPEEEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 45.7 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS----- 267
           +    N + ++ T   G    + +G +   ++++EI + ++ +     N    ++     
Sbjct: 176 EFSGCNRAMEELT---GKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKSFFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|228957374|ref|ZP_04119133.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802323|gb|EEM49181.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 896

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSYDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|148255785|ref|YP_001240370.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407958|gb|ABQ36464.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 772

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 157/396 (39%), Gaps = 38/396 (9%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G +++ ENL  Q+  E +  T+  +  E  ++ +  +     +GR+  +   F  + +  
Sbjct: 221 GNVFL-ENLKAQIRHERQNETISLLLKEFQENAASWLWQTDAEGRLIDAPQRFADVAQLP 279

Query: 471 ENRLSPGTHIRNIAATC-----------SRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            ++L     +  +   C            R        ++   ++ +   ER+    T  
Sbjct: 280 LDQLKGERLVDTLEYLCPTDTATLATFADRMARRLSIPEILIHVVVAG-GERRRWALTAR 338

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              D   ++       A       +VT+  RAE+A              K+ F+  +S+E
Sbjct: 339 PARDYEGKF-------AGYRGFGRDVTERWRAEQA--------EAESRAKSEFLAMMSHE 383

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++G    L  +K   L+ +Q   V  I  S   L  ++NDILDL+ ++AG ++
Sbjct: 384 IRTPMNGVLGLASTLLETK---LDPEQRHAVMTIRESGDNLQRILNDILDLSKLNAGKLE 440

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
                     L+  V   I       ++ +    D KL      D  R+ Q+   + SNA
Sbjct: 441 FESVDFSPAALVEAVTAIIGVNAKTKSLLVNADIDPKLPPALKGDVARIRQVLINLASNA 500

Query: 699 MDFSSKGS-TVILKAA-RDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + F+ +G  T+ +    RD+        V + G  IP D    +F  F        RR  
Sbjct: 501 VKFTERGGLTIAVACRTRDDHKATIEWRVSDTGIGIPADRVGKLFTDFAQADASINRRFG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+I    I   GG +++SS     +T    +
Sbjct: 561 GTGLGLAISRRIIEQMGGAIAVSSVQGEGSTFRFSL 596



 Score = 37.6 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 52/165 (31%), Gaps = 16/165 (9%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVF-KVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           ++S   ++ E  +  ++ ++ +  IS+  K   ++    +W  D  G ++ A   +    
Sbjct: 217 LVSHGNVFLENLKAQIRHERQNETISLLLKEFQENAASWLWQTDAEGRLIDAPQRFADVA 276

Query: 227 --ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS----TLEHGNNKSYKIV 280
               + +  ++ +     L   +       +  + +            +  G  + + + 
Sbjct: 277 QLPLDQLKGERLVDTLEYLCPTDTATLATFADRMARRLSIPEILIHVVVAGGERRRWALT 336

Query: 281 RVLNSF------GEAGIAIDVSKE---ITVNDQLTHTYEILHNLT 316
                       G  G   DV++         +     E L  ++
Sbjct: 337 ARPARDYEGKFAGYRGFGRDVTERWRAEQAEAESRAKSEFLAMMS 381


>gi|330986722|gb|EGH84825.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 917

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|288941215|ref|YP_003443455.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896587|gb|ADC62423.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 905

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/417 (22%), Positives = 168/417 (40%), Gaps = 48/417 (11%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           T+ +   L  + + E   +   +   E +D+L  GV V GPD  I L+NP    L     
Sbjct: 342 TVRLVMELRAREEAEAALSESERNYRELLDNLHVGVVVHGPDTAILLANPMASRLLGLAV 401

Query: 472 NRLSPGTHIRNIAATCSRYYNESD-GWDLFAAIITSFDDERKSLQGTL------ELLSDS 524
           ++L    H R       R+  E      L    +T   +    +Q  +      E +  +
Sbjct: 402 DQL----HGRTAMDPAWRFVREDGTPMPLAEYPVTRVVNTGVIVQDLVLGILEPEDIRLT 457

Query: 525 VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALR---------------- 563
            ++    PL +      Q ++TF ++T    AE  L    + L                 
Sbjct: 458 WVQCEAYPLWDEPGRLQQIVVTFFDITARKSAETELERYRQHLESLVASRTQELSEARDA 517

Query: 564 --KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K++F+ ++S+E+R+P+  IIG   LL+       + +   ++  +  ++  LL
Sbjct: 518 AEAANRAKSAFLANMSHEIRTPMNAIIGLNHLLQHEV---TDPRAHDWLTKVGEAAAHLL 574

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSF 680
            +++DILDL+ ++AG + L        +L+      +  +  +  +R+   I+     S 
Sbjct: 575 RIIDDILDLSKIEAGHLTLETGEFSPRNLIERTFSLLGDRARQKGLRLHAAIAPDVPESL 634

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMC 735
           V D  RL QI    +SNA+ FS +G  + ++A     D         V + G  +  +  
Sbjct: 635 VGDALRLQQILLNFVSNAIKFSEQGE-IRVRAWTQAEDAEWMRLHLDVADQGIGLTAEQQ 693

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--CRI 788
             +F  F        RR  G GLGL+I     NL  G V + S     +T     R+
Sbjct: 694 ARLFQPFAQGDESTTRRYGGTGLGLAIARRLANLMQGEVGVVSEPGRGSTFWASVRL 750



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 74/244 (30%), Gaps = 19/244 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E  +++   +  E+L NL V + +   +  +   N     L  + +  L    + D  
Sbjct: 354 EAEAALSESERNYRELLDNLHVGVVVHGPDTAILLANPMASRLLGLAVDQLHGRTAMDPA 413

Query: 356 LEFLRSANKLPEQLNWKTWK--------ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
             F+R          +   +        +++       E  + TW       L       
Sbjct: 414 WRFVREDGTPMPLAEYPVTRVVNTGVIVQDLVLGILEPEDIRLTWVQCEAYPLWDE--PG 471

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                +  F ++T +   ET+    ++   + ++ L     V      +  +  A  +  
Sbjct: 472 RLQQIVVTFFDITARKSAETE----LERYRQHLESL-----VASRTQELSEARDAAEAAN 522

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + +   L+  +H            N     ++       +  +       L  + D +L+
Sbjct: 523 RAKSAFLANMSHEIRTPMNAIIGLNHLLQHEVTDPRAHDWLTKVGEAAAHLLRIIDDILD 582

Query: 528 YSII 531
            S I
Sbjct: 583 LSKI 586


>gi|239637304|ref|ZP_04678291.1| sensor protein YycG [Staphylococcus warneri L37603]
 gi|239597141|gb|EEQ79651.1| sensor protein YycG [Staphylococcus warneri L37603]
          Length = 608

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 153/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRV 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++N     +    +  L     +  +         E    D       SF  +    +G
Sbjct: 286 RIANDMALKMLGMAKEDLIGYYMLSVLN------LEEEFSLDEIQENNDSFLLDINEEEG 339

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++     +S I             + D    ++            +  +  FV +V
Sbjct: 340 IIARVN-----FSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+       N    Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKDDN-LAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 443 SDQITKEIVDFNMFINKIINRHEMAA--KDTTFVREIPQQTIFAEIDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 38.8 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +    L        +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALKMLGMAKEDL--------I 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L E+ +    +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLNLEEEFSLDEIQENNDSFLLDINEEEGIIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|284037676|ref|YP_003387606.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283816969|gb|ADB38807.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 930

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 118/719 (16%), Positives = 257/719 (35%), Gaps = 49/719 (6%)

Query: 105 IPQTDTDLLSFENWLKFHHYIKLS-KATEKLRKEGQ-----SFDLVAETQNDCAIKIEGR 158
           + +    + ++E+ L       L     +  R   +     ++ + A+          GR
Sbjct: 215 LDEFPDTMEAWEDRLYPGDREALPWHVLDAYRSATRDSHSVAYRIRAKDGTYKHFLDRGR 274

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           +    A  + L +    +++       + L    +  + L  +L   +   D+   I+  
Sbjct: 275 LWQWSADGKPLLIVSTITDMTNQKTMEETLRLDANRQRNLIANLQEGILFEDEQRTIVLV 334

Query: 219 NISYKKNTET-------EGIVFQKAIGESRKLFKEEIK--KRMISSSALEKNFCETVSTL 269
           N  +              G+       +S+  FKE      R+      +K        L
Sbjct: 335 NQHFCDLFAIPATPDQLRGMDCSGMAEQSKHYFKEPAVFVDRVAHLLLEQKPVTGEELEL 394

Query: 270 EHG---NNKSYKIVRVLNSFGEAGIAIDVSKEITVND----QLTHTYEILHNLTVAIAIF 322
             G         I       G      D++           Q      I+ N+ + +   
Sbjct: 395 ADGRIFERDYVPIFMDGVYAGHLWKYADITSRKRNEALAMYQKEKYQRIIENMNLGLLEV 454

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D++  + + N+SF ++       L  N + D LL          +  +  T   + + + 
Sbjct: 455 DRDDRIVYTNQSFCDMSGYAYDELVGNIAKDMLLNGQHLDVMSEKNNSRLTGAMDAYELA 514

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
            +++  +  W L +G  L+    +    G+  +  ++T Q  LE++     +   E  ++
Sbjct: 515 INNKRGEAKWWLISGAPLY--ADTGEVIGSTGVVLDITRQKQLESELRESEQRFREIAEN 572

Query: 443 LSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGT-------HIRNIAATCSRYYNES 494
           + E   +      +    NP F          L           H  + AA  + + ++ 
Sbjct: 573 VDELFWIRDLHAPKFLYMNPTFERFSGIRVEELYRNPLRFADFVHQDDRAAVLAAFLSDE 632

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
            G +    ++          +GT+  +   V+  +       + +    ++T  +  E  
Sbjct: 633 PGMNATFRVVNP--------EGTIHWVRAKVVLLTDETGVPRRRLGVASDITAVIENEHI 684

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK---TSKLGSLNSKQ-SQYV 610
           L       R+ + +K+ F+   S++ R+PL  I    +L++       G+L      +  
Sbjct: 685 LEASLARERELNGLKSQFIATASHQFRTPLMAITSSAELIRYYSALPTGTLKPPLFLKQA 744

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK-QSIATKMHENNIRI 669
           E I    + L  L+ D L L+ ++ G + L    + +  L   +   + + +     + +
Sbjct: 745 EAILKQVSWLEELMTDTLTLSKIEEGKVTLRREELDVVGLCQTLIGDTFSERSDGRQVDL 804

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V+  G   S  ADR  L  +   +LSNA  +++      L    D G  + +V++ G  
Sbjct: 805 VVV--GSPVSVRADRTLLSHVLQNLLSNAFKYAATNPQ--LTVQYDPGRVMLAVEDKGIG 860

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           IP +    +F +F   ++    +G GLGL+I   ++ L GG + ++S++   TT    +
Sbjct: 861 IPANELPLLFGKFFRASNVHSIQGSGLGLAICREYVQLLGGTLEVASTEGVGTTFRILL 919


>gi|194434503|ref|ZP_03066763.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|194417282|gb|EDX33391.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|320181485|gb|EFW56403.1| Aerobic respiration control sensor protein arcB [Shigella boydii
           ATCC 9905]
 gi|332086332|gb|EGI91484.1| aerobic respiration control sensor protein arcB [Shigella boydii
           5216-82]
 gi|332086398|gb|EGI91545.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 155-74]
          Length = 778

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|326390091|ref|ZP_08211653.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993956|gb|EGD52386.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 113/237 (47%), Gaps = 3/237 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E L + +E+KN F+ ++S+EL++PLT+I GF   +    L   NS+  +Y+  I  
Sbjct: 227 NKMAEELGQLEEMKNEFISNISHELKTPLTSIKGFA--ITAMDLVEKNSELYEYLNIIDE 284

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  LV+++LD + ++   +KL++  + L+ L+ +    +        + +      
Sbjct: 285 ETDRLSRLVDELLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNYGVNLICKKKI 344

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D  RL Q+   I+ N +   S+G  V +     +   +  +++ G  IP++  
Sbjct: 345 DRVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAVIRIEDQGQGIPQEEI 404

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K +F++F    +  +  G GLGL+I +  I  H G +++ S     +     +P K+
Sbjct: 405 KYIFDKFYRGKNN-KYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELPLKD 460


>gi|319793620|ref|YP_004155260.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS]
 gi|315596083|gb|ADU37149.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS]
          Length = 1167

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 154/321 (47%), Gaps = 5/321 (1%)

Query: 475 SPGTHIRNIAATCSRYYNESD-GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-P 532
                ++++ A   +   E     +         +++ K+L+ +  +L +   E      
Sbjct: 391 RYREQLQDVLAETQQLNEELQVQQEELRTANEELEEQSKALRASQAMLENQQAELEQTNS 450

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             + +T       T   R +R L ++ + L++A   K+ F+ ++S+ELR+PL + +    
Sbjct: 451 QLSERTEALDQRNTALRRVQRDLEDRADELQRASRYKSEFLANMSHELRTPLNSALILAK 510

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +  G+L  +Q ++ E I +S   LL L+NDILD+A V+AG +++    + L  L  
Sbjct: 511 LLGDNPQGNLTLEQVKFAESIYSSGNDLLVLINDILDIAKVEAGKLEVVPEDVSLARLAE 570

Query: 653 EVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            ++ + +    + N+  ++    G   S V DRQR+ QI   +LSNA+ F+ KG   ++ 
Sbjct: 571 SLESTFSPLAMQKNLSFRLELQPGAPASLVTDRQRVEQILKNLLSNALKFTDKGEVALVV 630

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
           +A  +G   F+V ++G  I     + +F  F         +  G GLGLSI     +L G
Sbjct: 631 SATADGGAAFAVSDSGIGIDAQQHELIFEAFRQADGTTSRRYGGTGLGLSISRDLTHLLG 690

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +++ S     +T   ++P+
Sbjct: 691 GTLTVQSEPGKGSTFVLQLPA 711


>gi|186681899|ref|YP_001865095.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464351|gb|ACC80152.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 444

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 120/250 (48%), Gaps = 4/250 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R +  +  +N  L +A  +K+ F+  +S+ELR+P+  IIGF+ +L   K G L++
Sbjct: 150 NQELERQQEQIQMQNFKLLEASRLKSHFLATMSHELRTPMNAIIGFSQILLRPKFGQLSN 209

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q+  VE I  +   LL L+N++LD + ++ G + L      ++ ++N     + +    
Sbjct: 210 QQADMVERILNNGKHLLMLLNEVLDFSKLEIGRLDLKAEIFDVSKVINLAVGEMRSLADA 269

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSV 723
             + + V +D +      D  R+ QI + +LSNA+ F+  G  + ++            V
Sbjct: 270 KKLSLLVQNDLQNPFIFNDPVRIRQILTNLLSNAIKFTESGE-IWVEVKELPTNQVAIIV 328

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I     K +F  F        R+  G GLGL+IV+S + + GG + + S     
Sbjct: 329 RDTGIGIASRDFKRIFEAFRQVDQTITRKYPGTGLGLAIVDSLVRMMGGKIFLESKLGIG 388

Query: 782 TTINCRIPSK 791
           +     +P +
Sbjct: 389 SMFKIELPRQ 398


>gi|312887983|ref|ZP_07747567.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311299464|gb|EFQ76549.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 733

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 126/260 (48%), Gaps = 12/260 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                       +    L    + L +A +IK +F+ ++S+E+R+PL +I+GFT+LL+  
Sbjct: 208 CWFILGQFRQQNKLILKLDASEKRLTEALQIKENFLANMSHEIRTPLNSILGFTNLLQRR 267

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                +++   ++E I  +   L+ ++NDILDL+ ++AG+M++  +   +  L++ ++  
Sbjct: 268 DKDPDSAE---FIESIQKAGENLMAIINDILDLSKIEAGMMRIVKAPFSVRGLIHSIETL 324

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-- 714
              +++E  +++       +  + + D  RL QI   ++ NA+ FS  G  + +  +R  
Sbjct: 325 FKERVNEKGLQLNCSVASNVPDTLIGDATRLTQILVNLIGNALKFSD-GGMIEVLVSRVW 383

Query: 715 -DNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            D  +      VK+ G  I  +    +F RF            G GLGLSIV++ I L G
Sbjct: 384 ADGSNIQLGVKVKDTGIGISNEKLDKIFERFNQAEDSITRNYGGTGLGLSIVKTLIELQG 443

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G++ + S     +     IP
Sbjct: 444 GNIEVHSIPGKGSEFAFYIP 463


>gi|229095613|ref|ZP_04226594.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
 gi|228687745|gb|EEL41642.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
          Length = 883

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 465 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
             I SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WIIISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 705 SNVGEGSTFTVYIP 718


>gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2]
 gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2]
          Length = 941

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 122/269 (45%), Gaps = 20/269 (7%)

Query: 536 AQTMLTFVNVTDSVR---AERALTEKN-----EALRKADEIKNSFVQHVSYELRSPLTNI 587
            Q      ++ + VR   AE  LT        +  + A + K+ F+ ++S+E+R+P+  +
Sbjct: 233 GQIQQRDEHLEEQVRNRTAELQLTMDKAIVLADEAQAASKAKSQFLANMSHEIRTPMNGV 292

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  ++       +L  +Q   +E I +S   LL ++NDILD + ++AG +++      L
Sbjct: 293 LGMAEMALDM---NLTLEQQNAIETIKSSGESLLTIINDILDFSKIEAGKLEIETINFNL 349

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             L+ E+ Q +A + H   + + V     L     +D  R+ Q+ + +LSNA+ F+ +G 
Sbjct: 350 PALIEEIAQILAHRAHAKGLELIVDIAETLHPDMSSDPSRIRQVLTNLLSNAIKFTEQGE 409

Query: 707 TVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            V LK        D+    F V++ G  +  +  K +F  F        R   G GLGL+
Sbjct: 410 -VYLKVESLKDMGDSEQVRFLVRDTGIGMTAEERKKLFQPFSQADESTTRKYGGTGLGLA 468

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I    + L  G ++ + +          +
Sbjct: 469 ISRQLVELMDGQINCTGNPGEGAEFWFDL 497


>gi|332752371|gb|EGJ82761.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           4343-70]
 gi|333000305|gb|EGK19888.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-218]
          Length = 778

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74]
          Length = 933

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSVESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANWLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|330889404|gb|EGH22065.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 905

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 258 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 314

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 315 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 374

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 375 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 434

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 435 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 494

Query: 787 RI 788
            +
Sbjct: 495 SL 496


>gi|221141404|ref|ZP_03565897.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257424215|ref|ZP_05600644.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426892|ref|ZP_05603294.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429528|ref|ZP_05605915.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432175|ref|ZP_05608538.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435136|ref|ZP_05611187.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M876]
 gi|282912933|ref|ZP_06320725.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M899]
 gi|282922561|ref|ZP_06330251.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C101]
 gi|293497986|ref|ZP_06665840.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511576|ref|ZP_06670270.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M809]
 gi|293550185|ref|ZP_06672857.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257273233|gb|EEV05335.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276523|gb|EEV07974.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257280009|gb|EEV10596.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283054|gb|EEV13186.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285732|gb|EEV15848.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M876]
 gi|269939545|emb|CBI47903.1| transcriptional regulatory protein WalK [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314782|gb|EFB45168.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C101]
 gi|282323033|gb|EFB53352.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M899]
 gi|290919232|gb|EFD96308.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096917|gb|EFE27175.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291465534|gb|EFF08066.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M809]
 gi|329312743|gb|AEB87156.1| Sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 608

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 155/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 286 RIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 343

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 344 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++      +M   +         K      D  ++ Q+F  +++
Sbjct: 443 SDQINKEIIDFNMFINKIIN--RHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 38.0 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +           D +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGM--------AKEDII 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++   +  +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|37676307|ref|NP_936703.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200848|dbj|BAC96673.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 1223

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 158/357 (44%), Gaps = 15/357 (4%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           + +D +   +++    GR+ LSN A+++ ++             ++ + CS  +      
Sbjct: 568 KLLDTIPSMISISDSKGRLVLSNQAYQASFRQCRENGCV-----DLESVCSFLHLSEREQ 622

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             F  II     E    +    +   ++L      +     +  F +++D  + E AL E
Sbjct: 623 AEFEEIIQVPASECGMGERFYHVTRKAILHDQ---MEMTHYLTLFSDISDLKQTELALRE 679

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            N A  +A E +N F+  VS+ELR+P+  ++G  ++L        NS+  Q ++    S+
Sbjct: 680 SNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEILSHRLS---NSESQQLLDNAIRSA 736

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK- 676
             L   VNDILD + ++A  ++L+     + + L  V +S         ++  V      
Sbjct: 737 ERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPVLRSFEASAQLKGLQFNVHWQPTA 796

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  R+ QI S +LSNA+ F+  G  + ++ A D       + + G  + E    
Sbjct: 797 YIDAQYDALRVNQIVSNLLSNAVKFTEVG-QIKVEIACDENALSIEIVDTGCGMTEAQLD 855

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            VF  FV       RR  G GLG+SIV+S ++L GG ++  S  E  T ++  IP K
Sbjct: 856 CVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMGGTIAFHSELEQGTKVSVWIPVK 912


>gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           10329]
          Length = 576

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A++ K+ F+  +S+E+R+PL +++G  D+L+ S   +L+ +Q   +  +
Sbjct: 200 QLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQS---TLSDEQFDALNQM 256

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL +++DILDL+ +++G  +LN   I LND +  V           N+      
Sbjct: 257 ECSAELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVISQQKQVAITKNLSFNFDC 316

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                  +  D  RL QI   ++ NA+ F+  GS V +  A +N + + S+ + G  I  
Sbjct: 317 QISSDKQYWIDSTRLSQILFNLIGNAIKFTDSGS-VSVSVAEENDEVVVSISDTGIGISR 375

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  F        RR  G GLGL+I +  + +  G +S+ S +   +    RIP
Sbjct: 376 AKQAHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434


>gi|302388871|ref|YP_003824692.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302199499|gb|ADL07069.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 483

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 23/264 (8%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN--- 603
           +  R    L    + + + +E+KN F+  VS+ELR+PLT I G+T  L ++  G+     
Sbjct: 221 EVGRLADTLNFMAQEIMRQEELKNEFIASVSHELRTPLTAIKGWTITLLSAIRGTSQAGR 280

Query: 604 ------------------SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
                              +  + +E I+  S  L  LV ++LD +  +AG +KLN   +
Sbjct: 281 SDIRENAGVPDRRVYLNLDELIEGLEIITKESERLSELVEELLDFSRFEAGAIKLNLDKV 340

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L D LN +K  +  +     +  ++  +  L   +AD  R+ Q+   +L NA  F+  G
Sbjct: 341 ALVDTLNYIKTQMMPRAKRQAVEFEIYPEEGLPEILADENRIKQVLINLLDNAFKFTPAG 400

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             V +KA   N      V++ G  IP +    V  +F     + ++ G GLGL+I +  +
Sbjct: 401 GRVRVKAESANDSVRIIVEDTGCGIPPEDLPHVTKKFYKA--KSKQPGSGLGLAICDEIV 458

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            LHGG + I+S+    T +   +P
Sbjct: 459 RLHGGRMEITSAPGKGTRVEVILP 482


>gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 742

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 86  ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQT 141

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 142 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 201

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  V ++     GD     F V++ G
Sbjct: 202 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQAGDSVELQFMVRDTG 261

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 262 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 321

Query: 786 CRI 788
             +
Sbjct: 322 FTL 324


>gi|170698659|ref|ZP_02889726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170136438|gb|EDT04699.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 663

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 151/371 (40%), Gaps = 23/371 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           V    +D   + +       RI   NPA R L+  +            IA    R +   
Sbjct: 145 VLRRVVDASPDAIVGVDAARRITSWNPAARRLFGIDAAAAIGHDVTMLIAPRWLRLHPVP 204

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-------- 546
             +    A     D       G+    +     ++  P+ +AQ   T +++T        
Sbjct: 205 ASFANAGAPAGPLDVLCLRRDGSRFRAT-----FTASPIVDAQGNCTGLSMTLREARERR 259

Query: 547 ----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                 +R  R   +      +++ +K+  +  VS+ELR+PL  I G+ ++L++ +    
Sbjct: 260 RCEQRDLRTLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRSGEGQGF 319

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                Q ++ I  S+  L  +V D+LD +++  G M+L  + + L  ++ E  + +    
Sbjct: 320 ---AHQAIDAIDRSARSLSRMVGDLLDASSLATGRMRLERTPVDLVRIVQEAVRELGETA 376

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N + +            AD  RL Q+ + +LSNA+ F+  G  + +           S
Sbjct: 377 EANGLELSTECAMPSCVIAADADRLRQLLANLLSNAVKFTPPGGRIKVSLNPAGARVRLS 436

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-E 779
           V + G  I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V+ +S    
Sbjct: 437 VADTGQGISAERLPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAG 496

Query: 780 GVTTINCRIPS 790
             TT+   +P+
Sbjct: 497 RGTTVTVMLPA 507


>gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 914

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 118/257 (45%), Gaps = 10/257 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M           +E  L        +A   K+ F+ ++S+E+R+P+  +IG  +LL  ++
Sbjct: 363 MRLEERTIQLEESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTR 422

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN+ Q +Y+  I+ S+  LL+L+NDILD + ++AG ++L +    L D L +  Q+ 
Sbjct: 423 ---LNASQREYLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAF 479

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDN 716
           A +  E  I +       +  +   D  RL Q+   ++ NA+ F+ +G  V+ +   R  
Sbjct: 480 AGRATEKGIELACHVALDVPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDVAVERME 539

Query: 717 GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
                  F+V + G  I  D  K +F  F         +  G GLGL+I    + L GG 
Sbjct: 540 DQQAWLRFAVSDTGPGIAADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGR 599

Query: 772 VSISSSDEGVTTINCRI 788
           + + S     +  +  I
Sbjct: 600 LELDSCVGRGSVFHFTI 616


>gi|229102180|ref|ZP_04232890.1| hypothetical protein bcere0019_13420 [Bacillus cereus Rock3-28]
 gi|228681250|gb|EEL35417.1| hypothetical protein bcere0019_13420 [Bacillus cereus Rock3-28]
          Length = 591

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 163/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         EN L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------ENFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHRVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L    +N    F V+++G
Sbjct: 463 ELTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVALVIHTENNGLTFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
             IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              T  +  +P++
Sbjct: 577 GEGTIFSVYLPNR 589


>gi|254412023|ref|ZP_05025798.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180989|gb|EDX75978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 426

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 155/361 (42%), Gaps = 2/361 (0%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           ++ ++   E  +  SE   V    G I  +NPA   +     N L        +A +  +
Sbjct: 61  DSELQHYRELFECTSEAYFVTNLMGEIHTANPAASMMLNISPNYLIGKPLTVFVAESHRK 120

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
            +         ++    +D + +   G     + +V                  +++   
Sbjct: 121 AFRNQLQQVRTSSQSMGWDVQLQPRHGEPFPAAIAVSPIRDNHGNLTGLRWLISDISQRQ 180

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +AE AL ++     +  E+K+ F+  VS+E R+PLT I+  +++L+         +++ +
Sbjct: 181 QAE-ALRQELAEQHELSELKSRFLSTVSHEFRTPLTTILSSSEMLERYSDRLSPERKAVH 239

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + IS S   +  L+ DIL  +  DA  ++ N + + L++    + + +  +      RI
Sbjct: 240 FQKISQSVDYMTQLLEDILIYSKADAEKLEFNPTVVNLSEFCQTLVEDLHLEAANKE-RI 298

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  +        D + L QI S +L+NA+ +S KG  V  +  R+    I  +++ G  
Sbjct: 299 QLKCNDDDICGNFDPKLLRQILSNLLTNALKYSPKGDPVDFELNREENQAILLIRDRGIG 358

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP +    +F  F    + G   G GLGL+IV+  ++LH G +S+ S  +  T     +P
Sbjct: 359 IPANDQVHLFEPFHRAQNTGTINGTGLGLAIVKKAVDLHQGMISVQSEIDVGTIFTVNLP 418

Query: 790 S 790
            
Sbjct: 419 L 419


>gi|149918850|ref|ZP_01907336.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149820224|gb|EDM79641.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 422

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 17/266 (6%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N     +    L      LR  D++K++F+  VS+ELR+PLT+IIGF+++L     G LN
Sbjct: 153 NHRALQQQNAELERAIAHLRDVDQLKSNFLATVSHELRTPLTSIIGFSEMLAKGIAGPLN 212

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q++Y   I      LL L+  IL+++ ++ G ++L      L D++     S      
Sbjct: 213 EEQTEYANMILDRGEELLRLITQILEMSKMEMGTVRLKLRPTPLADVVGRAFGSAVIPAD 272

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----------- 712
             ++ +       L   + D  ++LQ+   +++N + F+     V ++A           
Sbjct: 273 RAHVNLVRDFADDLPLMLVDPDKVLQVLINLVTNGIKFNRPDGHVAVRAELAPIRRPFEE 332

Query: 713 ----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
                        SV + G  IPED    +F+ F        R   G GLGLSIV+  I 
Sbjct: 333 DFFGEEVADAMRVSVSDTGIGIPEDQLARIFDAFYQVDSSSTREHGGAGLGLSIVKKLIE 392

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            HGG +   S     TT +  +P  E
Sbjct: 393 AHGGEIWAESIVGVGTTFHFTLPLAE 418


>gi|254248418|ref|ZP_04941738.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
 gi|124874919|gb|EAY64909.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
          Length = 685

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 149/366 (40%), Gaps = 13/366 (3%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D   + +       RI   NPA  S++  +  + S    +  IA    R +   
Sbjct: 161 LLRRVVDASPDAIVGTDAARRITSWNPAAASIFGIDTAQASGRDIVTMIAPRWLRRHAVP 220

Query: 495 DGWDLFAAIITSFD-------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
             +    A +   D         R         + D+    + + L   +      N   
Sbjct: 221 ASFADLRAPVGPLDVLCVRSNGGRFRATFAASPIVDAQGHCAGLSLTLREAGERRRNERH 280

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +R+ R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L+ +          
Sbjct: 281 HLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRNADGQGF---AQ 337

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q V+ I  S+  L ++V D+LD +++  G ++L    + L  ++ +  + +      N +
Sbjct: 338 QAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQANGL 397

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +            AD +RL Q+ S +LSNA+ F+  G  + +   R       SV + G
Sbjct: 398 VLSTEYAMPACVIPADGERLRQVLSNLLSNAIKFTPPGGRINVSLTRAGERVRLSVSDTG 457

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTI 784
             I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V  +S+      T+
Sbjct: 458 QGIAPEYLPHLFDTFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAGRGMTV 517

Query: 785 NCRIPS 790
              +P+
Sbjct: 518 TVTLPA 523


>gi|83644635|ref|YP_433070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83632678|gb|ABC28645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 957

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 10/245 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  +K+ F+ ++S+E+R+PL  IIGFT LL  S LG    +Q   +  I
Sbjct: 278 ELDMARKEAIEASRVKSEFLANMSHEIRTPLNGIIGFTHLLLKSNLG---PQQRDQLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VI 672
             SS ILL ++NDILD + ++AG + L+ +T+ L +++ +V   +A   HE N+ +  ++
Sbjct: 335 LKSSEILLTIINDILDFSKIEAGKLVLDNTTVNLQEIVEDVLTMLAPGAHEKNLDLAGLV 394

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                   + D  R+ QI + +++N + F+  G  V+     D  D       +V ++G 
Sbjct: 395 YSDVPSHIMGDPLRIKQIVTNLVNNGIKFTQSGEVVVRVMLEDESDESSLIKITVTDSGV 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F+ F        RR  G GLGL I        GG + + S     +T   
Sbjct: 455 GLSRVQQQTLFSAFSQADASTARRFGGTGLGLVISRRLTEQMGGQIGVESELGKGSTFWI 514

Query: 787 RIPSK 791
            +P +
Sbjct: 515 ELPVE 519


>gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863]
 gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v]
          Length = 949

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 128/692 (18%), Positives = 247/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    + VF+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPVFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEI------DLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKSDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|154251811|ref|YP_001412635.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
 gi|154155761|gb|ABS62978.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
          Length = 288

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNS 604
               R+E AL         A   K+ F+ ++S+ELR+PL  IIGF++ ++  +  G  + 
Sbjct: 26  MSRQRSEVALRSAKIEADMASRTKSEFLANMSHELRTPLNAIIGFSEFIQHIAASGKPSE 85

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K  +Y  +I+ +   LLN+++DILD+A +++G   L      + +L++     I  ++ E
Sbjct: 86  KTGEYATHIAGAGRHLLNIISDILDIAKIESGTFSLATEPYDVRELVDACIVLIEPRIRE 145

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSV 723
               +++ +D  L     D +R+ Q+   +LSNA  F+ +G  ++L A +  +G    +V
Sbjct: 146 KKQVLEIKADPSLPEVPVDARRIKQVLINLLSNAHKFTGEGGRIVLVATQTPDGGVTIAV 205

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  + ++        F  V  ++     G GLGL I  +   LHGG   I S     
Sbjct: 206 ADTGIGMTKEQISHALTPFGQVQASYARGHEGTGLGLPIAAALTTLHGGEFQIFSEPGKG 265

Query: 782 TTINCRIP 789
           TT+   +P
Sbjct: 266 TTVFFTLP 273


>gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227]
          Length = 933

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 126/681 (18%), Positives = 245/681 (35%), Gaps = 69/681 (10%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
             + +          L + + I D+N        + + L     + +   P   +   + 
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTG-PESKIKGEPRWMQERSWF 261

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
                  E +  K    +  S+  S               L+ I+ +   G  ++    +
Sbjct: 262 GYTEGFRELVLKKNLPPSSLSIVYSV-PVDKVLERIRMLILNAILLNVLAGAALFTLARM 320

Query: 420 TVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEEN 472
             +           +     +   + +     G+ +    DG   LSN     L  T  N
Sbjct: 321 YERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN----ELAHTYLN 376

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L+     R     C +  N       F  ++TS +    +LQ +           +I  
Sbjct: 377 MLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI-- 424

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                     V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  D
Sbjct: 425 -------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD 477

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N
Sbjct: 478 LLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMN 534

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L 
Sbjct: 535 HITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLH 593

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHG 769
              D       V++ G  IP      +F+ F       +   +G GLGL+I E  I++  
Sbjct: 594 VRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMD 653

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +S+ S     +    RIP 
Sbjct: 654 GDISVDSEPGMGSQFTVRIPL 674


>gi|28901084|ref|NP_800739.1| hypothetical protein VPA1229 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809597|dbj|BAC62572.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 882

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 125/251 (49%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+  Q
Sbjct: 361 EKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSPHQ 417

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I  SS  LL L+NDILDL+ +++G ++L+     + +++ +      +K     
Sbjct: 418 QEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKATSKQ 477

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDF 719
           + + +  D  + +  + D  R+ QI + ++SNA+ F+ +G  +++  + +       G  
Sbjct: 478 LELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YILVDVSYEEALEQGRGSL 536

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F +K++G  I  D   ++F  F         Q  G GLGL+I    +++ GG +  +S+
Sbjct: 537 TFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATST 596

Query: 778 DEGVTTINCRI 788
               T     I
Sbjct: 597 KGVGTCFGFSI 607


>gi|21426070|gb|AAM52311.1|AF502252_1 sensor kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V      +  +       S+ + G 
Sbjct: 387 YRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIHDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|83643211|ref|YP_431646.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631254|gb|ABC27221.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 893

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 137/266 (51%), Gaps = 28/266 (10%)

Query: 547 DSVRAERALTEKNEALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +R+E AL +  E LR A              ++ K+ F+ ++S+E+R+P+  +IG+T+
Sbjct: 359 ERIRSEEALRKSEERLRAAMKHAEHLAKAADSANKAKSEFLANMSHEIRTPMNAVIGYTE 418

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+       ++KQ  Y++ I   S  LL ++NDILDL+ V++G +++ Y+ +  + LL 
Sbjct: 419 LLEGLIH---DAKQKSYLDAIKKGSRALLTIINDILDLSKVESGKLRIEYAPLDPHRLLQ 475

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +V Q  + ++ +  + ++++ D +L    V D  RL Q+   ++ NA+ F+ +G  + L 
Sbjct: 476 DVAQIFSARISQKKLDLRIVLDDQLPHSLVLDEVRLRQVIFNLVGNAIKFTHEG-YISLC 534

Query: 712 AAR-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
           A         D+ +   +V+++G  I +D    +FN F         Q  G GLGL+I +
Sbjct: 535 AKASSIPGDDDHIELEIAVEDSGIGIAQDQQARIFNAFEQHEGQSNRQYGGTGLGLAISK 594

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
             + +  G + + S     +    R+
Sbjct: 595 KLVEMMNGEIGLKSELGKGSRFEIRL 620


>gi|329997600|ref|ZP_08302870.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS
           92-3]
 gi|328538976|gb|EGF65028.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS
           92-3]
          Length = 779

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 23/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K     ++Q           +D   + V     D      N A   L    E 
Sbjct: 134 EQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 193

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 194 QLIHLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 248

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 249 YYDRVGKRRGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++   L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 307 ILLDTE---LTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLA 363

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++
Sbjct: 364 DLENLSGLQAQQKGLRFVLEPSLPLPHKVITDGPRLRQILWNLISNAVKFTPQGGGVNVR 423

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD + F V+++G  IPE     +F  +         +   G G+GL++       
Sbjct: 424 VRYDEGDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARN 483

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG +S++S      T    
Sbjct: 484 MGGDISVTSQPGKGATFTLT 503



 Score = 44.9 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 17/152 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            +L+ +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T  
Sbjct: 131 TTLEQLKIEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGK 190

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV- 280
                Q    + + ++ EE  ++++ +   EK F   VS           G    ++I  
Sbjct: 191 S--EKQLIHLKPQDVYSEEAAEKVLETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRK 246

Query: 281 -----RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                RV    G  G   D+++     D L  
Sbjct: 247 VPYYDRVGKRRGLMGFGRDITERKRYQDALER 278


>gi|330811069|ref|YP_004355531.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379177|gb|AEA70527.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 633

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   KA+  K+ F+  +S+ELR+P+  ++G   LL+T+++     +Q
Sbjct: 243 EQHQAMAQLIKTREEAEKANSAKSEFLAMMSHELRTPMNGVLGMLQLLETTRM---TDEQ 299

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y    S S+  LL ++NDILD + ++   ++L +    L +L++   QS      +  
Sbjct: 300 HEYTALASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSSCAQSFQHSAAQRK 359

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIF 721
           + + ++    +       D  R+ QI   ++ NA+ F+ +G  V ++    A D+    F
Sbjct: 360 LGLDLLVPDDMQALQVQGDPTRIRQILVNLIGNALKFTEQG-RVTVQCQWQALDHELLWF 418

Query: 722 --SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +V+++G  IP +  + +F+ F    +    +  G GLGL I  +     GG +   S 
Sbjct: 419 TCTVRDSGIGIPAESLERMFDAFQQADNSISRRYGGTGLGLPIARTLAERMGGTLRAQSE 478

Query: 778 DEGVTTINCRIPS 790
           +   +     IP 
Sbjct: 479 EGQGSVFTLEIPL 491


>gi|320174576|gb|EFW49712.1| Aerobic respiration control sensor protein arcB [Shigella
           dysenteriae CDC 74-1112]
          Length = 778

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|189426492|ref|YP_001953669.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422751|gb|ACD97149.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 717

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 11/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    E    A   K+ F+ ++S+E+R+P+  ++G T+LL          +Q + +  
Sbjct: 199 RELAIAREKAEAASRAKSEFLANMSHEIRTPMNGVMGMTELLLDGGFSP--EQQRKQLLA 256

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  L+ ++NDILD + ++AG ++L  +  +L   L +   S+  K  +  +R+ + 
Sbjct: 257 IRDSAENLMVIINDILDFSKIEAGKLELAAAPFLLRKNLEQGLYSLGLKAEQKGLRLVIR 316

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
            D  +      D  +L QI   ++ NA+ FS +G  + + A  +          F V + 
Sbjct: 317 VDQAVPDRLDGDCYKLRQILINLVGNAIKFSDQGE-ITVSAQLEASRGGFLLVRFCVADQ 375

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +    +F  F        +   G GLGL+I      L GG + + S     ++ 
Sbjct: 376 GIGIPLESQSRIFETFEQADVTTTKKFGGTGLGLTICRRLAELMGGRIWVKSEPGKGSSF 435

Query: 785 NCR 787
              
Sbjct: 436 FFT 438


>gi|67531559|ref|XP_662083.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4]
 gi|40741632|gb|EAA60822.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4]
          Length = 1300

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 714 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 771

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 772 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 831

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G   +     D          F FSV + G  I
Sbjct: 832 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTICKSDREQCAANEYAFEFSVSDTGIGI 891

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 892 EEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 950


>gi|254423446|ref|ZP_05037164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190935|gb|EDX85899.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 672

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 165/393 (41%), Gaps = 29/393 (7%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I+ F ++  +++  E +    +  +   ++ L    ++G  +      + L+N A R
Sbjct: 245 GELIYSFNDMAERLERYEEQNIEELTAEKAKLESLVSTIADGAILLDAKTNLILANVAAR 304

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L   E      G+ +  +          +    L +       + R  L G   +    
Sbjct: 305 RLLGWEAASPPSGSILDGLQPEVRAQLAPALAQALISEAHEG-SEFRILLDGNRTI---R 360

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           VL  +++    A      + + D  R E AL          +E K+ F+ +VS+ELR+PL
Sbjct: 361 VLLNTVLDQSRANVKGMAITLQDITR-EVAL----------NEAKSQFISNVSHELRTPL 409

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  F + L          ++ +++   +  +  L  LVND+LDL+ +++   +  +S 
Sbjct: 410 FNIKSFIETLHEYGEDLSEQERREFLATANNETDRLTRLVNDVLDLSRLESNR-RYEFSA 468

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + ++  +++V ++      +  I +    +  L + + +   LLQ+F  ++ NA+ F+  
Sbjct: 469 VEVHQPIDQVLRTYQLNAKDKQIELASDIESALPAVLGNYDLLLQVFGNLVGNALKFTPA 528

Query: 705 GSTVILKAARDN-------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGL 756
           G  V+++A                 + + G  I ++   ++F RF    +R     G GL
Sbjct: 529 GGKVVIRAYHAPSAQPNLLQSVRIEIGDTGIGIDDEDQAAIFERFFRVENRVHTLEGTGL 588

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSIV++ ++ H   +++       TT    +P
Sbjct: 589 GLSIVKNIMDKHNSQINLVGEVGVGTTFWFDLP 621


>gi|323951271|gb|EGB47146.1| hsp90-like protein [Escherichia coli H252]
          Length = 778

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|237748247|ref|ZP_04578727.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379609|gb|EEO29700.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 692

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 143/316 (45%), Gaps = 16/316 (5%)

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           Y       D    II + D   ++L+    + +   +  SI+      T+  + N+ +  
Sbjct: 78  YPRYEAVNDALVKIIQTADTNVRNLEKKTAMTAVFSIVVSILLGAAIITLTIYFNLMERK 137

Query: 550 RA------ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           R       E  L +     + A+  K  F+  +S+E+R+P+  IIG T +          
Sbjct: 138 RLTALSKREADLRDALVLAQNANNAKKEFLSRMSHEIRTPMNGIIGMTTI--AGNYLDDR 195

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++    +  I+ SS  LL+L+ND+LD++ ++ G + +N     L   L  V   +  +  
Sbjct: 196 TRVEDCLAKIAFSSRHLLSLINDVLDMSKIEEGKLAINREPFKLQPFLESVISIVWLQAK 255

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNG 717
           E+ +  +  ++D    +F+ D  R+ QI   +LSNA+ F+ KG TV L+  +     +  
Sbjct: 256 EHGLAFETALADITADTFIGDSMRINQILLNLLSNALKFTLKGGTVRLQVKQFILKNNEV 315

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              FS+ + G  + E+    +F  F         +  G GLG++I ++ +NL GG + + 
Sbjct: 316 RLRFSISDTGIGMSEEFLSRLFIPFEQAPSTISKKYGGTGLGMAITKNLVNLLGGTIHVK 375

Query: 776 SSDEGVTTINCRIPSK 791
           SS    TTI   +P +
Sbjct: 376 SSPGKGTTITVELPVE 391


>gi|167754622|ref|ZP_02426749.1| hypothetical protein CLORAM_00124 [Clostridium ramosum DSM 1402]
 gi|237733742|ref|ZP_04564223.1| signal transduction protein kinase [Mollicutes bacterium D7]
 gi|167705454|gb|EDS20033.1| hypothetical protein CLORAM_00124 [Clostridium ramosum DSM 1402]
 gi|229383080|gb|EEO33171.1| signal transduction protein kinase [Coprobacillus sp. D7]
          Length = 405

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 162/374 (43%), Gaps = 31/374 (8%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           EN   +V+ E  +N   K+    I  ++  +     +G I  +N +FR  +K        
Sbjct: 60  ENEIREVEGEKDFN--HKILNSLIKTMNLPMIFVNKEGTIIFTNQSFRDAFK-------- 109

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                 I     +YY +     L   +  S+  ERK    T   + +   +    P+   
Sbjct: 110 ------IKHLRGKYYKDIFTDQLLNIVDQSYIFERKF--STAVCIDERYYQIETTPVFRD 161

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                   +         L      +++ ++++  F   +S+EL++P++ IIG  ++L+ 
Sbjct: 162 DVAFDGSII---------LFTDVTQVKEIEKMQKQFFSDISHELKTPMSAIIGSVEILQK 212

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             + + ++  ++++  +   S  + N++ DIL+L+ ++     L+ + + ++ L+ +  +
Sbjct: 213 EGIKNKDT-FNEFMGILLKESYRMQNIIGDILELSRLEQPQATLSPALVDIDSLIKDTVE 271

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                  +  + +   +  K    + D   +  I + ++SNA+ +S+ G  + +K    +
Sbjct: 272 LFEPLAKDKQLSLVYQTKIK-EELMLDYTTVKTILNNLVSNAIKYSNAG-VISIKCNYKD 329

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
            + I  V++ G  I +D    +F+RF        ++ G GLGLSIV+  + L+ G + + 
Sbjct: 330 DNLIIVVQDEGVGISKDNIPFIFDRFFQVDRSRSKKLGTGLGLSIVKKMVELNNGTIDVE 389

Query: 776 SSDEGVTTINCRIP 789
           S+    TT    +P
Sbjct: 390 STPGIGTTFTVTLP 403


>gi|146283013|ref|YP_001173166.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
 gi|145571218|gb|ABP80324.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
          Length = 906

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S    L  +Q  Y+  I
Sbjct: 257 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKS---DLTPRQQDYLGTI 313

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   + +  ++
Sbjct: 314 EKSADSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLV 373

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNG 727
                 S V D  RL Q+ + ++SNA+ F+++G T+ ++A  ++          SV++ G
Sbjct: 374 YRDTPLSLVGDPLRLKQVLTNLISNAIKFTNEG-TIAVRAMVEDDNAERAQLRISVQDTG 432

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +   +++F  F    +    Q  G GLGL I +  I   GG + + S  +  +   
Sbjct: 433 IGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFW 492

Query: 786 CRI 788
             +
Sbjct: 493 ISL 495


>gi|187730817|ref|YP_001881876.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
 gi|187427809|gb|ACD07083.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
          Length = 778

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|26249796|ref|NP_755836.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           CFT073]
 gi|110643451|ref|YP_671181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|191174415|ref|ZP_03035918.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227887931|ref|ZP_04005736.1| histidine kinase [Escherichia coli 83972]
 gi|300979941|ref|ZP_07174793.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300990940|ref|ZP_07179392.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|301047943|ref|ZP_07194988.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|26110224|gb|AAN82410.1|AE016767_170 Aerobic respiration control sensor protein arcB [Escherichia coli
           CFT073]
 gi|110345043|gb|ABG71280.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|190905305|gb|EDV64941.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227835327|gb|EEJ45793.1| histidine kinase [Escherichia coli 83972]
 gi|300300175|gb|EFJ56560.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|300307876|gb|EFJ62396.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300407016|gb|EFJ90554.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|307555303|gb|ADN48078.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ABU 83972]
 gi|315294870|gb|EFU54209.1| PAS domain S-box [Escherichia coli MS 153-1]
 gi|323189169|gb|EFZ74453.1| aerobic respiration control sensor protein arcB [Escherichia coli
           RN587/1]
 gi|324012146|gb|EGB81365.1| PAS domain S-box [Escherichia coli MS 60-1]
          Length = 778

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|220925051|ref|YP_002500353.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219949658|gb|ACL60050.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 969

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 117/601 (19%), Positives = 217/601 (36%), Gaps = 51/601 (8%)

Query: 200 DSLDFLVWHRDQAGDILWAN--ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           +S       R  A   L  N   ++++     G  F            E           
Sbjct: 402 ESAPEPAGRRPLAASQLSLNEHAAFREIARALGARFA-GDPPGMDPAAEGADDGAPRRGG 460

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
               F    +                    E   A D S              IL  L +
Sbjct: 461 AVTPFRGAAAPARQAGR-------------EPAGAEDPSA------------RILDRLPL 495

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            + +   +  L F NR  + L     A   +       L   R    LP           
Sbjct: 496 GVLVHRGDDVL-FANRRLLGLAGYGTAEDLSQAGGAGALFKGRDPASLPPTEAGYPVCLA 554

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIV-TSNPRGGTIWMFENLTV-QVDLETKYNTLVKV 435
                        T    +G    +++    P        ++L   ++DL  +   L ++
Sbjct: 555 TREGGTLPVAVTLTTVEWSGAPASLLLLRRLPDADPA---QDLAAAELDLARQQANLREI 611

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +D +++GV      GRI   N   ++L+  E   ++            S  +    
Sbjct: 612 -EAVLDSMTDGVVTLDGSGRILDFNKGAKALFGHEPREVT--------GEDFSLLFTPDS 662

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF---VNVTDSVRAE 552
              + AA+  +   E  S++   E   + +L  ++ P+    T        +VT + R E
Sbjct: 663 RPAVQAALQRARSGEPASIEAIGER-REGILALTVAPIAGEGTRRFSALLRDVTAARRTE 721

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVE 611
             L     A   A+  K+ F+  +S+E+R+PL  I+GFT+++   + G + N +   Y+ 
Sbjct: 722 AELLRAKRAAEAANSQKSDFLATISHEIRTPLNAILGFTEVMMEEQFGPIGNERYRDYLR 781

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S   +++LV D+LDLA ++AG + L+++ + LNDL+      +  +     + ++ 
Sbjct: 782 DIRTSGEHVVSLVTDLLDLAKIEAGHLDLSFTGVALNDLVGASVSLMQPQAARQRVVVRT 841

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSI 730
                L   +AD + + Q    +++NA+ F+  G  VI+  A  D G     V++ G  +
Sbjct: 842 SFASGLKPVLADMRSMRQAALNLIANAIKFTDAGGQVIVSTAMTDRGGVALRVRDTGIGM 901

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             D  ++    F   A    R  RG GLGL + ++ +  + G + ++S     T +    
Sbjct: 902 TPDEIETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGTLRVTSRKHEGTLVEVLF 961

Query: 789 P 789
           P
Sbjct: 962 P 962



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 92/361 (25%), Gaps = 48/361 (13%)

Query: 100 HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIE-GR 158
            +    P     L + +  L  H   +     E  R  G  F       +  A   + G 
Sbjct: 401 PESAPEPAGRRPLAASQLSLNEHAAFR-----EIARALGARFAGDPPGMDPAAEGADDGA 455

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
                A              A      ++ +        + D L   V       D+L+A
Sbjct: 456 PRRGGAV------TPFRGAAAPARQAGREPAGAEDPSARILDRLPLGVLVHRGD-DVLFA 508

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N                  G +  LFK      +  +   E  +   ++T E G      
Sbjct: 509 NRRLLGLAGYGTAEDLSQAGGAGALFKGRDPASLPPT---EAGYPVCLATREGGT-LPVA 564

Query: 279 IVRVLNSFG-------------EAGIAIDVSKEI----TVNDQLTHTYEILHNLTVAIAI 321
           +      +              +A  A D++            L     +L ++T  +  
Sbjct: 565 VTLTTVEWSGAPASLLLLRRLPDADPAQDLAAAELDLARQQANLREIEAVLDSMTDGVVT 624

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
            D +  +   N+    L+  +   +     +       R A +   Q        +I ++
Sbjct: 625 LDGSGRILDFNKGAKALFGHEPREVTGEDFSLLFTPDSRPAVQAALQRARSGEPASIEAI 684

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGT---IWMFENLTVQVDLETKYNTLVKVQGE 438
            +  E             L + V      GT     +  ++T     E +     +    
Sbjct: 685 GERREG-----------ILALTVAPIAGEGTRRFSALLRDVTAARRTEAELLRAKRAAEA 733

Query: 439 T 439
            
Sbjct: 734 A 734


>gi|160885841|ref|ZP_02066844.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
 gi|156108654|gb|EDO10399.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
          Length = 534

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 163/378 (43%), Gaps = 22/378 (5%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENR---LSPG 477
            + + +     K     ++++   + V  F     +  +N +  + +   E+        
Sbjct: 166 REYKEREVRASKTLSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEGKKCWQ 224

Query: 478 THIRNIAATCSRYYNESDGWDL--FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              ++    C  +  +    D       + S+D +R   +    + S +   ++ I    
Sbjct: 225 ALYKDKTGEC-EFCPKKHLIDENGLPTKVYSWDYQRPFDKCWFRVFSAA---FAWIDGQM 280

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  + T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  LL 
Sbjct: 281 AHVI-TSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLV 339

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S       ++  YV+ +  ++ +LL L++DILDL+ ++AG +      + +     ++ 
Sbjct: 340 ES---DDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDII 396

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AA 713
           ++   K  +  + + +           D++RL+Q+ +  ++NA+ F++KG  ++L+    
Sbjct: 397 RNYDIK-EDKPVPVLLAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKG-QILLEYHLK 454

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            D  +  FSV + G  I  D    VF+RFV        +G GLGLSI  S I   GG + 
Sbjct: 455 EDTCEIEFSVADTGMGIEPDKVDRVFDRFVKLNSFS--KGTGLGLSICRSIIEHLGGTIG 512

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S     +      P +
Sbjct: 513 VESEMGTGSRFWFTHPYQ 530


>gi|86146354|ref|ZP_01064678.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
 gi|85835833|gb|EAQ53967.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
          Length = 937

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++NDILD + ++AG + L          L EV    AT  HE  + + + 
Sbjct: 332 IERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+    V L++  ++  +  F V++ G
Sbjct: 392 IDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|330953354|gb|EGH53614.1| response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 1172

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 160/366 (43%), Gaps = 14/366 (3%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
             TL +   E ++ +++ +           S  A R   + +E           +     
Sbjct: 365 LRTLTERDIEFLELVADNIGT---------SIEAARYRQRLQEVLAETQQLNEELQVQQE 415

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + I+       ++ Q  LE  ++ + + S       Q      N  + 
Sbjct: 416 ELRTANEELEEQSRILKESQVHLETQQAELEQTNEQLADQSQALAE--QRDALDRNNEEL 473

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+  L  + + L++A + K+ F+ ++S+ELR+PL + +    LL  +   +L ++Q +
Sbjct: 474 NIAQAELQARADELQRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPGENLTAEQVK 533

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD++ V+AG +++      +  L+  ++        E  + 
Sbjct: 534 FAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLA 593

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             V    G       DRQRL QI   +LSNA+ F+  GS  ++ +        F V+++G
Sbjct: 594 FTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRHPGAGIAFIVRDSG 653

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  + +F  F        RR  G GLGLSI      L GG +S++S+    +  +
Sbjct: 654 IGIAEEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFS 713

Query: 786 CRIPSK 791
             +P +
Sbjct: 714 LVLPEQ 719


>gi|257094337|ref|YP_003167978.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046861|gb|ACV36049.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1074

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/622 (18%), Positives = 216/622 (34%), Gaps = 61/622 (9%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE-EIKKRMISSSALEKNFCETV 266
           H      I   N + K    +        +  +R L+   +   R+     +   F   +
Sbjct: 80  HESADTRITVVNQADKILLASPQRGDGPTLSRNRALYSSGQAVGRLTIERTMTSEFLTGL 139

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
             L      ++ I   L       +A   +     +    + + +L N    + + D   
Sbjct: 140 PVLLGSLGLAWLIWSPLRRLPLRALAEAEAALEARD---QYQHALLDNFPFMVWLKDTES 196

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
                N  FVE++          PS + LL         PE    + ++ +  +V  S  
Sbjct: 197 RFLAVNARFVEVF--------AQPSAESLLGKSDVDIASPELA--ERYRADDRAVLASGC 246

Query: 387 THKDTWHLPNG-QTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNTLVKVQGET 439
             +    + +G Q   +    +P        GT+    ++T             +     
Sbjct: 247 PRRVEEPVESGGQQRWLETYKSPVALAGRVIGTVGYARDITESKLAADALRESEERFRRL 306

Query: 440 IDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           ++ + + +A+  +  DG  +  NPA   L+            +  I     R        
Sbjct: 307 LNDV-DSIALQGYREDGTTRFWNPAAERLYGYSAAEAIGRNLLDLIVPAEMRDDVRQAIR 365

Query: 498 DLFAAIITSFDDE---RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           ++    + +   E   ++     + + S  VL    IP   ++     V++ +  RA   
Sbjct: 366 EMCRTGVATAPAELSLQRKDGSRVAVFSSHVL--VQIPGRPSEIFCIDVDLAERNRAADE 423

Query: 555 LTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           L +  + L +                  A   K++F+ ++S+E+R+P+  IIG   LL+ 
Sbjct: 424 LAQHRDHLEELVQSRTAELAEAKEAAEAASRSKSAFLANMSHEIRTPMNAIIGLNHLLQQ 483

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                 N KQ   +  I+ ++  LL +VNDILDL+ ++ G + L  +   L  +++    
Sbjct: 484 EI---TNPKQRAQLNKINDAAQHLLGIVNDILDLSKIEVGRLTLEETDFSLLRVIDHTLS 540

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  +     +++    D  +      D  RL QI    +SNA+ FS  G  + L+A   
Sbjct: 541 MLGERSRAKGLQLLRDIDPAIPVPLRGDPLRLGQILLNFVSNAVKFSDHG-QITLRARLI 599

Query: 716 N-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                       V++ G  +       +F  F        R   G GLGL+I      + 
Sbjct: 600 EMQGKVATLRLEVEDRGIGLTGAQQARLFAAFSQADESTTRKYGGTGLGLTICRRLAAMM 659

Query: 769 GGHVSISSSDEGVTTI--NCRI 788
           GG V + S     +T     R+
Sbjct: 660 GGEVGVVSEPGVGSTFWTTVRL 681



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 103/336 (30%), Gaps = 33/336 (9%)

Query: 132 EKLRKEGQSF-DLVAE-TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189
             L   GQ+   L  E T     +     + GS     ++        L         L 
Sbjct: 113 RALYSSGQAVGRLTIERTMTSEFLTGLPVLLGSLGLAWLIWSPLRRLPLRALAEAEAALE 172

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE---TEGIVFQKAIGESRKLFKE 246
                   L D+  F+VW +D     L  N  + +       E ++ +  +  +     E
Sbjct: 173 ARDQYQHALLDNFPFMVWLKDTESRFLAVNARFVEVFAQPSAESLLGKSDVDIASPELAE 232

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITV 301
             +    +  A              G  +  +     +       G  G A D+++    
Sbjct: 233 RYRADDRAVLASGCPRRVEEPVESGGQQRWLETYKSPVALAGRVIGTVGYARDITESKLA 292

Query: 302 NDQLTHTYEILHNL-----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            D L  + E    L     ++A+  + ++   +F N +   L+    A          LL
Sbjct: 293 ADALRESEERFRRLLNDVDSIALQGYREDGTTRFWNPAAERLYGYSAAEAIGR----NLL 348

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-----HVIVTSNPRGG 411
           + +  A     + + +     +     ++   + +    +G  +     HV+V    R  
Sbjct: 349 DLIVPAEM---RDDVRQAIREMCRTGVATAPAELSLQRKDGSRVAVFSSHVLVQIPGRPS 405

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            I+  +     VDL  +     ++     DHL E V
Sbjct: 406 EIFCID-----VDLAERNRAADELAQHR-DHLEELV 435


>gi|229101717|ref|ZP_04232434.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
 gi|228681665|gb|EEL35825.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
          Length = 883

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 465 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAASMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFNPIETTNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 705 SNVGEGSTFTVYIP 718


>gi|255589130|ref|XP_002534846.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
 gi|223524480|gb|EEF27535.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
          Length = 534

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 117/256 (45%), Gaps = 15/256 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQS 607
              E  L +  +    A   K+ F+ ++S+E+R+PL  +IG     L+ + L     +Q 
Sbjct: 49  QENEERLYQAKQRAEDATRQKSEFLANMSHEMRTPLAGVIGMLGFALRDTGLKESTREQ- 107

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +    A++  LL ++ND+LD + ++AG + +      L++ ++ V      +   +++
Sbjct: 108 --ILRGQANAQSLLAIINDLLDFSKIEAGKLTIENIDFALDEAISHVATLFEEQAGAHSV 165

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD------- 718
              V  D  L    V D  RL QI   ++ NA  F+  GS TV ++   ++         
Sbjct: 166 GFAVQLDPDLPRFVVGDPTRLRQILVNLVGNAFKFTESGSVTVHVERRAEDQHDRAGRNM 225

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
             FSV++ G  I  D    +F +F        RR  G GLGL+I    + L GG + ++S
Sbjct: 226 IRFSVQDTGIGIAPDALPRLFQKFEQADATTTRRYGGTGLGLAICRQLVELMGGTIGVAS 285

Query: 777 SDEGVTTINCRIPSKE 792
           +    +T +  +P  +
Sbjct: 286 TPGVGSTFSFVLPLAD 301


>gi|71734710|ref|YP_275861.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555263|gb|AAZ34474.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 917

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|303326050|ref|ZP_07356493.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
            sp. 3_1_syn3]
 gi|302863966|gb|EFL86897.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
            sp. 3_1_syn3]
          Length = 1411

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/577 (17%), Positives = 201/577 (34%), Gaps = 35/577 (6%)

Query: 241  RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
             + F     +       L+      V        +  +IV  L    ++G  I V   + 
Sbjct: 689  LETFLAPPLQAAFERGDLKHELECFVKLPTEEQGRYVRIVVKLVVSPDSGDLIGVLSVLD 748

Query: 301  VNDQLTHTYEILHNLTVA----IAIFD--QNR-YLQFHNRSFVELWEIDLAFLATNPSND 353
            V +Q   + +IL+ L+ A    +A  D  ++R  +   N     L   +  + A      
Sbjct: 749  VTEQ-KISEQILNRLSHASYDFLADVDLRRDRYKVLSFNHQASALPPSEGGYTAQAAYLF 807

Query: 354  ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--GG 411
            + L   +        L+    +  +      S  +  T       T +++V S  +  G 
Sbjct: 808  QSLVVPKDKEICARMLDLDYMRRRLEEEGSYSFHYSLTDENGEILTKNMVVFSIDKKLGR 867

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTE 470
                  ++T  V    +   L+ +   T D    G       G +  +     R+L    
Sbjct: 868  VCLSRTDITESV---REQKALLNMLAYTFD--LAGFLNLATGGFVIHTRETVLRNLAPYT 922

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                          A      +E  G     A++    ++ +  + +    S++ L +  
Sbjct: 923  TEDFDLALEKFIRHADTEEGQDEIRGQLSVEAMLARLAEQPEGYEFSFPCRSETGLRHKQ 982

Query: 531  IPLPNAQTMLTFVNV---------TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            I +         + +             +    L       R+A + K  F+  +S+++R
Sbjct: 983  ISVLWGGENHQTICLVRADVTDVLRADQQTREQLKNALTLAREASQAKTDFLSSMSHDIR 1042

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +P+  I+G T+L    +   +  +  + +  I  +S  LL L+NDILD++ +++G + L 
Sbjct: 1043 TPMNAIVGMTELALARRDNPV--QIDESLSVIRTASEHLLRLINDILDMSRIESGHIVLV 1100

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                   + + ++         +           +    + D  R+ QI   ++SNA+ F
Sbjct: 1101 KELFSQREEVEKIVTRALALAGKKGQTFSHSFQVRHDKCIGDVLRIHQILENLISNAVKF 1160

Query: 702  SSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRG 753
            + +G  V L            G + F V + G  I  +    +F  F        G   G
Sbjct: 1161 TPEGGRVSLAVTELPQKNEQIGWYRFVVADTGIGISPEDIPHIFEVFFRVENLRVGHTEG 1220

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             GLGLSI+++ ++  GG + + S     T     +P 
Sbjct: 1221 TGLGLSIIKNIVDYKGGTIKVESEPGQGTRFTVDLPL 1257



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 20/150 (13%)

Query: 313 HNLTVAIAIFDQNR-YL--QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
            N+   + ++  +   L   FHN +F  L       +A      + L      N  PE  
Sbjct: 2   DNMPGGLCVYRFDGEKLSPVFHNPAFYNLLGYSDEHIARTQRETDYL------NVHPE-- 53

Query: 370 NWKTWKENIFSVYKSSETHKDTWHL-PNGQ------TLHVIVTSNPRGGTIW--MFENLT 420
           + +  K +I +        + T+ +  +G+       L +       G  +   ++ ++T
Sbjct: 54  DVEALKASIEAAIADEGVARHTYRVFNDGKKEYIWVQLELAARRQADGTFLLYGVYTDIT 113

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            +  LE++     +   + I+ +  GVA++
Sbjct: 114 ERHQLESRLAEAHEKTQDIINAIPGGVAIY 143



 Score = 38.4 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 40/342 (11%), Positives = 110/342 (32%), Gaps = 51/342 (14%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE 180
                ++  A  +  + G+  ++   T     +  +GR+         L L+G   +   
Sbjct: 306 EEDRERVRAAVLRAVRSGEPVEISYRT-----LHKDGRLVW-------LHLNGRRMDALT 353

Query: 181 TTLKC----KKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQK 235
                      +S    +++ L +     ++    +   +L+ N         E +V  +
Sbjct: 354 GPTTFYAVFTGMSAETKLYQSLANEAADGIYVIGREDYSLLYVNERVNLFMGGEALVSGR 413

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF----GEAGI 291
              +   +     K     +     +  +    +  G+++ Y        +         
Sbjct: 414 ---KCYAVLHGRRKPCEFCNLDRRNDGRKRQDMVIPGSDRIYATATRETDWNGIPAYVRY 470

Query: 292 AIDVSKEITVNDQ---LTHTYEIL-HNLTVAIAIFD--QNRYLQ--FHNRSFVELWEIDL 343
             D+++++   ++   L   Y+ L  +L   I +     +  +   F +  F  +  + L
Sbjct: 471 VTDITEKVRTREEKERLERYYQTLIRHLPGGITVLRCAADGAIVPEFISDGFAAMTGMTL 530

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                      L      A   PE +++   +     V    ++ +  + L  G+  ++ 
Sbjct: 531 E------QAYALYGSDAGAGVHPEDVDYILTRIR-RQVETGLDSCETVYRLRKGEQGYIW 583

Query: 404 VT------SNPRG--GTIWMFENLTV----QVDLETKYNTLV 433
           V        +  G      +F ++T     + +L ++YN ++
Sbjct: 584 VKNISALIPDEDGNARIYAVFSDVTEDMNERAELRSRYNDML 625


>gi|218710564|ref|YP_002418185.1| hybrid sensory histidine kinase BarA [Vibrio splendidus LGP32]
 gi|218323583|emb|CAV19820.1| Sensor protein barA [Vibrio splendidus LGP32]
          Length = 937

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++NDILD + ++AG + L          L EV    AT  HE  + + + 
Sbjct: 332 IERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+    V L++  ++  +  F V++ G
Sbjct: 392 IDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|323936096|gb|EGB32390.1| hsp90-like protein [Escherichia coli E1520]
          Length = 778

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|237706038|ref|ZP_04536519.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
 gi|226899078|gb|EEH85337.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
          Length = 778

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|91212635|ref|YP_542621.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|117625502|ref|YP_858825.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215488526|ref|YP_002330957.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218560280|ref|YP_002393193.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           S88]
 gi|306816448|ref|ZP_07450580.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|312968451|ref|ZP_07782660.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|331649010|ref|ZP_08350098.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
 gi|91074209|gb|ABE09090.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|115514626|gb|ABJ02701.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215266598|emb|CAS11037.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O127:H6 str. E2348/69]
 gi|218367049|emb|CAR04820.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli S88]
 gi|281180252|dbj|BAI56582.1| aerobic respiration sensor-response protein [Escherichia coli SE15]
 gi|294492786|gb|ADE91542.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IHE3034]
 gi|305850013|gb|EFM50472.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|307625191|gb|ADN69495.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UM146]
 gi|312286669|gb|EFR14580.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|315288991|gb|EFU48389.1| PAS domain S-box [Escherichia coli MS 110-3]
 gi|323957642|gb|EGB53356.1| hsp90-like protein [Escherichia coli H263]
 gi|324008722|gb|EGB77941.1| PAS domain S-box [Escherichia coli MS 57-2]
 gi|330909262|gb|EGH37776.1| aerobic respiration control sensor protein arcB [Escherichia coli
           AA86]
 gi|331042757|gb|EGI14899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
          Length = 778

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|330973917|gb|EGH73983.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 504

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 145/347 (41%), Gaps = 7/347 (2%)

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           G+     +G I   N     +    E   +     +  +   C ++ + +          
Sbjct: 7   GIFALDRNGFITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEATVNGRY 66

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T  +  R+   G+    S  +                  +++D   AE AL    E   +
Sbjct: 67  TE-EGWRQRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAER 125

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A   K+ F+  +S+ELR+PL +I+GF  LL      S    Q   + +I  +   LL L+
Sbjct: 126 ASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS----QRPQIGHILRAGQHLLKLI 181

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
           N++LD+A ++AG + L    + L+++L E    ++    + NI +K + +       VAD
Sbjct: 182 NEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPNLPDEIGVVAD 241

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           RQRL+Q+   +LSNA+ ++     V ++  +       SV + G  I  +    +F  F 
Sbjct: 242 RQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIAEQVTISVVDTGYGIAPERIGQLFKPFE 301

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                    G GLGL++ +S + +  G +S+ ++ +        +P 
Sbjct: 302 RLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPL 348


>gi|331664824|ref|ZP_08365729.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
 gi|331058072|gb|EGI30054.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
          Length = 778

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTTEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22]
 gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22]
          Length = 1793

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 135/315 (42%), Gaps = 26/315 (8%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                +    DE ++ Q  L+  +  + E +   L   Q     V  T+   A + L E+ 
Sbjct: 1262 LTEQLRERSDELENRQEALQASNAELEEKA--ELLARQNRDIEVKNTEIEEARQVLEERA 1319

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ E I  + + 
Sbjct: 1320 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAESNLTPKQVEFAETIHGAGSD 1379

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  
Sbjct: 1380 LLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPA 1439

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---------------------AARDNG 717
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         D  
Sbjct: 1440 TLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPVAIKEQLLEAGSLRDADAD 1499

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               FSV + G  I     + +F  F         +  G GLGLSI      L GG +   
Sbjct: 1500 MIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAQ 1559

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1560 SEPGRGSTFTLYLPL 1574


>gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 584

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 131/278 (47%), Gaps = 8/278 (2%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +L++   +   +  I L N +      +  DS+R    L    EA   A   K+ F+ ++
Sbjct: 166 SLQIAGGATFLFVYIVLSNGRRFERITS--DSIRLRIELNAAKEAAEAASRAKSQFLANM 223

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  ++G  +LL  +    L  +Q   ++ +  S   LL+++NDILD + ++AG
Sbjct: 224 SHEIRTPMNGVLGIAELLLAT---PLAEQQRSRLQTLYRSGQSLLDVINDILDFSKIEAG 280

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            ++L  S   L  +L +V  + A       + +       + +   AD+ RL Q+ + ++
Sbjct: 281 KLELRESDFDLRAMLRDVLDAFAATAAAKGLALSSRLGADVPAGLHADQARLRQVLTNLI 340

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRG 753
            NA+ F+  G  V+     D+    F+V++ G  +  +    VF+ F      H  +  G
Sbjct: 341 GNAIKFTEAGRVVVTVERLDDQHLRFAVQDTGVGLAAEERARVFDAFAQADVSHTRRHGG 400

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+I    + L  G + + S+    +T   ++P +
Sbjct: 401 TGLGLAISRQIVTLMAGEIGVDSTPGAGSTFWFKLPFQ 438


>gi|237746472|ref|ZP_04576952.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377823|gb|EEO27914.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 765

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 11/250 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            + AL E  E+ + A+  K+ F+ ++S+++R+P+  IIG T L   +      S+    +
Sbjct: 231 MQNALREALESAQNANAAKSQFLFNMSHDIRTPMNAIIGMTTL--ATLHLHEPSRIRDCL 288

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             ISASS  LL L+ND+LD++ +++G + LN     L +L+  +   +  +     + + 
Sbjct: 289 GKISASSRHLLGLINDVLDMSKIESGKIALNNEEFDLPELVAGLFTILQQQASSRRLDLD 348

Query: 671 VISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSV 723
           +   G      + D  R+ QI   ++ NA+ F+  G  + L            G + F V
Sbjct: 349 ISVSGIDHEKVIGDTLRVNQILLNLMGNALKFTPAGGRIRLAITELPPQYPGYGTYRFVV 408

Query: 724 KNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  +  D  K ++N F     A   +  G GLG++I ++ +++  G + + S     
Sbjct: 409 SDTGIGMDSDFLKKIYNPFERAKTATGSKIEGTGLGMAITKNIVDMMNGQIDVQSEPGKG 468

Query: 782 TTINCRIPSK 791
           TT    +P K
Sbjct: 469 TTFTVTLPLK 478


>gi|332994626|gb|AEF04681.1| putative signal transduction histidine kinase two-component system
           protein [Alteromonas sp. SN2]
          Length = 936

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 151/321 (47%), Gaps = 11/321 (3%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            +I N   +  R      G  L    + S +DE  SL+G L + +   LE++ +      
Sbjct: 481 RYIANFTPSEVRREPNLVGSTLHIQELASLNDEFSSLEGHL-VDAFKALEFARVKEQTLN 539

Query: 538 TMLTFVNVTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             L   N +   + E   R L +  E  + A   K  F+ ++S+E+R+P+  IIG  +L+
Sbjct: 540 VELAEFNHSLENKIEEKTRHLAKALEEAKAASVAKTQFLANMSHEIRTPMNGIIGSCELM 599

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                  L        E IS S++ LL +++ ILD + +++G M L+  ++ +   ++  
Sbjct: 600 MEL---PLPDGARHRTETISTSASYLLMILDSILDWSKIESGKMLLDKRSVSVAQTIDAC 656

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                    +  I I V  D  +  + + D  +L QI + ++SNA+ F+ +G T++++A 
Sbjct: 657 SVLYERSASKKGISINVNIDESVPKAVITDGGKLSQIINNLVSNAIKFTHQG-TILVEAK 715

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
              G+   SV ++G  I     +S+F++F        R   G GLGL+I +  + L GG 
Sbjct: 716 YRQGELSCSVIDSGIGISAKKIESIFDQFEQADATITRDYGGTGLGLAITKGLVELLGGS 775

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +S+ S++   TT     P ++
Sbjct: 776 ISVDSNEGTGTTFCFSFPCEK 796


>gi|237748723|ref|ZP_04579203.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380085|gb|EEO30176.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 580

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 163/370 (44%), Gaps = 28/370 (7%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR----SLWKTEENRLSPGTHIRNIAATC 487
           L+      I+ L+ G    G +  + L +P ++     L    +   S   H+R    T 
Sbjct: 68  LIDRLDCIINELTGG---TGKNNLVFLDDPVYQSHLQELQNHWKTIKSEIYHVRKGGDTQ 124

Query: 488 SRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             Y      +D+    +T+ ++   K +  T   L    + ++I            + V 
Sbjct: 125 KLYDLSEKLFDVANQAVTASEEYSEKIVYRTWGWLIGLNIAFAI----------LVLLVY 174

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                ++ L++  +    A + K+ F+  +S+E+R+P+  IIG T + + S       K 
Sbjct: 175 LLSSRQKKLSQDLQYAENASKEKSEFLSKMSHEIRTPMNGIIGMTKIARMSLEN--REKL 232

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  +  SS  LL L+NDILD+A +++G ++L      L  +L+ ++   A +  + N
Sbjct: 233 EDSLNKLDMSSQFLLALINDILDMARIESGKVELVEKEFNLLQMLDNIEIMFAQRAADKN 292

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------F 719
           I  ++I  G  G + + D  R+ QI   I+SNA+ F+  G  +IL+  +   D       
Sbjct: 293 IDFRLIKRGLTGQALIGDELRITQIIINIVSNAIKFTPSGGEIILEVRQTPTDTSRYVNL 352

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            F V + G  + E+  K +F  F        Q  G GLGL+I ++ + +  G +S++S  
Sbjct: 353 EFIVSDTGIGMSEEFMKHMFEPFEQEKQTVRQYGGTGLGLAICQNLVKMMHGTMSVNSLP 412

Query: 779 EGVTTINCRI 788
              +T   R+
Sbjct: 413 GEGSTFTVRL 422


>gi|298376648|ref|ZP_06986603.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266526|gb|EFI08184.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 423

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 12/373 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DG-RIKLSNPAFRSLWKTEENRLSPGT 478
                +   N L  +    + ++   + V    +G R    N A       +   +   T
Sbjct: 38  EMRQSQHTINFLNILMDTILSNVFVEITVKDIFNGFRYIYFNKAAEEFTGVKAEDILGKT 97

Query: 479 HIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                  +   +     D   +    +     E +   G + +++   L  +  P P A 
Sbjct: 98  DFELFPDSRRAHEIRTEDYHTIKTGRMVKEMVEYEKPNGEVRIVNIVRLLIT-NPDPGAS 156

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L  +    + + +  L      +++AD++KN+F+ ++S+E+R+PL  I+GF  L+  +
Sbjct: 157 PLLLVMLNDITEQRQDQLALMK--VQEADKMKNAFIANMSHEIRTPLNAIVGFAHLVTET 214

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              S   +Q +Y   I+ +  +LL  +NDILDL+ +++G +  N S + L D+  E    
Sbjct: 215 TNAS---EQREYFSIINKNCDLLLKQINDILDLSKIESGRLNYNVSEVELRDICQEAYVV 271

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + KM  +   +             D  R+ Q+   +LSNA+ F+SKG  + L    ++ 
Sbjct: 272 QSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG-FISLFYEVEDM 330

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               SV + G  I E+  +SVF RFV        +G GLGL I +  +   GG + + S 
Sbjct: 331 FVRVSVMDTGIGISEEKLESVFERFVKLDDF--YQGAGLGLPICKMIVEQLGGEIGVRSE 388

Query: 778 DEGVTTINCRIPS 790
               +T    +P 
Sbjct: 389 LGKGSTFWFTLPL 401


>gi|223983037|ref|ZP_03633241.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM
           12042]
 gi|223964987|gb|EEF69295.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM
           12042]
          Length = 748

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 117/587 (19%), Positives = 220/587 (37%), Gaps = 54/587 (9%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL----NSFGEAGIAIDVS 296
            + F + +++        +    E     + G+ K   +   L    +      + ID++
Sbjct: 7   PEDFPDVVRRLREQLRQAKTIHIENRLRCKDGSVKWASVKAQLFMENDESFFDCVFIDIT 66

Query: 297 KEITVNDQLTHTYEIL----------HNLTVA-IAIFDQ--NRYLQFHNRSFVELWE--- 340
           +E  +  +    YE            +      + +       YL   N +  ++ +   
Sbjct: 67  EEKQLRRREKELYERELRYFVEAASGNQSGQGRLNVTQNLLESYLTTANFAVAQVGDSYD 126

Query: 341 -IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
            +   F  ++   D  L   +   +   + ++   K      +  S      W      T
Sbjct: 127 QVIAQFAHSSMDQDTGLRIEKQMQREQVRADYAVGKSEYHFEFLRSTREGAFWS---HTT 183

Query: 400 LHVIVTSNPRGGTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            H  +  NP  G + +F    ++T Q   E   + +V +  + I  +           RI
Sbjct: 184 FHSCL--NPETGELILFFYTLDITEQKLQEQLLDQIVSLNYDIIAEID----AHSGQLRI 237

Query: 457 KLSN----PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
             SN    PA        E   S       IA    +   +     L      +F  E +
Sbjct: 238 HASNDPMVPAEDQFSLAIEQFASRYVKSEFIAEYRRQLDLDRMKRTLAEQGPYTFSVEMQ 297

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEI 568
             QG   +    V +   +     +  +T  +VT+ VR E+     L     A ++AD  
Sbjct: 298 DDQGQTRV---KVYKVFYLDRQLERLCVTRSDVTEVVRQEQTQKAELAAALNAAQQADAA 354

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+  +S+E+R+P+  I+G + +   S       +  + +E I  SS  LL L+NDIL
Sbjct: 355 KTDFLSRMSHEIRTPMNAILGMSAIAAQSLNDP--DRVGECIEKIQLSSRFLLGLINDIL 412

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRL 687
           D++ +++G + LN   +V   L+  V    A +     +R + + D  L   +  D  +L
Sbjct: 413 DMSRIESGKLLLNNGPLVTRRLIEGVSTLCAGQAAAKGVRYRCVVDPSLQTEYTGDSMKL 472

Query: 688 LQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            Q+   ILSNA+ F+  G  V+     ++A ++N    F +++ G  I  +    +F  F
Sbjct: 473 QQVLVNILSNAVKFTDSGGEVVLHASQVQAKKENAVVRFVIRDTGVGISPEFLPHLFEPF 532

Query: 743 VSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              +        G GLGL+I +S ++L  G +S+ S     T     
Sbjct: 533 SQESTGTTAAYGGSGLGLAISKSVVDLMDGRISVRSEKGKGTEFIIE 579


>gi|308125838|ref|ZP_07663534.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308111657|gb|EFO49197.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 778

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 129/257 (50%), Gaps = 17/257 (6%)

Query: 546 TDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +  +A++ LT+  E          +A + K+SF+ ++S+E+R+PL  +IG +++L  + 
Sbjct: 365 HEREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADT- 423

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L + Q  YV+ I  SS +LL+L+ND+LD + +++G++ ++  +  + + + ++   +
Sbjct: 424 --PLTATQRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIV 481

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAA 713
           + K  E  I + V IS       V D  RL Q+    +SNA+ F+ +GS       L++ 
Sbjct: 482 SPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESN 541

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                  FSV+++G  I E   K +F  F        R   G GLGL+I    + L GG 
Sbjct: 542 ESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGS 601

Query: 772 VSISSSDEGVTTINCRI 788
           + + S     +    ++
Sbjct: 602 IQLESEKGRGSRFYFQL 618


>gi|229522276|ref|ZP_04411692.1| sensor protein TorS [Vibrio cholerae TM 11079-80]
 gi|229340261|gb|EEO05267.1| sensor protein TorS [Vibrio cholerae TM 11079-80]
          Length = 984

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L + Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTATQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRV 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFGFTLPL 691


>gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii CDC 3083-94]
 gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii
           CDC 3083-94]
          Length = 949

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGIGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVRERIR--------MLILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|126731549|ref|ZP_01747355.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
 gi|126708085|gb|EBA07145.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
          Length = 886

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/387 (25%), Positives = 167/387 (43%), Gaps = 24/387 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLSNPAFRSLWKT-------- 469
           L  Q + E + N   + + ETI   S + V     + RI   N A   ++          
Sbjct: 210 LARQREGEAQANFETRRRMETIISTSLDAVVAVSRENRIIEWNGAAERVFGYTRAEAIGT 269

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +   L    H R +  +    Y       +    I   +  RK   GT+  +    L  +
Sbjct: 270 DMPTLIVPPHFREMHRSGMSRYLNDGEPRVIGRGIVQLEAMRK--DGTVFPVD---LSLA 324

Query: 530 IIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
               P  +  + F  +++D VR++ AL    +     ++ K   +  +S+E+R+PL  I+
Sbjct: 325 KANSPTGEIFVAFLRDISDRVRSDEALRRARDRAVAGEKQKAELLAVMSHEMRTPLNGIL 384

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +LL+     SL ++  +Y+  I  SS ILL  VN++LD++ +DAG M L  +   L 
Sbjct: 385 GTLELLE---ADSLPAEDQRYLRIIRQSSEILLGHVNEVLDISRLDAGKMTLRKTRFDLV 441

Query: 649 DLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            LL E+ +S A +       + +      L    +D  RL QI   ++SNA+ F+  G  
Sbjct: 442 ALLEEIVESQADRARAQGNLLTLRPPNPALHEVYSDPDRLRQILLNLVSNAIKFT-AGGR 500

Query: 708 VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
           ++++A  D+G  D    V + G  I  D    +F+ FV+      RR  G GLGLSI + 
Sbjct: 501 IMIEADCDSGMDDCELRVIDTGVGIKPDDLARIFDDFVTIDSSYGRRNTGTGLGLSISQR 560

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
                GG +   S     +    R+P 
Sbjct: 561 LATALGGELGAESEPGDGSVFWLRLPL 587


>gi|3320466|gb|AAC82662.1| RcsC [Proteus mirabilis]
          Length = 507

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 132/255 (51%), Gaps = 7/255 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   V+++  V+ ER+L     A  +A++ K+ F+  VS+ELR+PL  IIG  +LL++  
Sbjct: 11  ICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSL- 69

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             + N + ++ ++ +  SS++LL +++DILD + +++  +K++        +++ V  + 
Sbjct: 70  --TQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNY 127

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              + + ++ I    +  +   V  D  R+ Q+ S +L+N++ F++ G  + L   RD  
Sbjct: 128 LPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-CITLHLYRDEY 186

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSIS 775
              F + + G  I E M   +F  F   +   +    G GLGL+I E  INL  G +S+ 
Sbjct: 187 YLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVV 246

Query: 776 SSDEGVTTINCRIPS 790
           S +   +    RIP 
Sbjct: 247 SQENVGSRFTVRIPL 261


>gi|83645119|ref|YP_433554.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83633162|gb|ABC29129.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 797

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 127/307 (41%), Gaps = 11/307 (3%)

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYS--IIPLPNAQTMLTFVNVT 546
            +    D    ++ S +++ +++   L  L      +  YS  +  + +++T        
Sbjct: 210 PKGHEMDEIGVLVNSTNNQLQAIDENLNKLKKAESRLKTYSEQLEQIVDSRTKELSEKNK 269

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +++   L    E      + +  F+ ++S+E+R+P   ++G   L   +    L+ KQ
Sbjct: 270 QLIKSNHDLRVAKEEAVSRAKARADFLANMSHEIRTPFNGVLGMISL---TLEEPLSEKQ 326

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +    +S   LL L+NDILD++ V+AG + L      L   + +V + +A   H  N
Sbjct: 327 KEQLNVAYSSGVALLELLNDILDISKVEAGKLTLENIAFDLRKTVEDVSRLLAQNAHAKN 386

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    D         D  R+ QI S +  NA+ F+  GS  +  +   N      V +
Sbjct: 387 VALYTNIDPAFPERVYGDPTRIRQIVSNLTGNAIKFTETGSVTVSLSLLKNQSVEICVSD 446

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  D  + +F+ F         +  G GLGL++    +   GG + + S     ++
Sbjct: 447 TGIGIEADRLEFIFSPFSQGDADITRKYGGTGLGLTLCRQLVTHMGGKIEVVSERGRGSS 506

Query: 784 INCRIPS 790
               +P 
Sbjct: 507 FMVTLPL 513


>gi|327481366|gb|AEA84676.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri DSM 4166]
          Length = 908

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S    L  +Q  Y+  I
Sbjct: 259 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKS---DLTPRQQDYLGTI 315

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DL+ +    +A   H   + +  ++
Sbjct: 316 EKSADSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSLV 375

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNG 727
                 S V D  RL Q+ + ++SNA+ F+++G T+ ++A  ++          SV++ G
Sbjct: 376 YRDTPLSLVGDPLRLKQVLTNLISNAIKFTNEG-TIAVRAMVEDDNAERAQLRISVQDTG 434

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +   +++F  F    +    Q  G GLGL I +  I   GG + + S  +  +   
Sbjct: 435 IGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFW 494

Query: 786 CRI 788
             +
Sbjct: 495 ISL 497


>gi|262395842|ref|YP_003287695.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
 gi|262339436|gb|ACY53230.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
          Length = 828

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 125/251 (49%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+S Q
Sbjct: 307 EKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSSHQ 363

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I +SS  LL L+NDILDL+ +++G ++L+     + +++ +      +K     
Sbjct: 364 QEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMVLFQSKATSKQ 423

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDF 719
           + + +     + +  + D  R+ Q+ + ++SNA+ F+  G  + +  + D       G  
Sbjct: 424 LELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGH-IRVDVSYDELSEKECGVL 482

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F V++ G  I +D   ++F  F         Q  G GLGL+I    +++ GG +  +S+
Sbjct: 483 MFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQLIATST 542

Query: 778 DEGVTTINCRI 788
               T     I
Sbjct: 543 KGVGTCFEFSI 553


>gi|298387781|ref|ZP_06997331.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259386|gb|EFI02260.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 419

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/379 (24%), Positives = 182/379 (48%), Gaps = 32/379 (8%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR-----LSPGTHIRN-IAATC 487
           K     + +++    +   D    + N  + +L      +     +    H RN IAA  
Sbjct: 40  KELTSILQNINVYYLLIDRD--FIVHNTNYYTLNHLTPVQGEIKRVGDLLHCRNAIAAGE 97

Query: 488 SRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLP----------- 534
              + +     +   I  +F ++R  K L  +++LLS+   E ++IP             
Sbjct: 98  CGKHEQCKLCCIRTFISKAFYEKRSFKKLDASMQLLSED--EKTVIPCDVSVSGVYLKIN 155

Query: 535 -NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              + +LT  +VT+    +R L  + E    AD++K++F+ ++S+E+R+PL  I+GF+ L
Sbjct: 156 GEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGL 215

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           + T    +   ++  Y + IS ++  LL LVNDI DL+ +DAG++   YS    NDLL E
Sbjct: 216 MAT---ATSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRE 272

Query: 654 VKQSIATKMHENNI-RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++     +++EN +  +   +  +     +++QR++Q+ + +L NAM F+  G  +    
Sbjct: 273 LEGLFGMRLNENPLVALVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKTGE-IRFGC 331

Query: 713 ARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             +   +  F V + G  IP++  + +F+RF       + +G GLGL++ ++ ++  GG 
Sbjct: 332 RMEGTDEVYFYVSDTGIGIPKEEQEKIFSRFTKLD--REMQGTGLGLTLSQTIVHNFGGR 389

Query: 772 VSISSSDEGVTTINCRIPS 790
             + S     +T    +P 
Sbjct: 390 FGVESEVGKGSTFWFILPL 408


>gi|259482698|tpe|CBF77424.1| TPA: Histidine kinase J7 [Source:UniProtKB/TrEMBL;Acc:Q6WJ24]
           [Aspergillus nidulans FGSC A4]
          Length = 1297

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 714 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 771

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 772 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 831

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G   +     D          F FSV + G  I
Sbjct: 832 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTICKSDREQCAANEYAFEFSVSDTGIGI 891

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 892 EEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 950


>gi|229143715|ref|ZP_04272137.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24]
 gi|228639771|gb|EEK96179.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24]
          Length = 883

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 465 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 705 SNVGEGSTFTVYIP 718


>gi|315125214|ref|YP_004067217.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013727|gb|ADT67065.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 896

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 7/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++ +   +A  IK+ F+ ++S+E+R+P+  I G   L    +      +   Y+E   
Sbjct: 513 LRQEKQKADEASAIKSQFLANMSHEIRTPINGIKGMHYLALQQQDWQ---QAKGYIEQAD 569

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            + ++LL ++ND+LD + ++AG ++L    + L  L  ++   +  ++   ++ +K+  D
Sbjct: 570 GALSVLLRVLNDVLDFSKMEAGKLELMQEPVNLKQLAEDIVGLMQFEVESKSLSLKLEYD 629

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                 +  D  RL QI   +L+NA+ F++KG  + LK  + +    FSV + G  I   
Sbjct: 630 SDAHLILNTDPIRLKQILLNLLNNAVKFTAKG-CITLKIWQSSKMTYFSVNDTGIGISSA 688

Query: 734 MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             K +F  F         Q  G GLGLSI +  + L GG + + SS+   +T    +P
Sbjct: 689 AQKQLFKPFSQADSSTSRQYGGTGLGLSICKKLVELMGGAIDLKSSEGHGSTFTFSLP 746


>gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1111

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 8/245 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +N  L++  +IK+ F+ + S+ELR+PL  IIG  D L     G L +K ++ +  I+
Sbjct: 430 LENQNIELKRLSQIKDEFLANTSHELRTPLHGIIGLADSLIDGATGKLPTKTTENLTMIA 489

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL LVNDILD + +    ++L   ++ L ++L+ V     + + + NI++     
Sbjct: 490 NSGRRLLTLVNDILDFSKLKHNTIELQLKSLGLWEVLDMVLVLSQSLVGQKNIKLINSVP 549

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSS 729
             L    AD  RL QI   ++ NA+ F+  G TV + A        N     ++ + G  
Sbjct: 550 DDLPGVEADENRLQQILYNLIGNAIKFTESG-TVEITACEKIIDESNHYIAVTISDTGIG 608

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED  + +F  F         Q  G GLGL++ +  + LH G + + S     +     
Sbjct: 609 ISEDKLEQIFASFEQGDGSTARQYSGTGLGLAVTKQLVELHCGTIEVRSKVAEGSQFTFT 668

Query: 788 IPSKE 792
           +P  +
Sbjct: 669 LPKAK 673


>gi|270293653|ref|ZP_06199855.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275120|gb|EFA20980.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 531

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 168/383 (43%), Gaps = 30/383 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRL---SPG 477
            + + +        G  ++++   + V  F     +  +N +    +   E+        
Sbjct: 166 REYKEREVRASNTLGSIMNNMGVDIYVNSFDSHD-MLYANRSMVEPYGGIEHFWGKKCWE 224

Query: 478 THIRNIAATCS----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
               +    C     R+  + +G       + S+D +R   +    + S      +    
Sbjct: 225 ALYSDKTGECEFCPKRHLIDENGHPTK---VYSWDYQRPFDKCWFRVFS------AAFAW 275

Query: 534 PNAQT--MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            + Q   ++T V++    + E  L    +     D +K++F+ ++S+E+R+PL +I+GF 
Sbjct: 276 VDGQMAHVITSVDIDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFA 335

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            ++          ++ +Y+  +  ++ +LL L++DILDLA ++AG +  N   + ++D  
Sbjct: 336 SIIAEL---DDREERQEYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFC 392

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V ++   K  +  + + +  D        D++RL+Q+ +  ++NA+ F+S+G  ++L+
Sbjct: 393 KDVMRNYDIK-EDKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSEG-QILLE 450

Query: 712 A--ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
                  G   FSV + G  I  D   +VF+RFV        +G GLGLSI +S I   G
Sbjct: 451 YHPVEGTGQIEFSVTDTGMGIAPDAVATVFDRFVKLNTFA--KGTGLGLSICKSIIEHLG 508

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G +   S     +    R P  E
Sbjct: 509 GTIGAESELGVGSRFWFRHPCAE 531


>gi|109900024|ref|YP_663279.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109702305|gb|ABG42225.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 903

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 11/250 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +       L E      +A   K+ F+ ++S+E+R+P+  IIG  D++  S    L   Q
Sbjct: 371 EQEMLNAELVESKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKS---DLTPTQ 427

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q++  +  SS IL++L+NDILD + V+AG + +      LN +   +  +I+ +  E N
Sbjct: 428 RQHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQEKN 487

Query: 667 IRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIF- 721
           + ++ I D     + + D  R+ Q+   + SNA+ F+  GS    +      ++   +  
Sbjct: 488 LNVRFICDPNIPPTLIGDPLRISQVLLNLTSNAVKFTRNGSITISITHDVIPNSDKVLLK 547

Query: 722 -SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             VK+ G  + ++    VF  F        R   G GLGL+IV+  ++L GG+V+  S  
Sbjct: 548 ARVKDTGIGMSKEQLGKVFESFTQADGTTSRDFGGTGLGLTIVKQLVHLMGGNVTAQSEL 607

Query: 779 EGVTTINCRI 788
              +T     
Sbjct: 608 NVGSTFEVTF 617


>gi|255943187|ref|XP_002562362.1| Pc18g05350 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587095|emb|CAP94759.1| Pc18g05350 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1302

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 699 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 756

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 757 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 816

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              + D  RL QI   ++ NA+ F+  G  V L   + + +        F FSV + G  
Sbjct: 817 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VKLTIRKSDREQCTTNEYAFEFSVSDTGIG 875

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 876 IEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 935


>gi|323493067|ref|ZP_08098201.1| histidine kinase [Vibrio brasiliensis LMG 20546]
 gi|323312715|gb|EGA65845.1| histidine kinase [Vibrio brasiliensis LMG 20546]
          Length = 1088

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/515 (16%), Positives = 194/515 (37%), Gaps = 28/515 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S+  T+N+       I      A+ + +++  +   N + + L+ ++   L        +
Sbjct: 156 SQHQTINEHELQIGVIFEQAMDAMVLLNESNQILDANDAALALFHMERTDLLGL-EIGSV 214

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           +  L+      +      ++E + +  +    + +   +     +  I +   +   +  
Sbjct: 215 VTDLKPGQIYEQLSEVPMFQEVLLT--QPLHLNDNNRRIALSGAIRYI-SIKSQRYILIT 271

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHL-------SEGVAVFGPDGRIKLSNPAFRSLWK 468
             + + +   +             + +L         G+  +  D      +     ++ 
Sbjct: 272 LRDTSSEYSAKMALKRNQTELEAVVRNLNLATQAGGIGIWSWDFDSNEVSWDERMYQMYG 331

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVL 526
            + +       +           +           +T F+ E + +   G +  +  +  
Sbjct: 332 VDPDLCDNNYAMWQERVHPDDLDHAEQSLLHARETLTQFNSEFRIVLPDGKVRWIKAAAD 391

Query: 527 EYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                    A  M    ++++     +  L  ++EA   A E K+ F+ ++S+E+R+P+ 
Sbjct: 392 VIFAQDTAEAIGMGGVNIDISKEKNTQDVLRNESEAAHAASEAKSMFLANMSHEIRTPMN 451

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G   LL  ++   L S Q   V  I  S+  LL+++NDILD + ++AG M L    +
Sbjct: 452 GVVGMLSLLSETE---LKSDQRTMVSSIKDSALTLLHIINDILDFSKIEAGKMSLESVPV 508

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L  LL      +  +     I + +  D  L    ++D  RL QI   ++ NA+ F+  
Sbjct: 509 ELQSLLERTLDVLHLQARNKGIEMYLTYDPSLPKMIMSDSVRLSQIMLNLIGNAVKFTES 568

Query: 705 G----STVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
                  + + A+  +          V++NG  + ++  K +F  F        R   G 
Sbjct: 569 TDERVGKIWVSASLGSNGIAPCIDLIVEDNGIGMTKEQLKRLFKSFTQADTSTTRLYGGT 628

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI +S ++L GG +S+ S     +  +  +P
Sbjct: 629 GLGLSITQSLLDLMGGTISVESEFGVSSRFSIEVP 663


>gi|307264990|ref|ZP_07546551.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919975|gb|EFN50188.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 114/237 (48%), Gaps = 3/237 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  E L + +E+KN F+ ++S+EL++PLT+I GF   +    L   NS+  +Y+  I  
Sbjct: 227 NKMAEELGQLEEMKNEFISNISHELKTPLTSIKGFA--ITAMDLVEKNSELYEYLNIIDE 284

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  LV+++LD + ++   +KL++  + L+ L+ +    +      + + +      
Sbjct: 285 ETDRLSRLVDELLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNDGVNLICKKKI 344

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D  RL Q+   I+ N +   S+G  V +     +   +  +++ G  IP++  
Sbjct: 345 DRVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAVIRIEDQGQGIPQEEI 404

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K +F++F    +  +  G GLGL+I +  I  H G +++ S     +     +P K+
Sbjct: 405 KYIFDKFYRGKNN-KYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELPLKD 460


>gi|47569150|ref|ZP_00239838.1| sensor histidine kinase SrrB, putative [Bacillus cereus G9241]
 gi|47554221|gb|EAL12584.1| sensor histidine kinase SrrB, putative [Bacillus cereus G9241]
          Length = 580

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 238 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 290

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+   LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 291 KL---PSELVKLFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 342

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 343 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 391

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 392 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 451

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 452 ALTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 511

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +++SS  
Sbjct: 512 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSIV 565

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 566 GEGTTFSVYLPNR 578


>gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402]
          Length = 676

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 161/375 (42%), Gaps = 23/375 (6%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           L    G+ +   +    +F PD      +P    L     + L   T IR +        
Sbjct: 9   LNFKLGKYLTESNIAYIIFSPDYVPLFWSPEAERLLP---DYLIKNTKIR-LQDYLKTVL 64

Query: 492 NESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
            E D   L A I ++               L   + L++S     +    +T  ++T   
Sbjct: 65  LEEDYIRLSAFIKSNPKTAAFEAKFDKPSSLSDKTALKFSFTQQDDNNFFVTIDDITKQK 124

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             ER L    +   KA+ +++ F+ +VS+E+R+P+  IIG  +L+  +   +L+ +QS+Y
Sbjct: 125 LKERFLIIARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINET---NLDEEQSEY 181

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              ++ S+ +LL LVND+LD + +++G M +  +   L D + +    I+ + H+  + I
Sbjct: 182 TRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEI 241

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--------- 718
            V    K+  F+  D  RL Q+    + NA+ F+  G   V +K   +N           
Sbjct: 242 VVDISDKIPDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDPYAAKHF 301

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             +F V + G  +  +    +FN F     A   +  G GLGL+I ++ I +  G + I 
Sbjct: 302 FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIK 361

Query: 776 SSDEGVTTINCRIPS 790
            +    +    +IP 
Sbjct: 362 DNISRGSVFWFKIPL 376


>gi|323498994|ref|ZP_08103976.1| sensor protein TorS [Vibrio sinaloensis DSM 21326]
 gi|323315930|gb|EGA68959.1| sensor protein TorS [Vibrio sinaloensis DSM 21326]
          Length = 959

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 128/262 (48%), Gaps = 9/262 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +T                     +   +A   K++F+  +S+E+R+P+  ++G   LL+
Sbjct: 437 ERTHQLQQANERLNEEVENHAHARQLAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQ 496

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 LN +Q+ YV+ I+ S + LL ++ND+LD + ++AG +++      L  ++ +V+
Sbjct: 497 DE---GLNKQQAYYVDVINRSGSTLLAILNDVLDYSKIEAGHLEIRPVDFDLRAMVEDVE 553

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           Q +  +  E ++++  + + +LG +   D  R+ Q+ + ++ NA+ F+  G  V +  A 
Sbjct: 554 QLLHGRATEKHLQLSCLVESELGRYWRGDMTRISQVLNNLVGNAIKFTDHGH-VDIYVAE 612

Query: 715 D---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGG 770
           D    G  +F V ++G  I     +++F+ F   +     + G GLGL+I +  +   GG
Sbjct: 613 DPEQPGRVLFEVSDSGIGISPSEQQNLFDAFTQASGGLSSKGGTGLGLAISKKIVEAMGG 672

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            +S+ SS    +     IP  +
Sbjct: 673 ELSLESSAGQGSRFWFSIPLAQ 694


>gi|239997165|ref|ZP_04717689.1| putative two-component member protein [Alteromonas macleodii ATCC
           27126]
          Length = 1033

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/494 (17%), Positives = 195/494 (39%), Gaps = 29/494 (5%)

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
                AI   D    ++  N +   ++           +  E++    +    PE+ +  
Sbjct: 227 DTAVDAILTVDDKGIIKTANPAVERIYGY---------TQQEIIGMHAAEVVTPERRHLY 277

Query: 373 T---WKENIFSVYKSSETHKDTWHL-PNGQTLHV---IVTSNPRGGTIWM--FENLTVQV 423
               + + +    +   T ++   L  +G+ + V   +  +   G  +++    +L  + 
Sbjct: 278 GDDFFSQRVVPTEQIIGTGREVEVLRKDGERIPVRLGVGYTKIDGKPVFVSFASDLRKRK 337

Query: 424 DLETKYNTLVKVQGETIDHLSEGVA---VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           ++E             I ++  G+A   +  P   +   + A   +        +     
Sbjct: 338 EMEDALRESEAKFRSLISNIP-GMAYRCLSMPGWPMVFISDAVTEVTGYPPEDFTLPNPK 396

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R+          E            S++    +  G ++ + +  ++             
Sbjct: 397 RSFTDLYHPDDVERLSSISPDVGAFSYEYRIVAKSGEVKWVIEHGVQVKDDDGMVLYVDG 456

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T     E  L    E   +A   + +F+ ++S+E+R+P+  IIGF+DL+      
Sbjct: 457 FISDITHRKVMENELKAAKEKAEQAAAARTAFLANMSHEIRTPMNAIIGFSDLMLGE--- 513

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L  +Q  ++  I+ S+  LL+L+NDILD A +D G + L+Y   ++ + L+ V  +   
Sbjct: 514 ALREEQKSHLTTINRSARSLLHLLNDILDSAKLDKGKLDLDYRDFLIREELDLVISTFWL 573

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +     + + +  D  + + +    +R+ Q+ + ++ NA+ F+ +G  V +    D    
Sbjct: 574 EAKRKKVGLVLNVDDSVANGYRGVPERMRQVLNNLIGNAVKFTHEGE-VTINVKSDEKYV 632

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F V + G  + ++  + VF+ F         +  G GLG +I +  + L GG++  +S 
Sbjct: 633 YFDVTDTGIGMTQEQVERVFDPFSQADASMSRKYGGTGLGTTISKQLVELMGGNICATSE 692

Query: 778 DEGVTTINCRIPSK 791
               TT   R+P +
Sbjct: 693 KGKGTTFTFRLPLE 706



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 16/169 (9%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            D+  +     ++Q    D   + +      G IK +NPA   ++   +  +  G H   
Sbjct: 209 RDVMVRAIESERIQSAITDTAVDAILTVDDKGIIKTANPAVERIYGYTQQEI-IGMHAAE 267

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +     R+     G D F+  +   +    + +    L  D   E   + L    T +  
Sbjct: 268 VVTPERRHL---YGDDFFSQRVVPTEQIIGTGREVEVLRKDG--ERIPVRLGVGYTKIDG 322

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
             V  S  ++    ++ E   +  E K           RS ++NI G  
Sbjct: 323 KPVFVSFASDLRKRKEMEDALRESEAK----------FRSLISNIPGMA 361


>gi|330949799|gb|EGH50059.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae Cit 7]
          Length = 917

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|295083823|emb|CBK65346.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 547

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 157/381 (41%), Gaps = 28/381 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + + +     K     ++++   + V  F     +  +N +  + +   E+        
Sbjct: 166 REYKEREVRASKTLSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEGKKC-- 222

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKS-------LQGTLELLSDSVLEYSIIPL 533
                     Y +  G   F       D+  +         Q   +     V   +   +
Sbjct: 223 ------WQALYKDKTGECEFCPKKHLIDENGQPTKVYSWDYQRPFDKCWSRVFSAAFAWI 276

Query: 534 PNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  
Sbjct: 277 DGQIAHVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFAS 336

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  S       ++  YV+ +  ++ +LL L++DILDL+ ++AG +      + +     
Sbjct: 337 LLIES---DDKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCE 393

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++ ++   K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  ++L+ 
Sbjct: 394 DIMRNYDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEG-QIMLEY 451

Query: 713 AR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
               ++ +  F+V + G  I  D    VF+RFV        +G GLGLSI  S I   GG
Sbjct: 452 RHKAESNEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSFS--KGTGLGLSICRSIIKHLGG 509

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            +   S     +      P +
Sbjct: 510 TIGAESEIGVGSRFWFTHPLR 530


>gi|269965226|ref|ZP_06179360.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
 gi|269830212|gb|EEZ84439.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
          Length = 932

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  V ++    +GD     F V++ G
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CR 787
             
Sbjct: 512 FT 513


>gi|262395232|ref|YP_003287086.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25]
 gi|262338826|gb|ACY52621.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25]
          Length = 784

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 156/377 (41%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   + +  ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEIAEHIVDTDQKVF-------ADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S 
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 312 --PLTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 369

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  ++
Sbjct: 370 ALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVED 429

Query: 717 G--DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                I  V++ G  IPED    +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 DFATIIMEVEDTGIGIPEDELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 490 ITVASEEGFGSTFTVSI 506



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVS 267
                N + ++ T   G    + +G S   ++ +EI + ++ +        +    E   
Sbjct: 176 VFSGCNRAMEELT---GKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKHYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 93/313 (29%), Gaps = 59/313 (18%)

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           + ++ +   +EI++R+ +  A E+   +  + +                           
Sbjct: 108 LQQNIEKLNQEIEERIKAEEAREEAMQDLENEVFQRERT--------------------- 146

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
            ++ + ++       +      I   + +      NR+  EL       L      D   
Sbjct: 147 -QLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYS 205

Query: 354 -ELLEFLRSANK----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            E+ E +   ++      + + ++ W E         E  K  ++  +G+ L        
Sbjct: 206 KEIAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL-------- 257

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-------GVAVFGP--------- 452
             G +    ++T +   E       + +   I  +S        G+              
Sbjct: 258 --GLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSPLTE 315

Query: 453 --DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                ++  N +  +L     + +      R          N  D      +I ++   E
Sbjct: 316 EQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESI-SALMAE 374

Query: 511 RKSLQGTLELLSD 523
           +K L+  LE LSD
Sbjct: 375 QKGLRFDLERLSD 387


>gi|254883253|ref|ZP_05255963.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642628|ref|ZP_07997274.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
 gi|254836046|gb|EET16355.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385716|gb|EFV66649.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
          Length = 554

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 137/259 (52%), Gaps = 9/259 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + + +LT  +VT   +    L E       A E K +F+ ++S+E+R+PL  I+GF  LL
Sbjct: 160 DDKVLLTVRDVTRQKKILDELEEARRNAELAGEQKTAFLANMSHEIRTPLNAIVGFAGLL 219

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            T    + +  +  YVE I  ++ +LL LVNDILD++ ++AG ++  Y+ + +N ++ E+
Sbjct: 220 GT----ASDQDRISYVEIIKGNTNMLLQLVNDILDMSKIEAGTLEFIYTDVDVNQIMREL 275

Query: 655 KQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +     ++ E ++ +++I + KL       ++ R+ Q+ S  LSNA  ++ +GS + +  
Sbjct: 276 EGIFRLRLEEADVPVRIIFEPKLPVCFIHTEKNRISQVISNFLSNAFKYTVQGS-ITMGY 334

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                   F V + G+ IPED    VF RF       +R+G GLGLSI  + I   GG +
Sbjct: 335 EIRENGICFYVSDTGTGIPEDKVSQVFERFTKLDA--KRQGTGLGLSISRTIIKKMGGEI 392

Query: 773 SISSSDEGVTTINCRIPSK 791
            ++S     +T    +P K
Sbjct: 393 GVTSKYGEGSTFWFVLPEK 411


>gi|315181686|gb|ADT88599.1| sensor histidine kinase LuxQ [Vibrio furnissii NCTC 11218]
          Length = 858

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 153/375 (40%), Gaps = 29/375 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            + +   K   +  +       ++  +G +   NP+  S      + L       ++ + 
Sbjct: 351 QRLSDQEKQFEDLFNFALSPTILWTAEGELIRMNPSAHS------HFLRNNADDHSLFSV 404

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----PNAQTMLTF 542
             R             I+   + E          +   V+ +++ P+         +   
Sbjct: 405 LKRQLIPQIKLAAQGEILKEVNTE----------VDGRVILWNLSPIVVENRIESIITQG 454

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT    AE+      +   ++  ++  F+  +S+ELR+PL  I+G + LLK +     
Sbjct: 455 QDVTSIAEAEKQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKRTV---T 511

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q++ V  + +S   LL ++NDILD + ++ G  ++  +   L D+++ +++      
Sbjct: 512 EKEQAEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVSAIERIYRPLC 571

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD 718
            E  + + + ++ G       D+ RL QI   +L+N++ F+ +G+    + L        
Sbjct: 572 REKGLTLTLNTNIGDDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQLHLIETEAGAK 631

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              +V + G  I E     +F  FV       R   G GLGL+IV S I + GG + + S
Sbjct: 632 LEITVLDTGVGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIEMLGGSIEVKS 691

Query: 777 SDEGVTTINCRIPSK 791
           S    T     +P +
Sbjct: 692 SFGVGTRFTIELPLE 706


>gi|262404177|ref|ZP_06080732.1| sensor histidine kinase [Vibrio sp. RC586]
 gi|262349209|gb|EEY98347.1| sensor histidine kinase [Vibrio sp. RC586]
          Length = 681

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/446 (21%), Positives = 179/446 (40%), Gaps = 41/446 (9%)

Query: 380 SVYKSSETHKDTWHLPNG------QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
           S Y ++E  K+  +  +         + +I  S P           TV + LE     L+
Sbjct: 97  SWYLAAENEKEGLYFWSPVYIDAYTQVEMITVSTPYYRNGVFAGVATVDLSLE----GLI 152

Query: 434 KVQGETIDHLSEGVAVFGPDGR-IKLSN-----PAFRSLWKTEENRLSPG-----THIRN 482
           K   ET +  + GV +    G  I   N      A  S +   E            HI  
Sbjct: 153 KFVAETAEQYNLGVNLKDAFGVDIVSHNFRIYENALVSYYNFGEFNWQIEVVNATHHIDE 212

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNAQTM 539
           I         +     L   ++  +          + +++  V    E  II +      
Sbjct: 213 IIFNLIINIEKRLMPILLLCVMVGYFLINHYWIRPIVMIAKKVNESREGEIIDIRYKSQD 272

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L   + 
Sbjct: 273 EIRHLIDTFNQKTINLEVEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDE- 331

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L +KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS+  L  ++  +K   +
Sbjct: 332 --LTAKQRQHLTSLYESGEHMMTLLNEILDYSKIEQGKFELDYSSFPLRSIIGSIKSIYS 389

Query: 660 TKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAAR 714
           +   E  ++  + S+      +  D+ RL QI   +LSNA+ F+ +G  V +    +A +
Sbjct: 390 SLCFEKGLKFHLNSEITDTRWYYGDKARLRQIIFNLLSNAVKFTERG-FVTIGLAEEATQ 448

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +    I  V+++G  I ++    +F  F        RR  G GLGL+IV+    L  G V
Sbjct: 449 EGHYLIIKVQDSGIGIAKEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAALMNGTV 508

Query: 773 SISSSDEGVTTINCRI------PSKE 792
           S+ S     T    R+      P KE
Sbjct: 509 SVQSEVGRGTCFEVRVKLAITEPIKE 534


>gi|91226808|ref|ZP_01261461.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01]
 gi|269965795|ref|ZP_06179891.1| Aerobic respiration control sensor protein ArcB [Vibrio
           alginolyticus 40B]
 gi|91188939|gb|EAS75223.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01]
 gi|269829593|gb|EEZ83831.1| Aerobic respiration control sensor protein ArcB [Vibrio
           alginolyticus 40B]
          Length = 784

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 156/377 (41%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   + +  ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEIAEHIVDTDQKVF-------ADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S 
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 312 --PLTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 369

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  ++
Sbjct: 370 ALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVED 429

Query: 717 G--DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                I  V++ G  IP++    +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 DFATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 490 ITVTSEEGFGSTFTVSI 506



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVS 267
                N + ++ T   G    + +G S   ++ +EI + ++ +        +    E   
Sbjct: 176 VFSGCNRAMEELT---GKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKHYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 93/313 (29%), Gaps = 59/313 (18%)

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           + ++ +   +EI++R+ +  A E+   +  + +                           
Sbjct: 108 LQQNIEKLNQEIEERIKAEEAREEAMQDLENEVFQRERT--------------------- 146

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
            ++ + ++       +      I   + +      NR+  EL       L      D   
Sbjct: 147 -QLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYS 205

Query: 354 -ELLEFLRSANK----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            E+ E +   ++      + + ++ W E         E  K  ++  +G+ L        
Sbjct: 206 KEIAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL-------- 257

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-------GVAVFGP--------- 452
             G +    ++T +   E       + +   I  +S        G+              
Sbjct: 258 --GLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSPLTE 315

Query: 453 --DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                ++  N +  +L     + +      R          N  D      +I ++   E
Sbjct: 316 EQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESI-SALMAE 374

Query: 511 RKSLQGTLELLSD 523
           +K L+  LE LSD
Sbjct: 375 QKGLRFDLERLSD 387


>gi|37913120|gb|AAR05382.1| probable two-component sensor [Aeromonas hydrophila]
          Length = 1252

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/581 (17%), Positives = 219/581 (37%), Gaps = 47/581 (8%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID-VSKEITVNDQ 304
               +R            + +S +  G     +    L   G   +  D +S++      
Sbjct: 362 SPSAERRHRYLFSRAFVLDPLSYVV-GIQHEARKTETLLRSGTVAMIRDFISEQAIAERY 420

Query: 305 LTHTYEILHNLTVA----------IAIFDQNRYLQFHNRSFVELWEIDLAFLATNP---- 350
                     +  A          +A+        + N  F++   I      + P    
Sbjct: 421 GKLATRQFDRIEDALRCVATELCDVAVLPLRVAKYYINSKFLDSLLITGELFDSIPIGAA 480

Query: 351 ----SNDELLEFLRSANKL---PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                + ++L  +         P++L   + +  + S  ++    +          L ++
Sbjct: 481 FAVAPDRQILRDILDKVITIIPPDELEGLSNRWRVSSQQEAITWQEFVREFAVFIVLVLL 540

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           +T       + + + +  +   E   +  +K   + +D     +    P  R+ L N ++
Sbjct: 541 LTIWVSLWGLSLHKQVRQRRVAEMALSAQLKFIEDLVDGTPHPIYAREPRWRLILCNSSY 600

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              +  E++RL       ++   C R+ +      DL  A+      +       L + +
Sbjct: 601 AGFFGDEKHRLLG----SSMEEDCRRWPFMAPLFEDLSTALRVRCTHQG---DHRLPMPT 653

Query: 523 DSVLEYS-IIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +V  Y  + P  +        +  +++V++  R    L   ++  ++A+  K++F+  +
Sbjct: 654 GAVDVYHWVQPYYDLEGNVQGGIGGWIDVSERQRLLDELALASQDAQEANRAKSTFLATM 713

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+P+  IIG  +L  T + G L+ +    +     S+  LL+L+ DILD++ +++G
Sbjct: 714 SHEIRTPMNAIIGLLEL--TLRRGRLHEEDKSSLTIAHGSANDLLSLIGDILDISKIESG 771

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L      +  L   V         + N++++ ++D        D     QI S ++S
Sbjct: 772 RLELMPEPHDIVALTGAVVTVFNALARQKNLQLEFVAD-DPRWVQIDGLCYKQILSNLVS 830

Query: 697 NAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQR 751
           NA+ ++ +GS  V L++   +G       +++ G  I       +F  F   +     QR
Sbjct: 831 NAIKYTEQGSVQVELQSKTSDGWCTLYLVIRDTGIGIAPAEQARLFQPFGQASQPEHIQR 890

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPS 790
            G GLGL I  S     GG + + S     T I+   ++P 
Sbjct: 891 SGTGLGLMIARSLCESMGGSLQLESEPGRGTCISIEMKLPL 931



 Score = 39.2 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 13/144 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-------KNT 226
           ++ ++ +  +    LS  +   + L D     ++ R+    ++  N SY           
Sbjct: 552 LHKQVRQRRVAEMALSAQLKFIEDLVDGTPHPIYAREPRWRLILCNSSYAGFFGDEKHRL 611

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST----LEHGNNKSYKIVRV 282
               +              E++   +      + +    + T    + H     Y +   
Sbjct: 612 LGSSMEEDCRRWPFMAPLFEDLSTALRVRCTHQGDHRLPMPTGAVDVYHWVQPYYDL-EG 670

Query: 283 LNSFGEAGIAIDVSKEITVNDQLT 306
               G  G  IDVS+   + D+L 
Sbjct: 671 NVQGGIGGW-IDVSERQRLLDELA 693


>gi|88658417|ref|YP_507680.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599874|gb|ABD45343.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas]
          Length = 470

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 5/247 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQ 606
              A   L E  E   + +  K+ F+ +VS+ELR+PL +IIGF++++K   +G++ N   
Sbjct: 214 QYNANLKLKEAKEVAEQENVSKSQFLANVSHELRTPLNSIIGFSEMMKAESMGAIENVHY 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+  I  +   LL+L+NDILD +  +A  + + +    L  +++     I  +  E  
Sbjct: 274 KEYINDIHNAGVHLLSLINDILDFSKAEADKLVVEFVKFDLGKVISSCFNMILPRAEEAK 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVK 724
           +R++ +        VAD +R+ Q+   +LSN++ F+ +   V L    D  N   +  V 
Sbjct: 334 VRLEQVLPSNQIIMVADPKRMKQVIINLLSNSIKFTPENGCVKLVVEYDLENSMIVIEVI 393

Query: 725 NNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  I +     V + F  V + H  +  G GLGL + +  + L  G   I S     T
Sbjct: 394 DNGIGIAQQDLYKVMSVFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFKIKSEPNLGT 453

Query: 783 TINCRIP 789
            +    P
Sbjct: 454 IVTLMFP 460


>gi|331010550|gb|EGH90606.1| PAS protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 638

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 166/378 (43%), Gaps = 21/378 (5%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E       +     ++     + V   +G +++ N ++  ++  +   +   +    + 
Sbjct: 3   AERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVL 62

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTM 539
                    +  +    A  T+   +R    G  ++     + + I+P  ++       +
Sbjct: 63  GNAFEAREYAADYQRVMASNTALILDRPLRIGDRQM----TIYHWILPFRDSLGEVQGII 118

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSK 598
             ++++++  +    L    E    A   K++F+  +S+E+R+P+  +IG  +L LK + 
Sbjct: 119 GGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRAD 178

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L+      +E   +S+  LL+L+ DILD+A +++G + LN     L  L+  V +  
Sbjct: 179 HGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVF 235

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
                + ++ + +  D ++ +  + D  R  QI S ++SNA+ F+  G   ++L+AA   
Sbjct: 236 DGLARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESP 295

Query: 717 G----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGG 770
                    +V+++G  I  +  + +F  F    + GQ  R G GLGL I  S   + GG
Sbjct: 296 DPQLLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGG 355

Query: 771 HVSISSSDEGVTTINCRI 788
           ++S+ S     T I+  +
Sbjct: 356 NLSLDSVPGQGTRISMNL 373



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
               + L +     + L +     ++ RD+ G +   N SY +         +  IG+S 
Sbjct: 1   EAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLR---VFSAQREDIIGKSA 57

Query: 242 K--LFKEEIKKRMISSSALEKNFCETVSTLEH----GNNKS---YKIVRVLNSFGEA--- 289
              +     + R  ++         T   L+     G+ +    + I+   +S GE    
Sbjct: 58  TEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRDSLGEVQGI 117

Query: 290 -GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            G  ID+S+   + + L    E     + A + F
Sbjct: 118 IGGWIDISERRQLIEDLQAAKEQADAASRAKSTF 151



 Score = 37.6 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 30/271 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  + DQ      ++      I + D+   L+  N S++ ++      +    + + +
Sbjct: 2   AAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGV 61

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L     A +                + +          +     L    +     G I  
Sbjct: 62  LGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTI-YHWILPFRDSLGEVQGIIGG 120

Query: 416 FENLTVQVDL-------ETKYNTLVKVQGETIDHLSEGV-----AVFG---------PDG 454
           + +++ +  L       + + +   + +   +  +S  +     AV G           G
Sbjct: 121 WIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHG 180

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN----ESDGWDLFAAIITSFDD- 509
            +  S  A    + +  + L     I +IA   S   +     ++   L  +++  FD  
Sbjct: 181 ELDRS--AIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 238

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +K L   LEL S    +  I PL   Q +
Sbjct: 239 ARQKDLDLVLELDSRINADVLIDPLRFKQIL 269


>gi|193215941|ref|YP_001997140.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089418|gb|ACF14693.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 500

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 109/244 (44%), Gaps = 3/244 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                 +      L++ +++   F+ ++S++LR+PL +I G+ + +   K      ++ Q
Sbjct: 242 NEMAAKIEHTMNLLKENEKLLREFIANISHDLRTPLASIEGYMETIILKKHLLSEKEKQQ 301

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   I  ++  L  LVN +LDL+ ++A  +KL      + +L+ +V      +   +NI 
Sbjct: 302 YFNTILKNTRTLNRLVNQLLDLSKLEARQVKLKPEPFSITELIQDVMLKFNPQATASNIS 361

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNG 727
           +            AD   + ++   ++ NA + + +   + ++    D       V++ G
Sbjct: 362 LNAHFPSHTPFVFADLGLIDRVLQNLIGNAFNHTEENGCIDVEIEMLDEYTMYVRVQDTG 421

Query: 728 SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +  K +F+RF          + G GLGL+I +  + LH   + + S+    TT +
Sbjct: 422 KGIAPEDLKHIFDRFYQGDKVRSKHKSGAGLGLTIAKKIMELHHSTLDVESTLGVGTTFS 481

Query: 786 CRIP 789
            ++P
Sbjct: 482 FKLP 485


>gi|17228774|ref|NP_485322.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130626|dbj|BAB73236.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 498

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 153/376 (40%), Gaps = 9/376 (2%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT--H 479
           +  LE             ++ +S+ V      G +   NPA   +    +          
Sbjct: 122 KHRLERDIRENRDRLATLLNSISDAVIATDESGNVTFMNPAAEEITGWHQADAIGHEVSQ 181

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNA 536
           I NI    +    E+    +       + DE  SL    G    + DS      +P    
Sbjct: 182 IFNIIDEVTENVLENPVTKVLREQKVVYLDEYTSLITKDGRRVPIGDSASPIMGLPNKIN 241

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             ++ F ++++  + E  L +  +  R+ + +K+ F+  VS+E R+PL+ I    +L++ 
Sbjct: 242 GVVIVFWDLSERRQTE-LLEQALQKERELNHLKSLFISTVSHEFRNPLSVIQTAIELIEL 300

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  +K++ Y+  I  +   +  L+ D+L +   +A  ++ N   + L +   E+ +
Sbjct: 301 HGQNLTETKKNTYIRRIKGAVQSMKLLMEDVLFMGKSEAAKLECNLVLLNLKEFCQELIE 360

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAAR 714
              T +  +   I      +  +   D + L  IF  +LSNA+ +S +  T+   L   +
Sbjct: 361 EF-TAVETSGHEIIFTCSDETTNAFMDERLLHYIFVNLLSNAVKYSPQNETIRFDLTCDQ 419

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             G  IF +++ G  IP      +F  F   ++    +G GLGL IV+  +  H G ++ 
Sbjct: 420 TKGVAIFQIQDEGIGIPIADQSHLFESFYRASNSQSIQGTGLGLVIVKRCVEAHKGEIAF 479

Query: 775 SSSDEGVTTINCRIPS 790
           SS +   TT    +P 
Sbjct: 480 SSQEGMGTTFTITLPL 495


>gi|262170675|ref|ZP_06038353.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           MB-451]
 gi|261891751|gb|EEY37737.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           MB-451]
          Length = 785

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQLELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  +     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDG-----RKSFFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L S V  D  RL Q+   ++SNAM F+ +G  V  + A  D   
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQY 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            D    V++ G  IPE+  + +F  +             G G+GL++    I L GG +S
Sbjct: 432 ADITIEVEDTGIGIPEEEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS----- 267
           +    N + ++ T   G    + +G +   ++++EI + ++ +     N    ++     
Sbjct: 176 EFSGCNRAMEELT---GKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKSFFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|256842335|ref|ZP_05547838.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256735942|gb|EEU49273.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 943

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    +    A+  K+ F+  +S+E+R+P+  I+G + +   +       K    +E + 
Sbjct: 543 IQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI--DNTDKIKDCLEKVI 600

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL L+ND+LD++ +++G ++L + +      L + +     +     I  + I  
Sbjct: 601 MSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILA 660

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
             L    + D  RL Q+ S +LSNA+ F+     + L+ ++   D       F V + G 
Sbjct: 661 SDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGC 720

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F  F         +  G GLGLSIV+ F  L GG + ++S     +T   
Sbjct: 721 GIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTV 780

Query: 787 RIP 789
            +P
Sbjct: 781 DLP 783


>gi|311694984|gb|ADP97857.1| signal transduction histidine kinase [marine bacterium HP15]
          Length = 775

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 7/257 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +T           R  RAL +  E   +    + +F+  +S+E+R+PL  ++G   L   
Sbjct: 260 RTREISEKNDALQRGNRALVKAKEDAVRRARARANFLASMSHEIRTPLNGVLGMLGLALE 319

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L+S Q   +E    +   LL L+NDILD++ V+AG + L      +  L+ E   
Sbjct: 320 ---GELDSAQRNRIEIALNAGESLLGLLNDILDISKVEAGKLSLENIPFSVRHLIEECAT 376

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             A +     I +    D  L   F+ D  R+ Q+ + +LSNA+ F+ +GS V LKAA  
Sbjct: 377 LHAQQARRKRIHLVTEIDPDLPEDFLGDPTRVRQVLNNLLSNAIKFTDEGS-VKLKAAYS 435

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
            G     V + G  +  +    +F+ F        R   G GLGL++    +    G + 
Sbjct: 436 GGSLRIDVVDTGIGMSTEGLHRIFSPFSQADAETTRLYGGTGLGLTLCRQLVERMHGQIL 495

Query: 774 ISSSDEGVTTINCRIPS 790
           + S +   T     +P 
Sbjct: 496 VDSREGSGTHFTVTLPL 512


>gi|301312222|ref|ZP_07218139.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 20_3]
 gi|300829644|gb|EFK60297.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 20_3]
          Length = 943

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    +    A+  K+ F+  +S+E+R+P+  I+G + +   +       K    +E + 
Sbjct: 543 IQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI--DNTDKIKDCLEKVI 600

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL L+ND+LD++ +++G ++L + +      L + +     +     I  + I  
Sbjct: 601 MSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILA 660

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
             L    + D  RL Q+ S +LSNA+ F+     + L+ ++   D       F V + G 
Sbjct: 661 SDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGC 720

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F  F         +  G GLGLSIV+ F  L GG + ++S     +T   
Sbjct: 721 GIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTV 780

Query: 787 RIP 789
            +P
Sbjct: 781 DLP 783


>gi|167748589|ref|ZP_02420716.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662]
 gi|167651903|gb|EDR96032.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662]
          Length = 1088

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 119/248 (47%), Gaps = 11/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +AL    EA +KA+E K+SF+  +S+++R+P+  I+G T +  +        K  + 
Sbjct: 683 RNRKALLAAYEAAKKANEAKSSFLAQMSHDIRTPMNAIMGMTSIAASRINDP--EKVREC 740

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  SS+ LL+L+N+ILD++ ++ G ++L      L +L+ ++      +  +    +
Sbjct: 741 LTKIDMSSSHLLDLINEILDMSKIEKGKIELTEEPFCLRELITDINSITRPEALQKGQEL 800

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFS 722
                D     F+ D  R+ Q+   +++NA+ ++  G  +I++     G       F+F+
Sbjct: 801 LFRTVDVVHTDFIGDAGRIRQVLINLITNAVKYTQNGGRIIVEVQEVTGRTPGAASFVFT 860

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++NG  +  D    +F  F         + +G GLG+SI +  ++   G++   S    
Sbjct: 861 VEDNGIGMDPDFLNYIFVPFSRADDSKVRRVQGTGLGMSIAQGIVSAMNGNIQAESRKGQ 920

Query: 781 VTTINCRI 788
            +     +
Sbjct: 921 GSRFIVTL 928


>gi|320323404|gb|EFW79492.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. glycinea str. B076]
          Length = 917

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|163746272|ref|ZP_02153630.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanibulbus
           indolifex HEL-45]
 gi|161380157|gb|EDQ04568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanibulbus
           indolifex HEL-45]
          Length = 683

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/406 (23%), Positives = 155/406 (38%), Gaps = 44/406 (10%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +W F  +T++            +  E I  + EG   F    R+   N  F        +
Sbjct: 281 LWAFRRVTLKK------QEAHALLAEGIGSIQEGFIAFDEKERLVTVNSKFLEYHPEIAD 334

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEYSI 530
            L PG  I  +       +      +     I       ++  GT  LE+  +  L+ + 
Sbjct: 335 LLVPGKTIEELLRHWVARHQHPKDVEEREKWIAKRLARFRNPTGTFNLEVSDNFWLKVTE 394

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              P+  T+  + +VT   RA  A        + AD  K  F+ +VS+ELR+PLT I G 
Sbjct: 395 SRTPHGYTVGIWTDVTTEKRALDA-------AKAADREKTEFLNNVSHELRTPLTVISGR 447

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISA-------------------------SSTILLNLVN 625
              L+ S+      +    +                              SS  +L LV 
Sbjct: 448 ASFLQHSEKLPQARRMQTALTNSPNATPDIRSSVNEFQDFVSDQAGGIAGSSKHMLRLVE 507

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD   V  G M+L+   I  +++   V   +        + +    D    +  A+  
Sbjct: 508 DLLDWTKVARGKMELDLQEIEASEIARSVADDLRPDAEAKGLTLTYE-DNGTATANAEPV 566

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL QI   ++SNA+ F+  G  + LK  +   +  F V + G  I E+  K VF RF   
Sbjct: 567 RLRQILYNLISNAIKFTRSG-NIHLKMHQAAEEITFCVTDTGCGISEENIKRVFLRFQQV 625

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                R   G+GLGL+I E    LHGG +S+ S  +  +T    +P
Sbjct: 626 DGSMSRENGGLGLGLAIAEQLATLHGGGLSLESEVDVGSTFRLTLP 671



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 55/144 (38%), Gaps = 2/144 (1%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            +      E + ++      FD+   L   N  F+E        L    + +ELL    +
Sbjct: 292 QEAHALLAEGIGSIQEGFIAFDEKERLVTVNSKFLEYHPEIADLLVPGKTIEELLRHWVA 351

Query: 362 ANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
            ++ P+ +   + W     + +++  T      + +   L V  +  P G T+ ++ ++T
Sbjct: 352 RHQHPKDVEEREKWIAKRLARFRNP-TGTFNLEVSDNFWLKVTESRTPHGYTVGIWTDVT 410

Query: 421 VQVDLETKYNTLVKVQGETIDHLS 444
            +           + + E ++++S
Sbjct: 411 TEKRALDAAKAADREKTEFLNNVS 434


>gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 2457T]
 gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 2457T]
 gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor
           [Shigella flexneri 2002017]
 gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T]
 gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304]
          Length = 949

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPCVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|66046927|ref|YP_236768.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257634|gb|AAY38730.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Pseudomonas syringae pv.
           syringae B728a]
          Length = 917

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|23014385|ref|ZP_00054204.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1193

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 167/392 (42%), Gaps = 24/392 (6%)

Query: 413 IWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTE 470
           + +F +   ++ +         +     +D     +A+    D  I L NP +  L++  
Sbjct: 376 LAVFRDAMAKLQESSEALIESERRLRRILDTSPLALAISRVSDSAILLVNPRWSELYRVP 435

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGT--LELLSDSVL 526
           + R    T    +A+  S   N     +L      +  F+   ++  G     +LS + +
Sbjct: 436 KARALGMT----VASCYSDPANRLRLVELVKKRGFVGGFECRMRASDGHEFWAMLSAAEI 491

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E    P      +++  ++T     E AL E  +   +A + K+ F+  +S+E+R+P+  
Sbjct: 492 EMDGEP----AVIVSSTDITRHKEEEAALAEAKKVAEEASQAKSLFLATMSHEIRTPMNG 547

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++    LL+      L ++Q +    I  S+T LL ++NDILD + ++A  ++L    + 
Sbjct: 548 VLTMAQLLEDM---PLPAEQREMARVIRDSATSLLTIINDILDFSKIEADKLQLELVELS 604

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++L+  V   +  +  E  I +    D  L    + D  RL QI + +  NA+ F+ KG
Sbjct: 605 LSELVEGVADLLTIRAQEKGISLITFIDPALTDMVIGDPIRLRQIITNLAGNAIKFTDKG 664

Query: 706 ST-VILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLS 759
              + ++A           F++ + G  +  +    +F  F+        +  G GLGLS
Sbjct: 665 YVRISVRALDPRERPLRLEFNITDTGIGLDSEQQARLFEPFMQADVTISRRYGGTGLGLS 724

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I    + +  G + + S+    +T   ++P +
Sbjct: 725 ICRRLVAMMDGEIGVRSNMGQGSTFWFQVPLE 756


>gi|317029553|ref|XP_001391885.2| histidine kinase J7 [Aspergillus niger CBS 513.88]
          Length = 1308

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 716 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 773

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 774 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 833

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G   +     D          F FSV + G  I
Sbjct: 834 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTICKSDREQCAADEYAFEFSVSDTGIGI 893

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 894 EEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 952


>gi|158340438|ref|YP_001521794.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158310679|gb|ABW32293.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 914

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 11/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A++ K+ F+ ++S+ELR+PL  I+G+  +L+ S   +++ K  Q V  I
Sbjct: 438 ELKVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLERSP--TISDKAQQQVHII 495

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
               T LL ++NDILDL+ ++AG + L    + L   L  V ++   +  +  +      
Sbjct: 496 HKCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAV 555

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNN 726
           D  L      D QRL Q+   +LSNA+ F+ +G TV L+         D     F V + 
Sbjct: 556 DPGLPEGVELDEQRLRQVLFNLLSNAIKFTQQG-TVTLQVSVAEVTRSDYRRLRFGVTDT 614

Query: 727 GSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  I       +FN FV     + Q  G GLGL+I    + L G  + + S+    +  +
Sbjct: 615 GVGIAPAHLDQLFNAFVQVGDRQKQAEGTGLGLAISRRLVQLMGSQIEVQSAVGQGSQFS 674

Query: 786 CRI 788
             +
Sbjct: 675 FEL 677


>gi|49482272|ref|YP_039496.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282907066|ref|ZP_06314914.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282910045|ref|ZP_06317853.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912293|ref|ZP_06320089.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|283959503|ref|ZP_06376944.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295429316|ref|ZP_06821938.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297589182|ref|ZP_06947823.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           MN8]
 gi|81652064|sp|Q6GKS6|WALK_STAAR RecName: Full=Sensor protein kinase walK
 gi|49240401|emb|CAG39047.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282323989|gb|EFB54305.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326111|gb|EFB56416.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329965|gb|EFB59486.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283789095|gb|EFC27922.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295127075|gb|EFG56719.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297577693|gb|EFH96406.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312436840|gb|ADQ75911.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195245|gb|EFU25633.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00]
          Length = 608

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 155/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 286 RIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 343

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 344 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++      +M   +         K      D  ++ Q+F  +++
Sbjct: 443 SDQINKEIIDFNMFINKIIN--RHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 37.6 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +           D +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGM--------AKEDII 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++   +  +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|330828385|ref|YP_004391337.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328803521|gb|AEB48720.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 905

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  LLKT    SL   Q+ Y++ 
Sbjct: 276 ELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKT----SLTPSQTDYMQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG ++L +    L D LNE    +    H+  + + + 
Sbjct: 332 IEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLR 391

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D  +  ++  D  RL Q+ + +  NA+ F+ +G+  V ++              +++ G
Sbjct: 392 VDADVPDYLTGDPMRLQQVLTNLTGNAIKFTEQGNVDVHIEQTGSGNHKVRLNVQIRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ++    +F  F         +  G GLGL I +  +   GG +   S     +  +
Sbjct: 452 IGISQEQQHQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSIFS 511

Query: 786 CRI 788
             +
Sbjct: 512 FSL 514


>gi|320104460|ref|YP_004180051.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751742|gb|ADV63502.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 976

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 118/256 (46%), Gaps = 13/256 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           ++ R   +    +    +A+  K+SF+  +S+E+R+PLT I+G+T++L   +       +
Sbjct: 512 ETCRTWISQRIASLRADEANRSKSSFLASMSHEIRTPLTLILGYTEMLMDQE---TEPWK 568

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ +  +  +   LL L+NDILDL+ ++AG ++  +  +   DLL +V      +     
Sbjct: 569 TEALRVVRHNGEYLLALLNDILDLSKIEAGKLETRFEPVDPFDLLRDVVDPFQPRARAKG 628

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDF 719
           +R+++     L    V D  R+ Q+   ++ NA+ F+ +GS  ++ +A            
Sbjct: 629 LRLELTCATPLPRRVVTDPVRVRQVLVNLIGNALKFTDQGSVRVVASAEWEPTTGSARWI 688

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +V + G  +  +    +F  F         +  G GLGL+I      + GG++++ S 
Sbjct: 689 EIAVHDTGIGMTPEQMSRLFRPFEQVDPSLTRRHEGTGLGLAISRRLARMLGGNITVESV 748

Query: 778 DEGVTTINCRI-PSKE 792
               +    R  P  E
Sbjct: 749 AGQGSVFRFRFTPEPE 764


>gi|262166423|ref|ZP_06034160.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM223]
 gi|262026139|gb|EEY44807.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM223]
          Length = 785

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQLELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  +     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDG-----RKSFFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L S V  D  RL Q+   ++SNAM F+ +G  V  + A  D   
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQH 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            D    V++ G  IPE+  + +F  +             G G+GL++    I L GG +S
Sbjct: 432 ADITIEVEDTGIGIPEEEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS----- 267
           +    N + ++ T   G    + +G +   ++++EI + ++ +     N    ++     
Sbjct: 176 EFSGCNRAMEELT---GKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKSFFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|239907937|ref|YP_002954678.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797803|dbj|BAH76792.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 735

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 154/379 (40%), Gaps = 27/379 (7%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                    + + H+ +G   + P       +  +  L   E         I   +  C+
Sbjct: 203 LQESEAYFAQALPHIDDGAWSWNPVTDEIFLSRQWLRLLGYEP------GDIPTTSEDCN 256

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVLEYSIIPLPNAQTMLT--- 541
              +  D   +   +      ER S      LL    S   L     P+ +    LT   
Sbjct: 257 ALLHPDDRDRVLGLLAACVRGERTSFSMEYRLLAKDGSYRWLHGRGAPVRDTAGRLTLLT 316

Query: 542 --FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T     E AL +  +A   A   K++F+  +S+E+R+P+  I+G  +LL  +  
Sbjct: 317 GATTDITRRKETELALAQARDAAMAASRAKSAFLASMSHEIRTPMNVILGMAELLAET-- 374

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            S++S Q +Y+E I+ S  +L  L++DILD + ++A  + L         L  EV     
Sbjct: 375 -SISSSQRRYLEGIAGSGRMLSQLLSDILDFSQIEADRVALFPEVFDPAALAREVCGLAG 433

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
                  + ++V +D  L    VAD  R+ Q+   ++ NA+ ++  G  + + A      
Sbjct: 434 EAAAGKGLDLQVHTDPSLPDRLVADPLRVRQVLLNLVWNAVKYTQSG-RITVSATPLSDP 492

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
              G  +FSV+++G  I  +    +F+ F         ++ G GLGLSI  +   L GG 
Sbjct: 493 AGQGFVLFSVRDSGPGIAPEAMARIFDPFSQADAAAHRRQGGAGLGLSISRALARLMGGD 552

Query: 772 VSISSSDEGVTTINCRIPS 790
           V   S+    +  +  +P+
Sbjct: 553 VVAESAPGAGSCFSFTLPA 571


>gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 890

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  E    A   K+ F+ ++S+E+R+P+  I+G   L   ++   L+ +Q+ YV  
Sbjct: 144 QELEQAYELAESATRAKSDFLANMSHEIRTPMNAILGMAHLALQTR---LDPQQADYVGK 200

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG + L      L+ +L  +   +  K     I +   
Sbjct: 201 IQRSAQHLLGIINDILDFSKIEAGKLDLEQIEFDLDHVLENLATLVGEKAEAKGIELLFE 260

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727
            D +L +    D  RL QI     +NA+ F+ +G  ++    L+          SV++ G
Sbjct: 261 VDHQLDTLLYGDPLRLGQILINYANNAVKFTEQGEILVKVTCLEKLPKEVLLHCSVQDTG 320

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + ++  + +F  F        R   G GLGL+I      L GG V + S     +T  
Sbjct: 321 IGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAISRELAALMGGEVGVQSEPGKGSTFW 380

Query: 786 CR 787
             
Sbjct: 381 FT 382


>gi|33466074|gb|AAQ19476.1| histidine kinase J7 [Emericella nidulans]
          Length = 1297

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 714 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 771

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 772 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 831

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G   +     D          F FSV + G  I
Sbjct: 832 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTICKSDREQCAANEYAFEFSVSDTGIGI 891

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 892 EEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 950


>gi|170736601|ref|YP_001777861.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169818789|gb|ACA93371.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1002

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 159/374 (42%), Gaps = 23/374 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
             +      +    ++    G+A+    DG + L N   R+         S    +  +A
Sbjct: 384 TRRVVESENLNRTIVEAAPSGIALLSLADGAVLLQNDTMRAYDARIAAAPSLAARL--LA 441

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
              +     +   DL   + T  D+   ++   + L+     +  ++       +  F +
Sbjct: 442 RFDASPGASAWQSDLHVTLPTGGDE---TVDLLVNLVRTRYRDADVV-------LCNFSD 491

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T     ER L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+    L     
Sbjct: 492 ITSQKNIERKLDEALRAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGREPLADT-- 549

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + ++ +  +S++LLNL++DILDL+ ++AG M +      L + + +           
Sbjct: 550 -QRERLQTVEGASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPLATA 608

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----F 719
             ++  VI D  L S +V D  R+ QI + ++ NA+ F+ +G   +    RD+ D     
Sbjct: 609 KGLQYDVIVDDALASRYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDADPASPV 668

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V + G  + +    ++F  F         +  G GLGL++ +    +  G + + S+
Sbjct: 669 VIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDVKSA 728

Query: 778 DEGVTTINCRIPSK 791
               +T    +P +
Sbjct: 729 PGEGSTFVVTLPLR 742


>gi|317470855|ref|ZP_07930236.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901682|gb|EFV23615.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 1062

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 119/248 (47%), Gaps = 11/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +AL    EA +KA+E K+SF+  +S+++R+P+  I+G T +  +        K  + 
Sbjct: 659 RNRKALLAAYEAAKKANEAKSSFLAQMSHDIRTPMNAIMGMTSIAASRINDP--EKVREC 716

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  SS+ LL+L+N+ILD++ ++ G ++L      L +L+ ++      +  +    +
Sbjct: 717 LTKIDMSSSHLLDLINEILDMSKIEKGKIELTEEPFCLRELITDINSITRPEALQKGQEL 776

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFS 722
                D     F+ D  R+ Q+   +++NA+ ++  G  +I++     G       F+F+
Sbjct: 777 LFRTVDVVHTDFIGDAGRIRQVLINLITNAVKYTQNGGRIIVEVQEVTGRTPGAASFVFT 836

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++NG  +  D    +F  F         + +G GLG+SI +  ++   G++   S    
Sbjct: 837 VEDNGIGMDPDFLNYIFVPFSRADDSKVRRVQGTGLGMSIAQGIVSAMNGNIQAESRKGQ 896

Query: 781 VTTINCRI 788
            +     +
Sbjct: 897 GSRFIVTL 904


>gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UM146]
          Length = 949

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILHN--------LTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 IEQTIRMENFFLPGMLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 950

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 130/257 (50%), Gaps = 7/257 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +
Sbjct: 441 ICVLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE 500

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S     V  ++ SS++LL +++DILD + +++  +K+        +++  +  + 
Sbjct: 501 ---LPSGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNY 557

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + + +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL A    G
Sbjct: 558 LSLVVKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVAQG 616

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  IP      +F+ F    +  +   +G GLGL+I E  IN+  G + + 
Sbjct: 617 YLAFRVRDTGVGIPAKELPRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVD 676

Query: 776 SSDEGVTTINCRIPSKE 792
           S     +    RIP  +
Sbjct: 677 SEPGMGSQFIVRIPIYQ 693


>gi|301100834|ref|XP_002899506.1| hybrid signal transduction histidine kinase, putative [Phytophthora
            infestans T30-4]
 gi|262103814|gb|EEY61866.1| hybrid signal transduction histidine kinase, putative [Phytophthora
            infestans T30-4]
          Length = 4070

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/678 (16%), Positives = 254/678 (37%), Gaps = 75/678 (11%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +       ++++      + L D
Sbjct: 2818 FEFPLITKAGRRVEIL-----LNATPRYNEHGEVMGMVGIGQDITERIAQEQEYTR-LID 2871

Query: 201  SLDFLVWHRDQAGDILWAN--ISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSA 257
            + +  ++  D  G +   N   ++      E ++ +  + E   + +K  ++  +  +  
Sbjct: 2872 TANAPIFGVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISEEYKVPVRSVLEKAFE 2931

Query: 258  LEKNFCETVSTLEHGNNKSYKIVRVLNSF-------GEAGIAIDVSKEITVNDQLTHTYE 310
              +        +     +   ++     +       G  GI  D+++ I    + +   +
Sbjct: 2932 GVETANFEFPLITKAGRRVEILLNATPRYNEHGEVKGMVGIGQDITERIAQEQEYSRLID 2991

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
              +     +   D N  +   NR   ++    +  +        + E L      PE   
Sbjct: 2992 TANAPIFGV---DANMCVNIWNRKAAQITNYSIGEV--------MGENLVETFISPE--F 3038

Query: 371  WKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVTSNPR-------GGTIWMFENLTV 421
                 E +       ET    + L    G  + +++ + PR        G + + +++T 
Sbjct: 3039 RPIVAEVLSQALTGVETANFEFPLITRPGTRIEILLNATPRYDLNGNIVGVVGIGQDITD 3098

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            ++  E +Y  L       ID  +  +     +GRI   N     +    ++ +   + + 
Sbjct: 3099 RIAQEHEYFRL-------IDTANAPIFGIDNNGRINEWNQKIEEITGYHKSNVLGLSLVH 3151

Query: 482  N-IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   C +   +     L    +   +    + +G   LL           L NA    
Sbjct: 3152 TFVTPDCRQQVRQLLNQALIGIDVGEMELPMTTKRGVFLLL-----------LVNA---S 3197

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            +  ++  ++R    + +   A +  +  K +F+   S+ELR+PL  ++G  +LLK     
Sbjct: 3198 SKKDMHGNIRGVIGVGQDYTARKHMEAAKVNFLASFSHELRTPLNGVLGMLELLKEQ--- 3254

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
             L+    +YV     S ++LLNL+NDILDL+ ++AG ++++ +   ++DLL+   +    
Sbjct: 3255 PLDKSIERYVHMAYVSGSLLLNLINDILDLSKIEAGHLEISTAPFQMHDLLDYSIEIFKF 3314

Query: 661  KMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--- 716
            K  E  +++++   D    + + D  RL Q+   +LSNA+ F+++GS + +  +  +   
Sbjct: 3315 KAKERGLKLELKCGDNVPKAVIGDVVRLRQVLLNLLSNAIKFTNEGS-ITVACSVVHSPE 3373

Query: 717  -----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                    +F V + G  +  +    +F+ F       Q    G GLGL+I +    L  
Sbjct: 3374 LPPQFKKLLFQVIDTGIGMDAEEKMRLFSLFTKLERTRQNNPTGSGLGLAICKQLAELMD 3433

Query: 770  GHVSISSSDEGVTTINCR 787
            G + + S     +     
Sbjct: 3434 GSIDVDSELGVGSNFFFT 3451



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/462 (11%), Positives = 143/462 (30%), Gaps = 61/462 (13%)

Query: 70   SKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSK 129
             +   LL             +E  E++G +    DI +       +   +   +      
Sbjct: 1191 RRVEILLNATPRY-------NERGEVMGMVGIGQDITERIAQEEEYSRLIDTANAPIFGV 1243

Query: 130  ATEKLRKEG---QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
                   EG    +F+    T+    ++I        A  R      +   +        
Sbjct: 1244 DINGRAFEGVETANFEFPLITRAGRRVEIL-----LNATPRYNERGEVMGMVGIGQDITD 1298

Query: 187  KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR----- 241
            +++      + + D+ +  ++  D  G +   N   +K  +      +  +G++      
Sbjct: 1299 RIAQEQEHSR-MIDTANAPIFGVDTDGRVNIWN---RKAADIMQYTNEDVLGKNLVEQFI 1354

Query: 242  -KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAGIAI 293
             + ++  ++  +  +    +        +     +       + +        G  GI  
Sbjct: 1355 SEEYRVAVRSVLEKAFEGVETANFEFPLITRAGRRVEILLNATPRYNERGEVMGMVGIGQ 1414

Query: 294  DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
            D+++ I    + +    ++      I   D N  +   NR    + +     +      D
Sbjct: 1415 DITERIAQEQEYSR---LIDTANAPIFGVDINGRVNIWNRKAAHIMQYTNEDVLDK---D 1468

Query: 354  ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-- 409
             + EF+    K+P        +  +   ++  ET    + L    G+ + +++ + PR  
Sbjct: 1469 LVAEFISEEYKVPV-------RSVLEKAFEGVETANFEFPLITKAGRRVEILLNATPRYN 1521

Query: 410  -----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                  G + + +++T ++  E +Y  L       ID  +  +     +G + + N    
Sbjct: 1522 EHGEVMGMVGIGQDITERIAQEQEYTRL-------IDTANAPIFGVDINGHVNIWNRKAA 1574

Query: 465  SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
             + +     +     +    +   +    S     F  I T+
Sbjct: 1575 HIMQYTNEDVLGKDLVAEFISNEYKVPVRSVLEKAFEGIETA 1616



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/448 (12%), Positives = 152/448 (33%), Gaps = 51/448 (11%)

Query: 78   ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKE 137
            + +    +W    +  +I+   ++ +         +S E  +       L KA E +  E
Sbjct: 1321 DTDGRVNIW--NRKAADIMQYTNEDVLGKNLVEQFISEEYRVAVRSV--LEKAFEGV--E 1374

Query: 138  GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKV 197
              +F+    T+    ++I        A  R      +   +       ++++      + 
Sbjct: 1375 TANFEFPLITRAGRRVEIL-----LNATPRYNERGEVMGMVGIGQDITERIAQEQEYSR- 1428

Query: 198  LFDSLDFLVWHRDQAGDILWAN--ISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMIS 254
            L D+ +  ++  D  G +   N   ++      E ++ +  + E   + +K  ++  +  
Sbjct: 1429 LIDTANAPIFGVDINGRVNIWNRKAAHIMQYTNEDVLDKDLVAEFISEEYKVPVRSVLEK 1488

Query: 255  SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-------GEAGIAIDVSKEITVNDQLTH 307
            +    +        +     +   ++     +       G  GI  D+++ I    + T 
Sbjct: 1489 AFEGVETANFEFPLITKAGRRVEILLNATPRYNEHGEVMGMVGIGQDITERIAQEQEYTR 1548

Query: 308  TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +  +     +   D N ++   NR    + +     +      D + EF+ +  K+P 
Sbjct: 1549 LIDTANAPIFGV---DINGHVNIWNRKAAHIMQYTNEDVLGK---DLVAEFISNEYKVPV 1602

Query: 368  QLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWMFEN 418
                   +  +   ++  ET    + L    G+ + +++ + PR        G + + ++
Sbjct: 1603 -------RSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQD 1655

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            +T ++  E +Y+ L       ID  +  +     +GR+ + N     + +     +    
Sbjct: 1656 ITERIAQEEEYSRL-------IDTANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKD 1708

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITS 506
             +    +   +    S     F  + T+
Sbjct: 1709 LVAEFISKEYKVPVRSVLEKAFEGVETA 1736



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 112/349 (32%), Gaps = 47/349 (13%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +        +++      + L D
Sbjct: 701  FEFPLITKAGRRVEIL-----LNATPRYNEHGAVIGMVGIGQDITDRIAQEQEYMR-LID 754

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR------KLFKEEIKKRMIS 254
            + +  ++  D  G +   N   +K  ET      + +G+        + +K  ++  +  
Sbjct: 755  TANAPIFGVDINGRVNIWN---RKAAETTQYTNAEVLGKDLVAEFISEEYKVPVRSVLEK 811

Query: 255  SSALEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
            +    +        +     +       + +        G  GI  D++  +    +   
Sbjct: 812  AFQDVETANFEFPLITKAGRRVEILLNATPRYNEQGQVMGMVGIGQDITVRMAQEKEKNR 871

Query: 308  TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               ++H+    I   DQ+  +   N    E+ +     +      D +  F+   ++   
Sbjct: 872  ---MIHSANAPIFGVDQDGLVNIWNLKVAEITQFSSEEVMGQ---DLVNRFVAEDHRDEV 925

Query: 368  QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLT 420
              N +   E      K +           G+ + +++ + PR        G   + +++T
Sbjct: 926  NFNLRKALEG-----KPTGNFDFPLITKTGRRVEILLNATPRYDELGQIFGVTGIGQDIT 980

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
             ++  E +Y  L       ID  +  +     +GR+ + N    S+ + 
Sbjct: 981  ERIAQEQEYIRL-------IDTANAPIFGVNSEGRVNIWNKKAASIMQY 1022



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/388 (12%), Positives = 121/388 (31%), Gaps = 51/388 (13%)

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           F+    T++   ++I        A  R      +   +        +++      + L  
Sbjct: 461 FEFPLITKDGRRVEIL-----LNATPRYNEKGVVIGVVGIGQDITVRMAQEKETNR-LIH 514

Query: 201 SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR------KLFKEEIKKRMIS 254
           S +  ++  DQ G +   N    K  E      Q+ +G+        +  +E +   +  
Sbjct: 515 SANAPIFGVDQDGRVNIWN---LKVAEITQFSSQEIMGKDLVNRFVAEDHRESVGLLLRK 571

Query: 255 SSALEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +   E+        +     +       + +   +   FG  GI  D+++ I    +   
Sbjct: 572 ALQGEQTGNFDFPIITKTGRRVEILLNATPRYDELGQIFGVMGIGQDITERIAQEQE--- 628

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              ++      I   D    +   N+   E+ +          ++  + E L       +
Sbjct: 629 YIRLIDTANAPIFGVDSEGRVNIWNKKAAEIMQYT--------TDAVMGEKLVEKYITKD 680

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWMFEN 418
             +    +  +       ET    + L    G+ + +++ + PR        G + + ++
Sbjct: 681 YQD--AVRNVLSEALNGVETANFEFPLITKAGRRVEILLNATPRYNEHGAVIGMVGIGQD 738

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T ++  E +Y  L       ID  +  +     +GR+ + N       +     +    
Sbjct: 739 ITDRIAQEQEYMRL-------IDTANAPIFGVDINGRVNIWNRKAAETTQYTNAEVLGKD 791

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITS 506
            +    +   +    S     F  + T+
Sbjct: 792 LVAEFISEEYKVPVRSVLEKAFQDVETA 819



 Score = 70.7 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 116/376 (30%), Gaps = 70/376 (18%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +       ++++      + L D
Sbjct: 1181 FEFPLITKAGRRVEIL-----LNATPRYNERGEVMGMVGIGQDITERIAQEEEYSR-LID 1234

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
            + +  ++  D  G                         E  +    E      +   +E 
Sbjct: 1235 TANAPIFGVDINGR----------------------AFEGVETANFEFPLITRAGRRVEI 1272

Query: 261  NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA 320
                T    E G              G  GI  D++  I    + +    ++      I 
Sbjct: 1273 LLNATPRYNERGEV-----------MGMVGIGQDITDRIAQEQEHSR---MIDTANAPIF 1318

Query: 321  IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
              D +  +   NR   ++ +          +N+++L        + E+  ++    ++  
Sbjct: 1319 GVDTDGRVNIWNRKAADIMQY---------TNEDVLGKNLVEQFISEE--YRVAVRSVLE 1367

Query: 381  -VYKSSETHKDTWHLPN--GQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYN 430
              ++  ET    + L    G+ + +++ + PR        G + + +++T ++  E +Y+
Sbjct: 1368 KAFEGVETANFEFPLITRAGRRVEILLNATPRYNERGEVMGMVGIGQDITERIAQEQEYS 1427

Query: 431  TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             L       ID  +  +     +GR+ + N     + +     +     +    +   + 
Sbjct: 1428 RL-------IDTANAPIFGVDINGRVNIWNRKAAHIMQYTNEDVLDKDLVAEFISEEYKV 1480

Query: 491  YNESDGWDLFAAIITS 506
               S     F  + T+
Sbjct: 1481 PVRSVLEKAFEGVETA 1496



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/385 (11%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +       ++++      + L D
Sbjct: 2098 FEFPLITKAGRRVEIL-----LNATPRYNERGEVMGMVGIGQDITERIAQEQEYSR-LID 2151

Query: 201  SLDFLVWHRDQAGDILWAN--ISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSA 257
            + +  ++  D  G +   N   ++      E ++ +  + E     +K  ++  +  +  
Sbjct: 2152 TANAPIFGVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISNEYKVPVRSVLEKAFE 2211

Query: 258  LEKNFCETVSTLEHGNNKSYKIVRVLNSF-------GEAGIAIDVSKEITVNDQLTHTYE 310
              +        +     +   ++     +       G  GI  D+++ I    + +   +
Sbjct: 2212 GVETANFEFPLITKAGRRVEILLNATPRYNEHGEVKGMVGIGQDITERIAQEQEYSRLID 2271

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
              +     +   D N ++   NR   ++ +     +      D + EF+    K+P    
Sbjct: 2272 TANAPIFGV---DINGHVNIWNRKAADIMQYTNEDVLGK---DLVAEFISKEYKVPV--- 2322

Query: 371  WKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWMFENLTV 421
                +  +   ++  ET    + L    G+ + +++ + PR        G + + +++T 
Sbjct: 2323 ----RSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQDITE 2378

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            ++  E +Y+ L       ID  +  +     +G + + N     + +     +     + 
Sbjct: 2379 RIAQEEEYSRL-------IDTANAPIFGVDINGCVNIWNRKAADIMQYTNEDVLGKDLVA 2431

Query: 482  NIAATCSRYYNESDGWDLFAAIITS 506
               +   +    S     F  + T+
Sbjct: 2432 EFISKEYKEPVRSVLEKAFEGVETA 2456



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 126/385 (32%), Gaps = 45/385 (11%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +       ++++      + L D
Sbjct: 1978 FEFPLITKAGRRVEIL-----LNATPRYNEHGEVMGMVGIGQDITERIAQEQEYTR-LID 2031

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGE-SRKLFKEEIKKRMISSSA 257
            + +  ++  D  G +   N       +   E ++ +  + E     +K  ++  +  +  
Sbjct: 2032 TANAPIFGVDINGHVNIWNRKAADIMQYSNEDVLGKDLVVEFISNEYKVPVRSVLEKAFE 2091

Query: 258  LEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
              +        +     +       + +        G  GI  D+++ I    + +   +
Sbjct: 2092 GIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQDITERIAQEQEYSRLID 2151

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
              +     +   D N ++   NR    + +     +      D + EF+ +  K+P    
Sbjct: 2152 TANAPIFGV---DINGHVNIWNRKAAHIMQYTNEDVLGK---DLVAEFISNEYKVPV--- 2202

Query: 371  WKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWMFENLTV 421
                +  +   ++  ET    + L    G+ + +++ + PR        G + + +++T 
Sbjct: 2203 ----RSVLEKAFEGVETANFEFPLITKAGRRVEILLNATPRYNEHGEVKGMVGIGQDITE 2258

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            ++  E +Y+ L       ID  +  +     +G + + N     + +     +     + 
Sbjct: 2259 RIAQEQEYSRL-------IDTANAPIFGVDINGHVNIWNRKAADIMQYTNEDVLGKDLVA 2311

Query: 482  NIAATCSRYYNESDGWDLFAAIITS 506
               +   +    S     F  I T+
Sbjct: 2312 EFISKEYKVPVRSVLEKAFEGIETA 2336



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/386 (11%), Positives = 123/386 (31%), Gaps = 47/386 (12%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +        +++      + +  
Sbjct: 821  FEFPLITKAGRRVEIL-----LNATPRYNEQGQVMGMVGIGQDITVRMAQEKEKNR-MIH 874

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGE-SRKLFKEEIKKRMISSSA 257
            S +  ++  DQ G +   N+   + T+  +E ++ Q  +     +  ++E+   +  +  
Sbjct: 875  SANAPIFGVDQDGLVNIWNLKVAEITQFSSEEVMGQDLVNRFVAEDHRDEVNFNLRKALE 934

Query: 258  LEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
             +         +     +       + +   +   FG  GI  D+++ I    +      
Sbjct: 935  GKPTGNFDFPLITKTGRRVEILLNATPRYDELGQIFGVTGIGQDITERIAQEQE---YIR 991

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            ++      I   +    +   N+    + +     +      ++ +             +
Sbjct: 992  LIDTANAPIFGVNSEGRVNIWNKKAASIMQYTTDAVMGEKLVEKYI-----------TKD 1040

Query: 371  WKTWKENIF-SVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWMFENLT 420
            ++    N+        ET    + L    G+ + +++ + PR        G + + +++T
Sbjct: 1041 YQEAVSNVLSEALNGVETANFEFPLITKAGRRVEILLNATPRYNEHGAVIGMVGIGQDIT 1100

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             ++  E +Y  L       ID  +  +     +GR+ + N     + +     +     +
Sbjct: 1101 DRIAQEQEYTRL-------IDTANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKDLV 1153

Query: 481  RNIAATCSRYYNESDGWDLFAAIITS 506
                +   +    S     F  I T+
Sbjct: 1154 AEFISEEYKVPVRSVLEKAFEGIETA 1179



 Score = 64.6 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/386 (12%), Positives = 121/386 (31%), Gaps = 47/386 (12%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +       ++++      + L D
Sbjct: 1618 FEFPLITKAGRRVEIL-----LNATPRYNERGEVMGMVGIGQDITERIAQEEEYSR-LID 1671

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGE-SRKLFKEEIKKRMISSSA 257
            + +  ++  D  G +   N       +   E ++ +  + E   K +K  ++  +  +  
Sbjct: 1672 TANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKDLVAEFISKEYKVPVRSVLEKAFE 1731

Query: 258  LEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
              +        +     +       + +        G  GI  D++  I    + T    
Sbjct: 1732 GVETANFEFPLITRAGRRVEILLNATPRYNERGEVMGMVGIGQDITDRIAQEQEYTR--- 1788

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            ++ +    I   D N  +   N+   E+ +           ND + E L          +
Sbjct: 1789 LIDSANAPIFGVDVNGCVNIWNKKAAEITQYTP--------NDVMGENLVEKFITE---D 1837

Query: 371  WKTWKENIFS-VYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWMFENLT 420
            ++     + S      ET    + L    G+ + +++ +  R        G + + +++T
Sbjct: 1838 YRKAVGLVLSKALDGVETANFEFPLMTKAGRRVEILLNATSRFNEHGEVIGMVGIGQDIT 1897

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             ++  E +Y  L       ID  +  +     +GR+ + N       +     +     +
Sbjct: 1898 ERIAQEQEYTRL-------IDTANAPIFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLV 1950

Query: 481  RNIAATCSRYYNESDGWDLFAAIITS 506
                +   +    S     F  + T+
Sbjct: 1951 AEFISKEYKVPVRSVLEKAFEGVETA 1976



 Score = 64.6 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 54/389 (13%), Positives = 124/389 (31%), Gaps = 53/389 (13%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +       ++++      + L D
Sbjct: 2458 FEFPLITKAGRRVEIL-----LNATPRYNERGDVMGMVGIGQDITERIAQEQEYSR-LID 2511

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE------SRKLFKEEIKKRMIS 254
            + +  ++  D    I   N   +K  +      ++ +GE        + FK      M  
Sbjct: 2512 TANAPIFGVDTNMRINIFN---RKAQQITNFSSEELVGEMYVETIISQEFKAVTYDIMCK 2568

Query: 255  SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-------GEAGIAIDVSKEITVNDQLTH 307
            +    +     ++       K   ++     F       G  GI  D++  I    + T 
Sbjct: 2569 ALQGNETASFELALTTKTGRKVNILLNATARFDQHGQIVGVVGIGQDITDRIAQEQEYTR 2628

Query: 308  TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               ++ +    I   D N  +   N+   E+ +           ND + E L        
Sbjct: 2629 ---LIDSANAPIFGVDVNGCVNIWNKKAAEITQYTP--------NDVMGENLVEKFITE- 2676

Query: 368  QLNWKTWKENIFSVY-KSSETHKDTWHL--PNGQTLHVIVTSNPR-------GGTIWMFE 417
              +++     +FS   + +ET    + L    G+ + +++ +  R        G + + +
Sbjct: 2677 --DYREAVGLVFSKACEGTETANFEFPLMTKAGRRVEILLNATSRFNEIGEVMGVVGIGQ 2734

Query: 418  NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
            ++T ++  E +Y  L       ID  +  +     +GR+ + N       +     +   
Sbjct: 2735 DITERIAQEQEYTRL-------IDTANAPIFGVDINGRVNIWNRKAAETTQYTNAEVLGK 2787

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITS 506
              +    +   +    S     F  I T+
Sbjct: 2788 DLVAEFISNEYKMPVRSVLEKAFEGIETA 2816



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 116/371 (31%), Gaps = 50/371 (13%)

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
            G  F+L   T     ++I       C   R  +L  +   +A      ++ +  +  +K
Sbjct: 98  AGADFELPLVTARGSRVEIV-----LCLTPRFDTLGSVMGVVAIGQDVTERNTKEME-YK 151

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            L ++ +  ++  D  G ++  N    + +E         +     L  E+ +  + +  
Sbjct: 152 KLIETANAPIFGVDTEGRVVIFNAKAAQISEYAPDEVM-GVDLVDTLISEDFRSEVAAVF 210

Query: 257 ALEKNFCETVS---TLEHGNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQL 305
                  ET +    L     +  +++              G  GI  D++  I    + 
Sbjct: 211 QRAFQGIETANFEFPLVTKTGRKVELLLNATPRYDHTGQLVGVVGIGQDITDRIIQEKEY 270

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           +   +  +     +   D N  +   N+    + +             ++ +F+      
Sbjct: 271 SRLIDTANAPIFGV---DCNCEVIIWNKKAAAITDYTNEDTIGQ----KIFKFISE---- 319

Query: 366 PEQLNWKTWKENIFS---VYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWM 415
               +++     + S     + +          +G+ L +++ + P+        G + +
Sbjct: 320 ----DYRDVVGKVLSKAMEGEGTANFDFPLITKSGRRLDILLNATPKYDHFGNICGAVGI 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +++T +   E +Y  L       ID  +  +     +G + + N       +     + 
Sbjct: 376 GQDITDRRAQEQEYTRL-------IDTANAPIFGVDENGCVNIWNRKAADTTQYSNEEVL 428

Query: 476 PGTHIRNIAAT 486
               + N    
Sbjct: 429 GVNLVENFIPD 439



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 127/371 (34%), Gaps = 72/371 (19%)

Query: 132 EKLRKEGQS-FDLVAETQNDCAIKIE----------GRVSGSCAFLRILSLDGIYSELAE 180
           + +  EG + FD    T++   + I           G + G+          GI  ++ +
Sbjct: 331 KAMEGEGTANFDFPLITKSGRRLDILLNATPKYDHFGNICGAV---------GIGQDITD 381

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              + ++       +  L D+ +  ++  D+ G +   N   +K  +T     ++ +G +
Sbjct: 382 RRAQEQE-------YTRLIDTANAPIFGVDENGCVNIWN---RKAADTTQYSNEEVLGVN 431

Query: 241 ------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIVRVLNSFG 287
                    F+E +   +  +   ++        +     +       + +        G
Sbjct: 432 LVENFIPDDFQEAVWTVLSEALKGQETANFEFPLITKDGRRVEILLNATPRYNEKGVVIG 491

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             GI  D++  +    +      ++H+    I   DQ+  +   N    E+ +     + 
Sbjct: 492 VVGIGQDITVRMAQEKETNR---LIHSANAPIFGVDQDGRVNIWNLKVAEITQFSSQEIM 548

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVT 405
                D +  F+   ++       ++    +    +  +T    + +    G+ + +++ 
Sbjct: 549 GK---DLVNRFVAEDHR-------ESVGLLLRKALQGEQTGNFDFPIITKTGRRVEILLN 598

Query: 406 SNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           + PR        G + + +++T ++  E +Y  L       ID  +  +     +GR+ +
Sbjct: 599 ATPRYDELGQIFGVMGIGQDITERIAQEQEYIRL-------IDTANAPIFGVDSEGRVNI 651

Query: 459 SNPAFRSLWKT 469
            N     + + 
Sbjct: 652 WNKKAAEIMQY 662



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/425 (11%), Positives = 123/425 (28%), Gaps = 78/425 (18%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F+    T+    ++I        A  R      +   +        +++      + L D
Sbjct: 1061 FEFPLITKAGRRVEIL-----LNATPRYNEHGAVIGMVGIGQDITDRIAQEQEYTR-LID 1114

Query: 201  SLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGE-SRKLFKEEIKKRMISSSA 257
            + +  ++  D  G +   N       +   E ++ +  + E   + +K  ++  +  +  
Sbjct: 1115 TANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKDLVAEFISEEYKVPVRSVLEKAFE 1174

Query: 258  LEKNFCETVSTLEHGNNK-------SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
              +        +     +       + +        G  GI  D+++ I   ++ +   +
Sbjct: 1175 GIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQDITERIAQEEEYSRLID 1234

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
              +     +   D N                  AF     +N E     R+  ++   LN
Sbjct: 1235 TANAPIFGV---DINGR----------------AFEGVETANFEFPLITRAGRRVEILLN 1275

Query: 371  WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
                                  +   G+ +          G + + +++T ++  E +++
Sbjct: 1276 ------------------ATPRYNERGEVM----------GMVGIGQDITDRIAQEQEHS 1307

Query: 431  TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                     ID  +  +     DGR+ + N     + +     +     +    +   R 
Sbjct: 1308 R-------MIDTANAPIFGVDTDGRVNIWNRKAADIMQYTNEDVLGKNLVEQFISEEYRV 1360

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQTMLTFVNVTDS 548
               S     F  + T+      + +  L   +   +E   +  P  N +  +  +     
Sbjct: 1361 AVRSVLEKAFEGVETA------NFEFPLITRAGRRVEILLNATPRYNERGEVMGMVGIGQ 1414

Query: 549  VRAER 553
               ER
Sbjct: 1415 DITER 1419



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 108/338 (31%), Gaps = 42/338 (12%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE--GIVFQKAIGESRKLFKEEI 248
               +  +    +  +   D+ G+I   N   +  T      ++ +  +    + F++ +
Sbjct: 27  QEKQYATVMMQANAPIIELDKEGNITVWNSKTESMTGYASVDMLGEPLLPVVDESFRKIV 86

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GEAGIAIDVSKEIT 300
            +++  + +        +  +    ++  +IV  L           G   I  DV++  T
Sbjct: 87  SEKIEQALSGIAGADFELPLVTARGSRV-EIVLCLTPRFDTLGSVMGVVAIGQDVTERNT 145

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
              +     E  +     +   D    +   N    ++ E     +      D L+    
Sbjct: 146 KEMEYKKLIETANAPIFGV---DTEGRVVIFNAKAAQISEYAPDEVMGVDLVDTLI---- 198

Query: 361 SANKLPEQLNWKTWKENIF-SVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-------G 410
                    ++++    +F   ++  ET    + L    G+ + +++ + PR        
Sbjct: 199 -------SEDFRSEVAAVFQRAFQGIETANFEFPLVTKTGRKVELLLNATPRYDHTGQLV 251

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G + + +++T ++  E +Y+ L       ID  +  +     +  + + N    ++    
Sbjct: 252 GVVGIGQDITDRIIQEKEYSRL-------IDTANAPIFGVDCNCEVIIWNKKAAAITDYT 304

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                     + I+        +     +      +FD
Sbjct: 305 NEDTIGQKIFKFISEDYRDVVGKVLSKAMEGEGTANFD 342


>gi|228907208|ref|ZP_04071069.1| hypothetical protein bthur0013_13780 [Bacillus thuringiensis IBL
           200]
 gi|228852429|gb|EEM97222.1| hypothetical protein bthur0013_13780 [Bacillus thuringiensis IBL
           200]
          Length = 591

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 163/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ELTVDFRNPIEEYAFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              T  +  +P++
Sbjct: 577 GEGTIFSVYLPNR 589


>gi|224539076|ref|ZP_03679615.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519321|gb|EEF88426.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           ++   +G  V   D  +    P +R       + L  G           +  + +  W  
Sbjct: 95  LEKGEQGTVVVDVDEHLSHVLPEYRKRIYEAIDGLEKGCSKLIDEEFLYQNADNTLSWRN 154

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              II  +D+  K                  I +   Q +       +  + E  L +  
Sbjct: 155 IYGIIYEYDEGGKP----------------AILIGGTQIID------ERKKLESDLRKAK 192

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +   +A+ +K +F+ ++S+E+R+PL  I+GF+ +L  ++     +++ ++   I+ ++ +
Sbjct: 193 DKAEEANRLKTAFLANMSHEIRTPLNAIVGFSSILADTEDI---AEKKEFCNLINHNNAL 249

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL +V+DILD++ ++AG + L+ +   L+DL+ E       K     + I++   G+   
Sbjct: 250 LLKIVDDILDISKIEAGYIDLHPTWFCLSDLIMESATEYRMKAAGR-LDIRIHKPGQGYM 308

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D +R+ QI +  LSNA+  + +G  + +            V + G  IP+D    +F
Sbjct: 309 AELDTKRVKQILNNFLSNALKHTQEG-YIDITYGVTEQGIEIKVTDTGCGIPQDKLPVIF 367

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF       Q  GVGLGL I +S     GG + ++S     TT+   +P
Sbjct: 368 ERFEKVDSFTQ--GVGLGLPICKSIAECMGGSIGLTSEAGVGTTVWVTLP 415


>gi|168186495|ref|ZP_02621130.1| sensory transduction histidine kinase [Clostridium botulinum C str.
            Eklund]
 gi|169295498|gb|EDS77631.1| sensory transduction histidine kinase [Clostridium botulinum C str.
            Eklund]
          Length = 1668

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 122/231 (52%), Gaps = 5/231 (2%)

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIG---FTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            K +E++  F  ++S+ELR+PL  I       +LL  ++      K  +Y++ +  +   L
Sbjct: 1404 KYEEMRTEFFANISHELRTPLNVIFSGYQMLNLLLGNENLDNKEKVDKYMDTMKQNCYRL 1463

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            + L+N+++D+  +D+G  +LN   + +  ++  +  S+A  +    I +   +  +    
Sbjct: 1464 VRLINNLIDITKIDSGFFELNMINVNIVSIVETITLSVAQYIESKGINLIFDTFVEEKVM 1523

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
              D  ++ +I   +LSNA+ F++KG  + +    ++ + I SVK++G  IP++    +F+
Sbjct: 1524 ACDVDKIERIILNLLSNAVKFTNKGGNIFVTMYEEDDNIIISVKDDGIGIPQEKQAIIFD 1583

Query: 741  RFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF+         R G G+GL++V+S + LHGG++S+ S     +    ++P
Sbjct: 1584 RFIQVDKSLSRNREGSGIGLALVKSIVELHGGNISLKSKLREGSEFIIKLP 1634


>gi|46580817|ref|YP_011625.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450237|gb|AAS96885.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 1035

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 116/753 (15%), Positives = 237/753 (31%), Gaps = 110/753 (14%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS--- 189
           +L  +G+S ++   T +        +V    A      +  +   +A    + + L    
Sbjct: 9   RLPSQGESLNMPGMTYDQRTESTGPQVKDEAAGS--AEVQALRERIARLEDENRLLRLCA 66

Query: 190 -----NHISVFKVLFDSLDFLV--------WHRD-QAGDILWANISYKKNTET-EGIVFQ 234
                        L   +            +  D Q  ++L+ N S        +G    
Sbjct: 67  RFEGPAPGEALGSLLPEIIAPASDAPLVYAYVSDMQTHELLFVNRSLTMAVGAWQGRKCY 126

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA----- 289
           + +             R+  +      +      L     + ++ +     + +      
Sbjct: 127 ELLQGRDTPCPFCTSGRLQRNPERPVVWEWRNPRL----GRWFRCIDRCIHWPDGRPVRY 182

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLAT 348
            +A+D++      + L      L     AI + D +       N     +   D   L  
Sbjct: 183 ELAVDITDMREAQEDLLRFRAALDASAEAIFLVDLEEGRFLDVNSGACTMLGYDRDTLLG 242

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
                          +   Q+        +    ++   H+D   +P      ++     
Sbjct: 243 LGLCGIRRSMAADGCR---QILDSIAAGAVLENVETVYLHRDGTFVPVEVGARLVDRVGG 299

Query: 409 RGGTIWMFENLTV----QVDLETKY----------NTLVKVQGE------TIDHLSEGVA 448
               I +  +++     +  +E +Y            L+            +  L +G  
Sbjct: 300 PRLAIMVARDVSEKRKARRAMEVRYLYEHVLSSCARELLSRSCSESTLVGVLGALRQGAG 359

Query: 449 VF---------GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGW 497
                        +GR+   +  + S        L        I A+ +    +    G 
Sbjct: 360 ACRAYIFENYEDAEGRL-CCSQRYESSAPGVRPELDNPALQNIIYASEAPNWLHELRKGR 418

Query: 498 DLFAAIITSFDDERKSLQG-------TLELLSDSVLEYSIIPLPNAQTMLTFVNVT---- 546
            +   +      ER  LQ         L + +  V     +   + +T  T+        
Sbjct: 419 AVVGPVADQPLPERDVLQAQGIRSLLVLPIFARGVW-CGFVGFDDTRTERTWQGGDILFL 477

Query: 547 -----------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                      +  RAE  L   ++   +A   K+ F+ ++S+E+R+PL  IIG T+L  
Sbjct: 478 QTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANMSHEIRTPLNAIIGLTEL-- 535

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    ++    + +  +  S+  LL +VND+LDL+ V++G + L       + L   V 
Sbjct: 536 -TLQEPISQGVGENLRGVLHSAEALLAVVNDLLDLSRVESGRLHLESVEFSPSRLARGVV 594

Query: 656 QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILK 711
           + +        +  ++ I+     +   D  RL Q+   ++ NA+ F+ +G    TV   
Sbjct: 595 RLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNLVGNALKFTDEGGVSLTVTPC 654

Query: 712 AARDNGD-------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
               +                 F+V + G  IP D    +F  FV       RR  G GL
Sbjct: 655 ICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESFVQADESTARRFGGTGL 714

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I    + + GG + + S     +   C +P
Sbjct: 715 GLAISRRLVEMMGGRLELRSEPGKGSEFWCDVP 747



 Score = 41.1 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 84/299 (28%), Gaps = 58/299 (19%)

Query: 53  KKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP---EIIGQLHQRIDIPQTD 109
           K      + +  + +++++       +    +    + E P   E +G L   I  P +D
Sbjct: 36  KDEAAGSAEVQALRERIARLE-----DENRLLRLCARFEGPAPGEALGSLLPEIIAPASD 90

Query: 110 TDL---------------------LSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148
             L                     ++   W     Y  L       R     F      Q
Sbjct: 91  APLVYAYVSDMQTHELLFVNRSLTMAVGAWQGRKCYELLQG-----RDTPCPFCTSGRLQ 145

Query: 149 ND--CAIKIEGRVSGSCAFLR-----ILSLDG--IYSELAETTLKCKKLSNHISVFKVLF 199
            +    +  E R      + R     I   DG  +  ELA      ++    +  F+   
Sbjct: 146 RNPERPVVWEWRNPRLGRWFRCIDRCIHWPDGRPVRYELAVDITDMREAQEDLLRFRAAL 205

Query: 200 DSLDFLVWHRD-QAGDILWANISYKKNTETE----------GIVFQKAIGESRKLFKEEI 248
           D+    ++  D + G  L  N         +          GI    A    R++     
Sbjct: 206 DASAEAIFLVDLEEGRFLDVNSGACTMLGYDRDTLLGLGLCGIRRSMAADGCRQILDSIA 265

Query: 249 KKRMISSSALEKNFCE-TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
              ++ +        + T   +E G      + RV        +A DVS++      + 
Sbjct: 266 AGAVLENVETVYLHRDGTFVPVEVGARL---VDRVGGPRLAIMVARDVSEKRKARRAME 321


>gi|229126416|ref|ZP_04255431.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4]
 gi|228656996|gb|EEL12819.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4]
          Length = 883

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 465 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 705 SNVGEGSTFTVYIP 718


>gi|18309968|ref|NP_561902.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|18144646|dbj|BAB80692.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 623

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/513 (18%), Positives = 204/513 (39%), Gaps = 43/513 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           EI +  +       L +LT  +   D +      N++F     I+  ++      D   +
Sbjct: 103 EINLKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKVGIEKKYIIGKTDKDIFFD 162

Query: 358 FLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRG 410
                   P ++    KT +E I S  K     +  +   +G     + +      N   
Sbjct: 163 -------DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVK 215

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I +  +++ +  +E +     K+  E  ++L + V +     +    N AF  L+   
Sbjct: 216 GIIGLTRDISYKKAIEYRLKKNDKMFFEVFNYLDD-VVIIKEGEKTIYVNHAFEKLYGLN 274

Query: 471 ----ENRLSPGTHIRNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDS 524
                   S    +  I       ++  D  D F   A I   D+E +++          
Sbjct: 275 CKELYKEKSMIVKLDRIHPEDRYKFSNIDFEDFFMEKARIVRADNEVRNV---------- 324

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +   + I   N +++   + + D       +T+  E   + ++++  F  ++S+E ++P+
Sbjct: 325 LFRANSIKNENGESIRRIIVIND-------ITDTIEKSNEMEKLRMEFFANISHEFKTPV 377

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLN 641
             I     LL+     +++  +  Y+ YI     +   LL L+N+++D   ++AG   +N
Sbjct: 378 NLIYSALQLLELKLKNNIDRDEESYINYIKMAKQNVFRLLKLINNLIDSTKLEAGFFNVN 437

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +   + ++  SI     +N I I   ++ +      D   L +I   ILSNA+ F
Sbjct: 438 IKNHDIVSCVEDITMSICGFAEKNKISITFDTEEEEKIIAFDLNHLERILLNILSNAIKF 497

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           + +   + +  + D      S+K+ G  I +D    +F+RF    +R  +   G G+GL 
Sbjct: 498 NRENGNIDVYMSFDERYANISIKDTGIGIQKDKIDLLFDRFKKINNRLTKVNEGSGIGLF 557

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +  + ++GG + ++S     T    ++P K+
Sbjct: 558 IAKELVKINGGEMIVNSELGEGTEFIIKLPIKK 590



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 101/282 (35%), Gaps = 42/282 (14%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L     +  +  DSL   V+ +D  G  +  N +++      GI  +  IG++ K    +
Sbjct: 106 LKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKV---GIEKKYIIGKTDKDIFFD 162

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------------GEAGIAI 293
              ++ +    ++    +     +G    ++                      G  G+  
Sbjct: 163 DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVKGIIGLTR 222

Query: 294 DVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+S +  +  +L       +E+ + L   + I  +     + N +F +L+ ++   L   
Sbjct: 223 DISYKKAIEYRLKKNDKMFFEVFNYLDD-VVIIKEGEKTIYVNHAFEKLYGLNCKELYKE 281

Query: 350 PSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLP------NGQTLHV 402
            S    L+ +   ++     ++++ +      + ++    ++           NG+++  
Sbjct: 282 KSMIVKLDRIHPEDRYKFSNIDFEDFFMEKARIVRADNEVRNVLFRANSIKNENGESIR- 340

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                     I +  ++T  ++   K N + K++ E   ++S
Sbjct: 341 ---------RIIVINDITDTIE---KSNEMEKLRMEFFANIS 370


>gi|312958187|ref|ZP_07772710.1| alginate biosynthesis sensor protein [Pseudomonas fluorescens WH6]
 gi|311287618|gb|EFQ66176.1| alginate biosynthesis sensor protein [Pseudomonas fluorescens WH6]
          Length = 595

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    GR++  NP  +     +E RL  G               
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEERLGQG---------LGEALV 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++   + ER      +E+  +  +L YS+ P+ + Q  +    +      
Sbjct: 308 RPELDEQLQLVLRGGNLERAPDDLEVEVEGELRLLTYSLTPVSHTQGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     L +        S+++  ++
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLFRERAKFPAESREADLLD 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +   +G+ KL      + DLL   +          NI + V
Sbjct: 419 TVNEEMQRLMQLINDLLNFSRYQSGLQKLTLGPCDVPDLLEHAQARFVEPAKAQNIELLV 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            +   L    AD+ +L ++   +L NA+  ++ G  + L+A R     I SV++NG  I 
Sbjct: 479 EAQDDLPRLYADQAQLERVLDNLLGNALRHTADGGQIRLQARRHGERVIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595



 Score = 37.6 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 30/164 (18%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           ++ ++   FG    A+   +   +++ L        +L ++   + + D+   L+  N  
Sbjct: 227 EMNQLTRRFGIMAEALRQHQATNIDELLAGQQRLQAVLDSIDDGLLMIDRQGRLEHLNPV 286

Query: 335 FVELWEIDLAFLAT-------NPSNDELLEF-LRSANKLPEQLNWKTWKENIFSVYKSSE 386
                  D   L          P  DE L+  LR  N      + +   E    +     
Sbjct: 287 AQRQLGWDEERLGQGLGEALVRPELDEQLQLVLRGGNLERAPDDLEVEVEGELRLL---- 342

Query: 387 THKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLET 427
                       T  +   S+ +G   G + +  ++T Q   E 
Sbjct: 343 ------------TYSLTPVSHTQGHILGAVMVLHDVTEQRAFER 374


>gi|116695030|ref|YP_840606.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113529529|emb|CAJ95876.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a NtrB-like sensor domain [Ralstonia
           eutropha H16]
          Length = 608

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 149/376 (39%), Gaps = 18/376 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                + +Q   +D + + V +     R+   N ++  L     + L  G  +       
Sbjct: 36  ALKDNIAIQSALLDGIPQPVYLRDASLRLITCNRSYEELVGATRDTLR-GQPLDTSVQVH 94

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-----F 542
               + ++    +  +I       K     L   +  VL + + PL  A   +       
Sbjct: 95  PIAIDMAEVERDYRKVIKDGIPLHKDRCLRLGGRTHHVLNW-LTPLRGADGTVKGLAGGC 153

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T+       L +       A+  K++F+  VS+E+R+P+  I G  +L  T     L
Sbjct: 154 VDLTERHDMLAELAQAKTEAEAANRAKSTFLASVSHEIRTPMNAITGMLEL--TLARCQL 211

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++   +     S+  LL L++DILDL+ ++AG   ++ +   L  L+ +         
Sbjct: 212 AEQERLQLVTAHKSAVGLLALIDDILDLSKMEAGKFSIHPAPASLPGLVKDTLLIFGPVA 271

Query: 663 HENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDN- 716
            +  + +   I          D  R  QI + ++SNA+ F+  G T+ ++    A RD  
Sbjct: 272 AQKGLPLTSGIGVAVAPLHQVDALRFRQILANLVSNAVRFTDSG-TIHVRLDALAPRDGV 330

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSI 774
              + +V + G  IP      +F  F     R +    G GLGL+I +   +  GG +S+
Sbjct: 331 QQVMLTVSDTGIGIPAGEQARMFEPFEQVHDRTRPHAGGTGLGLAICQRLASAMGGQISL 390

Query: 775 SSSDEGVTTINCRIPS 790
           SS     T +   +P 
Sbjct: 391 SSQPGQGTRVMVTLPL 406



 Score = 45.7 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 53/138 (38%), Gaps = 22/138 (15%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
            L ++I++   L D +   V+ RD +  ++  N SY++                + L   
Sbjct: 36  ALKDNIAIQSALLDGIPQPVYLRDASLRLITCNRSYEELVGATRDTL-----RGQPLDTS 90

Query: 247 -EIKKRMISSSALEKNFCETVS--TLEHGNN------KSYKIVRVLNSF--------GEA 289
            ++    I  + +E+++ + +      H +       +++ ++  L           G A
Sbjct: 91  VQVHPIAIDMAEVERDYRKVIKDGIPLHKDRCLRLGGRTHHVLNWLTPLRGADGTVKGLA 150

Query: 290 GIAIDVSKEITVNDQLTH 307
           G  +D+++   +  +L  
Sbjct: 151 GGCVDLTERHDMLAELAQ 168



 Score = 43.4 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 7/144 (4%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + D +     +L  +   + + D +  L   NRS+ EL       L   P +  +    
Sbjct: 36  ALKDNIAIQSALLDGIPQPVYLRDASLRLITCNRSYEELVGATRDTLRGQPLDTSVQVHP 95

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
            + +    + +++   ++          HKD      G+T HV+    P  G     + L
Sbjct: 96  IAIDMAEVERDYRKVIKD------GIPLHKDRCLRLGGRTHHVLNWLTPLRGADGTVKGL 149

Query: 420 TVQ-VDLETKYNTLVKVQGETIDH 442
               VDL  +++ L ++     + 
Sbjct: 150 AGGCVDLTERHDMLAELAQAKTEA 173


>gi|117923614|ref|YP_864231.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607370|gb|ABK42825.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 899

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 12/252 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +  R L        +A+  K+ F+  +S+E+R+P+  I+G  DLLK +    L+ +Q++
Sbjct: 375 HKNNRQLALAKREAEEANAAKSRFLATMSHEIRTPMNAIVGMADLLKDT---PLDREQAR 431

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +V     +   L++L+NDILDL+ V +G + +      +  LL+++   +  K     + 
Sbjct: 432 FVATFQRAGDQLMDLLNDILDLSKVQSGQIHIEVVETDIRTLLDDLSAMMVAKARVKQVD 491

Query: 669 IKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FS 722
           +       L + V  D  RL Q+   +L NA+ F++ G  V L+A   +   +     F 
Sbjct: 492 LLFNPHPNLPARVGVDPLRLRQVMINLLGNAIKFTANGE-VELRAYFTSSSEVPYGLGFE 550

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G  I E   K++F  F         Q  G GLGL+I    + L GG + + S+   
Sbjct: 551 ISDTGIGIDETRLKAIFEAFTQADLSVTRQFGGTGLGLTISRHLVALMGGDIQVESTIGQ 610

Query: 781 VTTINCRIPSKE 792
            +     IP  E
Sbjct: 611 GSRFWFEIPIDE 622


>gi|258623855|ref|ZP_05718809.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM603]
 gi|258583844|gb|EEW08639.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM603]
          Length = 785

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQLELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  +     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDG-----RKSFFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L S V  D  RL Q+   ++SNAM F+ +G  V  + A  D   
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAECDEQH 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            D    V++ G  IPE+  + +F  +             G G+GL++    I L GG +S
Sbjct: 432 ADITIEVEDTGIGIPEEEQEKIFAMYYQVKPGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS----- 267
           +    N + ++ T   G    + +G +   ++++EI + ++ +     N    ++     
Sbjct: 176 EFSGCNRAMEELT---GKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKSFFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|224538854|ref|ZP_03679393.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519529|gb|EEF88634.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 329

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 140/293 (47%), Gaps = 17/293 (5%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--MLTFVNVTDSVRAERALTEKNEA 561
           + S+D +R   Q    + S      +  P  + Q   ++T V++    + E  L    + 
Sbjct: 48  VYSWDYQRPFDQCWFRVFS------AAFPWIDGQMAHVITSVDIDHQKKIEEELIIAKDK 101

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
               D +K++F+ ++S+E+R+PL +I+GF  +L   +      ++  Y+E +  ++ +LL
Sbjct: 102 AENLDRLKSAFLANMSHEIRTPLNSIVGFASMLVEEE---DKEERQGYIEIMQENTELLL 158

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++DILDL+ ++AG +  N   + + D   ++ +    K  +  + + + S        
Sbjct: 159 QLISDILDLSKIEAGTLDFNMGYLNIRDFCEDILRGYEIK-EDKPVPVVLASGLPDYRIY 217

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVF 739
            D++RL+Q+ +  ++NA+ F+SKG  + L+     G  +  FSV + G  I  D    VF
Sbjct: 218 TDKKRLMQVITNFINNALKFTSKG-QITLEYHFKEGTNEIEFSVTDTGIGIAPDAVGQVF 276

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +RFV        +G GLGLSI  S +   GG +   S     +      P  E
Sbjct: 277 DRFVKLNTFS--KGTGLGLSICRSIVEHLGGTIGAESEVGVGSRFWFTHPCAE 327


>gi|255016168|ref|ZP_05288294.1| putative signal transduction histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 798

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    +    A+  K+ F+  +S+E+R+P+  I+G + +   +       K    +E + 
Sbjct: 398 IQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI--DNTDKIKDCLEKVI 455

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL L+ND+LD++ +++G ++L + +      L +++     +     I  + I  
Sbjct: 456 MSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDLENLYGEQAKSKGISYETILA 515

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
             L    + D  RL Q+ S +LSNA+ F+     + L+ ++   D       F V + G 
Sbjct: 516 SDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGC 575

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F  F         +  G GLGLSIV+ F  L GG + ++S     +T   
Sbjct: 576 GIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTV 635

Query: 787 RIP 789
            +P
Sbjct: 636 DLP 638


>gi|239995384|ref|ZP_04715908.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           ATCC 27126]
          Length = 707

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 157/388 (40%), Gaps = 15/388 (3%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGET--IDHLSEGVA-VFGPDGRIK-LSNPAFRSLWKTE 470
           + ++   Q  L        +   +   +D+L   ++  +  +G++    N   +S  +  
Sbjct: 61  ICDDSEEQRYLAQSLARFKQNHQQLVSLDNLPSSISNTYFNEGQLDNKVNRYIKSADQIL 120

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           +      T + +I A  S           F    T+  D   S++  L L + ++L    
Sbjct: 121 DAAQCQPTTLLDIQALTSLLQQLDYVVARFEQDATARVDVVLSIEVYLWLATLALLCIEA 180

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             + +        +       +       +  R+A + K+ F+  +S+ELR+P+  + G 
Sbjct: 181 AFIFSPMERTVKRSFAKLTSLKEQAESSADEARRASKAKSEFLSSMSHELRTPMNGLFGM 240

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +L   +       K + Y++    +   LL L+NDILD++ ++AG +K+  + + L  +
Sbjct: 241 IELAIDN-----PDKSNIYLKKAKTAGRQLLVLINDILDISKIEAGKIKIEQAPVDLLQV 295

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-- 707
           L++V            +    + D  L   +  D  R+ QI   +LSNA+ F+ +GS   
Sbjct: 296 LDDVVSLQRVYCQRKGLEFHYLKDPDLPHVIKGDITRISQILHNLLSNAIKFTEQGSVTL 355

Query: 708 -VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            V      +     F V + G  I      ++F +F        R   G GLGLSI +  
Sbjct: 356 KVTYTKRPNGNYLSFDVIDTGIGIESSKLDNIFKKFEQADQSTTREYGGTGLGLSIAKQL 415

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
             L  G ++++S     +T +  + ++E
Sbjct: 416 AKLMLGDINVTSFVGQGSTFSFTMAAEE 443


>gi|238898708|ref|YP_002924389.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466467|gb|ACQ68241.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 874

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    + +++   +K+ F+ ++S+ELR+PL ++IGF    + +   SL   Q+ Y++ +
Sbjct: 221 ELEMTKKKVQEDSHMKSEFLANISHELRTPLNSVIGFA---RQTLKTSLTPTQTDYIKTM 277

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++A  + L++    L   ++EV   +A   HE  + + +  
Sbjct: 278 KQSAHNLLSIINDVLDFSKLNAKKLILDHIPFQLRKNVDEVMILLAHSAHEKGLELILKI 337

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGS 728
              +    + D  R  QI + +L NA+ F+ KG  ++    +     +   +  +++ G 
Sbjct: 338 HHDVPDWVMGDPMRFQQIITNLLGNAIKFTEKGHIIVQVALIAKKEASIHLLVEIQDTGK 397

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +    +F  F+       R   G GLGL+I    +    G ++  S     +T   
Sbjct: 398 GIAPEQQAELFQAFIQTDASISRCHGGTGLGLAITRKLVQAMQGEINFDSQVNQGSTFRF 457

Query: 787 RI 788
            I
Sbjct: 458 NI 459


>gi|225851110|ref|YP_002731344.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1]
 gi|225645199|gb|ACO03385.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1]
          Length = 339

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/361 (20%), Positives = 147/361 (40%), Gaps = 36/361 (9%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAATCSRYYN 492
           +V  + +D L EGV V   +  I+  N   + + K +   + P G H   +      Y  
Sbjct: 9   EVILKFLDFLKEGVIVVDENQNIEYMNAYAKDILKNDIKGIDPLGKHFSEVIKNNYLYS- 67

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                      I S+ ++R   +     ++D +    +  + N + +         +   
Sbjct: 68  -----------IISYKNKRDFKEEI--TINDDIFLIRMYHINNKKVLHFQDITLFEI--- 111

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
                         + K  FV +VS+EL++P+  + G  + L+  +         +++  
Sbjct: 112 ------------YKQAKKDFVSNVSHELKTPIAVMKGIVETLEQEEDVQT---IRKFLNM 156

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
                  + +L+ND+L LA +++   KLN +   L+ ++N +   +     E NI++   
Sbjct: 157 AKKRIDQMDSLINDLLILAKLESKEEKLNITKADLSRIVNSIFNDLEHLSKEKNIKLIND 216

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                     D+++   +   ++ NA+ ++    +V + A R +G+ + +V + G  IP+
Sbjct: 217 IPEGF-LIDVDQKKFDILLKNLIENAIKYNKPEGSVTVSAERKDGEILINVTDTGIGIPK 275

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F RF        R   G GLGLSIV+     H G V + S     +T   RIP 
Sbjct: 276 ESQPLIFERFYRVDKSRSRNVGGTGLGLSIVKHIAEAHNGKVEVKSEPNVGSTFTVRIPE 335

Query: 791 K 791
           +
Sbjct: 336 R 336


>gi|158339630|ref|YP_001521019.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158309871|gb|ABW31487.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 914

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 11/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A++ K+ F+ ++S+ELR+PL  I+G+  +L+ S   +++ K  Q V  I
Sbjct: 438 ELKVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLERSP--TISDKAQQQVHII 495

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
               T LL ++NDILDL+ ++AG + L    + L   L  V ++   +  +  +      
Sbjct: 496 HKCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGLEFVYAV 555

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNN 726
           D  L      D QRL Q+   +LSNA+ F+ +G TV L+         D     F V + 
Sbjct: 556 DPGLPEGVELDEQRLRQVLFNLLSNAIKFTQQG-TVTLQVSVAEVTRSDYRRLRFGVTDT 614

Query: 727 GSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  I       +FN FV     + Q  G GLGL+I    + L G  + + S+    +  +
Sbjct: 615 GVGIAPAHLDQLFNAFVQVGDRQKQAEGTGLGLAISRRLVQLMGSQIEVQSAVGQGSQFS 674

Query: 786 CRI 788
             +
Sbjct: 675 FEL 677


>gi|307546290|ref|YP_003898769.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
 gi|307218314|emb|CBV43584.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
          Length = 725

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 6/240 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L         A + K+ F+  VS+E+R+PL  +IG ++LL       L      Y + I
Sbjct: 215 ELEVTAHRAESASQAKSEFLATVSHEIRTPLNGVIGMSELLSEHH---LPDGARHYADTI 271

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL L+NDILD + ++AG + L   ++ L++L+N      A       I +    
Sbjct: 272 HDSAQRLLELINDILDFSKIEAGRLDLETRSLSLSELVNGALSLFAPHAEAKGIHLVAWI 331

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D  L    V+D  RL QI   +LSNA+ F+ +G   +     D+G+    V + G  I E
Sbjct: 332 DPALPTHIVSDPGRLRQILLNLLSNAIKFTERGEVRVSAFVADDGELGIDVVDTGCGIDE 391

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +F  F        RR  G GLGL+I +  +    G + + S     +    R+P 
Sbjct: 392 QRQAQLFEPFRQGDPSTARRFGGTGLGLAICKRLVEALRGRIGMESQPHLGSRCWVRLPL 451


>gi|296156227|ref|ZP_06839066.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. Ch1-1]
 gi|295893733|gb|EFG73512.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. Ch1-1]
          Length = 1344

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/488 (20%), Positives = 196/488 (40%), Gaps = 19/488 (3%)

Query: 308  TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               +L +  +A  + D++  ++    S   ++ + LA +   P  + L   L  A     
Sbjct: 727  VTNLLASTEIATLLLDRHAVIKRFTPSAARIFGLALADID-RPITNVLGNPLGDALL--- 782

Query: 368  QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
            +   +          K  +T    W++       + V   P  G +  + ++T     + 
Sbjct: 783  EDVQRVVSAQTGQAEKEIQTLTGEWYVRRITPY-IAVQGTPPAGVVVTWNDITHVKASDE 841

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            +   L  V  ++ D ++    VF   GR+   N A  +++   E      T    +    
Sbjct: 842  RSRRLAAVVQDSNDAMT----VFDLSGRLIAWNRAATAIYGYTEAEALCMTVSDMLPPGA 897

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM---LTFVN 544
             + + +   +      + S++ +R +  G +    D  +  SI+       +    T   
Sbjct: 898  RQDHLDFIRYAEHNEALHSYETQRVTKSGRVL---DIWITLSILSDDQGHAVAIATTERE 954

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +TD   +   L E+ E L +AD  KN F+  + +ELR+PL  +    DLL +  +     
Sbjct: 955  LTDRSLSNTQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSAGDLLASETVDV--R 1012

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +++  V  I      +  LVN++LDL  + +G +KLN   + L  ++    +     + E
Sbjct: 1013 QKAWAVGVIQRQGRAMTQLVNEMLDLTRITSGSIKLNRQAVTLETVVQSALEVCRPIVEE 1072

Query: 665  NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +  + V    +      D  RL Q+   I+ NA  ++  G  + L A ++       VK
Sbjct: 1073 RHHTLSVALPEEPVLMYVDPTRLSQVIENIVINAAKYTEPGGKIDLTATKNGRRLSLRVK 1132

Query: 725  NNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            +NG+ I   M  ++F+ FV     +     G+G+GLS+V   + LHGG V   S  +  +
Sbjct: 1133 DNGAGIAPSMLNTLFDMFVQGPLPYGQLHNGLGVGLSVVRRLVELHGGSVEAVSDGKTGS 1192

Query: 783  TINCRIPS 790
                 +P 
Sbjct: 1193 EFIVDLPL 1200



 Score = 38.8 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 79/209 (37%), Gaps = 23/209 (11%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE--AGIAI---DVSK 297
              + + + +    + +    E       G     +I   +   G   AG+ +   D++ 
Sbjct: 776 PLGDALLEDVQRVVSAQTGQAEKEIQTLTGEWYVRRITPYIAVQGTPPAGVVVTWNDITH 835

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
               +++      ++ +   A+ +FD +  L   NR+   ++    A       +D L  
Sbjct: 836 VKASDERSRRLAAVVQDSNDAMTVFDLSGRLIAWNRAATAIYGYTEAEALCMTVSDMLPP 895

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGGTI 413
             R  +     L++  + E+      S ET + T    +G+ L + +T    S+ +G  +
Sbjct: 896 GARQDH-----LDFIRYAEH-NEALHSYETQRVT---KSGRVLDIWITLSILSDDQGHAV 946

Query: 414 WMFENLTVQVDLETK--YNTLVKVQGETI 440
            +    T + +L  +   NT ++ + E +
Sbjct: 947 AIA---TTERELTDRSLSNTQLRERAERL 972


>gi|242786807|ref|XP_002480878.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218721025|gb|EED20444.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1309

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA  +A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 724 REAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHNLAN 781

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 782 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLNLAYQVDSSVP 841

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK------AARDNGDFIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G   + +        ARD   F FSV + G  I
Sbjct: 842 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSEREQCARDEYAFEFSVSDTGIGI 901

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 902 EEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 960


>gi|242783972|ref|XP_002480293.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218720440|gb|EED19859.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1900

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 120/670 (17%), Positives = 238/670 (35%), Gaps = 122/670 (18%)

Query: 154  KIEGRVSGSCAFLRILSLDGIYSE-LAETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQ 211
               GR + + A  R  S +   +  +A+   +   +S HI  F+++ +S+   ++  +  
Sbjct: 863  HDSGRPTPASAPTRSSSRNASTTSVIAQLQREGVSISEHI--FQLMLNSVPLHLFLAKAS 920

Query: 212  AGDILWANI---SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
            +G++LW N    +Y+++   E  +         +   E + K+   +      F E V  
Sbjct: 921  SGEVLWTNSKFDAYRRSHPQEQSIRDPWQNVHPEEV-ESLSKQWHKALQTGSQFTERVRV 979

Query: 269  LEHGNNKSYK---------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
                ++ +Y+         + +        G  +D+ ++     +     E         
Sbjct: 980  KRFNDDNAYRWFIFRANPLLSQTGQVVSWIGSFLDIHEQHVSELRAAQERETFAT----- 1034

Query: 320  AIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSNDELLEFLRSANKLPEQLNWK- 372
                        N  +  L         +   L    S +E    L +   + E +N+  
Sbjct: 1035 ------------NAKYRALANSIPQIVFEATELRGLISANEQW-HLYTGQSIEEAMNYGF 1081

Query: 373  TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
            T   +   + K      + +    G+T   + + +P  G + +F N              
Sbjct: 1082 TAYIHPDDLEKCGILSSEIFR---GRTSSDVASKHPDVGPLKLFAN-------------- 1124

Query: 433  VKVQGETIDHLSEGVA--VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              V    I+ +++G+       +GRI  +                               
Sbjct: 1125 -GVTPGLIELVNQGIVNSQQDENGRIFYT------------------------------- 1152

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                          T      K       L+    +E S      A    T  ++ D   
Sbjct: 1153 --------------TELRIRSKGGGYRWHLVRLVKVETSNFGDDEASWYGTCTDINDRKL 1198

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             ER L +  + L +  E K  F  ++S+E+R+PL  I+G    +  +   +L+ +Q + +
Sbjct: 1199 LERELNKAMQKLNREMESKTKFFSNMSHEIRTPLNGILGTIPFILDT---TLDHEQRRML 1255

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I  SST L  LV++ILD++ V+AG M +  S   L  +L +V  ++A +  +  + I 
Sbjct: 1256 DTIQNSSTNLRELVDNILDVSRVEAGKMNMVKSWFHLRSVLEDVIDTVAPRAIDKGLEIN 1315

Query: 671  VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--------FI 720
             + D  +    + DR R+ Q+   ++ NA+ F+  G         R+ G           
Sbjct: 1316 YLMDTDVPDMVIGDRFRIRQVLINLMGNAVKFTPHGEIYTRCSVYREPGVPLRDTELLLN 1375

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            F V + G        + +  RF         Q  G GLGL + +  + +HGG ++ SS +
Sbjct: 1376 FEVVDTGKGFSNTDAQRLMQRFSQLGGNGSQQNAGSGLGLFLSKQLVEMHGGKLTPSSRE 1435

Query: 779  EGVTTINCRI 788
                  +  I
Sbjct: 1436 GQGAKFSFYI 1445


>gi|145300355|ref|YP_001143196.1| hybrid sensory histidine kinase BarA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853127|gb|ABO91448.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 903

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 15/245 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  LLKT    +L   Q+ Y++ 
Sbjct: 276 ELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKT----ALTPSQTDYMQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG ++L +    L D LNE    +    H+  + + + 
Sbjct: 332 IEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQ 391

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKN 725
            D ++  ++  D  RL Q+ + +  NA+ F+ +G  V +   +  G           +++
Sbjct: 392 VDAEVPDYLTGDPMRLQQVLTNLAGNAIKFTERG-NVDVHIEQTGGSNGNKVRLNVLIRD 450

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E+  + +F  F         +  G GLGL I +  +   GG +   S     + 
Sbjct: 451 TGIGISEEQQRQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSI 510

Query: 784 INCRI 788
            +  +
Sbjct: 511 FSFSL 515


>gi|46202120|ref|ZP_00053728.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 512

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 148/368 (40%), Gaps = 31/368 (8%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           E ++   +G  VF  D  + L N  F  +     + + PGT   +     +    E    
Sbjct: 17  EAVEEFGQGFTVFDRDLNLILCNNRFLEMLNFPASLVHPGTVFADFMRFNA-LRGEYGPG 75

Query: 498 DLFAAIITSFDDERKSLQG--TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           D+   +    D  R         E    +V+E    PLP    + T+ ++T+  RAER L
Sbjct: 76  DVEELVAERVDRARGFAPHCFERERPDGTVIEVRGTPLPGGGFVTTYTDITERKRAERML 135

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               +   +   IK +F+  +S+E+R+P+  ++G   LL       L  +Q  ++E   +
Sbjct: 136 IHAKDKAEETARIKANFLATMSHEIRTPMNGVLGMLHLL---TGSPLTPEQRDHLETAQS 192

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  LL+++NDILD + ++AG MK+  +   L  L+ E+   +     +  + +++    
Sbjct: 193 SARSLLSIINDILDFSKLEAGQMKMESTRFDLYRLMEEMGALLKGAAMDKGLDLRLHIAA 252

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D  RL QI + ++ NA+ F+ +G   +L  A  +    F V ++G  I    
Sbjct: 253 NVPRHHCGDSNRLRQILTNLMGNAVKFTERGGVEVLVEALPDSRLRFQVADSGIGIDPAA 312

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESF-------------INLHGGHVSISSSDEGV 781
              +F+ FV               SI   F                  G +   S     
Sbjct: 313 ASGLFSEFVQADS-----------SITRRFGGTGLGLSXXXXXXXXXXGEIGFDSVPGQG 361

Query: 782 TTINCRIP 789
           TT +  +P
Sbjct: 362 TTFHVVLP 369



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 1/134 (0%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
            H  E +        +FD++  L   N  F+E+     + +       + + F     + 
Sbjct: 13  RHLIEAVEEFGQGFTVFDRDLNLILCNNRFLEMLNFPASLVHPGTVFADFMRFNALRGEY 72

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
               + +          +    H      P+G  + V  T  P GG +  + ++T +   
Sbjct: 73  G-PGDVEELVAERVDRARGFAPHCFERERPDGTVIEVRGTPLPGGGFVTTYTDITERKRA 131

Query: 426 ETKYNTLVKVQGET 439
           E           ET
Sbjct: 132 ERMLIHAKDKAEET 145


>gi|302874728|ref|YP_003843361.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307690658|ref|ZP_07633104.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302577585|gb|ADL51597.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 568

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 159/395 (40%), Gaps = 35/395 (8%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIK 457
            V + S    G +    N+     +E   N L + Q      ++ +  GV     + R+ 
Sbjct: 203 RVKIYSQDEVGDLGRVFNIMTSK-MEAAINKLTEEQNTLQAILESMESGVIAIDDEDRVI 261

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L+N     ++  + N L  G  I N+                   II + ++  K ++  
Sbjct: 262 LTNLYVEKIFGIKTNVL--GEKIINLVRDIE-----------IEKIIKANNNVPKEIE-- 306

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +       L      +     ++  V          A+ +    ++K + ++  F+ +VS
Sbjct: 307 IRHPQPRSLRIKTAYIRKGYEIIGRV----------AVVQDITDIKKLENLRYQFMANVS 356

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++PLT+I GF + L+       + K+ +++  I+  +  L +L+NDIL L+ ++   
Sbjct: 357 HELKTPLTSIKGFAETLR---YVKEDDKKEKFLNIINEEANRLTSLINDILTLSDIETHK 413

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            KL Y  I +N ++ +V   +     E  I++             ++ +  Q+   ++ N
Sbjct: 414 DKL-YEDIEVNAIIKDVFLLLKPIADEKEIQLTYDISDTTVIVSGEQNKFKQMLINLIDN 472

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
           A+ +S +   V ++        + +V++NG  I       +F RF          R G G
Sbjct: 473 AIKYSDRNGFVKVQCFLKEDYVVITVEDNGIGIENICLNRIFERFYRVDEARSRARGGTG 532

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL+IV+  I    G + + S     T    ++P 
Sbjct: 533 LGLAIVKHIILEFKGTIDVESEIGKGTKFIVKVPK 567


>gi|330980175|gb|EGH78357.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 837

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 190 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 246

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 247 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 306

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 307 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 366

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 367 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 426

Query: 787 RI 788
            +
Sbjct: 427 SL 428


>gi|242786803|ref|XP_002480877.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218721024|gb|EED20443.1| two-component osmosensing histidine kinase (Bos1), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1310

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA  +A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 724 REAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHNLAN 781

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 782 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLNLAYQVDSSVP 841

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK------AARDNGDFIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G   + +        ARD   F FSV + G  I
Sbjct: 842 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSEREQCARDEYAFEFSVSDTGIGI 901

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 902 EEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 960


>gi|242281150|ref|YP_002993279.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242124044|gb|ACS81740.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 596

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 157/361 (43%), Gaps = 24/361 (6%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               + + +GV V     RI   N A + ++   +N         ++  T        D 
Sbjct: 252 QAVFNGMWDGVMVLDGSCRILSVNRALQDIFPGIQN---------DLDRTPLEIIPSPDL 302

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           +D    ++     E  ++Q  + L +  V + +I+  P+                  A+ 
Sbjct: 303 YDACREVVGPEGPEATTVQ--IVLPNGRVYDVNIVRSPHTSEPGQGPGAI-------AVF 353

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                +++ + ++  FV +VS+ELR+PLT++ G+ + L +       S Q  ++  I  +
Sbjct: 354 HDISEIKRLETVRQDFVANVSHELRTPLTSVKGYAETLLSDP-PPPESIQKNFLATIEKN 412

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  +  +V+D+L+L+ +++G  K+    I   D L E  ++ +    +  + +K   +  
Sbjct: 413 ANHMCKIVDDLLNLSRLESGHEKVELMPIDPTDALREAWEACSGLAKKRKVDLKRSFEKG 472

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             + +AD  +L+Q+F  +L N + +  + + VI++     G   F+V ++G  IP     
Sbjct: 473 DFTVMADSGQLMQLFRNLLENGIKYGPEENPVIVEHRVREGRLQFAVIDSGPGIPAADQP 532

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG---VTTINCRIPSK 791
            +F RF S     R +    GLGL+I    ++ HGG +S+    EG    T     +P  
Sbjct: 533 RIFERFYSVEKFRRNEFGSTGLGLAISRHIVSNHGGEISVQCPPEGHRQGTAFVFSLPLM 592

Query: 792 E 792
           +
Sbjct: 593 Q 593



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 20/143 (13%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A       T+  Q      + + +   + + D +  +   NR+  +++      L   P 
Sbjct: 235 ARIDEHVSTITGQRNKIQAVFNGMWDGVMVLDGSCRILSVNRALQDIFPGIQNDLDRTPL 294

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--- 408
                        +P    +   +E +    +  E       LPNG+   V +  +P   
Sbjct: 295 E-----------IIPSPDLYDACREVVGP--EGPEATTVQIVLPNGRVYDVNIVRSPHTS 341

Query: 409 ---RG-GTIWMFENLTVQVDLET 427
              +G G I +F +++    LET
Sbjct: 342 EPGQGPGAIAVFHDISEIKRLET 364


>gi|149178901|ref|ZP_01857479.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797]
 gi|148842240|gb|EDL56625.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797]
          Length = 592

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 144/384 (37%), Gaps = 26/384 (6%)

Query: 410 GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F +++ ++     +           ++ + EGV        +  +N +   L  
Sbjct: 229 GILAQSFNHMSKEMAERVRQLQASGDRLSTVLEGMVEGVIAINERQHVLFANESAGRLLF 288

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                        ++                   ++ + + +R  ++  LE  SD +L  
Sbjct: 289 FSPEDAEGKALFESV--------RNHQLQKSVTEVLKTLEPQRMEVE--LESTSDRILGV 338

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +  PLP        + + D     R            + ++  FV +VS+EL++PL++I 
Sbjct: 339 TTTPLPGTPCPGLVIVLFDMTELRRL-----------ESLRQEFVANVSHELKTPLSSIK 387

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            +T+ L    +         ++  I   +  L  L+ D++ LA++++G    +   I L 
Sbjct: 388 AYTETLIRGAMDD-PEINKTFLLRIEEQADRLHQLILDLISLASIESGNQVFDIINIELR 446

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             +               I + +          AD + L QI   +++NA+ ++     +
Sbjct: 447 PFVESCLVDQQKVAESKQIELLIEESEPGIKVKADEEGLHQILGNLINNAIKYTPDQGRI 506

Query: 709 ILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
            ++  R+ G+  +  V++ G  I E     +F RF        R   G GLGLSIV+  +
Sbjct: 507 TIRWQREEGNMVLLQVQDTGIGIAEKYQARLFERFFRVDKARSRELGGTGLGLSIVKHLV 566

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
               G + ++S     +T + R+P
Sbjct: 567 QSFNGTIGVTSKVGEGSTFSVRLP 590


>gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71]
          Length = 949

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPCVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|309792210|ref|ZP_07686682.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225751|gb|EFO79507.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 921

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +              AL  +N+A   A   K++F+ ++S+E+R+PL  +IG   LL+ S
Sbjct: 401 GLEMIKAFIQQWEMANALRARNDAAEAATRAKSAFLANMSHEIRTPLNAVIGMAALLQES 460

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+ +Q  +V+ I      LL +++DILD + +++G ++L  +   L+  L      
Sbjct: 461 R---LDQEQRIFVDTIRTGGEALLAVISDILDFSRIESGQLELELAAFDLHHYLKTTVDL 517

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAA 713
           +A   +  N+ +       +   V  D  RL QI   +L NA+ F+S+G     V L   
Sbjct: 518 VAHSAYTKNLAMTCHIAPDVPQIVQGDAARLRQILLNLLGNAVKFTSQGEVALEVTLHDQ 577

Query: 714 --RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
              D  +  F V++ G  +  +  + VF  FV       RR  G GLGL+I +  ++L G
Sbjct: 578 PNPDGVEITFQVRDTGIGMSAEQLERVFAPFVQADSSTARRYGGTGLGLAISQQLVHLMG 637

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +S +SS    +  +  +P
Sbjct: 638 GTISATSSLGHGSIFSLNLP 657


>gi|283850552|ref|ZP_06367840.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283574123|gb|EFC22095.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 866

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 140/777 (18%), Positives = 263/777 (33%), Gaps = 88/777 (11%)

Query: 65  ICDQLSKYHSLLTENNCLTIVWDGKD-----ETPEIIGQLHQRIDIPQTDTDLL---SFE 116
           I  +L      +T+   L   W   +     E PE++ QL         ++  L    F 
Sbjct: 121 IQGRLDHSEPFVTDYGSL---WVNSNTALIAERPELLDQLRGNCIGSGYESSALIPIRFG 177

Query: 117 NWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYS 176
                H  ++L      L        L    ++      + +          L L G   
Sbjct: 178 A--TTHGLLQLEDRRRGLFTRQLIAGLELVARHLALALSQRQAVEE------LRLAGADL 229

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E    + + K L+     F+++ +++  L W     G I W N  +    E  G   ++ 
Sbjct: 230 E-RRVSERTKALAESEVKFRIMANAIPQLAWIAQADGHIFWYNDRWY---EYTGTTPEQM 285

Query: 237 IGESRKLFKEEIK-----KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
            G   +   +        ++  +S A  K F                + R+      AG 
Sbjct: 286 EGWGWQRVHDPATLPDVVEQWKASIATGKPFDMVFPLRGADGRFRPFLTRINPLLDSAGR 345

Query: 292 AI-------DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
            +       D+S++  + ++L    E     + +   AIA+FD+       ++ ++  + 
Sbjct: 346 VVQWFGTNTDISEQKRMEEELREREEQLRLFIEHAPAAIAMFDREMRYMAVSQRWLTDYG 405

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--Q 398
           +    L      D   E       +PE+      +    SV ++ +   D +   +G  Q
Sbjct: 406 MGGHNLLGRSHYDIFPE-------IPERWKKIHQRGLAGSVERAED---DPFLRADGATQ 455

Query: 399 TLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-P 452
            L   V          GG +   E++T +   E       K            +A+    
Sbjct: 456 WLRWEVRPWYTAQGAIGGIVVFSEDITARKMAEQVLRERDKQFKMVFQASPAPMAIVSFG 515

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           + R   +N A+  L       L  G   R +    ++      G   FAA     D E +
Sbjct: 516 ESRYVYANDAYLRLTGYGAGEL-IGRTTREVGIWDAKDARGPLG-GFFAAGEKVVDSEMR 573

Query: 513 --SLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             +  G ++  LLS   +E    P      +    ++T+    E  L    +AL      
Sbjct: 574 ITTRSGAVKSVLLSIEFMEIDGRP----HVLAVAKDITERKLVEEELRHSRDALEDRVRE 629

Query: 569 KNS-----------FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +             F    S++L+ PL  +  F + L+     +L +    Y++ +  ++
Sbjct: 630 RTRELESRNAELENFFYITSHDLQEPLRKVQVFGERLRLEYAEALGAAGKDYLKRMEGAA 689

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             + +L+ND+LD + V  G     Y+   L +++ +  + +   +      + V     L
Sbjct: 690 ARMQSLINDLLDYSQVATGAHVFVYA--DLGEIVRQSAEDLDRLVEMTGATVTV---EDL 744

Query: 678 GSFVADRQRLLQIFSKILSNAMDF---SSKGSTVILKAARDNGD--FIFSVKNNGSSIPE 732
                D  ++ Q+F  +LSNA+ +   +     V  +   D G      SV +NG     
Sbjct: 745 PGAEVDVVQMRQVFQNLLSNALKYHGRNPPEVRVSGEVFSDQGREMVRISVADNGIGFDP 804

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                VF  F     R   +G G+GL+IV   +  H G V+  S           +P
Sbjct: 805 QYKDKVFQPFQRLHGRNAYQGTGIGLAIVRKVVERHKGTVTAESEPGKGARFLVTLP 861


>gi|237718855|ref|ZP_04549336.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451987|gb|EEO57778.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 407

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 167/375 (44%), Gaps = 28/375 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIK--LSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           K     K     +D L + + VF  D  I    S+PA   +     N ++      N+  
Sbjct: 46  KERFRDKYSTRILDALPDMLTVFDHDANIIELASSPATNHVEGISPNNITT----TNVKD 101

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTF 542
              +   ES   ++   I+T      +S     EL+ D VL   E  I PL     +   
Sbjct: 102 ILPKEAYESVRKNMDKVILTG-----ESSTARHELMLDGVLHHYENRIFPLDKKYLLCMC 156

Query: 543 VNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +++    AE+        L        ++D +K++F+ ++S+E+R+PL  I+GF+ L+ 
Sbjct: 157 RDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI- 215

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +   +++QY E I  +S +LLNL NDILDLA+++A  +K N   I L D+  +++
Sbjct: 216 --TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDICLQLE 273

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           Q    K  +N +++ +           D  R++QI S +LSNA  F+ KG  +       
Sbjct: 274 QQFWHK-TQNGVKLILDDVDTDMYTSGDWNRIIQIISNLLSNATKFTPKGE-IHFGYREK 331

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                F VK++G  IP     ++F RF       Q  G GLGL++    +   GG + + 
Sbjct: 332 EDFVEFYVKDSGIGIPAARIATIFRRFGKVDDFVQ--GTGLGLTLCRMLVEKMGGRIWLR 389

Query: 776 SSDEGVTTINCRIPS 790
           S +   +     +P 
Sbjct: 390 SQEGQGSRFYFTLPL 404


>gi|330941410|gb|EGH44230.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 917

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|260899517|ref|ZP_05907912.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037]
 gi|308107606|gb|EFO45146.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037]
          Length = 573

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 114/240 (47%), Gaps = 7/240 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +      +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S
Sbjct: 43  QARNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDS---GLNPIQKRYAEIINRS 99

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL ++ND+LD + ++AG +++      L+ ++ +  Q + ++  E  +      +  
Sbjct: 100 GKTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESD 159

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPED 733
           +  +   D  R+ Q+ + ++ NA+ F+  G   + +     D    +F V + G  I + 
Sbjct: 160 VSRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKK 219

Query: 734 MCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             K++F+ F        Q  G GLGL+I +  +   GG + + S +   +     IP +E
Sbjct: 220 DQKTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEE 279


>gi|326938736|gb|AEA14632.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 896

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 141/315 (44%), Gaps = 29/315 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     + + F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIPS 790
           S+    +T    IPS
Sbjct: 718 SNVGEGSTFTVFIPS 732


>gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ECD227]
          Length = 949

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 117/622 (18%), Positives = 226/622 (36%), Gaps = 85/622 (13%)

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-------KEEIKKRMISSSAL 258
           VW R     + W    ++ N      + +  +     L           I++     +  
Sbjct: 117 VW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGGDNLCMANFGLRDMPIERDSALEALH 175

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----- 313
           E+      +  +   N  + I            A+           L    + +      
Sbjct: 176 ERIMKYRNAPQDETGNNLFWIGEGPRPGIGYFYALTPVYLANRLQALLGVEQTIRMENFF 235

Query: 314 ---NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
              +L + + I D+N        + + L   D                +++  +  ++ +
Sbjct: 236 TPGSLPMGVTILDENG------HTLISLTGPD--------------NKIKAEPRWMQERS 275

Query: 371 W----KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT--------SNPRGGTIWMFEN 418
           W      ++E +   +    +    + +P  Q L  I          +   G  ++    
Sbjct: 276 WFGYTSGFRELVLKKHLPPSSLSIVYSVPVDQVLEHIRILILNAILLNVLVGAALFTLAR 335

Query: 419 LTVQV------DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEE 471
           +  +           +     +   + +     G+ +    DG   LSN     L  T  
Sbjct: 336 MYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYL 391

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           N L+     R     C +  N       F  ++TS +    +LQ +           +I 
Sbjct: 392 NMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI- 440

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                      V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  
Sbjct: 441 --------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNL 492

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++
Sbjct: 493 DLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVM 549

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  +IL
Sbjct: 550 NHITANYLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG-CIIL 608

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
             ARD       V++ G  IP      +F+ F       +   +G GLGL+I E  IN+ 
Sbjct: 609 HLARDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMM 668

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
            G +S+ S     +    RIP 
Sbjct: 669 DGDISVDSEPGMGSQFTIRIPL 690


>gi|301022112|ref|ZP_07186038.1| PAS domain S-box [Escherichia coli MS 69-1]
 gi|300397708|gb|EFJ81246.1| PAS domain S-box [Escherichia coli MS 69-1]
          Length = 778

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 150/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +             G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGNPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|288554259|ref|YP_003426194.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288545419|gb|ADC49302.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 471

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 3/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            ++ + +  ++  ++ +      +S+ELR+PLT   G+ ++L   +  S   K   Y+  
Sbjct: 225 HSINQMSNKIQNYEQQRTQLFVDISHELRTPLTYFKGYVEILLNGEAKSEEDKVK-YLTL 283

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   S  L  L+ D+ DL+T++     L  + I L  ++      I   + +  I + V 
Sbjct: 284 LYKQSGRLQRLIQDLFDLSTMEQKGFTLQETQISLETVMINALDLIGPSIEQKEIELHVQ 343

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                   + D  RL Q+   +L NA  +SS G  + +   +DN + I  V + G  IP+
Sbjct: 344 LSPFPIYILGDEYRLQQVIINLLENAKKYSSAGGVIKVLTYKDNNNCIIEVIDYGIGIPK 403

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                ++ R         R   G GLGL+I +  I LHGG + + S +   +T    +P 
Sbjct: 404 KDIHRIWERLYRVDKSRSRETGGSGLGLTICKRIIELHGGQIIVESEEGKGSTFKIILPI 463

Query: 791 KE 792
            E
Sbjct: 464 LE 465


>gi|218234881|ref|YP_002365770.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
 gi|218162838|gb|ACK62830.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
          Length = 896

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|83591667|ref|YP_425419.1| periplasmic sensor Signal transduction histidine kinase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83574581|gb|ABC21132.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 620

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 135/303 (44%), Gaps = 8/303 (2%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-----NAQTMLTFVNVTDSVR 550
           G  L   +  S+D   +S    L     ++    ++ L      + Q       +     
Sbjct: 303 GSPLLVTVSASYDGLLRSWWQVLPYHLGAIACIILVILALVLKVHRQIRHLNGLIVALSN 362

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E AL     +  +A+  K  F+ ++S+ELR+PL  IIGF+D+L     G+L  +Q  Y 
Sbjct: 363 REAALVAARRSSEEANRAKTLFLANMSHELRTPLNAIIGFSDMLANGIHGALADRQQDYA 422

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+ S+  LL+L+NDILD+A +++G   L+     L  ++   ++ +  ++ E  + + 
Sbjct: 423 RDINLSALHLLDLINDILDVAKIESGGYLLHERPCNLAAIIRAAERMLGPRVREKGLVMD 482

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSS 729
            +        +AD + + Q+   +LSNA+ F+ +G  + +     + G  +  V + G  
Sbjct: 483 TVCVDGEAWVMADERAMQQVLLNLLSNAVKFTPEGGRITVSLGLNEGGGMVLVVGDTGPG 542

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    V   F            G GLGL + ++ +  H G + + S     T ++  
Sbjct: 543 IPAEHLALVLEPFYQVGEVETRSHEGTGLGLPLAKALVEKHEGALRLDSQPGQGTRVSVT 602

Query: 788 IPS 790
           +P+
Sbjct: 603 LPA 605


>gi|229042838|ref|ZP_04190574.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676]
 gi|228726498|gb|EEL77719.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676]
          Length = 883

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 465 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 705 SNVGEGSTFTVYIP 718


>gi|104779398|ref|YP_605896.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila
           L48]
 gi|95108385|emb|CAK13079.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila
           L48]
          Length = 592

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 151/372 (40%), Gaps = 24/372 (6%)

Query: 422 QVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +    T  + L+   +     +D + +G+ +    GR++  NP  +     +  RL    
Sbjct: 240 RKHQATNIDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWDPGRLGM-- 297

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537
                  + +      +       ++     +R      LE+  +  +L YS+ P+ + Q
Sbjct: 298 -------SLAEALQRPELEQQLRQVLRGGSLDRPPDDLNLEVDEESRLLTYSLTPVSHPQ 350

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    +      E+            + +++ FV   S+ELR+P+T +     LL+  
Sbjct: 351 GPILGAVMVLHDVTEQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLRER 401

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 ++++  ++ I+     L  L+ND+L+ +   +G+ KL  +   L++L    +  
Sbjct: 402 ISFPAGARENDLLDTIAEEMQRLTQLINDLLNFSRYQSGLQKLELAPCALDELFERAQAR 461

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A +     I +    +  L    AD  +L ++   +L NA+  ++ G  + L A R   
Sbjct: 462 FAEQAANKQIELLRELEPPLPRIQADAAQLDRVLDNLLHNAIRHTASGGRIRLHARRHAE 521

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I SV++NG  I       +F  FV      ++ G GLGL++ +  + LHGG + + S 
Sbjct: 522 RVIISVEDNGEGIAYGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVFSR 579

Query: 778 DEGVTTINCRIP 789
               T     +P
Sbjct: 580 PGQGTQFYMALP 591



 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 62/200 (31%), Gaps = 32/200 (16%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            + F + I+    ++  + +   +    +        ++ ++   FG    A+   +   
Sbjct: 191 ARRFGQPIEALAKAADQVGQGNFDVTLPVTQAT----ELNQLTRRFGLMADALRKHQATN 246

Query: 301 VNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA-------TNP 350
           +++ L        +L ++   + I D+   L+  N         D   L          P
Sbjct: 247 IDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWDPGRLGMSLAEALQRP 306

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
             ++ L  +     L    +    + +  S                  T  +   S+P+G
Sbjct: 307 ELEQQLRQVLRGGSLDRPPDDLNLEVDEESRLL---------------TYSLTPVSHPQG 351

Query: 411 ---GTIWMFENLTVQVDLET 427
              G + +  ++T Q   E 
Sbjct: 352 PILGAVMVLHDVTEQRAFER 371


>gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1157

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 5/247 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A R++++K   L    + K+ F+ ++S+ELR+PL +I+    +LK +K  +L   Q +Y
Sbjct: 470 EARRSISQKMRELETTGKYKSEFLANMSHELRTPLNSILVLARILKDNKAQTLTEDQIKY 529

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  +   LL L+NDILDL+ +++G +++    + ++++L +V+   A      NI  
Sbjct: 530 STVIFNAGNDLLTLINDILDLSKIESGKLEILNEKVKVSEILKDVESLFAEVAKNKNITF 589

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
               +  +  ++  D  R  Q+   +LSNA  F+S+  +V + A  D    +   S+K++
Sbjct: 590 TTQQNNNVPEYILTDMVRSQQVIKNLLSNAFKFTSENGSVSVIANLDETGKNLALSIKDS 649

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP D  K +F  F        R   G GLGLSI     +L GG + + S     +  
Sbjct: 650 GIGIPYDKQKLIFEAFQQADGSTSRKYGGTGLGLSISRELTHLLGGAIKLKSKPGEGSEF 709

Query: 785 NCRIPSK 791
              +P +
Sbjct: 710 TLLLPLE 716


>gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
 gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
          Length = 919

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKSELNPTQRDHLHTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSV--KNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R   N      V  ++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNKGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|296155941|ref|ZP_06838780.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295893447|gb|EFG73226.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1188

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 3/247 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +RA+  L      L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q
Sbjct: 467 DLLRAQDDLAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNLTEEQ 526

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ ++  L  +++         +
Sbjct: 527 VRYAETIHASNSDLLVLINDILDLSKVEAGQVTVELETVSIDATLQALEEMFKPMAAARH 586

Query: 667 IRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +R+      G   +F++D QR+ QI   +LSNA+ F+  G   +  A  D G     V++
Sbjct: 587 LRLAFERLPGTPDTFISDGQRVTQILRNLLSNAVKFTEHGEVALSVAPTDGGMLRIDVRD 646

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I  D    +F  F         Q  G GLGLSI   F  L GG ++++S     + 
Sbjct: 647 SGIGIAPDKLDMIFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSV 706

Query: 784 INCRIPS 790
               +P 
Sbjct: 707 FTLWLPL 713


>gi|37523730|ref|NP_927107.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214735|dbj|BAC92102.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 342

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 155/363 (42%), Gaps = 41/363 (11%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            + E +D L  G+ V   +GR+ L N A  SL  T+   +  G                 
Sbjct: 3   AEQEILDCLPFGLVVTDREGRVLLWNDAMESLTGTKAADVQGG--------------WIQ 48

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                 A I T         QG + L +              Q+    V    S    R 
Sbjct: 49  CWSAEVAEIGT---------QGHVFLRNG-----------EEQSFSLSVRTAVSREGHRV 88

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                ++ ++ D+ +  FV  VS+ELR+PLT+I GF D L  S      ++  +++  I 
Sbjct: 89  WVFIPDSRQELDQAQTDFVSTVSHELRTPLTSIKGFVDTLLRSGSQLSEAQHRRFLRIIK 148

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  LV DIL ++ + +G +K     + L ++++ V +++A K     +R ++   
Sbjct: 149 NQADRLTRLVEDILTVSRIQSGRLKNLPQRLDLGEMIDRVFENLAQKYAAQRMRREL--P 206

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIP 731
           G L    AD+ RL QI + ++ NA+ +S  G+ V + A     D      +V++ G  IP
Sbjct: 207 GALPEVWADQDRLEQILTNLIDNALKYSEHGAPVCVSADLDPEDRNVLWIAVRDLGIGIP 266

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+    +FNRF         +R G GLGL I +S +   GG + + S     +T    +P
Sbjct: 267 EENLDQIFNRFSRIDSPLTREREGTGLGLYITKSLVESLGGTIHVESRYGVGSTFTVSLP 326

Query: 790 SKE 792
           + +
Sbjct: 327 AVQ 329



 Score = 38.0 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 33/246 (13%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP---SNDELLEFLRS 361
           +    EIL  L   + + D+   +   N +   L     A +        + E+ E    
Sbjct: 1   MLAEQEILDCLPFGLVVTDREGRVLLWNDAMESLTGTKAADVQGGWIQCWSAEVAEIGTQ 60

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-------TLHVIVTSNPRGGTIW 414
            +        +++  ++ +   S E H+    +P+ +       T  V   S+     + 
Sbjct: 61  GHVFLRNGEEQSFSLSVRTAV-SREGHRVWVFIPDSRQELDQAQTDFVSTVSHELRTPLT 119

Query: 415 M---FENLTVQVDLE------TKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAF 463
               F +  ++   +       ++  ++K Q + +  L E +        GR+       
Sbjct: 120 SIKGFVDTLLRSGSQLSEAQHRRFLRIIKNQADRLTRLVEDILTVSRIQSGRL------- 172

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               K    RL  G  I  +    ++ Y            +     ++  L+  L  L D
Sbjct: 173 ----KNLPQRLDLGEMIDRVFENLAQKYAAQRMRRELPGALPEVWADQDRLEQILTNLID 228

Query: 524 SVLEYS 529
           + L+YS
Sbjct: 229 NALKYS 234


>gi|311278255|ref|YP_003940486.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747450|gb|ADO47202.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 915

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTDLNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNSLDEVVTLLAHSAHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R    +       +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQVEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPESDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|260175269|ref|ZP_05761681.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315923502|ref|ZP_07919742.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697377|gb|EFS34212.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 543

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 163/379 (43%), Gaps = 24/379 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENR---LSPG 477
            + + +     K     ++++   + V  F     +  +N +  + +   E+        
Sbjct: 166 REYKEREVRASKTLSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEGKKCWQ 224

Query: 478 THIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDS--VLEYSIIPL 533
              ++    C  +  +    D       + S+D +R   +    + S +   ++  I   
Sbjct: 225 ALYKDKTGEC-EFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQIA-- 281

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                ++T V++      E  L    E     D +K++F+ ++S+E+R+PL  I+GF  L
Sbjct: 282 ----HVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASL 337

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  S       ++  YV+ +  ++ +LL L++DILDL+ ++AG +      + +     +
Sbjct: 338 LVES---DNKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLGIKSFCED 394

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKA 712
           + ++   K  +  + + +  D        D++RL+Q+ +  ++NA+ F+++G  V+    
Sbjct: 395 IIRNYDIK-EDKPVPVLLAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEGQIVLEYHY 453

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             ++ +  F+V + G  I  D    VF+RFV        +G GLGLSI  S I   GG +
Sbjct: 454 KAESNEIEFAVTDTGMGIAPDKVNQVFDRFVKLNSFS--KGTGLGLSICRSIIEHLGGTI 511

Query: 773 SISSSDEGVTTINCRIPSK 791
            + S     +      P +
Sbjct: 512 GVESEMGNGSRFWFTHPLR 530


>gi|224502418|ref|ZP_03670725.1| hypothetical protein LmonFR_07844 [Listeria monocytogenes FSL
           R2-561]
          Length = 610

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +L     L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTLDKPYVLRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKNKGTIIKFTLP 600


>gi|187926379|ref|YP_001892724.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187728133|gb|ACD29297.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 678

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 154/379 (40%), Gaps = 26/379 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           T+     +     +      ++++  D      N    +        L P   +      
Sbjct: 153 TQQRLSQQRLLAALQASP--ISLYDVD------NTMHFTWVHNPVFGLQPEQLLGRTVRE 204

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLT 541
                  S   +    +I +    R             V +  ++PL +           
Sbjct: 205 VFGRRAASRLTEAGQRVIATGTPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNA 264

Query: 542 FVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +++++  +AE        A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL
Sbjct: 265 VIDISERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLL 324

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                    +   + +E I  S+   ++L++D+LD++ + +G + L    + L D+L   
Sbjct: 325 NMRAYD--EAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERA 382

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +++I     + NI I+      +     D  RL Q+F  +L+NA+ F+ +G  + L    
Sbjct: 383 RETIEPMARQKNITIETEF-LPVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHP 441

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                + +V++ G  I       +F+RF        RR  G+GLGL+I +  + LH G +
Sbjct: 442 APEGVVATVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 501

Query: 773 SISSSD-EGVTTINCRIPS 790
           + +SS  +  TT+   +P 
Sbjct: 502 TAASSGADRGTTMAVSLPL 520


>gi|16802334|ref|NP_463819.1| hypothetical protein lmo0288 [Listeria monocytogenes EGD-e]
 gi|47096377|ref|ZP_00233972.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498863|ref|ZP_03667212.1| hypothetical protein LmonF1_03828 [Listeria monocytogenes Finland
           1988]
 gi|254828748|ref|ZP_05233435.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|254831884|ref|ZP_05236539.1| hypothetical protein Lmon1_11045 [Listeria monocytogenes 10403S]
 gi|254900523|ref|ZP_05260447.1| hypothetical protein LmonJ_11934 [Listeria monocytogenes J0161]
 gi|254913526|ref|ZP_05263538.1| sensory box histidine kinase [Listeria monocytogenes J2818]
 gi|254937893|ref|ZP_05269590.1| sensory box histidine kinase [Listeria monocytogenes F6900]
 gi|255026055|ref|ZP_05298041.1| hypothetical protein LmonocytFSL_06310 [Listeria monocytogenes FSL
           J2-003]
 gi|284800587|ref|YP_003412452.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578]
 gi|284993773|ref|YP_003415541.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923]
 gi|16409653|emb|CAD00815.1| lmo0288 [Listeria monocytogenes EGD-e]
 gi|47015251|gb|EAL06189.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601155|gb|EEW14480.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|258610501|gb|EEW23109.1| sensory box histidine kinase [Listeria monocytogenes F6900]
 gi|284056149|gb|ADB67090.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578]
 gi|284059240|gb|ADB70179.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923]
 gi|293591536|gb|EFF99870.1| sensory box histidine kinase [Listeria monocytogenes J2818]
          Length = 610

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +L     L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTLDKPYVLRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKNKGTIIKFTLP 600


>gi|300868138|ref|ZP_07112772.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300333873|emb|CBN57952.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 939

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 112/258 (43%), Gaps = 25/258 (9%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +   A   A+  K  F+ ++S+ELR+PL  I+G+  +L+   L + + K    +  I
Sbjct: 451 ELKDAKIAADTANRAKTEFIANMSHELRTPLNGILGYAQILQ--PLKTTDEKVKDGLRII 508

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
               + LL L+NDILD++ ++A  M+L+ +       L+ V +    K  +  I +    
Sbjct: 509 YQCGSHLLTLINDILDISKIEAQKMELHPTDFHFPSFLSGVVEICRLKAEQKGIVLAYQP 568

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD----------- 718
              L  S  +D +RL Q+   +LSNA+ F+ +G     V +   ++              
Sbjct: 569 QNSLPDSIRSDEKRLRQLLINLLSNAIKFTDEGRVDFKVEVIGTQECPQAELREKSSITN 628

Query: 719 -------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGG 770
                    F +++ G  I  +  + +F  F   +      +G GLGL+I +  + L G 
Sbjct: 629 HQLPITKIRFQIEDTGIGINSEQLEKIFLPFEQVSEASRNHQGSGLGLAISQKIVELMGS 688

Query: 771 HVSISSSDEGVTTINCRI 788
            + + S     +T    +
Sbjct: 689 TIKVKSQPGVGSTFLVEL 706


>gi|254163152|ref|YP_003046260.1| aerobic respiration control sensor protein ArcB [Escherichia coli B
           str. REL606]
 gi|253975053|gb|ACT40724.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli B str. REL606]
          Length = 778

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEICKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEICKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|254474320|ref|ZP_05087709.1| two component sensor kinase [Pseudovibrio sp. JE062]
 gi|211956595|gb|EEA91806.1| two component sensor kinase [Pseudovibrio sp. JE062]
          Length = 767

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 170/370 (45%), Gaps = 6/370 (1%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +T ++     +   ++GV V    G I+ +N +  +L+   E+ L  G       A 
Sbjct: 394 EHLHTRIEELESVLATATDGVLVMDQRGIIRSANHSAEALFNASEDDLL-GAPFTTFLAD 452

Query: 487 CSRYYNESDGWDLFAAIITS-FDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTML-TFV 543
            S          L A  ++S  +D R+ +  TL+  +  + L    +   N Q       
Sbjct: 453 ESHIAALDYLDGLVANGVSSVLNDGREIICQTLDGDIFPTFLSMGRVSSANEQLFCAVLR 512

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           ++T   RAE  L        +A+  K+ ++  +S+E+R+PL  +IGF+++++  + G L 
Sbjct: 513 DITQFKRAEEELVSARYKAEEANTHKSEYLTKISHEIRTPLNAVIGFSEVMQEERFGELG 572

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +  +Y   I  S + +L L+ND+LDLA ++AG M L +  +   D++NE    +  + 
Sbjct: 573 NVRYKEYARDIHRSCSHMLTLINDLLDLAKIEAGKMDLAFEAVSAADIINECVALLQPQA 632

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIF 721
           +E  + I+  +   +   VAD + L QI   +LSNA+ F+  G  VI+    D NG+   
Sbjct: 633 NEQRVIIRASTPLSVPKIVADPKTLRQITLNLLSNAIKFNRSGGQVIVSLVLDPNGEVHL 692

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G  + +   ++    F          G GLGL + ++ +  +    SI+S ++  
Sbjct: 693 RVRDTGHGMSKADLEAALQPFRRLNASASTEGSGLGLPLTKALVEANRASFSINSEEDEG 752

Query: 782 TTINCRIPSK 791
           T      P +
Sbjct: 753 TLAEVTFPPQ 762


>gi|167031168|ref|YP_001666399.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
 gi|166857656|gb|ABY96063.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
          Length = 588

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 155/372 (41%), Gaps = 24/372 (6%)

Query: 422 QVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +    T  + L+   +     +D + +G+ +    GR++  NP  +      ++R+  G 
Sbjct: 236 RKHQATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWSDSRVGSG- 294

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537
                    +      +       ++     +R+     +E+  +  +L YS+ P+ + Q
Sbjct: 295 --------LANALQRPELEQQLRQVLRGGSLDRQPDDLNIEVDEETRLLTYSLTPVSHPQ 346

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    +      E+            + +++ FV   S+ELR+P+T +     LL+  
Sbjct: 347 GPILGAVMVLHDVTEQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLRER 397

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                +++++  +E I      L  L+ND+L+ +   +G+ KL  +   L++LL   +  
Sbjct: 398 VKFPPDARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCALDELLERAQLR 457

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            A +  +  I +    +  L    AD  +L ++   +L NA+  ++ G  + L A R   
Sbjct: 458 FAEQAQQKQIELLKELEAPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHAE 517

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I S+++NG  I       +F  FV      ++ G GLGL++ +  + LHGG + + S 
Sbjct: 518 RVIISIEDNGEGIAYGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVFSR 575

Query: 778 DEGVTTINCRIP 789
               T     +P
Sbjct: 576 PGQGTQFYMALP 587



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            + F + I+    ++  L K   +    +        ++ ++   FG    A+   +   
Sbjct: 187 ARRFGQPIEALAKAADQLGKGNFDVTLPVTQAT----ELNQLTRRFGLMADALRKHQATN 242

Query: 301 VNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           V++ L        +L ++   + I D+   L+  N                  S+  +  
Sbjct: 243 VDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQR---------QLGWSDSRVGS 293

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSS-----ETHKDTWHLPNGQTLHVIVTSNPRG-- 410
            L +A + PE            S+ +       E  ++T  L    T  +   S+P+G  
Sbjct: 294 GLANALQRPELEQQLRQVLRGGSLDRQPDDLNIEVDEETRLL----TYSLTPVSHPQGPI 349

Query: 411 -GTIWMFENLTVQVDLET 427
            G + +  ++T Q   E 
Sbjct: 350 LGAVMVLHDVTEQRAFER 367


>gi|1346440|sp|P48027|GACS_PSESY RecName: Full=Sensor protein gacS
 gi|151329|gb|AAA25877.1| regulatory protein [Pseudomonas syringae]
          Length = 907

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 260 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 316

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 317 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 376

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 377 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 436

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 437 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 496

Query: 787 RI 788
            +
Sbjct: 497 SL 498


>gi|307329202|ref|ZP_07608367.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306885101|gb|EFN16122.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1851

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1325 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1384

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  G+L+ KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 1385 NADGNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEA 1444

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---- 711
            +      E  +   V    +L  +   D QRLLQ+   +LSNA+ F+  G+  ++     
Sbjct: 1445 TFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAG 1504

Query: 712  -----------------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
                                D     FSV + G  I     + +F  F         +  
Sbjct: 1505 ADVPHAIREQLLEHGALRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYG 1564

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +  +S     +T    +P 
Sbjct: 1565 GTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1602


>gi|302503015|ref|XP_003013468.1| sensor histidine kinase/response regulator, putative [Arthroderma
           benhamiae CBS 112371]
 gi|291177032|gb|EFE32828.1| sensor histidine kinase/response regulator, putative [Arthroderma
           benhamiae CBS 112371]
          Length = 1345

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 113/250 (45%), Gaps = 24/250 (9%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 746 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 803

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 804 SLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQVDSSVP 863

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------DNGDF 719
              + D  RL QI   ++ NA+ F+  G  V L+  +                  D   +
Sbjct: 864 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VTLEIKKHVPPPPAEGEPEREVCADDEYAY 922

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            FSV++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG V ++S 
Sbjct: 923 EFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSE 982

Query: 778 DEGVTTINCR 787
               +T +  
Sbjct: 983 YGRGSTFHFT 992


>gi|301309905|ref|ZP_07215844.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831479|gb|EFK62110.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 508

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 226/525 (43%), Gaps = 56/525 (10%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIF------DQNRYLQFHNRSFVELWEIDLAFL 346
           ++ ++  T+         +L N+  ++ I+        N    + +    +L+      +
Sbjct: 9   VNTTENKTLEQDYRDLAGLLSNIVDSLPIYFFVKDTGDNFRYVYSSPLMNQLYGRYHNDV 68

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNG--QTLHV 402
                 D  L+           +  +++++    V K+ +  +    +  P G  +T+  
Sbjct: 69  VGKTDFDLFLD----------PVVAQSFRDMDEEVVKTGKMQRFVEQMIDPKGILRTMDT 118

Query: 403 IVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           +    PR       + +  ++T Q  +E + ++  K            +A+    G+I  
Sbjct: 119 MKLLAPREDKPPYLVGISWDITKQRQVEEELHSYNKR-----------LALACQAGKIYP 167

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN--ESDGWDLFAAIITSF-DDERKSLQ 515
               +  +  T E  L     I+++  T + +      D   ++  I T+F   E  S++
Sbjct: 168 W--LWDLVNGTAELSLEENGQIKHVQITHASFTEKIHPDYRKVYENITTAFMRGEIDSMR 225

Query: 516 GTL--ELLSDSVLEYSII-----PLPNAQTMLTFVNVTDS--VRAERALTEKNEALRKAD 566
            +      SD  +    I       P+ + + +   + D    +   A  +      ++D
Sbjct: 226 FSFPCRYFSDEYVWLEKIGEVYEADPDGKPIRSIGILRDMTVDKRHEADVQAKRLAEESD 285

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF+ LL  S        + +Y+  I +S+  LL L+ D
Sbjct: 286 RMKSAFIANMSHEIRTPLNAIVGFSTLLAESDDEEE---KKEYLRIIESSNEFLLQLIGD 342

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ + +G M+  Y+T+ L+++    +Q+ A ++    +++   SDG     V+++ R
Sbjct: 343 ILDISKIKSGKMEFIYTTLRLSEIFAPQQQAFALRVAP-GVKVIFESDGNDYCIVSEKTR 401

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+ +  LSNA+ F+S GS +       +      V + G  I ++   S+FNRFV   
Sbjct: 402 LTQVLTNFLSNAVKFTSSGS-IRFGYRLTDDGIYVYVTDTGMGISKESQASIFNRFVKLN 460

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++G GLGLSI ++ I    G + + S +   +T    IP +
Sbjct: 461 SF--KQGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIPCQ 503


>gi|291613756|ref|YP_003523913.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583868|gb|ADE11526.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 837

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 10/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    + +  E  R+A + K+ F+ ++S+E+R+PL  +IG  DLL  ++   L+ +Q   
Sbjct: 170 KLRNQVNQALEEARRASKAKSDFLSNMSHEMRTPLNGVIGAGDLLLGTR---LDDEQKDL 226

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +  S+ +LL L+++ILDL+ +++G +    +   L+ L+N   +    ++ +  I +
Sbjct: 227 VATLKKSAHLLLKLIDNILDLSKIESGKLVSEKTDFDLHKLVNSTLEMFLPQVEKKGISL 286

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVK 724
            V    +    +  D   L Q+   ++ NA+ F+SKGS  +  A    GD      F V 
Sbjct: 287 SVRFTPETCFMLQGDPLHLQQVLINLVGNAIKFTSKGSVELRIATLQQGDLQTLLRFEVI 346

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I       +F  F        R   G GLG +I +  + L GG + + S     +
Sbjct: 347 DTGIGISPQAQGRIFESFTQADQNITRIYGGTGLGTTISKQLVELMGGKMGVQSEQGIGS 406

Query: 783 TINCRIP 789
                IP
Sbjct: 407 IFWFEIP 413


>gi|170761746|ref|YP_001785690.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408735|gb|ACA57146.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 464

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +     +   +       L    + + K D++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 210 NFKVKSEKMFDDEFGELSDTLNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++++          ++ I   S  L  +V ++LD +   +G M+LN   I + ++++ V
Sbjct: 270 NSNEVDK--EILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMRLNKEEINICEIIDTV 327

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +    + N I  K     KL +   DR R+ Q+   +L NA  F+ +G  V L    
Sbjct: 328 RKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELSTKY 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       VK+ G  I ++    V  +F        +   G+GLSI +  I LH G + I
Sbjct: 388 EEEYITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN--GIGLSICDEIIKLHNGVLHI 445

Query: 775 SSSDEGVTTINCRIP 789
            S +   TTI+ ++P
Sbjct: 446 ESEENKGTTISIKLP 460


>gi|153832942|ref|ZP_01985609.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148870865|gb|EDL69764.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 878

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 135/297 (45%), Gaps = 17/297 (5%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             +II S +          +++ D   E++I              + +  R    + +  
Sbjct: 316 LDSIIHSLNTLIHEHVKGEKVVVDGNDEFTIF------AEQVNRMMEEQNRQTEEILQTK 369

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+   A+  K+ F+  +S+E+R+PL  IIG T++L  S    L+  Q + +  I  SS  
Sbjct: 370 ESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQS---DLSDHQKEVLSDIDTSSHT 426

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDILDL+ +++G ++L+     + +++ +      +K     + + +  D ++ +
Sbjct: 427 LLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSVILFQSKATSKRLELNINLDERIPA 486

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGST-VIL----KAARDNGDFIFSVKNNGSSIPED 733
               D  R+ QI   ++SNA+ F+ +GS  + +       + +    F V + G  I +D
Sbjct: 487 RIKVDDHRIKQIIMNLVSNAVKFTEQGSINIDVNYQESTTQKSVFLTFRVSDTGVGIEQD 546

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              ++F  F         Q  G GLGL+I    + + GG ++ SSS    T+    I
Sbjct: 547 KLDTIFEPFTQEDEGISRQFGGTGLGLAICRQLVAMMGGQLTASSSKGIGTSFEFSI 603


>gi|284167284|ref|YP_003405562.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284016939|gb|ADB62889.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 883

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/690 (16%), Positives = 243/690 (35%), Gaps = 56/690 (8%)

Query: 130 ATEKLRKEGQ-SFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
             E+LR EGQ +FD     ++     +E   S     L    +  I  ++ +     + L
Sbjct: 213 FVEELRAEGQLTFDGHHRRKDGTTYPVEVNTS--YVDLDKEYVLAIARDVTKRREYERYL 270

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
            +  S  +   ++     W      D +    S+ +    E  V  + +      F E I
Sbjct: 271 EDAKSQLEAATEAGAVGTWEWHIPEDEMVVGTSFARTFGIEPEVASEGV--PLDQFIEAI 328

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVR----------VLNSFGEA----GIAID 294
            +       +                + +              V    GE     G   D
Sbjct: 329 HEDDRKRVEVAIEEAVETCGDYEEEYRVWDADDNLRWVVARGHVECDDGEPVRFPGALTD 388

Query: 295 VSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           ++K      +L    E L  L     V + + + +  +   N    E+W  D+    +  
Sbjct: 389 ITKRKRAELKLQQNNEQLETLFEVLPVGVVVAEADGQIIQANDIAHEIWGGDVFDAESVE 448

Query: 351 SNDE--LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             ++  + +        P+++        + +  +  +         +G+   + +   P
Sbjct: 449 EYEQYPVWDAESGERVQPDEMTL----ARVVNGEEVLDPDIYEIEAVDGERRVIRLEGMP 504

Query: 409 RG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VAVFGPDGRIKLSN 460
                      +    ++T + + +       +     +++   G V +F  + R     
Sbjct: 505 VRDEHGEVTRGVATLTDITDRREAQRALEESERRYRTLVENFPNGAVGLFDDNLR----- 559

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             + ++     +RL      R I    +  +      +L      + D E  + +   + 
Sbjct: 560 --YTAVGGQLFDRLDYDPEDR-IGYRFTELHTPDLVEELEPHFRAALDGEASTFEIEYQ- 615

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                L    +P+ +A   +    +      ER   E    L ++++    F    S++L
Sbjct: 616 --GRYLHAHTLPVRDADDEVYAGMLVIRDVTER--REYERMLEESNDRLEQFAYAASHDL 671

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           + PL  +  +  LL+      L+    +++E+    +  +  +++ +L  + V+      
Sbjct: 672 QEPLRMVSSYLQLLERRYDDDLDEDGQEFLEFAVDGADRMREMIDGLLKYSRVETRGDP- 730

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ L+D+L EV   +   + E+N  I       L     D  +L Q+F  +L NA++
Sbjct: 731 -FETVSLDDVLTEVCDDLQVMIQESNAEITTE---DLPRVEGDHGQLRQVFQNLLDNAIE 786

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           +S      + + A RD   ++ SV++NG  I  +    VF  F     RG+  G G+GL+
Sbjct: 787 YSGDDPPRIYIDAERDGDQWLVSVEDNGVGIDPEDTDRVFEVFQRLHARGEHAGTGIGLA 846

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +VE  I  HGG V + S     +T +  +P
Sbjct: 847 LVERIIERHGGDVWVESDPGQGSTFSFTLP 876



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 87/275 (31%), Gaps = 18/275 (6%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
              +     +++ +   I   D        N + V L       L    ++  + +   S
Sbjct: 19  ERTVDRYSTLVNMVDDGIYQLDAEGRFVAVNDAIVSLTGYAREELLGKHASTVIDDEDVS 78

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT------LHVIVTSNPRGGTIWM 415
                     +   +      +  E  + T  + +G+T      LH++V      GTI +
Sbjct: 79  -------RIQREIYQRFTDGDREGEPLEFTARMADGETIPCELELHLLVEDGTFQGTIGV 131

Query: 416 FENLTVQVDLETKYNT-LVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENR 473
             ++  +   E ++    +++    ++H ++ V V  P+ GR    N             
Sbjct: 132 VRDIADRKQTEQEFREHELELFRTLLNHSNDSVLVVDPETGRYLDVNDTACERRGYSREE 191

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
               T +        +    S   +L A    +FD   +   GT   +    +  S + L
Sbjct: 192 FLDLTVMDLETEIPDQEAWRSFVEELRAEGQLTFDGHHRRKDGTTYPVE---VNTSYVDL 248

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                +    +VT     ER L +    L  A E 
Sbjct: 249 DKEYVLAIARDVTKRREYERYLEDAKSQLEAATEA 283



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/399 (12%), Positives = 122/399 (30%), Gaps = 36/399 (9%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK------AIGESRK 242
              +  +  L + +D  ++  D  G  +  N +    T                  E   
Sbjct: 19  ERTVDRYSTLVNMVDDGIYQLDAEGRFVAVNDAIVSLTGYAREELLGKHASTVIDDEDVS 78

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHG----NNKSYKIVRVLNSFGEAGIAIDV--- 295
             + EI +R        +    T    +        + + +V      G  G+  D+   
Sbjct: 79  RIQREIYQRFTDGDREGEPLEFTARMADGETIPCELELHLLVEDGTFQGTIGVVRDIADR 138

Query: 296 --SKEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSN 352
             +++     +L     +L++   ++ + D         N +  E             S 
Sbjct: 139 KQTEQEFREHELELFRTLLNHSNDSVLVVDPETGRYLDVNDTACE---------RRGYSR 189

Query: 353 DELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN--- 407
           +E L+   +    ++P+Q  W+++ E + +  + +          +G T  V V ++   
Sbjct: 190 EEFLDLTVMDLETEIPDQEAWRSFVEELRAEGQLTFDGHH--RRKDGTTYPVEVNTSYVD 247

Query: 408 -PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
             +   + +  ++T + + E              +  + G   +       +   +F   
Sbjct: 248 LDKEYVLAIARDVTKRREYERYLEDAKSQLEAATEAGAVGTWEWHIPEDEMVVGTSFART 307

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +  E    S G  +            +     +  A+ T  D E +      +     V+
Sbjct: 308 FGIEPEVASEGVPLDQFIEAIHEDDRKRVEVAIEEAVETCGDYEEEYRVWDADDNLRWVV 367

Query: 527 EYSIIPLPNAQTMLTF---VNVTDSVRAERALTEKNEAL 562
               +   + + +       ++T   RAE  L + NE L
Sbjct: 368 ARGHVECDDGEPVRFPGALTDITKRKRAELKLQQNNEQL 406


>gi|168702308|ref|ZP_02734585.1| two-component sensor histidine kinase PhoR [Gemmata obscuriglobus
           UQM 2246]
          Length = 461

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 141/381 (37%), Gaps = 28/381 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            F  ++ ++    +     + Q    +  + EGV       R+  +N     L + +   
Sbjct: 98  TFNAMSARLASTFRLLDHDREQLRAILSGMVEGVVAIDDQRRVLFANERAGQLLEFDPR- 156

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                  + +          +    +    +T+ +  R+     +       LE  +   
Sbjct: 157 -------KAVNQKLCDVTRLAPFHAIVEQGLTAAEPHREEFD--VPGSGGRHLEVYVSRF 207

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P        V V D+    +A           + ++  FV + S+EL++P+  I    + 
Sbjct: 208 PGQGMPGAVVVVNDTTEVRQA-----------ERMRQDFVANASHELKTPIAVIKSSVEA 256

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+       ++  + ++E ++  S  +  LV D+L L+ +++G + L    +VL+  +++
Sbjct: 257 LQDGAAEDPHT-LASFLEQVARESDRMTYLVKDMLSLSRIESGSLGLEPRVVVLDREISD 315

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS---FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +    +     + +         +     AD   L Q+   ++ NA+ ++  G  + +
Sbjct: 316 CMERHHPRADTKTLTLVEKPPPDAPANVAAWADPDALRQVMDNLVDNAIKYTPNGGRITV 375

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
           +         F V++ G  IPE     VF RF        R     GLGLSIV+  +   
Sbjct: 376 RWGATADTVSFEVEDTGVGIPEGDVNRVFERFYRVDRARGRAEGSTGLGLSIVKHLVQAM 435

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G V ++S     TT    +P
Sbjct: 436 RGQVRVNSKLGKGTTFRVTLP 456



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 30/182 (16%)

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           L     A  A   S    ++        IL  +   +   D  R + F N    +L E D
Sbjct: 95  LAETFNAMSARLASTFRLLDHDREQLRAILSGMVEGVVAIDDQRRVLFANERAGQLLEFD 154

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTL 400
                    N +L +  R A           +   +     ++E H++ + +P   G+ L
Sbjct: 155 P----RKAVNQKLCDVTRLAP----------FHAIVEQGLTAAEPHREEFDVPGSGGRHL 200

Query: 401 HVIVTSNPRGGT---IWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
            V V+  P  G    + +  + T     E            +  T + V   +++ L +G
Sbjct: 201 EVYVSRFPGQGMPGAVVVVNDTTEVRQAERMRQDFVANASHELKTPIAVIKSSVEALQDG 260

Query: 447 VA 448
            A
Sbjct: 261 AA 262


>gi|168211800|ref|ZP_02637425.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170710250|gb|EDT22432.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
          Length = 623

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/513 (18%), Positives = 204/513 (39%), Gaps = 43/513 (8%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           EI +  +       L +LT  +   D +      N++F     I+  ++      D   +
Sbjct: 103 EINLKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKVGIEKKYIIGKTDKDIFFD 162

Query: 358 FLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRG 410
                   P ++    KT +E I S  K     +  +   +G     + +      N   
Sbjct: 163 -------DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVK 215

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I +  +++ +  +E +     K+  E  ++L + V +     +    N AF  L+   
Sbjct: 216 GIIGLTRDISYKKAIEYRLKKNDKMFFEVFNYLDD-VVIIKEGEKTIYVNHAFEKLYGLN 274

Query: 471 ----ENRLSPGTHIRNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDS 524
                   S    +  I       ++  D  D F   A I   D+E +++          
Sbjct: 275 CKELYKEKSMIVKLDRIHPEDRYKFSNIDFEDFFMEKARIVRADNEVRNV---------- 324

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +   + I   N +++   + + D       +T+  E   + ++++  F  ++S+E ++P+
Sbjct: 325 LFRANSIKNENGESIRRIIVIND-------ITDTIEKSNEMEKLRMEFFANISHEFKTPV 377

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLN 641
             I     LL+     +++  +  Y+ YI     +   LL L+N+++D   ++AG   +N
Sbjct: 378 NLIYSALQLLELKLKNNIDRDEESYINYIKMAKQNVFRLLKLINNLIDSTKLEAGFFNVN 437

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +   + ++  SI     +N I I   ++ +      D   L +I   ILSNA+ F
Sbjct: 438 IKNHDIVSCVEDITMSICGFAEKNKISITFDTEEEEKIIAFDLNHLERILLNILSNAIKF 497

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           + +   + +  + D      S+K+ G  I +D    +F+RF    +R  +   G G+GL 
Sbjct: 498 NRENGNIDVYMSFDERYANISIKDTGIGIQKDKIDLLFDRFKKINNRLTKVNEGSGIGLF 557

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           I +  + ++GG + ++S     T    ++P K+
Sbjct: 558 IAKELVKINGGEMIVNSELGEGTEFIIKLPIKK 590



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 101/282 (35%), Gaps = 42/282 (14%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L     +  +  DSL   V+ +D  G  +  N +++      GI  +  IG++ K    +
Sbjct: 106 LKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKV---GIEKKYIIGKTDKDIFFD 162

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------------GEAGIAI 293
              ++ +    ++    +     +G    ++                      G  G+  
Sbjct: 163 DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVKGIIGLTR 222

Query: 294 DVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+S +  +  +L       +E+ + L   + I  +     + N +F +L+ ++   L   
Sbjct: 223 DISYKKAIEYRLKKNDKMFFEVFNYLDD-VVIIKEGEKTIYVNHAFEKLYGLNCKELYKE 281

Query: 350 PSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLP------NGQTLHV 402
            S    L+ +   ++     ++++ +      + ++    ++           NG+++  
Sbjct: 282 KSMIVKLDRIHPEDRYKFSNIDFEDFFMEKARIVRADNEVRNVLFRANSIKNENGESIR- 340

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                     I +  ++T  ++   K N + K++ E   ++S
Sbjct: 341 ---------RIIVINDITDTIE---KSNEMEKLRMEFFANIS 370


>gi|116513325|ref|YP_812231.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092640|gb|ABJ57793.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 620

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 160/424 (37%), Gaps = 41/424 (9%)

Query: 385 SETHKDTWHLPNGQ-TLHVIVTSNPRGGTIWM-FENLTVQVDLE-TKYNTLVKVQGETID 441
            E  +    + +G  +  V + SN   G +   F  L+ +++    +  +  +     + 
Sbjct: 210 EELRQQAIQVADGDYSTQVKIYSNDELGQLGAAFNTLSTKIERSNEQSESERRRLDSVLS 269

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGWD 498
           H+++GV      G + + N   +     +    +    I  +      Y ++   S+  D
Sbjct: 270 HMTDGVIATDRHGNVSIMNQMAQDFLDVKAED-AIKKPISQVLGLGEDYTSQDLISNQSD 328

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           +   +    DDE              +L  S   +      ++          E+     
Sbjct: 329 MQVTVNAGTDDE-------------MILHASFTLIKRVTGFVSGAVCVLHDVTEQ----- 370

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                K ++ +  FV +VS+ELR+PLT++  + + L             Q+++     + 
Sbjct: 371 ----IKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKD-PEIAPQFLDVTQKETE 425

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI---------ATKMHENNIRI 669
            ++ +VND+L L+ +D G  KL    +   D ++ +               +       I
Sbjct: 426 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 485

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K     +      D  ++++    I++NA+ +S  G T+ ++  ++    + S+ + G  
Sbjct: 486 KRDLGNQALWVEIDTDQMMRAIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 545

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +F+RF          + G GLGL+I +  +  HGG +   S +   +T    
Sbjct: 546 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 605

Query: 788 IPSK 791
           +P +
Sbjct: 606 LPYE 609


>gi|68299595|dbj|BAE02741.1| two-component regulatory system sensor kinase GacS [Pseudomonas
           fluorescens]
          Length = 917

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S++   + +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEM---SPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 + V D  RL QI + ++SNA+ F+ +G+ V      D  +       SV++ G 
Sbjct: 387 YRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +   R+  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPVGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|323491190|ref|ZP_08096376.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG
           20546]
 gi|323314558|gb|EGA67636.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG
           20546]
          Length = 929

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT+    L + Q+ Y++ 
Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTT----LTNSQTDYLQT 330

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L          L EV    AT  HE  + + + 
Sbjct: 331 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFQGSLEEVVSLQATSAHEKGLELTLK 390

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNG 727
            D K+ +  V D  R+ Q+ + ++ N++ F+ +G+  + ++      D +   F V++ G
Sbjct: 391 IDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQKDDLVELQFMVRDTG 450

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 451 IGISERQQSQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 510

Query: 786 CRI 788
             +
Sbjct: 511 FTL 513


>gi|183221820|ref|YP_001839816.1| putative two-component regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911892|ref|YP_001963447.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776568|gb|ABZ94869.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780242|gb|ABZ98540.1| Putative two-component regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 723

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 167/389 (42%), Gaps = 31/389 (7%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ +  +E +Y  +  +      +   G     PDG     N      +   E  L    
Sbjct: 209 ISEKEMIEDRYFEIEDLYQ----NSPVGFHSLDPDGFFLRVNRTESEWFGYSEKELIGKK 264

Query: 479 HIRNIAATCSR---------YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              ++    SR         +  +    +L   +I    D        + L S ++   +
Sbjct: 265 KWSDLLTENSRNIFFQNFPIFKKQGYINNLIFEVIKKNGD-----SIFVNLSSTAIFAQN 319

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            + + +   +   V+VT S+  ER L    +   +A++ K+ F+ ++S+ELR+PL  +IG
Sbjct: 320 GLMIRSRSVL---VDVTQSIVYERELLLAKKKAEEANKAKSDFLSNMSHELRTPLNAVIG 376

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +  L      +  ++Q + ++ +  SS  LL+L+NDILD   ++  ++++      L D
Sbjct: 377 ISLWLLEE---NPKTEQLENLKNLKFSSESLLSLINDILDFNKIEERLVEIERIDFNLKD 433

Query: 650 LLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-T 707
            L  +  S   +  E  +       D       +D  RLLQI + +LSNA+ F+  GS T
Sbjct: 434 FLKSITTSFTMRAKEKLLIFNEDIKDTVPEFIHSDPTRLLQILNNLLSNALKFTQVGSIT 493

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVE 762
           + + A   + +     F V + G  I  +  +SVF +F         +  G GLGL+I +
Sbjct: 494 LYVSAIPMDSESVLLTFEVTDTGIGIEPNKFQSVFEKFTQANQDTTRKFGGSGLGLAISK 553

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + + L GGH+ ++S     +  +  +P K
Sbjct: 554 ALVELLGGHLVLTSEVGKGSKFSFSLPCK 582


>gi|330974369|gb|EGH74435.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 917

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|331000363|ref|ZP_08324044.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329572159|gb|EGG53824.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 894

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 145/316 (45%), Gaps = 15/316 (4%)

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA---QTMLT 541
              +R+Y+E   W     I+      + + +      S    + S+ P+       T+++
Sbjct: 295 ELLNRFYDEDRNW--LRNILNDRTIIKTATRNIELKGSSQNFQLSVYPVRQGLIDWTVVS 352

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             + T+ +  ++ L +     + A + K+ F+ H+S+E+R+P+  IIG T +  +     
Sbjct: 353 LFDETEQIAYQKNLADALTTAKNASQAKSDFLSHMSHEIRTPMNAIIGMTTIALSRIGDK 412

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              K    ++    +S  LL L+NDILD++ +++  + L+Y    L + ++ +   I  +
Sbjct: 413 --QKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYENFDLQETVHCIYNLIEPQ 470

Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----D 715
             E  +  ++I+ D +    V D  R+ Q+F  +++NA+ F+ +G  V ++ +      +
Sbjct: 471 AKEKGVSFEIITNDIRQECLVGDPLRVNQVFINVIANAVKFTPRGGKVTMRLSEKHTSPE 530

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +      + +NG  + ++    VF  F            G GLGL+I  + +NL GG + 
Sbjct: 531 HIHLRCVISDNGIGMKKEFLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLMGGSID 590

Query: 774 ISSSDEGVTTINCRIP 789
           + S +   +T    +P
Sbjct: 591 VQSEEGKGSTFTIDLP 606


>gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1187

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 13/344 (3%)

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           PD ++K      +++       +    + + +         +S+      + + + + E 
Sbjct: 407 PDRKLKF----LKAVAPNIGIAIHGAQNRKRMQELLEETQAQSEELQAQHSELENLNTEL 462

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           ++    L+  S+  L      L      L   N   + R  + + +K E L ++   K  
Sbjct: 463 EAHTQKLQT-SEEELRVQQEELQQTNLELEERNRMINAR-NQEIQQKAEELEQSTRYKTE 520

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+ELR+PL +I+  +  L  +   +LN  Q +    I  S   LLNL++++LDL+
Sbjct: 521 FMANMSHELRTPLNSILLLSRYLAENTEQNLNPDQVESASVILNSGNGLLNLIDELLDLS 580

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQI 690
            ++AG M+L Y  + +  +LN++K   A    E  +   + ++  ++     DR RL QI
Sbjct: 581 KIEAGKMELEYQQVSVEGVLNDIKSLFAPIAKEKKLDFIIKNELSEITQLETDRMRLEQI 640

Query: 691 FSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
              +LSNA+ F+SKG  V L   +         F+V + G  IP++  + VF+ F     
Sbjct: 641 LKNLLSNALKFTSKG-QVSLTLRQPELTGNLLQFAVTDTGIGIPQNKQQLVFDAFQQADG 699

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +R   G GLGLSI      L GG +S+SS     +     IP
Sbjct: 700 STKRKFGGTGLGLSISRELARLLGGEISLSSEPGKGSEFVLTIP 743


>gi|299535467|ref|ZP_07048789.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
 gi|298729228|gb|EFI69781.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
          Length = 511

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 165/395 (41%), Gaps = 34/395 (8%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +I  S+         +++T   ++E       +     I+++   + + G +G I + N
Sbjct: 145 RMIPLSHSINILARNLQDITTIREVEE------ERLKTLIENMGSSLMMIGREGNISIVN 198

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-IITSFDDERKSLQGTL- 518
             F             G  + ++     R        + F   +  +    R+ ++  + 
Sbjct: 199 RVFLE---------RFGMQLDDVQGKVFRTIGLPKSLEQFIDHVFLTEMPYRQQIKMEVQ 249

Query: 519 -ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            EL +  V    +I   + + +   + + D              L + ++I+  FV +VS
Sbjct: 250 QELYNKEVYGAPVIG-DHGRWLGVVIVMHDITE-----------LVRLEQIRKDFVANVS 297

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+T+I GF++ L              ++E I   S  L  L+ D+L+L+ ++   
Sbjct: 298 HELRTPITSIKGFSETLLDGAYKD-EKMLISFLEIIYKESNRLQMLIQDLLELSKIEQHG 356

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             +N   + L D+L    +  A ++ E N+  +V  +  +   + D  R++QI + +++N
Sbjct: 357 FTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIERDV-QVMGDANRIIQIVTNLITN 415

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
           A+ +S + +TV ++   +    I  +++ G  I +     VF RF        R   G G
Sbjct: 416 AITYSPENTTVSIRLKENETHGIIEIEDQGIGIEKHEIARVFERFYRVDRARSRNSGGTG 475

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL+IV+  +  H G + + S     T +   IP 
Sbjct: 476 LGLAIVKHLVEAHHGRIQVESEVGIGTKMIVMIPK 510


>gi|294054948|ref|YP_003548606.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614281|gb|ADE54436.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 638

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 129/284 (45%), Gaps = 12/284 (4%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++   EL     +  S++       +      T                  A+E K+SF+
Sbjct: 179 IKRARELQDGRRIALSMMEDAELARVELEAINTRLGEVIEQAKSAAHHADVANEAKSSFL 238

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+PL  +IGF D+L  ++   LN++Q +Y++ +  SS  L+ L+NDILD + +
Sbjct: 239 ATMSHEIRTPLNGVIGFIDMLSQTE---LNAEQQEYIQSLQMSSETLMALINDILDFSKI 295

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           ++G M+    +I L  LL E  Q    +  +  + +K+    ++   V  D  R+ QI  
Sbjct: 296 ESGRMEFETRSINLVRLLRETTQLFFGEAAKKGVELKLDFSEEVPRVVRGDETRIRQILI 355

Query: 693 KILSNAMDFSSKGST-VILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +L NA+ F+  GS  V +         +  +  F + ++G  + ED    +F+ F+   
Sbjct: 356 NLLGNAVKFTDTGSIAVAVHCYEPWTTGEVCEIEFEITDSGIGMTEDQVSKLFHPFLQAD 415

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R   G GLGL+I +      GG +  +S+    +    RI
Sbjct: 416 SSTTRKFGGTGLGLAICKRLSEAMGGRIWATSTVGEGSCFFVRI 459


>gi|229114563|ref|ZP_04243977.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
 gi|228668628|gb|EEL24056.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
          Length = 883

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 465 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 705 SNVGEGSTFTVYIP 718


>gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sp. D9]
 gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
 gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
          Length = 949

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDSRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|239993827|ref|ZP_04714351.1| sensor protein BarA [Alteromonas macleodii ATCC 27126]
          Length = 983

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 11/258 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     N+         L    +   KA  +K+ F+ ++S+E+R+PL  I+GF+   K  
Sbjct: 341 TNDLRNNMELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTPLNAILGFS---KEL 397

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL + Q + V  ++ ++  LL +VNDILD + ++AG +++N      N LL E+   
Sbjct: 398 NNASLPTDQQEQVRIVNTAADNLLTIVNDILDFSKIEAGKLQINNQPFSPNKLLEEMVTI 457

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +A   H   I             + D  R+ Q+ + +LSNA+ F+S G T+    +  + 
Sbjct: 458 MAKSSHSKRIEFVFDLHPLPEKLIGDVFRIKQVLNNLLSNALKFTSSG-TITFSVSGRSL 516

Query: 717 ----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
                +   +V++ G  I     K +FN F           +G GLGL I    + L  G
Sbjct: 517 PHGIHEVNITVEDTGIGISRQDRKKLFNAFSQVDDALNRNYQGTGLGLVISRELVRLMNG 576

Query: 771 HVSISSSDEGVTTINCRI 788
            +++ S     +T N  +
Sbjct: 577 DLTLKSVLGQGSTFNVSL 594


>gi|114800094|ref|YP_760221.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
 gi|114740268|gb|ABI78393.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
          Length = 944

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 129/285 (45%), Gaps = 15/285 (5%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKN 570
           G + L +  V+  +I+ +  +  ++   +    +  E      ALT++     +A+  K+
Sbjct: 143 GRVILHAGIVIFQTIVLVWISHKLVESFDRIGRMSEEILIKNEALTQRTREAEEANRAKS 202

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+E+R+P+  I+GF  L+  +    L+ KQ  +V  I+ +   LL L+NDILD 
Sbjct: 203 LFLASMSHEIRTPMNAILGFCHLIART---DLSPKQKDHVSKINDAGVSLLRLINDILDF 259

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689
           +  +AG + L      +   +      +        ++++      +    + D  R  Q
Sbjct: 260 SKNEAGKLTLEARPFDVRAAITNQINLVNIDADNKRVKLETRISPAVPRKIIGDELRFNQ 319

Query: 690 IFSKILSNAMDFSSKGSTVI---LKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
           +   +LSNA+ F+  G+ ++   + +++D    +  SV+++G  + E     +F  F   
Sbjct: 320 VVLNLLSNAVKFTENGTVIVRADVASSQDRDVVLELSVRDSGIGMDEQQQAKLFKSFSQA 379

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                R   G GLGL+I    +   GG++ + S     +T   RI
Sbjct: 380 DSSTTRQFGGTGLGLAICRQIVEQMGGNIRVESKIGEGSTFTFRI 424


>gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1]
          Length = 949

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQTDVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILHN--------LTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGMLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1155

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 162/341 (47%), Gaps = 12/341 (3%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G + +S  + R   + +E           +          ++  +  + ++       ++
Sbjct: 381 GNLGMSIESARYRQRLQEVLAETQQLNEELQVQQEELKTANEELEEQSRVLKESQAHLET 440

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            Q  LE  ++ + E         +T        + ++A++ L  + + L+++ + K+ F+
Sbjct: 441 QQAELEQTNEQLSE---------RTDALDRKNDELMQAQQELQARADELQRSSKYKSEFL 491

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PL + +    LL  +  G+L+++Q ++ E I ++   LLNL+NDILD+A V
Sbjct: 492 ANMSHELRTPLNSSLILAKLLAENGEGNLSAEQVKFAESIYSAGNDLLNLINDILDIAKV 551

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           +AG +++   T  L  L+  ++           +  +V  +  +  +   DRQRL QI  
Sbjct: 552 EAGKLEVRPETTQLERLVEGLRGMFLPLAEHKGLAFEVNVEPHVPVTLFTDRQRLEQILK 611

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQ 750
            +LSNA+ F+  G   +  + +     +F+V+++G  I  D  +++F  F  V  +   +
Sbjct: 612 NLLSNAIKFTDHGQVSLTISHQAGTGIVFAVRDSGIGIAADQQQAIFGAFHQVDGSSNRR 671

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLGLSI     +L GG +S+ S+    +  +  +P +
Sbjct: 672 YGGTGLGLSISRDLAHLLGGQISVDSNPGQGSVFSLTMPER 712


>gi|157162694|ref|YP_001460012.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
 gi|157068374|gb|ABV07629.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
          Length = 778

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 150/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG + 
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIK 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|262274565|ref|ZP_06052376.1| sensory box histidine kinase/response regulator [Grimontia hollisae
           CIP 101886]
 gi|262221128|gb|EEY72442.1| sensory box histidine kinase/response regulator [Grimontia hollisae
           CIP 101886]
          Length = 834

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 123/268 (45%), Gaps = 11/268 (4%)

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+   +     + V+   +   +L +  E   KA   K  F+ ++S+E+R+P+  I+G  
Sbjct: 419 PIDYREKDELGMLVSAFNQLSASLVDARERAIKAARAKQLFLANISHEIRTPMNGILGAA 478

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L++      ++++Q++Y+  I+ SS  L+ L+ND+LD + +++  +KL  +   L  L 
Sbjct: 479 SLMQDE---PMSARQAEYLSVIAHSSRGLMALINDLLDFSKMESNHLKLEEAPFDLEKLG 535

Query: 652 NEVKQSIATKMHEN-NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV- 708
             V   +   ++    +  +   +      F+ D  R+ Q+   ++SNA+ F+  G    
Sbjct: 536 KYVHDLMLPTINNKPQLAFEFRYEDTCPRYFLGDAHRIEQVMLNLVSNALKFTETGVVSF 595

Query: 709 ILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
            +   ++ G        V + G  I  +    +F+ F        R   G GLGL+I + 
Sbjct: 596 SISMRKEQGGYTGVCLRVSDTGVGIAPEKHNMIFDEFQQADTSTTRQFGGSGLGLAITKQ 655

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++L GG +S+ S     +  N  +P +
Sbjct: 656 LVDLMGGTISVESELGRGSVFNVFLPLQ 683


>gi|47679006|dbj|BAD20690.1| probable two-component sensor [Pseudomonas sp. BS]
          Length = 1211

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 160/389 (41%), Gaps = 23/389 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I++   +  ++  E   N  ++      D +   + V    GR+   N ++         
Sbjct: 548 IYLRRQIKARLKAERMLNDQLQFVETLTDCMPPPLYVRDLKGRMLSCNRSYLKSVGLSAE 607

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSI 530
           ++   T +R +        N     D     + +  D +  +S+        +  + + +
Sbjct: 608 QVLNKT-VRQLPKE-----NFESQPDFHRNYLQAMRDGQTIESVHAVQLQGREVWINHWV 661

Query: 531 IPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P  ++Q      +  ++++T+  +    L E       A   K SF+  +S+E+R+P+ 
Sbjct: 662 QPFEDSQGVTKGVICGWLDITEHRQLIEQLQEAKNLADDASRAKTSFLATMSHEIRTPMN 721

Query: 586 NIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +IG  +L LK +    ++      +E    S+  LL L+ DILD+A +++G + L+   
Sbjct: 722 AVIGILELALKRADSQPID---RASIEIAHTSANSLLELIGDILDIARIESGRLSLSPKR 778

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSS 703
             L +L+  V +       +  + + +  D  +    + D  R  QI S ++SNA+ F+ 
Sbjct: 779 ANLRELVESVARVFEGLARQKRLNLILDIDSSINCDVLVDALRFKQILSNLVSNAIKFTE 838

Query: 704 KGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGL 758
           +GS  + +     N   +    SV++ G  I     + +F  FV      Q   G GLGL
Sbjct: 839 EGSVKISISGLAVNASLLNVNLSVEDTGVGISPSDQQRLFRPFVQAQRNVQHTEGTGLGL 898

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR 787
            I  S   + GG V ++S+    T +   
Sbjct: 899 VICRSLCEMMGGRVGLTSTLGRGTRVELE 927



 Score = 44.9 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 55/155 (35%), Gaps = 10/155 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGI 231
           +  ++       + L++ +   + L D +   ++ RD  G +L  N SY K+     E +
Sbjct: 550 LRRQIKARLKAERMLNDQLQFVETLTDCMPPPLYVRDLKGRMLSCNRSYLKSVGLSAEQV 609

Query: 232 VFQKAIGESRKLFKEEIK------KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
           + +      ++ F+ +        + M     +E      +   E   N   +       
Sbjct: 610 LNKTVRQLPKENFESQPDFHRNYLQAMRDGQTIESVHAVQLQGREVWINHWVQPFEDSQG 669

Query: 286 F--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
              G     +D+++   + +QL     +  + + A
Sbjct: 670 VTKGVICGWLDITEHRQLIEQLQEAKNLADDASRA 704


>gi|298491151|ref|YP_003721328.1| histidine kinase ['Nostoc azollae' 0708]
 gi|298233069|gb|ADI64205.1| histidine kinase ['Nostoc azollae' 0708]
          Length = 613

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 147/302 (48%), Gaps = 8/302 (2%)

Query: 495 DGWDLFAAIITS---FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           D  D+ A +I +     D R+ +      L   ++  +I     A   L  +      + 
Sbjct: 157 DSRDVMAWLIIATAKPRDHREQIHPLQIQLRSQLITKTIQHFNTALAQLRQIQFWQ--QR 214

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            + L   N+ L + +++KN F+ + S+E+R+PL++IIGFT LL          +  +Y+ 
Sbjct: 215 CQQLANFNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYEPERQRHQEYLH 274

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S   LL+L+NDILDL+ ++A  +++ +  + ++ L   V   +  K     +++++
Sbjct: 275 IIQSSGKHLLDLINDILDLSKIEANQLEVQWEIVEVSTLCRNVLALVKEKAANKGLKLRL 334

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +  + + V D  RL Q+   +L NA+ F++ GS V L+ +  +    FSV + G  I 
Sbjct: 335 EIENDVTNLVVDPLRLKQMLLNLLFNAVKFTNLGS-VGLRVSIKDLYLRFSVWDTGIGIS 393

Query: 732 EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F  +    N   G   G GLGL + +    +HGG++ + S+ +  +     +P
Sbjct: 394 QENQTRLFRPYSQIINPGAGSNEGSGLGLVVTQQLAEIHGGYLELESAIDQGSCFTIVLP 453

Query: 790 SK 791
            K
Sbjct: 454 LK 455


>gi|206967994|ref|ZP_03228950.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
 gi|206736914|gb|EDZ54061.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
          Length = 896

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|212543487|ref|XP_002151898.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
 gi|210066805|gb|EEA20898.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
          Length = 1313

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA  +A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 734 REAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHNLAN 791

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 792 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLNLAYQVDSSVP 851

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK------AARDNGDFIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G   + +        ARD   F FSV + G  I
Sbjct: 852 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSEREQCARDEYAFEFSVSDTGIGI 911

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 912 EEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 970


>gi|77460196|ref|YP_349703.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384199|gb|ABA75712.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 1214

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 148/387 (38%), Gaps = 12/387 (3%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEE 471
            +M   +  +   E   N  ++  G  ++     + V    G ++  N ++ ++     E
Sbjct: 560 AYMRRQIKQRKAAERALNDQLEFMGSLVNGTPHPIYVRDRQGLLQSCNDSYLQAFNARRE 619

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           + +        +         ++D   + A       D    +      +   +L Y   
Sbjct: 620 DVIGKSVMQGALNNAFEAQTYQADYQRVMAEGRPLVLDRPLQIGNRQLTIYHWILPYRDS 679

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                  +  ++++++       L    E    A+  K++F+  +S+E+R+P+  +IG  
Sbjct: 680 SGEVQGIIGGWIDISERRELLDELRAAKERADDANRAKSTFLATMSHEIRTPMNAVIGML 739

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +L       +        +E    S+  LL L+ DILD+A +++G + L    I L D +
Sbjct: 740 ELTLKRMDQTHPD--RSGIETAYHSAKDLLGLIGDILDIARIESGRLSLTPERINLIDTV 797

Query: 652 NEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-V 708
             V +       +  + + V             D  R  Q+ S ++SNA+ F+  G   +
Sbjct: 798 GSVVRIFEGLARQKQLSLAVSVSPPELNVDVHLDPLRFKQVLSNLISNAIKFTEAGHIRI 857

Query: 709 ILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
            L     +         +V+++G  I       +F  F   A+ GQR   G GLGL I  
Sbjct: 858 TLDVLPTDDPERSMVQLTVQDSGIGITTQDQSRLFEPFAQAANGGQRTFSGAGLGLVISR 917

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
           +   + GG + +SS     T ++  +P
Sbjct: 918 NLCEMMGGKLRLSSLPGIGTQVSVSLP 944



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L++ +     L +     ++ RD+ G +   N SY +         
Sbjct: 562 MRRQIKQRKAAERALNDQLEFMGSLVNGTPHPIYVRDRQGLLQSCNDSYLQ---AFNARR 618

Query: 234 QKAIGESRKLFK-EEIKKRMISSSALEKNFCETVSTLEH-----GNNKS---YKIVRVLN 284
           +  IG+S          +     +  ++   E    +       GN +    + I+   +
Sbjct: 619 EDVIGKSVMQGALNNAFEAQTYQADYQRVMAEGRPLVLDRPLQIGNRQLTIYHWILPYRD 678

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   + D+L    E   +   A + F
Sbjct: 679 SSGEVQGIIGGWIDISERRELLDELRAAKERADDANRAKSTF 720


>gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71]
          Length = 933

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPCVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|217969790|ref|YP_002355024.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T]
 gi|217507117|gb|ACK54128.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T]
          Length = 767

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 118/260 (45%), Gaps = 16/260 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      AL     A   AD +K++F+  +S+ELR+PL +IIGFT +L     G LN +Q
Sbjct: 499 ELAETNCALLAAKHAAESADRLKSAFLATMSHELRTPLNSIIGFTGILLQRLAGPLNDEQ 558

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+ +  +  S+  LL L+ND+LD++ ++AG +++ +    +   +++V   +        
Sbjct: 559 SRQLGMVQDSARHLLALINDVLDISKIEAGELRIAHEAFDIAASIDKVAAIVRPLAERKR 618

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------- 718
           + ++V           D +R+ QI   +L+NA+ F+  G  V +    ++          
Sbjct: 619 LCLQVERMTGPLVMTGDMRRVEQIALNLLTNAIKFTEHG-RVTVTLELESQHAADAGPER 677

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
                    V + G  I  +  + +F  F         Q  G GLGL+I +  + L GG 
Sbjct: 678 AGRPAVRLCVADTGMGIRHEDLELLFQPFRQIDSTLSRQHEGTGLGLTICKRLVALMGGE 737

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S     +     +P +
Sbjct: 738 ITVDSEPGRGSRFTVTLPYE 757


>gi|254391838|ref|ZP_05007033.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294815467|ref|ZP_06774110.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|197705520|gb|EDY51332.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294328066|gb|EFG09709.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 1804

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 24/279 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1323 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1382

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L+ KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 1383 NPETNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEA 1442

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----- 710
            +      E  +   V    +L  +   D QRLLQ+   +LSNA+ F+  GS  ++     
Sbjct: 1443 TFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSG 1502

Query: 711  ---------------KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
                                +G  I FSV + G  I     + +F  F         +  
Sbjct: 1503 ADVPQSIREQLLEVGSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYG 1562

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGLSI      L GG +  +S     +T    +P +
Sbjct: 1563 GTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLR 1601


>gi|144898313|emb|CAM75177.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 935

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 12/295 (4%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           + S  DERKS    +++    V   S++                       L +      
Sbjct: 237 LESEIDERKSRYQAIQIALAVVTVLSVLTFAVMVAKQILAGSALLQAMVEDLRQAKTGAD 296

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A++ K+ F+  +S+E+R+P+  IIG T LL  ++   L   Q+ +   +  S+  LL +
Sbjct: 297 AANQAKSEFLATMSHEIRTPMNGIIGMTSLLLDTR---LERDQAHFANTVRVSAESLLTI 353

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVA 682
           +NDILD + ++AG ++   ++  L  L+  V   +  ++ + N+ +   I     G F  
Sbjct: 354 INDILDFSKMEAGKLEFEETSFELVPLIEGVVDILGPRLRDKNLDLSCFIPPAAHGVFRG 413

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKS 737
           D  RL Q+   +  NA+ F+++G  V L+   D+ D       F++ + G  IPE     
Sbjct: 414 DAGRLRQVLLNLAGNAVKFTNQGGVV-LEVMVDDSDPARALLRFTITDTGIGIPEAAKGK 472

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F  F        RR  G GLGL+I +  + + GG +   SS+   +T   ++P 
Sbjct: 473 LFGTFTQAEASTARRFGGSGLGLAICKRIVTMMGGDIGFDSSEGKGSTFWFQVPL 527


>gi|91227847|ref|ZP_01262020.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
 gi|91188357|gb|EAS74653.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
          Length = 932

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q  Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQMDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  V ++    +GD     F V++ G
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CR 787
             
Sbjct: 512 FT 513


>gi|83772706|dbj|BAE62834.1| unnamed protein product [Aspergillus oryzae]
          Length = 1362

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 754 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 811

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 812 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 871

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
            +V  D  RL QI   ++ NA+ F+  G  V L   + + +        F FSV + G  
Sbjct: 872 DYVTGDPFRLRQIILNLVGNAIKFTEHGE-VKLTIRKSDREQCAANEYAFEFSVSDTGIG 930

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 931 IEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 990


>gi|258516163|ref|YP_003192385.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779868|gb|ACV63762.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 920

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 14/268 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + Q   +     +  +   AL EK   L +    K+ F+ ++S+ELR+PL +++    +L
Sbjct: 475 DEQYKTSHQRTVELEKVRAALEEKAGQLEQTSRYKSEFLSNISHELRTPLNSLLILAQML 534

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +   +L  KQ +Y E I +S   LL L+NDILDL+ V++G M +    + L D+   +
Sbjct: 535 AENDKSNLTPKQVEYAETILSSGQDLLVLINDILDLSKVESGKMDVCPRAVKLKDIQKFL 594

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++      ++  I   ++ D  L  +  AD QRLLQI   +LSNA  F+ +G  V+L   
Sbjct: 595 ERQYLPVANQKTIVFTILIDSDLPETIFADEQRLLQILKNLLSNAFKFTEQG-CVLLSIR 653

Query: 714 RDNGDFI----------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
           +                F+V + G  I ++    +F  F         +  G GLGLSI 
Sbjct: 654 KVQKKLTDKQEFPTMLSFAVSDTGIGISQEKHIMIFEEFRQADGTTSRKYGGSGLGLSIS 713

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
                L GG + + S +   +T    +P
Sbjct: 714 NKIAMLLGGFIELESEEGKGSTFTLYLP 741


>gi|254285731|ref|ZP_04960694.1| sensor protein TorS [Vibrio cholerae AM-19226]
 gi|150424228|gb|EDN16166.1| sensor protein TorS [Vibrio cholerae AM-19226]
          Length = 984

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +  +   +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTCQLSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   +L + Q  YV+ I+ S   LL ++ND+LD + ++AG ++++++   L  L+ 
Sbjct: 494 LLQDT---TLTATQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    D  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRV 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           + A D     F+V+++G  I E+   ++F+ F      R +  G GLGL+I    +   G
Sbjct: 611 RLAPDGQGIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMG 670

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + ++S     +     +P 
Sbjct: 671 GELQLASQLGQGSCFGFTLPL 691


>gi|144898726|emb|CAM75590.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 710

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 11/289 (3%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            I++  D    LQ   + L + V+E         +T      +    R +  L +     
Sbjct: 278 FISTIRDPYVRLQQAQDELENRVVE---------RTRELHDALISLERQQHDLEQAKLGA 328

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A++ K+ F+  +S+ELR+PL  +IGFT LL+T + G LN KQ+  +++I      LL 
Sbjct: 329 DRANQAKSEFLSSMSHELRTPLNAVIGFTQLLRTERPGPLNEKQAGQLDHILRGGQHLLE 388

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N++LDLA ++ G + L+   I    ++NE          E  + I     G +     
Sbjct: 389 LINEVLDLARIETGKLSLSVEVIDPVVVMNECLAFGRAYARERGVEIGEWQGGPVLPISV 448

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNR 741
           D  R  QI   ++SNA+ ++     V L A     G   FS+ + G  I  D    +F  
Sbjct: 449 DYTRFKQILLNLISNAIKYNRADGRVTLTAQPWGTGMMRFSIADTGPGIARDKQAHLFEP 508

Query: 742 FVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F    A      G G+GL+I +  +    G +   S +   +      P
Sbjct: 509 FNRLGAESRDVEGTGIGLTITKRLVQAMNGLIGFHSQEGQGSVFWIDFP 557


>gi|302185510|ref|ZP_07262183.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae 642]
          Length = 917

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 387 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|284054567|ref|ZP_06384777.1| two-component hybrid sensor and regulator histidine kinase
           [Arthrospira platensis str. Paraca]
          Length = 812

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 120/251 (47%), Gaps = 16/251 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ---SQYV 610
            L +  E    A++ K+ F+ H+S+ELR+PL  I+GFT L+        N        ++
Sbjct: 429 ELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQISLENNHNLNNFRDHL 488

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+ND+LD++ ++AG + LN +   L  LL+ +++  + +     +++ 
Sbjct: 489 YIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLEEMFSIRAASEGLKLI 548

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------- 718
            +    L  ++ +D Q+L Q+   ++ NA+ F+  GS  +     D  +           
Sbjct: 549 FVRSPNLPRYINSDEQKLRQVLINLIGNAVKFTENGSVTLHSQVIDPPNQIDNPQPPPMV 608

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
             F+V++ G  I       +F  F+      +  +G GLGL I + F+ L GG +S+SS+
Sbjct: 609 LQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQQGTGLGLPISQQFVQLMGGDISVSST 668

Query: 778 DEGVTTINCRI 788
               +    +I
Sbjct: 669 LGVGSVFKFKI 679


>gi|153870040|ref|ZP_01999522.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073493|gb|EDN70477.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1048

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 162/389 (41%), Gaps = 44/389 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
             + TL ++Q + ++ +   + +          N A  S  + +    +       + + 
Sbjct: 497 ATFKTLTELQRDFLNQVMPNIGI--------AINTA-ESRARMQTLLQTSQKQTEELQSQ 547

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                ++S+        +   ++E +     LE     V + +++ L   QT        
Sbjct: 548 SEELQSQSEELQTQQEELRQINEELEERTRALERQKQDVQQKNVL-LEQTQT-------- 598

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R ++A+  K + L  A + K+ F+ ++S+ELR+PL +I+    +L+ +K  +L  +Q
Sbjct: 599 EMERTKKAIENKAQELELASKYKSEFLANMSHELRTPLNSILILAQMLEENKAANLTEQQ 658

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y + I  + + LL L+N+ILDL+ V+AG + ++   IVL D++  VKQ          
Sbjct: 659 VEYAQTIFNAGSDLLLLINEILDLSKVEAGKIDVHLENIVLADMVMMVKQKFNHVAETKG 718

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---------------L 710
           +   V  +  L  +   D  RL QI + +LSNA  F+++G   +               +
Sbjct: 719 VLFLVTIEEDLPKAMKTDGHRLQQIINNLLSNAFKFTNEGEVKLTIQRPTERIPLLLTGI 778

Query: 711 KAARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
              ++              SV + G  IP+D    +F  F            G GLGLSI
Sbjct: 779 SLFKEGKQEFLEPDKSIAISVSDTGVGIPKDKQLMIFEAFQQADGTTSRSYGGTGLGLSI 838

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
                 L  G + + S +   +T    +P
Sbjct: 839 SRQLARLLCGDIQLQSEEGKGSTFTFYVP 867


>gi|22297980|ref|NP_681227.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
 gi|22294158|dbj|BAC07989.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
          Length = 652

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 152/392 (38%), Gaps = 28/392 (7%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F ++  ++   E +    ++ +   +D L    ++G  +   D RI L NP  +
Sbjct: 254 GELITSFNDMAERLASYEAQNIEELQAEKAKLDTLVSTIADGAILLDTDMRIILVNPTAQ 313

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+  E   +     +    A               A+   S   E +         S  
Sbjct: 314 RLFNWEGMNVIGQNALDCFPAPVCEKLTCPLYK---ASRGESEGGEFRVTLQEPSSRSVR 370

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +L  +++ +   +     + + D  R             + +E K   + +VS+ELR+PL
Sbjct: 371 ILLTTVMDVQREKPKGIAITIQDITR-----------EVELNEAKAQLISNVSHELRTPL 419

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI    + ++         +Q +++E  +  +  L  LVND LD++ +++G     + +
Sbjct: 420 FNIKSIIETIQEYGSSLSEKEQQEFLETANHETDRLTRLVNDFLDISRLESGR-PYQFGS 478

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + +  +++++ ++        +I +    +  L     +   L+   + ++ NA+ F+ +
Sbjct: 479 VQMAQVIDQIMRTYQLNAANKSITLTAEVENPLPPVWGNYDLLIGALTNLVGNALKFTPE 538

Query: 705 GSTVILKAAR-------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGL 756
              V ++A         +       V + G  I  +    VF RF    +R     G GL
Sbjct: 539 NGRVTIRAYVWHPSSDPEQERVRIEVADTGMGIAPEDQPRVFERFFRVENRVHTLEGTGL 598

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+IV+  I+ H   + + S     +T    +
Sbjct: 599 GLAIVQDIIHKHNTQIHLISELGVGSTFWFDL 630



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 57/180 (31%), Gaps = 16/180 (8%)

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
            NF + ++    G     +++   N   E   + +      +  +      ++  +    
Sbjct: 239 GNFKQRINLPFGGE--LGELITSFNDMAERLASYEAQNIEELQAEKAKLDTLVSTIADGA 296

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
            + D +  +   N +   L+  +   +    + D     +      P     +   E   
Sbjct: 297 ILLDTDMRIILVNPTAQRLFNWEGMNVIGQNALDCFPAPVCEKLTCPLYKASRGESE--- 353

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNTLV 433
                    + T   P+ +++ +++T+          G     +++T +V+L      L+
Sbjct: 354 -----GGEFRVTLQEPSSRSVRILLTTVMDVQREKPKGIAITIQDITREVELNEAKAQLI 408


>gi|261212467|ref|ZP_05926752.1| sensor protein TorS [Vibrio sp. RC341]
 gi|260838398|gb|EEX65054.1| sensor protein TorS [Vibrio sp. RC341]
          Length = 969

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 135/280 (48%), Gaps = 9/280 (3%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK---NEALRKADEIKNSFVQH 575
           E+L+   L+     L       T      + +  + +           +A+  K++F+  
Sbjct: 417 EVLAKRELQQHKEHLEELVEQRTHQLSDINHKLNQEVLNHAKARYQAEQANRAKSAFLAT 476

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  ++G   LL+ +   SL S Q  YV+ I+ S   LL ++ND+LD + ++A
Sbjct: 477 MSHEIRTPMNGVLGTARLLQET---SLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEA 533

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694
           G ++++ S   L  L+ E  + + ++  E  I +    D  +  +   D  R+ Q+ + +
Sbjct: 534 GHLEIHQSHFDLYRLVRETHELMQSRALEKGITLSYQIDENVSQYWQGDEIRIGQVLNNL 593

Query: 695 LSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRR 752
           + N + F+ +G   + ++    +G   F+V+++G  I E    S+F+ F    A R ++ 
Sbjct: 594 VGNGIKFTEQGQVCIRVRFDTQSGGLCFAVEDSGIGIAEQDQVSLFDAFTQAEAGRRKQG 653

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G GLGL+I    +   GG + +SS     +     +P ++
Sbjct: 654 GTGLGLAISRKLVEAMGGELQLSSQLGQGSCFYFTLPLQQ 693


>gi|150008002|ref|YP_001302745.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936426|gb|ABR43123.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 300

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 133/278 (47%), Gaps = 10/278 (3%)

Query: 517 TLELLSDSVLEYSIIPL----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
             E  +  V   +I+ L    P+       + + + +  +R        +++AD++KN+F
Sbjct: 7   EYEKPNGEVRIVNIVRLLITNPDPGASPLLLVMLNDITEQRQDQLALMKVQEADKMKNAF 66

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+GF  L+  +   S   +Q +Y   I+ +  +LL L+NDILDL+ 
Sbjct: 67  IANMSHEIRTPLNAIVGFAHLVTETTNAS---EQREYFSIINKNCDLLLKLINDILDLSK 123

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +++G +  N S + L D+  E     + KM  +   +             D  R+ Q+  
Sbjct: 124 IESGRLNYNVSEVELRDICQEAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLL 183

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +LSNA+ F+SKG  + L    ++     SV + G  I E+  +SVF RFV        +
Sbjct: 184 NLLSNAIKFTSKG-FISLFYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLDDF--YQ 240

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           G GLGL I +  +   GG + + S     +T    +P 
Sbjct: 241 GAGLGLPICKMIVEQLGGEIGVRSELGKGSTFWFTLPL 278


>gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1152

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 3/245 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L EKN AL + D++K+ F+ + S+ELR+PL  IIG  + L     G L+      
Sbjct: 429 RLSVELQEKNIALSRMDQLKDEFLANTSHELRTPLAGIIGIAESLLAGSGGQLSELARHN 488

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  + +SS  L +L+NDILD   +    + LN   + +  + + V   +        + +
Sbjct: 489 LHMVVSSSRRLTSLINDILDFTRLRNRDLPLNLKAVDVKAVADVVLSLLTPLAEAKQLTL 548

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               D  L    AD  R+ QIF  ++ NA+ FS +G  +++   + NG    SV++ G  
Sbjct: 549 VNQIDAALPCTHADEDRIQQIFYNLIGNAIKFSDQGE-IVVTGQQVNGWLELSVRDQGIG 607

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D  K++F  F           +G GLGL+I  + + LHGG +S+ S     +T    
Sbjct: 608 IDADSLKTIFEPFEQADSGAGRASQGAGLGLAITRNLVQLHGGDLSVESQLGQGSTFCFT 667

Query: 788 IPSKE 792
           +P  E
Sbjct: 668 LPVSE 672


>gi|182677673|ref|YP_001831819.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633556|gb|ACB94330.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 728

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 175/377 (46%), Gaps = 14/377 (3%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +Y + V+     +D  ++GVAV   +GRI   N +  +L+  +   +        IA   
Sbjct: 347 RYESEVRELHAILDTATDGVAVLDAEGRILTLNRSGEALFGYDRGEVLSQPFTMLIAPAS 406

Query: 488 SRYYNESDGWDLFAAIITSFDDERK-----SLQGTLEL---LSDSVLEYSIIPLPNAQTM 539
            R   +         +++  +D R+        GT+ +   L    L  +   +P     
Sbjct: 407 RRRAMDYFEGVKTGGVLSLLNDGREIFGLARQGGTIPIFMTLGRIGLFVTAETMPEQGVF 466

Query: 540 LTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             +     +++   + ER L    +   +A  +K+ F+  VS+E+R+PL  I+GFT+++ 
Sbjct: 467 EKYCVLLRDMSHWKKIERELEAARKEAERASTLKSDFLAKVSHEIRTPLNAILGFTEVIM 526

Query: 596 TSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             + G + N +   Y++ I  S T++++LVND+LDL+ ++AG M L++  +  N ++ + 
Sbjct: 527 DERFGPIGNERYKDYLKDIHMSGTLVMSLVNDLLDLSKIEAGKMDLDFVAVDTNQIIADC 586

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA- 713
              +  + +   I +++     L   +AD + L QI   +LSNA+ F+  G  V++    
Sbjct: 587 VSLMQPQANREGILVRLALAPALPPLLADERSLRQIVLNLLSNAVKFTEPGGQVMVATKL 646

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            ++G  +  +++ G+ + E+        F   +     +G GLGL + ++ +  +    S
Sbjct: 647 MEDGKTLIRIRDTGAGMSEEEIGIALEPFRQLSTSRSNQGTGLGLPLTKALVEANRASFS 706

Query: 774 ISSSDEGVTTINCRIPS 790
           ISS  +  T +    PS
Sbjct: 707 ISSKKQEGTVVEILFPS 723



 Score = 41.1 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 23/176 (13%)

Query: 249 KKRMISSSALEKNFCETVSTLEHGNN-----KSYKIVRVLNSFGEAGIAIDVSKEITVND 303
            +      AL     ET   ++ G       ++ +  +       A      ++      
Sbjct: 291 PQEEEEGQALSPVLAETRGVIDAGEPVSAFPRTDETAQGPVEGERAARQALEARMHRYES 350

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           ++   + IL   T  +A+ D    +   NRS   L+  D   + + P    +        
Sbjct: 351 EVRELHAILDTATDGVAVLDAEGRILTLNRSGEALFGYDRGEVLSQPFTMLI-------- 402

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
                      +      ++  +T      L +G+ +  +     +GGTI +F  L
Sbjct: 403 -------APASRRRAMDYFEGVKTGGVLSLLNDGREIFGLAR---QGGTIPIFMTL 448


>gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1829

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 30/321 (9%)

Query: 494  SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             +  +         ++ +K+LQ +   L +         L   Q     V  T+   A +
Sbjct: 1292 QELTEQLRERSAELENRQKALQASNAELEEKA------ELLAQQNRDIEVKNTEIEEARQ 1345

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++ E I
Sbjct: 1346 VLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADSNLTPKQVEFAETI 1405

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V  
Sbjct: 1406 HGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRV 1465

Query: 674  DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST----------VILKAAR-------- 714
              +L  +   D QRLLQ+   +LSNA+ F+  G+           V +            
Sbjct: 1466 SPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPVAIREQLLEAGSL 1525

Query: 715  ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               D G   FSV + G  I     + +F  F         +  G GLGLSI      L G
Sbjct: 1526 RDADAGLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLG 1585

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G +  +S     +T    +P 
Sbjct: 1586 GEIHAASEPGRGSTFTLYLPL 1606


>gi|37521062|ref|NP_924439.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212058|dbj|BAC89434.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 602

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 119/562 (21%), Positives = 199/562 (35%), Gaps = 96/562 (17%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             ++  +   IA  D+   + F NR+   L                L ++L     LPE 
Sbjct: 55  RSLVQYVPDTIAAVDRRGCILFANRALSGLC-------LERMIGQNLGDYL-----LPEH 102

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVTSNPRGG------TIWMFENLT 420
                  E    V  + E        P+  G+      +  P          I +F ++T
Sbjct: 103 AERMG--EVFARVTATGEAESCEVAAPDDHGRVFWYRASVGPVAHQGQLTSLIAVFSDIT 160

Query: 421 VQVDLE---------------------TKYNTLVK---VQGETIDH-------------- 442
            +   E                      ++  L +   V   ++D               
Sbjct: 161 ERKRSEEAFAALLQREQGLHRAIEHSERRHRFLARASVVLSSSLDAETTFADLARLVVPQ 220

Query: 443 LSEGVAV--FGPDGRIK-LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +++G AV    PDG ++ L      +       RL         AA  S     +    L
Sbjct: 221 VADGFAVDLVEPDGALRCLVLARADAEKVGWARRLREREPSDPAAAWGSAQVIRTGCPQL 280

Query: 500 FAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPL-PNAQTMLTFVNV------------ 545
           ++A   +           LELL   S     ++PL    QT+ T   V            
Sbjct: 281 YSAFSEALLSACAGSPEHLELLRGGSYRSAMVVPLVARGQTLGTLTFVLAESDRRYGPSD 340

Query: 546 --------------TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                          D+ R   A   +      A+  K+ F+  VS+ELR+PL +I+GFT
Sbjct: 341 LSLAEDLAGRAALAFDNARLYAAEQRERNRAEVANRAKDEFLATVSHELRTPLNSILGFT 400

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+         + +  ++ I  ++     L  D+LD++ +  G +KL    + +N L+
Sbjct: 401 QLLRRHAGDP--ERLAVALDAIERNAKAQARLTEDLLDVSRIITGKLKLTIQPVRVNALV 458

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +   +++ T     NI +  I      +  AD  RL Q+   +LSNA+ F+  G  + + 
Sbjct: 459 DAAIETMRTAAEAKNIALSAIYPEAPCTLQADSNRLQQVIWNLLSNAIKFTPVGGRIRVS 518

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
             R  G    +V ++G  I  +    VF+RF        R   G+GLGL+IV   + LHG
Sbjct: 519 VERRAGQVHIAVADSGMGIAAEFLPFVFDRFRQADSSSTRTFGGLGLGLAIVRHLVELHG 578

Query: 770 GHVSISSS-DEGVTTINCRIPS 790
           G V   S+      T    +P 
Sbjct: 579 GSVEAHSAGPNQGATFVVSLPL 600


>gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
 gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
          Length = 711

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 6/244 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L E  E    A++ K+ F+  +S+E+R+P+  IIG  D+L  +    L  +Q  Y
Sbjct: 190 RLITRLEEAREVAVIANDAKSDFLAKMSHEIRTPMNGIIGMADMLSET---DLTPEQDSY 246

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +  S   LL ++NDILD + ++AG + L      L +++ +V Q +A       + +
Sbjct: 247 VSTMVRSGDALLTIINDILDFSKIEAGKLTLASEPYRLREIVEDVTQLLAPLAARKGLML 306

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
                  L   +  D  RL QI   I  NA+ F+ +G   +  +A   G  +  V ++G 
Sbjct: 307 YSDVAPDLPEIMLGDAGRLRQILVNIAGNAVKFTLEGHVALRASAGGPGQIVIRVHDSGV 366

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D    VF  F    +   R   G GLGL++    + L GG +++ S +   T  + 
Sbjct: 367 GIPSDQQDKVFTAFEQVDNTATRSFGGTGLGLAVSRQLVTLMGGTLTLHSREGEGTRFDI 426

Query: 787 RIPS 790
            +P 
Sbjct: 427 TLPL 430


>gi|118580297|ref|YP_901547.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503007|gb|ABK99489.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 604

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/423 (20%), Positives = 164/423 (38%), Gaps = 47/423 (11%)

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +   I +   +        +     ++  +  D    G      DG I+ +N     L  
Sbjct: 35  QVYQIELEMQVEELRQARDEEAMAREMYADLYDFAPVGYVTLDRDGIIRNANLTGSVLLG 94

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              ++L  G  +    A  SR        D    + TS       +    E + +  ++ 
Sbjct: 95  VVRSQL-IGQRLGVFVAVVSR----PAFADFLEKVFTSPTKVACEVSLMKEGVPELFVQI 149

Query: 529 SIIPLPNAQTMLTF-VNVTDSVRAERALTE------------------------------ 557
             + + + +      +++T+  RAE  L                                
Sbjct: 150 EGVAVASGEECRIGLIDITEHKRAEEVLWMAKEATEAAILAKETAKALRLEKEISESLRR 209

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + EA   A   K+ F+ ++S+ELR+P+T ++G   L    +L         Y+    +S+
Sbjct: 210 EKEAAESATRAKDQFLANMSHELRTPMTGVLGMLQLALEEELAPT---LRNYLGTAHSSA 266

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             LL ++NDILD+  ++AG + +          +      I  ++    + I + +++  
Sbjct: 267 NSLLQILNDILDMTKIEAGKIIIEEMPFSPRRCVTGAVDIITPEVRRKGLDIAISVAEEV 326

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIP 731
               V D+ RL Q+   +++NA+ F+++G   V + A   N D    + F+V + G  IP
Sbjct: 327 PDKLVGDQMRLRQVLINLIANAVKFTNEGKVAVQVTAGGTNSDGKREYTFAVTDTGIGIP 386

Query: 732 EDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED    +F+ F  V  +H     G GLGL+I +  + L GG +   S +   +T    I 
Sbjct: 387 EDKKDLLFHVFSQVDASHTRTYGGTGLGLAICKELVELMGGMIDFDSKEGVGSTFYFTIS 446

Query: 790 SKE 792
            +E
Sbjct: 447 LRE 449


>gi|303258394|ref|ZP_07344397.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47]
 gi|302858840|gb|EFL81928.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47]
          Length = 863

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 147/316 (46%), Gaps = 15/316 (4%)

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA---QTMLT 541
              +R+Y+E   W     I+      + + +      S    + S+ P+       T+++
Sbjct: 263 ELLNRFYDEDRNW--LRNILNDRTIIKTATRNIELKGSSQTFQLSVYPVRQGLIDWTVVS 320

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             + T+ +  +R L +     + A + K+ F+ H+S+E+R+P+  IIG T +  +    S
Sbjct: 321 LFDETEQIAYQRNLADALTTAKNASQAKSDFLSHMSHEIRTPMNAIIGMTTIALSRI--S 378

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              K    ++    +S  LL L+NDILD++ +++  + L+Y    L + ++ +   I  +
Sbjct: 379 DKQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYEKFDLQETVHSIYNLIEPQ 438

Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----D 715
             E  +  ++++ D      V D+ R+ Q+F  +++NA+ F+ +G  V +K +      +
Sbjct: 439 AKEKGVSFEIVTNDVNQECLVGDQLRVNQVFINVIANAVKFTPRGGKVTMKLSEKQTSPE 498

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +      + +NG  + +D    VF  F            G GLGL+I  + +NL GG++ 
Sbjct: 499 HIHLRCIISDNGIGMKKDFLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLMGGNID 558

Query: 774 ISSSDEGVTTINCRIP 789
           + S +   +T    +P
Sbjct: 559 VQSEEGKGSTFTIDLP 574


>gi|212543489|ref|XP_002151899.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
 gi|210066806|gb|EEA20899.1| two-component osmosensing histidine kinase (Bos1), putative
           [Penicillium marneffei ATCC 18224]
          Length = 1319

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA  +A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 734 REAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHNLAN 791

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 792 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLNLAYQVDSSVP 851

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK------AARDNGDFIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G   + +        ARD   F FSV + G  I
Sbjct: 852 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSEREQCARDEYAFEFSVSDTGIGI 911

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 912 EEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 970


>gi|163794299|ref|ZP_02188271.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159180467|gb|EDP64988.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 637

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 127/635 (20%), Positives = 237/635 (37%), Gaps = 63/635 (9%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
                D     V   D    ++  N  +++     G    +          E  ++    
Sbjct: 27  LLFALDHTQIAVAVWDTEDRLVHTNARFRELFAHTGPFDDR---PDFATITERTRRFFRD 83

Query: 255 SSALEKNFCETVSTLEHG---------NNKSYKIVRVLNSFGEA-GIAIDVSKEITVNDQ 304
              +E    E +   + G          N+  +   +    G A  I  D+S+E +V   
Sbjct: 84  DPVIEAAADERLHRRKRGNPTGEFLSVENRVIRFHDIQTPDGGAVTIYEDISRERSVEAT 143

Query: 305 LTHTYEILHNLTVAI-----------AIFDQNRYLQFH---NRSFVELWEIDLAFLATNP 350
           L+   + L     AI             +  +R L+     + +F+  W   LA L   P
Sbjct: 144 LSALAKTL---PGAIFELRRGAGDIACTYMSDRILELTGTPSEAFIADWGCALADLLAQP 200

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
                 E L ++ +  ++LN +          +          L +G TL          
Sbjct: 201 DTHRFTEGLNTSAEQLDELNIRLPLARPAGSTRWLRVRAAARRLTDGTTLWS-------- 252

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
               +F + T+ V+         +   + ID  S+ V      G+I   +  F  +    
Sbjct: 253 ---GIFTDATLSVESTAALAQSERRFRDIIDIASDWVWETNAAGQITFVSDRFVEIS--- 306

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL----SDSVL 526
                 G     I     R     D  D     +     ER+ + G    +     D  +
Sbjct: 307 ------GIPTDRIVGRTRRELPFYDWDDPGLQALEEDLRERRPIHGRRIRIGTPSGDRQV 360

Query: 527 EYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                P+            T  +VT      + L +     + A+  K+ F+ ++S++LR
Sbjct: 361 SLRGRPILGDDGTFQGYRGTGTDVTREHEYVQRLHDAMVEAQAANRAKSRFLANMSHDLR 420

Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL  I+GF+++++    G + + + ++Y   I  S+  LL L++D+LDLA +++G +++
Sbjct: 421 TPLNAIMGFSEIMQAEVFGPVGHPRYAEYSRDIRTSAVHLLELIDDLLDLARIESGRIEM 480

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               +V+ D+++E    +A +     + + V          +D + + QI   +L+NA  
Sbjct: 481 VKEPLVIRDIVDEAIMLVAPRCEARGVSLTVTGAADAPVVHSDGRAVKQILVNLLTNASK 540

Query: 701 FSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           F+ +G ++++    D+ G+   SV ++G  IP  M   V   FV  +    R   GVGLG
Sbjct: 541 FTERGGSIVVDIKPDSTGNVWVSVCDDGCGIPTAMIDEVTKPFVQASETASRPRDGVGLG 600

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L+IV S     G    I S     TT   R+PS +
Sbjct: 601 LAIVRSLSEAIGAKFQIESRIGEGTTARVRLPSPK 635



 Score = 38.8 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 158 RVSGSCAFLRILSL-----------DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
           R +GS  +LR+ +             GI+++   +      L+     F+ + D     V
Sbjct: 227 RPAGSTRWLRVRAAARRLTDGTTLWSGIFTDATLSVESTAALAQSERRFRDIIDIASDWV 286

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-----KEEIKKRMISSSALEKN 261
           W  + AG I + +  +    E  GI   + +G +R+        +   + +       + 
Sbjct: 287 WETNAAGQITFVSDRF---VEISGIPTDRIVGRTRRELPFYDWDDPGLQALEEDLRERRP 343

Query: 262 FCETVSTL--EHGNNKS-YKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTY 309
                  +    G+ +   +   +L   G      G   DV++E     +L    
Sbjct: 344 IHGRRIRIGTPSGDRQVSLRGRPILGDDGTFQGYRGTGTDVTREHEYVQRLHDAM 398


>gi|288957487|ref|YP_003447828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288909795|dbj|BAI71284.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1064

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 10/230 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+  +S+E+R+P+  I G  +LL+ +   SL   Q + V  +  S+  LL ++N
Sbjct: 365 NQAKSLFLATMSHEIRTPMNGIQGMLELLEHT---SLTGDQRELVSVVRESAGALLTIIN 421

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG + L    + L +++  V  ++A       + +    D  L    + D 
Sbjct: 422 DILDFSKIEAGRLDLERVPVALANVVEGVADTLAPSARAKGLSLVTYIDPDLPAEVLGDP 481

Query: 685 QRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFN 740
            R+ Q+   I  NA+ F+  GS TV ++ A  +GD      +V + G  I ++    +F 
Sbjct: 482 VRIRQVLFNIAGNAVKFTQSGSVTVRVELAHFDGDRVTIRVAVIDTGIGIAKEDQSRLFR 541

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F        RR  G GLGLSI      L GG V ++S     +T     
Sbjct: 542 PFTQAEVSTTRRFGGTGLGLSICRRLAELMGGDVGVTSEVNAGSTFWFTF 591


>gi|226324999|ref|ZP_03800517.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758]
 gi|225206347|gb|EEG88701.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758]
          Length = 809

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 168/403 (41%), Gaps = 31/403 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEE 471
           +    ++T    +E+  +  +     +++ L + +  +        L N  +       +
Sbjct: 387 MIFLRDITE-AKVESARHLQMAADNASMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQ 445

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-------LSDS 524
               P     +        Y   +  +    +I   D+ RK L+   ++       L + 
Sbjct: 446 MIYKPLGFYHDFQMQVLEKYKTLEPLEAIDILIAP-DNIRKKLKSENDIYKFEYCSLDEK 504

Query: 525 VLEY-SIIPLPN-----AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQ 574
             +  S IPL        + +L  ++VT   +AE    +AL E   +   A+  K  F+ 
Sbjct: 505 TYKIASYIPLEWKNGKLEKVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLS 564

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+++R+P+  I+G T +           +  + +  I+ SS  LL L+N++LD+A ++
Sbjct: 565 NMSHDIRTPMNAIVGLTAI--AGANVESQDRVIECLSKITESSRHLLGLINEVLDMARIE 622

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSK 693
           +G M L      L++L++ +       + E+     +  +  +  +   D  R+ Q+F  
Sbjct: 623 SGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFLN 682

Query: 694 ILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           ++SNA+ ++  G  +              G + F++++NG  +  +  K +F+ F     
Sbjct: 683 LMSNAIKYTPDGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADD 742

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +   R  G GLG++I  + +NL  G + + S+    T I   I
Sbjct: 743 QRTTRVQGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785


>gi|332533527|ref|ZP_08409390.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037074|gb|EGI73532.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 815

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 120/258 (46%), Gaps = 20/258 (7%)

Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER  +L +  +    A++ K+ F+ ++S+E+R+PL  +IGF+ L + +   S       
Sbjct: 427 AERTHSLAQAKKQSDLANQAKSQFLANMSHEIRTPLNAVIGFSSLARETDNAST---LIG 483

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I+++S  LLNL+NDILD++ +++  + +      L  L+  +            I 
Sbjct: 484 YLDKINSASKSLLNLINDILDISKIESQKLVIESIAFDLGALITRINNMFEQSAVNKGIE 543

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFS 722
            +V S   L   F+ D  R+ QI   + SNA+ F+S+GS V L    +         + +
Sbjct: 544 WQVNSKLPLDTWFIGDPMRIEQILLNLCSNAIKFTSQGS-VTLNIETEFTATNKVQLVIT 602

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I     K +FN F        R   G GLGL+I +    L G  +++ S    
Sbjct: 603 VSDTGIGIKPSQHKKLFNAFTQADSSTSRQFGGTGLGLTIAKELSQLMGADITLKSEVNK 662

Query: 781 VTTINCRI------PSKE 792
            +T    +      P KE
Sbjct: 663 GSTFTFSMRLETTEPKKE 680


>gi|312172971|emb|CBX81226.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora ATCC BAA-2158]
          Length = 987

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 159/370 (42%), Gaps = 37/370 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L       L+    +R     
Sbjct: 384 RLEEQEQFNRKIVASAPVGICILRTSDGTNILSN----ELAHNYLTLLTQEDRLRLTEMI 439

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFV 543
           C +  N       F  ++T                S++ L+ S +          +   V
Sbjct: 440 CGQQVN-------FVDVLTG---------------SNTNLQISFVHSRYRNENVAICVLV 477

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    +L 
Sbjct: 478 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK---ALP 534

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +      
Sbjct: 535 AGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQREFSPREVIAHITANYLAMAV 594

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  + +    D  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+A        F 
Sbjct: 595 KKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGG-IILQAYVKGDYLAFR 653

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  IP      +F+ F       QR  +G GLGL+I E  +N+  G + + S    
Sbjct: 654 VRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGM 713

Query: 781 VTTINCRIPS 790
            +    RIP 
Sbjct: 714 GSQFIIRIPL 723


>gi|260773908|ref|ZP_05882823.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii
           CIP 69.14]
 gi|260610869|gb|EEX36073.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii
           CIP 69.14]
          Length = 855

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 155/370 (41%), Gaps = 21/370 (5%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     K   +  +       ++   G +   NP+  +      +     +    +    
Sbjct: 352 QLAEQEKQFEDLFNFSLSPTLLWTAQGGLIRMNPSAEAY--FLSHYSQQHSLFARVKPQL 409

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                ++   ++  A+ T FD +    + +  +L + ++            +    ++T 
Sbjct: 410 IIAVQQAAQGNIVKALKTEFDGKTILWELSPIILDERIVSI----------ITQGQDITS 459

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            V AE+      E   ++  ++  F+  +S+ELR+PL  I+G + LLK +   SL  +Q 
Sbjct: 460 MVEAEQQSRLAREQAEESARLRADFLAKMSHELRTPLNGILGASQLLKQN---SLTQEQQ 516

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + V  + +S   LL ++NDILD + ++ G   +  S   +  +++ +++       E  +
Sbjct: 517 ELVNVLCSSGEHLLAVLNDILDFSKIEQGKFLIQNSDFPVVAMVSAIRRIYNPLCKEKGL 576

Query: 668 RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIFSV 723
            + +    +      +D+ RL QI   +LSNA+ F+ +GS  + L   +  G    + S+
Sbjct: 577 ELIIECAIEPEIRLHSDQIRLNQILFNLLSNAVKFTHQGSICIKLALIQQGGIDKLMISI 636

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I     + +F  FV       R   G GLGLSIV S + L  G +++ S     
Sbjct: 637 EDTGIGIAATDLQRIFAPFVQAESTTTREYGGSGLGLSIVSSLVELLHGEITVKSEVGYG 696

Query: 782 TTINCRIPSK 791
           T  +   P +
Sbjct: 697 TRFDLLFPIR 706


>gi|300866840|ref|ZP_07111517.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335150|emb|CBN56677.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1017

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 136/294 (46%), Gaps = 19/294 (6%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R S Q   E++ +    + +  L  A  M   + +     ++ AL +  E    A+  K+
Sbjct: 491 RNSFQLWKEIVQEKSYPWRVEELQTAAEMRNTLMLAMLEFSQAALEQAAERAAIANRAKS 550

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+P+  I+GFT ++  S+  ++  +  +++  IS S   LL L+ND+L++
Sbjct: 551 QFLAKMSHELRTPMNAILGFTQIMSRSQ--NIPPEFQEHLGIISRSGEHLLTLINDVLEM 608

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQ 689
           + ++AG + L  S   +   ++ +++  A K  E  + +++  +         D+ +L Q
Sbjct: 609 SKIEAGQLVLTESCFDIVRFIHSIQEMFALKASEKGLMLRIEQEINVPPYVYGDQAKLRQ 668

Query: 690 IFSKILSNAMDFSSKGST---VILKAARDNG-------------DFIFSVKNNGSSIPED 733
           I   +LSNA+ F+  GS    + +    D+                   V++ G  I   
Sbjct: 669 ILINLLSNAIKFTINGSITLRIKVIPEIDDAIDSSKVEALGSAIALYLEVEDTGCGIALC 728

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +SVF  F+        +G GLGLSI   F  L GG +++ SS    +   C+
Sbjct: 729 DLESVFEAFMQTERGRHAQGTGLGLSISRQFARLMGGDITVQSSLNQGSIFTCK 782


>gi|223983039|ref|ZP_03633243.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM
            12042]
 gi|223964989|gb|EEF69297.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM
            12042]
          Length = 1500

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 115/583 (19%), Positives = 233/583 (39%), Gaps = 59/583 (10%)

Query: 244  FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
              E  ++   +   +++  C  V   +    +  +I   + S  + G   DV+  +TV D
Sbjct: 777  LNEPARREFAAGETVQRQTCF-VQLPKESQGRYVEIKMNMVSTPDTG---DVTGILTVTD 832

Query: 304  QLTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL--ATNPSNDELLEFL 359
                T    ILH L+     +D    +     ++  L + +   L  AT+    + +E L
Sbjct: 833  ITEKTISNLILHQLSK--INYDFVADIDLGRDTYKILSQNEQTSLLNATHGCYSQWIEQL 890

Query: 360  RSANKLP---EQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLH----VIVTSNPRG 410
              ++ LP   E+       E + S  ++ ++   T+ +  P+G+       V VT     
Sbjct: 891  LESHVLPKDKERYERSLKPEYLKSRLQNEDSFTFTFSMRDPSGELRMKNATVSVTDRRLK 950

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-------PAF 463
                   ++T  V    +   L++V   T +    G         I  +        P +
Sbjct: 951  RICLSRTDITESV---REQQGLLRVAAVTFE--LAGFIDITSKRLIVHTRQTVVENLPPY 1005

Query: 464  RSLWKTEENRLSPGTHIR-----------NIAATCSRYYNESDGWDLFAAIITSFDDERK 512
                  E      G H +            +AA   R   +  G+D     +  + D + 
Sbjct: 1006 VVEHYDEAMDKFVGQHTQKEGLEEIRGQFRLAAMLDRLSQDPQGYDF----LFPYQDAQG 1061

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                 + +L     ++  + L  A        +    R ++ L        +A+  K+ F
Sbjct: 1062 ERIKKVSVLWGDA-DHQTVCLVRAD---VTEMLAAERRTKKTLENALIQAEEANRAKSDF 1117

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            +  +S+++R+P+  I+G T  L T+ LG  + + +  ++ I+ SS  LL+L+ND+LD++ 
Sbjct: 1118 LSAMSHDIRTPMNAIMGMT-ALATAHLGD-SQRVADCLKKITYSSKHLLSLINDVLDMSK 1175

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIF 691
            ++   + LN   + + +++ ++   +  +     I++ + ++  +   F  D  R+ QI 
Sbjct: 1176 IERSQITLNRVRLRMPEVIEQLAAIMGPQARIKAIQLNISANQIEHTVFYGDALRINQIL 1235

Query: 692  SKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
              ILSNA+ F+ +G T+        G       + F++++ G  I     + +F+ F  +
Sbjct: 1236 INILSNAVKFTPEGGTIDFIVEEIPGSDQNQVRYRFTIRDTGIGIEPQFLEHLFDPFARS 1295

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  GQ  G GLGLSI    I L  G + + S     +T    +
Sbjct: 1296 SQVGQIEGTGLGLSITRGLIELMNGSLQVESQVGQGSTFVIEL 1338



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 100/294 (34%), Gaps = 25/294 (8%)

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA------IFDQNRYLQFHNR 333
                      IA +    +T+  ++     ++  L  A+A        D  + L + N 
Sbjct: 56  TSYTAEIQTFEIAGEAVALLTLTPEVPAFSTMMEKLWGAVACGLVVCQIDNAQPL-YVNA 114

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTW 392
           ++ +++    A            ++    + L +  + +   ++ F V+ ++  T++   
Sbjct: 115 AYQQMFGAPAADFKAAMEAVHPQDWPALQSALAQLRDQRGALQHSFRVWDAARKTYRFIR 174

Query: 393 HLPNGQTLHVIVTSNPRGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-- 448
              + +TL       P+ G +   +  +++ Q  L+T+ NT  +   E I+ +  GVA  
Sbjct: 175 IDASIRTL-------PQTGAVLVALLLDVSEQFTLQTQLNTANQKMQEIINAIPGGVAIY 227

Query: 449 -VFGPDGRIKLSN--PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            V      +  S+  PA       + + L        I A  S          +   I  
Sbjct: 228 KVTDIFETVYFSDGVPALCGYTAEDYHALRLQDAALRIYAEDSERVVARAMEVVRTGIPA 287

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           + +  +    G L  +    ++ S +       +L  V    S   E  L   +
Sbjct: 288 TLEFRKVHRDGHLVWVR---VQISALGEDEGHPLLHCVFHNISDLKEAQLQMNH 338



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 120/364 (32%), Gaps = 51/364 (14%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
                L+ N +Y++        F+ A+ E+         +  ++    ++   +    + 
Sbjct: 105 DNAQPLYVNAAYQQMFGAPAADFKAAM-EAVHPQDWPALQSALAQLRDQRGALQHSFRVW 163

Query: 271 HGNNKSYKIVRVLNSF------GEAGIA--IDVSKEITVNDQL----THTYEILHNLTVA 318
               K+Y+ +R+  S       G   +A  +DVS++ T+  QL        EI++ +   
Sbjct: 164 DAARKTYRFIRIDASIRTLPQTGAVLVALLLDVSEQFTLQTQLNTANQKMQEIINAIPGG 223

Query: 319 IAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           +AI+         + +     L              D  L      ++       +  + 
Sbjct: 224 VAIYKVTDIFETVYFSDGVPALCGYTAEDYHALRLQDAALRIYAEDSERVVARAMEVVRT 283

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG------TIWMFENLTVQVDLETKYN 430
            I +  +  + H+      +G  + V V  +  G          +F N++   + + + N
Sbjct: 284 GIPATLEFRKVHR------DGHLVWVRVQISALGEDEGHPLLHCVFHNISDLKEAQLQMN 337

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            L       ++ +  G+A +      K+ N  F   + ++      G   +   A   + 
Sbjct: 338 HL-------VNSIPGGIASY------KVENNVFIPTFFSDGVAQLTGHSPQEFQAITGQN 384

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNAQTMLTFVNVTDS- 548
              +         I   D ER        ++S  VL+ S   P  +   +   +N     
Sbjct: 385 AMLA---------IYPPDRERVEKAALQAVVSGEVLDVSYRSPHRDGSLIWIHLNGRRMG 435

Query: 549 VRAE 552
            RAE
Sbjct: 436 PRAE 439


>gi|126651966|ref|ZP_01724158.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126591235|gb|EAZ85344.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 621

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 153/395 (38%), Gaps = 27/395 (6%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           + + V  T +  G     F +LT ++ + ++  +   +     + ++++GV      GRI
Sbjct: 238 RKVRVYGT-DEIGQLAVTFNHLTNRLQEAQSTTDAERRKLDSVLSNMTDGVIATDRKGRI 296

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N     L       ++ G  I ++     + Y+  D   +  AI  +F     +   
Sbjct: 297 ILINDPALELLHIS-RDITLGRPIASVLGI-DQEYSFEDLIHMSDAINLNFS----TSDA 350

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              L ++    +S+I             + D    E           K +  +  FV +V
Sbjct: 351 PYILRAN----FSVIQKETGFINGLITVLHDITEQE-----------KIEMDRREFVSNV 395

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT +  + + L        N     ++      +  ++ LVND+L L+ +D+ 
Sbjct: 396 SHELRTPLTTMRSYLEALADGAWKDENI-APTFLNVTQTETERMIRLVNDLLQLSRMDSS 454

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +LN   ++ N   N +         +  ++   +          D  ++ Q+   I+S
Sbjct: 455 DYELNKDIVLFNSFFNRIIDRFEMSKSDK-VQFARLFPETSFYVEIDTDKVTQVIDNIIS 513

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ +S  G  +              + ++G  IP++    +F+RF        R   G 
Sbjct: 514 NAIKYSPDGGNIRFGFTGQGDMLKVMISDDGMGIPKENVGRIFDRFYRVDRARARSMGGT 573

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I    I  HGG +   S +   TTI   +P
Sbjct: 574 GLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 608



 Score = 41.5 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 20/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T + +      +L N+T  +   D+   +   N   +EL  I        P    L
Sbjct: 264 EAQSTTDAERRKLDSVLSNMTDGVIATDRKGRIILINDPALELLHISRDITLGRPIASVL 323

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              +       + ++        FS   +    +  + +   +T  +        G I +
Sbjct: 324 G--IDQEYSFEDLIHMSDAINLNFSTSDAPYILRANFSVIQKETGFI-------NGLITV 374

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
             ++T Q  +E            +  T +      ++ L++G
Sbjct: 375 LHDITEQEKIEMDRREFVSNVSHELRTPLTTMRSYLEALADG 416


>gi|70989279|ref|XP_749489.1| two-component osmosensing histidine kinase (Bos1) [Aspergillus
           fumigatus Af293]
 gi|66847120|gb|EAL87451.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus fumigatus Af293]
 gi|159128901|gb|EDP54015.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus fumigatus A1163]
          Length = 1337

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 752 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 809

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 810 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 869

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              + D  RL QI   ++ NA+ F+  G  V L   + + +        F FSV + G  
Sbjct: 870 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VKLTIRKSDREQCAPNEYAFEFSVSDTGIG 928

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 929 IEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 988


>gi|289551852|ref|YP_003472756.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659977|ref|ZP_07912835.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590]
 gi|289181383|gb|ADC88628.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315494878|gb|EFU83215.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590]
          Length = 607

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 157/399 (39%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 225 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRV 284

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  L     +  +     + ++  +  +   + +   ++E   +  
Sbjct: 285 RIINDMALKMLGMAKEDLIGYYMLSVL--NLEQEFSLDEIQENNDSFLLDINEEEGIIAR 342

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 343 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 382

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L++       +   Q++      +  ++ LVND+L L+ +D  
Sbjct: 383 SHELRTPLTSMNSYIEALESGAWKD-GALAPQFLSVTREETERMIRLVNDLLQLSKMDNE 441

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 442 SDQINKEIVDFNMFINKIINRHEMSA--KDTTFVREIPNETIFAEIDPDKMTQVFDNVIT 499

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +  + +F+RF        R   
Sbjct: 500 NAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVEKIFDRFYRVDKARTRKMG 559

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 560 GTGLGLAISKEIVEAHHGRIWANSVEGQGTSIFITLPCE 598


>gi|281207530|gb|EFA81713.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1347

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 177/406 (43%), Gaps = 31/406 (7%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G+ L  I+ +      + +F ++   +DL        + Q   +  +S    V    G I
Sbjct: 445 GEMLRGILVTL----VLLLFYSILSSIDLREIERKEERNQS--LFKISNEALVVHKGGFI 498

Query: 457 KLSNPAFRSLWKTEENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAII---TSFDDER 511
             +N AF S+++ +   +       I          Y++    D     +   T+ D   
Sbjct: 499 TDANAAFESMFQIKLQDMLYPVPSGIWEFLPDLESIYSQDGSMDTPLPPVIETTAIDSGG 558

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           ++    +     +   Y+  P+ +  +++      + + A+ AL +       A+E K  
Sbjct: 559 RAFDVEVRTNKAT---YAGKPV-DVFSIIDITGRKNLIEADVALRK----AEAANEAKVV 610

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+EL++P+  I+   ++L+ S   +L++ Q ++++ I  SS  L +LV DILD +
Sbjct: 611 FLTTISHELKTPINGIMASCEILERS---NLDAGQREFLDAIRMSSNYLYSLVLDILDYS 667

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            ++AG M+L      L  +L +    ++       + +    D  +   V  D  R+ QI
Sbjct: 668 KMEAGKMELVLDDFSLLKMLEDTLSMVSKNAQPKGLDLVGFVDSNVPVLVHGDATRVRQI 727

Query: 691 FSKILSNAMDFSSKGST-VILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
              ++SNA+ F+ +G   + +K  R+         +F V+++G  I  +    +F  F  
Sbjct: 728 LLNLISNAIKFTDEGQIKIRVKLDREITETKEYQLLFEVEDSGIGIKNEHIVLLFTPFSQ 787

Query: 745 --NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +++  + +G GLGLSI +   N+  G V ++S     +T +  I
Sbjct: 788 IDSSNSRKYQGTGLGLSISKRLANMMDGEVFVNSDFGIGSTFSFTI 833


>gi|254785929|ref|YP_003073358.1| transport-associated [Teredinibacter turnerae T7901]
 gi|237686801|gb|ACR14065.1| transport-associated [Teredinibacter turnerae T7901]
          Length = 485

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 94/495 (18%), Positives = 189/495 (38%), Gaps = 53/495 (10%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
                + D++  +   +     +       L    ++D +    R  +  PE  +    +
Sbjct: 20  PDGSIVLDEHGRILAISEQAQTILGWRAEQLIGQMAHDRICISTRRLHHAPE--DCPICR 77

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYN 430
           +   +  KSS      W    G  + V   +        G  +  F         E +  
Sbjct: 78  DADSTTVKSSF-----WLSAEGDYVSVDYRTARLPVTADGHFVVRFH------RNEQQDY 126

Query: 431 TLVKVQ--GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI--RNIAAT 486
           +  ++Q   + +D     +  F   G++   NPA + L  T          I  R+I   
Sbjct: 127 SFAELQKFADFVDKNPAAIVEFDEFGQMLFCNPAMQHLMMTHGFDDQGHARIMPRDINEI 186

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C++     D  +L A +  + D              D    +   PL +         V 
Sbjct: 187 CAQIV---DSQNLRAPVEVAID--------------DFWFNWHFSPLVSPVGQSVIGYVF 229

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D    +RA   + +A     + +  F   + +ELR+PL  I+G++DLL      +L  + 
Sbjct: 230 DVSEVKRA---QAQASVARAQARRDFYAKMIHELRTPLNAIVGYSDLLLCRNAENLKDRD 286

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  I      L  L++D LD++ ++AG M    +     D+L+E+ + +        
Sbjct: 287 LKALRGIKVGGMQLNELISDTLDISKIEAGKMTTEITLFRPQDVLDEIHEQMHYLAEMKK 346

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--------NGD 718
           +  +V    +  +  +D  ++ QI   ++SNA+ ++ KG   ++    D          +
Sbjct: 347 LHYEVQCPPEF-TVASDIHKVRQILINLISNAVKYTRKGQVSVVVQPLDVEPPMEDCAEE 405

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           F+  V + G  IP D   S+F+ +        +   G GLGL++V   + + GG +S++S
Sbjct: 406 FLIEVADTGMGIPADQLDSLFDSYQRVKESNTQGIQGTGLGLALVSDVVEILGGEISVAS 465

Query: 777 SDEGVTTINCRIPSK 791
                +  + R+P++
Sbjct: 466 EYGAGSRFSVRLPTQ 480


>gi|284923232|emb|CBG36326.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli 042]
          Length = 778

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 150/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTVEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|262173923|ref|ZP_06041600.1| sensor protein TorS [Vibrio mimicus MB-451]
 gi|261891281|gb|EEY37268.1| sensor protein TorS [Vibrio mimicus MB-451]
          Length = 968

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 124/261 (47%), Gaps = 5/261 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +      +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTHQLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   SL S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++ +   L  L+ 
Sbjct: 494 LLQET---SLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    +  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRI 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
               +     F+V+++G  I E    S+F+ F       +++G GLGL+I    +   GG
Sbjct: 611 SQDPEGQGIHFAVEDSGIGIAEQDQASLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGG 670

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + +SS     +  +  +P +
Sbjct: 671 ELQLSSQLGQGSCFSFTLPLE 691


>gi|229177538|ref|ZP_04304916.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
 gi|228605900|gb|EEK63343.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
          Length = 896

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST------VILK------AARDNG 717
           +  SD     F  D +R+ QI   +LSNA  F+ KGS       + +        +    
Sbjct: 598 IKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIEISNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGAGSTFTVYIP 731


>gi|296156019|ref|ZP_06838858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295893525|gb|EFG73304.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 776

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 160/381 (41%), Gaps = 19/381 (4%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T + +      T++  Q    +HLS+ + +    G I   N     +       +   
Sbjct: 268 DITERKEA----QTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREI--- 320

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +    A                A + +    R  L       S  V E  + PL NA+
Sbjct: 321 --LGRPVAMFLPPEQALGIRREALAALAAEGTWRSELPFVRRDGSRGVCETVVKPLANAR 378

Query: 538 T-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +    ++T+  RAE+ LT  N  L KAD  K+ F+  +++ELR+PL  +    +
Sbjct: 379 GDVYGAVSINRDITERRRAEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMRNVLE 438

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+  +    + + S   +        + +LV+D+L+++ +  G ++L    + L   + 
Sbjct: 439 ILRLKEFA--DPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGKLELRKQRLELARAMQ 496

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              ++    +  ++  + V    +    +AD  RL Q+   +L+NA  ++  G ++ L A
Sbjct: 497 SAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNNAAKYTPPGGSISLAA 556

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
            R+  + +  V+++G  IP +   SVF  F   A      + G+G+GL++V     LHGG
Sbjct: 557 EREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLGIGLALVRGLAELHGG 616

Query: 771 HVSISSS-DEGVTTINCRIPS 790
            V+  S      +    R+P 
Sbjct: 617 TVAAFSEGPGKGSEFMIRLPL 637



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 76/286 (26%), Gaps = 41/286 (14%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANI-------SYKK 224
              + +A      K+L     V  +         W  +   G   W+         +  +
Sbjct: 136 NAEASVAAHQFAQKELQESRDVLSLAMRGARMGAWSHEPKSGRFWWSRELEALAGYAEGR 195

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKI 279
              T G  F++          E +   + +       F    +      +E     +Y  
Sbjct: 196 FAHTPGGFFERIHPGDLIALNEAVDHAVETGDDYVAEFRFLHASGDWCWMEGRGRAAYDR 255

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
             V       G+ ID+++       L     I  +L+ AI I D    +   N     + 
Sbjct: 256 HGV--PLMIYGLGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERML 313

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLP-------EQLNWKTWKENIFSVYKSS-----ET 387
              +  +   P    +  FL     L              TW+  +  V +       ET
Sbjct: 314 GYRMREILGRP----VAMFLPPEQALGIRREALAALAAEGTWRSELPFVRRDGSRGVCET 369

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
                    G             G + +  ++T +   E +   L 
Sbjct: 370 VVKPLANARGDVY----------GAVSINRDITERRRAEQQLTRLN 405


>gi|294506015|ref|YP_003570073.1| sensor histidine kinase [Salinibacter ruber M8]
 gi|294342343|emb|CBH23121.1| sensor histidine kinase [Salinibacter ruber M8]
          Length = 593

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/534 (17%), Positives = 206/534 (38%), Gaps = 40/534 (7%)

Query: 279 IVRVLNSFGEAGIAIDVS------KEITVNDQLTHTYEILHNLTVAIA---IFDQNRYLQ 329
           ++++    G AG+ +  S           +D       +L  L V +    +  +   + 
Sbjct: 64  VLQLTTVGGIAGLCVGYSTAQLKEATRDAHDDRNRLENLLDGLPVPVVHGRVEGETLNIL 123

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N +F   +  D          + L + +R     P      T + N  ++ +     +
Sbjct: 124 AANAAFERAFGHDPE----ESIGENLYDLIR-----PGDTQRGTGRINHQALDEGVAEAE 174

Query: 390 DTWHLPNGQT-LHVIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
             +  P+GQ    + V      G   T  ++ ++T +   E +  TL       +D    
Sbjct: 175 VQYETPDGQRKFQLRVAQALDSGASETYSVYTDITKRKRREERLQTLYARLQLALDVSDT 234

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE--SDGWDLFAAI 503
           G   +       + +     L+  E      G      AA   R + +      +     
Sbjct: 235 GTFDWEIQADEVIWDETSERLFGYEP-----GGFPGTFAAWAQRVHPDDLPGVREDIEQA 289

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEK 558
           I + ++ R   +  +       +E   I   + +      +    ++T+  + E+ L E 
Sbjct: 290 IDAQEEFRTEFRAQIPGGQQRWIEGRGIVEYDDRGEPIRMLGIHTDITERKKREQTLREA 349

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   +A  +K++ + ++S+E+R+PLT+I GF+++L+ +    L+ +   +   I  SS 
Sbjct: 350 KERAEEAARLKSAMLANMSHEIRTPLTSITGFSEVLEQN----LSGQHGDFATKIRKSSE 405

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L   +  +L L+ +++ + KL    + L  ++ +V  ++   + E ++ ++        
Sbjct: 406 RLQRTLESVLHLSKLESSVHKLEREEVSLRAVVEDVTAALRDDLTEKSLALQTEIPDSPV 465

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S +++   L +I   +L NA+ F+  G  V ++   +       ++++G  +  +    +
Sbjct: 466 SGISNEDALHRICRNLLENAIKFTPAGGCVGIRLLDEGRSATLEIEDSGIGMDPENVPGL 525

Query: 739 FNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  F   +     +  G GLGLSIV+   +  GG V + +     T     +P 
Sbjct: 526 FQAFRQESEGMAREYEGSGLGLSIVKRLTDELGGEVDVETEKGEGTCFAVTLPL 579



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 90/276 (32%), Gaps = 37/276 (13%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD---ILWANISYKKNTETEGIVFQK 235
           A+     +   +  +  + L D L   V H    G+   IL AN ++++    +    ++
Sbjct: 83  AQLKEATRDAHDDRNRLENLLDGLPVPVVHGRVEGETLNILAANAAFERAFGHD---PEE 139

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNNKS-YKIVRVLNSFGE 288
           +IGE+          +  +     +   E V+  E       G  K   ++ + L+S   
Sbjct: 140 SIGENLYDLIRPGDTQRGTGRINHQALDEGVAEAEVQYETPDGQRKFQLRVAQALDSGAS 199

Query: 289 AGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              ++  D++K     ++L   Y      L         ++        + +   L+  +
Sbjct: 200 ETYSVYTDITKRKRREERLQTLYARLQLALDVSDTGTFDWEIQADEVIWDETSERLFGYE 259

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTL 400
                          F   A ++    +    +E+I     + E  +  +   +P GQ  
Sbjct: 260 PGGFPGT--------FAAWAQRV-HPDDLPGVREDIEQAIDAQEEFRTEFRAQIPGGQQR 310

Query: 401 HVIVTS----NPRG---GTIWMFENLTVQVDLETKY 429
            +        + RG     + +  ++T +   E   
Sbjct: 311 WIEGRGIVEYDDRGEPIRMLGIHTDITERKKREQTL 346


>gi|326443818|ref|ZP_08218552.1| putative two-component system sensor kinase [Streptomyces
            clavuligerus ATCC 27064]
          Length = 1763

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 24/279 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1282 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1341

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L+ KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 1342 NPETNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEA 1401

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----- 710
            +      E  +   V    +L  +   D QRLLQ+   +LSNA+ F+  GS  ++     
Sbjct: 1402 TFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPSG 1461

Query: 711  ---------------KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
                                +G  I FSV + G  I     + +F  F         +  
Sbjct: 1462 ADVPQSIREQLLEVGSLRDPDGALIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYG 1521

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGLSI      L GG +  +S     +T    +P +
Sbjct: 1522 GTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLR 1560


>gi|218896059|ref|YP_002444470.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
 gi|218545392|gb|ACK97786.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
          Length = 896

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFNPIETTNLSHDMQSISKE 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNLGEGSTFTVYIP 731


>gi|228475575|ref|ZP_04060293.1| sensor protein YycG [Staphylococcus hominis SK119]
 gi|228270357|gb|EEK11792.1| sensor protein YycG [Staphylococcus hominis SK119]
          Length = 608

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 162/399 (40%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 225 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 284

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  L  G ++ N+       ++  +  +   +I+   ++E    +G
Sbjct: 285 RIVNDMAIKMLGMAKEDL-IGYYMLNVLKIEGD-FSLEEIQENNDSILIDMNEE----EG 338

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++ S +        N   +    +VT+  + ER               +  FV +V
Sbjct: 339 IIARVNFSTI-VQDTGFVNG-YIAVLHDVTEQQQVERE--------------RREFVANV 382

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+       N     ++      +  ++ LVND+L L+ +D  
Sbjct: 383 SHELRTPLTSMNSYIEALEEGAWKDEN-LAPSFLSVTREETVRMIRLVNDLLQLSKMDNE 441

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 442 TEQITKEIVDFNMFINKIINRHEMAA--KDTTFVREIPNETIFTEIDPDKMTQVFDNVIT 499

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 500 NAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 559

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 560 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 598



 Score = 37.6 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +    L        +
Sbjct: 252 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMAIKMLGMAKEDL--------I 303

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ +  K+    + +  +EN  S+       +      N  T  ++  +    G I +
Sbjct: 304 GYYMLNVLKIEGDFSLEEIQENNDSILIDMNEEEGIIARVNFST--IVQDTGFVNGYIAV 361

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 362 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 403


>gi|313109554|ref|ZP_07795506.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310882008|gb|EFQ40602.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 1417

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 200/521 (38%), Gaps = 38/521 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +   +         +L   + V+I   D++  +   N     +       +    S  
Sbjct: 479 AERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS-P 537

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVT------- 405
            LL   R      ++L  + ++  +     + +ET + T+   +G  L V ++       
Sbjct: 538 TLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRDE 597

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +    G + +  ++T   + E +            D    G+  +         N     
Sbjct: 598 AGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMCE 657

Query: 466 LWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSL 514
           L+                    H  ++  T +      +G   +  I      D   + +
Sbjct: 658 LYGQPLALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGGIRFI 717

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   ++  D+       PL   Q     +++T   + +  L E  E    A   K+SF+ 
Sbjct: 718 QAGAQVERDA----DGNPL---QVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLA 770

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  ++G   L + +    LN +Q  Y++  S+++T LL L+NDILD + ++
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQT---DLNERQRDYLDKASSAATSLLGLLNDILDYSKIE 827

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG + L      L  L+ ++   ++    + ++ +    D +L  + V DR RL QI   
Sbjct: 828 AGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILIN 887

Query: 694 ILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +  NA+ F+++G   V L+    +   +     V + G  I  +  + +F  F       
Sbjct: 888 LAGNALKFTARGHVLVSLRRLAHDAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEAST 947

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL I +  ++L GG + + S+    +     +
Sbjct: 948 SRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWFDL 988



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 91/306 (29%), Gaps = 39/306 (12%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A+   +             I+ N    I     +  +   NR    L+            
Sbjct: 331 ALGRQRRHREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGR-- 388

Query: 352 NDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
              +++ L   +K  E+L+   +  ++     + +   H+D   L    T+  I+   P 
Sbjct: 389 --RVVDLLVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPIL--GPD 444

Query: 410 GGTIW---MFENLTVQVDLETKYNTLVK------------------VQGETIDHLSE-GV 447
           GG +       +++ +   E +   L                    + G  +   SE  +
Sbjct: 445 GGVVGASKTVRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSI 504

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITS 506
                DG I   N     +     + +        + +        +  G + F  ++  
Sbjct: 505 ITLDRDGIISGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVAR 564

Query: 507 FDDERKSLQGTLELLSDS---VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEK 558
            + E    +    L  D     +  S+  L +        +   V+VT+   AER +   
Sbjct: 565 AEQEGAETREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAA 624

Query: 559 NEALRK 564
            + L+ 
Sbjct: 625 RDQLQM 630



 Score = 38.4 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 24/207 (11%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                +           + + ++G+   G DG I   N    +L+   E +       R 
Sbjct: 334 RQRRHREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVG----RR 389

Query: 483 IAATCSRYYNESDGWDLFAAI-----ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +         E++  D+ A I     + SFD  R+   G L    D  +  S I  P+  
Sbjct: 390 VVDLLVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHL---LDVAVTVSPILGPDGG 446

Query: 538 TM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +    T  +++    AE  + E N  L      + +       ELR  L  ++G   L 
Sbjct: 447 VVGASKTVRDISAKKAAEARIRELNTGLEHQIAERTA-------ELRR-LNVLLGSV-LQ 497

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILL 621
             S++  +   +   +   +  +  +L
Sbjct: 498 AASEVSIITLDRDGIISGFNLGAERML 524


>gi|310826953|ref|YP_003959310.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612]
 gi|308738687|gb|ADO36347.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612]
          Length = 933

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 162/415 (39%), Gaps = 31/415 (7%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV--------QGETIDHLSEGVA--- 448
             V +  +     I M  N+  + + + + N L  +          +  ++  E +    
Sbjct: 368 YAVRIFQDNEERIILMLRNIDDKQEAQQRENILSNLCQCYYSIYLFDLENNTEEAIWQEE 427

Query: 449 VFG-----PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           V       P G +      +    +    +       R  +    RY    +        
Sbjct: 428 VIRKRREFPKGSLDTY---YSKFVREYVYKADQEKMYRAGSPDFLRYALSLEQPVYEIDF 484

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA-LTEKNEAL 562
              + D    ++    +      E + +   N       +   +     R  L    EA 
Sbjct: 485 RRIYPDGLYWVRSRFSIAEIRDGEVTKVIFANMNINEQKLEEMEQEEQNRKVLLAAYEAA 544

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+E K+SF+  +S+++R+P+  IIG + +  +        K    +E I+ SS  LL 
Sbjct: 545 KTANEAKSSFLAQMSHDIRTPMNAIIGMSSIAASQINNP--QKVKDCLEKINLSSKHLLA 602

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFV 681
           L+N+ILD++ ++ G + L      L++++ ++   + T+  E N  + VI  D +    +
Sbjct: 603 LINEILDMSKIEKGKIALAEEPFCLSEVIEDISAMVRTEAAEKNHELTVIIKDIEHNILI 662

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF------IFSVKNNGSSIPEDMC 735
            D  R+ Q+   ++SNA+ ++  G  ++L     +G        +F+V++NG  + ED  
Sbjct: 663 GDAGRIRQVLLNLISNAIKYTLNGGEILLTVQEVSGKISGYGSFVFTVEDNGIGMDEDFL 722

Query: 736 KSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F  F         + +G GLG+SI +  +    G++ + S     +     +
Sbjct: 723 DYIFVPFSRAEDPQVQKIQGTGLGMSISQKIVAAMQGNIQVESEKGKGSRFVVTL 777


>gi|262384753|ref|ZP_06077886.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293734|gb|EEY81669.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 943

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    +    A+  K+ F+  +S+E+R+P+  I+G + +   +       K    +E + 
Sbjct: 543 IQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI--DNTDKIKDCLEKVI 600

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL L+ND+LD++ +++G ++L + +      L + +     +     I  + I  
Sbjct: 601 MSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILA 660

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
             L    + D  RL Q+ S +LSNA+ F+     + L+ ++ + D       F V + G 
Sbjct: 661 SDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTSEDQENVYLRFEVIDTGC 720

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F  F         +  G GLGLSIV+ F  L GG + ++S     +T   
Sbjct: 721 GIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTV 780

Query: 787 RIP 789
            +P
Sbjct: 781 DLP 783


>gi|320353213|ref|YP_004194552.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121715|gb|ADW17261.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 564

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  R L +K      A++ K+ F+  +S+E+R+P+  +IG ++LL  +    L  +Q  +
Sbjct: 24  RENRKLRKKARQADSANQAKSDFLAMISHEIRTPMNGVIGISELLLDT---DLQPRQKHF 80

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S+T LL L+N++LD + ++A  M L      L  LL ++            +R+
Sbjct: 81  AHLIRTSATSLLTLINNLLDFSKIEADKMVLESEPFDLRALLEQLLSLYRVTGKSKGLRV 140

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSV 723
               D  L   +V D  RL Q+   +L NA+ F+ +G+ ++L+  ++          F V
Sbjct: 141 NAEIDPSLSRQYVGDAHRLRQVLVNLLGNAVKFTEQGA-ILLRVRKERAGETAELLRFEV 199

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  I E     +F  F        RR  G GLGLSI    I L  G     S     
Sbjct: 200 EDSGVGIAEGSMDKLFQPFSQVDSSSTRRYGGTGLGLSICARLIKLMEGEFGARSEYGKG 259

Query: 782 TTINCRIPSK 791
           +T    +P +
Sbjct: 260 STFWFSLPLR 269


>gi|262051886|ref|ZP_06024101.1| two-component sensor histidine kinase [Staphylococcus aureus
           930918-3]
 gi|259160213|gb|EEW45242.1| two-component sensor histidine kinase [Staphylococcus aureus
           930918-3]
          Length = 608

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 153/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 286 RIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 343

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 344 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++           +         K      D  ++ Q+F  +++
Sbjct: 443 SDQINKEIIDFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIMEAHNGRIWANSVEGQGTSIFITLPCE 599



 Score = 37.6 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +           D +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGM--------AKEDII 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++   +  +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|307824660|ref|ZP_07654884.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307734314|gb|EFO05167.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 929

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/402 (21%), Positives = 164/402 (40%), Gaps = 24/402 (5%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + + +L  QV+  T    L   Q     H+++ G         + + +     L++ +++
Sbjct: 387 FHYTDLERQVEQRTTDIRLAMEQLNDAQHIAQVGSWELNLSNSLLIWSDEIYHLFEIDKD 446

Query: 473 RL--SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           +   +    +  I        NE+    L                  ++ +++    Y  
Sbjct: 447 QFGATYEAFLNAIHPEDRDAVNEAYSGSLLTQQPYEITHRLLMPDRRVKYVTERCASYFD 506

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSF 572
                 +++ T  +VT+  R E AL   NE L +                   +  K+ F
Sbjct: 507 TDGKPVRSVGTVQDVTELKRTELALKHLNEELEQRVQQRTELLLKAKEEADRANNAKSEF 566

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+ELR+P+  I+GF  LL+T +   +   Q+  V  I  +   LL L+N++LDLA 
Sbjct: 567 LSRMSHELRTPMNAIMGFAQLLETDRETPITLDQADNVREIRHAGQHLLELINEVLDLAR 626

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++ G ++L+   + +  L+ E    +        I +K+  DG  G+  ADR RL QI  
Sbjct: 627 IETGRIELSLEPVEVPLLIGECMALLQPLTLGRRIELKLDIDGT-GTVQADRLRLRQILL 685

Query: 693 KILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQ 750
            +LSNA+ ++     V +       G    +V ++G  I  D    +F  F    +    
Sbjct: 686 NLLSNAIKYNRDRGNVHITCQPVAAGRIRIAVCDSGRGIAVDAMTRLFKPFERIESAYDG 745

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G G+GL++ +  +   GG + + S     +T    +P+ E
Sbjct: 746 IEGTGIGLALSKRLVEAMGGTIGVESVVGAGSTFWVELPAAE 787


>gi|288801698|ref|ZP_06407140.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
 gi|288335740|gb|EFC74173.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
          Length = 878

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 5/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +  K      A++ K  F  ++S+ELR+PLT I    + +      +LNS+Q   ++ 
Sbjct: 358 RTILMKRRIEEDANKAKLQFFTNISHELRTPLTLIADPVNYIIHD--DNLNSQQRSMLQI 415

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +  +L  LV++ILD   V  G M+L  S   L++ + +     +    + +I I + 
Sbjct: 416 VQRNVLVLTQLVSEILDFRKVQNGKMELRLSDFNLSESMKQWIMLFSASAQKKHIAISMN 475

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   +    AD+ ++ +I   +LSNA+ ++S+G  + L A  +NG  + SV +NG  I  
Sbjct: 476 APDAV-MLRADQDKIERICYNLLSNALKYTSEGGEITLTAKEENGRVMISVADNGCGISS 534

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           D    +F+RF    + G  RG G+GL+IV++F  LH G VS +S +   +T    IP ++
Sbjct: 535 DELPYIFDRFYQAKNAG--RGTGIGLAIVKAFTELHHGEVSATSIEGKGSTFTIHIPVRQ 592


>gi|171322587|ref|ZP_02911366.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
 gi|171092081|gb|EDT37503.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
          Length = 1001

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 158/378 (41%), Gaps = 26/378 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    I     G+ +    +G   + N A ++   T            +
Sbjct: 385 RRTIRLIESEALNRTLIRTAPAGLMLLSLANGDTMVRNEAAQAFDATGTEP--------S 436

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-EYSIIPLPNAQTMLT 541
           +     + Y+ S        ++T       +  GT  L +  V   Y  + +     + T
Sbjct: 437 LGKRIWQAYHGSIVGGRTPRVVTHELPVGLAGDGTAYLAAHIVRTRYRGVDV----LLCT 492

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             ++T   + E  L E  EA   A++ K++F+  +S+E+R+PL  I+G  +L++      
Sbjct: 493 LTDITAHKQMEGMLREAREAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMER---AP 549

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L +++ + ++ + +SS  LL ++ND+LDL+ V++  M L      L  +L +V       
Sbjct: 550 LPAEERRRLQTVMSSSDALLRVINDVLDLSKVESNQMVLEAVPFDLRAVLRDVAAIFRPL 609

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---- 716
               ++ ++   D +L   +V D  RL QI S ++SNA+ F+ +GS V ++A        
Sbjct: 610 AAARHLALECRIDPQLADGYVGDPTRLRQIVSNLVSNAIKFTERGS-VTIEARPTGAVGQ 668

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
                  V++ G  I  +   ++F+ +V        +  G GLGL +      L  G ++
Sbjct: 669 AHGVEVVVRDTGIGIAPESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMHGDLA 728

Query: 774 ISSSDEGVTTINCRIPSK 791
           + +      T    +P +
Sbjct: 729 VETRPGEGATFIVSLPLR 746


>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1410

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 28/255 (10%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +  + L +  +    A + K+ F+  +S+E+R+P+  +IG T LL  ++   L S Q
Sbjct: 653 ERQKTAQDLAKVRDEALAATKAKSEFLATMSHEIRTPMNAVIGMTGLLLDTR---LTSTQ 709

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YVE I +SS  LL+L+NDILD + +++G ++L      L   + E    +ATK    N
Sbjct: 710 QDYVETIRSSSDALLSLINDILDFSKIESGKLELEQHPFDLRTCIEESLDLLATKAVSKN 769

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDN 716
           I +  + D    S  + D  RL QI   +LSNA+ F+  G  VI         + +  + 
Sbjct: 770 IELAYLIDPITPSKVIGDGARLRQILVNLLSNAVKFTETGEVVISLKAVSLEPIVSEENL 829

Query: 717 GD-------------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
            +               F+V++ G  IP      +F  F  V ++   Q  G GLGL I 
Sbjct: 830 DENSTETTTQPNRYQIQFAVRDTGIGIPPARMNRLFKSFSQVDSSTSRQYGGTGLGLVIS 889

Query: 762 ESFINLHGGHVSISS 776
           +    + GG + + S
Sbjct: 890 KRLAEMMGGQMWVES 904


>gi|28377604|ref|NP_784496.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|28270437|emb|CAD63339.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
          Length = 467

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 159/378 (42%), Gaps = 32/378 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + Q     +     K     + +L  GV V     +++LSNPA   L +           
Sbjct: 108 SYQKSQTRRAELQEKELMMIMRYLPVGVMVIDHRRQVQLSNPAMSELLQV---------S 158

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  +A   ++         L    ITS  ++R ++              ++IP PN Q +
Sbjct: 159 VNTVAHIYTKDIQLYALTKLIEDTITSGKNQRATI--------------TLIPAPNTQVV 204

Query: 540 LTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                     R++     +      +   +++++ FV + S+EL++P+T I GFT+ L +
Sbjct: 205 EASTVYIQGNRSQFQIVLMLYDITEVYMIEQMQDDFVSNASHELKTPITAISGFTETLLS 264

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK-LNYSTIVLNDLLNEVK 655
                 ++   Q++  I+  S  L++L+ D+L L+ + A     L  + + +  L+ +  
Sbjct: 265 GAKDDPDT-LDQFLHIIADESQRLIDLIQDVLSLSRIRAQNTTMLTLAPLAVRPLIEQEL 323

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +   +   ++ I    D  L    +D Q+L QI   +L+NA+ ++    +V +     
Sbjct: 324 AVVQQAIERQHLTINNQVDADL-MITSDSQKLSQIIKNLLTNAIKYNRPHGSVTIATMVS 382

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           +  +   VK+ G  I  D  + +F RF   +    ++   G GLGL+IV+  +N   G +
Sbjct: 383 HQTWSLIVKDTGIGISADDQQRIFERFYRASPSRSQQLVSGTGLGLAIVQELVNAMHGTI 442

Query: 773 SISSSDEGVTTINCRIPS 790
            + S     TT+   +P 
Sbjct: 443 DVVSQRGVGTTMTVTLPL 460


>gi|326478067|gb|EGE02077.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97]
          Length = 2408

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+T +IG ++LLK +K   L+ KQ  YV
Sbjct: 1868 AEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATK---LDPKQDVYV 1924

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     E  +   
Sbjct: 1925 ESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETV 1984

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
               D        + D  RL QIF  +LSN+  F+  GS V ++A  +            V
Sbjct: 1985 EDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIVEEDTPEKIRVTCKV 2043

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I E+    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 2044 ADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGE 2103

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2104 GTTVTFTL 2111


>gi|326470773|gb|EGD94782.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818]
          Length = 2374

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+T +IG ++LLK +K   L+ KQ  YV
Sbjct: 1868 AEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATK---LDPKQDVYV 1924

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     E  +   
Sbjct: 1925 ESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETV 1984

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
               D        + D  RL QIF  +LSN+  F+  GS V ++A  +            V
Sbjct: 1985 EDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIVEEDTPEKIRVTCKV 2043

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I E+    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 2044 ADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGE 2103

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2104 GTTVTFTL 2111


>gi|239609727|gb|EEQ86714.1| DRK1 histidine kinase [Ajellomyces dermatitidis ER-3]
          Length = 1287

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 697 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 754

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 755 SLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSLAYQVDSSVP 814

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
            +V  D  RL QI   ++ NA+ F+  G  V L  +R + +        F FSV + G  
Sbjct: 815 DYVTGDPFRLRQIILNLVGNAIKFTEHGE-VKLAISRSDREECKDNEYAFEFSVSDTGIG 873

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     ++ +  
Sbjct: 874 IEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFT 933


>gi|154279698|ref|XP_001540662.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
 gi|150412605|gb|EDN07992.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
          Length = 1288

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 112/239 (46%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 698 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 755

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 756 SLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSLAYQVDSSVP 815

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSI 730
            FV  D  RL QI   ++ NA+ F+  G   +  +  D  +       F FSV + G  I
Sbjct: 816 DFVTGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSDREECKDNEYAFEFSVSDTGIGI 875

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     ++ +  
Sbjct: 876 EEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFT 934


>gi|149277545|ref|ZP_01883686.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149231778|gb|EDM37156.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 656

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 147/331 (44%), Gaps = 20/331 (6%)

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +E        I+ I  +  +Y +E        +  T  D+  + +    + LS  +    
Sbjct: 193 QEILFINNHLIKQIIQSLQKYKSEEQQH--INSGKTELDNGLQEVDFRYKRLSGLIF--- 247

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
              L +    +   N+    R ++ L   +         K SF+  +S+E+R+PL ++IG
Sbjct: 248 --FLLSGLVCIILYNIWKIYRYQKNLVYHSAFAEHNAASKTSFLAGMSHEIRTPLNSVIG 305

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F++ L  SK   L+  Q + ++ I+ SS ILL++VN +LD +  + G M    +  +  D
Sbjct: 306 FSEQLGQSK---LDDTQREQLDAITNSSKILLDIVNQVLDFSKFETGKMVFERAPFIPQD 362

Query: 650 LLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +L EV  +++ +     I I    D     S   D  RL Q+   +L NA+ F+ +G  V
Sbjct: 363 ILEEVFSTLSIQAVNKGISIAKSFDISPELSVKGDALRLKQVLINLLGNAIKFTKEGE-V 421

Query: 709 ILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSI 760
            +KA      +D    I  VK+ G  I ++    +F  F   A       ++G GLGL+I
Sbjct: 422 TIKATVSSDKKDQIRLIVWVKDTGVGISKENVNMIFGEFSQVASAQKDASQKGTGLGLAI 481

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  I   GG++ ++S +   +     +P +
Sbjct: 482 SKKIIEQQGGYIRVTSEEGKGSVFKFSLPME 512


>gi|83648936|ref|YP_437371.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83636979|gb|ABC32946.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 890

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/404 (22%), Positives = 170/404 (42%), Gaps = 21/404 (5%)

Query: 397 GQTLHVIVTSNP-RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           G+ +  +    P     I +FE+   ++ L   Y   +  Q       SEG   F P+  
Sbjct: 207 GRVMQALRRIQPFEQVYITLFEDNMERLVLVKSYGDALTAQEV---KQSEGFTFFLPEDE 263

Query: 456 IKLSNPAF-RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
               N  F R L K E   +          +   +   +       A      D++    
Sbjct: 264 ----NSIFVRPLVKDEPLFIPRVPPPDATTSKVDKRLYDFRAPISIAYFPLHVDNKVIGG 319

Query: 515 QGTLELLSDSVLEYSIIP-----LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI- 568
            G +  +    L+ + I      L    T +    + +  R  +      +   +  E  
Sbjct: 320 FGFVNYVQPLDLDIAAIESIAEYLVQVGTAVRNAQLFEQARQAKEQALNAQRAAEVSEAA 379

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+T I+G+++ L+ S L     +++Q+++ I  S   LL ++NDIL
Sbjct: 380 KSRFLANMSHEIRTPMTAILGYSESLRESNLS--REERNQFIDIIVRSGRHLLTIINDIL 437

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           DL+ ++A  +++ +  I L +L+ +++  I  + HE  + + +     L   F +D  RL
Sbjct: 438 DLSKIEAEKIEIEHMQISLPNLIEDLRSHIGMRAHEKGLTLDITPKLPLPAHFESDPTRL 497

Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            QI   + +NA  F+ KGS    +   +D     F+V + G  +     K +F  FV   
Sbjct: 498 KQILFNLGANATKFTHKGSIHFGVSYEKDTNLLRFTVTDTGIGLGPGELKKIFEPFVQAD 557

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R   G GLGL I     ++ GG +++ SS    +  +  I
Sbjct: 558 SSTTRQYGGTGLGLYISRQLAHMLGGELTVDSSQGEGSRFSVTI 601


>gi|254230528|ref|ZP_04923899.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262393275|ref|YP_003285129.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
 gi|151936953|gb|EDN55840.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262336869|gb|ACY50664.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
          Length = 932

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  V ++    +GD     F V++ G
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CR 787
             
Sbjct: 512 FT 513


>gi|302504154|ref|XP_003014036.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
 gi|291177603|gb|EFE33396.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
          Length = 2418

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+T +IG ++LLK +K   L+ KQ  YV
Sbjct: 1876 AEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATK---LDPKQDVYV 1932

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     E  +   
Sbjct: 1933 ESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTI 1992

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
               D        + D  RL QIF  +LSN+  F+  GS V ++A  +            V
Sbjct: 1993 EDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIVEEDTPEKIRVTCKV 2051

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I E+    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 2052 ADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGE 2111

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2112 GTTVTFTL 2119


>gi|67924970|ref|ZP_00518357.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67853183|gb|EAM48555.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 568

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 119/255 (46%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+          +Q +++E 
Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLILDGMADDA-EEQQEFLEE 364

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILD+A ++AG M L    + L +L   V      +    ++  +  
Sbjct: 365 AHKSALHLLNLINDILDIAKIEAGKMDLELGAVELAELFQAVDNFTLPQAQRKHLEFRSK 424

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDN------GDFI 720
               L   V   + QRLLQ+   ++SNA+ F+ +GS V    I+K    +      G   
Sbjct: 425 LPSTLTPIVVYGNYQRLLQVMLNLVSNAIKFTHEGSIVVNAEIVKKKIHHQNQEFPGHVK 484

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  D    +F +FV           G GLGL+I +  +   GG V   S  
Sbjct: 485 VSVTDTGIGVSLDKQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLVEAMGGQVEFYSMG 544

Query: 779 EG-VTTINCRIPSKE 792
           EG  +T+   +P ++
Sbjct: 545 EGLGSTVTFTVPLEQ 559


>gi|296387332|ref|ZP_06876831.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 1417

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 200/521 (38%), Gaps = 38/521 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +   +         +L   + V+I   D++  +   N     +       +    S  
Sbjct: 479 AERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS-P 537

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVT------- 405
            LL   R      ++L  + ++  +     + +ET + T+   +G  L V ++       
Sbjct: 538 TLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRDE 597

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +    G + +  ++T   + E +            D    G+  +         N     
Sbjct: 598 AGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMCE 657

Query: 466 LWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSL 514
           L+                    H  ++  T +      +G   +  I      D   + +
Sbjct: 658 LYGQPLALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGGIRFI 717

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   ++  D+       PL   Q     +++T   + +  L E  E    A   K+SF+ 
Sbjct: 718 QAGAQVERDA----DGNPL---QVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLA 770

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  ++G   L + +    LN +Q  Y++  S+++T LL L+NDILD + ++
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQT---DLNERQRDYLDKASSAATSLLGLLNDILDYSKIE 827

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG + L      L  L+ ++   ++    + ++ +    D +L  + V DR RL QI   
Sbjct: 828 AGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILIN 887

Query: 694 ILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +  NA+ F+++G   V L+    +   +     V + G  I  +  + +F  F       
Sbjct: 888 LAGNALKFTARGHVLVSLRRLAHDAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEAST 947

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL I +  ++L GG + + S+    +     +
Sbjct: 948 SRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWFDL 988



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 91/306 (29%), Gaps = 39/306 (12%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A+   +             I+ N    I     +  +   NR    L+            
Sbjct: 331 ALGRQRRHREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGR-- 388

Query: 352 NDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
              +++ L   +K  E+L+   +  ++     + +   H+D   L    T+  I+   P 
Sbjct: 389 --RVVDLLVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPIL--GPD 444

Query: 410 GGTIW---MFENLTVQVDLETKYNTLVK------------------VQGETIDHLSE-GV 447
           GG +       +++ +   E +   L                    + G  +   SE  +
Sbjct: 445 GGVVGASKTVRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSI 504

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITS 506
                DG I   N     +     + +        + +        +  G + F  ++  
Sbjct: 505 ITLDRDGIISGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVAR 564

Query: 507 FDDERKSLQGTLELLSDS---VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEK 558
            + E    +    L  D     +  S+  L +        +   V+VT+   AER +   
Sbjct: 565 AEQEGAETREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAA 624

Query: 559 NEALRK 564
            + L+ 
Sbjct: 625 RDQLQM 630



 Score = 38.4 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 24/207 (11%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                +           + + ++G+   G DG I   N    +L+   E +       R 
Sbjct: 334 RQRRHREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVG----RR 389

Query: 483 IAATCSRYYNESDGWDLFAAI-----ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +         E++  D+ A I     + SFD  R+   G L    D  +  S I  P+  
Sbjct: 390 VVDLLVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHL---LDVAVTVSPILGPDGG 446

Query: 538 TM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +    T  +++    AE  + E N  L      + +       ELR  L  ++G   L 
Sbjct: 447 VVGASKTVRDISAKKAAEARIRELNTGLEHQIAERTA-------ELRR-LNVLLGSV-LQ 497

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILL 621
             S++  +   +   +   +  +  +L
Sbjct: 498 AASEVSIITLDRDGIISGFNLGAERML 524


>gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli E24377A]
 gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E24377A]
          Length = 949

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 247/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +  +D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNSDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFIGYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMV--------ILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|75907228|ref|YP_321524.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700953|gb|ABA20629.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 646

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 171/427 (40%), Gaps = 28/427 (6%)

Query: 388 HKDTWHLPNGQTLHVIVT-----SNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGET 439
           H+      +G              N  G     +    ++T +   E +  +  +     
Sbjct: 226 HEYRMRHADGGWCWFFSRNSVFMRNSDGSPRQIVGTAFDITARKQAEEELRSSNERFRLA 285

Query: 440 IDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRN-IAATCSRYYNESDGW 497
              ++  +  +    G +  +    R L  + E         +  I      +  E    
Sbjct: 286 AAAVNSLIYEWDIKKGTVTRTEGLTRILGYSVEEATPNIEWWQEQIHPDDQDFLVEQFQN 345

Query: 498 DLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV-----RA 551
                   +F+   R      L +L   +    I    N Q +    + TD        A
Sbjct: 346 PPVNQTHYTFEYRIRHKNNQYLYVLDQGI----ITRDENGQPVRVVGSATDISDRKLAEA 401

Query: 552 ERALTEKNEALRKA-----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           ER    + E L +A     ++ K+ FV  VS++LRSPL  I+G++ LL+T +L    S  
Sbjct: 402 ERDQLLQLEKLARAEAEAANQTKDEFVAMVSHDLRSPLNAILGWSQLLRTRQLD--ESTF 459

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ +E I  ++     L+ D+LD++ +  G ++L +  + L  ++    ++        +
Sbjct: 460 TRALETIERNAQSQSKLLEDLLDMSRILRGKLQLEFCLVELPAIIGVAIETAYPSAKAKD 519

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +K + D  +     D  RLLQ+   +LSNA+ F+     + ++ +  + +   +V + 
Sbjct: 520 IHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYTDSEAHITVIDT 579

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTIN 785
           G  I  +    VF R+     + ++ G+GLGL+I    I LHGG + ++S  +   TT  
Sbjct: 580 GIGIKSEFLPYVFERYRQADCQHKQHGLGLGLAIARYLIELHGGAIHVNSLGEGQGTTFT 639

Query: 786 CRIPSKE 792
            ++P  +
Sbjct: 640 IKLPLHQ 646


>gi|317483952|ref|ZP_07942889.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924826|gb|EFV45975.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 800

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 159/396 (40%), Gaps = 31/396 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-----PDGRIKL--SNPAFRSLW 467
           +F ++T  V  +T+       +  T D+L   +A F         R     +N  F   +
Sbjct: 129 VFTDITDLVQAQTE-------KSITYDNLPGFIAKFQIRAGCAQERFTFLDANDRFIDFF 181

Query: 468 KTE-----ENRLSPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELL 521
                      L      RN  A    Y    +G  + F     +  ++   LQ   + +
Sbjct: 182 GVRAAGDAPYSLVNWDSARNQQALNEHYPAMREGKPVHFTVQAKTLQNDDAWLQLNGDCI 241

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYE 579
                +   + +    T +T   V      ER+  L    E   +A+  K+ F+  +S++
Sbjct: 242 DVIQGDPVYLFIYIDITDITEQRVLQKKLEERSELLRNALEMAERANRAKSDFLSRMSHD 301

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  I+G   + K S       +    ++ +  S+  LL L+NDILD++ +++G   
Sbjct: 302 IRTPMNAIMGMLSIAKESWDDP--DRVRDCLDKVENSARFLLALINDILDMSKIESGKAI 359

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
           L             +      +  +  +R +V+    L   +V D  +L QI   +L NA
Sbjct: 360 LKKKAFDFAAFTRNLAAMFYGQAEKKQVRFQVLLGRSLAEAYVGDELKLNQILINLLGNA 419

Query: 699 MDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRR 752
           + F+  G +V+L    D       + +F+V + G  + +   K +F  F  ++  R  + 
Sbjct: 420 IKFTEPGGSVLLSVQEDKRSNKASELVFTVTDTGIGMEKSFLKKIFEPFEQDSQQRSNQG 479

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGLSI E +  +  G + + S+    +T   RI
Sbjct: 480 GSGLGLSIAEKYARMMNGGIEVDSTPGKGSTFVARI 515


>gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 693

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 159/402 (39%), Gaps = 29/402 (7%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVD--LETKYNTLVKVQGETID---HLSEGVAVFGPDGR 455
            V+    P      +  +   ++   +  +   L+  Q    D    + +          
Sbjct: 163 RVLDRLRPLVERAIIDIDYRERLQSLVTARTQELIHSQQRFKDFAKTVGDWFWEIDTAFN 222

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
               +     L     ++ +     R+      +   + +  + F        +    L 
Sbjct: 223 FTYISSP--QLAGHMIDQTNILDIFRDQPELKQKLKEKCEQQEPFEDFEWQLPESEGGL- 279

Query: 516 GTLELLSDSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKN 570
                     + ++  P  +          T  N+T   +    L E  +    A+  K+
Sbjct: 280 ---------WITFTGTPYFDKNDHFLGYRGTSKNITARKKRLFDLQEARKQAESANSAKS 330

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+E+R+PL  ++G  D L  S    L  +Q ++V+ +  S+ +LL ++NDILDL
Sbjct: 331 QFLAMMSHEIRTPLNAVLGLMDTLADS---GLRQEQMEWVKQMDQSAQLLLTIINDILDL 387

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + +++G  +L    + + D +N V   ++ +    NI ++   D  + S +  D+ R+ Q
Sbjct: 388 SKIESGNFELTNGEMSITDCINLVVNQLSEQARNKNILLQAEIDQTVPSVICGDKNRIAQ 447

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           I   ++ NA+ F+S GS V + A R   +   SV + G  I +    ++F+ F       
Sbjct: 448 IMFNLIGNAIKFTSTGS-VRVLARRVEDNIEISVIDTGIGIAKQAQNNLFHPFHQADSSI 506

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +  G GLGL+I +  I+   G + + SS    +     +P
Sbjct: 507 TRKYGGTGLGLAISKHLISKMNGKIELDSSLGIGSCFKVILP 548


>gi|260462410|ref|ZP_05810618.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259031904|gb|EEW33172.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 602

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/366 (24%), Positives = 163/366 (44%), Gaps = 13/366 (3%)

Query: 437 GETIDHLSEGVAV-FGPDGRIKLSNPAFRSLWKTEENRLS-----PGTHIRNIAATCSRY 490
           G+ ++ + + V +     G +  ++   R+L K     LS        H+ +  A  S  
Sbjct: 203 GDRLEDIIDAVVLRVARHGEVLDASARARTLLKLPPELLSGTGFFDRVHLSDRVAYLSAL 262

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VNVT 546
            +  DG       +     +  + QG   L++D+   +++  +   +    F        
Sbjct: 263 ADMRDGALSRRLELRIRLPQNGNGQGDNRLMADNYRPFALELVRGEEQGDVFTLVLREND 322

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605
           ++ R    L + NEA   A+  K  F+  VS+ELR+PL  IIGF+D+L     G+  + +
Sbjct: 323 ETARLREELAQANEAAAAAEVAKGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPR 382

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +YV  +  S   LL +V  ILD++ +++G            + +   +  +  +    
Sbjct: 383 QKEYVGLVRDSGQHLLAVVTSILDVSRIESGAYATEPEPFRFMEAVEMCQSMMRLQAQAK 442

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           NI ++       G   ADR+ + QI   ++SNA+ F+  G  V++ A R      F V++
Sbjct: 443 NIDLQTQIAPDAGDINADRRAVQQILINLVSNAVKFTPDGGDVVVGAKRIGSRLHFWVRD 502

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E+   ++   F  + N +  +  G GLGLS+V+  + LH G +SI S     TT
Sbjct: 503 TGIGIAEEDFANLGKPFMQIQNDYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTT 562

Query: 784 INCRIP 789
           +   +P
Sbjct: 563 VTISLP 568


>gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 10/261 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N+  M     + +  R    L +  EA       K++F+ + S+E+R+P+  IIG  +LL
Sbjct: 341 NSDRMKLAGRLDEQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLL 400

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L+ KQ ++V  +  S+  L+ ++NDILD + +DAG   L      L  +LN  
Sbjct: 401 LGTR---LSDKQLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMT 457

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
            + +     +  + + ++    +  F+  D  RL Q+ + ++ NA+ F+ +G   V +  
Sbjct: 458 LRPLTIACQQKGVELILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDF 517

Query: 713 ARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
             ++       FSVK+ G  +     + +F  F        RR  G GLGL+I    I L
Sbjct: 518 LSESDGVAYIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIEL 577

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG +S+ S     +     I
Sbjct: 578 MGGQLSVESILGKGSEFFFEI 598


>gi|218889603|ref|YP_002438467.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218769826|emb|CAW25586.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 1417

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 200/521 (38%), Gaps = 38/521 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +   +         +L   + V+I   D++  +   N     +       +    S  
Sbjct: 479 AERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS-P 537

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVT------- 405
            LL   R      ++L  + ++  +     + +ET + T+   +G  L V ++       
Sbjct: 538 TLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRDE 597

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +    G + +  ++T   + E +            D    G+  +         N     
Sbjct: 598 AGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMCE 657

Query: 466 LWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSL 514
           L+                    H  ++  T +      +G   +  I      D   + +
Sbjct: 658 LYGQPLALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGGIRFI 717

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   ++  D+       PL   Q     +++T   + +  L E  E    A   K+SF+ 
Sbjct: 718 QAGAQVERDA----DGNPL---QVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLA 770

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  ++G   L + +    LN +Q  Y++  S+++T LL L+NDILD + ++
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQT---DLNERQRDYLDKASSAATSLLGLLNDILDYSKIE 827

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG + L      L  L+ ++   ++    + ++ +    D +L  + V DR RL QI   
Sbjct: 828 AGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILIN 887

Query: 694 ILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +  NA+ F+++G   V L+    +   +     V + G  I  +  + +F  F       
Sbjct: 888 LAGNALKFTARGHVLVSLRRLAHDAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEAST 947

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL I +  ++L GG + + S+    +     +
Sbjct: 948 SRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWFDL 988


>gi|83954602|ref|ZP_00963313.1| sensory transduction histidine kinase [Sulfitobacter sp. NAS-14.1]
 gi|83840886|gb|EAP80057.1| sensory transduction histidine kinase [Sulfitobacter sp. NAS-14.1]
          Length = 798

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/510 (19%), Positives = 185/510 (36%), Gaps = 42/510 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             K   +  Q      IL N  + I    Q+  +   N +  +        +A     D 
Sbjct: 311 ADKTRELETQHQEKRSILENAMLPIISVRQSGEILHLNDAARQ------HLIAAGHRKDA 364

Query: 355 LLEFLRSANKLPEQLNWKTW--------KENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
             +F++    LPE    +               +  ++ E  K+TW   + +T       
Sbjct: 365 TGDFVQD--LLPEIDIHRADGGAKVVVPPHKGTTESRTLEVEKNTWLTADAET------- 415

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                   M  ++T       K     +     +     GV     +    + +  +R +
Sbjct: 416 ----RITLMLRDITDSERRTLKIAETEQRWSLALSSAHIGVFDIDLENGTSVVSDTWRDI 471

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                +      +   +      + +++           +   +R   +  + +  D+  
Sbjct: 472 MHHPADPACQNPYYGKMQHV---HPDDAAVVKKIELACLNGMTDRAEARFRIRVGQDNW- 527

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPL 584
                     ++    V    + RA R L          K +++K+ FV  VS+ELR+PL
Sbjct: 528 -------RWIKSDAVVVERAKNGRALRMLGIQIDITESNKLEQMKHDFVATVSHELRTPL 580

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T+I G   LL+       ++   + V+  +A+   L+ LVNDILD+  ++AG M +    
Sbjct: 581 TSIKGALGLLEAQTQDDPDAGAVRLVQIATANCDRLVALVNDILDMEKINAGSMTVVPKP 640

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L D++    + +     E  + I V +       + D+ R++Q+ + +LSNA  F+  
Sbjct: 641 EKLGDIVTLAAEQVEPYASEWKVEIDVDTPDPDHHVLTDKNRIMQVLTNLLSNACKFAYP 700

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
            + V +  A        SV N G+ I ++  + +F  F     ++  QR G GLGL+I  
Sbjct: 701 ETAVTVTTAPVGDMTKISVTNLGNGISKEFRERIFQPFSQAEASNTRQRGGTGLGLNISR 760

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +   GG +   S     T      PS E
Sbjct: 761 HLVEAMGGEIGFDSVPGEETVFWFTCPSTE 790


>gi|327355389|gb|EGE84246.1| DRK1 histidine kinase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1287

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 697 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 754

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 755 SLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSLAYQVDSSVP 814

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
            +V  D  RL QI   ++ NA+ F+  G  V L  +R + +        F FSV + G  
Sbjct: 815 DYVTGDPFRLRQIILNLVGNAIKFTEHGE-VKLAISRSDREECKDNEYAFEFSVSDTGIG 873

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     ++ +  
Sbjct: 874 IEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFT 933


>gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC
           74-1112]
          Length = 787

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 101/498 (20%), Positives = 190/498 (38%), Gaps = 67/498 (13%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND--ELLEFLRSANKL 365
            L + + I D+N        + + L         D  ++         E    L     L
Sbjct: 77  TLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFGYTEGFRELVLKKNL 130

Query: 366 PEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           P     + +    + +    +          + N   L+V+      G  ++    +  +
Sbjct: 131 PPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA-----GAALFTLARMYER 177

Query: 423 V------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLS 475
                      +     +   + +     G+ +    DG   LSN     L  T  N L+
Sbjct: 178 RIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN----ELAHTYLNMLT 233

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                R     C +  N       F  ++TS +    +LQ +           +I     
Sbjct: 234 HEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI----- 278

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                  V+V+   + E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+
Sbjct: 279 ----CVLVDVSSRAKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQ 334

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N + 
Sbjct: 335 TKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHIT 391

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +    +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L    
Sbjct: 392 ANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVRA 450

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
           D       V++ G  IP      +F+ F       +   +G GLGL+I E  I++  G +
Sbjct: 451 DGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDI 510

Query: 773 SISSSDEGVTTINCRIPS 790
           S+ S     +    RIP 
Sbjct: 511 SVDSEPGMGSQFTVRIPL 528


>gi|225562695|gb|EEH10974.1| DRK1 histidine kinase [Ajellomyces capsulatus G186AR]
          Length = 1288

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 698 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 755

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 756 SLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSLAYQVDSSVP 815

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSI 730
            +V  D  RL QI   ++ NA+ F+  G   +  +  D  +       F FSV + G  I
Sbjct: 816 DYVTGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSDREECKDNEYAFEFSVSDTGIGI 875

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     ++ +  
Sbjct: 876 EEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFT 934


>gi|323694952|ref|ZP_08109102.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323501042|gb|EGB16954.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1032

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                    + K  F+  +S+E+R+P+  I+G T  +  S  G+   +  + +E +  SS
Sbjct: 641 MKARADAVSQAKTDFLSRMSHEIRTPMNAIVGMT-AIARSAAGN-KEQVLKCLEKLDNSS 698

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+LVNDILD++ +++G M+LN + ++L+  L+ + + +  +     +   + +D + 
Sbjct: 699 KYLLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSIDEMVRMQAEAKGLSFTIQNDCRT 758

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIP 731
                AD+ RL Q+   ++ NA+ F+  G ++ L       +       FS+ + G  I 
Sbjct: 759 ERHLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHPVKEEDTGLALRFSLADTGIGIS 818

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCR 787
            ++  S+FN F   A     Q  G GLGL+I    + + GG + + S     +       
Sbjct: 819 PEVLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQMMGGVLDVKSEPGRGSEFFFTVS 878

Query: 788 IPSKE 792
           +P  E
Sbjct: 879 LPYSE 883


>gi|226226406|ref|YP_002760512.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089597|dbj|BAH38042.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 1005

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 106/674 (15%), Positives = 231/674 (34%), Gaps = 58/674 (8%)

Query: 156 EGRVSGSCAFLRILS-LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            G  +G  A +  L  +  +  ELA       +L            S+   V   D +G+
Sbjct: 200 SGVFAGLAALVAFLGFVIVLRRELAARGQAADQLVAERERLDTTLRSIGDAVITTDTSGN 259

Query: 215 ILWANISYKKNTETEGIVFQ--------KAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
           I+  N   ++ T    +           +   +      E   + +++            
Sbjct: 260 IITMNALAEQLTGLPAMAAVGKPLEEVYRIPFDPSASHAEHPVRAVLAGRRARTELHSLT 319

Query: 267 STLEHGNNKSYK------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH-NLTVA- 318
                G  +         +       G   +  DVS++     ++ +  + L   L  A 
Sbjct: 320 LRAHDGTARPIDQTAAAIVTPSGERLGGVLVFRDVSEQQAAQQRIRYGQQRLQLALRSAR 379

Query: 319 IAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           +  FD  ++      + +  +++ +             +L  L  A  +    +     E
Sbjct: 380 LVSFDIARDTRELTLSENGTDVFGLAP---------GHVLRTLDDALAIVHPEDLPAVIE 430

Query: 377 NIFSVYKSSE------------THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
            + SV +  E                 W    G+   V +T   +     +  ++T +  
Sbjct: 431 ALQSVDEPGESFLVACRIRREVPGDIGWVEVRGE---VQLTREGKKLLTGLVLDVTARRA 487

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           +E       +      D     + +   DG I   N  +          L+       + 
Sbjct: 488 VEMSLRESEERFRSMADSAPVMIWMAASDGSITYVNQRWHDFTGIGSVDLATLVPFARVH 547

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTM 539
                  +  D    F   + +    R+ L+      S   +  +  P           +
Sbjct: 548 PD-----DREDQLRYFHEALEAHRTFRQELRMRRHDGSYRWVINTATPRFGDDGEFLGFI 602

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            + +++ D  + E  L      L  AD  K+ F+  +++ELR+PL  +    ++L+ +  
Sbjct: 603 GSVLDIEDRKQLENELRSLASDLSDADRRKDEFLATLAHELRNPLAPLRNGVEILRLAAP 662

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                ++++    +      L+ LV+D+LD++ + +G ++L +  + L   L    ++  
Sbjct: 663 SPEIIERTR--GMMERQLGQLVRLVDDLLDVSRITSGKLELRHDLLTLQIKLTNAAEASG 720

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             +   + R+ + +         D  RL QIF+ +L NA  +S   + + +     +   
Sbjct: 721 PTLTARSQRLHINAPDAPVVVEGDAARLSQIFANLLDNASKYSPPNTDIHVTITTRDDQA 780

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I +V++ G  IP  +   VF+ F            G+G+GL++V+  + +HGG ++  S 
Sbjct: 781 IVTVQDAGQGIPRHLLHKVFDLFAQVDRTLERTTGGLGIGLTLVKRLVEMHGGSITADSP 840

Query: 778 DE-GVTTINCRIPS 790
            E   +T    +P 
Sbjct: 841 GESQGSTFTVVLPL 854


>gi|165920276|ref|ZP_02219548.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 334]
 gi|165916832|gb|EDR35436.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 334]
          Length = 630

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 99/508 (19%), Positives = 201/508 (39%), Gaps = 49/508 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           ++  +  Q      ++      + I + +  +   N +  +L+              +  
Sbjct: 11  RKKLMESQQAQFEHLIDRADDLVVIVNPDYSIIDLNNAAEQLY--------------QCK 56

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--GTIW 414
                   L E    + W+     +       + +W         V+      G  G + 
Sbjct: 57  REAVIGRNLFEIAVEEEWQLPASLLTHRRSIKRISWS--------VVSLPPRYGQKGYML 108

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             + ++  V+    +          + ++ + +     +      N  F  L   E    
Sbjct: 109 TGQVISKSVNASQIF------LENILYNIPQYILWKDRNFVYLGCNHNFAKLVGFETPES 162

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
             G    ++    S+  N     D+         D  +SL   L    + V   S +PL 
Sbjct: 163 IIGKTDFDL--WRSQGANSIRPTDVEVLEGKQLVDVEQSLS--LPNGKEGVFLISKVPLR 218

Query: 535 NAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + +      ++   ++T+  + E+ L E       +D  K+ F+ ++S++ R+P+  I+G
Sbjct: 219 DERNEIIGILVVGTDITERKQNEQKLIEAKLKAELSDRAKSEFIANISHDFRTPINGILG 278

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              +    +      KQ   +  +SAS+ +LL LV DILD A ++ G ++L YST  L  
Sbjct: 279 IAQIFNMHEH---TKKQEPLINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQ 335

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           L+  + ++ + +  +  I+I V  D  L  S V++   + +IF  ++ NA+ F+ KG  +
Sbjct: 336 LVTFLVKTFSFQTQQKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKG-QI 394

Query: 709 ILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
            +    +          VK+ G  IP+D   ++F+RF      +  +  G+GLGLSI++ 
Sbjct: 395 DVTVNLEGNKPAMLKILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKR 454

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++  GG V +SS +   +T    IP +
Sbjct: 455 LVDNLGGEVHVSSIENEGSTFTLTIPCE 482


>gi|115391625|ref|XP_001213317.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624]
 gi|114194241|gb|EAU35941.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624]
          Length = 2330

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+  +IG ++LLK +K   LN +Q +YV
Sbjct: 1865 AEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGTK---LNREQDEYV 1921

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1922 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGLETI 1981

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN-GDFIFS--VK 724
               D      V   D  RL QIF  +LSN+  F+ KGS TV  +  R+  G       V 
Sbjct: 1982 EDLDKVPPDLVVFGDPVRLHQIFMNLLSNSYKFTPKGSVTVAARVTREGKGRVRLECAVT 2041

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F            G GLGLSI ++ I  + GG + + S+    
Sbjct: 2042 DTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGKG 2101

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2102 TTVTFHL 2108


>gi|46123237|ref|XP_386172.1| hypothetical protein FG05996.1 [Gibberella zeae PH-1]
          Length = 2544

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 18/252 (7%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +   +A + K+ F+ +VS+ELR+PL  +IG ++LL+ S+   LN  Q +  
Sbjct: 1904 AEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSE---LNRDQLEMA 1960

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI----ATKMHENN 666
            + I  S+ +LL ++NDILD + ++A  MKL        D++ EV +++      K  + N
Sbjct: 1961 DSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKTSKKN 2020

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIF 721
            ++I    +        D  RL Q+   ++ N++ F+  GS + + A      +++    F
Sbjct: 2021 VKIVQSINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGS-ITIGARLDKETQEHATLTF 2079

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSD 778
             V++ G  IP      +F  F         +  G GLGLSI +S I  +  G + + S +
Sbjct: 2080 WVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEE 2139

Query: 779  EGVTT--INCRI 788
               TT       
Sbjct: 2140 NVGTTAWFTVTF 2151


>gi|298242060|ref|ZP_06965867.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555114|gb|EFH88978.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 796

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 124/728 (17%), Positives = 256/728 (35%), Gaps = 84/728 (11%)

Query: 131 TEKLR--KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
              LR  K  + F+ V + ++   I++   +S      R  ++ G  +++A    + ++ 
Sbjct: 72  LATLRQGKRIEHFETVRQRKDGTRIEVSLSIS--PVKDRNGTIVGA-TKIARDVSERRQA 128

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF---- 244
                    L +S D  +  +   G I   N + +      G   Q+A+G+   L     
Sbjct: 129 ERAHLHLAALVESADTPIIGKTSEGIITSWNRAAQHL---YGYSAQEAVGQPITLIFPVD 185

Query: 245 -KEEIKKRMISSSALEK-NFCETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVS 296
            ++E    M      E+    ETV   + G      +             G + IA D++
Sbjct: 186 RQDEFITIMERIRQGERVELYETVRQRKDGTRVPVSVAVSPIYDHAGLLIGASDIAHDIT 245

Query: 297 KEITVNDQLTHTYEILHNLT---------VAIAIFDQNRY-----LQFHNRS----FVEL 338
           +   +  Q     ++   L           A+A     R      ++  N +      EL
Sbjct: 246 ERKRIEAQEQMLAQLSQVLASTLDYQETLTAVAHLAVPRIADWCTIELVNAAGHLELAEL 305

Query: 339 WEIDLAFLATNPSNDE-----------LLEFLRSAN--KLPEQLN----WKTWKENIFSV 381
             ID   +    +  E           + + LRS +    PE  +      +  E   ++
Sbjct: 306 AHIDPEQVRWARTLCERFPADPDAQRGVAQVLRSGHAELYPEITDDLLVEASRNEEELAL 365

Query: 382 YKSSETHKDTW--HLPNGQTLHVIVTSNPRGGTIWMFENLT-------------VQVDLE 426
            +               G+   V+  +    G  +   +L                  L 
Sbjct: 366 ARQIGFTSAMLVPLTARGKITGVLSLATTASGRHYNAFDLALAEEVGRRIGLALENARLY 425

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +           +  +++G+ V+ P+ R+  +N     +                +  T
Sbjct: 426 REVQQSRDQFDIILQGVADGIIVYTPNNRVLYANEVAAQMSGVTLFHELLDQPDEILLTT 485

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNV 545
                 +     L A          +  Q TL +  ++  ++    P+      +  V  
Sbjct: 486 SPLIDEQGHALSLEALPHCRVLAGAQEAQATLRVQGTERWVQIISRPVRTQSGAVAMVIS 545

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                 ER          + +  K+ F+   S+EL++P+T++ GFT +L+       + +
Sbjct: 546 IWHDITER---------MRVEHRKDEFISMASHELKTPVTSLKGFTHVLQRRLTKREDEQ 596

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y+  + A    L  L++D+LD++ + AG + L      L++LLNE+  ++      +
Sbjct: 597 GLSYLARMDAQLDKLTRLISDLLDISRMQAGKLALRIEAFELDELLNEIVDNVQATTTSH 656

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +RI+  +  +    + D  RL Q+F  +L+NA+ +S +   +I+    +    I SV++
Sbjct: 657 QLRIEGHTGAQ---VIGDPDRLGQVFINLLTNAIKYSPEAEHIIIHRFHEGKQVIISVQD 713

Query: 726 NGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I +     +F RF           G+G+GL +    ++ H G + + S     +  
Sbjct: 714 FGIGIDQSHHDRIFERFYQVGPEEKTYPGLGIGLYLAREIVSRHKGRIWVESRKGAGSAF 773

Query: 785 NCRIPSKE 792
              +P  E
Sbjct: 774 FVALPQME 781



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 102/356 (28%), Gaps = 49/356 (13%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR----- 241
           +    + +++ +  S D  +  +   G I   N +        G   Q+AIG+S      
Sbjct: 5   QPLEELGIYEAIIASSDDAIVSKTLEGIITSWNPAAVSLF---GYTPQEAIGQSVLLIIP 61

Query: 242 -KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAID 294
            +L  EE +              ETV   + G      +             G   IA D
Sbjct: 62  EELHAEEKEILATLRQGKRIEHFETVRQRKDGTRIEVSLSISPVKDRNGTIVGATKIARD 121

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           VS+         H   ++ +    I        +   NR+   L+          P    
Sbjct: 122 VSERRQAERAHLHLAALVESADTPIIGKTSEGIITSWNRAAQHLYGYSAQEAVGQPITLI 181

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSET---HKDTWHLPNGQTLHVIVTSNPRGG 411
                         ++ +     I    +  E    ++      +G  + V V  +P   
Sbjct: 182 F------------PVDRQDEFITIMERIRQGERVELYETVRQRKDGTRVPVSVAVSPIYD 229

Query: 412 TIWMF-------ENLTVQVDLETKYN---TLVKVQGETIDH-------LSEGVAVFGPDG 454
              +         ++T +  +E +      L +V   T+D+           V       
Sbjct: 230 HAGLLIGASDIAHDITERKRIEAQEQMLAQLSQVLASTLDYQETLTAVAHLAVPRIADWC 289

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
            I+L N A     +  E        +R     C R+  + D     A ++ S   E
Sbjct: 290 TIELVNAA--GHLELAELAHIDPEQVRWARTLCERFPADPDAQRGVAQVLRSGHAE 343


>gi|260846023|ref|YP_003223801.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
 gi|257761170|dbj|BAI32667.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
          Length = 778

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 150/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +   +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLCFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|121710420|ref|XP_001272826.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus clavatus NRRL 1]
 gi|119400976|gb|EAW11400.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus clavatus NRRL 1]
          Length = 1341

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 756 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 813

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 814 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 873

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              + D  RL QI   ++ NA+ F+  G  V L   + + +        F FSV + G  
Sbjct: 874 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VKLTIRKSDREQCAPNEYAFEFSVSDTGIG 932

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 933 IEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 992


>gi|329851559|ref|ZP_08266316.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840405|gb|EGF89977.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 873

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 122/680 (17%), Positives = 252/680 (37%), Gaps = 85/680 (12%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +  +    A+   K + +  HISV   +F+         D    + + N   +  T    
Sbjct: 212 ITALRRRNADLQGKYRSIITHISVV--IFEC------RLDDNLTVQFINSYIETLTGYPS 263

Query: 231 IVFQKAIGE---------SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK---SYK 278
             F +              R    + +++++ ++   E  F     T+  G ++     +
Sbjct: 264 SDFVRGKVRHFADLIPETERPAVLQGVRRQLDTADRFEIEFRLQPRTVAGGGSRRPVWVR 323

Query: 279 I------VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA----IFDQNRYL 328
           +           +    G   D++       ++  + +    L  +      I D +   
Sbjct: 324 VNGHVKARETDGAITIEGFMQDITLRKATEAKVAESEKQFRALADSTPNLLWITDLDGDC 383

Query: 329 QFHNRSFVELWE------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            F NR++++          D  +LA         +      K  E +  +   +  F + 
Sbjct: 384 VFFNRTWLDFRGQALNDETDAGWLAHVHHE----DVAACTEKFSEGVAQQAAFQCWFRLR 439

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           ++   ++  W L N       + S  R  G I    ++T +   ET+     +       
Sbjct: 440 RADGDYR--WMLANAT---PRLNSAGRCEGFILAATDITDRKAFETRLKRTAQHLELFFR 494

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H    +AVF  + R  + +  +RS +   ++    G  +  +A   + Y+++     L  
Sbjct: 495 HTPAAIAVFNIELRHLMVSERWRSDFGLYDSD-PIGRTLYQVAPAQAEYWHDEHRRCLSG 553

Query: 502 AIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNAQTMLTFVNVTD----SVRAERA 554
            I+T+         G L  +    +  + Y+  P      ++  +  T+      R E  
Sbjct: 554 EIVTN--------SGALVPMPGGGEEWISYAFHPWYEDDMVMGIIMFTEVITERKRLEGE 605

Query: 555 LTEK------------------NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--- 593
           LT+                    E    +   K+ F+ ++S+ELR+P+  I+ +  +   
Sbjct: 606 LTQHRDNLQSLVEAQTSDLRQAKEQAEASVRAKSEFLSNMSHELRTPMHAILNYAAMGEK 665

Query: 594 -LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L     G    K ++Y+  I  + T LL L+N++LDLA +++G M  + +   L  ++ 
Sbjct: 666 RLTGLPSGDGVDKLTKYLGNIRTAGTRLLGLLNNLLDLAKLESGKMTFDLAPTDLRGVVE 725

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +    + + +    + + V  +        DR RL+Q+   +LSNA+ FS +G  V +  
Sbjct: 726 QSCMELDSLVKARQLHLDVEWNAADTVITVDRGRLIQVMVNLLSNAIKFSPEGGNVSVAV 785

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGH 771
             D    I +V ++G  +PE   + +F  FV ++       G GLGLSI    +  HGG 
Sbjct: 786 EEDRYGLICTVSDDGPGVPEGELEHIFETFVQSSETRSGAGGTGLGLSICRQIVGAHGGR 845

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +   +       +   +P +
Sbjct: 846 IWAENLHPKGARLAFTLPRE 865


>gi|115442698|ref|XP_001218156.1| hypothetical protein ATEG_09534 [Aspergillus terreus NIH2624]
 gi|114188025|gb|EAU29725.1| hypothetical protein ATEG_09534 [Aspergillus terreus NIH2624]
          Length = 1101

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 660 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 717

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 718 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 777

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              + D  RL QI   ++ NA+ F+  G  V L   + + +        F FSV + G  
Sbjct: 778 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VKLTIRKSDREQCAANEYAFEFSVSDTGIG 836

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 837 IEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 896


>gi|327251301|gb|EGE62990.1| aerobic respiration control sensor protein arcB [Escherichia coli
           STEC_7v]
          Length = 778

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRYNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.1 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRYNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|269960017|ref|ZP_06174394.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835316|gb|EEZ89398.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1200

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 159/372 (42%), Gaps = 18/372 (4%)

Query: 422 QVDLETKYN-TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           + + ETK      +     +DH+   + +   + +  L+N  + S+ +      +     
Sbjct: 530 RKEYETKVRQRQNRWLSSVLDHIPHKILISDDNHQQILANKPYLSMLQRCNTDSNITDEQ 589

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R +    ++  +     ++   + +      +  + +L    +               M 
Sbjct: 590 RELVLKLTKDTDYPVPDEIVTTLCSLGKKHYRVRRQSLLHPEEGT----------RFHMT 639

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F ++T+  + E AL   N    +A E +  F+  +S+ELR+P+  ++G  +LL+     
Sbjct: 640 VFDDITELKKKECALKASNLKAMQAIEAREHFLAVISHELRTPIAAMLGLMELLEQDL-- 697

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +  + ++    S+  L   VNDILD + VDA  ++L+  +  + + L    +S   
Sbjct: 698 -DRPESKELLKSAMLSAERLQLHVNDILDFSKVDANQLQLDVHSGNVYEELGSSLRSFEK 756

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + +  +  +V       + V  D  R+ QI + +LSNA+ F+ KG  + +       + 
Sbjct: 757 AVEQKALAFEVNWQPTPYALVNLDWLRVNQIINNLLSNAVKFTDKG-KISVNIHVCANEL 815

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           +FSV + G  + +    ++F  FV       RR  G GLG+SIV+  +++  G + +SS 
Sbjct: 816 VFSVHDTGCGMSKAQLDALFQPFVQGDKSISRRFGGTGLGMSIVKKLVDIMTGTIEVSSK 875

Query: 778 DEGVTTINCRIP 789
               T I  R+P
Sbjct: 876 QGKGTEITVRLP 887



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 24/165 (14%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +      Q      +L ++   I I D N      N+ ++ +       L    ++  + 
Sbjct: 534 ETKVRQRQNRWLSSVLDHIPHKILISDDNHQQILANKPYLSM-------LQRCNTDSNIT 586

Query: 357 EFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRGGT- 412
           +  R    KL +  ++              +    T      +   V   S  +P  GT 
Sbjct: 587 DEQRELVLKLTKDTDYPV-----------PDEIVTTLCSLGKKHYRVRRQSLLHPEEGTR 635

Query: 413 --IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
             + +F+++T     E           + I+     +AV   + R
Sbjct: 636 FHMTVFDDITELKKKECALKASNLKAMQAIEAREHFLAVISHELR 680


>gi|229078308|ref|ZP_04210872.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
 gi|228704983|gb|EEL57405.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
          Length = 883

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 465 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 705 SNVGEGSTFTVYIP 718


>gi|166366349|ref|YP_001658622.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166088722|dbj|BAG03430.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 665

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 164/403 (40%), Gaps = 25/403 (6%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   +D L    ++G  +   + ++ L NPA R
Sbjct: 247 GELILSFNEMAEKLERYEEQNIEEMTAEKAKLDTLMSTIADGAILLDTNFQLLLINPAAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++  E+  +     +    +  +    +          +   +   ++      ++   
Sbjct: 307 EIFGWEDREIIGQNVLHLFPSELTVRLTKPLYQIAAGETLQPEESANQNHHPKNAVIDQE 366

Query: 525 VLEYSIIPL------PNAQTM-----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
              YS          P  +T+       F    ++VR      +      + +E K+ F+
Sbjct: 367 NNNYSPAEFRLSLTNPKTRTIRLLLTQVFDQHRENVRGIAMTLQDITRETELNEAKSQFI 426

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+PL NI  F + L        ++++ +++E  +  +  L  LVND+LDL+ +
Sbjct: 427 SNVSHELRTPLFNIKSFIETLTEFGEDLSDTEKREFLETANHETDRLTRLVNDVLDLSRL 486

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++     N   I +  L+ +  ++      +  + +    +  L   +     LLQ+ + 
Sbjct: 487 ESSR-NYNLDAIDIGQLIEQTLRTYQLNARDKGLELSSEIEANLLPILGHYDLLLQVLTN 545

Query: 694 ILSNAMDFSSKGSTVILKAA-------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ N++ F+  G  V+++A        ++       V + G  I  +   ++F+RF    
Sbjct: 546 LVGNSLKFTPAGGKVVIRAYKISRDNPQETPKIRVEVSDTGIGIDAEDQSAIFDRFYRVE 605

Query: 747 HRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +R     G GLGLSIV++ I  H   +++ S     TT    +
Sbjct: 606 NRVHTLEGTGLGLSIVKNIIEKHYSQINLISEVGIGTTFWFDL 648


>gi|116052146|ref|YP_789010.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587367|gb|ABJ13382.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 1417

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 200/521 (38%), Gaps = 38/521 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +   +         +L   + V+I   D++  +   N     +       +    S  
Sbjct: 479 AERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS-P 537

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVT------- 405
            LL   R      ++L  + ++  +     + +ET + T+   +G  L V ++       
Sbjct: 538 TLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRDE 597

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +    G + +  ++T   + E +            D    G+  +         N     
Sbjct: 598 AGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMCE 657

Query: 466 LWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSL 514
           L+                    H  ++  T +      +G   +  I      D   + +
Sbjct: 658 LYGQPLALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGGIRFI 717

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   ++  D+       PL   Q     +++T   + +  L E  E    A   K+SF+ 
Sbjct: 718 QAGAQVERDA----DGNPL---QVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLA 770

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  ++G   L + +    LN +Q  Y++  S+++T LL L+NDILD + ++
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQT---DLNERQRDYLDKASSAATSLLGLLNDILDYSKIE 827

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG + L      L  L+ ++   ++    + ++ +    D +L  + V DR RL QI   
Sbjct: 828 AGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILIN 887

Query: 694 ILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +  NA+ F+++G   V L+    +   +     V + G  I  +  + +F  F       
Sbjct: 888 LAGNALKFTARGHVLVSLRRLAHDAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEAST 947

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL I +  ++L GG + + S+    +     +
Sbjct: 948 SRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWFDL 988



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 91/306 (29%), Gaps = 39/306 (12%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A+   +             I+ N    I     +  +   NR    L+            
Sbjct: 331 ALGRQRRHREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGR-- 388

Query: 352 NDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
              +++ L   +K  E+L+   +  ++     + +   H+D   L    T+  I+   P 
Sbjct: 389 --RVVDLLVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPIL--GPD 444

Query: 410 GGTIW---MFENLTVQVDLETKYNTLVK------------------VQGETIDHLSE-GV 447
           GG +       +++ +   E +   L                    + G  +   SE  +
Sbjct: 445 GGVVGASKTVRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSI 504

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITS 506
                DG I   N     +     + +        + +        +  G + F  ++  
Sbjct: 505 ITLDRDGIISGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVAR 564

Query: 507 FDDERKSLQGTLELLSDS---VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEK 558
            + E    +    L  D     +  S+  L +        +   V+VT+   AER +   
Sbjct: 565 AEQEGAETREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAA 624

Query: 559 NEALRK 564
            + L+ 
Sbjct: 625 RDQLQM 630



 Score = 38.4 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 24/207 (11%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                +           + + ++G+   G DG I   N    +L+   E +       R 
Sbjct: 334 RQRRHREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVG----RR 389

Query: 483 IAATCSRYYNESDGWDLFAAI-----ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +         E++  D+ A I     + SFD  R+   G L    D  +  S I  P+  
Sbjct: 390 VVDLLVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHL---LDVAVTVSPILGPDGG 446

Query: 538 TM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +    T  +++    AE  + E N  L      + +       ELR  L  ++G   L 
Sbjct: 447 VVGASKTVRDISAKKAAEARIRELNTGLEHQIAERTA-------ELRR-LNVLLGSV-LQ 497

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILL 621
             S++  +   +   +   +  +  +L
Sbjct: 498 AASEVSIITLDRDGIISGFNLGAERML 524


>gi|310824892|ref|YP_003957250.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397964|gb|ADO75423.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 693

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/497 (18%), Positives = 169/497 (34%), Gaps = 38/497 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           I  +  + +  F    ++   N  F E+                 L  LR    +     
Sbjct: 201 IFEHAPLGLFHFGNPPFIIACNDCFAEILG-----STRQRLLGLNLLTLRDTRLM----- 250

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIWMFENLTVQVDL 425
               +  +   +   E H  +        + V             G + + E++T Q  +
Sbjct: 251 -DCVRATLLGKHARYEGHYTSVTTGKVTPVRVHFAPFFDEQERVVGGVGIVEDITSQHRM 309

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE----------NRLS 475
           E +  T + +    +     G+A F    R    N A  +                   S
Sbjct: 310 EEERATQLALASTLLRTAPIGMAFFDTRLRFVHINDALATATGQPPEAHLGRSLPAMLGS 369

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G H+              +  +L A  +         L G     + S+     +    
Sbjct: 370 GGLHLEQFLRHVLETGQPLERLELSAQEL--------GLAGPWLYWTLSIYPVRAVDGRI 421

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                   N T +  AE+  +      ++A  +++ F+   S+EL++PLT +      L+
Sbjct: 422 LGIGSVVENTTGTKLAEQERSRLLREAQEAVRVRDDFLTIASHELKTPLTPLSLRLATLE 481

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             KL          + +     T L  L+ND+LD + +++G + L+     L+ L+  V 
Sbjct: 482 R-KLERGEPVDPASLHHARQHLTRLTTLINDLLDTSRIESGGLALHPQPTRLDVLIEHVI 540

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               T     + RI      +    + D  RL Q+ S +L NA+ +S  G T+ +     
Sbjct: 541 HVTETLHDARD-RITFHLPVRPIEVLGDPYRLEQVISNLLENALKYSPDGGTIRVSLEAR 599

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
               + +V + G  IP D  + +F R+            G+GLGL I    +  HGG + 
Sbjct: 600 GDVVLMTVSDPGIGIPSDQQQHLFERYFRARNVSTHAYGGLGLGLYICRDIVARHGGSIW 659

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +T    +P+
Sbjct: 660 VESEVGRGSTFYVALPT 676



 Score = 41.1 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 57/447 (12%), Positives = 136/447 (30%), Gaps = 65/447 (14%)

Query: 43  LLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGK------DETPEII 96
           LL++ R      V +  S ++ I  +  ++  L+       +V DG+      ++  E++
Sbjct: 22  LLVQPRWGAGGLVRQERSQVAHI--EADEFKLLMDAVADAVLVCDGQEHILHLNKAAELL 79

Query: 97  GQLHQRIDIPQTDTDL--LSFENWLKFHHYIKLSKAT--EKLRKEGQSFDLVAETQNDCA 152
               +     Q  + L       W      + L++        ++G+   +    +N   
Sbjct: 80  LGWTREELAGQPFSVLVPQRIRTW----GGVPLTQHLLDRNASRQGRPVLVPLRHRNGPE 135

Query: 153 IKIEGRVSGSCA------FLRILSLDGIYSELAETTLKC------KKLSNHISVFKVLFD 200
           + +E  +  + A       L +  +  +     E   +       +     ++    L +
Sbjct: 136 VVLEAVIGSTKAREHERIVLTLRHIPEVPDATTEPLEQGLCLYPWQHAHTGLAHMPTLAE 195

Query: 201 SLDFLVWHRDQAGDILWANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISS 255
            L  L++     G   + N  +         E  G   Q+ +G +    ++      + +
Sbjct: 196 RLYQLIFEHAPLGLFHFGNPPFIIACNDCFAEILGSTRQRLLGLNLLTLRDTRLMDCVRA 255

Query: 256 SALEK--NFCETVSTLEHGNNKSYKIV------RVLNSFGEAGIAIDVSK----EITVND 303
           + L K   +    +++  G     ++             G  GI  D++     E     
Sbjct: 256 TLLGKHARYEGHYTSVTTGKVTPVRVHFAPFFDEQERVVGGVGIVEDITSQHRMEEERAT 315

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE----------IDLAFLATNPSND 353
           QL     +L    + +A FD        N +                +     +     +
Sbjct: 316 QLALASTLLRTAPIGMAFFDTRLRFVHINDALATATGQPPEAHLGRSLPAMLGSGGLHLE 375

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           + L  +    +  E+L     +  +   +             +G+ L          G  
Sbjct: 376 QFLRHVLETGQPLERLELSAQELGLAGPWLYWTLSIYPVRAVDGRIL----------GIG 425

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETI 440
            + EN T     E + + L++   E +
Sbjct: 426 SVVENTTGTKLAEQERSRLLREAQEAV 452


>gi|220933274|ref|YP_002512173.1| Hpt sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994584|gb|ACL71186.1| Hpt sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 866

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 13/247 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    +   +A++ K  F+ ++S+ELR+PL  +IG +DLL  +    LN +Q      
Sbjct: 189 RTLKGAIDRANEANQAKPRFLANMSHELRTPLNGVIGMSDLLMDT---PLNDEQRDLGRS 245

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+ +LL L+ +ILD++ +++G +        L+ L++        +     + +   
Sbjct: 246 IHTSARVLLGLIENILDISRIESGKLSSEREDFDLHRLVHGTLGMFEAQARGKGLHLGAR 305

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKN 725
            D  +  +   D   L Q+   ++ NA+ F+ +G  V L        A D     F V++
Sbjct: 306 IDPSVPFALHGDALHLRQVLVNLIGNALKFTERG-QVELSVQLLEAPAEDAVRLRFKVRD 364

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPE+    +F  F         +  G GLG +I    + L GG + + S     TT
Sbjct: 365 TGIGIPEEAQARIFESFEQADTTVTRRYGGTGLGTTIARQLVQLMGGTMGLESRVGEGTT 424

Query: 784 INCRIPS 790
               +P 
Sbjct: 425 FYFDLPL 431


>gi|107103629|ref|ZP_01367547.1| hypothetical protein PaerPA_01004699 [Pseudomonas aeruginosa PACS2]
          Length = 1417

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 200/521 (38%), Gaps = 38/521 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +   +         +L   + V+I   D++  +   N     +       +    S  
Sbjct: 479 AERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS-P 537

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVT------- 405
            LL   R      ++L  + ++  +     + +ET + T+   +G  L V ++       
Sbjct: 538 TLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRDE 597

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +    G + +  ++T   + E +            D    G+  +         N     
Sbjct: 598 AGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMCE 657

Query: 466 LWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSL 514
           L+                    H  ++  T +      +G   +  I      D   + +
Sbjct: 658 LYGQPLALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGGIRFI 717

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   ++  D+       PL   Q     +++T   + +  L E  E    A   K+SF+ 
Sbjct: 718 QAGAQVERDA----DGNPL---QVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLA 770

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  ++G   L + +    LN +Q  Y++  S+++T LL L+NDILD + ++
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQT---DLNERQRDYLDKASSAATSLLGLLNDILDYSKIE 827

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG + L      L  L+ ++   ++    + ++ +    D +L  + V DR RL QI   
Sbjct: 828 AGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILIN 887

Query: 694 ILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +  NA+ F+++G   V L+    +   +     V + G  I  +  + +F  F       
Sbjct: 888 LAGNALKFTARGHVLVSLRRLAHDAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEAST 947

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL I +  ++L GG + + S+    +     +
Sbjct: 948 SRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWFDL 988


>gi|15599307|ref|NP_252801.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9950314|gb|AAG07499.1|AE004827_8 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 1417

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 97/521 (18%), Positives = 200/521 (38%), Gaps = 38/521 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +   +         +L   + V+I   D++  +   N     +       +    S  
Sbjct: 479 AERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS-P 537

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVT------- 405
            LL   R      ++L  + ++  +     + +ET + T+   +G  L V ++       
Sbjct: 538 TLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRDE 597

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +    G + +  ++T   + E +            D    G+  +         N     
Sbjct: 598 AGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMCE 657

Query: 466 LWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSL 514
           ++                    H  ++  T +      +G   +  I      D   + +
Sbjct: 658 MYGQPLALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGGIRFI 717

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   ++  D+       PL   Q     +++T   + +  L E  E    A   K+SF+ 
Sbjct: 718 QAGAQVERDA----DGNPL---QVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLA 770

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  ++G   L + +    LN +Q  Y++  S+++T LL L+NDILD + ++
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQT---DLNERQRDYLDKASSAATSLLGLLNDILDYSKIE 827

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG + L      L  L+ ++   ++    + ++ +    D +L  + V DR RL QI   
Sbjct: 828 AGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILIN 887

Query: 694 ILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +  NA+ F+++G   V L+    +   +     V + G  I  +  + +F  F       
Sbjct: 888 LAGNALKFTARGHVLVSLRRLAHDAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEAST 947

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL I +  ++L GG + + S+    +     +
Sbjct: 948 SRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWFDL 988


>gi|60682012|ref|YP_212156.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60493446|emb|CAH08232.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 812

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 102/541 (18%), Positives = 222/541 (41%), Gaps = 32/541 (5%)

Query: 269 LEHGNNKS----YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
           +  G  K     Y+    L +     + + + KE  ++ +     +I  N+ V + ++++
Sbjct: 278 IVDGYRKWNSEDYQWFSSLANIISICMELRIIKERVMHSEKLFH-DIFTNIPVGLELYNK 336

Query: 325 NRYLQFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
              L   N   +E++        I L    +     ++ E LR+       L +     +
Sbjct: 337 EGVLLDCNNRNLEIFGVGDKSRIIGLNLFESPNMTRDIHESLRAGRPGTFHLKY-----D 391

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
                +  ++ +      + ++L +    +     + +  + T + +  +K +       
Sbjct: 392 FDEERRLFQSERRGVMDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFS 451

Query: 438 ETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              D+   G A     D         +R+L ++ +  L+    I +      R       
Sbjct: 452 IISDYSKVGYAKINLLDHTGFAVRQWYRNLGESHDTPLADIIGIFSHMHPDDRKSVLDFY 511

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFVNVTDSVRA 551
               A     FD + +          + + + S++     P P  + +    ++T     
Sbjct: 512 EKAKAGTERFFDGDLRIRPADGSDRWNWIHKSSMVTAYQSPNPRLELVEVNYDITVQKET 571

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    +   +++ +K++F+ ++S+E+R+PL  I+GF+DLL T       ++Q ++  
Sbjct: 572 EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMT---VDDPAEQEEFRR 628

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++T+LL L +DI+DL+ +DAG  +     + L      + Q +  K+ E  + +++
Sbjct: 629 TIQKNNTLLLQLFSDIIDLSKIDAGSFEYTPKPVCLYQFCAMMVQKMRNKVSE-GVELQI 687

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729
             D  L ++  AD   L Q+ +  +SNA+ F+ +G T+ +    D        V++ G  
Sbjct: 688 DEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRG-TITVGYRIDARQQLEMFVEDTGIG 746

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I  +  ++VF+RF+        +G GLGL + +S I   GGH+ + S     +     +P
Sbjct: 747 ISIENQEAVFDRFMKVDSF--VQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804

Query: 790 S 790
           +
Sbjct: 805 A 805


>gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 1127

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 140/342 (40%), Gaps = 4/342 (1%)

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDE 510
           PD R+            T          ++N+     R   E     +         +++
Sbjct: 342 PDERLMALLEEAGPAIGTALRSARYRAQLQNMLEETQRQAEELQVQSEELRVSNEELEEQ 401

Query: 511 RKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            ++L+ +   L     E          Q  L      D  R   ALT K   L +A + K
Sbjct: 402 GRALKESQTRLEQQQAELEQTNSQLEEQAQLLETQRDDLERGASALTLKARELEQASQYK 461

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+ELR+PL +++  + LL  +  G+L+  Q  Y   I +S   LL L+NDILD
Sbjct: 462 SDFLANMSHELRTPLNSLLILSKLLADNPEGTLSEDQVNYARTIQSSGNDLLALINDILD 521

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           L+ ++AG ++     + +  L  +V+Q       +  +   +  D        DRQRL Q
Sbjct: 522 LSKIEAGHIQARPEAVSMQRLTEDVRQLFQPVADDRGLAFDIELDAGADLMETDRQRLEQ 581

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-- 747
           I   +LSNA  F+  G   +  +A+      F+V + G  I  +  K VF+ F       
Sbjct: 582 ILKNLLSNAFKFTESGKVKLSISAQPGDRIAFAVSDTGIGISPEQQKGVFDAFQQADGTI 641

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +  G GLGLSI      L GG + + S     +     +P
Sbjct: 642 SRRYGGTGLGLSISRELARLLGGRIRLESRLGEGSVFTLSLP 683


>gi|312211920|emb|CBX92004.1| hypothetical protein [Leptosphaeria maculans]
          Length = 934

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 202/515 (39%), Gaps = 52/515 (10%)

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +   +A  D +             W +           D  +  + + +       W   
Sbjct: 243 IPHIVATLDTDGKAI----KLSRSWYLFSGMTEEQSLGDGWISAMHAEDVTEMTKAWANV 298

Query: 375 KENIFSVYKSSETHKDTWHLP-NGQTLHVIVT--SNPRGG---------TIWMFENLTVQ 422
            E+  S +    TH+  +    +G     ++    +  G           + + E +  +
Sbjct: 299 VEHGLSHW----THQARYRRAVDGTYCWFLIRAEPHRDGSGKILRWYASMMDIHEWVVAR 354

Query: 423 VDLETKYNTLVKVQGET------ID-----HLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           +  + +  +++ +  +T      ID     ++ EG   + P+  +KL   A R    + +
Sbjct: 355 LKADIRRQSIITLFAQTDVMLWGIDKSNQMYICEGRLKWDPNRVVKLMESALREQQASRD 414

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           +  S    +RN                 F+ ++  ++D+R      +       ++ S  
Sbjct: 415 D--STENTVRNADQELVHTIQRVLKGRGFSPVVEHWEDDRYFRTRFVAEHVPPGIDASTT 472

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPL 584
                Q  L         +A   L  +N+ L   ++       +K+ F+ ++S+E+R+P+
Sbjct: 473 SEDVVQAALALTFDITEEKARSILLTENKQLIAKEKAALDASNLKSRFLANMSHEIRTPI 532

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           + IIG ++ L       LN +Q ++   I  S+  LL LVND+LD + +++G M +    
Sbjct: 533 SGIIGLSEHLSD---CGLNEEQLEFSNSIEESAKFLLTLVNDVLDFSKMESGHMDVESIP 589

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
                ++++    +  +  E  + +      + G  F+ D  RL QI + ++ N++ F+ 
Sbjct: 590 FSPLKIISDTLIPLRLQAKERGLALTFDCKLEPGAMFLGDPWRLRQILTNLIGNSLKFTQ 649

Query: 704 KGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           +G  + L     +         F+V + G  I E++   +F  F        R   G GL
Sbjct: 650 QG-QIDLSVRSADLKDSTMVLHFAVHDTGMGITEEVLDGLFTPFSQADGSTARLYGGTGL 708

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL+I +  + L GG +S++S+    TT  C+IP K
Sbjct: 709 GLAICKQLVELMGGQISLASTWGQGTTATCKIPFK 743


>gi|302035922|ref|YP_003796244.1| hypothetical protein NIDE0543 [Candidatus Nitrospira defluvii]
 gi|300603986|emb|CBK40318.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 771

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 122/256 (47%), Gaps = 4/256 (1%)

Query: 539 MLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + T  +  +    ER   L   NE L++ D+ ++ FV   S+ELR+P+T+I GF + +  
Sbjct: 508 LATLTDHLERRVQERTHELQTVNERLQEHDQRRSKFVSVASHELRTPMTSIKGFVENMLD 567

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L+ +Q  Y++ +  +   L  ++N +LD + +D G +++    + +++ + +V +
Sbjct: 568 GLTGQLSERQEHYLQRVKHNVDRLTRIINQLLDWSRLDVGRIEIKPEPLHIDEFVRDVVE 627

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RD 715
           S  T   E +I + V+   +  +  ADR +L QI   ++ NA+ F+     V +  +  D
Sbjct: 628 SFQTLAAEKSIVLDVLPCEQPITVRADRDKLEQILWNLVGNAIKFTPPSGHVSVSCSICD 687

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSI 774
                 +V + G  I  D    VFN F          +G  LGL I +S + LHGG + +
Sbjct: 688 ARYAQITVADTGCGIAPDELPHVFNEFSKVESAMPSSQGAQLGLFITKSLVALHGGQMCV 747

Query: 775 SSSDEGVTTINCRIPS 790
            S     T     +P 
Sbjct: 748 DSRLGVGTQFYFTLPL 763


>gi|229590396|ref|YP_002872515.1| putative aerobic respiration sensor-response protein; histidine
           protein kinase/phosphatase, sensor for arcA [Pseudomonas
           fluorescens SBW25]
 gi|229362262|emb|CAY49164.1| putative aerobic respiration sensor-response protein; histidine
           protein kinase/phosphatase, sensor for arcA [Pseudomonas
           fluorescens SBW25]
          Length = 771

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 147/371 (39%), Gaps = 12/371 (3%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIR 481
           + E       +     ID + + G+      G +   N     +    E   +     + 
Sbjct: 255 ERERALRENEERLRLIIDGVKDYGIFALDTAGHVTSWNAGAERIKGYTEQEIIGQHFSVF 314

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--QTM 539
            +   C ++   +            + +E   L+        SV+  +      A     
Sbjct: 315 YLPQECPQHPAMALDEATRHG---HYMEEGWRLRQDGTRFWASVVITAQFDATGALRGFS 371

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++TD   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL     
Sbjct: 372 KITRDITDRRAAEMALGNAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSA 431

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G     Q  +V +I  +   LL L+N++LD+A ++AG + LN   I L   L E    ++
Sbjct: 432 GG----QKAHVGHILRAGQHLLTLINEVLDIAKIEAGRLPLNIEPIRLAGALQEALALVS 487

Query: 660 TKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               +  I+++ + +        AD QRL Q+   +LSNA+ ++     V ++   +   
Sbjct: 488 PMAADAGIQLQPLPALAADIGIAADPQRLTQVLLNLLSNAIKYNQPQGQVSIEVKVEGPR 547

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
              +V + G  IP D    +F  F          G GLGL++ +S +    G +S+ +  
Sbjct: 548 IGVAVCDTGKGIPADKLGQLFKPFERLGADPNVEGSGLGLALSKSLLEKMDGQLSVHTQQ 607

Query: 779 EGVTTINCRIP 789
              +     +P
Sbjct: 608 GIGSRFTLELP 618


>gi|307154213|ref|YP_003889597.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306984441|gb|ADN16322.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 681

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 161/378 (42%), Gaps = 10/378 (2%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I + + +  +   E      +      ++ + + +     +G +      F++    E  
Sbjct: 285 ISLKDEIAERARAENALKQSMATNRALLNAIPDWMFRITKEGTVV----NFKAGKCVEVP 340

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSII 531
            LS     +N+         +S    +  A +T   +E + L+  L     +   E  I 
Sbjct: 341 LLSEEFLEKNLGEVLPSEIGQSMMNCIKEAFLT---EELQILEYQLNSHHGEKDYEVRIA 397

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                + M    ++T+  R E+ +    E  ++ +E+K  FV   S+E R+PL  I+   
Sbjct: 398 ITSENEVMAIVRDITERKRVEQDIRHALEKEKQLNELKTRFVTMTSHEFRTPLAIILSSA 457

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +L++         K+  +++ I  +   +  L+ND+L L   +AG ++   + I L    
Sbjct: 458 ELIEHYAHKLDEKKKMTHLQRIQTAVKHMTGLLNDVLVLGKAEAGKIEFMPTPISLAQFC 517

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            ++ + +      +   I   +  +  +   D+Q L  I + +L+NA+ +S + S V   
Sbjct: 518 RQLVEEVQLTTSTH--TIVFCAHNQCPNGCLDQQLLRHILTNLLTNAIKYSPESSLVQFD 575

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              ++   IF +++ G  IP +    +FN F   ++ G   G GLGLSIV+  ++LHGG 
Sbjct: 576 LICESQKVIFRIQDQGIGIPANEQPELFNSFFRASNVGSISGTGLGLSIVKKAVDLHGGQ 635

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     TT   ++P
Sbjct: 636 IEVESRLGEGTTFTVKLP 653


>gi|153807682|ref|ZP_01960350.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185]
 gi|149130044|gb|EDM21256.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185]
          Length = 631

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 5/234 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          +  +Y + I  ++ 
Sbjct: 402 MEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PEVDDREEMREYTDIIETNTN 458

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL L+NDILD++ ++AG      + I +N  + E++QS+  ++  + +           
Sbjct: 459 LLLQLINDILDMSKIEAGTFDFCPALIDVNQTMEEIEQSMQLRLKNDAVTFTFCERLPEC 518

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D+ RL+Q+ S  + NA+ F+  GS  +    +D     F V + G  +  + C+ V
Sbjct: 519 MLYIDKNRLMQLLSNFIVNAIKFTKSGSIRMGYRMKDINTIYFYVSDTGCGMSPEQCRHV 578

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F RFV      Q  G GLGLSI    +    G + ++S +   +T    +P ++
Sbjct: 579 FERFVKYNPFIQ--GTGLGLSICHMIVEHLKGEIGVNSEEGKGSTFWFTLPYRK 630


>gi|262280993|ref|ZP_06058776.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
 gi|262257893|gb|EEY76628.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
          Length = 935

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 141/326 (43%), Gaps = 18/326 (5%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                +  I     R   ++    L           ++ +   ++ L  S LE       
Sbjct: 198 RWIAPMYEIRMQLQRLNADTLDQHLVINSTGELRLLQRDIANVVKRLHFSFLELKEHTEQ 257

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + +   ++  +         +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL
Sbjct: 258 TEEDLRRTLDTLEVQNI--TYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLL 315

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +  +LN++Q+ Y++ I  SS  LL L+ND+LD + +DAG ++L  +   L + + +V
Sbjct: 316 LRQQ--NLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDV 373

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++    + +I +       +    + D  R  QI + ++SNA+ F+  G  +I++  
Sbjct: 374 MDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVR 432

Query: 714 RDNGDF-----IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
            ++ D       FSV+++G  +     K +F  F         Q  G GLGL+I +  ++
Sbjct: 433 MEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVH 492

Query: 767 LHGGHVSISSSD-----EGVTTINCR 787
           L  G +    +      E  +T    
Sbjct: 493 LMHGQIGFEDNQERAPTEKGSTFWFT 518


>gi|332141752|ref|YP_004427490.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551774|gb|AEA98492.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 699

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 137/318 (43%), Gaps = 13/318 (4%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +I A             LF    ++  D   S++  L L + ++L    + + +      
Sbjct: 121 DIQALTELLKQLDYVVTLFEQDASNQVDTVLSIEFYLWLATLALLCIEAVFIFSPMEQTV 180

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
               +   R +    E  E  RKA + K+ F+  +S+ELR+P+  + G  +L   +    
Sbjct: 181 KQAFSKLTRLKAEAEETAEKARKASKAKSEFLSSMSHELRTPMNGLFGMIELAIDN---- 236

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              K S Y++    +   LL L+NDILD++ ++AG +K+  + + L  +L++V       
Sbjct: 237 -PEKSSIYLKKAKTAGRQLLVLINDILDVSKIEAGKIKIERAPVDLLQILDDVVSLQRVY 295

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DN 716
                +    + D  L   V  D  R+ QI   +L+NA+ F+ +GS V LK       + 
Sbjct: 296 CQRKGLEFIYLKDPDLPHVVEGDITRISQILHNLLNNAIKFTERGS-VTLKVRYTKHPNG 354

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
               F V + G  I      ++F +F        R   G GLGLSI +    L  G +++
Sbjct: 355 NFLSFDVIDTGIGIASSKLDNIFRKFEQADKTTTRDFGGTGLGLSIAKQLAQLMNGDITV 414

Query: 775 SSSDEGVTTINCRIPSKE 792
           +S     +T +  + +KE
Sbjct: 415 TSFIGQGSTFSFTMAAKE 432


>gi|170724253|ref|YP_001751941.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
 gi|169762256|gb|ACA75572.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
          Length = 592

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 151/372 (40%), Gaps = 24/372 (6%)

Query: 422 QVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +   ET  + L+   +     +D + +G+ +    G ++  NP  +       NRL    
Sbjct: 240 RKHQETNVDELLAGQQRLQAVLDSIDDGLLIIDRQGHLEHLNPVAQRQLGWSNNRLG--- 296

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQ 537
                 +  +      +       ++     +R     ++E+  +  +L YS+ P+ + Q
Sbjct: 297 ------SPLAEALQRPELEQQLRQVLRGGSLDRPPEDLSIEVDEESRLLSYSLTPVSHPQ 350

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    +      E+            + +++ FV   S+ELR+P+T +     LL+  
Sbjct: 351 GPILGAVMVLHDVTEQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLRER 401

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 ++++  +E I      L  L+ND+L+ +   +G+ KL  +   +++LL   +  
Sbjct: 402 VKFPPQARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDELLERAQVR 461

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + +     I +    +  L    AD  +L ++   +L NA+  +  G  + L A R   
Sbjct: 462 FSEQASVKQIELIKALEPPLPRIQADIAQLDRVLDNLLHNAIRHTGSGGRIRLHARRHAE 521

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             I SV++NG  I       +F  FV      ++ G GLGL++ +  + LHGG + + S 
Sbjct: 522 RVIISVEDNGEGIAYGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVFSR 579

Query: 778 DEGVTTINCRIP 789
               T     +P
Sbjct: 580 PGQGTQFYMALP 591



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 67/195 (34%), Gaps = 22/195 (11%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
            + F + I+    ++  L +   +    +      + ++ ++   FG    A+   +E  
Sbjct: 191 ARRFGQPIEALAKAADQLGQGNFDVTLPVSQ----AIEVNQLTRRFGLMAEALRKHQETN 246

Query: 301 VNDQL---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           V++ L        +L ++   + I D+  +L+  N                  SN+ L  
Sbjct: 247 VDELLAGQQRLQAVLDSIDDGLLIIDRQGHLEHLNPVAQR---------QLGWSNNRLGS 297

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRG---GT 412
            L  A + PE            S+ +  E           + L   +T   +P+G   G 
Sbjct: 298 PLAEALQRPELEQQLRQVLRGGSLDRPPEDLS-IEVDEESRLLSYSLTPVSHPQGPILGA 356

Query: 413 IWMFENLTVQVDLET 427
           + +  ++T Q   E 
Sbjct: 357 VMVLHDVTEQRAFER 371


>gi|320334816|ref|YP_004171527.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
 gi|319756105|gb|ADV67862.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
          Length = 1838

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 18/298 (6%)

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             E +S Q  L   ++ + E +   L   Q         +   A +AL EK   L    + 
Sbjct: 1073 QELQSQQEELRQTNEELEEKA--RLLADQNREVEHKNREVETARQALEEKAAQLALTSKY 1130

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+ ++S+ELR+PL +++   + L+ +   +L+ +Q  Y   I AS   LLNL+NDIL
Sbjct: 1131 KSEFLANMSHELRTPLNSLLLLANQLRDNPERNLSEQQVAYARTIFASGNDLLNLINDIL 1190

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
            DL+ +++G +  + + + L  +   V+ +      +  +   +  D +L  S V+D +RL
Sbjct: 1191 DLSKIESGTVTADTADVPLRAVRESVESTFTHMAADKGVAFALDFDARLPGSLVSDEKRL 1250

Query: 688  LQIFSKILSNAMDFSSKGSTVILK-------------AARDNGDFIFSVKNNGSSIPEDM 734
            LQI   +LSNA  F+ +G   +                +R  G   F V + G  I  D 
Sbjct: 1251 LQILKNLLSNAFKFTERGEVRLTVTPATSGWSSDHPALSRAPGVIAFRVSDTGIGIAPDK 1310

Query: 735  CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +F  F         +  G GLGL+I      + GG +++ S+    +T    +P+
Sbjct: 1311 QRVIFEAFQQADGTTSRKYGGTGLGLAISRELARILGGEITLQSTPGTGSTFTLYLPT 1368


>gi|293371900|ref|ZP_06618304.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292633146|gb|EFF51723.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 400

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 167/375 (44%), Gaps = 28/375 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIK--LSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           K     K     +D L + + VF  D  I    S+PA   +     N ++      N+  
Sbjct: 39  KERFRDKYSTRILDALPDMLTVFDHDANIIELASSPATNHVEGISPNNITT----TNVKD 94

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTF 542
              +   ES   ++   I+T      +S     EL+ D VL   E  I PL     +   
Sbjct: 95  ILPKEAYESVRKNMDKVILTG-----ESSTARHELMLDGVLHHYENRIFPLDKKYLLCMC 149

Query: 543 VNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +++    AE+        L        ++D +K++F+ ++S+E+R+PL  I+GF+ L+ 
Sbjct: 150 RDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI- 208

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +   +++QY E I  +S +LLNL NDILDLA+++A  +K N   I L D+  +++
Sbjct: 209 --TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDICLQLE 266

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           Q    K  +N +++ +           D  R++QI S +LSNA  F+ KG  +       
Sbjct: 267 QQFWHK-TQNGVKLILDDVDTDMYTSGDWNRIIQIISNLLSNATKFTPKGE-IHFGYREK 324

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                F VK++G  IP     ++F RF       Q  G GLGL++    +   GG + + 
Sbjct: 325 EDFVEFYVKDSGIGIPAARIATIFRRFGKVDDFVQ--GTGLGLTLCRMLVEKMGGRIWLR 382

Query: 776 SSDEGVTTINCRIPS 790
           S +   +     +P 
Sbjct: 383 SQEGQGSRFYFTLPL 397


>gi|228964063|ref|ZP_04125190.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795633|gb|EEM43113.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 896

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFNPIETTNLSHDMQSISKE 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNLGEGSTFTVYIP 731


>gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 888

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    E    A   K+ F+ ++S+E+R+P+  I+G + L   ++   L+ +Q  YV  
Sbjct: 142 QELEVAYELAEGATRAKSDFLANMSHEIRTPMNAILGMSHLALQTR---LDPQQFDYVSK 198

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG + L      L+ +L  +   +  K     I +   
Sbjct: 199 IQRSAQHLLGIINDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFE 258

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D +L +    D  RL QI     +NA+ F+ +G   V +              SV++ G
Sbjct: 259 VDHQLDTLLYGDPLRLGQILINYANNAVKFTEQGEILVKVSCLEKQPQEVLLHCSVQDTG 318

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + ++  + +F  F        R   G GLGL+I      L GG V + S     +T  
Sbjct: 319 IGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAISRKLAELMGGEVGVQSEPGRGSTFW 378

Query: 786 CR 787
             
Sbjct: 379 FT 380


>gi|84387569|ref|ZP_00990587.1| Signal transduction histidine kinase [Vibrio splendidus 12B01]
 gi|84377617|gb|EAP94482.1| Signal transduction histidine kinase [Vibrio splendidus 12B01]
          Length = 856

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 171/434 (39%), Gaps = 40/434 (9%)

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL--TVQVDLETKY 429
           + W +   +  +  +    T    +G+  +        G  I+ F ++  T++   E + 
Sbjct: 299 RAWIQRKVAA-ELDKLMDFTRSASDGEEYN-----KFDGSNIFEFHHIGCTLEDTFE-RL 351

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           +   +   +  +     + V+   G +   NPA R                 +     ++
Sbjct: 352 SEQNQKFQDLFNFAHSPILVWSDKGDLIQMNPAARMAL----------FDADDNYGAVAQ 401

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML----TFVNV 545
            +      ++   +      +   L G    + + V  +++  +     +        ++
Sbjct: 402 EFEHRMLPNIHMVV------QGSKLTGINVPIGEKVFRWNMSAIRVEHGITGVVVQGQDI 455

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T  + AER      E       ++  F+  +S+E+R+PL  I+G + LLK S     N +
Sbjct: 456 TKLIEAERQADRAREEAEHLANVRADFLAKMSHEIRTPLNGILGVSQLLKRSIHSEDNRE 515

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   V+ +  S+  LL ++NDILD + ++ G   +      L +L+N +         + 
Sbjct: 516 Q---VDVLCNSAEHLLAVLNDILDFSKIEQGQFNIQKKDFRLGELVNTLDSIYRPLCGDK 572

Query: 666 NIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR----DNGDF 719
           +I   +++          D+ RL QI   ++SNA+ F+ +G   V  +       D+   
Sbjct: 573 SIAFTIVNHLADDIEINTDQVRLNQIMFNLVSNALKFTHQGGISVSFELESIFNSDHASL 632

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           I  VK++G  I E    +VF  FV       R   G GLGL+IV++ +++  G + + S 
Sbjct: 633 IVRVKDSGIGIDESKIDAVFEPFVQAEETTTREYGGTGLGLTIVKNLVDMLEGDIQVRSE 692

Query: 778 DEGVTTINCRIPSK 791
               +     IP +
Sbjct: 693 INQGSEFIIEIPVE 706


>gi|238753119|ref|ZP_04614568.1| hypothetical protein yrohd0001_39490 [Yersinia rohdei ATCC 43380]
 gi|238708669|gb|EEQ00938.1| hypothetical protein yrohd0001_39490 [Yersinia rohdei ATCC 43380]
          Length = 1195

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 170/388 (43%), Gaps = 20/388 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW----- 467
           +++   + ++   + +  T +  +    + +   V V   +G +   N AF + +     
Sbjct: 555 LYLSREIRMRKKSQLELETQLSFRQTLSNAIPMPVYVLSMEGELCSYNHAFTTFFSPELR 614

Query: 468 -KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +   +       +  I +T      +    D   A     ++ ++     L  L+  ++
Sbjct: 615 EEIRTSLFDSRHPLAGIFSTIRHDVEKGLPSDSVLAHHLILNNGQEDRH-ILHWLTLCIM 673

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
             ++ P      +  + ++T+S +  +AL  + +   +A++ K+SF+  +S+E+R+P++ 
Sbjct: 674 PANVPPT----IICGWQDITESKQLMKALQIEKDKAIQANQAKSSFLASMSHEIRTPIST 729

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GF +LL T        K+S  ++   AS+  LL L+ +ILD+  +++G  + +   + 
Sbjct: 730 IMGFLELLSTHNQSPNEEKES--IQLAYASAQHLLGLIGNILDMEKIESGNFEPSPEWVD 787

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKG 705
           +  L+    ++      +  +++  ++    G +   D Q   Q+ S  LSNA+ F+ +G
Sbjct: 788 VELLIESTLRAFEGLAKQKQLQLTFVNRLVKGEYLWLDPQAFRQVLSNFLSNAIKFTQQG 847

Query: 706 STVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           S + ++A            I SV + G  I ++  + +F  F   +   Q+ G GLGL I
Sbjct: 848 S-IEVRAETHTESAAQTQLIMSVTDTGPGISQEEQQLLFKPFSQTSSGKQQTGSGLGLMI 906

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
               I    G + + S     TT+   +
Sbjct: 907 CRELILRMNGEIKMFSQPGQGTTLTVML 934


>gi|269128961|ref|YP_003302331.1| multi-sensor signal transduction histidine kinase [Thermomonospora
           curvata DSM 43183]
 gi|268313919|gb|ACZ00294.1| multi-sensor signal transduction histidine kinase [Thermomonospora
           curvata DSM 43183]
          Length = 1383

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 4/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA   + E L + +  K  F   +S+E R+PLT I+G  + L+ S+LG  +    + +E 
Sbjct: 331 RAQQRRAEELAELNRAKTVFFTDISHEFRTPLTLIVGPLEELR-SRLGPADQWVRENLEI 389

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  +  LV+ +LD A ++AG M+  Y    L     ++       + +  +R++V 
Sbjct: 390 IRHSALRMTRLVDTLLDFARIEAGRMEARYQPTDLAVFTADLAGVFRAAVDKAGLRLEVD 449

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                     DR    +I   +LSNA+ F+ +GS + ++   ++G  +  V + G  + E
Sbjct: 450 CPPLPEPVYVDRGMWEKIVLNLLSNALKFTFEGS-ITVRLRAEDGQAVLRVSDTGVGMSE 508

Query: 733 DMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                VF RF     A      G G+GL++V   ++LHGG + + S+    TT   R+P
Sbjct: 509 QDLPRVFERFQRVKAAQTRSIEGSGIGLALVRELVHLHGGTIGVDSTLGKGTTFTIRLP 567



 Score = 38.0 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 60/225 (26%), Gaps = 22/225 (9%)

Query: 297 KEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +   +  Q       L  +L  A  + ++   +   N +F +L       L         
Sbjct: 748 EMHRLRRQHAAWRSALFDSLQEAFFVMNEQGEIIEINNAFTDLLGFGPEGLPYRQPFPWW 807

Query: 356 LE---FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-NPRGG 411
            +      +  +  E ++  T +      + +   H+D   +      + + T       
Sbjct: 808 PDPDTEPEAHRRTAELVSRMTRRAK--GRHTTPLRHRDGRRVWVATAYNEVFTPGTGERR 865

Query: 412 TIWMFENLTVQVDLETKYNTLVKV--QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            +    ++T +     +   L  +  +    D L + +              A   +   
Sbjct: 866 IVGTLRDITAERAAAQRDMALANMSLRLSGTDSLPQTL------------RAALEEMAGL 913

Query: 470 EENRLSPGTHIRNIAAT-CSRYYNESDGWDLFAAIITSFDDERKS 513
            E                      E    DL A +  + +D R+ 
Sbjct: 914 WEPARIIAATWDEGDRVQVISGGAEIGWEDLPAPVRATIEDLRRR 958


>gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2]
 gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2]
          Length = 948

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 123/654 (18%), Positives = 240/654 (36%), Gaps = 65/654 (9%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV----WHRDQAGDILWANIS 221
           L+ ++ + + +E    +L+ +     +  F+ LF   D  V    W R     + W    
Sbjct: 73  LKYIAENRLTAENGVMSLRARDDKTVVPNFEPLFADSDCSVMGNAW-RGSLESLAWFMRY 131

Query: 222 YKKNTETEGIVFQKAIGESRKLF-------KEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           ++ N      + +  +  S  L           +++     +  E+      +T +   N
Sbjct: 132 WRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVERDEALKALHERIIKYRNATQDENGN 191

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH--------NLTVAIAIFDQNR 326
             + I +          A+           L    + +         +L + + I D+N 
Sbjct: 192 NLFWISQGPRPGVGYFYALTPVYLANRLQALLGVEQPIRMENFFTPGSLPMGVTILDENG 251

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
                  + + L       +   P   +   +        E +  K    +  S+  S  
Sbjct: 252 ------HALISLTG-PEGNIKAEPHWMQERSWFGYTPGFRELVLKKNLPPSSLSIVYSV- 303

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLETKYNTLVKVQGETI 440
                        L+ I+ +   G  ++M   +  +           +     +   + +
Sbjct: 304 PVDLVLERIRMMILNAILLNVLVGAALFMLTRMYERRIFIPAESDAQRLEEHEQFNRKIV 363

Query: 441 DHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
                G+ +    DG   LSN     L  T  N L+     R     C +  N       
Sbjct: 364 ASAPVGICILRTMDGINILSN----ELAHTYLNMLTHEDRQRLTQIICGQQVN------- 412

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++TS +    +LQ +           +I            V+V+  V+ E +L E  
Sbjct: 413 FVDVLTSNN---TNLQISFVHSRYRNENVAI---------CVLVDVSARVKMEESLQEMA 460

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L S   + V  ++ SS++
Sbjct: 461 QAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPSGVDRLVTAMNNSSSL 517

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LL +++DILD + +++  +K+        +++N +  +    +    + +    D  +  
Sbjct: 518 LLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIDPDVPV 577

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +   D  RL Q+ S +LSNA+ F+  G  ++L            V++ G  IP      +
Sbjct: 578 ALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVQCSGDYLSIRVRDTGVGIPAKEVVRL 636

Query: 739 FNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+ F       +   +G GLGL+I E  I++  G +S+ S     +    RIP 
Sbjct: 637 FDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690


>gi|254242797|ref|ZP_04936119.1| hypothetical protein PA2G_03563 [Pseudomonas aeruginosa 2192]
 gi|126196175|gb|EAZ60238.1| hypothetical protein PA2G_03563 [Pseudomonas aeruginosa 2192]
          Length = 1417

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 200/521 (38%), Gaps = 38/521 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +   +         +L   + V+I   D++  +   N     +       +    S  
Sbjct: 479 AERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS-P 537

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVT------- 405
            LL   R      ++L  + ++  +     + +ET + T+   +G  L V ++       
Sbjct: 538 TLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRDE 597

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +    G + +  ++T   + E +            D    G+  +         N     
Sbjct: 598 AGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMCE 657

Query: 466 LWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSL 514
           L+                    H  ++  T +      +G   +  I      D   + +
Sbjct: 658 LYGQPLALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGGIRFI 717

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   ++  D+       PL   Q     +++T   + +  L E  E    A   K+SF+ 
Sbjct: 718 QAGAQVERDA----DGNPL---QVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLA 770

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  ++G   L + +    LN +Q  Y++  S+++T LL L+NDILD + ++
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQT---DLNERQRDYLDKASSAATSLLGLLNDILDYSKIE 827

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG + L      L  L+ ++   ++    + ++ +    D +L  + V DR RL QI   
Sbjct: 828 AGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILIN 887

Query: 694 ILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +  NA+ F+++G   V L+    +   +     V + G  I  +  + +F  F       
Sbjct: 888 LAGNALKFTARGHVLVSLRRLAHDAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEAST 947

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL I +  ++L GG + + S+    +     +
Sbjct: 948 SRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWFDL 988


>gi|261196988|ref|XP_002624897.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
 gi|239596142|gb|EEQ78723.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
          Length = 1287

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 697 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 754

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 755 SLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSLAYQVDSSVP 814

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
            +V  D  RL QI   ++ NA+ F+  G  V L  +R + +        F FSV + G  
Sbjct: 815 DYVTGDPFRLRQIILNLVGNAIKFTEHGE-VKLAISRSDREECKDNEYAFEFSVSDTGIG 873

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     ++ +  
Sbjct: 874 IEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFT 933


>gi|168177696|ref|ZP_02612360.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671026|gb|EDT83000.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 464

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +     +   +       L    + + K D++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 210 NFKVKSEKMFDDEFGELSDTLNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++++          ++ I   S  L  +V ++LD +   +G MKLN   I + ++++ V
Sbjct: 270 NSNEVDK--EILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEINICEIIDTV 327

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +    + N I  K     KL +   DR R+ Q+   +L NA  F+ +G  V L    
Sbjct: 328 RKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKY 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       VK+ G  I ++    V  +F        +   G+GLSI +  I LH G + I
Sbjct: 388 EEEYITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN--GIGLSICDEIIKLHNGVLHI 445

Query: 775 SSSDEGVTTINCRIP 789
            S +   TTI+ ++P
Sbjct: 446 ESEENKGTTISIKLP 460


>gi|308069281|ref|YP_003870886.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858560|gb|ADM70348.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 482

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 4/245 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +       L    + + + ++IK+ F+  +S+ELR+PLT+I G+++ L +        +
Sbjct: 225 YELGELASTLNYMAQEIVRTNQIKDDFISSISHELRTPLTSIKGWSETLNSGGYDP--EE 282

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               ++ IS  +  L+ LV +ILD + ++   MKL   T+ L +LL E+  ++  K    
Sbjct: 283 TKIGMKIISKETDRLIGLVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMK 342

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I++++ S+        D  RL Q+F  I+ NA+ FS + S + L   R +G+   SV++
Sbjct: 343 QIKLQLDSEETAYLVHGDGNRLKQVFLNIVDNAIKFSHESSIIFLSLQRIDGNIEISVQD 402

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  I  +    V +RF    H  Q  G GLGL+I + FI  H G + I S     TTI 
Sbjct: 403 TGIGISAENLARVRDRFFQVDH--QNGGTGLGLAISQQFIERHHGQMLIRSELGAGTTIT 460

Query: 786 CRIPS 790
             +P+
Sbjct: 461 VSLPA 465


>gi|258623619|ref|ZP_05718612.1| sensor protein TorS [Vibrio mimicus VM573]
 gi|258584107|gb|EEW08863.1| sensor protein TorS [Vibrio mimicus VM573]
          Length = 968

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 123/260 (47%), Gaps = 5/260 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +      +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTHQLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   SL S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++ +   L  L+ 
Sbjct: 494 LLQET---SLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    +  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRI 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
               +     F+V+++G  I E    S+F+ F       +++G GLGL+I    +   GG
Sbjct: 611 SQDLEGQGIRFAVEDSGIGIAEQDQASLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGG 670

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + +SS     +  +  +P 
Sbjct: 671 ELQLSSQLGQGSCFSFTLPL 690


>gi|228943732|ref|ZP_04106134.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976242|ref|ZP_04136721.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977716|ref|ZP_04138102.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228782014|gb|EEM30206.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228783487|gb|EEM31587.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228815951|gb|EEM62174.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 883

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 141/315 (44%), Gaps = 29/315 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 465 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     + + F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 IEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIPS 790
           S+    +T    IPS
Sbjct: 705 SNVGEGSTFTVFIPS 719


>gi|162449198|ref|YP_001611566.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159780|emb|CAN91085.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 779

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 179/486 (36%), Gaps = 33/486 (6%)

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
           AI + D    +   N    ++       +  +            +   P +   + W + 
Sbjct: 168 AIFMLDTEGRVISWNAGAEQIKGYSAQEVIGSHF----------SRFYPAEAIERKWPQT 217

Query: 378 IFSVYKS-SETHKDTWH-LPNGQTLH--VIVTSN--PRG---GTIWMFENLTVQVDLETK 428
             +  +       + W    +G      VI+T+   P G   G   +  +LT +   E  
Sbjct: 218 ELAEARRVGRFEDEGWRVRKDGSMFWANVIITALRGPDGELRGFCKITRDLTERKRQEES 277

Query: 429 YNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                +     ++ + +  + +  P+GR+ + N     +       +  GTH        
Sbjct: 278 LRQSEERFRTLVEGVKDYAIFMLDPEGRVTMWNAGAERIKGYSAQEV-IGTHFSRFYPAE 336

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +      +     A    SF+DE   ++        SVL  + I  P+ +         D
Sbjct: 337 AIERGRPEAVLAAARREGSFEDEGWRVRKDGSSFWASVL-VTAIYGPSGELRGFSKITRD 395

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               +R      E +         FV  +++ELR+PL  I   T +LK    G  N++  
Sbjct: 396 LSERKR-----LEQMESNARQMEEFVAMLAHELRNPLAPIANATSVLKLE--GKDNAQVV 448

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
                +      L+ LV+D+LD++ +  G + L    I L D++    ++  T +     
Sbjct: 449 WAAGLMERQLGQLVRLVDDLLDVSRITRGKIALESKRIDLADVVTRAAEASRTWIDAREQ 508

Query: 668 RIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            +++   +G L     D  RL Q+ S +L NA  F+     + +    D+   I  V++N
Sbjct: 509 TLELQLPEGPLAIVSGDLARLTQVVSNLLHNAAKFTPPRGAIRVTVEADDAHAILRVRDN 568

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783
           G  I  ++   VF+ F        R   G+GLGL+IV   + LHGG V   S      + 
Sbjct: 569 GVGISPELLPQVFDLFTQGDRGLDRVEGGLGLGLTIVRRLVELHGGTVQALSEGPGRGSE 628

Query: 784 INCRIP 789
              R+P
Sbjct: 629 FIVRLP 634


>gi|90415044|ref|ZP_01223004.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK]
 gi|90323858|gb|EAS40464.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK]
          Length = 697

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 161/387 (41%), Gaps = 21/387 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E   + +D   +  +LV  + + + H  +    F     +      F  +    +   
Sbjct: 171 LLERAIIDIDYRERLQSLVTARTQELTHSQQRFKDFAK--TVGDW---FWEVDTDYQFTY 225

Query: 475 SPGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSI 530
               H+ N     +   +   +  +L   ++     ++       +L  D     +  S 
Sbjct: 226 ISAPHLANHVIDNTTILDIFGEQSELRVKLLDQLKSKKTFEDIEWKLPEDEGALWITLSG 285

Query: 531 IPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P  N Q        T  ++T   +    L    +    A+  K+ F+  +S+E+R+PL 
Sbjct: 286 TPYFNKQGKLLGYRGTAKDITHRKQRLVELQLARKQAETANNAKSEFLAMMSHEIRTPLN 345

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G  D L  S    L+ KQ ++V  +  S+ +LL ++NDILDL+ +++G  +L  + I
Sbjct: 346 AVLGLMDTLVDS---GLDEKQMEWVSQMEQSAQLLLTIINDILDLSRIESGKFELFNADI 402

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            + D +N V   +  +    NI +    D  +  S + D+ R+ Q+   ++ NA+ F++ 
Sbjct: 403 HIADSINLVVNQLNEQAKRKNITLTTQIDASVPDSMLGDKNRIAQVMFNLIGNAIKFTNV 462

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
           GS V +     N +   +V + G  I     K++FN F+        +  G GLGL+I  
Sbjct: 463 GS-VRVSVKAVNNNIEIAVIDTGIGIAPYAQKTLFNPFIQADGSITRRYGGTGLGLAISM 521

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             I    G++S+ S     +     IP
Sbjct: 522 HLIKKMDGNISLDSVLNVGSCFTVSIP 548


>gi|84385138|ref|ZP_00988170.1| two-component system sensory/regulatory protein-like protein (hybrid
            family) [Vibrio splendidus 12B01]
 gi|84379735|gb|EAP96586.1| two-component system sensory/regulatory protein-like protein (hybrid
            family) [Vibrio splendidus 12B01]
          Length = 1640

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 165/392 (42%), Gaps = 23/392 (5%)

Query: 412  TIWMFENLTVQV----DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
             ++    LT Q+    D               ++      +V   + +++ +N   + L+
Sbjct: 900  IVFWNRKLTKQIAIANDATEALRKAQHQLYNILNTSPIAASVVVEE-QVRYANDTAKRLF 958

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSVL 526
              E   L+   ++  I  + S   +     +L   ++      RK      + L+S  +L
Sbjct: 959  GVERTELNS-INVETIYNSLSDRDSLYKELNLKGKVVNRELVLRKFDGSSFVALVSYYLL 1017

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            E          T+    ++++  R    L E+ +    A + K+ F+ ++S+E+R+P+  
Sbjct: 1018 ELD----GEVATLFWAFDISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNA 1073

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            IIG + L   +     N     Y+E +  S   LL+++NDILD + ++AG + ++     
Sbjct: 1074 IIGLSYL---AIGEISNPVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFD 1130

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
                  +V + + +K  E  +++ +  D +L +  + D  RL Q+   ++ NA+ F+S G
Sbjct: 1131 PVTTFQDVIELMESKADEKQLKLSMSIDPELDTPLIGDPLRLFQVILNLIGNAIKFTSHG 1190

Query: 706  STVILKAARDNGDFIFS----VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            +  +     ++ D   S    V + G  I E+  + +F  F        R   G GLGL+
Sbjct: 1191 NVTLNVTHLESNDRSVSMKVVVSDTGIGISEENRRKLFQAFSQADSTTTRKFGGTGLGLN 1250

Query: 760  IVESFINLHGGHVSISSSDEGVTTINC--RIP 789
            I +  +   G  +S++S     +  +    +P
Sbjct: 1251 ISQKLVQAMGSKISVASVLGKGSEFSFVLTLP 1282


>gi|317150360|ref|XP_001823967.2| histidine kinase J7 [Aspergillus oryzae RIB40]
          Length = 1304

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 715 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 772

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 773 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 832

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
            +V  D  RL QI   ++ NA+ F+  G  V L   + + +        F FSV + G  
Sbjct: 833 DYVTGDPFRLRQIILNLVGNAIKFTEHGE-VKLTIRKSDREQCAANEYAFEFSVSDTGIG 891

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 892 IEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 951


>gi|197106173|ref|YP_002131550.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1]
 gi|196479593|gb|ACG79121.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1]
          Length = 553

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 156/376 (41%), Gaps = 23/376 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF------RSLWKTEENRL 474
                +   +       E +DH  + +    P GRI     AF      R +   ++ RL
Sbjct: 176 AHARADRARDEAETELREALDHQPQLLLTLYPGGRIL---NAFGADLLGRGVRGLKDERL 232

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                  +  A     +  +      AA + + D              +  LE S   L 
Sbjct: 233 PDLVGFEDRLAVEEALHVAAHEGSAEAAFVPAHDP-------------NGWLEVSFRRLG 279

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +      +       E  L +   +  + +  K+ F+ ++S+ELR+PL  I+GF+D++
Sbjct: 280 ANRIFAAVRDARAQRAREHELEKARISAEQQNAGKSRFLANMSHELRTPLNAIMGFSDIM 339

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +    G +  +  +Y E I  S + LL L+ND+LD++ ++A   +L        D +  V
Sbjct: 340 RQRLFGPMGDRYGEYAELIHESGSHLLELINDVLDMSKIEAERFELAREDFDARDAVGAV 399

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + +  +     + ++ +   +     ADR+ + QI   ++SNA+ F+ +G TV + A  
Sbjct: 400 LRLMRGQAERAGVTLRAVMPPEPLEAEADRRAVKQITLNLISNALKFTPRGGTVTVTAQG 459

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVS 773
                   V ++G  I     + +   F       QR  G GLGLS+V +F  LHGG ++
Sbjct: 460 AGETLELIVADSGVGIAPADLERLGRPFEQAGDAQQRAAGSGLGLSLVRAFAALHGGEMA 519

Query: 774 ISSSDEGVTTINCRIP 789
           I S     TT+  R+P
Sbjct: 520 IESGVGEGTTVTVRMP 535


>gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
 gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
          Length = 949

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 126/692 (18%), Positives = 245/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKADPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  + + 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|149187870|ref|ZP_01866166.1| sensory transduction protein kinase [Vibrio shilonii AK1]
 gi|148838266|gb|EDL55207.1| sensory transduction protein kinase [Vibrio shilonii AK1]
          Length = 916

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 10/250 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +    E  +    E   +A+  K+SF+ ++S+E+R+PL  IIG + +L  S   +L+  
Sbjct: 375 HERRENEHRMLAAKEEAERANVAKSSFLANMSHEIRTPLNGIIGMSGILSES---NLDPI 431

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  Y+  I  SS  LL L+NDILD++ +++G + ++  +  L ++  +    + +K  E 
Sbjct: 432 QRDYLNTIDTSSQTLLILINDILDISKIESGNLLISLHSSNLREIAYDTIAIVMSKAKEK 491

Query: 666 NIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFI 720
           ++++++    ++    + D  RL QI   ++SNA+ F++KG       + +         
Sbjct: 492 DLQLQIRFSPQMPHMLIIDDHRLRQILMNLMSNAVKFTNKGHVRMEINVTEIDEQRCSIY 551

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F++ + G  I +D   S+F  F         Q  G GLGL+I    + L GG++ I S  
Sbjct: 552 FAIVDTGIGIDKDKQDSIFKPFTQEDSSVTRQYGGTGLGLAISSQLVELMGGNIEIDSEK 611

Query: 779 EGVTTINCRI 788
              +     I
Sbjct: 612 GKGSRFFFTI 621


>gi|78221237|ref|YP_382984.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78192492|gb|ABB30259.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 763

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 24/379 (6%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           EN++ +    T     +      +  ++EG+AV   +G++ L NPA + +++        
Sbjct: 403 ENVSER---TTALQMEMGRLEAILTGMAEGIAVTDREGKVILFNPAAQRIFEMVPP---- 455

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPN 535
               R +  T        +   L   + T  + +  + +  +E+ +    L  S+ P  +
Sbjct: 456 ----RVMGHTLEELCAGGEFCALADYVRTMKETDDLTPRRDVEMSMKGKKLTISLSPFCD 511

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
               L  V ++                   D +K  F+  VS+EL++PLT+I G    + 
Sbjct: 512 QGGALAGVVMSVRDVTGEE---------DVDRVKTEFISTVSHELKTPLTSIKGSLQFIH 562

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G     + + +     ++  L+ LVNDILD+A +++G ++       +  L+    
Sbjct: 563 DRGEGFG-GMEGELLSVCLRNTDRLIRLVNDILDIARIESGRLEFVPEPQDVRTLVTHSI 621

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +A    E+++ ++      L     DR RL+Q+ + +LSNA+ FS +G  V++ A R 
Sbjct: 622 EELAGYALEHDVSVENRCGQDLPPIYGDRDRLVQVLTNLLSNAIKFSPRGERVVVTAERT 681

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +     SV + G  I       +F +F    N+ R Q  G GLGL+I +  +  H G + 
Sbjct: 682 SNYVAISVGDRGREILWSDRGKLFKKFQLLDNSDRRQHGGTGLGLAICKEIVEHHHGRIF 741

Query: 774 ISSSDEGVTTINCRIPSKE 792
            +    G       +P  E
Sbjct: 742 YNEGTGGGNVFTFTVPVYE 760



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 25/279 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   +  ++     IL  +   IA+ D+   +   N +   ++E     +         
Sbjct: 407 ERTTALQMEMGRLEAILTGMAEGIAVTDREGKVILFNPAAQRIFE-----MVPPRVMGHT 461

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-PRG---- 410
           LE L +  +     ++                 +D      G+ L + ++    +G    
Sbjct: 462 LEELCAGGEFCALADY----VRTMKETDDLTPRRDVEMSMKGKKLTISLSPFCDQGGALA 517

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV--AVFGPDGRIKLSNPAFRSLWK 468
           G +    ++T + D+        +V+ E I  +S  +   +    G ++  +        
Sbjct: 518 GVVMSVRDVTGEEDV-------DRVKTEFISTVSHELKTPLTSIKGSLQFIHDRGEGFGG 570

Query: 469 TEENRLS-PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
            E   LS    +   +    +   + +         +    D R  +  ++E L+   LE
Sbjct: 571 MEGELLSVCLRNTDRLIRLVNDILDIARIESGRLEFVPEPQDVRTLVTHSIEELAGYALE 630

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           + +  + N           D  R  + LT       K  
Sbjct: 631 HDVS-VENRCGQDLPPIYGDRDRLVQVLTNLLSNAIKFS 668


>gi|134291091|ref|YP_001114860.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134280|gb|ABO58605.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 989

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 109/649 (16%), Positives = 224/649 (34%), Gaps = 62/649 (9%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGESRK 242
             ++L      + +   S+   V   D  G + + N++ +  T  +      + + E   
Sbjct: 129 AERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLSEVFS 188

Query: 243 LFKEEIKKRMIS-------SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEA 289
           L  E     +         + +       T+     G++   +      +       G  
Sbjct: 189 LHDENTHAPIEDPMAAVLQTGSDGGLPARTILRARGGSDLPVECTGTPMTDERGVRQGIV 248

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELWEIDLA 344
            +  DV+++    +      E    L +A     + +++ +     H R F     I   
Sbjct: 249 IVFRDVTQKRRAQEA-EILRETNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSNI-YE 306

Query: 345 FLATNPSNDELLEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           +L  +     L      +   P+  +       +           ++     +G    V+
Sbjct: 307 WLGFDTPQARLDYEAYMSVLHPDHRDSTDRAVASFLESGDGLFELENRLRHRDGSDRWVL 366

Query: 404 VTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           V    R          +    ++T     E       +    T ++ + GVA    DGR 
Sbjct: 367 VRGTARRDATGKPVRFVGSLVDITELKMTEQALRASEERFRGTFENAAVGVAHCDLDGRF 426

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-------RYYNESDGWDLFAAI-ITSFD 508
              N     +     + L        I A  S       R   E         + +  FD
Sbjct: 427 LRVNQRSGEIVGWPRDALQQRRLHELIHADFSVASTERFRLLTEGRLKHYSEEVPLVRFD 486

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            ER  +  ++ L  D+  +        A  ++   ++++    E  +    +A   A   
Sbjct: 487 GERVWVTLSVALQHDASGQT-------AHVIVIIQDISERKALEETVRVAKDAAEAASRA 539

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  I+G+  +L+      L+++Q   V  I  S   LL L+NDIL
Sbjct: 540 KDQFLANISHELRTPLNGILGYAQILQRDAR--LDTRQLASVGVIEQSGQHLLTLINDIL 597

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D A + AG ++L    + L   L  + + +A +  +  + +  ++   L + V  D +RL
Sbjct: 598 DFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERRL 657

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +L+NA+ F+  G   +  +    G   F V++ G  +  D  +++F  F     
Sbjct: 658 RQVLLNLLANAVQFTDHGEVTLSVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQAGD 717

Query: 748 RG--------QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                               I    + + GG + ++SS    +     +
Sbjct: 718 HTRRGGGAGLGLA-------ISRQLVRMMGGEIEVTSSAGEGSVFGFEL 759



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 69/218 (31%), Gaps = 16/218 (7%)

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS-FDLVAETQ----NDCAIKIEGR 158
           D PQ   D  ++ + L   H     +A     + G   F+L    +    +D  + + G 
Sbjct: 311 DTPQARLDYEAYMSVLHPDHRDSTDRAVASFLESGDGLFELENRLRHRDGSDRWVLVRG- 369

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
            +   A  + +   G   ++ E  +  + L      F+  F++    V H D  G  L  
Sbjct: 370 TARRDATGKPVRFVGSLVDITELKMTEQALRASEERFRGTFENAAVGVAHCDLDGRFLRV 429

Query: 219 NISYKKNTE-TEGIVFQKAIGESRK---LFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           N    +        + Q+ + E            + R+++   L+    E       G  
Sbjct: 430 NQRSGEIVGWPRDALQQRRLHELIHADFSVASTERFRLLTEGRLKHYSEEVPLVRFDGER 489

Query: 275 KSYKIVRVLNSFGEAGIA------IDVSKEITVNDQLT 306
               +   L        A       D+S+   + + + 
Sbjct: 490 VWVTLSVALQHDASGQTAHVIVIIQDISERKALEETVR 527


>gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074733|gb|ADJ64132.1| sensor histidine kinase/response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1145

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 6/261 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT L    +    + +  L    EA   A+  K+ FV  +S+ELR+PL +I+G+  +L
Sbjct: 654 ERQTNLLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQIL 713

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 ++   +   +  I  S   LL+L++ +LD+A ++AG M+L    + L   L ++
Sbjct: 714 --HVDATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQI 771

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               A +  +  +  +    G+L   V AD++RL QI   +L NA+ F+  G  V L+  
Sbjct: 772 VGMFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGG-VTLRLR 830

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V + G  I +D  + +F  F  ++    R   G GLGL+I    +++ GG 
Sbjct: 831 YAREIAYFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGE 890

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +S+ S     ++ + +I   E
Sbjct: 891 LSVQSQVGQGSSFHLKIYLPE 911


>gi|228951472|ref|ZP_04113578.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808179|gb|EEM54692.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 883

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 465 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHNNNLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 705 SNVGEGSTFTVYIP 718


>gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 127/692 (18%), Positives = 246/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFIGYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|66813420|ref|XP_640889.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74855522|sp|Q54U87|DHKA_DICDI RecName: Full=Hybrid signal transduction histidine kinase A
 gi|60468777|gb|EAL66777.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2150

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/329 (24%), Positives = 148/329 (44%), Gaps = 31/329 (9%)

Query: 487  CSRYYNESDGWDLFAAIITSFDDE----------RKSLQGTLELL-SDSVLEYSIIPLPN 535
             +   +  D     + I  +   E          RK   G L ++    V+        N
Sbjct: 1294 LAELIHPDDKQKFISEIKKTITRETSIMEIECRMRKKYGGYLYIIMRGKVVSNETSFKDN 1353

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +  M   +    S +  + L  + EA  +A++ K++FV  VS+E+R+PL+ +IG +DLL 
Sbjct: 1354 SLRMAGTLRDMTSRKDMQRLILEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLL 1413

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +   +L+ +Q  YV+ I  SS  LL ++NDILD + +++  +K+      + +    V 
Sbjct: 1414 ET---NLSEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVI 1470

Query: 656  QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              ++   ++ ++ I +     +   +  D  R+ Q+   +LSNA+ F+S+G  +    + 
Sbjct: 1471 HMLSVAAND-DVDILLRVPPNVPRIIFGDAMRMRQVLLNLLSNAIKFTSRGHVLT-DISV 1528

Query: 715  DNG-----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
            D+                ++++ G  IP+ +  S+F  F    +   R   G GLGLSI 
Sbjct: 1529 DDSIPPTNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSIT 1588

Query: 762  ESFI-NLHGGHVSISSSDEGVTTINCRIP 789
            +  I  + GG + +SS     +   C IP
Sbjct: 1589 KRLIEEVMGGTIQVSSIVGQGSKFKCIIP 1617


>gi|300716381|ref|YP_003741184.1| Sensor protein [Erwinia billingiae Eb661]
 gi|299062217|emb|CAX59334.1| Sensor protein [Erwinia billingiae Eb661]
          Length = 1192

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 166/391 (42%), Gaps = 21/391 (5%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G  +++ + +  + +L  + N  +    E ++ +   V++     R+   N  +      
Sbjct: 540 GWALYLRQQIKRKAELRRQLNNQLSQLREVVNSMPFPVSLRDNSARLIYCNQRYLEETGI 599

Query: 470 EENRLSPGTHIRN---IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +   S GT +     +       +      ++ A   +  +D R  L    +      +
Sbjct: 600 -DYDASLGTTMEQSPGLRTPEQASFYHQQMLEVIATDRSIVEDRRYDLYDNPDSSIGLTV 658

Query: 527 EYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              I P  ++       +  ++++T+       L +  E    ++  K+ F+  +S+E+R
Sbjct: 659 YQWIQPWHDSDGKVMGVIGGWMDITEREALFAELRDAKERAEDSNRAKSVFLSTMSHEIR 718

Query: 582 SPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +P+  IIG  D+ LK  +   ++    Q +E    S+  L+ L+ DILD++ ++ G ++ 
Sbjct: 719 TPMNAIIGMLDMALKKGRQKEID---LQALEVAYESADSLVGLIGDILDISRIEGGHLEF 775

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           N  T+ L  L++ + +       + NI + K   D  +   +AD  R+ Q+ + +LSNA+
Sbjct: 776 NPETVNLGKLIDNMLKVYQGLAIDKNITLSKHYPDEPIVDVLADPLRIKQVLANLLSNAI 835

Query: 700 DFSSKGS-TVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
            F+ +G  T+ L   R  G     +   V+++G  I      ++F  F    +R    G 
Sbjct: 836 KFTDQGGVTLTLSQTRVPGSSSVQYCIEVQDSGIGIAAASQAALFQPFSQAENRRA--GT 893

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           GLGL I  +      G +++SS     T + 
Sbjct: 894 GLGLYISRTICENMQGSLTLSSEKGVGTRVR 924



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 61/157 (38%), Gaps = 25/157 (15%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-----LATNPS- 351
              +N+QL+   E+++++   +++ D +  L + N+ ++E   ID        +  +P  
Sbjct: 556 RRQLNNQLSQLREVVNSMPFPVSLRDNSARLIYCNQRYLEETGIDYDASLGTTMEQSPGL 615

Query: 352 ---------NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
                    + ++LE + +   + E   +  +     S+  +       WH  +G+ +  
Sbjct: 616 RTPEQASFYHQQMLEVIATDRSIVEDRRYDLYDNPDSSIGLTVYQWIQPWHDSDGKVM-- 673

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
                   G I  + ++T +  L  +     +   ++
Sbjct: 674 --------GVIGGWMDITEREALFAELRDAKERAEDS 702



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 22/185 (11%)

Query: 159 VSGSCAFLRILSLDG----IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            SG    L I  + G    +  ++       ++L+N +S  + + +S+ F V  RD +  
Sbjct: 526 ASGIFTLLIIALITGWALYLRQQIKRKAELRRQLNNQLSQLREVVNSMPFPVSLRDNSAR 585

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
           +++ N  Y + T  +         E     +   +        LE    +  S +E    
Sbjct: 586 LIYCNQRYLEETGIDYDASLGTTMEQSPGLRTPEQASFYHQQMLEVIATDR-SIVEDRRY 644

Query: 275 KSYKIVRVLNSF-----------------GEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
             Y                          G  G  +D+++   +  +L    E   +   
Sbjct: 645 DLYDNPDSSIGLTVYQWIQPWHDSDGKVMGVIGGWMDITEREALFAELRDAKERAEDSNR 704

Query: 318 AIAIF 322
           A ++F
Sbjct: 705 AKSVF 709


>gi|239787730|emb|CAX84245.1| Sensor protein [uncultured bacterium]
          Length = 992

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 11/251 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R E  L    E    ++  K  F+  +S+E+R+P+  ++G  DL+  +    L  
Sbjct: 423 FIERRRWEEKLQLAKEEAEASNRAKTDFLAAMSHEIRTPMNGVLGMADLVLRT---PLTD 479

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  YVE I  S   LL ++NDILD++ + AG + L      L +++ +V    A ++  
Sbjct: 480 QQRHYVETIHRSGRTLLRIINDILDISKIHAGHLALELLQFDLAEVVQDVIDMFAERVKT 539

Query: 665 NNIRIKVISDGK--LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--- 718
             +   +    +      + D  RL QI   +L NA+ F+ +GS  + ++   +      
Sbjct: 540 KGLTFAIEFPEEGMPVHLLGDPYRLSQILFNLLGNAIKFTERGSIGLFVEVLEERAWDVL 599

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V + G  I  D C+ +F  F        R   G GLGL+I +  + +  G +++ S
Sbjct: 600 LRFKVTDTGIGISPDYCQRLFQAFTQEDLSITRKFGGTGLGLAITQKLVGMMAGELTVES 659

Query: 777 SDEGVTTINCR 787
           +    +     
Sbjct: 660 TQGQGSIFQFT 670


>gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116]
          Length = 1054

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 12/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+    +  +   KA + K+SF+ ++S+E+R+PL  +IG +++L  +   SL + Q  Y
Sbjct: 377 QAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---SLTATQKDY 433

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  SS +LL+L+NDILD + +++G++ ++  +  + + + ++   ++ K  E  I +
Sbjct: 434 VDTIETSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGINL 493

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSV 723
           KV IS       + D  RL Q+    +SNA+ F+ KGS V L          N    FSV
Sbjct: 494 KVSISRNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGS-VHLSVTTHGVSGANAVMEFSV 552

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  I E   K++F  F    +   R   G GLGL+I    + L GG + + S  E  
Sbjct: 553 QDSGIGIDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGKIQLESEKEHG 612

Query: 782 TTINCRI 788
           +    +I
Sbjct: 613 SRFFFQI 619


>gi|121535086|ref|ZP_01666903.1| multi-sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306336|gb|EAX47261.1| multi-sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 593

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 157/383 (40%), Gaps = 27/383 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
              NL  ++D + K     K + E  + H+   V +    GR+  +N    SL+      
Sbjct: 231 TLNNLAARLDDKLKEIVAQKHKLELILQHMDNAVLLLDRYGRVTDANLRAASLFGITGAM 290

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L       NI    +   +++   +  A         R +L G     +  V +  + PL
Sbjct: 291 LGQH----NIQVIGNSLLDKA-VRETVATGENRLIMLRTNLHG-----AKRVFQVFLAPL 340

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            N           D              L++  E +  FV + S+EL++PLT I GF   
Sbjct: 341 GNDGGDGVLTVFHDIT-----------VLQEIQERQAEFVANASHELKTPLTAIKGFAAT 389

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI--MKLNYSTIVLNDLL 651
           L    +    +  +++V  I   +  +  LV+D+L LA++DA     +       +  + 
Sbjct: 390 LLDGAIRE-PALATKFVTIIHDEAERMNRLVDDLLQLASLDARETGQQARLEPTDIYKVA 448

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             V + ++ +     + + + +  +  + +A+   L Q+   +L N++ ++ +G  +++K
Sbjct: 449 AAVVEELSAQWRAKRLSVLLDAPARPLAVMANPDWLRQVLVNLLDNSIKYTPEGGKILVK 508

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
             + +   +  V+++G  IP      +F+RF        RR  G GLGL+IV+  I   G
Sbjct: 509 WWQASDKAVVMVQDSGIGIPAKDLPFIFDRFYRVDRARSRRAGGTGLGLAIVKHIIETLG 568

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G + + S  +  TT    +P  +
Sbjct: 569 GKIDVVSEPDAGTTFTFTLPLAK 591



 Score = 41.5 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 20/207 (9%)

Query: 113 LSFENWLKFHHYIKLSK--ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS 170
           ++F   L   +   L +     +L  EGQ  D     +    I+I G    + A      
Sbjct: 184 IAFSIRLARKYTAPLEEITDVARLISEGQ-LDKRVHIKTGDEIEILGHTLNNLA------ 236

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
                   A    K K++       +++   +D  V   D+ G +  AN+         G
Sbjct: 237 --------ARLDDKLKEIVAQKHKLELILQHMDNAVLLLDRYGRVTDANLRAASLFGITG 288

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEA 289
            +  +     + +    + K +  + A  +N    + T  HG  + +++    L + G  
Sbjct: 289 AMLGQ--HNIQVIGNSLLDKAVRETVATGENRLIMLRTNLHGAKRVFQVFLAPLGNDGGD 346

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLT 316
           G+         + +      E + N +
Sbjct: 347 GVLTVFHDITVLQEIQERQAEFVANAS 373


>gi|146301663|ref|YP_001196254.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146156081|gb|ABQ06935.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 662

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 11/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  + +   +A   K+SF+ ++S+E+R+PL  IIGFTDLL  +K   LN+ Q  Y+  +
Sbjct: 168 QLDAQKKIAERAVLAKDSFLANMSHEIRTPLNAIIGFTDLLAQTK---LNAVQRDYINSV 224

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL +VNDILDL+ +++G + +      L + L  V   +  K+    +   +  
Sbjct: 225 QIAGENLLLIVNDILDLSKMESGNLTIEAVPFNLKNTLKHVYNLLKIKVP-KEVEFNLFL 283

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGS 728
           D  +    + D  RL QI   ++ NA+ F+ +G   +    ++    +    FSVK+ G 
Sbjct: 284 DADMPEMVIGDEGRLNQILVNLIGNALKFTHEGEVTVSVKMIEETETHYSLKFSVKDTGI 343

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP    K++F RF        R   G GLGL+IV+  I L    +++ S     +    
Sbjct: 344 GIPPKKLKTIFERFTQAEDSTTRKFGGTGLGLNIVKQLIELQNAEINVKSEQNKGSEFFF 403

Query: 787 RI 788
            I
Sbjct: 404 VI 405


>gi|262164925|ref|ZP_06032663.1| sensor protein TorS [Vibrio mimicus VM223]
 gi|262027305|gb|EEY45972.1| sensor protein TorS [Vibrio mimicus VM223]
          Length = 968

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 124/261 (47%), Gaps = 5/261 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +      +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTHQLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   SL S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++ +   L  L+ 
Sbjct: 494 LLQET---SLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    +  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRI 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
               +     F+V+++G  I E    S+F+ F       +++G GLGL+I    +   GG
Sbjct: 611 SQDPEGQGIRFAVEDSGIGIAEQDQASLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGG 670

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + +SS     +  +  +P +
Sbjct: 671 ELQLSSQLGQGSCFSFILPLQ 691


>gi|229149317|ref|ZP_04277554.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
 gi|228634131|gb|EEK90723.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
          Length = 896

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDTKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|192359994|ref|YP_001980883.1| MmoS [Cellvibrio japonicus Ueda107]
 gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
          Length = 803

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 17/251 (6%)

Query: 550 RAERALTEKNEALRKAD--EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             E  L  + +     D    K+ F+  +S+E+R+P+  +IG  D+L+ +    L+  Q 
Sbjct: 257 EKEEKLETRRQKNAAEDASRAKSQFLATMSHEIRTPMNGVIGMLDMLRDT---PLDENQK 313

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y++ I  S   LL+++NDILD + ++AG M+L      L+DL+    Q      ++ NI
Sbjct: 314 HYIDVIHRSGETLLSIINDILDYSKIEAGKMQLEEMVFELDDLVENCIQLFGATANKRNI 373

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------D 718
            +    +  +      D  RL QI   +L NA  F+ +G  V L+   DN          
Sbjct: 374 ELFGGLNPDVPRRLRGDPTRLRQIIINLLGNAFKFTEEG-FVSLEVGLDNTALQAEGRLM 432

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V+++G  I  +   ++F+ F        R   G GLGL+I +S   L GG + + S
Sbjct: 433 LRFVVQDSGIGIDPNSASNLFDSFNQADASTTRKYGGTGLGLAICKSLAELMGGRIGVKS 492

Query: 777 SDEGVTTINCR 787
           +          
Sbjct: 493 AKGEGAQFWFT 503


>gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. 493-89]
 gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. H 2687]
          Length = 949

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 126/692 (18%), Positives = 245/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMESFFLPGTLPMGVTILDENG------HTLISLTGPESKIKADPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  + + 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EDL933]
 gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. Sakai]
 gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EC4024]
 gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK966]
 gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. G5101]
 gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. LSU-61]
 gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1125]
 gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1044]
          Length = 949

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 126/692 (18%), Positives = 245/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 106 FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 164

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 165 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 225 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKADPRWMQERSWFG 278

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 279 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 326

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 327 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 384

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 385 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 431

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 432 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 482

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  + + 
Sbjct: 483 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIE 539

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 540 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 599

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 600 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 658

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 659 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690


>gi|138895266|ref|YP_001125719.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266779|gb|ABO66974.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 456

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+      L    + +N F+  +S+ELR+PLT + G+ D+ +   +     ++++Y+  
Sbjct: 219 KAIQTLARDLEYLKKERNEFLASISHELRTPLTYVKGYADIARRPNME--EEERNRYLSI 276

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  LV D+ +LA +D    +++     L   L ++   +        + +   
Sbjct: 277 IYEEAEHMQKLVKDLFELAKMDQHSFQIHKEPTNLCSFLKKLHDKMHPAFQAKKMSLVYQ 336

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +  + +   D++R  Q+   +L NA+ ++ +GSTV + A  +  + +  V + G  IPE
Sbjct: 337 CEKNI-TVHIDQKRFEQVMINLLDNALKYADQGSTVSIDARAEKDNIVMIVSDEGRGIPE 395

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F RF        R   G GLGL+I +  +  HGG +  +S     T +   +P
Sbjct: 396 EDLPHIFERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGSIYAASEYGKGTNMIITLP 454


>gi|93609097|gb|ABF13477.1| DRK1 histidine kinase [Ajellomyces dermatitidis]
          Length = 1274

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 697 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 754

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 755 SLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSLAYQVDSSVP 814

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
            +V  D  RL QI   ++ NA+ F+  G  V L  +R + +        F FSV + G  
Sbjct: 815 DYVTGDPFRLRQIILNLVGNAIKFTEHGE-VKLAISRSDREECKDNEYAFEFSVSDTGIG 873

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     ++ +  
Sbjct: 874 IEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFT 933


>gi|332995263|gb|AEF05318.1| GAF sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 695

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 170/391 (43%), Gaps = 29/391 (7%)

Query: 419 LTVQVDLETKYNT------LVKVQGETIDHLSE--GVAVFGPD---GRIKLSNPAFRSLW 467
           +  +V  E   +        ++ Q   ++ ++E  GV  +  D   G +K S    R L 
Sbjct: 149 IGAEVAREQALSEIISQKNALEEQNALLNQITELAGVGTWELDVETGALKWSASLKRMLQ 208

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
            +E+  ++P   +  IA    R   ES   +    I  + +D     +   +      LE
Sbjct: 209 MSEKQDITPSHALNFIANKKVRNVYESKMEE----IAINGNDWAYEFEVITDGGEKRWLE 264

Query: 528 YSIIPLPNAQT----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
               P+    T    +    ++T+     ++L +K     +A + ++ F+ ++S+E+R+P
Sbjct: 265 SRAHPIMKNGTCLKIIGATRDITERFNTTQSLKQKTAIAEQALKARSEFLANMSHEIRTP 324

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  + G  + L ++   SLN KQ +Y      S+  LLN+VNDILD + +D+G M  +  
Sbjct: 325 IHGVQGMLETLCST---SLNEKQKEYTHVAMRSAESLLNIVNDILDFSKIDSGHMTYDVE 381

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
            +   +L+ +          +  I     +     + F+AD  RL QI   +++NA+ F+
Sbjct: 382 PVNFKELIEQQIPMFRRLADKKGIEFITETAAVSDTLFLADSLRLSQILMNLMNNAVKFT 441

Query: 703 SKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            KGS  +  +  +           V + G  I ++  K +F+ F+      QRR  G GL
Sbjct: 442 DKGSIKISTRCTKYGAGRFRVKLIVTDTGIGISDEQQKVIFSPFLQAEESTQRRFGGTGL 501

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GL+IV + +  + G+V +SS+          
Sbjct: 502 GLAIVNNIVEHYDGNVEVSSAIGEGARFIVT 532


>gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C]
 gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C]
          Length = 1828

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 26/311 (8%)

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            +    DE ++ Q  L+  +  + E +   L   Q     V  T+   A + L E+ E L 
Sbjct: 1288 LRERSDELENRQKALQAANAELEEKA--ELLAQQNRDIEVKNTEIEEARQVLEERAEQLA 1345

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ E I  + + LL L
Sbjct: 1346 VSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADENLSPKQVEFAETIHGAGSDLLQL 1405

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
            +NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  +   
Sbjct: 1406 INDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHT 1465

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KAARDNGDFI-F 721
            D QRLLQ+   +LSNA+ F+  G+  ++                         + D I F
Sbjct: 1466 DEQRLLQVLRNLLSNAVKFTDNGAVELVIRPAGADVPTAIREQLLEAGSLRDADADLIAF 1525

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            SV + G  I       +F  F         +  G GLGLSI      L GG +  +S   
Sbjct: 1526 SVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPG 1585

Query: 780  GVTTINCRIPS 790
              +T    +P 
Sbjct: 1586 RGSTFTLYLPL 1596


>gi|228926141|ref|ZP_04089217.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228833506|gb|EEM79067.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 896

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDN------G 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS       +      D+       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
 gi|300075808|gb|ADJ65207.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
          Length = 765

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 14/256 (5%)

Query: 544 NVTDSVRAERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                 R E AL  T   E    A+E K+ F+  VS+E+R+P+  I+G ++LL  S    
Sbjct: 321 WRQVRRREEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMES---G 377

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+SKQ  Y + I  ++  L+ ++NDILD + +++G + L         L+ E+       
Sbjct: 378 LSSKQRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPS 437

Query: 662 MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--- 717
           +   +++  +  D  +  S V D  RL Q+   +LSNA+ F+  G   +  +AR +    
Sbjct: 438 LQRKDVQFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGP 497

Query: 718 ---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 F++ + G  I  +  + +F  F        RR  G GLGL+I ++ + L GG +
Sbjct: 498 SRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTI 557

Query: 773 SISSSDEGVTTINCRI 788
           +  S     T  +  I
Sbjct: 558 ACQSIPGESTRFSFEI 573


>gi|119491241|ref|XP_001263209.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
 gi|119411369|gb|EAW21312.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
          Length = 2332

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A   K+ F+ ++S++LR+P+  +IG ++LLK +   +LN +Q +YV
Sbjct: 1869 AEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLKGT---NLNKEQDEYV 1925

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1926 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGLVTI 1985

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVK 724
               D      V   D  RL QIF  +LSN+  F+ KGS TV  K +R+  +      +V 
Sbjct: 1986 EDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVS 2045

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F            G GLGLSI ++ I  + GG + + S+    
Sbjct: 2046 DTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVG 2105

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2106 TTVTFHL 2112


>gi|326474208|gb|EGD98217.1| DRK1 histidine kinase [Trichophyton tonsurans CBS 112818]
          Length = 1331

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 113/250 (45%), Gaps = 24/250 (9%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 717 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 774

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 775 SLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQVDSSVP 834

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------DNGDF 719
              + D  RL QI   ++ NA+ F+  G  V L+  +                  D   +
Sbjct: 835 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VTLEIKKHVPPPPADGEPEREVCADDEYAY 893

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            FSV++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG V ++S 
Sbjct: 894 EFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSE 953

Query: 778 DEGVTTINCR 787
               +T +  
Sbjct: 954 YGRGSTFHFT 963


>gi|254524346|ref|ZP_05136401.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219721937|gb|EED40462.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1167

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 149/364 (40%), Gaps = 22/364 (6%)

Query: 446  GVAVFGPDGR--------IKLSNP-----AFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            G  + GPD R        +  +NP      FR     ++     G   R ++   +  Y 
Sbjct: 663  GTLLLGPDDRDLQIDARLLSYANPQGNRYRFRVRGYDQDWVEQGGDGQRTLSRLPTGSYV 722

Query: 493  ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                        T     +  +         ++  Y +I       +   + V    R +
Sbjct: 723  IEVQAATANGAWTPSQQLKVKVLPPWWRSGMAIFGYILIGSLLLLILAWSIRVRLRRRQQ 782

Query: 553  RALTEKNEALRKA-DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              LT   + L +   + K+ F+  + +E+R+P+T ++G ++LL  +    L+  Q  Y  
Sbjct: 783  WQLTVHKQELAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLAT---PLDPVQRSYAG 839

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I  + + LL LVND LDLA ++AG ++L+     L  LL++V+  +     +  +  + 
Sbjct: 840  SIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQVLMQPMAKQRRLEFQR 899

Query: 672  ISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSS 729
             +D +   S   D  R+ QI   +L NA+ F+ +G   + ++   + G   F V ++G  
Sbjct: 900  GNDPQGPISVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLEDNGGGVCFEVYDSGPG 959

Query: 730  IPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +  + +F+RF             G GLGL+I +      GG + + SS         
Sbjct: 960  INAEQQERLFHRFEQADGPRTASRYGGSGLGLAICQELAVAMGGRIDVESSPGKGARFRV 1019

Query: 787  RIPS 790
            R+P 
Sbjct: 1020 RLPL 1023


>gi|153832905|ref|ZP_01985572.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01]
 gi|148870828|gb|EDL69727.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01]
          Length = 859

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 151/394 (38%), Gaps = 24/394 (6%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
            G  I  F+++   ++    +     K   +  +     + V+  +  +   NPA R   
Sbjct: 332 GGSDIEEFDHIGSTLESTFEELEAQKKSFRDLFNFALSPIMVWSEESVLIQMNPAARKEL 391

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             E++        +      + +   +        +     ++      +   +   +  
Sbjct: 392 VIEDDHEIMHPVFQGFKEKLTPHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDI-- 449

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                   +  ++   ++T  + AE+          K+ + +  F+  +S+E+R+P+  I
Sbjct: 450 --------SGIIVQGQDITTLIEAEKQSNIARREAEKSAQARADFLAKMSHEIRTPINGI 501

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LLK S       +Q   ++ +  S   LL ++NDILD + ++ G   +       
Sbjct: 502 LGVAQLLKDSVD---TQEQKNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSF 558

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            D +  ++           + + + ++         D+ RL QI   ++SNA+ F+  GS
Sbjct: 559 TDTMRTLENIYRPICTNKGVELVIENELDPNVEIFTDQVRLNQILFNLVSNAVKFTPTGS 618

Query: 707 TVILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
            + L A        +N   +  + + G  I  D    +F  FV       R   G GLGL
Sbjct: 619 -IRLHAELEQFYGAENSVLVVELTDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGL 677

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +IV++ +++  G V + SS    TT    +P K+
Sbjct: 678 TIVKNLVDMLEGDVQVRSSKGVGTTFVITLPVKD 711


>gi|119498321|ref|XP_001265918.1| two-component osmosensing histidine kinase (Bos1), putative
           [Neosartorya fischeri NRRL 181]
 gi|119414082|gb|EAW24021.1| two-component osmosensing histidine kinase (Bos1), putative
           [Neosartorya fischeri NRRL 181]
          Length = 1336

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 14/240 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +   + 
Sbjct: 751 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYTREMLNVVHNLAN 808

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 809 SLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVDNTVP 868

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              + D  RL QI   ++ NA+ F+  G  V L   + + +        F FSV + G  
Sbjct: 869 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VKLTIRKSDREQCAPNEYAFEFSVSDTGIG 927

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ED    +F+ F        RR  G GLGLSI +  +NL GG V ++S     +T +  
Sbjct: 928 IEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT 987


>gi|939724|gb|AAA87840.1| putative sensor kinase; regulatory protein for production of
           antifungal antibiotics [Pseudomonas fluorescens Pf-5]
          Length = 917

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V      +  +       S+++ G 
Sbjct: 387 YRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|71908424|ref|YP_286011.1| PAS [Dechloromonas aromatica RCB]
 gi|71848045|gb|AAZ47541.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1023

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 99/552 (17%), Positives = 209/552 (37%), Gaps = 65/552 (11%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQFHN--RSFVELW--EIDLAFL 346
           +S+  ++ + L +    + +L       I + D++     H    S  + +   ID   +
Sbjct: 321 ISQGGSLTETLENLARDVESLHPGMLCSILLLDEDGLHLRHGAAPSLADFYCQAIDGVAI 380

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS------SETHKDTWHLPNGQTL 400
                +     F+     + +    + W++ +    ++      S+  K+      G   
Sbjct: 381 GEGVGSCGTAAFIGERVIVEDIQRHEYWRDYVELARRADLGSCWSQPFKNREGRVLGTFA 440

Query: 401 HVIVTSN-PRGGTIWMFENLTVQVDL-------ETKYNTLVKVQGETIDHLSEGVAVFG- 451
                   P    I + E+     +L       E+      ++    +D+ ++ + +   
Sbjct: 441 IYHRQPTQPSAAEIALIEDYASLAELAVESAQTESALEKSRELYRLIVDNSNDVIWLMAL 500

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRN--------IAATCSRYYNESDGWDLFAAI 503
           P  +    +P+   +       +                I A   +        D+    
Sbjct: 501 PAMKFTYVSPSVLRMRGWTAEEIMAQPLEAASTPESTLLIKAQLKKNLELLRAGDMRGRF 560

Query: 504 ITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            T+  D+  +       E+++  +L+ S  P   +Q +    +VT+  RAE  L +    
Sbjct: 561 ATTEVDQPCKDGRIIHTEVVTTLLLDESGQP---SQILGVTRDVTERKRAEAELEQYRHH 617

Query: 562 LRKA------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           L K                   +  K++F+ ++S+ELR+P+  I+G TDL+      S +
Sbjct: 618 LEKMVEDRTAALSDAKEAAEAANRAKSTFLANMSHELRTPMNAIMGMTDLVLRR---STD 674

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q + +  +  +S  L+ ++NDILDL+ ++A  + L      L ++ + +K  +  ++ 
Sbjct: 675 DRQREQLSKVVQASRHLMAVINDILDLSKIEAERLTLEKIPFRLTEIFDNLKNLVGERVA 734

Query: 664 ENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-- 718
           E  + +K+    +L + V   D  RL QI   +  NA+ F+++GS  + +    D+    
Sbjct: 735 EKGLLLKISKAPELSNMVFRGDPLRLGQILLNLTGNAVKFTAEGSIALSVSVVEDHPHDV 794

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              F V + G  I       +F  F        R   G GLGL+I      L GG++ + 
Sbjct: 795 VLRFEVCDTGIGIAAVDQGRLFTAFEQADGSTTREYGGSGLGLAISRRLAKLMGGNIGVE 854

Query: 776 SSDEGVTTINCR 787
           S+    +T    
Sbjct: 855 STPGVGSTFWFT 866


>gi|83776228|dbj|BAE66347.1| unnamed protein product [Aspergillus oryzae]
          Length = 1134

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 13/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +     
Sbjct: 613 REAAELANQSKSEFLANMSHEIRTPMNGIIGMTQLALDT--DDLPPPTREMLNVVHNLGN 670

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL- 677
            LL +++DILD++ ++A  MK+      L   + +  + +A +  E ++ +    +  + 
Sbjct: 671 SLLVIIDDILDISKIEANHMKIESVPFSLGQTVFKALKILAVEASERSLHLTYHINNSVR 730

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G  + L           D     FSV + G  I
Sbjct: 731 DCVIGDAFRLRQIILNLIGNAIKFTETG-QIQLTIKEAVPRCHPDKYLLEFSVSDTGIGI 789

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +     +F++F        R   G GLGLSI +  +NL GG + ++S+    +T +  
Sbjct: 790 DKSKLDLIFDKFQQADGSMTRKFGGTGLGLSISKKLVNLMGGDIWVTSAVGVGSTFHFT 848


>gi|83311645|ref|YP_421909.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946486|dbj|BAE51350.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 847

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/442 (21%), Positives = 178/442 (40%), Gaps = 23/442 (5%)

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF--ENLTVQVDLE 426
            ++      +    ++  +  D   +  G+   V  T   R     +   E+ T +   E
Sbjct: 396 RDFAAVAGGLGPFLQARTSGSDLVRIAQGEGERVFETMLARSVDTGLILVEDATSRRQAE 455

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS------PGTHI 480
                 + +  +        V      G +  +N A   L +     L         THI
Sbjct: 456 E----AIAIFAQFPSQDPNPVLRVTRAGVVTHANQAASRLLEFWGIDLGGMLPEAWKTHI 511

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            +      +   E    D   +++         +      ++  +    ++ + N     
Sbjct: 512 VDALEGGVQSEAEITVRDRILSLVFVPLPGVGVVNVYGSDITGRIAAERLLHMVNESLER 571

Query: 541 TFVNVTD--------SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                T+         +RAER L    E    A+  K  F+ +VS+ELR+PL  +IGF++
Sbjct: 572 RVHQRTEALKAEIAEHIRAERELVAAKEQADLANRAKTEFLANVSHELRTPLNAVIGFSE 631

Query: 593 LLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++     G L +++   YV  I AS   LL ++NDILD+A ++AG M+ +   +   +++
Sbjct: 632 VMAAEMFGPLGSARYVGYVNDILASGRHLLAVINDILDIAKIEAGQMEFDMELVQPAEVV 691

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
               + + ++     + +       + +  ADR+RLLQI   +LSN++ F+ +G +V + 
Sbjct: 692 AAAIRIVESRADAGGLVLGSHIAEDVPALKADRRRLLQILVNLLSNSVKFTPEGGSVEVT 751

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                    F+V + G  + +D        F        RR  G GLGL +V +F+ LHG
Sbjct: 752 VEVLGDMVGFTVSDTGIGMSDDEVVVAMLPFRQVDGSLSRRYDGTGLGLPLVRAFVELHG 811

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           GH+ I S     T +  R+P +
Sbjct: 812 GHLDIVSRKGEGTQVTVRLPQE 833



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 84/285 (29%), Gaps = 38/285 (13%)

Query: 177 ELAETTLKCKKLSNHISVFKVLF-DSLDFLVWHRDQAGDILWANISYK---KNTETEGIV 232
           ELA   ++ + L + +   +    D  +  +    +   +   N         TE  G+ 
Sbjct: 320 ELAHLEIEVETLVSEVQRSRQALKDEEEARIHLLTEQAALAAENERLHLLHSVTEVMGVG 379

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNN-KSYKIVRVLNSF 286
             +      +     ++     +  L        S      +  G   + ++ +   +  
Sbjct: 380 VIRMTDGGPQAENSVMRDFAAVAGGLGPFLQARTSGSDLVRIAQGEGERVFETMLARSVD 439

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL---WEIDL 343
               +  D +      + +    +        +    +   +   N++   L   W IDL
Sbjct: 440 TGLILVEDATSRRQAEEAIAIFAQFPSQDPNPVLRVTRAGVVTHANQAASRLLEFWGIDL 499

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                                LPE      WK +I    +     +    + + + L ++
Sbjct: 500 G------------------GMLPE-----AWKTHIVDALEGGVQSEAEITVRD-RILSLV 535

Query: 404 VTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
               P  G + ++  ++T ++  E   + + +     +   +E +
Sbjct: 536 FVPLPGVGVVNVYGSDITGRIAAERLLHMVNESLERRVHQRTEAL 580


>gi|330878817|gb|EGH12966.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 383

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 5/332 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A R   + +E           +          ++  +  + I+       ++ Q  LE 
Sbjct: 30  EAARYRQRLQEVLAETQQLNEELQVQQEELRTANEELEEQSRILKESQAHLETQQAELEQ 89

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            ++ + + S       Q      N  +   A+  L  + + L++A + K+ F+ ++S+EL
Sbjct: 90  TNEQLADQSQA--LADQRDALDRNNEELSIAQAELQARADELQRASKYKSEFLANMSHEL 147

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL + +    LL  +   +L ++Q ++ E I ++   LLNL+NDILD++ V+AG +++
Sbjct: 148 RTPLNSSLILAKLLAENPGENLTAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEM 207

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
                 ++ L+  ++        E  +   V    G       DRQRL QI   +LSNA+
Sbjct: 208 RPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAI 267

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            F+  G+  ++ + +     +F V+++G  I E+  + +F  F        RR  G GLG
Sbjct: 268 KFTEAGAVSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIFEAFRQADGTTNRRYGGTGLG 327

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           LSI      L GG +S++S+    +  +  +P
Sbjct: 328 LSISRDLAALLGGSISVTSAPGQGSIFSLVLP 359


>gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
 gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
          Length = 1370

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 16/304 (5%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              A + +  +E +  Q  L+  +  + E +   L   Q         +  +A + L  + 
Sbjct: 742  LTAELQARSEELQVQQDELQRSNAELEEKAT--LLAEQNRDIETKNLEIEQARQELETRA 799

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + L  A   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y   I ++ + 
Sbjct: 800  QELSLASRYKSEFLANMSHELRTPLNSLLILAQLLAQNPSHNLTPKQVEYAGIIHSAGSD 859

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
            LL L+NDILDL+ V+AG M ++   + L  LL+ V+ +      + ++   V  + G   
Sbjct: 860  LLQLINDILDLSKVEAGKMDISPERVPLRRLLDYVEATFRPMTSQKSLEFAVSTAPGVPV 919

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGST-----------VILKAARDNGDFIFSVKNNG 727
              + D  RL Q+   +LSNA+ F+ +G             V +   R+     F VK+ G
Sbjct: 920  DLLTDDSRLRQVLRNLLSNAVKFTERGRVELLIEPAQAHDVPVSVHREGAVVAFHVKDTG 979

Query: 728  SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              I     +++F  F         +  G GLGLSI     +L GG V++ S+    +T  
Sbjct: 980  IGIAAHQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVESTPGQGSTFT 1039

Query: 786  CRIP 789
              +P
Sbjct: 1040 LYLP 1043


>gi|299771551|ref|YP_003733577.1| Sensor protein gacS [Acinetobacter sp. DR1]
 gi|298701639|gb|ADI92204.1| Sensor protein gacS [Acinetobacter sp. DR1]
          Length = 935

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 141/326 (43%), Gaps = 18/326 (5%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                +  I     R   ++    L           ++ +   ++ L  S LE       
Sbjct: 198 RWIAPMYEIRMQLQRLNADTLDQHLVINSTGELRLLQRDIANVVKRLHFSFLELKEHTEQ 257

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + +   ++  +         +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL
Sbjct: 258 TEEDLRRTLDTLEVQNI--TYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLL 315

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +  +LN++Q+ Y++ I  SS  LL L+ND+LD + +DAG ++L  +   L + + +V
Sbjct: 316 LRQQ--NLNNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDV 373

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++    + +I +       +    + D  R  QI + ++SNA+ F+  G  +I++  
Sbjct: 374 MDMLSPLAAQKHIAMAFYYADNIPQEVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVR 432

Query: 714 RDNGDF-----IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
            ++ D       FSV+++G  +     K +F  F         Q  G GLGL+I +  ++
Sbjct: 433 MEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVH 492

Query: 767 LHGGHVSISSSD-----EGVTTINCR 787
           L  G +    +      E  +T    
Sbjct: 493 LMHGQIGFEDNQERAPTEKGSTFWFT 518


>gi|261212489|ref|ZP_05926774.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC341]
 gi|260838420|gb|EEX65076.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC341]
          Length = 856

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 160/382 (41%), Gaps = 32/382 (8%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +               
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQ--------------- 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
           I+ +      ++           +IT     +   + T E+    V  +++ P+    Q 
Sbjct: 388 IQFLREDAQNHFLFEILEKQLLPMITYVAQGKNPSEVTTEV-DGRVYRWNLSPIMVEGQI 446

Query: 539 MLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK
Sbjct: 447 ISVITQGQDVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLK 506

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   SL  +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + 
Sbjct: 507 RT---SLTDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFPLQELVCAID 563

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
           +      ++  +++ V S+    + V +D+ R+ QI   +L+NA+ F+ +GS  V L+  
Sbjct: 564 RIYRPLCNDKGLQLIVNSNITRSTMVRSDQIRINQILFNLLNNAIKFTHQGSVRVELELM 623

Query: 714 RDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
             +     +  V + G  I E     +F  F+       R   G GLGL+IV S + +  
Sbjct: 624 VGDPLAQLVIQVIDTGIGIREQDLAVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLS 683

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + +SS     T    ++P +
Sbjct: 684 GQLHVSSEYGVGTRFEIQLPIE 705


>gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 10/261 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N+  M     + +  R    L +  EA       K++F+ + S+E+R+P+  IIG  +LL
Sbjct: 341 NSDRMKLAGRLDEQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLL 400

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L+ KQ ++V  +  S+  L+ ++NDILD + +DAG   L      L  +LN  
Sbjct: 401 LGTR---LSDKQLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMT 457

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
            + +     +  + + ++    +  F+  D  RL Q+ + ++ NA+ F+ +G   V +  
Sbjct: 458 LRPLTIACQQKGVELILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDF 517

Query: 713 ARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
             ++       FSVK+ G  +     + +F  F        RR  G GLGL+I    I L
Sbjct: 518 LSESDGVAYIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIEL 577

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG +S+ S+    +     I
Sbjct: 578 MGGQLSVESNLGKGSEFFFEI 598


>gi|223043560|ref|ZP_03613605.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           capitis SK14]
 gi|222443048|gb|EEE49148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           capitis SK14]
          Length = 565

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 174/406 (42%), Gaps = 38/406 (9%)

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAV 449
           L +G   HV V  +    T  +F           K N   K+Q      T++++   V +
Sbjct: 184 LADG-YYHVRVPESNVKETRALFVTTNELARRLQKLNNSQKIQSNRLKTTLENIPSSVLM 242

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
               G I ++N A+  ++ + + ++    +I  I  +  +             II SF  
Sbjct: 243 IDKHGEIVVANHAYYEVF-SPDQQVENKNYIGFIDDSIEKL------------IIESFRT 289

Query: 510 ERK---SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           E+     ++  +  +     + S +P+ +         V         +      L+K +
Sbjct: 290 EKVIYDQIEVDINNVHTKYFDVSCVPILSKSKKKLQGMVV--------VLHDITNLQKLE 341

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624
            ++  FV +VS+EL++P+T+I GF + L     G+ N +QS   ++  I   S  + +LV
Sbjct: 342 NLRREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNRIESLV 398

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            D+LDL+ ++    ++  + + L++L      ++ T+    NI I+   +  +    A  
Sbjct: 399 MDLLDLSHIEQ-QTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVI-IEAHE 456

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            ++ Q+ + +LSNA+++S + + VI++  R+       +++ G  I     K +F RF  
Sbjct: 457 NKIAQVITNLLSNAINYSLEDNKVIVRVFREGKKVNLEIQDFGIGISAKDQKHIFERFYR 516

Query: 745 NA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                     G GLGLSI +  +  H G ++I+S     +T     
Sbjct: 517 VDKARSRDSGGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVTF 562


>gi|152975001|ref|YP_001374518.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152023753|gb|ABS21523.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 591

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 159/371 (42%), Gaps = 41/371 (11%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L       ++  + 
Sbjct: 249 ALQQEKEQLSSILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEENDLELSR 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +      + +   A       ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 NLPPELVEQFHFVAE-----SEQQQVIEMNLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRKDFIANVSHELRTPMVMLQGYSEAILDDVV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+ S + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGRLVNELLDLARMESGHVELHMSEVEIHPFVEKIGRKFQGIAQDKGV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++ V    ++     D  RL Q+ + ++ NA+  +S    V L   + +   +F V++ G
Sbjct: 463 KLTVDFRTEVTEHTFDPDRLEQVLTNLIDNAIRHTSADGHVKLVIDKKDAGIVFEVQDTG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHR---------GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF               G         +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKTGGTGLGL------AIAKNIVQSHDGKISVSSVV 576

Query: 779 EGVTTINCRIP 789
              TT    +P
Sbjct: 577 GEGTTFFVYLP 587


>gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
 gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
          Length = 643

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 157/406 (38%), Gaps = 10/406 (2%)

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           PN   + V   +          E++  + +   +           +  + + V     +G
Sbjct: 170 PNAVVMPVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANG 229

Query: 455 RIKLSNPAFRSLWKTEENRLSPG-----THIRNIAATCSRYYN-ESDGWDLFAAIITSFD 508
           R+  ++ +       E +RL         HI +  A      +  + G           D
Sbjct: 230 RVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGMPATVPFRLHLD 289

Query: 509 DERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             R     T+   +    +E  +     +  +    +V++  R  + L        +ADE
Sbjct: 290 APRADGSRTIYAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADE 349

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVND 626
           +K  F+  VS+ELR+PL  IIGF+D+L      SL+ ++  +Y   I+ S   LL++VN 
Sbjct: 350 VKTHFLATVSHELRTPLNAIIGFSDVLSGEGAVSLSPERSREYAGIIAQSGRHLLDVVNT 409

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ +  G        + +  L+      +  K   + I +         + VAD + 
Sbjct: 410 LLDISRIRGGHFDFQPEPVDVEALIRSCCDLMRLKADASGIALVSAPVPAGCALVADARA 469

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
             Q+   ++SNA+ F+ +G  V +   R        V +NG  I E     + + F    
Sbjct: 470 CRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDVVVSDNGIGITEADLPRLGDPFFQAG 529

Query: 747 H--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                   G GLGLS+V     LHGG VS+ S+    T +   +P 
Sbjct: 530 GGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575


>gi|313884490|ref|ZP_07818251.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620274|gb|EFR31702.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 575

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 150/375 (40%), Gaps = 25/375 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T             +     ++HL+ GV +     RI+L+NP    L       +  G 
Sbjct: 219 VTQLRHQYRNLEDSERRLSILLNHLNLGVLLIDDRDRIELNNPESLKLLDLSAPIV--GL 276

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLPNA 536
               I  +                +I +   + ++ Q  +E       V++ +IIP    
Sbjct: 277 PFETIIRSVR-----------LVELIRAVQKDEQAKQEEIEFYYPDYRVIDVNIIPYQRE 325

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++     +          L       RK + I+  FV + S+ELR+P+T I GF + L  
Sbjct: 326 RSGHIAHSSL-------VLLYDVTRNRKLETIRTEFVANASHELRTPVTAIKGFAETLLD 378

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L   +    Q+VE I+  S  L  +++DIL+L+ V+          + L      V Q
Sbjct: 379 GALSDPD-MTKQFVEIIAKESNRLEVIIHDILELSRVEKNSEPWETQLLDLVATGKAVLQ 437

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                  + NIR+   S+       +++ RL QI   ++ NA+++S  G  ++L   +  
Sbjct: 438 LFKQASQQKNIRMNFSSNIDQLMIDSNKHRLEQIMINLIDNAINYSDFGGEILLAVEKVK 497

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              +  V + G  IPE     +F RF            G GLGLSIV + + +  G++ +
Sbjct: 498 QGALIQVSDKGIGIPEADQSRIFERFYRVDKDRSRNSGGTGLGLSIVNNLVRIMEGNIQV 557

Query: 775 SSSDEGVTTINCRIP 789
           +S +   TT    IP
Sbjct: 558 TSVEGQGTTFKIFIP 572



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 60/174 (34%), Gaps = 12/174 (6%)

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI-AIDV-----SKEITVNDQLTHTYEILH 313
           +   + +  +   + + YK+     S  +    A D+      +   + D       +L+
Sbjct: 182 REMSQQLRHIVDSDYRYYKVTANFTSLADLNDSAEDLVTQLRHQYRNLEDSERRLSILLN 241

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + + D    ++ +N   ++L ++    +      + ++  +R    +      + 
Sbjct: 242 HLNLGVLLIDDRDRIELNNPESLKLLDLSAPIVGL--PFETIIRSVRLVELIRAVQKDEQ 299

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
            K+     Y       D   +P         + +    ++ +  ++T    LET
Sbjct: 300 AKQEEIEFYYPDYRVIDVNIIP----YQRERSGHIAHSSLVLLYDVTRNRKLET 349


>gi|300864140|ref|ZP_07109035.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337868|emb|CBN54181.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1037

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 18/258 (6%)

Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER   L E  E    A+  K+ F+ ++S+ELR+PL  I+G+  +L+ SK  SL     +
Sbjct: 547 AERTVELKEAKEIADSANRAKSEFLANMSHELRTPLNGILGYAQILQRSK--SLVELDQK 604

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I+   T LL L+NDILD + ++A  M++  +       L  V +    K  +  I 
Sbjct: 605 GIGIINQCGTHLLTLINDILDFSKIEARKMEIYAADFYFPSFLEAVIEICRIKAEQKGID 664

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDF---- 719
               ++G +      D +RL Q+   +L NA+ F+ +GS   L    K   ++ +     
Sbjct: 665 FIDQTEGVIPLGIHTDEKRLRQVLINLLGNAIKFTEQGSVKFLINSRKVESEDREVNLYR 724

Query: 720 -IFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F V++ G  I +D  K++F  F  + + + Q  G GLGL+I ++ +++ G  + + S 
Sbjct: 725 IRFQVEDTGVGISKDHIKNIFLPFEQSGNMKKQSEGTGLGLAISKNIVDMMGSTLEVESE 784

Query: 778 DEGVTTINCR--IP-SKE 792
               +       +P +KE
Sbjct: 785 LGKGSVFCFEIDLPEAKE 802


>gi|294508548|ref|YP_003572607.1| Signal transduction histidine kinase [Salinibacter ruber M8]
 gi|294344877|emb|CBH25655.1| Signal transduction histidine kinase [Salinibacter ruber M8]
          Length = 766

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 183/466 (39%), Gaps = 19/466 (4%)

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
           ++      T P   E +     A +   +           ++   +++        + + 
Sbjct: 284 DLGRPLTETLPGLGETIRRGEPAWRAGFEKGEAQECREDRAMTAPTQSDASVRPAEHYRY 343

Query: 400 LHVIVTSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
             VI TS  +G      +  ++T Q   E +     +     ++  +    V  PDG  +
Sbjct: 344 FRVIQTSLGQGMDTQTVVLSDITEQKHRERELRESERRFQAMLNDPNILAGVLAPDGTFQ 403

Query: 458 LSNP---------AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
             N              L +         T  R+          E +     A  +T  D
Sbjct: 404 KVNDTALGYIEATRADVLGRPFWETPWWDTENRSAVREKVERVAEGEYVRFEAEHVTP-D 462

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            E +++ G +  ++    E   I +                 A+           +A  +
Sbjct: 463 GEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRKARRLKEAKEQAELSKLEAEEASRM 522

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++ + ++S+E+R+PLT IIGF + +     G  +   + + + I  S   LL+ ++ +L
Sbjct: 523 KSAMLANMSHEIRTPLTGIIGFAEAIGDEIDG--DGGVAHFADLIEDSGRRLLDTLDAVL 580

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +L+ ++AG M L    I L D   +V +  A +  ++ + ++V ++       AD   L 
Sbjct: 581 NLSKLEAGQMTLESRPIDLADQAQQVAREFAAEADDSGLALEVEAEEAGAR--ADEGGLQ 638

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH- 747
            +   +LSNA+ ++ +G TV ++  R++G+ +  +++ G  +   + +S+F  F   +  
Sbjct: 639 IVLQNLLSNAIKYTEEG-TVQVRTYREDGEAVLQIEDTGIGMDPAVAESLFEPFRQGSEG 697

Query: 748 -RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +  G G+GL++ +      GG + + +     +T   R+P+ +
Sbjct: 698 LSREYEGTGIGLAVTKKATEQMGGSIDVETEKGEGSTFTARLPAAD 743


>gi|222054940|ref|YP_002537302.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221564229|gb|ACM20201.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 1215

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/501 (19%), Positives = 190/501 (37%), Gaps = 50/501 (9%)

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHL 394
             +  ++ A    + +  ++   LR   ++ + L+W KT +  + ++ +  +   +    
Sbjct: 275 RAVCNLEEAQTTLDSAFRQMTSSLRHNRQVEQDLDWLKTGQNELNALLRGEQAMNEMAE- 333

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQ-VDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
              + L  +      G   + F +   Q + +   Y    +       ++ EGVA     
Sbjct: 334 ---KVLAYLARYLDCGVGTFYFHDTQEQNLRIIATYAFTRRKNLNDRLNMGEGVAGQAAR 390

Query: 454 GR--IKLSNPAFRSL-----------WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            R  I LSN     L                  L     +  +    + +        L 
Sbjct: 391 ERKMICLSNVPDDYLAIASSLGEAAPRNVVVLPLVHDNTLLGVVELGAFHGFNERELQLL 450

Query: 501 AAIIT------SFDDERKSLQGTLELLSDSVLEYSI---------------IPLPNAQTM 539
            +++       S +  R+ +   LE       E  +                 +   Q  
Sbjct: 451 DSVMEGLAVGISVNISRQRVNELLEQTQQQTEELRVQQEELQQSNEELEERAQMLEQQRE 510

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                  +   A R L  K + L +    K+ F+ ++S+ELR+PL +++  + LL  +K 
Sbjct: 511 QIRNKNKEVEEASRELQRKADELERISAYKSEFLANMSHELRTPLNSLMILSHLLMDNKE 570

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G+L+ KQ  +   ++ +   LLNL+NDILDL+ V+AG ++ ++  + + DLL  ++    
Sbjct: 571 GNLSEKQVGFARTMNDAGNDLLNLINDILDLSKVEAGRLEFHFEELKVIDLLEPLETMFR 630

Query: 660 TKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               +  +  ++ +  G       D QR  QI   +LSNA  F+  G   +L      G+
Sbjct: 631 PLAEQKGLAFQIKTGAGVPECISTDMQRTQQILKNLLSNAFKFTHNGGVEVLAGIPAPGE 690

Query: 719 -------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                     +++++G  I  +  + VFN F        R   G GLGLSI         
Sbjct: 691 NILPVPALAIAIRDSGIGISAEKQEIVFNAFQQGDGSTSRKFGGTGLGLSISRQLARGMQ 750

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G ++++S +   +     +P 
Sbjct: 751 GDITLASREGEGSVFTVYLPL 771


>gi|325092630|gb|EGC45940.1| DRK1 histidine kinase [Ajellomyces capsulatus H88]
          Length = 1288

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 698 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 755

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 756 SLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSLAYQVDSSVP 815

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSI 730
            +V  D  RL QI   ++ NA+ F+  G   +  +  D  +       F FSV + G  I
Sbjct: 816 DYVTGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSDREECKDNEYAFEFSVSDTGIGI 875

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     ++ +  
Sbjct: 876 EEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFT 934


>gi|260223358|emb|CBA33843.1| hypothetical protein Csp_B21070 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 538

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 10/244 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L E +     A+  K+ F+ ++S+ELR+P   ++G   LL+++    L + Q+ Y++ 
Sbjct: 116 HELREAHFRAEAANRGKSQFLANMSHELRTPFNGMLGMMSLLEST---PLTTAQTDYIKT 172

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LL L+NDILD++ +++G M LN   + L  LLNEV   +     E  ++  ++
Sbjct: 173 AKGSANHLLTLLNDILDVSALESGKMTLNPEPVQLPALLNEVNALMHPLAVEKQLKFSIV 232

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGD--FIFSVKNNG 727
              +L ++V AD  RL QI   +++NA+ F+  G     I+   R +G+    F V++ G
Sbjct: 233 VQAELPAWVLADATRLKQILFNLVNNALKFTDHGGVTLTIVSRPRTDGNTGLAFLVEDTG 292

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + + +   +F RF         +  G GLGL I ++   + GG + + S+    +   
Sbjct: 293 IGMDDHVLSRLFQRFYQVDGGLARKFGGTGLGLEISQTLARMMGGAIEVESTLGKGSVFT 352

Query: 786 CRIP 789
             +P
Sbjct: 353 LHLP 356


>gi|88706907|ref|ZP_01104606.1| two-component system sensory histidine kinase [Congregibacter
           litoralis KT71]
 gi|88698829|gb|EAQ95949.1| two-component system sensory histidine kinase [Congregibacter
           litoralis KT71]
          Length = 508

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 130/300 (43%), Gaps = 13/300 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTE 557
           ++   +D  K L+   + L    L+Y I  + +   +               RA     +
Sbjct: 201 LVRYTNDNLKRLKRGTQRLGAGELDYRIDDIDDDGELGDLAIAFNTMSDKLRRAIDEEID 260

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY---VEYIS 614
             ++  +A+  K+ F+ +VS+ELR+PL  IIG++++L           + QY   ++ I 
Sbjct: 261 AKQSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLHDELDDEAPVDREQYQSDLDKIV 320

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL L++DILDL+ ++ G M L        + L     ++A  +  N   ++    
Sbjct: 321 LSGRQLLALIDDILDLSKIETGKMTLVREAFHPGEALTMAVDALAPLLRRNGNVLECDDF 380

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPE 732
             L     D  +  Q+   +LSNA  F+ +G  + + A+ +  +     +V + G  + E
Sbjct: 381 SDLPQIHNDAVKFRQVIVNLLSNAAKFTEQG-VIRVSASFEASSAQLSIAVSDTGIGMTE 439

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    VF+ FV           G GLGL+I   F  L GG +++ SS    +     +P+
Sbjct: 440 EQQALVFDAFVQAEDTTSNTYGGTGLGLAICRDFCELMGGTIAVQSSPGEGSVFTVSLPA 499


>gi|116750047|ref|YP_846734.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699111|gb|ABK18299.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 610

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 151/371 (40%), Gaps = 26/371 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +     +     +     +D LS+ VAV  P G ++L+N   R ++              
Sbjct: 252 RRTDRARLLRTQRATQSALDTLSDAVAVCSPAGEVELANDTARRVFNLSPESTIESAGNE 311

Query: 482 NIAATCSRYYNESDG--WDLFAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            I    +R   E        + + I  F +  ER  L G + +L +      I  +    
Sbjct: 312 KIGELFARVRREMRAVRHQGYDSAIQVFREGEERFYLPGGIPILDEDHQLAGITLVLTDV 371

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T                       +R+ DE+K+  +  VS+EL++PLT++     +L + 
Sbjct: 372 T----------------------GVRRLDEVKSGLISTVSHELKTPLTSVRLAAHVLLSE 409

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           KLG LN KQ + +      S  L  ++ ++LD++ ++    K+  S +    ++ +    
Sbjct: 410 KLGPLNPKQVEILVAAREDSDRLYQIIENLLDISRIETDRSKIRLSPVDTEQMVLQATDE 469

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           + +   +  + + +     +   +A+   L  +F+ +LSNA+  +  G  V + A R   
Sbjct: 470 MRSAYMDRKVTLVLDLPEDVPPVLAEAFYLESVFANLLSNALRHTPAGGRVTVSARRKGD 529

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              FSV++ GS IP +    VF +F     R +RR  GLGL+I    +  HGG + + S 
Sbjct: 530 AVQFSVEDTGSGIPAESLPHVFEKFYRGPGREERRDSGLGLAIAREIVEAHGGTIGVVSE 589

Query: 778 DEGVTTINCRI 788
                     +
Sbjct: 590 PGKGARFTFTL 600



 Score = 43.0 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +    +      T   L  L+ A+A+      ++  N +   ++ +       +  N+++
Sbjct: 254 TDRARLLRTQRATQSALDTLSDAVAVCSPAGEVELANDTARRVFNLSPESTIESAGNEKI 313

Query: 356 LE-FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            E F R   ++  +       ++   V++  E   + ++LP G  + ++   +   G   
Sbjct: 314 GELFARVRREM--RAVRHQGYDSAIQVFREGE---ERFYLPGG--IPILDEDHQLAGITL 366

Query: 415 MFENLTVQVDLET 427
           +  ++T    L+ 
Sbjct: 367 VLTDVTGVRRLDE 379


>gi|316941685|gb|ADU75719.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 387

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 126/249 (50%), Gaps = 4/249 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     R LT   E   K+   K+ F  ++S+EL++PL+ I+G   L+        N ++
Sbjct: 104 EKNELIRNLTSLYEKTIKSSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLDGNDRR 163

Query: 607 S--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              +++  I  +   LL L+N+ILD++ +D+G +K N     +  L+ ++  S+   + +
Sbjct: 164 KSTRHLITIKQNCYRLLRLINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVIPYVEQ 223

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + ++  +  +      D  ++ +I   +LSNA+ F++ G  + +K A+     I  VK
Sbjct: 224 KGLTLEFDTLEEEIITAVDVDKIERIILNLLSNAVKFTNPGGKITVKVAKKFNKVIIKVK 283

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP++M  ++F R+    +    +  G G+GLSIV+SF+ LH G + + S +   +
Sbjct: 284 DTGIGIPKNMQAAIFERYRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSKENKGS 343

Query: 783 TINCRIPSK 791
                +P +
Sbjct: 344 EFIISLPIQ 352


>gi|313683119|ref|YP_004060857.1| hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155979|gb|ADR34657.1| Hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 758

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 15/311 (4%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLT 541
           IA       N+    D    + T F  +R  L  T  L ++D  +  S+  L +      
Sbjct: 75  IAELIDYLKNKELRADELFLLCTRF--KRSVLDATYRLGVNDQSVFASVSYLFDQNFSGV 132

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
               TD+      + +K +    A + K  F+ ++S+E+R+PL  I+GF  LL+     +
Sbjct: 133 LKLYTDT------IYQKEQEAINASKAKEYFLSNMSHEIRTPLNAILGFVSLLRDE---T 183

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N +  QY++ IS S   LL+++NDILD + + +G   ++     ++D ++   +     
Sbjct: 184 TNPRYQQYLDIISNSGENLLHIINDILDFSKLRSGEFMIDPQPFNIHDEISHTMELFVPG 243

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +  NI +    D  +    VAD  R+ QI    LSNA+ FS     + ++A  D G   
Sbjct: 244 ANSKNITLTSFIDPTIAYEIVADALRIKQIVGNFLSNAIKFSHHAGAIHVEARCDEGILS 303

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
            SV++ G  I     + +F+ F        +   G GLGLSI +   +  GG + + S+ 
Sbjct: 304 LSVRDQGIGIVLADQERIFDAFSQAQEGSMKVNGGSGLGLSICKQLAHHMGGVIELESTV 363

Query: 779 EGVTTINCRIP 789
              +    +IP
Sbjct: 364 GKGSLFTLKIP 374


>gi|258404324|ref|YP_003197066.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257796551|gb|ACV67488.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 810

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 137/297 (46%), Gaps = 29/297 (9%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           D    +  SF+  RK+LQ  +  L   V + +                        AL++
Sbjct: 386 DEIGDLAASFERMRKALQSQIATLDKQVRDRTA-----------------------ALSK 422

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             E   +A+  K+ F+  +S+E+R+P+  ++G +DLL+ ++   L+++Q +Y+    +S 
Sbjct: 423 AKEEAERANRAKSDFLSGLSHEIRTPMNALLGASDLLEKTE---LDARQRKYLRMGKSSG 479

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGK 676
             LL+L+ ++LD+A ++ G ++L      L  ++ E    +     E  + + K I+   
Sbjct: 480 KTLLSLITNLLDVARLERGRLQLAREVFSLEQMVQEAIDVVELAAQEKGLILNKKIALAV 539

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
            G+++ D  RL QI   +L+NAM F+ +G  ++     +    +F V + G  IP++  +
Sbjct: 540 RGTYLGDPVRLRQILVNLLNNAMKFTPQGRVLVEVTPAEQTGVLFRVSDTGEGIPQESLE 599

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++F  F            G GLGL+I    +   GG + + S     +     +P +
Sbjct: 600 TIFEPFSQLDSSSGLPNSGSGLGLAISRQLLEAMGGRIWVESRLGRGSDFFFLVPLE 656


>gi|256004073|ref|ZP_05429058.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281419091|ref|ZP_06250108.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|255991996|gb|EEU02093.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281407240|gb|EFB37501.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 430

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 126/249 (50%), Gaps = 4/249 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     R LT   E   K+   K+ F  ++S+EL++PL+ I+G   L+        N ++
Sbjct: 147 EKNELIRNLTSLYEKTIKSSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLDGNDRR 206

Query: 607 S--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              +++  I  +   LL L+N+ILD++ +D+G +K N     +  L+ ++  S+   + +
Sbjct: 207 KSTRHLITIKQNCYRLLRLINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVIPYVEQ 266

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + ++  +  +      D  ++ +I   +LSNA+ F++ G  + +K A+     I  VK
Sbjct: 267 KGLTLEFDTLEEEIITAVDVDKIERIILNLLSNAVKFTNPGGKITVKVAKKFNKVIIKVK 326

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP++M  ++F R+    +    +  G G+GLSIV+SF+ LH G + + S +   +
Sbjct: 327 DTGIGIPKNMQAAIFERYRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSKENKGS 386

Query: 783 TINCRIPSK 791
                +P +
Sbjct: 387 EFIISLPIQ 395


>gi|39726359|gb|AAR30122.1| putative histidine kinase HHK1p [Gibberella moniliformis]
          Length = 2362

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 18/252 (7%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +   +A + K+ F+ +VS+ELR+PL  +IG ++LL+ S    LN  Q +  
Sbjct: 1922 AEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS---DLNKDQLEMA 1978

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI----ATKMHENN 666
            + I  S+ +LL ++NDILD + ++A  MKL        D++ EV +++      K  + N
Sbjct: 1979 DSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKTSKKN 2038

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIF 721
            ++I    +        D  RL Q+   ++ N++ F+  GS + + A      +++    F
Sbjct: 2039 VKIVQNINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGS-ITIGARLDKETKEHATLTF 2097

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSD 778
             V++ G  IP      +F  F         +  G GLGLSI +S I  +  G + + S +
Sbjct: 2098 WVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEE 2157

Query: 779  EGVTT--INCRI 788
               TT       
Sbjct: 2158 NVGTTAWFTVTF 2169


>gi|125974566|ref|YP_001038476.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|125714791|gb|ABN53283.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
          Length = 387

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 126/249 (50%), Gaps = 4/249 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     R LT   E   K+   K+ F  ++S+EL++PL+ I+G   L+        N ++
Sbjct: 104 EKNELIRNLTSLYEKTIKSSSQKSEFFYNMSHELKTPLSVILGAIQLISQKYPLDGNDRR 163

Query: 607 S--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              +++  I  +   LL L+N+ILD++ +D+G +K N     +  L+ ++  S+   + +
Sbjct: 164 KSTRHLITIKQNCYRLLRLINNILDISRIDSGYIKTNMVNCNIVYLVEDITSSVIPYVEQ 223

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + ++  +  +      D  ++ +I   +LSNA+ F++ G  + +K A+     I  VK
Sbjct: 224 KGLTLEFDTLEEEIITAVDVDKIERIILNLLSNAVKFTNPGGKITVKVAKKFNKVIIKVK 283

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP++M  ++F R+    +    +  G G+GLSIV+SF+ LH G + + S +   +
Sbjct: 284 DTGIGIPKNMQAAIFERYRQVKNGLTAEIEGSGIGLSIVKSFVALHNGVIKVRSKENKGS 343

Query: 783 TINCRIPSK 791
                +P +
Sbjct: 344 EFIISLPIQ 352


>gi|182415595|ref|YP_001820661.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
 gi|177842809|gb|ACB77061.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
          Length = 606

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 126/278 (45%), Gaps = 10/278 (3%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L  ++ ++   + + L +      +  + ++      L++  E    A+  K+ F+  +S
Sbjct: 183 LITITYALFLINTMRLHHGDLRRLWQLIFENEELVGTLSQAKERADAANRAKSDFLATMS 242

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+P+  I+G   +L  S   SL  +Q   VE    S+  L+ L+NDILD + +++G 
Sbjct: 243 HEIRTPMNGIMGMLQVLHGS---SLTVEQRAQVEIAGNSAESLMRLLNDILDFSKIESGK 299

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILS 696
           ++    +  L   L++V   +  +  E  + +++     L    + D  RL Q+   +  
Sbjct: 300 LEFESVSFDLKAALHDVVSLLRPRAAEKGLALELHLPDNLPDHVIGDSVRLKQVLLNLTG 359

Query: 697 NAMDFSSKGST-VILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           NA+ F+ +G   + ++ ++ +       FSV++ G  + +   + +F  F        RR
Sbjct: 360 NAIKFTEQGEVALRVRVSQRDTTSARVGFSVRDTGIGMDDATRQKLFQLFSQGDSSMNRR 419

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +      GG + + SS       +  +
Sbjct: 420 FGGTGLGLAISQRLAEHMGGKIEVRSSPGQGAEFSFEL 457


>gi|153832488|ref|ZP_01985155.1| sensor histidine kinase [Vibrio harveyi HY01]
 gi|148871283|gb|EDL70155.1| sensor histidine kinase [Vibrio harveyi HY01]
          Length = 806

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 160/396 (40%), Gaps = 41/396 (10%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL-SNPAFRSLWKTEENRLSPGT 478
           TV + LE     L +   E  +  S GV +   DG++ +  N  F        ++L  G 
Sbjct: 194 TVDLSLE----ALFQFIREHTNQYSLGVVIRDADGQVVIEHN--FHLTKDIYISQLEFGA 247

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSF--------------------DDERKSLQGTL 518
               +    ++       +D   ++                        +   +  Q   
Sbjct: 248 FQWQMDVVNAKVQVAEQVFDQVMSVERGIIPFLLICVLVGYYLLNRYIVEPIVRIAQKVD 307

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +  +  +++ +         ++T  N          L ++    + +   K +F+  +S+
Sbjct: 308 DSKTGGIIDITYDSEDEIGHLITKFNEKTVY-----LEQERIKAQASTNAKTAFLATLSH 362

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  ++G   +L  ++   L  +Q +++  +  S   ++ L+N+ILD + ++ G +
Sbjct: 363 EIRTPMNGVLGTAQILLKTQ---LTDEQRKHLNTLYDSGDHMMTLLNEILDYSKIEQGHI 419

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
           +++ +   ++ +L        T   E  ++ +VIS+   G +   D+ RL Q+   +L+N
Sbjct: 420 EIDNTPFPIDSILGSTNSVYHTLCAEKGLQFRVISNVPEGRWYNNDKARLRQVLFNLLNN 479

Query: 698 AMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           A+ F+ +G   V L    +        SVK+ G  I  D  + +F  F        RR  
Sbjct: 480 AVKFTDRGYVEVELTEYVEGQQTRLRISVKDTGIGISPDAQERIFRPFEQAESSTTRRYG 539

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+IV+      GG +++ S +   T     +
Sbjct: 540 GTGLGLAIVKQISEHMGGSITVQSQECIGTKFVVEL 575


>gi|113866854|ref|YP_725343.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113525630|emb|CAJ91975.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a PAS sensor domain [Ralstonia eutropha
           H16]
          Length = 569

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 146/352 (41%), Gaps = 14/352 (3%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D +   +     DGRI   N  + S       +   G       A  S  + E    ++ 
Sbjct: 70  DGIPHMIMTADADGRIDYCNRRWTSYTGLSLEQTRSG-------AWKSAVHPEDYARNIG 122

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSI---IPLPNAQTMLTFVNVTDSVRAERALTE 557
                        ++  L+  SD    + +    PL +A   +     + +     AL +
Sbjct: 123 HWADAVARGCEYEIEYRLKRASDGAYRWHLERGSPLKDADGKIVKWLASGTDI--EALKQ 180

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              +   A+  K+ F+  +S+ELR+PL  I+GF  L+ +       S+Q+  ++ I  + 
Sbjct: 181 AQASAESANHAKSEFLSSMSHELRNPLNAILGFAQLMASEAPPPTASQQAS-IDQILKAG 239

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+N++LDLA ++AG   L+   + + D L+E +  +  +  + ++R++  +    
Sbjct: 240 WHLLELINEVLDLARIEAGQASLSPEPVSVIDTLHECQAMLEQQALKRSVRMRFPAVEPP 299

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               ADR RL QI   +LSNA+ ++    +V ++          SV++ G  +  +    
Sbjct: 300 CFVRADRTRLKQILLNLLSNAIKYNRDQGSVDVQVTTTGHRVGVSVRDTGVGLTPERLAQ 359

Query: 738 VFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  F       G   G G+GL + +    L GG +S  S+    +     +
Sbjct: 360 LFQPFNRLGHEAGPVEGTGIGLVVAKRLAELMGGTISAKSTPGVGSVFRVEL 411



 Score = 38.0 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 58/194 (29%), Gaps = 13/194 (6%)

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL 315
              +       S ++  + +    +         G   D    +   +   H   +   +
Sbjct: 15  HDADSGRPAIASCVQTPDRRLRGQIMRRQP--HDGSGKDRPSALDFREGEPHFRLLADGI 72

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL--LEFLRSANKLPEQLNWKT 373
              I   D +  + + NR +     + L    +      +   ++ R+     + +    
Sbjct: 73  PHMIMTADADGRIDYCNRRWTSYTGLSLEQTRSGAWKSAVHPEDYARNIGHWADAVARGC 132

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI-WMF--ENLTVQVDLETKYN 430
             E  + + ++S+     WHL  G  L      +  G  + W+    ++      +    
Sbjct: 133 EYEIEYRLKRASD-GAYRWHLERGSPLK-----DADGKIVKWLASGTDIEALKQAQASAE 186

Query: 431 TLVKVQGETIDHLS 444
           +    + E +  +S
Sbjct: 187 SANHAKSEFLSSMS 200


>gi|27365916|ref|NP_761444.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362065|gb|AAO10971.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 574

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 132/270 (48%), Gaps = 12/270 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I + N + +   V +       R L    E   +A+  K+ F+  +S+ELR+PL
Sbjct: 176 LIERAVIDIENKEKLQRIVELRT-----RELALAREESERANRAKSEFLAMMSHELRTPL 230

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+LK S    +++     + ++ +S+ +LL +++DILDL+ +++G   L+   
Sbjct: 231 NSVLGMLDVLKQS---DMSAGHINLLSHMESSAGLLLAIISDILDLSKIESGEFSLSPQW 287

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           I +ND +  V            + I++  +      +  D  RL Q+   ++ NA+ F+ 
Sbjct: 288 ININDTVTFVVSQQQLVAATKGLNIELSIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQ 347

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
           +G  + ++   +N +   SV + G  I +D   S+F  F        R   G GLGL+I 
Sbjct: 348 QG-QIDIRVNLENDELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGLAIT 406

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  + L  G V +SS     +T   +IP K
Sbjct: 407 KHLVELMSGTVRVSSQFGKGSTFVVKIPVK 436


>gi|301064573|ref|ZP_07204969.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300441321|gb|EFK05690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 485

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 152/340 (44%), Gaps = 9/340 (2%)

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHI-RNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            I   N   + + K   +         + I++   + Y+ S G  +F  I+ SF +  KS
Sbjct: 148 TIDEINERLKEMVKVARSDRDEKIQTSQAISSQVLKVYSASAGLVIFLGIMISFFN-TKS 206

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +  ++ LL +   E   I      T+    +  +           +E L++ DE+K  F+
Sbjct: 207 INRSIRLLQEQTKE---IARGKFATIQPISSPPEIKELADHFNVMSERLQELDEMKIDFI 263

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            HVS+ELR+PLT I   T +L           Q + +         L++ VN ILDL+ +
Sbjct: 264 SHVSHELRTPLTVIKEATGMLLDGTYADSRESQQELLTITQQECDRLIDSVNRILDLSRM 323

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +A +M+  +    L+ L+ E    +A       IR+++     L     D  R+ Q+   
Sbjct: 324 EAKMMEYVFVPCQLSPLIQETVLKLAPIAIREEIRLQLKLQDHLPLVKMDEARIKQVLEN 383

Query: 694 ILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RG 749
           ++SNA+ FSSKG TV ++ A           SV + G+ I ++  + +F+RF      + 
Sbjct: 384 LISNALKFSSKGDTVSVRTAVQRNGQDCIQISVADTGTGIQKENLERIFDRFKRIERGKE 443

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             RG GLGLSI +  +  HGG++   S+    +T    +P
Sbjct: 444 TARGTGLGLSIAKHIVTEHGGNIWAESAPGRGSTFFFTLP 483


>gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 948

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 127/690 (18%), Positives = 247/690 (35%), Gaps = 87/690 (12%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E     ++ +     +  F+ L
Sbjct: 50  QEFNLS-SDQAQRYIQ---RTSDVMKELKYIAENRLTAENGILAIRSRNDKTEVPDFEPL 105

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAI--GESRKLFKEEIKKRM 252
           F   D       W R     + W    ++ N      + +  +   E+  +    ++   
Sbjct: 106 FPDSDCSAMSNTW-RGSLESLSWFMRYWRDNFSAAYDLNRVFLIGSENLCMADFGLRDVP 164

Query: 253 ISSSALEKNFCETV------STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
           +      K+  E +         E GNN  + I +          A+           L 
Sbjct: 165 VERDDALKSLHERILKYRNAPQDERGNN-IFWISQGPRMGVGYFYALTPVYLGNRLQALL 223

Query: 307 HTYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSN 352
              + +         +L + + I D+N          + L        +D  ++      
Sbjct: 224 GIEQTIRMENFFTPGSLPMGVTILDENG------HPLISLTGPDNRLNVDPHWMQERSWF 277

Query: 353 D--ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
                   L     LP       +   +  V +          + N   L+V+      G
Sbjct: 278 GYTSGFRELVLKKSLPPSSLSIVYSLPVDMVLERIRIL-----IMNAILLNVLA-----G 327

Query: 411 GTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAF 463
           G ++    +  +           +     +   + +     G+ +    DG   LSN   
Sbjct: 328 GALFTLARMYERKIFIPAESDAQRLEEHEQFNRKIVASAPVGICILRTQDGTNILSN--- 384

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L     N L+     R     C +  N       F  ++TS      +LQ +      
Sbjct: 385 -ELAHNYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSTH---TNLQISFVHSRY 433

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+P
Sbjct: 434 RNENVAI---------CVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTP 484

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+   
Sbjct: 485 LYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPR 541

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
                +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ F+
Sbjct: 542 EFSPREVMNHISANYLPLVVRKQLGLYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFT 601

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
             G  ++L   R        V++ G  IP      +F+ F       +   +G GLGL+I
Sbjct: 602 DIG-CIVLHVCRAGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAI 660

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
            E  +++  G +S+ +     +    RIP 
Sbjct: 661 CEKLVSMMDGDISVDTEPGMGSQFTIRIPL 690


>gi|289937550|ref|YP_003482152.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289533241|gb|ADD07590.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 639

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/501 (16%), Positives = 182/501 (36%), Gaps = 48/501 (9%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
                   E+   ++ A    ++N    + N    EL +     L  N   D        
Sbjct: 176 RKTRNELEEMHSRISDAFYSLNENGDFTYLNDRAKELIDFTDEGLVGNHVWDTF------ 229

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTIWMFENLT 420
                E       +       ++ E     ++ P        V + P   G    F ++T
Sbjct: 230 -----EWAADSKLRTEYERAMETQEPTSFEFYYPEPLDTWFEVNAYPSETGLSVYFRDIT 284

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSP--- 476
            +   E ++  +        +++ E + +  P+    +  +P+F  +W     RL     
Sbjct: 285 DRKVREAEFRMVA-------ENIGEIIWITDPETMAYQYISPSFDDIWGVSRQRLYHDPS 337

Query: 477 ----GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                 H  +     + + N  D        +   DDE +             L      
Sbjct: 338 SYLQWVHPEDRERVRTNFNNLPDEPLDETFRVVRPDDEIR------------WLRVRGKR 385

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + N + +   + +   +   +A       L +++E    F    S++L+ PL  +  +  
Sbjct: 386 VENDEGITRVIGIGQDLTERKA---YEHKLEESNERLEQFAYAASHDLQEPLRMVSSYLQ 442

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+++     L     +++E+    +  +  +++ +L+ + VD     L    + L+ LL 
Sbjct: 443 LIESRYANELGDDGEEFLEFAIDGADRMREMIDALLEYSRVDTQGDPL--EPVDLDRLLE 500

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILK 711
           +V+  +  ++ E+N    +++   L     D  +L Q+F  +LSNA+ +S  G   + ++
Sbjct: 501 DVQTDLQIQLEESN---AIVTTDDLPWIKGDDSQLRQVFQNLLSNAIMYSGDGPPEIHVE 557

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           A      +  SV + G  I  +    VF  F     + +  G G+GL++    I  HGG 
Sbjct: 558 ATYQGRMWEVSVHDEGIGIDPEQQDRVFEVFHRLHGQEEYSGTGIGLALCRRIIERHGGE 617

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S     +T +  +P+ +
Sbjct: 618 IWVESEPGEGSTFSFTLPAAD 638



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 111/354 (31%), Gaps = 32/354 (9%)

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGES 240
           +  +K  N +         +    +  ++ GD  + N   K+  +   EG+V        
Sbjct: 173 IANRKTRNELEEMHS---RISDAFYSLNENGDFTYLNDRAKELIDFTDEGLVGNHVWDTF 229

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
                 +++     +   ++         E  +   +++    +  G +    D++    
Sbjct: 230 EWAADSKLRTEYERAMETQEPTSFEFYYPEPLD-TWFEVNAYPSETGLSVYFRDITDRKV 288

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRY-LQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
              +     E   N+   I I D      Q+ + SF ++W +    L  +PS    L+++
Sbjct: 289 REAEFRMVAE---NIGEIIWITDPETMAYQYISPSFDDIWGVSRQRLYHDPS--SYLQWV 343

Query: 360 RSANKLPEQLNWKTWKEN-IFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRG--GTIW 414
              ++   + N+    +  +   ++      +       + L V      N  G    I 
Sbjct: 344 HPEDRERVRTNFNNLPDEPLDETFRVVRPDDEI------RWLRVRGKRVENDEGITRVIG 397

Query: 415 MFENLTVQVDLETKYNTLVKVQG----ETIDHLSEGVAVFGPDGRI---KLSNPAFRSLW 467
           + ++LT +   E K     +            L E + +     ++   + +N       
Sbjct: 398 IGQDLTERKAYEHKLEESNERLEQFAYAASHDLQEPLRMVSSYLQLIESRYANELGDDGE 457

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLE 519
           +  E  +     +R +      Y       D    +      +D +  LQ  LE
Sbjct: 458 EFLEFAIDGADRMREMIDALLEYSRVDTQGDPLEPVDLDRLLEDVQTDLQIQLE 511


>gi|315280742|ref|ZP_07869555.1| sensor protein kinase WalK [Listeria marthii FSL S4-120]
 gi|313615610|gb|EFR88942.1| sensor protein kinase WalK [Listeria marthii FSL S4-120]
          Length = 610

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 151/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +      L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTFDKPYVLRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKNKGTIIKFTLP 600


>gi|237808385|ref|YP_002892825.1| histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500646|gb|ACQ93239.1| histidine kinase [Tolumonas auensis DSM 9187]
          Length = 1131

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 126/255 (49%), Gaps = 6/255 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A   L    ++   +  R L +  ++   A+  K+ ++  +S+ELR+PL  ++G+  LL 
Sbjct: 643 AHMQLLTQEISAHEKTSRKLEQAKKSAETANNAKSRYLAGLSHELRTPLNVLLGYAQLLS 702

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +   L+ +  +Y   +  +   L +L+  +L+++ ++AG ++L      L  +LNE+ 
Sbjct: 703 DDR--KLDHQTREYAHILRRNGKHLSDLLEGLLEISKIEAGRLELQRVEFNLATMLNELA 760

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +  A +  +  +  + +    L  ++A D+QRL QI   +L+NA+ ++ +G  VI +   
Sbjct: 761 EMFAMEASQKGLEFEYLPCVNLPVYIATDKQRLRQILINLLNNAIKYTREG-KVIFRVTY 819

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            N    FSV++ G  + E   + +FN F  +   +    +G GLGL+I  +  NL GG +
Sbjct: 820 RNQVARFSVQDTGIGLSEHDIQQIFNPFERIQTHNTRAIQGTGLGLTISHALANLMGGDI 879

Query: 773 SISSSDEGVTTINCR 787
           S  S  +  +     
Sbjct: 880 SCQSQPDVGSNFTLT 894


>gi|255601763|ref|XP_002537746.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
 gi|223515241|gb|EEF24637.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
          Length = 263

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 126/261 (48%), Gaps = 16/261 (6%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  +A+ AL EK   L  + + K+ F+ ++S+ELR+PL +++     L  +  G+L++
Sbjct: 3   NREVEQAKLALEEKATQLALSSKYKSEFLANMSHELRTPLNSLLILAQQLSDNPEGNLSA 62

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ ++ + I  S + LL L+NDILDL+ +++G + L+ S    ++L N V ++       
Sbjct: 63  KQVEFAKTIHGSGSDLLTLINDILDLSKIESGTVTLDVSEYRFSNLRNYVDRTFRHMAEA 122

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDNG 717
            ++   V     L +  + D  RL Q+   +LSNA  F+S G+       V      D+ 
Sbjct: 123 KHLGFSVELADNLPTAVMTDTTRLQQVLKNLLSNAFKFTSHGNVSLTISLVTSGWTADHP 182

Query: 718 DFI-------FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
             +       FSV++ G  IP D  + +F  F         +  G GLGLSI      L 
Sbjct: 183 HLLHADAVLAFSVRDTGVGIPADKLQLIFEAFQQADGSTARKYGGTGLGLSISRELARLL 242

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG + + S+    +T    +P
Sbjct: 243 GGEIRVESTVNIGSTFTLYLP 263


>gi|126659307|ref|ZP_01730443.1| Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126619389|gb|EAZ90122.1| Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 835

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 5/262 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           LP   ++    +VT   +  + L  KN  L + + +K+ F+  +S+EL+SPLT ++G + 
Sbjct: 299 LPIPISIFVATDVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSS 358

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+  K+G LN +Q  Y + I  S   L+ LVND+LDL  ++ G +KL++S + + ++  
Sbjct: 359 LLQEDKIGQLNPRQIHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIKEICE 418

Query: 653 EVKQSIATKMHENN---IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
               SI  K    +   +   +  +  L   +AD  RL Q+ + +L NA+ F+       
Sbjct: 419 RAYHSITEKYKSKSDQPLDFSLEIEPGLKQLLADELRLHQMLTHLLDNAIKFTQTEGKFG 478

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           LK  R      F++ + G  IPE+    +F +F    +    Q  G GLGL + +     
Sbjct: 479 LKVNRWEDWLAFTIWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARA 538

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +S  S     +     +P
Sbjct: 539 HGGDISFVSKAGQGSQFTLLLP 560


>gi|296810904|ref|XP_002845790.1| DRK1 histidine kinase [Arthroderma otae CBS 113480]
 gi|238843178|gb|EEQ32840.1| DRK1 histidine kinase [Arthroderma otae CBS 113480]
          Length = 1309

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 22/249 (8%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 706 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 763

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 764 SLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQVDSSVP 823

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------------LKAARDNGDFI 720
              + D  RL QI   ++ NA+ F+  G   +                    A D   + 
Sbjct: 824 DYVIGDPFRLRQIILNLVGNAIKFTEHGEVTLEIKKHVPPPPAEGEPEREVCAEDEYAYE 883

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           FSV++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG V ++S  
Sbjct: 884 FSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEY 943

Query: 779 EGVTTINCR 787
              +T +  
Sbjct: 944 GRGSTFHFT 952


>gi|289937582|ref|YP_003482184.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289533273|gb|ADD07622.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 786

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/633 (13%), Positives = 209/633 (33%), Gaps = 57/633 (9%)

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK-----------KNTETEGIV 232
           + K+    ++ ++ + ++    +   D  G + +AN   +             +  +   
Sbjct: 182 ERKRREQELARYETIVETSPIGITIVDSDGKMQFANDRAEEIYGRSKAQINDLSFDDSDW 241

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-----KIVRVLNSFG 287
            +  +  +     E+   ++I S     +    VS    G           +        
Sbjct: 242 NEVDVDSTPLPDDEKPFPQIIESKDSVFDHVSGVSRP-DGERVWVSVNGAPVYDERGEIE 300

Query: 288 EAGIAI-DVSKEITVNDQLTHTYEILHNLTVA-----IAIFDQNRYLQFHNRSFVELWEI 341
               +I DV++       L  +      L        +  FD+            +    
Sbjct: 301 SVVFSIEDVTERRERQRALEESERRYRTLAENFQNGLVTQFDEELRYTLAAGQAFDYLPH 360

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
               +       E+ +   +    P    ++T  E      + +    +         + 
Sbjct: 361 SPDDVEGQH-LHEVWDTDVADTIEP---VYQTVLEGEKQSIEGTSEGCEW-------IVQ 409

Query: 402 VIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VAVFGPDGRIK 457
           V+  ++  G   G   +  ++T + + E       +      ++   G V +F  D R  
Sbjct: 410 VVPLTDQDGEIHGGTAIALDITERKERERALEESERRYRTLAENFPNGAVGLFDDDLRYT 469

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
                                    +  +    Y +    ++      + + +  S +  
Sbjct: 470 AVGGELLDTVGVSPEDW--------VGNSVYDTYPDELVEEVKQYFEAALEGKMNSFEVE 521

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                +  L  + +P+ N    +    +      ER   E    L  ++E    F   VS
Sbjct: 522 YH---NRNLFVNTLPVRNVDDEVYAGMLVVQDVTER--REYQRKLEASNERLEQFAYAVS 576

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           ++L+ PL  +  +  LL      +L     +++E+    +  +  +++ +L+ + V+   
Sbjct: 577 HDLQEPLRMVTSYLQLLDQRYGDALGEDGEEFIEFAVDGAERMRAMIDGLLEYSRVETQG 636

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
               +  + L+ +L EV+  +  ++ E    I       L +   D  +L Q+F  +L+N
Sbjct: 637 EP--FEPVDLDAILEEVRDDLQLRIAETEAEIT---ADDLPTVAGDASQLRQVFQNLLNN 691

Query: 698 AMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           A+++S  +   + + A R  G +  +V ++G  I  D    VF  F       +  G G+
Sbjct: 692 AIEYSGDEPPRIDIDAERVGGQWQITVSDHGIGINPDNQDRVFEVFQRLHTSNEHPGTGI 751

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL++ +  +  H G + + S     +  +  +P
Sbjct: 752 GLALCQRIVERHDGELWVESEPGDGSAFSFTLP 784



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 143/422 (33%), Gaps = 47/422 (11%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
              + R  ++ G  ++ A             S    +FD +    +  D+     + N +
Sbjct: 62  GRVWWRPATVGGATTQDA-----------VDSDLGKVFDRISDSFYALDEELRFRYLNDT 110

Query: 222 YKKNTE-TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
                   EG +      E+     E  +  +  +   ++             +K ++ V
Sbjct: 111 AADLFGLDEGAIGSDIRNENV---TETYENALCEALETQEPVTFEDYYPP--LDKWFQNV 165

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
              +  G +    ++++      +L     I+    + I I D +  +QF N    E++ 
Sbjct: 166 IYSSESGLSVYTRNITERKRREQELARYETIVETSPIGITIVDSDGKMQFANDRAEEIYG 225

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
              A +     +D     +   +  P   + K + + I     S   H      P+G+ +
Sbjct: 226 RSKAQINDLSFDDSDWNEV-DVDSTPLPDDEKPFPQ-IIESKDSVFDHVSGVSRPDGERV 283

Query: 401 HVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV-FGP 452
            V V   P           ++  E++T + + +       +      ++   G+   F  
Sbjct: 284 WVSVNGAPVYDERGEIESVVFSIEDVTERRERQRALEESERRYRTLAENFQNGLVTQFDE 343

Query: 453 DGRIKL-SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI-ITSFDDE 510
           + R  L +  AF  L  + ++    G H+  +         ++D  D    +  T  + E
Sbjct: 344 ELRYTLAAGQAFDYLPHSPDD--VEGQHLHEV--------WDTDVADTIEPVYQTVLEGE 393

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKA 565
           ++S++GT E     V    ++PL +    +        ++T+    ERAL E     R  
Sbjct: 394 KQSIEGTSEGCEWIV---QVVPLTDQDGEIHGGTAIALDITERKERERALEESERRYRTL 450

Query: 566 DE 567
            E
Sbjct: 451 AE 452


>gi|294508517|ref|YP_003572576.1| sensor histidine kinase [Salinibacter ruber M8]
 gi|294344846|emb|CBH25624.1| sensor histidine kinase [Salinibacter ruber M8]
          Length = 491

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 114/245 (46%), Gaps = 2/245 (0%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R    L E  E LR+AD ++   V +VS++LRSP+ +I G+ + +          ++ +
Sbjct: 240 NRMADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVSMKDGDLPPEERQR 299

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV     ++  L  LVN++ +L+ ++   ++       + +L+ +V      +  E  + 
Sbjct: 300 YVTTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVD 359

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++     +     AD   + +  S ++ NA+ ++ +G  V ++     G+   +V + G 
Sbjct: 360 LRPDLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNKQGEVCVAVADTGP 419

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPED    +F RF          R G GLGL+I ++ + LHG  + + S+    T    
Sbjct: 420 GIPEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTVFRF 479

Query: 787 RIPSK 791
           R+P +
Sbjct: 480 RLPVE 484


>gi|323496614|ref|ZP_08101667.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323318360|gb|EGA71318.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 810

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 115/238 (48%), Gaps = 9/238 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + + + K++F+  +S+E+R+P+  ++G   +L  +    L+ +Q +++  + 
Sbjct: 339 LEAEKVTAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKT---PLSEEQRKHLNTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G ++L      L  ++  +     T   E  ++ KVIS+
Sbjct: 396 ESGDHMMTLLNEILDFSKIEQGHLELENHPFPLESIIGSINSVYYTLCAEKGLQFKVISE 455

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGDFIFSVKNNGSSI 730
                 + +D+ RL QI   +L+NA+ F+S+G   V +   +  D       +++ G  I
Sbjct: 456 VPAERWYRSDKARLRQILFNLLNNAVKFTSRGYVEVYISEKQTADAEYLHIRIRDTGIGI 515

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            ++  + +F  F        RR  G GLGL+IV+    L  G V ++S     +    
Sbjct: 516 AKEAQEKIFKPFEQAETSTTRRFGGTGLGLAIVKQLCELMDGDVHLTSELGIGSCFEV 573


>gi|298493114|ref|YP_003723291.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298235032|gb|ADI66168.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1118

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 129/269 (47%), Gaps = 17/269 (6%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++   +VT+  +  + L  KN  L + + +K+ F+  +S+EL++PLT ++G + LL   
Sbjct: 375 WLVLATDVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQ 434

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +LG LN +Q++Y   I  S   L++++NDILDL  ++ G M+L  S + + ++ +     
Sbjct: 435 QLGELNERQARYASLIHQSGRHLMSVINDILDLTRMETGQMELTPSPVQIREVCDHALSE 494

Query: 658 IATKM---------------HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + T                 H  + +  +  +  L   VAD  RL Q+   +LSNA  F+
Sbjct: 495 VKTLHNQPSKFIHSSRSESKHSQDHQFSLSIEPGLEQIVADELRLRQMLVHLLSNAFKFT 554

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
                + L+  R  G   F+V + G  IPE     +F +F    +    Q  G GLGL +
Sbjct: 555 ETSGEIGLRVNRWEGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVL 614

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
             +   LHGG VS  S +   +     +P
Sbjct: 615 TRALARLHGGDVSFLSQEGKGSQFTLLLP 643


>gi|156973250|ref|YP_001444157.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi
           ATCC BAA-1116]
 gi|156524844|gb|ABU69930.1| hypothetical protein VIBHAR_00931 [Vibrio harveyi ATCC BAA-1116]
          Length = 786

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 156/377 (41%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   + +  ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEVAEHIVDTDQKVF-------ADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 313 ---LTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 369

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  ++
Sbjct: 370 ALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVED 429

Query: 717 GDFIF--SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   V++ G  IP++    +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 DYATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 490 ITVASEEGFGSTFTVSI 506



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVS 267
                N + ++ T   G    + +G S   ++ +E+ + ++ +        +    E   
Sbjct: 176 VFSGCNRAMEELT---GKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKHYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278



 Score = 38.4 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 93/312 (29%), Gaps = 59/312 (18%)

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           + ++ +   +EI++R+ +  A E+   +  + +                           
Sbjct: 108 LQQNIEKLNQEIEERIKAEEAREEAMQDLENEVFQRERT--------------------- 146

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
            ++ + ++       +      I   + +      NR+  EL       L      D   
Sbjct: 147 -QLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYS 205

Query: 354 -ELLEFLRSANK----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            E+ E +   ++      + + ++ W E         E  K  ++  +G+ L        
Sbjct: 206 KEVAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL-------- 257

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-------GVAVFGP---DGRIK- 457
             G +    ++T +   E       + +   I  +S        G+        D ++  
Sbjct: 258 --GLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQLTE 315

Query: 458 -------LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                    N +  +L     + +      R          N  D      +I ++   E
Sbjct: 316 EQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESI-SALMAE 374

Query: 511 RKSLQGTLELLS 522
           +K L+  LE LS
Sbjct: 375 QKGLRFDLERLS 386


>gi|320008190|gb|ADW03040.1| GAF sensor hybrid histidine kinase [Streptomyces flavogriseus ATCC
            33331]
          Length = 1810

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 25/315 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +     D  + L+   + L  S  E      L   Q     V  T+   A + L E+ 
Sbjct: 1271 QELTEQLRDRSQELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERA 1330

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ E I  + + 
Sbjct: 1331 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSD 1390

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  
Sbjct: 1391 LLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPA 1450

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KAARDNGD 718
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         +GD
Sbjct: 1451 TLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPNAIREHLLEAGSLRDADGD 1510

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I FSV + G  I       +F  F         +  G GLGLSI      L GG +  +
Sbjct: 1511 LIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAA 1570

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1571 SEPGRGSTFTLYLPL 1585


>gi|170765897|ref|ZP_02900708.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
 gi|170125043|gb|EDS93974.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
          Length = 778

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVMETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFVLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           +   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 EMLHFDVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 44.5 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++     +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNITQLNQEIADREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   +++ +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVMETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|71282062|ref|YP_271129.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71147802|gb|AAZ28275.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 982

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 118/245 (48%), Gaps = 6/245 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L +    L KA+++K+ F+ ++S+E+R+PLT I+G  + +    +     K  + 
Sbjct: 471 QRTHELEDLTIELEKANQVKSQFLANMSHEIRTPLTAIVGHAEAIIHDDIDK--DKVHED 528

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +S  LL L+NDILDL+ ++A   +L    + L +L+ ++  +  ++  +  +  
Sbjct: 529 IEVIHGNSLHLLELINDILDLSRIEANKFELEVQPLDLAELIQDLSHTFTSQAQQKQLDF 588

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            +         +  D  RL QI   + +NA+ F+  G  V+L   +   + +F+V + G 
Sbjct: 589 TIEHQLPAPFIIHIDSLRLKQILLNLCANAIKFTESG-QVMLSITQQKEELVFTVTDTGI 647

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + E+    VF  F    +   RR  G GLGL++      L  G++ ++S     +    
Sbjct: 648 GLSEEHLAQVFEIFTQADNSISRRFGGSGLGLTLSNQLAKLMLGNIEVTSELGKGSCFCL 707

Query: 787 RIPSK 791
            +P +
Sbjct: 708 TLPYQ 712


>gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1166

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/350 (22%), Positives = 152/350 (43%), Gaps = 16/350 (4%)

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            I   +PA         +   P  + + +     +    +         +   D     +
Sbjct: 316 HILAIDPAIAQPTVEMIHNHIPDPYKQQVIEQLEQVLTGNAVHFQTEHPVRHADGRLTHV 375

Query: 515 QGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEI--- 568
               E++ +S +   +I        Q +         ++   AL E+ +AL+ A++    
Sbjct: 376 FARAEVIWESGVAVKMIGTVLDVTEQKLREQELDEGKLKLRTALEEREKALQCAEQANLA 435

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  II  + L+  +    L SKQS Y+E I ++   LL ++NDIL
Sbjct: 436 KSDFLANMSHEIRTPLNAIINLSYLILQT---PLTSKQSNYLEKIESAGRTLLGVINDIL 492

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D + ++AG + L++    L+D+++ V      +  + ++ +   ++       + D  RL
Sbjct: 493 DYSKIEAGHLVLDHVAFQLDDVISNVANIAIARKEDKDLDLLYHVTPSTPTQMMGDPMRL 552

Query: 688 LQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFV 743
             +   + +NA+ F+  G  VI + A +         FSV++ G  I  +  K +F  F 
Sbjct: 553 GAVLINLTNNAIKFTEHGEVVIRVDAKQQREQHYLLHFSVQDTGIGISAEQQKRLFQSFS 612

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   +  G GLGL+I +  + L GG +S+ S     TT    IP +
Sbjct: 613 QADSSISRRYGGTGLGLAISKKLVELMGGTLSLQSVVGQGTTFEFTIPLQ 662


>gi|296184967|ref|ZP_06853378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296050749|gb|EFG90172.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 473

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 170/380 (44%), Gaps = 19/380 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           E K         E  +++   V ++   +G     N  F  L K  E+ +     +  I 
Sbjct: 60  ENKLRESEIKYRELFNNMRSAVIIYNVKNGG---KNFIFEDLNKAAES-IEKINKVDVIG 115

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVL---EYSIIPLPNAQTML 540
               + + +    DLF  +   +     K L  T        +    Y I  L   + ++
Sbjct: 116 KNFKKIFPKGLNTDLFKIMKHVWRTGVPKHLYPTFYKDYKMNIYRNNYYIYRLSAEEIVV 175

Query: 541 TFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPLTNIIGFTDL---- 593
            + +++ S+  ++ ++EK + + K    ++++  F  ++S+EL++PL  I+G   L    
Sbjct: 176 VYDDISKSIEQQKTISEKEQIIYKTRELEKLRTEFFANISHELKTPLNIILGTIQLNKMI 235

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++  +      K    +     +   LL L+N+++D   +D+  ++LN     + +L+ E
Sbjct: 236 IENGENPINREKLINNINMEKQNCFRLLRLINNLIDSTEIDSKFIELNMVNCNIVNLVEE 295

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           + QS+A  ++ NNI I   +D +      D  ++ +I   +LSN++ F+  G ++ +   
Sbjct: 296 ITQSVAKYIN-NNISITFDTDLEEKIIACDLDKVGRIILNLLSNSVKFTEPGGSIFVNII 354

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
            D      +VK+ G  IP++   ++F+RF         +  G G+GLSIV+S + +H G 
Sbjct: 355 DDKDYITITVKDTGIGIPQNKLNTIFDRFRQVDKSFTRKNEGSGIGLSIVKSLVEMHKGS 414

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S     T    ++P+K
Sbjct: 415 IFVESKYGIGTKFTIKLPAK 434


>gi|258645967|ref|ZP_05733436.1| putative sensor histidine kinase [Dialister invisus DSM 15470]
 gi|260403338|gb|EEW96885.1| putative sensor histidine kinase [Dialister invisus DSM 15470]
          Length = 664

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 152/370 (41%), Gaps = 35/370 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D+E + NT        +D +S+G+ +      I   N   + +       +      R I
Sbjct: 229 DIEEERNT----TRTILDTISDGIILLNSRKEIVDYNERVKEI-----FHVEKDKRFRRI 279

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               S  Y++    D   A+  ++  ER               EY++    N   M T  
Sbjct: 280 ----SFLYHDE---DFLRAVGRAYRSERSR-------------EYTMTLFGNPFRMTTAK 319

Query: 544 NVTDSVRAERALTEKNEALRKA-DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                      L   +       + ++  F  +VS+EL++PLT+I GF +++ +    S 
Sbjct: 320 TELTDGEEGLLLVLSDMTANYMAERMRREFSANVSHELKTPLTSISGFAEIISSGMYQS- 378

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                 +   I   S  +++L++ I+ L+ V+     + +  + +  L+    + I  + 
Sbjct: 379 EEDLKVFGRRILDESHRMMSLIDTIMHLSKVEETETTIKWKPVEVAGLVRYAAELIKPQA 438

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + NI +++  D K      +   L ++   +L NA+ ++ +G  V +K A +NG+ + +
Sbjct: 439 DKKNIVVEL--DMKPVHVYGNAALLSELAMNLLDNAVKYNHEGGHVTVKLAAENGEMVMT 496

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP D    +F RF            G GLGL+I +  +  H G ++ISS++  
Sbjct: 497 VSDTGIGIPVDKQNRIFERFYRAEESRNKFTGGSGLGLAICKHIVEKHKGSLTISSTEGE 556

Query: 781 VTTINCRIPS 790
             T    +P+
Sbjct: 557 GATFIVTLPA 566



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + ++   T  IL  ++  I + +  + +  +N    E++ ++              + 
Sbjct: 228 EDIEEERNTTRTILDTISDGIILLNSRKEIVDYNERVKEIFHVEKD------------KR 275

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGGTIW 414
            R  + L    ++      +   Y+S  + + T  L  G    +       ++   G + 
Sbjct: 276 FRRISFLYHDEDFL---RAVGRAYRSERSREYTMTLF-GNPFRMTTAKTELTDGEEGLLL 331

Query: 415 MFENLTVQVDLETKYNT 431
           +  ++T     E     
Sbjct: 332 VLSDMTANYMAERMRRE 348


>gi|302879057|ref|YP_003847621.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302581846|gb|ADL55857.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 708

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 155/378 (41%), Gaps = 25/378 (6%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           L       ++ Q   ID     V +   DG I   N  F  +     + L    H    +
Sbjct: 267 LTRHTLGELQRQKYVIDK-HAIVTICSVDGLITYCNDKFVEVSGYSHDELIGQDHKIMNS 325

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
               + + +     ++   +   +    + +G       ++  +        + M    +
Sbjct: 326 GHHPKGFFKEMYDTIYRGEVWHAEVCNLAREGHAIWFDTTIAAFMGDDGKPREYMAVRTD 385

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T+  R E A          A   K+ F+ ++S+E+R+P+  ++G  D+L+ +K   LNS
Sbjct: 386 ITEQKRIEEA-------AHAASRAKSEFLANMSHEIRTPMNGVLGMVDILQETK---LNS 435

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + +  I  SS  LLN++NDILD + ++AG + +         +  E+ Q + ++   
Sbjct: 436 MQHRLLGTIQHSSQALLNILNDILDYSKIEAGRLDIECIATCPRVVAEEIVQLMISQA-- 493

Query: 665 NNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSS----KGSTVILKAAR---DN 716
            ++ + V    +L  ++A D  RL QI   +L NA+ F+S    +   V L       D+
Sbjct: 494 KSVALCVFVSPELPLWIASDPSRLRQILLNLLGNAIKFTSGVQGRAGQVSLNVRPCELDD 553

Query: 717 GD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           G     F + +NG  I  ++  ++F  F        R   G GLGLSI      L GG +
Sbjct: 554 GHAGIRFDIADNGIGIAPEVIDTLFQPFAQADASTARKFGGSGLGLSISRRLAGLMGGEI 613

Query: 773 SISSSDEGVTTINCRIPS 790
            +SS     +     +P 
Sbjct: 614 KLSSRIGAGSIFTLELPL 631


>gi|317159482|ref|XP_001827480.2| two-component osmosensing histidine kinase (Bos1) [Aspergillus
           oryzae RIB40]
          Length = 1141

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 13/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  +     
Sbjct: 620 REAAELANQSKSEFLANMSHEIRTPMNGIIGMTQLALDT--DDLPPPTREMLNVVHNLGN 677

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL- 677
            LL +++DILD++ ++A  MK+      L   + +  + +A +  E ++ +    +  + 
Sbjct: 678 SLLVIIDDILDISKIEANHMKIESVPFSLGQTVFKALKILAVEASERSLHLTYHINNSVR 737

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNGSSI 730
              + D  RL QI   ++ NA+ F+  G  + L           D     FSV + G  I
Sbjct: 738 DCVIGDAFRLRQIILNLIGNAIKFTETG-QIQLTIKEAVPRCHPDKYLLEFSVSDTGIGI 796

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +     +F++F        R   G GLGLSI +  +NL GG + ++S+    +T +  
Sbjct: 797 DKSKLDLIFDKFQQADGSMTRKFGGTGLGLSISKKLVNLMGGDIWVTSAVGVGSTFHFT 855


>gi|87307413|ref|ZP_01089558.1| probable sensor/response regulator hybrid [Blastopirellula marina
           DSM 3645]
 gi|87290153|gb|EAQ82042.1| probable sensor/response regulator hybrid [Blastopirellula marina
           DSM 3645]
          Length = 672

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 158/385 (41%), Gaps = 19/385 (4%)

Query: 416 FENLTVQVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            ++   Q  +    N L    +   +  D + + V      G I+  N      +     
Sbjct: 130 LQDRKRQYMVRDLLNRLEHHGRQFSQLADAMPQIVFTTTRQGEIEYLNQRALDYFGVSRQ 189

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            ++       I    S + N    W+      +SF  E +        L         +P
Sbjct: 190 EIAGFDWTSTIFE--SDFANAKIRWERALEKGSSFQCEFRMQHA--RTLEHRWHLARSLP 245

Query: 533 LPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           + +      +   T  ++      E  L    +    A+ +K  F+ ++S+E+R+P+T I
Sbjct: 246 VLDESGKVIRWFGTVTDIHKQKLIEEKLNLALQQAAAANVVKTEFLANMSHEIRTPMTAI 305

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+ +LL   +    + ++  +++ I  +   L+ ++NDILDL+ ++AG + +    + L
Sbjct: 306 LGYAELLAQQE---TDLEKLHFLKVIRQNGEFLVEIINDILDLSKIEAGKLDITLEPLEL 362

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
           + ++ E++  +  +  EN+I   V     +     +D +RL QI   ++ NA+ F+ +GS
Sbjct: 363 SRMIEEIQSLMLVRAAENDIEFNVDFAATVPERIRSDSKRLRQILINLIGNAVKFTQEGS 422

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
            V L  + D     F V + G  + +   + +F  F         +  G GLGL+I +  
Sbjct: 423 -VRLVVSPDAERIQFDVIDTGIGMTQQQVEQLFLPFQQADSSVSRKFGGSGLGLAISQRL 481

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
             + GG +++ S     +     IP
Sbjct: 482 AVMLGGEITVQSQQGQGSVFTLSIP 506


>gi|254555782|ref|YP_003062199.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|254044709|gb|ACT61502.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
          Length = 467

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 157/378 (41%), Gaps = 32/378 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + Q     +     K     + +L  GV V     +++LSNPA   L +           
Sbjct: 108 SYQKSQTRRAELQEKELMMIMRYLPVGVMVIDHRRQVQLSNPAMSELLQV---------S 158

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  +A   ++         L    ITS  ++R ++              ++ P PN Q +
Sbjct: 159 VNTVAHIYTKDIQLYALTKLIEDTITSGKNQRATI--------------TLTPAPNTQVV 204

Query: 540 LTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                     R++     +      +   +++++ FV + S+EL++P+T I GFT+ L +
Sbjct: 205 EASTVYIQGNRSQFQIVLMLYDITEVYMIEQMQDDFVSNASHELKTPITAISGFTETLLS 264

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK-LNYSTIVLNDLLNEVK 655
                 ++   Q++  I+  S  L++L+ D+L L+ + A     L    + +  L+ +  
Sbjct: 265 GAKDDPDT-LDQFLHIIADESQRLIDLIQDVLSLSRIRAQNTTMLTLVPLAVRPLIEQEL 323

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +   +   ++ I    D  L    +D Q+L QI   +L+NA+ ++    +V +     
Sbjct: 324 AVVQQAIERQHLTINNQVDADL-MITSDSQKLSQIIKNLLTNAIKYNRPHGSVTIATMVS 382

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           +  +   VK+ G  I  D  + +F RF   +    ++   G GLGL+IV+  +N   G +
Sbjct: 383 HQTWSLIVKDTGIGISADDQQRIFERFYRASPSRSQQLVSGTGLGLAIVQELVNAMHGTI 442

Query: 773 SISSSDEGVTTINCRIPS 790
            + S     TT+   +P 
Sbjct: 443 DVVSQRGVGTTMTVTLPL 460


>gi|71905865|ref|YP_283452.1| PAS [Dechloromonas aromatica RCB]
 gi|71845486|gb|AAZ44982.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1214

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 132/250 (52%), Gaps = 14/250 (5%)

Query: 549 VRAERALTEKNEALRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              ER L+   E  R+  E     +  F+ ++S+E+R+PL  +IG   LL  +KLG    
Sbjct: 554 NERERTLSAMRELARQEAEGLARARAEFLANMSHEIRTPLNAVIGLAYLLLQNKLG---E 610

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV+ I  +  +LL +VND+LD + +DAG M+L  S+  L+DLL+ +   + T+  E
Sbjct: 611 REMEYVKRIEGAGKLLLAIVNDVLDFSKIDAGKMQLEESSFQLDDLLDNLSSLVRTRAQE 670

Query: 665 NNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DF 719
            N+ ++ V++     +   D  RL QI   ++SNA+ F+++GS    + + + +DN  + 
Sbjct: 671 KNLVLEYVVAPDATQNLRGDALRLSQILINLVSNAIKFTAEGSITVFIDVASNKDNRIEL 730

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F +++ G  +  +   ++F  F        R   G GLGL+I +  I + GG +   S 
Sbjct: 731 EFRIQDTGIGMSAEQTDNLFRAFSQADSSVTRKFGGTGLGLAISKRLIEMMGGTIWAHSV 790

Query: 778 DEGVTTINCR 787
            +  +T + R
Sbjct: 791 PQVGSTFSFR 800


>gi|70726234|ref|YP_253148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           haemolyticus JCSC1435]
 gi|68446958|dbj|BAE04542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 565

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 158/378 (41%), Gaps = 38/378 (10%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           DL  +   L   Q         T++++   V +    G I ++N A+  L++        
Sbjct: 208 DLARRLQKLNNKQKMQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYELFRPN------ 261

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV----LEYSIIP 532
                      ++ Y       +   I+ SF  E K L   +E+L ++V     + S +P
Sbjct: 262 -------GKVENKNYTSYLDPKIQQLILESFKTE-KPLYDQIEILLNNVHHKYFDLSCVP 313

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +         V         +      L+K + ++  FV +VS+EL++P+T+I GF +
Sbjct: 314 ILSKSKKKLQGMVV--------VMHDITNLKKLENLRREFVANVSHELKTPITSIKGFAE 365

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L              ++  I   S  + +LV D+LDL+ ++    ++  + + L++L  
Sbjct: 366 TLIEGAKND-EESLDMFLNIILKESNRIESLVMDLLDLSHIEQ-QTEIETAFMNLSELAY 423

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
               ++  +    +I+I    +  +    A   ++ Q+ + +LSNA+++S + + VI++ 
Sbjct: 424 TTIDNLQNQARYKDIKIVSEIEKDVI-IEAHENKIAQVITNLLSNAINYSLENNEVIVRV 482

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGG 770
            R+  +    +++ G  I +   K +F RF            G GLGLSI +  +  H G
Sbjct: 483 YREGHEVNLEIQDFGIGIDKSDQKHIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHHG 542

Query: 771 HVSISSSDEGVTTINCRI 788
            +++ S+    +      
Sbjct: 543 TINVESNIGEGSLFKVSF 560


>gi|326799596|ref|YP_004317415.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
 gi|326550360|gb|ADZ78745.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
          Length = 670

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/664 (15%), Positives = 233/664 (35%), Gaps = 80/664 (12%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI--------GESRKLFK 245
           +   L       ++  +  G I++ N +          + +            + +KL +
Sbjct: 20  LLHNLVYDSAVAIYACNTEGTIIFYNTAAATLWGRTPNLQKDRWSGAYKVYGPDGKKLAE 79

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV------RVLNSFGEAGIAIDVSKEI 299
           EE    + +      +  E +     G N+   +             G     +D+S   
Sbjct: 80  EEFPTALTAKGLNRTDQSEVIIERPDGTNRKLLVFPKVLYNAAGEITGTHATLVDISDRT 139

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           ++ ++      I+ +   AI   D    +   N     L+      +         +  L
Sbjct: 140 SLEERQAFLSSIVESSDDAIVSKDLQGIITSWNIGAERLFGYTAEEVMGKS-----ITIL 194

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIW- 414
               +L E+     +        +  + ++       G+ + + +T +P    +G  I  
Sbjct: 195 IPKPRLSEE----DYILGQVRKGEKVDHYQTVRLNKYGKEILISLTVSPIRDKQGKIIGA 250

Query: 415 --MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-----------VFGPDGRIKLSNP 461
             +  +++ +V ++       +   ET++ +S  ++           V      +  +  
Sbjct: 251 SKIARDISEEVKVQNAVYQYTRDL-ETLNSISRAISSKLDVQSTLQQVTDASKEVTGAAF 309

Query: 462 -AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA------AIITSFDDERKSL 514
            AF       +  +     +    A   ++        L         I+ S D  + S 
Sbjct: 310 GAFFYHLVEVDGTIKTRFTVSGYPAEALKHLEMPRDTPLLHPTFNGNEIVRSDDIRKDSR 369

Query: 515 QGT------LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----------------AE 552
            G       +      V+ Y   P+ +A+ ++                          A+
Sbjct: 370 YGQNYPYYGMPHGHLPVVSYLAAPVVSAKGVVMGGLFLGHPEPGKFNVHHESLISNITAQ 429

Query: 553 RALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            A+   N  L +  +     K+ F+   S+EL++PLT++ G+  LL+       +   S 
Sbjct: 430 AAIALDNSRLFEEVKALSAKKDEFIALASHELKTPLTSVYGYLQLLEKK---PDSKMASL 486

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +V+        L  LV+++LD++ ++AG ++ N     L +L+ E  +S    ++ ++I 
Sbjct: 487 FVDKSVKQLDKLNKLVSELLDISKIEAGKLQFNTELFDLGELVQETVESFRFSVNSHDIS 546

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +         +  AD+QR+ Q+   +LSNA+ +S   + V ++  +       S+++ G 
Sbjct: 547 LN--RPAYPITVKADKQRIEQVIINLLSNAVKYSPNANEVFVQCEKKETVATISIRDEGM 604

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +     + VF RF    +     G+G+GL +    I  H G +++ S     +     +
Sbjct: 605 GLTSSQQQQVFTRFYRADNTSGIAGLGIGLYLSREIIERHDGRINVVSEYGKGSEFVITL 664

Query: 789 PSKE 792
           P  +
Sbjct: 665 PLPK 668


>gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
 gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
          Length = 775

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/498 (20%), Positives = 191/498 (38%), Gaps = 67/498 (13%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND--ELLEFLRSANKL 365
            L + + I D+N        + + L         D  ++         E    L     L
Sbjct: 65  TLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFGYTEGFRELVLKKNL 118

Query: 366 PEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           P     + +    + +    +          + N   L+V+      G  ++    +  +
Sbjct: 119 PPSSLSIVYSVPVDKVLERIRML--------ILNAILLNVLA-----GAALFTLARMYER 165

Query: 423 V------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLS 475
                      +     +   + +     G+ +    DG   LSN     L  T  N L+
Sbjct: 166 RIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN----ELAHTYLNMLT 221

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                R     C +  N       F  ++TS +    +LQ +           +I     
Sbjct: 222 HEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI----- 266

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                  V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+
Sbjct: 267 ----CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQ 322

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T +   L     + V  ++ SS++LL +++DILD + +++  +K+        +++N + 
Sbjct: 323 TKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHIT 379

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +    +    + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L    
Sbjct: 380 ANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVRA 438

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
           D       V++ G  IP      +F+ F       +   +G GLGL+I E  I++  G +
Sbjct: 439 DGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDI 498

Query: 773 SISSSDEGVTTINCRIPS 790
           S+ S     +    RIP 
Sbjct: 499 SVDSEPGMGSQFTVRIPL 516


>gi|253698664|ref|YP_003019853.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251773514|gb|ACT16095.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 755

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 108/569 (18%), Positives = 223/569 (39%), Gaps = 37/569 (6%)

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
              Q+  G + ++   +   R+ SS         T+S       +  ++ R   + G   
Sbjct: 205 AKLQEVSGNNVEVTLTQRGLRVASSLPERVLESYTLSPAVLDVLERGEVYRGRTAMGTKS 264

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAI----AIFDQNRYLQF--HNRSFVELWEIDLA 344
                  E  ++  L    E + +L+VAI        +   LQ+   +     +    +A
Sbjct: 265 Y------ETIIDPLLNSRGEFVGSLSVAISTETVTSGRRENLQYILASAFLGIICSFGMA 318

Query: 345 FLATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           ++A+      L +   SA ++ E  L+ +        V   + +  +   +         
Sbjct: 319 YIASRHLTGPLRQLAASARRIEEGDLDQRVVGHQRDEVGMLASSFNN---MAESLKERDS 375

Query: 404 VTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           + +   G    + E L   V+  T   +  +      +  L+EGV V   D  + L NPA
Sbjct: 376 IINRKTGDLQELNEQLERMVEQRTSALSMEMGRLEAVLTSLAEGVVVTDRDNLVVLFNPA 435

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            + +++   +        R +  +  R    +   ++   +      ER         + 
Sbjct: 436 AQQIFELVPH--------RVVGQSVERLCEMTGFCNVLEQVGEQTPRERNRGGKKEITVK 487

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              L  +   L +       + ++     +           + D +K  F+  VS+EL++
Sbjct: 488 GKRLNVNKATLQDEAGEFAGMVMSLRDVTKEE---------QVDRMKTEFISTVSHELKT 538

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT+I G   LL  ++   L   + Q +     ++  L+ L+++ILD++ +++G M  N+
Sbjct: 539 PLTSIKGSLQLLL-TRSKWLTDTERQLLTVCFRNTQRLIRLISEILDISGIESGGMIFNF 597

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            ++ + +L     + I +     +I I       L     D  RL+Q+ + +LSNA+ FS
Sbjct: 598 KSLCIGELAVYAVEEIKSYAMGRDITIVNTVGEHLPMVFGDSDRLIQVMTNLLSNAVKFS 657

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSI 760
            +G  V++ A ++    + SV + G  I       +F +F    +  RG+  G GLGL+I
Sbjct: 658 PEGKVVMVTAEQEGNYVVVSVADRGRVIQWSDRDKLFKKFQQIESTERGKIGGTGLGLAI 717

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  +  H G +  +++ E   T +  +P
Sbjct: 718 CKEIVERHHGRIFYTAAKEYGNTFSFTVP 746


>gi|189218172|ref|YP_001938814.1| phosphate regulon sensor protein phoR [Methylacidiphilum infernorum
           V4]
 gi|189185030|gb|ACD82215.1| Phosphate regulon sensor protein phoR [Methylacidiphilum infernorum
           V4]
          Length = 439

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 175/428 (40%), Gaps = 29/428 (6%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPN----GQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
             K W   +  + K ++  K+    P+    G  L   ++ N    +  +   +    + 
Sbjct: 23  KQKFWLSRLHKIEKITDAIKNKRIPPSFLLTGDPLLSAISRNLEAISTELQRLIHASKEE 82

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E   NT++K        ++EG+A+      IK++N +F  +     N             
Sbjct: 83  EINLNTILK-------SMAEGIAIIDRSHLIKIANESFTRILGLSGNPQGKKLVELIQLP 135

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              +   E+       +      + +  L G   + +  V+  S   LP+   +L F ++
Sbjct: 136 EVEKMIEEAFKAQEPLSQEILGTETKGKLSGYFVVDAVPVITKS-QDLPSDIMVLVFRDI 194

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+              ++  +E +  FV +VS+ELR+PL    G+ + L  +   S +  
Sbjct: 195 TE--------------IKMFEEARKEFVINVSHELRTPLAIFKGYVETLTDNPRLSKSEV 240

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           +  Y E +      L +L+ D+L LA +++  + +  + + + + L E  Q +     + 
Sbjct: 241 KRIY-EILKKHCQRLSSLIEDLLLLAKLESRKLTIETTPVSIAEFLEETIQDLHPLFKQK 299

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
              + ++ +  L +   D     Q    ++ NA+ FS     ++++A + + +F+  + +
Sbjct: 300 ECTVNLLIEPDLPTVEIDPFWFQQAVYNLVDNALKFSIPPRKLVIEAQKIDQNFVLKIID 359

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      +F+RF          ++G GLGLSI +  + LHGG +   S  E  TT
Sbjct: 360 NGFGIPSKDLPFIFDRFYRGDKSRSSEQKGTGLGLSITKQIVELHGGQIRAISEPEKGTT 419

Query: 784 INCRIPSK 791
           +    P +
Sbjct: 420 MELTFPLQ 427



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
              ++  +   IL ++   IAI D++  ++  N SF  +       L+ NP   +L+E +
Sbjct: 78  ASKEEEINLNTILKSMAEGIAIIDRSHLIKIANESFTRILG-----LSGNPQGKKLVELI 132

Query: 360 R--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +     K+ E+        +   +   ++     + + +   +       P    + +F 
Sbjct: 133 QLPEVEKMIEEAFKAQEPLSQEILGTETKGKLSGYFVVDAVPVITKSQDLPSDIMVLVFR 192

Query: 418 NLTVQVDLETKYNT 431
           ++T     E     
Sbjct: 193 DITEIKMFEEARKE 206


>gi|149908193|ref|ZP_01896857.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
 gi|149808735|gb|EDM68668.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
          Length = 742

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 128/242 (52%), Gaps = 12/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +T++ +   KA+  K++F+ ++S+E+R+PL  IIG  ++LK S L  +   Q  Y+  I 
Sbjct: 244 ITQEKDNANKANRAKSTFLANMSHEIRTPLNGIIGMAEILKDSPLSPI---QKDYLMTID 300

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS  LL L+ND+LDL+ +++G + ++  T  + +++ +    IA K  E NI + +  D
Sbjct: 301 SSSQTLLMLINDVLDLSKIESGNLVISPHTSNVKEVMFDTASLIAVKAQEKNIELDIQID 360

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFIFSVKNNGS 728
            +L   V  D  +L Q+   + SNA+ F++KG  + L         D+    FSVK+ G 
Sbjct: 361 PELPELVKLDEHKLRQVLMNLASNAVKFTAKG-KITLTLQSKVVDADHIALSFSVKDTGI 419

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I       +F  F    +   R   G GLGLSI    ++L GG+++I+S     +  + 
Sbjct: 420 GIESGKHSKIFEAFQQEDNNTTRHFGGTGLGLSISAKIVSLMGGYIAITSIKGQGSDFHF 479

Query: 787 RI 788
            I
Sbjct: 480 TI 481


>gi|91778882|ref|YP_554090.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691542|gb|ABE34740.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 1194

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 3/247 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +RA+  L      L ++   K+ F+ ++S+ELR+PL + +    LL+ ++ G+L  +Q
Sbjct: 467 DLLRAQDDLAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRAGNLTEEQ 526

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y E I AS++ LL L+NDILDL+ V+AG + +   T+ ++  L  +++          
Sbjct: 527 VRYAETIHASNSDLLVLINDILDLSKVEAGQVTVELETVSIDATLQALEEMFKPMAAARQ 586

Query: 667 IRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +R+      G   +F++D QR+ QI   +LSNA+ F+  G   +  A  + G     V++
Sbjct: 587 LRLAFERLPGTPDTFISDGQRVTQILRNLLSNAVKFTEHGEVALSVAPAEGGMLRIDVRD 646

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I  D    +F  F         Q  G GLGLSI   F  L GG ++++S     + 
Sbjct: 647 SGIGIAPDKLDMIFEAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSV 706

Query: 784 INCRIPS 790
               +P 
Sbjct: 707 FTLWLPL 713


>gi|323487478|ref|ZP_08092772.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
 gi|323399160|gb|EGA91564.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
          Length = 801

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/402 (21%), Positives = 152/402 (37%), Gaps = 31/402 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFG--------PDGRIKLSNPAFRSLWKTEEN 472
            ++         V+   E+ D + EG                     +P+F    K   +
Sbjct: 248 ARIRERQANRRFVRAVNESYDEIYEGELYTDYLRQWKGEKSTPYFRFSPSFSEQIKWAAD 307

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          +  S    + D  +  + +  S+     S       L   + E +   
Sbjct: 308 TIVHPEEKEVFLSRLSPDRLKEDFENGKSEVTISYRRLTPSGSYRWHSLYVRLSEMTTDC 367

Query: 533 LPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           +     +    +   +  R +R L        KA+E K  F+  +S+++R+P+  I+G  
Sbjct: 368 IRVMLYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMA 427

Query: 592 DL----LKTSKLGSLN----------SKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +    L++   G+ N          +K    +E I  SS  LL+L+NDILD++ +++G 
Sbjct: 428 SVARFVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGK 487

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILS 696
           MK+    + L D +  +K  I  +  E      V    ++G F   D  RL QI   +L 
Sbjct: 488 MKIANREMNLKDTIRNIKVMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLG 547

Query: 697 NAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           NA+ ++ +   + L     K         F + + G  + E+    +F+ F      G R
Sbjct: 548 NALKYTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSR 607

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              G GLGLSI    + L  G +S  S     T    +IP K
Sbjct: 608 IFEGTGLGLSISRKLVELLNGTISAESEPGKGTVFTVKIPMK 649


>gi|315127469|ref|YP_004069472.1| sensory transduction histidine kinase [Pseudoalteromonas sp.
           SM9913]
 gi|315015983|gb|ADT69321.1| sensory transduction histidine kinase [Pseudoalteromonas sp.
           SM9913]
          Length = 885

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L        +A+++K+ F+ ++S+E+R+PLT I+GFT+ L  S   + +     ++  I 
Sbjct: 395 LETAIAQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHSDKPTND---KHHLGTIL 451

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +S  LL L+N+ILDL+ ++A  + +  + + +  L+++V+  I     E  +   +   
Sbjct: 452 RNSKHLLELINNILDLSKIEAEKLAVEQTPLNVVQLIHDVESIIKPLAQEKQLSFTINYA 511

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L     +D  RL QI   I SNA+ F+ +G   I    +      F +++ G  +  +
Sbjct: 512 LPLPHTINSDITRLKQILINIASNAVKFTEQGQVTITAKYQAPKTLTFVIEDTGIGMSSN 571

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             K +F  F        RR  G GLGL I ++   L GG VS++S     +     I
Sbjct: 572 QIKRLFTPFEQADATTTRRFGGTGLGLCISKNLAQLLGGDVSVTSEVGVGSCFTIDI 628


>gi|260431941|ref|ZP_05785912.1| PAS domain containing protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415769|gb|EEX09028.1| PAS domain containing protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 502

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 93/490 (18%), Positives = 185/490 (37%), Gaps = 37/490 (7%)

Query: 93  PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLS--------KATEKLRKEGQSFDLV 144
           P               D   L     L  H  I L+           ++L +    F   
Sbjct: 27  PRRRDDFGLSDPGSLLDAVFLFDGTRLISHSDIALAGFESVNDWHDLKRLLQR--DFPGF 84

Query: 145 AETQNDCAIKIEGRVSGSCAFLRILS-------LDGI-YSELAETTLKCKKLSNHI-SVF 195
            ET  D  +  +GR+    A    +        +DG+   +L + T     +        
Sbjct: 85  PETPED--VLDQGRIV-VSAIDCTVEREVLCEWIDGVVRVQLRDLTDAPALVRRDPGDPI 141

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           ++  D   + VW  + +G + W N +Y           +KA G    L  + +   +   
Sbjct: 142 RLAMDKAPYPVWLLNHSGRVSWCNAAYISLV-------RKARGPDTDL-TQPLFPELPDD 193

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV----SKEITVNDQLTHTYEI 311
           S   K         ++ N   + +  V    G    A+DV      E      +    + 
Sbjct: 194 SRPGKKTRIAAPVKDNSNKLWFDLTHVELDEGLLHYAVDVNAIVEAETAQRKFVQTMTKT 253

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
              L++ +AIFD+NR L   N + ++L  +   FL+  PS     + LR  + +PE  N+
Sbjct: 254 FAQLSIGLAIFDRNRQLALFNPALIDLTTLPPDFLSCRPSISSFFDRLRDQHMMPEPKNY 313

Query: 372 KTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           ++W+  +  + +++E   +++TW LP+G    V    +P G   ++FE++T ++ L  ++
Sbjct: 314 RSWRNQMNDLLEAAEDGNYQETWSLPSGSVYSVSGRPHPDGAVAFLFEDITAEITLTRRF 373

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              + +    +D L++ +AVF  DG +  +N A+R +W   +      + + ++      
Sbjct: 374 RAEMDLMQSILDKLADAIAVFADDGTLAFTNYAYRVMWGGSDEVGIEPSTVLDVTRQWQE 433

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
               +         +   +D R      +     + +  ++ P+ N  T++ F   TD  
Sbjct: 434 QCLATPIMGEIREFVQMRND-RAEWSSDIRRRDGTAVLCTVTPISNGATIVRFSLDTDRA 492

Query: 550 RAERALTEKN 559
            A + L    
Sbjct: 493 DATQMLQHTA 502


>gi|299069582|emb|CBJ40854.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CMR15]
          Length = 676

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 156/377 (41%), Gaps = 22/377 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---SNPAFRSLWKTEENRLSPGTHIRNI 483
           T+     +     +      ++++  D  +      NP F        + L   T     
Sbjct: 153 TQQRVSQQRLLAALQASP--ISLYDVDNTMHFTWVHNPVF----GLPPHELLGRTVREVF 206

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-----IIPLPNAQT 538
               +    E+    +   + T  +   + L     +    V+        II L NA  
Sbjct: 207 GRRAASRLTEAGQRVIATGLPTRVEFAFRRLHTQRVVYDVVVMPLRDDTGEIIGLTNAVI 266

Query: 539 MLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +T     ++ RA    A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL  
Sbjct: 267 DITEHRQAEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAM 326

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  +   + +E I  S+   ++L++D+LD++ + +G + L    + L D+L   ++
Sbjct: 327 RPYD--EAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARE 384

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +I     +  I +       +     D  RL Q+F  +L+NA+ F+ +G  V +      
Sbjct: 385 TIEPMARQKQITVDTEY-LPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGA 443

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
              + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH G ++ 
Sbjct: 444 DGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITA 503

Query: 775 SSSD-EGVTTINCRIPS 790
           +SS  +  TT+   +P 
Sbjct: 504 ASSGADLGTTMAVTLPL 520


>gi|284167539|ref|YP_003405817.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284017194|gb|ADB63144.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 683

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 106/650 (16%), Positives = 244/650 (37%), Gaps = 74/650 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSN-HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           L    I +E     L  + +    ++V + L D                W N +     E
Sbjct: 71  LEDVSIAAESPRAELTTEAVRTRELTVRRDLVDDPPCE----------EWRNHA----LE 116

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
            +            +     ++           +  E ++ L  G   +Y +    +   
Sbjct: 117 HDYRTCAAIPLVYEETLYGVLQLATDRPHGFGTSEREALTEL--GVTIAYALDDAESPAN 174

Query: 288 EA-----GIAIDVSKEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                  G A ++++    ++Q    YE +  +    +  FD +    F N + +E+W  
Sbjct: 175 TDRDEREGAAEEMTEVPIESEQKRRLYETIISSTPDLVYAFDLDYRFIFANDALLEMWG- 233

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW---HLPNGQ 398
                     ++ +   LR      E  + +  +  I  V ++ E  +      H+  G+
Sbjct: 234 -------QTYDESIGNTLRENGY--EPWHAEMHEREIDRVVETKEPIRGEVAFEHVERGR 284

Query: 399 TLHVIVTS--NPRGGTIWMF----ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
            ++  + +      G + +      ++T + + E       +     +   S+ V    P
Sbjct: 285 RIYDYIFAPVLDDEGEVEIIAGTTRDITERKEAEEALQKSKERFRALVTASSDVVYRMSP 344

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           D               +E + L     I +   + S + ++    D    +  + D+  +
Sbjct: 345 D--------------WSEMHELEGKEFIADTQESTSDWLDKYIHPDDQERVTAAIDEAIR 390

Query: 513 S-----LQGTLELLSDSVLEY--SIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNE 560
           S     L+  +E +  S+       +P+ +    +        ++T+    ER L + N 
Sbjct: 391 SKSTFELEHQVEQVDGSLGWTFSRAVPMLDEDGDIVEWIGMASDITERKAYERELEQTNA 450

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L++++     F    S++L+ PL  +  +  LL+      L++  ++++E+    +  +
Sbjct: 451 QLKRSNRELKRFAHAASHDLQEPLRMVSSYLQLLEQRYGDDLDADATEFIEFAVDGADRM 510

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             +V+ +L+ + V     + ++ T+    +L +  +++   + E    I      +L + 
Sbjct: 511 RAMVDALLEYSQV--STRENDFETVDCEAVLEQATENLQMAIEEREASIT---SDELPTV 565

Query: 681 VADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             D ++L+Q+F  +L NA+ ++     TV + A R +G+++FSV++NG  I  +    +F
Sbjct: 566 SGDERQLIQLFQNLLDNAITYAGDAPPTVHVSAERGDGEWLFSVRDNGIGIDPEETDDIF 625

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F       +  G G+GL+I +  + +H G + + S     TT    IP
Sbjct: 626 AVFNRLHAPDEYGGTGIGLAICKRIVTIHDGRIWVESEPGEGTTFFFTIP 675


>gi|229589677|ref|YP_002871796.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361543|emb|CAY48419.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 1206

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 164/395 (41%), Gaps = 24/395 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G  +++   +  +   E   +  ++     ID     + V    GR+   N A+  ++  
Sbjct: 554 GWVLYLRNLIHKRAQAERALSDQMRFMSVLIDGTPHPIYVRDRQGRLMACNNAYLDVFGF 613

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           +   +   T +     T +    +S   D  + +      E +     L++    VL   
Sbjct: 614 KLEDVIGKTVVET--DTGNPPQAQSFHADYLSLMERG---EPQIHDRVLKVPGGGVLTIY 668

Query: 530 IIPLP----NAQTMLTFVNVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRS 582
              LP    N   +       D    +R    L E  E    A+  K +F+  +S+E+R+
Sbjct: 669 QWMLPYRDSNGNVVGMIAGWVDVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRT 728

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  +IG  +L + +       + +  +E  S +S  +L L+ DILD+A ++ G + L  
Sbjct: 729 PMNAVIGMIELAQKNAEQGRVDQDA--LEVASMASRSMLELIGDILDIARIETGHLSLTL 786

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
           +   L+++L  V +       +  + + V  D  +  S + D  R  Q+ S +L NA+ F
Sbjct: 787 APANLHEMLASVARVFEGLARDKGLLLHVELDPMIDRSVLIDPMRFKQVVSNLLGNAIKF 846

Query: 702 SSKGSTVILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRG 753
           ++ G  V L A      A D  +    V++ G  I  +  + +FN F+  ++  Q  R G
Sbjct: 847 TATG-QVRLGAQCTPALASDPLNLRLYVEDTGIGISAEDQQRLFNPFIQGSNNDQSARSG 905

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL I  +   + GG + +SS     T ++  +
Sbjct: 906 SGLGLVISRNLCEMMGGQLHLSSVLGKGTRVDVTL 940



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 86/277 (31%), Gaps = 46/277 (16%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + + + +     + LS+ +    VL D     ++ RD+ G ++  N +Y       G   
Sbjct: 559 LRNLIHKRAQAERALSDQMRFMSVLIDGTPHPIYVRDRQGRLMACNNAYLD---VFGFKL 615

Query: 234 QKAIGESRKLFKEEIKKRMISSSAL--------EKNFCETVSTLEHGNNKS-------YK 278
           +  IG++          +  S  A         E    + V  +  G   +       Y+
Sbjct: 616 EDVIGKTVVETDTGNPPQAQSFHADYLSLMERGEPQIHDRVLKVPGGGVLTIYQWMLPYR 675

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE-----------ILHNLT-------VAIA 320
                     AG  +DVS+   +  QL    E            L  ++        A+ 
Sbjct: 676 DSNGNVVGMIAGW-VDVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRTPMNAVI 734

Query: 321 IFDQNRYLQFHN----RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
                  ++       +  V+   +++A +A+    + + + L  A      L+      
Sbjct: 735 -----GMIELAQKNAEQGRVDQDALEVASMASRSMLELIGDILDIARIETGHLSLTLAPA 789

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           N+  +  S     +      G  LHV +        +
Sbjct: 790 NLHEMLASVARVFEGLARDKGLLLHVELDPMIDRSVL 826


>gi|254285757|ref|ZP_04960720.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226]
 gi|150424254|gb|EDN16192.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226]
          Length = 857

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 158/383 (41%), Gaps = 34/383 (8%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +               
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--------------- 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
           I+ +      ++            ITS          T E+    V  +++ P+    Q 
Sbjct: 388 IQFLREDAQNHFLFEILERQLLPTITSAAQGNNPSDVTTEV-DGRVYRWNLSPIMVEGQI 446

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK
Sbjct: 447 ISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLK 506

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + 
Sbjct: 507 RT---PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAID 563

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++   
Sbjct: 564 RIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQL 622

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             GD     +  V + G  I E     +F  F+       R   G GLGL+IV S + + 
Sbjct: 623 IEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEML 682

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G + +SS     T    ++P +
Sbjct: 683 SGQLHVSSEYGIGTRFEIQLPIE 705


>gi|27366593|ref|NP_762120.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
 gi|27358159|gb|AAO07110.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
          Length = 1199

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 158/357 (44%), Gaps = 15/357 (4%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           + +D +   +++    GR+ LSN A+++ ++             ++ + CS  +      
Sbjct: 544 KLLDTIPSMISISDSKGRLVLSNQAYQASFRQCRENGCV-----DLESACSFLHLSEREQ 598

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             F  II     E    +    +   ++L      +     +  F +++D  + E AL E
Sbjct: 599 AEFEEIIQVPASECGLGERFYHVTRKAILHDQ---MEMTHYLTLFSDISDLKQTELALRE 655

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            N A  +A E +N F+  VS+ELR+P+  ++G  ++L        NS+  Q ++    S+
Sbjct: 656 SNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEILSHRLS---NSESQQLLDNAIRSA 712

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK- 676
             L   VNDILD + ++A  ++L+     + + L  V +S         ++  V      
Sbjct: 713 ERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPVLRSFEASAQLKGLQFNVHWQPTA 772

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  R+ QI S +LSNA+ F+  G  + ++ A D       + + G  + E    
Sbjct: 773 YIDAQYDALRVNQIVSNLLSNAVKFTEVG-QIKVEIACDENALSIEIVDTGCGMTEAQLD 831

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            VF  FV       RR  G GLG+SIV+S ++L GG ++  S  E  T ++  IP K
Sbjct: 832 CVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMGGTIAFYSELEQGTKVSVWIPVK 888


>gi|85059559|ref|YP_455261.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Sodalis glossinidius str. 'morsitans']
 gi|84780079|dbj|BAE74856.1| capsular synthesis sensor protein RcsC [Sodalis glossinidius str.
           'morsitans']
          Length = 958

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 120/548 (21%), Positives = 221/548 (40%), Gaps = 57/548 (10%)

Query: 260 KNFCETVSTLEHGNNK---SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLT 316
            +   T   +  GN     +Y ++  L S  +    I + + I + D  + +     NL 
Sbjct: 190 TDRQGTQYWVTPGNRHDSGNYYVLIPLYSGNKLEALIGIEQTIRLEDFASAS-----NLP 244

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEID--LAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           + + + DQN      N   + L   +   A L+T PS      +      L  +      
Sbjct: 245 LGLTLLDQN------NLPLLSLTSGERGAAALSTFPSQPAFFGYNHGFTNLVMKKALSQT 298

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET------K 428
             ++      S    +   L     L  + ++       W+FE    +  L        +
Sbjct: 299 ALSMAFSLPRSAVIDNLNMLLFKLGLLNLFSAAALMYLTWLFE----RRMLAPAEKNVFQ 354

Query: 429 YNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                +   + +     G+++    DG   +SN     L     + L+     R     C
Sbjct: 355 LEENEQFNRKIVASAPVGISILRISDGTNLISN----ELAHNYLSMLTHEDRQRITHIIC 410

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            +  N       F  +ITS +    +LQ +           +I            V+V+ 
Sbjct: 411 GQQVN-------FVDVITSNN---TNLQISFVHSRYRNQNVAI---------CVLVDVSA 451

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            VR E +L +      +A++ K+ F+  VS+ELR+PL  IIG  DLLKT    +L     
Sbjct: 452 RVRMEESLQDMAAVAEQANQAKSMFLATVSHELRTPLYGIIGNLDLLKTK---ALPDGVD 508

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + V  +S SS +LLN+++DILD + +++  +K+        + ++ +  S  + + +  +
Sbjct: 509 RLVMAMSNSSALLLNIISDILDFSKIESEQLKIEPKEYSPRETVSYIVGSYLSLVVKKRL 568

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            +    D  +  S   D  RL Q+ S +L+NA+ F+  G  +++     +G  +FSV++ 
Sbjct: 569 GLYCFIDPDVPDSLRGDPVRLQQVLSNLLNNAIKFTRSG-NIVVTVYCRDGYLLFSVRDT 627

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +       +F+ FV     GQR  +G GLGL+I E  +NL  G +++ S     +  
Sbjct: 628 GVGMQTREVMQLFDPFVQLGEGGQRPIQGTGLGLAICEKLVNLMDGDIAVESERGLGSRF 687

Query: 785 NCRIPSKE 792
             R+P  +
Sbjct: 688 TIRLPLYQ 695


>gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Escherichia coli O157:H7 str. EDL933]
 gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str.
           Sakai]
 gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 126/692 (18%), Positives = 245/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKADPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  + + 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|85704542|ref|ZP_01035644.1| two-component sensor [Roseovarius sp. 217]
 gi|85670950|gb|EAQ25809.1| two-component sensor [Roseovarius sp. 217]
          Length = 454

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 125/246 (50%), Gaps = 2/246 (0%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             + +   + + ++NE  + A E+K+ F+  VS+ELR+PLT+I+G  DL+ +  LG +  
Sbjct: 204 YQERLEQIQLIKQENERAKAALEVKSQFLATVSHELRTPLTSIMGSLDLVNSGVLGEVPE 263

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K    +   + +   L NL++D+LDL  ++AG +  ++  +  N+L++E  +S      +
Sbjct: 264 KLKHVIGIAAKNGHRLANLIDDLLDLQKIEAGEIVFHFKPLNANELVDEAVESTTGYAGK 323

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             I++  I   +   F+ DR RL+Q+ + +LSNA+ FS +  TV ++          SV 
Sbjct: 324 LGIQVTTIHCEEDCRFLGDRSRLIQVMNNLLSNALKFSHERGTVRVRVEALGTRIRISVH 383

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP+D    VF +F         +  G GLGL+I +  +  H G +   S     +
Sbjct: 384 DEGVGIPKDAKDRVFGKFSQVDSSDVRKVGGTGLGLNISKQIVERHNGTIDYVSELGVGS 443

Query: 783 TINCRI 788
           T +   
Sbjct: 444 TFSIEF 449


>gi|168699644|ref|ZP_02731921.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
            2246]
          Length = 1284

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 122/711 (17%), Positives = 260/711 (36%), Gaps = 79/711 (11%)

Query: 124  YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
              K ++A  +  +  Q F           +   G V G  A L    L       AE   
Sbjct: 464  ARKTAEAALRASERRQRFLADLAAATQ-PLAAPGAVMGVSAKLLAEHLRADRCAYAEVED 522

Query: 184  KCKKLSNHISVFK--VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            +   +           +        +  +    ++ AN  Y           +    +  
Sbjct: 523  ESVFVITGDHPVGVPSIVGRWPVAAFGAECV-RLMRANEPYV--VADVATDPRIGPDDRS 579

Query: 242  KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEAGIAIDVSKEI 299
                  I   +         F   ++  + G       +I  V    G    A++ ++ +
Sbjct: 580  AYAATNIGAVICVPLHKHGRFTAAMAVHQRGPRAWAPAEIELVSTVAGRCWEALERARAV 639

Query: 300  TVNDQL--------THTYEILHNLTVAIAIF-DQNRYLQFHNRSFVELWEIDLAFLATNP 350
                +L        +   E+       +A+        +  N  + EL            
Sbjct: 640  EAERRLHTEVAAERSRLEEVFRLAPAFMAVLRGPEHVFELANDRYSELVG---------- 689

Query: 351  SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-----KDTWHLPNG----QTLH 401
                + + +R+A  LPE +  + + E +  VY++ E +     +      +G    + L 
Sbjct: 690  GRALVGKTVRAA--LPE-IEGQGFFEILDRVYRTGEPYLGSDVRAQVRTADGALTERILD 746

Query: 402  VIVTSNPR-----GGTIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAV 449
             +            G +    +LT +   E +            ++    + +  + V V
Sbjct: 747  FVYQPIRDAAGAVSGILVQGIDLTERHRAEIELIRVTAESERQRRLYETVLSNTPDLVYV 806

Query: 450  FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
            F  + R   +N A  ++W          T    I  +C     E     +    I     
Sbjct: 807  FDLNHRFTYANEALLAMWG--------RTRADAIGKSCLEIGYEPWHAAMHDREIDQVAA 858

Query: 510  ERKSLQGTLELLS---DSVLEYSIIPLPNAQTML-----TFVNVTDSVRAERALTEKNEA 561
             RK+++G +         + +Y  +P+  A   +     T  +VTD    E+ L +    
Sbjct: 859  TRKAVRGEVPFTGTNGRRIYDYIFVPVLGANGEVEAVAGTTRDVTDRQAMEQELRDV--- 915

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                D  K+ F+  +++ELR+PL  I     +++    G+ ++ + +    +      ++
Sbjct: 916  ----DRRKDEFIALLAHELRNPLAPIRNELQVIR--LAGTDSAARDRARAIMDRQLAHMV 969

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             +V+D+LD++ ++   M+L  + + L +++    ++   ++ E    ++V    +     
Sbjct: 970  RIVDDLLDVSRINRNKMELRRARVPLAEVIASAVETARPQIDEAGHALEVELPPEPVFLN 1029

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            AD  RL Q+FS +L+N+  ++ +G  V + AA    + + +V++NG  +P     ++F+ 
Sbjct: 1030 ADLTRLAQVFSNLLTNSAKYTPRGGRVRISAAVVGDELVAAVRDNGIGVPAAALTTIFDM 1089

Query: 742  FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
            F       +R   G+G+GL++V+    +HGG V+ +S+ EG  TT   R+P
Sbjct: 1090 FSQVNRTTERSTGGLGIGLALVKGLTEMHGGTVTAASAGEGTGTTFTVRLP 1140



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/463 (13%), Positives = 123/463 (26%), Gaps = 36/463 (7%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
              +      L    ++F L  E           R     A   +  L  +  +      
Sbjct: 51  LGAVRAHIRDLEAAHRTFVLAGEEPPQAL-----RAGEERALAALGELTQLTRDDRAQQD 105

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
           +  ++++  S               R        A   +            +  G  R L
Sbjct: 106 RIAEITDLFSAASRQLRVAAAARRERGPEAGRSAAEAGWADRLAALARGADEFEGAERDL 165

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
            +    +   + S+   +     +           ++R  +                + +
Sbjct: 166 LRTRRNESERAHSSALLSELAAAAIGLVALGLFVWLLRRGSRSRAR-------AAAELIE 218

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           Q       L ++   +   D    +   N    +L     A  A  P  +       S  
Sbjct: 219 QREWLRTALTSIGDGVIATDPAGRVTLMNPVAEQLTGWPAAAAAGRPLTEVFRIVNESTR 278

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-----PRG---GTIWM 415
              E    +   + +            T  +  G   H I  S      P G   G I +
Sbjct: 279 VEVENPALRALAKGVI-----VGLANHTILIARGGAEHPIDDSAAPIRGPDGRINGAILV 333

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRL 474
           F ++T +   E   N L +     +D    G  V+ P   ++ +S+ A   ++  E    
Sbjct: 334 FRDITPRKLQEDARNRLAEALRLAVDAADLGTWVWDPVTDQLTMSDRAA-QIYGVEPGCT 392

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                +R +           D     AA  T +D E   L      +S            
Sbjct: 393 HGRESMRGLIHP-EYRDRSRDESRRAAATRTDYDMEYPLLGDCPVWVSARGRGVYAEDGS 451

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             Q +    ++T    AE AL        +A E +  F+  ++
Sbjct: 452 LVQMLGVVQDITARKTAEAAL--------RASERRQRFLADLA 486


>gi|325921895|ref|ZP_08183706.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325547597|gb|EGD18640.1| Hpt sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 718

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 10/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E+ L    +A   A   K  F+  +S+E+R+PL  II   +L+ +   G L+  Q   
Sbjct: 42  ELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISS---GQLSLDQRDM 98

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++  + SS  LL +V+DILD + ++A  ++L  +T  L +LL+ V Q +        +RI
Sbjct: 99  LQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLRI 158

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVK 724
            +  +  +   V  D  RL Q+   ++ NA+ F+ +GS       L   R      F ++
Sbjct: 159 GLEIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQIR 218

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I +D    +F  F        R   G GLGL+I +  I+L GG + + S      
Sbjct: 219 DTGIGIAQDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGA 278

Query: 783 TINCRIPS 790
           T    IP 
Sbjct: 279 TFWFEIPL 286


>gi|300721895|ref|YP_003711173.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
 gi|297628390|emb|CBJ88955.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
          Length = 773

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 141/307 (45%), Gaps = 14/307 (4%)

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVR 550
           +      L + +  +   E  +LQ  +  +++S+ +Y   + L   Q         + + 
Sbjct: 203 DRIRQGQLNSRVTGAMPGELAALQNGINTVAESLSKYKDEMQLHIDQATSDLQITMEQLE 262

Query: 551 AER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQ 608
            +   LT   +  ++A  IK  F+ ++S+ELR+PL  +IGFT  +LKT     + S+Q +
Sbjct: 263 IQNVELTIAKKRAQEAVRIKTEFLANMSHELRTPLNGVIGFTRQMLKT----PITSQQME 318

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+  I  S+  LL ++NDILD + +++  + L     +L D +NEV + +    +  N+ 
Sbjct: 319 YLYVIDRSANNLLKIINDILDFSRLESNKLLLEQVPFLLRDTVNEVIELLTPAANVKNLP 378

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFI---FSV 723
           +    D KL +  + D  RL QI + ++ NA+ F+ KG   + +K  +     I   F+V
Sbjct: 379 LHHHIDDKLPNLMIGDPIRLQQILTNLIGNAIKFTDKGGVTLDIKLRQQQHHLIQIDFTV 438

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I  +    +F  F        R   G GLGLSI +  +N   G +   S     
Sbjct: 439 TDTGIGIKPEHRPILFQAFNQADASITRHYGGTGLGLSITKRLVNEMKGEIDFISEVSKG 498

Query: 782 TTINCRI 788
           T     I
Sbjct: 499 TVFYFDI 505


>gi|261211895|ref|ZP_05926182.1| sensor histidine kinase [Vibrio sp. RC341]
 gi|260839245|gb|EEX65877.1| sensor histidine kinase [Vibrio sp. RC341]
          Length = 733

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 127/279 (45%), Gaps = 17/279 (6%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E  II +           +    +    L  +    + + + K++F+  +S+E+R+P+  
Sbjct: 312 EGEIIDIRYQYQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNG 371

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   +L   +   L +KQ Q++  +  S   +++L+N+ILD + ++ G  +L+YS   
Sbjct: 372 VLGTAQILLKDE---LTTKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDYSPFP 428

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  ++  +K   ++  +E  ++ ++ S+      +  D+ RL QI   +LSNA+ F+ KG
Sbjct: 429 LRSIIGSIKSIYSSLCYEKGLKFQLHSEISDTRWYYGDKARLRQIVFNLLSNAVKFTEKG 488

Query: 706 STVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             V +        D       V+++G  I ++    +F  F        RR  G GLGL+
Sbjct: 489 -FVSVGLMEEKTHDGNYLTIKVQDSGIGIAQEALGRIFQPFEQAESHTTRRFGGTGLGLA 547

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI------PSKE 792
           IV+    L  G V + S     T    ++      P KE
Sbjct: 548 IVKQIAELMNGSVVVHSEVGRGTCFEVKVKLSITEPIKE 586


>gi|169832041|ref|YP_001718023.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638885|gb|ACA60391.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 571

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 158/369 (42%), Gaps = 42/369 (11%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +           + +++EGV      G + L+N   R++ K                   
Sbjct: 237 ELAREKGKLESVVANMAEGVVAVDSSGEVILTNAPARNILKNGTV--------------- 281

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVNVT 546
                  +   LF  ++ + +      +G +E+ L+ + L     PL +    +      
Sbjct: 282 ------PELTTLFQEVLANGE------RGAVEIDLNGAHLLAQCSPLRHGDGAVFGAV-- 327

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                  A+ +   ALR+ ++++  FV +VS+ELR+PLT+I G  + L    + +  ++ 
Sbjct: 328 -------AVLQDITALRQLEQMRRDFVANVSHELRTPLTSIQGIIEGLIDGVIPA--AEA 378

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y+      S  +  LV D+LDLA ++AG        + L ++L+ V+  +     E  
Sbjct: 379 GRYLRVAHGESLRMNRLVQDLLDLAALEAGRADWELHAVELGEILDRVEIRLQAPRSEKG 438

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
           + I+      L   +A+  RL Q+ + ++ NA+ FS  G  + + A  R +     +V++
Sbjct: 439 LAIRREVPPDLPPLLANENRLEQVLTNLVENAVRFSPPGGEITVAAEKRPHNRITVTVRD 498

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +    V++RF        R   G GLGL+IV+  +   GG V++ SS     +
Sbjct: 499 QGPGIPPEDLPHVWDRFYRVEKSRARETGGTGLGLAIVKQIVEAQGGEVAVESSPGEGAS 558

Query: 784 INCRIPSKE 792
               +P+ +
Sbjct: 559 FFFTLPAAD 567


>gi|121998422|ref|YP_001003209.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121589827|gb|ABM62407.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 633

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 151/407 (37%), Gaps = 13/407 (3%)

Query: 393 HLPNGQTLHVIVTSNPR----GGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           H   G+ LHV     P     G  + +    ++LT     E +   L +    T++ +++
Sbjct: 86  HTATGKRLHVRKLGKPLMDDYGNVLGLRGALQDLTEIKTAERQARRLSQRLETTLESITD 145

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
              +  P  R    N         +   +                + E   + L      
Sbjct: 146 AFFLVDPAWRFTFLNREAERQLNCQREDVLGRVAWEVFPEALGTAFEEHYRYALAQQEPV 205

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            F+     ++   E  +    E   +   +           +  +    L +  E   +A
Sbjct: 206 VFEAYFAPVETWFEARAYPSDEGLAVYFRD--ISQRKQAEAEMAQLNEELHQARERAEQA 263

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K+ F+  +S+ELR+PL  I GF  LL  +        + Q++E I ++   L +L+ 
Sbjct: 264 SRAKSEFLAAMSHELRTPLNAITGFAQLLHQTP-PDETQDRDQHLEQILSAGWHLRDLIG 322

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADR 684
           D++D A ++ G + ++   + ++ L       I  +     + +   SD        AD 
Sbjct: 323 DVIDFAQIETGQLAVHAEPMAIDALARNSVAMITEQARRRGLTVHCQSDPIAPPWARADP 382

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            R  Q+   +LSNA+ +++   T+ +  +   G     V + GS IP      +F  F  
Sbjct: 383 VRSRQVLLNLLSNAVKYNNPHGTITVTWSTAGGSVQVDVADTGSGIPHGRRDRLFEPFER 442

Query: 745 NAH-RGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVTTINCRIP 789
                G   G G+GLS+ +    +  G +  + SS +  TT+   +P
Sbjct: 443 LGREAGSIEGSGIGLSLSQRLARMMSGDLQLLHSSPDRGTTMRLTLP 489



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 22/235 (9%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST-LEHGNNKSYK--- 278
            +      +  +  +G     ++  + + + ++    + F   V      G     +   
Sbjct: 40  LELPPEHRMDLRTGLGLYPPEYRPIVTRAIHTTLHHARPFQLDVDIHTATGKRLHVRKLG 99

Query: 279 ---IVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFH 331
              +    N  G  G   D+++  T   Q           L ++T A  + D      F 
Sbjct: 100 KPLMDDYGNVLGLRGALQDLTEIKTAERQARRLSQRLETTLESITDAFFLVDPAWRFTFL 159

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           NR            +    + +   E L +A    E+       +    V+++     +T
Sbjct: 160 NREAERQLNCQREDVLGRVAWEVFPEALGTA---FEEHYRYALAQQEPVVFEAYFAPVET 216

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           W              +  G  ++ F +++ +   E +   L +   +  +   + 
Sbjct: 217 W-------FEARAYPSDEGLAVY-FRDISQRKQAEAEMAQLNEELHQARERAEQA 263


>gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
 gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
          Length = 949

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 158/370 (42%), Gaps = 37/370 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     + L+     R     
Sbjct: 352 RLEEHEQFNRKIVASAPVGICILRTSDGTNILSN----ELAHNYLSMLTQEDRQRLTEII 407

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFV 543
           C +  N       F  ++T                S++ L+ S +          +   V
Sbjct: 408 CGQQVN-------FVDVLTG---------------SNTNLQISFVHSRYRNENVAICVLV 445

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL 
Sbjct: 446 DVSARVKMEESLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLP 502

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                 V  ++ SS++LL +++DILD + +++  +++        +++  +  +    + 
Sbjct: 503 QGVESLVTAMNNSSSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHISSNYLAMVV 562

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  + +    D  +  +   D  RL Q+ S +L+NA+ F+  G  +IL+    +G   F 
Sbjct: 563 KKRLTLWCFIDSDVPVTLDGDPLRLQQVISNLLNNAIKFTHTGG-IILQVFVKDGYLAFR 621

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IP      +F+ F    +  +   +G GLGL+I E  IN+  G + + S    
Sbjct: 622 VRDTGVGIPAKEITRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGM 681

Query: 781 VTTINCRIPS 790
            +    RIP 
Sbjct: 682 GSQFVVRIPL 691


>gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 126/692 (18%), Positives = 245/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMESFFLPGTLPMGVTILDENG------HTLISLTGPESKIKADPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    DG   LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  + + 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|146307491|ref|YP_001187956.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145575692|gb|ABP85224.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 631

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+   SLN +Q
Sbjct: 239 EQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETT---SLNDEQ 295

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    + S+  LL ++NDILD + ++ G ++L      L +LL    Q       +  
Sbjct: 296 TEYAALATESTEHLLKVINDILDFSRIERGALELEAIPFNLLELLQGSVQVFQHSAQQRG 355

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           +++ + +   L       D  R+ QI   ++ NA+ F+ +G  + ++      D+    F
Sbjct: 356 LQLLLETQPGLQQLEVRGDPTRIRQILVNLIGNALKFTEEG-QIRVETRWQPLDDQVLWF 414

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V ++G  I  +  + +F+ F         +  G GLGL I  +     GG +   S 
Sbjct: 415 TCAVHDSGIGIDAERLEHMFDAFQQADTSISRRYGGTGLGLPIARTLAERMGGTLQAESQ 474

Query: 778 DEGVTTINCRIPS 790
               +     IP 
Sbjct: 475 LGKGSVFTLEIPL 487


>gi|296536415|ref|ZP_06898515.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
           ATCC 49957]
 gi|296263265|gb|EFH09790.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
           ATCC 49957]
          Length = 1111

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 121/258 (46%), Gaps = 6/258 (2%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           P  QT L    +    R + AL +  EA   A+  K+ +V  +S+ELRSPL  I+G+  L
Sbjct: 631 PRRQTSLLMSEIRAHQRTDAALQKAKEAAEAANMAKSRYVIGISHELRSPLNAILGYAQL 690

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+     ++  ++   +  I  S   L  L+  +LD++ ++AG ++L    I   + L++
Sbjct: 691 LERD--TAIPERRRDGLRTIRRSGEHLAALIEGLLDISKIEAGRIELYRDEIRFPEFLDQ 748

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           + Q +  +    +I        ++   V  D +RL QI   +LSNA+ F+  G  V L+ 
Sbjct: 749 IVQMLRLQAEAKSIAFTFDPPERMPEVVHTDERRLRQILINLLSNAIKFTRAGG-VTLRL 807

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGG 770
              +      V + G  I ED    +F  F   A+       GVGLGL+I ++ + + GG
Sbjct: 808 RFRSEVAEIEVIDTGIGIAEDDLARIFEPFQRGANSHAPSTPGVGLGLTITKTLVEVMGG 867

Query: 771 HVSISSSDEGVTTINCRI 788
            +++ S     +    R+
Sbjct: 868 DIAVWSRLGEGSRFRVRL 885


>gi|295135408|ref|YP_003586084.1| sensory transduction histidine kinase [Zunongwangia profunda
           SM-A87]
 gi|294983423|gb|ADF53888.1| sensory transduction histidine kinase [Zunongwangia profunda
           SM-A87]
          Length = 789

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 118/639 (18%), Positives = 248/639 (38%), Gaps = 39/639 (6%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDF--LVWHRDQAGDILWANIS----YKKNT 226
           G+  ++ E     K+L +      ++ D+      +   +  G +   N +    ++ + 
Sbjct: 163 GVARDITEEIEIKKQLESQNKQLDLILDNSPIGISLTQTNFKGALK-VNKALINMFEYSL 221

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLN 284
           E    +  K I         E  ++M+          +     + G       K+  + +
Sbjct: 222 EEFNNLSIKDITHPEDNDSSEQLRQMVEGKIDSYTINKR-YIKKSGETLWAKTKVAAIRD 280

Query: 285 SFGEAGIAI----DVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFV 336
             G+    +    D++KE    +++  +   L     NL   I + D+NR +   N  F 
Sbjct: 281 ENGKILYQVATIEDITKEKIAKEKIEESENRLSTLIVNLQTGILLEDENRKILLTNTKFC 340

Query: 337 ELWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-HKDTWHL 394
            L+ I+    L          E  +   K PEQ       + I  + +  ET   +   L
Sbjct: 341 NLFGIEAPPELLKGADCSNAAEENKKYFKNPEQFV-----QRISELLRKKETVIGEELEL 395

Query: 395 PNG----QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            NG    ++   I       G +W ++++T+Q + +       +     I +++ G+   
Sbjct: 396 VNGSIYERSYIPIYHEGRYKGHLWSYDDITIQKNYKESLKAQKEKYSSIIANMNLGLLEV 455

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             + +I ++N +F  +    E  L   T         S+   + +       +  S++  
Sbjct: 456 DLNDQILMANQSFTEMSGYSEEELLGKTASDIFLIPESKADFDKNDKVRRKGMSNSYEVR 515

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            K+    L+    S      +      ++   +++T+    E    +  + L + +E  N
Sbjct: 516 IKTKDNKLKYWLVSGAPNYDVNGKMLGSIGIHLDITEMKLLETQKEQLLKNLEQQNEHLN 575

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            +   VS++L+SPL NI       K      L  +    ++ +      + +L+ +IL  
Sbjct: 576 EYAHIVSHDLKSPLRNISALLSWTKEDFREKLGEESLMNLDLMQGKVEKMDHLIENILRY 635

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           ++++ G ++     + L +L++E+ + I    H     I V    KL     DR R+ Q+
Sbjct: 636 SSIEDGNIQ--NQELNLQELVSEIIELIYIPEH-----ISVSILRKLPIIYGDRTRIQQV 688

Query: 691 FSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           F  +LSNA+++   +   V +    +   + FS+K+NG  I ++  + +F  F  NA   
Sbjct: 689 FQNLLSNAVNYIDKEKGFVEIDYTENTTHYTFSIKDNGIGIKKEHHQRIFKIF--NALGT 746

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  G+GLSIV+  I+L+ G + + S     T     +
Sbjct: 747 HEKSTGVGLSIVKKVIDLYEGEIWLDSEVGKGTVFFFSL 785



 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 159/430 (36%), Gaps = 46/430 (10%)

Query: 173 GIYSELAETTLKCKKLSNHIS-VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG- 230
            +           K+ ++ +  VF  + D+        D  G++L  N + K     +  
Sbjct: 41  ALRQSNNRLKELLKEKTSQLEGVFVNIIDAYI----IMDIQGNVLKMNQAAKDMLGYDNE 96

Query: 231 ---IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI------VR 281
              +   K +      +     K++  + +   N+   + T + G  K  +I       R
Sbjct: 97  KEVVNLLKLVHSDYVEYTAAAFKQLYHTGSYN-NYKARIIT-KDGTEKIVQINASIIYDR 154

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQF-HNRSFV 336
                   G+A D+++EI +  QL    +    IL N  + I++   N       N++ +
Sbjct: 155 EGKPIAAQGVARDITEEIEIKKQLESQNKQLDLILDNSPIGISLTQTNFKGALKVNKALI 214

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            ++E  L       +N  + +        PE  +       +      S T    +   +
Sbjct: 215 NMFEYSLEEF----NNLSIKDITH-----PEDNDSSEQLRQMVEGKIDSYTINKRYIKKS 265

Query: 397 GQTLH----VIVTSNPRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           G+TL     V    +  G  ++     E++T +   + K           I +L  G+ +
Sbjct: 266 GETLWAKTKVAAIRDENGKILYQVATIEDITKEKIAKEKIEESENRLSTLIVNLQTGILL 325

Query: 450 FGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              + +I L+N  F +L+  E    L  G    N A    +Y+   +    F   I+   
Sbjct: 326 EDENRKILLTNTKFCNLFGIEAPPELLKGADCSNAAEENKKYFKNPEQ---FVQRISELL 382

Query: 509 DERKSLQG-TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            +++++ G  LEL++ S+ E S IP+ +       +   D +  ++      E+L+   E
Sbjct: 383 RKKETVIGEELELVNGSIYERSYIPIYHEGRYKGHLWSYDDITIQK---NYKESLKAQKE 439

Query: 568 IKNSFVQHVS 577
             +S + +++
Sbjct: 440 KYSSIIANMN 449


>gi|269963520|ref|ZP_06177845.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831695|gb|EEZ85829.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 878

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 17/297 (5%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             AII S +          ++  D   E++I              + +  R    + +  
Sbjct: 316 LDAIIHSLNTLIHEHVKGEKVAVDGNDEFTIF------AQQVNRMMEEQNRQTEEILKTK 369

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E+   A+  K+ F+  +S+E+R+PL  IIG T++L  S    L+  Q + +  I  SS  
Sbjct: 370 ESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQS---DLSDHQKEVLTDIDTSSHT 426

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LG 678
           LL L+NDILDL+ +++G ++L+     + +++ +      +K     + + +  D +   
Sbjct: 427 LLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSMILFQSKATSKQLELNINLDERIPP 486

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIPED 733
             + D  R+ QI   ++SNA+ F+ +G   V +              F V + G  I  D
Sbjct: 487 RIMVDDHRIKQIIMNLVSNAVKFTHEGHISVDVDYQESPTQKSVFLTFRVTDTGVGIERD 546

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              ++F  F         Q  G GLGL+I    + + GG ++ +SS    T+    I
Sbjct: 547 KLNTIFEPFTQEDEGISRQFGGTGLGLAICRQLVAMMGGKLTATSSKGIGTSFEFSI 603


>gi|228964549|ref|ZP_04125659.1| hypothetical protein bthur0004_13940 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795149|gb|EEM42645.1| hypothetical protein bthur0004_13940 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 591

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 163/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V     +  +  D  R+ Q+ + ++ NA+  ++    V L     N   IF V+++G
Sbjct: 463 ALTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNADGHVTLVIDSKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|320162058|ref|YP_004175283.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995912|dbj|BAJ64683.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 380

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 136/300 (45%), Gaps = 13/300 (4%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L AA++ S+   R+ +     +++   L + I      + +    +++     ++     
Sbjct: 85  LIAAVVASYFISRQVVNPIRTMMN---LSHRIAEGEYKERLTISGDLSQLDELDQLALSF 141

Query: 559 NEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           N+   K ++   ++   +  V++ELR+PL  I G+ + L    + +  +   Q    I  
Sbjct: 142 NQMADKLEKTETMRRQLIGDVAHELRTPLAAIKGYIEGLMDGVIPAEGNTYQQ----IHD 197

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L  LV+D+ +L+ V++G   L    + L+DL++ ++     +     I+ ++  + 
Sbjct: 198 EINRLQRLVDDLQELSRVESGAFHLKPELVSLSDLMDTIQNIFVPQFIHKGIQFQIQIEP 257

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L   + D+ R+LQ+ + ++ NA+ ++  G  V ++ ++   + + SV + G  I  +  
Sbjct: 258 NLPPVLIDKDRILQVLTNLVGNALQYTPSGGKVTVQISKQRTEILISVSDTGIGISPEHL 317

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPSKE 792
             +FNRF        R   G G+GL+I ++ +  H G +   S  +   +T    +P  +
Sbjct: 318 PFIFNRFYRTDKSRARASGGSGIGLTIAQALVKAHHGRIWAESGGEGKGSTFYFTLPIPK 377


>gi|288555625|ref|YP_003427560.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4]
 gi|288546785|gb|ADC50668.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4]
          Length = 539

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 122/280 (43%), Gaps = 5/280 (1%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++  L+L+     + SI     +          +  +A  +L        KA + K+ F+
Sbjct: 257 IKEELDLIERICTQVSITLDRLSLIAKLQQTNIELEQANTSLVYAQAQAEKAHKAKSDFL 316

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+ELR+PL +I+GF+ LL       L+++Q   V+ I  S   LL ++NDIL L  +
Sbjct: 317 AMMSHELRTPLNSILGFSQLLHQDTGTPLSAQQLAKVDKILKSGRHLLTMINDILKLVKL 376

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS---FVADRQRLLQI 690
           + G   + +  + L+ ++    + I        +++    D KL S     +D  RL Q+
Sbjct: 377 ENGKPFIEFQEVDLDAIVQAALREITPYAQLKKLKMNCE-DLKLKSDQIIYSDPVRLQQV 435

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RG 749
              +LSN++ ++ +   + +           +V++ G  I       +F+ F        
Sbjct: 436 LLNLLSNSVKYNREHGNITISYQVSEHTVTVNVEDTGVGISSVEQSKIFDPFYRTEEFSM 495

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  G G+GLS+V+  +    G + + S     +T    +P
Sbjct: 496 EAEGTGIGLSLVKQIVTEMQGKIGVESQLGEGSTFWIELP 535


>gi|256159347|ref|ZP_05457133.1| PAS domain-containing protein [Brucella ceti M490/95/1]
          Length = 376

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/338 (25%), Positives = 162/338 (47%), Gaps = 15/338 (4%)

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++N   R+  +T E +LS G  ++      +    +  G       IT     ++ L  
Sbjct: 36  RMANEHNRAGGQTFERQLSDGRWLQ-----VNERRTQDGGMVSIGTDITQLKLHQERLVD 90

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +   L  +V + SI        +       +     R  + + E    A+  K+ F+ ++
Sbjct: 91  SERRLMATVHDLSIARKGERDRVR------ELSELARKYSLEKERAEAANRAKSEFLANM 144

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S   LLN++NDILD++ ++A
Sbjct: 145 SHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEA 204

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G   L+   I L  L+NE  + I+ +  E NI ++   +  +    ADR+ + Q+   +L
Sbjct: 205 GHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLL 263

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
           SNA+ F+S G  + ++A +       ++++ G  IP+   + +   F    +       G
Sbjct: 264 SNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTG 323

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 324 SGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 361


>gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 1139

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 100/516 (19%), Positives = 189/516 (36%), Gaps = 62/516 (12%)

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW---KTWKENIFSVYKSSE 386
           F N +++    I   ++   P++    E         E +      TW E +    + S 
Sbjct: 66  FCNDAYLPTVGIKHTWVLGTPASKVWAEIWPDIGPRAESVVKTGNATWDEGLLLFLQRSG 125

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV------------- 433
             ++T+H     T       +  G    +   +T + +       L              
Sbjct: 126 FTEETYH-----TFSYSPLPDDSGAIGGLLCVVTEETERTIDQRRLAMLREMAADLATVK 180

Query: 434 -----------KVQGETIDHLSEGVAVFGPDGR---IKLSN---------PAFRSLWKTE 470
                      +++   +D     V ++  +GR   +  SN         PA  SL   +
Sbjct: 181 TEGELFRTVEHRLKARALDIPFGLVYLYDAEGRRACLACSNGVTPQSPIAPAEISLSSAD 240

Query: 471 ENRL-------SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLS 522
                      +    + N+                  A++       R++  G L    
Sbjct: 241 SIWPAQKVFETNHPVLVENLTERFQNLPTGPWNKPARQAVLVPITQPARQTPAGFLVAGI 300

Query: 523 DSVL----EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +        YS      A  +   ++      AER    + EAL + D  K +F  +VS+
Sbjct: 301 NPYRPFGSAYSGFLDLLAGQIAAALSNARVYEAERQ---RAEALAEIDRAKTTFFSNVSH 357

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E R+PLT ++G  + L     G L++ + + ++ I  +   LL LVN +LD + ++AG +
Sbjct: 358 EFRTPLTLLLGPVEDLLNQAAGKLDADEQEELKTIHRNGLRLLKLVNSLLDFSRIEAGRI 417

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +  Y  I L     E+     + + +  ++  V           DR    +I   ++SNA
Sbjct: 418 QAAYQEIDLAGYTAELASVFRSAIEKAGLKFTVDCPPLAEPIFVDRDMWEKIVLNLISNA 477

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
             F+ +G  + ++  +   +   +V++ G+ IP +    VF RF            G G+
Sbjct: 478 FKFTLQGE-IEVRLRQVGKNAELTVRDTGAGIPAEQVNRVFERFHRVEGTQGRTHEGTGI 536

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL++V   + LHGG VS+SS     +T    +P  +
Sbjct: 537 GLALVHELVKLHGGRVSVSSELGQGSTFTVSLPFGQ 572



 Score =  210 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 144/388 (37%), Gaps = 36/388 (9%)

Query: 421  VQVDLETK--YNTLVKVQGETIDHLSEGVAVFG--PDGRIKL--SNPAFRSLWKTEENRL 474
             ++  E                ++ S+ +   G  PD R +    NP+F +     EN++
Sbjct: 763  ARLRQEAADVIQAREHELSLIYNNTSDVIFYIGVEPDQRFRFLSVNPSFLATTGLSENQV 822

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            + G  +  +    S                T   +E  +           V   SI P+ 
Sbjct: 823  T-GKLVNEVIPEPSCSMVLGHYKQAIQERKTIRWEETSNYPS-----GKKVGMVSITPIF 876

Query: 535  NAQTML-----TFVNVTDSVRAERALTE----KNEALRKADEIKNSFVQHVSYELRSPLT 585
            N   +      T  ++T+  + E  L      +   LR       +F   +S++LR+PL 
Sbjct: 877  NPDGVCINLIGTVHDITERKQIEEKLERLVVERTAKLRDTIGELEAFSYSISHDLRAPLR 936

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++ GF ++LK      +  +   Y+  IS S+  +  L+ D+L  + +     +L    I
Sbjct: 937  SMQGFAEVLKEDCRDQIGPEGQLYLNKISDSARRMDRLIQDVLTFSKM--ARTELILEPI 994

Query: 646  VLNDLLNEVKQ---SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                LL  +     S      +  I+       +L   + +   L Q  S ++ NA+ F 
Sbjct: 995  NTEKLLQTILDSYPSFQPPFSQIAIK------ARLPLVLGNEAALTQCISNLIGNAIKFV 1048

Query: 703  SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
              G+   + + A   +G      K+NG  IP+   + +F  F          G G+GL+I
Sbjct: 1049 QPGTVPQISVWAEEQDGYVRLFFKDNGIGIPKISQERIFGIFQRI--STGYEGTGIGLAI 1106

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRI 788
            V+  +   GG V + S +   +T    +
Sbjct: 1107 VKKAVERMGGKVGLYSEEGRGSTFWLEL 1134


>gi|170708012|ref|ZP_02898461.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0389]
 gi|170127172|gb|EDS96050.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0389]
          Length = 896

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 15/251 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I
Sbjct: 481 ELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVI 540

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   V  
Sbjct: 541 HSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFTVED 600

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NGDFI 720
              +   F  D +R+ QI   +LSNA  F+ KGS             + D          
Sbjct: 601 SDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWIT 660

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ S  
Sbjct: 661 ISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHV 720

Query: 779 EGVTTINCRIP 789
              +T    IP
Sbjct: 721 GEGSTFTVYIP 731


>gi|156973910|ref|YP_001444817.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156525504|gb|ABU70590.1| hypothetical protein VIBHAR_01620 [Vibrio harveyi ATCC BAA-1116]
          Length = 806

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 160/396 (40%), Gaps = 41/396 (10%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL-SNPAFRSLWKTEENRLSPGT 478
           TV + LE     L +   E  +  S GV +   DG++ +  N  F        ++L  G 
Sbjct: 194 TVDLSLE----ALFQFIREHTNQYSLGVVIRDADGQVVIEHN--FHLTKDIYISQLEFGA 247

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSF--------------------DDERKSLQGTL 518
               +    ++       +D   ++                        +   +  Q   
Sbjct: 248 FQWQMDVVNAKVQVAEQVFDQVMSVERGIIPFLLICVLVGYYLLNRYIVEPIVRIAQKVD 307

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +  +  +++ +         ++T  N          L ++    + +   K +F+  +S+
Sbjct: 308 DSKTGGIIDITYDSEDEIGHLITKFNEKTVY-----LEQERIKAQASTNAKTAFLATLSH 362

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  ++G   +L  ++   L  +Q +++  +  S   ++ L+N+ILD + ++ G +
Sbjct: 363 EIRTPMNGVLGTAQILLKTQ---LTDEQRKHLNTLYDSGDHMMTLLNEILDYSKIEQGHI 419

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
           +++ +   ++ +L        T   E  ++ +VIS+   G +   D+ RL Q+   +L+N
Sbjct: 420 EIDNTPFPIDSILGSTNSVYHTLCAEKGLQFRVISNVPEGRWYNNDKARLRQVLFNLLNN 479

Query: 698 AMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           A+ F+ +G   V L    +        SVK+ G  I  D  + +F  F        RR  
Sbjct: 480 AVKFTDRGYVEVELTEYVEGQQTRLRISVKDTGIGISPDAQERIFRPFEQAESSTTRRYG 539

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+IV+      GG +++ S +   T     +
Sbjct: 540 GTGLGLAIVKQISEHMGGSITVQSQECIGTKFVVEL 575


>gi|117619875|ref|YP_855359.1| hybrid sensory histidine kinase BarA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561282|gb|ABK38230.1| sensor protein BarA [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 903

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 13/244 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  LLKT    SL   Q+ Y++ 
Sbjct: 276 ELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKT----SLTPSQTDYMQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++NDILD + ++AG ++L +    L D LNE    +    H+  + + + 
Sbjct: 332 IEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQ 391

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILK--AARDNGDFIFSV--KNN 726
            D ++  ++  D  RL Q+ + +  NA+ F+  G+  V ++   +        +V  ++ 
Sbjct: 392 VDAEVPDYLTGDPMRLQQVLTNLTGNAIKFTEHGNVDVRIEQIGSASGSKVRLNVLIRDT 451

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+  + +F  F         +  G GLGL I +  +   GG +   S     +  
Sbjct: 452 GIGISEEQQRQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSVF 511

Query: 785 NCRI 788
           +  +
Sbjct: 512 SFSL 515


>gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 791

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 5/265 (1%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            +  + N         +    +A+           +A+  K++F+ ++S+ELR+PL  II
Sbjct: 249 RLAAMFNTMAQTIRGQIERLEQAKDHAQRLQFVAEEANRAKSNFLANMSHELRTPLNAII 308

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G++++L+        +   + ++ I  S   LL L+NDILDLA +++G +++    I L 
Sbjct: 309 GYSEILQEECEDLGQTAMIEDLDRIRLSGRHLLTLINDILDLAKIESGKVEILPEEISLP 368

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            LL++V+ ++   + +N  R+ + S   L + ++D  RL QI   +LSNA  F+  G  +
Sbjct: 369 QLLHDVRSTVDPMIIKNENRLVIESAAGLLTMISDETRLRQILVNLLSNAAKFTEHG-RI 427

Query: 709 ILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            L+   + + G   FSV +NG  +       +F  F        R   G GLGL++    
Sbjct: 428 TLRVQPSEEEGWIDFSVHDNGIGMSNAQLSRLFQPFTQADASTTRKYGGTGLGLALSRRL 487

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
             L GG + + S     +T +  +P
Sbjct: 488 AQLLGGDIRVQSELGVGSTFSVHLP 512


>gi|329929173|ref|ZP_08282959.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328936850|gb|EGG33285.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 605

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 155/378 (41%), Gaps = 40/378 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                   +    +++++ G+ +    G+I L N A   +       ++  ++       
Sbjct: 243 RTIRDNEDLLQSVLNNMTGGIVLVSGAGQIILVNRAAEKMLGINAEVITGKSY-----RE 297

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             ++Y  +   +        F +ER      +    +S++        +  TM+      
Sbjct: 298 LKQHYELTKLMEEGLGSQADFHEER-----NVYYPVESIIRI------DGVTMMQEEEQE 346

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              R    L +    +R+ + +++ FV +VS+EL++PL  + GF + L    +    +  
Sbjct: 347 PYRRGMLFLLQDVSDIRRLERMRSEFVANVSHELKTPLAAVKGFAETLLGGGVTDEKTS- 405

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +++ I   S  L  L+ DIL+L+ +++  ++++YS I L+   + + + + T   +  
Sbjct: 406 RSFLQIIYDESERLNRLIGDILELSKIESKRIQMDYSPIHLSAFFDTISEMMRTVAEKKR 465

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720
           I +++    +L     D  +L QIF  +LSNA+ ++ +G  V L A   + +        
Sbjct: 466 ISLELDVPEEL-FMEGDEDKLRQIFMNLLSNAISYTQEGGRVKLTAREKHNNGSADDLVE 524

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGH 771
           F VK++G  IP+     +F RF        R                 IV+  ++LH G 
Sbjct: 525 FVVKDSGIGIPKKDLPRIFERFYRVDKARSRGSGGTGLGLS-------IVKHLVDLHHGT 577

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     ++    +P
Sbjct: 578 IKVESELGIGSSFIIELP 595



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 15/198 (7%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID------ 294
             L    + + + S           +S LE+      KI R  +  G+   AI+      
Sbjct: 182 AALVSYRVAQGLTSPLEKITRVARRISRLEYDAR--VKIHR-KDEIGQLAQAINGMADSL 238

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            ++  T+ D       +L+N+T  I +      +   NR+  ++  I+   +    S  E
Sbjct: 239 QTQLRTIRDNEDLLQSVLNNMTGGIVLVSGAGQIILVNRAAEKMLGINAEVITGK-SYRE 297

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTI 413
           L +       + E L  +       +VY   E+        +G T+       P R G +
Sbjct: 298 LKQHYELTKLMEEGLGSQADFHEERNVYYPVESIIRI----DGVTMMQEEEQEPYRRGML 353

Query: 414 WMFENLTVQVDLETKYNT 431
           ++ ++++    LE   + 
Sbjct: 354 FLLQDVSDIRRLERMRSE 371


>gi|300767565|ref|ZP_07077475.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308179757|ref|YP_003923885.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|300494550|gb|EFK29708.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308045248|gb|ADN97791.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 467

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 158/378 (41%), Gaps = 32/378 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + Q     +     K     + +L  GV V     +++LSNPA   L +           
Sbjct: 108 SYQKSQTRRAELQEKELMMIMRYLPVGVMVIDHRRQVQLSNPAMSELLQV---------S 158

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  +A   ++         L    ITS  ++R ++              ++ P PN Q +
Sbjct: 159 VNTVAHIYTKDIQLYALTKLIEDTITSGKNQRATI--------------TLTPAPNTQVV 204

Query: 540 LTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                     R++     +      +   +++++ FV + S+EL++P+T I GFT+ L +
Sbjct: 205 EASTVYIQGNRSQFQIVLMLYDITEVYMIEQMQDDFVSNASHELKTPITAISGFTETLLS 264

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK-LNYSTIVLNDLLNEVK 655
                 ++   Q++  I+  S  L++L+ D+L L+ + A     L  + + +  L+ +  
Sbjct: 265 GAKDDPDT-LDQFLHIIADESQRLIDLIQDVLSLSRIRAQNTTMLTLAPLAVRPLIEQEL 323

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +   +   ++ I    D  L    +D Q+L QI   +L+NA+ ++    +V +     
Sbjct: 324 AVVQQAIERQHLTINNQVDADL-MITSDSQKLSQIIKNLLTNAIKYNRPHGSVTIATMVS 382

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           +  +   VK+ G  I  D  + +F RF   +    ++   G GLGL+IV+  +N   G +
Sbjct: 383 HQTWSLIVKDTGIGISADDQQRIFERFYRASPSRSQQLVSGTGLGLAIVQELVNAMHGTI 442

Query: 773 SISSSDEGVTTINCRIPS 790
            + S     TT+   +P 
Sbjct: 443 DVVSQRGVGTTMTVTLPL 460


>gi|320585939|gb|EFW98618.1| sensor histidine kinase response [Grosmannia clavigera kw1407]
          Length = 2110

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 113/638 (17%), Positives = 226/638 (35%), Gaps = 131/638 (20%)

Query: 198  LFDSLDFLVWH-RDQAGDILWANISYK----KNTETEGIVFQKAIGESRK---------- 242
            + DSL   V+    Q G I+W N  Y     +  E+       +I    +          
Sbjct: 1105 ILDSLPAHVFVAMPQTGAIVWVNSRYLAYRGQTVESLAQDPWVSIHPDDREEYLKAWSHS 1164

Query: 243  -LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITV 301
                ++  + +                +   + ++  IV+ L S+ +      +++    
Sbjct: 1165 VRTGDQFSRTVRIRRFDGSYRWFHARAVASRDRRN-SIVQFLGSYMDIH-DQHIAELKAA 1222

Query: 302  NDQLTHTYE----ILHNL-TVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNP 350
              +     E    IL NL    +   ++   + F N  ++          + L F+    
Sbjct: 1223 RQEEIEVSEAKHRILANLIPQIVFTANEEEGVTFVNEQWLSYTGQSSRDALGLGFMNFVH 1282

Query: 351  SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
             +D     L     +P   + +  ++ +  V  S            G       +SNP G
Sbjct: 1283 PDD-----LAKCTFIPVPAHLQRRRQQLRHVIASGGA---------GGRKRSDDSSNPSG 1328

Query: 411  GTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSL 466
                     E L+   +L  +                + + V    +GR     P++ + 
Sbjct: 1329 ERTPETGNGEGLSELAELARR----------------DIIIVTEDDNGR-----PSYTTE 1367

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             +          H+     T +  + +                 R S  G+   ++   L
Sbjct: 1368 VRVRSKTGDYRWHLVRCVETGTEDFGKG----------------RNSYFGSATDINGHKL 1411

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                                               L++A + K  F+ ++S+E+R+PL  
Sbjct: 1412 -------------------------------LETKLKEAMDSKTRFLSNMSHEIRTPLIG 1440

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            I G    L+ +   +LN +Q  Y   I  S++ LL ++NDILDL+ VDAG+MKL++    
Sbjct: 1441 ISGMVSFLQDT---TLNEEQRDYTNTIQNSASSLLMIINDILDLSKVDAGMMKLSFEWFH 1497

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
               L+ +V + ++T      + +  I +  +  +V  DR R+ Q+   ++ NA+ F+++G
Sbjct: 1498 TRSLIEDVNELVSTMAIGKGLELNYIVEADVPGWVKGDRVRMRQVLLNVIGNAIKFTARG 1557

Query: 706  ST----VILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLG 757
                   +++ + +    +  FSV + G    ++    +F  F     +   Q  G GLG
Sbjct: 1558 EVFSCCRVVRPSPEPDRIVLEFSVTDTGQGFTKEEADLIFKPFSQIDGSSTRQHGGSGLG 1617

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCR----IPSK 791
            L I    + LHGG +  ++     +T        +P++
Sbjct: 1618 LVISRQLVELHGGKMEGTAEPGKGSTFTFSALFGLPTE 1655


>gi|298377882|ref|ZP_06987832.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 3_1_19]
 gi|298265328|gb|EFI06991.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 3_1_19]
          Length = 942

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    +    A+  K+ F+  +S+E+R+P+  I+G + +   +       K    +E + 
Sbjct: 542 IQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI--DNTDKIKDCLEKVI 599

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL L+ND+LD++ +++G ++L + +      L + +     +     I  + I  
Sbjct: 600 MSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILA 659

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
             L    + D  RL Q+ S +LSNA+ F+     + L+ ++   D       F V + G 
Sbjct: 660 SDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGC 719

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F  F         +  G GLGLSIV+ F  L GG + ++S     +T   
Sbjct: 720 GIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTV 779

Query: 787 RIP 789
            +P
Sbjct: 780 DLP 782


>gi|283850560|ref|ZP_06367848.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574131|gb|EFC22103.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 740

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 16/273 (5%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           L YS+  L +       +      RAE  L E+     KA+  K+ F+ ++S+E+R+P+ 
Sbjct: 316 LLYSLADLASVVMENLRLYDELKTRAE-ELGEQKAIAEKANRAKSEFLANMSHEIRTPMN 374

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G T+L     L  +  +   Y++   +S+  LL+++NDILDL+ ++AG + L+    
Sbjct: 375 GIMGMTELAL---LSEIPDQTRSYLQMAKSSALHLLSIINDILDLSKIEAGKLVLDCQEF 431

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L   L+ V   +A    +N + +  + D  +  + + D+ R  QI + I+ NA+ F+ K
Sbjct: 432 DLLHALHAVCDPLAMTARKNGVALTCVIDPAVPAALLGDKGRFKQILTNIVGNAVKFTRK 491

Query: 705 GSTVILKAARDN--------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGV 754
           G  V +     +           +F V+++G  IP    +++F  F         +  G 
Sbjct: 492 G-QVEVGVRPADSAGGDAGRSRLLFWVRDSGIGIPAGRLEAIFESFAQATSSAHIEFGGT 550

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL I + F+ + GG + + S +   +T +  
Sbjct: 551 GLGLPISKKFVEMMGGSIWVESEEGRGSTFSFT 583


>gi|212288555|sp|A5A2P0|WALK_STASR RecName: Full=Sensor protein kinase walK
 gi|145423879|gb|ABP68577.1| YycG [Staphylococcus sciuri]
          Length = 419

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 160/400 (40%), Gaps = 31/400 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+GV      GR+
Sbjct: 33  TQRVKIYGNDEIGELALSFNNLSKRVQEAQANTESEKRRLDSVITHMSDGVLATDRRGRV 92

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    E       HI +I      Y       D       SF  +  S +G
Sbjct: 93  RIINEMALKMLGL-ECADVEAKHILDILNIDDDY-----SLDDLQENNDSFIIDINSEEG 146

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++ S +      + +   +  ++ V   V  +  L          +  +  FV +V
Sbjct: 147 IIARVNFSTI------IQDTGFINGYIAVLHDVTEQHIL----------ENERREFVANV 190

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+             ++      +  ++ LVND+L L+ +D+ 
Sbjct: 191 SHELRTPLTSMRSYIEALEEGAWRD-PEVAPTFLNVTREETDRMIRLVNDLLQLSKMDSS 249

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++           N+        K      D  ++ Q+F  +++
Sbjct: 250 SDQMNSELINFNMFINKIINRHEMS-QGKNVTFIRDIPVKGLFVEIDPDKMTQVFDNVIT 308

Query: 697 NAMDFSSK-GSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           NA+ +S +    V     ++         +K+NG  IP +    +F+RF        R  
Sbjct: 309 NAIKYSQESHKRVEFHVKQNTLYNRMTIQIKDNGIGIPVNKVDKIFDRFYRVDKARARKM 368

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G GLGL+I +  +  H G +  SS +   T+I   +P +
Sbjct: 369 GGTGLGLAITKEIVEAHKGRIWASSKEGQGTSIYITLPCE 408



 Score = 38.0 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  +   D+   ++  N   +++  ++ A +        +
Sbjct: 60  EAQANTESEKRRLDSVITHMSDGVLATDRRGRVRIINEMALKMLGLECADVEAKH----I 115

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L+ L     + +  +    +EN  S      + +      N  T  +I  +    G I +
Sbjct: 116 LDIL----NIDDDYSLDDLQENNDSFIIDINSEEGIIARVNFST--IIQDTGFINGYIAV 169

Query: 416 FENLTVQVDLE-----------TKYNTLVKVQGETIDHLSEG 446
             ++T Q  LE            +  T +      I+ L EG
Sbjct: 170 LHDVTEQHILENERREFVANVSHELRTPLTSMRSYIEALEEG 211


>gi|83643847|ref|YP_432282.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631890|gb|ABC27857.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 830

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 145/299 (48%), Gaps = 20/299 (6%)

Query: 505 TSFDDERK---SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           T+ DD ++    LQ  +E L+ +  E  I+ L  A          +     R L E  EA
Sbjct: 122 TTHDDYQRVNARLQNKVEALTKAQSE--ILALNTALEKRVEERTAELAETNRKLLEAKEA 179

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+E K+ F+  +S+E+R+P+  I+G  +LL  S+   L+++Q++ +  +  S+  LL
Sbjct: 180 AESANEAKSLFLATMSHEIRTPMNGILGMLELLSHSQ---LSAEQTKMISTVRDSAFSLL 236

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           N++NDILD + ++AG M+L   T+ + +++  V +++A   ++ N+ +    D  +  + 
Sbjct: 237 NILNDILDFSKIEAGRMELENITLSVEEIIEGVAETVAASANKRNLHLHCYVDPDIPDAL 296

Query: 681 VADRQRLLQIFSKILSNAMDFSS--KG--STVILKAARDNG-----DFIFSVKNNGSSIP 731
           V D  RL QI   + SNA  F+    G    V L+A   +          SVK+NG  + 
Sbjct: 297 VGDEVRLRQILFNLCSNATKFTDTANGLQGCVTLRADLLHSAGQLYSIRISVKDNGIGMD 356

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +     +F+ F        RR  G GLGLSI +    + GG + ++S     T     +
Sbjct: 357 QVTLDKLFSPFTQGESSTTRRYGGTGLGLSICKRLTEIMGGAIEVASEPGQGTEFRLNL 415


>gi|258576055|ref|XP_002542209.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
 gi|237902475|gb|EEP76876.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
          Length = 1290

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  
Sbjct: 704 QRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNV 761

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + + +  LL +++DILD++ ++A  M +      +   +    +++A K +E  + +   
Sbjct: 762 VHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQ 821

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSV 723
            D  +    + D  RL QI   ++ NA+ F+  G  V L  ++   +          FSV
Sbjct: 822 VDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGE-VKLTISKSTREICQDEEYAFEFSV 880

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     
Sbjct: 881 SDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGHG 940

Query: 782 TTINCR 787
           +T +  
Sbjct: 941 STFHFT 946


>gi|75812816|ref|YP_320433.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75705572|gb|ABA25244.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 720

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 5/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+   AE  L +  E  + A+ +K+ F+  +S+ELRSPL  I+G++ LL   KL    
Sbjct: 329 DITNHKLAEAELRQSREEAQAANRVKDEFLAVLSHELRSPLNPILGWSSLLLKRKLS--E 386

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +K  + +  I  ++ +   L+ D+LD++ +  G + LN S + L   +    +++     
Sbjct: 387 AKIEEGLATIHRNAQLQSELIEDLLDVSRILRGKLNLNCSPVDLTATIMGAMETVQLAAQ 446

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +I ++   +  +G    D  RL Q+   +LSNA+ F+  G  V +   +       +V
Sbjct: 447 AKSITLQAALEPNIGQVRGDATRLQQVIWNLLSNAVKFTPPGGQVNIHLEQLGNVVQITV 506

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EG 780
            + G  I  D    +F+ F        R   G+GLGL+I    + LH G +   S   + 
Sbjct: 507 SDTGKGIAPDFLAYIFDYFRQEDGSITRKFGGLGLGLAIARHLVELHSGTIEAQSPGVDQ 566

Query: 781 VTTINCRIPS 790
             T   R+P 
Sbjct: 567 GATFIIRLPL 576


>gi|327480106|gb|AEA83416.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1135

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + QT L    +    + +  L +  EA   A+  K+ +V  +S+ELR+PL +I+G+  +L
Sbjct: 648 DRQTHLLMQEIEAHRKTDEQLQKAKEASEAANAAKSRYVTGLSHELRTPLNSILGYAQIL 707

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +  ++  +    +  I  S   LL+L++ +LD+A ++AG + L  S I   + L ++
Sbjct: 708 LRDE--AMAPRHKDALGTIHRSGAHLLSLIDGLLDVAKIEAGKLNLEQSEIAFPEFLQQL 765

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +Q IA +  E  +R    S G++ + V  D +R+ QI   +L NA+ ++  GS + L+A+
Sbjct: 766 RQMIAPQAEEKGLRFHFESQGRMPAVVRGDEKRVRQILINLLGNAVRYTDAGS-ITLRAS 824

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  F + + G  IP +  + +F  F       Q  G+GLGL+I      L GG +S
Sbjct: 825 YLRETATFEIADTGIGIPAEQIERLFQPFERGNPLRQDNGLGLGLTITRMLTALMGGELS 884

Query: 774 ISSSDEGVTTINCRI 788
           + S +   T    R+
Sbjct: 885 VKSQEGQGTVFQLRL 899


>gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
 gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
          Length = 848

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 184/446 (41%), Gaps = 46/446 (10%)

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTL---HVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
             +   Y+  +   DT    +G TL     +  S P    I     ++ Q     +    
Sbjct: 75  GRLAQTYEDYQAVVDT--RLDGATLAEKRKLRESMPVDPDILSA--VSSQRFAFERARWK 130

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR-LSPGTHIRNIAATCSRYY 491
           V+      D+L   +       RI++ +   +       +R +     I  +      Y+
Sbjct: 131 VQHLNTAWDNLPATLT-----HRIQMRSRYMKGDDPFANHRAMISADRIDAVRTKKDLYW 185

Query: 492 NESDGWDLFAAIITS----FDDERKSLQGTLELLSDSVLE-----YSIIPLPNAQTMLTF 542
           +  + + +F  +I        +E ++    L L   ++L+        I L     +   
Sbjct: 186 SGREIYAMFGDVIEPSNLFVHEEFRAYMAELSLSQGAMLQKFLVVTMAILLVLGGGVFVP 245

Query: 543 VNVTDSVRAERALTEKNE------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +++       R   +  E        + AD  K+ F+  +S+E+R+P+  ++G  +LL  
Sbjct: 246 IDIIIRQMISRLQQKTKETDLALTKAKAADRAKSEFLATMSHEIRTPMNGVLGMAELLTR 305

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L+++Q  + + I  S   LL ++NDILD + +DAG M L      L D   +V  
Sbjct: 306 T---DLDTRQRTFTDVILKSGNALLEIINDILDFSKIDAGQMVLAPKPFSLVDTAEDVAT 362

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL---K 711
            +++++ E +I + V I+ G     + D  R+ QI + ++ NA+ F+ +G   V +    
Sbjct: 363 LMSSRVVEKDIELAVRIAPGLPDQLIGDPGRVRQILTNLVGNAVKFTEQGHVMVEINWKD 422

Query: 712 AARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
              ++G+           SV + G  IP D   +VF++F  V  +   +  G GLGL+I 
Sbjct: 423 VEPEDGEGASSRRLALSISVSDTGIGIPPDKIDAVFDKFSQVDGSSTRKHEGTGLGLAIA 482

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
              + L GG + + S+    +T +  
Sbjct: 483 TRLVELMGGQIKLESTVGEGSTFSFT 508


>gi|189426007|ref|YP_001953184.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422266|gb|ACD96664.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 810

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/417 (21%), Positives = 173/417 (41%), Gaps = 30/417 (7%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQV---DLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            L  ++        + +F N  ++        +     +   E +      +  +  DG 
Sbjct: 254 WLWWVLGGVALIALLLLFWNRGLRRIIARKTRELRESERNYRELVQGSDSIILRWKRDGL 313

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           I   N      +  E + L   +  + I        +  D   L A I    D  R +L 
Sbjct: 314 IIFVNDYGARFFGYESSELIGESLFQTIVPHNQ--VDGRDLHQLLADIFIHTDQYRVNLN 371

Query: 516 GTLEL-LSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKA---- 565
             +    S   + ++  P+ + Q      +   +++T  + AE AL +  + L +A    
Sbjct: 372 QNMRRDGSLVWISWNNRPVCDDQGQVLEMLSVGIDITARIDAENALRQNQQDLVQARQAA 431

Query: 566 ---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
              +E K+ F+ ++S+E+R+PL  IIG   LL          +  +  +   A++  LL+
Sbjct: 432 EGANEAKSLFLANMSHEIRTPLNAIIGINSLLVERLDAG---ELKELAKDSMAAANNLLD 488

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFV 681
           +++D+LD++ ++AG +++         L+N++++     + E  +R  V     L    +
Sbjct: 489 IISDVLDISKIEAGKLEIVTVPFDPRMLINQLERMFGAIVREKGLRFDVSLGASLPGLLL 548

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF--SVKNNGSSIPEDMCK 736
           +D  R+ QI   +LSNA+ F+ +G T+ L+      D+        V ++G  I  +  +
Sbjct: 549 SDPARIQQIGVNLLSNALKFTEQG-TIRLRLTGSTLDDSTVQLDLIVSDSGKGILAENIE 607

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            VF+ FV       R   G GLGL+I      + GG + + S     +T  C IP +
Sbjct: 608 RVFSPFVQEDLSTTRKFGGTGLGLAISRHLAEMLGGSIKVESRIGEGSTFTCSIPCQ 664


>gi|167644627|ref|YP_001682290.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347057|gb|ABZ69792.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 570

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 116/238 (48%), Gaps = 6/238 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +     ++A+  K++F+  +S+ELR+P+  ++G    L +++   L+++Q+ YVE I
Sbjct: 185 ALEKAQIEAQEANRAKSAFLAMMSHELRTPMNGVLGMAHALGSTQ---LDARQADYVETI 241

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   L+ ++NDILDL+ ++A  ++   +   +  L  ++++  +       + + +  
Sbjct: 242 VQSGDGLMAILNDILDLSKIEARKLEFEITPFDIRALGRQLQRVWSETARRKGLSLTLDV 301

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             +   ++  D  R+ QI   ++SNA+ F+ +G   +  A    G    +V + G+ +  
Sbjct: 302 APETPQWLAGDPARVRQILLNLVSNALKFTEEGRVALRIAPHAAGGVEITVSDTGAGMSP 361

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +    +F  FV       RR  G GLGLSI      + GG V+  S     +T    +
Sbjct: 362 EQQAKLFTPFVQGDASIARRFGGTGLGLSICRELAEMMGGRVTADSRPGEGSTFTVVL 419


>gi|237719384|ref|ZP_04549865.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451244|gb|EEO57035.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 570

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 108/517 (20%), Positives = 212/517 (41%), Gaps = 47/517 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              N     +++IL NL   I + D   +    + N+       I     A   ++ E+ 
Sbjct: 74  KKTNHSYRFSFDILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEE-AIGHTDYEIY 132

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGTI 413
              R          ++   + +    K     ++ +  P+G    T+ V    +  G   
Sbjct: 133 GEERGE-------KYRHIDKELIQAGK-VYRKEEKYTTPDGITHDTIAVKSIISWEGEKK 184

Query: 414 WMF---ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           W+     ++T   + E +           +K Q   +  +  G+     + R+      +
Sbjct: 185 WLLATRWDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRV-----QW 239

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +              I    S   NE  G   F   I      R ++      + D
Sbjct: 240 EETRQIASLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTI-----RVDD 294

Query: 524 SVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              E +  P+   +        +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++
Sbjct: 295 VDFEVTATPVFGDEKETEIIGGLLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANM 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF++++  ++       + ++V+ IS+++ +LL L++DILDL+ ++AG
Sbjct: 355 SHEIRTPLNAIVGFSEMVCQTEEEEE---RKEFVKIISSNNILLLQLIDDILDLSKIEAG 411

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   +N+L+  + + +  K    +I+I             DR RL Q+     +
Sbjct: 412 TMEFTFAQTDINELMEGICRQMQEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTN 471

Query: 697 NAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           NA+ F+ KGS  +  +      +  F VK+ G  IP D    VF RFV        +G G
Sbjct: 472 NALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSF--IKGTG 529

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+I    +   GG + + S +   +    RIP  E
Sbjct: 530 LGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPRSE 566


>gi|186685420|ref|YP_001868616.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467872|gb|ACC83673.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1235

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 97/509 (19%), Positives = 197/509 (38%), Gaps = 62/509 (12%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +++  +   + L  + V + I D      + N    ++  +D   ++ +         
Sbjct: 443 EALSESQSRLTQFLEAMPVGVFIIDAEGKPYYINHIGQQI--LDRGAMSKDKPFSTRG-- 498

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
              AN      + +       +   +                    T +P          
Sbjct: 499 --CANGFGGSQDARGLANATLTTGTAK-----------------TATPSPL--------- 530

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
              +V  E     L +V    +     G     P  R+ +         + ++  +    
Sbjct: 531 ---RVYAEVSGEQLSEVYQAYL----AGTDRLYPSDRLPILRALLGESTRIDDMEVRHID 583

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-------- 530
            I  I       Y+ES   +L  A+ T FD  ++     L    +  LE  +        
Sbjct: 584 KIIPIEVLGKPIYDESG--NLTFAMATFFDITQRKQAENLLAEYNRTLEAQVKKRTEEFQ 641

Query: 531 --IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             I    A       +   + + ++A   +      A+  K+ F+ ++S+ELR+PL  I+
Sbjct: 642 QVIEQLQATQEELIQSQKIAAQEQQAAVREAARSAAANLAKSEFLANMSHELRTPLNAIL 701

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GFT ++      SL+S+  + +  I+ +   LLNL+NDIL+++ ++AG + LN S+  L 
Sbjct: 702 GFTQVMSQDY--SLSSEHQENLAIINRAGEHLLNLINDILEMSKIEAGRITLNRSSFDLI 759

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS- 706
            LLN +++ +  +    ++++       +  ++  D  +L Q+   +L NA+ F+  G  
Sbjct: 760 HLLNNLEEMLYLRAASKSLQLVFEYAHDIPQYIETDENKLFQVLLNLLGNAIKFTDIGGV 819

Query: 707 TVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLS 759
           T+ L+  ++  +        F V++ G  I       +F  F      R  ++G GLGL+
Sbjct: 820 TLRLRWEQEEENLSYNPRLFFEVQDTGCGITPQEIGLLFEAFEQTEIGRKSQQGTGLGLA 879

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I   ++ L GG +++SS+    +T    I
Sbjct: 880 ISRKYVQLMGGDITVSSTPGMGSTFAFDI 908



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 57/193 (29%), Gaps = 27/193 (13%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           S   + ++ A+  +  + LS   S      +++   V+  D  G   + N   ++  +  
Sbjct: 427 SFSVLEAKNAQMQVLNEALSESQSRLTQFLEAMPVGVFIIDAEGKPYYINHIGQQILDRG 486

Query: 230 GIV----------------FQKAIGESRKLFKEEIKKRMIS------SSALEKNFCETVS 267
            +                  Q A G +         K          +    +   E   
Sbjct: 487 AMSKDKPFSTRGCANGFGGSQDARGLANATLTTGTAKTATPSPLRVYAEVSGEQLSEVYQ 546

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
               G ++ Y   R+       G +  +      +       E+L        I+D++  
Sbjct: 547 AYLAGTDRLYPSDRLPILRALLGESTRIDDMEVRHIDKIIPIEVL-----GKPIYDESGN 601

Query: 328 LQFHNRSFVELWE 340
           L F   +F ++ +
Sbjct: 602 LTFAMATFFDITQ 614


>gi|70731797|ref|YP_261539.1| sensor protein GacS [Pseudomonas fluorescens Pf-5]
 gi|10178628|gb|AAG13658.1|AF246292_1 sensor kinase GacS [Pseudomonas fluorescens]
 gi|68346096|gb|AAY93702.1| sensor protein GacS [Pseudomonas fluorescens Pf-5]
          Length = 917

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQLDYLGTI 326

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL ++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 327 EKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 386

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
                 S V D  RL QI + ++SNA+ F+ +G+ V      +  +       S+++ G 
Sbjct: 387 YRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTGI 446

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 447 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 506

Query: 787 RI 788
            +
Sbjct: 507 SL 508


>gi|269960026|ref|ZP_06174403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835325|gb|EEZ89407.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1187

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 126/258 (48%), Gaps = 12/258 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                +  +       L E  +    A++ K+SF+ ++S+E+R+P+  IIG + L+  S+
Sbjct: 453 YTMRRSQIELQAMAATLQEARDDAESANQAKSSFLANMSHEIRTPMNAIIGMSHLVLESE 512

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN  Q  Y+E +  S+  LL L+NDILD + V+AG ++L  +   L++LL++    +
Sbjct: 513 ---LNKHQKNYIEKVHRSAKSLLRLLNDILDFSKVEAGKLELERTPFSLDELLDQAIDIL 569

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----- 712
           + K  + ++ + +  D  L  + + D  R+ QI   +  NA+ F+ +G  V L+      
Sbjct: 570 SVKSQDKSLDLLLSVDQNLPQTLIGDPYRVKQIILNLGFNAIKFTHQG-KVTLRLNLLHK 628

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
            +        V++ G  +       +FN F        R   G GLGL+I ++ I+L  G
Sbjct: 629 TKQYSTLELVVEDEGIGMTPGQLNKLFNSFSQADTSTTRKYGGSGLGLAITKNIIDLMKG 688

Query: 771 HVSISSSDEGVTTINCRI 788
            +S++S+    +T   + 
Sbjct: 689 TISVTSTLGKGSTFKVQF 706


>gi|260171541|ref|ZP_05757953.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 654

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 130/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          + S+Y
Sbjct: 416 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PHVENREEMSEY 472

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 473 ADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTC 532

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +      +   D+ RL+Q+ +  + NA+ F+  G+  +     D+    F V + G  
Sbjct: 533 TFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCG 592

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +   +T    +P
Sbjct: 593 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650

Query: 790 SKE 792
            ++
Sbjct: 651 YRQ 653


>gi|30261120|ref|NP_843497.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Ames]
 gi|47526275|ref|YP_017624.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183954|ref|YP_027206.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Sterne]
 gi|65318399|ref|ZP_00391358.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165871661|ref|ZP_02216306.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0488]
 gi|167635457|ref|ZP_02393770.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0442]
 gi|167638936|ref|ZP_02397210.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0193]
 gi|170687610|ref|ZP_02878826.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0465]
 gi|177653531|ref|ZP_02935705.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0174]
 gi|190566627|ref|ZP_03019544.1| sensor histidine kinase/response regulator [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816148|ref|YP_002816157.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CDC 684]
 gi|229600347|ref|YP_002865551.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0248]
 gi|254682823|ref|ZP_05146684.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725609|ref|ZP_05187391.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A1055]
 gi|254734235|ref|ZP_05191948.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740116|ref|ZP_05197808.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Kruger B]
 gi|254753457|ref|ZP_05205493.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Vollum]
 gi|254758554|ref|ZP_05210581.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Australia 94]
 gi|30254734|gb|AAP24983.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Ames]
 gi|47501423|gb|AAT30099.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49177881|gb|AAT53257.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Sterne]
 gi|164712562|gb|EDR18094.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0488]
 gi|167513066|gb|EDR88438.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0193]
 gi|167529075|gb|EDR91829.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0442]
 gi|170668423|gb|EDT19170.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0465]
 gi|172081335|gb|EDT66409.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0174]
 gi|190562179|gb|EDV16147.1| sensor histidine kinase/response regulator [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006998|gb|ACP16741.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CDC 684]
 gi|229264755|gb|ACQ46392.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0248]
          Length = 896

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|323493897|ref|ZP_08099014.1| sensor protein TorS [Vibrio brasiliensis LMG 20546]
 gi|323311838|gb|EGA64985.1| sensor protein TorS [Vibrio brasiliensis LMG 20546]
          Length = 966

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 134/281 (47%), Gaps = 12/281 (4%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK---NEALRKADEIKNSFVQH 575
           E  +   LE     L    T  T      + R  + +       +   +A   K++F+  
Sbjct: 417 EAKAKRELEEHKGHLEELVTERTHQLQDANSRLNQEVENHARARQEAEQASRAKSAFLAT 476

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  ++G   LLK +    L+ +Q  YV+ I+ S T LL ++ND+LD + ++A
Sbjct: 477 MSHEIRTPMNGVLGTARLLKDT---GLDRQQGHYVDVINRSGTGLLAILNDVLDYSKIEA 533

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694
           G +++      L  ++++ KQ +  +  E +++++   +  +  F   D  R+ Q+ + +
Sbjct: 534 GHLEIRPVDFNLYAMVDDTKQLLNGRAQEKSLQLEYFIESDVDKFWFGDMTRIGQVLNNL 593

Query: 695 LSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQ 750
           + NA+ F+ KG  V +  A D    G  +F V + G  I E   +++F+ F   +     
Sbjct: 594 VGNAIKFTDKG-NVDIYVAHDPDQQGHVLFEVSDTGVGISEQEQQTLFDAFTQASGGLSS 652

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + G GLGL+I +  +   GG + + S     +     +P +
Sbjct: 653 KGGTGLGLAISKRLVEAMGGEIHLESEIGEGSRFWFSVPLQ 693


>gi|259907954|ref|YP_002648310.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia pyrifoliae Ep1/96]
 gi|224963576|emb|CAX55066.1| Sensor kinase protein RcsC [Erwinia pyrifoliae Ep1/96]
 gi|283477834|emb|CAY73750.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia pyrifoliae DSM 12163]
          Length = 992

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 160/370 (43%), Gaps = 37/370 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L       L+    +R     
Sbjct: 393 RLEEQEQFNRKIVASAPVGICILRTSDGTNILSN----ELAHNYLTLLTQEDRLRLTEMI 448

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFV 543
           C +  N       F  ++T                S++ L+ S +          +   V
Sbjct: 449 CGQQVN-------FVDVLTG---------------SNTNLQISFVHSRYRNENVAICVLV 486

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    +L 
Sbjct: 487 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK---ALP 543

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +    + 
Sbjct: 544 AGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMVV 603

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  + +    D  +  +   D  RL Q+ S +L+NA+ F+  G  +IL+A        F 
Sbjct: 604 KKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGG-IILQAYVKGDYLAFR 662

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  IP      +F+ F       QR  +G GLGL+I E  +N+  G + + S    
Sbjct: 663 VRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGM 722

Query: 781 VTTINCRIPS 790
            +    RIP 
Sbjct: 723 GSQFIVRIPL 732


>gi|152994992|ref|YP_001339827.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150835916|gb|ABR69892.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 1154

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 125/257 (48%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT      +      +RAL    E   +A+E K+ ++  +S+ELR+PL +IIG+  LL
Sbjct: 655 NRQTRKLIREIDAHQETDRALQNAKEQAERANEAKSRYLTGISHELRTPLQSIIGYAQLL 714

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S+  +  S     ++ I  S   L +L+  +LD++ ++AG   L  +T+ L  L++++
Sbjct: 715 --SEKANTPSGHQNGLDIIHRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPKLIDQL 772

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               A +  +  I+++      L    V D +RL QI   +LSNA+ ++ KGS V+ +  
Sbjct: 773 NSMFAMQARDKGIQLQSKILAPLPQHVVTDEKRLRQILINLLSNAVKYTPKGS-VLFEVN 831

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             N    F +++ G  I E   K +F+ F  V +   G   G GLGL+IV+    + GG 
Sbjct: 832 YRNQVAEFVIRDTGVGIKEGHLKRIFDPFERVRDVSTGNLPGTGLGLTIVKLLTEIMGGD 891

Query: 772 VSISSSDEGVTTINCRI 788
           +   S     +     +
Sbjct: 892 IQAHSVVGEGSEFRVSL 908


>gi|254229817|ref|ZP_04923223.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25]
 gi|262395617|ref|YP_003287470.1| sensor protein TorS [Vibrio sp. Ex25]
 gi|151937653|gb|EDN56505.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25]
 gi|262339211|gb|ACY53005.1| sensor protein TorS [Vibrio sp. Ex25]
          Length = 987

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 116/238 (48%), Gaps = 7/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S  
Sbjct: 460 RKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDS---GLNPIQKRYAEIINRSGK 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD + ++AG +++ +    L+ ++ +  Q + ++  E  +      +  + 
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKRLLFSYHIESDVS 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
            +   D  R+ Q+ + ++ NA+ F+ +G   + +     D    +F V + G  I +   
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKDQ 636

Query: 736 KSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +++F+ F        Q  G GLGL+I +  I   GG + + S +   +     IP +E
Sbjct: 637 RTLFDAFTQAEGGMSQTGGTGLGLAISKRIIEAMGGILEVDSEEGHGSRFWFSIPLEE 694


>gi|332995573|gb|AEF05628.1| two-component hybrid sensor and regulator [Alteromonas sp. SN2]
          Length = 1121

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + ++  +S+ELR+PL  ++G++ LL   K GSL+ KQ   +  +  +   L NL+  +L+
Sbjct: 673 SRYLAGLSHELRTPLNVMLGYSQLL--GKDGSLSEKQRDTMGIMRRNGEHLANLIEGLLE 730

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
           ++ ++AG + L+     +  +L ++      +  +  +        KL    V D+QRL 
Sbjct: 731 ISKIEAGRLTLHRDEFNIRAILKQLIDMFELQASKKGLNFHTNISTKLPDVVVGDKQRLR 790

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NA 746
           QI   ++SNA+ ++  G  V       N   IF V + GS I E   +++F  F    N 
Sbjct: 791 QILINLISNAIKYTETG-NVRFDVQYRNEVAIFVVVDTGSGISEAHKETIFQPFEQIRNT 849

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           H     G GLGL+I  S   L GG +S  S     +T   R+
Sbjct: 850 HTQAIGGTGLGLTISRSLTELMGGELSFKSLLGKGSTFTLRL 891


>gi|298292394|ref|YP_003694333.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
 gi|296928905|gb|ADH89714.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
          Length = 1129

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 125/257 (48%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    R +  L +  EA   A+  K+ +V  +S+ELR+PL  I+G+  LL
Sbjct: 643 NRQTALLMREIEAHKRTDAKLQKAKEAAEAANLAKSRYVVGISHELRTPLNAILGYAQLL 702

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     S+   +   +  +  S+  L  L++ +LD++ ++AG + L    + + D L+++
Sbjct: 703 ERD--TSIPPHRRDAIRVVRRSAEHLSGLIDGLLDISKIEAGRLHLTRDEVRIADFLDQL 760

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     I    +   +L + V  D +RL Q+   +LSNA+ F+ +G  V L+ +
Sbjct: 761 VDMFRLQATAKGIDFVYVRPDRLPAVVYTDEKRLRQVLINLLSNAIKFTDRG-RVALRVS 819

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             N    F V+++G  IP    + +F  F      G     G+GLGL+I +    + GG 
Sbjct: 820 YRNQVAEFEVEDSGIGIPAADHRRIFEPFERGERAGTYSTAGIGLGLTITKLLTEIMGGE 879

Query: 772 VSISSSDEGVTTINCRI 788
           +S++S+    ++   ++
Sbjct: 880 ISLTSTPGEGSSFKVKL 896


>gi|107026341|ref|YP_623852.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116692471|ref|YP_838004.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
 gi|105895715|gb|ABF78879.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116650471|gb|ABK11111.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
          Length = 666

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 149/371 (40%), Gaps = 23/371 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D   + +       RI   NPA  S++  +  + +    +  IA    R +   
Sbjct: 142 LLRRVVDASPDAIVGTDAARRITSWNPAAASIFGIDTAQANGRDIVTMIAPRWLRRHAVP 201

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML------------TF 542
             +    A +   D       G     +     ++  P+ + Q                 
Sbjct: 202 ASFADLRAPVGPLDVLCVRPDGGRFRAT-----FAASPIIDGQGHCAGLSLTLREAGERR 256

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            N    +R+ R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L+ +     
Sbjct: 257 RNERHHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRNADGQGF 316

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                Q V+ I  S+  L ++V D+LD +++  G ++L    + L  ++ +  + +    
Sbjct: 317 ---AQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATA 373

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N + +            AD +RL Q+ S +LSNA+ F+  G  + +   R       S
Sbjct: 374 QANGLVLSTEYAMPACVIPADGERLRQLLSNLLSNAIKFTPPGGRINVSLTRAGERVRLS 433

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-E 779
           V + G  I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V  +S+   
Sbjct: 434 VSDTGQGIAPEYLPHLFDTFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVIATSAGAG 493

Query: 780 GVTTINCRIPS 790
              T+   +P+
Sbjct: 494 RGMTVTVTLPA 504


>gi|293610389|ref|ZP_06692690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827621|gb|EFF85985.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 935

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +LN++Q+ Y++ I  
Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNLYLQTIRK 334

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 335 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYAD 394

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    + D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 395 NIPQQVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIG 453

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGS 513

Query: 783 TINCR 787
           T    
Sbjct: 514 TFWFT 518


>gi|37679852|ref|NP_934461.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198597|dbj|BAC94432.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 569

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 132/270 (48%), Gaps = 12/270 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I + N + +   V +       R L    E   +A+  K+ F+  +S+ELR+PL
Sbjct: 171 LIERAVIDIENKEKLQRIVELRT-----RELALAREESERANRAKSEFLAMMSHELRTPL 225

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+LK S    +++     + ++ +S+ +LL +++DILDL+ +++G   L+   
Sbjct: 226 NSVLGMLDVLKQS---DMSAGHINLLSHMESSAGLLLAIISDILDLSKIESGEFSLSPQW 282

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           I +ND +  V            + I++  +      +  D  RL Q+   ++ NA+ F+ 
Sbjct: 283 ININDTVTFVVSQQQLVAATKGLNIELSIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQ 342

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
           +G  + ++   +N +   SV + G  I +D   S+F  F        R   G GLGL+I 
Sbjct: 343 QG-QIDIRVNLENDELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGLAIT 401

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  + L  G V +SS     +T   +IP K
Sbjct: 402 KHLVELMSGTVRVSSQFGKGSTFVVKIPVK 431


>gi|325274521|ref|ZP_08140585.1| two-component sensor protein [Pseudomonas sp. TJI-51]
 gi|324100338|gb|EGB98120.1| two-component sensor protein [Pseudomonas sp. TJI-51]
          Length = 1212

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 164/383 (42%), Gaps = 13/383 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPG 477
           +  +   E   N  +      ++     + V   DGR++  N ++  ++    E  +   
Sbjct: 562 IRQRQRAERALNDQLAFMRALLNGTPHPMYVRDRDGRLQSCNYSYLEAVQARSEQVIGKQ 621

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                 A        ++D   + AA      D    ++G    +   +L Y         
Sbjct: 622 LSASLFADAEQTRQIQADYHKVMAAGSPLIMDRPLRIKGREMTIYHWILPYRDSLGEVQG 681

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKT 596
            +  +++++D  +    L +  +    A+  K++F+  +S+E+R+P+  +IG  +L +K 
Sbjct: 682 IIGGWIDISDRRQLVTELRQAKQQADNANRAKSTFLATISHEIRTPMNAVIGMLELAVKR 741

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G ++      +     S+  LL L+ DILD+  +++G + L    + L  L+  V +
Sbjct: 742 ADQGWVD---RSALALAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVGR 798

Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  +  + ++VI +       + D  R  Q+ S ++SNA+ F+  G   I  +  D
Sbjct: 799 MFDGQARQKGLALEVIIEPAARCHALLDPLRFKQVLSNLVSNAIKFTEHGQVRICVSLLD 858

Query: 716 N-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLH 768
                       V+++G  I  D  + +FN F+      +G R G GLGL+I  +  ++ 
Sbjct: 859 EAPGRPAMLDLEVRDSGIGIHPDDLERLFNPFIQANPHSQGARAGTGLGLAICRNLCDMM 918

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG ++I S ++  T +  ++P +
Sbjct: 919 GGSLTIKSLEDVGTQVRLKMPLQ 941



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L++ ++  + L +     ++ RD+ G +   N SY +  +      
Sbjct: 558 LRLQIRQRQRAERALNDQLAFMRALLNGTPHPMYVRDRDGRLQSCNYSYLEAVQARS--- 614

Query: 234 QKAIGE--SRKLFKEEIKKRMISSS-----ALEKNFCETVSTLEHGNNKS--YKIVRVLN 284
           ++ IG+  S  LF +  + R I +      A              G   +  + I+   +
Sbjct: 615 EQVIGKQLSASLFADAEQTRQIQADYHKVMAAGSPLIMDRPLRIKGREMTIYHWILPYRD 674

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S    +  +L    +   N   A + F
Sbjct: 675 SLGEVQGIIGGWIDISDRRQLVTELRQAKQQADNANRAKSTF 716


>gi|229120612|ref|ZP_04249857.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
 gi|228662897|gb|EEL18492.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
          Length = 896

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|149192072|ref|ZP_01870297.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
 gi|148834097|gb|EDL51109.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
          Length = 939

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L + Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        D L EV    AT  HE  + + + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFEFQDSLEEVVALQATSAHEKGLELTLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKA---ARDNGDFIFSVKNNG 727
            D K+ S  V D  R+ QI + ++ N++ F+ +G+  + ++      D  +  F V++ G
Sbjct: 392 VDSKIPSGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVELKSQKEDRVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  +   GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVGQMGGEISLTSRLHQGSTFW 511

Query: 786 CR 787
             
Sbjct: 512 FT 513


>gi|119188929|ref|XP_001245071.1| hypothetical protein CIMG_04512 [Coccidioides immitis RS]
          Length = 1284

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  
Sbjct: 700 QRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNV 757

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + + +  LL +++DILD++ ++A  M +      +   +    +++A K +E  + +   
Sbjct: 758 VHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQ 817

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSV 723
            D  +    + D  RL QI   ++ NA+ F+  G  V L  ++   +          FSV
Sbjct: 818 VDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGE-VKLTISKSTRELCQDEEYAFEFSV 876

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     
Sbjct: 877 SDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGHG 936

Query: 782 TTINCR 787
           +T +  
Sbjct: 937 STFHFT 942


>gi|13476354|ref|NP_107924.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
 gi|14027115|dbj|BAB54069.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
          Length = 541

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 163/368 (44%), Gaps = 18/368 (4%)

Query: 440 IDHLSEGVAV-FGPDGRIKLSNPAFRSLWKTEENRLS-----PGTHIRNIAATCSRYYNE 493
           ++ + + V +     G +  ++   R+L K     LS        H+ +  +  S   + 
Sbjct: 140 LEDIIDAVILRVARHGEVLDASDKARTLLKLPPELLSGTGFFDRVHLSDRVSYLSALADM 199

Query: 494 SDGW-----DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VN 544
            DG      +L   +  + + +  + Q    L++D+   + +  L   +    F      
Sbjct: 200 RDGAASRRLELRVRLPQNGNGQNDTRQSDSRLMADNYRPFLLELLRGEEQSDVFTLVLRE 259

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-N 603
             ++ R    L + NE    A+  K  F+  VS+ELR+PL  IIGF+D+L     G+  +
Sbjct: 260 NDETARLREELAQANETAAAAEVAKGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKD 319

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV  +  S   LL +V  ILD++ +++G    +       + ++  +  +  +  
Sbjct: 320 PRQKEYVTLVRDSGQHLLAVVTSILDVSRIESGAYTADPEPFRFMEAVDMCQSMMRLQAQ 379

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             NI ++       G   ADR+ + Q+   ++SNA+ F+  G  V++ A R      F V
Sbjct: 380 AKNIDLQTQIAPDAGDINADRRAVQQMLINLVSNAIKFTPDGGDVVVGAKRIGSRLHFWV 439

Query: 724 KNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I E+   ++   F    N +  +  G GLGLS+V+  + LH G +SI S     
Sbjct: 440 RDTGIGIAEEDFANLGKPFTQIQNDYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEG 499

Query: 782 TTINCRIP 789
           TT+   +P
Sbjct: 500 TTVTISLP 507


>gi|315180554|gb|ADT87468.1| sensor histidine kinase [Vibrio furnissii NCTC 11218]
          Length = 796

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 159/371 (42%), Gaps = 28/371 (7%)

Query: 441 DHLSE---GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           DH  E   G+ ++   G I +S   F        +R   G     +    +R       +
Sbjct: 197 DHAEEYGLGIKLYDAYGSI-ISEHNFHLRRGAYVSRYPFGDFHWQLEVVNARRLVNEQVY 255

Query: 498 DLFAAIITSFDDER------------KSLQGTLELLSDSV---LEYSIIPLPNAQTMLTF 542
           +L + +                    + L   + +++  V   +E  II +P        
Sbjct: 256 ELISGVERGLIPLLLLCVMFGYYLLNRYLIKPIVVIAQKVDESMEGGIIDVPYHSQDEIR 315

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L  S    L
Sbjct: 316 YLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKS---DL 372

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q Q ++ +  S   ++ L+N+ILD + ++ G ++L+ S+  L+ ++  V    +T  
Sbjct: 373 KPRQRQQMKSLYESGEHMMTLLNEILDFSKIEQGHLELDRSSFPLDSIIGSVTSVYSTLC 432

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGD-- 718
           +E  ++ KV S   +   + +D+ RL QI   +L+NA+ F+ +G   VIL+         
Sbjct: 433 NEKGLQFKVYSQIEENRWYYSDKARLRQILFNLLNNAVKFTYRGLVEVILEEETVGEQLY 492

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I  V++ G  IP+D    +F  F        RR  G GLGL+IV+    L  G V++ S
Sbjct: 493 LIIQVRDTGIGIPKDAQNKIFKPFEQAESSTTRRFGGTGLGLAIVKQITELMRGSVNVVS 552

Query: 777 SDEGVTTINCR 787
                T+   R
Sbjct: 553 EVGIGTSFTIR 563


>gi|312891713|ref|ZP_07751222.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311295796|gb|EFQ72956.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 604

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 11/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L    E   K+ + ++ F+  +S+E+R+PL  +IG ++LL      S    Q + 
Sbjct: 206 QLNEQLGLAIERSEKSSKAQSEFLSTMSHEIRTPLNAVIGMSNLLMME---SPRPDQKEN 262

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E +  S+  LL LVND+LD   +++G +        L++L+  +      K  E  +  
Sbjct: 263 LEILRFSAGNLLTLVNDVLDFNKIESGKITFENIKFNLHELMQHICGGQIMKAEEKGLNF 322

Query: 670 KVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSV 723
            +  D   K    + D  RL QI   ++SNA+ F+++G+ TV +    D  +     FS+
Sbjct: 323 HLSVDTFLKTHYLIGDPTRLSQIIFNLISNAIKFTNRGAVTVDISCIEDRHNEATIKFSI 382

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I E+    +F+ F   +    R   G GLGL+IV+  ++L GG + +SS     
Sbjct: 383 RDTGIGIAEEKMADIFDPFTQESVTTTRQFGGTGLGLAIVKRLLDLQGGRIGVSSEIGMG 442

Query: 782 TTINC 786
           +    
Sbjct: 443 SEFEV 447


>gi|302662555|ref|XP_003022930.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
 gi|291186903|gb|EFE42312.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
          Length = 2406

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+T +IG ++LLK +K   L+ KQ  YV
Sbjct: 1868 AEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATK---LDPKQDVYV 1924

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     E  +   
Sbjct: 1925 ESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTI 1984

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
               D        + D  RL QIF  +LSN+  F+  GS V ++A  +            V
Sbjct: 1985 EDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIVEEDTPEKIRVTCKV 2043

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I E+    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 2044 ADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGE 2103

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2104 GTTVTFTL 2111


>gi|302555751|ref|ZP_07308093.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302473369|gb|EFL36462.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1424

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 139/312 (44%), Gaps = 21/312 (6%)

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT------DSVRA 551
            D          DE +     L++  +  L+ S   L    T+L   N           +A
Sbjct: 788  DELLGESQRLADELRVRSEELQVRQEE-LQRSNAELEEKATLLATQNRDIEAKNLQIEQA 846

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
             + L ++ + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y  
Sbjct: 847  RQELEDRAKQLSSASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEYAG 906

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I ++ + LL L+NDILDL+ V+AG M +    + L  LL+ V+ +      +  +   +
Sbjct: 907  IIHSAGSDLLQLINDILDLSKVEAGKMDVAPERVPLRRLLDYVEATFRPMTTQKGLTFAI 966

Query: 672  IS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----------AARDNGDF 719
             S  G     V D  RL Q+   +LSNA+ F+ +G   +L              R     
Sbjct: 967  TSAPGAPADLVTDDARLRQVLRNLLSNAVKFTERGGVTLLIEPASDAEVPEPVHRGGPVV 1026

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F V++ G  IPE   +++F  F         +  G GLGLSI     +L GG V++ S+
Sbjct: 1027 AFRVEDTGIGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDST 1086

Query: 778  DEGVTTINCRIP 789
                +T    +P
Sbjct: 1087 PGQGSTFTLYLP 1098


>gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 730

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 99/453 (21%), Positives = 184/453 (40%), Gaps = 48/453 (10%)

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTW----HLPNGQTLHVIVTSNPRGGTIWM 415
           R  +   EQ N +  ++ I ++Y ++E  +       H  +   L V    N        
Sbjct: 9   RRGSDTTEQENAQ-LRKEIDALYAAAEAREQQLLAATHAMDDILLEVESQRN-------- 59

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
                       +   L        D ++  + V G DG++  +N  F       E+ L 
Sbjct: 60  -----ALKKKNKQLLELNAYIRSINDAMNSILVVVGVDGQVSQTNRVFTEDLHWTEDEL- 113

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLP 534
           P  HI ++                  +++ S+   R  L+  + L  S+  L  ++  + 
Sbjct: 114 PQIHIDSLFPKDILSGIREKNGASSGSLVVSYITHRGHLECEMPLHRSNGALTEAVYLVK 173

Query: 535 NAQTMLTF-----------------VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             Q                             ++E AL +       A++ K  F+  +S
Sbjct: 174 GEQFYSHQGKLQGILLTATDISELRQREVALRQSEIALQKAKAEADAANQAKGDFLATMS 233

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  IIGFT L   S+   L  KQ  Y+  +  +S  L +L+ND+LDL+ ++AG 
Sbjct: 234 HEIRTPLNAIIGFTKLCLHSE---LTLKQRDYLNKVDVASHSLSHLINDVLDLSKIEAGK 290

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696
           +++      LN +L+ V+  +   + +  +   +  +  + +  + D  RL Q+   ++ 
Sbjct: 291 LEMERVPFNLNQVLSNVRHVMWFDVAKRGLTFSMGVEPSVPANVIGDPLRLQQVLVNLVG 350

Query: 697 NAMDFSSKGST-VIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           NA+ F+ KG   V +      AR +   IF V + G  + +D    +F+++        R
Sbjct: 351 NAIKFTDKGEVSVTVSRKKSRARKSVTLIFRVCDTGIGMTDDQLSQLFSKYHQAEPSTSR 410

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           R  G GLGL+I +  +NL  G + I+S+    T
Sbjct: 411 RFGGTGLGLTISQKLVNLMKGRIHINSALGQGT 443


>gi|239997215|ref|ZP_04717739.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 702

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 163/384 (42%), Gaps = 20/384 (5%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             NL  Q  +  + N+L+    +  +    G      D    + + A + +      ++ 
Sbjct: 159 ISNLNAQKAILEERNSLL---HQVTNLAGVGTWELNIDTGALIWSGALKRMLHVHGEKVV 215

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LP 534
                 ++          +     F  +I + +D    L+   +      L+    P + 
Sbjct: 216 KP---EDVIKFVVDEDQRNKYVAQFNQMIKTGEDFSYELEVRTDAGETRWLQSRAHPVME 272

Query: 535 NAQTMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           N + +       D  +    +  L +K +    A + ++ F+ ++S+E+R+P+  + G  
Sbjct: 273 NDRCVKVIGATVDITQLHMDKAMLQQKTDMAESALKARSEFLANMSHEIRTPIHGVQGML 332

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           + L +S   SLNS Q ++      S+  LLN+VNDILD + +D+G M    S   L D +
Sbjct: 333 EALISS---SLNSTQLEHATIAMKSADSLLNIVNDILDFSKIDSGNMSFEESPTNLADTI 389

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
            E         HE  I + V + G  G +F+AD+ R+ QI   +L+NA+ F+ +G   + 
Sbjct: 390 EEQVPMFTRLAHEKGIELSVSTKGVEGKTFIADKLRIGQILINLLNNAIKFTKEGKVTVE 449

Query: 711 KAARDNGDFIFSVK----NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
             +   G   F VK    ++G  I E   K +F+ FV   +  QRR  G GLGLSIV   
Sbjct: 450 TKSTRYGKGRFRVKLIVTDSGIGISEQQQKLIFSPFVQAENSTQRRYGGTGLGLSIVSQI 509

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           +  +GG + + S           +
Sbjct: 510 VKHYGGKIEVCSDLGVGARFIVTL 533


>gi|229589257|ref|YP_002871376.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361123|emb|CAY47986.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 1215

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 162/388 (41%), Gaps = 16/388 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            +M   +  +   E   N   +     ++     + V    G ++  N ++  ++  +  
Sbjct: 565 AYMRRQIKHRKMAERALNDQFEFMRALVNETPHPIYVRDRKGLLQTCNDSYLQVFDVKRE 624

Query: 473 RLSPGTHIR--NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            +   + ++      T +  Y+ +D   +         D    ++G    +   +L Y  
Sbjct: 625 DVIGKSALQMSEALETDAEQYH-ADYQRVMTEGNPLILDRTLYIRGHKLTIYHWILPYRD 683

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                   +  ++++++  +    +    E   +A+  K++F+  +S+E+R+P+  +IG 
Sbjct: 684 STGEVQGIIGGWIDISERRQLFDEIRAAKERADEANRAKSTFLATMSHEIRTPMNAVIGM 743

Query: 591 TDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +L LK +  G L+      +E    S+  LL L+ DILD+A +++G + L    + L +
Sbjct: 744 LELTLKRADQGHLD---RPAIEVAYNSAKDLLELIGDILDIARIESGRLSLAPERVNLRE 800

Query: 650 LLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           ++  V +       +  + + +    D      + D  R  Q+ S ++SNA+ F+ +G  
Sbjct: 801 VIESVVRVFDGLARQKTLSLSLEFKPDRDDTEVLIDPLRFKQVLSNLVSNAIKFTERGQV 860

Query: 708 -VILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSI 760
            + ++    +     +    V++ G  I  D    +F  F    + GQ  R G GLGL I
Sbjct: 861 NIKVEVLPTDVAQQVEMKLVVEDTGIGISRDDQLRLFEPFAQADNSGQLARSGAGLGLVI 920

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
             S   + GG +S+SS     T ++  +
Sbjct: 921 CRSLCAMMGGQLSLSSVPMVGTQVHVNL 948



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--NTETEGI 231
           +  ++    +  + L++     + L +     ++ RD+ G +   N SY +  + + E +
Sbjct: 567 MRRQIKHRKMAERALNDQFEFMRALVNETPHPIYVRDRKGLLQTCNDSYLQVFDVKREDV 626

Query: 232 VFQKAIG--ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSFG 287
           + + A+   E+ +   E+                   +    G+  +  + I+   +S G
Sbjct: 627 IGKSALQMSEALETDAEQYHADYQRVMTEGNPLILDRTLYIRGHKLTIYHWILPYRDSTG 686

Query: 288 EA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           E     G  ID+S+   + D++    E       A + F
Sbjct: 687 EVQGIIGGWIDISERRQLFDEIRAAKERADEANRAKSTF 725


>gi|153870405|ref|ZP_01999814.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS]
 gi|152073130|gb|EDN70187.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS]
          Length = 620

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 135/336 (40%), Gaps = 26/336 (7%)

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFA-----AIITSFDDERKSLQGTLELLSDSVLE 527
            L+       +    +  + E +  + F      AI       R+  +   EL     ++
Sbjct: 58  WLASAIDAFELLVDLAHQHEEWEIDEFFTVTIILAIALGIFSWRRWRECEYELTYRKSIQ 117

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             +    +               AE A     E    A++ K+ F+  +S+ELR+PL  I
Sbjct: 118 SQLKIAKDIAETEKKQAEIARKEAEVA----QEKAEIANQAKSEFLASMSHELRTPLNGI 173

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  +L+  K  SLN++Q   +  +  S   LL L+NDILDL+ ++A  M+L+      
Sbjct: 174 LGYAQILRRDK--SLNNQQQYAIHTMQKSGEHLLTLINDILDLSKIEAQKMELHQQDFHF 231

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  L E+   I  +     +  +   +  L  +   D  RL QI   +L NA+ F+ +G 
Sbjct: 232 SHFLTEIVDMIQVRAMPKTLEFQHDFEANLPIAVNGDETRLRQILVNLLGNAVKFTERGK 291

Query: 707 T---VILKAARDNG----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RR 752
               VIL   ++            +  F +++ G  I  +  K++F  F           
Sbjct: 292 VTFKVILIGEKEKKIENRESSPLPNIRFQIEDTGPGIAPEFLKTIFEPFQQVGTERYITE 351

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL + + F+ +    + ++S+    +     +
Sbjct: 352 GTGLGLPLSQKFVEMMDSSLQVTSTVGEGSIFWFEL 387


>gi|119513099|ref|ZP_01632152.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
 gi|119462233|gb|EAW43217.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
          Length = 444

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N  L +A  +K+ F+  +S+ELR+P+  IIGF+ +L   K G L  +Q+  VE I  +  
Sbjct: 164 NFKLLEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGKLTHQQTDMVERILNNGK 223

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+N++LD + ++ G ++L      L  ++N V   + +      + ++V  D +  
Sbjct: 224 NLLMLLNEVLDFSKLEGGRLELKPELFDLTKIINIVVAQMRSLAEAKKLSLRVDIDMQQP 283

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKS 737
               D  R+ QI   +LSNA+ F+  G  + ++           +V++ G  I     K 
Sbjct: 284 LVFNDSVRVRQILINLLSNAIKFTESG-CIWIEVKELPQNQLAIAVRDTGIGIASRDFKH 342

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F        R+  G GLGL+I++S + + GG + + S     +     IP +
Sbjct: 343 IFEAFRQVDQSITRKYPGTGLGLAIIDSLVQMMGGRIILESQLGVGSMFRIEIPRQ 398


>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 778

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 118/246 (47%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + +  L E  +A  +A+  K+ F+ ++S+E+R+P+  IIG T+LL+ +    LN+ Q   
Sbjct: 251 QRDAELREARDAAERANRAKSHFLANMSHEIRTPMNGIIGMTELLQET---DLNAAQRDC 307

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S+  L+ ++NDILD++ ++AG ++L        + +    + +        +  
Sbjct: 308 TRVIQDSAAALMRIINDILDMSRIEAGRLELERLDFDPRESIERTLEPLREIAQRKGLEF 367

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF---IFSVK 724
            +  D +L +    D  RL QI + ++SNA+ F+ +G   V L       D+   + +V+
Sbjct: 368 AIELDPELPARLRGDPGRLRQILTNLVSNAIKFTEQGRVSVTLDCLERTDDWVRFVIAVR 427

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  +  + C  +F RF       R +  G GLGL+I    + L GG + + S     +
Sbjct: 428 DTGIGLSTEECSRLFERFSQADVSTRRRYGGTGLGLAISRQLVELMGGGIDVESKPGLGS 487

Query: 783 TINCRI 788
                +
Sbjct: 488 VFRVEL 493


>gi|150395841|ref|YP_001326308.1| histidine kinase [Sinorhizobium medicae WSM419]
 gi|150027356|gb|ABR59473.1| histidine kinase [Sinorhizobium medicae WSM419]
          Length = 525

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/315 (28%), Positives = 151/315 (47%), Gaps = 14/315 (4%)

Query: 489 RYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSD-----SVLEYSIIPLPNAQT---- 538
              + SD      AI +   D ER ++   LE  S      +     + PL +A+     
Sbjct: 149 EQIHVSDRIAFLRAIDSLRLDSERTAVDIRLERTSADGPQFAHFYCEMTPLRDAEGNLLA 208

Query: 539 -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    +V++  R +     +      A++ K  F+  VS+ELR+PL  I+GF+D+L   
Sbjct: 209 IVAQSRDVSEGARLQAEAAARAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGE 268

Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G L N +Q +YV  I  S T LL++VN +LD++ ++AG  +L      + + +   + 
Sbjct: 269 YFGKLENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLREPFRVAEAIAACEA 328

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            ++ +  E  +R+       +G   AD++ + QI   ++ NA+ F+ +G  V + AAR+ 
Sbjct: 329 MLSHQAREKGVRLASRVTRSVGEINADQRAVQQILINLVGNAIKFTDRGGLVTVDAAREG 388

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V + G  I  D  K +   FV   N +  +  G GLGLS+V+    LHGG VSI
Sbjct: 389 ALLKLTVSDTGIGIAADKLKMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSI 448

Query: 775 SSSDEGVTTINCRIP 789
            S++   T +   IP
Sbjct: 449 RSAEGEGTEVVVSIP 463


>gi|85710244|ref|ZP_01041309.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Erythrobacter sp. NAP1]
 gi|85688954|gb|EAQ28958.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Erythrobacter sp. NAP1]
          Length = 999

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 82/403 (20%), Positives = 154/403 (38%), Gaps = 26/403 (6%)

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           +T  P    +   E +T ++    +    + +  ETI   ++ V     D     ++P+ 
Sbjct: 316 LTGLPIAAILAGRERMTEEL---ARGRGELGLLAETI---TDAVLRLDRDRVCIYASPSV 369

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT----LE 519
             +       L                   +    L           R+ L       + 
Sbjct: 370 EDVMGRPPEDLVGHPIASRGPEDAHARIESALDSLLSGQSDKERITYRRLLDDEEGTPVF 429

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           + +D  +    I       +++  +VT+ V  E  LT        A   K+ F+ ++S+E
Sbjct: 430 IEADCAIVLDPITGERDGVVVSARDVTERVELELLLTRARRHAENAARAKSEFLANMSHE 489

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++GF +L+     G L     ++ E I  S   ++ L+NDILDL+ ++AG + 
Sbjct: 490 IRTPMNGVLGFAELMLQ---GDLEPDNRRHTEMIVESGRSMMLLLNDILDLSKIEAGQIA 546

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG----------KLGSFVADRQRLLQ 689
           ++   + L   L E  Q          +R+   +            +      D  RL Q
Sbjct: 547 IDSQPVDLVSTLAECVQLHLPNAEGKGLRLNFTASDAVKLGGEGARENPWVATDALRLRQ 606

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AH 747
           I   ++ NA+ F+ KGS V ++ +     F   VK+ G  I     +++F  F       
Sbjct: 607 IVLNLIGNAVKFTEKGS-VDVQLSIQAEQFRVDVKDTGIGIGAKRVQTIFAPFTQGENDT 665

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +  G GLGL+I      L GG + + S     +T +  +P+
Sbjct: 666 SRRFGGTGLGLTISRQLAELLGGQIEVCSEVGIGSTFSLILPA 708


>gi|110638476|ref|YP_678685.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110281157|gb|ABG59343.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 1158

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 136/299 (45%), Gaps = 26/299 (8%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           + E +S Q  L   ++ + E + +     +T+       ++   E  L           +
Sbjct: 421 EAELRSQQEELHQSNEELEEKANLLEEQKETLENAKMQIETKAHELELN---------SK 471

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+ ++S+ELR+PL +I+  + LL  +K  SL+ K+ ++ + I  S + LL L+N+I
Sbjct: 472 YKSEFLANMSHELRTPLNSILILSQLLADNKNKSLSEKEVEFAQNICNSGSDLLELINEI 531

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL--GSFVADRQ 685
           LDL+ V++G + L    + L+ + + +         +  I+ KV    KL   +   DRQ
Sbjct: 532 LDLSKVESGKLDLEIEDVSLSKICSSIHAMFDEVAKKKLIQFKVNCSEKLLQTTVHTDRQ 591

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-------------SVKNNGSSIPE 732
           RL QI   +LSNA  F+S    V  K    +   +F             SV + G  IP+
Sbjct: 592 RLEQIIRNLLSNAFKFTSAKGAVTFKIEAASESTVFRNKNLNAHNCLALSVTDTGIGIPQ 651

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F  F       +R   G GLGLSI        GG + + S ++  +T    IP
Sbjct: 652 NKQQIIFEAFQQVDGSTKRKYGGTGLGLSISRELSTALGGEIHVFSEEDKGSTFTLFIP 710


>gi|326477630|gb|EGE01640.1| two-component osmosensing histidine kinase [Trichophyton equinum
           CBS 127.97]
          Length = 1321

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 113/250 (45%), Gaps = 24/250 (9%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 717 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 774

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 775 SLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQVDSSVP 834

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------DNGDF 719
              + D  RL QI   ++ NA+ F+  G  V L+  +                  D   +
Sbjct: 835 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VTLEIKKHVPPPPADGEPEREVCADDEYAY 893

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            FSV++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG V ++S 
Sbjct: 894 EFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSE 953

Query: 778 DEGVTTINCR 787
               +T +  
Sbjct: 954 YGRGSTFHFT 963


>gi|77918268|ref|YP_356083.1| two-component sensor histidine kinase PhoR [Pelobacter carbinolicus
           DSM 2380]
 gi|77544351|gb|ABA87913.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 591

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 155/380 (40%), Gaps = 41/380 (10%)

Query: 424 DLETKYNTLVKV---QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            L+ +  T+++    Q   +  + EGV     D RI   N A   L++            
Sbjct: 237 QLDDRIRTIIRQRNEQQAVLTSMVEGVLALDNDERIIHLNRAAADLFQVSP--------- 287

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS---DSVLEY--SIIPLPN 535
               A   R   E          +      R  ++G + L     D  L+   +++    
Sbjct: 288 ---EAVEGRGIQEVLRKAGLQRFVERALSSRVPVEGEVVLPGTDGDRFLQAHGTVLQEEE 344

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            + +   + + D  R           L + + I+  FV +VS+EL++P+T I G  + L 
Sbjct: 345 GRGIGVLIVLNDVTR-----------LHRLENIRRDFVANVSHELKTPITGIKGSVETLL 393

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI----MKLNYSTIVLNDLL 651
              +        +++  I+  +  L  +++D+LDL+ ++ G     ++L+ + +V   +L
Sbjct: 394 DGAMER-PEDAVRFLRIIAKQAERLNAIIDDLLDLSRIEQGQNDQALELSMAPVVP--VL 450

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                +   K  + +I + +    ++ + + +   L Q    ++ NA+ +S  G TV ++
Sbjct: 451 QAAVHACDMKARDKSIELVLSCAAEISAEI-NPHLLEQAVVNLVDNAIKYSDAGGTVWIE 509

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
           A RD    +  V++ G  I  +    +F RF         +  G GLGLSIV+  +  HG
Sbjct: 510 ARRDARQTVIEVRDQGCGIDNEHLPRLFERFYRVDKARSRRAGGTGLGLSIVKHIVQAHG 569

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G V++ S     +     +P
Sbjct: 570 GRVTVDSEAGKGSVFRIILP 589



 Score = 37.6 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +  T+  Q      +L ++   +   D +  +   NR+  +L+++    +        + 
Sbjct: 241 RIRTIIRQRNEQQAVLTSMVEGVLALDNDERIIHLNRAAADLFQVSPEAVEGR----GIQ 296

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           E LR A          + +  +        T  D +   +G  L          G + + 
Sbjct: 297 EVLRKAGLQRFVERALSSRVPVEGEVVLPGTDGDRFLQAHGTVLQEEEGR--GIGVLIVL 354

Query: 417 ENLTVQVDLETKYN 430
            ++T    LE    
Sbjct: 355 NDVTRLHRLENIRR 368


>gi|120436036|ref|YP_861722.1| two-component system sensor histidine
            kinase/methyl-esterase/transferase hybrid [Gramella
            forsetii KT0803]
 gi|117578186|emb|CAL66655.1| two-component system sensor histidine
            kinase/methyl-esterase/transferase hybrid [Gramella
            forsetii KT0803]
          Length = 1385

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 122/652 (18%), Positives = 254/652 (38%), Gaps = 77/652 (11%)

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-------KKNTETEGIV 232
            E     K+L+   +  + +  +L   +   D++ ++  AN ++       +   E + I 
Sbjct: 761  ELVNNNKRLTVSKNYSQDIVSTLREPLVVLDKSLNVKSANAAFYKKFHLDESEIEGKAIF 820

Query: 233  FQKAIGESRKLFKEEIKKRMIS-SSALEKNFCETVSTLEHGNNKSY----KIVRVLNSFG 287
              +  G +    K  +++ +   SS  +         L  G         +I+R     G
Sbjct: 821  DLENKGWNIPELKNLLREILPKHSSFYDHEITHDFPGL--GQRTMLLNGREIIR--EEGG 876

Query: 288  EAGIAI---DVSKEITVNDQLTHT---YEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWE 340
            E  I +   D++ +  +   L  +   +++L  +++  I I +    ++F N  +     
Sbjct: 877  EKLILLVFGDITDKRLIEKNLEKSEIKFKLLVDSISQLIWISNAEGNIEFFNPQWQHYTG 936

Query: 341  IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQ 398
            I+        S + + + +      P+  + K +K+       +    T +    L  G 
Sbjct: 937  IN--------SGESIKDGMWEEAIHPD--DLKEFKDQFNKCIDTGKSFTKETRLELKEGN 986

Query: 399  TLHVIVTS----NPRGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
                +  +    NP G  +     F N+ VQ   E       +   +  + + + +    
Sbjct: 987  YNWYLAKAMPYYNPDGEIMKWFGSFTNIEVQKQAEATLRKSEEHFRQLAELIPDKITKAN 1046

Query: 452  PDGRIKLSNPAFRSLWKT-----EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
             +G +   N ++ +         +E  L+   H +       ++    D  D F   I  
Sbjct: 1047 AEGEVTYYNQSWLNYTGLTRDELKETSLNGFLHPKEKWEIKKKWKKSVDSGDAFEMEIQI 1106

Query: 507  FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
             +   KS      L          IP+ + +  + F   T         T + + L++ +
Sbjct: 1107 LN---KSGDYCWHL-------VRSIPVKDEKEQIKFWIGT---------TTEIQKLKEEE 1147

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKT-----SKLGSLNSKQSQYVEYISASSTILL 621
            + K  F++ VS+EL++P+T+I G+T LL       +++   +      +E I +  + L 
Sbjct: 1148 KRKEDFLKMVSHELKTPVTSIKGYTQLLLDMLMASTEINLDSIPLKPSLERIDSQVSRLT 1207

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             L+ +ILDL+ ++   M L+     LNDL++E  Q I     E+NI I      +     
Sbjct: 1208 RLIAEILDLSRIEGDKMVLHKKAFNLNDLIDESIQDIKYSSRESNIDIDHEGSFE---VC 1264

Query: 682  ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFN 740
             D  R+ Q+    ++NA+ +S     + ++     N     SVK++G  I +   K++F 
Sbjct: 1265 GDMDRIGQVLINFITNAIKYSPDDKNIEVRVFESGNNKVSVSVKDHGIGIDQKHLKNIFK 1324

Query: 741  RFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF   + +      G G+GL + +  I  H G+V++ S+    +     IP+
Sbjct: 1325 RFYRVSQKNDETYSGFGIGLFLAKEIIERHRGNVAVKSNKGEGSEFIFTIPT 1376



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 14/184 (7%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
            ++ +  L  K L      FK+L DS+  L+W  +  G+I + N  ++  T        K 
Sbjct: 886  DITDKRLIEKNLEKSEIKFKLLVDSISQLIWISNAEGNIEFFNPQWQHYTGINSGESIKD 945

Query: 237  IGESRKLFKE---EIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIVRVL--NSFGEA- 289
                  +  +   E K +        K+F  ET   L+ GN   Y    +   N  GE  
Sbjct: 946  GMWEEAIHPDDLKEFKDQFNKCIDTGKSFTKETRLELKEGNYNWYLAKAMPYYNPDGEIM 1005

Query: 290  ---GIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEID 342
               G   ++  +      L  + E    L       I   +    + ++N+S++    + 
Sbjct: 1006 KWFGSFTNIEVQKQAEATLRKSEEHFRQLAELIPDKITKANAEGEVTYYNQSWLNYTGLT 1065

Query: 343  LAFL 346
               L
Sbjct: 1066 RDEL 1069


>gi|158339377|ref|YP_001520554.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158309618|gb|ABW31235.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 904

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 127/267 (47%), Gaps = 30/267 (11%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L E   A   A++ K+ F+ ++S+ELR+PL  I+GF+ LL   +  +L  +Q Q +  
Sbjct: 389 KDLREAKNAAETANQAKSVFLANMSHELRTPLNAILGFSQLLSRDQ--NLTLEQKQTLRT 446

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I++S   LLNL+ND+L+++ ++AG + LN     L  LL  + +  + K     +R+   
Sbjct: 447 INSSGAHLLNLINDVLEMSKIEAGKVDLNQGQFDLRALLESLFEMFSLKAEARQLRLDFE 506

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST------------------------ 707
               L    V+D  RL Q+   +L NA+ F+  GS                         
Sbjct: 507 LPPDLPQYIVSDASRLRQVLINVLGNAIKFTEVGSVTLAISTLPLQSVSEQLSDISSENE 566

Query: 708 -VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESF 764
            + L+   +N   +  +V + G  I +D   ++FN F    A R    G GLGL+I   F
Sbjct: 567 AITLEPTLENDTLLQITVTDTGVGIADDELPNLFNLFTQACAGRQSFEGTGLGLAISRQF 626

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + L  G + +SS +   T +  +IP K
Sbjct: 627 VQLMQGDIHLSSKEGQGTKVQIQIPVK 653


>gi|228906741|ref|ZP_04070613.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
 gi|228852918|gb|EEM97700.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
          Length = 896

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 141/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA--------ARDNG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS  +    ++         +    
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFNPIETNNLSHDMQSISKE 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNLGEGSTFTVYIP 731


>gi|104782259|ref|YP_608757.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95111246|emb|CAK15966.1| putative sensor histidine kinase/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 1156

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ +          G + +S  + R   + +E           +     
Sbjct: 365 LRPLQERDLEFLERIG---------GNLGISIESARYRQRLQEVLAETQQLNEELQVQQE 415

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + ++       ++ Q  LE  ++ + E         +T        + 
Sbjct: 416 ELKTANEELEEQSRVLKESQAHLETQQAELEQTNEQLAE---------RTEALDRKNNEL 466

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+  Q +
Sbjct: 467 NQAQVELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLSENAEGNLSDDQVK 526

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD+A V+AG +++   +  L  L   ++        +  + 
Sbjct: 527 FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPESTSLERLAEGLQGMFQPLAQDKGLD 586

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +V  +  L      DRQRL Q+   +LSNA+ F+  G   +  + +     +F+V++ G
Sbjct: 587 FEVRLEAPLPPAVHTDRQRLEQVLKNLLSNAIKFTEHGKVSLGISHQAGLGIVFAVRDTG 646

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  +++F  F  V      +  G GLGLSI     +L GG +S+ SS    +  +
Sbjct: 647 IGIAADQQQAIFGAFHQVDGTSNRKYGGTGLGLSISRDLAHLLGGQISVDSSPGQGSVFS 706

Query: 786 CRIP 789
             +P
Sbjct: 707 LILP 710


>gi|152988773|ref|YP_001347467.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
 gi|150963931|gb|ABR85956.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
          Length = 691

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 152/373 (40%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRN 482
             E   +  + ++   +D +   V++   DGR+   N  +  SL  T E          +
Sbjct: 52  RTEADLSDRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLDSLRMTREQARGTLLTDSD 111

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                           +      SF D    + G L  +   V  Y          M  +
Sbjct: 112 WVEGGKARLMHRQCLAVARGGTASFTDMTVRIGGQLLEIHHWVTPYRDRQGRVLGLMNGW 171

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+        
Sbjct: 172 IDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRLTPGQ 231

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             + S  +E    ++  L  L+ DILD+A +++G + L    + L +++  V++      
Sbjct: 232 PERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLILTPERVRLREVVESVRRMFEGLA 289

Query: 663 HENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            +  +R+ V   D      + D  R  Q+ S ++SNA+ F+ +G  V ++    N D   
Sbjct: 290 RQKGLRLGVELGDTPGCDVLIDPLRFKQVLSNLVSNAIKFTEQG-QVTIRLQEKNLDEGR 348

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
                +V++ G  I       +F  F+  A     + G GLGL+I    ++L GG + + 
Sbjct: 349 AVVRLAVEDTGIGIAPADQARLFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGDIEMH 408

Query: 776 SSDEGVTTINCRI 788
           S     T ++  +
Sbjct: 409 SEPGKGTLVSLDL 421



 Score = 42.2 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 10/170 (5%)

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
            +   +     +   L         LS+ +++ + L D + + V  R   G +L  N +Y
Sbjct: 32  ASVACLAWNTVLQLRLRRWQRTEADLSDRLALKQALVDGIPYPVSIRTLDGRLLACNRNY 91

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNK---S 276
             +        +  +       +    + M     + A       T  T+  G       
Sbjct: 92  LDSLRMTREQARGTLLTDSDWVEGGKARLMHRQCLAVARGGTASFTDMTVRIGGQLLEIH 151

Query: 277 YKIVRVLNSFGEAGIA----IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           + +    +  G         ID+++   +  QL            A ++F
Sbjct: 152 HWVTPYRDRQGRVLGLMNGWIDITERERLARQLREAMRQADEANRAKSVF 201


>gi|78355304|ref|YP_386753.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78217709|gb|ABB37058.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 847

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 106/518 (20%), Positives = 204/518 (39%), Gaps = 60/518 (11%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE----------LWEIDLAF------ 345
            D +  T  +  N+   +   D      F NR+  E          L   D+ F      
Sbjct: 197 EDGINLTRAMADNMIDMLWAKDTKGRYLFANRAICEKLLCCDGIDPLGRDDIYFARRQRA 256

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L    +  EL         L ++         + + Y + E  K   + P G  +     
Sbjct: 257 LGWQHTFGELCLNSDDIVLLSQKPGRFVEDGLVQNKYLALEVQKSPLYDPRGVLI----- 311

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG------PDGRIKLS 459
                GT+    ++T Q + E          G  +   S+ +  +         G++   
Sbjct: 312 -----GTVGTGRDITRQKEAEEALRRSEHRFGMVLRATSDIIWAYDIAKDTMTCGKMDSP 366

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           +P FR++ +           +++I    SR++ E          +T+ D     L     
Sbjct: 367 DP-FRAMQE-CHCLPVHHEELKDIKDHVSRFFREGGDNLQHEFNLTAHDGNTIWL----- 419

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           L    V+E+          +L   + TD       L     A   A + K++F+  +S+E
Sbjct: 420 LSRGRVMEFD----EKGAPLLAVGSHTDIT----ELKTAQVAAEAAAKAKSAFLATMSHE 471

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  ++G   +L        + K  +       S   LL ++NDILD +T+DAG   
Sbjct: 472 IRTPLNGVLGMLQILGNEI---TDPKPLRLTRTALDSGRKLLAIINDILDFSTIDAGAAP 528

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNA 698
           L+++ + + + +N V  + + ++ +  + +  + D  +    V D  R+ QI   ++ NA
Sbjct: 529 LDHAPLRIRETVNSVLANFSEEVRQKGLTLTAVVDRAVPDVLVGDESRIRQILFNLVGNA 588

Query: 699 MDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
           + F+ +GS V +        A +    + +V++ G  +  +M   +F+ F       R +
Sbjct: 589 VKFTREGS-VRVDVLLLTAPADEEARLLVTVEDTGIGMEAEMLPRIFDPFFQVDGTYRRR 647

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +G GLGL IV S +++  G++S+ S+    TTI C +
Sbjct: 648 YQGTGLGLGIVRSLVSMMNGNISVESTPGVGTTICCSL 685



 Score = 37.6 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 80/275 (29%), Gaps = 51/275 (18%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK------------NTET 228
             +      + I++ + + D++  ++W +D  G  L+AN +  +              + 
Sbjct: 189 LPVDGVPCEDGINLTRAMADNMIDMLWAKDTKGRYLFANRAICEKLLCCDGIDPLGRDDI 248

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN---- 284
                Q+A+G  +  F E            +K        L      + ++ +       
Sbjct: 249 YFARRQRALGW-QHTFGELCLNSDDIVLLSQKPGRFVEDGLVQNKYLALEVQKSPLYDPR 307

Query: 285 --SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
               G  G   D++++    + L  +          + +   +  +          W  D
Sbjct: 308 GVLIGTVGTGRDITRQKEAEEALRRSEHRF-----GMVLRATSDII----------WAYD 352

Query: 343 LA---FLATNPSNDELLEFLRSANKLP----EQLNWKTWKENIFSVYKSSETHKD----- 390
           +A          + +    ++  + LP    E  + K      F     +  H+      
Sbjct: 353 IAKDTMTCGKMDSPDPFRAMQECHCLPVHHEELKDIKDHVSRFFREGGDNLQHEFNLTAH 412

Query: 391 ----TWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
                W L  G+ +       P    +    ++T 
Sbjct: 413 DGNTIWLLSRGRVMEFDEKGAPLLA-VGSHTDITE 446


>gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli H736]
          Length = 708

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 158/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 110 RLEEHEQFNRKIVASAPVGICILRTADGVNILSN----ELAHTYLNMLTHEDRQRLTQII 165

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I            V+V+
Sbjct: 166 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI---------CVLVDVS 206

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 207 SRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 263

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 264 DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 323

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 324 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVRADGDYLSIRVRD 382

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 383 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 442

Query: 784 INCRIPS 790
              RIP 
Sbjct: 443 FTVRIPL 449


>gi|262374290|ref|ZP_06067566.1| sensor protein gacS [Acinetobacter junii SH205]
 gi|262310848|gb|EEY91936.1| sensor protein gacS [Acinetobacter junii SH205]
          Length = 936

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 122/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  
Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRK 333

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 334 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYAE 393

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    V D  R  QI + ++SNA+ F+  G  +I++   ++ +       FSV+++G  
Sbjct: 394 NIPQHVVGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEDDEIGQCLLHFSVQDSGIG 452

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  GH+    +      E  +
Sbjct: 453 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGHIGFEDNQERAPTEKGS 512

Query: 783 TINCR 787
           T    
Sbjct: 513 TFWFT 517


>gi|149922270|ref|ZP_01910707.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149816903|gb|EDM76389.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 590

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 105/489 (21%), Positives = 185/489 (37%), Gaps = 38/489 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND-ELLEFLRSANKLPEQL 369
           +L  +    A+ D    +   NR+++   + D              +  L       E  
Sbjct: 5   LLEAMPNRAALLDAEGLVIAANRNWLSPPDCDPPDAPPRRPIGSHYVAELSPRGPGDEVG 64

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSNPRGGTIWMFENLTVQVDLE 426
           ++      +    +S   ++ +   P G+    + V   +  +   +   E++T +   +
Sbjct: 65  SFVAGVLAVLDGRRSRFEYELSRDGPRGRCWYAVQVSGVAGTQRRVLVTEEDVTSRRRAQ 124

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +         I      +    PDG +                 L  G     +  +
Sbjct: 125 EALSASENQLRTIITGAPIVLFSVDPDGIL----------------SLFDGLGASGLGVS 168

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV----LEYSIIPLPNAQTMLTF 542
             R    S  +++FA +       RK++ G   + S  +     E    P       L  
Sbjct: 169 PERVVGRS-VFEVFAHVPQMLTAVRKAMAGETAVTSAPIGRMTWELRCSPAVAGDERLEG 227

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V    +   ERA         + + +KN FV  VS+ELR+PLT+I G   LL+    G L
Sbjct: 228 VVGIATDITERA---------RIERLKNEFVSIVSHELRTPLTSIRGSLGLLEGGVAGEL 278

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +    V    +++  L+ LVNDILDL  ++ G ++L    +    L  +    I+   
Sbjct: 279 DIRIKGLVRIALSNTERLIRLVNDILDLDKIETGKLELRSEVLDPIRLTEDAIAEISGYA 338

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
            E+ + +    +        DR RLLQ+   +LSNA+ FS  G TV ++      G   F
Sbjct: 339 TESGVSLVREFESA-CDVRGDRDRLLQVLINLLSNAIKFSKPGDTVTVEIEEISPGTVRF 397

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV + G  I ED    +F +F        R   G GLGL+I ++ I+ HGG + + S   
Sbjct: 398 SVCDEGPGIAEDQMPKLFRKFSQLDESATRSAGGSGLGLAISKAIIDAHGGGIGVESQLG 457

Query: 780 GVTTINCRI 788
             +  +  +
Sbjct: 458 VGSRFHFAL 466



 Score = 38.4 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 75/269 (27%), Gaps = 53/269 (19%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           L +++       D  G ++ AN ++    + +                E   +       
Sbjct: 5   LLEAMPNRAALLDAEGLVIAANRNWLSPPDCDPPDAPPRRPIGSHYVAELSPR---GPGD 61

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVL-NSFGEAGIAI-----------------DVSKEI 299
              +F   V  +  G    ++         G    A+                 DV+   
Sbjct: 62  EVGSFVAGVLAVLDGRRSRFEYELSRDGPRGRCWYAVQVSGVAGTQRRVLVTEEDVTSRR 121

Query: 300 TVNDQLTHTYEILHNLTVA--IAIF--DQNRYLQFHNRSFVELWEIDLAFLATNPSN--- 352
              + L+ +   L  +     I +F  D +  L   +        +  + L  +P     
Sbjct: 122 RAQEALSASENQLRTIITGAPIVLFSVDPDGILSLFD-------GLGASGLGVSPERVVG 174

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVIVTSNPRG- 410
             + E      ++            + +V K+          P G+ T  +  +    G 
Sbjct: 175 RSVFEVFAHVPQM------------LTAVRKAMAGETAVTSAPIGRMTWELRCSPAVAGD 222

Query: 411 ----GTIWMFENLTVQVDLETKYNTLVKV 435
               G + +  ++T +  +E   N  V +
Sbjct: 223 ERLEGVVGIATDITERARIERLKNEFVSI 251


>gi|154706014|ref|YP_001424051.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|154355300|gb|ABS76762.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 630

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 185/428 (43%), Gaps = 37/428 (8%)

Query: 387 THKDTWHLP--------NGQTLHVIVTSNP----RGGTIWMFENLTVQVDLETKYNTLVK 434
             ++ W LP        + + +   V S P    + G +   + ++  V+    +     
Sbjct: 69  AVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYMLTGQVISKSVNASQIF----- 123

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                + ++ + +     +      N  F  L   E      G    ++    S+  N  
Sbjct: 124 -LENILYNIPQYILWKDRNFVYLGCNHNFAKLVGFETPESIIGKTDFDL--WRSQGANSI 180

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSV 549
              D+         D  +SL   L    + V   S +PL + +      ++   ++T+  
Sbjct: 181 RPTDVEVLEGKQLVDVEQSLS--LPNGKEGVFLISKVPLRDERNEIIGILVVGTDITERK 238

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ L E       +D  K+ F+ ++S++LR+P+  I+G   +    +      KQ   
Sbjct: 239 QNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEH---TKKQEPL 295

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +SAS+ +LL LV DILD A ++ G ++L YST  L  L+  + ++ + +  +  I+I
Sbjct: 296 INDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQQKQIKI 355

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKN 725
            +  D  L  S V++   + +IF  ++ NA+ F+ KG  + +    +          VK+
Sbjct: 356 NIYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKG-QIDVTVNLEGNKPAMLKILVKD 414

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D   ++F+RF      +  +  G+GLGLSI++  ++  GG V +SS +   +T
Sbjct: 415 TGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIENEGST 474

Query: 784 INCRIPSK 791
               IP +
Sbjct: 475 FTLTIPCE 482


>gi|115375839|ref|ZP_01463090.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820280|ref|YP_003952638.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367149|gb|EAU66133.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393352|gb|ADO70811.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1171

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 140/346 (40%), Gaps = 22/346 (6%)

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +     + L     +        R  ++    +          +E ++ Q  L + ++ +
Sbjct: 364 IHAVHPSDLEFLQRVSESIGIAVRSSHDRTRLEQLLEETQRQTEELQAQQEELRVSNEEI 423

Query: 526 LEYSIIPLP-------------------NAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            E S +                        QT L      D   A+  L +K   L +  
Sbjct: 424 EEQSRVLKESQVRMEAQQAELEQTNVQLEEQTQLLAKQKDDLTNAQGTLAQKASELERTS 483

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+ ++S+ELR+PL + +    LL  +K G+L S+Q ++ + IS++   LL L+ND
Sbjct: 484 RYKSEFLANMSHELRTPLNSSLILAKLLADNKEGNLTSEQVKFAQTISSAGNDLLALIND 543

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685
           ILDL+ ++AG +++    ++L   +  + ++      E  +   +     +      D Q
Sbjct: 544 ILDLSRIEAGKVEVQPEVVILRRTVEALLRTFQPVAQEKKLGFSISVQEDVAEKLETDPQ 603

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R  QI   +LSNA  F+ KG   +       G   F+V++ G  I     + +F  F   
Sbjct: 604 RFGQILRNLLSNAFKFTEKGEVSLRVFPVGPGKVGFAVRDTGIGIAPHQQELIFEAFRQA 663

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +  G GLGLSI      L GG V++ S     +T    +P
Sbjct: 664 DGSTHRKYGGSGLGLSISRDLARLLGGEVTVQSQPGEGSTFTLTLP 709


>gi|53712032|ref|YP_098024.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
 gi|52214897|dbj|BAD47490.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
          Length = 389

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVR---AERALTEKNEALR 563
           E +      E      LE   IP     N + +    ++    R    E  LT   E   
Sbjct: 102 ELRFWAKKREGFVLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAE 161

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K++ + ++++E+R+PL  I+GF  LL    +     +Q +Y+  I +++  LL L
Sbjct: 162 EANRLKSALIANMNHEIRTPLNAIVGFASLLS---IIDDEKEQQEYIGLIQSNTEHLLRL 218

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND++DL+ +++G+M +  S +VL+ L+ E++ +   K   NN+ +    +        D
Sbjct: 219 MNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNAHIYTD 278

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R RL+QI   +L NA+ F++KG+       ++NG   F V + G  IP D  + +F RFV
Sbjct: 279 RDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFV 338

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 Q  G+GLGLS+ +  I    G + + S     +T    IP
Sbjct: 339 KLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|325124545|gb|ADY84068.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 935

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +LN++Q+ Y++ I  
Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNLYLQTIRK 334

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 335 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYAD 394

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    + D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 395 NIPQQVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIG 453

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGS 513

Query: 783 TINCR 787
           T    
Sbjct: 514 TFWFT 518


>gi|312960964|ref|ZP_07775469.1| two-component sensor/regulator [Pseudomonas fluorescens WH6]
 gi|311284622|gb|EFQ63198.1| two-component sensor/regulator [Pseudomonas fluorescens WH6]
          Length = 470

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 102/416 (24%), Positives = 165/416 (39%), Gaps = 52/416 (12%)

Query: 427 TKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +  TL+K   +Q    +            G I++ N     +       +       +I
Sbjct: 42  KRQRTLLKAGALQDAIFNSAYFSSIATDEKGVIQIFNVGAERMLGYAAADVVNRITPADI 101

Query: 484 ---------AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIP 532
                    AA  S   +        A +  +        + T      S L    S+  
Sbjct: 102 SDPAELIIRAAALSLELDTPITPGFEALVFKASRGIEDIYELTYIRQDGSRLSAMVSVTA 161

Query: 533 LPNAQTMLTFV------------NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L N   M+                     R ERAL EKN  L  A  +K+ F+  +S+EL
Sbjct: 162 LRNRSDMIIGYLLIGTDNTARKQEEAQRKRFERALEEKNLELEHASRMKSEFLATMSHEL 221

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  +IGF++ LK   +G+++  Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L
Sbjct: 222 RTPLNAVIGFSEALKDGLVGAMSDTQREYIGDIFTSGQHLLSLINDILDLSKVEAGMMDL 281

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               + L  LL      +  K  +  I++K+ S G LG+ + D+++  QI   +L+NA+ 
Sbjct: 282 ELEPVELAGLLANSLLIVREKAAQQRIQLKLDSQGDLGTLMLDQRKTKQIVYNLLANAVK 341

Query: 701 FSSKGSTVILKAARDNGD------------------------FIFSVKNNGSSIPEDMCK 736
           FS+    V L     + D                           SV + G  I  D   
Sbjct: 342 FSAHAGFVHLAVCEVDRDQVGLVPGDWPVYGFALQPSVHQRFLELSVSDTGIGIAADDMG 401

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F  F         +  G GLGL++V+   +LHGG V+++S +         +P 
Sbjct: 402 KLFKAFSQIDSSLARKFEGTGLGLAMVKQLTDLHGGSVAVASREGLGARFVVWLPL 457


>gi|238917554|ref|YP_002931071.1| two-component system, unclassified family, sensor kinase
           [Eubacterium eligens ATCC 27750]
 gi|238872914|gb|ACR72624.1| two-component system, unclassified family, sensor kinase
           [Eubacterium eligens ATCC 27750]
          Length = 854

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 15/249 (6%)

Query: 552 ERALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           E+ +    E      E     K+ F+ ++S+++R+P+  I+GF+ LL   +      K  
Sbjct: 450 EQQIRGHMEDALHTAEAANLAKSQFLANMSHDIRTPMNAIVGFSQLLLRHEKNP--DKVK 507

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y E I  SS  LLNL+ND+LD++ +++G   LN S + + D++ E+   I  +  +   
Sbjct: 508 KYAEKIVISSQHLLNLINDVLDMSKIESGNTTLNLSDVNIADIVQEIDNIIRPQAKQKKQ 567

Query: 668 RIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFI 720
            + + SD  + G    D+ RL QI   ILSNA+ ++ +   +  +    N        + 
Sbjct: 568 TLIISSDNVEYGWIKTDKLRLNQILLNILSNAVKYTPEYGMITFEIRGMNHTGSQFAKYK 627

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F + +NG  + +   K +F  F    +      +G GLG+ I ++ I+L GG + + S  
Sbjct: 628 FKISDNGIGMSDGYIKEIFKPFTREDNNVTDNVQGTGLGMPITKNLIDLMGGTIKVKSKK 687

Query: 779 EGVTTINCR 787
              +T    
Sbjct: 688 GEGSTFEVT 696


>gi|228913678|ref|ZP_04077305.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845966|gb|EEM90990.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 896

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|320156372|ref|YP_004188751.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319931684|gb|ADV86548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 569

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 132/270 (48%), Gaps = 12/270 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++E ++I + N + +   V +       R L    E   +A+  K+ F+  +S+ELR+PL
Sbjct: 171 LIERAVIDIENKEKLQRIVELRT-----RELALAREESERANRAKSEFLAMMSHELRTPL 225

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +++G  D+LK S    +++     + ++ +S+ +LL +++DILDL+ +++G   L+   
Sbjct: 226 NSVLGMLDVLKQS---DMSAGHINLLSHMESSAGLLLAIISDILDLSKIESGEFSLSPQW 282

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           I +ND +  V            + I++  +      +  D  RL Q+   ++ NA+ F+ 
Sbjct: 283 ININDTVTFVVSQQQLVAATKGLNIELSIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQ 342

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
           +G  + ++   +N +   SV + G  I +D   S+F  F        R   G GLGL+I 
Sbjct: 343 QG-QIDIRVNLENDELSISVIDTGIGIEKDKISSLFTAFKQADSSITRKFGGTGLGLAIT 401

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  + L  G V +SS     +T   +IP K
Sbjct: 402 KHLVELMSGTVRVSSQFGKGSTFVVKIPVK 431


>gi|288942028|ref|YP_003444268.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897400|gb|ADC63236.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 867

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 149/375 (39%), Gaps = 12/375 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            ++  E               H S+ + + G D R + ++ + + +       L   + +
Sbjct: 353 ARLKTEHAVQASEIRFAALARHSSDLIILTGTDLRARFASDSIQRVLGHTPRDLMRVSLL 412

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +        +      L A  IT   +   +   GT   +       S  P      +
Sbjct: 413 DYLQPEDRVRASRFIARVLAAPDITLVTEWPMRHADGTWRDIEILATNLSHNPAV-GGLV 471

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           L   +VT+  R +  L +   A   A+  K  F+ ++S+E+R+P+  +IG +        
Sbjct: 472 LNGRDVTERKRHQHELEQARAAAESANRAKGEFLANMSHEIRTPMHAVIGLS---SLLLD 528

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L  +Q  Y+E I  + T LL ++NDILD + ++AG M+L    + L ++L+       
Sbjct: 529 STLLPQQRDYLERIHLAGTALLGVLNDILDYSKIEAGRMRLESIPLRLQEVLDTTHALFE 588

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +  +  + ++     ++      D  RLLQ+ + ++ NA+ F+  G   +    ++  +
Sbjct: 589 IQAEKKPLSLEFELAPEVPERLQGDPLRLLQVLNNLVGNALKFTHTGGVWVGVTCQEQTE 648

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                  SV++ G  +     + +F  F        R   G GLGLSI +    L GG +
Sbjct: 649 TSVLIKISVRDTGIGLTPAQLERLFGVFHQADASTTRQYGGTGLGLSICKRLTELMGGEI 708

Query: 773 SISSSDEGVTTINCR 787
            + S     +T    
Sbjct: 709 GVESVAGQGSTFWFT 723


>gi|241665866|ref|YP_002984225.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240867893|gb|ACS65553.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 631

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 154/379 (40%), Gaps = 26/379 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           T+     +     +      ++++  D      N    +        L P   +      
Sbjct: 106 TQQRLSQQRLLAALQASP--ISLYDVD------NTMHFTWVHNPVFGLQPEQLLGRTVRE 157

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLT 541
                  S   +    +I +    R             V +  ++PL +           
Sbjct: 158 VFGRRAASRLTEAGQRVIATGTPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNA 217

Query: 542 FVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            +++++  +AE        A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL
Sbjct: 218 VIDISERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLL 277

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                    +   + +E I  S+   ++L++D+LD++ + +G + L    + L D+L   
Sbjct: 278 NMRAYD--EAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERA 335

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +++I     + NI I+      +     D  RL Q+F  +L+NA+ F+ +G  + L    
Sbjct: 336 RETIEPMARQKNITIETEF-LPVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHP 394

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                + +V++ G  I       +F+RF        RR  G+GLGL+I +  + LH G +
Sbjct: 395 APEGVVATVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 454

Query: 773 SISSSD-EGVTTINCRIPS 790
           + +SS  +  TT+   +P 
Sbjct: 455 TAASSGADRGTTMAVSLPL 473


>gi|256389376|ref|YP_003110940.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
           44928]
 gi|256355602|gb|ACU69099.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
           44928]
          Length = 1119

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 142/308 (46%), Gaps = 20/308 (6%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A  + +  DE +  Q  L   +  + E +   L   Q     V  ++  +A + L E+ 
Sbjct: 614 LADELKARTDELQMQQKELRRSNAELEEKA--ELLARQNQDIEVKNSEIEQARQELEERA 671

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             L  +   K+ F+ ++S+ELR+PL +++    L+  +  G+L  +Q +Y E I  + + 
Sbjct: 672 NQLTMSSRYKSEFLANMSHELRTPLNSLLILARLMSDNAEGNLTERQVEYAETIHGAGSD 731

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
           LL L+NDILDL+ ++AG M +  + I ++ L++ V+ +   +  +  + ++V ++     
Sbjct: 732 LLQLINDILDLSKIEAGRMDVQPARIAVSQLVDYVEATFRPQTEQKGLELRVRVAPSVPA 791

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST---------VILKAARDNGDFI------FSV 723
               D QRL Q+   +LSN++ F+  G           V+L    D+ +        F+V
Sbjct: 792 HLFTDEQRLQQVLRNLLSNSVKFTETGHVELVVDTVGDVVLGGPEDSNEVTLEPAVSFAV 851

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I +D  ++VF  F         +  G GLGLSI      L GG +   S     
Sbjct: 852 SDTGIGIVDDKIQTVFEAFQQEDGTTSRRYGGTGLGLSISREIAKLLGGGIRAESQRGRG 911

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 912 STFTLFLP 919


>gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 735

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 144 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 200

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 201 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 260

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +    + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 261 KNDVPENVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 320

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 321 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 380

Query: 787 RI 788
            I
Sbjct: 381 HI 382


>gi|169830174|ref|YP_001700332.1| two-component sensor histidine kinase [Lysinibacillus sphaericus
           C3-41]
 gi|168994662|gb|ACA42202.1| two-component sensor histidine kinase [Lysinibacillus sphaericus
           C3-41]
          Length = 566

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 149/395 (37%), Gaps = 27/395 (6%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           + + V  T +  G     F +LT ++ + ++  +   +     + ++++GV      GRI
Sbjct: 183 RKVRVYGT-DEIGQLAVTFNHLTNRLQEAQSTTDAERRKLDSVLSNMTDGVIATDRKGRI 241

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N     L       ++ G  I ++     + Y+  D   +  AI  +F         
Sbjct: 242 ILINDPALQLLHIS-RDITLGRPIASVLGI-DQEYSFEDLIHMSDAINLNFSTSDAPYIL 299

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                      +S+I             + D    E           K +  +  FV +V
Sbjct: 300 RAN--------FSVIQKETGFINGLITVLHDITEQE-----------KIEMDRREFVSNV 340

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT +  + + L        N     ++      +  ++ LVND+L L+ +D+ 
Sbjct: 341 SHELRTPLTTMRSYLEALADGAWKDENI-APTFLNVTQTETERMIRLVNDLLQLSRMDSS 399

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +LN   ++ N   N +         +  ++   +          D  ++ Q+   I+S
Sbjct: 400 DYELNKDIVLFNSFFNRIIDRFEMSKSDK-VQFARLFPETSFYVEIDTDKVTQVIDNIIS 458

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ +S  G  +              + ++G  IP++    +F+RF        R   G 
Sbjct: 459 NAIKYSPDGGNIRFGFTGQGDMLKVMISDDGMGIPKENVGRIFDRFYRVDRARARSMGGT 518

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+I    I  HGG +   S +   TTI   +P
Sbjct: 519 GLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 553



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 20/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             + T + +      +L N+T  +   D+   +   N   ++L  I        P    L
Sbjct: 209 EAQSTTDAERRKLDSVLSNMTDGVIATDRKGRIILINDPALQLLHISRDITLGRPIASVL 268

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              +       + ++        FS   +    +  + +   +T  +        G I +
Sbjct: 269 G--IDQEYSFEDLIHMSDAINLNFSTSDAPYILRANFSVIQKETGFI-------NGLITV 319

Query: 416 FENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
             ++T Q  +E            +  T +      ++ L++G
Sbjct: 320 LHDITEQEKIEMDRREFVSNVSHELRTPLTTMRSYLEALADG 361


>gi|150009333|ref|YP_001304076.1| putative signal transduction histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937757|gb|ABR44454.1| putative signal transduction histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 942

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    +    A+  K+ F+  +S+E+R+P+  I+G + +   +       K    +E + 
Sbjct: 542 IQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQNI--DNTDKIKDCLEKVI 599

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL L+ND+LD++ +++G ++L + +      L + +     +     I  + I  
Sbjct: 600 MSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFENLYGEQAKSKGISYETILA 659

Query: 675 GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
             L    + D  RL Q+ S +LSNA+ F+     + L+ ++   D       F V + G 
Sbjct: 660 SDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKTGEDQENVYLRFEVIDTGC 719

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F  F         +  G GLGLSIV+ F  L GG + ++S     +T   
Sbjct: 720 GIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLMGGGIHVTSVQGSGSTFTV 779

Query: 787 RIP 789
            +P
Sbjct: 780 DLP 782


>gi|148977411|ref|ZP_01814011.1| sensor histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145963363|gb|EDK28628.1| sensor histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 827

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 125/240 (52%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + +   K +F+  +S+E+R+P+  ++G   +L  +    LN++Q ++++ + 
Sbjct: 328 LEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLNAEQEKHLKSLY 384

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G + L+ +   L+ ++  +     T   E  ++ KV S+
Sbjct: 385 ESGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVYYTLSSEKGLQFKVYSE 444

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSI 730
              G +  +D+ RL QI   +L+NA+ F+S+G   V LK   +  D      V++ G  I
Sbjct: 445 VPSGRWYFSDKARLRQILFNLLNNAVKFTSRGFVEVYLKEMVEGSDTYLSIRVRDTGIGI 504

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  K +F  F        RR  G GLGL+IV+    L  G+++++S +   T+ + R+
Sbjct: 505 SKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKITQLMDGNITVTSEEGIGTSFDVRL 564


>gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 624

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 150/367 (40%), Gaps = 36/367 (9%)

Query: 431 TLVKVQGETIDHLS-EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             +  + + ++ L+ + + +   DG I  +       +     +L+       +  + +R
Sbjct: 7   ESLIRETDALETLTGDALLLVDRDGIILHATALASCFYGLPAPQLTGLPLGLALNDSAAR 66

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                                  SL+         VL   + PL  A+T           
Sbjct: 67  EICLPATGRPALVRWEPLPGHGHSLR--------RVLLRDLTPLRAAKT----------- 107

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                L E  EA +  +  K+ F+ ++++E+R+P+  I+G T+L   ++   L+ KQ +Y
Sbjct: 108 ----KLEEAREAAKAGERAKSHFLANITHEIRTPMIGILGMTELAMATE---LSPKQREY 160

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E    S+  LL ++NDI+D A ++ G  +L  +   L + + EV         +  + +
Sbjct: 161 LEMARHSAQSLLTVLNDIVDYARIETGAFELARTPFSLRETVEEVISVFRPLAAKKGLSL 220

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFS 722
                G +  + V D  RL Q+   ++ NA+ F+  GS V+  A    G         F 
Sbjct: 221 TYRCIGAVPQTLVGDPSRLRQVLINLVGNAVKFTDAGSVVLAVARIGGGQANDQTRLRFE 280

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IP D  K++F+ F         + +G GLGL+IV   + +  G  +++S +  
Sbjct: 281 VRDTGIGIPGDKIKAIFDSFTQADVSPARRYQGAGLGLAIVRQLVEMMQGSYNVASEEGK 340

Query: 781 VTTINCR 787
            +     
Sbjct: 341 GSVFTIE 347


>gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei DM98]
          Length = 927

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 309 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 353

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 354 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 412

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 413 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 472

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 473 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 529

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 530 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 589

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 590 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 649

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 650 GGSIEIDSLPDFGTTVTVALPLRE 673


>gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
 gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
          Length = 1014

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 396 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 440

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 441 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 499

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 500 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 559

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 560 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 616

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 617 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 676

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 677 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 736

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 737 GGSIEIDSLPDFGTTVTVALPLRE 760


>gi|297580226|ref|ZP_06942153.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
 gi|297535872|gb|EFH74706.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
          Length = 857

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 157/383 (40%), Gaps = 34/383 (8%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +               
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--------------- 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
           I+ +      ++            I +          T E+    V  +++ P+    Q 
Sbjct: 388 IQFLREDAQNHFLFEILERQLLPTIINAAQGNNPSDVTTEV-DGRVYRWNLSPIMVEGQI 446

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK
Sbjct: 447 ISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLK 506

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + 
Sbjct: 507 RT---PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAID 563

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      HE  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++   
Sbjct: 564 RIYRPLCHEKGLELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQL 622

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             GD     +  V + G  I E     +F  F+       R   G GLGL+IV S + + 
Sbjct: 623 IEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEML 682

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G + +SS     T    ++P +
Sbjct: 683 SGQLHVSSEYGIGTRFEIQLPIE 705


>gi|327296313|ref|XP_003232851.1| DRK1 histidine kinase [Trichophyton rubrum CBS 118892]
 gi|326465162|gb|EGD90615.1| DRK1 histidine kinase [Trichophyton rubrum CBS 118892]
          Length = 1321

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 113/250 (45%), Gaps = 24/250 (9%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 717 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 774

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 775 SLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQVDSSVP 834

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------DNGDF 719
              + D  RL QI   ++ NA+ F+  G  V L+  +                  D   +
Sbjct: 835 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VTLEIKKHVPPPPAEGEPEREVCADDEYAY 893

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            FSV++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG V ++S 
Sbjct: 894 EFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSE 953

Query: 778 DEGVTTINCR 787
               +T +  
Sbjct: 954 YGRGSTFHFT 963


>gi|304406284|ref|ZP_07387941.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344868|gb|EFM10705.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 791

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 9/243 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L + ++   KA+ IK+ F+ ++S+ELR+PL  IIG++++L             + +  I
Sbjct: 283 QLEQAHDEAIKANMIKSQFLANMSHELRTPLNAIIGYSEMLAEEAEELGEQIFVEDLGKI 342

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL L+NDILD++ ++AG M+++  T  L+ L+ +V  ++   + +N  ++    
Sbjct: 343 RNAGKHLLTLINDILDISKIEAGKMEIHMETFELSGLIQDVITTVKPLIDKNGNKLDXXX 402

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSS 729
                    D  +L QI   +LSNA  F+ +  T+ L+  R+       + F VK+ G  
Sbjct: 403 --XXXXXXTDITKLRQILINLLSNASKFT-QNGTISLEVNREPRKGRTGYCFRVKDTGIG 459

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +  + +F  F+       R   G GLGL+I  SF  L  G + + S     +   C 
Sbjct: 460 MSPEQVEKLFQPFMQADSSTTRKYGGTGLGLAISHSFSELMDGSIQVESEMGAGSIFTCW 519

Query: 788 IPS 790
           +PS
Sbjct: 520 LPS 522


>gi|295663949|ref|XP_002792527.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01]
 gi|226279197|gb|EEH34763.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01]
          Length = 1285

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 698 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 755

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 756 SLLTIIDDILDISKIEANRMVIEKIPFSMRGAVFNALKTLAVKANEKILNLIYQVDSSIP 815

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNNGSSI 730
            FV  D  RL QI   ++ NA+ F+ +G   +     D  +         F V + G  I
Sbjct: 816 DFVTGDPFRLRQIILNLVGNAIKFTERGEVRVTILKSDREECRPNEYSFEFIVSDTGIGI 875

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     +  +  
Sbjct: 876 EEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGQGSKFHFT 934


>gi|146340880|ref|YP_001205928.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146193686|emb|CAL77703.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Bradyrhizobium sp. ORS278]
          Length = 2117

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 137/307 (44%), Gaps = 22/307 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              +      +++ LQ T E L     + +       + +       +  +A RAL EK  
Sbjct: 1380 QQLAAELQAQQRELQQTNEQLEQKAQQLA------ERNVEVERKNQEIEQARRALEEKAT 1433

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L  KQ ++   I  + T L
Sbjct: 1434 ELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPDGNLTVKQVEFARTIHGAGTDL 1493

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
            LNL++DILDL+ +++G + ++   I+  +LL  V +    +     +   +  D  L  S
Sbjct: 1494 LNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRLLSFNIDVDPNLARS 1553

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNN 726
             V D +RL Q+   +LSNA  F++ G   +  +A   G                F V + 
Sbjct: 1554 IVTDSKRLQQVLKNLLSNAFKFTADGGVRLKVSAALGGWSADHPVLNSTPAVIAFEVTDT 1613

Query: 727  GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP+D  K +F  F         +  G GLGL+I     NL GG + + S+    +T 
Sbjct: 1614 GIGIPQDKQKLIFEAFQQADAGTSRKYGGTGLGLAISRELANLLGGEIHLRSAPGKGSTF 1673

Query: 785  NCRIPSK 791
               +P K
Sbjct: 1674 TLYLPLK 1680


>gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1424

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 138/304 (45%), Gaps = 16/304 (5%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              A + S  +E +  Q  L+  +  + E +   L   Q            +A + L  + 
Sbjct: 795  LTAELQSRSEELQVQQDELQRSNAELEEKAT--LLATQNRDIEAKNLQIEQARQELEARA 852

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y   I ++ + 
Sbjct: 853  QQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSHNLTPKQVEYAGIIHSAGSD 912

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
            LL L+NDILDL+ V+AG M ++   + L  LL+ V+ +      + ++   +  + G   
Sbjct: 913  LLQLINDILDLSKVEAGKMDISPERVALRRLLDYVEATFRPMTSQKSLEFTMSTAPGVPV 972

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGST-----------VILKAARDNGDFIFSVKNNG 727
              + D  RL Q+   +LSNA+ F+ +G             +     R      F VK+ G
Sbjct: 973  DLLTDDSRLRQVLRNLLSNAVKFTERGGVGLHIEPAVDQNIPAAVHRGGAVVAFHVKDTG 1032

Query: 728  SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              IPE   +++F  F         +  G GLGLSI     +L GG V++ S+    +T  
Sbjct: 1033 IGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSTPGQGSTFT 1092

Query: 786  CRIP 789
              +P
Sbjct: 1093 LYLP 1096


>gi|269966413|ref|ZP_06180498.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
 gi|269829000|gb|EEZ83249.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
          Length = 726

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 123/250 (49%), Gaps = 11/250 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+S Q
Sbjct: 357 EMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSSHQ 413

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I +SS  LL L+NDILDL+ +++G ++L+     + +++ +      +K     
Sbjct: 414 QEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMILFQSKATSKQ 473

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR----DNGDFI 720
           +++ +     +    + D  R+ Q+ + ++SNA+ F+  G   V +        + G   
Sbjct: 474 LKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTESGHVCVDVSYEELPEKERGVLT 533

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I +D   ++F  F         Q  G GLGL+I    +++ GG +  +S+ 
Sbjct: 534 FKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSMMGGKLVATSTK 593

Query: 779 EGVTTINCRI 788
              T     I
Sbjct: 594 GVGTCFEFSI 603


>gi|265764068|ref|ZP_06092636.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256676|gb|EEZ28022.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 812

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 102/541 (18%), Positives = 222/541 (41%), Gaps = 32/541 (5%)

Query: 269 LEHGNNKS----YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
           +  G  K     Y+    L +     + + + KE  ++ +     +I  N+ V + ++++
Sbjct: 278 IVDGYRKWNSEDYQWFSSLANIISICMELRIIKERVMHSEKLFH-DIFTNIPVGLELYNK 336

Query: 325 NRYLQFHNRSFVELWEID-------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
              L   N   +E++ +        L    +     ++ E LR+       L +     +
Sbjct: 337 EGVLLDCNNRNLEIFGVGDKNRIVGLNLFESPNMTRDIHESLRAGRPGTFHLKY-----D 391

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
                +  ++ +      + ++L +    +     + +  + T + +  +K +       
Sbjct: 392 FDEERRLFQSERRGVMDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFS 451

Query: 438 ETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              D+   G A     D         +R+L ++ +  L+    I +      R       
Sbjct: 452 IISDYSKVGYAKINLLDHTGFAVRQWYRNLGESHDTPLADIIGIFSHMHPDDRKSVLDFY 511

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFVNVTDSVRA 551
               A     FD + +          + + + S++     P P  + +    ++T     
Sbjct: 512 EKAKAGTERFFDGDLRIRPADGSDRWNWIHKSSMVTAYQSPNPRLELVEVNYDITVQKET 571

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    +   +++ +K++F+ ++S+E+R+PL  I+GF+DLL T       ++Q ++  
Sbjct: 572 EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMT---VDDPAEQEEFRR 628

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++T+LL L +DI+DL+ +DAG  +     + L      + Q +  K+ E  + +++
Sbjct: 629 TIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPE-GVELQI 687

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729
             D  L ++  AD   L Q+ +  +SNA+ F+ +G T+ +    D        V++ G  
Sbjct: 688 DEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHQG-TITVGYRIDARQQLEMFVEDTGIG 746

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I  +  ++VF+RF+      Q  G GLGL + +S I   GGH+ + S     +     +P
Sbjct: 747 ISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804

Query: 790 S 790
           +
Sbjct: 805 A 805


>gi|239624048|ref|ZP_04667079.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522079|gb|EEQ61945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 876

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 155/379 (40%), Gaps = 21/379 (5%)

Query: 428 KYNTLVKVQGETID----HLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +    +  + +  D     + +   +   D G I         +       +      + 
Sbjct: 219 RQRRELVYRSKLFDKLSLSIDDAFIIRDADTGYISYRGLNLERILGISMAEVENFY--KG 276

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +    +    E      F++      +  K  +    +L   V  Y    L   Q +  F
Sbjct: 277 LKEEDALAIREGIRNPGFSSPYERLVEYTKPNKEKFWML---VRVYRADDLNTPQLITVF 333

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            + T+ VR+ +AL E   +  +A+  K+ F+  +S+E+R+PL  IIG T +   S     
Sbjct: 334 SDRTEEVRSRQALQEAMMSAERANMAKSEFLSRMSHEIRTPLNAIIGLTTIAAASIRD-- 391

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +K    +  I+ SS  LL L+ND+LD++ +++  M L      + +L+N    ++  + 
Sbjct: 392 TAKAEDCLAKITFSSKHLLMLINDVLDMSKIESSKMVLQDEPFDIFELVNGFVSTVYAQA 451

Query: 663 HENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
            E  I  +   +  G+   F+ D  RL QI   + SNA+ F++ G  + L+ +R      
Sbjct: 452 KEKGIEFRETMEGFGEDTVFIGDSLRLNQILLNLSSNAVKFTAPGGCIRLEVSRHRNGNA 511

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                F + + G  + +D  + +F  F         +  G GLG+SI  + I L GG + 
Sbjct: 512 ADVLRFILSDTGIGMTKDAMERIFQPFEQADATISKRYGGTGLGMSITRNLITLMGGQIQ 571

Query: 774 ISSSDEGVTTINCRIPSKE 792
           I S     TT    IP K+
Sbjct: 572 IESESGVGTTCIVDIPFKK 590


>gi|291569174|dbj|BAI91446.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1009

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 127/259 (49%), Gaps = 18/259 (6%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            + +    L    +A   A+  K+ F+ ++S+ELR+PL  I+GFT LL+  +  +L +K 
Sbjct: 507 QTQKQAAELKRVADAANVANRAKSEFLANMSHELRTPLNAILGFTQLLQRDR--TLAAKH 564

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ ++ S   LL L+ND+L+++ ++AG +  N +   +   L  ++  +  K     
Sbjct: 565 QEYIKIVNQSGQHLLGLINDVLEMSKIEAGRITCNPTEFAIKRCLQAIQVMLQLKAESKG 624

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARD 715
           + +    +  +  FV  D  +L Q+   ++SNA+ F+ +G   +          L    D
Sbjct: 625 LTLNFQVEESVPKFVRTDESKLRQVLVNLISNAIKFTREGEVTLKVSVGQVDEDLGLFED 684

Query: 716 NG----DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGG 770
           NG       F + ++G  I  +    +F  F    + R  ++G GLGL I + F+NL GG
Sbjct: 685 NGVSNTYLRFEIIDSGCGIATEEINDLFQAFKQTQSGRESQQGTGLGLVISQRFVNLMGG 744

Query: 771 HVSISSSDEGVTTINCRIP 789
            + +SS     +  + +IP
Sbjct: 745 EIQVSSELGHGSCFSFQIP 763


>gi|163783845|ref|ZP_02178825.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880894|gb|EDP74418.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1]
          Length = 338

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 147/360 (40%), Gaps = 40/360 (11%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +   + +D+L EG+ V   D  +  +N    +L   +E     G H  ++      Y   
Sbjct: 15  ETFLKFLDYLKEGIIVIDEDKTVNYANKYVENLLNIKEPE---GKHFADVIKNNYLYSII 71

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAE 552
           +  +D             K +Q  + ++ D      +  + N + +  T +   +  +  
Sbjct: 72  AHEYD-------------KDVQEEI-IIDDKKFLVKVYHIDNKKFVHLTDITPFEVYK-- 115

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
                         + K  FV +VS+EL++P+  + G  + L+  +    +  + +++  
Sbjct: 116 --------------QAKKDFVSNVSHELKTPIAVLKGVIETLEAEEN---DKGKKKFISM 158

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
                  +  L+ND+L +A +++   K+  + I L   ++++ + ++    E N++    
Sbjct: 159 AQKRINQMNTLINDLLIIARLESKEDKIIKTNINLKRFIDQIYEDLSHLTQEKNVKFYNK 218

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +        D ++L  +   ++ NA+ ++ +   V +K   D    +  VK+ G  IP+
Sbjct: 219 VNENF-KIYGDEKKLSILLKNLIENAIKYNKENGKVEVKGFLDKDYTVIEVKDTGIGIPK 277

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F RF        R   G GLGLSIV+     H G VS+ S+    ++    +P 
Sbjct: 278 EALPLIFERFYRVDKSRSRNVGGTGLGLSIVKHIAEAHKGKVSVESTLGKGSSFKVYLPK 337


>gi|149376372|ref|ZP_01894135.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149359386|gb|EDM47847.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 756

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 7/259 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +T           R  RAL    E   +    + +F+  +S+E+R+PL  ++G   L 
Sbjct: 237 EDRTREISEKNEALQRGNRALVRAKEDAVRRARARANFLASMSHEIRTPLNGVLGMLGLA 296

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G++   Q   +E    +   LL L+NDILD++ V+AG + L      L +L+ E 
Sbjct: 297 LE---GNMEQAQRNRLEIALNAGQSLLGLLNDILDISKVEAGKLSLENIPFSLRNLVEEC 353

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               A +    NI +    D +L  +F+ D  R  QI + +LSNA+ F+  G  V ++A 
Sbjct: 354 ATLHAQQARRKNIDVVADIDCELPETFLGDPTRTRQILNNLLSNAIKFTESG-CVRIRAT 412

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
           R NG+    V + G  + ++    +F+ F        R   G GLGL++    +    G 
Sbjct: 413 RYNGNVRIDVIDTGIGMSKEGLHRIFSPFSQADSDTTRLYGGTGLGLTLCRQLVERMHGQ 472

Query: 772 VSISSSDEGVTTINCRIPS 790
           + + S +   T     +P 
Sbjct: 473 ILVDSEEHEGTHFTVNLPL 491


>gi|302659494|ref|XP_003021437.1| sensor histidine kinase/response regulator, putative [Trichophyton
           verrucosum HKI 0517]
 gi|291185335|gb|EFE40819.1| sensor histidine kinase/response regulator, putative [Trichophyton
           verrucosum HKI 0517]
          Length = 1318

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 113/250 (45%), Gaps = 24/250 (9%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 719 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 776

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 777 SLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQVDSSVP 836

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------DNGDF 719
              + D  RL QI   ++ NA+ F+  G  V L+  +                  D   +
Sbjct: 837 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VTLEIKKHVPPPPAEGEPEREVCADDEYAY 895

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            FSV++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG V ++S 
Sbjct: 896 EFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSE 955

Query: 778 DEGVTTINCR 787
               +T +  
Sbjct: 956 YGRGSTFHFT 965


>gi|239907263|ref|YP_002954004.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797129|dbj|BAH76118.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 869

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 217/605 (35%), Gaps = 51/605 (8%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
            ++++                    +         + AL +     +        +   I
Sbjct: 132 AAFRELAMQGMAAVSDNRAWLGVERQAAFAALEKQADALSETVRRCMDAAASRQTRLNNI 191

Query: 280 VRVL----NSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQN-RYLQF 330
           +        +F  A +AI  S+       +         +      AI + D +   +  
Sbjct: 192 LFFAWISFLAFLAASLAIAGSRRRKAEQAMLASEDKYRSLFDQARDAILVVDDDTGRILD 251

Query: 331 HNRSFVELWEIDLAFLATNPS----NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            NR+    W      L    +      +  +    A+ L +  +  T +E         E
Sbjct: 252 CNRALAAEWGYPPETLIGRTTEAVGLTDPADDDAPASVLGQNGSLTTIRETRMRTAAGDE 311

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                  + +G+      T         +  ++T     E        +     D+L +G
Sbjct: 312 R---LVSVKSGRFRLGEATVRLD-----ICRDITELRREEEALRGREAMLRSLGDNLPDG 363

Query: 447 VAV---FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN---ESDGWDLF 500
           V         G     N  F  + +  E  L  G  +    A     +    E D   L 
Sbjct: 364 VIYTLEVDSAG-----NHRFLYVSQGLERIL--GLPVALALADAELVFASIVEDDRERLR 416

Query: 501 AAIITSF-DDERKSLQGTLELLSDSVL--EYSIIPLPNAQTML----TFVNVTDSVRAER 553
            A I S    E   +Q  +      V+  ++   P P +  ++     + +V+   R E 
Sbjct: 417 QAEIQSMATGEPFDVQARILAPDGGVIWGQFRAAPRPGSGRVVLFDGFYFDVSALKRIEG 476

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L         A + K+ F+ ++S+E+R+PL  ++G   LL+T+ LG    +++ YV   
Sbjct: 477 DLRRAMVVAETASQSKSEFLANISHEIRTPLNGVLGMLQLLETAPLG---REEAGYVTTA 533

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 L  ++ DILD + ++AG M +  + + + D+  +V  +++ +     I   ++ 
Sbjct: 534 LKCGRGLTRVLGDILDFSLLEAGAMVIKSTPVDVRDVTADVLGALSIECRARGIDAGLVV 593

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGS 728
              + +  + D  RL QI   ++ NA+ F+  GS  + +  A   G     +F+V + G 
Sbjct: 594 APDVPARVLTDGARLRQILFNLVGNAIKFTQAGSVRLDIALASQRGQAAVLLFTVADTGI 653

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +PE+    VF  F        RR  G GLGL IV+  + L GG +++ S     T I+ 
Sbjct: 654 GMPEEKLDDVFEPFTQADGSLTRRFGGTGLGLGIVKRLLTLLGGFLAVESRVGVGTRIDF 713

Query: 787 RIPSK 791
            +P K
Sbjct: 714 SLPCK 718



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 104/346 (30%), Gaps = 44/346 (12%)

Query: 118 WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
           WL     ++   A   L K+  +         D A   + R++    F  I  L  + + 
Sbjct: 151 WLG----VERQAAFAALEKQADALSETVRRCMDAAASRQTRLNNILFFAWISFLAFLAAS 206

Query: 178 LA----ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANIS----YKKNTET 228
           LA          + +      ++ LFD     +   D   G IL  N +    +    ET
Sbjct: 207 LAIAGSRRRKAEQAMLASEDKYRSLFDQARDAILVVDDDTGRILDCNRALAAEWGYPPET 266

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
                 +A+G       ++    ++  +       ET      G+ +   +       GE
Sbjct: 267 LIGRTTEAVG-LTDPADDDAPASVLGQNGSLTTIRETRMRTAAGDERLVSVKSGRFRLGE 325

Query: 289 AG----IAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIF---DQ--NRYLQFHNRSF 335
           A     I  D+++     + L     +L     NL   +      D   N    + ++  
Sbjct: 326 ATVRLDICRDITELRREEEALRGREAMLRSLGDNLPDGVIYTLEVDSAGNHRFLYVSQGL 385

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL- 394
             +  + +A        + +   +          + +  ++       + E       + 
Sbjct: 386 ERILGLPVALALA--DAELVFASIVED-------DRERLRQAEIQSMATGEPFDVQARIL 436

Query: 395 -PNGQTLH--VIVTSNPRGGTIWMFE----NLTVQVDLETKYNTLV 433
            P+G  +         P  G + +F+    +++    +E      +
Sbjct: 437 APDGGVIWGQFRAAPRPGSGRVVLFDGFYFDVSALKRIEGDLRRAM 482


>gi|237746076|ref|ZP_04576556.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229377427|gb|EEO27518.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 790

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 99/483 (20%), Positives = 184/483 (38%), Gaps = 43/483 (8%)

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE---NIFSVYKSSETHKDT 391
           F  LW  D  +  T  + +E      +      + +    ++    I +   + E   + 
Sbjct: 25  FTVLWGNDYYYSRTGYTREEYETRFHNRVSEHYRDDPGMLRQIGDRILAARDAGEKRYEV 84

Query: 392 WHL---PNG--QTLHVIVTSNPR--GG---TIWMFENLTVQVDLETKYNTLVKVQGETID 441
                  +G    + +I T      GG      +F ++T  V  + +       +    D
Sbjct: 85  VCRMPQKDGAYIWIKIIGTFTDEFVGGKQVIYCVFADITDLVRAQQE-------RTVAFD 137

Query: 442 HLSEGVAVFG--PDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            L   VA F    +G      +N  F + +     + SP    R         + E +  
Sbjct: 138 SLPGFVARFRMRKNGMPEFIGANERFVAFFGKRPEQGSPCPLYRLDIPENREAFAE-NMP 196

Query: 498 DLFAAIITSFDDERKSLQGTLELLS------DSVLE---YSIIPLPNAQTMLTFVNVTDS 548
            +       F    K+ QG    L       D + +   Y +I L               
Sbjct: 197 LMQKGEPVRFVIREKNRQGEDAWLQLNAECIDRIADDPVYLVIYLDITDVTELRDLQKKL 256

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                 L    E   +A+++K+ F+  +S+++R+P+  I G   + +      +  K  +
Sbjct: 257 EERTAMLRNALEMAERANQVKSDFLARMSHDIRTPMNAITGLISIARDCVNDPV--KIRE 314

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  +  SS  LL+L+NDILD++ +++G M+L          ++++  ++  +  +  I 
Sbjct: 315 CLNKLEFSSGSLLSLINDILDMSKIESGRMELKKREFSFVAFIDDIVSAVYAQAQKKRIG 374

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFS 722
             V     +      D  +L QI S +LSNA+ F+  G  V L+           + +F+
Sbjct: 375 FHVEIAENVRELYSGDALKLKQIVSNLLSNAIKFTDSGGRVELQVEEGQRIKRTCELVFT 434

Query: 723 VKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V +NG  +  D+ + VF  F  +  HR  R G GLGL+IV S++ L  G V + S     
Sbjct: 435 VSDNGIGMEPDVIERVFLPFEQDVRHRENRGGSGLGLAIVHSYVQLMNGRVDVESEPGKG 494

Query: 782 TTI 784
           +  
Sbjct: 495 SRF 497


>gi|254506395|ref|ZP_05118537.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219550569|gb|EED27552.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 1142

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 173/413 (41%), Gaps = 32/413 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +  L+      +  G  I ++    ++      G          +  E+ +   +  + 
Sbjct: 656  RYLELFTFPTGLIQVGRPIADVIRHNAQQGLCGPGDPEEHVRRRVYHLEQGTRHTSSRIR 715

Query: 522  SD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
             D  V+E    P+P    +++F ++T    AE+AL E NE+L +                
Sbjct: 716  PDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKEANESLEERVHKRTQELENLNKQL 775

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                       + K+ F+  VS++L  PL     F   L          K SQ++E    
Sbjct: 776  VAATQRSELESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAQEEETKKLSQHIESALG 835

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L+ D+LD++ +++G + +N     +ND+L  +    +    +  I  +++   
Sbjct: 836  AAE---DLIGDLLDISRLESGKLDVNVHAFAINDVLANLNAEFSALAKQQGIDFEMV--P 890

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  +D + L ++    L+NA  ++ KG  V+L   R +G     V +NG+ I E+  
Sbjct: 891  SQLIVQSDPKLLRRVVQNFLTNAFRYNPKG-KVVLGVRRVDGQARIEVWDNGTGIEEEKQ 949

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F   +     +G+GLGL+I +   ++ G  +S+ S     +  +  +
Sbjct: 950  QEIFEEFTRGSQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPGQGSVFSITL 1002



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFTFPTGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++               +  +  ++   +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCGPGDPEEHVRRRVY-HLEQGTRHTSSRIRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKEANESLEE 759


>gi|163793550|ref|ZP_02187525.1| two component sensor kinase [alpha proteobacterium BAL199]
 gi|159181352|gb|EDP65867.1| two component sensor kinase [alpha proteobacterium BAL199]
          Length = 414

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 167/366 (45%), Gaps = 10/366 (2%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
               +     ++   + + +   + G I  +N     L+  + + L  G H   +  +  
Sbjct: 46  RVAEEKHRAILETSGDAIVLANAETGLIVEANDRAGVLFACDASELV-GMHQSELHPSEQ 104

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R     D  +   A      D   ++Q     +S   +    I +    T++ F      
Sbjct: 105 RDRYRWDFRNARNAGRMLLPD--VTIQRRDGTVSSVEITARTIEIDGVLTLVGFYRDISH 162

Query: 549 VRA-ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQ 606
            +A E  L    EA R A + K  F+ ++S+ELR+PL  IIG ++L+++   G++ + K 
Sbjct: 163 RKAREYELIAAREAARAASDSKTRFLANMSHELRTPLNAIIGMSELIRSELWGAVGHPKY 222

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y   I+ S   LL+L+NDILD + V+ G + L+   I + DLL + +++IA  + E +
Sbjct: 223 AEYATDINDSGLHLLDLINDILDFSRVEMGKVTLHDEDIDVTDLLEQSRRTIAGLLEERD 282

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKN 725
           +   V   G      ADR+ + Q+   +LSNA+  +  G  V + +  D  G     V++
Sbjct: 283 LTCVVRVSGS-PILTADRRAMRQMLLNLLSNAVKHTPPGGRVTITSDVDGQGGLAIVVED 341

Query: 726 NGSSIPEDMCKSVFNRF-VSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +  + +   F V       R  G GLGL+I +  +  HGG +SI SS+   T+
Sbjct: 342 TGRGIPAERLEWITEPFNVDEEISVTRQGGAGLGLAITKRLVERHGGQISIDSSEGFGTS 401

Query: 784 INCRIP 789
           +    P
Sbjct: 402 VRLSFP 407


>gi|89212829|gb|ABD63915.1| kinase sensor ResE [Bacillus cereus]
          Length = 591

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + I  + 
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPA-------EHFLQVWQEEKEIELSK 301

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 S+  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 302 KL---PSELVELFHLVVES--EQQQVVEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     +  
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEID 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+   + ++  + ++ +       +  +
Sbjct: 403 EFVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V   G +  +     R+ Q+ + ++ NA+  ++ G  V L     N   IF V+++G
Sbjct: 463 ALTVDFKGPIEQYPFGADRMEQVLTNLIDNAIRHTNAGGHVTLVIDMKNNGLIFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF        R                +I ++ +  H G +S+SS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 779 EGVTTINCRIPSK 791
              TT +  +P++
Sbjct: 577 GEGTTFSVYLPNR 589


>gi|84685347|ref|ZP_01013245.1| sensory box histidine kinase/response regulator [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666504|gb|EAQ12976.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2654]
          Length = 847

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 157/380 (41%), Gaps = 25/380 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                  +     ++   + + V    GRI   N A   ++  +  ++        I   
Sbjct: 211 RTIEAASRRMETIVNTSLDAIVVSNRTGRIIAFNDAAEIIFGYKREQVIGQLMSEIIVPP 270

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSVLEYSIIPLPNAQT----- 538
             R  +E+           +  ++R   QG ++L    SD  +  + + + +A+      
Sbjct: 271 HLRNAHEAGMERF-----RTTGEKRVIGQGRIKLEAMRSDGSVFPAEMAIESAEGSDGEI 325

Query: 539 -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    +++  V+AE  L E  +     ++ K+ F+  +S+E+R+PL  ++G   LLK +
Sbjct: 326 FVGYLRDISHRVKAETDLVEARDKAVAGEKAKSEFLAVMSHEMRTPLNGLLGTLALLKGT 385

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K   L++KQ+QYV+ +  S  +LL  +ND+LD+   +AG + +++    L+ L+  V  +
Sbjct: 386 K---LSAKQAQYVDNLEVSGGLLLTHINDVLDVTKYEAGKLDVDFVPTDLSALVRSVVDN 442

Query: 658 IATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-- 714
                  +   I+       L   + D QRL Q+   ++ NA+ F+ +G  + ++     
Sbjct: 443 QRDLASASENTIEWSWVGKPLPPVMTDPQRLRQVLINLVGNAVKFT-RGGRIRIEIGAVP 501

Query: 715 --DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
                D   +V + G  I  +    +F  F +        R G GLGL I        GG
Sbjct: 502 QGGGADVTITVSDTGIGIAPEDIDRLFEDFETGDRSYGRARNGTGLGLGIARRLTRALGG 561

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +   S     +T    +P 
Sbjct: 562 TIGAESELGEGSTFWIDLPL 581


>gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509]
          Length = 708

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 158/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 110 RLEEHEQFNRKIVASAPVGICILRTADGVNILSN----ELAHTYLNMLTHEDRQRLTQII 165

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I            V+V+
Sbjct: 166 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI---------CVLVDVS 206

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 207 SRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 263

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 264 DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 323

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 324 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVRADGDYLSIRVRD 382

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 383 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 442

Query: 784 INCRIPS 790
              RIP 
Sbjct: 443 FTVRIPL 449


>gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 858

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 20/296 (6%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPL---PNAQTMLTFVNVTDSV------RAERALTEKNEA 561
           R++L   L +L   +L   I+ L    +AQ M       +             L    + 
Sbjct: 282 REALLLILTVLVGYILLVMILQLLRRRSAQEMELQKKEQERKYQTQLEEQNHKLEIALQH 341

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K  F+ ++S+++R+P+  IIGFT L  T        +   Y++ IS SS  LL
Sbjct: 342 EGAANRAKREFLFNMSHDIRTPMNAIIGFTSLAATHI--DNREQVLDYLKKISTSSQHLL 399

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSF 680
           +L+ND+LD++ +++G +K+    + L DL+++V+  I   +    + + +   D +    
Sbjct: 400 SLINDVLDMSRIESGKVKIEEKAVHLPDLVHDVRSIIQPNVSAKRLSLFIDTVDVENEDI 459

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDM 734
           + D  RL QI   ILSNA+ F+  G  + ++ A  NG       + F +K+NG  + E+ 
Sbjct: 460 ITDPLRLNQILLNILSNAIKFTPTGGMISIRIAEKNGAPAGRACYEFRIKDNGIGMSEEF 519

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            K +F  F    +      +G GLG+SI ++ ++L GG ++I S     +     +
Sbjct: 520 QKHIFEEFAREENSTVSGIQGTGLGMSITKNIVDLMGGSITIESEPGKGSEFIVNL 575


>gi|289433638|ref|YP_003463510.1| two-component sensor histidine kinase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289169882|emb|CBH26422.1| two-component sensor histidine kinase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 610

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 151/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTERERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      +      ++    +  S   +R +      L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDNF-----QFEDLMEVDGSLTMDRSTSDKPYILRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFE-MMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   ++F+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKYENEIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKSKGTIIKFTLP 600


>gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
 gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
          Length = 1202

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 122/253 (48%), Gaps = 17/253 (6%)

Query: 550 RAERALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++R L    E L +++       + K+ F+ ++S+E+R+P+  IIG + L   +K   L
Sbjct: 463 KSQRELHIVTEELEESNIQTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETK---L 519

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           ++KQ  Y+  +++S+  LL ++NDILD + ++AG +++      L+ +L EV   I    
Sbjct: 520 DNKQRHYISKVNSSAQALLGIINDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSA 579

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA---ARDNG 717
            +  + + +     +    + D  R+ Q+ + + SNA+ F+  G   V +          
Sbjct: 580 KQKKLSLIIDVASDVPDQLIGDPLRIKQVLTNLTSNAVKFTETGEVRVKVSTAMMREREC 639

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              F+VK+ G  +  +   S+F  F        R   G GLGLSI ++ + L GG VS+ 
Sbjct: 640 KINFAVKDTGIGMTREQIDSLFQSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVSVE 699

Query: 776 SSDEGVTTINCRI 788
           S        +  +
Sbjct: 700 SRLGEGARFSFSL 712


>gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1225

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 21/249 (8%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+  +S+ELR+PL  I+GF  L+  +   S+  +  QY+E IS +  
Sbjct: 735 KEAADAANLAKSEFLASMSHELRTPLNAILGFAQLM--NYDSSIKVEHHQYLEIISRAGE 792

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LLNL+NDIL+++ ++AG + L      L  LL  +++ +  K     + +    D  L 
Sbjct: 793 HLLNLINDILEMSKIEAGRVTLTEDDFDLLHLLENLEKMLCLKAQSKGLLLTFELDETLP 852

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------------DFIF 721
            +V  D ++L Q+   +L NA  F+  G  V L++ R N                    F
Sbjct: 853 QWVRGDEKKLRQVLINLLGNATKFTESG-CVTLRSFRVNQAKVRETENSLIKNDALRIRF 911

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  I E+  K +F  F       +   G GLGLSI + F+ L GG +++ S    
Sbjct: 912 EVADTGLGIAENELKRLFQAFSQTTTGLKSGEGTGLGLSISQQFVQLMGGEITVKSQVNV 971

Query: 781 VTTINCRIP 789
            +T    IP
Sbjct: 972 GSTFAFEIP 980



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 105/315 (33%), Gaps = 36/315 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  + +       ++  + V + + +    +   N+S   L +     L +N    ++ 
Sbjct: 256 REKALAESEQRFQTLIREMQVGVLLLNNRAEILISNQSAQTLLK-----LKSNTETPQI- 309

Query: 357 EFLRSANKLPEQ-LNWKTWKENIFSVYKSSETHKDTW-----HLPNGQTLHVIVTSNPR- 409
            F +    + E   ++   K  +       +  ++         PN Q   ++V + P+ 
Sbjct: 310 -FGQDWYLMQEDGSDYNPQKLPVQFAITQRQPVRNIIIGIKNSYPNAQCRWLLVNATPQL 368

Query: 410 ------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPA 462
                    I    +++ Q   E       +     ++  ++G+  +  P G+    +  
Sbjct: 369 AKNGSVERVICTVSDISQQKQTEAALRDSEERFALAVEGANDGIWDWDIPTGK-TYFSSR 427

Query: 463 FRSLWKTEENRLSPG----------THIRNIAATCSRYYN-ESDGWDLFAAIITSFDDER 511
           ++ +    E  L                  +     RY N E   +++    +T   + R
Sbjct: 428 WKMMLGYGEEELPNHLESFKKILYSEDSERVFNILERYLNQEIPYYEVEFRSVTKQGNIR 487

Query: 512 KSLQGTLELLSDSVLEYSIIP--LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
             L   + L       Y ++       +       + +S + ER++    + +R+  E+K
Sbjct: 488 WILSRGVALWDSKNKAYRMVGSNTDITERKQVEQALQESAKRERSIVRVMQRMRETLELK 547

Query: 570 NSFVQHVSYELRSPL 584
             F    + ELR  L
Sbjct: 548 TIFNAT-TEELRQAL 561


>gi|121725857|ref|ZP_01679157.1| sensor histidine kinase LuxQ [Vibrio cholerae V52]
 gi|121631622|gb|EAX63990.1| sensor histidine kinase LuxQ [Vibrio cholerae V52]
          Length = 857

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 156/379 (41%), Gaps = 26/379 (6%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +   +           
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--IQFLREDAQNHFL 400

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +         ++   D  + + T  D        +  ++   ++            +
Sbjct: 401 FEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISI----------I 450

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T    AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +  
Sbjct: 451 TQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT-- 508

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + +   
Sbjct: 509 -PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYR 567

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++     GD
Sbjct: 568 PLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGD 626

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                +  V + G  I E     +F  F+       R   G GLGL+IV S + +  G +
Sbjct: 627 PLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQL 686

Query: 773 SISSSDEGVTTINCRIPSK 791
            +SS     T    ++P +
Sbjct: 687 HVSSEYGIGTRFEIQLPIE 705


>gi|225678001|gb|EEH16285.1| signal transduction histidine-protein kinase barA [Paracoccidioides
            brasiliensis Pb03]
          Length = 1406

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 816  REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 873

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 874  SLLTIIDDILDISKIEANRMVIERIPFSMRGAVFNALKTLAVKANEKILNLIYQVDSSIP 933

Query: 679  SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNNGSSI 730
             FV  D  RL QI   ++ NA+ F+ +G   +     D  +         F V + G  I
Sbjct: 934  DFVTGDPFRLRQIILNLVGNAIKFTERGEVRVTILKSDREECRPNEYSFEFIVSDTGIGI 993

Query: 731  PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     +  +  
Sbjct: 994  EEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGHGSKFHFT 1052


>gi|86137741|ref|ZP_01056317.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85825333|gb|EAQ45532.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 810

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 155/389 (39%), Gaps = 24/389 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW----------K 468
           +      E +   L +     +D    G+          L +   RS++           
Sbjct: 272 IRTLKRRERQLEILSRRLEIAVDISKIGIWELNTRSNETLWDQNLRSIYDYKDEGPIEFG 331

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           T E+ L P    + I       +        F  ++ S +       GT    S   L  
Sbjct: 332 TWESYLHPEDRQQAIYEMRRASHAGGSFTSQFRIVLPSGEVRHIRSMGTAYADSAGWLRM 391

Query: 529 SIIPLPNAQTMLTFVNVTDSV----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             + L   + +     + ++     +    LT+   A   AD  K+ F+ ++S+E+R+P+
Sbjct: 392 LGVNLDVTRDVHLHEKLIEANATLLQRNNDLTDAKVAAESADRAKSEFLANMSHEIRTPM 451

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G  +L+  + LG   +++ +Y+  I  SS  LL ++NDILDL+ ++AG + ++   
Sbjct: 452 NGILGMAELMSEADLG---AEEREYLTTIQDSSNALLKIINDILDLSRLEAGRLAISPVD 508

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
             L + +      +  K  E  + + V     L      D  RL QI   ++ NA+ F+S
Sbjct: 509 FDLRNCVAGAVNLLRPKAREKGLWMSVDFAENLPEQVYGDDGRLRQILVNLIGNAVKFTS 568

Query: 704 KGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           +G  V +K   D  D      +V++ G  I +   + +F+RF        R   G GLGL
Sbjct: 569 EGG-VDVKVTCDEQDPYSLEIAVEDTGIGISDSQAEYIFDRFAQADAAITRAFGGTGLGL 627

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCR 787
           +I        GG + +  + E  +    +
Sbjct: 628 TISSILAKRMGGGIELCRAREEGSCFRLK 656



 Score = 37.6 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 108/318 (33%), Gaps = 23/318 (7%)

Query: 24  IAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLT 83
           + VF    G+++  I     L   R  + + +      L  +  +L      +  +    
Sbjct: 245 LVVF-IAGGLIVIPIFMAGRLSAARRDVIRTLKRRERQLEILSRRLE-----IAVDISKI 298

Query: 84  IVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS--- 140
            +W+    + E +   + R      D   + F  W  + H     +A  ++R+   +   
Sbjct: 299 GIWELNTRSNETLWDQNLRSIYDYKDEGPIEFGTWESYLHPEDRQQAIYEMRRASHAGGS 358

Query: 141 ----FDLVAETQNDCAIKIEGRVSGSCA-FLRILSLDGIYSELAETTLKCKKLSNHISVF 195
               F +V  +     I+  G      A +LR+L ++   +       K  + +  +   
Sbjct: 359 FTSQFRIVLPSGEVRHIRSMGTAYADSAGWLRMLGVNLDVTRDVHLHEKLIEANATLLQR 418

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE---IKKRM 252
                         D+A     AN+S++  T   GI+    +     L  EE   +    
Sbjct: 419 NNDLTDAKVAAESADRAKSEFLANMSHEIRTPMNGILGMAELMSEADLGAEEREYLTTIQ 478

Query: 253 ISSSALEKNFCE--TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
            SS+AL K   +   +S LE G   +   V        AG A+++ +       L  + +
Sbjct: 479 DSSNALLKIINDILDLSRLEAG-RLAISPVDFDLRNCVAG-AVNLLRPKAREKGLWMSVD 536

Query: 311 ILHNLTVAIAIFDQNRYL 328
              NL   +  +  +  L
Sbjct: 537 FAENLPEQV--YGDDGRL 552


>gi|86136340|ref|ZP_01054919.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85827214|gb|EAQ47410.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 536

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 158/369 (42%), Gaps = 27/369 (7%)

Query: 438 ETIDHLSEGVAV--FGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
             +D +   V V   G DG  R    N   R   K  +      + +     +       
Sbjct: 11  AILDAVGMAVIVLEVGDDGVPRYIAMNKRSREFTKIPQEGWYGKSALEIFGGSTGERALA 70

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--------NV 545
                  +A   +++    ++QGT        +  ++ P+ ++   LT +        + 
Sbjct: 71  IHTSVARSAKKKTYEINLPAVQGT------RHIRTTMTPVFDSTGKLTHMVGSTEDVTSE 124

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +   A        E   +A++ K  F+ ++S+E+R+P+  I+G  +LLK ++   L+ +
Sbjct: 125 RERDAALELTRIAKEKAEEANKAKERFLANMSHEIRTPMNGILGICELLKETE---LDKE 181

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           QS + + I  S+  LL ++ND+LD + + A  + L+     L  L+ E+   ++ K    
Sbjct: 182 QSLFADTIFNSTNALLEIINDVLDFSQITADKISLHPEPFSLRVLIEEIAVLLSAKTAYK 241

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN--GDFIF 721
            ++  V     + S F+ D  ++ QI   ++ NA+ F+ +G   + +   + +  G   F
Sbjct: 242 GLKFNVNYPENVPSLFIGDVSKVRQILLNLIGNAIKFTDEGHVSITVSHGQGSPAGPLQF 301

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + + G  I      ++F+ F   +   +    G GLGL+I ++ +   GG +S+ S+ +
Sbjct: 302 EIADTGCGIEASKLGTIFSAFERVSGTQKNLSEGTGLGLAISQALVERMGGEISVKSTPD 361

Query: 780 GVTTINCRI 788
             TT    +
Sbjct: 362 LGTTFRVSL 370


>gi|297569592|ref|YP_003690936.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925507|gb|ADH86317.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 807

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 96/412 (23%), Positives = 168/412 (40%), Gaps = 56/412 (13%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +V LE +     +     +      +A++         + A   +      +   G   +
Sbjct: 130 RVTLENRLRESQQRLELALSGAD--LALWD-------WHLAADHITYDGHWQAITGQQQQ 180

Query: 482 NIAA---TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-----------SDSVLE 527
            +AA      R  +  D   + AA+      E  + +    L               V++
Sbjct: 181 ELAADGDAWRRLIHPEDRSRVLAALNRHLTGESSTFEAEYRLRHREGHWIWLLDRGRVVQ 240

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI------------------- 568
            +    P  + + T + ++   +AE  L ++NE L +A+                     
Sbjct: 241 RAEDGTP-LRLVGTCLEISRRKQAEAELEQRNEELTRANHQLAASNRRAAVLAAEAEAAN 299

Query: 569 --KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+ H+S+E+R+P+  +IG T LL     G L+ +Q  Y   I AS   LL ++ND
Sbjct: 300 RAKSDFLAHMSHEIRTPMNGVIGMTALLL---AGDLDEQQRHYAGVIKASGEALLRIIND 356

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685
           ILDLA ++AG ++L      L  LL E+   +  +     + +K      L      D  
Sbjct: 357 ILDLAKIEAGRLELVSRDFSLPALLAEIFTLLQPEAAAKGLALKEQVAADLPPRLRGDDV 416

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           RL QI   +L NA+ F+  G  V L  +  + +  FSV++ G  +P ++ + +F  F   
Sbjct: 417 RLRQILLNLLGNAIKFTDHGE-VELSVSGQH-EICFSVRDTGPGVPPELQQQIFAPFEQA 474

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP---SKE 792
               +RR  G GLGL+I      L  G + + S+     T +C +P   +KE
Sbjct: 475 GAADRRRPAGTGLGLAICRRLAQLMEGSLRVESTPGAGATFHCVLPFAAAKE 526


>gi|315127117|ref|YP_004069120.1| signal transduction histidine kinase two-component system with
           Protein-glutamate methylesterase domain
           [Pseudoalteromonas sp. SM9913]
 gi|315015631|gb|ADT68969.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas sp. SM9913]
          Length = 918

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 143/316 (45%), Gaps = 8/316 (2%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           I + + T    +N    W     +   F+    +LQ +++ L  S ++   +    +Q  
Sbjct: 467 INSFSKTKKHVFNTDSSWYEVLQLQQQFEMLGNALQHSIKSLQASNVKNEDLNKQLSQFN 526

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               +       E  LT+  +   +A+  K+ F+ ++S+ELR+P+  I+G  ++L   + 
Sbjct: 527 QQLADKVAEQTTE--LTQAVKLANEANIAKSQFLANMSHELRTPMNGILGMGEVLLRDQ- 583

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            SL+++Q + +     S+  LL+++NDILD + ++A  M+LN     +   +  ++    
Sbjct: 584 -SLSNEQKELLLTQQKSAKNLLDILNDILDFSKIEANAMELNSRPTQVAPFIENIRSLFT 642

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +    +   +I    L  ++  D  RL Q+   +LSNA  F+ +G  V L    ++  
Sbjct: 643 PIVSTKEVEFSIIQTTNLPLYISVDELRLNQVIINLLSNAYKFTEQG-FVRLSFDYNDNK 701

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV+++G  I +     +F+ F         +  G GLGL+I +  I +  G + + S
Sbjct: 702 LQVSVEDSGIGIAKAQQSLLFSEFTQADVGVARKYGGTGLGLAISQKLIKMMDGEIHLHS 761

Query: 777 SDEGVTTINCRIPSKE 792
            +   +T    I + E
Sbjct: 762 EEGKGSTFTFSISAPE 777


>gi|301163451|emb|CBW23002.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 812

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 102/541 (18%), Positives = 222/541 (41%), Gaps = 32/541 (5%)

Query: 269 LEHGNNKS----YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
           +  G  K     Y+    L +     + + + KE  ++ +     +I  N+ V + ++++
Sbjct: 278 IVDGYRKWNSEDYQWFSSLANIISICMELRIIKERVMHSEKLFH-DIFTNIPVGLELYNK 336

Query: 325 NRYLQFHNRSFVELWEID-------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
              L   N   +E++ +        L    +     ++ E LR+       L +     +
Sbjct: 337 EGVLLDCNNRNLEIFGVGDKSRIVGLNLFESPNMTRDIHESLRAGRPGTFHLKY-----D 391

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
                +  ++ +      + ++L +    +     + +  + T + +  +K +       
Sbjct: 392 FDEERRLFQSERRGVMDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFS 451

Query: 438 ETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              D+   G A     D         +R+L ++ +  L+    I +      R       
Sbjct: 452 IISDYSKVGYAKINLLDHTGFAVRQWYRNLGESHDTPLADIIGIFSHMHPDDRKSVLDFY 511

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFVNVTDSVRA 551
               A     FD + +          + + + S++     P P  + +    ++T     
Sbjct: 512 EKAKAGTERFFDGDLRIRPADGSDRWNWIHKSSMVTAYQSPNPRLELVEVNYDITVQKET 571

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    +   +++ +K++F+ ++S+E+R+PL  I+GF+DLL T       ++Q ++  
Sbjct: 572 EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMT---VDDPAEQEEFRR 628

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++T+LL L +DI+DL+ +DAG  +     + L      + Q +  K+ E  + +++
Sbjct: 629 TIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPE-GVELQI 687

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729
             D  L ++  AD   L Q+ +  +SNA+ F+ +G T+ +    D        V++ G  
Sbjct: 688 DEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRG-TITVGYRIDTRQQLEMFVEDTGIG 746

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I  +  ++VF+RF+      Q  G GLGL + +S I   GGH+ + S     +     +P
Sbjct: 747 ISIENQEAVFDRFMKVDSFVQ--GTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804

Query: 790 S 790
           +
Sbjct: 805 A 805


>gi|91224013|ref|ZP_01259276.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
 gi|91190924|gb|EAS77190.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
          Length = 878

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 124/250 (49%), Gaps = 11/250 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R    +    E+   A+  K+ F+ ++S+E+R+PL  I+G T++L  S+   L+S Q
Sbjct: 357 EMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSE---LSSHQ 413

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V+ I +SS  LL L+NDILDL+ +++G ++L+     + +++ +      +K     
Sbjct: 414 QEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMILFQSKATSKQ 473

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK----AARDNGDFI 720
           +++ +     +    + D  R+ Q+ + ++SNA+ F+  G   V +       ++ G   
Sbjct: 474 LKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTESGHVCVDVSYEELLEKERGVLT 533

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  I +D   ++F  F         Q  G GLGL+I    +++ GG +  +S+ 
Sbjct: 534 FKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSMMGGKLVATSTK 593

Query: 779 EGVTTINCRI 788
              T     I
Sbjct: 594 GVGTCFEFSI 603


>gi|323343405|ref|ZP_08083632.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella oralis ATCC 33269]
 gi|323095224|gb|EFZ37798.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella oralis ATCC 33269]
          Length = 880

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 4/238 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R    K     +A   K  F  ++S+ELR+PLT I    + +   +  +L  +Q   ++ 
Sbjct: 356 RTAVMKRRMEEEATNAKLQFFTNISHELRTPLTLIADPVEHIIDDE--NLTRQQRTMLQI 413

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +  IL  LV +ILD   +  G M L  S   L+D L +     A    +  I +++ 
Sbjct: 414 VRRNVNILTRLVGEILDFRKIQNGKMTLTLSDFNLSDCLKQWIDVFAATARKKKIALELE 473

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               +    AD  ++ +I   +LSNA+ F+ +G  + LKAA D       V + G  I +
Sbjct: 474 CSDDI-RMRADIYKVERICYNLLSNAVKFTQEGGRITLKAATDGDKVSICVTDTGMGIAK 532

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D    +F RF          G G+GL+IV+SF  LH G   + S +   TT    +P 
Sbjct: 533 DELSRIFERFYQVKDSYG-GGTGIGLAIVKSFAELHHGTAVVDSEEGKGTTFTVTLPL 589


>gi|298375314|ref|ZP_06985271.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
 gi|298267814|gb|EFI09470.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
          Length = 771

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 133/249 (53%), Gaps = 5/249 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +N+      E +L        ++D +K  F+ ++S+E+R+PL  I+GF+ LL  S +  
Sbjct: 516 CLNIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLL-NSDMPL 574

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +++++++ I+ +S +LL L+NDILDL+ +++G M  +Y  + L+ L+ ++  +    
Sbjct: 575 EPEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLM 634

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI 720
           M E  + +K+    +     +D  RL Q+ +  ++NA+ F++KG   +  + + D    +
Sbjct: 635 MPE-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 693

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SVK+ G  IP+D  + VF RF       Q  G GLGL+I +S ++   G +S+ S    
Sbjct: 694 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ--GTGLGLAICQSIVHTFHGSISLESEVSV 751

Query: 781 VTTINCRIP 789
            +     +P
Sbjct: 752 GSKFTISLP 760


>gi|225018277|ref|ZP_03707469.1| hypothetical protein CLOSTMETH_02215 [Clostridium methylpentosum
           DSM 5476]
 gi|224948974|gb|EEG30183.1| hypothetical protein CLOSTMETH_02215 [Clostridium methylpentosum
           DSM 5476]
          Length = 1192

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 113/567 (19%), Positives = 218/567 (38%), Gaps = 86/567 (15%)

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLT------VAI 319
           E G    Y +             +D+S E  + +++   YE        L+         
Sbjct: 371 EDGERYFYCVF------------VDISDEKQLQERVKELYEEELAYFAELSSSTGSIQGR 418

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP---EQLNWKTWKE 376
               Q+R   +       L   ++A  +   S  E +E L ++   P   E++  +  +E
Sbjct: 419 INVTQDRVETY-------LSTSEVAIASVGTSYLETVESLATSAVDPAYGEKIRCQLDRE 471

Query: 377 NIFSVYKSSET--HKDTWHLPN------GQTLHVIVTSNPRGGTIWMFE---NLTVQVDL 425
            +   Y + +   H +     N      G T ++    NP  G I +F    ++T Q   
Sbjct: 472 KVLGDYAAGKVDYHFEFLRRRNDDGAFWGST-NLRTCLNPETGDIIIFFYTFDITEQK-- 528

Query: 426 ETKYNTLVKVQGETIDHLS-EGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
                 L ++    I  L  + +       G  +L +                G   + I
Sbjct: 529 ------LQEILLSKITQLGYDIIIEIDLQQGTHRLVSFQSERTDSISPR----GEFQKEI 578

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGT----------LELLSDSVLEYSIIPL 533
            A    + +++   + F  +   FD  +K L+             E  S  V  + +  +
Sbjct: 579 RAIAEEHMDQASRQEYFQKL--DFDYMKKHLEKEDSYTFVVEIKGEDGSMRVKRFQVFWI 636

Query: 534 PN--AQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                +  +   +VTD VR E+     L     A  +A+  K+ F+  +S+E+R+P+  I
Sbjct: 637 DRDLERVCIARADVTDVVRQEQRQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNAI 696

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG + +   S     + +    +  I  SS  LL+L+NDILD++ +++G + L    I +
Sbjct: 697 IGMSTIAAQSIGD--DEQVEDCISKIGISSRFLLSLINDILDMSRIESGKLLLKSDKIPI 754

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            + L+ +      +     +  + I D  L   ++ D  +L QI   ILSNA+ F+ +G 
Sbjct: 755 EEFLSGISSICYAQAAAKGVEYECIVDPVLDDYYIGDTMKLQQILINILSNAIKFTGEGG 814

Query: 707 TVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLS 759
            V   A+     +++ +  F + + G  + E+    +F  F   +        G GLGL+
Sbjct: 815 KVTFSASQRRKTKNDAELRFIINDTGVGMSEEFLPHIFEPFSQESTGTTALYGGTGLGLA 874

Query: 760 IVESFINLHGGHVSISSSDEGVTTINC 786
           I ++ ++L  G +++ S     T    
Sbjct: 875 ISKNIVDLMDGKITVRSIKGIGTEFTV 901


>gi|253565691|ref|ZP_04843146.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945970|gb|EES86377.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 812

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 102/541 (18%), Positives = 222/541 (41%), Gaps = 32/541 (5%)

Query: 269 LEHGNNKS----YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
           +  G  K     Y+    L +     + + + KE  ++ +     +I  N+ V + ++++
Sbjct: 278 IVDGYRKWNSEDYQWFSSLANIISICMELRMIKERVMHSEKLFH-DIFTNIPVGLELYNK 336

Query: 325 NRYLQFHNRSFVELWE-------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
              L   N   +E++        I L    +     ++ E LR+       L +     +
Sbjct: 337 EGMLLDCNNRNLEIFGVGDKSRIIGLNLFESPNMTRDIHESLRAGRPGTFHLKY-----D 391

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
                +  ++ +      + ++L +    +     + +  + T + +  +K +       
Sbjct: 392 FDEERRLFQSERRGVMDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFS 451

Query: 438 ETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              D+   G A     D         +R+L ++ +  L+    I +      R       
Sbjct: 452 IISDYSKVGYAKINLLDHTGFAVRQWYRNLGESHDTPLADIIGIFSHMHPDDRKSVLDFY 511

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFVNVTDSVRA 551
               A     FD + +          + + + S++     P P  + +    ++T     
Sbjct: 512 EKAKAGTERFFDGDLRIRPADGSDRWNWIHKSSMVTAYQSPNPRLELVEVNYDITVQKET 571

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    +   +++ +K++F+ ++S+E+R+PL  I+GF+DLL T       ++Q ++  
Sbjct: 572 EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMT---VDDPAEQEEFRR 628

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++T+LL L +DI+DL+ +DAG  +     + L      + Q +  K+ E  + +++
Sbjct: 629 TIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPE-GVELQI 687

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729
             D  L ++  AD   L Q+ +  +SNA+ F+ +G T+ +    D        V++ G  
Sbjct: 688 DEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRG-TITVGYRIDARQQLEMFVEDTGIG 746

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I  +  ++VF+RF+        +G GLGL + +S I   GGH+ + S     +     +P
Sbjct: 747 ISIENQEAVFDRFMKVDSF--VQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804

Query: 790 S 790
           +
Sbjct: 805 A 805


>gi|229590584|ref|YP_002872703.1| putative two-component system sensory histidine kinase [Pseudomonas
           fluorescens SBW25]
 gi|229362450|emb|CAY49356.1| putative two-component system, sensory histidine kinase
           [Pseudomonas fluorescens SBW25]
          Length = 464

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 165/416 (39%), Gaps = 52/416 (12%)

Query: 427 TKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +  TL+K   +Q    +            G I++ N     +       +       +I
Sbjct: 38  KRQKTLLKTGALQDAIFNSAYFSSIATDEKGVIQIFNVGAERMLGYAAADVVNRITPADI 97

Query: 484 ---------AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIP 532
                    AA  S   +        A +  +        + T      S L    S+  
Sbjct: 98  SDPVELITRAAALSLELDTPITPGFEALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTA 157

Query: 533 LPNA----------QTMLTFVNVTDSVRA--ERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L N            T  T     ++ R   ERAL EKN  L  A  +K+ F+  +S+EL
Sbjct: 158 LRNRYDTIIGYLLIGTDNTARKQEEAERKGFERALEEKNLELEHASHMKSEFLATMSHEL 217

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  +IGF++ LK   +G ++  Q +Y+  I  S   LL+L+NDILDL+ V+AG+M+L
Sbjct: 218 RTPLNAVIGFSEALKDGLVGEMSDTQREYIGDIFTSGQHLLSLINDILDLSKVEAGMMEL 277

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               + L  LL      +  K   + I++K+ S   LG    D ++  QI   +L+NA+ 
Sbjct: 278 ELEAVELAGLLANSLLIVREKAALHRIQLKLESPEDLGCLALDLRKTKQIVYNLLANAVK 337

Query: 701 FSSKGSTVILKAAR------------------------DNGDFIFSVKNNGSSIPEDMCK 736
           FS  GS+V L   +                               SV + G  I ED   
Sbjct: 338 FSEHGSSVTLTVRQVPREQVGQIPGEWPVYNFALPDSPHQQFLELSVSDTGIGIAEDDMG 397

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F  F         +  G GLGL++V+   +LHGG V+++S +         +P 
Sbjct: 398 KLFKAFSQIDSSLARKFEGTGLGLAMVKQLTDLHGGSVAVASREGCGARFVAWLPL 453


>gi|206601622|gb|EDZ38105.1| Putative periplasmic sensor signal transduction histidine kinase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 506

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 3/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL E    L     +K+ FV   S+ELR+PLT+I GF  +L   KLG L  +Q   +  
Sbjct: 247 RALNEMARKLGDLSRMKSEFVTIASHELRTPLTSIRGFLSMLNRGKLGPLTPEQQNGLAI 306

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L+ LVN +LDL  +++G ++ +   + L  LLN ++        + NI  ++I
Sbjct: 307 VQEEVDHLVELVNGLLDLGRIESGQVRFDIQEVDLLALLNRIRSRQEAMAEQGNITFRLI 366

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D +L      D  ++ QI   +L NA  F+  G  V L+ +R +      V++ G  I 
Sbjct: 367 LDPELPPKIRTDPGKVAQILDNLLGNAFKFTPAGGEVELEVSRKDCQLEIEVRDTGIGIT 426

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F +F   A  +   R G+GLGL+I    +    G + +  +    T     +P
Sbjct: 427 QESLPFLFEKFYQVAPFNNRTREGLGLGLAITRGIVLNMEGEIHVRPNTPRGTVFRVTLP 486

Query: 790 SK 791
            +
Sbjct: 487 FQ 488


>gi|253702042|ref|YP_003023231.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776892|gb|ACT19473.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 718

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 125/261 (47%), Gaps = 12/261 (4%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +   +   +   A+R   L E       A   K+ F+ ++S+E+R+P+  +IG   LL
Sbjct: 182 DMLQEHMQNLEMKVAQRTTELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLAKLL 241

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L+  Q  Y+E +S  +  LL ++N+ILD++ V+AG++ L      L   L+  
Sbjct: 242 MET---PLDEVQQGYMESLSDCAENLLTIINEILDVSKVEAGMITLEAVVFDLRRFLDRS 298

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q    +  +  +R+ + +D  L    V D  RL Q+ + +L NA+ F+ +GS  +  A 
Sbjct: 299 LQPFVLRGQKKGVRVHLEADSGLPELMVGDPVRLRQVLANLLGNALKFTQQGSITLTAAL 358

Query: 714 RDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
             +G+      FSV + G  I  +  + +F +F        R   G GLGLSI +S + L
Sbjct: 359 TGSGENRVALKFSVADTGIGIAAEAMEVIFEKFSQADSSTTRLYGGTGLGLSISKSLVEL 418

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG +S+ S+    +  +  I
Sbjct: 419 MGGELSVQSTLGEGSVFSFSI 439


>gi|118476618|ref|YP_893769.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196044360|ref|ZP_03111596.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225862944|ref|YP_002748322.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|229183305|ref|ZP_04310534.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
 gi|118415843|gb|ABK84262.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196024999|gb|EDX63670.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225788896|gb|ACO29113.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|228600175|gb|EEK57766.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
          Length = 896

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMATSMQQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V +   +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VENSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|295094189|emb|CBK83280.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 581

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  ++VT     E  L++       A + +  F+ ++S+E+R+P+  I+G   L  T   
Sbjct: 174 MVVIDVTKQKETEEKLSKAIVDANAAYKTQAEFLANMSHEIRTPINGILGMLQL--TLMA 231

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L +     +      +  LL L+NDILD++ ++AG  K+   T  +   + +   +  
Sbjct: 232 EDLQADYRDNLITAKNCADTLLRLINDILDISKLEAGKYKIKEETFDIRTAIEDTVAAQV 291

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                  +++       +   V  D QR+ Q+ + +LSNA+ F+S+GS  +  A+ D+GD
Sbjct: 292 PIATNKGLQLDCSFGSNIPKLVRGDGQRIQQVLNCLLSNAIKFTSEGSVRVKIASMDDGD 351

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                  +V + G  I E     +F RF  V  +   +  G GLGL I +  + L GG++
Sbjct: 352 NKIKIRMAVADTGIGISEANMSKLFIRFSQVDASDTRKYGGSGLGLVITKQIVELMGGNI 411

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S ++  +T    IP K
Sbjct: 412 TVQSKEDIGSTFIVEIPLK 430


>gi|47564964|ref|ZP_00236008.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
 gi|47558337|gb|EAL16661.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
          Length = 896

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVDFT 597

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-------STVILKAARD-----NG 717
           V  SD     F  D +R+ QI   +LSNA  F+ KG       S      + D       
Sbjct: 598 VKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 879

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 194/490 (39%), Gaps = 51/490 (10%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS---NDELLEFLRSANKLPEQLN 370
           +L + + I D+N        + + L       +   P          + +   +L  + +
Sbjct: 170 SLPMGVTILDENG------HALISLTG-PEGNIKAEPRWMQERSWFGYTQGFRELALKKS 222

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------D 424
             +   ++          +    L     L+ I+ +   G  ++    +  +        
Sbjct: 223 LPSSSLSVVYSVPVDVVLERIRIL----ILNAILLNVLVGAALFTLARMYERRIFIPAES 278

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
              +     +   + +     G+ +    DG   LSN     L  T  N L+     R  
Sbjct: 279 DAQRLEEHEQFNRKIVASAPVGICILRTVDGINILSN----ELAHTYLNMLTHEDRQRLT 334

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
              C +  N       F  ++TS +    +LQ +           +I            V
Sbjct: 335 QIICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI---------CVLV 375

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L 
Sbjct: 376 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LP 432

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + V  ++ SS++LL +++DILD + +++  +K+        ++++ +  +    + 
Sbjct: 433 KGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVV 492

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L   RD+      
Sbjct: 493 RKQLGLYCFIEPDVPVAMNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVQRDSDYLSIR 551

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S    
Sbjct: 552 VRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGM 611

Query: 781 VTTINCRIPS 790
            +    RIP 
Sbjct: 612 GSQFTVRIPL 621


>gi|302381354|ref|YP_003817177.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302191982|gb|ADK99553.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 1138

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +A  +A+  K+ F+  +S+E+R+PL  I+  +D+L TS    L  +Q +Y + I
Sbjct: 261 ELVVARDAAEQANAAKSDFLAVMSHEIRTPLNGILALSDMLATS---DLPQRQQRYADVI 317

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S   LL ++NDILD + V+AG M L    + L D   +V    + K     + + V  
Sbjct: 318 SKSGKSLLGIINDILDFSKVEAGKMDLEIVEVDLADAAEDVASLFSEKAASKGLDLAVFV 377

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSI 730
           D +L   + D  RL Q+   +++NA+ F+  G  V++   RD  D      +V + G  I
Sbjct: 378 DPRLPQVLGDPTRLRQVIGNLVNNAIKFTDLGG-VLIAIDRDPEDPRRIRVAVHDTGPGI 436

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P D   ++F  F        R   G GLGL+I +  +   GG  S+SS+    +T     
Sbjct: 437 PADKLPTLFEAFTQADQSTTRTHGGTGLGLAICDRLVRSMGGVWSLSSTVGEGSTFAFSA 496

Query: 789 PS 790
           P 
Sbjct: 497 PL 498


>gi|296120393|ref|YP_003628171.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296012733|gb|ADG65972.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1561

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 126/788 (15%), Positives = 260/788 (32%), Gaps = 90/788 (11%)

Query: 56   NETYSFLSEICDQLSKYHSLLTENNCLTIVWD-----GKDETPEIIGQLHQRIDIPQTDT 110
                + L+ +  +     ++L  N+   ++WD     G     E       R        
Sbjct: 667  ARKQAELARLEVEERYRLAILATND---LIWDLDPVAGTVAWSEQYAATLGRTPESSDSL 723

Query: 111  DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG------------R 158
                   W+   H     +    L            T +   ++ +G            R
Sbjct: 724  QW-----WIDRIHPADRERTARSLSAAVDG-TATYWTADYEFLRADGVWASIHDRAYIAR 777

Query: 159  VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
             +   A      + G   ++ +      ++     + + + +     V+ +D+ G  L A
Sbjct: 778  DAAGHA----RRVVGAMQDVTDRKRAETEVRRTAELLRAVAEGTSDAVFVKDRDGKYLLA 833

Query: 219  NISYKKNTETEGIVFQKAIG---------ESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
            N +     +  G   ++ +G         E  +L  E  ++ M S          T + +
Sbjct: 834  NQA---ACQFMGKPLEQVLGRDDSEWFDAEGARLVLEVDREVMRSGLVRTSEETLTANYV 890

Query: 270  EHG--NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
                  +K+     + N  G  GI+ D++        L      + +   +I   + +  
Sbjct: 891  TRTYLASKAPYRDELGNVIGIIGISRDITARKEAERMLRLNQFSVDHAVDSIFWINASSE 950

Query: 328  LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            + + N +           +      D         N LPE   W    E +    + S T
Sbjct: 951  ILYVNNAACRTLGYTRDEMLGKTVPDI------DPNFLPEA--WPAHWEELRC--RGSFT 1000

Query: 388  HKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             +      +G+TL   VT N      +     +  +++ +   E +    +     T++ 
Sbjct: 1001 FESDHVTKDGRTLKTEVTVNYLQYEGQEYNCAIMRDISERKQAELEMRQSLSRMRATLES 1060

Query: 443  LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR------YYNESDG 496
             ++G+ V   +GR+   N  F S+W+  E  ++       IA++              D 
Sbjct: 1061 TADGILVVDLEGRVLDYNRRFISIWRFPEEMIAEANKSDIIASSDQHQAVQKMLAQLKDP 1120

Query: 497  WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                  +   + +  +S    LE     ++E    P       +  V     V  +R L 
Sbjct: 1121 EGFVRRVQEMYQNREESSFDVLEFKDGRIVERFSQPQWMDGQPVGRVLSFRDVSEQRKLE 1180

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            E+    +K + +   F   ++++  + LT I  + +LL   K    N    + V++I   
Sbjct: 1181 EQLRQSQKMEAV-GQFAGGIAHDFNNLLTVINCYCELLLDQKSQPQN--WRESVQHIRDE 1237

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
                  L   +LD +             I LND++   ++ +   + E  I++ +  D  
Sbjct: 1238 GLRAAQLTKQLLDFSR----RSHFQPRVIHLNDVIEGSQKLLRRLIGER-IQLILHLDPL 1292

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---------------DNGDFIF 721
            L +  AD   L Q+   ++ NA D    G  + ++ +R               +      
Sbjct: 1293 LPAIKADTTHLDQVLMNLVVNARDAMPAGGRLTIRTSRLSPQDARQFLTNISLETPYVQL 1352

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             V + G  +  D+   +F  F +    G   G GLGL++V   +  H G + +++     
Sbjct: 1353 EVADTGIGMSADVQARIFEPFFTTKEIGS--GSGLGLAVVHGIMQQHDGQIHVTTEPGVG 1410

Query: 782  TTINCRIP 789
            TT     P
Sbjct: 1411 TTFRLLFP 1418



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 135/426 (31%), Gaps = 35/426 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  + G   ++ E     + L      F+ L D++  +VW     G + + N    K T
Sbjct: 400 RVSQIIGTAEDITERKRVEQSLRESEQRFRELADAIPQIVWVAALDGGLTYLNA---KAT 456

Query: 227 ETEGIVFQKAIGESRK--LFKEEIKKRMIS-SSALEKNFCETVSTLE---HGNNKSYKIV 280
           E  G+   +  G S +  +  E++   +   ++ LE+     +        G  + +   
Sbjct: 457 EYTGVGMDQLTGWSWEQVIHPEDVPNAIERWTATLEQELPRDIELRIRQTDGAYRWHISR 516

Query: 281 RVLNSFGEAGIAI------DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ--FHN 332
           +V        I        D+         L  +   L     A+ I D   ++     N
Sbjct: 517 QVPIRDASGAIVRWYGTCTDIDDLKRTQAALQQSESTLE---EAMRIGDMGSWIIDLVQN 573

Query: 333 RSFVELWEIDLAF--LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           R+    W  D  F  L   P  D+  + L      P   +            ++S   + 
Sbjct: 574 RA---TWS-DEGFRLLGYVPGVDQPSQELFLNGVYPADRDTVRHDLANAIATQTSLNSEF 629

Query: 391 TWHLPNG--QTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +  P+G  + LH    +           + + +++T +   E     + +     I   
Sbjct: 630 RFVRPDGQLRWLHSRARATSDQHGRPIQFVGVTQDITARKQAELARLEVEERYRLAILAT 689

Query: 444 SEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA- 501
           ++ +    P  G +  S     +L +T E+  S    I  I          S    +   
Sbjct: 690 NDLIWDLDPVAGTVAWSEQYAATLGRTPESSDSLQWWIDRIHPADRERTARSLSAAVDGT 749

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           A   + D E     G    + D             + +    +VTD  RAE  +    E 
Sbjct: 750 ATYWTADYEFLRADGVWASIHDRAYIARDAAGHARRVVGAMQDVTDRKRAETEVRRTAEL 809

Query: 562 LRKADE 567
           LR   E
Sbjct: 810 LRAVAE 815



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/416 (12%), Positives = 124/416 (29%), Gaps = 27/416 (6%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
           + E +      ++    ++  + +     + VW    +G + W+   +      +  V Q
Sbjct: 150 HLERSGAEQALRESERQLADAQRIARIGSW-VW-EPSSGKVWWSRGVFA-LFGVDPQVVQ 206

Query: 235 KAIGESRKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
            +     +L   +     ++      +  ++   +       G         V     + 
Sbjct: 207 PSFQAFLQLLHPDDLPTAVARVDAMLAGADRFEDDLRIIRPDGQMIWLHSRAVATRDADG 266

Query: 290 ------GIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFD-QNRYLQFHNRSFVEL 338
                 G   D++       ++  + + +        + I +FD Q + + + N   +  
Sbjct: 267 NILRVEGTDQDITARKLAAAEVQASQKFVKAVAETSPLTIYVFDLQQQSITYSNYYLMRD 326

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW-----KENIFSVYKSSETHKDTWH 393
                  +    S  EL E +   +        + W     ++ + + Y+  + H + W 
Sbjct: 327 LGFTPEAIQGR-SWAELAELVHPIDFANVTTLLQRWDTVDDQQVLLAEYRLQDVHGN-WR 384

Query: 394 LPNGQTLHVIVTSNPRGG-TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
               +      T + R    I   E++T +  +E       +   E  D + + V V   
Sbjct: 385 WFVSRDRVFERTPDGRVSQIIGTAEDITERKRVEQSLRESEQRFRELADAIPQIVWVAAL 444

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           DG +   N           ++L+  +  + I         E     L   +    +   +
Sbjct: 445 DGGLTYLNAKATEYTGVGMDQLTGWSWEQVIHPEDVPNAIERWTATLEQELPRDIELRIR 504

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              G         +          +   T  ++ D  R + AL +    L +A  I
Sbjct: 505 QTDGAYRWHISRQVPIRDASGAIVRWYGTCTDIDDLKRTQAALQQSESTLEEAMRI 560



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 64/466 (13%), Positives = 134/466 (28%), Gaps = 35/466 (7%)

Query: 118 WLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
           WL              LR EG   D+ A       ++   +   + A    L++     +
Sbjct: 253 WLHSRAVATRDADGNILRVEGTDQDITARKLAAAEVQASQKFVKAVAETSPLTIYVFDLQ 312

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
               T     L   +             +      G   WA ++ +     +       +
Sbjct: 313 QQSITYSNYYLMRDLGF-------TPEAI-----QGR-SWAELA-ELVHPIDFANVTTLL 358

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
                +  +++         +  N+   VS      ++ ++           G A D+++
Sbjct: 359 QRWDTVDDQQVLLAEYRLQDVHGNWRWFVSR-----DRVFERTPDGRVSQIIGTAEDITE 413

Query: 298 EITVNDQLTHTYEILHNLTVAI--AIFDQ--NRYLQFHNRSFVELWEIDLAFLATNPSND 353
              V   L  + +    L  AI   ++    +  L + N    E   + +  L T  S +
Sbjct: 414 RKRVEQSLRESEQRFRELADAIPQIVWVAALDGGLTYLNAKATEYTGVGMDQL-TGWSWE 472

Query: 354 ELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           +++   +   +  +    L  +  ++    + ++   ++  WH+   + + +   S    
Sbjct: 473 QVIHPEDVPNAIERWTATLEQELPRDIELRIRQTDGAYR--WHI--SRQVPIRDASGAIV 528

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKT 469
                  ++      +           E +     G  +      R   S+  FR L   
Sbjct: 529 RWYGTCTDIDDLKRTQAALQQSESTLEEAMRIGDMGSWIIDLVQNRATWSDEGFRLLGYV 588

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLE 527
                       N      R     D  +  A   TS + E + +   G L  L      
Sbjct: 589 PGVDQPSQELFLNGVYPADRDTVRHDLANAIAT-QTSLNSEFRFVRPDGQLRWLHSRARA 647

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            S       Q +    ++T   +AE A  E  E  R A    N  +
Sbjct: 648 TSDQHGRPIQFVGVTQDITARKQAELARLEVEERYRLAILATNDLI 693


>gi|254236999|ref|ZP_04930322.1| hypothetical protein PACG_03025 [Pseudomonas aeruginosa C3719]
 gi|126168930|gb|EAZ54441.1| hypothetical protein PACG_03025 [Pseudomonas aeruginosa C3719]
          Length = 1417

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 200/521 (38%), Gaps = 38/521 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLT-VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +   +         +L   + V+I   D++  +   N     +       +    S  
Sbjct: 479 AERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS-P 537

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVT------- 405
            LL   R      ++L  + ++  +     + +ET + T+   +G  L V ++       
Sbjct: 538 TLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRDE 597

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +    G + +  ++T   + E +            D    G+  +         N     
Sbjct: 598 AGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMCE 657

Query: 466 LWKTE---------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSL 514
           L+                    H  ++  T +      +G   +  I      D   + +
Sbjct: 658 LYGQPLALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGGIRFI 717

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   ++  D+       PL   Q     +++T   + +  L E  E    A   K+SF+ 
Sbjct: 718 QAGAQVERDA----DGNPL---QVTGINIDITSDQQLQARLREAKEQADAASAAKSSFLA 770

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  ++G   L + +    LN +Q  Y++  S+++T LL L+NDILD + ++
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQT---DLNERQRDYLDKASSAATSLLGLLNDILDYSKIE 827

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG + L      L  L+ ++   ++    + ++ +    D +L  + V DR RL QI   
Sbjct: 828 AGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILIN 887

Query: 694 ILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +  NA+ F+++G   V L+    +   +     V + G  I  +  + +F  F       
Sbjct: 888 LAGNALKFTARGHVLVGLRRLAHDAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEAST 947

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL I +  ++L GG + + S+    +     +
Sbjct: 948 SRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWFDL 988


>gi|325105218|ref|YP_004274872.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324974066|gb|ADY53050.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 787

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 10/247 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R   AL    +        K+ F+  +S+E+R+PL ++IG T LL  +   S    Q 
Sbjct: 397 SHRVSFALRRAKKEAETGLIAKSEFLSTMSHEIRTPLNSVIGVTHLLLKN---SPREDQK 453

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + ++ +  S+  LL +VNDILD   ++AG +      + ++ L   +  S  +   +  I
Sbjct: 454 EQLDIMLFSANNLLAIVNDILDYNKIEAGKISFENIKMDISKLAQNLISSQLSFADDKGI 513

Query: 668 RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFS 722
            +++  D  L      D  RL QI S ++ NA+ F+ KG      V+  +  +     F 
Sbjct: 514 ELRLNLDKNLSPHLKGDPTRLHQILSNLVHNAIKFTQKGFVELGIVVKNSNDNKQTLYFY 573

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK++G  I ++    +F++F        R   G GLGL+I +  + L    + + S +  
Sbjct: 574 VKDSGIGISKEKQDIIFDQFTQADSSTSRSFGGTGLGLAICKRILELQHSELRLESEENK 633

Query: 781 VTTINCR 787
            +T    
Sbjct: 634 GSTFFFT 640


>gi|240278708|gb|EER42214.1| sensor histidine kinase/response regulator [Ajellomyces capsulatus
            H143]
          Length = 2390

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ +VS++LR+P+  +IG ++LLK +   +L+ +Q  YV
Sbjct: 1861 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---NLDREQDGYV 1917

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + L + + EV +++     +  ++  
Sbjct: 1918 ESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTI 1977

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFS--V 723
               DG   +   + D  RL QIF  +LSN+  F+ KGS V +KA     D+G    +  V
Sbjct: 1978 EDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGS-VTVKAKAADEDDGRIRITCKV 2036

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I  +    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 2037 ADTGIGISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGV 2096

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2097 GTTVTFTL 2104


>gi|224370167|ref|YP_002604331.1| PhoR [Desulfobacterium autotrophicum HRM2]
 gi|223692884|gb|ACN16167.1| PhoR [Desulfobacterium autotrophicum HRM2]
          Length = 505

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 151/378 (39%), Gaps = 20/378 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +       NT        ++ L  GV V    G + L NPA   L   + ++  PG   
Sbjct: 137 ERRRTLADLNTEQSRIHTILESLPNGVLVTDSQGEVVLLNPACYKLLHIDTDKKVPG--- 193

Query: 481 RNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQ 537
           +  A +   Y N+ +   L   I    + D        +++ +++ L     P+     +
Sbjct: 194 KKPAGSICEYVNDEEVCALVMDISRGRYIDYNDIPSKEIKISNETYLLVLCRPVLGEKKE 253

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            M T VN+ D              ++  D++K+ FV  VS+ELRSPL+ I     ++   
Sbjct: 254 CMGTVVNIMDIS-----------TIKVLDQLKSEFVAKVSHELRSPLSTIHEQLKMVMGG 302

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              ++       +      +  L++ + D+LDL+ ++AG+       + L+DLL  + + 
Sbjct: 303 LGQTIGGDDQHLLSRAREKTGGLISTIGDLLDLSRIEAGMEIKELKEVQLDDLLKAICEF 362

Query: 658 IATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +  +       +        +     D   L  +F  ++SNA+ ++ +  T+ +      
Sbjct: 363 LEVRAAAKQQTLTFTPPETPVPPIKGDPLALESVFGNLISNAIIYTPEKGTIQVDCTVTG 422

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
            +    VK+NG  I       +F RF    +   R   G GLGL IV+  ++   G++ +
Sbjct: 423 TNLRVRVKDNGFGIDARYMDKIFERFYRIKNERTRYITGTGLGLPIVKGIVDAMNGYIDV 482

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     TT    +P K+
Sbjct: 483 ESEVNQGTTFTVILPLKQ 500



 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             +N + +  + IL +L   + + D    +   N +  +L  ID  
Sbjct: 143 ADLNTEQSRIHTILESLPNGVLVTDSQGEVVLLNPACYKLLHIDTD 188


>gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
 gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
          Length = 1014

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 396 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 440

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 441 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 499

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 500 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 559

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 560 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 616

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 617 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 676

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 677 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 736

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 737 GGSIEIDSLPDFGTTVTVALPLRE 760


>gi|153829850|ref|ZP_01982517.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39]
 gi|229528389|ref|ZP_04417780.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           12129(1)]
 gi|148874651|gb|EDL72786.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39]
 gi|229334751|gb|EEO00237.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           12129(1)]
 gi|327485743|gb|AEA80149.1| Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           LMA3894-4]
          Length = 857

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 156/379 (41%), Gaps = 26/379 (6%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +   +           
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--IQFLREDAQNHFL 400

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +         ++   D  + + T  D        +  ++   ++            +
Sbjct: 401 FEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISI----------I 450

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T    AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +  
Sbjct: 451 TQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT-- 508

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + +   
Sbjct: 509 -PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYR 567

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++     GD
Sbjct: 568 PLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGD 626

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                +  V + G  I E     +F  F+       R   G GLGL+IV S + +  G +
Sbjct: 627 PLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQL 686

Query: 773 SISSSDEGVTTINCRIPSK 791
            +SS     T    ++P +
Sbjct: 687 HVSSEYGIGTRFEIQLPIE 705


>gi|222094734|ref|YP_002528794.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221238792|gb|ACM11502.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 896

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG-------STVILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KG       S      + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|269963086|ref|ZP_06177422.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832218|gb|EEZ86341.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 481

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E   +A++ K+ F+  +S+E+R+PL +++G  D+L+ S   +L   QS+ +  +
Sbjct: 105 QLAKAREEAERANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQS---TLTEDQSEVLNQM 161

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL +++DILDL+ +++G   LN     L+D +  +           N+  +   
Sbjct: 162 ERSADLLLAIISDILDLSKIESGSFHLNEQWTDLSDAVTLIISQQKQVATAKNLSFEFDC 221

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +  K   +  D  RL QI   ++ NA  F+  G  + +     + + + SV + G  IP+
Sbjct: 222 NLDKNKQYWIDSTRLSQILFNLIGNASKFTDFGG-IDISVIEKDSELVISVADTGIGIPK 280

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  F        RR  G GLGL+I +  + +  G +S+ S +   +    RIP
Sbjct: 281 AKVGHLFTAFHQGDSSITRRFGGTGLGLAITKHLVEMMRGTISVKSEENVGSHFKIRIP 339


>gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei BCC215]
          Length = 927

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 309 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 353

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 354 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 412

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 413 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 472

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 473 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 529

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 530 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 589

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 590 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 649

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 650 GGSIEIDSLPDFGTTVTVALPLRE 673


>gi|60680227|ref|YP_210371.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
 gi|60491661|emb|CAH06413.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
          Length = 389

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVR---AERALTEKNEALR 563
           E +      E      LE   IP     N + +    ++    R    E  LT   E   
Sbjct: 102 ELRFWAKKREGFVLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAE 161

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K++ + ++++E+R+PL  I+GF  LL    +     +Q +Y+  I +++  LL L
Sbjct: 162 EANRLKSALIANMNHEIRTPLNAIVGFASLLS---IIDDEKEQQEYIGLIQSNTEHLLRL 218

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND++DL+ +++G+M +  S +VL+ L+ E++ +   K   NN+ +    +        D
Sbjct: 219 MNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNAHIYTD 278

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R RL+QI   +L NA+ F++KG+       ++NG   F V + G  IP D  + +F RFV
Sbjct: 279 RDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFV 338

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 Q  G+GLGLS+ +  I    G + + S     +T    IP
Sbjct: 339 KLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|85710707|ref|ZP_01041771.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
 gi|85687885|gb|EAQ27890.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
          Length = 609

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 14/313 (4%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R+I          S     F A +   D   +  Q T      +++EY     P A    
Sbjct: 138 RDIVENAVEQSRRSGLPFEFRARLIRADGSVRHTQST------ALVEYGEDGAPVA-LFG 190

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            F + TD    +  L           E K+SF+  +S+E+R+P+  ++GF +LL  S   
Sbjct: 191 VFCDRTDEEVMQSELRTARNEANAMAEAKSSFLAKMSHEIRTPMNGVMGFAELLSRS--- 247

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q+++VE I  S   L  L+NDILDL+ +++G  ++      ++ L+    Q    
Sbjct: 248 DLSHEQARHVELIRESGKALQTLLNDILDLSKIESGEFRVKEEPANISHLVKRTIQLFEP 307

Query: 661 KMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              E  I +       L  F + D  RL Q+ S +++NA+ F+ +G  V +         
Sbjct: 308 LAREKVIGLSSQVSDTLPQFAMLDALRLRQVLSNLVANAIRFTDRGG-VSVIVEPSPSGI 366

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F+V++ G+ IPE+M +++F+ F  +   +  +R G GLGLSI      L GG + + S+
Sbjct: 367 AFTVRDTGTGIPEEMIEAIFDPFSQSDGGNSTRRGGTGLGLSISRQLAELMGGELDVIST 426

Query: 778 DEGVTTINCRIPS 790
               ++    +P 
Sbjct: 427 VGLGSSFILTLPL 439


>gi|90425981|ref|YP_534351.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90107995|gb|ABD90032.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 1022

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 137/314 (43%), Gaps = 22/314 (7%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             T SR    S   +L       F   R  +   L L+   V+  ++           F 
Sbjct: 230 PHTSSRTVTLSSDVELEIEFAEQFPATRSLIIFALGLIGIFVISCTL-----------FT 278

Query: 544 NVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
               S RA+ R L         A+E K+ F+ ++S+E+R+PL  ++G  D+L  +    L
Sbjct: 279 MFARSARAQNRILKHAVRRAEAANEAKSEFLANMSHEIRTPLNGVLGMADVLMRT---DL 335

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q  Y + I  S ++L+ ++ND+LD+A +D+G + +    + L   L E       + 
Sbjct: 336 TPVQRNYAQLIVTSGSLLMTILNDVLDMAKLDSGQLAIKPCKVELQLQLKEAASFYFAQA 395

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---G 717
            E ++ + +     +      D  RL QI   ++ NA+ F+SKG   VI+     +   G
Sbjct: 396 REKDLELVLDVAPDVPRHVQLDPMRLRQILGNLIGNALKFTSKGGVAVIVSYQHQDEKSG 455

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               SV + G  + E+    +F RFV      +  R G GLGL+I +   N  GG + ++
Sbjct: 456 RLHISVVDTGIGLTEEQQGKLFGRFVQAEDDGQRHREGTGLGLAICKKLCNAMGGEIGVT 515

Query: 776 SSDEGVTTINCRIP 789
           S     +T +  IP
Sbjct: 516 SEKGVGSTFSFWIP 529


>gi|332525160|ref|ZP_08401337.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332108446|gb|EGJ09670.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 751

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 6/250 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +    ER L  + E   ++   K++F+  VS+E+R+PL  ++G  DL+  +    L+
Sbjct: 350 QRREQAECERRLALEREIAARSSATKSAFLATVSHEIRTPLNAVLGVADLMTAT---PLS 406

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q ++V+    +   L  L++D+LDL  ++AG ++L     VL   L+ V   +  +  
Sbjct: 407 DEQRRHVDVFRHAGQTLAALIDDLLDLGKIEAGRLELVVEPFVLRASLDSVAALLQPRAA 466

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +R  +  D  L ++V  DR+R+ Q  + +L NA+ F+++G   +  A    G   F+
Sbjct: 467 AKGLRFVLDVDEDLPAWVSGDRRRVEQALTNLLGNAIKFTARGEVSLQAARSAAGGVRFT 526

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I       VF  FV    R  R   G GLGL+I  +     GG + + S    
Sbjct: 527 VRDTGIGIAPAQQALVFEPFVQADDRITRDYGGTGLGLAITRATAQQMGGDLRLESRPGV 586

Query: 781 VTTINCRIPS 790
            +T    +P 
Sbjct: 587 GSTFTLELPL 596


>gi|293605362|ref|ZP_06687745.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292816234|gb|EFF75332.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 1116

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 85/344 (24%), Positives = 157/344 (45%), Gaps = 17/344 (4%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           F       E  L  G     + A+  R   +    +          +E ++ Q  L + +
Sbjct: 326 FNRAIGEVERSLLEGAS--EMLASAIRSGQDRTRLESLLEETQRQAEELQTQQEELRVSN 383

Query: 523 D------SVLEYSIIPLPNAQTMLTFVNVTDSVRAER------ALTEKNEALRKADEIKN 570
           +       +L+ S   +   QT L   N     +AE+      ALTEK   L +A + K+
Sbjct: 384 EELEQQSRILQESQARMELQQTELEQTNTNLEAQAEQLLRVQDALTEKARQLTQASQFKS 443

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+ELR+PL + +    LL  +K G+L+++Q +Y + I A+ + LL L+NDILDL
Sbjct: 444 EFLANMSHELRTPLNSTLILAKLLSDNKPGNLSTEQVKYAQTIYAAGSDLLALINDILDL 503

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           A ++AG   +    + +   L  + + +     E  + +++  D  +  +   D +RL Q
Sbjct: 504 AKIEAGQATVEVEQVTIASTLQRLLEPMRPMAVEKGLVLELDIDAAVPATMQTDAKRLGQ 563

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           +   +LSNA+ F+ +GS  +  +        F+V + G  +P +  + +F  F       
Sbjct: 564 VLKNLLSNALKFTERGSVAMRVSRSGRDRVRFAVHDTGIGVPAEQQELIFEAFRQADGST 623

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +  G GLGLSI      L GG ++++S+    +     +P +
Sbjct: 624 HRKYGGTGLGLSISRDLAELLGGKLTVTSTAGQGSVFTLEVPLR 667


>gi|254229957|ref|ZP_04923359.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|151937526|gb|EDN56382.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 811

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 140/346 (40%), Gaps = 29/346 (8%)

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC---SRYYNESDGWDLFAAIITSFDD 509
           D R+++ N   +   +  E  +S    I      C     Y       +    I    DD
Sbjct: 254 DWRMEVVNAKAKVADQVFEQVMSVEGRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDD 313

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            +          +  +++           ++   N          L ++    + +   K
Sbjct: 314 SK----------TGGIIDIDYDSEDEIGQLIDKFNEKTIY-----LEQERIKAQASTNAK 358

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +F+  +S+E+R+P+  ++G   +L  +    L   Q +++  +  S   ++ L+N+ILD
Sbjct: 359 TAFLATLSHEIRTPMNGVLGTAQILLKT---PLTDDQRKHLRTLYDSGDHMMTLLNEILD 415

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
            + ++ G ++   +   +  ++  +K    T   E  +R  V+S    G +   D+ RL 
Sbjct: 416 YSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLRFGVVSHLPTGRWYNNDKARLR 475

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+   +L+NA+ F+ +G  V ++            I +VK+ G  I ++  K +F  F  
Sbjct: 476 QVLFNLLNNAVKFTDRG-IVEVELTEKSSKAGTKLILAVKDTGIGISQEAQKRIFRPFEQ 534

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 RR  G GLGL+IV+      GGHV + S +   TT    I
Sbjct: 535 AESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVGTTFTVEI 580


>gi|262394675|ref|YP_003286529.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|262338269|gb|ACY52064.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 806

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 140/346 (40%), Gaps = 29/346 (8%)

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC---SRYYNESDGWDLFAAIITSFDD 509
           D R+++ N   +   +  E  +S    I      C     Y       +    I    DD
Sbjct: 249 DWRMEVVNAKAKVADQVFEQVMSVEGRIIPFLLLCVLVGYYLLNRYIVEPIVRIAAKIDD 308

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            +          +  +++           ++   N          L ++    + +   K
Sbjct: 309 SK----------TGGIIDIDYDSEDEIGQLIDKFNEKTIY-----LEQERIKAQASTNAK 353

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +F+  +S+E+R+P+  ++G   +L  +    L   Q +++  +  S   ++ L+N+ILD
Sbjct: 354 TAFLATLSHEIRTPMNGVLGTAQILLKT---PLTDDQRKHLRTLYDSGDHMMTLLNEILD 410

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
            + ++ G ++   +   +  ++  +K    T   E  +R  V+S    G +   D+ RL 
Sbjct: 411 YSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLRFGVVSHLPTGRWYNNDKARLR 470

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+   +L+NA+ F+ +G  V ++            I +VK+ G  I ++  K +F  F  
Sbjct: 471 QVLFNLLNNAVKFTDRG-IVEVELTEKSSKAGTKLILAVKDTGIGISQEAQKRIFRPFEQ 529

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 RR  G GLGL+IV+      GGHV + S +   TT    I
Sbjct: 530 AESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVGTTFTVEI 575


>gi|16799393|ref|NP_469661.1| hypothetical protein lin0316 [Listeria innocua Clip11262]
 gi|16412745|emb|CAC95549.1| lin0316 [Listeria innocua Clip11262]
          Length = 610

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +L     L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTLDKPYVLRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFE-MMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKSKGTIIKFTLP 600


>gi|206975598|ref|ZP_03236510.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
 gi|206746060|gb|EDZ57455.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
          Length = 896

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 139/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG-------STVILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KG       S      + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1231

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 141/303 (46%), Gaps = 6/303 (1%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAE 552
            +   +            + L+G  ++L     E  +       QT    +   +   A+
Sbjct: 494 EEQTQILRQQQEELKQMNEELEGQTQILRQQQEELKVSNEELEEQTRALEMRNKELELAK 553

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             + +K E L  + + K+ F+ ++S+ELR+PL +++  +  L  +K  +L+  Q +    
Sbjct: 554 NDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDEDQVESANI 613

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L+N++LDL+ +++G M +N   +VL   + ++      +  +  + + +I
Sbjct: 614 IYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQATKKKLDLDLI 673

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSI 730
               L      D QRL QI   ++SNA+ F+ +G  + L+  R N    +FSV ++G  I
Sbjct: 674 YYEDLPEKIRTDPQRLDQILKNLISNALKFTERG-RIQLEVKRQNSDKILFSVIDSGIGI 732

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE+   ++F  F  V  +   +  G GLGLSI      L GG + + S     +T +  +
Sbjct: 733 PEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSKVNKGSTFSLLL 792

Query: 789 PSK 791
           P +
Sbjct: 793 PIE 795


>gi|268680301|ref|YP_003304732.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618332|gb|ACZ12697.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 551

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 10/251 (3%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +    L    +    A +IK+ F+ ++S+EL++P+  IIG  +LL   K   L  K+ +
Sbjct: 14  QKMMEELKIAIKKTADAHQIKSQFLANMSHELKTPMNTIIGMGELLVHKK---LPEKEQR 70

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  S+  L++++NDILD + ++A  ++L   +  L  LL  + +    +  +  I 
Sbjct: 71  CLHKIVESAHHLMDIINDILDFSKIEANAIELKTVSFDLEKLLLSLSELFRIRAQQKGIE 130

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSV 723
           + +  D      +  D +RL Q+   +LSNA+ F+ KG     V L   +D  + + F++
Sbjct: 131 LLIDLDKATNHPYKGDPKRLKQVLFNLLSNAVKFTQKGEILLKVSLIETQDENEIVHFAI 190

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I     K +FN F        R   GVGLGLSI +  + + GG +   S+    
Sbjct: 191 KDTGIGIEPKQTKDLFNAFSQADMSTTRHYEGVGLGLSIAQGLVLMMGGEIQYKSTLGEG 250

Query: 782 TTINCRIPSKE 792
           +T    IP ++
Sbjct: 251 STFWFEIPLQK 261


>gi|255936613|ref|XP_002559333.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583953|emb|CAP91977.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2272

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A   K+ F+ ++S++LR+P+  +IG ++LLK +    L+ +Q +YV
Sbjct: 1815 AEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLKGTY---LDKEQDEYV 1871

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + L   ++EV +++     +  +   
Sbjct: 1872 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNLKQTISEVIRALRYTHRDRGLETI 1931

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---DFIFSVK 724
               D      V   D  RL QIF  +LSN+  F+  GS TV  + AR+         SV 
Sbjct: 1932 ENLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPAGSVTVKARVAREGTGRVRLECSVS 1991

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IP++    +F  F            G GLGLSI ++ I  + GG + + S     
Sbjct: 1992 DTGIGIPDEQKARLFRPFSQADASTERSYGGSGLGLSICKAIIEDVLGGAIWLESKPGVG 2051

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2052 TTVTFHL 2058


>gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 922

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 304 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 348

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 349 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 407

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 408 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 467

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 468 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 524

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 525 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 584

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 585 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 644

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 645 GGSIEIDSLPDFGTTVTVALPLRE 668


>gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
 gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
          Length = 1014

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 396 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 440

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 441 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 499

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 500 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 559

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 560 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 616

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 617 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 676

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 677 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 736

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 737 GGSIEIDSLPDFGTTVTVALPLRE 760


>gi|323138439|ref|ZP_08073508.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322396235|gb|EFX98767.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 742

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 113/691 (16%), Positives = 226/691 (32%), Gaps = 61/691 (8%)

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRI-LSLDGI-------YSELAETTLKCKKLSNHISVF 195
                 DC ++ +G V      LR     DG          ++       + L       
Sbjct: 71  TLSAAEDCFVRADGGVVWMSWQLRPWFEADGTIGGIVIFAEDVTPRKRAEEALRLSEERH 130

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ-KAIGESRKLFKEEIKKRMIS 254
           +    +    +W  +      + +  Y      E   F    +    +L   + +   ++
Sbjct: 131 RYAMQATREGLWDWNIKTGEAFISPYYCAMLGYEESDFAPDVVRHWIELLHPDDRDATLA 190

Query: 255 S-----SALEKNFCETVSTLEHGNNKS-------YKIVRVLNSFGEAGIAIDVSKEITVN 302
                 S      CE     + G  +         +           G  +D+++     
Sbjct: 191 RVDEWLSESGAYSCEFRLRTKDGKYRWILSRGKVVERDEAGAPSRAVGAHVDITERKQAE 250

Query: 303 DQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             L        +I  +    I +    +   + NR+++              + ++ L  
Sbjct: 251 AALIESEHRFQQIADHTPALIWMSGAEKGCTYFNRTWLNFTG---------RALEQQLGD 301

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPRG------ 410
             +A   P  L+     E   S + + +  +  + L   +G+   V+    PR       
Sbjct: 302 GWTACVHPNDLDRCL--ETYGSAFDARKPFEMEYRLRRHDGEYRWVLDVGVPRFTPEGEF 359

Query: 411 -GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G I    ++T + + E       +           G+  +         N  +  L+  
Sbjct: 360 LGYIGSGVDVTERRNAEEALRKREERLSLAQSSAHIGIWDWDLGANETFLNNEYYDLYGL 419

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVL 526
                       +      R   +S+     +         R   Q  +    D     +
Sbjct: 420 PRGASLTYDDFLSRVHPEDRQRVDSEMQTALSG------GGRLDFQCRIVRADDCETRWI 473

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
               I   NA               E  L +  E L   D  K+ F+  +++ELR+PL  
Sbjct: 474 ASKGIVFFNADGHPFRAMGAVYDITE--LKKIEEELLSVDRRKDEFLATLAHELRNPLGA 531

Query: 587 IIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           I    +LL   TS+  S   K+   +  I      L  +V+D+L++  +  G ++L    
Sbjct: 532 ISNSVNLLNILTSETSSAEEKKRASLARIKRQVNHLKRIVDDLLEITRIKHGKIELKKER 591

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L ++L++        + E   ++ +    +      D  RL+QIF  +L+NA+ F+  
Sbjct: 592 VELGEILSQAVDLCQPLVQEKGHQLTIELPSRPLEVDGDPVRLVQIFGNLLNNAVKFTDA 651

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
           G  + + AA    + I  V++ G+ +P +   S+F+ F       R    G+G+GL++  
Sbjct: 652 GGRIDIAAAHGEKEAIVRVRDTGAGLPPETLGSIFDMFAQVKTGSRIASGGIGVGLALSR 711

Query: 763 SFINLHGGHVSISSS-DEGVTTINCRIPSKE 792
             I LHGG +   S      +    R+P  +
Sbjct: 712 GLILLHGGRIDAHSDGPGHGSEFVVRLPLAK 742



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 87/268 (32%), Gaps = 28/268 (10%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            +    +A A+FD+                +   +L+  P +  +L         PE   
Sbjct: 9   FIEQTPIAAAMFDREMR----------YLAMSPRWLSEYPVDGPMLGLSHYE-LFPEIP- 56

Query: 371 WKTWKENIFS--VYKSSETHKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTV 421
            + WKE        ++    +D +   +G  + +     P        GG +   E++T 
Sbjct: 57  -ERWKEAHRRGLAGETLSAAEDCFVRADGGVVWMSWQLRPWFEADGTIGGIVIFAEDVTP 115

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG--TH 479
           +   E       +     +    EG+  +         +P + ++   EE+  +P    H
Sbjct: 116 RKRAEEALRLSEERHRYAMQATREGLWDWNIKTGEAFISPYYCAMLGYEESDFAPDVVRH 175

Query: 480 IRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +     R    +   +  +        F    K  +    L    V+E      P +
Sbjct: 176 WIELLHPDDRDATLARVDEWLSESGAYSCEFRLRTKDGKYRWILSRGKVVERDEAGAP-S 234

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRK 564
           + +   V++T+  +AE AL E     ++
Sbjct: 235 RAVGAHVDITERKQAEAALIESEHRFQQ 262


>gi|258623924|ref|ZP_05718877.1| sensor protein TorS [Vibrio mimicus VM603]
 gi|258583718|gb|EEW08514.1| sensor protein TorS [Vibrio mimicus VM603]
          Length = 968

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 124/261 (47%), Gaps = 5/261 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +T           +      +      +A   K++F+  +S+E+R+P+  ++G   
Sbjct: 434 LVEQRTHQLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTAR 493

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +   SL S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++ +   L  L+ 
Sbjct: 494 LLQET---SLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVR 550

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           E  + + ++  E  I +    +  +  +   D  R+ Q+ + ++ N + F+ +G   + +
Sbjct: 551 ETHELMQSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRI 610

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
               D     F+V+++G  I E    S+F+ F       +++G GLGL+I    +   GG
Sbjct: 611 SQDPDGQGIRFAVEDSGIGIAEQDQVSLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGG 670

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + +SS     +  +  +P +
Sbjct: 671 ELQLSSQLGQGSCFSFTLPLE 691


>gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01]
 gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01]
          Length = 1000

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 12/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+    +  +   KA + K+SF+ ++S+E+R+PL  +IG +++L  +   SL + Q  Y
Sbjct: 323 QAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDT---SLTATQKDY 379

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  SS +LL+L+NDILD + +++G++ ++  +  + + + ++   ++ K  E  I +
Sbjct: 380 VGTIETSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIDL 439

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSV 723
           KV IS       + D  RL Q+    +SNA+ F+ KGS V L          N    FSV
Sbjct: 440 KVSISRNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGS-VHLSVTTHGVSGANAVMEFSV 498

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  I E   K++F  F    +   R   G GLGL+I    + L GG + + S     
Sbjct: 499 QDSGIGIDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGKIQLESEKGHG 558

Query: 782 TTINCRI 788
           +    +I
Sbjct: 559 SRFFFQI 565


>gi|153834480|ref|ZP_01987147.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi
           HY01]
 gi|148869116|gb|EDL68152.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi
           HY01]
          Length = 786

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 156/377 (41%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   + +  ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEVAEHIVDTDQKVF-------ADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 313 ---LTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 369

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  ++
Sbjct: 370 ALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVED 429

Query: 717 GDFIF--SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   V++ G  IP++    +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 DYATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 490 ITVASEEGFGSTFTVSI 506



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVS 267
                N + ++ T   G    + +G S   ++ +E+ + ++ +        +    E   
Sbjct: 176 VFSGCNRAMEELT---GKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKHYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 93/312 (29%), Gaps = 59/312 (18%)

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           + ++ +   +EI++R+ +  A E+   +  + +                           
Sbjct: 108 LQQNIEKLNQEIEERIKAEEAREEAMQDLENEVFQRERT--------------------- 146

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
            ++ + ++       +      I   + +      NR+  EL       L      D   
Sbjct: 147 -QLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYS 205

Query: 354 -ELLEFLRSANK----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            E+ E +   ++      + + ++ W E         E  K  ++  +G+ L        
Sbjct: 206 KEVAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL-------- 257

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-------GVAVFGP---DGRIK- 457
             G +    ++T +   E       + +   I  +S        G+        D ++  
Sbjct: 258 --GLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQLTE 315

Query: 458 -------LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                    N +  +L     + +      R          N  D      +I ++   E
Sbjct: 316 EQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESI-SALMAE 374

Query: 511 RKSLQGTLELLS 522
           +K L+  LE LS
Sbjct: 375 QKGLRFDLERLS 386


>gi|303323473|ref|XP_003071728.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240111430|gb|EER29583.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320035142|gb|EFW17084.1| signal transduction histidine-protein kinase barA [Coccidioides
           posadasii str. Silveira]
          Length = 1285

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  
Sbjct: 704 QRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNV 761

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + + +  LL +++DILD++ ++A  M +      +   +    +++A K +E  + +   
Sbjct: 762 VHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQ 821

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSV 723
            D  +    + D  RL QI   ++ NA+ F+  G  V L  ++   +          FSV
Sbjct: 822 VDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGE-VKLTISKSTRELCQDEEYAFEFSV 880

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     
Sbjct: 881 SDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGHG 940

Query: 782 TTINCR 787
           +T +  
Sbjct: 941 STFHFT 946


>gi|152994178|ref|YP_001339013.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835102|gb|ABR69078.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 912

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 133/310 (42%), Gaps = 19/310 (6%)

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           ++E D       I +    + K+ +       + + EY++        +    +  D+  
Sbjct: 117 FDEQDNPAFICGI-SHETTKIKTAEKMAVEAGEKLKEYNV-------GLKQINDNLDAKV 168

Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            ER  AL      L +A E K+SFV  +S+E+R+P+  +IG +DL   +     + +Q  
Sbjct: 169 RERTAALELAKAELEEALEAKSSFVARMSHEIRTPINAVIGLSDLALNT--SPNHKEQQD 226

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I  S  ILL+LVN++LD + ++AG +           L+           +   + 
Sbjct: 227 YLQKIRDSGDILLSLVNNVLDFSKIEAGKLTAESVCFSTEKLIRTTVNMNVFGAYAKKLE 286

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSV 723
           +       +  ++  D  R+ QI   ++SNA+ F+  GS VI L+  + +G+       V
Sbjct: 287 LVTDIADDIPEYLLGDPLRIQQILVNLVSNAIKFTESGSIVIRLRCNKLDGENILLQCEV 346

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++G  I     + +F  F    +   R   G GLGL+I      L  G + + S     
Sbjct: 347 SDSGIGISSTQLEQLFCPFTQADNSVTRVYGGTGLGLTITRQLCELMNGEIKVESDVGKG 406

Query: 782 TTINCRIPSK 791
           +T    +P K
Sbjct: 407 STFTVLLPLK 416


>gi|258507900|ref|YP_003170651.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|257147827|emb|CAR86800.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|259649227|dbj|BAI41389.1| two-component sensor kinase [Lactobacillus rhamnosus GG]
          Length = 555

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 153/371 (41%), Gaps = 28/371 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q  L  K           ID+L  GV +   +  + L N A   L              
Sbjct: 203 EQTHLREKVAVRQSSFDRLIDNLPLGVMLIDTNKDVILHNHAMSQLLGH----------- 251

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I      Y ++   + L   I  +F  E+   Q    L +   ++ S+IPL    + L
Sbjct: 252 -QIPQPRHNYLDDVKTYALARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRL 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +           +      LR+ ++++  FV +VS+EL++P+T I GF + L +    
Sbjct: 311 QVL----------VILYDVTYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKN 360

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +   ++++ I   S  L  L+NDIL L+  ++       + + L  L+++  +++A 
Sbjct: 361 D-PATLDKFLKIIFDESKRLTQLINDILTLSRPESNQTV--QAQVPLKKLVDDALRNLAK 417

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +  IR++V     L   V D ++L QI   +L+NA+ ++     V + A    G   
Sbjct: 418 VIKDKQIRVEVAIAPDL-QVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLS 476

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  IPE     +F RF            G GLGL+IV   +    G V++SS  
Sbjct: 477 LAVADTGIGIPETEQARIFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQV 536

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 537 GVGSTFTVTLP 547


>gi|229090039|ref|ZP_04221290.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42]
 gi|228693269|gb|EEL46979.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42]
          Length = 709

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 15/251 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +    I
Sbjct: 294 ELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELATVI 353

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   V +
Sbjct: 354 HSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFTVEN 413

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDN------GDFI 720
              +   F  D +R+ QI   +LSNA  F+ KGS       +      D+          
Sbjct: 414 SDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKDWIT 473

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ S  
Sbjct: 474 ISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHV 533

Query: 779 EGVTTINCRIP 789
              +T    IP
Sbjct: 534 GEGSTFTVYIP 544


>gi|315051696|ref|XP_003175222.1| signal transduction histidine-protein kinase barA [Arthroderma
           gypseum CBS 118893]
 gi|311340537|gb|EFQ99739.1| signal transduction histidine-protein kinase barA [Arthroderma
           gypseum CBS 118893]
          Length = 1321

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 113/250 (45%), Gaps = 24/250 (9%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 717 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 774

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 775 SLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNLTYQVDSSVP 834

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------DNGDF 719
              + D  RL QI   ++ NA+ F+  G  V L+  +                  D   +
Sbjct: 835 DYVIGDPFRLRQIILNLVGNAIKFTEHGE-VTLEIKKHEPPPPAEGEPEREVCADDEYAY 893

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            FSV++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG V ++S 
Sbjct: 894 EFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSE 953

Query: 778 DEGVTTINCR 787
               +T +  
Sbjct: 954 YGRGSTFHFT 963


>gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 7894]
          Length = 927

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 309 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 353

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 354 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 412

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 413 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 472

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 473 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 529

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ QI S ++ NA+ F+ +G   + +   
Sbjct: 530 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQILSNLIGNAIKFTERGHISIDVHRA 589

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 590 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 649

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 650 GGSIEIDSLPDFGTTVTVALPLRE 673


>gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei B7210]
          Length = 988

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 370 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 414

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 415 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 473

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 474 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 533

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 534 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 590

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 591 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 650

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 651 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 710

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 711 GGSIEIDSLPDFGTTVTVALPLRE 734


>gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116]
 gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116]
          Length = 932

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  + ++    +GD     F V++ G
Sbjct: 392 VDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEIRSQSGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CR 787
             
Sbjct: 512 FT 513


>gi|170720805|ref|YP_001748493.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169758808|gb|ACA72124.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1201

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 163/385 (42%), Gaps = 13/385 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLS 475
             +  +   E   N  ++  G  ++     + V    G ++  N ++  ++  T +  + 
Sbjct: 558 RQIKQRQHAERALNDQLEFMGALLNGTPHPMYVRDRAGCLQSCNASYLEAVQATLDEVIG 617

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                   A + S     +D   + AA +    D    L+     +   +L Y       
Sbjct: 618 RRLEDSLFAGSESTRQIHADYLQVMAAGVPLIIDRPLRLKDREITIYHWILPYRDSLGEV 677

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-L 594
              +  ++++++  +  + L E  +    A+  K++F+  +S+E+R+P+  +IG  +L +
Sbjct: 678 QGIIGGWIDISERRKLVQELREAKQLADDANRAKSTFLATISHEIRTPMNAVIGMLELAV 737

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K +  G ++      +E    S+  LL L+ DILD+  +++G + L    + L  L+  V
Sbjct: 738 KRAHQGQID---RTSLEVAHHSAKDLLGLIGDILDIVRIESGHLSLAPEPVDLAALVESV 794

Query: 655 KQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +    +  +  +    VI+       + D  R  QI S ++SNA+ F+ +G   I    
Sbjct: 795 SRVFDGQARQKGLAFDVVIAPSARCHVLLDPLRFKQILSNLISNAIKFTGQGQVRISLCL 854

Query: 714 RDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFIN 766
           R+            V++ G  I +D  + +FN FV      +G R G GLGL+I  S   
Sbjct: 855 REEAPSAPPSLELEVRDTGIGIHDDDLQRLFNPFVQANPHSQGARAGTGLGLAICRSLCE 914

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           + G  +SI S  +  T +   +P +
Sbjct: 915 MMGASLSIKSVPDFGTQVRFSVPLQ 939



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 18/163 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L++ +     L +     ++ RD+AG +   N SY +  +      
Sbjct: 556 LRRQIKQRQHAERALNDQLEFMGALLNGTPHPMYVRDRAGCLQSCNASYLEAVQA---TL 612

Query: 234 QKAIGESRK--LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--------YKIVRVL 283
            + IG   +  LF      R I +  L+      V  +     +         + I+   
Sbjct: 613 DEVIGRRLEDSLFAGSESTRQIHADYLQ-VMAAGVPLIIDRPLRLKDREITIYHWILPYR 671

Query: 284 NSFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           +S GE     G  ID+S+   +  +L    ++  +   A + F
Sbjct: 672 DSLGEVQGIIGGWIDISERRKLVQELREAKQLADDANRAKSTF 714


>gi|170738329|ref|YP_001779589.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820517|gb|ACA95099.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 656

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 150/371 (40%), Gaps = 23/371 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D   + +       RI   NPA  S++  +  + +    +  IA    R +   
Sbjct: 135 LLRRVVDASPDAIVGTDAARRITSWNPAAASIFGLDTAQANGRDIVTMIAPRWLRRHAVP 194

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-----TFVNVTDSV 549
             +    A +   D       G     +     ++  P+ +AQ        T     +  
Sbjct: 195 ASFADLRAPVGPLDVLCVRPNGGRFRAT-----FAASPIVDAQGHCAGLSLTLREAGERR 249

Query: 550 RAERAL-------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           R+ER          +       ++ +K+  +  VS+ELR+PL  I G+ ++L+ +     
Sbjct: 250 RSERHHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWAEVLRNADGQDF 309

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                Q V+ I  S+  L ++V D+LD +++  G ++L    + L  +  +  + + T  
Sbjct: 310 ---AQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIARDAARELDTTA 366

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N + +            AD +RL Q+ S +LSNA+ F+  G  V +   R       S
Sbjct: 367 QANGLVLSTEYAMPACVIPADGERLRQLLSNLLSNAIKFTPPGGRVNVSLTRAGERVRLS 426

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-E 779
           V + G  I  +    +F  F     A    +RG+GLGLSIV +   LHGG V  +S+   
Sbjct: 427 VSDTGQGIAPEYLPHLFETFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAG 486

Query: 780 GVTTINCRIPS 790
              T+   +P+
Sbjct: 487 RGMTVTVTLPA 497



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 20/218 (9%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              ++     AI   D  R +   N +   ++ +D A          +       + +P 
Sbjct: 136 LRRVVDASPDAIVGTDAARRITSWNPAAASIFGLDTAQANGRDIVTMIAPRWLRRHAVP- 194

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
                      F+  ++     D     PNG        ++P          L++ +   
Sbjct: 195 ---------ASFADLRAPVGPLDVLCVRPNGGRFRATFAASPIVDAQGHCAGLSLTLREA 245

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +     +    ++    +         R+K        L  T  + L       N+   
Sbjct: 246 GERRRSERHHLRSLRGARDARVQADASNRLK------DELLATVSHELRTPL---NVIYG 296

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            +     +DG D     + + D   +SL   +  L D+
Sbjct: 297 WAEVLRNADGQDFAQQAVDAIDRSARSLSHMVADLLDA 334


>gi|91780564|ref|YP_555771.1| multi sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
 gi|91693224|gb|ABE36421.1| Multi sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
          Length = 1344

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 101/488 (20%), Positives = 193/488 (39%), Gaps = 19/488 (3%)

Query: 308  TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
               +L +  +A  + D +  ++        ++ + LA +   P  + L   L  A     
Sbjct: 727  VTNLLASTEIATLLLDGHAVIKRFTPRAARIFGLALADID-RPITNVLGNPLGDALL--- 782

Query: 368  QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
            +   +          K  ET    W++        +  ++P G  +  + ++T     + 
Sbjct: 783  EDVQRVLSAQTGQAEKEIETVTGEWYVRRITPYIAVKGASPAG-VVVTWNDITHVKASDE 841

Query: 428  KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
            +   L  V  ++ D ++    VF  +GR+   N A  +++   E      T    +    
Sbjct: 842  RSRRLAAVVQDSNDAMT----VFDLNGRLMAWNRAATAMYGYTEAEALGMTVSDMLPPGA 897

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM---LTFVN 544
             + + +   +      + S++ +R +  G +    D  +  SI+       +    T   
Sbjct: 898  RQDHLDFIRYAAHNEALHSYETQRVTKGGRVV---DIWITLSILSDDQGHAVAIATTERE 954

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            +TD   +   L E+ E L +AD  KN F+  + +ELR+PL  +    DLL +  +     
Sbjct: 955  LTDRSLSNAQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSSGDLLASETIDP--R 1012

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            ++S  V  I      +  LVN++LDL  + +G ++L    + L  ++    +     + E
Sbjct: 1013 QKSWAVGVIQRQGRSMTQLVNEMLDLTRITSGSIELRRQAVTLKAVIQSAVEVCQPIIDE 1072

Query: 665  NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             +  + V    +      D  RL Q+   I+ NA  ++  G  + L A R        VK
Sbjct: 1073 RHHTLSVSLPDEPVLMYVDPTRLSQVVENIVINAARYTEPGGHISLTATRTGRRLSLRVK 1132

Query: 725  NNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            +NG  IP  M  ++F+ FV     +     G+G+GLS+V   + LHGG V   S     +
Sbjct: 1133 DNGRGIPASMLSTLFDMFVQGPVPYGQLHNGLGVGLSVVRRLVELHGGSVRAISDGRTGS 1192

Query: 783  TINCRIPS 790
                 +P 
Sbjct: 1193 EFIVDLPL 1200


>gi|322804626|emb|CBZ02178.1| osmosensitive K+ channel histidine kinase KdpD [Clostridium
           botulinum H04402 065]
          Length = 464

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 118/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +     +   +       L    + + K D++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 210 NFKVKSEKMFDDEFGELSDTLNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++++          ++ I   S  L  +V ++LD +   +G MKLN   I + ++++ V
Sbjct: 270 NSNEVDK--EILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEISICEIIDTV 327

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +    + N I  K     KL +   DR R+ Q+   +L NA  F+ +G  V L    
Sbjct: 328 RKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELSTKY 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                   VK+ G  I ++    V  +F        +   G+GLSI +  I LH G + I
Sbjct: 388 KEEYITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN--GIGLSICDEIIKLHNGVLHI 445

Query: 775 SSSDEGVTTINCRIP 789
            S +   TTI+ ++P
Sbjct: 446 ESEENKGTTISIKLP 460


>gi|153939122|ref|YP_001389721.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152935018|gb|ABS40516.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295317809|gb|ADF98186.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 464

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +     +   +       L    + + K D++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 210 NFKIKSEKMFDDEFGELSDTLNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++++          ++ I   S  L  +V ++LD +   +G MKLN   I + ++++ V
Sbjct: 270 NSNEVDK--EILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEISICEIIDTV 327

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +    + N I  K     KL +   DR R+ Q+   +L NA  F+ +G  V L    
Sbjct: 328 RKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKY 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       VK+ G  I ++    V  +F        +   G+GLSI +  I LH G + I
Sbjct: 388 EEEYITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN--GIGLSICDEIIKLHNGVLHI 445

Query: 775 SSSDEGVTTINCRIP 789
            S +   TTI+ ++P
Sbjct: 446 ESEENKGTTISIKLP 460


>gi|153930827|ref|YP_001382755.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153937672|ref|YP_001386306.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|170754453|ref|YP_001780006.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152926871|gb|ABS32371.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152933586|gb|ABS39085.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|169119665|gb|ACA43501.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 464

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +     +   +       L    + + K D++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 210 NFKIKSEKMFDDEFGELSDTLNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++++          ++ I   S  L  +V ++LD +   +G MKLN   I + ++++ V
Sbjct: 270 NSNEVDK--EILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEISICEIIDTV 327

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +    + N I  K     KL +   DR R+ Q+   +L NA  F+ +G  V L    
Sbjct: 328 RKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKY 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       VK+ G  I ++    V  +F        +   G+GLSI +  I LH G + I
Sbjct: 388 EEEYITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN--GIGLSICDEIIKLHNGVLHI 445

Query: 775 SSSDEGVTTINCRIP 789
            S +   TTI+ ++P
Sbjct: 446 ESEENKGTTISIKLP 460


>gi|148378356|ref|YP_001252897.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|148287840|emb|CAL81906.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 464

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +     +   +       L    + + K D++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 210 NFKIKSEKMFDDEFGELSDTLNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++++          ++ I   S  L  +V ++LD +   +G MKLN   I + ++++ V
Sbjct: 270 NSNEVDK--EILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEISICEIIDTV 327

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +    + N I  K     KL +   DR R+ Q+   +L NA  F+ +G  V L    
Sbjct: 328 RKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKY 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       VK+ G  I ++    V  +F        +   G+GLSI +  I LH G + I
Sbjct: 388 EEEYITIVVKDTGVGISKEDLPRVKEKFYKGNSGKSKN--GIGLSICDEIIKLHNGVLHI 445

Query: 775 SSSDEGVTTINCRIP 789
            S +   TTI+ ++P
Sbjct: 446 ESEENKGTTISIKLP 460


>gi|83816058|ref|YP_446610.1| two component system histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83757452|gb|ABC45565.1| Two component system histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 755

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/466 (17%), Positives = 182/466 (39%), Gaps = 19/466 (4%)

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
           ++        P   E +     A +   +       +   ++    ++        + + 
Sbjct: 273 DLGRPLTEALPGLGETIRRGEPAWRAGFEKGEAQECQEERAMTTPKQSDASVHPAEHCRY 332

Query: 400 LHVIVTSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
             VI TS  +G      +  ++T Q   E +     +     ++  +    V  PDG  +
Sbjct: 333 FRVIQTSLGQGMDTQTVVLSDITEQKRRERELRESERRFQAMLNDPNILAGVLSPDGTFQ 392

Query: 458 LSNP---------AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
             N              L +         T  R+          E +     A  +T  D
Sbjct: 393 KVNDTALGYIEATRADVLGRPFWETPWWETENRSAVREKVERVAEGEYVRFEAEHVTP-D 451

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            E +++ G +  ++    E   I +                +A+           +A  +
Sbjct: 452 GEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRKARRLKQAKEQAELSKLEAEEASRM 511

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++ + ++S+E+R+PLT IIGF + +     G  +   + + + I  S   LL+ ++ +L
Sbjct: 512 KSAMLANMSHEIRTPLTGIIGFAEAIGDEIDG--DGGVAHFADLIEDSGRRLLDTLDAVL 569

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +L+ ++AG M L    I L     +V +  A +  ++ + ++V ++       AD   L 
Sbjct: 570 NLSKLEAGQMTLESRPIDLAGQARQVAREFAAEADDSGLALEVEAEE--AGAWADEGGLQ 627

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH- 747
            +   +LSNA+ ++ +G TV ++  R++G+ +  +++ G  +   + +S+F  F   +  
Sbjct: 628 IVLQNLLSNAIKYTEEG-TVQVRTYREDGEAVLQIEDTGIGMDPAVAESLFEPFRQGSEG 686

Query: 748 -RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +  G G+GL++ +      GG + + +     +T   R+P+ +
Sbjct: 687 LSREYEGTGIGLAVTKKATEQMGGSIDVETEKGQGSTFTARLPAAD 732


>gi|218709123|ref|YP_002416744.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218322142|emb|CAV18256.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 818

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 124/240 (51%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + +   K +F+  +S+E+R+P+  ++G   +L  +    L+++Q ++++ + 
Sbjct: 329 LEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLSTEQEKHLKSLY 385

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G + L+ +   L+ ++  +     T   E  ++ KV S+
Sbjct: 386 DSGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVYYTLSSEKGLQFKVYSE 445

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILK--AARDNGDFIFSVKNNGSSI 730
              G +  +D+ RL QI   +L+NA+ F+S+G   V LK    R +      V++ G  I
Sbjct: 446 VPSGRWYFSDKARLRQILFNLLNNAVKFTSRGFVEVYLKEIVERGDTYLSIRVRDTGIGI 505

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  K +F  F        RR  G GLGL+IV+    L  G +S++S +   T+ + R+
Sbjct: 506 SKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMEGSISVTSEEGIGTSFDVRL 565


>gi|157374424|ref|YP_001473024.1| hybrid sensory histidine kinase BarA [Shewanella sediminis HAW-EB3]
 gi|157316798|gb|ABV35896.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 937

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 79/322 (24%), Positives = 138/322 (42%), Gaps = 14/322 (4%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I  +    ++         +   +I   D  ++ +      LSD   E          
Sbjct: 213 QPITEMVRVVAKIREGKLDTRVDGNLIGELDLLKRGINAMAGSLSDYHDEMQQNIDQATS 272

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKT 596
            +   +   +    E  L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT
Sbjct: 273 DLRETLEQIEIQNVE--LDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT 330

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+S Q  Y+  I  S+T LL ++NDILD + ++AG M L      L ++L++   
Sbjct: 331 ----PLHSSQQDYINTIEKSATTLLGIINDILDFSKLEAGKMVLENMPFALREMLDDTIT 386

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
            ++    E +I + V  +  +      D  R+ QI + ++ NA+ F+ +GS  + L+   
Sbjct: 387 LLSNSAREKDIELVVDIESDVPEDLSGDAMRISQIMTNLVGNAIKFTDQGSVHLKLQLTE 446

Query: 715 DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
            N +       V + G  I +   + +F  F        RR  G GLGL I +  +N  G
Sbjct: 447 SNNEQVHLRCEVTDTGIGIDDSQKEVLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMG 506

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +   S  +  +T    +P +
Sbjct: 507 GQIGCISKLDKGSTFWFTLPLQ 528


>gi|315919855|ref|ZP_07916095.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693730|gb|EFS30565.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 632

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 130/243 (53%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          + S+Y
Sbjct: 394 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PHVENREEMSEY 450

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 451 ADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTC 510

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +      +   D+ RL+Q+ +  + NA+ F+  G+  +     D+    F V + G  
Sbjct: 511 TFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCG 570

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +   +T    +P
Sbjct: 571 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628

Query: 790 SKE 792
            ++
Sbjct: 629 YRQ 631


>gi|229068657|ref|ZP_04201955.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185]
 gi|228714404|gb|EEL66281.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185]
          Length = 709

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 15/251 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +   +L+  + +    I
Sbjct: 294 ELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVI 353

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  
Sbjct: 354 HSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIED 413

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NGDFI 720
              + + F  D +R+ QI   +LSNA  F+ KGS             + D          
Sbjct: 414 SDTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWIT 473

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ S+ 
Sbjct: 474 ISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNV 533

Query: 779 EGVTTINCRIP 789
              +T    IP
Sbjct: 534 GEGSTFTVYIP 544


>gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 91]
          Length = 927

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 309 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 353

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 354 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 412

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 413 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 472

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 473 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 529

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 530 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 589

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 590 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 649

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 650 GGSIEIDSLPDFGTTVTVALPLRE 673


>gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
 gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
          Length = 1032

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 414 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 458

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 459 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 517

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 518 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 577

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 578 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 634

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 635 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 694

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 695 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 754

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 755 GGSIEIDSLPDFGTTVTVALPLRE 778


>gi|146305210|ref|YP_001185675.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145573411|gb|ABP82943.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1168

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 141/314 (44%), Gaps = 5/314 (1%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +          ++  +  A ++       ++ Q  LE  ++ + E +         + 
Sbjct: 412 EELQTQQEELRAANEELEQQARVLKESQAHLETQQAELEQTNEKLSEQAQTLADQRDELD 471

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                   ++A+  L E+ E L++A   K+ F+ ++S+ELR+PL + +    LL  +  G
Sbjct: 472 QRNTALGRIQAQ--LEERAEELQRASRYKSEFLANMSHELRTPLNSSLILAKLLAENARG 529

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+ +Q ++ E I ++   LLNL+NDILD+A V+AG +++      L  +L  +      
Sbjct: 530 NLDEEQVKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPERTPLAGMLESLSDVFEP 589

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              E  +  ++    +L  +   DRQR  QI   +LSNA  F+ +G   +  +  D    
Sbjct: 590 LARERGLSFEIERQAELPQTLFTDRQRAEQILRNLLSNAFKFTDRGGVTLRVSRHDEQTL 649

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F+V ++G  I  D    +F  F        RR  G GLGLSI      L GG + +SS 
Sbjct: 650 AFAVSDSGIGIAPDQQAVIFEAFRQADGTTNRRYGGTGLGLSISRDLAGLLGGSIGVSSV 709

Query: 778 DEGVTTINCRIPSK 791
               +T    +P +
Sbjct: 710 PGEGSTFTLLLPER 723


>gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei K96243]
 gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein
           [Burkholderia pseudomallei K96243]
          Length = 1014

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 396 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 440

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 441 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 499

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 500 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 559

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 560 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETV 616

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 617 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 676

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 677 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 736

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 737 GGSIEIDSLPDFGTTVTVALPLRE 760


>gi|313620815|gb|EFR92041.1| sensor protein kinase WalK [Listeria innocua FSL S4-378]
          Length = 610

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +L     L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTLDKPYVLRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERXDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFE-MMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKSKGTIIKFTLP 600


>gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum
           DSM 5476]
 gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum
           DSM 5476]
          Length = 1068

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 11/254 (4%)

Query: 548 SVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             R + A+ + N E    A   K  F+  +S+E+R+PL  I+G    +    L     K 
Sbjct: 537 RARMKAAVIQGNLEKAEAASRAKGEFLSRMSHEIRTPLNAILGM-GAIAMQHLDD-TKKV 594

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ ++ SS  LL L+ND+LD++ +++G ++L          L  +      +  E  
Sbjct: 595 ENCLKKLTLSSNHLLALINDVLDMSKIESGKVELRSEPFDFRAYLESLSNLYYGQAKEKG 654

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFI 720
           +  K +  G++  + V D  RL QI + +LSNA+ F+  G ++ L+ ++           
Sbjct: 655 LEYKTVLTGEVDETLVGDSLRLNQILTNLLSNALKFTPAGGSIQLRVSQKVQGSNTVRLH 714

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V + G  I E   + +F  F         +  G GLGLSIV+ F  L GG VS+SS  
Sbjct: 715 FEVTDTGCGIDEQNYQKIFESFEQEDSSVTNKYGGTGLGLSIVKRFSELMGGSVSVSSRL 774

Query: 779 EGVTTINCRIPSKE 792
              +T    +P ++
Sbjct: 775 GEGSTFAVELPFQK 788


>gi|167462457|ref|ZP_02327546.1| two-component hybrid sensor and regulator [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322381877|ref|ZP_08055831.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154265|gb|EFX46587.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 365

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 136/328 (41%), Gaps = 29/328 (8%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +     +  N +   D+    +T+   E++ L  T  L     ++Y + P          
Sbjct: 34  VLLVDDQQENLNKSKDIPIIFVTAASHEKEHLFTTYSL---RAIDYIVKPFTPQMLKSKI 90

Query: 543 VNVTDSVRAERALTEKNEALR--------------KADEIKNSFVQHVSYELRSPLTNII 588
               +    ++ L  + E L                A+  K++F+  +S+E+R+P+  ++
Sbjct: 91  AGFVNMYTIQKKLQHQTEMLDLRTKELLMAKEAAEAANRAKSNFIAVMSHEIRTPMNGVM 150

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
              D         L  +Q +Y E IS S   LL ++NDILD   +++  ++L      L 
Sbjct: 151 AMAD---LLLETELTEEQREYTETISKSGNALLTIINDILDFTKMESSKIELEEEIFHLE 207

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
            L+ E       +  + N+ ++   +  +    V D  RL QI   +LSNA+ F+ KG  
Sbjct: 208 QLIGECIDLFLVECRKKNLVLERRINQDIPQYVVGDATRLRQILINLLSNAVKFTEKG-K 266

Query: 708 VILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
           V L+       +D  +  F V + G  IP++    +F  F         +  G GLGL I
Sbjct: 267 VSLEVKKRSEEKDGVELEFKVSDTGIGIPKNKMDRLFKSFSQIDFSMTRKYGGTGLGLVI 326

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            ++ I L  G ++++S +   T+    I
Sbjct: 327 CKNLIELMSGTITVTSVEREGTSFIFTI 354


>gi|116051045|ref|YP_790128.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586266|gb|ABJ12281.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 741

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRN 482
             E   +  + ++   +D +   V++   DGR+   N  +  SL  T E          +
Sbjct: 102 RTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDSD 161

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                           +      SF D    + G L  +   V  Y          M  +
Sbjct: 162 WVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQGRVLGLMNGW 221

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+      + 
Sbjct: 222 IDITERERLARQLREAMRQAGEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRL--AP 279

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++   +E    ++  L  L+ DILD+A +++G + L    + L  ++  V++      
Sbjct: 280 EQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGD 718
            +  +R+ V  D   G   + D  R  Q+ S ++SNA+ F+ +G  V ++      D G 
Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERSLDEGR 398

Query: 719 FIFSV--KNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
            I  V  +++G  I       +F  F+  A     + G GLGL+I    ++L GG V + 
Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 776 SSDEGVTTINCRI 788
           S     T ++  +
Sbjct: 459 SEPGKGTRVSLDL 471



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 10/147 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +   L         LS  +++ + L D + + V  R   G +L  N +Y ++        
Sbjct: 93  LQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQA 152

Query: 234 QKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNK---SYKIVRVLNSFG 287
           +  +       +    + M     + A       T   +  G       + +    +  G
Sbjct: 153 RGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQG 212

Query: 288 EAGIA----IDVSKEITVNDQLTHTYE 310
                    ID+++   +  QL     
Sbjct: 213 RVLGLMNGWIDITERERLARQLREAMR 239


>gi|148255684|ref|YP_001240269.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407857|gb|ABQ36363.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains [Bradyrhizobium
            sp. BTAi1]
          Length = 1695

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 137/307 (44%), Gaps = 22/307 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              +      +++ LQ T E L     + +       + +       +  +A RAL EK  
Sbjct: 957  QQLAAELQAQQRELQQTNEQLEQKAQQLA------ERNVEVERKNQEIEQARRALEEKAT 1010

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L  KQ ++   I  + T L
Sbjct: 1011 ELALTSKYKSEFLANMSHELRTPLNSILILGQQLTENPDGNLTMKQVEFARTIHGAGTDL 1070

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
            LNL++DILDL+ +++G + ++   I+  +LL  V +    +     +   +  D  L  S
Sbjct: 1071 LNLISDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRLLSFNIDVDPNLARS 1130

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNN 726
             V D +RL Q+   +LSNA  F++ G   +  +A   G                F V + 
Sbjct: 1131 IVTDSKRLQQVLKNLLSNAFKFTADGGVRLKVSAALGGWSAEHPVLNTAPAVIAFEVSDT 1190

Query: 727  GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP+D  K +F  F         +  G GLGL+I     NL GG + + S+    +T 
Sbjct: 1191 GIGIPQDKQKLIFEAFQQADAGTSRKYGGTGLGLAISRELANLLGGEIHLKSAPGKGSTF 1250

Query: 785  NCRIPSK 791
               +P K
Sbjct: 1251 TLYLPLK 1257


>gi|147672178|ref|YP_001215511.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|262168577|ref|ZP_06036273.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27]
 gi|146314561|gb|ABQ19101.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|227015203|gb|ACP11412.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|262023106|gb|EEY41811.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27]
          Length = 857

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 156/379 (41%), Gaps = 26/379 (6%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +   +           
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--IQFLREDAQNHFL 400

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +         ++   D  + + T  D        +  ++   ++            +
Sbjct: 401 FEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISI----------I 450

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T    AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +  
Sbjct: 451 TQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT-- 508

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + +   
Sbjct: 509 -PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYR 567

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++     GD
Sbjct: 568 PLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGD 626

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                +  V + G  I E     +F  F+       R   G GLGL+IV S + +  G +
Sbjct: 627 PLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQL 686

Query: 773 SISSSDEGVTTINCRIPSK 791
            +SS     T    ++P +
Sbjct: 687 HVSSEYGIGTRFEIQLPIE 705


>gi|146284300|ref|YP_001174453.1| hypothetical protein PST_3988 [Pseudomonas stutzeri A1501]
 gi|145572505|gb|ABP81611.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 797

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 141/386 (36%), Gaps = 17/386 (4%)

Query: 410 GGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G    + E +T  +           +     +   ++G+     +     ++P    +  
Sbjct: 290 GRAQALAEEMTRHIRQSRHDLRLSEERLSLALKGSNDGLWDLDLEAGSMYASPRAWEMLG 349

Query: 469 TEENRLSPGTHIRNIAATCSRYYNE-SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              N L     +            + +       A +  F  E + L     ++   +L 
Sbjct: 350 YRPNELPCDLKLWERVTVAEDLAQQKARLAQTMLANVDHFTTELRLLHKHGHVVP-VLLR 408

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             I   P          + D    +R            +++KN FV  VS+ELR+PLT+I
Sbjct: 409 GYIQRDPQGMAQRISGTLMDLTERKR-----------IEQMKNDFVSTVSHELRTPLTSI 457

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G   L+    LG       Q +E   ++S  L +L+ND+LD+  + AG M        L
Sbjct: 458 SGALGLIVGGALGKAPPSMQQMLEIAYSNSLRLGHLINDLLDMEKIAAGKMSFELREHSL 517

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +LL E   S      ++ +R  +     +     D  RL Q+    LSNA  F+  G  
Sbjct: 518 GELLKESLASNQALCDQHGVRCSLEHATDV-RVWVDGMRLQQVLGNFLSNAFKFTPAGGH 576

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + + ++        SV + G  IPE     VF +F         Q+ G GLGL+I +  I
Sbjct: 577 IRVHSSLRGQRVRISVTDQGPGIPEAFRSRVFEKFAQADASDSRQKSGTGLGLAITKELI 636

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
              GG V         TT  C +P +
Sbjct: 637 ERMGGTVGFDCEPGQGTTFWCELPIQ 662


>gi|256840736|ref|ZP_05546244.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738008|gb|EEU51334.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 761

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 9/273 (3%)

Query: 524 SVLEYSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              E+    L +A          +N+ +    E  L    E   ++D +K++F+ ++S+E
Sbjct: 490 QWWEFRYGSLEDANDGYVINGLCLNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHE 549

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++L+  S+      ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M 
Sbjct: 550 IRTPLNAIVGFSNLM-NSEEVLEPEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMS 608

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             +    LN L+NE+  +    M E  + +++           D  RL Q+ S  ++NA+
Sbjct: 609 FVFDRHDLNVLINEIYCTFQLMMPE-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAI 667

Query: 700 DFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            F++ G   +       GD     V++ G  IPE+  K VF+RF       Q  G GLGL
Sbjct: 668 KFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGL 725

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I +      GG + + S     +     +P +
Sbjct: 726 AICQVIAQRFGGEIQLKSEYGKGSRFTLTLPKE 758


>gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
 gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
          Length = 1014

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 396 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 440

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 441 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 499

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 500 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 559

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 560 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 616

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 617 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 676

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 677 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 736

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 737 GGSIEIDSLPDFGTTVTVALPLRE 760


>gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112]
          Length = 927

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 309 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 353

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 354 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 412

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 413 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 472

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 473 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 529

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 530 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 589

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 590 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 649

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 650 GGSIEIDSLPDFGTTVTVALPLRE 673


>gi|87118375|ref|ZP_01074274.1| serine/threonine kinase with two-component sensor domain [Marinomonas
            sp. MED121]
 gi|86166009|gb|EAQ67275.1| serine/threonine kinase with two-component sensor domain [Marinomonas
            sp. MED121]
          Length = 2128

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            + LT       +A++ K+ F+  +S+E+R+P+  +IG + L+  ++   LN +Q  Y+  
Sbjct: 1503 KQLTLAKLQAEEANQAKSMFLATMSHEIRTPMNAVIGLSHLVLKTQ---LNLEQKDYLNK 1559

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I  S+ ILL L+N +LD + ++A  + L      LND++       + K  E  + + + 
Sbjct: 1560 ILESAEILLGLINSVLDFSKIEAHKLALESIPFNLNDVIENSTSICSIKAKEKGLALNIH 1619

Query: 673  S-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDF---IFSVKNNG 727
              +  +     D  RL QI   + +NA+ F+  G   + +    +  D     F + + G
Sbjct: 1620 CHNADIPLLQGDPLRLQQILINLANNAVKFTRIGQVDIHIHLEPNEQDLAQLKFEIVDTG 1679

Query: 728  SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              + +    ++F+ F         Q  G GLGL+I +  I L GG + ++S     +T  
Sbjct: 1680 VGMNKKQIDNLFSSFSQGDDSITRQYGGTGLGLAISKELIELMGGEIWVNSEMGKGSTFG 1739

Query: 786  CR 787
             R
Sbjct: 1740 FR 1741


>gi|228932403|ref|ZP_04095285.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827339|gb|EEM73091.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 896

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|187777044|ref|ZP_02993517.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC
           15579]
 gi|187773972|gb|EDU37774.1| hypothetical protein CLOSPO_00589 [Clostridium sporogenes ATCC
           15579]
          Length = 464

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 119/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +     +   +       L    + + K D++KN F+  VS+ELR+PLT+I G++  L
Sbjct: 210 NFKVKSEKMFDDEFGELSDTLNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWSITL 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++++          ++ I   S  L  +V ++LD +   +G M LN   I + ++++ V
Sbjct: 270 NSNEVDK--EVLKDGLKIIEDESERLSGMVEELLDFSKFVSGKMNLNKEEINICEIIDTV 327

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +    + N I  K     KL +   D+ R+ Q+   +L NA  F+ +G  V L    
Sbjct: 328 RKQLEPYAYRNRINFKATCINKLPNIYGDKNRIKQVLINLLDNAFKFTPEGGLVELNIKY 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       VK+ G  I ++    V  +F        +   G+GLSI +  + LH G + I
Sbjct: 388 EEEYITIFVKDTGVGISKEDLPRVKEKFYKGNSGKSKN--GIGLSICDEIVKLHNGVLHI 445

Query: 775 SSSDEGVTTINCRIP 789
            S +   TTI+ ++P
Sbjct: 446 ESEENKGTTISVKLP 460


>gi|183220472|ref|YP_001838468.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167778894|gb|ABZ97192.1| Putative two-component response regulator; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 807

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 133/271 (49%), Gaps = 12/271 (4%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +Y  +    +Q +     +  + + +  L ++ E        K++F+  +S+E+R+P+  
Sbjct: 384 QYGFLVFGLSQALFIADRMIQNFKNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNG 443

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G T +   +   SL  +Q +Y+  I  S   LL LVNDILDL  ++AG  +L   TIV
Sbjct: 444 ILGMTQMFGQT---SLTDEQKEYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIV 500

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
           L+  LN++ Q   +K++   + ++++++  L    + D++R  QI S +L NA+ F+  G
Sbjct: 501 LSKFLNDMVQLFRSKINTQYVNLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTETG 560

Query: 706 STVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
            T+ L    D  D         +K+ G  IP +    +F  F+       G+  G GLGL
Sbjct: 561 -TISLIVWSDPIDSKKCKLNLQIKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGL 619

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I +  +    G +S+ S     +  +  IP
Sbjct: 620 TITKKIVEEMSGKISVLSELGKGSVFHVEIP 650


>gi|189910583|ref|YP_001962138.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775259|gb|ABZ93560.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 812

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 133/271 (49%), Gaps = 12/271 (4%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +Y  +    +Q +     +  + + +  L ++ E        K++F+  +S+E+R+P+  
Sbjct: 389 QYGFLVFGLSQALFIADRMIQNFKNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNG 448

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G T +   +   SL  +Q +Y+  I  S   LL LVNDILDL  ++AG  +L   TIV
Sbjct: 449 ILGMTQMFGQT---SLTDEQKEYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIV 505

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
           L+  LN++ Q   +K++   + ++++++  L    + D++R  QI S +L NA+ F+  G
Sbjct: 506 LSKFLNDMVQLFRSKINTQYVNLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTETG 565

Query: 706 STVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
            T+ L    D  D         +K+ G  IP +    +F  F+       G+  G GLGL
Sbjct: 566 -TISLIVWSDPIDSKKCKLNLQIKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGL 624

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I +  +    G +S+ S     +  +  IP
Sbjct: 625 TITKKIVEEMSGKISVLSELGKGSVFHVEIP 655


>gi|311893920|dbj|BAJ26328.1| putative two-component hybrid sensor and regulator [Kitasatospora
           setae KM-6054]
          Length = 1247

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 4/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   A   + E L + D  K  F  ++S+ELR+PLT I G  + L+  +L   +    + 
Sbjct: 319 RGHEAQRRRAEQLAELDRAKTVFFSNISHELRTPLTLIAGPAEDLRR-RLADADPDVRED 377

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  ++  L  LV+ +LD + ++AG M+     + L  +  E+       +    + +
Sbjct: 378 AETIHRNALRLGRLVDTLLDFSRIEAGRMRARPRPVDLAAVTAELAAVFRPAVQRAGLTL 437

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++           D     ++   +L NA+ F+ +G TV ++    +G  + SV++ G  
Sbjct: 438 EIDCPPLSAPVAVDPGLWEKVVFNLLGNALKFTPEG-TVRVRVRERDGRALVSVEDTGIG 496

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +P      +F+RF  V +A      G G+GL++ +  + LH G ++ +S+    TT    
Sbjct: 497 VPAAELPRLFDRFHRVEDARARSHEGSGIGLALAKELVELHDGTITAASTAGSGTTFTVD 556

Query: 788 IPS 790
           +P 
Sbjct: 557 LPL 559


>gi|332653702|ref|ZP_08419446.1| sensory box histidine kinase [Ruminococcaceae bacterium D16]
 gi|332516788|gb|EGJ46393.1| sensory box histidine kinase [Ruminococcaceae bacterium D16]
          Length = 589

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 166/389 (42%), Gaps = 32/389 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID-HLSEGVAVFGPDGRIKLSNP 461
           + + +  G     F ++  Q+    +     + + +T+  H+++GV  F  +G +  SNP
Sbjct: 222 VASRDEIGVLTDTFNDMAGQLQDTLRQVENERNKLDTLFLHMTDGVVAFSRNGEVIHSNP 281

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A   +                  AT    + +    +         ++ER   +  L+LL
Sbjct: 282 AAEEMLGRTI----------TAEATYEELFGDLLSLEQVLQAPDYLEEERWEGERFLQLL 331

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                   + P    +     V + D  +             K  +++  FV +VS+ELR
Sbjct: 332 --------LAPFDRDRQGGVLVVLHDVTQQR-----------KTQDMQREFVANVSHELR 372

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLTNI  + + L  S      + + +++  I   S  + ++V D+L L+  D+G  +L+
Sbjct: 373 TPLTNIRSYAETLSDSAGELPPATEKKFLGVILNESDRMTHIVQDLLTLSRFDSGKDELH 432

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                 +  + ++  ++  +   ++ ++K+  +  L + VADR+R+LQ+   I+SN++ +
Sbjct: 433 LVRFPFDVAVQDLYNAVYMEAQRHDHKMKLRLEPDLPAVVADRERVLQVMMNIVSNSIKY 492

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
           +  G  +++ A R+       V ++G  IP      +F RF         Q  G GLGLS
Sbjct: 493 TPNGGHILVSAGREGDRVWMQVDDDGIGIPPKDRPRIFERFYRVDKARSRQSGGTGLGLS 552

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +  ++ H G + +   +    ++   +
Sbjct: 553 IAKEIVDRHEGVLELVDREGPGLSMRMEL 581


>gi|187922640|ref|YP_001894282.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
            PsJN]
 gi|187713834|gb|ACD15058.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
            PsJN]
          Length = 1480

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 89/517 (17%), Positives = 186/517 (35%), Gaps = 44/517 (8%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS------ 351
            E  +  QL     ++  +   +   D +      N ++ +   +    +    S      
Sbjct: 559  ERELELQLNFQETLMKTVPYPLVAKDLDGRYLAVNEAYEQACGLSRDAVVGRTSLQVQTW 618

Query: 352  ---NDELLEFL-RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
               N  +L+ + R      E    +   E      +            +GQ   V+ T  
Sbjct: 619  GEANSRILDEMTREMLNGGETAQVELQFERGAGNVRHGLFWTRICRGSDGQPACVLGT-- 676

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRS 465
                      ++T     E +     +   +    L   V       DG        F  
Sbjct: 677  --------MVDITDIRRAEMRARETERRLFDVTRSLPAVVFQLRRTADGAYT-----FPY 723

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            +     + L     ++N++          +      A +         +        D  
Sbjct: 724  ISGDARHLLGGRGSLQNVSDQVDFQRVCEEDRAFVLAELERSAHSETPVNMEFRFAGDQD 783

Query: 526  LEYS---IIPLPNAQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSY 578
            ++++   ++P   +   + +         E A    L    +    A   K+ F   +S+
Sbjct: 784  IKWARAELVPRRESDGSVVWSGYWVDASLEHARSDELARARDLAEAASRAKDDFFAMMSH 843

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            E+R+P+  ++G  ++L+ +    LN+ Q + +  I  S+  LL +++D+LD + ++AG +
Sbjct: 844  EIRTPMNGVLGLVEVLERT---PLNADQGEMLGMIHESAGALLQILDDLLDYSKIEAGRL 900

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSN 697
             +   +I L +L++     +A + HE  ++++V     +  +   D  RL QI   +L N
Sbjct: 901  TIEAESIDLRELVDNAVGLLAGRAHEKGLKVRVDIGPDVAATLRGDSVRLRQILFNLLGN 960

Query: 698  AMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
            A+ F+ +G   V +    +          V++ G  I  ++   +F  FV       RR 
Sbjct: 961  AIKFTPQGEVDVCVSVVAEGDGIQTLEMVVEDTGIGIAPEVQAKLFEPFVQAESSTTRRF 1020

Query: 753  -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I    I+L  G +++ S     T +  R+
Sbjct: 1021 GGTGLGLTICRKLIDLMNGSLTLRSEPGSGTCMTVRL 1057



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 52/159 (32%), Gaps = 17/159 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN-------- 225
           +  E+       ++L   ++  + L  ++ + +  +D  G  L  N +Y++         
Sbjct: 548 LQREVRLRKKTERELELQLNFQETLMKTVPYPLVAKDLDGRYLAVNEAYEQACGLSRDAV 607

Query: 226 TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST--LEHGNNKSYKIVRVL 283
                +  Q     + ++  E  ++ +      +           + HG     +I R  
Sbjct: 608 VGRTSLQVQTWGEANSRILDEMTREMLNGGETAQVELQFERGAGNVRHG-LFWTRICRGS 666

Query: 284 --NSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLT 316
                   G  +D++     E+   +     +++  +L 
Sbjct: 667 DGQPACVLGTMVDITDIRRAEMRARETERRLFDVTRSLP 705


>gi|296388461|ref|ZP_06877936.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 741

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRN 482
             E   +  + ++   +D +   V++   DGR+   N  +  SL  T E          +
Sbjct: 102 RTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDSD 161

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                           +      SF D    + G L  +   V  Y          M  +
Sbjct: 162 WVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQGRVLGLMNGW 221

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+      + 
Sbjct: 222 IDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRL--AP 279

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++   +E    ++  L  L+ DILD+A +++G + L    + L  ++  V++      
Sbjct: 280 EQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGD 718
            +  +R+ V  D   G   + D  R  Q+ S ++SNA+ F+ +G  V ++      D G 
Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERSLDEGR 398

Query: 719 FIFSV--KNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
            I  V  +++G  I       +F  F+  A     + G GLGL+I    ++L GG V + 
Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 776 SSDEGVTTINCRI 788
           S     T ++  +
Sbjct: 459 SEPGKGTRVSLDL 471



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +   L         LS  +++ + L D + + V  R   G +L  N +Y ++        
Sbjct: 93  LQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQA 152

Query: 234 QKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNK---SYKIVRVLNSFG 287
           +  +       +    + M     + A       T   +  G       + +    +  G
Sbjct: 153 RGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQG 212

Query: 288 EAGIA----IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                    ID+++   +  QL            A ++F
Sbjct: 213 RVLGLMNGWIDITERERLARQLREAMRQADEANRAKSVF 251


>gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
 gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
          Length = 933

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 126/692 (18%), Positives = 245/692 (35%), Gaps = 91/692 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + +E    + + ++    +  F+ L
Sbjct: 34  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPL 89

Query: 199 FDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRM 252
           F   D       W R     + W    ++ N      + +  +  S  L      ++   
Sbjct: 90  FADSDCSAMSNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMP 148

Query: 253 ISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +      K   E ++       +   +  Y I            A+           L  
Sbjct: 149 VERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLG 208

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFLATNPSND 353
             + +          L + + I D+N        + + L         D  ++       
Sbjct: 209 VEQTIRMENFFLPGTLPMGVTILDENG------HTLISLTGPESKIKGDPRWMQERSWFG 262

Query: 354 --ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             E    L     LP     + +    + +    +          + N   L+V+     
Sbjct: 263 YTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIR--------MLILNAILLNVLA---- 310

Query: 409 RGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNP 461
            G  ++    +  +           +     +   + +     G+ +    D    LSN 
Sbjct: 311 -GAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADSVNILSN- 368

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               L  T  N L+     R     C +  N       F  ++TS +    +LQ +    
Sbjct: 369 ---ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVHS 415

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR
Sbjct: 416 RYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELR 466

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+ 
Sbjct: 467 TPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIE 523

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                  +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+ 
Sbjct: 524 PREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIK 583

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           F+  G  ++L    D       V++ G  IP      +F+ F       +   +G GLGL
Sbjct: 584 FTDTG-CIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 642

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I E  I++  G +S+ S     +    RIP 
Sbjct: 643 AICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674


>gi|254787521|ref|YP_003074950.1| histidine kinase [Teredinibacter turnerae T7901]
 gi|237685843|gb|ACR13107.1| histidine kinase [Teredinibacter turnerae T7901]
          Length = 663

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 117/235 (49%), Gaps = 11/235 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K  F+  +S+ELR+PLT I+G+TDLL T    S +    +Y++ +S +   LL L+N
Sbjct: 146 SRAKTEFLTRLSHELRTPLTAILGYTDLLSTR---SKDEADQEYLQIVSHNGKHLLALLN 202

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADR 684
           D+LDL+ ++AG +++  S   +    +++      K  +  +  +V   G+L   F  D 
Sbjct: 203 DVLDLSKIEAGKLEIEKSFFEIQPFFSDIYLLFNMKAKDKGLDFEVRLTGELRPVFYGDA 262

Query: 685 QRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            RL QI   ++ NA+ F+S+GS +     I++   +       V + G  I  +    +F
Sbjct: 263 TRLRQIVLNLIGNAIKFTSQGSVIVEVSSIVENVGEEQQLRICVHDTGPGISSEQLDDIF 322

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             F   A + +    G GLGL+I    ++  GG +++ S+    +   C +P ++
Sbjct: 323 LPFNQAASKSEASENGTGLGLTISRELVSRMGGQLTVESTLGVGSCFCCTLPHEK 377


>gi|119476448|ref|ZP_01616799.1| two-component system sensory histidine kinase [marine gamma
           proteobacterium HTCC2143]
 gi|119450312|gb|EAW31547.1| two-component system sensory histidine kinase [marine gamma
           proteobacterium HTCC2143]
          Length = 458

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 13/291 (4%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS----VRAERALTEKNEALRKADE 567
           K+L+    ++     +Y I  +   +   T            +A   + +  E    A+ 
Sbjct: 163 KALKKGSIIVGGGNFDYKIPVIRKDEIGETAEAFNAMSGKLRQAMADVKKLKEDADFANN 222

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL--NSKQSQYVEYISASSTILLNLVN 625
            K+ F+ ++S+ELR+PL  IIG+++++          N  Q   ++ I  +   LLN +N
Sbjct: 223 AKSDFLANMSHELRTPLNAIIGYSEMMLEEIDPDDVNNEGQQSDLKNILIAGKHLLNQIN 282

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD + +++G M L       N +L+EV  ++     + +  +    D K+     D  
Sbjct: 283 DVLDFSKIESGNMTLYAELFDSNAILSEVIATMTPLAGQRDNTLIYSGDQKIPLLKNDAT 342

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           +   IF+ +LSNA  FS + + + + A       +   IF+V ++G  + E     +F  
Sbjct: 343 KFRHIFTNLLSNACKFSEQNA-IQISARLGPSGHSTMAIFTVSDSGIGMTEKQLSIIFEA 401

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F        R   G GLGL++ + + +L GG + ++S   G TT    +P 
Sbjct: 402 FKQADSSTTRQYGGTGLGLTLCKQYCDLMGGKIQVNSEVGGGTTFTVHMPL 452


>gi|152995279|ref|YP_001340114.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836203|gb|ABR70179.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 936

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 16/294 (5%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---ALTEKNEALR 563
              E  +LQ  L  LS+  LE+    L       T          E     L   N    
Sbjct: 234 LPPEYAALQKDLLDLSER-LEHHNEELIAGIEQSTEDIRRSMDSMEEKSAQLHIANREAM 292

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +++ +K+ F+ ++S+E+R+PL  I+G+T  L+       +++Q  YV+ I  S+  LL +
Sbjct: 293 ESNRLKSQFLANISHEVRTPLNAILGYTKTLQKDI---TDTQQRLYVDTIEQSTNSLLTI 349

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD---GKLGSF 680
           + DILD + ++AG + L  +   L  LL++V Q ++  +     +I ++ +        F
Sbjct: 350 IGDILDFSKIEAGKLNLESNHFNLKTLLDDVYQILSINLLTKEKQIDLVPEFSQDVPEWF 409

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCK 736
           V D  R+ QI + ++ NA+ F+ +GS    +  A          F + + G  I E    
Sbjct: 410 VGDSTRVRQILTNLIGNAIKFTHQGSVRTKVSIASQTPQEITLSFQIIDTGIGIAEHKIN 469

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F  F        R   G GLGL I +  +    G + +SS     +T    I
Sbjct: 470 RLFKPFSQVDTSTTRQFGGTGLGLVITKKLVEQMNGKIEVSSDPSIGSTFRFTI 523


>gi|229514185|ref|ZP_04403646.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA
           21]
 gi|229348165|gb|EEO13123.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA
           21]
          Length = 857

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 159/383 (41%), Gaps = 34/383 (8%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +               
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--------------- 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
           I+ +      ++            IT+        + T E+    V  +++ P+    Q 
Sbjct: 388 IQFLREDAQNHFLFEILERQLLPTITNAAQGNNPSEVTTEV-DGRVYRWNLSPIMVEGQI 446

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK
Sbjct: 447 ISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLK 506

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + 
Sbjct: 507 RT---PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAID 563

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++   
Sbjct: 564 RIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQL 622

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             GD     +  V + G  I E     +F  F+       R   G GLGL+IV S + + 
Sbjct: 623 IEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEML 682

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G + +SS     T    ++P +
Sbjct: 683 SGQLHVSSEYGIGTRFEIQLPIE 705


>gi|153217334|ref|ZP_01951085.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587]
 gi|124113650|gb|EAY32470.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587]
          Length = 834

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 156/379 (41%), Gaps = 26/379 (6%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +   +           
Sbjct: 320 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--IQFLREDAQNHFL 377

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +         ++   D  + + T  D        +  ++   ++            +
Sbjct: 378 FEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISI----------I 427

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T    AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +  
Sbjct: 428 TQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT-- 485

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + +   
Sbjct: 486 -PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYR 544

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++     GD
Sbjct: 545 PLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGD 603

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                +  V + G  I E     +F  F+       R   G GLGL+IV S + +  G +
Sbjct: 604 PLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQL 663

Query: 773 SISSSDEGVTTINCRIPSK 791
            +SS     T    ++P +
Sbjct: 664 HVSSEYGIGTRFEIQLPIE 682


>gi|606149|gb|AAA58012.1| protein kinase [Escherichia coli str. K-12 substr. MG1655]
          Length = 776

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 150/375 (40%), Gaps = 18/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG---VGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +          G    G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDS--HGGKPATGIGLAVSRRLAKNMGGDIT 486

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 487 VTSEQGKGSTFTLTI 501



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|313108338|ref|ZP_07794370.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|310880872|gb|EFQ39466.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 741

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRN 482
             E   +  + ++   +D +   V++   DGR+   N  +  SL  T E          +
Sbjct: 102 RTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDSD 161

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                           +      SF D    + G L  +   V  Y          M  +
Sbjct: 162 WVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQGRVLGLMNGW 221

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+      + 
Sbjct: 222 IDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRL--AP 279

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++   +E    ++  L  L+ DILD+A +++G + L    + L  ++  V++      
Sbjct: 280 EQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGD 718
            +  +R+ V  D   G   + D  R  Q+ S ++SNA+ F+ +G  V ++      D G 
Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERSLDEGR 398

Query: 719 FIFSV--KNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
            I  V  +++G  I       +F  F+  A     + G GLGL+I    ++L GG V + 
Sbjct: 399 AIVRVGVEDSGIGIAPADQARLFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 776 SSDEGVTTINCRI 788
           S     T ++  +
Sbjct: 459 SEPGKGTRVSLDL 471



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +   L         LS  +++ + L D + + V  R   G +L  N +Y ++        
Sbjct: 93  LQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQA 152

Query: 234 QKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNK---SYKIVRVLNSFG 287
           +  +       +    + M     + A       T   +  G       + +    +  G
Sbjct: 153 RGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQG 212

Query: 288 EAGIA----IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                    ID+++   +  QL            A ++F
Sbjct: 213 RVLGLMNGWIDITERERLARQLREAMRQADEANRAKSVF 251


>gi|220926141|ref|YP_002501443.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219950748|gb|ACL61140.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1839

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 134/301 (44%), Gaps = 17/301 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
                 E ++ Q  L+  ++  LE     L +    +   N  +  +A RAL EK   L  
Sbjct: 1097 QELAGELQTRQRELQQTNEQ-LEQKAQQLADRNDEVEAKNQ-EIEQARRALEEKAAELAL 1154

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ +Q ++   I  + T LLNL+
Sbjct: 1155 TSKYKSEFLANMSHELRTPLNSILILGQQLSENPDGNLSERQVEFARTIHGAGTDLLNLI 1214

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            +DILDL+ +++G + +    I   +LL    +    +     +   V    +LG+ + D 
Sbjct: 1215 SDILDLSKIESGTVSVEAEEISFANLLAATARPFRHEAENRRLAFDVEVAPELGTLITDS 1274

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNNGSSIP 731
            +RL Q+   +LSNA  F+ +G   +  A    G                F V + G  IP
Sbjct: 1275 KRLQQVLKNLLSNAFKFTEQGGVRLRVAPAAGGWSADHPILRQAPMVVAFEVSDTGIGIP 1334

Query: 732  EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +  K +F  F         +  G GLGL+I     NL GG + + S+    +T    +P
Sbjct: 1335 PEKQKIIFEAFQQADAGTSRKYGGTGLGLAISRELANLLGGEIQLRSASGVGSTFTLYLP 1394

Query: 790  S 790
             
Sbjct: 1395 L 1395


>gi|163738019|ref|ZP_02145435.1| hypothetical protein RGBS107_06394 [Phaeobacter gallaeciensis
           BS107]
 gi|163742585|ref|ZP_02149971.1| hypothetical protein RG210_06849 [Phaeobacter gallaeciensis 2.10]
 gi|161384170|gb|EDQ08553.1| hypothetical protein RG210_06849 [Phaeobacter gallaeciensis 2.10]
 gi|161388635|gb|EDQ12988.1| hypothetical protein RGBS107_06394 [Phaeobacter gallaeciensis
           BS107]
          Length = 516

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 156/379 (41%), Gaps = 15/379 (3%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            I  +  +      +      +   ++  +       + VW +   G + W+N++Y   +
Sbjct: 122 WIDGVTRVQLRSTSSEEHNHSIDQELTTLRSAVHQAPYPVWLQSDDGAVTWSNLAYDDLS 181

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
                  QK  G +   F E +   +    A  K    ++   E      Y I       
Sbjct: 182 -------QKIRGRNVD-FSEPLFTDLDDPMASGKPERISIPLPESKKKLWYNISTTETEA 233

Query: 287 GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G    A+DV+     EI   + +    +    L++ +AIFD+NR L   N   ++L  + 
Sbjct: 234 GWLCHAVDVNAVVDAEIAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALP 293

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTL 400
             FL++ P+     + LR    +PE  N+ +W+  +  + +++    +++TW LP+G   
Sbjct: 294 ANFLSSRPNLLTFFDRLRDQRMMPEPKNYSSWRHQMADLLEAAAEGRYQETWSLPSGSVY 353

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            V    +P G   ++FE++T ++ L  ++ + +++    +D + E +AVF  DG +  SN
Sbjct: 354 SVSGRPHPDGAIAFLFEDITAEITLTRQFRSELEMGQSIMDQMDEAIAVFANDGTMTFSN 413

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A+  LW+ + +       I + +         +  W      +   ++ R +    ++L
Sbjct: 414 AAYHDLWQMDPDGSFAKITIMDSSRVWQDMCAATPAWGEIRDFVAGSEN-RTAWWANVQL 472

Query: 521 LSDSVLEYSIIPLPNAQTM 539
            S + L   +  + N  TM
Sbjct: 473 RSGTPLVCKVSAIQNGATM 491


>gi|124515321|gb|EAY56831.1| putative periplasmic sensor signal transduction histidine kinase
           [Leptospirillum rubarum]
          Length = 506

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 3/242 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL E    L     +K+ FV   S+ELR+PLT+I GF  +L   KLG L  +Q   +  
Sbjct: 247 RALNEMARKLGDLSRMKSEFVTIASHELRTPLTSIRGFLSMLNRGKLGPLTPEQQNGLAI 306

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +      L+ LVN +LDL  +++G ++ +   + L  LLN ++        + NI  ++I
Sbjct: 307 VQEEVDHLVELVNGLLDLGRIESGQVRFDIQEVDLLALLNRIRSRHEAMAEQGNITFRLI 366

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D +L      D  ++ QI   +L NA  F+  G  V L+ +R +      V++ G  I 
Sbjct: 367 LDPELPPKIRTDPGKVAQILDNLLGNAFKFTPAGGEVELEVSRKDCQLEIEVRDTGIGIT 426

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F +F   A  +   R G+GLGL+I    +    G + +  +    T     +P
Sbjct: 427 QESLPFLFEKFYQVAPFNNRTREGLGLGLAITRGIVLNMEGEIHVRPNTPRGTVFRVTLP 486

Query: 790 SK 791
            +
Sbjct: 487 FQ 488


>gi|153800706|ref|ZP_01955292.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MZO-3]
 gi|124123681|gb|EAY42424.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MZO-3]
          Length = 857

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 156/379 (41%), Gaps = 26/379 (6%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +   +           
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--IQFLREDAQNHFL 400

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +         ++   D  + + T  D        +  ++   ++            +
Sbjct: 401 FEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISI----------I 450

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T    AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK +  
Sbjct: 451 TQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT-- 508

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + +   
Sbjct: 509 -PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYR 567

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++     GD
Sbjct: 568 PLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGD 626

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                +  V + G  I E     +F  F+       R   G GLGL+IV S + +  G +
Sbjct: 627 PLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQL 686

Query: 773 SISSSDEGVTTINCRIPSK 791
            +SS     T    ++P +
Sbjct: 687 HVSSEYGIGTRFEIQLPIE 705


>gi|53713792|ref|YP_099784.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216657|dbj|BAD49250.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 812

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 101/541 (18%), Positives = 222/541 (41%), Gaps = 32/541 (5%)

Query: 269 LEHGNNKS----YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
           +  G  K     Y+    L +     + + + KE  ++ +     +I  N+ V + ++++
Sbjct: 278 IVDGYRKWNSEDYQWFSSLANIISICMELRIIKERVMHSEKLFH-DIFTNIPVGLELYNK 336

Query: 325 NRYLQFHNRSFVELWEID-------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
              L   N   +E++ +        L    +     ++ E LR+       L +     +
Sbjct: 337 EGVLLDCNNRNLEIFGVGDKSRIVGLNLFESPNMTRDIHESLRAGRPGTFHLKY-----D 391

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
                +  ++ +      + ++L +    +     + +  + T + +  +K +       
Sbjct: 392 FDEERRLFQSERRGVMDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFS 451

Query: 438 ETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              D+   G A     D         +R+L ++ +  L+    I +      R       
Sbjct: 452 IISDYSKVGYAKINLLDHTGFAVRQWYRNLGESHDTPLADIIGIFSHMHPDDRKSVLDFY 511

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-----PLPNAQTMLTFVNVTDSVRA 551
               A     FD + +          + + + S++     P P  + +    ++T     
Sbjct: 512 EKAKAGTERFFDGDLRIRPADGSDRWNWIHKSSMVTAYQSPNPRLELVEVNYDITVQKET 571

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L    +   +++ +K++F+ ++S+E+R+PL  I+GF+DLL T       ++Q ++  
Sbjct: 572 EAELRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMT---VDDPAEQEEFRR 628

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  ++T+LL L +DI+DL+ +DAG  +     + L      + Q +  K+ E  + +++
Sbjct: 629 TIQKNNTLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPE-GVELQI 687

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729
             D  L ++  AD   L Q+ +  +SNA+ F+ +G T+ +    D        V++ G  
Sbjct: 688 DEDSPLDAWFSADSGYLNQVVTNFMSNAIKFTHRG-TITVGYRIDARQQLEMFVEDTGIG 746

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I  +  ++VF+RF+        +G GLGL + +S I   GGH+ + S     +     +P
Sbjct: 747 ISIENQEAVFDRFMKVDSF--VQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804

Query: 790 S 790
           +
Sbjct: 805 A 805


>gi|261408700|ref|YP_003244941.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261285163|gb|ACX67134.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 605

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 155/378 (41%), Gaps = 40/378 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                   +    +++++ G+ +    G+I L N A   +       ++  ++       
Sbjct: 243 RTIRDNEDLLQSVLNNMTGGIVLVSGAGQIILVNRAAEKMLGINAEVITGKSY-----RE 297

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             ++Y  +   +        F +ER      +    +S++        +  TM+      
Sbjct: 298 LKQHYELTKLMEEGLGSQADFHEER-----NVYYPVESIIRI------DGVTMMQEEEQE 346

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              R    L +    +R+ + +++ FV +VS+EL++PL  + GF + L    +    +  
Sbjct: 347 PYRRGMLFLLQDVSDIRRLERMRSEFVANVSHELKTPLAAVKGFAETLLGGGVTDEKTS- 405

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +++ I   S  L  L+ DIL+L+ +++  ++++YS I L+   + + + + T   +  
Sbjct: 406 RSFLQIIYDESERLNRLIGDILELSKIESKRIQMDYSPIHLSAFFDTISEMMRTVAEKKR 465

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720
           I +++    +L     D  +L QIF  +LSNA+ ++ +G  V L A   + D        
Sbjct: 466 IGLELDVPEEL-FMEGDEDKLRQIFMNLLSNAISYTQEGGRVKLTAREKHNDGSADDFVE 524

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGH 771
           F VK++G  IP+     +F RF        R                 IV+  ++LH G 
Sbjct: 525 FVVKDSGIGIPKKDLPRIFERFYRVDKARSRGSGGTGLGLS-------IVKHLVDLHHGT 577

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     ++    +P
Sbjct: 578 IKVESELGIGSSFIIELP 595



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 15/198 (7%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID------ 294
             L    + + + S           +S LE+      KI R  +  G+   AI+      
Sbjct: 182 AALVSYRVAQGLTSPLEKITRVARRISRLEYDAR--VKIHR-KDEIGQLAQAINGMADSL 238

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            ++  T+ D       +L+N+T  I +      +   NR+  ++  I+   +    S  E
Sbjct: 239 QTQLRTIRDNEDLLQSVLNNMTGGIVLVSGAGQIILVNRAAEKMLGINAEVITGK-SYRE 297

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-RGGTI 413
           L +       + E L  +       +VY   E+        +G T+       P R G +
Sbjct: 298 LKQHYELTKLMEEGLGSQADFHEERNVYYPVESIIRI----DGVTMMQEEEQEPYRRGML 353

Query: 414 WMFENLTVQVDLETKYNT 431
           ++ ++++    LE   + 
Sbjct: 354 FLLQDVSDIRRLERMRSE 371


>gi|260175349|ref|ZP_05761761.1| putative two-component system, sensor kinase [Bacteroides sp. D2]
 gi|315923581|ref|ZP_07919821.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697456|gb|EFS34291.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 570

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 107/517 (20%), Positives = 212/517 (41%), Gaps = 47/517 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              N     +++IL NL   I + D   +    + N+       I     A   ++ E+ 
Sbjct: 74  KKTNHSYRFSFDILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEE-AIGHTDYEIY 132

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGTI 413
              R          ++   + +    K     ++ +  P+G    T+ V    +  G   
Sbjct: 133 GEERGE-------KYRHIDKELIQAGK-VYRKEEKYTTPDGITHDTIAVKSIISWEGEKK 184

Query: 414 WMF---ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           W+     ++T   + E +           +K Q   +  +  G+     + R+      +
Sbjct: 185 WLLATRWDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRV-----QW 239

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +              I    S   NE  G   F   I      R ++      + D
Sbjct: 240 EETRQIASLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTI-----RVDD 294

Query: 524 SVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              E +  P+   +        +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++
Sbjct: 295 VDFEVTATPVFGDEKETEIIGGLLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANM 354

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF++++  ++       + ++V+ IS+++ +LL L++DILDL+ ++AG
Sbjct: 355 SHEIRTPLNAIVGFSEMVCQTEEEEE---RKEFVKIISSNNILLLQLIDDILDLSKIEAG 411

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   +N+L+  + + +  K    +++I             DR RL Q+     +
Sbjct: 412 TMEFTFAQTDINELMEGICRQMQEKNSSPDVQILFTEKADQCMMYTDRIRLSQVIINFTN 471

Query: 697 NAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           NA+ F+ KGS  +  +      +  F VK+ G  IP D    VF RFV        +G G
Sbjct: 472 NALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSF--IKGTG 529

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+I    +   GG + + S +   +    RIP  E
Sbjct: 530 LGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPRSE 566


>gi|172036434|ref|YP_001802935.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697888|gb|ACB50869.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 1303

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 118/674 (17%), Positives = 247/674 (36%), Gaps = 78/674 (11%)

Query: 170  SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            +L   Y   A      ++     +  + L      +V   D+ G +++ + + +K     
Sbjct: 645  NLIKAYRNDASRKQAEQEKEASENKLQALLTYSSDIVSIFDREGQLIYNSPAAEKIHGFS 704

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISS------SALEKNFCETVSTLEHGNNKSYKIVRV- 282
                Q    ++  L   + + R+  +         E    +     +       + V   
Sbjct: 705  LEEMQDI--KTFYLIHPDDRTRVGKTFSYLLHHPQETITVQYRYQTKRNEYVWMETVASN 762

Query: 283  ----LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI-AIF--------DQN-RYL 328
                 N  G    + D+S+     + L  + +    L   I  +F        D      
Sbjct: 763  QLHNPNIQGIVANSRDISERKQAEEALRESEQKFRQLAENIHEVFWMIELSKTDPTYHKS 822

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
             + + +  ++W  +   +  NP+  + +E +   ++       +  K  +  + +    +
Sbjct: 823  LYVSPACKDIWGYNPEDIYKNPT--QWIEAIHPEDR------QQIKKNLLQKLLQGGFDY 874

Query: 389  KDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGE--- 438
                  P+G    +     P             + E++T Q   E +   L +   +   
Sbjct: 875  HYRIIWPDGTLHWIRDRGFPVKNQSGDLVRVTGLAEDITEQKQREQEIKRLNEQLEQQNQ 934

Query: 439  ---------------TIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                            ++ L + V V   +  ++   N  F      + ++   GT I  
Sbjct: 935  ELEERVAQRTAELEMLLNTLPDFVFVVERNTMKLLFCNQVFAQGIGFDSHQQIQGTSIFE 994

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---- 538
              +     Y       +F +  T   +E  +L        D   +   +PL N Q     
Sbjct: 995  CFSPEMADYFVQQNQQVFNSGETLHLEEIIALPN-----GDRYFDTYKVPLQNLQGEIYA 1049

Query: 539  -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             + T  ++T+ VR ++ L E+   L   ++  +SF   VS++LR+PL +I GF + LK  
Sbjct: 1050 LLGTSRDMTELVRTKQVLMERTTQLEVTNQELDSFCYSVSHDLRAPLRHIHGFVNALKQR 1109

Query: 598  KLGSL---NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             + +    + K   Y+E I  SS  + +L++ +L L+ V  G  +L +  + +N ++   
Sbjct: 1110 LVDTDAKEDPKVIHYLEVIEKSSEKMGHLIDGLLTLSRV--GRRELVFYDVNINAVVETA 1167

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
               +++   E+ I+ ++   G+L +   D   L Q+F  +L N++ FS + + + ++   
Sbjct: 1168 ISMVSS--GEDQIKFEI---GQLPTVPGDMALLQQVFINLLQNSIKFSRERNPIKIEINC 1222

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 IF V +NG          +F  F     +    G G+GLSIV+  I+ HGG +  
Sbjct: 1223 LEDGTIF-VADNGVGFDMKYADQLFGAFQRLHSQKDFEGTGIGLSIVQRIIHRHGGQIWA 1281

Query: 775  SSSDEGVTTINCRI 788
             S      T   ++
Sbjct: 1282 ESVVGEGATFYLKL 1295



 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 137/438 (31%), Gaps = 46/438 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R L+L  + +ELAE   +  K     + F+ +F     L+   D  G ++  N++   + 
Sbjct: 66  RSLALKQLKTELAE---EITKRKKREAKFRAIFHQTFELIGLLDLEGRLVEVNLTALNSM 122

Query: 227 ETEGIVFQKAIGESRK------LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YK 278
             +    ++ +             + +IK  ++ +   E    ET     +G N +  + 
Sbjct: 123 GLKVDEIRETLFWENPWWGDSSELQTQIKTAILEAKQGENIRFETTYLDSNGQNNNVDFS 182

Query: 279 IVRVLNSFGEAGI----AIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQF 330
           +  V +  G+         D++    V  +L    E    I + +         +  +  
Sbjct: 183 LKPVKDEAGDIVFLLFEGRDITTIKKVQKELRENQEELEAIFNVIPDLFFRVKADGTIID 242

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           +  S   L  +        P  +           LP  ++ K  K  I    K +     
Sbjct: 243 YKSSANSLLYVSPEIFLQKPLTE----------ILPPTVSKKVEKA-IADTLKHNTLVSL 291

Query: 391 TWHL---PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            + L      +     +        I +  N+T     E             ID+L   +
Sbjct: 292 EYSLQMSTGEEHYEARLVPYKEQQIIAIVRNMTQTKKAELDLKKSKTFLQTIIDYLPVAL 351

Query: 448 AVFGPD----GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA- 502
            V        G++ L N     +     +++  G    ++         E    ++FA  
Sbjct: 352 FVKDARPDKFGQVLLLNKYCEDIVGLNSSQV-IGKTGHDLFPPEQANSYEQQDREVFAQG 410

Query: 503 ----IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
               I     D     + T+  +   + +    P      +    ++T   +AE  L + 
Sbjct: 411 VPKKIPEELIDSYNKGRRTVRTVKVPLYDEDKNP---EYLVCITEDITQEKKAEIELKKS 467

Query: 559 NEALRKADEIKNSFVQHV 576
           N+ L+     ++ F+   
Sbjct: 468 NDLLQGITLAQSQFIADA 485


>gi|327482684|gb|AEA85994.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 854

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 142/386 (36%), Gaps = 17/386 (4%)

Query: 410 GGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G    + E +T  +           +     +   ++G+     +     ++P    +  
Sbjct: 347 GRAQALAEEMTRHIRQSRHDLRLSEERLSLALKGSNDGLWDLDLEAGSMYASPRAWEMLG 406

Query: 469 TEENRLSPGTHI-RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              N L     +   +         ++       A +  F  E + LQ     +   +L 
Sbjct: 407 YRPNELPCDLKLWERVIVAEDLAQQKARLAQTMLANVDHFTTELR-LQHKHGHVVPVLLR 465

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             I   P          + D    +R            +++KN FV  VS+ELR+PLT+I
Sbjct: 466 GYIQRDPQGMAQRISGTLMDLTERKR-----------IEQMKNDFVSTVSHELRTPLTSI 514

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G   L+    LG       Q +E   ++S  L +L+ND+LD+  + AG M        L
Sbjct: 515 SGALGLIVGGALGKAPPSMQQMLEIAYSNSLRLGHLINDLLDMEKIAAGKMSFELREHSL 574

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +LL E   S      ++ +R  +     +     D  RL Q+    LSNA  F+  G  
Sbjct: 575 GELLKESLASNQALCDQHGVRCSLEHATDV-RVWVDGMRLQQVLGNFLSNAFKFTPAGGH 633

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
           + + ++        SV + G  IPE     VF +F         Q+ G GLGL+I +  I
Sbjct: 634 IRVHSSLRGQRVRISVTDQGPGIPEAFRSRVFEKFAQADASDSRQKSGTGLGLAITKELI 693

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
              GG V         TT  C +P +
Sbjct: 694 ERMGGTVGFDCEPGQGTTFWCELPIQ 719


>gi|293370846|ref|ZP_06617391.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|299148649|ref|ZP_07041711.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|292634062|gb|EFF52606.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|298513410|gb|EFI37297.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 654

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 128/243 (52%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          + S+Y
Sbjct: 416 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PHVENREEMSEY 472

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 473 VELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTF 532

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ +    NA+ F+  G+  +     D     F V + G  
Sbjct: 533 TFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCG 592

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +   +T    +P
Sbjct: 593 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650

Query: 790 SKE 792
            ++
Sbjct: 651 YRQ 653


>gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1023

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 99/517 (19%), Positives = 194/517 (37%), Gaps = 58/517 (11%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           ++     +F  +  +         L+     F+  +P              LP  +    
Sbjct: 6   SIPDLFFLFAPDGTILEFRGPTDRLYVPPEQFIGKHP-----------GEVLPPDVAALF 54

Query: 374 WKENIFSVYKSS-ETHKDTWHLPNG-QTLHVIVTS-NPRGGTIWMFENLTVQVDLETKYN 430
            +    +V +S   + +    LP+G +     +   N     + +  +LT    L  +  
Sbjct: 55  DRYLAAAVERSELVSFQYVLPLPDGPREFEARICPLNTNAQFLGVVRDLTNARRLAEREL 114

Query: 431 TLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +  +  +T D     +A+  P+ GR    + A            +    I +I A  + 
Sbjct: 115 LIETMFAQTTDS----IALVDPETGRFLAFSDAVYRDLGYTREEFAC-LSITDIQAEQAS 169

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTL---ELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
               ++   +  A I  F    +  +G +   E+    V+      + +    +T +   
Sbjct: 170 EEIAANIAAILNADIGGFATRHRDKEGRIHDVEINFRRVIHDGRTLISSVWRDVTELKRQ 229

Query: 547 DSVRAE--RALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTN 586
           +  R E  R L      L +                  A+  K++F+ ++S+E+R+P+  
Sbjct: 230 ERERLETARELEAYRGHLEELVATRTAELEAAKVAAEGANRAKSAFLSNMSHEIRTPMNA 289

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG++ L++      L  +Q++ +  ++ S+  LL ++NDILDL+ ++A  + L      
Sbjct: 290 IIGYSHLIRQE---PLTPRQTEQLNRLNDSAQHLLQIINDILDLSKIEAEKLTLEARDFE 346

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
              +L+ V   +A ++    + + V  D        D  RL QI   ++SNA+ F+ +G 
Sbjct: 347 PARVLDHVFNLVADQIQAKELNVLVDLDHVPLRLHGDGVRLGQILLNLISNAVKFTERGQ 406

Query: 707 T--------VILKAARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
                    V L  A D        +V++ G  +  +    +F  F        RR  G 
Sbjct: 407 IAIAVYPMSVPLAGAADPETLWLRWTVRDTGIGMTAEQLARLFRAFEQADGSTTRRYGGT 466

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGL+I +    L GG +  SS     +     IP +
Sbjct: 467 GLGLAISKRLTELMGGRIGASSQPGTGSEFWLEIPFE 503


>gi|237721425|ref|ZP_04551906.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229449221|gb|EEO55012.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 632

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 128/243 (52%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+GF+++L          + S+Y
Sbjct: 394 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNML---PHVENREEMSEY 450

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 451 VELIGTNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTF 510

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                    +   D+ RL+Q+ +    NA+ F+  G+  +     D     F V + G  
Sbjct: 511 TFAERLSQCTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCG 570

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +   +T    +P
Sbjct: 571 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628

Query: 790 SKE 792
            ++
Sbjct: 629 YRQ 631


>gi|186682169|ref|YP_001865365.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464621|gb|ACC80422.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 595

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           I S D+ R+  +  L L+  S+  ++   L N+             +A RA++E  +   
Sbjct: 156 IVSHDEHRQFDREDLRLM-KSLANFTASALYNSNARQAAEESARREQAARAVSEAAQNAA 214

Query: 564 KAD-EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +    +K+ F+  +S+ELRSPL  I+G+  LL+T KL    +K +  +  I  ++ +   
Sbjct: 215 EQANRLKDEFLAVLSHELRSPLNPILGWAKLLQTRKLD--EAKTAYALATIERNAKLQSQ 272

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ D+LD++ +    + L  S++ L+ ++     ++       +I +K   +  +G  + 
Sbjct: 273 LMEDLLDVSRILQRKLSLKISSVDLSAVIEVALDTVRLAAQAKSIELKTEFEPNIGQVLG 332

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+   +LSNA+ F+  G  V ++  R        V + G  I  +    VF+ F
Sbjct: 333 DPSRLQQVVWNLLSNAVKFTEDGGQVEIRLERVGTQAQIQVSDTGKGINPEFLPHVFDYF 392

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
               +   R   G+GLGL+I    I LHGG +   S  D+   T    +P K
Sbjct: 393 RQADNTTTRTFGGLGLGLAIARQIIELHGGAIQAESEGDDKGATFTVLLPIK 444


>gi|304312091|ref|YP_003811689.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
 gi|301797824|emb|CBL46046.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
          Length = 840

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 16/256 (6%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             ++  A     ++    R     K++F+  +S+E+R+P+  +IG ++LL  ++   L+S
Sbjct: 418 QFEAHAALEKAEQETRIARHNMRAKSNFLAMMSHEIRTPMNGVIGISELLSHTQ---LDS 474

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q +YV  I  S   LL LVNDILD + ++A  + L      L ++L E    +  K+  
Sbjct: 475 AQQRYVSTIRNSGEALLRLVNDILDFSKLEARKLTLEDIPFHLPEMLQECVDILTPKIQG 534

Query: 665 NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
           + + +++    KL   V  D  RL QI   +  NA+ F+ KG   I  + +D        
Sbjct: 535 SAVDLRLQISNKLPKMVNGDPTRLRQIILNLGGNALKFTRKGHVTIAVSFQDENFQPHQS 594

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGH 771
                  F+V + G  + E+  + +F  F     +   Q  G GLGL I +    L GG 
Sbjct: 595 NDDLLLRFTVSDTGIGLTEEQIQRLFQPFQQAEISTARQFGGTGLGLVICKDLAELMGGS 654

Query: 772 VSISSSDEGVTTINCR 787
           + + S      T    
Sbjct: 655 IGVHSISGEGATFWFT 670


>gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei
            87.22]
 gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces
            scabiei 87.22]
          Length = 1424

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 16/304 (5%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              A + +  +E +  Q  L+  +  + E +   L  +Q         +  +A + L  + 
Sbjct: 797  LTAELQARSEELQVQQDELQRSNAELEEKAS--LLASQNSDIEAKNLEIEQARQELETRA 854

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y   I ++ + 
Sbjct: 855  QQLALASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNLTPKQVEYAGIIHSAGSD 914

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLG 678
            LL L+NDILDL+ V+AG M +    + L  LL  V+ +      + ++   V  + G   
Sbjct: 915  LLQLINDILDLSKVEAGKMDVTPERVPLRKLLEYVEATFRPMTTQKSLDFTVATAPGTPA 974

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----------AARDNGDFIFSVKNNG 727
              + D  RL QI   +LSNA+ F+  G  V+               R      F VK+ G
Sbjct: 975  DLLTDDSRLRQILRNLLSNAVKFTEHGGVVLSIEPAADREVPTGVLRGGAVVAFRVKDTG 1034

Query: 728  SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              IP+   +++F  F         +  G GLGLSI     +L GG V++ S+    +T  
Sbjct: 1035 IGIPQQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSTPGQGSTFT 1094

Query: 786  CRIP 789
              +P
Sbjct: 1095 LYLP 1098


>gi|218691500|ref|YP_002399712.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ED1a]
 gi|218429064|emb|CAR09871.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli ED1a]
          Length = 778

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 150/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG + 
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIM 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------VRVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|192361523|ref|YP_001983038.1| GacS [Cellvibrio japonicus Ueda107]
 gi|190687688|gb|ACE85366.1| GacS [Cellvibrio japonicus Ueda107]
          Length = 974

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 123/241 (51%), Gaps = 10/241 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  +K+ F+ + S+E+R+PL  I+GF +L   ++   LN KQ +Y+E I
Sbjct: 298 ELDMARKEALEASRVKSEFLANTSHEIRTPLNGILGFINLALKTE---LNEKQREYMETI 354

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++N ILD + +++G + L+Y+ + +   ++EV   +A   HE N+++    
Sbjct: 355 RDSAQNLLTVINGILDFSKIESGKLTLDYAPLPIRKTVDEVLHMLAPDAHEKNLQLITYI 414

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG---DFIFSVKNNGS 728
           +  +    + D  R  Q+ S +++NA+ +S  G+ ++ +  A+          +V + G 
Sbjct: 415 EPCIPRNLLGDALRFKQVLSNLVTNAIKYSDAGNIIVDISIAQRQETQITLKVAVTDQGI 474

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + ++  +++F+ F        R   G GLGL+I +  +    G + + S+ E  +T   
Sbjct: 475 GLSQEEQENLFSAFSQVDSSSSREHDGTGLGLAICKGLVERMHGEIGVVSAPEQGSTFWF 534

Query: 787 R 787
            
Sbjct: 535 T 535


>gi|160887157|ref|ZP_02068160.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483]
 gi|156107568|gb|EDO09313.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483]
          Length = 654

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 128/243 (52%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L E  E   +A+++K++F+ ++S+E+R+PL  I+G +++L          + S+Y
Sbjct: 416 KAYSRLHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGLSNML---PHVENREEMSEY 472

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L+NDILDL+ ++AG      + I +N  L E++QS+  ++  NN+  
Sbjct: 473 ADLIETNTDLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTF 532

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +      +   D+ RL+Q+ +  + NA+ F+  G+  +     D+    F V + G  
Sbjct: 533 TFVERLPECTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCG 592

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + C  VF RFV   +    +G GLGLSI  + ++  GG + + S +    T    +P
Sbjct: 593 MSSEQCIHVFERFVK--YNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGATFWFTLP 650

Query: 790 SKE 792
            ++
Sbjct: 651 YRQ 653


>gi|54309013|ref|YP_130033.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9]
 gi|46913445|emb|CAG20231.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9]
          Length = 693

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 161/387 (41%), Gaps = 21/387 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E   + +D   +  +LV  + + + H  +    F     +      F  +    +   
Sbjct: 173 LLERAIIDIDYRERLQSLVTARTQELTHSQQRFKDFAK--TVGDW---FWEVDTDYQFTY 227

Query: 475 SPGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSI 530
               H+ N     +   +   +  +L   ++     ++       +L  D     +  S 
Sbjct: 228 ISSPHLANHVIDNANILDIFGEQSELRVKLLEQLKSKKTFEDIEWKLPEDEGGLWITLSG 287

Query: 531 IPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            P  N Q        T  ++T+  +    L    +    A+  K+ F+  +S+E+R+PL 
Sbjct: 288 TPYFNKQGKLLGYRGTAKDITNRKQRLVELQLARKQAETANNAKSEFLAMMSHEIRTPLN 347

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G  D L  S    L+ KQ ++V  +  S+ +LL ++NDILDL+ +++G  +L  + I
Sbjct: 348 AVLGLMDTLVDS---GLDKKQMEWVSQMEQSAQLLLTIINDILDLSRIESGKFELFNTDI 404

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            + D ++ V   +  +    NI +    D  +  S + D+ R+ Q+   ++ NA+ F++ 
Sbjct: 405 CIADSVSLVVNQLNEQAKRKNITLTTQIDESVPGSMLGDKNRITQVMFNLIGNAIKFTNV 464

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
           GS V +     N     +V + G  I      ++FN F+       RR  G GLGL+I  
Sbjct: 465 GS-VRVSVKAVNNHIEIAVTDTGIGIAPYAQNTLFNPFIQADGSITRRYGGTGLGLAISM 523

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             I    G++S+ S     +     IP
Sbjct: 524 HLIKKMDGNISLDSMLNVGSCFTVSIP 550


>gi|229551747|ref|ZP_04440472.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|258539146|ref|YP_003173645.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314878|gb|EEN80851.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|257150822|emb|CAR89794.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
          Length = 555

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 153/371 (41%), Gaps = 28/371 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q  L  K           ID+L  GV +   +  + L N A   L              
Sbjct: 203 EQTHLREKVAVRQSSFDRLIDNLPLGVMLIDTNKDVILHNHAMSQLLGH----------- 251

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I      Y ++   + L   I  +F  E+   Q    L +   ++ S+IPL    + L
Sbjct: 252 -QIPQPRHNYLDDVKTYALARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRL 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +           +      LR+ ++++  FV +VS+EL++P+T I GF + L +    
Sbjct: 311 QVL----------VILYDVTYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKN 360

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +   ++++ I   S  L  L+NDIL L+  ++       + + L  L+++  +++A 
Sbjct: 361 D-PATLDKFLKIIFDESKRLTQLINDILTLSRPESNQTV--QAQVPLKKLVDDALRNLAK 417

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +  IR++V     L   V D ++L QI   +L+NA+ ++     V + A    G   
Sbjct: 418 VIKDKQIRVEVAIAPDL-QVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLS 476

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  IPE     +F RF            G GLGL+IV   +    G V++SS  
Sbjct: 477 LAVADTGIGIPETEQARIFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQV 536

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 537 GVGSTFTVTLP 547


>gi|197106737|ref|YP_002132114.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196480157|gb|ACG79685.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 643

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 6/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D   A R L    +A   A+ +K  F+ ++S+E+R+PL  ++   +++   +L  L   Q
Sbjct: 233 DLRAAMRELESARDAANAANVLKTQFLANMSHEIRTPLNGVLAMAEVMALGELAPL---Q 289

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I  S  +LL ++ND+LDL+ ++AG + L      L   L++V+ +         
Sbjct: 290 RERLDVIRRSGGLLLAVLNDVLDLSKIEAGKLTLLDEDFELEPELDQVRDNFRIVALGKG 349

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +  +V +++   G +  D  RL QI   +LSNA+ F+ +G           G     V +
Sbjct: 350 LGFEVTVAEEAQGWWRGDADRLRQIVGNLLSNAVKFTMQGGVRAHVDLTPAGALRIVVSD 409

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +   ++F +F    +   RR  G GLGL+I      + GG + + S +   +T
Sbjct: 410 TGVGIAPEKLPTLFEKFTQADNSATRRFGGTGLGLAICRELTQMMGGSIDVESREGDGST 469

Query: 784 INCRIPSK 791
               +P +
Sbjct: 470 FTVELPLQ 477


>gi|159897466|ref|YP_001543713.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890505|gb|ABX03585.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 534

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 160/362 (44%), Gaps = 23/362 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                I+  ++G+ +     RI   N A   L        + G     + A  ++   + 
Sbjct: 170 RLDAIIESSADGMMMLDTRWRITRFNAAMERLTGWSREE-ALGRPCAEVLAIHNQ---QG 225

Query: 495 DGWDLFAAIITSF-DDERKSLQGTLELLSDSVL----EYSIIPLPNAQTMLTFVNVTDSV 549
               L A  +  F D++  S++G +       +     YS++  P  +      N+ D  
Sbjct: 226 VNICLTACPLQLFPDNDHPSVEGWVTHRDGHEIYVGSSYSVVREPTGRFGGAIANIRDIT 285

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + +R            ++ +++F+  +S+EL++P+  I G+   L  + +    + +++ 
Sbjct: 286 KQKR-----------DEQQQSTFISVMSHELKTPVAIIKGYASTLSRTDVKLNKATKAEM 334

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  L  L+ D+L+++ + AG ++L+ +   L++L  +V  + A  + +     
Sbjct: 335 LTGIEEEADRLARLIGDLLEVSRMQAGGLRLHPAPFDLSELAADVVAAFAATVDQR-FEF 393

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++  + KL    AD++R+  + S ++SNA+ +S +G  + L    +NG  +  V + G  
Sbjct: 394 QLRFEPKLPHVYADQERIRMVLSNLISNAIKYSPEGGVIRLGGWPENGHVLSYVTDEGIG 453

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++    +F  F    +R   + +G GLGL + +S I  HGG +   S+    +     
Sbjct: 454 IAQEELPKLFTPFYRVDNRLARETQGAGLGLYLTKSIIEAHGGRMWADSTVGKGSRFYWT 513

Query: 788 IP 789
           +P
Sbjct: 514 LP 515



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 3/155 (1%)

Query: 289 AGIAIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           A IA++ S+       +      I+ +    + + D    +   N +   L         
Sbjct: 151 AAIAVNNSQLYAEAIAERGRLDAIIESSADGMMMLDTRWRITRFNAAMERLTGWSREEAL 210

Query: 348 TNPSNDELLEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
             P  + L    +    +       + + +N     +   TH+D   +  G +  V+   
Sbjct: 211 GRPCAEVLAIHNQQGVNICLTACPLQLFPDNDHPSVEGWVTHRDGHEIYVGSSYSVVREP 270

Query: 407 NPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             R GG I    ++T Q   E + +T + V    +
Sbjct: 271 TGRFGGAIANIRDITKQKRDEQQQSTFISVMSHEL 305


>gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
 gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
          Length = 988

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 370 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 414

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 415 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 473

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 474 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 533

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 534 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 590

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 591 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 650

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 651 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 710

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 711 GGSIEIDSLPDFGTTVTVALPLRE 734


>gi|300853884|ref|YP_003778868.1| putative sensor histidine kinase [Clostridium ljungdahlii DSM
           13528]
 gi|300433999|gb|ADK13766.1| predicted sensor histidine kinase [Clostridium ljungdahlii DSM
           13528]
          Length = 456

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 3/239 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    + + K +++KN FV  VS+ELR+PLT+I G+   ++T         Q+  +E I
Sbjct: 220 ALNFMADEILKNEKLKNEFVASVSHELRTPLTSIKGWASTMRTGDFSDKEELQT-GLEII 278

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L  +V ++LD +   +G + L    + + + +  +K+  + +    NI   V  
Sbjct: 279 ENESDRLTKMVEELLDFSKFISGKITLKKDYVDIKNTIEYIKKQFSLRAWRQNINFSVKV 338

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +   + D  R+ Q+ + +L NA  F+ +G  V LKA   + + I  V + G  IPED
Sbjct: 339 QDNMPLVLLDENRIKQVLNNLLDNAFKFTQEGGKVTLKAFVKDENLIMIVDDTGIGIPED 398

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               V  +F     +  +   G+GLSI +  ++LHGG + I+S     T I   IP ++
Sbjct: 399 ELPKVTEKFFKG--KSDKCSNGIGLSICKEIVSLHGGKIEITSELVKGTEITLTIPVED 455


>gi|296104455|ref|YP_003614601.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058914|gb|ADF63652.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 919

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKSELNPTQRDHLHTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSV--KNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R   N      V  ++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRAISNNKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Enterobacter sp. 638]
 gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp.
           638]
          Length = 949

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 118/611 (19%), Positives = 229/611 (37%), Gaps = 63/611 (10%)

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAI--GESRKLFKEEIKKRMISSSALEKNFC 263
            W R     + W    ++ N      + +  +   E+  L    ++   +      K+  
Sbjct: 117 AW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSENLCLADFGLRDVPVEREDALKSLH 175

Query: 264 ETV------STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH---- 313
           E +         E GNN  + I +          A+           L  T + +     
Sbjct: 176 ERIMKYRNAPQDERGNN-IFWISQGPRPGVGYFYALTPVYLANRLQALLGTEQTIRMENF 234

Query: 314 ----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
               +L + + I D+N        + + L     + L  +P   +   +    +   E +
Sbjct: 235 FTPGSLPMGVTILDENG------HTLISLTG-PESRLKVDPRWMQERSWFGYTSGFHELV 287

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------ 423
             K+   +  S+  S               L+ I+ +   G  ++M   +  +       
Sbjct: 288 LKKSLPPSSLSIVYSV-PVDMVLERIRMLILNSILLNVLVGIALFMLARMYERKIFIPAE 346

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +     +   + +     G+ +    DG   LSN     L     N L+     R 
Sbjct: 347 SDAQRLEEHEQFNRKIVASAPVGICILRTQDGTNILSN----ELAHNYLNMLTHEDRQRL 402

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
               C +  N       F  ++TS      +LQ +           +I            
Sbjct: 403 TQIICGQQVN-------FVDVLTS---NHTNLQISFVHSRYRNENVAI---------CVL 443

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L
Sbjct: 444 VDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---L 500

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                + V  ++ SS++LL +++DILD + +++  +K+  S     +++N +  +    +
Sbjct: 501 PKGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPSEFSPREVMNHISANYMPLV 560

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               + +    +  +  + + D  RL Q+ S +LSNA+ F+  G  +IL  +R       
Sbjct: 561 VRKQLGLYCFIEPDVPLTLLGDPMRLQQVISNLLSNAIKFTDVG-CIILHVSRAGDYLSI 619

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            +++ G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ +   
Sbjct: 620 RIRDTGVGIPAKEVVKLFDPFFQVGTGVQRNFQGTGLGLAICEQLISMMDGDISVDTEPG 679

Query: 780 GVTTINCRIPS 790
             +    RIP 
Sbjct: 680 MGSQFTIRIPL 690


>gi|163846840|ref|YP_001634884.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524660|ref|YP_002569131.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163668129|gb|ABY34495.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448539|gb|ACM52805.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 479

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 7/229 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG----SLNSKQSQYVEYISASSTILLN 622
             K++F+  +S+ELR+PL  IIGF+  +           ++ +  Q +  I  S   LL 
Sbjct: 243 RSKSNFMATMSHELRTPLNIIIGFSTAMLEHPEMYGDVRIDEQVLQDIAEIRRSGQHLLG 302

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILDLA V+AG ++LN + + L  LL E  ++    +++  I+++      L +  A
Sbjct: 303 LINDILDLAKVEAGKLELNKTNLALGPLLEETLRTAQALINDRPIQLRREYREPLPTVFA 362

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  R+ Q+   ++SNA  F+  G  + + A  D  + +  V++ G  I     + +F +F
Sbjct: 363 DEVRVRQVLLNLVSNACKFTHAGE-IAVGARVDTNEIVLWVRDTGIGIAPADQERIFQQF 421

Query: 743 VS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               NA   Q  G GLGLSI    + LHGG + + S     +     +P
Sbjct: 422 EQIENADTRQHAGTGLGLSICRWLVELHGGRMWVESELGKGSIFFFSLP 470


>gi|262381341|ref|ZP_06074479.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296518|gb|EEY84448.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 761

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 9/273 (3%)

Query: 524 SVLEYSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              E+    L +A          +N+ +    E  L    E   ++D +K++F+ ++S+E
Sbjct: 490 QWWEFRYGSLEDANDGYVINGLCLNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHE 549

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++L+  S+      ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M 
Sbjct: 550 IRTPLNAIVGFSNLM-NSEEVLEPEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMS 608

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             +    LN L+NE+  +    M E  + +++           D  RL Q+ S  ++NA+
Sbjct: 609 FVFDRHDLNVLINEIYCTFQLMMPE-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAI 667

Query: 700 DFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            F++ G   +       GD     V++ G  IPE+  K VF+RF       Q  G GLGL
Sbjct: 668 KFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGL 725

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I +      GG + + S     +     +P +
Sbjct: 726 AICQVIAQRFGGEIQLKSEYGKGSRFTLTLPKE 758


>gi|312883424|ref|ZP_07743150.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369040|gb|EFP96566.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 963

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 137/299 (45%), Gaps = 11/299 (3%)

Query: 501 AAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK- 558
            AIIT+ D  +   +    E  +   LE     L    T  T      ++R    +    
Sbjct: 398 EAIITARDTAKALRVVADSEARAKRDLEDHQTRLEELITERTHQLQETNIRLNEEVENHA 457

Query: 559 --NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              +   +A+  K++F+  +S+E+R+P+  ++G   LLK      L+SKQ  YV+ I+ S
Sbjct: 458 RARKEAEQANRAKSAFLATMSHEIRTPMNGVLGTAQLLKD---DGLDSKQRHYVDVINRS 514

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            T LL ++ND+LD + ++AG + +      ++ ++ +  + +  +  E N+++    +  
Sbjct: 515 GTTLLAILNDVLDYSKIEAGFIDIRPINFDIHSMIKDTCELVGARAQEKNLKLDYFIESD 574

Query: 677 LGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD-NGDFIFSVKNNGSSIPED 733
           +  +   D  RL Q+ + ++ NA+ F+  G   + +    D  G  +F V + G  I E 
Sbjct: 575 VEQYWHGDATRLAQVLNNLVGNAVKFTDAGHVDLYVALNPDYEGYILFEVTDTGCGIDEV 634

Query: 734 MCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              ++F  F   ++    + G GLGL+I +  +   GG +   S+    +     IP +
Sbjct: 635 EQSTLFEPFTQASNGISSKGGTGLGLAISKRIVEAMGGEMFFDSTLGVGSRFGFTIPME 693


>gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii]
 gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii]
          Length = 823

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 136/297 (45%), Gaps = 21/297 (7%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L A  + +   E++ L   LE L++  LE  ++              T  ++A   LT  
Sbjct: 339 LVAISLAAAVREKRHLSKKLERLNER-LEVLVL-----------QRTTQLLKANEELTAS 386

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             A  +A + K+ F+ ++S+E+R+P+  I+G + L+  +    L  +Q   +  +   + 
Sbjct: 387 RTAAEQASQAKSDFLANMSHEIRTPIHGILGMSALVLAT---GLTEEQRDNMTTVKDCAD 443

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL+L+N ILD+A ++AG  ++   +  L  ++      +  +  E  +R+K   D ++ 
Sbjct: 444 MLLHLINGILDVAKIEAGRFEVELVSFNLCHVIKSTLHILEPRAREKRLRLKWDVDARVP 503

Query: 679 SF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN--GDFIFSVKNNGSSIPEDM 734
           +  V D  +L      ++ NA+ F+ +G   V +    D      +F V ++G  +  D 
Sbjct: 504 TVLVGDSGKLRHCLLNLVGNALKFTHQGYVQVTVAPYVDGLYPSLVFRVSDSGIGVSRDK 563

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++F  F        R   G GLGL IV+ F+ L GG + + S     +T    +P
Sbjct: 564 LSNIFKPFTQADPSISRLYGGTGLGLCIVQRFVELMGGQICVESEYGTGSTFCILLP 620


>gi|229521204|ref|ZP_04410624.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TM
           11079-80]
 gi|229341736|gb|EEO06738.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TM
           11079-80]
          Length = 785

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGHH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.6 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 59/147 (40%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
              +  G  G   D+++     + L  
Sbjct: 252 KDGHHLGLVGFGRDITERKRHEESLEK 278


>gi|218264472|ref|ZP_03478305.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221965|gb|EEC94615.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii
           DSM 18315]
          Length = 620

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 139/274 (50%), Gaps = 6/274 (2%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSY 578
           +++  +L    +       +  +   ++   + +  L E+ E   +A+++K++F+ ++S+
Sbjct: 349 IIAGGILLVIAVVYIILHLIYMYRRESERKKQVQLRLIEEKERAEEANKMKSAFLANMSH 408

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GFT+LL+  K    + ++  +   I+ +S +LL L+NDIL+L+ +++G M
Sbjct: 409 EIRTPLNAIVGFTNLLQDEK-DLTDEEKDLFRNTINKNSNLLLKLINDILELSRIESGRM 467

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              +    LN+LL E+ Q+    M   NIR              DR R  Q+ +  ++NA
Sbjct: 468 SFTFDDCALNELLEEIYQTHHLLMPS-NIRFLKEFQESELIIHVDRFRFTQVITNFINNA 526

Query: 699 MDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           + F++KG  ++     ++  +    V++ G  + E+  K VF RF       Q  G GLG
Sbjct: 527 VKFTTKGHILLGYVYKKEEKEAHIFVEDTGKGMSEEAQKKVFERFFKADEFAQ--GTGLG 584

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LSI ++      G ++++S +   +     IP +
Sbjct: 585 LSICQTIAERLDGRITLASQEGKGSCFTLIIPCR 618


>gi|197106180|ref|YP_002131557.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196479600|gb|ACG79128.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 588

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 7/244 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A  A    +     A   K++F+  +S+E+R+PL  ++G   +++  +LG    +Q Q+
Sbjct: 183 EARLASERLSVEAVAASRAKSAFLATMSHEIRTPLNGVLGMVQVMERGRLGV---RQRQH 239

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S+  L+ ++ND+LD++ ++ G ++L+     L      + +  A    E  +  
Sbjct: 240 LAVIRESAGALMKVLNDVLDISKIEVGKLELHAQPFELGAFAEGIGRLYAVLAEERGLSF 299

Query: 670 KV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++ + D   G  + D  RL QI S +LSNA+ F+ +G  V +  A D+     +V++ G 
Sbjct: 300 RLSVEDAGHGRLIGDEARLRQIVSNLLSNAVKFTPEGEVV-VSFAADDRSLTCAVRDTGI 358

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP      +F++F            G GLGL+I    + L GG + ++S+    +T   
Sbjct: 359 GIPAAQQAVIFDKFTQVDDGAARSFEGTGLGLAICRDLVELMGGEILVASTPGEGSTFTF 418

Query: 787 RIPS 790
           R+P 
Sbjct: 419 RVPL 422


>gi|86144427|ref|ZP_01062759.1| Signal transduction histidine kinase [Vibrio sp. MED222]
 gi|85837326|gb|EAQ55438.1| Signal transduction histidine kinase [Vibrio sp. MED222]
          Length = 857

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 159/397 (40%), Gaps = 34/397 (8%)

Query: 409 RGGTIWMFENL--TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            G  I+ F ++  T++   E + +   +   +  +     + V+   G +   NPA R  
Sbjct: 330 DGSNIFEFHHIGCTLEDTFE-RLSEQHQKFQDLFNFAHSPILVWSEKGDLIQMNPAARM- 387

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                           +      Y   +  ++L          +   L G    + + V 
Sbjct: 388 ---------------ALFDEDDNYGAMAREFELRMLPNIQMVVQGSKLTGINVPIGEKVF 432

Query: 527 EYSIIPLPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +++  +     +        ++T  + AER      E       ++  F+  +S+E+R+
Sbjct: 433 RWNMSAIRVEHGITGVVVQGQDITKLIEAERQADRAREEAEHLASVRADFLAKMSHEIRT 492

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G + LLK S     N  Q   V+ +  S+  LL ++NDILD + ++ G   +  
Sbjct: 493 PLNGILGVSQLLKRSIHDEDNRDQ---VDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQK 549

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDF 701
              +L +L+N +         + ++   +++          D+ RL QI   +LSNA+ F
Sbjct: 550 KDFLLGELVNTLDSIYRPLCEDKSVEFTIVNHLVDDIKIHTDQVRLNQIMFNLLSNALKF 609

Query: 702 SSKGST-----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           + +GS      +      D    I  VK++G  I E    ++F  FV       R   G 
Sbjct: 610 THQGSISVSFEIESILNTDYASLIVRVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGS 669

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGL+IV++ +++  G + + S  +  +     IP +
Sbjct: 670 GLGLTIVKNLVDMLEGDIQVRSVKDQGSEFIVEIPVE 706


>gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 1114

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL---T 556
           +AA   S  D  + ++GT        L  S   +  +      +  T +   E++L    
Sbjct: 371 WAAEKASGGDLDQIIEGTERSDEIGRLAISFSRMQRSIREKIGLIKTQNDELEQSLKIIQ 430

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +KN+ L+ AD++K+ F+   S+ELR+PL  ++G  + L     G L   Q + +E +  S
Sbjct: 431 QKNDELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPLQDPQRRQLEMLINS 490

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L NLV+D+LD   +  G + ++   I L+  +  V +  +  +    +RI       
Sbjct: 491 GQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQIPAD 550

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L    AD QRL Q+   ++ NA+ ++S+G  +I+ A          V + G  IP +  +
Sbjct: 551 LPLVDADEQRLEQVLYNLVGNAIKYTSEG-KIIISATVLEQQLRVQVVDTGQGIPSEQLE 609

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F   +         R+G GLGLSI    I L GG + +SS     TT +  +
Sbjct: 610 HIFEPLIQANSGSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMVGTTFSFTL 663


>gi|84388536|ref|ZP_00991083.1| sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84377085|gb|EAP93956.1| sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 817

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 124/240 (51%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + +   K +F+  +S+E+R+P+  ++G   +L  +    LNS+Q ++++ + 
Sbjct: 328 LEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLNSEQEKHLKSLY 384

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G + L+ +   L+ ++  +     T   E  ++ KV S+
Sbjct: 385 ESGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVYFTLSSEKGLQFKVYSE 444

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSI 730
              G +  +D+ RL QI   +L+NA+ F+S+G   V LK   +  D      V++ G  I
Sbjct: 445 VPSGRWYFSDKARLRQILFNLLNNAVKFTSRGFVEVYLKEVIEGSDTYLSIRVRDTGIGI 504

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  K +F  F        RR  G GLGL+IV+    L  G ++++S +   T+ + R+
Sbjct: 505 SKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMDGSITVTSEEGIGTSFDVRL 564


>gi|301161754|emb|CBW21294.1| putative histidine kinase [Bacteroides fragilis 638R]
          Length = 389

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVR---AERALTEKNEALR 563
           E +      E      LE   IP     N + +    ++    R    E  LT   E   
Sbjct: 102 ELRFWAKKREGFVLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAE 161

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K++ + ++++E+R+PL  ++GF  LL    +     +Q +Y+  I +++  LL L
Sbjct: 162 EANRLKSALIANMNHEIRTPLNAVVGFASLLS---IIDDEKEQQEYIGLIQSNTEHLLRL 218

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND++DL+ +++G+M +  S +VL+ L+ E++ +   K   NN+ +    +        D
Sbjct: 219 MNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNAHIYTD 278

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R RL+QI   +L NA+ F++KG+       ++NG   F V + G  IP D  + +F RFV
Sbjct: 279 RDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFV 338

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 Q  G+GLGLS+ +  I    G + + S     +T    IP
Sbjct: 339 KLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|262165943|ref|ZP_06033680.1| sensor histidine kinase [Vibrio mimicus VM223]
 gi|262025659|gb|EEY44327.1| sensor histidine kinase [Vibrio mimicus VM223]
          Length = 733

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 130/279 (46%), Gaps = 17/279 (6%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E  II +           +    +    L  +    + + + K++F+  +S+E+R+P+  
Sbjct: 312 EGEIIDIRYKNHDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNG 371

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   +L   +   L  KQ Q++  +  S   ++ L+N+ILD + ++ G  +L+YS   
Sbjct: 372 VLGTAQILLKDE---LTVKQRQHLTSLYESGEHMMYLLNEILDYSKIEQGKFELDYSPFP 428

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  ++  +K   ++   E  ++ ++ S+      +  D+ RL QI   +LSNA+ F+ +G
Sbjct: 429 LRSIIGSIKSIYSSLCFEKGLQFQLHSEIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQG 488

Query: 706 STVILKAARDN-GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
             V +  + +N GD       V+++G  IP+D    +F  F        RR  G GLGL+
Sbjct: 489 -FVSVGLSEENIGDEYFLTIKVQDSGIGIPQDALDRIFQPFEQAESHTTRRFGGTGLGLA 547

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI------PSKE 792
           IV+    L  G VS+ S     T    R+      P KE
Sbjct: 548 IVKQIAELMSGAVSVQSEVGQGTCFEVRVKLAASEPIKE 586


>gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
 gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
          Length = 2013

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 26/315 (8%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              A +    DE +  Q  L+  +  + E + + +   Q     V   +   A + L E+ 
Sbjct: 1326 LTAQLKDRSDELEQRQKALQESNAELEEKAALLVR--QNSDIEVKNGEIENARQVLEERA 1383

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ E I  + + 
Sbjct: 1384 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFAETIYGAGSD 1443

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M+++ + I L  L++ V+ +      E N+   V    +L  
Sbjct: 1444 LLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPA 1503

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---------------------AARDNG 717
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         D  
Sbjct: 1504 TLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGK 1563

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               FSV + G  I E   + +F  F         +  G GLGLSI      L GG +   
Sbjct: 1564 MIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQ 1623

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1624 SQPGRGSTFTLYLPL 1638


>gi|332532699|ref|ZP_08408575.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037915|gb|EGI74364.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 888

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 119/238 (50%), Gaps = 7/238 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L        +A+++K+ F+ ++S+E+R+PLT I+GFT+ L  +   + +    Q++  I
Sbjct: 394 QLELAIGQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKVAND---KQHLSTI 450

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S  LL L+N+ILDL+ ++A  + ++ S + +  L+++++  I     E  + + +  
Sbjct: 451 LRNSKHLLELINNILDLSKIEAEKLAVDLSALNVVQLVHDIESIIQPLAQEKQLTLNIDY 510

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIP 731
              L  +  +D  RL QI   I +NA+ F+  GS  + +   + +    F +K+ G  + 
Sbjct: 511 QLPLPRTIYSDVTRLKQILINIANNAVKFTENGSVSICVHYLQASQKLEFVIKDTGIGMS 570

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           E   + VF  F        RR  G GLGL I ++   L GG V++ S     +    R
Sbjct: 571 EHQIERVFKPFEQADATTTRRFGGTGLGLCISKNLALLLGGDVTLESEVGVGSRFTIR 628


>gi|15601492|ref|NP_233123.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121585608|ref|ZP_01675404.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           2740-80]
 gi|153819423|ref|ZP_01972090.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457]
 gi|153820666|ref|ZP_01973333.1| sensor histidine kinase LuxQ [Vibrio cholerae B33]
 gi|227812303|ref|YP_002812313.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2]
 gi|229506107|ref|ZP_04395616.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX
           330286]
 gi|229510036|ref|ZP_04399516.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33]
 gi|229516403|ref|ZP_04405850.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9]
 gi|229605638|ref|YP_002876342.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MJ-1236]
 gi|254849896|ref|ZP_05239246.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10]
 gi|262152398|ref|ZP_06028531.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE
           91/1]
 gi|298499532|ref|ZP_07009338.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757]
 gi|50401170|sp|Q9KLK7|LUXQ_VIBCH RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|9658157|gb|AAF96635.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550225|gb|EAX60239.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           2740-80]
 gi|126510031|gb|EAZ72625.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457]
 gi|126521709|gb|EAZ78932.1| sensor histidine kinase LuxQ [Vibrio cholerae B33]
 gi|227011445|gb|ACP07656.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2]
 gi|229346284|gb|EEO11255.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9]
 gi|229352481|gb|EEO17421.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33]
 gi|229356458|gb|EEO21376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX
           330286]
 gi|229372124|gb|ACQ62546.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MJ-1236]
 gi|254845601|gb|EET24015.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10]
 gi|262030849|gb|EEY49480.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE
           91/1]
 gi|297541513|gb|EFH77564.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757]
          Length = 857

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 158/383 (41%), Gaps = 34/383 (8%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +               
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--------------- 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
           I+ +      ++            IT+          T E+    V  +++ P+    Q 
Sbjct: 388 IQFLREDAQNHFLFEILERQLLPTITNAAQGNNPSDVTTEV-DGRVYRWNLSPIMVEGQI 446

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK
Sbjct: 447 ISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLK 506

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + 
Sbjct: 507 RT---PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAID 563

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++   
Sbjct: 564 RIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQL 622

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             GD     +  V + G  I E     +F  F+       R   G GLGL+IV S + + 
Sbjct: 623 IEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEML 682

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G + +SS     T    ++P +
Sbjct: 683 SGQLHVSSEYGIGTRFEIQLPIE 705


>gi|237746428|ref|ZP_04576908.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377779|gb|EEO27870.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 1070

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 117/765 (15%), Positives = 251/765 (32%), Gaps = 98/765 (12%)

Query: 99  LHQRIDIPQTDTDLLSFENW---LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKI 155
           + + + + +  +    + +W   +       +     ++ + G+  ++    ++    ++
Sbjct: 47  MLELLGLDEHPSPKACYAHWFSRIDPASVAYIRDCVAQMAETGRFMEVTYPWRHPAVGEM 106

Query: 156 EGRVSGSCAFLR-------------ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
             R  G   F R             I  L  +  +      + +++      +  LF+S+
Sbjct: 107 HVR-CGGKLFSRQGDEIELRGYHQNISELVQLQRDNIRKERELEEIGREKERYNALFESV 165

Query: 203 DFLV--WHRDQAGDILW--ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
              +  +     G +++  AN    +        F      + +          I     
Sbjct: 166 MCGIVQYRLLANGRVVFKSANSEAIRIFGYTPEAFWAVGEWNLEDLVAPEDWEDIRREIS 225

Query: 259 EKNFCETVSTLEHGNNKSY--------KIVRVLNSFGEAGI-----AIDVSKEITVNDQL 305
                   S  E+   K          +   +++  GEA        ID SK+  + + L
Sbjct: 226 RLEKVGDSSPFEYRLRKRDGSPCWIIGRAEILVDEEGEAVFRSVFLDIDESKKAEIENAL 285

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP--SNDELLEFLRSAN 363
                    +    A+      L        E +    + L   P  +        R A 
Sbjct: 286 LA-----EQVQAGNALL----RLALEYTQAFEFFYYPESRLCIIPERTQTHYGCKARYAG 336

Query: 364 KLPEQLNWK----TWKENIFSVYKSSET------------HKDTWHLPNGQTLHVIVTSN 407
            +PE         T ++   ++Y                 +++ W      TL  +  S 
Sbjct: 337 -MPESFADDFVDGTSRDGFMAMYDRIHAGEKTASADFRGRNRNVWCR---VTLSTVTFSE 392

Query: 408 PR-GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG----------PDGRI 456
            +    + + E++T +   E +   L  +    ++   + + V             D   
Sbjct: 393 GKPAYVVGIVEDVTREKTFELENTELHGIYDYILNTDYDLMGVADLEKGQYSLRFSDKFD 452

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAIITSFDDER 511
               P    + +  +  L    H  + A     +  E+     +  D +     S DD  
Sbjct: 453 DRGMPLKGEIVQGNDWMLERFVHPDDRARMAREWAVETVLSALEKSDSYTYYFRSDDDPP 512

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +  +G L           +                   R  + LT+  +   KA+  K+ 
Sbjct: 513 RYKEGKLSYFRGQKNRLLLT------FRDIHDVREKEERVRQTLTDALKVAEKANNAKSD 566

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+++R+P+  IIG    +   +      +  +Y+  IS +S  LL L+ND+LD++
Sbjct: 567 FLSKMSHDMRTPMNGIIGLA--MIAGQHRHEPERMKEYLTKISVASRHLLGLINDVLDMS 624

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690
            ++AG + L      +  LL +V   +A         I+   D  +      D  RL Q+
Sbjct: 625 KIEAGRIVLVEEDFDVVALLRDVVDIVAPDARGRRHAIRFEVDETVFPFVKGDSLRLQQV 684

Query: 691 FSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           F  +LSNA+ F+ +G  + +  +         G + F   ++G  +       +F+ F  
Sbjct: 685 FMNLLSNALKFTPEGGHIGVSVSETASPFDGYGAYRFVFSDDGIGMSPAFMDKLFSPFER 744

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +    R  G GLG+ I ++ + +  G + + S     T     
Sbjct: 745 EENSMTSRVSGTGLGMPISKAIVEMMNGTIDVESERGRGTVFTVT 789



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 64/506 (12%), Positives = 140/506 (27%), Gaps = 84/506 (16%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTE-----------NNCLTIVWDGKDETP 93
           I +   L +        L EI  +  +Y++L               N   +      E  
Sbjct: 131 ISELVQLQRDNIRKERELEEIGREKERYNALFESVMCGIVQYRLLANGRVVFKSANSEAI 190

Query: 94  EIIGQLHQRIDIPQTDTDLLSFENW-----LKFHHYIKLSKATEKLRKEGQ--SFDLVAE 146
            I G   +            +   W     +    +  + +   +L K G    F+    
Sbjct: 191 RIFGYTPEA---------FWAVGEWNLEDLVAPEDWEDIRREISRLEKVGDSSPFEYRLR 241

Query: 147 TQNDCAIKIEGRV-----SGSCAFLR--ILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199
            ++     I GR          A  R   L +D       E  L  +++    ++ ++  
Sbjct: 242 KRDGSPCWIIGRAEILVDEEGEAVFRSVFLDIDESKKAEIENALLAEQVQAGNALLRLAL 301

Query: 200 DSLDFLVWHRDQAGDILW----------ANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
           +      +       +                Y    E+    F    G SR  F     
Sbjct: 302 EYTQAFEFFYYPESRLCIIPERTQTHYGCKARYAGMPESFADDFVD--GTSRDGFMAMYD 359

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--SFGEAGIAIDVSKEITVNDQLTH 307
           +          +F      +      +   V           GI  DV++E T   + T 
Sbjct: 360 RIHAGEKTASADFRGRNRNV--WCRVTLSTVTFSEGKPAYVVGIVEDVTREKTFELENTE 417

Query: 308 TYEILHNLTV------AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            + I   +         +A  ++ +Y    +  F +   + L       ++  L  F+  
Sbjct: 418 LHGIYDYILNTDYDLMGVADLEKGQYSLRFSDKFDD-RGMPLKGEIVQGNDWMLERFVHP 476

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-------GQTLHVIVTSNPRGGTIW 414
            ++      W    E + S  + S+++   +   +       G+  +     N     + 
Sbjct: 477 DDRARMAREWAV--ETVLSALEKSDSYTYYFRSDDDPPRYKEGKLSYFRGQKN---RLLL 531

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            F ++    + E +    +    +  +               K +N     L K   +  
Sbjct: 532 TFRDIHDVREKEERVRQTLTDALKVAE---------------KANNAKSDFLSKMSHDMR 576

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLF 500
           +P   I  +A    ++ +E +    +
Sbjct: 577 TPMNGIIGLAMIAGQHRHEPERMKEY 602


>gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
 gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
          Length = 1014

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 396 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 440

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 441 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 499

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 500 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 559

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 560 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 616

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 617 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 676

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 677 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 736

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 737 GGSIEIDSLPDFGTTVTVALPLRE 760


>gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 14]
          Length = 927

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 309 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 353

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 354 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 412

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 413 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 472

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 473 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 529

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 530 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 589

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 590 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 649

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 650 GGSIEIDSLPDFGTTVTVALPLRE 673


>gi|302551344|ref|ZP_07303686.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302468962|gb|EFL32055.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1359

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 15/262 (5%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +   +  R+   L EK   L  + + K+ F+ ++S+ELR+PL +++    LL  +  G 
Sbjct: 911  QMQQGELQRSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGH 970

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+ ++ Q+   I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +    
Sbjct: 971  LSDQEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPL 1030

Query: 662  MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------- 712
              +  +  +V     +     +D QRL QI   +LSNA+ F++ G  V L+         
Sbjct: 1031 TLDRGLAFEVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTATG-KVELRVDRVRDTEH 1089

Query: 713  --ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
               RD  D I FSV + G  I  +    +F  F        R   G GLGLSI      L
Sbjct: 1090 RFVRDADDVIAFSVSDTGIGIAPEKLPVIFEAFAQADGTTNRKYGGTGLGLSISREIAGL 1149

Query: 768  HGGHVSISSSDEGVTTINCRIP 789
             GG +   S     +T    +P
Sbjct: 1150 LGGRIVAESEPGKGSTFTLHVP 1171


>gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 823

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 9/303 (2%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R   ES G D    +   F++    +    E L+    E  +        +       + 
Sbjct: 106 RVRVESTGEDELGLLFACFNNMLAEISVRDERLALHSEELKLEVAERTGELSAVNRQLE- 164

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            ++  ++ +  ++ + A+  K+ F+  +S+E+R+P+  ++G T+LL  +    L  +QS+
Sbjct: 165 -QSLESVRQAMQSAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLGT---DLTKEQSR 220

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YVE +  S   LL+++N+ILD + ++AG M+L      L  L ++     A       + 
Sbjct: 221 YVETVRRSGEALLSIINNILDFSKIEAGRMELETIPFDLRQLASDAAAIFAEDAARKGLE 280

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNN 726
           + +  +  L   F+ D  RL Q+   +L NA+ F+ KG   + LK A +      SV++ 
Sbjct: 281 LSLELERGLPRMFLGDPGRLRQVMVNLLGNAVKFTLKGGVRLTLKLAEEPALVRISVEDT 340

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    +FN+F         +  G GLGL+I      L GG + + S     +  
Sbjct: 341 GIGIAPEARLRIFNQFAQGDESMTRKYGGTGLGLAIARQLTELMGGVLDVESEPGRGSCF 400

Query: 785 NCR 787
           +  
Sbjct: 401 SFT 403


>gi|254416897|ref|ZP_05030645.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176261|gb|EDX71277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1138

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 134/268 (50%), Gaps = 12/268 (4%)

Query: 534 PNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           PN+Q  L    + T   +  + LT KN  L + + +K+ F+ ++S+EL++PLT ++G + 
Sbjct: 432 PNSQLWLVMAQDATTQQQVAQELTAKNADLVQLNRLKDEFLAYISHELKTPLTAVLGLST 491

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LLK   LG LN +Q++Y   I  +   L+ +VNDILDL  ++ G ++L    + +  L +
Sbjct: 492 LLKDQLLGELNERQARYARLIYQNGRQLMAVVNDILDLTRMETGQLELTLEPVQIQSLCD 551

Query: 653 EVKQSIATKMHENN---------IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              Q       +NN         I   +  +  L + +AD  RL Q+ + +LSNA+ F+ 
Sbjct: 552 RAYQQALQVYSDNNPNHEGATPDISFVLDIEPGLDTIIADELRLRQMLAHLLSNALKFTD 611

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
             +TV LK    +G   F++ + G  IPED    +F +F         Q  G GLGL + 
Sbjct: 612 SQNTVGLKVNNQDGWIAFTIWDTGIGIPEDKQHLIFQKFQQLEEPLTRQFEGTGLGLVLT 671

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    LHGG +S  S +   +     +P
Sbjct: 672 QRLARLHGGDISFISKNGNGSEFTLLLP 699


>gi|154276398|ref|XP_001539044.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1]
 gi|150414117|gb|EDN09482.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1]
          Length = 2319

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ +VS++LR+P+  +IG ++LLK +   +L+ +Q  YV
Sbjct: 1790 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---NLDREQDGYV 1846

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + L + + EV +++     +  ++  
Sbjct: 1847 ESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTI 1906

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFS--V 723
               DG       + D  RL QIF  +LSN+  F+ KGS V +KA     D+G    +  V
Sbjct: 1907 EDLDGVDPKLLVLGDPVRLHQIFMNLLSNSYKFTPKGS-VTVKAKAADEDDGRIRITCKV 1965

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I  +    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 1966 ADTGIGISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGV 2025

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2026 GTTVTFTL 2033


>gi|119493836|ref|ZP_01624403.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119452428|gb|EAW33617.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 635

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 162/399 (40%), Gaps = 24/399 (6%)

Query: 413 IWMFENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           ++++E L   + +   +            ++  EG+    P+GR    N     +   + 
Sbjct: 228 VYLYERLQRAEFNARQQLEIAEAKYRSIFENAVEGLFQSTPEGRFLDVNKTLARMCGYQS 287

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT------SFDDERKSLQGTLELLSDSV 525
            +         +    S+ Y +      F  +I       +F+ +    +  +  +S++ 
Sbjct: 288 PQEMMAK----VTDIKSQMYVDPQRRTEFIRLIEEQGCVLAFESQVYHAESNIIWISENA 343

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                 P            +T+  RAE  + +  +  ++ + +K+ FV  +S+E R+PLT
Sbjct: 344 RAVRDAPGNIIVYEGDVEEITERKRAEAEMRKALQKEKELNLLKSRFVSMISHEFRTPLT 403

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+  T+ L+         K+ +Y   I  +   L +L+ND+L +   +A  +  N + I
Sbjct: 404 TIMASTEALEYYGHRWTEDKKDKYFSRIRVTIQHLTDLLNDVLIIGQSEAHKLPYNPTVI 463

Query: 646 VLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLGSF------------VADRQRLLQIFS 692
            L+     + + I    ++  N+ + +     L               ++D + L  IF 
Sbjct: 464 DLDSFCENLVEEIQITANKKCNLTLSIHGKNILNYLELAASQDSKILPISDERLLRHIFI 523

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +LSNA+ +S KG  + +K        + ++K+ G  IP +  K +F  F    + G   
Sbjct: 524 NLLSNAVKYSPKGGKIEMKLFYQATQVVVTIKDEGIGIPVEDQKHLFESFHRARNVGTIS 583

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+IV+  ++  GG +++ S     T     +P +
Sbjct: 584 GTGLGLAIVKRSVDRLGGTITVHSEVGKGTIFTVALPLQ 622


>gi|261211606|ref|ZP_05925893.1| signal transduction histidine kinase [Vibrio sp. RC341]
 gi|260838956|gb|EEX65588.1| signal transduction histidine kinase [Vibrio sp. RC341]
          Length = 569

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 8/240 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    +   +A++ K++F+  +S+ELR+PL  ++G  D+L+    G   S Q++ +E 
Sbjct: 194 RELRLAQKFAEQANQSKSNFLAMMSHELRTPLNAVLGLIDVLR----GDSTSYQAELLEQ 249

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+ +LL ++ND+LDL+ +++G   L+   + L   L++          E  I   V 
Sbjct: 250 MENSAELLLIIINDVLDLSRIESGHFSLHCHWVDLKKKLDQSLVYHRQIAQEKGIAFNVQ 309

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +   +   +  D  RL QI   I+ NA+ F+  G  V +          F VK+ G  I 
Sbjct: 310 THINERLEYYTDSARLTQILFNIVGNAIKFTKSG-QVDIDLIYGTHQVTFRVKDTGIGIE 368

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F  F+   +       G GLGL+I +  I L GG + + S  E  TT   ++P
Sbjct: 369 KNRIDRLFTPFIQADNSITRNYGGTGLGLAITKHLIELMGGSIQVESELEVGTTFILQVP 428


>gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
 gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
          Length = 1159

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 13/321 (4%)

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G ++  I A  SR     +     A  + +  +E +S Q  L+L +  + E +   L   
Sbjct: 628 GVNVNTIIA-NSRTDALLEESQRLAGELQARSEELQSRQEDLQLSNAELEEKAT--LLAR 684

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q     V   +  +A + L E+   L  A + K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 685 QNHDIEVKNAEIEQARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQ 744

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +L +KQ +Y   I  + + LL L+NDILDL+ V+AG M ++   +VL DL  ++K 
Sbjct: 745 NPTRNLTAKQVEYAHVIHTAGSDLLQLINDILDLSKVEAGKMDIHLERVVLRDLAEDLKS 804

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +    E  +R  V     + +  + D+ RL Q+   +LSNA+ F+ +GS  +   A  
Sbjct: 805 TFSPITVEKGLRFTVDLAPGIPADLLTDQHRLAQVLRNLLSNAVKFTERGSVELAIVATL 864

Query: 716 NGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            GD         F V + G  I E+  + +F  F         +  G GLGLSI      
Sbjct: 865 GGDLSPATPSVTFKVTDTGVGIAEENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVAA 924

Query: 767 LHGGHVSISSSDEGVTTINCR 787
           L GG +   S     +T + R
Sbjct: 925 LLGGEIEARSEFGRGSTFSLR 945


>gi|23015293|ref|ZP_00055073.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 770

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 98/544 (18%), Positives = 209/544 (38%), Gaps = 54/544 (9%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            + T         + +  +    A+FD +  L   N ++V L ++    +       E++
Sbjct: 84  AKETAEKAQQRLRDAIETVPEGFALFDSDDRLVLWNSNYVGLLKVLGQNVRVGTPFAEVI 143

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
               +   + + +  +         Y         + L +G+ + V       GGT+ ++
Sbjct: 144 HTAVANGAIRDAIGREEEWAAERIAYHHHPGRSYIYRLNDGRWVQVNERRTQEGGTVSLY 203

Query: 417 ENLTV-----QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            ++T      +   E +      +   T++ L++GVAVF    R+   N  +  L +  +
Sbjct: 204 TDITEIKEMEEKRRERELAEKSVLLQATLESLTQGVAVFDRSLRLVAWNQRYIDLHRFPD 263

Query: 472 NRLSPGTHIRNIAATCSRY--YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             +  GTH   +    +    Y   D  D  A  I +            +L    +++ +
Sbjct: 264 GLVHEGTHYSEVLRINAERGEYGPGDPLDYVAGRIAAALTNL-PRAFERQLSDGRIVDVA 322

Query: 530 IIPLPNAQTMLTFVNVTDSVRAE--------------RALTEKNEALRKA---------- 565
              +P+   + T+  +T+   A+              R L + NE+L +           
Sbjct: 323 SNRMPDGGFVNTYSEITERKLADIRLRDSEHRLKIAARELQQANESLERRVDQRTAELSA 382

Query: 566 ---------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
                          +  K  F+   S++L  PL     F   L       ++      V
Sbjct: 383 ANQALHLAKISAELANASKTKFLAAASHDLHQPLNAARLFVAALAEH--DGMDRNNRDLV 440

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  +   +  L+  + D++ +DAG+M  +++   +  LL+++++    +  +N I ++
Sbjct: 441 SSIDNALEAIDGLLRALFDISKLDAGVMTADFADFEVAPLLDQLRKEYLPQARDNGIDLR 500

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V+      +  +D + L +I    LSNA+ ++ KG  ++L   R     +  V ++G  +
Sbjct: 501 VM--PCRAAIRSDPRLLARILRNFLSNALRYTEKG-RILLGCKRSGNRLLIGVWDSGIGV 557

Query: 731 PEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE+    +F  F   A   R + +G+GLGL+IVE    L    +++ S     ++ +  +
Sbjct: 558 PEEKLAEIFQEFQQVALPGRRREKGMGLGLAIVERISRLLDHPITVHSRLGVGSSFSISV 617

Query: 789 PSKE 792
           P  E
Sbjct: 618 PVAE 621



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 85/308 (27%), Gaps = 37/308 (12%)

Query: 175 YSELAETTLKCK----------------KLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
             E     L+                           +   +++       D    ++  
Sbjct: 59  RVEERTIQLEAALRQLESVNADLSRAKETAEKAQQRLRDAIETVPEGFALFDSDDRLVLW 118

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH------- 271
           N +Y    +  G   +     +  +        +  +   E+ +        H       
Sbjct: 119 NSNYVGLLKVLGQNVRVGTPFAEVIHTAVANGAIRDAIGREEEWAAERIAYHHHPGRSYI 178

Query: 272 ---GNNKSYKI-VRVLNSFGEAGIAIDVSK---------EITVNDQLTHTYEILHNLTVA 318
               + +  ++  R     G   +  D+++         E  + ++       L +LT  
Sbjct: 179 YRLNDGRWVQVNERRTQEGGTVSLYTDITEIKEMEEKRRERELAEKSVLLQATLESLTQG 238

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           +A+FD++  L   N+ +++L       +       E+L       +     +   +    
Sbjct: 239 VAVFDRSLRLVAWNQRYIDLHRFPDGLVHEGTHYSEVLRINAERGEYG-PGDPLDYVAGR 297

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
            +   ++        L +G+ + V     P GG +  +  +T +   + +          
Sbjct: 298 IAAALTNLPRAFERQLSDGRIVDVASNRMPDGGFVNTYSEITERKLADIRLRDSEHRLKI 357

Query: 439 TIDHLSEG 446
               L + 
Sbjct: 358 AARELQQA 365


>gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
 gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
          Length = 1035

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 417 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 461

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 462 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 520

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 521 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 580

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 581 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 637

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 638 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 697

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 698 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 757

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 758 GGSIEIDSLPDFGTTVTVALPLRE 781


>gi|88857621|ref|ZP_01132264.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas tunicata D2]
 gi|88820818|gb|EAR30630.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas tunicata D2]
          Length = 927

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 6/262 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L N  +        +  R    LT+      +A++ K+ F+ ++S+E+R+P+  ++G   
Sbjct: 527 LNNKLSEFNHELAIEVERKTFELTQSVHIAEQANKAKSIFLANMSHEIRTPMNGMMGMLS 586

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           ++   K  SLN      ++ I +S+  L+ ++NDILD + ++AG + +  + + L  +  
Sbjct: 587 IVL--KQPSLNPDVVDKLQLIQSSAQTLMQILNDILDFSKIEAGQLTIEQAPVDLKAVFK 644

Query: 653 EVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           E          + N+  ++   +      + D  RL QI   +L+NA  F+  G  + + 
Sbjct: 645 ESCDIFLMSSIKPNVEFRLEGIENLPDQLLCDALRLRQIIVNLLTNAGKFTPCGH-IKVL 703

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
            + D     FSV + G  I ++    +FN F        R   G GLGL+I    + L  
Sbjct: 704 VSYDEEYLRFSVADTGIGIAKEKQALLFNEFSQADVSTTRKYGGTGLGLAICSRLVTLLE 763

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G++ + S +   +     +P K
Sbjct: 764 GNIELQSEEGKGSCFTVSLPMK 785


>gi|134293593|ref|YP_001117329.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134136750|gb|ABO57864.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 664

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 154/378 (40%), Gaps = 20/378 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            LE   +  + +    +D   + +       RI   N A R ++  +            I
Sbjct: 135 SLEHAPSDDLALLHSVVDASPDAIVGVDAGRRIVSWNRAARRIFGVDATAAIGRDVTTLI 194

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF- 542
           A    R       ++   A +  FD       G     S     ++  P+ +A    T  
Sbjct: 195 APRWLRLQPLPASFEHPRAAVGPFDVLCVRGDGGRFRAS-----FAAAPIVDAGGNCTGL 249

Query: 543 ----VNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                      R ER    AL        +++ +K+  +  VS+ELR+PL  I G+ ++L
Sbjct: 250 SITLREADQRRRDERGHLRALRGARVQADQSNRLKDELLSTVSHELRTPLNVIYGWVEVL 309

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           ++    +      Q ++ I  S+  L  +V D+LD +++  G  +L  + + L  ++ + 
Sbjct: 310 RSVDGQAF---AQQAIDAIDRSARSLSRMVGDLLDASSLATGRTRLERAPVDLVRIVRDA 366

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + +      N I +            AD +RL Q+ S +LSNA+ F+  G  + +  AR
Sbjct: 367 VRELGGSADANGIALSTDCALTNCVISADGERLRQVLSNLLSNAIKFTPSGGRITVSLAR 426

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
                  +V + G  I  +    +F+ F     A    +RG+GLGLSIV + + LHGG V
Sbjct: 427 AGARVRMAVTDTGHGISAERLPHLFDTFNRPEGAAASPKRGLGLGLSIVRNIVRLHGGDV 486

Query: 773 SISSSDEG-VTTINCRIP 789
           + SS   G  TT+   +P
Sbjct: 487 AASSPGAGLGTTVTVTLP 504


>gi|319893720|ref|YP_004150595.1| Two-component sensor kinase SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163416|gb|ADV06959.1| Two-component sensor kinase SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 610

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 165/400 (41%), Gaps = 31/400 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+GV      GR+
Sbjct: 227 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGVIATDRRGRV 286

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +S G  I ++       ++  +  +   +++   ++E    +G
Sbjct: 287 RIINDMALKMLGKSKEEVS-GHFIFDVLD-LQDEFSLEELNENNDSVLIDINEE----EG 340

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++ S +      + +   +  ++ V   V  ++ +          +  +  FV +V
Sbjct: 341 IIARVNFSTI------VQDTGFVTGYIAVLHDVTEQQQI----------ERERREFVANV 384

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+        S   Q++      +  ++ LVND+L L+ +D  
Sbjct: 385 SHELRTPLTSMNSYIEALEEGAWRD-ESIAPQFLSVTREETERMIRLVNDLLHLSKMDNE 443

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
              +    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 444 TETITKEIVDFNMFINKIINRHEMAA--KDTTFVRDIPRETIFTEVDPDKMTQVFDNVIT 501

Query: 697 NAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V      +  +      +K+NG  IP +    +F+RF        R   
Sbjct: 502 NAMKYSRGEKRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIFDRFFRVDKARTRKMG 561

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G GLGL+I +  +  H G +  +S +   T+I   +P ++
Sbjct: 562 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEK 601



 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  +   D+   ++  N   +++       ++ +      
Sbjct: 254 EAQANTESEKRRLDSVITHMSDGVIATDRRGRVRIINDMALKMLGKSKEEVSGH------ 307

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             F+     L ++ + +   EN  SV       +      N  T  ++  +    G I +
Sbjct: 308 --FIFDVLDLQDEFSLEELNENNDSVLIDINEEEGIIARVNFST--IVQDTGFVTGYIAV 363

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 364 LHDVTEQQQIERERREFVANVSHELRTPLTSMNSYIEALEEG 405


>gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis
           TXDOH]
          Length = 926

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 95/402 (23%), Positives = 172/402 (42%), Gaps = 27/402 (6%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIK 457
            L V+     R G I  +      ++ E    T+++           G+ +    DG + 
Sbjct: 291 MLWVVAVQFDRKGLIPNYRRAQRLLESEVLNRTILR-------TAPVGLGLLSAQDGSVL 343

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L N A   L         P         T  R  +E     L    I   D     LQ  
Sbjct: 344 LQNNAMLELSARTSGEPLPNRLWDAYRQTTGRSNDEDGALLLHDLAIEREDSNPIYLQAN 403

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +                    + T ++++    +E  L E   A  +A++ K++F+  +S
Sbjct: 404 VVAARYRGANV---------LLCTLLDISMRKESELKLKEARIASDQANKAKSTFLATMS 454

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  IIG  +LL+ S+   L+++QS+ ++ + + S  LL+++NDILDL+ V++G 
Sbjct: 455 HEIRTPLNAIIGNLELLRRSQ---LSNQQSERLQVVESCSNALLHIINDILDLSKVESGQ 511

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILS 696
           M L      +  LL E+  + A       ++ +  + +G    +  D  R+ QI S ++ 
Sbjct: 512 MTLENIPFDIQALLQEIVDAYAPLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIG 571

Query: 697 NAMDFSSKGST-VIL---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           NA+ F+ +G   V +   KAA+ +      V + G  I  D   ++F+ +        RR
Sbjct: 572 NAIKFTERGHISVDVHQAKAAQGDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRR 631

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL + +    + GG + + S  +  TT+   +P +E
Sbjct: 632 FGGSGLGLPLCKRLATIMGGSIEVDSLPDFGTTVTVVLPLRE 673


>gi|149375905|ref|ZP_01893672.1| PAS [Marinobacter algicola DG893]
 gi|149359785|gb|EDM48242.1| PAS [Marinobacter algicola DG893]
          Length = 1197

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 159/385 (41%), Gaps = 22/385 (5%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +  V+  ++    +       D+L   V+V+      +  N A+   W       + G +
Sbjct: 336 SKVVEKTSELRESLDFINTLTDNLPLTVSVWDSQLNCRFMN-AYGEHWFPFSKEAAIGQN 394

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  +         +        A+         SL+     + D V+ Y  + L   Q  
Sbjct: 395 LEQL---LGPDLVKERNIHYQQALEGRSVQASASLENRNGEIRDVVVSYHPVTLQGEQCF 451

Query: 540 L-TFVNVTDSVRAERALTEKNEALRKADEI-------KNSFVQHVSYELRSPLTNIIGFT 591
           + T ++VT+ V+ E+ L   N  L++  +        K +F+ ++S+E+R+P+  IIG  
Sbjct: 452 MATTIDVTEIVQREKELEVLNAELKEQKQEAESAVTVKTAFLANMSHEIRTPMNAIIGVL 511

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+ + L        + V+   ++S  LL L+NDILDL+ ++A  ++L+     ++ L+
Sbjct: 512 VLLQEAGLEDHP---RRLVKKAFSASEALLQLLNDILDLSKIEADHIELDIHPFDIDALV 568

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VI 709
           +      A    E  ++++V  D         D  R+ QI + ++ NA+ F+ KG   V 
Sbjct: 569 HRSVDLFAIVAEEKGLKLRVSIDPTTPNRVAGDLLRISQICTNLVGNAVKFTRKGGIDVR 628

Query: 710 LKAARD---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           +    +   +G     V + G  I  +    VF  F        R   G GLGL+I    
Sbjct: 629 IDYRAESQASGYLRIEVADTGVGIKPEDQGRVFENFRQADESTSRNFGGTGLGLAISRRL 688

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
            +L    +++ S     +T    +P
Sbjct: 689 ADLMEAELTLKSDVGEGSTFQLLVP 713


>gi|91772785|ref|YP_565477.1| signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
 gi|91711800|gb|ABE51727.1| pleC-like signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 383

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/248 (33%), Positives = 137/248 (55%), Gaps = 2/248 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +  +S   +R L E    L  A  +K+ F+  +SYELR+PL +IIGF+D+L+T ++G LN
Sbjct: 132 HAYESEILKRTLIETKIDLDDACHVKSDFLASMSYELRTPLNSIIGFSDVLRTEEIGPLN 191

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ +Y++ +S S   LL L+N +L+L  +++G ++L    + +++++ EVK  +  +  
Sbjct: 192 EKQLKYLKNVSTSGKELLELINGLLELLKIESGKVQLQVEDVDVSEVIQEVKVLLEPRTV 251

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E NI +       +GS  ADR +   +   +++NA++F S   T+   A     D   ++
Sbjct: 252 EKNISLVCNVRSDVGSIKADRAKFKDVLYDLINNAINFVSDDETIRCYATVHESDLYVTI 311

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
              G  IPE+  K+VF  F  V N H  + +G GL L IV+  + LHGG + I S  E  
Sbjct: 312 HYTGVGIPEEELKNVFQPFINVRNFHVQKYQGTGLRLPIVKKIVELHGGAIWIESKPENG 371

Query: 782 TTINCRIP 789
           +T    IP
Sbjct: 372 STFTFTIP 379


>gi|46906529|ref|YP_012918.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091425|ref|ZP_00229222.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|226222924|ref|YP_002757031.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254825659|ref|ZP_05230660.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|254853438|ref|ZP_05242786.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|254932516|ref|ZP_05265875.1| sensory box histidine kinase [Listeria monocytogenes HPB2262]
 gi|255520928|ref|ZP_05388165.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J1-175]
 gi|300764579|ref|ZP_07074571.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|46879794|gb|AAT03095.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020102|gb|EAL10838.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|225875386|emb|CAS04083.1| Putative two-component sensor histidine kinase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606808|gb|EEW19416.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|293584071|gb|EFF96103.1| sensory box histidine kinase [Listeria monocytogenes HPB2262]
 gi|293594904|gb|EFG02665.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|300514686|gb|EFK41741.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|328476128|gb|EGF46837.1| two-component sensor histidine kinase [Listeria monocytogenes 220]
          Length = 610

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +L     L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTLDKPYVLRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKTKGTIIKFTLP 600


>gi|323463222|gb|ADX75375.1| two-component sensor histidine kinase VicS [Staphylococcus
           pseudintermedius ED99]
          Length = 610

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 165/400 (41%), Gaps = 31/400 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+GV      GR+
Sbjct: 227 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGVIATDRRGRV 286

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +S G  I ++       ++  +  +   +++   ++E    +G
Sbjct: 287 RIINDMALKMLGKSKEEVS-GHFIFDVLDLRDE-FSLEELNENNDSVLIDINEE----EG 340

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++ S +      + +   +  ++ V   V  ++ +          +  +  FV +V
Sbjct: 341 IIARVNFSTI------VQDTGFVTGYIAVLHDVTEQQQI----------ERERREFVANV 384

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+        S   Q++      +  ++ LVND+L L+ +D  
Sbjct: 385 SHELRTPLTSMNSYIEALEEGAWRD-ESIAPQFLSVTREETERMIRLVNDLLHLSKMDNE 443

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
              +    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 444 TETITKEIVDFNMFINKIINRHEMAA--KDTTFVRDIPRETIFTEVDPDKMTQVFDNVIT 501

Query: 697 NAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V      +  +      +K+NG  IP +    +F+RF        R   
Sbjct: 502 NAMKYSRGEKRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIFDRFFRVDKARTRKMG 561

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G GLGL+I +  +  H G +  +S +   T+I   +P ++
Sbjct: 562 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEK 601



 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  +   D+   ++  N   +++       + +     ++
Sbjct: 254 EAQANTESEKRRLDSVITHMSDGVIATDRRGRVRIINDMALKMLGKSKEEV-SGHFIFDV 312

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L+ LR    L E        EN  SV       +      N  T  ++  +    G I +
Sbjct: 313 LD-LRDEFSLEE------LNENNDSVLIDINEEEGIIARVNFST--IVQDTGFVTGYIAV 363

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 364 LHDVTEQQQIERERREFVANVSHELRTPLTSMNSYIEALEEG 405


>gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 932

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 123/242 (50%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q+ Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQTDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE  + I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  + ++    +GD     F V++ G
Sbjct: 392 VDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CR 787
             
Sbjct: 512 FT 513


>gi|169334065|ref|ZP_02861258.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258782|gb|EDS72748.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM
           17244]
          Length = 734

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 119/250 (47%), Gaps = 10/250 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     +AL +  E  R A+  K  F+  +S+++R+P+  I+G T + K +K      K 
Sbjct: 452 EQEAHNQALKDAYEMARNANNAKTDFLSSMSHDIRTPMNAIMGMTVIAKNNKDNV--EKL 509

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ I  SS  LL+L+ND+LD++ +++G + LN   + L+ ++++V   I     + +
Sbjct: 510 EDCLDKIETSSNHLLDLINDVLDMSKIESGKVTLNEEPLDLDSIIDDVLNIILPTARDKH 569

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FI 720
           I +K+  +        D  R+ QIF  ILSN++ F+ K   + +       +      + 
Sbjct: 570 ITVKLNKEINHAFVQGDVLRINQIFLNILSNSVKFTPKNGNIQIFIREITPEYKNYISYE 629

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F   +NG  + E+    +F  F  +         G GLG+SIV++ +++  G + + S  
Sbjct: 630 FKFIDNGIGMSEEFKDKIFTPFARSEESIIKNVEGTGLGMSIVKNIVDMMNGEIYVKSKI 689

Query: 779 EGVTTINCRI 788
              +     +
Sbjct: 690 NKGSEFTVIL 699


>gi|315301282|ref|ZP_07872500.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596]
 gi|313630342|gb|EFR98257.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596]
          Length = 610

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++     ++      ++    +  S   +R +      L ++    +
Sbjct: 301 AK-HESANGRSIIDVLDIGDKF-----QFEDLMEVDGSLTMDRSTSDKPYILRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGRERLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +        +E  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFEMMKNE-TIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +PE+   ++F+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKYENEIEVSIADEGLGVPEEDLATIFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKTKGTIIKFTLP 600


>gi|331659497|ref|ZP_08360439.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
 gi|315297924|gb|EFU57194.1| PAS domain S-box [Escherichia coli MS 16-3]
 gi|331054079|gb|EGI26108.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
          Length = 778

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 16/375 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L +++   
Sbjct: 313 ---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQLVDFTSFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 ALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T    I
Sbjct: 489 VTSEQGKGSTFTLTI 503



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG-IYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    G +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    +   
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPAD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RVLNSFGEA 289
           ++  E   ++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKRYQDALER 278


>gi|312194418|ref|YP_004014479.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311225754|gb|ADP78609.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 1425

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 141/295 (47%), Gaps = 16/295 (5%)

Query: 512  KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
            +S + T EL S SV           +  L     T+  +A   L EK E L  + + K  
Sbjct: 877  QSQRLTQELRSQSVELQRTNAELEEKAQLLEEKNTEIEQARTGLEEKAEQLALSSQYKTE 936

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ ++S+ELR+PL +++    LL  ++  +L  +Q ++   I +S + LL L+NDILDL+
Sbjct: 937  FLANMSHELRTPLNSLLILAKLLADNQDDNLTYQQIEFARTIHSSGSELLMLINDILDLS 996

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQI 690
             V+AG M +  + +    + + + Q++        +  +V ++D     FV D QR+ Q+
Sbjct: 997  KVEAGKMDVEATAVGTAAMCDALAQAVRPVAEVKGLTFEVQVADDVPAEFVTDEQRIQQV 1056

Query: 691  FSKILSNAMDFSSKGSTVI-LKAARDNGDFI------------FSVKNNGSSIPEDMCKS 737
               +LSNA+ F+  G+  + +  A  +G FI            F+V + G  I  D  + 
Sbjct: 1057 LRNLLSNAVKFTDSGTVRLDVTVASSDGPFIVPSLRSAPTVLSFAVSDTGIGIATDKLRM 1116

Query: 738  VFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F  F         +  G GLGLSI +    L GG +++SS     +T    +PS
Sbjct: 1117 IFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSSVLGQGSTFTLYVPS 1171


>gi|160888884|ref|ZP_02069887.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492]
 gi|317479383|ref|ZP_07938517.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156861783|gb|EDO55214.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492]
 gi|316904457|gb|EFV26277.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 446

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 171/387 (44%), Gaps = 31/387 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKLSNPAFRSLWKTEENRL-- 474
           +TV+   E +        G  ++++   + V  F     +  +N +    +   E+    
Sbjct: 78  ITVREYKEREVRASN-TLGSIMNNMGVDIYVNSFDSHD-MLYANRSMVEPYGGIEHFWGK 135

Query: 475 -SPGTHIRNIAATCS----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                   +    C     R+  + +G       + S+D +R   +    + S      +
Sbjct: 136 KCWEALYSDKTGECEFCPKRHLIDENGHPTK---VYSWDYQRPFDKCWFRVFS------A 186

Query: 530 IIPLPNAQT--MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                + Q   ++T V++    + E  L    +     D +K++F+ ++S+E+R+PL +I
Sbjct: 187 AFAWVDGQMAHVITSVDIDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSI 246

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +GF  ++          ++ +Y+  +  ++ +LL L++DILDLA ++AG +  N   + +
Sbjct: 247 VGFASIIAEL---DDREERQEYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDV 303

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +D   +V ++   K  +  + + +  D        D++RL+Q+ +  ++NA+ F+S+G  
Sbjct: 304 SDFCKDVMRNYDIK-EDKAVPVLLAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSEG-Q 361

Query: 708 VILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
           ++L+       G   FSV + G  I  D   +VF+RFV        +G GLGLSI +S I
Sbjct: 362 ILLEYHPVEGTGQIEFSVTDTGMGIAPDAVATVFDRFVKLNTFA--KGTGLGLSICKSII 419

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
              GG +   S     +    R P  E
Sbjct: 420 EHLGGTIGTESELGVGSRFWFRHPCAE 446


>gi|160885771|ref|ZP_02066774.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
 gi|156108584|gb|EDO10329.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
          Length = 563

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 107/517 (20%), Positives = 212/517 (41%), Gaps = 47/517 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              N     +++IL NL   I + D   +    + N+       I     A   ++ E+ 
Sbjct: 67  KKTNHSYRFSFDILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEE-AIGHTDYEIY 125

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGTI 413
              R          ++   + +    K     ++ +  P+G    T+ V    +  G   
Sbjct: 126 GEERGE-------KYRHIDKELIQEGK-VYRKEEKYTTPDGITHDTIAVKSIISWEGEKK 177

Query: 414 WMF---ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           W+     ++T   + E +           +K Q   +  +  G+     + R+      +
Sbjct: 178 WLLATRWDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRV-----QW 232

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +              I    S   NE  G   F   I      R ++      + D
Sbjct: 233 EETRQIASLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTI-----RVDD 287

Query: 524 SVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              E +  P+   +        +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++
Sbjct: 288 VDFEVTATPVFGDEKETEIIGGLLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANM 347

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF++++  ++       + ++V+ IS+++ +LL L++DILDL+ ++AG
Sbjct: 348 SHEIRTPLNAIVGFSEMICQTEEEEE---RKEFVKIISSNNILLLQLIDDILDLSKIEAG 404

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   +N+L+  + + +  K    +++I             DR RL Q+     +
Sbjct: 405 TMEFTFAQTDINELMEGICRQMQEKNSSPDVQILFTEKADQCMMYTDRIRLSQVIINFTN 464

Query: 697 NAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           NA+ F+ KGS  +  +      +  F VK+ G  IP D    VF RFV        +G G
Sbjct: 465 NALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSF--IKGTG 522

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+I    +   GG + + S +   +    RIP  E
Sbjct: 523 LGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPRSE 559


>gi|89097898|ref|ZP_01170785.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087400|gb|EAR66514.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 933

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 137/298 (45%), Gaps = 25/298 (8%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           +E +S    L ++++ + E         +T        D  +A + + EK E L  + + 
Sbjct: 469 EELQSQSEELRMINEQLEE---------RTRDAEKKSRDLQQANKDIEEKAEQLLLSSKY 519

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL +I+  +++L   +   +  +Q +  + I +S   LL+L+NDIL
Sbjct: 520 KSEFLANMSHELRTPLNSILLLSEMLSEGQGEEIPEEQKEVAKVIHSSGKDLLSLINDIL 579

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           DL+ ++AG + + +  + L++L + ++ + +    + N+   +     L      D+QR 
Sbjct: 580 DLSKIEAGKLDMLFEEMNLSELPSYLEYNFSHLAQKKNLDFNISIAEDLPGIMYTDQQRF 639

Query: 688 LQIFSKILSNAMDFSSKGST-VILKAARDNG------------DFIFSVKNNGSSIPEDM 734
            QI   +LSN+  F+ KGS  + +  A                     V + G  IPE  
Sbjct: 640 QQIIKNLLSNSFKFTEKGSVSIEVNLADPEKTKNLPLKSKTDFWTEIKVSDTGIGIPESK 699

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F  F         +  G GLGLSI   F  L GG + + S +   +T    IPS
Sbjct: 700 QSIIFEAFQQGDGASVRKYGGTGLGLSICREFAKLLGGWIFVDSEEGKGSTFTLFIPS 757


>gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1798

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 157/367 (42%), Gaps = 36/367 (9%)

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            G I+L+  AF+     + + LS    +  + AT     + +   +          ++ + 
Sbjct: 1215 GVIELA--AFQQFTHIQRDFLSQ---LAEMIATSVNTISVNTKTEELLKQSQELTEQLRD 1269

Query: 514  LQGTLELLSDSVLEYSIIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                LE+   + L+ S   L +       Q     V  T+   A + L E+ E L  +  
Sbjct: 1270 RSEELEVRQKA-LQASNAELEDKAELLARQNRDIEVKNTEIEDARQVLEERAEQLAVSMR 1328

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ E I  + + LL L+NDI
Sbjct: 1329 YKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSDLLQLINDI 1388

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
            LDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  +   D QR
Sbjct: 1389 LDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQR 1448

Query: 687  LLQIFSKILSNAMDFSSKGSTVILK---------------------AARDNGDFIFSVKN 725
            LLQ+   +LSNA+ F+  G+  ++                      A  D     FSV +
Sbjct: 1449 LLQVLRNLLSNAVKFTDSGAVELVIRPAAADVPDAIREQLLEAGSLADADADLIAFSVTD 1508

Query: 726  NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  I     + +F  F         +  G GLGLSI      L GG +  +S     +T
Sbjct: 1509 TGIGIASGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGST 1568

Query: 784  INCRIPS 790
                +P 
Sbjct: 1569 FTLYLPL 1575


>gi|222085300|ref|YP_002543830.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221722748|gb|ACM25904.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 510

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 165/371 (44%), Gaps = 18/371 (4%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS---- 488
           V+ +   ++  S  V +F P G +       R+ + +     S    I  +  +      
Sbjct: 98  VEHRDLMLEAASGLVLLFDPQGSVTTVGGRDRAEFLSWMRDPSGRGFIEQVHISDRILFL 157

Query: 489 ------RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                 R   ++ G DL        +   + +   +E+ +    E  +  +  +Q+    
Sbjct: 158 QAVDTLRQGRDALGVDLRLERSAVIEGNDQFIHIRMEMSARRDGEGRLTSIV-SQSRDIS 216

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +      A+R    K      A++ K+ F+  VS+ELR+PL  I+GF+D+L     G L
Sbjct: 217 YDQQLRDEADR----KTAEAESANDAKSRFLAAVSHELRTPLNAILGFSDILSGEYFGKL 272

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N++Q +YV  I  S   LL++VN +LD++ ++AG  +L      +   +   +  +A +
Sbjct: 273 ENNRQREYVGLIRQSGAHLLSVVNTMLDMSKIEAGRYELVPEPFPIEASIGACEAMLALQ 332

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E  + +       LG  VAD++ + Q+   ++ NA+ F+  G  V + AA  +G    
Sbjct: 333 AKEKGLTLTSRVQRGLGDIVADQRAIQQVLINLVGNAIKFTDAGGAVTIDAAMADGMLKL 392

Query: 722 SVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV + G  I  D   S+   FV   N +  +  G GLGLS+V+  + LHGG  +I+S+  
Sbjct: 393 SVCDTGIGIAADRLASLGQPFVQIQNDYTRRYAGTGLGLSLVKGLVGLHGGSFAIASAPG 452

Query: 780 GVTTINCRIPS 790
             T I   IP 
Sbjct: 453 EGTVITILIPL 463


>gi|329939932|ref|ZP_08289214.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
 gi|329300758|gb|EGG44654.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
          Length = 646

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 24/278 (8%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 145 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 204

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G+L+ KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 205 NAEGNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEA 264

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---- 711
           +      E  +   V    +L  +   D QRLLQ+   +LSNA+ F+  G+  ++     
Sbjct: 265 TFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAG 324

Query: 712 -----------------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
                            A  +     FSV + G  I     + +F  F         +  
Sbjct: 325 QDVPQAIREQLLEAGSLADPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYG 384

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           G GLGLSI      L GG +   S     +T    +P 
Sbjct: 385 GTGLGLSISREIARLLGGEIHAQSEPGRGSTFTLYLPL 422


>gi|315125164|ref|YP_004067167.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013677|gb|ADT67015.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 908

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R+L +  +    A++ K+ F+ ++S+E+R+PL  +IGF+ L K+          + Y+  
Sbjct: 523 RSLVKAKQQSDLANQAKSRFLANMSHEIRTPLNAVIGFSTLAKSEDSA---ETLTGYLNK 579

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ +S  LL+L+ND+LD++ +++  + L  +   LN LL  +         +  I  KV 
Sbjct: 580 INLASKSLLSLINDVLDISKIESQKLTLEVAPFDLNALLARISSMFEQSAEQKGINWKVD 639

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNG 727
           +       F  D  R+ QI   + SNA+ F+ +G   +   +++          ++K++G
Sbjct: 640 NQLPTDIWFEGDVMRIEQILLNLCSNAIKFTYEGEVSVSAYSKEITDRRRQITLTIKDSG 699

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I       +F+ F        R   G GLGL+I +    L  G +S+ S     +T  
Sbjct: 700 IGIAPSEQSKLFDAFTQADSSTSRKFGGTGLGLAIAKELSLLMSGDISVQSEPGKGSTFT 759

Query: 786 CR 787
             
Sbjct: 760 LS 761


>gi|268607932|ref|ZP_06141663.1| multi-sensor signal transduction histidine kinase [Ruminococcus
           flavefaciens FD-1]
          Length = 509

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 150/336 (44%), Gaps = 12/336 (3%)

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N +   L + +   ++    I            + +       I T   +E  +L   ++
Sbjct: 179 NASGDFLKEGKGYMIAWDNMINFTDTELCVGILKCEANSSVTPIKTLASEEASTLIDNMD 238

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            L    +   I  L +   +   V+   S +    +  +++ L + +E+K +F+   S+E
Sbjct: 239 SLFRKYIYIMIASLFSIFIVFIIVSAVLSKKLSDPVVSEHDMLVRVNEMKTAFLSDASHE 298

Query: 580 LRSPLTNIIGFT-----DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           L++PL+ + G+      +LL   +  S+  K    ++ IS+ +  +  +V  ILD   ++
Sbjct: 299 LKTPLSAMSGYAQNAEIELLNGGEKRSVQEK----LKRISSEANRMALMVTQILDATRIE 354

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            G M L  S+  L+ L+ E  ++  + +++NN R+ +    +L S  AD  RL ++F  +
Sbjct: 355 EGRMVLELSSCDLDGLVRETVETYFSVLNKNNNRLALRIPLELPSVEADPSRLKRVFVNL 414

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           +SNA+  +  G T+++KA  D G    +VK+ GS I  +    ++ R+    H     G 
Sbjct: 415 ISNALKHTYNG-TILIKAEADEGFIKVTVKDTGSGISPEDMPHIWERYYKGKHSET--GT 471

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL I +  I  HGG +   S     T     +P 
Sbjct: 472 GLGLFICKFIIESHGGKIWAESELGKGTEFTFTLPL 507


>gi|256005870|ref|ZP_05430818.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255990174|gb|EEU00308.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316941556|gb|ADU75590.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 463

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 120/235 (51%), Gaps = 3/235 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + +    ++KN F+  +S+ELR+PLT+I+G+   + +  + S   +  + ++ I 
Sbjct: 231 LNYMAQEVANHQKMKNDFIASISHELRTPLTSIMGWIITINSGDIDS-KEELKEGLDIIE 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L  LV+++LD +  DAGI+ L  S + L +LL  +K+ +  +     I + +  D
Sbjct: 290 RESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDVD 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD  RL Q+F  I+ N+  F+ KG  + +   ++    +  ++++G  IPE+ 
Sbjct: 350 EHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENGVLIRIEDSGCGIPEED 409

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              V  RF   ++     G GLGL+I +  + LH G + I S+    T ++  +P
Sbjct: 410 LPRVKQRFFKGSNVVS--GSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILP 462


>gi|323486812|ref|ZP_08092130.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum
           WAL-14163]
 gi|323399825|gb|EGA92205.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum
           WAL-14163]
          Length = 1032

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                    + K  F+  +S+E+R+P+  I+G T  +  S  G+   +  + +E +  SS
Sbjct: 641 MKARADAVSQAKTDFLSRMSHEIRTPMNAIVGMT-AIARSAAGN-KEQVLECLEKLDNSS 698

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+LVNDILD++ +++G M+LN + ++L+  L+ + + +  +     +   + +D + 
Sbjct: 699 KYLLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSIDEMVRMQTEAKGLSFTIQNDCRT 758

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIP 731
                AD+ RL Q+   ++ NA+ F+  G ++ L       +       FS+ + G  I 
Sbjct: 759 ERHLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHPVKEEDTGLALRFSLADTGIGIS 818

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCR 787
            ++  S+FN F   A     Q  G GLGL+I    + + GG + + S     +       
Sbjct: 819 PEVLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQMMGGVLDVKSEPGRGSEFFFTVS 878

Query: 788 IPSKE 792
           +P  E
Sbjct: 879 LPYSE 883


>gi|308067293|ref|YP_003868898.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305856572|gb|ADM68360.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 481

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 12/257 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +  +A+  L E+ + L  A + K+ F+  +S+ELR+PL +II    ++         
Sbjct: 209 QRDELQKAKVILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQIINEQGKELDE 268

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  QY + I AS   LL L+NDILDL+ V+AG M++    + + ++   +         
Sbjct: 269 DELDQYSDLIYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQVMMMHFEVTAK 328

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------R 714
           + N+   +     +     +D +R+ QI   +LSNA  F+ +G  ++L+ +        +
Sbjct: 329 DKNLEFSLKEHEPIPNEIRSDSKRVQQILRNLLSNAFKFTHEG-RILLEISTQHLNQKGQ 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
           +    +F+VK+ G  I +     +F  F         +  G GLGLSI   F  L GG +
Sbjct: 388 EGDWVVFAVKDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGFI 447

Query: 773 SISSSDEGVTTINCRIP 789
            + S +   +T +  +P
Sbjct: 448 RLESEEGKGSTFSLYLP 464


>gi|291571152|dbj|BAI93424.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 917

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 120/251 (47%), Gaps = 16/251 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ---SQYV 610
            L +  E    A++ K+ F+ H+S+ELR+PL  I+GFT L+        N        ++
Sbjct: 429 ELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQISLENNHNLNNFRDHL 488

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+ND+LD++ ++AG + LN +   L  LL+ +++  + +     +++ 
Sbjct: 489 YIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLEEMFSIRAASEGLKLI 548

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------- 718
            +    L  ++ +D Q+L Q+   ++ NA+ F+  GS  +     D  +           
Sbjct: 549 FVRSPNLPRYINSDEQKLRQVLINLIGNAVKFTENGSVTLHSQVIDPPNQIDNPQPPPMV 608

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSS 777
             F+V++ G  I       +F  F+      +  +G GLGL I + F+ L GG +S+SS+
Sbjct: 609 LQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQQGTGLGLPISQQFVQLMGGDISVSST 668

Query: 778 DEGVTTINCRI 788
               +    +I
Sbjct: 669 LGVGSVFKFKI 679


>gi|160943149|ref|ZP_02090386.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445618|gb|EDP22621.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii
           M21/2]
          Length = 752

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 141/296 (47%), Gaps = 15/296 (5%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             A+I  +   R+  Q  L+    + L            +       +  RA+ A  E  
Sbjct: 308 IMAVIAGWFLLREKQQRELQAEKKTNLRL------EQYNVQLTQANDEMRRAQDAAAEAL 361

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           ++  +A + K  F+ ++S+++R+P+  IIG T L+K         K ++++  + +S  +
Sbjct: 362 QSAERASKAKTDFLSNMSHDIRTPMNAIIGITALMKNELHEP--EKLAEHLGKLESSGQL 419

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++N+ILD++ +++G   L+   + L   ++++   I  +  + +    V ++ +  +
Sbjct: 420 LLGIINNILDMSRIESGKTTLHVEKMNLPQQISQLDSIIRQQAGQRSQSFTVSTNLQHEN 479

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDM 734
            +AD  RL Q+   ILSNA+ ++  G  + L+            + F V+++G  +  D 
Sbjct: 480 VLADPNRLNQVLMNILSNAVKYTPTGGHIRLEVEELPRNEHYARYRFVVQDDGIGMSADY 539

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            K++F+ F      G  +  G GLG++I +S I+L GG +S+ S+    T     +
Sbjct: 540 QKTLFDPFTREERSGTNKVQGTGLGMAITKSVIDLMGGSISVESATGKGTRFEVVL 595


>gi|70725019|ref|YP_251933.1| signal transduction two-component sensor histidine kinase, VicK
           [Staphylococcus haemolyticus JCSC1435]
 gi|123762363|sp|Q4LAJ8|WALK_STAHJ RecName: Full=Sensor protein kinase walK
 gi|68445743|dbj|BAE03327.1| signal transduction two-component sensor histidine kinase, VicK
           [Staphylococcus haemolyticus JCSC1435]
          Length = 608

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 151/399 (37%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 225 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRV 284

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  L     +  +         +    D       SF  +    +G
Sbjct: 285 RIVNDMAIKMLGMSKEDLIGYYMLSVL------NLEDEFSLDEIQENNDSFLLDINEDEG 338

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++     +S I             + D    ++            +  +  FV +V
Sbjct: 339 IIARVN-----FSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 382

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+       N     ++      +  ++ LVND+L L+ +D  
Sbjct: 383 SHELRTPLTSMNSYIEALEEGVWKDDN-LAPSFLSVTREETERMIRLVNDLLQLSKMDNE 441

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 442 SEQITKEIVDFNMFINKIINRHEMAA--KDTTFVREIPSETIFTEIDPDKMTQVFDNVIT 499

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 500 NAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 559

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 560 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 598



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 21/164 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +    L        +
Sbjct: 252 EAQANTESEKRRLDSVITHMSDGIIATDRRGRVRIVNDMAIKMLGMSKEDL--------I 303

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L ++ +    +EN  S        +      N  T+ V  T     G I +
Sbjct: 304 GYYMLSVLNLEDEFSLDEIQENNDSFLLDINEDEGIIARVNFSTI-VQETGF-VTGYIAV 361

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEGVA 448
             ++T Q  +E +               +      I+ L EGV 
Sbjct: 362 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEGVW 405


>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1152

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 165/405 (40%), Gaps = 46/405 (11%)

Query: 419 LTVQVDLETKY---NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           +  + DLE +        +      D++ +       DG I   +P+   + +     + 
Sbjct: 340 IKSRKDLEAELAKRKEAEEKYRTIFDNIQDVYFETSLDGAILEISPSISRVSEYGRTDIL 399

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFD--DERKSLQGTLELLSDSVLEYSIIPL 533
                    A      ++    D    IIT  +  D    LQ       D  L   ++  
Sbjct: 400 GR-------AVGDFRMSKEAMADFLRRIITQGEVRDFEVRLQNRNGAFKDFSLNSRLVLK 452

Query: 534 PNA---QTMLTFVNVTDSVRAERALTEKNEALRKADE---------------------IK 569
            N    + +    +VT+  +A++ L    E L +A+                       K
Sbjct: 453 ENGAPDKIVGVMRDVTERRQAQQELLAAKERLEEANAQLEASIKQAEQLANEAFVANNAK 512

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+P+  IIG   LL  +    L+ +Q+ +V+ +  S+  L+ ++NDILD
Sbjct: 513 SQFLANMSHEIRTPMNGIIGMAALLLDT---PLDGQQTVFVQTVRKSAHALVTIINDILD 569

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
            + V+AG ++L  +   L   L  +   +A K HE  +    I    +  + + D  RL 
Sbjct: 570 FSKVEAGKLELEEAPFSLQAELEAMGDVLAVKAHEKGLEYACIMHPDVPDALIGDSIRLR 629

Query: 689 QIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+   I+ NA+ F+  G     + + A  D     +FS+K+ G+ +PED  ++VF  F  
Sbjct: 630 QVLVNIVGNAVKFTDAGEVSLEISMAAMDDARCTLLFSIKDTGAGLPEDKIETVFEAFAQ 689

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 R   G GLGL+I +S + L GG +   + +         
Sbjct: 690 ADSSVTRKFGGTGLGLAISQSLVRLMGGEIIAENREARGAHFRFT 734


>gi|315127664|ref|YP_004069667.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas sp. SM9913]
 gi|315016178|gb|ADT69516.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas sp. SM9913]
          Length = 1256

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 90/390 (23%), Positives = 169/390 (43%), Gaps = 29/390 (7%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           GT+ +  ++T Q            +    I+  + GV +   +  I   N A R L+   
Sbjct: 512 GTMGVGRDITEQQHTLYALKESESIFRSAIEFAANGVFLLSLEYAILQINKAARKLFSKH 571

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL---ELLSDSVLE 527
           +       +           +N +   +L A +    +++++    TL   +L +   L 
Sbjct: 572 DKLTDTPFY---------ALFNNTQWQELEALLQQLLNNKKRVFHLTLAHTQLNAWLQLS 622

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S+I   N+Q +   +++ D       LT+  +   +A   K+ F+ ++S+E+R+PL  +
Sbjct: 623 MSLIWNENSQPLYYVIHIQDVT----ELTKAKDDAERATLAKSRFIANLSHEIRTPLNAV 678

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  D+L       L  +Q Q       ++  LL ++N +LD A V++    L  + + L
Sbjct: 679 LGLLDMLAEH---GLTQRQIQQTSQAKYAANNLLQMLNSMLDFARVESKEATLQLAPLCL 735

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            DL++  +  I        I++K+  D ++    V D  RL Q+   +L+NA+ F++KGS
Sbjct: 736 VDLIDTCESLILPLCQAKQIQLKIDIDSQISPFLVGDTIRLQQVLGNLLTNAVKFTNKGS 795

Query: 707 TVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
            V LK               F V + G  I +   + +F+ F        R  +GVGLGL
Sbjct: 796 -VTLKMTLQPSQSHIEQRICFQVIDTGVGIAQADQRRLFDAFTQGDESSTRLHQGVGLGL 854

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +IV+  + L GG +++SS           +
Sbjct: 855 AIVKHSVALMGGEIALSSDKGHGCHFYFTL 884


>gi|309792184|ref|ZP_07686656.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225725|gb|EFO79481.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 887

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 111/671 (16%), Positives = 230/671 (34%), Gaps = 67/671 (9%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN- 225
           R L ++    ++ +       L       ++  +     +   D+    L A+  Y ++ 
Sbjct: 231 RPLIVNDHAHDITKHKQTEIALMESEQRLRLFVEHAPAAIAMFDRTMVYLLASRRYLEDY 290

Query: 226 ----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-TLEHGNNKSYKIV 280
                   G        E    ++E  ++ +  +    +      S          +++ 
Sbjct: 291 QLKDCAIIGRSHYDVFPEIPDYWREIHQRCLQGAVEKNEGEPFPRSDGRVDWVR--WELH 348

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----------LTVAIAIFDQNRYLQF 330
              +  GE G  +  S+ IT   +    ++              L   I   D    +  
Sbjct: 349 PWRDLQGEIGGLVLFSEVITQRVEALQAFKASEQRYRQMFEMHGLPKLIIALDT-GQIIN 407

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N +    +   +  L       ++L         PE+++    +    ++Y     H+ 
Sbjct: 408 ANPAAGRFYGYTVEQL-------KMLNIADLTFLTPEEVHQHIQQTINANMYSVECLHR- 459

Query: 391 TWHLPNGQTLHV-----IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ--------- 436
                +G   HV     ++    R     +  ++T +            +          
Sbjct: 460 ---GADGYPRHVEMFLGLLEFEGRQELYVLITDVTERQRTRKALQEAYDLMEQRVIARTI 516

Query: 437 ---------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                     +  ++   G      +G     N             +    +I  + +  
Sbjct: 517 ELQRYAAQVQDLYNNAPAGYHSLDTNGVFVQINDTELRWLGYTREEVLGKKYILELISPA 576

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI--IPLPNAQTMLTF--- 542
           +R+  E +                K+L+  L     S+    I    + + Q        
Sbjct: 577 TRHVFERNFPIFKQQ------GWIKNLEFELVRKDGSIFPVLIDATAIFDDQGRFVHSRS 630

Query: 543 --VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T+  +A+ AL    +   +  E+K+ FV   S+E R+PL  I+  T+ L   +  
Sbjct: 631 TLYDMTERKQADDALRLAWQKEHELSELKSRFVSMASHEFRTPLAAILATTETLTIYRDR 690

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              ++    ++ I      +  ++ D+L LA + AG M+       L+ L  E+ +   T
Sbjct: 691 MNEAQIDARLDKIRQQVMHMKEIMEDVLQLARIQAGRMEFRPLIEDLDALCREIVEEYET 750

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           ++ +   RI      +      D + + QI S ++SNA+ +S+  S+V +   R+    I
Sbjct: 751 QVRQPG-RIAYSCPQRPVLAEIDPRLMRQIISNLISNALKYSAPQSSVCITLQREVQRVI 809

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +V + G  IP +  K +F+ F    + G   G GLGLSI    I+LH G + I+S  + 
Sbjct: 810 LTVTDQGIGIPPNDLKRLFDPFHRATNVGTIAGTGLGLSIAHQAIDLHHGTIHIASEVDQ 869

Query: 781 VTTINCRIPSK 791
            TT+   IP +
Sbjct: 870 GTTMTVTIPLQ 880



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 98/273 (35%), Gaps = 19/273 (6%)

Query: 305 LTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           + H   IL  +  A   F   +R + F + +F  +    L     +P+      F+R  +
Sbjct: 128 MLHVQAILDTMLDAFTSFSLTDRRILFSSAAFERVLGYSLQCFVDDPNF-----FMRVVH 182

Query: 364 KLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTIWM--- 415
             P+ L+   T ++   +       H+    LPNG    ++  S    + +G  + +   
Sbjct: 183 --PDDLDLAITMRQKALTDGHIEFEHR--MLLPNGAVRWILRRSWVIFDDQGRPLIVNDH 238

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T     E       +     ++H    +A+F       L++  +   ++ ++  + 
Sbjct: 239 AHDITKHKQTEIALMESEQRLRLFVEHAPAAIAMFDRTMVYLLASRRYLEDYQLKDCAII 298

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             +H  ++      Y+ E     L  A+  +  +      G ++ +   +  +  +    
Sbjct: 299 GRSHY-DVFPEIPDYWREIHQRCLQGAVEKNEGEPFPRSDGRVDWVRWELHPWRDLQGEI 357

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              +L    +T  V A +A     +  R+  E+
Sbjct: 358 GGLVLFSEVITQRVEALQAFKASEQRYRQMFEM 390


>gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
 gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
          Length = 1032

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 414 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 458

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 459 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 517

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 518 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 577

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 578 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 634

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 635 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 694

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 695 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 754

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 755 GGSIEIDSLPDFGTTVTVALPLRE 778


>gi|153824379|ref|ZP_01977046.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2]
 gi|149741933|gb|EDM55962.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2]
          Length = 857

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 158/383 (41%), Gaps = 34/383 (8%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +               
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--------------- 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
           I+ +      ++            IT+          T E+    V  +++ P+    Q 
Sbjct: 388 IQFLREDAQNHFLFEILERQLLPTITNAAQGNNPSDVTTEV-DGRVYRWNLSPIMVEGQI 446

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK
Sbjct: 447 ISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLK 506

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + 
Sbjct: 507 RT---PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAID 563

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++   
Sbjct: 564 RIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQL 622

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             GD     +  V + G  I E     +F  F+       R   G GLGL+IV S + + 
Sbjct: 623 IEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEML 682

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G + +SS     T    ++P +
Sbjct: 683 SGQLHVSSEYGIGTRFEIQLPIE 705


>gi|289670369|ref|ZP_06491444.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1057

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 141/312 (45%), Gaps = 4/312 (1%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLT 541
           +  T  +        +         +++R+SLQ +   L     E     +    +T   
Sbjct: 279 LEETQRQSEELQTQQEELRVANEELEEQRRSLQQSQSDLEVQQAELEQTNVQLEERTQAL 338

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  + A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K G+
Sbjct: 339 EAQRQALLIAQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGT 398

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y + I +S+  LL L+NDILDL+ ++AG ++L   T+    +L  ++++    
Sbjct: 399 LSTEQVKYAQAILSSNNDLLTLINDILDLSKIEAGHVELADETVATTSVLQRLRETFEPL 458

Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +  + +++ +        V D QRL QI   +L+NA+ F+  G   +   A   G   
Sbjct: 459 ARQKGLALEIAAVADAPTQLVVDNQRLQQILKNLLANAIKFTEHGKVSLSVQAHAPGRVR 518

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           F+V + G  I  +  + +F  F       +RR  G GLGLSI        GG +S+ S  
Sbjct: 519 FAVTDTGIGIAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEP 578

Query: 779 EGVTTINCRIPS 790
              +     +P+
Sbjct: 579 GRGSCFTLELPT 590


>gi|261210413|ref|ZP_05924707.1| sensor histidine kinase [Vibrio sp. RC341]
 gi|260840471|gb|EEX67037.1| sensor histidine kinase [Vibrio sp. RC341]
          Length = 1145

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 173/422 (40%), Gaps = 38/422 (9%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE+ L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQNLKIANETLEERVLQRTVELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++ KG  V L   R  G     V +NG  I ED 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPKG-KVTLGVRRVAGQVRIDVWDNGIGIEEDK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI----PS 790
             + +F  F   +     +G+GLGL+I +   ++ G  +S+ S     +  +  +    PS
Sbjct: 949  QQEIFEEFNRGSQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPGQGSVFSLTLERAEPS 1008

Query: 791  KE 792
            ++
Sbjct: 1009 QQ 1010



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQNLKIANETLEE 759


>gi|330806709|ref|YP_004351171.1| alginate biosynthesis sensor protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374817|gb|AEA66167.1| Putative alginate biosynthesis sensor protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 596

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 21/357 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G+++  NP  +     +E RL  G               
Sbjct: 258 QQRLQAVLDSIDDGLLMIDRQGQLEHLNPVAQRQLGWDEERLGQG---------LGEALG 308

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER     ++E+  +  VL YS+ P+ + Q  +    +      
Sbjct: 309 RLELDEELHLVLRGGSLERAPEDLSIEVDGESRVLTYSLTPVSHTQGHILGAVMVLHDVT 368

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     S  S+++  + 
Sbjct: 369 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFSEESREADLLN 419

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +++LL   +   A +     I + V
Sbjct: 420 TVTEEMQRLMQLINDLLNFSRYQNGLQKLTLAPCSIDELLEAARLRFAEQAQTKGIELLV 479

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
              G L    AD  +L ++   ++ NAM  +++   + L+A R     I SV++NG  I 
Sbjct: 480 AIQGPLPRLHADAAQLDRVLDNLIDNAMRHTAENGQIRLQARRHGERVIISVEDNGEGIA 539

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +
Sbjct: 540 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMAL 594


>gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
 gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
          Length = 949

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 132/693 (19%), Positives = 254/693 (36%), Gaps = 93/693 (13%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    Q    I+   R S     L+ ++ + + SE    + + +     +  F+ L
Sbjct: 50  QEFNLS-SDQAQRFIQ---RTSDVMKELKYIAENRLTSETGVISSRGRDDKVDVPTFEPL 105

Query: 199 FDSLDFL----VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF-------KEE 247
           F+  D      VW R     + W    ++ N      + +  +     L           
Sbjct: 106 FEDSDCSAMSNVW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGGDNLCMANFGLRDMP 164

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           I++     +  E+      +  +   N  + I            A+           L  
Sbjct: 165 IERDSALEALHERIMKYRNAPQDETGNNLFWIGEGPRPGIGYFYALTPVYLANRLQALLG 224

Query: 308 TYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
             + +         +L + + I D+N        + + L   D                +
Sbjct: 225 VEQTIRMENFFTPGSLPMGVTILDENG------HTLISLTGPD--------------NKI 264

Query: 360 RSANKLPEQLNW----KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT--------SN 407
           ++  +  ++ +W      ++E +   +    +    + +P  Q L  I          + 
Sbjct: 265 KAEPRWMQERSWFGYTSGFRELVLKKHLPPSSLSIVYSVPVDQVLEHIRILILNAILLNV 324

Query: 408 PRGGTIWMFENLTVQV------DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSN 460
             G  ++    +  +           +     +   + +     G+ +    DG   LSN
Sbjct: 325 LVGAALFTLARMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN 384

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                L  T  N L+     R     C +  N       F  ++TS +    +LQ +   
Sbjct: 385 ----ELAHTYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSNN---TNLQISFVH 430

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                   +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+EL
Sbjct: 431 SRYRNENVAI---------CVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHEL 481

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+
Sbjct: 482 RTPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKI 538

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
                   +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+
Sbjct: 539 EPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAI 598

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
            F+  G  +IL  ARD       V++ G  IP      +F+ F  V    +   +G GLG
Sbjct: 599 KFTDIG-CIILHLARDGDYLSIRVRDTGVGIPAKEVVRLFDPFFLVGTGVQRNFQGTGLG 657

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I E  IN+  G +S+ S     +    RIP 
Sbjct: 658 LAICEKLINMMDGDISVDSEPGMGSQFTIRIPL 690


>gi|189424182|ref|YP_001951359.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189420441|gb|ACD94839.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 770

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 15/293 (5%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEA 561
           + S   E   L      +S ++ E           +    +  + + AER   LT   E 
Sbjct: 250 VLSPKSEIGRLTAEFNRMSRAIKE-------REDELKRHRDHLEELVAERTAELTIAKEQ 302

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A+  K+ F+  +S+ELR+PL  I+G+  +L+     +L+  Q Q ++ +  S   LL
Sbjct: 303 AESANRAKSDFLSSMSHELRTPLNAILGYAQILRLH--NNLSDIQRQQLDIMRNSGEHLL 360

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+NDILD+  ++A  M +  +   L  L+ +V      +  E  ++     +  L ++V
Sbjct: 361 TLINDILDVGKIEANKMDVEDAVFDLPALIAQVFNLTKLQAEEKELQFHYEPETPLPAYV 420

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDF-IFSVKNNGSSIPEDMCKSV 738
             D ++L QI   +LSNA+ ++ +GS    +   R         V + G  IP D    +
Sbjct: 421 HGDERKLRQILLNLLSNAVKYTRRGSVTMRVSYGRAGDGLFRCEVADTGIGIPADKLGVI 480

Query: 739 FNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  F    +  Q R G GLGL+I +  + L  G + + S     +T    +P 
Sbjct: 481 FEPFTQLTNDRQGREGTGLGLNITKRLLTLIQGTMGVESIPGKGSTFWLEVPL 533


>gi|254241747|ref|ZP_04935069.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192]
 gi|126195125|gb|EAZ59188.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192]
          Length = 741

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRN 482
             E   +  + ++   +D +   V++   DGR+   N  +  SL  T E          +
Sbjct: 102 RTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDSD 161

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                           +      SF D    + G L  +   V  Y          M  +
Sbjct: 162 WVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQGRVLGLMNGW 221

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+      + 
Sbjct: 222 IDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRL--AP 279

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++   +E    ++  L  L+ DILD+A +++G + L    + L  ++  V++      
Sbjct: 280 EQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGD 718
            +  +R+ +  D   G   + D  R  Q+ S ++SNA+ F+ +G  V ++      D G 
Sbjct: 340 RQKGLRLVLELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERSLDEGR 398

Query: 719 FIFSV--KNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
            I  V  +++G  I       +F  F+  A     + G GLGL+I    ++L GG V + 
Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 776 SSDEGVTTINCRI 788
           S     T ++  +
Sbjct: 459 SEPGKGTRVSLDL 471



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +   L         LS  +++ + L D + + V  R   G +L  N +Y ++        
Sbjct: 93  LQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQA 152

Query: 234 QKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNK---SYKIVRVLNSFG 287
           +  +       +    + M     + A       T   +  G       + +    +  G
Sbjct: 153 RGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQG 212

Query: 288 EAGIA----IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                    ID+++   +  QL            A ++F
Sbjct: 213 RVLGLMNGWIDITERERLARQLREAMRQADEANRAKSVF 251


>gi|329725822|gb|EGG62301.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21172]
          Length = 608

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 152/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+ +      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDVIIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 286 RIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 343

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 344 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++           +         K      D  ++ Q+F  +++
Sbjct: 443 SDQINKEIIDFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 599


>gi|297156766|gb|ADI06478.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1814

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1295 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1354

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  G+L+ KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 1355 NADGNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALIQLVDYVEA 1414

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---- 711
            +      E  +   V    +L  +   D QRLLQ+   +LSNA+ F+  G+  ++     
Sbjct: 1415 TFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAG 1474

Query: 712  -----------------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
                                D     FSV + G  I     + +F  F         +  
Sbjct: 1475 ADVPDGIREQLLEHGALRDPDAEMIAFSVTDTGIGIASSKMRVIFEAFKQADGTTSRKYG 1534

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +  +S     +T    +P 
Sbjct: 1535 GTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPL 1572


>gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074]
 gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1827

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 157/367 (42%), Gaps = 36/367 (9%)

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            G I+L+  AF+     + + LS    +  + AT     + +   +          ++ + 
Sbjct: 1244 GVIELA--AFQQFTHIQRDFLSQ---LAEMIATSVNTISVNTKTEELLKQSQELTEQLRD 1298

Query: 514  LQGTLELLSDSVLEYSIIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                LE+   + L+ S   L +       Q     V  T+   A + L E+ E L  +  
Sbjct: 1299 RSEELEVRQKA-LQASNAELEDKAELLARQNRDIEVKNTEIEDARQVLEERAEQLAVSMR 1357

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ E I  + + LL L+NDI
Sbjct: 1358 YKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSDLLQLINDI 1417

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
            LDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  +   D QR
Sbjct: 1418 LDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQR 1477

Query: 687  LLQIFSKILSNAMDFSSKGSTVILK---------------------AARDNGDFIFSVKN 725
            LLQ+   +LSNA+ F+  G+  ++                      A  D     FSV +
Sbjct: 1478 LLQVLRNLLSNAVKFTDSGAVELVIRPAAADVPDAIREQLLEAGSLADADADLIAFSVTD 1537

Query: 726  NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  I     + +F  F         +  G GLGLSI      L GG +  +S     +T
Sbjct: 1538 TGIGIASGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGST 1597

Query: 784  INCRIPS 790
                +P 
Sbjct: 1598 FTLYLPL 1604


>gi|52144326|ref|YP_082503.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977795|gb|AAU19345.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 896

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDN------G 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS       +      D+       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WMTISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2]
 gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2]
          Length = 925

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 19/291 (6%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE---------RALTEKNEAL 562
           + ++G  ELL   +   +   +     M   ++   S   E           L    +  
Sbjct: 223 EPMRGEFELLRQGLNSIAHNMMLQKDEMQKHIDQAISDYRETLEQYETQNIQLNIAKKEA 282

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+ +K+ F+  +S+ELR+PL  ++GFT  L  +    LN  Q  Y++ I  S+  LL 
Sbjct: 283 QDANRVKSDFLAKMSHELRTPLNGVVGFTRQLYKT---PLNKHQKDYLDTIELSANSLLA 339

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFV 681
           ++NDILD + ++AG M+L      L D +NEV   +A   H+ N+ + + I D    S +
Sbjct: 340 IINDILDFSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAHDKNLELSINIHDNVPDSLI 399

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR---DNGDFIFSVKNNGSSIPEDMCKS 737
            D  R  QI   ++SNA+ F+  G   + +              ++ ++G  I  +   +
Sbjct: 400 GDPTRFKQILINLISNAIKFTESGHVLIDVDCRHYANQRTSIFVAINDSGIGISANKQDA 459

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           +F+ F        R   G GLGL I +  +   GGH+S++S+    +    
Sbjct: 460 LFSAFGQADSSITRKFGGTGLGLIITKHLVEAMGGHISLNSAVGKGSCFTF 510


>gi|325262268|ref|ZP_08129006.1| PAS domain protein [Clostridium sp. D5]
 gi|324033722|gb|EGB94999.1| PAS domain protein [Clostridium sp. D5]
          Length = 1001

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/684 (14%), Positives = 240/684 (35%), Gaps = 82/684 (11%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV--WHRDQAG--DILWANISYKKNT 226
           ++ +Y ++  +    ++      +   ++D++   +  + +   G   ++  N +     
Sbjct: 178 VNSLYLDITRSEEDAQRHREQTELLTSIYDTVPCGIIRFIKSSNGSYRLISLNRAVVSLM 237

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRM--------ISSSALEKNFCETVSTLEHGNNKSYK 278
             + I       +   L       R         + +    ++    V   + G+    +
Sbjct: 238 GYDSIEEGMGDWKEGMLGAVVEADRQYLYNTYYQLENIGDRQDSEFRVMW-KDGSIHWME 296

Query: 279 ---IVRVLNSFGE---AGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIF----DQNR 326
              +V      GE       +D++    +  QL    E+        A  +F    D + 
Sbjct: 297 GTSMVVGTTPEGEKILQRTVVDITPRKVLQQQLDREQEMYRVAMEASAAVMFEYHMDTDT 356

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS--ANKLPEQLNWKTWKENIF----S 380
           ++ +                      +E+ ++ ++    +L    +     +NI      
Sbjct: 357 FISY------------EPITGEGVLRNEIKDYSQALLKQQLVHPDDIPGVIDNICNGRTE 404

Query: 381 VYK------SSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           V++       +      W+  NG+ +      +   G ++    +  ++   +++  + +
Sbjct: 405 VFEVRCSTPRTGPGNFIWYRVNGRLVMEEGKPSRVVGALYNIHKMKSELSENSEHLYMNQ 464

Query: 435 VQGETIDHLSEGVAVFGPD---------------GRIKLSNPAFRSLWKTEENRLSPGTH 479
              + I+ +   +     +               G +  S P    L       ++    
Sbjct: 465 SALQAINGVYVSIFYVDLEADSYYAVRLPEAGSSGSLARSGPYSSQLCSYILRDVNL-AD 523

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL----LSDSVLEYSIIPLPN 535
            + ++  C +     +       I   F   +  L   +E+     ++   + +II   N
Sbjct: 524 WKKVSEVCKKEELLRELNADNRHIEVEFRQRQSELWLRMEVHLREANEGRPDTAIIAFRN 583

Query: 536 --AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              +         +  RA+ AL E   +L  A+  K+ F+  +S+++R+P+  I+G   +
Sbjct: 584 ISVEKQKELEYYEEEKRAKHALEEAYASLNTANSAKSDFLSKMSHDIRTPMNAIMGMAAI 643

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            K +       K    ++ I  S   LL L+N +LD++ +++G + L+     + D+L E
Sbjct: 644 AKNNLGN--EEKIEDCLDKIDISGGHLLELINKVLDMSKIESGNITLSEEKFRIEDVLEE 701

Query: 654 VKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V   I     +  +  + I    +      D  R+ QI   +LSNA+ ++++   + +  
Sbjct: 702 VSLIIQPDADKKRLNYRTIVKKPEHSWVHGDAVRVKQILLNLLSNAVKYTNESGYINVYL 761

Query: 713 ARD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESF 764
                     G +   V+++G  + E+ C  +F  F         + +G GLGL+I  + 
Sbjct: 762 EEKLTGENGVGCYEIIVEDDGIGMTEEFCSKMFLPFERAEDSRVSEIQGTGLGLAITSNL 821

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           + +  G + + S     T     I
Sbjct: 822 VQMMNGTIQVESELNKGTRFIVTI 845


>gi|221134530|ref|ZP_03560835.1| sensory transduction histidine kinase [Glaciecola sp. HTCC2999]
          Length = 613

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 162/400 (40%), Gaps = 34/400 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +  ++T Q     +   L +     ++  + G   +  + +I   + +  S++    
Sbjct: 82  RYGIIRDITKQHHQNVESEFLKQRIALALNTSATGTWDYHVENQILYWDDSMLSIFDLSP 141

Query: 472 NR-LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLS--DSVL 526
            + +S   H  ++        + SD  D   A         E  ++  T   LS    + 
Sbjct: 142 QQKVSRFEHWIDLI-------HPSDRNDFITAFNRGSRGLAENNAILITCRTLSPLGRIS 194

Query: 527 EYSIIPL-------PNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSF 572
              I           N + + T ++ T+S  +++ +  +    ++           +  F
Sbjct: 195 YVRINAKFYMDENKRNLRILGTCIDTTESEISQKEIVNQATKAQENMIIAQDASASRTRF 254

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  I+G   +L++     L++     V     SS  LL ++NDILDL+ 
Sbjct: 255 LANMSHEIRTPMNAIMGALQILESY---DLDTGSLNLVNMAIDSSDHLLKIINDILDLSK 311

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIF 691
           +DA  M +    I L  LL          + + +I I +    +     V D  R  QI 
Sbjct: 312 IDAHQMAIESIGINLQQLLTSAIDKFMLSL-DKDIEINLTIPPEFNPYRVGDPVRFNQII 370

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
           + ++SNA+ F+ KGS V +    ++     SVK+ G  IP+   +++F+ F         
Sbjct: 371 NNLISNAIKFTEKGS-VDICLLGNDESIELSVKDTGIGIPKHQLQNIFSPFKQADDSITR 429

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              G GLGL+I  S   L  G + ++S +   T    + P
Sbjct: 430 SYGGTGLGLAICTSLTELMSGKLKVTSEEGVGTEFTFQAP 469


>gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9]
          Length = 923

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 305 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 349

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 350 -ARTSGEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 408

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 409 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 468

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 469 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 525

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 526 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 585

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 586 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 645

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 646 GGSIEIDSLPDFGTTVTVALPLRE 669


>gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
 gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
          Length = 1205

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 157/383 (40%), Gaps = 28/383 (7%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +++  Q+  E       +   + I H+S+          +              E   + 
Sbjct: 339 QDIAEQI--EGTIKESQQRLADLIPHISDA----TQQKTLGKIKGQLTQYLALFEQLFTQ 392

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL----QGTLELLSDSVLEYSIIP 532
              I   ++     Y ++     F  I   F+ ++  +    Q +  L    ++  S I 
Sbjct: 393 KQAIAQQSSALDNAYLKA-----FKVIEPDFEHQQNIVENSSQISFYLAIGGIIFMSTIV 447

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +L   +     ++   L    +    A++ K+ F+ ++S+E+R+P+  IIG + 
Sbjct: 448 FI---VLLANKSHAALEKSADKLAIARDEADYANQAKSDFLANMSHEIRTPMNAIIGMSY 504

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L   +    L   Q  Y++ +  S+  LL L+NDILD + ++AG + + +    L ++L+
Sbjct: 505 LALKT---DLTKAQRNYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEHVDFRLENVLD 561

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
            +   +  K  E  + + + +   + +    D  RL QI + + +NA+ F+ +G   + +
Sbjct: 562 NISNLVGLKASEQGLELLIHTSKDVPTALYGDPLRLGQILTNLANNAVKFTEQGEVKITI 621

Query: 711 KA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
            A     D+    F+V + G  +  +  + +FN+F        R   G GLGL+I +   
Sbjct: 622 TADNLENDDVTLRFAVSDTGIGMTPEQTQKLFNKFTQADSSTTRKYGGTGLGLAISKELC 681

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
            L GG + + S     +T    I
Sbjct: 682 LLMGGDIEVRSQFGEGSTFEFTI 704


>gi|150015425|ref|YP_001307679.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149901890|gb|ABR32723.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 357

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 7/315 (2%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSIIPLPNAQ 537
           HI  I  + +       GW  F  +   F ++ K        +LS +V   + I   +  
Sbjct: 42  HIIFIVQSLTSAVIYFLGWKAFIYMHWRFANKHKKFDLSHFPILSGAVEAMNKIASGDFN 101

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++    +         +    + L   ++++  F+  VS+E++SPLT+I GF  LLK  
Sbjct: 102 VLVKTNELDPFNEVADNVNRMAKELGSLEKLRQDFISDVSHEIQSPLTSISGFATLLKKG 161

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            L     + S Y   I   S  L  L  ++L L+ +++    LN     +N  +  V   
Sbjct: 162 SLDK--DQISHYASIIETESKRLSKLSENLLRLSNLESEDNNLNLKKYEINKQIESVLLM 219

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  +    NI + +  +  +     D   L Q+F  +L+NA+ F+ +   + +    +  
Sbjct: 220 LEPQWSAKNITLDISLEETI--ICGDEDLLSQVFINLLNNAIKFTPENGNIGVNLYNNED 277

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
                V + G  I  +    +F RF        R   G GLGLSIV+  I+LHGG +S++
Sbjct: 278 GVECKVSDTGIGISSEDQPRIFERFYKADKARNRSLGGNGLGLSIVKKIIDLHGGKISLT 337

Query: 776 SSDEGVTTINCRIPS 790
           S     T     +P 
Sbjct: 338 SEIGKGTEFIIWLPK 352


>gi|207739510|ref|YP_002257903.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
 gi|206592889|emb|CAQ59795.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
          Length = 675

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 153/376 (40%), Gaps = 20/376 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---SNPAF----RSLWKTEENRLSPGTH 479
           T+     +     +      ++++  D  +      NP F      L       +     
Sbjct: 152 TQQRVSQQRLLAALQASP--ISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRA 209

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +     R         +  A       +R      +  L D   E  II L NA   
Sbjct: 210 ASRLTEAGQRVIATGSPTRVEFAFRRRHT-QRVVYDVVVMPLRDDTGE--IIGLTNAAID 266

Query: 540 LTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +T    T++ R +   A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL   
Sbjct: 267 ITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR 326

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 +   + +E I  S+   ++L++D+LD++ + +G + L    + L D+L   +++
Sbjct: 327 PYD--EAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARET 384

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I     +  I I       +     D  RL Q+F  +L+NA+ F+ +G  + +       
Sbjct: 385 IEPMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPE 443

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH G ++ +
Sbjct: 444 GLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAA 503

Query: 776 SSD-EGVTTINCRIPS 790
           S+     TT+   +P 
Sbjct: 504 SNGANLGTTMAVTLPL 519


>gi|199597242|ref|ZP_03210673.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
 gi|199591758|gb|EDY99833.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
          Length = 555

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 153/371 (41%), Gaps = 28/371 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q  L  K           ID+L  GV +   +  + L N A   L              
Sbjct: 203 EQTHLREKVAVRQSSFDRLIDNLPLGVMLIDTNKDVILHNHAMSQLLGH----------- 251

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I      Y ++   + L   I  +F  E+   Q    L +   ++ S+IPL    + L
Sbjct: 252 -QIPQPRHNYLDDVKTYALARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRL 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +           +      LR+ ++++  FV +VS+EL++P+T I GF + L +    
Sbjct: 311 QVL----------VILYDVTYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKN 360

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +   ++++ I   S  L  L+NDIL L+  ++       + + L  L+++  +++A 
Sbjct: 361 D-PATLDKFLKIIFDESKRLTQLINDILTLSRPESNQTV--QAQVPLKKLVDDALRNLAK 417

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +  IR++V     L   V D ++L QI   +L+NA+ ++     V + A    G   
Sbjct: 418 VIKDKQIRVEVAIAPDL-QVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLS 476

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  IPE     +F RF            G GLGL+IV   +    G V++SS  
Sbjct: 477 LAVADTGIGIPETEQARIFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQV 536

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 537 GVGSTFTVTLP 547


>gi|91227910|ref|ZP_01262049.1| sensor protein TorS [Vibrio alginolyticus 12G01]
 gi|91188319|gb|EAS74616.1| sensor protein TorS [Vibrio alginolyticus 12G01]
          Length = 987

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 116/238 (48%), Gaps = 7/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S  
Sbjct: 460 RKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDS---GLNPIQKRYAEIINRSGK 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD + ++AG +++ +    L+ ++ +  Q + ++  E  +      +  + 
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVS 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
            +   D  R+ Q+ + ++ NA+ F+ +G   + +     D    +F V + G  I +   
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQ 636

Query: 736 KSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +++F+ F        Q  G GLGL+I +  I   GG + + S +   +     IP +E
Sbjct: 637 RTLFDAFTQAEGGMSQTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIPLEE 694


>gi|163802963|ref|ZP_02196850.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
 gi|159173253|gb|EDP58081.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
          Length = 931

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 122/243 (50%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  +K+ F+ ++S+ELR+PL  +IGFT  +LKT    S    Q  Y++ 
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQMSNS----QMDYLQT 331

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LLN++NDILD + ++AG + L        + L EV    AT  HE ++ I + 
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKSLEITLK 391

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D K+    V D  R+ QI + ++ N++ F+ +G+  + ++    +GD     F V++ G
Sbjct: 392 IDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         +  G GLGL I +  ++  GG +S++S     +T  
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 786 CRI 788
             +
Sbjct: 512 FTL 514


>gi|160941292|ref|ZP_02088629.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435853|gb|EDP13620.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
           BAA-613]
          Length = 805

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 154/406 (37%), Gaps = 32/406 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + +F ++  ++ LE + N  +           + +                R   K  + 
Sbjct: 236 VLVFRDVQDELLLEQERNVEISQLATAAKAAYQMLIAVNLTQNTYHMVEYQRFPVKAPDP 295

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT----------SFDDERKSLQGTLELLS 522
                  I          Y E          +T          S D       G     S
Sbjct: 296 EGRFDELIEFEMEAVHPDYREEFRSKFTRKALTEAFQRGECILSMDVPHIGEDGIYHWNS 355

Query: 523 DSV-----------LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
             V           +E ++    + +  +    +    +A+  L +  +   KA++ K+ 
Sbjct: 356 TQVVKVESPYTHDLIEITLSRNIDEERRVQQETLEKERQAKLLLEDALKKAEKANKAKSD 415

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+++R+P+  IIG T+L +         KQ  Y+  I++S   LL L+N+ILD++
Sbjct: 416 FLSRMSHDIRTPMNAIIGMTELAQLHIGD--EEKQRDYLNKIASSGAHLLGLINEILDVS 473

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQI 690
            +++G+M+L+ S + L  L  E  + +   M  +    +V  D       + D +R+ Q+
Sbjct: 474 KIESGVMELSESPLNLRALAGEAAEMVRISMENSQQEFQVDIDESFDPWVMGDARRIRQV 533

Query: 691 FSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
              IL NA  ++ +   +           +  G + F +++ G  +  +  + +F  F  
Sbjct: 534 LVNILENASKYTGQRGKITFSVCEFKKEEQRTGTYRFIIEDTGIGMKPEYMEHIFEPFSR 593

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  +  G GLG++IV++ I++  G + + S     +     +
Sbjct: 594 ADDSRTSKVPGTGLGMTIVKNLISMMDGDIRVESEYGKGSRFTVTL 639


>gi|77460432|ref|YP_349939.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384435|gb|ABA75948.1| putative two-component sensor kinase and response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 633

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 117/253 (46%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   KA+  K+ F+  +S+ELR+P+  ++G   LL+T+    +  +Q
Sbjct: 242 EQHQAMAQLIQTREEAEKANNAKSDFLAMMSHELRTPMNGVLGMLQLLETT---DMTEEQ 298

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y    S S+  LL ++NDILD + ++   ++L +    L +++    QS      +  
Sbjct: 299 VEYAALASESTEHLLKVINDILDFSRIERSELELEHIPFNLAEVIGACAQSFQHSAAQRG 358

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIF 721
           + +++     L       D  R+ QI   ++ NA+ F+ +G  V ++A   + D+    F
Sbjct: 359 LALQLRIPEDLRDLQVQGDPTRIRQILVNLVGNALKFTEQG-RVSIEAQWQSLDHELLWF 417

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V+++G  I  +  + +FN F         +  G GLGL I  +     GG +   S 
Sbjct: 418 TCAVRDSGIGISPESLELMFNAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQSE 477

Query: 778 DEGVTTINCRIPS 790
           +   +     IP 
Sbjct: 478 EGRGSVFTLEIPL 490


>gi|260596161|ref|YP_003208732.1| aerobic respiration control sensor protein ArcB [Cronobacter
           turicensis z3032]
 gi|260215338|emb|CBA27320.1| Aerobic respiration control sensor protein arcB [Cronobacter
           turicensis z3032]
          Length = 779

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 153/383 (39%), Gaps = 22/383 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +N+  Q+ +E K   + ++Q           +D   + V     D      N A   L  
Sbjct: 130 QNMLEQLKVEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTG 189

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E +L         A   +    E+D       +  +++       G       +  E 
Sbjct: 190 KSEKQLIGLKPHEVYAPEAAEKVLETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEI 244

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             +P  +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIV 302

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G + +L  +    L+++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +   
Sbjct: 303 GLSRILLDT---DLSAEQEKYLKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPVDFT 359

Query: 649 DLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             L +++     +  +  +R  +          + D  RL QI   ++SNA+ F+ +G  
Sbjct: 360 SFLADLENLSGLQAQQKGLRFVMEPVRPVPHKVLTDGTRLRQILWNLISNAVKFTQQGQV 419

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESF 764
            +  +  DN    F V+++G  IP++    +F  +         +   G G+GL++    
Sbjct: 420 TVRVSYNDNEQLRFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRL 479

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
               GG +++SS     +T    
Sbjct: 480 AKSMGGDITVSSKPGQGSTFVLT 502



 Score = 45.7 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R   L+ +  E+ E  +   +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQNMLEQLKVEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYK 278
              G   ++ IG +  +++  E  ++++ +   EK F   VS           G    ++
Sbjct: 189 ---GKSEKQLIGLKPHEVYAPEAAEKVLETD--EKVFRHNVSLTYEQWLDYPDGRKACFE 243

Query: 279 IV------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           I       RV    G  G   D+++     D L  
Sbjct: 244 IRKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|104782773|ref|YP_609271.1| two-component sensor/response regulator protein [Pseudomonas
           entomophila L48]
 gi|95111760|emb|CAK16484.1| putative two-component sensor/response regulator protein
           [Pseudomonas entomophila L48]
          Length = 1210

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 157/386 (40%), Gaps = 15/386 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  +   E   N  ++  G  ++     + V   +GR++  N ++         ++  
Sbjct: 560 RQIKQRQRAERALNDQLEFMGALLNGTPHPMYVRDHEGRLQSCNDSYLQAVGASPEQVIG 619

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPN 535
                     C       D +    A       +R       EL +   +L Y       
Sbjct: 620 KRLEDTPFCDCDYTQQIQDEYQRVMAQGKPLILDRPLRLKDQELTIYHWILPYRNSLGEM 679

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-L 594
              +  ++++++     + L    +    A+  K++F+  +S+E+R+P+  +IG  +L L
Sbjct: 680 QGIIGGWIDISERRNLVQDLRLAKQQADDANRAKSTFLATISHEIRTPMNALIGMLELAL 739

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +  G L+      +E    S+  LL L+ DILD+A +++G + L    + L  L+  V
Sbjct: 740 RRADQGQLD---RPALEIAHHSAQDLLGLIGDILDIARIESGHLTLAPEPVDLAMLVESV 796

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +          + +KV I+D      + D  R  Q+ S ++SNA+ F+ +G  V +   
Sbjct: 797 GRVFDGLARHKGLALKVAITDAAHCHVMLDPLRFKQVLSNLVSNAIKFTEQG-QVRISVK 855

Query: 714 RDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFI 765
             NG+          V+++G  I E+  + +F  F        G R G GLGL I  +  
Sbjct: 856 LRNGNEREAPILDLEVRDSGIGIHEEDVQRLFTPFAQANPYSDGARAGTGLGLVISRNLC 915

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            + GG +S+ S     T +   +P +
Sbjct: 916 TMMGGELSLQSLQGVGTRVRLVMPLR 941



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 11/182 (6%)

Query: 135 RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
           R  G   D          +++ G V G    L ++    +  ++ +     + L++ +  
Sbjct: 520 RDHGVRDDTYWRHYRKIIMQVVG-VIGMLLVLALIWNARLRRQIKQRQRAERALNDQLEF 578

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK----EEIKK 250
              L +     ++ RD  G +   N SY +              E          ++I+ 
Sbjct: 579 MGALLNGTPHPMYVRDHEGRLQSCNDSYLQAVGASPEQVIGKRLEDTPFCDCDYTQQIQD 638

Query: 251 RMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSFGE----AGIAIDVSKEITVNDQ 304
                 A  K               +  + I+   NS GE     G  ID+S+   +   
Sbjct: 639 EYQRVMAQGKPLILDRPLRLKDQELTIYHWILPYRNSLGEMQGIIGGWIDISERRNLVQD 698

Query: 305 LT 306
           L 
Sbjct: 699 LR 700


>gi|320656477|gb|EFX24373.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 918

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRAQSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|319952621|ref|YP_004163888.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM
           14237]
 gi|319421281|gb|ADV48390.1| multi-sensor hybrid histidine kinase [Cellulophaga algicola DSM
           14237]
          Length = 822

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 150/317 (47%), Gaps = 20/317 (6%)

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVN 544
           N+ D      +I+++F+ E  +   T  L    +L+ S      A         + TF+ 
Sbjct: 234 NDLDLSQQLRSIVSAFEQEIIATTHTDNLKKQEILKRSTRLASGAAILAFLTVGIFTFLI 293

Query: 545 VTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             D  R +   + L E+ +      + +   +  VS++LR+PL  I G+++L++ +   S
Sbjct: 294 TRDYWRVQTYRQNLEEEKKFSESLLKSREQLISTVSHDLRTPLNTITGYSELMENT---S 350

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  KQ  Y++ + +++T + NLVND+LD + ++AG +K+     +L DL+ E  Q++   
Sbjct: 351 LTGKQIGYLKNVKSAATYVDNLVNDLLDFSKLEAGKLKIENIPFLLPDLIQETAQNLEEF 410

Query: 662 MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                I ++++ D KL  + + D  R+ QI + ++SNA  F+  G   ++       + +
Sbjct: 411 YKNKPIELQIVIDKKLHKTLIGDPFRIRQILTNLISNAYKFTQDGFIKVVATVTIENNAV 470

Query: 721 ----FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSI 774
                 V ++G  I ++  + +F  F         +  G GLGL+I +    L  G +++
Sbjct: 471 YKTRIQVIDSGIGIEKEKQEHIFKEFAQADDSTEKKYGGYGLGLTISKKLTELLQGTINL 530

Query: 775 SSSDEGVTTINCRIPSK 791
            S  +  +T    IP K
Sbjct: 531 KSDKDQGSTFTFTIPLK 547


>gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 918

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|197116409|ref|YP_002136836.1| HAMP/PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197085769|gb|ACH37040.1| sensor histidine kinase, HAMP and PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 754

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 108/571 (18%), Positives = 220/571 (38%), Gaps = 48/571 (8%)

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
           Q+  G + ++   +   R+ SS          +S       +  ++ R     G      
Sbjct: 208 QEVTGNNVEVTLTQRGLRVASSLPARVRESYILSPKVLDVLERGEVYRGRTDMGAKSY-- 265

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAI------FDQNRYLQFHNRSFVELWEIDLAFLA 347
               E  ++  L    E + +L+VAI+         +N      +     +    +A+ A
Sbjct: 266 ----ETIIDPLLNSRGEFVGSLSVAISTETVTNSRRENLQYILASAFLGIICSFAMAYFA 321

Query: 348 TNPSNDELLEFLRSANKLPE----QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           +      L +   SA ++ E    Q      ++ +  +  S     ++    +G      
Sbjct: 322 SRHLTGPLRQLAMSARRIEEGDLDQRVVGHQRDEVGMLASSFNNMAESLKERDG------ 375

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           + +   G    + E L  +  +E + + L   +      +  L+EGV V   D  + L N
Sbjct: 376 IINKKTGDLQELNEQL--EKMVEQRTSALSMEMGRLEAVLTSLAEGVVVTDRDNLVVLFN 433

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           PA + L++   +        R +  +  R    +   ++   +      E +  +  + +
Sbjct: 434 PAAQQLFELVPH--------RVVGQSVERLCEMTGFCNVLEQVSDKAQREPRCGKKEVTV 485

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
               +   +      A      V     V  E           + D +K  F+  VS+EL
Sbjct: 486 KGKRLHVNTATLQDEAGEFAGMVMSLRDVTKEE----------QVDRMKTEFISTVSHEL 535

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++PLT+I G   LL  ++   L   + Q +     ++  L+ L+++ILD++ +++G M  
Sbjct: 536 KTPLTSIKGSLQLLL-TRSKWLTDTERQLLTVCFRNTQRLIRLISEILDISGIESGGMIF 594

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N+  + + +L     + I +      I I       L     D  RL+Q+ + +LSNA+ 
Sbjct: 595 NFKPLCIGELAVYAVEEIKSLAMGREITIVNTVGEHLPMVFGDSDRLIQVMTNLLSNAVK 654

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
           FS +G  V++ A ++    + SV + G  I       +F +F    +  R +  G GLGL
Sbjct: 655 FSPEGKVVMVTAEQEGNYVVVSVADRGRVIQWSDRDKLFKKFQQIESTERNKIGGTGLGL 714

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I +  +  H G +  +++ E   T +  +P
Sbjct: 715 AICKEIVERHHGRIFYTAAKEYGNTFSFTVP 745



 Score = 38.4 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 11/142 (7%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              +   LS  +   + +  SL   V   D+   ++  N + ++  E   +V  + +G+S
Sbjct: 395 VEQRTSALSMEMGRLEAVLTSLAEGVVVTDRDNLVVLFNPAAQQLFE---LVPHRVVGQS 451

Query: 241 RKLFKEEIKK----RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-AGIAI-- 293
            +   E          +S  A  +  C        G         + +  GE AG+ +  
Sbjct: 452 VERLCEMTGFCNVLEQVSDKAQREPRCGKKEVTVKGKRLHVNTATLQDEAGEFAGMVMSL 511

Query: 294 -DVSKEITVNDQLTHTYEILHN 314
            DV+KE  V+   T     + +
Sbjct: 512 RDVTKEEQVDRMKTEFISTVSH 533


>gi|260551959|ref|ZP_05825821.1| sensor protein gacS [Acinetobacter sp. RUH2624]
 gi|260405362|gb|EEW98857.1| sensor protein gacS [Acinetobacter sp. RUH2624]
          Length = 935

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  
Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRK 334

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 335 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYAD 394

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    + D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 395 NIPQEVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIG 453

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGS 513

Query: 783 TINCR 787
           T    
Sbjct: 514 TFWFT 518


>gi|229171763|ref|ZP_04299335.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3]
 gi|228611660|gb|EEK68910.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3]
          Length = 896

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAANMHQNFLHIAAKKNVEFM 597

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARD------NG 717
           +  SD     F  D +R+ QI   +LSNA  F+ KGS       +      D      N 
Sbjct: 598 IEDSDAIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTHLSDDMQSISND 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WMTISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|226947584|ref|YP_002802675.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841756|gb|ACO84422.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 464

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +     +   +       L    + + K D++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 210 NFKVKSEKMFDDEFGELSDTLNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++++          ++ I   S  L  +V ++LD +   +G MKLN   I + ++++ V
Sbjct: 270 NSNEVDK--EILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEINICEIIDTV 327

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +    + N I  K     KL +   DR R+ Q+   +L NA  F+ +G  V L    
Sbjct: 328 RKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKY 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       VK+ G  I ++    V  +F        +   G+GLSI +  I LH G + I
Sbjct: 388 EEEYITIVVKDTGVGINKEDLPRVKEKFYKGNSGKSKN--GIGLSICDEIIKLHNGVLHI 445

Query: 775 SSSDEGVTTINCRIP 789
            S +   TTI+ ++P
Sbjct: 446 ESEENKGTTISIKLP 460


>gi|218890756|ref|YP_002439620.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218770979|emb|CAW26744.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 741

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRN 482
             E   +  + ++   +D +   V++   DGR+   N  +  SL  T E          +
Sbjct: 102 RTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDSD 161

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                           +      SF D    + G L  +   V  Y          M  +
Sbjct: 162 WVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQGRVLGLMNGW 221

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+      + 
Sbjct: 222 IDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRL--AP 279

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++   +E    ++  L  L+ DILD+A +++G + L    + L  ++  V++      
Sbjct: 280 EQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGD 718
            +  +R+ V  D   G   + D  R  Q+ S ++SNA+ F+ +G  V ++      D G 
Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERSLDEGR 398

Query: 719 FIFSV--KNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
            I  V  +++G  I       +F  F+  A     + G GLGL+I    ++L GG V + 
Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 776 SSDEGVTTINCRI 788
           S     T ++  +
Sbjct: 459 SEPGKGTRVSLDL 471



 Score = 39.2 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +   L         LS  +++ + L D + + V  R   G +L  N +Y ++        
Sbjct: 93  LQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQA 152

Query: 234 QKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNK---SYKIVRVLNSFG 287
           +  +       +    + M     + A       T   +  G       + +    +  G
Sbjct: 153 RGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQG 212

Query: 288 EAGIA----IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                    ID+++   +  QL            A ++F
Sbjct: 213 RVLGLMNGWIDITERERLARQLREAMRQADEANRAKSVF 251


>gi|172063287|ref|YP_001810938.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171995804|gb|ACB66722.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 663

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 23/371 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           V    +D   + +       RI   NPA R L+  +            IA    R +   
Sbjct: 145 VLRRVVDASPDAIVGVDVARRITSWNPAARRLFGIDAAAAIGHDVTTLIAPRWLRLHPVP 204

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-------- 546
             +    A     D       G+    +     ++  P+ +AQ   T +++T        
Sbjct: 205 ASFADAGAPAGPLDILCLRRDGSRFRAT-----FTASPIVDAQGNCTGLSMTLREARERR 259

Query: 547 ----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                 +R  R   +      +++ +K+  +  VS+ELR+PL  I G+ ++L++ +    
Sbjct: 260 RCEQRDLRMLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRSGEGQGF 319

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                Q ++ I  S+  L  +V D+LD +++  G ++L  + + L  ++ E  + I    
Sbjct: 320 ---AHQAIDAIDRSARSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQESVREIGETA 376

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N + +            AD +RL Q+ S +LSNA+ F+ +G  + +           S
Sbjct: 377 EANGLDLSTECAMPSCVIAADAERLRQLLSNLLSNAIKFTPRGGRIKVSLNPAGARVRLS 436

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-E 779
           V + G  I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V+ +S    
Sbjct: 437 VADTGQGISAERLPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAG 496

Query: 780 GVTTINCRIPS 790
             TT+   +P+
Sbjct: 497 RGTTVTVMLPA 507


>gi|15598240|ref|NP_251734.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9949149|gb|AAG06432.1|AE004729_6 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 741

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRN 482
             E   +  + ++   +D +   V++   DGR+   N  +  SL  T E          +
Sbjct: 102 RTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDSD 161

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                           +      SF D    + G L  +   V  Y          M  +
Sbjct: 162 WVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQGRVLGLMNGW 221

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+      + 
Sbjct: 222 IDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRL--AP 279

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++   +E    ++  L  L+ DILD+A +++G + L    + L  ++  V++      
Sbjct: 280 EQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGD 718
            +  +R+ V  D   G   + D  R  Q+ S ++SNA+ F+ +G  V ++      D G 
Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERSLDEGR 398

Query: 719 FIFSV--KNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
            I  V  +++G  I       +F  F+  A     + G GLGL+I    ++L GG V + 
Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 776 SSDEGVTTINCRI 788
           S     T ++  +
Sbjct: 459 SEPGKGTRVSLDL 471



 Score = 39.2 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +   L         LS  +++ + L D + + V  R   G +L  N +Y ++        
Sbjct: 93  LQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQA 152

Query: 234 QKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNK---SYKIVRVLNSFG 287
           +  +       +    + M     + A       T   +  G       + +    +  G
Sbjct: 153 RGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQG 212

Query: 288 EAGIA----IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                    ID+++   +  QL            A ++F
Sbjct: 213 RVLGLMNGWIDITERERLARQLREAMRQADEANRAKSVF 251


>gi|330685290|gb|EGG96951.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU121]
          Length = 608

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 153/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRV 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++N     +    +  L     +  +         E    D       SF  +    +G
Sbjct: 286 RIANDMALKMLGMAKEDLIGYYMLSVLN------LEEEFSLDEIQENNDSFLLDINEEEG 339

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++     +S I             + D    ++            +  +  FV +V
Sbjct: 340 IIARVN-----FSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+       N    Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYIEALEEGAWKDDN-LAPQFLSVTREETERMIRLVNDLLQLSKMDNE 442

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 443 SDQITKEIVDFNMFINKIINRHEMAA--KDTTFVREIPQQTIFAEIDPDKMTQVFDNVIT 500

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 501 NAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 560

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 GTGLGLAISKEIVEAHNGRIWANSVESQGTSIFITLPCE 599



 Score = 38.8 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             +     +      ++ +++  I   D+   ++  N   +++  +    L        +
Sbjct: 253 EAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALKMLGMAKEDL--------I 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
             ++ S   L E+ +    +EN  S        +      N  T+ V  T     G I +
Sbjct: 305 GYYMLSVLNLEEEFSLDEIQENNDSFLLDINEEEGIIARVNFSTI-VQETGF-VTGYIAV 362

Query: 416 FENLTVQVDLETKYNTL-----------VKVQGETIDHLSEG 446
             ++T Q  +E +               +      I+ L EG
Sbjct: 363 LHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEG 404


>gi|254236017|ref|ZP_04929340.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719]
 gi|126167948|gb|EAZ53459.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719]
          Length = 741

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRN 482
             E   +  + ++   +D +   V++   DGR+   N  +  SL  T E          +
Sbjct: 102 RTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDSD 161

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                           +      SF D    + G L  +   V  Y          M  +
Sbjct: 162 WVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQGRMLGLMNGW 221

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+      + 
Sbjct: 222 IDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRL--AP 279

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++   +E    ++  L  L+ DILD+A +++G + L    + L  ++  V++      
Sbjct: 280 EQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGD 718
            +  +R+ V  D   G   + D  R  Q+ S ++SNA+ F+ +G  V ++      D G 
Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERSLDEGR 398

Query: 719 FIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
            I    V+++G  I       +F  F+  A     + G GLGL+I    ++L GG V + 
Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGDVEMH 458

Query: 776 SSDEGVTTINCRI 788
           S     T ++  +
Sbjct: 459 SEPGKGTRVSLDL 471



 Score = 38.8 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +   L         LS  +++ + L D + + V  R   G +L  N +Y ++        
Sbjct: 93  LQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQA 152

Query: 234 QKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNK---SYKIVRVLNSFG 287
           +  +       +    + M     + A       T   +  G       + +    +  G
Sbjct: 153 RGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQG 212

Query: 288 -EAGIA---IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              G+    ID+++   +  QL            A ++F
Sbjct: 213 RMLGLMNGWIDITERERLARQLREAMRQADEANRAKSVF 251


>gi|265765367|ref|ZP_06093642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254751|gb|EEZ26185.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 389

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVR---AERALTEKNEALR 563
           E +      E      LE   IP     N + +    ++    R    E  LT   E   
Sbjct: 102 ELRFWAKKREGFVLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAE 161

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K++ + ++++E+R+PL  I+GF  LL    +     +Q +Y+  I +++  LL L
Sbjct: 162 EANRLKSALIANMNHEIRTPLNAIVGFASLLS---IIDDEKEQQEYIGLIQSNTEHLLRL 218

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND++DL+ +++G+M +  S +VL+ L+ E++ +   K   +N+ +    +        D
Sbjct: 219 MNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETDNLVLAWDREQSNAHIYTD 278

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R RL+QI   +L NA+ F++KG+       ++NG   F V + G  IP D  + +F RFV
Sbjct: 279 RDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFV 338

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 Q  G+GLGLS+ +  I    G + + S     +T    IP
Sbjct: 339 KLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|255535261|ref|YP_003095632.1| two-component sensor histidine kinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341457|gb|ACU07570.1| two-component sensor histidine kinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 576

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 175/394 (44%), Gaps = 18/394 (4%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVD--LETKYNTLVK---VQGETIDHLSEGVAVFGPDG 454
            V   SN   G +   F  +  +++   E+K + ++K        I++L + V     + 
Sbjct: 190 RVRFESNSEFGELARSFNTMAEKLEEYAESKLDKIIKGKKRIETLINNLHDPVIGIDENK 249

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           ++  +N     +   ++     G  I+++A T           DL   +I     + K  
Sbjct: 250 KVLFANGEALKISGIKKEHF-IGRQIQDVAVTNDLV------RDLIKELIQPEVGKTKEP 302

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                   +S  E  +I +    T      +   V   R +T   E     D  K +F+ 
Sbjct: 303 LKIFADGKESYFEKELIDIQVVPTGEKVSQLIGHVILLRNITPFKEL----DVAKTNFIG 358

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            VS+E ++P++++     LL+   +G+LN++Q + VE I   +  LL +  ++L+L  V+
Sbjct: 359 TVSHEFKTPISSMKMSIQLLENDHVGTLNTEQKELVENIKDDANRLLKITRELLNLTQVE 418

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +G ++L+       +L+    ++  T   +  + ++      +   +AD ++ + I   +
Sbjct: 419 SGNIQLSQEPADPKELVRRAVEATKTPAEQKKMTVEATLPENVSQVLADEEKTVWILINL 478

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           +SNA+ +S +G TV +K + +     F+VK+ GS IPE     VF+R+       Q+ G 
Sbjct: 479 ISNAIRYSYEGGTVKVKVSEEGDHVKFTVKDQGSGIPEQYLAKVFDRYFRVPG-TQKEGT 537

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL+I + FI   GG + + S     ++ +  +
Sbjct: 538 GLGLAISKEFIEAQGGTLRVESVWGSGSSFHFTL 571


>gi|157692028|ref|YP_001486490.1| sporulation sensor histidine kinase E [Bacillus pumilus SAFR-032]
 gi|157680786|gb|ABV61930.1| sporulation sensor histidine kinase E [Bacillus pumilus SAFR-032]
          Length = 731

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 114/632 (18%), Positives = 258/632 (40%), Gaps = 48/632 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIV 232
           +  +++   +  ++ S +  +FK LFD     +   DQ G ++ AN S+ ++ E  +  +
Sbjct: 128 VMRDISSKKILERERSMNEQLFKDLFDRAIDGMVIFDQDGCMIDANHSFCQSFELQKTDL 187

Query: 233 FQKAIGESRKLFK-EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
             + + E  +      ++  + S     K   E   TL+ G  K +++    N      +
Sbjct: 188 TDRYLNEFVEDENLPALQHLLTSLKETGKAKGELPVTLQSGQYKLFELTITSNVMSGFYM 247

Query: 292 AI--DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           +I  D++++  + ++L        EI  N   AI I+  +  +   N S   ++E+ +  
Sbjct: 248 SIMRDITEKRLMEEKLLKSEERFREIFENAMDAIIIWADDGEIVRANESACRIFELPMHS 307

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L       +L +FL  +++      ++  +      ++  E  +  + + NGQ   +  T
Sbjct: 308 LIGK----KLTDFLVKSDQR-----YRPTRRRYIRNHEIRE--ELLFRMANGQFKELEFT 356

Query: 406 SN---PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           S      G  + +  N++ +  +E +         +  +   +G+ +F    RI   NP+
Sbjct: 357 SKHAVLEGQHLTILRNVSDRKRMEEELRESELKFRKVFNGSMDGIVLFDNQYRIIEVNPS 416

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              L   +++ L+      N+    + Y  E       A  +   D+E   +   L    
Sbjct: 417 ASELLGLKDDHLTEM----NLFHILAPYQVEHLAQPAQAMSLDEMDNE---VPFVLNHPD 469

Query: 523 DSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +LE+S    + +   +  F +VT+    E  + + +                +++E+R
Sbjct: 470 QRILEFSFKRNIIHNMNLAIFRDVTERKELEERVRKSDTLHVVG-----ELAAGIAHEIR 524

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+T + GF  LLK    G++  + S Y   I++    + +++ + L LA   A    + 
Sbjct: 525 NPMTALKGFIQLLK----GNIEGEYSLYFNVITSELKRIESIITEFLILAKPQA----IV 576

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y    +  ++ +    +  + +  N+++ +    ++     ++ +L Q+F  IL NA++ 
Sbjct: 577 YEEKNVVQIVKDTMDLLHAQANLGNVQMHLNVMDEIPLIYCEQNQLKQVFINILKNAIEV 636

Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
             +   V +   R      + S+++ G  + ED  + +   F       + RG GLGL +
Sbjct: 637 MPRKGNVYVTIQRKGEEHIVISLRDEGCGMAEDKLRRLGEPFY----TTKERGTGLGLMV 692

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               I  H G + + S +   T  +  +P ++
Sbjct: 693 SYKIIEEHQGTIEVESEEGVGTVFHLTLPLRQ 724



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 109/288 (37%), Gaps = 32/288 (11%)

Query: 292 AIDVSKEIT----VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           A D+ K       +  +L     +L+    AI IFD++  +   N +   L +     L 
Sbjct: 8   AEDIRKLEKENEYLRTELMQQKMLLNKTLDAIFIFDKHLNIIQANEATCRLVQTSKEDLL 67

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTS 406
               N  +L+FL    K   + +   +       ++     ++    L NG+T ++   +
Sbjct: 68  ----NKSVLDFLYGIPKDKIECSLDLF-------FRKGTLRREISIQLENGETKYIEFVA 116

Query: 407 NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                    I +  +++ +  LE + +   ++  +  D   +G+ +F  DG +  +N +F
Sbjct: 117 EHDVLNQQYIVVMRDISSKKILERERSMNEQLFKDLFDRAIDGMVIFDQDGCMIDANHSF 176

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLEL 520
              ++ ++  L+               + E +       ++TS  +  K+   L  TL+ 
Sbjct: 177 CQSFELQKTDLTDRYLNE---------FVEDENLPALQHLLTSLKETGKAKGELPVTLQS 227

Query: 521 LSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               + E +I   + +   M    ++T+    E  L +  E  R+  E
Sbjct: 228 GQYKLFELTITSNVMSGFYMSIMRDITEKRLMEEKLLKSEERFREIFE 275


>gi|17228673|ref|NP_485221.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130525|dbj|BAB73135.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 922

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L     A   A++ K+ F+  +S+ELR+PL  I+G+  +L+ S+  ++     + +  
Sbjct: 439 QELETAKIAADVANQAKSEFLASMSHELRTPLNGILGYAQILERSE--NIAPAALEGINI 496

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I    + LL L+NDILDL+ ++AG ++L+ +    +  L  V +    +  +  I    +
Sbjct: 497 IHQCGSHLLILINDILDLSKIEAGKLELHNTDFDFSYFLTGVVEMCRIRALQKGISFHYL 556

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNG 727
            D  L  +  AD +RL QI   +L NA+ F+  G       +L+A  D     F V++ G
Sbjct: 557 PDPDLPQAINADEKRLRQIIINLLGNAIKFTETGGVNFTIQVLEAGADFNKIRFQVEDTG 616

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             +  +    +F  F        Q  G GLGL+I      L G  + + S     +    
Sbjct: 617 VGMTPEQLTKIFLPFEQVGDKNKQAEGTGLGLAISCRIAELMGSQIQVDSILGTGSKFWL 676

Query: 787 RI 788
            +
Sbjct: 677 DL 678


>gi|265997787|ref|ZP_06110344.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M490/95/1]
 gi|262552255|gb|EEZ08245.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M490/95/1]
          Length = 367

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/338 (25%), Positives = 162/338 (47%), Gaps = 15/338 (4%)

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++N   R+  +T E +LS G  ++      +    +  G       IT     ++ L  
Sbjct: 27  RMANEHNRAGGQTFERQLSDGRWLQ-----VNERRTQDGGMVSIGTDITQLKLHQERLVD 81

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +   L  +V + SI        +       +     R  + + E    A+  K+ F+ ++
Sbjct: 82  SERRLMATVHDLSIARKGERDRVR------ELSELARKYSLEKERAEAANRAKSEFLANM 135

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           S+ELR+PL  IIGF+++++    G L + +  +Y+  I  S   LLN++NDILD++ ++A
Sbjct: 136 SHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEA 195

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G   L+   I L  L+NE  + I+ +  E NI ++   +  +    ADR+ + Q+   +L
Sbjct: 196 GHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRRAIKQVLINLL 254

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
           SNA+ F+S G  + ++A +       ++++ G  IP+   + +   F    +       G
Sbjct: 255 SNAVKFTSYGGRITVRARKTGAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTG 314

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+I  S   LHGG + I S++   T ++  IP +
Sbjct: 315 SGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIPDR 352


>gi|168184843|ref|ZP_02619507.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237793673|ref|YP_002861225.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182672106|gb|EDT84067.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229263106|gb|ACQ54139.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 464

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +     +   +       L    + + K D++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 210 NFKVKSEKMFDDEFGELSDTLNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++++          ++ I   S  L  +V ++LD +   +G MKLN   I + ++++ V
Sbjct: 270 NSNEVDK--EILKDGLKIIEDESERLSGMVEELLDFSKFVSGKMKLNKEEINICEIIDTV 327

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +    + N I  K     KL +   DR R+ Q+   +L NA  F+ +G  V L    
Sbjct: 328 RKQLEPYAYRNRINFKATCINKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKC 387

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +       VK+ G  I ++    V  +F        +   G+GLSI +  I LH G + I
Sbjct: 388 EEEYITIVVKDTGVGINKEDLPRVKEKFYKGNSGKSKN--GIGLSICDEIIKLHNGVLHI 445

Query: 775 SSSDEGVTTINCRIP 789
            S +   TTI+ ++P
Sbjct: 446 ESEENKGTTISVKLP 460


>gi|153828803|ref|ZP_01981470.1| sensor histidine kinase FexB [Vibrio cholerae 623-39]
 gi|148875679|gb|EDL73814.1| sensor histidine kinase FexB [Vibrio cholerae 623-39]
          Length = 785

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVKVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|115376518|ref|ZP_01463751.1| two-component hybrid sensor and regulator, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366451|gb|EAU65453.1| two-component hybrid sensor and regulator, putative [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1090

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 170/393 (43%), Gaps = 27/393 (6%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQV--DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            +   +   G  +    N T      L        +     ++ +++GV +      I +
Sbjct: 251 RLQAFTEDDGVLLDTLANQTADAIQSLRAVEEEARRRIERMVEAMADGVLLTDEQNAIVV 310

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA R L +  E           ++A   +   E  G+     I        + LQ  +
Sbjct: 311 INPAARRLLRVTE----------EVSALTGQMLEERLGFQPSELIRGWEYSGSQMLQEEV 360

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           EL  D  ++ ++ P+ +A+  L  V V      E+ +          +E K+ FV  VS+
Sbjct: 361 ELF-DRHIQCTVTPVNDARGTLKGVCVVLRDVTEQKML---------EERKDEFVSMVSH 410

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT+I G  DL+     G +N KQ +Y+     S+  L +LV+D+LDLA    G +
Sbjct: 411 ELRTPLTSISGALDLVLNFLAGDINEKQQRYLFMARESTEKLNSLVDDLLDLAKFAKGRL 470

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           ++N+    L++L+    +       E  +++ +         +AD  R+ Q+ + +L+NA
Sbjct: 471 RMNFELTYLDELVRRAAEKYGPAFQERRVKVLMTLPQHGLRVLADPSRVNQVLNNLLTNA 530

Query: 699 MDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRG 753
           + F+ +G  V L+    +   G    S  N+G  I E+  + +F+RF           RG
Sbjct: 531 VKFTPEGGEVRLELKATSALPGHVALSCWNSGEPIAEESLERIFDRFEQARTPSNRTVRG 590

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            GLGL+I    +  HGGH+    S EGV  +  
Sbjct: 591 TGLGLAICRHIVEAHGGHIWCEPSTEGVRFVTV 623


>gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 918

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|323694410|ref|ZP_08108581.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum
           WAL-14673]
 gi|323501491|gb|EGB17382.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum
           WAL-14673]
          Length = 801

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/402 (21%), Positives = 153/402 (38%), Gaps = 31/402 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFG--------PDGRIKLSNPAFRSLWKTEEN 472
            ++         V+   E+ D + EG                     +P+F    K   +
Sbjct: 248 ARIRERQANRRFVRAVNESYDEIYEGELYTDYLRQWKGEKSTPYFRFSPSFSEQIKWAAD 307

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +          +  S    + D  +  + +  S+     S       L   + E +I  
Sbjct: 308 TIVHPEEKEVFLSRLSPDRLKEDFENGKSEVTISYRRLTPSGSYRWHSLYVRLSEMTIDC 367

Query: 533 LPNAQTMLTFVN-VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           +     +    +   +  R +R L        KA+E K  F+  +S+++R+P+  I+G  
Sbjct: 368 IRVMLYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMA 427

Query: 592 DL----LKTSKLGSLN----------SKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +    L++   G+ N          +K    +E I  SS  LL+L+NDILD++ +++G 
Sbjct: 428 SVARFVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGK 487

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILS 696
           MK+    + L D +  +K  I  +  E      V    ++G F   D  RL QI   +L 
Sbjct: 488 MKIANREMNLKDAIRNIKVMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLG 547

Query: 697 NAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
           NA+ ++ +   + L     K         F + + G  + E+    +F+ F      G R
Sbjct: 548 NALKYTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSR 607

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              G GLGLSI    + L  G +S  S     T    +IP K
Sbjct: 608 IFEGTGLGLSISRKLVELLNGTISAESEPSKGTVFTVKIPMK 649


>gi|311898710|dbj|BAJ31118.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1549

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 27/307 (8%)

Query: 510  ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            E ++ Q  LE  ++ + E +       + +    +  +   A + L E+ E L +A   K
Sbjct: 1042 ELEARQEELERTNEELQEKAEQLAQQNRDIEIKNSEIED--ARQILEERAEQLSQASRYK 1099

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            + F+ ++S+ELR+PL +++    LL  +  G+L++KQ ++ E I  + + LL L+NDILD
Sbjct: 1100 SEFLANMSHELRTPLNSLLILAKLLSDNNEGNLSAKQVEFAETIHGAGSDLLQLINDILD 1159

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLL 688
            L+ V+AG M +  + I L  L++ V+ +      + N+   V    +L  +   D QRL 
Sbjct: 1160 LSKVEAGKMDVRPARIALVQLVDYVEAAFRPLAADKNLDFAVRVSPELPPTLHTDEQRLQ 1219

Query: 689  QIFSKILSNAMDFSSKGSTVILK----------------------AARDNGDFIFSVKNN 726
            Q+   +LSNA+ F+  G+  ++                       A  D     FSV + 
Sbjct: 1220 QVLRNLLSNAVKFTDNGAVELMIRPVAGPEIPQHVREQLLESGTMADPDEPLIAFSVADT 1279

Query: 727  GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP D  + +F  F         +  G GLGLSI      L GG + + S     +  
Sbjct: 1280 GIGIPGDKLREIFEAFKQADGGTSRKYGGTGLGLSISREIARLLGGEIHVESQIGSGSAF 1339

Query: 785  NCRIPSK 791
               +P +
Sbjct: 1340 TLYLPLR 1346


>gi|307824890|ref|ZP_07655112.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307733937|gb|EFO04792.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 860

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 157/400 (39%), Gaps = 38/400 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT----- 478
           + E     L+  Q   +D+++ G+    PDG +   N A  SL     + +         
Sbjct: 230 EREDDLRRLMLFQRTLLDNVAHGIISTAPDGTVTSFNRAAESLLGYTADEVIGKQTPALW 289

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--------VLEYSI 530
           H     A  + + +E  G  +           R++L    E             +L  + 
Sbjct: 290 HDTEEVAQYALHLSEELGETILPGFAVFSARPRRNLTEEKEWTFIRKNGARVPVLLSVTA 349

Query: 531 IPLPNAQ---TMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIK 569
           +   + Q    +    ++T+  +AE  L    + L +                   ++ K
Sbjct: 350 LRTESGQITGFVGLTYDLTERKQAENELRRHKDQLEETVQQRTADLLLARDAAEAANKAK 409

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
             F+ H+S+ELR+PL  I+G+  +L+  +L  +  +++  +  I  SS  L  L++DILD
Sbjct: 410 GLFLAHMSHELRTPLNGILGYAQILQRDEL--VGERKAAALNIIRQSSEYLRALIDDILD 467

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLL 688
           L+ ++ G +    S I L   L  V   +  +  +  +         L +    D +RL 
Sbjct: 468 LSRIETGRLDFVLSNISLAKFLRGVTDIVGLRARQKGLEFSCELAADLPAGIRCDERRLR 527

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAH 747
           Q+   +L+NA+ F+  G  V+         F F+V++ G  I ++  + +F  F      
Sbjct: 528 QVLLNLLTNAVKFTDSGQVVLRVGRVGPSRFSFAVEDTGIGIEQNELELIFRPFEQVGDL 587

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +  G GLGL+I    +   G  + + S     +T    
Sbjct: 588 QRRLGGTGLGLAISRQLMRYLGSDIVVESRVGKGSTFRFE 627



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 88/271 (32%), Gaps = 29/271 (10%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           ++ R+  SF     AI   +E  +   +     +L N+   I     +  +   NR+   
Sbjct: 213 EVARLSQSFNAMMDAI-QEREDDLRRLMLFQRTLLDNVAHGIISTAPDGTVTSFNRAAES 271

Query: 338 LWEIDLAFLATN------PSNDELLEF-LRSANKLPEQ--LNWKTWKENIFSVYKSSETH 388
           L       +            +E+ ++ L  + +L E     +  +          +E  
Sbjct: 272 LLGYTADEVIGKQTPALWHDTEEVAQYALHLSEELGETILPGFAVFSARPRRNL--TEEK 329

Query: 389 KDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           + T+   NG  + V+++       S    G + +  +LT +   E +         ET+ 
Sbjct: 330 EWTFIRKNGARVPVLLSVTALRTESGQITGFVGLTYDLTERKQAENELRRHKDQLEETVQ 389

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLF 500
                         + L+  A  +  K +   L+  +H +R        Y       +L 
Sbjct: 390 Q---------RTADLLLARDAAEAANKAKGLFLAHMSHELRTPLNGILGYAQILQRDELV 440

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                +  +  +     L  L D +L+ S I
Sbjct: 441 GERKAAALNIIRQSSEYLRALIDDILDLSRI 471


>gi|206562095|ref|YP_002232858.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038135|emb|CAR54085.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 1011

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 154/374 (41%), Gaps = 23/374 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
             +      +    ++    G+A+    DG + L N   R          S     R + 
Sbjct: 398 TRRVIDSENLNRTIVEAAPSGIALLSLADGAVLLQNDTMRDYDARRAGEPS--LPARLLE 455

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                    +   DL   + T+  +   ++   + L+     +  ++       +  F +
Sbjct: 456 HFDRSPAAAAWQPDLHVTLPTAGGE---TVDLLVNLVRTRFRDTDVV-------LCNFSD 505

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T     ER L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+    L +   
Sbjct: 506 ITSQKNIERQLDEAARAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGREPLAAT-- 563

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + ++ +  +S++LL+L+NDILDL+ ++AG M +      L + + +           
Sbjct: 564 -QRERLQTVEGASSVLLDLINDILDLSKIEAGQMTIEAIPFDLAETIRQTGAMFEPLATA 622

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----F 719
             ++  V  D  L + ++ D  R+ QI + ++ NA+ F++ G   +    RD+ D     
Sbjct: 623 KGLQFDVFVDDALPARYLGDPTRIRQIAANLVGNAIKFTNHGEITLEVYLRDDTDPASPI 682

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  + +    ++F  F         +  G GLGL++ +    +  G V + S 
Sbjct: 683 AIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKQLTQMMHGTVDVKSE 742

Query: 778 DEGVTTINCRIPSK 791
               +T    +P +
Sbjct: 743 PGKGSTFVVTLPLR 756


>gi|148655756|ref|YP_001275961.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148567866|gb|ABQ90011.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 899

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 151/363 (41%), Gaps = 24/363 (6%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +       +   ++ +++GV V     RI + N A   +    + RL       +I  T 
Sbjct: 541 RVQREALRRRAILESIADGVVVLDRQRRILIVNRAAEQMLGMSDWRLVQ-RSFSDIPLTR 599

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
               +E                E  + Q  L  L D VL  S  P+   +          
Sbjct: 600 VEVRHEMFS-------------ENGATQRDLYRLGDRVLRLSHAPVTTDEGTQIG----- 641

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E  +     A    D+ K  F+  +S+ELRSPLT I G+TDLL    +G L+ +Q 
Sbjct: 642 ----EVVVLHDISAEVAVDQAKTDFIATISHELRSPLTVIYGYTDLLLRGMVGELSGEQR 697

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +E +     ++ N+V +++ +A+++A  ++ +++   +  +++E    +     +  +
Sbjct: 698 DLLEAVRNRVELMNNIVRNVIMVASIEANTLQTDFAAQDVRRMIDEAVAPMRKSFEKKGL 757

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V +   L    ADR++LL I  +++ NA  ++ +G   I    RDNG     V + G
Sbjct: 758 ALTVTTPDDLPPVRADREQLLIILGQVIDNARRYTQQGEVTITAHQRDNGMVQIDVSDTG 817

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             IP D    +F RF          RG GLGL I    +  HGG V   S     +T + 
Sbjct: 818 PGIPADAMNRLFTRFFRVEGNNSPERGSGLGLVITRQLVERHGGKVWAHSEVGRGSTFSI 877

Query: 787 RIP 789
            +P
Sbjct: 878 ALP 880



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V  +      IL ++   + + D+ R +   NR+  ++  +    L     +D  L  +
Sbjct: 541 RVQREALRRRAILESIADGVVVLDRQRRILIVNRAAEQMLGMSDWRLVQRSFSDIPLTRV 600

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRG---GTIW 414
              +++                 ++  T +D + L + + L +         G   G + 
Sbjct: 601 EVRHEM---------------FSENGATQRDLYRLGD-RVLRLSHAPVTTDEGTQIGEVV 644

Query: 415 MFENLTVQVDLETK 428
           +  +++ +V ++  
Sbjct: 645 VLHDISAEVAVDQA 658


>gi|295097349|emb|CBK86439.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 919

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKSELNPTQRDHLHTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L++V   +A   H+  + + +  
Sbjct: 335 ERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSV--KNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R   N      V  ++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQTRLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|188533372|ref|YP_001907169.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia tasmaniensis Et1/99]
 gi|188028414|emb|CAO96275.1| Sensor kinase protein (Capsular synthesis regulator component C)
           [Erwinia tasmaniensis Et1/99]
          Length = 951

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/490 (20%), Positives = 198/490 (40%), Gaps = 52/490 (10%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + + DQN      +      +  D       P +     ++   ++L  + N  +
Sbjct: 242 SLPMTVTLVDQNNRRVLTSERGEAKFSAD-----DLPDDPTWFGYISGYSRLVMKKNLPS 296

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              ++     +SE  +    L     ++ I+ +   G  +  F  L  +       D   
Sbjct: 297 SSLSVVYTVATSEMIERLKML----IVNAILLNLISGIIVVTFARLFERRMFLPAEDNAY 352

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L       L+    +R     
Sbjct: 353 RLEEQEQFNRKIVASAPVGICILRTSDGTNILSN----ELAHNYLTLLTQEDRLRLTEMI 408

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFV 543
           C +  N       F  ++T                S++ L+ S +          +   V
Sbjct: 409 CGQQVN-------FVDVLTG---------------SNTNLQISFVHSRYRNENVAICVLV 446

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+  V+ E++L E  +   +A E K+ F+  VS+ELR+PL  IIG  DLLKT    +L 
Sbjct: 447 DVSARVKMEQSLHEIAKEAEQASESKSMFLATVSHELRTPLYGIIGNLDLLKTK---ALP 503

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +    + 
Sbjct: 504 AGAESLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMVV 563

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+         F 
Sbjct: 564 KKRLTLWCFINSDVPVLMEGDPMRLQQVISNLLNNAIKFTHTGG-IILQVYVKGDYLTFC 622

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  I       +F+ FV      +   +G GLGL+I E  +N+  G + + S  + 
Sbjct: 623 VRDSGVGISAKELTRLFDPFVQVGSGVQRNFQGTGLGLAICEKLMNMMDGDIEVDSEPDM 682

Query: 781 VTTINCRIPS 790
            +    RIP 
Sbjct: 683 GSQFVVRIPL 692


>gi|17232370|ref|NP_488918.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134015|dbj|BAB76577.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 941

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 21/257 (8%)

Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER   +T   E    A+  K+ F+ ++S+ELR+PL  I+G+  +L+     + N +Q Q
Sbjct: 454 AERTAEITAAKEVADAANRAKSEFLANMSHELRTPLNGILGYAQILQLD--SNTNDEQMQ 511

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I    + LL L+NDILD+A ++A  ++L      L  LL  V +    K+ +  I 
Sbjct: 512 GLNTIYECGSHLLTLINDILDIAKIEAKKLELYPQEFDLGRLLLGVCEMCHIKVEQKGIS 571

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG------- 717
            K   +  + S   AD +R+ Q+   ILSNA+ F+  G+    V + A            
Sbjct: 572 FKYQFNDYIPSKTFADEKRIRQVLINILSNAIKFTDNGTVTFDVEVVACTGTKLITNTNQ 631

Query: 718 -----DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   F +++ G  + ++  K +F  F     +  +  G GLGL+I    + L G  
Sbjct: 632 ILPVHQLRFQIEDTGIGMTDEQLKKIFLPFEQVGDNLHKSEGTGLGLAISSQILELMGSD 691

Query: 772 VSISSSDEGVTTINCRI 788
           + + S     T     +
Sbjct: 692 IKVESVYGKGTKFWFDL 708


>gi|116620185|ref|YP_822341.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223347|gb|ABJ82056.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 630

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 116/252 (46%), Gaps = 6/252 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             + +  R    L    E    A   K  F+ ++S+E+R+P+  ++G   L+   +   L
Sbjct: 233 QQIMERNRVNAELLAAKERAEDAARQKTQFLANMSHEIRTPMNGVMGMISLVLDHE---L 289

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +S+  +++    +++  L+ ++NDILDL+ ++AG M        L+ L+ +     ++  
Sbjct: 290 DSQDREHLLMAQSAAQSLIIILNDILDLSKIEAGKMTFETVDFDLHRLIGDAMGIFSSAA 349

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               + + +        +V  D  RL QI   ++ NA+ F++ GS  +  A   +    F
Sbjct: 350 IAKGLDLGIDLAPDSPRWVRGDPVRLRQILINLVGNAVKFTAAGSVRLTLAPHLDNLVRF 409

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V++ G  +P+D  +++F  FV     H  Q  G GLGL+I    + L  G +   S   
Sbjct: 410 AVRDTGIGVPKDQMEAIFEAFVQADGSHTRQFGGTGLGLAITRRLVALMEGTLWAESQSG 469

Query: 780 GVTTINCRIPSK 791
             +T    +P +
Sbjct: 470 CGSTFFVELPVQ 481


>gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
 gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
          Length = 935

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 140/325 (43%), Gaps = 16/325 (4%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                +  I     R   ++ G  +           ++ +   ++ L  S LE       
Sbjct: 197 RWIAPMYEIRMQLQRLNADTLGQHMVINSTGELRLLQRDIANVVKRLHFSFLELREHTEQ 256

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +   ++  +         +  +    A++ K+ F+ ++S+ELR+PL +I GF  LL
Sbjct: 257 TEDDLRRTLDTLEVQNI--TYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLL 314

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G+L+++QS Y++ I  SS  LL L+ND+LD + +DAG ++L  +   L + + +V
Sbjct: 315 LRQ--GNLSNEQSLYLQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDV 372

Query: 655 KQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++    + +I +    +DG     + D  R  QI + ++SNA+ F+  G  ++    
Sbjct: 373 MDMLSPLAAQKHIDMAFYYADGVPKHIIGDALRFKQILTNLISNAIKFTPDGEIIVRARM 432

Query: 714 RDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
             +G       FSV+++G  +     K +F  F         Q  G GLGL+I +  ++L
Sbjct: 433 EHDGMDQCVLHFSVQDSGIGLSGTDRKKLFESFSQGDTSVTRQFGGTGLGLAISKQLVSL 492

Query: 768 HGGHVSISSSD-----EGVTTINCR 787
             G +    +      E  +T    
Sbjct: 493 MHGQIGFEDNQERAPTEKGSTFWFT 517


>gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
 gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
          Length = 1014

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 396 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 440

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 441 -ARTSDEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 499

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 500 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 559

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 560 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 616

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 617 DAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 676

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 677 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 736

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 737 GGSIEIDSLPDFGTTVTVALPLRE 760


>gi|217965615|ref|YP_002351293.1| sensor protein YycG [Listeria monocytogenes HCC23]
 gi|217334885|gb|ACK40679.1| sensor protein YycG [Listeria monocytogenes HCC23]
 gi|307569836|emb|CAR83015.1| sensory box histidine kinase [Listeria monocytogenes L99]
          Length = 610

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 159/409 (38%), Gaps = 28/409 (6%)

Query: 386 ETHKDTWHLPNGQTLH-VIVTSNPRGGTIW-MFENLTVQV-DLETKYNTLVKVQGETIDH 442
           E  +  + +  G     V V      G +   F  LT +V + +       +     + +
Sbjct: 215 EMKRQVYAMARGNYSRKVKVYGVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAY 274

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +++GV      G++ L N     + + + +  + G  I ++      Y      ++    
Sbjct: 275 MTDGVIATDRRGKVILINTPAEKMLRVK-HESANGRSIIDVLDIGDTY-----QFEDLME 328

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +  S   +R +      L ++    +S+I             + D    E          
Sbjct: 329 VDGSLTMDRSTFDKPYVLRAN----FSVIQRETGFNNGVIAVLHDITDQE---------- 374

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            K D+ +  FV +VS+ELR+PLT++  + + L             +++E     +  ++ 
Sbjct: 375 -KVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAWED-KEIAPRFLEVTQNETERMIR 432

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LVND+L L+ +D G  +L  S +   D  N +       M +  I  K     +      
Sbjct: 433 LVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEI 491

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  +++Q+   I+SNA  +S  G  +     +   +   S+ + G  +P++   +VF+RF
Sbjct: 492 DEDKVMQVLDNIISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRF 551

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             V  A   +  G GLGL+I    I  HGG +    +    T I   +P
Sbjct: 552 FRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 600


>gi|212527504|ref|XP_002143909.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
 gi|210073307|gb|EEA27394.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
          Length = 2403

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A   K+ F+ +VS++LR+P+  +IG ++LLK +K   L+ +Q  YV
Sbjct: 1868 AEAEANHNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLSELLKGTK---LDKEQDNYV 1924

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + L + ++EV +++     +  +   
Sbjct: 1925 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLSLKETISEVVRALRYTHRDRGLETI 1984

Query: 671  VISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVK 724
               D   +    + D  RL QIF  +LSN+  F+ KG   V     R+         SV 
Sbjct: 1985 EDLDMVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPKGHVKVTAMVVREGKGRVRLECSVS 2044

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F    +       G GLGLSI ++ I  + GG + + S+    
Sbjct: 2045 DTGIGIPEEHKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWLDSTPGVG 2104

Query: 782  TTINCRI 788
            TT+  ++
Sbjct: 2105 TTVTFQL 2111


>gi|164685702|ref|ZP_01946761.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii 'MSU Goat Q177']
 gi|164601209|gb|EAX32628.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii 'MSU Goat Q177']
          Length = 669

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 110/486 (22%), Positives = 209/486 (43%), Gaps = 32/486 (6%)

Query: 329 QFHNRSFVELWEIDLAFLATNPS------NDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            + + +F  ++ I    L  NP+        E  + LR      +  N K     +   Y
Sbjct: 42  VYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRLRHLIMEWQVKNKKGAAYTVD--Y 99

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +  + + +  H  N  +  V       G    + ++++ +     +++  V      ++ 
Sbjct: 100 RIIDAYGEM-HWINETSYPVYEDDQCLGY-AGVVKDVSSEKLRVKEFDNAVHYFRHFVER 157

Query: 443 LSEGVAVFGPDG-RIKLSNPAFRSLWKT-EENRLSPGTHIRN--IAATCSRYYNESDGWD 498
           +S    V G  G +    +P +  +W    E+         +  +    S      + ++
Sbjct: 158 VSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNPKSWIDYVLPEDISNGKVNVNFYE 217

Query: 499 LFAAIIT-----SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             A   T      F    +   G +  + D+               +      D++R E+
Sbjct: 218 TAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIMENGKLVGFAGIAEDVTNDALR-EK 276

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+ +Q   ++ I
Sbjct: 277 ELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLSDEQQGQIDVI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H+  I++K   
Sbjct: 334 SQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFDY 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
              + S  + D +R+ Q+   +LSNA+ F+ KG  V L A     D       F+VK+ G
Sbjct: 394 PENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQLTANCLKKDHKKMTLCFTVKDTG 452

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +    S+FNRF    + ++ +  GVGLGLSIV+  +   GG +S++S     +   
Sbjct: 453 IGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFT 512

Query: 786 CRIPSK 791
           C IP +
Sbjct: 513 CIIPFR 518


>gi|161830656|ref|YP_001596642.1| PAS/histidine kinase/ATPase domain-containing protein [Coxiella
           burnetii RSA 331]
 gi|161762523|gb|ABX78165.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 331]
          Length = 669

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 110/486 (22%), Positives = 209/486 (43%), Gaps = 32/486 (6%)

Query: 329 QFHNRSFVELWEIDLAFLATNPS------NDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            + + +F  ++ I    L  NP+        E  + LR      +  N K     +   Y
Sbjct: 42  VYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRLRHLIMEWQVKNKKGAAYTVD--Y 99

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +  + + +  H  N  +  V       G    + ++++ +     +++  V      ++ 
Sbjct: 100 RIIDAYGEM-HWINETSYPVYEDDQCLGY-AGVVKDVSSEKLRVKEFDNAVHYFRHFVER 157

Query: 443 LSEGVAVFGPDG-RIKLSNPAFRSLWKT-EENRLSPGTHIRN--IAATCSRYYNESDGWD 498
           +S    V G  G +    +P +  +W    E+         +  +    S      + ++
Sbjct: 158 VSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNPKSWIDYVLPEDISNGKVNVNFYE 217

Query: 499 LFAAIIT-----SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             A   T      F    +   G +  + D+               +      D++R E+
Sbjct: 218 TAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIMENGKLVGFAGIAEDVTNDALR-EK 276

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+ +Q   ++ I
Sbjct: 277 ELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLSDEQQGQIDVI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H+  I++K   
Sbjct: 334 SQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFDY 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
              + S  + D +R+ Q+   +LSNA+ F+ KG  V L A     D       F+VK+ G
Sbjct: 394 PENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQLTANCLKKDHKKMTLCFTVKDTG 452

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +    S+FNRF    + ++ +  GVGLGLSIV+  +   GG +S++S     +   
Sbjct: 453 IGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFT 512

Query: 786 CRIPSK 791
           C IP +
Sbjct: 513 CIIPFR 518


>gi|325921446|ref|ZP_08183302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548088|gb|EGD19086.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 1054

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 126/243 (51%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K G+L+ +Q +Y 
Sbjct: 348 AQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSPEQVKYA 407

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L   TI  + +L  ++++      +  + ++
Sbjct: 408 QAILSSNNDLLALINDILDLSKIEAGHVELADETIATSSVLQRLRETFEPLARQKGLALQ 467

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D    +  V D QRL QI   +L+NA+ F+  GS  +   A+  G  +F V++ G  
Sbjct: 468 ITADADAPTQLVMDSQRLQQILKNLLANAIKFTEHGSVSLSLQAQAPGRVLFKVQDTGIG 527

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG + + S     +     
Sbjct: 528 IAREQTEIIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSIRVDSEPGRGSCFTLE 587

Query: 788 IPS 790
           +P+
Sbjct: 588 LPT 590


>gi|254787007|ref|YP_003074436.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
 gi|237685955|gb|ACR13219.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
          Length = 668

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 173/445 (38%), Gaps = 23/445 (5%)

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNP-RGGTIWMFE------N 418
             +   +++ + +  +        + L    G  L V V     R  + W  +      N
Sbjct: 78  PDDRALFQQAVTATIREGVALDLCYRLQAKAGYYLWVRVNGQGFRDASGWTHQLAGANYN 137

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++     E             I    +GV  +  D  +   +             +    
Sbjct: 138 ISQLKQTEQALRASEARYSRIIAGTRDGVWDWSFDNNVISFSDICWEQIGFTAEDVRE-L 196

Query: 479 HIRNIAATCSR-------YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           ++  IA   +R        + E+    +        + + K+  GT   +          
Sbjct: 197 NLTTIADWEARMSPVDVKRFKEALRKHILERAPFDIEYQIKAKDGTQRWIRARAEATYNK 256

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                +   + +++T+    + A+ +   A  +A++ K+ F+  +S+ELR+PL  I+G+ 
Sbjct: 257 EGRAVKISGSNMDITELKNTQLAVVQAKVAAEQANQAKSEFLSSMSHELRTPLNAILGYV 316

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L       +L   Q   ++ +  + T LL+L+N++LDLA ++AG M L+   +    LL
Sbjct: 317 QLF--DYDTNLTPDQCDNLQEVKKAGTHLLHLINEVLDLAKIEAGRMTLSMEPVYPQRLL 374

Query: 652 NEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +E  + ++    E  I I+  +   +  +  AD  RL Q    ++SNA+ +++K  +V +
Sbjct: 375 DEAVRLVSPLAQEQGITIERDALQHQQSAIFADNTRLKQALLNLISNAVKYNTKDGSVNI 434

Query: 711 KA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLH 768
              A   G     V + G  IP+ +   VF  F       G   G G+GL I +  + + 
Sbjct: 435 SLTAVGEGRLRIMVTDTGRGIPDALQAQVFEPFNRLHAELGAVEGSGVGLVITKRLVEMM 494

Query: 769 GGHVSISSSDEGVTTINCRIP-SKE 792
           GG +   S     +     +P +KE
Sbjct: 495 GGTLGFHSEVGVGSRFWMDLPLAKE 519


>gi|163803362|ref|ZP_02197238.1| sensor histidine kinase FexB [Vibrio sp. AND4]
 gi|159172824|gb|EDP57666.1| sensor histidine kinase FexB [Vibrio sp. AND4]
          Length = 788

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 158/377 (41%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEVLTGRKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   +++  ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEVAKHIVDTDQKVF-------ADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q +Y++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 313 ---LTQEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPTPLNFEDFVAEIESIS 369

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  ++
Sbjct: 370 ALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADLED 429

Query: 717 G--DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                I  V++ G  IP++    +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 DFATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 490 ITVASEEGFGSTFTVSI 506



 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 59/163 (36%), Gaps = 11/163 (6%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADG 175

Query: 214 DILWANISYKKNT---ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
                N + +  T   E + +        S+++ K  +       +  +    E      
Sbjct: 176 VFSGCNRAMEVLTGRKEHQLVGLSPWDVYSKEVAKHIVDTDQKVFADNQAITYEQWLEYP 235

Query: 271 HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
            G    +++ +V          G  G   D+++     + L  
Sbjct: 236 DGRKHYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|305667709|ref|YP_003863996.1| two-component system sensor histidine kinase/response regulator
            [Maribacter sp. HTCC2170]
 gi|88709759|gb|EAR01992.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Maribacter sp. HTCC2170]
          Length = 1356

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 152/334 (45%), Gaps = 9/334 (2%)

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            A++ L    E        I+ +      Y  + +G+          + E+  L+  LE+L
Sbjct: 744  AYKLLPTDSEWIFLKDPEIQFLNLPSGDYTLQVNGFS------RGKEWEQAPLEMNLEIL 797

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                  +    +     +           +++    ++  L++ +++KNS   ++++E R
Sbjct: 798  PPWWTTWWAYLIYAGIAVAIADRFYRFQLSKKLAVSESARLKEVNQLKNSLYDNITHEFR 857

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +PLT I+G TD L++          +  VE I  +   LL+LVN++LDL+ +++G ++ N
Sbjct: 858  TPLTVILGMTDALESELNTKTTPPINNAVEMIRRNGNNLLSLVNEMLDLSKLESGHLETN 917

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             + I +   +  + +S  +   E+ I   V S+        D  +L  I S +LSNA+ F
Sbjct: 918  MAQINVVPFIKYLGESFQSFAQEDEIHFTVYSEVDELMMDVDTTKLSTIISNLLSNAIKF 977

Query: 702  SSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
            +     ++L    +N    I  V + G+ I +D    +FNRF         +R G G+GL
Sbjct: 978  TPALGKIVLHLHNENNTHLIIKVSDTGTGISKDELPHIFNRFYQADSTVTRKRDGTGIGL 1037

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            ++ +  +NL GG +S++++ +  +     +P  +
Sbjct: 1038 ALTKELVNLLGGEISVTTAVDEGSVFKVILPITQ 1071


>gi|109898070|ref|YP_661325.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700351|gb|ABG40271.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 660

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/499 (18%), Positives = 198/499 (39%), Gaps = 26/499 (5%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--LAFLA--TNPSNDELLEF 358
             L  +  +L +    + I+     +QF+N ++      +   + L         E+   
Sbjct: 42  QSLKTSVRLLLSSGHPMFIWWGEHLIQFYNDAYASTLGPERHPSALGQQGRDCWAEIWPE 101

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           +    +        TW EN       +   ++ +   +   +    ++N  GG + +   
Sbjct: 102 IAPQMEQVLTGKGHTWHENQRLFITRNGVREEMYWTYSYSPIDDPNSANGIGGVLVVCNE 161

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPG 477
            T QV  E    T         D     + +  GP+ R + +N  +  L   ++      
Sbjct: 162 TTEQVLAEHAMKTAEARWRSLFDQAPSFMCIVQGPEHRFEYANLNYFKLLGKQDF----- 216

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPL 533
                +         E D     A +   F+         + L+  +     +++   P+
Sbjct: 217 -----LGEKVIDVVPEVDAQGFIALLDKVFESGESHHGIEMPLVVGNGAPIYIDFIYQPI 271

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            NA   ++ + V  +   ER     N +L++ D++K+ F+  +++ELR+PL  I   +++
Sbjct: 272 MNASGHVSGILVEGNNVTER--VMANRSLQEQDKLKDEFLAMLAHELRNPLAPIRNVSEI 329

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L    +   + K     + ++     + +L++D+LD++ +   ++ L       +D+++ 
Sbjct: 330 LLN--MEQRDPKLKNIGDILARQVRHMTHLMDDLLDVSRISQNLINLQLEPTNFSDIVDL 387

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +S  + +      ++V+   +      D  RL+Q  S +L+NA+ ++ +G  + L+  
Sbjct: 388 TIESQQSALDTKQHTLEVVDTPQDLYVNGDSTRLVQSLSNVLNNAIKYTPEGGHITLECV 447

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            D       + +NG  I   M   VF  F  V       + G+G+GL+IV+  + +HGG 
Sbjct: 448 ADIETVQVIISDNGYGICPSMQGKVFELFAQVQQTLDRSQGGLGIGLNIVQRLVQMHGGS 507

Query: 772 VSISSSD-EGVTTINCRIP 789
           +S+SS      +     +P
Sbjct: 508 ISVSSQGLGHGSCFTITLP 526


>gi|229524361|ref|ZP_04413766.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           bv. albensis VL426]
 gi|229337942|gb|EEO02959.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           bv. albensis VL426]
          Length = 785

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|261406783|ref|YP_003243024.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
 gi|261283246|gb|ACX65217.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
          Length = 1017

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 4/246 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             S RA   +   +E L   D++K+ F+   S+ELR+PL  IIG  D L     G L S 
Sbjct: 377 MKSSRAFFQVERLSERLLTLDKLKDEFLAKTSHELRTPLHGIIGLADALIDGSSGKLPSP 436

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +  +  S   L +LVNDILD + +    + L   T+ L   +    Q +     + 
Sbjct: 437 VIDLLRLMKVSGQRLAHLVNDILDFSKLKHQEIGLVLVTVNLRLAVELTLQVLNPLAEKK 496

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +R+       +   +AD  RL QI   ++ NA+ ++  G TV + A R  G     + +
Sbjct: 497 GLRLSHQLPDDM-YVMADENRLQQILHNLIGNAIAYTETG-TVTVTAKRLQGQVSVQITD 554

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I E     +F  F       R Q+ G G+GLSI +  + LHGG + ++S     +T
Sbjct: 555 SGIGISEADLDRIFESFEQINPLDRSQQGGTGIGLSITKKLVELHGGRIGVTSGVGEGST 614

Query: 784 INCRIP 789
            +  +P
Sbjct: 615 FSFTLP 620


>gi|83745642|ref|ZP_00942700.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
 gi|83727719|gb|EAP74839.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
          Length = 668

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 153/376 (40%), Gaps = 20/376 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---SNPAF----RSLWKTEENRLSPGTH 479
           T+     +     +      ++++  D  +      NP F      L       +     
Sbjct: 145 TQQRVSQQRLLAALQASP--ISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRA 202

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +     R         +  A       +R      +  L D   E  II L NA   
Sbjct: 203 ASRLTEAGQRVIATGSPTRVEFAFRRRHT-QRVVYDVVVMPLRDDTGE--IIGLTNAAID 259

Query: 540 LTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +T    T++ R +   A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL   
Sbjct: 260 ITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR 319

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 +   + +E I  S+   ++L++D+LD++ + +G + L    + L D+L   +++
Sbjct: 320 PYD--EAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARET 377

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I     +  I I       +     D  RL Q+F  +L+NA+ F+ +G  + +       
Sbjct: 378 IEPMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPE 436

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH G ++ +
Sbjct: 437 GLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAA 496

Query: 776 SSD-EGVTTINCRIPS 790
           S+     TT+   +P 
Sbjct: 497 SNGANLGTTMAVTLPL 512


>gi|121727517|ref|ZP_01680635.1| sensor histidine kinase FexB [Vibrio cholerae V52]
 gi|147673942|ref|YP_001217872.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           O395]
 gi|262168356|ref|ZP_06036053.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC27]
 gi|121630185|gb|EAX62587.1| sensor histidine kinase FexB [Vibrio cholerae V52]
 gi|146315825|gb|ABQ20364.1| sensor histidine kinase FexB [Vibrio cholerae O395]
 gi|227014264|gb|ACP10474.1| sensor histidine kinase FexB [Vibrio cholerae O395]
 gi|262023248|gb|EEY41952.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC27]
          Length = 785

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|325090376|gb|EGC43686.1| histidine kinase [Ajellomyces capsulatus H88]
          Length = 2345

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ +VS++LR+P+  +IG ++LLK +   +L+ +Q  YV
Sbjct: 1816 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---NLDREQDGYV 1872

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + L + + EV +++     +  ++  
Sbjct: 1873 ESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTI 1932

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFS--V 723
               DG   +   + D  RL QIF  +LSN+  F+ KGS V +KA     D+G    +  V
Sbjct: 1933 EDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGS-VTVKAKAADEDDGRIRITCKV 1991

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I  +    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 1992 ADTGIGISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGV 2051

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2052 GTTVTFTL 2059


>gi|314933845|ref|ZP_07841210.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87]
 gi|313653995|gb|EFS17752.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87]
          Length = 565

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 174/406 (42%), Gaps = 38/406 (9%)

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAV 449
           L +G   HV V  +    T  +F           K N   K+Q      T++++   V +
Sbjct: 184 LADG-YYHVRVPESNVKETRALFVTTNELARRLQKLNNSQKIQSNRLKTTLENIPSSVLM 242

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
               G I ++N A+  ++ + + ++    +I  I  +  +             II SF  
Sbjct: 243 IDKHGEIVVANHAYYEVF-SPDQQVENKNYIGFIDDSIEKL------------IIESFRT 289

Query: 510 ERK---SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           E+     ++  +  +     + S +P+ +         V         +      L+K +
Sbjct: 290 EKVIYDQIEVDINNVHTKYFDVSCVPILSKSKKKLQGMVV--------VLHDITNLQKLE 341

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLV 624
            ++  FV +VS+EL++P+T+I GF + L     G+ N +QS   ++  I   S  + +LV
Sbjct: 342 NLRREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNRIESLV 398

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            D+LDL+ ++    ++  + + L++L      ++ T+    NI I+   +  +    A  
Sbjct: 399 MDLLDLSHIEQ-QTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVI-IEAHE 456

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            ++ Q+ + +LSNA+++S + + VI++  R+       +++ G  I     K +F RF  
Sbjct: 457 NKIAQVITNLLSNAINYSLEDNKVIVRVFREGKKVNLEIQDFGIGISVKDQKHIFERFYR 516

Query: 745 NA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                     G GLGLSI +  +  H G ++I+S     +T     
Sbjct: 517 VDKARSRDSGGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVTF 562


>gi|303248386|ref|ZP_07334646.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490184|gb|EFL50102.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 651

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 161/350 (46%), Gaps = 19/350 (5%)

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII---TSFD 508
            DG +  S    R ++  + NR      +++I     R   ++   DL    I    +F 
Sbjct: 148 SDGTLSTS-EGARRIYGMDPNRHYTLREVQHIPLPQYRPMLDAALTDLVGRRIPYNVTFK 206

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             R      +++ S +  + +     + +   T  +VT   + E  L E  +    A+  
Sbjct: 207 IRRPQDGAVIDINSRASYDST-----DNKIFGTIQDVTAQKQIEADLIESRQRAELANSA 261

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+ ++S+E+R+PL  I+G    L+ +   + +++Q +++     +S  L  L+NDIL
Sbjct: 262 KTEFLANMSHEIRTPLNGILGMLQALEDT---APSAEQQRFIGAAIRASRRLAQLLNDIL 318

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           DL+ ++AG +++      L++L+  +++  +    +  + +   ++ G     + D  R+
Sbjct: 319 DLSRIEAGKIRITPGPFKLSELVASIEELFSYSARKKGLSLSFSVASGIPNDLLGDAVRI 378

Query: 688 LQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI   ++ NA+ F+++GS  +    ++        +F+V + G  IPE +   +   F 
Sbjct: 379 RQILFNLIGNAIKFTNQGSVSLTIEPIRVEEQRIRLLFTVADTGIGIPETLMAHICEPFT 438

Query: 744 SNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                     +GVGLGLSIV+    L  G V++ S +   TT++  +P +
Sbjct: 439 QARPDTLPPTQGVGLGLSIVKKLTRLMNGEVTLESREGHGTTVSLSLPLE 488


>gi|300867045|ref|ZP_07111713.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300334942|emb|CBN56879.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1122

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 19/255 (7%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL ++NE L+  D++KN F+ + S+ELR+PL  IIG  + L     G L       +  I
Sbjct: 417 ALEKQNEDLKDLDKLKNEFLANTSHELRTPLNGIIGIAESLIDGATGELPQSTQANLTLI 476

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           ++S   L NLVNDILD + +    ++L    + L  + N V         + ++++    
Sbjct: 477 ASSGRRLANLVNDILDFSKLRHNNLELRLKPLDLRAVTNVVLTLSQPLAAQKDLQLINAI 536

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----------------RDNG 717
                   AD  RL QI   ++ NA+ F+  G TV + A                   N 
Sbjct: 537 AADFPPAAADEDRLQQILHNLVGNAIKFTPIG-TVTVSAEVVIGSEQLPITDSQLSTANY 595

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               +V + G  IP D    +F  F         +  G GLGL++ +  + LHGG +++ 
Sbjct: 596 QLAITVSDTGIGIPADKFDRIFESFEQAEGSTAREYGGTGLGLAVTKQLVELHGGKINVK 655

Query: 776 SSDEGVTTINCRIPS 790
           S     +     +P+
Sbjct: 656 SQLGVGSQFTFTLPA 670


>gi|253689753|ref|YP_003018943.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756331|gb|ACT14407.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 931

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 12/246 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LN+ Q+ Y+  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTPLNTTQTDYLLTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++ND+LD + ++AG + L      L++ L++V   +A   HE  + + +  
Sbjct: 335 ERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNALDDVVMLLAHTAHEKGLELTLSI 394

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
              +   FV D  R+ QI + +L NA+ F+ +G+  + ++  R           +++ G 
Sbjct: 395 QNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF 514

Query: 787 --RIPS 790
              +P 
Sbjct: 515 HITLPL 520


>gi|269838421|ref|YP_003320649.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787684|gb|ACZ39827.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 788

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 107/600 (17%), Positives = 224/600 (37%), Gaps = 58/600 (9%)

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
              F  A  E   L    I+   I     E     T++            V  +     +
Sbjct: 199 DDTFSAAFQEDALLRSLGIRSYAIYPLRGEHGILGTINLSSRTPAAFSDRVLAVIERVAS 258

Query: 290 GIAIDVSKE---ITVNDQLTHTYEILHNLTVAIAIFDQ--NRYLQFHNRSFV-------- 336
            +A+ V K     +         ++L  +   + +     +  +   N+ +         
Sbjct: 259 HVALAVEKILLLESTERHRVFLEQVLQYVPAGVIVVGPPPDLRVLTVNKHYRGFLDEPYR 318

Query: 337 ---ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
              +L  + L  +  N         L       E +     ++ ++   +    H D+W+
Sbjct: 319 SEKDLVGLPLRTIIPNLDEVGFGAALAKVFTTGETVEV---RDVVYEGLERGTIHLDSWY 375

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK-------VQGETIDHLSEG 446
           +P      +          I +  + T +V  + +   L K            I+ + EG
Sbjct: 376 VP------LRDRLGRVEAVIGLVTDTTERVRYQRRIEELAKSAAQQATALSTIIESMVEG 429

Query: 447 VAVFGPDGRIKLSNPAFRSLWK-TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           V V    GR+ L N A   L+  T E  L P       +   +RY +          +  
Sbjct: 430 VYVCDGTGRVVLVNEAGARLFGITTEQALQPLAKYAEFSQ--ARYPDGRPIPTEEMPLAR 487

Query: 506 SFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
               E  +    +   +D+     L ++  P+ + +  +             A+      
Sbjct: 488 GLRGETSADWEQIVRRADTGEDIHLRFAYSPIVDDRGTIVGAV---------AVANDMTR 538

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS--KLGSLNSKQSQY-VEYISASST 618
            R+ +  +  F+   ++EL++P+T++  FT  +  +  + G+L  ++++  ++ I +   
Sbjct: 539 TRQLERQREEFLSIAAHELKTPVTSVKLFTQGMLRTLQRRGTLAPERAERDLQTILSQID 598

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-IRIKVISDGKL 677
            L  LV+D+LD++ V  G ++ ++ T+ L  L+  V      ++ E++   +++I+   L
Sbjct: 599 RLTRLVDDLLDVSRVRTGRLEYHFETVDLIALVEAVVDRFRRQIDEDDRYELRLIAAPDL 658

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMC 735
            + V D  R+ Q+ + +LSNA+ +S  G T+ ++     ++G     V + G  +     
Sbjct: 659 PATVVDPHRIDQVLTNLLSNAIKYSPTGGTISVQVGPGAESGWIRIEVSDPGVGLDPPEI 718

Query: 736 KSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPSK 791
             +F  F   A     R   G+GLGL I  + +  HGG +   S  +G  +T    +P +
Sbjct: 719 AGLFEPFARAAGNTTVRNISGIGLGLYISRAIVERHGGLIWAESEGQGCGSTFIVELPVR 778



 Score = 41.1 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 28/216 (12%)

Query: 127 LSKATEKLRKEGQS---FDLVAETQNDCAIKIEG-------RVSGSCAFLRILSLDGIYS 176
              A  K+   G++    D+V E      I ++        R+    A + +++      
Sbjct: 340 FGAALAKVFTTGETVEVRDVVYEGLERGTIHLDSWYVPLRDRLGRVEAVIGLVTDTTERV 399

Query: 177 E-LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE------ 229
                     K  +   +    + +S+   V+  D  G ++  N +  +           
Sbjct: 400 RYQRRIEELAKSAAQQATALSTIIESMVEGVYVCDGTGRVVLVNEAGARLFGITTEQALQ 459

Query: 230 -----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------ 278
                    Q    + R +  EE+            ++ + V   + G +   +      
Sbjct: 460 PLAKYAEFSQARYPDGRPIPTEEMPLARGLRGETSADWEQIVRRADTGEDIHLRFAYSPI 519

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
           +       G   +A D+++   +  Q      I  +
Sbjct: 520 VDDRGTIVGAVAVANDMTRTRQLERQREEFLSIAAH 555


>gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
 gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
          Length = 948

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 126/693 (18%), Positives = 252/693 (36%), Gaps = 70/693 (10%)

Query: 126 KLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC 185
            L++   ++R+E   F +    Q    I+   R S     L+ ++ + + +E     ++ 
Sbjct: 40  ALNQKEAEIRQE---FSIS-SDQAQRYIQ---RTSDVMKELKYIAENRLTAENGIMAIRG 92

Query: 186 KKLSNHISVFKVLFDSLDFLV----WHRDQAGDILWANISYKKNTETEGIVFQKAI--GE 239
           +K    +  F+ LF   D       W R     + W    ++ N      + +  +   E
Sbjct: 93  RKDKTEVPNFEPLFPDSDCSAMGNTW-RGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSE 151

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETV-----STLEHGNNKSYKIVRVLNSFGEAGIAID 294
           +  +    ++   +      K+  E +     +  E   N  + I +          A+ 
Sbjct: 152 NLCMADFGLRDMPVERDDALKSLHERIVKYRNAPQEERGNNIFWISQGPRMGVGYFYALT 211

Query: 295 VSKEITVNDQLTHTYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
                     L  T + +         +L + + I D+N +            +ID  ++
Sbjct: 212 PVYLANRLQALLGTEQTIRMENFFTPGSLPMGVTILDENGHTLISLTGPESRLKIDPHWM 271

Query: 347 ATNPSND--ELLEFLRSANKLPEQ---LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
                         L     LP     + +    + +    +    +    ++  G  L 
Sbjct: 272 QERSWFGYTSGFRELVLKKSLPPSSLSIVYSVPVDMVLERIRILILNAILLNVLVGVALF 331

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSN 460
           ++     R   I    +         +     +   + +     G+ +    DG   LSN
Sbjct: 332 MLARMYERRIFIPAESD-------AQRLEEHEQFNRKIVASAPVGICILRTQDGTNILSN 384

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                L     N L+     R     C +  N       F  ++TS      +LQ +   
Sbjct: 385 ----ELAHNYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTSTH---TNLQISFVH 430

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                   +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+EL
Sbjct: 431 SRYRNENVAI---------CVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHEL 481

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD + +++  +K+
Sbjct: 482 RTPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKI 538

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
                   +++N +  +    +    + +    +  +  +   D  RL Q+ S +LSNA+
Sbjct: 539 EPREFSPREVMNHISANYMPLVVRKQLGLYCFIEPDVPLTLHGDPMRLQQVISNLLSNAI 598

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
            F+  G  ++L            V++ G  IP      +F+ F       +   +G GLG
Sbjct: 599 KFTDTG-CIVLHVCLVGDYLTIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLG 657

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I E  I++  G +S+ +     +    RIP 
Sbjct: 658 LAICEKLISMMDGDISVDTEPGMGSQFTIRIPL 690


>gi|167582935|ref|ZP_02375809.1| multi-sensor hybrid histidine kinase [Burkholderia thailandensis
           TXDOH]
          Length = 986

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 103/607 (16%), Positives = 204/607 (33%), Gaps = 49/607 (8%)

Query: 205 LVWHRDQAGDILW-----ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALE 259
            V+     G  +       + +     +   +  Q                         
Sbjct: 145 AVYMIGADGRFVALSLHVISRAALPLAQVAQLPEQLPRAWPDVAAMVRAAAVDPKHVPDG 204

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID-VSKEITVNDQLTHTYEILHNLTV- 317
             +      +  G  +             A  A+D   + I +  Q      +L+ L   
Sbjct: 205 VIWLPPREGVITGEQRMR----------IASWALDGRGRPIVLMVQTMRPERLLNALDDD 254

Query: 318 ----AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL---EFLRSANKLPEQLN 370
               A A+ D+   +        ++  +  A       + E L         + +PE  +
Sbjct: 255 SRGGAFAVVDRTGNILLSVSPRADVTNLARALAGARVDHIEQLFRDGRFVIRDAIPET-D 313

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           W      ++S+               G  L         G  +     LT       +  
Sbjct: 314 WTLLY--VYSIRTMMYDVAARMCKILGVALFGFAF-LWWGIVLVHRRVLTPSYVRALRLQ 370

Query: 431 TLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              ++    I     G+A+ G  DG + L N A                  + +A     
Sbjct: 371 ESEQLNRTLIRTAPIGLALIGEADGTVLLRNKAMARYETGSSGEPLSQRLWQALAHVPDE 430

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVT 546
           +           A   +      +L G      ++ L  ++  +        + T  ++T
Sbjct: 431 HAP---------ARRRAIVGHEVALAGVNGAAGETYLLVNVAHVKYRGAQALLATVNDIT 481

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
               AE++L E   A  +A+  K+ F+  +S+E+R+PL  +IG  +L+K    G L   Q
Sbjct: 482 ARKLAEQSLDEARRAADQANRSKSVFLATMSHEIRTPLNALIGNLELMKR---GPLADAQ 538

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E ++++S+ LL+++ND+LDL+ V+AG ++++        LL +V  +         
Sbjct: 539 RRRLEIVASTSSALLHILNDVLDLSKVEAGQLRIDAVPFDCAVLLRDVTATFQPLATAKG 598

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +       +    + D  R+ QI + +L NA+ F+  GS  +  A   +      V +
Sbjct: 599 LHLGCDIAPDMAPLRIGDPIRIRQIVANLLGNAIKFTDTGSVTLFAAG--DDVIELRVVD 656

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I      ++F  +         +  G GLGL++    +N  GG ++  S     + 
Sbjct: 657 TGIGISPQAVATIFELYKQADDSIHRKYGGTGLGLALCRRLVNAMGGEIAARSVPGEGSE 716

Query: 784 INCRIPS 790
               IP 
Sbjct: 717 FRVGIPL 723



 Score = 40.7 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 52/176 (29%), Gaps = 4/176 (2%)

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHR 209
              KI G      AFL    +      L  + ++  +L     + + L  +    L    
Sbjct: 332 RMCKILGVALFGFAFLWWGIVLVHRRVLTPSYVRALRLQESEQLNRTLIRTAPIGLALIG 391

Query: 210 DQAGDILWANISYKK-NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           +  G +L  N +  +  T + G    + + ++     +E       +    +     V+ 
Sbjct: 392 EADGTVLLRNKAMARYETGSSGEPLSQRLWQALAHVPDEHAPARRRAIVGHEVALAGVNG 451

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                     +  V     +A +A   D++        L            + ++F
Sbjct: 452 AAGETYLLVNVAHVKYRGAQALLATVNDITARKLAEQSLDEARRAADQANRSKSVF 507


>gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|110801193|ref|YP_695689.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|110675840|gb|ABG84827.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
          Length = 623

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 94/507 (18%), Positives = 202/507 (39%), Gaps = 31/507 (6%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           EI +  +       L +LT  +   D +      N++F     I+  ++      D   +
Sbjct: 103 EINLKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKVGIEKKYIIGKTDKDIFFD 162

Query: 358 FLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRG 410
                   P ++    KT +E I S  K     +  +   +G     + +      N   
Sbjct: 163 -------DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVK 215

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I +  +++ +  +E +     K+  E  ++L + V +     +    N AF  L+   
Sbjct: 216 GIIGLTRDISYKKAIEYRLKKNDKMFFEVFNYLDD-VVIIKEGEKTIYVNHAFEKLYGLN 274

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L        +     R + E D +        +F  E+  +      + + +   + 
Sbjct: 275 CKELYKEKS---MIVKLDRIHPE-DRYKFSNIDFGNFFMEKARIVRADNEVRNVLFRANS 330

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           I   N +++   + + D       +T+  E   + ++++  F  ++S+E ++P+  I   
Sbjct: 331 IKNENGESIRRIIVIND-------ITDTIEKSNEMEKLRVEFFANISHEFKTPVNLIYSA 383

Query: 591 TDLLKTSKLGSLNSKQSQYVEYIS---ASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             LL+     +++  +  Y+ YI     +   LL L+N+++D   ++AG   +N     +
Sbjct: 384 LQLLELKLKNNIDRNEESYINYIKMAKQNVFRLLKLINNLIDSTKLEAGFFNVNIKNHDI 443

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              + ++  SI     +N I I   ++ +      D   L +I   ILSNA+ F+ +   
Sbjct: 444 VSCVEDITMSICGFAEKNKISITFDTEEEEKIIAFDLNHLERILLNILSNAIKFNRENGN 503

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           + +  + D      S+K+ G  I +D    +F+RF    +R  +   G G+GL I +  +
Sbjct: 504 IDVYMSFDERYANISIKDTGIGIQKDKIDLLFHRFKKINNRLTKVNEGSGIGLFIAKELV 563

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            ++GG + ++S     T    ++P K+
Sbjct: 564 KINGGEMRVNSELGEGTEFIIKLPIKK 590



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 100/282 (35%), Gaps = 42/282 (14%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L     +  +  DSL   V+ +D  G  +  N +++      GI  +  IG++ K    +
Sbjct: 106 LKKEKDMLDLFLDSLTDYVFFKDIDGRYINCNKAFENKV---GIEKKYIIGKTDKDIFFD 162

Query: 248 IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------------GEAGIAI 293
              ++ +    ++    +     +G    ++                      G  G+  
Sbjct: 163 DPSKVETFIKTDREVINSREKKVYGEEWGFECEDGYLEETVKSPYFDENNEVKGIIGLTR 222

Query: 294 DVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+S +  +  +L       +E+ + L   + I  +     + N +F +L+ ++   L   
Sbjct: 223 DISYKKAIEYRLKKNDKMFFEVFNYLDD-VVIIKEGEKTIYVNHAFEKLYGLNCKELYKE 281

Query: 350 PSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLP------NGQTLHV 402
            S    L+ +   ++     +++  +      + ++    ++           NG+++  
Sbjct: 282 KSMIVKLDRIHPEDRYKFSNIDFGNFFMEKARIVRADNEVRNVLFRANSIKNENGESIR- 340

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                     I +  ++T  ++   K N + K++ E   ++S
Sbjct: 341 ---------RIIVINDITDTIE---KSNEMEKLRVEFFANIS 370


>gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|86146520|ref|ZP_01064843.1| sensor histidine kinase [Vibrio sp. MED222]
 gi|85835783|gb|EAQ53918.1| sensor histidine kinase [Vibrio sp. MED222]
          Length = 818

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 124/240 (51%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + +   K +F+  +S+E+R+P+  ++G   +L  +    L+++Q ++++ + 
Sbjct: 329 LEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLSTEQEKHLKSLY 385

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G + L+ +   L+ ++  +     T   E  ++ KV S+
Sbjct: 386 DSGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVYYTLSSEKGLQFKVYSE 445

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSI 730
              G +  +D+ RL QI   +L+NA+ F+S+G   V LK   +  D      V++ G  I
Sbjct: 446 VPSGRWYFSDKARLRQILFNLLNNAVKFTSRGFVEVYLKEVVEGSDTYLSIRVRDTGIGI 505

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  K +F  F        RR  G GLGL+IV+    L  G +S++S +   T+ + R+
Sbjct: 506 SKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMEGSISVTSEEGIGTSFDVRL 565


>gi|256419372|ref|YP_003120025.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256034280|gb|ACU57824.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 2037

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 127/258 (49%), Gaps = 18/258 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A R+L EK E L+   + K+ F+ ++S+ELR+PL +++     L  +  G+LN KQ +Y 
Sbjct: 1326 ARRSLEEKAEQLQLTSKYKSEFLANMSHELRTPLNSLLILAQQLYENHDGNLNEKQVRYA 1385

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I +    L+ L+NDILDL+ +++G +  ++  +  N++++ V+ +        ++R +
Sbjct: 1386 KTIHSCGDDLIQLINDILDLSKIESGYISTDFIKVRFNEVVSFVETTFKHISESKSLRFR 1445

Query: 671  VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------- 720
            +  D +L  S   D QRL QI   +LSNA  F+ KG  V L+      ++          
Sbjct: 1446 IEMDEQLPQSLETDVQRLNQILKNLLSNAFKFTEKGE-VKLRIYEAKRNWRLMNGSLDSA 1504

Query: 721  -----FSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 F +++ G  I +D    +F  F     +   +  G GLGLSI     +L GG + 
Sbjct: 1505 DRVVAFEIRDTGIGISKDKQNIIFEAFQQAEGSTSRKYGGTGLGLSISRGLADLLGGSIE 1564

Query: 774  ISSSDEGVTTINCRIPSK 791
            + S     +     +P +
Sbjct: 1565 LESEVGRGSIFTLFLPLQ 1582


>gi|221210070|ref|ZP_03583051.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221170758|gb|EEE03224.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 688

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 146/366 (39%), Gaps = 13/366 (3%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D   + +       RI   N A + ++  +   +         A    R     
Sbjct: 171 LLRRVVDASPDAIVGVDGARRIVSWNHAAQRIFGADAATMIGRDVTTLFAPRWLRRQPVP 230

Query: 495 DGWDLFAAIITSFDD--ERKSLQGTLELLSDSVL-----EYSIIPLPNAQTMLTFVNVTD 547
              D   A +   D    R+         + S +         + +   +      +   
Sbjct: 231 ASIDEVHAPVGPIDVLCMRQDAHCFRATFAASPIVDANGHVDGLSMTLREARERRRDERR 290

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              + R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L++           
Sbjct: 291 DHLSLRGARDARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSVDGQGF---AQ 347

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q V+ I  S+  L  +V D+LD +++  G ++L  + + +  ++++  +      H   I
Sbjct: 348 QAVDAIDRSARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGI 407

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +     G      AD +RL Q+ S +LSNA+ F+  G  +++  AR +     SV + G
Sbjct: 408 TLVTEGAGTACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVSLSVADTG 467

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
             +  +    +F+ F    NA    +RG+GLGLSIV +   LHGG V  +S       T+
Sbjct: 468 QGMAPEALPHLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTV 527

Query: 785 NCRIPS 790
              +P+
Sbjct: 528 TVTLPA 533


>gi|262190201|ref|ZP_06048478.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT
           5369-93]
 gi|262033921|gb|EEY52384.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT
           5369-93]
          Length = 857

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 157/383 (40%), Gaps = 34/383 (8%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +               
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--------------- 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
           I+ +      ++            IT           T E+    V  +++ P+    Q 
Sbjct: 388 IQFLREDAQNHFLFEILERQLLPTITKAAQGNNPSDVTTEV-DGRVYRWNLSPIMVEGQI 446

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK
Sbjct: 447 ISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLK 506

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + 
Sbjct: 507 RT---PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAID 563

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++   
Sbjct: 564 RIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQL 622

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             GD     +  V + G  I E     +F  F+       R   G GLGL+IV S + + 
Sbjct: 623 IEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEML 682

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G + +SS     T    ++P +
Sbjct: 683 SGQLHVSSEYGIGTRFEIQLPIE 705


>gi|186683853|ref|YP_001867049.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186466305|gb|ACC82106.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 648

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 162/393 (41%), Gaps = 29/393 (7%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   ++ L    ++G  +   + ++ L NP  R
Sbjct: 247 GELILSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQVILVNPTAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++   E     G ++ +      +       +++ A    S +      Q T   +   
Sbjct: 307 RIFG-WETADVVGCNVLHHLPPAVQMEITGPLYEMAAGECESAEFRIFINQPTPRTI--R 363

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +L  +++ +         + V D  R             + ++ K+ F+ +VS+ELR+PL
Sbjct: 364 ILLTTVLNVQRESIKGIAITVQDITR-----------EVELNDAKSQFISNVSHELRTPL 412

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  + + L          ++ ++++ ++  +  L  LVND+LDL+ +++G  + N+  
Sbjct: 413 FNIKTYIETLHDYGEDLGLEERQEFLQTVNHETDRLTRLVNDVLDLSKLESGR-QYNFDG 471

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L   + +  ++      +  + +    D  L   + +   L+Q+F  ++ NA+ F+  
Sbjct: 472 VDLAQAIEQTLRTYQLNAKDKGVELLQEVDTNLPLVMGNYDLLVQVFGNLIGNALKFTKA 531

Query: 705 GSTVILKAAR--------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVG 755
           G  V ++A +         +      + + G  I  +   S+F RF    +R     G G
Sbjct: 532 GGKVAIRAYQLDFKPNHSQSSPVRIEISDTGIGIATEDQHSIFERFFRVENRVHTLEGTG 591

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGLSIV + I+ H   V + S     TT    +
Sbjct: 592 LGLSIVRNIIDRHRSKVHLVSEVGIGTTFWFDL 624


>gi|313617213|gb|EFR89705.1| alkaline phosphatase synthesis sensor protein PhoR [Listeria
           innocua FSL S4-378]
          Length = 254

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 4/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L      +R  + +++ FV +VS+EL++P+T + GF + L    +        +++  I 
Sbjct: 15  LLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYD-EMLLKKFLTIIK 73

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L  L+ DIL L+ ++   +  N   + +++++ +  ++I     E NI++ V   
Sbjct: 74  EESDRLHRLIMDILALSRIEQNPVAENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEK 133

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                 +  DR +L QI   +LSNA++++     V +K      + I  V +NG  IP  
Sbjct: 134 TIPPIIIETDRDKLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAK 193

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               VF RF            G GLGLSIV+  +   GG + + S +E  +T    +P K
Sbjct: 194 DIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPKK 253


>gi|256379099|ref|YP_003102759.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
 gi|255923402|gb|ACU38913.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
          Length = 1479

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 4/240 (1%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L ++   L  A + K+ F+ ++S+ELR+PL +++    LL  +  G+LN KQ ++   I
Sbjct: 1073 ELEDRARQLSSASKYKSEFMANMSHELRTPLNSLLILAKLLTDNLDGNLNPKQVEFARTI 1132

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S T LL L++DILDL  V++G M++    + ++D++  V+        E  +   V  
Sbjct: 1133 HSSGTDLLQLIDDILDLTKVESGHMQVQTDPVRVSDVVGYVESLTLPLAAEKGLGFDVSV 1192

Query: 674  DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               +  +   D  RL QI   +LSNA+ F+ +G  + L+         F V++ G  IP 
Sbjct: 1193 QPDVPSTLHTDEHRLQQILRNLLSNAVKFTHEGE-IRLRIRTAGPSVAFDVQDTGIGIPA 1251

Query: 733  DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +    +F  F         +  G GLGLSI      L  G + + S     +T    +P 
Sbjct: 1252 EKLSVIFEAFQQADGTTSRKYGGTGLGLSISRELSALLEGRLDVRSEPGFGSTFTLYLPL 1311


>gi|83646635|ref|YP_435070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634678|gb|ABC30645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 659

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 136/310 (43%), Gaps = 24/310 (7%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTE 557
           L   +  S  +  + L   +EL+ +         +   +      ++     A E+A  E
Sbjct: 187 LIRNMARSIANPIEQLTAGVELIKNGDYRTRAPDIRGLELSRLRNSINQLAVALEKASVE 246

Query: 558 KNEALRKAD----------EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           + E L   +          + K+ F+  +S+ELR+P+  ++G   LL+ ++    + +Q 
Sbjct: 247 QTEHLGMIETARNEAESASKAKSEFLAIMSHELRTPMNGVLGMLQLLQETQQ---DEEQK 303

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y      S+  L+ +++DILD + ++ G + ++     L  L+ E   +   ++ E  +
Sbjct: 304 EYTHVAMRSTEHLIAIIDDILDFSKIERGRLSIDPIEFNLRALVEETLNAFRPQVEEKGL 363

Query: 668 RIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIF- 721
            +    +G+L      AD  R+ Q+ + +++NA+ F+++G  + + A  +        F 
Sbjct: 364 LLHQEYEGELQDALVTADPARIRQVLANLINNAIKFTAEG-YIRVHANWEEIGADKVCFT 422

Query: 722 -SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V+++G  I  +  + +F+ F      +  +  G GLGL+I +  + L  G + + S  
Sbjct: 423 CEVEDSGIGIAPEQQRRMFSSFQQADQSNSRRYGGTGLGLAIAKRLLELMEGEIFVESES 482

Query: 779 EGVTTINCRI 788
              +     +
Sbjct: 483 GKGSCFKFAL 492


>gi|163847332|ref|YP_001635376.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525178|ref|YP_002569649.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668621|gb|ABY34987.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449057|gb|ACM53323.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 917

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 5/258 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT      + +  R E+ L +  +A   A   K++F+  +S+ELR+PLT IIG++ LL+ 
Sbjct: 364 QTANLKAEIQERRRVEQELIKARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLLEQ 423

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                +    +  V  I A+ T LL L+NDILD++ ++AG M ++     + DL+     
Sbjct: 424 LVSKGIYDTVAHDVGRIRAAGTHLLALINDILDISKIEAGRMTVSVEYADVADLVRSAVN 483

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +I  ++ +N  R+ V     +G   +D  ++ Q    +LSNA  F+  G   +  +    
Sbjct: 484 TIIPQIEKNRNRLHVHCPPDIGILNSDATKVRQALINLLSNAAKFTEDGEVTLTVSRYQK 543

Query: 717 GD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
                F F V + G  IP D    +F  F         +  G GLGL++ +    L GG 
Sbjct: 544 DHQTWFRFVVADTGIGIPADKHDKLFKAFSQVDDSPTRKYGGTGLGLALSQRLCELIGGR 603

Query: 772 VSISSSDEGVTTINCRIP 789
           +++ S+    +T    IP
Sbjct: 604 ITMESAVGVGSTFTMEIP 621


>gi|317128714|ref|YP_004094996.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473662|gb|ADU30265.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 483

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 5/246 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R    L          ++ +N F+ ++S+ELR+PLT + GF + L+   +    S+Q  
Sbjct: 234 NRMAEKLNTIENERGTLEKRRNDFIANISHELRTPLTAMKGFLEALQDGLVKDTESQQKY 293

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y   +   +  L +LVND++DL  ++   + L+   + L +++ +V  ++   +   N  
Sbjct: 294 YA-IMYRETEYLNHLVNDLMDLIKLERQDISLDLYCVHLQEIIRKVALNLQPSIESRNND 352

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNG 727
           I + +   +   + D  RL QIF  I+ NA  F+  GS + +K       +    + +NG
Sbjct: 353 IIIDAPDNIPPVIGDSIRLEQIFKNIIHNANKFTENGS-ITIKLEEHCKDNVCVKISDNG 411

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP    K ++ RF       Q+  RG GLGL+IV+  + LH G +++ S     TT  
Sbjct: 412 IGIPSYDVKRIWERFFKVDRVRQKKERGTGLGLAIVKELVQLHHGEITVESELGVGTTFT 471

Query: 786 CRIPSK 791
              P++
Sbjct: 472 IFFPTQ 477


>gi|228984189|ref|ZP_04144371.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775476|gb|EEM23860.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 883

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 139/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 465 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 584

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-------STVILKAARD-----NG 717
           V  SD     F  D +R+ QI   +LSNA  F+ KG       S      + D       
Sbjct: 585 VEDSDMIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 705 SHVGEGSTFTVYIP 718


>gi|70733602|ref|YP_257242.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens
           Pf-5]
 gi|68347901|gb|AAY95507.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens
           Pf-5]
          Length = 594

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 150/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    GR++  NP  +     ++ RL  G               
Sbjct: 256 QQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDQERLGQG---------LGSALQ 306

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++   + ER      +E+  +  +L YS+ P+ + Q  +    +      
Sbjct: 307 RPELDEQLQLVLRGGNLERAPDDLDIEVDGESRLLTYSLTPVSHTQGHILGAVMVLHDVT 366

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+        S+++  + 
Sbjct: 367 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFPEESRETDLLN 417

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   L +LL + +   + +  +  I + +
Sbjct: 418 TVNEEMQRLMQLINDLLNFSRYQNGLQKLTLAPCPLEELLVQAQGRFSEQAQQQGIDLLL 477

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                L    ADR +L ++   ++ NA+  ++    + L+A R     I SV++NG  I 
Sbjct: 478 EIQAPLPRLHADRAQLERVLDNLIDNALRHTASEGQIRLQARRHGERVIVSVEDNGEGIA 537

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 538 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYLALPL 594


>gi|171909890|ref|ZP_02925360.1| two-component hybrid sensor and regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 836

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 14/233 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K  F+ ++S+E+R+P+  IIG T LL  S    L+++Q + V  I  S   LL+L+NDI
Sbjct: 310 AKADFLANMSHEIRTPMNGIIGTTSLLLDS---PLDNEQMELVRMIRTSGESLLHLINDI 366

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           LD + +++  M L    + L  L +E     A K  E  + +       +      D QR
Sbjct: 367 LDFSKLESARMVLERLPVSLERLFHETMGIFAFKAAEKGVELNYHVSENIPRHITGDFQR 426

Query: 687 LLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGD---FIFSVKNNGSSIPEDMCKSV 738
           L Q+   +++NA+ F+ +G  +     I++   D  +      SV++ G  I +D    +
Sbjct: 427 LKQVLVNLVANAVKFTERGEILVVAQPIVRKLPDGSEYTLLQVSVRDTGIGIAKDKLPLL 486

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F        R   G GLGL+I      L GG +S++S   G +     +P
Sbjct: 487 FQAFTQADTSTTRKYGGTGLGLAICRKLCRLMGGEISVTSELGGGSNFFFEVP 539


>gi|126657454|ref|ZP_01728610.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
 gi|126621158|gb|EAZ91871.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
          Length = 569

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+          +Q +++E 
Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLILDGMADDA-QEQQEFLEE 364

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-- 670
              S+  LLNL+NDILD+A ++AG M L   ++ L +L   V      +    ++  +  
Sbjct: 365 AHKSALHLLNLINDILDIAKIEAGKMDLELGSVELAELFQAVDNFTLPQAQRKHLAFRSK 424

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAARDN--GDFI 720
           + S         + QRLLQ+   ++SNA+ F+ +GS V+        +K       G   
Sbjct: 425 LPSTLTPIMVYGNYQRLLQVMFNLVSNAIKFTHEGSIVVNAEIVKKKIKYQDQEFPGLVK 484

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  D    +F +FV           G GLGL+I +  +   GG V   S  
Sbjct: 485 VSVTDTGIGVSLDQQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLVQAMGGQVEFYSMG 544

Query: 779 EG-VTTINCRIPSKE 792
           EG  +T+   +P ++
Sbjct: 545 EGLGSTVTFTVPLEQ 559


>gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +    + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPENVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|120556772|ref|YP_961123.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326621|gb|ABM20936.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 1127

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 5/254 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R ++AL +  E    A+  K+ ++  +S+ELRSPL  I+G+  L++ 
Sbjct: 642 QTRLLTEEIVAHERTDQALQQAKEQAEAANGAKSRYLTGISHELRSPLNAILGYAQLMEN 701

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               S+   + + +  I  S   L +L+  +LD++ ++AG + L+   + +  L+ ++  
Sbjct: 702 D--DSVPPHRKEALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDQVRIGLLMEQLVT 759

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  E  +         L   V  D +RL QI   +LSNA+ ++ +GS V L     
Sbjct: 760 MFRLQAEEKGLAFDYHCPHPLPELVTTDEKRLRQILINLLSNAIKYTDQGS-VSLTLRYR 818

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSI 774
           +    F+V++ G  I  +  + +F  F    + GQ R G GLGL+I      + GG +S+
Sbjct: 819 SQVAEFTVRDTGEGIAAENIERIFRPFERIRNPGQSRTGTGLGLTITRLLTEIMGGDISV 878

Query: 775 SSSDEGVTTINCRI 788
            S     +     +
Sbjct: 879 ESEPGEGSVFKVSL 892


>gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 547

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 140/275 (50%), Gaps = 8/275 (2%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYEL 580
             + E +      A  +       +S  AER   L   N+ L +  + K  F+ ++S+EL
Sbjct: 265 GEIKELTERFTDMAHKLHDIYEQLESKVAERTAELAAANKELAEISQYKTEFLANMSHEL 324

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT I+ FT+ L T  +G LN++Q +Y++ I  S   LLNL+ND+LDL+ +++G M L
Sbjct: 325 RTPLTAILAFTEELLTKSMGQLNAEQEEYLKDIRDSGRQLLNLINDLLDLSKIESGKMAL 384

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N + + + + +  V++ +     + NI ++    G     +AD +++ Q+   +L NA+ 
Sbjct: 385 NLTEVNVGEAVRGVEKLLRPLAQQKNIDMQSAITGT-NVIIADEEKVRQVIRNLLGNAIK 443

Query: 701 FSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVG 755
           F+  G  + L      R +   + +VK++G  IP      +F+ F            G G
Sbjct: 444 FTPAGGRIELYVRDTDRPDEGVLLTVKDSGPGIPAKDRARIFDSFYQGHRGRNKEYGGTG 503

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL++V+  + +H G +++ S++   +     +P+
Sbjct: 504 LGLALVKRIVEMHLGEITLESTEGQGSAFTVYLPA 538


>gi|108757005|ref|YP_628980.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108460885|gb|ABF86070.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 1967

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 155/381 (40%), Gaps = 29/381 (7%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAA 485
              ++T  +V    ++ L+E + +         +N    +L K  +            +  
Sbjct: 1139 ASFHTFSEVHMGFLEQLTESIGIV---LNTIAANMRTEALLKQSQALTDELRKQQEELTE 1195

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            T  R   ++        ++    +E +S    L+  +          L + Q        
Sbjct: 1196 TNKRLEQQATSLQQSEELLKRQQEELRSTNEELQEKAK---------LLSEQKTEVERKN 1246

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             +  +A+ AL EK E L    + K+ F+ ++S+ELR+PL +++  +  L  +  G+L S+
Sbjct: 1247 GEVEQAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDNVDGNLTSR 1306

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q ++ + I AS   LL L+NDILDL+ +++G M ++   +   DL   V ++      + 
Sbjct: 1307 QVEFAKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDRTFRQVADKK 1366

Query: 666  NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------ 718
             +   + + D   G    D +RL Q+   +LSNA  F+  GS  +       G       
Sbjct: 1367 GLEFHIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFTESGSVSLHIGLAKGGWSPDHAM 1426

Query: 719  -------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
                     F+V + G  IP+D  + +F  F         +  G GLGLSI      L G
Sbjct: 1427 LSSAPSVVAFTVADTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREIARLLG 1486

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G + + S     +     +P 
Sbjct: 1487 GEIRLESDVGRGSAFTLYLPL 1507


>gi|90407447|ref|ZP_01215631.1| sensor histidine kinase FexB [Psychromonas sp. CNPT3]
 gi|90311478|gb|EAS39579.1| sensor histidine kinase FexB [Psychromonas sp. CNPT3]
          Length = 751

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/407 (20%), Positives = 165/407 (40%), Gaps = 16/407 (3%)

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-LTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           ++     +    H+ V            EN +  +   + +      +    +D   + V
Sbjct: 83  EEARQRLDNTVEHLQVMLKSDQQKTQALENEIIERQRTQLQLEEGSILLRSFLDTSPDLV 142

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
                 G     N A + +    E ++   T     + + +R   E D       +  + 
Sbjct: 143 FHRDLQGCFVNCNKAMQKISGKTERQMLGLTPFDIYSESYAREVVEYD-----QQVKETE 197

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            ++             +  E    PL N Q     +        ER +    E+L KA  
Sbjct: 198 QEQIHEHWLQYPNGQQAYFEIRSFPLFNTQKKCVGIIGFGRDITERKI--HQESLEKASR 255

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K +F+  +S+ELR+PL  I+G + +L   +   LN++Q ++++ I  S+  L N+ NDI
Sbjct: 256 DKTTFIATISHELRTPLNGIVGLSRMLLDEQ---LNAEQHKHLKTIHMSAITLGNIFNDI 312

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           +DL  +D   + L    I + D + +++     +  +  + +    +G L  ++ AD  R
Sbjct: 313 VDLDKLDRRRLNLVCDQIDMFDFVGDLESLAFIQTEQKGLVLNFEQEGMLPDYIEADDTR 372

Query: 687 LLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF 742
           L Q+   ++SNA+ F+  G  T+   A R N       F V+++G  IP      +F+ +
Sbjct: 373 LRQVLWNLISNAVKFTKTGHITIRCFAKRQNAQHATLCFEVEDSGIGIPAQQLDKIFSMY 432

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                     G G+GL++ +  ++  GG +S+ S+    +T    +P
Sbjct: 433 YQVQGDQHATGTGIGLAVSQQIVDAMGGKLSVKSTFGKGSTFTLSLP 479



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ E      +L     + +   D+   LV+HRD  G  +  N +     +  G  
Sbjct: 109 ALENEIIERQRTQLQLEEGSILLRSFLDTSPDLVFHRDLQGCFVNCNKA---MQKISGKT 165

Query: 233 FQKAIG-ESRKLFKEEIKKRMIS-----SSALEKNFCETVSTLEHGNNKSYKIVRVLN-- 284
            ++ +G     ++ E   + ++          ++   E      +G    ++I       
Sbjct: 166 ERQMLGLTPFDIYSESYAREVVEYDQQVKETEQEQIHEHWLQYPNGQQAYFEIRSFPLFN 225

Query: 285 ----SFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 226 TQKKCVGIIGFGRDITERKIHQESLEK 252


>gi|332527792|ref|ZP_08403830.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112187|gb|EGJ12163.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 1151

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 189/529 (35%), Gaps = 47/529 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP------ 350
           +      + +    I+     AI     +  +   NR    L+    A     P      
Sbjct: 331 QRRQTAIERSRRAAIVERSADAIVGLSLDGVVTDWNRGAENLFGYPAAEALGRPLAALIR 390

Query: 351 ------SNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                  + ELL    +   + P     +     +  V  +     D      G+ + V 
Sbjct: 391 PPGHEAEDAELLRRAAAGEAVEPLDTQRRRRDGRLLDVSIALGPIADE----TGRVVGVA 446

Query: 404 VTSNPRGGTIWMFENLTVQV-----DLETKYNTLVKVQGETIDHLSEGV------AVFGP 452
                 G       +   Q        E    TL   Q + +  LS  +      +V  P
Sbjct: 447 AIVRDSGQRAARLRSAEQQRAVATERAEIAEATLGAAQRDYL-TLSTAITAQSLYSVTDP 505

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +G I  +N  F  +     + L   TH    + T +R +  +    + A      +   +
Sbjct: 506 EGMILDANEHFCRVSGRTRDELRGHTHRVVSSGTHAREFWSALWATITAGRTWQGEICNR 565

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------- 565
           +  G+   +   ++  + +     + +    ++T   +AE+ L   NE L +        
Sbjct: 566 AKDGSRFWVDCVIVPVTGLDGRIVRYLSVGTDITALKQAEQKLELLNEELARRVDQAEAA 625

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K++F+ ++S+E+R+P+  IIG T L+      + ++   + +  +  ++  LL ++N
Sbjct: 626 TRAKSAFLANMSHEIRTPMNAIIGLTHLMAR---DAADTTLRERLHKVDDAARHLLQVIN 682

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL+ ++AG + L       ++L++ V   +        + + + +         D Q
Sbjct: 683 DILDLSKIEAGRLALESVEFSRDELMHRVLGMVTDAAARKGLELVLDTGRLPERLRGDAQ 742

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFN 740
            L Q    +L NA+ F+  G  V L+  R   +       F V++ G  I  +    +F 
Sbjct: 743 HLAQALINLLVNAVKFTDHG-WVRLRGERVAAEDSRVLVRFEVRDTGIGITAERQARLFE 801

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            F        RR  G GLGL++      L GG   + S     ++    
Sbjct: 802 AFEQADTSTTRRYGGTGLGLALTRHLARLMGGDAGVDSVPGQGSSFWFS 850


>gi|253563936|ref|ZP_04841393.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947712|gb|EES87994.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 389

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTFVNVTDSVR---AERALTEKNEALR 563
           E +      E      LE   IP     N + +    ++    R    E  LT   E   
Sbjct: 102 ELRFWAKKREGFVLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAE 161

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+ +K++ + ++++E+R+PL  I+GF  LL    +     +Q +Y+  I +++  LL L
Sbjct: 162 EANRLKSALIANMNHEIRTPLNAIVGFASLLS---IIDDEKEQQEYIGLIQSNTEHLLRL 218

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND++DL+ +++G+M +  S +VL+ L+ E++ +   K   +N+ +    +        D
Sbjct: 219 MNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETDNLVLAWDREQSNAHIYTD 278

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R RL+QI   +L NA+ F++KG+       ++NG   F V + G  IP D  + +F RFV
Sbjct: 279 RDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFV 338

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 Q  G+GLGLS+ +  I    G + + S     +T    IP
Sbjct: 339 KLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|225560357|gb|EEH08639.1| histidine kinase [Ajellomyces capsulatus G186AR]
          Length = 2322

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ +VS++LR+P+  +IG ++LLK +   +L+ +Q  YV
Sbjct: 1790 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---NLDREQDGYV 1846

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + L + + EV +++     +  ++  
Sbjct: 1847 ESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTI 1906

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFS--V 723
               DG   +   + D  RL QIF  +LSN+  F+ KGS V +KA     D+G    +  V
Sbjct: 1907 EDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGS-VTVKAKAADEDDGRIRITCKV 1965

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I  +    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 1966 ADTGIGISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGV 2025

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2026 GTTVTFTL 2033


>gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207747|gb|EFZ92693.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|218902190|ref|YP_002450024.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
 gi|218536450|gb|ACK88848.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
          Length = 896

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N++  
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVKFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDN------G 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS       +      D+       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSDDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WMTISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
 gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
          Length = 767

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E  L         A++ K+ F+ ++S+E+R+P+  +IG   L+  +    L+  Q
Sbjct: 223 ERDEREAELNAAMIKADAANKAKSEFLANMSHEIRTPMNGVIGMAQLMLET---DLSDDQ 279

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y   I +S + L+ ++NDILD + +DAG M L  +   L  +  +    ++ +     
Sbjct: 280 NLYANTIQSSGSALVEIINDILDYSKIDAGKMTLKNAPFDLEQVAQDCSPLMSAQALHKG 339

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFS 722
           + + +     L   ++ D  R+ QI   IL NA+ F+ KGS    V    + D      S
Sbjct: 340 LEVVLDFSQDLPKGYIGDSGRVRQILMNILGNAIKFTEKGSVEFAVNGIQSGDEIALELS 399

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           +K+ G  IP++  +S+F  F        R+  G GLGL+IV   ++L GG +S+ S    
Sbjct: 400 IKDTGIGIPQNKLQSIFVPFEQAEGAKNRQFDGTGLGLAIVNHMVDLMGGSISVESEIGK 459

Query: 781 VTTINCR--IPSKE 792
            +    +  +P  +
Sbjct: 460 GSVFILKIALPIAQ 473


>gi|260777693|ref|ZP_05886586.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605706|gb|EEX31991.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 856

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 161/401 (40%), Gaps = 24/401 (5%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           T+ +   S   G  I  F+ +    +L   + +   K   +  +     + ++  +G++ 
Sbjct: 320 TVEIKDASKFPGSPIEEFDQIGQSFELSFQRLSEQEKQFADLFNFSLSPITLWDVEGKLI 379

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            SNPA    ++ E         +  +      +            I  +  ++      +
Sbjct: 380 RSNPAAERSFRVEMGDEQNDYQL--LVEKLGPHIRMCAKGATLTGINIAIREKTYRWNLS 437

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              +   +             M    +VT  V AE       +   ++  ++  F+  +S
Sbjct: 438 PIFVDKGI----------NNIMAQGQDVTSFVDAEIQSQAARKEAEESARVRADFLAKMS 487

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  I+G + LLK     + +    ++++ +  S   LL ++NDILD + ++ G 
Sbjct: 488 HELRTPLNGILGVSQLLKGKISNTDD---IEHLDVLCNSGEHLLAVLNDILDFSKIEQGK 544

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILS 696
             +  +   L +L++ V++       E  I   V ++    +F  +D+ RL QI   ++S
Sbjct: 545 FHIQSADFRLVELISAVEKIYTPLCDEKGIGFVVETNVSNNTFAHSDQVRLNQILFNLVS 604

Query: 697 NAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
           NA+ F+ +G  V +    D          SV++ G  I  +    +F  FV       R 
Sbjct: 605 NAIKFTHEGE-VTVSLFCDGESPESRLNISVRDTGIGIERERISHIFEPFVQAEATTTRE 663

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLGL+IV S + +  G + I SS    T  +  +P +
Sbjct: 664 YGGSGLGLAIVHSLVEMLNGQIEIESSIGYGTKFSLSVPIE 704


>gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78]
 gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78]
          Length = 1928

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 26/315 (8%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              A +    DE +  Q  L+  +  + E + + +   Q     V   +   A + L E+ 
Sbjct: 1247 LTAQLKDRSDELEQRQKALQESNAELEEKAALLVR--QNSDIEVKNGEIENARQVLEERA 1304

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ E I  + + 
Sbjct: 1305 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFAETIYGAGSD 1364

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M+++ + I L  L++ V+ +      E N+   V    +L  
Sbjct: 1365 LLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPA 1424

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---------------------AARDNG 717
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         D  
Sbjct: 1425 TLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGK 1484

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               FSV + G  I E   + +F  F         +  G GLGLSI      L GG +   
Sbjct: 1485 MIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQ 1544

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1545 SQPGRGSTFTLYLPL 1559


>gi|34558037|ref|NP_907852.1| sensor/response regulator hybrid [Wolinella succinogenes DSM 1740]
 gi|34483755|emb|CAE10752.1| SENSOR/RESPONSE REGULATOR HYBRID [Wolinella succinogenes]
          Length = 1263

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 123/244 (50%), Gaps = 13/244 (5%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L +  E    A+  K+ F+ ++S+E+R+PL +I+GF ++L+ S LG    K+ +Y E I
Sbjct: 784  ELLKAKELAESANRAKSEFLSNMSHEIRTPLNSILGFAEILQHSSLGI---KEQRYAENI 840

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  +L++++NDILDL+ V+AG M +    + L  L+ EV      K  E N+ + ++ 
Sbjct: 841  LKSGKVLMDIINDILDLSRVEAGKMLIQKHPVELEALVREVYGLFLMKAKEKNLDLDLVI 900

Query: 674  DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNN 726
            D +L    V D  R+ QI   ++ NA+ F+ KG  V +   R         + +  +K++
Sbjct: 901  DERLPKILVIDGTRVRQILFNLVGNAIKFTHKG-YVRISVERGERESEGGIELVLRIKDS 959

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I +     +F  F   + +  R   G GLGL+I +    L  G +S+ S +   +  
Sbjct: 960  GIGIAQADSNKIFEAFEQQSGQDNRLYGGTGLGLAICQRLARLMDGEISLVSQEGLGSEF 1019

Query: 785  NCRI 788
               +
Sbjct: 1020 IVSL 1023


>gi|312602473|ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI
           454]
 gi|312169787|emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 685

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 157/393 (39%), Gaps = 22/393 (5%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETI------DHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            E +  Q   + +      V+   +      + + + V    PDGRI  ++    S    
Sbjct: 140 IERVLAQKRAQREIAEAELVRARELHYRTLAEAIPQLVWTALPDGRIDFASKQLLSYTGM 199

Query: 470 ---------EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                      + L     +       S    +S  +D+   +  + D   +  +     
Sbjct: 200 DAPSLLGHVWPDALVHPEDLERTVQRWSDALRDSSDYDVEHRLRAA-DGAWRWFKTRAAP 258

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L D     S     +       +   +         +      +A  +K+ FV  +S+EL
Sbjct: 259 LLDGAGRVSKWFGTSTDIDDQKLAAQEREHLLANERQARSEAERASRLKDEFVATLSHEL 318

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+G+  LL      S  ++  + ++ I  ++ +   +++D+LD++ + AG ++L
Sbjct: 319 RTPLNAIVGWAQLLLRDA--SDPARVEKGLQVIHRNARLQSQMIDDLLDMSRIMAGKVRL 376

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N   + L D++ +V  ++        +R+  +  G       D  RL QI   +L+NA+ 
Sbjct: 377 NVQRVELVDVITDVIATVQLAADAKELRVMPVL-GAPAVVNGDPARLQQIIWNLLTNAIK 435

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           F+ +   V +     +G+    V + G  I E     VF RF        R   G+GLGL
Sbjct: 436 FTPRRGRVAVTLTSGDGEARLVVSDTGCGIREAFLPHVFERFRQEDASTTRQFGGLGLGL 495

Query: 759 SIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
           SIV+  + +HGGH++ +S  E    T    +P+
Sbjct: 496 SIVKELVEMHGGHITAASDGEQRGATFTVTLPT 528



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 14/156 (8%)

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
            A  R+L+      E+AE  L   +  +    ++ L +++  LVW     G I +A+   
Sbjct: 138 QAIERVLAQKRAQREIAEAELVRARELH----YRTLAEAIPQLVWTALPDGRIDFASKQL 193

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC----ETVSTLEHGNNKSYK 278
              T  +       +     +  E++++ +   S   ++      E       G  + +K
Sbjct: 194 LSYTGMDAPSLLGHVWPDALVHPEDLERTVQRWSDALRDSSDYDVEHRLRAADGAWRWFK 253

Query: 279 IVRVLNSFGEA------GIAIDVSKEITVNDQLTHT 308
                   G        G + D+  +     +  H 
Sbjct: 254 TRAAPLLDGAGRVSKWFGTSTDIDDQKLAAQEREHL 289


>gi|262192282|ref|ZP_06050438.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae CT
           5369-93]
 gi|262031832|gb|EEY50414.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae CT
           5369-93]
          Length = 785

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|302546427|ref|ZP_07298769.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302464045|gb|EFL27138.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1432

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 17/269 (6%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            T        +  R+   L EK   L  A + K+ F+ ++S+ELR+PL +++    LL  +
Sbjct: 888  TTELRQRSNELQRSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADN 947

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                L+ ++ Q+   I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +
Sbjct: 948  ADQRLSPQEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLMKLLDYVHAT 1007

Query: 658  IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-- 714
                  +  +  ++     +     +D QR+ QI   +LSNA+ F+  G  V L+  R  
Sbjct: 1008 FRPLAIDRGLSFEIAVGEDVPRELYSDEQRIQQILRNLLSNALKFTPSGG-VKLRVERAV 1066

Query: 715  -----------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
                        +    FSVK+ G  I  +    +F  F  +      +  G GLGLSI 
Sbjct: 1067 GTEFQEETLRDADAVVAFSVKDTGIGIASEKLPVIFEAFQQSDGTTSRKYGGTGLGLSIS 1126

Query: 762  ESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 + GG +   S     +     +P+
Sbjct: 1127 REIAGMLGGRIIAESEQGVGSCFTFYVPA 1155


>gi|50122492|ref|YP_051659.1| hybrid sensory histidine kinase BarA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613018|emb|CAG76469.1| two-component sensor kinase and response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 933

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 12/246 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LN+ Q+ Y+  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTPLNTTQTDYLLTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++ND+LD + ++AG + L      L+  L++V   +A   HE  + + +  
Sbjct: 335 ERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSI 394

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
              +   FV D  R+ QI + +L NA+ F+ +G+  + ++  R           +++ G 
Sbjct: 395 QNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF 514

Query: 787 --RIPS 790
              +P 
Sbjct: 515 HITLPL 520


>gi|281418943|ref|ZP_06249961.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|281407400|gb|EFB37660.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 463

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 120/235 (51%), Gaps = 3/235 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + +    ++KN F+  +S+ELR+PLT+I+G+   + +  + S   +  + ++ I 
Sbjct: 231 LNYMAQEVANQQKMKNDFIASISHELRTPLTSIMGWIITINSGDIDS-KEELKEGLDIIE 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L  LV+++LD +  DAGI+ L  S + L +LL  +K+ +  +     I + +  D
Sbjct: 290 RESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDVD 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD  RL Q+F  I+ N+  F+ KG  + +   ++    +  ++++G  IPE+ 
Sbjct: 350 EHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENGVLIRIEDSGCGIPEED 409

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              V  RF   ++     G GLGL+I +  + LH G + I S+    T ++  +P
Sbjct: 410 LPRVKQRFFKGSNVVS--GSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILP 462


>gi|241203167|ref|YP_002974263.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
 gi|240857057|gb|ACS54724.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
          Length = 1276

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 112/649 (17%), Positives = 234/649 (36%), Gaps = 62/649 (9%)

Query: 179  AETTLKCKKLSNHISVFKVLFD--SLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
            A      ++++  +  F    D  +    +              +  +          +A
Sbjct: 649  AAEQANFREIAKRLEAFGANKDEPAAPAPM------------EPNATETAAFNEASGPEA 696

Query: 237  IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
             G       +     +   +  E  F   V      +  + +   ++      G+    S
Sbjct: 697  FGAETPTADQADIPSLEEIAPQEAIFENAVEAEREDDGATEEPAVIVEDEATEGLEETAS 756

Query: 297  KEITVNDQLTHTYE--------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            +   +   +    +         +  L VA+ I   +  L   N  F+ L          
Sbjct: 757  QIEVLTSFIPPRIKMTDGLSVGTVDQLPVAVLIHIGDA-LIHANPEFMRLTGYGS----- 810

Query: 349  NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
                   L+ LR    +   L  +  +E             D    P    L  +   + 
Sbjct: 811  -------LDALREVGGIEGLLQRRELEEKAAGSGTMMLVKADDTLAPVTARLQSVRWEDA 863

Query: 409  RGGTIWMF-------------------ENLTVQ-VDLETKYNTLVKVQGETIDHLSEGVA 448
                + +                    E+   + V+   K    V+     ++  ++GV 
Sbjct: 864  NALMLALMPVEGKEDGRGDANRFDGRSEDRPERMVEKVAKLQVEVEELRSILETATDGVV 923

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            V G +G I+  N +  +L+  +E   + G     + A  S+         L    + S  
Sbjct: 924  VIGTEGDIRSMNRSASALFNYDEQE-TRGKPFVMLFAHESQKAVIDYLNGLSGHGVASVL 982

Query: 509  DERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADE 567
            ++ + + G         L  ++  L ++        ++T   R E  L     A   A+ 
Sbjct: 983  NDGREVIGREAAGGFVPLFMTMGQLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETANA 1042

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVND 626
             K  F+  VS+E+R+PL  IIGF+D++   + G + + +  +Y   I  S   +L++VND
Sbjct: 1043 HKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVND 1102

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD++ ++AG M L+++ + LN+ ++E    +  + +   + I+      +   VAD + 
Sbjct: 1103 LLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSQAVPEVVADLRS 1162

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + QI   ILSNA+ F+  G  +++  + + NG  +  V++ G  +           F   
Sbjct: 1163 IKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRSELDQAMKPFRQV 1222

Query: 746  AHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +    R    G GLGL + ++ ++ +    +I+S+    T +    PS+
Sbjct: 1223 SSTQSRHRGDGTGLGLPLTKAMVDANRATFTINSAPNEGTLVEITFPSQ 1271


>gi|149198158|ref|ZP_01875205.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149138760|gb|EDM27166.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 640

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/394 (25%), Positives = 175/394 (44%), Gaps = 36/394 (9%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +DL+ K+N L        D + +G  +    GRI L +    SL       L+    +  
Sbjct: 109 LDLKGKFNYLNNKLYVQRDIIYDGEVL----GRILLVDN-LASLTVPFYKSLNFVISVLV 163

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--------LEYSIIPLP 534
           I    S + + S    L + ++   D  RK  Q     +            L YS   + 
Sbjct: 164 IVLLLSSFLSFSILKKLISPLVHLSDTARKISQYHTYNIRAEYKGKDEIGDLTYSFNEML 223

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------DEIKNSFVQHVSYELR 581
                       +   AE+   E  EA ++A             +++K+ F+ +VS+E+R
Sbjct: 224 TEIQAREDTINRERHNAEQRAVEAEEANKRAKVEFDQRLVAESANKMKSEFLANVSHEIR 283

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  I+GF++LL+      ++ K  +YVE I++S   LL+L+NDILDL+ V+AG ++L 
Sbjct: 284 TPMNAILGFSELLEKE---DIDKKSMEYVEAINSSGRSLLHLINDILDLSKVEAGKLELI 340

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMD 700
           Y+ + L  L+NE     + +  + N+   V  D  +   V+ D  R+ QI   ++ NA+ 
Sbjct: 341 YTKVDLRSLVNEFASVFSREFAKKNLDFLVEVDQVVPDLVSLDEVRIRQILFNLIGNAVK 400

Query: 701 FSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
           F+ +G   V +KA       +   F V + G  I E+  + +F  F   +     +  G 
Sbjct: 401 FTEEGYVKVAIKADLKRNGVVDLDFVVSDTGVGIGEEANRRIFGAFNQASAEISKEYGGT 460

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGLSI +    L GG +++ S+    +     +
Sbjct: 461 GLGLSICKELSQLMGGSINLVSAKGEGSEFTVSL 494


>gi|49480178|ref|YP_035256.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331734|gb|AAT62380.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 896

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 139/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|330901754|gb|EGH33173.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 343

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I
Sbjct: 14  ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTI 70

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+++N+ILD + ++AG + L+     L DLL +    +A   H   + +  ++
Sbjct: 71  EKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLV 130

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGS 728
                 +   D  RL QI + ++SNA+ F+ +G+ V    +     ++     SV++ G 
Sbjct: 131 YRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGI 190

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +    
Sbjct: 191 GLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWI 250

Query: 787 RI 788
            +
Sbjct: 251 SL 252


>gi|154251573|ref|YP_001412397.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155523|gb|ABS62740.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 502

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 8/247 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605
           +  R+ER L+        A+  KN F+  +S+ELR+PL  IIGF++++     G +   K
Sbjct: 243 EQRRSERLLSRSE----AANRAKNDFLAIMSHELRTPLNAIIGFSEIISNQMFGPVGQPK 298

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y   I +S   LL+++NDILD++  +AG ++L    I   + LN   +    +  E 
Sbjct: 299 YVDYAADIRSSGAHLLSIINDILDISKAEAGKLQLEEEPIDPVEALNSTMRMFRQRASEL 358

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVK 724
            + +       +   +AD +   Q+   + SNA+ F+ +   V ++   +  GD + +V+
Sbjct: 359 GVELSFRVRDDIPWIIADPRLFNQVAINLTSNALKFTPENGEVSVELGLNPAGDMVLAVR 418

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I       +F  FV   +A    ++G GLGL +V   +NLHGG + + S  +  T
Sbjct: 419 DTGIGIKAADTTRIFEPFVQVEDAMSRTQQGTGLGLPLVRKIMNLHGGSIELESVVDEGT 478

Query: 783 TINCRIP 789
                 P
Sbjct: 479 IARATFP 485


>gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1252

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 141/303 (46%), Gaps = 6/303 (1%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAE 552
            +   +            + L+G  ++L     E  +       QT    +   +   A+
Sbjct: 515 EEQTQILRQQQEELKQMNEELEGQTQILRQQQEELKVSNEELEEQTRALEMRNKELELAK 574

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             + +K E L  + + K+ F+ ++S+ELR+PL +++  +  L  +K  +L+  Q +    
Sbjct: 575 NDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDEDQVESANI 634

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L+N++LDL+ +++G M +N   +VL   + ++      +  +  + + +I
Sbjct: 635 IYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQATKKKLDLDLI 694

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSI 730
               L      D QRL QI   ++SNA+ F+ +G  + L+  R N    +FSV ++G  I
Sbjct: 695 YYEDLPEKIRTDPQRLDQILKNLISNALKFTERG-RIQLEVKRQNSDKILFSVIDSGIGI 753

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE+   ++F  F  V  +   +  G GLGLSI      L GG + + S     +T +  +
Sbjct: 754 PEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSKVNKGSTFSLLL 813

Query: 789 PSK 791
           P +
Sbjct: 814 PIE 816


>gi|29654391|ref|NP_820083.1| hypothetical protein CBU_1084 [Coxiella burnetii RSA 493]
 gi|29541658|gb|AAO90597.1| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 683

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 108/485 (22%), Positives = 208/485 (42%), Gaps = 30/485 (6%)

Query: 329 QFHNRSFVELWEIDLAFLATNPS------NDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            + + +F  ++ I    L  NP+        E  + LR      +  N K     +   Y
Sbjct: 56  VYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRLRHLIMEWQVKNKKGAAYTVD--Y 113

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +  + + +  H  N  +  V       G    + ++++ +     +++  V      ++ 
Sbjct: 114 RIIDAYGEM-HWINETSYPVYEDDQCLGY-AGVVKDVSSEKLRVKEFDNAVHYFRHFVER 171

Query: 443 LSEGVAVFGPDG-RIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           +S    V G  G +    +P +  +W    E+         +          + +     
Sbjct: 172 VSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNPKSWIDYVLPEDISNGKVNVNFYE 231

Query: 501 AAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTF----VNVTDSVRAERA 554
            A      D +      +         ++ +  P+     ++ F     +VT+    E+ 
Sbjct: 232 TAADQRTPDSKYEFHFRIRRPDGEIRWIKDTYFPIMENGKLVGFAGIAEDVTNDALREKE 291

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+ +Q   ++ IS
Sbjct: 292 LWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLSDEQQGQIDVIS 348

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H+  I++K    
Sbjct: 349 QAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFDYP 408

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
             + S  + D +R+ Q+   +LSNA+ F+ KG  V L A     D       F+VK+ G 
Sbjct: 409 ENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQLTANCLKKDHKKMTLCFTVKDTGI 467

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + +    S+FNRF    + ++ +  GVGLGLSIV+  +   GG +S++S     +   C
Sbjct: 468 GMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFTC 527

Query: 787 RIPSK 791
            IP +
Sbjct: 528 IIPFR 532


>gi|328470474|gb|EGF41385.1| sensor protein TorS [Vibrio parahaemolyticus 10329]
          Length = 988

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 113/238 (47%), Gaps = 7/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S  
Sbjct: 460 RNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDS---GLNPIQKRYAEIINRSGK 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD + ++AG +++      L+ ++ +  Q + ++  E  +      +  + 
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
            +   D  R+ Q+ + ++ NA+ F+  G   + +     D    +F V + G  I +   
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 636

Query: 736 KSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K++F+ F        Q  G GLGL+I +  +   GG + + S +   +     IP +E
Sbjct: 637 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEE 694


>gi|328467898|gb|EGF38938.1| two-component sensor histidine kinase [Listeria monocytogenes 1816]
 gi|332310706|gb|EGJ23801.1| hypothetical protein LMOSA_11920 [Listeria monocytogenes str. Scott
           A]
          Length = 594

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 225 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 284

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +L     L ++    +
Sbjct: 285 VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTLDKPYVLRAN----F 334

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 335 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 383

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 384 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 442

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 443 DFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 501

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 502 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 561

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 562 AHGGRIWAERNKTKGTIIKFTLP 584


>gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 1032

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 165/384 (42%), Gaps = 34/384 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +      +    +     G+ +    DG + L N A   L                
Sbjct: 414 RRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELS--------------- 458

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQT 538
            A T               A+  S D++   LQ  L +  +      L+ +++       
Sbjct: 459 -ARTSGEPLPIRLWEAYRHAVGRSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGA 517

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+PL  IIG  +LL+
Sbjct: 518 NVLLCTLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLR 577

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S    L+ +QS+ +  + + S  LL+++NDILDL+ V++G M L      ++ LL E  
Sbjct: 578 RS---PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETV 634

Query: 656 QSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            + A       +  +  I +G    +  D  R+ Q+ S ++ NA+ F+ +G   + +   
Sbjct: 635 DAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRA 694

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           KAARD       V + G  I  D   ++F+ +        RR  G GLGL + +  + + 
Sbjct: 695 KAARDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIM 754

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + I S  +  TT+   +P +E
Sbjct: 755 GGSIEIDSLPDFGTTVTVALPLRE 778


>gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|315647993|ref|ZP_07901094.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315276639|gb|EFU39982.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 894

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 15/254 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L    + L K+ + K+ F+ ++S+ELR+PL +++  + +L  +K G+L  ++  Y 
Sbjct: 479 AASELENYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILSENKQGNLTEEEQHYA 538

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S + LLNL+NDILDL+ V+AG +++    + L +L   ++   +      N+  +
Sbjct: 539 SVIHNSGSELLNLINDILDLSKVEAGKLQIEMDLVNLTELPEVMEGYFSKSAESKNLEFE 598

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----------GDF 719
           +     L     +D  RL QI   +LSNA+ F+  GS V L   + N          G+ 
Sbjct: 599 IEMAEDLPDMMYSDGMRLHQILRNLLSNAIKFTESGS-VKLSVKKMNSIVTSDFIISGEV 657

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
           I FSV++ G  I  +  + +F  F        RR  G GLGLSI      L GG++++ S
Sbjct: 658 IAFSVEDTGIGIAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITVES 717

Query: 777 SDEGVTTINCRIPS 790
            +   +     +P 
Sbjct: 718 EEGSGSIFVLYLPL 731


>gi|310822048|ref|YP_003954406.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395120|gb|ADO72579.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1097

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 170/393 (43%), Gaps = 27/393 (6%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQV--DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            +   +   G  +    N T      L        +     ++ +++GV +      I +
Sbjct: 258 RLQAFTEDDGVLLDTLANQTADAIQSLRAVEEEARRRIERMVEAMADGVLLTDEQNAIVV 317

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA R L +  E           ++A   +   E  G+     I        + LQ  +
Sbjct: 318 INPAARRLLRVTE----------EVSALTGQMLEERLGFQPSELIRGWEYSGSQMLQEEV 367

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           EL  D  ++ ++ P+ +A+  L  V V      E+ +          +E K+ FV  VS+
Sbjct: 368 ELF-DRHIQCTVTPVNDARGTLKGVCVVLRDVTEQKML---------EERKDEFVSMVSH 417

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT+I G  DL+     G +N KQ +Y+     S+  L +LV+D+LDLA    G +
Sbjct: 418 ELRTPLTSISGALDLVLNFLAGDINEKQQRYLFMARESTEKLNSLVDDLLDLAKFAKGRL 477

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           ++N+    L++L+    +       E  +++ +         +AD  R+ Q+ + +L+NA
Sbjct: 478 RMNFELTYLDELVRRAAEKYGPAFQERRVKVLMTLPQHGLRVLADPSRVNQVLNNLLTNA 537

Query: 699 MDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRG 753
           + F+ +G  V L+    +   G    S  N+G  I E+  + +F+RF           RG
Sbjct: 538 VKFTPEGGEVRLELKATSALPGHVALSCWNSGEPIAEESLERIFDRFEQARTPSNRTVRG 597

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            GLGL+I    +  HGGH+    S EGV  +  
Sbjct: 598 TGLGLAICRHIVEAHGGHIWCEPSTEGVRFVTV 630


>gi|224535278|ref|ZP_03675817.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523086|gb|EEF92191.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 755

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 118/645 (18%), Positives = 238/645 (36%), Gaps = 74/645 (11%)

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQ---AGDILWANISYKKNTETEGIVF---QKAIGES 240
           +        ++  ++ +   W  D       IL  N  +K     E ++     +     
Sbjct: 2   RTEESKKNLEMAMEAANMSSWVYDVYKMEFGILHGNSVFKSGMSLEQLLPMLHPQDCVPL 61

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
           R+LF   I K ++      + F E      H  ++              G  +DV++++ 
Sbjct: 62  RELFSRLINKEVLQGQLTVRVFNEQEGEFRHYESRMRLSTEHFGKLQIVGTLLDVTEKLQ 121

Query: 301 VNDQLTH--TYEILHNLTVAIAIFDQNRYLQFH-------NR-SFVELWEIDLAFLATNP 350
           +  +         L      I  +D N  +Q         N  +  +L  ++      +P
Sbjct: 122 MAKKTQDLLVKRELAMKVNDIVHWDFNVQMQTFEAYNDPVNDYASDKLVSLEEYLNVIHP 181

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
            +  L+     +  L   +N      N+    ++   + DTW   N   +      +   
Sbjct: 182 EDRSLVNDALQSMLLGRNMNI-----NLTCRIQTR--YDDTWQYCNITGVPFEFGESGDV 234

Query: 411 GTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG------------------ 451
                F +N++    L  +          T   +      +                   
Sbjct: 235 IRYTGFRQNISKLHQLNEELKERNYKMELTFKTVGMSYWDYDVKTRQYRSFNDPVNDFNP 294

Query: 452 -----PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
                P+  +K ++P      +     +S G +        SR   + D   L   I+T 
Sbjct: 295 EKAIMPEDYLKAAHPEDTERVRENIVGMSAGQYKEFSLQYRSRTKWDQDWQTL---IVTG 351

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
              ER            +V+ Y+ I   N +            +  + L E  +    +D
Sbjct: 352 LPSERDK--------KGNVIRYTGIAFNNTK----------WEKMAQELKEMKDKAELSD 393

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K++F+ ++S+E+R+PL  I+GF++LL  S       ++ +Y   I +++ +LL L+ND
Sbjct: 394 RLKSAFLANMSHEIRTPLNAIVGFSELLVDS---DDPDEKKEYWHIIESNNDLLLRLIND 450

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ +++GI+        L  L NE+   + +K+   ++ +   +         D  R
Sbjct: 451 ILDLSKIESGIIDRKRERFNLTQLCNELYVMMRSKIPNADVELVQDNPCPECWIFLDSNR 510

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q++   L+NA+ ++  G  + +  + +     F V++ G+ IP+++   VF RF    
Sbjct: 511 LKQVWMNFLTNAVKYTRSG-YIRMGYSVEKDGIRFYVEDTGTGIPKELQDRVFGRFQKLN 569

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              Q  G GLGL+I  + +   GG +  +S     +T    +P +
Sbjct: 570 EFVQ--GTGLGLAISRAIVEAAGGEIGFTSEQGIGSTFWAWVPCE 612


>gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|153868974|ref|ZP_01998688.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
 gi|152074468|gb|EDN71320.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
          Length = 324

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 136/291 (46%), Gaps = 25/291 (8%)

Query: 507 FDDERKSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           + DE  +L  T   ++  + + +SI+   N ++          V+AE A           
Sbjct: 38  YQDEVGTLANTFNQMAKQIRISFSILETKNEES------QKARVQAEEA----------- 80

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ FV ++++ELR+PL  IIG++++L+     +        +E I+++   LL L+N
Sbjct: 81  NKAKSIFVANMTHELRTPLNAIIGYSEMLQEEAEDTGQKDLVPDLEKIASAGKHLLALIN 140

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD + V+AG M L      +N +L +V  +I   + +NN  + V     LG   +D  
Sbjct: 141 DVLDFSKVEAGKMGLYLEEFEINTMLQDVIGTIKQVIEKNNNHLIVNYPKNLGIMQSDVT 200

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ++ Q    +LSNA  F+  G T+ L+A R            V + G  +  D  + VF  
Sbjct: 201 KVRQCLFNLLSNANKFTETG-TITLQANRYSQKGEDWISLKVSDTGIGMTADQIEKVFLA 259

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F        R   G GLGL I + F  + GG V++ S     +T +  +P+
Sbjct: 260 FTQADASTTRKYGGTGLGLVITKQFCQMMGGEVNVESQFGKGSTFSINLPA 310


>gi|153001659|ref|YP_001367340.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS185]
 gi|151366277|gb|ABS09277.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 933

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 186/532 (34%), Gaps = 62/532 (11%)

Query: 275 KSYKIVRVLNSFGE-----AGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQN 325
           + Y++   L   G        IA ++       +               L  +IAIFD N
Sbjct: 39  RFYELEDTLVEQGSNIIEPLSIASEIGLVANDREATKRLLAAAQLNKSTLVKSIAIFDAN 98

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             L   +      +  D   +    + + L        ++    +    +  IFS   S+
Sbjct: 99  NQLFVTSH-----YHKDFEIMRYKEALNTL-----HKTEIEHVGDSLILRTPIFSTGPSA 148

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                     +GQ L          G I +  N         K   L++     +     
Sbjct: 149 APANYDIQTDDGQLL----------GYISIIIN---------KERALLEQHRAAVAAFI- 188

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + + G    +            T     +    I  +    ++         L   +I 
Sbjct: 189 -IVLIGVQLNLLF----------TFRLVKNVTQPITEMVRVVAKIREGKLDARLDGNLIG 237

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             D  ++ +      LS+   E           +   +   +    E  L    +   +A
Sbjct: 238 ELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVE--LDLAKKRALEA 295

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y++ I  S+T LL ++N
Sbjct: 296 SRIKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYIKTIERSATNLLGIIN 352

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG M L      L + + +    I+       + + V     +  +   D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFN 740
            R+ QI + ++ NA+ F+  GS  V ++    + +       V + G  I E     +F 
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F        RR  G GLGL I +  +N  GG +  +SS E  +     +P 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524


>gi|153955726|ref|YP_001396491.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219856095|ref|YP_002473217.1| hypothetical protein CKR_2752 [Clostridium kluyveri NBRC 12016]
 gi|146348584|gb|EDK35120.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569819|dbj|BAH07803.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 321

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 122/244 (50%), Gaps = 5/244 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS---KQSQ 608
           ER     NE+ +K ++    F+  +S+EL++PL  I     +L   K         K+ +
Sbjct: 41  ERNTELLNES-QKLNKNITEFISDISHELKTPLNVIFAAIQVLAACKSCEDQKCINKRDE 99

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ +  +   L+ L+N++LD++ +D+G ++LN     +  ++ ++  S+   +    I 
Sbjct: 100 YLKIMKENCYRLMKLINNLLDISKLDSGFIRLNCHNENVVSIVEDIALSLVPYVESKGIE 159

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +   ++ +      D  ++ +I   +LSNA+ F+     + +    D+ +    VK+ G 
Sbjct: 160 LIFDTNVEEKIMAVDSDKMERIILNLLSNAVKFTPPEGKIYVNVQCDDENVYIVVKDTGI 219

Query: 729 SIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPED  K +F RF        + +G G+GL + +SF+ LHGG +S+ SS  G +    R
Sbjct: 220 GIPEDKLKVIFERFGQAGSTVEENQGSGIGLYLAKSFVCLHGGEISVKSSRGGGSEFTVR 279

Query: 788 IPSK 791
           +P K
Sbjct: 280 LPVK 283


>gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
           74-1112]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|261200755|ref|XP_002626778.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239593850|gb|EEQ76431.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239607275|gb|EEQ84262.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ER-3]
          Length = 2346

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ +VS++LR+P+  +IG ++LLK +   SL+ +Q  YV
Sbjct: 1821 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---SLDREQDGYV 1877

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + L + + EV +++     +  ++  
Sbjct: 1878 ESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTI 1937

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFS--V 723
               DG   +   + D  RL QIF  +LSN+  F+ KGS V +KA     D G    +  V
Sbjct: 1938 EDLDGVDPNLLVMGDPVRLHQIFMNLLSNSYKFTPKGS-VTVKAKVTDEDEGRIRITCKV 1996

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I  +    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 1997 ADTGIGISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGV 2056

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2057 GTTVTFTL 2064


>gi|158425731|ref|YP_001527023.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
           571]
 gi|158332620|dbj|BAF90105.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
           571]
          Length = 1121

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 11/264 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R +  L +  E    A+  K+ +V  +S+ELR+PL  I+G+  LL+ 
Sbjct: 640 QTTLLMREIEAHKRTDAKLQKAKEVAEAANLAKSRYVVGISHELRTPLNAILGYAQLLER 699

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               S+ + +   +  +  SS  L  L++ +LD++ ++AG + L    + + DLL+++  
Sbjct: 700 D--TSIPAHRRDAIRVVRRSSEHLSGLIDGLLDISKIEAGRLHLYRDEVRIRDLLDQLVD 757

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     I    +   +L + V  D +RL QI   +LSNA+ F++KG  V L+    
Sbjct: 758 MFRLQASARGIEFIHMRSERLPAVVFTDEKRLRQILINLLSNAIKFTAKGH-VALRVTYR 816

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           N    F V++ G  I  +    +F  F   +  G     G+GLGL+I +    + GG +S
Sbjct: 817 NQVAEFEVEDTGIGIAPEERGRIFEPFERGSRGGAFNAIGIGLGLTITKLLTEIMGGEIS 876

Query: 774 ISSSDEGVTTINCRI-----PSKE 792
           + S  +  +T   R+     P +E
Sbjct: 877 LKSELDKGSTFKVRLLLSEAPGRE 900


>gi|15672378|ref|NP_266552.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723269|gb|AAK04494.1|AE006276_9 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 480

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 156/385 (40%), Gaps = 37/385 (9%)

Query: 417 ENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           E++   Q +LE + N L       + ++ +GV      G I ++N +      T +N L 
Sbjct: 99  EDIVRTQNNLENQRNQL----DSILAYMVDGVIATDRRGNIIMANKSALHYLNT-DNDLL 153

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +I  +     +Y             I + D   +S+   ++          I     
Sbjct: 154 MQKNIVEVLKITDQYNFYDLLEKEPEITIETHDSGNESISLHIKFALFRRESGFI----- 208

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  +    ++T+  +AER               +  FV +VS+ELR+PLT++  + + L+
Sbjct: 209 SGIIAVLHDMTEQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEALE 254

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +       S ++      +  ++ +++D+L L+ +D   + LN   I L   L+   
Sbjct: 255 DGAIED-KETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQI 313

Query: 656 QSIATKMH-------ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             +   +         +N  +      +      D  ++ Q+   I+ NA+ +S KG T+
Sbjct: 314 NRLDQILETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTI 373

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFI 765
            +   +   D + S+ + G  IP+     +F+RF      +   +  G GLGLSIV   +
Sbjct: 374 TISVEKRESDVLISISDQGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIV 433

Query: 766 NLHGGHVSISSS-DEGVTTINCRIP 789
            +HGG +  SS  +   TT +  +P
Sbjct: 434 KIHGGTIFASSEGEGKGTTFSFTLP 458



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 83/274 (30%), Gaps = 39/274 (14%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           V  +  + +Q      IL  +   +   D+   +   N+S +     D   L        
Sbjct: 102 VRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQK----- 156

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPR 409
               +    K+ +Q N+    E    +  + ETH          +LH+        S   
Sbjct: 157 ---NIVEVLKITDQYNFYDLLEKEPEI--TIETHDSG---NESISLHIKFALFRRESGFI 208

Query: 410 GGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            G I +  ++T Q   E            +  T +      ++ L +G A+   +     
Sbjct: 209 SGIIAVLHDMTEQDKAERERRLFVSNVSHELRTPLTSVKAYLEALEDG-AIEDKETASSF 267

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N +     +           I ++        +          +I   D +   L   L
Sbjct: 268 INVSLTETNRMIRM-------ISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL 320

Query: 519 ELLSDSVL--EYSIIPLPNAQTMLTFVNVTDSVR 550
           E  S+ ++   ++++   + Q +   ++     +
Sbjct: 321 ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQ 354


>gi|281490938|ref|YP_003352918.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374696|gb|ADA64216.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 480

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 156/387 (40%), Gaps = 41/387 (10%)

Query: 417 ENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           E++   Q +LE + N L       + ++ +GV      G I ++N +      T +N L 
Sbjct: 99  EDIVRTQNNLENQRNQL----DSILAYMVDGVIATDRRGNIIMANKSALHYLNT-DNDLL 153

Query: 476 PGTHIRNIAATCSRY--YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              +I  +     +Y  Y+  +             +E  SL     L        S I  
Sbjct: 154 MQKNIVEVLKIADQYNFYDLLEKEPEITIETHDAGNESISLHIKFALFRRESGFISGI-- 211

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    ++T+  +AER               +  FV +VS+ELR+PLT++  + + 
Sbjct: 212 -----IAVLHDMTEQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEA 252

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+   +       S ++      +  ++ +++D+L L+ +D   + LN   I L   L+ 
Sbjct: 253 LEDGAIED-KETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDY 311

Query: 654 VKQSIATKMH-------ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
               +   +         +N  +      +      D  ++ Q+   I+ NA+ +S KG 
Sbjct: 312 QINRLDQILETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGG 371

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVES 763
           T+ +   +   D + S+ + G  IP+     +F+RF      +   +  G GLGLSIV  
Sbjct: 372 TITISVEKRESDVLISISDQGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHD 431

Query: 764 FINLHGGHVSISSS-DEGVTTINCRIP 789
            + +HGG +  SS  +   TT +  +P
Sbjct: 432 IVKIHGGTIFASSEGEGKGTTFSFTLP 458



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 83/274 (30%), Gaps = 39/274 (14%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           V  +  + +Q      IL  +   +   D+   +   N+S +     D   L        
Sbjct: 102 VRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQK----- 156

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPR 409
               +    K+ +Q N+    E    +  + ETH          +LH+        S   
Sbjct: 157 ---NIVEVLKIADQYNFYDLLEKEPEI--TIETHDAG---NESISLHIKFALFRRESGFI 208

Query: 410 GGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            G I +  ++T Q   E            +  T +      ++ L +G A+   +     
Sbjct: 209 SGIIAVLHDMTEQDKAERERRLFVSNVSHELRTPLTSVKAYLEALEDG-AIEDKETASSF 267

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N +     +           I ++        +          +I   D +   L   L
Sbjct: 268 INVSLTETNRMIRM-------ISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL 320

Query: 519 ELLSDSVL--EYSIIPLPNAQTMLTFVNVTDSVR 550
           E  S+ ++   ++++   + Q +   ++     +
Sbjct: 321 ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQ 354


>gi|229084388|ref|ZP_04216668.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
 gi|228698928|gb|EEL51633.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
          Length = 441

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 120/254 (47%), Gaps = 5/254 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +  +  R  +A  +   +L   D  +  F+ +VS+ELR+PL+ I G+++ +      
Sbjct: 186 TVSSEDEIGRLGKAFNKMAHSLETEDAKRKEFLANVSHELRTPLSYIKGYSEAILDGVAK 245

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +QS++++ I   +  +  LV+D+LDLA ++     L    IV   L+ +V ++   
Sbjct: 246 G--EQQSKFMQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFAQLIEDVLETYEL 303

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K  E  +RI    D  +   + D  R+ Q+   +L NA+ ++++  ++ ++  + +    
Sbjct: 304 KWTEKQLRISKDLDPDII-VMIDEDRMQQVLHNLLDNAIRYTNQNGSIAIRLEKKDNSCE 362

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +++ G  I  +  + +  RF         Q  G GLGL+IV+  + +H G   + S  
Sbjct: 363 LRIEDTGIGIDSEHLEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVYIHEGEWQVESEK 422

Query: 779 EGVTTINCRIPSKE 792
              TT+   +  KE
Sbjct: 423 GKGTTVIITLYMKE 436


>gi|282600301|ref|ZP_05973770.2| sensor kinase protein RcsC [Providencia rustigianii DSM 4541]
 gi|282565779|gb|EFB71314.1| sensor kinase protein RcsC [Providencia rustigianii DSM 4541]
          Length = 927

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 176/393 (44%), Gaps = 42/393 (10%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFG-PDGRIKLSNPA 462
           GG I+    L  +  LE   NT ++++       + +     G+ +    DG   LSN  
Sbjct: 310 GGLIFFLIWLLERKMLEPAENTAIRLEEHEQFNHKIVASAPVGIIILRLSDGGNILSN-- 367

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                               +A    R  N+ D   + + I      ++ S    +   S
Sbjct: 368 -------------------ELAHNYFRLLNDEDKQRILSII-----RQKSSNYIDVVTTS 403

Query: 523 DSVLEYSII--PLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + L+ S +     N    +   ++++  V+ E++L +  +A  +A++ K+ F+  VS+E
Sbjct: 404 GTHLQISFVNSRYQNEDVAICVLIDISIRVQMEKSLQDVADAAEQANQAKSMFLATVSHE 463

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  IIG  +LL+      L+ K  + V  +  SS++LL +++DILD + +++  +K
Sbjct: 464 LRTPLYGIIGNIELLQRY---DLSDKAVRLVSTMDNSSSLLLQIISDILDFSKIESEQLK 520

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
           +   +    D+   V  +      + +I +    +  +   + +D  RL Q+ S I++N+
Sbjct: 521 IENKSFNCRDVFAFVLANYVPLASKKHISLYSYVEPNIPDLMLSDAVRLQQVISNIVNNS 580

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLG 757
           + F+  G  V+L   +D+      +K++G  +   +   +F+ F          +G GLG
Sbjct: 581 IKFTDSG-FVMLHVWKDSNYLKIEIKDSGIGMTPAVVMQLFDPFFQVYDQNNGHKGTGLG 639

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I E  INL  G ++++S     +T   RIP 
Sbjct: 640 LAICEKLINLMDGDIAVNSQAGLGSTFTIRIPL 672


>gi|217958585|ref|YP_002337133.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
 gi|217065019|gb|ACJ79269.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
          Length = 896

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG-------STVILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KG       S      + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|1237202|emb|CAA65612.1| histidine kinase [Dictyostelium discoideum]
          Length = 1670

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 147/358 (41%), Gaps = 29/358 (8%)

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            GV      G I  +N             L  G                 + +++ A  + 
Sbjct: 928  GVMFSTFKGIILDANDMLLQTIGYTRGDLENGK-------IDWMLLTPPEHFEISARALQ 980

Query: 506  SFDDER--KSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                +R  + ++      S   +   I   + +  T      V D  R  +A      A 
Sbjct: 981  ELKAKRWCQPIEKAYIHKSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQA----EMAA 1036

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +A  +K  F+ ++S+ELR+P   I+G + LL  S+   L + Q   ++ I  S+  L++
Sbjct: 1037 IEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQ---LTNTQRDNIDSIKRSTDSLIS 1093

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD---GKLGS 679
            L+NDILD + ++ G + L   +  L  ++ EV  S AT  +   I +  +          
Sbjct: 1094 LINDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMGRDYPVPPV 1153

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMC 735
               DR  L ++   ++ NA+ F+  G  ++ +    ++GD     F+VK++G  IPE+  
Sbjct: 1154 IFGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSGIGIPENKI 1213

Query: 736  KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS---SDEGVTTINCRI 788
            + +F  F  +  +   +  G GLGLS  +  + L GG++ + S        TT    I
Sbjct: 1214 EQIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEGGKGTTFWFAI 1271


>gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|75910179|ref|YP_324475.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703904|gb|ABA23580.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 811

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 131/290 (45%), Gaps = 21/290 (7%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA--ERALTEKNEALRKADEI 568
           R++++  L+ L        +I L      +T + V   V+A  +  L +  EA   A+  
Sbjct: 288 RENIESRLQFLD-------LIALIVGGLTITMITVLWRVQAFEQAQLKKSKEAADLANHA 340

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  I+G   +L+ S    L  ++  ++  I    + LL L+NDIL
Sbjct: 341 KSEFLANMSHELRTPLNGILGCAQILQRS--SKLPEQEQHHINIIEQCGSHLLTLINDIL 398

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           DLA ++A  ++L+   +     +  + +    +  + +I         L ++V  D +RL
Sbjct: 399 DLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFIYEPASNLPTWVHIDAKRL 458

Query: 688 LQIFSKILSNAMDFSSKGST-VILKAARD-------NGDFIFSVKNNGSSIPEDMCKSVF 739
            Q+   +L NA+ F+  G   + ++   +       N    + +++ G  I +     +F
Sbjct: 459 RQVLLNLLGNAIKFTDHGQVKLKVETIEESSNQKPVNHRIRYCIEDTGIGITDAELSKIF 518

Query: 740 NRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F      + Q  G GLGL+I    + + G  + ++S     +T    +
Sbjct: 519 LPFEQVGEKKRQTEGTGLGLAITRQLVQMMGSDIHVTSQVGKGSTFWFEL 568


>gi|66821389|ref|XP_644179.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74860304|sp|Q869S5|DOKA_DICDI RecName: Full=Hybrid signal transduction protein dokA
 gi|60471990|gb|EAL69943.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1671

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 147/358 (41%), Gaps = 29/358 (8%)

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            GV      G I  +N             L  G                 + +++ A  + 
Sbjct: 929  GVMFSTFKGIILDANDMLLQTIGYTRGDLENGK-------IDWMLLTPPEHFEISARALQ 981

Query: 506  SFDDER--KSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                +R  + ++      S   +   I   + +  T      V D  R  +A      A 
Sbjct: 982  ELKAKRWCQPIEKAYIHKSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQA----EMAA 1037

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +A  +K  F+ ++S+ELR+P   I+G + LL  S+   L + Q   ++ I  S+  L++
Sbjct: 1038 IEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQ---LTNTQRDNIDSIKRSTDSLIS 1094

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD---GKLGS 679
            L+NDILD + ++ G + L   +  L  ++ EV  S AT  +   I +  +          
Sbjct: 1095 LINDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMGRDYPVPPV 1154

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMC 735
               DR  L ++   ++ NA+ F+  G  ++ +    ++GD     F+VK++G  IPE+  
Sbjct: 1155 IFGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSGIGIPENKI 1214

Query: 736  KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS---SDEGVTTINCRI 788
            + +F  F  +  +   +  G GLGLS  +  + L GG++ + S        TT    I
Sbjct: 1215 EQIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEGGKGTTFWFAI 1272


>gi|330901517|gb|EGH32936.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 573

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 148/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 235 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGH---------SLGEALG 285

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 286 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHVLGAVMVLHDVT 345

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 346 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 396

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 397 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQDIVLML 456

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 457 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 516

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 517 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 573


>gi|324325033|gb|ADY20293.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 896

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 139/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
 gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|163849986|ref|YP_001638029.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661591|gb|ABY28958.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 786

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 139/770 (18%), Positives = 259/770 (33%), Gaps = 102/770 (13%)

Query: 90  DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
                    L  +         L+  E WL++     L      L        L    ++
Sbjct: 10  SARARADTILGIQRTTGTAQARLIRAETWLRYALPALLVVFMLTLLGVA---ALQMRGRH 66

Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
           D A+++  R   + A L  L+L    S  AET L+     + +   + +           
Sbjct: 67  DEAMRVATREVEAFARLSALALSNA-SSAAETRLERVLPVHLLPTGREVL--------VI 117

Query: 210 DQAGDILWAN---------ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
              G I  A            Y  + E   I+ + A   +  L             +   
Sbjct: 118 GPGGRIRAAYPAPAPAETFAGYLADGEPIAILGESAGAMTVNLQAGGQAVVAARRLSHGM 177

Query: 261 NFCETVSTLEHGNNKSYKIVR---------VLNSFGEAGIAIDVSKEITVNDQL-----T 306
                V   E   +  +++            L   G A   I  ++     D++      
Sbjct: 178 GEVAVVQRFEPLADNWWRMFGHHAVSLSAIALVLAGMATAYILQTQRAQAADEVCDLVKQ 237

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
                L      +  +D  R   F + S   L            S  ++   L +     
Sbjct: 238 RLDTALGRGRCGLWDWDIARGTIFWSDSMYALLGYTPE--KDLLSFGDVNALLHA----- 290

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-------NPRGGTIWMFENL 419
           E  +  +   ++ + + + + H+      +G+ + +   +       +     + +  ++
Sbjct: 291 EDGDLYSLARHLAASHATVD-HEFRIRDASGEWIWLRTRAEIVEDAVDGSRHLVGIAMDV 349

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q  L     T      + ++ +SE   ++    R+ L N  FR L         PG  
Sbjct: 350 TEQRRLAEFTATADMRLRDAVEAVSEAFVLWDASNRLVLCNSKFRDLHALASEDAVPG-- 407

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPNAQ 537
                    R Y+E  G      +        +    T  +EL     L+ S     +  
Sbjct: 408 ---------RRYDEIMGRGALPPVRRGIPGSERGPSRTFEVELTDGRWLQVSERRTKDGG 458

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKA-------------------------------- 565
            +    ++T   R +  L      L +                                 
Sbjct: 459 YVSVGTDITSLKRHQEQLVTSERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARA 518

Query: 566 ---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621
              ++ K+ F+ ++S+ELR+PL  I+GF +L+++   GSL + + + Y   I  S T LL
Sbjct: 519 EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLL 578

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           ++++DIL ++ ++A  +KL    I L   L      +A +    ++ I +   G L   +
Sbjct: 579 SVIDDILHMSRIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSIDLELAGTL-HVL 637

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD + L QI   I+ NA+ F+ +   + L+    NG     + + G  IP+     +   
Sbjct: 638 ADERALQQILLNIIQNAVKFTPERGRIALRGRSCNGFVHLFIGDTGIGIPKTAISKLGRP 697

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F           +G GLGL+I  S   LHGG + I S +   T +  R+P
Sbjct: 698 FEQVETNLTRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLP 747


>gi|146319012|ref|YP_001198724.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33]
 gi|146321222|ref|YP_001200933.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33]
 gi|253752079|ref|YP_003025220.1| sensor histidine kinase [Streptococcus suis SC84]
 gi|253753904|ref|YP_003027045.1| sensor histidine kinase [Streptococcus suis P1/7]
 gi|253755221|ref|YP_003028361.1| sensor histidine kinase [Streptococcus suis BM407]
 gi|145689818|gb|ABP90324.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33]
 gi|145692028|gb|ABP92533.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33]
 gi|251816368|emb|CAZ51999.1| sensor histidine kinase [Streptococcus suis SC84]
 gi|251817685|emb|CAZ55433.1| sensor histidine kinase [Streptococcus suis BM407]
 gi|251820150|emb|CAR46487.1| sensor histidine kinase [Streptococcus suis P1/7]
 gi|292558662|gb|ADE31663.1| Pas [Streptococcus suis GZ1]
 gi|319758446|gb|ADV70388.1| Signal transduction histidine kinase [Streptococcus suis JS14]
          Length = 449

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 139/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L               + ++S+GV      GRI + N   +        + 
Sbjct: 75  LNDLSEVIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSNPK- 133

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+  +     RY       DL A       D     +  L L ++     S   L 
Sbjct: 134 QEQYHLLEVLDLSDRY----TLRDLLAQTPEIVIDHTNENEEFLTLRANFATIRSESGLI 189

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   ++   ++T+  + ER               +  FV +VS+ELR+PLT++  + + L
Sbjct: 190 SG-LVVVLHDMTEQAKEERE--------------RRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    S    +V+     +  ++ ++ D+L L+ +D  + +++   I     +  +
Sbjct: 235 DEGAL--TESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFI 292

Query: 655 KQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   +   +    I             D  ++ Q+   IL+NA+ +S  G T+   
Sbjct: 293 LNRFDQMKNADSDKVYTIVRDYQISPIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I SV + G  IP+     +F+RF          + G GLGL+I +  +  H 
Sbjct: 353 MKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGHGSTFTIVLP 432


>gi|119493632|ref|ZP_01624281.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119452552|gb|EAW33736.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 936

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 134/277 (48%), Gaps = 8/277 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHV 576
            LL    + +S  P     +++          +E  + L +  +    A++ K+ F+ ++
Sbjct: 431 RLLEKQPIYWSKSPAIELASLMRNFQQMAETLSEKFQELQKAKQDAEVANQAKSRFLANM 490

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL  I+GF  L       +L   Q +Y++ I  S+  LL L+N++LDLA ++AG
Sbjct: 491 SHELRTPLNAILGFIQLF--DYQSNLTQTQQEYLQTIRYSAEHLLELINEVLDLAKIEAG 548

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKIL 695
              +N +   L+ L N++    + +   + + ++V  +  +  +   D ++L QI   ++
Sbjct: 549 KTIVNSAHFDLHLLFNQLYAMFSQRCEAHGLFLQVHWEDNVPQYLHGDDRKLRQILINLV 608

Query: 696 SNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
            NA+ F+  GS TV  +   +       V + G  I  +  +++F  F    H   + G 
Sbjct: 609 GNAVKFTQAGSITVQARCLSNQRRMQIDVTDTGQGIAPEDLEAIFASFTQTQH--NQEGT 666

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGL+I + F  L GG++++ S     TT    IP +
Sbjct: 667 GLGLTISQQFARLMGGNLTVQSQFGQGTTFTLEIPIE 703


>gi|323498773|ref|ZP_08103759.1| sensor histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323316135|gb|EGA69160.1| sensor histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 1142

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 173/413 (41%), Gaps = 32/413 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +  L+      +  G  I ++    +       G          +  E+ +   +  + 
Sbjct: 656  RYLELFTFPVGLIQVGRPIADVIRHNAEQGLCGPGDPEEHVRRRVYHLEQGTRHTSSRVR 715

Query: 522  SD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
             D  V+E    P+P    +++F ++T    AE+AL E NE+L +                
Sbjct: 716  PDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKEANESLEERVHKRTQELENLNKQL 775

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                       + K+ F+  VS++L  PL     F   L          K SQ++E    
Sbjct: 776  VAATQRSEHESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEEETQKLSQHIESALG 835

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L+ D+LD++ +++G + +N     +ND+L+ +    +    +  I  +++   
Sbjct: 836  AAE---DLIGDLLDISRLESGKLDVNVHAFAINDVLSNLNAEFSALAKQQGIDFEMV--P 890

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  +D + L ++    L+NA  ++ KG  V+L   R NG     V +NG+ I ED  
Sbjct: 891  SQLIVQSDPKLLRRVVQNFLTNAFRYNPKG-KVVLGVRRVNGQARIDVWDNGTGIDEDKQ 949

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F   +     +G+GLGL+I +   ++ G  +S+ S     +  +  +
Sbjct: 950  QEIFEEFTRGSQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPGQGSVFSITL 1002



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+   +  +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFTFPVGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++               +  +  ++   +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCGPGDPEEHVRRRVY-HLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKEANESLEE 759


>gi|309792218|ref|ZP_07686690.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308225759|gb|EFO79515.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 726

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 155/371 (41%), Gaps = 29/371 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRN 482
           +L T+      +    +  + +G+ V    G + ++NP A+++L K++    + G  +R+
Sbjct: 369 ELHTRLEHQQAMLQAVVRDIGDGLIVVDAQGAMVIANPVAYQTLQKSD----AHGDRLRD 424

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                S+         +   +    DD++++ Q    L+                     
Sbjct: 425 DLDRMSQELRAHPQALIQREVHFGEDDQQRAYQIFASLV--------------------- 463

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKN-SFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
               D   +  AL   + + +K  E +   F+  VS+ELR+PL  + GF  ++   K G 
Sbjct: 464 HTEADDDASYVALVIHDISDQKLQERRQFEFISMVSHELRNPLNTLNGFLKVVLQGKAGP 523

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN  Q +++      +  L   + ++L+   +++G ++L      L DLL         +
Sbjct: 524 LNELQQEFLGLADGQADALKGRITELLEYNRLESGRLRLQPQWSDLADLLLRTSTRFQIQ 583

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +  + I+      +   + D +R+ Q+ + ++ NAM  +  G  + L+A       + 
Sbjct: 584 AEQFGLTIETAIPTNIPEVLMDPERIGQVLTNLIENAMKATPAGGKIALRALVQEQYVLV 643

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG--VGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  IPE+  + +F+RF    H     G  +GLGLSI +  +  H G + + S+  
Sbjct: 644 QVADTGVGIPEEQREKIFSRFYRLEHTSSLHGVHLGLGLSICQQIVEGHNGRIWVESAVA 703

Query: 780 GVTTINCRIPS 790
             +  N  +P 
Sbjct: 704 QGSCFNFTLPL 714


>gi|70730557|ref|YP_260298.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344856|gb|AAY92462.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 945

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 150/371 (40%), Gaps = 35/371 (9%)

Query: 431 TLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                  + I      + V    DGR+ L N          +  L  G+    + +    
Sbjct: 342 ESEAFSRDVIQIAPVALCVLRRSDGRVVLENT-------LSQQWLGNGSERDQLCSGW-- 392

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD-- 547
                        I  +FD  R +     E      L  S  P       + F   +D  
Sbjct: 393 -------------IEQAFDPARPNSSDYFETADGRHLYLSSAPTRYNGEDVLFCAFSDIS 439

Query: 548 -SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              + E AL E       A+E K  F+  +S+E+R+PL  ++G  +LL  ++   L+++Q
Sbjct: 440 ARKQIEAALEEAKRLADTANEAKTLFLATMSHEIRTPLYGVLGTLELLSRTQ---LDNQQ 496

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ I  SS  LL L+ D+LD++ ++AG + L  S     DL++E+ Q  A       
Sbjct: 497 KDYLQAIEGSSGTLLQLICDVLDVSKIEAGQLALELSEFSSLDLVHEIIQGYAAAAQAKG 556

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD---FIF 721
           ++     D +L    + D  R+ QI S +L+NA+ F+  G  V  ++    +G+    ++
Sbjct: 557 LQFYACVDPQLPEILLGDVTRIRQILSNLLNNAVKFTDTGRIVLRVRTESRDGERSNILW 616

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V + G  I +D    +F  F           G GLGL I +    L  G++ + S    
Sbjct: 617 QVSDTGRGIAQDDQTLIFEPFYQTEGNTNVIAGTGLGLPICQRLTQLMNGNIRMVSELGL 676

Query: 781 VTTINCRIPSK 791
            ++    +P +
Sbjct: 677 GSSFTLTLPLE 687


>gi|28900530|ref|NP_800185.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365411|ref|ZP_05777948.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030]
 gi|260877477|ref|ZP_05889832.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034]
 gi|260894852|ref|ZP_05903348.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466]
 gi|28808910|dbj|BAC62018.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085317|gb|EFO35012.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466]
 gi|308090921|gb|EFO40616.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034]
 gi|308114304|gb|EFO51844.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030]
          Length = 988

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 113/238 (47%), Gaps = 7/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S  
Sbjct: 460 RNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDS---GLNPIQKRYAEIINRSGK 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD + ++AG +++      L+ ++ +  Q + ++  E  +      +  + 
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
            +   D  R+ Q+ + ++ NA+ F+  G   + +     D    +F V + G  I +   
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 636

Query: 736 KSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K++F+ F        Q  G GLGL+I +  +   GG + + S +   +     IP +E
Sbjct: 637 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEE 694


>gi|293372986|ref|ZP_06619355.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632054|gb|EFF50663.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 623

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 109/543 (20%), Positives = 214/543 (39%), Gaps = 44/543 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E GN   Y I  V +    A      S    +         I   L + I ++D +  
Sbjct: 101 TDEDGNEIIYGISEVQDGPDMA------SAYQALQYSERLLSNIFKYLPIGIELYDMDGV 154

Query: 328 LQFHNRSFVELWEID--LAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKE--NIFSVY 382
           L   N   +E++ I+     L  N  ++ +  + ++   K  E  ++    +   + S Y
Sbjct: 155 LVDLNDKELEMFHIEKKEDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYY 214

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           ++++       +    TL+   + +     + +  + T       K     +      D+
Sbjct: 215 QNTQKQGTIDLMTKVTTLYN--SEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDY 272

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G A F       LS   +           +  T + +I  T   ++ +       A 
Sbjct: 273 AKVGYAHFN-----ILSGHGYAQKSWYRNVGEADETPLSDIFGTYRHFHPDDR-----AL 322

Query: 503 IITSFDDERKSLQGTLE-----LLSDSVLEYSIIPL---------PNAQTMLTFVNVTDS 548
           +I   DD RK L   L      L  D    ++ + L            + +    ++T+ 
Sbjct: 323 LIRFLDDARKGLTTKLSKEMRVLREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITEL 382

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++  +     + 
Sbjct: 383 KRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENAAEKELYNS 442

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            + + +     L+N   D++DL+ +++G ++L    + L +LL+E     A ++    + 
Sbjct: 443 LIGHNNKLLLNLIN---DVIDLSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVE 498

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +             D+ R+ QI S  LSNA+  ++ G  V +    D+      VK+ G 
Sbjct: 499 LLTNYPAHDSLVELDKLRIKQILSNFLSNALKNTTTGH-VEVFYEVDHQSVRIGVKDTGR 557

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP++M + +F RF       Q  G GLGL I +  +    G + + S     TT    +
Sbjct: 558 GIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIEL 615

Query: 789 PSK 791
           P +
Sbjct: 616 PCR 618


>gi|229514004|ref|ZP_04403466.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           TMA 21]
 gi|229349185|gb|EEO14142.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           TMA 21]
          Length = 785

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|257792718|ref|YP_003183324.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|317489005|ref|ZP_07947532.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325831168|ref|ZP_08164492.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|257476615|gb|ACV56935.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|316911872|gb|EFV33454.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325487089|gb|EGC89535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 908

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 158/384 (41%), Gaps = 28/384 (7%)

Query: 422 QVDLETKYNTLVKVQGETI-DHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +  L  +   ++    E + D +   V ++ P DG++         +     +       
Sbjct: 335 RRRLREQNVAMLGQLYEALSDSIDMAVNLYSPTDGKVTPIVAKAERIIGYRLDAFLQNER 394

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPL- 533
           +              +G  LF  I    D+ +   QG     S          YS+  L 
Sbjct: 395 LAATIGLS------PEGVALFDRIRK--DETKGFEQGEFSFRSKQTGKECWASYSVKRLT 446

Query: 534 --PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                Q ++   +VT     + ++ +  +    A+  K+ F+  +S+E+R+P+  I+G  
Sbjct: 447 FEDKPQLLVVMRDVTADKEIQLSMKDAMDVAEAANAAKSEFLSRMSHEIRTPMNVILGTL 506

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L +++       K ++ ++ I  +S  LL L+ND+LD++ ++ G M L      L+ +L
Sbjct: 507 QLARSNP--DDREKVAETLKKIGDASDHLLGLINDVLDISKIENGKMTLASEPFRLSAVL 564

Query: 652 NEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + V  ++  +  +      V +       FV D +R+ Q+   +L+NA+ ++  G  V  
Sbjct: 565 SHVASAVRVQCEQRAQEFVVTTPPCADAVFVGDARRIKQLLLNLLTNAVKYTPCGGCVRF 624

Query: 711 KAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           +     G         F+V +NG  + E+  + +F  F       + +G GLG+ IV++ 
Sbjct: 625 ETTVAKGAAMGYRQVKFTVSDNGIGMSEEFKEHIFEPFSMEGRSRE-QGTGLGMPIVKNI 683

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           + +  G +++ S+    TT     
Sbjct: 684 VTMMAGDIAVESTKGQGTTFTVTF 707


>gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 964

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 174/387 (44%), Gaps = 21/387 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTE 470
             WM+  + + +  E       +      +     + + G  DGR++  N A +  +K  
Sbjct: 155 LAWMWRTVALSIQRE---RLSERSTRAIFEAAPFPMILAGIKDGRVRRLNQAAQQFFKVG 211

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLELLSDSVLEY 528
            +   P ++  +      + +N         A +   + E + L+   +  L+S   L  
Sbjct: 212 GD--LPVSYPASALFLDQQAFNVIRRRLQNGASVRHKEYEVRDLEEHASWSLVSAYALNK 269

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           ++     A  +L F  +T   + +  L    E   +A   K++F+ ++S+E+R+P+ ++I
Sbjct: 270 NV---GEALMVLGFAEITTLKKVQADLLLAKEQAEEATRAKSAFLANMSHEIRTPMNSVI 326

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+ L   +   +L+ +QS Y+  I  S+  LL L+ DILD + ++AG + +      L+
Sbjct: 327 GFSHLALKT---NLDKQQSDYLNKILFSARSLLGLIGDILDFSKIEAGKLTVESLPFTLD 383

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
           ++L+ V    A +  E  + +       L  + + D  RL Q+ + ++SNA+ F+++G  
Sbjct: 384 EMLDSVAALNANRAEEKGLDLIFSHSSNLPQALIGDPLRLGQVLTNLVSNAVKFTTEGHV 443

Query: 708 -VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
            V+++            FSV ++G  +  +    +F  F      H  +  G GLGL+I 
Sbjct: 444 QVLVEPLHQQEQELLLKFSVIDSGMGMSSEQVSLLFTPFTQVDVSHTRRFGGTGLGLAIC 503

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
            + + + GG +S+ S ++  +     I
Sbjct: 504 RNLVEMMGGSISVRSQEQVGSHFEFTI 530


>gi|86145892|ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222]
 gi|85836347|gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222]
          Length = 1223

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L    +    A+  K+ F+ ++S+E+R+P+  IIG + L   +    L   Q  Y+  
Sbjct: 464 HSLAAARDEADAANHAKSDFLANMSHEIRTPMNAIIGMSYLALKT---DLTKAQRNYIHK 520

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  SS  LL L+NDILD + ++AG + +      L ++L+ +   +  +  +  + + + 
Sbjct: 521 VKLSSDTLLGLINDILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQ 580

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D  + +  + D  RL QI   + +NA+ F+ KG   + +  A   GD     F+V ++G
Sbjct: 581 VDRDVPTNLIGDPLRLGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSG 640

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + ++    +F +F        R   G GLGL+I +    L GG + +S+     +T +
Sbjct: 641 IGMKQEQASKLFTKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVSTELGKGSTFS 700

Query: 786 CRI 788
             I
Sbjct: 701 FTI 703


>gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1046

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 3/241 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            +   +  L   D +K+ F+ + S+ELR+PL  II     +        N  Q   +  I
Sbjct: 430 EVENLSRRLLTLDGLKDEFLANTSHELRTPLHGIINIAQSMLDRYGAQFNEPQKHNLALI 489

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 L  L+NDILD + +  G + LN   + +   +N V + +   + +  ++     
Sbjct: 490 VNVGRRLSYLINDILDFSNLKNGRLALNRRPVNVQTAVNSVLEVLGHNVGKKKLQFVKEW 549

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L    AD  RL QI   +L NAM F+ +G  +++ A   N +   SVK+ G  I  D
Sbjct: 550 PNSLPKVDADEDRLNQILYNLLGNAMKFTEEGE-IVISAKVRNREMEISVKDTGPGIAPD 608

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F   A+   +   G GLGL I    + LHGG++ + S     +T    +P  
Sbjct: 609 HLSHIFEPFNRGANAEDKGYSGTGLGLGITRRLVELHGGYIRVESRLGKGSTFYFTLPLA 668

Query: 792 E 792
           E
Sbjct: 669 E 669



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 124/368 (33%), Gaps = 66/368 (17%)

Query: 433  VKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            ++V  E +      V      +  ++L N   R      +  +   + I      C R  
Sbjct: 725  LRVLEELLYATGCSVVAVDHAEEALQLLNGRARFDLVITDWMMPEMSGIE----LCRRIR 780

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                  +L   ++T+ D       G +   +D    +   P+ +A+ +   V    ++R 
Sbjct: 781  EGYSLSELPVLLLTARDLPGDIHAGFMAGAND----FLRKPV-DAEELKARVRTLLNMRN 835

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                  ++E      +IK  F+ +        L  I+        S +     K ++   
Sbjct: 836  SAEEAVRSEMAFLQAQIKPHFLYNA-------LNVIV--------STVAVDPDKAAEL-- 878

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYST--IVLN---DLLNEVKQSIATKMHENN 666
                           +++L+    G          + L    +L+         +  E  
Sbjct: 879  ---------------LMELSQYLRGSFDFQNRENTVPLCKELELVESYVALEKARFEER- 922

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS----SKGSTVILKAARDNGDFIFS 722
            +++ +     + S +     +  I    + NA+       + G TV +    D  DF+ S
Sbjct: 923  LQVTIEVGRNIRSLIP-PLSIQPI----VENAIRHGVMQRATGGTVRVIVQEDGADFVVS 977

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL-SIVESFINLHGGHVSISSSDEGV 781
            V ++G  IP +  + +           +     +GL +I    I+++G  + I S+    
Sbjct: 978  VTDDGVGIPPERLQQL--------LSEEHVSSSVGLRNIHRRLIHMYGEGLRIESNPMQG 1029

Query: 782  TTINCRIP 789
            TT++ R+P
Sbjct: 1030 TTVSFRVP 1037


>gi|295084438|emb|CBK65961.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 610

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 109/543 (20%), Positives = 214/543 (39%), Gaps = 44/543 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E GN   Y I  V +    A      S    +         I   L + I ++D +  
Sbjct: 88  TDEGGNEIIYGISEVQDGPDMA------SAYQALQYSERLLSNIFKYLPIGIELYDMDGV 141

Query: 328 LQFHNRSFVELWEID--LAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKE--NIFSVY 382
           L   N   +E++ I+     L  N  ++ +  + ++   K  E  ++    +   + S Y
Sbjct: 142 LVDLNDKELEMFHIEKKEDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYY 201

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           ++++       +    TL+   + +     + +  + T       K     +      D+
Sbjct: 202 QNTQKQGTIDLMTKVTTLYN--SEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDY 259

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G A F       LS   +           +  T + +I  T   ++ +       A 
Sbjct: 260 AKVGYAHFN-----ILSGHGYAQKSWYRNVGEADETPLSDIFGTYRHFHPDDR-----AL 309

Query: 503 IITSFDDERKSLQGTLE-----LLSDSVLEYSIIPL---------PNAQTMLTFVNVTDS 548
           +I   DD RK L   L      L  D    ++ + L            + +    ++T+ 
Sbjct: 310 LIRFLDDARKGLTTQLSKEMRVLREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITEL 369

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++  +     + 
Sbjct: 370 KRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTESAAEKELYNS 429

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            + + +     L+N   D++DL+ +++G ++L    + L +LL+E     A ++    + 
Sbjct: 430 LIGHNNKLLLNLIN---DVIDLSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVE 485

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +             D+ R+ QI S  LSNA+  ++ G  V +    D+      VK+ G 
Sbjct: 486 LLTNYPAHDSLVELDKLRIKQILSNFLSNALKNTTTGH-VEVFYEVDHQSVRIGVKDTGR 544

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP++M + +F RF       Q  G GLGL I +  +    G + + S     TT    +
Sbjct: 545 GIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIEL 602

Query: 789 PSK 791
           P +
Sbjct: 603 PCR 605


>gi|66043534|ref|YP_233375.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63254241|gb|AAY35337.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 595

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 148/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGH---------SLGEALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
 gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
          Length = 1963

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 26/315 (8%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              A +    DE +  Q  L+  +  + E + + +   Q     V   +   A + L E+ 
Sbjct: 1304 LTAQLKDRSDELEQRQKALQESNAELEEKAALLVR--QNSDIEVKNGEIENARQVLEERA 1361

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ E I  + + 
Sbjct: 1362 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFAETIYGAGSD 1421

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M+++ + I L  L++ V+ +      E N+   V    +L  
Sbjct: 1422 LLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPA 1481

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---------------------AARDNG 717
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         D  
Sbjct: 1482 TLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGK 1541

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               FSV + G  I E   + +F  F         +  G GLGLSI      L GG +   
Sbjct: 1542 MIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQ 1601

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1602 SQPGRGSTFTLYLPL 1616


>gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii
           5216-82]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863]
 gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509]
 gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_7v]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|254292589|ref|YP_003058612.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
 gi|254041120|gb|ACT57915.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
          Length = 943

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 129/304 (42%), Gaps = 20/304 (6%)

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
           N+ D  +  AA     +DE   L      + D + E           +       +    
Sbjct: 207 NQFDTRETNAAAFVKREDETAQLARAFTDMMDKIKE-------RDDKLADHRASLERTVE 259

Query: 552 ERAL--TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           ER        E    A+  K+ F+  +S+E+R+P+  ++   ++L      +L+ +  +Y
Sbjct: 260 ERTHDYRMAKEDAEAANAAKSDFLATMSHEIRTPMNGLLVMAEMLS---AANLSMRHRRY 316

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E IS S   LL ++NDILDL+ +++G + L  +    + ++ ++      K   NN+ I
Sbjct: 317 AEIISRSGKSLLTIINDILDLSKIESGKLDLETAPFEPDAMVEDIACLFWEKARSNNVEI 376

Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG----DFIFSV 723
              IS     S + D  RL Q+ + +++NA+ F+ KG   + +    +           V
Sbjct: 377 ATYISPNTPQSILGDVTRLNQVVTNLVNNALKFTEKGGVEIRVDGRLNKNGQRVRLRIDV 436

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP D    +F  F        R   G GLGL++ +  ++  GG V ++S++   
Sbjct: 437 IDTGIGIPADRLDQIFEAFSQADQSTTRKFGGTGLGLAVCKRLMHAMGGDVKVASAEGKG 496

Query: 782 TTIN 785
           +   
Sbjct: 497 SCFT 500


>gi|222147978|ref|YP_002548935.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734966|gb|ACM35929.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 599

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 3/257 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A   +  ++  +  +  + L + +  L+ A+E K+ F+  VS+ELR+PL  I+GF+D+L 
Sbjct: 243 AGIFVQMLDCREQQQMAQRLVKLDADLQTANEAKSRFLAAVSHELRTPLNAILGFSDILM 302

Query: 596 TSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               G + + +  +YV  I  S   LL++VN +LD+  ++AG  +L      L+  +++ 
Sbjct: 303 GDYFGRMEDERHREYVRLIRQSGGHLLSVVNTMLDMCRIEAGRYELLVEPFSLSQAIHDC 362

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +  +A +  E  +++       +    AD + + QI   ++ NA+ F+  G  V + AAR
Sbjct: 363 ENMLALQAQEKGVKLTSRIGRDVSELTADPRAVRQILINLVGNAIKFTEPGGVVTVDAAR 422

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
              D + SV + G  I +D    +   FV       R+  GVGLGLS+V+  + LHGG  
Sbjct: 423 FGKDLVISVSDTGIGIAQDRILLLGQPFVQVDSDYNRKFDGVGLGLSLVKGLVALHGGTF 482

Query: 773 SISSSDEGVTTINCRIP 789
            ++S +   T ++  +P
Sbjct: 483 LLTSREGEGTVVSITLP 499


>gi|189345724|ref|YP_001942253.1| histidine kinase [Chlorobium limicola DSM 245]
 gi|189339871|gb|ACD89274.1| histidine kinase [Chlorobium limicola DSM 245]
          Length = 231

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 1/223 (0%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +KN F+  VS+ELR+PL +I+GFT  L   +       + +++  I   S  L  L+ D+
Sbjct: 1   MKNDFISTVSHELRTPLFSILGFTGTLLREQDELERETRMEFISIIHDESKRLSALIEDV 60

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L ++ +D+G +    S +  +  ++EV +S+  +  E NI +++     +    AD+  L
Sbjct: 61  LMISKIDSGRVSYKKSELDPSITVSEVCRSLKIRADEKNIDLRLRVCAPMEHIFADQDSL 120

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   I+ NA+ F+  G  V +    +     FSV++NG  IP +  + +F +F     
Sbjct: 121 KQVAINIIGNALKFTPPGGVVQVSLFCEAQTMCFSVEDNGPGIPAEEAEKIFEKFFRVER 180

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G+   G GLGLSIV+  +  H G V + S     T    R+P
Sbjct: 181 PGEAVDGTGLGLSIVKEIVAAHDGTVEVKSVPNQSTVFMVRLP 223


>gi|219667804|ref|YP_002458239.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
 gi|219538064|gb|ACL19803.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
          Length = 614

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 148/385 (38%), Gaps = 38/385 (9%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G        L+ ++        L +    +TID L+EG+     +G     NP+ + ++ 
Sbjct: 254 GELAHSLNYLSARLSETISALELERNRLKQTIDGLAEGIVAIDNEGNFTHINPSIQRIFG 313

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                       +N            + W+ F A++       +SLQ         +L  
Sbjct: 314 ------------KNPGEGRMSLIPSQELWEDFDAVLAQGYTIVRSLQ-----WKQMLLRV 356

Query: 529 SIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +I PL +     A  +  F ++T+S R E              + +  +V +VS+ELR+P
Sbjct: 357 TICPLEDETHHIAGVVGLFRDITESERLE--------------QTRREYVANVSHELRTP 402

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           ++ +   ++ L    +    +K ++Y  ++   +  L  L+ND+L L+ + +   +++  
Sbjct: 403 VSALRALSETLADGMVSDEETK-NRYYNHMLHETMRLTRLINDLLTLSRLQSHTEQVHTE 461

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             ++N++   V +       +  +R            +++   + Q+   +L NA+ ++ 
Sbjct: 462 AFLINEVTGSVAERYKPLAQKKGLRFDYSPLVHDLKVMSNMDLVEQVLIILLDNAIKYTQ 521

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
            G  + L    D      SV + G  I  +    +F RF         +G GLGL+I   
Sbjct: 522 SGGRISLGTVLDKDRVKVSVADTGMGIAPEDLPHIFERFYKADKAHSTQGTGLGLAIAFE 581

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
                G  + + S     +T    +
Sbjct: 582 ISQRLGEEIYVESHLNEGSTFTFTL 606



 Score = 44.2 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 28/256 (10%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +  +     + +  L   I   D        N S   ++         NP    +    
Sbjct: 273 ALELERNRLKQTIDGLAEGIVAIDNEGNFTHINPSIQRIFG-------KNPGEGRM---- 321

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
              + +P Q  W+ +   +   Y    + +    L       +   ++   G + +F ++
Sbjct: 322 ---SLIPSQELWEDFDAVLAQGYTIVRSLQWKQMLLRVTICPLEDETHHIAGVVGLFRDI 378

Query: 420 TVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           T    LE             ++     +  LSE +A    DG +       R        
Sbjct: 379 TESERLEQTRREYVANVSHELRTPVSALRALSETLA----DGMVSDEETKNRYYNHMLHE 434

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +     I ++  T SR  + ++     A +I             L        +YS  P
Sbjct: 435 TMRLTRLINDLL-TLSRLQSHTEQVHTEAFLINEVTGSVAERYKPLAQKKGLRFDYS--P 491

Query: 533 LPNAQTMLTFVNVTDS 548
           L +   +++ +++ + 
Sbjct: 492 LVHDLKVMSNMDLVEQ 507


>gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|262195305|ref|YP_003266514.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262078652|gb|ACY14621.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 2107

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 144/320 (45%), Gaps = 19/320 (5%)

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            + AT        +       +      +++ LQ T E L +   + +       Q     
Sbjct: 1329 VVATIEATMRTDELLRQSRNLAEELTTQQEELQQTNEELEEKARQLT------EQKSEVE 1382

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                    A + L EK E L      K+ F+ ++S+ELR+PL +++  +  L T++  +L
Sbjct: 1383 RKNQQVELARQELEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILSRQLATNRDNNL 1442

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + KQ +Y   I  S   LL+L+N+ILDLA +++G M +  S++  + L + V++      
Sbjct: 1443 SDKQVEYASTIHQSGADLLSLINEILDLAKIESGTMAVEVSSVSFSQLSDYVERLFRQVA 1502

Query: 663  HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARD 715
             E+ +  ++    +L  +   D QRL Q+   +LSNA  F+ KG      STV  +A  D
Sbjct: 1503 DESGVVYQIECADELPAAIETDEQRLRQVLRNLLSNAFKFTKKGEVMLRMSTVKPEADGD 1562

Query: 716  NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
             GD      FSV + G  IP+D  + +F  F         +  G GLGLSI      L G
Sbjct: 1563 YGDEPFLVAFSVSDTGIGIPKDKQRIIFEAFQQADGGTSRRFGGTGLGLSISREIAELLG 1622

Query: 770  GHVSISSSDEGVTTINCRIP 789
            G + + S     +T    +P
Sbjct: 1623 GELDVESEPGRGSTFTLYLP 1642


>gi|237716267|ref|ZP_04546748.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407872|ref|ZP_06084420.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229443914|gb|EEO49705.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354680|gb|EEZ03772.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 628

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 109/543 (20%), Positives = 213/543 (39%), Gaps = 44/543 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E GN   Y I  V +    A      S    +         I   L + I ++D +  
Sbjct: 106 TDEDGNEIVYGISEVQDGPDMA------SAYQALQYSERLLSNIFKYLPIGIELYDMDGV 159

Query: 328 LQFHNRSFVELWEID--LAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKE--NIFSVY 382
           L   N   +E++ I+     L  N  ++ +  + ++   K  E  ++    +   + S Y
Sbjct: 160 LVDLNDKELEMFHIEKKEDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYY 219

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           ++++       +    TL+   + +     + +  + T       K     +      D+
Sbjct: 220 QNTQKQGTIDLMTKVTTLYN--SEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDY 277

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G A F       LS   +           +  T + +I  T   ++ +       A 
Sbjct: 278 AKVGYAHFN-----ILSGHGYAQKSWYRNVGEAYETPLSDIFGTYRHFHPDDR-----AL 327

Query: 503 IITSFDDERKSLQGTLE-----LLSDSVLEYSIIPL---------PNAQTMLTFVNVTDS 548
           +I   DD R  L   L      L  D    ++ + L            + +    ++T+ 
Sbjct: 328 LIRFLDDARNGLTTQLSKEMRVLREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITEL 387

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++  +     + 
Sbjct: 388 KRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENAAEKELYNS 447

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            + + +     L+N   D++DL+ +++G ++L    + L +LL+E     A ++    + 
Sbjct: 448 LIGHNNKLLLNLIN---DVIDLSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVE 503

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +             DR R+ QI S  LSNA+  ++ G  V +    D+      VK+ G 
Sbjct: 504 LLTNYPAHDSLVELDRLRIKQILSNFLSNALKNTTTGH-VEIFYEVDHQSVRIGVKDTGR 562

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP++M + +F RF       Q  G GLGL I +  +    G + + S     TT    +
Sbjct: 563 GIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIEL 620

Query: 789 PSK 791
           P +
Sbjct: 621 PCR 623


>gi|229154672|ref|ZP_04282787.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
 gi|228628620|gb|EEK85332.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
          Length = 883

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 465 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 585 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 705 SHIGEGSTFTVYIP 718


>gi|52079902|ref|YP_078693.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52785274|ref|YP_091103.1| KinE [Bacillus licheniformis ATCC 14580]
 gi|52003113|gb|AAU23055.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347776|gb|AAU40410.1| KinE [Bacillus licheniformis ATCC 14580]
          Length = 736

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 121/767 (15%), Positives = 280/767 (36%), Gaps = 62/767 (8%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD---GKDETPEIIGQLHQ 101
           + +  +L  ++N      +++   L +Y  L         + D      +  +   ++ Q
Sbjct: 7   LNESLNLQNQLNRLRKENAKLKADLYQYELLFNGTLDAIFILDKQMNIIKANDAACKILQ 66

Query: 102 RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF-DLVAETQNDCAIKIEGRVS 160
                  +   L F   L      +L++   +  + G +  ++     N     IE   S
Sbjct: 67  SQKKNLLNRSALDF---LHAVPPDELNQNIHRFLERGYAKKEVAIRLDNGSVKYIEFTAS 123

Query: 161 GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
                        +  +++   +  ++ + +  +FK LF      +   D+ G  + AN 
Sbjct: 124 KGIGEDCFFV---VMRDISSKKILERERTINEKLFKDLFHRAVEGIVIFDKQGCFIDANH 180

Query: 221 SYKKNTETEGIVFQKA-----IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
           S+ ++ E E     K      +    K   ++I   +      +      +     G ++
Sbjct: 181 SFCQSFEIEKSELSKLKLSQFVSPENKGRLDKIWNALFRRGKAKGELPVRLR---SGEDR 237

Query: 276 SYKIVRVLNSFGEAGIAI--DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQ 329
            +++    N      ++I  D++++ ++  QL        E+  N   AI + + +  + 
Sbjct: 238 LFELTITSNILNGFYMSIMRDITEKRSMEKQLFKSEERFREVFENAMDAIILMNNDGRIV 297

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N+S  +++E+ +  L      D +    +  + + +Q + K                 
Sbjct: 298 KANQSACKIFELPMDQLLNKKMTDFIDRTDQRYHAIQKQYDQKGEIRAEL---------- 347

Query: 390 DTWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             + + NGQ   +  TS         + +  N++ +  +E +         +  +   +G
Sbjct: 348 -LFRMANGQYKELEFTSKRIMFDSQDLTILRNVSDRKRMEQELRESELKFRKVFNGSMDG 406

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           + +F     I  +NP    +      +L       N+    S Y+ E+            
Sbjct: 407 IVLFNNQYDIIDANPLAGKILSIPLEQLKT----SNLLDVISGYHIENAASPAKTISFEE 462

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            D++   L    + + +   + +II   N   +    +VT+    E  L + +       
Sbjct: 463 MDNDIPFLLSDQKRILEFSFKRNIIQNMN---LAMLRDVTERKELEERLRKSDTLHVVG- 518

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
                    +++E+R+P+T + GF  LLK S     N   + Y   I++    + +++ +
Sbjct: 519 ----ELAAGIAHEIRNPMTALKGFIQLLKGSIQ---NEDHALYFNVITSELKRIESIITE 571

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            L LA   A    + Y    +  ++ +    +  + + +N+++ +  +  +     +  +
Sbjct: 572 FLILAKPQA----IMYEEKNIVKIMQDTMDLLHAQANLDNVQMHLKCEDGIPLIYCEPNQ 627

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           L Q+F  IL NA++    G  V +    + +   I S+ + G  + ED  K +   F   
Sbjct: 628 LKQVFINILKNAIEVMPDGGNVYVSIKPKGDDHIIVSLADEGIGMTEDKLKRLGEPFY-- 685

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               + RG GLGL +    I  H G + + S +   TT +  +P ++
Sbjct: 686 --TTKERGTGLGLMVSYKIIEEHKGKIEVESEEGRGTTFHLTLPIRQ 730


>gi|163846746|ref|YP_001634790.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524558|ref|YP_002569029.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668035|gb|ABY34401.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448437|gb|ACM52703.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 742

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 153/382 (40%), Gaps = 25/382 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----EENRLSP 476
             V L        +     I+ ++EGV +    GR+ L+N A   L        E  L+ 
Sbjct: 355 ANVRLYEDSQHERRKFHTVIESIAEGVLLCDRYGRLTLANQAAHDLLSCATLSFETPLAT 414

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              + ++           D     A    +F D R  +   L   S+    +S  P  N 
Sbjct: 415 VPDLYDLRDLDGNALTPDDLPFTRALRGETFYDYR--VMRRLPDNSERFFSFSGAPAVNE 472

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-K 595
           Q  +    +T              A +K    K+ F+   ++ELRSPL  +  + DLL +
Sbjct: 473 QGEVEGAVITFR---------DITATQKVQRAKDEFLAVAAHELRSPLAAVRSYADLLLR 523

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +    + +    +  +S     +L LV+++LD++ +DAG   L Y  + L  L  +V 
Sbjct: 524 REQQREGDHRDLHGLTILSQQVAHMLRLVDNLLDVSRLDAGQFDLQYQQVNLVGLAQQVI 583

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
                   + ++ ++  ++        D  R+ Q+ + ++SNA+ +S   S + ++    
Sbjct: 584 DQQRPNAGQRDLLLE--AESAELMVTCDAMRIRQVLTNLISNAIKYSPPDSVISVRLRSA 641

Query: 715 -----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
                +    + SV + G  IP +  + VF R+     R    G+GLGL +    + LHG
Sbjct: 642 TLLNNNAPAVLISVSDQGPGIPPEEQERVFQRYYRAPGRRA-EGLGLGLYLSREIVQLHG 700

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + I S +   +T    +P +
Sbjct: 701 GQIWIESREGQGSTFMVLLPVE 722



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 20/173 (11%)

Query: 288 EAGIAI-DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAF 345
           + G AI +V        +    + ++ ++   + + D+   L   N++  +L     L+F
Sbjct: 349 QVGFAIANVRLYEDSQHERRKFHTVIESIAEGVLLCDRYGRLTLANQAAHDLLSCATLSF 408

Query: 346 ---LATNPSNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
              LAT P   +L + L      P+ L + +  +   F        ++    LP+     
Sbjct: 409 ETPLATVPDLYDLRD-LDGNALTPDDLPFTRALRGETF------YDYRVMRRLPDNSERF 461

Query: 402 VIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
              +  P         G +  F ++T    ++   +  + V    +      V
Sbjct: 462 FSFSGAPAVNEQGEVEGAVITFRDITATQKVQRAKDEFLAVAAHELRSPLAAV 514


>gi|333001143|gb|EGK20713.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-272]
 gi|333015782|gb|EGK35119.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-227]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
 gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
          Length = 918

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|284163811|ref|YP_003402090.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
 gi|284013466|gb|ADB59417.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
          Length = 1532

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 108/714 (15%), Positives = 257/714 (35%), Gaps = 51/714 (7%)

Query: 97   GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKAT-EKLRKEGQSFDLVAETQN-----D 150
            G+    I     D    +           +L       L  E  SF++    ++      
Sbjct: 846  GEAFDEIGASADDIVGQTLWERYPSEMAERLEPKFRAALEGEVSSFEMAFHDRDWMAYTV 905

Query: 151  CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
              +  +  + G    +    +        +   + ++L  +      + D++D + +   
Sbjct: 906  PVMDDDDEIFGGMVMV--QEITERKERERKLRERERRLEQYKEYIDEILDAIDDVFYVIG 963

Query: 211  QAGDILWANISYKKNTETEGIVFQKAIGESRKLFK----EEIKKRMISSSALEKNFCETV 266
            + G +   N S    T            E   LF     E+    + +         E  
Sbjct: 964  EDGSLQRWNRSVTDVTGYSDEEIAAM--EPTDLFIDDDVEDALAAIRAGFETGSVNVELT 1021

Query: 267  STLEHGNNKSYK--IVRVLNSFGE---AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI 321
                 G+   ++    R+ + +G    AGI  D++  +     L     I+  +   + +
Sbjct: 1022 VRTNDGDAVPFEFNASRLEDPWGNTVLAGIGRDITDRLEREKHLERYETIVETVNDGVYV 1081

Query: 322  FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA--NKLPEQLNWKTWKENIF 379
             D++      N ++  +   +   L     +  + + + +     + EQ +  T      
Sbjct: 1082 VDEDGRFTMVNETYASMVGYEPDELVGEHVSMVVDDDVSAQVPKLMAEQTDRPT------ 1135

Query: 380  SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               +++    D   +P   T  ++   + R   + +  +++ + + E +     +     
Sbjct: 1136 --LEATVRTADGDRIPAEATFAMLPEDDSRWHRVGVVRDISERKERERRLEESERRYRTL 1193

Query: 440  IDHLSEG-VAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            +++   G V ++  D   I +   AF  L   E+             AT    +++    
Sbjct: 1194 VENFPGGAVGLYDEDLEYIVVGGEAFDDLGIEED---------EVAGATVDERFSDELVA 1244

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            ++       F+ E  + +          +    +PL N    +    V      ER   E
Sbjct: 1245 EIRPYFRAVFEGESNTFEYQAH---GRDVWAHTLPLRNEDDEIFAGMVMAQDVTER--KE 1299

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                L +++E    F    S++L+ PL  +  +  LL+     + +    +++E+    +
Sbjct: 1300 YQRKLEESNERLERFAYAASHDLQEPLRMVTSYLTLLENRYADAFDEDGREFLEFAVDGA 1359

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              +  +++ +L+ + V+       +  + L+D++++V + +  ++ E +  + V     L
Sbjct: 1360 DRMREMIDGLLEYSRVETRGDP--FEPMDLDDIVDDVLEDLQFRIEETDAELTV---EDL 1414

Query: 678  GSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  +L Q+F  +LSNA+ +S  +   + + A R + +++ SV + G  I  +   
Sbjct: 1415 PRVEGDASQLRQVFQNLLSNALTYSGDEPPRIHVGAERRDDEWVISVADEGIGIDPEDQD 1474

Query: 737  SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             VF  F     R +  G G+GL++ E  +  HGG + + S     +T +  +P+
Sbjct: 1475 RVFTIFDRLHSRSEYDGTGIGLALCERIVERHGGEIWVDSEPGEGSTFSVALPA 1528



 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/536 (13%), Positives = 174/536 (32%), Gaps = 41/536 (7%)

Query: 53  KKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLH-QRIDIPQTDTD 111
           + V E  +   E+ +   +Y +L+       +    +D T   +G       D    + +
Sbjct: 296 RDVTERKARERELEESEQRYRTLVDHFPNGAVALVDEDLTYRTVGGSPTDTADATADEIE 355

Query: 112 LLSFENWLKFHHYIKL-SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS 170
                  +      +L  +    L  E  +F+     +      +  R      F  +  
Sbjct: 356 GEPVAEAVPPSLADELVPRYEAALEGESTAFETTVNGRVYDFQLVPVRDDDGEVFAAL-- 413

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWANISYKKNTETE 229
             G+  ++ E   + ++L      ++ L +     +V   D       A          +
Sbjct: 414 --GMSQDVTERRKRERQLEESEQRYRTLMEYFPNGIVTLFDLDLRYELAAGRGFDRIPVD 471

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS-YKIVRVLNSFGE 288
              F+      R+++ +E    +        +  E    LE+ +     ++V + +  G+
Sbjct: 472 PADFEG--SHVREVWDDEAADTLQPVFEAALDGEEQSVELEYNDRVWIVRVVPITDERGD 529

Query: 289 A----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAI----FDQNRYLQFHNRSFVELWE 340
                 +A D+++       L  T   L   T A A+    +           +F E ++
Sbjct: 530 VFAGMTMAQDITERKRHEQYLRETTAQLEAATEAGAVGTWEWRVPEDEIVAGETFAETFD 589

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQ 398
           +D        S++  LE +          +    +  I + ++S   ++  + +   +G 
Sbjct: 590 VDPQAAREGVSSERFLESIHED-------DRARVEAKIEAAFESCGEYEAEYRVRTADGD 642

Query: 399 TLHVIVTSN----PRGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
              V+   +      G  +       ++T +   E +     +      D L  GV V  
Sbjct: 643 LRWVVARGHVECDEDGDPVRFPGALTDITERKHAELELQRNNEQLETLFDVLPVGVVVAD 702

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            DGRI+ +N   R +W  +                 +         ++  A +   ++  
Sbjct: 703 ADGRIRQANDTAREIWGGDVFNTDTVAEYERYPVWSADSGERISPEEMTLARVLDGEEVT 762

Query: 512 KSLQGTLELLSD--SVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNE 560
           +     +E       ++    +P+ N     A+ ++T  ++TD   ++R L E  +
Sbjct: 763 EPDIYEIEADDGERRIVRVEGMPVRNERGEVARGVVTLTDITDRRESQRRLEESEQ 818



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/400 (13%), Positives = 126/400 (31%), Gaps = 47/400 (11%)

Query: 165 FLRILSLDGIY----------SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
            +R++ +               ++ E     + L    +  +   ++     W      D
Sbjct: 517 IVRVVPITDERGDVFAGMTMAQDITERKRHEQYLRETTAQLEAATEAGAVGTWEWRVPED 576

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF-------CETVS 267
            + A  ++ +  + +    ++ +   R L       R    + +E  F        E   
Sbjct: 577 EIVAGETFAETFDVDPQAAREGVSSERFLESIHEDDRARVEAKIEAAFESCGEYEAEYRV 636

Query: 268 TLEHGNNKSY------KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TV 317
               G+ +        +     +     G   D+++      +L    E L  L     V
Sbjct: 637 RTADGDLRWVVARGHVECDEDGDPVRFPGALTDITERKHAELELQRNNEQLETLFDVLPV 696

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE--LLEFLRSANKLPEQLNWKTWK 375
            + + D +  ++  N +  E+W  D+    T    +   +          PE++      
Sbjct: 697 GVVVADADGRIRQANDTAREIWGGDVFNTDTVAEYERYPVWSADSGERISPEEMTL---- 752

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLETK 428
             +    + +E         +G+   V V   P    RG     +    ++T + + + +
Sbjct: 753 ARVLDGEEVTEPDIYEIEADDGERRIVRVEGMPVRNERGEVARGVVTLTDITDRRESQRR 812

Query: 429 YNTLVKVQGETIDHLSE-GVAVFGPDGRIKLS-NPAFRSLWKTEENRLSPGTHIRNIAAT 486
                +     IDH    GV +F  +   +++   AF  +  + ++ +      R  +  
Sbjct: 813 LEESEQRYRTLIDHFPNGGVGLFDENLEYQITGGEAFDEIGASADDIVGQTLWERYPSEM 872

Query: 487 CSRYYNESDGWDLFAAIITSFD---DERKSLQGTLELLSD 523
             R   E          ++SF+    +R  +  T+ ++ D
Sbjct: 873 AERL--EPKFRAALEGEVSSFEMAFHDRDWMAYTVPVMDD 910



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 114/364 (31%), Gaps = 34/364 (9%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG----NNKSY- 277
               E E +V      ESR    E +  R ++S    +           G     + ++ 
Sbjct: 93  DAVREAEPVVADDLDAESRFSIPEALTDRDVASGVAVRIGPAEQPWGVLGAYATESHAFL 152

Query: 278 --KIVRVLNSFGEAGIAIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
              +  +       G A++ ++    +         I  +  + + + D +  ++  N +
Sbjct: 153 EADVDFLERVADVLGSAVEHARTRRDLERTERRFEAIFEDPNILVGLLDPDGTVRDINGT 212

Query: 335 FVELWEIDLAFLATN-----PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
            +E  + DL  +        P   E  +      +  E+     + E    + +      
Sbjct: 213 AMEYIDADLEDVTGELFWETPWWGEGSDARDDVKRWTERAAAGEYVEFEADLTRPDG--- 269

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VA 448
             W+  NG    V          I    ++T +   E +     +     +DH   G VA
Sbjct: 270 -EWYTLNGAFRPVTNEEGEVVSVIVSDRDVTERKARERELEESEQRYRTLVDHFPNGAVA 328

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           +   D         +R++  +  +               +     S   +L      + +
Sbjct: 329 LVDEDLT-------YRTVGGSPTDTADATADEIE-GEPVAEAVPPSLADELVPRYEAALE 380

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALR 563
            E  + + T+   +  V ++ ++P+ +        +    +VT+  + ER L E  +  R
Sbjct: 381 GESTAFETTV---NGRVYDFQLVPVRDDDGEVFAALGMSQDVTERRKRERQLEESEQRYR 437

Query: 564 KADE 567
              E
Sbjct: 438 TLME 441


>gi|260221812|emb|CBA30748.1| hypothetical protein Csp_C25110 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 486

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 127/282 (45%), Gaps = 9/282 (3%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIK 569
           + +QG L+    +  +   +    +  +     V +   +ER   L         A+  K
Sbjct: 52  RRMQGRLDREKSARKQAEHLLEEKSLALFQANQVLEQRVSERTAELQAALVQAESANVAK 111

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+E+R+P+   +G T+LLK++    LN++Q+ YV+ I  +   LL+L+NDILD
Sbjct: 112 SRFLAMMSHEIRTPMNGALGLTELLKST---PLNNEQAGYVDNILMAGNALLSLINDILD 168

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLL 688
            + ++A  M+L         ++ +      T+     + + +  D  +      D  RL 
Sbjct: 169 FSKIEAHQMELERIPFNPRQVVQDTLALFRTQAQAKGLVLHLDMDDHVPDHATGDPNRLR 228

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q++  ++ NA+ F+S+G  V +           SVK+ G  +  ++   +F  F      
Sbjct: 229 QVWMNLVGNALKFTSEGE-VRIALLCTPEGLRCSVKDTGIGMSAEVMSQLFEPFKQGDSS 287

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             R   G GLGL I ++ I+  G  + + S+    T  +  +
Sbjct: 288 ISRKFGGTGLGLVICKALIDQMGADLQVQSTPGVGTEFSFTL 329


>gi|301168053|emb|CBW27639.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 593

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 10/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E          +K++F+ ++S+E+R+PL  IIGFT +L   KL +   +Q +Y+    
Sbjct: 206 LVEAKIKAESVANLKSNFLANMSHEIRTPLNGIIGFTGILSDLKLSTEAKEQVRYI---K 262

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  ++NDILD + + AG + +  S   + + +               I +K+  +
Sbjct: 263 ECGESLAAIINDILDFSKISAGKLSIVKSNFNIRNCVLSTIHIFDHITTSRGIDLKIDIE 322

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSS 729
             +   +  D  RL Q+ + ++ NA+ F+ KGS  V +K  + +       F VK+ G  
Sbjct: 323 SDIPDILSGDSLRLKQVLTNLIGNAVKFTEKGSIEVKVKVVQKSDSYFKLQFKVKDTGIG 382

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++    +F  F         +  G GLGLSI +  +   GG +S+SS +   +  +  
Sbjct: 383 IRQEAQARLFYSFEQADVSTSRKYGGTGLGLSISKKLVEAMGGEISVSSEEGVGSEFSFT 442


>gi|218709306|ref|YP_002416927.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio splendidus LGP32]
 gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid
           histidine kinase [Vibrio splendidus LGP32]
          Length = 1223

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L    +    A+  K+ F+ ++S+E+R+P+  IIG + L   +    L   Q  Y+  
Sbjct: 464 HSLAAARDEADAANHAKSDFLANMSHEIRTPMNAIIGMSYLALKT---DLTKAQRNYIHK 520

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  SS  LL L+NDILD + ++AG + +      L ++L+ +   +  +  +  + + + 
Sbjct: 521 VKLSSDTLLGLINDILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQ 580

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            D  + +  + D  RL QI   + +NA+ F+ KG   + +  A   GD     F+V ++G
Sbjct: 581 VDRDVPTNLIGDPLRLGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSG 640

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + ++    +F +F        R   G GLGL+I +    L GG + +S+     +T +
Sbjct: 641 IGMKQEQASKLFTKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVSTELGKGSTFS 700

Query: 786 CRI 788
             I
Sbjct: 701 FTI 703


>gi|254444049|ref|ZP_05057525.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
 gi|198258357|gb|EDY82665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
          Length = 1318

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 130/288 (45%), Gaps = 13/288 (4%)

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            L G   +L+       +  L    T +        V   R L E  E   +A   K+SF+
Sbjct: 754  LIGRFRILALRRSNAKLARLVEESTSVLNEKNEKLVLVNRELKEMAEHAEQAAAAKSSFL 813

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
              +S+E+R+PL  +IG   +L+ +   +L+S Q  Y+E I  S   LL +VNDILD + +
Sbjct: 814  AVMSHEIRTPLNGVIGMCSVLRQT---NLDSMQRDYLESIRVSGLSLLEVVNDILDYSKI 870

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFS 692
            + G + L      L DL+  V   +  K +E  + + ++ D ++      D  R+ QI  
Sbjct: 871  EKGRLSLECILFDLVDLVESVVSLLGLKANEKELDLHLLIDPRIKRLHYGDPTRVRQILY 930

Query: 693  KILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             +L NA+ F+  GS V +        D+   +  V + G  I ED  ++VF  F  +   
Sbjct: 931  NLLGNAIKFTKLGS-VTVSLYPKSGYDSDHLVMEVSDTGVGIEEDKHEAVFEAFAQSDVS 989

Query: 749  --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPSKE 792
               +  G GLGLSI      L GG + + S  +  +T      +P+ E
Sbjct: 990  DVRKFGGTGLGLSICRQLAGLMGGDIELESRLDEGSTFRVSLSLPAAE 1037


>gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 904

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 158/386 (40%), Gaps = 20/386 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGT- 478
            +  +E +      +     D+  +     GPDG  +  +PA   +     E  L PG+ 
Sbjct: 363 ARQQVEARLAEREHIFRIVADNSHDWEFWDGPDGLCRWVSPACARVSGHPAEAFLGPGSL 422

Query: 479 HIRNIAATCSRYYNES--DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            +R++     R   ++  D  +   A+            G +  ++            N 
Sbjct: 423 TVRDLIHPEDRAAWDAHLDSPEALEAVHEELHFRILRADGRVAHIAHVCGRILGPGGENL 482

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  ++T+    ER L    E        K+ F+ ++S+E+R+P+  ++G   LL+T
Sbjct: 483 GRRGANRDITEQHHHERELRRAKEMADAGSRAKSEFLANMSHEVRTPINGVVGMLQLLET 542

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +L  +Q +YV     ++  L  L+ DILDL+ V++G + L  +   L +L   +  
Sbjct: 543 T---ALTEEQQEYVAMAGRAAGRLSRLLGDILDLSKVESGALVLQQTPFELEELRQAILD 599

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                    N+ + V     L    + D  RL QI   ++ NA+ ++  G  V +     
Sbjct: 600 VFGPMARNKNLALSVDLAQALPRRVMGDDVRLRQILLNLVGNAVKYTDSG-FVHVAVFPG 658

Query: 716 NGD----------FIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESF 764
           + D           +F V + G  IP     SVF+ FV      G + GVGLGL+IV+  
Sbjct: 659 DPDSPPREGAPFEVVFVVADTGRGIPGHKLDSVFSPFVQTDPAAGPQGGVGLGLAIVKRL 718

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           + L GG + + S +   T++   +P 
Sbjct: 719 VELMGGRIHLCSVEGQGTSMRAVVPL 744


>gi|227114812|ref|ZP_03828468.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 931

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 12/246 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LN+ Q+ Y+  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTPLNTTQTDYLLTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++ND+LD + ++AG + L      L+  L++V   +A   HE  + + +  
Sbjct: 335 ERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSI 394

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
              +   FV D  R+ QI + +L NA+ F+ +G+  + ++  R           +++ G 
Sbjct: 395 QNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQESHQVQLEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF 514

Query: 787 --RIPS 790
              +P 
Sbjct: 515 HITLPL 520


>gi|187920088|ref|YP_001889119.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187718526|gb|ACD19749.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 1195

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 147/332 (44%), Gaps = 4/332 (1%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            +S+    E  L        +A T           +         ++  ++L  +   L 
Sbjct: 382 AKSMGDFVEAALYRERLQDALAETQQLNEELQVQQEELRVSNEGLEERGRALMESQTRLE 441

Query: 523 DSVLEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               E     +   +         +D +RA+  L      L ++   K+ F+ ++S+ELR
Sbjct: 442 AQQAELEQTNVQLEEYAQRLERQKSDLLRAQDDLAANAARLEQSSRYKSEFLANMSHELR 501

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL + +    LL+ ++ G+L  +Q +Y E I AS++ LL L+NDILDL+ V+AG + + 
Sbjct: 502 TPLNSSLILAKLLQQNRTGNLTEEQVRYAETIHASNSDLLVLINDILDLSKVEAGQVTVE 561

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMD 700
             T+ ++  L  ++++        ++ +      G   +F+ D QR+ QI   +LSNA+ 
Sbjct: 562 LETVSIDATLQALEETFKPLAGARHLSLAFDRLPGTPDTFITDGQRVTQILRNLLSNAVK 621

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGL 758
           F+ +G   +  A  + G   F V+++G  I  D    +F  F         Q  G GLGL
Sbjct: 622 FTERGEVALSVAPAEGGMLRFDVRDSGIGIAADKLDMIFEAFQQADGSTSRQYGGSGLGL 681

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           SI   F  L GG ++++S     +     +P 
Sbjct: 682 SISREFSRLLGGRITVASEVGKGSVFTLWLPL 713


>gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Citrobacter koseri ATCC BAA-895]
 gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895]
          Length = 948

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 104/491 (21%), Positives = 194/491 (39%), Gaps = 53/491 (10%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N          + L     + +   P   +   +        E +  K+
Sbjct: 239 SLPMGVTILDENG------HPLISLTG-PESNIRPEPRWMQERSWFGYTPGFRELVLKKS 291

Query: 374 WKENIFSVYKSSETHKDTWHLP----NGQTLHVIVTSNPRGGTIWMFENLTVQV------ 423
              +  S+  S        H+     N   L+V+V     G  ++    +  +       
Sbjct: 292 LPPSSLSIVYSVPVDLVLEHIRMLILNAILLNVLV-----GAALFTLARMYERRIFIPAE 346

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +     +   + +     G+ +    DG   LSN     L  T  N L+     R 
Sbjct: 347 SDAQRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRL 402

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
               C +  N       F  ++TS +    +LQ +           +I            
Sbjct: 403 TQIICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI---------CVL 443

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    +L
Sbjct: 444 VDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---AL 500

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +
Sbjct: 501 PKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               + +    +  +  +   D  RL Q+ S +LSNA+ F+  G  ++L    D      
Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVQCDGDYLSI 619

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S   
Sbjct: 620 QVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPG 679

Query: 780 GVTTINCRIPS 790
             +    RIP 
Sbjct: 680 MGSQFTLRIPL 690


>gi|221065881|ref|ZP_03541986.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
 gi|220710904|gb|EED66272.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
          Length = 1085

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 150/376 (39%), Gaps = 31/376 (8%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           V+ +   +         I      + V     G I  SN        +E +   P     
Sbjct: 371 VEAQRMIDERDAFNRTLIQTAPVALCVISKASGDILFSNSIALEWLGSESDPPQPLQSNA 430

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP---LPNAQT 538
                  R  +     D                   L + ++  L  S  P   +     
Sbjct: 431 IQILRSLRSVDRPGSMD------------------NLHIDNERTLSVSYTPARYMDGDAV 472

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F +++  V  ERAL     A  +A E K++F+  +S+E+R+PL  ++G  +LL  ++
Sbjct: 473 LCAFTDISTRVEIERALERARSAADEASEAKSTFLSTMSHEIRTPLYGVLGTLELLTATR 532

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+S+Q QYV  I  SS ILL L++DILD++ ++AG +KL        +L+ +   S 
Sbjct: 533 ---LDSQQRQYVNRIEGSSQILLQLISDILDVSKIEAGQLKLERLAFSPRELVQDCTGSY 589

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
           A    +  +      D  +  S   D  R+ QI S ++SNA+ F++ GS ++     D  
Sbjct: 590 AAMAQQKGLLFFSAVDTGIPDSVFGDPVRVRQILSNLISNAIKFTNVGSVIVRCLVVDQP 649

Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHV 772
             +      V ++G  I  +    +F  F          RG GLGLSI      L G  +
Sbjct: 650 PGHVTLQIEVADSGVGIDREEQNRLFTPFYIVDGSRHVVRGAGLGLSICARLAELMGSSM 709

Query: 773 SISSSDEGVTTINCRI 788
            + S  +  +  +  +
Sbjct: 710 QVKSEKQVGSVFSIAL 725


>gi|298375360|ref|ZP_06985317.1| hybrid sensory kinase [Bacteroides sp. 3_1_19]
 gi|298267860|gb|EFI09516.1| hybrid sensory kinase [Bacteroides sp. 3_1_19]
          Length = 793

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/497 (16%), Positives = 187/497 (37%), Gaps = 40/497 (8%)

Query: 321 IFDQNRYLQFHNRSFVELWEID----LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           + D++  L + N  + ++         A     P       +  + N L + +      E
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEEYEALFHNKPDLY-FKGYDEAWNILSKNV-----YE 78

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNTLVK 434
            I +     ET          +   +  T   +   G    +  +T   D+  +      
Sbjct: 79  TIANKASGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIE--- 135

Query: 435 VQGETIDHLSEGVAV---FGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            Q  T D++  G         DG   +  +N  +      ++N     +    +  T   
Sbjct: 136 -QTITYDNIP-GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSRN 193

Query: 490 YYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLE-------YSIIPLPNAQTMLT 541
             N      L    +      + K+  G    L+   +        Y I+ +        
Sbjct: 194 TMNAHIPCMLKGEPVHFVIQSKDKNGNGAWLQLNGECIGWEGDEPIYLIVYINITDITEQ 253

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                   +  + L E  ++  +A++ K+ F+  +S+++R+P+  I+G   + K      
Sbjct: 254 RELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV--D 311

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +    +E I+ +S +LL+L+N++LD++ +++G + L+     + +LL ++   +  +
Sbjct: 312 ERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQPE 371

Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---- 716
           +      + +   + +  +   D QR+ Q+   ILSNA+ ++ +   + ++    +    
Sbjct: 372 IKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKDPHNG 431

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
            G++ F  ++NG  +  +    +F  F   +     + +G GLG+SI    I + GG + 
Sbjct: 432 IGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMGGDIK 491

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +     +P 
Sbjct: 492 VESEYGKGSRFTIDMPL 508



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 122/400 (30%), Gaps = 34/400 (8%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR--------MISSSALE 259
             D+   +LWAN  Y          ++        L+ +   +           + +   
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEEYEALFHNKPDLYFKGYDEAWNILSKNVYETIANKA 84

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE---ILHNLT 316
             +   +        +  KI        + GI I  +    V D +    E      N+ 
Sbjct: 85  SGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQTITYDNIP 144

Query: 317 VAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             I+      D +  L   N  +++   ID     +      L E  R  N +   +   
Sbjct: 145 GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSR--NTMNAHIPCM 202

Query: 373 TWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPRGGTIWM-FENLTVQVDLETKYN 430
              E +  V +S + + +  W   NG+ +       P    +++   ++T Q +L+ K  
Sbjct: 203 LKGEPVHFVIQSKDKNGNGAWLQLNGECIGWEGDE-PIYLIVYINITDITEQRELQKKLE 261

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              K   E +    +       D   ++S+     +            H+          
Sbjct: 262 KQSKQLKEALKSAEQANQA-KSDFLARMSHDIRTPMNAIMGMATIAKAHVDERERILDCM 320

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
              +    L  ++I    D  K   G L L  D   E+++  L     +   +   +   
Sbjct: 321 EKINGASKLLLSLINEVLDMSKIESGRLILSED---EFNVGELLQDLVV---MMQPEIKN 374

Query: 551 AERALTEKNEALRKAD------EIKNSFVQHVSYELR-SP 583
            ++ L    + LR  +       IK   +  +S  ++ +P
Sbjct: 375 KQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTP 414


>gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1424

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 19/344 (5%)

Query: 462  AFRSLWKTEENRLSP--GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             FR + +    +L P  G ++  I A   R     D      A + +  +E +  Q  L+
Sbjct: 756  RFRKIHQDFLAQLMPTIGVNLNTIVANV-RTDELLDESQRLTAELQARSEELQVQQDELQ 814

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              +  + E +   L  +Q            +A + L  + + L  A + K+ F+ ++S+E
Sbjct: 815  RSNAELEEKAS--LLASQNRDIEAKNLQIEQARQELETRAQQLSLASKYKSEFLANMSHE 872

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            LR+PL +++    LL  +   +L  KQ +Y   I ++ + LL L+NDILDL+ V+AG M 
Sbjct: 873  LRTPLNSLLILAQLLAQNPSRNLTPKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMD 932

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNA 698
            +    + L  LL  V+ +      + ++   V  + G     + D  RL QI   +LSNA
Sbjct: 933  VAPERVPLRQLLEYVEATFRPMTTQKSLEFTVATAPGTPADLLTDDSRLRQILRNLLSNA 992

Query: 699  MDFSSKGST-----------VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
            + F+ +G             V     R      F VK+ G  IP+   +++F  F     
Sbjct: 993  VKFTEQGGVELRIEPAADREVPSGVHRGGPIVAFRVKDTGIGIPQQQLETIFGAFQQADG 1052

Query: 747  -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +  G GLGLSI     +L GG V++ S+    +T    +P
Sbjct: 1053 TTSRKYGGTGLGLSITREIAHLLGGAVTVDSTPGQGSTFTLYLP 1096


>gi|196035114|ref|ZP_03102520.1| sensor histidine kinase/response regulator [Bacillus cereus W]
 gi|195992178|gb|EDX56140.1| sensor histidine kinase/response regulator [Bacillus cereus W]
          Length = 896

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|260901217|ref|ZP_05909612.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308106702|gb|EFO44242.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 806

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++    + +   K +F+  +S+E+R+P+  ++G   +L  +    L  +Q +++  + 
Sbjct: 339 LEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLTDEQRKHLSTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G ++ + S   +  ++  +K    T   E  ++ KV S 
Sbjct: 396 DSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQFKVTSL 455

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
             +G +   D+ RL Q+   +L+NA+ F+ +G  V +  +     D    + ++K+ G  
Sbjct: 456 VPVGRWYDNDKARLRQVLFNLLNNAVKFTDRG-IVEVTLSEQTHYDKTVLVIAIKDTGIG 514

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  K +F  F        RR  G GLGL+IV+      GGHV++ S +   TT    
Sbjct: 515 ISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIGTTFTVE 574


>gi|290892560|ref|ZP_06555553.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557869|gb|EFD91390.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 610

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 151/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +      L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTFDKPYVLRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKTKGTIIKFTLP 600


>gi|196037659|ref|ZP_03104970.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
 gi|196031901|gb|EDX70497.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
          Length = 896

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 139/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N++  
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVKFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|84684329|ref|ZP_01012231.1| sensor histidine kinase/response regulator [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668082|gb|EAQ14550.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2654]
          Length = 731

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 210/514 (40%), Gaps = 38/514 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSF-VELWEIDLAFLATNPSNDELLEFLRSA-N 363
           ++    +  +    A+FD +  L   N  F + + +I  AF+     +D +    RS   
Sbjct: 86  SNLANAIETIQEGFALFDPDEKLVMCNSRFGLHMPDIRAAFVPGLDFHDYVQLISRSRFR 145

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           +  +    + W       +K      +   + N + + V     P GGT+ +  ++T  +
Sbjct: 146 EHADSEAPEDWARGRLERHKDDHVIFNVRMIWN-RWVQVSEHRTPDGGTVIIQTDVTDIM 204

Query: 424 DLETKYNT-----LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            LE +          +V   T++ L++GV +F    R+   N     L       +  G 
Sbjct: 205 RLERQERERMLDDQARVIQATLEQLNQGVCIFDAQARLVGWNQRVGELLSMPATLMRMGI 264

Query: 479 HIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               +        + +DG  +            R  +   ++     +L  +   +P+  
Sbjct: 265 RFSTLLDRFRDDISFTDGTTIETVEAWVQMPGGRPPVNFEVKRGPMLILAVTAQEMPDQG 324

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR------------------KADEIKNSFVQHVSYE 579
            +++F +VT    A RA+ + NE L                   +A+  K+ FV   S++
Sbjct: 325 FVISFTDVTAERAAVRAIKDANEMLEARVAERTLALKEALSEAERANASKSRFVAAASHD 384

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L  PL+    +   L+      + +K S+ +E +        ++++ +LD++ +D G   
Sbjct: 385 LLQPLSAAKLYLASLEGEGESPVVAKVSRALESVE-------HILDALLDISKLDIGKAA 437

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L+ + + +  +L ++ + +     +  + ++++S   +    +D   L +I   ++SNA+
Sbjct: 438 LHEAPVSVGTVLAQLGEELMPVARQKGLDLRMVSTSAV--VRSDPTYLRRILQNLVSNAL 495

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGL 758
            ++ +G  V++ A          V + G  IPED  +++F+ F   NA      G+GLGL
Sbjct: 496 RYTDRG-RVLVGARHVPRGVRIEVWDTGPGIPEDQQQAIFDEFRRLNASASAAEGMGLGL 554

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +IVE    L G  ++++S+    T     +P  +
Sbjct: 555 AIVERACRLLGHDLTLTSAPGIGTCFRVTLPLHD 588



 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 80/303 (26%), Gaps = 48/303 (15%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN---------- 219
           +LD + +  A+     ++     S      +++       D    ++  N          
Sbjct: 63  ALDLLNTSNAKLAEANREAEEARSNLANAIETIQEGFALFDPDEKLVMCNSRFGLHMPDI 122

Query: 220 -ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
             ++    +    V   +    R+    E  +               +  +    N+  +
Sbjct: 123 RAAFVPGLDFHDYVQLISRSRFREHADSEAPEDWARGRLERHKDDHVIFNVRMIWNRWVQ 182

Query: 279 IVR-VLNSFGEAGIAIDVSKEITVNDQLTH---------TYEILHNLTVAIAIFDQNRYL 328
           +        G   I  DV+  + +  Q                L  L   + IFD    L
Sbjct: 183 VSEHRTPDGGTVIIQTDVTDIMRLERQERERMLDDQARVIQATLEQLNQGVCIFDAQARL 242

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              N+   EL  +    +        LL+  R               +  F+   + ET 
Sbjct: 243 VGWNQRVGELLSMPATLMRMGIRFSTLLDRFRD--------------DISFTDGTTIETV 288

Query: 389 KDTWHLPNGQ-------------TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
           +    +P G+              L V     P  G +  F ++T +           ++
Sbjct: 289 EAWVQMPGGRPPVNFEVKRGPMLILAVTAQEMPDQGFVISFTDVTAERAAVRAIKDANEM 348

Query: 436 QGE 438
              
Sbjct: 349 LEA 351


>gi|125974417|ref|YP_001038327.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|125714642|gb|ABN53134.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
          Length = 463

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 120/235 (51%), Gaps = 3/235 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + +    ++KN F+  +S+ELR+PLT+I+G+   + +  + S   +  + ++ I 
Sbjct: 231 LNYMAQEVANQQKMKNDFIASISHELRTPLTSIMGWIITINSGDIDS-KEELKEGLDIIE 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L  LV+++LD +  DAGI+ L  S + L +LL  +K+ +  +     I + +  D
Sbjct: 290 RESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDVD 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L    AD  RL Q+F  I+ N+  F+ KG  + +   ++    +  ++++G  IPE+ 
Sbjct: 350 EHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENGVLIRIEDSGCGIPEED 409

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              V  RF   ++     G GLGL+I +  + LH G + I S+    T ++  +P
Sbjct: 410 LPRVKQRFFKGSNVVS--GSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILP 462


>gi|327355100|gb|EGE83957.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ATCC 18188]
          Length = 2401

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ +VS++LR+P+  +IG ++LLK +   SL+ +Q  YV
Sbjct: 1876 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKT---SLDREQDGYV 1932

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + L + + EV +++     +  ++  
Sbjct: 1933 ESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTI 1992

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFS--V 723
               DG   +   + D  RL QIF  +LSN+  F+ KGS V +KA     D G    +  V
Sbjct: 1993 EDLDGVDPNLLVMGDPVRLHQIFMNLLSNSYKFTPKGS-VTVKAKVTDEDEGRIRITCKV 2051

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I  +    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 2052 ADTGIGISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGV 2111

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2112 GTTVTFTL 2119


>gi|323495545|ref|ZP_08100619.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323319426|gb|EGA72363.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 1198

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 116/246 (47%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R    L    +    A+  K+ F+ ++S+E+R+P+  IIG + L   +    L   Q  Y
Sbjct: 462 RFANKLAIARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKT---DLTKAQRNY 518

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S+  LL L+NDILD + ++AG + +      L ++L+ +   +  +  E  + +
Sbjct: 519 IHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFQLENVLDNISNLVGLRASERGLEL 578

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVK 724
            +  +  + +  V D  RL Q+   + +NA+ F+ +G   + +  A  +G+     F V 
Sbjct: 579 LIHIERDVPTALVGDPLRLGQVLINLSNNAVKFTERGEIKITVSVAERSGENIRLKFRVS 638

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  +  +  + +F++F        R   G GLGL+I +    L GG + + S     +
Sbjct: 639 DSGIGMTPEQTQKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVESEAGVGS 698

Query: 783 TINCRI 788
           T +  I
Sbjct: 699 TFSFTI 704


>gi|261406259|ref|YP_003242500.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261282722|gb|ACX64693.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 484

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 124/238 (52%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + + +++++K+ F+  +S+ELR+PLT+I G+++ L +        +    ++ IS
Sbjct: 231 LNYMAQEIVRSNQVKDDFISSISHELRTPLTSIKGWSETLDSGGYDP--EETKIGMQIIS 288

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L+ LV ++LD + +    MKL    + L +LL E+  ++ TK  +  ++IK+ SD
Sbjct: 289 KETDRLIGLVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESD 348

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K      D  RL Q+F  I+ NA+ FS +   + L  A +    I +V+++G  I ++ 
Sbjct: 349 EK-PIIYGDVNRLKQVFLNIVDNAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGISDEH 407

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + V +RF          G GLGL+I +  + LHGG + + S     T +  ++P  E
Sbjct: 408 LRRVKDRFFQVNPLN--GGTGLGLAITQQLVELHGGTMEMESELGHGTAVIVKLPLPE 463


>gi|160936694|ref|ZP_02084061.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440485|gb|EDP18230.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC
           BAA-613]
          Length = 819

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/522 (18%), Positives = 191/522 (36%), Gaps = 59/522 (11%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEID----LAFLATNPSNDELLEFLRSANKLPE 367
           L +++V+  I D+   L + N  + EL         A     P++     ++     + +
Sbjct: 21  LLHVSVSKHILDEYYTLVWCNDYYYELIGYSREEYEALYHNKPAHY----YMNDDLNIHD 76

Query: 368 QLNWKTWKENIFSVYKSSET----------------HKDTWHLPNGQTLHVIVTSNPRGG 411
           +  W      +    +S E                 H   W   N      +      G 
Sbjct: 77  EKLWMQLSARVMETLESGEKSYNLVTRMRRKHNGNHHDYMWVRLN----AYLTDEYVDGY 132

Query: 412 TIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPDGRIKLSNPAFRS 465
            +   +  ++T  +D++ +       Q  T D L   V+ F      D ++  +N  F  
Sbjct: 133 QVSYSVMTDITDVMDMKLE-------QSVTYDSLPGFVSKFRVNRNLDFKLLEANDRFFD 185

Query: 466 LWK-----TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII---TSFDDERKSLQGT 517
            +        +N L     IRN+          ++G  +   +     S +D    +  +
Sbjct: 186 FFGKDSMDGMDNALFRENIIRNMPVFLEHKNAVTNGNSVHFTVQMKNRSGNDAWLQINAS 245

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                +    Y  I +                   + L    E   +A+  K+ F+  +S
Sbjct: 246 CIGYQEGDPVYLAIYIDITNETELRQMQQKLEAQAKELRSALETAEEANRAKSDFLSRMS 305

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +++R+PL  ++G  D+          +K    +  I  S   LL+L+ND+LD++ +++G 
Sbjct: 306 HDIRTPLNAVLGMKDI--AEAHLDDPAKVKDCLRKIGLSGQHLLSLINDVLDMSKIESGE 363

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILS 696
           M L   ++ L ++L  V   +  +  E      +     +   F++D  R+ QIF  ILS
Sbjct: 364 MVLREDSMSLPEVLENVVAIMQPQFGEKEQHFSIRLRSVVHEQFLSDALRMRQIFINILS 423

Query: 697 NAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749
           NA  F+    TV +             F FS+ + G  +  +    +F  F         
Sbjct: 424 NAYKFTPVNGTVSMDVCEKQAVDGTALFRFSITDTGIGMKPEYLAQIFTAFSRERDSRVD 483

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  G GLG++I + F+++ GG + ++S     T     +P K
Sbjct: 484 KTEGTGLGMAITKRFVDMMGGTIEVTSELGKGTCFRVELPLK 525


>gi|154491811|ref|ZP_02031437.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC
           43184]
 gi|154088052|gb|EDN87097.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC
           43184]
          Length = 628

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 141/275 (51%), Gaps = 8/275 (2%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSY 578
           +++  +L    I       +  +   ++  R  +  L E+ E   +A+++K++F+ ++S+
Sbjct: 357 IIAGGILLVIAIVYIILHLIYMYYRESERKRQVQLRLIEEKERAEEANKMKSAFLANMSH 416

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  I+GFT+LL+  K    + ++  +   I+ +S +LL L+NDIL+L+ +++G M
Sbjct: 417 EIRTPLNAIVGFTNLLQDEK-ELTDEEKDLFRNTINKNSNLLLKLINDILELSRIESGRM 475

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              +    LN+LL E+ Q+    M   NIR              DR R  Q+ +  ++NA
Sbjct: 476 SFAFDDCSLNELLEEIYQTHHLLMPS-NIRFLKEFQETELIIHVDRFRFTQVITNFINNA 534

Query: 699 MDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           + F++KG  ++L A   ++  +    V++ G  + E+  K VF RF       Q  G GL
Sbjct: 535 VKFTTKGH-ILLGAVYKKEEKEVHVFVEDTGKGMSEEAQKKVFERFFKVDEFAQ--GTGL 591

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLSI ++      G +++SS +   +     IP +
Sbjct: 592 GLSICQTIAERLEGRITLSSQEGKGSRFTLIIPCR 626


>gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536]
 gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536]
 gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 918

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|119715628|ref|YP_922593.1| PAS sensor protein [Nocardioides sp. JS614]
 gi|119536289|gb|ABL80906.1| PAS sensor protein [Nocardioides sp. JS614]
          Length = 977

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 148/380 (38%), Gaps = 28/380 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL------WKTEENRLSPGTHI 480
            +     +      D+  + + V      I  S+   +                + G  +
Sbjct: 318 AELARSHEYLQALADNSVDAILVVDERLDIVFSSSGVQEYLGPSPRRGLPAWAEAAGLRL 377

Query: 481 RN-IAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            + +    +R     D        ++   +  R  L   + LL D  +   +I L ++  
Sbjct: 378 HDGLEDALARTVAAPDAIVQEEFLLVPEHEKPRWILARFVNLLHDPAVRGIVISLSDS-- 435

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                  T+    E  L    +A       K++F+  +S+E+R+PL  ++G T+L+ T++
Sbjct: 436 -------TERKEMELELGRARDAALAGSRAKSTFLATMSHEIRTPLNGVLGLTELMLTTR 488

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q +Y E I  +   LL ++NDILD + ++AG ++L    + +  LL+E  + +
Sbjct: 489 ---LDGQQGRYAEGIRVAGEALLQVINDILDFSKIEAGRLELEEVDLDVARLLDETARMV 545

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--- 714
           A    E  + + V    ++      D  RL Q+   + SNA+ F+  G  V+        
Sbjct: 546 AGPAQEKGLALVVRCSPEVPPGLRGDAVRLRQVLLNLTSNAIKFTRTGEVVLSAQLERAP 605

Query: 715 --DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
             D     F V + G  I     + +F+ F        RR  G GLGL+I    +   GG
Sbjct: 606 VADVASVRFEVADTGIGIDPAQREHLFDAFTQADSTTTRRFGGTGLGLAISRQLVTAMGG 665

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + +       +     +P 
Sbjct: 666 AIGVEPRSGPGSRFWVVVPL 685


>gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|295097697|emb|CBK86787.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 772

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 153/380 (40%), Gaps = 24/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K   + ++Q           +D   + V     D      N A   L    E 
Sbjct: 129 EQLKVEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 188

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 189 QLIHLKPQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 243

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 244 YYDRVGKRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 301

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++   L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 302 ILLDTE---LTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLA 358

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +   +     L    V D  RL QI   ++SNA+ F+ KG  V ++
Sbjct: 359 DLENLSGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQKG-QVAVR 417

Query: 712 AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD   F V+++G  IP++    +F  +         +   G G+GL++ +     
Sbjct: 418 IRYDEGDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKS 477

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG ++++S     +T    
Sbjct: 478 MGGDITVASQPGKGSTFTLT 497



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  +L+ +  E+ E  +   +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 124 RQTTLEQLKVEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 183

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q    + + ++ EE   +++ +   EK F   VS           G    ++I
Sbjct: 184 GKS--EKQLIHLKPQDVYSEEAAAKVMETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 239

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 240 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 273


>gi|269960268|ref|ZP_06174643.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi
           1DA3]
 gi|269835075|gb|EEZ89159.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi
           1DA3]
          Length = 786

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 155/377 (41%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   + +  ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEVAEHIVDTDQKVF-------ADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 313 ---LTDEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 369

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  + 
Sbjct: 370 ALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEE 429

Query: 717 GDFIF--SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   V++ G  IP++    +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 DYATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 490 ITVASEEGFGSTFTVSI 506



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVS 267
                N + ++ T   G    + +G S   ++ +E+ + ++ +        +    E   
Sbjct: 176 VFSGCNRAMEELT---GKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKHYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278



 Score = 38.4 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 39/312 (12%), Positives = 94/312 (30%), Gaps = 59/312 (18%)

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           + ++ +   +EI++R+ +  A E+   +  + +                           
Sbjct: 108 LQQNIEKLNQEIEERIKAEEAREEAMQDLENEVFQRERT--------------------- 146

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
            ++ + ++       +      I   + +      NR+  EL       L      D   
Sbjct: 147 -QLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYS 205

Query: 354 -ELLEFLRSANK----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            E+ E +   ++      + + ++ W E         E  K  ++  +G+ L        
Sbjct: 206 KEVAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL-------- 257

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-------GVA----------VFG 451
             G +    ++T +   E       + +   I  +S        G+           +  
Sbjct: 258 --GLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQLTD 315

Query: 452 PDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              + ++  N +  +L     + +      R          N  D      +I ++   E
Sbjct: 316 EQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESI-SALMAE 374

Query: 511 RKSLQGTLELLS 522
           +K L+  LE LS
Sbjct: 375 QKGLRFDLERLS 386


>gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O127:H6 str. E2348/69]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|332992705|gb|AEF02760.1| sensory box histidine kinase/response regulator [Alteromonas sp.
           SN2]
          Length = 929

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 159/379 (41%), Gaps = 23/379 (6%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              + V ++ E ID  ++ V  F      + ++   +  L       L  G +       
Sbjct: 266 ALQSEVLLKLERIDEAAQTVLKFLSIAQDLDITEYQYEGLKMQANIALLKGQYRDAYQFL 325

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-----------SVLEYSIIPLPN 535
                 +   +D   +   +F+  R      ++ +++           S  +  II    
Sbjct: 326 LQHSELKQQVFDTRQSEQLAFNRARLETDQKIQKITELELSQQLSEQNSTFQVYIIVTIC 385

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +L F     +++ +R L E    L+ A + K+ F+  +S+E+R+P+  I+G T L  
Sbjct: 386 CVAILLFFMFVITLKQKRELRELALNLQNATDAKSEFLARMSHEIRTPVNAIVGLTKL-- 443

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++   +N +Q   +  I  SS  LL ++ND+LD + ++AG + +      L+ L+ +V 
Sbjct: 444 -TQKSVVNEEQKTNLSQIEQSSQTLLGVINDVLDFSKIEAGKLNIESEVFELDKLVEQVI 502

Query: 656 QSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +       E  I + + ++         D  R+ Q+ + +LSNA+ F+ +G  V +   +
Sbjct: 503 RLHGINAKEKRIELLQYVARDVPLQVSGDALRIEQVLNNLLSNAIKFTDEG-MVFVSVNK 561

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
              +      FSVK+ G  +  +  +S+F+ F         +  G GLGLSI +  ++L 
Sbjct: 562 KYSEHGVLLEFSVKDTGIGLSTNQIESLFDAFTQADESITRKYGGTGLGLSICKHLVSLM 621

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG + + S      T    
Sbjct: 622 GGEIWVESKLGQGATFFFT 640


>gi|329921992|ref|ZP_08277799.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328942452|gb|EGG38715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 484

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 124/238 (52%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + + +++++K+ F+  +S+ELR+PLT+I G+++ L +        +    ++ IS
Sbjct: 231 LNYMAQEIVRSNQVKDDFISSISHELRTPLTSIKGWSETLDSGGYDP--EETKIGMQIIS 288

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L+ LV ++LD + +    MKL    + L +LL E+  ++ TK  +  ++IK+ SD
Sbjct: 289 KETDRLIGLVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESD 348

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K      D  RL Q+F  I+ NA+ FS +   + L  A +    I +V+++G  I ++ 
Sbjct: 349 EK-PIIYGDVNRLKQVFLNIVDNAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGISDEH 407

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + V +RF          G GLGL+I +  + LHGG + + S     T +  ++P  E
Sbjct: 408 LRRVKDRFFQVNPLN--GGTGLGLAITQQLVELHGGTMEMESELGHGTAVIVKLPLPE 463


>gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG]
          Length = 1307

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 26/315 (8%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             A +    DE +  Q  L+  +  + E + + +   Q     V   +   A + L E+ 
Sbjct: 659 LTAQLKDRSDELEQRQKALQESNAELEEKAALLVR--QNSDIEVKNGEIENARQVLEERA 716

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ E I  + + 
Sbjct: 717 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFAETIYGAGSD 776

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           LL L+NDILDL+ V+AG M+++ + I L  L++ V+ +      E N+   V    +L  
Sbjct: 777 LLQLINDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPA 836

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---------------------AARDNG 717
           +   D QRLLQ+   +LSNA+ F+  G+  ++                         D  
Sbjct: 837 TLHTDEQRLLQVLRNLLSNAVKFTGSGAVELIIRPAGADVPDAIREQLLEAGSLTEPDGK 896

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              FSV + G  I E   + +F  F         +  G GLGLSI      L GG +   
Sbjct: 897 MIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIDAQ 956

Query: 776 SSDEGVTTINCRIPS 790
           S     +T    +P 
Sbjct: 957 SQPGRGSTFTLYLPL 971


>gi|295108000|emb|CBL21953.1| amino acid-binding domain sensor hybrid histidine kinase
           [Ruminococcus obeum A2-162]
          Length = 951

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 124/251 (49%), Gaps = 8/251 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D+ +    L    +    A   K  F+ ++S+++R+P+  I+G+  L++    G    +
Sbjct: 549 NDTQKLNDKLEIALKKAEDASLSKTRFLNNMSHDIRTPMNAILGYAQLMEDELKGKGLPE 608

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            S+++E +  S T+LL+++N++LD+A +++  M+L+ +   + D+   +      K  + 
Sbjct: 609 TSEHLEKLQQSGTLLLSIINNVLDMARIESERMELDENYCRIEDVWKSLFAVFDEKAMKK 668

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------F 719
           NI +    + +    + D  ++ +IF  ILSNA+ ++  G +V++     + D       
Sbjct: 669 NIVLHYAMNVEHEHVLTDVTKVKEIFVNILSNAIKYTPAGGSVMVDIDELSCDESGYMIV 728

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  + +D    +F  F    +  + +  G GLG+SIV+ ++ L GG +++ S 
Sbjct: 729 RISVSDTGIGMSQDYQTKIFEAFTREQNTTKSKIAGTGLGMSIVKKYVELLGGIINVESE 788

Query: 778 DEGVTTINCRI 788
               +T    +
Sbjct: 789 LGKGSTFTVTL 799


>gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC
           35469]
 gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia fergusonii ATCC 35469]
 gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
           ECD227]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
            G +  + + D  RL QI + ++ NA+ F+ +G+  IL   R            +++ G 
Sbjct: 395 KGDVPDNVIGDPLRLQQIITNLVGNAIKFTERGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|17228134|ref|NP_484682.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17129984|dbj|BAB72596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 820

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E+   A+  K+ F+ ++S+ELR+PL  I+G+  +L  SK+  L  K+ Q V  I    +
Sbjct: 354 KESADSANNAKSEFLANMSHELRTPLNGILGYAQILGRSKV--LPDKERQGVNIIHQCGS 411

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL L+NDILDL+ ++A  ++L      L   +  V +    ++ +  I      D  L 
Sbjct: 412 HLLTLINDILDLSKIEARKLELASQAFHLPSFMQGVVEICHIRVQQKGIEFHYEPDADLP 471

Query: 679 S-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-------GDFIFSVKNNGSSI 730
           +   AD +RL Q+   +L NA+ F+ +GS V L+  R             FS+ + G  I
Sbjct: 472 AGISADEKRLRQVLINLLGNAIKFTDRGS-VALRVQRTGLEESDPRTKLRFSIVDTGVGI 530

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  +F  F      + +  G GLGL+I +  + L GG + + S     +     I
Sbjct: 531 ASADINKLFQTFEQVGEQKRKVEGTGLGLAISQQLVQLMGGQIQVKSQLGVGSEFFFEI 589


>gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073]
 gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046]
 gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197]
 gi|89109572|ref|AP_003352.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. W3110]
 gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A]
 gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS]
 gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739]
 gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. DH10B]
 gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5]
 gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94]
 gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398921|ref|YP_002272251.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11]
 gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1]
 gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026]
 gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BW2952]
 gi|254037836|ref|ZP_04871894.1| sensor-regulator [Escherichia sp. 1_1_43]
 gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019427|ref|ZP_05433292.1| hybrid sensory histidine kinase BarA [Shigella sp. D9]
 gi|256024711|ref|ZP_05438576.1| hybrid sensory histidine kinase BarA [Escherichia sp. 4_1_40B]
 gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O26:H11 str. 11368]
 gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O157:H7 str. FRIK966]
 gi|291284115|ref|YP_003500933.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185]
 gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088]
 gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302]
 gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|83288337|sp|P0AEC7|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288338|sp|P0AEC6|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288339|sp|P0AEC5|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073]
 gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli]
 gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai]
 gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
           Ss046]
 gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197]
 gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K12 substr. W3110]
 gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           HS]
 gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E24377A]
 gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. DH10B]
 gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           SMS-3-5]
 gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii
           CDC 3083-94]
 gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli]
 gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11]
 gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli IAI1]
 gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli UMN026]
 gi|226839460|gb|EEH71481.1| sensor-regulator [Escherichia sp. 1_1_43]
 gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BW2952]
 gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. TW14359]
 gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O26:H11 str. 11368]
 gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088]
 gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185]
 gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302]
 gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972]
 gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli
           ETEC H10407]
 gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
 gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
 gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli
           3431]
 gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
 gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           G5101]
 gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           493-89]
 gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           H 2687]
 gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli
           EPECa14]
 gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli
           E128010]
 gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei
           53G]
 gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1357]
 gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli
           RN587/1]
 gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520]
 gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120]
 gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489]
 gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007]
 gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
 gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167]
 gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1044]
 gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1125]
 gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii
           3594-74]
 gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           UMNK88]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|332999537|gb|EGK19122.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri VA-6]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|229028788|ref|ZP_04184892.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
 gi|228732520|gb|EEL83398.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
          Length = 883

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 465 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFT 584

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-------STVILKAARD-----NG 717
           +  SD     F  D +R+ QI   +LSNA  F+ KG       S      + +     N 
Sbjct: 585 IEDSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGFVSLHFDSIETANLSHEMQSISND 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WMKISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 705 SNVGEGSTFTVYIP 718


>gi|94263458|ref|ZP_01287271.1| PAS [delta proteobacterium MLMS-1]
 gi|93456188|gb|EAT06327.1| PAS [delta proteobacterium MLMS-1]
          Length = 825

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 12/231 (5%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+PL  IIG ++LL  +   +L+ +  +Y   I  S   LL ++NDIL
Sbjct: 302 KSEFLANMSHEIRTPLNGIIGLSELLAAAP-ENLDPEHRRYAGLIHDSGQALLTIINDIL 360

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           D + ++AG ++L      L+D +    +         +I +K+    +L    + D QRL
Sbjct: 361 DFSKIEAGHLELAEQQFNLHDAVTTTLELAKATAGAKDIPLKLEYSPELPGELLGDPQRL 420

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--------FSVKNNGSSIPEDMCKSVF 739
            Q+   +LSNA+ F+  G  V+  AA D             F+VK+ G  I  +  + +F
Sbjct: 421 RQVLLNLLSNALKFTESGEIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLEQIF 480

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F        R   G GLGL+IV   +   GG + + S     ++    I
Sbjct: 481 EAFNQADTSSTRHQAGTGLGLAIVRRLVTAMGGTIKVESEPGQGSSFQVII 531


>gi|108803625|ref|YP_643562.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764868|gb|ABG03750.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 584

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 153/391 (39%), Gaps = 30/391 (7%)

Query: 403 IVTSNPRGGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + + +  G     F  +  +++   ++     K     ++   E +      G I ++N 
Sbjct: 210 VTSRDELGEMARAFNYMAGEIEHYISEIQDQKKHLEAVLEASLEALVATDHAGGITMANA 269

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A   +                      R   E         I+    +   S++  +EL 
Sbjct: 270 AAARMLGVRP-------------GDRGRSLREVGVAPEILGIVREAAETGFSVR-EVELG 315

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             S   Y+       ++    +     +   RAL          +  K++FV   S+ELR
Sbjct: 316 EKSFWAYAARMDSGGRSQGGVILAVRDISEYRAL----------ERAKSAFVSDFSHELR 365

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I     LL+ ++   L+  +++ +E      + +  +V +++ LA +D+    L 
Sbjct: 366 TPLTTIQSAVGLLQRAR-ERLDPLENRALELAEGELSRIRAMVEELMTLAQMDSWQYSLQ 424

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            +   L+ +L +  +++  K     I I +   G       D Q+L Q+F  +L NA+ +
Sbjct: 425 LAPAGLDRILRDAVEAVEPKALRFGIEINLYEAG--VHLTCDAQKLYQVFLNLLDNAVKY 482

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLS 759
           S +GS V +  A      +  VK+ G  IPE     +F RF            G GLGL+
Sbjct: 483 SEEGSRVDVTVAESGEQAVVRVKDTGVGIPEKDLPHLFERFYRVEKDRSRSTGGSGLGLA 542

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           I +  + +HGG +S+ S     +T   R+P 
Sbjct: 543 ICKQIVEMHGGSISVESRLGEGSTFTVRLPK 573


>gi|326405972|gb|ADZ63043.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 480

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 158/388 (40%), Gaps = 43/388 (11%)

Query: 417 ENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           E++   Q +LE + N L       + ++ +GV      G I ++N +      T +N L 
Sbjct: 99  EDIVRTQNNLENQRNQL----DSILAYMVDGVIATDRRGNIIMANKSALHYLNT-DNDLL 153

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +I  +     +Y             I + D   +S+   ++        +S+    +
Sbjct: 154 MQKNIVEVLKITDQYNFYDLLEKEPEITIETHDSGNESISLHIK--------FSLFRRES 205

Query: 536 A---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                 +    ++T+  +AER               +  FV +VS+ELR+PLT++  + +
Sbjct: 206 GFISGIIAVLHDMTEQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLE 251

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L+   +       S ++      +  ++ +++D+L L+ +D   + LN   I L   L+
Sbjct: 252 ALEDGAIED-KETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLD 310

Query: 653 EVKQSIATKMH-------ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
                +   +         +N  +      +      D  ++ Q+   I+ NA+ +S KG
Sbjct: 311 YQINRLDQILETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKG 370

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVE 762
            T+ +   +   D + S+ + G  IP+     +F+RF      +   +  G GLGLSIV 
Sbjct: 371 GTITISVEKRESDVLISISDQGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVH 430

Query: 763 SFINLHGGHVSISSS-DEGVTTINCRIP 789
             + +HGG +  SS  +   TT +  +P
Sbjct: 431 DIVKIHGGTIFASSEGEGKGTTFSFTLP 458



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 84/274 (30%), Gaps = 39/274 (14%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           V  +  + +Q      IL  +   +   D+   +   N+S +     D   L        
Sbjct: 102 VRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQK----- 156

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-----SNPR 409
               +    K+ +Q N+    E    +  + ETH          +LH+  +     S   
Sbjct: 157 ---NIVEVLKITDQYNFYDLLEKEPEI--TIETHDSG---NESISLHIKFSLFRRESGFI 208

Query: 410 GGTIWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            G I +  ++T Q   E            +  T +      ++ L +G A+   +     
Sbjct: 209 SGIIAVLHDMTEQDKAERERRLFVSNVSHELRTPLTSVKAYLEALEDG-AIEDKETASSF 267

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N +     +           I ++        +          +I   D +   L   L
Sbjct: 268 INVSLTETNRMIRM-------ISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL 320

Query: 519 ELLSDSVL--EYSIIPLPNAQTMLTFVNVTDSVR 550
           E  S+ ++   ++++   + Q +   ++     +
Sbjct: 321 ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQ 354


>gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1180]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
 gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|33863684|ref|NP_895244.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33635267|emb|CAE21592.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 685

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 161/395 (40%), Gaps = 50/395 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  R +++ E   L     +  +   
Sbjct: 289 EELTAAQVKQQSLIATMADGALLLDEVGQIVLANPTARRIFRWEGRNLEGQELLNELPEI 348

Query: 487 CSRYYNESDGWDLFA-----AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   ++     L        +  S ++  ++L+  L+ + D           + +T+  
Sbjct: 349 IANELHDPLQSLLRNIGESNDLRCSLEEPSRTLRIVLQSVRDQ----------SGETLKG 398

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L       
Sbjct: 399 IAITVQDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDLGDQL 448

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              ++ +++   ++ +  L  LVND+LDL+ +++G   + +  + L   + +  ++    
Sbjct: 449 SEEEKKEFLGIANSETDRLARLVNDVLDLSRLESGR-TVQFEPMDLRPAIEQTLRNYRLN 507

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
             +  I I++ +D +L + + +   LLQ+   ++ N + FS  G +++++A         
Sbjct: 508 ADDKQIHIELNTDDELPTILGNWDLLLQVLDNLVGNGLKFSRAGGSLMVRAYTWPDSCKM 567

Query: 718 -------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLG 757
                                   V + G  I +D  + +F+RF    +      G GLG
Sbjct: 568 SPIESSKSAPHCEFFSPLPKLRVEVADTGHGINQDDQQHIFDRFYRVENAVHTEAGTGLG 627

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LSIV   I  HGG + ++S  E  TT    +P ++
Sbjct: 628 LSIVRGIIEKHGGQIRMASEVELGTTFWFDLPLEQ 662


>gi|295109684|emb|CBL23637.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 850

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 165/418 (39%), Gaps = 31/418 (7%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRI 456
           + + +          +    ++T    +E+  +  +     +++ L + +  +       
Sbjct: 372 RNVIIRGEIEDSEYAMIFLRDITE-AKVESARHLQMAADNASMEQLIQSIVRLVDRFVVC 430

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N  +       +    P     +        Y   +  +    +IT  D+ RK+L+ 
Sbjct: 431 DLENDRYEFYSLNGQMIYKPLGFYHDFQMQVLEKYKTLEPLEAMDILITP-DNIRKNLKS 489

Query: 517 TLEL-------LSDSVLEY-SIIPLPNAQT---------MLTFVNVTDSVRAERALTEKN 559
              +       L +   +  S IP+              M         + + +AL E  
Sbjct: 490 ENNIYKFEYCSLDEKTYKIASYIPMEWKNGKLLKVLLASMDVTQEKKAEIESRQALKEAY 549

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +   A+  K  F+ ++S+++R+P+  I+G T +           +  + +  I+ SS  
Sbjct: 550 RSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAI--AGANIESQDRVIECLGKITESSRH 607

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLG 678
           LL L+N++LD+A +++G M L      L++L++ +       + E+     +  +  +  
Sbjct: 608 LLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTQPVLDEHKHNFDIHINHIEHE 667

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPE 732
               D  R+ Q+F  ++SNA+ ++  G  +I             G + F+++++G  +  
Sbjct: 668 DVCGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEKPNGFSELGCYEFTIEDDGIGMSP 727

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  K +F+ F         R  G GLG++I  + +NL  G++ + S+    T I   I
Sbjct: 728 EFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGNIKVDSTLHQGTKITVTI 785


>gi|291448188|ref|ZP_06587578.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
 gi|291351135|gb|EFE78039.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
          Length = 1819

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 25/315 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +     D  + L+   + L  S  E      L   Q     V  T+   A + L E+ 
Sbjct: 1272 QELTEQLRDRSQELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERA 1331

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ E I  + + 
Sbjct: 1332 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSD 1391

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  
Sbjct: 1392 LLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPA 1451

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KAARDNGD 718
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         + D
Sbjct: 1452 TLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADAD 1511

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I FSV + G  I       +F  F         +  G GLGLSI      L GG +  +
Sbjct: 1512 LIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAA 1571

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1572 SEPGRGSTFTLYLPL 1586


>gi|229522299|ref|ZP_04411715.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM
           11079-80]
 gi|229340284|gb|EEO05290.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM
           11079-80]
          Length = 857

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 157/383 (40%), Gaps = 34/383 (8%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +               
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--------------- 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
           I+ +      ++            IT           T E+    V  +++ P+    Q 
Sbjct: 388 IQFLREDAQNHFLFEILERQLLPTITKAAQGNNPSDVTTEV-DGRVYRWNLSPIMVEGQI 446

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK
Sbjct: 447 ISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLK 506

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +   L +L+  + 
Sbjct: 507 RT---PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAID 563

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++   
Sbjct: 564 RIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQL 622

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             GD     +  V + G  I E     +F  F+       R   G GLGL+IV S + + 
Sbjct: 623 IEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEML 682

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G + +SS     T    ++P +
Sbjct: 683 SGQLHVSSEYGIGTRFEIQLPIE 705


>gi|228950120|ref|ZP_04112304.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809543|gb|EEM55980.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 896

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N++  
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVKFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|218676135|ref|YP_002394954.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218324403|emb|CAV25798.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 861

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 159/397 (40%), Gaps = 34/397 (8%)

Query: 409 RGGTIWMFENL--TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            G  I+ F ++  T++   E + +   +   +  +     + V+   G +   NPA R  
Sbjct: 334 DGSNIFEFHHIGCTLEDTFE-RLSEQHQKFQDLFNFAHSPILVWSEKGDLIQMNPAARM- 391

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                           +      Y   +  ++L          +   L G    + + V 
Sbjct: 392 ---------------ALFDEDDNYGAMAREFELRMLPNIQMVVQGSKLTGINVPIGEKVF 436

Query: 527 EYSIIPLPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +++  +     +        ++T  + AER      E       ++  F+  +S+E+R+
Sbjct: 437 RWNMSAIRVEHGITGVVVQGQDITKLIEAERQADRAREEAEHLASVRADFLAKMSHEIRT 496

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G + LLK S     N  Q   V+ +  S+  LL ++NDILD + ++ G   +  
Sbjct: 497 PLNGILGVSQLLKRSIHDEDNRDQ---VDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQK 553

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDF 701
              +L +L+N +         + ++   +++          D+ RL QI   +LSNA+ F
Sbjct: 554 KDFLLGELVNTLDSIYRPLCEDKSVEFTIVNHLIDDIKIHTDQVRLNQIMFNLLSNALKF 613

Query: 702 SSKGST-----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           + +GS      +      D    I  VK++G  I E    ++F  FV       R   G 
Sbjct: 614 THQGSISVSFEIESILNTDFASLIVRVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGS 673

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGL+IV++ +++  G + + S  +  +     IP +
Sbjct: 674 GLGLTIVKNLVDMLEGDIQVRSVKDQGSEFIIEIPVE 710


>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus
           degradans 2-40]
 gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 1109

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 12/243 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L         +   K+ F+  +S+E+R+P+  ++G   L+  S   SL  +Q + + 
Sbjct: 402 ELELLAAKNEAESSSRAKSEFLACMSHEIRTPMNGVLGMLGLVLNS---SLTPEQERKLL 458

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              +S   LL+++NDILD + V+AG ++L +     + LL++V QS      E  I + +
Sbjct: 459 LAQSSGQSLLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSAQEKGIELVL 518

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKN 725
              G  G  +  D  RL QI + +LSNA+ F+S+G  +I++A  D+          SV +
Sbjct: 519 DDIGLGGKVLRGDPSRLRQIINNLLSNALKFTSQGE-IIVRAKLDSEINGLNQLRCSVTD 577

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP D    +F+ F        RR  G GLGLSI +    + GG + + S     T 
Sbjct: 578 TGIGIPSDKISGLFDSFTQVDSSTTRRYGGTGLGLSICKMLTRIMGGDIFVVSEVGKGTR 637

Query: 784 INC 786
            + 
Sbjct: 638 FDF 640


>gi|254506571|ref|ZP_05118712.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16]
 gi|219550444|gb|EED27428.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16]
          Length = 957

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 127/247 (51%), Gaps = 11/247 (4%)

Query: 552 ERALTEKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           E  L      L+  +A   K++F+  +S+E+R+P+  ++G   LLK      LNS+QS+Y
Sbjct: 451 EEVLNHAQARLQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDE---GLNSQQSRY 507

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I+ S + LL ++ND+LD + ++AG +++      L  ++ +V+Q ++ +  E  + +
Sbjct: 508 VDVINRSGSTLLAILNDVLDYSKIEAGHLEIRTKDFNLKAMVEDVEQLLSGRAAEKQLEL 567

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFIFSVKN 725
             + +  + +F   D  R+ Q+ + ++ NA+ F+  G  V +  A D    G  +F V +
Sbjct: 568 SALIESDVTTFWKGDVTRISQVLNNLVGNAIKFTDSGH-VDIYVANDPERAGHVLFEVSD 626

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +G  I     K++F+ F   +     + G GLGL+I +  +   GG + + S     +  
Sbjct: 627 SGIGISPKEQKNLFDAFTQASGGLSSKGGTGLGLAISKKIVEAMGGELQVDSDLGKGSRF 686

Query: 785 NCRIPSK 791
              IP +
Sbjct: 687 WFSIPLE 693


>gi|162454319|ref|YP_001616686.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161164901|emb|CAN96206.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 850

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/549 (17%), Positives = 195/549 (35%), Gaps = 54/549 (9%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATN 349
           +A + +     +D       ++  +   + I +     +   N     ++ + L  +  N
Sbjct: 301 VAKERAARRQADDARALLATVVEQMPAGLVIAEPPTGRVLLSNPQAGAIFGLPLLEI-QN 359

Query: 350 PSNDELLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
                +       +  P E  +W   +          E         +G    ++V S P
Sbjct: 360 IDGYAVCRGSDPRSGRPYEARDWPLARTITTGEVVIDEEIDIV--RDDGARGRILVRSAP 417

Query: 409 RG-------GTIWMFENLTVQVDLETKYN-----------------TLVKVQGETIDHLS 444
                      +  F ++T +   E                     TL +V   T+  L+
Sbjct: 418 VRDPVGRVMAAVVTFFDITERTRAERGERFLAAASAALSDTLDFQGTLDRVGHLTVPELA 477

Query: 445 E-GVAVFGPDG------RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           +  V    PD        +  + P      +     L P   +  +              
Sbjct: 478 DWCVIQTLPDLEQSRGLTVIHARPEELQRARALFRELDPPPPLVALLERALCSERPELIG 537

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-----------------LPNAQTML 540
           D    +I S D+     +    L   S L   ++                  + +   + 
Sbjct: 538 DPSHPLIASLDENGVFRRFVRALGITSALVVPLVARGRTFGCITLATAGSGRVYDEADLA 597

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++              EA ++A E++++ +  VS++LR+PL+ I+    ++    + 
Sbjct: 598 VAHDLAQRAALAADNARLYEAAQRAIELRDNVLATVSHDLRNPLSAILTAAAVMTKRAVT 657

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                 ++ ++ I  S+  +  L++D+LD A++ AG + L        ++  E  ++  +
Sbjct: 658 RGEKGDTKAIQAIQRSAHRMDRLIHDLLDFASLRAGRLALRRQPQDPREIGREAVETFES 717

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +  E  I++ V++   +     DR R+LQ+ + +LSNA+  +     + L+  R     +
Sbjct: 718 QAQEKGIQLGVVAADDVPLVTCDRDRVLQVLTNLLSNALQVTGAQGAITLRCERGEEHVV 777

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           FSV + G  IPE+    +F RF      G  +G GLGL+I    +  HGG + + S    
Sbjct: 778 FSVADTGPGIPENELPHLFERFWRGERNG-YKGTGLGLAIARELVAAHGGTIDVESRVGV 836

Query: 781 VTTINCRIP 789
            TT    IP
Sbjct: 837 GTTFRFTIP 845


>gi|332530115|ref|ZP_08406065.1| signal transduction histidine kinase-like protein [Hylemonella
           gracilis ATCC 19624]
 gi|332040588|gb|EGI76964.1| signal transduction histidine kinase-like protein [Hylemonella
           gracilis ATCC 19624]
          Length = 814

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 145/346 (41%), Gaps = 24/346 (6%)

Query: 453 DGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
           DG+++  NP F  +       +          +       + E D  +L      +    
Sbjct: 193 DGKLQAGNPRFEQITNQMVQAVPEEFRPTFEAMQRISGDLHRELDQREL------ALTSL 246

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIK 569
           R++L     LL D+  + +   +         + V     A+R  L E  +A   A+  K
Sbjct: 247 RQALA---RLLPDAPQDPATQGMDLGALADLVLQVVREREADRVTLQEAKQAAEAANRAK 303

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+E+R+P+  I+G T L   +   +L  +Q  Y+  +  S+  LL ++ND+LD
Sbjct: 304 SEFLAVMSHEIRTPMNGIVGMTGLALGT---TLTPQQRGYLTMVRRSADALLGVINDVLD 360

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLL 688
            + ++AG + L+     L+ L+     S+  +  E  +R+            + D  RL 
Sbjct: 361 FSKIEAGRLTLDPRPFRLHALVRSTLASLDNQAREKGLRLAYEPAEDFSHRLIGDPGRLR 420

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARD---NGDFI--FSVKNNGSSIPEDMCKSVFNRFV 743
           QI   ++ NA+ FS  G+ + ++   +   +G  +  F V++ G  I     +++F  F 
Sbjct: 421 QILVNLVGNAIKFSETGA-ITVRVRTEALRDGQVVLRFEVQDQGIGITPSQQQAIFQPFT 479

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  R   G GLGL+I    +    G + + S+    +T +  
Sbjct: 480 QADASITRHYGGTGLGLAICGKLVQAMEGEIGVRSAPGQGSTFHFT 525


>gi|294646778|ref|ZP_06724401.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807691|ref|ZP_06766484.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292637938|gb|EFF56333.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445127|gb|EFG13801.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 623

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/543 (20%), Positives = 213/543 (39%), Gaps = 44/543 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E GN   Y I  V +    A      S    +         I   L + I ++D +  
Sbjct: 101 TDEDGNEIVYGISEVQDGPDMA------SAYQALQYSERLLSNIFKYLPIGIELYDMDGV 154

Query: 328 LQFHNRSFVELWEID--LAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKE--NIFSVY 382
           L   N   +E++ I+     L  N  ++ +  + ++   K  E  ++    +   + S Y
Sbjct: 155 LVDLNDKELEMFHIEKKEDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYY 214

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           ++++       +    TL+   + +     + +  + T       K     +      D+
Sbjct: 215 QNTQKQGTIDLMTKVTTLYN--SEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDY 272

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G A F       LS   +           +  T + +I  T   ++ +       A 
Sbjct: 273 AKVGYAHFN-----ILSGHGYAQKSWYRNVGEAYETPLSDIFGTYRHFHPDDR-----AL 322

Query: 503 IITSFDDERKSLQGTLE-----LLSDSVLEYSIIPL---------PNAQTMLTFVNVTDS 548
           +I   DD R  L   L      L  D    ++ + L            + +    ++T+ 
Sbjct: 323 LIRFLDDARNGLTTQLSKEMRVLREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITEL 382

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++  +     + 
Sbjct: 383 KRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENAAEKELYNS 442

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            + + +     L+N   D++DL+ +++G ++L    + L +LL+E     A ++    + 
Sbjct: 443 LIGHNNKLLLNLIN---DVIDLSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVE 498

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +             DR R+ QI S  LSNA+  ++ G  V +    D+      VK+ G 
Sbjct: 499 LLTNYPAHDSLVELDRLRIKQILSNFLSNALKNTTTGH-VEIFYEVDHQSVRIGVKDTGR 557

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP++M + +F RF       Q  G GLGL I +  +    G + + S     TT    +
Sbjct: 558 GIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIEL 615

Query: 789 PSK 791
           P +
Sbjct: 616 PCR 618


>gi|83312522|ref|YP_422786.1| Signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Magnetospirillum magneticum
           AMB-1]
 gi|82947363|dbj|BAE52227.1| Signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Magnetospirillum magneticum
           AMB-1]
          Length = 840

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/576 (15%), Positives = 201/576 (34%), Gaps = 29/576 (5%)

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-L 283
              T      + +   R+L K  +   +  S           + L+ G      +V   L
Sbjct: 277 LLGTSATDGHERVIAYRRLEKHPLVVAVGMSLTEVLMTWSRDTALQGGATLLLALVTFGL 336

Query: 284 NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
               +  +A     +  +         +  +  V +   D      + N  ++EL     
Sbjct: 337 AMVSDRRLAERQRVQQALAASEARYRMLTEHSPVGVFQADAEGTCLYANERWLELAGRGR 396

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           + L        +    R A           W+ ++    +     +      +G    V 
Sbjct: 397 SELLGEKWCQVVHPDDREA-------VAALWRGHVNG--QGEFLAEMRLMRGDGAIRWVR 447

Query: 404 VTSN-------PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV-FGPDGR 455
             +        P GG +   E++T   + E +     +   +      + + +    DGR
Sbjct: 448 GHAAALSVEEGPAGGLVGTIEDITAAKEAERRLRLSEEKFAKAFRASPDAMVISLTEDGR 507

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
               N AF  +       L   T +                       + +F+   +   
Sbjct: 508 YIDLNDAFADMLGYSRLDLMGHTALGMGVWADPEDRARLVEAARRDGQVVNFETRLRRKN 567

Query: 516 GTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           G +    D+++    + L +    +    +V++    E    E    L  +++    F  
Sbjct: 568 GEV---FDTLIAVQKVVLDDLDCLLFICRDVSERKAMEARSRELLVRLDASNKELEQFAY 624

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             S++L+ PL  I G+  L++    G L+    +++ ++   +  +  ++ D+L+ + V+
Sbjct: 625 VTSHDLQEPLRMIAGYAQLIERRYRGRLDDDADEFIAFLVDGAKRMQAMIRDLLEYSRVE 684

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
              +   + +  + ++L++V  ++   + E   RI+V   G +    ADR ++L++   +
Sbjct: 685 --RLGGQFESFGMGEVLDDVMANLGAALTETGGRIEV---GPMPQVTADRSQMLRLLQNL 739

Query: 695 LSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           + NA+ + S      V + A    G ++ SV +NG  I       +F  F     R    
Sbjct: 740 IGNALKYRSPDRQPVVTVTAEPGAGGWVISVADNGIGIEPAYFDRIFLVFQRLHTREHYD 799

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G G+GL+I +  +  HGG + + S  +  +     +
Sbjct: 800 GTGIGLAICKKIVERHGGRIWVESEPDRGSVFRFSL 835



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/392 (13%), Positives = 111/392 (28%), Gaps = 74/392 (18%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
             LAE     + L+   + +++L +     V+  D  G  L+AN  + +     G    +
Sbjct: 342 RRLAERQRVQQALAASEARYRMLTEHSPVGVFQADAEGTCLYANERWLELA---GRGRSE 398

Query: 236 AIGESRKLFKEEIKKRMISSS------ALEKNFCETVSTLEHGNNKSYKIVRVLNS---- 285
            +GE          +  +++          +   E       G  +  +      S    
Sbjct: 399 LLGEKWCQVVHPDDREAVAALWRGHVNGQGEFLAEMRLMRGDGAIRWVRGHAAALSVEEG 458

Query: 286 --FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAI-FDQNRYLQFHNRSFVEL 338
              G  G   D++       +L  + E           A+ I   ++      N +F ++
Sbjct: 459 PAGGLVGTIEDITAAKEAERRLRLSEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADM 518

Query: 339 WEIDLAFLATNPSND-----ELLEFLR---SANKLPEQLNWKTWKENIFSVYKSSETHKD 390
                  L  + +       +  +  R   +A +  + +N++T                 
Sbjct: 519 LGYSRLDLMGHTALGMGVWADPEDRARLVEAARRDGQVVNFET----------------- 561

Query: 391 TWHLPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                NG+    ++       +     +++  +++ +  +E +   L+            
Sbjct: 562 RLRRKNGEVFDTLIAVQKVVLDDLDCLLFICRDVSERKAMEARSRELLV----------- 610

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
                    R+  SN           + L     +    A            D     I 
Sbjct: 611 ---------RLDASNKELEQFAYVTSHDLQEPLRMIAGYAQLIERRYRGRLDDDADEFIA 661

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              D  K +Q  +  L    LEYS +     Q
Sbjct: 662 FLVDGAKRMQAMIRDL----LEYSRVERLGGQ 689


>gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli
           042]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|254786633|ref|YP_003074062.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237684702|gb|ACR11966.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 691

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/535 (20%), Positives = 196/535 (36%), Gaps = 45/535 (8%)

Query: 287 GEAGIAIDVS---KEITVNDQLTHTYEILHNL---TVAIAIFD---QNRYLQFHNRSFVE 337
             A   +DVS     +     L  +      +   +   A  D    N  +   N  F  
Sbjct: 9   AAAAPGLDVSMHGDTLAKLQALERSVSTYERIFRGSRGYAFLDWDLPNSKMA-WNGGFWS 67

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--- 394
                 A +    + D+ +E++          + K    NIF+  +SS   +  + +   
Sbjct: 68  HLGYSDADMEFISNPDKFIEYVH-------PDDQKKLMSNIFAHLRSSGPGEIVFRIRKK 120

Query: 395 PNGQTL---HVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             G       V    N +G  ++M     ++T     E             I   ++G+ 
Sbjct: 121 KGGHIWAEARVDAERNAKGRVVYMSGIVFDVTKLKQTEQALLISEARHARIIQSSNDGIW 180

Query: 449 VFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            +    G    SN  +  L    E+       +  ++A   R +   D    F   +   
Sbjct: 181 EWSSAHGGFHFSNRCWEHL-GFTEHDDIVNQGMDRMSAWRKRMH--PDDLKEFDHTLQEH 237

Query: 508 DDERKSLQGTLELLSD----SVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEK 558
              R        +         +        +      +   T ++VT+   AE  + + 
Sbjct: 238 VQNRVPFDVEYRIRGKDEHWRWIRARGQMTYDEAGKPTRMSGTNMDVTEIKLAEERVLKA 297

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   +A+  K+ F+  +S+ELR+PL +I+GF  L       SL  +Q   +  I  +  
Sbjct: 298 KEVAEEANRAKSDFLSSMSHELRTPLNSILGFAQL--CDADKSLLPEQRANIAEIRRAGE 355

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGK 676
            LL LV D+LDLA +++  M  +   +    LL E   S+ ++     I + +    D  
Sbjct: 356 HLLQLVGDVLDLAKIESRRMGFSLEPVTPARLLAEAVSSLQSQAEMRGISVTLEPACDES 415

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMC 735
               VAD  RL Q+F  +LSNA+ ++  G +V +  AR +      +VK++G  I E + 
Sbjct: 416 DVDVVADAVRLKQVFLNLLSNAIKYNVDGGSVHVGCARLEEAFLRVTVKDSGRGIAEHLQ 475

Query: 736 KSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           K ++  F           G G+GL I +  +   GG +  SS +   +     +P
Sbjct: 476 KQMYQPFNRLGNEASSIEGSGVGLVITKQLVEQMGGLIGFSSKENVGSEFWVDMP 530


>gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str.
           REL606]
 gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli B str. REL606]
 gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BL21(DE3)]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 155-74]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|119489748|ref|ZP_01622506.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454322|gb|EAW35472.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1012

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 7/247 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E  L   N  L+  D++K+ F+ + S+ELR+PL  IIG  + L     G L+      
Sbjct: 339 EREEDLERANTDLKHLDQLKDEFLANTSHELRTPLNGIIGIAESLIDGATGQLSDLTQSN 398

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I +S   L +LVND+LD + +    + L    + L  + + V       + + N+++
Sbjct: 399 LAMIVSSGRRLSSLVNDVLDFSKIRYSNIDLQLKPVDLYTITDLVITLSQPLVGKKNLQL 458

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-----AARDNGDFIFSVK 724
               + +  +  AD  RL QI   ++ NA+ F++ G   IL         D       + 
Sbjct: 459 INSINPESPAVQADENRLQQILHNLVGNAIKFTAAGQVEILAKKVDNLESDQEFLKIVIA 518

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I ED  + +F  F   +     +  G GLGL+I +  + L GG + + S     +
Sbjct: 519 DTGIGISEDKFEQIFESFEQASGTTAREYGGTGLGLAITKQLVELQGGKIEVFSRLGEGS 578

Query: 783 TINCRIP 789
             +  +P
Sbjct: 579 QFSFTLP 585


>gi|110806548|ref|YP_690068.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5 str.
           8401]
 gi|110616096|gb|ABF04763.1| sensor-regulator [Shigella flexneri 5 str. 8401]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227]
 gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|24114070|ref|NP_708580.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
           301]
 gi|30064131|ref|NP_838302.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
           2457T]
 gi|28558062|sp|P59342|BARA_SHIFL RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|24053197|gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. 301]
 gi|30042387|gb|AAP18112.1| sensor-regulator [Shigella flexneri 2a str. 2457T]
 gi|281602146|gb|ADA75130.1| Signal transduction histidine-protein kinase barA [Shigella
           flexneri 2002017]
 gi|313647846|gb|EFS12292.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 2a str. 2457T]
 gi|332753502|gb|EGJ83882.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 4343-70]
 gi|332753638|gb|EGJ84017.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-671]
 gi|332754699|gb|EGJ85065.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 2747-71]
 gi|332765737|gb|EGJ95950.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella flexneri 2930-71]
 gi|333000195|gb|EGK19778.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-218]
 gi|333015336|gb|EGK34676.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-304]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
 gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|312222389|emb|CBY02329.1| similar to autoinducer 2 sensor kinase/phosphatase luxQ
            [Leptosphaeria maculans]
          Length = 2006

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 30/287 (10%)

Query: 525  VLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +LE S++     +T   T  ++ D    E+ L E  +        K+ F+ ++S+E+R+P
Sbjct: 1247 LLENSLVEDGEEETWYGTATDINDHKLLEQTLKETMD-------AKSKFLSNMSHEIRTP 1299

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I G  + L  S    LNS+Q ++V  I AS+  LLNL+NDILDL+ V+AG++KL+  
Sbjct: 1300 LNGISGMVNFLLDSV---LNSEQLEHVNIIKASTDSLLNLINDILDLSKVEAGMIKLSME 1356

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
             + +  LL EV         +  + +  + +  + + V  D+ R+ Q+   ++ NA+ F+
Sbjct: 1357 WLHVPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPTMVKGDKFRIRQVLLNVVGNAIKFT 1416

Query: 703  SKGSTVILK-----------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
            ++G  + ++                    F V + G    E   K +F RF     +   
Sbjct: 1417 NRGE-IFVRCKMQPPDRSGLLKEHETMIRFEVVDTGQGFTEAEAKHLFKRFSQIDASSTR 1475

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR----IPSKE 792
            Q  G GLGL+I   F+ LHGG +   S     +T        +P+ E
Sbjct: 1476 QHGGTGLGLAISMQFVELHGGRMDAQSVPGRGSTFFFTIKFGLPTPE 1522


>gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|307139472|ref|ZP_07498828.1| hybrid sensory histidine kinase BarA [Escherichia coli H736]
 gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
 gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|328473184|gb|EGF44032.1| sensor histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 806

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++    + +   K +F+  +S+E+R+P+  ++G   +L  +    L  +Q +++  + 
Sbjct: 339 LEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLTDEQRKHLSTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G ++ + S   +  ++  +K    T   E  ++ KV S 
Sbjct: 396 DSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQFKVTSL 455

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
             +G +   D+ RL Q+   +L+NA+ F+ +G  V +  +     D    + ++K+ G  
Sbjct: 456 VPVGRWYDNDKARLRQVLFNLLNNAVKFTDRG-IVEVTLSEQTHYDKTVLVIAIKDTGIG 514

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  K +F  F        RR  G GLGL+IV+      GGHV++ S +   TT    
Sbjct: 515 ISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIGTTFTVE 574


>gi|229917679|ref|YP_002886325.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469108|gb|ACQ70880.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 159/389 (40%), Gaps = 20/389 (5%)

Query: 407 NPRGGTIWMFENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           N  G     F  + T       +     +     +  + + V         K++N A   
Sbjct: 269 NEVGQLTTSFRQMATSLTTQRYRIEEEREKTARLLHSIRDAVIYVEHATSEKVANQALFV 328

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-S 524
           L+     + +     R  A+              FA +  SFD + K    T  +  +  
Sbjct: 329 LFNQPITKRNEVDLYRLDASLEELGLQVDQKDAFFAFMERSFDGQCKEESVTFSMNQEER 388

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            ++     +    T    + V   V  E           + D +K   V  VS+ELR+PL
Sbjct: 389 FIQMYAEKIYLRGTRHGTMLVFRDVTHE----------TEVDRLKTELVSTVSHELRTPL 438

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T+IIGFT+LL+  KL +  S+  +Y+  I   +  L +L++++LD+  +++G    +   
Sbjct: 439 TSIIGFTELLRFRKLSAERSE--KYLGMIHQETLRLEDLISNLLDVQRMESGQQTYHNEP 496

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L+ +L +           ++I      D        DR RL Q+F  +L NA+ +S +
Sbjct: 497 ERLSAILEQAIAVHQGSSQHHHITFDCTED---VYVYGDRTRLNQLFMNLLHNAVKYSPR 553

Query: 705 GSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
           G  + ++ A +  D+I  S++++G  IP+     +F++F    +   R   G GLGL+I 
Sbjct: 554 GGEINVRVACERPDWIDISIEDHGIGIPQTALPKLFDKFYRVDNSASRKIGGTGLGLAIC 613

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +     HGG +  +S+    +     +P 
Sbjct: 614 KEIAEGHGGTIHATSNIGKGSMFTVSLPK 642


>gi|126738532|ref|ZP_01754237.1| hypothetical protein RSK20926_08707 [Roseobacter sp. SK209-2-6]
 gi|126720331|gb|EBA17037.1| hypothetical protein RSK20926_08707 [Roseobacter sp. SK209-2-6]
          Length = 515

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 159/383 (41%), Gaps = 15/383 (3%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            I  +  +    +    + K L   ++  +       + VW + + G + W+N++Y   +
Sbjct: 122 WIDGITRVQLRRSTLEEQNKSLDQELTTLRAAVHQAPYPVWLQSEEGLVTWSNLAYDDLS 181

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
                   K  G +   F   +   +    +  K    ++   E      Y I       
Sbjct: 182 N-------KLRGRNAD-FSVPMFSNLQEPMSSGKPERISIPLPESDKRLWYNISTTETEA 233

Query: 287 GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G    A+DV+     EI   + +    +    L++ +AIFD+NR L   N   ++L  + 
Sbjct: 234 GWLCHAVDVNAVVDAEIAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALP 293

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTL 400
            +FL++ P+     + LR    +PE  N+ +W+  I  + +++    +++TW LP+G   
Sbjct: 294 ASFLSSRPTLLTFFDRLRDQRMMPEPKNYSSWRHQIEDLLEAAAEGRYQETWSLPSGSVY 353

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            V    +P G   ++FE++T +V L  ++ + ++V    +D + E +AVF  +G +  SN
Sbjct: 354 SVSGRPHPDGAIAFLFEDITAEVTLTRQFRSELEVGQSILDQMDEAIAVFTNEGTMSFSN 413

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             +  LWK + +       I + A       N +  W      +   ++ R      ++L
Sbjct: 414 TTYHELWKMDPDTSFAKVSIMDAARVWQDTCNATSVWGEIRDFVAG-NEVRTPWWAHVQL 472

Query: 521 LSDSVLEYSIIPLPNAQTMLTFV 543
              + L   +  L N  T+++F 
Sbjct: 473 RDGTALVCKVSALQNGATLVSFQ 495


>gi|118445114|ref|YP_879185.1| two-component sensor histidine kinase [Clostridium novyi NT]
 gi|118135570|gb|ABK62614.1| two-component sensor histidine kinase [Clostridium novyi NT]
          Length = 779

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 159/384 (41%), Gaps = 19/384 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLS 475
           +  +    T      K     I+   + + +   D R    N A   F  L   +    +
Sbjct: 369 IYEKHKTRTALIESEKRLRTLINSTPDFICLKDGDCRWLEVNRATIDFLDLKDIDWKNKT 428

Query: 476 PGTHI--RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
               I  RN        Y   D   L    + ++ DE       L+  S   L+   IP+
Sbjct: 429 TAELIKSRNTHKDRLEKYETFDILTLEKRSMINYQDEF-----LLDDGSKITLDIFKIPV 483

Query: 534 PNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            ++       +    ++T  + AE      +E +    +++  F  ++S+EL++PL  I+
Sbjct: 484 FDSNGNPSGLVTIGHDLTPRIEAEENKKLLDETIS-YHQLRTKFFANISHELKTPLNLIL 542

Query: 589 GFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
                L++      L +   +Y + I  +S  ++ ++N++LD+  +D+G  + ++    +
Sbjct: 543 SAIQFLQSKGGDDFLRTNFDKYGDVIKDNSYRMVRIINNLLDITKIDSGYFETHFDNYNI 602

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +++ ++    ++ ++  N++    +D +      D   + +    +LSNA+ F+  G  
Sbjct: 603 VEVVEDICLFSSSYINSKNLQFVFDTDTEEKIVACDPHLIERTILNLLSNAIKFTKPGGK 662

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           + +           S+K+ G  I +   + +F RF          + G G+GLS+V+SF+
Sbjct: 663 ITVNIYDKGDFVDISIKDTGIGISKSHQEIIFERFFQIDKSLSRNQEGSGVGLSLVKSFV 722

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
           +LH G + ++S  +  +     +P
Sbjct: 723 DLHKGSIKLNSEIDRGSEFLITLP 746


>gi|187920903|ref|YP_001889935.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
 gi|187719341|gb|ACD20564.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
          Length = 721

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 7/257 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +           AER      EA    +  K  F+ ++S+ELR+PL  I+G+  +L+
Sbjct: 233 GARLYCAYRDEQDTAAEREARNLAEAA---NRAKGEFLANMSHELRTPLNGILGYAQILE 289

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +L+ +Q +    I  S   LL L+ D LD A ++AG +++    + L   ++ ++
Sbjct: 290 RDA--ALSERQRERASSIRHSGEHLLTLIEDTLDFARIEAGKLRVEIGDVPLAGFVDVIR 347

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             I  K  +  +       G       AD +RL Q+   +L+NA+ F+  G   +  +  
Sbjct: 348 DIIDVKAEQKRLDFICEITGDAPVGVRADERRLRQVMLNLLANAVKFTDSGCVTLHISRS 407

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           ++    F V++ G  I  D   ++F  F    A   +  G GLGL+I   F+   GG + 
Sbjct: 408 ESNRVRFEVRDTGIGIGHDQLNTIFEPFEQLGAAERRAGGAGLGLAISREFVRAMGGEIE 467

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +T    +P+
Sbjct: 468 VESRIGQGSTFRFELPA 484


>gi|17549399|ref|NP_522739.1| composite two-component sensor histidine kinase and response
           regulator hybrid transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431652|emb|CAD18329.1| probable composite two-component transcriptional regulatory (sensor
           histidine kinase and response regulator hybrid)
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 676

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 157/375 (41%), Gaps = 18/375 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---SNPAFRSLWKTEENRLSPGTHIRNI 483
           T+     +     +      ++++  D  +      NP F         R       R  
Sbjct: 153 TQQRVSQQRLLAALQASP--ISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRA 210

Query: 484 AATCSRYYNESDGWDLFAAIITSFDD---ERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           A+  +          L   +  +F     +R      +  L D   E  II L NA   +
Sbjct: 211 ASRLTDAGQRVIATGLPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGE--IIGLTNAVIDI 268

Query: 541 TFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           T     ++ RA    A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL    
Sbjct: 269 TEHRQAEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMRP 328

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                +   + +E I  S+   ++L++D+LD++ + +G + L    + L D+L   +++I
Sbjct: 329 YD--EAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETI 386

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                +  I +       +     D  RL Q+F  +L+NA+ F+ +G  V +        
Sbjct: 387 EPMARQKQITVDTEY-LPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADG 445

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH GH++ +S
Sbjct: 446 LVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHITAAS 505

Query: 777 SD-EGVTTINCRIPS 790
           S  +  TT+   +P 
Sbjct: 506 SGADLGTTMAVTLPL 520


>gi|15640331|ref|NP_229958.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
            N16961]
 gi|121591058|ref|ZP_01678371.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|153819600|ref|ZP_01972267.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|153822839|ref|ZP_01975506.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|227080517|ref|YP_002809068.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229506900|ref|ZP_04396408.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229509273|ref|ZP_04398756.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229516217|ref|ZP_04405665.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229606413|ref|YP_002877061.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254851437|ref|ZP_05240787.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|255744101|ref|ZP_05418055.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262161993|ref|ZP_06031010.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|298500935|ref|ZP_07010737.1| sensor histidine kinase [Vibrio cholerae MAK 757]
 gi|9654715|gb|AAF93477.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
            N16961]
 gi|121547091|gb|EAX57226.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|126509856|gb|EAZ72450.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|126519657|gb|EAZ76880.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|189008649|gb|ACD68566.1| sensor histidine kinase [Vibrio cholerae C6706]
 gi|227008405|gb|ACP04617.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229346643|gb|EEO11613.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229353588|gb|EEO18525.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229356005|gb|EEO20924.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229369068|gb|ACQ59491.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254847142|gb|EET25556.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|255738366|gb|EET93757.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262028371|gb|EEY47027.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|297540439|gb|EFH76498.1| sensor histidine kinase [Vibrio cholerae MAK 757]
          Length = 1147

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 169/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              L    +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSLLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|332702027|ref|ZP_08422115.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552176|gb|EGJ49220.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 604

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 159/381 (41%), Gaps = 30/381 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQG-ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              +   + ++ +  T+ K Q    +D++ EGV +   DGRI+  N A   ++   E+  
Sbjct: 236 INRMAESIQIQIETITVQKQQLVAILDNMKEGVMLLSADGRIQAVNRAMTLIFPGIEHC- 294

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL- 533
              T +  I         E    +       S           LE  S    +  I+PL 
Sbjct: 295 QGKTPLEAIMDPVLHQECERALENRETGAPVSLL---------LEPRSGVFYDVGIVPLK 345

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +   +   V   D  R           L+  + ++  FV +VS+ELR+PLT+I G+ + 
Sbjct: 346 ESGSGLGAVVVFHDISR-----------LKHLERVRRDFVANVSHELRTPLTSIKGYAET 394

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L++    S   +   +++ I  ++  +  ++ D+L+L+ ++A       + +     +  
Sbjct: 395 LQSDPAAS--PQAKGFLDIIVKNANHMTKILGDLLNLSRLEADRQAFELAPVDAQAAVMS 452

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +   +      + +      K    +AD  RL+Q+F  ++ NA+ +S +  +V +   
Sbjct: 453 AYRECESLGRGRGVGLVCRIPEKAVFVLADYDRLVQVFRNLIENALRYSPEHGSVTVFHQ 512

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRG-VGLGLSIVESFINLHGGH 771
             +G+ +F V + G  IP D    +F RF     HR +  G  GLGL+I +  +  HGG 
Sbjct: 513 TGDGEVLFGVSDRGPGIPRDEQAKIFERFYRVEKHRLKMGGSSGLGLAIAKHIVERHGGR 572

Query: 772 VSISSS---DEGVTTINCRIP 789
           + + S    ++   T    +P
Sbjct: 573 IWVVSPATGEDTGATFYFNMP 593



 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 40/138 (28%), Gaps = 16/138 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +  T+  Q      IL N+   + +   +  +Q  NR+   ++   +         + ++
Sbjct: 246 QIETITVQKQQLVAILDNMKEGVMLLSADGRIQAVNRAMTLIFP-GIEHCQGKTPLEAIM 304

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT---- 412
           +                  E      ++           +G    V +      G+    
Sbjct: 305 D-----------PVLHQECERALENRETGAPVSLLLEPRSGVFYDVGIVPLKESGSGLGA 353

Query: 413 IWMFENLTVQVDLETKYN 430
           + +F +++    LE    
Sbjct: 354 VVVFHDISRLKHLERVRR 371


>gi|298481013|ref|ZP_06999208.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298273036|gb|EFI14602.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 628

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/543 (20%), Positives = 214/543 (39%), Gaps = 44/543 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E GN   Y I  V +    A      S    +         I   L + I ++D +  
Sbjct: 106 TDEGGNEIIYGISEVQDGPDMA------SAYQALQYSERLLSNIFKYLPIGIELYDMDGV 159

Query: 328 LQFHNRSFVELWEID--LAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKE--NIFSVY 382
           L   N   +E++ I+     L  N  ++ +  + ++   K  E  ++    +   + S Y
Sbjct: 160 LVDLNDKELEMFHIEKKEDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYY 219

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           ++++       +    TL+   + +     + +  + T       K     +      D+
Sbjct: 220 QNTQKQGTIDLMTKVTTLYN--SEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDY 277

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G A F       LS   +           +  T + +I  T   ++ +       A 
Sbjct: 278 AKVGYAHFN-----ILSGHGYAQKSWYRNVGEADETPLSDIFGTYRHFHPDDR-----AL 327

Query: 503 IITSFDDERKSLQGTLE-----LLSDSVLEYSIIPL---------PNAQTMLTFVNVTDS 548
           +I   DD RK L   L      L  D    ++ + L            + +    ++T+ 
Sbjct: 328 LIRFLDDARKGLTTQLSKEMRVLREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITEL 387

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++  +     + 
Sbjct: 388 KRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTESAAEKELYNS 447

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            + + +     L+N   D++DL+ +++G ++L    + L +LL+E     A ++    + 
Sbjct: 448 LIGHNNKLLLNLIN---DVIDLSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVE 503

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +             D+ R+ QI S  LSNA+  ++ G  V +    D+      VK+ G 
Sbjct: 504 LLTNYPAHDSLVELDKLRIKQILSNFLSNALKNTTTGH-VEVFYEVDHQSVRIGVKDTGR 562

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP++M + +F RF       Q  G GLGL I +  +    G + + S     TT    +
Sbjct: 563 GIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIEL 620

Query: 789 PSK 791
           P +
Sbjct: 621 PCR 623


>gi|149280709|ref|ZP_01886819.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149228533|gb|EDM33942.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 536

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 35/375 (9%)

Query: 441 DHLSEGVAVFGPDGR--IKLSNP----AFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +++    A+   +    I  +NP                +       +         +  
Sbjct: 15  ENIIALEALLDREDIEMITTTNPNEALRLCWEMDIAIALVDVQMPEMDGFELVEILKSNP 74

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
              ++    +T+   E K +   +  L+   ++Y   PL    T     +    VR ER 
Sbjct: 75  RTKEILIIFVTAISKETKYV---VRGLNTGAVDYLYKPLDPFVTSAKVDSFIQLVRNERE 131

Query: 555 --------------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                         L +  E   +   IK +F+ ++S+E+R+P+  IIG   LLK +   
Sbjct: 132 IKRKNLELEAYQKELIKAKEQAEQGKRIKENFLANMSHEIRTPINGIIGLASLLKKT--- 188

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+  Q + +  +  SS  LL ++NDILDL+ +++G  K+N +   +     +V   +  
Sbjct: 189 TLSPDQEEMIRLLEISSDSLLGVINDILDLSKIESGKFKINRAETDVIKTCTDVTNLLRI 248

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
           +  E  + +    D  L +  +AD  RL QI   ++ NA+ F++ GS V LK    +   
Sbjct: 249 RAMEKKLDLITDYDPALPNLIMADSLRLNQILMNLIGNAIKFTASGS-VTLKVEALDKKG 307

Query: 718 ---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                 FSV + G  I +D    +F  F     +      G GLGLSIV++   L GG +
Sbjct: 308 NNIQVRFSVIDTGIGIAKDKIDKIFETFEQADEQTTIKFGGTGLGLSIVKNLAELKGGIL 367

Query: 773 SISSSDEGVTTINCR 787
            + S +   +T    
Sbjct: 368 EVFSEEGHGSTFCFT 382


>gi|114777683|ref|ZP_01452643.1| probable sensor/response regulator hybrid protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114551899|gb|EAU54433.1| probable sensor/response regulator hybrid protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 1043

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 133/321 (41%), Gaps = 20/321 (6%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                IR +             +D    I T  DDE       + +L  S+ E +     
Sbjct: 231 RWTDPIRKLVHFTHEL--AGGNFDAEPHISTRSDDE-------IGMLVTSIKEMAASLRQ 281

Query: 535 NAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +   +    N  +   A R   L E  +    A ++K+ F+ ++S+E+R+P+  +IG + 
Sbjct: 282 SYSRLEEHGNELEHEVARRTSQLAEARDRALAAAQVKSDFLANMSHEIRTPMNAVIGLSH 341

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L +     + + +Q  Y+  I A+S  LL ++NDILD + ++AG M +       +D L 
Sbjct: 342 LAREQ---AESHQQQDYLNKILAASKSLLIIINDILDFSKIEAGKMHMETVVFDFDDTLK 398

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---- 708
            +      +     +        +L     D  RL Q+   +++NA+ F+S+G  +    
Sbjct: 399 NIAGVGGLEAGRKGLDFLFDVPPQLPKLRGDPVRLGQVLLNLVNNAIKFTSRGEVIVTVK 458

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
           IL       +  FSV + G  + ++    +F+ F        R   G GLGL+I +  ++
Sbjct: 459 ILAMDEHETELSFSVSDTGIGMSQEQLAGIFDAFSQADTSITRKFGGTGLGLAICKQLVS 518

Query: 767 LHGGHVSISSSDEGVTTINCR 787
           +  G + + S+    +     
Sbjct: 519 MMQGEIGVESTPGEGSRFYFT 539


>gi|300867145|ref|ZP_07111810.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300334846|emb|CBN56976.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 886

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 120/267 (44%), Gaps = 16/267 (5%)

Query: 536 AQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           A  + T     ++   ER   LT   EA   A++ K+ F+ ++S+ELR+PL  I+G+  +
Sbjct: 391 AGQLRTSFTELETRVKERTAELTIAKEAADNANQAKSDFLANMSHELRTPLNGILGYAQI 450

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L   +  +L  K+   V  I    + LL L+ND+LDL+ ++A  ++L    I L   L  
Sbjct: 451 L--GRAKTLPEKERHGVSIIHQCGSHLLTLINDVLDLSKIEARKLELTPKAIHLPSFLQG 508

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V +    +  +  I      D  L +  + D +RL Q+   +L NA+ F+ KGS + LK 
Sbjct: 509 VVEICRVRSDQKGIEFIYQPDINLPTGIITDEKRLRQVLLNLLGNAIKFTDKGS-ITLKV 567

Query: 713 ARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESF 764
                          F V + G  I  D    +F  F      + Q  G GLGL+I +  
Sbjct: 568 EVIASNATMPLPQLKFQVLDTGVGIASDQVNKLFQEFEQVGDRKRQAEGTGLGLAISQKI 627

Query: 765 INLHGGHVSISSSDEGVTTINCR--IP 789
           + L GG + + S     +    +  +P
Sbjct: 628 VELMGGKIEVESHLGIGSNFYFQVALP 654


>gi|194014833|ref|ZP_03053450.1| sporulation sensor histidine kinase E [Bacillus pumilus ATCC 7061]
 gi|194013859|gb|EDW23424.1| sporulation sensor histidine kinase E [Bacillus pumilus ATCC 7061]
          Length = 731

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/632 (17%), Positives = 253/632 (40%), Gaps = 48/632 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  +++   +  ++ S +  +FK LFD     +   DQ G ++ AN S+ ++ E +    
Sbjct: 128 VMRDISSKKILERERSMNEQLFKDLFDRAIDGMVIFDQDGCMIDANHSFCQSFELQKTDL 187

Query: 234 QKAIGES--RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
                     +     ++  + S     K   E   TL+ G  K +++    N      +
Sbjct: 188 TDRYLHEFVDEENLPSLQHLLTSLKETGKAKGELPVTLQSGQYKLFELTITSNVMSGFYM 247

Query: 292 AI--DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           +I  D++++  + ++L        +I  N   AI I+  +  +   N S   ++E+ +  
Sbjct: 248 SIMRDITEKRLMEEKLLKSEERFRKIFENAMDAIIIWADDGEIVRANESACRIFELPMHS 307

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L       +L +FL  +++      ++  +      ++  E  +  + + NGQ   +  T
Sbjct: 308 LIGK----KLTDFLVKSDQR-----YRPTRRRYIRNHEIRE--ELLFRMANGQFKELEFT 356

Query: 406 SN---PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           S      G  + +  N++ +  +E +         +  +   +G+ +F    RI   NP+
Sbjct: 357 SKHAVLEGQHLTILRNVSDRKRMEEELRESELKFRKVFNGSMDGIVLFDNQYRIIEVNPS 416

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              L   + + L+      N+    + Y  E       A  +   D+E   +   L    
Sbjct: 417 ASELLGLKSDHLTEM----NLFHILAPYQIEHLAQPAQAMSLDEMDNE---VPFVLNHPD 469

Query: 523 DSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +LE+S    + +   +  F +VT+    E  + + +                +++E+R
Sbjct: 470 QRILEFSFKRNIIHNMNLAIFRDVTERKELEERVRKSDTLHVVG-----ELAAGIAHEIR 524

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+T + GF  LLK    G++  + S Y   I++    + +++ + L LA   A    + 
Sbjct: 525 NPMTALKGFIQLLK----GNIEGEYSLYFNVITSELKRIESIITEFLILAKPQA----IV 576

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +    +  ++ +    +  + +  N+++ +    ++     ++ +L Q+F  IL NA++ 
Sbjct: 577 FEEKNVVQIVKDTMDLLHAQANLGNVQMHLNVIDEIPLIYCEQNQLKQVFINILKNAIEV 636

Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
             +   V +   R      + S+++ G  + ED  + +   F       + RG GLGL +
Sbjct: 637 MPRKGNVYVSIQRKGEEHIVISLRDEGCGMAEDKLRRLGEPFY----TTKERGTGLGLMV 692

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               I  H G + + S +   T  +  +P ++
Sbjct: 693 SYKIIEEHQGTIEVESEEGVGTVFHLTLPLRQ 724



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 109/288 (37%), Gaps = 32/288 (11%)

Query: 292 AIDVSKEIT----VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           A D+ K       +  +L     +L+    AI IFDQ+  +   N +   L +     L 
Sbjct: 8   AEDIRKLEKENEYLRTELMQQKMLLNKTLDAIFIFDQHLNIIQANEATCRLVQTPKEDLL 67

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTS 406
               N  +L+FL    K   + +   +       ++     ++    L NG+T ++   +
Sbjct: 68  ----NKSVLDFLYGIPKDKIECSLDLF-------FRKGTLKREISIQLENGETKYIEFVA 116

Query: 407 NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                    I +  +++ +  LE + +   ++  +  D   +G+ +F  DG +  +N +F
Sbjct: 117 EHDTMNQQYIVVMRDISSKKILERERSMNEQLFKDLFDRAIDGMVIFDQDGCMIDANHSF 176

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLEL 520
              ++ ++          ++       + + +       ++TS  +  K+   L  TL+ 
Sbjct: 177 CQSFELQKT---------DLTDRYLHEFVDEENLPSLQHLLTSLKETGKAKGELPVTLQS 227

Query: 521 LSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               + E +I   + +   M    ++T+    E  L +  E  RK  E
Sbjct: 228 GQYKLFELTITSNVMSGFYMSIMRDITEKRLMEEKLLKSEERFRKIFE 275


>gi|182678851|ref|YP_001832997.1| response regulator receiver sensor signal transduction histidine
           kinase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634734|gb|ACB95508.1| response regulator receiver sensor signal transduction histidine
           kinase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 389

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 4/260 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +   T     +  R   AL    E    A++ K++F+  +S+ELR+PL  IIGF++L+ 
Sbjct: 119 ERAFETHHLRMEKSRMIEALRLAKEGAEAANQAKSNFLATISHELRTPLNAIIGFSNLIL 178

Query: 596 TSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +G L N +  +Y+  I+AS   LL+++NDILDL   +AG  +L  S I   D +  V
Sbjct: 179 MELMGPLSNERYREYLRDINASGEHLLSIINDILDLTKAEAGQTELFESVIHPRDAIIPV 238

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA- 713
           ++ +  K  E  + +       L    AD ++  QIF  +LSNA+ F+  G ++ + A  
Sbjct: 239 ERLLMPKAREAGLTLTSNITEHLPLLRADERKAKQIFLNLLSNAVKFTPPGGSIEIDAHL 298

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
              GD   +V + G  I  +    V   FV       RR  G GLGL +V+SF+ LH G 
Sbjct: 299 THKGDLAIAVADTGIGIAPEHIDRVCEPFVQIDSSLSRRHDGTGLGLPLVKSFMELHEGS 358

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S     T      P+K
Sbjct: 359 LHLRSKSGIGTCAIVTFPAK 378


>gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli
           LT-68]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|289674477|ref|ZP_06495367.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 595

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 148/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGH---------SLGEALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7
           EDL933]
 gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli O157:H7 str. EDL933]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
 gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|150006769|ref|YP_001301512.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935193|gb|ABR41890.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 622

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/413 (23%), Positives = 182/413 (44%), Gaps = 31/413 (7%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL------------VKVQGETIDHLSEGV 447
             + +        I    N++  V+ E     L            + +Q   I   S   
Sbjct: 213 FKLRLVPVHDRYVIIYIRNVSELVEQEKANEALSSKLSESRMMMELALQNSKITTYSFNF 272

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           + F    ++   N  F   + T  + L     I           +  D + LF  I T+ 
Sbjct: 273 SRFKSCDKV-HCNRCF-QFYGTTNSLLKRNQFICQALPQLRHPDDSGDFFYLFNTIRTNK 330

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQ--------TMLTFVNVTDSVRAERALTEKN 559
            DE K +   L+   ++   Y +I   + +         +   ++  + +  E  L    
Sbjct: 331 LDEYK-IDFRLKNDDNTYRIYEVIGKTHEKDENGFPNLIVGCMIDDQERLEFEEDLISAK 389

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L   +  Y+  I  ++ +
Sbjct: 390 EKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDLEL---RQNYISLIKMNNDL 446

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E  + I + +   +  
Sbjct: 447 LLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPE-GVEITLDACPDII- 504

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
           F  DR RL QI   +L+NA+  + KGS        D G  + F V + G  IP+D   ++
Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCGIPKDELDNI 564

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P K
Sbjct: 565 FARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLPMK 615


>gi|166032342|ref|ZP_02235171.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC
           27755]
 gi|166028065|gb|EDR46822.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC
           27755]
          Length = 859

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/461 (17%), Positives = 187/461 (40%), Gaps = 50/461 (10%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM--------------- 415
           ++ W++NI S Y     +     L  G    +    +P  G IW+               
Sbjct: 259 YRIWRDNIPSEYTEKVDNCVKETLEKGYADVIYPWHHPTRGKIWIRCGGVRPKDYEGIGV 318

Query: 416 -----FENLTVQVDLETKYNTLVKVQGETI----------DHLSEGVAVFGPDGRIKLSN 460
                 +++T  ++ E ++ +L     E            D++ +   +  P+   K++N
Sbjct: 319 CIRGYHQDITKNIEREMRFRSLKDATSEIYYAIYNINLNTDYMEQ---ISEPNKMYKIAN 375

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA---IITSFDDERKSLQGT 517
               +  K  E          +      ++++ S   +       +   + +++   +  
Sbjct: 376 DRGIASEKLMEFCTFQIH--EDYQEEMRKFFDLSTLGERLKEKNFVSREYPNKQGIWRCA 433

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L +  + V   S+  +     ++      +    ++ L +  +  R A++ K  F++ +S
Sbjct: 434 LFIAQEKVPTESVTEVLYVTQIIDDYKQKEL-AYQQELVKALKEARIANDAKAEFLRKMS 492

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +++R+P+  I+G  D+    K      +  +  E +  ++  LL+LVND+LD+  ++   
Sbjct: 493 HDIRTPINGIMGMLDI--EEKNWDDPERLKECHEKMKVTAGNLLHLVNDVLDMNKLETSR 550

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV--ISDGKLGSFVADRQRLLQIFSKIL 695
           +++ +    + ++L      + ++  +  + ++   +S+ +    V       QIF+ IL
Sbjct: 551 LEVEHKPFDIREVLRGCWTDLESQAEKMGLELEKSGVSEIECPHVVGSPMYFRQIFANIL 610

Query: 696 SNAMDFSSKGSTVILKA---ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
           SNA+ ++     + L+    +R   D +  FSV + G  + E+  K +F  F       R
Sbjct: 611 SNAVKYNKIHGKITLRVDMVSRTEDDVVYRFSVSDTGIGMNEEFQKHIFETFTQEDTGAR 670

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              RG GLG++I +  ++  GG + I S     +T    +P
Sbjct: 671 TVYRGTGLGMAIAKKLVDALGGTIKIKSKKNVGSTFILVLP 711


>gi|153838024|ref|ZP_01990691.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
 gi|149748558|gb|EDM59417.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
          Length = 806

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++    + +   K +F+  +S+E+R+P+  ++G   +L  +    L  +Q +++  + 
Sbjct: 339 LEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLTDEQRKHLSTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G ++ + S   +  ++  +K    T   E  ++ KV S 
Sbjct: 396 DSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQFKVTSL 455

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
             +G +   D+ RL Q+   +L+NA+ F+ +G  V +  +     D    + ++K+ G  
Sbjct: 456 VPVGRWYDNDKARLRQVLFNLLNNAVKFTDRG-IVEVTLSEQTHYDKTVLVIAIKDTGIG 514

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  K +F  F        RR  G GLGL+IV+      GGHV++ S +   TT    
Sbjct: 515 ISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIGTTFTVE 574


>gi|134056912|emb|CAK44259.1| unnamed protein product [Aspergillus niger]
          Length = 2262

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+  +IG ++LLK +K   L+ +Q +YV
Sbjct: 1796 AEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGTK---LDREQDEYV 1852

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1853 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETI 1912

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---DFIFSVK 724
               D      V   D  RL QIF  +LSN+  F+ KGS TV  K +R+         SV 
Sbjct: 1913 EDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLECSVS 1972

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  I E+    +F  F    +       G GLGLSI ++ I  + GG + + S+    
Sbjct: 1973 DTGIGISEEQKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTSGVG 2032

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2033 TTVTFHL 2039


>gi|323495155|ref|ZP_08100240.1| signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323310595|gb|EGA63774.1| signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 810

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + + + K++F+  +S+E+R+P+  ++G   +L+ +    LN +Q ++++ + 
Sbjct: 339 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILQRT---DLNEEQRKHLKTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + V+ G ++L Y+   L  ++  V     T   E  ++ KV S+
Sbjct: 396 ESGEHMMTLLNEILDFSKVEQGHLELEYTPFPLESIIGSVNSVYYTLCAEKGLQFKVYSE 455

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSI 730
                 +  D+ RL QI   +L+NA+ F+S+G   V  K  + +G    +  V++ G  I
Sbjct: 456 VPTTRWYRGDKARLRQILFNLLNNAVKFTSRGYVEVYFKEQQRHGRNYLLIRVRDTGIGI 515

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +D  + VF  F        RR  G GLGL+IV+    L  G V ++S     ++    +
Sbjct: 516 AKDAQQKVFKPFEQAESSTTRRFGGTGLGLAIVKQLCELMEGEVKLASELGIGSSFEVAL 575


>gi|218438951|ref|YP_002377280.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171679|gb|ACK70412.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 658

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/404 (20%), Positives = 167/404 (41%), Gaps = 26/404 (6%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   +D L    ++G  +   +  + L NPA R
Sbjct: 247 GELIGSFNEMAERLERYEEQNIEEMTAEKAKLDTLVSTIADGAILLDTNLSLLLVNPAAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLELL 521
            L+  E   +     +       +    E          + S D   +S   +Q      
Sbjct: 307 RLFGWENRDVIGKNVLHLFPPELTVTLTEPLYQFAVGDAVESLDAHFQSNFQIQTITHEN 366

Query: 522 SDSVLEYSII---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQH 575
             S  E+ +    P P    +L            + +    + + +    +E K+ F+ +
Sbjct: 367 HSSQGEFRVTLTHPSPRTVRILLTQVFDQYRENVKGIAMTVQDITREVELNEAKSQFISN 426

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PL NI  F + L        ++++ +++E  +  +  L  LVND+LDL+ +++
Sbjct: 427 VSHELRTPLFNIKSFIETLTEFGEDLTDNERREFLETANHETDRLTRLVNDVLDLSRLES 486

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             +  ++  + L+ L+ +V ++      + NI +    +  L S +     LLQ+ + ++
Sbjct: 487 SRI-YHFDAVDLSQLIEQVLRTYQLNAKDKNIELSQEIEPNLSSVLGHYDLLLQVMTNLV 545

Query: 696 SNAMDFSSKGSTVILKAARDNGD---------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            N++ F+  G  ++++A +                 V + G  I  +  +++F+RF    
Sbjct: 546 GNSLKFTEPGGRIVIRAYKVKTHPDYPKKTPQVRVEVSDTGIGIDLEDQQAIFDRFFRVE 605

Query: 747 HRGQR-RGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRI 788
           +R     G GLGLSIV++ I   H   V + S     TT    +
Sbjct: 606 NRVHTLEGTGLGLSIVKNIIEEKHHSKVYLISEVGVGTTFWFEL 649


>gi|162455496|ref|YP_001617863.1| two component sensor kinase [Sorangium cellulosum 'So ce 56']
 gi|161166078|emb|CAN97383.1| two component sensor kinase [Sorangium cellulosum 'So ce 56']
          Length = 520

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 124/240 (51%), Gaps = 3/240 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AER      +     D  +++F+  +S+ELR+PL  I+GF  +L++   G L+    + +
Sbjct: 247 AERTYRADLQQASAMDRERSAFLAGLSHELRTPLNAILGFAHVLESEVDGPLSQDAREAL 306

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   L  L++DILDL+ ++ G ++L+   + L  L+++V +  +    +  ++++
Sbjct: 307 SVIRQSGEHLRTLIDDILDLSALETGKLQLSRRAVNLRALVDQVMREASAAARDKPLQLR 366

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V  D  L +  AD +R+ QI + ++SNA+ F+++GS V +            V++ G  I
Sbjct: 367 VTGDHALVA-HADPRRVRQILTNLVSNAVKFTARGS-VTVNITGRGRYAAIVVQDTGPGI 424

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           P +   +VF  +      R +R G GLGLSI    + +HGG + + S     +T    +P
Sbjct: 425 PPEETSAVFEEYRQTGDVRSRRAGTGLGLSIARRLVLMHGGTIQLESELGRGSTFTITLP 484


>gi|322643371|gb|EFY39935.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
          Length = 802

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------ 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|255016502|ref|ZP_05288628.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 622

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/413 (23%), Positives = 182/413 (44%), Gaps = 31/413 (7%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL------------VKVQGETIDHLSEGV 447
             + +        I    N++  V+ E     L            + +Q   I   S   
Sbjct: 213 FKLRLVPVHDRYVIIYIRNVSELVEQEKANEALSSKLSESRMMMELALQNSKITTYSFNF 272

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           + F    ++   N  F   + T  + L     I           +  D + LF  I T+ 
Sbjct: 273 SRFKSCDKV-HCNRCF-QFYGTTNSLLKRNQFICQALPQLRHPDDSGDFFYLFNTIRTNK 330

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQ--------TMLTFVNVTDSVRAERALTEKN 559
            DE K +   L+   ++   Y +I   + +         +   ++  + +  E  L    
Sbjct: 331 LDEYK-IDFRLKNDDNTYRIYEVIGKTHEKDENGFPNLIVGCMIDDQERLEFEEDLIRAK 389

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L   +  Y+  I  ++ +
Sbjct: 390 EKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDLEL---RQNYISLIKMNNDL 446

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E  + I + +   +  
Sbjct: 447 LLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPE-GVEITLDACPDII- 504

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
           F  DR RL QI   +L+NA+  + KGS        D G  + F V + G  IP+D   ++
Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCGIPKDELDNI 564

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P K
Sbjct: 565 FARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLPMK 615


>gi|255013997|ref|ZP_05286123.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
 gi|256839663|ref|ZP_05545172.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738593|gb|EEU51918.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 793

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/497 (16%), Positives = 187/497 (37%), Gaps = 40/497 (8%)

Query: 321 IFDQNRYLQFHNRSFVELWEID----LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           + D++  L + N  + ++         A     P       +  + N L + +      E
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEEYEALFHNKPDLY-FKGYDEAWNILSKNV-----YE 78

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNTLVK 434
            I +     ET          +   +  T   +   G    +  +T   D+  +      
Sbjct: 79  TIANKASGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIE--- 135

Query: 435 VQGETIDHLSEGVAV---FGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            Q  T D++  G         DG   +  +N  +      ++N     +    +  T   
Sbjct: 136 -QTITYDNIP-GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSRN 193

Query: 490 YYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLE-------YSIIPLPNAQTMLT 541
             N      L    +      + K+  G    L+   +        Y I+ +        
Sbjct: 194 TMNAHIPCMLKGEPVHFVIQSKDKNGNGAWLQLNGECIGWEGDEPIYLIVYINITDITEQ 253

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                   +  + L E  ++  +A++ K+ F+  +S+++R+P+  I+G   + K      
Sbjct: 254 RELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV--D 311

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +    +E I+ +S +LL+L+N++LD++ +++G + L+     + +LL ++   +  +
Sbjct: 312 ERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQPE 371

Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---- 716
           +      + +   + +  +   D QR+ Q+   ILSNA+ ++ +   + ++    +    
Sbjct: 372 IKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKDPHNG 431

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
            G++ F  ++NG  +  +    +F  F   +     + +G GLG+SI    I + GG + 
Sbjct: 432 IGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMGGDIK 491

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +     +P 
Sbjct: 492 VESEYGKGSRFTIDMPL 508



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 122/400 (30%), Gaps = 34/400 (8%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR--------MISSSALE 259
             D+   +LWAN  Y          ++        L+ +   +           + +   
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEEYEALFHNKPDLYFKGYDEAWNILSKNVYETIANKA 84

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE---ILHNLT 316
             +   +        +  KI        + GI I  +    V D +    E      N+ 
Sbjct: 85  SGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQTITYDNIP 144

Query: 317 VAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             I+      D +  L   N  +++   ID     +      L E  R  N +   +   
Sbjct: 145 GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSR--NTMNAHIPCM 202

Query: 373 TWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPRGGTIWM-FENLTVQVDLETKYN 430
              E +  V +S + + +  W   NG+ +       P    +++   ++T Q +L+ K  
Sbjct: 203 LKGEPVHFVIQSKDKNGNGAWLQLNGECIGWEGDE-PIYLIVYINITDITEQRELQKKLE 261

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              K   E +    +       D   ++S+     +            H+          
Sbjct: 262 KQSKQLKEALKSAEQANQA-KSDFLARMSHDIRTPMNAIMGMATIAKAHVDERERILDCM 320

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
              +    L  ++I    D  K   G L L  D   E+++  L     +   +   +   
Sbjct: 321 EKINGASKLLLSLINEVLDMSKIESGRLILSED---EFNVGELLQDLVV---MMQPEIKN 374

Query: 551 AERALTEKNEALRKAD------EIKNSFVQHVSYELR-SP 583
            ++ L    + LR  +       IK   +  +S  ++ +P
Sbjct: 375 KQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTP 414


>gi|81325113|sp|Q9RDT3|WALK_STAAU RecName: Full=Sensor protein kinase walK
 gi|6689207|emb|CAB65401.1| VicK protein [Staphylococcus aureus]
          Length = 415

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 153/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GRI
Sbjct: 33  TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRI 92

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +  +    +   +  +   + +   ++E   +  
Sbjct: 93  RIVNDMALKMLGMAKEDIIGYYMLSVL--SLEDEFKLEEIQENNDSFLLDLNEEEGLIAR 150

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 151 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 190

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 191 SHELRTPLTSMNSYIEALEEGAWKD-EELAPQFLSVTREETERMIRLVNDLLQLSKMDNE 249

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++N   I  N  +N++           +         K      D  ++ Q+F  +++
Sbjct: 250 SDQINKEIIDFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 307

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 308 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 367

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 368 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 406


>gi|37678828|ref|NP_933437.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus
           YJ016]
 gi|37197569|dbj|BAC93408.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 780

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +     +G     N A   L   +E++L   +  
Sbjct: 144 ERTQVELAERTAL--LRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   ++D          +++   +   G          E   +P  +     
Sbjct: 202 DVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDG-----RKHYFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++  
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q +Y++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A 
Sbjct: 313 -LTDEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISAL 371

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +    +L  +   D  RL Q+   ++SNAM F+ +G  V  + +  +   
Sbjct: 372 MAEQKGLRFDLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTVSSEVEEDF 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              I  V++ G  IPE     +F  +             G G+GL++    IN+  G ++
Sbjct: 432 ATIIIEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDIT 491

Query: 774 ISSSDEGVTTINCRI 788
           +SS +   +T    I
Sbjct: 492 VSSEEGFGSTFTISI 506



 Score = 44.5 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 56/149 (37%), Gaps = 15/149 (10%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +  + +E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ T   G
Sbjct: 133 MKDLENEVFQRERTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEELT---G 189

Query: 231 IVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVL- 283
               + +G S   ++ +E+ ++++ +             E       G    +++ +V  
Sbjct: 190 KKEHQLVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDGRKHYFELRKVPF 249

Query: 284 -----NSFGEAGIAIDVSKEITVNDQLTH 307
                   G  G   D+++     + L  
Sbjct: 250 YSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|283796048|ref|ZP_06345201.1| PAS domain protein [Clostridium sp. M62/1]
 gi|291076258|gb|EFE13622.1| PAS domain protein [Clostridium sp. M62/1]
          Length = 889

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/567 (19%), Positives = 222/567 (39%), Gaps = 55/567 (9%)

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTY--EILHNLTVAIA 320
           T+ ++ H   +   I R      +AG  +  D+ +     +QL H    +++  +   I+
Sbjct: 33  TIFSVRHLMERLDDIRRHPFQVMDAGGTLQNDMDRIRNSFEQLKHINTPKVVEEIRGEIS 92

Query: 321 IF--DQNRYLQFHNRSFV----ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN---- 370
           +   D +R ++    S++    +L  +           D  L++  + ++  +++     
Sbjct: 93  LIYEDTDRQMEILRESYLGDQEDLENLSELMDEIGKEQDAFLDYAAADDRSEDEIVSYST 152

Query: 371 ------WKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRGG----TIWMFENL 419
                 ++ +   +  V   +    + ++   +      I+TS    G     +++++ L
Sbjct: 153 RHLEELYQEFDSQLGEVLDFARNKVEYFYFEADRFCFFAILTSCLVFGAALIILFIYKYL 212

Query: 420 T-VQVDLETKYNTLVKVQGETIDHL--------SEGVAVFGPDGRIKLSNPAFRSLWKTE 470
              Q +   + N L ++    ID++         E   +    GRI    P  + +  T 
Sbjct: 213 LGRQTEQLKRQNQLFELLSRNIDNIFMINDLHHPERNYISENAGRILGFKPDPKKVSPTI 272

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                       +         ES     F     +   ER  L  T  + ++    +  
Sbjct: 273 LFEYMDEQDREKVKRVFD-TVGESYWSCTFHYRHPALAGERIFLLQTYRIWTEGEDRFIT 331

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +     Q + T          ++ L    +   KA+  K+ F+  +S+E+R+P+  IIG 
Sbjct: 332 VLTDQTQILST----------QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM 381

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             ++    LG  +S+    +  I+ SS  LL L+ND+LD++ +++G +++          
Sbjct: 382 -GMIAMQNLGD-SSRVEDCIRKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLF 439

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L  V   I+ +  +  +   VI  G +      D  R+ QI   +LSNA+ F+ +G +++
Sbjct: 440 LESVSNVISGQARDKGLNFDVIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIV 499

Query: 710 LKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVE 762
           L+ A+ + D       F V + G  I E   + +F  F            G GLGLSI  
Sbjct: 500 LRIAKMDEDSTTVWLKFEVSDTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISR 559

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
            F  L  G +++SS     +T    +P
Sbjct: 560 RFAELMDGRLTVSSQVGKGSTFTLTMP 586


>gi|332702262|ref|ZP_08422350.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552411|gb|EGJ49455.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 556

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 155/386 (40%), Gaps = 27/386 (6%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E   + +       I  + +GV VF  + R+  +NPA R ++               +  
Sbjct: 26  EAIADAIQPSLEAAIASMPDGVMVFDAELRLARANPAARRIFGLGSEECRLSVTDLALVL 85

Query: 486 TCSRY------YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +R         +      +     + +    ++ G    L  S    +  P      +
Sbjct: 86  LPARLGGTPLSVEDMPWMRAWRGEAVASERLMANVGGQTRHLLCSAAPIASGPDGRLGVV 145

Query: 540 LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +T  +++D + A+         LR A          K+ F+ ++S+E+R+PL  I+G T+
Sbjct: 146 VTVRDISDQIDADSQREALLLELRLAKAAAEDASRAKSLFLANMSHEIRTPLNGIMGMTE 205

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L    +      +  QY+E +  S+  LL++VNDILDL+ V++G  +L     V+ D L 
Sbjct: 206 LALAKE---PRKEVRQYLELLKQSAHSLLDIVNDILDLSRVESGETQLVLREFVVRDELE 262

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
              + +A    +  +   +     +   +  D QRL QI   +  NA+ F+ +G   +L 
Sbjct: 263 AAVRPLALSAKQKGLAFSMDVAPDVPEILTGDPQRLRQIMINLTGNAVKFTRQGGIAVLV 322

Query: 712 ----AARD--NGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIV 761
                 RD   G  +    V++ G  I  +   +VF RF + A        G GLGL+I 
Sbjct: 323 DIDALDRDPRGGKVLMHAQVRDTGIGIAPEHLANVFERFFTTAALDCPDSGGTGLGLAIS 382

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
              + +  G + + S     +T +  
Sbjct: 383 RRLVEMMDGEIWVESVQGRGSTFHFT 408



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 18/142 (12%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL- 356
           E   +         + ++   + +FD    L   N +   ++ +       + ++  L+ 
Sbjct: 26  EAIADAIQPSLEAAIASMPDGVMVFDAELRLARANPAARRIFGLGSEECRLSVTDLALVL 85

Query: 357 --EFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVI-----VTSNP 408
               L       E + W + W+    +  +             GQT H++     + S P
Sbjct: 86  LPARLGGTPLSVEDMPWMRAWRGEAVASERLMANV-------GGQTRHLLCSAAPIASGP 138

Query: 409 RG--GTIWMFENLTVQVDLETK 428
            G  G +    +++ Q+D +++
Sbjct: 139 DGRLGVVVTVRDISDQIDADSQ 160


>gi|329298019|ref|ZP_08255355.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Plautia stali symbiont]
          Length = 950

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 128/254 (50%), Gaps = 7/254 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  D+L+T  
Sbjct: 442 ICVLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDMLQTK- 500

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             SL       V  ++ SS++LL +++DILD + +++  +K+        +++N +  + 
Sbjct: 501 --SLPKGVDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQRPFSPREVVNHIASNY 558

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + +    + + V  +  +  +   D  RL Q+ S +L+NA+ F+  G  +IL A    G
Sbjct: 559 LSLVVRKRLTLYVFIENDVPLALDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVKEG 617

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  IP      +F+ F       +   +G GLGL+I E  IN+  G + + 
Sbjct: 618 YLAFRVRDTGVGIPAKEITRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVD 677

Query: 776 SSDEGVTTINCRIP 789
           S     +    RIP
Sbjct: 678 SEPGMGSQFVVRIP 691


>gi|300936299|ref|ZP_07151231.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300458551|gb|EFK22044.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 918

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  +++ +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLKLTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|159905929|ref|YP_001549591.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887422|gb|ABX02359.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 613

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 4/238 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    + L++ D++K+  +  VS+ELR+PLT+I G+ DLLK    G LN KQ ++V  I
Sbjct: 376 ELKNSYDELKEVDDLKSELISIVSHELRTPLTSIRGYIDLLKDETAGKLNEKQKEFVSVI 435

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S +S  L  + +++ DL TVD   +      + + + + E+  S+       NI +    
Sbjct: 436 SENSERLKRITDNMSDLVTVDNEHLNTKLDKLNIKNAVEEIVSSLQHFADSRNIILLEDV 495

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D        D+ ++ Q+ + ++ NA+ FS   + V +    DNG+    + + G  IP++
Sbjct: 496 DD--LYIKGDKSKIHQVLANLIENAVKFSKTQTKVTVTGYEDNGNIHLEITDQGPGIPKE 553

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF+RF       +R   G GLGL++ +  +  HGG + + S     T ++   P
Sbjct: 554 YLDKVFDRFYQIDSSSKRKIGGSGLGLAVCKKIVESHGGSIWVESRIGKGTNVHVLFP 611


>gi|239944730|ref|ZP_04696667.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 15998]
 gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 11379]
          Length = 1809

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 25/315 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +     D  + L+   + L  S  E      L   Q     V  T+   A + L E+ 
Sbjct: 1262 QELTEQLRDRSQELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERA 1321

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ E I  + + 
Sbjct: 1322 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSD 1381

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  
Sbjct: 1382 LLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPA 1441

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KAARDNGD 718
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         + D
Sbjct: 1442 TLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADAD 1501

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I FSV + G  I       +F  F         +  G GLGLSI      L GG +  +
Sbjct: 1502 LIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAA 1561

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1562 SEPGRGSTFTLYLPL 1576


>gi|126175349|ref|YP_001051498.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS155]
 gi|125998554|gb|ABN62629.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 932

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 185/532 (34%), Gaps = 63/532 (11%)

Query: 275 KSYKIVRVLNSFGE-----AGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQN 325
           + Y++   L   G        IA ++       +               L  +IAIFD N
Sbjct: 39  RFYELEDTLVEQGSNIIEPLSIASEIGLVANDREATKRLLAAAQLNKSTLVKSIAIFDAN 98

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             L   +      +  D   +    + + L        ++    +    +  IFS   S+
Sbjct: 99  NQLFVTSH-----YHKDFEIMRYKEALNTL-----HKTEIEHVGDSLILRTPIFSTGPSA 148

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                     +GQ L          G I +            K   L++     +     
Sbjct: 149 APANYDIQTDDGQLL----------GYISIIN----------KERALLEQHRAAVAAFI- 187

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + + G    +            T     +    I  +    ++         L   +I 
Sbjct: 188 -IVLIGVQLNLLF----------TFRLVKNVTQPITEMVRVVAKIREGKLDARLDGNLIG 236

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             D  ++ +      LS+   E           +   +   +    E  L    +   +A
Sbjct: 237 ELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVE--LDLAKKRALEA 294

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y++ I  S+T LL ++N
Sbjct: 295 SRIKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYIKTIERSATNLLGIIN 351

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG M L      L + + +    I+       + + V     +  +   D 
Sbjct: 352 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 411

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFN 740
            R+ QI + ++ NA+ F+  GS  V ++    + +       V + G  I E     +F 
Sbjct: 412 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 471

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F        RR  G GLGL I +  +N  GG +  +SS E  +     +P 
Sbjct: 472 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 523


>gi|116626863|ref|YP_829019.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230025|gb|ABJ88734.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 822

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 157/387 (40%), Gaps = 44/387 (11%)

Query: 425 LETKYNTLVKVQGETID----------HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           LE K   L ++ G  +D           + +G+ +  PDGRI  +N +  ++       L
Sbjct: 460 LEWKARMLSELNGRLLDRAKFVNFALRSIEDGLVIADPDGRITFANRSAGAILGATARGL 519

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII--- 531
                   +  + ++  N S   ++ A ++     ER  ++  + +    + +Y++    
Sbjct: 520 --------VGQSLAQRLNGSVNAEVLARLVA----ERGHIEHEITIRGSRMRQYTLRLAT 567

Query: 532 ----PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                  +   +    +++D  R             +  + KN  +  VS+E+R+PLT I
Sbjct: 568 VSADDSGDGPVLGIVGSLSDVTRQ-----------HELQQTKNDVISLVSHEMRTPLTAI 616

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G T+LL         S++ +    I+     L  ++ + LD+  +++G  ++  + + +
Sbjct: 617 QGMTELLA--AYDVEPSRRREMNLAINDEVKRLARMITEYLDITRLESGATQMRMAAVRV 674

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             +L  +   I     +  I++       L + +AD     +    +++NA+ +S  G+T
Sbjct: 675 ESILERILILIEPIAAQRQIQLVRQIPADLPAVLADPDLFSRAVENLVTNAVKYSPNGTT 734

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           V + A  +       V + G  IPE     +F +F            G GLGLS+V    
Sbjct: 735 VTVSARAEEDCLWIDVADQGYGIPETDLSRIFEKFYRVPRVQDAGVPGTGLGLSLVREIA 794

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            LH G V++ S     +T   RIP  E
Sbjct: 795 ELHHGSVAVRSEVGKGSTFTLRIPRSE 821



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L ++   + I D +  + F NRS   +       L    S  + L    +A  L   +  
Sbjct: 485 LRSIEDGLVIADPDGRITFANRSAGAILGATARGLVGQ-SLAQRLNGSVNAEVLARLVAE 543

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETK 428
           +   E+     + S   + T  L       V    +  G   G +    ++T Q +L+  
Sbjct: 544 RGHIEHEI-TIRGSRMRQYTLRLAT-----VSADDSGDGPVLGIVGSLSDVTRQHELQQT 597

Query: 429 YNTLV-------KVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHI 480
            N ++       +     I  ++E +A +  +  R +  N A     K     ++    I
Sbjct: 598 KNDVISLVSHEMRTPLTAIQGMTELLAAYDVEPSRRREMNLAINDEVKRLARMITEYLDI 657

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSD 523
             + +  ++    +   +     I    +    ++ +Q   ++ +D
Sbjct: 658 TRLESGATQMRMAAVRVESILERILILIEPIAAQRQIQLVRQIPAD 703


>gi|331213871|ref|XP_003319617.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298607|gb|EFP75198.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1640

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +  T   EA   A+  K+ F+ ++S+E+R+P+  IIG T +   +    L   Q + +
Sbjct: 1082 ALQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTQI---TLATELTRHQRENL 1138

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              + A +  LL +++D+LDL+ ++AG M +      L   + +V +S+A K   +N+++ 
Sbjct: 1139 TIVYAMANNLLLIIDDVLDLSKIEAGRMTIEKVPFALRTSIFDVLKSLAVKALTSNLQLV 1198

Query: 671  VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS------TVILKAARDNGDFIFSV 723
                  +    V D  R+ Q+ + ++ NA+ F+S G          L          F V
Sbjct: 1199 FEIAPNVPDFVVGDPFRMRQVITNLIGNAIKFTSSGHVGLSCKVATLDPVTGEHRLEFCV 1258

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G  I  D    +F+ F        R   G GLGL+I +  +NL  G + + S     
Sbjct: 1259 FDTGIGIKPDKLNLIFDTFCQADGSTTRKYGGTGLGLTISKRLVNLMEGTLWVESEYNHG 1318

Query: 782  TTINCRI 788
            +     I
Sbjct: 1319 SRFYFTI 1325


>gi|255533357|ref|YP_003093729.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255346341|gb|ACU05667.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 706

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 153/319 (47%), Gaps = 21/319 (6%)

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-------EYSII--PLPNAQTML 540
             N     ++ + + T  +DE + +     LL D +L         +II   L  +  ++
Sbjct: 249 LLNNKLVIEIISILQTFKNDEIRYIVEGRALLGDELLADIKTLDSITIINVLLLISLFVI 308

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              N+    + ER L    +   +    K+ F+ ++S+E+R+PL +++GF++ L     G
Sbjct: 309 ILYNIIKLYKNERVLIGLGKRAAQDSHSKSRFLANMSHEIRTPLNSVVGFSEQLSQ---G 365

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q   V+ I  SS +LL+LVN+ILD +  + G + L     +  D + EV  S+  
Sbjct: 366 ILSPEQKDQVDAIRNSSEMLLSLVNEILDFSKYEVGKINLENVPFLPEDEIMEVFNSMNV 425

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----AR 714
                N+ ++     + G  +  DR RL Q+   +L+NA+ F++ G  V LK       +
Sbjct: 426 LAINKNLLLENKVSLEKGICLAGDRLRLKQLIMNLLTNAIKFTASG-KVTLKVNLAVHGK 484

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +      V++ G  I  +  + +F+ F    ++ + +++G GLGL+I +  + L GG +
Sbjct: 485 KHALLKVQVEDTGIGIAPEDQEFIFDEFAQVYSSTKSRQQGTGLGLAICKKIVELQGGKI 544

Query: 773 SISSSDEGVTTINCRIPSK 791
           S++S     +  +  IP +
Sbjct: 545 SVNSVMGKGSVFSFEIPYE 563


>gi|300024973|ref|YP_003757584.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526794|gb|ADJ25263.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 651

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 148/375 (39%), Gaps = 30/375 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D  ++Y  L+ VQ        + V     DGR+  +N AF   +      L        +
Sbjct: 114 DRASQYRELLDVQR-------DFVVRRSADGRLVFANRAFCEAFGVRSEALLGSKFEPPV 166

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A      +E+  +D   A +      ++ +    + +           +    T+    
Sbjct: 167 LAEDD--CSEAVAYDCRGAQLVHTQKGQRWIAWDFQEIKGQEGSVEFQGVGRDITVERG- 223

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                   ER L +       A   K+ F+  +S+E+R+P+  I+G   L++ ++   L+
Sbjct: 224 -------VERELKDARNQAEMASRAKSRFLATMSHEIRTPMNGILGMISLMRDTQ---LD 273

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q      +  S+  LLNLV+DILD + ++AG ++L      L   + +  Q +A    
Sbjct: 274 AEQRTCARIVEDSTRALLNLVDDILDFSKIEAGKLELGSRPFSLKMCVAQAMQLLAPSAA 333

Query: 664 ENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---- 717
              +     +++      + D  R+ QI   +LSNA+ F+  G   V +  A +NG    
Sbjct: 334 AKRLSFTSTLTNDVPEWVIGDEMRVRQIVLNLLSNAIKFTETGGIGVCVSLAPENGKSGG 393

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
             +    V + G  +P +    +F  F  ++    R   G GLGL+I +      GG + 
Sbjct: 394 DCEIAIKVTDTGVGLPAEFISHMFQEFEQSSITMARHPGGTGLGLAISKRLAQAMGGDIL 453

Query: 774 ISSSDEGVTTINCRI 788
             S  +   +    +
Sbjct: 454 AESGADRGASFTAVL 468



 Score = 44.5 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 10/151 (6%)

Query: 164 AFLRILSLDGIYSE-LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
           A  R   L G  ++ L +      + ++  S ++ L D     V  R   G +++AN ++
Sbjct: 87  AIGRADDLSGKEADVLEDAQDAHWEFADRASQYRELLDVQRDFVVRRSADGRLVFANRAF 146

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-KSYKIVR 281
            +           +  E   L +++  + +             +   + G    ++    
Sbjct: 147 CEAFGVRSEALLGSKFEPPVLAEDDCSEAVAYDCRG-----AQLVHTQKGQRWIAWDFQE 201

Query: 282 VLNSFGE---AGIAIDVSKEITVNDQLTHTY 309
           +    G     G+  D++ E  V  +L    
Sbjct: 202 IKGQEGSVEFQGVGRDITVERGVERELKDAR 232


>gi|328472027|gb|EGF42904.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus 10329]
          Length = 783

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 154/377 (40%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   ++   ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEIAQPIVDTDQKVFS-------DNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S 
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 312 --PLTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 369

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  + 
Sbjct: 370 ALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEE 429

Query: 717 G--DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                I  V++ G  IPE     +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 DFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 490 ITVTSEEGFGSTFTVSI 506



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 73/201 (36%), Gaps = 17/201 (8%)

Query: 121 FHHYIKLSKATEKL-----RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +L+K   KL     R +  +F L  +      ++IE R+    A  R  ++  + 
Sbjct: 81  EESRQRLTKLVSKLKDMRSRDQELNFQLQ-QNIEKLNLEIEERIKAEEA--REEAMQDLE 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT---ETEGIV 232
           +E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ T   E + + 
Sbjct: 138 NEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVG 197

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSF 286
                  S+++ +  +       S  +    E       G    +++ +V          
Sbjct: 198 LSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL 257

Query: 287 GEAGIAIDVSKEITVNDQLTH 307
           G  G   D+++     + L  
Sbjct: 258 GLVGFGRDITERKRHEESLEK 278



 Score = 37.6 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 71/252 (28%), Gaps = 37/252 (14%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           ++ + ++       +      I   + +      NR+  EL       L      D   +
Sbjct: 147 QLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSK 206

Query: 358 FLRSANKLPEQLN--------WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            +       +Q          ++ W E         E  K  ++  +G+ L         
Sbjct: 207 EIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL--------- 257

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-------GVAVFGP---------- 452
            G +    ++T +   E       + +   I  +S        G+               
Sbjct: 258 -GLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSPLTEE 316

Query: 453 -DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
               ++  N +  +L     + +      R          N  D      +I ++   E+
Sbjct: 317 QRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESI-SALMAEQ 375

Query: 512 KSLQGTLELLSD 523
           K L+  LE LSD
Sbjct: 376 KGLRFDLERLSD 387


>gi|288940451|ref|YP_003442691.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895823|gb|ADC61659.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1037

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 175/438 (39%), Gaps = 22/438 (5%)

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           +  +L  + ++  W+E +    +     +       G  + +              E L 
Sbjct: 467 ADGRLSPRRSFDAWREIVERHGRRWRPEELESARKLGALIDIEWRKMAEEALRASEERL- 525

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPGTH 479
            +   E       +     +DH+ + + ++    R    N  + +   +     L     
Sbjct: 526 -RQAAENALRLSKESFRLAVDHMPDALVIYDQTRRYSFLNAVSLKRAGRPMSAYLGRRDE 584

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNA-- 536
             +    C  Y           +++        S +  LEL +    L  + +P+     
Sbjct: 585 EIHPPEVCDVYLPHLCRAYANRSVV--------SFECALELATSHYDLVVTYVPMLEHGE 636

Query: 537 --QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q    + ++T+  R E  L E+   LR+AD  K+ F+  +++ELR+PL  I     LL
Sbjct: 637 VYQVFGFYYDITERKRNEAKLAEQARQLREADWRKDEFLAMLAHELRNPLAPISNALQLL 696

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K S+      +++  +  I   +  L  LV+D+LD++ +  G+++L    + + ++++  
Sbjct: 697 KQSRFAG---QEAWCLAVIDRQAAHLQRLVDDLLDVSRITRGVIELRPEPLDVTEIIDRA 753

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            ++    +      +++ +  +    + D  RL Q+ S +L+NA  F+ +G  + +   R
Sbjct: 754 VETSRALIEARRHELRIRTPTEPIRLMGDLVRLTQVVSNLLANAAKFTDEGGCIAIDVER 813

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
           +    +  V++NG  I  +    +F+ F            G+G+GLS+V+  + +HGG V
Sbjct: 814 EATTVLIRVRDNGLGIEPERLPQLFDLFYQVDRGIARTEGGLGIGLSLVKRLVEMHGGSV 873

Query: 773 SISSSD-EGVTTINCRIP 789
              S        +  R+P
Sbjct: 874 EALSPGLGQGAELRVRLP 891



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 125/411 (30%), Gaps = 42/411 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD-ILWA-NISYKKNTETEG-IVFQKA 236
           E T +  + +  +++F +       L+W R +    + W  N     +   +G +  +++
Sbjct: 417 EQTAELAETAAGVALFPLDAGQSIKLIWFRGEQLRQVTWGGNPDKSMSVAADGRLSPRRS 476

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
               R++ +   ++         +     +         + + +R               
Sbjct: 477 FDAWREIVERHGRRWRPEELESARKLGALID--IEWRKMAEEALRASEERLRQA------ 528

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN---- 352
            E  +          + ++  A+ I+DQ R   F N   ++     ++            
Sbjct: 529 AENALRLSKESFRLAVDHMPDALVIYDQTRRYSFLNAVSLKRAGRPMSAYLGRRDEEIHP 588

Query: 353 ----DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
               D  L  L  A      ++++   E   S Y    T+     L +G+   V      
Sbjct: 589 PEVCDVYLPHLCRAYANRSVVSFECALELATSHYDLVVTY--VPMLEHGEVYQVFG---- 642

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
                  + ++T +   E K     +   E      E +A+   + R    NP       
Sbjct: 643 ------FYYDITERKRNEAKLAEQARQLREADWRKDEFLAMLAHELR----NPLAPI--- 689

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVL 526
           +   +L   +      A C    +          ++    D  +  +G +EL  +   V 
Sbjct: 690 SNALQLLKQSRFAGQEAWCLAVIDRQAAH--LQRLVDDLLDVSRITRGVIELRPEPLDVT 747

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           E     +  ++ ++        +R           L +  ++ ++ + + +
Sbjct: 748 EIIDRAVETSRALIEARRHELRIRTPTEPIRLMGDLVRLTQVVSNLLANAA 798


>gi|222151384|ref|YP_002560540.1| hypothetical protein MCCL_1137 [Macrococcus caseolyticus JCSC5402]
 gi|222120509|dbj|BAH17844.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 585

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 159/393 (40%), Gaps = 37/393 (9%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVFGPDGRIKLS 459
           + V S    G + + F  +   + L     +  +   +  I+ + +GV  F      +L 
Sbjct: 218 IKVQSRDEIGELALAFNKMEEDIILNMNRISSERNLRDRLINAMEDGVLSFNMHLEKQLQ 277

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           NP  +               I  ++ T ++     D   ++  I T              
Sbjct: 278 NPMAKKFLDDI-----NQQQIEALSDTVNQVMQSEDT--IYNEITT-------------- 316

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             +D      + P+ N +       V        A+       +K D++K  F+ +VS+E
Sbjct: 317 --NDKHYVLIVSPVDNPEIKQGNGAV--------AIIRDMTEEKKIDQMKQMFIANVSHE 366

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+P+  + G+T+ +    + S  S   +++  I   S  L  LVN++L++A +DAG   
Sbjct: 367 LRTPIQMLQGYTEAILDGIV-SEKSDVDEFLNIILDESKRLNRLVNELLNVARIDAGEQV 425

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           LN     + +L+     +      ++   ++        +++ D  +++Q+ + I+ NA+
Sbjct: 426 LNLEATDIEELIERTIMNFKHVAEKHETELQTHYSHHSKAWL-DYDKMIQVITNIIDNAL 484

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            ++  G  + +    D+ + I  + + G  I  +   ++F RF        R   G GLG
Sbjct: 485 RYTVAGDVISIHTDEDDENLIIRISDTGVGIAPEHIDNIFERFYKVDQARTRGKHGTGLG 544

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L IV+S +  H G +++ S+    TT    IP 
Sbjct: 545 LFIVKSIVEGHHGSINVDSTVGKGTTFVISIPK 577


>gi|90418498|ref|ZP_01226410.1| putative two-component signal transduction histidine kinase
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90338170|gb|EAS51821.1| putative two-component signal transduction histidine kinase
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 698

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 159/371 (42%), Gaps = 21/371 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-- 483
             + +    +    +  L + + V   DGR   +NPA  ++ +        G    +   
Sbjct: 86  RRELSATNAIYRAMVRELPDCLNVKDVDGRFIAANPATAAMMRVRGAADLTGKTDFDFYP 145

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               +R+  +        A++ S    R          S+  L     P  +    +  +
Sbjct: 146 PELATRFRADE------TAMLESGKAIRIDQMTVFPDDSEGWLNTLKAPFRDHTGRIVGI 199

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +    E+          +   +KN F+  +S+ELR+PLT+I G   L+     G L 
Sbjct: 200 ITYNRDVTEQK---------RNAAVKNEFIATISHELRTPLTSIRGSLGLITAGVTGELP 250

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K +  VE    +S  L+ L+NDILDL  +++G M  +     L  LL++   S ++ M 
Sbjct: 251 PKAAHMVEIAHNNSERLVLLINDILDLEKLESGKMPFDLQHTRLRPLLDQAISSSSSYMP 310

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FS 722
           E  + I+++ +        D  RL Q+F+ ILSNA+ FS  G TV +  AR   D++  S
Sbjct: 311 ERRVTIRLVDEAPDIEAKTDPNRLHQVFANILSNAIKFSPTGGTVTVTIARLGDDWVRMS 370

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IPE   K +F +F         Q+ G GLGLSI ++ +   GG +    + + 
Sbjct: 371 VSDEGQGIPESFRKRIFGKFEQADATDNRQKGGTGLGLSIAKTIVEKLGGRIGFD-TGDT 429

Query: 781 VTTINCRIPSK 791
            TT +  +P +
Sbjct: 430 GTTFHVDLPEQ 440


>gi|219670060|ref|YP_002460495.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540320|gb|ACL22059.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
          Length = 468

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 147/363 (40%), Gaps = 25/363 (6%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     +  + EGV      GRI L N A   L+             R   A   +
Sbjct: 112 RQEAQKIQAILAGMQEGVISLDHVGRIVLLNRAAERLFG------------REQEAVRDK 159

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           +++E  G++    ++T   ++  S Q  L   S  ++   + P+   +       +    
Sbjct: 160 HFSELCGFEELGDLVTQALEKGSSGQIELATNSKLMIRAQVSPISGERARSQGAVIVCYD 219

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E         +R+ + ++  FV +VS+ELR+PLT+I GF + L       +   + ++
Sbjct: 220 ITE---------IRRLELLRTEFVGNVSHELRTPLTSIKGFVETLLDGA-SEVPHLRERF 269

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  L  LV+++L L+ ++            + +   +++  I        + +
Sbjct: 270 LNIIHKETLRLQRLVDELLTLSRIENQRQDAGQGMSKVQEAYEKIRPVIEPYAEAKKVEL 329

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++     L         L Q+   ++ NA+ ++ KG  V L A  D+G  +    + G  
Sbjct: 330 EIKIPKDLPEVAMGIDLLSQVLLNLMENAVKYTVKG-KVWLHAFHDDGKILLEFGDTGCG 388

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    +F RF         ++ G GLGLSIV+  +    G ++++S     +   C 
Sbjct: 389 IPKEDLPRIFERFYRVDKARSREQGGTGLGLSIVKHIVEGVKGKITVASEPGSGSVFICE 448

Query: 788 IPS 790
           +P+
Sbjct: 449 LPT 451


>gi|321225247|gb|EFX50306.1| Aerobic respiration control sensor protein arcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
          Length = 608

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------ 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|284053245|ref|ZP_06383455.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 252

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 9/230 (3%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTILLNLV 624
            K+ F+  +S+ELR+PL  I+GFT L++     S N   S   +++E I  S   LL L+
Sbjct: 1   AKSEFLARMSHELRTPLNAILGFTQLMERELYHSPNIPLSDHKEHLEIIGRSGEHLLELI 60

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           ND+L+++ ++AG + LN +   L  LLN +++ +        + +    D  + +   AD
Sbjct: 61  NDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDHIPTYIYAD 120

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTV-ILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVF 739
            Q+L Q  + +L NA+ F+ +G  +  +K  +   D G   F V++ G  I       +F
Sbjct: 121 EQKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLF 180

Query: 740 NRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F      R  ++G GLGLSI + FI L GG + +SS     T     I
Sbjct: 181 EPFSQTETGRNSQQGTGLGLSITQKFIGLMGGEIQVSSERGKGTIFRFDI 230


>gi|332142260|ref|YP_004427998.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552282|gb|AEA99000.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 1121

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + ++  +S+ELR+PL  ++G++ LL   K  SL+ KQ   +  +  +   L NL+  +L+
Sbjct: 673 SRYLAGLSHELRTPLNVMLGYSQLL--GKDVSLSEKQRDTMGIMRRNGEHLANLIEGLLE 730

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
           ++ ++AG + L+     +  +L ++      +     +        KL    V D+QRL 
Sbjct: 731 ISKIEAGRLTLHRDEFNIRAILKQLIDMFELQASNKGLNFHTNISTKLPDVVVGDKQRLR 790

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NA 746
           QI   ++SNA+ ++  G  V       N   IF V + GS I E   +++F  F    N 
Sbjct: 791 QILINLISNAIKYTEAGH-VKFDVQYRNEVAIFVVVDTGSGISEAHKETIFQPFEQIRNT 849

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           H     G GLGL+I  S   L GG +S  S     +T   R+
Sbjct: 850 HTQAIGGTGLGLTISRSLTELMGGELSFKSLLGKGSTFTLRL 891


>gi|195940455|ref|ZP_03085837.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4024]
          Length = 777

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 153/380 (40%), Gaps = 24/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K   + ++Q           +D   + V     D      N A   L    E 
Sbjct: 134 EQLKIEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 193

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 194 QLIHLKPQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 248

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 249 YYDRVGKRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++   L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 307 ILLDTE---LTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLA 363

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +   +     L    V D  RL QI   ++SNA+ F+ KG  V ++
Sbjct: 364 DLENLSGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQKG-QVAVR 422

Query: 712 AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD   F V+++G  IP++    +F  +         +   G G+GL++ +     
Sbjct: 423 IRYDEGDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKS 482

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG ++++S     +T    
Sbjct: 483 MGGDITVASQPGKGSTFTLT 502



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  +L+ +  E+ E  +   +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQTTLEQLKIEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q    + + ++ EE   +++ +   EK F   VS           G    ++I
Sbjct: 189 GKS--EKQLIHLKPQDVYSEEAAAKVMETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|193076366|gb|ABO11027.2| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
           17978]
          Length = 935

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  
Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRK 334

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 335 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYAD 394

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    + D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 395 NIPQQVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIG 453

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGS 513

Query: 783 TINCR 787
           T    
Sbjct: 514 TFWFT 518


>gi|182414748|ref|YP_001819814.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841962|gb|ACB76214.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 806

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 146/373 (39%), Gaps = 18/373 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   E +   L     + +D++++G       GR+   N     LW      L       
Sbjct: 297 RKAAEQQREELNARTNQILDNINDGFFAIDGAGRLTHVNRQAEELWGRGRADL------- 349

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I              DL  A   +  D +               + S+ P         
Sbjct: 350 -IGQALPEDSLGPPALDL-GAHAEALRDRKPRHYEVFAEPLGRWFDVSLYPEETGGLACF 407

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           F ++T     E AL +  +   +A+  K+ F+  +S+ELR+PL  +     L        
Sbjct: 408 FRDITHRKSVEAALVQAKDEAERANRAKSDFLATLSHELRTPLAPV--MLTLPYVETHPE 465

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L ++   +VE I  +  + + L++D+LDL  V+ G ++L  + + L+ +L+ V +     
Sbjct: 466 LPAELRSHVESIRRNVELEIRLISDLLDLTRVERGKLQLEKTEVDLHGVLHSVVEICR-- 523

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
               ++ I +           D  RL Q+F  +L+NA  F+ +   +++   +  G  I 
Sbjct: 524 -EAESVPITLELAATRHYVHGDPARLHQVFWNLLTNAQKFTDRSGRIMVLTRQAEGHAIS 582

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  ++   +F  F     +   Q+ G+GLGL+I    + +H G ++  S  
Sbjct: 583 VSVTDTGVGLTPELRSRLFVAFEQGESKSARQKGGLGLGLAICRKILEMHAGTITAWSEG 642

Query: 779 -EGVTTINCRIPS 790
                T    +P+
Sbjct: 643 TGRGATFTVVLPT 655



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 77/275 (28%), Gaps = 17/275 (6%)

Query: 297 KEITVNDQLT-HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                 ++L   T +IL N+       D    L   NR   ELW    A L        +
Sbjct: 299 AAEQQREELNARTNQILDNINDGFFAIDGAGRLTHVNRQAEELWGRGRADL--------I 350

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            + L   +  P  L+     E +         H + +  P G+   V +     GG    
Sbjct: 351 GQALPEDSLGPPALDLGAHAEALRD---RKPRHYEVFAEPLGRWFDVSLYPEETGGLACF 407

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-----IKLSNPAFRSLWKTE 470
           F ++T +  +E                 S+ +A    + R     + L+ P   +  +  
Sbjct: 408 FRDITHRKSVEAALVQAKDEAERANRAKSDFLATLSHELRTPLAPVMLTLPYVETHPELP 467

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
               S    IR       R  ++              +     L G L  + +   E   
Sbjct: 468 AELRSHVESIRRNVELEIRLISDLLDLTRVERGKLQLEKTEVDLHGVLHSVVEICREAES 527

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           +P+             D  R  +         +K 
Sbjct: 528 VPITLELAATRHYVHGDPARLHQVFWNLLTNAQKF 562


>gi|163743847|ref|ZP_02151219.1| sensory box sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161382885|gb|EDQ07282.1| sensory box sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 842

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 158/392 (40%), Gaps = 27/392 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +      E +   L +     ++    G+     +    + +   R L+           
Sbjct: 297 IQTLKRRERELEALSRRLEMAVETSKIGIWEIEDNSDSAIWDHRMRELYGDPVGSSDVPL 356

Query: 479 HI-RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--------LSDSVLEYS 529
            + R+      R    +   +    +     D R  L+               DS     
Sbjct: 357 TVWRSFLHPNDRDRVINGFQEALRHVRNHSIDFRVRLENGTHKNIRAMGCSFRDSRGRNR 416

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRS 582
           +I +    T    +N  +  R  + LT +N  L        KAD+ K  F+ ++S+E+R+
Sbjct: 417 MIGVEWDVTRDVDLNN-ELKRTNQQLTHRNAQLTYAKQAAEKADQAKTEFLANMSHEIRT 475

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  IIG +D+L  S    L+++Q Q V+ I  SS  LL ++NDILDL+ ++AG M+++ 
Sbjct: 476 PMNGIIGMSDILAES---PLSAEQEQCVDTIRDSSVALLKIINDILDLSRLEAGKMEIST 532

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
               L   ++     +  K+ E  +        +L      D  RL QI   +LSNA+ F
Sbjct: 533 VDFNLRKCVDGAVDVLRPKLREKGLTFTQTFARELPEQVHGDDGRLRQILVNLLSNAVKF 592

Query: 702 SSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           +  GS V L  +RD  D       V + G  I ED  + VF RF        R   G GL
Sbjct: 593 TQYGS-VSLHVSRDVKDPYHLFIDVVDTGIGISEDQARHVFERFSQADAATTRHYGGTGL 651

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I        GG +S++S++   +     I
Sbjct: 652 GLTISNILAQRMGGGISLNSNEGQGSCFRLEI 683


>gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 913

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     LN+ QS Y++ 
Sbjct: 273 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKT----PLNATQSDYLQT 328

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++ND+LD + ++AG + L +   +L + ++EV   +A   HE  I + + 
Sbjct: 329 IERSANNLLTIINDVLDFSKLEAGKLVLEHIPFLLRETIDEVTVLLAPSAHEKGIELTLN 388

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VIL---KAARDNGDFIFSVKNNG 727
               +    + D  R+ Q+ + +L NA+ F+ KG+  + +    A     +    V + G
Sbjct: 389 IRNDVPEHVIGDPMRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVLVHDTG 448

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F        RR  G GLGL I +  +N  GG +S  S     +T  
Sbjct: 449 IGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGSTFW 508

Query: 786 CRI 788
             I
Sbjct: 509 FHI 511


>gi|253566766|ref|ZP_04844218.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265763189|ref|ZP_06091757.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|251944329|gb|EES84818.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263255797|gb|EEZ27143.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 639

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T     D  R++ AL E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L + 
Sbjct: 390 YLRTKRLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG 449

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             GS    Q  Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S
Sbjct: 450 --GSSEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSS 507

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARD 715
           +     E+  R    +         D QRL Q+   +L+NA  F+ K  T+ L  +  ++
Sbjct: 508 VEMSRRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKE 566

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +F+V + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I 
Sbjct: 567 KNRVLFAVADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWID 624

Query: 776 SSDEGVTTINCRIPS 790
              EG        P 
Sbjct: 625 PDYEGGARFVVSHPL 639


>gi|182435566|ref|YP_001823285.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
 gi|178464082|dbj|BAG18602.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1840

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 25/315 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +     D  + L+   + L  S  E      L   Q     V  T+   A + L E+ 
Sbjct: 1291 QELTEQLRDRSQELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERA 1350

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ E I  + + 
Sbjct: 1351 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSD 1410

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  
Sbjct: 1411 LLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPA 1470

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KAARDNGD 718
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         + D
Sbjct: 1471 TLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADAD 1530

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I FSV + G  I       +F  F         +  G GLGLSI      L GG +  +
Sbjct: 1531 LIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAA 1590

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1591 SEPGRGSTFTLYLPL 1605


>gi|170743275|ref|YP_001771930.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168197549|gb|ACA19496.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1857

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 15/261 (5%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              +  +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ 
Sbjct: 1135 NQEIEQARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLSENPDGNLSE 1194

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +Q ++   I  + T LLNL++DILDL+ +++G + +    I   +LL    +    +   
Sbjct: 1195 RQVEFARTIHGAGTDLLNLISDILDLSKIESGTVSVEAEEISFANLLATTARPFRHEAEN 1254

Query: 665  NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------ 718
              +   V    +LG+ V D +RL Q+   +LSNA  F+ +G   +  A    G       
Sbjct: 1255 RRLSFDVEMAPELGTLVTDSKRLQQVLKNLLSNAFKFTEQGGVRLRVAPAAGGWSADHPV 1314

Query: 719  -------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
                     F V + G  IP +  K +F  F         +  G GLGL+I     NL G
Sbjct: 1315 LKNAPAVVAFEVSDTGIGIPPEKQKIIFEAFQQADAGTSRKYGGTGLGLAISRELANLLG 1374

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G + + S+    +T    +P 
Sbjct: 1375 GEIQLRSASGVGSTFTLYLPL 1395


>gi|158334667|ref|YP_001515839.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158304908|gb|ABW26525.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 929

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 26/267 (9%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L    E    A+  K++F+ ++S+ELR+PL  I+GF+ LL   K  +L  KQ
Sbjct: 399 QHAELMHQLQRSKEKAEAANRAKSAFLANMSHELRTPLNAILGFSQLLNRDK--NLTPKQ 456

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  I+ S + LLNL+ND+L+++ ++AG + LN+    L  LL+ +++    K+    
Sbjct: 457 KQTLTSINRSGSHLLNLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKG 516

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAAR 714
           +++ V     L  ++  D  RL Q+   +L+NA+ F+ +GS  +           L    
Sbjct: 517 LKLLVDKALDLPPYIRTDESRLRQVLINVLTNALKFTEQGSVALKVYTQPLRSPNLVPTH 576

Query: 715 DNGD-----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVE 762
           D+G+               V++ G  I      ++F  F   +  R    G GLGL+I +
Sbjct: 577 DDGNAVTEEHQPNIYLCIDVEDTGVGISASEMGNLFETFTQASAGRNSTEGAGLGLAICQ 636

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             I L GG++ I S +   TT+  ++P
Sbjct: 637 HCIELMGGNILIDSKEGQGTTVQIKVP 663


>gi|60681363|ref|YP_211507.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60492797|emb|CAH07571.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 637

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T     D  R++ AL E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L + 
Sbjct: 388 YLRTKRLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG 447

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             GS    Q  Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S
Sbjct: 448 --GSSEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSS 505

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARD 715
           +     E+  R    +         D QRL Q+   +L+NA  F+ K  T+ L  +  ++
Sbjct: 506 VEMSRRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKE 564

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +F+V + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I 
Sbjct: 565 KNRVLFAVADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWID 622

Query: 776 SSDEGVTTINCRIPS 790
              EG        P 
Sbjct: 623 PDYEGGARFVVSHPL 637


>gi|300814230|ref|ZP_07094506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511654|gb|EFK38878.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 605

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/401 (23%), Positives = 169/401 (42%), Gaps = 43/401 (10%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKL 458
            V V SN   G +  MF  LT ++      N L + +  TI ++++EGV       ++  
Sbjct: 230 RVDVKSNDEIGQLGNMFNYLTDELKNTIAKNDLERSKLNTIFNYMAEGVIAVDRTNKLIH 289

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +N   ++L   +++R++   +++ I      Y                  D  KSLQG +
Sbjct: 290 ANSIAKNLLSLDDSRINTQINLKKIGLKDINY------------------DIEKSLQGEV 331

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQH 575
                      +  + N    L +      ++    L      + K      ++  FV +
Sbjct: 332 -----------LAEIKNHFYKLKYAPYKSDLKENEGLIIVLSDINKEHRLDILRKEFVAN 380

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+EL++P+T I  +T+ L     G      + +++ I   +  +  LV+D+L L+ +D 
Sbjct: 381 VSHELKTPITTIGSYTETLLNGVAG---EDINHFLKVIERENARMARLVSDLLVLSNIDY 437

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
               LN  T    + + E  +S +  + + +  I +    K+ +  +DR    QI   I+
Sbjct: 438 KKEHLNKETFDCYEFIEEAVESQSLLISQKSHNISIDVPIKIRTIYSDRHGASQILINII 497

Query: 696 SNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
           SNA+ ++ +G  +++ A       N     SVK+NG  IP++    +F RF         
Sbjct: 498 SNALKYTKEGGKILIAAENYKNGKNNFVKISVKDNGIGIPKEDLPMIFERFYRVEKGRSR 557

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  G GLGLSI    I   GG + ISS+    T +    P+
Sbjct: 558 EMGGTGLGLSIANEMIKSLGGSIKISSTLNVGTDVELFFPA 598


>gi|262275800|ref|ZP_06053609.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219608|gb|EEY70924.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1085

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 34/317 (10%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           IA       N +DG      +     DE   +   L    D ++                
Sbjct: 347 IARLAEAMRNLADGNPEIPILYKDRTDEVGQISHALSSFRDHIIS--------------- 391

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                  +A   L  + E    A + K  F+  +S+E+R+P+  +IG  D+L  SK   L
Sbjct: 392 -----RNQAREQLLYQKELAESASKAKAQFLAAMSHEIRTPMNGVIGMIDILLRSK---L 443

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q      +  S+  LL+++NDILD + ++AG M+++  T+ L  +  +V  ++AT+ 
Sbjct: 444 DMSQMSIANTVRESALSLLSIINDILDFSRIEAGKMRIDNVTLSLRQIAEQVMDNLATEA 503

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF----SSKGST---VILKAAR 714
            E N+ + +     +  S   D  R+ QI   I+ N + F    S +G     +    A+
Sbjct: 504 VEKNVSLTLFVSPDVPSSLCGDPTRIKQILFNIIGNGIKFSGGQSHRGEVQVWITADIAK 563

Query: 715 DNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           D        +++NG  I +D  +S+F  F+   +   RR  G GLGL+I  +  +L GG 
Sbjct: 564 DGNAKISIEIRDNGIGISQDKLESIFRPFMQAEYSTTRRYGGSGLGLAISRNIASLMGGT 623

Query: 772 VSISSSDEGVTTINCRI 788
           ++ +S +   +T    +
Sbjct: 624 ITANSEEGIGSTFTVNL 640


>gi|229137795|ref|ZP_04266397.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
 gi|228645652|gb|EEL01884.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
          Length = 883

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 406 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 464

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 465 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 524

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 525 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMHQNFLHIAAQKNVEFT 584

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG-------STVILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KG       S      + D       
Sbjct: 585 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSVETSNLSHDMQSISKD 644

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 645 WISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 704

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 705 SHVGEGSTFTVYIP 718


>gi|89889870|ref|ZP_01201381.1| putative sensory transduction histidine kinase, PAS fold
           [Flavobacteria bacterium BBFL7]
 gi|89518143|gb|EAS20799.1| putative sensory transduction histidine kinase, PAS fold
           [Flavobacteria bacterium BBFL7]
          Length = 659

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/520 (20%), Positives = 207/520 (39%), Gaps = 39/520 (7%)

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              GI  D++K      +L  +   L     NL  A+ + D+N  +   N  F E +EI 
Sbjct: 159 AAQGIVRDITKSDEDEKKLIESENRLSTLILNLENAVLLEDENGKIVLTNHKFCEYFEIP 218

Query: 343 L-AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           L           ++ +  +     P+    +   + I S+ K      D   + NG+ L 
Sbjct: 219 LKPEEIVGNDYHKISDNYKFLFDDPDYFIQRV--DEILSLKKMV--IGDELIMNNGRILE 274

Query: 402 ----VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
                I+ S+   G +W + ++T++           +     I ++  G+     + +I 
Sbjct: 275 RDFIPIIESDNYKGHLWSYRDVTLKRSYSKSLEAQKQKYSSIIANMHLGLVEVDTEEKII 334

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF-AAIITSFDDERKSLQG 516
           + N +F  +    E  +        +    S  + +SD   +F          E  S + 
Sbjct: 335 MVNQSFTQMSGYTEEEV--------VGRKASSLFLDSDDVHIFKEQTRKRLRGESSSYEV 386

Query: 517 TLELLSDSVLEYSIIPLPN-------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            + + S+    + I   PN         ++   +++TD    E         L K+++  
Sbjct: 387 VVNIKSNERRHWLISGAPNYDLEGNVTGSIGIHLDITDLKNLEIQKELLLAQLAKSNDEL 446

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + +   VS++L+SPL +I    + LK   L   +    + +  I  +   +  L+ DILD
Sbjct: 447 HEYAHIVSHDLKSPLRSIDALVNWLKADNLDKFDEISLKNLSLIEETLEKMEQLIGDILD 506

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
            +++++   +  ++ I  N+L+ ++ + I    H     I++   G L     DR ++ Q
Sbjct: 507 YSSLNSSNEE--FTEIDCNELVVDLIKVIYVPNH-----IEINLKGILPKINGDRTKVNQ 559

Query: 690 IFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           +F  +LSNA+ F   +   + +     +  + F +K+NG  I       +F  F   A  
Sbjct: 560 LFQNLLSNAVKFIDKEKGIIEVSCIELDNHYQFQIKDNGIGIDPAFHDKIFKIFH--ALN 617

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +   G+GLSIV+  ++LH G + + S     TT    +
Sbjct: 618 KNKDSTGIGLSIVKKIVDLHQGKIWLESKVGEGTTFFFTL 657


>gi|332525071|ref|ZP_08401250.1| putative hybrid sensor and regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332108359|gb|EGJ09583.1| putative hybrid sensor and regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 820

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 141/751 (18%), Positives = 264/751 (35%), Gaps = 75/751 (9%)

Query: 63  SEICDQLSKYHSLLTENNCLTIVWDGKDETP----EIIGQLHQRIDIPQTDTDLLSFENW 118
           S++C +L   H L+             D +P    E  G+L   +   Q D + L     
Sbjct: 110 SDVCWELDAEHRLVAAYRQR------GDTSPLAGTEARGRLPWELPQFQCDDETLDLLRA 163

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
                     +    L  +G+   L+         +      G  A        G+  ++
Sbjct: 164 DLDARAPFRDRLVHWLGADGRPLSLLVSG------EPRRDERGGFAGFW-----GVARDV 212

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY---------KKNTETE 229
           +      + L+   +  + LF  +   +    + G +L AN +          +     E
Sbjct: 213 SAEMDARRALAAAETRCEELFARIPTPL-VLHRRGRVLDANPAALVLLGCDMLETLVGHE 271

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFG 287
            +   +A     +  +   +                +     G   S +   VR+    G
Sbjct: 272 LLGAYEAGESRERERRRFDELEGAPVGTALTIADFRLQPR-GGERLSVRAISVRIEAEGG 330

Query: 288 EAGIAI--DVSKEITVNDQLTHTYEILHNL----TVAIAIFD-QNRYLQFHNRSFVELWE 340
            A ++I  D ++ +     L  +  +L +L       I + D         N +FV    
Sbjct: 331 PATLSIYADDTERLAAEQTLRRSEAVLAHLFASSPELITLTDLGTGRFTMANDTFVRATG 390

Query: 341 IDLAFLATNPSND-ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
              A +    + +  L        +  EQ+       ++ + +++           +G+ 
Sbjct: 391 FAAADVVGRTAIELGLWLHDEQRRQFAEQMQRSGTATDLPADFRAR----------DGRV 440

Query: 400 LHVIV--TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           L V+V  T     G  ++  N        T+     + +   +D+ S G+AV    GR  
Sbjct: 441 LSVLVSGTRFSVEGHDYLVVNARDV----TETERSRREREAILDNASIGIAVT-RGGRFM 495

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE------SDGWDLFAAIITSFDDER 511
           ++N  F  ++         G  +   AA      +E           L        +   
Sbjct: 496 MANRRFEQMFGWPP-----GGLVERPAAAVWPGSDEIVEIARGTLPALARGEPVEIEGHA 550

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +   G+  L    V     +       +    +VT+    ER L    +A   A   K++
Sbjct: 551 QRRDGSTFLARLVVKAVDPVDPARGGAVWIVEDVTERREFERRLAAARDAAEAASRAKSA 610

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ + ++ELR+PL  +I    L + ++L      + QY+++I+ S+  L  +V+DILD++
Sbjct: 611 FLANTNHELRNPLNGMINLAKLARDAQLD--EQVRQQYLDHIAESAQSLAAIVSDILDVS 668

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQI 690
            ++AG M+L      L +LL+  ++  AT     ++ +      G  G+ V D  R+ QI
Sbjct: 669 KIEAGRMELASEPFDLVELLHGAQRVYATMAAARSLTLDFDIGPGLDGTVVGDPLRVRQI 728

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            +  L NA+ F++ G   ++      G     V + G  I       +F  F        
Sbjct: 729 VTNFLGNALKFTAAGGVRVVVRRVPAGRVRLEVHDTGPGIDPATQARLFRPFTQADESTT 788

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           RR  G GLGLSI      L GG V + S   
Sbjct: 789 RRFGGTGLGLSICRELATLMGGEVGVDSQPG 819


>gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 1153

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 6/243 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQY 609
           A +   ++ EAL   D+ K +F  ++S+E R+PLT ++G  + LL+ + L     KQ   
Sbjct: 325 AYQEEQKRAEALAAIDQAKTAFFNNISHEFRTPLTLMLGPLEELLQDTALQESTYKQP-- 382

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E    ++  LL LVN++LD + ++AG +K ++  + L  L  ++  S  + +    + +
Sbjct: 383 IEATHRNALRLLKLVNNLLDFSRIEAGRVKASFRPVDLVGLTVDLASSFRSLIERAGLEL 442

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V  +       AD +   ++   +LSNA  ++ KG  + ++   +    +  V + G  
Sbjct: 443 SVDCEPMPAVVYADAEMWEKVVLNLLSNAFKYTLKGH-IGVQLTAEADGVVLRVSDTGVG 501

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +F RF   A+       G G+GLS+V   + LHGG ++++S +   +T   R
Sbjct: 502 IPAAELPHMFERFHRVANAGGRTYEGSGIGLSLVHELVRLHGGTITVTSREGEGSTFTVR 561

Query: 788 IPS 790
           +P 
Sbjct: 562 LPL 564



 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 153/428 (35%), Gaps = 60/428 (14%)

Query: 415  MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENR 473
            +   +  Q++L              ++     + +  G +  I L N A   L +  E  
Sbjct: 729  LLTKIRAQINLNQTRRQGETRLRSLVEQAPVAMLLMKGSNLVIDLVNQAMLELIQ-REKD 787

Query: 474  LSPGTHIRNIAATCSRYY-------------------------NESDGWDLFAAIITSFD 508
            +     +  +     + +                         N       F  ++T + 
Sbjct: 788  ILGKPLVDAMPELNGQGFIDRCLTVYQTGVPDQGWSIAIPVNRNNRVETGYFNILLTPYY 847

Query: 509  DERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRK 564
             E  ++ G LE+ ++   ++E +     +           D    +R   L      L++
Sbjct: 848  -EGNAITGVLEVCTEITELVEVNKALATSEDRYRQLSTALDEQVQQRTAELQASIHDLQR 906

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +++    F    S++L+ PL  I  F DLLK     +L      Y++ +  ++  +  L+
Sbjct: 907  SNDNLQQFAYVASHDLQEPLRKIQSFGDLLKNQYADNLGEGI-DYLKRMQTAANRMSTLI 965

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
             D+L  + +          T+ L + L+ V   +   + E    +++     L + + DR
Sbjct: 966  RDLLSFSRITTRQEV--TETVSLAETLSMVVLDLEVMIQETGAEMRIH---PLPTVLGDR 1020

Query: 685  QRLLQIFSKILSNAMDF---SSKGST-----------VILK--------AARDNGDFIFS 722
             +L+Q+F  +LSNA+ F   SS G +           V +                +   
Sbjct: 1021 SQLIQLFQNLLSNALKFRRKSSAGVSVPPVVEVSAQLVNVSELPSTVRPTRSVAAYYRID 1080

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            V +NG    E     +F  F     + + +G G+GL+I E  +  HGG ++  S      
Sbjct: 1081 VTDNGIGFNEKYLDRIFQVFQRLHGKSEFQGTGIGLAICEKVVANHGGVITAQSQPGEGA 1140

Query: 783  TINCRIPS 790
            T +  +P+
Sbjct: 1141 TFSVYLPA 1148


>gi|167644961|ref|YP_001682624.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347391|gb|ABZ70126.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 832

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 144/376 (38%), Gaps = 24/376 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E ++  L        ++  + +      G ++ ++P   ++       +  G     I
Sbjct: 315 RSEARFRQLA-------ENAQDMIIQSNMRGIVQYASPGCLAMTGFTPEEVV-GREGMQI 366

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM---- 539
                R    +      A +    D+    ++         ++     P  +   +    
Sbjct: 367 VYEEDREAVRAIVIAQLAHLAADIDNGPNRVEYRAARKDGRIIWLESRPTLSRDPLTGKV 426

Query: 540 ----LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                   ++T+    ER L E       A  +K  F+ ++S+ELR+PLT+++GF  L+ 
Sbjct: 427 TGITDIVRDITEHKAMERQLREARNEAEAAAAVKGEFLANMSHELRTPLTSVLGFARLVD 486

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L+    +++  + +    LL  +NDILD + ++AG ++L         L++E  
Sbjct: 487 NEP--DLSPDARRFISRVLSGGKALLTTINDILDFSKLEAGQLELKLEPTAPAQLIDEAM 544

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              + +     + ++ +    L +  + D  RL Q+   ++ NA+ F+  G T+ + AA 
Sbjct: 545 DLFSLETEARGVALRAVGLEDLPADLLIDGGRLRQVLLNLIGNAVKFTEVG-TITVSAAY 603

Query: 715 D--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
           +        SV + G  I       +F RF         +  G GLGL+I +  +   GG
Sbjct: 604 EPAGERLSLSVADTGPGIAPGDVDLLFRRFSQVDAGLTRKHGGTGLGLAICKGLVEAMGG 663

Query: 771 HVSISSSDEGVTTINC 786
            + ++S        + 
Sbjct: 664 QIGVTSVPGQGACFSF 679


>gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 1149

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 158/339 (46%), Gaps = 10/339 (2%)

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     L       +    + + +    +     ++   +    + + ++E +     L+
Sbjct: 367 NELMERLGGNLGISIESARYRQRLQEVLAETQQLNEELQVQQEELKTANEELEEQSRVLK 426

Query: 520 LLSDSVLEYSIIPLP------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
             S + LE     L       + +T        + V+A+  L  + + L+++ + K+ F+
Sbjct: 427 E-SQAHLETQQAELEQTNEQLSERTEALDRKNDELVQAQEELQARADELQRSSKYKSEFL 485

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PL + +    LL  +  G+L+ +Q ++ E I ++   LLNL+NDILD+A V
Sbjct: 486 ANMSHELRTPLNSSLILAKLLAENAEGNLSDEQVKFAESIYSAGNDLLNLINDILDIAKV 545

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           +AG +++   +  +  L+  ++           +  +V ++ ++  +   DRQRL QI  
Sbjct: 546 EAGKLEVRPESTQVERLVEGLRGMFEPLAGHKGLAFEVTAEAQVPATLFTDRQRLEQILK 605

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +LSNA+ F+ +G   +    +     +F+V++ G  I  D  +++F  F        RR
Sbjct: 606 NLLSNAIKFTERGKVSLNIGYQPGTGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRR 665

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGLSI     +L GG +++ SS    +  +  +P
Sbjct: 666 YGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFSLILP 704


>gi|307945357|ref|ZP_07660693.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4]
 gi|307771230|gb|EFO30455.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4]
          Length = 512

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 4/236 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASS 617
                 A+  K+ F+  +S+ELR+PL  I+GF++++K   LG + ++Q   Y   I  S 
Sbjct: 257 RRRAEAANMAKSRFLATMSHELRTPLNAILGFSEVMKDEVLGPMQNEQYKSYAADIHGSG 316

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLNL+N+ILDL+ ++AG  +L    I + +++ E    +  +  + NI +    + ++
Sbjct: 317 QHLLNLINEILDLSRIEAGRHELQEEEISVTEIVEECLNMMQIRADDRNITLHNHLEKEM 376

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
               AD + + Q+   +LSNA+ F+  G  V +       G    SVK+NG  IPED   
Sbjct: 377 PKVWADERAVRQVVLNLLSNAVKFTPIGGDVRITVGWTSGGGQYVSVKDNGPGIPEDEIP 436

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            V   F   +   +   +G GLGLSIV++ +N+HGG  ++ S     T     +P+
Sbjct: 437 VVMEAFGQGSMAIKSAEQGTGLGLSIVQALVNMHGGKFTLRSKMHEGTEALMTLPA 492


>gi|153838733|ref|ZP_01991400.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810]
 gi|149747858|gb|EDM58738.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810]
          Length = 723

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 113/238 (47%), Gaps = 7/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S  
Sbjct: 460 RNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDS---GLNPIQKRYAEIINRSGK 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD + ++AG +++      L+ ++ +  Q + ++  E  +      +  + 
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
            +   D  R+ Q+ + ++ NA+ F+  G   + +     D    +F V + G  I +   
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 636

Query: 736 KSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K++F+ F        Q  G GLGL+I +  +   GG + + S +   +     IP +E
Sbjct: 637 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEE 694


>gi|54294799|ref|YP_127214.1| transmission sensor LetS [Legionella pneumophila str. Lens]
 gi|53754631|emb|CAH16115.1| Legionella transmission sensor LetS [Legionella pneumophila str.
           Lens]
          Length = 910

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 139/315 (44%), Gaps = 14/315 (4%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A   R   +    +    I  S   E   ++     L    L  ++  L +   + T  
Sbjct: 211 IARLRRSMKQILSNEFETEIRVSSPGELGIIEKGCAHLQRQYLN-TVRDLNHHIEIATAD 269

Query: 544 NVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                   E     L+ + +   +    K+ F+ ++S+E+R+P+  +IGFT++L  SKL 
Sbjct: 270 LQQSLELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLD 329

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  YV+ I +S+  LL+++N ILD + +DAG + L+   + +   ++EV    + 
Sbjct: 330 PL---QLDYVKTIKSSAQDLLSIINAILDFSKIDAGKLNLDCIPLDVRGCIDEVLSLASP 386

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
             H+  I +  I+D  +    + D  R+ QI S +++NA+ F+  G   +  K  ++   
Sbjct: 387 NAHKKVIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDK 446

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
               +F++ + G  I  +    +F  F         +  G GLGL I +       G +S
Sbjct: 447 DYTLLFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRIS 506

Query: 774 ISSSDEGVTTINCRI 788
           ++S     +T + RI
Sbjct: 507 LTSEINKGSTFSARI 521


>gi|326793449|ref|YP_004311269.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326544213|gb|ADZ89433.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 1148

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT      +      +RAL +  E   +A+E K+ ++  +S+ELR+PL +IIG+  LL
Sbjct: 651 NRQTRKLVKEIDAHQETDRALQDAKELAERANEAKSRYLTGISHELRTPLQSIIGYAQLL 710

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              K     ++    ++ I  S   L +L+  +LD++ ++AG   L  +T+ L +L+ ++
Sbjct: 711 SDKK--DAPTQHQNGLDIIQRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPNLIEQL 768

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +     +     I  ++     L    + D +RL QI   +LSNA+ ++ KG  V     
Sbjct: 769 ESMFEMQARGKGIEFELNIRAPLPRLVITDEKRLRQILINLLSNAVKYTQKG-KVTFDIN 827

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             N    F + + G  I E+  + +F+ F  V + +     G GLGL+IV+    + GG 
Sbjct: 828 YRNQVAEFHIVDTGVGIKEEYLQRIFDPFERVRDRYSANLPGTGLGLTIVKLLTEIMGGD 887

Query: 772 VSISSSDEGVTTINCRI 788
           +   S     +     +
Sbjct: 888 LKARSEVGSGSEFTVSL 904


>gi|119503200|ref|ZP_01625284.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2080]
 gi|119460846|gb|EAW41937.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2080]
          Length = 664

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 123/262 (46%), Gaps = 9/262 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N+  +          +A +AL    +  +   + K SF+ ++S+E+R+P+  ++G   L+
Sbjct: 221 NSMLLAIEDREHSLQQAIKALEVARDEAQHVADTKTSFLANMSHEIRTPMNGVVGMISLI 280

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K ++   L+ +Q  Y + I  S+  LL +++DILD   +++G +++  +   L+DLL  +
Sbjct: 281 KETE---LSKRQRVYFDTIEKSAAGLLVVIDDILDFTKLESGHLRIRTAPFSLSDLLATL 337

Query: 655 KQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VIL 710
                 +     ++ +++S DG     + D  RL Q+   ++ NA+ F+ +GS    V  
Sbjct: 338 NTIFEMQAANKGLKFQLVSADGLPDRVIGDPARLRQLLLNLIGNAVKFTDEGSVELLVTP 397

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
            A  +     F V + G  IPE+    +F  F            G GLGL++      L 
Sbjct: 398 IAESEASLIRFEVVDTGIGIPEEKQPGIFKEFYQVDITSTRAYGGTGLGLALCRELAQLM 457

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG VS SS++   +     +P 
Sbjct: 458 GGSVSFSSTEGEGSCFWLDVPL 479


>gi|78355417|ref|YP_386866.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217822|gb|ABB37171.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 1070

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 151/377 (40%), Gaps = 22/377 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIA 484
            +  +  +   +  +   +G+     +GR   +N A   +  + + E  +   T I +  
Sbjct: 386 RELLSAREEYRKIFEGSVQGIYQTTLEGRFIKANRALARMLGYGSAEELIGTVTDIGSQL 445

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFV 543
                            + ++ F+       G+   +S SV L Y    LP  Q +   +
Sbjct: 446 YVNPADRQRLKSLLSTRSSLSDFETRFYRRDGSQVPVSISVRLVYDENDLP--QYLEGAL 503

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                    R   ++ EA   A + K+ F+  +S+E+R+PL  ++G  DLL  S    L 
Sbjct: 504 TDITERERRREAEQQREAAEAASKAKSEFLARMSHEVRTPLNAVVGMADLLWES---DLT 560

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  YV+    S   LL L+NDILD + ++AG + L      L D L       A +  
Sbjct: 561 PDQRLYVDIFRKSGQTLLALLNDILDYSRLEAGRLTLERLPFSLRDTLTMTVNMHAAQAE 620

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
              + + +  D  L  ++  D  RL QI   +LSN++ F+ +GS V +      G     
Sbjct: 621 SRQLSLSLHVDETLPDNYCGDSLRLRQILGNLLSNSIKFTREGS-VEVHVGPAPGQQELT 679

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
                     V++ G  IPE++ +++F  F        R   G GLGLSI      + GG
Sbjct: 680 AGEPVMVRICVRDTGIGIPENVQQTIFESFTQADSSITRQFGGTGLGLSICRMLTTMMGG 739

Query: 771 HVSISSSDEGVTTINCR 787
            + + S+    T +   
Sbjct: 740 RIWLESTQGQGTAVYVE 756


>gi|326776200|ref|ZP_08235465.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
 gi|326656533|gb|EGE41379.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1821

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 25/315 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +     D  + L+   + L  S  E      L   Q     V  T+   A + L E+ 
Sbjct: 1272 QELTEQLRDRSQELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERA 1331

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+L+ KQ ++ E I  + + 
Sbjct: 1332 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSD 1391

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  
Sbjct: 1392 LLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPA 1451

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KAARDNGD 718
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         + D
Sbjct: 1452 TLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGADVPNAIREHLLEAGSLRDADAD 1511

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I FSV + G  I       +F  F         +  G GLGLSI      L GG +  +
Sbjct: 1512 LIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAA 1571

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1572 SEPGRGSTFTLYLPL 1586


>gi|229918207|ref|YP_002886853.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469636|gb|ACQ71408.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 852

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 153/378 (40%), Gaps = 33/378 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +           +D + E V            N     ++    +  S           
Sbjct: 485 EEMKREKGKTERILDSIREAVVYIDHSTNDVFVNRPLYEMFPELSDVSSQDLEEETWEEW 544

Query: 487 CSRYYNESDGWDLFAAIITSFDDE----------RKSLQGTLELLSDSVLEYSIIPLPNA 536
            +R     D  + F         E           +  +  L++ ++ +    I+   + 
Sbjct: 545 RNRLVETVDQAEDFTKYTNRLFTEDFPHDSVSFSIRKGEMNLQMYAERI----IVGGLSK 600

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T+L F ++T    AER              +K+ F+  +S+ELR+PL++I GFT+L+  
Sbjct: 601 GTLLVFRDITSETEAER--------------LKSEFISTISHELRTPLSSIYGFTELMVK 646

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +L   N KQ++Y+E I + +  L +LVND LD+  +++G    +   + +  ++ ++  
Sbjct: 647 KQLP--NEKQAKYLETIHSETERLTHLVNDFLDVQRMESGSQMYDREQLDIEPVVRDMLT 704

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                  ++   + +  D +      D Q+  Q+ S +LSNA+ +S +G  + ++ A   
Sbjct: 705 FYEASSLKHEFEL-IADDARPYELFVDCQKFKQLMSNLLSNAVKYSPRGGKITVELAHHE 763

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 VK+ G  IP D    +F++F    +   R   G GLGL I +  +  H G + +
Sbjct: 764 QIVSIKVKDEGIGIPSDALDRLFDKFYRVDNSDSREIGGTGLGLPICQEIVRGHNGQIHV 823

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     +T    IPS E
Sbjct: 824 ESIQHEGSTFIVEIPSYE 841



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +  +   T  IL ++  A+   D +    F NR   E++  +L+ +++    +E  E 
Sbjct: 485 EEMKREKGKTERILDSIREAVVYIDHSTNDVFVNRPLYEMFP-ELSDVSSQDLEEETWEE 543

Query: 359 LRSANKLPEQLNW-KTWKENIFSVYKSSETHKDT-WHLPNGQT-LHVIVTSNPRG----G 411
            R  N+L E ++  + + +    ++     H    + +  G+  L +       G    G
Sbjct: 544 WR--NRLVETVDQAEDFTKYTNRLFTEDFPHDSVSFSIRKGEMNLQMYAERIIVGGLSKG 601

Query: 412 TIWMFENLTVQVDLET 427
           T+ +F ++T + + E 
Sbjct: 602 TLLVFRDITSETEAER 617


>gi|170749613|ref|YP_001755873.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
 gi|170656135|gb|ACB25190.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
          Length = 1936

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 165/376 (43%), Gaps = 23/376 (6%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +N   +     +D L+E + +         +N     L K  +           + + 
Sbjct: 1117 ASFNRFSETHQSFLDQLTESIGIV---LNTIAANMRTEGLLKQSQLLTG------ELQSR 1167

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   +D  +L AA +   +D  KS +  L+  ++ + E +   L   Q         
Sbjct: 1168 QEELKKTNDRLELQAASLQQSEDLLKSQRERLQQTNEELEEKA--RLLEIQKREVEGKNR 1225

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +   A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ
Sbjct: 1226 EVSIAKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQ 1285

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++ + I+A+ T LL+L+NDILDL+ +++G + L    + L DL+  + ++      E +
Sbjct: 1286 REFAKTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDLVENLNRTFRQLAEERH 1345

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------- 717
            +   +  +  L  +   D +RL Q+   +LSNA  F+ KGS V L+     G        
Sbjct: 1346 LAFVIDVEPGLPRAVRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLRIGSAEGSPLRAGSQ 1404

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                SV + G  I ED  + +F  F         +  G GLGL+I      L GG + + 
Sbjct: 1405 WLALSVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVE 1464

Query: 776  SSDEGVTTINCRIPSK 791
            S     +T    +P +
Sbjct: 1465 SRVGSGSTFTLFLPFE 1480


>gi|221234053|ref|YP_002516489.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
 gi|220963225|gb|ACL94581.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
          Length = 600

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 154/363 (42%), Gaps = 11/363 (3%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +Y + +      +D L          G++     A               T    +    
Sbjct: 201 RYASEIIGLETLLDGLPHLAIAVRGQGQVTAVRGAA----------PPGVTRADLVNRGL 250

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +      D   L AAI  +  +   SL     L  + V+   +  +   Q +    ++T 
Sbjct: 251 TGAAAPGDRQRLTAAIAQAHREGSASLTFNPALGVERVVALDMHRVAPNQLVGVLRDITV 310

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E AL +           +  F+ ++S+ELR+PL  I+GF+D+++    G L+ + +
Sbjct: 311 ERHREHALDQARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYA 370

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y E I  S   LL+L+ND+LD++ ++A   +L        + +    + +  +     +
Sbjct: 371 EYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGV 430

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +         ADR+ L QI   ++SNA+ F+ +G  V + A   +G     V + G
Sbjct: 431 QLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTG 490

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  +  + +   +       QR RG GLGLS+V +F  LHGG + I S     TT++ 
Sbjct: 491 VGISPEDLERLGRPYEQAGGAEQRARGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSV 550

Query: 787 RIP 789
           R+P
Sbjct: 551 RLP 553


>gi|166033331|ref|ZP_02236160.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC
           27755]
 gi|166027688|gb|EDR46445.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC
           27755]
          Length = 1077

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 163/418 (38%), Gaps = 31/418 (7%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRI 456
           + + +          +    ++T    +E+  +  +     +++ L + +  +       
Sbjct: 381 RNVIIRGEIEDSEYAMIFLRDITE-TKVESARHLQMAADNASMELLIQSIVRLVDRFVVC 439

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N  +       +    P     +        Y   +  +    +I   D+ RK L+ 
Sbjct: 440 DLENDRYEFYNLNGQMIYKPLGFYHDFQMQVLEKYKTLEPLEAIDILIAP-DNIRKKLKS 498

Query: 517 T-----LELLSDSVLEYSI---IPLPNAQT---------MLTFVNVTDSVRAERALTEKN 559
                  E  S     Y I   IPL              M         + + +AL E  
Sbjct: 499 ENDIYKFEYCSQDEKTYKIASYIPLEWEDGKLVKVLLASMDVTQEKKAEIESRQALKEAY 558

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +   A+  K  F+ ++S+++R+P+  I+G T +           +  + +  I+ SS  
Sbjct: 559 RSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAI--AGANIESQERVIECLGKITESSRH 616

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLG 678
           LL L+N++LD+A +++G M L      L++L++ +       + E+     +  +  +  
Sbjct: 617 LLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHE 676

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPE 732
           +   D  R+ Q+F  ++SNA+ ++  G  +I             G + F++++NG  +  
Sbjct: 677 AVCGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSP 736

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  K +F+ F     +   R  G GLG++I  + +NL  G + + S+    T I   I
Sbjct: 737 EFQKIMFDPFSRADDQRTTRVQGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 794


>gi|163814849|ref|ZP_02206237.1| hypothetical protein COPEUT_00999 [Coprococcus eutactus ATCC 27759]
 gi|158449788|gb|EDP26783.1| hypothetical protein COPEUT_00999 [Coprococcus eutactus ATCC 27759]
          Length = 599

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  ++VT     E  L++       A + +  F+ ++S+E+R+P+  I+G   L  T   
Sbjct: 192 MVVIDVTKQKETEEKLSKAIVDANAAYKTQAEFLANMSHEIRTPINGILGMLQL--TLMA 249

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L +     +      +  LL L+NDILD++ ++AG  K+   T  +   + +   +  
Sbjct: 250 EDLQADYRDNLITAKNCADTLLRLINDILDISKLEAGKYKIKEETFDIRTAIEDTVAAQV 309

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                  +++       +   V  D QR+ Q+ + +LSNA+ F+S+GS  +  A+ D+G+
Sbjct: 310 PIATNKGLQLDCSFGSNIPKLVRGDGQRIQQVLNCLLSNAIKFTSEGSVRVKIASMDDGE 369

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                  +V + G  I E     +F RF  V  +   +  G GLGL I +  + L GG++
Sbjct: 370 NKIKIRMAVADTGIGISEANMSKLFIRFSQVDASDTRKYGGSGLGLVITKQIVELMGGNI 429

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S ++  +T    IP K
Sbjct: 430 TVQSKEDIGSTFIVEIPLK 448


>gi|220929081|ref|YP_002505990.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999409|gb|ACL76010.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 594

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 152/357 (42%), Gaps = 25/357 (7%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
             + I  +SEG+  F        +N A   +                     S    +  
Sbjct: 263 MSDIISSISEGLVAFNLKLEPLNNNNALSDIMNRTHPYK-------------SELLTKDF 309

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
                  +IT    E+KS Q T   ++   L +++ P+ + +  +T   V         L
Sbjct: 310 ESLEINLMITKVIKEKKSFQVTKNWMNKK-LRFTLSPIIDNKGNVTGCVV---------L 359

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                   + ++++  FV +VS+E R+PLT I G  + L    + +      +Y   + +
Sbjct: 360 VLDISESERLEQLRKDFVANVSHEFRTPLTVIKGSIEALIDGTIDN-KEDIERYYGRMLS 418

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  LV D+L+L+ + +G + +N   + +  LL+++ +S+ T      I I      
Sbjct: 419 ETKSLQRLVGDLLELSRLQSGKISVNNELVHIPSLLSDITKSMQTIAIMKEISIVYTPIN 478

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            + +   D  RL Q+F   + NA+ +S + + + ++AA  +     S++++G  I E+  
Sbjct: 479 DVPAVSGDYDRLRQLFVIFIDNAIKYSPQKTEIHIRAAVKS-TLEISIEDHGYGISEEEL 537

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             V++RF       +  G GLGL+I +  I LH G V I SS    TT+   +P  +
Sbjct: 538 PYVWDRFYKTDKSREGGGTGLGLAIAKHLIKLHKGSVIIKSSLGKGTTVTVSLPFAK 594


>gi|169797173|ref|YP_001714966.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
 gi|215484636|ref|YP_002326871.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
 gi|239500717|ref|ZP_04660027.1| Sensor protein gacS [Acinetobacter baumannii AB900]
 gi|260556077|ref|ZP_05828296.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606]
 gi|301345776|ref|ZP_07226517.1| Sensor protein gacS [Acinetobacter baumannii AB056]
 gi|301511166|ref|ZP_07236403.1| Sensor protein gacS [Acinetobacter baumannii AB058]
 gi|301594979|ref|ZP_07239987.1| Sensor protein gacS [Acinetobacter baumannii AB059]
 gi|332856912|ref|ZP_08436321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013150]
 gi|332867184|ref|ZP_08437449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013113]
 gi|332874024|ref|ZP_08441959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
 gi|20271376|gb|AAM18622.1|AF497904_1 GacS-like sensor kinase protein [Acinetobacter baumannii]
 gi|169150100|emb|CAM87994.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
 gi|213986830|gb|ACJ57129.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
 gi|260410132|gb|EEX03431.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606]
 gi|322506795|gb|ADX02249.1| barA [Acinetobacter baumannii 1656-2]
 gi|323516664|gb|ADX91045.1| GacS-like sensor kinase protein [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332726966|gb|EGJ58471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013150]
 gi|332734123|gb|EGJ65255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6013113]
 gi|332737765|gb|EGJ68657.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
          Length = 935

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  
Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRK 334

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 335 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYAD 394

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    + D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 395 NIPQQVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIG 453

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGS 513

Query: 783 TINCR 787
           T    
Sbjct: 514 TFWFT 518


>gi|302188965|ref|ZP_07265638.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 595

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 148/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGH---------SLGEALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|297581765|ref|ZP_06943687.1| sensor histidine kinase [Vibrio cholerae RC385]
 gi|297534172|gb|EFH73011.1| sensor histidine kinase [Vibrio cholerae RC385]
          Length = 1147

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 170/414 (41%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 597  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 656

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 657  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 715

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 716  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 775

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 776  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 835

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 836  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLV-- 890

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++ KG  V L   R  G     V +NG  I ED 
Sbjct: 891  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPKG-KVTLGVRRVAGQVRIDVWDNGIGIEEDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F   +     +G+GLGL+I +   ++ G H+ + S     +  +  +
Sbjct: 950  QQEIFEEFNRGSQVRSDQGLGLGLAISKGIAHVLGHHILMRSWPGQGSVFSITL 1003



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 617 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 676

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 677 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 735

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 736 MSFTDITVFREAEQSLKMANETLEE 760


>gi|295688289|ref|YP_003591982.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430192|gb|ADG09364.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 565

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K++FV  +S+ELR+P+  ++G    L T++   L+ +Q++YV+ I  S   L+ ++N
Sbjct: 197 SRSKSAFVAMMSHELRTPMNGVLGLAHALSTTR---LDVRQAEYVDMIIQSGDGLMTILN 253

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILDL+ ++AG ++L  +   +  L  +++   +       + + +  D       + D 
Sbjct: 254 DILDLSKIEAGKLELEIAPFDIRALAGQIRLLWSETARGKGVELALEVDPATPAWLLGDA 313

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            R+ QI   ++SNA+ F+  G  V++  A   G+ + SV + G  +  +    +F  F  
Sbjct: 314 ARVRQILMNLVSNALKFTLAG-RVVIGVAPAEGEIVLSVTDTGVGLTAEQRARLFAPFAQ 372

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 RR  G GLGL+I      L GG + + S     +T   R
Sbjct: 373 GDRSTARRFGGTGLGLAICRHLAELMGGAIGVESEPGVGSTFTVR 417


>gi|282882283|ref|ZP_06290915.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297877|gb|EFA90341.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
           lacrimalis 315-B]
          Length = 581

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/401 (22%), Positives = 169/401 (42%), Gaps = 43/401 (10%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKL 458
            V V SN   G +  MF  LT ++      N L + +  TI ++++EGV       ++  
Sbjct: 206 RVDVKSNDEIGQLGNMFNYLTDELKNTIAKNDLERSKLNTIFNYMAEGVIAVDRTNKLIH 265

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +N   ++L   +++R++   +++ I      Y                  D  KSLQG +
Sbjct: 266 ANSIAKNLLSLDDSRINTQINLKKIGLKDINY------------------DIEKSLQGEV 307

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQH 575
                      +  + N    L +      ++    L      + K      ++  FV +
Sbjct: 308 -----------LAEIKNHFYKLKYAPYKSDLKENEGLIIVLSDINKEHRLDVLRKEFVAN 356

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+EL++P+T I  +T+ L     G      + +++ I   +  +  LV+D+L L+ +D 
Sbjct: 357 VSHELKTPITTIGSYTETLLNGVAG---EDINHFLKVIERENARMARLVSDLLVLSNIDY 413

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
               LN  +    + + E  +S +  + + +  I +    K+ +  +DR    QI   I+
Sbjct: 414 KKEHLNKESFDCYEFIEEAVESQSLLISQKSHNISIDVPIKIRTIYSDRHGASQILINII 473

Query: 696 SNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
           SNA+ ++ +G  +++ A       N     SVK+NG  IP++    +F RF         
Sbjct: 474 SNALKYTKEGGKILIAAENYKNGKNNFVKISVKDNGIGIPKEDLPMIFERFYRVEKGRSR 533

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  G GLGLSI    I   GG + ISS+    T +    P+
Sbjct: 534 EMGGTGLGLSIANEMIKSLGGSIKISSTLNVGTNVELFFPA 574


>gi|226287246|gb|EEH42759.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb18]
          Length = 1285

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L     + +  + + + 
Sbjct: 698 REAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT--DDLKPYPREMLNVVHSLAN 755

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +++A K +E  + +    D  + 
Sbjct: 756 SLLTIIDDILDISKIEANRMVIERIPFSMRGAVFNALKTLAVKANEKILNLIYQVDSSIP 815

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------FSVKNNGSSI 730
            FV  D  RL QI   ++ NA+ F+ +G   +     D  +         F V + G  I
Sbjct: 816 DFVTGDPFRLRQIILNLVGNAIKFTERGEVRVTILKSDREECRPNEYSFEFIVSDTGIGI 875

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            ED    +F+ F        R   G GLGLSI +  +NL GG V ++S     +  +  
Sbjct: 876 EEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGHGSKFHFT 934


>gi|224585125|ref|YP_002638924.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469653|gb|ACN47483.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 788

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 150/374 (40%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 150 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 209

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 210 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 264

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 265 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 321

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 322 --NLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 379

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 380 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 438

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 439 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 498

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 499 VSSLPGKGSTFTLT 512



 Score = 44.2 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 146 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 205

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------ 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 206 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 261

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 262 RVGKRHGLMGFGRDITERKRYQDALER 288


>gi|110834459|ref|YP_693318.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647570|emb|CAL17046.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
           SK2]
          Length = 942

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 11/274 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPL 584
           LE  ++ L  A+ +        +   +RA+   +       +  K+ F+  +S+E+R+P+
Sbjct: 397 LEVVLLSLALARRINRLKEAHSNSVRDRAIAEMEAFKAGARNHAKSEFLATMSHEIRTPM 456

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G TDLL+ +    +  +Q QYV  I  S+  LL ++NDILD + +++G ++L+Y +
Sbjct: 457 NGIMGMTDLLRRT---DMTQQQEQYVGTIYQSTQSLLRVINDILDYSKIESGKLELDYRS 513

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
           I L +++++  +  A    E  + + +  D ++      D  RL QI + +LSNA   + 
Sbjct: 514 IALENIVDDCVRLFALHSSEKGLPLYIHIDSRVPERIKTDPIRLKQIITNLLSNAFKCTD 573

Query: 704 KGST---VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           +G     V LK   +N         V + G  + E    S+F  F   + + +  G GLG
Sbjct: 574 RGHIALHVNLKQPPNNKGVCMLMIEVVDTGIGLDEGQQSSLFQAFTDLSAKTKHNGAGLG 633

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L I +  I L GG + +SSS     T    +P +
Sbjct: 634 LVICKRLIELLGGEIGVSSSLGRGATFWISLPVE 667


>gi|304406484|ref|ZP_07388140.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344542|gb|EFM10380.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 1088

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 120/243 (49%), Gaps = 5/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQ 608
           +A R + + +E L   D++K+ F+   S+ELR+PL  IIG T+ L     GS L+++++ 
Sbjct: 414 KAFRQVEQLSERLLSLDKLKDEFLARTSHELRTPLHGIIGLTESLLDGPAGSRLSAEENG 473

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ I +S   L +LVNDILD + +    ++L+  TI ++ ++  V   +        + 
Sbjct: 474 HLQLIRSSGQRLAHLVNDILDFSKLRNREIQLHPVTINVHQIVELVLHLLRPLAEGKGLL 533

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +       L    AD  RL Q+   ++ NA  F+ +G  V + A +       ++K+ G 
Sbjct: 534 LINEVPPAL-QVRADENRLHQMLHNLVGNATKFTLQGHVV-ISARKQARQITINIKDTGI 591

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ++    +F  F         R  G G+GLSI +  + LHGG +   S+    ++ + 
Sbjct: 592 GIAQESLGVIFESFEQLDPTTNSRFGGTGIGLSITKKLVELHGGRIWAESTPGLGSSFSF 651

Query: 787 RIP 789
            +P
Sbjct: 652 TLP 654


>gi|228919830|ref|ZP_04083188.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839846|gb|EEM85129.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 896

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    +ND+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNINDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+  GS             + D     N 
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTETGSVSLHFDSIETTNLSPDMQSISND 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WMKISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|225389641|ref|ZP_03759365.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM
            15981]
 gi|225044297|gb|EEG54543.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM
            15981]
          Length = 1430

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 9/246 (3%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            R +R L        +A+  K+ F+  +S+++R+P+  I+G T  L  + LG    + +  
Sbjct: 1043 RTKRELENALSRAEEANRAKSDFLSTMSHDIRTPMNAIMGMT-ALAMAHLGD-QERVTDC 1100

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++ IS SS  LL+L+NDILD++ +++  + LN   I + ++L ++   ++++     +  
Sbjct: 1101 LQKISISSRHLLSLINDILDMSKIESSQITLNRMRISIREMLGQLSAIMSSQARSAGLTF 1160

Query: 670  KVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIFS 722
             + + +     F  D  R+ QI   ILSNA+ ++ +G  V  +A       RD   + F+
Sbjct: 1161 SIQAGEIVHPCFYGDALRINQILINILSNAVKYTPEGGCVDFQAEEIPPVGRDCARYRFT 1220

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            V + G  + E+    VF  F  +    +  G GLGLSI +  +NL GG +S+ S     T
Sbjct: 1221 VSDTGVGMTEEFLNHVFEPFTRSRQTTRVEGTGLGLSITKGLVNLMGGAISVESVVHQGT 1280

Query: 783  TINCRI 788
                 +
Sbjct: 1281 VFQVEL 1286



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 92/271 (33%), Gaps = 38/271 (14%)

Query: 188 LSNHISVFKVLFDSLDFLVW-HRDQAGDILWANIS---YKKNTETEGIVFQKAI-GESRK 242
           LS    +F+ L   L   ++    +  D+L+ N S   +    E  G    +A+ G+ R 
Sbjct: 398 LSAENRLFQNLAGDLADGIYVIEKENYDLLYVNESKRFFADGRERVGQKCYQALYGKDRP 457

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
                +K R       E    ET S      + S++            I  DV+  + + 
Sbjct: 458 CEYCSLKTREPDGLEHEMIVPETGSFY----STSFRETDWNGIPAYVKIVRDVTGAVELR 513

Query: 303 DQLTHTYE----ILHNLTVAIAI--FDQNRYL--QFHNRSFVELWE--IDLAFLATNPSN 352
            +     +    +L NL   +A+   D    +  +F +  F  + E  +D A+       
Sbjct: 514 REKERLAQYFETVLKNLPGGVAVVRLDAQGKMEPEFMSEGFAAMTEMTMDQAW------- 566

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNG--------QTLHVI 403
            EL      A   PE   +      +       E H +  + L  G         TL +I
Sbjct: 567 -ELYRRDAMAGVHPEDRGY--VNRQMAEYIAGDENHCEIVYRLRKGGGGYVWVKNTLSLI 623

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
            +         ++ ++T + + +++     K
Sbjct: 624 ESEAGEARVYSVYRDMTREREEQSRLRQQYK 654


>gi|186470431|ref|YP_001861749.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184196740|gb|ACC74703.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 2010

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 142/303 (46%), Gaps = 20/303 (6%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             S   E +S Q  L+  ++ + E +   L   Q        T+  +A +AL EK + L  
Sbjct: 1260 QSLARELQSRQEELQTTNEELQEKA--RLLAHQNQEVERKNTEVEQARQALEEKAKQLAL 1317

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              + K+ F+ ++S+ELR+PL +++  +D L  +  G+L+++Q ++   I +S   LL L+
Sbjct: 1318 TSKYKSEFLANMSHELRTPLNSLLILSDQLCKNSEGNLSTRQIEFSRTIHSSGNELLMLI 1377

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            NDILDL+ +++G + ++++   L DL + V+++        N+   +     L  S   D
Sbjct: 1378 NDILDLSKIESGTVAMDFAEHRLADLTSYVERTFRHVAEARNVDFVIELGTHLPASIRTD 1437

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------------IFSVKNNGSS 729
             +RL QI   +LSNA  F+ +G  V L     +G +               FSV + G  
Sbjct: 1438 IKRLQQILKNLLSNAFKFTHRGH-VTLSVEEVSGGWSADNERLHSAPACIAFSVSDTGIG 1496

Query: 730  IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I  D  + +F  F        R   G GLGL+I      L GG + + SS    +T    
Sbjct: 1497 ISADKQQIIFEAFQQADGSTSRKYGGTGLGLAISRELSKLLGGEIRLISSPNKGSTFTLY 1556

Query: 788  IPS 790
            +P 
Sbjct: 1557 LPL 1559


>gi|159127382|gb|EDP52497.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus A1163]
          Length = 2333

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A   K+ F+ ++S++LR+P+  +IG ++LLK +    L+ +Q +YV
Sbjct: 1870 AEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLKGTI---LSKEQDEYV 1926

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1927 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGLVTI 1986

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVK 724
               D      V   D  RL QIF  +LSN+  F+ KGS TV  K +R+  +      +V 
Sbjct: 1987 EDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVS 2046

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F            G GLGLSI ++ I  + GG + + S+    
Sbjct: 2047 DTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVG 2106

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2107 TTVTFHL 2113


>gi|167767207|ref|ZP_02439260.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1]
 gi|167711182|gb|EDS21761.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1]
          Length = 1068

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 167/403 (41%), Gaps = 31/403 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEE 471
           +    ++T    +E+  +  +     +++ L + +  +        L N  +       +
Sbjct: 387 MIFLRDITE-AKVESARHLQMAADNASMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQ 445

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-------LSDS 524
               P     +        Y   +  +    +I   D+ RK L+   ++       + + 
Sbjct: 446 MIYKPLGFYHDFQMQVLEKYKTLEPLEAIDILIAP-DNIRKKLKSENDIYKFEYCSMDEK 504

Query: 525 VLEY-SIIPLPN-----AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQ 574
             +  S IPL        + +L  ++VT   +AE    +AL E   +   A+  K  F+ 
Sbjct: 505 TYKIASYIPLEWKNGKLEKVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLS 564

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+++R+P+  I+G T +           +  + +  I+ SS  LL L+N++LD+A ++
Sbjct: 565 NMSHDIRTPMNAIVGLTAI--AGANIESQDRVIECLSKITESSRHLLGLINEVLDMARIE 622

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSK 693
           +G M L      L+DL++ +       + E+     +  +  +  +   D  R+ Q+F  
Sbjct: 623 SGKMTLAQEDFNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVN 682

Query: 694 ILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           ++SNA+ ++  G  +              G + F++++NG  +  +  K +F+ F     
Sbjct: 683 LMSNAIKYTPDGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADD 742

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R  G GLG++I  + +NL  G + + S+    T I   I
Sbjct: 743 HRTTRVQGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785


>gi|160893754|ref|ZP_02074538.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50]
 gi|156864739|gb|EDO58170.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50]
          Length = 501

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 126/278 (45%), Gaps = 4/278 (1%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           TL+ + + +         N    +      +     R + E  + L +++E + SF+ ++
Sbjct: 195 TLKPIREIIATSKQYAAGNFNARIDVHTDNEFGELARYMEEMADELSRSNEYRRSFISNI 254

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S++ RSPLT+I G+ + +    +     K  +Y++ + + +  L  L   +L+L   D+ 
Sbjct: 255 SHDFRSPLTSIKGYIEAMIDGTIPP--DKHEKYLQIVLSETMRLTKLTQGLLELNNFDSF 312

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L+ S   +  ++     +   +  +  I +  I         ADR R+ Q+   ++ 
Sbjct: 313 DLQLDKSNFDIKSIILPTINTFEGRCQDKGIYLHAIFHTDNTIVYADRTRIQQVIYNLVD 372

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGV 754
           NA+ F+ +G  + ++    +     SVK+ G  IP +  K VF+RF          + G 
Sbjct: 373 NAIKFTPEGRQITVQVTEKSDKVYVSVKDEGVGIPPESIKKVFDRFYKTDPSRGKDKTGT 432

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I +  I  HG +++++S     +     +P ++
Sbjct: 433 GLGLAITKEIIKAHGENITLTSKVGEGSEFIFSLPMQK 470


>gi|27364012|ref|NP_759540.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus
           CMCP6]
 gi|27360129|gb|AAO09067.1| Aerobic respiration control sensor protein arcB [Vibrio vulnificus
           CMCP6]
          Length = 780

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +     +G     N A   L   +E++L   +  
Sbjct: 144 ERTQVELAERTAL--LRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   ++D          +++   +   G          E   +P  +     
Sbjct: 202 DVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDG-----RKHYFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++  
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q +Y++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A 
Sbjct: 313 -LTDEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISAL 371

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +    +L  +   D  RL Q+   ++SNAM F+ +G  V  + +  +   
Sbjct: 372 MAEQKGLRFDLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTVSSEVEEDF 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              I  V++ G  IPE     +F  +             G G+GL++    IN+  G ++
Sbjct: 432 ATIIIEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDIT 491

Query: 774 ISSSDEGVTTINCRI 788
           +SS +   +T    I
Sbjct: 492 VSSEEGFGSTFTISI 506



 Score = 44.5 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 56/149 (37%), Gaps = 15/149 (10%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +  + +E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ T   G
Sbjct: 133 MKDLENEVFQRERTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEELT---G 189

Query: 231 IVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVL- 283
               + +G S   ++ +E+ ++++ +             E       G    +++ +V  
Sbjct: 190 KKEHQLVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDGRKHYFELRKVPF 249

Query: 284 -----NSFGEAGIAIDVSKEITVNDQLTH 307
                   G  G   D+++     + L  
Sbjct: 250 YSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|223932686|ref|ZP_03624685.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus
           suis 89/1591]
 gi|223898656|gb|EEF65018.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus
           suis 89/1591]
          Length = 449

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 139/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L               + ++S+GV      GRI + N   +        + 
Sbjct: 75  LNDLSEVIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSSQK- 133

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+  +     RY       DL A       D     +  L L ++     S   L 
Sbjct: 134 QEQYHLLEVLDLSDRY----TLRDLLAQTPEIVIDHTNENEEFLTLRANFATIRSESGLI 189

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   ++   ++T+  + ER               +  FV +VS+ELR+PLT++  + + L
Sbjct: 190 SG-LVVVLHDMTEQAKEERE--------------RRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    S    +V+     +  ++ ++ D+L L+ +D  + +++   I     +  +
Sbjct: 235 DEGAL--TESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFI 292

Query: 655 KQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   +   +    I             D  ++ Q+   IL+NA+ +S  G T+   
Sbjct: 293 LNRFDQMKNADSDKVYTIVRDYQISPIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I SV + G  IP+     +F+RF          + G GLGL+I +  +  H 
Sbjct: 353 MKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGHGSTFTIVLP 432


>gi|149177489|ref|ZP_01856092.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
 gi|148843639|gb|EDL57999.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
          Length = 844

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/626 (16%), Positives = 230/626 (36%), Gaps = 74/626 (11%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
            ++        ++  +    S    +E     +I        F  T+        + Y +
Sbjct: 83  PAWSDLPIVVLLIAGEHASPSLNQLQELGNITLIRRPVRIAVFINTIRAKLRDRERQYSV 142

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
             +L    E    +++        + +   +        +A ++      + + +  +L 
Sbjct: 143 RDLLRERTEVNQNLEI-----QQRRFSLALK-----AGGMAAWELQNEKLYWSDAIYDLL 192

Query: 340 EIDLAFLATNPSNDELL--EFLRSANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPN 396
            +      T      ++  E L    ++ E    K    E  F +  S +  +  W    
Sbjct: 193 GLPPGEPVTLERFYSVIHPEDLPKLQEVWEASVRKNQSFEEEFRILYSGKEQR--WMELM 250

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG----------------ETI 440
           G+++   +  NP G    +F ++T +   E +     +++                  T+
Sbjct: 251 GESVEWEL-GNP-GHFAGLFWDITAEKVQEKREQRAAEIERFLSEATMTLAASLDFETTL 308

Query: 441 DHLSEGVA----------VFGPDGRIKLSNPA---------FRSLWKTEENRLSPGTHIR 481
           + ++              + G D  I+    A            L +T+           
Sbjct: 309 ESVTSLCVPTLGDWAILELIGDDHTIRRMKIAHSDPGASILAEQLMQTDSIPSLKERSAN 368

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           +        + E+   +L   ++ + +     R+    +L +++  + +     L   QT
Sbjct: 369 SHLFGNETIFVENLTEELLQEVVPTPEHLPVLRELGAESLIVVALGIRDLQFGVLTLIQT 428

Query: 539 MLTFVNVTDSVRAERALTEKNEAL----------RKADEIKNSFVQHVSYELRSPLTNII 588
                +     +    L  +              ++A   K+ FV ++S+E+R+P+T ++
Sbjct: 429 DAAHRHKISDFKTAEELARRASIAIDNARLYKIGQQASAAKSEFVANMSHEIRTPMTAVL 488

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+ DLL  S+    + ++ +++  I  + + LL+++NDILDL+ ++AG M+        N
Sbjct: 489 GYADLLAGSEN---DPEKLKHLRMIQKNGSFLLDIINDILDLSKIEAGKMECVTEYFAAN 545

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
           +L+ +V   +  +  E  +   V     + S   +D +RL QI   ++ NA+ F+S+GS 
Sbjct: 546 ELIADVYSMMHIRAAEKKLDFSVEYATTIPSQIESDPKRLRQILVNLIGNAVKFTSEGSI 605

Query: 708 VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
            ++ +   +G+     F V + G  I +     +F  F        R   G GLGL+I  
Sbjct: 606 RLVISYDASGEPPAIQFEVIDTGIGITDAQLSQLFQEFSQGDTSVTRAFGGTGLGLAISA 665

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
               + GG + + S     TT  C+I
Sbjct: 666 RLARMLGGSIEVHSKSGSGTTFTCQI 691


>gi|119468142|ref|ZP_01611268.1| sensory box histidine kinase/response regulator [Alteromonadales
           bacterium TW-7]
 gi|119448135|gb|EAW29399.1| sensory box histidine kinase/response regulator [Alteromonadales
           bacterium TW-7]
          Length = 954

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 10/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            LT+  E   KA++ K  FV ++S+ELR+P+  I+G   LL+TS   ++  KQ QY +  
Sbjct: 376 ELTQAIEETNKANKTKIDFVANMSHELRTPMNGILGMLQLLQTS---NMPVKQEQYAKKA 432

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S+  LL ++N+ILD + +D+  +KL      L+ +++ V+   +    +  + +  + 
Sbjct: 433 FSSAQSLLQVLNNILDFSKLDSDNLKLEKIPFTLDTIVSNVEDLFSINAQQKGLALNCVV 492

Query: 674 DGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGS 728
                 + + D  +L QI +  + NA+ F+ KG    T+ +   ++N     FS+ + G 
Sbjct: 493 HADRHLTLLGDPIQLNQIINNCIGNAIKFTDKGEVSLTIEVIFQKENKVQLRFSISDTGI 552

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + +     VF  F        R   G GLGL+I +    L GG + + S     +    
Sbjct: 553 GMTQAQSDRVFESFAQGDSSTTRKYGGTGLGLTISKQLTKLLGGDIQVKSELGKGSEFLF 612

Query: 787 RIP 789
            +P
Sbjct: 613 TLP 615


>gi|298480139|ref|ZP_06998338.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|299144696|ref|ZP_07037764.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298273948|gb|EFI15510.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298515187|gb|EFI39068.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 399

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 166/373 (44%), Gaps = 28/373 (7%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIK--LSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
               K     +D L + + VF  D  I    S+PA   +     N ++      N+    
Sbjct: 40  RFRDKYSTRILDALPDMLTVFDHDANIIELASSPATNHVEGISPNNITT----TNVKDIL 95

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTFVN 544
            +   ES   ++   I+T      +S     +L+ + VL   E  I PL     +    +
Sbjct: 96  PKEAYESVRKNMDKVILTG-----ESSTARHDLMLNGVLHHYENRIFPLDKEYLLCMCRD 150

Query: 545 VTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           ++    AE+        L        ++D +K++F+ ++S+E+R+PL  I+GF+ L+   
Sbjct: 151 ISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI--- 207

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +   +++QY E I  +S +LLNL NDILDLA+++A  +K N   I L D+  +++Q 
Sbjct: 208 TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDICLQLEQQ 267

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              K  +N +++ +           D  R++QI S +LSNA  F+ KG  +         
Sbjct: 268 FCHK-TQNGVKLILDDVDTDMYTSGDWNRIIQIISNLLSNATKFTPKGE-IHFGYREKED 325

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              F VK++G  IP     ++F RF       Q  G GLGL++    +   GG + + S 
Sbjct: 326 FVEFYVKDSGIGIPAARIATIFRRFGKVDDFVQ--GTGLGLTLCRMLVEKMGGRIWLRSQ 383

Query: 778 DEGVTTINCRIPS 790
           +   +     +P 
Sbjct: 384 EGQGSRFYFTLPL 396


>gi|70999294|ref|XP_754366.1| sensor histidine kinase/response regulator [Aspergillus fumigatus
            Af293]
 gi|66852003|gb|EAL92328.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus Af293]
          Length = 2333

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A   K+ F+ ++S++LR+P+  +IG ++LLK +    L+ +Q +YV
Sbjct: 1870 AEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLKGTI---LSKEQDEYV 1926

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1927 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGLVTI 1986

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVK 724
               D      V   D  RL QIF  +LSN+  F+ KGS TV  K +R+  +      +V 
Sbjct: 1987 EDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKNRVRLECAVS 2046

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F            G GLGLSI ++ I  + GG + + S+    
Sbjct: 2047 DTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVG 2106

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2107 TTVTFHL 2113


>gi|307153079|ref|YP_003888463.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306983307|gb|ADN15188.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 679

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 163/403 (40%), Gaps = 25/403 (6%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   +D L    ++G  +   + ++ L NPA R
Sbjct: 247 GELICSFNEMAERLERYEEQNIEEMTAEKAKLDTLVSTIADGAILLDTNLQLLLVNPAAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-----SLQGTLE 519
            L+  E   +     +       +    E          I S +   +     ++   + 
Sbjct: 307 RLFSWENKDVIGRNVLHLFPPELTVTLTEPLYQFAVGEQIESHEIHFQGSSQLTIHQEMH 366

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHV 576
                       P P    +L            + +    + + +    +E K+ F+ +V
Sbjct: 367 STPGEFRVTLSHPSPRTVRILLTQVFDQYRETVKGIAMTVQDITREVELNEAKSQFISNV 426

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL NI  F + L         S++ +++E  +  +  L  LVND+LDL+ +++ 
Sbjct: 427 SHELRTPLFNIKSFIETLTEFGDDLTESERREFLETANHETDRLTRLVNDVLDLSRLESS 486

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +  ++  + L  L+++  ++      + NI +    +  L + +     LLQ+ + ++ 
Sbjct: 487 RI-YHFDAVDLGQLIDQTLRTYQLNAKDKNIELYQEIEANLPTVLGHYDLLLQVITNLVG 545

Query: 697 NAMDFSSKGSTVILKA---------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           N++ F+  G  ++++A         +R        V + G  I  +  +++F+RF    +
Sbjct: 546 NSLKFTESGGRIVIRAYKLRPKSEHSRKASQVRIEVSDTGIGIDAEDQQAIFDRFFRVEN 605

Query: 748 RGQR-RGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTINCRI 788
           R     G GLGLSIV++ +   H   V + S     TT    +
Sbjct: 606 RVHTLEGTGLGLSIVKNIVEEKHRSKVHLISEVGVGTTFWFEL 648


>gi|26000240|gb|AAN75562.1| putative sensor protein BvgS [Bordetella avium 197N]
          Length = 1112

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 152/388 (39%), Gaps = 13/388 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             ++   +      E   +  +      ID +   V V   +GR+   N ++   +    
Sbjct: 455 IYYLRRQIGKXRVAERXLSDQLAFMXVLIDGIPNPVFVRXREGRMVTCNRSYLETFDVTR 514

Query: 472 NRLSPGTHIRNIAATCSRYYNE---SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
           + +   T I +          +   S+ W   A     F D   +L G    +   +  Y
Sbjct: 515 DAVQGRTLIDSPIGLEDPEQAKTVTSNIWTPAAQQRRRFQDIEVTLHGEKRYIYHWLXXY 574

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S         +  + ++T+ +R    L E  E    A+  K++F+  +S+E+R+P+  II
Sbjct: 575 SDSXGRVKGLIGGWTDLTERIRLLXDLHEAKEEADAANRAKSTFLATMSHEIRTPMNAII 634

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L                ++    S+  LL+L+ DILD++ ++A  ++L+     L 
Sbjct: 635 GMLELELRRPADQATD--RSALQITYDSARSLLDLIGDILDISKIEADRLELSPHPTDLR 692

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
            LL+ +         ++ + + +  D       + D  RL  + S ++SNA+ F+  G  
Sbjct: 693 KLLDGIINVFQGLARQHGLSLTLQIDPPHPXXVLLDATRLKXVISXLVSNALKFTEVGGV 752

Query: 708 VI---LKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFV---SNAHRGQRRGVGLGLSI 760
           ++   ++   D       +V ++G  I     + +F  F      A   +  G GLGL I
Sbjct: 753 IVSLKVRTXEDXRAKIELAVDDSGPGISSADRQRLFEPFXXVHDQAKAARAAGTGLGLVI 812

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
               I   GGH  +SS     T I+  +
Sbjct: 813 SRRLIEAMGGHFDLSSIPGKGTRIDVLL 840



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 12/149 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK--NTETEGI 231
           +  ++ +  +  + LS+ ++   VL D +   V+ R + G ++  N SY +  +   + +
Sbjct: 458 LRRQIGKXRVAERXLSDQLAFMXVLIDGIPNPVFVRXREGRMVTCNRSYLETFDVTRDAV 517

Query: 232 VFQKAIGESRKLFKEEIKKRMIS----SSALEKNFCETVSTLEHGNNK--SYKIVRVLNS 285
             +  I     L   E  K + S     +A ++   + +    HG  +   + +    +S
Sbjct: 518 QGRTLIDSPIGLEDPEQAKTVTSNIWTPAAQQRRRFQDIEVTLHGEKRYIYHWLXXYSDS 577

Query: 286 FGEAGIAI----DVSKEITVNDQLTHTYE 310
            G     I    D+++ I +   L    E
Sbjct: 578 XGRVKGLIGGWTDLTERIRLLXDLHEAKE 606


>gi|297199601|ref|ZP_06916998.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297147445|gb|EDY57506.2| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1376

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 15/262 (5%)

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +   +  R+   L EK   L  + + K+ F+ ++S+ELR+PL +++    LL  +  G 
Sbjct: 915  QMQQAELQRSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGH 974

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+ ++ Q+   I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +    
Sbjct: 975  LSDQEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPL 1034

Query: 662  MHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------- 712
              +  +  +V     +     +D QRL QI   +LSNA+ F++ G  V L+         
Sbjct: 1035 TLDRGLAFEVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTASG-RVELRVNRIKDPDH 1093

Query: 713  --ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
               RD+ D + F+V + G  I  +    +F  F        R   G GLGLSI      L
Sbjct: 1094 RYVRDSDDVVAFAVSDTGIGIAREKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGL 1153

Query: 768  HGGHVSISSSDEGVTTINCRIP 789
             GG +   S     +T    +P
Sbjct: 1154 LGGRIVAESEPGRGSTFTLYVP 1175


>gi|260768861|ref|ZP_05877795.1| sensor histidine kinase [Vibrio furnissii CIP 102972]
 gi|260616891|gb|EEX42076.1| sensor histidine kinase [Vibrio furnissii CIP 102972]
          Length = 796

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 158/371 (42%), Gaps = 28/371 (7%)

Query: 441 DHLSE---GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           DH  E   G+ +    G I +S   F        +R   G     +    +R       +
Sbjct: 197 DHAEEYGLGIKLHDAYGSI-ISEHNFHLRRGAYVSRYPFGDFHWQLEVVNARRLVNEQVY 255

Query: 498 DLFAAIITSFDDER------------KSLQGTLELLSDSV---LEYSIIPLPNAQTMLTF 542
           +L + +                    + L   + +++  V   +E  II +P        
Sbjct: 256 ELISGVERGLIPLLLLCVMFGYYLLNRYLIKPIVVIAQKVDESMEGGIIDVPYHSQDEIR 315

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L  S    L
Sbjct: 316 YLIDTFNQKTVYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKS---DL 372

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q Q ++ +  S   ++ L+N+ILD + ++ G ++L+ S+  L+ ++  V    +T  
Sbjct: 373 KPRQRQQMKSLYESGEHMMTLLNEILDFSKIEQGHLELDRSSFPLDSIIGSVTSVYSTLC 432

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGD-- 718
           +E  ++ KV S   +   + +D+ RL QI   +L+NA+ F+ +G   VIL+         
Sbjct: 433 NEKGLQFKVYSQIEENRWYYSDKARLRQILFNLLNNAVKFTYRGLVEVILEEETVGEQLY 492

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            I  V++ G  IP+D    +F  F        RR  G GLGL+IV+    L  G V++ S
Sbjct: 493 LIIQVRDTGIGIPKDAQNKIFKPFEQAESSTTRRFGGTGLGLAIVKQITELMRGSVNVVS 552

Query: 777 SDEGVTTINCR 787
                T+   R
Sbjct: 553 EVGIGTSFTIR 563


>gi|169335410|ref|ZP_02862603.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258148|gb|EDS72114.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM
           17244]
          Length = 526

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 144/337 (42%), Gaps = 27/337 (8%)

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R + K     +  G HIR +A        +++G +++  I     D  +          +
Sbjct: 198 RQIIKNHLIDIKAGNHIRFLAK-----LKDNNGENIWMQINADCIDWIRE---------E 243

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            V  +  I + +   +       +    E  L +  +  + A+  K+ F+  +S+++R+P
Sbjct: 244 PVYLFVCIDVTDLTDLRKMQTKLEKQSVE--LQKALKEAKNANRAKSEFLSSMSHDIRTP 301

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G T++ + + L     K +  ++ IS S   LL L+ND+LD++ +++G M L   
Sbjct: 302 MNAIMGMTEIAQMNILN--TDKVNDCLKKISISGQHLLGLINDVLDMSKIESGKMTLRND 359

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           +  L ++L  V   +   +        + I +     F  D  RL Q F  ILSNA  F+
Sbjct: 360 SASLPEVLENVVSILQPMVKSREQSFSIRIRNLVHEDFYFDALRLRQCFINILSNATKFT 419

Query: 703 SKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGV 754
            +  ++ +          D    +F+  + G  I E+   ++F+ F         +  G 
Sbjct: 420 PEKGSITVDVEEEYTGDPDYSKLMFTFTDTGIGIKEEFLNNIFDSFTREKDGRVDKTEGS 479

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLG++I +  +++  G + + S     TT    +P K
Sbjct: 480 GLGMAITKKIVDIMNGTIEVKSKVGMGTTFIVTLPLK 516


>gi|75910979|ref|YP_325275.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704704|gb|ABA24380.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 680

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 151/385 (39%), Gaps = 28/385 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +     +           G+      G  K +NP ++++   +         + ++   
Sbjct: 146 AELRQSEERFRSLSTCSPIGIFETDTAGCCKYTNPRYQAICGLDATESLDKRWLESVHPE 205

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLT 541
                  S    +      S +   +++ G+L       ++    P+ +        + T
Sbjct: 206 DQERAIASWSTYIDQGGDYSDEFRFQTVDGSL-----RWVQVRSSPMLSGNGELLGHVGT 260

Query: 542 FVNVTDSVRAER------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             ++T   ++E             +    A+ +K+ F+  +S+ELR+PLT+++G++ +L+
Sbjct: 261 LEDITARKQSEEIRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILR 320

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             KL       ++ +E I  ++   + L+ DILD++ +  G ++LN S + L  ++    
Sbjct: 321 AKKLD--EKATARALEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLTTVVEAAL 378

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +++       ++ I    D  L     D  RL QI   +L+NA+ F+ K   V ++    
Sbjct: 379 EAVRPLADTKSMTINTALDYTLSPVSGDSARLQQIVWNLLTNAIKFTPKEGKVEIRLEGI 438

Query: 716 NG-------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
           +G            V + G  I  +    VF RF        R   G+GLGL+IV   + 
Sbjct: 439 SGGLSDDLTHAQIQVIDTGIGIEREFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVE 498

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           LH G +   S       T   R P 
Sbjct: 499 LHKGTILAESPGVGKGATFTVRFPL 523



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 93/283 (32%), Gaps = 45/283 (15%)

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             I    ++   +N +L  + E   +L     + I   D     ++ N  +  +  +D  
Sbjct: 132 QAIQRQAAQLAAINAELRQSEERFRSLSTCSPIGIFETDTAGCCKYTNPRYQAICGLDAT 191

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                   + +       +   ++    +W   I      S+  +  +   +G    V V
Sbjct: 192 ESLDKRWLESV-------HPEDQERAIASWSTYIDQGGDYSD--EFRFQTVDGSLRWVQV 242

Query: 405 TSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQ-----GETIDHL-SEGVAVFG 451
            S+P         G +   E++T +   E     +++ Q      E  + +  E +AV  
Sbjct: 243 RSSPMLSGNGELLGHVGTLEDITARKQSEEIRAQVIREQTARQEAEAANRMKDEFLAVLS 302

Query: 452 PDGRIKLSN-------------------PAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            + R  L++                    A  ++ +   +++     I +++        
Sbjct: 303 HELRTPLTSMLGWSKILRAKKLDEKATARALEAIERNANSQVQLIEDILDVSRIIRGQLR 362

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            +        ++ +  +  + L  T  +  ++ L+Y++ P+  
Sbjct: 363 LNLSPVNLTTVVEAALEAVRPLADTKSMTINTALDYTLSPVSG 405


>gi|298247450|ref|ZP_06971255.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550109|gb|EFH83975.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 648

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/502 (20%), Positives = 196/502 (39%), Gaps = 42/502 (8%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
             AI I D    + F N    +L+      +    ++  L        + P+        
Sbjct: 164 ADAILIRDPVSRILFWNHGAEQLYGWSEQEVLGRITHSLL------ETRFPQSQAATDEA 217

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRG---GTIWMFENLTVQVDLETK 428
                 ++   TH       +G+T+ V          +G     + +  ++T +   E  
Sbjct: 218 LEQKGAWEGELTHTS----RDGRTVVVESRQALIRDDQGKPQAILEVNRDITERRGQEQH 273

Query: 429 YNTL----VKVQGETIDHLSEGV-AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
                     +    +D LS GV  V G D R+  +N +   +W T+   L     +   
Sbjct: 274 SQGEKPGSNPLFLRILDSLSCGVFLVTGADARLLFANRSAHQVWGTQWPFLQ---PLIEF 330

Query: 484 AATCSRYYNESDGWDLFAAIITSFD-----DERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             T       + G       + +F      +    LQ  +       L   I   P    
Sbjct: 331 LRTHDITILNAQGQPYAPDEMATFRAFKKGEHVHGLQSIVSRHDGKRLPILIYAEPFE-- 388

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS- 597
           +   + +  S RA   + +   A+++A+ +K+ FV+ V++EL++PL  +  + DLL+   
Sbjct: 389 LPANMGLPASERAVLLMYQDITAIKEAEYLKDEFVEIVAHELQNPLNTLASYADLLQRDI 448

Query: 598 ---KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               + +L   Q + +  I+ S++ L +L  D+LD+  + AG + LN  ++ +  L+ +V
Sbjct: 449 KAENIPALTPHQQKAIAAITESTSSLSSLTEDLLDVTRLQAGRLVLNLQSVNIVPLIQQV 508

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +      + I  +  S+  L     D  RL QI   I+ NA+ +S +G  +++    
Sbjct: 509 IARLQATTSRHQIEFQASSETMLAHV--DPARLEQIMHNIIDNAIKYSPEGGPILMAFKE 566

Query: 715 DNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           +         V++ G  IP+     +F RF+   +   R+  G+GLGL +    I L GG
Sbjct: 567 EPEQQRILGKVQDQGIGIPKQQHGRIFGRFMRADNARARQIPGIGLGLYLCHELIELMGG 626

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            +S  S +   +T     P  E
Sbjct: 627 SISFDSEEGQGSTFYVTFPVGE 648


>gi|87310985|ref|ZP_01093110.1| two-component sensor histidine kinase [Blastopirellula marina DSM
            3645]
 gi|87286275|gb|EAQ78184.1| two-component sensor histidine kinase [Blastopirellula marina DSM
            3645]
          Length = 1474

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 127/745 (17%), Positives = 272/745 (36%), Gaps = 114/745 (15%)

Query: 133  KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA-FLRILSLDGIYSELAETTLKCK----- 186
             LR+   +F           + IEGRV G  A F R    D I S+LA            
Sbjct: 608  ALREGMVAF-------AGYPLTIEGRVIGVLATFARHELSDAILSDLAPLADAIAQYVVR 660

Query: 187  --------KLSNHIS----VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
                    +L+        +++ +  ++  LV+  D      +AN +     +  G  ++
Sbjct: 661  KRGEQVLERLTAETERQRRLYRTILSTIPDLVYVFDLQHRFTYANDA---LLKMWGKTWE 717

Query: 235  KAIGES------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
            + IG+            E   + +    A  ++    V  +     + Y  + +     +
Sbjct: 718  ETIGKDCFELGYEPWHAELHGREIDQVVATHESIRGEVPYIGAHGRRVYDYIFLPVFGAD 777

Query: 289  ------AGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIF--DQNRYLQFHNRSFVEL 338
                  AG   D++      + +      L  L  A+   ++    +  + + N  + + 
Sbjct: 778  GEVEAVAGTTRDITDLKETEEAIRENEARLRQLADAMPHIVWSAGPDGEVDYFNNRWHQF 837

Query: 339  WEIDLAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
               +            L  + L +     ++         I   +     + + W L   
Sbjct: 838  TNFERGADDDRNWEHLLPPDDLTAFRATWDEAVRSGTPCEIEHRFFDQAKNSNRWFLT-- 895

Query: 398  QTLHVIVTSNPRGGTIWMF---ENL--------------------TVQVDLETKYNTLVK 434
                 +   +  GG +  F    ++                    T  +D ET +  L +
Sbjct: 896  ---RAVPVRDASGGVVRWFVSSTDIQRQKRTEQINRFLADASACLTANLDYETTFKELAR 952

Query: 435  VQ------GETIDHLSEG-----VAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            V          +D L +      VA+   D  +I+LSN          +++   G  +RN
Sbjct: 953  VAVPYFSDWCAVDLLDDNGQPRRVALMHQDPAKIELSNRMHALHPPQRDDKFGIGNVLRN 1012

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS------------DSVLEYSI 530
              +       +         + T+ D+E+  +   L+L S              VL + +
Sbjct: 1013 GTSELWEVLTDEGL------VATARDNEQLQILRALQLKSYIGVPLISRGKTIGVLTFCM 1066

Query: 531  IP---LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                 L + + +    +V+         +   + LR+AD  K+ F+  +++ELR+PL  I
Sbjct: 1067 AESGRLFDQEALRAAEDVSRRAAVAFENSVLYQQLREADRRKDEFLAMLAHELRNPLAPI 1126

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
                D+L+       + + +Q ++ +      L+ LV+D+LD++ +  G ++L      L
Sbjct: 1127 RSGIDILEID-----SPQDAQVLDAMKDQVEHLVRLVDDLLDVSRIMRGKVELRPEVASL 1181

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            + ++    Q++     E + +++V    +      D  R++Q+ S +L+NA  ++  G  
Sbjct: 1182 SAIVERAVQAVQWLFDEKDHQLEVELPAESIPIRVDPVRMVQVVSNLLNNAAKYTDPGGH 1241

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
            + L   R +G     V ++G  I  ++   VF+ F  ++      + G+G+GL++V + +
Sbjct: 1242 IQLFVDRVDGKAQIRVSDDGIGIEPELTPHVFDLFTQSSRALDRAQGGLGIGLTLVRNLV 1301

Query: 766  NLHGGHVSISSSD-EGVTTINCRIP 789
             +H G V++ S+     +     +P
Sbjct: 1302 EMHHGAVAVKSNGAGKGSQFIVELP 1326



 Score = 58.0 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 96/309 (31%), Gaps = 18/309 (5%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            + ++ V+ +         V +E+   ++L     I+ ++  A+   D +  +   N   
Sbjct: 93  LFFVIGVMIAIVNEAKRRAVLREVKRREELRL---IMSSIGDAVITTDVDGKITGLNPVA 149

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF--SVYKSSETHKDTWH 393
            EL +   A     P         + +    + +  +   E +   +   S    K    
Sbjct: 150 EELTDWTTAEAIGRPLTQVFRLVHQHSRITIDNVALRAAAEEVTVGAATDSILIAKSGRE 209

Query: 394 LPNG-QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           LP    T  +   S    G + +F ++T +   E K  +  +     +   +  V    P
Sbjct: 210 LPVEDSTSPIRDRSGAIIGAVLVFRDVTSRRRTEQKLQSSEERFRALVKATATIVWTTAP 269

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +G+I   +P +R+      ++      +  +       + +          + + D    
Sbjct: 270 NGQIIEDSPTWRAFTGQTFDQWKGTGWLDAV-------HPDDREHTFECWRVATADHSAY 322

Query: 513 SLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
             +  L              +P+ NA   +      +    +   T +     +  EI+ 
Sbjct: 323 QCEYRLRRSDGEYRWTSVRGVPILNADGSVREWVGMNVDITDERATAEK---VRDSEIRY 379

Query: 571 SFVQHVSYE 579
             V   + +
Sbjct: 380 RLVSEAAND 388



 Score = 42.2 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 48/436 (11%), Positives = 125/436 (28%), Gaps = 60/436 (13%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSN--HISVFKVLFDSLDFLVWHRDQAGDILW 217
           +G    + +  + G+   +     +   L         +++  S+   V   D  G I  
Sbjct: 85  AGDLLRVALFFVIGVMIAIVNEAKRRAVLREVKRREELRLIMSSIGDAVITTDVDGKITG 144

Query: 218 ANISYKKNTE-TEGIVFQKAIGESRKLFKEEIKK-----RMISSSALEKNFCETVSTLEH 271
            N   ++ T+ T      + + +  +L  +  +       + +++        T S L  
Sbjct: 145 LNPVAEELTDWTTAEAIGRPLTQVFRLVHQHSRITIDNVALRAAAEEVTVGAATDSILIA 204

Query: 272 GNNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAI 321
            + +   +    +          G   +  DV+       +L  + E    L    A  +
Sbjct: 205 KSGRELPVEDSTSPIRDRSGAIIGAVLVFRDVTSRRRTEQKLQSSEERFRALVKATATIV 264

Query: 322 FD--QNRYLQFHNRSFVELWE------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +    N  +   + ++               +L     +D              +  ++ 
Sbjct: 265 WTTAPNGQIIEDSPTWRAFTGQTFDQWKGTGWLDAVHPDDR-------------EHTFEC 311

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGT---IWMFENLTVQVDLE 426
           W+  + +   S+   +      +G+     V   P     G     + M  ++T +    
Sbjct: 312 WR--VATADHSAYQCEYRLRRSDGEYRWTSVRGVPILNADGSVREWVGMNVDITDERATA 369

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-------RSLWKTEENRLSPGTH 479
            K            +  ++ +  +  +      N          +S   T+ +    G H
Sbjct: 370 EKVRDSEIRYRLVSEAANDAIWDWDLNTNKVRWNEGLLRNFGYTKSQVGTDASWWKAGIH 429

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             +         +  D      A    F  +R             ++     P+   + +
Sbjct: 430 PDDRLRVVDGIQHAIDHGQERWADEYRF--QRADGDYAYVFDRGRIVRDQNTPV---RMV 484

Query: 540 LTFVNVTDSVRAERAL 555
            + +++T+  R E+ L
Sbjct: 485 GSLLDLTERKRNEQIL 500


>gi|320157394|ref|YP_004189773.1| aerobic respiration control sensor protein arcB [Vibrio vulnificus
           MO6-24/O]
 gi|319932706|gb|ADV87570.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus
           MO6-24/O]
          Length = 780

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 153/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +     +G     N A   L   +E++L   +  
Sbjct: 144 ERTQVELAERTAL--LRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   ++D          +++   +   G          E   +P  +     
Sbjct: 202 DVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDG-----RKHYFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++  
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTR-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q +Y++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   A 
Sbjct: 313 -LTDEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISAL 371

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +    +L  +   D  RL Q+   ++SNAM F+ +G  V  + +  +   
Sbjct: 372 MAEQKGLRFDLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTVSSEVEEDF 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              I  V++ G  IPE     +F  +             G G+GL++    IN+  G ++
Sbjct: 432 ATIIIEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDIT 491

Query: 774 ISSSDEGVTTINCRI 788
           +SS +   +T    I
Sbjct: 492 VSSEEGFGSTFTISI 506



 Score = 44.5 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 56/149 (37%), Gaps = 15/149 (10%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           +  + +E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ T   G
Sbjct: 133 MKDLENEVFQRERTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEELT---G 189

Query: 231 IVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVL- 283
               + +G S   ++ +E+ ++++ +             E       G    +++ +V  
Sbjct: 190 KKEHQLVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDGRKHYFELRKVPF 249

Query: 284 -----NSFGEAGIAIDVSKEITVNDQLTH 307
                   G  G   D+++     + L  
Sbjct: 250 YSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|209363989|ref|YP_001424551.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|207081922|gb|ABS77049.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 683

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/486 (22%), Positives = 209/486 (43%), Gaps = 32/486 (6%)

Query: 329 QFHNRSFVELWEIDLAFLATNPS------NDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            + + +F  ++ I    L  NP+        E  + LR      +  N K     +   Y
Sbjct: 56  VYVSPAFENIFGISRQTLYANPNKWMNAVITEDRDRLRHLIMEWQVKNKKGAAYTVD--Y 113

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +  + + +  H  N  +  V       G    + ++++ +     +++  V      ++ 
Sbjct: 114 RIIDAYGEM-HWINETSYPVYEDDQCLGY-AGVVKDVSSEKLRVKEFDNAVHYFRHFVER 171

Query: 443 LSEGVAVFGPDG-RIKLSNPAFRSLWKT-EENRLSPGTHIRN--IAATCSRYYNESDGWD 498
           +S    V G  G +    +P +  +W    E+         +  +    S      + ++
Sbjct: 172 VSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNPKSWIDYVLPEDISNGKVNVNFYE 231

Query: 499 LFAAIIT-----SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             A   T      F    +   G +  + D+               +      D++R E+
Sbjct: 232 TAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIMENGKLVGFAGIAEDVTNDALR-EK 290

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+ +Q   ++ I
Sbjct: 291 ELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLSDEQQGQIDVI 347

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H+  I++K   
Sbjct: 348 SQTGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFDY 407

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
              + S  + D +R+ Q+   +LSNA+ F+ KG  V L A     D       F+VK+ G
Sbjct: 408 PENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQLTANCLKKDHKKMTLCFTVKDTG 466

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +    S+FNRF    + ++ +  GVGLGLSIV+  +   GG +S++S     +   
Sbjct: 467 IGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFT 526

Query: 786 CRIPSK 791
           C IP +
Sbjct: 527 CIIPFR 532


>gi|83814196|ref|YP_446585.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83755590|gb|ABC43703.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 441

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 116/245 (47%), Gaps = 2/245 (0%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R    L E  E LR+AD ++   V +VS++LRSP+ +I G+ + +          ++ +
Sbjct: 190 NRMADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVHMKDGDLPPQERQR 249

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           YV+    ++  L  LVN++ +L+ ++   ++       + +L+ +V      +  E  + 
Sbjct: 250 YVKTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVD 309

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++     +     AD   + +  S ++ NA+ ++ +G  V ++   + G+   +V + G 
Sbjct: 310 LRADLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNEQGEVCVAVADTGP 369

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPED    +F RF          R G GLGL+I ++ + LHG  + + S+    T+   
Sbjct: 370 GIPEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTSFRF 429

Query: 787 RIPSK 791
            +P +
Sbjct: 430 CLPVE 434


>gi|317027783|ref|XP_001399984.2| sensor histidine kinase/response regulator [Aspergillus niger CBS
            513.88]
          Length = 2354

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+  +IG ++LLK +K   L+ +Q +YV
Sbjct: 1888 AEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGTK---LDREQDEYV 1944

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + + + ++EV +++     +  +   
Sbjct: 1945 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGLETI 2004

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---DFIFSVK 724
               D      V   D  RL QIF  +LSN+  F+ KGS TV  K +R+         SV 
Sbjct: 2005 EDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLECSVS 2064

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  I E+    +F  F    +       G GLGLSI ++ I  + GG + + S+    
Sbjct: 2065 DTGIGISEEQKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTSGVG 2124

Query: 782  TTINCRI 788
            TT+   +
Sbjct: 2125 TTVTFHL 2131


>gi|254412795|ref|ZP_05026568.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180530|gb|EDX75521.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 797

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/677 (16%), Positives = 244/677 (36%), Gaps = 75/677 (11%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK----------- 224
            ++ E     K L    ++ + + DS ++ +      G I   N + +K           
Sbjct: 131 QDITERKQAEKALLELATLNQAILDSANYTIISTTVDGTISTFNRAAEKWLGYSASDVVG 190

Query: 225 -NTETEGIVFQKAIGESRKLFKE-----EIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
             T       ++ +  S +L +E     +       + A      E   T    +   + 
Sbjct: 191 KTTPALFHDPEEIVERSHELCQELNTPIQPGFEAFVAKARRGEIDEREWTYIRHDGSRFP 250

Query: 279 IVRVLNS--------FGEAGIAIDV----SKEITVNDQLTHTYEILHNLTVAIAIFDQ-N 325
           ++  + +         G  GI  D+      E ++ D    +  I   +   + ++D   
Sbjct: 251 VLLSITALYNSDNQIVGFLGIGSDIIIRKQAEQSLRDSQHFSQRIADTVPGILYLYDVIE 310

Query: 326 RYLQFHNRSFVELW--------EIDLAFLA--TNPSN-DELLEFLRSANKLPEQLNWKTW 374
           +   + NRS VEL         +I   F++   +P +   +LE  +    L E       
Sbjct: 311 QRNVYANRSTVELLGYTPQDIQDIGTDFMSHLVHPEDIPHILEHQKHLTTLTED------ 364

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
            +++   Y+    + +   L + +T+     +      + + E++T    +E       +
Sbjct: 365 -DHLTLEYRMKHANGEWRWLRSRETVFSRTVAGLPKLLLGIAEDITDYKRVEDVLRQTNE 423

Query: 435 VQGETID------------------HLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLS 475
              + ++                  +   GV  +    R++  +     +   + E  L 
Sbjct: 424 DLEQRVEQRTADLENAHKQLRFHVENSPLGVIEWDSQFRVQGWSKQAERILGWKAEEVLG 483

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +           +      +L          E ++L     +L        +    N
Sbjct: 484 KQFNDWQFVYPDDFEFVHQKALNLLNPESPPEIIENRNLTKDGNVLYCQWYNSVLFDESN 543

Query: 536 A--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           A    +    + T+    E  L + N+ L+++++    F    S++LR PL  I  ++DL
Sbjct: 544 AVVSILSLVQDQTERKHDEEQLQQLNQQLQRSNQELEQFAYVASHDLREPLRKIRSYSDL 603

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L     G L+ +  +Y+ YI+ S   +  L+ D+L  + V     +L      L ++L +
Sbjct: 604 LVKRYQGQLDERADKYIGYITDSVIRMQALITDLLTYSRVSRN--ELVLEPTDLGEILQQ 661

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKA 712
               ++  + EN     +I+   L    A+  ++ Q+   +++NA+ F   +   + +KA
Sbjct: 662 TLTDLSPAIEENQ---AIINTTHLPIVQANSLQIGQVLQNLIANAIKFRREQPPQIDIKA 718

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +  +  S+++NG  I       +F  F    +R +  G G+GL+I +  +  HGG +
Sbjct: 719 DCQDDFWQISIQDNGIGIDPSYSDRIFAIFQRLHYREEYPGTGIGLAICQKIVERHGGKI 778

Query: 773 SISSSDEGVTTINCRIP 789
            + S     +T    +P
Sbjct: 779 WVESELGQGSTFYFTLP 795



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/447 (14%), Positives = 146/447 (32%), Gaps = 42/447 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
           +L    L     +   + D +  L+   D  G I++ N + ++ T       Q       
Sbjct: 10  SLPLNALKEQRELTAAMLDLIGALIVILDAQGRIVYFNHACEQLTGYLRQEVQGKYAWDL 69

Query: 242 KLFKEEIK--KRMISSSALE--KNFCETVSTLEHGNNKSYKIVRV--LNSFGEAGIAI-- 293
            +  E++   + +  +   +     CE+      G+ +    +    LN  G     I  
Sbjct: 70  LILPEDVASIQAIFDNLIPDNFPQPCESCWVTRDGDWRWIAWMDTVCLNEQGTVEYVIAT 129

Query: 294 --DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             D+++       L         IL +    I     +  +   NR+  +      + + 
Sbjct: 130 GQDITERKQAEKALLELATLNQAILDSANYTIISTTVDGTISTFNRAAEKWLGYSASDVV 189

Query: 348 TNPS---NDELLEFLRSANKLPEQLNWKTWK--ENIFSVYKSSETHKDTWH--LPNGQTL 400
              +     +  E +  +++L ++LN       E   +  +  E  +  W     +G   
Sbjct: 190 GKTTPALFHDPEEIVERSHELCQELNTPIQPGFEAFVAKARRGEIDEREWTYIRHDGSRF 249

Query: 401 HVIVTS-------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-P 452
            V+++        N   G + +  ++ ++   E              D +   + ++   
Sbjct: 250 PVLLSITALYNSDNQIVGFLGIGSDIIIRKQAEQSLRDSQHFSQRIADTVPGILYLYDVI 309

Query: 453 DGRIKLSNPAFRSLWKTEENRLS-----PGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           + R   +N +   L       +        +H+ +         ++     L      + 
Sbjct: 310 EQRNVYANRSTVELLGYTPQDIQDIGTDFMSHLVHPEDIPHILEHQKHLTTLTEDDHLTL 369

Query: 508 DDERKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           +   K   G    L   ++V   ++  LP    +    ++TD  R E  L + NE L + 
Sbjct: 370 EYRMKHANGEWRWLRSRETVFSRTVAGLPKL-LLGIAEDITDYKRVEDVLRQTNEDLEQR 428

Query: 566 DEIKNSFVQHVSYELR-----SPLTNI 587
            E + + +++   +LR     SPL  I
Sbjct: 429 VEQRTADLENAHKQLRFHVENSPLGVI 455


>gi|91776115|ref|YP_545871.1| periplasmic sensor hybrid histidine kinase [Methylobacillus
           flagellatus KT]
 gi|91710102|gb|ABE50030.1| periplasmic sensor hybrid histidine kinase [Methylobacillus
           flagellatus KT]
          Length = 1146

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 117/257 (45%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    + +  L    +   +A++ K+ ++  +S+ELR+PL +I+G+  LL
Sbjct: 659 NRQTNLLQREIVLHKQTDAELQRARQVAEQANQAKSRYITGISHELRTPLNSILGYAQLL 718

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 S+   + Q +  I  S   LL+L+   LD+A +++G +  +   +   + + ++
Sbjct: 719 DNDP--SIPENRRQSIRVIRRSGEHLLSLIEGTLDIARIESGKLTFDLRLVRFPEFIQQL 776

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     I  K    G+L   V  D++RL QI   IL NA+ F+  G  V  K  
Sbjct: 777 VSMFELQARNKGIDFKYELRGELPKVVRIDQKRLSQILINILGNAVKFTRHGG-VSFKLR 835

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
                   S+++ G  I  +  + VF  F   +   +    G GLGL+I +    L GG 
Sbjct: 836 YAREMLHISIEDTGPGIAPEEIEKVFEPFARGSAAAKSNIGGTGLGLTISKMLTELMGGQ 895

Query: 772 VSISSSDEGVTTINCRI 788
           +++ S+    +  N R+
Sbjct: 896 LTVRSTLGQGSQFNIRL 912


>gi|168819602|ref|ZP_02831602.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205343409|gb|EDZ30173.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320087774|emb|CBY97538.1| sensor histidine kinase FexB [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 778

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 17/292 (5%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSF 572
           L+     L  + +E                +  D +RA+ R L++  EA  KA  I++ F
Sbjct: 142 LEERANHLEKAQVELRKYATDLEAAKRQAEDQADLLRAQARELSKAREAAEKAAAIRSEF 201

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  ++G  +LL  ++LG    +Q +YV+ I  S   LL L+N+ILDL+ 
Sbjct: 202 LANMSHEIRTPMNGVVGMAELLGHTELG---EEQREYVDTIRNSGEALLGLINNILDLSK 258

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIF 691
           ++AG M L+        +L +    +  K  E  I +   ++ ++ S  + D  RL Q+ 
Sbjct: 259 LEAGKMILDAIEFDPRSVLEDTVDLLGAKADEKLIELTGFAESQVPSKLIGDPSRLRQVL 318

Query: 692 SKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
             ++ NA+ F+    TV L+      +       FSV++ G  I E+  K +F  F    
Sbjct: 319 LNLVGNALKFT-ANGTVRLRVTLMNTSSSEAVLRFSVRDTGVGIDEEQQKRLFKPFSQAE 377

Query: 747 H--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI----NCRIPSKE 792
                +  G GLGLSI +      GG + + S  +  +        ++P K+
Sbjct: 378 GAVARKYGGTGLGLSISQQIARAMGGQILLESERDKGSEFSFALRFKLPEKD 429


>gi|157148781|ref|YP_001456100.1| aerobic respiration control sensor protein ArcB [Citrobacter koseri
           ATCC BAA-895]
 gi|157085986|gb|ABV15664.1| hypothetical protein CKO_04614 [Citrobacter koseri ATCC BAA-895]
          Length = 778

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 GLQAQQKGLRFVLDPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 DFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D + F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DVLHFDVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +     
Sbjct: 489 VSSQPGKGSVFTLT 502



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  + + +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQSTFEQLKVEIKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q    +   ++  E  +++I +   EK F   VS           G    ++I
Sbjct: 189 GKS--EKQLVHLKPADVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|77362202|ref|YP_341776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis TAC125]
 gi|76877113|emb|CAI89330.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis TAC125]
          Length = 1585

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/713 (17%), Positives = 255/713 (35%), Gaps = 121/713 (16%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            + G + ++ E      +L N    F  L  ++  +++        +W  +   K T+   
Sbjct: 603  MIGTHLDITEQKATELELQNSRDQFASLVGNIPGIIYRCKYDK--VWTMLYMSKQTKELT 660

Query: 231  IVFQKAIGESRKL---------FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
                +AI E+++L          +++I+K +I        +      +  GN      VR
Sbjct: 661  GYDAEAILENKQLSYLEIIYSDDRDDIEKTIIKCIDEHTPWSVEYRIITQGNE-----VR 715

Query: 282  VLNSFGEA------------GIAIDVSKEITVNDQLTHTYEILHNLT----VAIAIFDQN 325
             +N  G+A            G  +D+++      ++T    +L +++    +     D  
Sbjct: 716  WVNEKGQAIYDTDGNVLYLDGFILDITERYQAQLKITRQQSLLESMSKQGQIGAWEIDLK 775

Query: 326  RYLQFHNRSFVELWEIDLAF---LATNPSNDELLEFLRSANKLPEQL--NWKTWKENIFS 380
                + +     + E+  ++   +AT  ++ +        N L E    + K+W   +  
Sbjct: 776  AQTLYWSDEVRAIHEVPQSYSPDIATAINHYKEGYHRDKINALFESAISSGKSWNIELII 835

Query: 381  VYKSSETHKDTW-------HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET------ 427
            V   + T ++ W          NGQ + V  +          F+++     LE       
Sbjct: 836  V---TYTGQERWVKSIGQSEFENGQCIRVFGS----------FQSIDAHKRLELESEKAN 882

Query: 428  KYNTLVKVQG----------------------ETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            +YN  + +                        E +D     + +F     + + +    +
Sbjct: 883  RYNKSLAMLTVAPEVQSSDVAEVKKLAVKSMCEVLDVQRASIWIFNEQRDLMICHS--LN 940

Query: 466  LWKTEENRLSPGTHIRNIAA-----------TCSRYYNESDGWDLFAA------IITSFD 508
            +     +  +      +  A                YN     D          I +  D
Sbjct: 941  IQGQGVDCCNAQLSAEDYPAYYEAIYKQNLIAIDDVYNHPATVDFIEHYAKPNNIKSMLD 1000

Query: 509  DERKSLQGTLELL-SDSVLEYSIIPLPN-------AQTMLTFVNVTDSVRAERALTEKNE 560
                +  G L +L +++V E+              A  + + +      +    L     
Sbjct: 1001 AVITTGDGNLGILCAETVGEFRQWTQSEETYLRSLATLVGSTLVSQRRKQTAEELKIALV 1060

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
              ++A   K+ F+  +S+E+R+P+  ++G  +L++   L  L       V     S+  L
Sbjct: 1061 LAKEAGVAKSQFLATMSHEIRTPMNGVLGMLELIQ---LEQLPKPIETKVAIAKTSAHSL 1117

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGS 679
            L ++NDILD +  +AG ++L        DL+ EV  + A       I I +     +   
Sbjct: 1118 LGVINDILDFSKAEAGKIELESINFNARDLIGEVAAAQALTAQNKGIEIILDLVALEPSQ 1177

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPEDMCK 736
               D  R+ Q+ + +LSNA+ F+++G  V+   ++          SVK++G  I ++  +
Sbjct: 1178 LSGDPGRIRQVLTNLLSNAVKFTNEGEVVVSASIERIEAQLMLQVSVKDSGIGISKEKQQ 1237

Query: 737  SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +F  F+       R   G GLGL+I +    L GG ++I S+    +     
Sbjct: 1238 QLFAPFMQVDASTTREYGGTGLGLAISKQLCELMGGAITIKSNAGQGSEFIVT 1290



 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 114/387 (29%), Gaps = 55/387 (14%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVF--KVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
             L   Y + AE  +  + L+   S      +  +        D  G I + N  +    
Sbjct: 349 QQLTEFYKQGAELQVVLRHLAEQKSALDEHAIVAA-------TDLKGTITFVNKKF---C 398

Query: 227 ETEGIVFQKAIGESRKLFKE-----EIKKRMISSSALEKNFCETV-STLEHGNNKSYKIV 280
           E  G    + IG++ ++        +  K M  +    K +   + +  + GN       
Sbjct: 399 EISGYDEHELIGKNHRILNSGTHPKQFFKEMYQTLKQGKVWHGKICNKAKQGNLYWVDTT 458

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFD--QNRYLQF 330
                           I  D++       +L      L  +  T A+ I+D   +     
Sbjct: 459 IAPFLDENAKPQSYIAIRTDLTALKLQEIELEEHKAQLQLVIDTTAVGIWDWYIDTGKVT 518

Query: 331 HNRSFVELWEIDLAFLA----------TNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
            N  + E+    L  L            +P +  + E   +A+   E   +        +
Sbjct: 519 FNHRWAEIIGYTLDELGPAVIGTWYKYAHPDDLIVSEQKLNAHFSGETNYYVN-----EA 573

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
             K  + H   W L   + +      +P+   I    ++T Q   E +           +
Sbjct: 574 RMKHKQGHW-VWILDTAKVVEWNDDGSPK-RMIGTHLDITEQKATELELQNSRDQFASLV 631

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE---SDGW 497
            ++  G+       ++      +  L+ +++ +   G     I       Y E   SD  
Sbjct: 632 GNIP-GIIYRCKYDKV------WTMLYMSKQTKELTGYDAEAILENKQLSYLEIIYSDDR 684

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDS 524
           D     I    DE         +++  
Sbjct: 685 DDIEKTIIKCIDEHTPWSVEYRIITQG 711


>gi|89097664|ref|ZP_01170552.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
 gi|89087523|gb|EAR66636.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
          Length = 956

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 169/382 (44%), Gaps = 28/382 (7%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +N+++    E +     K+  + ++ + EG+ +    G I  +N     ++        
Sbjct: 446 LDNISLYSQSEEER----KLNKDILNTVQEGIQMVSRSGAILQANRQLEEMFTCPGAAGR 501

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLP 534
                  I    +   N+ +  D F A + +             + SDS  +E  I  + 
Sbjct: 502 LENLPWEI--WSAEMANKVEQPDEFLAFLQNA------------VHSDSCEMESIIYQMK 547

Query: 535 NAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               ++           ER     +        + D++K+ FV  VS+ELR+PL +I+GF
Sbjct: 548 QTGQVIKMYCEGLGQEDERIGTVLVHRDITKEFEVDQMKSEFVSTVSHELRTPLASILGF 607

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+L+   +L     KQ +Y+  I   +  L +L+ND LD+  ++AG        + L  +
Sbjct: 608 TELMLNRELKP--DKQKKYLTTIYNEARRLTSLINDFLDVQRMEAGKQTYEKKYLRLLPI 665

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + +V +        + I+I   S G     + D+ ++ Q+F+ ++SNA+ +S  G  +I+
Sbjct: 666 IEQVIEKQQINTDIHKIKIDDRSIGN-DVILGDKSKVEQVFTNLISNAVKYSPGGGDIII 724

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
           +  +++   +  V++ G  IPED    +F +F    +  +RR  G GLGLSIV+  +  H
Sbjct: 725 RLYQEDKSVLAEVEDKGLGIPEDALDKLFTKFYRVDNSDRRRIGGTGLGLSIVQEIMKAH 784

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
            G +S++SS    +      P 
Sbjct: 785 SGSISVASSYGKGSIFTLSFPL 806


>gi|229528639|ref|ZP_04418029.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           12129(1)]
 gi|229332413|gb|EEN97899.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           12129(1)]
 gi|327484870|gb|AEA79277.1| Aerobic respiration control sensor protein arcB [Vibrio cholerae
           LMA3894-4]
          Length = 785

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|88606773|ref|YP_505514.1| sensor histidine kinase [Anaplasma phagocytophilum HZ]
 gi|88597836|gb|ABD43306.1| Sensor histidine kinase PleC [Anaplasma phagocytophilum HZ]
          Length = 470

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 3/245 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
           A   L EK E   K    K+ F+ +VS+ELR+PL +IIGF+++++   LG L N++  +Y
Sbjct: 217 ANLELQEKKENAEKESVSKSQFLANVSHELRTPLNSIIGFSEIVQRESLGPLGNAQYKEY 276

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ +   LL+L+NDILD +  +A  + +      L  +++     +  K  E  + +
Sbjct: 277 IKEINHAGVHLLSLINDILDFSKAEANKLSVELVKCDLRKIVDSCFNMMLPKAQEAKVEL 336

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           K          + D +R+ Q+   IL+N+M F+ +   V L   +   + +  + +NG  
Sbjct: 337 KRDMPESQIVLMVDARRMKQVILNILTNSMKFTPEKGFVRLSVEKKQEEVVIEICDNGIG 396

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I +     V + F      H  +  G GLGL + +  + L  G  SI       T +   
Sbjct: 397 IAQQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMNGTFSIKGEANLGTVVTLS 456

Query: 788 IPSKE 792
            P  E
Sbjct: 457 FPCVE 461


>gi|83646428|ref|YP_434863.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634471|gb|ABC30438.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 796

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 7/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    +    A++ K+ F+ ++S+E+R+PL  +IG    +     G L+ +Q    + 
Sbjct: 62  RQLELARDEAMAANKAKSLFIANMSHEIRTPLNGVIGMLQAMMQ---GDLSREQKARAKT 118

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S  +LL ++ND+LD + ++A  + L      L  LL+     + ++  +  + + + 
Sbjct: 119 ALTSGKLLLTVINDLLDFSKLEADKVNLERIPFSLGRLLDSCFPVVCSQASDKGLTLTLT 178

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               L    + D  RL QI   +LSNA+ F+ +G  V L         +F V + G  IP
Sbjct: 179 LAAHLPDQIMGDPTRLKQIICNLLSNAVKFTKRGE-VSLYCYPVEDRLVFGVADTGVGIP 237

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D  + +F  F      H  +  G GLGLSI    +   GG + + S           +P
Sbjct: 238 ADRQQQIFEPFSQADDSHTRRYGGTGLGLSISSRLVEAMGGRLKVRSEPGVGADFYFALP 297


>gi|124268043|ref|YP_001022047.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260818|gb|ABM95812.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 1001

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 112/240 (46%), Gaps = 18/240 (7%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K+ F+  +S+E+R+P+  ++G T+LL  +   +L+S+Q ++ + +  S   LL ++N
Sbjct: 336 SQAKSQFMATMSHEIRTPMNGVLGMTELLLGT---ALDSRQRRFAQAVYRSGESLLEIIN 392

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684
           DILD + ++AG ++L  +      L+ +V + +A +  E  + +      G   +   D 
Sbjct: 393 DILDFSKIEAGKLELAPADFTPRALVEDVLELLAPRAQERGLELSFREEPGLPPALHGDA 452

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------------DFIFSVKNNGSSIPE 732
            RL Q+ + +++NA+ F+  G  V+     +                   V++ G  IP 
Sbjct: 453 LRLRQVLTNLVANAIKFTEHGEVVVEMRRVEPTAAETALATGDRLWVELCVRDTGIGIPP 512

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F  F   +     +  G GLGL+I    + L  G +++ S     +    R+P 
Sbjct: 513 EALSRLFIAFSQASSGMARRYGGTGLGLAISRQLVELMSGSITVRSQPGVGSRFCVRLPL 572


>gi|323691918|ref|ZP_08106170.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum
           WAL-14673]
 gi|323504034|gb|EGB19844.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum
           WAL-14673]
          Length = 935

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 144/342 (42%), Gaps = 10/342 (2%)

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            +   N +   +  +    +     + +I        +E D   L    + S  D + SL
Sbjct: 448 NVVPVNLSANRMKISFAMPMPANPELLSIINKGINSLSEEDRISLLDHNLVSIGDAKVSL 507

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           +  +E  ++ +L  + I       ++    +         + +        ++ K+ F+ 
Sbjct: 508 KNFVE--TNPILSITAISAFLLLVIMVITVIASLRVKNAIMQKDVIRAEAENKAKSEFLS 565

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+E+R+P+  I+G T L+       +       +  + A+S  LL L+NDILD++ +D
Sbjct: 566 RMSHEIRTPMNAIVGTTALIAMK--DDIPESIKGNLAKLKATSQYLLGLINDILDMSRID 623

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            G++ +      L  LL+E+   + ++     I +   +  +      D  RL Q+   +
Sbjct: 624 NGMLSIAEEDFSLQQLLDELCSMMQSQSKAREIALCCETGFRHSDLKGDAIRLKQVLMNL 683

Query: 695 LSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHR 748
           +SNA+ F+  G TV L             ++F V + G  I  +  + +F  FV   A+R
Sbjct: 684 VSNAIKFTPPGGTVHLTVEETAATDLQAVYLFKVTDTGIGIRAEDLERIFESFVQTGANR 743

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +G GLGL I ++ + L GG + + S     +  +  IP 
Sbjct: 744 MRSQGTGLGLPISQNIVQLMGGTLRVKSKINEGSEFSFSIPL 785


>gi|27377710|ref|NP_769239.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
 gi|27350855|dbj|BAC47864.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
          Length = 2095

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 139/303 (45%), Gaps = 18/303 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
                 E ++ Q  L+  +D  LE     L   + +       +  +A RAL EK   L  
Sbjct: 1361 QQLAGELQTQQRELQQTNDQ-LEQKAQQLAE-RNVEVERKNQEIEQARRALEEKATELAL 1418

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              + K+ F+ ++S+ELR+PL +I+     L  +  G+L++KQ ++   I  + T LLNL+
Sbjct: 1419 TSKYKSEFLANMSHELRTPLNSILILGQQLTDNPDGNLSAKQVEFARTIHGAGTDLLNLI 1478

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            +DILDL+ +++G + ++   I+  +LL  V +    +    N+  K+  D  L  S V D
Sbjct: 1479 SDILDLSKIESGTVTVDAEEILTANLLETVGRPFRHEAENRNLSFKIDVDPNLARSIVTD 1538

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNNGSSI 730
             +RL Q+   +LSNA  F+++G   +       G                F V + G  I
Sbjct: 1539 SKRLQQVLKNLLSNAFKFTAEGEVRLKVGGALGGWGTDHPVLNSAPAVISFEVSDTGIGI 1598

Query: 731  PEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            P +  K +F  F         +  G GLGL+I     +L GG + + S+    ++    +
Sbjct: 1599 PLEKQKLIFEAFQQADAGTSRKYGGTGLGLAISRELASLLGGEIHLRSAPGKGSSFTLYL 1658

Query: 789  PSK 791
            P K
Sbjct: 1659 PLK 1661


>gi|332706883|ref|ZP_08426944.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332354767|gb|EGJ34246.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 678

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/564 (15%), Positives = 211/564 (37%), Gaps = 71/564 (12%)

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSF 335
            R         +  ++++     ++L  + + L        +    +  +  +   N   
Sbjct: 123 SRAPLEATNTALEKEIAERKQTVEELLRSQQTLSLLVEQTPLGFIEWSLDGEVMQWNHVA 182

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS---VYKSSETHKDTW 392
            +++              ++  F   A++L +  +     + +      ++ S    + +
Sbjct: 183 EKIFG-----------YSKMEAFGHRAHQLIKPQSSVEQFQRVLQDCLNFQYSNCITENY 231

Query: 393 HLPNGQTLHVIVTSNP----RG---GTIWMFENLT------------------------- 420
           H  +G ++     + P     G   G + + +++T                         
Sbjct: 232 HPQDGSSIFCQWHNAPLIESDGTIIGVVSVVQDITKRKLEDDVLTQAYEELEQRILERTK 291

Query: 421 --------------VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                          +  +E++    +++    ++++   +A+F    R +  +  + S 
Sbjct: 292 QLAAANQVLKAEIRERRQVESELGNNLELLNRFLEYVPAAIAMFDQQMRYQFVSRNWYSE 351

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +   ++ +  G     +       + +     L        +D      G  + L   + 
Sbjct: 352 YNISDDNI-IGKSYYEVFPETPEGWKKIHQRCLEGYSAECEEDLFIRANGEQQWLKWEIG 410

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            +  I    +  +++   +T+   A+ AL   N+ L +++     F    S++L+ PL  
Sbjct: 411 PWVDIAGKISGIIMSTEVITERKEAQEALKRLNQDLSQSNRELEQFAYVASHDLQEPLRA 470

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I  +T LL      +L+++  +Y+ YI   +T +  L+ D+L  + V     +L  +   
Sbjct: 471 ISSYTQLLAKKYQSNLDAQADKYIHYIVDGATNMQQLIQDLLSFSRVGTHGKELAATDCE 530

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKG 705
           +  +LN V  ++   + E++    +++   L   + D  +L Q+   ++ NA+ F S + 
Sbjct: 531 V--VLNRVLDNLNVAIIESD---AIVTHDSLPVVMGDDIQLSQLLQNLIGNAIKFRSQEL 585

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             V + A     +FIFSV++NG  I  +  + +F  F     R +  G G+GL++ +  +
Sbjct: 586 PRVHISAELKAKEFIFSVRDNGIGIEPEYFERIFTIFQRLHTRREYPGTGIGLAVCKKIV 645

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             HGG + + S     TT    IP
Sbjct: 646 ERHGGKIWVESELGVGTTFYFSIP 669



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 26/180 (14%)

Query: 273 NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYL 328
             +  +  + L +  +   A ++ +   V  +L +  E+L+     +  AIA+FDQ    
Sbjct: 283 EQRILERTKQLAAANQVLKA-EIRERRQVESELGNNLELLNRFLEYVPAAIAMFDQQMRY 341

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK--SSE 386
           QF +R++   + I    +      +            PE    + WK+      +  S+E
Sbjct: 342 QFVSRNWYSEYNISDDNIIGKSYYEVF----------PETP--EGWKKIHQRCLEGYSAE 389

Query: 387 THKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             +D +   NG+   +     P         G I   E +T + + +     L +   ++
Sbjct: 390 CEEDLFIRANGEQQWLKWEIGPWVDIAGKISGIIMSTEVITERKEAQEALKRLNQDLSQS 449


>gi|317498208|ref|ZP_07956509.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894563|gb|EFV16744.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 939

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 168/403 (41%), Gaps = 31/403 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEE 471
           +    ++T    +E+  +  +     +++ L + +  +        L N  +       +
Sbjct: 258 MIFLRDITE-AKVESARHLQMAADNASMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQ 316

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-------LSDS 524
               P     +      + Y   +  +    +I   D+ RK L+   ++       L + 
Sbjct: 317 MIYKPLGFYHDFQMQVLKKYKTLEPLEAIDILIAP-DNIRKKLKNENDIYKFEYCSLDEK 375

Query: 525 VLEY-SIIPLPN-----AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQ 574
             +  S IPL        + +L  ++VT   +AE    +AL E   +   A+  K  F+ 
Sbjct: 376 TYKIASYIPLEWKNGKLEKVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLS 435

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+++R+P+  I+G T +           +  + +  I+ SS  LL L+N++LD+A ++
Sbjct: 436 NMSHDIRTPMNAIVGLTAI--AGANIESQDRVIECLSKITESSRHLLGLINEVLDMARIE 493

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSK 693
           +G M L      L+DL++ +       + E+     +  +  +  +   D  R+ Q+F  
Sbjct: 494 SGKMTLAQEDFNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVN 553

Query: 694 ILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           ++SNA+ ++  G  +              G + F++++NG  +  +  K +F+ F     
Sbjct: 554 LMSNAIKYTPDGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADD 613

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R  G GLG++I  + +NL  G + + S+    T I   I
Sbjct: 614 HRTTRVQGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 656


>gi|255011930|ref|ZP_05284056.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 543

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 160/389 (41%), Gaps = 11/389 (2%)

Query: 409 RGGTIWMFEN-----LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           +GG + ++E+     + V +    +  T   V    +         F  +  + + +P +
Sbjct: 154 QGGIVGIYESGRLIKMIVYLRNVLEERTQRHVLNIALSKTHIFSWSFDMERNLMVIDPRY 213

Query: 464 RSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLEL 520
                  T++  L+       +     +   ++    L   +  +    R +   G  E 
Sbjct: 214 FDYLKIPTQDYTLTMEQFSDLVHPDDRKVLFDALAGQLTGNLYEAPVPYRLRRGDGGWEW 273

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                     +     + +   ++       E  L +     +++D +K++F+ ++S+E+
Sbjct: 274 FEGQSTYVGQLSDLPFRIVGICMSTQRHKDIEDRLNDALRKAQRSDRLKSAFLANMSHEI 333

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+ LL + +         +Y   I  +  +L+ L++DILDL+ +++  M+ 
Sbjct: 334 RTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIEKNGQLLMFLISDILDLSKIESNTMEF 393

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N S   LN +  ++ +     +    + +      +  S  AD  RL Q+ + +++NA+ 
Sbjct: 394 NVSVFSLNKMFADIARMQRLNVKP-GVELIADLPAEDVSITADPVRLEQVVNNLINNAIK 452

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           F+S+GS  I    R   D    V++ G  + E++   VF RF         +G GLGL+I
Sbjct: 453 FTSRGSIRIGYRRRGEKDVELFVEDTGKGMSEEVIAHVFERFYKGDSF--VQGTGLGLAI 510

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++ +   GG +   S           +P
Sbjct: 511 CKTIVEHFGGEIRAESEVGEGARFEVCLP 539


>gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 855

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +    + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPENVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|169634358|ref|YP_001708094.1| GacS-like sensor kinase protein [Acinetobacter baumannii SDF]
 gi|169153150|emb|CAP02235.1| GacS-like sensor kinase protein [Acinetobacter baumannii]
          Length = 935

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  
Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRK 334

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 335 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYAD 394

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    + D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 395 NIPQQVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIG 453

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGS 513

Query: 783 TINCR 787
           T    
Sbjct: 514 TFWFT 518


>gi|163739669|ref|ZP_02147078.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161387128|gb|EDQ11488.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 842

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 158/392 (40%), Gaps = 27/392 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +      E +   L +     ++    G+     +    + +   R L+           
Sbjct: 297 IQTLKRRERELEALSRRLEMAVETSKIGIWEIEDNSDSAIWDHRMRELYGDPVGSSDVPL 356

Query: 479 HI-RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--------LSDSVLEYS 529
            + R+      R    +   +    +     D R  L+               DS     
Sbjct: 357 TVWRSFLHPNDRDRVINGFQEALRHVRNHSIDFRVRLENGTHKNIRAMGCSFRDSRGRNR 416

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRS 582
           +I +    T    +N  +  R  + LT +N  L        KAD+ K  F+ ++S+E+R+
Sbjct: 417 MIGVEWDVTRDVDLNN-ELKRTNQQLTHRNAQLTYAKQAAEKADQAKTEFLANMSHEIRT 475

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  IIG +D+L  S    L+++Q Q V+ I  SS  LL ++NDILDL+ ++AG M+++ 
Sbjct: 476 PMNGIIGMSDILAES---PLSAEQEQCVDTIRDSSVALLKIINDILDLSRLEAGKMEIST 532

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
               L   ++     +  K+ E  +        +L      D  RL QI   +LSNA+ F
Sbjct: 533 VDFNLRKCVDGAVDVLRPKLREKGLTFTQTFARELPEQVHGDDGRLRQILVNLLSNAVKF 592

Query: 702 SSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           +  GS V L  +RD  D       V + G  I ED  + VF RF        R   G GL
Sbjct: 593 TQYGS-VSLHVSRDVKDPYHLFIDVVDTGIGISEDQARHVFERFSQADAATTRHYGGTGL 651

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I        GG +S++S++   +     I
Sbjct: 652 GLTISNILAQRMGGGISLNSNEGQGSCFRLEI 683


>gi|297521246|ref|ZP_06939632.1| hybrid sensory histidine kinase BarA [Escherichia coli OP50]
          Length = 583

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 114 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 170

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 171 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 230

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 231 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 290

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 291 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 350

Query: 787 RI 788
            I
Sbjct: 351 HI 352


>gi|242242764|ref|ZP_04797209.1| histidine kinase [Staphylococcus epidermidis W23144]
 gi|242233900|gb|EES36212.1| histidine kinase [Staphylococcus epidermidis W23144]
          Length = 586

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 168/422 (39%), Gaps = 45/422 (10%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
            I    +  +T        +   +  + T +  G     F N+ V++    K  +  K  
Sbjct: 197 RITKPLRQLKTQAQKVSEGDYSQISTVATKDEIGDLSRAFNNMNVEIQEHIKAISSSKNI 256

Query: 437 GETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
            +T+ + + EGV        I LSN     + +          HI +             
Sbjct: 257 RDTLLNSMVEGVLGINNQREIILSNKMADDIMR----------HIDDF------------ 294

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--- 552
                     S +   + ++ T E   +  LE  I    N +  +   +  DS++     
Sbjct: 295 ----------SKESIEQQIEATFESQENEYLELEI----NTRYYVFISSYIDSIQTNGRS 340

Query: 553 --RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               +          D++K  F+ +VS+ELR+P++ + G+T+ +    +   + +    +
Sbjct: 341 GIVMVIRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPD-EIRDSL 399

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +   S  L  LVN++L++A +DA  + +      +  LL++++     +  E  + + 
Sbjct: 400 AIVLDESKRLNRLVNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMT 459

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             S+ +   +  D  R+ Q+ + ++ NA  ++  G ++ +    D+   I ++ + G+ I
Sbjct: 460 FDSNNEEQLWNYDMDRMDQVLTNLIDNATRYTQAGDSIKISIEEDSDFNILTITDTGTGI 519

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  K VF+RF       +R   G GLGL I +  I  HGG + + S     T+   R+
Sbjct: 520 APEHLKQVFDRFYKVDAARKRGKQGTGLGLFICKMIIEAHGGRIDVESELGKGTSFIIRL 579

Query: 789 PS 790
           P 
Sbjct: 580 PK 581


>gi|161506109|ref|YP_001573221.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160867456|gb|ABX24079.1| hypothetical protein SARI_04296 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 788

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 150 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 209

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 210 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 264

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 265 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 321

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++   
Sbjct: 322 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLS 379

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 380 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 438

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 439 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 498

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 499 VSSLPGKGSTFTLT 512



 Score = 44.2 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 146 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 205

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------ 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 206 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 261

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 262 RVGKRHGLMGFGRDITERKRYQDALER 288


>gi|269967809|ref|ZP_06181855.1| sensor protein TorS [Vibrio alginolyticus 40B]
 gi|269827585|gb|EEZ81873.1| sensor protein TorS [Vibrio alginolyticus 40B]
          Length = 895

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 116/238 (48%), Gaps = 7/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S  
Sbjct: 460 RKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDS---GLNPIQKRYAEIINRSGK 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD + ++AG +++ +    L+ ++ +  Q + ++  E  +      +  + 
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVS 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
            +   D  R+ Q+ + ++ NA+ F+ +G   + +     D    +F V + G  I +   
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQ 636

Query: 736 KSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +++F+ F        Q  G GLGL+I +  I   GG + + S +   +     IP +E
Sbjct: 637 RTLFDAFTQAEGGMSQTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIPLEE 694


>gi|167552022|ref|ZP_02345775.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442848|ref|YP_002042586.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197250849|ref|YP_002148253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194401511|gb|ACF61733.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197214552|gb|ACH51949.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205323203|gb|EDZ11042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 778

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 648

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 158/406 (38%), Gaps = 10/406 (2%)

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           PN   + V   +          E++  + +   +           +  + + V     +G
Sbjct: 172 PNAIVMPVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANG 231

Query: 455 RIKLSNPAFRSLWKTEENRLSPG-----THIRNIAATCSRYYN-ESDGWDLFAAIITSFD 508
           R+  ++ +       E +RL         HI +  A      +  + G           D
Sbjct: 232 RVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLD 291

Query: 509 DERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             R     T+   +    +E  +     +  +    +V++  R  + L        +ADE
Sbjct: 292 AARGDGSRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADE 351

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVND 626
           +K  F+  VS+ELR+PL  IIGF+D+L      SL+ ++  +Y   I+ S   LL++VN 
Sbjct: 352 VKTHFLATVSHELRTPLNAIIGFSDVLGGEGAMSLSPERSREYAGIIAQSGRHLLDVVNT 411

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ +  G        + +  L+      +  K   + I +         + VAD + 
Sbjct: 412 LLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGIALTSAPVPASCALVADARA 471

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-- 744
             Q+   ++SNA+ F+ +G  V +   R        V ++G  I E     + + F    
Sbjct: 472 CRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEADLPRLGDPFFQVG 531

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +     G GLGLS+V     LHGG VS+ S+    T +   +P 
Sbjct: 532 GGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 577


>gi|149190330|ref|ZP_01868603.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii
           AK1]
 gi|148835819|gb|EDL52783.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii
           AK1]
          Length = 783

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 153/377 (40%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     +G     N A   L   +E  L   T  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGRKEKELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   ++   E+D   +        D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSEEIAKQVVETDHKVM-------GDNQALTYEQWLEYPDGKKCFYELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S 
Sbjct: 255 KHLGLVGFGRDITER--KRHQESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSH 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN++Q ++++ I+ S+  L ++ NDI+D+   D   ++L    +   D + E++   
Sbjct: 313 ---LNTEQRKHMQTINVSAITLGHIFNDIIDMDKFDRRKLELFPEPLNFEDFVTELESIS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L    V D  RL Q+   ++SNAM F+ +G  V  + A  ++
Sbjct: 370 ALMAEQKGLRFDLERLTDLPEGVVVDATRLRQVIWNLVSNAMKFTKQGGVVMTISADIED 429

Query: 717 G--DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                I  V++ G  IP+     +F  +             G G+GL++ +  I +  G 
Sbjct: 430 NYAHIIIEVEDTGIGIPQHELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLIKMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           +++ S +   +T    I
Sbjct: 490 ITVDSEEGFGSTFTVSI 506



 Score = 44.2 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
            R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ 
Sbjct: 128 AREEAMKDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEEL 187

Query: 226 T-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           T     E  G+       E  ++ K+ ++         +    E       G    Y++ 
Sbjct: 188 TGRKEKELVGLTPWDVYSE--EIAKQVVETDHKVMGDNQALTYEQWLEYPDGKKCFYELR 245

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQLTH 307
           +V          G  G   D+++     + L  
Sbjct: 246 KVPFYSKDGKHLGLVGFGRDITERKRHQESLEK 278


>gi|91776937|ref|YP_546693.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
 gi|91710924|gb|ABE50852.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
          Length = 1158

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 3/259 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            Q +            +  L E+ E L +A + K+ F+ ++S+ELR+PL + +    LL 
Sbjct: 456 EQALRLDERNAALQEVQAQLRERAEDLERASQYKSEFLANMSHELRTPLNSSLILAKLLA 515

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++ G+L+ +Q ++ + I ++   LLNL+NDILD++ V+AG ++L    + +  L N ++
Sbjct: 516 DNREGNLSEEQVKFAQTIYSAGNDLLNLINDILDISKVEAGKLELKPQELAVQHLANSLQ 575

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                   +  +   +    +   +   DRQRL QI   +LSNA+ F+ KGS  +  +  
Sbjct: 576 AVFEPLAQQKKLDFSIDISPQTPDTIYTDRQRLEQILKNLLSNAIKFTDKGSISLHISNN 635

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            +    F+VK++G  I   M +++F  F  V      +  G GLGLSI  +   L GG +
Sbjct: 636 AHDQISFTVKDSGIGIDPSMHEAIFAPFRQVDGTSSRRYGGTGLGLSISRNLAALLGGSI 695

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S+    ++    +P +
Sbjct: 696 NVESARGEGSSFTLLVPRQ 714


>gi|16125315|ref|NP_419879.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
 gi|13637937|sp|Q03228|DIVJ_CAUCR RecName: Full=Histidine protein kinase divJ
 gi|13422363|gb|AAK23047.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
          Length = 597

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 154/363 (42%), Gaps = 11/363 (3%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +Y + +      +D L          G++     A               T    +    
Sbjct: 198 RYASEIIGLETLLDGLPHLAIAVRGQGQVTAVRGAA----------PPGVTRADLVNRGL 247

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +      D   L AAI  +  +   SL     L  + V+   +  +   Q +    ++T 
Sbjct: 248 TGAAAPGDRQRLTAAIAQAHREGSASLTFNPALGVERVVALDMHRVAPNQLVGVLRDITV 307

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E AL +           +  F+ ++S+ELR+PL  I+GF+D+++    G L+ + +
Sbjct: 308 ERHREHALDQARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYA 367

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y E I  S   LL+L+ND+LD++ ++A   +L        + +    + +  +     +
Sbjct: 368 EYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGV 427

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +         ADR+ L QI   ++SNA+ F+ +G  V + A   +G     V + G
Sbjct: 428 QLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTG 487

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  +  + +   +       QR RG GLGLS+V +F  LHGG + I S     TT++ 
Sbjct: 488 VGISPEDLERLGRPYEQAGGAEQRARGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSV 547

Query: 787 RIP 789
           R+P
Sbjct: 548 RLP 550


>gi|325262477|ref|ZP_08129214.1| sensory box sensor histidine kinase/response regulator [Clostridium
           sp. D5]
 gi|324032309|gb|EGB93587.1| sensory box sensor histidine kinase/response regulator [Clostridium
           sp. D5]
          Length = 1209

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/436 (22%), Positives = 170/436 (38%), Gaps = 48/436 (11%)

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE---NLTVQVDLETKYNTLVKV 435
           F   +        W   N ++       NP  G + +F    ++T Q   E   N +  +
Sbjct: 486 FEYLRRRSDKSLFWARTNFRSF-----LNPETGDVIVFFYTFDITEQKLKEQLINKIAAL 540

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW------KTEENRLSPGTHIRNIAA---- 485
             E I               I + N  FR +         +    + G  IR IA     
Sbjct: 541 DYEAIT-------------EIDIRNDKFRGINFESGGRGPDWLEKNFGEAIREIAERSMD 587

Query: 486 -TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQTMLTF 542
              ++ Y     +     ++   +    SL+   E     +  + +  +     +  L  
Sbjct: 588 TPAAQEYLRRLDYGYMQELLEHQEAYTFSLEMHDECGDVRMKRFQVFYINKELGRVCLAR 647

Query: 543 VNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +VTD VR E+     L     A  +A+  K+ F+  +S+E+R+P+  IIG + +   S 
Sbjct: 648 TDVTDVVRKEQQQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMSAIAAQSI 707

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               + +    +  I  SS  LL+L+NDILD++ +++G M L    I   + +N +    
Sbjct: 708 GD--DEQVQDCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIPTEEFINGINSIC 765

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---R 714
             +    N+  + I D  L  F + D  +L Q+   ILSNA+ F+S+G  V        R
Sbjct: 766 YAQAASRNVEYECIVDPVLDDFYIGDAMKLQQVLINILSNAIKFTSEGGRVTFSVEQRQR 825

Query: 715 DNGDF--IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGG 770
              D    F V + G  + E+    +F  F   +        G GLGL+I ++ +++  G
Sbjct: 826 TKNDVLMRFIVNDTGVGMSEEFIPHIFEPFSQESTGTTALYGGTGLGLAISKNIVDMMDG 885

Query: 771 HVSISSSDEGVTTINC 786
            +++ S     T    
Sbjct: 886 RITVRSIKGIGTEFMV 901



 Score = 38.4 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 82/241 (34%), Gaps = 23/241 (9%)

Query: 215 ILWANIS-YKKNTE--TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
           + + N + + ++ E      +         +  + +++ +            + +    H
Sbjct: 181 LGYENEAEFVEDIEGLITNCMHPDDRKRVDEEVERQLQCKDEYVVEYRMKRKDGLYIWVH 240

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQNRYLQ 329
              +  ++           + ID++ +    +++ H   I +N+  A+    FD+   + 
Sbjct: 241 DMGR--RMADENGRPAITSVCIDITTQKKAQNEVLH---IYNNVPGAVFRCRFDEYFSII 295

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N  F E       FL       E +    S+   PE L     K        ++  ++
Sbjct: 296 DANDGFFE-------FLDYTREEFETMGNRLSSVIYPEDLTVMKKKLETQQADGNTVNNE 348

Query: 390 DTWHLPNGQTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           +     NG+   + + +      N       +F ++T +  LE++   L + + E    L
Sbjct: 349 NRLICKNGEVKWISLKAQLLMEENREQYFYCVFVDITEEKLLESRMRDLYEKELEYFAEL 408

Query: 444 S 444
           S
Sbjct: 409 S 409


>gi|156743538|ref|YP_001433667.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
 gi|156234866|gb|ABU59649.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
          Length = 548

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 4/280 (1%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           + G ++ ++D   +  I      Q     +      R    L   N  LR+A+ +K+ F+
Sbjct: 111 IDGLVQTITDITDQSVIQQAHIQQRNELSLLKDRLSRQNVELARTNAELRRANRLKDEFL 170

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+PL+ I+G  +LL+   +G LN +Q + +  I AS   LL ++ND+LDLA +
Sbjct: 171 AGISHEVRTPLSAILGLAELLRAKIVGPLNDEQVEMLSRIEASGRHLLAVINDLLDLAKI 230

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG  +L    +  + +       +       + R+ +  D K+    AD +RL Q    
Sbjct: 231 EAGRFELEPRLVAAHQVCRSSLLMVKELALRKHQRVHINLDPKVEVLHADERRLRQALIN 290

Query: 694 ILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749
           +LSNA+ F+  G  V L    D        +V + G  I  +    +F  F  + N ++ 
Sbjct: 291 LLSNAVKFTPPGGDVGLDLEGDPEQEIVRITVWDTGIGIAAEDIPRLFQPFSQIQNKYQH 350

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + G GLGL +V     LHGG VS+ S     +     +P
Sbjct: 351 DQAGSGLGLVMVARLAELHGGGVSLVSEPGKGSRFTMTLP 390


>gi|300867491|ref|ZP_07112142.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334485|emb|CBN57310.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1231

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 27/267 (10%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            + +    L    E+   A+  K+ F+ ++S+ELR+PL  I+GF+ L+   +  SL+++ 
Sbjct: 725 QTQKQAAELKIAKESADAANSAKSEFLANMSHELRTPLNAILGFSQLMNRDR--SLSTEY 782

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            QY+  I+ S   LL L+NDIL+++ ++AG M L  +   L +LL+ ++  +  K     
Sbjct: 783 IQYLNIINRSGEHLLELINDILEMSKIEAGRMVLYENEFDLYNLLDNLEDMLQLKAQSKA 842

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKA---ARDNGD--- 718
           +++    D  +  FV  D+ +L QI   ++ NA+ F+ KG+ +  +K     R N +   
Sbjct: 843 LKLTFQRDKTVPKFVKTDQSKLRQILINLIGNALKFTEKGNVILRVKVAGRERSNNEQKE 902

Query: 719 ----------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIV 761
                             F V++ G  I  +    +F  F   A   +   G GLGL I 
Sbjct: 903 NTNIPSSFFLLPSSFFLQFEVEDTGPGIAPEDFDKLFEAFGQTATGLKSGQGTGLGLPIS 962

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           + F+ L GG +++SS           I
Sbjct: 963 QKFVQLMGGEITVSSQLGQGAKFTFDI 989


>gi|153825882|ref|ZP_01978549.1| sensor histidine kinase FexB [Vibrio cholerae MZO-2]
 gi|149740380|gb|EDM54511.1| sensor histidine kinase FexB [Vibrio cholerae MZO-2]
          Length = 785

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|126640645|ref|YP_001083629.1| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
           17978]
          Length = 906

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  
Sbjct: 248 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRK 305

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 306 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYAD 365

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    + D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 366 NIPQQVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIG 424

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 425 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGS 484

Query: 783 TINCR 787
           T    
Sbjct: 485 TFWFT 489


>gi|153803102|ref|ZP_01957688.1| sensor histidine kinase FexB [Vibrio cholerae MZO-3]
 gi|124121353|gb|EAY40096.1| sensor histidine kinase FexB [Vibrio cholerae MZO-3]
          Length = 785

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|156740839|ref|YP_001430968.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232167|gb|ABU56950.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 722

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 143/369 (38%), Gaps = 25/369 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +L ++      +    +  +++G+ V   +  + L+NP  ++L   +         +R +
Sbjct: 368 ELHSQLRRQQHLLQAVLRDINDGLVVLDTENNVVLANPVGQALLDDQTASQPWLERMREL 427

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           A+  S         +         D E +      + ++  V     +P   A  +    
Sbjct: 428 ASRLSDDGRPVASPEWIVG-----DPECEEGCIVYQAVASRVRMNDDLPNLTAIVLHDIT 482

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +     RA                 +  F+  VS+ELR+PL  + GF  L+   + G L 
Sbjct: 483 DHKAEERA-----------------RMDFISMVSHELRNPLHTLNGFVKLVLQGRAGPLT 525

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q  ++         L   V+++L+     AG + L+     L+ L+      ++ +  
Sbjct: 526 ALQKDFLSMADEQIEQLSGRVSELLEYNRFKAGRLALHPDVGDLSLLIAGTVSRLSLQAE 585

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  + + V     L     D QR+ Q+ + ++ NAM  +  G T+ + A   + +    V
Sbjct: 586 QQQLSL-VNETPHLPLCRFDNQRIGQVLTNLIENAMKATPAGGTIKISADVHDQEVWVRV 644

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP      +F RF   A   + +G   GLGL+I +  +  HGG + + S +   
Sbjct: 645 SDTGIGIPSSELGKIFQRFYQVAKHRRAQGTHMGLGLAICQQIVEGHGGRIWVESEEGVG 704

Query: 782 TTINCRIPS 790
           TT    +P 
Sbjct: 705 TTFTFTLPL 713



 Score = 37.6 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 61/231 (26%), Gaps = 17/231 (7%)

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE---IKKRMISSSALEKNF 262
           ++ RD      W     ++    +             L +     ++  +     +    
Sbjct: 271 MYARDGQLQAQWVEPIIRRVMRDQTPAVIADSALDPDLGEMSKIGLRSIICVPLFVGDGP 330

Query: 263 CETVSTLEHGNNKSY---KIVRVLNSFGEAGIAIDVSKE-ITVNDQLTHTYEILHNLTVA 318
                T+      ++       +     +AGIAI  ++    +  Q      +L ++   
Sbjct: 331 PRGALTVVSATFAAFSSSDARHLSAFAAQAGIAIGNAELHSQLRRQQHLLQAVLRDINDG 390

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI 378
           + + D    +   N     L +      A+ P  + + E     +     +    W    
Sbjct: 391 LVVLDTENNVVLANPVGQALLD---DQTASQPWLERMRELASRLSDDGRPVASPEWIVGD 447

Query: 379 FSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
               +    ++            V +  +    T  +  ++T     E   
Sbjct: 448 PECEEGCIVYQAV-------ASRVRMNDDLPNLTAIVLHDITDHKAEERAR 491


>gi|296137700|ref|YP_003644944.1| Conserved hypothetical protein containing histidine kinase domain
            [Salinibacter ruber M8]
 gi|295981869|emb|CBH22827.1| Conserved hypothetical protein containing histidine kinase domain
            [Salinibacter ruber M8]
          Length = 1618

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 144/858 (16%), Positives = 284/858 (33%), Gaps = 154/858 (17%)

Query: 51   LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI------- 103
             A+ V E         + L +  SLL +   L   W+   +T E+      RI       
Sbjct: 790  TARNVTEDRRR----EETLRRQKSLLEQTQKLAGAWEADLQTGEV--NWSDRIYEIHEME 843

Query: 104  -DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL--VAETQND--CAIKIEGR 158
                      LSF          +L +ATE L +EG+ +DL    ET       I++ G 
Sbjct: 844  PGAEIDLEKGLSFYT---PESRERLLEATETLVEEGRPYDLELQIETAEGNRRWIRVAGA 900

Query: 159  VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
             + S        +  +   L + T + ++      V   + D +       +    +   
Sbjct: 901  PAESPGGPAEGEITKVAGALQDITERKEEKRRRKQVISRVTDGI----LKVNSEWRVTLV 956

Query: 219  NISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEH--GNNK 275
            N   ++     G+  +K +G S   +F E    R            E     EH  G  +
Sbjct: 957  N---EQAEAAYGMSEEKMLGRSLWDVFGELEGTRFEEVYRKAMRSREPAEIEEHYSGMGE 1013

Query: 276  SYKIVRVLNSFGEAGIAIDV-----SKEITVNDQLTHTYEILHNLTVAIA-IFDQNRYLQ 329
             + +    N  G       V      +E  + +       ++ N     A +FD++    
Sbjct: 1014 WFDVQVYPNGDGGLDFYFRVITERKEREEALREAKRRYQTLIENFPDGGAFLFDEDLRYV 1073

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
                  + +       + +                LPE++  +  +       +      
Sbjct: 1074 LAGGEKIGVVGGPEEVIGSTV-----------REVLPEEIAERQAR-YFRRALEGKRCDF 1121

Query: 390  DTWHLPNGQTLHVIVTS--NPRGGT---IWMFENLTVQVDLETKYNT------------- 431
            +  H   G+   V      N  G     I   +++T +   + K                
Sbjct: 1122 EEEH--GGRRYRVQALPVWNEDGTVSSGIAFAQDITERRRRKEKLKQRKEELKRKKEELK 1179

Query: 432  ----LVKVQGETIDHLSE--GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
                 ++ + +  +   E   V  +  D R    N       +     L           
Sbjct: 1180 QRKKELERKNDLFERAQEIASVGAWEHDLRADEGN-----WTEKAYEILGHPLDADANPE 1234

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKS-LQGTLELLSDSVLEYSIIPLPN--------- 535
               R+Y+  D   +  A++ + ++ + S L+  +    D V    I   P          
Sbjct: 1235 DSLRHYHPEDQPRVREALMEAVENGKSSDLEVRVGSDGDEVRWVRIRGEPQREDGNPEGE 1294

Query: 536  -AQTMLTFVNVTDSVRAERALTEKNEALRK------------------------------ 564
             A+   T  ++TD    E AL    E   +                              
Sbjct: 1295 VARIRGTIQDITDRKEREEALRAAKEETERSRKEAEEARQEAEEARQEAEEAKEEAEEAR 1354

Query: 565  -----ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ---YVEYISAS 616
                 A  +K++ + ++S+E+R+PLT+IIGF ++L     G    ++S    Y   I  S
Sbjct: 1355 REAEEASRLKSALLANMSHEIRTPLTSIIGFAEMLGREAAGLELPEESPLPGYASTIERS 1414

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL  +N +L+L+ + AG M++    + L++        +  +  E  I +++ + G 
Sbjct: 1415 GKRLLETLNGVLNLSKLQAGQMEMEAGPVDLSEQARLAAGELRPEAEEKEISLELETGGD 1474

Query: 677  LGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------------- 718
              +   AD   +  +   +LSNA+ ++ +G  V ++  R++GD                 
Sbjct: 1475 PAALAEADEGGVQIVLRNLLSNAIKYTDEGG-VTVRTYREDGDQEDGDQKDRDQEDGNPQ 1533

Query: 719  ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
                 +  V++ G  +  ++ + +F  F   +     +  G G+GL++    +   GG V
Sbjct: 1534 EDIWAVLEVEDTGIGMDPEVAEGLFKPFRQASEGLSREYEGTGIGLAVTREAVAQMGGSV 1593

Query: 773  SISSSDEGVTTINCRIPS 790
             + +     T +  R+P 
Sbjct: 1594 EVDTQKGQGTCMTVRLPL 1611



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/469 (13%), Positives = 132/469 (28%), Gaps = 91/469 (19%)

Query: 104 DIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG 161
           D+ ++ +   + E W  ++     +L       RK+G +F +  + +    ++ +G+   
Sbjct: 455 DLDRSISREEALELWAGMEPGDRRRLEGTYR--RKDGSAFPVEVDIRRLR-LEGKGQ--- 508

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG---DILWA 218
                  +++     ++ +  +  +KL       + LF+SL   V      G    +  A
Sbjct: 509 ------FMAIS---RDITDRKVAERKLQRERDRLETLFESLPSPVVRCRAEGGRATVEEA 559

Query: 219 NISYKKNTET--EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-EHGNNK 275
           N ++ +      E    Q          +++    +   +  E      V  +   G  +
Sbjct: 560 NPAFAETFPIGQEEAEGQDLNDLLVPAGQKDAAAEIDRRAVEEGPVEHEVRRVAAGGEVR 619

Query: 276 SYKIV---RVLNSFGEAGIAI--DVSKEITVNDQLTHTYEILHNLTVAIAIFD------- 323
            +++    R          AI  D++       +L     +  N   A+ I D       
Sbjct: 620 DFQLQVAGRQPEEGPPEIYAIYTDITDRKRRERRLQRAEALFQNAQDALFIVDVESGGAS 679

Query: 324 -------------------QNRYLQF----HNRSFVELWEIDLAFLATNPSNDELLEFLR 360
                                  L F     N +F     ++   L      +     + 
Sbjct: 680 DGGASGSRDGAAREQGGAPGEGGLSFSVRRVNPAFEGKTGLESEDLRGKDPKEVFGAEVG 739

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--QTLH-VIVTSNPRGG----TI 413
           +             +E      +  E  +    +P G   T     +     GG     I
Sbjct: 740 AE-----------IEEKYRECIRREEPMEYGEEVPIGGETTYWTTRIAPVAAGGETQMII 788

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD---GRIKLSNPAFR--SLWK 468
               N+T     E         Q   ++   +    +  D   G +  S+  +    +  
Sbjct: 789 GTARNVTEDRRREETLRR----QKSLLEQTQKLAGAWEADLQTGEVNWSDRIYEIHEMEP 844

Query: 469 TEENRLSPGTHI------RNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             E  L  G           +         E   +DL   I T+  + R
Sbjct: 845 GAEIDLEKGLSFYTPESRERLLEATETLVEEGRPYDLELQIETAEGNRR 893



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 35/302 (11%)

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLE--HGNNKSYKIVRVLNSFGEAGIAI--D 294
           E  +  +E  ++     SA + +  E +  +    G  + Y+ V      G   + +  D
Sbjct: 336 EDNEELRENGRRSEEKFSAEKPSAEEKLLEVPAGGGEARYYRPVESQAGRGAGRLVVLQD 395

Query: 295 VSKEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V++      +     E L +     I + D    +   N  F E    +   L      D
Sbjct: 396 VTERELRRRERASRLEALFNQSPDMINVHDAEGRILEANPRFFEKTGHEEEDLQGMKVWD 455

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-----KDTWHLPNGQTLHVIVTSN- 407
                          L+    +E    ++   E       + T+   +G    V V    
Sbjct: 456 ---------------LDRSISREEALELWAGMEPGDRRRLEGTYRRKDGSAFPVEVDIRR 500

Query: 408 ----PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG---RIKLSN 460
                +G  + +  ++T +   E K            + L   V     +G    ++ +N
Sbjct: 501 LRLEGKGQFMAISRDITDRKVAERKLQRERDRLETLFESLPSPVVRCRAEGGRATVEEAN 560

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           PAF   +   +   + G  + ++     +  + +   D  A      + E + +    E+
Sbjct: 561 PAFAETFPIGQEE-AEGQDLNDLLVPAGQK-DAAAEIDRRAVEEGPVEHEVRRVAAGGEV 618

Query: 521 LS 522
             
Sbjct: 619 RD 620



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 79/235 (33%), Gaps = 35/235 (14%)

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE---------THKDTWHLPNG 397
             NPS  EL        K PE        E +    + SE           +    +P G
Sbjct: 315 GKNPSGKEL-----EGKKGPEDNEGPEDNEELRENGRRSEEKFSAEKPSAEEKLLEVPAG 369

Query: 398 ----QTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
               +    + +   RG G + + +++T +     +            +   + + V   
Sbjct: 370 GGEARYYRPVESQAGRGAGRLVVLQDVTERE---LRRRERASRLEALFNQSPDMINVHDA 426

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           +GRI  +NP F      EE  L              R  +  +  +L+A +      +R+
Sbjct: 427 EGRILEANPRFFEKTGHEEEDLQGMK-----VWDLDRSISREEALELWAGME---PGDRR 478

Query: 513 SLQGTLELLSDSV--LEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEAL 562
            L+GT      S   +E  I  L      Q M    ++TD   AER L  + + L
Sbjct: 479 RLEGTYRRKDGSAFPVEVDIRRLRLEGKGQFMAISRDITDRKVAERKLQRERDRL 533



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 107/341 (31%), Gaps = 40/341 (11%)

Query: 132 EKLRKEGQS----FDLVAETQNDCAIKIEGRVSGSCA-FLRILSLDGIYSE-----LAET 181
           E+LR+ G+     F     +  +  +++     G  A + R +             L + 
Sbjct: 339 EELRENGRRSEEKFSAEKPSAEEKLLEVP--AGGGEARYYRPVESQAGRGAGRLVVLQDV 396

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ--KAIGE 239
           T +  +     S  + LF+    ++   D  G IL AN  + + T  E    Q  K    
Sbjct: 397 TERELRRRERASRLEALFNQSPDMINVHDAEGRILEANPRFFEKTGHEEEDLQGMKVWDL 456

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFGEAGIAIDV 295
            R + +EE  +        ++   E     + G+    ++    +R+        I+ D+
Sbjct: 457 DRSISREEALELWAGMEPGDRRRLEGTYRRKDGSAFPVEVDIRRLRLEGKGQFMAISRDI 516

Query: 296 S----KEITVNDQLTHTYEILHNLTVAIAIFDQNR---YLQFHNRSFVELWEIDLAFLAT 348
           +     E  +  +      +  +L   +           ++  N +F E + I       
Sbjct: 517 TDRKVAERKLQRERDRLETLFESLPSPVVRCRAEGGRATVEEANPAFAETFPIGQEEAEG 576

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT----LHVIV 404
              ND L         +P        + +  +V +    H+       G+     L V  
Sbjct: 577 QDLNDLL---------VPAGQKDAAAEIDRRAVEEGPVEHEVRRVAAGGEVRDFQLQVAG 627

Query: 405 TSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
                G      ++ ++T +   E +      +     D L
Sbjct: 628 RQPEEGPPEIYAIYTDITDRKRRERRLQRAEALFQNAQDAL 668


>gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 961

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 190/487 (39%), Gaps = 45/487 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N        S + L       +   P   +   +        E +  K+
Sbjct: 239 SLPMGVTIIDENG------HSLISLTG-PDGIIKAEPRWMQERSWFGYTPGFRELVLKKS 291

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              +  S+  S               L+ I+ +   G  ++    +  +           
Sbjct: 292 LPPSSLSIVYSV-PVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ 350

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 351 RLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQII 406

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I  L +  T        
Sbjct: 407 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST-------- 448

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 449 -RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 504

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 505 DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 565 LGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRD 623

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 624 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 683

Query: 784 INCRIPS 790
              RIP 
Sbjct: 684 FTLRIPL 690


>gi|303247088|ref|ZP_07333363.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491514|gb|EFL51399.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 871

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 201/532 (37%), Gaps = 31/532 (5%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHNRS 334
               +  L        A     E  + +       +   +   I + D+    +   N++
Sbjct: 197 WLSFLAFLGISLALAGARRRKAEKALTESEGKYRLLFDQVMDVILLVDEETGRILDCNQA 256

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
               W  D   L     +   L   R++    E      + +    V + +        +
Sbjct: 257 VATEWGYDREELIGREPSRLRLPPRRASPVATEIR----YADGRRVVMRETRLVTHFGEV 312

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-----V 449
            N        T   R   + +F ++T +   ET       +     D+L +GV      +
Sbjct: 313 RNASVRTGFFTFGGRQVRLEIFRDVTERNKDETALKERAAMLRGLGDNLPDGVIYKYELL 372

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIITSF 507
                R    +     L+              +  I         +++   + +  +   
Sbjct: 373 ADRTRRFLYVSQGVERLFHVTVPDALADASSVLSRIEPEGLDALRQAEMRAMDSLAVIDV 432

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALR 563
                  QGTL        ++   P   A   + F     +VT   R E +L        
Sbjct: 433 QARFTDGQGTL-----RWGQFRAAPRRTAAGGVLFDGLLFDVTGQKRTEDSLRLAKSEAE 487

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A   K+ F+ ++S+E+R+PL  ++G   LL+TS+   L+++ +++V    A    L+ +
Sbjct: 488 AASLAKSEFLANISHEVRTPLNGVLGMLQLLETSR---LSAEDAEHVATALACGRGLVRV 544

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA- 682
           + DILD + ++AG + L      +  ++ +V   ++ +  +  +   +   G + +F+A 
Sbjct: 545 LADILDFSLIEAGRLVLRRDACDIRSVIADVFGVLSLECEKKELCATLDVAGDVPAFIAT 604

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VILKAAR-DNGDFIFSVKNNGSSIPEDMCKSV 738
           D  RL QI   ++ NA+ F+ +G+    V L + R +    +F+V++ G  IPED  +++
Sbjct: 605 DAARLRQILFNVVGNAVKFTPRGTVHLSVSLASRRGEETHLLFAVRDTGIGIPEDRIEAI 664

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F  F         +  G GLGL IV+  + L  GH+++ S   G T     I
Sbjct: 665 FEPFTQIDGSLTRKYGGTGLGLGIVKRLVGLLDGHITVESEPGGGTEFAFTI 716


>gi|159026945|emb|CAO89196.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 665

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 167/403 (41%), Gaps = 25/403 (6%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  + +    +  +   +D L    ++G  +   + ++ L NPA R
Sbjct: 247 GELILSFNEMAEKLERYDEQNIEEMTAEKAKLDTLMSTIADGAILLDTNFQLLLINPAAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCS-----RYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            ++  E+  +     +    +  +       Y  + G  L      + +   K+     E
Sbjct: 307 EIFGWEDQEIIGKNVLHLFPSELTVKLTKPLYQIAAGETLQPEESANQNHHPKNAVIDQE 366

Query: 520 LLSDSVLEYSII---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFV 573
             + S  E+ +    P P    +L            R +    + + +    +E K+ F+
Sbjct: 367 NNNYSPAEFRLSLTNPKPCTIRILLTQVFDQYRENVRGIAMTLQDITRETELNEAKSQFI 426

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+PL NI  F + L        ++++ +++E  +  +  L  LVND+LDL+ +
Sbjct: 427 SNVSHELRTPLFNIKSFIETLTEFGEDLSDTEKREFLETANHETDRLTRLVNDVLDLSRL 486

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++     N   + +  L+ +  ++      +  + +    +  L   +     LLQ+ + 
Sbjct: 487 ESSR-NYNLDALDIGQLIEQTLRTYQLNARDKGLELSSDIEANLLPILGHYDLLLQVLTN 545

Query: 694 ILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ N++ F+  G  V+++A + + D           V + G  I  +   ++F+RF    
Sbjct: 546 LVGNSLKFTPAGGKVVIRAYKISKDNPQETLKIRVEVSDTGIGIDAEDQIAIFDRFYRVE 605

Query: 747 HRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +R     G GLGLSIV++ I  H   + + S     TT    +
Sbjct: 606 NRVHTLEGTGLGLSIVKNIIEKHYSQIHLISEVGIGTTFWFDL 648


>gi|150007414|ref|YP_001302157.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149935838|gb|ABR42535.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 793

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/497 (16%), Positives = 186/497 (37%), Gaps = 40/497 (8%)

Query: 321 IFDQNRYLQFHNRSFVELWEID----LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           + D++  L + N  + ++         A     P          + N L + +      E
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEEYEALFHNKPDLY-FKGHDEAWNILSKNV-----YE 78

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNTLVK 434
            I +     ET          +   +  T   +   G    +  +T   D+  +      
Sbjct: 79  TIANKASGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIE--- 135

Query: 435 VQGETIDHLSEGVAV---FGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            Q  T D++  G         DG   +  +N  +      ++N     +    +  T   
Sbjct: 136 -QTITYDNIP-GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSRN 193

Query: 490 YYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLE-------YSIIPLPNAQTMLT 541
             N      L    +      + K+  G    L+   +        Y I+ +        
Sbjct: 194 TMNAHIPCMLKGEPVHFVIQSKDKNGNGAWLQLNGECIGWEGDEPIYLIVYINITDITEQ 253

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                   +  + L E  ++  +A++ K+ F+  +S+++R+P+  I+G   + K      
Sbjct: 254 RELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV--D 311

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +    +E I+ +S +LL+L+N++LD++ +++G + L+     + +LL ++   +  +
Sbjct: 312 ERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQPE 371

Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---- 716
           +      + +   + +  +   D QR+ Q+   ILSNA+ ++ +   + ++    +    
Sbjct: 372 IKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKDPHNG 431

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
            G++ F  ++NG  +  +    +F  F   +     + +G GLG+SI    I + GG + 
Sbjct: 432 IGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMGGDIK 491

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +     +P 
Sbjct: 492 VESEYGKGSRFTIDMPL 508



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 122/400 (30%), Gaps = 34/400 (8%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR--------MISSSALE 259
             D+   +LWAN  Y          ++        L+ +   +           + +   
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEEYEALFHNKPDLYFKGHDEAWNILSKNVYETIANKA 84

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE---ILHNLT 316
             +   +        +  KI        + GI I  +    V D +    E      N+ 
Sbjct: 85  SGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQTITYDNIP 144

Query: 317 VAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             I+      D +  L   N  +++   ID     +      L E  R  N +   +   
Sbjct: 145 GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSR--NTMNAHIPCM 202

Query: 373 TWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPRGGTIWM-FENLTVQVDLETKYN 430
              E +  V +S + + +  W   NG+ +       P    +++   ++T Q +L+ K  
Sbjct: 203 LKGEPVHFVIQSKDKNGNGAWLQLNGECIGWEGDE-PIYLIVYINITDITEQRELQKKLE 261

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              K   E +    +       D   ++S+     +            H+          
Sbjct: 262 KQSKQLKEALKSAEQANQA-KSDFLARMSHDIRTPMNAIMGMATIAKAHVDERERILDCM 320

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
              +    L  ++I    D  K   G L L  D   E+++  L     +   +   +   
Sbjct: 321 EKINGASKLLLSLINEVLDMSKIESGRLILSED---EFNVGELLQDLVV---MMQPEIKN 374

Query: 551 AERALTEKNEALRKAD------EIKNSFVQHVSYELR-SP 583
            ++ L    + LR  +       IK   +  +S  ++ +P
Sbjct: 375 KQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTP 414


>gi|319900185|ref|YP_004159913.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319415216|gb|ADV42327.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 982

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/506 (20%), Positives = 208/506 (41%), Gaps = 35/506 (6%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFDQNRYLQFHNRSFVELW-EIDLAFLA 347
           I  D+++E     ++T      H +  +  I ++        +N  +  ++  ID     
Sbjct: 500 ICRDITQEREQLHEITRYATHTHQINKSCGITLWK-------YNP-YTRIFHNIDPYLDE 551

Query: 348 TNPSN--DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
            +P    D+LL F    +K      +      + +  +    H    +  + +  + I  
Sbjct: 552 YSPDMSADDLLRFTHPNDKDT-VSQYLGRSAGLCTDMQQFHCHCAWENSMDYRYYNFIQM 610

Query: 406 SNPRGGTIWMFENLTVQVDLETKY-NTLVKVQGETIDHLSEG-VAVFGPDGRIKLSNPAF 463
                        +T   + E +  + +++   E       G V  +  D R        
Sbjct: 611 PFFDENGTLTEYGITRIDETEKEQTDRMLRFSQEV------GKVGSWSIDLRTGKHMHTE 664

Query: 464 RSLWKTEENRLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                 E +   P   IR+ I       +N             S+    K+  G ++ + 
Sbjct: 665 EIHTLLELDVDDPDFDIRSCIYEEDRPEFNRLAAESKEQGADFSYILRFKTPGGKIKWME 724

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              +         A    T  +VTD  RA            ++D++K++F+ ++S+E+R+
Sbjct: 725 SRCIAIKDTEDKVAGYYGTLTDVTDMHRA-------RLKAEESDQLKSAFLANMSHEIRT 777

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL +I+GF+D+L T  L      + ++ + I +++  LL L+NDILDL+ +++G ++   
Sbjct: 778 PLNSIVGFSDILVTEDLSP--EDKREFGKIIRSNNEQLLTLINDILDLSKLESGCVEFTE 835

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           +   + +LL E+  S   +  E   ++  +  GK      DRQRL+++ +  ++NA+ ++
Sbjct: 836 TDFGVEELLGEIFSSYQPRFRELPTKLVYVPKGKSIRLHQDRQRLIEVLTNFVNNAIKYT 895

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
           S+GS + L   + +    F+V + G  +P +    +FNRF         +G GLGLSI +
Sbjct: 896 SEGS-ITLDYEKVDQGVKFTVTDTGVGMPPEALDKIFNRFEKLGS--MVKGTGLGLSICK 952

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
              +   G + + S+    +T    +
Sbjct: 953 MLADRMHGKIGVDSTLGKGSTFWFWL 978



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 7/192 (3%)

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           +++ +   +  H  N + +            +    ++TV+V+   K   L+       +
Sbjct: 83  FRTKDADGNYRHY-NIRFMRHTDAQGNMDYMLCTRRDITVKVEQHQKQTELINQFTGIFN 141

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            L      F  +G++  +N     + + + +      +I         +         F 
Sbjct: 142 QLPYAFLTFDNEGKVLNANELAILMSREKFHCDIHKVNIIQYYVYNDEHREAFCQHRPFT 201

Query: 502 AII-TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERAL 555
             + T  D E         +    V + + IP+ + +           ++T     ER  
Sbjct: 202 YTLSTQLDGEAGMPFCQENIEHFFVGDINYIPIQDRKGRFIVNLLLVRDITQDTLREREN 261

Query: 556 TEKNEALRKADE 567
               + L   DE
Sbjct: 262 VRFQKKLYILDE 273


>gi|148263614|ref|YP_001230320.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397114|gb|ABQ25747.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 832

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 170/437 (38%), Gaps = 60/437 (13%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           T+ +  +L  +V    +    + +    ++   + +    P+G I   N     L+    
Sbjct: 397 TVSLLADLAWEVVERKRIEEALSLLAAIVEFSDDAIIGISPEGTIVSWNRGAERLYGYPA 456

Query: 472 N--------RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL----- 518
                     L P  H   +A     +  +    +    +    D  R  +  T+     
Sbjct: 457 EEVKVCPVSILIPDDHPEEMAYILD-HVRQGKPIERHETVRLRKDGSRVEVSVTISPICN 515

Query: 519 ---ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ER--------------------- 553
              +++  S +   I  L  A+  L  +N     R  ER                     
Sbjct: 516 SGGKIIGASTIARDITELKKAEIELRKLNEELEQRVIERTADLNRRSTELSESQQALMNI 575

Query: 554 ---------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                     L   N  L++ D +K+ F+  +S+ELR+PL +IIGF+ ++    +G +N+
Sbjct: 576 VEDLNEKTDELEGANTKLKEFDRLKSMFIASMSHELRTPLNSIIGFSSVILNEWIGPVNA 635

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q + +  I      LLNL+ND++D++ ++AG ++         DL++E    +   M E
Sbjct: 636 EQKENLAIILRCGKHLLNLINDVIDVSKIEAGKIESVAEEFDFYDLISEAVGLVRKDMEE 695

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKA------ARDNG 717
             + ++V           DR+RLLQ    +LSNA+ F+  G  TV  +       A + G
Sbjct: 696 KGLDLQV--AATHQQMHMDRRRLLQCVLNLLSNALKFTEHGGLTVETRIMPCPGEAPEAG 753

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF-INLHGGHVSI 774
               SV + G  I E+    +F  FV  A   +    G GLGL +       +  G + +
Sbjct: 754 VAEISVTDTGIGIREEDLPKMFQPFVRLASPLQATVPGTGLGLYLTRKLAAEVLKGDILL 813

Query: 775 SSSDEGVTTINCRIPSK 791
           +S     +    RIP +
Sbjct: 814 TSEYGKGSRFTLRIPVR 830



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 78/252 (30%), Gaps = 28/252 (11%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL-- 356
             +   +    ++ +N        D++      N + +         +       +L+  
Sbjct: 3   RALRTTIEELADLYNNAPCGYHSLDKDGVFTRINDTELRWLGYSREEVIGKIKFHDLITD 62

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRGGT 412
             L++      Q   + W  ++          +      +G  L V+++++    P G  
Sbjct: 63  RSLKTFQDNFPQFKVRGWVHDL----------EFEMVRKDGSILPVLLSASAVTDPDGNY 112

Query: 413 IW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           +       ++T +   E +   L       ++   + +    PDG I   N     ++  
Sbjct: 113 VMSRSTVYDITERKRAEREIVQL----AAIVEFSDDAIIGKTPDGIITSWNKGAERIYGY 168

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             + +        + A  +    +       +  I  ++  R+   G L  +S      +
Sbjct: 169 TADEIVGKPISTLVPADHADEVPQILDKIRRSEHIEHYETVRRRKDGQLIEMS-----LA 223

Query: 530 IIPLPNAQTMLT 541
           I P+   +  +T
Sbjct: 224 ISPIREREGKIT 235



 Score = 44.9 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 46/289 (15%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK 245
           + L   I     L+++        D+ G     N          G   ++ IG+ +  F 
Sbjct: 3   RALRTTIEELADLYNNAPCGYHSLDKDGVFTRIN---DTELRWLGYSREEVIGKIK--FH 57

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR--------------VLNSFGEAGI 291
           + I  R + +        +    +       +++VR              V +  G   +
Sbjct: 58  DLITDRSLKTFQDNFPQFKVRGWVHD---LEFEMVRKDGSILPVLLSASAVTDPDGNYVM 114

Query: 292 AI----DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           +     D+++      ++     I+     AI     +  +   N+    ++      + 
Sbjct: 115 SRSTVYDITERKRAEREIVQLAAIVEFSDDAIIGKTPDGIITSWNKGAERIYGYTADEIV 174

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
             P     L     A+++P+ L+            +  E ++      +GQ + + +  +
Sbjct: 175 GKPI--STLVPADHADEVPQILD-------KIRRSEHIEHYETVRRRKDGQLIEMSLAIS 225

Query: 408 PRG-------GTIWMFENLTVQVDLE----TKYNTLVKVQGETIDHLSE 445
           P         G   +  ++TVQ   E     +   L      T+D L E
Sbjct: 226 PIREREGKITGASTIGRDITVQKRTESINMARLRLLQFAATHTLDELLE 274


>gi|168238030|ref|ZP_02663088.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734174|ref|YP_002116278.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|204931174|ref|ZP_03221968.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194709676|gb|ACF88897.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197289156|gb|EDY28525.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204319941|gb|EDZ05147.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322615332|gb|EFY12253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618309|gb|EFY15200.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322622886|gb|EFY19730.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626792|gb|EFY23589.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631361|gb|EFY28121.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635372|gb|EFY32086.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322647057|gb|EFY43558.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651580|gb|EFY47953.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655052|gb|EFY51363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657655|gb|EFY53923.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664151|gb|EFY60349.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667434|gb|EFY63596.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322674682|gb|EFY70774.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675685|gb|EFY71758.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682321|gb|EFY78344.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684924|gb|EFY80922.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195871|gb|EFZ81042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198988|gb|EFZ84085.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204312|gb|EFZ89321.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207659|gb|EFZ92606.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323211288|gb|EFZ96132.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214770|gb|EFZ99519.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221250|gb|EGA05676.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323224008|gb|EGA08301.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230342|gb|EGA14461.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233318|gb|EGA17412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239355|gb|EGA23405.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242394|gb|EGA26420.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246904|gb|EGA30870.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254163|gb|EGA37983.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255280|gb|EGA39057.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262743|gb|EGA46299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264053|gb|EGA47561.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269439|gb|EGA52894.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 778

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|218780204|ref|YP_002431522.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761588|gb|ACL04054.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 917

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 161/377 (42%), Gaps = 26/377 (6%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             L  +    ++ L E +      G I  +N A   L          G  +  +      
Sbjct: 546 KRLSVLYQSFLNSL-EAIVFTDGKGFITDANKAMLDL---------YGYSMEELLGQTPA 595

Query: 490 YYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNA---------QTM 539
                   +++  I    + +   S  G L   + +  E + +   N+           +
Sbjct: 596 MLGSPGQNEVYNEIRRKLEKQAGGSWSGELSHRAQNGDEVTALVTVNSLSDSTGNAVGHI 655

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T+    E+AL  +N  L + +++K+  +   S++L+SPL  I G+  L+K +  
Sbjct: 656 WHMADITERRNLEKALESQNIKLERLNQLKSDLMAVTSHDLKSPLNVIAGYAGLIKETAG 715

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +     ++Y++ I  S   ++  +  ILD   +++G + +    + LN+LL E  +++A
Sbjct: 716 FASPETIAKYLDNIIFSVNRMVKFIGQILDAQKIESGKLDVEMEPLFLNELLQEHVENMA 775

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
           T +   + RI     G      AD +R++Q+F  +LSNA+ FS  G  V +    D GD 
Sbjct: 776 TALQNGDKRIIFQDKGGRRKVNADPERMIQVFDNLLSNALKFSPDGGAVEVHYKDDGGDR 835

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFV----SNAHRGQRR-GVGLGLSIVESFINLHGGHVS 773
               + + G  IPE   + +F+R+        H  +R  G GLGL I    + +HGG +S
Sbjct: 836 VEIFISDEGPGIPESDMEKIFDRYFQVKKQGTHSTERTYGSGLGLYISREILRMHGGSIS 895

Query: 774 ISSSDEGVTTINCRIPS 790
           + +  EG       +P+
Sbjct: 896 VRNQAEGGCQFILSLPA 912



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 18/154 (11%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-------PSNDELLEFLR 360
               L++L  AI   D   ++   N++ ++L+   +  L          P  +E+   +R
Sbjct: 552 YQSFLNSL-EAIVFTDGKGFITDANKAMLDLYGYSMEELLGQTPAMLGSPGQNEVYNEIR 610

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
              +     +W     +                L +     V        G IW   ++T
Sbjct: 611 RKLEKQAGGSWSGELSHRAQNGDEVTALVTVNSLSDSTGNAV--------GHIWHMADIT 662

Query: 421 VQVDLETKYNTLVKVQGETIDHL-SEGVAVFGPD 453
            + +LE    +   ++ E ++ L S+ +AV   D
Sbjct: 663 ERRNLEKALESQN-IKLERLNQLKSDLMAVTSHD 695


>gi|94263606|ref|ZP_01287416.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456026|gb|EAT06177.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 529

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 158/390 (40%), Gaps = 36/390 (9%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +        +    +      I ++ +G+ V     RI ++NPA   +++        G 
Sbjct: 136 VAELAAKTREQENTLSYLNAIIGNIPDGLLVTNDRARITMANPALGGMFREAAGGNLVGR 195

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             R + A             + AAI TS   +++++   +EL    +       +     
Sbjct: 196 DCREVFAD--------SLGPMLAAISTS---QQQAVTVQVELAGGRIGSAIGTAIYRGGA 244

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                         R +T + E     + +K+ FV  VS+ELR+PLT+++GF  L+    
Sbjct: 245 GQEEFIGYLI--VVRDITHQKEI----ERMKDDFVSAVSHELRTPLTSVLGFARLIAKKL 298

Query: 599 LG---SLNSKQS-----------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            G    +  +Q              +  I      L  L+N++LDL+ ++AG ++     
Sbjct: 299 EGVILPVVPRQDPRVERAVRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEP 358

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           +   +++     +      E    +    + +L     DR R++Q+   +++NA  F+  
Sbjct: 359 VTAEEIVKRALDATTGLFGEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFTDH 418

Query: 705 GSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
           G  V ++A R  G+   +F V ++G  I  +  +SVF +F         + +G GLGL I
Sbjct: 419 G-RVTVRARRAAGEEAVLFEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPI 477

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +  +  HGG V+  S+    +T    +P+
Sbjct: 478 CKEIVEYHGGTVTAESTPGAGSTFRFTLPT 507


>gi|325921523|ref|ZP_08183376.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            gardneri ATCC 19865]
 gi|325547993|gb|EGD18994.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            gardneri ATCC 19865]
          Length = 1193

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 11/252 (4%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A + K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 793  RMRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 849

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I ++   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 850  QGYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLIRQVAELVRPTAEQKQ 909

Query: 667  IRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFS 722
            +  +    D    +   D  R+ QI   +L NA+ F+ +GS    V +            
Sbjct: 910  LVFECELEDALPPALHGDASRVQQILLNLLFNAVKFTERGSVSLRVSVLPQGHKQGIRME 969

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  +  +    +F RF          +  G GLGL+I        GG V++SS   
Sbjct: 970  VRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGEVTVSSELG 1029

Query: 780  GVTTINCRIPSK 791
                    +P +
Sbjct: 1030 RGACFVVELPLR 1041


>gi|330906560|ref|XP_003295520.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1]
 gi|311333138|gb|EFQ96385.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1]
          Length = 1988

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 134/286 (46%), Gaps = 28/286 (9%)

Query: 525  VLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +LE S+    N +T   +  ++ D    E+ L E  +        K+ F+ ++S+E+R+P
Sbjct: 1232 LLEKSLAENNNEETWYGSATDINDHKLLEQTLKETMD-------AKSKFLSNMSHEIRTP 1284

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I G  + L  S    LN++Q ++V  I AS+  LLNL+NDILDL+ V+AG++KL+  
Sbjct: 1285 LNGISGMVNFLLDSV---LNAEQLEHVNIIKASTDSLLNLINDILDLSKVEAGMIKLSME 1341

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + L  LL EV         +  + +  ++ +G       D+ R+ Q+   ++ NA+ F+
Sbjct: 1342 WLHLPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPAEVKGDKFRIRQVLLNVVGNAIKFT 1401

Query: 703  SKGST-VILKA---------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQ 750
             +G   +  K            +     F V + G    +   K +F RF     +   Q
Sbjct: 1402 ERGEIFIRCKVQPPDRSRPLKENETMVRFEVIDTGQGFTDAEAKYLFKRFSQIDASSTRQ 1461

Query: 751  RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR----IPSKE 792
              G GLGL+I   F+ LHGG +   S+    +T        +P+ E
Sbjct: 1462 HGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTIKFGLPTAE 1507


>gi|293373302|ref|ZP_06619660.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292631698|gb|EFF50318.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 502

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 108/517 (20%), Positives = 212/517 (41%), Gaps = 47/517 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              N     +++IL NL   I + D   +    + N+       I     A   ++ E+ 
Sbjct: 6   KKTNHSYRFSFDILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEE-AIGHTDYEIY 64

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGTI 413
              R          ++   + +    K     ++ +  P+G    T+ V    +  G   
Sbjct: 65  GEERGE-------KYRHIDKELIQAGK-VYRKEEKYTTPDGITHDTIAVKSIISWEGEKK 116

Query: 414 WMF---ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           W+     ++T   + E +           +K Q   +  +  G+     + R+      +
Sbjct: 117 WLLATRWDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRV-----QW 171

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +              I    S   NE  G   F   I      R ++      + D
Sbjct: 172 EETRQIASLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTI-----RVDD 226

Query: 524 SVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              E +  P+   +        +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++
Sbjct: 227 VDFEVTATPVFGDEKETEIIGGLLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANM 286

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF++++  ++       + ++V+ IS+++ +LL L++DILDL+ ++AG
Sbjct: 287 SHEIRTPLNAIVGFSEMVCQTEEEEE---RKEFVKIISSNNILLLQLIDDILDLSKIEAG 343

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   +N+L+  + + +  K    +I+I             DR RL Q+     +
Sbjct: 344 TMEFTFAQTDINELMEGICRQMQEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTN 403

Query: 697 NAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           NA+ F+ KGS  +  +      +  F VK+ G  IP D    VF RFV        +G G
Sbjct: 404 NALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSF--IKGTG 461

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+I    +   GG + + S +   +    RIP  E
Sbjct: 462 LGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPRSE 498


>gi|253575383|ref|ZP_04852721.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845380|gb|EES73390.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 469

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 123/254 (48%), Gaps = 4/254 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +T LT     +      ++      L++  + +  F  ++S+ELR+P+T + G+  +LK 
Sbjct: 209 ETRLTIQRDDEIGVLADSINHLAIELQRYRDTRQEFFANISHELRTPITYLEGYAQVLKK 268

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +L     ++ +Y++ I   +  L +LV+D+ DLA ++ G + L+   I L ++ +   Q
Sbjct: 269 -RLYETEEEKDKYLDIIHEEAMRLQHLVDDLFDLAKMEEGKVSLSLEWIDLAEITDNAVQ 327

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            I  K  E N+ ++   +  +     D  R  Q+   +L NA+ ++ KGS ++++  ++ 
Sbjct: 328 KIKLKAGEKNLSLQTKINSNIPLIYGDGLRTEQVLLNLLENAVRYTEKGS-IVVELDQNR 386

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                +V++ G  IPED    +F+RF     +   Q  G GLGL I +  + L GG + +
Sbjct: 387 SFIYIAVEDTGMGIPEDEIPYIFDRFYRVEKSRSRQYGGTGLGLPIAKKLVELQGGELKV 446

Query: 775 SSSDEGVTTINCRI 788
            S     T    R 
Sbjct: 447 FSKLGHGTRFEIRF 460


>gi|218438439|ref|YP_002376768.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171167|gb|ACK69900.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 585

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 4/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +  +  +          + ++IK+ F+  +S+ELR+PLT I+G++ LLK   +   N
Sbjct: 190 MDEERNQLLKNEHSARLEAEQLNQIKDEFLMMLSHELRTPLTAILGWSQLLKKGLITQKN 249

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K  + +E I  ++ +   LV+D+LD++ + A  + L    I L  ++     SI     
Sbjct: 250 -KVDKALETIERNAKLESKLVDDLLDVSRILANKLILKKEPIDLEFIIKLTLDSILLTAQ 308

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              I IK +          D+QRL Q+F  +LSNA+ F+ +G  + +   +DN      +
Sbjct: 309 AKEITIKTLIQSPNLKVWGDKQRLQQVFWHLLSNAIKFTGEGGVITITLTQDNERAKIII 368

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS-SDEG 780
            + G  I  ++   VF RF       QR   G+G+GLSI    + LH G +   S  +E 
Sbjct: 369 HDTGQGIKPELLPFVFKRFWQADSSSQRIAGGLGIGLSIAHRLVELHNGQIQAESLGEEK 428

Query: 781 VTTINCRIPSK 791
             T    +P +
Sbjct: 429 GATFTVILPLQ 439


>gi|189191800|ref|XP_001932239.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187973845|gb|EDU41344.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 2314

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 134/286 (46%), Gaps = 28/286 (9%)

Query: 525  VLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +LE S+    N +T   +  ++ D    E+ L E  +        K+ F+ ++S+E+R+P
Sbjct: 1584 LLEKSLAENNNEETWYGSATDINDHKLLEQTLKETMD-------AKSKFLSNMSHEIRTP 1636

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I G  + L  S    LN++Q ++V  I AS+  LLNL+NDILDL+ V+AG++KL+  
Sbjct: 1637 LNGISGMVNFLLDSV---LNAEQLEHVNIIKASTDSLLNLINDILDLSKVEAGMIKLSME 1693

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + L  LL EV         +  + +  ++ +G       D+ R+ Q+   ++ NA+ F+
Sbjct: 1694 WLHLPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPAEVKGDKFRIRQVLLNVVGNAIKFT 1753

Query: 703  SKGST-VILKA---------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQ 750
             +G   +  K            +     F V + G    +   K +F RF     +   Q
Sbjct: 1754 ERGEIFIRCKVQPPDRSPPLKENETMVRFEVIDTGQGFTDAEAKYLFKRFSQIDASSTRQ 1813

Query: 751  RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR----IPSKE 792
              G GLGL+I   F+ LHGG +   S+    +T        +P+ E
Sbjct: 1814 HGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTIKFGLPTAE 1859


>gi|254285971|ref|ZP_04960932.1| sensor histidine kinase FexB [Vibrio cholerae AM-19226]
 gi|150423881|gb|EDN15821.1| sensor histidine kinase FexB [Vibrio cholerae AM-19226]
          Length = 785

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|310827090|ref|YP_003959447.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612]
 gi|308738824|gb|ADO36484.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612]
          Length = 1426

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 116/546 (21%), Positives = 214/546 (39%), Gaps = 55/546 (10%)

Query: 278  KIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
             +V   ++    GI    D++++      +       ++L   + +F     +   + ++
Sbjct: 744  NLVETPDTGDVTGILTVTDITRQTISERMMGKLAVASYDLVAEVDVFQDRYRIISKDDAY 803

Query: 336  VEL---------WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
             +          W  DL      P + + +  L     LP+QL  K      +SV    E
Sbjct: 804  SDTPGQEGIYSEWIGDLLDTRVVPKDKDQVARLLDVRTLPDQLRAKGDYSFSYSVI--GE 861

Query: 387  THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
              +  +      TL + +     G       ++T  +    +   L+ V   T + +  G
Sbjct: 862  KGELLFKNMTVSTLDMRL-----GRVCLARTDITDSI---REQQGLLNVIAYTFEMI--G 911

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
                   GR  +    +      E             A   + +Y ESDG    A     
Sbjct: 912  FIDIDT-GRTTM----YTRQIVLENLPPYVVEDYTKSAGRLAEFY-ESDGGQDNAQKQFC 965

Query: 507  FDDERKSLQGTLE--------LLSDSVLEYSIIPLPNAQTMLTFV----NVTDSVRAER- 553
             D  R  L+   E         L D      I  L   +   T      +VTD + +ER 
Sbjct: 966  LDTLRDRLKKKPEGYDFVLPYRLGDQTRYKQINVLWGDRNQKTVCLVRADVTDMLASERR 1025

Query: 554  ---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               AL +      KA++ K+ F+  +S+++R+P+  ++G T L       S  ++    +
Sbjct: 1026 TKAALEKALSLAEKANQAKSDFLSSMSHDIRTPMNAVMGMTTLAAAHLDDS--ARVRDCL 1083

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I  +S  LL+L+NDILD++ ++   + LN+S I ++DLL+++   IA +  +N +   
Sbjct: 1084 DKIVVASRHLLSLINDILDMSKIERSQITLNHSAIAVSDLLSQLNAMIAPQAADNGLSYS 1143

Query: 671  VISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFS 722
              ++  +   F  D  R+ QI   +LSNA+ F+ +G  V L+          D   + F 
Sbjct: 1144 ARTENIRHPYFYGDLLRINQILINLLSNAIKFTPEGGRVELRVEEIAPVKAPDAVRYRFI 1203

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            V + G  + E     VF  F  + +  +  G GLGLSI +  ++L  G ++  S +   T
Sbjct: 1204 VSDTGVGMSEAFLIHVFEPFTRDRNVTRVEGTGLGLSITKGLVDLMEGEITAESQERAGT 1263

Query: 783  TINCRI 788
                 +
Sbjct: 1264 VFRVEL 1269



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 122/379 (32%), Gaps = 45/379 (11%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAG-DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
                  + D+    ++       ++L+AN         +    ++ +      ++   +
Sbjct: 11  EADQTASVLDNAPVAIYVSALDNWELLYANR------RAKAHFSEQLLKPGLTCYQAAGQ 64

Query: 250 KRMISSSALEKNFCETVSTLEHGN---NKSYK----IVRVLNSFGEAGIAIDVSKEITVN 302
            R     + EK   ET+   +  +    + Y+    IV   +   +    +D++      
Sbjct: 65  DRPCPFCSAEKMSRETLLVRKFKHPQSGRVYELSGKIVDWADRPAQIEYIVDITDREREE 124

Query: 303 DQ----LTHTYEILHNLTVAIAI--FDQNRYL-QFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++         E   ++   + +  FD  + L  FHN +F E+       +     + + 
Sbjct: 125 ERSRSLRAELEETFTSIPCGLCVYQFDGIQILPVFHNPAFYEIMGYSEEHIRDVEQSTDF 184

Query: 356 LE-FLRSANKLPEQLNWKTW-KENIFSVYK--SSETHKDTWHLPNGQTLHVIVTSNPRGG 411
           L      A  L +++         +   Y+  +    +  W   +G    V    +    
Sbjct: 185 LGVHPGDAGMLRQKIQQAILCNGTMHYTYRVFNDRKGEYCWIRLDGS---VKEKEDGTKL 241

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTE 470
              ++ +++  V LE +     +     ++ +  GVA +   DGR     P F S     
Sbjct: 242 LYGVYSDVSESVRLEKELTAANEKLEHIVNAIPGGVASYKVEDGRFI---PTFYSDG--- 295

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                    I +++      Y E    D+F  II   D ER        + S  VL+ S 
Sbjct: 296 ---------IMSLSGHTREEYREMVQDDVF-DIIYEADRERVHAAARAAVQSGGVLDVSY 345

Query: 531 IPLPNAQTMLTFVNVTDSV 549
                  +++        +
Sbjct: 346 RMRHKDGSLIWIHLNGQRM 364



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 120/362 (33%), Gaps = 39/362 (10%)

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIY----SELAETTLKCKKLSNHISVFKVLFDSLD 203
           Q+   + +  R+      L  + L+G      SE          +S+   +F+ + + + 
Sbjct: 336 QSGGVLDVSYRMRHKDGSLIWIHLNGQRMGPLSEDTGFYAVFTGISDETRLFQSIANEIA 395

Query: 204 FLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF 262
             V+  D    D+L+ N S     E +    QK                + + +   K  
Sbjct: 396 DGVYVIDKANYDLLYVNESGALFREEQSCAGQKCYKALYGRDAPCAFCTLKTHAPDGKTH 455

Query: 263 CETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVA 318
              V       +  +K               DV++E+    +     E    ++ NL   
Sbjct: 456 SMDVGEPGRFYSTRFKETDWNGIPSYIKYVQDVTEEVRAQKEKERIEEYFQTVVRNLPGG 515

Query: 319 IAIFD--QNRYL--QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +A+    ++  +  ++ +  F EL  + L  +        + E    A   PE  +    
Sbjct: 516 VAVIRCLEDGRMMPEYISDGFAELSGMPLDEVW------RICEKDAMAGVHPE--DRARV 567

Query: 375 KENIFSVYKSSETHKDTWHLP---NGQTLHV-----IVTSNPRGGTIWM-FENLTVQVD- 424
            E +    ++ E + +  +     +G +L V     ++  +     I+  + ++T + + 
Sbjct: 568 NERMAEYIRNDENYCEMAYRLRKGDGSSLWVKNTLSLIQGSGGEKRIYAGYHDITREREE 627

Query: 425 ---LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
              +  KYN L+       D   + + +   +      N     +  T  + L    ++R
Sbjct: 628 QEHMRKKYNDLILQHYRRPD--PDALIIGHCN---VTQNQIIEIMDHTGSDLLKTFGNVR 682

Query: 482 NI 483
            I
Sbjct: 683 EI 684



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 393 HLPNGQTLHVIVTS---NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           H  +G+   +         R   I    ++T +   E +  +L     ET   +  G+ V
Sbjct: 88  HPQSGRVYELSGKIVDWADRPAQIEYIVDITDREREEERSRSLRAELEETFTSIPCGLCV 147

Query: 450 FGPDGRIKL---SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +  DG   L    NPAF  +    E       HIR++  +            +    I  
Sbjct: 148 YQFDGIQILPVFHNPAFYEIMGYSE------EHIRDVEQSTDFLGVHPGDAGMLRQKIQQ 201

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---------TMLTFVNVTDSVRAERALTE 557
                 ++  T  + +D   EY  I L  +              + +V++SVR E+ LT 
Sbjct: 202 AILCNGTMHYTYRVFNDRKGEYCWIRLDGSVKEKEDGTKLLYGVYSDVSESVRLEKELTA 261

Query: 558 KNEALRK 564
            NE L  
Sbjct: 262 ANEKLEH 268



 Score = 39.2 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 22/184 (11%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG------------PDGRIKLSNPAFR 464
           +++T +V  + +   + +     + +L  GVAV               DG  +LS     
Sbjct: 486 QDVTEEVRAQKEKERIEEYFQTVVRNLPGGVAVIRCLEDGRMMPEYISDGFAELSGMPLD 545

Query: 465 SLWKTEENRLSPGTHIRN---IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            +W+  E     G H  +   +    + Y    + +   A  +   D     ++ TL L+
Sbjct: 546 EVWRICEKDAMAGVHPEDRARVNERMAEYIRNDENYCEMAYRLRKGDGSSLWVKNTLSLI 605

Query: 522 SDSVLEYS-------IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             S  E         I      Q  +        ++  R        +   +  +N  ++
Sbjct: 606 QGSGGEKRIYAGYHDITREREEQEHMRKKYNDLILQHYRRPDPDALIIGHCNVTQNQIIE 665

Query: 575 HVSY 578
            + +
Sbjct: 666 IMDH 669


>gi|158338978|ref|YP_001520155.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
 gi|158309219|gb|ABW30836.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
          Length = 811

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/561 (15%), Positives = 206/561 (36%), Gaps = 70/561 (12%)

Query: 280 VRVLNSFGEAGIAI-DVSKEI-----TVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHN 332
             +    G+  +AI D S E+      +        ++  N        D +   +   N
Sbjct: 271 TDLKLIIGQLNLAIKDRSSELDTAYSNLKKSAAQYQDLYDNAPDMYLSVDVDSTKILRCN 330

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
           ++ ++        L        +L+     ++   + +++T+ E                
Sbjct: 331 QTLMKELGYSYPELVGR----SVLDLYHPDSRSDAKESFQTFLEKG-----EVRNGNLLV 381

Query: 393 HLPNGQTLHVIVTS---NPRGGTI----WMFENLTVQVDLETKYNTLVKVQGE------- 438
              +G TL+V + +     + G +      + +++ +  LE +   +     E       
Sbjct: 382 QRKDGTTLNVSLNAQGFRDQQGKLKYSRSSWRDISERKRLENQLKQMNAELEERVKNRTL 441

Query: 439 ------------------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----------E 470
                              ++   +G   +         +  F  +              
Sbjct: 442 ALQIAVQSLKESESRLELALEASGDGWWDWNILTDETSWSTQFYQILGYELEELPSSFKT 501

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
               +    +  I     ++  +     +F   + +  ++ K +    ++++ +      
Sbjct: 502 WQSWTHPDDLLRIKTLLKKHLQDPSIPYVFDYRVRTKSEQWKWISAMGKVVAWND---QG 558

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            PL   + +    ++++  +AE+ L   N  L ++++    F    S++L+ PL  I  F
Sbjct: 559 EPL---RMVGMHHDISERKQAEQELQRINSELIRSNQELGHFAYVASHDLQEPLRKIGSF 615

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           TDLL     G L+    +Y+ YI+  +  +  L++D+L+ + V  G  +L      L+ +
Sbjct: 616 TDLLADRYQGQLDETADRYIRYITDGAMRMQGLIDDLLNYSRV--GRAELKVQPTALSSI 673

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVI 709
           L +VK  +   + +  + I + S   L +   D   + Q+F  ++SNA+ +       + 
Sbjct: 674 LEKVKSDLEKVIEKRQVEIIIDS---LPTVAVDPVLMGQVFQNLISNAIKYCQADRPRIY 730

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           ++A +D   +  SV++NG  I       +F  F    HR +  G G+GL+I +  +  HG
Sbjct: 731 IRATQDQKFWTISVQDNGIGINPQFTDRIFVIFQRLHHREEYSGTGIGLAICKKLVERHG 790

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + + S +      +  +P 
Sbjct: 791 GQIWVDSEEGKGANFSFTLPK 811


>gi|330879671|gb|EGH13820.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 976

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L
Sbjct: 648 ERQTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQIL 707

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++
Sbjct: 708 QRD--TTTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDL 765

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++  A+   E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V L+ +
Sbjct: 766 EKMFASTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGEVV-LRVS 824

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 IF + + G  I  +  + +F  F          GVGLGL+I      L GG +S
Sbjct: 825 YRRETAIFDIVDTGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALS 884

Query: 774 ISSSDEGVTTINCRI 788
           +SS+    T    R+
Sbjct: 885 VSSTPGEGTHFKVRL 899


>gi|205354229|ref|YP_002228030.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858576|ref|YP_002245227.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|205274010|emb|CAR39016.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206710379|emb|CAR34737.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326629351|gb|EGE35694.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 778

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|114705118|ref|ZP_01438026.1| putative sensor histidine kinase transmembrane protein [Fulvimarina
           pelagi HTCC2506]
 gi|114539903|gb|EAU43023.1| putative sensor histidine kinase transmembrane protein [Fulvimarina
           pelagi HTCC2506]
          Length = 774

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 172/418 (41%), Gaps = 34/418 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
             TS+     + +  +++ Q     +           I+++ E   +   +  I L+N  
Sbjct: 350 TRTSSGERHLVGIAMDVSEQQAFAERTKEAHHQLHSAIENIPETFVLCDNEDDIILANSR 409

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           +R+++   E    PGT++  +    SR   ES      ++       E K   G   LLS
Sbjct: 410 YRTVFGLSEEDTKPGTNLAQVMRK-SRKPIESAQVSGSSSKRDDSSSEIKMPDGRWLLLS 468

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA----------------- 565
           +       I +  A      ++ T    +ER LT+   AL +                  
Sbjct: 469 ERRTAEGFIAI-GADITQLKMHQTRLHESERRLTDIIHALSETRSDAERKAAQLEELNHS 527

Query: 566 -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYI 613
                         K +F+ ++S+ELR+PL  I+GF+D+++   LG + + K + Y   I
Sbjct: 528 FRIEKNKAEAASRAKTTFLANMSHELRTPLNAILGFSDIMRQQMLGPIGSEKYTGYAHDI 587

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL L++DILD+  ++ G   +      L + + E  + I   +    I + V  
Sbjct: 588 HESGEFLLQLIDDILDMQKIETGRTTMLRRIFDLTEAVAESARMIEASVARRQIDLVVEQ 647

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             KL +  ADR+ + QI   ++SNA+ FS  G  V +     +G  + S+ + G  I + 
Sbjct: 648 PEKL-NIYADRRAVTQILMNLMSNAVKFSDAGGEVRVSVKERSGAVLLSITDRGEGISQC 706

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +   F          ++G GLGL+I  S   LHGG   I+S+    T +  R+P
Sbjct: 707 NLAKIGRPFEQTESEWTRTKKGTGLGLAIARSLTELHGGRFRIASTLGEGTIVAIRLP 764



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 106/359 (29%), Gaps = 43/359 (11%)

Query: 6   ATIGIGKGIEICTLFSCKIAVF-----GTIAGMLLTTIIP----IILLIRQRNSLAKKVN 56
           +++ +  G+ + T+   +              + L ++       I+L   R +      
Sbjct: 186 SSMMLADGLGLGTIVQIERPALSAWREALAVNVTLFSLTSFVVLAIVLAYFRQASRANEA 245

Query: 57  ETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE 116
           +  +   E  + +    SL       + +WD               + + ++  +LL F 
Sbjct: 246 Q--TAYLETHELVDTALSL-----GRSGLWD--------WNVTRGEVQLSRSLYELLGFS 290

Query: 117 NWLKFHHYIKLSKAT------------EKLRKEGQSFD--LVAETQNDCAIKIEGRVSGS 162
                  + +L                  +      FD       ++   + +      +
Sbjct: 291 PKTASIGFAELEHRLHPADIGVKHRLCRVVVGNVDRFDKTFRLRHRDGHFVWLRAHAEAT 350

Query: 163 CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY 222
                   L GI  +++E     ++            +++       D   DI+ AN  Y
Sbjct: 351 RTSSGERHLVGIAMDVSEQQAFAERTKEAHHQLHSAIENIPETFVLCDNEDDIILANSRY 410

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           +          +     ++ + K          S       ++ S ++  + +   +   
Sbjct: 411 RTVFGLSEEDTKPGTNLAQVMRKSRKPIESAQVSGSSSKRDDSSSEIKMPDGRWLLLSER 470

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA--IFDQNR---YLQFHNRSFV 336
             + G   I  D+++      +L  +   L ++  A++    D  R    L+  N SF 
Sbjct: 471 RTAEGFIAIGADITQLKMHQTRLHESERRLTDIIHALSETRSDAERKAAQLEELNHSFR 529


>gi|307331825|ref|ZP_07610925.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306882522|gb|EFN13608.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1484

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 17/268 (6%)

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            T        +  R+   L EK   L  A + K+ F+ ++S+ELR+PL +++    LL  +
Sbjct: 915  TTELRQRSNELQRSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADN 974

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              G L+ ++ Q+   I  S + LL L+NDILDL+ ++AG M +    + L  +L+ V  +
Sbjct: 975  PEGRLSGQEVQFAATIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLVKILDYVNAT 1034

Query: 658  IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                  +  +  ++     +     +D QRL QI   +LSNA+ F+S G  V L+  R  
Sbjct: 1035 FRPLAVDRRLSFEIAVGEDVPREMFSDEQRLQQILRNLLSNALKFTSSGG-VTLRVERTP 1093

Query: 717  GD-------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
            G                F+V + G  IP +    +F  F  +      +  G GLGLSI 
Sbjct: 1094 GAEFEEEALRSADAVIAFAVTDTGIGIPPEKLPVIFEAFQQSDGTTSRKYGGTGLGLSIS 1153

Query: 762  ESFINLHGGHVSISSSDEGVTTINCRIP 789
                 + GG +   S     +     +P
Sbjct: 1154 REIAGMLGGRIVAESELGVGSRFTLYVP 1181


>gi|300694191|ref|YP_003750164.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
 gi|299076228|emb|CBJ35542.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
          Length = 675

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 156/380 (41%), Gaps = 26/380 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---SNPAFRSLWKTEENRLSPGTHI 480
                   L+     ++      ++++  D  +      NP F      + + L   T  
Sbjct: 153 QQRVSQQRLLAALQASL------ISLYDVDNTMHFTWVHNPVF----GLQPHELLGRTVR 202

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-----IIPLPN 535
                  +    E+    +     T  +   +       +    V+        II L N
Sbjct: 203 EVFGRRAASRLTEAGQQVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTN 262

Query: 536 AQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           A   +T     ++ RA+   A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  L
Sbjct: 263 AVIDITERRQAEARRAQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQL 322

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             + +E I  S+   ++L++D+LD++ + +G + L    + L D+L  
Sbjct: 323 LAMRPYDEAT--FRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLER 380

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +++I     +  I + +     +     D  RL Q+F  +L+NA+ F+ +G  + +   
Sbjct: 381 ARETIEPMARQKQIAVDMECQP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVH 439

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                 + +V++ G  I       +F+RF        RR  G+GLGL+I +  + LH G 
Sbjct: 440 ASAEGLVATVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGR 499

Query: 772 VSISSSD-EGVTTINCRIPS 790
           ++ +SS  +  TT+   +P 
Sbjct: 500 ITAASSGTDLGTTMAVTLPL 519


>gi|237653646|ref|YP_002889960.1| PAS sensor protein [Thauera sp. MZ1T]
 gi|237624893|gb|ACR01583.1| PAS sensor protein [Thauera sp. MZ1T]
          Length = 2109

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 23/374 (6%)

Query: 429  YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                 +      ++  EG+    PDGR   +NPA   L   +    S    +  I    +
Sbjct: 1476 LQQSEQAYRSLYENAIEGIFRVDPDGRFLSANPALVRLLGHD----SAAEFLTGITDVST 1531

Query: 489  RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP---LPNAQTMLTF--- 542
            + +  ++    F   + + +++    +        S +E SI     L +   +  +   
Sbjct: 1532 QCFARAEDQRRFLGRL-NMEEKVVGFETRWRRRDGSEVEVSISARRVLDDGGRLRCYEGS 1590

Query: 543  -VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              ++ +    ERA     E    A   K+ F+  +S+E+R+P+  I+G   LL  S L  
Sbjct: 1591 LTDIGERKAKERA-ELARERAEAASRAKSDFLAAMSHEIRTPMNGILGMAQLLARSGLAP 1649

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                Q+++V+ I AS + LL +++D+LD + ++AG + L  +     + L  ++  +AT 
Sbjct: 1650 G---QAEWVDAIRASGSTLLGILDDVLDFSKIEAGQLTLESAPFSPAEALAALRPMLATM 1706

Query: 662  MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDN 716
              +  + +++  D  L    + DR+ L QI   +  NA+ F+++G   +    L A    
Sbjct: 1707 SAQKGLVLRLEIDPALPGGVLGDRRALHQIVLNLAGNAVKFTARGFVAVRARCLPARAGR 1766

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                  V+++G  I E+  + +F  F        RR  G GLGL+I    ++L GG + +
Sbjct: 1767 CRLGLEVEDSGIGIAEEAQRRIFTEFTQADGSITRRFGGTGLGLAICRRLVDLQGGSLGV 1826

Query: 775  SSSDEGVTTINCRI 788
             S     +T +C +
Sbjct: 1827 RSRPGEGSTFSCEL 1840



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 109/360 (30%), Gaps = 53/360 (14%)

Query: 111  DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS 170
             L  +  W +        +    L +   SFDL +  +   AI  E  +       R+L 
Sbjct: 1277 QLEEYGLWPRPPGLAGAGEMQGGLDETNHSFDLSSVIEASQAISDE--IVLERLIERLLQ 1334

Query: 171  LDGIYSELAETTLKCKKLSN-HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            L    +      L   +  +  +     L            + G  L  +++ +  T   
Sbjct: 1335 LALTSAGAQRGALALSRDRHLRVEAIAGL------------EEGSTLMCSLALEAATSRV 1382

Query: 230  GIVFQKAIGESRK--LFKEEIKKRMISSSALEKNFCET----VSTLEHGN---------- 273
             +     +  + +  +  +  +++M +     ++        +  L HG           
Sbjct: 1383 PVSVLNYVARTGEALVLGDAPRQQMFAHDPYIRSQAPRSLLCMPILYHGELTALLYLEHR 1442

Query: 274  --NKSYKIVRVLNS---FGEAGIAIDVSK-EITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
                 +   R+        +A I+I+ +K  + +         +  N    I   D +  
Sbjct: 1443 LGRDIFDQQRLKTLRILAAQAAISIENAKLYLGLQQSEQAYRSLYENAIEGIFRVDPDGR 1502

Query: 328  LQFHNRSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
                N + V L   D  A   T  ++     F R+        + + +     ++ +   
Sbjct: 1503 FLSANPALVRLLGHDSAAEFLTGITDVSTQCFARAE-------DQRRFLGR-LNMEEKVV 1554

Query: 387  THKDTWHLPNGQTLHVIVTSN---PRGGTIWMFE----NLTVQVDLETKYNTLVKVQGET 439
              +  W   +G  + V +++      GG +  +E    ++  +   E       + +  +
Sbjct: 1555 GFETRWRRRDGSEVEVSISARRVLDDGGRLRCYEGSLTDIGERKAKERAELARERAEAAS 1614


>gi|223984863|ref|ZP_03634970.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM
           12042]
 gi|223963156|gb|EEF67561.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM
           12042]
          Length = 989

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 156/388 (40%), Gaps = 17/388 (4%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTE 470
            + +    +   + E K     ++     +++     ++ P  R +++ +   R L+  E
Sbjct: 305 VLLLSRQASSSREQERKRRE--QLFQIISENVDFAFLLYTPSKRKVEMLSENVRVLFNIE 362

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            +      H   +  +C     +  G       +     +R   Q          +E   
Sbjct: 363 PD--DAVRHPERLFLSCGMPEQDPAGRAFLNGQLN--QRQRCEYQQGTANELQRWIEIYF 418

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+   Q +      T      + L +     ++ ++ +  F   +S+++R+P+  IIG 
Sbjct: 419 IPVHADQYLAVLHETTPEHHMRQDLADALRQSQENNQARTVFFSSMSHDIRTPMNGIIGM 478

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T + +     +   K +  ++ IS +S  LL+L+N++LD++ +++G + L    + L+ L
Sbjct: 479 TTIAQAHL--NEPEKVAHCLDKISLASQHLLDLINEVLDMSRIESGKISLKKEPVNLSQL 536

Query: 651 LNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++V   +   + +    + + S      + + D   L +I   +LSNA+ ++     + 
Sbjct: 537 ISDVLILVKPDLTKKRQTLHIRSSALDYDTVLGDTLHLQKILLNLLSNAVKYTPPEQDIT 596

Query: 710 LKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVE 762
           +    +         IF+V++ G  +  +    +F  F         Q  G GLG++I +
Sbjct: 597 IGLHEEPDGDDKIKVIFTVEDTGIGMTPEFLTRIFTPFERAQDSRISQISGTGLGMAITK 656

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
           + +++  G + + S     +     +P 
Sbjct: 657 NIVDMMSGTLQVESQLGVGSKFTVTLPL 684


>gi|187933765|ref|YP_001886045.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721918|gb|ACD23139.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 664

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 168/386 (43%), Gaps = 22/386 (5%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T++ +L  + +   K     ++  ++  A+   DG        F  +       L     
Sbjct: 257 TLKTELNKR-SESEKELELFLETATDLCAIAREDG-------YFAKVTDNWTKVLGWSKE 308

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-----LSDSVLEYSIIPLP 534
              I   C+   ++ D   ++  I  +    +    G ++          ++E++   + 
Sbjct: 309 -ELINMKCTDLIHKDDLPRIYKLIKLAQGYSKWKYVGFIDKCLCKNGEYRIIEWNWSYIN 367

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +T +       +        ++ E     + +K  F  ++S+E ++PL  I+    L+
Sbjct: 368 GGKTFIMTGKDITNYNKLALENKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLM 427

Query: 595 KT--SKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           ++   K   +  KQS  +YV  +  +S  LL LVN+++D+  +D G  K+N     + ++
Sbjct: 428 ESYIKKFDDMLEKQSMSKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNV 487

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+  S+A         I   +D +      D +++ +I   ++SNA+ ++ K   + +
Sbjct: 488 IEEIVLSVAEYTKNKERNIIFDTDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKV 547

Query: 711 KAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
             + +  + +   SVK+NG  IP++  + +F RF    +       G G+GLS+V+S + 
Sbjct: 548 NISTNLHDNEVTISVKDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVE 607

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
           +H G + I+S ++  T I   +P K+
Sbjct: 608 MHEGKIWINSEEDEGTEIIFTLPIKK 633


>gi|89896368|ref|YP_519855.1| hypothetical protein DSY3622 [Desulfitobacterium hafniense Y51]
 gi|89335816|dbj|BAE85411.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 592

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 148/385 (38%), Gaps = 38/385 (9%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G        L+ ++        L +    +TID L+EG+     +G     NP+ + ++ 
Sbjct: 232 GELAHSLNYLSARLSETISALELERNRLKQTIDGLAEGIVAIDNEGNFTHINPSIQRIFG 291

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                       +N            + W+ F A++       +SLQ         +L  
Sbjct: 292 ------------KNPGEGRMSLIPSQELWEDFDAVLAQGYTIVRSLQ-----WKQMLLRV 334

Query: 529 SIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +I PL +     A  +  F ++T+S R E              + +  +V +VS+ELR+P
Sbjct: 335 TICPLEDETHHIAGVVGLFRDITESERLE--------------QTRREYVANVSHELRTP 380

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           ++ +   ++ L    +    +K ++Y  ++   +  L  L+ND+L L+ + +   +++  
Sbjct: 381 VSALRALSETLADGMVSDEETK-NRYYNHMLHETMRLTRLINDLLTLSRLQSHTEQVHTE 439

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             ++N++   V +       +  +R            +++   + Q+   +L NA+ ++ 
Sbjct: 440 AFLINEVTGSVAERYKPLAQKKGLRFDYSPLVHDLKVMSNMDLVEQVLIILLDNAIKYTQ 499

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
            G  + L    D      SV + G  I  +    +F RF         +G GLGL+I   
Sbjct: 500 SGGRISLGTVLDKDRVKVSVADTGMGIAPEDLPHIFERFYKADKAHSTQGTGLGLAIAFE 559

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
                G  + + S     +T    +
Sbjct: 560 ISQRLGEEIYVESHLNEGSTFTFTL 584



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 28/256 (10%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +  +     + +  L   I   D        N S   ++         NP    +    
Sbjct: 251 ALELERNRLKQTIDGLAEGIVAIDNEGNFTHINPSIQRIFG-------KNPGEGRM---- 299

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
              + +P Q  W+ +   +   Y    + +    L       +   ++   G + +F ++
Sbjct: 300 ---SLIPSQELWEDFDAVLAQGYTIVRSLQWKQMLLRVTICPLEDETHHIAGVVGLFRDI 356

Query: 420 TVQVDLETKYNT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           T    LE             ++     +  LSE +A    DG +       R        
Sbjct: 357 TESERLEQTRREYVANVSHELRTPVSALRALSETLA----DGMVSDEETKNRYYNHMLHE 412

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +     I ++  T SR  + ++     A +I             L        +YS  P
Sbjct: 413 TMRLTRLINDLL-TLSRLQSHTEQVHTEAFLINEVTGSVAERYKPLAQKKGLRFDYS--P 469

Query: 533 LPNAQTMLTFVNVTDS 548
           L +   +++ +++ + 
Sbjct: 470 LVHDLKVMSNMDLVEQ 485


>gi|194365514|ref|YP_002028124.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348318|gb|ACF51441.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 1037

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 3/244 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L      K+ F+ ++S+ELR+PL + +    LL  +K G+L  +Q +Y 
Sbjct: 347 AQGQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTEEQVKYA 406

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S+  LL L+NDILDL+ ++AG ++L    +V++ +L  ++++      +  + ++
Sbjct: 407 RAILSSNNDLLALINDILDLSRIEAGHVELADEVVVVDSVLQRLRETFEPMARQKGLALE 466

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D    +  VAD QRL QI   +L+NA+ F+  G   +   A  NG   F V + G  
Sbjct: 467 IEADALAPTQLVADNQRLQQILKNLLANALKFTEHGKVSLHVRAGGNGRVRFDVCDTGIG 526

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +    +F  F       +RR  G GLGLSI        GG + + S     +     
Sbjct: 527 IAREQLPVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIQVDSEPGRGSCFILE 586

Query: 788 IPSK 791
           +P +
Sbjct: 587 LPLQ 590


>gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
 gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
          Length = 811

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 171 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNTTQRDHLNTI 227

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L++V   +A   H+  + + +  
Sbjct: 228 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNI 287

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNG 727
              +  + + D  RL Q+ + ++ NA+ F+ +G  + +   +             +++ G
Sbjct: 288 KNDVPDNVIGDPLRLQQVITNLVGNAIKFT-EGGNIDILVEKRALSNTKVQIEVQIRDTG 346

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T  
Sbjct: 347 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFW 406

Query: 786 CRI 788
             I
Sbjct: 407 FHI 409


>gi|330957172|gb|EGH57432.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 595

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 148/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+ L           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESCLGQ---------SLGEALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+ S+  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDSESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSVEALLEEAKARFEEQALEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 EVQEPMPRLHADQSQLERVLDNLLDNALRHTPPKGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|254442957|ref|ZP_05056433.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257265|gb|EDY81573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 799

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 138/307 (44%), Gaps = 17/307 (5%)

Query: 498 DLFAAIITSFDDERKSLQGTLELL----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           D     + + D     +QG  E+     S  V    +  L + +T    V  TD  R   
Sbjct: 208 DQAERAVRTGDRIDLPIQGPKEIRQLYSSIQVFANQLHSLVDERTQKLAVANTDFARQAE 267

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
              +  E    A+E K++F+ ++S+E+R+P+  I+G   +L+       +  Q + V   
Sbjct: 268 IAKQLAEKANAANEAKSTFLANMSHEIRTPMNGILGMLIILEDIIS---SKDQEELVLSA 324

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++N+ILD + ++A  ++L    I + D+     + IA K HE +I++    
Sbjct: 325 KESAHSLLKIINEILDFSKIEANAVELESIPINIADVAYGATELIALKAHEKDIQLITQV 384

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNN 726
           D  L  S V D  R+ Q+   +L NA+ F+  GS V L+ AR              + + 
Sbjct: 385 DPTLHDSLVGDPHRIRQVCINLLGNALKFTENGS-VRLRVARARTQQEGSSRIRIEISDT 443

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G+ IP++  K++F  F        R   G GLGLSI    + L GG + + S     +T 
Sbjct: 444 GTGIPKEKIKTLFQAFSQVDSSTTRVYGGTGLGLSISRKLVELMGGVIGVESEINKGSTF 503

Query: 785 NCRIPSK 791
              IP K
Sbjct: 504 WMEIPLK 510


>gi|83311738|ref|YP_422002.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946579|dbj|BAE51443.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 638

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 135/326 (41%), Gaps = 18/326 (5%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            +  +  +                  +   + L   ++T FD  R              +
Sbjct: 67  CRFCKMPVMMAEEGETSLEFEHFNDRDDHWYQLRETMLTWFDGRRAKYS----------I 116

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              I  L   Q  L   +   +++  R L +     R A+  K+ F+  +S+E+R+P+ +
Sbjct: 117 AVDISALKGFQNALAEAHAELALK-NRDLEKAVTQARDAERAKSEFLAVMSHEIRTPMNS 175

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G   LL    L + +    + +  +  S   LL ++NDILD + ++A  ++       
Sbjct: 176 ILGMVHLLMDRPLAAED---REKLSVVHDSGAALLGIINDILDFSRLEADGVQFENLPFH 232

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           L + +  V   +  +  E ++ + +    +L  +V  D  RL Q+   ++ NA+ F+ +G
Sbjct: 233 LGNTVEGVVSLLRGRASEKDLTLVLDGPAQLPGWVSGDGARLRQVLINLIGNAIKFTDQG 292

Query: 706 STV-ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
             V  L+ + D   + F+V + G  +     +S+F  F        RR  G GLGL+I +
Sbjct: 293 GIVLRLRRSDDGNGYEFAVIDTGIGLDAAQAQSLFQPFHQADASISRRFGGSGLGLAICK 352

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
             IN  GG + + S+    +    R+
Sbjct: 353 KLINAQGGKIGVDSTKGLGSRFWFRL 378


>gi|311234521|gb|ADP87375.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 975

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 105/656 (16%), Positives = 212/656 (32%), Gaps = 91/656 (13%)

Query: 213 GDILWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            ++L+ N S        +G    + +             R+  +      +      L  
Sbjct: 44  HELLFVNRSLTMAVGAWQGRKCYELLQGRDTPCPFCTSGRLQRNPERPVVWEWRNPRL-- 101

Query: 272 GNNKSYKIVRVLNSFGEA-----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD-QN 325
              + ++ +     + +       +A+D++      + L      L     AI + D + 
Sbjct: 102 --GRWFRCIDRCIHWPDGRPVRYELAVDITDMREAQEDLLRFRAALDASAEAIFLVDLEE 159

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
                 N     +   D   L                 +   Q+        +    ++ 
Sbjct: 160 GRFLDVNSGACTMLGYDRDTLLGLGLCGIRRSMAADGCR---QILDSIAAGAVLENVETV 216

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV----QVDLETKY----------NT 431
             H+D   +P      ++         I +  +++     +  +E +Y            
Sbjct: 217 YLHRDGTFVPVEVGARLVDRVGGPRLAIMVARDVSEKRKARRAMEVRYLYEHVLSSCARE 276

Query: 432 LVKVQGE------TIDHLSEGVAVF---------GPDGRIKLSNPAFRSLWKTEENRLSP 476
           L+            +  L +G               +GR+   +  + S        L  
Sbjct: 277 LLSRSCSESTLVGVLGALRQGAGACRAYIFENYEDAEGRL-CCSQRYESSAPGVRPELDN 335

Query: 477 GTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQG-------TLELLSDSVLE 527
                 I A+ +    +    G  +   +      ER  LQ         L + +  V  
Sbjct: 336 PALQNIIYASEAPNWLHELRKGRAVVGPVADQPLPERDVLQAQGIRSLLVLPIFARGVW- 394

Query: 528 YSIIPLPNAQTMLTFVNVT---------------DSVRAERALTEKNEALRKADEIKNSF 572
              +   + +T  T+                   +  RAE  L   ++   +A   K+ F
Sbjct: 395 CGFVGFDDTRTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVF 454

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  IIG T+L   +    ++    + +  +  S+  LL +VND+LDL+ 
Sbjct: 455 LANMSHEIRTPLNAIIGLTEL---TLQEPISQGVGENLRGVLHSAEALLAVVNDLLDLSR 511

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIF 691
           V++G + L       + L   V + +        +  ++ I+     +   D  RL Q+ 
Sbjct: 512 VESGRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVL 571

Query: 692 SKILSNAMDFSSKGS---TVILKAARDNGD-------------FIFSVKNNGSSIPEDMC 735
             ++ NA+ F+ +G    TV       +                 F+V + G  IP D  
Sbjct: 572 LNLVGNALKFTDEGGVSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQ 631

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F  FV       RR  G GLGL+I    + + GG + + S     +   C +P
Sbjct: 632 ACIFESFVQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVP 687


>gi|156932728|ref|YP_001436644.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530982|gb|ABU75808.1| hypothetical protein ESA_00517 [Cronobacter sakazakii ATCC BAA-894]
          Length = 919

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTDLTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISV 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSV--KNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  I+   R   N      V  ++ G 
Sbjct: 395 RHDVPDNVIGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|314934942|ref|ZP_07842301.1| sensory box histidine kinase VicK [Staphylococcus caprae C87]
 gi|313652872|gb|EFS16635.1| sensory box histidine kinase VicK [Staphylococcus caprae C87]
          Length = 610

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 159/399 (39%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 228 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRV 287

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++N     +    +  +  G ++  +    + +       D       SF  +    +G
Sbjct: 288 RIANDMALKMLGLAKEDV-IGYYMLGLLNLENEF-----SLDEIQENNDSFLLDINEEEG 341

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++ S +      +     +    +VT+  + ER               +  FV +V
Sbjct: 342 IIARVNFSTIVQQTGFV--TGYIAVLHDVTEQQQVERE--------------RREFVANV 385

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+        S   Q++      +  ++ LVND+L L+ +D  
Sbjct: 386 SHELRTPLTSMNSYIEALEEGAWQD-ESLAPQFLSVTREETERMIRLVNDLLQLSKMDNE 444

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 445 SDQITKEIVDFNMYINKIINRHEMAA--KDTTFVREIPQQTIFTEIDPDKMTQVFDNVIT 502

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 503 NAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 562

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 563 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 601


>gi|226954327|ref|ZP_03824791.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
 gi|226834905|gb|EEH67288.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
          Length = 936

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  
Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRK 333

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 334 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYAE 393

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    V D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 394 NIPQHVVGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEDDDIGQCLLHFSVQDSGIG 452

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 453 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMRGQIGFEDNQERAPTEKGS 512

Query: 783 TINCR 787
           T    
Sbjct: 513 TFWFT 517


>gi|254226158|ref|ZP_04919754.1| sensor histidine kinase FexB [Vibrio cholerae V51]
 gi|125621326|gb|EAZ49664.1| sensor histidine kinase FexB [Vibrio cholerae V51]
          Length = 785

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis
           C6786]
          Length = 925

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 166/397 (41%), Gaps = 28/397 (7%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQ------GETIDHLSEGVAVFGP-DGRIKLSNPAF 463
           G +W+F     +  L   Y    ++          +     G+ +    DG + L N A 
Sbjct: 288 GMLWIFAIQFDRKGLIPNYRRAQRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAM 347

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L              +      +R   +S    L    +    DE   +     +++ 
Sbjct: 348 LELSARTGGEPLHIQLWKAYRNATAR--PDSKDSALLQHDLAIERDESNPIYLQANVVAA 405

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                ++        + T ++++    +E  L E   A  +A++ K++F+  +S+E+R+P
Sbjct: 406 RYRGVNV-------QLCTLLDISLRKESELKLEEARIAADQANKAKSTFLATMSHEIRTP 458

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIG  +LL+ S    L+ +QS+ ++ + + S  LL+++NDILDL+ V++G M L   
Sbjct: 459 LNAIIGNLELLRRS---PLSMRQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENI 515

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              ++ LL ++  + A       + +   + +G    +  D  R+ QI S ++ NA+ F+
Sbjct: 516 PFDIHALLQDIVDAYAPLAESKGLELFSSVGEGIANYYSGDPARIHQILSNLIGNAIKFT 575

Query: 703 SKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
             G  + +   R      N      V + G  I  D   ++F+ +        RR  G G
Sbjct: 576 DSGH-ISIDVHRAKTGPGNSAIEIWVSDTGIGIQPDRIATLFDVYTQADASIHRRFGGSG 634

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL + +    + GG + I S  E  TT+   +P  E
Sbjct: 635 LGLPLCQRLATIMGGSIEIDSLPEFGTTVTVVLPLHE 671


>gi|237746831|ref|ZP_04577311.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229378182|gb|EEO28273.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 872

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 134/283 (47%), Gaps = 15/283 (5%)

Query: 519 ELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           E  S   +  SI P+        + + +  +++D  +A++ L +      KA+E K+SF+
Sbjct: 291 ETGSKRWISISIYPVREKDNSQLRCIFSITDLSDIKQAQQVLKDALFNAEKANEAKSSFL 350

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  IIG T +  T  + +  +K    +  I+ SS  LL L+ND+LD++ +
Sbjct: 351 SRMSHEIRTPMNAIIGMTTIAAT--VMNDRAKLENCLSKIALSSRHLLMLINDVLDVSKI 408

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G M +      L +L+  +   I ++        +++++ +  +   D  RL QI   
Sbjct: 409 ESGKMTVTKDPFELGELMQNIGSIIYSQAITKKQHFEIVTNVRHETLRGDILRLNQILIN 468

Query: 694 ILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NA 746
           ILSNA+ F+ +   V L+         D     F++ ++G  +  +    +F  F   N 
Sbjct: 469 ILSNAVKFTPENGRVRLQVEEIAKRHTDQIWLRFTISDSGRGMSPEFLNRLFMPFEQEND 528

Query: 747 HRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G+   G GLG+ I ++ + L  G +++ S     T     I
Sbjct: 529 GSGKLVEGTGLGMPITKNLVTLMNGTINVESVPGKGTVFTVEI 571


>gi|167590124|ref|ZP_02382512.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ubonensis Bu]
          Length = 861

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 148/377 (39%), Gaps = 31/377 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     ++    I+    G+ +    DGR+ L++                G   R +AA
Sbjct: 370 QRVFDSEELCRNVIEMAPIGLGLISRSDGRLMLAS------GTLTNMIARCGDESRTLAA 423

Query: 486 TCSRYYNESDGWDLFAAIITSF------DDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
               +Y            + +       DD  + L            +  I+        
Sbjct: 424 QVVAHYEAFLACGAPEGTMQAVLPLAGQDDAWRHLDIGARGARYQGEDVLIV-------- 475

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              V+VT   R  R L E   A   A+  K+SF+  +S+E+R+PL  I+G  +LL+ S  
Sbjct: 476 -AAVDVTAKRRIVRKLEEAVRAADSANAAKSSFLAAMSHEIRTPLNVILGNLELLERS-- 532

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L+  Q   V+ +  S+  LL LVNDILD + ++AG M +      +  ++     + A
Sbjct: 533 -ALDVSQHGRVQTLRTSAGSLLALVNDILDFSKIEAGAMTVESIEFGVMTVIERELSAFA 591

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD 715
                  +++    D  +      D  R  Q+F  +L+NA+ F+ +G     V +  A  
Sbjct: 592 PIAKAKGLQLFCEMDASISQRMRGDPMRFAQVFGNLLNNAIKFTDEGRVTARVSIVDACG 651

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
             +    V++ G  I  +    +F  F        RR  G GLGL++    +   GG +S
Sbjct: 652 APELAVEVEDTGIGISPEHQHKLFKAFSQVDASITRRYGGTGLGLALCARLVTAMGGRIS 711

Query: 774 ISSSDEGVTTINCRIPS 790
           ++S     +    R+P 
Sbjct: 712 VASEPGAGSCFTVRLPL 728


>gi|83815367|ref|YP_446672.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756761|gb|ABC44874.1| sensor histidine kinase with a PAS domain [Salinibacter ruber DSM
           13855]
          Length = 720

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 94/549 (17%), Positives = 202/549 (36%), Gaps = 67/549 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV-------ELWEIDLAFLAT 348
           ++   +        +++  L + +A+FD     Q+ N   V       +L  +       
Sbjct: 168 TQRDELRRSRDQQRQMIEQLPMEMAVFDTEARFQYVNERAVGDPAVREQLIGLTNEGYCR 227

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL------PNGQTLHV 402
               D  L   R  +   E +  K+    +    ++ E  +    +      P+G    V
Sbjct: 228 RHDLDVALGRRRDESIR-EVVETKS-INRLRETIETDEGPRHYLRIHVPITDPDGTVRKV 285

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD---GRIKLS 459
           +      GG      ++T + + E       +      +   + +     +    RI   
Sbjct: 286 VG-----GGL-----DITERKERERDLRARQEKIEALYEATKQLLRAGSQEEVSDRIHWV 335

Query: 460 NPAFRSLWKTEENRLSPG---THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
                         L  G         A+  S    E+           +       +  
Sbjct: 336 LKEVFDYPFAHTGFLEDGLIVPERTEAASGLSLPMPEARPPQENMVAGQALRSGEAVVSE 395

Query: 517 TLELLSDSV-----LEYSIIPLPNAQTMLTFVNVT----------------------DSV 549
           T++ L+DS+        + +P+     ++                            D +
Sbjct: 396 TIQSLADSIDYGDLRSAASVPIGGHGAIVVGKADETTYRQFNLHLLELLGGYAALVLDRL 455

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-------LLKTSKLGSL 602
           R E AL +  EA  +A  +K++ + ++S+E+R+PLT+IIGF++       LL+ +   + 
Sbjct: 456 RREAALRDAKEAAEEASRLKSTMLANMSHEIRTPLTSIIGFSETIEEEADLLEATPADAN 515

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            S  S++   I  +   LL+ ++ +L+L+ ++AG M L    I L++L   +   +  + 
Sbjct: 516 PSTLSRFAHLIGKNGRRLLDTLDGVLNLSRLEAGQMDLAAERIPLDELAKGLVDELHPQA 575

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  +  +V    +      DR  +      ++SNA+ ++ +G  V +++ R     +  
Sbjct: 576 EEAGVHCEVEKTPRPVVARVDRGGMQIALRNLISNAIKYTEEGGRVRVRSYRAEDAAVVE 635

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  +  D  + VF  F   +     +  G GLGL++ +  I    G + + + ++ 
Sbjct: 636 VEDTGIGMDADTVEHVFEPFRQASEGLNREYEGTGLGLAVTKQVIEKMNGDIEVDTEEDA 695

Query: 781 VTTINCRIP 789
            T +  R+P
Sbjct: 696 GTCVRLRLP 704


>gi|310768138|gb|ADP13088.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia sp. Ejp617]
          Length = 992

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 159/370 (42%), Gaps = 37/370 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L       L+    +R     
Sbjct: 393 RLEEQEQFNRKIVASAPVGICILRTSDGTNILSN----ELAHNYLTLLTQEDRLRLTEMI 448

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFV 543
           C +  N       F  ++T                S++ L+ S +          +   V
Sbjct: 449 CGQQVN-------FVDVLTG---------------SNTNLQISFVHSRYRNENVAICVLV 486

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V+  V+ E++L E  +   +A + K+ F+  VS+ELR+PL  IIG  DLLKT    +L 
Sbjct: 487 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTK---ALP 543

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     V  ++ SS++LL +++DILD + +++  +K+        +++  +  +    + 
Sbjct: 544 AGADSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMVV 603

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  + +    D  +  +   D  RL Q+ S +L+NA+ F+  G  +IL+A        F 
Sbjct: 604 KKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGG-IILQAYVKGDYLAFR 662

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  IP      +F+ F       Q   +G GLGL+I E  +N+  G + + S    
Sbjct: 663 VRDSGVGIPAKEITRLFDPFFQVGSGVQLHFQGTGLGLAICEKLMNMMDGDIEVESEPGM 722

Query: 781 VTTINCRIPS 790
            +    RIP 
Sbjct: 723 GSQFIVRIPL 732


>gi|282862260|ref|ZP_06271322.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282562599|gb|EFB68139.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1815

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 135/315 (42%), Gaps = 25/315 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              +     D  + L+   + L  S  E      L   Q     V  T+   A + L E+ 
Sbjct: 1273 QELTEQLRDRSQELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERA 1332

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E L  +   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ ++ E I  + + 
Sbjct: 1333 EQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAESNLSPKQVEFAETIHGAGSD 1392

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
            LL L+NDILDL+ V+AG M ++ + I L  L++ V+ +      E  +   V    +L  
Sbjct: 1393 LLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPA 1452

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------------------KAARDNGD 718
            +   D QRLLQ+   +LSNA+ F+  G+  ++                         + D
Sbjct: 1453 TLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPNSIREHLLEAGSLHDADAD 1512

Query: 719  FI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I FSV + G  I       +F  F         +  G GLGLSI      L GG +  +
Sbjct: 1513 LIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAA 1572

Query: 776  SSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 1573 SEPGRGSTFTLYLPL 1587


>gi|229016308|ref|ZP_04173254.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
 gi|229022547|ref|ZP_04179077.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228738742|gb|EEL89208.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228744955|gb|EEL95011.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
          Length = 896

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 478 TKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFM 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I  +  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|207724848|ref|YP_002255245.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
 gi|206590073|emb|CAQ37034.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
          Length = 675

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 152/376 (40%), Gaps = 20/376 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---SNPAF----RSLWKTEENRLSPGTH 479
           T+     +     +      ++++  D  +      NP F      L       +     
Sbjct: 152 TQQRVSQQRLLAALQASP--ISLYDVDNTMHFTWVHNPVFGLQPHELLGRTVREVFGRRA 209

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +     R         +  A       +R      +  L D   E  II L NA   
Sbjct: 210 ASRLTEAGQRVIATGSPTRVEFAFRRRHT-QRVVYDVVVMPLRDDTGE--IIGLTNAVID 266

Query: 540 LTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +T     ++ R +   A +   E   +A  +K+ F+  VS+ELR+PL  ++G+  LL   
Sbjct: 267 ITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR 326

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 +   + +E I  S+   ++L++D+LD++ + +G + L    + L D+L   +++
Sbjct: 327 PYD--EAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARET 384

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I     +  I I       +     D  RL Q+F  +L+NA+ F+ +G  + +       
Sbjct: 385 IEPMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQALPE 443

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + +V++ G  I       VF+RF        RR  G+GLGL+I +  + LH G ++ +
Sbjct: 444 GLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAA 503

Query: 776 SSD-EGVTTINCRIPS 790
           S+     TT+   +P 
Sbjct: 504 SNGANLGTTMAVTLPL 519


>gi|83815587|ref|YP_444323.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756981|gb|ABC45094.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
          Length = 650

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/537 (16%), Positives = 206/537 (38%), Gaps = 46/537 (8%)

Query: 279 IVRVLNSFGEAGIAIDVS------KEITVNDQLTHTYEILHNLTVAIA---IFDQNRYLQ 329
           ++++    G AG+ +  S            D       +L  L V +    +  +   + 
Sbjct: 121 VLQLTTVGGIAGLCVGYSTAQLKEATRDAQDDRNRLENLLDGLPVPVVHGRVEGETLNIL 180

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN--KLPEQLNWKTWKENIFSVYKSSET 387
             N +F   +  D          + L + +R     +  E++N +   E I       E 
Sbjct: 181 AANAAFERAFGHDPE----ESIGENLYDLIRPGGIQRGAERINHQALDEGIAEA----EV 232

Query: 388 HKDTWHLPNGQT-LHVIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
             +T    +GQ    + V      G   T  ++ ++T +   E +  TL       +D  
Sbjct: 233 QCETL---DGQREFQLRVAQALDSGASETYSVYMDITERKRREERLQTLYARLQLALDVS 289

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
             G   +       + +     L+  E              A  +++ +  D       I
Sbjct: 290 DTGTFDWEIQAGEVIWDETSERLFGYEPGGFPGTF------AAWAQHVHPDDLPGAREDI 343

Query: 504 ITSFDDERK---SLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERAL 555
             + +++ K     +  +       +E   +   + +      +    ++T+  + E+ L
Sbjct: 344 EQAIENQEKYKTEFRVQIPGGQQRWIEAQGVVEYDDRGEPIRMLGIHTDITERKKREQTL 403

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E  E   +A  +K++ + ++S+E+R+PLT+I GF+++L+ +    L+ +   +   I  
Sbjct: 404 REAKERAEEAARLKSAMLANMSHEIRTPLTSITGFSEVLEQN----LSGQHGDFATKIRK 459

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  L   +  +L L+ +++ + KL    + L  ++ +V  ++   + E ++ ++     
Sbjct: 460 SSERLQRTLESVLHLSKLESSVHKLEREEVSLRAVVEDVTAALRDDLTEKSLALQTEIPD 519

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
              S +++   L +I   +L NA+ F+  G  V ++   +       ++++G  +  +  
Sbjct: 520 SPVSGISNEDALHRICRNLLENAIKFTPAGGCVGIRLLDEGRSATLEIEDSGIGMDPENV 579

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F  F   +     +  G GLGLSIV+   +  GG V + +     T     +P 
Sbjct: 580 PGLFQAFRQESEGMAREYEGSGLGLSIVKRLTDELGGEVDVETEKGEGTCFAVTLPL 636



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 91/276 (32%), Gaps = 37/276 (13%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD---ILWANISYKKNTETEGIVFQK 235
           A+     +   +  +  + L D L   V H    G+   IL AN ++++    +    ++
Sbjct: 140 AQLKEATRDAQDDRNRLENLLDGLPVPVVHGRVEGETLNILAANAAFERAFGHD---PEE 196

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNNKS-YKIVRVLNSFGE 288
           +IGE+          +  +     +   E ++  E       G  +   ++ + L+S   
Sbjct: 197 SIGENLYDLIRPGGIQRGAERINHQALDEGIAEAEVQCETLDGQREFQLRVAQALDSGAS 256

Query: 289 AGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
              ++  D+++     ++L   Y      L         ++        + +   L+  +
Sbjct: 257 ETYSVYMDITERKRREERLQTLYARLQLALDVSDTGTFDWEIQAGEVIWDETSERLFGYE 316

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTL 400
                   +     + +          +    +E+I    ++ E +K  +   +P GQ  
Sbjct: 317 PGGFPG--TFAAWAQHVH-------PDDLPGAREDIEQAIENQEKYKTEFRVQIPGGQQR 367

Query: 401 HVIVTS----NPRG---GTIWMFENLTVQVDLETKY 429
            +        + RG     + +  ++T +   E   
Sbjct: 368 WIEAQGVVEYDDRGEPIRMLGIHTDITERKKREQTL 403


>gi|28897261|ref|NP_796866.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260876228|ref|ZP_05888583.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AN-5034]
 gi|28805470|dbj|BAC58750.1| sensor histidine kinase FexB [Vibrio parahaemolyticus RIMD 2210633]
 gi|308092976|gb|EFO42671.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AN-5034]
          Length = 783

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 155/377 (41%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   ++   ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEIAQPIVDTDQKVFS-------DNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 313 ---LTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 369

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  + 
Sbjct: 370 ALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEE 429

Query: 717 G--DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                I  V++ G  IPE     +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 DFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 490 ITVTSEEGFGSTFTVSI 506



 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 73/201 (36%), Gaps = 17/201 (8%)

Query: 121 FHHYIKLSKATEKL-----RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +L+K   KL     R +  +F L  +      ++IE R+    A  R  ++  + 
Sbjct: 81  EESRQRLTKLVSKLKDMRSRDQELNFQLQ-QNIEKLNLEIEERIKAEEA--REEAMQDLE 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT---ETEGIV 232
           +E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ T   E + + 
Sbjct: 138 NEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVG 197

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSF 286
                  S+++ +  +       S  +    E       G    +++ +V          
Sbjct: 198 LSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL 257

Query: 287 GEAGIAIDVSKEITVNDQLTH 307
           G  G   D+++     + L  
Sbjct: 258 GLVGFGRDITERKRHEESLEK 278



 Score = 37.6 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 72/252 (28%), Gaps = 37/252 (14%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           ++ + ++       +      I   + +      NR+  EL       L      D   +
Sbjct: 147 QLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSK 206

Query: 358 FLRSANKLPEQLN--------WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            +       +Q          ++ W E         E  K  ++  +G+ L         
Sbjct: 207 EIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL--------- 257

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-------GVAVFGP---DGRIK-- 457
            G +    ++T +   E       + +   I  +S        G+        D ++   
Sbjct: 258 -GLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQLTEE 316

Query: 458 ------LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
                   N +  +L     + +      R          N  D      +I ++   E+
Sbjct: 317 QRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESI-SALMAEQ 375

Query: 512 KSLQGTLELLSD 523
           K L+  LE LSD
Sbjct: 376 KGLRFDLERLSD 387


>gi|184156899|ref|YP_001845238.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|183208493|gb|ACC55891.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
          Length = 906

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  
Sbjct: 248 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRK 305

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 306 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYAD 365

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    + D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 366 NIPQQVIGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIGQCLLHFSVQDSGIG 424

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 425 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGS 484

Query: 783 TINCR 787
           T    
Sbjct: 485 TFWFT 489


>gi|94267479|ref|ZP_01290888.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451988|gb|EAT02695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 529

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 158/390 (40%), Gaps = 36/390 (9%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +        +    +      I ++ +G+ V     RI ++NPA   +++        G 
Sbjct: 136 VAELAAKTREQENTLSYLNAIIGNIPDGLLVTNDRARITMANPALGGMFREAAGGNLVGR 195

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             R + A             + AAI TS   +++++   +EL    +       +     
Sbjct: 196 DCREVFAD--------SLGPMLAAISTS---QQQAVTVQVELAGGRIGSAIGTAIYRGGA 244

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                         R +T + E     + +K+ FV  VS+ELR+PLT+++GF  L+    
Sbjct: 245 GQEEFIGYLI--VVRDITHQKEI----ERMKDDFVSAVSHELRTPLTSVLGFARLIAKKL 298

Query: 599 LG---SLNSKQS-----------QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            G    +  +Q              +  I      L  L+N++LDL+ ++AG ++     
Sbjct: 299 EGVILPVVPRQDPRVERAVRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEP 358

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           +   +++     +      E    +    + +L     DR R++Q+   +++NA  F+  
Sbjct: 359 VTAEEIVKRALDATTGLFGEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFTDH 418

Query: 705 GSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSI 760
           G  V ++A R  G+   +F V ++G  I  +  +SVF +F         + +G GLGL I
Sbjct: 419 G-RVTVRARRAAGEEAVLFEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPI 477

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +  +  HGG V+  S+    +T    +P+
Sbjct: 478 CKEIVEYHGGTVTAESTPGAGSTFRFTLPT 507


>gi|260768445|ref|ZP_05877379.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
 gi|260616475|gb|EEX41660.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
          Length = 577

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    +   +A++ K+ F+  +S+ELR+PL  ++G  DLL+       ++ Q   +E 
Sbjct: 194 RELKVAQQLAEQANQSKSQFLAMMSHELRTPLNAVLGLIDLLRDDS----DAYQQDMLEQ 249

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+ +LL ++NDILDL+ +++G  +L    I L+  L    +  +      +I   V 
Sbjct: 250 MENSAELLLVIINDILDLSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDITFNVK 309

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +   +   +  D  RL QI   I+ NA+ F+  G  V +            VK++G  I 
Sbjct: 310 ASICEQFEYWVDSVRLTQILFNIIGNAIKFTHHG-FVDVSLVTARDRLEIEVKDSGIGID 368

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + +F+ F+           G GLGL+I +  + L GG +++SS     +     IP
Sbjct: 369 NERIEHLFSPFIQADTSITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSLFTISIP 428

Query: 790 SK 791
            +
Sbjct: 429 LQ 430


>gi|170725399|ref|YP_001759425.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169810746|gb|ACA85330.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 793

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 132/251 (52%), Gaps = 16/251 (6%)

Query: 552 ERALTEK--NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +R+L  K   E  +KA + ++ F+  +++ELR+P+  +IG  DLL+ SK    +S+  + 
Sbjct: 256 QRSLEFKSAKEFAKKASQTQSEFLSMMNHELRTPMNAVIGSLDLLRLSKQ---SSESMEL 312

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E  ++S+T L+N++NDILD+  +++G M+L +S   +N+ ++ + +S      +  I++
Sbjct: 313 IETATSSATNLMNILNDILDINKIESGKMQLEHSPFSINETIDGLVKSFLPSAQKKQIQL 372

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS---KGSTVIL--KAARDNGDFI--- 720
            +     + S  + D ++  ++   ++SNA+ F+        V L  + ++ + + +   
Sbjct: 373 NIKESSMVPSQVIGDEKKTRRVLYNLISNAIKFTDLKCTQGRVNLNCEVSQQSEELLYIK 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++NG  I E     +F  F         +  G GLGL I  S +   GG ++++S +
Sbjct: 433 LTIEDNGIGINESDQSKLFAPFTQAQKSVTREYGGTGLGLPICRSLVQQMGGKITLTSKE 492

Query: 779 EGVTTINCRIP 789
              +T    +P
Sbjct: 493 GVGSTFTVELP 503


>gi|56415257|ref|YP_152332.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197364187|ref|YP_002143824.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56129514|gb|AAV79020.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095664|emb|CAR61232.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 778

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|37676593|ref|NP_936989.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37201136|dbj|BAC96959.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 1381

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            ++ + + E ++ Q  L + ++  LE     L + Q  +   N     +A+  + EK + 
Sbjct: 615 KVLRASEAELQAQQEELRVTNEE-LEERTKALESQQVEMKEKNE-ALHQAQLVVEEKAKE 672

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  A + K+ F+ ++S+ELR+PL +I+  + L   +K G+L +KQ +  + I++S + LL
Sbjct: 673 LEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQIESAKAINSSGSDLL 732

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +L+N+ILDL+ V+AG + L+   + L  +  ++ +       +  +  +VI    L  + 
Sbjct: 733 SLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLRLYQDIADDKGLDFQVICAPNLPQTL 792

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFIFSVKNNGSS 729
             D QRL QI   +L+NA  F+ +G+  +           L          FSVK++G  
Sbjct: 793 ETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDKPREALIAFSVKDDGIG 852

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++   ++F  F        R   G GLGLSI +   +L GG + + S +   +     
Sbjct: 853 IKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGGRIHLKSEEGKGSIFTVI 912

Query: 788 IPSK 791
            P++
Sbjct: 913 FPTR 916


>gi|16762090|ref|NP_457707.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143579|ref|NP_806921.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213053137|ref|ZP_03346015.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213857504|ref|ZP_03384475.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289826616|ref|ZP_06545638.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25301091|pir||AG0906 aerobic respiration control sensor protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504393|emb|CAD07845.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139214|gb|AAO70781.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 778

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
 gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
          Length = 1132

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +AA   S  D  + ++GT        L  S   +  +      +  T +   E++L    
Sbjct: 385 WAAEKASGGDLDQVIEGTERSDEIGRLAISFSRMQRSIREKIGLIKTQNDELEQSLKIIK 444

Query: 560 EA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +    L+ AD++K+ F+   S+ELR+PL  ++G  + L     G +   Q + +E I  S
Sbjct: 445 QKNNELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVKDSQRRQLEMIINS 504

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L NLV+D+LD   +  G + ++   I L+  +  V +  +  +    +RI       
Sbjct: 505 GQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQIPAN 564

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L    AD QRL Q+   ++ NA+ ++S+G  +I+ A          V + G  IP +  +
Sbjct: 565 LPLVDADEQRLEQVLYNLVGNAIKYTSEG-KIIISATVLEQQLRVQVVDTGQGIPSEQLE 623

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F   +         R+G GLGLSI    I L GG + +SS     TT +  +
Sbjct: 624 HIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMIGTTFSFTL 677



 Score = 38.0 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + + + +  +  +E             +D  SE +     +GRI+  N A   L+K    
Sbjct: 849 VTLQQEIHRREQVEVSLIEAQSRLLGLLDSTSEAIICIQNEGRIRYVNSAAGKLFKRPPE 908

Query: 473 RLSPGTHIRNIAAT 486
           +L   T I +I AT
Sbjct: 909 QLERHT-ISDIIAT 921


>gi|87309428|ref|ZP_01091563.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87287736|gb|EAQ79635.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 499

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 152/363 (41%), Gaps = 16/363 (4%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA--TCSRYY 491
           +   E +D LSE V +      I  +N   R L+            I ++A     +   
Sbjct: 143 EQMREIVDKLSEPVMMTNQYDEIIFANEVARELFG-----------ILDLAEKTMAADAI 191

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                  L           ++  +  L   +D    Y I     AQ +   +   +    
Sbjct: 192 ASEGIVQLLQETRLRKTPTQRVSEIELLDSADDKHWYRITVSTIAQHLDNEMGADEPNYG 251

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
             A+       +        FV  VS+E+++PL  I  + +LL   +     ++  ++++
Sbjct: 252 AVAVLRDISGYKAIQRRNAEFVSAVSHEMKTPLAGIKAYVELLADGEAEDEQTR-DEFLQ 310

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I++ +  L  L++++L+LA ++AG++ +N     LN+LL E  + +     + NI +  
Sbjct: 311 VINSQADRLQRLIDNLLNLARIEAGVVNVNKKPRSLNELLEEAFRIVHPTAEQKNITLIS 370

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                    + DR  ++Q    +LSNA+ ++     V L++   + + +F V++ G  + 
Sbjct: 371 DLSPMYLGVLVDRDMIMQAAINLLSNALKYTPDNGKVTLRSRLQDREVVFEVEDTGVGLS 430

Query: 732 EDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTTINCRIP 789
            + C  VF +F       +   G GLGL + +  +  +HGG ++++S     +T   R+P
Sbjct: 431 PEDCDRVFEKFYRVKKDQKMASGTGLGLPLAKHIVEDVHGGELNVTSESGVGSTFRIRLP 490

Query: 790 SKE 792
           + +
Sbjct: 491 TVQ 493


>gi|159901028|ref|YP_001547275.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894067|gb|ABX07147.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 386

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 3/246 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              + E++L    E    A+  K+ F+  +S+ELR+PL  IIG+++LL+           
Sbjct: 133 QRKQIEQSLLAAKEEAELANRSKSQFLAMMSHELRTPLNAIIGYSELLQEDAEADQLPNY 192

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  I  +   LL L+ND+LDL+ ++AG M+L        +L+N+++  I  ++ +NN
Sbjct: 193 VQDLSTIRNAGVHLLGLINDVLDLSKIEAGRMELFGQDFRAIELINDLELYIQPQIAKNN 252

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            R+ +     LG   +D Q+L QI   +L+NA  F+ +G T+ L+A RD     F V + 
Sbjct: 253 NRLVLDVAKDLGVMHSDLQKLRQILLNLLTNASKFTQQG-TITLRAKRDGDWLHFEVVDT 311

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  +  +   ++F  FV        +  G GLGL+I  S   L GG + + S     +  
Sbjct: 312 GIGMSSEHVANLFQPFVQAEQSTAARFGGTGLGLAISRSLARLLGGDIMVESVLGQGSNF 371

Query: 785 NCRIPS 790
              +P+
Sbjct: 372 QLIVPA 377


>gi|308126506|ref|ZP_05910586.2| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308108483|gb|EFO46023.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 780

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 153/377 (40%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 141 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 198

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   ++   ++D            D++  + +  LE         E   +P  +   
Sbjct: 199 DVYSKEIAQPIVDTDQKVFS-------DNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 251

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S 
Sbjct: 252 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDS- 308

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 309 --PLTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 366

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  + 
Sbjct: 367 ALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEE 426

Query: 717 GDFIF--SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   V++ G  IPE     +F  +             G G+GL++ +  IN+  G 
Sbjct: 427 DFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 486

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 487 ITVTSEEGFGSTFTVSI 503



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 73/201 (36%), Gaps = 17/201 (8%)

Query: 121 FHHYIKLSKATEKL-----RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +L+K   KL     R +  +F L  +      ++IE R+    A  R  ++  + 
Sbjct: 78  EESRQRLTKLVSKLKDMRSRDQELNFQLQ-QNIEKLNLEIEERIKAEEA--REEAMQDLE 134

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT---ETEGIV 232
           +E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ T   E + + 
Sbjct: 135 NEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVG 194

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSF 286
                  S+++ +  +       S  +    E       G    +++ +V          
Sbjct: 195 LSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL 254

Query: 287 GEAGIAIDVSKEITVNDQLTH 307
           G  G   D+++     + L  
Sbjct: 255 GLVGFGRDITERKRHEESLEK 275


>gi|144898721|emb|CAM75585.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 752

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 157/387 (40%), Gaps = 48/387 (12%)

Query: 447 VAVFGPDGRIKLS-NPA----FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           V +  P+G +  S NPA      +  K  +  L+ G  +   A    + ++   G     
Sbjct: 90  VKILDPNGLVVYSSNPADYGKSYADNKAFQRALAGGVSVGTHAE--RQDFHGIGGIMAQV 147

Query: 502 AIITSFD---DERKSLQGTLELLSDS------------VLEYSIIPLPNAQTMLTFVNVT 546
            +I+S++   D    +   LEL +D              L  S+        +     V 
Sbjct: 148 DVISSYEPIIDAEGGIDAVLELYTDRSAAIAQARHGLSQLSVSMACFFFFAIVCLSFIVW 207

Query: 547 D----SVRAERALTEKNEALRK--------------ADEIKNSFVQHVSYELRSPLTNII 588
                  R E  L E+N  L                A + K+ F+  +S+E+R+P+  I+
Sbjct: 208 QLDLARRRQEEQLAERNVELAHLLDENAQAREAAEQATKAKSEFLATMSHEIRTPMNGIV 267

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T+LL  +    L  ++ ++ + I  S+  LL ++NDILD + ++AG +        L+
Sbjct: 268 GMTELLIDT---GLTPERLKFAQTIRTSAESLLTILNDILDFSKLEAGHLHFESVEFDLS 324

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             + +    +A ++   N+ +    +  L G ++ D  RL Q+   +L NA  F+  G  
Sbjct: 325 LQVEDAIDIVAPRLRGRNVDLVYWIEPSLRGRYLGDPVRLRQVILNLLGNAAKFTEFGVV 384

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            I  A+   G   F+V + G  IP+    S+F  F        RR  G GLGL+I    +
Sbjct: 385 SIHVASGQGGRLRFAVTDTGIGIPQAAQASLFGMFAQADSSTARRFGGTGLGLAICRRIV 444

Query: 766 NLHGGHVSISSSDEGVTTINCR--IPS 790
              GG +   S +   +T      +P 
Sbjct: 445 EGMGGDIGFFSEEGKGSTFWFEVMLPL 471


>gi|62181836|ref|YP_218253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129469|gb|AAX67172.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716325|gb|EFZ07896.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 778

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 150/374 (40%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --NLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|88807439|ref|ZP_01122951.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. WH 7805]
 gi|88788653|gb|EAR19808.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. WH 7805]
          Length = 683

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 158/390 (40%), Gaps = 40/390 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +   DGRI L+NP  R L++ E   L     +  +   
Sbjct: 292 EELQAAQVKQASLIATMADGAVLLDGDGRIVLANPTARRLFRWEGRNLEGQDFLNELPEL 351

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +   +E    +  ++  T  ++ R S+      L         +  P+ +T+       
Sbjct: 352 LAVELHEP--IEAVSSNRTDTNELRSSIGDPPRTLR---FVLQAVREPSGETLKGLAVTI 406

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L        +  +
Sbjct: 407 QDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDMGDQLSDEDR 456

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++   ++ +  L  LVND+LDL+ +++    + ++ I L   L +  +S      +  
Sbjct: 457 RDFLGIANSETDRLTRLVNDVLDLSRLESNR-SVTFTPIELRPGLEQTLRSYQLNASDKQ 515

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----------RD 715
           + + + +D  L   + +   LLQ+F  ++ NA+ F+ KG  ++++A            + 
Sbjct: 516 VDLSLEADPDLPDILGNWDLLLQVFDNLVGNALKFNRKGGQLLIRAYTWPDSCQMTPPQQ 575

Query: 716 NGDF------------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVE 762
             ++               + + G  I  +  + +F RF    +      G GLGLSIV 
Sbjct: 576 ENEWPTCPLTSPLPRMRVEICDTGYGISPENQQRIFERFYRVENAVHTEVGTGLGLSIVR 635

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +  HG  V ++S  +  TT    +P  +
Sbjct: 636 GILEKHGSDVRMASELDVGTTFWFDLPLAQ 665



 Score = 45.7 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + D +  +   N +   L+  +   L      +
Sbjct: 287 DAANIEELQAAQVKQASLIATMADGAVLLDGDGRIVLANPTARRLFRWEGRNLEGQDFLN 346

Query: 354 ELLEFLRSANKLPEQL---NWKTWKENIFSVYKSSETHKDTW---HLPNGQTLHVIVTSN 407
           EL E L      P +    N     E   S+     T +        P+G+TL       
Sbjct: 347 ELPELLAVELHEPIEAVSSNRTDTNELRSSIGDPPRTLRFVLQAVREPSGETLK------ 400

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    +  +
Sbjct: 401 ---GLAVTIQDLTREVELNAAQSRFI 423



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 30/191 (15%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVFQ 234
           + A             S+   + D    L    D  G I+ AN + ++    E   +  Q
Sbjct: 287 DAANIEELQAAQVKQASLIATMADGAVLL----DGDGRIVLANPTARRLFRWEGRNLEGQ 342

Query: 235 KAIGESRKLFK---EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
             + E  +L      E  + + S+         ++           + VR  +     G+
Sbjct: 343 DFLNELPELLAVELHEPIEAVSSNRTDTNELRSSIGDPPRTLRFVLQAVREPSGETLKGL 402

Query: 292 AI---DVSKEITVNDQLTH------------------TYEILHNLTVAIAIFDQNRYLQF 330
           A+   D+++E+ +N   +                     E LH++   ++  D+  +L  
Sbjct: 403 AVTIQDLTREVELNAAQSRFISNVSHELRTPLFNIKSYVETLHDMGDQLSDEDRRDFLGI 462

Query: 331 HNRSFVELWEI 341
            N     L  +
Sbjct: 463 ANSETDRLTRL 473


>gi|260173264|ref|ZP_05759676.1| two-component sensor histidine kinase [Bacteroides sp. D2]
 gi|315921537|ref|ZP_07917777.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695412|gb|EFS32247.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 406

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 167/375 (44%), Gaps = 28/375 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIK--LSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           K     K     +D L + + VF  D  I    S+PA   +     N ++      N+  
Sbjct: 45  KERFRDKYSTRILDALPDMLTVFDHDANIIELASSPATNHVEGISPNNITT----TNVKD 100

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTF 542
              +   ES   ++   I+T      +S     +L+ D VL   E  I PL     +   
Sbjct: 101 ILPKEAYESVRKNMDKVILTG-----ESSTARHDLMLDGVLHHYENRIFPLDKEYLLCMC 155

Query: 543 VNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +++    AE+        L        ++D +K++F+ ++S+E+R+PL  I+GF+ L+ 
Sbjct: 156 RDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI- 214

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +   +++QY E I  +S +LLNL NDILDLA+++A  +K N   I L D+  +++
Sbjct: 215 --TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDICLQLE 272

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           Q    K  +N +++ +           D  R++QI S +LSNA  F+ KG  +       
Sbjct: 273 QQFCHK-TQNGVKLILDDVDADMYTSGDWNRIIQIISNLLSNATKFTPKGE-IHFGYREK 330

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                F VK++G  IP     ++F RF       Q  G GLGL++    +   GG + + 
Sbjct: 331 EDFVEFYVKDSGIGIPAARIATIFRRFGKVNDFVQ--GTGLGLTLCRMLVEKMGGRIWLR 388

Query: 776 SSDEGVTTINCRIPS 790
           S +   +     +P 
Sbjct: 389 SQEGQGSRFYFTLPL 403


>gi|149927444|ref|ZP_01915699.1| PAS [Limnobacter sp. MED105]
 gi|149823936|gb|EDM83161.1| PAS [Limnobacter sp. MED105]
          Length = 489

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 10/238 (4%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E    A+  K+ F+ ++S+E+R+PL  IIG T+L   +K   L   Q ++++  + S+ 
Sbjct: 252 KEVAESANRAKSEFLANMSHEIRTPLNGIIGMTELALETK---LTKVQREFLQVANDSAN 308

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677
            LL +VN+ILD + ++AG+M ++        +  +    +  +     + ++   S+G  
Sbjct: 309 TLLLIVNEILDFSKIEAGMMTIDTVVFDPKRIFEQALGPMIPRAKSKCLELQCTFSEGFP 368

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF---SVKNNGSSIPED 733
             FV D  RLLQI + ++ NA+ F+ +G   + ++A +D         S+++ G  +P +
Sbjct: 369 KEFVGDPVRLLQIINNMVGNAIKFTERGGVYLHVQAGKDLQGIQLLKCSIRDTGIGVPFE 428

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              S+F  F        R   G GLGL+I    + L  G V + S     +T +  +P
Sbjct: 429 KVSSIFKPFEQADSSITRNFGGTGLGLTITRRLVELMRGEVWLESQVGVGSTFHFSLP 486


>gi|315181473|gb|ADT88386.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii NCTC 11218]
          Length = 1203

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 159/381 (41%), Gaps = 21/381 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-----PAFRSLWKTEENR 473
           +++Q          + +    I+ L   + +   + ++ L+N     P   S      + 
Sbjct: 492 VSIQERDALHSKEQLALLQHVINGLPNRIFIHDANYKLLLTNCQGAGPGACSPCSMRADA 551

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            +    + N+A   +          L    +T  D +       +  ++    +      
Sbjct: 552 ANAACLVENVAEFNT---------VLQGQTVTRHDVDVTDCPSGMNTVNYRRTQLRGGEN 602

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    +++     ER L +     +KA   +  F+  +S+ELR+P+  ++G  ++
Sbjct: 603 DEKFILTVVNDISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEM 662

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK   +   N      +  + +S+  L  LVNDILD + ++A  ++L+     L   + E
Sbjct: 663 LK---IRETNEDTRLILNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGE 719

Query: 654 VKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           + +   T   E ++   V  + G++ + + D  RL QI + +LSNA+ F+  G  V +  
Sbjct: 720 LLRVHCTAAREKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFTQSG-FVSVDI 778

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
                D + ++ ++G  +  +  K+VF+ FV        +  G GLGL+IV   + +  G
Sbjct: 779 EVTERDMVMNISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKG 838

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            ++I S     T+I   IP +
Sbjct: 839 DITIDSEQGKGTSIQVTIPIQ 859


>gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis
           Bt4]
 gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 987

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/402 (23%), Positives = 168/402 (41%), Gaps = 27/402 (6%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIK 457
            L V+     R G I  +           +      +    +     G+ +    DG + 
Sbjct: 352 MLWVLAIQFDRKGLIPNY-------RRAQRLLESEVLNRAILRTAPVGLGLLSAHDGSVL 404

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L N A   L         P         T  R  +E     L    I   D     LQ  
Sbjct: 405 LQNNAMLELSARTSGEPLPNRLWDAYRQTTGRSNDEDGALLLHDLAIEREDSNPIYLQAN 464

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +                    + T ++++    +E  L E   A  +A++ K++F+  +S
Sbjct: 465 VVAARYRGANV---------LLCTLLDISMRKESELKLKEARIASDQANKAKSTFLATMS 515

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  IIG  +LL+ S+   L+++QS+ ++ + + S  LL+++NDILDL+ V++G 
Sbjct: 516 HEIRTPLNAIIGNLELLRRSQ---LSNQQSERLQVVESCSNALLHIINDILDLSKVESGQ 572

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILS 696
           M L      +  LL E+  + A       ++ +  + +G    +  D  R+ QI S ++ 
Sbjct: 573 MTLENIPFDIQALLQEIVDAYAPLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIG 632

Query: 697 NAMDFSSKGST-VIL---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           NA+ F+ +G   V +   KAA+ +      V + G  I  D   ++F+ +        RR
Sbjct: 633 NAIKFTERGHISVDVHQAKAAQGDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRR 692

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL + +    + GG + + S  +  TT+   +P +E
Sbjct: 693 FGGSGLGLPLCKRLATIMGGSIEVDSLPDFGTTVTVVLPLRE 734


>gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC
           BAA-895]
 gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895]
          Length = 918

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNTTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEIQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|329115712|ref|ZP_08244429.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus parauberis NCFD 2020]
 gi|326906117|gb|EGE53031.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus parauberis NCFD 2020]
          Length = 445

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 159/379 (41%), Gaps = 34/379 (8%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F N T Q   +     + +     + HL+ G+ +      I + + +  + +   +    
Sbjct: 88  FRNQTEQ--QKASIKGMSENLQALLSHLTMGMFLVDRKKNIVIHSKSLPNYFPDTKIDFK 145

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               I           + +D   L      S    +K L+G  E   D +LE +++P+ N
Sbjct: 146 VLDDI-----------SRTDIKSLVKQTFLSTKTIKKELRGFHE--GDLILEVTVVPILN 192

Query: 536 AQTMLTFVNVTDSVRAERALT--EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                      D    E+ L        +R  +++   F+ + S+ELR+P+T+I GF + 
Sbjct: 193 -----------DVQETEQVLVLLYDLTMIRNYEKLNMDFISNASHELRTPVTSIKGFAET 241

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +K+        K  ++++ I   S  L ++V  +L L+ V     +L  + I LN+ L  
Sbjct: 242 IKSMPQDEEVLK-KEFLDIIYNESLRLEHIVEHMLTLSKV--KKTQLQKTDIDLNEFLQY 298

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S+  ++ + ++ +K   +  +    +D+  L QI   +LSNA+ ++  G  +++   
Sbjct: 299 IGNSLKHQLQQKHLHLKYDLEANVI-IESDKYLLSQIILNLLSNAIRYTEDGGDIMVITR 357

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
               +    VK+ G  I +   + +F RF         Q  G GLGLSIV+    +  G 
Sbjct: 358 ETKDNITICVKDTGIGISQLEIERIFERFYRVNKGRSRQSGGTGLGLSIVKELSQILSGK 417

Query: 772 VSISSSDEGVTTINCRIPS 790
           +S+SS     +     +PS
Sbjct: 418 ISVSSQLGQGSIFTLTLPS 436


>gi|320158700|ref|YP_004191078.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319934012|gb|ADV88875.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 1370

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            ++ + + E ++ Q  L + ++  LE     L + Q  +   N     +A+  + EK + 
Sbjct: 604 KVLRASEAELQAQQEELRVTNEE-LEERTKALESQQVEMKEKNE-ALHQAQLVVEEKAKE 661

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  A + K+ F+ ++S+ELR+PL +I+  + L   +K G+L +KQ +  + I++S + LL
Sbjct: 662 LEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQIESAKAINSSGSDLL 721

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +L+N+ILDL+ V+AG + L+   + L  +  ++ +       +  +  +VI    L  + 
Sbjct: 722 SLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLRLYQDIADDKGLDFQVICAPNLPQTL 781

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFIFSVKNNGSS 729
             D QRL QI   +L+NA  F+ +G+  +           L          FSVK++G  
Sbjct: 782 ETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDKPREALIAFSVKDDGIG 841

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++   ++F  F        R   G GLGLSI +   +L GG + + S +   +     
Sbjct: 842 IKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGGRIHLKSEEGKGSIFTVI 901

Query: 788 IPSK 791
            P++
Sbjct: 902 FPTR 905


>gi|322417759|ref|YP_004196982.1| histidine kinase [Geobacter sp. M18]
 gi|320124146|gb|ADW11706.1| histidine kinase [Geobacter sp. M18]
          Length = 584

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 108/224 (48%), Gaps = 10/224 (4%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+ ++S+E+R+P+  ++G  +LL  ++   L+ KQ  Y E +  S   LL +++DIL+
Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHTE---LDGKQRSYAEMLHRSGESLLGIISDILN 254

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLL 688
           ++ ++AG +++      L++      +          + I++     +    V D  RL 
Sbjct: 255 ISKIEAGKLEIERIGFDLHEATRSAVELYREVGRRKGVAIELQIAPDVPRHAVGDPNRLR 314

Query: 689 QIFSKILSNAMDFSSKGST---VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+   I++N + F+ KGS    V L     NG ++ F +K+ G  IP +   ++F  F  
Sbjct: 315 QVLINIINNGLKFTEKGSVRIRVTLVEKSGNGHYVGFEIKDTGIGIPGEAIGAIFELFAQ 374

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                 R   G GLGL+I +  + L GG + + S     +T   
Sbjct: 375 VDGSTTRKYGGTGLGLAIAKQLVELMGGEIEVESEPGQGSTFTF 418


>gi|221233560|ref|YP_002515996.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|220962732|gb|ACL94088.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 735

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 102/515 (19%), Positives = 191/515 (37%), Gaps = 51/515 (9%)

Query: 311 ILHNLTVA-IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           +L       I+ +D    L   + ++  +    +A  A   +     +F+   +      
Sbjct: 95  MLEQAPDDLISHYDLTGRLLRVSPAWSRIIGGSVAEAAGRRT----WDFIAPED---HPA 147

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQ 422
               + + +      S   +       G    +     P         G + +  ++T Q
Sbjct: 148 VAAYYADLLREGAAPSSRLRMRVRHVAGDIRVLESRPMPIRNAEGVVTGFVDIARDITEQ 207

Query: 423 VDLETKYNTLVKVQGET--------------IDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           ++ E +Y   +    E                +   +        G+I  ++ +   L  
Sbjct: 208 IETERRYQLALAQAHEARERAEASEWRLRLLAESAQDLTVQVDASGKILYASSSADRL-- 265

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS------ 522
              N    G    ++                 A    S  D+R SL   L  LS      
Sbjct: 266 GLANLAQEGASFMSLVHPDE----TERAATFIAGAFESRGDKRPSLDTELRFLSVDGDYR 321

Query: 523 ----DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                  LE     +P A T  TF ++TD    E +L         A   K++F+ ++++
Sbjct: 322 WMEGKGWLERDADGVPVALT-STFRDMTDRHSLEESLIAARVRAEAAVRAKSAFLANMTH 380

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT++IGF + ++     +L+       + ISA    LL+ +NDILD + +++G +
Sbjct: 381 ELRTPLTSVIGFAEQIQAEP--ALSPTVRHASDRISAGGRALLSTINDILDFSKLESGGV 438

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSN 697
            +  +   +N L+ E    ++ +     + +       LG   A D Q + Q+   ++ N
Sbjct: 439 SIVTAATEVNGLIAETVALLSVQADRKGLSLSYDGSAVLGLCAALDSQHVRQVLLNLIGN 498

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A+ F+ +G   +     D+G    +V + G  I ED  + +F RF        RR  G G
Sbjct: 499 AIKFTEQGGVTVTAQRNDDGMLEIAVADTGIGIAEDHLERLFGRFSQVDDTIARRFGGSG 558

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL+I        GG + +SS+    +T    +P 
Sbjct: 559 LGLAIGRFLAEAMGGEIQVSSTVGRGSTFTLTLPL 593


>gi|154251880|ref|YP_001412704.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155830|gb|ABS63047.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 717

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 5/247 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQ 606
             +    L +  +    A+  K+ F+ ++S+ELR+PL  IIGF++++     G + N + 
Sbjct: 458 REQTANDLRDARDVAELANASKSQFLANMSHELRTPLNAIIGFSEVMNGELFGPIENERY 517

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV  I  SS+ LL+L+NDILDL+ ++A   +L    + + D++   ++ +  +  E  
Sbjct: 518 KDYVGDIHKSSSHLLSLINDILDLSKIEADRYELYEEELDVMDVVASCERMMRHRADEAG 577

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKN 725
           + +KV  + +L   +AD++ L QI   ++SNA+ F+ KG  + L A  + +G   F V +
Sbjct: 578 VALKVTVEDELPLLMADKRALRQIVLNLVSNAVKFTPKGGLIQLGAFMEPDGRMAFRVAD 637

Query: 726 NGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            G  + +         F     +++     G GLGL +  +   LHG  + I S     T
Sbjct: 638 TGVGMSKKDIPIALEPFRQIGKDSNVYSTEGTGLGLPLTRALARLHGASLVIESEPGEGT 697

Query: 783 TINCRIP 789
           TI  R+P
Sbjct: 698 TITIRMP 704


>gi|119494078|ref|ZP_01624621.1| Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452180|gb|EAW33383.1| Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1139

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 142/314 (45%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           + S  + R+ +   +    +     ++   P+   ++    +T+  R  + L  KN  L 
Sbjct: 302 VCSLPNRRERVWQFVRQPLEQNWAVTLSCEPSQLWIVIAQEITEQHRIAQELAAKNADLI 361

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + + +K+ F+  +S+EL++PLT ++G + LLK   LGSLN +Q++Y + I  S   L+ +
Sbjct: 362 QLNRLKDEFLACISHELKTPLTAVLGLSSLLKDQALGSLNDRQARYAKLIHQSGRHLMMV 421

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN------------------ 665
           VNDILDL  ++ G ++L    + +  +     + IA + H N                  
Sbjct: 422 VNDILDLTRMETGQLELIPEPVQIRAICQRAFE-IAGQHHSNADNNSKSSSSTQKNASDS 480

Query: 666 --------NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                     R  +  +  L + VAD  RL Q+   +LSNA+ F+   S + L+ +    
Sbjct: 481 PSPNPPKPQERFILDIEPSLETIVADELRLRQMLVNLLSNALKFTPDDSQIGLQVSYWEN 540

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F++ + G  IPED    +F +F         +  G GLGL + +    LHGG VS  
Sbjct: 541 WIGFTIWDKGIGIPEDKQHLIFQKFQQLESPLTRKFEGTGLGLVLTQRLARLHGGDVSFI 600

Query: 776 SSDEGVTTINCRIP 789
           S  +  +     +P
Sbjct: 601 SKQDQGSQFTLLLP 614


>gi|27366816|ref|NP_762343.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27358383|gb|AAO07333.1|AE016809_95 Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 1370

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            ++ + + E ++ Q  L + ++  LE     L + Q  +   N     +A+  + EK + 
Sbjct: 604 KVLRASEAELQAQQEELRVTNEE-LEERTKALESQQVEMKEKNE-ALHQAQLVVEEKAKE 661

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  A + K+ F+ ++S+ELR+PL +I+  + L   +K G+L +KQ +  + I++S + LL
Sbjct: 662 LEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKDGNLTAKQIESAKAINSSGSDLL 721

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +L+N+ILDL+ V+AG + L+   + L  +  ++ +       +  +  +VI    L  + 
Sbjct: 722 SLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLRLYQDIADDKGLDFQVICAPNLPQTL 781

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFIFSVKNNGSS 729
             D QRL QI   +L+NA  F+ +G+  +           L          FSVK++G  
Sbjct: 782 ETDAQRLQQILRNLLTNAFKFTHEGAVTLNMALPSPEQAKLLDKPREALIAFSVKDDGIG 841

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++   ++F  F        R   G GLGLSI +   +L GG + + S +   +     
Sbjct: 842 IKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGGRIHLKSEEGKGSIFTVI 901

Query: 788 IPSK 791
            P++
Sbjct: 902 FPTR 905


>gi|330508892|ref|YP_004385320.1| histidine-protein kinase [Methanosaeta concilii GP-6]
 gi|328929700|gb|AEB69502.1| histidine-protein kinase [Methanosaeta concilii GP-6]
          Length = 925

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 116/282 (41%), Gaps = 12/282 (4%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            +  LE+      E  +  L         +   +     + L         A   K++F+
Sbjct: 357 REAQLEIAERRKAEEEVKRLNEDLEERVRLRTAELEATNKDLLVAKAKAEAAARAKSNFL 416

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  IIG   LL+ +    +  +Q  +++ I  S + LL +++DILD + +
Sbjct: 417 DNMSHEIRTPMNAIIGMARLLQGT---DIKPEQRDFLDTIQKSGSALLAIIDDILDYSKI 473

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           D   M+L      L   + +    +A K  E  + +  + +  +    V D  RL Q+  
Sbjct: 474 DGDKMELVNVPFDLQICIEDSLDLVAIKASEKGLELAYLLENDVPKRIVGDVNRLRQVLV 533

Query: 693 KILSNAMDFSSKGSTV------ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +L NA+ F+ +G  V       L+ + D  +  F+V++ G  I  +    +F  F    
Sbjct: 534 NLLGNAVKFTDRGDVVLKVSSRRLEGSDDKVELHFAVRDTGIGISPENQSELFQSFTQVD 593

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                   G GLGL+I    +   GG +   S     ++   
Sbjct: 594 SSKTRSYGGTGLGLAISRGIVERMGGRIWAESEIGTGSSFYF 635


>gi|330977289|gb|EGH77244.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 595

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 148/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGH---------SLGEALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKVRFEDQAQEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|320589282|gb|EFX01744.1| two-component osmosensing histidine kinase [Grosmannia clavigera
           kw1407]
          Length = 1307

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/381 (20%), Positives = 156/381 (40%), Gaps = 26/381 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T ++D+E     L  +   TI+++ + ++VF  + +    +     +   + +     
Sbjct: 598 DMTRKIDVEAMGEIL--ILKVTINNMVDRLSVFCNEVQRVAKDVGVDGIMGGQADIAGLK 655

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + I    +   N     +L A +    D    +  G    L +      +  L    
Sbjct: 656 GRWKEITTDVNTMAN-----NLTAQVRAFGDITNAATDGDFTKLVEVEASGEMDELKKKI 710

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++ +       R  +A     EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +
Sbjct: 711 NLMVYNLRDSIQRNTQA----REAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT 766

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q + +  ++  +  LL +++DILDL+ ++A  M +      L   +    ++
Sbjct: 767 ---DLTLYQREMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKT 823

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +A K +E  + +    D  +    + D  RL QI   ++ NA+ F+ +G  V L   +  
Sbjct: 824 LAVKANEKFLDLTFHVDSSVPDHVIGDSFRLRQIILNLVGNAIKFTERG-KVSLTIRKAG 882

Query: 717 G--------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
                       F V + G  IP D    +F+ F        R   G GLGLSI +  ++
Sbjct: 883 QVDCSSGEYAIEFVVTDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVS 942

Query: 767 LHGGHVSISSSDEGVTTINCR 787
           L GG V + S     ++    
Sbjct: 943 LMGGDVWVESEYGKGSSFYFT 963


>gi|225571388|ref|ZP_03780384.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
           15053]
 gi|225159864|gb|EEG72483.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
           15053]
          Length = 976

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 111/239 (46%), Gaps = 8/239 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +        K +  K  F+  +S+E+R+P+  I+G +DL  T  +  +       +  I 
Sbjct: 579 MQNSLAKAEKENRAKGEFLSRMSHEIRTPMNAIVGLSDL--TCMMDDVPETVRVNLSKIR 636

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS  LL L++DILD++ ++  +M +      +  ++NE++  +  +     +  K+   
Sbjct: 637 SSSRYLLGLISDILDMSRIEQDMMTIVREPFSIGQVMNELESMMTAEAGRRELEFKLDLR 696

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-----KAARDNGDFIFSVKNNGSS 729
            K    + D  RL Q+   ++SNA  F+S G  + +     +A+ +   F F V +NG  
Sbjct: 697 IKSDRLIGDAVRLKQVLMNLISNAFKFTSAGGRIRVDVTETEASAEEAVFCFRVADNGIG 756

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I E   + +F  F     +  + +G GLGL+I ++ + L GG + + S     +     
Sbjct: 757 ISEKDQERIFESFEQVGTNYSKSQGTGLGLAISKNIVELMGGKLELKSEIGKGSEFYFT 815


>gi|16766623|ref|NP_462238.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16421886|gb|AAL22197.1| sensory histidine kinase in two-component regulatory system with
           ArcA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|312914355|dbj|BAJ38329.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
          Length = 778

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|226357435|ref|YP_002787174.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226319425|gb|ACO47420.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 1416

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 134/848 (15%), Positives = 294/848 (34%), Gaps = 138/848 (16%)

Query: 56   NETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII--GQLHQRIDIPQTDTDLL 113
                +   E+ D+  +Y  L+                  ++  G+        +      
Sbjct: 591  ERVRAE-QELRDREERYRVLVEY---------AAVGVARVLPDGRWLDINPAGEALLGYT 640

Query: 114  SFENWLKFHHYIKLSKATEKLRKEGQSF------DLVAETQNDCAIKIEGRVSGSCAFLR 167
              E  L     + ++   ++  +  + F      ++ A +Q    ++ +G++  +   + 
Sbjct: 641  REE--LLGRTLLDVTHPDDRGPEGTRPFRRLVAGEVDAFSQEKRYVRKDGQLVWTKVTVS 698

Query: 168  -ILSLDGIYS-------ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
             +    G          +++E       L      F+ L  S    +      G + + N
Sbjct: 699  AVRDEAGATQYVVAILNDISEQKKAEDLLRASEERFRQLVGSSPTGIAVGSIDGTLRFPN 758

Query: 220  ISYKKNTE------TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF----------- 262
             +Y +           G+V   A+        +E   R    S + + +           
Sbjct: 759  AAYLEMLGFTLEDFDAGLVNWAALTPPEYRSADENAFRQAFESGVSRPYEKEMLDRYGRR 818

Query: 263  -----------------------------CETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
                                             +  EHG     ++    ++  E   A+
Sbjct: 819  VPVGLVLTRYEQHDETFVVGYVQDLTLHKAAQRTLREHGEELERRVAERTHALEEQRAAL 878

Query: 294  DV--------SKEITVNDQLTHTYEILHNL--TVAIAIFDQNRYLQFHNRSFVELWEIDL 343
            D         +    + +   H  ++L      V++A ++++  L        ++ E+ L
Sbjct: 879  DAFVRFTELAAAATGLAELTRHAVDVLRATIGPVSVAYYERHDMLWKAVTWSEDIPEVAL 938

Query: 344  AFLATN-----PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH---------- 388
            A +        PS  ++++  ++     E+ + +  +   F +Y +   +          
Sbjct: 939  AMIRGGVPLDQPSFAQVVQDQQAFYM--EEWDAQGEQLGGFRMYGAGALYPFFIDGQAHG 996

Query: 389  --------KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-----KYNTLVKV 435
                    + TW   +      +  S             T Q++ +      +   L + 
Sbjct: 997  LLNMASFSQRTWTPRDKAIFRAVGRSF---ALALERREQTAQLEAQKAELDMRTQALEQD 1053

Query: 436  Q---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            Q      ++ L+EG+      G + + N   R+        L P                
Sbjct: 1054 QGFLRTLLESLTEGIVACDAQGHLTVFNDVTRAFHGLGPEPLPPAAWAERFDLYREDGVT 1113

Query: 493  ESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNA-----QTMLTFVN 544
                 ++   +  +F  +R   QG +    +     +  +  P+ +        ++   +
Sbjct: 1114 PLPTEEI--PLFRAFQGQRVRDQGMVIAPKNGPRRWINANGNPMYSLTGEKLGAVIAMQD 1171

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            VT   +AE+ L   N  L++++     F    S++L+SPL  I  + +L++    G L+ 
Sbjct: 1172 VTARRQAEQELQRVNVELQRSNADLEHFAAVASHDLKSPLRTIRSYLELIERRLTGQLDE 1231

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +  +Y+ + + ++  +  L++D+L  A V  G  + N + +    ++ EV   +   + E
Sbjct: 1232 RSMRYMGFATEAAARMDTLIDDLLAYARV--GRQR-NITRVEPQRVVQEVLGGLTASIQE 1288

Query: 665  NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFS 722
               +I+V   G L    AD  +L Q+F  ++ NA+ F  +G    V++ A RD    +F 
Sbjct: 1289 RGAQIRV---GDLMPVQADESQLRQVFQNLVGNALKFQPEGRVPEVMIDATRDGRYVLFQ 1345

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            V++NG  I E+  + VF  F     + +  G GLGL+IV   I  H G + ++S     T
Sbjct: 1346 VRDNGIGISEEYYERVFALFQQLHGKSEFPGSGLGLAIVRKIIEEHDGRIWLTSVVGEGT 1405

Query: 783  TINCRIPS 790
            T +  +PS
Sbjct: 1406 TFHFTLPS 1413



 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 157/493 (31%), Gaps = 45/493 (9%)

Query: 132 EKLRKEG-QSFDLVAETQNDCAIKIEGRVSG--SCAFL-RILSLDGIYSELAETTLKCKK 187
           + +R  G  S  LV  T       + G  +   S  F+   L L    SE A   L   +
Sbjct: 409 DAMRNLGFHSLILVPMTVRGRRTGVLGVATTHPSRTFVHDDLELARQLSERAALALDNAR 468

Query: 188 ----LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ----KAIGE 239
               +      ++ L D+    VW     G +L     + + T      ++     A+  
Sbjct: 469 RYATVRTGEERYRSLVDATRQTVWTNTPDGRLLGDQPGWARLTGQTREEYEGFGWAAVLH 528

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------AGIAI 293
                +         +SA      + V  +  G+ + + +  V     +       G+  
Sbjct: 529 PDDQERSVAAWHQAVASASPYEINQRV-RVADGSYRHFHVRVVPALGQDGSVREWTGVHT 587

Query: 294 DVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           D+++ +    +L    E    L     V +A    +      N +   L       L   
Sbjct: 588 DITERVRAEQELRDREERYRVLVEYAAVGVARVLPDGRWLDINPAGEALLGYTREELLGR 647

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                LL+     ++ PE    + ++  +     +  + +  +   +GQ +   VT +  
Sbjct: 648 ----TLLDVTHPDDRGPEGT--RPFRRLVAGEVDA-FSQEKRYVRKDGQLVWTKVTVSAV 700

Query: 410 G-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
                     + +  +++ Q   E       +   + +     G+AV   DG ++  N A
Sbjct: 701 RDEAGATQYVVAILNDISEQKKAEDLLRASEERFRQLVGSSPTGIAVGSIDGTLRFPNAA 760

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLEL 520
           +  +          G  + N AA     Y  +D      A  +      E++ L      
Sbjct: 761 YLEMLGFTLEDFDAG--LVNWAALTPPEYRSADENAFRQAFESGVSRPYEKEMLDRYGRR 818

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +   ++            +    ++T    A+R L E  E L +    +   ++    E 
Sbjct: 819 VPVGLVLTRYEQHDETFVVGYVQDLTLHKAAQRTLREHGEELERRVAERTHALE----EQ 874

Query: 581 RSPLTNIIGFTDL 593
           R+ L   + FT+L
Sbjct: 875 RAALDAFVRFTEL 887



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 66/436 (15%), Positives = 132/436 (30%), Gaps = 39/436 (8%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           + +R +LA      Y+ +        +Y SL+        VW    +   ++G       
Sbjct: 456 LSERAALALDNARRYATVRTGE---ERYRSLVDATRQT--VWTNTPDG-RLLGDQPGWAR 509

Query: 105 I-PQTDTDLLSFENW---LKFHHYIKLSKATEKLRKEGQSFDLV--AETQNDCAIKIEGR 158
           +  QT  +   F  W   L      +   A  +       +++       +        R
Sbjct: 510 LTGQTREEYEGFG-WAAVLHPDDQERSVAAWHQAVASASPYEINQRVRVADGSYRHFHVR 568

Query: 159 VS---GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
           V    G    +R     G+++++ E     ++L +    ++VL +     V      G  
Sbjct: 569 VVPALGQDGSVR--EWTGVHTDITERVRAEQELRDREERYRVLVEYAAVGVARVLPDGRW 626

Query: 216 LWANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
           L  N + +        E  G           +  +     R + +  ++    E     +
Sbjct: 627 LDINPAGEALLGYTREELLGRTLLDVTHPDDRGPEGTRPFRRLVAGEVDAFSQEKRYVRK 686

Query: 271 HGNNKSYKIV--RVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHNL----TVAIA 320
            G     K+    V +  G     +    D+S++    D L  + E    L       IA
Sbjct: 687 DGQLVWTKVTVSAVRDEAGATQYVVAILNDISEQKKAEDLLRASEERFRQLVGSSPTGIA 746

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           +   +  L+F N +++E+    L        N   L      +   E    + ++  +  
Sbjct: 747 VGSIDGTLRFPNAAYLEMLGFTLEDFDAGLVNWAALTPPEYRSAD-ENAFRQAFESGVSR 805

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT----VQVDLETKYNTLVKVQ 436
            Y+     +    +P G  L      +     +   ++LT     Q  L      L +  
Sbjct: 806 PYEKEMLDRYGRRVPVGLVL-TRYEQHDETFVVGYVQDLTLHKAAQRTLREHGEELERRV 864

Query: 437 GETIDHLSEGVAVFGP 452
            E    L E  A    
Sbjct: 865 AERTHALEEQRAALDA 880


>gi|223043418|ref|ZP_03613464.1| sensor protein YycG [Staphylococcus capitis SK14]
 gi|222443207|gb|EEE49306.1| sensor protein YycG [Staphylococcus capitis SK14]
          Length = 610

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 156/399 (39%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 228 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRV 287

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++N     +    +  +  G ++  +    + +       D       SF  +    +G
Sbjct: 288 RIANDMALKMLGLAKEDV-IGYYMLGLLNLENEF-----SLDEIQENNDSFLLDINEEEG 341

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++     +S I             + D    ++            +  +  FV +V
Sbjct: 342 IIARVN-----FSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 385

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+        S   Q++      +  ++ LVND+L L+ +D  
Sbjct: 386 SHELRTPLTSMNSYIEALEEGAWQD-ESLAPQFLSVTREETERMIRLVNDLLQLSKMDNE 444

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    +  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 445 SDQITKEIVDFNMYINKIINRHEMAA--KDTTFVREIPQQTIFTEIDPDKMTQVFDNVIT 502

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 503 NAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 562

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 563 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 601


>gi|124007456|ref|ZP_01692162.1| sensory transduction histidine kinase [Microscilla marina ATCC
           23134]
 gi|123987112|gb|EAY26861.1| sensory transduction histidine kinase [Microscilla marina ATCC
           23134]
          Length = 1248

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 130/261 (49%), Gaps = 11/261 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           ++ +  +    + +   +AL +     ++A   K+ F+ ++S+E+R+PL  ++GF DLL 
Sbjct: 711 SRLLSAYRKEQERLALMKALQKTTLEAQQASVAKSEFLANMSHEIRTPLNGVVGFVDLLL 770

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   +L++ Q QY++ +S S   LL ++NDILD + ++AG M+L    + L  + + ++
Sbjct: 771 QT---NLDATQKQYLDIVSQSGNTLLEIINDILDFSKIEAGKMELLPVKVDLAQMCDGLR 827

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST---VILK 711
             +  +  +  + + +   G L  +   D  RL Q+ + +LSNA+ F+SKG+    V + 
Sbjct: 828 DLMIYQTKQKGLEMILSLAGDLPQYAWFDEMRLKQVLTNLLSNAVKFTSKGTIEFKVTML 887

Query: 712 AARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
               N      F VK+ G  I  +  + +F  F+       +R  G GLGLSI    + L
Sbjct: 888 QKESNQKALLRFLVKDTGVGILPENQQKIFEAFLQEDTSTTKRFGGTGLGLSISNRLLAL 947

Query: 768 HGGHVSISSSDEGVTTINCRI 788
               + + S+    +T    I
Sbjct: 948 MDSRLCLESTHGKGSTFYFDI 968


>gi|159184529|ref|NP_353940.2| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|159139836|gb|AAK86725.2| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 510

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 3/250 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL- 602
           +VT+  R  R +  K      A++ K+ F+  VS+ELR+PL  ++GF+D+L     G L 
Sbjct: 213 DVTEMERLRRDVARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYFGRLE 272

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q +YV  I  S   LL++VN +LD++ ++AG  +L   +  +++ +   +  +  + 
Sbjct: 273 NDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEAGRYELLMESFPISETIASCEAMLGLQA 332

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  + +       +G   AD++ + Q+   +  NA+ F+  G  V + AAR+ G    +
Sbjct: 333 KEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAAREGGMLKLT 392

Query: 723 VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  D  + +   F  V N +  +  G GLGLS+V+  + LHGG   I+S    
Sbjct: 393 VSDTGIGIASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFVITSKPAE 452

Query: 781 VTTINCRIPS 790
            T +   +P+
Sbjct: 453 GTVVTITLPA 462


>gi|291523426|emb|CBK81719.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 1068

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 172/418 (41%), Gaps = 31/418 (7%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRI 456
           + + +          +    ++T    +E+  +  +     +++ L + +  +       
Sbjct: 372 RNVIIRGEIEDSEYAMIFLRDITE-AKVESARHLQMAADNASMEQLIQSIVRLVDRFVVC 430

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            L N  +       +    P     +        Y   +  +    +I   D+ RK L+ 
Sbjct: 431 DLENDRYEFYNLNGQMIYKPLGFYHDFQMQVLEKYKTLEPLEAIDILIAP-DNIRKKLKS 489

Query: 517 TLEL-------LSDSVLEY-SIIPLPN-----AQTMLTFVNVTDSVRAE----RALTEKN 559
             ++       L +   +  S IPL        + ++  ++VT   +AE    +AL E  
Sbjct: 490 ENDIYKFEYCSLDEKTYKIASYIPLEWKNGKLEKVLMASMDVTQEKKAEIESRQALKEAY 549

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +   A+  K  F+ ++S+++R+P+  I+G T +           +  + +  I+ SS  
Sbjct: 550 RSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAI--AGANVESKDRVIECLGKITESSRH 607

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLG 678
           LL L+N++LD+A +++G M L      L++L++ +       + E+     +  +  +  
Sbjct: 608 LLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTKPMLDEHKHNFDIHINHIEHE 667

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPE 732
           +   D  R+ Q+F  ++SNA+ ++  G  +I             G + F++++NG  +  
Sbjct: 668 AVCGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMST 727

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  K +F+ F         R  G GLG++I  + +NL  G++ + S+    T I   I
Sbjct: 728 EFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGNIKVDSTLHKGTRITVTI 785


>gi|197265807|ref|ZP_03165881.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197244062|gb|EDY26682.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 778

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|26988825|ref|NP_744250.1| two-component sensor protein [Pseudomonas putida KT2440]
 gi|24983627|gb|AAN67714.1|AE016402_6 two-component sensor protein [Pseudomonas putida KT2440]
          Length = 1211

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 167/383 (43%), Gaps = 13/383 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E   N  +      ++     + V   +G +K  N ++    +   +++    
Sbjct: 561 IRQRQRAERALNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSDQVIGKK 620

Query: 479 HIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              ++ A   +    ++D   + AA      D    ++G    +   +L Y         
Sbjct: 621 LKDSLFADSEQARQIQADYQKVMAAGSPLIKDRPLRIKGRDLTIYHWILPYRDSLGEVQG 680

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKT 596
            +  ++++++  +    L +  +    A+  K++F+  +S+E+R+P+  +IG  +L +K 
Sbjct: 681 IIGGWIDISERRQLVLELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKR 740

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G ++      +E    S+  LL L+ DILD+  +++G + L    + L  L+  V +
Sbjct: 741 ADQGRVD---RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVAR 797

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
               +  +  + ++V I+       + D  R  Q+ S ++SNA+ F+  G   + ++   
Sbjct: 798 IFDGQARQKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRISVRLLD 857

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLH 768
           D           V+++G  I  D  + +FN F+      +G R G GLGL+I  +   + 
Sbjct: 858 DGTSTPAVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMM 917

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +S+ S ++  T +  ++P +
Sbjct: 918 GGSLSMKSLEDVGTQVRLKMPLQ 940



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L++ ++  + L +     ++ RD+ G +   N SY +  +      
Sbjct: 557 LRLQIRQRQRAERALNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSD-- 614

Query: 234 QKAIGESRK--LFKEEIKKRMISSS-----ALEKNFCETVSTLEHGNNKS--YKIVRVLN 284
            + IG+  K  LF +  + R I +      A      +       G + +  + I+   +
Sbjct: 615 -QVIGKKLKDSLFADSEQARQIQADYQKVMAAGSPLIKDRPLRIKGRDLTIYHWILPYRD 673

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   +  +L    +   +   A + F
Sbjct: 674 SLGEVQGIIGGWIDISERRQLVLELRQAKQQADDANRAKSTF 715


>gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1299

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
             +E+K  F  ++S+ELR+PLT II   + L   +      KQ   ++ I  ++  LL+LV
Sbjct: 792  MEEMKYRFFTNISHELRTPLTLIIAPLEYLLKKEENPDTRKQ---LKTIDRNAHNLLSLV 848

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            N +LD   ++     L   T  L D+L+ + +S      E NIR       +     AD 
Sbjct: 849  NQLLDFRRIEMKGETLALETFNLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLVTADS 908

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFN 740
             ++ ++ + +LSNA  F+ +G  V LKA  +  D     +  V+++G  IP +    +F 
Sbjct: 909  PKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPTEEQTHIFE 968

Query: 741  RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            RF   +      G G+GL++ + ++ +H G +++SSS    +    RIP
Sbjct: 969  RFHQASSHKGNTGSGIGLNVAKEYVQMHHGKINVSSSPGKGSCFTVRIP 1017


>gi|332531837|ref|ZP_08407722.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038813|gb|EGI75255.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 1046

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   LT   E   KA++ K  FV ++S+ELR+P+  I+G   LL++S+   L S+Q
Sbjct: 345 QMEAMNADLTSAMEQTDKANKTKIDFVANMSHELRTPMNGILGMLQLLQSSE---LPSRQ 401

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y +   +S+  LL ++N+ILD + +++  ++L      L+ +++ V+   +T   +  
Sbjct: 402 KHYADKAFSSAQNLLQILNNILDFSKLESEKVQLEQIPFTLHTIVSNVQNLFSTNAKQKG 461

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIF 721
           + +  I     G   + D   L QI +  + NA+ F+  G   +I++A   +    +  F
Sbjct: 462 LLLNFILHVDAGLELIGDPMHLSQIINNCVGNAIKFTEHGEISLIIEATSQHEKTINLRF 521

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           S+K+ G  + E+  K +F  F        R   G GLGL+I +    L GG + + S+  
Sbjct: 522 SIKDTGIGMTEEQSKIIFQSFSQGDSSTTRKYGGTGLGLTISKQLTKLLGGDIQVRSTIN 581

Query: 780 GVTTINCRIP 789
             +     +P
Sbjct: 582 QGSEFFFTLP 591


>gi|319778144|ref|YP_004134574.1| pas sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317171863|gb|ADV15400.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 811

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 156/378 (41%), Gaps = 21/378 (5%)

Query: 419 LTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK-TEENRL 474
           + V +D + +   L+         +  L + + +   DGR   +NPA   +   T  + L
Sbjct: 178 IGVLLDRQQRRRELLMSNMTYRAMVRELPDCLNIKDVDGRFIAANPATAEMVGATSVDDL 237

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T         +  + + +   L A      D         L       L     P  
Sbjct: 238 IGKTDFDFYPKEVAERFRQDEMGALEAGQTLRIDQP-----ALLPDGRQGWLYTLKAPFR 292

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +    +  V   +    E+          +  ++KN F+  VS+ELR+PLT+I G   L+
Sbjct: 293 DESGKIVGVITYNRDITEQK---------RTAQLKNDFISTVSHELRTPLTSIRGSLGLI 343

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G L  K +  V     +S  L+ L+NDILD+  +++G++      + +  +L + 
Sbjct: 344 AAGVAGELPPKAANLVNIAHTNSERLVLLINDILDMEKIESGVITFKIKQMPVRQVLEQA 403

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AA 713
             + +  M ++ IRI ++ D        D  RL Q+ + +LSNA+ FS    TV +K   
Sbjct: 404 IAASSNYMADSRIRIVLVDDAPRAEANIDPDRLHQVMANLLSNAIKFSQTDGTVTVKFQR 463

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
           RD      SV + G+ IPE     +F +F        R   G GLGLSIV+S     GG 
Sbjct: 464 RDRDMLRISVVDQGAGIPEAFRSRIFGKFEQADASSTRKIGGTGLGLSIVKSITEKLGGA 523

Query: 772 VSISSSDEGVTTINCRIP 789
           VS  + +   T+ +  +P
Sbjct: 524 VSFETEEGQGTSFHVDLP 541


>gi|298251742|ref|ZP_06975545.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297546334|gb|EFH80202.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 489

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 6/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      A     ++L ++++++ + V  V++ELR+PL NI G+ +LL+   L       
Sbjct: 221 EIGALAHAFNAMADSLSRSEQLRRNLVSDVAHELRNPLMNIRGYLELLQDQVLEPTPET- 279

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  +   +++L  LV D+ D++  +AG + L    I L D+ ++  Q +   + E  
Sbjct: 280 ---LASLYEETSLLNRLVADLQDVSLAEAGQLHLTRQPIELADIASQAVQIVQPHLAEKQ 336

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + + V     L    AD++R+ QI   +LSNA+  +     + L A         SV++ 
Sbjct: 337 LTLHVSIPSDLPHIEADQERVAQILRNLLSNAIRHTPSQGEICLAAGLSEAGVHISVRDT 396

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    +F RF        R   G GLGL+IV+  +  HGG VS+ S     T  
Sbjct: 397 GVGIAPEHLPYLFERFYRADFSRARATGGTGLGLAIVKQVVQAHGGQVSVESQVGKGTCF 456

Query: 785 NCRIP 789
              +P
Sbjct: 457 TFTLP 461


>gi|228990403|ref|ZP_04150368.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM
           12442]
 gi|228996504|ref|ZP_04156143.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17]
 gi|228763136|gb|EEM12044.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17]
 gi|228768929|gb|EEM17527.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM
           12442]
          Length = 466

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 132/295 (44%), Gaps = 5/295 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 FVMILLTIWIGRKIIIAITKPLSQMERVANHMATGDFSERITISSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F  +VS+ELR+PL+ I G+++ +          +QS++ + I   +  
Sbjct: 230 NSLEMEDVKRKEFSANVSHELRTPLSYIKGYSEAILDGVAKG--QQQSKFTQLIHREAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV   L+ +V ++   K  E  + I    D  +  
Sbjct: 288 MQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLETYELKCMEKELYISTDLDPDII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R+ Q+   +L NA+ ++++   + ++  + +      +K+ G  I  +  + + 
Sbjct: 347 VTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLKKKDRQCELKIKDTGIGIDAEHLEQLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF         +  G GLGL+IV+  +++H G   + S     TT+  ++P+ E
Sbjct: 407 ERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRVESEKGKGTTVIIKLPANE 461


>gi|119717079|ref|YP_924044.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119537740|gb|ABL82357.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 712

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 119/578 (20%), Positives = 212/578 (36%), Gaps = 62/578 (10%)

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI 299
            R L   +  +R        +     +  L     K+   V            + V+   
Sbjct: 163 GRDLGGGDEAERGQQRDEPGQTHHAPILGLAGPAAKAAPFVYGEAPRFGPRGGVRVADRA 222

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
              D L     +L +  + +A+ D    L   NR+  E+     A         ELL+  
Sbjct: 223 ETED-LWRL--MLQHSPIGMAVVDPTGRLLMANRALCEMLGYSQA---------ELLQRG 270

Query: 360 RSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRG---G 411
                 PE L+        + +    S   +  +    G  +     V V  +P G    
Sbjct: 271 FQDLTHPEDLDADLALFHQVLAGELDSYRIRKRYLHAEGHVVWGDLSVAVVRDPDGTARH 330

Query: 412 TIWMFENLTVQVDLETKYN-------TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF- 463
            I    ++T Q   E +            ++     D ++ G+ + GPDGR + +N    
Sbjct: 331 FISQVLDVTEQRANEERLEAVTAEVERERQMLAAIFDTVNVGLLLIGPDGRYERTNKRHA 390

Query: 464 ----RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
               R   +  E       H+           +        AA    FDD    +     
Sbjct: 391 DTLRRPFPEGHEGEAGQLGHV--YFPDGKTLMSREQMPSYRAAQGEEFDDYNYWVGADPA 448

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             S        +  P+ + +   +   +     RA+           ++K+ FV  VS+E
Sbjct: 449 TWSAFSTSARQVRGPSGERLGAVLAYQEVTDLMRAI-----------QVKDEFVASVSHE 497

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL------VNDILDLATV 633
           LR+PLT+++G  +LL   +   L  + +  +  +  ++  L  L      +  I D    
Sbjct: 498 LRTPLTSVLGHLELL--GERDDLTDEVAAQLRVVQRNAARLQALLSDLLLIGQIAD---- 551

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
             G ++LN   + L  +++E  +++     ++++ I+V + G L +  AD QRL Q+   
Sbjct: 552 --GTLELNSGPVDLRTVVDEAVEAVRAVADQSDVSIRVEAPGTLPAV-ADGQRLRQVLDN 608

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQR 751
           +LSNA+ +   G +V ++  R +      V + G  I +   + VF RF     A R   
Sbjct: 609 LLSNAIKYGRAGCSVTVELRRADDGVELLVADTGMGIADHDREHVFGRFFRGGEAVRQHL 668

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGLSIV S +  HGG V++ S     +T    +P
Sbjct: 669 PGTGLGLSIVASIVAAHGGTVTVESELGRGSTFRVALP 706



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/325 (11%), Positives = 93/325 (28%), Gaps = 49/325 (15%)

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFL-----RILSLDGIYSELAETTLKCKKLSN 190
           + GQ  D   +T +   + + G  + +  F+     R     G+              + 
Sbjct: 173 ERGQQRDEPGQTHHAPILGLAGPAAKAAPFVYGEAPRFGPRGGVR---------VADRAE 223

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET----------EGIVFQKAIGES 240
              +++++       +   D  G +L AN +  +              + +   + +   
Sbjct: 224 TEDLWRLMLQHSPIGMAVVDPTGRLLMANRALCEMLGYSQAELLQRGFQDLTHPEDLDAD 283

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTL-----------EHGNNKSY--KIVRVLNSFG 287
             LF + +   + S    ++        +             G  + +  +++ V     
Sbjct: 284 LALFHQVLAGELDSYRIRKRYLHAEGHVVWGDLSVAVVRDPDGTARHFISQVLDVTEQRA 343

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
                  V+ E+    Q+     I   + V + +   +   +  N+   +          
Sbjct: 344 NEERLEAVTAEVERERQM--LAAIFDTVNVGLLLIGPDGRYERTNKRHADTLRRPFPEGH 401

Query: 348 T------NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTL 400
                          + L S  ++P   +++  +   F  Y         TW   +    
Sbjct: 402 EGEAGQLGHVYFPDGKTLMSREQMP---SYRAAQGEEFDDYNYWVGADPATWSAFSTSAR 458

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDL 425
            V   S  R G +  ++ +T  +  
Sbjct: 459 QVRGPSGERLGAVLAYQEVTDLMRA 483


>gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
 gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
          Length = 918

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNTTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L + L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  IL      +         +++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTENGNIDILVEKRSISNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 646

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 158/406 (38%), Gaps = 10/406 (2%)

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           PN   + V   +          E++  + +   +           +  + + V     +G
Sbjct: 170 PNAIVMPVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANG 229

Query: 455 RIKLSNPAFRSLWKTEENRLSPG-----THIRNIAATCSRYYN-ESDGWDLFAAIITSFD 508
           R+  ++ +       E +RL         HI +  A      +  + G           D
Sbjct: 230 RVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLD 289

Query: 509 DERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             R     T+   +    +E  +     +  +    +V++  R  + L        +ADE
Sbjct: 290 AARGDGSRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADE 349

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVND 626
           +K  F+  VS+ELR+PL  IIGF+D+L      SL+ ++  +Y   I+ S   LL++VN 
Sbjct: 350 VKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLLDVVNT 409

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ +  G        + +  L+      +  K   + I +         + VAD + 
Sbjct: 410 LLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALVADARA 469

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-- 744
             Q+   ++SNA+ F+ +G  V +   R        V ++G  I E     + + F    
Sbjct: 470 CRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEADLPRLGDPFFQVG 529

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +     G GLGLS+V     LHGG VS+ S+    T +   +P 
Sbjct: 530 GGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575


>gi|160884048|ref|ZP_02065051.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483]
 gi|156110390|gb|EDO12135.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483]
          Length = 400

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 168/375 (44%), Gaps = 28/375 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIK--LSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           K     K     +D L + + VF  D  I    S+PA   +     N ++      N+  
Sbjct: 39  KERFRDKYSTRILDALPDMLTVFDHDANIIELASSPATNHVEGISPNNITT----TNVKD 94

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTF 542
              +   ES   ++   I+T      +S     +L+ D VL   E  I PL     +   
Sbjct: 95  ILPKEAYESVRKNMDKVILTG-----ESSTARHDLMLDGVLHHYENRIFPLDKEYLLCMC 149

Query: 543 VNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +++    AE+        L      + ++D +K++F+ ++S+E+R+PL  I+GF+ L+ 
Sbjct: 150 RDISQQWEAEQTNAQQQKELKAARIKVEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI- 208

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +   +++QY E I  +S +LLNL NDILDLA+++A  +K N   I L D+  +++
Sbjct: 209 --TYATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDICLQLE 266

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           Q    K  +N +++ +           D  R++QI S +LSNA  F+ KG  +       
Sbjct: 267 QQFCHK-TQNGVKLILDDVNTDMYTSGDWNRIIQIISNLLSNATKFTPKGE-IHFGYREK 324

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                F VK++G  IP     ++F RF       Q  G GLGL++    +   GG + + 
Sbjct: 325 EDFVEFYVKDSGIGIPAARIATIFRRFGKVNDFVQ--GTGLGLTLCRMLVEKMGGRIWLR 382

Query: 776 SSDEGVTTINCRIPS 790
           S +   +     +P 
Sbjct: 383 SQEGQGSRFYFTLPL 397


>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 1052

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 148/373 (39%), Gaps = 28/373 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +   L ++   T+DH S+         ++  S   +R      E       H  +    
Sbjct: 373 RQAQHLARLGSWTLDHTSQ---------KLTWSAEVYRIFEIDPEAFQPDYQHFFDTIHP 423

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL-QGTLELLSDS---VLEYSIIPLPNAQTMLTF 542
             R   +             F + R  L  G ++ + +    + +    PL ++ T++  
Sbjct: 424 EDREQVQQVFESSVREHQPYFIEHRLLLKDGRIKFVEERGVTLFDDKGRPLTSSGTVM-- 481

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T+    ER   E  +   +A+  K+ F+ ++S+E+R+P+  +IGFT          L
Sbjct: 482 -DITERKETERLQQEARDRAERANAAKSEFLANMSHEIRTPMNAVIGFT---DLLLDSGL 537

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q  Y + I  S   L++L+NDILD + ++AG +           L  ++   I  ++
Sbjct: 538 DDIQMDYAKTIKQSGEGLISLINDILDFSKIEAGDLDFEEIDFDPELLAYDICDMIRPRI 597

Query: 663 HENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGD 718
            E  I I     D        D  R+ Q+ + +++NA  F+  G  + L       D G 
Sbjct: 598 GEKPIEILCHIGDTVPDHIKGDPTRVRQVLTNLMANAPKFTEAGE-IELSLDVEEEDEGR 656

Query: 719 FIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                SV++ G  I  +  + +F+ F        R   G GLGLSI +    L GG V  
Sbjct: 657 VKLHASVRDTGIGIAGNKLELIFDPFQQADGSTTRKYGGTGLGLSICKQISRLMGGDVWA 716

Query: 775 SSSDEGVTTINCR 787
            S +   +  +  
Sbjct: 717 ESDEGKGSIFHFT 729


>gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
 gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
          Length = 646

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 158/406 (38%), Gaps = 10/406 (2%)

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           PN   + V   +          E++  + +   +           +  + + V     +G
Sbjct: 170 PNAIVMPVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANG 229

Query: 455 RIKLSNPAFRSLWKTEENRLSPG-----THIRNIAATCSRYYN-ESDGWDLFAAIITSFD 508
           R+  ++ +       E +RL         HI +  A      +  + G           D
Sbjct: 230 RVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLD 289

Query: 509 DERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             R     T+   +    +E  +     +  +    +V++  R  + L        +ADE
Sbjct: 290 AARGDGSRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADE 349

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVND 626
           +K  F+  VS+ELR+PL  IIGF+D+L      SL+ ++  +Y   I+ S   LL++VN 
Sbjct: 350 VKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLLDVVNT 409

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ +  G        + +  L+      +  K   + I +         + VAD + 
Sbjct: 410 LLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALVADARA 469

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-- 744
             Q+   ++SNA+ F+ +G  V +   R        V ++G  I E     + + F    
Sbjct: 470 CRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEADLPRLGDPFFQVG 529

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +     G GLGLS+V     LHGG VS+ S+    T +   +P 
Sbjct: 530 GGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575


>gi|167994521|ref|ZP_02575612.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327619|gb|EDZ14383.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248493|emb|CBG26330.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995527|gb|ACY90412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301159877|emb|CBW19396.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131688|gb|ADX19118.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990186|gb|AEF09169.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 778

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|300868783|ref|ZP_07113392.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300333219|emb|CBN58584.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 680

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 143/322 (44%), Gaps = 45/322 (13%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
           + L   LE L D  L  ++  L + Q +   + + +  +   A+    E LR        
Sbjct: 348 RDLARPLEKLRDYAL--TVKSLESPQMVPHNLKIREFDQLAEAIDSMVERLRSWAEELEV 405

Query: 566 --------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                   +++K+ F++++S+ELR+PL  IIGF   ++       + +  ++V+    ++
Sbjct: 406 ASKQAQVANQLKDEFLRNISHELRTPLNGIIGFLQFVQDGDCDDRDEEM-EFVQRAYDAA 464

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLN++NDILD+A +++G + +   TI L  ++ E       ++ +  + + +    + 
Sbjct: 465 IHLLNIINDILDIAKIESGTLSMMLETINLTQVIEEAVDLQVVEVEQKGLELILPDLKEP 524

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------------------- 715
               AD  +L Q+F  +LSNA+ F+  G  + +    +                      
Sbjct: 525 IMVYADPDKLKQVFLNVLSNAIKFTDSG-KITISIRLESVLLNNGASYNGNAVYNMAQVT 583

Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGH 771
                 + ++++ G  I ++    +F  FV    +   +  G GLGL+I  + + L  G 
Sbjct: 584 GTKDWVVVTIEDTGIGIDQEQQDKLFQPFVMADGSTTRKYGGNGLGLAISRNLMQLMAGT 643

Query: 772 VSISSSD-EGVTTINCRIPSKE 792
           +S+ S+     TT+   +P+K+
Sbjct: 644 ISLYSAGINQGTTLTIALPAKQ 665


>gi|323495069|ref|ZP_08100158.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323310726|gb|EGA63901.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 1039

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 169/391 (43%), Gaps = 21/391 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E + ++   E     L +     +D  ++G+      GRI   N A + ++   E   
Sbjct: 353 LDEEIDLKRQSEQTQTLLSQKLEAILDTAADGIVTIDKQGRILSFNQAAQMMFGYTEQE- 411

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFA---AIITSFDDERKSLQGTLELLSDS----VLE 527
           + G  +  +        ++       A     I    D+   L   L+ ++       + 
Sbjct: 412 AIGMPVEVLMPATEAARHQGHIEKYLATGKGKIIGVTDQDGRLGRELQAINKQGHTFPIL 471

Query: 528 YSIIPLPNAQTM---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            SI  +  A  +       +++   +AE AL    E   +A + K+ F+  +S+E+R+P+
Sbjct: 472 LSIARVETADGILFSGLIKDISIQKQAELALITAKEQAEQAAKSKSEFLAVMSHEIRTPM 531

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG  DLL  + L +  S Q+      + S   LL   NDILD + +DA  ++L    
Sbjct: 532 NGIIGMLDLLLENDLNNSQSHQAYLAHSSALSLLALL---NDILDFSKIDANKLELEQQH 588

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             L  +L E  +S+A  +   N+ I +   + +    + D  R+ QIF+ ++SNA+ F+ 
Sbjct: 589 FNLRHMLGEFAESMAASLTNPNVEIILDTIEVEHSMVLGDSTRIRQIFANLVSNALKFTE 648

Query: 704 KGSTVILK--AARDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           +G  VI    +  D   +    S+K++G  IP     S+F++F        RR  G GLG
Sbjct: 649 RGEVVITAKLSEHDANTWRLDGSIKDSGIGIPSSRINSLFDKFSQVDASTTRRYGGTGLG 708

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+IV+    +  G V ++S     +  +  I
Sbjct: 709 LAIVKKLCQIMHGDVDVTSEVGMGSEFSFHI 739



 Score = 38.8 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 9/170 (5%)

Query: 293 IDVSKEITVNDQL--THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           ID+ ++      L       IL      I   D+   +   N++   ++          P
Sbjct: 357 IDLKRQSEQTQTLLSQKLEAILDTAADGIVTIDKQGRILSFNQAAQMMFGYTEQEAIGMP 416

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVTSNP 408
               +     + ++   +    T K  I  V              N  G T  ++++   
Sbjct: 417 VEVLMPATEAARHQGHIEKYLATGKGKIIGVTDQDGRLGRELQAINKQGHTFPILLSIAR 476

Query: 409 ---RGGTIW--MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                G ++  + +++++Q   E    T  +   +     SE +AV   +
Sbjct: 477 VETADGILFSGLIKDISIQKQAELALITAKEQAEQAAKSKSEFLAVMSHE 526


>gi|229084578|ref|ZP_04216848.1| hypothetical protein bcere0022_12120 [Bacillus cereus Rock3-44]
 gi|228698728|gb|EEL51443.1| hypothetical protein bcere0022_12120 [Bacillus cereus Rock3-44]
          Length = 450

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +G + + NP         E+ L      + +  + 
Sbjct: 108 ALQQEKEQLSSILSSMADGVVTLNQEGEVVVINPPA-------EHFLQVWQEEKELELSR 160

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           S      +  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 161 SL---PPELVELFHLVVES--EQQQVIEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 212

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 213 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDVV-QTKEEIN 261

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+ S + ++  + ++ +       +  +
Sbjct: 262 EFVQIIYDESVRLGRLVNELLDLARMESGHVELHISEVDIHPFVEKIGRKFQGIAQDKGV 321

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++ V    ++     D  R+ Q+ + ++ NA+  +  G  V L     N   IF V+++G
Sbjct: 322 QLTVDFRNQVVEHPFDPDRMEQVLTNLIDNAIRHTDAGGHVKLVIDTKNNGLIFEVQDSG 381

Query: 728 SSIPEDMCKSVFNRFVSNAHR---------GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF               G         +I ++ +  H G VSISS  
Sbjct: 382 AGIPEEDIPFLFDRFYKADKARTRGKTGGTGLGL------AIAKNIVQGHDGKVSISSVV 435

Query: 779 EGVTTINCRIPSK 791
              T  +  +P +
Sbjct: 436 GEGTIFSVYLPGQ 448


>gi|124022255|ref|YP_001016562.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9303]
 gi|123962541|gb|ABM77297.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 685

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 161/395 (40%), Gaps = 50/395 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  R L++ E   L     +  +   
Sbjct: 289 EELTAAQVKQQSLIATMADGALLLDEVGQIVLANPTARRLFRWEGRNLEGQELLNELPEI 348

Query: 487 CSRYYNESDGWDLFA-----AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   ++     L        +  S ++  ++L+  L+ + D           + +T+  
Sbjct: 349 IANELHDPLQSLLRNIGESNDLRCSLEEPTRTLRIVLQSVRDQ----------SGETLKG 398

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L       
Sbjct: 399 IAITVQDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDLGDQL 448

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              ++ +++   ++ +  L  LVND+LDL+ +++G   + +  + L   + +  ++    
Sbjct: 449 SEEEKKEFLGVANSETDRLARLVNDVLDLSRLESGR-TVQFEPMDLRPAIEQTLRNYRLN 507

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
             +  I I++ +D +L + + +   LLQ+   ++ N + FS  G +++++A         
Sbjct: 508 ADDKQIHIELNTDDELPTILGNWDLLLQVLDNLVGNGLKFSRAGGSLMVRAYTWPDSCKM 567

Query: 718 -------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLG 757
                                   V + G  I +D  + +F+RF    +      G GLG
Sbjct: 568 SPIESSKSAPHCEFFSPLPKLRVEVADTGHGINQDDQQHIFDRFYRVENAVHTEAGTGLG 627

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LSIV   I  HGG + ++S  +  TT    +P ++
Sbjct: 628 LSIVRGIIEKHGGQIRMASEVDLGTTFWFDLPLEQ 662



 Score = 41.5 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 84/273 (30%), Gaps = 32/273 (11%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW-ANISYKKNTETE----------- 229
             +   +  H++    L D    LVW  D  G +    N +                   
Sbjct: 159 RPENALIRQHLTPQGQLTDVFVPLVWKGDYLGTLALGVNPNDTALASAALTRQVTIAVFI 218

Query: 230 ---GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
               +V   A+  +  + +   +      +    NF   ++    G     +++   N+ 
Sbjct: 219 SIWVLVILGAVFNALTITQPVKELLRGVRAIASGNFEARIALPMGGE--LGELLNGFNAM 276

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
                A D +    +         ++  +     + D+   +   N +   L+  +   L
Sbjct: 277 ASQLEAYDAANIEELTAAQVKQQSLIATMADGALLLDEVGQIVLANPTARRLFRWEGRNL 336

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                 +EL E + +    P        +  + ++ +S++           +TL +++ S
Sbjct: 337 EGQELLNELPEIIANELHDP-------LQSLLRNIGESNDLRCSLEEPT--RTLRIVLQS 387

Query: 407 NPR------GGTIWMFENLTVQVDLETKYNTLV 433
                     G     ++LT +V+L    +  +
Sbjct: 388 VRDQSGETLKGIAITVQDLTREVELNAAQSRFI 420


>gi|161830206|ref|YP_001596560.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 331]
 gi|215919011|ref|NP_819664.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 493]
 gi|161762073|gb|ABX77715.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 331]
 gi|206583896|gb|AAO90178.2| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 630

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/428 (22%), Positives = 185/428 (43%), Gaps = 37/428 (8%)

Query: 387 THKDTWHLP--------NGQTLHVIVTSNP----RGGTIWMFENLTVQVDLETKYNTLVK 434
             ++ W LP        + + +   V S P    + G +   + ++  V+    +     
Sbjct: 69  AVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYMLTGQVISKSVNASQIF----- 123

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                + ++ + +     +      N  F  L   E      G    ++    S+  N  
Sbjct: 124 -LENILYNIPQYILWKDRNFVYLGCNHNFAKLVGFETPESIIGKTDFDL--WRSQGANSI 180

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSV 549
              D+         D  +SL   L    + V   S +PL + +      ++   ++T+  
Sbjct: 181 RPTDVEVLEGKQLVDVEQSLS--LPNGKEGVFLISKVPLRDERNEIIGILVVGTDITERK 238

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ L E       +D  K+ F+ ++S++LR+P+  I+G   +    +      KQ   
Sbjct: 239 QNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEH---TKKQEPL 295

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +SAS+ +LL LV DILD A ++ G ++L YST  L  L+  + ++ + +  +  I+I
Sbjct: 296 INDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQQKQIKI 355

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKN 725
            V  D  L  S V++   + +IF  ++ NA+ F+ KG  + +    +          VK+
Sbjct: 356 NVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKG-QIDVTVNLEGNKPAMLKILVKD 414

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D   ++F+RF      +  +  G+GLGLSI++  ++  GG V +SS +   +T
Sbjct: 415 TGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSIENEGST 474

Query: 784 INCRIPSK 791
               IP +
Sbjct: 475 FTLTIPCE 482


>gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075462|gb|ADJ64861.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1160

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 132/259 (50%), Gaps = 5/259 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT L  +   D  + +  L EK   L +A++ K+ F+ ++S+ELR+PL + +    LL
Sbjct: 441 EEQTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLL 500

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +K G+L+ +Q ++ + IS++   LL L+NDILDL+ ++AG + +   +  L  L +E+
Sbjct: 501 ADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADEL 560

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             S A    +  +  KV  +  +      D QRL QI   +LSNA+ F+ KG  V L+  
Sbjct: 561 SASFAITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGE-VSLRIY 619

Query: 714 RD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
            D  G   F+V++ G  I ED  + +F  F         +  G GLGLSI     +L GG
Sbjct: 620 PDAGGRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGG 679

Query: 771 HVSISSSDEGVTTINCRIP 789
            + ++S     +     +P
Sbjct: 680 DIRVTSRLGEGSIFTLSLP 698


>gi|269962916|ref|ZP_06177255.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832361|gb|EEZ86481.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 566

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 130/260 (50%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  +   ++   S+  E  L ++ E    +++    FV  +++ELR+PL  ++G  +LL 
Sbjct: 175 SDLVHGVISRHLSLEREVELRKRAE---ASEKATKEFVAMINHELRTPLNGVLGSAELLS 231

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++LG    +Q QY+  +  S  +L  ++ND+LD + ++AG+M++        DL N + 
Sbjct: 232 KTELGD---EQQQYLGNLIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALT 288

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              A K  E  I   +     +  F V D +R+ QI   ++ NA+ F+  G  V L+   
Sbjct: 289 GVFAAKAAEKRIHFSIDKKLGIPEFLVGDFERITQILVNLIGNAIKFTHLGGVV-LRVEW 347

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
            +G   F V++ G  IP +  K++F+ FV      +R   G GLGL+I ++ ++L  G +
Sbjct: 348 VDGYAHFEVEDTGIGIPFEAQKALFDPFVQADRSTKRSFEGSGLGLAICKNLVDLMDGEI 407

Query: 773 SISSSDEGVTTINCRIPSKE 792
           S  S     TT    +P K+
Sbjct: 408 SFVSEPRKGTTFKVVLPLKQ 427


>gi|197295473|ref|YP_002154014.1| hybrid two-component system kinase-response regulator protein
            [Burkholderia cenocepacia J2315]
 gi|195944952|emb|CAR57564.1| hybrid two-component system kinase-response regulator protein
            [Burkholderia cenocepacia J2315]
          Length = 1380

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/504 (16%), Positives = 181/504 (35%), Gaps = 17/504 (3%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            ++           + I+ +  +A    D+   ++    +   ++ +    L        L
Sbjct: 747  ARIEDTAKANDDLHNIIASSEIATVFVDKEIRVKRFTPNATAIFNLIDTDLG-----RSL 801

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                 +        + +   +++  + +  E+    W+L   + L      +   G +  
Sbjct: 802  FHITHALRYPTLADDVRQSFQSLRLIEREIESEAGRWYLM--RLLPYRTADDHIDGAVIT 859

Query: 416  FENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              ++T +   E       +          +  + +   +G I   N     ++   E  +
Sbjct: 860  LIDITDRHHAEEAARAGEQRLRLVAQSTKDYAIIIQDGNGAIVSWNAGAERIFGYTEEEM 919

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIP 532
              G  +  I     R           A      DDER  ++  G     S  V   S   
Sbjct: 920  -IGQDVELIYEPNDRQALVPMREREVATREGRADDERWHRTKDGRRIFCSGVVTPISDTS 978

Query: 533  LPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                  ++  +     +   +  A        E    ++++K+ F+  +S+ELR PL  I
Sbjct: 979  FNGFAKIVRDMTLRKQSDDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLI 1038

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
               +++L             +  + I  +      +++D+LDL+ +  G + L    + L
Sbjct: 1039 GVKSEMLPRLPETRDIPAVREAADSIRQAVRAQAQIIDDLLDLSRIQTGKLALELGRVDL 1098

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              +L  +  +    +H   + +K     +    +AD  R  QIF  ++SNA+ F+     
Sbjct: 1099 TAMLRGIADTCERDVHARGLVLKTELPTEPAIALADPVRCEQIFWNLMSNALKFTQSHGE 1158

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            ++++ A +       V ++G  I  D    VF+ F        R G+G+GL++V   + +
Sbjct: 1159 IVVRLAHEGRMLRVDVIDDGQGIDGDTLPHVFDMFRQAPRDRTRGGLGIGLALVRQLVEM 1218

Query: 768  HGGHVSISSSD-EGVTTINCRIPS 790
            HGG ++ +S      TT+   +P+
Sbjct: 1219 HGGRIAAASDGQGRGTTMTVWLPA 1242


>gi|78358820|ref|YP_390269.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221225|gb|ABB40574.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 606

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 143/362 (39%), Gaps = 23/362 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                +D +++GV V   +GRI   N A   ++               +     +  +  
Sbjct: 255 RLEAILDGITDGVMVLDEEGRIHSVNTALTDMFPQVAGMEGATPLEATMQPDLQKAVDAM 314

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTDSVRAER 553
              D   +     D  R      +EL     +E +++P  + A T    +   D    E+
Sbjct: 315 LRSDTAHSGQPMPDTGRV---CNVELSGGRYMEITLVPFADPAGTRKIVLAFHDVSEREQ 371

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                       ++++  FV +VS+EL++PLT+I G+T++L  S       + S +++ I
Sbjct: 372 L-----------EKVRRDFVANVSHELKTPLTSIKGYTEMLIESPPAG-REQNSMFLQTI 419

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  ++ +VN +L LA       +   S +    ++ +  + +    HE NI I+   
Sbjct: 420 LKNANHMIKMVNSLLVLARAQHKREQTAMSAVDAAAVIRQTVREMDPAAHEKNISIETQM 479

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                    DR  L ++F  +L NA+ +S   S V + A    G   F +K++G  IPE 
Sbjct: 480 PETPLMVTGDRDALCEVFRNLLDNAVKYSPNNSAVTVSARITEGRAAFCIKDSGPGIPEA 539

Query: 734 MCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSD----EGVTTINC 786
             + +F RF          +    GLGL+I    +  HGG + + S              
Sbjct: 540 SKERIFERFYRLDRDGDTHKNGSAGLGLAICRRIVKSHGGEIWVESPLDSKTGSGAAFFV 599

Query: 787 RI 788
            +
Sbjct: 600 TL 601



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 65/202 (32%), Gaps = 31/202 (15%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT 300
           R L +        + +  + ++   +        +   +V  +N      +A +  +++ 
Sbjct: 195 RSLVRSIEDLAATAHAIGQGDYARKIRDYPGTELR--PLVDAIND-----MAKNTRRQMQ 247

Query: 301 -VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + DQ      IL  +T  + + D+   +   N +  +++          P    +    
Sbjct: 248 MLTDQKGRLEAILDGITDGVMVLDEEGRIHSVNTALTDMFPQVAGMEGATPLEATM---- 303

Query: 360 RSANKLPEQLNWKTWKENIFS--VYKSSETHKDT-----WHLPNGQTLHVIVTS--NPRG 410
                   Q + +   + +       S +   DT       L  G+ + + +    +P G
Sbjct: 304 --------QPDLQKAVDAMLRSDTAHSGQPMPDTGRVCNVELSGGRYMEITLVPFADPAG 355

Query: 411 G--TIWMFENLTVQVDLETKYN 430
               +  F +++ +  LE    
Sbjct: 356 TRKIVLAFHDVSEREQLEKVRR 377


>gi|15642366|ref|NP_231999.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121588205|ref|ZP_01677949.1| sensor histidine kinase FexB [Vibrio cholerae 2740-80]
 gi|153819138|ref|ZP_01971805.1| sensor histidine kinase FexB [Vibrio cholerae NCTC 8457]
 gi|153822770|ref|ZP_01975437.1| sensor histidine kinase FexB [Vibrio cholerae B33]
 gi|227082493|ref|YP_002811044.1| sensor histidine kinase FexB [Vibrio cholerae M66-2]
 gi|229507565|ref|ZP_04397070.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae BX
           330286]
 gi|229512239|ref|ZP_04401718.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           B33]
 gi|229519375|ref|ZP_04408818.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC9]
 gi|229607071|ref|YP_002877719.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           MJ-1236]
 gi|254849491|ref|ZP_05238841.1| sensor histidine kinase FexB [Vibrio cholerae MO10]
 gi|255746952|ref|ZP_05420897.1| aerobic respiration control sensor protein ArcB [Vibrio cholera
           CIRS 101]
 gi|262161504|ref|ZP_06030614.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           INDRE 91/1]
 gi|9656939|gb|AAF95512.1| sensor histidine kinase FexB [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547547|gb|EAX57650.1| sensor histidine kinase FexB [Vibrio cholerae 2740-80]
 gi|126510328|gb|EAZ72922.1| sensor histidine kinase FexB [Vibrio cholerae NCTC 8457]
 gi|126519715|gb|EAZ76938.1| sensor histidine kinase FexB [Vibrio cholerae B33]
 gi|227010381|gb|ACP06593.1| sensor histidine kinase FexB [Vibrio cholerae M66-2]
 gi|229344064|gb|EEO09039.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC9]
 gi|229352204|gb|EEO17145.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           B33]
 gi|229355070|gb|EEO19991.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae BX
           330286]
 gi|229369726|gb|ACQ60149.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           MJ-1236]
 gi|254845196|gb|EET23610.1| sensor histidine kinase FexB [Vibrio cholerae MO10]
 gi|255735354|gb|EET90754.1| aerobic respiration control sensor protein ArcB [Vibrio cholera
           CIRS 101]
 gi|262028815|gb|EEY47469.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           INDRE 91/1]
          Length = 785

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii Ech703]
 gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703]
          Length = 934

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 114/598 (19%), Positives = 234/598 (39%), Gaps = 70/598 (11%)

Query: 214 DILWANISYKKNTE----TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
            + + + + +   +       +     +   ++  +++   R+         +     + 
Sbjct: 127 RLFFVDNAQQCIVDFGIRNPSLDRDGLLRNVQEHLQDQQTNRLTGRRDDSLFWIIPGPSP 186

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
           + G    Y +  V     +    I + + I ++D +       ++L + + + DQN    
Sbjct: 187 DTG--YLYSLTPVYVDN-QLVTTIGIEQAIRLDDFVLS-----NDLPLGVKLLDQN---- 234

Query: 330 FHNRSFVELWEIDLAFLATN--PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
             N+  ++L       + +N  P   +   ++   N L   +  K       SV  S   
Sbjct: 235 --NKPLLQL----ADGVGSNLYPDALDYFGYIDGYNTL---IMKKALPPTTLSVVYSL-P 284

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLETKYNTLVKVQGETID 441
            +      N Q +++++ +      + +   L  +           +     +   + + 
Sbjct: 285 LESILATLNSQIVNLVLLNLAGAIVLLVLTRLFERRIFLPAERNALQLEENEQFNRKIVA 344

Query: 442 HLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
               G+++    DG   +SN    +                N+ A   R           
Sbjct: 345 SAPVGISILRISDGTNIISNELAHNYL--------------NLLAYEDR----------- 379

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTE 557
              IT    E++S    +    +  L+ S +          +   ++V+  VR E +L E
Sbjct: 380 -TRITKIICEQQSKSLDVVTSRNHHLQISFVHSRYRNENVAICVLLDVSARVRMEESLQE 438

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL+   ++ VE +  SS
Sbjct: 439 MANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK---SLSRDANRLVEAMQNSS 495

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           ++LL +++DILD + +++  +K+        +++N +  +    + +  + +    +  +
Sbjct: 496 SLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYLPLVVKKRLTLYCYIEPSV 555

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             S + D  RL Q+ S +LSNA+ F+  G  V+    R +G   F V++ G  I      
Sbjct: 556 PVSILGDAVRLQQVLSNLLSNAIKFTDTGCIVLQVQRRHDGYLAFQVRDTGVGIEPRSVM 615

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F+ F       QR  +G GLGL+I E  ++L  G +SI S     +    RIP  +
Sbjct: 616 KLFDPFYQAGTGVQRHFQGTGLGLAICEKLVSLMDGDISIESEPGLGSLFGVRIPLYQ 673


>gi|300778577|ref|ZP_07088435.1| sensor histidine kinase/response regulator fusion protein
           [Chryseobacterium gleum ATCC 35910]
 gi|300504087|gb|EFK35227.1| sensor histidine kinase/response regulator fusion protein
           [Chryseobacterium gleum ATCC 35910]
          Length = 1202

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 14/314 (4%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +    S   N +   +     + + ++E K  Q  L   +  + E S +       + 
Sbjct: 447 EELQVQHSELENLNTELEAQTQKLQASEEELKVQQEELMQANAELEERSRLLEEKNHLIA 506

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              N       E AL+          + K+ F+ ++S+ELR+PL +I+  + L+  +   
Sbjct: 507 ERNNEIQKKVEELALST---------KYKSEFLANMSHELRTPLNSILLLSRLMTENPDE 557

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +LN  Q +    I +S + LL L+++ILDLA +++G M L Y  +++ +++ ++K     
Sbjct: 558 NLNEDQVESARVIHSSGSSLLTLIDEILDLAKIESGKMTLEYQKVIIEEVVKDLKSLFNP 617

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNG 717
              E  +   ++ D  +   + +DR R+ Q+   +LSNA+ F++KGS    I K      
Sbjct: 618 VFQEKALPFNIVIDEDVQKVIESDRLRIDQVLRNLLSNALKFTTKGSIDLHIRKHTEKPD 677

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
             IFSVK+ G  I ED  K +F  F       +R   G GLGLSI      L GG + + 
Sbjct: 678 FIIFSVKDTGVGIAEDKQKIIFEAFQQADGSTKRKFGGTGLGLSISREIARLLGGELVLK 737

Query: 776 SSDEGVTTINCRIP 789
           S  +  +  +  IP
Sbjct: 738 SEVDKGSEFSFIIP 751


>gi|170741718|ref|YP_001770373.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195992|gb|ACA17939.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 984

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/506 (18%), Positives = 188/506 (37%), Gaps = 13/506 (2%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +             +L N  V +   D++  ++  NR+   + E  L      P    LL
Sbjct: 210 RRREGRRTAALLAGVLENAPVGLGFLDRDLTIRHMNRALESMSERGLGTGVGEP-IWALL 268

Query: 357 EFLRSAN--KLPEQLNWKTWKENI-FSVYKSSETHKDTWHLPNGQTLH--VIVTSNPRGG 411
             LR A   KL    +      N+   V   S      +   +   L   V   +    G
Sbjct: 269 PSLRDALAPKLAAARDEGLVTANVEVGVPTPSAPGSVRYFQMSFFPLRRDVDDRAARAEG 328

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              +  ++T++   E +     +      +  S  V    P+G        +        
Sbjct: 329 VGLVMSDVTLRKLSEARTRESEERFRSLTEATSAIVWRTTPEGTFAQVTSEWTRFTGQTP 388

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
              +    +  +          +    +    + + +   +   G    +    +     
Sbjct: 389 EEAAGLGFLDAVHPEDRAATRAAWEQAVATHALYAIEHRLRRHDGIYRHMEVRAVPILEK 448

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                + +    + T    AE AL    EA  +A+  K+ F+ ++S+ELR+PL+ +IG+ 
Sbjct: 449 DGRVREWVGAHADTTARKEAELALEAAREAAEEANAAKSQFLANMSHELRTPLSAVIGYA 508

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L+        S     +  I A++  LL L+ND+LD++ ++A  M++      +   L
Sbjct: 509 EMLQEEMEDLGASALLPDMRKIEANARHLLGLINDVLDISKIEAERMEVYAEDFDVAATL 568

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +V  ++ + + + +  + +     LG    D  +L Q    +LSNA  F+ +G  ++L 
Sbjct: 569 QDVGATVGSLIAKKDNALVLDLAEGLGRAHTDVTKLRQCLINLLSNAAKFT-EGGRIVLS 627

Query: 712 AA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           A            F V + G  +  +    +F RF        RR  G GLGL+I  +F+
Sbjct: 628 AERLRRDGRDRLRFRVADTGIGMSAEQQARLFERFTQADASTTRRFGGTGLGLAITRAFV 687

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            + GG +++ S     TT    +P +
Sbjct: 688 EMLGGAIAVESRAGEGTTFTIELPVR 713


>gi|84393237|ref|ZP_00991999.1| sensor histidine kinase FexB [Vibrio splendidus 12B01]
 gi|84376143|gb|EAP93029.1| sensor histidine kinase FexB [Vibrio splendidus 12B01]
          Length = 813

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L    E  L   T  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNEDGVFSGCNRAVEELTGKTEKDLVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   E+D          ++D   +   G       S  E   +P  + +   
Sbjct: 202 DVYSKEIAQQVVETDKKVFADNQALTYDQWLEYPDG-----RKSYFELRKVPFYSKEGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER   E  E+L KA   K +F+  +S+ELR+PL  IIG + +L  S+  
Sbjct: 257 LGLVGFGRDITER--KEHQESLEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQ-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q + ++ I  S+  L N+ NDI+D+   D   ++L  + +   D + E++   A 
Sbjct: 313 -LTTEQRKQMQTIKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPLNFEDFVVEIESISAL 371

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L +    D  RL Q+   ++SNAM F+  G  V  + A  D   
Sbjct: 372 MAEQKGLRFDLERLSDLPAAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSAEIDGDF 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++ +  IN+  GH+ 
Sbjct: 432 ANITMEVEDTGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLINMMDGHIE 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VTSEEGFGSTFTVSI 506



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R++ G     N + ++ T   G  
Sbjct: 135 DLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNEDGVFSGCNRAVEELT---GKT 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVL--- 283
            +  +G +   ++ +EI ++++ +        +    +       G    +++ +V    
Sbjct: 192 EKDLVGLTPWDVYSKEIAQQVVETDKKVFADNQALTYDQWLEYPDGRKSYFELRKVPFYS 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KEGRHLGLVGFGRDITERKEHQESLEK 278


>gi|114319827|ref|YP_741510.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226221|gb|ABI56020.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 917

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 20/340 (5%)

Query: 459 SNPAFRSLWKTEENRLSPGTHIR-NIAATCSRYYNESDGWDLFAAIITSF-DDERKSLQG 516
           S  AF S  +    +L    H R  +     R  + S G      +++S    E  S +G
Sbjct: 575 SRAAFTSYAEEHGLQLHERDHARPELVGYAERLLSGSIGSASARVMVSSIIKGEALSFEG 634

Query: 517 TLELLSD--SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            +E+L      +EYS                 +   A   L   NE L++ D +K+ FV 
Sbjct: 635 VMEILDATSRAIEYS---------RRLEQKSRELEMATDELRRANERLKELDHLKDEFVS 685

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATV 633
            VS+ELR+PLT+I  F ++L ++    L+++Q  ++++ +   S  L  L+N +LDL+ +
Sbjct: 686 MVSHELRTPLTSIRAFGEILLSNP--ELDAEQRKEFLQVVVKESERLTRLINQVLDLSKI 743

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G  + +  T+ LN ++ E   +     H+  + ++V +  +      D  RL+Q+   
Sbjct: 744 ESGAAEWHLETLDLNQVVQEAADATRQIFHDTRVDLQVKAPEQPTIITGDHDRLIQLVIN 803

Query: 694 ILSNAMDFS-SKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
           +LSNA  F+      V +     +       V++NG  I E   + +F++F   + +  G
Sbjct: 804 LLSNAAKFTDPDNGRVEVSVVPVSARKLELRVQDNGPGISEAEQRKIFDKFHQVSSQQAG 863

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +G GLGL+I +  ++ H G + + S      T  C  P
Sbjct: 864 KPKGSGLGLAICKLIMDAHSGDIRVESEPGAGATFICEFP 903


>gi|323492021|ref|ZP_08097186.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
 gi|323313750|gb|EGA66849.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
          Length = 1128

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 12/289 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ E         + +L      +     + + ++NE L
Sbjct: 403 INTQRKDEIGRLAVSFERMQRSIRE---------KILLIKDQNEELESNLKLIQKQNEEL 453

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+++K+ F+   S+ELR+PL  ++G  + L +   G + ++    ++ I +S   L  
Sbjct: 454 QLANKLKDEFLATTSHELRTPLHGMVGIAEALASGANGPITAEHKYQLDIIISSGQRLAT 513

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LD   +  G + +  S + L+     V +  +  +    IRI      +     A
Sbjct: 514 LVDDLLDYHKMRYGNLDIETSAVDLSGSTRLVLELSSHLLGNKPIRIINQVPSEPVWVSA 573

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP D  + +F   
Sbjct: 574 DPQRLEQVLYNLVGNAIKYTSEG-KIVISANVVDDQIRVQVVDTGQGIPADQLEHIFEPL 632

Query: 743 VSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +         R+G GLGLSI    I L  G + +SS     TT +  +P
Sbjct: 633 IQAGSDSSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLP 681


>gi|323137621|ref|ZP_08072698.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397247|gb|EFX99771.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 501

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/506 (19%), Positives = 184/506 (36%), Gaps = 40/506 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 + N+ VA A+FD +      +      W +D         N       R    L
Sbjct: 4   AELQAFIENMPVAAAMFDCDMNYVAMSPR----WRVDYERAGDPREN-------RHREIL 52

Query: 366 PEQLNWKTWKENIFSVY--KSSETHKDTWHLPNGQTLHVI-------VTSNPRGGTIWMF 416
           PE      W+E    V   ++  +  D +   +G    V          S    G + + 
Sbjct: 53  PEIPQR--WREARSRVLGGETVISPADRFERADGSIQWVRWEFMPWRAASGEICGVVILA 110

Query: 417 ENLTVQVDLETKYNTLV---KVQGETID----HLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           E++T +   +            Q + I+    +   G+     D R    N     +   
Sbjct: 111 EDVTGRELADAALRDEAVETDRQRDQIEWLYENAPIGLCHLDRDLRYLCVNRWLAEINGL 170

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
                  G  +R +A   +    ES    L      +  D     +             S
Sbjct: 171 -PIEAHIGRRVREVAPALAPGIEESARKILSTG--EALRDIEFRGRAPRPPGVARYFSLS 227

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + P  +++  +   NV      E+    +  AL + D  K+ F+  +++ELR+PL  I  
Sbjct: 228 LHPAFDSEGQIIGFNVVVHEVTEKK---RIHALCETDRRKDEFLATLAHELRNPLAPIKN 284

Query: 590 FTDLLK--TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
              +L+       +   K+   +E        +  LV+D+L++  +  G ++L  +   L
Sbjct: 285 AVHVLRLLEDDDSATKEKRRAALERAGRQVDHMARLVDDLLEITRISHGKVELRKARTDL 344

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             +L +       ++   + R+ V    +      D  RL Q+F+ +++NA  ++  G  
Sbjct: 345 AAILTQAIDLSQPQIQAGSHRLAVDLSTEPLQIDGDPVRLAQVFTNLINNAARYTDAGGR 404

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           + + AARD  + + +V++NG  IP     S+F  F       R    G+G+GL++  S +
Sbjct: 405 IEIAAARDGEEAVVTVRDNGIGIPRQQLSSIFEMFAQVEPTCRRAPGGIGVGLALARSVV 464

Query: 766 NLHGGHVSISSSD-EGVTTINCRIPS 790
            LHGG +   S      +    R+P 
Sbjct: 465 QLHGGRIEARSEGVGRGSEFIVRLPL 490



 Score = 38.0 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 48/170 (28%), Gaps = 18/170 (10%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
           +  +   +++       D   + +  +  ++ + E  G   +    E      +  ++  
Sbjct: 4   AELQAFIENMPVAAAMFDCDMNYVAMSPRWRVDYERAGDPRENRHREILPEIPQRWREAR 63

Query: 253 ISSSALEK-----NFCETVSTLEHGNNKSYKIVRVLNSF--GEAGIAIDVS--------- 296
                 E      +  E            +   R  +    G   +A DV+         
Sbjct: 64  SRVLGGETVISPADRFERADGSIQWVRWEFMPWRAASGEICGVVILAEDVTGRELADAAL 123

Query: 297 --KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             + +  + Q      +  N  + +   D++      NR   E+  + + 
Sbjct: 124 RDEAVETDRQRDQIEWLYENAPIGLCHLDRDLRYLCVNRWLAEINGLPIE 173


>gi|301052639|ref|YP_003790850.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374808|gb|ADK03712.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 896

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFGATNISDMAASMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|300773123|ref|ZP_07082992.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759294|gb|EFK56121.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 1198

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 16/316 (5%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             + A  S   N +   +     + + ++E +  Q  L L S+  LE     L     ++
Sbjct: 447 EELQAQHSELENLNTELEAQTQKLQASEEELRVQQEEL-LQSNQELEERSKLLEEKNHLI 505

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              N+    +AE         L  + + K+ F+ ++S+ELR+PL +I+  + LL  +   
Sbjct: 506 AERNLEIQEKAEE--------LALSTKYKSEFLANMSHELRTPLNSILLLSRLLSENTDD 557

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +LN  Q +  + I +S T LL+L+++ILDL+ ++AG M+L Y  + L+D+  E+    A 
Sbjct: 558 NLNEDQIESAKVIQSSGTSLLSLIDEILDLSKIEAGKMELEYQHVKLSDVTQELNSLFAP 617

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--- 716
            + E  + + ++    L  +   DR RL Q+   +LSNA+ F+SKGS + L    +    
Sbjct: 618 IVKEKALDLNIVVQPDLDSTIETDRLRLDQVLRNLLSNAIKFTSKGS-ITLTITEEQSNR 676

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
            + +F+VK+ G  I E+  K +F  F       +R   G GLGLSI      L GG + +
Sbjct: 677 NNIVFAVKDTGIGIAEEKQKIIFEAFQQADGSTRRKFGGTGLGLSISREIARLLGGEIRL 736

Query: 775 SSSDEGVTTINCRIPS 790
            S +   +  +  IP 
Sbjct: 737 QSKENEGSIFSLIIPK 752


>gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
 gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
          Length = 646

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 158/406 (38%), Gaps = 10/406 (2%)

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           PN   + V   +          E++  + +   +           +  + + V     +G
Sbjct: 170 PNAIVMPVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANG 229

Query: 455 RIKLSNPAFRSLWKTEENRLSPG-----THIRNIAATCSRYYN-ESDGWDLFAAIITSFD 508
           R+  ++ +       E +RL         HI +  A      +  + G           D
Sbjct: 230 RVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLD 289

Query: 509 DERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             R     T+   +    +E  +     +  +    +V++  R  + L        +ADE
Sbjct: 290 AARGDGSRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADE 349

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVND 626
           +K  F+  VS+ELR+PL  IIGF+D+L      SL+ ++  +Y   I+ S   LL++VN 
Sbjct: 350 VKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLLDVVNT 409

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ +  G        + +  L+      +  K   + I +         + VAD + 
Sbjct: 410 LLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALVADARA 469

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-- 744
             Q+   ++SNA+ F+ +G  V +   R        V ++G  I E     + + F    
Sbjct: 470 CRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEADLPRLGDPFFQVG 529

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +     G GLGLS+V     LHGG VS+ S+    T +   +P 
Sbjct: 530 GGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575


>gi|158422717|ref|YP_001524009.1| sensor protein [Azorhizobium caulinodans ORS 571]
 gi|158329606|dbj|BAF87091.1| sensor protein [Azorhizobium caulinodans ORS 571]
          Length = 553

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 170/395 (43%), Gaps = 11/395 (2%)

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV--AVFGPDGR----IKL 458
           T  P GG +     ++  +         + +  E +D    GV  A+    GR    + L
Sbjct: 134 TGLPEGGWLLGCGLISAALSA---VAAGLSLAAERLDRSMMGVDLALVTLHGRGGEVLGL 190

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            +         E+  L  G   R +      +           +   S  + R   +G  
Sbjct: 191 EHADAARAHVPEDAWLGQGLFDRVLVPDRPAFLAALSTAAHGLSATESVCEVRLRCEGEG 250

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E      +E   +P    +    + ++                  +A+  K+ F+  +S+
Sbjct: 251 EAPDFVWMELRCVPAGEDRARAHWRDIHAVKIQLEEDHRARTEAERANLAKSRFLAAMSH 310

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGI 637
           ELR+PL  I+GF++LL T     +++++ + Y   I  S   LL +VNDILDL+ V+AG 
Sbjct: 311 ELRTPLNTILGFSELLATDTEQRIDARRKEDYARIIHESGQHLLGVVNDILDLSRVEAGA 370

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            +L++  I +  L++   + +       NI++  +   +L   +AD++ + Q+   +LSN
Sbjct: 371 YELSFEHIDMAHLVDGCVEMVGLDAARRNIKVTTLLPARLPRPMADQRAVRQMTLNLLSN 430

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGL 756
           A+ FS  G  V +  +  NG    SV+++G+ +     + +   F        + RG GL
Sbjct: 431 AVKFSEHGGLVEVNVSAQNGVVSLSVRDSGAGMSPAEVERLGEPFFQAGDAERRARGSGL 490

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL++V + + LH G   ++SS  G TT+   +P +
Sbjct: 491 GLAVVRALVKLHDGAFEVTSSVGGGTTVTISLPVR 525


>gi|114571065|ref|YP_757745.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341527|gb|ABI66807.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 597

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            F+   ++     + +       +I+ L     ++         RA + L +  EA  +A
Sbjct: 152 GFEQAAQARVAGFQRMEWIAFGLTILTLIAEAVLIFRPAANSIERAMKRLKDAREAADRA 211

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K  F+  +S+E+R+PL  ++G    L+ +    L+  Q + V  I +S  +LL++VN
Sbjct: 212 NAAKTDFLAQMSHEIRTPLNGVLGMARGLRDT---PLDEGQVEMVSTICSSGDLLLSVVN 268

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADR 684
           D+LDL+ ++AG ++L    + L  +++    +      E  I I+   D    G +  D 
Sbjct: 269 DVLDLSKIEAGEIELETVDMSLVQIVDWTVSAFRPACVEKRITIESSIDPGAEGWYRGDP 328

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIPEDMCKSVF 739
            R+ QI S ++SNA+ F+  G+  + ++ +   GD        V + G  +P    +++F
Sbjct: 329 TRVRQILSNLVSNAIKFTQIGTVSISVRCSTSPGDGTDRVEICVADTGIGVPAHKLQTIF 388

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPSKE 792
             F        R   G GLGL I      L GG +S+ S     +      R+P  E
Sbjct: 389 QAFSQADSSTTRAYGGTGLGLPICRKLATLMGGEISVRSRPGCGSIFTVALRMPRTE 445


>gi|319654425|ref|ZP_08008512.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
 gi|317393924|gb|EFV74675.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
          Length = 465

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +N F+  +S+ELR+PLT I G+ D++    L      + +Y+  I   +  L +L+ D+
Sbjct: 234 ERNDFLASISHELRTPLTYIKGYADIVHKRNLSI--EDRDKYLNIIHEEANRLSDLIKDL 291

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            DLA +D     +    I L D + +++Q  +    E  + + VI   +    +AD  RL
Sbjct: 292 FDLAKMDKNSFVIQKRPIDLTDFILKIEQKFSPAFQEKEMELDVICPKE-AVIIADPTRL 350

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   +L NA+ +S  G+  IL       D    V++NG  IPE+    + NRF     
Sbjct: 351 EQIIFNLLDNAIKYSPPGAKTILSVNNKKKDVYIKVRDNGKGIPEEDLPYILNRFYRVDK 410

Query: 748 RGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              R   G GLGL+IV+  +  HGG VS+ S +   T      
Sbjct: 411 SRTRSLGGTGLGLAIVKELVLAHGGTVSVRSKEGKGTEFELVF 453


>gi|297161562|gb|ADI11274.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1400

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 119/261 (45%), Gaps = 17/261 (6%)

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             +  R+   L EK   L  A + K+ F+ ++S+ELR+PL +++    LL  +  G L+ +
Sbjct: 908  NELQRSNAELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNPDGRLSEQ 967

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            + Q+   I  S + LL L+NDILDL+ ++AG M +    + +  LL+ V  +      + 
Sbjct: 968  EEQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRAKKLPVVKLLDYVNATFRPLAVDR 1027

Query: 666  NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------ 718
             +  ++     +     +D QRL QI   +LSNA+ F+S G  V L   R  G+      
Sbjct: 1028 GLSFEITVGEDVPREMFSDEQRLQQILRNLLSNALKFTSSGG-VKLHVERAPGEKFSEET 1086

Query: 719  -------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
                     FSV + G  IP +    +F  F  +      +  G GLGLSI      + G
Sbjct: 1087 LRSADAVVAFSVTDTGIGIPPEKLSVIFEAFQQSDGTTSRKYGGTGLGLSISREIAGMLG 1146

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G +   S     +     +PS
Sbjct: 1147 GRIVAESEVNVGSRFTLYVPS 1167


>gi|257093802|ref|YP_003167443.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046326|gb|ACV35514.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 835

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 111/557 (19%), Positives = 213/557 (38%), Gaps = 54/557 (9%)

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDV------SKEITVNDQLTHTYEILHNLTVAIA 320
           S +      +  ++  ++S     +A  +      +   ++        +I+  L  +IA
Sbjct: 156 SPVAEAEAMTLALIAQISSLAVVAMAAKIVVRARAAARESLRQGEKRLQQIVDGLPASIA 215

Query: 321 IFDQNR---YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
             D         F NR F E +    A +A     D L E +           ++    +
Sbjct: 216 YADYTGSVARYSFVNRRFAERFGKAPADIAGRAVVDVLGEEV-----------YRDVAPH 264

Query: 378 IFSVYKSSETHKDTWHLP--NGQTLHVIVTSNPR--------GGTIWMFENLTVQVDLET 427
           +  V +  E  +    LP  +G T +  V   P         G  I+  ++ + +     
Sbjct: 265 LQRVLQ-GEAVEYDRALPTADGTTRYDRVYLVPDWAEDGAVQGAYIFGIDD-SERKRALL 322

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                     E       G   F  +  R+  S+  +R +   E    +P      +AAT
Sbjct: 323 ALEGSEAKLAEAQAMAHVGNWEFDLETDRLTWSDEVYR-ICGHEPRSFTPFFRTDYVAAT 381

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL------PNAQTML 540
                +     +  A ++ +   +R   +       +  +E     L        +    
Sbjct: 382 --PVEDRPKLAEALAQVLATGAAQRLEHRVVRPDGDERTVEVRAQVLCTDLAGRISTLTG 439

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              +V++  + ER L    EA   A + K++F+ ++S+E+R+P+  +IG   + +     
Sbjct: 440 VVQDVSERKQIERELIAAKEAAEAASKAKSAFLANMSHEIRTPMNGVIG---VAELLLTE 496

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L  +   Y E I  S   LL +++D+LDL+ ++AG ++L      L +L+ E+      
Sbjct: 497 ALEERARHYAETIQRSGRALLGVLDDVLDLSKIEAGRLELESVRFDLPELVREMSDLFGE 556

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---N 716
                  R+ V     +  +V  D  RL Q+   ++SNA+ FS++G  + ++   D   +
Sbjct: 557 AARAKGARLVVSVAPAVPRWVEGDLVRLRQVLLNLVSNAVKFSARG-IIEIELRHDGDGD 615

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
           G   F+V++ G  I  D    +F+ F        RR  G GLGLSI    + L G  + +
Sbjct: 616 GALRFAVRDQGLGIAPDKQARIFDAFAQADQGTTRRFGGTGLGLSIARQLVRLMGSDIGL 675

Query: 775 SSSDEGVTTINC--RIP 789
            S+    +      R+P
Sbjct: 676 HSTLGEGSCFWFCLRLP 692


>gi|161616338|ref|YP_001590303.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168243164|ref|ZP_02668096.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262659|ref|ZP_02684632.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|194451313|ref|YP_002047357.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|200387522|ref|ZP_03214134.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|161365702|gb|ABX69470.1| hypothetical protein SPAB_04147 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409617|gb|ACF69836.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|199604620|gb|EDZ03165.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205337795|gb|EDZ24559.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348428|gb|EDZ35059.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 778

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|304410179|ref|ZP_07391798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307302110|ref|ZP_07581868.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304351588|gb|EFM15987.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306914148|gb|EFN44569.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 933

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 186/532 (34%), Gaps = 62/532 (11%)

Query: 275 KSYKIVRVLNSFGE-----AGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQN 325
           + Y++   L   G        IA ++       +               L  +IAIFD N
Sbjct: 39  RFYELEDTLVEQGSNIIEPLSIASEIGLVANDREATKRLLAAAQLNKSTLVKSIAIFDDN 98

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             L   +      +  D   +    + + L        ++    +    +  IFS   S+
Sbjct: 99  NQLFVTSH-----YHKDFEIMRYKEALNTL-----HKTEIEHVGDSLILRTPIFSTGPSA 148

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                     +GQ L          G I +  N         K   L++     +     
Sbjct: 149 APANYDIQTDDGQLL----------GYISIIIN---------KERALLEQHRAAVAAFI- 188

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + + G    +            T     +    I  +    ++         L   +I 
Sbjct: 189 -IVLIGVQLNLLF----------TFRLVKNVTQPITEMVRVVAKIREGKLDARLDGNLIG 237

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             D  ++ +      LS+   E           +   +   +    E  L    +   +A
Sbjct: 238 ELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVE--LDLAKKRALEA 295

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y++ I  S+T LL ++N
Sbjct: 296 SRIKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYIKTIERSATNLLGIIN 352

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG M L      L + + +    I+       + + V     +  +   D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFN 740
            R+ QI + ++ NA+ F+  GS  V ++    + +       V + G  I E     +F 
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F        RR  G GLGL I +  +N  GG +  +SS E  +     +P 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524


>gi|291559470|emb|CBL38270.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 1068

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 167/403 (41%), Gaps = 31/403 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEE 471
           +    ++T    +E+  +  +     +++ L + +  +        L N  +       +
Sbjct: 387 MIFLRDITE-AKVESARHLQMAADNASMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQ 445

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-------LSDS 524
               P     +        Y   +  +    +I   D+ RK L+   ++       + + 
Sbjct: 446 MIYKPLGFYHDFQMQVLEKYKTLEPLEAIDILIAP-DNIRKKLKSENDIYKFEYCSMDEK 504

Query: 525 VLEY-SIIPLPN-----AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQ 574
             +  S IPL        + +L  ++VT   +AE    +AL E   +   A+  K  F+ 
Sbjct: 505 TYKIASYIPLEWKNGKLEKVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLS 564

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+++R+P+  I+G T +           +  + +  I+ SS  LL L+N++LD+A ++
Sbjct: 565 NMSHDIRTPMNAIVGLTAI--AGANIESQDRVIECLSKITESSRHLLGLINEVLDMARIE 622

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSK 693
           +G M L      L+DL++ +       + E+     +  +  +  +   D  R+ Q+F  
Sbjct: 623 SGKMTLAQEDFNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVN 682

Query: 694 ILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           ++SNA+ ++  G  +              G + F++++NG  +  +  K +F+ F     
Sbjct: 683 LMSNAIKYTPDGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADD 742

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R  G GLG++I  + +NL  G + + S+    T I   I
Sbjct: 743 HRTTRVQGTGLGMAISRNIVNLMDGTIKVDSTLHKGTKITVTI 785


>gi|261822787|ref|YP_003260893.1| hybrid sensory histidine kinase BarA [Pectobacterium wasabiae
           WPP163]
 gi|261606800|gb|ACX89286.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae
           WPP163]
          Length = 928

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 12/246 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SLN+ Q+ Y+  I
Sbjct: 275 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLNTTQTDYLLTI 331

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++ND+LD + ++AG + L      L+  L++V   +A   HE  + + +  
Sbjct: 332 ERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSI 391

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
              +   +V D  R+ QI + +L NA+ F+ +G+  + ++  R           + + G 
Sbjct: 392 QNDVPEQYVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGI 451

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 452 GIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF 511

Query: 787 --RIPS 790
              +P 
Sbjct: 512 HITLPL 517


>gi|213025313|ref|ZP_03339760.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 517

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|166367112|ref|YP_001659385.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
 gi|166089485|dbj|BAG04193.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
          Length = 731

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 133/303 (43%), Gaps = 12/303 (3%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE----- 552
           +L+  +I     E++      +     + E+  I +  AQ         D          
Sbjct: 291 ELWGLLIAHQCQEKRQWLPQEKKFLGQIGEHLAIAIYQAQLYSQVQEQKDIFERRVIERT 350

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS---LNSKQSQY 609
           + L +   A   A+  K+ F+ ++S+EL +PLT IIG +  L+     +      KQ  Y
Sbjct: 351 QELQDTLMAAEAANLCKSEFLNNISHELLTPLTCIIGLSSTLQKCSAANNFLPPDKQKHY 410

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   LL L+ND+L+ + V AG   L+     L  L N V + I T+     I +
Sbjct: 411 LKVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEIIKTEAETKEINL 470

Query: 670 KVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +      K   F AD  R+ QI   +L NA+ F+ +   V L+  ++    IF V++ G
Sbjct: 471 ILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAVTLRLWKEGSQVIFQVEDTG 530

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP      +F +F       +RR  GVGLGL++ +  + LH G + + S  +  +   
Sbjct: 531 IGIPAQKIPLLFEKFTQLDGSRKRRYGGVGLGLALTKQLVELHRGTIEVESCLDKGSIFT 590

Query: 786 CRI 788
            R+
Sbjct: 591 VRL 593


>gi|167648426|ref|YP_001686089.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167350856|gb|ABZ73591.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 627

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 133/273 (48%), Gaps = 7/273 (2%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E  +D  +  S+    N       +N  D   A   L +  +    A+ +K+ F+ ++S
Sbjct: 197 VEQAADDDVFQSLTDSFNHLVSRLEINDHDLRGAMAELVKARDDANAANVLKSHFLANMS 256

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  ++  T+++    +G L++ Q + +  I  S  +LL+++ND+LDL+ ++AG 
Sbjct: 257 HEIRTPLNGVLAMTEVMA---MGELSAAQRERLSVIRESGDLLLSVLNDVLDLSKIEAGR 313

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILS 696
           + L      L  L   +++S AT+  + N+     ++   LG +  D  RL QI   ++S
Sbjct: 314 LDLVERDFDLASLALSIRESYATQARQKNLEFGVFVAPEALGPWRGDADRLRQILGNLVS 373

Query: 697 NAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--G 753
           NA+ F+ +GS  V   +A D       V + G  I  +    +F++FV       RR  G
Sbjct: 374 NALKFTLEGSVSVRFASADDGSGLRIDVVDTGIGIAAESLPRLFDKFVQADSSTTRRFGG 433

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            GLGLSI      L GG V + S +   +T   
Sbjct: 434 SGLGLSICNELAALMGGGVHVQSREGQGSTFTV 466


>gi|154245353|ref|YP_001416311.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159438|gb|ABS66654.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 484

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 6/272 (2%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYEL 580
            +E     L +    + +     +  AER              +A+  K+ F+  +S+EL
Sbjct: 185 TVEARCTALRSGLVRIVWRAPWQAAAAERLKADDAARARAEAEEANAAKSHFLAAMSHEL 244

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           R+PL  I+GF++LL T     L+  +++ Y   I  S   LL LVNDILDL+ V+AG  +
Sbjct: 245 RTPLNAILGFSELLATETGAPLDDARKADYARIIHESGQHLLGLVNDILDLSRVEAGAYE 304

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    + +  L+    + +A       + +K +   +L +  ADR+   QI   +LSNA+
Sbjct: 305 LEREGVDVAALVAGCAEMVAIDAGRAGVAVKTVFAPRLPAIDADRRAFKQIVLNLLSNAV 364

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGL 758
            F+ +G  V +    +       V++ G  +  +    +   F       QR RG GLG+
Sbjct: 365 KFTPEGGRVQVSVRSEGEAVAIRVRDTGPGMRPEDVARLGEPFFQAGDCTQRARGSGLGI 424

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++V+  + LHGG   + S+    T++   +P 
Sbjct: 425 AVVKGLVKLHGGDFRVESAPGRGTSVTVTLPL 456


>gi|260897182|ref|ZP_05905678.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus Peru-466]
 gi|308087996|gb|EFO37691.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus Peru-466]
          Length = 718

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 154/377 (40%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   ++   ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEIAQPIVDTDQKVFS-------DNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 313 ---LTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 369

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  + 
Sbjct: 370 ALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEE 429

Query: 717 GDFIF--SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   V++ G  IPE     +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 DFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 490 ITVTSEEGFGSTFTVSI 506



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 73/201 (36%), Gaps = 17/201 (8%)

Query: 121 FHHYIKLSKATEKL-----RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +L+K   KL     R +  +F L  +      ++IE R+    A  R  ++  + 
Sbjct: 81  EESRQRLTKLVSKLKDMRSRDQELNFQLQ-QNIEKLNLEIEERIKAEEA--REEAMQDLE 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT---ETEGIV 232
           +E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ T   E + + 
Sbjct: 138 NEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVG 197

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSF 286
                  S+++ +  +       S  +    E       G    +++ +V          
Sbjct: 198 LSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL 257

Query: 287 GEAGIAIDVSKEITVNDQLTH 307
           G  G   D+++     + L  
Sbjct: 258 GLVGFGRDITERKRHEESLEK 278


>gi|167756094|ref|ZP_02428221.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402]
 gi|167704086|gb|EDS18665.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402]
          Length = 565

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 164/371 (44%), Gaps = 37/371 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D   K  +        +D + EG  +   D  + + N   + L+    + +     I++ 
Sbjct: 227 DTMKKLKSEQIKINGILDQMKEGFVLLDSDLTVLMVNRKAQKLYG---HTIKLNCSIKDF 283

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                          +F   I +  D     Q  +E+  +       +   +    L FV
Sbjct: 284 ---------------IFDFKIINALDHLSDEQQVVEVEKEKEFYNCYVAKVDYGVTLLFV 328

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T+   A +              ++  F  +VS+EL++P+T+I G+++LL+T  +   +
Sbjct: 329 NITEQHNAMK--------------MRQEFFSNVSHELKTPMTSIRGYSELLETGVINDKD 374

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +   + ++ I      +  L+NDIL ++ ++   + +    + L  L++E+  ++  ++ 
Sbjct: 375 AS-KKALDKIHDEVNNMSTLINDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEID 433

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + +++  V  + +  ++ ++ Q + Q+ S +++NA+ ++  G  +I+K+ +   + I  V
Sbjct: 434 KKHLQ--VDKELEDITYTSNHQHMHQLLSNLITNAIKYNVDGGKIIIKSYQFGRNIIIEV 491

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I +     VF RF         +  G GLGL+IV+  +  + G+++++S     
Sbjct: 492 SDTGRGISKIDQGRVFERFFRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEG 551

Query: 782 TTINCRIPSKE 792
           TT    +P +E
Sbjct: 552 TTFKVTLPMEE 562


>gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
 gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 952

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/402 (23%), Positives = 168/402 (41%), Gaps = 27/402 (6%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIK 457
            L V+     R G I  +           +      +    +     G+ +    DG + 
Sbjct: 317 MLWVLAIQFDRKGLIPNY-------RRAQRLLESEVLNRAILRTAPVGLGLLSAHDGSVL 369

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L N A   L         P         T  R  +E     L    I   D     LQ  
Sbjct: 370 LQNNAMLELSARTSGEPLPNRLWDAYRQTTGRSNDEDGALLLHDLAIEREDSNPIYLQAN 429

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +                    + T ++++    +E  L E   A  +A++ K++F+  +S
Sbjct: 430 VVAARYRGANV---------LLCTLLDISMRKESELKLKEARIASDQANKAKSTFLATMS 480

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  IIG  +LL+ S+   L+++QS+ ++ + + S  LL+++NDILDL+ V++G 
Sbjct: 481 HEIRTPLNAIIGNLELLRRSQ---LSNQQSERLQVVESCSNALLHIINDILDLSKVESGQ 537

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKVISDGKLGSFVADRQRLLQIFSKILS 696
           M L      +  LL E+  + A       ++ +  + +G    +  D  R+ QI S ++ 
Sbjct: 538 MTLENIPFDIQALLQEIVDAYAPLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIG 597

Query: 697 NAMDFSSKGST-VIL---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           NA+ F+ +G   V +   KAA+ +      V + G  I  D   ++F+ +        RR
Sbjct: 598 NAIKFTERGHISVDVHQAKAAQGDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRR 657

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             G GLGL + +    + GG + + S  +  TT+   +P +E
Sbjct: 658 FGGSGLGLPLCKRLATIMGGSIEVDSLPDFGTTVTVVLPLRE 699


>gi|299821622|ref|ZP_07053510.1| sensor histidine kinase [Listeria grayi DSM 20601]
 gi|299817287|gb|EFI84523.1| sensor histidine kinase [Listeria grayi DSM 20601]
          Length = 601

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 161/370 (43%), Gaps = 32/370 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++ V  F  +  I LSNP                      +   
Sbjct: 250 ALQQEKEQFSNVLIGMADAVIKFDVEQTIILSNPPAEEFLHHWFFS----------SENE 299

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +R        +L A  +    ++++ + G L  + D      +  L +   + + V V  
Sbjct: 300 TRVLVPPVLSELIAKAV----EQKQEITGEL-TVDDKTYVAILTLLYDGTIIRSIVVVLR 354

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          +++K  F+ +VS+ELR+P++ + G+++ +      +   +  
Sbjct: 355 DMTEERRL----------EKMKTDFLNNVSHELRTPISMLQGYSEAIIDGVAQN-EEEVR 403

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + E I   S  +  LVN++LDLA ++AG   L+     L  L N+V  ++     EN++
Sbjct: 404 AFAEIIYEESLRIGRLVNEMLDLARMEAGFTNLDKKAGSLTALANKVTANLQVLAEENHV 463

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKG--STVILKAARDNGDFIFSVK 724
            + V S      +  D+ R+ Q+F  ++ NA+  +  +G    V ++  +       +++
Sbjct: 464 SLAVSSAPADIPYFFDQDRMEQVFINLIMNAIQHTGREGHEGKVAVQLEKLEDRIKIAIQ 523

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +NG+ I E     +F RF        RG+ +G G+GL+IV++ ++ HGG++ + S     
Sbjct: 524 DNGAGISEADIPYLFERFYKADKARIRGETKGTGIGLAIVKNIVDAHGGYIKVESVLGKG 583

Query: 782 TTINCRIPSK 791
           ++   ++P +
Sbjct: 584 SSFIIQLPLQ 593


>gi|120601868|ref|YP_966268.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562097|gb|ABM27841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1001

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 110/716 (15%), Positives = 225/716 (31%), Gaps = 108/716 (15%)

Query: 170 SLDGIYSELAETTLKCKKLS--------NHISVFKVLFDSLDFLV--------WHRD-QA 212
            +  +   +A    + + L                 L   +            +  D Q 
Sbjct: 10  EVQALRERIARLEDENRLLRLCARFEGPAPGEALGSLLPEIIAPASDAPLVYAYVSDMQT 69

Query: 213 GDILWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            ++L+ N S        +G    + +             R+  +      +      L  
Sbjct: 70  HELLFVNRSLTMAVGAWQGRKCYELLQGRDTPCPFCTSGRLQRNPERPVVWEWRNPRL-- 127

Query: 272 GNNKSYKIVRVLNSFGEA-----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD-QN 325
              + ++ +     + +       +A+D++      + L      L     AI + D + 
Sbjct: 128 --GRWFRCIDRCIHWPDGRPVRYELAVDITDMREAQEDLLRFRAALDASAEAIFLVDLEE 185

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
                 N     +   D   L                 +   Q+        +    ++ 
Sbjct: 186 GRFLDVNSGACTMLGYDRDTLLGLGLCGIRRSMAADGCR---QILDSIAAGAVLENVETV 242

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV----QVDLETKY----------NT 431
             H+D   +P      ++  +      I +  +++     +  +E +Y            
Sbjct: 243 YLHRDGTFVPVEVGARLVDRAGGPRLAIMVARDVSEKRKARRAMEVRYLYEHVLSSCARE 302

Query: 432 LVKVQGE------TIDHLSEGVAVF---------GPDGRIKLSNPAFRSLWKTEENRLSP 476
           L+            +  L +G               +GR+   +  + S        L  
Sbjct: 303 LLSRSCSESTLVGVLGALRQGAGACRAYIFENYEDAEGRL-CCSQRYESSAPGVRPELDN 361

Query: 477 GTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQG-------TLELLSDSVLE 527
                 I A+ +    +    G  +   +      ER  LQ         L + +  V  
Sbjct: 362 PALQNIIYASEAPNWLHELRKGRAVVGPVADQPLPERDVLQAQGIRSLLVLPIFARGVW- 420

Query: 528 YSIIPLPNAQTMLTFVNVT---------------DSVRAERALTEKNEALRKADEIKNSF 572
              +   + +T  T+                   +  RAE  L   ++   +A   K+ F
Sbjct: 421 CGFVGFDDTRTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVF 480

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  IIG T+L   +    ++    + +  +  S+  LL +VND+LDL+ 
Sbjct: 481 LANMSHEIRTPLNAIIGLTEL---TLQEPISQGVGENLRGVLHSAEALLAVVNDLLDLSR 537

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIF 691
           V++G + L       + L   V + +        +  ++ I+     +   D  RL Q+ 
Sbjct: 538 VESGRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVL 597

Query: 692 SKILSNAMDFSSKGS---TVILKAARDNGD-------------FIFSVKNNGSSIPEDMC 735
             ++ NA+ F+ +G    TV       +                 F+V + G  IP D  
Sbjct: 598 LNLVGNALKFTDEGGVSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQ 657

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F  FV       RR  G GLGL+I    + + GG + + S     +   C +P
Sbjct: 658 ACIFESFVQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVP 713



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 83/299 (27%), Gaps = 58/299 (19%)

Query: 53  KKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETP---EIIGQLHQRIDIPQTD 109
           K      + +  + +++++       +    +    + E P   E +G L   I  P +D
Sbjct: 2   KDEAAGSAEVQALRERIARLE-----DENRLLRLCARFEGPAPGEALGSLLPEIIAPASD 56

Query: 110 TDL---------------------LSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQ 148
             L                     ++   W     Y  L       R     F      Q
Sbjct: 57  APLVYAYVSDMQTHELLFVNRSLTMAVGAWQGRKCYELLQG-----RDTPCPFCTSGRLQ 111

Query: 149 ND--CAIKIEGRVSGSCAFLR-----ILSLDG--IYSELAETTLKCKKLSNHISVFKVLF 199
            +    +  E R      + R     I   DG  +  ELA      ++    +  F+   
Sbjct: 112 RNPERPVVWEWRNPRLGRWFRCIDRCIHWPDGRPVRYELAVDITDMREAQEDLLRFRAAL 171

Query: 200 DSLDFLVWHRD-QAGDILWANISYKKNTETE----------GIVFQKAIGESRKLFKEEI 248
           D+    ++  D + G  L  N         +          GI    A    R++     
Sbjct: 172 DASAEAIFLVDLEEGRFLDVNSGACTMLGYDRDTLLGLGLCGIRRSMAADGCRQILDSIA 231

Query: 249 KKRMISSSALEKNFCE-TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
              ++ +        + T   +E G      + R         +A DVS++      + 
Sbjct: 232 AGAVLENVETVYLHRDGTFVPVEVGARL---VDRAGGPRLAIMVARDVSEKRKARRAME 287


>gi|37520808|ref|NP_924185.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35211803|dbj|BAC89180.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 713

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 218/644 (33%), Gaps = 92/644 (14%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-- 224
           R  +       L                +++L +++  LVW     G   + +  +    
Sbjct: 135 RKRAQHEREQLLERRRQALATAEQSEERYRLLIEAIPQLVWTTTADGRCDYLSQQWVHYT 194

Query: 225 ---NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV- 280
                E  G+ +  A+    +          ++  A+        +    G+ + +K   
Sbjct: 195 GIPEAEQLGMGWLAAVHPEDRPRASACWLAAVADRAIYDLEYRLRAA--DGSYRWFKTRG 252

Query: 281 RVLNSFG-----EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
           R +   G       G   D+  + T  ++                       L  H + +
Sbjct: 253 RPVRDAGGRIVRWFGTCTDMQDQKTAQEERE--------------------RLIAHQQQY 292

Query: 336 V-ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              L ++  A LA N                              SV +  E        
Sbjct: 293 AARLKKLSEASLAIN---------------------------LALSVEEVVEVITFQASA 325

Query: 395 PNGQTLHVI-VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
             G    V  +T +   G       L+ +      +                G A++   
Sbjct: 326 IIGTHQAVTSMTIDADWGRAINAVYLSEKYAAWRDFRGR-----------PNGAAIYA-- 372

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R+  +N   R      + +L    H R      + +        L A ++         
Sbjct: 373 -RVCDTNRPMR----LNQAQLDAHPHWRTFGNADTEHPPLRGW--LAAPLVARDGRNIGL 425

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA----DEIK 569
           +Q + +   +   E   I +  AQ     +       AE+      E  R+     +  K
Sbjct: 426 IQLSDKCEEEFTAEDEAIVVQLAQMASVAIENARLFEAEQTARALAEQARREAEAANRAK 485

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  +S+ELR+PL  IIGF  LL+      L++   + +E I  +  +   L++D+LD
Sbjct: 486 DEFLAVLSHELRTPLNPIIGFAQLLRRK--SGLSAADYRALETIERNGRLQAQLIDDVLD 543

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ + +G M++    + L  ++    +++ +      I +    D    +  AD  R+ Q
Sbjct: 544 VSRIISGKMRVELRAVDLLPVVAAAIEAVRSPAELKGICLSGRLDDGATAV-ADPTRMQQ 602

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +   +L+NA+ F+ +G  V++   R +   +  V ++G  I  D    VF RF       
Sbjct: 603 VVWNLLTNAIKFTPEGGRVVIDLCRGDRTLLIRVSDSGIGISPDFLPYVFERFRQADGTS 662

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            R+  G+GLGL+IV   + LHGG VS  S      TT    +P 
Sbjct: 663 TRKHSGLGLGLAIVRHIVELHGGAVSAQSDGVGQGTTFCVELPL 706


>gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 951

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/420 (21%), Positives = 174/420 (41%), Gaps = 35/420 (8%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIV-TSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
               +Y+   T +    + + + L   + +  P G     F+  + QV     Y T+++ 
Sbjct: 114 RQLRLYEGDRTFRYLVPVFSPEDLRTALPSPRPLGWVELEFDYASTQV---GHYQTILRN 170

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               +      VA+F   G     N   R + +  ++ +     IR           E+ 
Sbjct: 171 LSLLL------VALFIISGIAFYLN---REITRPVQSMIKTVVDIRE--GNLESRVPETS 219

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +L   +    +    +++     + +SV + ++      +T+       D  R E   
Sbjct: 220 KGEL-RELEEGINAMAMTIKDAYNDMQNSVEQATLDLRETLETIEIQNIELDMARRE--- 275

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                  ++A+++K  F+ ++S+E+R+PL  IIGF  LL  S   +L  KQ  Y+  I +
Sbjct: 276 ------AQQANQVKTEFLANMSHEIRTPLNGIIGFARLLARS---NLTKKQEDYISTIMS 326

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISD 674
           SS +LL ++ND+LD   ++AG + L+  +  L + + EV   +       N+ +  +   
Sbjct: 327 SSQVLLTIINDVLDFCKIEAGKLMLDNRSTNLRESIEEVLTMLDPASSAKNLEVVSLFFA 386

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSI 730
                 V D  RL Q+ + ++SNA+ F+++GS VI                SV + G  +
Sbjct: 387 DVPEQLVFDPLRLKQVLTNLISNAIKFTNEGSVVIRTMIEQQQGNKVTVRVSVTDTGIGL 446

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +   K++F  F        R   G GLGL I +  +   GG + + S  +  +T    I
Sbjct: 447 SKTQQKALFQAFAQADSSTAREFGGTGLGLVISKRLVEQMGGDIGLESKKDEGSTFWFNI 506


>gi|256828766|ref|YP_003157494.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577942|gb|ACU89078.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 737

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 10/241 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +    A  +K+ F+ + S+E+R+P+  IIG TD++  +K   +  +Q + +  +
Sbjct: 53  ELDRAKQQAESASRMKSQFLANFSHEIRTPMNAIIGMTDVVLNTK---VTPEQHRALTIV 109

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S  LLNL+N +LDL+ ++AG   L      L   +     ++     E  + +    
Sbjct: 110 KNASESLLNLINGVLDLSKIEAGQFALEVRPFDLRAEVERTVSTLGLTAAEKGLELICRL 169

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +      D  RL Q+   +L NA+ F+  G             D+    F +++ G 
Sbjct: 170 PPDMPRHMQGDPIRLRQVLMNLLGNALKFTPSGHVCCSCQVEPKAGDDCVVRFRIEDTGI 229

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D   ++F  F        R   G GLGLSI    + L GG + + S+    +    
Sbjct: 230 GIPADKLGTIFEDFTQVDSSSTRVYGGTGLGLSISRKLVQLMGGDIFVQSTPGQGSAFEF 289

Query: 787 R 787
            
Sbjct: 290 H 290


>gi|218550493|ref|YP_002384284.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ATCC 35469]
 gi|218358034|emb|CAQ90680.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia fergusonii ATCC 35469]
 gi|324115186|gb|EGC09150.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325498791|gb|EGC96650.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ECD227]
          Length = 778

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                A   +    E+D       +  S++   +   G       +  E   +P  +   
Sbjct: 200 PQDVYAPDVAEKVIETDEKVFRHNVSLSYEQWLQYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KHYQDALEQASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     L +++   
Sbjct: 312 --DLNAEQEKYLKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPIDFTGFLADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL Q+   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 GLQAQQKGLRFVMEPTLPLPHQVITDGTRLRQVLWNLISNAVKFTQQG-KVEVRVRYDKG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           +   F V ++G  IP++    +F  +         +   G G+GL++        GG +S
Sbjct: 429 EMLHFEVADSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLARDMGGDIS 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +     
Sbjct: 489 VSSVPGQGSVFTLT 502



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 71/198 (35%), Gaps = 20/198 (10%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS-LDGIYSELAETT 182
             +L +  E++R+      L  + +++ A   +       A   +    + +  E+ E  
Sbjct: 87  LSRLVQKLEEMRER--DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFEQLKIEIKERE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
               +L    S  +   D+   LV++R++  +    N + +  T       Q    + + 
Sbjct: 145 ETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKS--EKQLVHLKPQD 202

Query: 243 LFKEEIKKRMISSSALEKNFCETVS-------TLEHGNNKSYKIV------RVLNSFGEA 289
           ++  ++ +++I +   EK F   VS           G    ++I       RV    G  
Sbjct: 203 VYAPDVAEKVIETD--EKVFRHNVSLSYEQWLQYPDGRKACFEIRKVPYYDRVGKRHGLM 260

Query: 290 GIAIDVSKEITVNDQLTH 307
           G   D+++     D L  
Sbjct: 261 GFGRDITERKHYQDALEQ 278


>gi|197117203|ref|YP_002137630.1| Hpt domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086563|gb|ACH37834.1| sensor histidine kinase response regulator, Hpt domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 724

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 124/261 (47%), Gaps = 12/261 (4%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +   +   +   A+R   L E       A   K+ F+ ++S+E+R+P+  +IG   LL
Sbjct: 182 DMLQEHMQNLEMKVAQRTTELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLAKLL 241

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    L+  Q  Y+E +S  +  LL ++N+ILD++ V+AG++ L      L   L+  
Sbjct: 242 MET---PLDKVQQGYMESLSDCAENLLTIINEILDVSKVEAGMITLEAIVFDLRRFLDRS 298

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q    +  E  +R+++ +   L   V  D  RL QI   +L NA+ F+ KGS  +  A 
Sbjct: 299 LQPFVLRGQEKGVRVRLEAYPGLPELVLGDPVRLRQILGNLLGNALKFTQKGSITLTAAL 358

Query: 714 RDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
             +G+      FSV + G  I  +  + +F +F        R   G GLGLSI +S + L
Sbjct: 359 TGSGENGVGLKFSVADTGIGIAPEAIEVIFEKFSQADSSTTRLYGGTGLGLSISKSLVEL 418

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG +S+ S+    +  +  I
Sbjct: 419 MGGELSVQSALGKGSVFSFCI 439


>gi|327405881|ref|YP_004346719.1| multi-sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327321389|gb|AEA45881.1| multi-sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 1089

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 108/470 (22%), Positives = 190/470 (40%), Gaps = 52/470 (11%)

Query: 358 FLRSANKLPEQLNWKTWKE--NIFSVYKSSETHKDTWHLPNGQTLH-------VIVTSNP 408
            LR   K  E  N +  KE   +  +Y  ++ +++   L   + L        V++ +  
Sbjct: 350 RLRYNLKFEENSNDENAKELIRLQFLYDLNKKNEEIAILNRNKLLQSDNNENQVVIRNLL 409

Query: 409 RGGTIWM----------FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            G    +          +++      L    N  ++       + + G+ +    G I  
Sbjct: 410 IGSIALLIALLIFIYVRYKDRVSSNQLILSKNKELERLSIVASNTNNGITITNAHGIISW 469

Query: 459 SNPAFRSLWKTE---ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            N  F  L+      E   S GT I N +                ++ I    DE++S+ 
Sbjct: 470 INEGFVRLYGWNSSEEFLESKGTSIYNASGLTR---------AELSSFIEKAVDEKESII 520

Query: 516 ----GTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKAD 566
                 L+      ++ S+ P+ + Q      +    ++TD + A      +      A 
Sbjct: 521 FQSFKELKNQEQKYIQTSLTPVFDEQDELKFLVYVDTDITDLLEARELAIREKRKAENAL 580

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + +  F+ +VS+E+R+P+  IIG T  L   K   L+  Q + ++ + +S+  LL++VND
Sbjct: 581 KTQELFLANVSHEIRTPMNGIIGLTRQLNDEK---LSHSQQEILDTLDSSANGLLHVVND 637

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
           +LD++ + AG M   Y    L DLLN    SI+ +  E  +R  +    KL    + D  
Sbjct: 638 LLDVSKIRAGKMTFEYVRFSLRDLLNTFATSISYRSEEKKLRFNLEFTEKLPNYIIGDPI 697

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI   I+ NA+ F+ +GS + LK              F +K+ G  IP      VF 
Sbjct: 698 RLNQILLNIVGNAIKFTIEGS-ITLKVYSIEQKNGMERIHFEIKDTGIGIPTHKQDFVFE 756

Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F+   +       G GLGL I +S +   GG + + S +   TT+   +
Sbjct: 757 NFMQIEDHRTRTTSGTGLGLGIAKSLVEALGGEIHLFSQEGNGTTVVFEL 806


>gi|295094558|emb|CBK83649.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 526

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 117/249 (46%), Gaps = 4/249 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +     R + E  + L +++E + SF+ ++S++ RSPLT+I G+ + +    +     K
Sbjct: 242 NEFGELARYMEEMADELSRSNEYRKSFISNISHDFRSPLTSIKGYIEAMLDGTIPL--EK 299

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y+  +   +  L  L   +L+L   D+  ++L+ S   + D++     +   +  + 
Sbjct: 300 HEKYLGIVLNEAQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTINTFEKRCKDR 359

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            I +  +         ADR ++ Q+   ++ NA+ F+ +G  + ++    +     SVK+
Sbjct: 360 GIFLDSVFLTDNTVVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVTEKDNKIYTSVKD 419

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D  K VF RF          + G GLGL+I +  I  HG  ++++S +   + 
Sbjct: 420 EGVGIPKDAQKKVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITLTSEEGEGSE 479

Query: 784 INCRIPSKE 792
               +P ++
Sbjct: 480 FIFSLPKEK 488


>gi|300088403|ref|YP_003758925.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528136|gb|ADJ26604.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 443

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 143/364 (39%), Gaps = 26/364 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                        + H+ + + +   +  I   N A   ++  ++         +    T
Sbjct: 106 KTLTAERNRMDLVLAHVGDAIFMVDKNTEITHLNDAAVRMFHLDK---------KEKGQT 156

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   +  ++    + +   + K ++        SV   ++ P+ N    +  V   
Sbjct: 157 FMSAVRNHEMEEMIRKCVATGRRQEKEIESRPGRRQYSV---TVTPIHNESGAVIVV--- 210

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                 R LT     L++ + ++  FV ++S+ELR+P+ ++    + LK   +       
Sbjct: 211 ------RDLTN----LKRLETVRRDFVANISHELRTPIASLKLLAETLKEGAMAD-QEVA 259

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + ++  IS  +  +  LV+++ +L+ +++G   L+   +    ++  V   +  +     
Sbjct: 260 ADFLNRISVEADKMGQLVDELGELSRIESGAAPLDKRPMDAGAVMTTVVGRLQNQADRAK 319

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + ++V +   L +  AD  R+ Q+   +  NA+ F+  G  + L A          V + 
Sbjct: 320 LTLEVATVDGLPAVRADAGRIEQVLMNLTHNAIKFTPAGGRITLTAGISEKGIEIKVTDT 379

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G+ I  D    +F RF          G GLGL+I +  ++ HGG +   SS    TTI+ 
Sbjct: 380 GAGITADDLPRIFERFYKADKARSGGGTGLGLAIAKHIVHAHGGEIRAESSPGQGTTISF 439

Query: 787 RIPS 790
            +P 
Sbjct: 440 TLPK 443



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 21/187 (11%)

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ 304
            +E +  +           E V  +  G      +  + ++F E    +   +  T+  +
Sbjct: 58  DDEAEIELALKRLGGGEAPEKVRLVAIGE-----LADIKHAFNEMARKVG-GRLKTLTAE 111

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                 +L ++  AI + D+N  +   N + V ++ +D           +        ++
Sbjct: 112 RNRMDLVLAHVGDAIFMVDKNTEITHLNDAAVRMFHLD------KKEKGQTFMSAVRNHE 165

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-NPRGGTIWMFENLTVQV 423
           + E +           V       K+    P  +   V VT  +   G + +  +LT   
Sbjct: 166 MEEMI--------RKCVATGRRQEKEIESRPGRRQYSVTVTPIHNESGAVIVVRDLTNLK 217

Query: 424 DLETKYN 430
            LET   
Sbjct: 218 RLETVRR 224


>gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1385

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 118/242 (48%), Gaps = 4/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+  A   + E L + D  K +F  ++S+E R+PLT I+G  + L+T   G+ +++  + 
Sbjct: 335 RSYEAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRTQLAGA-DARVREE 393

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +   L  LVN +LD + ++AG M+  Y  + L+ +  ++     + + +  +  
Sbjct: 394 LEIIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQVTADLASVFRSAVDKAGLDF 453

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++           DR    ++   +LSNA+ F+  GS + +     +   + +V + G  
Sbjct: 454 RIDCPPLQEQVYVDRGMWEKVILNLLSNALKFTFDGS-IGVTVRARDEHAVITVTDTGIG 512

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  +    +F RF    NA      G G+GL++V+  + LHGG ++  S++   T    R
Sbjct: 513 VSREEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGEGTRFTIR 572

Query: 788 IP 789
           +P
Sbjct: 573 LP 574


>gi|317122483|ref|YP_004102486.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592463|gb|ADU51759.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
          Length = 550

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 109/240 (45%), Gaps = 6/240 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                +R+ ++I+  FV +VS+ELR+P+  I GF + L    +    +    + + I   
Sbjct: 288 HDITEIRRLEQIRRDFVANVSHELRTPVAAIQGFAETLLEGVIREDPATAEHFAQVIHRE 347

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  +  LV D+LDLA +++    L      L D   +  +    ++    +R++V S  +
Sbjct: 348 AERMARLVQDLLDLARLESPEPGLQRERFDLRDSAAQAAERFRPRLEAAGLRLEVESPPE 407

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIPE 732
                ADR RL Q+++ +L NA  ++  G TV +   RD        +  V++ G  IP 
Sbjct: 408 PVPVWADRHRLDQVWTNLLENARQYTPAGGTVTVAVRRDGTGRKARAVGEVRDTGRGIPP 467

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D    +F RF            G GLGL+IV+  I  HGG V   S     T I  RIP 
Sbjct: 468 DALPRIFERFYRVDPGRSRASGGTGLGLAIVKHIIEAHGGAVEAESELGAGTVIRFRIPL 527



 Score = 40.7 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM--FENLTVQVDLE-TKYN 430
           W           E  +    L  G+    +    P    +    F  +  ++     +  
Sbjct: 63  WMTAARVTRPVGELIRGARRLAAGEFDRRVHVDGPDELVMLARAFNEMAGRLQATLRELR 122

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
                    +  ++ GV     DGR++L+NPA R L    E  L    
Sbjct: 123 AEQARLATVVGAMTSGVLFIDGDGRLRLANPAARRLLDITEQALGRDY 170


>gi|254788089|ref|YP_003075518.1| integral membrane sensor hybrid histidine kinase [Teredinibacter
           turnerae T7901]
 gi|237686348|gb|ACR13612.1| integral membrane sensor hybrid histidine kinase [Teredinibacter
           turnerae T7901]
          Length = 1140

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 124/254 (48%), Gaps = 6/254 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    +T     +R L +  E    A+  K+ ++  +S+ELRSPL +I+G+  LL+ 
Sbjct: 643 QNRLLQEEITAHEETDRKLQQAKEKAEAANSAKSRYLTGISHELRSPLNSILGYAQLLEH 702

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   ++  +   +  I  S   L +L+  +LD++ +++G + ++   + ++ LL+++  
Sbjct: 703 DE--EISENKRYQLSVIRNSGEHLSDLIEGLLDISKIESGRLDIHRDQVRISALLDQLVY 760

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  E  +R +      L  +V  D +RL QI   +LSNA+ F+ +G  V       
Sbjct: 761 MFRLQAEEKGLRFEYQCHSVLAEYVTTDEKRLRQILINLLSNAVKFTERGG-VSFSVRYR 819

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +    FS+K+ G  IPED  + +F  F  V      Q  G GLGL+I    +++ GG + 
Sbjct: 820 SQVAEFSIKDTGVGIPEDELERIFRPFERVRTPGSPQVSGTGLGLTITRLLVDIMGGDLE 879

Query: 774 ISSSDEGVTTINCR 787
           + ++ EG  T    
Sbjct: 880 VVNNPEGGCTFTVW 893


>gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
 gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
          Length = 1128

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALR 563
           TSF+  RK   G L       L +  +     + + T     + + +  + + ++NE L+
Sbjct: 401 TSFNTVRKDEIGRL------ALSFERMQRSIREKIQTIKKQNEELESNIQIIQKQNEELQ 454

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ I  S   L NL
Sbjct: 455 LADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIIIKSGQRLANL 514

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V+D+LD   +  G M +  S + L      V +  +  +    IRI       L +  AD
Sbjct: 515 VDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVPADLKAVSAD 574

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F   +
Sbjct: 575 PQRLEQVLYNLIGNAIKYTSEG-KIVISANVVDDHVRVQVVDTGQGIPAEQLEHIFEPLI 633

Query: 744 SN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                    R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 634 QAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 682


>gi|2463029|emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum]
          Length = 928

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 12/246 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SLN+ Q+ Y+  I
Sbjct: 275 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLNTTQTDYLLTI 331

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++ND+LD + ++AG + L      L+  L++V   +A   HE  + + +  
Sbjct: 332 ERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSI 391

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
              +   +V D  R+ QI + +L NA+ F+ +G+  + ++  R           + + G 
Sbjct: 392 QNDVPEQYVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTGI 451

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 452 GIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF 511

Query: 787 --RIPS 790
              +P 
Sbjct: 512 HITLPL 517


>gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 1155

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 165/366 (45%), Gaps = 21/366 (5%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ +          G + +S  + R   + +E           +     
Sbjct: 365 LRPLQERDEELLERVG---------GNLGMSIESARYRQRLQEVLAETQQLNEELQVQQE 415

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + ++       ++ Q  LE  ++ + E         +T        + 
Sbjct: 416 ELKTANEELEEQSRVLKESQAHLETQQAELEQTNEQLSE---------RTDALDRKNDEL 466

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q +
Sbjct: 467 SQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSEEQVK 526

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD+A V+AG +++   T  +  L+  ++           + 
Sbjct: 527 FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLA 586

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +V  + ++  +   DRQRL QI   +LSNA+ F+ +G   +  + +     +F+V++ G
Sbjct: 587 FEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERGQVSMNVSFQAGSGIVFAVRDTG 646

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  +++F  F        RR  G GLGLSI     +L GG +++ SS    +  +
Sbjct: 647 IGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVESSPGQGSVFS 706

Query: 786 CRIPSK 791
             +P +
Sbjct: 707 LILPER 712


>gi|317485574|ref|ZP_07944451.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923254|gb|EFV44463.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 1176

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 30/304 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +  +D   K L+ +  +L  S +E                   D       L    EA  
Sbjct: 348 LAKYDRAEKELRESRAMLEQSNVEL---------EHRVSERTRDLQAINAELQLAKEAAD 398

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            A   K+ F+ ++S+E+R+PL  I+ F +L    +         +Y+  I  SS  LL +
Sbjct: 399 AATTAKSQFLANISHEIRTPLHGIMAFAELALLKEKTPP----HRYLRAILQSSRALLEI 454

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVA 682
           +ND+LD++ ++AG ++L  +  +L+D+++ V        H   I + V  D  +  + + 
Sbjct: 455 INDLLDVSKIEAGHLELEQAPFMLDDVVHHVCTVALHNAHAGGIELVVDMDPNMQIALIG 514

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------------FIFSVKNNGS 728
           D  RL QI   +++NA+ F+  G  + +   + + +               I  V++ G 
Sbjct: 515 DAGRLQQIIMNLVTNAVKFTGPGGQICVTLKQGHAEPLPSDTCPEQRRVQIICFVRDTGV 574

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +    +F  F        RR  G GLGL I    + +  G + + S     +T   
Sbjct: 575 GIAPEFLGQLFQPFRQVDASTTRRHGGTGLGLCICRQLVEMMHGEIWVESEPNVGSTFAF 634

Query: 787 RIPS 790
            IP 
Sbjct: 635 SIPL 638


>gi|308126034|ref|ZP_05778782.2| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|308114726|gb|EFO52266.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 780

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 154/377 (40%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 141 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 198

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   ++   ++D            D++  + +  LE         E   +P  +   
Sbjct: 199 DVYSKEIAQPIVDTDQKVFS-------DNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 251

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+
Sbjct: 252 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ 309

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 310 ---LTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 366

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  + 
Sbjct: 367 ALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEE 426

Query: 717 GDFIF--SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   V++ G  IPE     +F  +             G G+GL++ +  IN+  G 
Sbjct: 427 DFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 486

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 487 ITVTSEEGFGSTFTVSI 503



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 73/201 (36%), Gaps = 17/201 (8%)

Query: 121 FHHYIKLSKATEKL-----RKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +L+K   KL     R +  +F L  +      ++IE R+    A  R  ++  + 
Sbjct: 78  EESRQRLTKLVSKLKDMRSRDQELNFQLQ-QNIEKLNLEIEERIKAEEA--REEAMQDLE 134

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT---ETEGIV 232
           +E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ T   E + + 
Sbjct: 135 NEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVG 194

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSF 286
                  S+++ +  +       S  +    E       G    +++ +V          
Sbjct: 195 LSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHYFELRKVPFYSKDGRHL 254

Query: 287 GEAGIAIDVSKEITVNDQLTH 307
           G  G   D+++     + L  
Sbjct: 255 GLVGFGRDITERKRHEESLEK 275


>gi|254486348|ref|ZP_05099553.1| hypothetical protein RGAI101_1005 [Roseobacter sp. GAI101]
 gi|214043217|gb|EEB83855.1| hypothetical protein RGAI101_1005 [Roseobacter sp. GAI101]
          Length = 654

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/403 (23%), Positives = 170/403 (42%), Gaps = 38/403 (9%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L     L  K      +  E +  + EG   F    R+ + N  + +      +R+ PG 
Sbjct: 251 LLAYRRLAKKKENSHALLAEAVGCIDEGFIAFDDRERLMIVNDKYLAYHSEIADRIVPGM 310

Query: 479 HIRNIAATCSRYYNESDGWD-LFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNA 536
            +  +      + N  +  +   A I       R   +  L  +  D  L+ +    P+ 
Sbjct: 311 TMEEMLRLSRSHQNGPEELEKREAWIAERLRCFRNPGEPFLHSIGDDFWLKVTEAKTPHG 370

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T+  + +V+   RA++A          AD  K  F+ +VS+ELR+PLT I G    +K 
Sbjct: 371 YTVGVWTDVSAEKRAQQA-------AETADWEKTEFLNNVSHELRTPLTVIFGRATFIKN 423

Query: 597 ------------------SKLGSLNS---KQSQYVEYI----SASSTILLNLVNDILDLA 631
                             +  G L        ++V       + S+  ++ LV+D+LD  
Sbjct: 424 CEKLPQFKRIQAALDAEGNNSGDLTDAINDSRKFVSEQGVGIAESAKHMIRLVDDLLDWT 483

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            V  G ++L+ ST+ ++++   V Q + +   +  + +    +G +    AD+ RL QI 
Sbjct: 484 KVARGTLELDVSTLRVDEVAETVVQDLQSDAAKKGLSLSYSGEG-IVEAQADKIRLRQIL 542

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
              ++NA+ F+  GS + L   ++ G  +FSV + G  I E+  + VF RF         
Sbjct: 543 YNFVNNAIKFTDAGS-ICLSVRKEVGKVVFSVTDTGRGISEENREKVFQRFHQVDGSMIR 601

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              G+GLGL+I +    LH G++++ S+    +T +  +P  E
Sbjct: 602 DNGGLGLGLAISKQLAELHDGYLTLESTLGQGSTFSLILPRAE 644



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 80/232 (34%), Gaps = 14/232 (6%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            +      E +  +      FD    L   N  ++         +    + +E+L   RS
Sbjct: 262 ENSHALLAEAVGCIDEGFIAFDDRERLMIVNDKYLAYHSEIADRIVPGMTMEEMLRLSRS 321

Query: 362 ANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
               PE+L   + W       +++         + +   L V     P G T+ ++ +++
Sbjct: 322 HQNGPEELEKREAWIAERLRCFRNPG-EPFLHSIGDDFWLKVTEAKTPHGYTVGVWTDVS 380

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGV-----AVFGPDGRIKLSN--PAFRSLWKTEENR 473
            +   +    T    + E ++++S  +      +FG    IK     P F+ +    +  
Sbjct: 381 AEKRAQQAAETADWEKTEFLNNVSHELRTPLTVIFGRATFIKNCEKLPQFKRIQAALDAE 440

Query: 474 LSPGTHIRNIAATCSRYYNE-----SDGWDLFAAIITSFDDERKSLQGTLEL 520
            +    + +      ++ +E     ++       ++    D  K  +GTLEL
Sbjct: 441 GNNSGDLTDAINDSRKFVSEQGVGIAESAKHMIRLVDDLLDWTKVARGTLEL 492


>gi|150389322|ref|YP_001319371.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149949184|gb|ABR47712.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 518

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 138/322 (42%), Gaps = 25/322 (7%)

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                   +  +     ++ N +   DLFAA+I +           LE ++       + 
Sbjct: 219 FWFCIWILLLLMIKWYLKHRNIAKYIDLFAAVIRA-----------LESIAKGNFNVRL- 266

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                     F       R  +++      L + ++++  F+ +VS+E++SPL +I GF 
Sbjct: 267 -------DDKFKKDESFSRLVKSVNMMASGLDQMEKMRQEFISNVSHEIQSPLASIQGFA 319

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+  +L     ++  Y+  I   S  L  L + +L LA +++  M+       L+  L
Sbjct: 320 QLLQNDELSP--EERKHYLSIIETESKRLSKLSDSLLKLAILESDSMRFEPKAYRLDKQL 377

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             +  +   +  E  I ++   D    +  AD   + Q++  ++ N++ F+ +G +V + 
Sbjct: 378 RNLILACEPQWREKRINMEAFLDE--VTITADEDMMSQVWINLIYNSIKFTPEGGSVRVD 435

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
             +     +  + + G  IPE+  K +F RF       +R  +G GLGLSI +  I++H 
Sbjct: 436 LNQHGKTIVCKISDTGIGIPEEDQKHIFERFYKADKSRERSKKGGGLGLSITKKIIDMHY 495

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +S+ S     TT    +P +
Sbjct: 496 GDISVQSKSGTGTTFTVSLPIQ 517


>gi|319646280|ref|ZP_08000510.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|317392030|gb|EFV72827.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 736

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 121/767 (15%), Positives = 280/767 (36%), Gaps = 62/767 (8%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD---GKDETPEIIGQLHQ 101
           + +  +L  ++N      +++   L +Y  L         + D      +  +   ++ Q
Sbjct: 7   LNESLNLQNQLNRLKKENAKLKADLYQYELLFNGTLDAIFILDKQMNIIKANDAACKILQ 66

Query: 102 RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF-DLVAETQNDCAIKIEGRVS 160
                  +   L F   L      +L++   +  + G +  ++     N     IE   S
Sbjct: 67  SQKKNLLNRSALDF---LHAVPPDELNQNIHRFLERGYAKKEVAIRLDNGSVKYIEFTAS 123

Query: 161 GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
                        +  +++   +  ++ + +  +FK LF      +   D+ G  + AN 
Sbjct: 124 KGIGEDCFFV---VMRDISSKKILERERTINEKLFKDLFHRAVEGIVIFDKQGCFIDANH 180

Query: 221 SYKKNTETEGIVFQKA-----IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
           S+ ++ E E     K      +    K   ++I   +      +      +     G ++
Sbjct: 181 SFCQSFEIEKSELSKLKLSQFVSPENKGRLDKIWNALFRRGKAKGELPVRLR---SGEDR 237

Query: 276 SYKIVRVLNSFGEAGIAI--DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQ 329
            +++    N      ++I  D++++ ++  QL        E+  N   AI + + +  + 
Sbjct: 238 LFELTITSNILNGFYMSIMRDITEKRSMEKQLFKSEERFREVFENAMDAIILMNNDGRIV 297

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N+S  +++E+ +  L      D +    +  + + +Q + K                 
Sbjct: 298 KANQSACKIFELPMDQLLNKKMTDFIDRTDQRYHAIQKQYDQKGEIRAEL---------- 347

Query: 390 DTWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             + + NGQ   +  TS         + +  N++ +  +E +         +  +   +G
Sbjct: 348 -LFRMANGQYKELEFTSKRIMFDSQDLTILRNVSDRKRMEQELRESELKFRKVFNGSMDG 406

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           + +F     I  +NP    +      +L       N+    S Y+ E+            
Sbjct: 407 IVLFNNQYDIIDANPLAGKILSIPLEQLKT----SNLLDVISGYHIENAASPAKTISFEE 462

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            D++   L    + + +   + +II   N   +    +VT+    E  L + +       
Sbjct: 463 MDNDIPFLLSDQKRILEFSFKRNIIQNMN---LAMLRDVTERKELEERLRKSDTLHVVG- 518

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
                    +++E+R+P+T + GF  LLK S     N   + Y   I++    + +++ +
Sbjct: 519 ----ELAAGIAHEIRNPMTALKGFIQLLKGSIQ---NEDHALYFNVITSELKRIESIITE 571

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            L LA   A    + Y    +  ++ +    +  + + +N+++ +  +  +     +  +
Sbjct: 572 FLILAKPQA----IMYEEKNIVKIMQDTMDLLHAQANLDNVQMHLKCEDGIPLIYCEPNQ 627

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           L Q+F  IL NA++    G  V +    + +   I S+ + G  + ED  K +   F   
Sbjct: 628 LKQVFINILKNAIEVMPDGGNVYVSIKPKGDDHIIVSLADEGIGMTEDKLKRLGEPFY-- 685

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               + RG GLGL +    I  H G + + S +   TT +  +P ++
Sbjct: 686 --TTKERGTGLGLMVSYKIIEEHKGKIEVESEEGRGTTFHLTLPIRQ 730


>gi|254787892|ref|YP_003075321.1| MASE1/CHASE/His Kinase A/ATPase domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684334|gb|ACR11598.1| MASE1/CHASE/His Kinase A/ATPase domain protein [Teredinibacter
           turnerae T7901]
          Length = 757

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 8/285 (2%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           ++L   LEL+S SV+   I            +   +  +  + LT+  +  R A+  K+ 
Sbjct: 475 ETLVLWLELISGSVVVILIGLFMVFIMNRNLIVEKEVRKKTQELTQALDDARHANSAKSL 534

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PL +IIGF+  L  +   S + K  + +E I  +   LLNL+NDILDL+
Sbjct: 535 FLASMSHELRTPLNSIIGFSVRLLKNLNQSKDPKSYRSLEVIERNGRHLLNLINDILDLS 594

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            V+AG M ++   + L  LL+E   S+        + +++    ++ +  AD++RL Q+ 
Sbjct: 595 KVEAGKMSIDREWVSLKTLLDETVTSLTPLAESKGLTLELKM-VEVANVFADQKRLAQVL 653

Query: 692 SKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             ++SN + ++S G  + + + R+    +      V + G  I  +    VF R+     
Sbjct: 654 LNLVSNGIKYTSTGG-ISISSRRESREGHEGVAIDVVDTGVGIKPEDIDRVFRRYEQLDE 712

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  G GLGL++ E  +NLHGG +S+ S     +   C +P 
Sbjct: 713 PSHSSEVGTGLGLALAEELVNLHGGRLSVFSEYGEGSCFTCWLPL 757


>gi|238910122|ref|ZP_04653959.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 778

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|253687500|ref|YP_003016690.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754078|gb|ACT12154.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 951

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 162/367 (44%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     N L+    +R     
Sbjct: 350 QLEENEQFNRKIVASAPVGICILRINDGTNILSN----ELAHNYLNLLTHEDRLRITRII 405

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +          F  ++TS +   +         +++V             +   ++V+
Sbjct: 406 CEQQSK-------FVDVMTSRNHHLQISFVHSRYRNENV------------AICVLLDVS 446

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL    
Sbjct: 447 ARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPQDA 503

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +    + +  
Sbjct: 504 NRLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKR 563

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    D K+  S   D  RL Q+ S +LSNA+ F+  G  +I +    +G   F V++
Sbjct: 564 LTLYCFIDPKVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIIFEVGCRDGYLEFVVRD 622

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I S     + 
Sbjct: 623 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 682

Query: 784 INCRIPS 790
              RIP 
Sbjct: 683 FGVRIPL 689


>gi|116511253|ref|YP_808469.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106907|gb|ABJ72047.1| PAS/PAC sensor signal transduction histidine kinase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 475

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 156/385 (40%), Gaps = 37/385 (9%)

Query: 417 ENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           E++   Q +LE + N L       + ++ +GV      G I ++N +      T  N L 
Sbjct: 99  EDIVRTQNNLENQRNQL----DSILAYMVDGVIATDRRGNIIMANKSALHYLNTS-NELL 153

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +I ++     +Y             I + D   KS+   ++          I     
Sbjct: 154 MEKNIVDVLKIADQYNFYDLLEKEPEITIETHDAGNKSISLHIKFALFRRESGFI----- 208

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  +    ++T+  +AER               +  FV +VS+ELR+PLT++  + + L+
Sbjct: 209 SGIIAVLHDMTEQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEALE 254

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +       S ++      +  ++ +++D+L L+ +D   + LN   I L   L+   
Sbjct: 255 DGAIDD-KETASSFIGVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEIINLIAFLDYQI 313

Query: 656 QSIATKMH-------ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             +   +         +N  +      K      D  ++ Q+   I+ NA+ +S KG T+
Sbjct: 314 NRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTI 373

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFI 765
            +       D + S+K+ G  IP+     +F+RF      +   +  G GLGLSIV   +
Sbjct: 374 TISIETRERDVLISIKDEGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIV 433

Query: 766 NLHGGHVSISSS-DEGVTTINCRIP 789
            +HGG +  SS  +   TT +  +P
Sbjct: 434 KIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
 gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
          Length = 1127

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +  KN+ L  AD++K+ F+   S+ELR+PL  ++G  + L T   G +++     +E I 
Sbjct: 440 IQHKNQELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPISASHRHQLEIII 499

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NLVND+LD   +  G + +N     L+   + V +     +    IRI    D
Sbjct: 500 NSGQRLTNLVNDLLDYHKMRHGNLDINRHVADLSSATSLVLELSHHLLGNKPIRIINQVD 559

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L S  AD QRL Q+   ++ NA+ ++S+G  +++ A+  +      V + G  IP D 
Sbjct: 560 KSLPSVYADEQRLEQVLYNLIGNAIKYTSEG-KIVISASVVDQFLRVQVVDTGHGIPADE 618

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L GG + +SS      T +  +P 
Sbjct: 619 LEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLPL 676


>gi|156935733|ref|YP_001439649.1| aerobic respiration control sensor protein ArcB [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533987|gb|ABU78813.1| hypothetical protein ESA_03603 [Cronobacter sakazakii ATCC BAA-894]
          Length = 779

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 154/383 (40%), Gaps = 22/383 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           +N+  Q+ +E K   + ++Q           +D   + V     D      N A   L  
Sbjct: 130 QNMLEQLKVEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTG 189

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E +L         A   +    E+D       +  +++       G       +  E 
Sbjct: 190 KSEKQLIGLKPHEVYAPEAAEKVLETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEI 244

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             +P  +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIV 302

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G + +L  ++   L+++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +   
Sbjct: 303 GLSRILLDTE---LSAEQEKYLKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPVDFT 359

Query: 649 DLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             L +++     +  +  +R  +          + D  RL QI   ++SNA+ F+ +G  
Sbjct: 360 SFLADLENLSGLQAQQKGLRFVMEPVRPVPHKVLTDGTRLRQILWNLISNAVKFTQQGQV 419

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESF 764
            +  +  +N    F V+++G  IP++    +F  +         +   G G+GL++    
Sbjct: 420 TVRVSYNENEQLRFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRL 479

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
               GG +++SS     +T    
Sbjct: 480 AKSMGGDITVSSKPGQGSTFVLT 502



 Score = 45.3 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R   L+ +  E+ E  +   +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQNMLEQLKVEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYK 278
              G   ++ IG +  +++  E  ++++ +   EK F   VS           G    ++
Sbjct: 189 ---GKSEKQLIGLKPHEVYAPEAAEKVLETD--EKVFRHNVSLTYEQWLDYPDGRKACFE 243

Query: 279 I------VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           I       RV    G  G   D+++     D L  
Sbjct: 244 IRKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|149181381|ref|ZP_01859878.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148850944|gb|EDL65097.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 721

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 126/738 (17%), Positives = 285/738 (38%), Gaps = 59/738 (7%)

Query: 72  YHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKAT 131
           +  +L  +    ++ D      E      + ++I +      SF  + +      LS+  
Sbjct: 21  FRGVLAASPNPILIVDKDLSIIEANSSALELLEIDENSLLRESFVQFFQAVPSPILSQYE 80

Query: 132 EKLRKEGQSFDLVA-ETQNDCAIKIEGRVS----GSCAFLRILSLDGIYSELAETTLKCK 186
             +R+ G+  D     T       I+ +++       AFL +  +            K +
Sbjct: 81  SAVRQGGEIEDETLMTTAAGTIKHIDLKITKLNNSEYAFLFLRDITSDR-------EKQR 133

Query: 187 KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVFQKAIGESRKLF 244
               ++ +   +F      +   D+ G+I  AN ++ K    +   ++ +K +    + F
Sbjct: 134 NEHMNLHMLNNIFQQAAEGILLFDREGNIKEANQAFCKQVNLQKRDVLNRKVVSFIPRNF 193

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVN 302
             ++  ++       +     +           +         E  +AI  D++++  + 
Sbjct: 194 HLKL-IKIKELLDSGRQARGEMPITHSEGVSVVEFTTTPYVNHELHMAILRDITEKRQME 252

Query: 303 DQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            QL  + E+  +L      AI ++DQ+  +   NRS ++++E  L+ + T    D +   
Sbjct: 253 IQLKRSEELFKDLFEEAIDAIVLWDQDGRVLRANRSALKIFECSLSEILTKKIEDFV--- 309

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKD--TWHLPNGQTLHVIVTSNP---RGGTI 413
                  P ++   +  E++    K+    +D   + +PN Q  H+  TS      G  +
Sbjct: 310 ------YPLEM---SKFESVTQELKAKGAVRDEVMFLMPNNQLKHLEFTSKLHSVDGYNM 360

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +F N++ +  +E       +   +  +   +G+ +    G++  +NP    +  +++  
Sbjct: 361 TIFRNVSERHQMEKSLRESEERFRKIFEGTLDGMVLTNHSGQVVDANPVALEILSSDKEE 420

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L  G+ I++I     +   + D  +  + +          L+   E     +   S   L
Sbjct: 421 L-IGSDIKDIFKI--KENEDEDYLEYQSKLKREGQASLLKLKKIDEERCQHLELSSKYNL 477

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +   +    ++T+ V  +  L + +                +++E+R+P+T + GF  L
Sbjct: 478 LSNLNLTVIRDITEEVELQEQLRKSDTLSVVG-----ELAAGIAHEIRNPMTALKGFIQL 532

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+     S+ S    Y   I      + +++ + L LA   A    + Y    L  ++ +
Sbjct: 533 LEN----SMQSDHEMYFHVIKTELQRIESIITEFLILAKPQA----VQYQETDLIRIMKD 584

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA- 712
             + +  +   +N++ K   D  + +  A+  +L Q+F  I+ NA++   KG  + +   
Sbjct: 585 TLELLNAQAVMHNVQFKERYDKGIPAVFAEPNQLKQVFINIVKNAIEVMPKGGLISIGIS 644

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           A++  +   S+ + G  IP++  K +   F       + RG GLGL +    +  H G V
Sbjct: 645 AKNEEEVRISITDEGIGIPKEKIKKLGEPFY----TTKERGTGLGLMVTFKIVEEHEGTV 700

Query: 773 SISSSDEGVTTINCRIPS 790
            + S     TT +  +PS
Sbjct: 701 EVESELGKGTTFHIDLPS 718



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 139/402 (34%), Gaps = 37/402 (9%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQKAIGES 240
            L  ++  +    F+ +  +    +   D+   I+ AN S  +  E  E  + +++  + 
Sbjct: 8   KLAEEQRPSDTIDFRGVLAASPNPILIVDKDLSIIEANSSALELLEIDENSLLRESFVQF 67

Query: 241 RKLFKEEIKKRMISS-SALEKNFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAIDVSK 297
            +     I  +  S+     +   ET+ T   G  K     I ++ NS        D++ 
Sbjct: 68  FQAVPSPILSQYESAVRQGGEIEDETLMTTAAGTIKHIDLKITKLNNSEYAFLFLRDITS 127

Query: 298 EITVND----QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           +          L     I       I +FD+   ++  N++F +   +            
Sbjct: 128 DREKQRNEHMNLHMLNNIFQQAAEGILLFDREGNIKEANQAFCKQVNL------------ 175

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI-VTSNPRGG- 411
           +  + L          N+      I  +  S    +    + + + + V+  T+ P    
Sbjct: 176 QKRDVLNRKVVSFIPRNFHLKLIKIKELLDSGRQARGEMPITHSEGVSVVEFTTTPYVNH 235

Query: 412 --TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              + +  ++T +  +E +     ++  +  +   + + ++  DGR+  +N +   +++ 
Sbjct: 236 ELHMAILRDITEKRQMEIQLKRSEELFKDLFEEAIDAIVLWDQDGRVLRANRSALKIFE- 294

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY- 528
                     +  I       +        F ++      +       + L+ ++ L++ 
Sbjct: 295 --------CSLSEILTKKIEDFVYPLEMSKFESVTQELKAKGAVRDEVMFLMPNNQLKHL 346

Query: 529 ---SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
              S +   +   M  F NV++  + E++L E  E  RK  E
Sbjct: 347 EFTSKLHSVDGYNMTIFRNVSERHQMEKSLRESEERFRKIFE 388


>gi|197119551|ref|YP_002139978.1| HAMP/Hpt domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088911|gb|ACH40182.1| sensor histidine kinase response regulator, HAMP and Hpt
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 817

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 131/306 (42%), Gaps = 12/306 (3%)

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              +  G D    ++  F++    +Q   + L    +E     +   +T        +  
Sbjct: 225 LRAQKQGNDELGTLMDGFNEMLVQIQERDQKLEAHRIELE--EVVQRRTHELSAANRELS 282

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L    +A   A   K+ F+ ++S+E+R+P+  ++G   +L  S L     +Q  +
Sbjct: 283 QTVAELRFSKDAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLESGLAG---EQRCF 339

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E +  S   LL ++NDILD + ++AG M L+ + + L+ ++ EV +          + +
Sbjct: 340 AEAVRNSGESLLCIINDILDFSKIEAGRMHLDPAPMDLHGMMAEVLEMFGAGARSKGVGM 399

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724
           +  +   +  +V AD  RL QI   ++ NA+ F+S+G   +    L+   +     F V 
Sbjct: 400 ECRTAPDVPRYVEADLARLRQIVVNLVGNAVKFTSRGEVQLHAFQLEERGEERVLRFEVV 459

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  +    +F+ F    +   R   G GLGL+I      L GG + + S     +
Sbjct: 460 DTGIGIRPEALAHIFDSFTQADYSTTRSFGGTGLGLAIARQLAELMGGELGVVSEFGAGS 519

Query: 783 TINCRI 788
           T    +
Sbjct: 520 TFWFTL 525


>gi|169599701|ref|XP_001793273.1| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
 gi|160705302|gb|EAT89406.2| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
          Length = 1733

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 30/287 (10%)

Query: 525  VLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +LE S+      +T   T  ++ D    E+ L E  +        K+ F+ ++S+E+R+P
Sbjct: 1078 LLEKSLAEDSEEETWYGTATDINDHKLLEQTLKETMD-------AKSKFLSNMSHEIRTP 1130

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I G  + L  S    LN++Q ++V  I +S+  LLNL+NDILDL+ V+AG++KL+  
Sbjct: 1131 LNGISGMVNFLLDSI---LNAEQLEHVNIIKSSTDSLLNLINDILDLSKVEAGMIKLSME 1187

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFS 702
             + L  L+ EV         +  + +  + D  + S V  D+ R+ Q+   ++ NA+ F+
Sbjct: 1188 WLHLPSLIEEVNDLSMGLAIQKGLELNYLVDEGVPSMVKGDKFRIRQVLLNVVGNAIKFT 1247

Query: 703  SKGSTVILKAARDNGD-----------FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
            S G  + ++    + +             F V + G    E   K +F RF     +   
Sbjct: 1248 SSGE-IFVRCKVQSPERSGPLGDNETVVRFEVIDTGRGFTEQEAKFLFKRFSQIDASSTR 1306

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR----IPSKE 792
            Q  G GLGL+I   F+ LHGG +   S     +T        +P++E
Sbjct: 1307 QHGGTGLGLAISMQFVELHGGKMDARSVPNKGSTFFFTIKFGLPTEE 1353


>gi|153840375|ref|ZP_01993042.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AQ3810]
 gi|149745962|gb|EDM57092.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AQ3810]
          Length = 683

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 154/377 (40%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   +  
Sbjct: 44  ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPW 101

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   ++   ++D            D++  + +  LE         E   +P  +   
Sbjct: 102 DVYSKEIAQPIVDTDQKVFS-------DNQAITYEQWLEYPDGRKHYFELRKVPFYSKDG 154

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  S+
Sbjct: 155 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSQ 212

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   D + E++   
Sbjct: 213 ---LTEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESIS 269

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN 716
           A    +  +R  +     L  +   D  RL Q+   ++SNAM F+ +G  V  + A  + 
Sbjct: 270 ALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEE 329

Query: 717 GDFIF--SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   V++ G  IPE     +F  +             G G+GL++ +  IN+  G 
Sbjct: 330 DFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 389

Query: 772 VSISSSDEGVTTINCRI 788
           ++++S +   +T    I
Sbjct: 390 ITVTSEEGFGSTFTVSI 406



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
           ++IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  
Sbjct: 17  LEIEERIKAEEA--REEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNAD 74

Query: 213 GDILWANISYKKNT---ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
           G     N + ++ T   E + +        S+++ +  +       S  +    E     
Sbjct: 75  GVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEY 134

Query: 270 EHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
             G    +++ +V          G  G   D+++     + L  
Sbjct: 135 PDGRKHYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 178


>gi|120435983|ref|YP_861669.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
 gi|117578133|emb|CAL66602.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
          Length = 660

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 118/657 (17%), Positives = 238/657 (36%), Gaps = 61/657 (9%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV-WHRDQAGDILWANIS----YK 223
            ++ G+     +  ++   L N +  FK L  S   ++   R +   I  AN      ++
Sbjct: 29  KTISGLQDVSKDLEIENATLKNKVYSFKELIYSSPSMITLLRGKDLIIEIANRPILDFWQ 88

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVR 281
           K+    G    +A  + ++   E++   ++ S      +   V        +   +  V 
Sbjct: 89  KDENIIGKSLLEAHPDIKEQGLEQLLLEVMDSGEARYGYELPVYITRKNQKELSYFNFVY 148

Query: 282 VLNS------FGEAGIAIDVSKEI----TVNDQLTHTYEILHNLTVAIAIF-DQNRYLQF 330
                      G A +A +V+ +      + +      E++H+    IAI   ++  ++ 
Sbjct: 149 QPQKNIAGKLSGVAVMAQEVTPKAIFHKKIEESEYKYRELIHSSNSLIAILKGEDMIVEI 208

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-K 389
            N +  ++W      +   P  + L E +     +P            +S  +    H +
Sbjct: 209 ANDAIKKVWGKGSD-VEGKPLFEVLPEMVEQG--MPAIFKNVLDSGKAYSAQEKLINHLQ 265

Query: 390 DTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
           D    P           N RG   G   +  ++T Q  L  K     K   + ++ +   
Sbjct: 266 DDEMRPGYFDFIYQPQKNIRGEIDGVAVIANDVTNQGLLNQKIKESEKELRDLVNFMPLK 325

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V +    G     N ++R+           G  I  + +         D  +    +   
Sbjct: 326 VCMTNAKGVPVFYNNSWRNYT---------GKSIEELLSKSWMSLIHPDNREKVEMVAR- 375

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
                     +LE  SD  LE+ I    N Q        T     E  +T    +  +  
Sbjct: 376 ---------KSLETGSDIDLEFKIFD-ANGQAKWHLNRATAIRNEEGEITSWITSSTEIQ 425

Query: 567 EIKNS------FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS----KQSQYVEYISAS 616
           ++K+       F++ VS+EL++P+T+I G+  LL T    +           Y+  I   
Sbjct: 426 KLKDEENRKEGFLKLVSHELKTPVTSIKGYVQLLLTMLPEANQENGELPVKPYLNRIETQ 485

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L+ L++++LDL+ ++   M+L      LN  + E+ + I+    E  I +K   +  
Sbjct: 486 VERLIRLISEMLDLSRIEHNEMELKKEKFSLNHHVEEIIEDISYSNKEVQIELKHHCECD 545

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
               +AD+ R+ Q+    ++NA+ +S + + V +    +   +   SVK+ G  I +   
Sbjct: 546 ---VIADKDRIGQVIINFITNALKYSPEDNRVEVTVYNKTENEVAVSVKDFGIGIEKKEI 602

Query: 736 KSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F RF   +        G G+GL +    +  H G + ++S     +     +P 
Sbjct: 603 NKIFKRFYRVSGNRDETYAGFGIGLYLSNEIVKRHNGKIVVNSEFGIGSEFIFVLPL 659


>gi|42780166|ref|NP_977413.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
 gi|42736084|gb|AAS40021.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
          Length = 896

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     + + F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +T    IP
Sbjct: 718 SHVGEGSTFTVYIP 731


>gi|119716209|ref|YP_923174.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
 gi|119536870|gb|ABL81487.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
          Length = 1072

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 224/644 (34%), Gaps = 57/644 (8%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKK--NTETEGIVFQKAIGESRKLFKEEIKKR 251
           +++ + ++     W  D  G  L+ N + +       E ++         ++ KE+    
Sbjct: 6   LYRDIVETSPDGFWVFDLDGRTLYGNPALRAFFGVGPEELLQLTVFDSLDEVGKEQFADH 65

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSFGEAGIAIDVSKEITVNDQLTH 307
           +    A + N  +        +  +  +      V    G   +   +S        +  
Sbjct: 66  LDQLRAGKVNPHDVECRFVRRDGGTMWVTLSESLVPGPDGSVAVLHRLSDYSDRRRTVDD 125

Query: 308 TYEILHNLTVAIAI-------FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
                  L  A  I       +D      + +     L+ +D        S  + LE + 
Sbjct: 126 LTSSRRRLAEAQRIARIGSWEWDLAPDEIWGSEELCALYGLDPELFPA--SYADFLEIVH 183

Query: 361 SANK--LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
             ++  + E +       + F       T    W    G+ + +              ++
Sbjct: 184 EDDRGAVDEAVRGALEAPSDFVFVARVRTADGAWVWTRGRGVSLADADGRVASMYGTHQD 243

Query: 419 LTV----QVDLETKYNTLVKVQ------------GETIDHLSEGVAVFGPDGRIKLSNPA 462
           +T     ++ LE +    V +Q             + +      V +     R +   P 
Sbjct: 244 ITETKLAEIALEDQVRQNVLLQAMATAANEAATLEDVLLQARHLVLLHDDWVRGRAFVPT 303

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                      ++      ++AA      + +     F    + +D++R ++  T+    
Sbjct: 304 -EDRRAVVALHVTGEDQAADLAAPAQAAADLALANRAFLERGSVWDEDRLTIAFTVAHGD 362

Query: 523 DSVLEYSIIPLPN-----------AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           + V   +I   P             Q  +    V +  RA+R L +  +    A   K+ 
Sbjct: 363 EVVAVLTITSAPPLHRFELIEAMVEQVGVQLGRVAERERAQRELADARDVAMAASRQKSE 422

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+PL  +IG  DLL  +    L+  Q +    +  +S  LL ++NDILD +
Sbjct: 423 FLATMSHEIRTPLNGVIGLNDLLLRT---PLDPDQLRLASGVQVASRALLGVINDILDFS 479

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQI 690
            ++AG ++L      +  + ++V   +        + + V    ++   +  D  RL Q+
Sbjct: 480 KIEAGKLELERLDFEVRGVFDQVASLLGEAARAKGLELIVSCHSEVPEVLRGDPTRLAQV 539

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + + SNA+ F+ +G  V ++A    G         SV + G  +P +    +F  F+  
Sbjct: 540 ITNLGSNAVKFTEEGE-VFIRATASPGPAGRTRLHVSVTDTGVGVPANDVGELFEAFIQA 598

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                RR  G GLGL+I    +   GG + +  +  G +     
Sbjct: 599 DASTTRRFGGTGLGLAISREIVQALGGEIGMEPNPGGGSVFWFT 642



 Score = 44.2 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 4/140 (2%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            L  +  + ++   +G  VF  DGR    NPA R+ +      L   T   ++       
Sbjct: 2   ELAGLYRDIVETSPDGFWVFDLDGRTLYGNPALRAFFGVGPEELLQLTVFDSLDEVGKEQ 61

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--TMLTFVNVTDS 548
           + +     L A  +   D E + ++     +    L  S++P P+     +    + +D 
Sbjct: 62  FAD-HLDQLRAGKVNPHDVECRFVRRDGGTM-WVTLSESLVPGPDGSVAVLHRLSDYSDR 119

Query: 549 VRAERALTEKNEALRKADEI 568
            R    LT     L +A  I
Sbjct: 120 RRTVDDLTSSRRRLAEAQRI 139


>gi|332994707|gb|AEF04762.1| sensor protein BarA [Alteromonas sp. SN2]
          Length = 1043

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 11/258 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     N+         L    +   KA  +K+ F+ ++S+E+R+PL  I+GF+   +  
Sbjct: 400 TDDLRNNMELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTPLNGILGFS---REL 456

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL S Q + V  I+ ++  LL +VND+LD + ++AG +++N      N LL E+   
Sbjct: 457 THASLPSDQQEQVRIINTAADNLLTIVNDVLDFSKIEAGKLQINNQPFSPNTLLEEMVTI 516

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +A   H   +             + D  R+ QI + +L NA+ F+  G T+ L       
Sbjct: 517 MAKSSHSKKLEFVFDLAPLPEKLIGDVFRIKQILNNLLGNALKFTPSG-TITLAVKGRPL 575

Query: 717 ----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
                +   +V++ G  I     K +FN F           +G GLGL I    + L  G
Sbjct: 576 LHGIHEIEITVEDTGIGINRQDRKKLFNAFSQVDDSINRNYQGTGLGLVISRELVRLMRG 635

Query: 771 HVSISSSDEGVTTINCRI 788
            +++ S+    +T    +
Sbjct: 636 DLTLKSTPRQGSTFVVTL 653


>gi|317152240|ref|YP_004120288.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942491|gb|ADU61542.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 507

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 126/279 (45%), Gaps = 19/279 (6%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           S + + +  +  A T+  F+N          L    +A   A + K+ F+  VS+E+R+P
Sbjct: 191 SCISFIVAHVTYASTLRDFLNKHLIETRNVELEVARKAAEAASQAKSDFLAAVSHEIRTP 250

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  ++G T+ +  +    L+++Q  YVE    S+  LL+++NDILD + ++AG ++L   
Sbjct: 251 MNAVLGMTEAVLHT---PLDARQRDYVETARESALHLLDVLNDILDFSRIEAGRLRLVSE 307

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L  +++   +++  +  +  + +     +G       D  RL Q+   +L N + F+
Sbjct: 308 DFDLPAVVHSAMKTVGLEAGQKGVALDFEMMEGAPRFLRGDPGRLRQVLINLLGNGVKFT 367

Query: 703 SKGSTVILKAARDNGD-------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--H 747
            +G+  +     D G                FSV ++G  IP +  +++F  F       
Sbjct: 368 EQGAVRVTVGPWDGGQGGESPPDPERPVGVRFSVSDSGPGIPPEFGQAIFEAFRQGDGTT 427

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             +  G GLGL+I    + L GG +++ S+    +    
Sbjct: 428 SRRYGGSGLGLAICRDLVRLMGGEITVRSTVGRGSEFIL 466


>gi|262382051|ref|ZP_06075189.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262297228|gb|EEY85158.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 793

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 162/392 (41%), Gaps = 25/392 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAV---FGPDG--RIKLSNPAFRSLWKTEENRL 474
           TV  D+E      ++ Q  T D++  G         DG   +  +N  +      ++N  
Sbjct: 121 TVMTDVEDVMRRRIE-QTITYDNIP-GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSF 178

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLE------ 527
              +    +  T     N      L    +      + K+  G    L+   +       
Sbjct: 179 LSFSPFSRLDETSRNTMNAHISCMLKGEPVHFVIQSKDKNGNGAWLQLNGECIGWEGDEP 238

Query: 528 -YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            Y I+ +                +  + L E  ++  +A++ K++F+  +S+++R+P+  
Sbjct: 239 IYLIVYINITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSNFLARMSHDIRTPMNA 298

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G   + K       + +    +E I+ +S +LL+L+N++LD++ +++G + L+     
Sbjct: 299 IMGMATIAKAHV--DEHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFN 356

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           + +LL ++   +  ++      + +   + +  +   D QR+ Q+   ILSNA+ ++ + 
Sbjct: 357 VGELLQDLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPEN 416

Query: 706 STVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGL 758
             + ++    +     G++ F  ++NG  +  +    +F  F   +     + +G GLG+
Sbjct: 417 GRITIEIYEKDPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGM 476

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           SI    I + GG + + S     +     +P 
Sbjct: 477 SISHKIIQMMGGDIKVESEYGKGSRFTIDMPL 508



 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 58/400 (14%), Positives = 123/400 (30%), Gaps = 34/400 (8%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR--------MISSSALE 259
             D+   +LWAN  Y          ++        L+ +   +           + +   
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYLKEEYEALFHNKPDLYFKGYDEAWNILSKNVYETIANKA 84

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE---ILHNLT 316
             +   +        +  KI        + GI I  +    V D +    E      N+ 
Sbjct: 85  SGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQTITYDNIP 144

Query: 317 VAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             I+      D +  L   N  +++   ID     +      L E  R  N +   ++  
Sbjct: 145 GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSR--NTMNAHISCM 202

Query: 373 TWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPRGGTIWM-FENLTVQVDLETKYN 430
              E +  V +S + + +  W   NG+ +       P    +++   ++T Q +L+ K  
Sbjct: 203 LKGEPVHFVIQSKDKNGNGAWLQLNGECIGWEGDE-PIYLIVYINITDITEQRELQKKLE 261

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              K   E +    +       +   ++S+     +            H+          
Sbjct: 262 KQSKQLKEALKSAEQANQA-KSNFLARMSHDIRTPMNAIMGMATIAKAHVDEHERILDCM 320

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
              +    L  ++I    D  K   G L L  D   E+++  L     +   +   +   
Sbjct: 321 EKINGASKLLLSLINEVLDMSKIESGRLILSED---EFNVGELLQDLVV---MMQPEIKN 374

Query: 551 AERALTEKNEALRKAD------EIKNSFVQHVSYELR-SP 583
            ++ L    + LR  +       IK   +  +S  ++ +P
Sbjct: 375 KQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTP 414


>gi|329849065|ref|ZP_08264093.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328844128|gb|EGF93697.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 595

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 9/225 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL  I+G+  LLK+S L S    Q   V+ I  S   LL ++ DIL
Sbjct: 276 KSQFLANMSHELRTPLNAILGYAQLLKSSDLSSQ---QLSAVKTIQHSGEHLLTVITDIL 332

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           D+A V+AG M+L      +      V Q +  +  +  +   + I++      VAD +R+
Sbjct: 333 DIAKVEAGRMELMPGGFDIRACALTVGQMVRVRAEDKGLSFSISIAEDVPQYVVADEKRM 392

Query: 688 LQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+   +L NA+ F++ G    S  ++ A  ++    F+V + G  I  D   S+F  F 
Sbjct: 393 RQVLINLLGNAIKFTAAGEVRLSVTVVSAGEESARLCFAVSDTGVGIQADQLDSIFRPFE 452

Query: 744 SNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              +   +  G GLGLSI    + L GG + + S     +     
Sbjct: 453 QAGNSISKSGGTGLGLSITHQIVKLMGGDIKVESEVGQGSCFTVE 497


>gi|150025735|ref|YP_001296561.1| two-component system sensor histidine kinase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772276|emb|CAL43754.1| Probable two-component system sensor histidine kinase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 576

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 83/364 (22%), Positives = 161/364 (44%), Gaps = 19/364 (5%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           K +   K     I+++ + +      G I  +N     +          G  +  +    
Sbjct: 224 KLSFEKKRLETLINNMHDPIVGLDEQGFILFANNEALKI---------MGVKLDEVIGKL 274

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFVN 544
           +   N +   DL  ++I +  ++ K     +++ +D   S  E  I+ +    T      
Sbjct: 275 AA--NLALKNDLVKSLIMTELEDEKQKAVPMKIFADGKESYFEKEIVNIIIKPTGEENTI 332

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
               V   R +T   E     D  K +F+  +S+EL++P+++I     LL+  + G LN 
Sbjct: 333 YIGDVIILRNITPFKEL----DFAKTNFIATISHELKTPISSIKFSLQLLEKEQTGILNE 388

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q   VE I   S  LL +  ++L+L+ V+ G ++LN       D++    +++  +  +
Sbjct: 389 EQKYLVESIQDDSQRLLKITGELLELSQVETGNIQLNIEKSNPYDIVYYATEAVKIQAEQ 448

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             I + V +D KL +  AD+++   +    L+NA+ +SS+ S +I+K  ++N   IF V 
Sbjct: 449 KQIELVVEADEKLPNIKADKEKTAWVLINFLTNAIKYSSENSKIIVKLKQENNHIIFQVI 508

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  I       VF+++       +  G GLGL+I + FI    G +S+ S     +T 
Sbjct: 509 DTGKGIDNRYKSKVFDKYFQIPGSHKL-GTGLGLAISKEFIEAQNGTISVESELGLGSTF 567

Query: 785 NCRI 788
             ++
Sbjct: 568 AVKL 571


>gi|84393059|ref|ZP_00991825.1| sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84376311|gb|EAP93193.1| sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 1149

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 175/414 (42%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 602  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVIDKQMRLVAWNQ 661

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 662  RYLELFEFPAGLIQVGRPISDVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGTRHTSSRI- 720

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL----------------- 562
                 V+E    P+P+   +++F ++T   +AE+AL + NE+L                 
Sbjct: 721  RPDGRVIEVQGNPMPSGGFVMSFTDITVFRQAEQALKDANESLESRVHERTQELEKLNQR 780

Query: 563  --------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                     +  + K+ F+  VS++L  PL     F   L          + S ++E   
Sbjct: 781  LVKATQISDQESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEQEEKQLSSHIESAL 840

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G ++ N   I ++D+L  +    +    +  I+ ++I  
Sbjct: 841  GAAE---DLIGDLLDISRLESGKLETNIHAIAVHDVLTNLNAEFSALATQQKIQFQMI-- 895

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++ +G  V+L A R NG     V +NG+ I ED 
Sbjct: 896  PSSLFIHSDPKLLRRVIQNFLTNAFRYNPEG-KVVLGARRVNGQVRIDVWDNGTGIDEDK 954

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F   +     +G+GLGL+I +   ++ G  +S+ S     +  +  +
Sbjct: 955  QQEIFEEFTRGSQVRADQGLGLGLAISKGIAHVLGHQISMRSWPGEGSVFSITL 1008



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 622 VDEASELYDFSRGLLQGAIEHIGQGIAVIDKQMRLVAWNQRYLELFEFPAGLIQVGRPIS 681

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 682 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGTRHTSSRIRPDGRVIEVQGNPMPSGGFV 740

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV    E       +    
Sbjct: 741 MSFTDITVFRQAEQALKDANESLES 765


>gi|124268770|ref|YP_001022774.1| sensor histidine kinase/response regulator [Methylibium
           petroleiphilum PM1]
 gi|124261545|gb|ABM96539.1| sensor histidine kinase/response regulator [Methylibium
           petroleiphilum PM1]
          Length = 1153

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 128/261 (49%), Gaps = 6/261 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q  L    +    R + AL    E    A++ K  +V  +++ELR+PL +I+G+  +L
Sbjct: 667 NRQNQLLTREIDAHQRTDAALQAAKEVAESANQAKTRYVAGMTHELRTPLNSILGYAQIL 726

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              K G L++   + V  I  S   L+ L++ +LDLA ++AG ++L  + + L   L+E+
Sbjct: 727 L--KDGVLSAAPREAVHTIRRSGEHLMGLIDGLLDLARIEAGRLRLEPAALPLPAFLDEL 784

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + +  +     +       G++ ++V AD +RL QI   +LSNA+ F+ +G TV L   
Sbjct: 785 VRMVQPQAQAKRLAFVYTHSGRMPAWVHADAKRLRQILINLLSNAVRFTDEG-TVTLHVD 843

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V + G  I     + +F  F   A   +R   G GLGL+I     +L GG 
Sbjct: 844 CRREVVRFDVVDTGIGIAPQDQQRIFMPFERGAAGRRRGEPGTGLGLTITALLTSLMGGE 903

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S+    +T + R+  +E
Sbjct: 904 LGLVSAPGRGSTFSVRLYLRE 924


>gi|161521751|ref|YP_001585178.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189352086|ref|YP_001947713.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160345801|gb|ABX18886.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189336108|dbj|BAG45177.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 1001

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 114/698 (16%), Positives = 235/698 (33%), Gaps = 78/698 (11%)

Query: 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
                 +L  A  +L   G++        +   +       G+ A+ R ++L    +++ 
Sbjct: 103 TPAQLRRLDDAHGRLIVTGRA-----GLPSTAVLADLAHDRGAAAYSRYVALLFQQTDMI 157

Query: 180 ETTLKC-------KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
             ++           L      F  +              G +     +         + 
Sbjct: 158 AVSMPHTINAGLSAYLIGTGGDFIGIVGIQPV--------GRLTGRLDAIDVRALIRSVE 209

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA 292
             + IG   +         + +                      +++ R +       IA
Sbjct: 210 PHRGIGVPLRTIDGRDDALLDTRDDTLLG------------RPVWRLSRPVRDASGQPIA 257

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL----AT 348
             V   I    Q+    +       A A+ D    +         L E  LAF       
Sbjct: 258 WLV---INTRAQVGTIMKP-DYADDAHALVDARGTIAVGAPVEAALVERALAFARAPGDV 313

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             +   +       ++LPE        + +F    S  +  +   +P G T      +  
Sbjct: 314 RAAVHRVGTRFVIGDRLPE-------SDLVFVTTFSWRSVVEALAVPLGVT---AGAALF 363

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKV------QGETIDHLSEGVAVFG-PDGRIKLSNP 461
               +W+   L  +  L   Y   +++          I     G+A+    DG   +SN 
Sbjct: 364 AIAVLWLAIVLFDRRALRPAYRRAIRLIESDALNRALIRTAPAGLALLSLADGDEIVSNE 423

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +              +     R Y E      +A ++T           T  ++
Sbjct: 424 TMARYERLAAGAP--------LGKRLWRAYREHRDASGYAKVVTCELPIAPDRADTPHVV 475

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           ++ ++      +     + T  ++T   + E+ L E   A   A++ K++F+  +S+E+R
Sbjct: 476 AN-IMRTRYRGVD--ALLCTLTDITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIR 532

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+G  +L+  + L        + ++ I++SS  LL +++D+LDL+  ++  M + 
Sbjct: 533 TPLNAIVGNLELMARAPLAPTE---RRRLDTIASSSDALLRIIDDVLDLSKAESNQMTIE 589

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMD 700
                + D+L+++            + +      +L   +V D  RL QI S ++ NA+ 
Sbjct: 590 RIPFDVRDVLDDIAAFYRPLASAKGLELTCRVAPELADGYVGDPVRLRQIVSNLVDNAIK 649

Query: 701 FSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGV 754
           F+ +GS  I    +            V + G  IP D   ++F+ ++        +  G 
Sbjct: 650 FTERGSVSIDAQRVVRGAGGARVEIRVADTGIGIPADSLPTLFDVYIQADASIYRRFGGT 709

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL +      L  G + + S +   TT+   +P  E
Sbjct: 710 GLGLPLCRRIATLMHGDLLVDSREGEGTTMCVTLPLPE 747


>gi|296329677|ref|ZP_06872162.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674074|ref|YP_003865746.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153175|gb|EFG94039.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412318|gb|ADM37437.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 738

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 127/769 (16%), Positives = 293/769 (38%), Gaps = 66/769 (8%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
           ++  + L +++       + +  +L+++  ++        + D +    +      + + 
Sbjct: 6   VQTNSELREELKRLKEENARLKKELNQHQVIVNNTLDAIFICDNEMRIVQANEATERMLQ 65

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA 164
           +   D    S  ++L      +L+ A +K  K+G  F        +  I+++G   G+  
Sbjct: 66  VDSEDLKKRSVLDFLFSIPKDELNHAVKKFFKKG--FL-----WKEVPIRLDG---GATK 115

Query: 165 FLRILSLDG--------IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           ++  L+  G        +  +++   +  ++ S +  +FK LFD     +   D+ G  +
Sbjct: 116 YIEFLAKRGIGEDFFFVVMRDISSKKILEREFSMNEQLFKDLFDRAVDGIVLFDKDGGFI 175

Query: 217 WANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST-LEHGNN 274
            AN+S+ K+ +  +  +   ++ E       +    +  +   +      +   L  G  
Sbjct: 176 DANLSFCKSFQINQNELSHLSLYEFIDSGSRKDFDNIWKTLNRKGKAKGELPVKLRSGVQ 235

Query: 275 KSYKIVRVLNSFGEAGIAI--DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYL 328
           K ++     N      ++I  D++++ ++  QL        EI  N   AI I+  +  +
Sbjct: 236 KLFEFTITSNIISGFYMSIMRDITEKRSMELQLFKSEERFREIFENAMDAIIIWSNDGRI 295

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              N+S  +++E+ +  L        L +FL  +     Q  +   K       +  E  
Sbjct: 296 VKANQSACKIFELPMNLLLKR----RLCDFLVDS-----QQKYSITKRKYAKYGEIRE-- 344

Query: 389 KDTWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           +  + + NGQ   +  TS         + +  N++ +  +E +         +  +   +
Sbjct: 345 ELLFQMGNGQFKELEFTSKRTILENQHLTILRNVSDRKRMEKELRESELKFRKVFNGSMD 404

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G  +F    RI  +NP    +       +   + +  I++                A   
Sbjct: 405 GNVLFDNQYRIIDANPLASHILGLSHEEIKQHSLLDIISSYEIENLASP-------ARQI 457

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           +FD+    +   L    +  LE+S    +     +  F +VT+    E  L + +     
Sbjct: 458 NFDEMDNEIPFLLSSSDNRKLEFSFKRNIIQNMNLAIFKDVTERKELEERLRKSDTLHVV 517

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
                      +++E+R+P+T + GF  LLK    GS+    + Y   I++    + +++
Sbjct: 518 G-----ELAAGIAHEIRNPMTALKGFIQLLK----GSVEGDYALYFNVITSELKRIESII 568

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            + L LA   A    + Y    +  ++ +    +  + + +N++I +     +     + 
Sbjct: 569 TEFLILAKPQA----IMYEEKHVTQIMRDTIDLLNAQANLSNVQIHLDLIDDIPPIYCEP 624

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +L Q+F  IL NA++    G  + +     D    + S+++ G  + ED  K +   F 
Sbjct: 625 NQLKQVFINILKNAIEVMPDGGNIFVTIRTLDQDHVLISLRDEGIGMTEDKLKRLGEPFY 684

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                 + RG GLGL +    I  H G + + S +   T  +  +P ++
Sbjct: 685 ----TTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHLTLPVRQ 729


>gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
 gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
          Length = 1128

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALR 563
           TSF+  RK   G L       L +  +     + + T     + + +  + + ++NE L+
Sbjct: 401 TSFNTVRKDEIGRL------ALSFERMQRSIREKIQTIKKQNEELESNIQIIQKQNEELQ 454

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ I  S   L NL
Sbjct: 455 LADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDIIIKSGQRLANL 514

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V+D+LD   +  G M +  S + L      V +  +  +    IRI       L +  AD
Sbjct: 515 VDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLELSSHLLGSKTIRIINQVPADLKAVSAD 574

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F   +
Sbjct: 575 PQRLEQVLYNLIGNAIKYTSEG-KIVISANVVDDHVRVQVVDTGQGIPAEQLEHIFEPLI 633

Query: 744 SN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                    R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 634 QAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 682


>gi|209696233|ref|YP_002264163.1| membrane associated response regulator, histidine kinase [Aliivibrio
            salmonicida LFI1238]
 gi|208010186|emb|CAQ80513.1| membrane associated response regulator, histidine kinase [Aliivibrio
            salmonicida LFI1238]
          Length = 1148

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 170/414 (41%), Gaps = 32/414 (7%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  +G  + + E  T+  +    Y+    +    I+H+S+G+AV     ++   N
Sbjct: 596  RLVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHISQGIAVVDKQMKLVAWN 655

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              +  L+      +  G  I ++    +       G             ER +   +  +
Sbjct: 656  QRYLELFTFPAGLIQVGRPIADVIRHNAEQGLCGPGDPEVHVKRRVEHLERGTRHVSSRI 715

Query: 521  LSDS-VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR---------------- 563
             +D  V+E    P+PN   +++F ++T   +AE+AL E NE+L                 
Sbjct: 716  RADGQVIEVQGNPMPNGGFVMSFTDITVFRQAEKALKETNESLEFRVHERTKELEKLNQR 775

Query: 564  ---------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                     KA   K   +  VS++L  PL     F   L          K S ++E   
Sbjct: 776  LVGATQSAEKASHSKTRLLAAVSHDLMQPLNAARLFASSLSEVAKDGETKKISGHIESAL 835

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++     L+ D+LD++ ++AG ++ N     L+ +L+ ++        +  I   VI  
Sbjct: 836  GAAE---ELIGDLLDISRLEAGKLETNVHGFSLHHMLSNLEAEFGALAKQQGIDFSVIHS 892

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              +    +D + L ++    L+NA  ++ +G  V+L A R  G     V ++G  IPE+ 
Sbjct: 893  DVV--VESDPKLLRRVLQNFLTNAFRYNPEG-KVVLGARRIEGKIRLDVWDSGIGIPEEK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +++F  F         +G+GLGL+I     ++ G  +S+ S     +  +  +
Sbjct: 950  QQAIFEEFTRVDQSRADQGLGLGLAIARGISHVLGHTISLRSWVNNGSVFSVTL 1003



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 70/209 (33%), Gaps = 10/209 (4%)

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
           +K   ++ + F ++    ++               +  G        R++ +    G  +
Sbjct: 550 RKRARKAFRQFAQQHGDALLPQQQASSQLIRHTERVLAG-VFGASSSRLVLTSALQGRNM 608

Query: 294 DVSKEITVNDQLTHTYEI--------LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            + +  T+ D+ +  Y+         + +++  IA+ D+   L   N+ ++EL+      
Sbjct: 609 QLEEVATIVDEASELYDFSRGLLQGAIEHISQGIAVVDKQMKLVAWNQRYLELFTFPAGL 668

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +       +++             + +   +      +    H  +    +GQ + V   
Sbjct: 669 IQVGRPIADVIRHNAEQGLCG-PGDPEVHVKRRVEHLERGTRHVSSRIRADGQVIEVQGN 727

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVK 434
             P GG +  F ++TV    E       +
Sbjct: 728 PMPNGGFVMSFTDITVFRQAEKALKETNE 756


>gi|149375696|ref|ZP_01893465.1| two-component sensor histidine kinase protein, putative
           [Marinobacter algicola DG893]
 gi|149360098|gb|EDM48553.1| two-component sensor histidine kinase protein, putative
           [Marinobacter algicola DG893]
          Length = 1126

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 121/254 (47%), Gaps = 5/254 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R ++AL +  E    A+  K+ ++  +S+ELRSPL  I+G+  L++ 
Sbjct: 641 QTRLLTEEIVAHERTDQALQQAKEHAEAANGAKSRYLTGISHELRSPLNAILGYAQLMEN 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               ++   +   +  I  S   L +L+  +LD++ ++AG + L+   + ++ L+ ++  
Sbjct: 701 D--TAIPDNRKDALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDEVRIDLLMEQLVH 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  E  +        +L   V  D +RL QI   +LSNA+ ++  GS + L     
Sbjct: 759 MFRLQAEEKGLAFSYHGPTRLPELVTTDEKRLRQILINLLSNALKYTDNGS-ISLTLKYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSI 774
           +    F++K+ G  I E+  + +F  F      GQ R G GLGL+I      + GG +S+
Sbjct: 818 SQVAEFTIKDTGEGIAEENIERIFRPFERIRTPGQSRTGTGLGLTITRLLTEIMGGDLSV 877

Query: 775 SSSDEGVTTINCRI 788
            S+    +T    +
Sbjct: 878 ESTPGEGSTFRVSL 891


>gi|114569187|ref|YP_755867.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339649|gb|ABI64929.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 535

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 21/389 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +F +   ++  E             +   S+G+  F  +      +   R L   + 
Sbjct: 145 MLAVFNHYRRRLTGEILAAESGDRAALAMKGTSDGIVDFCLETDQIFISARGRELLGYQP 204

Query: 472 NRLSPGTHIRN--IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             L+  T      I A     +  +      A          K + G         +   
Sbjct: 205 RELTAATETFTNLIHADDRPRFQSAQQSHYRAGRPFDLTVRLKVVGGLHRWFR---MRGE 261

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +  P+   +     +TD       L E  +   +A   K+ F+  +S+E+R+P+  ++G
Sbjct: 262 AVRTPDGDPVRMVGAMTDIH----DLVEARQQATEASRAKSRFLATMSHEVRTPMNGVLG 317

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            + LL T+    L   Q + V  I  S   LL ++NDILDLA +++G  ++   T    +
Sbjct: 318 MSALLATT---DLEPSQREMVNLIEGSGQALLTILNDILDLANIESGRFEVEQDTFNPAE 374

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           L+  V      K  E  + + +  D       V D  R+ QI S +LSNA+ FS +G  V
Sbjct: 375 LVRTVAGPYRMKAMEKGLNLHLEIDPVAEREVVGDPARVRQILSNLLSNAVKFSDRGE-V 433

Query: 709 ILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            ++      A    D  F V + G  +  D+   +F  F       + +  G GLGL+I 
Sbjct: 434 RVRCLMTQTADRAHDVTFEVGDTGIGMDGDLMSRIFMPFSQGEAVMQRKNGGTGLGLAIA 493

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    L GG +++ S+    +    ++P+
Sbjct: 494 KKLAELMGGDITVESAPGAGSKFTVKLPA 522


>gi|73538868|ref|YP_299235.1| PAS [Ralstonia eutropha JMP134]
 gi|72122205|gb|AAZ64391.1| PAS [Ralstonia eutropha JMP134]
          Length = 855

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 160/385 (41%), Gaps = 28/385 (7%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +++T         + L+++         + +     DG     NPAF S+     + L  
Sbjct: 90  DDVTAPTQAADHRDPLLELSL-------DLICEASGDGYFTRVNPAFTSVLGWRADELLA 142

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +  +A        E     +    I  F +      G +       L +  +   + 
Sbjct: 143 RPFLDFVAPEDRARTQELVRSHVKGNPIEDFQNRYLCKDGAV-----RWLSWRAVLRDDG 197

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               T  +VT S  A+  +    +    A   K++F+  +S+E+R+P+  +IG  ++L  
Sbjct: 198 TLYATARDVTQSRIAQLEIERARQEAEAASRAKSAFLAMISHEIRTPMNGVIGMIEVLTR 257

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +   +L++ Q + V  +  S+  LLN+++DILD + ++A  M++    + +   +  +  
Sbjct: 258 T---TLSADQREMVATVRESAAALLNIIDDILDFSKIEADKMRIECVPLSIEHTVETLCA 314

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS---KGSTVILKA 712
           S+      NN+ + +  D  L +  + D  RL Q+   ++ NA+ FS     G  V L+ 
Sbjct: 315 SLVLLAERNNVALYLDIDPGLPAQVLGDDLRLRQVLYNLVGNAIKFSGGALPGGRVYLRI 374

Query: 713 ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG-----LGLSIVESFIN 766
           A   GD + F +++NG  +P D   ++F  FV       RR        LGL+I      
Sbjct: 375 APAGGDVVRFEIEDNGIGMPPDAMATLFQPFVQAETTTTRR---FGGTGLGLAICRRLTE 431

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           L GG ++ +S      T    +P +
Sbjct: 432 LMGGSIAAASQPGAGATFTVCLPLR 456


>gi|330874568|gb|EGH08717.1| sensory box histidine kinase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 595

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +     +
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGEALS 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEAKARYEGQAQEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DIQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|310640016|ref|YP_003944774.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244966|gb|ADO54533.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 12/252 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A+  L E+ + L  A + K+ F+  +S+ELR+PL +II    ++          +  Q
Sbjct: 214 QKAKVILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQIINEQGKELDEDELYQ 273

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y + I AS   LL L+NDILDL+ V+AG M++    + + ++   +         + N+ 
Sbjct: 274 YSDLIYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQGMMMHFEVTAKDKNLE 333

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--------RDNGDF 719
             +     +     +D +R+ QI   +LSNA  F+ KG  V+L+ +        ++    
Sbjct: 334 FNLKVHEHIPDEIRSDSKRVQQILRNLLSNAFKFTHKG-RVLLEISTQHLDRKGQEGDWV 392

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F+VK+ G  I +     +F  F         +  G GLGLSI   F  L GG + + S 
Sbjct: 393 VFAVKDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGFIRLESE 452

Query: 778 DEGVTTINCRIP 789
           +   +T +  +P
Sbjct: 453 EGKGSTFSLYLP 464


>gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
 gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
          Length = 964

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 123/241 (51%), Gaps = 7/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +   +A+  K++F+  +S+E+R+P+  I+G T LLK ++   LN++Q +    I+
Sbjct: 461 LEKARKQAEEANRAKSTFLATMSHEIRTPMNGILGTTSLLKDTQ---LNTEQQRLTSTIA 517

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-IS 673
            S  +LL ++NDILD + ++AG +        ++ ++  +         E ++ +   ++
Sbjct: 518 ESGNVLLCILNDILDYSKIEAGQLTFEQIPFSVHTIIERLITLFTPLAQEKDLSLTYHVA 577

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPE 732
           D      + D  RL Q+ S +LSNA+ F+  G   + + A     + IFSV ++G  IP+
Sbjct: 578 DNVPDGSLGDPARLYQVLSNLLSNAIKFTEVGGIQLQVTANSTQSELIFSVIDSGIGIPK 637

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D   S+F+ F        RR  G GLGL+I +  I    G VS+ S     +T    +P 
Sbjct: 638 DKISSLFDAFSQAEDSTSRRYGGTGLGLAICDKLIKGMQGTVSVESELHKGSTFTFTLPM 697

Query: 791 K 791
           +
Sbjct: 698 E 698


>gi|311277818|ref|YP_003940049.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747013|gb|ADO46765.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 775

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 24/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E +     ++Q           +D   + V     D      N A   L    E 
Sbjct: 134 EQLKVEMQEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 193

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 194 QLIHLHPQDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 248

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 249 YYDRVGKRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  +    L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + 
Sbjct: 307 ILLDT---DLTAEQEKYLKTIHISAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFMA 363

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++
Sbjct: 364 DLENLSGLQAQQKGLRFVMEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVR 422

Query: 712 AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD   F V+++G  IP++    +F  +         +   G G+GL++ +     
Sbjct: 423 VRYDAGDMLRFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKN 482

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG +++SS     +T    
Sbjct: 483 MGGDITVSSLPGKGSTFTLT 502



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  +L+ +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQSTLEQLKVEMQEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q      + ++  E  +++I +   EK F   VS           G    ++I
Sbjct: 189 GKS--EKQLIHLHPQDVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|299821103|ref|ZP_07052991.1| sensor histidine kinase [Listeria grayi DSM 20601]
 gi|299816768|gb|EFI84004.1| sensor histidine kinase [Listeria grayi DSM 20601]
          Length = 610

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT ++ + +       +     + ++++GV      G++ L N     + +
Sbjct: 240 GELAESFNMLTKRLQEAQAMTEGERRKLSSVLSYMTDGVIATDRRGKVILINSPAEKMLR 299

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                 + G  I ++      Y      ++    I  +   +R        L ++    +
Sbjct: 300 IPHEE-ANGKSIIDVLDIGEDY-----EFEDLMDIDEALTLDRTIYNKPFILKAN----F 349

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           SII             + D    E           K ++ +  FV +VS+ELR+PLT++ 
Sbjct: 350 SIIQRETGFVNGVIAVLHDITDQE-----------KVNQERRDFVSNVSHELRTPLTSMN 398

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L+            Q++E     +  ++ LVND+L L+ +DAG   L  S +   
Sbjct: 399 SYLEALRDGAWED-KEIAPQFLEVTQNETERMIRLVNDLLKLSRMDAGRESLEKSFVNFT 457

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M ++ I               D  +++Q+   I+SNA  +S  G  +
Sbjct: 458 DFFNHIIDRFE-MMKKDTIMFIRHIPKLPIIIEIDEDKIMQVMDNIISNANKYSPDGGRI 516

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                + +     SV + G  IP++    VF+RF  V  A   +  G GLGL+I +  I 
Sbjct: 517 SFYLKKWSDKIQISVSDEGLGIPDEDLDKVFDRFFRVDKARSREMGGTGLGLAIAKEVIE 576

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGGH+    ++   TTI+  +P
Sbjct: 577 SHGGHIWAERNNGRGTTIHFTLP 599


>gi|168463446|ref|ZP_02697363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195633140|gb|EDX51554.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 778

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|16329960|ref|NP_440688.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652446|dbj|BAA17368.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1747498|gb|AAB39105.1| phytochrome/histidine kinase like [Synechocystis sp. PCC 6803]
          Length = 1371

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/522 (18%), Positives = 198/522 (37%), Gaps = 32/522 (6%)

Query: 294  DVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            ++S+      +L    +    I       I   D+   +   NR+  E+     A L   
Sbjct: 854  ELSERQRAEQKLLEVNQLQKGIFDVANYMIISTDRRGIISTFNRTAEEILGYTAAELIGQ 913

Query: 350  PS---NDELLEFLRSANKLPEQLNWKTWKENI-----FSVYKSSETHKDTWHLPNGQTLH 401
             +     +  E    A +L +QL       +I      ++       + T+    G  L 
Sbjct: 914  QTPLIFHDQEEMASEAVQLSQQLQQTIRPNSIDMFAIPAIQWGVYEREWTYITKTGDRLP 973

Query: 402  VIVT----SNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            V V+     + +G   G + +  +L  Q  +E +   L       + + +E + +   + 
Sbjct: 974  VYVSITALRDDQGKVDGLVGVITDLRRQKQIERERQNL----DFVVKNSTELIVITDLEQ 1029

Query: 455  RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            ++   N A +SL   E    +  T+   ++   S  Y      ++   +  S   E +  
Sbjct: 1030 KVTFLNQAGQSLIGLENPETAQTTY---LSEHISPEYLNFWQMEIIPQVFRSGAWEGEFS 1086

Query: 515  QGTLELLSDSVLEYSIIPLPN------AQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                +   +  +  S+  L        A  +    ++T    AE+ +    EA ++  E+
Sbjct: 1087 LQHYQTAVEIPVTASVFLLQGVNGQHPANLVAIVHDITHIKNAEKRILAALEAEKELGEL 1146

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            ++ F+   S+E R+PL  I   T +LK         ++ Q++E I  S   ++ L++D+L
Sbjct: 1147 RSRFISTTSHEFRTPLAIISSSTGILKKYWPKLDGQRRGQHLERIEESVHHMVELLDDVL 1206

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
             +   +   +      + L      +   + +    + +       G       D + L 
Sbjct: 1207 TINRAETKYLPFEPQPLDLVSFCRGITDELQSSTEYHGLLFSYDGLGPGEIVAFDPKLLR 1266

Query: 689  QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            QI + +L NA+ +S  G  V     R     IFSV+++G  I  +   ++F+ F    + 
Sbjct: 1267 QILTNLLGNAIKYSPSGQPVEFHLQRRGDVGIFSVQDHGIGIGPEDIPNLFDSFYRGTNV 1326

Query: 749  GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G   G GLGL IV+    LHGG ++++S     +     +P 
Sbjct: 1327 GSIPGTGLGLPIVKKCAELHGGMITVTSQLGQGSRFEVELPL 1368



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 93/322 (28%), Gaps = 54/322 (16%)

Query: 276 SYKIVRVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFH 331
           +++I     +     +A DVS     E  ++ +      +++ +   I I D +  + + 
Sbjct: 420 AFEIDGSGQTSKILCLAQDVSHGKRAEAALHTKEQQLQTLVNTIADGIVILDNHDKVIYA 479

Query: 332 NRSFVELWEID-LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           N    +++ +    FL +        +     N  PE        E      K+   H  
Sbjct: 480 NPMACQMFGLSKEEFLQSQLGLSNRGQTEIGINVSPE--------EEGIGEIKAVPIH-- 529

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            W   +                +    ++T +  +  K     ++    ++ L   V   
Sbjct: 530 -WQGED--------------CRLVTVRDVTDRQRVLKKLRDSEQIHRSLLEALPNLVWRL 574

Query: 451 GPDGRIKLSN--------PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G +   N           R +      +        N+     +     + + L   
Sbjct: 575 SSAGDVWECNQRTLAYFGRRGRKILGNTWQQFIEPGERENVQRQWRQGIAAQEFFQLECR 634

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +       R   Q    LL    LE     +     + +  ++ D   AE+AL  + +  
Sbjct: 635 LW------RSDGQYRWHLLQVLPLEDRFGSI--NGWLASSTDIDDLKEAEKALRNQAQQ- 685

Query: 563 RKADEIKNSFVQHVSYELRSPL 584
                     +  +S  +R  L
Sbjct: 686 -------EKLLSSISQRIRESL 700



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 107/307 (34%), Gaps = 55/307 (17%)

Query: 174  IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
            +  EL+E     +KL     + K +FD  ++++   D+ G I   N + +   E  G   
Sbjct: 851  LQEELSERQRAEQKLLEVNQLQKGIFDVANYMIISTDRRGIISTFNRTAE---EILGYTA 907

Query: 234  QKAIGESRKLFKEEIKKRMISSSALEKNFCETV----------STLEHG--NNKSYKIVR 281
             + IG+   L   + ++    +  L +   +T+            ++ G    +   I +
Sbjct: 908  AELIGQQTPLIFHDQEEMASEAVQLSQQLQQTIRPNSIDMFAIPAIQWGVYEREWTYITK 967

Query: 282  VLNS-----------------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ 324
              +                   G  G+  D+ ++  +  +  +   ++ N T  I I D 
Sbjct: 968  TGDRLPVYVSITALRDDQGKVDGLVGVITDLRRQKQIERERQNLDFVVKNSTELIVITDL 1027

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
             + + F N++   L  ++    A      E        +  PE LN+  W+  I      
Sbjct: 1028 EQKVTFLNQAGQSLIGLENPETAQTTYLSE--------HISPEYLNF--WQMEIIPQVFR 1077

Query: 385  SETHKDTWHLPNGQT------------LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
            S   +  + L + QT            L  +   +P    + +  ++T   + E +    
Sbjct: 1078 SGAWEGEFSLQHYQTAVEIPVTASVFLLQGVNGQHPAN-LVAIVHDITHIKNAEKRILAA 1136

Query: 433  VKVQGET 439
            ++ + E 
Sbjct: 1137 LEAEKEL 1143



 Score = 44.9 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 377 NIFSVYKSSETHKDTWHLPNG-QTLH---VIVTSNPRGG------TIWMFENLTVQVDLE 426
              +  ++ E  +  +   +G Q++H   V +++    G       + + ++++     E
Sbjct: 387 EELAALQAHEKKEFNFEFTDGGQSVHYFVVEISAFEIDGSGQTSKILCLAQDVSHGKRAE 446

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              +T  +     ++ +++G+ +     ++  +NP    ++  
Sbjct: 447 AALHTKEQQLQTLVNTIADGIVILDNHDKVIYANPMACQMFGL 489



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 18/157 (11%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI---SY--KKNTETEG 230
            ++ +     KKL +   + + L ++L  LVW    AGD+   N    +Y  ++  +  G
Sbjct: 541 RDVTDRQRVLKKLRDSEQIHRSLLEALPNLVWRLSSAGDVWECNQRTLAYFGRRGRKILG 600

Query: 231 IVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIVRVLNSF--- 286
             +Q+ I    +   E ++++     A ++ F  E       G  + + +  +       
Sbjct: 601 NTWQQFIEPGER---ENVQRQWRQGIAAQEFFQLECRLWRSDGQYRWHLLQVLPLEDRFG 657

Query: 287 ---GEAGIAIDVSKEITVNDQLT---HTYEILHNLTV 317
              G    + D+         L       ++L +++ 
Sbjct: 658 SINGWLASSTDIDDLKEAEKALRNQAQQEKLLSSISQ 694


>gi|320158481|ref|YP_004190859.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
 gi|319933793|gb|ADV88656.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
          Length = 1199

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 157/357 (43%), Gaps = 15/357 (4%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           + +D +   +++    GR+ LSN A+++ ++             ++ + CS  +      
Sbjct: 544 KLLDTIPSMISISDSKGRLVLSNQAYQASFRQCRENGCV-----DLESVCSFLHLSEREQ 598

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             F  II     E    +    +   ++L      +     +  F +++D  + E AL E
Sbjct: 599 AEFEEIIQVPASECGMGERFYHVTRKAILHDQ---MEMTHYLTLFSDISDLKQTELALRE 655

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            N A  +A E +N F+  VS+ELR+P+  ++G  ++L        NS+  Q ++    S+
Sbjct: 656 SNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEILSHRLS---NSESQQLLDNAICSA 712

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L   VNDILD + ++A  ++L+     + + L  V +S         ++  V      
Sbjct: 713 ERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPVLRSFEASAQLKGLQFDVHWQPTA 772

Query: 678 -GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  R+ QI S +LSNA+ F+  G  + +  A D       + + G  + E    
Sbjct: 773 YIDAQYDALRVNQIVSNLLSNAVKFTEVG-QIKVAIACDENALSIEIVDTGCGMTEAQLD 831

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            VF  FV       RR  G GLG+SIV+S ++L GG ++  S  E  T ++  IP K
Sbjct: 832 CVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMGGTIAFYSELEQGTKVSVWIPVK 888


>gi|254466327|ref|ZP_05079738.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
 gi|206687235|gb|EDZ47717.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
          Length = 515

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 155/379 (40%), Gaps = 15/379 (3%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            I  +  +    +    + K L   ++  +       + VW + + G++ W+N++Y   +
Sbjct: 122 WIDGVTRVQLRRSALEEQNKSLDQELTTLRAAVHQAPYPVWLQSEEGNVTWSNLAYDNLS 181

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
                  QK  G +   F + +   +       K     +   E      Y +       
Sbjct: 182 -------QKIRGRNAD-FADPLFTDLHDPMTSGKPERIFIPLPESKKKLWYNVSTTETEA 233

Query: 287 GEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
           G    A+DV+     E+   + +    +    L++ +AIFD+NR L   N   ++L  + 
Sbjct: 234 GWLCHAVDVNAVVDAEVAQRNFVQTLAKTFAQLSIGLAIFDRNRQLVLFNPVLIDLTALP 293

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTL 400
             FL++ P+     + LR    +PE  ++ +W+  +  + +++    +++TW LP+G   
Sbjct: 294 ANFLSSRPNLLTFFDRLRDQRMMPEPKSYSSWRHQMADLLEAAAEGRYQETWSLPSGSVY 353

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            V    +P G   ++FE++T +V L  ++ + +++    +D + E + VF  DG +   N
Sbjct: 354 KVSGRPHPDGAIAFLFEDITAEVTLTRQFRSELEMGQSILDQMDEAIGVFASDGTMTFCN 413

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A+ SLW+ +         I + +         +  W      +  +   R++    ++L
Sbjct: 414 TAYGSLWQMDPEASFAKVSIMDASRVWQNTAAPTPVWGEIRDFVAGYKG-REAWWSRVQL 472

Query: 521 LSDSVLEYSIIPLPNAQTM 539
              + L   +  + N  TM
Sbjct: 473 RDGTPLICKVSAIQNGATM 491


>gi|146301979|ref|YP_001196570.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146156397|gb|ABQ07251.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 653

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 13/242 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  + +    A   K SF+ ++S+E+R+PL  IIGFT+LL  +    L+ +Q  +++ +
Sbjct: 162 ELLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLSGT---PLDKQQQAFIQDV 218

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL +VNDILDL+ +++G + L      L   L  V   +  K  +  +   +  
Sbjct: 219 QTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKTAD-GVEFNLFL 277

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNG 727
           D +L   +  D+ RL QI   +  NA+ F+++G  V +         D+    FSVK+ G
Sbjct: 278 DAELPDVITGDQGRLNQIMVNLAGNALKFTNEGE-VTISVKNKGETEDSYTIRFSVKDTG 336

Query: 728 SSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP++  +S+F RF         +  G GLGLSIV+  + LH   + + S +   +   
Sbjct: 337 IGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGSEFF 396

Query: 786 CR 787
             
Sbjct: 397 FT 398


>gi|13641117|gb|AAK31604.1| RtpA-like protein [Pseudomonas synxantha]
          Length = 848

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 9/241 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+E+R+PL  I+GFT LL+ S+   L+ +Q  Y+  I
Sbjct: 169 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE---LSPRQLDYLGTI 225

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  L  ++N+I D + ++AG + L+     L DLL +     A   H   + +  ++
Sbjct: 226 EKSADNLXGIINEIXDFSKIEAGKLVLDSVPFNLRDLLQDTLTIFAPAAHAKQLELVSLV 285

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSS 729
                 + V D  RL QI + ++SNA+ F+ +G++          D+     SV++ G  
Sbjct: 286 YRDTPLALVGDPLRLKQILTNLISNAIKFTREGTSSPGDGRDEQEDSVQLRISVQDTGIG 345

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +     +++F  F    +    Q  G GLGL I +  I   GG + + S+    +     
Sbjct: 346 LSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWIS 405

Query: 788 I 788
           +
Sbjct: 406 L 406


>gi|302024080|ref|ZP_07249291.1| sensor histidine kinase [Streptococcus suis 05HAS68]
          Length = 449

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 139/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L               + ++S+GV      GRI + N   +        + 
Sbjct: 75  LNDLSEVIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSSQK- 133

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+  +     RY       DL A       D     +  L L ++     S   L 
Sbjct: 134 QEQYHLLEVLDLSDRY----TLRDLLAQTPEIVIDHTNENEEFLTLRANFATIRSESGLI 189

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   ++   ++T+  + ER               +  FV +VS+ELR+PLT++  + + L
Sbjct: 190 SG-LVVVLHDMTEQAKEERE--------------RRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    S    +V+     +  ++ ++ D+L L+ +D  + +++   I     +  +
Sbjct: 235 DEGAL--TESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFI 292

Query: 655 KQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   +   +    I             D  ++ Q+   IL+NA+ +S  G T+   
Sbjct: 293 LNRFDQMKNTDSDKVYTIVRDYQISPIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I SV + G  IP+     +F+RF          + G GLGL+I +  +  H 
Sbjct: 353 MKTTDSQLIVSVSDEGLGIPKTDLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGHGSTFTIVLP 432


>gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 948

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 190/487 (39%), Gaps = 45/487 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N        S + L       +   P   +   +        E +  K+
Sbjct: 239 SLPMGVTIIDENG------HSLISLTG-PDGIIKAEPRWMQERSWFGYTPGFRELVLKKS 291

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              +  S+  S               L+ I+ +   G  ++    +  +           
Sbjct: 292 LPPSSLSIVYSV-PVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ 350

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 351 RLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQII 406

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I  L +  T        
Sbjct: 407 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST-------- 448

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 449 -RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 504

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 505 ERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 565 LGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRD 623

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 624 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 683

Query: 784 INCRIPS 790
              RIP 
Sbjct: 684 FTLRIPL 690


>gi|158520998|ref|YP_001528868.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
            Hxd3]
 gi|158509824|gb|ABW66791.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
            Hxd3]
          Length = 1791

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+ ++S+E+R+P+  +IG T          L  +Q +Y E + +S+  LL ++ND+LD 
Sbjct: 1421 EFLANMSHEIRTPMNGVIGMT---DLLLDTDLTEEQLEYAESVRSSAESLLVIINDVLDF 1477

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
            + ++AG +KL      L  LL EV  ++A +     IR  VI   ++ S +  D  RL Q
Sbjct: 1478 SKIEAGKLKLEEIDFDLEKLLKEVNDTMAPRARRKRIRHDVILKEEVPSLLKGDPVRLRQ 1537

Query: 690  IFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRF--V 743
            I   +  NA+ F+  GS  V + A          +F V + G  I  +  +++F  F  V
Sbjct: 1538 ILFNLCENAVKFTEAGSVKVAVSAPHQTDTTATLLFEVTDTGIGIAPEHHQAIFESFSQV 1597

Query: 744  SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +   Q  G GLGL+I +  ++L  G + ++S     +T    +
Sbjct: 1598 DASTTRQYGGTGLGLAITKRLVSLLDGEIGVTSEPGKGSTFWFTL 1642



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/456 (13%), Positives = 143/456 (31%), Gaps = 60/456 (13%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
            + G+   + E       +     ++++L D++  ++   D             ++     
Sbjct: 665  VAGVARNITERKTAEAAIREREKLYRLLADNITEMISIIDIETQKHLYISPSVEHVRGFT 724

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALE-----KNFCETVSTLE--------HGNNKSY 277
            +  +  +    ++F  E  +  +++ A E     K   +    +          G+    
Sbjct: 725  VE-EVLVQPFDRIFTSESYRLAMATLAEEIEKDGKPGVDPDRAVTLELEQFRKDGSTIWT 783

Query: 278  KIVRV------LNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRY 327
            ++V                 A D+S+     + +  + E       N++  I I D + +
Sbjct: 784  EVVVTFLRDASGRPASMLAAARDISERKRAENAIRKSEERYRMLAENISEVIYILDSDTF 843

Query: 328  L-QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
              ++   S  +L  +        P          +    PE L  K  +     + +   
Sbjct: 844  TFRYVTPSVEKLHGLSPEVFMKLPL---------ARVLTPETLA-KVTRTIQTELAQDGS 893

Query: 387  THKD---------TWHLPNGQTLHVIVTSN---PRGG----TIWMFENLTVQVDLETKYN 430
               D           +  +G T+ V  T+       G     + +  +++ +   ET   
Sbjct: 894  PGLDPDRFVSLDMEAYRADGSTVWVENTARFLRDDNGRPVSILGVARDISERKRAETAIR 953

Query: 431  TLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +      +++SE +        +   ++P+ + ++             + I      
Sbjct: 954  KSEERYRMLAENISEAIFTIDLATLKHTYASPSVKQMYGFTPEEFIARPIEQVIVPKSLD 1013

Query: 490  YYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDS--VLEYSIIPLPNAQT-----MLT 541
                +   +L        D +R  +L+  L     S   +E S   L NA       +  
Sbjct: 1014 RLIVAVAAELDKDGKPGVDPDRNVTLELELYRKDGSSVWVEASAKALRNADGELVAALGV 1073

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              ++++  +AE+AL E  E  R   E  N  +  +S
Sbjct: 1074 ARDISERRKAEQALRESEEKFRTLVEKTNELIFSMS 1109



 Score = 57.6 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 81/578 (14%), Positives = 191/578 (33%), Gaps = 66/578 (11%)

Query: 57  ETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIG-QLHQRIDIPQTDTDLLSF 115
                 +E   Q S Y  L    + +  + D KD +   +   + +       +    S 
Sbjct: 269 ALKKRDTEFRQQESLYRLLAENTSEIVSIIDLKDLSHRYLSPSVEKIRGFTLEEAMGHSL 328

Query: 116 ENWLKFHHY-IKLSKATEKLRKEGQSFDLVAETQNDCAIKI-----EGRVSGSCAFLRIL 169
           +  L    + + ++  TE+L ++GQ      +      +++     +G    +      L
Sbjct: 329 DQVLAPASHELAITAITEELARDGQP---GVDPDRHRVLELEQLRKDGSTVWTELVASFL 385

Query: 170 --------SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-DILWANI 220
                   S+     ++ E       +    + ++++ +++  +++  D       +A+ 
Sbjct: 386 RDTEGKPTSILTAARDITERKKAEAAIRESETRYRMVAENIGEVIYIFDLNALRYTYASP 445

Query: 221 SYKKN----------TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL- 269
           S +               + +    +I    +  ++E+          +++    +    
Sbjct: 446 SVRHTYGYTVEESLSLPIDKVFTPDSINRILETIEKELALEGKPGVDPDRHVTLELEQYH 505

Query: 270 EHGNNKSYKIV------RVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAI 319
           ++G+    +                 G++ D+++    E  +         +  N++  I
Sbjct: 506 KNGSVLWIETTVKGLRDETGRLVSVVGVSRDITERKKAEAAIRQSEARYRLLAENISEII 565

Query: 320 AIFDQNR-YLQFHNRSF--------VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            IFD  R    + + S          EL  I L  L T  S D ++E L        Q N
Sbjct: 566 YIFDITRLQYAYVSPSVSTVCGYTPEELLTIPLDTLVTPSSFDRVVERLTEEL----QKN 621

Query: 371 WKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIV--TSNPRGGTIWMFENLTVQVDLET 427
            K+  +   +V    E  HKD   L    T+  +   T +P G    +  N+T +   E 
Sbjct: 622 GKSGVDPDRAVTLELEVYHKDGSLLWMETTVKAVRDETGHP-GLVAGVARNITERKTAEA 680

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                 K+     D+++E +++   +  +    +P+   +       +      R   + 
Sbjct: 681 AIREREKLYRLLADNITEMISIIDIETQKHLYISPSVEHVRGFTVEEVLVQPFDRIFTSE 740

Query: 487 CSRYYNESDGWDLFAAIITSFDDERK---SLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             R    +   ++        D +R     L+   +  S    E  +  L +A      +
Sbjct: 741 SYRLAMATLAEEIEKDGKPGVDPDRAVTLELEQFRKDGSTIWTEVVVTFLRDASGRPASM 800

Query: 544 -----NVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                ++++  RAE A+ +  E  R   E  +  +  +
Sbjct: 801 LAAARDISERKRAENAIRKSEERYRMLAENISEVIYIL 838



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/423 (15%), Positives = 140/423 (33%), Gaps = 46/423 (10%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGIVFQKA 236
           T + ++L      + +L + +  +++  D      + + S +        E   + F K 
Sbjct: 17  TARIQELLRTEEHYHLLANHIHEVIFTMDMDFKYTYISPSVEHQRGFTVEEAIHLPFDKN 76

Query: 237 IGE-SRKLFKEEIKKRMISSSALEKNFCETVSTLE----HGNNKSYKIV------RVLNS 285
           +   S +   + + + + ++            T+E     G+ +  ++       +  N 
Sbjct: 77  VTPASVEKIIDLVTRGISANREGRGPTPPQTITIEVYCKDGSTRWSELTGDFLYDKNGNP 136

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            G  G++  V     V ++L    + +   + AI     +R+  +HN++F  L+  D   
Sbjct: 137 TGLIGVSRYVDDREEVREELIRFKQAIDGTSEAIGFSTPSRHHVYHNKAFARLFGYDT-- 194

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQ---TL 400
               P + E      +  K P         E++FS   S      +      NG+    L
Sbjct: 195 ----PEDLETAGGPVTRFKDP------RTAEDLFSTIVSGRPWSGEVVMIDRNGREFIAL 244

Query: 401 HVIVTSNPRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGR 455
           H       R G I +      +++     +T++     +     ++ SE V++    D  
Sbjct: 245 HRADAIRDRNGEITLLMGSIIDISALKKRDTEFRQQESLYRLLAENTSEIVSIIDLKDLS 304

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            +  +P+   +        + G  +  + A  S     +   +  A       D  +   
Sbjct: 305 HRYLSPSVEKIRGFTLEE-AMGHSLDQVLAPASHELAITAITEELARDGQPGVDPDRHRV 363

Query: 516 GTLELL----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
             LE L    S    E     L + +   T +        ER    K EA  +  E +  
Sbjct: 364 LELEQLRKDGSTVWTELVASFLRDTEGKPTSILTAARDITERK---KAEAAIRESETRYR 420

Query: 572 FVQ 574
            V 
Sbjct: 421 MVA 423



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 104/316 (32%), Gaps = 41/316 (12%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETE 229
           L G   +++    +  +     S++++L ++   +V   D +     + + S +K     
Sbjct: 260 LMGSIIDISALKKRDTEFRQQESLYRLLAENTSEIVSIIDLKDLSHRYLSPSVEK---IR 316

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
           G   ++A+G S           +  ++  E+   +    ++   ++  ++ ++       
Sbjct: 317 GFTLEEAMGHSLDQVLAPASHELAITAITEELARDGQPGVDPDRHRVLELEQLRKDGSTV 376

Query: 290 --------------------GIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQN 325
                                 A D+++    E  + +  T    +  N+   I IFD N
Sbjct: 377 WTELVASFLRDTEGKPTSILTAARDITERKKAEAAIRESETRYRMVAENIGEVIYIFDLN 436

Query: 326 R-YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY-- 382
                + + S    +   +    + P +        S N++ E +  +   E    V   
Sbjct: 437 ALRYTYASPSVRHTYGYTVEESLSLPIDKVFTP--DSINRILETIEKELALEGKPGVDPD 494

Query: 383 KSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
           +      + +H  NG  L +  T       +      + +  ++T +   E         
Sbjct: 495 RHVTLELEQYH-KNGSVLWIETTVKGLRDETGRLVSVVGVSRDITERKKAEAAIRQSEAR 553

Query: 436 QGETIDHLSEGVAVFG 451
                +++SE + +F 
Sbjct: 554 YRLLAENISEIIYIFD 569


>gi|108758870|ref|YP_628999.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|58803053|gb|AAW82652.1| RodK [Myxococcus xanthus DK 1622]
 gi|108462750|gb|ABF87935.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 981

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 96/511 (18%), Positives = 190/511 (37%), Gaps = 79/511 (15%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAI--AIF--DQN-RYLQFHNRSFVELWEIDLAF 345
           +  D  +      QL  T  ++ N+  AI   +F  D + R L   N++F + + +   +
Sbjct: 131 MTADRRRHTATAVQLERTNYLMENIIDAIPFVLFVKDADTRRLVVANKTFADAFRVTKEW 190

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIV 404
           L     +D            P++   +++      + ++ +    +     +G       
Sbjct: 191 LLGKLDHDYF----------PKE-QAESFIAIDTEILETKQMKSFEEVARADGVDRIFAT 239

Query: 405 TSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
              P     G       +T  +     +  +++                     ++ +N 
Sbjct: 240 RKLPLLDEHGVARYVMGVTEDITERKHHEEMLRASKA----------------ELEAANK 283

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
              +              I+   A  +R         L   II   +++   L   L + 
Sbjct: 284 QLAA----------SLEEIKRTRAVSARSLASYQQRALQMEIIRQQNEDLDRLAQELAV- 332

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                                        A+R   E+      A  +K+ F+ + S+E+R
Sbjct: 333 -----------------------------AKRNEEERAREAEAAARLKSEFLANFSHEIR 363

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG+ DLL   +   L +   + +  +  ++  LL L+NDILDL+ +++G +++ 
Sbjct: 364 TPLNGIIGYCDLLMREEGQRLTAHGRRDLNVVKTNAKTLLALINDILDLSKIESGRVEVV 423

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + + +L  E   ++   +   ++ +    D       +D  +L QI   +LSNA  F
Sbjct: 424 TEQVDVQELAEECLATVKEYLKGKDVALTTNIDPSARMLRSDALKLRQIMLNLLSNAAKF 483

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           +  G  V L       + I +V++ G  IP D    +F +F        R   G GLGL+
Sbjct: 484 TDAGE-VALSLVPAGSEVIMTVEDTGVGIPSDELPFIFEKFRQVDGSTTRKVGGTGLGLA 542

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           IV     + GG+V+++S+    TT   R+P+
Sbjct: 543 IVRELSRVLGGNVTVTSTLGRGTTFTVRLPT 573


>gi|29346064|ref|NP_809567.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337958|gb|AAO75761.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 660

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 7/243 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL    E   +A+++K++FV ++S+E+R+PL  I+GF+ LL  +       +Q +Y +
Sbjct: 417 EIALRHAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTV--ETTDEQKEYAD 474

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +S +LL L++D+LD++ +++G +   Y    L +    +  ++  K    +I +++
Sbjct: 475 IIQTNSELLLQLISDVLDVSRLESGKLLFKYEWCELVNHCQNMI-TLTRKNRTRDIDVRL 533

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSS 729
               +      D  RL Q+   +L+NA+ F+  G ++ L    D  D   +FSV + G+ 
Sbjct: 534 QMPKEPYMLYTDPLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTGAG 593

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IPED  + VF RF       Q  G GLGL+I +  I   GG + I  + +         P
Sbjct: 594 IPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQRMGGDIWIDKNYKNGARFVFSHP 651

Query: 790 SKE 792
            K+
Sbjct: 652 IKK 654


>gi|313639666|gb|EFS04457.1| sensor protein kinase WalK [Listeria seeligeri FSL S4-171]
          Length = 610

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++     ++      ++    +  S   +R +      L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDKF-----QFEDLMEVDGSLTMDRSTSDKPYILRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDX-XXMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   ++F+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKYEDEIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKSKGTIIKFTLP 600


>gi|212212885|ref|YP_002303821.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212011295|gb|ACJ18676.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 630

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 96/428 (22%), Positives = 185/428 (43%), Gaps = 37/428 (8%)

Query: 387 THKDTWHLP--------NGQTLHVIVTSNP----RGGTIWMFENLTVQVDLETKYNTLVK 434
             ++ W LP        + + +   V S P    + G +   + ++  V+    +     
Sbjct: 69  AVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYMLTGQVISKSVNASQIF----- 123

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                + ++ + +     +      N  F  L   E      G    ++    S+  N  
Sbjct: 124 -LENILYNIPQYILWKDRNFVYLGCNHNFAKLVGFETPESIIGKTDFDL--WRSQGANSI 180

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSV 549
              D+         D  +SL   L    + V   S +PL + +      ++   ++T+  
Sbjct: 181 RPTDVEVLEGKQLVDVEQSLS--LPNGKEGVFLISKVPLRDERNEIIGILVVGTDITERK 238

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E+ L E       +D  K+ F+ ++S++LR+P+  I+G   +    +      KQ   
Sbjct: 239 QNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEH---TKKQEPL 295

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +SAS+ +LL LV DILD A ++ G ++L YST  L  L+  + ++ + +  +  I+I
Sbjct: 296 INDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQQKQIKI 355

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKN 725
            V  D  L  S V++   + +IF  ++ NA+ F+ KG  + +    +          VK+
Sbjct: 356 NVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKG-QIDVTVNLEGNKPAMLKILVKD 414

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP+D   ++F+RF      +  +  G+GLGLSI++  ++  GG V +SS +   +T
Sbjct: 415 TGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSIENEGST 474

Query: 784 INCRIPSK 791
               IP +
Sbjct: 475 FTLTIPCE 482


>gi|312881159|ref|ZP_07740957.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309371051|gb|EFP98505.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 731

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+    + + + K++F+  +S+E+R+P+  ++G   +L+ +++     +Q +Y++ + 
Sbjct: 339 LEEEKVKAQASTKAKSAFLAVLSHEIRTPMNGVLGTAQILQKTEM---TDEQRKYLKTLI 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + V+ G ++L +    L  +L  +     T   E  ++ KV SD
Sbjct: 396 DSGEHMMTLLNEILDFSKVEQGHLELEHKPFPLESVLGSINSVYNTLCCEKGLQFKVYSD 455

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKNNGSSI 730
             +  +   D+ RL QI   +L+NA+ F+S+G   +        D       V++ G  I
Sbjct: 456 VPIERWYRFDKARLRQILFNLLNNAVKFTSRGYVEVSFTEEIIDDQTYLRLRVRDTGIGI 515

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P++  + VF  F        RR  G GLGL+IV     L GG + ++S     +      
Sbjct: 516 PKEAREKVFKPFEQAESSTTRRFGGTGLGLAIVNQLCELMGGKIQLTSEVGIGSCFEISF 575


>gi|254250800|ref|ZP_04944119.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124879934|gb|EAY67290.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 1468

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/504 (16%), Positives = 182/504 (36%), Gaps = 17/504 (3%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            ++           + I+ +  +A    D+   ++    +   ++ +    L        L
Sbjct: 835  ARIEDTAKANDDLHNIIASSEIATVFVDKEIRVKRFTPNATAIFNLIDTDLG-----RSL 889

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                 +        + +   +++  + +  E+    W+L   + L      +   G +  
Sbjct: 890  FHITHALRYPTLADDVRQSFQSLRLIEREIESEAGRWYLM--RLLPYRTADDHIDGAVIT 947

Query: 416  FENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              ++T +   E       +          +  + +    G I   N     ++   E  +
Sbjct: 948  LIDITDRHHAEEAARAGEQRLRLVAQSTKDYAIIIQDGHGAIVSWNAGAERIFGYTEEEM 1007

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIP 532
              G  +  I     R           A      DDER  ++  G     S  V   S   
Sbjct: 1008 -IGQDVELIYEPNDRQALVPMREREVATREGRADDERWHRTKDGRRIFCSGVVTPISDTS 1066

Query: 533  LPNAQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                  ++  +     +   +  A        E    ++++K+ F+  +S+ELR PL  I
Sbjct: 1067 FNGFAKIVRDMTLRKQSDDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLI 1126

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
               +++L             +  + I  +      +++D+LDL+ +  G + L  + + L
Sbjct: 1127 GVKSEMLPRLPETRDIPAVREAADSIRQAVRAQAQIIDDLLDLSRIQTGKLALELNRVDL 1186

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              +L  +  +    +H   + +K     +    +AD  R  QIF  ++SNA+ ++     
Sbjct: 1187 TAMLRSIADTCERDVHARGLVLKTELPTEPAIALADPVRCEQIFWNLMSNALKYTQSHGE 1246

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            ++++ A +       V ++G  I  D    VF+ F        R G+G+GL++V   +++
Sbjct: 1247 IVVRLAHEGRMLRVDVVDDGQGIDGDTLPHVFDMFRQAPRDRTRGGLGIGLALVRQLVDM 1306

Query: 768  HGGHVSISSS-DEGVTTINCRIPS 790
            HGG ++ +S      TT+   +P+
Sbjct: 1307 HGGRIAAASDGPGAGTTMTVWLPA 1330


>gi|301310625|ref|ZP_07216564.1| probable hybrid sensory kinase [Bacteroides sp. 20_3]
 gi|300832199|gb|EFK62830.1| probable hybrid sensory kinase [Bacteroides sp. 20_3]
          Length = 793

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 186/497 (37%), Gaps = 40/497 (8%)

Query: 321 IFDQNRYLQFHNRSFVELWEID----LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           + D++  L + N  + ++         A     P       +  + N L + +      E
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEEYEALFHNKPDLY-FKGYDEAWNILSKNV-----YE 78

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR--GGTIWMFENLTVQVDLETKYNTLVK 434
            I +     ET          +   +  T   +   G    +  +T   D+  +      
Sbjct: 79  TIANKASGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIE--- 135

Query: 435 VQGETIDHLSEGVAV---FGPDG--RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            Q  T D++  G         DG   +  +N  +      ++N     +    +  T   
Sbjct: 136 -QTITYDNIP-GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSRN 193

Query: 490 YYNESDGWDLFAA----IITSFD----DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             N      L       +I S D    D    L G           Y I+ +        
Sbjct: 194 TMNAHISCMLKGEPVHFVIQSKDKNGNDAWLQLNGECIGWEGDEPIYLIVYINITDITEQ 253

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                   +  + L E  ++  +A++ K+ F+  +S+++R+P+  I+G   + K      
Sbjct: 254 RELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHV--D 311

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + +    +E I+ +S +LL+L+N++LD++ +++G + L+     + +LL ++   +  +
Sbjct: 312 EHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQPE 371

Query: 662 MHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---- 716
           +      + +   + +  +   D QR+ Q+   ILSNA+ ++ +   + ++         
Sbjct: 372 IKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKAPHNG 431

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
            G++ F  ++NG  +  +    +F  F   +     + +G GLG+SI    I + GG + 
Sbjct: 432 IGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMGGDIK 491

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +     +P 
Sbjct: 492 VESEYGKGSRFTIDMPL 508



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 60/400 (15%), Positives = 123/400 (30%), Gaps = 34/400 (8%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR--------MISSSALE 259
             D+   +LWAN  Y          ++        L+ +   +           + +   
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEEYEALFHNKPDLYFKGYDEAWNILSKNVYETIANKA 84

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE---ILHNLT 316
             +   +        +  KI        + GI I  +    V D +    E      N+ 
Sbjct: 85  SGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQTITYDNIP 144

Query: 317 VAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             I+      D +  L   N  +++   ID     +      L E  R  N +   ++  
Sbjct: 145 GFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSR--NTMNAHISCM 202

Query: 373 TWKENIFSVYKSSETH-KDTWHLPNGQTLHVIVTSNPRGGTIWM-FENLTVQVDLETKYN 430
              E +  V +S + +  D W   NG+ +       P    +++   ++T Q +L+ K  
Sbjct: 203 LKGEPVHFVIQSKDKNGNDAWLQLNGECIGWEGDE-PIYLIVYINITDITEQRELQKKLE 261

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              K   E +    +       D   ++S+     +            H+          
Sbjct: 262 KQSKQLKEALKSAEQANQA-KSDFLARMSHDIRTPMNAIMGMATIAKAHVDEHERILDCM 320

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
              +    L  ++I    D  K   G L L  D   E+++  L     +   +   +   
Sbjct: 321 EKINGASKLLLSLINEVLDMSKIESGRLILSED---EFNVGELLQDLVV---MMQPEIKN 374

Query: 551 AERALTEKNEALRKAD------EIKNSFVQHVSYELR-SP 583
            ++ L    + LR  +       IK   +  +S  ++ +P
Sbjct: 375 KQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTP 414


>gi|284035528|ref|YP_003385458.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814821|gb|ADB36659.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 752

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/704 (14%), Positives = 242/704 (34%), Gaps = 42/704 (5%)

Query: 114 SFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILS--- 170
            F +WL     + L    + L  +     L  +  +    K+          + +L    
Sbjct: 55  CFSSWLGMPSSLLLEPLWQTLEADLVG-CLHYQLASGKLGKVTVTPLPGRYLVELLEETP 113

Query: 171 ---LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
               DG  ++          L       K  FD    +    +  G     N ++ +   
Sbjct: 114 PILDDGDATDAIVLRTVEDYLQQKNRELKTFFDGALDMHSISNSQGRFFEVNHAFYQTLG 173

Query: 228 TEGIVFQKAI-------GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
                 ++          E   +++  ++  +      + N        + G  + ++  
Sbjct: 174 YSPDELKQIPFLNLIHPDEQSWVYENLLRNILHHPVRNQVNRLRR----KDGTYRVFEWN 229

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA---IFDQN--RYLQFHNRSF 335
            +       G A D+++     +QL   +E L  L    A   I++ N  +     +   
Sbjct: 230 AIGIDEVVYGSARDITEREQAQEQLHALHERL-QLATQAAGQGIWENNLEKNEIIWDDRL 288

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            E+  +  +      S  + L+ +   ++      +   ++   +            H P
Sbjct: 289 WEIHGLPPS--KHKRSYADYLQTIHPDDR----AAFLAKRQLELAGTDDRLEAIYRIHWP 342

Query: 396 NGQTLHVIVTSN----PRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           +G T  +         P G     I +  ++T ++  +       +   +  DH+ E   
Sbjct: 343 DGTTRWIETNGRIFRYPDGRPRRLIGVAWDITPRMLADAALRDSEQRFRQIADHVDEVFW 402

Query: 449 VFGPD-GRIKLSNPAFRSLW-KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +       +   NPA+  +W ++ E+         +      +   ++   D  A     
Sbjct: 403 IHSAQPFELLYINPAYERVWQRSCESIYEDPMSFMDGIVEEDKPAMQAFFQDYRAGKEGQ 462

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            D + +   G+   +S              + +    +++     E  L +     ++  
Sbjct: 463 MDYQLERPDGSRCWVSVRSFIVRDAAGHIIRHLGVVTDISSQKEKELVLQQALLRTQELS 522

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVN 625
           ++K+ FV  VS+E R+PL  +    +L+      +      S+++  I      + +L++
Sbjct: 523 QLKSQFVATVSHEFRTPLATMQSSLELINYHLASAATPVPISKHLRVIEQEIEKVTDLLS 582

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D L  + +++G +++N     L  L  E+  +  ++  ++  R   + +G      +D +
Sbjct: 583 DFLSASALESGNIRVNARWFDLVALCEELLSTHFSR-RQDQRRTHFLVEGTACQLYSDPR 641

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            +  +   +L+NA  FS+      L+      + +  V + G  IP     ++F  F   
Sbjct: 642 LVEHVLINLLANAFKFSTTDPP-TLRIEFKPSEVVVYVIDQGIGIPLSEQGNLFQAFFRA 700

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ G  RG GLGL I   F+    GH+ + S +   +T    +P
Sbjct: 701 SNAGAIRGTGLGLVIARQFVEHLCGHLGVESQEHKGSTFTMTLP 744


>gi|170695068|ref|ZP_02886216.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170139920|gb|EDT08100.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 933

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/397 (21%), Positives = 158/397 (39%), Gaps = 35/397 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPG 477
           +  +   E             ++++ + + V      R    N A   L      ++   
Sbjct: 311 IVERQRAEQVARASEHFLDSIVENIPDTIFVKDAATLRFVRINKAGEQLLGYGREQIIGK 370

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNA 536
           +      A  + ++   D   L +  +    +E       +E +    L +++ IP+ + 
Sbjct: 371 SVHDMFPAQEAEFFALKDRDVLKSHQMVDVPEE------PVETIHGQRLLHTMKIPIVDE 424

Query: 537 QT-----MLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSFV 573
           +      +    ++T   RAE  L    E L                     ++ K +F+
Sbjct: 425 RGEPQFLLGISRDITGQRRAEEELRRYREHLEDMIRERTAELAVAKERADAANQAKGAFL 484

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            H+S+ELR+PL  I+G+  +LK  K  +L+ +    +  I  S   LL ++NDILD+A +
Sbjct: 485 AHMSHELRTPLNGILGYAQILKCDK--NLDRRHVDGITVIQRSGEHLLAIINDILDMAKM 542

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFS 692
           +AG  +L  S + L   +  + ++I  K  E  +         L +    D +RL Q+  
Sbjct: 543 EAGKAELTLSDVPLEGFIYFIAETIRVKAMEKGLAFACELAPNLPAAVRVDEKRLRQVLL 602

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQR 751
            +LSNA+ F+  GS  +           F V++ G  I E    ++F  F   +  R Q 
Sbjct: 603 NLLSNAIKFTETGSVRLRVGWMPPARLSFEVRDTGIGIHEARLGAIFRPFEQVSDARHQI 662

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+I    + L GG + + S     +  +  +
Sbjct: 663 GGTGLGLTISRQLLRLMGGEIRVDSRHGAGSAFSFEL 699


>gi|194366814|ref|YP_002029424.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
 gi|194349618|gb|ACF52741.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
          Length = 1181

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 9/249 (3%)

Query: 548  SVRAERALTEKNEALRKA-DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              R +  LT   + L +   + K+ F+  + +E+R+P+T ++G ++LL  +    L+  Q
Sbjct: 792  RRRQQWQLTVHKQQLAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLAT---PLDPVQ 848

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  + + LL LVND LDLA ++AG ++L+     L  LL++V+  +     +  
Sbjct: 849  RSYAGSIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQALMQPMARQRQ 908

Query: 667  IRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVK 724
            +  +   D     S   D  R+ QI   +L NA+ F+ +G   + ++   +     F V 
Sbjct: 909  LAFQRGDDPPGPISVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLDDNGAGLCFEVH 968

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++G  I  +  + +F+RF             G GLGL+I +      GG + + S     
Sbjct: 969  DSGPGINAEQQERLFHRFEQAEGPRTASRYGGSGLGLAICQELAVAMGGRIEVDSQPGKG 1028

Query: 782  TTINCRIPS 790
                 R+P 
Sbjct: 1029 ARFQVRLPL 1037


>gi|16127332|ref|NP_421896.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|13424758|gb|AAK25064.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
          Length = 560

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 6/226 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K++F+  +S+ELR+P+  ++G    L+ +K   L+++QS+Y+E I  S   L+ ++N
Sbjct: 183 SRAKSAFLAMMSHELRTPMNGVLGLAHALRGTK---LDAQQSEYLEMIEQSGHGLMTILN 239

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684
           DILDL+ ++AG + L  +   L  L  + +   +       + + + +S         D 
Sbjct: 240 DILDLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESARLKGLDLILEVSPSAPPWVSGDA 299

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            R+ QI   ++SNA+ F+  G  VI       G    SV + G  +  +    +F  F  
Sbjct: 300 TRVRQILMNLVSNALKFTESGRVVIRLGGEAGGVVTLSVTDTGVGMTAEQIGRLFTPFAQ 359

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 RR  G GLGLSI      L  G + +SS     +T   R+
Sbjct: 360 GDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPGVGSTFTVRL 405


>gi|261250458|ref|ZP_05943033.1| sensor histidine kinase [Vibrio orientalis CIP 102891]
 gi|260939027|gb|EEX95014.1| sensor histidine kinase [Vibrio orientalis CIP 102891]
          Length = 1142

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 168/413 (40%), Gaps = 32/413 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +  L+      +  G  I ++    +       G          F  E+ +   +  + 
Sbjct: 656  RYLELFTFPAGLIQVGRPIADVIRHNAEQGLCGPGDPEQHVRRRVFHLEQGTRHTSSRVR 715

Query: 522  SD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
             D  V+E    P+P    +++F ++T    AE+AL + NE+L +                
Sbjct: 716  PDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANESLEERVQERTQELEQLNKKL 775

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                       + K+ F+  VS++L  PL     F   L          + S ++E    
Sbjct: 776  VSATQRSEHESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDDETKQLSHHIESALG 835

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L+ D+LD++ +++G + +N     +ND+L  +    +    +  I  K+I   
Sbjct: 836  AAE---DLIGDLLDISRLESGKLDINVHGFAINDVLANLNAEFSALAKQQGIEFKMI--P 890

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
             L    +D + L ++    L+NA  +S KG  V+L   R        V +NG  I ED  
Sbjct: 891  SLLLVQSDPKLLRRVVQNFLTNAFRYSPKG-KVVLGVRRVGSQARIDVWDNGMGIDEDKQ 949

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F         +G+GLGL+I +   ++ G  +++ S     +  +  +
Sbjct: 950  QEIFEEFKRGTQVRSDQGLGLGLAISKGIAHVLGHQITMRSWPGQGSVFSITL 1002



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 81/228 (35%), Gaps = 15/228 (6%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFTFPAGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++               +  +  +F   +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCGPGDPEQHVRRRVF-HLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             F ++TV  D E       +   E +   ++          ++  N    S  +  E+ 
Sbjct: 735 MSFTDITVFRDAEQALKDANESLEERVQERTQ---------ELEQLNKKLVSATQRSEHE 785

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIIT--SFDDERKSLQGTLE 519
               +  R +AA         +   LFA+ ++  + DDE K L   +E
Sbjct: 786 SQSKS--RFLAAVSHDLMQPLNAARLFASSLSEVAKDDETKQLSHHIE 831


>gi|258510676|ref|YP_003184110.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
 gi|257477402|gb|ACV57721.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
          Length = 1215

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 102/524 (19%), Positives = 201/524 (38%), Gaps = 56/524 (10%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL------QFHNR--SFVELWEIDLAFLA 347
             + +  N++L  T E LH++   +   +    L      +  N   +F+   EI   FL 
Sbjct: 698  EEIVAANEELQSTNEELHSVNEELLTINAEYQLNIQQLTELTNDLDNFLASTEIGTLFLE 757

Query: 348  TNPSNDEL------------LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
                                ++  R    +  +L +    ++  SV  + E  +   H  
Sbjct: 758  RELKVKRFTPALTKEFHLLDIDVGRPITHISHRLEYDEMIDDAKSVLANGEPIEREVHSK 817

Query: 396  NGQTLHVIVTS--NPR---GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            +G    V V     P     G ++ F ++T    +  +   L       ++     V + 
Sbjct: 818  SGAWYAVRVLPYHTPEQAVKGVVFTFVDITKIKKMNEELRKL----SYAVEQSPSIVVIT 873

Query: 451  GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDD 509
              +GRI+  NP F +   +     + G H+R++     +  +  D W +L A    + + 
Sbjct: 874  DTEGRIEYVNPKFCACTGSSVEE-ALGRHLRDLNEWAEQNLSFDDVWSNLQAGERWTGEV 932

Query: 510  ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
              +   GTL        + SI+P+ +    +           E       E L +  E+ 
Sbjct: 933  PSRRKDGTLY-----WEQLSIVPILDETGRIIHYLKVAEDVTE---FRYTEELLRKSEML 984

Query: 570  N---SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +        +++E+R+PLT + GFT L+ +            Y+E +      +  +VN+
Sbjct: 985  SAVGELAAGIAHEIRNPLTALKGFTKLILSGSHSD------SYLEIMRGELDRIETIVNE 1038

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +L L+   A    ++       D+L +V   + T+    ++ I++    +    +    +
Sbjct: 1039 LLVLSKPQA----VHIQRRNFADILRDVVMLLETQALLTHVDIELRIPDEPIEILCVENQ 1094

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            L Q+F  +L NA++    G T+ +   RD    +  V++ G  IP+D  K +   F    
Sbjct: 1095 LKQVFINLLKNAIEAMPNGGTIEVTVERDGDHVVIRVRDEGVGIPQDKMKKLGEPFY--- 1151

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               + +G GLGL +    +  HGG +   S +   TT+  R+P 
Sbjct: 1152 -TTKDKGTGLGLMVSFKIVEQHGGIIRYESKEGEGTTVTVRLPL 1194



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 98/286 (34%), Gaps = 34/286 (11%)

Query: 293  IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +D++K   +N++L      +      + I D    +++ N  F       +         
Sbjct: 844  VDITKIKKMNEELRKLSYAVEQSPSIVVITDTEGRIEYVNPKFCACTGSSVE-------- 895

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLHVIVTSNP-- 408
            + L   LR  N+  EQ       ++++S  ++ E  T +      +G      ++  P  
Sbjct: 896  EALGRHLRDLNEWAEQ---NLSFDDVWSNLQAGERWTGEVPSRRKDGTLYWEQLSIVPIL 952

Query: 409  -RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
               G I  +  +   V  E +Y   +  + E +  + E  A    + R    NP   +  
Sbjct: 953  DETGRIIHYLKVAEDVT-EFRYTEELLRKSEMLSAVGELAAGIAHEIR----NP--LTAL 1005

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
            K     +  G+H  +               D    I+       K     ++  + + + 
Sbjct: 1006 KGFTKLILSGSHSDSYLEIMRGEL------DRIETIVNELLVLSKPQAVHIQRRNFADIL 1059

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
              ++ L   Q +LT V++       R   E  E L   +++K  F+
Sbjct: 1060 RDVVMLLETQALLTHVDIE-----LRIPDEPIEILCVENQLKQVFI 1100


>gi|209515313|ref|ZP_03264180.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209504294|gb|EEA04283.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 721

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 123/259 (47%), Gaps = 12/259 (4%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + +F ++T     ER L E   A   A++ K++F+  +S+E+R+PL  I+G  +LL  S 
Sbjct: 206 LCSFSDITTLKNTERKLDEARAAADAANQAKSAFLAMMSHEIRTPLNAILGNLELLGRSP 265

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           L  L   Q + +  +++SST LL ++NDILD + V++G M L   +  L  ++ +V    
Sbjct: 266 LSPL---QEERLGVVTSSSTALLGIINDILDFSKVESGQMTLESISFDLGHVIRQVGAMF 322

Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
               H   +    + D  L   ++ D  R+ QI   ++SNA+ F++ G  V+L+    + 
Sbjct: 323 EPVAHAKGLEFDCVIDDALAPHYLGDPTRIRQIAVNLVSNAIKFTATGD-VLLEVYLKDD 381

Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
                  +  V + G  +     +++F+ F         +  G GLGL++      L  G
Sbjct: 382 TAEDSPIVIGVSDTGIGMTLQQQETLFHAFTQADSSIARRYGGTGLGLALCLRLTELMHG 441

Query: 771 HVSISSSDEGVTTINCRIP 789
            + + S     +T    +P
Sbjct: 442 TIQVKSELNAGSTFIVTLP 460


>gi|116250541|ref|YP_766379.1| two-component regulator sensor histidine kinase protein [Rhizobium
            leguminosarum bv. viciae 3841]
 gi|115255189|emb|CAK06263.1| putative two-component regulator sensor histidine kinase protein
            [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1310

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 128/738 (17%), Positives = 255/738 (34%), Gaps = 72/738 (9%)

Query: 98   QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKA--TEKLRKEGQSFDLVAETQNDCAIKI 155
            ++       +T     + E          +S A    +L +E  +  +  ET N      
Sbjct: 596  EISTEQAAIETPAQESAAEKAEGSADAGDVSAAEPVAELPQEPPALRIS-ETPNRRFSDK 654

Query: 156  EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI 215
              ++  S A L          E+A+            +    +  S              
Sbjct: 655  IVQLHNSGAGLTAAEQANFR-EIAKRLEAFGTRKEEPAASAPMEPSATVP---------- 703

Query: 216  LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
              A  +  +    E     +A         +     +   +  E  F   V      ++ 
Sbjct: 704  --AEPAVTEMAGFEEASGPEAFEAETPTADDADIPSLKEITPQEAIFENAVEAEREDDDA 761

Query: 276  SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE--------ILHNLTVAIAIFDQNRY 327
            + +   +       G+    S+   +   +    +         +  L VA+ I   +  
Sbjct: 762  AEEPAVIAEDEATEGLEETASQIEVLTSFIPPRIKMTDGLSVGTVDQLPVAVLIHIGDA- 820

Query: 328  LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
            L   N  F+ L                 LE LR    +   L  +  +E           
Sbjct: 821  LIHANPEFMRLTGYGS------------LEALREVGGIEALLQRRELEEKAAGSGTMMLV 868

Query: 388  HKDTWHLP---------------------------NGQTLHVIVTSNPRGGTIWMFENLT 420
              D    P                           +G++          G +    E   
Sbjct: 869  KADDTLAPVTARLQSVRWEDANALMLALMPVEGKEDGRSDANRTDGRSEGRSEGRSEGRP 928

Query: 421  VQ-VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             + V+   K    V+     ++  ++GV V G +G I+  N +  +L+  +E   + G  
Sbjct: 929  ERMVEKVAKLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYDEQE-TRGKP 987

Query: 480  IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
               + A  S+         L    + S  ++ + + G         L  ++  L ++   
Sbjct: 988  FVMLFAHESQKAVIDYLNGLSDHGVASVLNDGREVIGREAAGGFVPLFMTMGQLTSSNGY 1047

Query: 540  L-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                 ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   +
Sbjct: 1048 CAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGER 1107

Query: 599  LGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G + + +  +Y   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++E    
Sbjct: 1108 FGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVAL 1167

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-N 716
            +  + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  + + N
Sbjct: 1168 VQPQANSQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEAN 1227

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
            G  +  V++ G  +           F   +    R    G GLGL + ++ ++ +    S
Sbjct: 1228 GSVVLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFS 1287

Query: 774  ISSSDEGVTTINCRIPSK 791
            I+S+    T +    PS+
Sbjct: 1288 INSAPNEGTLVEITFPSQ 1305


>gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 1155

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 166/366 (45%), Gaps = 21/366 (5%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ +          G + +S  + R   + +E           +     
Sbjct: 365 LRPLQERDEELLERVG---------GNLGMSIESARYRQRLQEVLAETQQLNEELQVQQE 415

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + ++       ++ Q  LE  ++ + E         +T        + 
Sbjct: 416 ELKTANEELEEQSRVLKESQAHLETQQAELEQTNEQLSE---------RTEALDRKNDEL 466

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q +
Sbjct: 467 SQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQVK 526

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD+A V+AG +++   T  +  L+  ++           + 
Sbjct: 527 FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLA 586

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +V  + ++  +   DRQRL QI   +LSNA+ F+ +G   +  + + +   +F+V++ G
Sbjct: 587 FEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERGQVSMNVSFQADSGIVFAVRDTG 646

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  +++F  F        RR  G GLGLSI     +L GG +++ SS    +  +
Sbjct: 647 IGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFS 706

Query: 786 CRIPSK 791
             +P +
Sbjct: 707 LILPER 712


>gi|89070251|ref|ZP_01157575.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89044171|gb|EAR50329.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 455

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 136/290 (46%), Gaps = 4/290 (1%)

Query: 503 IITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           ++ +   E KS + TL  +++S   L  ++        ++  ++   S R+ R      E
Sbjct: 157 VLEASSRETKSWRDTLLQIAESNAWLSGAMGISVVLLVLVFGLDSVQSRRSLREKERLLE 216

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             + A+  K+ F+  +++ELR+PL +I G   L+  + +G +  +  + +     +   L
Sbjct: 217 ETQAANLAKSEFISVINHELRTPLASIKGAVSLINGNAVGEVPERFRRMLSLAERNCNHL 276

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           + LVND+LD+    AG M+ ++  I L   L     +  T  +   + I+     +    
Sbjct: 277 IQLVNDLLDVEKFSAGKMEFHFKNIDLKSFLTAEIATNQTFANNFGVTIEAAPMPEGVHV 336

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D +RL Q+ S +LSNA  FS   ST+++       + + SV+++G  IP +    +F 
Sbjct: 337 WGDEKRLGQVLSNLLSNAAKFSKPDSTIVVGLKATGTEAVISVQDSGRGIPREKQSRLFE 396

Query: 741 RFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F         +R G GLGLSIV+S ++ H G + + S     TT   ++
Sbjct: 397 PFYQVDSSNERERGGTGLGLSIVKSIVDAHQGRIRLVSEPGRGTTFYIKL 446


>gi|168704424|ref|ZP_02736701.1| multi-sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 538

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/400 (23%), Positives = 163/400 (40%), Gaps = 23/400 (5%)

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN-----TLVKVQGETIDHLSEGVAVFGP 452
           +T+ V    +  G     F  +T ++    + N        +    TID   + V V  P
Sbjct: 148 RTVPVFGR-DELGRLAAAFNVMTRELRKYRRSNLDRLVRAQRTAQATIDSFPDPVLVVDP 206

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            GR  L+NPA R+L+            + +          ++    L        D   +
Sbjct: 207 AGRADLANPAARALFGVGPTAQGDPGPVWSPPEPLGGPVADA----LQLQRAYQPDQFDQ 262

Query: 513 SLQGTLELLSDSVL-EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           ++   L     + L     I  P+  T+   V + D  R            R  D+ K+ 
Sbjct: 263 TVSFRLGGEDRTYLPHVRPIRDPDGDTLGAAVVLHDVTR-----------FRLLDQFKSD 311

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            V  VS+EL++PLT++     +L    +G L +KQ++ +     S+  LL L+  +L LA
Sbjct: 312 LVATVSHELKTPLTSVRLAVHILLEETVGPLTTKQTELLIDARDSAERLLALIEQLLALA 371

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +     +  +      +LL     +   +  + +I + V ++  + + V D  R  Q  
Sbjct: 372 RLQKPHDEGTFHPADPAELLRTAADAARARADDKHITLAVNTNAVVPAVVVDSDRFGQAL 431

Query: 692 SKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
             +L+NA+ ++  G TV L A    +G  + SV + G  IP +    VF+RF     + +
Sbjct: 432 GNLLNNAITYTPPGGTVALAAGMTTDGAVVLSVADTGVGIPAEHLAHVFDRFFRIPGQSE 491

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGL+IV+  +  H G V+  S     TT    +P+
Sbjct: 492 EGGTGLGLAIVKEVVVAHRGTVTCESEPGKGTTFRIILPA 531



 Score = 44.9 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 11/177 (6%)

Query: 147 TQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
            Q +  + + GR            +     +   + L   +L       +   DS    V
Sbjct: 144 GQLERTVPVFGRDELGRLAAAFNVMTRELRKYRRSNLD--RLVRAQRTAQATIDSFPDPV 201

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQK--AIGESRKLFKEEIKKRMISSSALEKN-FC 263
              D AG    AN + +               +    +     +   +    A + + F 
Sbjct: 202 LVVDPAGRADLANPAARALFGVGPTAQGDPGPVWSPPEPLGGPVADALQLQRAYQPDQFD 261

Query: 264 ETVSTLEHGNNKSY--KIVRVLNSFGEA-GIAI---DVSKEITVNDQLTHTYEILHN 314
           +TVS    G +++Y   +  + +  G+  G A+   DV++   ++   +     + +
Sbjct: 262 QTVSFRLGGEDRTYLPHVRPIRDPDGDTLGAAVVLHDVTRFRLLDQFKSDLVATVSH 318



 Score = 37.6 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 27/233 (11%)

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           ++        ++   A     +     I+    ++ A+  +     +    G ++  ++ 
Sbjct: 103 AFGAALGLVALLLAGAGWYLLRTILGPIRAVTEAAHAIGGSGQLERTVPVFGRDELGRLA 162

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
              N           S    +          + +    + + D        N +   L+ 
Sbjct: 163 AAFNVMTRELRKYRRSNLDRLVRAQRTAQATIDSFPDPVLVVDPAGRADLANPAARALFG 222

Query: 341 IDLA--------FLATNPSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDT 391
           +           +    P    + + L+      P+Q + +T    +    ++   H   
Sbjct: 223 VGPTAQGDPGPVWSPPEPLGGPVADALQLQRAYQPDQFD-QTVSFRLGGEDRTYLPHVRP 281

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              P+G TL          G   +  ++T       ++  L + + + +  +S
Sbjct: 282 IRDPDGDTL----------GAAVVLHDVT-------RFRLLDQFKSDLVATVS 317


>gi|254489912|ref|ZP_05103107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224464997|gb|EEF81251.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 690

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 11/245 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +N   ++ D  K++F+  +S+E+RSPL  ++G T LLK +    L  +Q + V+ I 
Sbjct: 307 LLSRNRIAKQTDIAKDAFLASMSHEIRSPLNGVVGMTSLLKETH---LTEEQIKMVKAID 363

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN--IRIKVI 672
            S++ L  ++ DILD + + A  ++L+Y  + L +L          +  E +  IR+ V 
Sbjct: 364 TSTSHLSAIIGDILDFSKISANKIELDYHAVKLVELFQSCIDITLPQAEEKSQYIRLSVS 423

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGS 728
              K   F AD  RL QI   +LSNA+ F+     + L  + D  D        V +NG 
Sbjct: 424 QSLKTVFFKADSTRLKQIVINLLSNAVKFTGMQGNIELAISADTNDQMPVLKIMVSDNGI 483

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            + +D    +F RF        R   G GLGL+I  +   L GGH++++S  +  +    
Sbjct: 484 GMSDDQIARLFERFSQADVSTTRKYGGTGLGLAISRNLAELMGGHITVTSKVDKGSRFIV 543

Query: 787 RIPSK 791
            +P +
Sbjct: 544 TLPLE 548


>gi|165919133|ref|ZP_02219219.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 334]
 gi|165917145|gb|EDR35749.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 334]
          Length = 669

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 209/486 (43%), Gaps = 32/486 (6%)

Query: 329 QFHNRSFVELWEIDLAFLATNPS------NDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            + + +F  ++ I    L  NP+        E  + LR      +  N K     +   Y
Sbjct: 42  VYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRLRHLIMEWQVKNKKGAAYTVD--Y 99

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +  + + +  H  N  +  V       G    + ++++ +     +++  V      ++ 
Sbjct: 100 RIIDAYGEM-HWINETSYPVYEDDQCLGY-AGVVKDVSSEKLRVKEFDNAVHYFRHFVER 157

Query: 443 LSEGVAVFGPDG-RIKLSNPAFRSLWKT-EENRLSPGTHIRN--IAATCSRYYNESDGWD 498
           +S    V G  G +    +P +  +W    E+         +  +    S      + ++
Sbjct: 158 VSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNPKSWIDYVLPEDISNGKVNVNFYE 217

Query: 499 LFAAIIT-----SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             A   T      F    +   G +  + D+               +      D++R E+
Sbjct: 218 TAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIMENGKLVGFAGIAEDVTNDALR-EK 276

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+ +Q   ++ I
Sbjct: 277 ELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLSDEQQGQIDVI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H+  +++K   
Sbjct: 334 SQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGMQLKFDY 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
              + S  + D +R+ Q+   +LSNA+ F+ KG  V L A     D       F+VK+ G
Sbjct: 394 PENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQLTANCLKKDHKKMTLCFTVKDTG 452

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +    S+FNRF    + ++ +  GVGLGLSIV+  +   GG +S++S     +   
Sbjct: 453 IGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFT 512

Query: 786 CRIPSK 791
           C IP +
Sbjct: 513 CIIPFR 518


>gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/368 (24%), Positives = 158/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 330 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLAQI 385

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 386 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 428

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 429 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 483

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 484 VDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRK 543

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D      SV+
Sbjct: 544 QLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSISVR 602

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 603 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 662

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 663 QFTLRIPL 670


>gi|37680448|ref|NP_935057.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37199196|dbj|BAC95028.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 805

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 11/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + +   K +F+  +S+E+R+P+  ++G   +L  +    LN +Q ++++ + 
Sbjct: 339 LEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLNEEQRKHLKTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G M+ + +    + ++  V     T   E  ++ KV S 
Sbjct: 396 DSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVYST 455

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729
              G  + AD+ RL Q+   +L+NA+ F+++G  V +                VK+ G  
Sbjct: 456 VPTGRWYCADKARLRQVLFNLLNNAVKFTARG-LVEVYFEEHTREQANYLSIKVKDTGIG 514

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE   K +F  F        RR  G GLGL+IV+      GG V++SS     T     
Sbjct: 515 IPESAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSSQVGLGTCFTVE 574

Query: 788 I 788
           +
Sbjct: 575 L 575


>gi|28897843|ref|NP_797448.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361774|ref|ZP_05774799.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877003|ref|ZP_05889358.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260899074|ref|ZP_05907515.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|28806056|dbj|BAC59332.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089142|gb|EFO38837.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308093690|gb|EFO43385.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308113233|gb|EFO50773.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 806

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 11/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++    + +   K +F+  +S+E+R+P+  ++G   +L  +    L  +Q +++  + 
Sbjct: 339 LEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLTDEQRKHLSTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G ++ + S   +  ++  +K    T   E  ++ KV S 
Sbjct: 396 DSGDHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQFKVTSL 455

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
              G +   D+ RL Q+   +L+NA+ F+ +G  V +  +     D    + ++K+ G  
Sbjct: 456 VPAGRWYDNDKARLRQVLFNLLNNAVKFTDRG-IVEVTLSEQTHYDKTVLVIAIKDTGIG 514

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  K +F  F        RR  G GLGL+IV+      GGHV++ S +   TT    
Sbjct: 515 ISKEAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIGTTFTVE 574


>gi|330938839|gb|EGH42358.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 402

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 148/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 64  QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGH---------SLGEALG 114

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 115 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 174

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 175 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 225

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 226 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQDIVLML 285

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 286 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 345

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 346 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 402


>gi|313672134|ref|YP_004050245.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938890|gb|ADR18082.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 834

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 168/416 (40%), Gaps = 51/416 (12%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE----------TIDHLSEGVAVFGPDGRIKLSNPA 462
           ++   NL ++  +E +   L +   E           +    +G+ V   +  +   +  
Sbjct: 292 VFWIWNLNLRKRVEERTKQLSEKNKELALNNSKLNAILSASPDGIGVMNMNMELVFISDK 351

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              ++K  E         +NI       Y +    +     I+   + +K    +  L+ 
Sbjct: 352 LAKMYKI-EPEKKFEYLNKNITDFVDESYRDKMMKN-----ISDIFEGKKYWNLSEYLVR 405

Query: 523 DS-----VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEI---- 568
           D+      +E S   L +        +    + T+  R E+ L + NE L++ +      
Sbjct: 406 DAYGEQFWVEVSSSLLYDDAQKPYGILFVERDCTERKRIEQQLLDYNEKLKENNRALNEL 465

Query: 569 ----------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                     K++F+  +S+ELR+PL  ++G  +L+          + +++   I +S  
Sbjct: 466 KTKEEEANIAKSNFLAIISHELRTPLNGVLGLLELIHKD-----PERFNEFFPVILSSGE 520

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+NDI DL  V+ G ++L      +++ +NE+      K+ ++N+ + V  +   G
Sbjct: 521 QLRVLINDISDLTKVEQGKLELVEKRFSISNFINEIVSYAKIKIQDSNLELVVDIEQFEG 580

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNG--DFIFSVKNNGSSIPEDM 734
               D  RL Q+   +++NA+ ++  G    VI K   ++      F V + G  I  + 
Sbjct: 581 YLEGDAVRLRQVVYNLINNAIKYTDNGFVKVVIRKLFENDKIMRIYFEVTDTGIGISPND 640

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             ++F  F        ++  G G+GL I ++ +N+   ++++ S     +    ++
Sbjct: 641 IDNIFKPFKRLDGSYTKKRYGSGIGLYISKAILNMMNSNINVESEVGKGSKFYFKL 696


>gi|296186460|ref|ZP_06854863.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296048907|gb|EFG88338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 554

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 145/311 (46%), Gaps = 20/311 (6%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
           S   N+++  +++   +    +ER +  +Q    LL+++ + +          +    + 
Sbjct: 220 SEILNKAEELEIYKNHLEELIEERTADLVQANANLLAETHIRHKA-------ELEAIQSN 272

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGS 601
                 +R L +      + ++++  F  ++S+ELR+PL  I     +L    K   L +
Sbjct: 273 IKYEEKKRLLNK----AVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGLDN 328

Query: 602 LNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            N  K  +Y+  I  +S  LL L+N+++D+  +DAG  ++  S   +  +  ++  S+  
Sbjct: 329 DNQFKTDKYLHTIKQNSYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSVVE 388

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +   NIR+   ++ +      D  ++ +I   +LSNA+ F+ K  T+ +         I
Sbjct: 389 YVENKNIRLIFDTEVEEKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNIYDSTDKVI 448

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            S+K+ G  I + M K +F++FV       RR  G G+GLS+V+S + +H G +S+ S  
Sbjct: 449 ISIKDTGIGIDKSMQKLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVSEL 508

Query: 779 EGVTTINCRIP 789
              +     +P
Sbjct: 509 GEGSEFIIELP 519


>gi|295101501|emb|CBK99046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 978

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 173/381 (45%), Gaps = 17/381 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTH 479
            + + E  Y    ++  +   ++ +   +   +  ++   +P    L       +     
Sbjct: 324 RRKNTEISYRD--ELFQKLSLNVDDVFLMLDAETSKVDYVSPNIERLLGIPWREVRQNAF 381

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              +    +    ES    L +     +D E + L+ T E      +          + +
Sbjct: 382 --ALDKLGAPEQAESFLDGLLSGQQREWDLEFEHLE-TKERRWFHNIAIGSEVEGRTKYI 438

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           L   + T   +  +AL++   A   A+  K++F+ ++S+++R+P+  IIGFT L  ++  
Sbjct: 439 LVMSDRTADKQVNQALSDAVAAAETANRAKSAFLSNMSHDIRTPMNAIIGFTTLAISNID 498

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                +   Y+    ASS+ LL+L+ND+LD++ +++G + L    + L+++L+++K  ++
Sbjct: 499 DK--ERVKDYLAKTLASSSHLLSLINDVLDMSRIESGKLHLEEVEVNLSEVLHDLKTIVS 556

Query: 660 TKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +++   + + + + D        D+ RL QI   +LSNA+ F+  G TV ++  +  G 
Sbjct: 557 GQIYAKQLELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGQ 616

Query: 719 FI------FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGG 770
                   F +K+NG  +  +  K +F  F         + +G GLG++I ++ +++ GG
Sbjct: 617 VRGCGQYEFRIKDNGIGMSPEFAKKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGG 676

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + ++    +    R+P +
Sbjct: 677 TIEVQTAQGKGSEFIIRVPLR 697


>gi|260769448|ref|ZP_05878381.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Vibrio furnissii CIP 102972]
 gi|260614786|gb|EEX39972.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Vibrio furnissii CIP 102972]
          Length = 1190

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 155/402 (38%), Gaps = 35/402 (8%)

Query: 411 GTIWMFEN------LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           G I  F N      +  +   E   +  ++     I+ +   + V     ++   N  + 
Sbjct: 543 GIISTFWNRRLAQQVKERQAAENSLSAQLQFMQSLINGIPHPIYVRDNQLKLVTCNSQYY 602

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++   +   + G   + +             +            +R       EL    
Sbjct: 603 QVFGL-DRASAIGKTPQEVKKNLQEAVKFESDYQQVIRTGEPILVDRTLHVAGTELSIYH 661

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +E    P  +       V       ++R   +  E L +A + K +F+  +S+E+ +P+
Sbjct: 662 WIE----PYKDTAGHCLGVICGWIDVSDR--RDLIEQLTQASKAKTTFLATMSHEIHTPM 715

Query: 585 TNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             IIG  ++ +K S  G  +      +E    S+  L  L+ DILD+  +++G + +   
Sbjct: 716 NAIIGLLEIAIKKSHQGHFDVPA---LEVAYDSAHNLQVLIGDILDIVRIESGHISIAPQ 772

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFS 702
            + L DL+  + +       +  I++ V  D  +      D  RL QI S +LSNA+ F+
Sbjct: 773 RVNLRDLVESITRVFDGLARQKYIQLDVHIDPTITQDVYVDPTRLKQILSNLLSNAIKFT 832

Query: 703 SKGSTVILKAARDN----------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +G  V +                        + F VK+ G+ I E+  + +F  FV   
Sbjct: 833 DQGG-VTVTVTNHGPSETTFTEPEQQGSIAERYSFVVKDTGTGISEEAQQRLFAPFVQVH 891

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               RRG GLGLSIV+S  N+ GG +++ S     T I   +
Sbjct: 892 SDVDRRGAGLGLSIVQSLCNMMGGTIALCSEVGVGTQIEVSL 933



 Score = 42.2 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 21/152 (13%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ E       LS  +   + L + +   ++ RD    ++  N  Y +     G+  
Sbjct: 553 LAQQVKERQAAENSLSAQLQFMQSLINGIPHPIYVRDNQLKLVTCNSQYYQ---VFGLDR 609

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------- 286
             AIG++ +  K+ +++ +   S  ++        L     ++  +     S        
Sbjct: 610 ASAIGKTPQEVKKNLQEAVKFESDYQQVIRTGEPILVD---RTLHVAGTELSIYHWIEPY 666

Query: 287 --------GEAGIAIDVSKEITVNDQLTHTYE 310
                   G     IDVS    + +QLT   +
Sbjct: 667 KDTAGHCLGVICGWIDVSDRRDLIEQLTQASK 698



 Score = 41.5 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 62/161 (38%), Gaps = 20/161 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E +++ QL     +++ +   I + D    L   N  + +++ +D A  A   +  E+
Sbjct: 562 AAENSLSAQLQFMQSLINGIPHPIYVRDNQLKLVTCNSQYYQVFGLDRA-SAIGKTPQEV 620

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNPRG--- 410
            + L+ A K         ++ +   V ++ E      T H+  G  L +     P     
Sbjct: 621 KKNLQEAVK---------FESDYQQVIRTGEPILVDRTLHVA-GTELSIYHWIEPYKDTA 670

Query: 411 ----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
               G I  + +++ + DL  +     K +   +  +S  +
Sbjct: 671 GHCLGVICGWIDVSDRRDLIEQLTQASKAKTTFLATMSHEI 711


>gi|255029763|ref|ZP_05301714.1| hypothetical protein LmonL_13124 [Listeria monocytogenes LO28]
          Length = 383

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 152/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 14  GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 73

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +L     L ++    +
Sbjct: 74  VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTLDKPYVLRAN----F 123

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 124 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 172

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 173 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 231

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 232 DFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 290

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 291 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 350

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 351 AHGGRIWAERNKNKGTIIKFTLP 373


>gi|117923577|ref|YP_864194.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607333|gb|ABK42788.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 948

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 10/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              R+E AL   ++   KA+  K+ F+  +S+E+R+P+  I+G T   +  +   L + Q
Sbjct: 413 QRRRSEIALRIASDEALKANRAKSDFLAVMSHEIRTPMNAIMGMT---ELLEETELTTIQ 469

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+    +S   LL L+NDILD++ V+AG M++  +   L+ ++++  Q I  +  E  
Sbjct: 470 RNYLSICRSSGQNLLQLINDILDISKVEAGRMEVAVAPFHLHRIIHDANQVILFRAQEKG 529

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIF 721
           +   V  D  + +  + D+ R+ QI    L N++ F+  G+   L   R         + 
Sbjct: 530 LNQIVYIDPAVPTILLGDQARIRQILINFLGNSVKFTQSGTIATLVTTRAHANKEDQLVI 589

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I +   +++F  F       QR   G GLGL+I    + L  G VS+SS   
Sbjct: 590 HVVDTGIGIEQSEQEAIFKAFHQVDSSNQRQQGGTGLGLAICLKLVALMQGSVSLSSRAG 649

Query: 780 GVTTINCRIPS 790
             +T    +P 
Sbjct: 650 KGSTFTLTLPL 660


>gi|283836244|ref|ZP_06355985.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
 gi|291067608|gb|EFE05717.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
          Length = 778

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 INEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVNLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTPQG-QVTVRARYDQG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           +   F V+++G  IP+D    +F  +         +   G G+GL++ +      GG ++
Sbjct: 429 NMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +     
Sbjct: 489 VSSQAGKGSIFTLT 502



 Score = 44.9 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  + + +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQETFEQLKVEINEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q    +   ++  E  +++I +   EK F   VS           G    ++I
Sbjct: 189 GKS--EKQLVNLKPADVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|90419743|ref|ZP_01227652.1| putative sensor histidine kinase, response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335784|gb|EAS49532.1| putative sensor histidine kinase, response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 919

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 143/330 (43%), Gaps = 29/330 (8%)

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL------SDSVL 526
            +     I  + A    + +  +  DL   +    +DE   L G    +       D +L
Sbjct: 193 WVRIARIINPLRALAGEFADIGERSDLSKRLRVVSNDEVGVLSGAFNDMFARIDERDRLL 252

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +     L +  T+ T    +    AERA           +  K+ F+  VS+E+R+P+  
Sbjct: 253 QRHRETLEDTVTLRTAEMRSAKDEAERA-----------NAAKSEFLATVSHEIRTPMNG 301

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++   ++L       + S+  ++ E I  S   LLN++NDILD++ ++AG + L    + 
Sbjct: 302 MLVMAEMLS---AAPIPSRYLRHAEIILRSGRGLLNILNDILDMSKIEAGRLDLEEIPLS 358

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
           ++ L+ +V    A K  E ++ I  + D  +    + D  R+ Q+ + +++NA+ F+  G
Sbjct: 359 VDTLVEDVASLFAEKAREKSLSIATMIDVDVPAEVIGDPVRISQVLTNLVNNALKFTETG 418

Query: 706 ST---VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
                V   AA D G      F++++ G  IP D    +F RF        R   G GLG
Sbjct: 419 GVTIAVECVAAEDAGGPPMLGFTIRDTGIGIPADKLGKLFGRFTQADQTITRKFGGTGLG 478

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCR 787
           L+I +  +   GG V ++S +   +     
Sbjct: 479 LAISKQLVEAMGGTVRVTSEEGVGSCFGFE 508


>gi|218781752|ref|YP_002433070.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763136|gb|ACL05602.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 886

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 157/403 (38%), Gaps = 37/403 (9%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           ++         +      ++ S+   + GPD     ++P+  S +  +   +      RN
Sbjct: 309 INAARALTASEERFRALTENSSDITLIIGPDNTYTYASPSVFSTYGYKPGMVIGQYTSRN 368

Query: 483 IAATCSRYYNESDGWDL--FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           +         ++    L      I       +   G    L + VL   +        + 
Sbjct: 369 MHPKDVSMVEKALEKALTNPGQPIKLEGVRFRHRDGGWYWL-EGVLNSQMDVPGVGGVVF 427

Query: 541 TFVNVTDSVRAERALTEKNEALRKAD---------------------EIKNSFVQHVSYE 579
           +  +VT+   +E+ L +  + L K +                       K+ F+ +VS+E
Sbjct: 428 SGRDVTERKASEQKLQDAYQQLEKKNVELQNAHELLEARARDLEVGSMYKSQFLANVSHE 487

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL +II  + +L  ++  +L     +  + I +S   LL L+N++LDL+ ++AG M 
Sbjct: 488 LRTPLNSIILLSGILCENREKNLTDSDLECAQAIQSSGKALLLLINEVLDLSKIEAGKMA 547

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
           +N S       +  +++          +   V  D  +     +D QRL Q+    +SNA
Sbjct: 548 VNTSFFETKTFVQAIEREFLPLAKNKGLDFSVRMDADIPLRVQSDSQRLEQVLRNFISNA 607

Query: 699 MDFSSKGSTVILKAARDNGDFI----------FSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           + F+ +GS V+  +     D +          FSV ++G  IP++  + +F  F      
Sbjct: 608 LKFTKQGSVVLRVSRPRKEDALPGYSPSKCAAFSVTDSGIGIPQEKMEEIFEAFTQADGT 667

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             R   G GLGL+I      L GG V   S     +T    IP
Sbjct: 668 TSREFGGTGLGLTISREIARLIGGAVRAESEPGAGSTFTLVIP 710


>gi|194364514|ref|YP_002027124.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194347318|gb|ACF50441.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 1074

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 172/479 (35%), Gaps = 34/479 (7%)

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            + +F   + L   + S   L            S    L+ LR   +       + W   
Sbjct: 245 GVPVF---QRLSLFDASGRRLLGDGADISDAGTSWQAGLDGLRFLMRSE-----RGWLAV 296

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
               ++    H     L       ++          +    +        +         
Sbjct: 297 YHVSWRQIFQHPQGPLLGAVLVALLLALGGTLVLRAYRRSVIEPLRSNHARLLESEAFSR 356

Query: 438 ETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
             +D+   G+ +    DG + L N   RS     E+ L  G H         R    + G
Sbjct: 357 TILDNAPIGLCLLRRADGNVLLDNALARSWLG--EDHLGGGWH-----GPWRRSVMAAGG 409

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
             L   +  +  D R  L      +  +   Y   P      +  F++++    AE+ L 
Sbjct: 410 TTLGDGLAYNTPDGRHLL------VKATPARYRGEP----AVLCLFIDLSSQHEAEQVLQ 459

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +   A  +A+  K+ F+  +S+E+R+PL    G    L+   L  L+++Q  Y+  I  S
Sbjct: 460 QARRAADQANRAKSQFLATMSHEIRTPL---YGVLGTLELLGLTPLDARQQHYLATIQRS 516

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S+ L+ L++DILD++  +AG + L  S      L  +   S A       ++     D  
Sbjct: 517 SSTLMQLISDILDVSKAEAGQLSLEPSPFDPVRLTEDALDSYAAAAANKGLQFYACIDAD 576

Query: 677 LG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSSIPE 732
           +  S   D  R+ QI + ++SNA+ F+  G  V+   ++         + V + G  I  
Sbjct: 577 VPASVCGDAARIRQILNNLISNALKFTDSGRVVVRGSVRWQDQRCWLQWQVTDTGIGIAS 636

Query: 733 DMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F  F          RG GLGL+I      L  GH+ + S     ++ +  +P 
Sbjct: 637 EHQSHLFEPFFQANPGTDAMRGTGLGLAICAHLAELMDGHLRVVSESGLGSSFSVELPL 695


>gi|215433475|gb|ACJ66703.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2151

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 155/381 (40%), Gaps = 29/381 (7%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIRNIAA 485
              ++T  +V    ++ L+E + +         +N    +L K  +            +  
Sbjct: 1323 ASFHTFSEVHMGFLEQLTESIGIV---LNTIAANMRTEALLKQSQALTDELRKQQEELTE 1379

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            T  R   ++        ++    +E +S    L+  +          L + Q        
Sbjct: 1380 TNKRLEQQATSLQQSEELLKRQQEELRSTNEELQEKAK---------LLSEQKTEVERKN 1430

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             +  +A+ AL EK E L    + K+ F+ ++S+ELR+PL +++  +  L  +  G+L S+
Sbjct: 1431 GEVEQAKLALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSDNVDGNLTSR 1490

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q ++ + I AS   LL L+NDILDL+ +++G M ++   +   DL   V ++      + 
Sbjct: 1491 QVEFAKTIHASGADLLELINDILDLSKIESGTMAVDVGPLRFGDLREFVDRTFRQVADKK 1550

Query: 666  NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------ 718
             +   + + D   G    D +RL Q+   +LSNA  F+  GS  +       G       
Sbjct: 1551 GLEFHIGLGDSLPGELETDAKRLQQVLKNLLSNAFKFTESGSVSLDIGLAKGGWSPDHAM 1610

Query: 719  -------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
                     F+V + G  IP+D  + +F  F         +  G GLGLSI      L G
Sbjct: 1611 LSAAPAVVAFTVVDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREIARLLG 1670

Query: 770  GHVSISSSDEGVTTINCRIPS 790
            G + + S     +     +P 
Sbjct: 1671 GEIRLESDVGTGSAFTLYLPL 1691


>gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|20139412|sp|P58662|RCSC_SALTY RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with
           RcsB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 948

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 190/487 (39%), Gaps = 45/487 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N        S + L       +   P   +   +        E +  K+
Sbjct: 239 SLPMGVTIIDENG------HSLISLTG-PDGIIKAEPRWMQERSWFGYTPGFRELVLKKS 291

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              +  S+  S               L+ I+ +   G  ++    +  +           
Sbjct: 292 LPPSSLSIVYSV-PVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ 350

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 351 RLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQII 406

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I  L +  T        
Sbjct: 407 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST-------- 448

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 449 -RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 504

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 505 ERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 565 LGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRD 623

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 624 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 683

Query: 784 INCRIPS 790
              RIP 
Sbjct: 684 FTLRIPL 690


>gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82]
 gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164]
 gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82]
 gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164]
          Length = 934

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 14/244 (5%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    A++ K+ F+ ++S+ELR+PL +I GF  L+      +L+++Q+ Y++ I  
Sbjct: 276 RQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQ--DNLSNEQNLYLQTIRK 333

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-D 674
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    +  I +     D
Sbjct: 334 SSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYGD 393

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSI 730
                 V D  R  QI + ++SNA+ F+  G  ++      +G       FSV+++G  +
Sbjct: 394 DVPQYIVGDVLRFKQILTNLISNAIKFTPDGEIIVRARMEQDGMEQCLLHFSVQDSGIGL 453

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVTT 783
                K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +T
Sbjct: 454 SGTDRKKLFESFSQGDTSVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGST 513

Query: 784 INCR 787
               
Sbjct: 514 FWFT 517


>gi|254488432|ref|ZP_05101637.1| signal transduction histidine kinase [Roseobacter sp. GAI101]
 gi|214045301|gb|EEB85939.1| signal transduction histidine kinase [Roseobacter sp. GAI101]
          Length = 730

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 97/527 (18%), Positives = 196/527 (37%), Gaps = 35/527 (6%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF-VELWEIDLAFLATNP 350
           A   +  +       +  E +  +    A+FD N  L   N  F  +L +I    L    
Sbjct: 71  AQLATANVETEIAQANLTEAIETINEGFALFDTNDRLVLSNSRFCRDLCDISKN-LHAGM 129

Query: 351 SNDELLEFLRSAN--KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
           + D+ +  +  +    LPE +  + W       ++      +     + + L +      
Sbjct: 130 AFDDYVTVISQSRFLALPEDMTPEAWATARHERHRDDHVVFNVSLTQD-RWLQISEHRTA 188

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVK-----VQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           RGGT+ +  ++T  + LE      ++         T+DHL++GV +F  + ++   N   
Sbjct: 189 RGGTVILQTDVTNIIRLERLERDRMRDKQAQTLQATLDHLNQGVCIFDHEKKLVGWNKRM 248

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLS 522
             L     ++ +       +          S  +D+            R ++   +    
Sbjct: 249 DRLLDLPPHQSALRLPFLTLLERLEHQLEFSADFDVDMLKRWAEHGAGRTAIAFEVTRSR 308

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA----------------- 565
           + +L      +P+   +++F +VT    + RAL E NE L K                  
Sbjct: 309 NRILSVFGQEMPDRGFVISFTDVTVERESVRALAEMNERLEKRVQHRTHELGLALSEAKR 368

Query: 566 -DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +  K+ FV   S++L  PL+    F   L      +     +   E   +S      ++
Sbjct: 369 ANASKSRFVAAASHDLLQPLSAAKLFVASLADQIGETDLLNIANKAETALSSVEH---II 425

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
             +LD++ +D+     +   + L+ LL  ++  +        + ++++  G   +  +D 
Sbjct: 426 EALLDISKLDSNEAVFDIKPVRLSALLRPLRDELTPVAMAKGLDLRILECG--LTVCSDP 483

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
             L +I   ++SNA+ ++ KG  VI+   R  G     V + G  I +   + VF  F  
Sbjct: 484 GYLRRIVQNLISNAIRYTDKG-RVIVGVRRVGGMARIEVWDTGCGISQADQQVVFQEFKR 542

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              R    G+GLGL+IVE         + + S     +  +  +P +
Sbjct: 543 LDARTSHAGLGLGLAIVERACKSLDHPLRLWSEPGKGSCFSFDLPIR 589


>gi|254228144|ref|ZP_04921573.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262393930|ref|YP_003285784.1| putative sensor/response regulator hybrid [Vibrio sp. Ex25]
 gi|151939217|gb|EDN58046.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262337524|gb|ACY51319.1| probable sensor/response regulator hybrid [Vibrio sp. Ex25]
          Length = 566

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 8/245 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ER +    +   ++++    FV  +++ELR+PL  ++G  +LL  ++LG    +Q  Y+
Sbjct: 188 LEREVE-LRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQLG---EEQRHYL 243

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             ++ S  +L  ++ND+LD + ++AG+M++        +L   +    + K  E  I   
Sbjct: 244 NNLTQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWEELEKAIMGVFSAKAAEKRIHFS 303

Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +     +  F V D +R+ QI   ++ NA+ F+  G  V L+    NG   F V++ G  
Sbjct: 304 IDKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGGVV-LRVEWINGIAHFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +   S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPIEAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVS 422

Query: 788 IPSKE 792
           IP KE
Sbjct: 423 IPLKE 427


>gi|71064923|ref|YP_263650.1| putative signal transduction histidine kinase sensor [Psychrobacter
           arcticus 273-4]
 gi|71037908|gb|AAZ18216.1| putative signal transduction histidine kinase sensor [Psychrobacter
           arcticus 273-4]
          Length = 1135

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 137/326 (42%), Gaps = 14/326 (4%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I  +     R + ++    +        +  ++ L  TL  L  S  E       
Sbjct: 215 RWIAPIYELRLQLQRTHVDNLYQPIPVESNGELNLLQQDLVRTLRRLYVSFQELKEHAEQ 274

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    +  +      ++    +A     + K++F+ ++S+ELR+PL +I GF +LL
Sbjct: 275 TEDDLRLAFDEMEMQNI--SIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLL 332

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G LN +Q  YV+ I  SS  LL LVND+LD + ++AG + L+     L D + +V
Sbjct: 333 ARH--GELNPEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDRHEFDLYDTIYDV 390

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++    E  +R+ V+    +      D  RL Q+ + I+ NA+ F+  G  V+  + 
Sbjct: 391 VDMLSPVSAEKGLRMAVLFYNDVPMRVNGDALRLKQVLTNIVGNAIKFTDSGDVVVRVSL 450

Query: 714 RD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            D  +   + SV+++G  I     K +F  F         Q  G GLGL I +    L G
Sbjct: 451 DDYQDNYLMISVQDSGKGISLSDQKMLFQSFSQGDPSITRQYGGTGLGLVISKQLTRLMG 510

Query: 770 GHVSI-----SSSDEGVTTINCRIPS 790
           G +        +      T   R+P+
Sbjct: 511 GDIGFYDNMQENISNQGATFWFRMPA 536


>gi|330952072|gb|EGH52332.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 595

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +     +
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGEALS 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSVETLLQEAKARFEDQAQEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|288941589|ref|YP_003443829.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896961|gb|ADC62797.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 755

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 147/376 (39%), Gaps = 12/376 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            Q   E       +     ++ L + V  F    G +  S      L  +     +    
Sbjct: 13  EQTGAEQALRESEERYRSLVESLPDIVYSFSDKRGGVVWSARVEAVLGYSLAELQANPYL 72

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                    R   ++             +   K   G    L D  ++  ++        
Sbjct: 73  WNQSIHPDDRPRVQAVIAAFKQGAHFDLEYRIKDRWGQWRWLHDRSIQRRLVG-DEVILD 131

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T+  + ERA  E   A   A   K+ F+ H+S+ELR+PL  +IG T +L+    
Sbjct: 132 GLASDITERKQTERAQVEAKLAAEAATAAKSDFLAHMSHELRTPLNAVIGLTQVLEQ--- 188

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L  +Q   V+ I  +   +L + NDILDLA ++A  + +      L+ LL  ++    
Sbjct: 189 ANLPLEQRSLVQRIRLAGQAMLQISNDILDLAKIEANQLAIASRPCTLSGLLQRLESLQG 248

Query: 660 TKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAAR 714
                  + +++     L G  + D  RL QI + ++SNA+ F+ +G+       L  + 
Sbjct: 249 EAARAKGVTLEIAPAPALSGQVLTDPLRLEQILANLVSNAIKFTDRGTVRVWTETLSVSE 308

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            +    F V++ G  I     + +F  F+       RR  G GLGLSI +  + L GG +
Sbjct: 309 SSARLRFVVRDTGIGIAPSALEQLFTPFIQADSSITRRFGGTGLGLSISKRLVELMGGTI 368

Query: 773 SISSSDEGVTTINCRI 788
            + S +   +T    +
Sbjct: 369 GVESCEGQGSTFWFEL 384


>gi|229004155|ref|ZP_04161956.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4]
 gi|228757016|gb|EEM06260.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4]
          Length = 466

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 132/295 (44%), Gaps = 5/295 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 FIMILLTIWIGRKIIIAITKPLSQMERVANHMATGDFSERITISSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F  +VS+ELR+PL+ I G+++ +          +QS++ + I   +  
Sbjct: 230 NSLEMEDVKRKEFSANVSHELRTPLSYIKGYSEAILDGVAKG--QQQSKFTQLIHREAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV   L+ +V ++   K  E  + I    D  +  
Sbjct: 288 MQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLETYELKCMEKELYISTDLDPDII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  R+ Q+   +L NA+ ++++   + ++  + +      +K+ G  I  +  + + 
Sbjct: 347 VTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLKKKDRQCELKIKDTGIGIDAEHLEQLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            RF         +  G GLGL+IV+  +++H G   + S     TT+  ++P+ E
Sbjct: 407 ERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRVESEKGKGTTVIIKLPANE 461


>gi|254286226|ref|ZP_04961185.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|150423641|gb|EDN15583.1| sensor histidine kinase [Vibrio cholerae AM-19226]
          Length = 1147

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|297580999|ref|ZP_06942924.1| sensor histidine kinase FexB [Vibrio cholerae RC385]
 gi|297534825|gb|EFH73661.1| sensor histidine kinase FexB [Vibrio cholerae RC385]
          Length = 785

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 154/375 (41%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+S+Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T +  I
Sbjct: 492 VNSEEGFGSTFSVTI 506



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|254509234|ref|ZP_05121329.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
 gi|219547825|gb|EED24855.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
          Length = 573

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 129/268 (48%), Gaps = 12/268 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +LE ++I +   + +   V++       R L        +A++ K+ F+  +S+ELR+PL
Sbjct: 172 LLERALIDIERTEQLQQLVDIKT-----RQLKSAQVRAEQANQAKSRFLAMMSHELRTPL 226

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           + ++G+ D+L      S    Q + +E + +S+ +LL L+NDIL+L+ +++G  ++    
Sbjct: 227 SAVLGYVDVLL---ADSKCDHQIEILEKMESSAELLLVLINDILELSRIESGEFRIKCQW 283

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           + L + L  + +          +++ V  D     S   D  R+LQI   +L NA+ F+ 
Sbjct: 284 VNLKNELEFMLEHFYALSDAKGLKLNVNLDIDAHHSVWVDPARILQIVFNLLGNAIKFTH 343

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
            G  V L A   + + I  V++ G  I     ++VFN+F         +  G GLGL+I 
Sbjct: 344 AGH-VSLHAEVTSQELIIEVEDTGIGIDPSRIETVFNQFKQADDSITRRYGGSGLGLTIS 402

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + L  G + + S     +    ++P
Sbjct: 403 KHLVTLMNGSIRVESEKGKGSRFKIKLP 430


>gi|156744216|ref|YP_001434345.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156235544|gb|ABU60327.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 579

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 9/301 (2%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           G D    +  +F+    SL+    LL +   E S   L   Q ++   ++    +AE A 
Sbjct: 239 GGDELVLLANNFNLMVASLRQQRMLLEERNAELSAS-LETQQRLME--DLVQRKQAEEAA 295

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                A   A   K+ F+  +S+ELR+PL  I+G+  LL         S+    +E I +
Sbjct: 296 HRAQAAAEAASHAKSMFLATMSHELRTPLNAILGYVQLLHLEAQIHGRSEMLPDLERIRS 355

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +   LL ++++ILD + ++ G M +   T  ++ + +E+   I       N  + +    
Sbjct: 356 AGKHLLTIISNILDFSKIEQGRMNVEIDTFNVSVIAHEMISIIEPLARNRNNTLTLTCPP 415

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGSSIPE 732
            +G   +D  ++ QI   +LSNA+ F+  G+   T+  +   D     FSV + G  +  
Sbjct: 416 DIGMMQSDAGKVRQILFNLLSNAVKFTDNGTVALTIERECCSDGDWVRFSVADTGIGMSP 475

Query: 733 DMCKSVFNRFV---SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F  F     +      RG GLGL++ +    L GG +S++S     +    R+P
Sbjct: 476 EQLTRLFQPFTQVHQSHSSHAHRGTGLGLALSQQLCRLLGGDISVTSEVGRGSVFTVRLP 535

Query: 790 S 790
           +
Sbjct: 536 A 536


>gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 948

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 190/487 (39%), Gaps = 45/487 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N        S + L       +   P   +   +        E +  K+
Sbjct: 239 SLPMGVTIIDENG------HSLISLTG-PDGIIKAEPRWMQERSWFGYTPGFRELVLKKS 291

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              +  S+  S               L+ I+ +   G  ++    +  +           
Sbjct: 292 LPPSSLSIVYSV-PVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ 350

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 351 RLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQII 406

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I  L +  T        
Sbjct: 407 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST-------- 448

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 449 -RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 504

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 505 DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 565 LGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRD 623

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 624 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 683

Query: 784 INCRIPS 790
              RIP 
Sbjct: 684 FTLRIPL 690


>gi|153803131|ref|ZP_01957717.1| sensor histidine kinase [Vibrio cholerae MZO-3]
 gi|124121322|gb|EAY40065.1| sensor histidine kinase [Vibrio cholerae MZO-3]
          Length = 1147

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|89902539|ref|YP_525010.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89347276|gb|ABD71479.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 920

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 123/242 (50%), Gaps = 3/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   L + NE L+  D +K+ F+  V++ELR+PLT+I    +LL+     +L +++ Q+
Sbjct: 663 RATAELRQANEQLKSLDRLKDDFMSSVTHELRTPLTSIRALAELLRDDPRIAL-AQRRQF 721

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I + +  L  LVN +LD+A +++G  + + + + +  L+++   + A    E  I +
Sbjct: 722 IEIIVSETERLSRLVNQVLDMAKIESGHAEWHTAEVDMRALVSQAVSTTAELFRERQIAV 781

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGS 728
           +V    ++ + +AD  RL+Q+   +LSNA  F    G  V +  + D+     +V +NG 
Sbjct: 782 EVALPEQVPTLMADPDRLMQVMLNLLSNAAKFVPLPGGRVRVSLSSDDSGVTVAVSDNGP 841

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +  +    +F+RF        R +G GLGL I    +   GG + + S  +        
Sbjct: 842 GVAAEQQALIFDRFRQGGDAANRPQGTGLGLPISRQIVEHFGGRLWLESGLQQGARFLFH 901

Query: 788 IP 789
           +P
Sbjct: 902 LP 903


>gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
 gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
          Length = 1297

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 124/724 (17%), Positives = 246/724 (33%), Gaps = 103/724 (14%)

Query: 154  KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
               G+V    A  R   +       AE       L +     +    +     W  +   
Sbjct: 441  DASGQVVQLVAISR--DITDFKQAEAERLQAELVLRSAHVQLESALAAGSVYTWRWNIPA 498

Query: 214  DILWANISYKKNTETEGIVFQKAIGESRKLF----KEEIKKRMISS-----SALEKNFCE 264
            D +  N ++      +      A G   + F     E  + R+ ++        E+   E
Sbjct: 499  DRVVVNAAFAHLFNVDPADATTA-GLPIEFFINSIHESDRPRVSAAIQQAIETGEEYTAE 557

Query: 265  TVSTLEHGNNKSY----------------------KIVRVLNSFGEAGIAIDVSKEITVN 302
                   G  +                         I    +   EA IA D+     ++
Sbjct: 558  YRVHTATGEERWLTARGQVEYDAAGNSIAFPGALADITD--HKQAEAAIAADLRDTQLLH 615

Query: 303  D---QLTHTYEIL----HNLTVAIAIFDQN----RYLQFHNRSFVELW------EIDLAF 345
                QLT+  +I       +  AI +   +    + L    +  V L        +   F
Sbjct: 616  GLSVQLTNETDIQVLYDEIMATAIVLTGADAGTVQILDTATQDLVLLATQGFEPNLTEYF 675

Query: 346  ------------LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS------VYKSSET 387
                        +A    N   ++F    ++ P+       +   F       + +S + 
Sbjct: 676  HRVNASSNTSCGIALKNGNRTFIDFDVPESEDPDGSLRIHVEAGYFFGQSTPLIARSGKP 735

Query: 388  ------HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
                  H   +  P+ + L  +              +L  Q   +             I+
Sbjct: 736  IGMVSTHWQEYRQPSDRELRFL------DLLARQAADLIEQRQTQAALRDSENRFRMAIE 789

Query: 442  HLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN-RLSPGTHIRNIAATCSRYYNESDGWDLF 500
                G   +       + +   ++++        S       +     +   ++  W L 
Sbjct: 790  SAQLGTWDWNLIANQLIWDEGCKAMFGLLPQAESSIEVFFAGLHPNDRQRLEQAVQWTLN 849

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVR--AER 553
             A    +D E +++   +E   +  +        +A     + + T +N+T+  R  AER
Sbjct: 850  PASSGKYDVEYRTI--GIEDGVERWIAARGQAYFDAGGNPQRFVGTVLNITEQKRIEAER 907

Query: 554  ALTEKNEAL-----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                  E        +A+ IK+ F+  +S+ELRSPL  I+G+  LL+  KL     +Q++
Sbjct: 908  EQLLVREQAARAEADRANRIKDEFLAVLSHELRSPLNPILGWIRLLQNGKLDL--PRQTE 965

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             ++ I  ++ +   L+ D+LD++ +  G + L  + I L  +++   +++       NI+
Sbjct: 966  ALKTIERNAKLQSQLIEDLLDISRIMQGKLTLTAAPISLTFVISAAIETVRLAAEAKNIQ 1025

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            I +     +     D  RL Q+   +L+NA+ F+ +G  VI++  + +      V + G 
Sbjct: 1026 ILLDLSTTVSYVSGDANRLQQVVWNLLTNAVKFTPRGGQVIVELKQLDQLAQIRVSDTGK 1085

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS-SDEGVTTIN 785
             I       VF  F        R   G+GLGL+IV   + +HGG V   S  ++      
Sbjct: 1086 GIDPQFLPYVFEYFRQADSTTTRKFGGLGLGLAIVRQIVEMHGGTVKAESLGEDRGAIFT 1145

Query: 786  CRIP 789
             ++P
Sbjct: 1146 VQLP 1149


>gi|296422839|ref|XP_002840966.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637193|emb|CAZ85157.1| unnamed protein product [Tuber melanosporum]
          Length = 1164

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 15/240 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E    A+  K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  +   + 
Sbjct: 703 RETAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNIVHNLAN 759

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      L   +    +++A K +E  + +    D  + 
Sbjct: 760 SLLTIIDDILDISKIEANRMVMEEIPFSLRGTVFNALKTLAVKANERFLDLVYCVDNVVP 819

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              V D  RL Q+   ++ NA+ F+  G  V L   + +          F FSV + G  
Sbjct: 820 DHVVGDSFRLRQVILNLVGNAIKFTESGE-VKLTIRQHDQSRCSDKEYCFEFSVSDTGIG 878

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F+ F        R   G GLGLSI +  +NL GG V + S     +T    
Sbjct: 879 IQSDKLDLIFDTFCQADGSTTRKFGGTGLGLSISKKLVNLMGGDVWVKSEYGQGSTFYFT 938


>gi|253572573|ref|ZP_04849975.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251837988|gb|EES66077.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 419

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 181/387 (46%), Gaps = 27/387 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR-----LSPG 477
           +          ++    + +++    +   D    + N  + +L      +     +   
Sbjct: 30  LKASVMLRESNELT-SILQNINVYYLLIDRD--FIVHNTNYYTLNHLTPAQGERKKVGDL 86

Query: 478 THIRN-IAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLS---------DSV 525
            H RN IAA     + +     +  +I  +F +++  K L  +++LLS         D  
Sbjct: 87  LHCRNAIAAGECGKHEQCKLCCIRTSISKAFYEKQDFKKLDASMKLLSADEKTVISCDVS 146

Query: 526 LEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +  + + +   + M+ T  +VT+    +R L  + E    AD++K++F+ ++S+E+R+PL
Sbjct: 147 VSGAYLKINGEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPL 206

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ L+ T    +   ++  Y + IS ++  LL LVNDI DL+ +DAG++   YS 
Sbjct: 207 NAIVGFSGLMAT---ATSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSE 263

Query: 645 IVLNDLLNEVKQSIATKMHENNI-RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              NDLL E+K     +++EN +  +   +  +     +++QR++Q+ + +L NAM F+ 
Sbjct: 264 FDANDLLRELKGLFGMRLNENPLVTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTK 323

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
            G            +  F V + G  IPE+  + +F+RF       + +G GLGL++ + 
Sbjct: 324 TGEIRFGCHMEGTDEVCFYVSDTGIGIPEEEQEKIFSRFTKLD--REMQGTGLGLTLSQI 381

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            ++  GG   + S     +T    +P 
Sbjct: 382 IVHNLGGRCGVESEVGKGSTFWFILPL 408


>gi|153827163|ref|ZP_01979830.1| sensor histidine kinase [Vibrio cholerae MZO-2]
 gi|149738960|gb|EDM53278.1| sensor histidine kinase [Vibrio cholerae MZO-2]
          Length = 1147

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|16078417|ref|NP_389236.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309216|ref|ZP_03591063.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313544|ref|ZP_03595349.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318466|ref|ZP_03599760.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|321315107|ref|YP_004207394.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|81341919|sp|O31661|KINE_BACSU RecName: Full=Sporulation kinase E; AltName: Full=Sensor histidine
           kinase E
 gi|2633724|emb|CAB13226.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483886|dbj|BAI84961.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
 gi|320021381|gb|ADV96367.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 738

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 112/632 (17%), Positives = 243/632 (38%), Gaps = 48/632 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-EGIV 232
           +  +++   +  ++ S +  +FK LFD     +   D+ G  + AN+S+ K+ E     +
Sbjct: 133 VMRDISSKKILEREFSMNEQLFKDLFDRAVDGIVLFDKDGGFIDANLSFCKSFEINHNEL 192

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST-LEHGNNKSYKIVRVLNSFGEAGI 291
              ++ E       +    +  +   +      +   L  G  K ++     N      +
Sbjct: 193 SHLSLYEFIDSGSRKDFDNIWKALNRKGKAKGELPVKLRSGVQKLFEFTITSNIISGFYM 252

Query: 292 AI--DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           +I  D++++ ++  QL        EI  N   AI I+  +  +   N+S  +++E+ +  
Sbjct: 253 SIMRDITEKRSMELQLFKSEERFREIFENAMDAIIIWSNDGRIVKANQSACKIFELPMNL 312

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L       +L +FL  +     Q  +   K       +  E  +  + + NGQ   +  T
Sbjct: 313 LLKR----KLCDFLVDS-----QQKYSITKRKYAKYGEIRE--ELLFQMGNGQFKELEFT 361

Query: 406 SNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           S         + +  N++ +  +E +         +  +   +G  +F    RI  +NP 
Sbjct: 362 SKRTILENQHLTILRNVSDRKRMEKELRESELKFRKVFNGSMDGNVLFDNQYRIIDANPL 421

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              +       +   + +  I+A                A   +FD+    +   L    
Sbjct: 422 ASHILGLSHEEIKQHSLLDIISAYEIENLASP-------ARQINFDEMDNEIPFLLSSGD 474

Query: 523 DSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +  LE+S    +     +  F +VT+    E  L + +                +++E+R
Sbjct: 475 NRKLEFSFKRNIIQNMNLAIFKDVTERKELEERLRKSDTLHVVG-----ELAAGIAHEIR 529

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+T + GF  LLK    GS+    + Y   I++    + +++ + L LA   A    + 
Sbjct: 530 NPMTALKGFIQLLK----GSVEGDYALYFNVITSELKRIESIITEFLILAKPQA----IM 581

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y    +  ++ +    +  + + +N+++++     +     +  +L Q+F  IL NA++ 
Sbjct: 582 YEEKHVTQIMRDTIDLLNAQANLSNVQMQLDLIDDIPPIYCEPNQLKQVFINILKNAIEV 641

Query: 702 SSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
              G  + +     D    + S+K+ G  + ED  K +   F       + RG GLGL +
Sbjct: 642 MPDGGNIFVTIKALDQDHVLISLKDEGIGMTEDKLKRLGEPFY----TTKERGTGLGLMV 697

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               I  H G + + S +   T  +  +P ++
Sbjct: 698 SYKIIEEHQGEIMVESEEGKGTVFHITLPVRQ 729



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 102/277 (36%), Gaps = 22/277 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   +  +L     I++N   AI I D    +   N +   + ++D   L        +
Sbjct: 21  EENARLKKELNQHQVIVNNTLDAIFICDNEMRIVQANEATERMLQVDSEDLKKR----SV 76

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNPRGGTIW 414
           L+FL S  K    L+ K +       +K     K+     + G T ++   +    G  +
Sbjct: 77  LDFLFSIPKDELNLSVKKF-------FKKGFLWKEVPIRLDCGATKYIEFLAKRGIGEDF 129

Query: 415 MF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            F    +++ +  LE +++   ++  +  D   +G+ +F  DG    +N +F   ++   
Sbjct: 130 FFVVMRDISSKKILEREFSMNEQLFKDLFDRAVDGIVLFDKDGGFIDANLSFCKSFEINH 189

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           N LS  +    I +   + +      D     +      +  L   L      + E++I 
Sbjct: 190 NELSHLSLYEFIDSGSRKDF------DNIWKALNRKGKAKGELPVKLRSGVQKLFEFTIT 243

Query: 532 P-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             + +   M    ++T+    E  L +  E  R+  E
Sbjct: 244 SNIISGFYMSIMRDITEKRSMELQLFKSEERFREIFE 280


>gi|332527370|ref|ZP_08403426.1| two-component hybrid sensor and regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332111779|gb|EGJ11759.1| two-component hybrid sensor and regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 1201

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 91/510 (17%), Positives = 187/510 (36%), Gaps = 35/510 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +          +    L  +   +  FD           +++++    +       +DE+
Sbjct: 287 NAHAVAESVRANLAATLSAIPDLLFEFDAQGR-------YLDVYSGGSSTRLLYRDSDEI 339

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGT 412
           +   R    LP         E+I    +    +  T  L  G       +  T    G  
Sbjct: 340 IGR-RVGEVLPADAAAIVL-ESISVALRDGADYGRTMELDIGGQPHWFELSTTRKATGHV 397

Query: 413 IWMFENLTVQVDLET-----KYNTLVKVQGETIDHLSEGV---AVFGPDGRIKLSNPAFR 464
           + +  ++T +   E      +   ++  +   +  LS+      ++     ++ SN AFR
Sbjct: 398 LTLSRDITRRRAAEEALLQAREREVIAERDRRLRALSDAAPLPMLYLRGEVVESSNVAFR 457

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L+  +E+ L        +         E+       A+  +  +  +  +    +    
Sbjct: 458 ELFGVDEHELGSFDAWWRLVCP-DDAAREAMQRAWREAVERAAREGGRVHEIECRVRVRG 516

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            L+  ++           V + D    +RA      A           +  +S+E+R+P+
Sbjct: 517 GLDLVLLAGGQQLGDGMVVTLADITPLKRAQELAEAASAAKSAF----LATMSHEIRTPM 572

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG T L   ++   L+ +Q  Y++ I ++   LL  +NDILD + ++AG +++    
Sbjct: 573 NAIIGMTALALNTE---LSPRQRDYLQKIQSAGRSLLATINDILDFSKIEAGKLEIERRE 629

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSS 703
             L +++ EV   +A +     +   V    ++    V D  RL Q+   +  NA+ F+ 
Sbjct: 630 FDLEEVVGEVCDQLAARAAAKGLEFVVDLGPEVPRRLVGDPLRLGQVLLNLCGNAVKFTE 689

Query: 704 KGST-VILKAARD-NGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
           +G   V L+  R   G  +    V+++G  + E+    +F  F         +  G GLG
Sbjct: 690 QGGVCVRLRVQRQTEGQVLLRCAVQDSGIGLGEEQRSRLFQSFQQADSSITRRYGGTGLG 749

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCR 787
           L I +  + L GG + + S     +T    
Sbjct: 750 LVIAKRLVELQGGEIGVDSQPGVGSTFWFT 779



 Score = 52.6 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 84/275 (30%), Gaps = 31/275 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS-------YKKNT 226
           +   L E         +  +       ++  L++  D  G  L            Y+ + 
Sbjct: 278 LQDALGELRNAHAVAESVRANLAATLSAIPDLLFEFDAQGRYLDVYSGGSSTRLLYRDSD 337

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
           E  G    + +          + + +  +     ++  T+     G    +++     + 
Sbjct: 338 EIIGRRVGEVLPADA---AAIVLESISVALRDGADYGRTMELDIGGQPHWFELSTTRKAT 394

Query: 287 GEA-GIAIDVSKEITVNDQLTHTYEI---------LHNLTVAI---AIFDQNRYLQFHNR 333
           G    ++ D+++     + L    E          L  L+ A     ++ +   ++  N 
Sbjct: 395 GHVLTLSRDITRRRAAEEALLQAREREVIAERDRRLRALSDAAPLPMLYLRGEVVESSNV 454

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +F EL+ +D   L    S D     +   +   E +  + W+E +    +      +   
Sbjct: 455 AFRELFGVDEHELG---SFDAWWRLVCPDDAAREAM-QRAWREAVERAAREGGRVHEIEC 510

Query: 394 L---PNGQTLHVIVTSNPRG-GTIWMFENLTVQVD 424
                 G  L ++      G G +    ++T    
Sbjct: 511 RVRVRGGLDLVLLAGGQQLGDGMVVTLADITPLKR 545


>gi|301309818|ref|ZP_07215757.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300831392|gb|EFK62023.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 761

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 9/273 (3%)

Query: 524 SVLEYSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              E+    L +A          +N+ +    E  L    E   ++D +K++F+ ++S+E
Sbjct: 490 QWWEFRYGSLEDANDGYVINGLCLNIQNIKDTEGVLISAREKAEESDRMKSAFLANMSHE 549

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++L+  S+      ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M 
Sbjct: 550 IRTPLNAIVGFSNLM-NSEEVLEPEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMS 608

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             +    LN L+NE+  +    M E  + +++           D  RL Q+ S  ++NA+
Sbjct: 609 FVFDRHDLNVLINEIYCTFQLMMPE-GVELRMRVPEIPVIVAVDPYRLKQVLSNFINNAI 667

Query: 700 DFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            F++ G   +       GD     V++ G  IPE+  K VF+RF       Q  G GLGL
Sbjct: 668 KFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGL 725

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I +      GG + + S     +     +P +
Sbjct: 726 AICQVIAQRFGGEIQLKSEYGKGSRFTLTLPKE 758


>gi|107102594|ref|ZP_01366512.1| hypothetical protein PaerPA_01003658 [Pseudomonas aeruginosa PACS2]
          Length = 705

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRN 482
             E   +  + ++   +D +   V++   DGR+   N  +  SL  T E          +
Sbjct: 66  RTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDSD 125

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                           +      SF D    + G L  +   V  Y          M  +
Sbjct: 126 WVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQGRVLGLMNGW 185

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++T+  R  R L E      +A+  K+ F+  +S+E+R+P+  +IG  +L+      + 
Sbjct: 186 IDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVLQRL--AP 243

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             ++   +E    ++  L  L+ DILD+A +++G + L    + L  ++  V++      
Sbjct: 244 EQRERASLEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 303

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGD 718
            +  +R+ V  D   G   + D  R  Q+ S ++SNA+ F+ +G  V ++      D G 
Sbjct: 304 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERSLDEGR 362

Query: 719 FIFSV--KNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSIS 775
            I  V  +++G  I       +F  F+  A     + G GLGL+I    ++L GG V + 
Sbjct: 363 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQGGTGLGLAICRKLVDLMGGDVEMH 422

Query: 776 SSDEGVTTINCRI 788
           S     T ++  +
Sbjct: 423 SEPGKGTRVSLDL 435



 Score = 38.8 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +   L         LS  +++ + L D + + V  R   G +L  N +Y ++        
Sbjct: 57  LQLRLRRWQRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQA 116

Query: 234 QKAIGESRKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNNK---SYKIVRVLNSFG 287
           +  +       +    + M     + A       T   +  G       + +    +  G
Sbjct: 117 RGTLLTDSDWVEGSKARLMHQQCLAVARGGTASFTDMAVRIGGQLLEIHHWVTPYRDRQG 176

Query: 288 EAGIA----IDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
                    ID+++   +  QL            A ++F
Sbjct: 177 RVLGLMNGWIDITERERLARQLREAMRQADEANRAKSVF 215


>gi|237734078|ref|ZP_04564559.1| integral membrane sensor signal transduction histidine kinase
           [Mollicutes bacterium D7]
 gi|229382904|gb|EEO32995.1| integral membrane sensor signal transduction histidine kinase
           [Coprobacillus sp. D7]
          Length = 524

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 164/371 (44%), Gaps = 37/371 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D   K  +        +D + EG  +   D  + + N   + L+    + +     I++ 
Sbjct: 186 DTMKKLKSEQIKINGILDQMKEGFVLLDSDLTVLMVNRKAQKLYG---HTIKLNCSIKDF 242

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                          +F   I +  D     Q  +E+  +       +   +    L FV
Sbjct: 243 ---------------IFDFKIINALDHLSDEQQVVEVEKEKEFYNCYVAKVDYGVTLLFV 287

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+T+   A +              ++  F  +VS+EL++P+T+I G+++LL+T  +   +
Sbjct: 288 NITEQHNAMK--------------MRQEFFSNVSHELKTPMTSIRGYSELLETGVINDKD 333

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +   + ++ I      +  L+NDIL ++ ++   + +    + L  L++E+  ++  ++ 
Sbjct: 334 AS-KKALDKIHDEVNNMSTLINDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEID 392

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + +++  V  + +  ++ ++ Q + Q+ S +++NA+ ++  G  +I+K+ +   + I  V
Sbjct: 393 KKHLQ--VDKELEDITYTSNHQHMHQLLSNLITNAIKYNVDGGKIIIKSYQFGRNIIIEV 450

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I +     VF RF         +  G GLGL+IV+  +  + G+++++S     
Sbjct: 451 SDTGRGISKIDQGRVFERFFRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEG 510

Query: 782 TTINCRIPSKE 792
           TT    +P +E
Sbjct: 511 TTFKVTLPMEE 521


>gi|160938607|ref|ZP_02085959.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438306|gb|EDP16065.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC
           BAA-613]
          Length = 738

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 10/246 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +     +KA ++K  F+  +S+E+R+PL+ IIG T +  T    S  ++    + 
Sbjct: 212 EQELKDALNNAQKAFKVKKEFLSCMSHEIRTPLSIIIGMTKIAATHLDDS--NRIEDCLS 269

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ SS  L+ ++ND+LD++ ++ G + +N+    L  LL  +  +I  +  E  ++ + 
Sbjct: 270 KITFSSRHLMTIINDVLDMSKIEEGKLSVNHEPFQLQQLLEPLVATIYAQAEEQGLKFEC 329

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKN 725
            I +     ++ D  R+ QI   +LSN++ F+ KG  V L+              F  K+
Sbjct: 330 GIKNVPEAVYIGDCMRINQILLNLLSNSIKFTPKGGVVHLEVNPAPVVDGKTHLQFITKD 389

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + ++  K +F  F         +  G GLG++I  + + L GG + + S     TT
Sbjct: 390 TGIGMSDEYLKRIFKPFEQADSGTSRKYGGTGLGMAITYNLVKLLGGSIQVESKLGEGTT 449

Query: 784 INCRIP 789
               +P
Sbjct: 450 CTVVLP 455


>gi|95931145|ref|ZP_01313869.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132792|gb|EAT14467.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 798

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 141/299 (47%), Gaps = 19/299 (6%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           F  ++   +   KSLQ   + L   V E         +T        +     + L +  
Sbjct: 240 FCHMLKQIEKREKSLQQYSQGLETQVRE---------RTKDLQQTNDELHVTIQELDDAK 290

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +A ++A   K+ F+ ++S+E+R+P+  ++G  + L +     L+ + ++ V+ I +S   
Sbjct: 291 KAAQEASAAKSRFLANMSHEIRTPMIGVLGMAEQLMSR---DLDDQDAELVKTIYSSGES 347

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG- 678
           L  ++ND+LD++ ++AG ++L+       + L++  + +A    +  + +  ++   +  
Sbjct: 348 LQAILNDLLDISKIEAGKLELDLHQFTPIETLDQAVELLADNAFKKGLELTTVTHTAVPS 407

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDM 734
           +   D  RL QI   +LSNA+ F+  G  V+    L     +G+ I SVK++G  + +  
Sbjct: 408 TLTGDAGRLRQIILNLLSNAIKFTGDGHIVVDMNWLPTNTTSGNLIVSVKDSGIGLDDAA 467

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             ++F  F        R   G GLGL+IV+  + L  G +S+  +++  +     IP K
Sbjct: 468 KNNIFTAFTQADSSTSRKYGGTGLGLTIVKQLVGLMDGDISVRDNEDHGSIFTVTIPFK 526


>gi|326423961|ref|NP_761037.2| sensor histidine kinase [Vibrio vulnificus CMCP6]
 gi|319999339|gb|AAO10564.2| Sensor histidine kinase [Vibrio vulnificus CMCP6]
          Length = 805

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 114/241 (47%), Gaps = 11/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + +   K +F+  +S+E+R+P+  ++G   +L  +    LN +Q ++++ + 
Sbjct: 339 LEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLNEEQRKHLKTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G M+ + +    + ++  V     T   E  ++ KV + 
Sbjct: 396 DSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVYTT 455

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729
              G  + AD+ RL Q+   +L+NA+ F+++G  V +                VK+ G  
Sbjct: 456 VPTGRWYCADKARLRQVLFNLLNNAVKFTARG-LVEVYFEEHTREQANYLSIKVKDTGIG 514

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE   K +F  F        RR  G GLGL+IV+      GG V++SS     T     
Sbjct: 515 IPESAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSSQVGLGTCFTVE 574

Query: 788 I 788
           +
Sbjct: 575 L 575


>gi|149925387|ref|ZP_01913651.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
 gi|149825504|gb|EDM84712.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
          Length = 998

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 132/276 (47%), Gaps = 20/276 (7%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTE------KNEALRKADEIKNSFVQHVSYELRSP 583
           +I   N        ++  S R ++AL E      + E  +    IK+SF+ ++S+E+R+P
Sbjct: 286 LIRAFNRMIRSFQRDLEKSERVKQALEEVSLANVEKERAKNESRIKSSFLANMSHEIRTP 345

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G T L   +    LN KQ  Y+  I  S   LL+L+N ILDL+ +++ + KL   
Sbjct: 346 MNAILGMTAL---TLKTDLNEKQKDYLTKIQLSGDNLLHLLNSILDLSKIESDMFKLEQR 402

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-----LGSFVADRQRLLQIFSKILSNA 698
              L+D+L EV  ++     + NIR+     GK     L   V D  R+ QI   ++ NA
Sbjct: 403 PFRLDDVLEEVFGTLGNSALDKNIRLLYTLQGKGLQSTLNRLVGDSLRVGQILKNLIGNA 462

Query: 699 MDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           + F+S+G    +  +LK   D     FSV + G  + +D  + VF++F        R   
Sbjct: 463 IKFTSEGHINLTVKVLKQLDDQVTLQFSVSDTGIGMSKDQLQRVFDKFTQADSSTTRMFG 522

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGLSI +  ++L  G +   S+    +     +
Sbjct: 523 GSGLGLSIAKELVHLMEGDIHAHSTPGRGSVFYFTL 558


>gi|222054921|ref|YP_002537283.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564210|gb|ACM20182.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 909

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/579 (16%), Positives = 212/579 (36%), Gaps = 21/579 (3%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
            +         + AI  +    +       +    + ++  E  +    G     +  RV
Sbjct: 337 DELFSIAHPEDRPAIRSAFDALRRGASPYEMEHRIVRQDTGEVRTVKASGQYLRDRSGRV 396

Query: 283 LNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           +  +G      D++++    D+L          L NL   + I  +   + + N S   +
Sbjct: 397 VKIYG---FVQDITEQKRAEDELRKSEARLSTALDNLREGVVIATERGEVFYWNPSGWMM 453

Query: 339 WEIDLAFLATNP--SNDELLEFLRSANKLPEQLNWKTWK----ENIFSVYKSSETHKDTW 392
                           +++ +   +  ++     W   +    E + ++          W
Sbjct: 454 HGYANPEEGRRHLAEFEQIFQLSLADGRVLTLDEWPMLRIIRGEKVQNLELRLRRLDQEW 513

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
                 +  ++ T            ++T Q   E       +     I+H    +A+F  
Sbjct: 514 ERVVSYSGTILQTLGEERLVYLSICDMTEQRRAEEALQEREERLRIFIEHAPAALAMFDR 573

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
             R    +  + + +  E   L    H + +      ++ +     L   I+ + +D+  
Sbjct: 574 QMRYVHVSRRWLTDYDLEGRNLRGICHYQ-VFPEIPDHWRQVHARALAGEILRADEDQFV 632

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
              G+++ +   V  +       A  ++   ++T    AE+        L++++     F
Sbjct: 633 RSDGSIQWVRWEVRPWQDASGRVAGILVFSEDITHRKHAEQERERLITELQQSNAELQQF 692

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
               S++L+ P+  +  +  LL+    G L+ K   Y+ +I  ++  +  L+ND+L L+ 
Sbjct: 693 AYVSSHDLQEPIRMVTSYVQLLQKRYQGKLDEKAEMYISFIVEAAHRMSCLINDLLALSR 752

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           V  G  +  +  +    ++ E   ++   M E+  RI       L   + D  +LLQ+F 
Sbjct: 753 V--GRREREFMPVETELVVKEALDNLRFAMEESGARIT---KDTLPMVMGDPVQLLQLFQ 807

Query: 693 KILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            +L NA+ +  K  T  V + A R    ++F + +NG  I     + +F  F     R +
Sbjct: 808 NLLGNAIKYRKKEVTPEVHISAERKKNQWLFGIHDNGIGIEPQYHERIFVIFQRLHQREE 867

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +G G+GL+I +  +  HGG + + S     +T    +P
Sbjct: 868 YQGTGIGLAICQKIVENHGGRIWVESKPGLGSTFFFSLP 906



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 76/526 (14%), Positives = 160/526 (30%), Gaps = 58/526 (11%)

Query: 43  LLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV----WDGKDETPEIIGQ 98
            L+ Q    AK++             L +  +LL E   L+      WD   +      +
Sbjct: 266 WLVHQ---TAKRLFRADEAKRSALTALQRTQALLLEAERLSHTGAWEWDLTSDIWTFSDE 322

Query: 99  LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE-----TQNDCAI 153
             +               +         +  A + LR+    +++        T     +
Sbjct: 323 WQRLHGTRDRSLRPDELFSIAHPEDRPAIRSAFDALRRGASPYEMEHRIVRQDTGEVRTV 382

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           K  G+     +  R++ + G   ++ E      +L    +      D+L   V    + G
Sbjct: 383 KASGQYLRDRSG-RVVKIYGFVQDITEQKRAEDELRKSEARLSTALDNLREGVVIATERG 441

Query: 214 DILWANIS------YK-------KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           ++ + N S      Y           E E I              E    R+I    ++ 
Sbjct: 442 EVFYWNPSGWMMHGYANPEEGRRHLAEFEQIFQLSLADGRVLTLDEWPMLRIIRGEKVQN 501

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA----IDVSKEITVNDQLTHTYEIL---- 312
                    +           +L + GE  +      D++++    + L    E L    
Sbjct: 502 LELRLRRLDQEWERVVSYSGTILQTLGEERLVYLSICDMTEQRRAEEALQEREERLRIFI 561

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            +   A+A+FD+       +R ++  ++++   L          E       +P+     
Sbjct: 562 EHAPAALAMFDRQMRYVHVSRRWLTDYDLEGRNLRGICHYQVFPE-------IPDHWRQV 614

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVDL 425
             +     + ++ E   D +   +G    V     P         G +   E++T +   
Sbjct: 615 HARALAGEILRADE---DQFVRSDGSIQWVRWEVRPWQDASGRVAGILVFSEDITHRKHA 671

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGR--IKLSNPAFRSLWKTEENRLSPG--THIR 481
           E +   L+    ++   L +   V   D +  I++     + L K  + +L      +I 
Sbjct: 672 EQERERLITELQQSNAELQQFAYVSSHDLQEPIRMVTSYVQLLQKRYQGKLDEKAEMYIS 731

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
            I     R    S   +   A+      ER+ +    EL+    L+
Sbjct: 732 FIVEAAHRM---SCLINDLLALSRVGRREREFMPVETELVVKEALD 774


>gi|33323031|gb|AAQ07255.1| putative sensor kinase PK4 [Oryza sativa Japonica Group]
          Length = 653

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 13/242 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  + +    A   K SF+ ++S+E+R+PL  IIGFT+LL  +    L+ +Q  +++ +
Sbjct: 162 ELLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLSGT---PLDKQQQAFIQDV 218

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL +VNDILDL+ +++G + L      L   L  V   +  K  +  +   +  
Sbjct: 219 QTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKTAD-GVEFNLYL 277

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNG 727
           D +L   +  D+ RL QI   +  NA+ F+++G  V +         D+    FSVK+ G
Sbjct: 278 DAELPDVITGDQGRLNQIMVNLAGNALKFTNEGE-VTISVKNKGETEDSYTIRFSVKDTG 336

Query: 728 SSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP++  +S+F RF         +  G GLGLSIV+  + LH   + + S +   +   
Sbjct: 337 IGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGSEFF 396

Query: 786 CR 787
             
Sbjct: 397 FT 398


>gi|71907451|ref|YP_285038.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847072|gb|AAZ46568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 582

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 9/248 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  ++E       E     ++ K+ F+  +S+E+R+P+  I+G   L+  S+L     +Q
Sbjct: 179 ERKQSEEEALRAKEIAEAENQAKSRFLTTMSHEIRTPMNGILGMAQLMLVSRL--TEQEQ 236

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +   I  S   LL L+NDILD + ++AG ++L  +      +++E     A       
Sbjct: 237 HDHARTILNSGQSLLALLNDILDFSKIEAGKLELTPAVFSPRQIVDEAATLFAESAKAKG 296

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIF 721
           + I+ +  G +   ++AD  RL Q+ + +++N++ F+  G   I    ++   D     F
Sbjct: 297 LVIEAVWHGPIDQRYLADPMRLRQMLANLINNSIKFTGSGFVRIEGREIEPMADASLLEF 356

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV ++G  IP +    +F  F        R   G GLGLSIV +   L GG   + S   
Sbjct: 357 SVTDSGIGIPPEKLTLLFRPFSQADSSTTREYGGSGLGLSIVHNLAKLMGGDAGVESEPG 416

Query: 780 GVTTINCR 787
             +    R
Sbjct: 417 KGSRFWFR 424


>gi|299149224|ref|ZP_07042284.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512658|gb|EFI36547.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 541

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 107/517 (20%), Positives = 212/517 (41%), Gaps = 47/517 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              N     +++IL NL   I + D   +    + N+       I     A   ++ E+ 
Sbjct: 45  KKTNHSYRFSFDILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEE-AIGHTDYEIY 103

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGTI 413
              R          ++   + +    K     ++ +  P+G    T+ V    +  G   
Sbjct: 104 GEERGE-------KYRHIDKELIQAGK-VYRKEEKYTTPDGITHDTIAVKSIISWEGEKK 155

Query: 414 WMF---ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           W+     ++T   + E +           +K Q   +  +  G+     + R+      +
Sbjct: 156 WLLATRWDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRV-----QW 210

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +              I    S   NE  G   F   I      R ++      + +
Sbjct: 211 EETRQIASLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTI-----RVDN 265

Query: 524 SVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              E +  P+   +        +L F N+T+ ++ ++ L E  E   +++ +K++F+ ++
Sbjct: 266 VDFEVTATPVFGDEKETEIIGGLLRFENITEKLKMDKMLQEAKEKAEESNRLKSAFLANM 325

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF++++  ++       + ++V+ IS+++ +LL L++DILDL+ ++AG
Sbjct: 326 SHEIRTPLNAIVGFSEMVCQTEEEEE---RKEFVKIISSNNILLLQLIDDILDLSKIEAG 382

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   +N+L+  + + +  K    +I+I             DR RL Q+     +
Sbjct: 383 TMEFTFAQTDINELMEGICRQMQEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTN 442

Query: 697 NAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           NA+ F+ KGS  +  +      +  F VK+ G  IP D    VF RFV        +G G
Sbjct: 443 NALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSF--IKGTG 500

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+I    +   GG + + S +   +    RIP  E
Sbjct: 501 LGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPRSE 537


>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
 gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
          Length = 717

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 10/268 (3%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E + + +   Q   +     +  +    L    +    A+  K+ F+  +S+E+R+P+  
Sbjct: 156 EQNYLKIQEQQRNYSETLQAEIRQQTAELRAAKKEAEAANIAKSEFLAAMSHEIRTPMNG 215

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIGFTD+L  +    L+ +Q ++ + I  S++ LL+L+NDILD + V+AG + L      
Sbjct: 216 IIGFTDMLLDT---GLDEEQQEFAQTIKRSASALLSLINDILDFSKVEAGKLDLECIPFD 272

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG 705
                 +V   +  K+    I +    D  L +  + D  R  Q+   ++ N+  F+ KG
Sbjct: 273 PEITAQDVCDLVRPKVASRPIEVLCRIDDTLPANVMGDPGRYRQVLVNLMGNSAKFTKKG 332

Query: 706 STVILKAARDNGDFIFS----VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
              +  A  D  +   +    +++ G  IPE+  +S+F  F        R   G GLGLS
Sbjct: 333 ELELAIAVDDETEETITLHARIRDTGIGIPEEKLESIFEAFRQADGSTTREYGGTGLGLS 392

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCR 787
           I      L  GHV   S  +  +T +  
Sbjct: 393 ICRKIAALMHGHVWAESELDVGSTFHFT 420


>gi|303246719|ref|ZP_07332997.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492059|gb|EFL51937.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 625

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 16/266 (6%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T +   +VT+  +A+  LT  +EA    +  K++F+ ++++E+R+P+  I+G  +L   +
Sbjct: 89  TRIWLRDVTEFKKAKTELTAAHEAALAGERAKSNFLANITHEIRTPMIGILGMAEL---T 145

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L SKQ +Y+E    S+  LL ++NDI+D A ++ G ++L  +   L   + E    
Sbjct: 146 LATELTSKQREYLEMARHSAQSLLTVLNDIVDYARIEVGALELAKTPFDLFATVEEAVSV 205

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                 + N+ ++    G +    V D  RL QI   ++ NA+ F+  GS V+       
Sbjct: 206 FRPLAVKKNLSLEYRFLGDVPQNLVGDASRLRQILINLVGNAVKFTDSGSVVLAICPEPE 265

Query: 717 GD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
                     FSV++ G  IP D   ++F+ F         + +G GLGL+IV   + + 
Sbjct: 266 KQSPGKVGLCFSVRDTGIGIPRDKIPAIFDSFTQADVSPARRYQGAGLGLAIVRHLVEMQ 325

Query: 769 GGHVSISSSDEGVTTINCR----IPS 790
           GG   + S +   +  +C     +P+
Sbjct: 326 GGEYGVESEEGQGSIFSCTMEFGLPA 351


>gi|288957536|ref|YP_003447877.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909844|dbj|BAI71333.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 423

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 95/404 (23%), Positives = 162/404 (40%), Gaps = 15/404 (3%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
             V     P GG   +  +L  +     +   L +     +D  +E  A+F  + R+  +
Sbjct: 3   WRVAAGPTP-GGLCAVLTDLGPETSSIAE--ALAENLTAALDLSAESFALFDHEDRLVHA 59

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GT 517
           N   +    T  +RL PG     +A   +         +  AA I +  D    L+    
Sbjct: 60  NERLKRDLPTIADRLVPGVPFEELARGFALADPRLATEEERAAWIAARLDRHHRLEPPMV 119

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFV------NVTDSVRAERALTEKNEALRKADEIKNS 571
           + L     L      +P    +          N       E            A   K++
Sbjct: 120 VPLADGRWLLSREHAVPGGVLVHYTDVTMLKLNEERLRLREAEARAARGEAEAASRAKSA 179

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDL 630
           F+  +S+ELR+PL  ++GF+++L T   G L N +   YV  I  + T LL L++DIL+L
Sbjct: 180 FLAQMSHELRTPLNAVLGFSEMLLTEAFGPLGNPRYRSYVGDIRDAGTHLLALIDDILEL 239

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +D G M +    + L+ L   V  ++     E  + ++      L     D Q L Q+
Sbjct: 240 SRLDGGGMPMAAEGVDLDMLSLRVVTALREAAAEGGVIMRREVAPDLPLLQGDAQSLTQM 299

Query: 691 FSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            + +LSNA+  +  G  V+L A    +G     V + G  IP      + + F       
Sbjct: 300 LTNLLSNAVTHTRPGGEVVLTAHLMPDGGIGVMVADTGVGIPTADLPRILDPFDPPDSTI 359

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            R   G GLGL IV+  + +HGG + ++S     T++    P++
Sbjct: 360 ARNSCGTGLGLPIVKRLVEMHGGRMELTSQPGVGTSVVLVFPAE 403



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 5/147 (3%)

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQL--THTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           +++       G   +  D+  E +   +    +    L     + A+FD    L   N  
Sbjct: 3   WRVAAGPTPGGLCAVLTDLGPETSSIAEALAENLTAALDLSAESFALFDHEDRLVHANER 62

Query: 335 FVELWEIDLAFLATNPSNDELLE-FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
                      L      +EL   F  +  +L  +     W       +   E       
Sbjct: 63  LKRDLPTIADRLVPGVPFEELARGFALADPRLATEEERAAWIAARLDRHHRLEP-PMVVP 121

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLT 420
           L +G+ L     + P GG +  + ++T
Sbjct: 122 LADGRWLLSREHAVP-GGVLVHYTDVT 147


>gi|162450950|ref|YP_001613317.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161161532|emb|CAN92837.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 637

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 104/643 (16%), Positives = 210/643 (32%), Gaps = 45/643 (6%)

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
                       +  +L    ++ + + DS    +      G IL +  +  + +    +
Sbjct: 7   SAEEGAADALKRQLAELGGAEALLQAILDSTSDCILVISPEGTILLSGRALPRASSASLL 66

Query: 232 VFQ--KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
                + I    +       +R++ S A +   C       H      K+  +L     A
Sbjct: 67  RTSIYEHIAPETREAARSCVERVVRSGASDSCECTIPGEHGHAARYEVKVSPILRGGRVA 126

Query: 290 GIAI---DVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFVELWEID 342
            + +   DV++       L  + E   +    L   I + D +  ++  N S   +  + 
Sbjct: 127 TLLVICADVTERRATEAALRRSEERYRSVIAALDEGIVLQDASGSIEACNASAERILGLT 186

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQT 399
            A +A   S D     +           +           ++    K+     H P G  
Sbjct: 187 SAEMAGRESRDPRWRAVHEDG-----APFDGDLHPAIVTLRTGAPQKNVIMGVHRPEGDM 241

Query: 400 LHVIVTSNPR--------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
             + + S P            +  F ++T +   E +     +    T +  + G+    
Sbjct: 242 AWISINSQPLLRPSESIPYAVVTSFHDITERKRSEEELRRSEERFRATFNQAAVGIGQVS 301

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
            +GR    N  F  L       ++     + I       ++  +   + +  + +   E+
Sbjct: 302 VEGRWLRLNEKFCDLVGYSHAEMTN-LTFQQITYPPDLPHDIENVRRILSGEVQTASREK 360

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           + ++   EL+     + ++  + +A     +  V      +R            +E +  
Sbjct: 361 RYVRKGGELV---WTKVTVSLVRHASGAPAYFVVIAEDITDRK---------HVEETRQE 408

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKT-----SKLGSLNSKQSQYVEYISASSTILLNLVND 626
           F+   S+EL++PLT ++     L               +    +E + A    L  LV +
Sbjct: 409 FLTIASHELKTPLTPVMLRVQALLRMYRRAGGPPPAAEEVIPKLEAVEALLGRLHRLVEE 468

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ + A  M +    + L+ LL ++    A  +      + V +   L     D  R
Sbjct: 469 LLDISQITAAPMTVAPEEVDLSALLRDILSGHAPLLRRAACPVTVDAPTALRGHW-DPVR 527

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L QI S +LSNA  +   G  V +           +V++ G  I     + +F  F    
Sbjct: 528 LEQIISNLLSNASKYGG-GKPVDVALEASGDMARLTVRDRGIGIAAADHERIFRCFQRAT 586

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 G GLGL IV       GG V + S           +P
Sbjct: 587 TSRHYSGFGLGLWIVREAAEAMGGAVRVESRLGEGARFTVELP 629


>gi|158335032|ref|YP_001516204.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158305273|gb|ABW26890.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1514

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 11/243 (4%)

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             +  EA   A + K+ F+ H+S+ELR+PL  I+G+ ++++      L   Q++++  I  
Sbjct: 850  QQSKEAADAASQAKSDFLAHMSHELRTPLNAILGYVEIMQRDP--QLGETQTEHLGIIGR 907

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S   LL+L+ND+L+++ ++AG + L   +  L  LL+ ++  +  K     +++      
Sbjct: 908  SGEHLLSLINDVLEMSRIEAGQLALTQVSFDLYRLLDSLQDMLEAKAKLQGLQLYFERSA 967

Query: 676  KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG------DFIFSVKNNG 727
             +  FV AD  +L Q+   +L N ++++ KG  ++ +     +G         F+V + G
Sbjct: 968  TVPQFVFADEGKLRQVLINLLGNGLNYTEKGQVLLQVDTPEQSGQPGRACQLTFAVMDTG 1027

Query: 728  SSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
              I       +F  F         + G GLGL I   F+ L GG + + S+    +T   
Sbjct: 1028 PGIKASDVDQLFEAFTQTDSGYRAQEGTGLGLPISRRFVQLMGGDIEVDSTVGQGSTFRF 1087

Query: 787  RIP 789
             IP
Sbjct: 1088 TIP 1090


>gi|148548845|ref|YP_001268947.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148512903|gb|ABQ79763.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 1210

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 168/383 (43%), Gaps = 13/383 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E   N  +      ++     + V   +G +K  N ++    +   +++    
Sbjct: 560 IRQRQCAERALNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSDQVIGRK 619

Query: 479 HIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              ++ A   +    ++D   + AA      D    ++G    +   +L Y         
Sbjct: 620 LNDSLFADSEQARQIQADYQKVMAAGSPLIKDRPLRIKGRELTIYHWILPYRDSLGEVQG 679

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKT 596
            +  ++++++  +    L +  +    A+  K++F+  +S+E+R+P+  +IG  +L +K 
Sbjct: 680 IIGGWIDISERRQLVMELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKR 739

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +  G ++      +E    S+  LL L+ DILD+  +++G + L    + L  L+  V +
Sbjct: 740 ADQGRVD---RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVAR 796

Query: 657 SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  +  + ++V I+       + D  R  Q+ S ++SNA+ F+  G   I  +  D
Sbjct: 797 IFDGQARQKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRICVSLLD 856

Query: 716 NGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLH 768
           +G          V+++G  I  D  + +FN F+      +G R G GLGL+I  +   + 
Sbjct: 857 DGTSTPAVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMM 916

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG +S+ S ++  T +  ++P +
Sbjct: 917 GGSLSMKSLEDVGTQVRLKMPLQ 939



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L++ ++  + L +     ++ RD+ G +   N SY +  +      
Sbjct: 556 LRLQIRQRQCAERALNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSD-- 613

Query: 234 QKAIGE--SRKLFKEEIKKRMISSS-----ALEKNFCETVSTLEHGNNKS--YKIVRVLN 284
            + IG   +  LF +  + R I +      A      +       G   +  + I+   +
Sbjct: 614 -QVIGRKLNDSLFADSEQARQIQADYQKVMAAGSPLIKDRPLRIKGRELTIYHWILPYRD 672

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   +  +L    +   +   A + F
Sbjct: 673 SLGEVQGIIGGWIDISERRQLVMELRQAKQQADDANRAKSTF 714


>gi|218528525|ref|YP_002419341.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218520828|gb|ACK81413.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 786

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 141/770 (18%), Positives = 259/770 (33%), Gaps = 102/770 (13%)

Query: 90  DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
                    L  +         L+  E WL++     L      L        L    ++
Sbjct: 10  SARARADTILGIQRTTGTAQARLIRAETWLRYALPALLVVFMLTLLGVA---ALQMRGRH 66

Query: 150 DCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
           D A+++  R   + A L  L+L    S  AET L+     + +   + +           
Sbjct: 67  DEAMRVATREVEAFARLSALALSNA-SFAAETRLERVLPVHLLPAGREVL--------VI 117

Query: 210 DQAGDILWAN---------ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
              G I  A            Y  + E   I+ + A   +  L             A   
Sbjct: 118 GPGGRIRAAYPAPAPAETFAGYLADGEPIAILGESAGAMTVNLQAGGQAVVAARRLADGM 177

Query: 261 NFCETVSTLEHGNNKSYKIVR---------VLNSFGEAGIAIDVSKEITVNDQL-----T 306
                V   E   +  +++            L   G A   I  ++     D++      
Sbjct: 178 GEVAVVQRFEPLADNWWRMFGHHAVSLSAIALVLAGMATAYILQTQRAQAADEVCDLVKQ 237

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
                L      +  +D  R   F + S   L            S  ++   L +     
Sbjct: 238 RLDTALGRGRCGLWDWDIARGTIFWSDSMYALLGYTPE--KDLLSFGDVNALLHA----- 290

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-------NPRGGTIWMFENL 419
           E  +  +   ++ + + + + H+      +G+ + +   +       +     + +  ++
Sbjct: 291 EDGDLYSLARHLAASHATVD-HEFRIRDASGEWIWLRTRAEIVEDAVDGSRHLVGIAMDV 349

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T Q  L     T      + ++ +SE   ++    R+ L N  FR L         PG  
Sbjct: 350 TEQRRLAEFTATADMRLRDAVEAVSEAFVLWDASNRLVLCNSKFRDLHALASEDAVPG-- 407

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPNAQ 537
                    R Y+E  G      +        +    T  +EL     L+ S     +  
Sbjct: 408 ---------RRYDEIMGRGALPPVRRGIPGSERGPSRTFEVELTDGRWLQVSERRTKDGG 458

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKA-------------------------------- 565
            +    ++T   R +  L      L +                                 
Sbjct: 459 YVSVGTDITSLKRHQEQLVTSERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARA 518

Query: 566 ---DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILL 621
              ++ K+ F+ ++S+ELR+PL  I+GF +L+++   GSL + + + Y   I  S T LL
Sbjct: 519 EIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLL 578

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           ++++DIL ++ ++A  +KL    I L   L      +A +    ++ I +   G L   +
Sbjct: 579 SVIDDILHMSRIEAKRVKLVRRDIDLGTALTAALTLVAKEAASKSVSIDLELAGTL-HVL 637

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD + L QI   I+ NA+ F+ +   V L+    NG     + + G  IP+     +   
Sbjct: 638 ADERALQQILLNIIQNAVKFTPERGRVALRGRSCNGFVHLFIGDTGIGIPKTAISKLGRP 697

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F           +G GLGL+I  S   LHGG + I S +   T +  R+P
Sbjct: 698 FEQVETNLTRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLP 747


>gi|117618949|ref|YP_856744.1| two-component system sensor protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560356|gb|ABK37304.1| two-component system sensor protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1060

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 15/245 (6%)

Query: 555 LTEKNEALRKAD-----EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           L+   E L + +      +K  F+ ++S+E+R+P+  I+G   LL+    G L+  Q   
Sbjct: 330 LSRHREQLAQQEAARLARVKGDFIANMSHEIRTPMNAIMGLAYLLEQ---GGLDDGQRAL 386

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  +   LL ++NDILD + +++G ++L      L ++L+ V   ++T +   ++ +
Sbjct: 387 VRKIHQAGQALLGIINDILDFSKIESGRLELEQVPFSLEEVLDHVAAIMSTCVGNKHLEL 446

Query: 670 KVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN-GDFIFSVK 724
            V S   +    V D  RL Q+   +  NA+ F+ +G     V L+A +D     +F V+
Sbjct: 447 VVSSAPEQAAHLVGDALRLEQVLLNLTGNAIKFTERGEVEVRVELEAEQDGMATLLFRVR 506

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +   ++FN F        RR  G GLGL+I    +NL GG + ++S     +
Sbjct: 507 DTGIGIPPEQQANIFNAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGDIGVTSELGKGS 566

Query: 783 TINCR 787
               R
Sbjct: 567 EFWFR 571


>gi|315646641|ref|ZP_07899758.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315277967|gb|EFU41288.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 484

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 125/238 (52%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    + + +++++K+ F+  +S+ELR+PLT+I G+++ L +        +    ++ I+
Sbjct: 231 LNYMAQEIVRSNQVKDDFISSISHELRTPLTSIKGWSETLDSGGYDP--EETKIGMQIIT 288

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L+ LV ++LD + +    MKL    + L +LL E+  ++ TK  +  I+IK++SD
Sbjct: 289 KETDRLIGLVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKKGIQIKLVSD 348

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K      D  RL Q+F  I+ NA+ FS +   + L    +    I +VK++G  I ++ 
Sbjct: 349 EK-PIIYGDANRLKQVFLNIVDNAVKFSHENGAINLSFTIEEKFVIVTVKDHGIGISDEH 407

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + V +RF          G GLGL+I +  I LHGG + + S     T++  ++P  E
Sbjct: 408 LRRVKDRFFQVNPLN--GGTGLGLAITQQLIELHGGAMEMESELGQGTSVIVKLPLPE 463


>gi|188579782|ref|YP_001923227.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179343280|gb|ACB78692.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 786

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 119/633 (18%), Positives = 229/633 (36%), Gaps = 73/633 (11%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-GNNKSYK 278
            +Y +   ++      A GE      E      ++  A  +    T    +  G     +
Sbjct: 125 AAYPRPAPSDTFASYLAEGEPIAFLGESAGAMTVNLQAGGQAVVATRRLADGLGEVAVLQ 184

Query: 279 IVRVLNS--------------------FGEAGIAIDVSKEITVNDQL-----THTYEILH 313
               L +                     G A   I  ++     D++           L 
Sbjct: 185 RFEPLTANWWRMFGHHAISLSAIGLVLAGMATAYILQTQRAQAADEVCDLVKQRLDTALG 244

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
                +  +D  R   F + S   L            S  ++   L S     E  +  +
Sbjct: 245 RGRCGLWDWDIARGTIFWSDSMYALLGYTPE--KDLLSFGDVNALLHS-----EDGDLYS 297

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-------NPRGGTIWMFENLTVQVDLE 426
              ++ + + + + H+      +G  + +   +       +     + +  ++T Q  L 
Sbjct: 298 LARHLAASHATVD-HEFRIRDASGDWIWLRTRAEIVEDALDGSRHLVGIAMDVTEQRRLA 356

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
               T      + ++ +SE   ++    R+ L N  FR L   +     PG     I   
Sbjct: 357 EFTATADMRLRDAVEAISEAFVLWDAGNRLVLCNSKFRDLHALDSEDAVPGRRYDEIMGR 416

Query: 487 CSRYYNESDGWDLFAAIITSFD-----------DERKSLQGTLE---------------- 519
            +                 +F+            ER++  G                   
Sbjct: 417 GALPPVRRGIPGAERGTSRTFEVELTDGRWLQVSERRTKDGGYVSVGTDITSLKRHQEQL 476

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           + S+  L  ++  L  ++  L       +  AER L ++      A++ K+ F+ ++S+E
Sbjct: 477 VASERELIETVKDLKRSRRTLETQTQQLADLAERHL-DQKARAEIANQAKSEFLANMSHE 535

Query: 580 LRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           LR+PL  I+GF +L+++   GSL + + + Y   I  S T LL++++DIL ++ ++A  +
Sbjct: 536 LRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHMSRIEANRV 595

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           KL    I L+  +      ++ +    ++ I +   G L + +AD + L QI   I+ NA
Sbjct: 596 KLVRREIGLDAAIAAAVTLVSKEAASKSVAIDIELAGTL-NVLADERALHQILLNIIQNA 654

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGL 756
           + F+ +G  V L+    NG     + + G  IP+     +   F           +G GL
Sbjct: 655 VKFTPEGGRVALRGRSCNGFAHLFIGDTGIGIPKAAISKLGRPFEQVETNLTRSYKGSGL 714

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+I  S   LHGG + I S +   T +  R+P
Sbjct: 715 GLAIARSTAELHGGSLRIRSEEGVGTLVLVRLP 747


>gi|108759236|ref|YP_635471.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108463116|gb|ABF88301.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 842

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 4/226 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +KN F+  VS+ELR+PLT+I G   LL+   +G +  +    V     ++  L+ L+N
Sbjct: 350 ERMKNEFISTVSHELRTPLTSIRGSLGLLEGGIVGDIPPQALDMVRIARTNTERLIRLIN 409

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DILDL  ++AG ++L  ST    DL+     S+        + +     G      ADR 
Sbjct: 410 DILDLEKMEAGKLELKVSTPECADLVESAFASVRGMADGAGVSLHAEVTGT-PQVKADRD 468

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           RL+Q+ + ++SNA+ FS +G+ V ++    ++G   FSV + G  I ++    +F RF  
Sbjct: 469 RLVQVLTNLVSNAVKFSPQGAGVTVRVGEEEDGRVRFSVVDQGPGISQEQRARLFGRFQQ 528

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 R   G GLGL+I ++ +  HG  +++ S +   +T    +
Sbjct: 529 LDSSDTRSKGGTGLGLAISQAIVEQHGSRITVESEEGRGSTFTFTL 574


>gi|329851250|ref|ZP_08266007.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840096|gb|EGF89668.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 799

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/520 (18%), Positives = 201/520 (38%), Gaps = 41/520 (7%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAI--FD-QNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             +   ++   T E++ ++   +    FD ++  + + ++ F  +  +      + P   
Sbjct: 149 AIMRAREEDQKTLELVEDIA-GVGQWSFDVKSGRVVWSDQVF-RIHGLP--ITESAPDYS 204

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNPRGG 411
           ++L             +  T    +    K+ + +  +     PNG   +V+  +    G
Sbjct: 205 DVLALYDEN-------DASTLARLVERAAKTGKGYTLEARIRRPNGAFRNVVAKAETLRG 257

Query: 412 -------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                     +F+++T       K             ++   +  +  D + + +N A+ 
Sbjct: 258 ADGDVETIHGVFQDVTDYRMATEKARKSEARYRLLASNMPGMLGHWDSDLKCRFANNAYL 317

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             +    + L  G H++ +        NE       +    +F+       G L      
Sbjct: 318 EWFGRTPDEL-IGVHLKTVLGEELFALNEPFIRRALSGEKQTFERAISKASGALGYTLTQ 376

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD-------EIKNSFVQHVS 577
            L             +   ++TD    E AL++ N  L  A        EIK  F+  +S
Sbjct: 377 YLPDLDEDGRVRGFFVLVTDITDLKLKELALSDSNAQLIAARHQAEAALEIKAQFLATMS 436

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PLT I+G+  LL   +   L+ + + +V+ I  +   LL L+ND+LD++ ++AG 
Sbjct: 437 HEIRTPLTTILGYAGLL--GEQDDLSQEAAAFVKRIGKAGRTLLALINDVLDVSRLEAGQ 494

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILS 696
           + L    + +++L  E+ +    +    N+++ +  D +L  + + D  RL Q+ + ++ 
Sbjct: 495 VTLTQQAVNVHELARELVEQFQMQASTRNLKLNLDYDEELPEWQLIDDTRLTQVLNNLVG 554

Query: 697 NAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
           NA  F+S G  + +                V + G  +  +    +F RF         +
Sbjct: 555 NACKFTSDG-VISISMRAVENLAGTRMRVEVGDPGPGLTTEQTGKLFKRFQQLDAGINRK 613

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGL+I    I L  G + + SS    +T    +P 
Sbjct: 614 HGGSGLGLAICAEIIKLMQGEIGVVSSVTAGSTFWFEVPL 653



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 142/426 (33%), Gaps = 55/426 (12%)

Query: 35  LTTIIPIILLIR----QRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKD 90
           L   +  ++ +R       ++ +   E    L  + D            +   +VW   D
Sbjct: 130 LAAAVSSVMAMRKDAMANIAIMRAREEDQKTLELVEDIAGVGQWSFDVKSGR-VVWS--D 186

Query: 91  ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150
           +   I G L      P   +D+L+       +    L++  E+  K G+ + L A  +  
Sbjct: 187 QVFRIHG-LPITESAPDY-SDVLALY---DENDASTLARLVERAAKTGKGYTLEARIR-- 239

Query: 151 CAIKIEGRVSGSCAFLRILS-----LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL 205
                   V      LR        + G++ ++ +  +  +K     + +++L  ++  +
Sbjct: 240 RPNGAFRNVVAKAETLRGADGDVETIHGVFQDVTDYRMATEKARKSEARYRLLASNMPGM 299

Query: 206 VWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
           + H D      +AN +Y +       E  G+  +  +GE      E   +R +S      
Sbjct: 300 LGHWDSDLKCRFANNAYLEWFGRTPDELIGVHLKTVLGEELFALNEPFIRRALS------ 353

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI-----DVSKEITVNDQLTHTYEILHNL 315
                      G  ++++   +  + G  G  +     D+ ++  V        +I    
Sbjct: 354 -----------GEKQTFE-RAISKASGALGYTLTQYLPDLDEDGRVRGFFVLVTDITDLK 401

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA--TNPSNDELLEFLRSANKLPEQLNWKT 373
              +A+ D N  L           EI   FLA  ++     L   L  A  L EQ +   
Sbjct: 402 LKELALSDSNAQLIAARHQAEAALEIKAQFLATMSHEIRTPLTTILGYAGLLGEQDDLS- 460

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            +E    V +  +  +    L N     V+  S    G + + +      +L  +     
Sbjct: 461 -QEAAAFVKRIGKAGRTLLALIN----DVLDVSRLEAGQVTLTQQAVNVHELARELVEQF 515

Query: 434 KVQGET 439
           ++Q  T
Sbjct: 516 QMQAST 521


>gi|315180156|gb|ADT87070.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
          Length = 579

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 8/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    +   +A++ K+ F+  +S+ELR+PL  ++G  DLL+       ++ Q   +E 
Sbjct: 194 RELKVAQQLAEQANQSKSQFLAMMSHELRTPLNAVLGLIDLLRDDS----DAYQQDMLEQ 249

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+ +LL ++NDILDL+ +++G  +L    I L+  L    +  +      +I   V 
Sbjct: 250 MENSAELLLVIINDILDLSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDITFNVK 309

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +   +   +  D  RL QI   I+ NA+ F+  G  V +            VK++G  I 
Sbjct: 310 ASICEQFEYWVDSVRLTQILFNIIGNAIKFTHHG-FVDVSLVTARDRLEIEVKDSGIGID 368

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + +F+ F+           G GLGL+I +  + L GG +++SS     +     IP
Sbjct: 369 NERIEHLFSPFIQADTSITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSLFTISIP 428

Query: 790 SK 791
            +
Sbjct: 429 LQ 430


>gi|160941698|ref|ZP_02089025.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613]
 gi|158435195|gb|EDP12962.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613]
          Length = 1301

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 10/239 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                     + K  F+  +S+E+R+PL  I+G T + +   +     +  + ++ +  S+
Sbjct: 918  MKARADAVSQAKTDFLSRMSHEIRTPLNAIVGMTSIARN--VADDRDRVLECLDKLETSN 975

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGK 676
              L++L+NDILD++ +++G M+LN   + + D +  ++  +  +  +  +R  V +   +
Sbjct: 976  QYLISLINDILDMSRIESGKMELNVQPMDMEDFVRSLEGMMRPQAEQKGLRFIVENRCCQ 1035

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIP 731
              + V DR RL Q+   I+ NA+ F+ +G  VI     + G        FSVK+ G  I 
Sbjct: 1036 GLALVTDRLRLEQVLINIIGNAVKFTGEGGDVIFSITPEEGSSGGQRLTFSVKDTGIGIA 1095

Query: 732  EDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +   S+FN F            G GLGL+I    + + GG + + S     +     +
Sbjct: 1096 SEAMDSIFNAFEQAEKNTSVKYGGTGLGLAISSRLVQMMGGTLGVRSVLGEGSEFYFTL 1154


>gi|302340321|ref|YP_003805527.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637506|gb|ADK82933.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 862

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 124/261 (47%), Gaps = 12/261 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                       R+ER L         A+  K  F+ ++S+E+R+P+  I+GFT++L+  
Sbjct: 345 VWNWVTADEMRKRSERELRRAKNEAESANRTKTIFLANMSHEIRTPMNAILGFTEILEAE 404

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +    + ++ +Y+E I++S T LL ++ND+LDL+ V+A  + L      +  L+ E++  
Sbjct: 405 ER---DPRRRKYIEAINSSGTTLLAIINDLLDLSKVEADKIVLKPEPTDITSLMEELRYI 461

Query: 658 IATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
            A    + ++ + V I+     + + DR RL QI   ++ NA+ F++ G   +++   + 
Sbjct: 462 YAPLAEKKHLILDVEIATATPEALLIDRTRLRQILVNLVGNAIKFTTVGGVRIVINTWKQ 521

Query: 716 NG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
           +      D    V ++G  I     + +F  F         +  G GLGL+I      L 
Sbjct: 522 SEESTSVDLRIDVADSGPGIAVSDQERIFGIFEQGEVAWDRKYGGTGLGLAISRRLSTLM 581

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +S++SS       +  +P
Sbjct: 582 GGTISLTSSPGEGAIFSIELP 602


>gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 948

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 190/487 (39%), Gaps = 45/487 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N        S + L       +   P   +   +        E +  K+
Sbjct: 239 SLPMGVTIIDENG------HSLISLTG-PDGIIKAEPRWMQERSWFGYTPGFRELVLKKS 291

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              +  S+  S               L+ I+ +   G  ++    +  +           
Sbjct: 292 LPPSSLSIVYSV-PVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ 350

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 351 RLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQII 406

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I  L +  T        
Sbjct: 407 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST-------- 448

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 449 -RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 504

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 505 DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 565 LGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRD 623

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 624 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 683

Query: 784 INCRIPS 790
              RIP 
Sbjct: 684 FTLRIPL 690


>gi|16124840|ref|NP_419404.1| sensory box histidine kinase [Caulobacter crescentus CB15]
 gi|13421786|gb|AAK22572.1| sensory box histidine kinase [Caulobacter crescentus CB15]
          Length = 716

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 102/515 (19%), Positives = 191/515 (37%), Gaps = 51/515 (9%)

Query: 311 ILHNLTVA-IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           +L       I+ +D    L   + ++  +    +A  A   +     +F+   +      
Sbjct: 76  MLEQAPDDLISHYDLTGRLLRVSPAWSRIIGGSVAEAAGRRT----WDFIAPED---HPA 128

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQ 422
               + + +      S   +       G    +     P         G + +  ++T Q
Sbjct: 129 VAAYYADLLREGAAPSSRLRMRVRHVAGDIRVLESRPMPIRNAEGVVTGFVDIARDITEQ 188

Query: 423 VDLETKYNTLVKVQGET--------------IDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           ++ E +Y   +    E                +   +        G+I  ++ +   L  
Sbjct: 189 IETERRYQLALAQAHEARERAEASEWRLRLLAESAQDLTVQVDASGKILYASSSADRL-- 246

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS------ 522
              N    G    ++                 A    S  D+R SL   L  LS      
Sbjct: 247 GLANLAQEGASFMSLVHPDE----TERAATFIAGAFESRGDKRPSLDTELRFLSVDGDYR 302

Query: 523 ----DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                  LE     +P A T  TF ++TD    E +L         A   K++F+ ++++
Sbjct: 303 WMEGKGWLERDADGVPVALT-STFRDMTDRHSLEESLIAARVRAEAAVRAKSAFLANMTH 361

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PLT++IGF + ++     +L+       + ISA    LL+ +NDILD + +++G +
Sbjct: 362 ELRTPLTSVIGFAEQIQAEP--ALSPTVRHASDRISAGGRALLSTINDILDFSKLESGGV 419

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSN 697
            +  +   +N L+ E    ++ +     + +       LG   A D Q + Q+   ++ N
Sbjct: 420 SIVTAATEVNGLIAETVALLSVQADRKGLSLSYDGSAVLGLCAALDSQHVRQVLLNLIGN 479

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A+ F+ +G   +     D+G    +V + G  I ED  + +F RF        RR  G G
Sbjct: 480 AIKFTEQGGVTVTAQRNDDGMLEIAVADTGIGIAEDHLERLFGRFSQVDDTIARRFGGSG 539

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGL+I        GG + +SS+    +T    +P 
Sbjct: 540 LGLAIGRFLAEAMGGEIQVSSTVGRGSTFTLTLPL 574


>gi|313149766|ref|ZP_07811959.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
 gi|313138533|gb|EFR55893.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 501

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 160/389 (41%), Gaps = 11/389 (2%)

Query: 409 RGGTIWMFEN-----LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           +GG + ++E+     + V +    +  T   V    +         F  +  + + +P +
Sbjct: 112 QGGIVGIYESGRLIKMIVYLRNVLEERTQRHVLNIALSKTHIFSWSFDMERNLMVIDPRY 171

Query: 464 RSL--WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLEL 520
                  T++  L+       +     +   ++    L   +  +    R +   G  E 
Sbjct: 172 FDYLKIPTQDYTLTMEQFSDLVHPDDRKVLFDALAGQLTGNLYEAPVPYRLRRGDGGWEW 231

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                     +     + +   ++       E  L +     +++D +K++F+ ++S+E+
Sbjct: 232 FEGQSTYVGQLSDLPFRIVGICMSTQRHKDIEDRLNDALRKAQRSDRLKSAFLANMSHEI 291

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+GF+ LL + +         +Y   I  +  +L+ L++DILDL+ +++  M+ 
Sbjct: 292 RTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIEKNGQLLMFLISDILDLSKIESNTMEF 351

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N S   LN +  ++ +     +    + +      +  S  AD  RL Q+ + +++NA+ 
Sbjct: 352 NVSVFSLNKMFADIARMQRLNVKP-GVELIADLPAEDVSITADPVRLEQVVNNLINNAIK 410

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           F+S+GS  I    R   D    V++ G  + E++   VF RF         +G GLGL+I
Sbjct: 411 FTSRGSIRIGYRRRGEKDVELFVEDTGKGMSEEVIAHVFERFYKGDSF--VQGTGLGLAI 468

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++ +   GG +   S           +P
Sbjct: 469 CKTIVEHFGGEIRAESEVGEGARFEVCLP 497


>gi|260779140|ref|ZP_05888032.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605304|gb|EEX31599.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 797

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 184/478 (38%), Gaps = 41/478 (8%)

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKL-------PE--QLNWKTWKENIFSVYKSSETH 388
           LW I  +                            PE    + ++W  ++      + + 
Sbjct: 92  LWPIPYSIEEGKAYKSLFFNRASDGQIDQVFSWDNPESGGYDKESWYTSVVGKPMGTVSW 151

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
              +  P    + +I  S+P           TV + LE    +LV    +  +    GV 
Sbjct: 152 SQVYIDP-FTHVQMITASSPYYVDDVFAGVATVDISLE----SLVAFVRKHAEEYELGVV 206

Query: 449 VFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           +    G  I   N  F+ +     +    G     I    +        +DL + +    
Sbjct: 207 LKDSYGDVITEHN--FQVVEGIYISSTDFGDFKWYIDVVNANRLVTEQVYDLVSKVEAGI 264

Query: 508 DDER------------KSLQGTLELLSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                           + L   + +++  V   +E  II L           +    +  
Sbjct: 265 IPIMLACVMMGYFLINRFLISPIVIIAQKVDDSIEGGIIDLRYNSQDEIKHLIETFNQKT 324

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L  + +  + + + K++F+  +S+E+R+P+  ++G   +L  +    L+ +Q ++++ 
Sbjct: 325 VFLEAEKQKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKT---DLSEEQQKHMKT 381

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   ++ L+N+ILD + ++ G ++L  +   L  ++  +     T   E  ++ KV 
Sbjct: 382 LYESGDHMMTLLNEILDFSKIEQGHLELENNPFPLEAIIGSINSVYFTLCSEKGLQFKVY 441

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGS 728
           S+      +++D+ RL QI   +L+NA+ F+S+G   V  K     G       V++ G 
Sbjct: 442 SEVPPDRWYMSDKARLRQILFNLLNNAVKFTSRGYVEVYFKEVEKQGQNYLEIKVRDTGI 501

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            I ++  + +F  F        RR  G GLGL+IV+   +L  G V+++S     T+ 
Sbjct: 502 GIAKEAQQKIFKPFEQAESSTTRRFGGTGLGLAIVKQLCDLMNGSVTLTSELGIGTSF 559


>gi|242372584|ref|ZP_04818158.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           M23864:W1]
 gi|242349801|gb|EES41402.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           M23864:W1]
          Length = 610

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 156/399 (39%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 228 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRV 287

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++N     +    +  +  G ++  +    + +       D       SF  +    +G
Sbjct: 288 RIANDMALKMLGLAKEDV-IGYYMLGLLNLENEF-----SLDEIQENNDSFLLDINEEEG 341

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +       +++S I             + D    ++            +  +  FV +V
Sbjct: 342 IIVR-----VKFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 385

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+        S   Q++      +  ++ LVND+L L+ +D  
Sbjct: 386 SHELRTPLTSMNSYIEALEGGAWQD-ESLAPQFLSVTREETERMIRLVNDLLQLSKMDNE 444

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    I  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 445 SDQITKEIIDFNMFINKIINRHEMAA--KDTTFVREIPQQTIFAEIDPDKMTQVFDNVIT 502

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 503 NAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 562

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 563 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 601


>gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio angustum S14]
 gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium angustum S14]
          Length = 1114

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +AA   S  D  + ++GT        L  S   +  +      +  T +   E++L    
Sbjct: 371 WAAEKASGGDLDQVIEGTERSDEIGRLAISFSRMQRSIREKIGLIKTQNDELEQSLKIIK 430

Query: 560 EA---LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +    L+ AD++K+ F+   S+ELR+PL  ++G  + L     G +   Q + +E I  S
Sbjct: 431 QKNNELQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVKDSQRRQLEMIINS 490

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L NLV+D+LD   +  G + ++   I L+  +  V +  +  +    +RI       
Sbjct: 491 GQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQIPAN 550

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L    AD QRL Q+   ++ NA+ ++S+G  +I+ A          V + G  IP +  +
Sbjct: 551 LPLVDADEQRLEQVLYNLVGNAIKYTSEG-KIIISATVLEQQLRVQVVDTGQGIPSEQLE 609

Query: 737 SVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F   +         R+G GLGLSI    I L GG + +SS     TT +  +
Sbjct: 610 HIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMIGTTFSFTL 663



 Score = 38.0 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + +  +  +E             +D  +E +     +GRI+  N A   L+K    +L
Sbjct: 837 LQQEIHRREQVEISLIEAQSRLLGLLDSTNEAIICVQSEGRIRYVNSAAGKLFKRSPEQL 896

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
              T    IAA      N+S  ++   + I   +DE ++L 
Sbjct: 897 ERHTISDIIAAELPISINDSHHYNGKLSFI--INDEIQTLS 935


>gi|170737057|ref|YP_001778317.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169819245|gb|ACA93827.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1120

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 157/389 (40%), Gaps = 22/389 (5%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGP-DGRIKLSNPAFRS 465
           GG  WM   +        + ++L++        I      + V     G I L N   +S
Sbjct: 385 GGAFWMNREVI--RPSRERLHSLLEGEAFSRSIIQVAPVSLTVVARKSGAILLQNAEAQS 442

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L     ++    +   N+ A          G    + +++ F+ E              V
Sbjct: 443 LQMAFASQGEKDSSPDNVLARAGALVRFHAGSAGHSGVVSRFEME----------PDLEV 492

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                    +   ++  V++      ER L E     +     K  F+  +S+E+R+PL 
Sbjct: 493 AYAQAKYRGDDVFVIGMVDLAKRKEIERRLRESRARAQAESHEKGMFLATMSHEIRTPLH 552

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             +G  +LL       L  +Q   +     S   LL+L+N +LDL+ ++AG   L     
Sbjct: 553 GALGNLELLSRM---GLTQEQRSRLLIAQDSFGSLLSLINGVLDLSRIEAGEFLLQEQPQ 609

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSK 704
            ++ L+ +  ++ A    +N +R+  + D  L G+++ D  R  QI + ++ NA+ F+S 
Sbjct: 610 HIDQLVEQASRTFAADAQKNGVRLLCLIDPALRGTWICDGYRFTQIVTNLIGNAVKFTSH 669

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
           G+  +   + + G     V ++G  IPED  + +F  +V  +   +  R G GLGLS+ +
Sbjct: 670 GAITVSLGSTEIGQVRLRVADSGRGIPEDEIEKIFMPYVQGSAGPKSSRAGTGLGLSLCQ 729

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 GG ++  S     +     +P +
Sbjct: 730 KIAERMGGSITAESEVGVGSIFTVVLPLR 758


>gi|319946569|ref|ZP_08020803.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641]
 gi|319746617|gb|EFV98876.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641]
          Length = 448

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 141/381 (37%), Gaps = 30/381 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENR 473
             +L+  + L         K     + ++++GV      G+I L N  A + L    E  
Sbjct: 75  INDLSEVIRLTHENLEQETKRLTSILSYMTDGVLATNRRGQIILVNEMAAKQLNVVVEEV 134

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           ++    I ++      Y       ++    I S D+  + +   +         +++I  
Sbjct: 135 MNI--SILDLLGISEEYELRDLITNVPELTIDSQDENGEYISLRVR--------FALIRR 184

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +         + D+   ++            +  +  FV +VS+ELR+PLT++  + + 
Sbjct: 185 ESGFISGLVAVLHDTTEQDKE-----------ERERRLFVSNVSHELRTPLTSVKSYLEA 233

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L    +        ++V+     +  ++ +V D+L L+ +D    +L+         +  
Sbjct: 234 LDDGAIS--EPVAPEFVKVSLTETNRMMRMVTDLLSLSRIDNETSQLDVELTNFTAFITF 291

Query: 654 VKQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +        ++  E    I             D  ++ Q+   IL+NA+ +S  G  + +
Sbjct: 292 ILNRFDKMKSQAGEKKYDIVRDYPISPVWVEIDTDKMTQVLDNILNNAIKYSPDGGEIRV 351

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
                +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  H
Sbjct: 352 GMKTTDAQLIISISDEGLGIPKKDLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQH 411

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G +   S     +T    +P
Sbjct: 412 KGFIWAKSEYGKGSTFTIVLP 432


>gi|262403756|ref|ZP_06080314.1| sensor protein TorS [Vibrio sp. RC586]
 gi|262350260|gb|EEY99395.1| sensor protein TorS [Vibrio sp. RC586]
          Length = 967

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 139/313 (44%), Gaps = 15/313 (4%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +A       +  D       +  S    ++ LQ   E L + V           +T  
Sbjct: 391 DELAEMGQAIAHARDTAKALKVVAESEVRAKRELQQHKEHLEELV---------EQRTHQ 441

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                    +      +      +A   K++F+  +S+E+R+P+  ++G   LL+ +   
Sbjct: 442 LSDMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQET--- 498

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL S Q  YV+ I+ S   LL ++ND+LD + ++AG ++++ +   L  L+ E  + + +
Sbjct: 499 SLTSTQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQS 558

Query: 661 KMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +  E  I+++   +DG    +  D  R+ Q+ + ++ N + F+ +G   + +        
Sbjct: 559 RALEKGIKLRYQFADGVTQFWQGDEIRIGQVLNNLVGNGIKFTEQGEVCIQICQDPAGQG 618

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F V+++G  I ++   S+F+ F    A R ++ G GLGL+I    +   GG + +SS 
Sbjct: 619 IRFEVQDSGIGIAQEEQASLFDAFTQAEAGRRKQGGTGLGLAISRKLVQAMGGEMRLSSE 678

Query: 778 DEGVTTINCRIPS 790
               +  +  +P 
Sbjct: 679 QGQGSCFSFTLPL 691


>gi|39656317|gb|AAR29881.1| putative histidine kinase HHK2p [Cochliobolus heterostrophus]
          Length = 2013

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 26/279 (9%)

Query: 525  VLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +LE S+    + +T   T  ++ D    E+ L E  +        K+ F+ ++S+E+R+P
Sbjct: 1254 LLEKSLAETSDEETWYGTATDINDHKLLEQTLKETMD-------AKSKFLSNMSHEIRTP 1306

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  I G  + L  S    LN++Q ++V  I AS+  LLNL+NDILDL+ V+AG++KL+  
Sbjct: 1307 LNGISGMVNFLLDSV---LNTEQLEHVNIIKASTDSLLNLINDILDLSKVEAGMIKLSME 1363

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
             + L  LL EV         +  + +  + D  +      D+ R+ Q+   ++ NA+ F+
Sbjct: 1364 WLHLPSLLEEVNDLNMGLAIQKGLELNYLVDEGVPAEVKGDKFRIRQVLLNVVGNAIKFT 1423

Query: 703  SKGSTVILK-----------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
              G  + ++              +     F V + G    +   K +F RF     +   
Sbjct: 1424 EHGE-IFIRCKLQPSDRSRPLKENETMIRFEVVDTGQGFTDAEAKYLFKRFSQIDASSTR 1482

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+I   F+ LHGG +   S+    +T    I
Sbjct: 1483 QHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 1521


>gi|190890429|ref|YP_001976971.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190695708|gb|ACE89793.1| probable two-component sensor histidine kinase protein [Rhizobium
            etli CIAT 652]
          Length = 1257

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 104/503 (20%), Positives = 200/503 (39%), Gaps = 36/503 (7%)

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
             +  L VA+ I   +  L   N  F+ L                 L+ LR    +   L 
Sbjct: 764  TVDQLPVAVLIHVGDA-LMHANPEFMRLTGYSS------------LDALRDVGGIEALLQ 810

Query: 371  WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF------ENLTVQVD 424
             +  +EN            D    P    L  +   +     + +       E  T    
Sbjct: 811  RRDLEENAAGSGTMMLVKADDTLTPVTARLQSVRWEDANALMLALMPVAGKEEARTEAGR 870

Query: 425  LETK----------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             E +              V+     ++  ++GV V G +G I+  N +  +L+  +E   
Sbjct: 871  SEARPERMVEKVAKLQVEVEELRSILETATDGVVVIGIEGDIRSMNRSASALFNYDEQE- 929

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
            + G     + A  S+         L    + S  ++ + + G         L  ++  L 
Sbjct: 930  TRGKPFVMLFAHESQKAVLDYLHGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGRLT 989

Query: 535  NAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            ++        ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D+
Sbjct: 990  SSNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDM 1049

Query: 594  LKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            +   + G + + +  +Y   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++
Sbjct: 1050 MAGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVS 1109

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            E    +  + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +++  
Sbjct: 1110 EAVALVQPQANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVST 1169

Query: 713  ARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768
            + + NG  +  V++ G  +           F   +    R    G GLGL + ++ ++ +
Sbjct: 1170 SYEANGSVVLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDAN 1229

Query: 769  GGHVSISSSDEGVTTINCRIPSK 791
                SI+S+    T +    PS+
Sbjct: 1230 RATFSINSAPNEGTLVEITFPSQ 1252


>gi|88857764|ref|ZP_01132407.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
 gi|88820961|gb|EAR30773.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
          Length = 650

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 118/663 (17%), Positives = 241/663 (36%), Gaps = 82/663 (12%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDILWANISYKKNTE 227
            S + +  E     L+ ++++     +K+LFD+    +   D   G  +  N +  +   
Sbjct: 4   RSYNFLEDENKRLKLELEQITFERDKYKMLFDASADALSIIDLNSGKFVECNQAAVEMHG 63

Query: 228 TEGIVFQKAIGESR--KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------- 278
                    +  S    LF+   +       A  +      + L    +           
Sbjct: 64  IASKADFLTLIPSDLSPLFQPCGRPSEDMGKAYLEKALHDGAQLFQWTHTRLDGSIFPCL 123

Query: 279 IVRVLNSFGEAG----IAIDVSKEITVNDQL------------------THTYEILHNLT 316
           +      F E      I  D++  I   D+L                        +    
Sbjct: 124 VSLTAIHFNETCLVLVIGRDITALIETQDKLSAALTEIKRYEHAYLKEKQKFETFVDLAP 183

Query: 317 VAIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           V IAI  FD N    + NR F      ++  L    +  +  E    + +  EQ      
Sbjct: 184 VGIAINAFD-NGAFNYVNREFSRFTGYNVDEL----NEMDYWELTPQSYQAQEQE----- 233

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTS------NPRGGTIWMFENLTVQVDLETK 428
           + N+ S       +K  +   NG T  V+++       +       + ++++ Q  +E +
Sbjct: 234 QLNLLSDTGRYGPYKKEYTHKNGHTYPVLLSGIKITDEHGNNVIWSVVQDISQQKTIEDQ 293

Query: 429 Y-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR-------L 474
                   +   +      D    GV  +       + +     L+              
Sbjct: 294 LIEAKKQADASNRTMQLANDSAGIGVWEWDLTTNALVWDDWMYKLYGISAKTFTGAFEAW 353

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +   H  +I    +   +   G   +     +   D   ++L+ + E+L D   +    P
Sbjct: 354 TNSVHPDDIEGAKAELESAVAGLGEYNPEFRVVHPDGCVRTLKASAEILKDECGQ----P 409

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +     +    +VT+ V A   L +   A   A + K+ F+ ++S+E+R+P+  I+G   
Sbjct: 410 IK---VVGVNYDVTEKVIAMNTLAKAKLAAENAAKAKSDFLANMSHEIRTPMNAILGGLQ 466

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL++++   L       ++  + S+  LL ++NDILD + +++  ++L  +   L D+++
Sbjct: 467 LLQSAQ---LEDNLRIILDNATYSAQSLLTIINDILDYSKIESNKLELEQAPFSLVDVVD 523

Query: 653 EVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGS---TV 708
            VK  +  ++    +   V  D + +  +V D  R+ QI   ++SNA+ F+  G    T+
Sbjct: 524 SVKYDLDAQISNKGLDFVVTIDERFVDGWVGDFVRVKQILLNLVSNAVKFTHNGHVELTI 583

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
                 D      +V ++G  + E+  + +F RF        R   G GLG+SI  + + 
Sbjct: 584 DYTRYHDQQAVCINVIDSGIGMNEEAQQKIFERFSQADTSTTRQYGGTGLGMSITSNLVA 643

Query: 767 LHG 769
           L G
Sbjct: 644 LMG 646


>gi|16126905|ref|NP_421469.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235688|ref|YP_002518125.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13424253|gb|AAK24637.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220964861|gb|ACL96217.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 690

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 148/376 (39%), Gaps = 21/376 (5%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           L  +     +      D  ++ +++    GR    N A        E  L          
Sbjct: 183 LAEQALETSRNLSNFFDVSADLLSISNMQGRFVKVNRA-------WETALGYPIEALEGV 235

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPNAQTMLTF 542
                 + E              DDE             S   LE+      +       
Sbjct: 236 PFLPLLHPEDQQSTRVQINRIEVDDEVNGFVNRYRRADGSYCQLEWRARRCDDL-VFGVA 294

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT+ +R +  + E  +A   A+  KN F+ ++S+E+R+PL  +I     L  +    L
Sbjct: 295 RDVTERLRIQAEMAEARDAAEAANRAKNDFLANMSHEIRTPLNGVIALAAALDET---PL 351

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            SKQ++ V  I  S   L  LV+DILD++ ++AG M L      L  L++ +      + 
Sbjct: 352 TSKQAEMVAMIRRSGETLERLVSDILDVSKIEAGQMTLQPQAFDLGALVDGLLDVTRLRA 411

Query: 663 HENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            E  + +++  S    G F+ D  R+ Q+ S + SNA+ F+ +G  ++     + G+   
Sbjct: 412 KEKGVAVRLERSPTAAGGFLGDSVRIGQVLSNLFSNAVKFTDQGEVIVRVDVEEAGNGQA 471

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                 V++ G     +  + +F RF        RR  G GLGLSI ++ + + GG ++ 
Sbjct: 472 ARLFVEVEDTGVGFDAEKAEMIFQRFNQADSTITRRFGGSGLGLSISKTLVEMMGGEITA 531

Query: 775 SSSDEGVTTINCRIPS 790
            SS    +     +P 
Sbjct: 532 QSSPGAGSLFRVTLPL 547


>gi|260599137|ref|YP_003211708.1| hybrid sensory histidine kinase BarA [Cronobacter turicensis z3032]
 gi|260218314|emb|CBA33302.1| Signal transduction histidine-protein kinase barA [Cronobacter
           turicensis z3032]
          Length = 919

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTDLTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISV 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSV--KNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  I+   R   N      V  ++ G 
Sbjct: 395 RHDVPDNVIGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|237653315|ref|YP_002889629.1| ATP-binding region ATPase domain protein [Thauera sp. MZ1T]
 gi|237624562|gb|ACR01252.1| ATP-binding region ATPase domain protein [Thauera sp. MZ1T]
          Length = 913

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L   NE L++ D +K+ F+  V++ELR+PLT+I   ++++       +  +Q  ++
Sbjct: 666 ATAELRAANERLKELDRLKDDFMSSVTHELRTPLTSIRALSEMMLDDPDIDVEDRQR-FL 724

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I + +  L  LVN +LD+A +++G  + + + I L +L+     +      +    + 
Sbjct: 725 GIIVSEAVRLSRLVNQVLDMAKIESGHAEWHNTDIDLCELVRHSGDATLQLFRDRGAELH 784

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNGSS 729
           +     + +  AD  RLLQ+   +LSNA  F   G   V +  + D      +VK+NG  
Sbjct: 785 LHLPESVPTLRADHDRLLQVMLNLLSNAAKFVPTGSGRVDVTLSCDGERLRVAVKDNGPG 844

Query: 730 IPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           I       VF +F        R +G GLGL I    +   GG + + S      T +  +
Sbjct: 845 IEPAQQPVVFEKFRQGGDERSRPQGTGLGLPISRQIVEHFGGRLWLESVPGEGATFSFEL 904

Query: 789 PSK 791
           P K
Sbjct: 905 PLK 907


>gi|119468956|ref|ZP_01611981.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7]
 gi|119447608|gb|EAW28875.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7]
          Length = 886

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 132/314 (42%), Gaps = 9/314 (2%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           + N         +     DL  ++    DDE   L      + + +  Y          +
Sbjct: 318 LLNPIELLGAASHRVGDGDLAVSLPAHTDDEVGILFNDFNHMVNQIRHYQQQLEEYKHHL 377

Query: 540 --LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                            L        +A+++K+ F+ ++S+E+R+PLT I+GFT+ L  +
Sbjct: 378 EDKVESRTQALESMNSQLELAITQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHN 437

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                +    Q++  I  +S  LL L+N+ILDL+ ++A  + +  +++ +  L+++++  
Sbjct: 438 DKIVND---KQHLSTILRNSKHLLELINNILDLSKIEAEKLAVEQASVNVVQLVHDIESI 494

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
           I     E  + + +I D  +  +   D  RL QI   + +NA+ F+ +G   + +     
Sbjct: 495 ITPLAQEKRLELNIIFDLPIPQTIYTDVTRLKQILINVANNAVKFTEQGHVSICVHYHAK 554

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           +    F + + G  + E     VF  F        RR  G GLGL I ++  NL GG + 
Sbjct: 555 SNLIEFVITDTGIGMSEHQISRVFKPFEQADATTTRRFGGTGLGLCISKNLANLLGGDIK 614

Query: 774 ISSSDEGVTTINCR 787
           + S     +  +  
Sbjct: 615 LESEVGEGSEFSIS 628


>gi|168022780|ref|XP_001763917.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162684922|gb|EDQ71321.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 379

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 121/261 (46%), Gaps = 18/261 (6%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +   +  +A   L    +   +A   K+ F+ ++S+E+R+P+  I+G T LL  S    L
Sbjct: 1   MRTLELRKANEELQVSQKKAEQASHAKSDFLANMSHEIRTPIHGILGLTALLLES---DL 57

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +  Q++ ++ +   + +LL+++N +LDLA ++AG +++      +  +++   + +  + 
Sbjct: 58  SPDQTESLQSVKECADLLLHIINSVLDLAKIEAGRLEVEKVPFNIRKMVSSTFRMLQARA 117

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
            +  +++    D  +  + + D  +L Q    ++ NA+ F+ +GS V +     N     
Sbjct: 118 QQRGLKLLWEVDKSVPQTLMGDVGKLQQCLLNLVGNALKFTHEGS-VTVSVILTNDTTTA 176

Query: 719 --------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                     F V++ G  I +++   +F  F        R   G GLGL IV+ F+ L 
Sbjct: 177 QDAPDTMFVEFEVRDTGIGISQEILLDMFKPFKQADASTSRLYGGTGLGLCIVQRFVELL 236

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +   S     +  +  +P
Sbjct: 237 GGTIWAESEVGKGSAFHFLLP 257


>gi|90578600|ref|ZP_01234410.1| hypothetical protein VAS14_02823 [Vibrio angustum S14]
 gi|90439433|gb|EAS64614.1| hypothetical protein VAS14_02823 [Vibrio angustum S14]
          Length = 700

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 152/339 (44%), Gaps = 16/339 (4%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           F  +             + N   +C  +    + + LF   +TS   ++   +     LS
Sbjct: 214 FWEIDVDYNFTYISEPQVANTQISCDNFIEFFNNYPLFQNKLTSKLSQQVVFEDLEWNLS 273

Query: 523 ----DSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
               +    +S  P  +          T  N+T   +    L E  +    A++ K+ F+
Sbjct: 274 VDNTEQWYSFSGTPYFDKYGKLQGFRGTAKNITSRKKRLFDLQEAQKQAETANKAKSQFI 333

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+PL  ++G   L+++  L  LN+KQ+ ++  +  S+ +LL ++NDILDL+ +
Sbjct: 334 AMMSHEIRTPLNAVLG---LMESLSLSGLNNKQNLWLSQMDQSAHLLLAIINDILDLSRI 390

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           ++G  +L  S I + + +  V   +A +  +NN++ +   D  +      D+ R+ Q+  
Sbjct: 391 ESGSFRLFNSDINVVESIRLVADQLAPQAAKNNVQFQCEIDDAIPKQIYGDKNRIAQVLF 450

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQ 750
            ++ NA+ F+S GS   +   + + +   +V + G  I +D   ++FN F         +
Sbjct: 451 NLIGNAVKFTSIGSV-RVVVRKVDDNIEIAVIDTGIGIAKDAQANIFNPFHQADGSITRR 509

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G GLGL+I +  I    G +S+ S     +     IP
Sbjct: 510 YGGTGLGLAISQHLIEKMNGTISLESELGTGSCFKVSIP 548


>gi|78042954|ref|YP_361359.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995069|gb|ABB13968.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 445

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 6/244 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +     RA     EAL + ++++   +  +++ELR+PL+ + G  +LL    + +   
Sbjct: 204 NDEIGELARAFNRMAEALERNEKLRRQMIADIAHELRTPLSILQGNFELLLEKVIEADEE 263

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
                 E        L  LV ++ +L+  +AG +K+    + +N   +EV     +    
Sbjct: 264 TLRSLAE----EVKRLSRLVEELRELSLAEAGELKILPVEVEVNQFFSEVAAPFTSLAEA 319

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            +I  +     K   +  D  R+ Q+   +L+NA  ++ +G  V L+    +G  +  V 
Sbjct: 320 KSISFETTLPAKGEKYSFDPDRMKQVVYNLLTNAFQYTGEGGKVKLEVKLLDGKLLIEVT 379

Query: 725 NNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +    +F RF     +      G GLGL+I +S +  HGG + + S+    T
Sbjct: 380 DTGPGIPPEDLPYIFERFYRGEKSRSRTTGGSGLGLAIAKSLVEAHGGKIWVESTVGQGT 439

Query: 783 TINC 786
           T   
Sbjct: 440 TFKV 443


>gi|85113126|ref|XP_964471.1| hypothetical protein NCU02815 [Neurospora crassa OR74A]
 gi|1354473|gb|AAB01979.1| Os-1p [Neurospora crassa]
 gi|28926254|gb|EAA35235.1| hypothetical protein NCU02815 [Neurospora crassa OR74A]
          Length = 1298

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 159/380 (41%), Gaps = 24/380 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ ++++E K   L  +  ETI+++ + +++F  + +    +     +   + +     
Sbjct: 569 DMSRKIEVEAKGEIL--ILKETINNMVDRLSIFCNEVQRVAKDVGVDGIMGGQADVAGLK 626

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + I    +   N     +L A +    D    +  G    L    +E       +  
Sbjct: 627 GRWKEITTDVNTMAN-----NLTAQVRAFGDITNAATDGDFTKL----VEVEASGEMDEL 677

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  V +   + +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +
Sbjct: 678 KKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT 737

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q + +  +++ +  LL +++DILDL+ ++A  M +      L   +    ++
Sbjct: 738 ---DLTQYQREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKT 794

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------- 709
           +A K +E  + +    D  +    V D  RL QI   ++ NA+ F+  G   +       
Sbjct: 795 LAVKANEKFLDLTYRVDHSVPDHVVGDSFRLRQIILNLVGNAIKFTEHGEVSLTIQKASS 854

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           ++ + +     F V + G  IP D    +F+ F        R   G GLGLSI +  +NL
Sbjct: 855 VQCSTEEYAIEFVVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNL 914

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG V + S     +     
Sbjct: 915 MGGDVWVKSEYGKGSKFFFT 934


>gi|317496915|ref|ZP_07955245.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895927|gb|EFV18079.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 462

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 122/250 (48%), Gaps = 8/250 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D+ +    L    +    A   K  F+ ++S+++R+P+  I+G   L++    G    + 
Sbjct: 176 DTQKLNDKLEIALKKAEDASLAKTRFLNNMSHDIRTPMNVILGHAQLMENELKGKGMPEM 235

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++E +  S  +LL ++N++LD+A +++G M+L+ +   +  +   +      K  + N
Sbjct: 236 LEHLEKLQQSGNLLLAIINNVLDMAKIESGRMELDENYCRIEAVWKSLFAVFDEKARKKN 295

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFI-- 720
           I +    + +    + D  ++ +I   ILSN++ ++  G +V++        ++G  I  
Sbjct: 296 IALHYTMNVEHEHVLTDVTKVKEILVNILSNSIKYTPVGGSVMVDVDELSCDESGYMIER 355

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  + +D  K +F  F    +  + +  G GLG+SIV+ +++L GG +++ S  
Sbjct: 356 IRVSDTGIGMSQDYLKKIFEAFTREKNTTKSKIAGTGLGMSIVKKYVDLLGGTINVESEL 415

Query: 779 EGVTTINCRI 788
              +T    +
Sbjct: 416 GKGSTFTVTL 425


>gi|168231939|ref|ZP_02656997.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472641|ref|ZP_03078625.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194459005|gb|EDX47844.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205333733|gb|EDZ20497.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 778

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTVEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|91223693|ref|ZP_01258957.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
 gi|91191185|gb|EAS77450.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
          Length = 573

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E    A+  K+ F+  +S+E+R+PL +++G  D+LK S   +L+ +Q   +  +
Sbjct: 200 QLAKAREEAELANRSKSEFLAMMSHEIRTPLNSVLGMLDILKQS---TLSEEQIDALSQM 256

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL +++DILDL+ +++G  +LN   I L D +  V         + N++ K+  
Sbjct: 257 ECSAELLLAIISDILDLSKIESGRFQLNEQWINLRDTVTFVISQQKQIAKKKNLKFKLNC 316

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                  F  D  RL QI   ++ NA+ F+ +G  V +  +  + + + S+ + G  I +
Sbjct: 317 TVTNDKQFWIDSTRLSQILFNLIGNAIKFTDEGE-VKVSVSEQDAELVISISDTGIGISK 375

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F  F        RR  G GLGL+I +  + +  G +++ S +   +T    IP
Sbjct: 376 AKQEHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGKIAVKSDEHVGSTFTISIP 434


>gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|17433762|sp|Q56128|RCSC_SALTI RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 948

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 190/487 (39%), Gaps = 45/487 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N        S + L       +   P   +   +        E +  K+
Sbjct: 239 SLPMGVTIIDENG------HSLISLTG-PDGIIKAEPRWMQERSWFGYTPGFRELVLKKS 291

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              +  S+  S               L+ I+ +   G  ++    +  +           
Sbjct: 292 LPPSSLSIVYSV-PVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ 350

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 351 RLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQII 406

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I  L +  T        
Sbjct: 407 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST-------- 448

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 449 -RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 504

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 505 DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 565 LGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRD 623

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 624 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 683

Query: 784 INCRIPS 790
              RIP 
Sbjct: 684 FTLRIPL 690


>gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1438

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 140/708 (19%), Positives = 256/708 (36%), Gaps = 68/708 (9%)

Query: 125  IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCA--------FLRILSLDGIYS 176
              L++    +     +F     T+    +  EGR  G  A        +  +       +
Sbjct: 423  AALAEVINTMVDTLSAFADEV-TRVAREVGTEGR-LGGQARVPNVAGTWKDLTDNVNSMA 480

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
                  ++   L         L   +D      D  G+IL    +     +       + 
Sbjct: 481  NNLTGQVRNIALVTTAVANGDLSKKIDV-----DARGEILELKTTINTMVDQLSSFAAEV 535

Query: 237  IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
               +R++  E           +   +      +        + VR +     A    D++
Sbjct: 536  TRVAREVGSEGRLGGQAEVEGVSGTWKRLTENVNELAGNLTRQVRAIAEVASAVAEGDLT 595

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            + ITV+       E+  N+   +      R     N+        +  +L +N +    L
Sbjct: 596  RSITVDAS-GEVAELKDNINSMV---GSLRETTRANQ--------EQDWLKSNLARVSGL 643

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-SNPRGG---- 411
                   +L   L  +     + + Y +    ++T   P G  L ++ +   P GG    
Sbjct: 644  MQGHRDLELVGALVMEELTPLVAAQYGAFYLAEET---PEGTELRIVGSYGRPAGGNGHD 700

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV------------AVFGPD--GRIK 457
               M E+L  Q     +      V G+ I  +S G+             V      G I+
Sbjct: 701  RFKMGESLVGQAARSRRTIAADGVPGDYI-SISSGLGPMTPGSLIVLPVVVDDQVLGVIE 759

Query: 458  LSN-PAFRSLWKTEENRLSPGTHIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            L++  AF  + +    +L     +  N     +R              + S  +E +  Q
Sbjct: 760  LASFTAFTPIHRDFLEQLMEMVGVNVNTIVANARTDELLGESQRLTGELQSRSEELQVQQ 819

Query: 516  GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
              L+  +  + E +   L  AQ         +  +A + L E+ + L  A   K+ F+ +
Sbjct: 820  DELQRSNAELEEKAA--LLAAQNSDIEAKNLEIEQARQELEERAQQLSLASTYKSEFLAN 877

Query: 576  VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            +S+ELR+PL +++    LL  +   +L  KQ +Y   I ++ + LL L+NDILDL+ V+A
Sbjct: 878  MSHELRTPLNSLLILAQLLAQNPTRNLTVKQVEYAGIIHSAGSDLLQLINDILDLSKVEA 937

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKI 694
            G M LN     L  LL+ V+ +      + ++   +  + G     + D  RL Q+   +
Sbjct: 938  GKMDLNPERFTLRQLLDYVEATFRPMTTQKSLTFTISTAPGVPVDLLTDDSRLRQVLRNL 997

Query: 695  LSNAMDFSSKGSTVIL-----------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            +SNA+ F+ +GS  +               R  G   F VK+ G  I E   +++F  F 
Sbjct: 998  ISNAVKFTERGSVELRIEPAADHELPDSVHRGGGVVAFRVKDTGIGIAEQQLETIFGAFQ 1057

Query: 744  SNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                    +  G GLGLSI     +L GG ++  S+    +T    +P
Sbjct: 1058 QADGTTSRKYGGTGLGLSISREIAHLLGGALTARSTPGRGSTFTLYLP 1105


>gi|303327059|ref|ZP_07357501.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302863047|gb|EFL85979.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 981

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 130/243 (53%), Gaps = 11/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL + +E+  +A++ K+ F+  +S+++R+P+  IIG T++ + +      +K    +  
Sbjct: 455 QALKDASESANQANKSKSEFLSSMSHDIRTPMNGIIGMTEIARVNIQD--TAKVQDCLHK 512

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS +LL+L+N++LD++ +++G + LN     + +L+  +  ++   + E N  + V 
Sbjct: 513 ITMSSNLLLDLINEVLDMSKIESGRLALNEREFNIAELVETLFTAVQPLLKEKNHTLNVH 572

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
            +  +   F+ D  RL QIF  ++SNA+ ++ +G  +    +  + +      F F +++
Sbjct: 573 INDVVHEDFIGDPLRLQQIFINLMSNAIKYTPEGGNIDFSISEFHDNSPAYSKFQFILRD 632

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  +  +  + +F  F       Q+   G GLG++I  + +++ GG ++++S     TT
Sbjct: 633 NGMGMTPEFLERLFLPFERADEARQKNIAGTGLGMAITRNIVHMLGGDITVASEPGKGTT 692

Query: 784 INC 786
              
Sbjct: 693 FTV 695


>gi|258543393|ref|YP_003188826.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634471|dbj|BAI00447.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637529|dbj|BAI03498.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640581|dbj|BAI06543.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643638|dbj|BAI09593.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646693|dbj|BAI12641.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649746|dbj|BAI15687.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652734|dbj|BAI18668.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655790|dbj|BAI21717.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1105

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 120/258 (46%), Gaps = 5/258 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R ++AL    E    A   K  ++  +S+E+RSPL  I+G+  LL+ 
Sbjct: 627 QTRLLMNEIRARRRMDQALQSAREKAEAASLAKTRYISGISHEIRSPLNAIMGYIQLLQH 686

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                + +++ Q +  +  S   + ++++ +LD++ ++AG ++L+  TI L   L  V Q
Sbjct: 687 D--TRMPTERQQTLSIMRESGDHITSILSGLLDISRIEAGRIELHSDTIPLVTFLESVAQ 744

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  +     ++              D  RL Q+   +LSNA+ ++ +GS V   A    
Sbjct: 745 MMRPQAQAKGLKFYWKPQFLPSVVTCDEHRLRQVLLNLLSNAIKYTQQGS-VTFSARWHA 803

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F+V++ G  I  +  + +F+ F   A      G GLGL+I +    + GG ++ +S
Sbjct: 804 QIAEFTVEDTGPGISIEDQERIFDPFERAAATANIPGTGLGLTITKLLTEVMGGELTFTS 863

Query: 777 SDEGVTTINCR--IPSKE 792
           +    +    R  +P K+
Sbjct: 864 TMGKGSCFKLRLMLPDKD 881


>gi|237721045|ref|ZP_04551526.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449880|gb|EEO55671.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 628

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 110/541 (20%), Positives = 213/541 (39%), Gaps = 44/541 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E GN   Y I  V +    A      S    +         I   L + I ++D +  
Sbjct: 106 TDEDGNEIVYGISEVQDGPDMA------SAYQALQYSERLLSNIFKYLPIGIELYDMDGV 159

Query: 328 LQFHNRSFVELWEID--LAFLATNPSNDELL-EFLRSANKLPEQLNWKTWKE--NIFSVY 382
           L   N   +E++ I+     L  N  ++ +  + ++   K  E  ++    +   + S Y
Sbjct: 160 LVDLNDKELEMFHIEKKEDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYY 219

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           ++++       +    TL+   + +     + +  + T       K     +      D+
Sbjct: 220 QNTQKQGTIDLVTKVTTLY--DSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDY 277

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G A F       LS   +           +  T + +I  T   ++ +       A 
Sbjct: 278 AKVGYAHFN-----ILSGHGYAQKSWYRNVGEADETPLSDIFGTYRHFHPDDR-----AL 327

Query: 503 IITSFDDERKSLQGTLE-----LLSDSVLEYSIIPL---------PNAQTMLTFVNVTDS 548
           +I   DD RK L   L      L  D    ++ + L            + +    ++T+ 
Sbjct: 328 LIRFLDDARKGLTTQLSKEMRVLREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITEL 387

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++  +     + 
Sbjct: 388 KRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENAAEKELYNS 447

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            + + +     L+N   D++DL+ +++G ++L    + L +LL+E     A ++    + 
Sbjct: 448 LIGHNNKLLLNLIN---DVIDLSKIESGYLELRLDWVNLTELLDESVAEYAHQVPS-GVE 503

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +             DR R+ QI S  LSNA+  ++ G  V +    D+      VK+ G 
Sbjct: 504 LLTNYPAHDSLVELDRLRIKQILSNFLSNALKNTTTGH-VEVFYEVDHQSVRIGVKDTGR 562

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP++M + +F RF       Q  G GLGL I +  +    G + + S     TT    +
Sbjct: 563 GIPQNMLEKIFERFEKLDSFAQ--GAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIEL 620

Query: 789 P 789
           P
Sbjct: 621 P 621


>gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 513

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 7/255 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +
Sbjct: 5   ICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE 64

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L     + V  ++ SS++LL +++DILD + +++  +K+        +++N +  + 
Sbjct: 65  ---LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANY 121

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              +    + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D  
Sbjct: 122 LPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGD 180

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
                V++ G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ 
Sbjct: 181 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 240

Query: 776 SSDEGVTTINCRIPS 790
           S     +    RIP 
Sbjct: 241 SEPGMGSQFTLRIPL 255


>gi|326625078|gb|EGE31423.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 788

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 150 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 209

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 210 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 264

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 265 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 321

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 322 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 379

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 380 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 438

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  I +D    +F  +         +   G G+GL++        GG ++
Sbjct: 439 DMLHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 498

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 499 VSSLPGKGSTFTLT 512



 Score = 44.2 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 146 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 205

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------ 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 206 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 261

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 262 RVGKRHGLMGFGRDITERKRYQDALER 288


>gi|325188817|emb|CCA23345.1| hybrid signal transduction histidine kinase putative [Albugo
           laibachii Nc14]
          Length = 1524

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 123/687 (17%), Positives = 250/687 (36%), Gaps = 82/687 (11%)

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
            EG +F++   T+    + I        A  R     GI   +       ++++      
Sbjct: 149 DEGANFEVPLITKTGRHVNIL-----LNATARFDQHGGIVGVVGIGQDITERIAQEQEYT 203

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR------KLFKEEIK 249
           + L D+ +  ++  D  G +   N   KK  E         +GE+         +K+ ++
Sbjct: 204 R-LIDTANAPIFGVDNNGCVNIWN---KKAAEITQYTPSDVMGENLVEKFITDDYKDAVR 259

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-------GEAGIAIDVSKEITVN 302
             +  +    +        +     +   ++   + F       G  GI  D++  I   
Sbjct: 260 SVLAKALDGIETANFEFPLITKMGRRVEILLNATSRFNEHGKVMGMVGIGQDITDRIAQE 319

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYL--QFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
            + +   +   N      IF  +  +     N+   ++    +A +        + E L 
Sbjct: 320 QEYSRLIDT-ANAP----IFGVDANMCVNIWNKKAAQITSYSIAEV--------MGENLV 366

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVTSNPR-------GG 411
                PE        + +    K  +T    + L    G  + +++ + PR        G
Sbjct: 367 ETFISPEYR--PIVADVLSKALKGIQTANFEFPLITRPGTRIEILLNATPRMDSNGTIVG 424

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + + +++T ++  E +Y  L       ID  +  +      G I   N     +    +
Sbjct: 425 VVGIGQDITDRIAQEHEYFRL-------IDTANAPIFGVDTIGNINEWNQKIEEITGYSK 477

Query: 472 NRLSPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
             +   + +   I     +   +     L    +   +    + QG   LL         
Sbjct: 478 ATVLGLSLVNTFIIPESRQQVRQLLNQALIGVDVGEMELPMTTKQGLFLLL--------- 528

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             L NA    +  ++  ++R    + +   A ++ +  K +F+   S+ELR+PL +++G 
Sbjct: 529 --LVNA---SSKKDMHGNIRGAIGVGQDYTARKQMEAAKVNFLASFSHELRTPLNSVLGM 583

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +LLK  K    NS++  ++ Y+S S  + L       DL+ ++AG M++  +   ++DL
Sbjct: 584 LELLKEKKNLDKNSERHVHMAYVSGSLLLNLINDIL--DLSKIEAGHMEITAAPFHMHDL 641

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS-TV 708
           L+   +    K  E NI ++      +    + D  RL QI   +LSNA+ F+S+GS TV
Sbjct: 642 LDYSIEIFKFKARERNIILEQKCGKDVPKMVIGDVVRLRQILLNLLSNAIKFTSEGSITV 701

Query: 709 ILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
                 +          +F V + G  +  +    +F+ F       Q    G GLGL+I
Sbjct: 702 TCNVVLEPSLPPQFKKLLFQVIDTGVGMDAEERSRLFSLFTKLERTRQNNPTGSGLGLAI 761

Query: 761 VESFINLHGGHVSISSSDEGVTTINCR 787
            +  + L  G + + S     +     
Sbjct: 762 CKQLVQLMDGEIDVDSELNQGSNFYFT 788



 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 25/127 (19%)

Query: 397 GQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           G+ + +++ + PR        G + + +++T ++  E +Y+ L       ID  S  +  
Sbjct: 43  GRRVEILLNATPRFNEHGQVMGMVGIGQDITDRIAQEQEYSRL-------IDKASAPIFG 95

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              +G + + N     + +     +     +                 D  AA+   F D
Sbjct: 96  VDVNGCVNIWNRKAVEITQYSTEEVLGEKLVDTFIPD-----------DYRAAVAEVFSD 144

Query: 510 ERKSLQG 516
             K  +G
Sbjct: 145 ALKGDEG 151


>gi|253578668|ref|ZP_04855939.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849611|gb|EES77570.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 640

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 132/256 (51%), Gaps = 15/256 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSK 605
           +  + ++ L    E    A++ K++F+  +S+++R+P+  IIGFT++ L  + +  ++  
Sbjct: 241 EEQKQKQLLMTAAEEADAANKAKSAFLLSISHDIRTPMNAIIGFTNIALHQNTVSDIHDS 300

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +E +  SS  LL+L+ND+LD   +++G + ++   + +  L + V+  +   ++  
Sbjct: 301 ----LEKVQKSSNHLLSLLNDVLDFTRIESGKVTISPEPMDITQLTDNVQAIMNGLLYNR 356

Query: 666 NIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFI 720
           +++ +V  +  K    +AD  R+ ++   +L NA+ F+  G  + L  +     D    I
Sbjct: 357 DLKFEVHREISKNPYVLADVVRIREVLVNLLGNAVKFTKDGGKITLDISSYPGADEKHII 416

Query: 721 FS--VKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSIS 775
               V++NG  + E+  K +F+ F        R Q +G GLG++I + ++++ GG +++ 
Sbjct: 417 TRYVVRDNGIGMSEEFQKKLFDPFSQEDDANARTQYKGTGLGMAITKKYVDMMGGSIAVE 476

Query: 776 SSDEGVTTINCRIPSK 791
           S     +T    IP +
Sbjct: 477 SKKGVGSTFTVEIPLE 492


>gi|91775636|ref|YP_545392.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacillus flagellatus KT]
 gi|91709623|gb|ABE49551.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacillus flagellatus KT]
          Length = 632

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 92/508 (18%), Positives = 188/508 (37%), Gaps = 54/508 (10%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S   + +  LTH   +  N   ++ I +   Y+++ N ++V        +L        L
Sbjct: 159 SMRESESRTLTHIVSMTDN---SVVIANALGYVEWVNDAYVR----RSGYLPEEVVGRYL 211

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP--RGG-- 411
            + +    +  EQ+  +   +  +         +      +G    V +   P   G   
Sbjct: 212 GDLMDGDEETVEQIRRQLDAKQSYQA-------ELLRTAKDGSNYWVDLDIEPLFDGNGQ 264

Query: 412 ---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               I +  ++T +   +   + L  +   T +   +G+  F   G +   NPAF ++  
Sbjct: 265 VFNYIAVARDITEKKMAQETSSRLHGIMQSTFELSPDGLVTFNKKGMLSTFNPAFLNMTG 324

Query: 469 TEENRLS---PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            +  +L        IR + + C             A ++     +   ++ ++    D  
Sbjct: 325 LKPEQLREISQSEFIRLLKSLCQDDQGAVSQRLPDAVVMRMTKPKLTVIKHSVREAHD-- 382

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                   P  + + T     D  +             +   +K  F+   ++ELR+P++
Sbjct: 383 --------PENRFVGTIHYFRDITQ-----------ESELHRMKGEFLSMAAHELRTPMS 423

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLNYST 644
           +I GFT+LL   +      +Q   +  +   S  L  L+ND+LDLA ++A   M  +   
Sbjct: 424 SIHGFTELLLKREFTP--EQQKDMLATVHRQSVRLTKLINDMLDLAKIEARKGMSFDIKP 481

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L D+++   +          I+     +       AD  +L+Q    +LSNA  +S  
Sbjct: 482 YRLTDIVDTALKEFLVSGEGRAIKFHF--NNHALKVSADFDKLIQALVNVLSNAHKYSDP 539

Query: 705 GSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            + + L         +     +V++ G  + ++    +F RF      G   G GLGL +
Sbjct: 540 STEIHLYIKEKQQYQHTYVGIAVEDYGIGMSKEHMDHLFERFYRADVSGSIPGTGLGLCL 599

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
           V+  + +HGG V +SS     + +   +
Sbjct: 600 VKEIMEIHGGWVDVSSVYGEGSVVTLWL 627



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 111/312 (35%), Gaps = 51/312 (16%)

Query: 144 VAETQNDCAIKIEGRVSGS-CAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
            A+  N  +I    RV+GS   +  ++++  + +E          LS   S  + L   +
Sbjct: 113 TADVSNLRSIPKFSRVAGSQRLYSSVVNVRKLNAEKKRLFQAHALLSMRESESRTLTHIV 172

Query: 203 DF---LVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-------SRKLFKEEIKKRM 252
                 V   +  G + W N +Y + +   G + ++ +G          +   E+I++++
Sbjct: 173 SMTDNSVVIANALGYVEWVNDAYVRRS---GYLPEEVVGRYLGDLMDGDEETVEQIRRQL 229

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG------EAGIAIDVSKEITVNDQLT 306
               A +    E + T + G+N    +       G         +A D++++    +  +
Sbjct: 230 ---DAKQSYQAELLRTAKDGSNYWVDLDIEPLFDGNGQVFNYIAVARDITEKKMAQETSS 286

Query: 307 H----TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS- 361
                           +  F++   L   N +F+ +  +    L    S  E +  L+S 
Sbjct: 287 RLHGIMQSTFELSPDGLVTFNKKGMLSTFNPAFLNMTGLKPEQLR-EISQSEFIRLLKSL 345

Query: 362 --------ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
                   + +LP+ +  +  K  +  +  S     D    P  + +          GTI
Sbjct: 346 CQDDQGAVSQRLPDAVVMRMTKPKLTVIKHSVREAHD----PENRFV----------GTI 391

Query: 414 WMFENLTVQVDL 425
             F ++T + +L
Sbjct: 392 HYFRDITQESEL 403


>gi|257790999|ref|YP_003181605.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257474896|gb|ACV55216.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 762

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 118/257 (45%), Gaps = 20/257 (7%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  RAERA    +E  R+A   K+ F+  +S+E+R+P+  I+G T +   +       K 
Sbjct: 347 EKNRAERA----SEEARRASLAKSEFLSRMSHEIRTPMNGIMGMTAIALENAHD--EEKA 400

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +E I  +S  L+ L+NDILD++ +++G + +   T      +  +     T+  E  
Sbjct: 401 RACLEKIDVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQG 460

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----------- 714
           IR K    G L S  V D  RL QI   ++ NA  F+ +  +V L+              
Sbjct: 461 IRYKTEEVGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAH 520

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHV 772
            D     FSV + G  I  +  + +F+ F        +R G GLGL+I + F  + GG +
Sbjct: 521 DDAIWLRFSVTDTGCGIKPENRERIFSSFEQGDESSCRRGGTGLGLAITKRFAEMMGGRI 580

Query: 773 SISSSDEGVTTINCRIP 789
           S+SS     +T    +P
Sbjct: 581 SLSSEVGKGSTFTVDVP 597


>gi|187922203|ref|YP_001893845.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187713397|gb|ACD14621.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 144/363 (39%), Gaps = 15/363 (4%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                  +D++ EGV V   DG I   +  +  L++              +    S    
Sbjct: 149 EARFRFFLDNVEEGVVVC-ADGIIVDVSDRWLELFRCRREEAIGHP----VLDYTSPRVV 203

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                 +      +++ E     GT    ++      +    L     + T +++T    
Sbjct: 204 PMARQLIEERWAETYESEMLRRDGTTFPAIVRGRDQRFGGRELR----LTTILDITRQKE 259

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E+AL        +A   K+ F+  +S+ELR+PL  I+GF  +L+      L++ Q   +
Sbjct: 260 SEQALKLAKAEAERACHAKSEFLSSMSHELRTPLNAILGFAQILEMD--DGLSTDQLDSI 317

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  +   LL L+N++LDLA++++G   L+  T+ ++ L+ +  Q +        I + 
Sbjct: 318 AEILKAGHHLLGLINEVLDLASIESGKTTLSLETVDVSTLIRDCAQLVQPLATSREIDLH 377

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +    +  +  AD QRL QI   +LSN + ++     V +    D      +V + G+ I
Sbjct: 378 LEIPERAAAC-ADNQRLKQIVLNLLSNGIKYNHPSGEVRVIVEPDGSRLRIAVADTGAGI 436

Query: 731 PEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +    +F  F    A      G G+GL I        GG + + S     +     +P
Sbjct: 437 CAERLGELFQPFSRLGADHASVEGTGIGLVITRKLTEAMGGRIGVESEPGKGSRFWVELP 496

Query: 790 SKE 792
             +
Sbjct: 497 LAQ 499


>gi|319900586|ref|YP_004160314.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415617|gb|ADV42728.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 657

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 8/250 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +     ++E  L    E   + + +K++F+ ++S+E+R+PL +I+GF  +L+    G  N
Sbjct: 405 DKKRLQQSEHELRLAKEKAEEGNRLKSAFISNMSHEIRTPLNSIVGFATILEEETRG--N 462

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               +YV  IS +S +LL L+NDILDL+ +++G    N+  + L      +     T + 
Sbjct: 463 ENLKEYVNIISYNSDLLLKLINDILDLSRLESGRQNFNFQILDLVPHCANIVAGFQTNIA 522

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIF 721
              I++             D  RL Q+   ++ NA+ F+ KGS +IL+   +N   ++IF
Sbjct: 523 -KGIKLGFKHSTPTIIAETDTTRLQQVLINLIGNAVKFTQKGS-IILEVKPNNVSQEWIF 580

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  IP +  K VF RF       Q  G GLGLSI +  I   GG + I       
Sbjct: 581 SVTDTGCGIPPEKQKVVFERFNKLDEYAQ--GTGLGLSICQITIENLGGRIWIDPEYTKG 638

Query: 782 TTINCRIPSK 791
                 +P K
Sbjct: 639 ARFMFTLPYK 648


>gi|302382311|ref|YP_003818134.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192939|gb|ADL00511.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 580

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 145/346 (41%), Gaps = 13/346 (3%)

Query: 448 AVFGPDGRIKLSN---PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            V    GR+  +    P    +    E  L     I  + A   R   ++    L     
Sbjct: 214 LVLDASGRVYGAYGSAPPALLVDALFEQGL-----IAAVHAPDRRPILDAFDAALKGQPA 268

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
                 R++L   + L+     + +  P   AQ      + T     E  L         
Sbjct: 269 QISFAPRQALDRRVTLIVRRADDAAGHPRLIAQA----FDGTRQFATEIGLEAARAEAEA 324

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +  K  F+ ++S+ELR+PL  ++GF+D+++    G L+ K ++Y + I  + + LL+L+
Sbjct: 325 QNAGKTRFLANMSHELRTPLNAVLGFSDVMRQRLFGPLSPKYAEYADNIHEAGSHLLDLI 384

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            D+LD++ ++A   +L+       ++++     +     +  + +  +      +  ADR
Sbjct: 385 GDVLDVSKIEAERYELSREPFDAREVVSAAVALVRGTATDGGVTLASLLPDDPLAVEADR 444

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           + L QI   +LSNA+ F+  G +V L            V + G  I     K +   F  
Sbjct: 445 RALKQITLNLLSNAIKFTPSGGSVTLTLETIGPYLEMVVADTGVGIAARDLKRLGRPFEQ 504

Query: 745 NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                QR +G GLGLS+V +   LHGG +SI S+    T +  R+P
Sbjct: 505 AGEADQRAKGTGLGLSLVRALAELHGGRMSIESTLGEGTAVTVRLP 550


>gi|262384808|ref|ZP_06077940.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262293524|gb|EEY81460.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 494

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 97/414 (23%), Positives = 181/414 (43%), Gaps = 33/414 (7%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL------------VKVQGETIDHLSEGV 447
             + +        I    N++  V+ E     L            + +Q   I   S   
Sbjct: 85  FKLRLVPVHDRYVIIYIRNVSELVEQEKANEALSSKLSESRMMMELALQNSKITTYSFNF 144

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           + F    ++   N  F   + T  + L     I           +  D + LF  I T+ 
Sbjct: 145 SRFKSCDKV-HCNRCF-QFYGTTNSLLKRNQFICQALPQLRHPDDSGDFFYLFNTIRTNK 202

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQ--------TMLTFVNVTDSVRAERALTEKN 559
            DE K +   L+   ++   Y +I   + +         +   ++  + +  E  L    
Sbjct: 203 LDEYK-IDFRLKNDDNTYRIYEVIGKTHEKDENGFPNLIVGCMIDDQERLEFEEDLIRAK 261

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L   +  Y+  I  ++ +
Sbjct: 262 EKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDLEL---RQNYISLIKMNNDL 318

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E  + I + +   +  
Sbjct: 319 LLSIVNDVLDISRIESDMMTFTYMDVYLPSFMQDIYNSIQLRKPE-GVEITLDACSDII- 376

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKS 737
           F  DR RL QI   +L+NA+  + KGS +        +     F V + G  IP+D   +
Sbjct: 377 FNIDRNRLWQICMNLLTNAVKHTKKGS-IWFGYTLEAEGKMVKFYVSDTGCGIPKDELDN 435

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P K
Sbjct: 436 IFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLPMK 487


>gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 948

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 190/487 (39%), Gaps = 45/487 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N        S + L       +   P   +   +        E +  K+
Sbjct: 239 SLPMGVTIIDENG------HSLISLTG-PDGIIKAEPRWMQERSWFGYTPGFRELVLKKS 291

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              +  S+  S               L+ I+ +   G  ++    +  +           
Sbjct: 292 LPPSSLSIVYSV-PVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ 350

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 351 RLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQII 406

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I  L +  T        
Sbjct: 407 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST-------- 448

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 449 -RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 504

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 505 DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 565 LGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRD 623

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 624 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 683

Query: 784 INCRIPS 790
              RIP 
Sbjct: 684 FTLRIPL 690


>gi|197335195|ref|YP_002157173.1| sensor histidine kinase [Vibrio fischeri MJ11]
 gi|197316685|gb|ACH66132.1| sensor histidine kinase [Vibrio fischeri MJ11]
          Length = 1146

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 85/414 (20%), Positives = 169/414 (40%), Gaps = 32/414 (7%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  +G  + + E  T+  +    Y+    +    I+H+S+G+AV     ++   N
Sbjct: 596  RLVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHISQGIAVVDKQMKLVAWN 655

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              +  L+      +  G  I ++    +       G             ER++   +  +
Sbjct: 656  QRYLELFTFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEMHVKRRVEHLERRTRHVSSRV 715

Query: 521  LSDS-VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
             +D  V+E    P+PN   +++F ++T   +AE+AL E NE L                 
Sbjct: 716  RADGQVIEVQGNPMPNGGFVMSFTDITVFRQAEKALKETNETLESRVHERTKELEKLNQR 775

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K   +  VS++L  PL     F   L          K S ++E   
Sbjct: 776  LVGATQSAELASQSKTRLLAAVSHDLMQPLNAARLFASSLNEVAKDQETQKISGHIESAL 835

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++     L+ D+LD++ ++AG ++ +     L  L + ++        + NI   VI  
Sbjct: 836  GAAE---ELIGDLLDISRLEAGKLETHIQGFSLGVLFSNLEAEFGALAKQQNIDFSVIHS 892

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              +    +D + L ++    L+NA  ++ +G  V+L A R        V +NG  IPE+ 
Sbjct: 893  DVV--VESDSKLLRRVVQNFLTNAFRYNPQG-KVVLGARRVGDQIRIDVWDNGIGIPEEK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +++F+ F         +G+GLGL+I     ++ G  +S+ S  +  +  +  +
Sbjct: 950  QQAIFDEFTRVDQSRADQGLGLGLAIARGISHVLGHTISLRSWLDKGSVFSVTL 1003



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 69/213 (32%), Gaps = 10/213 (4%)

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
           ++   ++ + F  +  + +                +  G        R++ +    G  +
Sbjct: 550 RRRAQKAFRQFSNQQGETLQPQQQASSALIRHTERVLAG-VFGASSSRLVLTSALQGRNM 608

Query: 294 DVSKEITVNDQLTHTYEI--------LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            + +  T+ D+ +  Y+         + +++  IA+ D+   L   N+ ++EL+      
Sbjct: 609 QLEEVATIVDEASELYDFSRGLLQGAIEHISQGIAVVDKQMKLVAWNQRYLELFTFPPGL 668

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +       +++             + +   +      +    H  +    +GQ + V   
Sbjct: 669 IQVGRPIADVIRHNAEQGLCG-PGDPEMHVKRRVEHLERRTRHVSSRVRADGQVIEVQGN 727

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
             P GG +  F ++TV    E       +    
Sbjct: 728 PMPNGGFVMSFTDITVFRQAEKALKETNETLES 760


>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
 gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
          Length = 833

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 140/366 (38%), Gaps = 40/366 (10%)

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE--RKSL 514
            +S P    L      R +    +R +      +   +D ++     I   D E  R+ +
Sbjct: 195 VVSEPVASLLHTVNAVRRNKDYQLRAVRMANDEFGELADAFNAMLEEIDHRDHELFRQQM 254

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           Q   E++         +   N     T   +  + RA R   E       + E K  F+ 
Sbjct: 255 QLEGEVMD----RTQALKKTNRHLEETVRALQQANRAIRVSEENKRVAEASAEDKAQFLA 310

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+ELR+P+  ++G   LL  ++   L+S Q  YVE    S  ILL L+N++LDL+ ++
Sbjct: 311 NMSHELRTPMHGVLGMLSLLLETQ---LSSDQQHYVEVAHESGNILLELLNNVLDLSKIE 367

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693
              + L      L   + EV   +    +   + + V  +  + S  V D  RL QI   
Sbjct: 368 HNKLALERVEFDLRQAIEEVVVILGESANSKLLELVVWQNASVPSRVVGDPIRLKQIVFN 427

Query: 694 ILSNAMDFSSKGSTVILKAARDNG----------------------------DFIFSVKN 725
           +L NA+ F+++G   I  A                                    F V +
Sbjct: 428 LLGNAIKFTTQGHVEISYAVISENTRRGVVDSAEADFQAQEQDVSESVGDELWIRFDVSD 487

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + ED+ + +F  F        R   G GLGL++ +  + L GG + + S     + 
Sbjct: 488 TGVGLSEDVQEKIFEAFTQADSTTTRVYGGSGLGLALCKQIVKLMGGAIGVESELGKGSK 547

Query: 784 INCRIP 789
               IP
Sbjct: 548 FWFEIP 553


>gi|239623825|ref|ZP_04666856.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521856|gb|EEQ61722.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1081

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 91/403 (22%), Positives = 166/403 (41%), Gaps = 33/403 (8%)

Query: 407 NPRGGTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL-SNPA 462
           NP  G I  F    ++T ++  E     + ++  + +  +            + +  N  
Sbjct: 395 NPESGDIICFFYTFDVTEKMVQEQLLYRIAELDYDIVTEID---IQEDTHRPVSIRCNQK 451

Query: 463 FRSLWKTEENRLSPGTHIRNIAATC-SRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                +           IR IAA C  +  +E     L    I    ++  S    +E+ 
Sbjct: 452 -----EQVPKPGRFQESIRGIAAQCMEKAASEEYLQKLDYQYIKDHLEKEDSYSFIVEMR 506

Query: 522 SD----SVLEYSIIPLPNA--QTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNS 571
                  V  + +  +  A  +  ++  +VTD VR E+     L     A  +A+  K+ 
Sbjct: 507 DRAGVMRVKRFQVFYINKALGRVGMSRTDVTDVVRKEQRQKEDLAAALVAAEQANAAKSD 566

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  IIG + +   S     + +    +  I  SS  LL+L+NDILD++
Sbjct: 567 FLSRMSHEIRTPMNAIIGMSTIAAQSIGD--DEQVEDCISKIGISSRFLLSLINDILDMS 624

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQI 690
            +++G M L    I   D LN +      +     +  + I D  L   ++ D  +L Q+
Sbjct: 625 RIESGKMLLKNEKIPTEDFLNGINSICYAQAAARGVDYECIVDPVLDDYYMGDAMKLQQV 684

Query: 691 FSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
              ILSNA+ F+ +G  V L AA     +++    F V + G  + E+    +F  F   
Sbjct: 685 LINILSNAIKFTKEGGKVTLSAALRRKTKNDAVLRFIVNDTGIGMGEEFIPHIFEPFSQE 744

Query: 746 AHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           +        G GLGL+I +S +++  G +++ S     T    
Sbjct: 745 STGTTTPYGGSGLGLAISKSIVDMMDGKINVRSIKGIGTEFTV 787


>gi|229529146|ref|ZP_04418536.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
 gi|229332920|gb|EEN98406.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
          Length = 736

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 173/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 149 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 204

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 205 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 262

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 263 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 322

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 323 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L  KQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 383 LKDE---LTPKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 498

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +    R
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR 578


>gi|153833290|ref|ZP_01985957.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01]
 gi|148870426|gb|EDL69347.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01]
          Length = 985

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 7/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S  
Sbjct: 460 RKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDS---GLNPMQKRYAEIINRSGK 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD + ++AG +++      L+ ++ +  Q +  K  E  +      +  +G
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVG 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
            +   D  R+ Q+ S ++ NA+ F+ +G   + +     D    +F V + G  I +   
Sbjct: 577 RYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKDQ 636

Query: 736 KSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K++F+ F        Q  G GLGL+I    I   GG + + S +   +     IP +E
Sbjct: 637 KTLFDAFTQAEGGMNQTGGTGLGLAISRRIIQAMGGCLDVDSEEGHGSRFWFSIPLEE 694


>gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
 gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
          Length = 953

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 7/255 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   ++V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T  
Sbjct: 444 ICVLIDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQ- 502

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L     + V  ++ SS +LL +++DILD + +++  +K+        +++  +  + 
Sbjct: 503 --GLPQGVDRLVTAMNNSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGNY 560

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              + +  + +    +  +  SF  D  RL Q+ S IL+NA+ F+  G  ++L       
Sbjct: 561 LPLVVKKRLGLYCFIEHNVPLSFNGDPVRLQQVISNILNNAIKFTDTG-CIVLNVRTCGN 619

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  IPE     +F+ F       QR  +G GLGL+I E  INL  G + + 
Sbjct: 620 YLEFQVRDTGVGIPEREITRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIEVE 679

Query: 776 SSDEGVTTINCRIPS 790
           S     ++   RIP 
Sbjct: 680 SEPGLGSSFTVRIPL 694


>gi|332305741|ref|YP_004433592.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173070|gb|AEE22324.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 911

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 16/251 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL        KA++ K+ F+ ++S+E+R+PL  IIGF+ L K S      ++   Y+  
Sbjct: 524 RALALAKHEADKANKAKSQFLANMSHEIRTPLNAIIGFSQLAKRSNDL---AEHQSYIHK 580

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS+SS  LL ++NDILD++ +++  + L      L+D+LN             N+   + 
Sbjct: 581 ISSSSDTLLAIINDILDISKIESEKLVLEEMEFDLHDILNRASTMFEPGASIKNVDWALE 640

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------DFIFSV 723
            +   G F   D  R+ QI   + SNA+ F+ +G  V+     ++             +V
Sbjct: 641 DNLPAGLFFKGDPLRIEQIVINLCSNAIKFTQQGRIVLHATLLEHNKNESPPTARIQITV 700

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  I      ++F  F        RR  G GLGL+I      L  G ++I S +   
Sbjct: 701 KDTGIGITPAQQGNLFRAFSQADTSTTRRFGGTGLGLAISNELTQLMQGSLTIESEEGVG 760

Query: 782 TTI--NCRIPS 790
           +       +P+
Sbjct: 761 SEFTLTITLPT 771


>gi|289662757|ref|ZP_06484338.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1057

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K G+L+++Q +Y 
Sbjct: 348 AQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSTEQVKYA 407

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L   T+    +L  ++++      +  + ++
Sbjct: 408 QAILSSNNDLLTLINDILDLSKIEAGHVELADETVATTSVLQRLRETFEPLARQKGLALE 467

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +        V D QRL QI   +L+NA+ F+  G   +   A   G   F+V + G  
Sbjct: 468 IAAVADTPTQLVVDNQRLQQILKNLLANAIKFTEHGKVSLSVQAHAPGRVRFAVTDTGIG 527

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 528 IAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLE 587

Query: 788 IPS 790
           +P+
Sbjct: 588 LPT 590


>gi|138895943|ref|YP_001126396.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248834|ref|ZP_03147534.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134267456|gb|ABO67651.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211710|gb|EDY06469.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 468

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 9/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R  +A  +  +A+ K DE K  F+ +VS+ELR+PL+ I G+++ L +    +   +Q
Sbjct: 219 EIGRLAQAFNQMADAIAKEDERKREFLANVSHELRTPLSYIKGYSEALLSGLARTKEEEQ 278

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S ++  I   +  +  LV D+LDLA ++   + L  + +    ++ +V       + +  
Sbjct: 279 S-HLRLIHRETERMERLVRDLLDLAQLEGQSVPLERAPVAFAQVIEDVMDMYRPIITQKR 337

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSV 723
           + +    D +L     D  RL Q+   +L NA+ ++ +G  V ++ +R     G+ +   
Sbjct: 338 LTLTCDLDYELI-VDGDADRLEQVVRNLLDNAIRYTPEGGAVTVRLSRFSDTEGELVI-- 394

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP+D    +  RF        R   G GLGL+IV+  + LHGG +   S     
Sbjct: 395 RDTGKGIPKDQLPLLGQRFFRVDRARTRKEGGTGLGLAIVKQIVALHGGAIQFDSDLGQG 454

Query: 782 TTINCRIPSKE 792
           TT++ R+P  +
Sbjct: 455 TTVSVRLPLVQ 465


>gi|237748048|ref|ZP_04578528.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379410|gb|EEO29501.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 796

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 141/316 (44%), Gaps = 14/316 (4%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            +   E    +L   + T+ +    +     + L+   + +S     +   + T  ++T+
Sbjct: 198 EKLIAEMRLDNLLEKLSTANEHVIYTQMYENDRLAYKKIRFSFYDRSHNILLATRTDITE 257

Query: 548 ---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                + ++ L +   A   A+  K+ F+  +S+++R+P+  IIG T +       +   
Sbjct: 258 IINERQQKKLLQDALNAANVANRAKSEFLSRMSHDIRTPMNAIIGMTAI--AGAHLANQE 315

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           + S  ++ I+ SS +LL+L+N++LD+A +++G + L+   + L DL+  +   I   + +
Sbjct: 316 RMSDCLQKITTSSRLLLSLINEVLDMAKIESGRIILSEEEVNLGDLVTSLLSMIQPDLKK 375

Query: 665 NNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------G 717
              R  V   +      + D QR+ Q+    LSNA+ ++     ++ +  +        G
Sbjct: 376 KGHRFDVHLFNIDEEWVICDSQRIQQVLLNFLSNAIKYTPDNGHIVFEITQLPSSENGFG 435

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSIS 775
            + F  ++NG  +     + VF  F           +G GLG++I ++   + GGH+ + 
Sbjct: 436 KYRFIFRDNGIGMTPGFLEKVFEPFERADEVSIQSIQGTGLGMAIAKNIAEIMGGHIGVE 495

Query: 776 SSDEGVTTINCRIPSK 791
           S     TT    IP +
Sbjct: 496 SEHGKGTTFTLTIPMQ 511


>gi|118477428|ref|YP_894579.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118416653|gb|ABK85072.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 465

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 227 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 285

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 286 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 345

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++
Sbjct: 346 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDD 403

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 404 GIGIAKEHLPYIEQSFYQINNHTT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 461

Query: 787 RIPS 790
           ++P 
Sbjct: 462 KLPL 465


>gi|117926355|ref|YP_866972.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117610111|gb|ABK45566.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 550

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 123/258 (47%), Gaps = 8/258 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T   ++   +    E++          ++  K+ F+  +S+E+R+PL  I G     +  
Sbjct: 147 TFECYMESRERTIMEQSRAMVA-LAESSNRTKSMFLAAMSHEIRTPLHAINGLA---ELL 202

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   LN  Q  YV  I  + + LL L+NDILD + ++AG ++L    + +  L++E  + 
Sbjct: 203 EREELNQDQKHYVHIIYRAGSRLLALINDILDFSRLEAGRIELESLVVEVRPLVHETMEM 262

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++ K  +  + ++   + ++    ++D  RL Q+   ++ NA+ F+  G  V L+ +   
Sbjct: 263 LSFKAKDKGLALQWTLEPQVPQWMMSDPTRLGQVLVNLVGNAIKFTQSGE-VALEISVAE 321

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
                 V++ G  I ED  + +F  F  +     RR  G GLGLSI +  + L GG +S+
Sbjct: 322 QQLCVMVRDTGLGIAEDKQQIIFEPFSQSDITISRRFGGTGLGLSITKQIVALMGGTISV 381

Query: 775 SSSDEGVTTINCRIPSKE 792
            S     +    R+P KE
Sbjct: 382 QSRLGEGSRFYVRLPLKE 399


>gi|153809952|ref|ZP_01962620.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174]
 gi|149834130|gb|EDM89210.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174]
          Length = 904

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 173/386 (44%), Gaps = 27/386 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-------FRSLWKTEENRLSP 476
           D E K     +   E + +   G  V  P  +I L N +       F  + K +E  +  
Sbjct: 379 DAEIKQYGTQEECLEAVANGKVGATVI-PSSKINLLNESPLTKSLSFAEMAKRQELAMFT 437

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSIIPL 533
               R  A   ++  ++S   ++   ++    S  +++ +LQ  L   +  V+  S + +
Sbjct: 438 TRENRRAATIINKAIDQSS--NILNGVVLAQNSVSEKKMTLQDVLTEYAGFVIGVSFVII 495

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +L  ++V+   + E    ++ +    A+  K +F+ H+S+++R+P+  I+GFTD+
Sbjct: 496 FVLLLLLYSLSVSRKKQMEAL--KEAQDANAANIAKTTFLNHMSHDIRTPMNAIVGFTDI 553

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
               K    + +    ++ I  SS  L+ L+ND+LD++ +++G ++     + L D+ + 
Sbjct: 554 AMKRK---PDKEVEDCLKKIRQSSEYLMTLINDVLDISRIESGKLEYKPVLVDLRDMTDT 610

Query: 654 VKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V       M   ++   V  +  K    +AD  R+ ++   I+SNA+ F+  G T+   A
Sbjct: 611 VLSIARGYMENRDLNFSVSREELKNPYVMADELRIREVLLNIISNAVKFTKDGGTISFVA 670

Query: 713 A----RDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
                +D    I    + + G  + E+    +F+ F    N  R   +G GLG++I + +
Sbjct: 671 ENCPGKDEHHLIVRYHISDTGIGMSEEFQTRIFDEFSQENNGARTSYKGTGLGMAIAKQY 730

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           ++L GG + +SS     +     IP 
Sbjct: 731 VDLMGGKIEVSSRQGVGSAFTVEIPL 756


>gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31]
 gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31]
          Length = 698

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 119/236 (50%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +A   K+ F+ ++S+E+R+PL  ++G   +++ S LGS      ++++ I  S  
Sbjct: 315 RDRAERASLAKSQFLANMSHEIRTPLNGVLGMAQVMERSGLGS---PHREHLKIIRDSGE 371

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKL 677
            LL ++ND+LDL+ ++AG  +L+     L + +    +  A    + ++   K I+   L
Sbjct: 372 TLLAILNDVLDLSKIEAGRFELDDHVFDLAETIGAACRPFALLARQKDVAFVKDIAPDAL 431

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           G++  D  RL Q+ S + SNA+ F+ +G  + L     +    F++ + G  I  D   S
Sbjct: 432 GAWCGDSVRLRQVLSNLASNAVKFTHEG-QIRLTVGATSEGLTFTLTDTGIGIAPDRIAS 490

Query: 738 VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F +FV       RR  G GLGL+I    +   GG + + S+    +T   R+P +
Sbjct: 491 LFEKFVQADSSTTRRFGGTGLGLAISRELVERMGGTLRMDSAPGKGSTFVFRLPFE 546


>gi|330832446|ref|YP_004401271.1| sensor histidine kinase [Streptococcus suis ST3]
 gi|329306669|gb|AEB81085.1| sensor histidine kinase [Streptococcus suis ST3]
          Length = 449

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 139/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L               + ++S+GV      GRI + N   +        + 
Sbjct: 75  LNDLSEVIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSSQK- 133

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+  +     RY       DL A       D     +  L L ++     S   L 
Sbjct: 134 QEQYHLLEVLDLSDRY----TLRDLLAQTPEIAIDHTNENEEFLTLRANFATIRSESGLI 189

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   ++   ++T+  + ER               +  FV +VS+ELR+PLT++  + + L
Sbjct: 190 SG-LVVVLHDMTEQAKEERE--------------RRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    S    +V+     +  ++ ++ D+L L+ +D  + +++   I     +  +
Sbjct: 235 DEGAL--TESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFI 292

Query: 655 KQSIATKMH---ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   +   +    I             D  ++ Q+   IL+NA+ +S  G T+   
Sbjct: 293 LNRFDQMKNTDSDKVYTIVRDYQISPIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I SV + G  IP+     +F+RF          + G GLGL+I +  +  H 
Sbjct: 353 MKTTDSQLIVSVSDEGLGIPKTDLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGHGSTFTIVLP 432


>gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 948

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQI 405

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 406 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 448

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 449 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 503

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 504 VDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRK 563

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V+
Sbjct: 564 QLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVR 622

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 683 QFTLRIPL 690


>gi|115358543|ref|YP_775681.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115283831|gb|ABI89347.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 664

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 151/371 (40%), Gaps = 23/371 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           V    +D   + +       RI   N A R L+  +            IA    R +   
Sbjct: 145 VLRRVVDASPDAIVGVDVARRITSWNLAARRLFGIDAAAAIGHDVTMLIAPRWLRLHPVP 204

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT-------- 546
             +    A     D       G+    +     ++  P+ +AQ   T +++T        
Sbjct: 205 ASFADAGAPAGPLDILCLRRDGSRFRAT-----FTASPIVDAQGNCTGLSMTLREARERR 259

Query: 547 ----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                 +R  R   +      +++ +K+  +  VS+ELR+PL  I G+ ++L++ +    
Sbjct: 260 RCEQRDLRMLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRSGEGQGF 319

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                Q ++ I  S+  L  +V D+LD +++  G ++L  + + L  ++ E  + I    
Sbjct: 320 ---AHQAIDAIDRSARSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQEAVREIGDTA 376

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N + +            AD +RL Q+ S +LSNA+ F+  G  + +           S
Sbjct: 377 QANGLELSTECAMPSCVIAADAERLRQLLSNLLSNAIKFTPPGGRIKVSLNPAGARVRLS 436

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-E 779
           V + G  I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V+ +S    
Sbjct: 437 VADTGQGISAERLPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAG 496

Query: 780 GVTTINCRIPS 790
             TT+   +P+
Sbjct: 497 RGTTVTVMLPA 507


>gi|297569748|ref|YP_003691092.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925663|gb|ADH86473.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 496

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 81/283 (28%), Positives = 139/283 (49%), Gaps = 6/283 (2%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +S+   L+++     E   I   N Q  L   +         AL      L++ D +K++
Sbjct: 218 RSITRPLQVIKAKTRE---IAHGNFQGDLQIASPPIIKELAIALNSMCHKLQELDNLKSA 274

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F   +S+ELR+PL +I   T +L     G +N+ Q + +  IS  S  L+N VN +LDLA
Sbjct: 275 FFADMSHELRTPLASIKEGTHILLDRVGGEINNHQQRILLIISQESDRLINRVNSLLDLA 334

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG++  +YS   L+ L+ +  Q +        +RI V     L     D++R++Q+ 
Sbjct: 335 RMEAGMVVDHYSRTSLSTLVRDALQGLQPLAEAKGVRI-VNHIAALPPVNVDQERIMQVV 393

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRG 749
             ++ NA+ F+ +G T+ L A   +     +V++ G  IPE   + +F +F     A   
Sbjct: 394 RNLVGNAIKFTPEGGTITLTATVRDKMLEVAVQDTGIGIPEGDLERIFLKFQQVLPARSD 453

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           + +G GLGL++V+  I  HGG V  +S  E  +T    +P  E
Sbjct: 454 KVKGSGLGLAMVKQIILAHGGKVWATSQIEKGSTFYFTLPLAE 496


>gi|254226171|ref|ZP_04919766.1| sensor histidine kinase LuxQ [Vibrio cholerae V51]
 gi|125621273|gb|EAZ49612.1| sensor histidine kinase LuxQ [Vibrio cholerae V51]
          Length = 857

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 157/383 (40%), Gaps = 34/383 (8%)

Query: 423 VDLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
             LE  +  L    K   +  +       ++   GR+   NP+ +               
Sbjct: 343 RTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQ--------------- 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
           I+ +      ++            IT+          T E+    V  +++ P+    Q 
Sbjct: 388 IQFLREDAQNHFLFEILERQLLPTITNAAQGNNPSDVTTEV-DGRVYRWNLSPIMVEGQI 446

Query: 539 MLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +       D      AE+          ++  ++  F+  +S+ELR+PL  ++G + LLK
Sbjct: 447 ISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLK 506

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q ++V  + +S   LL ++NDILD + ++ G  ++  +     +L+  + 
Sbjct: 507 RT---PLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRXKELVCAID 563

Query: 656 QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           +      +E  + + V S+    + V +D+ R+ QI   +L+NA+ F+ +GS + ++   
Sbjct: 564 RIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQL 622

Query: 715 DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             GD     +  V + G  I E     +F  F+       R   G GLGL+IV S + + 
Sbjct: 623 IEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEML 682

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G + +SS     T    ++P +
Sbjct: 683 SGQLHVSSEYGIGTRFEIQLPIE 705


>gi|320155892|ref|YP_004188271.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319931204|gb|ADV86068.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 768

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 11/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + +   K +F+  +S+E+R+P+  ++G   +L  +    LN +Q ++++ + 
Sbjct: 302 LEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKT---PLNEEQRKHLKTLY 358

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G M+ + +    + ++  V     T   E  ++ KV S 
Sbjct: 359 DSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVYST 418

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSS 729
              G  + AD+ RL Q+   +L+NA+ F+++G  V +                VK+ G  
Sbjct: 419 VPTGRWYCADKARLRQVLFNLLNNAVKFTARG-LVEVYFEEHTREKANYLSIKVKDTGIG 477

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE   K +F  F        RR  G GLGL+IV+      GG V++SS     T     
Sbjct: 478 IPESAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSSQVGLGTCFTVE 537

Query: 788 I 788
           +
Sbjct: 538 L 538


>gi|255014923|ref|ZP_05287049.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 761

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 9/273 (3%)

Query: 524 SVLEYSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              E+    L +A          +N+ +    E  L    E   ++D +K++F+ ++S+E
Sbjct: 490 QWWEFRYGSLEDANDGYVINGLCLNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHE 549

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++L+  S+      ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M 
Sbjct: 550 IRTPLNAIVGFSNLM-NSEEVLEPEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMS 608

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             +    LN L+NE+  +    M E  + +++           D  RL Q+ S  ++NA+
Sbjct: 609 FVFDRHDLNVLINEIYCTFQLMMPE-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAI 667

Query: 700 DFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            F++ G   +       GD     V++ G  IPE+  K VF+RF       Q  G GLGL
Sbjct: 668 KFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGL 725

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I +      GG + + S     +     +P +
Sbjct: 726 AICQVIAQRFGGEIQLKSEYGKGSRFMLTLPKE 758


>gi|237746473|ref|ZP_04576953.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377824|gb|EEO27915.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 853

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 111/571 (19%), Positives = 209/571 (36%), Gaps = 57/571 (9%)

Query: 264 ETVSTLEHGNNKSYKIVRV--LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI 321
           E          +      +   N   +  IAI +S+ I  + Q     E L+     I  
Sbjct: 2   EHRQKRHDNQYRWTDTHFIFLDNPVNDDVIAILLSRNIDDDKQAALRQEELNRARQTIL- 60

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSN------------DELLEFLRSANKLPEQL 369
                +    N S  E +      LA  P              D   +F R      +  
Sbjct: 61  -----HEALKNTSMYEFYYYPRKNLAILPRRMYEHYGYRERYPDVPYDFAREMVFGEDHE 115

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRGG---TIWMFENLTVQ 422
           N+      I    K++ T   T+ L +GQT        ++ +  G     + +  ++T  
Sbjct: 116 NYFQAYRKIREGEKTATT---TYRLKDGQTWREVIFTTISEDDDGRPTFVVGLSGDITEH 172

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              E +   L  +   TI    + + ++  +     +  + R   +         + +R 
Sbjct: 173 KKAELENIKLQSIYDFTIQRNYDCILIWNVETGTYEARFSDRFDARGMPPFGRNTSGVRK 232

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---------LSDSVLEYSIIPL 533
            AA    +  E D       ++ +   E+   +  + L         L    L    I  
Sbjct: 233 FAAL---FVCEEDRRPFLDEMLNASLPEKLDREKDIHLYFRSPQNGELRHKELSLCYIGN 289

Query: 534 PNAQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
              + ++T  ++ D ++ E    +ALTE  EA + A+E K+ F+  +S+++R+P+  IIG
Sbjct: 290 KRQRILMTLRDIHDMLKKEEQHRQALTEAFEAAKSANEAKSHFLSRMSHDMRTPMNAIIG 349

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            T + K         K    +E I  SS  LLNL+N++LD   +++G   L      L+ 
Sbjct: 350 LTTIAKNHPGD--TGKIRDCLEKIDTSSQHLLNLINEVLDTCRIESGKFFLEEKPFTLSG 407

Query: 650 LLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           L+ +        +      ++V     +  +   D QR+ +IF  ILSNA+ ++  G  +
Sbjct: 408 LIGDTLAMTRPAIQRQKHTLRVNVRQLEHETIKGDPQRIQEIFLNILSNAIKYTPDGGVI 467

Query: 709 ILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSI 760
               +         G + F  ++NG  + ++  K +F  F           +G GLG++I
Sbjct: 468 TWTISESEAAIRGVGCYRFVFEDNGIGMSDEFRKKIFEPFEREKDSRTNHIQGTGLGMTI 527

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +   L  G + + S     +     +  K
Sbjct: 528 ALTIARLMNGSIDVESEAGKGSRFTVTLYLK 558


>gi|220908338|ref|YP_002483649.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864949|gb|ACL45288.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 800

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 139/315 (44%), Gaps = 11/315 (3%)

Query: 478 THIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             I+ +     +    E     L    +T   DE   L      +S   +      L  A
Sbjct: 244 QPIQQLMRLTRQVIRGEGCSPTLPTVPLTRRTDELGDLSRAFTQMS-HTINVRQQDLNRA 302

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               T         A+RA     +    A+  K++F+ H+S+ELR+PL  ++GF  LL+ 
Sbjct: 303 VNERTAQLAESMQSAQRA----RQEAEMANRAKSAFLAHMSHELRTPLNVMLGFVQLLER 358

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L  L+ +Q + ++ I+ S   LL L+ND+L+L+ ++AG ++L+ +   L   L  +++
Sbjct: 359 DTL--LSDRQRESLQTINRSGEHLLGLINDVLELSRIEAGRVELHPTAFDLYRFLYTLQE 416

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714
               ++    + + +     L    VAD  +L Q+   +L NA+ F+ +G  TV +    
Sbjct: 417 MFQIRVQNKQLSLTLELAKDLPPYVVADEGKLRQVLINLLGNALKFTDRGGITVRVGYEL 476

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVS 773
                 F V + G  +     + +F  FV        + G GLGL+I   F+ L GG + 
Sbjct: 477 IRERLAFVVVDTGRGMATAELEQLFEPFVQGCTGLNPQEGTGLGLTISREFVRLMGGEIQ 536

Query: 774 ISSSDEGVTTINCRI 788
           ISS+    +T+   I
Sbjct: 537 ISSAIGCGSTVRFTI 551


>gi|150008085|ref|YP_001302828.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298376562|ref|ZP_06986517.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
 gi|149936509|gb|ABR43206.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298266440|gb|EFI08098.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
          Length = 761

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 9/273 (3%)

Query: 524 SVLEYSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              E+    L +A          +N+ +    E  L    E   ++D +K++F+ ++S+E
Sbjct: 490 QWWEFRYGSLEDANDGYVINGLCLNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHE 549

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF++L+  S+      ++ Q+V+ I+ +S +LL L+NDILDL+ +++G M 
Sbjct: 550 IRTPLNAIVGFSNLM-NSEEVLEPEEREQFVKLINTNSDLLLKLINDILDLSRMESGKMS 608

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             +    LN L+NE+  +    M E  + +++           D  RL Q+ S  ++NA+
Sbjct: 609 FVFDRHDLNVLINEIYCTFQLMMPE-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAI 667

Query: 700 DFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            F++ G   +       GD     V++ G  IPE+  K VF+RF       Q  G GLGL
Sbjct: 668 KFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGIPEEKQKQVFDRFCKLDEFAQ--GTGLGL 725

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I +      GG + + S     +     +P +
Sbjct: 726 AICQVIAQRFGGEIQLKSEYGKGSRFMLTLPKE 758


>gi|160876397|ref|YP_001555713.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS195]
 gi|160861919|gb|ABX50453.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315268587|gb|ADT95440.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 933

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 184/532 (34%), Gaps = 62/532 (11%)

Query: 275 KSYKIVRVLNSFGE-----AGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQN 325
           + Y++   L   G        IA ++       +               L  +IAIFD N
Sbjct: 39  RFYELEDTLVEQGSNIIEPLSIASEIGLVANDREATKRLLAAAQLNKSTLVKSIAIFDAN 98

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             L   +      +  D   +    +   L        ++    +    +  IFS   S+
Sbjct: 99  NQLFVTSH-----YHKDFEIMRYKEALSTL-----HKTEIEHVGDSLILRTPIFSTGPSA 148

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                      GQ L          G I +  N         K   L++     +     
Sbjct: 149 APANYDIQTDGGQLL----------GYISIIIN---------KERALLEQHRAAVAAFI- 188

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + + G    +            T     +    I  +    ++         L   +I 
Sbjct: 189 -IVLIGVQLNLLF----------TFRLVKNVTQPITEMVRVVAKIREGKLDARLDGNLIG 237

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             D  ++ +      LS+   E           +   +   +    E  L    +   +A
Sbjct: 238 ELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVE--LDLAKKRALEA 295

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y++ I  S+T LL ++N
Sbjct: 296 SRIKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYIKTIERSATNLLGIIN 352

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG M L      L + + +    I+       + + V     +  +   D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFN 740
            R+ QI + ++ NA+ F+  GS  V ++    + +       V + G  I E     +F 
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F        RR  G GLGL I +  +N  GG +  +SS E  +     +P 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524


>gi|217972408|ref|YP_002357159.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS223]
 gi|217497543|gb|ACK45736.1| Hpt sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 933

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 185/532 (34%), Gaps = 62/532 (11%)

Query: 275 KSYKIVRVLNSFGE-----AGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQN 325
           + Y++   L   G        IA ++       +               L  +IAIFD N
Sbjct: 39  RFYELEDTLVEQGSNIIEPLSIASEIGLVANDREATKRLLAAAQLNKSTLVKSIAIFDAN 98

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             L   +      +  D   +    + + L        ++    +    +  IFS   S+
Sbjct: 99  NQLFVTSH-----YHKDFEIMRYKEALNTL-----HKTEIEHVGDSLILRTPIFSTGPSA 148

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
                      GQ L          G I +  N         K   L++     +     
Sbjct: 149 APANYDIQTDGGQLL----------GYISIIIN---------KERALLEQHRAAVAAFI- 188

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            + + G    +            T     +    I  +    ++         L   +I 
Sbjct: 189 -IVLIGVQLNLLF----------TFRLVKNVTQPITEMVRVVAKIREGKLDARLDGNLIG 237

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             D  ++ +      LS+   E           +   +   +    E  L    +   +A
Sbjct: 238 ELDLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVE--LDLAKKRALEA 295

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y++ I  S+T LL ++N
Sbjct: 296 SRIKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYIKTIERSATNLLGIIN 352

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD + ++AG M L      L + + +    I+       + + V     +  +   D 
Sbjct: 353 DILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVDIAPNVPDNVNGDA 412

Query: 685 QRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFN 740
            R+ QI + ++ NA+ F+  GS  V ++    + +       V + G  I E     +F 
Sbjct: 413 MRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTGIGIDESQQDFLFQ 472

Query: 741 RFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F        RR  G GLGL I +  +N  GG +  +SS E  +     +P 
Sbjct: 473 AFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFWFSLPL 524


>gi|126699096|ref|YP_001087993.1| putative two-component sensor histidine kinase [Clostridium
           difficile 630]
 gi|115250533|emb|CAJ68357.1| Two-component sensor histidine kinase,sporulation-associated spo0A
           [Clostridium difficile]
          Length = 915

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 119/641 (18%), Positives = 246/641 (38%), Gaps = 71/641 (11%)

Query: 193 SVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEG---------IVFQKAIGESRK 242
            + +   D++   VW   D   +I + N  +K     +          I   + + E  K
Sbjct: 278 ELLRQALDTIPN-VWIVTDYDFNISYTNNKFKDEFSKDMNNYYKILTFIKEDEKVAEKLK 336

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
            F  +I          +K +  ++S  +  +N    +  + N      I ID      + 
Sbjct: 337 KFDNDISIIDKLVELNDKIYLLSLSNNKDESNYLISLNDITNE-----IKID----EEIR 387

Query: 303 DQLTHTYEILHNLTVAIAIFDQNR-----YLQFHNRSFVELWE----------IDLAFLA 347
           +       I+ N+   I +           +   N+ + + ++          ++  F  
Sbjct: 388 NINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCVSSDLVDMTLEQYFET 447

Query: 348 TNPSNDELLEFLR---SANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            N    +  EF R   +  K  E +++  T    +  V   SE  +    +  G      
Sbjct: 448 FNIDFFDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEEVRVGDYW--- 504

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPA 462
             S+ +   +  F ++T ++++    N    +  + +D + E + +      R+  +N A
Sbjct: 505 --SDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLSTSRVLYTNRA 562

Query: 463 FRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAI----ITSFDDERKSLQGT 517
           FR L+    + L   T   RNI     +Y N  +  +   +I      +   E K +  T
Sbjct: 563 FRELFGISSDVLGVTTQKYRNIL--VKKYINNLNIGEREKSIHIVNENNHIKEVKMISRT 620

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L           I  L             +S R ++AL ++     + D++K  F  ++S
Sbjct: 621 LYFGQKRSRVRIIKDLS---------VQRESERLKKALIKQR----QYDQMKMEFYANIS 667

Query: 578 YELRSPLTNIIGFTDLLKT----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
           +EL++PL NI     L++      K+        ++++    +   LL L+++I++++ V
Sbjct: 668 HELKTPLNNIYSSVQLIENLYKKGKIIDFQDILKEHIKITKQNMFRLLRLIDNIINISQV 727

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
            + I K+      + D+   +  SI++      I +   +D +      D + + +I   
Sbjct: 728 KSDIYKIKAVNFDIIDITERIVTSISSYAKSKGIDLIFDTDEETVMVGLDPESIERIILN 787

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QR 751
           ILSNA+ F+ +G  +++   + +      +K+ G  I ++    +FNRF    + G    
Sbjct: 788 ILSNAIKFTLEGGEILVGIYKKDETVEIIIKDTGVGIDKEKLNDIFNRFKQIENSGISNE 847

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            G G+GL + +S I +  G + I S     T++    P KE
Sbjct: 848 FGSGIGLCLTKSLIEIQNGKIYIDSKVGEGTSVKIIFPIKE 888



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 103/295 (34%), Gaps = 33/295 (11%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           ++ +     + L  +     + D +  + + N  F + +  D+       +  ++L F++
Sbjct: 273 IDQRKELLRQALDTIPNVWIVTDYDFNISYTNNKFKDEFSKDMN------NYYKILTFIK 326

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
              K+ E+L  K +  +I  + K  E +   + L        +  +      +    ++T
Sbjct: 327 EDEKVAEKL--KKFDNDISIIDKLVELNDKIYLLS-------LSNNKDESNYLISLNDIT 377

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-----RIKLSNPAFRSLWKT-----E 470
            ++ ++ +   + K     I ++   + V   +G     ++   N  +   +K       
Sbjct: 378 NEIKIDEEIRNINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCVSSDLV 437

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLE 527
           +  L       NI    +R +   +      A I S++D    +   +   S+    V E
Sbjct: 438 DMTLEQYFETFNIDFFDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEE 497

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS-----FVQHVS 577
             +    +   +   +   D  +    L   NE     +++ +      F++ +S
Sbjct: 498 VRVGDYWSDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLS 552


>gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 915

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 190/487 (39%), Gaps = 45/487 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N        S + L       +   P   +   +        E +  K+
Sbjct: 206 SLPMGVTIIDENG------HSLISLTG-PDGIIKAEPRWMQERSWFGYTPGFRELVLKKS 258

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              +  S+  S               L+ I+ +   G  ++    +  +           
Sbjct: 259 LPPSSLSIVYSV-PVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ 317

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 318 RLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQII 373

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I  L +  T        
Sbjct: 374 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST-------- 415

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 416 -RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 471

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 472 DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 531

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 532 LGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRD 590

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 591 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 650

Query: 784 INCRIPS 790
              RIP 
Sbjct: 651 FTLRIPL 657


>gi|29832107|ref|NP_826741.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29609225|dbj|BAC73276.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1383

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 118/261 (45%), Gaps = 16/261 (6%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
               +  R+   L EK   L  + + K+ F+ ++S+ELR+PL +++    LL  +  G L+
Sbjct: 913  QQAELQRSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLS 972

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             ++ Q+   I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +      
Sbjct: 973  DQEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTI 1032

Query: 664  ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------- 712
            +  +   V     +     +D QRL QI   +LSNA+ F++ G  V L+           
Sbjct: 1033 DRGLAFDVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTASG-RVELRVGRVKDPEHRY 1091

Query: 713  -ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
               D+ + I F+V + G  I  +    +F  F        R   G GLGLSI      L 
Sbjct: 1092 TREDSEEVIAFAVSDTGIGIAPEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLL 1151

Query: 769  GGHVSISSSDEGVTTINCRIP 789
            GG +   S     +T    +P
Sbjct: 1152 GGRIIAESVPGKGSTFTLYVP 1172


>gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with
           RcsB, regulates colanic capsule biosynthesis [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 948

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQI 405

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 406 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 448

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 449 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 503

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 504 VERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRK 563

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V+
Sbjct: 564 QLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVR 622

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 683 QFTLRIPL 690


>gi|332306269|ref|YP_004434120.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173598|gb|AEE22852.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 573

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 13/253 (5%)

Query: 550 RAERALTEKNE-ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             ER L  ++E   + A E K++F+ ++S+E+R+P+  +IG  +L+  ++   LN+ Q  
Sbjct: 177 EIERDLAIQHELEAKAATETKSAFLANMSHEIRTPMNGVIGMIELVSQTE---LNTDQKN 233

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+     S+  LL ++NDILD + ++ G + + +    L     E+         +  + 
Sbjct: 234 YLATAKRSADSLLIIINDILDFSKIEVGELTIEFVEFDLEQFFEELLHDQHFHARKKGLT 293

Query: 669 IKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVK 724
           + +   D      V D  R+ QI + +LSNA+ F+  G   +   L    DN      +K
Sbjct: 294 LALSKGDFHHRHVVGDPYRITQIMNNLLSNAIKFTESGGITVHYDLVTLGDNLQLKVEIK 353

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + E     +F+ F        R   G GLGLSI +    L  G +S+ S     +
Sbjct: 354 DTGIGVSETALPFLFDSFSQADTSTTRKFGGTGLGLSITKQLCELMNGDISVKSQLNQGS 413

Query: 783 TINCRI---PSKE 792
           T +  +   P ++
Sbjct: 414 TFSFSVRLKPPRQ 426


>gi|59712986|ref|YP_205762.1| sensory transduction protein kinase [Vibrio fischeri ES114]
 gi|59481087|gb|AAW86874.1| sensory transduction protein kinase [Vibrio fischeri ES114]
          Length = 1146

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 84/414 (20%), Positives = 169/414 (40%), Gaps = 32/414 (7%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  +G  + + E  T+  +    Y+    +    I+H+S+G+AV     ++   N
Sbjct: 596  RLVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHISQGIAVVDKQMKLVAWN 655

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              +  L+      +  G  I ++    +       G             ER++   +  +
Sbjct: 656  QRYLELFTFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEMHVKRRVEHLERRTRHVSSRV 715

Query: 521  LSDS-VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
             +D  V+E    P+PN   +++F ++T   +AE+AL E NE L                 
Sbjct: 716  RADGQVIEVQGNPMPNGGFVMSFTDITVFRQAEKALKETNETLESRVHERTKELEKLNQR 775

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K   +  VS++L  PL     F   L          K S ++E   
Sbjct: 776  LVGATQSAELASQSKTRLLAAVSHDLMQPLNAARLFASSLNEVAKDQETQKISGHIESAL 835

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++     L+ D+LD++ ++AG ++ +     L  L + ++        + +I   VI  
Sbjct: 836  GAAE---ELIGDLLDISRLEAGKLETHIQGFSLGALFSNLEAEFGALAKQQDIDFSVIHS 892

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              +    +D + L ++    L+NA  ++ +G  V+L A R        V +NG  IPE+ 
Sbjct: 893  DVV--VESDSKLLRRVVQNFLTNAFRYNPQG-KVVLGARRVGDQIRIDVWDNGIGIPEEK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +++F+ F         +G+GLGL+I     ++ G  +S+ S  +  +  +  +
Sbjct: 950  QQAIFDEFTRVDQSRADQGLGLGLAIARGISHVLGHTISLRSWLDKGSVFSVTL 1003



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 69/213 (32%), Gaps = 10/213 (4%)

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
           ++   ++ + F  +  + +                +  G        R++ +    G  +
Sbjct: 550 RRRAQKAFRQFSNQQGETLQPQQQASSALIRHTERVLAG-VFGASSSRLVLTSALQGRNM 608

Query: 294 DVSKEITVNDQLTHTYEI--------LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            + +  T+ D+ +  Y+         + +++  IA+ D+   L   N+ ++EL+      
Sbjct: 609 QLEEVATIVDEASELYDFSRGLLQGAIEHISQGIAVVDKQMKLVAWNQRYLELFTFPPGL 668

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +       +++             + +   +      +    H  +    +GQ + V   
Sbjct: 669 IQVGRPIADVIRHNAEQGLCG-PGDPEMHVKRRVEHLERRTRHVSSRVRADGQVIEVQGN 727

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
             P GG +  F ++TV    E       +    
Sbjct: 728 PMPNGGFVMSFTDITVFRQAEKALKETNETLES 760


>gi|93005211|ref|YP_579648.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
 gi|92392889|gb|ABE74164.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
          Length = 1169

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 137/326 (42%), Gaps = 14/326 (4%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I  +     R + ++    +        +  ++ L  TL  L  S  E       
Sbjct: 218 RWIAPIYELRLQLQRTHVDNLYQPIPVESNGELNLLQQDLVRTLRRLYVSFQELKEHAEQ 277

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               +    +  +      ++    +A     + K++F+ ++S+ELR+PL +I GF +LL
Sbjct: 278 TEDDLRLAFDEMEMQNI--SIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLL 335

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G LN +Q  YV+ I  SS  LL LVND+LD + ++AG + L+     L D + +V
Sbjct: 336 ARH--GELNPEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDRHEFDLYDTIYDV 393

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++    E  +R+ V+    +      D  RL Q+ + I+ NA+ F+  G  V+  + 
Sbjct: 394 VDMLSPVSAEKGLRMAVLFYNDVPMRINGDALRLKQVLTNIVGNAIKFTDSGDVVVRVSL 453

Query: 714 RD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHG 769
            D  +   + SV+++G  I     K +F  F         Q  G GLGL I +    L G
Sbjct: 454 DDYQDNYLMISVQDSGKGISLSDQKMLFQSFSQGDPSITRQYGGTGLGLVISKQLTRLMG 513

Query: 770 GHVSI-----SSSDEGVTTINCRIPS 790
           G +        +      T   R+P+
Sbjct: 514 GDIGFYDNMQENISNQGATFWFRMPA 539


>gi|315647521|ref|ZP_07900623.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
 gi|315276960|gb|EFU40301.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
          Length = 1015

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 4/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA   +   +E L   D++K+ F+   S+ELR+PL  IIG  D L     G L S     
Sbjct: 379 RAFSQVERLSERLLTLDKLKDEFLAKTSHELRTPLHGIIGLADALIDGSSGKLPSPVVDL 438

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  S   L +LVNDILD + +    + L   T+ L   +    Q +     +  + +
Sbjct: 439 LRLMKVSGQRLAHLVNDILDFSKLKHQEIGLVIVTVNLRLSVELTLQVLNPLAQKKGLLL 498

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                  +   +AD  RL QI   ++ NA+ ++ +  TV + A R  G     + + G  
Sbjct: 499 SHQLPDDI-YVMADENRLQQILHNLIGNAIAYT-ENGTVTVTARRMYGQVSVQISDTGIG 556

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I E     +F  F      HR Q+ G G+GLSI +  I LH G + ++S     +T +  
Sbjct: 557 IAEADQVRIFESFEQVDPLHRSQQGGTGIGLSITKKLIELHDGSIGVTSRLGEGSTFSFT 616

Query: 788 IPS 790
           +P 
Sbjct: 617 LPL 619


>gi|306833966|ref|ZP_07467090.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338]
 gi|304423967|gb|EFM27109.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338]
          Length = 450

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 145/386 (37%), Gaps = 32/386 (8%)

Query: 416 FENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENR 473
             +L+    L  +     K      + ++++GV      G I + N  A + L    E  
Sbjct: 75  LNDLSTVFRLAQENLAQEKNRLASILSYMTDGVLATDRAGNITMINQTALQQLNLEHEEA 134

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L    +I +I    S Y       DL +       + R    GT E ++  +  +++   
Sbjct: 135 LQM--NIVDILGADSTY----SYHDLVSKTPEIVLNRR---DGTGEFITLRI-RFALNRR 184

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +         + D+   E+            D  +  FV +VS+ELR+PLT++  + + 
Sbjct: 185 DSGFISGLIAVLHDTTEQEKE-----------DRERRLFVSNVSHELRTPLTSVKSYLEA 233

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L    L    +    +++     +  ++ +++D+L+L+ +D   ++L          +  
Sbjct: 234 LDEGALKEDIAP--SFIKVSLDETNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTS 291

Query: 654 VKQSI-----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +            +      I      K      D  ++ Q+   IL+NA+ +S  G  +
Sbjct: 292 ILNRFDQIKSQHTISGKQYEIVRDYPIKSIWLEIDPDKMTQVLDNILNNAIKYSPDGGKI 351

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            +         I S+ + G  IP+     +F+RF          + G GLGL+I +  + 
Sbjct: 352 TVSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVK 411

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            H G +   S+    +T    +P ++
Sbjct: 412 QHKGFIWAQSTYGKGSTFTIVLPYEK 437


>gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2]
 gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2]
          Length = 918

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELNTTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L++V   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNG 727
              +  + + D  RL Q+ + ++ NA+ F+ +G  + +   +             +++ G
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFT-EGGNIDILVEKRALSNTKVQIEVQIRDTG 453

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T  
Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFW 513

Query: 786 CRI 788
             I
Sbjct: 514 FHI 516


>gi|329769298|ref|ZP_08260714.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325]
 gi|328839101|gb|EGF88686.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325]
          Length = 615

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 170/424 (40%), Gaps = 24/424 (5%)

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY-NTLVK 434
           + + S  +       T    N  T+  I T++  G    +F  ++ ++  E     T  +
Sbjct: 203 KTVTSSIEKMSAQVKTMASGNYGTVVGINTNDEIGDLAKVFNQISKRIKEEQDVTETERR 262

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNE 493
                I+ + +G+     +G++ L N +   +    EN +  G     +          E
Sbjct: 263 RLATIIESMMDGIITTDTNGKVILINTSAGDMIDAPENEILIGKDALKLLNISEYESIGE 322

Query: 494 SDGWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
               +    +  S DDE   L+    ++L +   + S +       ++   +VT+  R E
Sbjct: 323 IIEAEDSLLVNASEDDEGLLLRAEFSKILKEENEDLSQVSTELEGYIIVLYDVTEQERQE 382

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   E              FV  VS+ELR+PLT +  + + L+   +        Q+++ 
Sbjct: 383 RERRE--------------FVSTVSHELRTPLTTMNSYIEALEEGVIND-KELAPQFIDT 427

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T ++ +VN+++ L  +D      +   I +N L+ ++         E N      
Sbjct: 428 IHKETTRMIRMVNELMQLGKMDIKEEHYDKEFIDINKLIEQISDRFELTHPEKN--FIKY 485

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSI 730
                     D+ +L Q+F  I++NA+ +S  G  + ++  ++  +     S+K+ G  I
Sbjct: 486 IPKTPIFVEGDQDKLTQVFDNIINNAIKYSPNGKNITIRVRQNYNHNRVSISIKDEGVGI 545

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      +FNRF       QR   G GLGL++ ++ +  H G +   S +   + I   +
Sbjct: 546 PLVHIDKIFNRFYRVDKSRQRTMGGTGLGLALAKNIVEAHRGRIWAQSREGYGSIIFVTL 605

Query: 789 PSKE 792
           P ++
Sbjct: 606 PCED 609



 Score = 38.4 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 79/280 (28%), Gaps = 26/280 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            ++     +      I+ ++   I   D N  +   N S  ++ +     +       +L
Sbjct: 252 EEQDVTETERRRLATIIESMMDGIITTDTNGKVILINTSAGDMIDAPENEILIGKDALKL 311

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           L      +         +   N     +      +   +   +   +   S    G I +
Sbjct: 312 LNISEYESIGEIIEAEDSLLVNASEDDEGLLLRAEFSKILKEENEDLSQVSTELEGYIIV 371

Query: 416 FENLTVQV-----------DLETKYNTLVKVQGETIDHLSEGVA--------VFGPDGR- 455
             ++T Q             +  +  T +      I+ L EGV               + 
Sbjct: 372 LYDVTEQERQERERREFVSTVSHELRTPLTTMNSYIEALEEGVINDKELAPQFIDTIHKE 431

Query: 456 ----IKLSNPAFR--SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
               I++ N   +   +   EE+       I  +    S  +  +     F   I     
Sbjct: 432 TTRMIRMVNELMQLGKMDIKEEHYDKEFIDINKLIEQISDRFELTHPEKNFIKYIPKTPI 491

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
             +  Q  L  + D+++  +I   PN + +   V    + 
Sbjct: 492 FVEGDQDKLTQVFDNIINNAIKYSPNGKNITIRVRQNYNH 531


>gi|218710854|ref|YP_002418475.1| sensor histidine kinase [Vibrio splendidus LGP32]
 gi|218323873|emb|CAV20234.1| sensor histidine kinase [Vibrio splendidus LGP32]
          Length = 1150

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 175/414 (42%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 603  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVIDKQMRLVAWNQ 662

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 663  RYLELFEFPAGLIQVGRPISDVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGTRHTSSRI- 721

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL----------------- 562
                 V+E    P+P+   +++F ++T   +AE+AL + NE+L                 
Sbjct: 722  RPDGRVIEVQGNPMPSGGFVMSFTDITVFRQAEQALKDANESLESRVHERTQELEKLNHR 781

Query: 563  --------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                     +  + K+ F+  VS++L  PL     F   L          + S ++E   
Sbjct: 782  LVKATQISDQESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEQEEKQLSSHIESAL 841

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G ++ N   I ++D+L  +    +    +  I+ ++I  
Sbjct: 842  GAAE---DLIGDLLDISRLESGKLETNVHAIAVHDVLTNLNAEFSALATQQKIQFQMI-- 896

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++ +G  V+L A R NG     V +NG+ I ED 
Sbjct: 897  PSSLFIHSDPKLLRRVIQNFLTNAFRYNPEG-KVVLGARRVNGQVRIDVWDNGTGIDEDK 955

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F   +     +G+GLGL+I +   ++ G  +S+ S     +  +  +
Sbjct: 956  QQEIFEEFTRGSQVRADQGLGLGLAISKGIAHVLGHQISMRSWPGEGSVFSITL 1009



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 623 VDEASELYDFSRGLLQGAIEHIGQGIAVIDKQMRLVAWNQRYLELFEFPAGLIQVGRPIS 682

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 683 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGTRHTSSRIRPDGRVIEVQGNPMPSGGFV 741

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV    E       +    
Sbjct: 742 MSFTDITVFRQAEQALKDANESLES 766


>gi|323691897|ref|ZP_08106150.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323504049|gb|EGB19858.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 916

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 112/585 (19%), Positives = 211/585 (36%), Gaps = 69/585 (11%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFGE---AGIAIDVSKEITVNDQLT 306
           +      +    E     ++G  K   +    +    GE    G+ +DV+ E     +  
Sbjct: 59  LADRGRGDTIRDEHRLVCKNGKIKWISLKAQLMSGDDGERYFYGVFVDVTDEKLAQKRAG 118

Query: 307 HTYE-----ILHNLT-----VAIAIFDQNRYLQFHNRSFVELWEIDLAF------LATNP 350
             YE      +   +            Q+R   +H+     + +    +      LA   
Sbjct: 119 ELYEKELAYFVQAASAEGSIQGRVNITQDRVESYHSTEAAAITQKGETYEKAIGKLAAAA 178

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----S 406
           S  E  ++LR+A      +         F+  K++   +      +G             
Sbjct: 179 SEPEYGKYLRTALDRANVV-------AEFAAGKNNYDFEYLRKRKDGGIFWSRTNFRFYQ 231

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR-- 464
           NP  G +  F   +   + + +   L KV     + LS+          I + N  +   
Sbjct: 232 NPESGDLIEFFYTSDVTEQKIQRQLLSKVTELDYELLSD----------IDIRNDTYHVV 281

Query: 465 -SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
            S    E      G            + +E    +    +   +        G+   ++ 
Sbjct: 282 SSHPGAEGMMPEKGRFQAEAVKIAVSFMDEDAAQEYLTKLDPEYMKRELDGHGSYNFMTQ 341

Query: 524 SVLEYSIIPLPNAQTMLT----------FVNVTDSVRAERALTEKNEALRKA----DEIK 569
           +  E+  + +   Q                +VTD +R E+   E   A   A    +  K
Sbjct: 342 TRDEHGAVRVKRYQVFYISRELERVCIARTDVTDIIRQEQQQKEALAAALTAAEQANAAK 401

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
             F+  +S+E+R+P+  IIG + +   +     + + ++ +  I  SS  LL+L+NDILD
Sbjct: 402 TDFLSRMSHEIRTPMNAIIGMSAIAAQAVGN--DEQVAECISKIGISSRFLLSLINDILD 459

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           ++ +++G M L    I   D LN +     ++     +  + I+D  L      D  +L 
Sbjct: 460 MSRIESGKMLLKNEKIPTEDFLNGLNAICYSQAASKGVDYECIADPTLDDVYTGDAMKLQ 519

Query: 689 QIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           Q+   ILSNA+ F+ +G  V   A      R+     F+V +NG  I ED  + +F  F 
Sbjct: 520 QVLLNILSNAIKFTGEGGKVTFSAMVRRKVRNMAGLRFTVNDNGIGIGEDFLRHMFEPFA 579

Query: 744 SNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             +        G GLGL+I +S +++ GG +++ S     +    
Sbjct: 580 QESMGTTALYGGTGLGLAISKSIVDMMGGTITVRSIKGIGSEFTV 624


>gi|328541656|ref|YP_004301765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326411408|gb|ADZ68471.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 773

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 23/384 (5%)

Query: 422 QVDLET------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           +  LE       +     + Q   +  L + V      G +  +N A    +    +   
Sbjct: 118 RRRLEALEDTAWELKESDERQASILQALGDIVIRRDAAGLVIYANAAALETFP-PAHMPE 176

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G  +    A       ++   D       +F D R          S   +         
Sbjct: 177 IGRPLMLPRAAPREAGADAPRDDF------AFGDLRLDTVHGPRWFSRLDVTVRDDATET 230

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                   +VTD    E  L    +    A+E K+ F+  VS+E+R+PL  I+G   LL 
Sbjct: 231 PVVQTVLRDVTDRRLIEEDLLAARQNAESANEAKSRFLATVSHEIRTPLNGILGMAALLS 290

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++   L  +Q+ Y++ + +S   LL L++++LD +  +AG + +  +   L  L+  V 
Sbjct: 291 DTR---LTPEQAAYIKALESSGETLLMLIDELLDFSRAEAGRLVVQPAPAALAPLVENVA 347

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILK 711
           + +A + H   + I V     L  +   D  RL QI   +  N + F+ +G     V  +
Sbjct: 348 ELLAPRAHAKGLEIAVRLHPHLPQTVTVDASRLRQILFNLAGNGIKFTDRGGVAVEVDGR 407

Query: 712 AARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
            A D G  +  +V++ G     +  + +F  F    H    +  G GLGL+I +  + L 
Sbjct: 408 PAPDGGTLLDIAVRDTGIGFRPEDAERLFGEFEQVDHGPARRYGGTGLGLAIAQRLVTLM 467

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG ++ +S++         +P  E
Sbjct: 468 GGTIAATSAEGAGAVFRVVLPVPE 491



 Score = 41.5 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 26/185 (14%)

Query: 160 SGSCAFLRILSLD----------------GIYSELAETTLKCKKLSNHISVFKVLFDSLD 203
           +G  A  R+ + D                G+   L        +L         +  +L 
Sbjct: 87  AGGLAVWRLTADDRSRLLSAAAGRAAEIAGLRRRLEALEDTAWELKESDERQASILQALG 146

Query: 204 FLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
            +V  RD AG +++AN +     ET        IG    L +   ++    +   +  F 
Sbjct: 147 DIVIRRDAAGLVIYANAA---ALETFPPAHMPEIGRPLMLPRAAPREAGADAPRDDFAFG 203

Query: 264 ETVSTLEHGNNKSY---KIV---RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
           +      HG  + +    +        +     +  DV+    + + L    +   +   
Sbjct: 204 DLRLDTVHGP-RWFSRLDVTVRDDATETPVVQTVLRDVTDRRLIEEDLLAARQNAESANE 262

Query: 318 AIAIF 322
           A + F
Sbjct: 263 AKSRF 267


>gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1339

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 16/304 (5%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                + +  +E +  Q  L+  +  + E +   L  +Q            +A + L  + 
Sbjct: 711  LTGELQARSEELQVQQEELQRSNAELEEKAA--LLASQNSDIEAKNLQIEQARQELEARA 768

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + L  A   K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y   I ++ + 
Sbjct: 769  QQLSLASTYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTPKQVEYAGIIHSAGSD 828

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LL L+NDILDL+ V+AG M +N   + L  LL+ V  +      + ++   V +     +
Sbjct: 829  LLQLINDILDLSKVEAGKMDINPERVHLPQLLDYVDATFRPMTTQKSLDFTVTTAPDAPA 888

Query: 680  -FVADRQRLLQIFSKILSNAMDFSSKGST-----------VILKAARDNGDFIFSVKNNG 727
              + D  RL QI   +LSNA+ F+ +G             +     R      F V++ G
Sbjct: 889  DLLTDDSRLRQILRNLLSNAVKFTERGGVELRIEPAAGSEIPAGLRRRGAIVAFRVRDTG 948

Query: 728  SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              IPE   +SVF  F         +  G GLGLSI      L GG V+  S+    +T  
Sbjct: 949  IGIPEQQLESVFGAFQQADGTTSRKYGGTGLGLSISREIAQLLGGAVTAESTPGQGSTFT 1008

Query: 786  CRIP 789
              +P
Sbjct: 1009 LYLP 1012


>gi|121727650|ref|ZP_01680753.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|153828559|ref|ZP_01981226.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|229523849|ref|ZP_04413254.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|254285229|ref|ZP_04960194.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|297579350|ref|ZP_06941278.1| sensor histidine kinase [Vibrio cholerae RC385]
 gi|121630037|gb|EAX62444.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|148875954|gb|EDL74089.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|150424501|gb|EDN16437.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|229337430|gb|EEO02447.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|297536944|gb|EFH75777.1| sensor histidine kinase [Vibrio cholerae RC385]
          Length = 736

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 173/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 149 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 204

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 205 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 262

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 263 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 322

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 323 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L  KQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 383 LKDE---LTPKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 498

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +    R
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR 578


>gi|322419914|ref|YP_004199137.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320126301|gb|ADW13861.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 869

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 96/659 (14%), Positives = 225/659 (34%), Gaps = 55/659 (8%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKK- 224
           +I +   +  ++       + L    + F   F +   L        G  +  N ++++ 
Sbjct: 226 KISNFIAVTEDITAHKRAEEALRESENKFSKAFQAAPELFTISSLAEGRYIEVNEAFERT 285

Query: 225 ----NTETEGIVFQK-AIGESRKLFKEEIK--KRMISSSALEKNFCETVSTLEHGNNKSY 277
                 E  G   ++  I  +     + ++  +        E +F     T+  G   S 
Sbjct: 286 LQYSRDEVVGHTPREFGIWVNPDDRDQVVRMLREQRRVRDFETSFRSKAGTVIVG-LLSA 344

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNR 333
           +I+ +        I  D++      + L         +  +  + I   D    +   N 
Sbjct: 345 EIIEIKGEECLVAITKDITARKLSEEALRFSEARYRALFRDNPIMIVTLDTELTMLAVNP 404

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +        ++ L        +LE     + L         ++ +  +    + H+  + 
Sbjct: 405 TCASQLGYTISELEGR----SVLELFHEDDHL------AVTEQLLACLQDPGQVHRWQFR 454

Query: 394 --LPNGQTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
               +G  + V   +      N     +   +++T +   E       +    T +  + 
Sbjct: 455 KVRKDGSLIWVEEIAQGVYDLNGSLNILVCCQDVTERKRTEEALQESEERFRATFNQAAV 514

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           G+   GPDGR+ L N  +  +    E  L     ++ I        +      +    + 
Sbjct: 515 GIGHVGPDGRVLLVNQKYCDIVGYSEEELKARK-VQEITHPDDLETSMIHFQHMLEGTLG 573

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNE 560
           S+  E++ ++   +  S   ++ ++  + +A       +    ++T+  +AE  +   N 
Sbjct: 574 SYSLEKRYIR---KDGSTVWVDLTVSTVVDAGGKLKFAVGVVADITERKQAEEKIRILNA 630

Query: 561 ALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L          ++  ++F    +++LR PL  I G+   +K      L+ +  +Y++  
Sbjct: 631 ELEARAAELELANQELDAFNYTSAHDLRQPLNTINGYCQEIKERCGDKLDEQCLRYLDET 690

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  +  L+  +L+ + V    ++ +  T+ L  + NE+   +     E  + +++  
Sbjct: 691 YNGTLRMNRLIEALLNFSRV--ARIEPHRETVDLFSMANEIAMELKLADPERRVTLRI-- 746

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFS--SKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                    D   L  +   ++ NA  ++   +   + L     +G   F V++NG    
Sbjct: 747 -ADGIRVDGDATLLRVVLDNLIGNAWKYTSKQEEGVIELGMTEIDGKPAFFVRDNGIGFD 805

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  F   +     RG G+GL+ VE  I  HGG V               +P+
Sbjct: 806 MSEADKLFLPFHRLSGAEIYRGFGIGLATVERIIRRHGGRVWAEGEPGNGACFYFTLPA 864



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/390 (14%), Positives = 120/390 (30%), Gaps = 34/390 (8%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           +A+  L  +KL   +S F+ +  +    +   D    +L+AN+         G   Q+ +
Sbjct: 9   MAQLELSNQKLQACLSRFQSITTNSPHGILIVDMNRKVLFANLV---AAAIFGCKAQELL 65

Query: 238 GESRKLFKEEIK-KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           G+      +  +   +  +S   K     V  +E         +             D++
Sbjct: 66  GKQVDFLIQPGQITELKLASRDGKTVSVEVWAIE---------MEWNADKAHFIALNDIT 116

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                  +L   Y  +      + I D    ++F N  F E+    +A +A         
Sbjct: 117 DRKMKEQELRKLYRAVLQSPSIVMITDAVGNIEFVNPKFTEVTGYTVAEVAGKNP----- 171

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------R 409
             +  + K P +++ + W+          E         NG+        +P        
Sbjct: 172 -RILKSGKTPPEVHKELWETICAGREWRGEMVN---RKKNGEVYWESAAISPILDIEGKI 227

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWK 468
              I + E++T     E           +      E   +    +GR    N AF    +
Sbjct: 228 SNFIAVTEDITAHKRAEEALRESENKFSKAFQAAPELFTISSLAEGRYIEVNEAFERTLQ 287

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              + +   T             ++          +  F+   +S  GT+ +    +L  
Sbjct: 288 YSRDEVVGHTPREFGIWVNPDDRDQVVRMLREQRRVRDFETSFRSKAGTVIV---GLLSA 344

Query: 529 SIIPLPNAQTML-TFVNVTDSVRAERALTE 557
            II +   + ++    ++T    +E AL  
Sbjct: 345 EIIEIKGEECLVAITKDITARKLSEEALRF 374



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 89/294 (30%), Gaps = 41/294 (13%)

Query: 294 DVSKEITVNDQ-----LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           D+  ++ +++Q     L+    I  N    I I D NR + F N     ++      L  
Sbjct: 7   DIMAQLELSNQKLQACLSRFQSITTNSPHGILIVDMNRKVLFANLVAAAIFGCKAQELLG 66

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-- 406
                              Q+++      I  +  +S          +G+T+ V V +  
Sbjct: 67  K------------------QVDFLIQPGQITELKLASR---------DGKTVSVEVWAIE 99

Query: 407 ---NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
              N          ++T +   E +   L +   ++       V +    G I+  NP F
Sbjct: 100 MEWNADKAHFIALNDITDRKMKEQELRKLYRAVLQS----PSIVMITDAVGNIEFVNPKF 155

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             +       ++        +       ++     + A      +   +   G +   S 
Sbjct: 156 TEVTGYTVAEVAGKNPRILKSGKTPPEVHKELWETICAGREWRGEMVNRKKNGEVYWESA 215

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           ++     I    +  +    ++T   RAE AL E      KA +         S
Sbjct: 216 AISPILDIEGKISNFIAVTEDITAHKRAEEALRESENKFSKAFQAAPELFTISS 269


>gi|225027633|ref|ZP_03716825.1| hypothetical protein EUBHAL_01890 [Eubacterium hallii DSM 3353]
 gi|224955042|gb|EEG36251.1| hypothetical protein EUBHAL_01890 [Eubacterium hallii DSM 3353]
          Length = 606

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 114/249 (45%), Gaps = 11/249 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L +K +    A   K+ F+ H+S+++R+P+  ++G  D+ +         K    + 
Sbjct: 208 QRLLQKKTQDAEAAVRAKSEFLSHMSHDIRTPINGMMGMLDIAQAHLNNP--EKMDLCLS 265

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  ++  LL+L+ND+LD++ ++ G ++L      +  LLN           E ++ I+ 
Sbjct: 266 KMRGAADQLLSLINDVLDMSKIETGSIQLVEEPFDMIRLLNGTLAVQEIIASEKSLTIEQ 325

Query: 672 ISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFS--VK 724
             +G  +          +  I   I+SNA+ +++ G  + + A     D     F   V 
Sbjct: 326 DIEGAIEHPCVCGSPNYVRSILVNIISNAIKYTNPGGDIFVSARELSCDGEYVKFEFIVS 385

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + E+  + +F  F      +R   +G GLG+SIV++ IN   G +++ +     +
Sbjct: 386 DTGIGMSEEFAEHIFEPFTQEHAENRSSYQGTGLGMSIVKNLINKMKGTITLETKQGEGS 445

Query: 783 TINCRIPSK 791
           T    +P K
Sbjct: 446 TFTITLPVK 454


>gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 910

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 153/393 (38%), Gaps = 39/393 (9%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
               +   E  D  SE V V   D  ++   N +   L   EE  +       N      
Sbjct: 371 RNAERKFVEIFDATSEAVLVCDIDTLQVLEFNRSSELLLGAEEQLVKLTDLRWNFCG--E 428

Query: 489 RYYNESDGWDLFAAIIT-----------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             Y++     L    +             +  E+     TL  +    ++  ++ + + +
Sbjct: 429 EPYDDQAFQQLIERTVRDGSLTVDWQMKRYSGEKFWAGMTLNYMQIKDVDCLLVVIRDVE 488

Query: 538 TML----------------TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
                                    D  R ++ L    +   +A++ K++FV ++S+E+R
Sbjct: 489 QRHQLAGELEAYKFHLEELVDQKTADLQRFQQDLITAKDEAERANQAKSTFVANMSHEIR 548

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  ++G   LL+ +   SL+  Q  YV  I  S   LL  VNDILD A ++AG +++ 
Sbjct: 549 TPLNGVLGLAQLLEKT---SLSVDQRSYVRRILDSGQQLLTTVNDILDFAKMEAGRLEIE 605

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            S   L+ LL  V  S+  +   +      ++ G   + + DR R+ Q+   +L NA+ F
Sbjct: 606 ESGFSLHALLQPVIDSVFVEEESSPKFCLDVAPGIPENLIGDRFRIGQVLINLLGNALKF 665

Query: 702 SSKGST----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
           + +G      V +          FS+ + G  I  D+ K +F  F            G G
Sbjct: 666 TKEGHVSLHVVSMGLGEKGVILKFSIIDTGVGIALDVQKQLFVPFTQADSSVTRNYGGTG 725

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +   GG + + SS    +T    +
Sbjct: 726 LGLTICKKLVVAMGGDIGLESSPGAGSTFWFTL 758


>gi|313634988|gb|EFS01372.1| sensor protein kinase WalK [Listeria seeligeri FSL N1-067]
          Length = 610

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 151/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 241 GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 300

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      +      ++    +  S   +R +      L ++    +
Sbjct: 301 VK-HESANGRSIIDVLDIGDNF-----QFEDLMEVDGSLTMDRSTSDKPYILRAN----F 350

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 399

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 400 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 458

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 459 DFFNHIIDX-XXMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 517

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   ++F+RF  V  A   +  G GLGL+I    I 
Sbjct: 518 SFYLKKYENEIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREMGGTGLGLAIAREVIE 577

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 578 AHGGRIWAERNKSKGTIIKFTLP 600


>gi|266619432|ref|ZP_06112367.1| sensory box sensor histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288869024|gb|EFD01323.1| sensory box sensor histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 502

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 119/251 (47%), Gaps = 9/251 (3%)

Query: 545 VTDSVRAERA-LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
             + +R + A +    E     +  K +F+  +S+ELR+P+  ++G  +L        + 
Sbjct: 100 WFNRMRVKSAVMQSSLEKAEAENRAKGAFLSRMSHELRTPMNAVVGLAEL--AGMTEGVP 157

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +  + ASS  LL+L+NDILD++ +D+G+++       L +LL E++  + T+  
Sbjct: 158 ENVREMLVKLRASSHYLLDLINDILDMSRLDSGMLETASEPFSLEELLGELRTMMETEAG 217

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----D 718
           +  +  ++ +D        D  RL Q+   +LSNA  F+ +G TV L+     G     D
Sbjct: 218 KRGLICEMEADVDHSRVTGDSIRLRQVLMNLLSNAFKFTPEGGTVTLRVTEKTGVNGSAD 277

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F F V + G  I  +  + +F+ F     +  + +G GLGL I  S + L GG + + S 
Sbjct: 278 FDFRVTDTGVGIAPEDQERIFDTFEQMGTNYSRSQGTGLGLPISRSIVQLMGGELRVKSE 337

Query: 778 DEGVTTINCRI 788
               +     +
Sbjct: 338 PGHGSEFYFTL 348


>gi|160934993|ref|ZP_02082379.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753]
 gi|156866446|gb|EDO59818.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753]
          Length = 581

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 155/392 (39%), Gaps = 32/392 (8%)

Query: 406 SNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            N  G     F  +  Q     ++           +  + +GV        I L N   +
Sbjct: 216 PNEIGQLAQSFNRMADQTQKAFSELTEQGHQLEAVLQGMDDGVLAVDQYDNILLFNERVK 275

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS-D 523
           +L +    ++        + +  + Y  E+   D               ++  ++L + +
Sbjct: 276 ALLQNSGLKIGEKLDGSIVLSQLAGYLREALETD-------------SVVRKEIKLSNPE 322

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            ++     PL         + V   V   R L           ++++ FV +V++EL++P
Sbjct: 323 RIMTVYAAPLNAEDAKDGGLLVLSDVTEVRKLQ----------QLRSEFVANVTHELKTP 372

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYV-EYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           LT+I GF +LLK+   G  + +  QY  + +   +  L +L++D+L L+ ++     +  
Sbjct: 373 LTSIRGFIELLKS---GDRDEETRQYFYDVLDIEAERLHHLIDDMLVLSQIENAKDDVQT 429

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               LN  +  V +       +N I +++ ++       +   RL Q+F  ++ NA+ ++
Sbjct: 430 VPCNLNQEIETVLRRAKPIAEKNGIVLRLEAEEAFL-VASSPTRLQQLFGNLVENAIKYN 488

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
                V +   R     +  VK+ G  IP++    +F RF        R   G GLGLSI
Sbjct: 489 KPQGRVTVTLQRQRNMVLVKVKDTGIGIPQEHLPRLFERFYRVDSSRSREIGGTGLGLSI 548

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           V+    L+ G VS+ S     +    R+P  E
Sbjct: 549 VKHLAGLYHGDVSVESVVGEGSVFTVRLPLLE 580


>gi|311067865|ref|YP_003972788.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310868382|gb|ADP31857.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 739

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 115/632 (18%), Positives = 252/632 (39%), Gaps = 48/632 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-EGIV 232
           +  +++   +  ++ S +  +FK LFD     +   D+ G  + AN+S+ K+ E  +  +
Sbjct: 134 VMRDISSKKILEREFSMNEQLFKDLFDRAVDGIVLFDREGCFIDANLSFCKSFEIGQNEL 193

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST-LEHGNNKSYKIVRVLNSFGEAGI 291
              + GE      ++  + +  +   +      +   L  G  K ++     N      +
Sbjct: 194 SHLSFGEFIDKTNKKDFQSIWETIHRKGKAKGELPVRLRSGGQKLFEFTITSNIINGFYM 253

Query: 292 AI--DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           +I  D++++ ++  QL        EI  N   AI I+  +  +   N+S  +++E+ +  
Sbjct: 254 SIMRDITEKRSMEIQLFKSEERFREIFENAMDAILIWSDDGRIVKANQSACKIFELPMNQ 313

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L        L +FL  +N+      ++  K+      +  +  +  + + NGQ   +  T
Sbjct: 314 LVQR----NLCDFLVVSNQ-----KYRCTKKKYEKFGEIRD--ELLFQMGNGQFKELEFT 362

Query: 406 SNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           S      G  + +F N++ +  +E +         +  +   +G  +F    RI  +NP 
Sbjct: 363 SKRTILEGQHLTIFRNVSDRKRMEKELRESELKFRKVFNGSMDGNVLFDNKYRIIDANPL 422

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              +       +   + +  I+A        S       A   + ++    +   L    
Sbjct: 423 ASDILGLSHEEIKKHSLLDIISAYDIENLTSS-------ARQINLEEMDNEIPFLLSGKE 475

Query: 523 DSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +  LE+S    +     +  F +VT+    E  L + +                +++E+R
Sbjct: 476 NRKLEFSFKRHIIQNMNLAIFKDVTERKELEERLRKSDTLHVVG-----ELAAGIAHEIR 530

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+T + GF  LL+    GS+    + Y   I++    + +++ + L LA   A    + 
Sbjct: 531 NPMTALKGFIQLLQ----GSVEGDYALYFNVITSELKRIESIITEFLILAKPQA----IM 582

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y    + D++ +    +  + + +N+++ +     +     +  +L Q+F  IL NA++ 
Sbjct: 583 YEEKNVTDIMQDTMDLLHAQANLSNVQMHLDLIETIPPIYCEPNQLKQVFINILKNAIEV 642

Query: 702 SSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
             KG  V +K         + S+++ G  I ED  K +   F       + RG GLGL +
Sbjct: 643 MPKGGNVYVKIQPSGTDHILISLQDEGIGITEDKLKRLGEPFY----TTKERGTGLGLMV 698

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               I  H G +++ S +   T  +  +P ++
Sbjct: 699 SYKIIEEHQGKITVESEEGRGTVFHLTLPLRQ 730


>gi|126656662|ref|ZP_01727876.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           CCY0110]
 gi|126621882|gb|EAZ92590.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           CCY0110]
          Length = 1324

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 107/722 (14%), Positives = 228/722 (31%), Gaps = 107/722 (14%)

Query: 162 SCAFLRILSLDG-IYSELAETTLKCKKLSNHISVFKVLFDSLDF-LVWHRDQAGDILWAN 219
           + A LR       + +       +        +  + L  +L     +  DQ    L   
Sbjct: 175 AAALLRNQQYTQQLLASNTRLVAEESDRKQAEARAEALIANLPGGAAFVVDQELRYLL-- 232

Query: 220 ISYKKNTETEGIVFQKAIGES-RKLFKEEIK-------KRMISSSALEKNFCETVSTLEH 271
            +  +         +  IG +  ++   ++        ++ ++    E            
Sbjct: 233 -AAGEALAIANFKPEDFIGHTIFEVLPPQLAASYEPMYRQALAGEPFEHEHQAHDRWYIS 291

Query: 272 GNNKSYKIVRVLNSFGEAGIAIDV--SKEITVNDQLTHTYEILHNLTVAI----AIFDQN 325
                Y     + +       I      E+ + +       + +++         IFD+ 
Sbjct: 292 RGTPLYDSKAEVYTVLVISYDITDRKQAEVALRESEEKYRSLFNSMDEGYFLVDVIFDE- 350

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
                 N   ++L+ ID    A   +        R     P    +  W E    V +  
Sbjct: 351 ------NDQPIDLFYIDENPAAIRMTGQSFRGR-RLRKISPNYEEY--WYEIFGRVAQMG 401

Query: 386 ETHK-DTWHLPNGQTLHVIVT---SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
           ++ + + +  P+       V     +       +F ++T +   E       K Q   ++
Sbjct: 402 QSKRLERYAEPDKIWYDFYVFKVGGDDTQRVAVVFNDITDRKRAEATLEANAKRQEFLLE 461

Query: 442 HLSEGVAVFGPD----------GRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                  +   +          G+   +N   +      +E  +    +   +     RY
Sbjct: 462 LSDTLRPLVDAEAISYQAACILGQHLKANRVGYAEADDNDETIVVTHNYTDGVLGIEGRY 521

Query: 491 YNESDGWDLFAAIIT-------------SFDDERKSLQGTLEL---------LSDSVLEY 528
           + +  G +L                   S  D+ K+    L+L          +  ++  
Sbjct: 522 HYDDYGSELLREFKAGRTVVRGDIANDPSLTDKEKAAHAVLQLGATVNVPLVKAGRLVAV 581

Query: 529 SIIPLPNAQTM------------LTFVNVTDSVRAERALT-----------------EKN 559
             +   +A                   +     RAE AL                  ++ 
Sbjct: 582 LFVHFQSAHEWLDSELVLITEVAERIWDAVKRARAEAALRESELQRVREQSAREQEQQRA 641

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTD--LLKTSKLGSLNSKQSQYVEYISASS 617
           E+L + +  K  F  +VS+E R+PLT ++   +  + +  K         + ++    ++
Sbjct: 642 ESLAEVNHAKTQFFSNVSHEFRTPLTLLLSPLEDAIAQLGKNKGKQDNVKKQLQLAYRNA 701

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL LVN +LD + ++A  ++ NY    L     ++     + +    ++  V      
Sbjct: 702 LRLLKLVNTLLDFSRIEAERIEENYQPTDLAAYTTDLASLFRSTIENAGLQFMVNCQPLS 761

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSI 730
                DR+   +I   +LSNA  F+ +G  + +    +  +        +  V++ G  I
Sbjct: 762 KLIWVDREMWEKIVLNLLSNAFKFTFEGE-IRVSLREEEDNSKTNNKFAVLEVQDTGIGI 820

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +F RF  +         G G+GLS+V   + LHGG V +SS     TT    +
Sbjct: 821 SSEELPHIFERFYQSKSHQGRSYEGSGIGLSLVAELVKLHGGTVEVSSQVGKGTTFTITL 880

Query: 789 PS 790
           P+
Sbjct: 881 PT 882



 Score =  197 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 110/244 (45%), Gaps = 7/244 (2%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             E  +  +   L   +E   +F   VS++L++PL  I  F + L+       ++   +Y+
Sbjct: 1083 LEAQVKIRTAQLEAINEELEAFSYSVSHDLQTPLRYISSFVERLQGKLDAHADASSLRYL 1142

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
              I+ +++    ++ D+L+ +       +L  + + +  L+ EV+  +  ++ +  I   
Sbjct: 1143 SIINEATSQAHRMIEDLLEFSR--GSNTQLRLTQVSMEQLVQEVRSQLKPEISDRLIEWH 1200

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGS 728
            +     L     D Q L  ++  ++SNA+ ++   ST  + + +  D+ + +F V++NG+
Sbjct: 1201 IE---PLPEVQGDPQMLRLVWQNLMSNAVKYTCNCSTAIITISSRIDDNEIVFFVEDNGA 1257

Query: 729  SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                     +F+ F     + Q  G G+GL+ V   I+ HGG V   S+          +
Sbjct: 1258 GFDMKYQNRLFSLFQRLHSQEQFAGTGVGLANVRRIIHRHGGRVWAESTVNQGARFYFSL 1317

Query: 789  PSKE 792
            P +E
Sbjct: 1318 PKQE 1321


>gi|150017638|ref|YP_001309892.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904103|gb|ABR34936.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 523

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 171/410 (41%), Gaps = 42/410 (10%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--PDGRIKLSNPAFRSLWK 468
           GT     +++  + +E +YN L+K    T +   +   VF   P+ +    NP+ +    
Sbjct: 96  GTYLSLIDISKYIHIEERYNQLIK----TCEKTKDVFFVFEILPEFKFIYVNPSMQETLG 151

Query: 469 TE-ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--V 525
            E E        +  I           +  ++  + +    D  K      +        
Sbjct: 152 YELEMYYIDPHFVFEIV--------HPEDTNIMQSRVDKNTDFSKDFCLRFKHKDGHYVW 203

Query: 526 LEYSIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEALR--------------KAD 566
           +E  ++P  N    L        ++T+  + E+ L E+N+ L               K  
Sbjct: 204 IEDYLVPTYNENGDLVSVSGFSRDITERKKLEKMLEEQNKLLEMDVTAEIKTNKIMEKTL 263

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS--LNSKQS--QYVEYISASSTILLN 622
           + +   + ++S+EL++PL  I     LL+   +    +N K    +Y + I  ++  L  
Sbjct: 264 KSQEELLVNISHELKTPLNVISATAQLLEMYYMDDSIINKKDILIKYFKSIKLNTYRLSK 323

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+N+I+D + ++AG  +LN   + + +++ E+  S+ + +    + I   ++ +      
Sbjct: 324 LINNIVDTSKIEAGFFELNLLNVNIVNVVEEIVMSVTSFVKIKGLNIIFDTNTEEKIIAC 383

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D +++ +I   ++SNA  FS+    + +K    N     SVK+NG  I E     +F+RF
Sbjct: 384 DPEKIERIMLNLISNATKFSNDNGEIFVKVKDMNEWVEISVKDNGIGIEEKKMDIIFDRF 443

Query: 743 VSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                       G G+GLS+V+S   LHGG +++ S     +     +P+
Sbjct: 444 EQADKSLSRNAEGTGIGLSLVKSIALLHGGSINVESEYGKGSKFTVTLPA 493


>gi|282899742|ref|ZP_06307705.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195357|gb|EFA70291.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 407

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 2/249 (0%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R  + +  +N  L +   +K+ F+  +S+ELR+P+  IIGF  +L   K   L+S
Sbjct: 149 NDELERQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSS 208

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q+  ++ I  ++  L  L+N++LD + +D+G + L      L+ ++N     I + +  
Sbjct: 209 VQTDMLKRILNNAKDLSMLLNEVLDFSKIDSGRLGLKAEIFDLSKMVNHTVDEIRSLVEA 268

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + + V  D +      D  R+ QI   +LSNA+ F+ +G   +            S++
Sbjct: 269 KKLSLSVEIDLENTLVFNDPVRVRQILINLLSNAIKFTERGCVWVRVTETSKSRIAISIR 328

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I    C+ +F  F         +  G GLGL+I++S + + GG + + S     +
Sbjct: 329 DTGIGISNQDCEHIFEAFRQVDQGMSRKYPGTGLGLAIIDSLVKIMGGKIMLESQLAVGS 388

Query: 783 TINCRIPSK 791
                +P +
Sbjct: 389 LFTVELPRQ 397


>gi|239995946|ref|ZP_04716470.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 932

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 119/255 (46%), Gaps = 11/255 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              + +  +AL    + L+KA + K+ F+  +S+E+R+PL  IIG T L   S+  + + 
Sbjct: 395 WLRTRQQRKALDALTQDLQKATKAKSDFLARMSHEIRTPLNAIIGLTKL---SQRAAEDK 451

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q   +  I  +S  LL+++NDILD + ++AG + +  +   L+ L+N+  +    +  E
Sbjct: 452 DQQTNLIQIEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLGRAEE 511

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DF 719
            +I +       +  + + D  R+ QI S ++SNA+ F+  G  + +     +       
Sbjct: 512 KHIELIQHISRDVPLNLIGDPLRIQQILSNLVSNALKFTEDG-LISVSVRCTHNVEDIQL 570

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F VK+ G  +       +F  F         +  G GLGL+I +  + L GG + + S 
Sbjct: 571 EFEVKDTGIGLNSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMGGEIWVESQ 630

Query: 778 DEGVTTINCRIPSKE 792
                + +  +  K+
Sbjct: 631 LGKGASFHFTVTVKQ 645


>gi|149190795|ref|ZP_01869060.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1]
 gi|148835357|gb|EDL52329.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1]
          Length = 568

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 7/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    ++     F+  +++ELR+PL  ++G  +LL  +    L   Q +    +S
Sbjct: 186 LVKSKERAEASERSTREFLAMINHELRTPLNGLLGSVELLADT---DLKGAQQELHSNLS 242

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S  +L +++ND+LD + +DAG+++L  ST    +L + +      K  E  I   + +D
Sbjct: 243 QSGQLLRSIINDLLDFSKIDAGMLELIESTFKWTNLQSTLCSIFEHKAAEKQIGFTICAD 302

Query: 675 G-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           G    +F  D +R+ QIF  ++ NA+ F+ +GS V +      G   FSV + G  I + 
Sbjct: 303 GFSNKNFKGDLERITQIFVNLIGNAIKFTDEGS-VKVTLTSQEGGIGFSVTDTGIGISQT 361

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             K +F  F+       R   G GLGL+I +  + L GG +S++S     TT    +P +
Sbjct: 362 AQKKLFQPFIQADRSSSRNYEGTGLGLAICKRLVELMGGSISLTSELGQGTTFYGFLPLQ 421


>gi|71280971|ref|YP_268556.1| sensor protein TorS [Colwellia psychrerythraea 34H]
 gi|71146711|gb|AAZ27184.1| sensor protein TorS [Colwellia psychrerythraea 34H]
          Length = 1000

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 148/318 (46%), Gaps = 28/318 (8%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE----- 552
           DL   + +S D+E K L   L++  +  ++   +     QT        +++        
Sbjct: 380 DLEITVESSNDEELKHLAEALDVFREHAIKKQQLEYEQLQTEQELRLHKENLEQLINIRT 439

Query: 553 RALTEKNEALR--------------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + L   NE L               +A+  K+ F+  +S+E+R+P+  +IG  +LL  +K
Sbjct: 440 QELRFTNEKLNSESKAHALAKQQADEANRAKSVFLASMSHEIRTPMNGMIGTLELLTDTK 499

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S+Q +Y + I  S   LL+++NDILD + ++AG + L+Y  I L  L  +V   +
Sbjct: 500 ---LTSEQQKYAQTILYSGESLLDILNDILDYSKIEAGHIALSYRAIDLGKLGEDVVHLM 556

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-- 715
             +    ++++     G + ++ VAD  +L QI   +++NA+ F+ +GS V+     D  
Sbjct: 557 RARAQNKSLQLHFEKKGNIENWRVADLGKLRQILINLINNAIKFTQRGSIVLSIGVNDES 616

Query: 716 ---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              + +  FSV + G  I +D    VF  F    +     G GLGL+I +  ++   G +
Sbjct: 617 SSGDSEVTFSVTDTGCGIAKDKQADVFQAFTQVDNLQSAVGTGLGLAICQRLVSAMQGTL 676

Query: 773 SISSSDEGVTTINCRIPS 790
           S+ S +   +     IP 
Sbjct: 677 SLESEENRGSCFAFTIPL 694


>gi|289621642|emb|CBI52425.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 1298

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 158/380 (41%), Gaps = 24/380 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ ++++E K   L  +  ETI+++ + +++F  + +    +     +   + +     
Sbjct: 569 DMSRKIEVEAKGEIL--ILKETINNMVDRLSIFCNEVQRVAKDVGVDGIMGGQADVAGLK 626

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + I    +   N     +L A +    D    +  G    L    +E       +  
Sbjct: 627 GRWKEITTDVNTMAN-----NLTAQVRAFGDITNAATDGDFTKL----VEVEASGEMDEL 677

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  V +   + +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +
Sbjct: 678 KKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT 737

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q + +  +++ +  LL +++DILDL+ ++A  M +      L   +    ++
Sbjct: 738 ---DLTQYQREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKT 794

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------- 709
           +A K +E  + +    D  +    V D  RL QI   ++ NA+ F+  G   +       
Sbjct: 795 LAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFTEHGEVSLTIQKASS 854

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           ++   D     F V + G  IP D    +F+ F        R   G GLGLSI +  +NL
Sbjct: 855 VQCGNDEYAIEFVVSDTGIGIPSDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNL 914

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG V + S     +     
Sbjct: 915 MGGDVWVKSEYGKGSKFYFT 934


>gi|270000570|ref|NP_844382.2| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|269850218|gb|AAP25868.2| sensor histidine kinase [Bacillus anthracis str. Ames]
          Length = 465

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 227 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 285

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 286 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 345

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++
Sbjct: 346 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDD 403

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 404 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 461

Query: 787 RIPS 790
           ++P 
Sbjct: 462 KLPL 465


>gi|268324757|emb|CBH38345.1| conserved hypothetical protein, histidine kinase family and
           response regulator receiver family [uncultured archaeon]
          Length = 406

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 8/249 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             ++A+    + L +   +K+ F+   S+ELR+PLT +     ++    +G LN  Q + 
Sbjct: 149 ELQKAMEHMAD-LEEITRMKSEFLSITSHELRTPLTPMKAQLQMILEGYVGELNDNQKKS 207

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E +  + T L  L++DILDL+ ++AG +KL +  + +N ++ E   +  +     +I I
Sbjct: 208 LEVVLRNITKLGKLIDDILDLSRIEAGRIKLAFKPVNINSIVKEAIITQESSATSKDIEI 267

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKN 725
                  L   V D +R+ Q+   +L+NA+ FS K   VI++          + +FS+ +
Sbjct: 268 STKL-ADLPDIVGDPERIGQVIGNLLNNAIKFSKKSGKVIIETKCLDIEGKENVLFSITD 326

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +   K +F  F         ++ G GLGL+IV   I+ H G V I S     TT
Sbjct: 327 YGIGISKADHKKLFKPFSQIDTSLGREQAGTGLGLAIVRGIIHAHRGKVWIDSESGNGTT 386

Query: 784 INCRIPSKE 792
               IP+ +
Sbjct: 387 FYFTIPTGQ 395


>gi|261250289|ref|ZP_05942865.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
 gi|260939405|gb|EEX95391.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
          Length = 1128

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 12/287 (4%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T   DE   L  + E +  S+ E         + +L      +     + + ++N+ L+ 
Sbjct: 405 TQRKDEIGRLAVSFERMQRSIRE---------KILLIKQQNEELESNLKLIQKQNDELQL 455

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+++K+ F+   S+ELR+PL  ++G  + L +   G + S+    ++ I +S   L  LV
Sbjct: 456 ANKLKDEFLATTSHELRTPLHGMVGIAEALASGANGPITSEHKYQLDIIISSGQRLATLV 515

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +D+LD   +  G + +  S + L      V +  +  +    IRI      +     AD 
Sbjct: 516 DDLLDYHKMRYGNLDIETSAVDLAGSTRLVLELSSHLLGTKPIRIINQVPNEPVWVSADP 575

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           QRL Q+   ++ NA+ ++S+G  +++ A   + +    V + G  IP D  + +F   + 
Sbjct: 576 QRLEQVLYNLVGNAIKYTSEG-KIVISANVVDDNIRVQVVDTGQGIPADQLEHIFEPLIQ 634

Query: 745 N--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   R+G GLGLSI    I L  G + +SS     TT +  +P
Sbjct: 635 AGSDSSRYRQGAGLGLSISRQLIELMNGSLYVSSQPMVGTTFSFTLP 681


>gi|298528571|ref|ZP_07015975.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512223|gb|EFI36125.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 533

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 143/307 (46%), Gaps = 12/307 (3%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--QTMLTFVNVTDSVRA 551
             G DL   +++    E  +++     ++D +++  +  L  A  + +    N      A
Sbjct: 73  ESGLDLPFILVSGSIGEETAVEAMKAGVNDYIMKDKLARLAPAVRRELKEAENRRAKKEA 132

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
             AL    EA   A   K+ F+ ++S+E+R+PL  I+G   LL ++    L+++Q +Y+ 
Sbjct: 133 HEALVAAKEAAEVASRAKSEFLANMSHEIRTPLNGIVGMLQLLSST---GLDTEQEEYIR 189

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              +++  L  L++DILDL++++AG M +  +   ++ +   +         E  I   +
Sbjct: 190 LGQSAAQRLTRLLSDILDLSSIEAGRMYIRENPFSISHVCESIHDLFIITAREKGIHFDI 249

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNN 726
             D ++    + D  R+ QI   ++ NA  F+ +GS  + ++ A    D      SV + 
Sbjct: 250 SLDPQIPKKVMGDATRVSQILFNLVGNAFKFTDQGSISLDIRLAEQEQDRLLLHISVADT 309

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G+ IP D    +F  F         + +G GLGL +V+  ++L  G + + S     TT+
Sbjct: 310 GTGIPPDKINELFQPFTQADGSYTRKYQGAGLGLVVVQRLLDLLEGRIEVDSIVGQGTTM 369

Query: 785 NCRIPSK 791
           +  +P K
Sbjct: 370 HVSMPLK 376


>gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 915

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 190/487 (39%), Gaps = 45/487 (9%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           +L + + I D+N        S + L       +   P   +   +        E +  K+
Sbjct: 206 SLPMGVTIIDENG------HSLISLTG-PDGIIKAEPRWMQERSWFGYTPGFRELVLKKS 258

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV------DLET 427
              +  S+  S               L+ I+ +   G  ++    +  +           
Sbjct: 259 LPPSSLSIVYSV-PVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ 317

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L  T  N L+     R     
Sbjct: 318 RLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQII 373

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS +    +LQ +           +I  L +  T        
Sbjct: 374 CGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST-------- 415

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 416 -RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGV 471

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +    
Sbjct: 472 DRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 531

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V++
Sbjct: 532 LGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRD 590

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     + 
Sbjct: 591 TGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQ 650

Query: 784 INCRIPS 790
              RIP 
Sbjct: 651 FTLRIPL 657


>gi|73662383|ref|YP_301164.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494898|dbj|BAE18219.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 562

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 165/376 (43%), Gaps = 34/376 (9%)

Query: 424 DLETKYNTLVKVQG-------ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           +L  +   L   Q         T++++   + +    G I ++N +F +++ T E  +  
Sbjct: 208 ELARRLQRLNHKQKLQSNRLKTTVENIPSSILMIDKYGEIVVANKSFYNVF-TPEKAVEH 266

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            +++  +  T  +   E+        +     D+   ++ T++ +     + S +P+ + 
Sbjct: 267 KSYVDFVDLTLQKLITEAF------KVEKPIYDQ---IELTIDQVHQKYFDTSCVPILSK 317

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                +  V         +      L+K + ++  FV +VS+EL++P+T+I GF + L  
Sbjct: 318 TKKNLYGMVI--------VLHDITNLKKLENLRREFVANVSHELKTPITSIKGFAETLLD 369

Query: 597 SKLGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              G+ N +Q  +++++ IS  S  +  LV D+LDL+ V+    ++    + L+++    
Sbjct: 370 ---GAKNDEQTLNEFLKIISKESDRIETLVFDLLDLSHVEQ-QTEIVTEYVSLSEIAEST 425

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +++     E  I I       +    A++ ++ Q+   +LSNA+ +S   S VI++  +
Sbjct: 426 IKNMQNIAEEKQITIVNEIKPDI-VIDANKDKVSQVALNLLSNAVSYSKASSEVIVRVYK 484

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
           D    I  V++ G  I  +  + +F RF            G GLGLSI +  +  H G +
Sbjct: 485 DANKRIMEVQDFGIGISAEDQQHIFERFYRVDKARSRDSGGTGLGLSITKHIMEAHNGRI 544

Query: 773 SISSSDEGVTTINCRI 788
           ++ S     +T     
Sbjct: 545 NVFSRPNEGSTFRVTF 560


>gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 1166

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A+ + +  +E +  Q  L+  +  + E +   L  AQ         +  +A + L ++ 
Sbjct: 531 LASELQARSEELQVQQEELQRSNAELEEKAA--LLAAQNRDIEGKNLEIEQARQELEDRA 588

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y   I ++ + 
Sbjct: 589 HQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTAKQVEYAGIIHSAGSD 648

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLG 678
           LL L+NDILDL+ V+AG M +N   + L  LL+ V  +      + ++   +  + G   
Sbjct: 649 LLQLINDILDLSKVEAGKMDINPERVALAQLLDYVDATFRPLTTQKSLDFTIHTAPGVPV 708

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VIL----------KAARDNGDFIFSVKNNG 727
             + D  RL Q+   ++SNA+ F+ +GS  V +             R      F V++ G
Sbjct: 709 DLLTDDSRLRQVLRNLISNAVKFTERGSVRVRIEPATDGELPASVHRGGAVVAFRVEDTG 768

Query: 728 SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPE   +++F  F         +  G GLGLSI     +L GG ++  S+    +T  
Sbjct: 769 IGIPEQQLEAIFGAFQQADGTTSRKYGGTGLGLSISREIAHLLGGALTARSTPGRGSTFT 828

Query: 786 CRIP 789
             +P
Sbjct: 829 LYLP 832


>gi|114769184|ref|ZP_01446810.1| sensory box histidine kinase/response regulator [alpha
           proteobacterium HTCC2255]
 gi|114550101|gb|EAU52982.1| sensory box histidine kinase/response regulator [alpha
           proteobacterium HTCC2255]
          Length = 843

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 162/384 (42%), Gaps = 21/384 (5%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR--------SLWKTEENRL 474
           +    +     +    T+    + + +     +I   N +           +       +
Sbjct: 205 IRRADELTASSRQLALTVAGSMDAIIIADGYSKIIEYNTSAEGVFGWSRKEIIGRTMEEI 264

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                +R+         +E    +    +       RK+ +     L+ + +E +     
Sbjct: 265 LFPKGLRDAYKNAMAQSSEVTNTNAVDGVRVELTAWRKNGEEFEVELNMTYVERN----D 320

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A  M    +++D   AE+ L E  +   + D+ K+ F+  +S+E+R+PL  IIG  DLL
Sbjct: 321 DAIYMAYIRDISDRKVAEKILIEARDRAERTDKAKSQFLAVMSHEMRTPLAGIIGVMDLL 380

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K +   +L+ KQ  YV+  ++S  ++L  +N+ LD+  ++ G  +L+     L DL   +
Sbjct: 381 KAT---NLSKKQDHYVQIATSSGEVMLEHINEALDITRIEGGAFELSPQEFNLPDLARSL 437

Query: 655 KQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS---TVIL 710
            + +    +E  + +++  D  +   F+ D  R+ QI + +L N++ F+ +GS    +  
Sbjct: 438 VEVLKPLANEKELSLELQIDDNIKAYFLGDSHRIRQILTNLLGNSIKFTDEGSIQFVISC 497

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLH 768
               D     F++ + G  I  +  + +F  FV  S+    Q RG GLGLSI        
Sbjct: 498 SHEADVSRLKFTITDTGLGIAPENHEKIFEDFVAISSGDERQSRGDGLGLSISRKIARQM 557

Query: 769 GGHVSISSSDEGVTTINCRIPSKE 792
           GG + + S+     T    +P K+
Sbjct: 558 GGDIIVESNINEGATFILNLPLKQ 581


>gi|239905634|ref|YP_002952373.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795498|dbj|BAH74487.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 768

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 154/375 (41%), Gaps = 17/375 (4%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +  E              +    G  +   +G     N AF  ++ +             
Sbjct: 257 LKSEATSRENEARFRSLYESSPLGTLLLDKNGTATDCNLAFSKIFDSPRETYRGINLYEA 316

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +              D    +I + +   +    +     +  +    +   +   M+  
Sbjct: 317 VKDKL--------FLDAVEELINTGETHAEGSYESFFSHKNIFIRVHGVKAHDNLFMVIV 368

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T    +E  L    E    A + K+ F+ ++S+E+R+PL  I+G   LL+++     
Sbjct: 369 EDITAEKISELELIAAKEQALAASKSKSEFLANMSHEIRTPLNGIMGMLQLLEST---DT 425

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +S+Q++Y++    S   L +L+ DILDL+ ++ G + L      LN L+ +V  +  T++
Sbjct: 426 DSEQTEYIDIALNSGRNLTSLITDILDLSRIEQGYVALENHGFNLNHLVEDVINTFITEL 485

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGD 718
              N+ IK   D  +      D  RL QI   I  N++ F+S+G    T+      +  +
Sbjct: 486 TSKNLEIKTSIDKSIPDLVYGDSGRLRQIIFNIFGNSVKFTSRGCISLTITSLINNNIIN 545

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
               + + G  IPED    +F  F         +  GVGLGLSIV+  + + GG ++I +
Sbjct: 546 IFIEISDTGIGIPEDKLDEIFVPFTQVDGSLTRKYGGVGLGLSIVKKLLLIMGGSITIDN 605

Query: 777 SDEGVTTINCRIPSK 791
           +D+G  T    IP K
Sbjct: 606 NDDGGITTCIAIPFK 620


>gi|221236136|ref|YP_002518573.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|220965309|gb|ACL96665.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 574

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 6/226 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K++F+  +S+ELR+P+  ++G    L+ +K   L+++QS+Y+E I  S   L+ ++N
Sbjct: 197 SRAKSAFLAMMSHELRTPMNGVLGLAHALRGTK---LDAQQSEYLEMIEQSGHGLMTILN 253

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684
           DILDL+ ++AG + L  +   L  L  + +   +       + + + +S         D 
Sbjct: 254 DILDLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESARLKGLDLILEVSPSAPPWVSGDA 313

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            R+ QI   ++SNA+ F+  G  VI       G    SV + G  +  +    +F  F  
Sbjct: 314 TRVRQILMNLVSNALKFTESGRVVIRLGGEAGGVVTLSVTDTGVGMTAEQIGRLFTPFAQ 373

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 RR  G GLGLSI      L  G + +SS     +T   R+
Sbjct: 374 GDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPGVGSTFTVRL 419


>gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 948

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQI 405

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 406 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 448

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 449 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 503

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 504 VDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRK 563

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V+
Sbjct: 564 QLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVR 622

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 683 QFTLRIPL 690


>gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 948

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQI 405

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 406 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 448

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 449 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 503

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 504 VDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRK 563

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V+
Sbjct: 564 QLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVR 622

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 683 QFTLRIPL 690


>gi|17232702|ref|NP_489250.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134349|dbj|BAB76909.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1558

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 112/256 (43%), Gaps = 5/256 (1%)

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                      +   A           + IK+ F+  +S+ELR+PL  I+G+  LL+T   
Sbjct: 1157 QQCAQAIARSQLYEAEKNARAIAESTNRIKDEFLAVLSHELRTPLNPIMGWAKLLRTRTY 1216

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 KQ   +E I  ++ +   L++D+LD++ +  G + LN   + L + +    +++ 
Sbjct: 1217 KEETIKQG--LETIERNAKLQTQLIDDLLDVSRILRGKLNLNVCLVDLRNTVQAGLETVR 1274

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                  +I I  I   +    + D  RL Q+   ++SNA+ F+     V ++  +   D 
Sbjct: 1275 LAAEAKSIEIHTILSDEPVQVMGDGDRLQQVIWNLVSNAVKFTPSEGRVDVRLEQVGRDA 1334

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
               V + G  I  +    VF  F     +  R   G+GLGL+IV   + LHGG V   S+
Sbjct: 1335 QIQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGGLGLGLAIVHHLVELHGGTVVAESA 1394

Query: 778  -DEGVTTINCRIPSKE 792
             ++   T   ++P  +
Sbjct: 1395 GEDQGATFTVKLPLHK 1410



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 95/287 (33%), Gaps = 53/287 (18%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLF 244
           +KL      F++   + D +V+ +D+     W   +Y+          ++ IG+S  +LF
Sbjct: 120 QKLRQSEERFRLALSNSDIVVFQQDRDLRYRWI-HNYR-----GVASAEEIIGKSDNELF 173

Query: 245 KEEIKKRMIS----SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-----GEAGIAIDV 295
              + +++ +        + +  E VS + HG    Y ++    +      G    A+D+
Sbjct: 174 PTSVAEKLTAIKQKVLEKDISVHEEVSVIFHGEVVYYDLLAEPLTINGQIQGITCAAVDI 233

Query: 296 SKEITVNDQLTHTYEILH------------------NLTVAIAIFDQNRYLQFHNRSFVE 337
           ++      +       L                   +  VA+A  D      + N +   
Sbjct: 234 TERKRSELEKAKLQRKLQKAIQQQDEYLALLNAWLASSPVALAFLDTKLRYVYTNEALAA 293

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQL---NWKTWKENIFSVYKSSETHK----- 389
           +  I  +        + L E+      + +Q+         + +  V   S  H+     
Sbjct: 294 INGIPQSQHIGRTLREVLPEWATQLEPILQQVMATKEPLINQEVCGVTYPSGVHRCSLVN 353

Query: 390 -DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                LP+G+ L V VT            ++T +   E     + + 
Sbjct: 354 YYPVCLPDGKLLGVGVTGL----------DITERKQAEDALRYIAQT 390



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 9/250 (3%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            VA+   D+       N+   ++  + +         D L +         +Q+      
Sbjct: 579 PVAVCFLDKELRYIRINQVLADVNGLSIEEHLGRKFRDVLPKMAEQFEAQLQQVLETGQP 638

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                V   +    +      G    V  +     G   +   +T    +E       + 
Sbjct: 639 LLNLEVSGEALGRPEINSYWLGNYYPVYDSMGKTVGIGIILAEVTATKQVEIALRESEER 698

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                D  + G+ +   DG+   +N A   +       LS      +I        +   
Sbjct: 699 FRAMFDQAAVGITLVTLDGQFLQNNQALCDITGYSSEELSQMK-FSDITHPDDVEADWVY 757

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVR 550
              + A  I  +  E++ L+   +  +   +  +   + N Q      +    ++ +  +
Sbjct: 758 AKQVLAREINGYSLEKRYLR---KDGTTVWVNLTASAVWNEQGEPKYALGIIEDINERKQ 814

Query: 551 AERALTEKNE 560
           AE A     E
Sbjct: 815 AEAAQNFLVE 824


>gi|332306526|ref|YP_004434377.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173855|gb|AEE23109.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1040

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 163/396 (41%), Gaps = 26/396 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +  F N + +     +           +    + +      G +   N A  SL +   
Sbjct: 349 IVLSFFNRSARKS--QQLADERAQSAAIVSASQDAIISVSVTGEVMSWNYAAESLLELSA 406

Query: 472 NRLSPGTHIR-------NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
                 + I         +     +  N++   +    I T+ +  ++ L  +   +S+ 
Sbjct: 407 QSAIGNSLIELSVFDDVELGDIFEKLSNKNTQLNAETQIDTN-EGSQRYLALSFSSISND 465

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE----KNEALRKADEIKNSFVQHVSYEL 580
             E   I +         +      +A   L E    +   L+KA  +K++F+ ++S+E+
Sbjct: 466 DGEVKGIAIIARNVTNERIADEKIKQANAELEEKVAVRTVELQKASRVKSAFISNISHEM 525

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIG  +L+K      L   Q +Y+E    S   L  LVND+LDL+ ++AG + L
Sbjct: 526 RTPLNGIIGTLNLVKR---DPLTDNQQRYIEMTEVSVNTLSTLVNDVLDLSKIEAGKLDL 582

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAM 699
           ++ +    +L+  +  S+A K  E  +   +        S V+D  R  QI + +++NA+
Sbjct: 583 DFKSFNPINLIESLCGSMAVKAQEKGLEFVIDVSRLDCVSMVSDPHRFSQIMTNLVNNAI 642

Query: 700 DFSSKGSTVILKAA---RDNGDFIF--SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRR 752
            F+ KG  + + A     D+G  +   +++++G+ I ++    +F+ F         +  
Sbjct: 643 KFTEKG-YIKVSAYTQQTDSGSVVLHCAIEDSGTGIAKENQHKLFSAFSQEDSSIASKHG 701

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGLSI    + L  G V   S     +T    I
Sbjct: 702 GTGLGLSICRQLVTLLNGDVRFESEKNKGSTFYFSI 737


>gi|262192564|ref|ZP_06050714.1| sensor histidine kinase [Vibrio cholerae CT 5369-93]
 gi|262031609|gb|EEY50197.1| sensor histidine kinase [Vibrio cholerae CT 5369-93]
          Length = 1147

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|229520978|ref|ZP_04410399.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
 gi|229341863|gb|EEO06864.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 1147

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|188590708|ref|YP_001921035.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500989|gb|ACD54125.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 664

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 135/277 (48%), Gaps = 8/277 (2%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            ++E++   +   +T +       +        ++ E     + +K  F  ++S+E ++P
Sbjct: 357 RIIEWNWSYINGGKTFIMTGKDITNYNELALENKRLENAIALESLKTQFFANLSHEFKTP 416

Query: 584 LTNIIGFTDLLKT--SKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L  I+    L+++   K   +  KQS  +YV  +  +S  LL LVN+++D+  +D G  K
Sbjct: 417 LNIILTTAQLMESYIKKFDDMLEKQSMGKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYK 476

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +N     + +++ E+  S+A         I   +D +      D +++ +I   ++SNA+
Sbjct: 477 VNMVNKNIVNVIEEIVLSVAEYTKNKERNIIFDTDEEEIILACDPEKIERIILNLVSNAL 536

Query: 700 DFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
            ++ K   + +  + +  + + I SVK+NG  IP++  + +F RF    +       G G
Sbjct: 537 KYTEKDGIIKVNISTNLHDNEVIISVKDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSG 596

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +GLS+V+S + +H G + I+S  +  T I   +P K+
Sbjct: 597 IGLSLVKSIVEMHEGKIWINSESDEGTEIIFTLPIKK 633


>gi|163802031|ref|ZP_02195927.1| sensor histidine kinase [Vibrio sp. AND4]
 gi|159174172|gb|EDP58980.1| sensor histidine kinase [Vibrio sp. AND4]
          Length = 806

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 161/389 (41%), Gaps = 27/389 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL-SNP-----------AFRSLW 467
           TV V LE     L++   E  +H S GV +   DG++ +  N             F +  
Sbjct: 194 TVDVSLE----ALLQFIREHTNHYSLGVVIRDADGQVVVEHNFNLTKDIYISQLEFGAFH 249

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS--DSV 525
              +   +       +             + L   ++  +   R  ++  + +    D  
Sbjct: 250 WKMDVVNAKVQVSEQVFEQVMSVERGIIPFLLVCVLVGYYLLNRYIVEPIVRIAQKIDDS 309

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
              SII +           +T        L ++      +   K +F+  +S+E+R+P+ 
Sbjct: 310 KAGSIIDIGYDSADEIGHLITKFNEKTVYLEQERAKALASTNAKTAFLATLSHEIRTPMN 369

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            ++G   +L  ++   LN +Q +Y+  +  S   ++ L+N+ILD + ++ G ++++ +  
Sbjct: 370 GVLGTAQILLKTR---LNEEQRKYLNTLYDSGDHMMTLLNEILDYSKIEQGHIEIDNTPF 426

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704
            ++ +L  +     +   E  +  +VIS+   G +   D+ RL Q+   +++NA+ F+ +
Sbjct: 427 PIDSILGSINSIYDSLCAEKGLEFRVISNVPEGRWYNNDKARLRQVLFNLINNAVKFTDQ 486

Query: 705 GST-VILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           G   V L    + D      SVK+ G  I  D  K +F  F        RR  G GLGL+
Sbjct: 487 GYVEVELTEQVSGDQTHLYISVKDTGIGIRPDAQKRIFRPFEQAESSTTRRYGGTGLGLA 546

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           IV+   +  GG V++ S +   T     +
Sbjct: 547 IVKQISDHMGGSVTVQSQEYIGTNFVVEL 575


>gi|150395255|ref|YP_001325722.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150026770|gb|ABR58887.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 739

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 148/373 (39%), Gaps = 24/373 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +++                  D + + V V  PDG++  +N AF  L    + R      
Sbjct: 97  SLRAGARETAQDAAAPLASIHDAMGDLVIVRDPDGKVMQANVAFHELCGCADARGLTC-- 154

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQT 538
               A    R+  + D +  F  I TS           L       ++ +SI        
Sbjct: 155 ----AELGLRFEPKPDPYRYFVHICTSAGTRLYDWHDVLVRDAHGRLMRHSIARDVTEDM 210

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +          RAE A              K+  +  VS+E+R+PL+ I+G + LL  ++
Sbjct: 211 LAASQREEARQRAEEA-----------SRAKSRLLATVSHEIRTPLSGILGMSRLLAETR 259

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q  Y+  +  S   L+ LV D++D +++ AG  +L  S   L   +  V + +
Sbjct: 260 ---LSDEQKNYLVGMQQSGHTLVQLVEDLIDFSSLAAGRFQLRPSQQDLRQTVENVVEML 316

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           + + HE  I I      ++    + D  RL Q+   ++ NA+ F+ KG  + +    +NG
Sbjct: 317 SPRAHEKGIEIGATVAIEIPERMLFDAARLRQVLFNVVGNAVKFTEKGGVI-VSVDIENG 375

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISS 776
                V ++G  +  D    VF  F       QR +G GLGL+I    +   GG ++ +S
Sbjct: 376 SLRIRVDDSGPGMSADALARVFEEFEQAGDEAQRAKGTGLGLAISRRIMEAFGGSLTATS 435

Query: 777 SDEGVTTINCRIP 789
                +    R P
Sbjct: 436 VSGKGSRFEIRFP 448


>gi|282897975|ref|ZP_06305970.1| Histidine Kinase [Raphidiopsis brookii D9]
 gi|281197119|gb|EFA72020.1| Histidine Kinase [Raphidiopsis brookii D9]
          Length = 1056

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 10/262 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++   +VT+  +  + L  KN  L + + +K+ F+  +S+EL++PLT ++G + LL   
Sbjct: 330 WLVLATDVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDK 389

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            LG LN +Q++Y   I  S   L+++VNDILDL  ++ G M+L  S + + ++ +     
Sbjct: 390 NLGELNERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALTE 449

Query: 658 IATKMHENN--------IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                 +              +  +  L   VAD  RL Q+   +L NA  F+     V 
Sbjct: 450 ARAVHTQTGRKGESLPSHEFSLTIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVG 509

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           L+  R  G   F+V + G  IP+     +F +F    +    Q  G GLGL +  +   L
Sbjct: 510 LRVNRWEGWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARL 569

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG VS  S +   +     +P
Sbjct: 570 HGGDVSFLSREGKGSQFTLLLP 591


>gi|242783978|ref|XP_002480294.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218720441|gb|EED19860.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 2394

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A   K+ F+ +VS++LR+P+  +IG ++LLK +K   L+ +Q  YV
Sbjct: 1872 AEAEANHNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLSELLKGTK---LDKEQDNYV 1928

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK++   + L + + EV +++     +  +   
Sbjct: 1929 ESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLSLKETIREVVRALRYTHRDRGLETI 1988

Query: 671  VISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIF--SVK 724
               D   +    + D  RL QIF  +LSN+  F+ KG   +  +      G      SV 
Sbjct: 1989 EDLDKVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPKGYVKVSAMVVREGKGRVRLECSVA 2048

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGV 781
            + G  IPE+    +F  F    +       G GLGLSI ++ I  + GG + + S+    
Sbjct: 2049 DTGIGIPEEHKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWLDSTPGVG 2108

Query: 782  TTINCRI 788
            TT+  ++
Sbjct: 2109 TTVTFQL 2115


>gi|254457972|ref|ZP_05071399.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207085365|gb|EDZ62650.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 1040

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 120/252 (47%), Gaps = 14/252 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     + L E  +    A++ K+ F+ ++S+E+R+P+  I+GF +LL        + K 
Sbjct: 543 ELFEVNKKLEEAKDIAVNANKAKSDFLSNMSHEIRTPMNAILGFAELLDKRV---EDKKS 599

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +++ I +S   LL L+NDIL+L+ +++G ++L  S + + ++  E       +  +  
Sbjct: 600 KSFIKTIRSSGQTLLYLINDILNLSKIESGKLELVKSRVNIQNICEETINIFKLQAKQKG 659

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-------GD 718
           +++++  + ++  + + D  RL +I   ++ NA+ F+ +G  V L    D         D
Sbjct: 660 LQLQLDINKEMPKAILIDSIRLSEILINLIGNAIKFTEEG-YVKLVVNVDEVYEHTSKVD 718

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISS 776
               V+++G  I +     +FN F    ++   +  G GLGL+I      L GG + + S
Sbjct: 719 LTIRVEDSGIGIEKINQDKIFNIFEQTENQDVKKYGGTGLGLAISRKLSKLMGGSLEVES 778

Query: 777 SDEGVTTINCRI 788
                ++     
Sbjct: 779 VLGKGSSFIIEF 790


>gi|294141952|ref|YP_003557930.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
 gi|293328421|dbj|BAJ03152.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
          Length = 931

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   LLKT     L+S Q  YV  
Sbjct: 281 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHSSQQDYVNT 336

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+T LL ++NDILD + ++AG M L      L + L++    ++    E +I + V 
Sbjct: 337 IEKSATNLLGIINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSAREKDIELVVD 396

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNN 726
            D  +      D  R  QI + ++ NA+ F+  GS V L+        D  +    V + 
Sbjct: 397 IDQSIPEDLSGDAMRFSQIITNLVGNAIKFTDIGS-VHLRLQLTESTNDKVNLRCEVIDT 455

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E   + +F  F        RR  G GLGL I +  IN  GG +   S     ++ 
Sbjct: 456 GIGIDESQQELLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCHSKPNTGSSF 515

Query: 785 NCRIPS 790
              +P 
Sbjct: 516 WFTLPL 521


>gi|221196442|ref|ZP_03569489.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221203114|ref|ZP_03576133.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221177048|gb|EEE09476.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221182996|gb|EEE15396.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 653

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 146/366 (39%), Gaps = 13/366 (3%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D   + +       RI   N A + ++  +   +         A    R     
Sbjct: 136 LLRRVVDASPDAIVGVDGARRIVSWNRAAQRIFGADAATMIGRDVTTLFAPRWLRRQPVP 195

Query: 495 DGWDLFAAIITSFDD--ERKSLQGTLELLSDSVL-----EYSIIPLPNAQTMLTFVNVTD 547
              D   A +   D    R+         + S +         + +   +      +   
Sbjct: 196 ASIDEVHAPVGPIDVLCMRQDAHCFRATFAASPIVDANGHVDGLSMTLREARERRRDERR 255

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              + R   +       A+ +K+  +  VS+ELR+PL  I G+ ++L++           
Sbjct: 256 DRLSLRGARDARVQADTANRLKDELLATVSHELRTPLNVIYGWVEVLRSVDGQGF---AQ 312

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q V+ I  S+  L  +V D+LD +++  G ++L  + + +  ++++  +      H   I
Sbjct: 313 QAVDAIDRSARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGI 372

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +     G      AD +RL Q+ S +LSNA+ F+  G  +++  AR +     SV + G
Sbjct: 373 TLVTEGAGTACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVSLSVADTG 432

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
             +  +    +F+ F    NA    +RG+GLGLSIV +   LHGG V  +S       T+
Sbjct: 433 QGMAPEALPHLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTV 492

Query: 785 NCRIPS 790
              +P+
Sbjct: 493 TVTLPA 498


>gi|146282344|ref|YP_001172497.1| two-component sensor [Pseudomonas stutzeri A1501]
 gi|145570549|gb|ABP79655.1| probable two-component sensor [Pseudomonas stutzeri A1501]
          Length = 879

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 117/676 (17%), Positives = 224/676 (33%), Gaps = 77/676 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            ++  +       +    +            +S+       D+   I+  N  +K     
Sbjct: 83  QAMAELKGSNQLLSDARLRAETAHQHLVDAIESISDAFVLFDRDQRIVLFNRRFKSLWTR 142

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFG 287
                        ++ +      +I      K    TV  L +G  +  ++  R     G
Sbjct: 143 TRARINAG-TRLAEVRRMAESTGLIVEEHRGKGDEPTVYRLNNG--RWVQVSERPTREGG 199

Query: 288 EAGIAIDVSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
              +  D+++         E  +  +       + NL+  +A+      L+  NR F+EL
Sbjct: 200 LVILYTDITEVKVSETMRREQALAQKSRLLQRAVDNLSQGVAMVSAEGALELWNRRFLEL 259

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             +  A +  +   +E++         P   + +                     L +G+
Sbjct: 260 CGL--APIEAHRPFEEVMADSELTLLTPNSRDARGRPIRELEQ-----------RLFDGR 306

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            L +     P GG +  F ++T +           +      DH+   +A    D   + 
Sbjct: 307 VLEIRTHPLPTGGFVNTFTDITERYRHAEALRESERWIRLITDHVPALIAYVSADLTYEF 366

Query: 459 SNPAFRSLWKTEENRL--------SPGTHIRNIAATCSR--------------------- 489
           +N  +   ++   + +          G H R +     R                     
Sbjct: 367 TNKVYEEWYRWPSDGMLGQSLREVHSGEHWRQLEPYIDRALSGESVSFEMAERNHAGQQR 426

Query: 490 -----YYNESDGWDLFAAI---ITSFDDERKS---LQGTLELLSDSVLEYSIIPLPNAQT 538
                Y          A I   I    D R++   L    + L   V E +         
Sbjct: 427 YMLRSYVPNRQANGEVAGIFVLIQDITDRRRTAEALHQAYQNLEQRVRERTAELTSLNDQ 486

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L  ++  +   AE  L E       A+  K  F+  VS++L  PL     FT  L    
Sbjct: 487 LLREID--ERSHAEARLREAKREAELANLSKTKFLAAVSHDLLQPLNAARLFTSALLEQP 544

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S        +  IS S   + NL+  ++D++ +DAG++K + +   +++LL  +    
Sbjct: 545 GASSGG----LIRNISNSLEDVENLLGTLVDISKLDAGVIKPDIAPFAVSELLENLAMEF 600

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   +++  I    L    +D Q L +I   +L+NA+ ++ KG  V+L   R    
Sbjct: 601 RQIAGAEQLQLDFIPCSAL--VRSDIQLLARILRNLLTNAIRYTPKG-RVLLGCRRRRQS 657

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISS 776
               V + G  IP D  + +F  F         Q RG+GLGL+IV+    + G  + +SS
Sbjct: 658 LSIEVWDTGVGIPADKLEEIFQEFKRGEGVRPNQDRGLGLGLAIVDKIARMLGHRIRVSS 717

Query: 777 SDEGVTTINCRIPSKE 792
                +     +P  +
Sbjct: 718 HPGRGSCFAIDVPLAK 733


>gi|134109563|ref|XP_776896.1| hypothetical protein CNBC3870 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50259576|gb|EAL22249.1| hypothetical protein CNBC3870 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1390

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 14/242 (5%)

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            T+  +    A+  K+ F+ ++S+E+R+P+  IIG T L   S+   L  +Q + +  +S+
Sbjct: 824  TKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESE---LTRQQRENLMIVSS 880

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             +  LL +++DILD++ ++AG M +      L   +  V +++  K  +N + +    D 
Sbjct: 881  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 940

Query: 676  KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNG 727
             +    + D  RL Q+ + ++ NA+ F++KG  V L           D  +  F V + G
Sbjct: 941  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKG-QVALSCRVKRYVTVADAVELEFCVADTG 999

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              I +D    +F+ F        R   G GLGL+I +  +NL  G + + S     +   
Sbjct: 1000 IGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESEYGQGSRFY 1059

Query: 786  CR 787
              
Sbjct: 1060 FT 1061


>gi|237797951|ref|ZP_04586412.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020802|gb|EGI00859.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 595

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +     N
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQLQLGWDESRLG---------ESLGAALN 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    I+     ER      +++  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLILRGGTLERAPEDLAIDIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEAKARFEDQALERDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                L    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DIQEPLPRLHADQSQLERVLDNLLDNALRHTPPKGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|213405247|ref|XP_002173395.1| peroxide stress-activated histidine kinase mak2 [Schizosaccharomyces
            japonicus yFS275]
 gi|212001442|gb|EEB07102.1| peroxide stress-activated histidine kinase mak2 [Schizosaccharomyces
            japonicus yFS275]
          Length = 2303

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 151/382 (39%), Gaps = 26/382 (6%)

Query: 419  LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPG 477
            + +Q +   KY  L       +D +   V +     G I+  N   +          S  
Sbjct: 1613 IEIQKNSYKKYKQLAIQYKTILDAVPSIVWMMDDTTGDIEYMNINAQKFLGVSGGDHSSV 1672

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNA 536
            + ++ I           D  + + A++ S D  +++ ++      +     Y    LP  
Sbjct: 1673 SMLKFI---------HPDYQETWRALLQSQDKLQKQGIEVPFLKCTGGYYWYLCRGLPME 1723

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              +              A  E  +A  +A ++K +F+ ++S+ELR+P +   G   LL  
Sbjct: 1724 SVVQNQKKWIIVCFDITAEKEAQDAAFRAMKLKANFLANMSHELRTPFSGFYGMLSLLSE 1783

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST-IVLNDLLNEVK 655
            +K   L+ +Q   V     S   LL+++ND+L+ + +++G MK+       + + + +  
Sbjct: 1784 TK---LDEEQRDIVSTARQSCDSLLHIINDLLNFSELESGKMKIEPDKVFDVEESIADCI 1840

Query: 656  QSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA- 713
            + +       +++I       + S +  D  +L Q+ + +L NA  F+  G  ++L+ + 
Sbjct: 1841 ELVYPTTSRKHVQISYDIMPNVPSLLAGDCAKLRQVITNLLGNAAKFTMHGH-ILLRCSI 1899

Query: 714  --RDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
               D+          V++ G  + E+  K +F  F        R   G GLGLSI     
Sbjct: 1900 LPEDDTKYSCKLKVEVEDTGIGLTEEEMKLLFQPFTQVDGSTTRIYGGSGLGLSICRQIC 1959

Query: 766  NLHGGHVSISSSDEGVTTINCR 787
             +  G + + S+    +T    
Sbjct: 1960 KIMNGDIGVESAVNEGSTFWFY 1981


>gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 659

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 13/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +AL+   EA   A   K++F+ ++S+ELR+P+  IIG T +LK      L   Q   +  
Sbjct: 256 QALSVAKEAAEAASRAKSTFLSNMSHELRTPMNAIIGMTYMLKRQNADPL---QVDKLGK 312

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++  LL L+ND+LDL+ +DA  M L  +   + +L  +V   +  +     +R  + 
Sbjct: 313 IDNAANHLLQLLNDVLDLSKIDAERMTLEQTAFSIPELAADVASLLTPRAESARLRFILD 372

Query: 673 SDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNN 726
            D +L     + D  RL Q+   +  NA+ F+ +G   I+    ++ +       SV++ 
Sbjct: 373 VDSRLKGLRLLGDPLRLQQVLLNLAGNAIKFTERGEVRIVARVVEDDEKAVHIELSVRDT 432

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT-- 782
           G  I  +    +FN F        R   G GLGL I +  + L GG + + S+    +  
Sbjct: 433 GIGIAPEAIGRIFNPFEQADGSTTRKYGGTGLGLPICQRLVRLMGGEIQVVSTPGAGSEF 492

Query: 783 TINCRI 788
           T   R+
Sbjct: 493 TFTVRL 498


>gi|95930779|ref|ZP_01313511.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95133127|gb|EAT14794.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 385

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 161/368 (43%), Gaps = 22/368 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            K  + ++     +D     + +   P  ++  +N + R L   ++   S    +  + A
Sbjct: 35  RKKMSELERYMALLDQAKNAICLLEVPSLKVVNANKSARKLLVLDQYPDSSLLDMIEVPA 94

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
             +      D  +L       F  E        E  S ++ E ++  +   +T       
Sbjct: 95  ATA----IVDWLELAGEGNHYFQLESTLYSYAQESYSSAIYELTLTTVEFKKTRYLVCVA 150

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D    +           K D++K+  +  VS+E+ +PLT ++GF + +  +++ +   +
Sbjct: 151 QDISERK-----------KLDQMKDEMISAVSHEMSTPLTAMLGFCEFMLENEVPA--EQ 197

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q ++++ I   S  L  L++++L L  + AG+  +N++ + L+ L  E+ Q        +
Sbjct: 198 QQEFLQIIFKESQRLKGLIDNLLSLQRMRAGMGCVNFTWLNLSMLFAELCQLFGKYSATH 257

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
              IKV          AD+  L Q    ++SNA+ +S  G TV + A +D+G  I SVK+
Sbjct: 258 --TIKVDCPTDFPLVSADQLCLQQAMENLISNAIKYSPNGGTVTVTARQDDGQVIVSVKD 315

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I   + + +F+RF     +   +  G GLGL +V+  I+LH G V + S +   +T
Sbjct: 316 EGMGISPVVQEQIFDRFFRIDTKNGQKVGGTGLGLPLVKEIISLHHGEVWVESEEGQGST 375

Query: 784 INCRIPSK 791
               +P +
Sbjct: 376 FCFSLPLE 383


>gi|323492078|ref|ZP_08097240.1| sensor histidine kinase [Vibrio brasiliensis LMG 20546]
 gi|323313639|gb|EGA66741.1| sensor histidine kinase [Vibrio brasiliensis LMG 20546]
          Length = 1142

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 174/425 (40%), Gaps = 40/425 (9%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +  L+      +  G  I ++    +       G          F  E+ +   +  + 
Sbjct: 656  RYLELFTFPAGLIQVGRPIADVIRHNAEQGLCGPGDPEQHVRRRVFHLEQGTRHTSSRVR 715

Query: 522  SD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
             D  V+E    P+P    +++F ++T    AE+AL + NE+L +                
Sbjct: 716  PDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANESLEERVQERTKELEQLNKKL 775

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                       + K+ F+  VS++L  PL     F   L          + S+++E    
Sbjct: 776  VSATQRSEHESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVANEPETKQLSKHIESALG 835

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L+ D+LD++ +++G + +N     +ND+L+ +    +    +  I   +I   
Sbjct: 836  AAE---DLIGDLLDISRLESGKLDINVHGFAINDVLSNLNAEFSALAKQQGIEFSMIPSQ 892

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
             L    +D + L ++    L+NA  +S +G  V+L   R  G     V +NG  I ED  
Sbjct: 893  LL--VQSDPKLLRRVVQNFLTNAFRYSPRG-KVVLGVKRIGGKARIDVWDNGMGIDEDKQ 949

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI------- 788
            + +F  F   +     +G+GLGL+I +   ++ G  +++ S     +  +  +       
Sbjct: 950  QEIFEEFNRGSQVRSDQGLGLGLAISKGIAHVLGHQITMRSWPGQGSVFSITLDRSEEAL 1009

Query: 789  -PSKE 792
             P KE
Sbjct: 1010 APVKE 1014



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFTFPAGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++               +  +  +F   +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCGPGDPEQHVRRRVF-HLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKDANESLEE 759


>gi|89072878|ref|ZP_01159435.1| sensor protein LuxQ [Photobacterium sp. SKA34]
 gi|89051400|gb|EAR56855.1| sensor protein LuxQ [Photobacterium sp. SKA34]
          Length = 576

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 148/383 (38%), Gaps = 48/383 (12%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-----------------PDGRIKLSNPAFRSLWKTE 470
           K++   +   + +D L +G+ + G                   GR++   P         
Sbjct: 80  KHSATRESIQQLLDSLVDGIYISGCHISIYPADNINISGSYSSGRLQQWIPPADLDSTNS 139

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              +   T   NI        N      + A  I   DD   ++Q  + L  +      +
Sbjct: 140 LWDIGEHTLWINII-------NNRGKIGVLAVRIACKDDRLPAIQKHMALFCE------L 186

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                 + +     +    RAE +           ++    F+  +++ELR+PL  ++G 
Sbjct: 187 FRSAIGRQITFNQAIDAKKRAEDS-----------EQSTRDFLAMINHELRTPLNGLLGS 235

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +LL+ +    L++ Q + +  ++ S  +L  ++ND+LD + ++AG+++L       + L
Sbjct: 236 AELLQDT---PLDNDQQKLLTTLNHSGELLRAIINDLLDYSKINAGMLELIEKPFDCHLL 292

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI 709
             +++     + HE  +   +     L    + D  R+ QIF  ++SNA+ F+  G  V 
Sbjct: 293 AVKLEDIFTHRSHEKRLDFNIYYSHDLPKVFIGDEDRIKQIFVNLISNAIKFTPAG-FVH 351

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
            K    N    F+VK++G  I       +F  F       +    G GLGL I +     
Sbjct: 352 AKLWWHNKQLQFTVKDSGCGIDHSDQHKLFKPFSQVDITSKRSHEGTGLGLVICKQLCEQ 411

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
            GG + + SS       N  +P 
Sbjct: 412 MGGSIRVESSLGRGACFNVSLPL 434


>gi|86138161|ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
 gi|85825188|gb|EAQ45388.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
          Length = 763

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 123/250 (49%), Gaps = 9/250 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E AL    E    A++ K+ F+ ++S+E+R+P+  +IG  +L+  +    L+  Q
Sbjct: 218 ERDEREAALERACEDADIANQAKSDFLANMSHEIRTPMNGVIGMAELIMET---DLDEDQ 274

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y E IS S T LL ++NDIL+ + ++AG ++LN +   L   + +V   ++ + +   
Sbjct: 275 QIYAETISKSGTALLTIINDILNFSKIEAGKVELNLAPFNLLTAIEDVVTLLSPRANAKG 334

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFS 722
           + I +  D  L  F   D  R+ Q+ + I+ NA+ F+  G   V +   +++ +      
Sbjct: 335 VEIILRYDPNLPEFFEGDVGRVRQVITNIIGNAVKFTDVGYVHVDVSGGKNSENYSLTIK 394

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP +  ++VF+ F            G GLGL+I    + L GG V+++S    
Sbjct: 395 VADTGIGIPANRLEAVFSAFEQVDSGATRSFEGTGLGLAISARLLALMGGEVAVASKAGE 454

Query: 781 VTTINCRIPS 790
            +    ++P 
Sbjct: 455 GSIFTVQLPL 464


>gi|329113957|ref|ZP_08242724.1| Aerobic respiration control sensor protein ArcB [Acetobacter
           pomorum DM001]
 gi|326696704|gb|EGE48378.1| Aerobic respiration control sensor protein ArcB [Acetobacter
           pomorum DM001]
          Length = 1105

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 120/258 (46%), Gaps = 5/258 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +   +R ++AL    E    A   K  ++  +S+E+RSPL  I+G+  LL+ 
Sbjct: 627 QTRLLMNEIRARMRMDQALQNAREKAEAASLAKTRYISGISHEIRSPLNAIMGYIQLLQH 686

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                +  ++ + +  +  S   + ++++ +LD++ ++AG ++L+  TI L   L  V Q
Sbjct: 687 DAR--MPPERQKTLSIMRESGDHITSILSGLLDISRIEAGRIELHSDTIPLAAFLESVAQ 744

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  +     ++              D  RL Q+   +LSNA+ ++ +GS V   A    
Sbjct: 745 MMRPQAQAKGLKFYWKPQFLPSVVTCDEHRLRQVLLNLLSNAIKYTQQGS-VTFSARWHA 803

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               F+V++ GS I  +  + +F+ F          G GLGL+I +    + GG ++ +S
Sbjct: 804 QIAEFTVEDTGSGIAIEDQERIFDPFERATATANIPGTGLGLTITKLLTEVMGGELTFTS 863

Query: 777 SDEGVTTINCR--IPSKE 792
           +    +    R  +P K+
Sbjct: 864 TMGKGSCFKLRLMLPDKD 881


>gi|21242035|ref|NP_641617.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107436|gb|AAM36153.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1068

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K G+L+++Q +Y 
Sbjct: 359 AQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVKYA 418

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L   T+V   +L  ++ +      +  + ++
Sbjct: 419 QAILSSNNDLLALINDILDLSKIEAGHVELADETVVTGSVLQRLRDTFEPLARQKGLALE 478

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +  + G     V D QRL QI   +L+NA+ F+  G   +L  A   G   F+V + G  
Sbjct: 479 ITAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKVGLLVQASAPGRVRFAVTDTGIG 538

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 539 IAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLE 598

Query: 788 IPS 790
           +P+
Sbjct: 599 LPT 601


>gi|284052622|ref|ZP_06382832.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 574

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 192/491 (39%), Gaps = 39/491 (7%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +     D +  +   L  +   + +      +   N +  E+              +E++
Sbjct: 106 ESPERRDTIKRSPSFLQQMGCIVIVLSLEGKIVEWNHAAEEISGY---------RREEVI 156

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-----QTLHVIVTS----- 406
           +       LPE +     K        + +      H+  G     Q +H  +       
Sbjct: 157 DRNYWMLCLPESV-RDGIKFRYLEAIATQQPV-HVHHILLGSDRRQQQVHFKIVPWRNYC 214

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
               G I   E +    D   +     +   + I +L   +A+F P+ R    +  +   
Sbjct: 215 GDILGAIVTGEAVACSPDGSCQEELECERLQKLISYLPLPIAMFDPEMRYLAYSEGWIQH 274

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            K +   L   +H  ++   C   +  +    L    +++ +D      G+L     +V 
Sbjct: 275 LKPQMYSLIGLSHY-DVFPDCKNDWKLAHQKALRGEKVSALEDSWIREDGSLIYHGWTVG 333

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
            +          +L  + + +       L E   A   A + K+ F+  +S+E+R+P++ 
Sbjct: 334 PWYRNSGEVGGIILVIIPLNN-------LVETRNAALDAVQFKSRFLAQMSHEIRTPMSG 386

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G  +LL  +    L  +Q  Y   I   +  LL ++N+ILDL+ ++AG   L      
Sbjct: 387 VLGMVELLMQTH---LTPQQKDYTPTIYRRAKHLLTVINEILDLSKLEAGETHLESHDFD 443

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           L D L  V   ++ K  +  + + ++ +  +  ++  D  RL Q+   +++NA+ F+  G
Sbjct: 444 LQDCLETVVDLLSVKAEDKQLELIILLEPNIPRYLKGDGMRLQQVLINLVNNAIKFTQSG 503

Query: 706 STVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
             +I    R    D  +  FS+++ G  I +++   +F  F   S+A   Q  G GLGLS
Sbjct: 504 HIIIRLTPRLINQDQINIYFSIEDTGLGISDELQPQLFQPFSPASSATNRQYSGTGLGLS 563

Query: 760 IVESFINLHGG 770
           I +  +NL GG
Sbjct: 564 ICQHLVNLMGG 574


>gi|225863934|ref|YP_002749312.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225790705|gb|ACO30922.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 459

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 221 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 279

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 280 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 339

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++
Sbjct: 340 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDD 397

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 398 GIGIAKEHLPYIEQSFYQINNHTT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 455

Query: 787 RIPS 790
           ++P 
Sbjct: 456 KLPL 459


>gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 510

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 144/378 (38%), Gaps = 19/378 (5%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + + V+   +       +     ++++   V      G ++  NP    L       +
Sbjct: 142 LQQEIRVRHQTQQILQETERRWRSLLENVQLLVVGLDWQGDVEYMNPFGLGLTGYTSAEV 201

Query: 475 SPGTHIRN-IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                    I ++      ++    L+      + +   +  G   L++ +      I  
Sbjct: 202 FGKNWFNTFIPSSEQPQLKQTFHELLYHNSHAYYQNSILTKSGEERLIAWNNTVLRDITG 261

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             A  M    ++T     ER              +KN F+  VS+ELR+PLT++ G   L
Sbjct: 262 AIAGIMSIGEDITQRQAVER--------------MKNEFISLVSHELRTPLTSMRGSLGL 307

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK     +   K  + ++        L  LVNDIL L  +D+G + L      + DL+  
Sbjct: 308 LKMGVYDNQPDKAKRMLDIAVTDCDRLGRLVNDILSLERLDSGQVTLVKEVCDVADLIKH 367

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             ++I        I I+V               ++Q  + +LSNA+ FS   +T+ +   
Sbjct: 368 SVEAIDAIAEAAGIAIQVT--PLSAQVYVAPDTIIQTLTNLLSNAIKFSESNTTITVGVQ 425

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
             +   +F V + G  IP +  + +F RF         Q+ G GLGL+I  S I  HGG 
Sbjct: 426 HQSDCILFHVTDQGRGIPTEHLERIFGRFQQVDVSDSRQKGGTGLGLAICRSIIQQHGGG 485

Query: 772 VSISSSDEGVTTINCRIP 789
           +   S+    +T    +P
Sbjct: 486 IWAESTLGSGSTFYFTLP 503


>gi|58265008|ref|XP_569660.1| protein-histidine kinase [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|57225892|gb|AAW42353.1| protein-histidine kinase, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1390

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 14/242 (5%)

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            T+  +    A+  K+ F+ ++S+E+R+P+  IIG T L   S+   L  +Q + +  +S+
Sbjct: 824  TKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESE---LTRQQRENLMIVSS 880

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             +  LL +++DILD++ ++AG M +      L   +  V +++  K  +N + +    D 
Sbjct: 881  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 940

Query: 676  KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNG 727
             +    + D  RL Q+ + ++ NA+ F++KG  V L           D  +  F V + G
Sbjct: 941  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKG-QVALSCRVKRYVTVADAVELEFCVADTG 999

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              I +D    +F+ F        R   G GLGL+I +  +NL  G + + S     +   
Sbjct: 1000 IGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESEYGQGSRFY 1059

Query: 786  CR 787
              
Sbjct: 1060 FT 1061


>gi|229520292|ref|ZP_04409718.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
 gi|229342658|gb|EEO07650.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 736

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 173/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 149 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 204

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 205 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 262

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 263 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 322

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 323 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L  KQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 383 LKDE---LTPKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 498

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +    R
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR 578


>gi|256830426|ref|YP_003159154.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579602|gb|ACU90738.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 602

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 155/386 (40%), Gaps = 29/386 (7%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGET-IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            +  F N+  +++   +     K++ E  ++ +  G+ V   +GRI   N A + ++   
Sbjct: 232 LVVAFNNMVERIESNMQTIVKQKMESEAVLNGMKAGLIVLDGNGRILRGNYAAQEIFPGL 291

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                            S   +  D  D  AA+    + +   +   + L      + SI
Sbjct: 292 STFAGHKP------MELSLLQDLQDACD--AALKKRLEGDFSQVGVMVSLAGGRNFDVSI 343

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +P+     +   +   D    +R            ++I+  FV +VS+ELR+PLT+I G+
Sbjct: 344 VPIKGDAELGVIMVFHDITEIKR-----------VEQIRRDFVANVSHELRTPLTSIKGY 392

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + L          +   ++E I  ++  +  +++++L L+ ++ G ++L+  ++     
Sbjct: 393 AETLV-GIDKYDPEQTRSFLEVILRNANHMNTMLDELLQLSRLEHGKLRLDLVSVEPASA 451

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVI 709
           +    +S        NI      D    +  A+ ++L+Q+F  +  NA+ +  + +  + 
Sbjct: 452 VYSAWKSCHPL--SKNIEFTSELDASTPAVRANFEQLVQVFRNVFENAIKYVPEETAVIR 509

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINL 767
           +       + +  +++NG  IP +    +F RF            G GLGL+I    +  
Sbjct: 510 VHGHTSGPELVVFIEDNGPGIPAEDQTRIFERFYRVEKDRNSSIGGTGLGLAISRHIMAN 569

Query: 768 HGGHVSISS---SDEGVTTINCRIPS 790
           HGG +++ S        +     +P 
Sbjct: 570 HGGRITVQSPVPETGIGSRFIITLPL 595



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 104/362 (28%), Gaps = 51/362 (14%)

Query: 96  IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE--TQNDCAI 153
           +GQ  +R        DL S E  L    +  L +  E LR+     D+     T +   +
Sbjct: 35  LGQTSEREARDGAVRDLRSVEWMLSSGSFHDLEQVNEALRELAARMDIRITFMTLDGRVL 94

Query: 154 KIEG-------------------RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV 194
              G                   +  G    + +   D +  EL    ++ +        
Sbjct: 95  TDSGVTAQRVESLENHLGRPEVTQALGGEVGVGLRYSDTLGQELLYAAMRTQASGVLPEG 154

Query: 195 FKVLFDSLDFLVWHRDQA---GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
              +  +       +      G   W            G+V   +    R +        
Sbjct: 155 VVRI--ARPQSQIRKSLDRLYGQAGWVYG--LGVVFAFGLVSLTSRQVGRAIASVAQAAA 210

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
            I      K    + ST         ++  ++ +F      I+ + +  V  ++     +
Sbjct: 211 DIGQGEPGKRIRFSPST---------ELTPLVVAFNNMVERIESNMQTIVKQKMESEA-V 260

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L+ +   + + D N  +   N +  E++     F    P    LL+ L+ A         
Sbjct: 261 LNGMKAGLIVLDGNGRILRGNYAAQEIFPGLSTFAGHKPMELSLLQDLQDACD------- 313

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGGTIWMFENLTVQVDLETK 428
              K+ +   +           L  G+   V +     +   G I +F ++T    +E  
Sbjct: 314 AALKKRLEGDFSQVGV---MVSLAGGRNFDVSIVPIKGDAELGVIMVFHDITEIKRVEQI 370

Query: 429 YN 430
             
Sbjct: 371 RR 372


>gi|189466425|ref|ZP_03015210.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM
           17393]
 gi|189434689|gb|EDV03674.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM
           17393]
          Length = 628

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 126/249 (50%), Gaps = 6/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                S R ++ L +  E   ++D +K++F+ ++S+E+R+PL  I+GF+ +L  +   + 
Sbjct: 383 FYHIHSQRHKKELIQAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAET---TD 439

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  +Y+  I  ++ +LL L+NDILDL+ ++AG++   Y+ + +N  + +++ +   +M
Sbjct: 440 TPENHEYIRIIEDNNYLLLQLINDILDLSRIEAGLLDFCYTDVDVNSCIRKLEDTFRFRM 499

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              N++       K      ++ RL+Q+     SNA+ ++++GS  I      N    F 
Sbjct: 500 PA-NVKCVTEFSMKKCYIHTEKNRLMQVLGNYFSNAIKYTNQGSITIGYYPPKNEKIRFY 558

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G  I  D  +++F RFV   +   ++G GLGLSI +         V I S     +
Sbjct: 559 VRDTGCGISPDKQQTIFQRFVKLDNF--KQGTGLGLSICQMIAEKMNATVGIHSEVNKGS 616

Query: 783 TINCRIPSK 791
                 P +
Sbjct: 617 EFWIEFPYQ 625


>gi|164428217|ref|XP_956617.2| hypothetical protein NCU01833 [Neurospora crassa OR74A]
 gi|157072058|gb|EAA27381.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1951

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 123/253 (48%), Gaps = 19/253 (7%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L      L++A E K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I 
Sbjct: 1250 LKLLETKLKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQ 1306

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S+  L+ ++NDILDL+ VDAG+MKLNY       L+ +V + ++T      + +  + +
Sbjct: 1307 TSANSLIMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVE 1366

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-----VIL----KAARDNGDFIFSVK 724
              + ++V  D+ R+ Q+   ++ NA+ F+++G       V++        +     FS+ 
Sbjct: 1367 EDVPAWVKGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKVVVPNHGHLYENEIMLEFSII 1426

Query: 725  NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G    E+  + +F  F     +   Q  G GLGL I    + LHGG +   +     +
Sbjct: 1427 DTGRGFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMDGKAVLGKGS 1486

Query: 783  TINCR----IPSK 791
            T        +P++
Sbjct: 1487 TFTFTARFGLPTE 1499


>gi|323699566|ref|ZP_08111478.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459498|gb|EGB15363.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 953

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 10/259 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +         V A R+  E + A  +A+  K+ F+ ++S+E+R+P++ I+G  +++ 
Sbjct: 414 GSAIHYGEMSRRLVEANRSAEEASSAALEANMAKSMFLANMSHEIRTPISGILGMAEMMV 473

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T+    L  +Q ++++ I  +   LL+++NDILD++ ++AG M+L          L    
Sbjct: 474 TT---GLTEEQREHMDMIRDAGKSLLHIINDILDISKIEAGRMELKPRDFTFRSALETSV 530

Query: 656 QSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKA 712
           +S   +   N +  +   +D        D  RL Q+   ++ NAM F+ +G    ++   
Sbjct: 531 RSFGPQAELNGLVFRHDVADDVPARLNGDPDRLGQVLWNLIGNAMKFTPRGLVELIVEVV 590

Query: 713 ARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
           AR  G     F V++ G  IPED   +VF+ F         + +G GLGL+I    +N+ 
Sbjct: 591 ARKEGRVCLQFKVRDTGVGIPEDKLDAVFDSFTQADSSLRKKHQGTGLGLTISRQLVNMM 650

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG + + S+    +T    
Sbjct: 651 GGEIGVESAVGKGSTFFFT 669


>gi|298247709|ref|ZP_06971514.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550368|gb|EFH84234.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 747

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 115/703 (16%), Positives = 237/703 (33%), Gaps = 91/703 (12%)

Query: 120 KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL-------RILSLD 172
              H+  L K  + +      FDL         I ++   + +   +       R + + 
Sbjct: 85  TPSHHEHLEKHLQAV-----GFDLAQAVATGTYIPLDAATTMARFLVDGQPDSTRFIEVI 139

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
           G   E A    +  ++   +             +W + +         +  +  E    +
Sbjct: 140 GPLIEQATQGGRRVRIFGEMVAL----------LWAQGKQ-------AAAIRLEELWNAL 182

Query: 233 FQKAIGE-----SRKLFKEEIKKRMISS-SALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
            Q+           + F     +   +    L  +     S  +    +  +   +L   
Sbjct: 183 GQRYTFSLFCAYPLQDFDGRKHEAAFTHICQLHSHLVPPTSYSQLTEQERLRTFTLLQQK 242

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
               + + +++     ++L     I+ +   AI     +  +   N +   ++      +
Sbjct: 243 ANT-LQVKITESQAAQERLRALAAIVDSSDDAILSKTLSGIITSWNSAAQRIYGYTAQEM 301

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWH-LPNGQTLHVI 403
                                  +     E I +  +  E   H +T     +GQ L V 
Sbjct: 302 IGTHVTRLF------------PPDQYEEFEQIMARIRLGERVDHFETRRVRKDGQELLVS 349

Query: 404 VTSNP---RGGTI----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           VT +P     G I     +  ++T Q  LE K   L             G+ V    GR+
Sbjct: 350 VTISPIKDEDGVIHGASTIARDITEQRRLEAKSQRL-------FASNLIGIFVADETGRL 402

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
             +N AF  L    ++          + A    ++  S    L  +      D     Q 
Sbjct: 403 LETNQAFLDLVGYTQDEWQA----EALYAMTPPFFPASFLRPLIQSARAG--DGSSDPQE 456

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T+ L          + L   +   T +     +   +AL          ++ K+ F+   
Sbjct: 457 TILLHKSGKALPIFMALTCIEHTQTCIGFVLDISERKAL----------EQRKDIFIGMA 506

Query: 577 SYELRSPLTNIIGFTDLLKT-----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           S+EL++P+T++ GF  L++            N K  QY+  + A    L  L+ND+LD++
Sbjct: 507 SHELKTPVTSLKGFLSLVQRLLSQQGMSQQGNEKILQYLARMDAQIEKLTKLINDLLDVS 566

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +  G M      + ++ L+ E+ + +      + +   ++      +   D  RL Q+ 
Sbjct: 567 MMQTGQMIYREEQVDVDTLVREIVEDVQETTQTHRL---LVQGEARATVFGDPDRLGQVL 623

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--G 749
             +L NA+ +S   +TV++         +  V++ G  I ++  + +F RF     +   
Sbjct: 624 INLLQNAIKYSPNANTVLIHLGTTEEQVLIRVQDFGLGISKEHHQKIFERFYRVTDQEEK 683

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              G+G+GLSI +  +  HGGH  + S        +  +P  +
Sbjct: 684 TYPGMGIGLSISQEIVKRHGGHFWVESERNKGAIFSLSLPLMQ 726



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 85/284 (29%), Gaps = 42/284 (14%)

Query: 45  IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN------------CLTIVWDGKDET 92
           +R    L +K N     ++E      +  +L    +             +   W+   + 
Sbjct: 233 LRTFTLLQQKANTLQVKITESQAAQERLRALAAIVDSSDDAILSKTLSGIITSWNSAAQR 292

Query: 93  PEIIGQLHQRIDIPQ-----TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAET 147
             I G   Q +                FE  +      +     E  R      +L+   
Sbjct: 293 --IYGYTAQEMIGTHVTRLFPPDQYEEFEQIMARIRLGERVDHFETRRVRKDGQELLVSV 350

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW 207
                   +G + G+    R +      +E      K ++L         L       ++
Sbjct: 351 TISPIKDEDGVIHGASTIARDI------TEQRRLEAKSQRLFAS-----NLIG-----IF 394

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQ-KAIGESRKLF--KEEIKKRMISSSALEKNFCE 264
             D+ G +L  N ++          +Q +A+      F     ++  + S+ A + +   
Sbjct: 395 VADETGRLLETNQAFLDLVGYTQDEWQAEALYAMTPPFFPASFLRPLIQSARAGDGSSDP 454

Query: 265 TVSTLEHGNNKSYKIVRVLN----SFGEAGIAIDVSKEITVNDQ 304
             + L H + K+  I   L     +    G  +D+S+   +  +
Sbjct: 455 QETILLHKSGKALPIFMALTCIEHTQTCIGFVLDISERKALEQR 498


>gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
 gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
          Length = 1311

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 10/224 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+P+  +IG + L   S+   L      Y+E I+ SS ILL +++DILD +
Sbjct: 571 FLANMSHEIRTPMNGVIGLSGLALKSE---LPEHARDYLEKINRSSLILLRIIDDILDFS 627

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
            ++AG M +  +   L+D+L +V   IA +  +  + +   S+  L  + V D  RL QI
Sbjct: 628 KIEAGQMSIEATEFDLDDVLQDVATLIADRQEQKPVEVVFSSEPDLPRTLVGDPHRLGQI 687

Query: 691 FSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              ++ NA+ F+  G  V+  +A     D      SV + G  + ++    +F  F    
Sbjct: 688 LLNLIGNALKFTEAGEIVVRISATERLEDQLRLQVSVADTGIGMTDEQMARLFKAFSQAD 747

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               RR  G GLGL+I +  + L GG +S+ S+    +T +  I
Sbjct: 748 GSTTRRFGGTGLGLAICKQLVELMGGTISVESTPGAGSTFSFTI 791


>gi|295690718|ref|YP_003594411.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432621|gb|ADG11793.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 602

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 131/266 (49%), Gaps = 7/266 (2%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E        A  +     +T++ R +            A+  K  F+  +S+E+R+PL  
Sbjct: 181 EVRARLASEALNVELQRELTENRRLKTEAQALALTAETANRAKTEFLATMSHEIRTPLNG 240

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G   ++     G L+  Q + ++ ++AS   LL+++N ILD++ ++AG M++N +   
Sbjct: 241 VLGMAQIMA---AGELSPDQRRRLDTVTASGQSLLSVINAILDISKIEAGKMEINPAPFD 297

Query: 647 LNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L+  L+ ++Q       +  +   + I++G  G  + D  RL Q+ S ++SNA+ F+  G
Sbjct: 298 LSAHLDALRQLYGGLARDKELDFSLEIAEGAQGWRMGDADRLRQVMSNLISNAIKFTDVG 357

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
            TV +    D+   +  V ++G+ IPE     +F +F        RR  G GLGL+I ++
Sbjct: 358 -TVRVFVEGDDKTIVARVTDSGAGIPEAERGRLFTKFAQLDSSSTRRAGGSGLGLAICKT 416

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              L GG +S S+++ G       +P
Sbjct: 417 LSELMGGSISYSTAEGGGACFTVTLP 442


>gi|229527202|ref|ZP_04416595.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
 gi|229335210|gb|EEO00694.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
          Length = 1147

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|269968417|ref|ZP_06182433.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
 gi|269826965|gb|EEZ81283.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
          Length = 573

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E    A+  K+ F+  +S+E+R+PL +++G  D+LK S   +L+ +Q   +  +
Sbjct: 200 QLAKAREEAELANRSKSEFLAMMSHEIRTPLNSVLGMLDILKQS---TLSEEQIDALSQM 256

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL +++DILDL+ +++G  +LN   I L D +  V         + N++ K+  
Sbjct: 257 ECSAELLLAIISDILDLSKIESGRFQLNEQWINLRDTVTFVISQQKQIAKKKNLKFKLNC 316

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                  F  D  RL QI   ++ NA+ F+ +G  V +  +  + + + S+ + G  I +
Sbjct: 317 TVTNDKQFWIDSTRLSQILFNLIGNAIKFTDEGE-VKVSVSEQDAELVISISDTGIGISK 375

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F  F        RR  G GLGL+I +  + +  G +++ S +   +T    IP
Sbjct: 376 AKQEHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGKIAVKSDEHVGSTFTISIP 434


>gi|238920900|ref|YP_002934415.1| hybrid sensory histidine kinase BarA [Edwardsiella ictaluri 93-146]
 gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA [Edwardsiella
           ictaluri 93-146]
          Length = 918

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   +      L++ Q  Y+  I
Sbjct: 273 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQVMKTPLSATQIDYLHTI 329

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L +   +L + ++EV   +A   H+  + + +  
Sbjct: 330 ERSANNLLTIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNV 389

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGS 728
              +    + D  RL Q+ + +L NA+ F+ KG+  + ++        +     V + G 
Sbjct: 390 HNDVPEHVLGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTSQAVELEIQVHDTGI 449

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  IN  GG ++  S     +T   
Sbjct: 450 GISERQQSQLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWF 509

Query: 787 RI 788
            I
Sbjct: 510 HI 511


>gi|116249380|ref|YP_765221.1| two-component histidine kinase/response regulator motif-containing
            protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254030|emb|CAK12427.1| putative repetitive protein with two-component sensor and regulator
            motifs [Rhizobium leguminosarum bv. viciae 3841]
          Length = 2099

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 139/306 (45%), Gaps = 22/306 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              +      +++ LQ T E L     +         + +       +  +A RAL EK  
Sbjct: 1363 QQLAAELQTQQRELQQTNEQLGQKAQQL------EERNVEVEAKNQEIEQARRALEEKAT 1416

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ KQ ++ + I  + T L
Sbjct: 1417 ELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEFAKTIHGAGTDL 1476

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
            LNL++DILDL+ +++G + ++   I +++LL  + +    +    N+   V     +  S
Sbjct: 1477 LNLISDILDLSKIESGTVSVDAEEISVSNLLEVMARPFRHEAENRNLSFAVEVGADITKS 1536

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNN 726
             + D +RL QI   +LSNA  F+++G   +  A+  +G                F V + 
Sbjct: 1537 IITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASATSGWSSDHPSLKHAPSVIAFEVVDT 1596

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP +  + +F  F        R   G GLGL+I     NL GG + + S+    +T 
Sbjct: 1597 GIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSTPGVGSTF 1656

Query: 785  NCRIPS 790
               +P 
Sbjct: 1657 VLYLPL 1662


>gi|88797996|ref|ZP_01113583.1| two component sensor kinase [Reinekea sp. MED297]
 gi|88779193|gb|EAR10381.1| two component sensor kinase [Reinekea sp. MED297]
          Length = 1120

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT      +      + AL    E    A+  K+ ++  +S+ELR+PL +I+G+T LL
Sbjct: 640 NVQTKRLLQEIEAHQVTDAALQTAKELAENANAAKSRYLSGISHELRTPLQSILGYTQLL 699

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 + +S+    +  I  S   L +L+  +LD++ ++AG + L+ +++   +L+ ++
Sbjct: 700 NDQPDTTPSSRTR--LNAIHRSGQYLADLIEGLLDVSKIEAGKLDLHLTSVAFPELVQQI 757

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     I  +    G L ++V  D +RL QI   +LSNA+ ++  G  V L   
Sbjct: 758 ADMFRMQAKAKGIEFRTDIQGTLPAWVKTDEKRLRQILINLLSNAVKYTDDG-YVRLTLR 816

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
             +    F+V++ G  I ED  + VF+ F    N    +  G GLGL+IV+  + + GG 
Sbjct: 817 YRSQVAEFTVEDTGHGIAEDQHQRVFSPFERVENEASSRIPGTGLGLTIVKLLVEIMGGD 876

Query: 772 VSISSSDEGVTTINCRI 788
           + +SSS    +     +
Sbjct: 877 IQLSSSIGQGSRFTVSL 893


>gi|326565978|gb|EGE16139.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           103P14B1]
 gi|326575373|gb|EGE25298.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           101P30B1]
          Length = 988

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 124/293 (42%), Gaps = 20/293 (6%)

Query: 515 QGTLELLSD------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKA 565
            G   LL D        L  S   L N                E     +    +A    
Sbjct: 258 SGEFALLRDDFTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAIST 317

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K++F+ ++S+ELR+PL +I GF +LL     G L  +Q+ YV+ I  SS  LL LVN
Sbjct: 318 SQAKSAFLANISHELRTPLNSIDGFINLLARK--GELTGEQNLYVQTIKKSSAHLLALVN 375

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADR 684
           D+LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D 
Sbjct: 376 DVLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDS 435

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F 
Sbjct: 436 LRVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFS 495

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSI-----SSSDEGVTTINCRIP 789
                   +  G GLGL I +    L GG +        +      T    +P
Sbjct: 496 QGDLSVTRRYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|283788151|ref|YP_003368016.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Citrobacter rodentium
           ICC168]
 gi|282951605|emb|CBG91305.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Citrobacter rodentium
           ICC168]
          Length = 778

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    V D  RL QI   ++SNA+ F+ +G  V ++   D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  IP+D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKSMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           ++S     +T    
Sbjct: 489 VASQTNKGSTFTLT 502



 Score = 45.7 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  + + +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQSTFEQLKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q    +   ++  E   ++I +   EK F   VS           G    ++I
Sbjct: 189 GKS--EKQLVHLKPADVYSPEAAAKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|218892432|ref|YP_002441299.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218772658|emb|CAW28443.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 651

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L    E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++      +Q
Sbjct: 244 EQEQAISQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQ---TREQ 300

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    + S+  LL ++NDILD + ++ G ++L      L +L+            +  
Sbjct: 301 AEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRG 360

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++     L       D  R+ QI   +L NA+ F+ +G+  + L+    + D +   
Sbjct: 361 LALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLT 420

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  I  +  + +F+ F         +  G GLGL+I  +     GG +   S +
Sbjct: 421 CAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKE 480

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 481 GSGSTFTLEIPL 492


>gi|188585612|ref|YP_001917157.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350299|gb|ACB84569.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 597

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 152/370 (41%), Gaps = 28/370 (7%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T+   L  + N L  +    ++++ +GV        + L NPA RS              
Sbjct: 248 TIMSQLTEEKNRLSTL----LNNMPDGVIEINHKSEVTLINPAARSFLNINAYDSVDQQE 303

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           + ++           D  +    ++ S +   +         ++ ++   + PLP     
Sbjct: 304 LVSLTRNF-------DLNNAVTQVLKSGEQVSRETD-----FNNQIVRMYVTPLP----- 346

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                  +  R    + +    L K ++++  F+ ++S+EL++PLT+I GF + LK   L
Sbjct: 347 ----LFEEGSRGAVVILQDITDLTKLEQMRKEFISNISHELKTPLTSIKGFVETLKEETL 402

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G  N+ Q +++  I   +  +  L+ND+  L+ ++   ++ N   + + + L++      
Sbjct: 403 GENNT-QREFLNIIEEETDRVSRLINDLTILSRLETNKVEFNQDEVNVLNFLDKTVSISQ 461

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +  ++  RI           + D  ++ Q+   ++ NA   +  G+ + LKA  +    
Sbjct: 462 KRWQQDGYRIYRGGVPFDLKALMDEDKIQQVILNLVDNACRHNPPGTKIKLKAVSEKDYI 521

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
            FSV +NG  IPE+  + +F RF            G GLGLSI +  +  H   +++ S 
Sbjct: 522 RFSVTDNGKGIPEEDKERIFERFYRVDKSRYRDYGGTGLGLSIAKHAVIGHNSSLNVISR 581

Query: 778 DEGVTTINCR 787
               TT    
Sbjct: 582 VGRGTTFYFY 591



 Score = 37.6 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 42/139 (30%), Gaps = 19/139 (13%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + ++      +L+N+   +   +    +   N +      I+              + +
Sbjct: 252 QLTEEKNRLSTLLNNMPDGVIEINHKSEVTLINPAARSFLNINA------------YDSV 299

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RGGTIW 414
                +    N+      +  V KS E         N Q + + VT  P       G + 
Sbjct: 300 DQQELVSLTRNFD-LNNAVTQVLKSGEQVSRETDF-NNQIVRMYVTPLPLFEEGSRGAVV 357

Query: 415 MFENLTVQVDLETKYNTLV 433
           + +++T    LE      +
Sbjct: 358 ILQDITDLTKLEQMRKEFI 376


>gi|167747901|ref|ZP_02420028.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662]
 gi|167652632|gb|EDR96761.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662]
          Length = 814

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 116/232 (50%), Gaps = 9/232 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +  R+  E+K++F+ ++S+E+R+P+  + G ++LL       L++KQ +YV  I+ SS  
Sbjct: 318 KNQRRIAEMKSAFLANMSHEIRTPMNAVTGVSELLLRE---DLSAKQREYVNTIAHSSNS 374

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+++NDILD + +++G   L      L  L+ ++      K+    +   +  D KL +
Sbjct: 375 LLSVINDILDFSKIESGKFTLIEEEYSLRSLITDITALTVLKIGAKPVCFYIDLDEKLPA 434

Query: 680 F-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSIPEDMC 735
           F   D  R+ QI   +L NA+ F+ +G   + L    +NGD   + +V++ G  I +   
Sbjct: 435 FLYGDMTRVKQIMVNLLGNAVKFTEQGHICLRLSGRIENGDFWLVMTVEDTGIGIRKQDM 494

Query: 736 KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +F+ F      H     G GLGL+I  +   +  G + + S     ++  
Sbjct: 495 DRLFHSFEQVDTHHSHSTGGTGLGLAISRNLAEMMEGSIDVESVYGEGSSFT 546


>gi|27466937|ref|NP_763574.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57865895|ref|YP_190074.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           RP62A]
 gi|242243237|ref|ZP_04797682.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           W23144]
 gi|251811383|ref|ZP_04825856.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874740|ref|ZP_06283619.1| PAS domain S-box [Staphylococcus epidermidis SK135]
 gi|293367562|ref|ZP_06614215.1| sensor histidine kinase YycG [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672854|sp|Q5HK19|WALK_STAEQ RecName: Full=Sensor protein kinase walK
 gi|81844243|sp|Q8CU87|WALK_STAES RecName: Full=Sensor protein kinase walK
 gi|27314479|gb|AAO03616.1|AE016744_19 two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57636553|gb|AAW53341.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           RP62A]
 gi|58003339|gb|AAW62232.1| two-component sensor histidine kinase [Staphylococcus epidermidis]
 gi|242233186|gb|EES35498.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           W23144]
 gi|251805132|gb|EES57789.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296456|gb|EFA88971.1| PAS domain S-box [Staphylococcus epidermidis SK135]
 gi|291318275|gb|EFE58668.1| sensor histidine kinase YycG [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399898|gb|EFV88144.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           FRI909]
 gi|329728493|gb|EGG64929.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU144]
 gi|329736055|gb|EGG72328.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU045]
          Length = 610

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 152/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 228 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRV 287

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++N     +    +  +     +  +       ++  +  +   + +   ++E   +  
Sbjct: 288 RIANDMALKMLGLAKEDVIGYYMLGVL--NLENEFSLEEIQENSDSFLLDINEEEGIIAR 345

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                    + +S I             + D    ++            +  +  FV +V
Sbjct: 346 ---------VNFSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 385

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+             ++      +  ++ LVND+L L+ +D  
Sbjct: 386 SHELRTPLTSMNSYIEALEEGAWQD-KELAPSFLSVTREETERMIRLVNDLLQLSKMDNE 444

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    I  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 445 SDQITKEIIDFNMFINKIINRHEMAA--KDTTFVREIPQQTIFAEIDPDKMTQVFDNVIT 502

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 503 NAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 562

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 563 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 601


>gi|283850786|ref|ZP_06368072.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573709|gb|EFC21683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 661

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 104/502 (20%), Positives = 200/502 (39%), Gaps = 38/502 (7%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNR---SFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
            +IL    V+I   D +  + F N    +     + DL F        + L  + SA   
Sbjct: 12  EQILQFAPVSIMTIDASGVITFVNEWHLANFARGKRDLEFFLGKKL--QCLPGIVSAGIA 69

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
            +  +  + +        + E         N + + ++      GG + + E++T  V  
Sbjct: 70  EDIQSILSGRTIHLEAVYTDECSGGQSAYQNIRGIPILEDGVVTGGIV-IREDVTKLVLS 128

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           +   +    +    +D   + + +   DG I + N           + L        I A
Sbjct: 129 QHLLSENQAIFKALLDATHDSIILSDLDGYILILNEEAARRRGQTVDAL--------IGA 180

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-- 543
           +  RY       +  A ++ +    R  L    E   +     S+ P+ +    + ++  
Sbjct: 181 SLYRYMAAELAEERRAHLLEAA--RRNELLCYEERQENRYYLISLCPIADDSGRVIYMAS 238

Query: 544 ---NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T     E  L ++ E +  A + K+ F+ ++++ELR+PL  IIG T L      G
Sbjct: 239 YSRDITALKETESQLRKEKELVFSASQAKSQFLGNITHELRTPLNGIIGATQLALQGGSG 298

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                Q +    +  S   LL++VN++L+LA +DA  ++   S     DLL  + +S + 
Sbjct: 299 ---EDQEELWGIVEDSGKRLLSIVNNVLELADIDAAAIEPVLSVCDARDLLAALVRSYSV 355

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-- 717
           +    +IR     D ++    V D  RL QI S ++ NA+  +  GS + ++  + +   
Sbjct: 356 RAKVKDIRFVTTVDPRIPHRLVGDVFRLRQILSNLVDNALKCTGAGS-IEIRVKKISTSR 414

Query: 718 --------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
                     +F V++ G  I +D+   +F  F    H    +  G GLGLSI    + +
Sbjct: 415 VAFAPHYCTLLFMVRDTGIGISKDLQSKIFEDFELAEHYLTKRVSGAGLGLSIARHLVEM 474

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG + + S+ +  +T    +P
Sbjct: 475 LGGQIWVKSAPKCGSTFYFTVP 496


>gi|171061038|ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778483|gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 589

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 7/240 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL       + A+  K  F+  +S+ELR+PLT+I GF +L++          Q+  +   
Sbjct: 350 ALIASEARAQSANHAKTEFLAAISHELRTPLTSIRGFAELMEKRIEQPKFKDQAGMI--- 406

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
             ++  L  L+  ILD A ++AG M++  + + +  L+       A    E  + ++V I
Sbjct: 407 RRAAEHLNALLTQILDFAKIEAGAMRVGATPVAIRPLVRGTADFFAVSAAEKGLELRVQI 466

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D    + + D  RL Q+ + +LSNAM F+  G  V ++  RD       V + G  IP 
Sbjct: 467 ADDVPETLLTDELRLKQVLNNLLSNAMKFT-AGGHVAIEVERDATQLRLHVVDTGPGIPA 525

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF     +   Q  G GLGL++  S   L GG + ++S+          +P 
Sbjct: 526 EQHELIFERFRQADSQVAHQHGGTGLGLALSRSLAELMGGTLGVTSTPGEGARFTLTLPL 585


>gi|332141178|ref|YP_004426916.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551200|gb|AEA97918.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1111

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 91/515 (17%), Positives = 195/515 (37%), Gaps = 51/515 (9%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           +       I      AI   +    ++  N +   ++      L    +  E++   R  
Sbjct: 267 ESERIQRAITDTAVDAIMTVNDKGIIKTANPAVEHIYGYKPDELIGLHA-SEIVPHERRH 325

Query: 363 NKLPEQLNWKTWK-ENIFSVYKSSETHKDTWHLPNGQTLHV---IVTSNPRGGTIWM--F 416
               +  + +    E I    +  E  +       G+ + V   +  +   G  +++   
Sbjct: 326 LYDDDFFSQRVVPTEQIIGTGREVEILRKG-----GEKIPVRLGVGYTKIDGKPVFVSFA 380

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +L  + ++E             I ++  GV              A+R L       +  
Sbjct: 381 SDLRKRKEIEDALRESEAKFRSLISNIP-GV--------------AYRCLNMPGWPMVFI 425

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER----------KSLQGTLELLSDSVL 526
              +  +       +   D    F+ +    D ER           S +  +   S  V 
Sbjct: 426 SDAVTEVTGYSPEDFVLPDPKRSFSDLYHPDDVERLCNVNSDGGPFSYEYRIVAKSGEVK 485

Query: 527 EYS----IIPLPNAQTMLTFVNVTDSVR---AERALTEKNEALRKADEIKNSFVQHVSYE 579
             +     +   +   +     ++D  +    E  L    E   +A   + +F+ ++S+E
Sbjct: 486 WVTEHGVHVKDEDGNVLYVDGFISDITQRRVMEDELKAAKEKAEQAAAARTAFLANMSHE 545

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIGF+DL+      +L  +Q  ++  I+ S+  LL+L+NDILD A +D G + 
Sbjct: 546 IRTPMNAIIGFSDLMLGE---ALRDEQKSHLTTINRSARSLLHLLNDILDSAKLDKGKLD 602

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
           L+Y   ++ + L+ V  +   +     + + +  D  +   +    +R+ Q+ + ++ NA
Sbjct: 603 LDYRDFLIREELDLVVSTFWLEAKRKKVDLVLNVDASVADGYRGVPERMRQVLNNLIGNA 662

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
           + F+ +G  V +    +     F V + G  + +    +VF+ F         +  G GL
Sbjct: 663 VKFTHEG-KVEIAVRSEGELVYFDVSDTGIGMTKAQLDNVFDPFSQADASMSRKYGGTGL 721

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G +I +  + L GG++  +S +   TT   R+P +
Sbjct: 722 GTTISKQLVELMGGNICATSEEGKGTTFTFRLPLE 756



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            D+  +     ++Q    D   + +      G IK +NPA   ++  + + L  G H   
Sbjct: 259 RDVMVRAIESERIQRAITDTAVDAIMTVNDKGIIKTANPAVEHIYGYKPDEL-IGLHASE 317

Query: 483 IAATCSRYYNESDGW 497
           I     R+  + D +
Sbjct: 318 IVPHERRHLYDDDFF 332


>gi|304439016|ref|ZP_07398936.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372505|gb|EFM26091.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 593

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 147/372 (39%), Gaps = 39/372 (10%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +++LE              D+++EGV     + R+  +NP  R +            H+
Sbjct: 255 DRLELERS------KLNTIFDYMAEGVVAIDRNRRLVHANPIARKILSLS------KNHV 302

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTM 539
            ++         + D  D+             +L G +   + D   +    P  +   +
Sbjct: 303 GSVVDFSMVNIKDIDFKDV------------STLSGEVNAQIKDVFYKVKYAPYKSEGRV 350

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           L  + V   +  E  L          D ++  FV +VS+EL++P+T I  +T+ +    +
Sbjct: 351 LGVIVVLQDINEEHRL----------DVMRREFVANVSHELKTPITTIGSYTETMLDVDM 400

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              +     ++  I   +  +  LV D+L L+ +D    K NY  +   D L+    S+ 
Sbjct: 401 DLDS--IRNFLRVIDRENNRMARLVTDLLQLSNMDYKETKWNYEAVDTYDFLSTNINSLD 458

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             + E + ++ +     + S   DR    Q+F  I SNA+ ++ KG  + + A  +    
Sbjct: 459 MLIKEKHHKVTLDVPMDINSMYVDRHGADQVFRNIFSNALKYTRKGGEIKVTAKSEGASV 518

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
              V++NG  I  +    +F RF        R   G GLGLSI +  +   GG +SI S 
Sbjct: 519 EIIVEDNGIGIQREDLNKIFERFYRVEKSRSREMGGTGLGLSIAKEILESMGGRISIESE 578

Query: 778 DEGVTTINCRIP 789
               T +  R P
Sbjct: 579 IGVGTKMTLRFP 590


>gi|107101043|ref|ZP_01364961.1| hypothetical protein PaerPA_01002073 [Pseudomonas aeruginosa PACS2]
 gi|254234711|ref|ZP_04928034.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
 gi|126166642|gb|EAZ52153.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
          Length = 651

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L    E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++      +Q
Sbjct: 244 EQEQAISQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQ---TREQ 300

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    + S+  LL ++NDILD + ++ G ++L      L +L+            +  
Sbjct: 301 AEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRG 360

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++     L       D  R+ QI   +L NA+ F+ +G+  + L+    + D +   
Sbjct: 361 LALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLT 420

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  I  +  + +F+ F         +  G GLGL+I  +     GG +   S +
Sbjct: 421 CAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKE 480

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 481 GSGSTFTLEIPL 492


>gi|251780024|ref|ZP_04822944.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243084339|gb|EES50229.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 664

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 135/277 (48%), Gaps = 8/277 (2%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            ++E++   +   +T +       +        ++ E     + +K  F  ++S+E ++P
Sbjct: 357 RIIEWNWSYINGGKTFIMTGKDITNYNKLALENKRLENAIALESLKTQFFANLSHEFKTP 416

Query: 584 LTNIIGFTDLLKT--SKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L  I+    L+++   K   +  KQS  +YV  +  +S  LL LVN+++D+  +D G  K
Sbjct: 417 LNIILTTAQLMESYIKKFDDMLEKQSMGKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYK 476

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +N     + +++ E+  S+A         I   +D +      D +++ +I   ++SNA+
Sbjct: 477 VNMVNKNIVNVIEEIVLSVAEYTKNKERNIIFDTDEEEIILACDPEKIERIILNLVSNAL 536

Query: 700 DFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
            ++ K   + +  + +  + + I SVK+NG  IP++  + +F RF    +       G G
Sbjct: 537 KYTEKDGIIKVNISTNLHDNEVIISVKDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSG 596

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +GLS+V+S + +H G + I+S  +  T I   +P K+
Sbjct: 597 IGLSLVKSIVEMHEGKIWINSESDEGTEIIFTLPIKK 633


>gi|167748258|ref|ZP_02420385.1| hypothetical protein ANACAC_03002 [Anaerostipes caccae DSM 14662]
 gi|167652250|gb|EDR96379.1| hypothetical protein ANACAC_03002 [Anaerostipes caccae DSM 14662]
          Length = 998

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 92/526 (17%), Positives = 196/526 (37%), Gaps = 43/526 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNR-YLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +    +         NL   +  F ++   L       + + +     L    S+D   +
Sbjct: 1   MDQQQEFLFLKSTYENLPTGVMQFQRDGDRLTL-----LHINDFGCKILGYETSSDYSFD 55

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-------TLHVIVTSNPRG 410
           F    +KLP    +  + + +  +    +    T  +  G+       T  ++ +S    
Sbjct: 56  FHSFIDKLPGNA-YDEFIDALSRLKNIGDHFPFTRPIYVGEKKSWLSGTASLLSSSALTQ 114

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD--GRIKLSNPAFRSLWK 468
             I +F + T  V+ +   +   + + + ++ +   +     +  G I   N  ++    
Sbjct: 115 TYICVFSDDTANVEKQLYSDYAKEKEIQILNEMCTLIVSQSYETLGLINTGNGKYQIYAV 174

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--------ITSFDDERKSLQ----- 515
            + +  S      +          E    +    +        IT + ++R         
Sbjct: 175 QDRDWFSQKKLEGDFDELTFHAAKELAYDEEAKELLMNATLSGITGYLNQRPDTSYSFTY 234

Query: 516 --GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
              T E       EYS +       +    ++      E  L    E  R+  + K +F 
Sbjct: 235 RIRTHESYRWKRAEYSYLKDDKTNIIFCTQDIHSEKMEEEHLARLAEKERQIHQEKMAFF 294

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  I+  ++LL    L  L+ +Q   +  I      LL ++N +L  + +
Sbjct: 295 ANMSHEIRTPMNAILNLSELLLRKNL-PLDVEQD--ISTIYEIGNGLLGIINSLLSFSKL 351

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
           D G ++L         + +++   I+ ++ + ++      D  +    + D  R+ +I +
Sbjct: 352 DTGNIQLTTGKYSPATMCSDICSIISARLSKKSLHFFTDLDPSIPRQLIGDEMRIREILT 411

Query: 693 KILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            +L+NA+ F+  G  + LK    N      +  F + + GS I E+  K +F +F     
Sbjct: 412 NLLANAVKFTVSG-NIELKLRAKNLSKTKTELSFFISDTGSGIKEEDQKHLFRQFSRVDP 470

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  +   G GLGLSI +    L GG +S+ S     +T    IP +
Sbjct: 471 KKNQTIMGTGLGLSISKKLTELMGGSISVESEYGKGSTFIVTIPQE 516


>gi|37520383|ref|NP_923760.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35211376|dbj|BAC88755.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 718

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 147/380 (38%), Gaps = 18/380 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           E +  + +   +    +  + +     I+ ++EGV V+   GR++ +N A  SL  +   
Sbjct: 351 ERIGAEAEANRRLLANLTAEKDKLELVIEAIAEGVLVYDSSGRLRTANRALWSLLDSPPG 410

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L+    +R   A       E     +F   +   +      +         VL+ +  P
Sbjct: 411 ELAHWRTLRLRDALGEPVAPERT---VFERAVREGNLASDLYRLEGSGAQPRVLQITAAP 467

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L   +  L             A+     A ++++ ++  FV  ++++LR+PL   +    
Sbjct: 468 LRTGEGELLGGV---------AVLRDITAQKESERLREDFVATLTHDLRTPLLAAVQTLG 518

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
                + G L+  Q Q +  +  S   LL LV  +L +   +AG M+L      L   + 
Sbjct: 519 FTLDGQYGPLSDGQQQILLAVIESHRELLGLVESLLTIYRYEAGRMRLRKEPTDLAAFVA 578

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +  + +       N  + V   G L     DRQ+L ++   ++ NA+ F+  G  V L+ 
Sbjct: 579 QGIEELRPLAQSRNQTLLVEVSGPLPPVPCDRQQLRRVLVNLVDNALKFTPAGGRVHLRL 638

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
               G    +V++ G  IP +    +F RF          G GLGL +    +  HGG +
Sbjct: 639 EPFEGAVRVAVRDTGRGIPPEKSVLLFVRFAQAESYAT--GTGLGLYLCRQVVEAHGGRI 696

Query: 773 SISSSDEGVTTINCRIPSKE 792
              S     +T    +P  E
Sbjct: 697 WAESEPGLGSTFYFTLPLAE 716


>gi|332705700|ref|ZP_08425776.1| putative ATPase [Lyngbya majuscula 3L]
 gi|332355492|gb|EGJ34956.1| putative ATPase [Lyngbya majuscula 3L]
          Length = 1754

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 125/262 (47%), Gaps = 1/262 (0%)

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + I L NA    T   V    R E+ + +  E  ++  E+K+ F+   S+E R+PLT I+
Sbjct: 1472 AAISLENATLYQTLHEVQVRERLEKQIRKSLEREKELTELKSRFISMTSHEFRTPLTTIM 1531

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            G T++ K       + K+  Y++ I  +   +L++++D+L +   +AG +K N + + L 
Sbjct: 1532 GVTEIFKYYSQNWTDEKKQNYLDRIQVNVKHMLHMLDDVLVVNKANAGKLKFNPAPLNLL 1591

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +   ++ + I   +      I      +      D + L  I   +LSNA  +S   ST+
Sbjct: 1592 EFCRDLVEDIELGIDTQQ-SIVFSIQCECPEVNFDEKLLRHILINLLSNATKYSPNDSTI 1650

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                     + IF +K+ G  IPE+  K +F  F    + G   G GLGL+IV+  + +H
Sbjct: 1651 NFDLICQQEEVIFKIKDQGIGIPEEDQKQLFESFHRCNNVGNIPGTGLGLAIVKQSVEVH 1710

Query: 769  GGHVSISSSDEGVTTINCRIPS 790
            GG ++++S     TT    IP 
Sbjct: 1711 GGEITVNSQVGIGTTFTVTIPL 1732


>gi|322389964|ref|ZP_08063504.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903]
 gi|321143400|gb|EFX38838.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903]
          Length = 450

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 138/382 (36%), Gaps = 30/382 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I + N           + +
Sbjct: 75  INDLSEVIRLTHENLEQETKRLTSILSYMTDGVLATNRRGQIIMVNEMAAKQLNVNPDEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T I ++ +    Y   S   ++    I S D+  + +   +         +++I   
Sbjct: 135 LN-TSILDLLSLGDDYDLRSLITEVPELTIDSQDENGEYISLRVR--------FALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   ++            +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQDKE-----------ERERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +V+     +  ++ +V D+L L+ +D    +L+         +  +
Sbjct: 235 DDGALS--EPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSQLDIELTNFTAFITFI 292

Query: 655 KQSI-----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                     ++       +             D  ++ Q+   IL+NA+ +S  G  + 
Sbjct: 293 LNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKMTQVIDNILNNAIKYSPDGGKIK 352

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +     +   I S+ + G  IP+     +F+RF          + G GLGL+I +  +  
Sbjct: 353 VGMKTTDAQLIISISDEGLGIPKKDLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQ 412

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G +   S     +T    +P
Sbjct: 413 HKGFIWAKSEYGKGSTFTIVLP 434


>gi|332702581|ref|ZP_08422669.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552730|gb|EGJ49774.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 500

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 13/244 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L         A++ K+ F+ ++S+ELR+P+  IIG  +L     +   ++    Y++ 
Sbjct: 107 ESLLRARAQAEAANKAKSDFLANMSHELRTPMNGIIGSIELAL---MKEPSTSVRNYLDM 163

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LL++VNDILDL+ ++AG  +L      L+  + ++ +++        + ++  
Sbjct: 164 GRKSALNLLDIVNDILDLSKIEAGKFELQRIPFDLDQCVTDIVEALEGIAERKGVDLRQG 223

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKN 725
            D ++    V D  RL Q+ + ++ NA+ F+ +G  +++                FSV++
Sbjct: 224 IDSEVPRRLVGDAVRLKQVLTNLIGNAIKFTDQG-RILVNVEDAGQGSDGRVRIRFSVRD 282

Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  D  K VF+ F      +  +  G GLGL+I +  + +  G + + SS    + 
Sbjct: 283 TGIGIAPDRIKHVFDSFYQANIENLAKYGGTGLGLAISKRLVEMMDGEIGVESSLGEGSH 342

Query: 784 INCR 787
               
Sbjct: 343 FFFT 346


>gi|218260366|ref|ZP_03475722.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224557|gb|EEC97207.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii
           DSM 18315]
          Length = 502

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 134/253 (52%), Gaps = 14/253 (5%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + + T     + VRA+R          ++D +K++F+ ++S+E+R+PL  I+GF+ LL  
Sbjct: 257 RDITTDKQHEEDVRAKRL-------AEESDRMKSAFIANMSHEIRTPLNAIVGFSTLLAQ 309

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                   ++ +Y+  I +S+  LL L+ DILD++ +++G ++  Y++  LN++    ++
Sbjct: 310 ---ADTEEEKQEYLRIIQSSNEFLLQLIGDILDISKIESGKLEFIYTSFRLNEIFQPQER 366

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           + + +  E  +RI   +DG      +++ RL Q+ +  LSNA+ F+S GS +        
Sbjct: 367 AFSFRA-EPGVRIIFETDGNDYYIESEKTRLTQVLTNFLSNAVKFTSSGS-IRFGYRLTE 424

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 V + GS I +    +VF+RFV       ++G GLGLSI ++ I++  G + + S
Sbjct: 425 TGIYVYVTDTGSGIAKKHLSTVFDRFVKLDMF--KQGTGLGLSICKTIISILKGEIGVES 482

Query: 777 SDEGVTTINCRIP 789
            +   +T    IP
Sbjct: 483 EEGKGSTFWFTIP 495


>gi|198246231|ref|YP_002217299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940747|gb|ACH78080.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 778

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 311

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     + +++   
Sbjct: 312 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 370 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDEG 428

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           D   F V+++G  I +D    +F  +         +   G G+GL++        GG ++
Sbjct: 429 DMLHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDIT 488

Query: 774 ISSSDEGVTTINCR 787
           +SS     +T    
Sbjct: 489 VSSLPGKGSTFTLT 502



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T       
Sbjct: 136 LKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQL 195

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------V 280
                E   ++  E  +++I +   EK F   VS           G    ++I       
Sbjct: 196 VHLKPE--DVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYD 251

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           RV    G  G   D+++     D L  
Sbjct: 252 RVGKRHGLMGFGRDITERKRYQDALER 278


>gi|50552025|ref|XP_503487.1| YALI0E03168p [Yarrowia lipolytica]
 gi|49649356|emb|CAG79066.1| YALI0E03168p [Yarrowia lipolytica]
          Length = 1147

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 16/242 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   ++   L   Q + +  +   + 
Sbjct: 500 REAAELANRAKSEFLANMSHEIRTPMNGIIGMTQLTLDTE---LTQYQREMLSIVHNLAN 556

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      L   +    ++++ K +E  + +    D    
Sbjct: 557 SLLTIIDDILDISKIEANRMTIEKIAFSLRGTVFGALKTLSVKANEKPLDLVYKVDNTFP 616

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------FIFSVKNNGS 728
            + V D  RL Q+   ++ NA+ F+  G  V L   + +             F V + G 
Sbjct: 617 DNLVGDSFRLRQVILNLVGNAIKFTESGE-VALSVRKADDQRPGSPDEMMIEFCVSDTGI 675

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D    +F+ F        R   G GLGLSI +  INL GG + + S     +    
Sbjct: 676 GIQSDKLDVIFDTFCQADGSTTRKFGGTGLGLSISKRLINLMGGDIWVKSEYGKGSQFFF 735

Query: 787 RI 788
            +
Sbjct: 736 TL 737


>gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
 gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
          Length = 1131

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT--- 556
           +AA   S  D  + ++GT        L  S   +  +      +    +   E+ L    
Sbjct: 388 WAAERASAGDLEQEIKGTERSDEIGRLAISFARMQRSIREKITLIRDQNNELEQNLKVIS 447

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++NE L+ AD++K+ F+   S+ELR+PL  ++G  + L     G +   Q + +E I  S
Sbjct: 448 QQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQKSQRRQLEMIINS 507

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L NLV+D+LD   +  G + +N   + L   +  V +  +  +    +RI       
Sbjct: 508 GQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQIPND 567

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L   +AD QRL QI   ++ NA+ ++S+G  +IL +          V + G  IP +  +
Sbjct: 568 LPLVLADEQRLEQILYNLVGNAIKYTSEG-KIILSSTVLENQIRIQVVDTGQGIPAEQLE 626

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F   +         R+G GLGLSI    I+L GGH+ +SS     TT +  +
Sbjct: 627 HIFEPLIQANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSSQPMVGTTFSFTL 680


>gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89]
 gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1]
 gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88]
 gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a]
 gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
 gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli UTI89]
 gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY
           [Escherichia coli APEC O1]
 gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli S88]
 gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli ED1a]
 gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           LF82]
 gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           IHE3034]
 gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
 gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
 gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252]
 gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263]
 gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
          Length = 918

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|327192167|gb|EGE59140.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CNPAF512]
          Length = 1262

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 120/591 (20%), Positives = 232/591 (39%), Gaps = 55/591 (9%)

Query: 223  KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
              N   E +  Q+AI E+     E  ++     +A+E++          G  ++   + V
Sbjct: 700  ADNASAEEMAPQEAIFENA---AEVQREEAEGPAAIEEDEA------TEGLEETVSQIEV 750

Query: 283  LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            L SF        +   + + D L+     +  L VA+ I   +  L   N  F+ L    
Sbjct: 751  LTSF--------IPPRVKMTDGLSAG--TVDQLPVAVLIHVGDA-LLHANPEFMRLTGYS 799

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
                         L+ LR    +   L  +  +EN            D    P    L  
Sbjct: 800  S------------LDALRDVGGIEALLQRRDLEENAAGSGTMMLVKADDTLTPVTARLQS 847

Query: 403  IVTSNPRGGTIWMF------ENLTVQVDLETK----------YNTLVKVQGETIDHLSEG 446
            +   +     + +       E  T     E +              V+     ++  ++G
Sbjct: 848  VRWEDANALMLALMPVAGKEEARTEAGRSEARPERMVEKVAKLQVEVEELRSILETATDG 907

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            V V G +G I+  N +  +L+  +E   + G     + A  S+         L    + S
Sbjct: 908  VVVIGIEGDIRSMNRSASALFNYDEQE-TRGKPFVMLFAHESQKAVLDYLHGLSGHGVAS 966

Query: 507  FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKA 565
              ++ + + G         L  ++  L ++        ++T   R E  L     A   A
Sbjct: 967  VLNDGREVIGREAAGGFVPLFMTMGRLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETA 1026

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLV 624
            +  K  F+  VS+E+R+PL  IIGF+D++   + G + + +  +Y   I  S   +L++V
Sbjct: 1027 NAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIV 1086

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            ND+LD++ ++AG M L+++ + LN+ ++E    +  + +   + I+      +   VAD 
Sbjct: 1087 NDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSHAVPDVVADL 1146

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            + + QI   ILSNA+ F+  G  +++  + + NG  +  V++ G  +           F 
Sbjct: 1147 RSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGVGMTRSELDQAMKPFR 1206

Query: 744  SNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +    R    G GLGL + ++ ++ +    SI+S+    T +    PS+
Sbjct: 1207 QVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINSAPNEGTLVEITFPSQ 1257


>gi|315648818|ref|ZP_07901913.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315275786|gb|EFU39138.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 604

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 153/378 (40%), Gaps = 41/378 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                   +    +++++ G+ +    G+I L N A       +   ++  ++       
Sbjct: 243 RTIRDNEDLLQSVLNNMTGGIVMVNRAGQIILVNRAAEKTLGIDAEVITGKSY-----RE 297

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             ++Y  +   +        F +ER      L    ++++             +      
Sbjct: 298 LKQHYELTKLMEEGLESKEDFHEER-----NLYYPVEAIIRL-------DGVTMRQEEEE 345

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           DS R    L +    +R+ + +++ FV +VS+EL++PL  + GF + L    +    +  
Sbjct: 346 DSYRGMLFLLQDVSDIRRLERMRSEFVANVSHELKTPLAAVKGFAETLLGGGVTDEKTS- 404

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +++ I   S  L  L+ DIL+L+ +++  ++++YS I L+   + + + + T   +  
Sbjct: 405 RSFLQIIYDESERLNRLIGDILELSKIESKRIQMDYSPIHLSVFFDTISEMMRTVAEKKR 464

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NGDFI 720
           I +++    +L     D  +L QIF  +LSNA++++ +G  V L A         +    
Sbjct: 465 ITLELDIPEEL-FMEGDEDKLRQIFMNLLSNAINYTQEGGRVKLTAREQHNNGSADDMVE 523

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---------RGVGLGLSIVESFINLHGGH 771
           F V ++G  IP+     +F RF        R                 IV+  ++LH G 
Sbjct: 524 FVVTDSGIGIPKKDLPRIFERFYRVDKARSRGSGGTGLGLS-------IVKHLVDLHHGT 576

Query: 772 VSISSSDEGVTTINCRIP 789
           + + S     ++    +P
Sbjct: 577 IKVESELGTGSSFIIDLP 594



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 8/183 (4%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN---DQLTHT 308
           + S           +S LE+           +    +A  A+  S +  +    D     
Sbjct: 193 LTSPLEKITRVARRISRLEYDARVKIHRQDEIGQLAQAINAMADSLQTQLRTIRDNEDLL 252

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             +L+N+T  I + ++   +   NR+  +   ID   +    S  EL +       + E 
Sbjct: 253 QSVLNNMTGGIVMVNRAGQIILVNRAAEKTLGIDAEVITGK-SYRELKQHYELTKLMEEG 311

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
           L  K       ++Y   E         +G T+      +   G +++ ++++    LE  
Sbjct: 312 LESKEDFHEERNLYYPVEAII----RLDGVTMRQEEEEDSYRGMLFLLQDVSDIRRLERM 367

Query: 429 YNT 431
            + 
Sbjct: 368 RSE 370


>gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208578|gb|EFZ93517.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 948

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQI 405

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 406 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 448

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 449 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 503

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 504 VDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRK 563

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V+
Sbjct: 564 QLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVR 622

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 683 QFTLRIPL 690


>gi|327483173|gb|AEA77580.1| Sensor histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 1147

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|285019689|ref|YP_003377400.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474907|emb|CBA17406.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 666

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 93/515 (18%), Positives = 189/515 (36%), Gaps = 53/515 (10%)

Query: 307 HTYEILHNLTVAI----AIFDQNRYLQFH----NRSFVELWEIDLAFLATNPSNDELLEF 358
           H  EI   +         +FD  R + +     N +F     +          +D +   
Sbjct: 19  HYREIFDKIDYGFSVVQVLFDGPRAVDYVFLEVNAAFERRTGM----------HDVVGRR 68

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTS--NPRGGTIWM 415
           +R  +      + + W +    V  S  + K +++    G+   V       P    I +
Sbjct: 69  MRELS----PAHEELWFQRYGEVALSGRSAKFESFAAEQGRWWAVDAFRIGAPELCQIAV 124

Query: 416 -FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            F ++T +  +E              + L   V V    G ++ +N A+   +  +    
Sbjct: 125 QFLDITERKRVERDLAESEARFSALAEGLPMPVWVLDVSGELRFTNTAYAEFFGIDMQAD 184

Query: 475 SPGTHIRNIAATCS------RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                  ++              N         A++ +   + +     +  +     E 
Sbjct: 185 DARPSWSDVLHPEDAGVFAFELRNALCDQRNLRALVRARRHDGQWRWVEMTAVPRYSAEG 244

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
             I L  +   +T     +  R +   +      A      +K+ F+  +S+ELR+PLT 
Sbjct: 245 QFIGLAGSSPDVTERRDIELAREQLLESERTARNAAESMARLKDEFLATLSHELRTPLTT 304

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G++DLL    L    S  S+ +  I++S+     L++D+LDL+++  G ++L    + 
Sbjct: 305 ILGWSDLLLQRLLPDDPS--SKGLSVIASSARAQQRLISDMLDLSSMLLGKVQLEVEALD 362

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L + + E  ++        +  + + +  +    + D  RL Q+F  +LSNA+ F+    
Sbjct: 363 LAEQVREAMRAQEPVADGKDQALTLQAPLQPCMVLGDATRLQQVFWNLLSNAIKFTPAHG 422

Query: 707 TV--ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--------RGVGL 756
            +   ++   D      +V+++G  IP D    +F RF        R             
Sbjct: 423 RIALTIEVDADGEHVNIAVRDSGDGIPADFLPHLFGRFRQADSTTTRLHGGLGLGL---- 478

Query: 757 GLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
             +IV+  + +HGG +S +S   G       R+P 
Sbjct: 479 --AIVQQLVEMHGGQISAASEGRGCGAVFTVRLPL 511



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 13/157 (8%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           ++ E     + L+   + F  L + L   VW  D +G++ + N +Y +    +       
Sbjct: 128 DITERKRVERDLAESEARFSALAEGLPMPVWVLDVSGELRFTNTAYAEFFGIDMQADDAR 187

Query: 237 IGESRKLFKEEI---KKRMISSSALEKNFCETVSTLEH-GNNKSYKIVRVL------NSF 286
              S  L  E+       + ++   ++N    V    H G  +  ++  V          
Sbjct: 188 PSWSDVLHPEDAGVFAFELRNALCDQRNLRALVRARRHDGQWRWVEMTAVPRYSAEGQFI 247

Query: 287 GEAGIAIDVSKE---ITVNDQLTHTYEILHNLTVAIA 320
           G AG + DV++        +QL  +     N   ++A
Sbjct: 248 GLAGSSPDVTERRDIELAREQLLESERTARNAAESMA 284


>gi|70729884|ref|YP_259623.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68344183|gb|AAY91789.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1198

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 169/387 (43%), Gaps = 20/387 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  +   E   N  ++     I+     + V     R+ + N ++     T+   +  
Sbjct: 554 RQVRQREKAEHALNDQLRFMDALINGTPNPIYVRDLKRRLVICNDSYLKSMGTDRQSML- 612

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           GT +  +A   +  +++ D   +F        D    ++G    +   +L Y        
Sbjct: 613 GTDLEQLAVPEAEQFSK-DFQSIFDGGPPLLIDRTVHIRGQEMRIYHWMLPYRNAEGEIQ 671

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LK 595
             +  ++++++  +  + LT+  +   KA+  K +F+  +S+E+R+P++ ++G  +L LK
Sbjct: 672 GIIGGWLDISERQQLLQELTQAKDEADKANRAKTTFLATMSHEIRTPMSAVLGMLELALK 731

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +  G  +      +E   +S+  LL L+ DILD+A +++G + L+     L  L+  V 
Sbjct: 732 RADQGQFD---RPSIEVAYSSAQTLLELIGDILDIARIESGHLSLSPERANLRGLVEPVF 788

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
           +       +  +R+++  D   G   + D  R  QI S ++SNA+ F+ +G   V L   
Sbjct: 789 RVFDGLARQKGLRLELELDSHAGDDVLVDPLRFKQILSNLISNAIKFTQQGGVQVRLATG 848

Query: 714 RDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLH 768
               +    + +VK++G  I  D  + +F  F      H+  R G GLGL I  +   + 
Sbjct: 849 PSEPEYLALLLTVKDSG--IAADDLQQLFKPFSQVLGQHQDARSGTGLGLVICRTLCEMM 906

Query: 769 GGHVSISSSDEGVTTINC-----RIPS 790
           GG +++ S     T +       R+P+
Sbjct: 907 GGTLTLHSQPGLGTEVRVQLRLSRLPA 933



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 7/145 (4%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE--- 229
            +  ++ +       L++ +     L +     ++ RD    ++  N SY K+  T+   
Sbjct: 551 AMRRQVRQREKAEHALNDQLRFMDALINGTPNPIYVRDLKRRLVICNDSYLKSMGTDRQS 610

Query: 230 --GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF- 286
             G   ++      + F ++ +        L  +    +   E          R      
Sbjct: 611 MLGTDLEQLAVPEAEQFSKDFQSIFDGGPPLLIDRTVHIRGQEMRIYHWMLPYRNAEGEI 670

Query: 287 -GEAGIAIDVSKEITVNDQLTHTYE 310
            G  G  +D+S+   +  +LT   +
Sbjct: 671 QGIIGGWLDISERQQLLQELTQAKD 695


>gi|58584388|ref|YP_197961.1| membrane associated signal transduction histidine kinase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58418704|gb|AAW70719.1| Membrane associated signal transduction histidine kinase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 475

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 160/379 (42%), Gaps = 25/379 (6%)

Query: 429 YNTLVKVQGETIDHLSE----GVAVFGPDGRIKLS--------------NPAFRSLWKTE 470
            N LVK++ E +  + E    G+ ++  + RI  S              N     L   +
Sbjct: 86  INQLVKLRAELLQSVGEVKDLGLILYDQNSRIIFSHFNTQDHDYEQLLTNDEIDKLLNNQ 145

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E   + G  + +I      ++        F  II + D+    +          +L   I
Sbjct: 146 EIFYTIGHTLISIFPI---FHENDTKPSFFLKIIQNHDNFYVMVYSLFLTFLGLLLIILI 202

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + +       T + +    +    L +  EAL + +  K  F   V++ELR+PL  IIGF
Sbjct: 203 LVMLYLHFSNTQM-LVKQHKTNIELQQMKEALEQENTNKLKFFASVTHELRTPLNAIIGF 261

Query: 591 TDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +L+K   LGS+++ Q  +YV+ I  + T LL L+ND+LD +  ++  + +      LN 
Sbjct: 262 AELIKNETLGSMDNYQYKEYVDDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNK 321

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++     ++ K+ E  I ++     +    +AD +R+ Q+   +LSN++ F+ K   + 
Sbjct: 322 IIDSCLNMLSPKLKETGISLEKEIPNRQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIR 381

Query: 710 LKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           +      +         +NG  I +     V + F       +  G G+GL + +  + L
Sbjct: 382 MVIKENIEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRNEGTGIGLPLSKKLVEL 441

Query: 768 HGGHVSISSSDEGVTTINC 786
            GG  +I S  +  TTI  
Sbjct: 442 MGGTFNIKSEAKLGTTITL 460


>gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
 gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15]
 gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
 gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
          Length = 918

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    L   Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTELTPTQRDHLNTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  IL   R            +++ G 
Sbjct: 395 KSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|169333792|ref|ZP_02860985.1| hypothetical protein ANASTE_00177 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259357|gb|EDS73323.1| hypothetical protein ANASTE_00177 [Anaerofustis stercorihominis DSM
           17244]
          Length = 541

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 118/250 (47%), Gaps = 11/250 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            + +R L+ + +    A + K++F+  +S+E+R+P+  IIG TD+   +       K   
Sbjct: 143 QKKQRKLSIELQVAETASQEKSNFLSRMSHEIRTPMNGIIGMTDIACMNYDNP--EKSLD 200

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I  SS  LL+L+NDILD++ ++ G ++L   T  L      +    + + H+ ++ 
Sbjct: 201 CLNKIKLSSEYLLSLINDILDMSRIENGKIELYKQTFDLCGFCERLYIMFSQRAHDASLD 260

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFI---FSV 723
             + S+      + D  RL Q+   ILSNA+ F+     + +   +   + +      +V
Sbjct: 261 FNITSNITRPYLIGDELRLNQVVVNILSNALKFTRTNGRIDVDVNQKIIDDEICLLTITV 320

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  + ++    +F  F    +    +  G GLGL+I  + I L  G +++SS     
Sbjct: 321 EDSGIGMSKEFLAKIFEPFEQEVNTTSHQFAGTGLGLAISHNLIKLMNGKINVSSEQGKG 380

Query: 782 TTI--NCRIP 789
           +    +  +P
Sbjct: 381 SKFEISVELP 390


>gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591]
 gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591]
          Length = 922

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    L + Q  Y++ I
Sbjct: 276 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTQLTTTQKDYLQTI 332

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++ND+LD + ++AG + L      L++ L+EV   +A   HE  + + +  
Sbjct: 333 ERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNI 392

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
              +   FV D  RL QI + +L NA+ F+ +G  + ++  +   +         +K+ G
Sbjct: 393 QHDVPEQFVGDPLRLQQIVTNLLGNAIKFTEQG-NIDIRIEKRKQENLQVLLEIQIKDTG 451

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F         Q  G GLGL I +  +   GG +S  S     TT  
Sbjct: 452 IGIAEAQQTQLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFW 511

Query: 786 CR 787
           C 
Sbjct: 512 CT 513


>gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 1205

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 145/314 (46%), Gaps = 5/314 (1%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R I     +   +S+        +   ++E +     L    +  L+ S   L   QT +
Sbjct: 463 RKIQELLEQTRIQSEELQTQQEELRQMNEELEEQTQVLRQQQEE-LKVSNEELEE-QTHI 520

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +   +   A+  + +K + L  + + K+ F+ ++S+ELR+PL +++  +  L  +K  
Sbjct: 521 LEMKNKEVELAKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKRK 580

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+  Q +    I  S   LL L+ND+LDL+ +++G M +N   +VL     E+  +   
Sbjct: 581 NLSEDQVESANIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTFKL 640

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  E  + + +I D  L   +  D  RL QI   ++SNA+ F+ +G   +    ++    
Sbjct: 641 QATEKKLDLDLIFDDDLPEVIRTDSHRLNQILKNLISNALKFTERGKVQVEIKKQNKDKI 700

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           +FSV ++G  IPE+   ++F  F        R   G GLGLSI      L GG + + S 
Sbjct: 701 LFSVIDSGIGIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFLKSK 760

Query: 778 DEGVTTINCRIPSK 791
               +T +  +P +
Sbjct: 761 VNQGSTFSLSLPIE 774


>gi|254517110|ref|ZP_05129168.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3]
 gi|219674615|gb|EED30983.1| multi-sensor hybrid histidine kinase [gamma proteobacterium NOR5-3]
          Length = 1470

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+  +S+E+R+P+  IIG TDLL  +   +LN  Q +Y E    S   LL+++NDILD 
Sbjct: 846  QFLATMSHEIRTPMHGIIGMTDLLLGT---ALNPPQRRYAETAKQSGENLLSIINDILDF 902

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI-RIKVISDGKLGSFVADRQRLLQ 689
            + ++A  ++++  +  +N L++ V Q  +    + N+  +             D +++ Q
Sbjct: 903  SKIEASKIEIDKHSFDINLLIDRVCQLQSVTAEKKNLGLLSYPVTNCSSEIYGDEKKIGQ 962

Query: 690  IFSKILSNAMDFSSKGS---TVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSN 745
              + ++ NA+ F+S+G    T  ++A   +   +  SVK+ G  + E+    VF +F   
Sbjct: 963  CLTNLVGNAIKFTSEGRIQVTATVEAKGQDDWVLELSVKDEGIGMDEETQSRVFEQFTQA 1022

Query: 746  AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 RR  G GLGLSI + FI L  G V + S+ +  TT+  +IP+K
Sbjct: 1023 DASTTRRFGGTGLGLSITKQFIELMNGEVILESAPQAGTTVTIKIPTK 1070


>gi|163801654|ref|ZP_02195552.1| Signal transduction histidine kinase [Vibrio sp. AND4]
 gi|159174571|gb|EDP59373.1| Signal transduction histidine kinase [Vibrio sp. AND4]
          Length = 1240

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 154/376 (40%), Gaps = 26/376 (6%)

Query: 422 QVDLETKYNT-LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH- 479
           + + ET+      K     +D L   + +   + +  L+N  F ++              
Sbjct: 570 RKEYETQIRQKQSKWLSSVLDQLPNKILISDGNNKQILANKPFINMLSRSNADSGITEEE 629

Query: 480 ---IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              I N+   CS   +E     LF+     +   +++L    E                 
Sbjct: 630 REKILNLTRECSSVGSEFAETSLFSFGNKHYRVRKQTLHHPEE--------------ETQ 675

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             M  F +V++  + E AL   N    +A E +  F+  VS+ELR+P+  ++G  +LL+ 
Sbjct: 676 YCMTVFDDVSELKQKETALKVSNLKAMQAIEAREHFLAVVSHELRTPIAAMLGLMELLEQ 735

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                   K  + ++    S+  L   VNDILD + ++A  ++L+     +   L    +
Sbjct: 736 DLEQI---KSRELLKNAMQSAERLQLHVNDILDFSKINANQLQLDVQKGNVYQELGSTLR 792

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           S    + + ++  ++       + V  D  R+ QI + +LSNA+ F+ +G  +I+     
Sbjct: 793 SFEKAIEQKSLSFELSWTPTPHAMVELDWLRVNQIINNLLSNAVKFTERG-KIIVNVHVG 851

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
                  V++ G  +      ++F  FV       RR  G GLG+SIV+S +++  G + 
Sbjct: 852 PNQLELGVQDTGCGMNTAQLATLFQPFVQGDKSISRRFGGTGLGMSIVKSLVDIMDGSIE 911

Query: 774 ISSSDEGVTTINCRIP 789
           + S     TTI   +P
Sbjct: 912 VESQKTRGTTITITLP 927


>gi|260436759|ref|ZP_05790729.1| drug sensory protein A [Synechococcus sp. WH 8109]
 gi|260414633|gb|EEX07929.1| drug sensory protein A [Synechococcus sp. WH 8109]
          Length = 688

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 147/391 (37%), Gaps = 41/391 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +   DGRI L+NP  R L++ E   L     +  +   
Sbjct: 290 EELTAAQVKQQSLIATMADGAMLLDADGRIVLANPTARRLFRWEGRSLEGQELVGELPEL 349

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +   +     D         +D R S+      L    +    +   + +T+       
Sbjct: 350 LAIELHSP--LDSLLGSAADSEDLRCSVGEPARTLR---IVLQAVRDASGETLKGIAVTI 404

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L          +Q
Sbjct: 405 QDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDLGDQLSPDEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++   +  +  L  LVN++LDL+ +++G   L    I +   + +  ++      +  
Sbjct: 455 KEFLGVANDETDRLTRLVNNVLDLSRLESGR-TLQLEPISMRPAMEQTLRTYRLNAEDRQ 513

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------- 717
           + + +  + +L   + +   LLQ+   ++ NA+ FS  G  + L+A              
Sbjct: 514 VELVLDVNEELPEVLGNWDLLLQVLDNLVGNALKFSRPGGPLALRAYPWPDACSVEGTAI 573

Query: 718 ---------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIV 761
                               + + G  I     + +F+RF    +      G GLGLSIV
Sbjct: 574 TSSDGPTCALTSPLPKLRVEIADTGCGISSADQERIFDRFFRVENAVHTEVGTGLGLSIV 633

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +  HG  V ++S  E  TT    +P  E
Sbjct: 634 RGILEKHGAQVQMASEPEVGTTFWFDLPLAE 664



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 55/185 (29%), Gaps = 17/185 (9%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            S    NF   V     G     +++   N+      A D +    +         ++  
Sbjct: 248 RSVASGNFGARVDLPVGGE--LGELLTGFNAMASQLEAYDEANIEELTAAQVKQQSLIAT 305

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ------ 368
           +     + D +  +   N +   L+  +   L       EL E L      P        
Sbjct: 306 MADGAMLLDADGRIVLANPTARRLFRWEGRSLEGQELVGELPELLAIELHSPLDSLLGSA 365

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            + +  + ++    ++           +G+TL          G     ++LT +V+L   
Sbjct: 366 ADSEDLRCSVGEPARTLRIVLQAVRDASGETLK---------GIAVTIQDLTREVELNAA 416

Query: 429 YNTLV 433
            +  +
Sbjct: 417 QSRFI 421


>gi|209524475|ref|ZP_03273023.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209494933|gb|EDZ95240.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 351

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 131/293 (44%), Gaps = 28/293 (9%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E  I+    ++ +    ++T S  A+  L    +A   A+  ++ F+  +S+ELR+PL 
Sbjct: 49  FEARIVVSGESEVLAIIRDITQSKLAQIELQRAKDAAESANHAQSEFLASMSHELRTPLN 108

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG+++LL+   +    +     ++ I AS   LL ++ DILD++ +++G+M +     
Sbjct: 109 AIIGYSELLREDAVDFGYTDFIPDLDQIRASGLHLLTIIQDILDISKLESGMMTVCLENF 168

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +  L+ E++  +     +N+ ++KV     +    ADR ++ Q+   +LSNA  F+  G
Sbjct: 169 NIATLIKEIEALVQPLFPKNHNQLKVNCTPDVEGMYADRIKVKQVLLNLLSNAAKFTENG 228

Query: 706 -------------------------STVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVF 739
                                    S+V++       G   F V + G  +  +    +F
Sbjct: 229 LVNLNVIYIGQLDTKISAYLRENLASSVLVNDEHQLQGGVAFEVIDTGIGLTTEQMTKIF 288

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             F    +   RR  G GLGLSI + F  L GG ++++S     +T     P 
Sbjct: 289 EPFERADNSTTRRYEGTGLGLSISKRFCELMGGAITVASEIGEGSTFTAYFPL 341


>gi|254419545|ref|ZP_05033269.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196185722|gb|EDX80698.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 523

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 131/273 (47%), Gaps = 11/273 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            LE+      + +      +VT  V AE+AL E   A   A   K+ F+ ++S+E+R+PL
Sbjct: 105 TLEWRAQRFGD-RIYAVARDVTAKVAAEKALIEAKAAAEAASRAKSDFLANMSHEVRTPL 163

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             +IG  D L  +   +L+  Q++ V  I AS   L  LV+DILD++ ++AG + L    
Sbjct: 164 NGVIGIVDALSRT---ALDPAQTEMVNLIRASGVTLERLVSDILDVSKIEAGELTLETRP 220

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSS 703
             L++ L+     +  +  E  +R  VI D +  G FV D  R+ Q+   +LSNA+ F+ 
Sbjct: 221 FDLDEALDAPLDVMRVRADEKGLRFDVIRDDEARGVFVGDSTRIRQVIGNLLSNAVKFTH 280

Query: 704 KGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
           +G   V +    D+      I  +++ G     +    +F+RF        RR  G GLG
Sbjct: 281 QGGVSVRIALDEDHDSLTHLIVDIQDTGVGFNAEHAPRLFDRFSQADATITRRFGGTGLG 340

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LSI  + + + GG ++  S+    +     IP 
Sbjct: 341 LSICRALVEMMGGRITAESTPGQGSRFRIEIPL 373


>gi|119509715|ref|ZP_01628860.1| Multi-sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
 gi|119465581|gb|EAW46473.1| Multi-sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
          Length = 648

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 159/394 (40%), Gaps = 30/394 (7%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   ++ L    ++G  +     ++ L NP  R
Sbjct: 247 GEVILSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNSMQVILVNPTAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++   E     G+++ +   +  +       +++ A    S   E +         +  
Sbjct: 307 RIFG-WEGIQVEGSNVLHHLPSAVQMEITHPLYEMAAGECESA--EFRIHLNEPTKRTVR 363

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +L  +++ L         + V D  R             + +E K+ F+ +VS+ELR+PL
Sbjct: 364 ILLTTVLNLQRESIKGIAITVQDITR-----------EVELNEAKSQFISNVSHELRTPL 412

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  F + L          ++  +++ ++  +  L  LVND+LDL+ +++G    N+  
Sbjct: 413 FNIKSFIETLHEYGEDLSLEQRQDFLQTVNNETDRLTRLVNDVLDLSKLESGR-SYNFGG 471

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L   + +  ++      +  I +       L   + +   LLQ+ + ++ N++ FS  
Sbjct: 472 VDLAQAIEQTLRTYQLNARDKGITLIQEVPLDLPLVLGNYDLLLQVLANLVGNSLKFSHS 531

Query: 705 GSTVILKAAR---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGV 754
           G  V ++A +                 + + G  I  +  +++F+RF    +R     G 
Sbjct: 532 GGQVAIRAYQLDTKPNSHNQQAHVRVEISDTGIGIAPEDQQAIFDRFFRVENRVHTLEGT 591

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGLSIV + +  H   + + S     TT    +
Sbjct: 592 GLGLSIVRNIMERHRSQMHLVSEVGVGTTFWFDL 625


>gi|206601972|gb|EDZ38454.1| Putative multi-sensor hybrid histidine kinase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 849

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA   A++ K+ F+ ++S+ELR+PL  I+G ++LL+       + +Q++ +  + 
Sbjct: 184 LEKLIEAANAANQSKSRFLANMSHELRTPLNGIMGLSELLREQA----SPRQNELLNTLQ 239

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L +++  ILD + ++AG M ++  T  +  ++ E   ++     + N+ + V+ D
Sbjct: 240 GSARHLSDIIGKILDFSRLEAGRMTVSLVTFDVGQVVAETVSALLPLARQKNLPLTVLMD 299

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSVKNNGS 728
            +   S   D   L QI + +L NA+ F+  G  V     IL +        F V + G 
Sbjct: 300 ARFPSSLRGDPFHLKQILTNLLGNAIKFTESGEVVLTITPILTSDERQLSVRFEVSDTGI 359

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F  F         +  G GLGL+I    ++L  G +   S     +   C
Sbjct: 360 GISEEEKNRIFESFSQGDDSVTKRYGGTGLGLAITRQLVDLEKGKLGFLSHAGKGSIFWC 419

Query: 787 RIP 789
            IP
Sbjct: 420 TIP 422


>gi|323691353|ref|ZP_08105628.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum
           WAL-14673]
 gi|323504693|gb|EGB20480.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum
           WAL-14673]
          Length = 748

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 114/244 (46%), Gaps = 11/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            +    E    A+  K+ F+ ++S+++R+P+  IIG T + + +       +    ++ I
Sbjct: 345 EIIRAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMTRIARENIGDG--ERVEDCLKKI 402

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672
             SS +LL ++ND+LD++ ++A  ++L      +  +++  +  +  +     + ++   
Sbjct: 403 DISSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDSNRMIMERQAENKQLTLEFKK 462

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNN 726
           ++    + V D  RL QI   ILSNA+  + +G  +  +         D+G + F + + 
Sbjct: 463 TNLNHDAVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEIIELPCTREDSGRYRFVISDT 522

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  + E+  K +F  F       R + +G GLG++I +  + L GG V + S     T  
Sbjct: 523 GVGMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMGGTVEVESRQGEGTVF 582

Query: 785 NCRI 788
              +
Sbjct: 583 RVEL 586


>gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gi|300073351|gb|ADJ62750.1| Hpt sensor hybrid histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 723

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 125/249 (50%), Gaps = 10/249 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           ++ R    L +  EA   A   + +F+  +S+E+R+P+  ++G   LL++++   L+++Q
Sbjct: 65  ENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTR---LDTQQ 121

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +++ + I  S+  LL +VND+LD + +D G M +      L  ++    ++++ K  E  
Sbjct: 122 AEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKAREKR 181

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIF 721
           +R+    D +L    V D  R+ QI   +L NA+ F+  G  ++    L+   D+    F
Sbjct: 182 VRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTSDHCRVRF 241

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V+++G  + ED  + +F+ F         Q  G GLGLSI +  + L GG + + S+  
Sbjct: 242 EVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALG 301

Query: 780 GVTTINCRI 788
             +     +
Sbjct: 302 TGSCFWFEL 310


>gi|153214295|ref|ZP_01949312.1| sensor histidine kinase [Vibrio cholerae 1587]
 gi|124115443|gb|EAY34263.1| sensor histidine kinase [Vibrio cholerae 1587]
          Length = 736

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 172/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 149 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 204

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 205 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 262

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 263 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 322

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K+ F+  +S+E+R+P+  ++G   +L
Sbjct: 323 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSVFLATLSHEIRTPMNGVLGTAQIL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L  KQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 383 LKDE---LTPKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 498

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +    R
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR 578


>gi|91224745|ref|ZP_01260005.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|269964372|ref|ZP_06178614.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|91190291|gb|EAS76560.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|269830869|gb|EEZ85086.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 785

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 134/305 (43%), Gaps = 7/305 (2%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                      +   + S +    ++  +    +   +  +++ L +A    +   + + 
Sbjct: 190 ELLTNELLDHTYIEFVESSEHRLLNIAQSEARFTWLFVFIAVMFLVSAFVYQSHHRMHNL 249

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +    + E      +A + K++F+  +S+ELR+P+  ++G + ++             +
Sbjct: 250 KQLNLEIEEARNKAERAAKAKSNFLAAMSHELRTPMNGVLGLSQMIAEETKEPTT---KE 306

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++  I  S   L+ ++NDILD + V+   ++   +   L+ +L+ V  +I   + E NI 
Sbjct: 307 HIRVILDSGQHLMTILNDILDFSKVEENKLEFEQAKFKLDQVLSPVCSAIKPLVDEKNIE 366

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNN 726
           + + ++  +   F  D  RL QI   +  NA+ F+++G   V  +    N   +  V + 
Sbjct: 367 LILENEVSEYTEFTGDCARLRQILFNLAGNAVKFTNEGHVLVRTELDESNQLLVMRVSDT 426

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D  + +FN F        RR  G GLGL+IV+   +L GGH+++ S +   +  
Sbjct: 427 GIGIAPDKHEHIFNSFEQADSSTTRRFGGTGLGLAIVKKLTDLMGGHITLKSIEGVGSQF 486

Query: 785 NCRIP 789
              +P
Sbjct: 487 IVELP 491


>gi|170748167|ref|YP_001754427.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654689|gb|ACB23744.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 511

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 4/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK- 605
           +  +A+    E      +A+  K+ F+  +S+ELR+PL  I+GF++++K    G+  +  
Sbjct: 236 ELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGTHTAPS 295

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ E +  +  +    
Sbjct: 296 YREYSHDIHDSGMHLLNLINEILDLSRIEAGRYELNEEPVQLAHVVEECRHMMGLRAKAK 355

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVK 724
           N     + DG L    AD + L QI   +LSNA+ F+  G  + LK     +G    SVK
Sbjct: 356 NQTFHDLVDGSLPRLWADERALRQIVLNLLSNAVKFTPPGGEIWLKVGWTASGGQYVSVK 415

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  IPED   +V + F   +   +   +G GLGL IV+  + LHGG   +SS     T
Sbjct: 416 DSGPGIPEDELGTVLSSFGRGSLAIKTAEQGSGLGLPIVKGLVELHGGQFQLSSKPREGT 475

Query: 783 TINCRIPS 790
            +   +P+
Sbjct: 476 EVVVTLPA 483


>gi|111225753|ref|YP_716547.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
 gi|111153285|emb|CAJ65037.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
          Length = 1371

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 138/296 (46%), Gaps = 18/296 (6%)

Query: 512  KSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +S + T EL S SV L+ +   L     +L   N  +   A   L EK E L  + + K 
Sbjct: 767  QSQRLTQELRSQSVELQRTNNELEEKAALLEDKNH-EIELARIGLEEKAEQLALSSQYKT 825

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+ ++S+ELR+PL +++    LL  +   +L+ KQ  + E I ++ + LL L+NDILDL
Sbjct: 826  EFLANMSHELRTPLNSLLILAKLLADNPDRNLSRKQIDFAETIHSAGSELLGLINDILDL 885

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
            + V+AG M ++ +++    L + V         E  +  +V     +   F+ D QRL Q
Sbjct: 886  SKVEAGKMDVDATSVRTAALCDAVAGVFGPVADEKGLAFEVNLAADVPAEFITDEQRLQQ 945

Query: 690  IFSKILSNAMDFSSKGST---VIL----------KAARDNGDFIFSVKNNGSSIPEDMCK 736
            +   +LSN++ F+  G+    V L                    F+V + G  I  +  +
Sbjct: 946  VLKNLLSNSVKFTDSGTVRLDVTLARPDLPHLASHLRSAGTVLSFAVSDTGIGIAAEKLR 1005

Query: 737  SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F  F         +  G GLGLSI +    L GG +++SS+    +T    +P+
Sbjct: 1006 MIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSSAVGHGSTFTLYLPA 1061


>gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 870

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 121/249 (48%), Gaps = 11/249 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E +L +  +A  +A   K+ FV ++S+ELR+P+T ++G  DL   S      +++
Sbjct: 473 ERNLMEESLRQAKQAAEEASRTKSRFVANMSHELRTPMTGVLGMLDLALQSC---DETER 529

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y+E    S+  LL ++ND+LDLA V+AG   L+     L   + +    +  ++    
Sbjct: 530 TDYIETAQRSARSLLRILNDVLDLAKVEAGKFSLDSKPFSLRTCIGQAVDVVMPEVRRKG 589

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA----RDNGDFI 720
           + + +  +  L    + D+ RL Q+ + ++ NA+ F+ +GS  + L+A     +   +F 
Sbjct: 590 LELALQIEDHLPDHVLGDQVRLRQVLTNLIGNAVKFTERGSVRIALRAGGRSPQGPMEFR 649

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           FSV++ G  IP+D    +F  F            G GLGL+I +  +   GG +++    
Sbjct: 650 FSVRDTGIGIPQDKRHLLFVSFSQLDDSNTRSYGGTGLGLAISKEIVERMGGSIALEGEK 709

Query: 779 EGVTTINCR 787
              +  +  
Sbjct: 710 GEGSCFSFT 718


>gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 948

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQI 405

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 406 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 448

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 449 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 503

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 504 VDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRK 563

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V+
Sbjct: 564 QLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVR 622

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 683 QFTLRIPL 690


>gi|257454753|ref|ZP_05620007.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus
           SK60]
 gi|257447873|gb|EEV22862.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus
           SK60]
          Length = 1101

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 138/320 (43%), Gaps = 23/320 (7%)

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           +   ++  +L+  +  +   E   LQ  L + +   L  S   L N              
Sbjct: 263 HLQRTNANNLYKPMTINASGEINQLQQDL-VKTLRRLHKSFQELKNHAEQTEDDLRLAFD 321

Query: 550 RAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             E     +    +A   A + K++F+ ++S+ELR+PL +I GF +LL  S+ G LN++Q
Sbjct: 322 EMEMQNISIRNARDAAVSASQTKSAFLANISHELRTPLNSIDGFINLL--SRHGGLNAEQ 379

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             YV+ I  SS  LL LVND+LD + ++AG + L+     L   + +V   ++    E +
Sbjct: 380 DLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDSHEFDLYASIYDVVDMLSPLAAEKD 439

Query: 667 IRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSV 723
           +R+ V   D      V D  R  Q+ + +++NA+ F+  G  ++  +     +     SV
Sbjct: 440 LRLAVFFYDDVPHYLVGDALRTKQVLTNLVNNAIKFTDDGEVIVRVSLDDDIDDLIHISV 499

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI------- 774
           ++ G  I  +  K +F  F         Q  G GLGL I +    L GG++         
Sbjct: 500 QDTGRGISPEHQKVLFQSFSQGDPSITRQYGGTGLGLVISKQLTYLMGGNIGFYDNATEQ 559

Query: 775 -----SSSDEGVTTINCRIP 789
                 S     TT    +P
Sbjct: 560 AGDASQSHKIKGTTFWFTLP 579


>gi|165870245|ref|ZP_02214901.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167633043|ref|ZP_02391369.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167638329|ref|ZP_02396606.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170686406|ref|ZP_02877627.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170706128|ref|ZP_02896590.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177650820|ref|ZP_02933717.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190566443|ref|ZP_03019361.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|218903127|ref|YP_002450961.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227815204|ref|YP_002815213.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229599899|ref|YP_002866374.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254734874|ref|ZP_05192586.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|164714133|gb|EDR19654.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167513630|gb|EDR88999.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167531855|gb|EDR94520.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129130|gb|EDS97995.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170669482|gb|EDT20224.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172083281|gb|EDT68342.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190562578|gb|EDV16545.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|218537300|gb|ACK89698.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227005627|gb|ACP15370.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229264307|gb|ACQ45944.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 459

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 221 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 279

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 280 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 339

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++
Sbjct: 340 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDD 397

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 398 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 455

Query: 787 RIPS 790
           ++P 
Sbjct: 456 KLPL 459


>gi|88859263|ref|ZP_01133903.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
 gi|88818280|gb|EAR28095.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
          Length = 884

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 133/251 (52%), Gaps = 12/251 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            S +  + L +  E   +A E K+ F+ ++S+E+R+P+  I G  DL   ++   L  +Q
Sbjct: 359 QSNQLNQDLLKATEKAEQATEFKSIFLANMSHEIRTPINGISGLIDLCLATE---LTHRQ 415

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +++  + S+ +L++LVNDILD + ++AG + + Y    L  +++ +  +IA + +E N
Sbjct: 416 RDFLDKAAYSTNLLMSLVNDILDFSKIEAGKLSIEYIQFSLEAIIDNLIANIAPRSYEKN 475

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG---DF 719
           + +       L   F+ D  R+ QI   + +NA+ F+S GS   TV+ +A  +N      
Sbjct: 476 LHLNCEIAPNLPRLFMGDPLRVNQILFNLCTNAVKFTSIGSITITVLFEAIPNNDKQIKL 535

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           I SV + G  + E    ++FN F+        +  G GLGLSIV+  + L GG +S++S+
Sbjct: 536 ILSVSDTGVGLTEQQIDNIFNAFIQADGSISRKYGGTGLGLSIVKQLVKLMGGEISVNST 595

Query: 778 DEGVTTINCRI 788
            +  ++    +
Sbjct: 596 PDVGSSFCVEL 606


>gi|269960019|ref|ZP_06174396.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835318|gb|EEZ89400.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 787

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 142/336 (42%), Gaps = 8/336 (2%)

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L+N A     +  +N       +R          N+      F  +  S     +  Q  
Sbjct: 160 LTNTALEGDNEQSQNIALFLGRLRESERKIELLTNKILESHYFEFVEYSEHQLLEIAQRE 219

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             L    VL  SII L     + T   V    +    LTE  E   +A + K+ F+  +S
Sbjct: 220 GRLTWVFVL-LSIISLVAIFVLQTQHRVNKLKQLNDDLTEATEKAERAAKAKSQFLATMS 278

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+  ++G + ++ +    +   +  ++V+ I  S   L+ ++NDILD + V+   
Sbjct: 279 HELRTPMNGVLGISQIIASE---TKERETKEHVQVILDSGQHLMTILNDILDFSKVEENK 335

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILS 696
           ++L  +   L  +L  V  +I   + E NI++ V ++  +   F  D  R+ QI   +  
Sbjct: 336 LELEAAPFNLPQVLTPVCSAIQPLIEEKNIKLYVENEVPENIEFNGDCARIRQILFNLAG 395

Query: 697 NAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
           NA+ F+S G   +  +        + S+ + G  IP D    +FN F        R   G
Sbjct: 396 NAVKFTSDGHVLIRAELDEPRKRLLLSINDTGIGIPADKQDRIFNSFEQADTSTTRKFGG 455

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+IV+    L GG V + S +   T     +P
Sbjct: 456 TGLGLAIVKKLTELMGGEVKLKSVESIGTQFLVELP 491


>gi|91786469|ref|YP_547421.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91695694|gb|ABE42523.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1127

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 6/261 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q  L    +    R + AL    E    A++ K  +V  +++ELR+PL +I+G++ +L
Sbjct: 641 NRQNQLLSREIEAHQRTDAALQTAKELAEAANQAKTRYVAGMTHELRTPLNSILGYSQIL 700

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S+  +      + V+ I  S   LL LV+ +LDLA ++AG ++L  + + L D L+ +
Sbjct: 701 LKSEALANTP--REAVQTIQRSGEHLLALVDGLLDLARIEAGRLRLEPTPLPLPDFLDGL 758

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +  +    ++       G++ ++V AD +RL QI   +LSNA+ F+  GS V L   
Sbjct: 759 VNMVRPQAEAKDVDFIYTHSGRMPAWVQADAKRLRQIIINLLSNAVHFTDTGS-VTLHVD 817

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V + G  I     + +F  F   A   +R   G GLGL+I      L GG 
Sbjct: 818 CRREVIRFDVVDTGIGIAPQDQQRIFLPFERGAAGRRRGEPGTGLGLTITGLLTALMGGD 877

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +S+ S     +T + R+  +E
Sbjct: 878 LSLQSEQGKGSTFSVRLYLRE 898


>gi|310828980|ref|YP_003961337.1| hypothetical protein ELI_3415 [Eubacterium limosum KIST612]
 gi|308740714|gb|ADO38374.1| hypothetical protein ELI_3415 [Eubacterium limosum KIST612]
          Length = 1195

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 122/577 (21%), Positives = 219/577 (37%), Gaps = 58/577 (10%)

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIV--RVLNSFGEA---GIAIDVSKEITVNDQLTHT 308
                     E       G+ K   +   R+    G     G+ +D+++E  V  ++   
Sbjct: 338 DRDLGGTIQDEHRLVCRDGSVKWVSLKAQRLTEDDGNQYFYGVFVDITEEKQVQTRVREL 397

Query: 309 YE-----ILHNLTVAIAIFDQNRYLQF---HNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           YE      + + +   A       L     +  S+     +  A      S    +E L 
Sbjct: 398 YEKEMAYFVQSAS---AEGSNQGRLNITLDYVESYQSTAGL--ALFRRGESYGAAVEQLA 452

Query: 361 SANKLPEQLNW------KTWKENIFSVYKSSETHKDTWHLPNGQTL----HVIVTSNPRG 410
            +   PE  ++      +T   N FS  K+           NG          + +NP  
Sbjct: 453 ESAVDPEYGHYIRTVLNRTCVLNDFSNGKADYRFDFLRKKKNGSVFLCSTSFRLHTNPES 512

Query: 411 GTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           G +  F    ++T Q  LE     +  +  + I  +     +     R+ +     R   
Sbjct: 513 GDVIAFFYTLDVTEQRMLERMLERVSSLDYDVITEID----LTSGTYRLAVC---GREWN 565

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWD-LFAAIITSFDDERKSLQGTLELLSD--- 523
            T     +    IR +A  C     + +  + L  A +      + S    LEL  +   
Sbjct: 566 PTIPLEGNFQEEIRRVAERCMDEAEQREFLEKLDPAYMRRELARQSSYTFVLELQQNGGR 625

Query: 524 SVLEYSIIPLPN--AQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVS 577
            V  + I  +     +  +T  +VT+ VR E+     L     A  +A+  K  F+  +S
Sbjct: 626 RVKRFQIFYIGEELGRVCMTRADVTNIVRQEQQQKEALAAALAAAEQANAAKTDFLSRMS 685

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+P+  IIG +  +    LG  + + ++ +  I  SS  LL+L+NDILD++ +++  
Sbjct: 686 HEIRTPMNAIIGMS-AIAAQALGD-DERVAECISKIGISSRFLLSLINDILDMSRIESRK 743

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILS 696
           M L    I   D +N +     ++     +  + I D  L  F + D  +L Q+   ILS
Sbjct: 744 MLLKNEKIPTEDFINGLNAICYSQAATKGVEYECIVDPTLDDFYIGDAMKLQQVLLNILS 803

Query: 697 NAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRG 749
           NA+ F+ +G  V   AA     ++     F V + G  I +     +F  F   +     
Sbjct: 804 NAIKFTGEGGKVTFSAALHRKSKNGATLRFIVNDTGVGISDSFLIHLFEPFSQESIGTTA 863

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           Q  G GLGLSI ++ I++ GG +++ S     +    
Sbjct: 864 QYGGSGLGLSISKNIIDMMGGKITVRSIKGIGSEFTV 900


>gi|125987876|dbj|BAF47077.1| CnNIK1 [Cryptococcus neoformans var. neoformans]
          Length = 1383

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 14/242 (5%)

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            T+  +    A+  K+ F+ ++S+E+R+P+  IIG T L   S+   L  +Q + +  +S+
Sbjct: 817  TKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESE---LTRQQRENLMIVSS 873

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             +  LL +++DILD++ ++AG M +      L   +  V +++  K  +N + +    D 
Sbjct: 874  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 933

Query: 676  KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNG 727
             +    + D  RL Q+ + ++ NA+ F++KG  V L           D  +  F V + G
Sbjct: 934  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKG-QVALSCRVKRYVTVADAVELEFCVADTG 992

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              I +D    +F+ F        R   G GLGL+I +  +NL  G + + S     +   
Sbjct: 993  IGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESEYGQGSRFY 1052

Query: 786  CR 787
              
Sbjct: 1053 FT 1054


>gi|332532320|ref|ZP_08408200.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038187|gb|EGI74633.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 522

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 113/238 (47%), Gaps = 12/238 (5%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E        K+ F+ ++S+E+R+P++ IIG T++L       L  +   Y++ I  
Sbjct: 1   MHAKEEAEHLTSAKSEFLANMSHEIRTPMSGIIGLTNILLEK---GLPDEYEHYLDKIKY 57

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL ++NDILD + +++G + L      +N +++ +K +         +   +  D 
Sbjct: 58  SSDQLLVVINDILDFSKIESGNVNLEEFPFSVNSVVDYIKATFNELAQSKGVTFDISIDE 117

Query: 676 KL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-----FIFSVKNNGS 728
            +    + D  R+ Q+   + SNA+ F+  G+  V++++ +   D       F+VK++G 
Sbjct: 118 AVKLDLIGDVVRINQVLLNLCSNAIKFTPHGTVSVLIESRKLLDDPQSVCLYFTVKDSGI 177

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            I ED   ++F  F        R   G GLGL+I +    L GG +++ S+    +  
Sbjct: 178 GIAEDNLSNLFESFTQADSSTTRKFGGTGLGLTISKRLCQLMGGDITVHSTQGVGSEF 235


>gi|317488286|ref|ZP_07946852.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325830707|ref|ZP_08164091.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|316912626|gb|EFV34169.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325487114|gb|EGC89557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 762

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 118/257 (45%), Gaps = 20/257 (7%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  RAERA    +E  R+A   K+ F+  +S+E+R+P+  I+G T +   +       K 
Sbjct: 347 EKNRAERA----SEEARRASLAKSEFLSRMSHEIRTPMNGIMGMTAIALENAHD--EEKA 400

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +E I  +S  L+ L+NDILD++ +++G + +   T      +  +     T+  E  
Sbjct: 401 RACLEKIDVTSEHLMALINDILDMSKIESGKIDIKRETFDFGTFVGSLDDVFGTQALEQG 460

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----------- 714
           IR K    G L S  V D  RL QI   ++ NA  F+ +  +V L+              
Sbjct: 461 IRYKTEEVGALPSLLVGDGLRLNQIVYNLVGNAFKFTPRDGSVTLRIEELPAPPEEDAAH 520

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHV 772
            D     FSV + G  I  +  + +F+ F        +R G GLGL+I + F  + GG +
Sbjct: 521 DDAIWLRFSVTDTGCGIKPENRERIFSSFEQGDESSCRRGGTGLGLAITKRFTEMMGGRI 580

Query: 773 SISSSDEGVTTINCRIP 789
           S+SS     +T    +P
Sbjct: 581 SLSSEVGKGSTFTVDVP 597


>gi|224540763|ref|ZP_03681302.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517630|gb|EEF86735.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 630

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 128/249 (51%), Gaps = 6/249 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                S + ++ L    E   ++D +K++F+ ++S+E+R+PL  I+GF+ +L  +   + 
Sbjct: 383 FYYIHSQKHKKELILAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAET---AD 439

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  +Y+  I  ++ +LL L+NDILDL+ ++AG++   Y+ + +N  + +++ +   +M
Sbjct: 440 TPESHEYIRIIEDNNCLLLQLINDILDLSRIEAGLLDFCYTEVDINGCIRKLEDAFHFRM 499

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              N+        K      ++ RL Q+    LSNA+ ++++GS  +      +G+  F 
Sbjct: 500 PA-NVECIAEFGMKKCHVYTEKNRLGQVLGNYLSNAIKYTTEGSITVGYYPPKDGNMRFY 558

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G  I  +  K++F RFV   +   ++G GLGLSI +         V +SS     +
Sbjct: 559 VRDTGCGISPEKQKAIFQRFVKLDNF--KQGTGLGLSICQMIAEKMHATVGVSSEIGKGS 616

Query: 783 TINCRIPSK 791
                IP +
Sbjct: 617 EFWIEIPYQ 625


>gi|153800379|ref|ZP_01954965.1| sensor histidine kinase [Vibrio cholerae MZO-3]
 gi|124124005|gb|EAY42748.1| sensor histidine kinase [Vibrio cholerae MZO-3]
          Length = 736

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 174/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 149 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 204

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 205 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 262

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 263 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 322

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 323 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 383 LKDE---LTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 498

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +    R
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR 578


>gi|90415638|ref|ZP_01223572.1| sensor histidine kinase with a response regulator receiver domain
           [marine gamma proteobacterium HTCC2207]
 gi|90332961|gb|EAS48131.1| sensor histidine kinase with a response regulator receiver domain
           [marine gamma proteobacterium HTCC2207]
          Length = 1142

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 128/254 (50%), Gaps = 5/254 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R +  L +  E    A+  K+ +++ +S+ELR+PL +++G+  LL+ 
Sbjct: 657 QTQLLINEIKAHERTDLELQQSKEKADAANIAKSRYLERISHELRTPLNSVMGYAQLLEG 716

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L   + + ++ + +SS  L +L+  ++D++ ++AG + L+ + + +  ++ ++  
Sbjct: 717 ADDIPLP--RRESIKVMRSSSEHLTDLIEGLVDISKIEAGRLDLHRNKVDMLAMIEQLMY 774

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +    NI +      +L  +  AD +RL Q+   ++SNA+ F+ +GS V +     
Sbjct: 775 MFQIQAQSKNISLNFSHQERLPETVFADGKRLRQVMINLISNAIKFTPEGS-VSVDLKYR 833

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSI 774
           N    FSV + G  I ++    +   FV  A+   Q  G GLGL+I ++ ++  GG +SI
Sbjct: 834 NQVAYFSVTDTGVGIEDEDISRISEAFVRIANPMHQVAGSGLGLAITQALVHRMGGDLSI 893

Query: 775 SSSDEGVTTINCRI 788
            S     +T    +
Sbjct: 894 ESRFGEGSTFTVSL 907


>gi|92114785|ref|YP_574713.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
 gi|91797875|gb|ABE60014.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
          Length = 737

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 147/320 (45%), Gaps = 15/320 (4%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-- 539
            ++A   R    S   +     + ++  + K+ +  ++L   + L   I+ +  A  +  
Sbjct: 140 RLSALDERLQALSGLSERLVVAVNAYLAQAKTREREVQLTLYATLLALILLMCGATVLVI 199

Query: 540 -LTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFT 591
              F    D++ A +AL   ++ L+         ++ K+ F+  VS+E+R+PL  ++G T
Sbjct: 200 RFLFQEAGDNIAARQALEHLSQELKDTAREAESANQAKSDFLATVSHEIRTPLNGVLGMT 259

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL+  +L   +    QYVE I  S + LL L++D+LD + ++AG +++   T  L  L+
Sbjct: 260 ELLRERELDGTS---HQYVETIHESGSQLLTLISDLLDFSKIEAGHLEIERETFSLQALI 316

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           + + + +  +     + I  ++       + D  RL Q+   +LSNA+ F+S+GS  ++ 
Sbjct: 317 DSLLRLLEPRAQHVEL-ISDVAPSVPSHSLGDAGRLRQVLLNLLSNALKFTSRGSVTLIV 375

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGG 770
                    F V++ G  I +   + +F  F   A       G GLGL+I +  +    G
Sbjct: 376 KPMRGDWMHFEVRDTGCGIEDADPQRLFQPFYQGASAVHYQGGTGLGLAISKRLVEAMQG 435

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + +SS     +     +P 
Sbjct: 436 RIGVSSPAGEGSRFWFELPL 455


>gi|321253934|ref|XP_003192904.1| protein-histidine kinase [Cryptococcus gattii WM276]
 gi|317459373|gb|ADV21117.1| protein-histidine kinase, putative [Cryptococcus gattii WM276]
          Length = 1390

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 14/242 (5%)

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            T+  +    A+  K+ F+ ++S+E+R+P+  IIG T L   S+   L  +Q + +  +S+
Sbjct: 824  TKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESE---LTRQQRENLMIVSS 880

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             +  LL +++DILD++ ++AG M +      L   +  V +++  K  +N + +    D 
Sbjct: 881  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 940

Query: 676  KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGDFIFSVKNNG 727
             +    + D  RL Q+ + ++ NA+ F++KG  V L           D  +  F V + G
Sbjct: 941  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKG-QVALSCRVKRYVTVADAVELEFCVADTG 999

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              I +D    +F+ F        R   G GLGL+I +  +NL  G + + S     +   
Sbjct: 1000 IGIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESEYGQGSRFY 1059

Query: 786  CR 787
              
Sbjct: 1060 FT 1061


>gi|160934183|ref|ZP_02081570.1| hypothetical protein CLOLEP_03051 [Clostridium leptum DSM 753]
 gi|156866856|gb|EDO60228.1| hypothetical protein CLOLEP_03051 [Clostridium leptum DSM 753]
          Length = 1281

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                      K  F+  +S+E+R+P+  I G T + KTS       K    +  I  S+ 
Sbjct: 895  KAHADAVSLAKTQFLSRMSHEIRTPMNAIAGMTTIAKTSL--DHREKVLDCLNKIERSNQ 952

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKL 677
             LL L+NDIL+++ +++G ++++   + +  +  ++ +  A++    NI +       + 
Sbjct: 953  YLLGLINDILEVSRIESGKIEISPEWVDMVTVERQLNEMFASQAKAKNITLLFQRQYEEK 1012

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPE 732
              F  D  R  QIF  ++ NA+ F+  G TVI +A  ++         FS+++ G  I  
Sbjct: 1013 YVFYLDTLRFNQIFINLIGNAIKFTRPGGTVIGRARLESFEKDIAYIRFSIEDTGIGIAP 1072

Query: 733  DMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +  + +F+ F   + +   +  G GLGL+I    + L GG + + S     +     +P 
Sbjct: 1073 EAIERIFDSFEQGSAKTAQEYGGTGLGLTISSHLVQLMGGKLEVKSRLGEGSEFYFTLPL 1132

Query: 791  K 791
            K
Sbjct: 1133 K 1133


>gi|109898859|ref|YP_662114.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109701140|gb|ABG41060.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 572

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 16/262 (6%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNIIGFT 591
               +   + V  ++ L  + +   K +       E K++F+ ++S+E+R+P+  +IG  
Sbjct: 160 WFAHLARKNLVEKQQELERERDIALKHEKEAKAATEAKSAFLANMSHEIRTPMNGVIGMI 219

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +L+  +KL  +   Q  Y+     S+  L+ ++NDILD + ++ G + +      +    
Sbjct: 220 ELVSQTKLEKV---QQDYIATAKRSADSLMVIINDILDFSKIEVGELTIELVEFDVEQFF 276

Query: 652 NEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI- 709
            E+      +  E  +++ +I +  +    V D  R+ QI + +LSNA+ F+  G   + 
Sbjct: 277 AELLHDQQFQASEKGLKLSLIKEELQHTKVVGDPYRIRQIVNNLLSNAIKFTQSGHIQVR 336

Query: 710 --LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
             L ++ DN +   +V + G  +  +    +F+ F        R   G GLGLSI +   
Sbjct: 337 YSLTSSSDNLELHCAVTDTGIGVSNEALPYLFDSFSQADTSTTRKFGGTGLGLSITKQLC 396

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
           NL GG + + S     +T    
Sbjct: 397 NLMGGDIKVQSQLGKGSTFEFS 418


>gi|327484386|gb|AEA78793.1| Sensor histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 734

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 174/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 147 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 202

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 203 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 260

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 261 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 320

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 321 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 380

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 381 LKDE---LTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 437

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 438 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 496

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 497 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 556

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +    R
Sbjct: 557 MNGTVLVQSEVGQGSCFKVR 576


>gi|261252516|ref|ZP_05945089.1| sensor histidine kinase [Vibrio orientalis CIP 102891]
 gi|260935907|gb|EEX91896.1| sensor histidine kinase [Vibrio orientalis CIP 102891]
          Length = 810

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 119/240 (49%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E+    + + + K++F+  +S+E+R+P+  ++G   +L  +    L S+Q ++++ + 
Sbjct: 339 LEEEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKT---DLTSEQRKHMKTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + V+ G ++L  +   L  ++  +     T   E  ++ KV S+
Sbjct: 396 ESGEHMMTLLNEILDFSKVEQGHLELERAPFPLEAIIGSINSVYYTLCSEKGLQFKVYSE 455

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--FIFSVKNNGSSI 730
             +   +  D+ RL QI   +L+NA+ F+S+G   V  K    NG    +  V++ G  I
Sbjct: 456 VPESRWYRCDKARLRQILFNLLNNAVKFTSRGYVEVGFKEQTRNGRNFLVIQVRDTGIGI 515

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +   VF  F        RR  G GLGL+IV+   +L  G + ++S     +     +
Sbjct: 516 DKAVQDKVFKPFEQAESSTTRRFGGTGLGLAIVKQLCDLMDGEIKLTSEVGIGSCFEVAL 575


>gi|212218529|ref|YP_002305316.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|212012791|gb|ACJ20171.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 683

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 208/486 (42%), Gaps = 32/486 (6%)

Query: 329 QFHNRSFVELWEIDLAFLATNPS------NDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            + + +F  ++ I    L  NP+        E  + LR      +  N K     +   Y
Sbjct: 56  VYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRLRHLIMEWQVKNKKGAAYTVD--Y 113

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +  + + +  H  N  +  V       G    + ++++ +     +++  V      ++ 
Sbjct: 114 RIIDAYGEM-HWINETSYPVYEDDQCLGY-AGVVKDVSSEKLRVKEFDNAVHYFRHFVER 171

Query: 443 LSEGVAVFGPDG-RIKLSNPAFRSLWKT-EENRLSPGTHIRN--IAATCSRYYNESDGWD 498
           +S    V G  G +    +P +  +W    E+         +  +    S      + ++
Sbjct: 172 VSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNPKSWIDYVLPEDISNGKVNVNFYE 231

Query: 499 LFAAIIT-----SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             A   T      F    +   G +  + D+               +      D++R E+
Sbjct: 232 TAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIMENGKLVGFAGIAEDVTNDALR-EK 290

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
              E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+ +Q   ++ I
Sbjct: 291 EPWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLSDEQQGQIDVI 347

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H+  I++K   
Sbjct: 348 SQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFDY 407

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
              + S  + D +R+ Q+   +LSNA+ F+ KG  V L A     D       F+VK+ G
Sbjct: 408 PENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQLTANCLKKDHKKMTLCFTVKDTG 466

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +    S+FNRF    + ++ +  GVGLGLSIV+  +   GG +S++S     +   
Sbjct: 467 IGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFT 526

Query: 786 CRIPSK 791
           C IP +
Sbjct: 527 CIIPFR 532


>gi|171320663|ref|ZP_02909680.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171094093|gb|EDT39184.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 662

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 151/371 (40%), Gaps = 23/371 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D   + +       RI   NPA R L+  +            IA    R +   
Sbjct: 144 LLRRVVDASPDAIVGVDVARRITSWNPAARRLFGIDAAAAIGHDVTMLIAPRWLRLHPVP 203

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             +    A     D       G     S     ++  P+ +AQ   T +++T     ER 
Sbjct: 204 ASFANAGAPAGPLDVLCLRRDG-----SRFPATFTASPIVDAQGNCTGLSMTLREARERR 258

Query: 555 LTEKNE------------ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             ++ +               +++ +K+  +  VS+ELR+PL  I G+  +L++ +    
Sbjct: 259 RCKQRDLRTLRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVGVLRSGEGQGF 318

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                Q ++ I  S+  L  +V D+LD +++  G ++L  + + L  ++ E  + +    
Sbjct: 319 ---AHQAIDAIDRSARSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQEAVRELGETP 375

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             N + +            AD +RL Q+ S +LSNA+ F+  G  V +           S
Sbjct: 376 EANGLELSTECAMPSCVIAADAERLRQLLSNLLSNAIKFTPPGGRVKVSLNPAGARVRLS 435

Query: 723 VKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-E 779
           V + G  I  +    +F+ F     A    +RG+GLGLSIV +   LHGG V+ +S    
Sbjct: 436 VADTGQGISAERLPHLFDTFSRPEGAAALPKRGLGLGLSIVRNIARLHGGEVAAASEGAG 495

Query: 780 GVTTINCRIPS 790
             TT+   +P+
Sbjct: 496 RGTTVTVMLPA 506


>gi|332994914|gb|AEF04969.1| ATP-binding region, ATPase-like protein [Alteromonas sp. SN2]
          Length = 891

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 180/425 (42%), Gaps = 31/425 (7%)

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           +E  F V +  E       + +G+TL  I  S P                L  +Y  LV 
Sbjct: 67  QELAFCVIEGEEKLCTAMPMEHGRTLVKIARSKPS--------------ALAKRYYNLVT 112

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                ID + +  A+   DG+I L N  F++++    N+   G  + +I    S Y+ + 
Sbjct: 113 ----AIDKIPDA-AIICSDGKIDLVNEQFQNIFPFCGNKSLNGVPLDSILNDFSDYFAQG 167

Query: 495 DGW--DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           D     +    +    + ++ +  +         EY          +   +N +      
Sbjct: 168 DSHLQAVTYRFLRRKFNSKQEMSLSFTAPDGQFYEYRDNLTFTGGRVGLIINESQIKGLN 227

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L             K++F+  +S+E+R+PL  IIG  DL +  +    N    + ++ 
Sbjct: 228 EQLEISFNEATALSNAKSNFMAAMSHEIRTPLNGIIGLLDLCEHQEEFKGN----ELLKR 283

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +S SS  LL+L+ND+LD    DA +++L+ S + L  L  E+  +   +  + N+ + + 
Sbjct: 284 VSKSSISLLSLINDVLDFTKFDANMVQLSPSDVNLRVLCEELINTFYGQAKQQNVELTLF 343

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDN--GDFIFSVKNNGS 728
            D  +   V  D  RL Q+ + ++SN + F+ K  +T+ L+  +D+      F+V +NG 
Sbjct: 344 VDPVISRIVSVDELRLTQVLTNLISNGLKFNQKLNATLRLEVLQDDLTNYIHFNVIDNGI 403

Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I      ++F+RF            G GLGLSI +  + L GG + + S     +T   
Sbjct: 404 GIESTKVHTIFDRFTQANDDIHKTFGGTGLGLSICQKIVQLMGGGIYVDSELGKGSTFVV 463

Query: 787 RIPSK 791
           ++P +
Sbjct: 464 QLPLE 468


>gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
          Length = 646

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 48  QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQI 103

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 104 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 146

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 147 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 201

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 202 VDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRK 261

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V+
Sbjct: 262 QLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVR 320

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 321 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 380

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 381 QFTLRIPL 388


>gi|283851110|ref|ZP_06368394.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573506|gb|EFC21482.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 869

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 192/530 (36%), Gaps = 38/530 (7%)

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN-LTVAIAIFDQNRYLQFHNRSFVELWE 340
           VL        A     E  + +       +    + V + + + +  +   N +    W 
Sbjct: 201 VLGGSLAMAGARRRKAEQALAESEGKYRSLFDQGMDVILLVAEDSGRILDCNLAVTAEWG 260

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK--------SSETHKDTW 392
            +   L        LL    +    P +  +   + ++    +           + K  +
Sbjct: 261 YECEELVGRTPASLLLATPEAGQATPVEARYADGRRSLVWETRLVTRDGAVRDVSVKTGF 320

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV--- 449
               G+ + +            ++ ++T +   ET       +     D+L +GV     
Sbjct: 321 FTLGGRRVRLE-----------IYRDVTERKKDETALLEREALLRGLGDNLPDGVIYCLE 369

Query: 450 FGPDG--RIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
             PDG  R    +     L+     R+  + G     I A     +  ++          
Sbjct: 370 VRPDGGRRFLSMSQGVERLFDLPAARVLENAGLLFDRIEAADREAFRRAEVEAAAGRAAL 429

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                 ++  G++             P           +VT   R E  L +       A
Sbjct: 430 DVQARMRAGDGSVRWCQFRAAS-RQAPEGGVVFDGVLFDVTAQKRTESNLRQAMAEAETA 488

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            ++K+ F+ ++S+E+R+PL  ++G   LL+ S    L+ + +  V         L+ ++ 
Sbjct: 489 SKVKSEFLANISHEVRTPLNGVLGMLQLLEMS---PLSEEDAASVATALTCGRGLVKVLA 545

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADR 684
           DILD + +DAG + L      +  ++ +V   ++ +  +  I +   +SD        D 
Sbjct: 546 DILDFSLIDAGRVALCQDACDIRAVVTDVCGMLSPECGKKGISLFSEVSDAVPPFVATDA 605

Query: 685 QRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFN 740
            RL QI   +L NA+ F+S G     I+ A+R  G    +F+V++ G  IPE+    +F+
Sbjct: 606 ARLRQILFNVLGNAVKFTSWGVVRLSIVPASRRGGTLHLLFTVRDTGIGIPEERMDEIFD 665

Query: 741 RFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F         +  G GLGL IV+  I L  GH+++ S     T     I
Sbjct: 666 PFTQIDGSLTRKFGGTGLGLGIVKRLIGLLDGHITVESEPGKGTDFTFSI 715


>gi|270157008|ref|ZP_06185665.1| legionella transmission sensor LetS [Legionella longbeachae D-4968]
 gi|269989033|gb|EEZ95287.1| legionella transmission sensor LetS [Legionella longbeachae D-4968]
          Length = 868

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/315 (22%), Positives = 134/315 (42%), Gaps = 14/315 (4%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            +   R   +    +    I T+   E   ++     L    LE +I  L +   + T  
Sbjct: 210 ISRLRRSMKQILRNEFETEIKTTSSGELGIIEQGCSHLQKKHLE-TIRDLNHHIEVATAD 268

Query: 544 NVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                   E     L+ + + + +    K+ F+ ++S+E+R+P+  +IGFT++L  SKL 
Sbjct: 269 LQQSLELLEEKNIELSLEKKKIEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLD 328

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  YV+ I +S+  LL ++NDILD + +DAG + L+   + +   ++EV    A 
Sbjct: 329 PL---QLDYVKTIKSSAQDLLGIINDILDFSKIDAGKLHLDCIPLNIRHCIDEVLALAAP 385

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
             H+  I +  I++  +   V  D  R+ Q  S +++NA+ F+  G  +I        + 
Sbjct: 386 NAHKKGIDLIPITELNVPKIVLGDPFRVKQFISNLVTNAVKFTDHGYVLIRTNVEQETEK 445

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
                 ++ + G  I  +    +F  F         +  G GLGL I +       G ++
Sbjct: 446 DYTLCITITDTGLGISPEDQSKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMKGRIT 505

Query: 774 ISSSDEGVTTINCRI 788
            +S     +     I
Sbjct: 506 FASELNKGSVFTAYI 520


>gi|254224966|ref|ZP_04918581.1| sensor histidine kinase [Vibrio cholerae V51]
 gi|125622654|gb|EAZ50973.1| sensor histidine kinase [Vibrio cholerae V51]
          Length = 736

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 173/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 149 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 204

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 205 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 262

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 263 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 322

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 323 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L  KQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 383 LKDE---LTPKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 655 KQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+      +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEIADGRWYYGDKARLRQIIFNLLSNAVKFTEVG-FVAVGLS 498

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                D    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 499 EESCGDENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +  N R
Sbjct: 559 MNGSVLVQSEVGKGSCFNVR 578


>gi|328885443|emb|CCA58682.1| Two-component hybrid sensor and regulator [Streptomyces venezuelae
            ATCC 10712]
          Length = 1785

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 24/278 (8%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     V  T+   A + L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 1285 QNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLAD 1344

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L  KQ ++ E I  + + LL L+NDILDL+ V+AG M ++ + I L  L++ V+ 
Sbjct: 1345 NAETNLTPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEA 1404

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----- 710
            +      E  +   V    +L  +   D QRLLQ+   +LSNA+ F+  G+  ++     
Sbjct: 1405 TFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAG 1464

Query: 711  ---------------KAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
                                  D I FSV + G  I     + +F  F         +  
Sbjct: 1465 ADVPQSIREQLLEAGSLRDPEADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYG 1524

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI      L GG +  +S     +T    +P 
Sbjct: 1525 GTGLGLSISREIARLLGGEIFAASEPGRGSTFTLYLPL 1562


>gi|320547234|ref|ZP_08041527.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812]
 gi|320448122|gb|EFW88872.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812]
          Length = 450

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 142/385 (36%), Gaps = 30/385 (7%)

Query: 416 FENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L  +     K      + ++++GV      G I + N   +      E   
Sbjct: 75  LNDLSTVFRLAQENLAQEKNRLASILSYMTDGVLATDRSGNITMINQTAQQQLNL-EREE 133

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           + G +I +I    S Y       DL +       + R      + L     + +++    
Sbjct: 134 ALGMNIVDILGDDSDY----TYHDLVSKTPDIVLNRRDETGEFITLR----IRFALNRRD 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D++  E+            D  +  FV ++S+ELR+PLT++  + + L
Sbjct: 186 SGFISGLIAVLHDTMEQEKE-----------DRERRLFVSNISHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +++D+L+L+ +D   ++L          +  +
Sbjct: 235 DEGALKEDIAP--SFIKISLDETNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSI 292

Query: 655 KQSI-----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                       +      I      K      D  ++ Q+   IL+NA+ +S  G  + 
Sbjct: 293 LNRFDQIKSQHTVAGKQYEIVRDYPIKSIWLEIDPDKMTQVLDNILNNAIKYSPDGGKIT 352

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +         I S+ + G  IP+     +F+RF          + G GLGL+I +  +  
Sbjct: 353 VSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQ 412

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           H G +   S+    +T    +P ++
Sbjct: 413 HKGFIWAQSTYGKGSTFTIVLPYEK 437


>gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 948

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQI 405

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 406 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 448

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 449 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 503

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 504 VDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRK 563

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V+
Sbjct: 564 QLGLYCFIEPNVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVR 622

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 683 QFTLRIPL 690


>gi|148979754|ref|ZP_01815691.1| aerobic respiration control sensor protein ArcB [Vibrionales
           bacterium SWAT-3]
 gi|145961637|gb|EDK26936.1| aerobic respiration control sensor protein ArcB [Vibrionales
           bacterium SWAT-3]
          Length = 783

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 150/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L    E  L   T  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNEDGVFSGCNRAVEELTGKTEKDLVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   E+D          ++D   +   G       S  E   +P  +     
Sbjct: 202 DVYSKEIAQQVVETDKKVFADNQALTYDQWLEYPDG-----RKSYFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER   E  E++ KA   K +F+  +S+ELR+PL  IIG + +L  S+  
Sbjct: 257 LGLVGFGRDITER--KEHQESIEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQ-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q + ++ I  S+  L N+ NDI+D+   D   ++L  + I   D + E++   A 
Sbjct: 313 -LTTEQRKQMQTIKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVVEIESISAL 371

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L  +   D  RL Q+   ++SNAM F+  G  V  + A  D   
Sbjct: 372 MAEQKGLRFDLERLSDLPVAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSADIDGDF 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++ +  IN+  G + 
Sbjct: 432 ANITMEVEDTGIGIPESELEKIFAMYYQVKSGTDNLHAVGTGIGLAVSKQLINMMDGDIE 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VTSEEGFGSTFTVSI 506



 Score = 42.2 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R++ G     N + ++ T   G  
Sbjct: 135 DLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNEDGVFSGCNRAVEELT---GKT 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVL--- 283
            +  +G +   ++ +EI ++++ +        +    +       G    +++ +V    
Sbjct: 192 EKDLVGLTPWDVYSKEIAQQVVETDKKVFADNQALTYDQWLEYPDGRKSYFELRKVPFYS 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + +  
Sbjct: 252 KDGRHLGLVGFGRDITERKEHQESIEK 278


>gi|119486866|ref|ZP_01620841.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119456159|gb|EAW37292.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 372

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 155/344 (45%), Gaps = 14/344 (4%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD---- 509
           G +   N A   + +T+ + +     I+            ++ +++    +T++ D    
Sbjct: 32  GIVSDGNKALEKVGETQPDLVLMDIVIKGEMDGIETAEKINESFNIPVIYVTAYADDSTL 91

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           ER  L G+          Y + P  + +   T        +A+  + +  E ++ + E K
Sbjct: 92  ERAELTGSYG--------YILKPYKDRELHATIKLALRKHQAQLEMQKNLENVQLSKEEK 143

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           +  +   S++LR+PL+ I   +DLL+       + K+ ++ + I ++   +  L+ D+L 
Sbjct: 144 SRLLSIASHDLRTPLSAIQMSSDLLENYDQKLTSEKKIKHFQRIKSAIKNMNQLLEDVLM 203

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-IRIKVISDGKLGSFVADRQRLL 688
           L+  ++G M    + ++L    + +  S      + + +      + +    + D + L 
Sbjct: 204 LSLTESGKMVFKPTPLILKQYCSNLIDSFQVLFTDKHTLEFNCNCNYE-RKLMLDEKLLN 262

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            I   +LSNA+ +S +G T+     +++   +F V++ G  +P +    +F  F   A+ 
Sbjct: 263 HILGNLLSNAIKYSPEGGTIHFDLIQESQKVVFRVRDEGIGLPPEYKAKLFQSFERAANV 322

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G+ +G GLGLSIV+  ++LHGG +S+ S     TT    IP  E
Sbjct: 323 GEIKGTGLGLSIVKQAVDLHGGEISVESEVGKGTTFTVTIPVLE 366


>gi|86148693|ref|ZP_01066971.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
 gi|85833512|gb|EAQ51692.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
          Length = 1462

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 170/395 (43%), Gaps = 35/395 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL---- 474
           +  +   E +            D++ +GV +     +   ++P      +          
Sbjct: 567 IEQRKIAEQRAKAAEAHLQTLADNI-DGVVL-----KHIQTHPRQPLDIRFSFVSAGVSD 620

Query: 475 SPGTHIRNIAATCSRYYNESDGWDL-------FAAIITSFDDERKSLQGTLELLSDSVLE 527
             G  + N+       +N     DL         AI T   +  + +Q  LE      ++
Sbjct: 621 MFGLSVDNVKEHPQHLFNLISEDDLPQFETSMLEAIETGHWENEQRMQ--LESGQTKWVK 678

Query: 528 YSIIPLPNAQTMLTFVNVTDS---VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++   + N++T+     +TD     + ++AL    +   +A   K+ F+  +S+E+R+P+
Sbjct: 679 FN-SQVSNSKTIEWNTVITDITLLKKQQQALDNARQKAERATAAKSQFLATISHEVRTPI 737

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           + I+G  +L++  +   L+ +       ++ S+  LL++VND+LD + ++AG + LN + 
Sbjct: 738 SGILGLLELMQEHQ---LSEELLNLHGGLNQSARNLLHIVNDVLDYSKIEAGKLDLNPTE 794

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
           I L  +L  + Q  +    +  +      D  L  ++ AD  RL QI +  L+NA+ F+ 
Sbjct: 795 IELGKVLARIVQPQSIHAQQKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKFTE 854

Query: 704 KGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            G+      +++          +V + G  IP+D  +S+F  F        RR  G GLG
Sbjct: 855 HGTISLHIDVIEQNEHQQKVSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTGLG 914

Query: 758 LSIVESFINLHGGHVSISSSDEGVT--TINCRIPS 790
           LSI    I    G++ +SS +   +  T+   +P+
Sbjct: 915 LSIALKLIEQMDGNIELSSEEGKGSHFTVTVTLPT 949


>gi|149192095|ref|ZP_01870319.1| sensor histidine kinase [Vibrio shilonii AK1]
 gi|148834081|gb|EDL51094.1| sensor histidine kinase [Vibrio shilonii AK1]
          Length = 734

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 124/246 (50%), Gaps = 12/246 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L ++    + + + K +F+  +S+E+R+P+  ++G   +L  +    LN +Q + ++ + 
Sbjct: 339 LDQERVKAQASTKAKTAFLATLSHEIRTPMNGVLGTAQILLKT---DLNLEQRKLLKTLY 395

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   +++L+N+ILD + ++ G ++L      L+ ++  +     T  +E  +R  V S+
Sbjct: 396 DSGDHMMSLLNEILDYSKIEQGHLELENRPFPLSSIIGSMHSVYHTLCNEKGLRFSVFSE 455

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIFSVKNNGSSI 730
             +   +  D+ RL QI   +L+NA+ F+S+G   V L    ++G    +  VK+ G  I
Sbjct: 456 VDETRWYSGDKARLRQILFNLLNNAVKFTSQGMVEVYLSEEVNDGVTALVIRVKDTGIGI 515

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             D    VF  F        RR  G GLGL+IV+   +  GG+++++S +   +    R+
Sbjct: 516 SPDAQARVFKPFEQAESSTTRRFGGTGLGLAIVQEITHCMGGNITLTSQEGMGSEFTVRV 575

Query: 789 ---PSK 791
              P K
Sbjct: 576 QLEPCK 581


>gi|288940490|ref|YP_003442730.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895862|gb|ADC61698.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 762

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 156/401 (38%), Gaps = 46/401 (11%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           LE        +  E        +     DG I+ +N +  +L     + L        I+
Sbjct: 91  LEQSLQRYEDLYQEA----PVALLTLSEDGTIREANQSAATLLDEPRSALIGRRLGLWIS 146

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL--EYSII-PLPNAQTMLT 541
                 +N      L A +++     R  L+  ++      +  E +++ P    +  L 
Sbjct: 147 EDRRPAFNT-----LLADVLSGECRRRLELRLVIQHRPACWVLAETTLVKPTVAREIRLA 201

Query: 542 FVNVTDSVRAERALTEKNEALRKADEI------------------------KNSFVQHVS 577
             ++++    E  L +        + +                        K+  + H+S
Sbjct: 202 LTDISERKALEEQLRQGEALWDSEERLCSLNAELEARGAVRIAEVNAANAAKSHLLAHMS 261

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I G  +LL+    G LN++Q   V  I  +   LL +++DILDL+ ++AG 
Sbjct: 262 HEIRTPLNVITGLAELLEQ---GELNAQQQHQVRRIQEAGESLLGILDDILDLSRIEAGK 318

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILS 696
           + +      L+ LL  ++           + + +       G+F+ D  RL Q+ + ++ 
Sbjct: 319 LGIARQPFELHKLLARIESFQGRCARAKGLSLDLDIPPLPAGAFLGDPLRLEQVLNNLIG 378

Query: 697 NAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
           NA+ F++ G       + +A  D     F V++ G  I   + + +F  FV         
Sbjct: 379 NAIKFTNTGGITLRIQVREAETDTPYLHFEVEDTGIGIEPQILEDLFQPFVQADANLTRS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           R G GLGL+I +  + L GG +   S     +T    +P +
Sbjct: 439 RGGTGLGLAISKHLVELMGGKIGAVSQPGRGSTFWFDLPLE 479



 Score = 38.8 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 64/229 (27%), Gaps = 15/229 (6%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +   L    ++     VA+    ++  ++  N+S   L +   + L        + E  R
Sbjct: 91  LEQSLQRYEDLYQEAPVALLTLSEDGTIREANQSAATLLDEPRSALIGRRLGLWISEDRR 150

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
            A                  +    +     W L     +   V    R        +++
Sbjct: 151 PAFNTLLADVLSGECRRRLELRLVIQHRPACWVLAETTLVKPTVAREIR----LALTDIS 206

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG------RIKLSNPAFRSLWKTEENRL 474
            +  LE +       QGE +    E +     +       RI   N A  +      +  
Sbjct: 207 ERKALEEQLR-----QGEALWDSEERLCSLNAELEARGAVRIAEVNAANAAKSHLLAHMS 261

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
                  N+    +    + +        +    +  +SL G L+ + D
Sbjct: 262 HEIRTPLNVITGLAELLEQGELNAQQQHQVRRIQEAGESLLGILDDILD 310


>gi|326332294|ref|ZP_08198574.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium
            Broad-1]
 gi|325950000|gb|EGD42060.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium
            Broad-1]
          Length = 1786

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 146/323 (45%), Gaps = 17/323 (5%)

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            N     SR           AA +    DE +  Q  L+  +++ LE     L + Q    
Sbjct: 1162 NAIMASSRTEELLVESQRLAAELQDKQDEGERQQVELQQ-TNAALEEKARQLAD-QNQAI 1219

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             +   +   A R L E+ E L  +   K+ F+ ++S+ELR+PL +++    LL  +  G+
Sbjct: 1220 EIKNLEIEEARRGLEERAEQLALSSRYKSEFLANMSHELRTPLNSLLILARLLSDNVDGN 1279

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            LN++Q +Y   I  + T LL L+NDILDL+ V+AG M ++ + + +  ++  V+ +    
Sbjct: 1280 LNARQVEYSRTIHGAGTDLLQLINDILDLSKVEAGKMDVHVTDVDVTSVVEYVEATFRPL 1339

Query: 662  MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---------- 710
              E ++   V  D  +   + +D+ RL Q+   +LSNA+ F+  G   +L          
Sbjct: 1340 TAEKDLDFIVSVDPDVPRLLRSDQHRLQQVLRNLLSNAVKFTDSGGVRLLIRNASGERFS 1399

Query: 711  --KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
                 + +    FSV + G  IP +  K +F  F         +  G GLGLSI     +
Sbjct: 1400 TRSLQQADAVLAFSVIDTGIGIPPEKLKVIFEAFQQADGTISRKFGGTGLGLSISREVAH 1459

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG + + S     ++    +P
Sbjct: 1460 LIGGEIQVKSEPGHGSSFTLYVP 1482


>gi|283781072|ref|YP_003371827.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
 gi|283439525|gb|ADB17967.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
          Length = 461

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 132/365 (36%), Gaps = 26/365 (7%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     +  + EGV    P+  I L+N A R +    ++               
Sbjct: 113 EVQENTERLQTVLQSMVEGVLAVDPEHSIMLANDAARKMLDFAKSN-----------PLG 161

Query: 488 SRYYNESDGWDLFAAIITSFDDERK-SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                 +    +F A+ T+F+      L+     +    L      LP +      + + 
Sbjct: 162 RPLLEVTRARPVFEAVNTAFNSPGPVELEFESPGVHRRCLALHATRLPGSPCPGVMLVLR 221

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     R            + ++   V +VS+EL++PL  I  + + L+   +       
Sbjct: 222 DVSELRRL-----------ENLRRELVANVSHELKTPLAAIKAYAETLRLGAVND-PEIN 269

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +V  I   +  L  L+ DIL +A V+AG        + L++L+ E     A       
Sbjct: 270 LTFVHRIEEQAERLHELILDILQIARVEAGQEAFEICDVPLHELIEECLAQFADLAQSKR 329

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +      +      D + +  I + ++ NA+ ++     V ++   +    +  V++ 
Sbjct: 330 VELIGPPIDQEIFVRGDEEGVRTILNNLVDNAIKYTPADGRVTVRCTIETSAVMLEVQDT 389

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E     VF RF         +  G GLGLSIV+      GG V + S+    +T 
Sbjct: 390 GIGIAEKDQARVFERFYRVDKARSREMGGTGLGLSIVKHLSQALGGSVGLDSTIGKGSTF 449

Query: 785 NCRIP 789
              +P
Sbjct: 450 RVHLP 454



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 60/214 (28%), Gaps = 17/214 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             +   V +       +L ++   +   D    +   N +  ++    L F  +NP    
Sbjct: 108 AHRVDEVQENTERLQTVLQSMVEGVLAVDPEHSIMLANDAARKM----LDFAKSNPLGRP 163

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           LLE  R+                +   ++S   H+    L       +  +  P  G + 
Sbjct: 164 LLEVTRARPVFEAVNTAFNSPGPVELEFESPGVHRRCLAL---HATRLPGSPCP--GVML 218

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  +++    LE     LV      +      +  +    R+   N          E  L
Sbjct: 219 VLRDVSELRRLENLRRELVANVSHELKTPLAAIKAYAETLRLGAVND--------PEINL 270

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           +    I   A        +        A   +F+
Sbjct: 271 TFVHRIEEQAERLHELILDILQIARVEAGQEAFE 304


>gi|15641833|ref|NP_231465.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147674034|ref|YP_001217367.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|153819807|ref|ZP_01972474.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|227081960|ref|YP_002810511.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229508072|ref|ZP_04397577.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229511689|ref|ZP_04401168.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229518828|ref|ZP_04408271.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229607633|ref|YP_002878281.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254848917|ref|ZP_05238267.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|298498130|ref|ZP_07007937.1| sensor histidine kinase [Vibrio cholerae MAK 757]
 gi|9656358|gb|AAF94979.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126509646|gb|EAZ72240.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|146315917|gb|ABQ20456.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|227009848|gb|ACP06060.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|227013730|gb|ACP09940.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|229343517|gb|EEO08492.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229351654|gb|EEO16595.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229355577|gb|EEO20498.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229370288|gb|ACQ60711.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254844622|gb|EET23036.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|297542463|gb|EFH78513.1| sensor histidine kinase [Vibrio cholerae MAK 757]
          Length = 736

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 174/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 149 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 204

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 205 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 262

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 263 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 322

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 323 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 383 LKDE---LTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 498

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +    R
Sbjct: 559 MNGTVLVQSEVGQGSCFKVR 578


>gi|28881238|emb|CAD70476.1| related to two-component histidine kinase chk-1 [Neurospora crassa]
          Length = 2177

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 123/253 (48%), Gaps = 19/253 (7%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L      L++A E K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I 
Sbjct: 1476 LKLLETKLKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQ 1532

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S+  L+ ++NDILDL+ VDAG+MKLNY       L+ +V + ++T      + +  + +
Sbjct: 1533 TSANSLIMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVE 1592

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-----VIL----KAARDNGDFIFSVK 724
              + ++V  D+ R+ Q+   ++ NA+ F+++G       V++        +     FS+ 
Sbjct: 1593 EDVPAWVKGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKVVVPNHGHLYENEIMLEFSII 1652

Query: 725  NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G    E+  + +F  F     +   Q  G GLGL I    + LHGG +   +     +
Sbjct: 1653 DTGRGFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMDGKAVLGKGS 1712

Query: 783  TINCR----IPSK 791
            T        +P++
Sbjct: 1713 TFTFTARFGLPTE 1725


>gi|256422621|ref|YP_003123274.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
 gi|256037529|gb|ACU61073.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
          Length = 566

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 176/397 (44%), Gaps = 31/397 (7%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPD 453
            + ++ +   G +   F ++  ++D E +++ L K++ E       I+ +++G+      
Sbjct: 190 RIRISQHDEFGELAQAFNSMAEKLD-EYEHSNLAKIKFEKSRIDTIINQMNDGIIGLDES 248

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             +   N     L    E  +  G +  +IA             DL  +++ +      S
Sbjct: 249 RNLLFLNKVAEKLLGLREVEI-MGQYAPDIAV----------NNDLMRSLLKT-----DS 292

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
               L++ +D    Y  + + N       +     +R             + +E K +F+
Sbjct: 293 PVKELKIFADQKESYFHLDILNVTNNEKVIGQVIVLR-------NITPFHELNEAKTNFI 345

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+EL++P+ +I     LL  +++G++N +Q + V+ I+  +  LL + +++L+++ V
Sbjct: 346 ATISHELKTPIASIKMSAQLLTDTRVGAVNREQEELVKSIADDANRLLKITSELLNISQV 405

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           + G ++L    +  + +++    +++    + NI I++ ++      + D ++   + + 
Sbjct: 406 ETGHIQLKIEPVFPDIIIDNATNTVSALAQQKNIAIRIHNNTHAHKIMTDPEKTAWVLTN 465

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
            L+NA+ +S +   + L  +  N    FSV ++G  I E     +F+R+       ++ G
Sbjct: 466 FLTNAVKYSPEDGEIDLTTSIRNNSVEFSVADHGRGIEEKYLSRIFDRYFKVPGTPEKVG 525

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGLSI   FI   GG + + S+    +T    +P 
Sbjct: 526 TGLGLSISREFIEAQGGTIWVDSTLGEGSTFGFTLPL 562


>gi|148975516|ref|ZP_01812387.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145964944|gb|EDK30195.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 684

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 111/254 (43%), Gaps = 8/254 (3%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             + +  R   +  E  +  +KA E K+ F+  +S+ELR+P+  ++G   ++K     + 
Sbjct: 138 HRLFELKRNNLSYQEAADKAQKASEAKSLFLATMSHELRTPMNGVLGIAQIIKEDSQSAD 197

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ+Q    I  S   L+ ++NDILD + V+ G M+L  S   + D++  + +++    
Sbjct: 198 TRKQAQ---IIIDSGQHLVTILNDILDFSKVEQGKMELELSPFSVTDVVTHLDKTLTPLA 254

Query: 663 HENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDF 719
            +  I   +  +       V D  R  QI   +  NA+ F+  G   V  + A       
Sbjct: 255 TDKGISFVIKDNIPTNIQLVGDSARTRQILFNLAGNAVKFTESGKVEVEFEIAPTTPPSV 314

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I ED    +F  F        R   G GLGLSIV+  + L GG + +SS 
Sbjct: 315 NIMVSDTGIGIAEDKVDHIFTAFEQAELSTTRKFGGTGLGLSIVKQLVELMGGTIDVSSQ 374

Query: 778 DEGVTTINCRIPSK 791
               T     +P +
Sbjct: 375 LNMGTCFTISLPLE 388


>gi|332186852|ref|ZP_08388594.1| his Kinase A domain protein [Sphingomonas sp. S17]
 gi|332013185|gb|EGI55248.1| his Kinase A domain protein [Sphingomonas sp. S17]
          Length = 805

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 120/286 (41%), Gaps = 6/286 (2%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEI 568
           ER+ L+    ++  SV    ++       + T     + +RA    L   N+ L KA  +
Sbjct: 382 EREQLRTERLIMFGSVGAIIVVLGLLGIWLFTLGRSRNRIRAAHGDLAITNDRLEKALAV 441

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K  F+   S+E+R+PL  I+G T ++       L+S   + VE +  +   +  LV+D+L
Sbjct: 442 KTDFLATTSHEIRTPLNGILGMTQVMLADIR--LSSDTRERVEVMHGAGLTMRALVDDLL 499

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+A ++ G + L  +   L   + E  +    +     I             + D  R+ 
Sbjct: 500 DVAKIEHGRLTLEQAPFDLAATIREASRLWEDQAAAKGIGFTTDLRDCPTIVMGDSARIR 559

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           QI   +LSNA+ F+ +G  V L  +R +      V + G  IP +  + +F  F      
Sbjct: 560 QIVFNLLSNALKFTPEG-RVDLSVSRQSKGVSIRVSDTGIGIPAEKLEEIFEAFRQADAS 618

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             R   G GLGL+I        GG V++ S     T     +P  E
Sbjct: 619 TTRQFGGTGLGLAICRRLAQAMGGDVTVDSELGHGTHFTLSLPLVE 664


>gi|323483203|ref|ZP_08088594.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum
           WAL-14163]
 gi|323403476|gb|EGA95783.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum
           WAL-14163]
          Length = 748

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 114/244 (46%), Gaps = 11/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            +    E    A+  K+ F+ ++S+++R+P+  IIG T + + +       +    ++ I
Sbjct: 345 EIIRAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMTRIARENIGDG--ERVEDCLKKI 402

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672
             SS +LL ++ND+LD++ ++A  ++L      +  +++  +  +  +     + ++   
Sbjct: 403 DISSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDSNRMIMERQAENKQLTLEFKK 462

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNN 726
           ++    + V D  RL QI   ILSNA+  + +G  +  +         D+G + F + + 
Sbjct: 463 TNLNHDAVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEIIELPCTREDSGRYRFVISDT 522

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  + E+  K +F  F       R + +G GLG++I +  + L GG V + S     T  
Sbjct: 523 GVGMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMGGTVEVESRQGEGTVF 582

Query: 785 NCRI 788
              +
Sbjct: 583 RVEL 586


>gi|260770406|ref|ZP_05879339.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii CIP 102972]
 gi|260615744|gb|EEX40930.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii CIP 102972]
          Length = 1203

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 157/381 (41%), Gaps = 21/381 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-----PAFRSLWKTEENR 473
           +++Q          + +    I+ L   + +     ++ L+N     P   S        
Sbjct: 492 VSIQERDALHSKEQLALLQHVINGLPNRIFIHDAHYQLLLTNCQGAGPGACSPCSMRAEA 551

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            +    + N+A   +          L    +T  D +       +  ++    +      
Sbjct: 552 ANSACLVENVAEFNT---------VLQGQTVTRHDVDVTDCPSGMNTVNYRRTQLRGGEN 602

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    +++     ER L +     +KA   +  F+  +S+ELR+P+  ++G  ++
Sbjct: 603 DEKFILTVVNDISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEM 662

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK   +   N      +  + +S+  L  LVNDILD + ++A  ++L+     L   + E
Sbjct: 663 LK---IRETNEDTRLILNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGE 719

Query: 654 VKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           + +   T   E ++   V  + G++ + + D  RL QI + +LSNA+ F+  G  V +  
Sbjct: 720 LLRVHCTAAREKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFTQSG-FVSVDI 778

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
                D + ++ ++G  +  +  K+VF+ FV        +  G GLGL+IV   + +  G
Sbjct: 779 DVTERDMVMNISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKG 838

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            ++I S     T+I   IP +
Sbjct: 839 DITIDSEQGKGTSIQVTIPIQ 859


>gi|253568518|ref|ZP_04845929.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6]
 gi|251842591|gb|EES70671.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6]
          Length = 660

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 125/243 (51%), Gaps = 7/243 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL    E   +A+++K++FV ++S+E+R+PL  I+GF+ LL  +       +Q +Y +
Sbjct: 417 EIALRHAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDTVEA--TDEQKEYAD 474

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +S +LL L++D+LD++ +++G +   Y    L +    +  ++  K    +I +++
Sbjct: 475 IIQTNSELLLQLISDVLDVSRLESGKLLFKYEWCELVNHCQNMI-TLTRKNRTRDIDVRL 533

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSS 729
               +      D  RL Q+   +L+NA+ F+  G ++ L  +   ++   +FSV + GS 
Sbjct: 534 QMPKEPYMLYTDPLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTGSG 593

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IPED  + VF RF       Q  G GLGL+I +  I   GG + I  + +         P
Sbjct: 594 IPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQRMGGDIWIDKNYKNGARFVFSHP 651

Query: 790 SKE 792
            K+
Sbjct: 652 IKK 654


>gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
 gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
          Length = 1111

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 3/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ 
Sbjct: 427 QIIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDI 486

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +  +  +    IRI   
Sbjct: 487 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQ 546

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L    AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP 
Sbjct: 547 VPADLKVVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISANVVDDHVRVQVVDTGQGIPA 605

Query: 733 DMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 606 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 665


>gi|83310209|ref|YP_420473.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945050|dbj|BAE49914.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 976

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 158/386 (40%), Gaps = 31/386 (8%)

Query: 425 LETKY---NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           LE +        +         +E +  + P  +    +P    +       L+      
Sbjct: 314 LEERLLHLKRSEERYALAAKGANEALWDWSPQVQNIYFSPRMEEILGVAAGSLNGSP--- 370

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPL----PN 535
               T  ++ +  D   L A +  + +    +L  Q  +  +S   L   +       P+
Sbjct: 371 ---QTWRQHVHPEDRALLQAGLDEACERRSDTLDLQFRMRHVSGQTLWVRMRGAVSYGPD 427

Query: 536 A---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + + +  ++TD  R E+    ++ A   A   K+ F+  +S+E+R+P+  I+G   
Sbjct: 428 GAPTRLVGSLGDITDRKRYEQE-RLRSAAAEAASVAKSEFLAVMSHEIRTPMNAILGMIR 486

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  S    L+  Q  Y E + +S  +LL+++NDILDL+ ++AG ++L      L  +++
Sbjct: 487 LLLDS---PLDETQRDYAETVLSSGEVLLSILNDILDLSRIEAGKLELERIAFDLPKVVD 543

Query: 653 EVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
            +   +  +  E ++ ++   + G       D  RL Q+   +LSNA+ F+  G   + L
Sbjct: 544 SIIHLMTPRAREKSLALRSWTAGGVPARLTGDPTRLRQVLLNLLSNAIKFTEAGEVSLHL 603

Query: 711 KAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            A             VK+ G  I  +    +F  F        RR  G GLGL+I ++ +
Sbjct: 604 SAEIQPDGIAAIRMEVKDTGIGISPEARSRLFANFAQADASITRRFGGTGLGLAICQNLV 663

Query: 766 NLHGGHVSISSSDEGVTTIN--CRIP 789
            L  G + + S     +T     R+P
Sbjct: 664 RLMNGEIGVDSVPGQGSTFWFVVRLP 689


>gi|109896835|ref|YP_660090.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109699116|gb|ABG39036.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1045

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +    A  +K+ F+ ++S+E+R+PL  I+GF+  L+    G  ++ +   +  I+
Sbjct: 418 LDIARKEAVAASNVKSQFLANMSHEIRTPLNAILGFSKELQQ---GDFSADKRDQINIIN 474

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A++  L+ +VND+LD++ ++AG +++N     +N+LL E+   +A   H   +      +
Sbjct: 475 AAADNLMTIVNDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHLKGLEFVYDIE 534

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNG--DFIFSVKNNGSS 729
                 + D  R+ QI + +L NA+ F+  G  + L A+    ++G  +    +++ G  
Sbjct: 535 PLPLKLIGDSYRIRQILNNLLGNALKFTDTGH-IGLAASGKVLEHGIFELNIKIEDTGIG 593

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F           +G GLGL I +  + L  G +S+ SS    +T N  
Sbjct: 594 ISREDKRKLFTAFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLSLQSSPGQGSTFNVT 653


>gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter turicensis z3032]
 gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032]
          Length = 703

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 156/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   +SN     L     N L+     R    
Sbjct: 105 QRLEEHEQFNRKIVASAPVGICILRTQDGTNIISN----ELAHNYLNMLTHEDRQRLTQI 160

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I            V+V
Sbjct: 161 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAI---------CVLVDV 201

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 202 SARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQE---LPKG 258

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  +  SS++LL +++DILD + +++  +K+        +L++ +  +    +   
Sbjct: 259 VDRLVTAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPRELMSHITANYQPLVVRK 318

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +    + D  RL Q+ S +LSNA+ F+  G  +IL          F V+
Sbjct: 319 QLGLYCFIEPDVPMTLLGDPMRLQQVISNLLSNAIKFTDIG-CIILHVGTQGDYLCFRVR 377

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  IN+  G +S+ +     +
Sbjct: 378 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTETGMGS 437

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 438 QFTIRIPL 445


>gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
 gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
          Length = 1126

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 132/309 (42%), Gaps = 23/309 (7%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           A    +    +D  D    +  SF   ++S++  ++L+ D                    
Sbjct: 388 AGDLDQEMISTDRKDEIGRLAVSFARMQRSIREKIQLIKD-------------------- 427

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +       +  KN  L  AD++K+ F+   S+ELR+PL  ++G  + L T   G ++
Sbjct: 428 QNEELEANLATIQLKNNELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPIS 487

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     +E I  S   L +LVND+LD   +  G + +N     L+   + V +     + 
Sbjct: 488 ASHRHQLEIIINSGQRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLG 547

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +IRI    D  L     D QRL Q+   ++ NA+ ++S+G  +++ A+  +      V
Sbjct: 548 NKSIRIINQVDKSLPVVFVDEQRLEQVLYNLIGNAIKYTSEG-KIVISASVVDQFLRVQV 606

Query: 724 KNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP D  + +F   +         R+G GLGLSI    I L GG + +SS     
Sbjct: 607 VDTGHGIPADELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVG 666

Query: 782 TTINCRIPS 790
            T +  +P 
Sbjct: 667 ATFSFTLPL 675


>gi|78188414|ref|YP_378752.1| multi-sensor signal transduction histidine kinase [Chlorobium
           chlorochromatii CaD3]
 gi|78170613|gb|ABB27709.1| multi-sensor signal transduction histidine kinase [Chlorobium
           chlorochromatii CaD3]
          Length = 595

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 154/364 (42%), Gaps = 25/364 (6%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +        + E + V    G I  +NP+    ++  +   +             +
Sbjct: 246 RRHEEWYLAVFSAIREAIIVTDAAGDIIFANPSAARTFRMGQTIFTSRP---------VK 296

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQTMLTFVNVTDS 548
           +  +    +LF  + T+    RK          + +++ + +PL    +T    V V + 
Sbjct: 297 HLPDPTLQELFNRVHTTRVMVRKEEVALSTARGERIMQINSMPLATMGKTYEGCVFVLND 356

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +   R L          ++I+  FV  VS+ELR+PLT I G+T+ L    L    +    
Sbjct: 357 ITTVRNL----------EKIRRDFVASVSHELRTPLTVISGYTETLLEGALHD-PAHAVP 405

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ I  +S  L  LVND+LDL+ +++G +   ++++ +  ++ +  + +   + +  IR
Sbjct: 406 FLKTILQASQQLTALVNDVLDLSRIESGAIDYQFTSVDIGGVVRKAVEFLKPSLEKKQIR 465

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDNGDFI-FSVKNN 726
           + V     L +  AD + L  +   ++ NA++   +    + + A   N + +   V++N
Sbjct: 466 LDVRITAGLPTIYADARYLDIVIRNLVDNAINAVDERNGRIRISAFAMNKEVVRLEVEDN 525

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I +     +F RF         Q  G GLGLSIV+  +  H G + ++S     +  
Sbjct: 526 GVGIAKADLDRIFERFYRVDKGRSRQYGGTGLGLSIVKHIVLAHQGDIVVNSKLNHGSVF 585

Query: 785 NCRI 788
           +  +
Sbjct: 586 SVLL 589



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 63/201 (31%), Gaps = 41/201 (20%)

Query: 243 LFKEEIKK-RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV--SKEI 299
           L    +++   ++   L+ +F   +S            ++  + FGE   A++      I
Sbjct: 196 LLTRPLRQLAAVARQRLQGDFSAALS------------IKPKHEFGELAHALNSMSDSVI 243

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-------PSN 352
           T+         +   +  AI + D    + F N S    + +      +        P+ 
Sbjct: 244 TMRRHEEWYLAVFSAIREAIIVTDAAGDIIFANPSAARTFRMGQTIFTSRPVKHLPDPTL 303

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN---GQTLHVIVTSNPR 409
            EL   + +   +         KE +       E       +P    G+T          
Sbjct: 304 QELFNRVHTTRVM-------VRKEEVALSTARGERIMQINSMPLATMGKTYE-------- 348

Query: 410 GGTIWMFENLTVQVDLETKYN 430
            G +++  ++T   +LE    
Sbjct: 349 -GCVFVLNDITTVRNLEKIRR 368


>gi|304393143|ref|ZP_07375071.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
            R2A130]
 gi|303294150|gb|EFL88522.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
            R2A130]
          Length = 1323

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 168/361 (46%), Gaps = 6/361 (1%)

Query: 436  QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                +D  ++GV +   +G ++  N +  +L+  +   ++    I  + A  S       
Sbjct: 958  LRAILDVSTDGVIIVSNEGVVRDINRSAEALFDVDAEAIAH-RSITRLLAPESHRTALDY 1016

Query: 496  GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERA 554
              ++ A  + S  ++ + + G         L  ++  L ++        ++T   +AE  
Sbjct: 1017 LANMGATGVASLLNDGREVVGKTSQGGLVPLFMTVGQLQHSDDCCAVVRDITHWKKAEEE 1076

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYI 613
            L     A   A+E+K  F+  +S+E+R+PL  IIGF++++   +LG ++  +   Y+  I
Sbjct: 1077 LLTTKAAAEGANELKTQFLAKISHEIRTPLNAIIGFSEMMIEERLGRIDNDRYRGYLRDI 1136

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + S   +L+LVND+LD+  ++AG M++++  + LN  ++E    +  + + + I I+   
Sbjct: 1137 NRSGAHVLDLVNDLLDITKIEAGKMEMDFDAVDLNRTVSENVAILQAEANADRIIIRTSL 1196

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK-AARDNGDFIFSVKNNGSSIPE 732
               +   VAD++ + QI   ++SN++ F+  G  VI+     D+G+ +  V++ G  +  
Sbjct: 1197 STVVPKVVADQRSMRQIVLNLVSNSIKFTKSGGQVIVSTVYEDSGEVVLRVRDTGVGMSA 1256

Query: 733  DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +     F   A       +G GLGL + ++ +  +     I S+ +  T +    P 
Sbjct: 1257 SEMEQALQPFRQTASAAVSATKGTGLGLPLTKALVEANRADFHIESTPDEGTLVEIHFPV 1316

Query: 791  K 791
            +
Sbjct: 1317 Q 1317


>gi|229165941|ref|ZP_04293706.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
 gi|228617494|gb|EEK74554.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
          Length = 883

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 123/251 (49%), Gaps = 15/251 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L EK   + ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I
Sbjct: 468 ELEEKASEILRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVI 527

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   +  
Sbjct: 528 HSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAANMHQNFLHIAAQKNVEFTIED 587

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA--------ARDNGDFI 720
           SD     F  D +R+ QI   +LSNA  F+ KGS  +    ++         +  N    
Sbjct: 588 SDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDPIETTNLSNEMQSISNDWIT 647

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SVK+ G  I  +  + +F  F         +  G GLGLSI + F  L GG +++ S+ 
Sbjct: 648 ISVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNV 707

Query: 779 EGVTTINCRIP 789
              +T    IP
Sbjct: 708 GEGSTFTVYIP 718


>gi|317489211|ref|ZP_07947728.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325832247|ref|ZP_08165246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|316911612|gb|EFV33204.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325486083|gb|EGC88537.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 554

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 173/384 (45%), Gaps = 34/384 (8%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           E    +  ++    + +  +   +F PD   ++  +P    L       +    +IR ++
Sbjct: 33  ELAIESREQLFSMLVRNADDIYVMFSPDAYEVEYVSPNVEKLLGVSVEAVK--NNIRALS 90

Query: 485 ATCSRYYNESDGWDL-----------FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            + +   ++    D+           F   I +   ER+  Q TL   S   ++  ++ L
Sbjct: 91  DSAADPSSDPRIDDIASLEEGECLQVFRERIQARTGERRWYQETLYRESIKGVDKYVLVL 150

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +            S+  E+AL    +  R ++E K+ F+ ++S+++R+P+  I+G T +
Sbjct: 151 SD-----RTNEQKGSLMLEQAL----DIARSSNEAKSQFLANMSHDIRTPINAIVGMTKI 201

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            + S  G  + K +  ++ I+ASS  LL L+ND+LD++ +++G M+L      ++D++  
Sbjct: 202 ARES--GEASEKIAGCLDAITASSRHLLELINDVLDMSRIESGQMELQERRFDIDDVVGG 259

Query: 654 VKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V+  I  +    +  +++     K  +F  D  R+ QI   + SNA+ ++ +G T+ L  
Sbjct: 260 VEAIIRPQAQAKSQELRIDCSKMKHKAFSGDELRISQILLNLASNAVKYTQEGGTIALVV 319

Query: 713 ARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESF 764
                         F++ +NG  +  +  + +F+ F  +      + +G GLG+SI ++ 
Sbjct: 320 QELAKTRPSYASVAFTITDNGMGMSPEFVERIFDPFERSEEVSIARIQGTGLGMSITKAL 379

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I+  GG V + S     ++    +
Sbjct: 380 IDAMGGIVEVDSEKGRGSSFRVTL 403


>gi|153216224|ref|ZP_01950328.1| sensor histidine kinase FexB [Vibrio cholerae 1587]
 gi|124114411|gb|EAY33231.1| sensor histidine kinase FexB [Vibrio cholerae 1587]
          Length = 604

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|41016068|dbj|BAD07400.1| histidine kinase [Cochliobolus heterostrophus]
          Length = 682

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 26/279 (9%)

Query: 525 VLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +LE S+    + +T   T  ++ D    E+ L E  +        K+ F+ ++S+E+R+P
Sbjct: 47  LLEKSLAETSDEETWYGTATDINDHKLLEQTLKETMD-------AKSKFLSNMSHEIRTP 99

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I G  + L  S    LN++Q ++V  I AS+  LLNL+NDILDL+ V+AG++KL+  
Sbjct: 100 LNGISGMVNFLLDSV---LNTEQLEHVNIIKASTDSLLNLINDILDLSKVEAGMIKLSME 156

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
            + L  LL EV         +  + +  + D  +      D+ R+ Q+   ++ NA+ F+
Sbjct: 157 WLHLPSLLEEVNDLNMGLAIQKGLELNYLVDEGVPAEVKGDKFRIRQVLLNVVGNAIKFT 216

Query: 703 SKGSTVILK-----------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRG 749
             G  + ++              +     F V + G    +   K +F RF     +   
Sbjct: 217 EHGE-IFIRCKLQPSDRSRPLKENETMIRFEVVDTGQGFTDAEAKYLFKRFSQIDASSTR 275

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           Q  G GLGL+I   F+ LHGG +   S+    +T    I
Sbjct: 276 QHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 314


>gi|226942490|ref|YP_002797563.1| hybrid sensory histidine protein kinase [Azotobacter vinelandii DJ]
 gi|226717417|gb|ACO76588.1| hybrid sensory histidine protein kinase [Azotobacter vinelandii DJ]
          Length = 957

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/578 (16%), Positives = 192/578 (33%), Gaps = 49/578 (8%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
            SY +   +E    +      R          +  +  +         +L          
Sbjct: 293 HSYDEAIHSELFKPEDFNLRRRPATAGLAAAIVERNEGMMTVEFRGRPSLVAW------- 345

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV-AIAIFDQNRYLQFHNRSFVEL 338
             +  +       +D ++     + L   YE +  L +  + +F    YL F    F  +
Sbjct: 346 TTIPQTGWHLLTVVDEARVFAETNSLASQYERIGYLMIAGLLVF----YLVF----FGCM 397

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           W      L     ++ LL  +   +++ E++    W+                       
Sbjct: 398 W------LRARHLSERLLRPIDGISRMMEEIGGGNWR----------------------- 428

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDL-ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
              V              E +  Q++  E +     +     +D  +E +       R  
Sbjct: 429 PARVSSRIVELDAMAGHAERMGEQLEQSERQSQRTQERLELVLDSATESLWEQDLHSRRI 488

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
                F   +      +     + ++          S       + +   D   +   G+
Sbjct: 489 SLRGRFCKRFGLPAGPIDHEAFMAHVHPEDVPRVEASFRLADSRSGLCEADFRFRDSHGS 548

Query: 518 LELLSDSVLEYSIIPLPNAQTM--LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
              L          P      +   T V++    R E  L       + A + K+ F+  
Sbjct: 549 YHWLLGRGRVVERDPATGQAVLLAGTHVDIDTLKRTEADLRLAIGEAQAASQAKSRFISS 608

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+PL  I GF  LL+        +++  Y++ +  +S  L  LV+D+LD + +  
Sbjct: 609 ISHELRTPLNAIYGFAQLLRLGYEARGETQEVAYLDELLRASRHLNQLVDDVLDWSNLQT 668

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
               L   ++ +  L+ E  + +   +    +R+ +    K     AD +RL Q+   +L
Sbjct: 669 AKFSLEMQSVEVAGLMAECAEMVRLDVETRGLRLDLEPPDKGLLVRADPRRLRQVLLNLL 728

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGV 754
           SNA+ ++S    + L    ++G     V++ G  I E     +F  F          +G 
Sbjct: 729 SNAIKYNSPAGRIALTHQAESGRIRLIVEDTGPGIDESRQVQLFEPFQRLGRENSTIQGT 788

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G+GLS+   F  L GG + +SS     +     +P  +
Sbjct: 789 GIGLSLCRQFAVLMGGRMGMSSEPGTGSRFWIDLPLVQ 826


>gi|163938904|ref|YP_001643788.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
 gi|163861101|gb|ABY42160.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
          Length = 896

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTTDLEI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   + ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 478 TKSELEEKASEILRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   + Q+      + N+   
Sbjct: 538 TVIHSSGKDLLALINDILDLSKVEAGKLDVIFEATNISDMAANMHQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA--------ARDNG 717
           +     + + F  D +R+ QI   +LSNA  F+ KGS  +    ++         +  N 
Sbjct: 598 IEDSDIIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLYFDPIETTNLSNEMQSISND 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I  +  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WITISVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNVGEGSTFTVYIP 731


>gi|86147383|ref|ZP_01065696.1| sensor histidine kinase FexB [Vibrio sp. MED222]
 gi|85834811|gb|EAQ52956.1| sensor histidine kinase FexB [Vibrio sp. MED222]
          Length = 795

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 151/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L    E  L   T  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNEDGVFSGCNRAVEELTGKTEKELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   E+D          ++D   +   G       S  E   +P  +     
Sbjct: 202 DVYSKEVAQQVVETDKKVFADNQALTYDQWLEYPDG-----RKSYFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER   E  E+L KA   K +F+  +S+ELR+PL  IIG + +L  S+  
Sbjct: 257 LGLVGFGRDITER--KEHQESLEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQ-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q + ++ I  S+  L N+ NDI+D+   D   ++L  + I   D + E++   A 
Sbjct: 313 -LTTEQRKQMQTIKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVVEIESISAL 371

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L S    D  RL Q+   ++SNAM F+  G  V  + A  D   
Sbjct: 372 MAEQKGLRFDLERLSDLPSAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSAEIDGDF 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++ +  IN+  GH+ 
Sbjct: 432 ANITMEVEDTGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLINMMDGHIE 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VTSEEGFGSTFTISI 506



 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R++ G     N + ++ T   G  
Sbjct: 135 DLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNEDGVFSGCNRAVEELT---GKT 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVL--- 283
            ++ +G +   ++ +E+ ++++ +        +    +       G    +++ +V    
Sbjct: 192 EKELVGLTPWDVYSKEVAQQVVETDKKVFADNQALTYDQWLEYPDGRKSYFELRKVPFYS 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKEHQESLEK 278


>gi|261253198|ref|ZP_05945771.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891]
 gi|260936589|gb|EEX92578.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891]
          Length = 565

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 124/239 (51%), Gaps = 7/239 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E      +++     FV  +++ELR+PL  ++G  +LL  ++   L+ +Q   +  ++ 
Sbjct: 192 QEARSRAEESERSTKEFVAMINHELRTPLNGLLGSAELLDGTE---LDEEQRTLLTNLTH 248

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S  +L +++NDILD + ++AG+M+L  ST  +++L N +      +  E  I   +   G
Sbjct: 249 SGDLLRHIINDILDFSKMNAGMMELIPSTFQMSELRNMIHGIFEPRAREKGIEFTITESG 308

Query: 676 KLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           +L + F+ D +R+ QI   ++ NA+ F+S+GS V + A    G    SV + G  I E+ 
Sbjct: 309 ELPTSFIGDFERIGQILVNLVGNAVKFTSEGS-VTVTARWSAGSLTMSVSDTGVGIAEEA 367

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            K +++ FV      +R   G GLGL+I ++ + L  G +++ S     +     +P K
Sbjct: 368 KKELYSPFVQADRTAKRHFEGTGLGLAICKNLVELMSGTIALESEVGKGSCFEVTLPLK 426


>gi|253567906|ref|ZP_04845317.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251841979|gb|EES70059.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 641

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 6/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     G+   +Q
Sbjct: 397 DLLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GNTEEEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L  +V  S++    ++ 
Sbjct: 455 QTYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCRQVVASVSVS-RQSG 513

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKN 725
            +   +SD +      D QR+ Q+   ++SNA  F+ KG  T+      +    +FSV +
Sbjct: 514 NQFLFVSDYESFRMTTDIQRMQQVIINLMSNADKFTRKGQITLEFSVNEETEMAVFSVTD 573

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP++  K VF RF       Q  G GLGLSI +  ++   G + I S   G     
Sbjct: 574 TGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGDIWIDSEYTGGARFI 631

Query: 786 CRIPSK 791
              P K
Sbjct: 632 FSHPLK 637


>gi|330446361|ref|ZP_08310013.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490552|dbj|GAA04510.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 971

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 119/237 (50%), Gaps = 7/237 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   KA+  K+SF+  +S+E+R+P+  ++G   LL  ++   L  +Q +Y++ I+ S  
Sbjct: 460 RDEAEKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQ---LTPQQKRYLDVINRSGE 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL- 677
            LL+++NDILD + ++AG + +  S   ++ ++ +V   +  +     I ++     ++ 
Sbjct: 517 TLLDILNDILDYSKIEAGHLDIRPSDFSVSRMVTDVANMLEGRALAKRIGLEYHIAPEVE 576

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD-NGDFIFSVKNNGSSIPEDMC 735
           G +  D  R+ Q+   ++ NA+ F+  G   + ++   D   + +FSV++ G  I E+  
Sbjct: 577 GMWYGDESRIRQVLVNLVGNAIKFTDNGKVSITVEPHPDMPDELLFSVRDTGIGIDEEEQ 636

Query: 736 KSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +FN F    A R    G GLGL+I +  +    G + + S     +     +P +
Sbjct: 637 NLLFNAFKQAEAGRKSIEGTGLGLAISKHIVAAMDGEIGLDSVVGEGSCFWFALPLE 693


>gi|217970259|ref|YP_002355493.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507586|gb|ACK54597.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 878

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 3/250 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R    L +  +   KA++ K  F+  +S+ELR+PL  I+GF  LL+  +   L+ 
Sbjct: 483 FKEQQRFTEELQQARDQAEKANQAKTEFLSSMSHELRTPLNAILGFAQLLQNGRQ-PLSE 541

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q + VE I+ S   LL L+N++LDLA +++G ++++   ++ +D++ +  Q +     +
Sbjct: 542 RQLRQVEQIARSGRHLLQLINEVLDLARIESGRLQVSLEPMLAHDVIEDAAQIVLPLAEQ 601

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             I + +         F  D  R+ QI   +L NA+ ++  G  V ++     G     V
Sbjct: 602 QGIALALPPAQACALRFTGDYTRVKQILINLLGNAIKYNRPGGAVEVRCEAVGGRCRIGV 661

Query: 724 KNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  IP      +F  F    A  G   G G+GL++    ++L  G + + S +   +
Sbjct: 662 VDTGIGIPASRLGELFQPFNRLGAESGSIEGTGVGLALTRKLVDLMHGELGVHSREGEGS 721

Query: 783 TINCRIPSKE 792
                +P  E
Sbjct: 722 AFWFELPLCE 731


>gi|254412242|ref|ZP_05026017.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181208|gb|EDX76197.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 365

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 127/263 (48%), Gaps = 1/263 (0%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y + P    +   T        ++E  L       ++ +++K  F+   S+E R+PLT I
Sbjct: 103 YILKPFQEDELQTTIEIALSRHQSEERLRLALAKEKELNQLKTQFIAITSHEFRTPLTTI 162

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
               DLL+     ++++K+ +++  I  S   ++ L++D+L +   ++G ++L    I L
Sbjct: 163 SSSNDLLERYCRDTMDAKKEKHLRQIKLSVNQMIQLLDDVLLIGRAESGKVELQLIPIDL 222

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
               + + + I T   +   +I     G+      D   L  I S +L+NA+ +S +G  
Sbjct: 223 VKFCHNLVEEIQTNAGDK-YQIIFTHQGEFTETCLDINLLRPILSNLLANAVKYSPQGGV 281

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           V      ++    F +K++G  IP +  K +F  F   ++ G+ +G GLGLSIV+  +++
Sbjct: 282 VTFHLFSNDTTITFQIKDSGIGIPPEAQKYLFESFHRASNVGKIKGTGLGLSIVKRCVDI 341

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           HGG +S+ S     TT   ++P 
Sbjct: 342 HGGEISVDSEVNVGTTFTVKLPL 364


>gi|255745407|ref|ZP_05419356.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262149050|ref|ZP_06028193.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|262169820|ref|ZP_06037511.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|255737237|gb|EET92633.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262022054|gb|EEY40764.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|262031150|gb|EEY49771.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 734

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 174/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 147 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 202

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 203 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 260

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 261 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 320

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 321 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 380

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 381 LKDE---LTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 437

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 438 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 496

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 497 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 556

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +    R
Sbjct: 557 MNGTVLVQSEVGQGSCFKVR 576


>gi|186681986|ref|YP_001865182.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186464438|gb|ACC80239.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 595

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 18/256 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L    +   +A  +K+ F+ +VS+E+R+PL  +IGF  L+    +     +Q+Q++  
Sbjct: 316 EELEVARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLILEG-MADDPEEQNQFLAE 374

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S  LLN++NDILD+A ++AG M+L Y+ + LN+L ++V+  +  +    N+  ++ 
Sbjct: 375 AHNLSIHLLNIINDILDIAKIEAGKMELTYAPVKLNELFSDVESFMRPQAEMRNLSFRMQ 434

Query: 673 SDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKA-----------ARDNGDF 719
                   +   + QRLLQ+   +L NA+ F+ +G  V + A            +  G  
Sbjct: 435 MPATSDEIIVQSNYQRLLQVMLNLLGNAIKFTHEGG-VTVSADLVLKKSKLQDQQFPGLV 493

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  +  D    +F  F  V  +   Q  G GLGL+I +  +   GG V   S 
Sbjct: 494 RVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLVEAMGGEVHFYSL 553

Query: 778 DEG-VTTINCRIPSKE 792
            EG  +T+   +P  +
Sbjct: 554 GEGLGSTVTFTVPLYQ 569


>gi|113477573|ref|YP_723634.1| periplasmic sensor hybrid histidine kinase [Trichodesmium
           erythraeum IMS101]
 gi|110168621|gb|ABG53161.1| periplasmic sensor hybrid histidine kinase [Trichodesmium
           erythraeum IMS101]
          Length = 750

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 21/252 (8%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +K +    A++ K+ F+ ++S+ELR+PL  I+G+T++L  S+  +   K+ + ++ I 
Sbjct: 256 LEQKRQVADAANKAKSEFLANMSHELRTPLNGILGYTEILSRSE--AWGEKEKKGIDIIH 313

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
              + LL L+NDILD++ ++A  ++L    I L   L  + + I  +  +  +    + D
Sbjct: 314 QCGSHLLTLINDILDISKIEARKLELQPQAIHLPSFLQGIGEIICIRTEKKGVDFVYLPD 373

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----------------RDNG 717
             L    V D +RL Q+   +L NA  F+ KG  V  K                  +DN 
Sbjct: 374 ANLPEGIVTDPKRLRQVLINLLGNAAKFTEKG-QVTFKVRIIDSMAEQKKDKAQIPQDNV 432

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              F +K+ G  I  D  + +F  F      +    G GLGL+I ++ ++L G ++ + S
Sbjct: 433 RLSFQIKDTGIGISPDSLEKIFQPFEQVGEGKRHSEGTGLGLTITDNILSLMGSNIQVKS 492

Query: 777 SDEGVTTINCRI 788
                +T    I
Sbjct: 493 ELGVGSTFTFEI 504


>gi|320161971|ref|YP_004175196.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319995825|dbj|BAJ64596.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1349

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 152/316 (48%), Gaps = 14/316 (4%)

Query: 488  SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
             R   E DG  L  +  +      +    T+ ++   +LE +     + + M     ++D
Sbjct: 1036 RRSLTEEDGARLLRSARSQILIPIRRETNTIGVI---LLESTSPEQASEEIMDFLSRLSD 1092

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                     +  +A++ A+  K+ FV  V++EL++P+T++ G+T+LL    +G +N  Q+
Sbjct: 1093 HASIAIFNAQLYQAVQNANLAKSEFVSFVAHELKNPMTSVKGYTELLAAGAVGPVNEAQA 1152

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++  I A+   +  LV+D+ DL+ ++ G ++L +  + L +++  V +S   ++ E   
Sbjct: 1153 NFLNTIRANIERMNTLVSDLNDLSKIEVGRLRLEFKAVSLAEVVEGVVRSTRRQIDEKKQ 1212

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-------- 719
             +++     L    ADR RL Q+   ++SNA  ++ +G  +++ A R    +        
Sbjct: 1213 TLEIAIPADLPPAWADRTRLEQVLVNLVSNAHKYTPQGGHILVAAERAKNVWNPEGVPEV 1272

Query: 720  -IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
                VK++G  I E+  K +F +F  +     R   G GLGL+I +S + + GG++   S
Sbjct: 1273 IHVWVKDDGIGISEEDQKKIFQKFFRSEDPKTREVPGTGLGLNITKSLVEMQGGNIWFES 1332

Query: 777  SDEGVTTINCRIPSKE 792
                 TT +  +P  +
Sbjct: 1333 EFRKGTTFHFTVPISQ 1348


>gi|282899118|ref|ZP_06307099.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
 gi|281196034|gb|EFA70950.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
          Length = 1068

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 125/262 (47%), Gaps = 10/262 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++   +VT+  +  + L  KN  L + + +K+ F+  +S+EL++PLT ++G + LL   
Sbjct: 342 WLVLATDVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDK 401

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            LG LN +Q++Y   I  S   L+++VNDILDL  ++ G M+L  S + + ++ +     
Sbjct: 402 NLGELNERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALVE 461

Query: 658 IATKMHENN--------IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
             +  ++              +  +  L   VAD  RL Q+   +L NA  F+     V 
Sbjct: 462 ARSVHNQTGRKGESLPSHEFSLSIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVG 521

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           L+  R  G   F+V + G  IP+     +F +F    +    Q  G GLGL +  +   L
Sbjct: 522 LRVNRWEGWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARL 581

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG VS  S +   +     +P
Sbjct: 582 HGGDVSFLSREGKGSQFTLLLP 603


>gi|254410345|ref|ZP_05024124.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182551|gb|EDX77536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 526

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/464 (19%), Positives = 179/464 (38%), Gaps = 57/464 (12%)

Query: 375 KENIFSVYKSSETHKDTWHLP--------NGQTLHVIVTSNPRGGTIWMFEN----LTVQ 422
           K       +++E  ++ + +P           TL     + P G  +  F      +T++
Sbjct: 59  KHRDMDGIEAAEQIRNQFKIPVIYLTAHSEAATLARAKVTEPFGYIVKPFNQRDLGITIE 118

Query: 423 VDL-----ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + L     + +     +     +D   + V      G I   NP  +++        +  
Sbjct: 119 IALYKHQTQQQLIEREEFLSTILDSTHDAVVATDATGGITYMNPIAQTITGWSSTE-AMD 177

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             +  +     + ++E+    +   +I     E    QG   LL     + +  P+ +  
Sbjct: 178 KPVTEVV----QIFDEATNTVVENPVIRLLRGEPVPNQGHNRLLIAR--DGTKTPIVDHV 231

Query: 538 TMLTFVNVT--------------------------------DSVRAERALTEKNEALRKA 565
           +++   +                                  +  +AE  + +     ++ 
Sbjct: 232 SLMRPNDDDIKGAVLVVCNISERRQAQALELERVKLATEVAERQKAEAEIRKALTTEQEL 291

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            E+K+  V  +S+E R+PL  I+  T+LLK         KQ  Y++ I      +  LV 
Sbjct: 292 SELKSRVVAMISHEYRTPLAVILTSTELLKRYSTQLSQEKQQTYLDRIQMGVKQMAQLVE 351

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           ++L      AG ++ N   + + D   ++       + +    +        G    D+Q
Sbjct: 352 EVLTFNKAQAGELQFNPEPLNMEDFCLQLVDEQRLMVGDR-YTLTYNPQLSSGEAELDKQ 410

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            L  I + +LSNA+ +S+KG+TV L   R++   I  V++ G  IPE     +F+ F   
Sbjct: 411 MLRHIVTNLLSNAIKYSAKGTTVSLSLRREDDTLIIQVQDQGIGIPESEQPRLFSPFFRA 470

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++     G G+GLSIV++ ++LH G ++I+S     TT+   +P
Sbjct: 471 SNVSTIAGTGMGLSIVKNCVDLHQGQIAIASEVGKGTTVTVTLP 514


>gi|17228884|ref|NP_485432.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130736|dbj|BAB73346.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 811

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 153/367 (41%), Gaps = 33/367 (8%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-- 501
           S+G  +  PD  +        ++ K   + L    H  ++ A   R  N+  G +L A  
Sbjct: 213 SQGEVIVHPDSTL------MSTIEKPAPSLLKINDH--SLQAIAQRMVNKQQGIELMAID 264

Query: 502 ---AIITSFDDERKSLQGTLELLSDSV---LEY-SIIPLPNAQTMLTFVNVTDSVRA--E 552
                I     +  +    L +  +++   L++  +I L      +T + V   V+A  +
Sbjct: 265 GKQKYIAYIPLKAANWSVALVIPRENIESRLQFLDLIALIVGGLTITMITVLWRVQAFEQ 324

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  EA   A+  K+ F+ ++S+ELR+PL  I+G   +L+ S   +L  ++  ++  
Sbjct: 325 AQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRS--STLPEQEQHHINI 382

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I    + LL L+NDILDLA ++A  ++L+   +     +  + +    +  + +I     
Sbjct: 383 IEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFVYE 442

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---------DFIFS 722
               L      D +RL Q+   +L NA+ F+  G  V LK                  + 
Sbjct: 443 PASNLPIWLHIDAKRLRQVLLNLLGNAIKFTDHG-QVKLKVETIEESSTQKPVKHRIRYC 501

Query: 723 VKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++ G  I +     +F  F      + Q  G GLGL+I    + + G  + ++S     
Sbjct: 502 IEDTGIGITDAELSKIFLPFEQVGEKKRQTEGTGLGLAITRQLVQMMGSDIHVTSQVGHG 561

Query: 782 TTINCRI 788
           +T    +
Sbjct: 562 STFWFEL 568


>gi|329735733|gb|EGG72014.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU028]
          Length = 610

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 155/399 (38%), Gaps = 31/399 (7%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+G+      GR+
Sbjct: 228 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRV 287

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +++N     +    +  +     +  +       ++  +  +   + +   ++E    +G
Sbjct: 288 RIANDMALKMLGLAKEDVIGYYMLGVL--NLENEFSLEEIQENSDSFLLDINEE----EG 341

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  ++     +S I             + D    ++            +  +  FV +V
Sbjct: 342 IIARVN-----FSTIVQETGFVTGYIAVLHDVTEQQQ-----------VERERREFVANV 385

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+             ++      +  ++ LVND+L L+ +D  
Sbjct: 386 SHELRTPLTSMNSYIEALEEGAWQD-KELAPSFLSVTREETERMIRLVNDLLQLSKMDNE 444

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             ++    I  N  +N++           +         +      D  ++ Q+F  +++
Sbjct: 445 SDQITKEIIDFNMFINKIINRHEMAA--KDTTFVREIPQQTIFAEIDPDKMTQVFDNVIT 502

Query: 697 NAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NAM +S     V     ++         +K+NG  IP +    +F+RF        R   
Sbjct: 503 NAMKYSRGEKCVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMG 562

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 563 GTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 601


>gi|313106625|ref|ZP_07792850.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310879352|gb|EFQ37946.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 651

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L    E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++      +Q
Sbjct: 244 EQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQ---TREQ 300

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    + S+  LL ++NDILD + ++ G ++L      L +L+            +  
Sbjct: 301 AEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRG 360

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++     L       D  R+ QI   +L NA+ F+ +G+  + L+    + D +   
Sbjct: 361 LALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLT 420

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  I  +  + +F+ F         +  G GLGL+I  +     GG +   S +
Sbjct: 421 CAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKE 480

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 481 GSGSTFTLEIPL 492


>gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
 gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
          Length = 1128

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 3/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ AD++K+ F+   S+ELR+PL  ++G  + L +   G++ + Q   ++ 
Sbjct: 444 QIIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGANGAIPASQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +  +  +    IRI   
Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSSHLLGNKTIRIINQ 563

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L    AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP 
Sbjct: 564 VPADLKVVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISANVVDDHVRVQVVDTGQGIPA 622

Query: 733 DMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 623 EHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 682


>gi|317154224|ref|YP_004122272.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944475|gb|ADU63526.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 881

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/424 (22%), Positives = 176/424 (41%), Gaps = 53/424 (12%)

Query: 415 MFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           M   +T  + DLE +         + ID +SEG  ++    R+ ++N   + +    E  
Sbjct: 259 MAHRITALINDLEGRAAMASDRLVDAIDSISEGFLLYDNKERLIIANRRAKEVAGCGEGF 318

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-----ELLSD-SVLE 527
             PG  +  I    SR   ES  +        ++ +ER     T+     ELLSD S ++
Sbjct: 319 FKPGLTVEQI----SRLGAESGLFVSALGREDAWVEERLKCHRTISPPVEELLSDGSWVQ 374

Query: 528 YSIIPLPNAQTMLTFVNVTDSVR----------------AER---------ALTEKNEAL 562
                    +T++ F +VT+  R                 ER          L + N  L
Sbjct: 375 VKTYRSGRGETVVVFTDVTERKRKAEVLATMNSDLEDLVRERTKVLVEKAMELRQANRRL 434

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS------------KLGSLNSKQSQYV 610
            + DE+K++F+  VS+ELR+PLT+++GF+ +++              +   L  +    +
Sbjct: 435 MELDELKSAFLSSVSHELRTPLTSLLGFSKIIRRDFTRTFMHLADTAQAQRLGERIQSNL 494

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669
           + I +    L  L+ND+LDL+ +++G     ++ I L   +N    + +  +     +R+
Sbjct: 495 DIIGSEGERLTRLINDVLDLSRIESGQEDWRFTEIDLAGCVNRAVSAASGLLSPKPQVRL 554

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +     +    AD+ R+ Q+   +LSNA+ F+  G   +     D G     V++ G  
Sbjct: 555 TIRRMDPVPLVHADQDRIHQVLMNLLSNAVKFTDFGEVAVDLYLDDQGMARIRVEDTGRG 614

Query: 730 IPEDMCKSVFNRFVSNAH----RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           I     + +F++F           +  G GLGL+I    +  + G +   S     T +N
Sbjct: 615 IKARYLEQIFDKFHQVHRGDTLTEKPAGTGLGLAISRQIVEHYHGRIWAESKLGRGTVMN 674

Query: 786 CRIP 789
             +P
Sbjct: 675 VALP 678



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 73/206 (35%), Gaps = 17/206 (8%)

Query: 276 SYKIVRVLNS-FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
           +++I  ++N   G A +A D               + + +++    ++D    L   NR 
Sbjct: 260 AHRITALINDLEGRAAMASD------------RLVDAIDSISEGFLLYDNKERLIIANRR 307

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWH 393
             E+      F     + +++      +      L  +  W E     +++     +   
Sbjct: 308 AKEVAGCGEGFFKPGLTVEQISRLGAESGLFVSALGREDAWVEERLKCHRTISPPVEEL- 366

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           L +G  + V    + RG T+ +F ++T +        T+     + +   ++   +    
Sbjct: 367 LSDGSWVQVKTYRSGRGETVVVFTDVTERKRKAEVLATMNSDLEDLVRERTK--VLVEKA 424

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTH 479
             ++ +N     L + +   LS  +H
Sbjct: 425 MELRQANRRLMELDELKSAFLSSVSH 450


>gi|325679716|ref|ZP_08159290.1| HDIG domain protein [Ruminococcus albus 8]
 gi|324108531|gb|EGC02773.1| HDIG domain protein [Ruminococcus albus 8]
          Length = 1203

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/365 (21%), Positives = 157/365 (43%), Gaps = 34/365 (9%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +TL       +D LSEG+     DGR++  N   ++L+       +             
Sbjct: 225 LDTLELTHEYVVDKLSEGIIAVDTDGRVRYFNEPAKALYPQLTETPA------ETVEVIE 278

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           +  +E    ++   I T   +E       LE   DS             ++   V+ T+ 
Sbjct: 279 QAISEGQTIEIADRIYTPCVNE-------LEFEGDSF-----------GSLYMLVDDTEH 320

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +    L E+ +   +A++ K++F+  +S+E+R+P+  ++G  +++      S   +   
Sbjct: 321 YKYMEQLKEQRQLADRANKAKSAFLASMSHEIRTPINAVLGMDEMILRE---SSERQIIG 377

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E I  +   LL+L+NDILD + V+ G M+L  +   L   +N++   +  +  +  ++
Sbjct: 378 YAEDIRTAGRTLLSLINDILDFSKVEQGKMELVPTQYELGSAINDLVNMVRPRADKKGLK 437

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSV 723
            +V  D K+      D  R+ Q    +L+NA+ ++ KGS         +G+      F++
Sbjct: 438 FEVKVDPKMPHLLYGDEIRVKQCALNLLTNAVKYTEKGSVRFEVGFEKSGEKSIKLRFTI 497

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G+ I E+  + +F+ F            G GLG+SI    + L G  + + S+    
Sbjct: 498 ADTGAGIREEDMEKLFSPFSRIEEGKNRSIEGTGLGMSITVQLLELMGSKLDVDSTYGKG 557

Query: 782 TTINC 786
           +T + 
Sbjct: 558 STFSF 562


>gi|256423935|ref|YP_003124588.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256038843|gb|ACU62387.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 1016

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/543 (20%), Positives = 213/543 (39%), Gaps = 61/543 (11%)

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHN-RSFVELWEIDLA 344
             E  IA+ V + ++      H  E+L +        ++N    F N    +   +++  
Sbjct: 82  GQEKAIALLVQEIVSHITDHYHYEELLDS--------ERNFRAFFENSHGLMCTHDLEGR 133

Query: 345 FLATNPSNDELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHL-----PNG 397
            L+ N +   +L +     K     +     ++  + +  K   T      L      +G
Sbjct: 134 LLSVNNACAAILGYTCEEMKDMTLADIVPAQYENELHAYLKKIGTEGKAHGLMITIHKDG 193

Query: 398 QTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG--VAV 449
               V+  +            I    ++T +  LE      +K   E ++  S+   +  
Sbjct: 194 TMGSVLFNNVLFRNLKGESYVIGNAIDVTERQVLERD----LKRTREILERTSQMSRIGG 249

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           +  D    L N        T+     PG   +   AT   +Y E D  +  +  +    +
Sbjct: 250 WEAD----LVNRELFWSDVTKAIHEVPGN-FQPTMATAIGFYKEGDNREAISEALRISVE 304

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQT--------MLTFVNVTDSVRAERALTEKNEA 561
             ++    L++++    E  +  + NA+           TF +++ +  AE  L  +   
Sbjct: 305 TGEAWDLQLQIITAKGQEKWVRAIGNAEFENGKCKRLYGTFQDISATKEAEHQLILQKSN 364

Query: 562 LRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  A       +  K+ F+ ++S+E+R+PL  +IGFT+L+  +    LN  Q QY+  ++
Sbjct: 365 LAAAKQQAEQANMAKSEFLANMSHEIRTPLNGVIGFTELVLKT---DLNETQHQYLSIVN 421

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL+++NDILD + +++G ++L+     L +  ++V   ++ +     + + +   
Sbjct: 422 QSANALLSIINDILDFSKIESGKLELDIDKYDLYEFSSQVSDIVSYQAQHKGLEMLLNVS 481

Query: 675 GKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNG 727
            +L  F   D  RL QI   +L NA+ F+S G  + LK         D     F V++ G
Sbjct: 482 TQLPRFAWFDEVRLKQILINLLGNAVKFTSNGE-IELKVHPLEFLEDDKAKIRFEVRDTG 540

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +    +F  F            G GLGL+I    + L G  + I S     +T  
Sbjct: 541 IGIKPEKQLKIFEAFRQEDASTTKKYGGTGLGLTISNKLLALMGSELHIESGVSQGSTFY 600

Query: 786 CRI 788
             I
Sbjct: 601 FDI 603



 Score = 44.5 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 28/264 (10%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA--IGESRK 242
            ++L +    F+  F++   L+   D  G +L  N +            +          
Sbjct: 104 YEELLDSERNFRAFFENSHGLMCTHDLEGRLLSVNNACAAILGYTCEEMKDMTLADIVPA 163

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGN--NKSYKIVRVLNSFGE---AGIAIDVSK 297
            ++ E+   +       K     ++  + G   +  +  V   N  GE    G AIDV++
Sbjct: 164 QYENELHAYLKKIGTEGKAHGLMITIHKDGTMGSVLFNNVLFRNLKGESYVIGNAIDVTE 223

Query: 298 EITVNDQLTHTYEILHNLTVAIAI--FDQN--RYLQFHNRSFVELWEIDLAFLATNPSND 353
              +   L  T EIL   +    I  ++ +      F +     + E+   F    P+  
Sbjct: 224 RQVLERDLKRTREILERTSQMSRIGGWEADLVNRELFWSDVTKAIHEVPGNF---QPTMA 280

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSNPR-- 409
             + F +      E  N +   E +    ++ E       +    GQ   V    N    
Sbjct: 281 TAIGFYK------EGDNREAISEALRISVETGEAWDLQLQIITAKGQEKWVRAIGNAEFE 334

Query: 410 ----GGTIWMFENLTVQVDLETKY 429
                     F++++   + E + 
Sbjct: 335 NGKCKRLYGTFQDISATKEAEHQL 358


>gi|291545377|emb|CBL18485.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 799

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 159/403 (39%), Gaps = 31/403 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEE 471
           +    ++T    +E+  +  +     +++ L + +  +        L N  +       +
Sbjct: 387 MIFLRDITE-TKVESARHLQMAADNASMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQ 445

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---------------QG 516
               P     +        Y   +  +    +I   D+ RK L               + 
Sbjct: 446 MIYKPLGFYHDFQMQVLEKYKTLEPLEAIDILIAP-DNIRKKLKSENDIYKFEYCSLDEK 504

Query: 517 TLELLSDSVLEYSIIPLPNA--QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           T ++ S   LE+  + L      +M         + + +AL E   +   A+  K  F+ 
Sbjct: 505 TYKIASYIPLEWKNVKLEKVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLS 564

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+++R+P+  I+G T +           +  + +  I+ SS  LL L+N++LD+A ++
Sbjct: 565 NMSHDIRTPMNAIVGLTAI--AGANVESQDRVIECLGKITESSRHLLGLINEVLDMARIE 622

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSK 693
            G M L      L++L++ +       + E+     +  +  +  +   D  R+ Q+F  
Sbjct: 623 RGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVN 682

Query: 694 ILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           ++SNA+ ++  G   I             G + F++++NG  +  +  K +F  F     
Sbjct: 683 LMSNAIKYTPDGGNTIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFEPFSRADD 742

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R  G GLG++I  + +NL  G + + S+    T I   I
Sbjct: 743 HRTTRVQGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785


>gi|257867535|ref|ZP_05647188.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257873864|ref|ZP_05653517.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257801591|gb|EEV30521.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257808028|gb|EEV36850.1| histidine kinase [Enterococcus casseliflavus EC10]
          Length = 578

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/428 (20%), Positives = 170/428 (39%), Gaps = 37/428 (8%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKY 429
           + T ++    +       K     P+ Q + +  T         +   L+ Q+      Y
Sbjct: 178 FHTLRQRNRPIQTILPVVKKMITSPDQQAIIMQETPEHDE-LYQLINQLSEQMSQTYRAY 236

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     +  L  GV +   + ++ L NP  +                   A T  +
Sbjct: 237 AASEQQLYGLLSELMIGVFIINEENQLLLLNPTMQEQLGM------------ETAPTLPQ 284

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTD 547
            + E         +I  F+DE         L  +   VL+ ++      Q +    ++T 
Sbjct: 285 PFTEVIHDTQLIQLIYQFNDETPIFHAETTLSGERSKVLDVTLRSFQENQLIGISYDLTR 344

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+              ++  FV +VS+EL++P+T++IGFT+ L         + Q+
Sbjct: 345 IRQLEK--------------MQKDFVGNVSHELKTPVTSLIGFTETLLDGAKEDPETLQT 390

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++E I   +  L NL+ DI+ L+  D+   +     I  ++LL +V Q+      +  +
Sbjct: 391 -FLEIIQKDAYRLKNLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAGKKQL 448

Query: 668 RIKVISDGKLGSFVADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +   +G     ++ ++ LLQ I   ++ NA+ +S  G  + L  +  +   +F V++ 
Sbjct: 449 TFQF--EGPEPFILSTKKELLQPIVKNLVENAVTYSKPGGVITLSYSEQDDQLLFQVQDQ 506

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+  + +F RF            G GLGL+IV+ +  L GG + + S  +  +T 
Sbjct: 507 GIGIDEEDQERIFERFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGSTF 566

Query: 785 NCRIPSKE 792
              +P  E
Sbjct: 567 TVTLPLHE 574


>gi|229515211|ref|ZP_04404671.1| sensor histidine kinase [Vibrio cholerae TMA 21]
 gi|229347916|gb|EEO12875.1| sensor histidine kinase [Vibrio cholerae TMA 21]
          Length = 736

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 173/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           TV + LE   
Sbjct: 149 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATVDLSLE--- 204

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 205 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 262

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 263 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 322

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 323 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L  KQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 383 LKDE---LTPKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 498

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G V + S     +    +
Sbjct: 559 MNGTVLVQSEVGQGSCFKVK 578


>gi|221322739|ref|ZP_03604033.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 738

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/632 (17%), Positives = 242/632 (38%), Gaps = 48/632 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET-EGIV 232
           +  +++   +  ++ S +  +FK LFD     +   D+ G  + AN+S+ K+ E     +
Sbjct: 133 VMRDISSKKILEREFSMNEQLFKDLFDRAVDGIVLFDKDGGFIDANLSFCKSFEINHNEL 192

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST-LEHGNNKSYKIVRVLNSFGEAGI 291
              ++ E       +    +  +   +      +   L  G  K ++     N      +
Sbjct: 193 SHLSLYEFIDSGSRKDFDNIWKALNRKGKAKGELPVKLRSGVQKLFEFTITSNIISGFYM 252

Query: 292 AI--DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           +I  D++++ ++   L        EI  N   AI I+  +  +   N+S  +++E+ +  
Sbjct: 253 SIMRDITEKRSMELHLFKSEERFREIFENAMDAIIIWSNDGRIVKANQSACKIFELPMNL 312

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L       +L +FL  +     Q  +   K       +  E  +  + + NGQ   +  T
Sbjct: 313 LLKR----KLCDFLVDS-----QQKYSITKRKYAKYGEIRE--ELLFQMGNGQFKELEFT 361

Query: 406 SNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           S         + +  N++ +  +E +         +  +   +G  +F    RI  +NP 
Sbjct: 362 SKRTILENQHLTILRNVSDRKRMEKELRESELKFRKVFNGSMDGNVLFDNQYRIIDANPL 421

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              +       +   + +  I+A                A   +FD+    +   L    
Sbjct: 422 ASHILGLSHEEIKQHSLLDIISAYEIENLASP-------ARQINFDEMDNEIPFLLSSGD 474

Query: 523 DSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +  LE+S    +     +  F +VT+    E  L + +                +++E+R
Sbjct: 475 NRKLEFSFKRNIIQNMNLAIFKDVTERKELEERLRKSDTLHVVG-----ELAAGIAHEIR 529

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+T + GF  LLK    GS+    + Y   I++    + +++ + L LA   A    + 
Sbjct: 530 NPMTALKGFIQLLK----GSVEGDYALYFNVITSELKRIESIITEFLILAKPQA----IM 581

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           Y    +  ++ +    +  + + +N+++++     +     +  +L Q+F  IL NA++ 
Sbjct: 582 YEEKHVTQIMRDTIDLLNAQANLSNVQMQLDLIDDIPPIYCEPNQLKQVFINILKNAIEV 641

Query: 702 SSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
              G  + +     D    + S+K+ G  + ED  K +   F       + RG GLGL +
Sbjct: 642 MPDGGNIFVTIKALDQDHVLISLKDEGIGMTEDKLKRLGEPFY----TTKERGTGLGLMV 697

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               I  H G + + S +   T  +  +P ++
Sbjct: 698 SYKIIEEHQGEIMVESEEGKGTVFHITLPVRQ 729



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 102/277 (36%), Gaps = 22/277 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   +  +L     I++N   AI I D    +   N +   + ++D   L        +
Sbjct: 21  EENARLKKELNQHQVIVNNTLDAIFICDNEMRIVQANEATERMLQVDSEDLKKR----SV 76

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNPRGGTIW 414
           L+FL S  K    L+ K +       +K     K+     + G T ++   +    G  +
Sbjct: 77  LDFLFSIPKDELNLSVKKF-------FKKGFLWKEVPIRLDCGATKYIEFLAKRGIGEDF 129

Query: 415 MF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            F    +++ +  LE +++   ++  +  D   +G+ +F  DG    +N +F   ++   
Sbjct: 130 FFVVMRDISSKKILEREFSMNEQLFKDLFDRAVDGIVLFDKDGGFIDANLSFCKSFEINH 189

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           N LS  +    I +   + +      D     +      +  L   L      + E++I 
Sbjct: 190 NELSHLSLYEFIDSGSRKDF------DNIWKALNRKGKAKGELPVKLRSGVQKLFEFTIT 243

Query: 532 P-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
             + +   M    ++T+    E  L +  E  R+  E
Sbjct: 244 SNIISGFYMSIMRDITEKRSMELHLFKSEERFREIFE 280


>gi|212638129|ref|YP_002314649.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212559609|gb|ACJ32664.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 474

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/407 (20%), Positives = 153/407 (37%), Gaps = 43/407 (10%)

Query: 424 DLETKYNTLVKVQGETIDHLSE---------------------GVAVFGPDGRIKL---S 459
           D E +  TL + +G+TI ++ E                        V    GR+ +    
Sbjct: 70  DQERRIRTLAEQEGQTIQNMLEEQSFIGWPTDQNVIFLSEDQLFFYVVDTRGRLMMGDEV 129

Query: 460 NPAFR-SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER---KSLQ 515
           N   R  L  T +        +R +  T   + +E   +      I +        + L 
Sbjct: 130 NKGLRPLLLSTLQPWTPEKNELRYVEVTIPHHRHELKRFRADELKILTAARPIIIDRQLI 189

Query: 516 GTLELLSD-----SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           G L +  D      +L++S   L +   +   V +  S    +      +          
Sbjct: 190 GVLYVGMDVTSMFRLLKWSTFILLSLGILFIAVAIAFSYFMSKRALVPIQDAYNRQR--- 246

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            FV   S+ELR+PL+ I    + LK     + +    + +E +   +  +  L+ND+L L
Sbjct: 247 QFVADASHELRTPLSVIYSSVEALKMDASLTSDPFSQKTIERLGDETKRMTKLINDLLTL 306

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A  D   +++      L        QS+    ++ NI ++  +  ++  FV D  +  Q+
Sbjct: 307 ARTDDAKLQIERKPFELRACAERTLQSLQELANKKNITLQFHASEQI-EFVGDEDKCTQL 365

Query: 691 FSKILSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              +L NA+ ++ +G TV L  A    +       SV + G  I  +    +F+RF    
Sbjct: 366 LYILLDNAIKYTPEGGTVSLSLAQHVIKQRKVVTMSVADTGIGIAPEHLPRIFDRFYRAD 425

Query: 747 --HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                Q  G GLGLSI +  +  H G++ + S     TT     P++
Sbjct: 426 KARTRQIGGHGLGLSIAKWIVEAHEGNIHVESEVGKGTTFTITFPNE 472


>gi|152992982|ref|YP_001358703.1| hypothetical protein SUN_1395 [Sulfurovum sp. NBC37-1]
 gi|151424843|dbj|BAF72346.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 645

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 9/226 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F   V +++R+P+  ++GF DLLK      ++ KQ +YV+    S+ +++ L+ND+L
Sbjct: 166 KSEFFSSVIHDIRTPMNAVLGFLDLLKEE----VDPKQVEYVQSAHKSAEMVIALINDVL 221

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D   + +G +K++         L               I   +  D  +   + +   RL
Sbjct: 222 DFNKISSGKLKIDLYYFSPVKELENTALLFYHNALSKRIDFIIYVDPNIPYLIKSGPIRL 281

Query: 688 LQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            QI + ++SNA+ F+ +G  V L+     D  + I +VK+ G  IPE+  KS+F+ F   
Sbjct: 282 KQIINNLISNAIKFTPEGGMVTLEMLYELDTDELIVNVKDTGIGIPEEAQKSIFHPFQQA 341

Query: 746 AHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    G+  G GLGLSI +   +L  G +   S +   TT    IP
Sbjct: 342 SKSIAGKYGGTGLGLSISKKLADLLEGELHFDSKEGEGTTFTLTIP 387


>gi|295114872|emb|CBL35719.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SM4/1]
          Length = 596

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 108/579 (18%), Positives = 216/579 (37%), Gaps = 77/579 (13%)

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTY--EILHNLTVAIA 320
           T+ ++ H   +   I R      +AG  +  D+ +     +QL H    +++  +   I+
Sbjct: 33  TIFSVRHLMERLDDIRRHPFQVMDAGGTLQNDMDRIRNSFEQLKHINTPKVVEEIRNEIS 92

Query: 321 IF--DQNRYLQFHNRSFV----ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +   D +R +     S++    +L  +           D  L++  + ++  +++     
Sbjct: 93  LIYEDTDRQMAILRGSYLGDQEDLENLSELMDEIGKEQDAFLDYAAADDRSEDEI----- 147

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN---------------- 418
                 V  S+   ++ +   + +   V+  +  + G  +   +                
Sbjct: 148 ------VSYSTRHLEELYQEFDSRLGKVLDFARNKVGYFYSEADRFCFFAILTSCLVFAA 201

Query: 419 -----------LTVQVDLETKYNTLVKVQGETIDHL--------SEGVAVFGPDGRIKLS 459
                      L  Q +   + N L ++    ID++         E   +    GRI   
Sbjct: 202 ALIILFIYKYLLGRQTEQLKRQNQLFELLSRNIDNIFMINDLHHPERNYISENAGRILGF 261

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            P  + +  T             +         ES     F     +   ER  L  T  
Sbjct: 262 KPDPKKVSPTLLFEYMDEQDREKVKQVFD-TVGESYWSCTFHYRHPALAGERIFLLQTYR 320

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           + ++    +  +     Q + T          ++ L    +   KA+  K+ F+  +S+E
Sbjct: 321 IWTEGEDRFITVLTDQTQILST----------QKELEAAIQQAEKANRAKSEFLSRMSHE 370

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIG   ++    LG  +S+    +  I+ SS  LL L+ND+LD++ +++G ++
Sbjct: 371 IRTPMNGIIGM-GMIAMQNLGD-SSRVEDCIRKINLSSRHLLTLINDVLDMSKIESGRIE 428

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
           +          L  V   I+ +  +  +   VI  G +      D  R+ QI   +LSNA
Sbjct: 429 IKRDVFDFRLFLESVSNVISGQARDKGLNFDVIFLGDMEEELFGDALRVNQILMNLLSNA 488

Query: 699 MDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQR 751
           + F+ +G +++L+ A+ + D       F V + G  I E   + +F  F           
Sbjct: 489 LKFTPEGGSIVLRIAKMDEDSTTVWLKFEVSDTGCGIEEKNYEKIFMPFEQEHEDISHVY 548

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G GLGLSI   F  L  G +++SS     +T    +P 
Sbjct: 549 GGTGLGLSISRRFAELMDGRLTVSSQVGKGSTFTLTMPL 587


>gi|242373792|ref|ZP_04819366.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
 gi|242348529|gb|EES40131.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
          Length = 587

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 153/369 (41%), Gaps = 42/369 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--PGTHIRNIA 484
              ++   ++   I+ + EGV        + +SN     +    ++         I    
Sbjct: 248 EALSSSKNIRDSLINSMVEGVLGINDQRDVIISNKMADDIIHKIDDFSKELIEKQIEQTF 307

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            +    + E +    +   ITS+ +  +     G + ++ D   E+++            
Sbjct: 308 KSEGTEFQEIEINTRYYVFITSYINRIQPNGRNGIVVIIRDMTNEHNL------------ 355

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                                  D++K  F+ +VS+ELR+P++ + G+T+ +    +   
Sbjct: 356 -----------------------DQMKKDFIANVSHELRTPISLLQGYTESIVDGVVTEP 392

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + +    +  +   S  L  LVN++L++A +DA  + +      ++DLLN++K     + 
Sbjct: 393 D-EIRDSLAVVLDESKRLNRLVNELLNVARMDAEGLSVEKEVQPIDDLLNKMKAKYRMQA 451

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + ++ ++  S      +  D  R+ Q+ + ++ NA  ++  G T+ +  A+DN   I  
Sbjct: 452 EDLDLTMEFNSGNDNQLWDYDMDRMDQVLTNLIDNASRYTQPGDTIAVTTAKDNRYNILY 511

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           + + G+ I  +  + VF+RF       +R   G GLGL I +  I  HGG + + S    
Sbjct: 512 ISDTGTGIAPEHLQQVFDRFYKVDASRKRGKQGTGLGLFICKMIIEEHGGKIEVESELGK 571

Query: 781 VTTINCRIP 789
            TT   ++P
Sbjct: 572 GTTFIIKLP 580


>gi|148977089|ref|ZP_01813729.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145963558|gb|EDK28820.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 602

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 115/247 (46%), Gaps = 8/247 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +    L+   E+ + A+  K+ F+  VS+E+R+PL  I+G   +L       ++  +
Sbjct: 212 EMRKQYVQLSLAKESAQSANRAKDDFLSVVSHEMRTPLNGILGMAQILGEG----VDEAK 267

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  I +S   LL ++NDILD+A ++ G ++L      L  L+ EVK +      + +
Sbjct: 268 KEQISIIVSSGEHLLLIINDILDIAKMEQGKLELRIEPFSLEALVQEVKNAFDNTCKQKS 327

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVK 724
           +   V ++   G+++  D  RL Q+   +L NA+ F+ KG+     +          ++ 
Sbjct: 328 LDYVVTTEHIEGTYLAGDNTRLKQVIFNLLGNAVKFTKKGAVTCHFQWLESESRLTITIT 387

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP D  +++F  F        R   G GLGL+IV   + L  G + + S     +
Sbjct: 388 DTGIGIPTDKLETIFKPFSQADSSTTRHFGGTGLGLAIVTQLLELMSGKIELVSEVNVGS 447

Query: 783 TINCRIP 789
                +P
Sbjct: 448 QCTVTLP 454


>gi|304321187|ref|YP_003854830.1| non-motile and phage-resistance protein [Parvularcula bermudensis
           HTCC2503]
 gi|303300089|gb|ADM09688.1| non-motile and phage-resistance protein [Parvularcula bermudensis
           HTCC2503]
          Length = 754

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/417 (22%), Positives = 183/417 (43%), Gaps = 24/417 (5%)

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            G    V+  +      + +   L      + + +  V    ET++ L +   ++  + R
Sbjct: 299 EGTYARVLFRTTSDAEGMGIAVPLGDSGLADPQASQEVDRLRETVEALPQAFLLWDQNER 358

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAAT-----CSRYYNESDGWDLFAAIITSFDDE 510
           +   N  F SL+  +   ++ G     + A      C    + +   D   A+   F +E
Sbjct: 359 LLAWNAPFLSLFGIDRGAVAEGIDAGALMALASADLCPLLAHFTPPTDDDQAVEAVFPNE 418

Query: 511 R-------KSLQG----TLELLSDSVLEYSIIPLPNAQTMLT----FVNVTDSVRAERAL 555
           +       K++ G        +SD+ +E         +   T      N  D   A R  
Sbjct: 419 QFVRVVRTKTVGGGWVCVAHDVSDAKIEAEQRARNERELQHTVEVLKRNREDLREAVRRY 478

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYIS 614
             +    ++A+  K+ F+ ++S+ELR+PL  I GF++L+K    G L + K  +Y++ I 
Sbjct: 479 ETEKLNAQEANRAKSEFLANMSHELRTPLNAINGFSELMKEELFGPLGHKKYVEYIKDIH 538

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS + LLNL++DILDL+ ++AG + L+   + L+ LL E  + +  +M E ++  + ++D
Sbjct: 539 ASGSHLLNLIDDILDLSKLEAGKLDLDLCQVDLDRLLKESLRLVEMQMREASLEFRSLTD 598

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             + S  AD + + Q+   +LSNA  F+ +G  V +    D       + + G  +  + 
Sbjct: 599 -HIPSVWADPRAVKQVILNVLSNAQKFTPQGGAVTVTTLVDLTTVTILIADTGIGMTPEQ 657

Query: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + +   F    +      RG GLGL++ +S +    G ++++S     T     +P
Sbjct: 658 LEKLGQPFELADDHFSRASRGTGLGLALSKSLMEAQNGLLAVTSEPRRGTVAAICLP 714



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 110/334 (32%), Gaps = 34/334 (10%)

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
             W         +   +++    Q   L+        + +   ++G C  L  +++   +
Sbjct: 152 GRW----AATARALTPDQVLVAAQPVPLIPFALWAPYLSVGVGIAGLCWALMAMAIRTRH 207

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +E      +   LS  +   +         +W R+  G +L    +  +           
Sbjct: 208 TEAISEGERRHLLSRILGPERAGIG-----IWRRENTGVVL---PAATRAALGFTRQNVT 259

Query: 236 AIGESRKLFKEEIKKRMI-----SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
              +  + F  +    +      +      +      T+E    +   + R  +     G
Sbjct: 260 MPTDDLEGFIHQADTPVAHRFFFADDIGGGDLVLRCRTVEGTYARV--LFRTTSDAEGMG 317

Query: 291 IAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           IA+ +      +   + ++    E +  L  A  ++DQN  L   N  F+ L+ ID   +
Sbjct: 318 IAVPLGDSGLADPQASQEVDRLRETVEALPQAFLLWDQNERLLAWNAPFLSLFGIDRGAV 377

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
           A       L+  L SA+  P   ++            + +        PN Q + V+ T 
Sbjct: 378 AEGIDAGALMA-LASADLCPLLAHFTP---------PTDDDQAVEAVFPNEQFVRVVRTK 427

Query: 407 NPRGGTIWMFENLT-VQVDLETKYNTLVKVQGET 439
              GG + +  +++  +++ E +     ++Q   
Sbjct: 428 TVGGGWVCVAHDVSDAKIEAEQRARNERELQHTV 461


>gi|296104922|ref|YP_003615068.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059381|gb|ADF64119.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 777

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 152/380 (40%), Gaps = 24/380 (6%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K   + ++Q           +D   + V     D      N A   L    E 
Sbjct: 134 EQLKIEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 193

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +   +    E+D       +  +++       G       +  E   +P
Sbjct: 194 QLIHLKPQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 248

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 249 YYDRVGKRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  +    L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 307 ILLDT---DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLA 363

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +   +     L    V D  RL QI   ++SNA+ F+ +G  V ++
Sbjct: 364 DLENLSGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQG-QVAVR 422

Query: 712 AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINL 767
              D GD   F V+++G  IP++    +F  +         +   G G+GL++ +     
Sbjct: 423 IRYDEGDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKS 482

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG ++++S     +T    
Sbjct: 483 MGGDITVASQAGKGSTFTLT 502



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  +L+ +  E+ E  +   +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQATLEQLKIEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q    + + ++ EE   +++ +   EK F   VS           G    ++I
Sbjct: 189 GKS--EKQLIHLKPQDVYSEEAAAKVMETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|254520625|ref|ZP_05132681.1| two-component system sensor histidine kinase [Clostridium sp.
           7_2_43FAA]
 gi|226914374|gb|EEH99575.1| two-component system sensor histidine kinase [Clostridium sp.
           7_2_43FAA]
          Length = 578

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 153/381 (40%), Gaps = 24/381 (6%)

Query: 416 FENLTVQV-----DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           F N+T ++       E             I  +S+ + +     RIK  N   +  +  +
Sbjct: 215 FNNMTNRLYDFEKSTEGNLIAEKNRSLSIIKSISDPIILLDDAFRIKFINDEGKIFFNID 274

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E           I  + S   N S  +      +   ++ R+ L              + 
Sbjct: 275 EESC--------IDKSFSEVINLSKVYKYITESVNKDNENREELIEIKRNNKKYFFNITS 326

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +  ++  +  V V         L +    L++ + IK  F+  +S+EL++PLT+I+  
Sbjct: 327 TIIKGSEEKIDGVVV---------LFKNITGLKELEIIKADFIGTISHELKTPLTSIMMG 377

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L+    +GSLN KQ   VE I      L +LV+++L ++ + +     N     + +L
Sbjct: 378 VGLINDKNIGSLNDKQRDIVETIKEDVQKLNDLVSNLLKISHIQSNKTSFNIKKSDIKEL 437

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +     +      E  I +K+  + +L   + D +++  + + +LSNA+ ++ +GS + +
Sbjct: 438 IKSCLYNFIPLAKEKEIELKLSLEERLPEVMMDEEKIKWVLNNLLSNAVRYTERGS-IKI 496

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
                  D + SV + G  IP +  + VF RFV            GLGLSI +  + +HG
Sbjct: 497 DGYIKENDILVSVTDTGRGIPSNYLEKVFERFVRVEGFEIPEESTGLGLSIAKEIVEIHG 556

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +   S     +     IP 
Sbjct: 557 GKIWCESEVGYGSKFIFTIPL 577



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S E  +  +   +  I+ +++  I + D    ++F N      + ID        S  E+
Sbjct: 228 STEGNLIAEKNRSLSIIKSISDPIILLDDAFRIKFINDEGKIFFNIDEESCIDK-SFSEV 286

Query: 356 LEFLRSANKLPEQLNWKTW-KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           +   +    + E +N     +E +  + ++++ +       N  +  +  +     G + 
Sbjct: 287 INLSKVYKYITESVNKDNENREELIEIKRNNKKYFF-----NITSTIIKGSEEKIDGVVV 341

Query: 415 MFENLTVQVDLE 426
           +F+N+T   +LE
Sbjct: 342 LFKNITGLKELE 353


>gi|254503637|ref|ZP_05115788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222439708|gb|EEE46387.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 516

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 130/266 (48%), Gaps = 9/266 (3%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEK-----NEALRKADEIKNSFVQHVSYELRSPLTNI 587
           L NA TML +    D + AE                 A+  K+ F+  +S+ELR+PL  I
Sbjct: 222 LKNANTMLEYRAEKDHLIAELETANAMSDEARRRAEAANVAKSRFLATMSHELRTPLNAI 281

Query: 588 IGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +GF++++K   LG + N     Y   I  S   LLNL+N+ILDL+ ++AG  +L   ++ 
Sbjct: 282 LGFSEIMKDEVLGPMKNDTYKSYSADIHGSGQHLLNLINEILDLSRIEAGRHELQEESLY 341

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L ++++E    +  + +  NI +    +  +    AD + L Q+   ++SNA+ F+  G 
Sbjct: 342 LEEVVDECGSMMTVRANAKNIMLHHTLEPDMPRVWADERALRQVVLNLISNAVKFTPVGG 401

Query: 707 TVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
            V +K  R + D    S+ + G  IPED   +V   F   +H  +    G GLGLSIV++
Sbjct: 402 EVHIKVGRTSDDGQYVSITDTGPGIPEDEIPTVLEAFGQGSHAIKSAEPGTGLGLSIVQA 461

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            + +H G   I S     T     +P
Sbjct: 462 LVGMHDGKFVIKSQLGVGTEAIMSLP 487


>gi|254509661|ref|ZP_05121728.1| PAS domain containing protein [Rhodobacteraceae bacterium KLH11]
 gi|221533372|gb|EEE36360.1| PAS domain containing protein [Rhodobacteraceae bacterium KLH11]
          Length = 502

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 180/449 (40%), Gaps = 36/449 (8%)

Query: 117 NWLKFHHYIKLSKATEKLRKEGQ----SFDLVAETQNDCAIK-IEGRVSGSCAFLRILSL 171
             L    +    +A + +R EG     + D   E   +   + I+G +      +++  L
Sbjct: 74  RRLLQRDFPTFPEAPDIVRSEGNLAVPAIDCTLE--REVLCEWIDGII-----RVQLRDL 126

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
            G       T +K +  S+ I   ++  +   + VW  D A  + W N +Y         
Sbjct: 127 TGT------TPVKHRDPSDPI---RLAMEQAPYPVWLVDNAKKVRWCNAAYVTLA----- 172

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
             +K  G    L    I         L +    ++   +      + + RV+    +   
Sbjct: 173 --RKVAGPDADL-TSPIFPAFGDEPPLGRKTRVSIPVKDSTAKLWFDLTRVIRDQDQLCY 229

Query: 292 AID----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           A+D    V  E      +    +    L++ +AIFD+NR L   N + ++L  +   FL+
Sbjct: 230 AVDINAIVEAETAQRKFVQTMTKTFAQLSIGLAIFDRNRQLALFNPALIDLTTLPPDFLS 289

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVT 405
             PS     + LR  + +PE  N+++W+  +  + ++++   +++TW LP+G    V   
Sbjct: 290 LRPSLSSFFDRLRDQHMMPEPKNYRSWRRQMNDLLEAAQDGNYQETWSLPSGSVYSVSGR 349

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            +P G   ++FE++T ++ L  ++ + + +    +D L++ +AVF  DG +  +N A+  
Sbjct: 350 PHPDGAVAFLFEDITAEITLTRRFRSEMDLMQSILDKLADAIAVFTDDGSLAFTNYAYHM 409

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +W   +        +  I          +         +T  ++ R    G L L +   
Sbjct: 410 MWGDCDEVGFEPLTVLEITRQWQDRCTATPLLGEIRDFVTGREN-RAEWSGELALKTGGT 468

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           +  ++ P+ N  T++ F   + +    R 
Sbjct: 469 VTCTVSPMQNGATIVRFATESAAAEIARM 497


>gi|114569266|ref|YP_755946.1| histidine kinase [Maricaulis maris MCS10]
 gi|114339728|gb|ABI65008.1| histidine kinase [Maricaulis maris MCS10]
          Length = 553

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 10/246 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L         A + K+ F+  +S+E+R+PL  ++G T LL+ +   +L+++Q+++V  
Sbjct: 145 EQLGRARLEALAASKAKSDFLATMSHEIRTPLNGVLGVTQLLQAT---TLDAEQAEFVRV 201

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S  ILL L+NDILDL+ ++AG M+L  +    + L+ + +   + +  E  I   + 
Sbjct: 202 IDDSGKILLRLLNDILDLSKIEAGKMELEVTPFRPSTLVRDAQTLWSAQAREKGIAFSIE 261

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNG 727
           +D  +   +  D  R+ Q+   ++SN + F+  GS  +    L   R        V + G
Sbjct: 262 ADCDEDAQYEGDPVRIKQLLFNLISNGIKFTQSGSVAVRMQFLPLGRRRNVMRVEVVDTG 321

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP+   + +F+ F        R   G GLGL+I      L GG V ++S     +   
Sbjct: 322 CGIPDTALRELFSAFKQADVATNRLHGGTGLGLAICRRLAELMGGSVDVTSRPGEGSKFW 381

Query: 786 CRIPSK 791
             IP K
Sbjct: 382 FDIPLK 387


>gi|6448582|emb|CAB61240.1| virulence protein S [Klebsiella pneumoniae]
          Length = 1218

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 168/393 (42%), Gaps = 12/393 (3%)

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           +I++S   GG  ++   +  +   +      + ++    + +   V +  P+G I+  N 
Sbjct: 546 LILSSLLWGG--YLLRAIRREKASQAALEYQLSLRQTLSNSIPVPVYITTPEGEIESYNR 603

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCS--RYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           AF + +  ++      +     +          +     L    + S      +      
Sbjct: 604 AFNAFFTPQQREAIHYSLFDRRSPLVHIFPVIQQEMQQGLAPETVASHQFTLNNGAEDRT 663

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +L    L   +        +  + ++T+S +   AL  + +   +A   K+ F+  +S+E
Sbjct: 664 ILHWMTL-CPLPVPLPPVLICGWQDITESRKLMEALQVEKDKAIEASRAKSRFLARMSHE 722

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P++ I+GF +LL T        +  + ++   A++  L+ L+ D+LD+  +++G  +
Sbjct: 723 IRTPVSAIMGFLELLATGPQS--EREAQESLQLAYATAQSLIGLIGDVLDMEKIESGNFE 780

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNA 698
           L    + +  L      + A    + N+++ V      G  +  D Q + Q+ +  LSNA
Sbjct: 781 LTPEWVDIEALTQATMANFAGLARQKNLQLTVSYQLNAGGILFLDPQAIKQVLANFLSNA 840

Query: 699 MDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           + F+  G   + ++      D    + SVK++G  I E+  + +F  F   +   ++ G 
Sbjct: 841 IKFTVSGGVEIKVETQPRENDAAQLMLSVKDSGVGISEEEQQLLFKPFSQASCGKKQMGS 900

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL+I +  ++   G +S++S     TT++  
Sbjct: 901 GLGLTICKELMDRMHGTISVASHPGTGTTMSIY 933


>gi|213971024|ref|ZP_03399145.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|301385587|ref|ZP_07234005.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058829|ref|ZP_07250370.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato K40]
 gi|302132142|ref|ZP_07258132.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924260|gb|EEB57834.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|331014872|gb|EGH94928.1| sensory box histidine kinase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 595

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +     +
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGEALS 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +++  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIDIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E +     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARYEGQAQEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DIQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|191637827|ref|YP_001986993.1| Sensor protein (Fragment) [Lactobacillus casei BL23]
 gi|239631191|ref|ZP_04674222.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301065952|ref|YP_003787975.1| signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|190712129|emb|CAQ66135.1| Sensor protein (Fragment) [Lactobacillus casei BL23]
 gi|239525656|gb|EEQ64657.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300438359|gb|ADK18125.1| Signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|327381893|gb|AEA53369.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           casei LC2W]
 gi|327385054|gb|AEA56528.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           casei BD-II]
          Length = 555

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 151/374 (40%), Gaps = 28/374 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q  L  K           ID+L  GV +   D  + L N A   L              
Sbjct: 203 EQAHLREKVAVRQSSFDRLIDNLPLGVMLIDTDKDVILHNHAMSQLLGH----------- 251

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I      Y ++   + L   I  +F  E+   Q    L +   ++ S+IPL    + L
Sbjct: 252 -QIPQPRHSYLDDVKTYALARMIEHTFRHEKTHHQELTILTTQKSVDASVIPLNQGISRL 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +           +      LR+ ++++  FV +VS+EL++P+T I GF + L      
Sbjct: 311 QVL----------VILYDVTYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLGGAKN 360

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +   +++  I   S  L  L+NDIL L+  D+       +++ L  L+++   ++A 
Sbjct: 361 D-PATLDRFLGIIYDESKRLTQLINDILTLSRPDSNQNV--AASVALKKLVDDALHNLAK 417

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +  IR++V     L   V D ++L QI   +L+NA+ ++     V + A   +    
Sbjct: 418 VIQDKQIRVEVAITPDLL-VVTDERKLTQIVRNLLNNAVFYNRLAGHVTISAQVVDHQLS 476

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  I E     +F RF            G GLGL+IV   +    GHV++ S  
Sbjct: 477 LAVADTGIGISETEQARIFERFYRVDKARSRHNGGTGLGLAIVAELVKSMDGHVAVHSQV 536

Query: 779 EGVTTINCRIPSKE 792
              +T    +P  E
Sbjct: 537 GVGSTFTVTLPVGE 550


>gi|300868141|ref|ZP_07112775.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333876|emb|CBN57955.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1055

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 17/263 (6%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           TF ++TD   AE  L E   A   A++ K+ F+ ++S+ELR+PL  I+G+  +L+     
Sbjct: 551 TFQDITDRKNAEVTLQEAKLAADAANQAKSEFLANMSHELRTPLNGILGYAQILQRD--S 608

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           SL  KQ   +  I    + LL L+NDILDL+ ++A  M+L  S+      L  V +    
Sbjct: 609 SLTPKQLAEINIIYKCGSHLLTLINDILDLSKIEARKMELYPSSFYFLGFLQVVSEICRI 668

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---------VIL 710
           K  +  I      D  L   V AD +RL Q+   +L NA+ F+  G+          + +
Sbjct: 669 KAEQKGISFICNFDAALPYVVEADEKRLRQVLVNLLGNAVKFTDAGAVTFKVAVVDLISV 728

Query: 711 KAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFI 765
           ++            F +++ G  +  +  + +F  F      R    G GLGL+I    I
Sbjct: 729 ESTTSTLTNINTIRFQIEDTGVGMTSEQMQKIFQPFEQVGDTRRMVEGTGLGLAISLKII 788

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
            + G  + ++S  +  +     +
Sbjct: 789 EMMGSSIKVASKSQAGSQFWFDL 811


>gi|255009439|ref|ZP_05281565.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147205|ref|ZP_07809398.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313135972|gb|EFR53332.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 633

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/503 (19%), Positives = 211/503 (41%), Gaps = 39/503 (7%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-------IDLAFLATNPSNDELLEFLR 360
            ++I +N+ V + ++++   L   N   +E++        I L+   +     ++LE L+
Sbjct: 141 FHDIFNNIPVGLELYNKEGVLLDCNNRNLEIFGVTDKNRIIGLSLFESPNVTQDMLESLQ 200

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
           +       L++     N     +   + +      + ++L +          + M  + T
Sbjct: 201 AGCPGSFHLHY-----NFDEERRLFRSERKGMVDLDVRSLMLYDAEGNLSNYLLMNIDNT 255

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-------FRSLWKTEENR 473
            + +  +K +          D+   G A      +I L N         +R+L ++ +  
Sbjct: 256 ERNNALSKVHDFENFFSIISDYSKVGYA------KINLLNHTGYAIRQWYRNLGESHDTP 309

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-- 531
           L+    + +      R           A     FD + +  +       + + + S++  
Sbjct: 310 LTDIIGVFSYMHPDDRKLVLDFYEKAKAGTERFFDGDLRIRRAEGSDEWNWIHKSSMVTS 369

Query: 532 ---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              P P  + +    ++T     E  L    +   +++ +K++F+ ++S+E+R+PL  I+
Sbjct: 370 YQSPDPRLELVEVNYDITVQKETEAELRAARDKAEESNRLKSAFLANISHEIRTPLNAIV 429

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+DLL T       ++Q ++ + I  ++ +LL L +DI+DL+ +DAG  +     + L 
Sbjct: 430 GFSDLLMT---VDDPAEQEEFRQTIQKNNVLLLQLFSDIIDLSKIDAGSFEYMPKPVYLY 486

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
                + Q +  ++ E  + +++  D  L   F AD   L Q+ +  +SNA+ F+ +G T
Sbjct: 487 QFCAMMLQKMKDRVPE-GVELRIDEDSPLDAWFNADSGYLNQVITNFVSNAIKFTHRG-T 544

Query: 708 VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
           + +    D        V++ G  I  +   +VF+RF+      Q  G GLGL + +S I 
Sbjct: 545 ITIGYQIDAARQLEMFVEDTGIGISAENQTAVFDRFMKVDSFVQ--GTGLGLPLCKSIIE 602

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
             GG + ++S     +     +P
Sbjct: 603 KMGGRIGVTSEFGKGSRFWFTLP 625


>gi|255008569|ref|ZP_05280695.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313146297|ref|ZP_07808490.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313135064|gb|EFR52424.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 639

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 124/255 (48%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T     D  R++  L E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L + 
Sbjct: 390 YLRTKRLKDDLERSQADLYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG 449

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             GS    Q  Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S
Sbjct: 450 --GSSEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEADKVTLTPEDCDVVQLCRQALSS 507

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARD 715
           +     E+  R    +  +      D QRL Q+   +L+NA  F+ K  T+ L  +  ++
Sbjct: 508 VEMSRRESGNRFVFETQTESFVLQVDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKE 566

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +F+V + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I 
Sbjct: 567 KNRVLFAVADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGSIWID 624

Query: 776 SSDEGVTTINCRIPS 790
              E         P 
Sbjct: 625 PDYERGARFVVSHPL 639


>gi|148977187|ref|ZP_01813814.1| Signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145963469|gb|EDK28732.1| Signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 1143

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 175/414 (42%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +   + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQDRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQMRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   +   +     + 
Sbjct: 656  RYLELFEFPAGLIQVGRPISDVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGTRHTSSRI- 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL----------------- 562
                 V+E    P+P+   +++F ++T   +AE+AL + NE+L                 
Sbjct: 715  RPDGRVIEVQGNPMPSGGFVMSFTDITVFRQAEQALKDANESLESRVHERTQELEKLNHR 774

Query: 563  --------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                     +  + K+ F+  VS++L  PL     F   L     G    + S ++E   
Sbjct: 775  LVKATQISDQESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKGQEVKQLSSHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G ++ N   I ++D+L  +    +    +  I  K+I  
Sbjct: 835  GAAE---DLIGDLLDISRLESGKLETNIHAIAVHDVLANLNAEFSALATQQKIDFKMI-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++ +G  V+L A R NG     V +NG+ I ED 
Sbjct: 890  PSSLFIHSDPKLLRRVIQNFLTNAFRYNPEG-KVVLGARRVNGQVRIDVWDNGTGIDEDK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F   +     +G+GLGL+I +   ++ G  +S+ S     +  +  +
Sbjct: 949  QQEIFEEFTRGSQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPGQGSVFSITL 1002



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQMRLVAWNQRYLELFEFPAGLIQVGRPIS 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTRHTSSRIRPDGRVIEVQGNPMPSGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV    E       +    
Sbjct: 735 MSFTDITVFRQAEQALKDANESLES 759


>gi|219848900|ref|YP_002463333.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543159|gb|ACL24897.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 752

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 162/392 (41%), Gaps = 32/392 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQ-VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
             T N  G     F  +T   + L  +       +   ++ +++G+      G I+  N 
Sbjct: 367 TATQNEIGVLAQNFNRMTEYLIKLLAQVRAEAGQRAAIVESITDGIIFTDIHGEIRSINR 426

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A R L   +++                R  ++     L   I   F D+R      L  L
Sbjct: 427 ATRRLLGLDDD------------DPIPRRLSDLPLQPLQEGIP-GFGDQRAQ---DLFAL 470

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            D+ +  S+ P+      L           E  +          D  K +F+  +S+ELR
Sbjct: 471 GDAFIRLSVAPVKEENGTLLGYVAVLQDLTEEVM---------VDRAKTNFIGTISHELR 521

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I G  DLL     G L+ +Q  +VE I   +  + NL+++++ +A +D+G +K N
Sbjct: 522 TPLTVIRGNADLLLRGLAGPLDEEQKSFVESIRLHANNMTNLISNVITIANLDSGSLKSN 581

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              I +   + +    + +++    +++++    KL + +AD   +  I  ++L NA  +
Sbjct: 582 LEPIEVRRPIEDAVWQVQSQIKAKGLQLEIAIPKKLPTVLADVDHVRTIMIQLLDNARRY 641

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-----GQRRGVGL 756
           ++ G T+ ++A          V + G  IP  M + +F RF+             RG+GL
Sbjct: 642 TNAG-TITIRAIPQPDMMRIEVSDTGRGIPPHMHEQIFERFIRGEGTSEGINSSERGIGL 700

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  +   GG + + S+    +T    +
Sbjct: 701 GLAIAKQLVERLGGTIGVESTPGQGSTFFFTL 732


>gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 915

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     +   + +     G+ +    DG   LSN     L  T  N L+     R    
Sbjct: 317 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSN----ELAHTYLNMLTHEDRQRLTQI 372

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            C +  N       F  ++TS +    +LQ +           +I  L +  T       
Sbjct: 373 ICGQQVN-------FVDVLTSNN---TNLQISFVHSRYRNENVAICVLVDVST------- 415

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L   
Sbjct: 416 --RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKG 470

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V  ++ SS++LL +++DILD + +++  +K+        +++N +  +    +   
Sbjct: 471 VDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRK 530

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++L    D       V+
Sbjct: 531 QLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVR 589

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP      +F+ F       +   +G GLGL+I E  I++  G +S+ S     +
Sbjct: 590 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 649

Query: 783 TINCRIPS 790
               RIP 
Sbjct: 650 QFTLRIPL 657


>gi|90422866|ref|YP_531236.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90104880|gb|ABD86917.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 895

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 154/394 (39%), Gaps = 16/394 (4%)

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           ++++ N         ENL  ++ LE +   +  +  +  D+ S+ +     DGR+     
Sbjct: 210 IVLSRNLVAHGHLFMENLRAKLQLEHQTEIISLLLKDYQDNASDWLWQTAADGRLVDIPE 269

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            F    +   ++L  G  + ++         E    D   A++   +    ++   +   
Sbjct: 270 RFVEAAQLPLSQLR-GATLADVLELLCP--CERATVDGIIALMQQREAVNDAVVHIMAGG 326

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              +   S  P  +                ER    + E     +  K+ F+  +S+E+R
Sbjct: 327 QPRMWSVSAKPTFDHNGKFAGYRGVGRDVTER---WRAERAEAENRAKSEFLAIMSHEIR 383

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  ++G  ++L  +    L+ +Q   VE I  S   L  ++NDILDL+ ++AG  +  
Sbjct: 384 TPMNGVLGLANMLLET---DLDPEQHHAVETIRESGDNLQRILNDILDLSKLEAGRFQFE 440

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMD 700
                   L+  V   + +      + I+   D  L      D  R+ Q+   + SNA+ 
Sbjct: 441 TVDFSPAALVEAVCSVVRSSAKAKGLEIERAIDPGLPKGLNGDMARIRQVLLNLASNAVK 500

Query: 701 FSSKGSTVILK--AARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           F+ +G   I+    ++ +G  +    V + G  I  D    +F+ F        RR  G 
Sbjct: 501 FTDRGRVTIMANCVSQADGRAVVEWRVADTGIGIATDRVGQLFSDFAQADVSINRRFGGT 560

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL+I    +   GG + +SS     +T    +
Sbjct: 561 GLGLAISRRIVEQMGGAIDVSSEQGSGSTFRFSL 594


>gi|330965670|gb|EGH65930.1| sensory box histidine kinase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 595

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +     +
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGEALS 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E +     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARYEGQAQEQDIVLIL 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DIQEPMPRLHADQSQLERVLDNLLDNALRHTPPSGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
 gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
          Length = 916

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTDLNATQRDHLTTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  +L   R            + + G 
Sbjct: 395 KNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|327394559|dbj|BAK11981.1| sensor kinase protein RcsC [Pantoea ananatis AJ13355]
          Length = 880

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 128/254 (50%), Gaps = 7/254 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +
Sbjct: 371 ICVLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQ 430

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S     V  ++ SS++LL +++DILD + +++  +K+        +++  +  + 
Sbjct: 431 ---LPSGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNY 487

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + + +  + +    +  +  +   D  RL Q+ S +L+NA+ F+  G  +IL A    G
Sbjct: 488 LSLVVKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVTQG 546

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F  ++ G  IP      +F+ F    +  +   +G GLGL+I E  IN+  G + + 
Sbjct: 547 YLAFRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVE 606

Query: 776 SSDEGVTTINCRIP 789
           S     +    RIP
Sbjct: 607 SEPGMGSQFIVRIP 620


>gi|170727177|ref|YP_001761203.1| histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812524|gb|ACA87108.1| histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 576

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 119/236 (50%), Gaps = 7/236 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           +     +++     FV  +++ELR+PL  ++G T+L+  ++   L+  Q + ++ +  S 
Sbjct: 205 QKTRAEQSERSTKDFVAMINHELRTPLNGLLGNTELMIETR---LSDYQEKLIKNMVQSG 261

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +L  ++ND+LD++ ++AG+++LN       +L N ++ + A +  E  +      D K 
Sbjct: 262 ELLKVIINDLLDISKINAGMLELNEVAFSTLELTNAIQNTFAPQAAEKGLAFDFEIDPKT 321

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  R+ QIF  ++ NA+ F+ KG  + +K       F F + + G  IP++   
Sbjct: 322 PENLSGDPDRIKQIFVNLIGNAIKFTDKG-KISIKIDWHESSFRFVISDTGCGIPKEHLA 380

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++F+ F    +R  R   G GLGL+I +  +N   G +++ S  +  ++    +P 
Sbjct: 381 NLFDPFTQVNNRSNRLYEGTGLGLTICKLLVNEMLGQIALESQPDKGSSFTVTLPL 436


>gi|332142546|ref|YP_004428284.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552568|gb|AEA99286.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 784

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/388 (23%), Positives = 160/388 (41%), Gaps = 21/388 (5%)

Query: 415 MFENLTVQV----DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           +F++L  ++    + E +   L  +    ID   + +     +GR    N     +    
Sbjct: 135 LFKDLEREIQDKSEQEAQARRLSTLLRSIIDASPDLIYYRNEEGRFAGCNRIAELMTGKT 194

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E  L   T         +R    SD       ++ +     + L            E   
Sbjct: 195 EQELLGLTPKDVYEEELARQIVASDH-----EVLETNASITEELWLRFADGRRRYFEMKR 249

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +P  + +     +        ER   +   A  KA   K  F+  +S+ELR+PL  I+G 
Sbjct: 250 VPFFDKEGNRLGLLSFGRDMTER--KQAENAAAKASTDKTRFIATISHELRTPLNGIVGL 307

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + +L+ ++   L+ +Q  +V  I AS+  L N+ NDI+DL  +D   ++L+  TI L D 
Sbjct: 308 SRMLRDTE---LSDEQFSWVSTIYASAITLGNIFNDIIDLDKLDRDKLELSLKTISLKDF 364

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-V 708
             E+   I     +  + +K   +  L   V  D  RL QI   IL NA+ F+ KG   +
Sbjct: 365 TEELSSIIRLLAADKQLELKTSINEPLPRLVEIDGTRLRQILWNILFNAVKFTQKGHVSL 424

Query: 709 ILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
            + + + +GD     F +++ G  IPE     +F  +    H   +   G G+GL+I + 
Sbjct: 425 SVSSTKPDGDKAYVTFVIEDTGVGIPESEIDKIFAMYYQVDHPDHQSATGTGIGLAICKQ 484

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++L  G + +SS +   T     +P +
Sbjct: 485 MVDLMNGEIHVSSKEGKGTRFEIVLPVQ 512



 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 60/150 (40%), Gaps = 15/150 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R      +  E+ + + +  +     ++ + + D+   L+++R++ G     N   +  T
Sbjct: 132 REALFKDLEREIQDKSEQEAQARRLSTLLRSIIDASPDLIYYRNEEGRFAGCNRIAELMT 191

Query: 227 ETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIV 280
              G   Q+ +G   + +++EE+ +++++S         +++         G  + +++ 
Sbjct: 192 ---GKTEQELLGLTPKDVYEEELARQIVASDHEVLETNASITEELWLRFADGRRRYFEMK 248

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQ 304
           RV       N  G      D+++     + 
Sbjct: 249 RVPFFDKEGNRLGLLSFGRDMTERKQAENA 278


>gi|323497639|ref|ZP_08102656.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM
           21326]
 gi|323317388|gb|EGA70382.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM
           21326]
          Length = 566

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 118/238 (49%), Gaps = 7/238 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +      +++     FV  +++ELR+PL  ++G  +LL  +   SL+ +QS  +  +  
Sbjct: 192 QKARARAEESERSTKEFVAMINHELRTPLNGLLGSAELLADT---SLDGEQSVLLNNLIH 248

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SD 674
           S  +L +++NDILD + + AG+M+L  +     D+ + +      + +E  I   +I  +
Sbjct: 249 SGGLLRHIINDILDFSKMSAGMMELIPTRFDWRDIRDMLTGVFEPRANEKGIGFNLIELN 308

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
               +F+ DR+R+ Q+   ++ NA+ F+ +GS V ++     G   F V++ G  I ++ 
Sbjct: 309 PMPEAFIGDRERISQVLVNLVGNAIKFTHQGS-VSIETDWQEGQVSFRVRDTGIGIDQES 367

Query: 735 CKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F+ FV           G GLGL+I +  + +  G +++ SS    +    +IP 
Sbjct: 368 MAQLFDPFVQADRTAKRNYEGTGLGLAICKRLVEMMKGELTVVSSKGVGSEFRVKIPL 425


>gi|319938298|ref|ZP_08012695.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319806591|gb|EFW03249.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 464

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 124/257 (48%), Gaps = 2/257 (0%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +  + +    +  R  R+  +  + L K +E +  F+  VS+E ++PLT I GF  +L
Sbjct: 192 NYRVRVNYTGNDEIARLNRSFNQMAQQLAKQEETRQQFISDVSHEFQTPLTAIQGFATIL 251

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K  +L  +  ++ +Y + I   S  L  L  ++L L  +D   +KL  S   L + L+ V
Sbjct: 252 KNEELPLV--QRQKYADIILFHSKRLSTLSKNMLQLTILDGEDVKLETSEFSLIEQLSRV 309

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            ++        NI I+           AD  RL Q++  +++NA+ ++++   V +   +
Sbjct: 310 IETQDNLALSKNIEIEFQLPKNDIRIEADESRLEQVWINLVNNAIKYTNENGVVTISVKK 369

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            + +   ++++ G  + ++    +F RF          G GLGLSIV+  I+LH G + +
Sbjct: 370 SSKEVEVTIEDTGVGMSKEAISHIFERFYRQDKSRSIEGNGLGLSIVKRIIDLHRGTIDV 429

Query: 775 SSSDEGVTTINCRIPSK 791
            S ++G +    R+P +
Sbjct: 430 KSREDGGSKFIIRLPQE 446


>gi|206580985|ref|YP_002237365.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
 gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
          Length = 946

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/565 (18%), Positives = 204/565 (36%), Gaps = 51/565 (9%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L    I++        ++      +      N  + I + +        A+         
Sbjct: 158 LRDVPIERDQALKVLHQRIEQYRNAPQNERGNNLFWISQGVRPGVGYFYALTPVYMANRL 217

Query: 303 DQLTHTYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND- 353
             +    + +         +L +++ IFD N              + +  ++        
Sbjct: 218 QAMLGVEQTIRMESFFTPGSLPMSVTIFDDNGQPLISLAGAEGKIQSEAKWMQERMWFGY 277

Query: 354 --ELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                E +   +  P  L+  +    + +    +    +    ++  G  L  +     R
Sbjct: 278 SAGFRELVLKKSLAPSSLSIVYSVSVDQVLERIRMLIINAIILNILTGAMLFALARMYER 337

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWK 468
              I    +         +     +   + +     G+ +    DG   LSN     L  
Sbjct: 338 RIFIPAEND-------AQRLEEHEQFNRKIVASAPVGICILRTVDGTNILSN----ELAH 386

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              N L+     R     C +  N       F  ++TS      +LQ +           
Sbjct: 387 NYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTS---NHTNLQISFVHSRYRNENV 436

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  II
Sbjct: 437 AI---------CVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGII 487

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  DLL+T    +L     + V  ++ SS++LL +++DILD + +++  +K+        
Sbjct: 488 GNLDLLQTK---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPR 544

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++N +  +    +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  
Sbjct: 545 EVMNHISANYLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG-C 603

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           +IL           SV++ G  IP      +F+ F       +   +G GLGL+I E  I
Sbjct: 604 IILHVQCAGDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLI 663

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
           ++  G +++ +     +    RIP 
Sbjct: 664 SMMDGDIAVETEPGMGSRFTIRIPL 688


>gi|254227606|ref|ZP_04921037.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395654|ref|YP_003287507.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|151939648|gb|EDN58475.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339248|gb|ACY53042.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 785

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 123/266 (46%), Gaps = 7/266 (2%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +++ L +A    +   + +  +    + E      +A + K+SF+  +S+ELR+P+  +
Sbjct: 229 IAVMLLVSAFLYQSQYRMYNLKQLNLEIEEARNKAERAAKAKSSFLAAMSHELRTPMNGV 288

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G + ++             +YV+ I  S   L+ ++NDILD + V+   ++   +   L
Sbjct: 289 LGLSQMIAEETNEPTT---KEYVKVILDSGQHLMTILNDILDFSKVEENKLEFEQAKFNL 345

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + +++ V  +I   + E NI + V ++  +   F  D  RL QI   +  NA+ F+S+G 
Sbjct: 346 DQVISPVCSAIKPLIDEKNIELIVENEVPEYVEFTGDCARLRQILFNLAGNAVKFTSEGH 405

Query: 707 T-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
             +  +  + N   +  V + G  I  D  + VFN F        R   G GLGL+IV+ 
Sbjct: 406 VLIRTELDKVNHCLVMIVSDTGIGIALDKQEHVFNSFEQADSSTTRKFGGTGLGLAIVKK 465

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
              L  G +++ S +   +     +P
Sbjct: 466 LTGLMDGKITLKSVEGVGSQFIVELP 491


>gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 1368

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 117/242 (48%), Gaps = 4/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+  A   + E L + D  K +F  ++S+E R+PLT I+G  + L+T   G+ ++   + 
Sbjct: 317 RSYEAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPVEELRTQLAGA-DAHIREE 375

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +   L  LVN +LD + ++AG M+  Y    L+ +  ++     + + +  +  
Sbjct: 376 LDVVHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPTDLSLVTADLASVFRSAIDKAGLGF 435

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +           DR    ++   +LSNA+ F+  GS + +    ++   + +V + G  
Sbjct: 436 HIDCAPLPEPVYTDRGMWEKVILNLLSNALKFTFDGS-IRVTVHAEDTHAVVTVADTGIG 494

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +P      +F RF    NA      G G+GL++V+  + LHGG ++  S++ G T    R
Sbjct: 495 VPAAEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGGGTRFTVR 554

Query: 788 IP 789
           +P
Sbjct: 555 LP 556



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 25/167 (14%)

Query: 297 KEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +   + +      + L  +L  A  + D+   +   N +F ++   D   L   P +   
Sbjct: 736 ELARLRNHQARWRKALVDSLQEAFFVCDEEGAVIEINTAFTDILGYDPEGLPYQPVHPWW 795

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----NGQTLHVIVT----SN 407
            +    A+  PE       +E   +  +     K ++ +P    +G  L V  T     +
Sbjct: 796 PD----ADVDPE-----AHREVGEAFAQLLNNPKGSYTIPVAHRDGHRLWVTATFNQAQD 846

Query: 408 PRGG---TIWMFENLTVQ---VDLETKYNTLVKVQGETIDHLSEGVA 448
           P  G   T+  F ++T +   V  E+    L     +    L E +A
Sbjct: 847 PDTGRQVTVGTFRDVTAEHYKVQRESAQAALSMRLTQA-TSLPEALA 892


>gi|146312879|ref|YP_001177953.1| hybrid sensory histidine kinase BarA [Enterobacter sp. 638]
 gi|145319755|gb|ABP61902.1| Hpt sensor hybrid histidine kinase [Enterobacter sp. 638]
          Length = 918

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKSELNPTQRDHLHTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+E+   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEIVTLLAHSSHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSV--KNNGS 728
              +  + + D  RL Q+ + ++ NA+ F+  G+  +L   R   N      V  ++ G 
Sbjct: 395 KNDVPDNVIGDPLRLQQVITNLVGNAIKFTENGNIDVLVEKRAISNNKLQIEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLLKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|298247834|ref|ZP_06971639.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550493|gb|EFH84359.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 754

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/524 (16%), Positives = 198/524 (37%), Gaps = 46/524 (8%)

Query: 288 EAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
             G  +D+++    E  + +       IL ++T A    D      + N+          
Sbjct: 251 VVGATLDITELKHKEEELQEAKDEVTTILESITDAFLCLDSQWRYSYLNQRM-------E 303

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            +L          E  +    L   +    ++    ++     TH + +H    + +   
Sbjct: 304 TYLGKKREEVLGKEMWKVVPMLLGTIFEDRYR---TAMATQQATHFEAFHPAFQRWVETY 360

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           V   P G +I+ F +++ +  +E             ++    G+     +G I  +N AF
Sbjct: 361 VYPQPDGLSIY-FHDISERKQIEEALRESEARFRLLMESNIIGIITTDRNGNILEANAAF 419

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
            SL    +  L+ G    +I  T      +++  +       +   E + L  + + +  
Sbjct: 420 LSLLGYTQEDLATGQMKWDIITTPQTRARDTETIEEALRTGVAQPYEIEYLTKSGKRVP- 478

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           +++  ++     +  +     +  + R E             ++ K+ F+    +ELR+P
Sbjct: 479 ALIGRALFRREGSPPLFLCFVLDQTYRKEA------------EKQKDLFLGITGHELRTP 526

Query: 584 LTNIIGFTDLLKT------SKLGSLNSKQ-------SQYVEYISASSTILLNLVNDILDL 630
           L  + G   L++       +K  +L  +         + +        +   L+ND+LD+
Sbjct: 527 LAALRGTLQLIERRLRRFINKTDNLTPEMVSFFEGIQKNLANGVRQVDVQTRLINDLLDV 586

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + + +G +KL+     L  ++ E  + +     E  + +++  +    + + D+ R+ Q+
Sbjct: 587 SRITSGTLKLSLQRCDLVPIIRETVEDLRLVTPERQLLLEL-PEDTPVNVLVDQNRISQV 645

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--- 747
            +  ++NA+ +SS    V +  A         V+++G  + ++  + V+  F        
Sbjct: 646 ITNYVTNAIRYSSSDQPVHIGLAVQENMARVWVRDHGPGLSKEAQEKVWRCFHQVKEVPV 705

Query: 748 -RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G  +G+GLGL I +  I  H G V + S+    +T    +P 
Sbjct: 706 QSGSEKGLGLGLYICQILIEQHHGEVDVESTPGKGSTFWFSLPL 749



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 111/361 (30%), Gaps = 26/361 (7%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           + G   ++ E   K ++L         + +S+       D      + N    +     G
Sbjct: 251 VVGATLDITELKHKEEELQEAKDEVTTILESITDAFLCLDSQWRYSYLNQ---RMETYLG 307

Query: 231 IVFQKAIGESRK-----LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
              ++ +G+        L     + R  ++ A ++              +  +       
Sbjct: 308 KKREEVLGKEMWKVVPMLLGTIFEDRYRTAMATQQATHFEAFHPAF--QRWVETYVYPQP 365

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEI 341
            G +    D+S+   + + L  +      L     + I   D+N  +   N +F+ L   
Sbjct: 366 DGLSIYFHDISERKQIEEALRESEARFRLLMESNIIGIITTDRNGNILEANAAFLSLLGY 425

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQT 399
               LAT     +++   ++  +  E +  +  +  +   Y+     K    +P   G+ 
Sbjct: 426 TQEDLATGQMKWDIITTPQTRARDTETIE-EALRTGVAQPYEIEYLTKSGKRVPALIGRA 484

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           L     S P    +    + T + + E + +  + + G  +      +      G ++L 
Sbjct: 485 LFRREGSPPL--FLCFVLDQTYRKEAEKQKDLFLGITGHELRTPLAAL-----RGTLQLI 537

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
               R      +N                   N     D+   +I    D  +   GTL+
Sbjct: 538 ERRLRRFINKTDNLTPEMVSFFEGIQKN--LANGVRQVDVQTRLINDLLDVSRITSGTLK 595

Query: 520 L 520
           L
Sbjct: 596 L 596


>gi|313499779|gb|ADR61145.1| Virulence sensor protein bvgS [Pseudomonas putida BIRD-1]
          Length = 1210

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 168/387 (43%), Gaps = 21/387 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E   N  +      ++     + V   +G +K  N ++    +   +++    
Sbjct: 560 IRQRQRAERALNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSDQVIGKK 619

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
              ++ A   +          +  ++ +     K     ++   D  + + I+P  ++  
Sbjct: 620 LKDSLFADSEQ---ARQIQADYQKVMAAGSPLIKDRPLRIKD-RDLTIYHWILPYRDSLG 675

Query: 537 ---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +  ++++++  +    L +  +    A+  K++F+  +S+E+R+P+  +IG  +L
Sbjct: 676 EVQGIIGGWIDISERRQLVLELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLEL 735

Query: 594 -LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            +K +  G ++      +E    S+  LL L+ DILD+  +++G + L    + L  L+ 
Sbjct: 736 AVKRADQGRVD---RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVE 792

Query: 653 EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V +    +  +  + ++V I+       + D  R  Q+ S ++SNA+ F+  G   I  
Sbjct: 793 SVARIFDGQARQKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHGQVRICV 852

Query: 712 AARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESF 764
              D+G          V+++G  I  D  + +FN F+      +G R G GLGL+I  + 
Sbjct: 853 RLLDDGTSTPAVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNL 912

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
             + GG +S+ S ++  T +  ++P +
Sbjct: 913 CEMMGGSLSMKSLEDVGTQVRLKMPLQ 939



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 16/162 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  ++ +     + L++ ++  + L +     ++ RD+ G +   N SY +  +      
Sbjct: 556 LRLQIRQRQRAERALNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSD-- 613

Query: 234 QKAIGESRK--LFKEEIKKRMISSS-----ALEKNFCETVSTLEHGNNKS--YKIVRVLN 284
            + IG+  K  LF +  + R I +      A      +         + +  + I+   +
Sbjct: 614 -QVIGKKLKDSLFADSEQARQIQADYQKVMAAGSPLIKDRPLRIKDRDLTIYHWILPYRD 672

Query: 285 SFGEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
           S GE     G  ID+S+   +  +L    +   +   A + F
Sbjct: 673 SLGEVQGIIGGWIDISERRQLVLELRQAKQQADDANRAKSTF 714


>gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
 gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
          Length = 946

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/565 (18%), Positives = 204/565 (36%), Gaps = 51/565 (9%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L    I++        ++      +      N  + I + +        A+         
Sbjct: 158 LRDVPIERDQALKVLHQRIEQYRNAPQNERGNNLFWISQGVRPGVGYFYALTPVYMANRL 217

Query: 303 DQLTHTYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND- 353
             +    + +         +L +++ IFD N              + +  ++        
Sbjct: 218 QAMLGVEQTIRMESFFTPGSLPMSVTIFDDNGQPLISLAGAEGKIQSEAKWMQERMWFGY 277

Query: 354 --ELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                E +   +  P  L+  +    + +    +    +    ++  G  L  +     R
Sbjct: 278 SAGFRELVLKKSLAPSSLSIVYSVSVDQVLERIRMLIINAIILNILTGAMLFALARMYER 337

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWK 468
              I    +         +     +   + +     G+ +    DG   LSN     L  
Sbjct: 338 RIFIPAEND-------AQRLEEHEQFNRKIVASAPVGICILRTVDGTNILSN----ELAH 386

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              N L+     R     C +  N       F  ++TS      +LQ +           
Sbjct: 387 NYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTS---NHTNLQISFVHSRYRNENV 436

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  II
Sbjct: 437 AI---------CVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGII 487

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  DLL+T    +L     + V  ++ SS++LL +++DILD + +++  +K+        
Sbjct: 488 GNLDLLQTK---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPR 544

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++N +  +    +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  
Sbjct: 545 EVMNHISANYLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG-C 603

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           +IL           SV++ G  IP      +F+ F       +   +G GLGL+I E  I
Sbjct: 604 IILHVQCAGDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLI 663

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
           ++  G +++ +     +    RIP 
Sbjct: 664 SMMDGDIAVETEPGMGSRFTIRIPL 688


>gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
 gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
          Length = 946

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/565 (18%), Positives = 204/565 (36%), Gaps = 51/565 (9%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L    I++        ++      +      N  + I + +        A+         
Sbjct: 158 LRDVPIERDQALKVLHQRIEQYRNAPQNERGNNLFWISQGVRPGVGYFYALTPVYMANRL 217

Query: 303 DQLTHTYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND- 353
             +    + +         +L +++ IFD N              + +  ++        
Sbjct: 218 QAMLGVEQTIRMESFFTPGSLPMSVTIFDDNGQPLISLAGAEGKIQSEAKWMQERMWFGY 277

Query: 354 --ELLEFLRSANKLPEQLN--WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                E +   +  P  L+  +    + +    +    +    ++  G  L  +     R
Sbjct: 278 SAGFRELVLKKSLAPSSLSIVYSVSVDQVLERIRMLIINAIILNILTGAMLFALARMYER 337

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWK 468
              I    +         +     +   + +     G+ +    DG   LSN     L  
Sbjct: 338 RIFIPAEND-------AQRLEEHEQFNRKIVASAPVGICILRTVDGTNILSN----ELAH 386

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              N L+     R     C +  N       F  ++TS      +LQ +           
Sbjct: 387 NYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTS---NHTNLQISFVHSRYRNENV 436

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  II
Sbjct: 437 AI---------CVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGII 487

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  DLL+T    +L     + V  ++ SS++LL +++DILD + +++  +K+        
Sbjct: 488 GNLDLLQTK---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPR 544

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++N +  +    +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  
Sbjct: 545 EVMNHISANYLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG-C 603

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           +IL           SV++ G  IP      +F+ F       +   +G GLGL+I E  I
Sbjct: 604 IILHVQCAGDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLI 663

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
           ++  G +++ +     +    RIP 
Sbjct: 664 SMMDGDIAVETEPGMGSRFTIRIPL 688


>gi|259418142|ref|ZP_05742061.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259347048|gb|EEW58862.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 516

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/534 (16%), Positives = 193/534 (36%), Gaps = 52/534 (9%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
             +  F  +  + + +    +  +  +       +E    +++      +  ++   ++ 
Sbjct: 5   MSVEWFILVT-LCIASAAVAVWFLNPKADAKGMEHEL--LIAD-----GRTDAVFLFDDQ 56

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK-----LSKATEKLRK 136
             I W                    +   D     +W K    +      L ++   LR 
Sbjct: 57  TLIAWS---------------SGARKFLDDNTEDFSWGKLRDKLSRCYPGLPQSPGFLRD 101

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
            G    L          + + R +       I  +  +    A T L        ++  +
Sbjct: 102 VG---SLTLSGTA----EADNREA---HCEWIDGVTRVQLRRAATDLGHVGDDQELTTLR 151

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
                  + VW +     + W N++Y +         QK  G         +   + +  
Sbjct: 152 AAVHQAPYPVWLQSDDARVTWTNLAYDRL-------NQKIRGRGND-TSAPLFPNLDAPM 203

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEIL 312
           +  +    ++   E      Y +       G    A+DV+     EI   + +    +  
Sbjct: 204 SSGRAERVSIELPETDKKLWYNVSTTETEAGWLCHAMDVNAVVDAEIAQRNFVQTLAKTF 263

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             L++ +AIFD+NR L   N   ++L  +  +FL++ P+     + LR    +PE  N+ 
Sbjct: 264 AQLSIGLAIFDRNRQLVLFNPVLIDLTALPASFLSSRPNMMSFFDRLRDQRMMPEPKNYS 323

Query: 373 TWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           +W+  +  + +++    +++TW LP+G    V    +P G   ++FE++T ++ L  ++ 
Sbjct: 324 SWRHQMADLLEAAAEGRYQETWSLPSGSVYSVSGRPHPDGAIAFLFEDITAEITLTRQFR 383

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
           + +++    +DH+ +  AVFG DG +  SN A+ ++WKT+ +       I +   T    
Sbjct: 384 SELELGQSILDHIDDAFAVFGTDGSMVYSNTAYHTMWKTDPDASFAKISITDACRTWQEL 443

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
              +  W      +     +R      +++ +   L   +  L N   M+ F  
Sbjct: 444 SGPTPTWGEVRDFVAGGTSDRSDWWSRVDMRNGEQLLCRVQSLQNGSVMVRFQQ 497


>gi|88707340|gb|ABD49452.1| two-component-like hybrid sensor histidine kinase 1 [Cryptococcus
            neoformans var. grubii]
          Length = 1383

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 12/241 (4%)

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            T+  +    A+  K+ F+ ++S+E+R+P+  IIG T L   S+   L  +Q + +  +S+
Sbjct: 817  TKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESE---LTRQQRENLMIVSS 873

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
             +  LL +++DILD++ ++AG M +      L   +  V +++  K  +N + +    D 
Sbjct: 874  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 933

Query: 676  KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL------KAARDNGDFIFSVKNNGS 728
             +    + D  RL Q+ + ++ NA+ F++KG   +        A  D  +  F V + G 
Sbjct: 934  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKGQVALSCRVKRYVAVADAVELEFCVADTGI 993

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I +D    +F+ F        R   G GLGL+I +  +NL  G + + S     +    
Sbjct: 994  GIKQDKLDVIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESEYGQGSRFYF 1053

Query: 787  R 787
             
Sbjct: 1054 T 1054


>gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
 gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
          Length = 1126

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 132/309 (42%), Gaps = 23/309 (7%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           A    +    +D  D    +  SF   ++S++  ++L+ D                    
Sbjct: 388 AGDLDQEMISTDRKDEIGRLAVSFARMQRSIREKIQLIKD-------------------- 427

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +       +  KN  L  AD++K+ F+   S+ELR+PL  ++G  + L T   G ++
Sbjct: 428 QNEELEANLATIQLKNNELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPIS 487

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +     +E I  S   L +LVND+LD   +  G + +N     L+   + V +     + 
Sbjct: 488 ASHRHQLEIIINSGQRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLG 547

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +IRI    D  L     D QRL Q+   ++ NA+ ++S+G  +++ A+  +      V
Sbjct: 548 NKSIRIINQVDKSLPVVFVDEQRLEQVLYNLIGNAIKYTSEG-KIVISASVVDQFLRVQV 606

Query: 724 KNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP D  + +F   +         R+G GLGLSI    I L GG + +SS     
Sbjct: 607 VDTGHGIPADELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVG 666

Query: 782 TTINCRIPS 790
            T +  +P 
Sbjct: 667 ATFSFTLPL 675


>gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 909

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 123/246 (50%), Gaps = 10/246 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    +   +A+  K++F+ ++S+E+R+P+  IIG  DLL     GSLN+ Q   +  
Sbjct: 256 QELRLAKDNAEQANRAKSAFLANMSHEIRTPMNGIIGVADLLA---AGSLNAHQQNQLTT 312

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           + +S+  LL L+NDILD + ++AG ++L      + + + +V    +    + ++ +   
Sbjct: 313 LRSSADTLLYLLNDILDFSRIEAGGLQLEKLPFSIRETIEQVISVFSPTARKRHLDLWFD 372

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD---NGDFIFSVKNNG 727
            +  L    V DR RL Q+ + +L+NA+ F+  GS  +  ++ +D       +  + + G
Sbjct: 373 IEPSLPDYIVGDRYRLGQVITNLLNNALKFTESGSVRISCRSQQDKNGQNRLLIEITDTG 432

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I       +F+ F    +   RR  G GLGL+IV   + L  G ++  S+    +T +
Sbjct: 433 IGIIAQALADIFSPFRQADNSMSRRFGGSGLGLAIVHDLVALMEGEITAKSTPGRGSTFS 492

Query: 786 CRIPSK 791
             +P +
Sbjct: 493 IDLPLE 498


>gi|296121601|ref|YP_003629379.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296013941|gb|ADG67180.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 803

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 163/410 (39%), Gaps = 47/410 (11%)

Query: 422 QVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-----ENRLS 475
           Q++   ++  + +V+  T+ + +  G+   G     + +N A+R++          +   
Sbjct: 211 QLEDALQHLRVSEVRLRTLSESVPIGIFEAGAGANCRYTNSAWRAIAGMSLEESLTHEWF 270

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITS-----------------FDDERKSLQGTL 518
              H  +  A    +    D  + F+ I  +                 F DE  +  GT+
Sbjct: 271 EFVHEDDREAVRIGWQRGLDELEGFSGIFRNKAPDGSTGWVQIRSNPVFSDEGTTHVGTI 330

Query: 519 ELLSDSV-----LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           E +++ +     L+     L   + +    N     R    L +       A   K+ F+
Sbjct: 331 EDITERIHAEESLKRYAEDLKRLKEIEEQ-NSAHLARVVEELGKAKTQAEDAARTKSEFL 389

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+T I+G+T+LL       +    +  ++ I  ++  LL ++NDILDL+ +
Sbjct: 390 ANMSHEIRTPMTAILGYTELLLEQP--DIAPHAADSLQTIRRNADFLLEIINDILDLSKI 447

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           +A  + +         + N+    +  +  +  +++ V +   +  FV  D  RL QI  
Sbjct: 448 EADKLTIESVRCSPILIANDACALMRIRARDKGLKLVVQTASNVPEFVETDPTRLRQILL 507

Query: 693 KILSNAMDFSSKGSTVILKAARDN------------GDFIFSVKNNGSSIPEDMCKSVFN 740
            +L NA+ F+  G  V L+    N            G   FSV + G  + ++    +F 
Sbjct: 508 NLLGNAVKFTHVG-NVQLRVEYVNPQGTQTGNPDALGGLRFSVCDTGIGMTKEQIGRLFQ 566

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F        R   G GLGL+I      +  G + ++S     +  +  I
Sbjct: 567 PFTQADTSTTRKYGGTGLGLTISRRLARMMHGDIEVTSQVGVGSVFSLHI 616



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 24/242 (9%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +         +  ++ + I         ++ N ++  +  + L    T+   + + E  R
Sbjct: 219 LRVSEVRLRTLSESVPIGIFEAGAGANCRYTNSAWRAIAGMSLEESLTHEWFEFVHEDDR 278

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RGGT--IWM 415
            A ++        W+  +  +   S   ++    P+G T  V + SNP     GT  +  
Sbjct: 279 EAVRI-------GWQRGLDELEGFSGIFRNK--APDGSTGWVQIRSNPVFSDEGTTHVGT 329

Query: 416 FENLTVQVDLET---KYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEE 471
            E++T ++  E    +Y   +K   E  +  S  +A V    G+   +        +T+ 
Sbjct: 330 IEDITERIHAEESLKRYAEDLKRLKEIEEQNSAHLARVVEELGK---AKTQAEDAARTKS 386

Query: 472 NRLSPGTHIRNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             L+  +H      T    Y E   +  D+      S    R++    LE+++D +L+ S
Sbjct: 387 EFLANMSHEIRTPMTAILGYTELLLEQPDIAPHAADSLQTIRRNADFLLEIIND-ILDLS 445

Query: 530 II 531
            I
Sbjct: 446 KI 447


>gi|315054893|ref|XP_003176821.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
 gi|311338667|gb|EFQ97869.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
          Length = 2384

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ ++S++LR+P+T +IG ++LLK +K   L++KQ  YV
Sbjct: 1868 AEVQANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATK---LDAKQDVYV 1924

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669
            E I   +  LL L+NDILD + ++AG MK++   I L   + EV +++     +  +   
Sbjct: 1925 ESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRDKGLTTV 1984

Query: 670  -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
              ++S       + D  RL QIF  +LSN+  F+  GS V ++A  +            V
Sbjct: 1985 EDLVSIDPNLLVMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIIEEDTPEKIRMTCKV 2043

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I E+    +F  F            G GLGLSI ++ I  + GG + + S +  
Sbjct: 2044 ADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGE 2103

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2104 GTTVTFTL 2111


>gi|237730129|ref|ZP_04560610.1| aerobic respiration control sensor protein ArcB [Citrobacter sp.
           30_2]
 gi|226908735|gb|EEH94653.1| aerobic respiration control sensor protein ArcB [Citrobacter sp.
           30_2]
          Length = 783

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 149/374 (39%), Gaps = 16/374 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  + + + +           +D   + V     D      N A   L    E +L    
Sbjct: 145 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVNLK 204

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                +   +    E+D       +  +++       G       +  E   +P  +   
Sbjct: 205 PADVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVPYYDRVG 259

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 260 KRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDT- 316

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   I     + +++   
Sbjct: 317 --DLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLS 374

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +G  V ++A  D G
Sbjct: 375 GLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDQG 433

Query: 718 D-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
           +   F V+++G  IP+D    +F  +         +   G G+GL++ +      GG ++
Sbjct: 434 NMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKNMGGDIT 493

Query: 774 ISSSDEGVTTINCR 787
           +SS     +     
Sbjct: 494 VSSQAGKGSIFTLT 507



 Score = 45.3 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  + + +  E+ E      +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 134 RQETFEQLKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 193

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q    +   ++  E  +++I +   EK F   VS           G    ++I
Sbjct: 194 GKS--EKQLVNLKPADVYSPEAAEKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 249

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 250 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 283


>gi|218708513|ref|YP_002416134.1| aerobic respiration control sensor protein ArcB [Vibrio splendidus
           LGP32]
 gi|218321532|emb|CAV17484.1| aerobic respiration control sensor protein ArcB [Vibrio splendidus
           LGP32]
          Length = 795

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L    E  L   T  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNEDGVFSGCNRAVEELTGKTEKELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   E+D          ++D   +   G       S  E   +P  +     
Sbjct: 202 DVYSKEVAQQVVETDKKVFADNQALTYDQWLEYPDG-----RKSYFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER   E  E+L KA   K +F+  +S+ELR+PL  IIG + +L  S+  
Sbjct: 257 LGLVGFGRDITER--KEHQESLEKASRDKTTFISTISHELRTPLNGIIGLSRMLLDSQ-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q + ++ I  S+  L N+ NDI+D+   D   ++L  + I   D + E++   A 
Sbjct: 313 -LTTEQRKQMQTIKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVVEIESISAL 371

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L S    D  RL Q+   ++SNAM F+  G  V  + A  D   
Sbjct: 372 MAEQKGLRFDLERLSDLPSAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTVSAEIDGDF 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG---QRRGVGLGLSIVESFINLHGGHVS 773
            + +  V++ G  IPE   + +F  +             G G+GL++ +  IN+  GH+ 
Sbjct: 432 ANIMMEVEDTGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLINMMDGHIE 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VTSEEGFGSTFTVSI 506



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R++ G     N + ++ T   G  
Sbjct: 135 DLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNEDGVFSGCNRAVEELT---GKT 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVL--- 283
            ++ +G +   ++ +E+ ++++ +        +    +       G    +++ +V    
Sbjct: 192 EKELVGLTPWDVYSKEVAQQVVETDKKVFADNQALTYDQWLEYPDGRKSYFELRKVPFYS 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKEHQESLEK 278


>gi|319956174|ref|YP_004167437.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319418578|gb|ADV45688.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 800

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 128/249 (51%), Gaps = 12/249 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R   E     ++ ++ K+ F+ ++S+E+R+P+  IIGFT+LLK++    LN +Q ++   
Sbjct: 126 RQAREDRRTAQEENQAKSLFLANMSHEIRTPMNGIIGFTELLKST---PLNDEQQEFANI 182

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  SS  LLN++N+ILDL+ +++  +++ + T   +  L+    +      EN+I +   
Sbjct: 183 IEKSSHNLLNIINNILDLSKIESNKVEVEHITFETHHELDNTIDNFGVVAAENDIELYYF 242

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKN 725
            D  + S    D  ++ +I + +L+NA+ F+  G  + ++  +      D     F V +
Sbjct: 243 IDPSISSRLKGDPTKIKEILTNLLNNAVKFTEAGGEISVEIEKLEATQGDRSLIEFRVID 302

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + ++  K +F  F         +  G GLGL+I + ++ L GG + + S +   +T
Sbjct: 303 TGIGMSQEQIKKIFEPFTQADSSITRKYGGTGLGLTITKEYVELMGGKLLVESEEGKGST 362

Query: 784 INCRIPSKE 792
            +  +P +E
Sbjct: 363 FSFTLPLEE 371


>gi|256393258|ref|YP_003114822.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
 gi|256359484|gb|ACU72981.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
          Length = 1588

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/360 (24%), Positives = 153/360 (42%), Gaps = 22/360 (6%)

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            GV       R    + AF       +   + G ++  I A  +R           AA + 
Sbjct: 850  GVIELASMHRFTPVHRAFLE-----QLMETVGVNVNTIVA-NARTDELLGESQRLAAELQ 903

Query: 506  SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            +   E +  Q  L+  +  + E +   L  +Q         +  +A + L  + + L  A
Sbjct: 904  ARSGELQVRQEQLQTSNAELEEKAA--LLASQNRDIETKNLEIEQARQELETRAQQLSLA 961

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y   I ++ + LL L++
Sbjct: 962  SKYKSEFLANMSHELRTPLNSLLILAQLLAQNSNRNLTPKQVEYAGVIHSAGSDLLQLID 1021

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684
            DILDL+ V+AG M ++   + L  LL+ V+ +      +  +   V  + G  G  + D 
Sbjct: 1022 DILDLSKVEAGKMNVDPERVSLQRLLDYVEATFHPLTTQKGLEFSVRTASGMPGQMLTDD 1081

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDFIFSVKNNGSSIPED 733
             RL Q+   +LSNA+ F+  G   +           L          F VK+ G  IPE 
Sbjct: 1082 SRLRQVLRNLLSNAVKFTETGGVELSIEPAAPEELPLGVRDSGPALAFRVKDTGIGIPEQ 1141

Query: 734  MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +++F  F         +  G GLGLSI      L GG ++  S+    +T    +P +
Sbjct: 1142 QLETIFGAFQQADGTTSRKYGGTGLGLSISREIAQLLGGAITAQSALGEGSTFTLYLPIE 1201


>gi|309789683|ref|ZP_07684263.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228169|gb|EFO81817.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 526

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 139/362 (38%), Gaps = 13/362 (3%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +     I+  ++G  +     RI   N A   L           +    I   C+  
Sbjct: 166 REKQRLDAMIEQSADGALIIDSRWRITTFNKAMEQLTGW--------SREEAIGRPCAEI 217

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
                       +      +R  L+  L  +   +       +              S  
Sbjct: 218 LAIQGAQGENICLTACPLQQRPPLENPL--VEGQITSRDGREIFVQSRYAAQYGPGGSFL 275

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
              A      A R+  E++N+F+  +S+EL++P++ I G+   L  +          + +
Sbjct: 276 GAIANVRDVTAQRREAELQNTFISVISHELKTPVSIIKGYASTLARTDATFSPDMLREGL 335

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I   +  L   + D+LD++ + AG  +L+     L+ L+ +V +S A ++ E +   +
Sbjct: 336 TVIEEEADRLARQIQDLLDVSRLAAGGARLDRCDFALSSLVADVVRSFAAQV-EGHFEFE 394

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +     +     D +RL Q+ S ++SNA+ +S +G T+ + A  +    +  V + G  I
Sbjct: 395 LRLADDMPPIHGDYERLRQVLSNLISNAIKYSPEGGTIRIGARAEAERAVVYVADQGIGI 454

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  + +F RF    +  R Q +G GLGL +  + I  HGG + + S           +
Sbjct: 455 APEEHEQIFQRFYRVDNRLRRQTQGSGLGLYLARAIIEAHGGRIWVESQLGRGARFLFTL 514

Query: 789 PS 790
           P 
Sbjct: 515 PL 516


>gi|253989039|ref|YP_003040395.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780489|emb|CAQ83651.1| sensor protein [Photorhabdus asymbiotica]
          Length = 943

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 162/367 (44%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L       L+     R I   
Sbjct: 352 RLEEHEQFNHKIVASAPVGISILRVSDGSNILSN----ELAHNYLKMLTHEDRERIIHII 407

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  +  D       ++TS ++    LQ +         E +I            V+++
Sbjct: 408 CDRTSSYVD-------VVTSNNNH---LQISFVHSRYRNEEVAI---------CVLVDIS 448

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             VR E++L E   A  +A   K+ F+  VS+ELR+PL  IIG  +LL+     SL ++ 
Sbjct: 449 ARVRMEKSLQEMALASEQASYSKSMFLATVSHELRTPLYGIIGNLELLQAH---SLPAES 505

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ +  ++ SS +LL +++DILD + +++  +K+        ++++ V  +    + + +
Sbjct: 506 ARLLSTMNNSSALLLKIISDILDFSKIESKQLKIEPKEFSCQEVISHVISNYLPLVVKKS 565

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  + +++  D  RL Q+ S +L+NA+ F+  G  V +    D       V++
Sbjct: 566 LSLYCYIEPDVPNYIRNDPVRLQQVISNLLNNAIKFTDTG-CVAIHVVVDKDYLYVRVRD 624

Query: 726 NGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +     +F+ F           +G GLGL+I E  INL  G + + S  +  + 
Sbjct: 625 TGVGISDKELIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQPQIGSM 684

Query: 784 INCRIPS 790
            + R+P 
Sbjct: 685 FSIRLPL 691


>gi|149280501|ref|ZP_01886619.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
 gi|149228745|gb|EDM34146.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
          Length = 643

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/610 (16%), Positives = 217/610 (35%), Gaps = 56/610 (9%)

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI-------SSSALEKNFCETVSTL 269
           + N S++K  E  G    +   ++ +    +   R+         SS     +   + + 
Sbjct: 48  FENNSFRKREELLGEGLFEIFPDNVESPDGKENARLALMDVIASKSSVALPVYKYEIFSP 107

Query: 270 EHGNNKSYKIVR----VLNSFGEAGI----AIDVSKEITVND-----------QLTHTYE 310
           E G+  ++        VL+  GE        ++++++  + +           Q     +
Sbjct: 108 EAGDMVAHYWSNTNQPVLDETGEVAYIINTTVNITRQELLRELNASSKEYLLKQQERINK 167

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +  N  V +A+F Q+  +++ N +   +W        T  S  +L+  L    KL    +
Sbjct: 168 MFLNAPVGMALFTQDYVIEYANEAICRMWNKGGPKEVTGKSIFQLIPSL-EDTKLKSIFD 226

Query: 371 WKTWKENIFSVYKSSETH----KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
                 N +   +S  ++    K   +  +     +        G + +   +T QV   
Sbjct: 227 RVMESGNAYISKESPVSYNRNGKVAVYYFDLHFEPIYGLEKEVTGFLSLVNEVTEQVVAR 286

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPD---GRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            K     +      +    G+  +  D   G+I  S              L         
Sbjct: 287 RKIENAEERLRLASEAT--GIGSWDLDLQTGKIIYS--------PIMAELLGHSGKFDLS 336

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                   +  D      A   + +      Q  +    + V    ++     +   + +
Sbjct: 337 QEELWMLVHPDDIHQANHAFEEAMETGIYHCQCRILRPDEQVFWIGVMGKVQYEQDKSPI 396

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +  +V             ++ +  KN F+   S+EL++PLT++  +   LKT K  +  
Sbjct: 397 RMIGTV-------MDITESKQEEIKKNDFIAIASHELKTPLTSLKAYAQFLKTGKNVTDP 449

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
              S     I      +  LV   LDL+ +++G +++      LN L+ EV       + 
Sbjct: 450 GFVSSIAGRIEGQINKMTKLVYSFLDLSRIESGKIEILMEDFDLNQLIREVADDY--VLQ 507

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           E N  ++     +L    ADR +++Q+   ++SNA+ +S +G  V + A  + G  + +V
Sbjct: 508 EKNHPLRFE-PTELPLIRADRNKVMQVIDNLISNAIKYSPQGGAVTIHATNEQGFLVVNV 566

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  I  +    +F R+            G G+GL +    I  H G + + S     
Sbjct: 567 EDHGIGIDNNHVTKIFERYYRIDDLQVKNASGFGIGLYLCADIIKRHHGEIGLHSEPGKG 626

Query: 782 TTINCRIPSK 791
           +    ++P +
Sbjct: 627 SNFYFKLPLQ 636


>gi|77359030|ref|YP_338605.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873941|emb|CAI85162.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 905

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 14/248 (5%)

Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER  +L +  +    A+  K+ F+ ++S+E+R+PL  +IGF+ L +     +       
Sbjct: 517 AERTYSLAQAKKQSDLANRAKSQFLANMSHEIRTPLNAVIGFSSLARKEDDANT---LID 573

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I++SS  LLNL+NDILD++ +++  + L      L  L+  +            I 
Sbjct: 574 YLDKINSSSKSLLNLINDILDISKIESKRLVLERIPFDLTALIQRINTMFEQSAASKAIV 633

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFS 722
            K+ S+  K   FV D  RL QI   + SNA+ F++ GS V L       A +      +
Sbjct: 634 WKINSNIPKDTWFVGDPMRLEQIMLNLCSNAIKFTNAGS-VTLNVDTQLIAPNKAQLTIA 692

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I     + +F+ F    +   R   G GLGL+I +    L   ++++ S  + 
Sbjct: 693 VIDTGIGIKATQHEKLFSAFTQADNSTSRQFGGTGLGLAIAKELSVLMNANIALHSELDK 752

Query: 781 VTTINCRI 788
            +T    +
Sbjct: 753 GSTFTFTL 760


>gi|254239958|ref|ZP_04933280.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
 gi|126193336|gb|EAZ57399.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
          Length = 651

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L    E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++      +Q
Sbjct: 244 EQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQ---TREQ 300

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    + S+  LL ++NDILD + ++ G ++L      L +L+            +  
Sbjct: 301 AEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRG 360

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++     L       D  R+ QI   +L NA+ F+ +G+  + L+    + D +   
Sbjct: 361 LALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLT 420

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  I  +  + +F+ F         +  G GLGL+I  +     GG +   S +
Sbjct: 421 CAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKE 480

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 481 GSGSTFTLEIPL 492


>gi|294645464|ref|ZP_06723165.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292639165|gb|EFF57482.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 911

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 149/344 (43%), Gaps = 16/344 (4%)

Query: 449 VFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           V+  +G     N     S  +   + L PG ++  + A  +         + F  II  +
Sbjct: 272 VYKLEGFETEWNYSRHVSFARASYSNLPPGEYVFKVKACNNNGKWSEATTEFFVHIIPMW 331

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
              +     TL +     L   +I    A+  +      + +   +        + +  +
Sbjct: 332 --YQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIERNK--------IEEISQ 381

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            K  F  ++S+ELR+PL+ I+   + LL  S L     +Q   ++Y+  +   LL++VN 
Sbjct: 382 EKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQ 439

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD    +AG M ++ + + + +LL +          +  I   + SD +   F ADR  
Sbjct: 440 LLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISFHIKSDLEGRLFPADRTY 499

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           +  I   +LSNA  F+  G ++ L    +   + F+V+++G  +  +    +F RF    
Sbjct: 500 VETILMNLLSNAFKFTPDGGSISLSLWTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQVD 559

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             GQR+G G+GLS+V+  +  H G ++++S     T     +P+
Sbjct: 560 --GQRKGTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKVTLPA 601


>gi|291618164|ref|YP_003520906.1| RcsC [Pantoea ananatis LMG 20103]
 gi|291153194|gb|ADD77778.1| RcsC [Pantoea ananatis LMG 20103]
          Length = 949

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 128/254 (50%), Gaps = 7/254 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   V+V+  VR E++L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +
Sbjct: 440 ICVLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQ 499

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S     V  ++ SS++LL +++DILD + +++  +K+        +++  +  + 
Sbjct: 500 ---LPSGIDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNY 556

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + + +  + +    +  +  +   D  RL Q+ S +L+NA+ F+  G  +IL A    G
Sbjct: 557 LSLVVKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYVTQG 615

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F  ++ G  IP      +F+ F    +  +   +G GLGL+I E  IN+  G + + 
Sbjct: 616 YLAFRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVE 675

Query: 776 SSDEGVTTINCRIP 789
           S     +    RIP
Sbjct: 676 SEPGMGSQFIVRIP 689


>gi|262408173|ref|ZP_06084720.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|294806731|ref|ZP_06765558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|262353725|gb|EEZ02818.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|294446013|gb|EFG14653.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1365

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 149/344 (43%), Gaps = 16/344 (4%)

Query: 449  VFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            V+  +G     N     S  +   + L PG ++  + A  +         + F  II  +
Sbjct: 726  VYKLEGFETEWNYSRHVSFARASYSNLPPGEYVFKVKACNNNGKWSEATTEFFVHIIPMW 785

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +     TL +     L   +I    A+  +      + +   +        + +  +
Sbjct: 786  --YQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIERNK--------IEEISQ 835

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F  ++S+ELR+PL+ I+   + LL  S L     +Q   ++Y+  +   LL++VN 
Sbjct: 836  EKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQ 893

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD    +AG M ++ + + + +LL +          +  I   + SD +   F ADR  
Sbjct: 894  LLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISFHIKSDLEGRLFPADRTY 953

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +  I   +LSNA  F+  G ++ L    +   + F+V+++G  +  +    +F RF    
Sbjct: 954  VETILMNLLSNAFKFTPDGGSISLSLWTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQVD 1013

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              GQR+G G+GLS+V+  +  H G ++++S     T     +P+
Sbjct: 1014 --GQRKGTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKVTLPA 1055


>gi|237714341|ref|ZP_04544822.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229445505|gb|EEO51296.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1343

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 149/344 (43%), Gaps = 16/344 (4%)

Query: 449  VFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            V+  +G     N     S  +   + L PG ++  + A  +         + F  II  +
Sbjct: 704  VYKLEGFETEWNYSRHVSFARASYSNLPPGEYVFKVKACNNNGKWSEATTEFFVHIIPMW 763

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +     TL +     L   +I    A+  +      + +   +        + +  +
Sbjct: 764  --YQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIERNK--------IEEISQ 813

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F  ++S+ELR+PL+ I+   + LL  S L     +Q   ++Y+  +   LL++VN 
Sbjct: 814  EKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQ 871

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD    +AG M ++ + + + +LL +          +  I   + SD +   F ADR  
Sbjct: 872  LLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISFHIKSDLEGRLFPADRTY 931

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +  I   +LSNA  F+  G ++ L    +   + F+V+++G  +  +    +F RF    
Sbjct: 932  VETILMNLLSNAFKFTPDGGSISLSLWTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQVD 991

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              GQR+G G+GLS+V+  +  H G ++++S     T     +P+
Sbjct: 992  --GQRKGTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKVTLPA 1033


>gi|196047270|ref|ZP_03114485.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196021895|gb|EDX60587.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 453

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 215 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 274 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++
Sbjct: 334 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDD 391

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 392 GIGIAKEHLPYIEQSFYQINNHTT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 449

Query: 787 RIPS 790
           ++P 
Sbjct: 450 KLPL 453


>gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 916

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTDLNATQRDHLTTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  +L   R            + + G 
Sbjct: 395 KNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|150015251|ref|YP_001307505.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901716|gb|ABR32549.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 682

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 155/372 (41%), Gaps = 19/372 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     I++    + V   + +   +N     L   E+     G  I  I    ++   
Sbjct: 288 EECLNMIINNSDNAIFVIS-NNKFIFANEKMAELLGAEKVEEIIGIDIEKIITDEAKGAV 346

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLPNAQTMLTFVNVTDSV 549
                +     +++   E K     L  L   +++  +     +   Q     +    + 
Sbjct: 347 YRRIDNAICNKLSTPFVESK-----LLRLDGKIVDIEVTNSFCMYKGQPSAMVMLRDITS 401

Query: 550 RAERALTEKNEALRKA--------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           R +  L E N    K         +++   F  ++S+EL++PL  ++G   +L  S    
Sbjct: 402 RKQIQLLESNIEENKKLISKATELNKMMTEFFSNISHELKTPLNVLLGAVQILSLSGNDK 461

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +  +Y++ +  +   L+ LVN+++D++  D+G  K+N     +  ++ ++  S+A  
Sbjct: 462 NKLESGKYLKTMKQNCYRLVRLVNNLIDISKFDSGYFKMNLQNYNVVSVIEDITLSVADY 521

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +   I +   +D +      D  ++ +I   +LSNA+ F+ KG  +++       + + 
Sbjct: 522 ANNKGIDLIFDTDVEEKDMAIDLDKIERIMLNLLSNAIKFTDKGGQILVNMYDKKDNIVI 581

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SVK+NG  +P+D    +F RF           +G G+GLS+V+S +++H G +   S   
Sbjct: 582 SVKDNGVGMPKDKLNMIFERFGQIDKTLARNSQGSGIGLSLVKSIVDMHNGDIKAFSEFG 641

Query: 780 GVTTINCRIPSK 791
             +    ++P +
Sbjct: 642 KGSEFVVKLPVR 653


>gi|300718124|ref|YP_003742927.1| Signal transduction histidine-protein kinase [Erwinia billingiae
           Eb661]
 gi|299063960|emb|CAX61080.1| Signal transduction histidine-protein kinase [Erwinia billingiae
           Eb661]
          Length = 908

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LN  Q  Y+  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTPLNITQRDYLHTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++AG + L      L D L+EV   +A   HE  + + +  
Sbjct: 335 ERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRDTLDEVVVLLAQSAHEKGLELTLSI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNGDFIFSVKNNGS 728
             ++  + + D  RL QI   +L NA+ F+ +G+  + ++      +  +    + + G 
Sbjct: 395 QPEVPDNTIGDPLRLQQIIINLLGNAIKFTERGNIDIRIELRSLSTNRVNLEVQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +S+ S     +T   
Sbjct: 455 GISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISLHSRMNQGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 NI 516


>gi|290960529|ref|YP_003491711.1| sensor kinase [Streptomyces scabiei 87.22]
 gi|260650055|emb|CBG73171.1| putative sensor kinase [Streptomyces scabiei 87.22]
          Length = 1391

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 115/261 (44%), Gaps = 16/261 (6%)

Query: 544  NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
               +  R+   L EK   L  + + K+ F+ ++S+ELR+PL +++    LL  +  G L 
Sbjct: 917  QQAELRRSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLT 976

Query: 604  SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             ++ Q+   I  S + LL L+NDILDL+ ++AG M +    + L  LL+ V  +      
Sbjct: 977  DQEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPLTL 1036

Query: 664  ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------- 714
            +  +  +V     +     +D QRL QI   +LSNA+ F++ G  V L   R        
Sbjct: 1037 DRGLAFEVAVGENVPREMYSDEQRLQQILRNLLSNAIKFTASG-RVELAVNRVKDPDHRF 1095

Query: 715  ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                 +    F+V + G  I  +    +F  F        R   G GLGLSI      L 
Sbjct: 1096 TREHHDEVIAFAVSDTGIGIAAEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLL 1155

Query: 769  GGHVSISSSDEGVTTINCRIP 789
            GG +   S     +T    +P
Sbjct: 1156 GGRIIAESVPGKGSTFTLYVP 1176


>gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 916

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTDLNATQRDHLTTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  +L   R            + + G 
Sbjct: 395 KNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|125623280|ref|YP_001031763.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492088|emb|CAL97017.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070031|gb|ADJ59431.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 475

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 155/387 (40%), Gaps = 41/387 (10%)

Query: 417 ENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           E++   Q +LE + N L       + ++ +GV      G I ++N +      T  N L 
Sbjct: 99  EDIVRTQNNLENQRNQL----DSILAYMVDGVIATDRRGNIIMANKSALHYLNTS-NELL 153

Query: 476 PGTHIRNIAATCSRY--YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              +I ++     +Y  Y+  +             +E  SL     L        S I  
Sbjct: 154 MEKNIVDVLKIADQYNFYDLLEKEPEITIETHDAGNESISLHIKFALFRRESGFISGI-- 211

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    ++T   +AER               +  FV +VS+ELR+PLT++  + + 
Sbjct: 212 -----IAVLHDMTKQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEA 252

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+   +       S ++      +  ++ +++D+L L+ +D   + LN   I L   L+ 
Sbjct: 253 LEDGAIDD-KETASSFIGVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEIINLIAFLDY 311

Query: 654 VKQSIATKMH-------ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
               +   +         +N  +      K      D  ++ Q+   I+ NA+ +S KG 
Sbjct: 312 QINRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDTDKIAQVIDNIIGNAIKYSPKGG 371

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVES 763
           T+ +       D + S+K+ G  IP+     +F+RF      +   +  G GLGLSIV  
Sbjct: 372 TITIYVETRERDVLISIKDEGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHD 431

Query: 764 FINLHGGHVSISSS-DEGVTTINCRIP 789
            + +HGG +  SS  +   TT +  +P
Sbjct: 432 IVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|146313279|ref|YP_001178353.1| aerobic respiration control sensor protein ArcB [Enterobacter sp.
           638]
 gi|145320155|gb|ABP62302.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter sp. 638]
          Length = 777

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 22/379 (5%)

Query: 421 VQVDLETKYNTLVKVQ--------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            Q+ +E K   + ++Q           +D   + V     D      N A   L    E 
Sbjct: 134 EQLKIEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEK 193

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +L         +A  +    E+D       +  +++       G       +  E   +P
Sbjct: 194 QLIHLKPQDVYSAEAAVKVIETDEKVFRHNVSLTYEQWLDYPDG-----RKACFEIRKVP 248

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +       +        ER      +AL +A   K +F+  +S+ELR+PL  I+G + 
Sbjct: 249 YYDRVGKRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLNGIVGLSR 306

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L  ++   L S+Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +     L 
Sbjct: 307 ILLDTE---LTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLA 363

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +++     +  +  +R  +     L    V D  RL QI   ++SNA+ F+ +G  V+  
Sbjct: 364 DLENLSGLQAQQKGLRFVLEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQGEVVVRI 423

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLH 768
                    F V+++G  IP+D    +F  +         +   G G+GL++        
Sbjct: 424 RFDQGDMLHFEVQDSGIGIPQDEHDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKSM 483

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG +++SS     +T    
Sbjct: 484 GGDITVSSQQGKGSTFTLT 502



 Score = 44.5 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 17/154 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R  +L+ +  E+ E  +   +L    S  +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQATLEQLKIEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
                  Q    + + ++  E   ++I +   EK F   VS           G    ++I
Sbjct: 189 GKS--EKQLIHLKPQDVYSAEAAVKVIETD--EKVFRHNVSLTYEQWLDYPDGRKACFEI 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L  
Sbjct: 245 RKVPYYDRVGKRHGLMGFGRDITERKRYQDALER 278


>gi|294665326|ref|ZP_06730618.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604919|gb|EFF48278.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1068

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K G+L+++Q +Y 
Sbjct: 359 AQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVKYA 418

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L   T+V   +L  ++++      +  + ++
Sbjct: 419 QAILSSNNDLLALINDILDLSKIEAGHVELADETVVTGSVLQRLRETFEPLARQKGLALE 478

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +  + G     V D QRL QI   +L+NA+ F+  G   +   A   G   F+V + G  
Sbjct: 479 ITAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKVGLTVQAHAPGRVRFAVTDTGIG 538

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 539 IAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLE 598

Query: 788 IPS 790
           +P+
Sbjct: 599 LPT 601


>gi|295094505|emb|CBK83596.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 624

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 11/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L    +   KA+  K  F+  +S+++R+P+  IIGFTDLL  +   S   K   Y
Sbjct: 231 KANHELENALDMANKANNAKTVFLNSMSHDIRTPMNAIIGFTDLLNDNL--SDQDKARDY 288

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I +SS  LL+L+N++L++A +++G  +L+ S+I L  L + V     ++M E NI  
Sbjct: 289 IAKIRSSSDYLLSLINNVLEMARIESGKTELDESSISLKSL-DSVYWLFESQMKEKNIDF 347

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFS--V 723
               + K  + + D  ++ +I   I++NA  +S  G +V +K        +G       V
Sbjct: 348 TWNVNVKHNNILCDVVKIKEILMNIINNAYKYSLPGDSVAVKIDELPCDRDGYVRIRTVV 407

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  + ED  + +F  F       +    G GLG++IV+  ++L GG + + S     
Sbjct: 408 SDTGIGMSEDFLEHIFEDFSREQTSTESGQFGTGLGMAIVKKIVDLMGGDIDVQSEPGKG 467

Query: 782 TTINCRI 788
           TT    +
Sbjct: 468 TTFTVTL 474


>gi|190571186|ref|YP_001975544.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357458|emb|CAQ54892.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 475

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 19/378 (5%)

Query: 429 YNTLVKVQGETIDHLSE----GVAVFGPDGRIKLSN-----PAFRSLWKTEENR-LSPGT 478
            N LVK++ E +  +S+     + ++  + R+  SN       +  L   +E   L    
Sbjct: 86  INQLVKLRAELLQSVSKVRNFSLILYDQNARVIFSNFNTQGHDYEQLLTNDEIDKLLSNQ 145

Query: 479 HI-----RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            I       + +T   ++ +      F  II S++D    +     +L   +L   I+ +
Sbjct: 146 EIFYATGNTLTSTFPIFHEDDIKPSFFLKIIQSYNDSYIMVYSLFSILMGLLLVILILIM 205

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                  T + +    +    L    EAL + +  K  F   V++ELR+PL  IIGF  L
Sbjct: 206 LYLHFSNTQM-LAKQHKTNIELQRVKEALEQENANKIKFFASVTHELRTPLNAIIGFAKL 264

Query: 594 LKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +K   LGS++ SK  +YV+ I  + T LL L+ND+LD +  ++  + +      LN +++
Sbjct: 265 IKNETLGSVDHSKYKEYVDDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIID 324

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--IL 710
              + ++ K+ E  I +K     K    +AD +R+ Q+   +LSNA+ F+ +G  +  I+
Sbjct: 325 SCLKMLSPKLKETGISLKKEISDKQLLVIADPKRMKQVIINLLSNAIKFTPQGGLIRMII 384

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
           K   +         +NG  I +     V + F       +  G G+GL + +  + L GG
Sbjct: 385 KENIEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRNEGTGIGLPLSKKLVELMGG 444

Query: 771 HVSISSSDEGVTTINCRI 788
             +I S  +  TTI    
Sbjct: 445 TFNIQSEAKLGTTITLSF 462


>gi|134100028|ref|YP_001105689.1| sensor histidine kinase/response regulator [Saccharopolyspora
            erythraea NRRL 2338]
 gi|133912651|emb|CAM02764.1| sensor histidine kinase/response regulator [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 1326

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/330 (25%), Positives = 142/330 (43%), Gaps = 18/330 (5%)

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            G  +  I A  SR           A  + +  ++ +  Q  L+  +  + E +   L  +
Sbjct: 790  GVDVNTIVA-NSRTEALLGESQHLAQELQARSEQLQRQQIELQRSNTELEEKAA--LLAS 846

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +     +   +  +A + L E+   L +A   K+ F+ ++S+ELR+PL + +    LL  
Sbjct: 847  RNRDIELKNIEIEQARQELEERAHELSQASTYKSDFLANMSHELRTPLNSALILAKLLAD 906

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  G+L  +Q    + I ++ T LL L+ND+LDL+ V+AG M L    + L++L   V+ 
Sbjct: 907  NMEGNLTPQQVDLAKTIHSAGTDLLQLINDVLDLSKVEAGHMSLLPEDVELSELTEHVES 966

Query: 657  SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------- 707
                   +  +   V+    L      DR RL QI   +LSNA+ F+ KG          
Sbjct: 967  LYRPLTEDKGLEFSVVLSPSLPPSLRTDRNRLEQILRNMLSNAVKFTDKGKVELRIRPAP 1026

Query: 708  ---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
               V + A R       F+V++ G  IP D    +F  F         +  G GLGLSI 
Sbjct: 1027 ATEVTVPALRSAARRVAFAVRDTGIGIPSDKLSRIFEAFQQLDGTTSRKYGGTGLGLSIS 1086

Query: 762  ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 L GG + + S     +T    +P +
Sbjct: 1087 RELTTLLGGELQVRSDVGVGSTFTLYLPVE 1116


>gi|47527271|ref|YP_018620.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184845|ref|YP_028097.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49477455|ref|YP_036139.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196036949|ref|ZP_03104328.1| sensor histidine kinase [Bacillus cereus W]
 gi|254684570|ref|ZP_05148430.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254721328|ref|ZP_05183118.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254741274|ref|ZP_05198962.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254750825|ref|ZP_05202864.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|47502419|gb|AAT31095.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178772|gb|AAT54148.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49329011|gb|AAT59657.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195990438|gb|EDX54427.1| sensor histidine kinase [Bacillus cereus W]
          Length = 453

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 215 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 274 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++
Sbjct: 334 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDD 391

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 392 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 449

Query: 787 RIPS 790
           ++P 
Sbjct: 450 KLPL 453


>gi|302672251|ref|YP_003832211.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302396724|gb|ADL35629.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1031

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 143/334 (42%), Gaps = 22/334 (6%)

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R+L K  +   + G +I  +   C          ++    I            T E L  
Sbjct: 431 RNLDKAHDQEKTDGINIEAVFNKCKETGEAFIQDEIKLENIK-----------TGEHLYY 479

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             +  +       +T +   + T  +R    L E   A   A++ K SF+ ++S++ R+P
Sbjct: 480 RGITVTTFDDGGQRTAIALYDRTQEIRRNHQLQEALNAAETANKAKTSFLANMSHDFRTP 539

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I GF   L   K      K  +Y   IS +S  LL+++ND+LD++ +++G   L+  
Sbjct: 540 MNAITGFN--LLIDKHAEEPDKVKEYTHKISLASQNLLSMLNDVLDMSKIESGKTTLDIK 597

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            + +  LL E+   I+ +    N    V I D +   F+ D+QR+ +I   IL NA+ ++
Sbjct: 598 EVPIGLLLEEINSVISFQAKNKNQEYIVKIEDMQHDIFMGDKQRINEILMNILGNAIKYT 657

Query: 703 SKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGV 754
            +G  +               +  F++K+NG  +  +    +F+ F           +G 
Sbjct: 658 PEGGRIEFTINESPSSSEGFQNVTFTIKDNGIGMKPEYKDKIFDAFSREEKGATKTIQGT 717

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLG++I +S + L GG + + S +   +T    +
Sbjct: 718 GLGMAITKSLVELMGGTIRVDSEEGKGSTFIVNL 751


>gi|254512907|ref|ZP_05124973.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
 gi|221532906|gb|EEE35901.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
          Length = 478

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 2/238 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +++E  R A + K+ FV  +S+ELR+PLT+I G  DL ++ KLG  +   S  ++ 
Sbjct: 235 ELLRKEHEKSRAAYKAKSEFVSTMSHELRTPLTSIKGSVDLAQSGKLGKTSKNVSAALKM 294

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              +   LL L++ ILD  + ++G M        L +L+ +   S+     E  I ++  
Sbjct: 295 AQRNCDRLLKLIDQILDFQSAESGQMTFERQRFDLVELITDTFSSVRPSASEKGISLRSE 354

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D+QRL Q+   IL+NA++FS K S +++    DNG      ++ G  + E
Sbjct: 355 FPDREVEITGDKQRLQQVIDNILTNAINFSPKDSDIVVFLQTDNGKVRILFRDTGIGLSE 414

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                VF+ F        R   G GLGLS+    +  HGG ++   + +  TT    +
Sbjct: 415 SDEARVFDPFTQLDSSDSRSIGGTGLGLSVSRQIVEAHGGTITYHKNSDTGTTFVVEL 472


>gi|182624759|ref|ZP_02952540.1| sensor histidine kinase/response regulator [Clostridium perfringens D
            str. JGS1721]
 gi|177910156|gb|EDT72550.1| sensor histidine kinase/response regulator [Clostridium perfringens D
            str. JGS1721]
          Length = 1093

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLN 603
              +  +  +   +  + + K  + KN +  ++S+ELR+PL  I+    L+K  +K   L 
Sbjct: 837  YIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKEDCLG 896

Query: 604  SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + Y   +  ++  LL ++NDI+D + +++G  KLN     +  L+ +   S+   +
Sbjct: 897  KYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSLKAYI 956

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
             ENN+ I +  + +      D+  + +    +LSNA+ ++    T+ +     +N     
Sbjct: 957  EENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENETVEI 1016

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            ++K+ G  I ++  K +F+RFV      + Q R  G+GL++V+S I LH G + + S   
Sbjct: 1017 AIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVESELN 1076

Query: 780  GVTTINCRIPSKE 792
              +T    +P ++
Sbjct: 1077 KGSTFIITLPIRQ 1089


>gi|168216898|ref|ZP_02642523.1| sensor histidine kinase/response regulator [Clostridium perfringens
            NCTC 8239]
 gi|182381050|gb|EDT78529.1| sensor histidine kinase/response regulator [Clostridium perfringens
            NCTC 8239]
          Length = 1093

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLN 603
              +  +  +   +  + + K  + KN +  ++S+ELR+PL  I+    L+K  +K   L 
Sbjct: 837  YIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKEDCLG 896

Query: 604  SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + Y   +  ++  LL ++NDI+D + +++G  KLN     +  L+ +   S+   +
Sbjct: 897  KYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSLKAYI 956

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
             ENN+ I +  + +      D+  + +    +LSNA+ ++    T+ +     +N     
Sbjct: 957  EENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENETVEI 1016

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            ++K+ G  I ++  K +F+RFV      + Q R  G+GL++V+S I LH G + + S   
Sbjct: 1017 AIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVESELN 1076

Query: 780  GVTTINCRIPSKE 792
              +T    +P ++
Sbjct: 1077 KGSTFIITLPIRQ 1089


>gi|168209416|ref|ZP_02635041.1| sensor histidine kinase/response regulator [Clostridium perfringens B
            str. ATCC 3626]
 gi|168213793|ref|ZP_02639418.1| sensor histidine kinase/response regulator [Clostridium perfringens
            CPE str. F4969]
 gi|170712555|gb|EDT24737.1| sensor histidine kinase/response regulator [Clostridium perfringens B
            str. ATCC 3626]
 gi|170714707|gb|EDT26889.1| sensor histidine kinase/response regulator [Clostridium perfringens
            CPE str. F4969]
          Length = 1093

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLN 603
              +  +  +   +  + + K  + KN +  ++S+ELR+PL  I+    L+K  +K   L 
Sbjct: 837  YIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKEDCLG 896

Query: 604  SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + Y   +  ++  LL ++NDI+D + +++G  KLN     +  L+ +   S+   +
Sbjct: 897  KYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSLKAYI 956

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
             ENN+ I +  + +      D+  + +    +LSNA+ ++    T+ +     +N     
Sbjct: 957  EENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENETVEI 1016

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            ++K+ G  I ++  K +F+RFV      + Q R  G+GL++V+S I LH G + + S   
Sbjct: 1017 AIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVESELN 1076

Query: 780  GVTTINCRIPSKE 792
              +T    +P ++
Sbjct: 1077 KGSTFIITLPIRQ 1089


>gi|169343940|ref|ZP_02864934.1| sensor histidine kinase/response regulator [Clostridium perfringens C
            str. JGS1495]
 gi|169297942|gb|EDS80034.1| sensor histidine kinase/response regulator [Clostridium perfringens C
            str. JGS1495]
          Length = 1093

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLN 603
              +  +  +   +  + + K  + KN +  ++S+ELR+PL  I+    L+K  +K   L 
Sbjct: 837  YIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKEDCLG 896

Query: 604  SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + Y   +  ++  LL ++NDI+D + +++G  KLN     +  L+ +   S+   +
Sbjct: 897  KYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSLKAYI 956

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
             ENN+ I +  + +      D+  + +    +LSNA+ ++    T+ +     +N     
Sbjct: 957  EENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENETVEI 1016

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            ++K+ G  I ++  K +F+RFV      + Q R  G+GL++V+S I LH G + + S   
Sbjct: 1017 AIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVESELN 1076

Query: 780  GVTTINCRIPSKE 792
              +T    +P ++
Sbjct: 1077 KGSTFIITLPIRQ 1089


>gi|146298400|ref|YP_001192991.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146152818|gb|ABQ03672.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 813

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 145/285 (50%), Gaps = 9/285 (3%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           + KSL+   E+++ S +   I+ L  +  +++  + +   +  + L   N   +   + +
Sbjct: 266 KEKSLKKVNEIVTASAIAGLILTLFFSVLIVSDYSKSQVYK--KQLEIANFKTKNLLKSR 323

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
              +  VS++L++PL+ I+G+++LL  S    +N+KQS +++ I  SS  +  LV D+LD
Sbjct: 324 EQLISTVSHDLKTPLSTIVGYSELLGNS---DINTKQSYFIKNIKNSSEYITQLVQDLLD 380

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLL 688
            + ++AG + +      L +++ +  ++I T   + NI + +  D KL +  V D  RL 
Sbjct: 381 FSRIEAGKITIEKVPFFLPEIIEDTARNIQTVYKQKNIDLIINVDEKLNTRVVGDPFRLK 440

Query: 689 QIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           QI S I+ NA  F+ +G   +    + +   F+ ++++ G  I +   K VF  F     
Sbjct: 441 QILSNIIGNAYKFTEEGHIKISSYVSENENFFVITIEDTGIGIEKGNLKLVFEEFAQANE 500

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGLSI +  I+  GG +S+ S+    +T   ++P 
Sbjct: 501 NIEKKYGGTGLGLSICQKIISFMGGRISLESTFGKGSTFEIKVPL 545


>gi|18310494|ref|NP_562428.1| sensor histidine kinase/response regulator [Clostridium perfringens
            str. 13]
 gi|18145174|dbj|BAB81218.1| two-component sensor histidine kinase/response regulator [Clostridium
            perfringens str. 13]
          Length = 1093

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLN 603
              +  +  +   +  + + K  + KN +  ++S+ELR+PL  I+    L+K  +K   L 
Sbjct: 837  YIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKEDCLG 896

Query: 604  SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + Y   +  ++  LL ++NDI+D + +++G  KLN     +  L+ +   S+   +
Sbjct: 897  KYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSLKAYI 956

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
             ENN+ I +  + +      D+  + +    +LSNA+ ++    T+ +     +N     
Sbjct: 957  EENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENETVEI 1016

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            ++K+ G  I ++  K +F+RFV      + Q R  G+GL++V+S I LH G + + S   
Sbjct: 1017 AIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVESELN 1076

Query: 780  GVTTINCRIPSKE 792
              +T    +P ++
Sbjct: 1077 KGSTFIITLPIRQ 1089


>gi|301309034|ref|ZP_07214979.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300833060|gb|EFK63685.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 622

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/414 (22%), Positives = 180/414 (43%), Gaps = 33/414 (7%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL------------VKVQGETIDHLSEGV 447
             + +        I    N++  V+ E     L            + +Q   I   S   
Sbjct: 213 FKLRLVPVHDRYVIIYIRNVSELVEQEKANEALSSKLSESRMMMELALQNSKITTYSFNF 272

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           + F    ++   N  F   + T  + L     I           +  D + LF  I T+ 
Sbjct: 273 SRFKSCDKV-HCNRCF-QFYGTTNSLLKRNQFICQALPQLRHPDDSGDFFYLFNTIRTNK 330

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQ--------TMLTFVNVTDSVRAERALTEKN 559
            DE K +   L+   ++   Y +I   + +         +   ++  + +  E  L    
Sbjct: 331 LDEYK-IDFRLKNDDNTYRIYEVIGKTHEKDENGFPNLIVGCMIDDQERLEFEEDLIRAK 389

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L   +  Y+  I  ++ +
Sbjct: 390 EKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSEL---RQNYISLIKMNNDL 446

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E  + + + +   +  
Sbjct: 447 LLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPE-GVEMTLDACPDII- 504

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKS 737
           F  DR RL QI   +L+NA+  + KG  +        +     F V + G  IP+D   +
Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKG-RIWFGYTIEAEEKMIKFYVSDTGCGIPKDELDN 563

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P K
Sbjct: 564 IFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLPMK 615


>gi|170744479|ref|YP_001773134.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168198753|gb|ACA20700.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1937

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 162/375 (43%), Gaps = 21/375 (5%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              ++   +     +D L+E + +      I  +      L +++       +    +  T
Sbjct: 1117 ASFSRFSETHQSFLDQLTESIGIVL--NTIAANMRTEGLLAQSQLLTSELQSQQEELKKT 1174

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
              R   ++        ++ S   +R+ LQ T E L +         L   Q         
Sbjct: 1175 NDRLETQAASLQQSEDLLKS---QRERLQQTNEELEEKA------RLLEIQKKEVEGKNR 1225

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +   A+ +L EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L+ KQ
Sbjct: 1226 EVSIAKISLEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENREGNLSDKQ 1285

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++   I+A+ + LL+L+NDILDL+ +++G + L    + L DL   + +S      E  
Sbjct: 1286 REFARTINAAGSDLLSLINDILDLSKIESGTVSLELGDVDLQDLAGHLDRSFRPLAEERQ 1345

Query: 667  IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI----- 720
            +   +     L   V  D +RL Q+   +LSNA  F+ KGS  +   + +          
Sbjct: 1346 LAFTIDVAPALPRLVRTDSKRLQQVLRNLLSNAFKFTEKGSVALKLGSAEGSPLRAGSQW 1405

Query: 721  --FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              F+V + G  IPED  + +F  F         +  G GLGL+I      L GG + +SS
Sbjct: 1406 MAFTVTDTGIGIPEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVLSS 1465

Query: 777  SDEGVTTINCRIPSK 791
                 +T    +P +
Sbjct: 1466 RLGQGSTFTLFLPLE 1480


>gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1]
          Length = 1149

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 165/366 (45%), Gaps = 21/366 (5%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
              L +   E ++ +          G + +S  + R   + +E           +     
Sbjct: 359 LRPLQERDEELLERVG---------GNLGMSIESARYRQRLQEVLAETQQLNEELQVQQE 409

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  +  + ++       ++ Q  LE  ++ + E         +T        + 
Sbjct: 410 ELKTANEELEEQSRVLKESQAHLETQQAELEQTNEQLSE---------RTDALDRKNDEL 460

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A+  L  + + L+++ + K+ F+ ++S+ELR+PL + +    LL  +  G+L+ +Q +
Sbjct: 461 SQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSEEQVK 520

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I ++   LLNL+NDILD+A V+AG +++   T  +  L+  ++           + 
Sbjct: 521 FAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLA 580

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +V  + ++  +   DRQRL QI   +LSNA+ F+ +G   +  + +     +F+V++ G
Sbjct: 581 FEVKVEPQVPVTLFTDRQRLEQILKNLLSNALKFTERGQVSMNVSFQAGSGIVFAVRDTG 640

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  +++F  F        RR  G GLGLSI     +L GG +++ SS    +  +
Sbjct: 641 IGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFS 700

Query: 786 CRIPSK 791
             +P +
Sbjct: 701 LILPER 706


>gi|227535594|ref|ZP_03965643.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227186724|gb|EEI66791.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 555

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 151/374 (40%), Gaps = 28/374 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q  L  K           ID+L  GV +   D  + L N A   L              
Sbjct: 203 EQAHLREKVAVRQSSFDRLIDNLPLGVMLIDTDKDVILHNHAMSQLLGH----------- 251

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I      Y ++   + L   I  +F  E+   Q    L +   ++ S+IPL    + L
Sbjct: 252 -QIPQPRHSYLDDVKTYALARMIEHTFRHEKAHHQELTILTTQKSVDASVIPLNQGISRL 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +           +      LR+ ++++  FV +VS+EL++P+T I GF + L      
Sbjct: 311 QVL----------VILYDVTYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLGGAKN 360

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +   +++  I   S  L  L+NDIL L+  D+       +++ L  L+++   ++A 
Sbjct: 361 D-PATLDRFLGIIYDESKRLTQLINDILTLSRPDSNQNV--AASVALKKLVDDALHNLAK 417

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +  IR++V     L   V D ++L QI   +L+NA+ ++     V + A   +    
Sbjct: 418 VIQDKQIRVEVAITPDLL-VVTDERKLTQIVRNLLNNAVFYNRLAGHVTISAQVVDHQLS 476

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  I E     +F RF            G GLGL+IV   +    GHV++ S  
Sbjct: 477 LAVADTGIGISETEQARIFERFYRVDKARSRHNGGTGLGLAIVAELVKSMDGHVAVHSQV 536

Query: 779 EGVTTINCRIPSKE 792
              +T    +P  E
Sbjct: 537 GVGSTFTVTLPVGE 550


>gi|110833833|ref|YP_692692.1| phosphotransferase-histidine kinase family protein [Alcanivorax
           borkumensis SK2]
 gi|110646944|emb|CAL16420.1| phosphotransferase-histidinkinase, family protein [Alcanivorax
           borkumensis SK2]
          Length = 867

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 10/235 (4%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             R   + K+ F+  +S+E+R+PL  +IG  +LL+ +     + +Q +Y+  I ++   L
Sbjct: 362 NARAESQAKSLFLARMSHEIRTPLNGVIGLAELLRET---DPSPRQQEYISLIDSAGRTL 418

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
             L+ND+LD A ++AG ++L      L  LL E  Q       +N   + +  D +  S 
Sbjct: 419 TALINDVLDFAKIEAGKLELVEEHFDLPVLLAECVQMFNLPASDNGTLVILDVDPQTPSD 478

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMC 735
            V D  RL QI   ++ NA+ F+  G  V+ L   R  G+   + FSV + G  + +   
Sbjct: 479 VVGDAIRLRQILINLVGNAVKFTRNGRVVLSLVCRRQYGEAPLYTFSVADTGIGLSQVEQ 538

Query: 736 KSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F RF   +     +  G GLGLSI    + L GG + + S+    +  +  I
Sbjct: 539 AQLFQRFTQASANTAQRYGGTGLGLSISRELVELMGGEIHVHSAPGQGSRFSFSI 593


>gi|213018588|ref|ZP_03334396.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995539|gb|EEB56179.1| sensor histidine kinase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 444

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 167/378 (44%), Gaps = 19/378 (5%)

Query: 429 YNTLVKVQGETIDHLSE----GVAVFGPDGRIKLSN-----PAFRSLWKTEENR-LSPGT 478
            N LVK++ E +  +S+     + ++  + R+  SN       +  L   +E   L    
Sbjct: 55  INQLVKLRAELLQSVSKVRNFSLILYDQNARVIFSNFNTQGHDYEQLLTNDEIDKLLSNQ 114

Query: 479 HI-----RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            I       + +T   ++ +      F  II S++D    +     +L   +L   I+ +
Sbjct: 115 EIFYATGNTLTSTFPIFHEDDIKPSFFLKIIQSYNDSYIMVYSLFSILMGLLLVILILIM 174

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                  T + +    +    L    EAL + +  K  F   V++ELR+PL  IIGF  L
Sbjct: 175 LYLHFSNTQM-LAKQHKTNIELQRVKEALEQENANKIKFFASVTHELRTPLNAIIGFAKL 233

Query: 594 LKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +K   LGS++ SK  +YV+ I  + T LL L+ND+LD +  ++  + +      LN +++
Sbjct: 234 IKNETLGSVDHSKYKEYVDDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIID 293

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--IL 710
              + ++ K+ E  I +K     K    +AD +R+ Q+   +LSNA+ F+ +G  +  I+
Sbjct: 294 SCLKMLSPKLKETGISLKKEISDKQLLVIADPKRMKQVIINLLSNAIKFTPQGGLIRMII 353

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
           K   +         +NG  I +     V + F       +  G G+GL + +  + L GG
Sbjct: 354 KENIEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRNEGTGIGLPLSKKLVELMGG 413

Query: 771 HVSISSSDEGVTTINCRI 788
             +I S  +  TTI    
Sbjct: 414 TFNIQSEAKLGTTITLSF 431


>gi|91203081|emb|CAJ72720.1| similar to two component histidine kinase phoR [Candidatus Kuenenia
           stuttgartiensis]
          Length = 595

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 147/376 (39%), Gaps = 28/376 (7%)

Query: 422 QVDLETKYNT-LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           ++  + +  +   K     I+++++ + V     RI L N    + +   E         
Sbjct: 233 RLQAQQQIISDSEKRLTAIINNMNDAIIVVDLQERILLINNTAMTFFGIAEITPGRDYLW 292

Query: 481 RNIAATCSRYYNESDG--WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             I     +   +        F   I     ++K LQ    LL             +  T
Sbjct: 293 ERIRNETLQILVKQTMKTNTGFTTEIEYASPKKKLLQTQFSLLQ-----------KDNNT 341

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +   D              LRK +  +  FV +VS+ELR+PLT+I G+ + L  + 
Sbjct: 342 IGILIVFHDIT-----------DLRKLENTRKEFVANVSHELRTPLTSIRGYVETLLENY 390

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                   +  ++ I   +  L NL+ DIL+L+ ++   +K+    + + + + ++  + 
Sbjct: 391 AAGGGHTYNS-LKVIMKHTQRLDNLIKDILELSKLETNELKMELHELNIYECIEDILHTY 449

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                E     ++     L +  ++   L Q+ + +L NA+ ++ +   + L  +     
Sbjct: 450 KEHCEEKKQSFRLHISQNLPTVESNEYLLRQLLTNLLDNAIKYTHESGDIRLSISPAEET 509

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V + G  IP +    +F RF         +  G GLGLSIV+  +NLH G + + S
Sbjct: 510 IQIEVSDTGIGIPHEHIPRIFERFYRIDPARSREMGGTGLGLSIVKHIVNLHNGAIKLKS 569

Query: 777 SDEGVTTINCRIPSKE 792
           +    +T    +P K+
Sbjct: 570 TVGKGSTFTVILPQKQ 585



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 8/136 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +++  ++D       I++N+  AI + D    +   N + +  + I        P  D L
Sbjct: 236 AQQQIISDSEKRLTAIINNMNDAIIVVDLQERILLINNTAMTFFGIAE----ITPGRDYL 291

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            E +R+                  +  + +   K            ++   N   G + +
Sbjct: 292 WERIRNETLQILVKQTMKTNTGFTTEIEYASPKKKLLQ----TQFSLLQKDNNTIGILIV 347

Query: 416 FENLTVQVDLETKYNT 431
           F ++T    LE     
Sbjct: 348 FHDITDLRKLENTRKE 363


>gi|303327105|ref|ZP_07357547.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302863093|gb|EFL86025.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 696

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 143/369 (38%), Gaps = 35/369 (9%)

Query: 434 KVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEE-NRLSPGTHIRNIAATCS--- 488
           +   + +D   E V +   D   +  +N A    +              + + A C    
Sbjct: 188 RQLADILDAFVEPVYISDMDTYEVLFTNKALNEQFPLRPGRDQRCFARFQGLDAPCPFCT 247

Query: 489 ----RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
               R  +  D    +  +    +     +   +       +  SI            ++
Sbjct: 248 NAFLRGRDNPDSPHHWVHVNPLSNHTYTIVDRLIRWEDGRRVRLSIA-----------MD 296

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VTD + A+R      E    A   K+ F+  +S+E+R+P+  I+G T L           
Sbjct: 297 VTDVLEAQRE----KELAEAATRAKSEFLARMSHEIRTPMNGILGMTYLALDDNPA---P 349

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +Y+  I  S+  LL ++NDILD + ++AG + ++     L++L+  ++  ++ ++HE
Sbjct: 350 RQREYLRKIRLSAKSLLGIINDILDFSKIEAGKLDISEEDFALDELVQNLRAMLSAQVHE 409

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----F 719
             +   V     +      D  R+ ++   +L NA+ F+S+G  + L    D  D     
Sbjct: 410 KQLSFSVNLARDVPLWLRGDALRITEVLINLLGNALKFTSQGG-ISLDVGTDCRDGAVFL 468

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
            F V++ G  I     +++F  F        RR  G GLGL+I      L  G +   S 
Sbjct: 469 HFMVRDTGIGISAGELENLFQPFTQADSSISRRFGGTGLGLAISRQLARLMDGKLWCESE 528

Query: 778 DEGVTTINC 786
               +  + 
Sbjct: 529 PGKGSVFHF 537


>gi|156743019|ref|YP_001433148.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234347|gb|ABU59130.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 616

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 14/370 (3%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            +   +  +S+GV      GRI   N A +++     +++        I           
Sbjct: 237 ARDMVLQSMSDGVIAVDEQGRIIEVNRAAQTMIGLPASQIIGKHAREVIVQWPEVVARYR 296

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR---- 550
           D  ++   I      ER+     +  + D+   Y              +   +  R    
Sbjct: 297 DMVEVAEEIEVKVGAERRWFNVQISPIYDARRAYRGRLFVWRDVTGERLIREELRRNNER 356

Query: 551 ---AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              A++ALT    A  + + +K+ F+ H+S+E+R+PLT I+G+  LL+        ++  
Sbjct: 357 LLEAQQALTSALRAAEEGNRVKSVFLAHMSHEIRTPLTAIMGYCQLLEAGIERQNLAQTR 416

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +E I  +S  LL+L N++L++A ++AG  +++     + D++ +V  ++   +  N  
Sbjct: 417 ADLEAIRVASGHLLSLANNVLEMAWIEAGRSEVHDIAFEVMDVVLDVIATVQPLIRRNRN 476

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSV 723
            ++V      G    D  ++ QI   ++SNA  F++ G  V ++ A           F V
Sbjct: 477 HLRVEGAEHAGVVQGDPAKVRQILLNLVSNAAKFTT-GGEVAVRVAHIGDALQPRIQFQV 535

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + GS I  D  + +F  F          +RGVGLGL+I   +  L GG +SI S+    
Sbjct: 536 SDTGSGIAPDRIERLFMPFAIAEEHVGRDQRGVGLGLAISRYYCRLMGGDLSIESALGRG 595

Query: 782 TTINCRIPSK 791
           TT+   IP++
Sbjct: 596 TTVTFWIPAR 605



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 108/337 (32%), Gaps = 32/337 (9%)

Query: 217 WANISYKKNTETEGI-VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
           W + +Y       G  +  + I  +  LF+ +I   +I+ +A        ++ L      
Sbjct: 148 WVHTAYSYLCLLCGTGLIVRFIRRTPGLFRGQIGAMLIAVAAPWIGNIIYLAGLSPWGK- 206

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
              +     +     IA  V     +  +      +L +++  +   D+   +   NR+ 
Sbjct: 207 -LDLTPFALTVSLIAIAWSVFSFRLLEIRPIARDMVLQSMSDGVIAVDEQGRIIEVNRAA 265

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             +  +  + +    + + ++       + PE +        +    +     +  W   
Sbjct: 266 QTMIGLPASQIIGKHAREVIV-------QWPEVVARYRDMVEVAEEIEVKVGAERRWF-- 316

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           N Q   +        G ++++ ++T +  +  +     +   E    L+  +        
Sbjct: 317 NVQISPIYDARRAYRGRLFVWRDVTGERLIREELRRNNERLLEAQQALTSAL-------- 368

Query: 456 IKLSNPAFRSLWKTEENRLSPGTH-----IRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                 A     + +   L+  +H     +  I   C       +  +L  A   +  + 
Sbjct: 369 -----RAAEEGNRVKSVFLAHMSHEIRTPLTAIMGYCQLLEAGIERQNL--AQTRADLEA 421

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            +   G L  L+++VLE + I    ++       V D
Sbjct: 422 IRVASGHLLSLANNVLEMAWIEAGRSEVHDIAFEVMD 458


>gi|332143228|ref|YP_004428966.1| Signal transduction histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553250|gb|AEA99968.1| Signal transduction histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 641

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 150/343 (43%), Gaps = 22/343 (6%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
             + +     +++      ++ ++ S   + +    LFA +I S    + +    +  + 
Sbjct: 146 ACAEFAPWNWKVTILQPADSLQSSLSTIASLTSLVTLFAVVIVSLLMGKVTQVFVVSPIE 205

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQH 575
                 S I L + +  +      +  R  R        + +     ++A+  K  F+  
Sbjct: 206 KIKSAASRIALDHKKVNIDLQQNDELGRLARDVEAMSGEIEQYVAQAQQANRAKTDFLAV 265

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I G   LL  +    L  KQ QY   + +S++IL  ++ND+LDL+ +++
Sbjct: 266 MSHEIRTPLNGIQGLATLLLDT---PLTEKQHQYASDLKSSASILATVINDVLDLSKIES 322

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKI 694
           G+ +++ +   L+++L ++   + T    NN R+   S +    +  +D  +L QI   +
Sbjct: 323 GMSEIDVTEFALDNMLRDLITLLGTNASANNTRLVYTSKNMDSVAVTSDITKLRQIIINL 382

Query: 695 LSNAMDFSSKGSTVILKAARD--------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           +SNA+ F+ KG TV + A               + +VK+ G  I  D  + +F++F  + 
Sbjct: 383 VSNAIKFTHKG-TVSISAKLKKPSTEEVCENRLVVAVKDTGIGIEPDRLEHIFDKFTQSD 441

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                +  G GLGL+I      L GG + + S     +     
Sbjct: 442 SSITREYGGTGLGLAIARQLAQLLGGDIKVVSKVGEGSCFTVT 484


>gi|75908367|ref|YP_322663.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702092|gb|ABA21768.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 937

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 115/257 (44%), Gaps = 21/257 (8%)

Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER   +T   E    A+  K+ F+ ++S+ELR+PL  I+G+  +L+     + + +Q Q
Sbjct: 450 AERTAEITAAKETADAANRAKSEFLANMSHELRTPLNGILGYAQILQMD--SNTSDEQMQ 507

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  I    + LL L+NDILD+A ++A  ++L      L  LL    +    K  +  + 
Sbjct: 508 GLNTIYECGSHLLTLINDILDIAKIEAKKLELYPKEFDLRKLLLGACEMCRIKADQKELI 567

Query: 669 IKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG------- 717
            K   + ++ +   AD +R+ Q+   ILSNA+ F+  G+    V + A            
Sbjct: 568 FKYHLNNRIPANIFADEKRIRQVLINILSNAIKFTDHGTVTFDVEVVACTGTKLITNTNQ 627

Query: 718 -----DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGH 771
                   F +++ G  + ++  K +F  F     +  +  G GLGL+I    + L G  
Sbjct: 628 LLPVHQLRFHIEDTGIGMTDEQLKKIFLPFEQVGDNLHKSEGTGLGLAISSQILELMGSD 687

Query: 772 VSISSSDEGVTTINCRI 788
           + + S     T     +
Sbjct: 688 LKVESVYGKGTKFWFDL 704


>gi|147675339|ref|YP_001218573.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|262167976|ref|ZP_06035675.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|146317222|gb|ABQ21761.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|227012162|gb|ACP08372.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|262023509|gb|EEY42211.1| sensor histidine kinase [Vibrio cholerae RC27]
          Length = 1147

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E     +P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNQMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              L    +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSLLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNQMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|262369862|ref|ZP_06063189.1| sensor protein gacS [Acinetobacter johnsonii SH046]
 gi|262314901|gb|EEY95941.1| sensor protein gacS [Acinetobacter johnsonii SH046]
          Length = 937

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    A + K+ F+ ++S+ELR+PL +I GF  LL      +LN+ Q+ Y++ I  
Sbjct: 276 RQARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQ--DNLNNDQNLYLQTIRK 333

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
           SS  LL L+ND+LD + +DAG ++L+ +T  L + + +V   ++    + +I +    +D
Sbjct: 334 SSAHLLALINDVLDFSKIDAGKIELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYAD 393

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
                 V D  R  QI + ++SNA+ F+  G  +I++A  +  D       FSV+++G  
Sbjct: 394 NVPKHVVGDALRFKQILTNLISNAIKFTPDGE-IIVRARMEQDDIGQCLLHFSVQDSGIG 452

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  ++L  G +    +      E  +
Sbjct: 453 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGS 512

Query: 783 TINCR 787
           T    
Sbjct: 513 TFWFT 517


>gi|160899265|ref|YP_001564847.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160364849|gb|ABX36462.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1177

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 128/258 (49%), Gaps = 3/258 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT          +RA+ ALT+K   L  A + K+ F+ ++S+ELR+PL + +    LL
Sbjct: 442 EEQTQQLEYQREQLLRAQGALTDKAHELELASQYKSEFLANMSHELRTPLNSTLILAKLL 501

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +K G+L + Q +Y + I A+ + LL L+NDILDL+ ++AG + +    + +   L  +
Sbjct: 502 ADNKPGNLQADQVKYAQTIHAAGSDLLALINDILDLSKIEAGQVSVLVEPMTIATALQAL 561

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + +     E  + +    D  +  S   D  RL Q+   +LSNA+ F++KGS  +  + 
Sbjct: 562 MEPLRPIAREKGLELTWTVDPGVPASMQTDPMRLAQVLKNLLSNALKFTAKGSVGLQVSR 621

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
              G   F+V++ G  I E   + +F+ F        R   G GLGLSI      L GG 
Sbjct: 622 VPGGMLAFAVRDTGIGIAEQQQQFIFDAFRQADGSTHRKFGGTGLGLSISRDLAGLLGGT 681

Query: 772 VSISSSDEGVTTINCRIP 789
           +++SS+    +     +P
Sbjct: 682 LTVSSTPGQGSVFTLTVP 699


>gi|262275440|ref|ZP_06053250.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262220685|gb|EEY72000.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1306

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/543 (19%), Positives = 201/543 (37%), Gaps = 69/543 (12%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN-- 363
            +   IL N    + I ++       N   +  +    A L   P   EL          
Sbjct: 343 RYLESILRNYADGVIIVNEEGVAVTINDKTLS-FVCPPANLGNKPKLIELSTEKNEPLVA 401

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM---FENLT 420
            L +  +    K     +YK S   +      N   L +         +I++     ++T
Sbjct: 402 ILSKLFDAAMDKNEASKIYKQSPDEET-----NSLCLSLKARKQQIDDSIYVVINIRDIT 456

Query: 421 VQVDLETKY---NTLVKVQGETID-HLSEG-----------VAVFGPDGRI------KLS 459
                E K    N L  V     D +++ G           V     D ++      K S
Sbjct: 457 ESARAEAKLSKSNALYSVFNTVQDLYMTTGNSEKSFKKALVVLATFTDSKLASMLALKDS 516

Query: 460 N-------------------PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           N                   PA    +     +     +  +         +  + +   
Sbjct: 517 NQKVMFKHQTTFLDQTFDGLPAHLVPYAESSIQQRRTHYSSDHPQHGEHADSFFEHYAFI 576

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEK 558
             I    D     + G     ++ ++ + I P+  + + + + +    +  E   AL   
Sbjct: 577 PLITKGEDIGVIVIAGRSSPYTEELISW-IAPVVKSMSSMLYSDRQAQLNQEVNEALRRA 635

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   +A++ K++F+  +S+E+R+P+  IIG +++L  ++L     +Q +Y + I+ S+ 
Sbjct: 636 KEDAEQANDAKSNFLAMMSHEIRTPINGIIGMSEVLSHTELAF---EQRRYNDTITTSAN 692

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+++ND+LDL+ ++AG M + + T  +++L+  V   +A ++ ++N+     +D  L 
Sbjct: 693 ALLDIINDVLDLSKIEAGKMTVRHETFCIHELVENVTNIVAPRV-KSNVTFTTYTDPLLP 751

Query: 679 S-FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPED 733
               +D  +L QI   +  NA  F+  G    S   +    +  +    V + G  I + 
Sbjct: 752 HQITSDFSKLRQILVNLAGNAAKFTDSGYVDVSITQVSRIENRCEIALKVTDTGIGIEKA 811

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT----INCR 787
                F  F    +  +RR  G GLGL I   F  L  G +   SS    +T        
Sbjct: 812 QLDKAFENFSQIDNSSKRRYQGTGLGLPICRKFTELLNGDIKAESSIGQGSTFSARFTVD 871

Query: 788 IPS 790
           +P+
Sbjct: 872 VPA 874


>gi|37678325|ref|NP_932934.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37197064|dbj|BAC92905.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 598

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 157/381 (41%), Gaps = 29/381 (7%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L+    L ++ NTL +   +      + + V          NP    + +  +       
Sbjct: 74  LSEIQKLTSELNTLKEASNDINVRFPQMIWV---------GNPLPSVVEEYVKTADKQLV 124

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--------- 529
            +  +     +   E    +L   + +   DE  + +   E L D++   S         
Sbjct: 125 FLDKMLKAKQQIVPEVSLIELERQVFSEEMDE--AAEHVHERLMDNIFLTSKAAVYTLIL 182

Query: 530 -IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            II + +A  +     + +  + + AL        +A+  K+ F+  +S+E+R+P+  +I
Sbjct: 183 FIILIFSAVFLYLNHYIIELKKTKLALQVAVNKAEEANLAKSMFLATMSHEIRTPMNGVI 242

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T LL +    + +     +++ +  S   L+ ++N+ILD + ++ G +        L+
Sbjct: 243 GMTQLLIS---DNKDPSIQTHLDTLLESGEHLMVVINEILDFSNLEQGSLVFVQEEFELS 299

Query: 649 DLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            LL  +K S   +  E  +++   ++   +    V D+ R+ Q+   ++ NA+ F+S G 
Sbjct: 300 KLLVPIKNSFQPQASEKKLQLIFDTNSLPEDLILVGDKTRIRQVIYNLVGNAIKFTSDGQ 359

Query: 707 T-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVES 763
             V+LK   D  +    V + G  IP    K +FN F     R      G GLGLSIV+ 
Sbjct: 360 VKVVLKYESDKNELCIQVSDTGIGIPSHRLKGIFNAFEQADVRTMHDFGGTGLGLSIVKK 419

Query: 764 FINLHGGHVSISSSDEGVTTI 784
                GG ++++S     +  
Sbjct: 420 ICLSMGGDITVTSELGSGSCF 440


>gi|283850700|ref|ZP_06367987.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573943|gb|EFC21916.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 651

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 152/353 (43%), Gaps = 35/353 (9%)

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           + + +   DG I  + PA   L  +  N+L+               +      D  A + 
Sbjct: 18  DALLLLDKDGIILHATPAAAPLLGSPANQLTGLP------------FGIPVMCDGQAEVT 65

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            +         G + LL    L  S +PL    T +   +VT+       L    EA + 
Sbjct: 66  LA-------ATGRVALLRRESLHESGLPL----TRVVLRDVTEHRAVLAELAAAREAAKA 114

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +  K+ F+ ++++E+R+P+  I+G T+L   +K   L  KQ +Y+E    S+  LL ++
Sbjct: 115 GERAKSHFLANITHEIRTPMIGILGMTELTLATK---LTEKQREYLEMARHSAQSLLTVL 171

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VAD 683
           NDI+D A ++ G ++L  +   L   + E          + ++ I     G +    V D
Sbjct: 172 NDIVDYARIEVGALELARTPFDLYATVEETISVFRPLAAKKHLVIGYQFIGAVPQVLVGD 231

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKS 737
             RL QI   ++ NA+ F+  GS V+     D+G          +V++ G  IP D  ++
Sbjct: 232 ASRLRQILINLVGNAVKFTDAGSVVLTITRADDGSERKAAQLHLAVRDTGIGIPRDKIQA 291

Query: 738 VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F+ F         + +G GLGL+IV   + + GG  S+ S +   +  +  +
Sbjct: 292 IFDSFTQADVSAARRYQGAGLGLAIVRHLVEMQGGLYSVESEEGQGSIFSFTL 344


>gi|260438167|ref|ZP_05791983.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876]
 gi|292809355|gb|EFF68560.1| transcriptional regulator [Butyrivibrio crossotus DSM 2876]
          Length = 986

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 121/240 (50%), Gaps = 7/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + EK     KA+++K++F+  +S+E+R+P+  I+G  D++  S     +    +Y   I 
Sbjct: 391 IREKAVYALKANQLKSNFLASMSHEIRTPINAIMGMNDMILMS---DPDKAIKEYAGNIR 447

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++   LL+++NDILD + +++G ++L  +T     +LN+V   I  K     +   V +D
Sbjct: 448 SAGDTLLSIINDILDFSRIESGKIELVENTFSTISMLNDVIMMIKGKAENKGLEFIVKAD 507

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KAARDNGDFIFSVKNNGSSI 730
            ++ S F AD  ++ QI + +L NA+ ++ KGS  ++       D      +V + G  I
Sbjct: 508 KEMPSSFKADEVKIRQILTNVLGNAVKYTEKGSIELIMKGSYVEDKYVLNVTVTDTGIGI 567

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            E+    +FN+F          G GLGLSI + ++ + GG +S  S     +     IP 
Sbjct: 568 KEEFKDKIFNKFERADTMSSVEGTGLGLSITKKYLGIMGGTISFDSKYGEGSEFYISIPL 627


>gi|138894461|ref|YP_001124914.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265974|gb|ABO66169.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 354

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 122/283 (43%), Gaps = 6/283 (2%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK  +     L D++   +         +               + +    L+  ++++ 
Sbjct: 72  RKRERVFWHHLIDAINRIAKGDFRVNLQVDWGGRHHPFAELVTRINDMAANLQAMEDMRQ 131

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+E+ SPLT+I GF   LK   L     ++  Y++ I      L  L  ++L L
Sbjct: 132 EFISNVSHEIGSPLTSIRGFARALKNENLSQ--EQRMHYLDIIETECVRLSKLSENLLRL 189

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A +D+    L+ ++  L+  L  +      +  E ++ +  + +    S  AD   L Q+
Sbjct: 190 AMLDSERYPLHPTSYRLDTQLQTLILHCEPQWAEKDVDMCAVMEK--VSITADEDLLSQV 247

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           +  ++ NA+ F+ KG T+ ++  R     I ++ + G  IP+     +F RF        
Sbjct: 248 WLNLIHNAIKFTPKGGTITVQVQRRGEQAIVTISDTGPGIPKHDQPRIFERFYKVDKSRH 307

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           R   G GLGL+I +  +++H G +S+ S      T    +P +
Sbjct: 308 RAAGGSGLGLAIAKQIVDMHHGTISVQSEPGEGATFTVELPIR 350


>gi|261822453|ref|YP_003260559.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium wasabiae WPP163]
 gi|261606466|gb|ACX88952.1| integral membrane sensor hybrid histidine kinase [Pectobacterium
           wasabiae WPP163]
          Length = 951

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 161/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     N L+    +R     
Sbjct: 350 QLEENEQFNRKIVASAPVGICILRISDGTNILSN----ELAHNYLNLLTHEDRLRITRII 405

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +          F  ++TS +   +         +++V             +   ++V+
Sbjct: 406 CEQQSK-------FVDVMTSRNHHLQISFVHSRYRNENV------------AICVLLDVS 446

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL    
Sbjct: 447 ARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPQDA 503

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +    + +  
Sbjct: 504 NRLVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKR 563

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++ +    +G   F V++
Sbjct: 564 LMLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIVFEVGCRDGYLEFVVRD 622

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I S     + 
Sbjct: 623 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 682

Query: 784 INCRIPS 790
              RIP 
Sbjct: 683 FGVRIPL 689


>gi|289164577|ref|YP_003454715.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150]
 gi|288857750|emb|CBJ11594.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150]
          Length = 910

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/315 (22%), Positives = 134/315 (42%), Gaps = 14/315 (4%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            +   R   +    +    I T+   E   ++     L    LE +I  L +   + T  
Sbjct: 210 ISRLRRSMKQILRNEFETEIKTTSSGELGIIEQGCSHLQKKHLE-TIRDLNHHIEVATAD 268

Query: 544 NVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                   E     L+ + + + +    K+ F+ ++S+E+R+P+  +IGFT++L  SKL 
Sbjct: 269 LQQSLELLEEKNIELSLEKKKIEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLD 328

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L   Q  YV+ I +S+  LL ++NDILD + +DAG + L+   + +   ++EV    A 
Sbjct: 329 PL---QLDYVKTIKSSAQDLLGIINDILDFSKIDAGKLHLDCIPLNIRHCIDEVLALAAP 385

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD- 718
             H+  I +  I++  +   V  D  R+ Q  S +++NA+ F+  G  +I        + 
Sbjct: 386 NAHKKGIDLIPITELNVPKIVLGDPFRVKQFISNLVTNAVKFTDHGYVLIRTNVEQETEK 445

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
                 ++ + G  I  +    +F  F         +  G GLGL I +       G ++
Sbjct: 446 DYTLCITITDTGLGISPEDQSKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMKGRIT 505

Query: 774 ISSSDEGVTTINCRI 788
            +S     +     I
Sbjct: 506 FASELNKGSVFTAYI 520


>gi|182412958|ref|YP_001818024.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177840172|gb|ACB74424.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1896

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 127/271 (46%), Gaps = 16/271 (5%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             Q +      T+  +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L 
Sbjct: 1196 EQNVEVERKNTEVEQARRALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLA 1255

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +  G+L +KQ  +   I +S T LLNL+ DILDL+ +++G + +    I  + L + ++
Sbjct: 1256 ENATGNLTTKQIDFARNIHSSGTDLLNLITDILDLSKIESGTVTVEAEEISFSSLRDAIE 1315

Query: 656  QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VIL--- 710
            ++        N+ ++V     L  +   D +RL QI   +LSNA  F+++G   V +   
Sbjct: 1316 RNFRHIAEAKNVPLEVDFASTLPRAITTDPKRLQQILKNLLSNAFKFTAQGKVAVRVFPA 1375

Query: 711  ---------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
                       +R      F++++ G  I  +  K +F  F         +  G GLGLS
Sbjct: 1376 LSGWVQGHPVLSRATHVIAFAIQDTGIGIAPEKQKLIFEAFQQADAGTSRKYGGTGLGLS 1435

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            I      L GG + ++S+    +T    +P 
Sbjct: 1436 ISRELATLLGGEIRLNSTPREGSTFTLYLPL 1466


>gi|45657908|ref|YP_001994.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45601149|gb|AAS70631.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 974

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 145/314 (46%), Gaps = 5/314 (1%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R I     +   +S+        +   ++E +     L    +  L+ S   L   QT +
Sbjct: 463 RKIQELLEQTRIQSEELQTQQEELRQMNEELEEQTQVLRQQQEE-LKVSNEELEE-QTHI 520

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +   +   A+  + +K + L  + + K+ F+ ++S+ELR+PL +++  +  L  +K  
Sbjct: 521 LEMKNKEVELAKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKRK 580

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+  Q +    I  S   LL L+ND+LDL+ +++G M +N   +VL     E+  +   
Sbjct: 581 NLSEDQVESANIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTFKL 640

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           +  E  + + +I D  L   +  D  RL QI   ++SNA+ F+ +G   +    ++    
Sbjct: 641 QATEKKLDLDLIFDDDLPEVIRTDSHRLNQILKNLISNALKFTERGKVQVEIKKQNKDKI 700

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           +FSV ++G  IPE+   ++F  F        R   G GLGLSI      L GG + + S 
Sbjct: 701 LFSVIDSGIGIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFLKSK 760

Query: 778 DEGVTTINCRIPSK 791
               +T +  +P +
Sbjct: 761 VNQGSTFSLSLPIE 774


>gi|323499018|ref|ZP_08103998.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315853|gb|EGA68884.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 570

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/398 (22%), Positives = 167/398 (41%), Gaps = 35/398 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-----RIKLSNPAFRSLWKTEENR 473
           +T+  D +  +  L  V    ID  S+ V +           +  SNP F+ ++  + ++
Sbjct: 40  ITIASDKQQIFKELKSVLALYID-FSDFVVLTKNSDQTQYQTLLSSNPNFQGIYWQDSDK 98

Query: 474 LSPGTHIRNIAATCSRYYNESDG------WDLFAAIITSFDDERKSLQGTLELLSDS--- 524
                    I        +E +         +F+A+IT     + ++  ++ LL      
Sbjct: 99  YMRALSGECIIFFEPNKLDEFEHLSSLGNGPVFSALITGA---KATITDSIILLIGRKAG 155

Query: 525 --VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA--------LRKADEIKNSFVQ 574
              L+Y          +   +   + +   + L +              KA+E K+ F+ 
Sbjct: 156 QFTLDYRDTLSRFRPLVERALTDIERIEQLQQLVDIKTQQLKLAQVKAEKANEAKSRFLA 215

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+ELR+PL+ ++G+ D+L           Q + +E + +S+ +LL L+NDIL+L+ ++
Sbjct: 216 MMSHELRTPLSAVLGYIDVLLADLKQ---ENQLEILEKMESSAELLLVLINDILELSRIE 272

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSK 693
           +G   + Y  + LN  L  V +          ++  V  +  +  S   D  R++QI   
Sbjct: 273 SGEFPIKYQWVRLNTELKFVLEHFYALADAKGLKFSVNIEFDESLSLWIDPARVMQIVFN 332

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR 751
           ++ NA+ F+  G  V L A   N   + +VK+ G  I +D    VF+ F           
Sbjct: 333 LVGNALKFTHAGE-VCLTANVINQHLVITVKDTGIGIDKDRLDIVFSEFKQADDSITRSY 391

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL+I +  + L  G++S+ S     +T    +P
Sbjct: 392 GGTGLGLTISKHLVGLMSGNISVKSKLGQGSTFRIELP 429


>gi|212639804|ref|YP_002316324.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561284|gb|ACJ34339.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 469

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 5/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +  +A  +   AL K DE K  F+ +VS+ELR+PL+ + G+++ L    +    ++Q
Sbjct: 223 EIGQLAKAFNQMAHALAKEDERKKEFLANVSHELRTPLSYVKGYSEALLDGVIKE-EAQQ 281

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +YV  I   ++ +  LV D+LDLA ++ G   L  +   +  L+ E  +     + E N
Sbjct: 282 KKYVRLIHREASRMQRLVRDLLDLAQLE-GTYPLVRTPFSIAQLVEETIEKYEPMLQEKN 340

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           IR+ +           D  R+ Q+   +L NA+ ++    T+ L+A          + ++
Sbjct: 341 IRLLLDL-DHDLIVDGDPDRIEQVLQNVLDNALRYTPSFGTISLRAVNKQPMCELIIADS 399

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  + ++  + +  RF        R   G GLG++IV+  I LHGG +   S     TT+
Sbjct: 400 GCGMSKEDIERLGERFFRADRSRSREHGGTGLGIAIVKQIIKLHGGSIRFESEQGKGTTV 459

Query: 785 NCRIPS 790
              +P 
Sbjct: 460 YMELPL 465


>gi|168207377|ref|ZP_02633382.1| sensor histidine kinase/response regulator [Clostridium perfringens E
            str. JGS1987]
 gi|170661247|gb|EDT13930.1| sensor histidine kinase/response regulator [Clostridium perfringens E
            str. JGS1987]
          Length = 1093

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLN 603
              +  +  +   +  + + K  + KN +  ++S+ELR+PL  I+    L+K  +K   L 
Sbjct: 837  YIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKEDCLG 896

Query: 604  SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + Y   +  ++  LL ++NDI+D + +++G  KLN     +  L+ +   S+   +
Sbjct: 897  KYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSLKAYI 956

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
             ENN+ I +  + +      D+  + +    +LSNA+ ++    T+ +     +N     
Sbjct: 957  EENNLDIIIDPEIEELDIECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENETVEI 1016

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            ++K+ G  I ++  K +F+RFV      + Q R  G+GL++V+S I LH G + + S   
Sbjct: 1017 AIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVESELN 1076

Query: 780  GVTTINCRIPSKE 792
              +T    +P ++
Sbjct: 1077 KGSTFIITLPIRQ 1089


>gi|332991838|gb|AEF01893.1| aerobic respiration control sensor protein ArcB [Alteromonas sp.
           SN2]
          Length = 785

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/469 (20%), Positives = 187/469 (39%), Gaps = 27/469 (5%)

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           S V L  +   ++       EL++ L ++    +++  +  +     V+ + E   +   
Sbjct: 60  SAVILTMLSAPWVLY--FFSELIKQLENSRTNLKEVVSQLERLREEDVFLNRELQTNIRQ 117

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQV----DLETKYNTLVKVQGETIDHLSEGVAV 449
           L +     +      +     +F++L  ++    + E +   L  +    ID   + +  
Sbjct: 118 LNH----EIEQRKLAQEEREALFKDLEREIQDKSEQEAQARRLSTLLRSIIDASPDLIYY 173

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              +GR    N     +    E  L   T         +R    SD       ++ +   
Sbjct: 174 RNEEGRFAGCNRIAELMTGKTEQELLGLTPTDVYEEDLARQIVASDH-----EVLETNAS 228

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
             + L            E   +P  + +     +        ER   +   A  KA   K
Sbjct: 229 ITEELWLRFADGRRRYFEMKRVPFFDKEGNRLGLLSFGRDMTER--KQAENAAAKASTDK 286

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
             F+  +S+ELR+PL  I+G + +L+ ++   LN +Q  +V  I AS+  L N+ NDI+D
Sbjct: 287 TRFIATISHELRTPLNGIVGLSRMLRDTE---LNEEQFSWVSTIYASAITLGNIFNDIID 343

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLL 688
           L  +D   ++L+  T+ L D   E+   I     +  + +K      L   V  D  RL 
Sbjct: 344 LDKLDRDKVELSLKTVSLRDFTEELSSIIRLLAGDKQLELKTTIKEPLPRLVEVDGTRLR 403

Query: 689 QIFSKILSNAMDFSSKGST-VILKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVS 744
           QI   IL NA+ F+ KG   + ++A +   D     F +++ G  IPE+  + +F  +  
Sbjct: 404 QILWNILFNAVKFTQKGHVSLSIEATKPENDVAFVTFVIEDTGVGIPEEEIEKIFAMYYQ 463

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             H   +   G G+GL+I +  ++L  G++ ++S     T     +P +
Sbjct: 464 VDHPDHQSATGTGIGLAICKQMVDLMKGNIKVTSVVGKGTRFEIELPVE 512



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 59/150 (39%), Gaps = 15/150 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R      +  E+ + + +  +     ++ + + D+   L+++R++ G     N   +  T
Sbjct: 132 REALFKDLEREIQDKSEQEAQARRLSTLLRSIIDASPDLIYYRNEEGRFAGCNRIAELMT 191

Query: 227 ETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIV 280
              G   Q+ +G     +++E++ +++++S         +++         G  + +++ 
Sbjct: 192 ---GKTEQELLGLTPTDVYEEDLARQIVASDHEVLETNASITEELWLRFADGRRRYFEMK 248

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQ 304
           RV       N  G      D+++     + 
Sbjct: 249 RVPFFDKEGNRLGLLSFGRDMTERKQAENA 278


>gi|298377731|ref|ZP_06987682.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298265434|gb|EFI07096.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 622

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/414 (22%), Positives = 180/414 (43%), Gaps = 33/414 (7%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL------------VKVQGETIDHLSEGV 447
             + +        I    N++  V+ E     L            + +Q   I   S   
Sbjct: 213 FKLRLVPVHDRYVIIYIRNVSELVEQEKANEALSSKLSESRMMMELALQNSKITTYSFNF 272

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           + F    ++   N  F   + T  + L     I           +  D + LF  I T+ 
Sbjct: 273 SRFKSCDKV-HCNRCF-QFYGTTNSLLKRNQFICQALPQLRHPDDSGDFFYLFNTIRTNK 330

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQ--------TMLTFVNVTDSVRAERALTEKN 559
            DE K +   L+   ++   Y +I   + +         +   ++  + +  E  L    
Sbjct: 331 LDEYK-IDFRLKNDDNTYRIYEVIGKTHEKDENGFPNLIVGCMIDDQERLEFEEDLILAK 389

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L   +  Y+  I  ++ +
Sbjct: 390 EKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSEL---RQNYISLIKMNNDL 446

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E  + + + +   +  
Sbjct: 447 LLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPE-GVEMTLDACPDII- 504

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKS 737
           F  DR RL QI   +L+NA+  + KG  +        +     F V + G  IP+D   +
Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKG-RIWFGYTLEAEEKMIKFYVSDTGCGIPKDELDN 563

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RFV  +   Q  GVGLGL+I +  +   GG++S+ S +   +T    +P K
Sbjct: 564 IFARFVQLSDFEQ--GVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLPMK 615


>gi|296390015|ref|ZP_06879490.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 651

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L    E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++      +Q
Sbjct: 244 EQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQ---TREQ 300

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    + S+  LL ++NDILD + ++ G ++L      L +L+            +  
Sbjct: 301 AEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRG 360

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++     L       D  R+ QI   +L NA+ F+ +G+  + L+    + D +   
Sbjct: 361 LALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLT 420

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  I  +  + +F+ F         +  G GLGL+I  +     GG +   S +
Sbjct: 421 CAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKE 480

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 481 GSGSTFTLEIPL 492


>gi|317051227|ref|YP_004112343.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946311|gb|ADU65787.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1000

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 126/252 (50%), Gaps = 12/252 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E+ +    +    A+ +K+ F+ ++S+E+R+P+  ++G   L   ++   L+
Sbjct: 460 DVTERKLLEQEMLAARQQAEAANAVKSEFLANMSHEIRTPMNAVLGLIYLCLQTQ---LS 516

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q   +    A++  LL+++NDILD++ ++AG +++      L ++L++V   +  ++ 
Sbjct: 517 AEQRDMLSRSYAAAESLLDILNDILDISKIEAGKLEVEQVEFPLAEVLDKVFNLLKFRVE 576

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E  ++  V  D ++  + + D  RL Q+   I  NA+ F+ +GS V L+   + G     
Sbjct: 577 EKGLKHSVTVDEEVPSTVIGDPMRLGQVLLNIAGNAVKFTEQGS-VSLELFCEAGVDGDL 635

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
              F  ++ G  +  +  +++F  F         +  G GLGL+I    ++L GG + + 
Sbjct: 636 VLRFVFRDTGIGMSHEQMENLFESFNQTDTTITRKYGGTGLGLAISRRLVHLMGGDIQVE 695

Query: 776 SSDEGVTTINCR 787
           S     +T    
Sbjct: 696 SEPGKGSTFTFS 707


>gi|162451780|ref|YP_001614147.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161162362|emb|CAN93667.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 1171

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 3/247 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +  RA   L   NE L + DE+K  F  +VS+ELR+PLT ++   D L TS  G L  +
Sbjct: 200 QEIQRANEQLRVANEQLSRLDELKTRFFSNVSHELRTPLTLMLCPIDELLTSAPGGLTDR 259

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q + VE    ++  LL LVN +LD A ++A  M+++Y  + L+ L  EV  +    +   
Sbjct: 260 QRELVELARRNARRLLKLVNTLLDFARIEAARMQVSYEALDLSALTAEVVSAFRAAVERA 319

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +R+ V           DR+   +I   ++SNA  F+ +G  + +         +  V++
Sbjct: 320 GLRLVVDCPPLPERVYVDREMWEKIVLNLVSNAFKFTLEGE-IGIALRWAGDHVLLEVRD 378

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G+ IP D    +F+RF  +  AH     G G+GL++V   +  H G V  +S     +T
Sbjct: 379 TGTGIPADELPRIFDRFHRIQGAHGRSHEGSGIGLALVRELVRFHMGEVHATSEVGRGST 438

Query: 784 INCRIPS 790
              RIP+
Sbjct: 439 FTVRIPA 445



 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 159/439 (36%), Gaps = 17/439 (3%)

Query: 355 LLEFLRSANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           LL+ LR+  +     + + + +    S    +E   D + +       ++     R    
Sbjct: 570 LLKALRAEPRTRLVPVVFISARSGEASRVHGAEAGADDYLVKPFSVRELLARVGGRIEIA 629

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +   L   V+   +     +      D     + + GP G  +  N  +        + 
Sbjct: 630 RLRRQLAEDVE---RLRESEQRFRSLADCAPMMIWMSGPSGGCEYVNTTWLRFTGRSLDE 686

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                 +  +               +        + +     G    +            
Sbjct: 687 ELGDGWLDAVHPDDRPLVASVCAESIETHEPFMLECQMLRRDGESRWVVTQGAPRFGAAG 746

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                + + +++T+  R E AL +        D  K+ F+  + +ELR+P+  I    +L
Sbjct: 747 AFLGFVGSSLDITERKRVEDALADA-------DRRKDEFLAMLGHELRNPMAPICVAVEL 799

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+    G       Q++E I+  +  L+ LV+D+LD++ +  G ++L    I +   +  
Sbjct: 800 LRRRSHGGPPD---QHIEVIARQTRTLMRLVDDLLDVSRITRGKIELRKERIDVKAAVAR 856

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +S   ++     +I+++        + D  RL QI   +L+NA  ++  G  + +   
Sbjct: 857 AVESTREQIEARRHQIRLVLPAAAVQVLGDDVRLEQILVNLLTNACKYTDPGGHIGVTVE 916

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
           +  G     V+++G  I  ++   VF  F            G+G+GL+IV   + LHGG 
Sbjct: 917 QRGGQVELRVRDDGIGISREVLPHVFELFHQADRSLDRAPGGLGIGLTIVRDLVALHGGS 976

Query: 772 VSISSS-DEGVTTINCRIP 789
           +  +S      +    R+P
Sbjct: 977 IEATSPGPGQGSEFIVRLP 995



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 72/202 (35%), Gaps = 29/202 (14%)

Query: 131 TEKLRKEGQSFDLVA---ETQNDCAIKIEGRVSGSCAFL-------RILSLDGIYSELAE 180
            + LR E ++  +       ++  A ++ G  +G+  +L        +L+  G   E+A 
Sbjct: 571 LKALRAEPRTRLVPVVFISARSGEASRVHGAEAGADDYLVKPFSVRELLARVGGRIEIAR 630

Query: 181 TTLKCK----KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGI 231
              +      +L      F+ L D    ++W    +G   + N ++ +       E  G 
Sbjct: 631 LRRQLAEDVERLRESEQRFRSLADCAPMMIWMSGPSGGCEYVNTTWLRFTGRSLDEELGD 690

Query: 232 VFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
            +  A+    +     +    I +       C+ +     G ++   + +    FG AG 
Sbjct: 691 GWLDAVHPDDRPLVASVCAESIETHEPFMLECQMLRR--DGESRWV-VTQGAPRFGAAGA 747

Query: 292 -------AIDVSKEITVNDQLT 306
                  ++D+++   V D L 
Sbjct: 748 FLGFVGSSLDITERKRVEDALA 769


>gi|298500269|ref|ZP_07010074.1| sensor histidine kinase FexB [Vibrio cholerae MAK 757]
 gi|297540962|gb|EFH77016.1| sensor histidine kinase FexB [Vibrio cholerae MAK 757]
          Length = 785

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 151/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L     + L   T  
Sbjct: 144 EKNQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRGSELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  N     
Sbjct: 202 DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYNKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLIGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARD--N 716
              +  +R  +     L S V  D  RL Q+   +LSNAM F+ +G  V  + A  D  +
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTVSAECDAQH 431

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 AEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VNSEEGFGSTFTVTI 506



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 54/146 (36%), Gaps = 13/146 (8%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKNQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRGSE 194

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL---- 283
                     ++++EI + ++ +     N    ++         G    +++ +V     
Sbjct: 195 LVGLTPW--DVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNK 252

Query: 284 --NSFGEAGIAIDVSKEITVNDQLTH 307
                G  G   D+++     + L  
Sbjct: 253 DGRHLGLIGFGRDITERKRHEESLEK 278


>gi|15596808|ref|NP_250302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9947577|gb|AAG05000.1|AE004589_3 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 651

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L    E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++      +Q
Sbjct: 244 EQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQ---TREQ 300

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    + S+  LL ++NDILD + ++ G ++L      L +L+            +  
Sbjct: 301 AEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRG 360

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++     L       D  R+ QI   +L NA+ F+ +G+  + L+    + D +   
Sbjct: 361 LALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLT 420

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  I  +  + +F+ F         +  G GLGL+I  +     GG +   S +
Sbjct: 421 CAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKE 480

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 481 GSGSTFTLEIPL 492


>gi|254559131|ref|YP_003066226.1| PAS sensor signal transduction histidine kinase [Methylobacterium
           extorquens DM4]
 gi|254266409|emb|CAX22173.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
          Length = 786

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 176/460 (38%), Gaps = 59/460 (12%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTS-------NPRGGTIWMFENLTVQVDLETKY 429
              +   ++  H+      +G+ + +   +       +     + +  ++T Q  L    
Sbjct: 300 RHLAASHATVDHEFRIRDASGEWIWLRTRAEIVEDAVDGSRHLVGIAMDVTEQRRLAEFT 359

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            T      + ++ +SE   ++    R+ L N  FR L         PG           R
Sbjct: 360 ATADMRLRDAVEAVSEAFVLWDASNRLVLCNSKFRDLHALASEDAVPG-----------R 408

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            Y+E  G      +        +    T  +EL     L+ S     +   +    ++T 
Sbjct: 409 RYDEIMGRGALPPVRRGIPGSERGPSRTFEVELTDGRWLQVSERRTKDGGYVSVGTDITS 468

Query: 548 SVRAERALTEKNEALRKA-----------------------------------DEIKNSF 572
             R +  L      L +                                    ++ K+ F
Sbjct: 469 LKRHQEQLVTSERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSEF 528

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLA 631
           + ++S+ELR+PL  I+GF +L+++   GSL + + + Y   I  S T LL++++DIL ++
Sbjct: 529 LANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHMS 588

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++A  +KL    I L   LN     ++ +    ++ I +   G L   +AD + L QI 
Sbjct: 589 RIEAKRVKLVRRDIDLGTALNSALTLVSKEAASKSVSIDLELAGTL-HVLADERALQQIL 647

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RG 749
             I+ NA+ F+ +   V L+    NG     + + G  IP+     +   F         
Sbjct: 648 LNIIQNAVKFTPEQGRVALRGRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNLTR 707

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +G GLGL+I  S   LHGG + I S +   T +  R+P
Sbjct: 708 SYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLP 747


>gi|91789987|ref|YP_550939.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
 gi|91699212|gb|ABE46041.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
          Length = 919

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 117/250 (46%), Gaps = 4/250 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +   A   L   N+ L++ D +K+ F+  V++ELR+PLT+I   +++L  +   SL  +
Sbjct: 663 QELEAATAKLRAANDRLKELDRMKDDFMSTVTHELRTPLTSIRALSEILLETPQASLAER 722

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  ++  I   +  L  L+N +LD+A +++G  + + S + L +++ E   +     ++ 
Sbjct: 723 QK-FLGIIVKEAERLTRLINQVLDMAKIESGNAEWHTSELDLREVIEESVAATYATFNDR 781

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGDFIFSVK 724
           ++ +            ADR RL+Q+   +LSNA+ F       V +   ++ G     V+
Sbjct: 782 HVTLTQDLASHTPRIRADRDRLIQVMLNLLSNAVKFCHPTRGQVHVSLRQEPGGLRVDVR 841

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NGS I     K +F RF         +  G GLGL I    I   GG + + S      
Sbjct: 842 DNGSGISAANQKIIFERFRQVGDTMTNKPQGTGLGLPISRHIIERFGGRLWVQSEPGNGA 901

Query: 783 TINCRIPSKE 792
           T +  +P  +
Sbjct: 902 TFSFTLPFSQ 911


>gi|50086083|ref|YP_047593.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
 gi|49532059|emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
          Length = 932

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    A++ K+ F+ ++S+ELR+PL +I GF  L+   +  +L+++Q  Y++ I  
Sbjct: 275 RQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQQ--NLSNEQRLYMQTIRK 332

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+ND+LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 333 SSAHLLALINDVLDFSKIDAGKLELETAAFNLEEAIFDVMDMLSPLAAQKHIDMAFYYGD 392

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +   V  D  R+ QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 393 NIPEIVIGDALRVKQILTNLISNAIKFTPDGE-IIVRVRMEHDDIDQCLLHFSVQDSGIG 451

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-----EGVT 782
           +     K +F  F         Q  G GLGL+I +  + L  GH+    +      E  +
Sbjct: 452 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVQLMHGHIGFEDNQERAPTEKGS 511

Query: 783 TINCR 787
           T    
Sbjct: 512 TFWFT 516


>gi|160893712|ref|ZP_02074496.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50]
 gi|156864697|gb|EDO58128.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50]
          Length = 583

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 10/260 (3%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  +++TD    E  L++       A + +  F+ ++S+E+R+P+  I+G   L  T   
Sbjct: 175 MVVIDITDQKDTENKLSKAIVDANAAYKTQAEFLANMSHEIRTPINGILGMLQL--TLMA 232

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L +     +      +  LL L+NDILD++ ++AG  K+   T  +   + E   +  
Sbjct: 233 DDLQADYRDNLVTAKNCADTLLRLINDILDISKLEAGKYKIKEETFDIKQAIEETVAAQV 292

Query: 660 TKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG 717
              +   +++       +   V  D QR+ Q+ + +LSNA+ F+S+GS  V + +    G
Sbjct: 293 PLANNKGLQLDCSFGNNIPKLVKGDGQRIQQVLNCLLSNAIKFTSEGSVRVKIASMDMEG 352

Query: 718 D----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           +       +V + G  I E     +F RF        RR  G GLGL I +  + L GG+
Sbjct: 353 ENKVKIRMAVADTGIGISEANMSKLFIRFSQVDSSDTRRYGGSGLGLVITKQIVELMGGN 412

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S ++  +T    +P K
Sbjct: 413 IQVQSKEDIGSTFIVEVPMK 432


>gi|303326355|ref|ZP_07356798.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302864271|gb|EFL87202.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 667

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 153/403 (37%), Gaps = 16/403 (3%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLS 459
            +    +P        ++++    +       +            GV  +   +G ++L+
Sbjct: 115 RISAADDPLVRITGYHQDVSEIQAMHQSLRESLARLSLACRLGRLGVFELRHGEGELELT 174

Query: 460 -NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N  F       E  L     +  + A       E+       A       E   ++   
Sbjct: 175 GNDIFFGQLGLPEG-LGDEERVDAVEARLVPEDREAWRALRHPADWVVGRHEHTEVRVLH 233

Query: 519 ELLSDSVLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             L    L+ +   +    N +      +VT+    ER L E       A+  K+ F+ +
Sbjct: 234 PRLGQRWLKLAYEVMGSGENRRIAGYTDDVTERRLHERMLREAKNEAEAANAAKSIFLAN 293

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  I+G   L   +    L  +Q  Y+E I  +   LL+++ND+LD + ++A
Sbjct: 294 MSHEIRTPMNGIMGMAYLALNT---DLTPQQRDYIEKIHGTCVSLLDIINDLLDFSKIEA 350

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKI 694
             M+L          +  V   +  K     + ++ + D  + + +  D  RL QI   +
Sbjct: 351 NHMELENLPFQPAHEIEAVLTLLQPKAQAKKLGLETVIDPNIPTVLSGDALRLRQILLNL 410

Query: 695 LSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            SNA+ FS  G+  + L+ A    D      SV + G  +  +    +F  F        
Sbjct: 411 GSNAVKFSEHGTVRIDLELAHRTTDMVCLRCSVSDEGIGMSPEEQARIFKPFSQADTSIT 470

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RR  G GLGL++      L GG +S+ S +   +     +P +
Sbjct: 471 RRFGGTGLGLALCRRLTALMGGGISVESEEGKGSVFRVELPFR 513


>gi|171912848|ref|ZP_02928318.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 693

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 140/385 (36%), Gaps = 16/385 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ +   E             ++H   G   +     I   +     +     +      
Sbjct: 137 VSDRKASEAALQESSIRLALALEHSQLGDWSWDAANNIVAFSRRATEILGVAPDGRHSRE 196

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL------QGTLELLSDSVLEYSIIP 532
            +R       R   +    D      T++D E + +      +  +      V +     
Sbjct: 197 SLRTDIHPDDREPTKL-IVDAAIRTQTNYDVEYRVIRPNDGTEIWVHAKGRGVYDSRGNI 255

Query: 533 LPNAQTMLTFVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +    T+    +     R    L     E      +A+ IK+ F+  +S+ELR+PL  I+
Sbjct: 256 ISVVGTIGDATSRKHRDREREVLLVKEREARAEADRANRIKDEFLATLSHELRNPLNAIL 315

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+  +L+T    S   + +  ++ I  ++ +   L+ D+LD++ + +G + L+     L 
Sbjct: 316 GWASILRTE--SSDPDELAAGLDVIERNTQLQAKLIADLLDMSRILSGKVHLDLKPTNLL 373

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            L  E  ++I     E  I +    D        D  RL QI   +L+N + F+  G ++
Sbjct: 374 SLAREGVETIRIMAEEKRITVTTPGDAPPVMVSGDSARLQQIIWNLLTNGVKFTPPGGSL 433

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            L            V + G+ I       VF+RF        R   G+GLGLSIV+    
Sbjct: 434 DLSIICGQDRAELVVTDTGTGIDPQFLPHVFDRFRQADASSTRKYGGLGLGLSIVKHLTE 493

Query: 767 LHGGHVSISSSD-EGVTTINCRIPS 790
           +H G V + S       T    +P 
Sbjct: 494 MHHGTVQVFSPGVGKGATFKVTLPL 518


>gi|172056400|ref|YP_001812860.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171988921|gb|ACB59843.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 845

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 165/382 (43%), Gaps = 22/382 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           + +T+ +     Y+ + + + +T   +D + E +            N     L    ++ 
Sbjct: 472 QQMTLSLLRTRSYDEMKQEKQKTEQVLDSIREAIIYLEDGNDELYVNRPLFELIPELQSE 531

Query: 474 LSPGTHIRN---IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            +    + +   +        ++ + ++ +  +I S +     +Q  +   S  +  Y+ 
Sbjct: 532 FTRDRTLSSASYVIEVMRNIVDDVERFNDYLDLIRSGEVSPDKVQFDVRGNSAHLEVYAE 591

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                       + + D  R   A           D +K   V  VS+ELR+PL++I GF
Sbjct: 592 RIDIEGGWKGVILVIRDITRETEA-----------DRLKTELVSTVSHELRTPLSSIYGF 640

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+L+   ++ ++  KQ +Y+  I   +  L NLV D LD+  + +G  +   + + L  +
Sbjct: 641 TELMLNREIDAI--KQQKYLSTIHNETERLSNLVTDFLDVQRMQSGGQRYQMAHLDLYSI 698

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +++V          ++I++ ++S  +  + + D  R+ Q+ + +++NA+ +S  G  V +
Sbjct: 699 VDQVIGVYKASNGLHDIQLHLLS-VERPAIIGDETRIKQLLNNLVNNAIKYSPDGGQVDI 757

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
             + D  +    + ++G  IP+     +F++F    +   RR  G GLGLSI +  +  H
Sbjct: 758 TVSTDQENATIQITDHGIGIPQYAFAHLFDKFYRVDNSDTRRIGGTGLGLSICKEIVKEH 817

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
            G + + S+    +T    +P 
Sbjct: 818 DGVIHVESTVGKGSTFTVALPL 839


>gi|239994514|ref|ZP_04715038.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii ATCC 27126]
          Length = 784

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/388 (23%), Positives = 158/388 (40%), Gaps = 21/388 (5%)

Query: 415 MFENLTVQV----DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           +F++L  ++    + E +   L  +    ID   + +     +GR    N     +    
Sbjct: 135 LFKDLEKEIQDKSEQEAQARRLSTLLRSIIDASPDLIYYRNEEGRFAGCNRIAELMTGKT 194

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E  L   T         +R    SD       ++ +     + L            E   
Sbjct: 195 EQELLGLTPKDVYEEELARQIVASDH-----EVLETNASITEELWLRFADGRRRYFEMKR 249

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +P  +       +        ER   +   A  KA   K  F+  +S+ELR+PL  I+G 
Sbjct: 250 VPFFDKDGNRLGLLSFGRDMTER--KQAENAAAKASTDKTRFIATISHELRTPLNGIVGL 307

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + +L+ ++   L+ +Q  +V  I AS+  L N+ NDI+DL  +D   ++L+  TI L D 
Sbjct: 308 SRMLRDTE---LSEEQFNWVSTIYASAITLGNIFNDIIDLDKLDRDKLELSLKTISLKDF 364

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-V 708
             E+   I     +  + +K   +  L   V  D  RL QI   IL NA+ F+ KG   +
Sbjct: 365 TEELSSIIRLLAADKQLELKTTINEPLPRLVEIDGTRLRQILWNILFNAVKFTQKGHVSL 424

Query: 709 ILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
            + + + +GD     F +++ G  IPE     +F  +    H   +   G G+GL+I + 
Sbjct: 425 TVSSTKPDGDKAYVTFVIEDTGVGIPESEIDKIFAMYYQVDHPDHQSATGTGIGLAICKQ 484

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            ++L  G + +SS     T     +P +
Sbjct: 485 MVDLMKGEIHVSSKVGKGTRFEIVLPVQ 512



 Score = 45.3 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 60/150 (40%), Gaps = 15/150 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R      +  E+ + + +  +     ++ + + D+   L+++R++ G     N   +  T
Sbjct: 132 REALFKDLEKEIQDKSEQEAQARRLSTLLRSIIDASPDLIYYRNEEGRFAGCNRIAELMT 191

Query: 227 ETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIV 280
              G   Q+ +G   + +++EE+ +++++S         +++         G  + +++ 
Sbjct: 192 ---GKTEQELLGLTPKDVYEEELARQIVASDHEVLETNASITEELWLRFADGRRRYFEMK 248

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQ 304
           RV       N  G      D+++     + 
Sbjct: 249 RVPFFDKDGNRLGLLSFGRDMTERKQAENA 278


>gi|172037290|ref|YP_001803791.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698744|gb|ACB51725.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 848

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 143/303 (47%), Gaps = 26/303 (8%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA--------ERALTEKNEALR 563
           K+LQ  +  ++++  +  +    N +         +  +A        E+ + E+ + L 
Sbjct: 317 KNLQVAVHQINNNQFDLQLNIDTNDELQELSDGFKEMAQALKNSFATLEKKVKERTKQLE 376

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA++ K  F+ ++++ELR+PL  IIG+ D L     G LN++Q + ++ I  +S  LL+L
Sbjct: 377 KANQAKREFLGNINHELRTPLNLIIGYIDRLYQD--GYLNNEQKKQLDIIDRNSQHLLSL 434

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFV 681
           +N ILD++ +++G + L  ++  L+ LL  +++      +   + + +    + KL    
Sbjct: 435 INQILDISKIESGHITLQENSFNLSQLLTNLQEVFNLSCYSKGLNLILENKIEDKLNYIY 494

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSS 729
           AD+ +L QI   +L NA+ F+ KG  + + A   N                  VK+ G  
Sbjct: 495 ADKNKLKQILINLLHNAVKFTDKG-MIKISAEVSNHRSLHYSKNQPNYTLRIQVKDTGKG 553

Query: 730 IPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           I  +    +F  F          +G GLGL I   FI L GG++++ SS    TT    I
Sbjct: 554 IAREEISQLFKAFEQTQTGRNLNQGTGLGLYISHQFIKLMGGNITVESSPHSGTTFTLEI 613

Query: 789 PSK 791
           P K
Sbjct: 614 PVK 616


>gi|152986132|ref|YP_001349017.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150961290|gb|ABR83315.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 651

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L    E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++      +Q
Sbjct: 244 EQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQ---TREQ 300

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    + S+  LL ++NDILD + ++ G ++L      L +L+            +  
Sbjct: 301 AEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRG 360

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++      +      D  R+ QI   +L NA+ F+ +GS  + L+    + + +   
Sbjct: 361 LALELQIQAGLEHLEVRGDPTRIRQILVNLLGNALKFTEEGSIHLSLEWQALDHEVLWLT 420

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  I  +  + +F+ F         +  G GLGL+I  +     GG +   S +
Sbjct: 421 CAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAQSKE 480

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 481 GCGSTFTLEIPL 492


>gi|86157556|ref|YP_464341.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774067|gb|ABC80904.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 748

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/505 (18%), Positives = 189/505 (37%), Gaps = 37/505 (7%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNP---SNDELL 356
           ++              V + I D     +++ N++++    +D  F          +E L
Sbjct: 252 LDAARRRFEAAFAEAPVGVLILDPAELRVRWANQAYLAF--LDAPFRGAGVQGLRLEEFL 309

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-------QTLHVIVTSNPR 409
                A  +            +  V      H++  +  +G           V    +  
Sbjct: 310 PRAHEAGLI----------ALLREVAAGDVAHEEQEYRYDGFARGTTWWRWSVRAVESAG 359

Query: 410 GG--TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           GG   + M   +T QV    +     +     +  L  GV +    G++  +N A R +W
Sbjct: 360 GGRDLVLMITEVTEQVRAREQVEADRRRLETVLRVLPVGVLMADAGGQVVQANDAARRIW 419

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVL 526
            +         +    A         + G       + S +     L        + +V+
Sbjct: 420 GSRAPFRPGALYREQRARRADSGTPLAPGDWALQRALRSGEAVGGELVEIDRFDGTQAVV 479

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                P+ + +  +     T     E         LR+A   ++  +Q VS++LR+PL+ 
Sbjct: 480 LNGAAPIRDGEGRVVGAVTTLLDVTE---------LRRAVRNRDEVLQVVSHDLRTPLSA 530

Query: 587 II-GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +  G   L +        ++  +    ++A+   +  L++D+LDL T++ G + +     
Sbjct: 531 VTLGAAALTRLRDGPDAAAQARRAAGRLAAAGRRMNRLIDDLLDLETLEEGRLSMRPEPC 590

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
              DLL E    +        + + + +   L +   DR R+LQ+   + SNA+  + +G
Sbjct: 591 DPADLLGEAADQLREAARAKGLDLCLSAAPGLPAVACDRDRVLQVLGNVASNAVKATEEG 650

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
           +  +   A+ +G  +F +++ G  IP+     VF+RF   +    R G GLGL+I    +
Sbjct: 651 AVCLAAEAQGDGAVVFRIRDTGPGIPDADLPHVFDRFQRGSAARWR-GSGLGLAIARGLV 709

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
             HGG +   S+    TT++  +P+
Sbjct: 710 EAHGGRIWAESAPGAGTTVSFTLPA 734



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/467 (12%), Positives = 135/467 (28%), Gaps = 75/467 (16%)

Query: 28  GTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWD 87
           G ++G LL  + P          LA +V         +   + +   L+     + + WD
Sbjct: 69  GRLSGALLAAVDP--------ERLAARVLPDREGEGSVVAIVDRAGRLVARAPAVPLAWD 120

Query: 88  -------------------------GKDETPEIIG------QLHQRIDIPQTDTDLLSFE 116
                                     +   P  +       +L   +   Q    +L+  
Sbjct: 121 DRLIAGSQDLVRAALAGAEAAGPMRAEGGGPARLAAAVPVPELGWAVRATQPRAAMLAP- 179

Query: 117 NWLKFHHYIKLSKA-TEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
             ++    + ++ A    L   G S+ + A T    A++   R + +             
Sbjct: 180 --MRRELALGVAGAGLVALVALGASWVVGAHTS--RALRRLERHAAALERGEAQGPLTGP 235

Query: 176 SELAETTLKCKKLSNHISV----FKVLFDSLDFLVWHRD-QAGDILWANISYKKNTET-- 228
            E+        +++ H+      F+  F      V   D     + WAN +Y    +   
Sbjct: 236 DEVVRLGAAYAQMARHLDAARRRFEAAFAEAPVGVLILDPAELRVRWANQAYLAFLDAPF 295

Query: 229 -----EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
                +G+  ++ +  + +     + + + +     +           G       VR +
Sbjct: 296 RGAGVQGLRLEEFLPRAHEAGLIALLREVAAGDVAHEEQEYRYDGFARGTTWWRWSVRAV 355

Query: 284 NSFGE----AGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSF 335
            S G       +  +V++++   +Q+      L      L V + + D    +   N + 
Sbjct: 356 ESAGGGRDLVLMITEVTEQVRAREQVEADRRRLETVLRVLPVGVLMADAGGQVVQANDAA 415

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
             +W     F       ++      S   L    +W    +      ++           
Sbjct: 416 RRIWGSRAPFRPGALYREQRARRADSGTPLA-PGDWAL--QRALRSGEAVGGELVEIDRF 472

Query: 396 NGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKV 435
           +G    V+  + P         G +    ++T         + +++V
Sbjct: 473 DGTQAVVLNGAAPIRDGEGRVVGAVTTLLDVTELRRAVRNRDEVLQV 519


>gi|295092339|emb|CBK78446.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 885

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/567 (19%), Positives = 222/567 (39%), Gaps = 55/567 (9%)

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTY--EILHNLTVAIA 320
           T+ ++ H   +   I R      +AG  +  D+ +     +QL H    +++  +   I+
Sbjct: 33  TIFSVRHLMERLDDIRRHPFQVMDAGGTLQNDMDRIRNSFEQLKHINTPKVVEEIRGEIS 92

Query: 321 IF--DQNRYLQFHNRSFV----ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN---- 370
           +   D +R ++    S++    +L  +           D  L++  + ++  +++     
Sbjct: 93  LIYEDTDRQMEILRESYLGDQEDLENLSELMDEIGKEQDAFLDYAAADDRSEDEIVSYST 152

Query: 371 ------WKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRGG----TIWMFENL 419
                 ++ +   +  V   +    + ++   +      I+TS    G     +++++ L
Sbjct: 153 RHLEELYQEFDSQLGEVLDFARNKVEYFYFEADRFCFFAILTSCLVFGAALIILFIYKYL 212

Query: 420 T-VQVDLETKYNTLVKVQGETIDHL--------SEGVAVFGPDGRIKLSNPAFRSLWKTE 470
              Q +   + N L ++    ID++         E   +    GRI    P  + +  T 
Sbjct: 213 LGRQTEQLKRQNQLFELLSRNIDNIFMINDLHHPERNYISENAGRILGFKPDPKKVSPTL 272

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                       +         ES     F     +   ER  L  T  + ++    +  
Sbjct: 273 LFEYMDEQDREKVKQVFD-TVGESYWSCTFHYRHPALAGERIFLLQTYRIWTEGEDRFIT 331

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +     Q + T          ++ L    +   KA+  K+ F+  +S+E+R+P+  IIG 
Sbjct: 332 VLTDQTQILST----------QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM 381

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             ++    LG  +S+    +  I+ SS  LL L+N++LD++ +++G +++          
Sbjct: 382 -GMIAMQNLGD-SSRVEDCIRKINLSSRHLLTLINEVLDMSKIESGRIEIKRDVFDFRLF 439

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L  V   I+ +  +  +   VI  G +      D  R+ QI   +LSNA+ F+ +G +++
Sbjct: 440 LESVSNVISGQARDKGLNFDVIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIV 499

Query: 710 LKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVE 762
           L+ A+ + D       F V + G  I E   + +F  F            G GLGLSI  
Sbjct: 500 LRIAKLDEDSTTVWLKFEVSDTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISR 559

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
            F  L  G +++SS     +T    +P
Sbjct: 560 RFAELMDGRLTVSSQVGKGSTFTLTMP 586


>gi|284052588|ref|ZP_06382798.1| sensory box histidine kinase/response regulator [Arthrospira
           platensis str. Paraca]
          Length = 655

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  ++G T LL  ++   L++KQ  +V+ I  S+  LL ++NDILD + ++
Sbjct: 1   NMSHEIRTPMNGVLGMTGLLLKTE---LDTKQKDFVQAIRTSANHLLAIINDILDFSKLE 57

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSK 693
           A  ++L      L + L  +   +A +     I +  I D  +  ++  D  RL Q+   
Sbjct: 58  AQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQVLLN 117

Query: 694 ILSNAMDFSSKGSTVILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++SN + F+  G  V L+ +R             + V++ G  IP +    +F  F    
Sbjct: 118 LMSNGIKFTPAGE-VTLRVSRPPNYDINAPLILRYEVQDTGIGIPPESHGRLFEAFSQVD 176

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               R   G GLGL I +  +++ GG + + S     +     +P
Sbjct: 177 ASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLP 221


>gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
 gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
          Length = 946

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/565 (17%), Positives = 204/565 (36%), Gaps = 51/565 (9%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L    I++        ++      +      N  + I + +        A+         
Sbjct: 158 LRDVPIERDQALKVLHQRIEQYRNAPQNERGNNLFWISQGVRPGVGYFYALTPVYMANRL 217

Query: 303 DQLTHTYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND- 353
             +    + +         +L +++ IFD N              + +  ++        
Sbjct: 218 QAMLGVEQTIRMESFFTPGSLPMSVTIFDDNGQPLISLAGAEGKIQSEAKWMQERMWFGY 277

Query: 354 ----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                 L   +S +     + +    + +    +    +    ++ +G  L  +     R
Sbjct: 278 SSGFRELVLKKSLSPSSLSIVYSVSVDQVLERIRMLIINAIVLNILSGAMLFALARMYER 337

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWK 468
              I    +         +     +   + +     G+ +    DG   LSN     L  
Sbjct: 338 RIFIPAEND-------AQRLEEHEQFNRKIVASAPVGICILRTADGTNILSN----ELAH 386

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              N L+     R     C +  N       F  ++TS      +LQ +           
Sbjct: 387 NYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTS---NHTNLQISFVHSRYRNENV 436

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  II
Sbjct: 437 AI---------CVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGII 487

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  DLL+T    +L     + V  ++ SS++LL +++DILD + +++  +K+        
Sbjct: 488 GNLDLLQTK---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPR 544

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++N +  +    +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  
Sbjct: 545 EVMNHISANYLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG-C 603

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           ++L           SV++ G  IP      +F+ F       +   +G GLGL+I E  I
Sbjct: 604 IVLHVQCAGDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLI 663

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
           ++  G +++ +     +    RIP 
Sbjct: 664 SMMDGDIAVETEPGMGSRFTIRIPL 688


>gi|256838767|ref|ZP_05544277.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739686|gb|EEU53010.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 657

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 127/248 (51%), Gaps = 6/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N T   +  + L E  E    +D +K++F+ ++S+E+R+PL  I+GF++L+ T       
Sbjct: 415 NNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVT---CDDP 471

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y+  I +++ +LL L+NDILDL+ +++GI++       L  + NE+  +I  KM 
Sbjct: 472 EEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMT 531

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             N+ +++         + DR RL Q++   L+NA+  +  G  + +    +       V
Sbjct: 532 NPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSG-YIKMGYGIEREGLRIYV 590

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++ G  IP+D+   VF RF       Q  G GLGL+I  + +   GG V  +S     +T
Sbjct: 591 EDTGIGIPDDLHDKVFTRFEKLNEFSQ--GTGLGLTISRAIVEAAGGEVGFTSKLGVGST 648

Query: 784 INCRIPSK 791
               +P +
Sbjct: 649 FWAWLPLR 656


>gi|301053530|ref|YP_003791741.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375699|gb|ADK04603.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 453

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 215 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 274 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++
Sbjct: 334 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDD 391

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 392 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 449

Query: 787 RIPS 790
           ++P 
Sbjct: 450 KLPL 453


>gi|160885979|ref|ZP_02066982.1| hypothetical protein BACOVA_03984 [Bacteroides ovatus ATCC 8483]
 gi|156108792|gb|EDO10537.1| hypothetical protein BACOVA_03984 [Bacteroides ovatus ATCC 8483]
          Length = 628

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 111/543 (20%), Positives = 212/543 (39%), Gaps = 44/543 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+GN   Y I  V +    A      S    +         I   L + I ++D +  
Sbjct: 106 TDENGNEIIYGISEVQDGPDMA------SAYQALQYSERLLSNIFKYLPIGIELYDMDGV 159

Query: 328 LQFHNRSFVELWEID--LAFLATNP-SNDELLEFLRSANKLPEQLNWKTWKE--NIFSVY 382
           L   N   +E++ I+     L  N   N    + ++   K  E  ++    +   + S Y
Sbjct: 160 LVDLNDKELEMFHIEKKEDVLGINIFENPIFPKEMKERLKKNEDADFTFRYDFSKVGSYY 219

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           ++++       +    TL+   + +     + +  + T       K     +      D+
Sbjct: 220 QNTQKQGTIDLVTKVTTLYN--SEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDY 277

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G A F       LS   +           +  T + +I  T   ++ +       A 
Sbjct: 278 AKVGYAHFN-----VLSGHGYAQKSWYRNVGEAYETPLSDIFGTYRHFHPDDR-----AL 327

Query: 503 IITSFDDERKSLQGTLE-----LLSDSVLEYSIIPL---------PNAQTMLTFVNVTDS 548
           +I   DD R  L   L      L  D    ++ + L            + +    ++T+ 
Sbjct: 328 LIRFLDDARNGLTTQLSKEMRVLREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITEL 387

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++  +     + 
Sbjct: 388 KRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENAAEKELYNS 447

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            + + +     L+N   D++DL+ +++G ++L    + L +LL+E     A ++    + 
Sbjct: 448 LIGHNNKLLLNLIN---DVIDLSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVE 503

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +             D  R+ QI S  LSNA+  ++ G  V +    D+      VK+ G 
Sbjct: 504 LLTNYPAHDSLVELDSLRIKQILSNFLSNALKNTTTGH-VEVFYEVDHQSVRIGVKDTGR 562

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP++M + +F RF       Q  G GLGLSI +  +    G V + S     TT    +
Sbjct: 563 GIPQNMLEKIFERFEKLDSFAQ--GAGLGLSICKLIVEKMNGRVLVDSQLGIGTTFVIEL 620

Query: 789 PSK 791
           P +
Sbjct: 621 PCR 623


>gi|109900591|ref|YP_663846.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109702872|gb|ABG42792.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1011

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 6/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A R L + N  L +A+  K+ F+ ++S+E+R+PLT+IIG+ D +    +    ++Q + 
Sbjct: 406 EANRKLAKSNHELVEANSAKDYFLANMSHEIRTPLTSIIGYADGILLGDIDK--AEQERV 463

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  +   LL ++NDILDL+ +DA  ++ +     L  LL E++     +  +  I  
Sbjct: 464 TNIIYQNGAHLLRIINDILDLSKIDANKLEFDTQPCHLFTLLGEIESVAGKRARDKGIGF 523

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            V  D  L    + D  RL QI   + +NA+ F+  G  + L  +  N   I  V + G 
Sbjct: 524 HVNYDFPLPDKIITDAVRLKQILFNLTNNALKFTHSGH-ITLNVSIANTTLIIKVIDTGE 582

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I +     +F+ F         Q  G GLGLSI +      GG +S  S     +T   
Sbjct: 583 GISQSDMHKLFHPFTQADSVINRQVGGTGLGLSIAKRLAQGLGGDISALSQLRKGSTFTV 642

Query: 787 RI 788
            I
Sbjct: 643 SI 644


>gi|326576541|gb|EGE26449.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           CO72]
          Length = 988

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 124/293 (42%), Gaps = 20/293 (6%)

Query: 515 QGTLELLSD------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKA 565
            G   LL D        L  S   L N                E     +    +A    
Sbjct: 258 SGEFALLRDDFTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAIST 317

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K++F+ ++S+ELR+PL +I GF +LL     G L  +Q+ YV+ I  SS  LL LVN
Sbjct: 318 SQAKSAFLANISHELRTPLNSIDGFINLLARK--GELTGEQNLYVQTIKKSSAHLLALVN 375

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADR 684
           D+LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D 
Sbjct: 376 DVLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDS 435

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F 
Sbjct: 436 LRVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFG 495

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSI-----SSSDEGVTTINCRIP 789
                   +  G GLGL I +    L GG +        +      T    +P
Sbjct: 496 QGDLSVTRRYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|239625178|ref|ZP_04668209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519408|gb|EEQ59274.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1110

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/689 (15%), Positives = 251/689 (36%), Gaps = 83/689 (12%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLV--WHRDQAG--DILWANISYKKNT 226
           ++ +Y ++ ++    ++L     +   ++D++   +  + R + G   ++  N +  +  
Sbjct: 284 VNSLYLDITQSEANAQRLREQTELLASIYDTVPCGIIRFVRGRDGGYRLISTNRTAIRLL 343

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKR-------MISSSALEKNFCETVSTLEHGNNKSYKI 279
               +    A      L     + +       M      ++   E  +  + G+    + 
Sbjct: 344 GYGTMEEGLADWHDGVLGNVLPQDQEMLRSCYMELRQPGDRQDREYRARWKDGSVHWLEG 403

Query: 280 VRVLNSFGEAGIAI------DVSKEITVNDQLTHTYEILH---NLTVAIA---IFDQNRY 327
             ++ S    G  I      D+++   +  QL    E+       + A+    + D++ +
Sbjct: 404 TNMVVSATPQGDHIIQRTIVDITQRKALQIQLEREQEMYRVSMEASAAVMFEYLMDEDVF 463

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL-----NWKTWKENIFSV- 381
           + +  R  + +   +L           +L  L      P+ +     N    +   F V 
Sbjct: 464 ISYEPRPGMGVCRHEL------HDYSNIL--LEQKIIHPDDIPIVIDNICKGRAETFEVR 515

Query: 382 --YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               +       W+  N + +          G ++    +   +   +++  + +   + 
Sbjct: 516 CSTPAGRPGDYVWYRVNSRLIMEDGKPGRVVGALYNIHEMKSLLFENSEHLYMNQSALQA 575

Query: 440 IDHLSEGVAVFG-----------PD-GRIKLSNPAFRSLWKTEENRLSP--GTHIRNIAA 485
           I+ +   +               PD GR +  + A R      +  L          + +
Sbjct: 576 INGVYVSMFYVNLIQDSYYAVRLPDAGRKRTLSRAGRFSESLNQYILEQTDEADRERVKS 635

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP----------- 534
            C+R +   +       +   F      L G  +  S   LE  ++ +            
Sbjct: 636 MCARDWLLREINQENEHMEAEF-----RLAGPEDGASWYRLEIHLVAMEQNRPKTIIIAI 690

Query: 535 ---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              +++      +  +  +A++AL E   A+ +A++ K+ F+  +S+++R+P+  I+G  
Sbjct: 691 RNISSEKQKELEHREEEKKAKQALEEAYAAVNRANQAKSEFLSRMSHDIRTPMNAILGMA 750

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            + + +       K    +  I  S   LL L+N +LD++ +++G + L  +   L+ ++
Sbjct: 751 AVAEHNLDKG--DKVKDCLSKIHTSGDHLLELINAVLDMSKIESGSICLAENPFSLSCMM 808

Query: 652 NEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +EV Q I T +      + V   G    +   D  R+ +I   +LSNA+ ++ +  T+ +
Sbjct: 809 DEVAQIIQTDIGRKGQHLSVHMQGLGHDAVYGDMVRVKEILLNLLSNAVKYTPENGTIQV 868

Query: 711 KAARD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVE 762
                       G F F V+++G  +  +  + +F  F         Q +G GLGL I  
Sbjct: 869 SLEEKLSSQSGVGCFEFIVEDDGIGMSPEFQEKMFTPFERAEDERVSQIQGTGLGLPITR 928

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
           + + +  G + + S     T     I  K
Sbjct: 929 NLVQMMNGTIGVESHLNKGTRFVVTIYLK 957


>gi|160899786|ref|YP_001565368.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160365370|gb|ABX36983.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1287

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 165/394 (41%), Gaps = 31/394 (7%)

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
               + + ++V+           K     ID +  GV V    G + LSN           
Sbjct: 767  IASLLQLVSVREQAHAAVQANEKKLRAIIDQMPAGVGVSDMSGTMVLSNAIMDRFVP--- 823

Query: 472  NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELL--------- 521
                     R I +T +       GWD     I   +   +++L+G + +          
Sbjct: 824  ---------RAIPSTLADRMPRWKGWDDKGQPIAPENWPGKRALRGEVVMPGLEMLHTDD 874

Query: 522  --SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
               +  +  S  PL +    L           E  L +    L++AD  K+ F+  +++E
Sbjct: 875  DGREWWMRVSCAPLRDDDGQLIGTCSVIQDITE--LKQAEHHLKEADRRKDEFLATLAHE 932

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            LR+PL  I     +LK +  G  + + S   E +      ++ +V+D+L+++ +  G ++
Sbjct: 933  LRNPLAPISHGLQILKRTASGDDSVRHSH--EMLERQVNHMIRMVDDLLEVSRITTGKVQ 990

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            L    + LND+L  V  +    M   + ++++       S +AD  RL Q+ S +L+NA 
Sbjct: 991  LRKELVDLNDVLQGVVAASGAVMEAGSHQLRLELPAAPVSLLADPMRLAQMVSNLLNNAA 1050

Query: 700  DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
             +S  G  ++L A  D    + SV++NG  IP  +   VF+ F+     G+R   G+G+G
Sbjct: 1051 KYSHSGGHIVLAAWTDGAQAVVSVRDNGIGIPPALLGKVFDLFMQVDRNGRRGQGGLGIG 1110

Query: 758  LSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            L++V S + +HGG V   S      +     +P 
Sbjct: 1111 LTLVRSLVEMHGGSVQALSEGKGQGSEFRLYLPL 1144



 Score =  235 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 16/255 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +A      + +AL + D  K  F  ++S+ELR+PLT I+G  +       G + + Q+
Sbjct: 347 HAQAYEQEARRAKALAEVDHAKTVFFSNISHELRTPLTLILGPLEDALREHGGQVPAGQT 406

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q +     ++  L  LVN +LD + ++AG M+ +Y    L     E+     + + +  +
Sbjct: 407 QMI---HRNALRLQKLVNALLDFSRIEAGRMQASYEPTDLARTTAELASMFRSAVEQAGL 463

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-------- 718
           R++V      G    DR    +I   +LSNA  F+ +G   V L+   D  D        
Sbjct: 464 RLRVDCPPLDGPVHVDRDMYEKIVLNLLSNAFKFTLQGEIAVALRDVPDVHDAHGAGGAN 523

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                SV + GS I       +F RF            G G+GL++V+    LHGG V++
Sbjct: 524 GAVELSVTDTGSGIAPQHLPHLFQRFHRIPGKPARTHEGTGIGLAMVQELARLHGGTVTV 583

Query: 775 SSSDEGVTTINCRIP 789
           SS++   +    R+P
Sbjct: 584 SSTEGEGSRFTVRLP 598



 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 43/157 (27%), Gaps = 13/157 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                V         I+  +   + + D +  +   N        +  A  +T       
Sbjct: 779 QAHAAVQANEKKLRAIIDQMPAGVGVSDMSGTMVLSNAIMDRF--VPRAIPSTLADRMPR 836

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRG---- 410
            +         + +  + W        +      +  H   +G+   + V+  P      
Sbjct: 837 WKGWDDKG---QPIAPENWPGKRALRGEVVMPGLEMLHTDDDGREWWMRVSCAPLRDDDG 893

Query: 411 ---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              GT  + +++T     E       + + E +  L+
Sbjct: 894 QLIGTCSVIQDITELKQAEHHLKEADRRKDEFLATLA 930



 Score = 38.8 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 70/253 (27%), Gaps = 33/253 (13%)

Query: 94  EIIGQ-LHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVA---ETQN 149
           EI+G        I +   DL+  +  +      +L  A   LR +  +  +       + 
Sbjct: 681 EIVGDGRAALASIHRQRPDLVLADVMMPVLDGFELLHA---LRSDETTRAIPVIMLSARA 737

Query: 150 DCAIKIEG-RVSGSCAFLRILSLDGIYSELAET-------TLKCKKLSNHISVFKVLFDS 201
               ++EG R       ++  S   + + +A               +  +    + + D 
Sbjct: 738 GQEAQVEGLRAGADDYLVKPFSARELLARIASLLQLVSVREQAHAAVQANEKKLRAIIDQ 797

Query: 202 LDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI--------GESRKLFKEEIKKRMI 253
           +   V   D +G ++ +N    +                      + + +  E    +  
Sbjct: 798 MPAGVGVSDMSGTMVLSNAIMDRFVPRAIPSTLADRMPRWKGWDDKGQPIAPENWPGKRA 857

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQL-- 305
               +     E + T + G     ++             G   +  D+++       L  
Sbjct: 858 LRGEVVMPGLEMLHTDDDGREWWMRVSCAPLRDDDGQLIGTCSVIQDITELKQAEHHLKE 917

Query: 306 --THTYEILHNLT 316
                 E L  L 
Sbjct: 918 ADRRKDEFLATLA 930


>gi|15806193|ref|NP_294898.1| sensory box sensor histidine kinase [Deinococcus radiodurans R1]
 gi|6458911|gb|AAF10744.1|AE001966_6 sensory box sensor histidine kinase [Deinococcus radiodurans R1]
          Length = 1131

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/812 (15%), Positives = 282/812 (34%), Gaps = 94/812 (11%)

Query: 46   RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET---P--EIIGQLH 100
            R+ + L ++  +  +    I   +    +   +   + +V     E    P  E++G   
Sbjct: 345  RELSELERRQQQARAEFEAIFHAMQDAAAFTDDQGRVRLVNRAMAEQFRTPANELVGHPL 404

Query: 101  QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVS 160
              + + +   D  SF++    +            R +G  F    E Q +  +  + R+ 
Sbjct: 405  TMLHVDRRLDDRASFQSITTPYQ-----------RSDGSRF--YGEAQRNEVLGPQNRLL 451

Query: 161  GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
            G    +R         +++E     + L +     + + D++  ++W     G+I + N 
Sbjct: 452  GHLEVVR---------DVSERVAADQALRDEERRSRAILDTIPHMLWVSGPQGEITYVNT 502

Query: 221  SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
             +++     G+  +  +  +     + +        +  ++  +     +    + +++ 
Sbjct: 503  QHREQLGELGVRSR--LDPADVPAYDLMWHEAYIHLSTARSTVQIRVGPDGEERRWFEVR 560

Query: 281  R--VLNSFGEA----GIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF 330
               +L+  G+A      A D+      E            ++  +   + + D      +
Sbjct: 561  VAPLLDEDGQAREWVASATDIHDRLLAERDAQTNEARYRGVVEGMPQIVWLADPQGQATY 620

Query: 331  HNRSFVELWE--IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE--NIFSVYKSSE 386
             NR + E          +A    +D     LR A  +     ++      N    Y++  
Sbjct: 621  FNRRWEEYVGPQAGTDLIAALHPDDREDYRLRWAQAISSGRPFEAEHRLRNELGEYRTFV 680

Query: 387  THKDTWHLPNGQTLHVIVTSNPRGGTIW------MFENLTVQV---------DLETKYNT 431
            T         G+ L  + T+     +++      +  ++T  +             +Y  
Sbjct: 681  TRGLPIRGSQGEVLEWVGTTTDVDDSVYAENAARLLADVTEALVVRAGDPLAQRRERYEA 740

Query: 432  LVK------VQGETIDHL--------SEGV-------AVFGPDGRIKLSNPA----FRSL 466
            +++      ++  TI  L         +GV           PD R+           + +
Sbjct: 741  VLELVMSRLMEAGTIWTLARPGEEPSPDGVELTELASCASNPDWRLPHIVQTVRVLAQRV 800

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             +T E        + +             G D     +              EL+ +   
Sbjct: 801  AQTREPEYVLTHPLLHAVEVSGGVLQPLVGMDGTVHGVLGLAHRHPLHDRDHELIFEIAS 860

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA----LRKADEIKNSFVQHVSYELRS 582
              +     +           +  +  ++L E+ +     L +A+    +F   VS++LR+
Sbjct: 861  RLTTALENDTLREQATDAQHELRQLNQSLEERVQRRTLELEEANRELEAFSYSVSHDLRT 920

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL +I+GF DLL+     +L+ K  +Y+  I+ ++  +  L++ +L+ + +  G   L  
Sbjct: 921  PLRHIVGFGDLLRKDSAEALSPKSQRYLGVITDAAGRMSGLIDSLLEFSRM--GRQPLRL 978

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              + L +L+  V Q++        +R+ +     L     D   L  +F  +LSNA+ +S
Sbjct: 979  VPVDLTELVERVWQNLEPDRQGREVRLTLR---PLPQVPGDPALLELVFQNLLSNALKYS 1035

Query: 703  SKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
                   V + A+ D G    +V +NG          +F  F       +  G+G+GL+ 
Sbjct: 1036 RTREVAQVTVAASEDGGAARITVTDNGVGFDPKYTDKLFGVFQRLHRAEEFDGIGIGLAN 1095

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            V   +  HGG VS SS      T    +P ++
Sbjct: 1096 VRRIVTRHGGQVSGSSVPGEGATFTVVLPLRQ 1127


>gi|116049556|ref|YP_791640.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584777|gb|ABJ10792.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 651

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L    E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++      +Q
Sbjct: 244 EQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQ---TREQ 300

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    + S+  LL ++NDILD + ++ G ++L      L +L+            +  
Sbjct: 301 AEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRG 360

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++     L       D  R+ QI   +L NA+ F+ +G+  + L+    + D +   
Sbjct: 361 LALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLT 420

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  I  +  + +F+ F         +  G GLGL+I  +     GG +   S +
Sbjct: 421 CAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKE 480

Query: 779 EGVTTINCRIPS 790
              +T    IP 
Sbjct: 481 GSGSTFTLEIPL 492


>gi|301384781|ref|ZP_07233199.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060725|ref|ZP_07252266.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302130813|ref|ZP_07256803.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 1123

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L
Sbjct: 648 ERQTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQIL 707

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++
Sbjct: 708 QRD--TTTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDL 765

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++  A    E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V L+ +
Sbjct: 766 EKMFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGEVV-LRVS 824

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 IF + ++G  I  +  + +F  F          GVGLGL+I      L GG +S
Sbjct: 825 YRRETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALS 884

Query: 774 ISSSDEGVTTINCRI 788
           +SS+    T    R+
Sbjct: 885 VSSTPGEGTHFKVRL 899


>gi|295093298|emb|CBK82389.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 672

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/541 (15%), Positives = 188/541 (34%), Gaps = 67/541 (12%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAI---AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           S E       +   E L    + +    + +  R + + N+    L              
Sbjct: 9   SAEEQEKKVQSEIEETLAGAGIGMWTMVLMNDGRSMLYANKKMNALLGTTDDL------- 61

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
                        PE   +  W   I    + +          +G+   +    +P  G 
Sbjct: 62  ------------SPEDR-YVKWIAGITEESQQATAEYMETIRRDGKAEVIYTWMHPTRGL 108

Query: 413 IWM-------------------FENLTVQVDLETKYNTLVKVQGETIDHLSEG---VAVF 450
           + +                    +++T   + E  +   ++ Q   I+ +S     V +F
Sbjct: 109 LHIRCGGVRDRSFTDGIKVRGYHQDITAVRNAEQAHKEELREQDSVIEAVSSIYFIVWIF 168

Query: 451 GPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF-AAIITSFD 508
               G++++           +      G  I N+   C    +       +    +    
Sbjct: 169 NLQTGKVRVIKEGDTFRKPAQNADYEAGKTIENVINDCVVEEDREQMRRFYNLDRLAEKL 228

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQ----------TMLTFVNVTDSVRAERALTEK 558
              KS+              + IP+   +                   + +RA++ L E 
Sbjct: 229 RTEKSVSKDFRDTLYGWCRITAIPVRTDEESELTRILIGVQEIDEEKKEEIRAQKLLAEA 288

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E  ++A+  K  F+  +S+++R+P+  I+G + +    +      +    +  I  +  
Sbjct: 289 YEEAKRANTAKTEFLSRMSHDIRTPINGILGMSRI--AEQCIDDRDRVMDALSKIDDAGK 346

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKL 677
            L  L+ND+LD++ +++G  +L      +  +L      I     EN++++K    + K 
Sbjct: 347 QLELLINDVLDMSRLESGRTELTSEPFDIIKVLRSGYDPILVMAQENDVKLKGAHFNIKH 406

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGDFIFSVKNNGSSIPE 732
              +     L +I   IL+NA+ ++  G TV      +     + +++F + + G  + +
Sbjct: 407 NMVIGSPLHLQRISLNILTNAIKYNKPGGTVEAWMDEIPVDGRHSNYVFRIADTGVGMSQ 466

Query: 733 DMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F  F         + +G GLG++I +  ++L GG + + S     +T   +IP 
Sbjct: 467 EFISHLFEPFSREHTDAGTKYQGTGLGMAITKELLDLMGGSIEVDSKPGVGSTFTMKIPF 526

Query: 791 K 791
           +
Sbjct: 527 E 527


>gi|158338274|ref|YP_001519451.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158308515|gb|ABW30132.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 410

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 152/386 (39%), Gaps = 34/386 (8%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY- 490
           L +     +D + EGV     +G +   NPA   +       L  G  +  +        
Sbjct: 28  LWQHHQLILDAIGEGVYGLDIEGNVTFVNPAAAKMIGWSTAEL-IGQPMHAVLHHSHPNG 86

Query: 491 -YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNAQT-----MLT 541
            +   +   ++AA     D +   +   +    D     +EY   P+ + Q      ++T
Sbjct: 87  SHYPKENCPIYAAFR---DGKVYRVTDEVFWRRDGTCFPVEYISTPIHDEQGQIVGAVVT 143

Query: 542 FVNVTDSVRAE------------------RALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           F ++T    AE                    L + N+ L++   +K+ FV  V +E R+P
Sbjct: 144 FCDITQRQWAESVLKQTNEVLESKVRERTAELEQVNQQLQELSALKSRFVAMVCHEFRNP 203

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L NI      L          +QS+Y+  I+ +   +  +++DIL +  +DA  M+L  +
Sbjct: 204 LNNIALSISSLNRYHSRLTVRQQSEYLAGIAENVERMTEMIDDILVIGKLDAKRMELKSA 263

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + L     ++   + +    + + +       +     D Q L  I + IL NA+ +S 
Sbjct: 264 EVDLVAFCQDLVAEVQSMAPHHVVLLICRHRQLITPI--DVQLLRSILTNILHNAIRYSP 321

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
           +   +  K +R      F + + G  +  +    +F+ F    +     G GLGLSIV+ 
Sbjct: 322 EDGEIQFKVSRRKHIITFQISDQGMGVSPEEQSLIFDPFYRGKNVSNVPGTGLGLSIVKQ 381

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
           F+ L  G +++ S     TT   R+P
Sbjct: 382 FVELLQGTITLDSRIGVGTTFTVRLP 407



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 25/184 (13%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
            H   IL  +   +   D    + F N +  ++     A L   P +  L       +  
Sbjct: 30  QHHQLILDAIGEGVYGLDIEGNVTFVNPAAAKMIGWSTAELIGQPMHAVL------HHSH 83

Query: 366 PEQLNWKTWKENIFSVYKSSETHK---DTWHLPNGQTLHVIVTSNP-------RGGTIWM 415
           P   ++      I++ ++  + ++   + +   +G    V   S P         G +  
Sbjct: 84  PNGSHYPKENCPIYAAFRDGKVYRVTDEVFWRRDGTCFPVEYISTPIHDEQGQIVGAVVT 143

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F ++T +   E    +++K   E ++       V      ++  N   + L   +   ++
Sbjct: 144 FCDITQRQWAE----SVLKQTNEVLES-----KVRERTAELEQVNQQLQELSALKSRFVA 194

Query: 476 PGTH 479
              H
Sbjct: 195 MVCH 198


>gi|124007263|ref|ZP_01691971.1| PAS [Microscilla marina ATCC 23134]
 gi|123987293|gb|EAY27022.1| PAS [Microscilla marina ATCC 23134]
          Length = 1386

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 196/518 (37%), Gaps = 35/518 (6%)

Query: 290  GIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFDQNRYL--QFHNRSFVELWEIDLAF 345
            G  +D+++   +   L  +   L     +  +  +D N        N  + ++       
Sbjct: 602  GTQLDITESKQMLQDLKESENRLELALSSAGLGTWDWNLQTGEIIFNERWAKILGYTPEE 661

Query: 346  LATNPSNDELLEFLRSANKLPEQL--NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            +A N S  E +          EQ   +    K  I+   +   T    W L  G+     
Sbjct: 662  IAPNISTWEKIRVHPEDMPRVEQALSDHLEGKTTIYREEQRLMTKSGKWVLDTGKVFVRA 721

Query: 404  VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                P    +    ++  +   E +  +L        +  S GV          + +   
Sbjct: 722  KHGAPLRA-VGTCLDIDERKRNEEELKSLNHKFQLAYEAASIGVWEHNYKTEQSIWDDKM 780

Query: 464  RSLWKTEENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ---GTL 518
              ++              I  +     R   + +    F   IT  ++E + +     T 
Sbjct: 781  YEIFGVSRQTFKTEKQSWIEQLVHPDDRNRLKEEIATFFHLGITIQENEFRVITPGGKTK 840

Query: 519  ELLSDSVLEY--SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             L S + +EY  S  PL         +++T    AE    + ++A          F+ ++
Sbjct: 841  YLKSSAYIEYDNSGNPLFGTGL---SIDLTYIKEAEAKAKQASKAKS-------EFLANM 890

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+E+R+PL  +IGF DLL  +   SLN  Q +Y++ +  S+  LL+++ DILD + ++AG
Sbjct: 891  SHEIRTPLNGVIGFVDLLLET---SLNESQKEYLKTVHQSAHTLLDIITDILDFSKIEAG 947

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
             M+++ +   L  L+N+V   +   +++  + + +     L     AD  R  QI + ++
Sbjct: 948  KMEISITQTDLMHLINQVVSVVKYTVYQKKLELLLDLSDDLPQFIYADDVRFKQILTNLM 1007

Query: 696  SNAMDFSSKGSTV----ILKAARDNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            SNA+ F+  G  V    +LK   DN     FSVK+ G  I  +    V   F        
Sbjct: 1008 SNAVKFTEAGEVVLKVELLKQLPDNEAIFRFSVKDTGVGIAPEKQSKVLEAFSQEDASTT 1067

Query: 751  R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            R   G GLGL+I    + L    + + S     +    
Sbjct: 1068 RKFGGTGLGLTITNKLLKLMESRLKLKSVPGEGSIFYF 1105



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 92/278 (33%), Gaps = 22/278 (7%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +  V +       +    + AI + +  +R +   N++ V+L       L     ND + 
Sbjct: 239 QQQVTEHQGKYQALFELASDAIMLINPVSREIIDANQATVQLLGHSKKELQKLNRNDIIA 298

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGT 412
             +R           + W + +    ++       W    G+T+ V V       P    
Sbjct: 299 AEVRDETL-------QNWTKQLAEKEEAR--LDTVWVNKEGKTILVEVLGKIIHLPGEEV 349

Query: 413 IWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           + +   + T  + ++ +      +     ++  + + +   +GR    NPA   L    +
Sbjct: 350 LMLIGRDRTEYIKIQQELQQSHLIYQSLFENALDAILLVNDEGRYVDVNPAACKLLGYSK 409

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L     + +I    ++   +            + + E     GT       + E+  +
Sbjct: 410 AELLN-LSVWDITPGTNQTEGKKIWQTFINQAYLTGEYEVICKDGTR-----RITEFHAV 463

Query: 532 P-LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           P +     +    ++T     E+AL +    L++A + 
Sbjct: 464 PNIQAGLHLSNLQDITGRKAMEKALADTTRDLKEAVQA 501



 Score = 38.8 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 49/422 (11%), Positives = 123/422 (29%), Gaps = 38/422 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           I  +  E     ++L     +++ LF++    +   +  G  +  N +  K         
Sbjct: 353 IGRDRTEYIKIQQELQQSHLIYQSLFENALDAILLVNDEGRYVDVNPAACKLLGYSKAEL 412

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE--HGNNKSYKIVRVLNSFGEAGI 291
                        + + + I  + + + +      +    G  +  +   V N      +
Sbjct: 413 LNLSVWDITPGTNQTEGKKIWQTFINQAYLTGEYEVICKDGTRRITEFHAVPNIQAGLHL 472

Query: 292 A--IDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNR--------SFVE 337
           +   D++    +   L        E +    V +  +D +     ++         +  +
Sbjct: 473 SNLQDITGRKAMEKALADTTRDLKEAVQAGNVGLWYWDLHTNTVEYSPEWKKQLGYAEED 532

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           ++     F +    +D+ L   + A  +  ++    W   +          KD ++    
Sbjct: 533 VFNTFEDFTSRVHPDDQPLLNAKIAEVMAGEVQKIEWSFRLRR--------KDDFYCW-- 582

Query: 398 QTLHVIVTSNPRGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            +L     +N  G  +       ++T    +              +     G   +    
Sbjct: 583 VSLQGAAFTNAAGNLVRIKGTQLDITESKQMLQDLKESENRLELALSSAGLGTWDWNLQT 642

Query: 455 RIKLSNPAFRSLWKTEE----NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
              + N  +  +           +S    IR       R   E    D      T + +E
Sbjct: 643 GEIIFNERWAKILGYTPEEIAPNISTWEKIRVHPEDMPRV--EQALSDHLEGKTTIYREE 700

Query: 511 RK--SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           ++  +  G   L +  V   +    P  + + T +++ +  R E  L   N   + A E 
Sbjct: 701 QRLMTKSGKWVLDTGKVFVRAKHGAP-LRAVGTCLDIDERKRNEEELKSLNHKFQLAYEA 759

Query: 569 KN 570
            +
Sbjct: 760 AS 761


>gi|57866958|ref|YP_188631.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A]
 gi|57637616|gb|AAW54404.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A]
          Length = 589

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 166/422 (39%), Gaps = 45/422 (10%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
            I    +  +T        +   +  + T +  G     F N+ V++    K  +  K  
Sbjct: 200 RITKPLRQLKTQAQKVSEGDYSQISTVATKDEIGDLSRAFNNMNVEIQEHIKAISSSKNI 259

Query: 437 GETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
            +T+ + + EGV        I LSN     + +          HI +             
Sbjct: 260 RDTLLNSMVEGVLGINNQREIILSNKMADDIMR----------HIDDF------------ 297

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--- 552
                     S +   + ++ T E   +  LE  I    N +  +   +  D ++     
Sbjct: 298 ----------SKESIEQQIEATFESQQNEYLELEI----NTRYYVFISSYIDRIQTNGRS 343

Query: 553 --RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               +          D++K  F+ +VS+ELR+P++ + G+T+ +    +   + +    +
Sbjct: 344 GIVMVIRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPD-EIRDSL 402

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +   S  L  LVN++L++A +DA  + +      +  LL++++     +  E  + + 
Sbjct: 403 AIVLDESKRLNRLVNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMT 462

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             S+     +  D  R+ Q+ + ++ NA  ++  G ++ +    D+   I ++ + G+ I
Sbjct: 463 FDSNNDEQLWNYDMDRMDQVLTNLIDNATRYTQAGDSIKISIDEDSDFNILTITDTGTGI 522

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  K VF+RF       +R   G GLGL I +  I  HGG + + S     T+   R+
Sbjct: 523 APEHLKQVFDRFYKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRL 582

Query: 789 PS 790
           P 
Sbjct: 583 PK 584


>gi|332981850|ref|YP_004463291.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699528|gb|AEE96469.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 477

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 3/258 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +  T     +  +  +    L      + K +++K+ F+  VS+ELR+PLT I G+  ++
Sbjct: 214 DFNTRSRKRSNDEIGQLSDTLNYMAGEIIKKEKLKDEFIASVSHELRTPLTAIKGWA-II 272

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +          + +  IS  +  L ++V D+LD + + +G M+LN     +  +   V
Sbjct: 273 LDTDDMDDRKLLKEGLGIISNEADRLSSIVEDLLDFSKLASGKMRLNRRKTDVKSVAEYV 332

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           K  +A     N I+        +     D  R+ Q+   +L NA  F+  G  V L A  
Sbjct: 333 KTHMAPVAERNAIQFTTQCRDDIPVAYMDADRMKQVLINVLDNAFKFTDTGGEVELMAWA 392

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +NG  IF VK+NGS I E+    +  +F    +       GLGLSI +  + LHGG + I
Sbjct: 393 ENGHLIFDVKDNGSGIDEEDLAHIKQKFYKGKNSKAS--SGLGLSIADEIVRLHGGSMDI 450

Query: 775 SSSDEGVTTINCRIPSKE 792
            SS    TT+  RIP ++
Sbjct: 451 DSSLNEGTTVTIRIPLEQ 468


>gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 933

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 12/246 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LN+ Q+ Y+  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTPLNTTQTDYLLTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++ND+LD + ++AG + L      L++ L++V   +A   HE  + + +  
Sbjct: 335 ERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSI 394

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---GDFIFSVKNNGS 728
              +   FV D  R+ QI + +L NA+ F+ +G+  + ++  R           +++ G 
Sbjct: 395 QNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHHVQLEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWF 514

Query: 787 --RIPS 790
              +P 
Sbjct: 515 HITLPL 520


>gi|229524739|ref|ZP_04414144.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|229338320|gb|EEO03337.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
          Length = 1147

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSLV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGVGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|322831385|ref|YP_004211412.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
 gi|321166586|gb|ADW72285.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
          Length = 916

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 10/241 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    L+  Q+ Y++ I
Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTPLSPTQADYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L +    L ++L+EV   +A   H+  + + +  
Sbjct: 334 ERSANHLLTIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHTAHDKGLELTLNV 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGS 728
              +    + D  R+ Q+ + +L NA+ F+  G+  + ++    N    +    + + G 
Sbjct: 394 HNNVPENVLGDPMRMQQVVTNLLGNAIKFTETGNIDINVELRSQNNLQVELEVQIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 454 GISERQQSQLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGSTFWF 513

Query: 787 R 787
            
Sbjct: 514 H 514


>gi|295696526|ref|YP_003589764.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
 gi|295412128|gb|ADG06620.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
          Length = 467

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 7/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     +A  E    L + +E +   V  V++ELR+PLT I G  +L++     +     
Sbjct: 205 EFGEVAQAFNEMALQLSRIEETRRHLVADVAHELRTPLTIIQGQLELIQQGVKRAEPET- 263

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  I      L  LV D+  L+  +AG + L  +   L  L   +  +   +     
Sbjct: 264 ---LLPIQDEVMRLTRLVGDLHQLSLAEAGRLPLEKTWTDLTALAGRIVDNFQIEAEAKE 320

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I + + +   +  +V D  R+ Q+   ++ NA+ ++  G T+ +   ++  + I +V + 
Sbjct: 321 ITLSLEASDSIPVYV-DPHRMTQVIVNLVGNALRYTPTGGTIRIVVRQEGSEAILAVSDT 379

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    +F+RF  +      +  G GLGL+I + F+  HGG +   S     TT 
Sbjct: 380 GPGIRPEHLPHIFDRFFRSDEARSREEGGTGLGLAIAKEFVEAHGGRIGAESRPGEGTTF 439

Query: 785 NCRIPS 790
             R+P 
Sbjct: 440 TVRLPK 445


>gi|288957783|ref|YP_003448124.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910091|dbj|BAI71580.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 593

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 26/294 (8%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A +++     R+S +G +    ++VL                      +   R L  + 
Sbjct: 322 LALLVSRAYGRRRSAEGEVRRAREAVL----------------------IEQRRRLQSEK 359

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    A++ K+ F+ ++S+ELR+PL  IIGF D+L +   G    K ++Y+  I  S   
Sbjct: 360 ELAEAANQAKSEFLANMSHELRTPLNAIIGFADVLMSGIFGPAPPKHAEYLTAIHQSGRH 419

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+LVN++LD+A ++AG ++L  + I L+D L +    +        + +   +      
Sbjct: 420 LLDLVNELLDMAKIEAGRLELFPTRIALDDFLTDCLGLVEALALRKGVTLTGDAIAPGLL 479

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKS 737
             AD  R+ Q    +LSNA+ F+  G TV L+A    D    + +V+++G  +  +    
Sbjct: 480 VTADGVRMRQAVLNLLSNAIKFTPAGGTVRLEATADPDGSGTVITVRDSGIGMNAEEMLI 539

Query: 738 VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               F    +       G GLGL +   F+  HGG +++ S     TT+  R+P
Sbjct: 540 AMEPFRQVHNYLTKAEAGTGLGLPLARRFVEAHGGTLTLDSRPGAGTTVTIRLP 593


>gi|71909695|ref|YP_287282.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849316|gb|AAZ48812.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 631

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/351 (21%), Positives = 147/351 (41%), Gaps = 32/351 (9%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---------FDDERKSLQGT 517
           +  +   L  G  +  I    ++ +++     L   ++++                L   
Sbjct: 137 YGQKMGSLHIGIDLSQIRTAHNQLFSQGIFIALIEMLLSAGLMILLGYFLTRHLAGLTQA 196

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA--ERALT---------EKNEALRKAD 566
            E ++   L    +P  N +            RA  ER L              +   A 
Sbjct: 197 SEAVAAGNLTPPPVPEGNDEVGRLGAAFNAMSRAVAERILELTASRDEQARLARSAETAA 256

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K SF+  +S+E+R+P+  I+G T+L   +    L  +Q +Y+ ++ +S   L+ ++ND
Sbjct: 257 RAKTSFLATMSHEIRTPMNGILGMTEL---TLATDLTEEQREYLTWVKSSGDNLMRVLND 313

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
           ILD + ++AG + L +  + L+ LL+ V    ++      +R+   +D +L    + D  
Sbjct: 314 ILDFSKINAGELNLEHIPLDLSSLLDSVVALYSSVAANKGLRLYWAADTELPEHLLGDPV 373

Query: 686 RLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVF 739
           R+ Q+ + +LSNA+ F+  G   + +   +   +       F+V + G  IP     ++F
Sbjct: 374 RIQQVLNNLLSNALKFTEHGEVAIRVHCEKTLENSKVWRVHFTVADTGIGIPASKLGNIF 433

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + F         +  G GLGLSIVE  + L  G + + S+    T  +  I
Sbjct: 434 DPFAQAEEWTTRKYGGTGLGLSIVERLVRLMHGEIRVESAVGEGTRFHLLI 484


>gi|27468093|ref|NP_764730.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           epidermidis ATCC 12228]
 gi|251810908|ref|ZP_04825381.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876083|ref|ZP_06284950.1| sensor protein SrrB [Staphylococcus epidermidis SK135]
 gi|293366548|ref|ZP_06613225.1| sensor histidine kinase SrrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315639|gb|AAO04774.1|AE016748_8 staphylococcal respiratory response protein SrrB [Staphylococcus
           epidermidis ATCC 12228]
 gi|251805588|gb|EES58245.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295108|gb|EFA87635.1| sensor protein SrrB [Staphylococcus epidermidis SK135]
 gi|291319317|gb|EFE59686.1| sensor histidine kinase SrrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725412|gb|EGG61895.1| sensor protein SrrB [Staphylococcus epidermidis VCU144]
 gi|329735207|gb|EGG71499.1| sensor protein SrrB [Staphylococcus epidermidis VCU045]
 gi|329737238|gb|EGG73492.1| sensor protein SrrB [Staphylococcus epidermidis VCU028]
          Length = 588

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 166/422 (39%), Gaps = 45/422 (10%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
            I    +  +T        +   +  + T +  G     F N+ V++    K  +  K  
Sbjct: 199 RITKPLRQLKTQAQKVSEGDYSQISTVATKDEIGDLSRAFNNMNVEIQEHIKAISSSKNI 258

Query: 437 GETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
            +T+ + + EGV        I LSN     + +          HI +             
Sbjct: 259 RDTLLNSMVEGVLGINNQREIILSNKMADDIMR----------HIDDF------------ 296

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--- 552
                     S +   + ++ T E   +  LE  I    N +  +   +  D ++     
Sbjct: 297 ----------SKESIEQQIEATFESQQNEYLELEI----NTRYYVFISSYIDRIQTNGRS 342

Query: 553 --RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               +          D++K  F+ +VS+ELR+P++ + G+T+ +    +   + +    +
Sbjct: 343 GIVMVIRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPD-EIRDSL 401

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +   S  L  LVN++L++A +DA  + +      +  LL++++     +  E  + + 
Sbjct: 402 AIVLDESKRLNRLVNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMT 461

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             S+     +  D  R+ Q+ + ++ NA  ++  G ++ +    D+   I ++ + G+ I
Sbjct: 462 FDSNNDEQLWNYDMDRMDQVLTNLIDNATRYTQAGDSIKISIDEDSDFNILTITDTGTGI 521

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  K VF+RF       +R   G GLGL I +  I  HGG + + S     T+   R+
Sbjct: 522 APEHLKQVFDRFYKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRL 581

Query: 789 PS 790
           P 
Sbjct: 582 PK 583


>gi|219849075|ref|YP_002463508.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543334|gb|ACL25072.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 482

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG----SLNSKQSQYVEYISASSTILLN 622
             K++F+  +S+ELR+PL  IIGF+  +           ++ +  Q +  I  S   LL 
Sbjct: 243 RSKSNFMATMSHELRTPLNIIIGFSTAMIEHPEMYGDVKIDEQVLQDIAEIRRSGQHLLG 302

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILDLA ++AG ++LN + + L  LL+E  ++    + +  I+++      L + +A
Sbjct: 303 LINDILDLAKIEAGKLELNRTNLALPPLLDETIRTAQALIGDRPIQLRREYHDSLPTVLA 362

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  R+ Q+   ++SNA  F+  G  + + A  +    +  V++ G  I     + +F +F
Sbjct: 363 DEVRIRQVLLNLVSNACKFTHMGE-IAVGARAETDQVVLWVRDTGIGIAPADQERIFQQF 421

Query: 743 VS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               NA      G GLGLSI    I LHGG + + S     +     +P
Sbjct: 422 EQVENADTRHHAGTGLGLSICRWLIELHGGRMWLESEVGKGSIFFFSLP 470


>gi|121729647|ref|ZP_01682124.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|121628581|gb|EAX61060.1| sensor histidine kinase [Vibrio cholerae V52]
          Length = 1147

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPLGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 1003



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E  L  +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPLGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|313611039|gb|EFR85926.1| sensor protein kinase WalK [Listeria monocytogenes FSL F2-208]
          Length = 440

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 151/383 (39%), Gaps = 26/383 (6%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  LT +V + +       +     + ++++GV      G++ L N     + +
Sbjct: 71  GELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLR 130

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            + +  + G  I ++      Y      ++    +  S   +R +      L ++    +
Sbjct: 131 VK-HESANGRSIIDVLDIGDTY-----QFEDLMEVDGSLTMDRSTFDKPYVLRAN----F 180

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I             + D    E           K D+ +  FV +VS+ELR+PLT++ 
Sbjct: 181 SVIQRETGFNNGVIAVLHDITDQE-----------KVDQERRDFVSNVSHELRTPLTSMH 229

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            + + L             +++E     +  ++ LVND+L L+ +D G  +L  S +   
Sbjct: 230 SYLEALSDGAWED-KEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFT 288

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D  N +       M +  I  K     +      D  +++Q+   I+SNA  +S  G  +
Sbjct: 289 DFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSPDGGRI 347

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
                +   +   S+ + G  +P++   +VF+RF  V  A   +  G GLGL+I    I 
Sbjct: 348 SFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIE 407

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            HGG +    +    T I   +P
Sbjct: 408 AHGGRIWAERNKTKGTIIKFTLP 430


>gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae NTUH-K2044]
 gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 946

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/565 (17%), Positives = 204/565 (36%), Gaps = 51/565 (9%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L    I++        ++      +      N  + I + +        A+         
Sbjct: 158 LRDVPIERDQALKVLHQRIEQYRNAPQNERGNNLFWISQGVRPGVGYFYALTPVYMANRL 217

Query: 303 DQLTHTYEILH--------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND- 353
             +    + +         +L +++ IFD N              + +  ++        
Sbjct: 218 QAMLGVEQTIRMESFFTPGSLPMSVTIFDDNGQPLISLAGAEGKIQSEAKWMQERMWFGY 277

Query: 354 ----ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
                 L   +S +     + +    + +    +    +    ++ +G  L  +     R
Sbjct: 278 SSGFRELVLKKSLSPSSLSIVYSVSVDQVLERIRMLIINAIVLNILSGAMLFALARMYER 337

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWK 468
              I    +         +     +   + +     G+ +    DG   LSN     L  
Sbjct: 338 RIFIPAEND-------AQRLEEHEQFNRKIVASAPVGICILRTADGTNILSN----ELAH 386

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
              N L+     R     C +  N       F  ++TS      +LQ +           
Sbjct: 387 NYLNMLTHEDRQRLTQIICGQQVN-------FVDVLTS---NHTNLQISFVHSRYRNENV 436

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I            V+V+  V+ E +L E  +A  +A + K+ F+  VS+ELR+PL  II
Sbjct: 437 AI---------CVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGII 487

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  DLL+T    +L     + V  ++ SS++LL +++DILD + +++  +K+        
Sbjct: 488 GNLDLLQTK---ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPR 544

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
           +++N +  +    +    + +    +  +      D  RL Q+ S +LSNA+ F+  G  
Sbjct: 545 EVMNHISANYLPLVVRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG-C 603

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           ++L           SV++ G  IP      +F+ F       +   +G GLGL+I E  I
Sbjct: 604 IVLHVQCAGDYLQISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLI 663

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
           ++  G +++ +     +    RIP 
Sbjct: 664 SMMDGDIAVETEPGMGSRFTIRIPL 688


>gi|329114863|ref|ZP_08243619.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001]
 gi|326695760|gb|EGE47445.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001]
          Length = 946

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 126/255 (49%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R ++ L +  E    A+  K+ F+  VS+E+R+PL +I+G+  LL+ 
Sbjct: 645 QTRLLMREIHAHKRTDQELKKAKERAESANLSKSRFMVGVSHEIRTPLNSIMGYAYLLEN 704

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L     KQ++ ++ I  S+  L  L+  + D++ ++AG M++    I   + L  + +
Sbjct: 705 KMLTP--EKQNEGLKVIQRSTEHLSGLIEGLFDISKIEAGRMEILREKINFREFLKHLTE 762

Query: 657 SIATKMHENN-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  ++++   + I+ I D      + D++RL QI   +LSNA+ F+  GS V      +
Sbjct: 763 MLRFQVNQKKLLFIEHIPDDLPEYVMTDQRRLRQILINLLSNAIKFTPSGS-VSFSVRWN 821

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
               IF +++ G  IP    + +   F  ++H      +G GLGL+I    + + GG ++
Sbjct: 822 MEIAIFEIQDTGIGIPATDIERIHEPFQRSSHPASQSIQGTGLGLTITRLLVQILGGELT 881

Query: 774 ISSSDEGVTTINCRI 788
           I S     TT   R+
Sbjct: 882 IKSQVGLGTTCRVRL 896


>gi|294627008|ref|ZP_06705598.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598670|gb|EFF42817.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1068

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K G+L+++Q +Y 
Sbjct: 359 AQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVKYA 418

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L   T+V   +L  ++++      +  + ++
Sbjct: 419 QAILSSNNDLLALINDILDLSKIEAGHVELADETVVTGSVLQRLRETFEPLARQKGLALE 478

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +  + G     V D QRL QI   +L+NA+ F+  G   +   A   G   F+V + G  
Sbjct: 479 ITAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKVGLTVQAHAPGRVRFAVTDTGIG 538

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 539 IAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLE 598

Query: 788 IPS 790
           +P+
Sbjct: 599 LPT 601


>gi|229589756|ref|YP_002871875.1| putative two-component system fusion protein [Pseudomonas
           fluorescens SBW25]
 gi|229361622|emb|CAY48502.1| putative two-component system, fusion protein [Pseudomonas
           fluorescens SBW25]
          Length = 1243

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 135/326 (41%), Gaps = 23/326 (7%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A+  R     D     A++     DE   +   + +  ++ L   ++            
Sbjct: 454 LASAMRRLAAGDLNAAIASVGRG--DEIGIMTRAVRVFQENALRIRVLEAEAEAERQQVQ 511

Query: 544 NVTDSVRAER----------------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
              + + AER                 L +       A++ K+ FV  VS+ELR+PLT I
Sbjct: 512 ASLERMVAERTDTLHQQTEVLEAQAVELIQARNQAETANQAKSDFVATVSHELRTPLTLI 571

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +   + L  + L   + +    ++    ++  L+N VNDILD +  +AG  +L  + I L
Sbjct: 572 LAPLEQLSAATLPPADWRVQ--IDRAQRNALRLMNRVNDILDFSKAEAGKFELCPAPIDL 629

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           N ++  + +  A         +    D  LG+   D +   +I   ++SNA+ F+  G T
Sbjct: 630 NKMVGVLAEDAAMVAEGKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGT 689

Query: 708 VILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           V L     D   F  +V+++G  I  D    +F RF    +   R   G G+GL++V+  
Sbjct: 690 VHLAVTALDGDRFELAVQDSGIGIAPDKLPLLFQRFSQIDNSATRHYSGTGIGLALVKYL 749

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           + L GG V ++S     +    R+P 
Sbjct: 750 VELMGGEVGVNSEPGQGSCFFVRLPL 775



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 11/155 (7%)

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             T+ +  L+ +  +  A  +    + +       L     DR R+L I   ++ NA    
Sbjct: 1085 ETVSVPALIEDALRLSAGSLARQEVAVVKEI-ADLPLLSLDRHRVLLILVNLIGNARQAM 1143

Query: 703  S----KGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
                 +   + L A+  D      SV +NG+ I  +    +F    S+    ++ G G G
Sbjct: 1144 DGVVDRNPCITLDASLVDGSVLRMSVADNGNGIAPEHLARIF----SHGFTTRKDGHGFG 1199

Query: 758  LSIVESFINLHGGHVSISSSD-EGVTTINCRIPSK 791
            L          GG +++ S       T    IP +
Sbjct: 1200 LHSCALAAQEMGGRLTMHSDGAGQGATFTLDIPLE 1234


>gi|254462752|ref|ZP_05076168.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
 gi|206679341|gb|EDZ43828.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
          Length = 745

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 12/233 (5%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K  F+  +S+E+R+P+  ++G  ++L+ SK   L ++QS+ VE I  SST LL+++ 
Sbjct: 219 SRAKTDFLAAMSHEIRTPMNGVVGMVEILENSK---LTTEQSRIVETIRDSSTALLSIIE 275

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           +ILD++ ++AG ++L      +  +  +   ++      +++ + +  D  L  ++  D 
Sbjct: 276 NILDMSRIEAGKLELKLQKTEVLSVFEKSADTLRHFAEAHHVTLLMNYDPDLPKYMSCDS 335

Query: 685 QRLLQIFSKILSNAMDFS------SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            RL QI   +LSNA+ FS       KG  ++     D  D    V ++G  I E+   S+
Sbjct: 336 GRLRQIILNLLSNAIKFSKRPPEDPKGQVILTVGFSDKDDLKVEVSDDGIGIGEEFLSSL 395

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ F  +A   R +  G GLGL+IV   I    G + + S     TT    +P
Sbjct: 396 FDPFEQSAEVRRHEFGGSGLGLAIVSQLIEKLNGSIGVQSQRGQGTTFTVHLP 448


>gi|91772433|ref|YP_565125.1| histidine kinase [Methanococcoides burtonii DSM 6242]
 gi|91711448|gb|ABE51375.1| Histidine kinase domain protein [Methanococcoides burtonii DSM
           6242]
          Length = 235

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 116/226 (51%), Gaps = 3/226 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ F+ ++S+E+R+PL ++IGF+ +L   K G+ +  Q +Y+  I  +   LL + N
Sbjct: 8   NLSKSEFIMNMSHEVRTPLNSVIGFSSVLLD-KPGNRDESQVRYLHNILFNGKHLLEIFN 66

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +IL ++ +++G M       +++++++E++ S+     E  I +  I D +     AD  
Sbjct: 67  EILAISKIESGAMVFQPKKFLISNVISEIETSMMPFALEKGIILTHIIDVENAIMNADEF 126

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           +   I   ++ NA+ F+  G  V ++  +      F VK+ G  I       +F +F   
Sbjct: 127 KFKHILYNLVHNAIKFTPDGRHVTIETKKCGKSMCFFVKDTGIGILPTNQIKLFEQFYQV 186

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                R   G+GLGL+IV+ F+ +HGG V I S  E  +T    IP
Sbjct: 187 DSSTTRKYGGIGLGLNIVKKFVEIHGGKVWIESEVEKGSTFGFSIP 232


>gi|89895636|ref|YP_519123.1| hypothetical protein DSY2890 [Desulfitobacterium hafniense Y51]
 gi|89335084|dbj|BAE84679.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 467

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 147/363 (40%), Gaps = 25/363 (6%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     +  + EGV      GRI L N A   L+             R   A   +
Sbjct: 112 RQEAQKIQAILAGMQEGVISLDHVGRIVLLNRAAERLFG------------REQEAVRDK 159

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
           +++E  G++    ++T   ++  S Q  L   S  ++   + P+   +       +    
Sbjct: 160 HFSELCGFEELGDLVTQALEKGSSGQIELATNSKLMIRAQVSPISGERARSQGAVIVCYD 219

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E         +R+ + ++  FV +VS+ELR+PLT+I GF + L       +   + ++
Sbjct: 220 ITE---------IRRLELLRTEFVGNVSHELRTPLTSIKGFVETLLDGA-SEVPHLRERF 269

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   +  L  LV+++L L+ ++            + +   +++  I        + +
Sbjct: 270 LNIIHKETLRLQRLVDELLTLSRIENQRQDAGQGMSKVQEAYEKIRPVIEPYAEAKKVEL 329

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++     L         L Q+   ++ NA+ ++ KG  V L A  D+G  +    + G  
Sbjct: 330 EIKIPKDLPEVAMGIDLLSQVLLNLMENAVKYTVKG-KVWLHAFHDDGKILLEFGDTGCG 388

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    +F RF         ++ G GLGLSIV+  +    G ++++S     +   C 
Sbjct: 389 IPKEDLPRIFERFYRVDKARSREQGGTGLGLSIVKHIVEGAKGKITVASELGSGSVFICE 448

Query: 788 IPS 790
           +P+
Sbjct: 449 LPT 451


>gi|312868489|ref|ZP_07728689.1| PAS domain S-box protein [Streptococcus parasanguinis F0405]
 gi|311096234|gb|EFQ54478.1| PAS domain S-box protein [Streptococcus parasanguinis F0405]
          Length = 450

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 138/382 (36%), Gaps = 30/382 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I + N           + +
Sbjct: 75  INDLSEVIRLTHENLEQETKRLTSILSYMTDGVLATNRRGQIIMVNEMAAKQLNVNPDEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T I ++ +    Y   S   ++    I S D+  + L   +         +++I   
Sbjct: 135 LN-TSILDLLSLGDDYDLRSLITEVPELTIDSQDENGEYLSLRVR--------FALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   ++            +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQDKE-----------ERERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +V+     +  ++ +V D+L L+ +D    +L+         +  +
Sbjct: 235 DDGALS--EPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSQLDIELTNFTAFITFI 292

Query: 655 KQSI-----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                     ++       +             D  ++ Q+   IL+NA+ +S  G  + 
Sbjct: 293 LNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKMTQVIDNILNNAIKYSPDGGKIK 352

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +     +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  
Sbjct: 353 VGMRTTDAQLIISISDEGLGIPKKDLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQ 412

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G +   S     +T    +P
Sbjct: 413 HKGFIWAKSEYGKGSTFTIVLP 434


>gi|121585863|ref|ZP_01675657.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|121550001|gb|EAX60019.1| sensor histidine kinase [Vibrio cholerae 2740-80]
          Length = 736

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 140/331 (42%), Gaps = 14/331 (4%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           +  +   ++   H+  I         +     L   ++  +          + L++  V 
Sbjct: 252 FNWQIEVVNANQHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVS 311

Query: 527 EYS---IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           E     II +           +    +    L  +    + + + K++F+  +S+E+R+P
Sbjct: 312 ESREGEIIDIRYKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTP 371

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  ++G   +L   +   L SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S
Sbjct: 372 MNGVLGTAQILLKDE---LTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHS 428

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
              L  ++  +K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+
Sbjct: 429 AFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFT 488

Query: 703 SKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             G  V +  +     +    I  V++ G  I ++    +F  F        RR  G GL
Sbjct: 489 EAG-FVAIGLSEESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGL 547

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GL+IV+    L  G V + S     +    R
Sbjct: 548 GLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 578


>gi|116694038|ref|YP_728249.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113528537|emb|CAJ94884.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a purine-cytosine permease domain
           [Ralstonia eutropha H16]
          Length = 1111

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 118/255 (46%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q  L    +    R +  L    E   +A+  K+ F+  +S+E+R+ L +I+G++ LL
Sbjct: 647 ERQNQLLQKEIDAHRRTDALLQSAKEVAEQANLAKSRFITGMSHEMRAGLNSILGYSQLL 706

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +   +L +   + V  I  +   L +LV+ +L+L+ ++AG ++L    + L DLL+E+
Sbjct: 707 LRTP--ALPAACREDVRTIGRAGEHLSSLVDGLLELSRIEAGKLRLEQDAVALEDLLDEL 764

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +          +       GKL      D +RL QI   +++NA+ F+  G  V L   
Sbjct: 765 VRMFRPLAAVRGLAFHYRVTGKLPAHVHGDAKRLRQIIINLVTNAIKFTEHGD-VSLTVR 823

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 + +V + G  I  +    +F+ F        R G+GLGL+IV    +L GG + 
Sbjct: 824 HQRELAMITVSDTGPGIAAEDQARIFDPFERATPHDDREGIGLGLAIVRLLADLMGGDIR 883

Query: 774 ISSSDEGVTTINCRI 788
           + S+    +  + R+
Sbjct: 884 VRSAPGQGSEFSVRL 898


>gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 709

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 10/259 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q +   ++VT   + ER L E  E   +AD  K+ F+ ++S+E+R+P+  +I  + L+  
Sbjct: 67  QVVGVILDVTKRKKVERDLIEAKEQAEQADRAKSRFLANMSHEIRTPMNAVINLSRLVLQ 126

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L S+Q  YV  +  S   LL ++NDILD + ++AG ++L      L +L+++V  
Sbjct: 127 DE---LTSRQRDYVGKVLRSGENLLAIINDILDFSKIEAGKLELESVPFGLRELIDDVVV 183

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILK 711
            ++   H+  I  +V    +L    V D  RL QI   ++SNA+ F+ +G  +    +LK
Sbjct: 184 PLSPTAHDKAIGFRVELAEELPERLVGDATRLRQILLNLVSNAIKFTEQGEVLLKVQLLK 243

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
              D     F V ++G  I     + +   F        RR  G GLGL+I +  + L G
Sbjct: 244 RQGDQVTIAFKVSDSGIGISPAQQQRLGESFRQADDSINRRFGGTGLGLAITKQLLGLMG 303

Query: 770 GHVSISSSDEGVTTINCRI 788
             + + S+    +     I
Sbjct: 304 SELEVESAPGAGSNFAFTI 322


>gi|323495909|ref|ZP_08100977.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           sinaloensis DSM 21326]
 gi|323319125|gb|EGA72068.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           sinaloensis DSM 21326]
          Length = 1128

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 129/289 (44%), Gaps = 12/289 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ E         +  L      +     + + ++N+ L
Sbjct: 403 INTERKDEIGRLAVSFERMQRSIRE---------KIQLIKQQNEELESNLQLIQKQNDEL 453

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+++K+ F+   S+ELR+PL  ++G  + L +   G + +     ++ I +S   L  
Sbjct: 454 QLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPITADHKYQLDIIISSGQRLAT 513

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LD   +  G + +  S + L+     V +  +  +    +RI      +     A
Sbjct: 514 LVDDLLDYHKMRYGNLDIETSAVDLSGSTRLVLELSSHLIGNKPLRIINQVPDEPVWVCA 573

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+   ++ NA+ ++S+G  +++ A   + +    V + G  IP D    +F   
Sbjct: 574 DPQRLEQVLYNLIGNAIKYTSEG-KIVISATVVDDNIRVQVVDTGQGIPADQLDHIFEPL 632

Query: 743 VSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +         R+G GLGLSI    I L  G + +SS     TT +  +P
Sbjct: 633 IQAGNDASRYRQGAGLGLSISRQLIELMKGSLYVSSQPMVGTTFSFTLP 681


>gi|223936675|ref|ZP_03628585.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223894526|gb|EEF60977.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 759

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 114/680 (16%), Positives = 248/680 (36%), Gaps = 79/680 (11%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANI 220
           + A  R+L       E          L       + L +++ D+ ++  D  G +   N 
Sbjct: 106 APAVRRVLR---EKEERIRRKQAEAALRKSEEQLRALIENVTDYAIYMLDIEGRVASWNA 162

Query: 221 SYKKNTETEGIVFQKAIGESRKLF--KEEIKKRMISSSALEKNFCETVS-----TLEHGN 273
             ++    +G   ++ IG+   +F   E+ + R+  S         T         + G 
Sbjct: 163 GAERM---KGYQAEEVIGKPFSVFFSGEDAESRIPESLLRRSPIEGTTKHQGWCVRKDGT 219

Query: 274 NK--SYKIVRVLNSFGEA----GIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFD 323
               S+ I  V +  G+      +  DV+++    + L  + E    L       + +  
Sbjct: 220 RFCASWSITPVRDGSGKINGFSTVTRDVTEQAKAEEALQKSEERYRLLVEFSPCGVLVH- 278

Query: 324 QNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
               + F N +  ++    DL  +        + +F+           W   ++ I S++
Sbjct: 279 SGGRVIFSNSTAAKMLGAKDLQQMLGR----SIRDFIHPDC-------WAAVEKRIESLH 327

Query: 383 --KSSETHKDTWHLPNGQTLHVIVTSNPRG--------GTIWMFENLTVQVDLETKYNTL 432
             K     ++ W   +G+ + V+V + P              +  +++     E      
Sbjct: 328 AGKIVPFLEEIWVGFDGRPVDVMVGATPLVFEKDFENPVIQVIALDISELKRSEEDLRKS 387

Query: 433 VKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            +     ++ + +  + +   DGR+   N     +       L     +  +   C    
Sbjct: 388 EERFRLAVESVKDYAIYMLDKDGRVTSWNEGAERITG-----LGADEVLSKVVNHCEPD- 441

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNA------------- 536
           N+    +    +  +  + R   +G  +    S     +++  + +A             
Sbjct: 442 NKKAKKEAAKELERAAMEGRIQNEGWCQRKDGSSYYAIWTVTAVKDAADTITGFLKVARD 501

Query: 537 ---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              +          +   E+ + E+   L  A++   +F   VS++LR+PL +I GF D+
Sbjct: 502 VTERKQHEEQVARWNTELEQRVAERTAQLEAANKELEAFSYSVSHDLRAPLRHIDGFVDI 561

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+T+ L  L+ +  Q+++ I+ S+  +  L++D+L  + +    +K+N   + L  L+ +
Sbjct: 562 LQTTALEKLDEESRQHLQTIADSAKQMAKLIDDLLGFSRM--SRVKMNKRQVNLATLVQD 619

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS--SKGSTVILK 711
             + +   M    I   +   G L +   D + L Q+F  ++ NA+ +S   K + V + 
Sbjct: 620 AARHLQGDMKGRAIEWAI---GDLPTVEGDPEMLRQVFMNLIDNALKYSRNQKKARVEIG 676

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           +  +  D +  V++NG          +F  F       +  G G+GL+ V   I+ HGG 
Sbjct: 677 SFPEEDDNVVFVRDNGVGFDMRYADKLFGVFQRLHRAAEFEGTGVGLANVRRIIHRHGGR 736

Query: 772 VSISSSDEGVTTINCRIPSK 791
                      T    +P K
Sbjct: 737 TWAEGEINAGATFYFTLPKK 756


>gi|148975720|ref|ZP_01812551.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145964793|gb|EDK30045.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 856

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 157/397 (39%), Gaps = 34/397 (8%)

Query: 409 RGGTIWMFENL--TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            G  I+ F ++  T++   E + +   +   +  +     + V+   G +   NPA R  
Sbjct: 330 DGSNIFEFHHIGCTLEDTFE-RLSEQNQKFQDLFNFAHSPILVWSEKGDLIQMNPAAR-- 386

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                       +   +A         +    +  A +T  +            + + V 
Sbjct: 387 ----MALFDEDDNYGAVAHEFEHRMLPNIQMVVQGAKLTGIN----------VPIGEKVF 432

Query: 527 EYSIIPLPNAQTML----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +++  +     +        ++T  V AER      E       ++  F+  +S+E+R+
Sbjct: 433 RWNMSAIRVEHGITGVVVQGQDITKLVEAERQADRAREEAEHLANVRADFLAKMSHEIRT 492

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G + LLK S     N +Q   V+ +  S+  LL ++NDILD + ++ G   +  
Sbjct: 493 PLNGILGVSQLLKRSVHSEDNREQ---VDVLCNSAEHLLAVLNDILDFSKIEQGQFNIQK 549

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDF 701
               L +L+N +         + ++   +++          D+ RL QI   +LSNA+ F
Sbjct: 550 KDFRLGELINTLDSIYRPLCEDKSVTFSIVNHLVDDIEINTDQVRLNQIMFNLLSNALKF 609

Query: 702 SSKGST-VILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           + +G   V  +       +    I  VK+ G  I      +VF  FV       R   G 
Sbjct: 610 THQGGISVSFELESIFNTNKASLIVRVKDTGIGIDGSKIDAVFEPFVQAEETTTREYGGT 669

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGL+IV++ +++  G + + S+    +     IP +
Sbjct: 670 GLGLTIVKNLVDMLEGDIQVRSAKAQGSEFIIEIPVE 706


>gi|293395210|ref|ZP_06639496.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582]
 gi|291422387|gb|EFE95630.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582]
          Length = 930

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 112/492 (22%), Positives = 204/492 (41%), Gaps = 55/492 (11%)

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEID--LAFLATNPSNDELLEFLRS------ANKL 365
           +L + +A+ D+N      N+  + L + +   + L   P +     ++ S         L
Sbjct: 218 SLPIGVALLDEN------NQPVLRLADGERYASSLTNYPEDHTYFGYVDSYHDLILKKAL 271

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN---LTVQ 422
           P       +   + SV +  +       L N  +  V+ T        W+FE    L  +
Sbjct: 272 PPSSLSIVYALPVKSVIERFKMLILNAILLNLLSAIVLFT------LAWLFERKMFLPAE 325

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
            D   +     +   + +     G+ +    DG   LSN     L     N L+     R
Sbjct: 326 -DNAFRLEEHEQFNRKIVASAPVGICILRISDGTNILSN----ELAHNYINLLTQEDRDR 380

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                C +  N       F  ++TS ++   +LQ +         + +I           
Sbjct: 381 ITRIICEQQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CV 421

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V+V+  V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    +
Sbjct: 422 LVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---A 478

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L     + V  ++ SS +LL +++DILD + +++  +K+        +++  +  +    
Sbjct: 479 LPEGVDRLVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPL 538

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +  + +    +  +      D  RL Q+ S +L+NA+ F+  G  +IL+         
Sbjct: 539 VVKKRLGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTG-CIILQVTARGSYLE 597

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           FSV++ G  IPE     +F+ F       QR  +G GLGL+I E  IN+  G +++ S  
Sbjct: 598 FSVRDTGVGIPEKEISRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINMMDGDIAVESEP 657

Query: 779 EGVTTINCRIPS 790
              +  + RIP 
Sbjct: 658 GLGSMFSIRIPL 669


>gi|148554082|ref|YP_001261664.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148499272|gb|ABQ67526.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 829

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 163/368 (44%), Gaps = 16/368 (4%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L  +++     Q    D  ++G+ +  P G I+  N A   ++     +L        +
Sbjct: 221 RLAFEHHEAAARQRAIFDSATDGIILINPSGSIETINHAAERMFGYSAEQL--------L 272

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               S   + + G   F   +   D + +  +  L  L+    +   +P+      +   
Sbjct: 273 RRDISTLVDIAPGNGAFLERLGIRDGQLQKTE--LIDLTGRDRQGEPVPVDVVLGTMPLP 330

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +    V A R    + E     D +K+ F+  VS+ELR+PLT+++G   LL++   G L 
Sbjct: 331 DGIHIVAALRDAAGRKEI----DRLKDDFISTVSHELRTPLTSVVGSLTLLRSGAAGQLP 386

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++  +  E    +S  L+ L+NDILD+  +  G M   Y+ I L D++ +   ++     
Sbjct: 387 AEAQRLAEIAETNSQRLIRLINDILDIDQIRKGRMAFEYAVIDLRDVMTKAAHAMQGLAD 446

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +IRI+ +         AD  RL+Q+   +LSNA+ FS + +TV  +      D +  +
Sbjct: 447 RRSIRIETLMPSTPVMACADADRLVQVAGNLLSNAVKFSPEEATVRFELIEGRDDHVIQI 506

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++G  IP +   ++F+RF   +   ++   G GLGL+I    +  HGG +S  +  EG 
Sbjct: 507 TDSGPGIPAEFANNIFHRFARGSQPSRQIIAGTGLGLAISREIVRSHGGEISFENRAEGG 566

Query: 782 TTINCRIP 789
                 IP
Sbjct: 567 ARFAFSIP 574


>gi|331017298|gb|EGH97354.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 1123

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L
Sbjct: 648 ERQTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQIL 707

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++
Sbjct: 708 QRD--TTTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDL 765

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++  A    E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V L+ +
Sbjct: 766 EKMFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGEVV-LRVS 824

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 IF + ++G  I  +  + +F  F          GVGLGL+I      L GG +S
Sbjct: 825 YRRETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALS 884

Query: 774 ISSSDEGVTTINCRI 788
           +SS+    T    R+
Sbjct: 885 VSSTPGEGTHFKVRL 899


>gi|284009349|emb|CBA76532.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase [Arsenophonus nasoniae]
          Length = 952

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/269 (25%), Positives = 136/269 (50%), Gaps = 8/269 (2%)

Query: 526 LEYSIIPLPNAQT-MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           + Y I    N +  +   V+++  V+ E +L    +A  +A++ K+ F+  VS+ELR+PL
Sbjct: 426 ISYVISRYQNKEVAICVLVDISARVQMENSLHNMAQASEQANQAKSMFLATVSHELRTPL 485

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG  +LL++ +   L  +  + +  +  SS++LL ++NDILD + +++  + ++ + 
Sbjct: 486 YGIIGNLELLQSYE---LPIQADRLLTTMDHSSSLLLKIINDILDFSKIESKQLNIDPAP 542

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
               ++ + +  +    + +  + I    D  +   + AD  R+ QI S ILSNA+ F+ 
Sbjct: 543 FNCREVFSFIISNYIPLIGKKGLSIFYYIDPDVPDIINADSVRVQQIISNILSNAIKFTK 602

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
            G  ++L     +      +++ G  IP+++   +F+ F      +    +G GLGL I 
Sbjct: 603 TG-FILLNIFIKDFYIYIEIRDTGIGIPDNILMQLFDPFFQIKVNNESFSQGTGLGLPIC 661

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           E  INL  G + ++S     ++   R+P 
Sbjct: 662 EKLINLMDGDIEVNSQVGIGSSFTVRLPL 690


>gi|271501843|ref|YP_003334869.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
 gi|270345398|gb|ACZ78163.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
          Length = 922

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 135/317 (42%), Gaps = 14/317 (4%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            IRN+  T  R         +   ++   D  +  +      L+    E           
Sbjct: 202 PIRNMVETVDRIRRGQLDSRVEGHMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYD 261

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +   +    E  L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + + 
Sbjct: 262 LRETLEQMEIQNVE--LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTL 316

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L + Q  Y++ I  S+  LLN++ND+LD + ++AG + L      L++ L+EV   +
Sbjct: 317 KTQLTTTQKDYLQTIERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLL 376

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A   HE  + + +     +   FV D  RL QI + +L NA+ F+ +G  + ++  +   
Sbjct: 377 AHTAHEKGLELTLNIQHDVPEQFVGDPLRLQQIITNLLGNAIKFTEQG-NIDIRIEKRKQ 435

Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
           +         +K+ G  I E     +F  F         Q  G GLGL I +  +   GG
Sbjct: 436 ENLQVLLEIQIKDTGIGIAEAQQTQLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGG 495

Query: 771 HVSISSSDEGVTTINCR 787
            +S  S     TT  C 
Sbjct: 496 DISFHSKLNQGTTFWCT 512


>gi|257481808|ref|ZP_05635849.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331009443|gb|EGH89499.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 595

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGDALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  ++++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPETREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E +     K  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  + +   + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|288573468|ref|ZP_06391825.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569209|gb|EFC90766.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 694

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 129/262 (49%), Gaps = 12/262 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           + N++      ++ D +R +   L E    L +A++ K+ F+ +VS+E+R+PL  I+G  
Sbjct: 169 IKNSRLYRMINDLNDELRGKVSRLQESEAQLAEANQAKDRFLANVSHEIRTPLNAILGTA 228

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +++    G   ++  + +E I      LL L+NDILDL+ + AG + L+ +   L +LL
Sbjct: 229 AIVR----GKSPAEMDRALEVIKDEGHALLALINDILDLSKMGAGFLDLDEAPFDLFELL 284

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VI 709
             ++ S  ++     +   +     +  ++  D  RL Q+ S +L NA+ F+S G   + 
Sbjct: 285 EALEGSYRSEAKRKGLDFSLDLSKDIPRWITGDPIRLRQVLSNLLGNAVKFTSSGRVSLT 344

Query: 710 LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           +K+ R +GD     FSV + G  IP ++   +F  F        R   G GLGL+I    
Sbjct: 345 VKSLRSDGDKLTLSFSVFDTGIGIPREVVPRLFKPFSQADGSTSRKYGGTGLGLAISRRI 404

Query: 765 INLHGGHVSISSSDEGVTTINC 786
           +   GG +S+ S     +T + 
Sbjct: 405 VRAMGGDISVESERGRGSTFSL 426


>gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 931

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 12/246 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LN+ Q+ Y+  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTPLNTTQTDYLLTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++ND+LD + ++AG + L      L++ L++V   +A   HE  + + +  
Sbjct: 335 ERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSI 394

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---GDFIFSVKNNGS 728
              +   FV D  R+ QI + +L NA+ F+ +G+  + ++  R           +++ G 
Sbjct: 395 QNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVQLEVQIRDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWF 514

Query: 787 --RIPS 790
              +P 
Sbjct: 515 HITLPL 520


>gi|255531133|ref|YP_003091505.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255344117|gb|ACU03443.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 787

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 116/246 (47%), Gaps = 10/246 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           S R      +      +  + K+ F+  +S+E+R+PL  +IG + LL  +        Q 
Sbjct: 397 SHRVSFEQKKARAEAEQGLKAKSEFLSTMSHEIRTPLNAVIGMSHLLLKN---GPREDQK 453

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + ++ +  S+  LL++VNDILD   ++AG +   +  + +  +   +   + +  H+  I
Sbjct: 454 EQLDVMLFSANNLLSIVNDILDYNKIEAGKVSFEHIEMDIPAIAGNIVSGLQSSAHDKGI 513

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFI--FS 722
            + +  D  L +  + D  R  Q+ + ++ NA+ F++KGS  +  + AA+   D      
Sbjct: 514 ELTLHVDPALKNKLMGDPTRSSQVITNLVHNAIKFTNKGSVEVRLIVAAQTETDITLNIQ 573

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  I +D  K +F+RF        R   G GLGLSI +  + L    +++ S +  
Sbjct: 574 VKDTGIGISKDKQKVIFDRFTQVDSSTSRGFGGTGLGLSICKRILELQNSSLNLISDEGR 633

Query: 781 VTTINC 786
            +T   
Sbjct: 634 GSTFYF 639


>gi|228990587|ref|ZP_04150552.1| hypothetical protein bpmyx0001_13490 [Bacillus pseudomycoides DSM
           12442]
 gi|228996688|ref|ZP_04156325.1| hypothetical protein bmyco0003_12740 [Bacillus mycoides Rock3-17]
 gi|228763007|gb|EEM11917.1| hypothetical protein bmyco0003_12740 [Bacillus mycoides Rock3-17]
 gi|228769113|gb|EEM17711.1| hypothetical protein bpmyx0001_13490 [Bacillus pseudomycoides DSM
           12442]
          Length = 591

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 161/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +  + + NP      +  +                
Sbjct: 249 ALQQEKEQLSSILSSMADGVVTLNQECEVVVINPPAEHFLQVWQ---------EEKELEL 299

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           SR     +  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 300 SRNLP-PELVELFHLVVES--EQQQVIEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 353

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 354 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 402

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+ S + ++  + ++ +       E N+
Sbjct: 403 EFVQIIYDESVRLGRLVNELLDLARMESGHVELHISEVDIHPFVEKIGRKFQGIAKEKNV 462

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R+ V     +     D  R+ Q+ + ++ NA+  ++ G  V L     N   +F V+++G
Sbjct: 463 RLTVDFRNPIEQHSFDPDRMEQVLTNLIDNAIRHTNAGGHVELIIDTKNNGLMFEVQDSG 522

Query: 728 SSIPEDMCKSVFNRFVSNAHR---------GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF               G         +I ++ +  H G VSISS  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKTGGTGLGL------AIAKNIVQGHNGKVSISSVV 576

Query: 779 EGVTTINCRIPSK 791
              T  +  +P +
Sbjct: 577 GEGTIFSVYLPGQ 589


>gi|310796718|gb|EFQ32179.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1990

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 120/247 (48%), Gaps = 19/247 (7%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K+ F+ ++S+E+R+PL  I G    L+ +    LN +Q  Y   I  S+  LL
Sbjct: 1322 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTV---LNEEQRDYTNTIQTSANSLL 1378

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  I +  + ++V
Sbjct: 1379 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWV 1438

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD--------FIFSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F+++G      +  +D             F++ + G    
Sbjct: 1439 KGDKVRIRQVLLNVIGNAIKFTTEGEVFSRCRVYKDGASSNLDNEIVLEFAIIDTGRGFT 1498

Query: 732  EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR-- 787
            ++    +F  F     +   Q  G GLGL I    + LHGG +  S+     +T      
Sbjct: 1499 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGSAVPGKGSTFTFTAK 1558

Query: 788  --IPSKE 792
              +P+KE
Sbjct: 1559 FALPTKE 1565


>gi|289627984|ref|ZP_06460938.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646452|ref|ZP_06477795.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298485210|ref|ZP_07003303.1| Sensory box histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160198|gb|EFI01226.1| Sensory box histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330866577|gb|EGH01286.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 595

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGDALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  ++++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPETREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E +     K  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  + +   + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 785

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 10/249 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+ A  +      +A   K+ F+ ++S+ELR+P+  I+G   LL+ ++   L  KQ  Y
Sbjct: 244 QAKLAAEKARHTAEQASLAKSQFLANMSHELRTPMNAILGMLQLLEGTE---LTDKQRSY 300

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
               ++++  LL+L+NDILD + V+AG M L+      + LL ++   ++  +    I +
Sbjct: 301 THNTASAARSLLSLLNDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILSANVGAKTIEV 360

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG---DFIFSVK 724
                  +  + V D  RL Q+   +  NA+ F+ +G  VI L+    NG      F+V 
Sbjct: 361 LFDVGTDVPNALVGDDMRLQQVLINLGGNAVKFTERGEVVIRLRLKATNGAKAFVEFAVS 420

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  +    +F+ F        RR  G GLGL+I +  + L GG + + S     +
Sbjct: 421 DTGIGIASENQAHIFSGFSQAEASTTRRFGGTGLGLAICQRLVGLMGGTLEVDSVPGEGS 480

Query: 783 TINCRIPSK 791
             +  +P +
Sbjct: 481 NFHFTVPLQ 489


>gi|229589354|ref|YP_002871473.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361220|emb|CAY48084.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 633

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++     +Q
Sbjct: 243 EQQQAMAQLIQTREEAERANNAKSDFLAMMSHELRTPMNGVLGMLQLMETTEM---TEEQ 299

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    S S+  LL ++NDILD + ++   ++L +    L DL+N   Q+      +  
Sbjct: 300 SEYAALASESTEHLLKVINDILDFSRIERAALELEHIPFNLADLINSCAQAFQHSAQQRG 359

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++             D  R+ QI   ++ NA+ F+  GS  V       + D +   
Sbjct: 360 LALQLSIPQGMDALRVQGDPTRIRQILVNLIGNALKFTENGSVSVEPHWQTLDHDLVWFT 419

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V+++G  I  D  + +F+ F         +  G GLGL I  +     GG +   S +
Sbjct: 420 CTVRDSGIGISADRLELMFDAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQSEE 479

Query: 779 EGVTTINCRIPS 790
              +     IP 
Sbjct: 480 SRGSVFTLEIPL 491


>gi|172035804|ref|YP_001802305.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697258|gb|ACB50239.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 678

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 161/401 (40%), Gaps = 23/401 (5%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLS----EGVAVFGPDGRIKLSNPAFR 464
           G  I+ F  +  +++  E +    +  +   +D L     +G  +      + L NP  R
Sbjct: 247 GELIFSFNEMAKRLERYEEQNIEELTAEKAKLDTLVSTIVDGAILLDTHLNLLLVNPTAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD- 523
            ++  E   +     ++ + A  +          +      S + E +    T  L    
Sbjct: 307 RMFVWEGKDVIGENILQLLPAELTTQLQTPLEQMIQQNATESNESELEKNPETTSLQQKI 366

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR------KADEIKNSFVQHVS 577
           S  EY I        ++  +      +    L      ++      + +E K+ F+ +VS
Sbjct: 367 SPGEYRISLSQPTSRIVRVLLTQVFDQHRGTLKGIAMTVQDITREVELNEAKSQFISNVS 426

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL NI  F + L         +++ +++E  +  +  L  LVND+LDL+ +++  
Sbjct: 427 HELRTPLFNIKSFIETLSEFGEDLTETERKEFLETANHETDRLTRLVNDVLDLSRLESSK 486

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
              + + + L+ L+ +  ++      +  + +    +  L   +     LLQ+ + ++ N
Sbjct: 487 -TYHLNGVDLSQLIEQTLRTYQLNAKDKELVLNKEVEPNLPLILGHYDLLLQVMTNLVGN 545

Query: 698 AMDFSSKGSTVILKAAR---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           A+ F+  G  ++++A           D       + + G  I  +   ++F+RF    +R
Sbjct: 546 ALKFTPSGGIIVIRAYHFKTKSKQFNDKSCVRVEISDTGIGIAPEDQAAIFDRFFRVENR 605

Query: 749 GQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                G GLGLSIV++ I+ H   + + S     TT    +
Sbjct: 606 VHTLEGTGLGLSIVKNIIDKHHSQIHLISEVGIGTTFWFDL 646


>gi|126009878|gb|ABN64196.1| RcsC [Pectobacterium carotovorum subsp. carotovorum]
          Length = 951

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 161/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     N L+    +R     
Sbjct: 350 QLEENEQFNRKIVASAPVGICILRISDGTNILSN----ELAHNYLNLLTHEDRLRITRII 405

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +          F  ++TS +   +         +++V             +   ++V+
Sbjct: 406 CEQQSK-------FVDVMTSRNHHLQISFVHSRYRNENV------------AICVLLDVS 446

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL    
Sbjct: 447 ARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPQDA 503

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +    + +  
Sbjct: 504 NRLVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKR 563

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  S   D  RL Q+ S +LSNA+ F+  G  ++ +    +G   F V++
Sbjct: 564 LMLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIVFEVGCRDGYLEFVVRD 622

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I S     + 
Sbjct: 623 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 682

Query: 784 INCRIPS 790
              RIP 
Sbjct: 683 FGVRIPL 689


>gi|116749295|ref|YP_845982.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698359|gb|ABK17547.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 869

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/520 (16%), Positives = 181/520 (34%), Gaps = 43/520 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S+E ++ +       I+ ++       D+       N + +  +      +A     D  
Sbjct: 363 SRETSLLEAQRRLTAIMDSIADGFYTLDREWRFTHINDAALAYFGKTREEVAGRSILDVF 422

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
                 A  + E    +  +       +++        +  G+ + + V   P      +
Sbjct: 423 PGV---AGSVFEAAYRRALETGESQYLEAA-------SVVTGRMIEIFVYPGPE-HLTAL 471

Query: 416 FENLTVQVDLETKYNTLVKVQ---------------------GETIDHLSEGVAVFGPDG 454
           F +++ +  +E +                                +D   + + V   D 
Sbjct: 472 FRDISERKWMEEELRRSRDELERRVLERTAELVNANKQLGEKAALLDLAHDAILVRDADE 531

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           ++   N      +   E+  + G  +R +  T      E     L        +    + 
Sbjct: 532 KVVFWNRGAEETYGWSESE-ALGKPVRELLGTRFPLPWEQIKATLLKENGWEGELVHTAE 590

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G   +++                +    ++T   +AE  L    E L   ++    F  
Sbjct: 591 DGRRVVVNSRWALQRDGSGQPVGILEINRDITGRKKAEDELKAYAERLALINQELEEFAF 650

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             S++L+ PL  I  + DLL+      L+     ++E +  S+  +  L+ND+L  + V 
Sbjct: 651 VASHDLQEPLRKIKTYGDLLQKRCAPCLDDAGLGFLERMLRSADRMRRLLNDLLQYSRVA 710

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           A      +  I L +++ E       +         +I   KL +  AD  ++L++F  +
Sbjct: 711 AKQEP--FKEIQLGEVVREAANVFEQRAGG------LIEIRKLPTIEADESQMLRLFQNL 762

Query: 695 LSNAMDFSSKGS-TVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
           + NA+ F    S  V + A  D+ G     V++NG    +   + +F  F     R +  
Sbjct: 763 IGNALKFCGAASPQVKISAKCDHKGGCEIHVEDNGIGFEQHYAERIFKPFQRLHGRDEYE 822

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G G+GL+I    +  HGG++ + S     +T   R+P ++
Sbjct: 823 GTGMGLAICRKIVERHGGNIRVESEPGKGSTFIIRLPVRQ 862



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/404 (12%), Positives = 114/404 (28%), Gaps = 70/404 (17%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              +   L         + DS+    +  D+       N +        G   ++  G S
Sbjct: 361 LRSRETSLLEAQRRLTAIMDSIADGFYTLDREWRFTHINDA---ALAYFGKTREEVAGRS 417

Query: 241 -RKLFKEEIK----KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
              +F              +    ++     +++  G  +  +I           +  D+
Sbjct: 418 ILDVFPGVAGSVFEAAYRRALETGESQYLEAASVVTG--RMIEIFVYPGPEHLTALFRDI 475

Query: 296 SKEITVNDQLTHTYE-------------------------ILHNLTVAIAIFDQNRYLQF 330
           S+   + ++L  + +                         +L     AI + D +  + F
Sbjct: 476 SERKWMEEELRRSRDELERRVLERTAELVNANKQLGEKAALLDLAHDAILVRDADEKVVF 535

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            NR   E +    +     P    + E L +   LP       W++   ++ K +    +
Sbjct: 536 WNRGAEETYGWSESEALGKP----VRELLGTRFPLP-------WEQIKATLLKENGWEGE 584

Query: 391 TWHLP-NGQTL----HVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
             H   +G+ +       +  +  G   G + +  ++T +   E +     +        
Sbjct: 585 LVHTAEDGRRVVVNSRWALQRDGSGQPVGILEINRDITGRKKAEDELKAYAERLALINQE 644

Query: 443 LSEGVAVFGPD-----GRIKLSNPAFRSLW---------KTEENRLSPGTHIRNIAATCS 488
           L E   V   D      +IK      +               E  L     +R +     
Sbjct: 645 LEEFAFVASHDLQEPLRKIKTYGDLLQKRCAPCLDDAGLGFLERMLRSADRMRRLLNDLL 704

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
           +Y   +   + F  I     +  +      E  +  ++E   +P
Sbjct: 705 QYSRVAAKQEPFKEI--QLGEVVREAANVFEQRAGGLIEIRKLP 746


>gi|296876106|ref|ZP_06900160.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912]
 gi|296432817|gb|EFH18610.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912]
          Length = 450

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 138/382 (36%), Gaps = 30/382 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I + N           + +
Sbjct: 75  INDLSEVIRLTHENLEQETKRLTSILSYMTDGVLATNRRGQIIMVNEMAAKQLNVNPDEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T I ++ +    Y   S   ++    I S D+  + +   +         +++I   
Sbjct: 135 LN-TSILDLLSLGDDYDLRSLITEVPELTIDSQDENGEYISLRVR--------FALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   ++            +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQDKE-----------ERERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +V+     +  ++ +V D+L L+ +D    +L+         +  +
Sbjct: 235 DDGALS--EPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSQLDIELTNFTAFITFI 292

Query: 655 KQSI-----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                     ++       +             D  ++ Q+   IL+NA+ +S  G  + 
Sbjct: 293 LNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKMTQVIDNILNNAIKYSPDGGKIK 352

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +     +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  
Sbjct: 353 VGMRTTDAQLIISISDEGLGIPKKDLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQ 412

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G +   S     +T    +P
Sbjct: 413 HKGFIWAKSEYGKGSTFTIVLP 434


>gi|71733915|ref|YP_272558.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554468|gb|AAZ33679.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|330986816|gb|EGH84919.1| sensory box histidine kinase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 595

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGDALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  ++++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPETREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E +     K  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  + +   + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|88859894|ref|ZP_01134533.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88817888|gb|EAR27704.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 903

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +    LR A+E K+ F+ ++S+E+R+P+T+IIG+ D +    +   N   ++ V+ 
Sbjct: 411 QMLEQMTHELRDANEAKSRFLANMSHEIRTPMTSIIGYADGIILGDIEPRN--HAKAVQV 468

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ +   +L ++NDILD++ ++A  +++ +    L   +  V+  +  ++ +  +  KV+
Sbjct: 469 IAQNGNHVLGIINDILDMSKIEANKLEVEWIETDLFATIANVESILGKQIRDKGLEFKVL 528

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            +  L +  + D  RL QI   + +NAM F+  G+ + L  +  +   I  V+++G  + 
Sbjct: 529 YEFPLPNKIIIDPTRLRQILLNLTNNAMKFTDYGA-ITLIVSFKDEKLIIRVRDSGIGMT 587

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++  + +F  F        R   G GLGL+I ++  +  GG +S+ S     +     +
Sbjct: 588 KEQTQKLFEAFSQADTSTTRKYGGTGLGLNISKNLAHKLGGDISVKSEIGKGSEFIVTL 646


>gi|255530497|ref|YP_003090869.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343481|gb|ACU02807.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 528

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/351 (23%), Positives = 150/351 (42%), Gaps = 29/351 (8%)

Query: 460 NPAFRSLWKTEEN--RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N A R  W+ +     +       +         +     ++    +T+   E K     
Sbjct: 37  NEALRLSWEMDIAIAMIDVQMPEMDGFELVEILKSNPRTKEILIIFVTAISKETK---YA 93

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------------LTEKNEALR 563
           ++ LS   ++Y   PL    T     +    +R +R               L +  E   
Sbjct: 94  VKGLSTGAVDYLYKPLDPYVTAAKVDSFIQFIRNQREVKKKNKELEAYQKELIKAKELAE 153

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
               IK++F+ ++S+E+R+P+  IIG   LLK ++   L  +Q + V  +  SS  LL +
Sbjct: 154 TGKRIKDNFLANMSHEIRTPINGIIGIAQLLKKTE---LTDEQREMVNLLEISSNSLLGV 210

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +ND+LDL+ +++G  K+N +   +  +   V   +     E  + +K+  D +L    +A
Sbjct: 211 INDVLDLSKIESGKFKINRTATDIIKICESVVDLLRIPSIEKKLDLKLALDSELPKMILA 270

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSV 738
           D  RL QI   ++ NA+ F+ +GS    V +   + N     FSV + G  I ++    +
Sbjct: 271 DSLRLNQILMNLIGNAIKFTHQGSVTLKVEILNRKGNNLQLRFSVADTGIGIAKENIDKI 330

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F  F     +      G GLGLSIV++   L GG + + S +   +T +  
Sbjct: 331 FETFEQADEQTTIKFGGTGLGLSIVKNLAKLKGGTLEVISEENIGSTFSFS 381


>gi|163800895|ref|ZP_02194795.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
 gi|159175244|gb|EDP60041.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
          Length = 576

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E   +A++ K+ F+  +S+E+R+PL +++G  D+L+ S+   L  +Q + +  +
Sbjct: 200 QLAKAREEAERANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSR---LTEQQFEVLNQM 256

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL +++DILDL+ +++G   LN     L+D +  V           N+  +   
Sbjct: 257 ECSAELLLAIISDILDLSKIESGSFHLNEKWTNLSDAVTLVIYQQKQLATNKNLSFEYQC 316

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +      +  D  R+ Q+   ++ NA  F+  G  + +     +G  + SV + G  IP+
Sbjct: 317 NLDSNKQYWIDSTRVSQVLFNLIGNASKFTDFGG-INVTVIESDGQLVISVIDTGIGIPK 375

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               ++F  F        RR  G GLGL+I +  + +  G +S+ S +   +    +IP
Sbjct: 376 AKIGNLFTAFHQGDSSITRRFGGTGLGLAITKHLVEMMRGTISVKSEENVGSHFEIKIP 434


>gi|126732976|ref|ZP_01748737.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126706593|gb|EBA05669.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 740

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 119/250 (47%), Gaps = 6/250 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                  +    L    +   +A+ IK++F+ ++S+E+R+P+  II  ++LL+    G+L
Sbjct: 195 YYWVQLKKTAAGLDHARKRAEEAERIKSAFLANMSHEIRTPMNGIIAMSELLEQ---GTL 251

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q      IS+S+  LL ++NDILD + ++AG M ++       +L+ EV    +   
Sbjct: 252 NPEQRSMTSTISSSAVALLAIINDILDFSKIEAGKMLVHAEPFDPINLVEEVATLFSPAA 311

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               + I V S  ++    + D  RL Q    ++ NA+ F++ G+  I     ++G  + 
Sbjct: 312 AAKGVEICVESVLEMPLMVMGDSARLRQCLLNVIGNAVKFTATGNVHIWLNRSEDGQIVV 371

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I ED    +F  F        RR  G GLGL+I    I L GG +S  S  +
Sbjct: 372 KVTDTGVGIAEDKLDHIFEEFSQIDSTHTRRYDGTGLGLAISLRLIRLMGGSLSARSRPD 431

Query: 780 GVTTINCRIP 789
             +    R+P
Sbjct: 432 EGSVFEMRLP 441


>gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 916

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTDLNATQRDHLTTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  +L   R            + + G 
Sbjct: 395 KNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|206578572|ref|YP_002236863.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae 342]
 gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae 342]
          Length = 916

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTDLNATQRDHLTTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  +L   R            + + G 
Sbjct: 395 KNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|298387628|ref|ZP_06997179.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259484|gb|EFI02357.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 641

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 6/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     G+   +Q
Sbjct: 397 DLLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GNTEEEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L  +V  S++    ++ 
Sbjct: 455 QTYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCRQVVASVSVS-RQSG 513

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKN 725
            +   +SD +      D QR+ Q+   ++SNA  F+ KG  T+      +    +FSV +
Sbjct: 514 NQFLFVSDYESFRMTTDIQRMQQVIINLMSNADKFTRKGQITLEFSVNEETEMAVFSVTD 573

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP++  K VF RF       Q  G GLGLSI +  ++   G + I S   G     
Sbjct: 574 TGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGDIWIDSEYTGGARFM 631

Query: 786 CRIPSK 791
              P K
Sbjct: 632 FSHPLK 637


>gi|296112383|ref|YP_003626321.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           RH4]
 gi|295920077|gb|ADG60428.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           RH4]
          Length = 988

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 124/293 (42%), Gaps = 20/293 (6%)

Query: 515 QGTLELLSD------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKA 565
            G   LL D        L  S   L N                E     +    +A    
Sbjct: 258 SGEFALLRDDFTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAIST 317

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K++F+ ++S+ELR+PL +I GF +LL     G L  +Q+ YV+ I  SS  LL LVN
Sbjct: 318 SQAKSAFLANISHELRTPLNSIDGFINLLARK--GELTGEQNLYVQTIKKSSAHLLALVN 375

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADR 684
           D+LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D 
Sbjct: 376 DVLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDS 435

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F 
Sbjct: 436 LRVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFG 495

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSI-----SSSDEGVTTINCRIP 789
                   +  G GLGL I +    L GG +        +      T    +P
Sbjct: 496 QGDLSVTRRYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|300088021|ref|YP_003758543.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527754|gb|ADJ26222.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 638

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/649 (16%), Positives = 219/649 (33%), Gaps = 84/649 (12%)

Query: 198 LFDSLDFLV--WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE-----IKK 250
           + D++   V  W     G         +   +  G   ++ +G   K          I  
Sbjct: 1   MLDNVPDAVILWRYQGPGLSFIITAVNRTACDRFGYSAEEMVGMPDKDLNAPDSYINIGN 60

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
                    +   E       G     ++           +A+ V ++I+   Q+     
Sbjct: 61  ITGLLLEKGQAVYEMTHLSRDGRRIPAEVAGRFVEINGVRMAVSVIRDISERKQMELRSM 120

Query: 311 ILHNLTVA----IAIFDQNRYLQFHNRS---FVELWEIDLAFLATNPSNDELLEFLRSAN 363
            L++  +A    +        + F N S    ++ W +D+  +   P  + L E   + +
Sbjct: 121 RLNSFPLANPNPVLRATPEGEVVFANSSSTPLLKFWNVDIDGILPPPWPNILNEVFVAGH 180

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQ 422
               +L+                         NGQ   + +    +   I ++  ++T +
Sbjct: 181 PDTIELDC------------------------NGQVFSMTMAPASQDRFINIYPLDITER 216

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR--------- 473
             +E +         +  D L E V     D  I   N     ++  +            
Sbjct: 217 KKMELEIRDNRDFLEQLNDSLPETVFNLDSDFVISYVNRQVDKMYGYQPQECLGRSMAFL 276

Query: 474 -------------LSPGTHIRNIAATCSRYYNESDGWDLFAAII-TSFDDERKSLQGTLE 519
                        L   +  R + +    ++   DG +    II T       S    + 
Sbjct: 277 FRNQKEYEHFKDSLKIESGNRQVVSFSDFWHRRRDGSEFPCEIIMTVAPRPDGSAAAVII 336

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFV----------NVTDSVRAERALTEKNEA-------L 562
           +   S  + + + + N Q  L  +           ++  ++AE+ L    E        L
Sbjct: 337 VRDTSERQRAQMEIENYQHHLEDMVLERTRELETEISSRLKAEQELRRLFEREKALSAEL 396

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           +K  E +  F + + +EL++PLT +I  ++ L+       +    ++   I   +  +  
Sbjct: 397 KKQIEERQLFTRGLVHELKTPLTPLITASEYLEQHL---TDKTAREFARNIRTGAHNMEK 453

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            VN++LDLA  + G + +  S   L +L++   + +  +     + +            A
Sbjct: 454 RVNEMLDLAKGEIGTLNVQNSRFDLVELVSLTAEFMKPEADRRGLELVTTLPPDPVEIEA 513

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL Q+ S +L N++ F+ +G  + +            V +NG+ I E     +F  +
Sbjct: 514 DPDRLRQVMSNLLGNSIKFTKRGGRIEIATGSSEHSVFIRVTDNGAGIAEADLPYLFQAY 573

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  + R  G+GLGL++    + LHGG + + S     TT    +P
Sbjct: 574 HRGQTSEKSRMSGLGLGLTLSRMIVELHGGRIDLDSKKGQGTTFTITLP 622



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/341 (11%), Positives = 106/341 (31%), Gaps = 48/341 (14%)

Query: 120 KFHHYIKLSKATEKLRKEGQS-FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
               YI +   T  L ++GQ+ +++   +++   I  E  V+G     R + ++G+   +
Sbjct: 51  APDSYINIGNITGLLLEKGQAVYEMTHLSRDGRRIPAE--VAG-----RFVEINGVRMAV 103

Query: 179 AETTLKCKKLSNHISVFK--VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           +      ++    +   +      +    V      G++++AN S     +   +     
Sbjct: 104 SVIRDISERKQMELRSMRLNSFPLANPNPVLRATPEGEVVFANSSSTPLLKFWNVDIDGI 163

Query: 237 IGES-RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
           +      +  E                 +T+    +G   S  +             +D+
Sbjct: 164 LPPPWPNILNEVFVA----------GHPDTIELDCNGQVFSMTMAPASQDRFINIYPLDI 213

Query: 296 SKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           ++   +  ++    + L      L   +   D +  + + NR   +++            
Sbjct: 214 TERKKMELEIRDNRDFLEQLNDSLPETVFNLDSDFVISYVNRQVDKMYGYQPQECLGRSM 273

Query: 352 NDELLEFLRSANKLPEQLNWKTWKE--NIFSVYKSSETHKDTWH-LPNGQTLH----VIV 404
                           Q  ++ +K+   I S  +   +  D WH   +G        + V
Sbjct: 274 AFLFRN----------QKEYEHFKDSLKIESGNRQVVSFSDFWHRRRDGSEFPCEIIMTV 323

Query: 405 TSNPRG--GTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
              P G    + +  + + +     +    ++     ++ +
Sbjct: 324 APRPDGSAAAVIIVRDTSER----QRAQMEIENYQHHLEDM 360


>gi|70729128|ref|YP_258864.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343427|gb|AAY91033.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 633

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 119/253 (47%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   +A++ K+ F+  +S+ELR+P+  ++G   LL+T+++     +Q
Sbjct: 243 EQHQAMSQLIQTREEAERANKAKSDFLAMMSHELRTPMNGVLGMLQLLETTQM---TQEQ 299

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    S S+  LL ++NDILD + ++   ++L +    L +L+    Q+      +  
Sbjct: 300 SEYAALASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELITSSAQAFQHSALQRG 359

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFIF 721
           + +++      +      D  R+ QI   ++ NA+ F+ +GS + ++    A D+    F
Sbjct: 360 LDLQLRLPPGMESLQVKGDPTRIRQILVNLIGNALKFTEQGS-ITIEPQWQALDHELLWF 418

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V+++G  I     + +F+ F         +  G GLGL I  +     GG +   S 
Sbjct: 419 TCAVRDSGIGISPASLELMFDAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQSE 478

Query: 778 DEGVTTINCRIPS 790
           +   +     IP 
Sbjct: 479 EGRGSVFTLEIPL 491


>gi|172036382|ref|YP_001802883.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697836|gb|ACB50817.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 569

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 119/255 (46%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+          +Q +++E 
Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLILDGMADDA-QEQQEFLEE 364

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILD+A ++AG M L   ++ L +L   V      +    ++  +  
Sbjct: 365 AHKSALHLLNLINDILDIAKIEAGKMDLELGSVELAELFQAVDNFTLPQAQRKHLAFRSK 424

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGD------FI 720
               L   V   + QRLLQ+   ++SNA+ F+ +GS V    I+K   D+          
Sbjct: 425 LPSTLTPIVVYGNYQRLLQVMLNLVSNAIKFTHEGSIVVNAEIVKKKIDHQHQEFPGLVK 484

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  D    +F +FV           G GLGL+I +  I   GG V   S  
Sbjct: 485 VSVTDTGIGVSLDKQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLIQAMGGQVEFYSMG 544

Query: 779 EG-VTTINCRIPSKE 792
           EG  +T+   +P  +
Sbjct: 545 EGLGSTVTFTVPLGQ 559


>gi|90577498|ref|ZP_01233309.1| sensor protein LuxQ [Vibrio angustum S14]
 gi|90440584|gb|EAS65764.1| sensor protein LuxQ [Vibrio angustum S14]
          Length = 576

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 110/235 (46%), Gaps = 7/235 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +    +++    F+  +++ELR+PL  ++G  +LL+ +    L++ Q + +  ++ S  
Sbjct: 204 KKRAEDSEQSTRDFLAMINHELRTPLNGLLGAAELLQDT---PLDNDQQKLLTTLNHSGE 260

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +L  ++ND+LD + ++AG+++L       + L  +++     + HE  +   +     L 
Sbjct: 261 LLRAIINDLLDYSKINAGMLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNIYYSNDLP 320

Query: 679 SF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              + D  R+ QIF  ++SNA+ F+  G  V  K    N    F+VK++G  I       
Sbjct: 321 KIFIGDEDRIKQIFVNLISNAIKFTPAG-FVHAKLWWQNKHLQFTVKDSGCGIDHSDQHK 379

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F  F    +  +R   G GLGL I +      GG + + SS       N  +P 
Sbjct: 380 LFKPFSQVDNTSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVSLPL 434


>gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
 gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
          Length = 951

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/367 (23%), Positives = 160/367 (43%), Gaps = 30/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   +SN     L     + L+    +R +   
Sbjct: 349 QLEENEQFNRKIVASAPVGICILRISDGTNIISN----ELAHNYLSLLTYEDRVRIVRII 404

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +     D       ++T  +   +         +++V             +   ++V+
Sbjct: 405 CEQQSKSLD-------VVTGRNHHLQISFVHSRYRNENV------------AICVLLDVS 445

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             VR E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL S  
Sbjct: 446 ARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPSDA 502

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ V  +  SS +LL +++DILD + +++  +K+        +++N +  +    + +  
Sbjct: 503 NRLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPGEFAPREVINHIVSNYLPLVVKKR 562

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    D  +    + D  RL Q+ S +LSNA+ F+  G  V   A  D+G  +F +++
Sbjct: 563 LVLYCYIDPNVPFRLLGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACCDDGYLVFKMRD 622

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  ++L  G ++I S     + 
Sbjct: 623 TGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSE 682

Query: 784 INCRIPS 790
              RIP 
Sbjct: 683 FGIRIPL 689


>gi|301162819|emb|CBW22366.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis 638R]
          Length = 639

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 124/255 (48%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T     D  R++ AL E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L + 
Sbjct: 390 YLRTKRLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLASG 449

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             GS    Q  Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S
Sbjct: 450 --GSSEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSS 507

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARD 715
           +     E+  R    +         D QRL Q+   +L+NA  F+ K  T+ L  +  ++
Sbjct: 508 VEMSRRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKE 566

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +F+V + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I 
Sbjct: 567 KNRVLFAVADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWID 624

Query: 776 SSDEGVTTINCRIPS 790
              E         P 
Sbjct: 625 PDYEDGARFVVSHPL 639


>gi|229195307|ref|ZP_04322079.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
 gi|228588162|gb|EEK46208.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
          Length = 896

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTADLQV 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   L ++ + K+ F+ ++S+ELR+PL +I+  +++LK +    L+  + +  
Sbjct: 478 TKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+   
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAASMQQNFLHIAAQKNVEFT 597

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           V     +   F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 VEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I ++  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLQ 717

Query: 776 SSDEGVTTINCRIP 789
           S     +     IP
Sbjct: 718 SHVGEGSIFTVYIP 731


>gi|119486822|ref|ZP_01620797.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119456115|gb|EAW37248.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 810

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 164/423 (38%), Gaps = 12/423 (2%)

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVK 434
           E    + +    HK+  +      L +I     +   I  +  ++T     E       +
Sbjct: 390 ETGTEILEYRFLHKNNTYRWIRDELKLIHNHISQSTEIIGYMIDITEHKQTEISLRESEE 449

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 +     + V   + +    N  +         +      + NI    ++Y   +
Sbjct: 450 RFRLMANSAPVLIWVCNSNSQCTFVNQVWLDFTGRTLEQELGRGWLDNIHPDDAQYLLNN 509

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           +          + +   +   G    + +  +         +  + + +++T+  +AE  
Sbjct: 510 NFSKCNHKESFTNEFRLRRWDGEYRWILNQGVPRMTADGNFSGYIGSCIDITERKQAEEL 569

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   N  L +++     F    S++L+ PL  +  F+ LL      +L+ +   Y+ YI 
Sbjct: 570 LFTLNRELLQSNRELEQFAYVASHDLQEPLRIVSLFSQLLARKYQDNLDEETQTYIYYIV 629

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++T +  L+ D+L  + V       N+  +  N +L +  Q++   + + N    +I+ 
Sbjct: 630 DAATRMQQLIKDLLAYSQVGTSKSTANFERVDCNQVLQQALQNLQVAITKQN---AIINS 686

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------ARDNGDFIFSVKNN 726
            +L + +AD Q+L+ ++  ++ NA+ +     +  ++              ++ FSV++N
Sbjct: 687 NQLPTVIADPQQLVILWQNLIGNAIKYCHPEVSPYIEIGIRPNLIDESQTQEWCFSVRDN 746

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I  +  + +F  F    H  +  G G+GL+I +  +  HGG + + S +   +T   
Sbjct: 747 GIGINSEYFERIFKIFQRLHHSQEYPGTGIGLAICQKIVERHGGRIWVKSEENQGSTFYF 806

Query: 787 RIP 789
            +P
Sbjct: 807 TLP 809



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             + G   ++ E       L      F+++ +S   L+W  +      + N  +   T  
Sbjct: 425 TEIIGYMIDITEHKQTEISLRESEERFRLMANSAPVLIWVCNSNSQCTFVNQVWLDFTG- 483

Query: 229 EGIVFQKAIGESRKLFKEEIK---KRMISSSALEKNFC-ETVSTLEHGNNKSY------K 278
             +  +   G    +  ++ +       S    +++F  E       G  +        +
Sbjct: 484 RTLEQELGRGWLDNIHPDDAQYLLNNNFSKCNHKESFTNEFRLRRWDGEYRWILNQGVPR 543

Query: 279 IVRVLNSFGEAGIAIDVSKEITVNDQL-THTYEILHN 314
           +    N  G  G  ID+++     + L T   E+L +
Sbjct: 544 MTADGNFSGYIGSCIDITERKQAEELLFTLNRELLQS 580


>gi|116619668|ref|YP_821824.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116222830|gb|ABJ81539.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 729

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 115/238 (48%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +K + LR+ADE+K+ F+ ++S+E R+PL +I+  T LL     G L  +Q + V +I
Sbjct: 220 ELDDKADHLRRADEMKSRFLSNMSHEFRTPLNSILALTRLLLDRAEGDLTGEQERQVFFI 279

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  L  LVND+LDLA V AG   ++ +   + +L   ++  +   +    + +    
Sbjct: 280 RKSAESLYELVNDLLDLAKVQAGKTTVHLAPFDVKNLFGALRGMLRPLLVNTAVNLVFEE 339

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +   V+D  ++ QI    +SNA+ F+  G   +     D    IFSV + G  I   
Sbjct: 340 PEGISEVVSDEGKISQILRNFISNALKFTDHGEVRVFVRREDADRVIFSVSDTGIGIDPA 399

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               VF  F       QR  +G GLGL +      L GG VS+ SS    +T +  IP
Sbjct: 400 DADRVFEEFTQLESPIQRKVKGTGLGLPLSRKLAELLGGTVSVESSPGVGSTFSLTIP 457



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            RL    S+I  NA ++   G  V   ++       F+  V + G  IP    +S+ +  
Sbjct: 53  TRLATAVSEIARNAYNYGG-GGRVEFSIEGTTVPQLFVIRVADAGRGIP--DLQSILD-- 107

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--IPSK 791
                     G+GLG+S     ++       I S   G  T+     +P +
Sbjct: 108 ---GRYQSETGMGLGISRARRLMD----RFEIESPPGGGVTVTMTRMLPLR 151


>gi|297183277|gb|ADI19415.1| signal transduction histidine kinase [uncultured Pseudomonadales
           bacterium HF0500_12O04]
          Length = 632

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 115/253 (45%), Gaps = 11/253 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +   A   L +  E   +A+  K  F+  +S+ELR+P+  ++G   LL+T+++     +Q
Sbjct: 242 EQQSAIAQLIQAREEAERANRAKTDFLAMMSHELRTPMNGVLGMLQLLETTRM---TEEQ 298

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    S S+  LL ++NDILD + ++   ++L +    L +L++   Q+      +  
Sbjct: 299 AEYAALASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSNCAQAFQHNAAQRG 358

Query: 667 IRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + +++     L     + D  R+ QI   ++ NA+ F+  G   +  +  R +   I   
Sbjct: 359 LHLQLTIPDGLQDLPALGDPTRIRQILVNLIGNALKFTEHGQVSIEPQWQRLDHQLIWFS 418

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V+++G  I  +   S+F  F         +  G GLGL I  +     GG +   S +
Sbjct: 419 CAVRDSGIGISSEKLDSMFTAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLHALSEE 478

Query: 779 EGVTTINCRIPSK 791
              +     IP +
Sbjct: 479 AQGSVFTLEIPLE 491


>gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1467

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G  + +    + D+      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF    +      +G G+GL++ +  I+LH G +   S +         +
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|237727119|ref|ZP_04557600.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1467

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G  + +    + D+      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF    +      +G G+GL++ +  I+LH G +   S +         +
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|229090988|ref|ZP_04222212.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42]
 gi|228692389|gb|EEL46124.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42]
          Length = 444

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 206 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++
Sbjct: 325 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDD 382

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 383 GIGIAKEHLPYIEQSFYQINNHTT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 440

Query: 787 RIPS 790
           ++P 
Sbjct: 441 KLPL 444


>gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
 gi|212662488|gb|EEB23062.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
          Length = 1444

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 911  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 968

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 969  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1028

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G  + +    + D+      V+++G  IP+     +F 
Sbjct: 1029 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLSEIFE 1088

Query: 741  RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF    +      +G G+GL++ +  I+LH G +   S +         +
Sbjct: 1089 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1138


>gi|126732483|ref|ZP_01748282.1| signal transduction histidine kinase [Sagittula stellata E-37]
 gi|126707122|gb|EBA06189.1| signal transduction histidine kinase [Sagittula stellata E-37]
          Length = 736

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 200/521 (38%), Gaps = 34/521 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                      +  + +  ++   A+FD +  L   N  F   +      L+   S D  
Sbjct: 75  EANAQAEAARRNLADAIEAVSEGFALFDADERLVMCNTRFCMDFRDTTRDLSPGLSFDGY 134

Query: 356 LEFL-RSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +  + RSA   LP+    ++W       +++     +    P G+ L V       GGT+
Sbjct: 135 VARISRSAYLVLPDGETPESWSARRIRRHQNRHVMFNVQVRP-GRWLQVSEHRTANGGTV 193

Query: 414 WMFENLTVQVDLETKYNTLVK-----VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            +  ++T  V +E      ++     +   T+DHL++GV +F   GR+   N    SL  
Sbjct: 194 VLQTDVTDLVRIERAERDRLRDKQAVMVRATLDHLNQGVGIFDDQGRLVGWNGKLGSLLT 253

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLE 527
            +  RL  G     +    +     + G D           D R  +   +   + +VL+
Sbjct: 254 LDARRLQIGASFIGLIERLALDVEFTQGIDREGFQRWAMSRDYRAPISFEVTRGARTVLQ 313

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIK 569
                +P+   +++  +VT    A R L E NE L +                   +  K
Sbjct: 314 VFGRGMPDGGFVVSVTDVTSEREAARRLFEMNEVLEQRVMERTLELEDALSAAERANASK 373

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + FV   S++L  PL+    +   L     G+      +  E    S+     +++ +LD
Sbjct: 374 SRFVAAASHDLLQPLSAAKLYISSLADRCQGTAEHSVLEKAESALNSAE---QIIDALLD 430

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ +D+     N  +++++++L  +   ++       + + ++    +    +D   L +
Sbjct: 431 ISKLDSDGTHFNVRSVMMSEILRPLSDEMSVLAERKGLELTIVDCNLI--VESDPTYLRR 488

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           I   +L NA+ ++ +G  V++   R+ G     V + G  I E+   +++  F     + 
Sbjct: 489 IVQNLLGNAIRYTVQG-KVLVGVRRNGGSARIEVWDTGPGIAEEDQNAIYEEFRRLDTKA 547

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               G+GLGL+IVE      G  + + S     +     +P
Sbjct: 548 SSNEGLGLGLAIVERACARLGHPLGLWSEVGRGSCFMVNVP 588



 Score = 38.0 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 89/279 (31%), Gaps = 23/279 (8%)

Query: 53  KKVNETYSFLSEICDQLSKYHSLLTENNCLT-----IVWDGKDETPEIIGQLHQRIDIPQ 107
            +       L++  + +S+  +L   +  L         D +D T ++   L     + +
Sbjct: 78  AQAEAARRNLADAIEAVSEGFALFDADERLVMCNTRFCMDFRDTTRDLSPGLSFDGYVAR 137

Query: 108 -TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL 166
            + +  L   +      +    +   + +     F++         +      +G    L
Sbjct: 138 ISRSAYLVLPDGETPESWSA--RRIRRHQNRHVMFNVQVRPGRWLQVSEHRTANGGTVVL 195

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN------- 219
           +    D +  E AE   + +       + +   D L+  V   D  G ++  N       
Sbjct: 196 QTDVTDLVRIERAE---RDRLRDKQAVMVRATLDHLNQGVGIFDDQGRLVGWNGKLGSLL 252

Query: 220 --ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-TLEHGNNKS 276
              + +       I   + +    + F + I +      A+ +++   +S  +  G    
Sbjct: 253 TLDARRLQIGASFIGLIERLALDVE-FTQGIDREGFQRWAMSRDYRAPISFEVTRGARTV 311

Query: 277 YKIVRVLNSFGEAGIAI-DVSKEITVNDQLTHTYEILHN 314
            ++       G   +++ DV+ E     +L    E+L  
Sbjct: 312 LQVFGRGMPDGGFVVSVTDVTSEREAARRLFEMNEVLEQ 350


>gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
 gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
          Length = 1117

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT--- 556
           +AA   S  D  + ++GT        L  S   +  +      +    +   E+ L    
Sbjct: 374 WAAERASAGDLEQEIKGTERSDEIGRLAISFARMQRSIREKITLIRDQNNELEQNLKVIS 433

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++NE L+ AD++K+ F+   S+ELR+PL  ++G  + L     G +   Q + +E I  S
Sbjct: 434 QQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQKSQRRQLEMIINS 493

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              L NLV+D+LD   +  G + +N   + L   +  V +  +  +    +RI       
Sbjct: 494 GQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQIPND 553

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L   +AD QRL QI   ++ NA+ ++S+G  +IL +          V + G  IP +  +
Sbjct: 554 LPLVLADEQRLEQILYNLVGNAIKYTSEG-KIILSSTVLESQIRIQVVDTGQGIPAEQLE 612

Query: 737 SVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F   +         R+G GLGLSI    I+L GGH+ +SS     TT +  +
Sbjct: 613 HIFEPLIQANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSSQPMVGTTFSFTL 666


>gi|332534411|ref|ZP_08410251.1| sensor protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036145|gb|EGI72620.1| sensor protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 786

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYI 613
           L ++ +   +A  IK  F+ ++S+E+R+P+  I G    L    L   + +Q++ Y+E  
Sbjct: 405 LRKEKQKADEASHIKGQFLANMSHEVRTPINGIKG----LHYLALQQNDWQQARSYIEQA 460

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +  +LL ++ND+LD + ++AG + L    I +  L +E+   +  +    +I++ +  
Sbjct: 461 DGALGVLLRVLNDVLDFSKMEAGKLDLMQEPINVASLADEMLNLLQFEADIKSIKLSLDF 520

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D      +  D  RL Q+   +L+NA+ F+ +G  + LK  +      FS+ + G  I  
Sbjct: 521 DKTSNLVINTDPIRLKQVLLNLLNNAVKFTGEGE-ITLKIWQSKKMTYFSINDTGIGISS 579

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  K +F  F         Q  G GLGLSI    + L GG + + S +   +T    +P 
Sbjct: 580 EAQKQLFKPFAQADSSTSRQYGGTGLGLSICRKLVELMGGAIDLVSYEGKGSTFTFSLPL 639


>gi|327480594|gb|AEA83904.1| two-component sensor [Pseudomonas stutzeri DSM 4166]
          Length = 866

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 117/676 (17%), Positives = 224/676 (33%), Gaps = 77/676 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            ++  +       +    +            +S+       D+   I+  N  +K     
Sbjct: 70  QAMAELKGSNQLLSDARLRAETAHQHLVDAIESISDAFVLFDRDQRIVLFNRRFKSLWTR 129

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFG 287
                        ++ +      +I      K    TV  L +G  +  ++  R     G
Sbjct: 130 TRARINAG-TRLAEVRRMAESTGLIVEEHRGKGDEPTVYRLNNG--RWVQVSERPTREGG 186

Query: 288 EAGIAIDVSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
              +  D+++         E  +  +       + NL+  +A+      L+  NR F+EL
Sbjct: 187 LVILYTDITEVKVSETMRREQALAQKSRLLQRAVDNLSQGVAMVSAEGALELWNRRFLEL 246

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             +  A +  +   +E++         P   + +                     L +G+
Sbjct: 247 CGL--APIEAHRPFEEVMADSELTLLTPNSRDARGRPIRELEQ-----------RLFDGR 293

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            L +     P GG +  F ++T +           +      DH+   +A    D   + 
Sbjct: 294 VLEIRTHPLPTGGFVNTFTDITERYRHAEALRESERWIRLITDHVPALIAYVSADLTYEF 353

Query: 459 SNPAFRSLWKTEENRL--------SPGTHIRNIAATCSR--------------------- 489
           +N  +   ++   + +          G H R +     R                     
Sbjct: 354 TNKVYEEWYRWPSDGMLGQSLREVHSGEHWRQLEPYIDRALSGESVSFEMAERNHAGQQR 413

Query: 490 -----YYNESDGWDLFAAI---ITSFDDERKS---LQGTLELLSDSVLEYSIIPLPNAQT 538
                Y          A I   I    D R++   L    + L   V E +         
Sbjct: 414 YMLRSYVPNRQANGEVAGIFVLIQDITDRRRTAEALHQAYQNLEQRVRERTAELTSLNDQ 473

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +L  ++  +   AE  L E       A+  K  F+  VS++L  PL     FT  L    
Sbjct: 474 LLREID--ERSHAEARLREAKREAELANLSKTKFLAAVSHDLLQPLNAARLFTSALLEQP 531

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S        +  IS S   + NL+  ++D++ +DAG++K + +   +++LL  +    
Sbjct: 532 GASSGG----LIRSISNSLEDVENLLGTLVDISKLDAGVIKPDIAPFAVSELLENLAMEF 587

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   +++  I    L    +D Q L +I   +L+NA+ ++ KG  V+L   R    
Sbjct: 588 RQIAGAEQLQLDFIPCSAL--VRSDIQLLARILRNLLTNAIRYTPKG-RVLLGCRRRRQS 644

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISS 776
               V + G  IP D  + +F  F         Q RG+GLGL+IV+    + G  + +SS
Sbjct: 645 LSIEVWDTGVGIPADKLEEIFQEFKRGEGVRPNQDRGLGLGLAIVDKIARMLGHRIRVSS 704

Query: 777 SDEGVTTINCRIPSKE 792
                +     +P  +
Sbjct: 705 HPGRGSCFAIDVPLAK 720


>gi|114565156|ref|YP_752670.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114336449|gb|ABI73831.1| Hpt sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
           400]
          Length = 782

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 130/264 (49%), Gaps = 13/264 (4%)

Query: 536 AQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            + + T  +  ++  +ER   L +  E  +KA + K+ F+  +S+E+R+PL  I+GF+DL
Sbjct: 241 GRQLETINHELENRVSERTFELQQTLEIAKKASQAKSEFLAVMSHEIRTPLNGIVGFSDL 300

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L + K   LN + S  V+ I+ S+  LL L+N++LD +  DA  M L+  T  L DL+  
Sbjct: 301 LTSFK---LNKEVSNTVQMINESAQTLLVLLNEVLDFSKADANKMDLDIKTFNLPDLVTS 357

Query: 654 VKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              S      +  +  +V+       +++ D  R+ QI +  +SNA+ F+ +G+ + +  
Sbjct: 358 TCHSHKVSAGKKGLDFEVVISPLSHENYLGDAVRVRQIINNFVSNAIKFTRQGA-ISIAV 416

Query: 713 ARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
           +      +    F+VK+ G  I     +S+F  F+       R   G GLGL+I +  + 
Sbjct: 417 SEHMEASDTYITFTVKDTGIGIAASKLESIFTPFMQADSTITREFGGTGLGLAICQQLVV 476

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           L  G   + S+ +  +     IP 
Sbjct: 477 LMNGRYGVESTLDEGSHFWFSIPL 500


>gi|220917584|ref|YP_002492888.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955438|gb|ACL65822.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 761

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 111/634 (17%), Positives = 224/634 (35%), Gaps = 59/634 (9%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGESRKLFKEEIKKRMISS 255
           LFD     +      G I+  N  + ++T    E ++ +  +          +     + 
Sbjct: 16  LFDEAAVGLCLVAPDGTIVRVNAPWLRSTGFTHEQVLGEHIVSLFPGTRDMALAMHARAR 75

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEI 311
           +           T+          +  +   G  G+ I   +  +   +         E+
Sbjct: 76  AGHRVEVPRHAQTVNGRETWWEGSIAPVAMEGGTGLLITAREVRSGPGEQPPGCASCTEV 135

Query: 312 LHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
           +  L       I I      +   N  + E   +     +   S ++ L   R  + LP+
Sbjct: 136 VDRLLACVPEGITIATGPDVVTIANSRYAEERLLGSWNRSVGLSMEQWL--ARVEHYLPD 193

Query: 368 QL------NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIW 414
                   +   W+       +S    +     P+G  + V   + P         G I 
Sbjct: 194 GKTPAAVEDLPLWR--ATRRGESVRDAELVVRRPDGTRMSVTCNAEPVRDAAGDVVGGIV 251

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            + ++T Q   +    T  +      + + + V V  PDG ++L N A+ +    +    
Sbjct: 252 AWRDVTEQRRQQAALRTTEERFRLLAEAMPQIVCVLAPDGAVELVNRAWTTFSGLDVAAT 311

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +     R +     +   E     L        +   ++  GT            + P+ 
Sbjct: 312 ARTGWERVLHPDDVQAARECRYQALKRLEPQDVELRYRAADGTY-----RWFLSRLAPVV 366

Query: 535 NAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               ++ F    +++    RAE  L + N  L +AD  K+ F+  +S+ELR+PL  I   
Sbjct: 367 EGGRVVRFIGAGMDIERRKRAEAELRDANAKLVEADRRKDEFLGMLSHELRNPLAPIRNS 426

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + +L+ +  GS  + ++Q V  I   +  L +LV+D+LD+  +  G ++L  ST+ L ++
Sbjct: 427 SFILRHAAPGSDAASRAQQV--IERQTGHLTHLVDDLLDVTRISRGKIELRRSTVDLREV 484

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +    +     + +  +  +            D  R+ Q+   +L+NA  F+ +G  VI+
Sbjct: 485 VLRAAEDFRLPLDDRGVSFRASVPEAPVRAHVDATRITQVVGNLLTNAAKFTRRGDEVIV 544

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS----------- 759
               + G+    V++ G+ I   +  S+F  FV              L+           
Sbjct: 545 SLTVEEGEAAIRVRDTGAGIDPAILASIFQPFVQGERT---------LARSEGGLGLGLA 595

Query: 760 IVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
           +V     LHGG  S++S           R+P  +
Sbjct: 596 LVRGIAELHGGAASVTSEGKGRGAEFLVRLPLGQ 629



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 17/179 (9%)

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
           +      +      +      G V G     R         ++ E   +   L      F
Sbjct: 223 RRPDGTRMSVTCNAEPVRDAAGDVVGGIVAWR---------DVTEQRRQQAALRTTEERF 273

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           ++L +++  +V      G +   N ++   +  +     +   E      +    R    
Sbjct: 274 RLLAEAMPQIVCVLAPDGAVELVNRAWTTFSGLDVAATARTGWERVLHPDDVQAARECRY 333

Query: 256 SALEKNFCETV---STLEHGNNKSY-----KIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
            AL++   + V        G  + +      +V         G  +D+ +      +L 
Sbjct: 334 QALKRLEPQDVELRYRAADGTYRWFLSRLAPVVEGGRVVRFIGAGMDIERRKRAEAELR 392


>gi|156977333|ref|YP_001448239.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156528927|gb|ABU74012.1| hypothetical protein VIBHAR_06119 [Vibrio harveyi ATCC BAA-1116]
          Length = 985

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 7/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S  
Sbjct: 460 RKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDS---GLNPMQKRYAEIINRSGK 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD + ++AG +++      L+ ++ +  Q +  K  E  +      +  +G
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVG 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
            +   D  R+ Q+ S ++ NA+ F+ +G   + +     D    +F V + G  I +   
Sbjct: 577 RYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKDK 636

Query: 736 KSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K++F+ F        Q  G GLGL+I    I   GG + + S +   +     IP +E
Sbjct: 637 KTLFDAFTQAEGGMNQTGGTGLGLAISRRIIQAMGGCLDVDSEEGHGSRFWFSIPLEE 694


>gi|75909242|ref|YP_323538.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702967|gb|ABA22643.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 585

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 18/256 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    +   +A  +K+ F+ +VS+E+R+PL  +IGF  L+       +  K +Q++  
Sbjct: 316 KELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLILEGMADDVEEK-NQFLSE 374

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S  LLN++NDILD+A ++AG M+L  + I L +L ++V   +  +    N+  ++ 
Sbjct: 375 AHQLSLHLLNIINDILDIAKIEAGKMELVCAPIKLEELFSDVDNFMRPQAEVKNLSFRMQ 434

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----------NGDF 719
                   V   + QRLLQ+   I+ NA+ F+ +G  + + A               G  
Sbjct: 435 LPPTSDEIVVQGNYQRLLQVMLNIVGNAIKFTHEGG-ITVSADVVLKKGKLQEQHFPGMV 493

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              + + G  +  D    +F  F  V  +   Q  G GLGL+I +  +   GG V   S 
Sbjct: 494 RVRIADTGIGVSLDQQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLVETMGGEVHFYSL 553

Query: 778 DEG-VTTINCRIPSKE 792
            EG  +T+   +P  +
Sbjct: 554 GEGLGSTVTFTVPLYQ 569


>gi|332142241|ref|YP_004427979.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552263|gb|AEA98981.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 1070

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 117/244 (47%), Gaps = 9/244 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + L    + LRKA + K+ F+  +S+E+R+PL  IIG T L   S+  + + +Q   
Sbjct: 415 QQRKTLDTLTQDLRKATKAKSDFLARMSHEIRTPLNAIIGLTKL---SQRAAEDKEQQTN 471

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  +S  LL+++NDILD + ++AG + +  +   L+ L+N+  +    +  E +I +
Sbjct: 472 LIQIEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLARAQEKHIEL 531

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG---STVILKAARDNGDFIFSVKN 725
                  +  + + D  R+ Q+ + +LSNA+ F+  G    +V  +   ++    F VK+
Sbjct: 532 IQHISRDVPLNLIGDPLRIQQVLNNLLSNALKFTEDGLISVSVRCEQVSEDIQLEFEVKD 591

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  +       +F  F         +  G GLGL+I +    L GG + + S     + 
Sbjct: 592 SGVGLSSAHQALLFQPFNQGDETISRRYGGTGLGLAICKQLTALMGGEIWVESQLGKGSI 651

Query: 784 INCR 787
            +  
Sbjct: 652 FHFT 655


>gi|21112215|gb|AAM40473.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574704|gb|AAY50114.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 304

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 55  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 114

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           SAS+  L  +V+D+LDLA ++AG + ++     L DL   ++         N   +    
Sbjct: 115 SASTRELSEMVDDLLDLAKIEAGRVTISPGWFDLMDLFAALRGMFRPLTDANRTTLIFED 174

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +    + +    FSV++ G  IP +
Sbjct: 175 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLQGDTHVRFSVQDTGIGIPAE 234

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  ++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 235 LHDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGTVGINSVVGQGSEFFVVLP 292


>gi|52143444|ref|YP_083385.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51976913|gb|AAU18463.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 453

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 215 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 274 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++
Sbjct: 334 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDD 391

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 392 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 449

Query: 787 RIPS 790
           ++P 
Sbjct: 450 KLPL 453


>gi|157371505|ref|YP_001479494.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Serratia proteamaculans 568]
 gi|157323269|gb|ABV42366.1| integral membrane sensor hybrid histidine kinase [Serratia
           proteamaculans 568]
          Length = 957

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     N L+     R     
Sbjct: 354 RLEEHEQFNRKIVASAPVGICILRISDGTNILSN----ELAHNYINLLTHEDRDRITRII 409

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 410 CEQQVN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 450

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    +L    
Sbjct: 451 ARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---ALPQGV 507

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+        +++  +  +    + +  
Sbjct: 508 DRLVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLVVKKR 567

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +      D  RL Q+ S +L+NA+ F+  G  +IL+         FSV++
Sbjct: 568 LGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTG-CIILQVCTRGSYLEFSVRD 626

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPE     +F+ F       QR  +G GLGL+I E  IN+  G +++ S     + 
Sbjct: 627 TGVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSL 686

Query: 784 INCRIPS 790
              RIP 
Sbjct: 687 FTIRIPL 693


>gi|326571860|gb|EGE21865.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC8]
          Length = 988

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 124/293 (42%), Gaps = 20/293 (6%)

Query: 515 QGTLELLSD------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKA 565
            G   LL D        L  S   L N                E     +    +A    
Sbjct: 258 SGEFALLRDDFTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAIST 317

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K++F+ ++S+ELR+PL +I GF +LL     G L  +Q+ YV+ I  SS  LL LVN
Sbjct: 318 SQAKSAFLANISHELRTPLNSIDGFINLLARK--GELTGEQNLYVQTIKKSSAHLLALVN 375

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADR 684
           D+LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D 
Sbjct: 376 DVLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDS 435

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F 
Sbjct: 436 LRVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFG 495

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSI-----SSSDEGVTTINCRIP 789
                   +  G GLGL I +    L GG +        +      T    +P
Sbjct: 496 QGDLSVTRRYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|21230642|ref|NP_636559.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769363|ref|YP_244125.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112226|gb|AAM40483.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574695|gb|AAY50105.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1046

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y 
Sbjct: 348 AQGQLVRNSNELSTASRYKSEFLANMSHELRTPLNSSLILAKLLADNKDHTLTAEQVKYA 407

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L+  T+ ++ ++  ++ +      +  ++++
Sbjct: 408 QAIHSSNNDLLALINDILDLSKIEAGHVELSDDTVAMSSVVQRLRDTFEPLARQKGLQLE 467

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D    +  V D QRL QI   +L+NA+ F+  G   +   +  NG   F V + G  
Sbjct: 468 ISADAAAPTQLVVDNQRLQQILKNLLANAIKFTEHGQVSLAVQSHGNGRVRFVVCDTGIG 527

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 528 IAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLALRMGGSISVDSEPGRGSCFTLE 587

Query: 788 IP 789
           +P
Sbjct: 588 LP 589


>gi|330808999|ref|YP_004353461.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377107|gb|AEA68457.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1239

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 147/390 (37%), Gaps = 38/390 (9%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   + + + L+      +  +  G       G I  S   F                I
Sbjct: 404 ARFAGQARSDALIHNDRGMLATIVAGTVAILLAGAIAWSTSRF----------------I 447

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                  +         DL A I ++   DE   +   + +  ++ L   ++        
Sbjct: 448 AQPIVALASVMRRLAAGDLNAKIASAERGDEIGIMTRAVRVFQENALRIRVLEAEAEAER 507

Query: 540 LTFVNVTDSVRAER----------------ALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                  + + AER                 L +       A++ K+ FV  VS+ELR+P
Sbjct: 508 QQVQASLERMVAERTDALHHQTEVLEAQAIELIQARNQAETANQAKSDFVATVSHELRTP 567

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT I+   + L  S   +  +     V+    ++  L+N VNDILD +  +AG  +L   
Sbjct: 568 LTLILAPLEQL--SAATTPPADWHVQVDRAQRNALRLMNRVNDILDFSKAEAGKFELCPM 625

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + LN  +  + +  A         +    D  LG+   D +   +I   ++SNA+ F+ 
Sbjct: 626 PVDLNKTVGVLAEDAAMVAEGKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTP 685

Query: 704 KGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
            G TV L     D   F F+V+++G  I  D    +F RF    +   R   G G+GL++
Sbjct: 686 AGGTVHLTVTALDGERFEFAVQDSGIGIAPDKLPLLFQRFSQIDNSATRHYSGTGIGLAL 745

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
           V+  + L GG V ++S     +    R+P 
Sbjct: 746 VKDLVELMGGEVGVNSEPGQGSCFFVRLPL 775



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             T+ + +L+++  +  A  +    + +       L     DR R+L I   +++NA   +
Sbjct: 1084 ETVPVAELIDDALRMSAGLLARQEVTVVKDI-ADLPLLPLDRHRMLLILVNLINNA-KQA 1141

Query: 703  SKGST-----VILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
              G       V   A+  D      +V +NG+ I  +    +F    S+    ++ G G 
Sbjct: 1142 LDGVIDRSRCVTFSASLADGAVLRITVADNGNGIAPEHLARIF----SHGFTTRKDGHGF 1197

Query: 757  GLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            GL          GG +++ S       T    IP 
Sbjct: 1198 GLHSCALAAQEMGGSLTVRSDGAGQGATFILDIPL 1232


>gi|326563325|gb|EGE13592.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           46P47B1]
          Length = 988

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 124/293 (42%), Gaps = 20/293 (6%)

Query: 515 QGTLELLSD------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKA 565
            G   LL D        L  S   L N                E     +    +A    
Sbjct: 258 SGEFALLRDDFTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAIST 317

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K++F+ ++S+ELR+PL +I GF +LL     G L  +Q+ YV+ I  SS  LL LVN
Sbjct: 318 SQAKSAFLANISHELRTPLNSIDGFINLLARK--GELTGEQNLYVQTIKKSSAHLLALVN 375

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADR 684
           D+LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D 
Sbjct: 376 DVLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDS 435

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F 
Sbjct: 436 LRVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFG 495

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSI-----SSSDEGVTTINCRIP 789
                   +  G GLGL I +    L GG +        +      T    +P
Sbjct: 496 QGDLSVTRRYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|323701175|ref|ZP_08112850.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533777|gb|EGB23641.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 459

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 4/246 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R    L EK + + + D ++   V  VS+ELR+PLT I GF + L    + S   ++  
Sbjct: 215 NRMSAQLKEKIDDIERLDRLRQELVSDVSHELRTPLTVIQGFAEALHDGIVKS-KEQEKF 273

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+  I   +  L +LVNDIL L +++ G M+     +VLN L+N   + +          
Sbjct: 274 YLHNIMDEAGRLKDLVNDILKLRSMEVGHME-EMEFVVLNKLVNITVERMKQIASAKKTI 332

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +K I+  +  +   +  RL Q+ + ++ NA+  S  G  V ++     G    +VK+NG 
Sbjct: 333 VKTITPPEAITVFGNIDRLKQVLTNLVDNAISHSYAGGMVAVELGLREGFAFIAVKDNGP 392

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGV--GLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP++  ++++ RF        RRG   GLGLSIV   + +HGG V++ S      T   
Sbjct: 393 GIPQEELENIWERFYKVDKSRSRRGTGSGLGLSIVRKIVEVHGGKVTVESELGKGATFTV 452

Query: 787 RIPSKE 792
            +P  E
Sbjct: 453 FLPLSE 458


>gi|300248807|gb|ADJ95232.1| ExpS [Erwinia chrysanthemi]
          Length = 922

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 135/317 (42%), Gaps = 14/317 (4%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            IRN+  T  R         +   ++   D  +  +      L+    E           
Sbjct: 202 PIRNMVETVDRIRRGQLDSRVEGHMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYD 261

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +   +    E  L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + + 
Sbjct: 262 LRETLEQMEIQNVE--LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTL 316

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L + Q  Y++ I  S+  LLN++ND+LD + ++AG + L      L++ L+EV   +
Sbjct: 317 KTQLTTTQKDYLQTIERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLL 376

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A   HE  + + +     +   FV D  RL QI + +L NA+ F+ +G  + ++  +   
Sbjct: 377 AHTAHEKGLELTLNIQHDVPEQFVGDPLRLQQIITNLLGNAIKFTEQG-NIDIRIEKRKQ 435

Query: 718 D-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
           +         +K+ G  I E     +F  F         Q  G GLGL I +  +   GG
Sbjct: 436 ENLRVLLEIQIKDTGIGIAEAQQTQLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGG 495

Query: 771 HVSISSSDEGVTTINCR 787
            +S  S     TT  C 
Sbjct: 496 DISFHSKLNQGTTFWCT 512


>gi|91224277|ref|ZP_01259539.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01]
 gi|91190619|gb|EAS76886.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01]
          Length = 566

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 8/245 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ER +    +   ++++    FV  +++ELR+PL  ++G  +LL  ++   L  +Q QY+
Sbjct: 188 LEREVE-LRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQ---LEEEQRQYL 243

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             ++ S  +L  ++ND+LD + ++AG+M++ +      +L   +    A K  E  I   
Sbjct: 244 SNLTQSGDLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFS 303

Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +     +  F V D +R+ QI   ++ NA+ F+  G  V L+    NG   F V++ G  
Sbjct: 304 IDKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGGVV-LRVEWLNGTAYFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPIKAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKVA 422

Query: 788 IPSKE 792
           IP +E
Sbjct: 423 IPLEE 427


>gi|326561891|gb|EGE12226.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           7169]
 gi|326563438|gb|EGE13703.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           12P80B1]
 gi|326568888|gb|EGE18957.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC1]
 gi|326569188|gb|EGE19249.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC7]
 gi|326578011|gb|EGE27875.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           O35E]
          Length = 988

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 124/293 (42%), Gaps = 20/293 (6%)

Query: 515 QGTLELLSD------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKA 565
            G   LL D        L  S   L N                E     +    +A    
Sbjct: 258 SGEFALLRDDFTRAVRRLHASFTELKNHADETEHDLQQAFDEMEMQNISIRNARDAAIST 317

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K++F+ ++S+ELR+PL +I GF +LL     G L  +Q+ YV+ I  SS  LL LVN
Sbjct: 318 SQAKSAFLANISHELRTPLNSIDGFINLLARK--GELTGEQNLYVQTIKKSSAHLLALVN 375

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADR 684
           D+LD + ++AG + L+     L D + +V   ++    E  +R+ V+  D      + D 
Sbjct: 376 DVLDFSKIEAGKLILDSHDFDLYDAVYDVVDMLSPAALEKRLRLAVLFYDDVPTRIIGDS 435

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            R+ QI + ++ NA+ F+  GS V+ +  A   G     V++ G  I E   + +F  F 
Sbjct: 436 LRVKQILTNLVGNAIKFTDMGSVVVRVSLAEKTGYLCIEVEDTGKGISESDKEQLFQSFG 495

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSI-----SSSDEGVTTINCRIP 789
                   +  G GLGL I +    L GG +        +      T    +P
Sbjct: 496 QGDLSVTRRYGGTGLGLVISKQLTQLMGGSIGFIDNRSENIANAGATFWFEMP 548


>gi|269966811|ref|ZP_06180884.1| sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|269828478|gb|EEZ82739.1| sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 1169

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 165/414 (39%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 622  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 681

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 682  RYLELFEFPPGLIQVGRPIADVIRHNAEQGLCGPGDPDDHVRRRVYHLEQGTRHTSSRV- 740

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI----------- 568
                 V+E    P+P    +++F ++T    AE+AL + NE L +   +           
Sbjct: 741  RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANETLEERVRLRTRELEQLNKQ 800

Query: 569  --------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                          K+ F+  VS++L  PL     F   L      S   K S ++E   
Sbjct: 801  LVEATQRSDLESKSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDSEAKKLSAHIESAL 860

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G +++N     LND+L+ +    +    +  I   +I  
Sbjct: 861  EAAE---DLIGDLLDISRLESGKLEVNVHGFALNDVLSNLNAEFSALAKQQGIEFTMI-- 915

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  V L   R  G     V +NG  I E+ 
Sbjct: 916  PSSLMVKSDPKLLRRVVQNFLTNAFRYNPNG-KVALGVRRVKGRVRIDVWDNGVGIEEEK 974

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 975  QQEIFEEFNRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWVGKGSVFSITL 1028



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 642 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 701

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             +            +    H  +   P+G+ + V     P GG +
Sbjct: 702 DVIRHNAEQGLCG-PGDPDDHVRRRVYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 760

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 761 MSFTDITVFRDAEQALKDANETLEE 785


>gi|254760065|ref|ZP_05212089.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
          Length = 453

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 215 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 274 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++
Sbjct: 334 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHENGKVHIEATKNEGQAVIKVKDD 391

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 392 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 449

Query: 787 RIPS 790
           ++P 
Sbjct: 450 KLPL 453


>gi|86147895|ref|ZP_01066200.1| Signal transduction histidine kinase [Vibrio sp. MED222]
 gi|85834322|gb|EAQ52475.1| Signal transduction histidine kinase [Vibrio sp. MED222]
          Length = 1057

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 174/414 (42%), Gaps = 34/414 (8%)

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 510 LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVIDKQMRLVAWNQ 569

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            +  L++     +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 570 RYLELFEFPAGLIQVGRPISDVIRHNAEQGLCGRGDPEDHVRRRVYHLEQGTRHTSSRI- 628

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL----------------- 562
                V+E    P+P+   +++F ++T   +AE+AL + NE+L                 
Sbjct: 629 RPDGRVIEVQGNPMPSGGFVMSFTDITVFRQAEQALKDANESLESRVHERTQELEKLNHR 688

Query: 563 --------RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                    +  + K+ F+  VS++L  PL     F   L          + S ++E   
Sbjct: 689 LVKATQISDQESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEQEEKQLSSHIESAL 748

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++    +L+ D+LD++ +++G ++ N   I ++D+L  +    +    +  I+ ++I  
Sbjct: 749 GAAE---DLIGDLLDISRLESGKLETNIHAIAVHDVLTNLNAEFSALATQQKIQFQMI-- 803

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  +D + L ++    L+NA  ++ +G  V+L A R N      V +NG+ I ED 
Sbjct: 804 PSSLFIHSDPKLLRRVIQNFLTNAFRYNPEG-KVVLGARRVNDQVRIDVWDNGTGIDEDK 862

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F   +     +G+GLGL+I +   ++ G  +S+ S     +  +  +
Sbjct: 863 QQEIFEEFTRGSQVRADQGLGLGLAISKGIAHVLGHQISMRSWPGEGSVFSITL 916



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 530 VDEASELYDFSRGLLQGAIEHIGQGIAVIDKQMRLVAWNQRYLELFEFPAGLIQVGRPIS 589

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++                  +  ++   +    H  +   P+G+ + V     P GG +
Sbjct: 590 DVIRHNAEQGLCGRGDPEDHVRRRVY-HLEQGTRHTSSRIRPDGRVIEVQGNPMPSGGFV 648

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV    E       +    
Sbjct: 649 MSFTDITVFRQAEQALKDANESLES 673


>gi|319400834|gb|EFV89053.1| sensor protein srrB [Staphylococcus epidermidis FRI909]
          Length = 586

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 167/422 (39%), Gaps = 45/422 (10%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
            I    +  +T        +   +  + T +  G     F N+ V++    K  +  K  
Sbjct: 197 RITKPLRQLKTQAQKVSEGDYSQISTVATKDEIGDLSRAFNNMNVEIQEHIKAISSSKNI 256

Query: 437 GETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
            +T+ + + EGV        I LSN     + +          HI +             
Sbjct: 257 RDTLLNSMVEGVLGINNQREIILSNKMADDIMR----------HIDDF------------ 294

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--- 552
                     S +   + ++ T E   +  LE  I    N +  +   +  D ++     
Sbjct: 295 ----------SKESIEQQIEATFESQENEYLELEI----NTRYYVFISSYIDRIQTNGRS 340

Query: 553 --RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               +          D++K  F+ +VS+ELR+P++ + G+T+ +    +   + +    +
Sbjct: 341 GIVMVIRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPD-EIRDSL 399

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +   S  L  LVN++L++A +DA  + +      +  LL++++     +  E  + + 
Sbjct: 400 AIVLDESKRLNRLVNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMT 459

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             S+ +   +  D  R+ Q+ + ++ NA  ++  G ++ +    D+   I ++ + G+ I
Sbjct: 460 FDSNNEEQLWNYDMDRMDQVLTNLIDNATRYTQAGDSIKISIDEDSDFNILTITDTGTGI 519

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  K VF+RF       +R   G GLGL I +  I  HGG + + S     T+   R+
Sbjct: 520 APEHLKQVFDRFYKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRL 579

Query: 789 PS 790
           P 
Sbjct: 580 PK 581


>gi|332707304|ref|ZP_08427357.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354038|gb|EGJ33525.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 876

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 17/239 (7%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K+ F+ ++S+ELR+PL  ++G+  +L+      + ++Q   +  I      LL+L
Sbjct: 401 QANHAKSQFLANMSHELRTPLNGVLGYAQILQRDP--QITAQQKDQINLIYQCGNYLLHL 458

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682
           +NDILDL+ ++A  M+L    + L   L EV +    K  +  I    +    L    +A
Sbjct: 459 INDILDLSKIEARKMELFPREVHLPSFLMEVVEMCRVKAQQKEIAFIYLPSSHLPDGILA 518

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSI 730
           D +RL Q+   +L NA+ F+  G  V  K    +                F +K+ G  +
Sbjct: 519 DAKRLRQVLINLLGNAIKFTDHGG-VTFKVEVISKHPRLPTLQSPLVRLRFIIKDTGIGM 577

Query: 731 PEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  + +F  F        R  G GLGL+I ++ I L G  +++ S+    +  +  +
Sbjct: 578 TPEQLEKIFLPFEQVGDVDHREQGTGLGLAISQTIIKLMGSAINVESTYGKGSMFSIDL 636


>gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
 gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
          Length = 1129

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 12/290 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ +         +  L      +  +  + + ++N+ L
Sbjct: 403 INTERKDEIGRLAISFERMQRSIRD---------KIQLIKTQNAELEKNLQLIQKQNDEL 453

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + AD++K+ F+   S+ELR+PL  +IG  + L +   G L S Q   ++ I  S   L  
Sbjct: 454 QLADKLKDEFLATTSHELRTPLHGMIGIAETLISGANGPLPSNQRYQLDIIIKSGQRLAT 513

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LD   +  G + +  S + L      V +     +    +RI       +    A
Sbjct: 514 LVDDLLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVSNDVAPVSA 573

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+   ++ NA+ ++++G  +++ A   +      V + G  IP +  + +F   
Sbjct: 574 DPQRLEQVLYNLIGNAIKYTTEG-KIVISANVVDDKVRVQVVDTGQGIPAEQLEHIFEPL 632

Query: 743 VSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +         R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 633 IQAGRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 682


>gi|294653541|ref|NP_714785.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293630747|gb|AAN51800.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 841

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 11/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +  +    A+++K+ F+  +S+E+R+PL  IIG   L++  K   L+  Q      
Sbjct: 455 RELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIG---LIEQFKSTPLDESQQHIRNL 511

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL ++NDILD + ++   + L        + + E       +  +  + + V 
Sbjct: 512 IQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKGLVLSVD 571

Query: 673 SDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNG 727
                +   V D++R+ Q+ S ++SNA+ F+  G  + ++A  +      ++   V ++G
Sbjct: 572 YSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSG-KIQIRAFSEKIETKIEYKIQVIDSG 630

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +    +F +F         +  G GLGL+I +  + L  G + +S +    +T  
Sbjct: 631 IGIPREKIDLLFQKFFQLDSSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFE 690

Query: 786 CR 787
             
Sbjct: 691 FT 692


>gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
 gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
          Length = 916

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT L   +    LN+ Q  ++  I
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRL---TLKTDLNATQRDHLTTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L     +L   L+EV   +A   H+  + + +  
Sbjct: 335 ERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
              +  + + D  RL QI + ++ NA+ F+  G+  +L   R            + + G 
Sbjct: 395 KNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IPE     +F  F        RR  G GLGL I +  +   GG +S  S     +T   
Sbjct: 455 GIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|163801626|ref|ZP_02195524.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4]
 gi|159174543|gb|EDP59345.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4]
          Length = 986

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 9/247 (3%)

Query: 552 ERALTEKN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           E AL      +   +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y
Sbjct: 451 EEALNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDS---GLNPIQKRY 507

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I+ S   LL ++ND+LD + ++AG +++      L+ ++ +  Q +  K  E  +  
Sbjct: 508 AEIINRSGKTLLAILNDVLDYSKIEAGHLEIRCLGFDLHQMVEDTFQLMNGKAQEKKLLF 567

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNN 726
               +  +G +   D  R+ Q+ S ++ NA+ F+ +G   + +     D    +F V + 
Sbjct: 568 SYHIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEVDIYVSLNPEDESQVLFEVTDT 627

Query: 727 GSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  I +   K++F+ F        Q  G GLGL+I    +   GG +++ S +   + + 
Sbjct: 628 GIGIAKKDQKTLFDAFTQAESGMHQTGGTGLGLAISRRIVQAMGGELNVDSDEGQGSRLW 687

Query: 786 CRIPSKE 792
             IP +E
Sbjct: 688 FSIPLEE 694


>gi|160937186|ref|ZP_02084548.1| hypothetical protein CLOBOL_02076 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439750|gb|EDP17499.1| hypothetical protein CLOBOL_02076 [Clostridium bolteae ATCC
           BAA-613]
          Length = 837

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 151/389 (38%), Gaps = 33/389 (8%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           + D E     + +   + ID      A+F  DG       AF +  K        G   +
Sbjct: 321 RRDYERYVQNINEAIAQNIDT-----AIFIVDGHTGHVEYAFENAEKIL------GIKPQ 369

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE---LLSDSVLEYSIIP---LPN 535
           N+   C R       ++   +++    DE+      +    L     ++ + +P   L  
Sbjct: 370 NLGEDCGR--CSGSFYETLCSVLKERIDEKTVKTIPVYNDLLSRQMWIQIAALPVKLLGE 427

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            + +    +VT   +    L     A   A+  K+ F+ ++S+++R+P+  I+G T L  
Sbjct: 428 LKYIFAVTDVTHDRQIRENLNAAVAAAEHANASKSVFLSNMSHDIRTPMNAIVGMTKL-- 485

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    K    +  I  SS  LL L+ND+LD++ +++G + L   +  L +L+    
Sbjct: 486 AEIHIEDREKVKDCLYKIGISSKHLLELINDVLDMSKIESGKLVLTSESFSLTELIQRNI 545

Query: 656 QSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +  +    N      + D +    + D  R  Q+   +LSNA  F+ +  T+ L    
Sbjct: 546 AIVNPQYQAKNQVFVTETKDIRHEYLLGDSLRFNQVLLNLLSNAGKFTPENGTITLTVKE 605

Query: 715 DNGD------FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFIN 766
                     +  +V + G  I  +    +F  F    + H+ Q  G GLGL I ++ I 
Sbjct: 606 LPQKHSGHAVYRIAVADTGIGISPEFLPKLFLPFERERSRHQNQAEGTGLGLVISKNIIA 665

Query: 767 LHGGHVSISSSDEGVTTIN--CRIP-SKE 792
             GG + + S     +       +P SKE
Sbjct: 666 AMGGQIYVESRLGEGSVFTVEVELPLSKE 694


>gi|158337403|ref|YP_001518578.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158307644|gb|ABW29261.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 790

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 11/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +    A++ K+ F+ ++S+ELR+PL  I+GF+ LL+      +   Q + ++ I
Sbjct: 326 QLQRTADLAAAANQAKSEFLSNMSHELRTPLNAILGFSQLLQQDP--QIPPHQQKQLDII 383

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + S T LL L+NDIL+++ ++AG   L  S I L +LL+ VK  +  K     +  + + 
Sbjct: 384 NQSGTHLLALINDILEMSKIEAGFSTLKQSPIELQELLDSVKAMMELKATAKQLGFEFVY 443

Query: 674 DGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD------FIFSVKN 725
              L  F+  D  ++ QI   +LSNA+ F+ KG   + + A     D        F+VK+
Sbjct: 444 SPALPQFIEVDAGKVRQILMNLLSNAIKFTQKGYVSLTVDAIYPASDSSGLMQLRFAVKD 503

Query: 726 NGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I  +  + +F  FV   + R  + G GLGL++   F  L  G +++ S  +  +T 
Sbjct: 504 TGLGIAPEEIEQLFTPFVQTASGRITQMGTGLGLALSRKFAQLMKGDITVDSVVDQGSTF 563

Query: 785 NCRI 788
            C I
Sbjct: 564 TCWI 567


>gi|153004892|ref|YP_001379217.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028465|gb|ABS26233.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 927

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 119/242 (49%), Gaps = 4/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L   N  L++ D +K+ F+  V++ELR+PLT+I  F+++L+      + +++ +++
Sbjct: 667 ASAELRAANAQLQELDRMKDEFMSSVTHELRTPLTSIRAFSEILRDDPKAPI-AERVRFL 725

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I   S  L  L++ +LD+A +++G  + + + + + + + +  ++ +    ++ + + 
Sbjct: 726 AIIVKESERLTRLIDQLLDMAKIESGNAEWHAAELDVREAIQDSVEATSQLFRDSGVELA 785

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V          ADR RL+Q+   +LSNA+ F  +G  V ++ A         V+++G  I
Sbjct: 786 VALQPA-PRVRADRDRLVQVIMNLLSNAVKFCPRGGRVEVRLAPAPEGVRVDVQDDGPGI 844

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  +F +F   +    G+ RG GLGL I    +   GG + + S      T +  +
Sbjct: 845 SPADQDIIFEKFRQVSDTLTGKPRGTGLGLPISRRIVEHFGGRLWVESELGRGATFSFVL 904

Query: 789 PS 790
           P 
Sbjct: 905 PL 906


>gi|159900753|ref|YP_001547000.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893792|gb|ABX06872.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1064

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/483 (20%), Positives = 189/483 (39%), Gaps = 48/483 (9%)

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             VEL+ + +     N   +E+ E L               ++    +  ++    +   
Sbjct: 339 PLVELFNVPVEQRHPNYLTNEVREHLEPFTLYSYIAVPIKIQDEAVGLISAASDSPERLF 398

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
             + QTL V   ++         EN+ +   L+ + N L      + D L + V  +   
Sbjct: 399 DHD-QTLFVRQVAD---RLAAWLENIQLFYLLKQQANEL----QTSFDSLDDIVVSYDSR 450

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G     N A    +            +   A      ++E       A   T+  D   S
Sbjct: 451 GHQTRINEAGTQFFAGRHFDFLSNNLVWRTAKGNVLGFDEHPIQQALAG--TTVRDVEVS 508

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L  +  +    + E S+ PL +A   +  + +     + R          + D +K   V
Sbjct: 509 LSRSDGVPI--IHEVSVSPLRSADGSIEGIVLVARDLSARK---------ELDRLKEELV 557

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PLT I+G+++LL   +   L    +  +E I      LL+LVND+LD+A +
Sbjct: 558 ANMSHELRTPLTAILGYSELLLKRRTEVLTPWHTTKIEGIRTGGQRLLSLVNDLLDIAKL 617

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           DAG ++L   T ++N LL E    +   + E    + +     +   + D +R+ Q  + 
Sbjct: 618 DAGRIELQRQTTIINSLLQEQVAILQPMLREKQQTLTLQLGQHIPLLMIDPERIGQAVTN 677

Query: 694 ILSNAMDFSSKGSTVILKAARDN------------------------GDFIFSVKNNGSS 729
           +LSNA+ F+ +  T+ L +   N                           +  V ++G  
Sbjct: 678 LLSNAIKFTPEQGTITLASTALNIDEHGQIDWLDQVLATEVPPMLAGQYVLIQVSDSGVG 737

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINC 786
           +P +    +++RF         +  G GLGLSIV+  + LHGG    +S+ +   ++   
Sbjct: 738 VPAEALVKLWDRFYQVEGGSTRRFGGTGLGLSIVQQLVELHGGRTWATSAGENQGSSFTI 797

Query: 787 RIP 789
            +P
Sbjct: 798 MLP 800


>gi|255007853|ref|ZP_05279979.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313145560|ref|ZP_07807753.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134327|gb|EFR51687.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 631

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 122/243 (50%), Gaps = 7/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + L E      +A+++K++F+ ++S+E+R+PL  I+GF++LL          +  +Y
Sbjct: 392 KTHQRLEEARLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSQ---VEDKEEMKEY 448

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  ++ +LL L++DILD++ +++G+   + +   +N +++E++Q    ++    + +
Sbjct: 449 ADIIETNTDLLLQLISDILDMSKIESGMYDFHITRADVNQMMSEIEQVGKLRIKSEELVL 508

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGS 728
                        D+ RL Q+   +L+NA+ F+  G  + +    +D     F V + G 
Sbjct: 509 TFDEQLPQCILYTDKNRLTQVIINLLTNAIKFT-SGGEIRMGYRLKDAATLYFYVSDTGC 567

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  + C+ VF RFV      Q  G GLGLSI    I   GG + ++S     +     +
Sbjct: 568 GMSTEQCEHVFERFVKYNPFIQ--GTGLGLSISRMIIEKLGGEIGVTSEVGKGSLFWFTL 625

Query: 789 PSK 791
           P +
Sbjct: 626 PYR 628


>gi|74317286|ref|YP_315026.1| Hpt sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC
           25259]
 gi|74056781|gb|AAZ97221.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 781

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 13/252 (5%)

Query: 547 DSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              R E  +  +  AL+ A+   + K+ F+  +S+E+R+P+  ++G  +LL  S   SL+
Sbjct: 240 HRARLEDQVAHRTVALKAAEAASQAKSDFLATMSHEIRTPMNGVLGMNELLLGS---SLD 296

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q  + E +  S   LL ++NDILD + +++G + L      L +L+++  +  A +  
Sbjct: 297 PQQRMWAESVQHSGQHLLGVINDILDFSKIESGHLSLETVDFDLVELIDDTMRMFAHQAE 356

Query: 664 ENNIRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI- 720
              + +         +     D  RL QI + ++ NA+ F+  G+ V+     DNGD   
Sbjct: 357 HKGLELACRITPSQRTIGLRGDPFRLRQIVANLVGNAIKFTEHGAVVVHATVNDNGDAAA 416

Query: 721 --FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V++ G  I  +    +F  F        RR  G GLGL+I     NL G  ++++S
Sbjct: 417 VGLCVEDTGIGIAPEAQARIFEHFSQADGSTTRRFGGTGLGLAICRRLANLMGSDITVAS 476

Query: 777 SDEGVTTINCRI 788
           +          +
Sbjct: 477 APGQGARFCLDL 488


>gi|326794044|ref|YP_004311864.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326544808|gb|ADZ90028.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 912

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 11/261 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+  +      +++  +AL +       A + K  F+  +S+E+R+P+  IIG   L++ 
Sbjct: 200 QSKRSDDKHLQAIQLTKALEQNIIKAEAATKAKTEFLATMSHEIRTPMNGIIGLGHLIQN 259

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + L  +   QS YV  +  S+  LL+++NDILD + +++G +++      L+ LL +V  
Sbjct: 260 TVLDQI---QSDYVRKMLRSADSLLSIINDILDFSKIESGSIEIEQRDFHLDSLLEQVFV 316

Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
              ++  E  +   +  D +L  +   D  RL QI   ++SNA+ F+  G+ V L  A+ 
Sbjct: 317 LNESRAIEKGLTFTIDRDFRLQDALEGDSFRLNQILVNLVSNAIKFTEHGA-VSLSVAQI 375

Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +    FSVK+ G  I  D  +S+F  F        R   G GLGL+I +   +L G
Sbjct: 376 ERFKDPWIRFSVKDTGVGIQPDKIESLFEAFKQEDSSTTRKYGGTGLGLAITKQLSDLLG 435

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G + + S     +     +P 
Sbjct: 436 GEIFVKSELGTGSEFRIELPL 456


>gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
 gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
          Length = 876

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 5/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA   +     +A + K  F  ++S+ELR+PLT I    + +      +LN++Q   ++ 
Sbjct: 356 RATLMRRRIEEEAIKAKLQFFTNISHELRTPLTLIADPVNYIIHD--DNLNTQQRSMLQI 413

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +  +L  LV++ILD   V +G M+L  S   L + + +     +    + +I I + 
Sbjct: 414 VQRNVLVLTQLVSEILDFRKVQSGKMELRLSDFNLTENMKQWITLFSASAQKKHITISLD 473

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   +    AD  ++ +I   +LSNA+ ++++G  + LKA + +   I SV +NG  I  
Sbjct: 474 APDTI-MLRADHDKIERICYNLLSNALKYTAEGGKISLKAIKKDERVIISVTDNGCGIAS 532

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           D    +FNRF    + G  RG G+GL+IV++F  LH G VS +S     +T    IP K+
Sbjct: 533 DELPYIFNRFYQAKNAG--RGTGIGLAIVKAFTELHHGEVSATSKLGKGSTFTINIPVKQ 590


>gi|320322202|gb|EFW78298.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331853|gb|EFW87791.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 595

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 149/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGDALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  ++++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPETREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E +     K  E +I + +
Sbjct: 419 TVTEEMQHLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  + +   + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|86360995|ref|YP_472882.1| two-component sensor histidine kinase/response regulator hybrid
            protein [Rhizobium etli CFN 42]
 gi|86285097|gb|ABC94155.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CFN 42]
          Length = 2099

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 140/306 (45%), Gaps = 22/306 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              +      +++ LQ T E L     +         + +       +  +A RAL EK  
Sbjct: 1363 QQLAAELQTQQRELQQTNEQLGQKAQQL------EERNVEVEAKNQEIEQARRALEEKAT 1416

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L++KQ ++ + I  + T L
Sbjct: 1417 ELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSAKQVEFAKTIHGAGTDL 1476

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
            LNL++DILDL+ +++G + ++   I +++LL  + +    +    N+   V     +  S
Sbjct: 1477 LNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRNLSFAVEVGADVTKS 1536

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNN 726
             + D +RL QI   +LSNA  F+++G   +  A+  +G                F V + 
Sbjct: 1537 IITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASVTSGWSPEHPSLRHAPSVIAFEVVDT 1596

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP +  + +F  F        R   G GLGL+I     NL GG + + S+    +T 
Sbjct: 1597 GIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSAPGVGSTF 1656

Query: 785  NCRIPS 790
               +P 
Sbjct: 1657 VLYLPL 1662


>gi|288918260|ref|ZP_06412614.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
 gi|288350297|gb|EFC84520.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
          Length = 1065

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 135/303 (44%), Gaps = 15/303 (4%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A  + +   E +  Q  L+  +  + E +   L   Q     +   +  +A + + E+ 
Sbjct: 418 LAGELQARSSELQVRQEELQRSNADLEEKAA--LLERQNRDIEIKNIEIEQARQEIEERA 475

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ ++   I ++ + 
Sbjct: 476 QQLALASKYKSEFLANMSHELRTPLNSLLVLARLLAQNPTRNLTPKQVEFANVIHSAGSD 535

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDILDL+ V+AG M ++     L  L+++++ +      E  +   V     + +
Sbjct: 536 LLQLINDILDLSKVEAGKMDVHREWADLGKLVDDLQATFQPLTAEKGLDFAVEVAPDVPT 595

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---------GDFIFSVKNNGSS 729
               D QRL Q+   +LSNA+ F+  G  V L+    +             F+V + G  
Sbjct: 596 RLFTDEQRLEQVLRNLLSNAVKFTEDG-QVALRIHTSHPLEPDSGATSKIAFAVVDTGVG 654

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  K +F  F         +  G GLGLSI      L  G + + S     +T    
Sbjct: 655 ISDENLKRIFGAFQQGDGTTSRKYGGTGLGLSISREVAALLDGDLRVESEFGRGSTFTLY 714

Query: 788 IPS 790
           +P 
Sbjct: 715 LPL 717


>gi|218459898|ref|ZP_03499989.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Kim 5]
          Length = 374

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 168/370 (45%), Gaps = 7/370 (1%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           K    V+     ++  ++GV V G +G I+  N +  +L+  +E   + G     + A  
Sbjct: 1   KLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYDEQE-TRGKPFVMLFAHE 59

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVT 546
           S+         L    + S  ++ + + G         L  ++  L ++        ++T
Sbjct: 60  SQKAVLDYLNGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGRLTSSNGYCAVIRDIT 119

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605
              R E  L     A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + + +
Sbjct: 120 QWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPR 179

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y   I  S   +L++VND+LD++ ++AG M L+++ + LN+ ++E    +  + +  
Sbjct: 180 YIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQ 239

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVK 724
            + I+      +   VAD + + QI   ILSNA+ F+  G  +++  + + NG  +  V+
Sbjct: 240 RVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVR 299

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  +           F   +    R    G GLGL + ++ ++ +    SI+S+    
Sbjct: 300 DTGIGMTRAELDHAMKPFRQVSSTQARHRGDGTGLGLPLTKAMVDANRATFSINSAPNEG 359

Query: 782 TTINCRIPSK 791
           T +    PS+
Sbjct: 360 TLVEITFPSQ 369


>gi|190894793|ref|YP_001985086.1| putative two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
 gi|190700454|gb|ACE94536.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
          Length = 2100

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 139/306 (45%), Gaps = 22/306 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              +      +++ LQ T E L     +         + +       +  +A RAL EK  
Sbjct: 1363 QQLAAELQTQQRELQQTNEQLGQKAQQL------EERNVEVEAKNQEIEQARRALEEKAT 1416

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ KQ ++ + I  + T L
Sbjct: 1417 ELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEFAKTIHGAGTDL 1476

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
            LNL++DILDL+ +++G + ++   I +N+LL  + +    +    N+   V     +  S
Sbjct: 1477 LNLISDILDLSKIESGTVSVDAEEIFVNNLLEVMARPFRHEAETRNLSFAVEVGADVAKS 1536

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNN 726
             + D +RL QI   +LSNA  F+++G   +  A+  +G                F V + 
Sbjct: 1537 IITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASATSGWSSDHPSLRHAPSVIAFEVVDT 1596

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP +  + +F  F        R   G GLGL+I     NL GG + + S+    +T 
Sbjct: 1597 GIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSTPGVGSTF 1656

Query: 785  NCRIPS 790
               +P 
Sbjct: 1657 VLYLPL 1662


>gi|78778121|ref|YP_394436.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
 gi|78498661|gb|ABB45201.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
          Length = 775

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 18/324 (5%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQTML 540
           I         ES  W + +  +T+ +DER S      + +++ +  +  I  +P +  + 
Sbjct: 324 IKNILKESLQESLLWAIDSYSVTTKEDERSSDISERIVFNNATIFITLNIKKIPYSSFIF 383

Query: 541 TFVNVT--------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +++          +   E  LT   +    A+  K+ F+ ++S+ELR+PL  IIGF+ 
Sbjct: 384 DILHIFLEILKITLINREKEHKLTIFADKAESANRSKDMFLANMSHELRTPLNAIIGFSQ 443

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+T +    N     Y+E IS +   LLNLVN ILD A ++AG +  +    +L+D+  
Sbjct: 444 ILQTREEIPQN--MRSYIEKISIAGNNLLNLVNTILDFAKLEAGKISYHPRMTLLSDIAK 501

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E+   I+      NI + + +D  L  F+ D Q + Q    ILSNA+ F+     VI   
Sbjct: 502 EISIIISPLAEAKNITLTMPADISLALFI-DAQLMKQSLINILSNAIKFTPNDGEVIFSI 560

Query: 713 A--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN-L 767
              +    ++ S+ +NG  + ++    +F  F    +  +   +G GLGL I +  +  L
Sbjct: 561 TFDKQRNQYVLSICDNGVGMDKESISQLFTPFTQIDNHLQTASKGTGLGLVITKKIVEDL 620

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           HGG + + SS    +     +P +
Sbjct: 621 HGGKIWVESSVGEGSCFYIAVPIQ 644


>gi|17228803|ref|NP_485351.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17130655|dbj|BAB73265.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 585

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 121/255 (47%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    +   +A  +K+ F+ +VS+E+R+PL  +IGF  L+       +  K +Q++  
Sbjct: 316 KELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLILEGMADDVEEK-NQFLSE 374

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S  LLN++NDILD+A ++AG M+L  + I L +L ++V   +  +    N+  ++ 
Sbjct: 375 AHQLSLHLLNIINDILDIAKIEAGKMELVCAPIKLEELFSDVDNFMRPQAEVKNLSFRMQ 434

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST-----VIL---KAARDN--GDFI 720
                   V   + QRLLQ+   I+ NA+ F+ +G       V+L   K    N  G   
Sbjct: 435 LPPTSDEIVVQGNYQRLLQVMLNIVGNAIKFTHEGGITVTADVVLKKGKLQEQNFPGMVR 494

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             + + G  +  D    +F  F  V  +   Q  G GLGL+I +  +   GG V   S  
Sbjct: 495 VRIADTGIGVSLDQQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLVETMGGEVHFYSLG 554

Query: 779 EG-VTTINCRIPSKE 792
           EG  +T+   +P  +
Sbjct: 555 EGLGSTVTFTVPLYQ 569


>gi|330890979|gb|EGH23640.1| sensory box histidine kinase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 595

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 150/359 (41%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGDALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            S+  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RSELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  ++++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPETREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E +     K  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  + +   + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator
            protein [Herbaspirillum seropedicae SmR1]
 gi|300075814|gb|ADJ65213.1| two component hybrid sensor histidine kinase/response regulator
            protein [Herbaspirillum seropedicae SmR1]
          Length = 1524

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 114/684 (16%), Positives = 236/684 (34%), Gaps = 69/684 (10%)

Query: 157  GRVSGSCAFLR-ILSLDGIYSELAE--------TTLKCKKLSNHISVFKVLFDSLDFLVW 207
            GR  G    LR I     I  +L             + + L    ++ + + + +  LV 
Sbjct: 455  GRAVGKAFMLRDITHEKNIERQLQRINEELEWTVQQRTQALHQAKTMLQTVLNVMPSLVA 514

Query: 208  HRDQAGDILWANISYKKNTETEGIVFQKAIGE---SRKLFKEEIKKRMISSSALEKNFCE 264
            + D+     +AN +Y++  + E                LF++ +       +  ++ F  
Sbjct: 515  YWDRHLINHFANAAYERAFQREAGQLNGVYMPDLVGPALFEKALPHIKGVLAGAQQTFER 574

Query: 265  TVSTLEHGNNKSY-----KIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNL 315
            +V     G          +I  +    G   +A DV++       +++ L     +L  +
Sbjct: 575  SVDDPVLGARHMLTTYIPEIGDLGEVTGFYVVAHDVTEITHNRNQLSETLAQNQSLLDQV 634

Query: 316  TV-------------AIAI--FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
                            +AI   D    +   N    ++       +      +      R
Sbjct: 635  QDANTLLNNVLSSAKGVAIIATDTEGLVTLFNSGAEQMLGYRAEDVVGKLKEEHF--SSR 692

Query: 361  SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
                LP Q +                  + T  + + +  H+        G +++  +++
Sbjct: 693  PEAALPGQDSHTELLYRRHDGATLPVARQQT-SMFDHRQRHL--------GYLYIALDVS 743

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +Q    +             +    GV V+  D  +   NP    ++   +        +
Sbjct: 744  LQRQQASALAAARDQLVLAAEVAKLGVWVWDKDSDVLEYNPQVAEIYGFGDR--GGAPRV 801

Query: 481  RNIAATCSRYYNESDGW---DLFAAIITSFDDE----RKSLQGTLELLSDSVLEYSIIPL 533
               A    R + +   +    L A +    D E         G +  +            
Sbjct: 802  STYADWRRRVHPDDVDYVEKTLRAGLAVDGDHEPVFRVVRDDGGIRYVQARAYVQRDGAG 861

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               + +   +++T  +  E  L +      +A+  K+ F+  VS+E+R+P+  ++G   L
Sbjct: 862  RPVRVICINLDITQRIEFENNLVDARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQL 921

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+ ++       Q  Y++    S+  LLNL+ND+LD + +DA  ++L+     L    + 
Sbjct: 922  LQRTQPLPA---QQDYLDKAEISAKSLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHN 978

Query: 654  VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            +   +A    +  + + +  D +L    V D  RL Q+   +  NA+ F+ +G  + +  
Sbjct: 979  LAAVLAGSPPQAGVSLHIALDPQLPRRLVGDAHRLQQVLVNLTGNALKFTHQGH-IDVHF 1037

Query: 713  ARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
             R +            V + G  I  D    +F+ F        RR  G GLGL+I +  
Sbjct: 1038 TRLDPLPGRTVALRVEVSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHL 1097

Query: 765  INLHGGHVSISSSDEGVTTINCRI 788
            + L GG + +SS     +     +
Sbjct: 1098 VGLMGGQLQVSSEPGRGSRFWFDL 1121


>gi|119486633|ref|ZP_01620683.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
 gi|119456250|gb|EAW37382.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
          Length = 536

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 134/353 (37%), Gaps = 52/353 (14%)

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           AF  L             I  +    ++   ES   D    I  + DDE   L   L  L
Sbjct: 206 AFLGLVLAVYISWVIAYPIATMIKVANQVGEES---DFAIQIPVTTDDEIGELTYALNHL 262

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              V EY+                         L +       A+  K+ F+ ++S+ELR
Sbjct: 263 IQRVAEYT-----------------------EELEKAKVLAESANRSKSVFLANMSHELR 299

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIG++++L               +E I  +   L ++++DILD++ ++AG + L 
Sbjct: 300 TPLNAIIGYSEMLHDEADDLGCHDFLPDLEKIQTAGRHLRDMISDILDISKIEAGHVTLY 359

Query: 642 YSTIVLN-DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                +   LL +V  +      +N   +K+    ++G   AD  ++ QI   +LSNA  
Sbjct: 360 LEDFSVEKQLLKDVITTTKPLAEKNRNTVKIEIKNEIGQMYADLPKVRQILLNLLSNACK 419

Query: 701 FSSKGSTVILKAARD----------------------NGDFIFSVKNNGSSIPEDMCKSV 738
           F+  G  + +   R                           IF V + G  + ++  K +
Sbjct: 420 FTQDG-VITIVVKRVKSKPSSTRRTLSSGSRFGGNQMQQYLIFKVIDTGIGMSDEQQKLI 478

Query: 739 FNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F        +R  G GLGL+I +    + GG +++ S +   +T    +P
Sbjct: 479 FKAFTQADASTTKRFGGTGLGLAISQRLCEILGGGITVESQEGKGSTFIVWLP 531


>gi|209966096|ref|YP_002299011.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959562|gb|ACJ00199.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 744

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 116/677 (17%), Positives = 248/677 (36%), Gaps = 50/677 (7%)

Query: 139 QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVL 198
           Q F+L    ++   + + G+ + S    RI S+    +E   T L    + +H  V    
Sbjct: 72  QRFELRCRRKDGRYLWLSGQSALSAGDGRIYSVCRDVTESKRTALHLLAVESHSRVGTWD 131

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
            D          + G + W+ +++ +   T+    +  + E+ + F  E    ++ + A 
Sbjct: 132 LDL---------ETGVLNWSPMTH-RIHATDPATHRPYLEEAGRFFPGEALPALLGAVAD 181

Query: 259 EKNFCETVST-----LEHGNNKSYKIVRVLN-----SFGEAGIAIDVSKEITVNDQLTHT 308
                  V          G  +                   G   D++++      L   
Sbjct: 182 LHQGGGPVRLELPFLTADGRARWVLFSAAAEAHAGRPRHVYGTLEDITEKRQERLHLLAF 241

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA------ 362
            +I+      I +   +   Q+ N     +       L      D +L   R        
Sbjct: 242 KDIVERSNDGIWVLGPDGRTQYANGRMAAIMGCSEQDLLPARFLDHVLAEPRPRVADLLT 301

Query: 363 ---NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
                  +  +++ W+ +  + + S+  H      P+G TLH          T+ +  ++
Sbjct: 302 GIVRVERDWSDFQMWRMDGSAFWASASIHP--RRAPDG-TLH---------STVVLVRDI 349

Query: 420 TV--QVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSP 476
           +   +V+LE + N       + I  L  G        G +  S+  +     +++     
Sbjct: 350 SAWRRVELEREVNRARLELSQNIARL--GYWELDLRSGSVFWSDVVYDIFGVSKDQGAHE 407

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                       R         + +      +       G +  + +             
Sbjct: 408 QPAFLAAVHPDDRDRVLQMQQRIESIGFADVEHRVVRPDGEVRWVHEVAKLDRDADGHPL 467

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + + T  ++T     +  L +       A+  K  F+  +S+ELR+PL  I+GF+++++ 
Sbjct: 468 RIIGTVQDITPQKAVQARLDQAVAQAEAANRAKTQFLATMSHELRTPLNAILGFSEIIRD 527

Query: 597 SKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              G ++     +Y  ++  S++ LL+++ND+LDLA V++  + L    + L + +    
Sbjct: 528 GTFGQVSPGIYQEYAGHVFDSASHLLDIINDVLDLAKVESATVTLTPEPVPLEETVRRAV 587

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           Q++     +  I   V   G   + +ADR+ LLQ    ILSNA+  S +  TV ++   +
Sbjct: 588 QTVRPIARDRRISFAVQG-GPAVTVLADRRALLQSLYNILSNALRHSPENGTVEVRLEPE 646

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           +G    ++++ G   P D+   +   +    N +    R  GLG +I  + +   GG + 
Sbjct: 647 DGFGALTIRDFGPGFPPDVLAELGQPYPGRRNVYVSAARSTGLGYAITAALLGAMGGEIE 706

Query: 774 ISSSDEGVTTINCRIPS 790
             ++ +G   +  R+P 
Sbjct: 707 ACNAPDGGACVTFRLPL 723


>gi|220929661|ref|YP_002506570.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999989|gb|ACL76590.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 463

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 14/284 (4%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S     K++ G  EL+++  L+  +I   N           +  +    L      ++K 
Sbjct: 191 SIIHPLKNVTGAAELMAEGNLDVRLIKSRN----------DEIGKLSDTLNYMASEIQKR 240

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + IKN F+  VS+ELR+PLT+I G+ + +            S  +  I   S  L  +V 
Sbjct: 241 ERIKNDFISTVSHELRTPLTSIKGWANTIIDDDYSD-REILSDGLNIIVKESDRLTEMVE 299

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD +   +G ++L      +  +++ +++ ++    +  I   V  + K+ + V D+ 
Sbjct: 300 DLLDFSRFVSGNVELKKEKTDVCSIIDYIEKQMSGMAKKGKIIFSVKCE-KVPTIVLDKN 358

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ Q+   +L NA +F+ K   V L +  +N + +F V++ G  I  +    V  +F   
Sbjct: 359 RITQLLINLLGNAFNFTPKNGMVALSSFLENDNIVFRVEDTGCGISPEELPLVTEKFYKG 418

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                    GLGLSI +  + LH G + I S  +  T +  RIP
Sbjct: 419 KSSNSH--TGLGLSICDEIVKLHNGSLEIESELDKGTIVTVRIP 460


>gi|86742728|ref|YP_483128.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3]
 gi|86569590|gb|ABD13399.1| GAF sensor hybrid histidine kinase [Frankia sp. CcI3]
          Length = 1406

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 138/296 (46%), Gaps = 18/296 (6%)

Query: 512  KSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +S + T EL S SV L+ +   L     +L   N  +   A   L EK E L  + + K+
Sbjct: 824  QSQRLTQELRSQSVELQRTNNELEEKAALLEEKNH-EIELARIGLEEKAEQLALSSQYKS 882

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+ ++S+ELR+PL +++    LL  +   +L+ KQ  + E I ++ + LL L+NDILDL
Sbjct: 883  EFLANMSHELRTPLNSLLILAKLLADNPDRNLSRKQIDFAETIHSAGSELLELINDILDL 942

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
            + V+AG M ++ +T+    L + V         E  +  +V     +   FV D QRL Q
Sbjct: 943  SKVEAGKMNVDATTVRTAALCDAVAGVFGPVAEEKGLSFQVNLAPDVPAEFVTDEQRLQQ 1002

Query: 690  IFSKILSNAMDFSSKGST---VIL----------KAARDNGDFIFSVKNNGSSIPEDMCK 736
            +   +LSNA+ F+  G+    V +                    F+V + G  +  +  +
Sbjct: 1003 VLKNLLSNAVKFTDTGTVRLDVTVARPDLPFLSPSLCSAGTVLSFAVTDTGIGVAVEKLR 1062

Query: 737  SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F  F         +  G GLGLSI +    L GG +++SS     +T    +PS
Sbjct: 1063 MIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGAIAVSSVVGRGSTFTLYLPS 1118


>gi|121998683|ref|YP_001003470.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
 gi|121590088|gb|ABM62668.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
          Length = 932

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 7/270 (2%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +L+ +   +  ++ +    +  +S  A   L   NE L++ D++K+ FV  VS+ELR+P
Sbjct: 638 EILDATSRAIEYSRRLEEKSHALES--ATEELRAANERLKELDQLKDEFVSMVSHELRTP 695

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT+I  F ++L  +     + ++ +++E +   S  L  L+N +LDL+ +++G  +    
Sbjct: 696 LTSIRAFGEILLNNPEMDAD-QRREFLEVVVRESERLTRLINQVLDLSKIESGSAQWQLE 754

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + L+ L  E  +S      +   ++ +       +   D  RL+Q+   +LSNA  F+ 
Sbjct: 755 DVDLSRLAREAAESTQQLFTDRQTQLHIEIASDDNAIKGDPDRLMQLIINLLSNAAKFTE 814

Query: 704 KG-STVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
            G   V L+  +  GD    SV +NG  I  +  + +F++F   + +  G+ +G GLGL+
Sbjct: 815 PGEGQVWLRLEKGRGDTLRLSVTDNGPGISAEDQRRIFDKFHQISQQQAGKPKGSGLGLA 874

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I     + H G + + S      +  C++P
Sbjct: 875 ICRLIADAHWGTLWVDSEPGAGASFVCKLP 904


>gi|269967900|ref|ZP_06181941.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B]
 gi|269827498|gb|EEZ81791.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B]
          Length = 566

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 8/245 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ER +    +   ++++    FV  +++ELR+PL  ++G  +LL  ++   L  +Q QY+
Sbjct: 188 LEREVE-LRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQ---LEEEQRQYL 243

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             ++ S  +L  ++ND+LD + ++AG+M++ +      +L   +    A K  E  I   
Sbjct: 244 SNLTQSGDLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFS 303

Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +     +  F V D +R+ QI   ++ NA+ F+  G  V L+    NG   F V++ G  
Sbjct: 304 IDKKLGIPEFLVGDLERITQILVNLVGNAIKFTHLGGVV-LRVEWLNGTAYFEVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S  S +   TT    
Sbjct: 363 IPIKAQPSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKVA 422

Query: 788 IPSKE 792
           IP +E
Sbjct: 423 IPLEE 427


>gi|257093441|ref|YP_003167082.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045965|gb|ACV35153.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 681

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 122/314 (38%), Gaps = 10/314 (3%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              I    +R Y   D  +    I ++   +R+  + T   L   V+  + +        
Sbjct: 216 FFRINENANRLY--VDSSERLRRIESALATQREHFRLTEWFLVGLVVLLATVA-GWFFVR 272

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            T        +   A+    +   +A   K+ FV  +S+ELR+PL  I+GF  +L     
Sbjct: 273 QTREANDKLRKTWTAMRVARDEAERASRAKSDFVSRMSHELRTPLNAILGFAQVLDRE-- 330

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L +    YV  I  S   LL LVN +LDLA ++AG + L          + EV   +A
Sbjct: 331 -PLQASHQDYVRLIMRSGQHLLELVNQVLDLAKIEAGRLTLEAIVFDFRQTIAEVGGIVA 389

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +  +  +         L    + D  RL Q+   + +NA+ F+  GS V L     +  
Sbjct: 390 QRAADKGLDFIPKVAEDLPSHVIGDPTRLRQVLINLTANAVKFTEAGS-VELAIDAHDQR 448

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
            +FS+++ G  + E     +F  F         +  G GLGL I    +   GG + + S
Sbjct: 449 LLFSIRDTGIGMDEAALGRLFLPFGQGDESITRKYGGTGLGLMIARELVQAMGGEIEVDS 508

Query: 777 SDEGVTTINCRIPS 790
                +     +P 
Sbjct: 509 KPGAGSCFRFSLPL 522


>gi|167624483|ref|YP_001674777.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167354505|gb|ABZ77118.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 579

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 124/261 (47%), Gaps = 10/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           Q +L    ++ + + ++ L    E  ++   ++     FV  +++ELR+PL  ++G  +L
Sbjct: 183 QLLLFCEMISAAHKRQQLLARTIEEKQRAESSERSTRDFVAMINHELRTPLNGLLGSAEL 242

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +  ++   L   Q Q +  +  S  +L  ++ND+LDL+ + AG++++   +     +   
Sbjct: 243 MSDTQ---LTPHQRQLLNTMHQSGELLRVIINDLLDLSKMSAGMLQIVEISFSPRQVCTM 299

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +      +  E  +        ++    + D  R+ Q+F  ++ N++ F+  G  + +  
Sbjct: 300 IYDIFKQRTAEFGLSFAFNYHTEVPERLLGDPDRIKQLFVNLIGNSIKFTQSG-QITVDI 358

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
              +G F FSV + G  IP D   ++F+ F    +   R   G GLGL+I +  ++   G
Sbjct: 359 EWQDGQFCFSVTDTGCGIPADKVDTLFDPFTQVNNSSNRVYEGTGLGLAICKHLVDEMHG 418

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            ++++S  +  T  N R+P K
Sbjct: 419 DLTLTSELDKGTQFNIRLPLK 439


>gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 929

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 14/247 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LN+ Q+ Y+  I
Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGLIGFT---RQTLKTPLNTTQTDYLLTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LLN++ND+LD + ++AG + L      L++ L++V   +A   HE  + + +  
Sbjct: 334 ERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSI 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-----FSVKNNG 727
              +   FV D  R+ QI + +L NA+ F+ +G  + ++  +   +         +++ G
Sbjct: 394 QNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQG-NIDIRVEKRRQELHQVLLEVQIRDTG 452

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F        RR  G GLGL I +  +   GG +S  S     +T  
Sbjct: 453 IGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFW 512

Query: 786 C--RIPS 790
               +P 
Sbjct: 513 FHITLPL 519


>gi|84387676|ref|ZP_00990693.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
 gi|84377521|gb|EAP94387.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
          Length = 606

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 157/381 (41%), Gaps = 29/381 (7%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L+    L ++ NTL +   +      + + V          NP    + +  +       
Sbjct: 82  LSEIQKLTSELNTLKEASNDINVRFPQMIWV---------GNPLPSVVEEYVKTADKQLV 132

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--------- 529
            +  +     +   E    +L   + +   DE  + +   E L D++   S         
Sbjct: 133 LLDKMLKAKQQIVPEVSLIELERQVFSEEMDE--AAEHVHERLMDNIFLTSKAAVYTLIL 190

Query: 530 -IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            II + +A  +     + +  + + AL        +A+  K+ F+  +S+E+R+P+  +I
Sbjct: 191 FIILIFSAVFLYLNHYIIELKKTKLALQVAVNKAEEANLAKSMFLATMSHEIRTPMNGVI 250

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G T LL +    + +     +++ +  S   L+ ++N+ILD + ++ G +        L+
Sbjct: 251 GMTQLLIS---DNKDPSIQTHLDTLLESGEHLMVVINEILDFSNLEQGSLVFVQEEFELS 307

Query: 649 DLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            LL  +K S   +  E  +++   ++   +    V D+ R+ Q+   ++ NA+ F+S G 
Sbjct: 308 KLLVPIKNSFQPQASEKKLQLIFDTNSLPEDLILVGDKTRIRQVIYNLVGNAIKFTSDGQ 367

Query: 707 T-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVES 763
             V+LK   D  +    V + G  IP    K +FN F     R      G GLGLSIV+ 
Sbjct: 368 VKVVLKYESDKNELCIQVSDTGIGIPSHRLKGIFNAFEQADVRTMHDFGGTGLGLSIVKK 427

Query: 764 FINLHGGHVSISSSDEGVTTI 784
                GG ++++S     +  
Sbjct: 428 ICLSMGGDITVTSELGSGSCF 448


>gi|302381782|ref|YP_003817605.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192410|gb|ADK99981.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 663

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/497 (18%), Positives = 182/497 (36%), Gaps = 44/497 (8%)

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
           ++    + +    +L+ +     A  P+ + L              +  +     F    
Sbjct: 34  RDTQTAWWSPRMFDLFGMPQT--AEVPTIEALYRMYH--------PDDASLAARSFMALF 83

Query: 384 SSETHKDTWHL---PNGQTLHV----IVTSNPRGGTIWMF---ENLTVQVDLETKYNTLV 433
           +SE      +    P+G   H             G +W+     ++T  VD    +    
Sbjct: 84  ASEAPVTLRYRVVHPSGAVRHHLTWGRRQPADANGEVWLIGMVMDVTDHVDDAVMF-EAE 142

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +       H S+ V        +   +PA +++       +        +A    +    
Sbjct: 143 RAFRFVAGHTSDMVVRHQVGVGLTYVSPAAKTVLGYSPREMLGRAPGDFVAPGDLQRVRG 202

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDS 548
                +  A   +   E    +G  +   +  LE +   + N      + +    ++T  
Sbjct: 203 IVHGRI--ARRETVSTEGYEYRGIHKDGHEVWLEANPRLVINGAGELSEVVDVVRDITAR 260

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+  L         A + K+ F+ ++S+ELR+PLT+I+GF+ L+     G L++    
Sbjct: 261 RAAQAELQSARLLAEAASQAKSEFLANMSHELRTPLTSILGFSRLI--GAGGDLSASDRG 318

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I ++   LL +VNDILD + ++AG + L+     +  L       +  +     + 
Sbjct: 319 YLDLIRSAGETLLTVVNDILDFSKLEAGALALSPEPFSVAALGEGATALLREQAEAKGLV 378

Query: 669 IKVIS----DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIF 721
           +               V D  RL Q+   +L NA+ F+ +G  V L  + +   +G    
Sbjct: 379 LSCEILGAGPAGDARLVGDVTRLRQVLLNLLGNAVKFTERG-NVRLSLSVEPAQDGTATL 437

Query: 722 --SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  +     + +F RF        RR  G GLGL+I    +++ GG +   S 
Sbjct: 438 SASVTDTGPGLAAGQIEQMFERFTQADGSVSRRFGGTGLGLAISRRLMDVMGGEIGARSD 497

Query: 778 DEGVTTINCR--IPSKE 792
               +T   R  +P  E
Sbjct: 498 GSTGSTFWFRTVLPVAE 514


>gi|228945617|ref|ZP_04107967.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814135|gb|EEM60406.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 444

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 206 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++
Sbjct: 325 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDD 382

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 383 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 440

Query: 787 RIPS 790
           ++P 
Sbjct: 441 KLPL 444


>gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 543

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 8/243 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A     +A   A + K+ F+ ++S+ELR+PLT ++G T++L T +    + ++ Q +  I
Sbjct: 155 ARQLAEQAAHAASQTKSEFLANMSHELRTPLTAVMGLTEVLNTEE---TDQEKRQLLAMI 211

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
                 LLNL+NDILDL+ ++AG ++ N       ++  EV  S+       +I +    
Sbjct: 212 RQGGDHLLNLINDILDLSKIEAGRIENNKIACQPGEIAAEVVDSLRVSAAAKSIELSWTM 271

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDF-IFSVKNNGSSI 730
           D  + +   A   RL QI   +  NA+ F+  GS TV L+    +     FSV + G  I
Sbjct: 272 DDNMPTTIAAAPIRLRQILFNLAGNAVKFTDHGSVTVHLQIDPLDSQLLRFSVTDTGEGI 331

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P +  K +F  F         +R G GLGLSI +      GG + + S     +T   R+
Sbjct: 332 PPEGLKLLFEPFSQLDGTAARRRDGAGLGLSISKRLAETMGGTIEVESQPGQGSTFALRL 391

Query: 789 PSK 791
           P +
Sbjct: 392 PLE 394


>gi|330810584|ref|YP_004355046.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378692|gb|AEA70042.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1131

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 131/255 (51%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + QT L    +      ++AL +  EA   A+  K+ +V  +S+ELR+PL +I+GFT +L
Sbjct: 647 DRQTQLLMQEIEAHRLTDQALQDAKEASEAANAAKSRYVTGLSHELRTPLNSILGFTQIL 706

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     ++  +    +  I  S + LL+L++ +LD+A ++AG ++L  + I   +L++++
Sbjct: 707 QRDA--AMPEQHQDALATILRSGSHLLSLIDGLLDVAKIEAGKLRLEATEIPFPELIHDL 764

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +     +  +  +R ++   GK+ + V  D +R+ QI   +L NA++F+  G  V L+ +
Sbjct: 765 ELMFTPQARDKGLRFRLELIGKMPAVVRGDEKRVRQILINLLGNAVNFTDSGE-VCLRVS 823

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                  F + + G  I  +  + +F  F       Q +GVGLGL+I     +L GG + 
Sbjct: 824 YMRETATFDIIDTGIGIDPEHIERIFQPFERGDLMRQDKGVGLGLTITRMLTSLMGGELQ 883

Query: 774 ISSSDEGVTTINCRI 788
           + S  +  T    R+
Sbjct: 884 VKSQQDKGTCFQVRL 898


>gi|299148168|ref|ZP_07041230.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
 gi|298512929|gb|EFI36816.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
          Length = 1365

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 149/344 (43%), Gaps = 16/344 (4%)

Query: 449  VFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            V+  +G     N     S  +   + L PG ++  + A  +         + F  II  +
Sbjct: 726  VYKLEGFETEWNYSRHVSFARASYSNLPPGEYVFKVKACNNNGKWSEATTEFFVHIIPMW 785

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +     TL +     L   +I    A+  +      + +   +        + +  +
Sbjct: 786  --YQTWWAKTLFIFFSLGLLVFVIYFFIARAKMKMQVRIEQIERNK--------IEEISQ 835

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F  ++S+ELR+PL+ I+   + LL  S L     +Q   ++Y+  +   LL++VN 
Sbjct: 836  EKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQ 893

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD    +AG M ++ + + + +LL +          +  I   + SD +   F ADR  
Sbjct: 894  LLDFRKAEAGAMPIHVAQVNVEELLQDAFALFKENAQKRAISFHIKSDLEGRLFPADRTY 953

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +  I   +LSNA  F+  G ++ L    +   + F+V+++G  +  +    +F RF    
Sbjct: 954  VETILMNLLSNAFKFTPDGGSISLSLWTEGDTYGFTVRDSGIGMSPEQLTRIFERFYQVD 1013

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              GQR+G G+GLS+V+  +  H G ++++S     T     +P+
Sbjct: 1014 --GQRKGTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKVTLPA 1055


>gi|294495905|ref|YP_003542398.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666904|gb|ADE36753.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 554

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 203/529 (38%), Gaps = 51/529 (9%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI---DLAFLATNPSNDELLEFLRSA 362
           T   EI+    + +  +D ++  +  N     +         FL    +  EL   +   
Sbjct: 32  TSFEEIIDKSPMIVFFWDGDQRTET-NYVSERVTVFGYSPEDFLDGRMTYKEL---IHPE 87

Query: 363 NKLPEQLNWKTWKEN-------IFSVYKSSETHKDTWHLP-----------NGQTLHVIV 404
           ++   Q  ++ ++ N        + +  SS + K    +            +G  L V  
Sbjct: 88  DRSFVQNEFERFRNNSSNQFTCEYRIVDSSGSIKWISEITFPCRCDDNLEYHGILLDVTD 147

Query: 405 TSNPRGGTIWMFENLT----------VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
                   +    +++            +D++   + ++   G+ +D  + GV +  P+ 
Sbjct: 148 RKISERAILEKERDISILYSASALASESLDVDDLLDEMLMEMGDLLDITAGGVYIINPEE 207

Query: 455 RIKLSNPAFRSLWKTEENRLSPG---THIRNIAATCSRYYNESDGWDLFAAIITS----- 506
           +  +   A+          +          N A   S  +   D +     +        
Sbjct: 208 KEAVL-RAYIGPAGEYPESIHYCAIENMFDNSAGPASGPFVAEDTFHYQGQMQRKKYLLF 266

Query: 507 FDDERKSLQGTLEL---LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
               R+ + G ++L   L+  V E S+  L +    +      ++ +         E L+
Sbjct: 267 RLYSREKVMGFIQLSIPLNHEVSEKSLQVLEHVGKHIGIA--IENAQLFEMTQRAYEDLK 324

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             D++K+ F+ ++++EL++PL +I GF+DLL   +LG LN  Q +    +  ++  L  L
Sbjct: 325 HLDKLKSEFLANLTHELKTPLISIKGFSDLLDKGRLGELNEDQKKANLAVVRNADRLKRL 384

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++ +L ++    G  +  +  + + +++ +    +       ++ I +    K      D
Sbjct: 385 IDSLLYMSMEKEGKYQYQFEELDVGEIITDAMDKMKVHTEGKDVDIGIDIQNKSYLTCGD 444

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           R RL  +F  IL NA  F+     + +    +       +K+NG  IP++    +F+ F 
Sbjct: 445 RDRLTNVFLNILDNASKFTKGSGRIKITLKEEEEYIRIKIKDNGIGIPKEKIPRIFDMFY 504

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  R   GVG+GL I +  I++H G +   S +   TT++ ++P 
Sbjct: 505 QIDGSTTRIYNGVGMGLYICKKVIDIHNGSIWARSMEGLGTTVHVKLPK 553


>gi|260171984|ref|ZP_05758396.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|315920296|ref|ZP_07916536.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|313694171|gb|EFS31006.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
          Length = 1365

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 149/344 (43%), Gaps = 16/344 (4%)

Query: 449  VFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            V+  +G     N     S  +   + L PG ++  + A  +         + F  II  +
Sbjct: 726  VYKLEGFETEWNYSRHVSFARASYSNLPPGEYVFKVKACNNNGKWSEATTEFFVHIIPMW 785

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +     TL +     L   +I    A+  +      + +   +        + +  +
Sbjct: 786  --YQTWWAKTLFIFFSLGLLVFVIYFFIARAKMKMQVRIEQIERNK--------IEEISQ 835

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F  ++S+ELR+PL+ I+   + LL  S L     +Q   ++Y+  +   LL++VN 
Sbjct: 836  EKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQ 893

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD    +AG M ++ + + + +LL +          +  I   + SD +   F ADR  
Sbjct: 894  LLDFRKAEAGAMPIHVAQVNVEELLQDAFALFKENAQKRAISFHIKSDLEGRLFPADRTY 953

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +  I   +LSNA  F+  G ++ L    +   + F+V+++G  +  +    +F RF    
Sbjct: 954  VETILMNLLSNAFKFTPDGGSISLSLWTEGDTYGFTVRDSGIGMSPEQLTRIFERFYQVD 1013

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              GQR+G G+GLS+V+  +  H G ++++S     T     +P+
Sbjct: 1014 --GQRKGTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKVTLPA 1055


>gi|227114441|ref|ZP_03828097.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 928

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 161/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     N L+    +R     
Sbjct: 327 QLEENEQFNRKIVASAPVGICILRINDGTNILSN----ELAHNYLNLLTHEDRLRITRII 382

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +          F  ++TS +   +         +++V             +   ++V+
Sbjct: 383 CEQQSK-------FVDVMTSRNHHLQISFVHSRYRNENV------------AICVLLDVS 423

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL    
Sbjct: 424 ARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPQDA 480

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +    + +  
Sbjct: 481 NRLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYLPLVVKKR 540

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    D  +  S   D  RL Q+ S +LSNA+ F+  G  +I +    +G   F V++
Sbjct: 541 LTLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIIFEVGCRDGYLEFVVRD 599

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I S     + 
Sbjct: 600 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 659

Query: 784 INCRIPS 790
              RIP 
Sbjct: 660 FGVRIPL 666


>gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio
           vulnificus CMCP6]
 gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus CMCP6]
          Length = 1129

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 12/290 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ +         +  L      +  +  + + ++N+ L
Sbjct: 403 INTERKDEIGRLAISFERMQRSIRD---------KIQLIKTQNAELEKNLQLIQKQNDEL 453

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + AD++K+ F+   S+ELR+PL  +IG  + L +   G L S Q   ++ I  S   L  
Sbjct: 454 QLADKLKDEFLATTSHELRTPLHGMIGIAETLISGANGPLPSNQRYQLDIIIKSGQRLAT 513

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LD   +  G + +  S + L      V +     +    +RI       +    A
Sbjct: 514 LVDDLLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVSNDVAPVSA 573

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+   ++ NA+ ++++G  +++ A   +      V + G  IP +  + +F   
Sbjct: 574 DPQRLEQVLYNLIGNAIKYTTEG-KIVISANVVDDKVRVQVVDTGQGIPAEQLEHIFEPL 632

Query: 743 VSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +         R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 633 IQAGRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 682


>gi|329926653|ref|ZP_08281064.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328939062|gb|EGG35427.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 1017

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 4/246 (1%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             S RA   +   +E L   D++K+ F+   S+ELR+PL  IIG  D L     G L S 
Sbjct: 377 MKSSRAFFQVERLSERLLTLDKLKDEFLAKTSHELRTPLHGIIGLADALIDGSSGKLPSP 436

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +  +  S   L +LVNDILD + +    + L   T+ L   +    Q +     + 
Sbjct: 437 VIDLLRLMKVSGQRLAHLVNDILDFSKLKHQEIGLVLVTVNLRLAVELTLQVLNPLAEKK 496

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            +R+       +   +AD  RL QI   ++ NA+ ++  G+ V + A R  G     + +
Sbjct: 497 GLRLSHQLPDDM-YVMADENRLQQILHNLIGNAIAYTETGA-VTVTAKRLQGQLSIQITD 554

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I E     +F  F       R Q+ G G+GLSI +  + LH G + ++S     +T
Sbjct: 555 SGIGIAEADLDRIFESFEQINPLDRSQQGGTGIGLSITKKLVELHDGRIGVTSGLGEGST 614

Query: 784 INCRIP 789
            +  +P
Sbjct: 615 FSFTLP 620


>gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1111

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 10/289 (3%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-TEKNEALR 563
           T+F+ ERK   G L       + +  +     + + T     + + +   L  ++N+ L+
Sbjct: 384 TTFNTERKDEIGRL------AISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQ 437

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            AD++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ I  S   L NL
Sbjct: 438 LADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVIPASQKYQLDIIIKSGQRLANL 497

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V+D+LD   +  G M +  S + L      V +     +    IRI       L +  AD
Sbjct: 498 VDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQVPADLKAVSAD 557

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F   +
Sbjct: 558 PQRLEQVLYNLIGNAIKYTSEG-KIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLI 616

Query: 744 SN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                    R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 617 QAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 665


>gi|255306460|ref|ZP_05350631.1| putative two-component sensor histidine kinase [Clostridium
           difficile ATCC 43255]
          Length = 912

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/641 (18%), Positives = 245/641 (38%), Gaps = 71/641 (11%)

Query: 193 SVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEG---------IVFQKAIGESRK 242
            + +   D++   VW   D   +I + N  +K     +          I   + + E  K
Sbjct: 275 ELLRQALDTIPN-VWIVTDYDFNISYTNNKFKDEFSKDMNNYYKILTFIKEDEKVAEKLK 333

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
            F  +I          +K +  ++S  +  +N    +  + N      I ID      + 
Sbjct: 334 KFDNDISIIDKLVELNDKIYLLSLSNNKDESNYLISLNDITNE-----IKID----EEIR 384

Query: 303 DQLTHTYEILHNLTVAIAIFDQNR-----YLQFHNRSFVELWE----------IDLAFLA 347
           +       I+ N+   I +           +   N+ + + ++          ++  F  
Sbjct: 385 NINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCVSSDLVDMTLEQYFET 444

Query: 348 TNPSNDELLEFLR---SANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            N    +  EF R   +  K  E +++  T    +  V   SE  +    +  G      
Sbjct: 445 FNIDFFDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEEVRVGDYW--- 501

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPA 462
             S+ +   +  F ++T ++++    N    +  + +D + E + +      R+  +N A
Sbjct: 502 --SDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLSTSRVLYTNRA 559

Query: 463 FRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAI----ITSFDDERKSLQGT 517
           FR L+    + L   T   RNI     +Y N  +  +   +I      +   E K +  T
Sbjct: 560 FRELFGISSDVLGVTTQKYRNIL--VKKYINNLNIGEREKSIHIVNENNHIKEVKMISRT 617

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L           I  L             +S R ++AL ++     + D++K  F  ++S
Sbjct: 618 LYFGQKRSRVRIIKDLS---------VQRESERLKKALIKQR----QYDQMKMEFYANIS 664

Query: 578 YELRSPLTNIIGFTDLLKT----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
           +EL++PL NI     L++      K+        ++++    +   LL L+++I++++ V
Sbjct: 665 HELKTPLNNIYSSVQLIENLYKKGKIIDFQDILKEHIKITKQNMFRLLRLIDNIINISQV 724

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
            + I K+      + D+   +  SI++      I +   +D +      D + + +I   
Sbjct: 725 KSDIYKIKAVNFDIIDITERIVTSISSYAKSKGIDLIFDTDEETVMVGLDPESIERIILN 784

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QR 751
           ILSNA+ F+ +G  +++   + +      +K+ G  I ++    +FNRF    + G    
Sbjct: 785 ILSNAIKFTLEGGEILVGIYKKDETVEIIIKDTGVGIDKEKLNDIFNRFKQIENSGISNE 844

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            G G+GL + +S I +  G + I S     T +    P KE
Sbjct: 845 FGSGIGLCLTKSLIEIQNGKIYIDSKVGEGTNVKVIFPIKE 885



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 103/295 (34%), Gaps = 33/295 (11%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           ++ +     + L  +     + D +  + + N  F + +  D+       +  ++L F++
Sbjct: 270 IDQRKELLRQALDTIPNVWIVTDYDFNISYTNNKFKDEFSKDMN------NYYKILTFIK 323

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
              K+ E+L  K +  +I  + K  E +   + L        +  +      +    ++T
Sbjct: 324 EDEKVAEKL--KKFDNDISIIDKLVELNDKIYLLS-------LSNNKDESNYLISLNDIT 374

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-----RIKLSNPAFRSLWKT-----E 470
            ++ ++ +   + K     I ++   + V   +G     ++   N  +   +K       
Sbjct: 375 NEIKIDEEIRNINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCVSSDLV 434

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLE 527
           +  L       NI    +R +   +      A I S++D    +   +   S+    V E
Sbjct: 435 DMTLEQYFETFNIDFFDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEE 494

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS-----FVQHVS 577
             +    +   +   +   D  +    L   NE     +++ +      F++ +S
Sbjct: 495 VRVGDYWSDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLS 549


>gi|255100518|ref|ZP_05329495.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-63q42]
          Length = 912

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/641 (18%), Positives = 245/641 (38%), Gaps = 71/641 (11%)

Query: 193 SVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEG---------IVFQKAIGESRK 242
            + +   D++   VW   D   +I + N  +K     +          I   + + E  K
Sbjct: 275 ELLRQALDTIPN-VWIVTDYDFNISYTNNKFKDEFSKDMNNYYKILTFIKEDEKVAEKLK 333

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
            F  +I          +K +  ++S  +  +N    +  + N      I ID      + 
Sbjct: 334 KFDNDISIIDKLVELNDKIYLLSLSNNKDESNYLISLNDITNE-----IKID----EEIR 384

Query: 303 DQLTHTYEILHNLTVAIAIFDQNR-----YLQFHNRSFVELWE----------IDLAFLA 347
           +       I+ N+   I +           +   N+ + + ++          ++  F  
Sbjct: 385 NINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCVSSDLVDMTLEQYFET 444

Query: 348 TNPSNDELLEFLR---SANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
            N    +  EF R   +  K  E +++  T    +  V   SE  +    +  G      
Sbjct: 445 FNIDFFDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEEVRVGDYW--- 501

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPA 462
             S+ +   +  F ++T ++++    N    +  + +D + E + +      R+  +N A
Sbjct: 502 --SDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLSTSRVLYTNRA 559

Query: 463 FRSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAI----ITSFDDERKSLQGT 517
           FR L+    + L   T   RNI     +Y N  +  +   +I      +   E K +  T
Sbjct: 560 FRELFGISSDVLGVTTQKYRNIL--VKKYINNLNIGEREKSIHIVNENNHIKEVKMISRT 617

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           L           I  L             +S R ++AL ++     + D++K  F  ++S
Sbjct: 618 LYFGQKRSRVRIIKDLS---------VQRESERLKKALIKQR----QYDQMKMEFYANIS 664

Query: 578 YELRSPLTNIIGFTDLLKT----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
           +EL++PL NI     L++      K+        ++++    +   LL L+++I++++ V
Sbjct: 665 HELKTPLNNIYSSVQLIENLYKKGKIIDFQDILKEHIKITKQNMFRLLRLIDNIINISQV 724

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
            + I K+      + D+   +  SI++      I +   +D +      D + + +I   
Sbjct: 725 KSDIYKIKAVNFDIIDITERIVTSISSYAKSKGIDLIFDTDEETVMVGLDPESIERIILN 784

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QR 751
           ILSNA+ F+ +G  +++   + +      +K+ G  I ++    +FNRF    + G    
Sbjct: 785 ILSNAIKFTLEGGEILVGIYKKDETVEIIIKDTGVGIDKEKLNDIFNRFKQIENSGISNE 844

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            G G+GL + +S I +  G + I S     T +    P KE
Sbjct: 845 FGSGIGLCLTKSLIEIQNGKIYIDSKVGEGTNVKVIFPIKE 885



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 103/295 (34%), Gaps = 33/295 (11%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           ++ +     + L  +     + D +  + + N  F + +  D+       +  ++L F++
Sbjct: 270 IDQRKELLRQALDTIPNVWIVTDYDFNISYTNNKFKDEFSKDMN------NYYKILTFIK 323

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
              K+ E+L  K +  +I  + K  E +   + L        +  +      +    ++T
Sbjct: 324 EDEKVAEKL--KKFDNDISIIDKLVELNDKIYLLS-------LSNNKDESNYLISLNDIT 374

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-----RIKLSNPAFRSLWKT-----E 470
            ++ ++ +   + K     I ++   + V   +G     ++   N  +   +K       
Sbjct: 375 NEIKIDEEIRNINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCVSSDLV 434

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLE 527
           +  L       NI    +R +   +      A I S++D    +   +   S+    V E
Sbjct: 435 DMTLEQYFETFNIDFFDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEE 494

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS-----FVQHVS 577
             +    +   +   +   D  +    L   NE     +++ +      F++ +S
Sbjct: 495 VRVGDYWSDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLS 549


>gi|119476961|ref|ZP_01617242.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2143]
 gi|119449768|gb|EAW31005.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2143]
          Length = 895

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 147/314 (46%), Gaps = 14/314 (4%)

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL---EYSIIPLPNAQTMLTFV 543
             +  NE D   L +    +   E K+L   +  L+ SV    E     + N+ T     
Sbjct: 209 LEKTVNELDSGRLSSRAEVAGPSETKALARGINRLARSVAQSQEQLATKVENS-TRRVVT 267

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            +    +  RAL +  +AL+ A   K+ F+  +S+ELR+PLT ++GF+ LL  SK+   N
Sbjct: 268 AMDALSKKNRALEKTQQALKLASTAKDDFLAKMSHELRTPLTTVVGFSRLLNQSKM---N 324

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           SKQ +Y + I+ ++ +LL+ +N++LD + + +  + +      L + +  +    A +  
Sbjct: 325 SKQVEYSDNITVAAELLLDTINNMLDFSKLQSSAVSIENIKFDLREAMEGLVAMHAYQAE 384

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGD 718
              + + +I D  +   +  D  R+ QI + +LSNA+ F+ +G  V+    +K   D+G 
Sbjct: 385 STGLDLILIIDRNIPRLLLGDPTRIKQIVNNLLSNAVKFTKQGEVVLRVSLMKGENDDGS 444

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V ++G  + E     +F  F        RR  G GLGL I +    L GG + I+S
Sbjct: 445 LSIEVIDSGIGMDEKSQARLFQPFTQADDTITRRFGGTGLGLVICKQLAELMGGDIVINS 504

Query: 777 SDEGVTTINCRIPS 790
                T +   +P 
Sbjct: 505 DLGVGTCMTVTLPL 518


>gi|119470180|ref|ZP_01612946.1| sensor protein LuxQ [Alteromonadales bacterium TW-7]
 gi|119446601|gb|EAW27875.1| sensor protein LuxQ [Alteromonadales bacterium TW-7]
          Length = 602

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 146/336 (43%), Gaps = 15/336 (4%)

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
                  ++L  G  I +I     +     + W  F  ++   +D   + +  +E   + 
Sbjct: 139 ETIGNVYDQLFIGHKIEHIITNNEK--QNIEKWQQFNKLVEEHND-FHNFEFEVEADKNF 195

Query: 525 VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            +  S  PL N        M    N+T S + E  L  +     +A + K+ F+  +S+E
Sbjct: 196 WVILSGKPLYNKLGHFLGYMGLAKNITISKQREFELQAQTLKAEEASQTKSKFLSVMSHE 255

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++G  +LL  ++   L  +Q Q V Y ++S+ IL  L+ D+LD + +++G + 
Sbjct: 256 IRTPIHAVMGMIELLLDTE---LTPEQQQLVNYANSSTEILYGLITDVLDFSKIESGTVS 312

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNA 698
                  +  L   +          ++I      D  +    V D+ RL Q+   I+SNA
Sbjct: 313 CLKKPFDIKLLTENIVGQFNIIEKSDDILFTTHIDESIPQYVVGDQYRLGQVLFNIMSNA 372

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
             +++ G  + L     N   +F VK++G  I +     +F  F        R   GVGL
Sbjct: 373 FKYTTHG-QINLNVVLQNERLVFEVKDSGIGIAKKHLDLIFKPFSQVNDSINRKSEGVGL 431

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLSI ++ + + GG +++ +     +T    IP +E
Sbjct: 432 GLSISKNLLGIMGGEITVDTQLGLGSTFTISIPFEE 467


>gi|156743358|ref|YP_001433487.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234686|gb|ABU59469.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 899

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/363 (21%), Positives = 144/363 (39%), Gaps = 24/363 (6%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +  +    +   ++ +++GV V      I + N A   +    + +         I    
Sbjct: 541 RVQSEALRRRAILESIADGVIVLDRQRYIVIVNRAAEQMLNMHDWQFVR-RSFSEI---- 595

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 +   ++F+   T   +  +          D VL  S  P+   +          
Sbjct: 596 -PLVRVNVRHEVFSENGTGHREHFR--------FGDRVLSLSSAPVITGEGYQIG----- 641

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E  +     A    D  K  F+  VS+ELRSPLT I G+ DLL    +G L+  Q 
Sbjct: 642 ----EVVVLHDISAEAAVDRAKTDFIATVSHELRSPLTVIYGYVDLLLRGLVGELSGDQY 697

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +E +     ++ N+V +++ +A+++A  ++ + +   +  L++E    +        +
Sbjct: 698 DLLEAVRNRVELMNNIVKNVILVASIEANTLQTDLAPQDVRRLIDETIAPMRKAFERKGL 757

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            + V +   L    ADR++L+ I  +++ NA  ++ +G   I    RD+G     V + G
Sbjct: 758 TLTVNTPDDLPPVRADREQLMIILGQVIDNARRYTPQGEVAITAHRRDDGMVQIDVADTG 817

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             IP D    +F RF          RG GLGL I    +  HGG V   S     +T + 
Sbjct: 818 PGIPADQMPRLFTRFFRVEGNNSPERGSGLGLVITRQLVERHGGKVWAQSEVGRGSTFSI 877

Query: 787 RIP 789
            +P
Sbjct: 878 ALP 880



 Score = 38.4 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            V  +      IL ++   + + D+ RY+   NR+  ++  +   +     S  E+    
Sbjct: 541 RVQSEALRRRAILESIADGVIVLDRQRYIVIVNRAAEQMLNMH-DWQFVRRSFSEI---- 595

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-----GTIW 414
                    L     +  +FS  ++   H++ +   + + L +       G     G + 
Sbjct: 596 --------PLVRVNVRHEVFS--ENGTGHREHFRFGD-RVLSLSSAPVITGEGYQIGEVV 644

Query: 415 MFENLTVQVDLETK 428
           +  +++ +  ++  
Sbjct: 645 VLHDISAEAAVDRA 658


>gi|116494442|ref|YP_806176.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
 gi|116104592|gb|ABJ69734.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
          Length = 555

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 151/374 (40%), Gaps = 28/374 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q  L  K           ID+L  GV +   D  + L N A   L              
Sbjct: 203 EQAHLREKVAVRQSSFDRLIDNLPLGVMLIDTDKDVILHNHAMSQLLGH----------- 251

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I      Y ++   + L   I  +F  E+   Q    L +   ++ S+IPL    + L
Sbjct: 252 -QIPQPRHSYLDDVKTYALARMIEHTFRHEKTHHQELTILTTQKSVDASVIPLNQGISRL 310

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +           +      LR+ ++++  FV +VS+EL++P+T I GF + L      
Sbjct: 311 QVL----------VILYDVTYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLGGAKN 360

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
              +   +++  I   S  L  L+NDIL L+  D+       +++ L  L+++   ++A 
Sbjct: 361 D-PATLDRFLGIIYDESKRLTQLINDILTLSRPDSNQNV--AASVALKKLVDDALHNLAK 417

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            + +  +R++V     L   V D ++L QI   +L+NA+ ++     V + A   +    
Sbjct: 418 VIQDKQVRVEVAITPDLL-VVTDERKLTQIVRNLLNNAVFYNRLAGHVTISAQVVDHQLS 476

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  I E     +F RF            G GLGL+IV   +    GHV++ S  
Sbjct: 477 LAVADTGIGISETEQARIFERFYRVDKARSRHNGGTGLGLAIVAELVKSMDGHVAVHSQV 536

Query: 779 EGVTTINCRIPSKE 792
              +T    +P  E
Sbjct: 537 GVGSTFTVTLPVGE 550


>gi|313113960|ref|ZP_07799516.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623723|gb|EFQ07122.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 780

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 125/257 (48%), Gaps = 9/257 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +       +  +A+    E  ++  +A + K  F+ ++S+++R+P+  IIG T L+K   
Sbjct: 353 IHLTQVNDELRQAQDIAAEALQSAERASKAKTDFLANMSHDIRTPMNAIIGITTLMKNEL 412

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 K ++++  +  S  +LL ++NDILD++ +++G   LN   + L   ++++   I
Sbjct: 413 HQP--EKLAEHLGKLENSGQLLLGIINDILDMSRIESGKTTLNVEKMNLPQQISQLDSII 470

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
             +  +      V +  +  + +AD  RL ++   ILSNA+ ++  G  +  +       
Sbjct: 471 RQQAGQRRQTFTVNTHLQHENVLADPNRLNRVLMNILSNAVKYTPTGGHIRFEVDELPRN 530

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                + F V+++G  + +   K++F+ F      G  +  G GLG++I ++ ++L GG 
Sbjct: 531 EHYARYRFVVQDDGIGMSKAYQKTLFDPFTREERSGTNKVQGTGLGMAITKNIVDLMGGS 590

Query: 772 VSISSSDEGVTTINCRI 788
           +++ S+    T     +
Sbjct: 591 INVESTTGKGTRFEVVL 607


>gi|284035078|ref|YP_003385008.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
 gi|283814371|gb|ADB36209.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
          Length = 1066

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 108/578 (18%), Positives = 215/578 (37%), Gaps = 42/578 (7%)

Query: 240  SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV------RVLNSFGEAGIAI 293
                F ++++  +      E  F   + +   G+ +  K            S    G+  
Sbjct: 505  DLAFFTDKVQAIIQKQQPFEIEF--RIISPIDGSTRYMKADGLVLQNESGLSDRMIGVLR 562

Query: 294  DVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            D + +   +  L         ++ +L+  +   D      + N +    WE+   F    
Sbjct: 563  DRTAKRQADHALRVSEQRYRSLVDHLSAVVFQTDAAGMWTYLNPA----WEVITGFSVEE 618

Query: 350  PSNDELLEFL--RSANKLPEQLNW--KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                  L+F+      K   Q ++  ++ KE +  V +    HKD  +        V   
Sbjct: 619  SLGRFFLDFIVADDQPKSTSQFDYIVESHKEVLKQVIRY--IHKDGGYRWMEVFAQVSRN 676

Query: 406  SNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI-KLSNPAF 463
                  G      ++T +   E       +   E  +++ E   +   +  +    NP F
Sbjct: 677  QQLEITGVTGTLTDITDRKQAEEALIESERRFREIAENVDEMFWIRDINSPVFLYMNPVF 736

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-----SFDDERKSLQGTL 518
                      L     I       +R   E D   + AA I+     +F        G+L
Sbjct: 737  ELYSGLTVEALYEDPLI------FARSIIEEDRAAVVAAFISNEPKSTFLFRIIHPDGSL 790

Query: 519  ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
              ++  +   +       + +    +VT ++  E+ L E     R  + +K  F+   S+
Sbjct: 791  RWINARIFLLTDEDGVPVRRLGVATDVTTAIEKEQILEESLAKERALNALKTQFITTASH 850

Query: 579  ELRSPLTNIIGFTDLLK----TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            E R+PL +II   +L+K           N+  +++V  IS     L +L+ D L L+ ++
Sbjct: 851  EFRTPLASIISSVELIKYYADLEDRSEANTLINRHVLSISKQVMALTDLIADTLTLSKLE 910

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
             G +++      +  L  E+  +      E+  ++ +   G       D++ +  + + +
Sbjct: 911  EGKIQIQVEPTDVVALTEELI-AFNFSNREDKRQVGLDVTGAPVPVSVDKKLMAHVLTNL 969

Query: 695  LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
            LSNA  FS+    V ++  R++  F+ SV + G  IP      +F +F   ++    +G 
Sbjct: 970  LSNAFKFSTTSPKVQIRFKRES--FLISVIDQGIGIPRKDLPHLFGKFFRASNATHIKGT 1027

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGLSI   +I L  G + I+S++   TT    +P  +
Sbjct: 1028 GLGLSICLEYITLQNGSIDIASTEGVGTTFTIALPIHK 1065



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 97/328 (29%), Gaps = 66/328 (20%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDF------LVWHRDQ--AGDILWANISYKKNT--ETE 229
           +T  +   L+ +  + + + D+          +W          L +N      T  +++
Sbjct: 150 DTNQQSGTLAENNQLLQTIIDTSPTSLGLLRPIWQEGAIVDFRALISNPQSVSITGLDSD 209

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS--YKIVRVLNSFG 287
            ++ +  +    +     +  +M+      +     +       +    + +VRV    G
Sbjct: 210 TLLTRSMLTLFPQFLPNGVFAKMVDVVLTGEAQRFQMMDELAPGSFWGDFSLVRV---GG 266

Query: 288 EAGIAI-DVSKEITVNDQLTHTY----------------------EILHNLTVAIAIFDQ 324
           +   ++ D+++   V ++L                           IL  + + +A  D 
Sbjct: 267 DILFSVNDITRIKQVEEELRTANLELEQRVARRTAEVRQLSALQGAILKYVGLGVAATDT 326

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDEL--------------LEFLRSANKLPEQLN 370
              +Q  N +   +       L    +   L              LE   +A +  E + 
Sbjct: 327 KGIIQLVNPALEAMTGYRADELVGQRTTGSLREPVLHQQQLDQLTLELGEAAGQGEEVVA 386

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQV 423
               + N   +       ++T     G+ + V+ T        N   G + +  +++ + 
Sbjct: 387 RYVARHNFLRL-------ENTLLTKEGRVIPVLSTVTGLYDEQNELMGYVDINTDISYRK 439

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFG 451
            +E       +           G+  + 
Sbjct: 440 TVEEALMQAGQRSQLATKAGKLGIWEWN 467



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 50/170 (29%), Gaps = 31/170 (18%)

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           +      N   V +  +D   L T        +FL +                +  V  +
Sbjct: 190 DFRALISNPQSVSITGLDSDTLLTRSMLTLFPQFLPNGVF-----------AKMVDVVLT 238

Query: 385 SETHKDTW--HLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT----------- 431
            E  +      L  G            G  ++   ++T    +E +  T           
Sbjct: 239 GEAQRFQMMDELAPGSFWGDFSLVRVGGDILFSVNDITRIKQVEEELRTANLELEQRVAR 298

Query: 432 -------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
                  L  +QG  + ++  GVA     G I+L NPA  ++     + L
Sbjct: 299 RTAEVRQLSALQGAILKYVGLGVAATDTKGIIQLVNPALEAMTGYRADEL 348



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 102/294 (34%), Gaps = 31/294 (10%)

Query: 42  ILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQ 101
           I ++R R +  +  +            +    +++ + +   + W   +   E+I     
Sbjct: 558 IGVLRDRTAKRQADHALRVSEQRYRSLVDHLSAVVFQTDAAGM-WTYLNPAWEVITGFSV 616

Query: 102 RIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND----CAIKIEG 157
              + +   D +  ++  +     +     E      +    V    +       +++  
Sbjct: 617 EESLGRFFLDFIVADD--QPKSTSQFDYIVE---SHKEVLKQVIRYIHKDGGYRWMEVFA 671

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDI-L 216
           +VS +   L I  + G  +++ +     + L      F+ + +++D + W RD    + L
Sbjct: 672 QVSRNQQ-LEITGVTGTLTDITDRKQAEEALIESERRFREIAENVDEMFWIRDINSPVFL 730

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL------E 270
           + N  +    E    +  +A+ E   +F   I +   ++        E  ST        
Sbjct: 731 YMNPVF----ELYSGLTVEALYEDPLIFARSIIEEDRAAVVAAFISNEPKSTFLFRIIHP 786

Query: 271 HGNNKSY--KIVRVLNSFGE----AGIAIDVS---KEITVNDQLTHTYEILHNL 315
            G+ +    +I  + +  G      G+A DV+   ++  + ++       L+ L
Sbjct: 787 DGSLRWINARIFLLTDEDGVPVRRLGVATDVTTAIEKEQILEESLAKERALNAL 840


>gi|298527820|ref|ZP_07015224.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511472|gb|EFI35374.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 375

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 155/366 (42%), Gaps = 26/366 (7%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-----------AATCSR 489
           +H +  +     DGRI+ +N    +L   +         I +                  
Sbjct: 16  EHAAIILMTLDVDGRIQQANRFTHNLVGKDVTGRLLSEVIVDFTGSFDLQNALQQEDEQH 75

Query: 490 YYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            +N +    L       F ++   +   G L  L    L  +++ L N           +
Sbjct: 76  LFNVNSHSGLPQTFYFRFMEQNGKILAVGELNHLETEELRRNLVQLNN-----------E 124

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
                R L +KN  L K +E+KN F+   +++LR+PL  I   ++ L      SL+ +  
Sbjct: 125 FSNLNRELQKKNIELTKLNELKNHFLGMAAHDLRNPLGAIRNLSEFLLEEARDSLSDEYI 184

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q++E I  SS  +L+L++ +LD+A ++AG ++L++ +  L  L+  V         +  I
Sbjct: 185 QFLELIHTSSNFMLSLLDQLLDIARIEAGKLELDFQSTDLISLIKSVVDINKILAEKKKI 244

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +I++     +     D  ++ Q+   +LSNA+ FS +G+ + +           +V + G
Sbjct: 245 QIRLEHFETIPYVELDSMKIEQVMHNLLSNAIKFSPEGNLIKVHVFLSGEHVTVAVTDKG 304

Query: 728 SSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPE+  + ++  F   + +     +  GLGL+IV   I  H G + + S  +  TT  
Sbjct: 305 PGIPEEDIQKLYQPFTKTSVKTPEGEKSTGLGLAIVHKIILGHMGKIWVESKVDQGTTFF 364

Query: 786 CRIPSK 791
             +P K
Sbjct: 365 FSLPVK 370


>gi|120554687|ref|YP_959038.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120324536|gb|ABM18851.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 782

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 7/244 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  RAL    E   +    + +F+  +S+E+R+PL  ++G   L   S+    ++ Q   
Sbjct: 273 RGNRALVRAKEDAVRRARARANFLASMSHEIRTPLNGVLGMLGLALESEK---DAGQRNR 329

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E    +   LL L+NDILD++ V+AG + L      +  L+ E     A +     I +
Sbjct: 330 LEIALNAGESLLGLLNDILDISKVEAGKLSLESIPFSMRKLIEECATLHAQQARRKGINL 389

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
              +   L   F+ D  R  QI + +LSNA+ F+  G TV ++ +   G     V + G 
Sbjct: 390 VNETAPDLPEHFLGDPTRTRQILNNLLSNAIKFTDAG-TVKIRTSWSGGSLRLEVIDTGI 448

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  +    +F+ F        R   G GLGL++    +    G + + S +   T    
Sbjct: 449 GMSREGLHRIFSPFSQADTDTTRLYGGTGLGLTLCRQLVERMHGQILVDSKEGTGTHFTV 508

Query: 787 RIPS 790
            +P 
Sbjct: 509 TLPL 512


>gi|158312523|ref|YP_001505031.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
 gi|158107928|gb|ABW10125.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
          Length = 1400

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 141/297 (47%), Gaps = 20/297 (6%)

Query: 512  KSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +S + T EL S SV L+ +   L     +L   N  +   A   L EK E L  + + K+
Sbjct: 827  QSQRLTQELRSQSVELQRTNNELEEKAALLEEKNQ-EIELARIGLEEKAEQLALSSQYKS 885

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+ ++S+ELR+PL +++    LL  +   +L+ KQ  + E I ++ + LL L+NDILDL
Sbjct: 886  EFLANMSHELRTPLNSLLILAKLLADNPDHNLSQKQIDFAETIHSAGSELLGLINDILDL 945

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQ 689
            + V+AG M ++   +    L + V         E  +  ++ +++     FV D QR+ Q
Sbjct: 946  SKVEAGKMNVDAGPVRTAALCDAVAGVFGPTAEEKGLTFEISVTEDVPDEFVTDEQRIQQ 1005

Query: 690  IFSKILSNAMDFSSKGSTVILKAARDNGD--------------FIFSVKNNGSSIPEDMC 735
            +   +LSNA+ F+  G TV L  A  + D                F+V + G  +  +  
Sbjct: 1006 VLKNLLSNAVKFTDAG-TVRLDVAVASPDTPFVAPSLRSAPMVLSFAVTDTGIGVAAEKL 1064

Query: 736  KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F  F         +  G GLGLSI +    L GG +++SS     +T    +PS
Sbjct: 1065 RMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSSQIGQGSTFTLFVPS 1121


>gi|325262857|ref|ZP_08129593.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
 gi|324031951|gb|EGB93230.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
          Length = 581

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 125/262 (47%), Gaps = 10/262 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           NA  +L F+ +  S +  + +    E    A+  K+ F+  +S+E+R+P+  I G T + 
Sbjct: 170 NAGFLLLFIMLWVSGKHRKKVQMALETAEHANRAKSEFLSRMSHEIRTPMNGITGMTSIA 229

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K S       K    +  I  SS  LL+L+ND+LD++ +++G ++L      L ++   +
Sbjct: 230 KKSLNDP--GKLQDCLNKIELSSGYLLSLLNDVLDMSRIESGKLELECRPFNLTEVFERI 287

Query: 655 KQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 K  +  I ++    D ++ S + D  R+ Q+F  ++SNA+ F+  G  VIL+A 
Sbjct: 288 YVMFKQKAEDAGISLEFQCGDIEVPSVIGDNLRITQVFVNLISNALKFTPAGGRVILEAH 347

Query: 714 R-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFIN 766
                       F+V ++G  I E+  K +F  F    +    Q  G GLGL+I  +F+ 
Sbjct: 348 ETEIKDQEVSLQFTVTDSGIGINEEFQKRIFIPFEQEQSGTARQYGGTGLGLAICSNFVE 407

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L GG +S+ S     +     I
Sbjct: 408 LMGGQISVYSKTGEGSRFTVDI 429


>gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 1111

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 10/289 (3%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-TEKNEALR 563
           T+F+ ERK   G L       + +  +     + + T     + + +   L  ++N+ L+
Sbjct: 384 TTFNTERKDEIGRL------AISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQ 437

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            AD++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ I  S   L NL
Sbjct: 438 LADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVIPASQKYQLDIIIKSGQRLANL 497

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V+D+LD   +  G M +  S + L      V +     +    IRI       L +  AD
Sbjct: 498 VDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQVPADLKAVSAD 557

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F   +
Sbjct: 558 PQRLEQVLYNLIGNAIKYTSEG-KIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLI 616

Query: 744 SN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                    R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 617 QAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 665



 Score = 38.4 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E ++ +      E L +   AI    +++ ++F N +  +L++  L  L  + ++    E
Sbjct: 848 EASLLETQGRLLEQLESAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSAD----E 903

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
            +       +Q ++    +      + +    D   LP G  L V+   N  GG
Sbjct: 904 LIAPKYLTVKQPHYCGKIDIYIEDIRQN-IEADILKLPEGSGLDVMYIFNVGGG 956


>gi|166032915|ref|ZP_02235744.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC
           27755]
 gi|166027272|gb|EDR46029.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC
           27755]
          Length = 687

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 9/245 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E  R+A E K  F+ ++S+++R+P+  IIGF+DLL   K      K  +Y+  I
Sbjct: 295 ELKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLL--GKNLDNEEKVREYLGKI 352

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S  IL+ +++ +L++A +++    L      L++L   V   + + +    I   + +
Sbjct: 353 KSSGNILMRIIDQVLEVARIESETAILKTEAANLSELFYSVNTVLESAIQMKGIHCSIDA 412

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGS 728
           + +      D+ +L +I+  I+SNA+ ++  G  + +     N       ++F  ++ G 
Sbjct: 413 NVQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCEDTGI 472

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  +    +F+ F       + +  G GLGLSIV+SF+ L  G + + S     T    
Sbjct: 473 GMAPEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESEPGKGTKFTV 532

Query: 787 RIPSK 791
            +P +
Sbjct: 533 EVPLE 537


>gi|119504270|ref|ZP_01626350.1| Sensory transduction histidine kinase [marine gamma proteobacterium
           HTCC2080]
 gi|119459778|gb|EAW40873.1| Sensory transduction histidine kinase [marine gamma proteobacterium
           HTCC2080]
          Length = 819

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 124/262 (47%), Gaps = 13/262 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +   T V+          L E  E    A + K+ F+ ++S+E+R+P+  ++G  +LL  
Sbjct: 132 EAQRTIVSQLSEEELMAELQEAKEEAEVAAQAKSEFLANMSHEIRTPMNGVVGMIELLNL 191

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +K   L+++Q + ++ IS S   LL ++NDILD +  +AG +++      L   L    Q
Sbjct: 192 TK---LDAEQHEMLQTISDSGQSLLTIINDILDFSKFEAGKLEIEEIETTLVTFLESTAQ 248

Query: 657 SIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
           ++A    +N+++I V +  G     + D  R  QI   + SNA+ FS  G  V++KA R 
Sbjct: 249 TLAPSALKNDVQIIVHAAAGTPDQLMLDPVRTGQILINLASNAIKFSD-GGEVLVKAERI 307

Query: 715 -----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                D      SV + G  I  +  K++F  F        R   G GLGL+I +    +
Sbjct: 308 DPTHEDKTSLRLSVVDQGIGISAEAQKNLFQDFSQADSSTTRKYGGTGLGLAISKRLTEM 367

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG + + S     +T  C IP
Sbjct: 368 MGGTIGVKSCPGEGSTFYCEIP 389


>gi|29346647|ref|NP_810150.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338544|gb|AAO76344.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 641

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 6/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     G+   +Q
Sbjct: 397 DLLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GNTEEEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L  +V  S++    ++ 
Sbjct: 455 QTYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCRQVVASVSVS-RQSG 513

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKN 725
            +   +SD +      D QR+ Q+   ++SNA  F+ KG  T+      +    +FSV +
Sbjct: 514 NQFLFVSDYESFRMTTDIQRMQQVIINLMSNADKFTRKGQITLEFSVNEETEMAVFSVTD 573

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP++  K VF RF       Q  G GLGLSI +  ++   G + I S   G     
Sbjct: 574 TGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGDIWIDSEYTGGARFM 631

Query: 786 CRIPSK 791
              P K
Sbjct: 632 FSHPLK 637


>gi|302670459|ref|YP_003830419.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
 gi|302394932|gb|ADL33837.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
          Length = 1148

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           ++    K ++   ++     L  S++ +     ++ +      +   +   E+     + 
Sbjct: 144 AYIHPEKVIEHERQIFYIDAL-VSVVMVGIICCIMVWFVEWMFIEENKRAKEETRKFEEL 202

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ +N F   +S+E+R+P+ +I+G  +++   +  S   +  +    I  +  +LL LVN
Sbjct: 203 NKSQNRFFSSMSHEIRTPINSILGLNEIILRQEDAS--DEIKKDAGNIQGAGRMLLALVN 260

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           DILD++ ++AG M +      ++ L++EV   +  +  +  + + V  D  L      D 
Sbjct: 261 DILDISKIEAGKMDIIPVNYSVSSLISEVVNMMWLRAEQKGLTLNVEIDPTLPQELFGDE 320

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMCKSVF 739
            R+ QI   +L+NA+ ++++G TV L   +++        IFSV + G  I ED    +F
Sbjct: 321 VRIKQILVNLLNNAVKYTNEG-TVTLHIEKEDIKEEKVRIIFSVSDTGMGIKEDSIPYLF 379

Query: 740 NRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + F         +  G GLGLSIV+  + L  G +S++S     +     +
Sbjct: 380 DAFQRIDEEKNTKIEGTGLGLSIVKQLVELMDGEISVNSVYAQGSNFTVSL 430


>gi|213969639|ref|ZP_03397775.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|213925735|gb|EEB59294.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 1161

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L
Sbjct: 686 ERQTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQIL 745

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++
Sbjct: 746 QRD--TTTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDL 803

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++  A    E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V L+ +
Sbjct: 804 EKMFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGEVV-LRVS 862

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 IF + ++G  I  +  + +F  F          GVGLGL+I      L GG +S
Sbjct: 863 YRRETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALS 922

Query: 774 ISSSDEGVTTINCRI 788
           +SS+    T    R+
Sbjct: 923 VSSTPGEGTHFKVRL 937


>gi|71908504|ref|YP_286091.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848125|gb|AAZ47621.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 858

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 165/416 (39%), Gaps = 41/416 (9%)

Query: 397 GQTLHVIVTS--NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG-VAVFGPD 453
           G+ L  +     +P G    + +                +   ++ID    G +A+F  D
Sbjct: 170 GKWLFTLSRRIDHPDGRFAGIVQ--------TAMRADYFQNAFKSIDTGEHGSIAMFSSD 221

Query: 454 GRIKLSNPAFRSLWK------TEENRLSPGTHIRNIAATCS-----RYYN--ESDGWDLF 500
            R+    P    L          +  L  G  I +  A        R YN  + +   L 
Sbjct: 222 FRLVARYPILDELLGKPFELTEIQTGLDKGQRIGSYQAVSRTDGVTRLYNYRQLETLPLI 281

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSI---IPLPNAQTMLTFVNVTDSVRAERALTE 557
            A+  + +D  K  +    +   S L +     I +  AQ     ++  +   AE+    
Sbjct: 282 IALGMAPEDFLKGWKRKAWIYFISWLAFGAALSILIRLAQRRSRVIDKLNDQLAEQV--- 338

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                + A + K++F+ ++S+E+R+P+  IIG T +L+  K   +   Q + +  I+ ++
Sbjct: 339 --SQAKAASQAKSNFLANMSHEIRTPMNAIIGLTHMLRRDK---VTPAQGEKLIRIAGAA 393

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+++NDILDL+ ++AG ++L        ++L  +   +  +     I + V +    
Sbjct: 394 DHLLSVINDILDLSKIEAGKVELEAENFSPEEMLQRICSIVLLRAQAKGIELVVDAGELP 453

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPED 733
                D  RL Q     LSNA+ F+ KGS +    +LK    +    F V+++G  I  +
Sbjct: 454 ALLNGDVTRLGQALLNYLSNAVKFTEKGSIILRGNVLKETEKDVLVRFEVEDSGIGISPE 513

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               +F  F   +        G GLGL+I      L GG    SS+    +     
Sbjct: 514 KLAHLFTAFEQASASISRHYGGTGLGLAISRHIAMLMGGEAGASSTPGKGSIFWLT 569


>gi|300087390|ref|YP_003757912.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527123|gb|ADJ25591.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 479

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 119/253 (47%), Gaps = 10/253 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             ++ R   +      AL K+++ +   +  V++ELR+PLT I G  D +    L +   
Sbjct: 227 NDETGRLAESFNVMASALEKSEQSRKRLLADVAHELRTPLTVINGTVDAMMDGVLPTDE- 285

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              Q +  I   S +L  L+ D+ DL+  +AG +KL+ S I L DL+    +        
Sbjct: 286 ---QQLGTIKEESLLLTRLIADLRDLSLAEAGQLKLDKSVIDLGDLVCRKLEQFRLLAET 342

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FI 720
            NIR++  + G L S   D  RL Q+ + +LSNA+  +  G  V ++    + D      
Sbjct: 343 RNIRLECHNPGGLPSVNGDWVRLEQVLANLLSNALRHTPAGGEVSVRLTEASLDGSPAVA 402

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  +  +  K +F+RF        R   G GLGL+IV+  +  H G VS+ S+ 
Sbjct: 403 VAVSDTGEGMTPEDLKHIFDRFYRVEDSRSRDEGGAGLGLAIVKQMVTAHSGRVSVESAP 462

Query: 779 EGVTTINCRIPSK 791
              TT    +P++
Sbjct: 463 GRGTTFTVTLPAQ 475


>gi|227891179|ref|ZP_04008984.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
 gi|227867053|gb|EEJ74474.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
          Length = 461

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 165/372 (44%), Gaps = 28/372 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q  L  KY+   +     ++++  G+ V     R+ +SN   +  +  +    +      
Sbjct: 109 QNKLSKKYDKRKREYLSLLEYIDIGILVIDYKNRLTMSNELGKDFFDFDNEWKNQDY--- 165

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                   Y    D   L   +  + +D++K +   ++ +   ++E S I +P       
Sbjct: 166 ------QNYIYNLDVRKLIEQVKLTKEDKKKQIVLKIDTVQ-KIVETSAIYIPIDSKRYL 218

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            + +   + A++ +          ++ +  FV ++S+E+++P+T I GF++ L    L  
Sbjct: 219 IMLMLRDLTAQKEM----------EKKQLDFVGNLSHEIKTPITAITGFSETLLDGALDD 268

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                 Q++E I   ST L NLV+D++ ++ + + G   LN   + +  L+ +  Q  + 
Sbjct: 269 -KEVSKQFIEIIHDESTKLSNLVDDMITISRLNEHG--SLNIELVNIFKLVKDTLQLFSH 325

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDF 719
           ++ +  + +++  D +L S   D+ +L  I + ++ NA+ ++ +   + +K   D   ++
Sbjct: 326 EIEKKGLNVRIEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNEW 384

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F + + G  I +   + +F RF      H     G GLGL++V+  ++   G + + S 
Sbjct: 385 VFVISDTGIGISDKDKERIFERFYRVDKSHSKTVGGTGLGLAVVKESVDALSGRIKVKSQ 444

Query: 778 DEGVTTINCRIP 789
               TT    +P
Sbjct: 445 INKGTTFYVILP 456


>gi|222100696|ref|YP_002535264.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359]
 gi|221573086|gb|ACM23898.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359]
          Length = 473

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 157/380 (41%), Gaps = 40/380 (10%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + EN+ +  +LE  Y+ +       +++L EG+ V+  +G I+  N  F      EE   
Sbjct: 120 VLENVRLYRELEETYDYVNT----ILNNLPEGIFVYS-NGEIRFQNERFARENFPEEVMK 174

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                     +   +   E +  D F +I                         SI  L 
Sbjct: 175 KAMEISEEAISLGVQRTGEIESEDKFFSI------------------------TSIPLLY 210

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +T    +   +++ A + L    E L++ D +K  FV ++S+ELR+PLT I  +T+ +
Sbjct: 211 NGETQALTI--VENITASKEL----ERLKRIDRMKTEFVANISHELRTPLTAIKAYTETM 264

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S          +++E +   S  L NL+N++LD + ++   +++      + +LL   
Sbjct: 265 YNSLEELDTDTLKEFLEVVLDQSNHLENLLNELLDFSRLERKALQIKKEKTNICELLESA 324

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILK 711
             +I        +++ +           D  R+ Q+   +LSN + +S K      V + 
Sbjct: 325 VGAIKEFAASQGVKVFLEKKVPCFEAEVDPTRMKQVLLNLLSNGVKYSKKDEPEKYVKVV 384

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
             +D    +  V++NG  IPE   + +F +F            G GLGL+I +  + LHG
Sbjct: 385 LDKDENGILIVVEDNGIGIPEHAREKIFEQFYRVDSSLTYEVSGTGLGLAITKEIVELHG 444

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S +   +     IP
Sbjct: 445 GRIWVESEEGKGSRFFVWIP 464


>gi|284988897|ref|YP_003407451.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM
           43160]
 gi|284062142|gb|ADB73080.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM
           43160]
          Length = 957

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 9/244 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ER L    +   +A + K +F+  +S+E+R+PL  ++G TD+L  +    L  +Q  ++
Sbjct: 294 RERDLVAARDEAERAGQAKTAFLATMSHEIRTPLNAVLGLTDVLLAT---DLTDEQRGHL 350

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E ++ S   LL+L+NDILD + ++AG + L  +   L  ++ +V Q +A       + + 
Sbjct: 351 ETVAGSGDSLLSLINDILDFSKIEAGELDLEAAPFDLVGVVYDVAQLLAPTASGAGLDLL 410

Query: 671 VISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDF--IFSVKNN 726
           V   G      V D  R  Q+ + ++ NA+ F+S+G  V  L      G      SV + 
Sbjct: 411 VDVAGDGPWQVVGDGSRFRQVVTNLVGNAVKFTSEGHVVLRLTGTAAEGRLQCRLSVVDT 470

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F            G GLGL+I +      GG + + S     +T 
Sbjct: 471 GIGISPDQRHRLFRSFSQVDASVTRSYGGTGLGLAISQRIARAMGGDIQVHSELGVGSTF 530

Query: 785 NCRI 788
              +
Sbjct: 531 TVAL 534


>gi|163754231|ref|ZP_02161354.1| periplasmic sensor signal transduction histidine kinase [Kordia
           algicida OT-1]
 gi|161326445|gb|EDP97771.1| periplasmic sensor signal transduction histidine kinase [Kordia
           algicida OT-1]
          Length = 896

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 4/246 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +    L   NE L   D+ K+ F+  V++EL++P+T I   T+LL   +       +
Sbjct: 650 ELSQLSSKLKNVNEELVTKDKQKDEFLDTVAHELKTPITGIRAATELLMDDEDDMPKDMK 709

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +Q+++ I   S  L  L+N+ILD   ++ G + L+  T  L   + +   SI     + N
Sbjct: 710 NQFLKNILQDSDRLARLINNILDFEKLETGRLHLDLQTNDLQKTIKKAVASIQQIASKKN 769

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKN 725
           I I         +   D  R+LQ+ + +LSNA+ F   +   V +     NG+   +VK+
Sbjct: 770 ITIN-DKTAHAITIKYDEDRILQVLTNLLSNAIKFCPTEKGEVTIDFKLGNGEVEVTVKD 828

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP +    +F++F  + H+   +  G GLGL+I +  +  HGG +    + +   T
Sbjct: 829 NGKGIPAEDHNYIFDKFYQSKHQNTIKPQGSGLGLAITKQIVEKHGGKIWAKKAVKNGAT 888

Query: 784 INCRIP 789
           +   +P
Sbjct: 889 LVFTLP 894


>gi|28871222|ref|NP_793841.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854472|gb|AAO57536.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 1161

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 4/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT L    +    + ++AL +  EA   A+  K+ ++  +S+ELR+PL +I+GFT +L
Sbjct: 686 ERQTSLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQIL 745

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     +        +  I  SS+ LL+L+N +LD+A ++AG +KL  + I+  + L+++
Sbjct: 746 QRD--TTTPPHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDL 803

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++  A    E N+  ++  +G++   V  D +R+ QI   +L NA++F+  G  V L+ +
Sbjct: 804 EKMFAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDSGEVV-LRVS 862

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 IF + ++G  I  +  + +F  F          GVGLGL+I      L GG +S
Sbjct: 863 YRRETAIFDIVDSGIGIAPEQIERIFQPFERGGQTRHDNGVGLGLTITRMLTALMGGALS 922

Query: 774 ISSSDEGVTTINCRI 788
           +SS+    T    R+
Sbjct: 923 VSSTPGEGTHFKVRL 937


>gi|257790765|ref|YP_003181371.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257474662|gb|ACV54982.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 572

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 129/238 (54%), Gaps = 4/238 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  + L +    KN F   +S+ELR+PLT+I+ F  +L+   + SL++K    VE I
Sbjct: 320 ELKKALDRLSEETAYKNEFFAIMSHELRTPLTSILAFARILR--GVDSLDAKTRSAVEEI 377

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A++T+LLN+VN+IL ++  +A   +L    +   DLL  +++S+        I +   +
Sbjct: 378 EANATLLLNMVNNILTISKAEAHKNELVVEPVDFVDLLGFIRKSLEPVAKNKGIALTAKT 437

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +   +AD ++L +I   ++ NA+ ++  G  V ++A  D    + SV ++G  I E 
Sbjct: 438 DADVPVSMADWEKLRRIVENLVDNAIKYTHVGGRVDVRATFDGACIVVSVADDGMGIDEA 497

Query: 734 MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F R+         + RG GLGL++V+    LHGG VS++S+ +  +T   RIP
Sbjct: 498 DQEGIFERYRQAGQSPNRRYRGTGLGLAVVKELAELHGGSVSVASARKLGSTFTVRIP 555


>gi|171912784|ref|ZP_02928254.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 821

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 113/225 (50%), Gaps = 4/225 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++ K+ F+ ++S+E+R+P+  I+G++ +L      +L+      V  I  S   LL+L+N
Sbjct: 363 NQAKSEFLANMSHEIRTPMNAILGYSQILAREP--TLHPFHRDAVATILHSGDHLLHLIN 420

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRIKVISDGKLGSFVAD 683
           +ILDL+ +DAG M+L+ S   L   L +++     +  E    +R+++           D
Sbjct: 421 EILDLSKIDAGRMELSLSEFDLTATLRDLEGMFQQRCEEKQLGLRLELPVPDHPIMVRGD 480

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             +L Q+   +L+NA+ F+++G   +     D   + F V++ G+ I E++ + +F  F 
Sbjct: 481 EGKLRQVLINLLANAVKFTARGRVTLRVLPGDADVWRFEVEDTGTGISEELQERIFEPFQ 540

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                    G GLGL+I    + + GG +++ S     +  +  +
Sbjct: 541 QGGPTTIPGGTGLGLAIARKQMEIMGGSLNVRSEVGRGSCFSATL 585


>gi|229131904|ref|ZP_04260769.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
 gi|228651495|gb|EEL07465.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
          Length = 896

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 29/314 (9%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--------- 554
           I +   E +++   L++ S+  L+     L      L   N     R E A         
Sbjct: 419 IQTLLHESQAMTEELQVQSEE-LQTQAEELQMQAEELRTTNEQLESRTEEAEQKTTDLEI 477

Query: 555 ----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               L EK   + ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +  
Sbjct: 478 TKSELEEKASEILRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELA 537

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+ + 
Sbjct: 538 TVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAANMQQNFLHIAAQKNVELT 597

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NG 717
           +  SD     F  D +R+ QI   +LSNA  F+ KGS             + D       
Sbjct: 598 IADSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKD 657

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SVK+ G  I  +  + +F  F         +  G GLGLSI + F  L GG +++ 
Sbjct: 658 WMTISVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLE 717

Query: 776 SSDEGVTTINCRIP 789
           S+    +T    IP
Sbjct: 718 SNLGEGSTFTVYIP 731


>gi|153826223|ref|ZP_01978890.1| sensor histidine kinase [Vibrio cholerae MZO-2]
 gi|149739988|gb|EDM54163.1| sensor histidine kinase [Vibrio cholerae MZO-2]
          Length = 736

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 175/440 (39%), Gaps = 32/440 (7%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + ++W        +        +  P    + +I  S P           T+ + LE   
Sbjct: 149 DRESWYLAAEREAEGLYFWSPVYVDPY-TRVEMITVSTPYYRNGQFAGVATIDLSLE--- 204

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            +L++    T +  + GV +    G +++ +  FR+      +  S G     I    + 
Sbjct: 205 -SLIQFVAATAEQYNLGVNLKDAFG-VEVVSHNFRTYDNALVSYYSFGEFNWQIEVVNAN 262

Query: 490 YYNESDGWDLFAAIITSFDDER------------KSLQGTLELLSDSVLEYS---IIPLP 534
            + +   +DL   I                          + L++  V E     II + 
Sbjct: 263 QHVDEIIFDLIINIEKGLMPILLLCVMVGYFLISHYWIRPIVLIAKKVSESREGEIIDIR 322

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +    +    L  +    + + + K++F+  +S+E+R+P+  ++G   +L
Sbjct: 323 YKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQIL 382

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   L SKQ Q++  +  S   +++L+N+ILD + ++ G  +L++S   L  ++  +
Sbjct: 383 LKDE---LTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSI 439

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K   ++   E  ++ ++ S+   G  +  D+ RL QI   +LSNA+ F+  G  V +  +
Sbjct: 440 KSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAG-FVAIGLS 498

Query: 714 R----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
                +    I  V++ G  I ++    +F  F        RR  G GLGL+IV+    L
Sbjct: 499 EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAEL 558

Query: 768 HGGHVSISSSDEGVTTINCR 787
             G+V + S     +    R
Sbjct: 559 MNGNVLVQSEVGQGSCFKVR 578


>gi|282895906|ref|ZP_06303946.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
 gi|281199151|gb|EFA74020.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
          Length = 428

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 118/250 (47%), Gaps = 2/250 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  +  R  + +  +N  L +   +K+ F+  +S+ELR+P+  IIGF  +L   K   L+
Sbjct: 148 NNEELERQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLS 207

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           S Q+  ++ I  ++  L  L+N++LD + +D+G + L      L+ ++N     I + + 
Sbjct: 208 SVQTDILKRILNNAKNLSMLLNEVLDFSKIDSGRLALKPEIFDLSKVVNHAVSEIRSLVE 267

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + + V  + +      D  R+ QI   +LSNA+ F+ +G   +            S+
Sbjct: 268 AKKLSLSVEIELENTLVFNDPMRVSQILINLLSNAIKFTERGCIWVRVTEPSKNRIAISI 327

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I    C+ +F  F         +  G+GLGL+I++S + + GG + + S     
Sbjct: 328 RDTGIGISSQDCEHIFEAFRQVDQGISRKYPGMGLGLAIIDSLVKIMGGKIILESQLAVG 387

Query: 782 TTINCRIPSK 791
           +     +P +
Sbjct: 388 SLFGVELPRQ 397


>gi|295688200|ref|YP_003591893.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430103|gb|ADG09275.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 638

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 167/479 (34%), Gaps = 42/479 (8%)

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
           R +   N ++ +               D L   L     L +    +     + +  +++
Sbjct: 35  RTIARVNPAWTQSTGWSPE--------DSLGRHLHDFFHLHDTPIIQDIGRILEARGQAT 86

Query: 386 ETHKDTWHLPNGQTLHVIVTS--NPRGGTIWMFENLTVQV------DLETKYNTLVKVQG 437
             H+       G  L V   S     G  + + ++ T +           + N L++   
Sbjct: 87  GEHR--LARKGGGWLWVRSQSKVLEGGDLLIVLQDRTEERARNIARQQAERSNELLRTAT 144

Query: 438 ETI---DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                  +  +G+ VF  D               ++    +    +  +  +      + 
Sbjct: 145 GIFVWRFNPRKGIYVFDQD-----------IPTPSQPEGGARTMTVSEMTQSIHPEDRDR 193

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
               L   + T   +  +     L+  +                     +V    +    
Sbjct: 194 AWEALSHTLRTG--EHVEIDYRYLDPPTGLWAHIHSAWRGVRGASPAAWDVIGISQNVTE 251

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  +A   A + K+ F+ ++S+E+R+P+  ++G   LLK  +   L++   + +    
Sbjct: 252 LVEARDAALAAADAKSQFLANMSHEIRTPMNGVLGVLHLLKKER---LSADGRRLLNEAL 308

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
               +L  L+NDI+D++ ++AG + L        +LL  V + +  +     + ++V + 
Sbjct: 309 DCGEMLSQLLNDIIDVSRIEAGKLDLAAEPTEPAELLRGVAEMLRPQAEAKGLSLRVETA 368

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIF--SVKNNGSSIP 731
           G LG  + D  RL Q    +L NA+ F+  G  V  L   R+         + + G  I 
Sbjct: 369 GDLGWAITDPLRLRQALFNLLGNAVKFTLAGGVVARLTGRREGDRLRLRYEIADTGVGIA 428

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF        RR  G GLGL+I      L GG V   S     +T    I
Sbjct: 429 PEAAAKLFERFRQGDGSTTRRFGGSGLGLAICRRLAELMGGDVGFESVLGKGSTFWIEI 487


>gi|221210649|ref|ZP_03583629.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221169605|gb|EEE02072.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 1001

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 125/802 (15%), Positives = 273/802 (34%), Gaps = 120/802 (14%)

Query: 25  AVFGTIAGMLLTTIIPIILLI---------RQRNSLAKKVNETYSFLSEICDQLSKYHSL 75
            ++G  A + +  +   +L++         R R++   +  E ++ L          ++L
Sbjct: 32  LLYGGGAAVTVFILACAVLIVLLDVSDFLARARSAFLGREAELHAELQV-------ANAL 84

Query: 76  LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
           LT +     +++  D                                   +L  A  +L 
Sbjct: 85  LTHHADSIEMFERTDPRA--------------------------TPAQLRRLDDAHGRLI 118

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKC-------KKL 188
             G++        +   +    R  G+ A+ R ++L    +++   ++           L
Sbjct: 119 VSGRA-----GLPSTAVLADLTRDRGAAAYSRYVALLFQQTDMIAVSMPHTINAGLSAYL 173

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
                 F  +              G +     +   +     +  ++ IG   +      
Sbjct: 174 IGTHGDFIGIVGVQPV--------GRLARRLDAIDMHALIRSVEPRRGIGVPLRTIDGRD 225

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
              + +                      +++ R +       IA  V   I    Q+   
Sbjct: 226 DALLDTRDDTLLG------------RPVWRLSRPVRDASGQPIAWLV---INTRAQVGTI 270

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF----LATNPSNDELLEFLRSANK 364
            +       A A+ D    +         L E  LAF         +   +       ++
Sbjct: 271 MKP-DYADDAHALVDARGTVAVGAPVEAALVERALAFARAPADVRAAVQRVGTRFVIGDR 329

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
           LPE        + +F    S  +  +   +P G T    + +        +  +   +  
Sbjct: 330 LPE-------SDLVFVTTFSWRSIVEALAVPLGVTAGAALFAIAALWLAIVAFD---RRA 379

Query: 425 LETKYNTLVK------VQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPG 477
           L   Y   ++      +    I     G+A+    DG   +SN       +     L+ G
Sbjct: 380 LRPAYRRAIRLIESDALNRALIRTAPAGLALLSLADGDAIVSNETMARYER-----LASG 434

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                +     R Y E      +A ++T           T  ++++ ++      +    
Sbjct: 435 AP---LGKRLWRSYREQRDASGYAKVVTCELPIDPDRADTPHVVAN-IMRTRYRGVD--A 488

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T  ++T   + E+ L E   A   A++ K++F+  +S+E+R+PL  I+G  +L+  +
Sbjct: 489 LLCTLTDITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARA 548

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            L        + ++ I++SS  LL +++D+LDL+  ++  M +      + D+L+++   
Sbjct: 549 PLAPTE---RRRLDTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAF 605

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA 712
                    + ++     +L   +V D  RL QI S ++ NA+ F+ +GS  I    +  
Sbjct: 606 YRPLASAKGLELRCRVAPELADGYVGDPVRLRQIMSNLVDNAIKFTERGSVSIDAQRVVR 665

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
           +         + + G  IP D   ++F+ ++        +  G GLGL +      L  G
Sbjct: 666 SAGGARVEIRIADTGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHG 725

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            +++ S +   TT+   +P  E
Sbjct: 726 DLTVDSREGEGTTMCVTLPLPE 747


>gi|153806588|ref|ZP_01959256.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185]
 gi|149131265|gb|EDM22471.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185]
          Length = 660

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 11/245 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ LL  S   S   +  +Y  
Sbjct: 417 EIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLINSVEPS--EELQEYAN 474

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN--NIRI 669
            I  +S +LL L++D+LD++ +++G ++ NY      +L+   +  I         N  +
Sbjct: 475 IIQTNSNLLLQLISDVLDVSRLESGKLQFNYEWC---ELVTHCQNMITLTNRNKTTNADV 531

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNG 727
           ++    +      D  RL QI   +L+NA+ F+  G ++ L     ++    +FSV + G
Sbjct: 532 RLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYTVDKEKQCILFSVTDTG 591

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + IPED  + VF RF       Q  G GLGL+I +  I   GG + I    +G       
Sbjct: 592 TGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIWIDKDYKGGARFIFS 649

Query: 788 IPSKE 792
            P KE
Sbjct: 650 HPIKE 654


>gi|260772841|ref|ZP_05881757.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260611980|gb|EEX37183.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 578

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 125/268 (46%), Gaps = 13/268 (4%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +LE +I  + + + + + V +         L    +    A++ K+ F+  +S+ELR+PL
Sbjct: 172 LLERAINDIEHKEELQSLVRIKTH-----ELYIAQQQAEHANQAKSQFLAMMSHELRTPL 226

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             ++G  D+L+       N  Q   +E +  S+ +LL ++NDILDL+ +++G  KL    
Sbjct: 227 NAVLGLIDVLREDS----NRSQLDLLEQMENSAELLLVIINDILDLSRIESGHFKLQCHW 282

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           + L+  L               IR  V +       +  D  RL+QI   ++ NA+ F+ 
Sbjct: 283 VHLHKKLVHALSYHHKACVTKGIRFNVRTSICDHYEYWVDPVRLMQILFNVIGNAIKFTE 342

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
            GS V ++ +    + +  V++ G  I  +  + +F+ F+       R   G GLGL+I 
Sbjct: 343 AGS-VDVRLSTARNELVIHVEDTGIGIEPERIEHLFSPFIQADSSITRHYGGTGLGLAIT 401

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + L  G +S+SS     +    R+P
Sbjct: 402 KHLVELMKGTISVSSCLGQGSHFIIRLP 429


>gi|325859789|ref|ZP_08172919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
 gi|325482715|gb|EGC85718.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 121/242 (50%), Gaps = 5/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R    +     +A   K  F  ++S+ELR+PLT I    + +      +L+ +Q   +
Sbjct: 373 AYRTTVMRRHIEEEATTAKLQFFTNISHELRTPLTLIADPVEYIIHDP--NLSPQQRNML 430

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  +  +L  LV++ILD   +  G M+L+ S   L++ + +     AT   + +I ++
Sbjct: 431 QIVQRNVAVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHITLQ 490

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +     L    ADR +L +I   +LSNAM ++ +G  +   A+ +       V +NG  I
Sbjct: 491 LSVPSALP-MRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADKVKIMVSDNGCGI 549

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++    VF+RF   ++ G   G G+GL++V++F +LH G V++ S +    T    +P 
Sbjct: 550 AQNDLPYVFDRFYQASNAGH--GTGIGLALVKAFADLHHGEVTVESKEGEGCTFTVCMPL 607

Query: 791 KE 792
           ++
Sbjct: 608 RQ 609


>gi|317055666|ref|YP_004104133.1| multi-sensor hybrid histidine kinase [Ruminococcus albus 7]
 gi|315447935|gb|ADU21499.1| multi-sensor hybrid histidine kinase [Ruminococcus albus 7]
          Length = 1205

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 150/365 (41%), Gaps = 34/365 (9%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +TL   +   +D LSEG+     +GR++  N   R L+    +                
Sbjct: 225 LDTLELTREYVVDKLSEGLIAVDTEGRVRYFNEPARELYPQLAD---------------- 268

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                 +  D+    I   DDE  ++           LEY      N   +   ++ T+ 
Sbjct: 269 ---APEETLDIIGKAIE--DDEVITMGERKYTPCIEALEYEG---ENFGRLYRLIDDTEH 320

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                 L E++    KA+  K++F+ ++S+E+R+P+  ++G  +++      S   +   
Sbjct: 321 YNYMEQLREQSLIADKANRAKSAFLANMSHEIRTPINAVLGMDEMILRE---SGERQIIG 377

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y E I  +   LL+L+NDILD + V+ G M+L  +   L   +N++   I  +  +  +R
Sbjct: 378 YAEDIRNAGRTLLSLINDILDFSKVEQGRMELIPTQYELGSAINDLVNMIRPRADKKGLR 437

Query: 669 IKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSV 723
             V  D  +    V D  R+ Q    +L+NA+ ++ KGS          GD      F+V
Sbjct: 438 FDVKVDSGIPHMLVGDEIRVKQCALNLLTNAVKYTEKGSVHFEVGYEKTGDKSIKLRFTV 497

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I ++    +F+ F            G GLG+SI    + L G  + I+S     
Sbjct: 498 SDTGMGIKQENMDKLFSPFSRIEEGKNRSIEGTGLGMSITRQLLELMGSELEINSIYGKG 557

Query: 782 TTINC 786
           +  + 
Sbjct: 558 SVFSF 562


>gi|190574099|ref|YP_001971944.1| putative repetitive protein with two-component sensor and regulator
           motifs [Stenotrophomonas maltophilia K279a]
 gi|190012021|emb|CAQ45643.1| putative repetitive protein with two-component sensor and regulator
           motifs [Stenotrophomonas maltophilia K279a]
          Length = 1033

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 3/244 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L      K+ F+ ++S+ELR+PL + +    LL  +K G+L  +Q +Y 
Sbjct: 347 AQSQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTEEQVKYA 406

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S+  LL L+NDILDL+ ++AG ++L    +V + +L  ++++      +  + ++
Sbjct: 407 RAILSSNNDLLALINDILDLSRIEAGHVELADEVVVTDSVLQRLRETFEPMARQKGLALQ 466

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D    S  V D QRL QI   +L+NA+ F+  G   +   A   G   F V ++G  
Sbjct: 467 IEADALAPSQLVVDSQRLQQILKNLLANAVKFTEHGKVSLHVRAAGQGRIRFEVCDSGIG 526

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG + + S     +     
Sbjct: 527 IAREQLQVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIQVDSEPGRGSCFILE 586

Query: 788 IPSK 791
           +P +
Sbjct: 587 LPLQ 590


>gi|117919558|ref|YP_868750.1| hybrid sensory histidine kinase BarA [Shewanella sp. ANA-3]
 gi|117611890|gb|ABK47344.1| Hpt sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 935

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 132/320 (41%), Gaps = 12/320 (3%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I  +    ++         L   +I   D  ++ +      LS+   E          
Sbjct: 212 QPITEMVRVVAKIREGKLDARLEGNLIGELDLLKRGINAMAGSLSEYHDEMQQNIDQATS 271

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +   +    E  L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   L  +
Sbjct: 272 DLRETLEQIEIQNVE--LDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT 329

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+S Q  Y+  I  S+T LL ++NDILD + ++AG M L      L + L E    
Sbjct: 330 ---PLHSSQVDYINTIERSATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGETITL 386

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-R 714
           I+       + + V     +  +   D  R+ QI + ++ NA+ F+  GS  V L+   +
Sbjct: 387 ISGSAQAKGLELVVDIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQ 446

Query: 715 DNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
            +   +    V + G  I E+    +F  F        RR  G GLGL I +  +N  GG
Sbjct: 447 TDDQVVLRCDVIDTGIGIDENQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGG 506

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +  +SS +  +     +P 
Sbjct: 507 QIGFTSSVDKGSNFWFTLPL 526


>gi|254227023|ref|ZP_04920583.1| sensor histidine kinase [Vibrio cholerae V51]
 gi|125620459|gb|EAZ48833.1| sensor histidine kinase [Vibrio cholerae V51]
          Length = 1147

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 167/414 (40%), Gaps = 33/414 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 949

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +   ++ G  +S+ S     +  +  +
Sbjct: 950  QQEIFEEFNRGGQIRADQGLGLGLAISKGIAHVLGHQISMRSWPGQGSVFSITL 1003



 Score = 78.4 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKMANETLEE 759


>gi|330895745|gb|EGH28034.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 289

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 132/274 (48%), Gaps = 26/274 (9%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+  R ER L EKN  L  A  +K+ F+  +S+ELR+PL  +IGF++ L+   +G + 
Sbjct: 4   DVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMT 63

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y+  I  S   LL+L+NDILDL+ V+AG+M L   ++ L++LL+     +  +  
Sbjct: 64  DAQRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAA 123

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-------- 715
             +I++K+ ++ + G    DR++  QI   +L+NA+ FS  G  V L             
Sbjct: 124 LQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLI 183

Query: 716 ----------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
                                 SV + G  I +     +F  F         +  G GLG
Sbjct: 184 DGDWPTYGFTLPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLG 243

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L++V+    LHGG V+++S  +        +P +
Sbjct: 244 LAMVKQLTELHGGCVAVASVKDLGARFVVWLPIR 277


>gi|288957521|ref|YP_003447862.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288909829|dbj|BAI71318.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 911

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 21/254 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E   +A + K++F+  +S+E+R+P+  ++G   LL+ ++   L+  Q   V  
Sbjct: 186 RELRESREQAEEATKAKSAFLATMSHEIRTPMNGVLGMLGLLERTE---LDDHQRDTVGT 242

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+  LL +++DILD + ++AG M L    + +  L+  V +++A       + +   
Sbjct: 243 MRESANALLRIIDDILDFSKIEAGKMDLERVALSVPSLVEGVAETLAPAAGAKGLTLLTY 302

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------- 718
            D  +  + + D  RL QI   +  NA+ F+  G  VIL+A  +                
Sbjct: 303 VDPAIPQALLGDPVRLRQILFNLAGNAIKFTESG-RVILRAELEPAADGAGPGTGTGTEP 361

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
               +V + G  I E   + +F  F        RR  G GLGLSI      L GG + + 
Sbjct: 362 ILRIAVCDTGIGITETTRQRLFQPFTQAESSTTRRFGGTGLGLSISRRLAALMGGEIGVE 421

Query: 776 SSDEGVTTINCRIP 789
           S+    +    R+P
Sbjct: 422 STPGAGSIFWLRLP 435


>gi|218708960|ref|YP_002416581.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
 gi|218321979|emb|CAV17985.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
          Length = 1462

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 171/393 (43%), Gaps = 31/393 (7%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--------PDGRIKLSNPAFRSLWKTE 470
           +  +   E +            D++ +GV +           D R    +     ++   
Sbjct: 567 IEQRKIAEQRAKAAEAHLQTLADNI-DGVVLKHIQTHPRQPLDIRFSFVSAGVSDMFGLS 625

Query: 471 ENRL-SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            + +     H+ ++ A       E+    +  AI T   +  + +Q  LE      ++++
Sbjct: 626 VDNVKEHPQHLFDLIAEDDLPQFETS---MLEAIETGHWENEQRMQ--LESGQTKWVKFN 680

Query: 530 IIPLPNAQTMLTFVNVTDS---VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              + N++T+     +TD     + ++AL    +    A   K+ F+  +S+E+R+P++ 
Sbjct: 681 -SQVSNSKTIEWNTVITDITLLKKQQQALDNARQKAESATAAKSQFLATISHEVRTPISG 739

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G  +L++  +   L+ +       ++ S+  LL++VND+LD + ++AG + LN + I 
Sbjct: 740 ILGLLELMQEHQ---LSEELLNLHGGLNQSARNLLHIVNDVLDYSKIEAGKLDLNPTEIE 796

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           L  +L  + Q  +    +  +      D  L  ++ AD  RL QI +  L+NA+ F+  G
Sbjct: 797 LGKVLARIVQPQSIHAQQKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKFTEHG 856

Query: 706 STV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +      +++          +V + G  IP+D  +S+F  F        RR  G GLGLS
Sbjct: 857 TISLHIDVIEQNEHQQKVSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTGLGLS 916

Query: 760 IVESFINLHGGHVSISSSDEGVT--TINCRIPS 790
           I    I    G++ +SS +   +  T+   +P+
Sbjct: 917 IALKLIEQMDGNIELSSEEGKGSHFTVTVTLPT 949


>gi|148240299|ref|YP_001225686.1| two-component system sensor histidine kinase NblS [Synechococcus
           sp. WH 7803]
 gi|147848838|emb|CAK24389.1| Two-component system sensor histidine kinase NblS [Synechococcus
           sp. WH 7803]
          Length = 681

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 155/390 (39%), Gaps = 40/390 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +   DGRI L+NP  R L++ E   L     +  +   
Sbjct: 292 EELQAAQVKQASLIATMADGAVLLDGDGRIVLANPTARRLFRWEGRNLEGKDFLNELPEL 351

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +   +E    +  ++  T  ++ R S+      L         +  P+ +T+       
Sbjct: 352 LAVELHEP--LEAVSSNRTDTNELRSSIGDPARTLR---FVLQAVREPSGETLKGLAVTI 406

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L        +  +
Sbjct: 407 QDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDMGDLLSDEDR 456

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++   +A +  L  LVND+LDL+ +++    + ++ I +   L +  +S      +  
Sbjct: 457 QEFLGIANAETDRLTRLVNDVLDLSRLESSR-SVTFAPIEVRPGLEQTLRSYQLNASDKQ 515

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------- 717
           + + + +D  L   + +   LLQ+   ++ NA+ F+ KG  ++++A              
Sbjct: 516 VELSLEADPNLPDILGNWDLLLQVLDNLVGNALKFNRKGGQLMIRAYTWPDSCQMTPAHP 575

Query: 718 --------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVE 762
                              + + G  I  D  + +F RF    +      G GLGLSIV 
Sbjct: 576 ESEGPTCPLASPLPRMRVEICDTGYGISPDNQQRIFERFYRVENAVHTEVGTGLGLSIVR 635

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +  HG  + ++S  +  TT    +P  +
Sbjct: 636 GILEKHGTEIRMASEPDVGTTFWFDLPLAQ 665



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 73/241 (30%), Gaps = 31/241 (12%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            S  + +F   +     G     +++   N+        D +    +         ++  
Sbjct: 250 RSIADGDFRARIGLPVGGE--LGELLDGFNAMASQLQVYDAANIEELQAAQVKQASLIAT 307

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL----- 369
           +     + D +  +   N +   L+  +   L      +EL E L      P +      
Sbjct: 308 MADGAVLLDGDGRIVLANPTARRLFRWEGRNLEGKDFLNELPELLAVELHEPLEAVSSNR 367

Query: 370 -NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            +    + +I    ++          P+G+TL          G     ++LT +V+L   
Sbjct: 368 TDTNELRSSIGDPARTLRFVLQAVREPSGETLK---------GLAVTIQDLTREVELNAA 418

Query: 429 YNTL--------------VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            +                +K   ET+  + + ++       + ++N     L +   + L
Sbjct: 419 QSRFISNVSHELRTPLFNIKSYVETLHDMGDLLSDEDRQEFLGIANAETDRLTRLVNDVL 478

Query: 475 S 475
            
Sbjct: 479 D 479



 Score = 37.6 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 66/191 (34%), Gaps = 30/191 (15%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVFQ 234
           + A             S+   + D    L    D  G I+ AN + ++    E   +  +
Sbjct: 287 DAANIEELQAAQVKQASLIATMADGAVLL----DGDGRIVLANPTARRLFRWEGRNLEGK 342

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK---SYKIVRVLNSFGEAGI 291
             + E  +L   E+ + + + S+   +  E  S++           + VR  +     G+
Sbjct: 343 DFLNELPELLAVELHEPLEAVSSNRTDTNELRSSIGDPARTLRFVLQAVREPSGETLKGL 402

Query: 292 AI---DVSKEITVNDQLTH------------------TYEILHNLTVAIAIFDQNRYLQF 330
           A+   D+++E+ +N   +                     E LH++   ++  D+  +L  
Sbjct: 403 AVTIQDLTREVELNAAQSRFISNVSHELRTPLFNIKSYVETLHDMGDLLSDEDRQEFLGI 462

Query: 331 HNRSFVELWEI 341
            N     L  +
Sbjct: 463 ANAETDRLTRL 473


>gi|7272187|gb|AAA23034.2| histidine protein kinase [Caulobacter crescentus CB15]
          Length = 597

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/363 (22%), Positives = 153/363 (42%), Gaps = 11/363 (3%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +Y + +      +D L          G++     A               T    +    
Sbjct: 198 RYASEIIGLETLLDGLPHLAIAVRGQGQVTAVRGAA----------PPGVTRADLVNRGL 247

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +      D   L AAI  +  +   SL     L  + V+   +  +   Q +    ++T 
Sbjct: 248 TGAAAPGDRQRLTAAIAQAHREGSASLTFNPALGVERVVALDMHRVAPNQLVGVLRDITV 307

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E AL +           +  F+ ++S+ELR+PL  I+GF+D+++    G L+ + +
Sbjct: 308 ERHREHALDQARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYA 367

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y E I  S   LL+L+ND+LD++ ++A   +L        + +    + +  +     +
Sbjct: 368 EYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGV 427

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +         ADR+ L QI   ++SNA+ F+ +G  V + A   +G     V + G
Sbjct: 428 QLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTG 487

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  +  + +   +       QR RG GLGLS+V +F  L GG + I S     TT++ 
Sbjct: 488 VGISPEDLERLGRPYEQAGGAEQRARGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSV 547

Query: 787 RIP 789
           R+P
Sbjct: 548 RLP 550


>gi|196048232|ref|ZP_03115409.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196020969|gb|EDX59699.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 456

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 123/246 (50%), Gaps = 8/246 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     R+L    + + +   +KN F+  +S+ELR+PLT I G+++ L    + SL  K+
Sbjct: 215 ELGELARSLNHMVKKIDQTTHMKNEFIASISHELRTPLTGIKGWSETL--GTVDSLTEKE 272

Query: 607 -SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             Q +  I+  +  L++LV ++LD + ++     L    I+L +L+NE    + TK  + 
Sbjct: 273 IKQGMSIITQETDRLIHLVEELLDFSKLELDYPNLYKENILLQELINESIWQLGTKAEQR 332

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
              IK++S+ +      DR RL Q+F  ++ NA+ +S+    + +   + +   +  + +
Sbjct: 333 --EIKIVSELEEVEITGDRDRLKQVFLNLIDNAIKYSNIKGIITVTLLKKD-QVLIRITD 389

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  I E+    +   F       +  G G+GL+IV+  + LH G + I S     TTI 
Sbjct: 390 QGIGIAEEHLPYINESFYQV--NTKSSGSGIGLAIVKKIVELHNGSIQIDSELGIGTTIT 447

Query: 786 CRIPSK 791
            ++P++
Sbjct: 448 IKLPTE 453


>gi|163814352|ref|ZP_02205741.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759]
 gi|158449987|gb|EDP26982.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759]
          Length = 765

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 117/238 (49%), Gaps = 11/238 (4%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +    A++ K  F+ ++S+++R+P+  IIG   L++ +       K  +Y + I+ SS  
Sbjct: 369 QTAENANKAKTDFLSNMSHDIRTPMNAIIGIISLIRHNAGDK--EKVIEYADKIAISSQH 426

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLG 678
           LL ++ND+LD++ ++AG     YS   + D + E+     ++ +E N    +   + K  
Sbjct: 427 LLGIINDVLDMSKIEAGKTVFKYSDFSILDSIEELNTIFHSQANEKNQSFIITKGNLKHE 486

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPE 732
               D+  L+QIFS +LSNA+ ++ +G  +   A          G + F V +NG  +  
Sbjct: 487 WVNGDKVHLMQIFSNLLSNAIKYTQEGGIIQFIAEESETNSSTYGKYHFIVSDNGMGMSA 546

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           D  +++F+ F         + +G GLG++I ++ +   GG + + S     ++    +
Sbjct: 547 DFKETIFDAFTRAESSVTNKIQGTGLGMAITKNLVESMGGTIEVESEPNRGSSFEVIL 604


>gi|78213638|ref|YP_382417.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9605]
 gi|78198097|gb|ABB35862.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9605]
          Length = 688

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 147/391 (37%), Gaps = 41/391 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +   DGRI L+NP  R L++ E   L     +  +   
Sbjct: 290 EELTAAQVKQQSLIATMADGAMLLDADGRIVLANPTARRLFRWEGRSLEGQELVGELPEL 349

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +   +     D      +  +D R S+      L    +    +   + +T+       
Sbjct: 350 LAIELHSP--LDALLGGGSDSEDLRCSVGEPARTLR---IVLQAVRDASGETLKGIAVTI 404

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L          +Q
Sbjct: 405 QDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDLGDQLSPDEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++   +  +  L  LVND+LDL+ +++G   L +  I +   + +  ++      +  
Sbjct: 455 KEFLGVANDETDRLTRLVNDVLDLSRLESGR-TLQFEPISMRPAMEQTLRTYRLNAEDRE 513

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------- 717
           + + +     L   + +   LLQ+   ++ NA+ FS  G  + L+A              
Sbjct: 514 VELVLDVPEDLPDVLGNWDLLLQVLDNLMGNALKFSRPGGPLALRAYPWPDTCSVEGTAI 573

Query: 718 ---------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIV 761
                               + + G  I     + +F+RF    +      G GLGLSIV
Sbjct: 574 TGTDGPTCALTSPLPKLRVEIADTGCGISSTDQERIFDRFFRVENAVHTEVGTGLGLSIV 633

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +  HG  V ++S  E  TT    +P  +
Sbjct: 634 RGILEKHGAQVQMASEPEVGTTFWFDLPLAK 664



 Score = 47.2 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 55/185 (29%), Gaps = 17/185 (9%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            S    NF   V     G     +++   N+      A D +    +         ++  
Sbjct: 248 RSVASGNFGARVDLPVGGE--LGELLTGFNAMASQLEAYDEANIEELTAAQVKQQSLIAT 305

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL----- 369
           +     + D +  +   N +   L+  +   L       EL E L      P        
Sbjct: 306 MADGAMLLDADGRIVLANPTARRLFRWEGRSLEGQELVGELPELLAIELHSPLDALLGGG 365

Query: 370 -NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            + +  + ++    ++           +G+TL          G     ++LT +V+L   
Sbjct: 366 SDSEDLRCSVGEPARTLRIVLQAVRDASGETLK---------GIAVTIQDLTREVELNAA 416

Query: 429 YNTLV 433
            +  +
Sbjct: 417 QSRFI 421


>gi|312891789|ref|ZP_07751296.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311295731|gb|EFQ72893.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 508

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 99/501 (19%), Positives = 184/501 (36%), Gaps = 53/501 (10%)

Query: 318 AIAIFD---QNRYLQFHNRSFVELWEI--------DLAFLATNPSNDELLEFLRSANKLP 366
            + I D    +  + + N++F  +           +  FL    +  E    LR A K  
Sbjct: 29  GVVITDHTQPDEPIIYCNKAFESITGYTNKEIIGHNCRFLQDGDNEQEGRRRLREAIKNG 88

Query: 367 EQ-----LNWKT-----WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           E       N+K      W E + S  K  + +   +    G    +              
Sbjct: 89  EHCQVEIRNYKKNGRMIWNELMISPVKDRDGNVTNFI---GIQNDITRRKEAEDALASEK 145

Query: 417 ENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           +NL  +V +               I+ + E + V     R+   N  F   +K  EN + 
Sbjct: 146 QNLEERVLERTEDLQESEAYLASIIETIRESLVVLDEKMRVLSVNDHFCRFFKVAENDIR 205

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAII------TSFDDERKSLQGTLELLSDSVLEYS 529
                R +       +N  +  +L   ++        F+ E +      +LL  +  + +
Sbjct: 206 G----RVLFEHNDGQWNLPELRNLLINVLPNNNPFEGFEIENEFPNIGRKLLVLNARQVT 261

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +      + +L   ++T+    E              + K  F+   S+E+++PLT+I G
Sbjct: 262 LKGKYQNRILLAIEDITEQREIE--------------QRKEDFISIASHEMKTPLTSIKG 307

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL+     + +++     E  S S   L  L+ D+LD++ + +G ++L +S      
Sbjct: 308 NLQLLQRKAQQNNDTQYLSGFETASKSIARLEKLIYDLLDVSKIQSGKVELIFSKFNFQQ 367

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ E    +      + + +K  SD +     AD  RL Q+   +L+NA+ +S  G  VI
Sbjct: 368 LIIESVNGVQATTQTHKLVMKGSSDIE---VTADFGRLEQVLLNLLNNAVKYSPTGKEVI 424

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
           +           S+ + G  I E   K +F RF        +  GVG+GL +    I  H
Sbjct: 425 VHTCILPEYVKVSITDTGVGIHERDHKRIFERFYRADQISEKFPGVGIGLYVSNEIIKEH 484

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G + + S +      +  IP
Sbjct: 485 RGTLWVESQEGKGAVFSFTIP 505


>gi|289550735|ref|YP_003471639.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180267|gb|ADC87512.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           lugdunensis HKU09-01]
          Length = 588

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 155/391 (39%), Gaps = 35/391 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + T +  G       +++ ++       +T   ++   I+ ++EGV        I LSN 
Sbjct: 229 VTTKDEIGELSRALNDMSFEIQENVQALSTSKNIRDSLINSMAEGVVGINDHRDIILSNK 288

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               +  T +  +                       D      TS   E +         
Sbjct: 289 MADEILPTIDQSMY------------------ERIEDQIEDTFTSKGTEFREYDFDTRYY 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              V   S IP          V +   +  E  L          D++K  F+ +VS+ELR
Sbjct: 331 ---VFIMSYIPQIQEDGRSGIVVIIRDMTNEHNL----------DQMKKDFIANVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+T+ +    + +   +  + +  +   +  L  LVN++L++A +DA  + +N
Sbjct: 378 TPISLLQGYTESIVDGIV-TEPEEIKESLSIVLDETNRLNRLVNELLNVARMDAEGLSVN 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +  LLN+++     +  + ++ + +  +     +  D  R+ Q+ + ++ NA  +
Sbjct: 437 KEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPETNDALWYYDSDRIDQVLTNLIDNATRY 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +  G T+ + +   +   +  + + GS I  +    VF+RF        R   G GLGL 
Sbjct: 497 TQPGDTISITSEDTDKYNVLHINDTGSGIAPEHLNLVFDRFYKVEASRTRGKQGTGLGLF 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           I +  I  HGG +++SS     TT   ++P 
Sbjct: 557 ICKMIIEEHGGTITVSSVVGEGTTFTIKLPK 587


>gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1467

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G  + +    + ++      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDEDKHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF    +      +G G+GL++ +  I+LH G +   S +         +
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|153839227|ref|ZP_01991894.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810]
 gi|149747255|gb|EDM58243.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810]
          Length = 566

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 144/318 (45%), Gaps = 8/318 (2%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            H  ++     +    +  W   A  +    DER   +    +  + + +  I       
Sbjct: 115 HHFGHLDLKSDKPIARTPNWQNEALHLPIIIDERVVGELIFSVSLEQIEQAFISKQMELV 174

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           + L    ++  +  ER +    +   ++++    FV  +++ELR+PL  ++G  +LL  +
Sbjct: 175 SDLVHGVISRHLSLEREVE-LRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKT 233

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +LG     Q QY+  +  S  +L  ++ND+LD + ++AG+M++       +DL   +   
Sbjct: 234 QLG---EDQRQYLGNLIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGV 290

Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            A K  E  I   +     +  F + D +R+ QI   ++ NA+ F+  G  V L+    N
Sbjct: 291 FAAKAAEKRIHFSIDKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGGVV-LRVEWVN 349

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S 
Sbjct: 350 GTAFFEVEDTGIGIPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISF 409

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   TT    IP KE
Sbjct: 410 ESEERKGTTFKVSIPLKE 427


>gi|153834760|ref|ZP_01987427.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01]
 gi|148868795|gb|EDL67863.1| sensor histidine kinase/response regulator [Vibrio harveyi HY01]
          Length = 576

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E   +A++ K+ F+  +S+E+R+PL +++G  D+L+ S   +L+  QS+ +  +
Sbjct: 200 QLAKAREEAERANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQS---TLSESQSEVLNQM 256

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL +++DILDL+ +++G  +L+     L D +  V           N+  +   
Sbjct: 257 ECSADLLLAIISDILDLSKIESGSFRLSEQWTNLRDAVTLVISQQKQVATSKNLSFEYQC 316

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +      +  D  RL Q+   ++ NA  F+  G  + +     +G+ + SV + G  IP+
Sbjct: 317 NLDNNKQYWIDSTRLSQVLFNLIGNASKFTDFGG-INVSVIERDGELVISVVDTGIGIPQ 375

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  F        RR  G GLGL+I +  + +  G +S+ S +   +    +IP
Sbjct: 376 SKIGHLFTAFHQGDSSITRRFGGTGLGLAITKHLVEMMRGTISVKSEENVGSHFEIKIP 434


>gi|71280347|ref|YP_271164.1| sensory box sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71146087|gb|AAZ26560.1| sensory box sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 1137

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 166/386 (43%), Gaps = 38/386 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-----------EN 472
           +  TK+     +    ++ + E +    PDG +   N AF  L                 
Sbjct: 441 ETSTKHQRDYALLRSVMNAIPELIVFNDPDGSLMGCNKAFERLANHSVEQMLGSNSASFM 500

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +     I+ + A  +  Y +         I   F ++    QG +              
Sbjct: 501 PVPLAEEIKILNALNNNVYPQQALIKAGEFIYQGFCNQFTDEQGNI-------------- 546

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                T+  F +VT     + AL +  +    A+ +K  F+ ++S+E+R+P+  + G  D
Sbjct: 547 ---LGTISIFHDVTSQQATQSALVKARDQAEYANRVKIQFLANMSHEVRTPINAMQGMMD 603

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +   SL+++Q  Y+    ++S+ LL+LV+++LDL+ ++AG M ++   + L  ++N
Sbjct: 604 LLAHT---SLDTRQLHYLVNAQSASSTLLHLVDELLDLSKIEAGKMIVSQDAVNLPIIIN 660

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----ST 707
           +  +   T +    ++I V     + S  ++D  RL+Q+ + + +NA+ F+ +G    + 
Sbjct: 661 KALKLNITNVDHQRVKIIVDMSADVPSNVISDEMRLVQVLANLFNNAIKFTEQGQIKLTI 720

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
            +L          F + + G  I  +    +FN F         +  G GLGLSI +  I
Sbjct: 721 DVLSIDDTVAKLRFRMSDTGIGIASNNQSHLFNAFSQADESMTRKYGGSGLGLSICQQII 780

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L GG + ++S     + ++  +P +
Sbjct: 781 KLLGGKIKLTSQLGQGSELSFVLPFQ 806


>gi|328873301|gb|EGG21668.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1223

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 166/394 (42%), Gaps = 22/394 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E L  ++++        +     +D + + VA+    G +   N           + +  
Sbjct: 27  EELIQELEVMRGLAKSNRSSRIMLDEMYQFVALLDNKGNLLDVNEPALHGGGMIRSNILG 86

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                      +    +     +  A    F      + G         +++S++PL + 
Sbjct: 87  TPFWDCRWWAVNETSMDDCKKAVMRAAAGEFIRYECDIFGKSAGTETITIDFSLMPLFDE 146

Query: 537 QT-----MLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
                  +    N+T+   AE         L    E +++ DE+K  F  +VS+ELR+PL
Sbjct: 147 NGAVKLILPEGRNITEKKLAEDEIARKNNELRSLYEKIKELDELKTQFFANVSHELRTPL 206

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I   T+ L      S ++K  + +E ++ ++  LL  VN++LD++ ++AG M +NYS 
Sbjct: 207 TLISHPTEKLLKDPGVSADAK--KLLEVVARNTRGLLKHVNNLLDISKLEAGKMNVNYSM 264

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSS 703
             +   +  +         +  +   + +    L     DR ++ ++ + ++SNA  F+ 
Sbjct: 265 ADVGKTITTIGLCFELLAKDKKLEYIINAPKDGLLMAAIDRDKIERVVTNLISNAFKFTP 324

Query: 704 KGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLG 757
            G  + +    D    N  F+ +V + G  +PED    +F RF  V  +   +  G GLG
Sbjct: 325 TGGKIRISVEPDQLNQNPAFLVTVADTGPGVPEDQYDIIFERFRQVDGSSSRRHGGTGLG 384

Query: 758 LSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
           LSIV+ F+ LHGG+V +++  EG       RIP 
Sbjct: 385 LSIVKEFVQLHGGNVQVTAQKEGTGAVFLIRIPL 418



 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 113/276 (40%), Gaps = 49/276 (17%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++   L +A+  K+ F+ ++S+ELR+PL  I G++ LL+    G++++   + +E I
Sbjct: 675 ELEKERVLLDRANRSKDEFLMNLSHELRTPLNGIFGWSQLLR--YDGNISTDVRRGLEAI 732

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +     LVND+LD++ V +G   L+   + + +++    ++   K      +I V  
Sbjct: 733 ERCAHAQNQLVNDLLDMSLVISGKFSLSNEVVDIREVIRLAAETFINKDKAKT-KIVVDV 791

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------------------- 712
                    D  RL Q    ++SN++ FS++G +V ++                      
Sbjct: 792 GDLPLIVCGDPVRLEQSIWNLVSNSIKFSNQGGSVTVRTSIPSQTGTTPLTLPPGVCGQS 851

Query: 713 ----------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--------RGV 754
                     A +    + ++ + G  I  D    VF RF    +   R           
Sbjct: 852 EEKLNLLRNHASNKNWCLVTISDQGCGITHDFLPHVFERFRQADNSSTRGHGGLGLGL-- 909

Query: 755 GLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIP 789
               SIV + + LH G++   S  +   +T    +P
Sbjct: 910 ----SIVNNIVELHNGYLFAFSEGEGKGSTFTIILP 941


>gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 968

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 178/386 (46%), Gaps = 24/386 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTH 479
            + D E  Y   +  +     ++ +   +      +    +P    L      ++    +
Sbjct: 310 RRKDTEILYRDELFQKLSM--NVDDVFLMLDAKTYQADYVSPNVEKLMGFTVEQIRKDIY 367

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--- 536
           I         + +E+   +    I TS  ++++     L   +     + I+ + +    
Sbjct: 368 I---LGKLHPWDSENSKKNYLEGIQTS--EQQEWDFEYLHQKTGERRWFHIVAMGSEVNR 422

Query: 537 --QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + +L   + T      +AL+E   A   A++ K++F+ ++S+++R+P+  IIGFT L 
Sbjct: 423 KKKYILVMSDRTSDRNMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLA 482

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++       +   Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+++
Sbjct: 483 VSNIDDK--ERVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDILHDL 540

Query: 655 KQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K  I+ ++H   + + + + D        D+ RL Q+   +LSNA+ F+  G TV ++  
Sbjct: 541 KTIISGQIHAKQLELYMDAMDITNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIR 600

Query: 714 RDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFI 765
           +  G       +   VK+NG  + ++  + +F  F         + +G GLG++I ++ +
Sbjct: 601 QRPGTQKGSELYEIRVKDNGIGMSQEFVQKIFAPFERERTSTVSRTQGTGLGMAITKNIV 660

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ GG + + +     T    R+P +
Sbjct: 661 DMMGGTIEVQTEQGKGTEFIVRLPFR 686


>gi|146297994|ref|YP_001192585.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146152412|gb|ABQ03266.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 724

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 10/257 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           ++   N        + L        KA + ++ F+  VS+ELR+PL  I G T LL    
Sbjct: 329 IIRNQNNLLLREKNKELILAKNKAEKASKARSEFLSTVSHELRTPLNAINGITHLLLE-- 386

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +    Q +Y+E +  S   L   +N+IL++  +D+  +++   +  L +LL  ++ S+
Sbjct: 387 -DNPKKAQLKYLESLKFSGNYLTTFINEILEINKIDSTKVEVENISFNLKELLFNIQSSL 445

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILK----AA 713
                 N     +  D  +    + D  +L QI   +++NA+ F+  G   ++       
Sbjct: 446 KELATANKNYFNLEIDKAIPDILIGDPTKLSQIILNLINNALKFTQNGQVSVIAKLFAEE 505

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N    F + + G  IPED  ++VF  F   +     +  G GLGL+IV+  I L GG 
Sbjct: 506 DENATVYFEIVDTGIGIPEDKLQTVFESFSQGSIEVNRKYGGTGLGLTIVKKLIELLGGE 565

Query: 772 VSISSSDEGVTTINCRI 788
           + + S     +T   ++
Sbjct: 566 IKLKSEVGKGSTFTFKL 582


>gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus 10329]
          Length = 1128

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 10/289 (3%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-TEKNEALR 563
           T+F+ ERK   G L       + +  +     + + T     + + +   L  ++N+ L+
Sbjct: 401 TTFNTERKDEIGRL------AISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQ 454

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            AD++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ I  S   L NL
Sbjct: 455 LADKLKDEFLATTSHELRTPLHGMVGIAETLVSGANGVIPASQKYQLDIIIKSGQRLANL 514

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V+D+LD   +  G M +  S + L      V +     +    IRI       L +  AD
Sbjct: 515 VDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRIINQVPADLKAVSAD 574

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F   +
Sbjct: 575 PQRLEQVLYNLIGNAIKYTSEG-KIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLI 633

Query: 744 SN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                    R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 634 QAGQDASRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 682



 Score = 38.4 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E ++ +      E L +   AI    +++ ++F N +  +L++  L  L  + ++    E
Sbjct: 865 EASLLETQGRLLEQLESAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSAD----E 920

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
            +       +Q ++    +      + +    D   LP G  L V+   N  GG
Sbjct: 921 LIAPKYLTVKQPHYCGKIDIYIEDIRQN-IEADILKLPEGSGLDVMYIFNVGGG 973


>gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
 gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
          Length = 1384

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 116/286 (40%), Gaps = 55/286 (19%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  +    A   K+ F+  +S+E+R+P+  +IG T LL  +   SL S Q+++VE I 
Sbjct: 654 LAKARDEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLLDT---SLKSDQTEFVETIR 710

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   LL L+NDILD + +++    L      L   L E    +  K+ E  + +    D
Sbjct: 711 SSGDALLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKVSEQGLELVYFID 770

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR---DNG------------ 717
            +  + V  D  R+ QI   +LSNA+ F+S G   V +   +   +              
Sbjct: 771 PETPTIVIGDVTRVRQILVNLLSNAVKFTSDGEVLVSVSGRKLEIEENVQNLAVENISES 830

Query: 718 ---------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
                    +  FSVK+ G  IP +    +F RF        R   G GLGL I +    
Sbjct: 831 DTCDIWPAYEIQFSVKDTGIGIPANRMNRLFKRFSQVDSSTNREYGGTGLGLVISKRLAE 890

Query: 767 LHGGHVSISS------------------------SDEGVTTINCRI 788
           + GG + + S                        +++  +T    I
Sbjct: 891 MMGGQMWVESMGVVGGNPPATYRLPDLYEHSAAVNEKSGSTFYFTI 936


>gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891]
 gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891]
          Length = 886

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 134/282 (47%), Gaps = 28/282 (9%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKAD-------EIKNSFVQHVSYELRSPLTNI 587
           N   +       +  +A+  LT+  E   KA        + K+SF+ ++S+E+R+PL  +
Sbjct: 350 NQFAVEVERLTIERQQAQERLTQAKEDAEKAKDAAVMACKAKSSFLANMSHEIRTPLNGV 409

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG T++L  +    LN  Q  YVE I  SS +LL+L+ND+LD + +++G++ ++  +  +
Sbjct: 410 IGITEVLSDT---DLNPSQKDYVETIETSSQLLLSLINDVLDFSKIESGMLLVSPHSTCV 466

Query: 648 NDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            + + ++   +A +  E  I + V IS       + D  RL Q+    +SNA+ F++ G 
Sbjct: 467 RESIYDIASIVAPQAKEKGIDLHVSISSETPYRVIVDDHRLRQVLMNFMSNAVKFTNSG- 525

Query: 707 TVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            V L+ +  +      +  F+V++ G  I E   K +F  F        R   G GLGL+
Sbjct: 526 VVSLQLSSKHVGENIIEMTFAVQDTGVGIDEQQQKKIFEPFSQEDDSTTRKFGGTGLGLA 585

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI---------PSKE 792
           I    + L G  + ++S     +     +         P+KE
Sbjct: 586 ISTQLVELMGSQIELTSIKGEGSRFYFTLTLPIDVYHYPTKE 627


>gi|91228450|ref|ZP_01262374.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|91187985|gb|EAS74293.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
          Length = 1143

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 165/414 (39%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAEQGLCGPGDPDDHVRRRVYHLEQGTRHTSSRV- 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI----------- 568
                 V+E    P+P    +++F ++T    AE+AL + NE L +   +           
Sbjct: 715  RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANETLEERVRLRTRELEQLNKQ 774

Query: 569  --------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                          K+ F+  VS++L  PL     F   L      S   K S ++E   
Sbjct: 775  LVEATQRSDLESKSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDSEAKKLSAHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G +++N     LND+L+ +    +    +  I   +I  
Sbjct: 835  EAAE---DLIGDLLDISRLESGKLEVNVHGFALNDVLSNLNAEFSALAKQQGIEFTMI-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++  G  V L   R  G     V +NG  I E+ 
Sbjct: 890  PSSLMVKSDPKLLRRVVQNFLTNAFRYNPNG-KVALGVRRVKGRVRIDVWDNGVGIEEEK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 949  QQEIFEEFNRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWVGKGSVFSITL 1002



 Score = 81.1 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             +            +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCG-PGDPDDHVRRRVYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKDANETLEE 759


>gi|330814970|ref|YP_004358675.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327367363|gb|AEA58719.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1125

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 149/371 (40%), Gaps = 25/371 (6%)

Query: 432 LVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++    I+ +  G+ +     G +     +  +L +  E        I  +    +R 
Sbjct: 388 SERLSRTMIETVPVGIGLVSTGSGELLYGGSSLVALAELVEG--GMPRLIDELKQLHARL 445

Query: 491 YN--ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
            +       ++F   +     + K L           L   ++       +  FV++T S
Sbjct: 446 ASAKHDSHDEVFQEDVLLRTRDGKDLALQARFALGRYLGKDVL-------VTAFVDMTAS 498

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              +  L     A  +A+  K++F+  +S+E+R+PL  I+G  +LL  S L  L   Q  
Sbjct: 499 QALQHQLRHAKLAADQANAAKSAFLAAMSHEIRTPLNAILGNLELLGHSALNPL---QRD 555

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ I ASS  LL ++ D+LD + ++AG M+L +    L D +       A   H   I 
Sbjct: 556 RLDTIRASSNGLLAIIQDVLDFSKIEAGEMRLEHMHFRLVDTITRSLAMFAPAAHLKRIA 615

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NGDFIF 721
           +       +      D  RL Q+ + +LSNA+ F+ +G  V L    +       G  + 
Sbjct: 616 LVGQFRAAIDQPMRGDPGRLAQVVNNLLSNAIKFTGQG-RVTLSLDVERLPCARGGMLVI 674

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  I      ++FN F+       RR  G GLGL++ +  +   GG + + S   
Sbjct: 675 EVADTGIGIEAAHLSTLFNAFMQADSSISRRFGGTGLGLALCQRLVTQMGGTIDVQSEPG 734

Query: 780 GVTTINCRIPS 790
             +    R+P 
Sbjct: 735 QGSRFTVRMPL 745


>gi|254499073|ref|ZP_05111765.1| transmission sensor LetS [Legionella drancourtii LLAP12]
 gi|254351700|gb|EET10543.1| transmission sensor LetS [Legionella drancourtii LLAP12]
          Length = 876

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 159/387 (41%), Gaps = 47/387 (12%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRS 465
           W+  ++  +  L  +Y  L+     T+  L  G++        ++ P  R++ S      
Sbjct: 128 WLSIDIDTRSMLIKRYQMLIVTIFITLFGLLVGLSCHYFLSKRIYLPISRLRRSMKQILR 187

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                E +++    +  I   C+    +    D    +    +     LQ +LELL +  
Sbjct: 188 NEFETEIKMTSKGELGIIEKGCNHL--QKRYLDTIKELNQHIEVATADLQQSLELLEEKN 245

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +E S+                             +   +    K+ F+ ++S+E+R+P+ 
Sbjct: 246 IELSL---------------------------DKKKTEEKSRQKSEFIANMSHEIRTPMN 278

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +IGFT++L  SKL  L   Q  YV+ I  S+  LL ++NDILD + +DAG + L+   +
Sbjct: 279 GVIGFTNVLLESKLDPL---QLDYVKTIKTSAQDLLGIINDILDFSKIDAGKLHLDCIPL 335

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            + + ++EV    A   H+  I +  I+D  +  + + D  R+ Q  S +++NA+ F+  
Sbjct: 336 NIRNCIDEVLTLAAPNAHKKGIDLIPITDINVPKTVLGDSFRIKQFISNLVTNAIKFTDH 395

Query: 705 GST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGL 758
           G   V  K  ++         ++ + G  I  +    +F  F         +  G GLGL
Sbjct: 396 GYVLVRTKVEQETDKDYTLCITISDTGLGISPEDQNKLFTAFNQADTSITRRYGGSGLGL 455

Query: 759 SIVESFINLHGGHVSISSSDEGVTTIN 785
            I +       G +S++S     +   
Sbjct: 456 VICKKLCEAMSGRLSMTSELNKGSAFT 482


>gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 1711

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 105/515 (20%), Positives = 189/515 (36%), Gaps = 66/515 (12%)

Query: 330 FHNRSFV-ELWEIDLAFLATNPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
           F+N ++  +  +    +    P+++   E+   +             TW E++    + S
Sbjct: 66  FYNDAYRHDTLQTKHPWALGRPASEVWAEIWPDIAPRTSAVLHDGTATWDEDLLLFLERS 125

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL---ETKYNTL---------V 433
              ++T+H     T       +  GGT  +   +T        E +  TL          
Sbjct: 126 GYREETYH-----TFSYSPLPDDDGGTGGLLCVVTETTQQVVGERRMATLRDLAAALGAA 180

Query: 434 KVQGETIDHLSE------------GVAVFGPDGRIKLSNPA--------------FRSLW 467
           + +   +    E             V +   DG  +L + A                   
Sbjct: 181 RSEEAVLTAAGEQLARNDVDLPFSAVYLLDDDGTARLGSTAGVEPGSAALPRVLTADDEA 240

Query: 468 KTEENRLSPGTHIRNIAATCSRYYN-------ESDGWDLFAAIITSFDDERKSLQGTLEL 520
                RL  G  +  +     R +        E       A  I S   +R  + G L +
Sbjct: 241 VWPVARLLAGEDV--VTEDLDRRFPGLPTGAWEVPPVQAAALPIASSSQDRGPVAGFLVV 298

Query: 521 LSDSVL----EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             +       +Y       A  +   +    S  AER    + EAL + D  K  F  +V
Sbjct: 299 GLNPHRRWDDDYRGFLGLVANQVSAALTNAGSYEAERR---RAEALAELDRAKTDFFSNV 355

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E R+PLT I G    L+ S + + + +  + +E I  ++  L  LVN +LD + + AG
Sbjct: 356 SHEFRTPLTLIAGPVAELRASPVAASDPRVREELEVIERNAQRLGRLVNTLLDFSRIQAG 415

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +   +  + L     E+     + +    +   V      G    DR    ++   +LS
Sbjct: 416 RIDARFEPVDLAATTAELASVFRSAVARAGLEFTVDCAPLDGPVHIDRDMWEKVVLNLLS 475

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           NA+ F+  G  + ++  +++G    SV + G+ IP D    +F RF   A    R   G 
Sbjct: 476 NALKFTFTGG-IAVRLRQEDGSARLSVTDTGTGIPADELPRLFERFHRVADARGRSGEGS 534

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G+GL++V   + LHGG + + S+ +  TT    +P
Sbjct: 535 GIGLAMVRELVGLHGGTIDVDSAPDTGTTFTVTLP 569



 Score = 47.6 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 7/167 (4%)

Query: 131 TEKLRKEGQSFDLVAETQNDCAIK---IEGRVSGSCAFL--RILSLDGIYSELAETTLKC 185
              LR E ++  +     +  A +   +EG  +G+  +L     + + +    A   L  
Sbjct: 687 LAALRAEPRTARVPVVLLSARAGEEAAVEGLAAGADDYLVKPFSAQELLARVRAHLELGR 746

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF-QKAIGESRKLF 244
            + +     F  + D    L+W  D  G  ++ N  + + T             +     
Sbjct: 747 ARRAAE-EQFTAMADLAPALIWVTDPDGRRVFVNRGWTEFTGRPAREEVGDGWEQGLHPE 805

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
             +   ++++++   +   E    L   +   + ++      G   I
Sbjct: 806 DRDRYAQVVAAAIARREGWEVDVRLRRADGTYHWLLERAVPIGRQPI 852



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 35/138 (25%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +   +   ++L        +      D     + V  PDGR    N  +           
Sbjct: 734 LLARVRAHLELGRARRAAEEQFTAMADLAPALIWVTDPDGRRVFVNRGWTEFTGRPAREE 793

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                 + +       Y +     +        D   +   GT   L +  +     P+ 
Sbjct: 794 VGDGWEQGLHPEDRDRYAQVVAAAIARREGWEVDVRLRRADGTYHWLLERAVPIGRQPIG 853

Query: 535 NAQTMLTFVNVTDSVRAE 552
             +T   +V     + A 
Sbjct: 854 TGETSAGYVGSCTDINAR 871



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 22/157 (14%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIA-IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +           +  + +L  A+  + D +    F NR + E            P+ +E+
Sbjct: 743 ELGRARRAAEEQFTAMADLAPALIWVTDPDGRRVFVNRGWTEFTG--------RPAREEV 794

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----- 410
            +        PE  +            +            +G    ++  + P G     
Sbjct: 795 GDGW-EQGLHPEDRDRYAQVVAAAIARREGWEVDVRLRRADGTYHWLLERAVPIGRQPIG 853

Query: 411 ------GTIWMFENLTVQVDLETKYNTLVKVQGETID 441
                 G +    ++  +   ET   TL+   G  +D
Sbjct: 854 TGETSAGYVGSCTDINARTR-ETARQTLLAEVGTALD 889


>gi|13475583|ref|NP_107147.1| two-component sensor [Mesorhizobium loti MAFF303099]
 gi|14026335|dbj|BAB52933.1| two-component sensor [Mesorhizobium loti MAFF303099]
          Length = 638

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 160/377 (42%), Gaps = 21/377 (5%)

Query: 419 LTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPA-FRSLWKTEENRL 474
           + + +D + +   L +   +    +  L + + +   DGR   +NPA    L       L
Sbjct: 3   IGILLDRQQRRRDLSRSNMIYRAMVRELPDCLNIKDVDGRFIAANPATAEMLGAASVEEL 62

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T     +   +  + + +   L A      +       G         L     P  
Sbjct: 63  IGKTDFDFYSKDVAERFRQDEMGALKAGQTLRIEQPAVFPDG-----KQGWLYTLKAPFR 117

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +    +T V   +    E+          +  ++KN F+  VS+ELR+PLT+I G   L+
Sbjct: 118 DEAGKITGVITYNREITEQK---------RNAQLKNDFISTVSHELRTPLTSIRGSLGLI 168

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +G L  K +  V     +S  L+ L+NDILD+  +++G++      + +  ++ + 
Sbjct: 169 AAGVVGELPPKAANLVNIAHTNSERLVLLINDILDMEKIESGVIAFKIKQMPVRPIMEQA 228

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-A 713
             + +  M E+ IRI ++ D        D  RL Q+ + +LSNA+ FS    TV++K   
Sbjct: 229 IAASSNYMAESRIRIVLVDDAPRAEANIDPDRLHQVMANLLSNAIKFSHADGTVMVKLQR 288

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
           RD      SV + G+ IPE     +F +F        R   G GLGLSIV++ +   GG 
Sbjct: 289 RDRDMLRISVIDQGAGIPEAFRSRIFGKFEQADASSTRKKGGTGLGLSIVKTIVEKLGGA 348

Query: 772 VSISSSDEGVTTINCRI 788
           VS  + +E  T+ +  +
Sbjct: 349 VSFETEEEKGTSFHVDL 365


>gi|117926967|ref|YP_867584.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117610723|gb|ABK46178.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 667

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 123/250 (49%), Gaps = 10/250 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +R +   T   E   +  E K  F+  +S+E R+P+ ++IG  D+L+ +    L+ +Q
Sbjct: 143 EVLRRQATETAYRECESRH-EAKRVFIAKMSHEFRTPMNSMIGMLDMLEGT---PLSEEQ 198

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ +  ++  L ++V ++LD+  ++AGI+K+      L  L+  V   I     +  
Sbjct: 199 FEYIDSMRQATDHLTSMVGNLLDITQLEAGIIKIKEKPFSLIALVKNVINIIRPLAFKKK 258

Query: 667 IRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFS 722
           I     IS      F+ D  RL QI   +L NA+ ++  GS  +L +A+      +  F 
Sbjct: 259 ILFIPYISPDIAPWFIGDANRLQQILVNLLGNAIKYTHWGSVALLISAKPVNSRYNVEFK 318

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +  + +F  FV  A+       G GLGLSI ++ ++L  G + + S+ + 
Sbjct: 319 VVDTGDGIDLENQEKIFQAFVRGAYNNAETTEGTGLGLSICKNLVDLMQGTIELKSTPQH 378

Query: 781 VTTINCRIPS 790
            +T +  IP 
Sbjct: 379 GSTFSVSIPL 388


>gi|284165489|ref|YP_003403768.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015144|gb|ADB61095.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 810

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 110/663 (16%), Positives = 237/663 (35%), Gaps = 53/663 (7%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           V G+ A  R          +     + K+            ++    +   D+ G+ ++ 
Sbjct: 168 VEGTFATRRTEDGRQEEIGVVRDITERKRREQERRRVVRALEAAREGISLLDENGEFIYV 227

Query: 219 NISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRMIS---SSALEKNFCETVSTLEHGNN 274
           N +Y    ET     ++ IGE    L  E    R +         +      +T    + 
Sbjct: 228 NDAYA---ETFRYEPEEMIGEHWDDLGIEADPSRFVDDILPRISAEGQWSGTTTCVRSDG 284

Query: 275 KSY---KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRY 327
            ++     +   +      +  D++++      L      L       +V I  +D    
Sbjct: 285 TTFLSQHSLTETDDGELICLVRDITEQRERERDLQAVRTQLDVATEAASVGIWTWDIRGD 344

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           +   +  F     +D    A     D   E +   ++       +T ++   +V ++ E 
Sbjct: 345 VVTADDYFASTCGMDPELAADGAPMDAFYESIHEDDRT------RTREQLERAVEETGEF 398

Query: 388 HKDTWHL-PNGQTLHVIVTS----NPRGGTIWM---FENLTVQVDLETKYNTLVKVQGET 439
             +      +G  + V+       +  G  + +     ++T     E +     +     
Sbjct: 399 EAEYRVRDADGDLVWVVARGEVEYDDDGTPVRLNGAVSDVTELKRRERQLEESERRYRTL 458

Query: 440 IDHLSEG-VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            +H   G V V+  + R  L   A       E  ++         +   S  + +     
Sbjct: 459 AEHFPNGAVGVYDENFRYTLIEGAVLGDTLPEAEQME--------SERMSAVFPDDVSRQ 510

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAER 553
           L      + +D       T         +    PL +A       +     +T+ V  ER
Sbjct: 511 LIPLYRAAIED--GETDSTTITFDGEHWQIWAAPLRDADGEIFAGLSLAQEITEQVERER 568

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E L +++E    F    S++L+ PL  +  +  L+++     L++   +++++ 
Sbjct: 569 RLEELVERLEESNERLEQFAYAASHDLQEPLRMVSSYLQLIESRYTDVLDADGREFIDFA 628

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  + ++++ +L  + V+ G     +  + L+D+L    + +  ++ E N  I    
Sbjct: 629 VDGAERMRDMIDGLLAYSRVETGGDP--FEPVALDDVLENALEDLQVRIEETNAEITT-- 684

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARDNGD---FIFSVKNNGSS 729
             +L     DR +L Q+F  +L NA+++S  +   V + A R  G    +  +V++ G  
Sbjct: 685 -EELPHVTGDRDQLRQLFQNLLDNALEYSGDEPPRVHVSARRRAGRDDRWEIAVRDEGIG 743

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I  D    +F  F S   +G+  G G+GL++ E  +  HGG + + S      T    +P
Sbjct: 744 IDPDDADEIFEVFESLHSQGEHDGTGIGLALCERIVERHGGEIRLESEPGEGATFTVTLP 803

Query: 790 SKE 792
           + +
Sbjct: 804 AAD 806



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 67/461 (14%), Positives = 147/461 (31%), Gaps = 43/461 (9%)

Query: 131 TEKLRKEGQSF-DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189
            E + + G +  ++   T+    I  E    G         L GI  ++ E   + +   
Sbjct: 19  IEGVFETGSARLEVELLTKGGERIPYEFVAVGLENPEGKRVLAGIGRDVTERKKRDR--- 75

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
             +S ++ + +++   ++ + + G     N +Y + T   G   ++ +GE   L  +E  
Sbjct: 76  -ELSKYETIVETMSDGIYVKGEDGRFTMVNEAYARMT---GYEREELVGEHASLVVDEAA 131

Query: 250 ---------KRMISSSALEKNFCETVSTLEHGNNKSYKIV--RVLNSFG---EAGIAIDV 295
                          +  E    E       G+    +          G   E G+  D+
Sbjct: 132 IEESKKRLTTEREGGADTENPAMEAKLQRPDGDRVPVEGTFATRRTEDGRQEEIGVVRDI 191

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++      +       L      I++ D+N    + N ++ E +  +   +     +D  
Sbjct: 192 TERKRREQERRRVVRALEAAREGISLLDENGEFIYVNDAYAETFRYEPEEMIGEHWDD-- 249

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTL--HVIVTSNPRGG 411
                    L  + +   + ++I     +      T      +G T      +T    G 
Sbjct: 250 ---------LGIEADPSRFVDDILPRISAEGQWSGTTTCVRSDGTTFLSQHSLTETDDGE 300

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I +  ++T Q + E     +        +  S G+  +   G +  ++  F S    + 
Sbjct: 301 LICLVRDITEQRERERDLQAVRTQLDVATEAASVGIWTWDIRGDVVTADDYFASTCGMDP 360

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS--FDDERKSLQGT---LELLSDSVL 526
              + G  +     +            L  A+  +  F+ E +        + +++   +
Sbjct: 361 ELAADGAPMDAFYESIHEDDRTRTREQLERAVEETGEFEAEYRVRDADGDLVWVVARGEV 420

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           EY     P  +      +VT+  R ER L E     R   E
Sbjct: 421 EYDDDGTP-VRLNGAVSDVTELKRRERQLEESERRYRTLAE 460



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 111/344 (32%), Gaps = 24/344 (6%)

Query: 239 ESRKLFKEEIKKRMISSSA----LEKNFCETVSTLEHGNNKSYKIVRVLNSFGE-----A 289
              +   EE ++R ++             E     + G    Y+ V V     E     A
Sbjct: 2   RPLEFIVEEDRERTVTEIEGVFETGSARLEVELLTKGGERIPYEFVAVGLENPEGKRVLA 61

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           GI  DV++    + +L+    I+  ++  I +  ++      N ++  +   +   L   
Sbjct: 62  GIGRDVTERKKRDRELSKYETIVETMSDGIYVKGEDGRFTMVNEAYARMTGYEREELVGE 121

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            ++  + E     +K       +   +      ++     D   +P   T     T + R
Sbjct: 122 HASLVVDEAAIEESKKRLTTEREGGADTENPAMEAKLQRPDGDRVPVEGTFATRRTEDGR 181

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
              I +  ++T +           +     ++   EG+++   +G     N A+   ++ 
Sbjct: 182 QEEIGVVRDITERKR----REQERRRVVRALEAAREGISLLDENGEFIYVNDAYAETFRY 237

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL--- 526
           E   +        I         E+D       I+     E +    T  + SD      
Sbjct: 238 EPEEM--------IGEHWDDLGIEADPSRFVDDILPRISAEGQWSGTTTCVRSDGTTFLS 289

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           ++S+    + + +    ++T+    ER L      L  A E  +
Sbjct: 290 QHSLTETDDGELICLVRDITEQRERERDLQAVRTQLDVATEAAS 333


>gi|228927068|ref|ZP_04090133.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832575|gb|EEM78147.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 444

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 206 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S++   V ++A ++ G  +  VK++
Sbjct: 325 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSNENGKVYIEATKNEGQAVIKVKDD 382

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 383 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 440

Query: 787 RIPS 790
           ++P 
Sbjct: 441 KLPL 444


>gi|254428255|ref|ZP_05041962.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196194424|gb|EDX89383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 699

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 6/246 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+  L +       A + K+ F+ ++S+E+R+P+T I+G+T+LL+   L + +  + +
Sbjct: 299 HHAQTQLAQARMQAEDASQTKSQFLANISHEIRTPMTAILGYTELLRDGSLNATD--KRR 356

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+  I  +   LL L+ND+LDL+ ++AG +           LL+EV  S+  +  E +I 
Sbjct: 357 YLTIIQHNGDALLALINDVLDLSRIEAGQLHPEQRLFSARVLLDEVIDSLQLRATEKDID 416

Query: 669 IKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNN 726
           +++        +   D  RL QI   ++ NA+ F+ +G   V +    +      SV++ 
Sbjct: 417 LRIHYLTDLPPTVSGDAFRLRQILVNLIGNAVKFTERGRVHVGVNWDEEASRLNVSVEDT 476

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E     +F  F        RR  G GLGLSI         G + + S+    +  
Sbjct: 477 GIGISEGELSRIFLPFSQADASHTRRYTGTGLGLSIARQLARAQDGDIQVFSTLNQGSCF 536

Query: 785 NCRIPS 790
              IP 
Sbjct: 537 VLDIPL 542


>gi|153812168|ref|ZP_01964836.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174]
 gi|149831823|gb|EDM86909.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174]
          Length = 747

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 121/248 (48%), Gaps = 11/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A+    E  +    A++ K  F+ ++S+++R+P+  IIG T L++        +K  +Y
Sbjct: 334 KAKNVAKEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHDAGNK--AKVIEY 391

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I +SS  LL ++ND+LD++ ++AG     YS   + DL+ E+     T+++E    +
Sbjct: 392 ADKIDSSSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELDTIFHTQIYEKQQTL 451

Query: 670 KVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFS 722
            +I +  +      D+  L+QIFS +LSNA+ ++ +G  +                + F 
Sbjct: 452 TIIKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGKIQFFVEECETKSSVYAKYRFL 511

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V +NG  +  D   ++F+ F         + +G GLG++I ++ +   GG + + S    
Sbjct: 512 VSDNGMGMSADFKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVESELGQ 571

Query: 781 VTTINCRI 788
            +     +
Sbjct: 572 GSCFEVLL 579


>gi|75908983|ref|YP_323279.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75702708|gb|ABA22384.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1557

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 112/256 (43%), Gaps = 5/256 (1%)

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                      +   A           + IK+ F+  +S+ELR+PL  I+G+  LL+T   
Sbjct: 1156 QQCAQAIARSQLYEAEKNARAVAESTNRIKDEFLAVLSHELRTPLNPIMGWAKLLRTRTY 1215

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                 KQ   +E I  ++ +   L++D+LD++ +  G + LN   + L + +    +++ 
Sbjct: 1216 KEETIKQG--LETIERNAKLQTQLIDDLLDVSRILRGKLNLNVCLVDLRNTVQAGLETVR 1273

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                  +I I  I   +    + D  RL Q+   ++SNA+ F+     V ++  +   D 
Sbjct: 1274 LAAEAKSIAIHTILSDEPVQVMGDGDRLQQVIWNLVSNAVKFTPSEGRVEVRLEQVGRDA 1333

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
               V + G  I  +    VF  F     +  R   G+GLGL+IV   + LHGG V   S+
Sbjct: 1334 QIQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGGLGLGLAIVHHLVELHGGTVVAQSA 1393

Query: 778  -DEGVTTINCRIPSKE 792
             ++   T   ++P  +
Sbjct: 1394 GEDQGATFTVKLPLHK 1409



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 90/670 (13%), Positives = 188/670 (28%), Gaps = 93/670 (13%)

Query: 15  EICTLFSCKIAVFGTIAGMLLT-----TIIPIILLIRQRNSLAKKVNETYSFLSEICDQL 69
           E+  +F  K+  +  +A  L        I    + I +R     +  +  S L +  +Q 
Sbjct: 198 EVSVIFHGKVVYYDLLAEPLTIDGQIQGITCAAVDITERKRSELEKAKLQSKLQKAIEQQ 257

Query: 70  SKYHSLLT----ENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYI 125
            +Y +LL      +       D K         L     +PQ+     +    L      
Sbjct: 258 DEYLALLNAWLASSPVALAFLDTKLRYVYTNEALAAINGVPQSQHIGRTLREVL-PEWAT 316

Query: 126 KLSKATEKLRKEGQSFD----LVAETQND----------CAIKIEGRVSG-SCAFLRILS 170
           +L    +++    Q             +                +G++ G     L I  
Sbjct: 317 QLEPILQQVMATKQPLVNQEVCGVTYPSGVHRCSLVNYYPVCLPDGKLLGVGVTALDITE 376

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFD----SLDFLV-W----HRDQAGDILWANIS 221
                  L         LS+ +   + L      S+  L  W      +Q G I    I+
Sbjct: 377 RKQAEDALRYIAQTSNTLSSSLDYEQTLAQIAKISVPQLADWCSIDIINQDGSIRRLPIA 436

Query: 222 YKKNTETE-----------------------------------GIVFQKAIGESRKLFKE 246
           +   T+ E                                     +      E+ +L ++
Sbjct: 437 HVDPTKAELARLFQEYAPQLGSGSLVANVLQTGEQLLVADLPDSPLPADQNEENLELLRQ 496

Query: 247 -EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL 305
             IK  M+      +     ++ +   + +SY    +  +   A  A    +   +   +
Sbjct: 497 IGIKSLMLLPLIAHEQVLGCITFVSAESGRSYNQSDLSLAKDIAYRAALAMENAQLYRDV 556

Query: 306 THTYE-----------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
               +           +L    VA+   D+       N+   +L  + +         D 
Sbjct: 557 QQALKHYAESLALLDALLAGAPVAVCFLDKELRYLRINQVLADLNGLSIEEHLGRKFQDV 616

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           L +      +  +Q+           V   +    +      G    V        G   
Sbjct: 617 LPKMAEQFEEQLQQVLETGQPLLNLEVSGEALGRPEINSYWLGNYYPVYDGMGKTVGIGI 676

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  ++T    +E       +      D  + G+ +   DG+   +NPA   +       L
Sbjct: 677 ILADVTATKQVEIALRESEERFRAMFDQAAVGITLVTLDGQFLQNNPALCDITGYSSEEL 736

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           S       I        + +    + A  I  +  E++ L+   +  +   +  +   + 
Sbjct: 737 SQMK-FPEITHPDDVEADWAYAKQVLAKEINGYSLEKRYLR---KDGTTVWVNLTASAVW 792

Query: 535 NAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ--HVSYELRSPLTNI 587
           N Q      +    ++ +  +AE A     EA        +  V   +V++ L  P    
Sbjct: 793 NEQGEPKYALGIIEDINERKQAEAAQNFLVEASTILAASLDYEVALNNVAH-LAVPTIAD 851

Query: 588 IGFTDLLKTS 597
               D+L+  
Sbjct: 852 WCAVDILQAD 861



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 98/296 (33%), Gaps = 53/296 (17%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR-KLF 244
           +KL      F++   + D +V+ +D+     W   +Y           ++ IG+S  +LF
Sbjct: 120 QKLRQSEERFRLALSNSDIVVFQQDRDLRYRWI-HNY-----QGVASAEEIIGKSDNELF 173

Query: 245 KEEIKKRMIS----SSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-----GEAGIAIDV 295
              + +++ +        + +  E VS + HG    Y ++    +      G    A+D+
Sbjct: 174 PASVAEKLTAIKQKVLEKDVSVHEEVSVIFHGKVVYYDLLAEPLTIDGQIQGITCAAVDI 233

Query: 296 SKE------------------ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           ++                      ++ L      L +  VA+A  D      + N +   
Sbjct: 234 TERKRSELEKAKLQSKLQKAIEQQDEYLALLNAWLASSPVALAFLDTKLRYVYTNEALAA 293

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQL---NWKTWKENIFSVYKSSETHK----- 389
           +  +  +        + L E+      + +Q+         + +  V   S  H+     
Sbjct: 294 INGVPQSQHIGRTLREVLPEWATQLEPILQQVMATKQPLVNQEVCGVTYPSGVHRCSLVN 353

Query: 390 -DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
                LP+G+ L V VT+           ++T +   E     + +        L 
Sbjct: 354 YYPVCLPDGKLLGVGVTAL----------DITERKQAEDALRYIAQTSNTLSSSLD 399


>gi|312961180|ref|ZP_07775685.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6]
 gi|311284838|gb|EFQ63414.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6]
          Length = 771

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 143/368 (38%), Gaps = 6/368 (1%)

Query: 424 DLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + E       +     ID + + G+      G +   N     +    E  +        
Sbjct: 255 ERERALRDNEERLRLIIDGVKDYGIFALDTAGHVTSWNNGAERIKGYTEQEIIGRHFSLF 314

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                   + E    +       + +  R    GT    S  +                 
Sbjct: 315 YLPEECPQHPEMALREATRDGDYTEEGWRCRKDGTRFWASVVITAQYDGTGALRGFSKIT 374

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++TD   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      + 
Sbjct: 375 RDITDRRAAEIALRTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDAAKT- 433

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q  +V +I  +   LL L+N++LD+A ++AG + LN + + L  +L E    ++   
Sbjct: 434 ---QKAHVGHILRAGQHLLTLINEVLDIAKIEAGSLALNIAPLPLTQVLQEALTLVSPMA 490

Query: 663 HENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            +  I ++ + +       VADRQRL Q+   +LSNA+ ++ +   V ++   D      
Sbjct: 491 TDAGIELQPLPTLAADIGIVADRQRLTQVLLNLLSNAIKYNRRDGQVSIEVTVDAQRIGV 550

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SV + G  I  D    +F  F          G GLGL++ +S +    G + + S     
Sbjct: 551 SVCDCGKGIAADHLGQLFTPFERLGADPNVEGSGLGLALSKSLLENMDGQLHVHSQAGIG 610

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 611 SRFTLELP 618


>gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
 gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC
           12472]
          Length = 738

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 10/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  +   +A   K+ F+ ++S+E+R+P+  IIG + L   +    L+ +Q  Y+  I 
Sbjct: 1   MREAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRT---DLDDQQRNYIGKIH 57

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            + T LL ++NDILD + V+AG ++L      L+D+L+ V   +A K  +  + +   + 
Sbjct: 58  NAGTSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFETA 117

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFI--FSVKNNGSS 729
           G +    V D  RL Q+ + +  NA+ F+  G  S +I +  R        F V + G  
Sbjct: 118 GDVPQGLVGDALRLGQVLTNLAGNAIKFTETGQVSIIIGQVERIGDKVQLKFCVHDTGIG 177

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + E+    +F  F        RR  G GLGL+I +  + L GG + + S+    ++    
Sbjct: 178 MSEEQQSRLFQAFSQADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESAPGWGSSFIFS 237


>gi|77359607|ref|YP_339182.1| sensory transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874518|emb|CAI85739.1| conserved protein of unknown function ; putative sensory
           transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 893

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 119/238 (50%), Gaps = 6/238 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L        +A+++K+ F+ ++S+E+R+PLT I+GFT+ L  +   + N    Q++  I
Sbjct: 398 QLELAIGQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKITNN---KQHLSTI 454

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S  LL L+N+ILDL+ ++A  + +  + + +  L+++++  I     +  +++ +  
Sbjct: 455 LRNSKHLLELINNILDLSKIEAEKIAVEQAPLNVVRLMHDIESIIEPLAQQKKLKLSINY 514

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              L     +D  RL QI   I SNA+ F+ +G   I      + + +F ++++G  + E
Sbjct: 515 QLPLPHTINSDETRLKQILINIASNAVKFTEQGHVSITVHYLPSQELMFVIQDSGIGMVE 574

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              K +F  F        RR  G GLGL I ++     GG +++ S  +  +     I
Sbjct: 575 SQIKRLFTPFEQADATTTRRFGGTGLGLCISKNLAQRLGGDITVKSELDVGSCFTITI 632


>gi|50120141|ref|YP_049308.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium atrosepticum SCRI1043]
 gi|49610667|emb|CAG74112.1| two-component system sensor protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 951

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 161/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     N L+    +R     
Sbjct: 350 QLEENEQFNRKIVASAPVGICILRINDGTNILSN----ELAHNYLNLLTHEDRLRITRII 405

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +          F  ++TS +   +         +++V             +   ++V+
Sbjct: 406 CKQQSK-------FVDVMTSRNHHLQISFVHSRYRNENV------------AICVLLDVS 446

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL    
Sbjct: 447 ARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPKDA 503

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +    + +  
Sbjct: 504 NRLVVAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKR 563

Query: 667 IRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +   I+     S   D  RL Q+ S +LSNA+ F+  G  +I +    +G   F V++
Sbjct: 564 LTLYCFIAPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIIFEVGCRDGYLEFVVRD 622

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I S     + 
Sbjct: 623 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 682

Query: 784 INCRIPS 790
              RIP 
Sbjct: 683 FGVRIPL 689


>gi|312961453|ref|ZP_07775956.1| two-component hybrid sensor and regulator [Pseudomonas fluorescens
            WH6]
 gi|311284348|gb|EFQ62926.1| two-component hybrid sensor and regulator [Pseudomonas fluorescens
            WH6]
          Length = 1381

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/505 (17%), Positives = 197/505 (39%), Gaps = 23/505 (4%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +K    +    +   ++ +  +A    D+N  +++      +L+ +              
Sbjct: 746  TKVEETDKVNDYLTNLIASTDIATVFVDRNMRIRWFTPRATDLFSMLP------------ 793

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-----G 410
            ++  RS   +  +L++    ++  +V++S    +      +G+     +           
Sbjct: 794  VDTGRSLMDITHRLDYPHMTDDAATVFESLSIIEREISSKDGRWYIARLLPYRSSEDHID 853

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKT 469
            GT+  F ++T +   E +     +      +   +  + +    G I   N     ++  
Sbjct: 854  GTVLTFIDITKRRQAEEELRLGEERMRLVAESTHDFAIIILNDHGAITDWNTGAELIFGY 913

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             ++ +  G +   I +   R     +     A      +DER  ++        S     
Sbjct: 914  TKDEVL-GAYYDLIFSPEDRSAGIPESELRAAREHGRGEDERWHVRKDGSRFYCSGEVTL 972

Query: 530  IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +        +    ++T   R +   +++    +    +K+ F   +S+EL+ PL  I  
Sbjct: 973  LKSASLQGYVKIARDLTGHKRTQDEQSQRLRETQTNSHLKDEFFAVMSHELKHPLNLIQL 1032

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              +LL+        +   + VE I  + +    +++D+LD+A V  G +KL    + L  
Sbjct: 1033 NAELLRRLPATKTAAPAVRAVETICEAVSSQARIIDDLLDVARVRTGKLKLKKQPVDLIR 1092

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
             L ++   +    H   + ++  S+       AD  R+ Q+   +++NA+ F+ +   V 
Sbjct: 1093 TLQDIHSVVLADGHHRQVTLQTPSEPGALIVDADPTRIEQVIWNLVNNALKFTPQDGQVQ 1152

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFIN 766
            L  +R NG     V ++G+ + +D  + +F+ F    +     QR G+G+GLS+V   + 
Sbjct: 1153 LVLSRSNGHAQLDVIDSGAGLADDSLEKIFDLFGQAENQHQTHQREGLGIGLSLVRQLVE 1212

Query: 767  LHGGHVSISSSDEG-VTTINCRIPS 790
             H G VS+ S   G   T + R+P 
Sbjct: 1213 AHDGLVSVHSKGLGFGCTFSIRLPL 1237


>gi|119963101|ref|YP_946860.1| signal transduction histidine kinase domain-containing protein
           [Arthrobacter aurescens TC1]
 gi|119949960|gb|ABM08871.1| putative signal transduction histidine kinase domains protein
           [Arthrobacter aurescens TC1]
          Length = 541

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/402 (21%), Positives = 167/402 (41%), Gaps = 29/402 (7%)

Query: 397 GQTLHVIVTSNPRGGTIWMFEN--LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           G ++ V+  S  R       ++  L   +D+ TK   L+      ++ L  GV     DG
Sbjct: 161 GVSVSVLTLSMVRQQRALELKDEALKEALDVSTKQERLL---NTVMETLPLGVVAVDGDG 217

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
              L N   R          +                NES      +   T    +R+ +
Sbjct: 218 HDILMNRRQRQTHALATPPDNDDP-------------NESQLLIFESDRTTPLAVDRRPV 264

Query: 515 QGTL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI--KN 570
           +  +  E  +D ++         A T      V D+ +   ++   ++     + +  K+
Sbjct: 265 RRAVLGERFTDQLVWLGSGADQRAFTASARPMVDDAGKFAGSVVVFSDVTDLVNALAAKD 324

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            FV +VS+E R+PLT+I+G+ +L+      +L+++  + ++ +  ++  LL LV+D+L  
Sbjct: 325 DFVANVSHEFRTPLTSILGYVELILDDP-DALDARARKQLDIVRRNAERLLTLVSDLLV- 382

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
             V +G + +    + + +L+     S   +  +  IR+ +     L + V D  R+ Q+
Sbjct: 383 --VRSGQIVIQPHAVDVAELVRGSVNSAEPRAAKAGIRLSMDIPEALEAHV-DSSRIAQV 439

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              ++SNA+ +S  G  V + A  D       V + G  + E+     F +F        
Sbjct: 440 LDNLVSNAIKYSPDGGNVEVAAWEDQDFVFCRVTDTGMGMNEEEQAEAFTKFFRAGGVRN 499

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               GVGLGL I ++ +  HGG + ++S     TT   +IP+
Sbjct: 500 STIPGVGLGLPISKAIVEAHGGTIMVASEPGQGTTFTVKIPA 541


>gi|75909212|ref|YP_323508.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702937|gb|ABA22613.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 498

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 151/376 (40%), Gaps = 9/376 (2%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT--H 479
           +  LE             ++ +S+ V      G +   NPA   +    +          
Sbjct: 122 KHRLERDIRENRDRLATLLNSISDAVIATDEFGNVTFMNPAAEEITGWHQADAIGHEVSQ 181

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNA 536
           I NI    +    E+    +       + DE  SL    G    + DS      +P    
Sbjct: 182 IFNIIDEVTENVLENPVTKVLREQKVVYLDEYTSLITKDGRRVPIGDSASPIMGLPNKIN 241

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             ++ F ++++  + E  L +  +  R+ + +K+ F+  VS+E R+PL+ I    +L++ 
Sbjct: 242 GVVIVFWDLSERRQTE-LLEQALQKERELNNLKSLFISTVSHEFRNPLSVIQTAIELIEL 300

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  +K++ Y++ I  +   +  L+ D+L +   DA  +  N   + L     E+ +
Sbjct: 301 HGQNLTETKKNTYIKRIKGAVQSMKLLMEDVLFMGKSDAAKLDCNPVLLNLKGFCQELIE 360

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
              T +  +   I      +  +   D + L  IF  +LSNA+ +S +  T+      D 
Sbjct: 361 EFTT-VEISGHEIIFTCSDETTNAFMDERLLHYIFVNLLSNAVKYSPQNETIRFDLTFDQ 419

Query: 717 --GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
             G  IF +++ G  IP      +F  F   ++    +G GLGL IV+  +  H G ++ 
Sbjct: 420 TKGVAIFRIQDEGIGIPVADQTHLFESFYRASNSQSIQGTGLGLVIVKRCVEAHKGEIAF 479

Query: 775 SSSDEGVTTINCRIPS 790
           +S +   TT    +P 
Sbjct: 480 NSQEGVGTTFTITLPL 495


>gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
 gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
          Length = 1125

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 135/309 (43%), Gaps = 23/309 (7%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           A    +  N +D  D    +  SF   ++S++  L L+ +                    
Sbjct: 391 AGDLDQKINNTDREDEIGRLAVSFARMQRSVRDKLALIRE-------------------- 430

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +  +  + + +KNE L++AD +K+ F+   S+ELR+PL  ++G  + +     G L 
Sbjct: 431 QNKELEQNIQLIKQKNEELQQADRMKDDFLATTSHELRTPLHGMVGIAESMLAGAEGPLP 490

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q   +  I  S   L NLV+D+LD   +  G ++++   +   + +  V +  +  + 
Sbjct: 491 ERQKHQLRMIINSGERLSNLVDDLLDYHKMRYGDVEISPQAVDTANAVRLVIELSSRLLG 550

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              +RI       L    AD QRL Q+   ++ NA+ ++ +G  +I+ A    G     V
Sbjct: 551 GKPVRIINQVPIDLPLVRADGQRLEQVLYNLIGNAIKYTDEG-KIIISATVLQGQLRIQV 609

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP D  + +F             R+G GLGLSI    I++ GG + +SS     
Sbjct: 610 VDTGQGIPSDQLEYIFEPLTQARESNTQYRQGAGLGLSISRQLIDIMGGQLYVSSQPMVG 669

Query: 782 TTINCRIPS 790
           TT +  +P 
Sbjct: 670 TTFSFTLPL 678


>gi|227328226|ref|ZP_03832250.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 935

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 161/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     N L+    +R     
Sbjct: 334 QLEENEQFNRKIVASAPVGICILRINDGTNILSN----ELAHNYLNLLTHEDRLRITRII 389

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +          F  ++TS +   +         +++V             +   ++V+
Sbjct: 390 CEQQSK-------FVDVMTSRNHHLQISFVHSRYRNENV------------AICVLLDVS 430

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL    
Sbjct: 431 ARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPQDA 487

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ V  ++ SS++LL +++DILD + +++  +K+       +++++ +  +    + +  
Sbjct: 488 NRLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYLPLVVKKR 547

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    D  +  S   D  RL Q+ S +LSNA+ F+  G  +I +    +G   F V++
Sbjct: 548 LTLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIIFEVGCRDGYLEFVVRD 606

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G ++I S     + 
Sbjct: 607 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 666

Query: 784 INCRIPS 790
              RIP 
Sbjct: 667 FGVRIPL 673


>gi|237808149|ref|YP_002892589.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500410|gb|ACQ93003.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 675

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 124/265 (46%), Gaps = 15/265 (5%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + +         A++++ +  +  + A++ K+ F+  +S+E+R+PL  +I  ++LL  ++
Sbjct: 142 LTSCRQYQRLKLAQQSMIQARDEAQAANKAKSHFLATMSHEIRTPLNAVINLSELLLETQ 201

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q +  + +      LL LVND+LD + ++AG ++L  ++  L+DLL+ +    
Sbjct: 202 ---LDDRQRKLTQGVCEGGRSLLQLVNDVLDFSRIEAGRLELVTTSFRLHDLLDGLASLF 258

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
             +     +   +     +   + AD  RL QI   +L+NA+ F+ KGS  + ++    N
Sbjct: 259 EKEAVIKKLHFGLSISPDVPDVIAADPSRLRQILQNLLANAIKFTEKGSVSIAVRMLAAN 318

Query: 717 GD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
                      IF + + G  I E   + +F  F         +  G GLGL+I    + 
Sbjct: 319 QQKPPDSVPMMIFHISDTGIGISESDQQRLFQEFSQVDTNLDRRFGGSGLGLAIAARLVM 378

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           L GG +   S     +T    +P+K
Sbjct: 379 LMGGKIGCHSVAGIGSTFWFTLPAK 403


>gi|302338211|ref|YP_003803417.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635396|gb|ADK80823.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 603

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 163/377 (43%), Gaps = 22/377 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           LT ++D  T+    ++     +  ++E V V   +  I   NPA   L  +  + +   +
Sbjct: 241 LTSRIDEVTRQKQELE---AVLTGMNEAVIVLDRNLVITEINPAAARLVSSSYDPVIGKS 297

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            I+ +  T    + +                 R   Q +L +  ++   +  +     + 
Sbjct: 298 LIQVMRNTELNTFAQEALVA------------RGVRQCSLVIPGEAKEIHLQVNASTIEA 345

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    N     +    +      L++ + ++  FV +VS+EL++P+T+I GF + L    
Sbjct: 346 VTADKNSRYPQQRLILVMNDITTLKQLERMRKEFVANVSHELKTPITSIKGFVETLLDGA 405

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK--LNYSTIVLNDLLNEVKQ 656
           +        +++  +   +T L N+++D+L L+ ++    +  ++   I L   +NE   
Sbjct: 406 IDD-RENAFRFLTIVQNQTTRLGNIIDDLLTLSRLEQNDEESGISMEKIPLCHPVNEAIS 464

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +  E +I I V  D +L   + +   + Q    ++ NA+ +  +GS V+++  R+ 
Sbjct: 465 ICQGRADEKSIDIHVECDREL-EILGNGHLIEQAVVNLVDNAVKYCPEGSVVLVRCEREE 523

Query: 717 GD-FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               +  V++NG  IPE   + +F RF     A      G GLGL+IV+  + LHGG V+
Sbjct: 524 DRRILLVVQDNGPGIPEADQERIFERFYRVEKARSRDMGGTGLGLAIVKHIMLLHGGTVA 583

Query: 774 ISSSDEGVTTINCRIPS 790
           + SS     +   R P+
Sbjct: 584 LESSRGEGASFLLRFPA 600



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 73/253 (28%), Gaps = 15/253 (5%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
             +  S++    F  +      G  +       L    +A      S+   V  Q     
Sbjct: 201 AAISKSASAYARFDFSQPIHVDGPAEIVNTADALQKMAQAL----TSRIDEVTRQKQELE 256

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
            +L  +  A+ + D+N  +   N +   L       +        L++ +R+        
Sbjct: 257 AVLTGMNEAVIVLDRNLVITEINPAAARLVSSSYDPVIGK----SLIQVMRNTELNTFAQ 312

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV----TSNPRGGTIWMFENLTVQVDL 425
                +             K+     N  T+  +     +  P+   I +  ++T    L
Sbjct: 313 EALVARGVRQCSLVIPGEAKEIHLQVNASTIEAVTADKNSRYPQQRLILVMNDITTLKQL 372

Query: 426 ETKYNTLVKV---QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           E      V     + +T     +G      DG I     AFR L   +      G  I +
Sbjct: 373 ERMRKEFVANVSHELKTPITSIKGFVETLLDGAIDDRENAFRFLTIVQNQTTRLGNIIDD 432

Query: 483 IAATCSRYYNESD 495
           +        N+ +
Sbjct: 433 LLTLSRLEQNDEE 445


>gi|229010405|ref|ZP_04167609.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
 gi|228750825|gb|EEM00647.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
          Length = 896

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 15/251 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L EK   + ++ + K+ F+ ++S+ELR+PL +I+  +++L+ +    L+  + +    I
Sbjct: 481 ELEEKASEILRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVI 540

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-I 672
            +S   LL L+NDILDL+ V+AG + + +    ++D+   ++Q+      + N+ + +  
Sbjct: 541 HSSGKDLLTLINDILDLSKVEAGKLDVIFEATNISDMAANMQQNFLHIAAQKNVELTIAD 600

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARD-----NGDFI 720
           SD     F  D +R+ QI   +LSNA  F+ KGS             + D          
Sbjct: 601 SDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWMT 660

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SVK+ G  I  +  + +F  F         +  G GLGLSI + F  L GG +++ S+ 
Sbjct: 661 ISVKDTGIGIATEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNL 720

Query: 779 EGVTTINCRIP 789
              +T    IP
Sbjct: 721 GEGSTFTVYIP 731


>gi|225568760|ref|ZP_03777785.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM
           15053]
 gi|225162259|gb|EEG74878.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM
           15053]
          Length = 806

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 182/461 (39%), Gaps = 42/461 (9%)

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHL---PNGQTLHVIVTSNPRGGT------IWMFE 417
           E  N    +E +   ++              P+G +  +   +  R G       + +F 
Sbjct: 181 ETFNAHFSREAMLHAFEHGRKRITKRLRRLSPDG-SYRMAEFAAARIGREEDCWCVLVFH 239

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++  +  +E + N  +           + +                RS  K  E+     
Sbjct: 240 DVHEEFLMEQQLNVEISQLATAAKAAYQMLIAVNLTQNTYHMLEYERSQVKRPEDTGCFD 299

Query: 478 THIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--------------- 521
             I+  +      Y +E  G    +A+I ++    + +   +  L               
Sbjct: 300 DLIKFELDTVHPDYRSEFIGKFRRSALIDTYLGGERIVSMEVPHLGADGVYHWNFTQVVR 359

Query: 522 -----SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                +D ++E ++    + +  +    +    R ++ L E  E   +  + K+ F+  +
Sbjct: 360 VESPHTDDLIEITLSRNIDEERRIQEETIEKERRTKQILEEALEKAERTGQAKSDFLSRM 419

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+++R+P+  IIG T+L   +       K  +Y++ I+ S   LL+LVN++LD++ +++G
Sbjct: 420 SHDIRTPMNAIIGMTELALMNTGN--EEKIKEYLKTIAGSGERLLSLVNEVLDVSKIESG 477

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
             +L      L +L++EV +       + +    V  + ++ +  +AD  R+ QI   +L
Sbjct: 478 TFELAEKEADLCELVDEVAEMFRVTTEKMHQTFVVHVEKEIHARVLADAGRINQILVNVL 537

Query: 696 SNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +NA  ++ +G  + L            G + F+V++NG  +  +  + +F  F       
Sbjct: 538 ANASKYTEEGGMLSLSLRELKKEENQVGTYQFTVEDNGIGMKPEYVEHIFEPFSRADDSR 597

Query: 750 --QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  G GLG++IV + +++  G + + S     +     +
Sbjct: 598 ISKIAGTGLGMTIVRNLVSMMDGDIQVESEYGKGSKFIITL 638


>gi|224539126|ref|ZP_03679665.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519257|gb|EEF88362.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 774

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 134/248 (54%), Gaps = 12/248 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +   AER L    E   +++ +K++F+ ++S+E+R+PL  IIGF+ +L  ++      ++
Sbjct: 533 ERKIAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILAMTE---DEEEK 589

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +YV  I  ++ ILL L+ND+LDL+ ++AG++ L YS   LN +L  +K  + +++ +  
Sbjct: 590 KEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFGLNGVLATLKGVVESRLQD-- 647

Query: 667 IRIKVISDGKLG---SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            R+ +I +  +       +++ RL Q+    L+NA  F+S GS +       + D  + V
Sbjct: 648 -RVDLIFEPGMPDDYVVYSEKNRLQQLVLNFLTNACKFTSTGS-IRYGYEVRDKDIYYYV 705

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G+ IPED    +F RF+       ++G GLGL I +  I   GG + ++S     +T
Sbjct: 706 TDTGTGIPEDKLHLIFERFIKLDSF--KQGTGLGLPICQLIIQNMGGEIGVNSKLGEGST 763

Query: 784 INCRIPSK 791
               +P K
Sbjct: 764 FWFTLPLK 771


>gi|78355591|ref|YP_387040.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217996|gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 981

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 143/325 (44%), Gaps = 23/325 (7%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           I  ++A  +    ES  +D    I    DDE   L  ++  +   +           + +
Sbjct: 185 IVPLSALTAWVRRESPLYDYGTRIPKQADDELGELVDSMNGMLSEI-------EKRDRML 237

Query: 540 LTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  + + AER   L        +A + K  FV  +S+ELR+P+  IIG  ++   +
Sbjct: 238 NDHSKHLEKLVAERTQELEHARHTAEQASKAKGDFVASMSHELRTPMNAIIGMIEIALKT 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L  KQ +Y+  I +S+  LL +VNDILD++ ++A  M+L +      ++L EV   
Sbjct: 298 E---LTVKQREYLTIIRSSARSLLGVVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDL 354

Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
              ++    + + +  +  + +  V D  RL Q+   +++NA  F+ +G   + +     
Sbjct: 355 FRERVGMKGVELVLDIEADVPAVLVGDPLRLKQVLVNLVTNAFKFTKQGEVRIRVAVGSR 414

Query: 716 NGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
           + D +   FSV++ G  I E+    +F+ F        R   G GLGLSI    + L GG
Sbjct: 415 SQDVVQLEFSVRDTGLGIGEEARNRLFDTFSQAEGSTARLFGGSGLGLSIARELVRLMGG 474

Query: 771 HVSISSSDEGVTTINCR----IPSK 791
            ++++S     +         +P +
Sbjct: 475 TITVASEPGKGSDFRFTGRFSLPVE 499


>gi|116619022|ref|YP_819393.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097869|gb|ABJ63020.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 623

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 143/389 (36%), Gaps = 34/389 (8%)

Query: 412 TIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
                 +L+ +++      N         + H+++GV      G + + N A        
Sbjct: 243 LALSVNDLSTRIEESTETVNAERNRLDSVLTHMADGVLAANRRGEVTIINQAAADFV--- 299

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                 G +  +            +G      I+ + +D R  L    + L   +   S+
Sbjct: 300 ------GVNREDALGQNVVSLLRLEGKRTLRDILENLNDFRVDLSDDSKELLVQIY-VSL 352

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           I   +       V + D    +R            D  +  FV +VS+ELR+PLT++  +
Sbjct: 353 IKRQSGFISGLVVVLHDITEQQR-----------IDSERRMFVSNVSHELRTPLTSVRSY 401

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            D L    +         ++  +   +  ++ ++ND+L+L+ +D G M++    I LN L
Sbjct: 402 VDALAEGAIDD-PEMAQNFLGVVQDETQRMIRMINDLLELSRLDQGTMEVKLEVINLNSL 460

Query: 651 LNEVKQSIATKMHE---------NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            N V       +            N  I      +      D  +  Q+   I++NA+ +
Sbjct: 461 FNFVLNRFDMILESDAKNENTITKNYNILREFTKEDVWVEVDPDKFTQVLDNIMNNAVKY 520

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           S  G T+  +  +     I S+ + G  IP     ++FNRF        R   G GLGL+
Sbjct: 521 SPDGGTITARLIKTKTRAILSISDQGLGIPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLA 580

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +  +    G + + S +   +T    +
Sbjct: 581 ISKEVVEKFNGRIWVDSVENKGSTFYISL 609


>gi|330808383|ref|YP_004352845.1| histidine kinase, Unorthodox [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376491|gb|AEA67841.1| putative Histidine kinase, Unorthodox [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1187

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 155/375 (41%), Gaps = 14/375 (3%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E   N  ++     ++     + V   +G ++  N ++   +  +   +     +    
Sbjct: 552 AELALNDQLEFMHSLLNGTPHPIYVRDRNGILQSCNDSYLQTFDVKREDVIGKNLMPGSM 611

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFV 543
           +           +    A  T+   +R    G  +L +   +L Y          +  ++
Sbjct: 612 SNAFEAQEYQADYQRVMAEGTALIVDRPLHIGDRQLTIYHWILPYRNSAAEVQGIIGGWI 671

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSL 602
           ++++  +    L    +    A+  K++F+  +S+E+R+P+  +IG  +L LK +  G +
Sbjct: 672 DISERRQLFEELRASKQRADDANRAKSTFLATMSHEIRTPMNAVIGMLELALKHADKGHV 731

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +      +E    S++ +L L+ DILD+A +++G + L    + L  LL  V +      
Sbjct: 732 D---RSTIEVAYESASGMLELIGDILDIARIESGHLSLAPERVNLRALLQSVIRVFEGVA 788

Query: 663 HENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD- 718
            + N+ + +  D        + D  R  Q+ S ++SNA+ F+ +G   + ++ +  + D 
Sbjct: 789 RQKNLALSLQFDAAEGSPDVLMDPLRFKQVLSNLISNALKFTEQGQVAIKVRLSPTDRDD 848

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVS 773
                  V ++G  I     + +F  F    +  +  R G GLGL I  +   + GG + 
Sbjct: 849 ALQMHLEVNDSGIGIGPADLQRLFEPFAQVDNTRRMARNGAGLGLVISRNLCQMMGGSLH 908

Query: 774 ISSSDEGVTTINCRI 788
           ++S     T +  R+
Sbjct: 909 MNSQPGTGTQVQVRL 923



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 68/190 (35%), Gaps = 17/190 (8%)

Query: 146 ETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL 205
            T N   +++ G   G      +     +  ++ +       L++ +     L +     
Sbjct: 515 RTYNRLFLQV-GAGIGLLLLFSLAWNAYMQRQIRQRQRAELALNDQLEFMHSLLNGTPHP 573

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK-EEIKKRMISSSALEKNFCE 264
           ++ RD+ G +   N SY +   T  +  +  IG++          +     +  ++   E
Sbjct: 574 IYVRDRNGILQSCNDSYLQ---TFDVKREDVIGKNLMPGSMSNAFEAQEYQADYQRVMAE 630

Query: 265 TVSTLEH-----GNNKS---YKIVRVLNSF----GEAGIAIDVSKEITVNDQLTHTYEIL 312
             + +       G+ +    + I+   NS     G  G  ID+S+   + ++L  + +  
Sbjct: 631 GTALIVDRPLHIGDRQLTIYHWILPYRNSAAEVQGIIGGWIDISERRQLFEELRASKQRA 690

Query: 313 HNLTVAIAIF 322
            +   A + F
Sbjct: 691 DDANRAKSTF 700



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 52/144 (36%), Gaps = 3/144 (2%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E+ +NDQL   + +L+     I + D+N  LQ  N S+++ +++    +         +
Sbjct: 552 AELALNDQLEFMHSLLNGTPHPIYVRDRNGILQSCNDSYLQTFDVKREDVIGKNLMPGSM 611

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVTSNPRGGTIWM 415
                A +   Q +++       ++      H     L      L    ++    G I  
Sbjct: 612 SNAFEAQEY--QADYQRVMAEGTALIVDRPLHIGDRQLTIYHWILPYRNSAAEVQGIIGG 669

Query: 416 FENLTVQVDLETKYNTLVKVQGET 439
           + +++ +  L  +     +   + 
Sbjct: 670 WIDISERRQLFEELRASKQRADDA 693


>gi|320103763|ref|YP_004179354.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera
           pallida ATCC 43644]
 gi|319751045|gb|ADV62805.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera
           pallida ATCC 43644]
          Length = 460

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 151/399 (37%), Gaps = 33/399 (8%)

Query: 404 VTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
           V S P       F  +   +        +  +     ++ + EGV V   D R++ +N +
Sbjct: 51  VRSTPHRRPAECFNAIAPALRSRIAALESDRQQFRAVLESMIEGVLVVDADRRLRYANAS 110

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ----GTL 518
             +L+             R +                  A +      R  +      ++
Sbjct: 111 AENLFGLGP---------RAVGRLIHELIRSPSIHRAVEATLAGQSAHRDEVSLVGGESV 161

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             L+  +L  +  PL                RA   +      LR+ + ++  FV +VS+
Sbjct: 162 PRLNAKILAVNGTPLSG------------PPRAALLVFHNITELRRLERMRQDFVANVSH 209

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++PL +I  + D L    L        ++V  I   +  L  L++D+L LA +++G  
Sbjct: 210 ELKTPLASIRAYADSLLDWALED-PEITRRFVSQIDEQAERLDVLIHDLLSLARIESGQD 268

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSN 697
            + +  + L  L+    +S   +    N+ +  +++     + +AD + L QI   ++ N
Sbjct: 269 LITFRPLALAPLVERRVESFRDRAQSRNVSLSFVTELPPQFTILADEEALRQILDNLIDN 328

Query: 698 AMDFSSK-GSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRR 752
           A+ +SS     V +    D   G     V +NG  I  +    +F RF         +R 
Sbjct: 329 AIKYSSDVDPWVKVVCRGDGEAGMVAIDVIDNGLGIASEEQTRIFERFYRVDKARSRERG 388

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGL+IV+  +    G + + S     +    R+P +
Sbjct: 389 GTGLGLAIVKHLVQALRGEIELQSRVGAGSRFTVRLPRQ 427



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 58/197 (29%), Gaps = 26/197 (13%)

Query: 244 FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
               ++   I +  L +              +S    R    F     A+  S+   +  
Sbjct: 21  LALRLRAAAIQAEELARGLSALDQNRPIWPVRSTPHRRPAECFNAIAPAL-RSRIAALES 79

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
                  +L ++   + + D +R L++ N S   L+ +             +   +    
Sbjct: 80  DRQQFRAVLESMIEGVLVVDADRRLRYANASAENLFGLGP---------RAVGRLIHELI 130

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT--------LHVIVTSN--PRGGTI 413
           + P      +    + +       H+D   L  G++        L V  T    P    +
Sbjct: 131 RSP------SIHRAVEATLAGQSAHRDEVSLVGGESVPRLNAKILAVNGTPLSGPPRAAL 184

Query: 414 WMFENLTVQVDLETKYN 430
            +F N+T    LE    
Sbjct: 185 LVFHNITELRRLERMRQ 201


>gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
 gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
          Length = 934

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q  Y+  
Sbjct: 272 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKT----PLSATQIDYLHT 327

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++ND+LD + ++AG + L +   +L + ++EV   +A   H+  + + + 
Sbjct: 328 IERSANNLLSIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLN 387

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNG 727
               +    + D  RL Q+ + +L NA+ F+ KG+  + ++    N   +     V + G
Sbjct: 388 VRNDVPEHVLGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIEQRSLNTQAVELEVQVHDTG 447

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F        RR  G GLGL I +  IN  GG ++  S     +T  
Sbjct: 448 IGISERQQSQLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFW 507

Query: 786 CRI 788
             I
Sbjct: 508 FHI 510


>gi|254884267|ref|ZP_05256977.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1467

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G  + +    + D+      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF    +      +G G+GL++ +  I+LH G +   S +         +
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|162457113|ref|YP_001619480.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161167695|emb|CAN99000.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 639

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 137/364 (37%), Gaps = 8/364 (2%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            + +     +D + + V    PDG     N  +        +          +     + 
Sbjct: 128 EVERSLRRILDMMPQLVWSTRPDGYHDFYNRRWYDYTGETPDATHGAGWNDQLHPDDQQR 187

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
             E     +        +   +   G         +          +   T  +V D  R
Sbjct: 188 AWERWVRSVETGEDYQIEYRFRRADGAYRWFLGRAVPMRDDAGRILRWFGTCTDVDDQKR 247

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+   E      +   +K+ F+  VS+ELR+PLT I+G+  +       S      + +
Sbjct: 248 LEQQRAEVLAQAEETSRLKDEFLAIVSHELRTPLTAILGWARM-----QRSRPELAPKAM 302

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  ++     L+ +IL+ + +  G ++L      +N+L+     ++        + + 
Sbjct: 303 EVIERNAEAQARLIEEILESSRIVTGKIRLYPRNASVNELVRTAVDAVRPAADAKAVALD 362

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V  D  +G  V D  RL Q+ + +L NA+ F+  G  V L+ A   G    +V + G  I
Sbjct: 363 VRLDPGVGEIVCDPDRLQQVVTNLLVNAVKFTPGGGQVGLQTALHPGGVEVTVTDTGKGI 422

Query: 731 PEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCR 787
                  VF RF     A   Q  G+GLGL+IV+  + LHGG V   S  +    +   R
Sbjct: 423 SSAFLPHVFERFRQAEAATTRQHGGLGLGLAIVKYLVELHGGAVRAQSDGEGKGASFCVR 482

Query: 788 IPSK 791
           +P +
Sbjct: 483 LPVR 486



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 64/213 (30%), Gaps = 26/213 (12%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIE----GRVSGSCAFLRIL---SL 171
           L+  H   L  A +     G S  +   + +              SG+ AF+ IL     
Sbjct: 55  LRGGHASALRAALD-----GVSRAVPLGSISGAPFTGHYFPIRDASGAVAFVGILFVEER 109

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI 231
                     T +   +       + + D +  LVW     G   + N  +   T  E  
Sbjct: 110 AAPVPAAPALTSETHDIPEVERSLRRILDMMPQLVWSTRPDGYHDFYNRRWYDYTG-ETP 168

Query: 232 VFQKAIGESRKLFKEEIKKR----MISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNS 285
                 G + +L  ++ ++     + S    E    E       G  + +  + V + + 
Sbjct: 169 DATHGAGWNDQLHPDDQQRAWERWVRSVETGEDYQIEYRFRRADGAYRWFLGRAVPMRDD 228

Query: 286 FG----EAGIAIDVSKEITVNDQLTHTYEILHN 314
            G      G   DV  +  +  Q     E+L  
Sbjct: 229 AGRILRWFGTCTDVDDQKRLEQQ---RAEVLAQ 258



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 80/283 (28%), Gaps = 36/283 (12%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS 254
              +   L   V     AG     N +Y+    T      +     R      ++  +  
Sbjct: 10  LDDVIGGLPLPVLVLSPAGVATHENPAYRARFGTRADDRHEIASALRGGHASALRAALDG 69

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI-------------AIDVSKEITV 301
            S        + +         + I     +    GI                 S+   +
Sbjct: 70  VSRAVPLGSISGAPFTG---HYFPIRDASGAVAFVGILFVEERAAPVPAAPALTSETHDI 126

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            +       IL  +   +     + Y  F+NR + +              ND+L      
Sbjct: 127 PEVERSLRRILDMMPQLVWSTRPDGYHDFYNRRWYDYTGETPDATHGAGWNDQL------ 180

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSNP---RGGTIW-- 414
            +   +Q  W+ W  ++    ++ E +  +  +   +G     +  + P     G I   
Sbjct: 181 -HPDDQQRAWERWVRSV----ETGEDYQIEYRFRRADGAYRWFLGRAVPMRDDAGRILRW 235

Query: 415 --MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
                ++  Q  LE +   ++    ET     E +A+   + R
Sbjct: 236 FGTCTDVDDQKRLEQQRAEVLAQAEETSRLKDEFLAIVSHELR 278


>gi|322385036|ref|ZP_08058686.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100]
 gi|321270946|gb|EFX53856.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100]
          Length = 454

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 136/380 (35%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I   N         + + +
Sbjct: 75  INDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T I ++      Y       DL   I    +    S     E +S  V  +++I   
Sbjct: 135 LN-TSILDLLDIADEY-------DLRELITKVPELTIDSQDENGEYVSLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   ++            +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQDKE-----------ERERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L        ++V+     +  ++ +V D+L L+ +D     L+         +  +
Sbjct: 235 DDGALS--EPVAPEFVKVSLTETNRMMRMVTDLLSLSRIDNNTSHLDVELTNFTAFITYI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +       I             D  ++ Q+   I++NA+ +S  G T+ + 
Sbjct: 293 LNRFDKIKNQDETKKYEIIRDYSITPIWVEIDTDKMTQVIDNIMNNAIKYSPDGGTITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  H 
Sbjct: 353 VRTTDVQLILSISDEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHH 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|309792572|ref|ZP_07687034.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308225386|gb|EFO79152.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 720

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 6/259 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + + + T  N   S  A   LT     L++A++ K++F+  +S+ELR+PL  I+GFT  L
Sbjct: 466 DVELLETLTNQIASAYARARLT---RDLQRANQAKSAFLASMSHELRTPLNAILGFTGTL 522

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                G L   Q + +  I  S+  LL L+NDILDLA +++G ++L  +T++  ++L+EV
Sbjct: 523 LMRLPGPLTESQERQLSTIKRSAQHLLALINDILDLARIESGRLELRLTTVLAQEVLHEV 582

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +     +  ++ ++ +         D + L QI   +++NA+ F+  G  V +    
Sbjct: 583 IAELRPLAEQRGLQFQMDAPESPLPLTTDLRILRQILINLVNNAIKFTDVGE-VHVSLRC 641

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +    +F V++ G  I  +    +F  F    +     R G GLGL +        GG V
Sbjct: 642 ETQALLFVVRDTGIGIKPEDQARLFADFGRINSVDVHTREGTGLGLRLAYRLAEALGGTV 701

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S     +T   R+P +
Sbjct: 702 TLQSEYGVGSTFTLRLPYR 720


>gi|153831971|ref|ZP_01984638.1| para-aminobenzoate synthase [Vibrio harveyi HY01]
 gi|148871969|gb|EDL70792.1| para-aminobenzoate synthase [Vibrio harveyi HY01]
          Length = 566

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 133/260 (51%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  +   ++   S++ E  L ++ E    +++    FV  +++ELR+PL  ++G  DLL 
Sbjct: 175 SDLVHGVISRHLSLQREVELRKRAE---ASEKATKEFVAMINHELRTPLNGVLGSADLLD 231

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    L+ +Q QY+  +  S  +L  ++ND+LD + ++AG+M++        DL N + 
Sbjct: 232 KTV---LDDEQQQYLSNLIHSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALT 288

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              A K  E  I   +     +  F + D +R+ QI   ++ NA+ F++ G  V L+   
Sbjct: 289 GVFAAKAAEKRIHFSIDKKLGIPEFLIGDFERITQILVNLIGNAIKFTNLGGVV-LRVEW 347

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
            NG   F V++ G  IP +  K++F+ FV      +R   G GLGL+I ++ ++L GG +
Sbjct: 348 HNGYANFEVEDTGIGIPLEAQKALFDPFVQADRSTKRSFEGSGLGLAICKNLVDLMGGDI 407

Query: 773 SISSSDEGVTTINCRIPSKE 792
           S +S     T    +IP K+
Sbjct: 408 SFASVPRQGTIFKLKIPLKQ 427


>gi|330831800|ref|XP_003291944.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum]
 gi|325077858|gb|EGC31544.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum]
          Length = 1468

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/358 (23%), Positives = 148/358 (41%), Gaps = 30/358 (8%)

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            GV      G +  +N             L  G                 + +++ A  + 
Sbjct: 747  GVMFSTFKGIVLDANDMLLQTIGYTRGDLEEGK-------IDWMLLTPPEYFEISARALQ 799

Query: 506  SFDDER--KSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                +R  + ++      S   +   I   + +  T      V D  R  +A      A 
Sbjct: 800  ELKSKRWCQPIEKAYTHKSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQA----ELAA 855

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             +A  +K  F+ ++S+ELR+P   I+G + LL  S   +L   Q   V+ I  S+  L++
Sbjct: 856  IEATRLKTQFITNISHELRTPCHGIVGMSQLLLDS---NLTPTQRDNVDSIKRSTDSLIS 912

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD---GKLGS 679
            L+NDILD + ++ G + L   +  L  ++ EV +S  + ++   I +             
Sbjct: 913  LINDILDFSKLEYGKVTLENESFELLPMIEEVLESQTSVVNHKGIDLIFTMGRDYPVPPV 972

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGD---FIFSVKNNGSSIPEDM 734
               DR  L ++   ++ NA  F+  G  V+L+ + D  +GD     F+VK++G  IPED 
Sbjct: 973  IFGDRNSLKKVLLNLVGNATKFTESG-FVLLEISTDYVSGDQISLRFTVKDSGIGIPEDK 1031

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS--SDEGVTTINCRI 788
             + +F  F  V  +   +  G GLGLS  +  + L GG++ + S   D   TT    I
Sbjct: 1032 IEQIFIPFGQVDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQDGKGTTFWFSI 1089


>gi|302187407|ref|ZP_07264080.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae 642]
          Length = 645

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 119/252 (47%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L    E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+ +     +Q
Sbjct: 245 EQQRSVAQLIHTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHM---THEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      + N
Sbjct: 302 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRN 361

Query: 667 IRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIFS 722
           + +++     L   + + D  R+ QI   ++ NA+ F+ +G   V ++ A  D     F+
Sbjct: 362 LLLELHIQPGLEGMNVIGDPTRIRQILVNLIGNALKFTEQGKVCVEVRWAMLDAERLHFT 421

Query: 723 --VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V+++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S +
Sbjct: 422 CAVQDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESEE 481

Query: 779 EGVTTINCRIPS 790
              +    +IP 
Sbjct: 482 GSGSLFTLQIPL 493


>gi|262404692|ref|ZP_06081247.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC586]
 gi|262349724|gb|EEY98862.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC586]
          Length = 785

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 154/395 (38%), Gaps = 17/395 (4%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +          + +   +  +   + +      +    ID   + +      G     N
Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A   L    E+ L   T         ++   E+D          +++   +   G    
Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNSSITYEQWLEYPDG---- 237

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
              S  E   +P  +       +        ER      E+L KA   K +F+  +S+EL
Sbjct: 238 -RKSFFELRKVPFYSKDGRHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHEL 294

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+G + +L  +    L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L
Sbjct: 295 RTPLNGIVGLSRMLLDT---PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLEL 351

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
             + +   + + E++   A    +  +R  +     L S V  D  RL Q+   +LSNAM
Sbjct: 352 FPAALNFEEFVAELEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLLSNAM 411

Query: 700 DFSSKGSTV-ILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRG 753
            F+ +G  V  + A  D    D    V++ G  IPE   + +F  +             G
Sbjct: 412 KFTKEGGVVMTVSAECDEQYADITIEVEDTGIGIPETELEKIFAMYYQVKSGKDNLHAVG 471

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G+GL++    I L GG +S++S +   +T    I
Sbjct: 472 TGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTI 506



 Score = 45.7 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMLDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS----- 267
           +    N + ++ T   G    + +G +   ++++EI + ++ +     N   +++     
Sbjct: 176 EFSGCNRAMEELT---GKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNSSITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKSFFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|296331265|ref|ZP_06873737.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676252|ref|YP_003867924.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151380|gb|EFG92257.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414496|gb|ADM39615.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1026

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R        L   D +K+ F+   S+E ++PL +II     L   +      ++   +
Sbjct: 411 AFRENEVLTRKLLNIDRLKDEFIAKTSHEFKTPLNSIINICQTLLAGRRKRTIEEEKDNM 470

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +      L NLVNDILDL  +  G+++++   + +  L++             N+ I 
Sbjct: 471 QLVIRMGYRLSNLVNDILDLEKIKQGMLQIHPVPVDIYTLISSEMNFYHLLSRHKNLNIM 530

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSS 729
                 L   +AD  R  QI + ++ NA+ ++++G  + L A++ N + I  +V + GS 
Sbjct: 531 NHIPSGLPLVLADENRFRQIVTNLVDNAIKYTAEG-QITLSASKLNDNMIKVTVTDTGSG 589

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I E   +++F  F       +  G GLGLSIV+  + L  G + + S +   +  +  +P
Sbjct: 590 ISEADRQTIFESFQQAE-TNKDDGAGLGLSIVKQLVELQNGEIWVESEEGKGSAFHFTLP 648

Query: 790 SKE 792
             +
Sbjct: 649 IAQ 651



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 105/313 (33%), Gaps = 65/313 (20%)

Query: 485  ATCSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
              C++        DL   +IT+     D+ K+       +      YS         ++ 
Sbjct: 748  EVCTKIRERFSMVDLPVLMITAAIIGHDKYKAFHAGANDILQKPYHYSEFMARMKNLIMM 807

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  + R E              +IK  F+ +V       L  II  T  L   K   
Sbjct: 808  KHTANQATRME--------MAFLQSQIKPHFLYNV-------LNTIISLTH-LDIEKARE 851

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +  + + Y+               D  + + + +   +L+        +++       T+
Sbjct: 852  VTEEFTNYLRMSF-----------DFQNTSAISSFKHELS--------IISSYLSIEKTR 892

Query: 662  MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSK--GSTVILKAARD-N 716
              +  + I    +  +   +     ++Q    ++ NA+    S K  G  + L A +   
Sbjct: 893  FGDR-LDILFDIEEDIDFIL--PPLMIQ---PLVENAVLHGVSKKRGGGWIKLTAKKQSE 946

Query: 717  GDFIFSVKNNGSSIPEDMCKSV----FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
              +   V++NG+ I  +  K +    F+R V   +  QR      L   + F    G  +
Sbjct: 947  NGYYIKVEDNGAGIAPEKRKDLLSADFDRSVGLKNINQR------L---KHFC---GSEL 994

Query: 773  SISSSDEGVTTIN 785
             ISS+ +  T+++
Sbjct: 995  KISSTPDAGTSVS 1007


>gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS]
 gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS]
          Length = 1610

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 151/347 (43%), Gaps = 40/347 (11%)

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +    +   + ++     +  + S  +E ++ Q  L+  +++ LE     L   +  +
Sbjct: 811  EELEHKQAELQHRNEELQSQSEEVQSQSEELQTQQEELKQTNEA-LEERTKDLEQQKANI 869

Query: 541  TFVN------VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
               N        +  + + AL  K   L  A   K+ F+ ++S+ELR+PL +++    LL
Sbjct: 870  QQKNLALEKTQVEMKKTQVALETKARELELASRYKSEFLANMSHELRTPLNSLLILAQLL 929

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              ++ G+L  KQ +Y + I ++ + LL L+N+ILDL+ V+AG ++++   +   DL+  +
Sbjct: 930  TENRAGNLTDKQVEYAKTIHSAGSDLLTLINEILDLSKVEAGRIEVHAEAVSFTDLVEMI 989

Query: 655  KQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST------ 707
            +Q       E  +  ++     L      DRQRL QI + +LSNA  F+S+G+       
Sbjct: 990  EQKFRHVAAEQKLEFQITVANDLPPILHTDRQRLKQILNNLLSNAFKFTSQGAVKLDIQF 1049

Query: 708  -------------VILKAA-----------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
                         V  +             R+     FSV + G  IP D  ++VF  F 
Sbjct: 1050 LGENTPGYSQQEGVRGRTTPGDFQPDGIKGREKSQIAFSVTDTGIGIPTDKQETVFEAFQ 1109

Query: 744  SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                   RR  G GLGLSI      L GG + + S  +  +T    I
Sbjct: 1110 QVDGSTSRRYGGTGLGLSISRQLARLLGGDILLHSEADKGSTFTLYI 1156


>gi|114046681|ref|YP_737231.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-7]
 gi|113888123|gb|ABI42174.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 935

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/410 (21%), Positives = 161/410 (39%), Gaps = 19/410 (4%)

Query: 390 DTWHLPNGQTLH--VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +  H+ +   L   +  T+ P  G    F+  T   +L    + ++  +   ++     V
Sbjct: 127 EIEHVGDSLILRTPIFATAPPAPGATINFDIQTDNGELLGYISVIINKERALLEQHRAAV 186

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           A F     I L       L+ T     +    I  +    ++         L   +I   
Sbjct: 187 AAF----IIVLIGVQLNLLF-TFRLVKNVTQPITEMVRVVAKIREGKLDARLEGNLIGEL 241

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           D  ++ +      LS+   E           +   +   +    E  L    +   +A  
Sbjct: 242 DLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVE--LDLAKKRALEASR 299

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y+  I  S+T LL ++NDI
Sbjct: 300 IKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYINTIERSATNLLAIINDI 356

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           LD + ++AG M L      L + L E    I+       + + V     +  +   D  R
Sbjct: 357 LDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDAMR 416

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFS--VKNNGSSIPEDMCKSVFNRF 742
           + QI + ++ NA+ F+  GS  V L+   + +   +    V + G  I +     +F  F
Sbjct: 417 VCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTGIGIDDSQQDFLFQAF 476

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                   RR  G GLGL I +  +N  GG +  +S+ +  +     +P 
Sbjct: 477 GQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNFWFTLPL 526


>gi|109898976|ref|YP_662231.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109701257|gb|ABG41177.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 662

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 164/382 (42%), Gaps = 25/382 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSE--GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            ++ L  +   L+  Q + ++ + +  GV  +     + L +         ++       
Sbjct: 136 EKLALLKEQQKLMARQQDILEQMGQVAGVGAW----ELDLVDGKLYWSSVMKDIHEVDQD 191

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSII----PL 533
            + ++    + +Y E +        +    D   +  G  E+++     +++ +     L
Sbjct: 192 FVPDLVNGLN-FYKEGENQTRITQCVRRLMDHGGNFSGEFEIVTQKGTPKWAAVKGKAEL 250

Query: 534 PNAQTML---TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              + +     F ++T+ V +   L  +++ L  A E ++ F+ ++S+E+R+P+  ++G 
Sbjct: 251 DGGKCVRLVGAFQDITEQVNSREQLEHRHKELSLALEARSLFLANMSHEIRTPINGVLGM 310

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             +L      SL+++Q +++     S+T LL ++NDILD   +D+G + L    I LN +
Sbjct: 311 LQIL---DASSLDNEQRRFLGLAKDSATSLLGIINDILDFTKIDSGKLALETVPIDLNQV 367

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           LN           E +I++    +   G S + D  RL QI + +LSNA+ F+ +G   I
Sbjct: 368 LNNCVDIFNPHAKEKSIQLVKQLENTQGASIITDPTRLRQICANLLSNALKFTHQGQVNI 427

Query: 710 LK----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
                   +        VK++G  + ++    +F+ F        R   G GLGLSI   
Sbjct: 428 ATELTLLKKGKATLTIFVKDSGVGMTQEQQALLFSPFSQADVSTTRKFGGTGLGLSITRK 487

Query: 764 FINLHGGHVSISSSDEGVTTIN 785
              L  G VS+ S     +  +
Sbjct: 488 LCQLMSGDVSVKSVLNKGSVFS 509


>gi|332705094|ref|ZP_08425176.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L]
 gi|332356044|gb|EGJ35502.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L]
          Length = 910

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 11/245 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L     A   A++ K+ F+ ++S+ELR+PL  I+G+  +LK S   +++      +  
Sbjct: 431 QELETAKVAADVANQAKSEFLANMSHELRTPLNGILGYAQILKRS--SNISKSDLDGIGI 488

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I    + LL L+NDILDL+ ++A  ++L+ S I     L  V +    +  +  I     
Sbjct: 489 IHQCGSHLLTLINDILDLSKIEARKLELHKSDIHFTSFLMGVVEICRIRAQQKGISFIYH 548

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD----FIFSVK 724
           ++ +L      D +RL Q+   +L N + F+  GS    V L  +  NGD      F ++
Sbjct: 549 AEPQLPVGIYGDEKRLRQVLINLLGNGIKFTDTGSVTFQVSLIGSSLNGDPSHTIRFQIE 608

Query: 725 NNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  +  +  K +F  F      + Q  G GLGL+I    I+L G  + + S+    + 
Sbjct: 609 DTGVGMTPEQLKKIFLPFEQVGDTKKQSEGTGLGLAISMKLISLMGSEIKVESTLGEGSR 668

Query: 784 INCRI 788
               +
Sbjct: 669 FWLDL 673


>gi|158334818|ref|YP_001515990.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF [Acaryochloris marina MBIC11017]
 gi|158305059|gb|ABW26676.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF [Acaryochloris marina MBIC11017]
          Length = 1633

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 11/261 (4%)

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + I L NA             +AER +          +E+K+ F+   S+E R+PLT I+
Sbjct: 1373 AAISLENAYLYEDLQQSQAREQAEREI----------NELKSRFISMTSHEFRTPLTAIL 1422

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            G T+L+K    G   +KQ  Y++ I  +   +  L++D+L L+  D   ++ N   I L 
Sbjct: 1423 GTTELIKHYGQGWDTNKQHTYLDRIQKNVKHMTGLLDDVLVLSKADVNKVEFNPKLINLE 1482

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
               + + +       + + +I+           +D + L QI S +LSNA+ +S + ++V
Sbjct: 1483 VFCSSLVEEFQLN-TKRDQQIEFEFFWNQHEVYSDEKILRQILSNLLSNAIKYSPESTSV 1541

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
              +   +  +  F +K+ G  IPE   + +F  F    + GQ +G GLGL+IV+  + LH
Sbjct: 1542 RFQVNVNEEEATFFIKDQGIGIPEADQQHLFESFHRATNVGQIQGTGLGLAIVKKSVELH 1601

Query: 769  GGHVSISSSDEGVTTINCRIP 789
             G +   S  +  TT   ++P
Sbjct: 1602 RGTIDFESIADQGTTFIVKLP 1622


>gi|304408466|ref|ZP_07390110.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304342551|gb|EFM08401.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 623

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 107/571 (18%), Positives = 216/571 (37%), Gaps = 46/571 (8%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVS---TLEHGNNKSYKI-VRVLNSFGEAGIAIDVS 296
            +L   + + R+            ++        G  +     ++  +     GI  D +
Sbjct: 77  LELVHPDDRVRIEQHRDTNHEGSFSIDFRMIRMDGKVRWMHAQMQATSPHRCVGILQDRT 136

Query: 297 K----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
                E        H Y  + +    I I+  +  +   NR+F  L       +      
Sbjct: 137 AARNLETEARLAHHHLYSFIDHHLDPIVIWRADGIVMSVNRAFTSLLGYSTYEIEGKGIA 196

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG- 411
           D    F+   ++       +   EN  +V   +E  K      +G  LH++++  P  G 
Sbjct: 197 DTP--FIPDEHREQMDRYCRQTIENKTAVTFETERLK-----KDGGKLHILLSITPLVGA 249

Query: 412 ------TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                  I +  + T Q+    K     +     +DH  + +A F  DG+I+  N AF+ 
Sbjct: 250 DGRMDSWISILRDCTEQLAANRKLKEAQEELESFVDHNIDAIAFFNRDGKIRKMNTAFQR 309

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           ++    + L     ++    +  R   E++  +    I++    +    QG  +  +   
Sbjct: 310 MFGWTLDELQA-APVQEYPFSNGR--TEAELRERLEEIMSGKVTKNAEFQGRRKDGTVLP 366

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +  S  P P+   +         ++  R +  ++E L     +       V++E+++PLT
Sbjct: 367 VMVSSTPFPDRNGLAVMFKDMSELKQTRDMLGRSEMLS----VLGQLAAGVAHEIKNPLT 422

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           ++ GF  LL+     SL +K+ +++  +      +  +VN++L L+        + +   
Sbjct: 423 SLKGFARLLE----PSLQNKEQRFIGIMKEELDRIELIVNEMLVLSKPQ----VIMFEER 474

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +++LLN V + + T+    +I IK   +        DRQ L Q+F  +L NA++     
Sbjct: 475 DMSELLNYVIELLGTQAIMKSIEIKKEFEPVPLIACEDRQ-LKQVFVNLLKNAIEAMPGD 533

Query: 706 S----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
                 V L+ A  +      V + G  I  D    +   F       + +G GLGL + 
Sbjct: 534 GHGQIRVSLQQAGHSDSIRIEVSDQGQGIAPDRLARLTEPFY----TTKEKGTGLGLMMT 589

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            S +  HGG +  +S     TT+   +P ++
Sbjct: 590 ASIVERHGGTIHFASELGVGTTVTVTLPIQQ 620



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 131/406 (32%), Gaps = 42/406 (10%)

Query: 70  SKYHSLLTENNCL--TIVWDGKDETPEIIGQLH--QRIDIPQTDTDLLSFENWLKFHHYI 125
            +   L+  ++ +     W    E  ++ G       I +P      +  E +L+  H  
Sbjct: 24  RRKRLLMHASHRMAGIGSWSYNIEKNQLFGTELFFGLIGLPVPPRARMKLEQFLELVHP- 82

Query: 126 KLSKATEKLRKEGQ--SFDLVAETQNDCAIKIEGRVSGSCAFLRILSL---DGIYSELAE 180
                 E+ R      SF +         I+++G+V    A ++  S     GI  +   
Sbjct: 83  DDRVRIEQHRDTNHEGSFSIDF-----RMIRMDGKVRWMHAQMQATSPHRCVGILQDRTA 137

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
                 +            D     +      G ++  N ++           +      
Sbjct: 138 ARNLETEARLAHHHLYSFIDHHLDPIVIWRADGIVMSVNRAFTSLLGYSTYEIEGKGIAD 197

Query: 241 RKLFKEEIKKRMIS-------SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG----EA 289
                +E +++M         +        E +       +    I  ++ + G      
Sbjct: 198 TPFIPDEHREQMDRYCRQTIENKTAVTFETERLKKDGGKLHILLSITPLVGADGRMDSWI 257

Query: 290 GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            I  D ++++  N +L    E     + +   AIA F+++  ++  N +F  ++   L  
Sbjct: 258 SILRDCTEQLAANRKLKEAQEELESFVDHNIDAIAFFNRDGKIRKMNTAFQRMFGWTLDE 317

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           L   P    + E+  S  +   +L  +  +     V K++E         +G  L V+V+
Sbjct: 318 LQAAP----VQEYPFSNGRTEAELRERLEEIMSGKVTKNAEFQG---RRKDGTVLPVMVS 370

Query: 406 SNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           S P   R G   MF++++                   +  L+ GVA
Sbjct: 371 STPFPDRNGLAVMFKDMSELKQTRDMLGRSE--MLSVLGQLAAGVA 414


>gi|197336844|ref|YP_002158691.1| transcriptional regulator [Vibrio fischeri MJ11]
 gi|197314096|gb|ACH63545.1| transcriptional regulator [Vibrio fischeri MJ11]
          Length = 766

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +       A++ K+ F+  +S+E+R+P+  ++G   +LK +   SL   Q + V  
Sbjct: 225 QDLQQARNEAEAANKSKSRFLASMSHEIRTPMNAVLGLLAILKDT---SLKPNQKELVNT 281

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-V 671
            + SS +LL+++NDILD + ++A    L   T  +++ LN V ++   +     + +  V
Sbjct: 282 ATDSSELLLSIINDILDFSRMEANTFYLENHTFNMHESLNSVLKTFHPQAQNKQLELSLV 341

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF--SVKNNGS 728
           I+D        D  RL QI   ++ N++ F+  G   +++ A    G      SV+++G 
Sbjct: 342 IADNVPVYVQGDAHRLRQILLNLVGNSLKFTDNGQIQILVNAKEHEGRIQLHCSVQDSGI 401

Query: 729 SIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +  + +F+ F    N+      G GLGL+I +  +++  G ++++S     +  + 
Sbjct: 402 GIQPEQLEYLFDEFTMADNSFSRTHEGSGLGLAICQRLVHMMDGTITVNSQYGLGSEFSF 461

Query: 787 RI 788
            I
Sbjct: 462 NI 463


>gi|113969453|ref|YP_733246.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-4]
 gi|113884137|gb|ABI38189.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 935

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/410 (21%), Positives = 161/410 (39%), Gaps = 19/410 (4%)

Query: 390 DTWHLPNGQTLH--VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +  H+ +   L   +  T+ P  G    F+  T   +L    + ++  +   ++     V
Sbjct: 127 EIEHVGDSLILRTPIFATAPPAPGATINFDIQTDNGELLGYISVIINKERALLEQHRAAV 186

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           A F     I L       L+ T     +    I  +    ++         L   +I   
Sbjct: 187 AAF----IIVLIGVQLNLLF-TFRLVKNVTQPITEMVRVVAKIREGKLDARLEGNLIGEL 241

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           D  ++ +      LS+   E           +   +   +    E  L    +   +A  
Sbjct: 242 DLLKRGINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVE--LDLAKKRALEASR 299

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y+  I  S+T LL ++NDI
Sbjct: 300 IKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYINTIERSATNLLAIINDI 356

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           LD + ++AG M L      L + L E    I+       + + V     +  +   D  R
Sbjct: 357 LDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDAMR 416

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFS--VKNNGSSIPEDMCKSVFNRF 742
           + QI + ++ NA+ F+  GS  V L+   + +   +    V + G  I +     +F  F
Sbjct: 417 VCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTGIGIDDSQQDFLFQAF 476

Query: 743 VSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                   RR  G GLGL I +  +N  GG +  +S+ +  +     +P 
Sbjct: 477 GQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNFWFTLPL 526


>gi|325290339|ref|YP_004266520.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965740|gb|ADY56519.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 894

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 135/293 (46%), Gaps = 19/293 (6%)

Query: 504 ITSFDDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           + SF DE+ SL   G+LEL    +L  +   L N+        +    +AE  +    E 
Sbjct: 255 VFSFRDEKFSLVPDGSLEL---RMLAQTFNALSNS----FQEELVKRKKAEETMKAAKEE 307

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A++ K+ F+  +S+E+R+PL  IIG+  LL+ +    L  KQ++YV  +  +S  LL
Sbjct: 308 AETANKAKSEFLAQMSHEIRTPLHTIIGYQYLLENTF---LEEKQTEYVRNLGLASKNLL 364

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++N+ILD + ++A  M L      L  L+ ++   +  ++    ++        +  ++
Sbjct: 365 EIINEILDFSKLEAKKMVLEAVDFDLYLLIEDLCSMLEVEIRRKKLQFNFTIKPDVPRYL 424

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCK 736
             D  RL Q+   +LSN + F+ +GS  + ++            F V + G  IP+   +
Sbjct: 425 KGDTTRLKQVILNLLSNGIKFTHEGSLQLFVELKEQKNRTVMLCFHVADTGIGIPQRQIE 484

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +F  F        R   G GLGL+I +  + L GG + + S     +T +  
Sbjct: 485 QLFEVFTQGDTSTSRKYGGSGLGLAISKKIVRLMGGDIFLKSVVGEGSTFSFT 537


>gi|301307858|ref|ZP_07213814.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300834201|gb|EFK64815.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 767

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 127/248 (51%), Gaps = 6/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N T   +  + L E  E    +D +K++F+ ++S+E+R+PL  I+GF++L+ T       
Sbjct: 525 NNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVT---CDDP 581

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y+  I +++ +LL L+NDILDL+ +++GI++       L  + NE+  +I  KM 
Sbjct: 582 EEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMT 641

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             N+ +++         + DR RL Q++   L+NA+  +  G  + +    +       V
Sbjct: 642 NPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSG-YIKMGYGIERKGLRIYV 700

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++ G  IP+D+   VF RF       Q  G GLGL+I  + +   GG V  +S     +T
Sbjct: 701 EDTGIGIPDDLHDKVFTRFEKLNEFSQ--GTGLGLTISRAIVEAAGGEVGFTSKLGVGST 758

Query: 784 INCRIPSK 791
               +P +
Sbjct: 759 FWAWLPLR 766



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 106/289 (36%), Gaps = 25/289 (8%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN-------- 352
           + +Q   T  I   L V I I+D +  L+  N   + ++ +D      N  N        
Sbjct: 24  IEEQRLFTESIYACLPVGIEIYDAHGVLRSINDHALRMYGVDDRTSVVNIVNLYKSPFVD 83

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            ELL  ++S   +  +  +   + N  + Y S       + +   + + +        G 
Sbjct: 84  SELLARIQSGEDISLEFEYDFDRVNKDAYYSSYNKDTMIYGV---KVIPIWSRKKHLIGH 140

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I +  ++T   ++E +     K     +   +    V+  + ++   NP +      +  
Sbjct: 141 ILLANDMTSVKEVEFRTEESKKNLEMAMKAANMASWVYDVNKKV--FNPLYGLTVAKKNM 198

Query: 473 RLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYS 529
            +     I +    A   R +++  G ++    +T  F +E    Q  +    +S +  S
Sbjct: 199 PMEAVLDILHPQDRAPLIRLFSQLIGNEIEQGQMTLRFYNE----QEEMYRYYESRMRLS 254

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                  Q + T +++T+  R + A   ++   ++   +K   V ++ +
Sbjct: 255 TEHRGKLQIIGTQMDITE--RLQMAKKAQDLIAKRDLAMK---VSNIVH 298


>gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1444

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 911  QKLSELKIKFFTNISHELRTPLTLIQGPIQELREKE--KLSQKGMQYVDLMEKNTKQMLQ 968

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 969  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1028

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G  + +    + D+      V+++G  IP+     +F 
Sbjct: 1029 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEIFE 1088

Query: 741  RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF    +      +G G+GL++ +  I+LH G +   S +         +
Sbjct: 1089 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1138


>gi|260775446|ref|ZP_05884343.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608627|gb|EEX34792.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1128

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 130/289 (44%), Gaps = 12/289 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ +         + +L      +     + + ++N+ L
Sbjct: 403 INTERKDEIGRLAISFERMQRSIRD---------KILLIKQQNEELESNLKLIQKQNDEL 453

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+++K+ F+   S+ELR+PL  ++G  + L +   G + +     ++ I +S   L  
Sbjct: 454 QLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPITADHKYQLDIIISSGQRLAT 513

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LD   +  G + +    + ++     V +     +    IRI            A
Sbjct: 514 LVDDLLDYHKMRYGNLDIETRAVDISGATRLVLELSTHLVGNKPIRIINQVPNDPLWVCA 573

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+   ++ NA+ ++S+G  +++ A + + +    V + G  IP +  + +F   
Sbjct: 574 DPQRLEQVLYNLVGNAIKYTSEG-KIVISATQVDDNIRVQVVDTGQGIPAEQLEHIFEPL 632

Query: 743 VSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +         R+G GLGLSI    I+L  G + +SS     TT +  +P
Sbjct: 633 IQAGSDSSRYRQGAGLGLSISRQLIDLMQGTLYVSSQPMVGTTFSFTLP 681


>gi|228914596|ref|ZP_04078205.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228933304|ref|ZP_04096160.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826465|gb|EEM72242.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228844915|gb|EEM89957.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 444

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 206 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++
Sbjct: 325 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDD 382

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 383 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 440

Query: 787 RIPS 790
           ++P 
Sbjct: 441 KLPL 444


>gi|225026156|ref|ZP_03715348.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353]
 gi|224956516|gb|EEG37725.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353]
          Length = 958

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 166/403 (41%), Gaps = 31/403 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEE 471
           +    ++T    +E+  +  +      ++ L + +  +        L N  +       +
Sbjct: 277 MIFLRDITE-TKVESARHLQMAADNAYMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQ 335

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-------LSDS 524
               P     +        Y   +  +    +I   D+ RK L+   ++       L + 
Sbjct: 336 MIYKPLGFYHDFQMQVLEKYKTLEPLEAIDILIAP-DNIRKKLKSENDIYKFEYCSLDEK 394

Query: 525 VLEY-SIIPLPN-----AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQ 574
             +  S IPL        + +L  ++VT   +AE    +AL E   +   A+  K  F+ 
Sbjct: 395 TYKIASYIPLEWKNGKLEKVLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLS 454

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+++R+P+  I+G T +           +  + +  I+ SS  LL L+N++LD+A ++
Sbjct: 455 NMSHDIRTPMNAIVGLTAI--AGANVESQDRVIECLGKITESSRHLLGLINEVLDMACIE 512

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSK 693
           +G M L      L++L++ +       + E+     +  +  +      D  R+ Q+F  
Sbjct: 513 SGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEDVCGDSLRIQQVFVN 572

Query: 694 ILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           ++SNA+ ++  G  +I             G + F++++NG  +  +  K +F+ F     
Sbjct: 573 LMSNAIKYTPDGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADD 632

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R  G GLG++I  + +NL  G + + S+    T I   I
Sbjct: 633 HRTTRVQGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 675


>gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1467

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ +  ++  +L 
Sbjct: 934  QKLSELKIKFFTNISHELRTPLTLIQGPIQELREKE--KLSQKGMQYVDLMEKNTKQMLQ 991

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   LN++++  ++       EN +       G+     A
Sbjct: 992  LVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDIMVWA 1051

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++++  +   I+SNA  F+  G  + +    + D+      V+++G  IP+     +F 
Sbjct: 1052 DKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLSEIFE 1111

Query: 741  RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF    +      +G G+GL++ +  I+LH G +   S +         +
Sbjct: 1112 RFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIEL 1161


>gi|149190210|ref|ZP_01868485.1| sensor protein LuxQ [Vibrio shilonii AK1]
 gi|148835957|gb|EDL52919.1| sensor protein LuxQ [Vibrio shilonii AK1]
          Length = 864

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 162/398 (40%), Gaps = 35/398 (8%)

Query: 410 GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G +I  F ++   +     + +   K+  +  +     + V+     I   NPA +   +
Sbjct: 332 GSSIHEFNHIGNTLSNTFERLSEQEKLFQDLFNFSLSPIIVWTEKATILQINPAAKKSLE 391

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF---DDERKSLQGTLELLSDSV 525
             E                    + S+ + LF   +T          +L G    + + V
Sbjct: 392 LFEELNQ----------------SNSESFVLFVNEMTPLVMKASMGATLTGIDVPIGEKV 435

Query: 526 LEYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +S+  +         +    ++T  V AE+   +  +    + + +  F+  +S+E+R
Sbjct: 436 FRWSLSAIQTRDDSTLVLSQGQDITKLVEAEKQSIKARKEAEWSAKARTDFLAKMSHEIR 495

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+G + LLK    G  + K  + +E +  S   LL ++NDILD + ++ G  KL 
Sbjct: 496 TPLNGILGISQLLKQ---GGDDGKYQEQIEVLCNSGEHLLAVLNDILDFSKIENGSFKLE 552

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMD 700
                  +++  ++          NI + + +   +  +   D+ RL QI   ++SNA+ 
Sbjct: 553 KHNFKFKEVITAIEGIYKPLCDHKNIELVIQNGLNENTALNTDQVRLNQILFNLVSNAIK 612

Query: 701 FSSKGST-VILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
           F+ KG   V       +          V++ G  I  +  + VF+ FV +      +  G
Sbjct: 613 FTHKGHVKVSFALKTTDSTKTNWLTIQVEDTGIGILSNQIQQVFDPFVQSEATLTREYGG 672

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+IV++ + +  G +++SS     T    R+P +
Sbjct: 673 SGLGLAIVKNLVTIFDGQINVSSEVGRGTRFEVRLPVE 710


>gi|118591464|ref|ZP_01548861.1| two-component sensor/response regulator hybrid [Stappia aggregata
           IAM 12614]
 gi|118435792|gb|EAV42436.1| two-component sensor/response regulator hybrid [Stappia aggregata
           IAM 12614]
          Length = 808

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 155/382 (40%), Gaps = 31/382 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +     +  L + V     DG I   N A   ++           H     AT 
Sbjct: 158 ELGESDERHASILATLGDVVVRRDQDGIITYVNSAADDVFGL--------GHALQPGATL 209

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-----SVLEYSIIPLPNAQT---- 538
                E  G   F + +T   D+     G  +L  D            IP+ +  T    
Sbjct: 210 HLPLLEEVG---FESAVTQALDKTTPGMGFQDLHIDTAQGPRWFSRIDIPVRDTTTDRQL 266

Query: 539 -MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                 +VT+    E  L     +   ++E K+ F+  VS+E+R+PL  ++G   LL+ +
Sbjct: 267 VQTVLRDVTERRLIEEELLAARHSAESSNEAKSRFLATVSHEIRTPLNGVLGMAALLRDT 326

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L  +QS Y+E +  S   LL L++++LD + V+AG + +  + + +  L+  V + 
Sbjct: 327 R---LTKEQSAYIEALETSGETLLLLIDEVLDFSKVEAGKLDIQAAPVRVGALVESVVEL 383

Query: 658 IATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
           +A K H  ++ I  + D  L   V  D  R+ QI   ++ N + F+ +G   V L    +
Sbjct: 384 LAPKAHAKSLEIGSMLDPNLPEEVTLDATRVRQILYNLIGNGIKFTDEGGVAVELTGRSN 443

Query: 716 ---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
               G     V+++G    E   + +F  F    H    +  G GLGL+I +    L GG
Sbjct: 444 PDGGGFLDIDVRDSGIGFDEQEAERLFQEFEQVDHGPARKFGGTGLGLAIAQRLAGLMGG 503

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            ++   + +G       +P  E
Sbjct: 504 EIAAQPAGDGGAQFRVSLPIPE 525


>gi|116073625|ref|ZP_01470887.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. RS9916]
 gi|116068930|gb|EAU74682.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. RS9916]
          Length = 683

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  R L++ E  +L     +  +   
Sbjct: 282 EELTAAQVKQASLIATMADGAVLLDAQGQIVLANPTARRLFRWEGRKLEGQDFLGELPEL 341

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            S      +      A++ +  D  +      E        +  +   + +++       
Sbjct: 342 LS-----VELHSTLDAVLCNSADSNELRSSAGEPPRTLRFVFQAVRDASGESLKGIAVTI 396

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L          +Q
Sbjct: 397 QDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDLGDQLSADEQ 446

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++   +  +  L  LVND+LDL+ +++G + + +  + L   + +  ++      +  
Sbjct: 447 KEFLGVANDETDRLTRLVNDVLDLSRLESGRV-VQFEPVSLRPAMEQTLRTYRLNAEDRQ 505

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------- 717
           + +++     L   + +   +LQ+   ++ NA+ FS  G  ++L+A              
Sbjct: 506 VDLRLEVAPDLPEVLGNWDLILQVLDNLVGNALKFSRPGGPLMLRAYAWPDSCEVKDQAI 565

Query: 718 ---------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIV 761
                               + + G  I E   + +F+RF    +      G GLGLSIV
Sbjct: 566 VGSEGPTCALTSPLPKLRIEIADTGCGISEADQQRIFDRFYRVENAVHTEVGTGLGLSIV 625

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
              I  HG  V + S  +  TT    +P 
Sbjct: 626 RGIIEKHGSQVFMVSEPDVGTTFWFDLPL 654



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 53/185 (28%), Gaps = 17/185 (9%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
                 +F   +     G     +++   N+      A D +    +         ++  
Sbjct: 240 RRIARGDFQTRIGLPVGGE--LGELLDGFNAMASQLQAYDAANIEELTAAQVKQASLIAT 297

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +     + D    +   N +   L+  +   L          +FL    +L       T 
Sbjct: 298 MADGAVLLDAQGQIVLANPTARRLFRWEGRKLEGQ-------DFLGELPELLSVELHSTL 350

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETK 428
              + +   S+E        P  +TL  +  +          G     ++LT +V+L   
Sbjct: 351 DAVLCNSADSNELRSSAGEPP--RTLRFVFQAVRDASGESLKGIAVTIQDLTREVELNAA 408

Query: 429 YNTLV 433
            +  +
Sbjct: 409 QSRFI 413


>gi|325263735|ref|ZP_08130468.1| putative non-motile and phage-resistance protein [Clostridium sp.
           D5]
 gi|324030773|gb|EGB92055.1| putative non-motile and phage-resistance protein [Clostridium sp.
           D5]
          Length = 651

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    E L +A++ K++F+ ++S+ELR+PL +IIGF  +L     G LN KQ QY+  
Sbjct: 396 QYLIHTIEELEEANKCKSAFLANMSHELRTPLNSIIGFASILHDELFGELNEKQKQYIFV 455

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL L++DIL    +D  +  ++   + +ND++  V  S+   +   + ++ + 
Sbjct: 456 ILDSGNHLLALIDDILHFVKLDRHVETISLKEVNVNDIIENVSMSVMPLVQSKDQKLVID 515

Query: 673 SDGKLGSFVA--DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSS 729
              +     A  D Q++ Q+   +LSNA+ F+ +   + ++    N    F SV +NG  
Sbjct: 516 IKPEDTGLTAMWDAQKIRQLLLNMLSNAIKFTPENKEIRIQFRPANEAAYFISVIDNGIG 575

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++  K VF+ F           +GVGLGL+I    + +H G + +  +  G   ++  
Sbjct: 576 IEDEFKKKVFHPFEQVNSSFTRNYQGVGLGLAICRELVEMHQGRIWLEDNPSGGLIVHVV 635

Query: 788 IPSK 791
           +P +
Sbjct: 636 LPVR 639


>gi|161520791|ref|YP_001584218.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189353027|ref|YP_001948654.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160344841|gb|ABX17926.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189337049|dbj|BAG46118.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 654

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 148/366 (40%), Gaps = 13/366 (3%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +D   + +       RI   N A + ++  +   +         A    R     
Sbjct: 137 LLRRVVDASPDAIVGVDGARRIVSWNRAAQRIFGADAATMIGRDVTTLFAPRWLRRQPVP 196

Query: 495 DGWDLFAAIITSFDD--ERKSLQGTLELLSDSVL-----EYSIIPLPNAQTMLTFVNVTD 547
              D   A +   D    R+         + S +         + +   +      +   
Sbjct: 197 ASIDEVHAPLGPIDVLCMRQDAHCFRATFAASPIVDANGHVDGLSMTLREARERRRDERR 256

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R+ R   +       ++ +K+  +  VS+ELR+PL  I G+ ++L++           
Sbjct: 257 DHRSLRGARDARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSVDGQGF---AQ 313

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q V+ I  S+  L  +V D+LD +++  G ++L  + + +  ++++  +      H   I
Sbjct: 314 QAVDAIDRSARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGI 373

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +     G      AD +RL Q+ S +LSNA+ F+  G  +++  AR +     SV + G
Sbjct: 374 TLVTEGAGTACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVRLSVADTG 433

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTI 784
             +  +   ++F+ F    NA    +RG+GLGLSIV +   LHGG V  +S       T+
Sbjct: 434 QGMAPEALPNLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTV 493

Query: 785 NCRIPS 790
              +P+
Sbjct: 494 TVMLPA 499


>gi|1136289|gb|AAC47300.1| histidine kinase A [Dictyostelium discoideum]
          Length = 2150

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 143/304 (47%), Gaps = 21/304 (6%)

Query: 502  AIITSFDDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
            AI+      RK   G L ++    V+        N+  M   +    S +  + L  + E
Sbjct: 1319 AIMEIECRMRKKYGGYLYIIMRGKVVSNETSFKDNSLRMAGTLRDMTSRKDMQRLILEKE 1378

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            A  +A++ K++FV  VS+E+R+PL+ +IG +DLL  +   +L+ +Q  YV+ I  SS  L
Sbjct: 1379 AAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLET---NLSEEQRDYVQTIQKSSQAL 1435

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            L ++NDILD + +++  +K+      + +    V   ++   ++ ++ I +     +   
Sbjct: 1436 LTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLSVAAND-DVDILLRVPPNVPRI 1494

Query: 681  V-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----------DFIFSVKNNGS 728
            +  D  R+ Q+    LSNA+ F+S+G  +    + D+                ++++ G 
Sbjct: 1495 IFGDAMRMRQVLLNRLSNAIKFTSRGHVLT-DISVDDSIPPTNTEEEIIHLCITIEDTGI 1553

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI-NLHGGHVSISSSDEGVTTIN 785
             IP+ +  S+F  F    +   R   G GLGLSI +  I  + GG + +SS     +   
Sbjct: 1554 GIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSITKRLIEEVMGGTIQVSSIVGQGSKFK 1613

Query: 786  CRIP 789
            C IP
Sbjct: 1614 CIIP 1617


>gi|16329398|ref|NP_440126.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1651879|dbj|BAA16806.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 834

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/280 (29%), Positives = 131/280 (46%), Gaps = 21/280 (7%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y    L  AQ     +   +S++ +  L    E      + K++FV ++S+ELRSPL  I
Sbjct: 324 YQQRELERAQREKILIEYNESLQKQVDLVRAKEIAESEAKAKSTFVANMSHELRSPLNAI 383

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IGF+ L+  +K  +L  +Q +    I  S   LLNL+N+ILD + ++AG   LN     L
Sbjct: 384 IGFSQLMLRTK--NLPMEQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFDL 441

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL++++  +  K     I +  I D  L      D  +L QI   +LSNA+ F+++G 
Sbjct: 442 YLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGE 501

Query: 707 TVILKAAR--DNGDFI---------------FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            V+    R  +  + I               F++K+ G  I E     +F  F       
Sbjct: 502 VVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGR 561

Query: 750 Q-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + G GLGL+I   FI L GG +++SS  +  TT +  I
Sbjct: 562 NAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFSI 601


>gi|288918897|ref|ZP_06413241.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
 gi|288349749|gb|EFC83982.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f]
          Length = 1412

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 139/297 (46%), Gaps = 20/297 (6%)

Query: 512  KSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            +S + T EL S SV L+ +   L     +L   N  +   A   L EK E L  + + K+
Sbjct: 833  QSQRLTQELRSQSVELQRTNNELEEKAALLEEKNT-EIDMARIGLEEKAEQLALSSQYKS 891

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+ ++S+ELR+PL +++    LL  +   +L+ KQ  + E I ++ + LL L+NDILDL
Sbjct: 892  EFLANMSHELRTPLNSLLILAKLLADNPDHNLSQKQIDFAETIHSAGSELLGLINDILDL 951

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
            + V+AG M ++   +    L + V         E  +  ++     +   FV D QR+ Q
Sbjct: 952  SKVEAGKMNVDAGPVRTAALCDAVAGVFGPTAEEKGLTFEISVTSDVPEEFVTDEQRIQQ 1011

Query: 690  IFSKILSNAMDFSSKGSTVILKAARDNGD--------------FIFSVKNNGSSIPEDMC 735
            +   +LSNA+ F+  G TV L  +  + D                F+V + G  +  +  
Sbjct: 1012 VLKNLLSNAVKFTDSG-TVRLDVSVASPDTPFVAPSLRSAPMVLSFAVSDTGIGVAAEKL 1070

Query: 736  KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F  F         +  G GLGLSI +    L GG +++SS     +T    +PS
Sbjct: 1071 RMIFEAFQQADGTTSRRYGGTGLGLSISKEIARLLGGSIAVSSQIGQGSTFTLFVPS 1127


>gi|114320953|ref|YP_742636.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227347|gb|ABI57146.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 456

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 2/234 (0%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L + +++KN F+   +++LR+PL  + G+ DLL+   LG LN  Q + +  ++  +  
Sbjct: 212 ERLMELNDLKNRFLGVAAHDLRNPLGVLNGYIDLLRQEALGPLNEAQQEVMGVMADVAER 271

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV D+LD++ +++G ++L    + LN  L     +        +IRI +     L +
Sbjct: 272 MSALVEDLLDVSAIESGQLELEREPLDLNRFLQGQAHAQGLIAQGKSIRIVLDIPEPLPT 331

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D +RL Q+   +++NA+ FS + ST+ L    D+     SV + G  IP +    +F
Sbjct: 332 VAVDSRRLGQVLDNLIANAVKFSPRDSTITLGGRADDQSVRISVSDQGPGIPAEERAQLF 391

Query: 740 NRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             F   ++      +  GLGLSIV+  +  HGG V++ ++  G       +P +
Sbjct: 392 QPFRRGSNAPTADEKSTGLGLSIVQKLVQAHGGQVAVDAAPGGGARFTVTLPRQ 445


>gi|150016956|ref|YP_001309210.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903421|gb|ABR34254.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 644

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 124/283 (43%), Gaps = 8/283 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+  +E+ S   L      + +   +    N  +++ AE       E   + +++K  F+
Sbjct: 333 LKSCMEIASKGDLTIRCN-IDSKDEIGVLANSFNNMLAEN--KRLLEETVQYEKLKTEFI 389

Query: 574 QHVSYELRSPLTNIIGFTDL---LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            ++S+ELR+PL  I     L   L          K   Y   I  +   L+ LVN+++D+
Sbjct: 390 ANMSHELRTPLNIIFSTAQLFNVLINRDENLNTEKMKNYTNSIKQNCYRLVRLVNNLIDI 449

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
             +D+G MKL      +  ++ ++ QS A  +   +  I   +D +      D ++L +I
Sbjct: 450 TKIDSGYMKLELKNGNIVQVVEDITQSTAEYVEYMSRTIIFDTDNEEKIMAFDEEKLERI 509

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
              ++SNA  F+  G  + +     +   + SVK+ G  IPE+    +F RF        
Sbjct: 510 LLNLISNATKFTEPGDKISVDLYDMDDHIVISVKDTGRGIPEEKVSQLFQRFKQVERLLN 569

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               G G+GLSIV++ + +H G + + S     T     +P K
Sbjct: 570 RSHEGSGIGLSIVKALVEMHEGTIEVKSIYGEGTEFIICLPVK 612


>gi|288941472|ref|YP_003443712.1| histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896844|gb|ADC62680.1| histidine kinase [Allochromatium vinosum DSM 180]
          Length = 547

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 126/300 (42%), Gaps = 26/300 (8%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R  +   +  L+   +++   P    +            R E  L         A+  K+
Sbjct: 87  RADVDSKVRALAAGAVDFINKPFDLIELSARLQTQVRLARTEAELARARHEAESANRAKS 146

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+PL  IIG  +LL  ++   L++ Q +YV  I  S   +L+L+ DILD 
Sbjct: 147 EFLANMSHEIRTPLNAIIGIGELLAKTR---LDATQREYVHIIETSGNAMLSLIEDILDY 203

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + ++AG ++L+         + E    +  K  E  +RI V  D  +   F+ D  R  Q
Sbjct: 204 SKIEAGRLELDAVRFAPAVCIREAVGLVQLKAREKGLRIDVAVDPGIPGYFLGDSHRFRQ 263

Query: 690 IFSKILSNAMDFSSKG---------STVILKAARDNG---------DFIFSVKNNGSSIP 731
           I   +L NA+ F+ +G         S V   A +D             + +V++ G  IP
Sbjct: 264 IAINLLGNAVKFTEQGRIGVSLNGHSIVPEDAGQDRTMSQSDEAWYQLVLTVEDTGIGIP 323

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS--DEGVTTINCR 787
            D    +F +F        RR  G GLGL+I      L GG + + S+      +   C 
Sbjct: 324 PDRQSHIFAKFSQVDASTTRRYGGTGLGLAICRQLARLLGGDIEVESAGIPGQGSRFRCT 383


>gi|158338793|ref|YP_001519970.1| two-component sensor histidine kinase [Acaryochloris marina
            MBIC11017]
 gi|158309034|gb|ABW30651.1| two-component sensor histidine kinase [Acaryochloris marina
            MBIC11017]
          Length = 1318

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 116/284 (40%), Gaps = 25/284 (8%)

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            LE +   L   + +            E  R L E  +A  +A + K+ F+ ++S+E+++P
Sbjct: 742  LETTQSLLMQGEKIAINQAYLLKQERENNRLLKEARKAAEEAVQAKSEFLANMSHEIKTP 801

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            +   +G   LL  ++   L S+Q  +VE I      L+ ++NDILD + ++AG + L   
Sbjct: 802  MNGALGMAGLLLDTE---LQSEQRNFVETIQNCGDSLMVIINDILDFSKIEAGKLDLEEC 858

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFS 702
            +  L   + E    +A K  +  + +  +    +      D  RL QI   ++ NA+ F+
Sbjct: 859  SFNLRTCIEEALDLLAVKAAQKQLELNYLWHADITEQVEGDPTRLRQILVNLIGNAIKFT 918

Query: 703  SKGSTVI-----------------LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + G   +                 +     + +   +V + G  IP D    +F+ F   
Sbjct: 919  NVGEVTVAVGAREIQHVCALDPQKIAEEVQHFEVEIAVNDTGIGIPPDNMSRLFDSFSQV 978

Query: 746  AHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  Q  G GL L+I +    L GG + + S     ++    
Sbjct: 979  DSSITRQYGGTGLALTISKHLCELMGGRMWVRSEVGKGSSFAFT 1022


>gi|71907073|ref|YP_284660.1| PAS [Dechloromonas aromatica RCB]
 gi|71846694|gb|AAZ46190.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 794

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 151/387 (39%), Gaps = 31/387 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     ++    I+H    V     D R    N  F             G     ++   
Sbjct: 248 ELKKQKELLQSVIEHTPLRVFWKDKDCRYLGCNSLFALDAGLTSPDELIGKSDFELSWRE 307

Query: 488 SRYYNESDGWDLFAAII--TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                 +D   +  + +    F++ + +  G    LS S +            +  + ++
Sbjct: 308 QAELYRADDQAVMVSGVPKIDFEEPQTTPDGHTIWLSTSKVPLHTGDDEVIGVLGIYTDI 367

Query: 546 TDSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTNI 587
           T+     + L +    L +                  A+  K++F+ ++S+E+R+PL  I
Sbjct: 368 TERKNTAQELAKHRLHLEQLVEERTEELLLAKDAAENANMAKSAFLANMSHEIRTPLNAI 427

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G    ++    G L+ KQS+ +E +  +ST LLN++N IL+L+ ++AG  ++  S I +
Sbjct: 428 AGMAHFIRR---GGLSPKQSEQLEKLEGASTHLLNIINAILELSKIEAGKFEIEESPIKV 484

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             +L  V   +  +    +I++    +      + D  RL Q      +NA+ F+  GS 
Sbjct: 485 ESILGNVLSLLHDRAEAKHIKLLCEIELLPKDLLGDATRLQQALLNYTTNAVKFTETGS- 543

Query: 708 VILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
           V L+    + +       F V++ G  I  ++   +F+ F    +   R   G GLGL+I
Sbjct: 544 VTLRVHPVDENAISTVLRFEVRDTGIGIAPEVLPKLFSAFEQADNSTTRKYGGTGLGLAI 603

Query: 761 VESFINLHGGHVSISSSDEGVTTINCR 787
            +    + GG     S+    +T    
Sbjct: 604 TKKLAEMMGGDSGAESTLGRGSTFWFT 630



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 51/163 (31%), Gaps = 17/163 (10%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHI----SVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
             ++ + ++L E   + +  ++ +     + + + +     V+ +D+    L  N  +  
Sbjct: 226 RGINSMTAKLGELLRQHRGNADELKKQKELLQSVIEHTPLRVFWKDKDCRYLGCNSLFAL 285

Query: 225 NTETEGIVFQ------KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           +               +     +        + ++ S   + +F E   T   G+     
Sbjct: 286 DAGLTSPDELIGKSDFELSWREQAELYRADDQAVMVSGVPKIDFEEP-QTTPDGHTIWLS 344

Query: 279 IVRVLNS------FGEAGIAIDVSKEITVNDQLTHTYEILHNL 315
             +V          G  GI  D+++      +L      L  L
Sbjct: 345 TSKVPLHTGDDEVIGVLGIYTDITERKNTAQELAKHRLHLEQL 387


>gi|310796709|gb|EFQ32170.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 2508

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/275 (26%), Positives = 126/275 (45%), Gaps = 18/275 (6%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             S++ L            T +  AE       +   +A + K+ F+ +VS+ELR+PL  +
Sbjct: 1912 VSMVALQKRALAKALEAETKAKHAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGV 1971

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            IG ++LLK S+   L+  Q +  + I  S+ +LL ++NDILD + ++A  MKL       
Sbjct: 1972 IGNSELLKDSE---LDKDQQEMADNIKVSAELLLTVINDILDFSRMEADKMKLYVIAFNP 2028

Query: 648  NDLLNEVKQSI----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +++ EV +++      K  + N++I    +        D  RL Q+   ++SN++ F+ 
Sbjct: 2029 EEMVREVVRAVSYSNRQKTKQKNVKIIQDINLPSMLIFGDPIRLHQVLGNLISNSLKFTE 2088

Query: 704  KGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
             GS + + A       D    +F V++ G  IP+     +F  F         +  G GL
Sbjct: 2089 DGS-ITIGARVESETNDKATLLFRVQDTGIGIPQQQLVKLFQPFSQADTSTARKYGGSGL 2147

Query: 757  GLSIVESFIN-LHGGHVSISSSDEGVTT--INCRI 788
            GLSI +S I  +  G + + S +   TT       
Sbjct: 2148 GLSICKSLIETMMKGKIQLDSQEGVGTTAWFKVTF 2182


>gi|288940234|ref|YP_003442474.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895606|gb|ADC61442.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1062

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 133/739 (17%), Positives = 242/739 (32%), Gaps = 93/739 (12%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVS-----------GSCAFLRILSLDG 173
             LS A E        F     +    A++++ R++           G C    ++    
Sbjct: 35  AALSGALEGTHLRLHPFPARCGSPPVTAVELDRRIASVPSHEPLIWIGGCCLAPLMREHK 94

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD--QAGDIL----WANISYKKNTE 227
               +A  T     L          F  L    W  +    G  L    W   ++ ++  
Sbjct: 95  RDRNIARKTKSADALG--FHRLDQCFHLLTDPAWIDEWLAEGAYLCTPGWL-AAWPRHLA 151

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNF-------------CETVSTLEHGNN 274
             G+  +      R LF E  +  ++  +  +                      +  G  
Sbjct: 152 RLGLADRDLA---RTLFGESTRHLLLLDTGHDPRAAEHLAALAEHLALPARRERVGLGYL 208

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT---YEILHNLTVAIAIFDQNR----- 326
           +   I     +   A   ++ S+      QL  T    +++  L+VA    D  R     
Sbjct: 209 RLSLIQLAAQASHRAEHRLNTSRLAAARQQLAETAMAMDLVGRLSVA----DGERGVIGQ 264

Query: 327 YLQFHNRSFV--ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
            L+     F   + + +  A L  N    E L    +     E  ++   +  I +    
Sbjct: 265 ILEIFTALFAPTQCFYLPCAELRAN--RPETLGDTPTPESFAEARDFALERGTIRATASG 322

Query: 385 S--------ETHKDTWHLPNG--QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
                    ET      L +G   T H+    N       +      +       +    
Sbjct: 323 HGFLLRLQHETETLGVFLIDGLAMTRHLRKYQNLALQMAGLCAMAVQRAQSIQLLSQSET 382

Query: 435 VQGETIDHLSEGVA----VFGPDG-----RIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
                 + +SEG A    +    G     R    N AF +L   +   L  G  +R    
Sbjct: 383 RYRSLFESMSEGFALHEIILDDRGHPIDYRFLDVNRAFETLTGLKRADL-IGRRVREAIP 441

Query: 486 TCSRYYNESDGWDLFAAIITSFD--DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               ++ +  G       +  F+  D        +   S  V  +++I     +      
Sbjct: 442 GIEGHWIKRYGEVALHGQVMRFEQFDNVLGRHFQVHAYSPRVGTFAVIFSDVTEQRQAEH 501

Query: 544 NVTDSVRAER--------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            + +               L    +   +A++ K+ F+ ++S+E+R+P+  IIG T LL 
Sbjct: 502 ELFEYREHLETLVASRTAELALAKQEAERANQAKSLFLANMSHEIRTPMNAIIGLTHLLG 561

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                     Q   +  I  ++  LL+++NDILD++ ++AG ++L  S      LL++V 
Sbjct: 562 REISVPA---QRDRLLKIDGAAKHLLSVINDILDISKIEAGKLELQTSDFSPRVLLDQVS 618

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
             IA ++    +  +V +         D  RL Q     L NA+ F+ +G  + L+A   
Sbjct: 619 ALIAEQVQSKGLDYRVDAGPLPVVLHGDATRLRQALLNYLGNALKFTERG-RIQLQARLL 677

Query: 714 ---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
               ++    F V + G  IPE+M   +F  F         +  G GLGL+I      L 
Sbjct: 678 EDGNEDALISFEVIDTGIGIPEEMQGRLFTLFEQGDGSPIRRYGGTGLGLAITRRIAELM 737

Query: 769 GGHVSISSSDEGVTTINCR 787
           GG   + S     +     
Sbjct: 738 GGSAGVESVPGQGSRFWFT 756


>gi|262382720|ref|ZP_06075857.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295598|gb|EEY83529.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 767

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 127/248 (51%), Gaps = 6/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N T   +  + L E  E    +D +K++F+ ++S+E+R+PL  I+GF++L+ T       
Sbjct: 525 NNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVT---CDDP 581

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y+  I +++ +LL L+NDILDL+ +++GI++       L  + NE+  +I  KM 
Sbjct: 582 EEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMT 641

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             N+ +++         + DR RL Q++   L+NA+  +  G  + +    +       V
Sbjct: 642 NPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSG-YIKMGYGIEREGLRIYV 700

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++ G  IP+D+   VF RF       Q  G GLGL+I  + +   GG V  +S     +T
Sbjct: 701 EDTGIGIPDDLHDKVFTRFEKLNEFSQ--GTGLGLTISRAIVEAAGGEVGFTSKLGVGST 758

Query: 784 INCRIPSK 791
               +P +
Sbjct: 759 FWAWLPLR 766



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 106/289 (36%), Gaps = 25/289 (8%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN-------- 352
           + +Q   T  I   L V I I+D +  L+  N   + ++ +D      N  N        
Sbjct: 24  IEEQRLFTESIYACLPVGIEIYDAHGVLRSINDHALRMYGVDDRTSVVNIVNLYKSPFVD 83

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            ELL  ++S   +  +  +   + N  + Y S   H     +   + + +        G 
Sbjct: 84  SELLARIQSGEDISLEFEYDFDRVNKDAYYSS---HNKDTMIYGVKVIPIWSRKKHLIGH 140

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I +  ++T   ++E +     K     +   +    V+  + ++   NP +      +  
Sbjct: 141 ILLANDMTSVKEVEFRTEESKKNLEMAMKAANMASWVYDVNKKV--FNPLYGLTVAKKNM 198

Query: 473 RLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYS 529
            +     I +    A   R +++  G ++    +T  F +E    Q  +    +S +  S
Sbjct: 199 PMEAVLDILHPQDRAPLIRLFSQLIGNEIEQGQMTLRFYNE----QEEMYRYYESRMRLS 254

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                  Q + T +++T+  R + A   ++   ++   +K   V ++ +
Sbjct: 255 TEHRGKLQIIGTQMDITE--RLQMAKKAQDLIAKRDLAMK---VSNIVH 298


>gi|94265547|ref|ZP_01289294.1| PAS [delta proteobacterium MLMS-1]
 gi|93453947|gb|EAT04297.1| PAS [delta proteobacterium MLMS-1]
          Length = 825

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 158/407 (38%), Gaps = 43/407 (10%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           V++ L +      +     +     G+  +     +   +  + ++      +    T I
Sbjct: 129 VRMQLASGLRESRQRLELALAGADLGLWEWHLATDLFTLDGQWDTILGYHPAQPLTATEI 188

Query: 481 RN--IAATCSRYYNESDGWDLFAAIITSFDDER---KSLQGTLELLSDSVLEYS--IIPL 533
           R   I          +    L  A  T   + R   ++      L    V+E++    PL
Sbjct: 189 RQQLIHPADLPRLQNAIKRHLAGATPTMEAEYRWHHRTGHWVWVLDRGRVVEWADDGTPL 248

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI---------------------KNSF 572
             A    + +N+     AE  L   +  L  A+                       K+ F
Sbjct: 249 KMAG---SNLNINQRKAAEEVLRRSHRQLAAANRRQAAASAEASRQAAAAAAANRAKSEF 305

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  IIG ++LL  +   +L+ +  +Y   I  S   LL ++NDILD + 
Sbjct: 306 LANMSHEIRTPLNGIIGLSELLAAAP-ENLDPEHRRYAGLIHDSGQALLTIINDILDFSK 364

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIF 691
           ++AG ++L      L+D +    +         +I +K+    +L    + D QRL Q+ 
Sbjct: 365 IEAGHLELAERQFNLHDAVTTTLELAKATTGARDIPLKLEYSPELPGELLGDPQRLRQVL 424

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFI--------FSVKNNGSSIPEDMCKSVFNRFV 743
             +LSNA+ F+  G  V+  AA D             F+VK+ G  I  +  + +F  F 
Sbjct: 425 LNLLSNALKFTESGEIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLEQIFEAFN 484

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  R   G GLGL+IV   +   GG + + S     ++    I
Sbjct: 485 QADTSSTRHQAGTGLGLAIVRRLVTAMGGTIEVESEPGQGSSFQVII 531


>gi|91775022|ref|YP_544778.1| GAF sensor hybrid histidine kinase [Methylobacillus flagellatus KT]
 gi|91709009|gb|ABE48937.1| GAF sensor hybrid histidine kinase [Methylobacillus flagellatus KT]
          Length = 703

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 159/383 (41%), Gaps = 30/383 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVA----VFGPDGR-----IKLSNPAFRSLWKTEE 471
            +   E           +  D + +G+     V+  DG+        +N AF S      
Sbjct: 195 ERARAEHALCLTEMRSQQIFDSIDQGMCIIRMVYDRDGKPIDYIFLHANAAFASQTGLAN 254

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                G  +R +A    +++ ++       +I   F+ + ++L+   E+    + +    
Sbjct: 255 VI---GKGMRELAPHHEQFWFDTYARIDRTSIPERFEHKAEALKRFYEVYGFRIDD---- 307

Query: 532 PLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             P   T+   F +++  + AE+AL        KA++ K+ F+  VS+ELR+PL  I+  
Sbjct: 308 --PEEHTVCVLFKDISSRIAAEQALL-------KANKAKDDFLAVVSHELRNPLNLILLN 358

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +LL             +  E +S +   L  +V+D+LDL+ ++ G + L   ++    L
Sbjct: 359 AELLARIPEAQTQPIIQRTAETLSRTVKNLAIVVDDLLDLSRINTGKLALQCHSLHFEPL 418

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +  +  S   +   N I +       L    AD  R+ Q+   +LSNA+ F+  G  + +
Sbjct: 419 VRRLITSFQDEAQHNGIALSHALQPNLL-IHADAARIEQVIWNLLSNALKFTPSGGAIHV 477

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
             +  +   I  V + G  I  ++   VF+ FV       R   G+G+GL++V+  + LH
Sbjct: 478 SLSSRDDWAILEVSDTGQGIAAEVLPHVFDMFVQEDSSSSRIKGGLGIGLALVKQIVELH 537

Query: 769 GGHVSISSSDEG-VTTINCRIPS 790
            G V   S  +G        +P 
Sbjct: 538 QGKVEACSRGKGTGANFRVFLPL 560


>gi|125972808|ref|YP_001036718.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|256004998|ref|ZP_05429970.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|281417007|ref|ZP_06248027.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
 gi|125713033|gb|ABN51525.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|255991067|gb|EEU01177.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|281408409|gb|EFB38667.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
 gi|316940955|gb|ADU74989.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 1313]
          Length = 424

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 123/287 (42%), Gaps = 20/287 (6%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---------------ADEI 568
             ++Y   P+   Q +         +  ER +    E   +               A+E 
Sbjct: 103 GAVDYLTKPIDEYQLINRINVYLKMIEKERTMNILLEKRVREQTEELRAAKEAAEAANEA 162

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLL---KTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           K+ F+ ++S+ELR+P+  +   T ++             K    +     +   LL LVN
Sbjct: 163 KSIFLANISHELRTPINILYSTTQIINSYLNEDKVLDREKIRSKIAMQQQNCYRLLRLVN 222

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +++D+  +D+G  +L +S   + +++  +   +        + +   +D +      D+ 
Sbjct: 223 NLIDITKIDSGYFELKFSRCNIVEVVENITLLVVEYAKNKGVSLIFDTDVEEKIISCDQN 282

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + +I   +LSNA+ F+ +G ++ ++          SVK+ G  I ED  + +F RF   
Sbjct: 283 AMERIILNLLSNAIKFTPRGGSIKVEVKDCGKTVAISVKDTGIGIQEDKLEMIFERFKQV 342

Query: 746 AH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +    +  G G+GLS+V+S + LHGG +S+ S     +     +P+
Sbjct: 343 DNLLTRKNEGSGIGLSLVKSLVELHGGKISVKSEYNRGSEFTVELPA 389


>gi|332518960|ref|ZP_08395427.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
            5H-3-7-4]
 gi|332044808|gb|EGI81001.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
            5H-3-7-4]
          Length = 1474

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 98/516 (18%), Positives = 207/516 (40%), Gaps = 53/516 (10%)

Query: 307  HTYEILHNLTVAIA----IFDQNRYLQFH-----NRSFVELWEIDLAFLATNPSNDELLE 357
              +++  NL         I ++N           N ++ ++  +++  +     +  +  
Sbjct: 842  KYHKLFQNLNEGFIHAKIITNKNGEAVDWEYIDVNPAYAKILNLEIKDIIGKKVSKVVPS 901

Query: 358  FLRSANKLPEQLNWKTWKENIFS-VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             ++  N+         W +       K      + +     +  +V      +G      
Sbjct: 902  LIKDPNQ---------WIQKYGETALKGKNQTIEGYVEAINKYFYVNTFCPKKGEFAGTI 952

Query: 417  ENLTVQVDLETKYN----TLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSL----- 466
             + T     E         L +VQ  T      G        G +  S+  FR       
Sbjct: 953  SDFTELKKKEEDLIKSKYELDRVQSIT----HVGSWTMDIATGNLSWSDELFRIFKLDTN 1008

Query: 467  ----WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                       L        ++    +   +   ++L   +I +  D      G +    
Sbjct: 1009 QQPPNYEIHKNLFTNESWEKLSKAVDKAIKKGKPYELELNMIKANGD-----HGWMWAKG 1063

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            ++V+E   I +    +      + ++ +A     ++ E    A++ KN F+ ++S+E+R+
Sbjct: 1064 EAVIEKGKI-VKLRGSAQDITTIKENEKALIIAKKQAEDAVLANKHKNFFLANMSHEIRT 1122

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            P+++++GF DLL++  L     K+ +Y+E I  +S  LLNL++DI+D++ +++  +K+ Y
Sbjct: 1123 PISSVLGFADLLRSDDL--TKDKKLRYIEIIDNNSKQLLNLIDDIIDVSKIESDELKIVY 1180

Query: 643  STIVLNDLLNEVKQSIAT---KMHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSN 697
                +  L+  +  +      +  + +++++ I    L   +   D +RL Q+ S +++N
Sbjct: 1181 KDCNVAQLIENLTLTFEQIKVQKEKTHLKLEAIIPSNLRNLNISTDPRRLEQVLSNLINN 1240

Query: 698  AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
            ++ FS KG T+     ++     F VK+ G  I +   K +F RF         +  G G
Sbjct: 1241 SIKFSDKG-TISYGFQKNENYLTFFVKDEGIGIAKCKQKEIFERFKQVNYKDSAKYGGTG 1299

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            LGLSI ++ + L GG +++ S     TT    IP K
Sbjct: 1300 LGLSICKAIVTLLGGDITVESKRYKGTTFKFNIPIK 1335


>gi|332702845|ref|ZP_08422933.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552994|gb|EGJ50038.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 562

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 16/254 (6%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +       L  +      A   K+ F+ ++S+E+R+PL  I+G  +L +         
Sbjct: 165 YAELQERIAELESQKALAVAATRAKSEFLANMSHEIRTPLNAILGMAELAERR----CPQ 220

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
              ++ + I  S   LL+++NDILDL+ ++AG            + L+ V   ++    E
Sbjct: 221 HVKEHFKLIRQSGRALLDIINDILDLSRIEAGRFAPQRKPFQPREALDSVLGPMSMIAEE 280

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF---- 719
             + + +     +    V D  RL Q+ + +L NA+ F+ +G  + L  AR+  D     
Sbjct: 281 KGLALNLAVSPTVPVWLVGDEGRLRQVLTNLLGNALKFTERG-RIELHVAREPSDLQHPE 339

Query: 720 ----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVS 773
                FSV++ G  IP +  +++F  F         +  G GLGL+I +  +   GG + 
Sbjct: 340 AVRLHFSVRDTGIGIPAERQQAIFQSFSQAEASAHAKYGGTGLGLTISKELVERMGGRIW 399

Query: 774 ISSSDEGVTTINCR 787
           + S     +T +  
Sbjct: 400 VDSEPGLGSTFHFT 413


>gi|260902965|ref|ZP_05911360.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037]
 gi|308107447|gb|EFO44987.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037]
          Length = 566

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  +   ++   S+  E  L ++ E   ++++    FV  +++ELR+PL  ++G  +LL 
Sbjct: 175 SDLVHGVISRHLSLEREVELRKRAE---ESEKATKEFVAMINHELRTPLNGVLGSAELLS 231

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++LG     Q QY+  +  S  +L  ++ND+LD + ++AG+M++       +DL   + 
Sbjct: 232 KTQLG---EDQRQYLGNLIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAIT 288

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              A K  E  I   +     +  F + D +R+ QI   ++ NA+ F+  G  V L+   
Sbjct: 289 GVFAAKAAEKRIHFSIDKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGGVV-LRVEW 347

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
            NG   F V++ G  IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +
Sbjct: 348 VNGTAFFEVEDTGIGIPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEI 407

Query: 773 SISSSDEGVTTINCRIPSKE 792
           S  S +   TT    IP KE
Sbjct: 408 SFESEERKGTTFKVSIPLKE 427


>gi|171912499|ref|ZP_02927969.1| PAS/PAC Sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 684

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 152/377 (40%), Gaps = 9/377 (2%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    +         DH S  +A    + R K  N A+   +   E +   G H+
Sbjct: 166 ERQRVEDALRSSETQLRLVTDHASVLLAQVDREHRYKFVNGAYAERYG-REVKDIVGLHV 224

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I    +      +    F      F+ E    +     +         +       + 
Sbjct: 225 SEIVGEKAYLAALPELTAAFLGQRVEFEKELPYEELGPRWIHVVYKAEHDLTGQVVSVVA 284

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T+  RAE+ L E  +    A   K+ F+  +S+ELR+PL  ++      + +   
Sbjct: 285 VLTDLTERKRAEQELKEARDQALAASGAKDEFLARLSHELRTPLNPVLLLAS--EAADNP 342

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +       I  +  +   L++D+LD+  +  G + L    + L+D++ +   S+  
Sbjct: 343 HLPDEVRADFHTIRKNVDLEARLIDDLLDVTRISRGKLSLELRRVDLHDVVRDAFTSVKG 402

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +  +  +R+++  DG+    + D  RL QIF  +L+NA+ F+  G  +++          
Sbjct: 403 EADKKRLRLQLSLDGESPYVLGDAVRLQQIFWNLLNNAVKFTPDGGRIVVATQIKEAWVT 462

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH-----RGQRRGVGLGLSIVESFINLHGGHVSIS 775
             V+++G  + ++   SVF+ F    H       Q  G+GLGL+I    + +H G +S S
Sbjct: 463 VEVQDDGIGLSKEELTSVFDAFAQGEHSWPNGSHQFGGLGLGLAISRMLVEMHSGEISAS 522

Query: 776 SSD-EGVTTINCRIPSK 791
           S   +       RIP +
Sbjct: 523 SPGRDAGAIFRVRIPLQ 539



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 65/214 (30%), Gaps = 28/214 (13%)

Query: 123 HYIKLSKATEKLRKEGQ---------SFDLVAETQN-------DCAIKIEGRVSGSCAFL 166
              ++S A + L+              F L    +N          ++ + R        
Sbjct: 93  SAAEISVAVKALQNGAHDYLEKNGADGFALRRAVENAMEKAAIQRQLETQRRALADKNAQ 152

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN- 225
               +  +  E AE       L +  +  +++ D    L+   D+     + N +Y +  
Sbjct: 153 LEEHVTKLEQEAAERQRVEDALRSSETQLRLVTDHASVLLAQVDREHRYKFVNGAYAERY 212

Query: 226 ----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
                +  G+   + +GE   L              +E  F + +   E G    + + +
Sbjct: 213 GREVKDIVGLHVSEIVGEKAYLAALPELTAAFLGQRVE--FEKELPYEELGPRWIHVVYK 270

Query: 282 VLNSFGEAGIAI-----DVSKEITVNDQLTHTYE 310
             +      +++     D+++      +L    +
Sbjct: 271 AEHDLTGQVVSVVAVLTDLTERKRAEQELKEARD 304



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 89/284 (31%), Gaps = 26/284 (9%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
            +  +         +        ++              +  + ++   V D L  +   
Sbjct: 121 ALRRAVENAMEKAAIQRQLETQRRALADKNAQLEEHVTKLEQEAAERQRVEDALRSSETQ 180

Query: 312 L----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
           L     + +V +A  D+    +F N ++ E +  ++  +     ++ + E    A  LPE
Sbjct: 181 LRLVTDHASVLLAQVDREHRYKFVNGAYAERYGREVKDIVGLHVSEIVGEKAYLA-ALPE 239

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNG-QTLHVIVTS-NPRGG----TIWMFENLTV 421
                        + +  E  K+  +   G + +HV+  + +   G     + +  +LT 
Sbjct: 240 L--------TAAFLGQRVEFEKELPYEELGPRWIHVVYKAEHDLTGQVVSVVAVLTDLTE 291

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR------IKLSNPAFRSLWKTEENRLS 475
           +   E +                E +A    + R      + L++ A  +    +E R  
Sbjct: 292 RKRAEQELKEARDQALAASGAKDEFLARLSHELRTPLNPVLLLASEAADNPHLPDEVRAD 351

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             T IR      +R  ++       +    S +  R  L   + 
Sbjct: 352 FHT-IRKNVDLEARLIDDLLDVTRISRGKLSLELRRVDLHDVVR 394


>gi|260768322|ref|ZP_05877256.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972]
 gi|260616352|gb|EEX41537.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972]
          Length = 568

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 118/236 (50%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   ++++    FV  +++ELR+PL  ++G  +LL  +   SL+ +Q  Y+  +  S  
Sbjct: 195 RKRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDT---SLDPEQLSYLTNLQHSGD 251

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +L  ++ND+LD + ++AG+M+L  +     DL + +    + K  E  I   V + G+  
Sbjct: 252 MLRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKAREKKIEFVVNTRGEFP 311

Query: 679 S-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
           + ++ D +R+ QI   ++ NA+ F+ +G+ V + A   +   +  + + G  IP     +
Sbjct: 312 TYWIGDVERINQILVNLVGNAIKFTHRGA-VTVAARWVDERLLLRISDTGIGIPLAAHDT 370

Query: 738 VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F+ F         Q  G GLGL+I ++ + L  G +  SS +   T     IP +
Sbjct: 371 LFDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGEGTEFFVSIPLQ 426


>gi|254412814|ref|ZP_05026587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180549|gb|EDX75540.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 409

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 10/290 (3%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           A  I   + + + LQ   E L   V E         +T             E  L     
Sbjct: 128 AKTIQLLNQKEQQLQQANEQLEHRVAE---------RTSELQQANDQLRTLESQLRLALA 178

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             ++    K+  +  VS+E R+PLT I    ++L+         KQ ++ + I  S   L
Sbjct: 179 QEQELSHFKSRIISTVSHEYRTPLTTINSSAEILERYLHKLDAEKQRKHFQRIQLSVKHL 238

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+L +   +   ++ N   I L     E+ + +   + E + ++     G     
Sbjct: 239 TALVEDVLFINKAELEKVEFNPEPIYLVSFFEEIVEGLQITVDEKH-QLFFTHHGSCECA 297

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D + L Q+ + +LSNA+ +S +G  + L  + +    +F V++ G  IP+     +F 
Sbjct: 298 NLDPKLLRQMITNLLSNAIKYSPQGGKITLNLSCEENQVVFQVQDKGIGIPQADQAKLFE 357

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F    + G   G GLGLSIV+  ++LHGG +++ S     TT    +P 
Sbjct: 358 SFSRAGNVGTIAGTGLGLSIVKKCVDLHGGEITVKSEVGFGTTFTVTLPL 407


>gi|71905874|ref|YP_283461.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71845495|gb|AAZ44991.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 738

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 141/301 (46%), Gaps = 11/301 (3%)

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           D + L  AI+ + D      + +  L++   L  ++  L     ++  +   ++  AE  
Sbjct: 279 DRYPLVLAIVATDDLFLAGWRRSAWLIAGVSLVGAMSLLIVLLILVRNLRQREADMAE-- 336

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +   A   A+  K+SF+  +S+E+R+P+  I+G   LL  S  GS   ++ +YV  I 
Sbjct: 337 MEQLKLAAEAANLAKSSFLATMSHEIRTPMNGILGMAQLLLMS--GSAEDERHEYVRTIL 394

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+L+NDILD++ V+AG ++L  +      ++ EV      +     + I     
Sbjct: 395 NSGQTLLSLLNDILDISKVEAGKLELKPAVFAPQGVIEEVVGLFFAQAEAKGLSITAQWH 454

Query: 675 GK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNG--DFIFSVKNNGSS 729
           G  +  + AD+ RL QI + +LSNA+ F+ +G+  I   +  R++G     F+V ++G  
Sbjct: 455 GPAVQRYRADQIRLRQILTNLLSNAVKFTKEGAIRIEAREIEREDGWARLEFAVIDSGIG 514

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +    +F  F         Q  G GLGLSIV S   L GG   + S          R
Sbjct: 515 IAPEKRALLFKPFSQLDSSATRQYGGTGLGLSIVRSLAELMGGEAGVESQPGQGARFWVR 574

Query: 788 I 788
           I
Sbjct: 575 I 575


>gi|317403605|gb|EFV84095.1| proline sensor PrlS [Achromobacter xylosoxidans C54]
          Length = 944

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 142/368 (38%), Gaps = 31/368 (8%)

Query: 431 TLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              +     +D     + V    DGR+   N                        A   +
Sbjct: 373 ESEEFNRTVLDTAPVALCVLSRLDGRVVFGNALAIQWLG---------------IAVGEQ 417

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVT 546
             +  +   L   ++ +    R     T        L  +  P    +    +  F +++
Sbjct: 418 PRDSPEANKLLRQVLGA---SRPGTIETFRTHEGRPLFVAFAPTRYKKQDVVLCAFADIS 474

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                E  L +  +   +A+E K++F+  +S+E+R+PL  ++G  ++L    L  L+ +Q
Sbjct: 475 ARAEMEHTLAQAKQQADRANEAKSTFLATMSHEIRTPLYGVLGTLEVLS---LTHLDDEQ 531

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++V+ I  SS IL  L++DILD+  +++G + L        +L+     S A    +  
Sbjct: 532 RRHVDRIQDSSVILQQLISDILDITKIESGQLGLEMDGFDPRELVQHCVASYAGMAEQKG 591

Query: 667 IRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG---DFIF 721
           + I    D       V D  R+ QI + +++NA+ F+  G  V  L+A           F
Sbjct: 592 LVIYSCIDTSTPAWVVGDGGRIRQILNNLVNNAIKFTDSGHVVARLRAEVLPDGRARLHF 651

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V ++G  I  +    +F  F          RG G+GLSI      L G  + ++S    
Sbjct: 652 QVVDSGVGISAENQVCLFEPFYQIDSGSHLVRGAGIGLSICARLAELMGSTIQVTSELGL 711

Query: 781 VTTINCRI 788
            ++ +  I
Sbjct: 712 GSSFSIAI 719


>gi|269963147|ref|ZP_06177482.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832111|gb|EEZ86235.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 827

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 117/241 (48%), Gaps = 11/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +    + +   K +F+  +S+E+R+P+  ++G   +L  ++   L  +Q +++  + 
Sbjct: 360 LERERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTQ---LTDEQRKHLNTLY 416

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   ++ L+N+ILD + ++ G ++L+ +   +  +L  +     T   E  ++ ++IS+
Sbjct: 417 DSGDHMMTLLNEILDYSKIEQGHIELDNTPFPIESILGSINSVYHTLCAEKGLQFRIISN 476

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSS 729
              G +   D+ RL Q+   +L+NA+ F+ +G  V ++ A     D      SVK+ G  
Sbjct: 477 VPEGRWYNNDKARLRQVLFNLLNNAVKFTDRG-FVEVELAEHVQNDKTKLTISVKDTGIG 535

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D  K +F  F        RR  G GLGL+IV+      GG +++ S +   T     
Sbjct: 536 INPDAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQISEHMGGGITVQSQECIGTKFVVE 595

Query: 788 I 788
           +
Sbjct: 596 L 596


>gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
          Length = 919

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   +      L++ Q  Y+  I
Sbjct: 273 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQVMKTPLSATQIDYLHTI 329

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L +   +L + ++EV   +A   H+  + + +  
Sbjct: 330 ERSANNLLTIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNV 389

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNGS 728
              +    + D  RL Q+ + +L NA+ F+ KG+  + ++        +     V + G 
Sbjct: 390 RNDVPEHVLGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTAQAVELEVQVHDTGI 449

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  IN  GG ++  S     +T   
Sbjct: 450 GISERQQSQLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWF 509

Query: 787 RI 788
            I
Sbjct: 510 HI 511


>gi|256829197|ref|YP_003157925.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578373|gb|ACU89509.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 918

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 164/388 (42%), Gaps = 24/388 (6%)

Query: 417 ENLTVQVDLETKYNTLVKVQG-----ETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTE 470
            NL  Q  L  + + L K QG     ++I H+  G       + R+  S+ A+R    T+
Sbjct: 386 NNLAQQEALRQQADALHKTQGILEQAQSIGHM--GSWRLDLVEKRLTWSDEAYRIFGATQ 443

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLE 527
           +           I     R   +             ++ E + +    G +  + +  + 
Sbjct: 444 DEVEPSYELFMAIVHPDDRAAVDHAYASSIKENGERYEIEHRIVRRDDGEISFVIERCVH 503

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                    +++    ++T+  R E+ L    E    A+  K+ F+ ++S+E+R+PL  I
Sbjct: 504 ERDAEGTVIRSVGMVQDITERKREEKELLLAKEHAEAANRAKSEFLANMSHEIRTPLNGI 563

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LL+TS     + ++ Q+      S+  L +L++DILDL+ V+A +M +      L
Sbjct: 564 LGMLQLLETSVQ---DKEELQFCALAIQSTNRLTSLLSDILDLSRVEASMMLIRSERFNL 620

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  L +          +  + +    D  L    V D  RL Q+ + ++ N+  F+ +G 
Sbjct: 621 HSALTQTIDLFGPVAVQTGVTLTAHLDPGLPIWVVGDSIRLQQVLTNLIGNSFKFTKRGH 680

Query: 707 TVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGL 758
            V ++A        D     F++++ G  I E    ++F  F   +  +    +G GLGL
Sbjct: 681 -VHVEAYPLPSRSIDTLRVFFAIEDTGCGIAEKDIGNLFQPFTQVSQGYNRNHQGAGLGL 739

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINC 786
           +I +  + L GG++++ S +   TT   
Sbjct: 740 TISKQLVALMGGNMAVESEEGVGTTFAF 767


>gi|255731748|ref|XP_002550798.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404]
 gi|240131807|gb|EER31366.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404]
          Length = 1128

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 13/263 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A        V +   + +  T   EA   A+  K+ F+ ++S+E+R+PL  IIG T L 
Sbjct: 463 DALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLS 522

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L   Q + +  +   +  LL +++DILD++ ++A  M +      L   +   
Sbjct: 523 LDTE---LTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 579

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VIL-- 710
            +++A K  E N+ +    D     + + D  RL Q+   +  NA+ F+ +G   V +  
Sbjct: 580 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEGKVSVSVKK 639

Query: 711 --KAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
             K   D+   +    V + G  I +D    +F+ F        R   G GLGLSI +  
Sbjct: 640 SDKVGEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 699

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           I+L GG + ++S     +     
Sbjct: 700 IHLMGGEIWVTSEYGSGSNFYFT 722


>gi|209522685|ref|ZP_03271243.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496734|gb|EDZ97031.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1263

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 124/249 (49%), Gaps = 15/249 (6%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            AL E   A   A+  K++F+ ++S+ELR+PL  I+GF+ L+  + + +  S++   +  I
Sbjct: 785  ALEEARRAADAANRAKSTFLANMSHELRTPLNAILGFSQLMSDNPIFAEGSQE---LAII 841

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + S   LL L+NDILDL+ ++AG + L  +   L+ LL  +++    K    +I + +  
Sbjct: 842  NRSGEHLLELINDILDLSKIEAGKITLEMNHFDLHRLLETLEEMFKLKAAHKDIVLNINR 901

Query: 674  DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------KAARDNGDFI--FS 722
               L    + D ++L Q+   +L+NA+ F++ G   +         +A  D+   +  F 
Sbjct: 902  PLDLPRYLLGDEKKLRQVLINLLANAIKFTTAGEVTLYTKTLPTPKEAHTDSNTVLMQFI 961

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V++ G  I      ++F+ FV        + G GLGL I   F+ L GG +++ S+    
Sbjct: 962  VEDTGPGISPQEIDALFDAFVQTETGKYSQEGTGLGLPISRKFVQLMGGDITVDSTMGVG 1021

Query: 782  TTINCRIPS 790
            +     IP 
Sbjct: 1022 SKFIFEIPL 1030


>gi|163800315|ref|ZP_02194216.1| sensor protein LuxQ [Vibrio sp. AND4]
 gi|159175758|gb|EDP60552.1| sensor protein LuxQ [Vibrio sp. AND4]
          Length = 859

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 154/393 (39%), Gaps = 24/393 (6%)

Query: 410 GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G  I  F+++   ++    +     K   +  +     + V+  +  +   NPA R    
Sbjct: 333 GSDIEEFDHIGSTLESTFEELEAQKKSFRDLFNFALSPIMVWSEESALIQMNPAARKELA 392

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            ++         ++       +   +        +     ++      +   +   +   
Sbjct: 393 IDDGHEIMHPVFQDFKDKLIPHLKMAAQGATLTGVNVPIGNKIYRWNLSPIRVDGDI--- 449

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                  +  ++   ++T  + AE+          K+ + +  F+  +S+E+R+P+  I+
Sbjct: 450 -------SGIIVQGQDITTLIEAEKQSNVARREAEKSAQARADFLAKMSHEIRTPINGIL 502

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LLK S       +Q   ++ +  S   LL ++NDILD + ++ G   +   +   N
Sbjct: 503 GVAQLLKDSVN---TQEQKNQIDVLCHSGEHLLAVLNDILDFSRIEQGKFNIQKHSFSFN 559

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           D +  ++        +  + + + ++         D+ RL QI   ++SNA+ F+  GS 
Sbjct: 560 DTMCTLENIYRPTCIKKGVELVIENNLNPNVEIFTDQIRLNQILFNLVSNAVKFTPSGS- 618

Query: 708 VILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           + L+A        +N   + ++ + G  I  D    +F  FV       R   G GLGL+
Sbjct: 619 IWLRAELEQLDGAENSVLVVTLTDTGIGIESDKIDQMFEPFVQEEATTTREYGGSGLGLT 678

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           IV++ I++  G V + SS    T     +P ++
Sbjct: 679 IVKNLIDMLDGDVKVRSSKGMGTKFVITLPVRD 711


>gi|294054668|ref|YP_003548326.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614001|gb|ADE54156.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1009

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 12/247 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              + AL    +    A   K  F+  +S+E+R+P+  IIG+TDLL+ + L  L ++Q+ 
Sbjct: 604 QENQEALQIARDRADAASVAKGEFLAMMSHEIRTPMNAIIGYTDLLRQTNLDELQAEQA- 662

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               I  S   LL L+N+ILD + +++  ++L  S + +  ++ E  + I  +  E  ++
Sbjct: 663 --SIIKRSGKALLELINNILDYSKIESRTLELETSNVDVEQVVCEALEYILPQSKEKALK 720

Query: 669 IKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIF 721
           I       +  ++  D  RL QI     +NA+ F+  GS  I       +++ D     F
Sbjct: 721 IDFEISETVNAAYWGDPHRLRQILMNFANNAVKFTDTGSIRIDVDLKHSESSPDTHALYF 780

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  IPED    +F  F        R   G GLGL I +  I    G V +SS   
Sbjct: 781 RVTDTGCGIPEDKFDRLFKPFSQVDSSTTRQFGGTGLGLVISKRLIERMDGRVWVSSQVG 840

Query: 780 GVTTINC 786
             TT + 
Sbjct: 841 EGTTFHF 847


>gi|256783375|ref|ZP_05521806.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1331

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 16/269 (5%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            AQ            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL 
Sbjct: 737  AQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLA 796

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +   +L  KQ +Y   I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+
Sbjct: 797  QNPSRNLTPKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVE 856

Query: 656  QSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +      +  +   V+ + G     + D  RL Q+   +LSNA+ F+ +G  V L    
Sbjct: 857  ATFRPMTSQKGLEFTVVTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGG-VELAVEP 915

Query: 715  DNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
               D              F VK+ G  IPE   +S+F  F         +  G GLGLSI
Sbjct: 916  APDDEVPGGVVRGGPVVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSI 975

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIP 789
                  L GG V++ S+ +  +T    +P
Sbjct: 976  TREIAQLLGGAVTVDSTPDRGSTFTLYLP 1004


>gi|168702739|ref|ZP_02735016.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1573

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 124/685 (18%), Positives = 245/685 (35%), Gaps = 82/685 (11%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDF------LVWHRDQAG-----DILWAN 219
            L G   ++ E     ++L +    F+ LF+S+D        V   D AG       L  N
Sbjct: 757  LVGAMQDVTERRRAEEQLRDSEQRFRSLFESMDEGYCVVEPV--LDPAGAAVDYRYLLVN 814

Query: 220  ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS-SSALEKNFCETVSTLEHGNNKSYK 278
             + + +T  + IV + A    R++     +  +   +   E       +       + + 
Sbjct: 815  PALEAHTGLKDIVGRTA----REIMPTHERHWIEGYARVAETGRPFRRTDRVADLGRWFD 870

Query: 279  IVRV-LNSFGEAGIAI---DVSKEITVNDQLTHTYEILHNLTV-----AIAIFDQNRYLQ 329
            +    +   G   + +   D+S        L    E L  L       A+ + D++  + 
Sbjct: 871  VSAFRVGPPGSRQVGVLFTDISDRKRAEAMLREKDERLQLLVDRARDYAVLVTDRDGRVI 930

Query: 330  FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
                    +     A +   P++       R+A  +P +      +E      +      
Sbjct: 931  EWAGGAEGITGFAPADVLGRPADVIFTPADRAAG-VPAREMELAAREGRAEDKRWHVRKD 989

Query: 390  DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET---------- 439
             +    +G  + +        G   +F + T +   E     L                 
Sbjct: 990  GSEFFADGVMVPLRDEDGALHGFGKVFRDATPRKRTEEGVQFLADASASLAELVDYQSTL 1049

Query: 440  --IDHLSEG-------VAVFGPDGR-----IKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
              I +L+ G       V +   DGR     +  + PA  S  +  +    P      +  
Sbjct: 1050 QRIANLAVGGFADWCVVDLVDEDGRRERLAVTAAEPADVSAARAADTPADPAG-AAEVVP 1108

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
               R        DL  A   +     + L+   +L +  V  Y  +PL +   ++  +  
Sbjct: 1109 HVLRTGEPEVVTDLAEADPATAPQGPERLE---KLRALGVRSYMCVPLRSRGRVIGGMTF 1165

Query: 546  ----------TDSVRAERALT----------EKNEALRKADEIKNSFVQHVSYELRSPLT 585
                       D +R  + L           +    L++ D  K+ F+  +++ELR+PL 
Sbjct: 1166 LSSSPRRRFGPDELRVAQNLAERVTVAIENAQLYRTLQEQDRRKDEFLATLAHELRNPLA 1225

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             +     +L+ S +G       + +  +      L +LV+D++D+A V +G + L    +
Sbjct: 1226 PVRNGVQILRLSGVG---EAAGRTLNMMDRQLGHLTHLVDDLMDVARVSSGKVVLRNDRV 1282

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             L  +++   ++    +        +    +     AD  RL+Q+ + +L+NA  ++ +G
Sbjct: 1283 SLKAVVDAAVETSRQAVEAAGHEFVLRVAAEPLLLSADHTRLVQVLANLLNNAAKYTPQG 1342

Query: 706  STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
              ++L A RD GD + +V + G  IP DM   VF  F          + G+G+GL++V+ 
Sbjct: 1343 GRIVLSAQRDGGDAVVTVSDTGVGIPADMLPKVFELFAQVGTSIERSQGGLGIGLTLVKR 1402

Query: 764  FINLHGGHVSISSS-DEGVTTINCR 787
             + +HGG V   S      +T   R
Sbjct: 1403 LVEMHGGTVRAESPGPGRGSTFTVR 1427



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/504 (11%), Positives = 136/504 (26%), Gaps = 57/504 (11%)

Query: 41  IILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLH 100
           +++ I  R      +  + + L +   + S       +     + WD + +         
Sbjct: 504 VVIDITDRKRAENDLAASRARL-DYAVRASGIGFWYCDLPFDVLQWDERVK--------A 554

Query: 101 QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQN-DCAIKIEGRV 159
                P     + +F + +          A E+   +   +D+   T +     +   R 
Sbjct: 555 HFWLPPDARVTIDTFYDRIHPDDREPTRAAIERSIADRAGYDVHYRTVDPGTGAEKWVRA 614

Query: 160 SGSCAFLR---ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
            G   +         DG+  ++ +       +      F ++  + +  VW  D   + +
Sbjct: 615 IGGTYYDEAGAPKRFDGVTLDVTDQRRAEAAVRESSDRFAIVARATNDAVWDWDMRTNGV 674

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS-----------ALEKNFCET 265
           W N                      +    + ++R+++             + E  F + 
Sbjct: 675 WWNEGVTTLFGHARHDVGGDAAWWYEHIHPDDRERVVTGVHAVIDRGGASWSDEYRFRKA 734

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEILHNLTVAIAI 321
                   ++ + I     +    G   DV++     +QL         +  ++     +
Sbjct: 735 DGGYATVLDRGHAIHEGGKTVRLVGAMQDVTERRRAEEQLRDSEQRFRSLFESMDEGYCV 794

Query: 322 FDQ---------NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            +          +      N +      +           D +    R         + +
Sbjct: 795 VEPVLDPAGAAVDYRYLLVNPALEAHTGL----------KDIVGRTAREIM----PTHER 840

Query: 373 TWKENIFSVYKSSETHKDTWHLPN-GQTLHV---IVTSNPRGGTIWMFENLTVQVDLETK 428
            W E    V ++    + T  + + G+   V    V          +F +++ +   E  
Sbjct: 841 HWIEGYARVAETGRPFRRTDRVADLGRWFDVSAFRVGPPGSRQVGVLFTDISDRKRAEAM 900

Query: 429 YNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                +     +D   +  V V   DGR+         +       +  G     I    
Sbjct: 901 LREKDERLQLLVDRARDYAVLVTDRDGRVIEWAGGAEGITGFAPADVL-GRPADVIFTPA 959

Query: 488 SRYYNESDGWDLFAAIITSFDDER 511
            R           AA     +D+R
Sbjct: 960 DRAAGVPAREMELAAREGRAEDKR 983



 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 73/271 (26%), Gaps = 22/271 (8%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L      L ++   +   D    + F N     L     A     P  +       +  K
Sbjct: 148 LRLWQTALASIGDGVVTTDAAGRVTFLNPVAEGLTGWAAADARGRPLTEVFRIVNETTRK 207

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFE 417
             E    +  +            +       +G    +  +++P         G + +F 
Sbjct: 208 AVENPALRALQTGTI----VGLANHTVLIARDGSERPIDDSASPIRDETGAVAGAVLVFR 263

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +   E     L       ++   + +     DG I+  N      +       + G
Sbjct: 264 DITERKKAEIAQARL----AAIVESSDDAIIGKDLDGTIRSWNRGAERAFGYTAAE-AVG 318

Query: 478 THIRNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             I  +     R   E D  D       +  F+  R    G      D  L  S I    
Sbjct: 319 RSITLLVPP-ERLGEERDILDRLGRGERVEQFETVRVRKDG---RRVDVALTVSPIRDAE 374

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
                      D   A+RA   +  AL+  +
Sbjct: 375 GHITGASKVARDVTAAKRAERTRAAALQAGE 405



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/469 (11%), Positives = 136/469 (28%), Gaps = 61/469 (13%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
           ++RK+G+  D+            EG ++G+    R    D   ++ AE T      +  +
Sbjct: 353 RVRKDGRRVDVALTVSPIR--DAEGHITGASKVAR----DVTAAKRAERTRAAALQAGEV 406

Query: 193 SVFKV--LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
             +      D +       D+    ++  ++  +     G        + R     EI++
Sbjct: 407 GTYHWDVAADRI-----TGDRNFAAIFGVLTDDRPAAPVGDFLTVIHPDDRDRVGAEIRR 461

Query: 251 RMISSSALEKNFCETVSTLEHG--NNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
            + + +     +  T    E       + +      +   AG+ ID++      + L  +
Sbjct: 462 TLDTGAPFRSEYRVTGPAGERWLVARGTVERAADGGAVSWAGVVIDITDRKRAENDLAAS 521

Query: 309 YEILH-------------NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
              L              +L   +  +D+     F          +         + D  
Sbjct: 522 RARLDYAVRASGIGFWYCDLPFDVLQWDERVKAHFW---------LPPD---ARVTIDTF 569

Query: 356 LEFLRSANKLPEQLNWKTWKENIFS---VYKSSETH--KDTWHLPNGQTLHVIVTSNPRG 410
            + +   ++ P +   +    +       Y++ +     + W    G T +    +  R 
Sbjct: 570 YDRIHPDDREPTRAAIERSIADRAGYDVHYRTVDPGTGAEKWVRAIGGTYYDEAGAPKRF 629

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             + +  ++T Q   E                 ++ V  +         N    +L+   
Sbjct: 630 DGVTL--DVTDQRRAEAAVRESSDRFAIVARATNDAVWDWDMRTNGVWWNEGVTTLFGHA 687

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            + +         AA    + +  D   +   +    D    S               ++
Sbjct: 688 RHDVGGD------AAWWYEHIHPDDRERVVTGVHAVIDRGGASWSDEYRFRKADGGYATV 741

Query: 531 IPLPNA--------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +   +A        + +    +VT+  RAE  L +  +  R   E  + 
Sbjct: 742 LDRGHAIHEGGKTVRLVGAMQDVTERRRAEEQLRDSEQRFRSLFESMDE 790



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 72/248 (29%), Gaps = 30/248 (12%)

Query: 209 RDQAGDILWANI--------SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
            D AG + + N         +             + + E+ +   E    R + +  +  
Sbjct: 165 TDAAGRVTFLNPVAEGLTGWAAADARGRPLTEVFRIVNETTRKAVENPALRALQTGTIVG 224

Query: 261 NFCETVSTLEHGNNKSYK--IVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEILHN 314
               TV     G+ +        + +  G    A+    D+++             I+ +
Sbjct: 225 LANHTVLIARDGSERPIDDSASPIRDETGAVAGAVLVFRDITERKKAEIAQARLAAIVES 284

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
              AI   D +  ++  NR     +    A           +  L    +L E+ +    
Sbjct: 285 SDDAIIGKDLDGTIRSWNRGAERAFGYTAAEAVGRS-----ITLLVPPERLGEERD---- 335

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIW---MFENLTVQVDLET 427
             +     +  E  +      +G+ + V +T +P     G       +  ++T     E 
Sbjct: 336 ILDRLGRGERVEQFETVRVRKDGRRVDVALTVSPIRDAEGHITGASKVARDVTAAKRAER 395

Query: 428 KYNTLVKV 435
                ++ 
Sbjct: 396 TRAAALQA 403


>gi|78776617|ref|YP_392932.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
 gi|78497157|gb|ABB43697.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
          Length = 896

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 118/242 (48%), Gaps = 12/242 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                + ++A E K+ F+ ++S+E+R+PL  I+GFT+LLK S    L  +QS++V+ I  
Sbjct: 369 KMDKISAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDS---GLQQEQSEFVDIIEK 425

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL ++N+ILDL+ +++  +++               +  A +  E +I +    D 
Sbjct: 426 SSENLLEIINNILDLSKIESNKLEIENILFNPIVEFESAVEVYAVRASEKHINLGCFIDP 485

Query: 676 KLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGS 728
            L  ++  D  +L +I   +LSNA+ F++    + +   + + D        F ++++G 
Sbjct: 486 SLEFWLKGDPTKLKEIIINLLSNAVKFTNNAGFINVNIRKIDSDKSTKTRVRFEIQDSGI 545

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  +    +F  F         +  G GLGL+I  +F+ L GG + + S     TT   
Sbjct: 546 GVTSEQKSKIFEAFSQADTSITRKYGGTGLGLTISSNFVELMGGKLDLESKLAEGTTFFF 605

Query: 787 RI 788
            +
Sbjct: 606 TL 607


>gi|330875680|gb|EGH09829.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 641

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 173/421 (41%), Gaps = 29/421 (6%)

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV---QGETIDHLSEGV 447
           T  +PN + + +  +SN    T+ ++ +   + + +T+   + +    +  T+ H  +  
Sbjct: 77  TLSMPNVRYVEIQDSSN----TVLIYIDQPREDEQQTRQMEIFQAPVYRQHTVAHGPQAT 132

Query: 448 AVFGPD-------GRIK--LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           +   PD       GR+   +SN AF    +    + +       +               
Sbjct: 133 SKKAPDSASQDYLGRVLVGMSNEAFSQRQQEILLKAAILALFALLFTFLFARRLALSLSR 192

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
             +A+  +    +     T   +SD     ++    N           +  R+   L + 
Sbjct: 193 PISAMGEALKAIQHGDYHTPLPISDDAELGALARHINNLAENLHRASLEQQRSVAQLIQA 252

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++    S+QS+Y    + S+ 
Sbjct: 253 REEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TSEQSEYATLATESTE 309

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++NDILD + ++   +++      L +L++    +      +  + +K+     L 
Sbjct: 310 HLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRKLTLKLHIQPGLE 369

Query: 679 --SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF--SVKNNGSSIP 731
               V D  R+ QI   ++ NA+ F+ +G  V ++A     DN    F  +V ++G  I 
Sbjct: 370 ALMVVGDPTRIRQILVNLIGNALKFTEQG-NVCVEAEWAMLDNDHLRFTCTVHDSGIGIE 428

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            D  +S+F+ F         +  G GLGL I        GG +   S +   +    +IP
Sbjct: 429 ADRLESMFDAFRQADSSISRRYGGTGLGLPIARQLAERMGGTLRAQSQEGSGSVFTLQIP 488

Query: 790 S 790
            
Sbjct: 489 L 489


>gi|126661095|ref|ZP_01732177.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           CCY0110]
 gi|126617639|gb|EAZ88426.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           CCY0110]
          Length = 828

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 115/667 (17%), Positives = 253/667 (37%), Gaps = 71/667 (10%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           +L   Y          ++     +  + L      +V   D+ G +++ + + +K     
Sbjct: 184 NLIKAYRNNRSRQQAEREKEASENKLQALLTYSSDIVSIFDKEGKLIYNSPTAEKIYGFS 243

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE------HGNNKSYKIVRV- 282
               Q+    +  L   + + R+ +S +   +  + + T++             + V   
Sbjct: 244 LEEMQQM--RTFDLIHPDDRARVGNSFSQLLDHPQEIITVQYRYQTKSNEYIWIETVASN 301

Query: 283 ----LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI-AIF--------DQN-RYL 328
                N  G    + ++S+       L  + +    +   I  +F        D + + L
Sbjct: 302 QLHNPNIKGIVANSRNISERKQAEKALRESEQKFRQIAENIREVFWIIDISKTDPSYQNL 361

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
            + + +  ++W     ++  NP+  + +E +   ++   + ++  W++    + +    +
Sbjct: 362 TYASPTCKKIWGYSPDYMYENPT--KWIESIHPDDRDRIKRDF--WQK----LLEGEFDY 413

Query: 389 KDTWHLPNGQTLHVIVT-------SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE--- 438
           +      +G    +          S        + +++T Q   E +   L +   E   
Sbjct: 414 QYRIIRSDGTQRWIRDRGFTIQNQSGDLVRVAGLAQDITEQKKREQEIKRLNEQLEERVS 473

Query: 439 --------TIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                    ++ L + V V  P+  ++   N  F      + ++   G  I +       
Sbjct: 474 QRTAELEMLLNTLPDFVFVVEPETMKLLFCNQVFAKGIGFDHHKQVQGKTIFDCFNPEIA 533

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-----MLTFVN 544
            Y       +F +  T   +E  +L        D   +   +PL N+       + T  +
Sbjct: 534 DYFAQQNQQVFDSGETLHLEEIITLPD-----GDHYFDTYKVPLKNSHGEVYALLATSRD 588

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-- 602
           VT+ V+ ++ L E+   L   ++  +SF   VS++LR+PL +I GF + LK     S   
Sbjct: 589 VTELVKTKQVLIEQTTQLEATNQELDSFCYSVSHDLRAPLRHIHGFVNALKPRLFNSDVK 648

Query: 603 -NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            + K   Y++ I  SS  +  L++ +L L+ V  G  +L +  + LN ++      + + 
Sbjct: 649 DDPKVIHYLDVIEKSSQKMGRLIDGLLTLSRV--GRRELVFHEVNLNAVVKTAIDLVCS- 705

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
               NI  K+   G+L + + D   L Q+F  ++ N++ FS   + + ++        +F
Sbjct: 706 -EGINIEFKI---GQLPTVLGDSALLQQVFINLIQNSVKFSQGQNPIQIEVDCLEDGTLF 761

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V +NG        + +F  F     + +  G G+GLSIV+  I+ HGG +   S     
Sbjct: 762 -VADNGVGFDMKYAEQLFGAFQRLHSQKEFEGTGIGLSIVQRIIHRHGGRIWARSGVGEG 820

Query: 782 TTINCRI 788
            T   ++
Sbjct: 821 ATFYFKL 827



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/455 (13%), Positives = 143/455 (31%), Gaps = 74/455 (16%)

Query: 36  TTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEI 95
                  L+   RN+ +++  E     SE     +K  +LLT ++ +  ++D + +   I
Sbjct: 178 FLTTCANLIKAYRNNRSRQQAEREKEASE-----NKLQALLTYSSDIVSIFDKEGKL--I 230

Query: 96  IGQLHQRIDIPQTDTDLLSFENW--LKFHHYIKLSKATEKLRKEGQ---SFDLVAETQND 150
                       +  ++     +  +      ++  +  +L    Q   +     +T+++
Sbjct: 231 YNSPTAEKIYGFSLEEMQQMRTFDLIHPDDRARVGNSFSQLLDHPQEIITVQYRYQTKSN 290

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
             I IE   S       I  +      ++E     K L      F+ + +++  + W  D
Sbjct: 291 EYIWIETVASNQLHNPNIKGIVANSRNISERKQAEKALRESEQKFRQIAENIREVFWIID 350

Query: 211 -QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET---- 265
               D  + N++Y           +K  G S     E   K + S    +++  +     
Sbjct: 351 ISKTDPSYQNLTYA------SPTCKKIWGYSPDYMYENPTKWIESIHPDDRDRIKRDFWQ 404

Query: 266 -----------VSTLEHGNNKSYKI--VRVLNSFGE----AGIAIDVSKEITVNDQLTHT 308
                            G  +  +     + N  G+    AG+A D++++     ++   
Sbjct: 405 KLLEGEFDYQYRIIRSDGTQRWIRDRGFTIQNQSGDLVRVAGLAQDITEQKKREQEIKRL 464

Query: 309 YE---------------ILHNLTVAIAIFDQNR-YLQFHNRSFVELWEIDLAFLATNPSN 352
            E               +L+ L   + + +     L F N+ F +    D        + 
Sbjct: 465 NEQLEERVSQRTAELEMLLNTLPDFVFVVEPETMKLLFCNQVFAKGIGFDHHKQVQGKTI 524

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLH-----VIVT 405
            +           PE  ++  + +    V+ S ET   ++   LP+G          +  
Sbjct: 525 FDCFN--------PEIADY--FAQQNQQVFDSGETLHLEEIITLPDGDHYFDTYKVPLKN 574

Query: 406 SNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGET 439
           S+      +    ++T  V  +            T
Sbjct: 575 SHGEVYALLATSRDVTELVKTKQVLIEQTTQLEAT 609


>gi|84390468|ref|ZP_00991479.1| sensor protein TorS [Vibrio splendidus 12B01]
 gi|84376728|gb|EAP93604.1| sensor protein TorS [Vibrio splendidus 12B01]
          Length = 1005

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 112/234 (47%), Gaps = 7/234 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A   K++F+  +S+E+R+P+  ++G   LLK + L  L   QS Y + I+ S   LL
Sbjct: 463 AEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPL---QSGYADIINRSGKNLL 519

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ND+LD + ++AG +++  ++  L  ++ +  Q +  +  E  +      +  +  + 
Sbjct: 520 AILNDVLDYSKIEAGHLEIRAASFDLYQMVQDTYQLMEGRAAEKKLNFDFHIENDVQRYW 579

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMCKSV 738
             D  R+ QI + ++ NA+ F+  GS  + +     D    +F V + G  I       +
Sbjct: 580 RGDVTRISQILNNLVGNAIKFTESGSVDIFISLDIEDENRVMFEVSDTGVGIDASEQACL 639

Query: 739 FNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ F      R +  G GLGL+I +S +    G + + S +   +     +P +
Sbjct: 640 FDAFTQTDSGRNKTGGTGLGLAISKSIMLAMNGDIGVHSEEGEGSQFWFSLPLE 693


>gi|109898421|ref|YP_661676.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700702|gb|ABG40622.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1042

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 159/400 (39%), Gaps = 35/400 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +  F N +       +           +    + +      GR+K  N A + L     
Sbjct: 349 IVLAFFNRSANKS--KQLADARAESAAIVSASKDAIISVDLTGRVKSWNNAAKGLLSLSA 406

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             +  G  +  +     R +++ +  D+F  +           Q   +  S   L  S  
Sbjct: 407 VDV-IGKTLMEL-----RVFDDIELSDIFERLSNKHRQLNIETQIESQENSPIFLALSFS 460

Query: 532 PLPNAQTMLTFVNVTDSV----------------RAERALTEKNEALRKADEIKNSFVQH 575
           P+ N++  +  + +                      E  +  +   L+KA  IK++F+ +
Sbjct: 461 PIANSEDRIEGIAIIARDVTQERIADEKIKQANAELEEKVALRTVELQKASGIKSAFISN 520

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  IIG  +L+K      L+  Q +Y+E    S   L  LVND+LDL+ ++A
Sbjct: 521 ISHEMRTPLNGIIGTLNLVKREH---LSENQQRYIEMTEVSVNTLSTLVNDVLDLSKIEA 577

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKI 694
           G + L+       +L+  +  S+A K  E  +   +        S V+D  R  QI + +
Sbjct: 578 GKLDLDIKPFNPVNLIESLCGSMAVKAQEKGLEFIIDVSALNYQSMVSDPHRFSQILTNL 637

Query: 695 LSNAMDFSSKGSTVILKA----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
           ++NA+ F+  G  + + A     +D      ++ ++G  I ++    +F+ F        
Sbjct: 638 VNNAIKFTETG-YIKVSAHTELVKDKVHLHCAIADSGEGIAKENQDKLFSAFSQADSSVA 696

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +  G GLGLSI    + L  G V+ +S     +     I
Sbjct: 697 SKHGGTGLGLSICRQLVTLLKGEVNFTSQKNQGSVFYFSI 736


>gi|295660700|ref|XP_002790906.1| two-component sensor protein histidine protein kinase
            [Paracoccidioides brasiliensis Pb01]
 gi|226281158|gb|EEH36724.1| two-component sensor protein histidine protein kinase
            [Paracoccidioides brasiliensis Pb01]
          Length = 2331

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ +VS++LR+P+  +IG T+LLK +   +L+ +Q+ YV
Sbjct: 1804 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELLKKT---NLDREQNGYV 1860

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I   +  LL L+NDILD + ++AG MK+    + L D + E  +++        ++  
Sbjct: 1861 ESIRVCADTLLTLINDILDFSKLEAGKMKVAAIPLNLRDTIMEAVRALCFTHRHRGLQTI 1920

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFS--V 723
               D    +   + D  RL QIF  +LSN+  F+ +GS V +KA     ++G    +  V
Sbjct: 1921 EDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGS-VTVKANASDEEDGRIRITCKV 1979

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  IP +    +F  F        R   G GLGLSI ++ I  + GG + + S +  
Sbjct: 1980 VDTGIGIPGEQLVRLFRPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEEGV 2039

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2040 GTTVTFTL 2047


>gi|311032689|ref|ZP_07710779.1| two component system histidine kinase [Bacillus sp. m3-13]
          Length = 933

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 147/325 (45%), Gaps = 25/325 (7%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +         +++     +  + +  +E ++    L ++++ + E S            
Sbjct: 436 EVERLLLESQAQTEELQSQSEELQAQSEELQTQSEELRMINEQLEERS---------RDA 486

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
               +D  +A+  L EK + L+ + + K+ F+ ++S+ELR+PL +I+  +++L       
Sbjct: 487 EQKSSDLQKAKTELEEKAKQLQLSSKYKSEFLANMSHELRTPLNSILLLSEMLAEDPEDQ 546

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  +Q ++   I++S   LLNL+NDILDL+ V+   +++ +  + + + +N ++      
Sbjct: 547 LTDEQREFSRVINSSGQDLLNLINDILDLSKVEVKKLEVMFGEVNVEEFINRLELQFTHI 606

Query: 662 MHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAA------ 713
                +  +++   +L      D QRL QI   +LSNA  F+ +G   V ++ A      
Sbjct: 607 AKHKKLNYEIVRGNQLPDVFFTDEQRLQQIVKNLLSNAFKFTEQGKVSVKIEKAPKRDLL 666

Query: 714 ------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
                 + +     SV++ G  I +D    +F  F         +  G GLGLSI + F 
Sbjct: 667 RANVNVKADTWLKISVEDTGIGISKDKQSLIFEAFHQGDGATMRKYGGTGLGLSISKEFS 726

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
           NL GG V + S +   +     IPS
Sbjct: 727 NLLGGSVFVESEEGEGSVFTLLIPS 751


>gi|308125497|ref|ZP_07663416.1| hybrid signal transduction histidine kinase J [Vibrio
           parahaemolyticus K5030]
 gi|308112027|gb|EFO49567.1| hybrid signal transduction histidine kinase J [Vibrio
           parahaemolyticus K5030]
          Length = 381

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 11/222 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+    G   LL  +K   L+ +Q ++VE I  SS  L+ +++DILD + V+A
Sbjct: 1   MSHEIRTPMNA-YGVASLLSDTK---LDPQQKEFVEIIDNSSQSLMTIIDDILDFSKVEA 56

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKI 694
           G ++L   T     LL++V      K  + N+++    D KL      D  RL Q+ + +
Sbjct: 57  GKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNL 116

Query: 695 LSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           LSNA+ F+ +G   +L +  +         F V ++G  I ++  ++VF RF        
Sbjct: 117 LSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTT 176

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           R   G GLGL+I    +++ GG + ++S     +  +  IP 
Sbjct: 177 RKYGGTGLGLAICAQLVHIMGGDIKLTSELGLGSCFDFTIPL 218


>gi|295109066|emb|CBL23019.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 684

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 125/262 (47%), Gaps = 10/262 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +   +        E+ L +     + A+E K  F+ ++S+++R+P+  IIGF++LL+  
Sbjct: 277 YLQFKMRRYRDALHEKELEKAVLEAKNANEAKTRFLFNMSHDIRTPMNAIIGFSELLE-- 334

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K      K   Y+  I +SS  LL+L+N +L++A +++G + L      + +L+  +   
Sbjct: 335 KHIDEKDKAIDYLGKIKSSSNFLLSLINYVLEMARIESGKLALKKEVGCVTELIESLTDV 394

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
               + +  I     +D +    + D  ++ +IF  I+ N++ ++ +G  + +    +  
Sbjct: 395 FEPGVKKKFITYSCETDIQHKYVIGDETKVREIFINIIGNSVKYTPEGGKISVSVKEEPF 454

Query: 718 D------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
           +      +   V++NG  + ++    +F  F       + +  G GLGL IV+S I++ G
Sbjct: 455 EKENYIAYRIIVEDNGIGMSKEYLPHIFEEFSREHTSTESKVTGTGLGLPIVKSLIDMMG 514

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G + + S     T +N  +P +
Sbjct: 515 GTIEVESQLGCGTNMNVVLPFE 536


>gi|89094752|ref|ZP_01167687.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92]
 gi|89081006|gb|EAR60243.1| Multi-sensor Hybrid Histidine Kinase [Oceanospirillum sp. MED92]
          Length = 881

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 144/324 (44%), Gaps = 12/324 (3%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIP 532
             G  I N     +          L      S   E +SL   +  L+  V E   ++  
Sbjct: 188 RFGQRITNPILGLTHVIEMLQHGHLETRASLSSTGELRSLAQGINRLAQRVQESNQTLES 247

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +  T      +    +  +AL +  +    A+  K+ F+  +S+ELR+PLT++ GF  
Sbjct: 248 RVDKATKRLRSTLVHLEKQNQALDKARKRANSANLAKDEFLARMSHELRTPLTSVSGFAR 307

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  ++   L + Q +Y   I+ +S +LL++++DILD + +++  ++L        + + 
Sbjct: 308 LLDQTE---LKTDQKEYTRIINLTSGLLLSIIDDILDYSKLESNAIELEEIPFDFENCIL 364

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VIL 710
           +V +      H+  + +  + + +   F V D  RL QI + ++SN++ F+S+G   + +
Sbjct: 365 DVLEMQTAAAHDKGLELVPVIESETPKFLVGDPVRLRQILTNLISNSVKFTSQGHVCIHV 424

Query: 711 ---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
              K +         V++ G+ IP+D   ++F  F         +  G GLGL I +   
Sbjct: 425 VPTKISPVESKLKIIVEDTGTGIPQDSIDNLFQAFSQADTSITRKYGGSGLGLVIAKRLT 484

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            L  G +S+ S +   T I   IP
Sbjct: 485 ELMSGEISLESKEGKGTQITLNIP 508


>gi|21225602|ref|NP_631381.1| two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
 gi|8246822|emb|CAB92873.1| putative two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
          Length = 1331

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 16/269 (5%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            AQ            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL 
Sbjct: 737  AQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLA 796

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +   +L  KQ +Y   I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+
Sbjct: 797  QNPSRNLTPKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVE 856

Query: 656  QSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +      +  +   V+ + G     + D  RL Q+   +LSNA+ F+ +G  V L    
Sbjct: 857  ATFRPMTSQKGLEFTVVTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGG-VELAVEP 915

Query: 715  DNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
               D              F VK+ G  IPE   +S+F  F         +  G GLGLSI
Sbjct: 916  APDDEVPGGVVRGGPVVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSI 975

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIP 789
                  L GG V++ S+ +  +T    +P
Sbjct: 976  TREIAQLLGGAVTVDSTPDRGSTFTLYLP 1004


>gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
 gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
          Length = 1378

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 4/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+ +A   + E L + D  K +F  ++S+E R+PLT I+G  + L+  +L   +    + 
Sbjct: 325 RSYQAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRD-RLTDADPGLREE 383

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E +  +   L  LVN +LD + ++AG M+ +Y  + L  +  E+     + + +  +  
Sbjct: 384 LEVVHRNGLRLGKLVNTLLDFSRIEAGRMQAHYEPVDLARVTGELASVFRSAVDKAGLDF 443

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +V           DR    ++   +LSNA+ F+  GS + +    + G  + +V + G  
Sbjct: 444 RVHCSPLPEPVFVDRSMWEKVVLNLLSNALKFTFDGS-IRVAVGVEEGAAVVTVDDTGIG 502

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +       +F RF    NA      G G+GL++V+  + LHGG +S +S++   T    R
Sbjct: 503 VAAKEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGEISATSAEGEGTRFTIR 562

Query: 788 IP 789
           +P
Sbjct: 563 LP 564



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 7/158 (4%)

Query: 297 KEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +   +          L  +L  A  + D++  +   N +F ++       L   P +   
Sbjct: 747 ELARLRSHHARWRTALVDSLQEAFFVCDEDGAVVEINAAFTDILGYGPEGLPYRPIHPWW 806

Query: 356 LEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-NPRGGTI 413
            +    +    +  + +     +    Y    TH+D   L    T + +      R  T+
Sbjct: 807 PDAATDSEAHQQVSDAFALLLGSTKGSYTIPITHRDGHRLWATATFNQVDDPDTGRRVTV 866

Query: 414 WMFENLTVQ---VDLETKYNTLVKVQGETIDHLSEGVA 448
             F ++T +   +  E+    L          L E +A
Sbjct: 867 GSFRDVTAEHYAIQRESALAALATCLSRA-TSLPEALA 903


>gi|332139982|ref|YP_004425720.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550004|gb|AEA96722.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 941

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 137/325 (42%), Gaps = 15/325 (4%)

Query: 477 GTHIRNIAATCSRYYNESDGWD------LFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           G  IR +    + +  E  G +      L    ++S  DE   L+  L    + +     
Sbjct: 476 GAPIRRLIRYIAAFNPEKRGGEKAPQRALHIQELSSLSDEFMHLESRLLNAFEELKSAKE 535

Query: 531 IPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +       +       ++  AE+   L +  +    A+  K  F+ ++S+E+R+P+  II
Sbjct: 536 VEQALNVELGELNQSLEARIAEKTDHLAKALKEAEAANVAKTQFLANMSHEIRTPMNGII 595

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +L+  S+   L    +   + IS S+  LL +++ ILD + +++G M+++  +  + 
Sbjct: 596 GSCELMLDSE---LPEHVAARAKVISRSAANLLMILDSILDYSKIESGKMRIDIQSCAIR 652

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST 707
           +LL    +            I +  D  +   +  D  ++ QI + +LSNA+ F+S+GS 
Sbjct: 653 ELLESSCELYRHSAKAKEYDIHLNVDSGVPKVLDIDAGKISQIINNLLSNAVKFTSEGS- 711

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           V +  +  +      V + G  I  +    +F +F        R   G GLGL I +  I
Sbjct: 712 VSVNVSYAHHALKVVVSDTGVGIAPEKLDLIFEQFEQADSTTTRHFGGTGLGLPISKGLI 771

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L  G + + S     T     IP+
Sbjct: 772 ELLDGQLFVESELGKGTRFTFHIPA 796


>gi|257877615|ref|ZP_05657268.1| histidine kinase [Enterococcus casseliflavus EC20]
 gi|257811781|gb|EEV40601.1| histidine kinase [Enterococcus casseliflavus EC20]
          Length = 573

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 86/426 (20%), Positives = 169/426 (39%), Gaps = 37/426 (8%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKY 429
           + T ++    +       K     P+ Q + +  T         +   L+ Q+      Y
Sbjct: 178 FHTLRQRNRPIQTILPVVKKMITSPDQQAIIMQETPEHDE-LYQLINQLSEQMSQTYRAY 236

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     +  L  GV +   + ++ L NP  +                   A T  +
Sbjct: 237 AASEQQLYGLLSELMIGVFIINEENQLLLLNPTMQEQLGM------------ETAPTLPQ 284

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTD 547
            + E         +I  F+DE         L  +   VL+ ++      Q +    ++T 
Sbjct: 285 PFTEVIHDTQLIQLIYQFNDETPIFHAETTLSGERSKVLDVTLRSFQENQLIGISYDLTR 344

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+              ++  FV +VS+EL++P+T++IGFT+ L         + Q+
Sbjct: 345 IRQLEK--------------MQKDFVGNVSHELKTPVTSLIGFTETLLDGAKEDPETLQT 390

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++E I   +  L NL+ DI+ L+  D+   +     I  ++LL +V Q+      +  +
Sbjct: 391 -FLEIIQKDAYRLKNLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAAKKQL 448

Query: 668 RIKVISDGKLGSFVADRQRLLQ-IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +   +G     ++ ++ LLQ I   ++ NA+ +S  G  + L  +  +   +F V++ 
Sbjct: 449 TFQF--EGPEPFILSTKKELLQPIVKNLVENAVTYSKPGGVITLSYSEQDDQLLFQVQDQ 506

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+  + +F RF            G GLGL+IV+ +  L GG + + S  +  +T 
Sbjct: 507 GIGIDEEDQERIFERFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGSTF 566

Query: 785 NCRIPS 790
              +P 
Sbjct: 567 TVTLPL 572


>gi|45655765|ref|YP_003574.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602736|gb|AAS72211.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 841

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 11/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +  +    A+++K+ F+  +S+E+R+PL  IIG   L++  K   L+  Q      
Sbjct: 455 RELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIG---LIEQFKSTPLDENQQYIRNL 511

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL ++NDILD + ++   + L        + + E       +  +  + + V 
Sbjct: 512 IQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKGLVLSVD 571

Query: 673 SDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNG 727
                +   V D++R+ Q+ S ++SNA+ F+  G  + ++A  +      ++   V ++G
Sbjct: 572 YSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSG-KIQIRAFSEKIETKIEYKIQVIDSG 630

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +    +F +F         +  G GLGL+I +  + L  G + +S +    +T  
Sbjct: 631 IGIPREKIDLLFQKFFQLDSSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFE 690

Query: 786 CR 787
             
Sbjct: 691 FT 692


>gi|291560209|emb|CBL39009.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 751

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 135/282 (47%), Gaps = 13/282 (4%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++G + +L  S  E   I   N   + T    T+  +A+RA  +  E    A + K+ F+
Sbjct: 317 IKGIVTVLRKSQSEAIEIERENNTRLETIN--TELTQAKRAAEQAFEVANNASQSKSDFL 374

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  I+G T L++         K  +YV+ I  S+  LL ++ND+LD++ +
Sbjct: 375 ASMSHDIRTPMNAIMGITSLIRHDAGNK--DKVIEYVDKIDVSAQHLLGIINDVLDMSKI 432

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           +AG    +YS   + + + E++     +  E +  + +  +  +  +V +D   L+QIFS
Sbjct: 433 EAGKTVFSYSDFSILEFMQEIQTMFCPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFS 492

Query: 693 KILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +LSNA+ ++ KG  +                + F+V +NG  + ED    +F+ F    
Sbjct: 493 NLLSNAVKYTQKGGKIQFLVEECETKSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREE 552

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                + +G GLG++I ++ I   GG + + S     +    
Sbjct: 553 SSLTNKIQGTGLGMAITKNLIEAMGGTIDVDSELGLGSCFEV 594


>gi|289620411|emb|CBI53269.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 2114

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 124/253 (49%), Gaps = 19/253 (7%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L      L++A E K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I 
Sbjct: 1413 LKLLETKLKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQ 1469

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S+  L+ ++NDILDL+ VDAG+MKLNY       L+ +V + ++T      + +  + +
Sbjct: 1470 TSANSLIMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVE 1529

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-----VIL----KAARDNGDFIFSVK 724
              + ++V  D+ R+ Q+   ++ NA+ F+++G       V++        +     FS+ 
Sbjct: 1530 EDVPAWVKGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKVVVPDDGPLHENEIMLEFSII 1589

Query: 725  NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G    ++  + +F  F     +   Q  G GLGL I    + LHGG +  ++     +
Sbjct: 1590 DTGRGFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMDGTAVPGEGS 1649

Query: 783  TINCR----IPSK 791
            T        +P++
Sbjct: 1650 TFTFTARFGLPTE 1662


>gi|209525055|ref|ZP_03273599.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
 gi|209494464|gb|EDZ94775.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
          Length = 573

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 122/260 (46%), Gaps = 24/260 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +   A   A+  K+ F+ ++S+ELR+PL  IIG++++L               +E 
Sbjct: 307 EELQKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEMLHEESKDLGYDDFLPDLER 366

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  +   LL++++DILD++ ++AG + L      +  L+++V  +      +N+  +KV 
Sbjct: 367 IQTAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTEKNHNALKVK 426

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------ 714
           +   LG+  AD  ++ Q+   +LSNA  F++KG T+ L+  R                  
Sbjct: 427 TAKDLGTMYADLPKVRQVLLNLLSNASKFTNKG-TITLQVQRVTKIPNEWKKDTLNAEKF 485

Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                   +F VK+ G  + ++  K +F  F+       +R  G GLGL+I +    + G
Sbjct: 486 ASAKTQYLVFQVKDTGIGMNKEQVKHIFKAFIQADASTTKRFGGTGLGLAISQRLCEILG 545

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S +   +T    +P
Sbjct: 546 GGIYVKSREGVGSTFVVWLP 565


>gi|254444196|ref|ZP_05057672.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198258504|gb|EDY82812.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1220

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 15/245 (6%)

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            ER L ++ E     ++ K+ F+  VS+E+R+P+  IIG TD L  +    L  +Q + ++
Sbjct: 810  ERGLKKRAERA---NQAKSEFLAMVSHEIRTPMNCIIGMTDNLLAT---PLQKEQFEMLQ 863

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             + AS   L+ +++DILD + ++AG ++L+         + +V         E NI ++ 
Sbjct: 864  AVHASGQSLVAIISDILDFSKIEAGKIELDSVPFSPEQTVKDVFNLFVRSCDEKNISLRT 923

Query: 672  ISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIF--SVKN 725
                ++    + D  RL Q+   ++ NA  F+ +G  + +   +   D+G      +V +
Sbjct: 924  DISDEVPDIAIGDPIRLKQVLINLVGNARKFTDQG-LITISLNQQINDDGSLTLIYTVTD 982

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
             G  I       +F  F        R   G GLGL+I +  +NL  G + +SS     +T
Sbjct: 983  TGIGIESANMDLLFKAFSQIDSSNTRKFGGTGLGLAICKRLVNLMNGDIGVSSQTGHGST 1042

Query: 784  INCRI 788
             +  I
Sbjct: 1043 FSFTI 1047


>gi|167768187|ref|ZP_02440240.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1]
 gi|167709711|gb|EDS20290.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1]
          Length = 762

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 135/282 (47%), Gaps = 13/282 (4%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++G + +L  S  E   I   N   + T    T+  +A+RA  +  E    A + K+ F+
Sbjct: 317 IKGIVTVLRKSQSEAIEIERENNTRLETIN--TELTQAKRAAEQAFEVANNASQSKSDFL 374

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  I+G T L++         K  +YV+ I  S+  LL ++ND+LD++ +
Sbjct: 375 ASMSHDIRTPMNAIMGITSLIRHDAGNK--DKVIEYVDKIDVSAQHLLGIINDVLDMSKI 432

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           +AG    +YS   + + + E++     +  E +  + +  +  +  +V +D   L+QIFS
Sbjct: 433 EAGKTVFSYSDFSILEFMQEIQTMFCPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFS 492

Query: 693 KILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +LSNA+ ++ KG  +                + F+V +NG  + ED    +F+ F    
Sbjct: 493 NLLSNAVKYTQKGGKIQFLVEECETKSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREE 552

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                + +G GLG++I ++ I   GG + + S     +    
Sbjct: 553 SSLTNKIQGTGLGMAITKNLIEAMGGTIDVDSELGLGSCFEV 594


>gi|158340478|ref|YP_001521472.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158310719|gb|ABW32333.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 929

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 128/256 (50%), Gaps = 22/256 (8%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E       A++ K++F+ ++S+ELR+PL  I+GF+ LL   +  +L+  Q Q +  I
Sbjct: 404 QLRESKNKAEAANQAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLS--QKQNLNSI 461

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + S + LLNL+ND+L+++ ++AG + LN +   L  LL+ +++  A K     + + +  
Sbjct: 462 NRSGSHLLNLINDVLEMSKIEAGKISLNPTNCDLLLLLDSLQEMFALKAKSKGLVLNIQK 521

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGD-------- 718
             K+      D  RL Q+   +L+NA+ F+  GS  +      +    ++          
Sbjct: 522 SSKIPLYIYIDENRLRQVLINLLTNALKFTESGSVTLRVSTQAISLPEESATHPQNDTTQ 581

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVS 773
                 F V++ G  I ED    +F+ F+  +  +  + G GLGL+I   F+NL  G + 
Sbjct: 582 PSLSLYFEVEDTGIGIAEDELDDIFDAFIQTSSGQQSQEGTGLGLAICHHFVNLMQGDIQ 641

Query: 774 ISSSDEGVTTINCRIP 789
           + S     TT+  +IP
Sbjct: 642 LQSRQGQGTTVFMQIP 657


>gi|153807836|ref|ZP_01960504.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185]
 gi|149129445|gb|EDM20659.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185]
          Length = 1348

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 123/261 (47%), Gaps = 3/261 (1%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             +II L ++               E    ++ E L K ++ K  F  ++S+E R+PLT I
Sbjct: 773  VTIIGLLSSYYKFQKSQYMLKASLELE-RKEKENLEKINQAKLQFFSNISHEFRTPLTLI 831

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            I  +++L  S++ S++   S  +  I  +S +L+NL++++LD   ++ G M+L  S   +
Sbjct: 832  ISQSEVLMKSRISSIS--LSNKILDIYRNSQLLMNLISELLDFRKLEQGQMQLKVSKQDI 889

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
               +NE+  S         I  +  S+        D ++L ++F  +LSNA  ++ K   
Sbjct: 890  VSFVNEIFLSFKEYASNKQIEYQFSSNEPKVYCWFDAKQLQKVFFNLLSNAFKYTKKNDR 949

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            VI++   ++      V + G  I  +  + +F RF   +   +    G+GL++ ++ + +
Sbjct: 950  VIVQIENESQIIKIKVIDTGIGIDREYLEHIFERFYQVSSITRTPSTGIGLALSKAIVEM 1009

Query: 768  HGGHVSISSSDEGVTTINCRI 788
            H G + + S+    +T    +
Sbjct: 1010 HHGIIEVDSTPGNGSTFIVTL 1030


>gi|237747922|ref|ZP_04578402.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379284|gb|EEO29375.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 728

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 139/341 (40%), Gaps = 16/341 (4%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           P FR    T  +       I++I          S            +D+E + L+     
Sbjct: 248 PTFRKYCDTFVHPEDRERLIQSIDPDIIARSISSQNSFYELEYRRRYDNEYQWLRLQFIP 307

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYE 579
           +       + IP                   ER AL +  +A  KA+  K+ F+  +S++
Sbjct: 308 METR----NGIPSKVILATQNIHQQKKQEALERQALRDACDAANKANAAKSRFLSCMSHD 363

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+G   +   +     N +  + +E IS SS  LL LVN+ILD++ +++G + 
Sbjct: 364 IRTPLNVILGMNQMANRNIED--NERVRKCLESISVSSRHLLTLVNEILDMSRIESGNLI 421

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
           L        +L+    + I   + + + R  + +D  +  + + D   L QI   +LSNA
Sbjct: 422 LAEQAFDFEELVKNAIEMIGPFIVQKHHRFTINTDNLVHKNVIGDAPHLQQILQNLLSNA 481

Query: 699 MDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           + ++     + L      G           + +NG  + +D+   +F+ F         +
Sbjct: 482 VKYTPSNGKIDLNIRDKIGAPTGYTTIEIRIADNGYGMSKDVQARIFDPFERGNDTRINK 541

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +G GLGL+I ++ + L  G + + S     TT    IP K
Sbjct: 542 IQGTGLGLTITQNLVQLMNGDIQLESEPGKGTTFTITIPFK 582


>gi|186686039|ref|YP_001869235.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186468491|gb|ACC84292.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 503

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 155/376 (41%), Gaps = 9/376 (2%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTH 479
           +  LE +           ++ +S+ V      G++   NPA  +L   ++     +   +
Sbjct: 122 KHQLERELRQNRDQLATLLNSISDAVIATNEQGKVTFMNPAAETLTGWQQKDALGNEAAN 181

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNA 536
           I +I    +    E+    +       + +E  SL    G    + DS       P    
Sbjct: 182 IFHIVDEATDTILENPVTKVLREQQVVYLEEFTSLIRRDGKRVPIGDSASPLKEGPDKIN 241

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             ++ F +++D  R  + L +  E  ++ + +K+ F+  VS+E R+PLT I    +L++ 
Sbjct: 242 GVVVVFWDLSDR-RQTKVLEKALEKEQELNRLKSLFISTVSHEFRNPLTVIQTAVELIEM 300

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                 + K+  Y++ I  +   +  L+ ++L +   +A  +  N + + L     E+ +
Sbjct: 301 KGGNLTDEKRGIYLKRIQGAVQSMEKLMEEVLFVGRAEAKKLVYNPAPLNLEQFCLELIK 360

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
             +  +  +   +           V D   L  +F  +LSNA+ +S +G  +      D 
Sbjct: 361 DFS-IVESSECEVVFTCHSDRTDAVMDEGLLNYMFGNLLSNAIKYSPRGGKIQFNLICDP 419

Query: 716 -NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                IF +++ G  IPE     +F  F   ++    +G GLGL IV+  ++ H G +S+
Sbjct: 420 IEKVAIFYIQDQGMGIPEADQARLFESFYRGSNVQSIKGTGLGLVIVKRCVDAHRGQISV 479

Query: 775 SSSDEGVTTINCRIPS 790
           +S     TT    +P 
Sbjct: 480 TSQIGVGTTFTVILPL 495


>gi|88801182|ref|ZP_01116725.1| GGDEF family protein [Reinekea sp. MED297]
 gi|88776085|gb|EAR07317.1| GGDEF family protein [Reinekea sp. MED297]
          Length = 773

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 11/244 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           AE ALT        A   K  F+ +VS+ELR+PL  I G  DLL  S   S +    + +
Sbjct: 390 AEEALTI----ADNAVRAKERFLANVSHELRTPLNAIQGSVDLLSHS---SQDESLKEPI 442

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHENNIRI 669
           + I  SS+ LL L+NDILDLA ++A ++ ++     L+  + ++    + +  +    R 
Sbjct: 443 DMIQHSSSFLLFLINDILDLAKLNADMLTIDEQPFNLHGSIQQICSIYSNSLANNAQTRF 502

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++     +    V D +RL Q+ + +LSNA  F+ KG        +D    + SV++ G 
Sbjct: 503 ELTISPDVPTWIVGDEKRLEQVIANLLSNAFKFTEKGKVTCRLTLKDTHTLMISVQDTGI 562

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  D   ++F  F         +  G GLGL I    I   GG +   S     +T   
Sbjct: 563 GIKPDNLDAMFAAFTQADSSISRKYGGTGLGLRISSKIIEQMGGEIWAESETGQGSTFTF 622

Query: 787 RIPS 790
            +P 
Sbjct: 623 TLPL 626


>gi|332139904|ref|YP_004425642.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549926|gb|AEA96644.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1042

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 114/258 (44%), Gaps = 11/258 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     NV         L    +   KA  +K+ F+ ++S+E+R+PL  I+GF+   K  
Sbjct: 400 TNDLRNNVELIEEQNARLDIARKDAIKASNVKSQFLANMSHEIRTPLNAILGFS---KEL 456

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL + Q + V  ++ ++  LL +VND+LD + ++AG + +N      N LL E+   
Sbjct: 457 NNASLPTDQQEQVRIVNTAADNLLTIVNDVLDFSKIEAGKLTINNQPFSPNKLLEEMVTI 516

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +A   H  ++             + D  R+ Q+ + +LSNA+ F+S G T+         
Sbjct: 517 MAKSSHSKHLEFVFDLHPLPEKLIGDVFRIKQVLNNLLSNALKFTSSG-TITFSVRGRAL 575

Query: 717 ----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
                +   ++++ G  I     K +FN F           +G GLGL I    + L  G
Sbjct: 576 PHGIHEVNMTIEDTGIGISRQDRKKLFNAFSQVDDALNRNYQGTGLGLVISRELVRLMNG 635

Query: 771 HVSISSSDEGVTTINCRI 788
            +++ S+    +T    +
Sbjct: 636 DLTLKSALGQGSTFIVSL 653


>gi|121604608|ref|YP_981937.1| signal transduction histidine kinase with CheB and CheR activity
            [Polaromonas naphthalenivorans CJ2]
 gi|120593577|gb|ABM37016.1| signal transduction histidine kinase with CheB and CheR activity
            [Polaromonas naphthalenivorans CJ2]
          Length = 1408

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 182/501 (36%), Gaps = 32/501 (6%)

Query: 306  THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                  + +  +A    D+   ++ +      L+ +  + L     N  LL+        
Sbjct: 783  NDLQNFITSTDIATIFIDRGMRIKRYTPQSASLFNLIESDL-----NRSLLDITH----- 832

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLT 420
              +L++     ++  V+ +    +      +G+     +       +   G +  F ++T
Sbjct: 833  --KLDYSALVNDVTEVFNTLNKVERQVSSSDGRHYLARIRPYRTTDDRIEGAVLTFVDVT 890

Query: 421  VQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
                 E       +      +   +  +     +G I   N     ++   E   + G  
Sbjct: 891  ALRQAEENVRAGEERLRIAAETTKDYAILTIDEEGLITTWNHGAERIFGYSEKE-AVGQL 949

Query: 480  IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
               I     R    +D     A       DER  L+        S    S +       M
Sbjct: 950  FAIIFTPEDRAAGAADEELRLAREEGRSTDERWHLRK-----DGSTFFCSGVVTRLEGKM 1004

Query: 540  LTFVNVTDSVRAERALTEKNEAL----RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +  +   +   + L    + L    ++A+E+K+ F+  +S+EL+ PL  I   T+LL 
Sbjct: 1005 GGYAKIARDITENKTLQVSRDELLAMEKRANELKDQFLAVMSHELKHPLNLIQVNTELLL 1064

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +        +  +  E I  +      +++D+LDL+    G + L  + + L++L   + 
Sbjct: 1065 SQPEVRALPEVVRAGETIRHAVVSQTKIIDDLLDLSRARTGKLTLRLAPVNLDELAEMIA 1124

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +      +  + +      K    + DR R  QIF  +++NA+ F+ +G T+ ++  RD
Sbjct: 1125 SAAREAASKKGLTLVYECSDKEVLALCDRVRTEQIFWNLINNAIKFTPEGGTITVQLERD 1184

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHV 772
                 FSV + G  I  +    +F  FV   ++       G+G+GL++V       GG V
Sbjct: 1185 AEFAKFSVTDTGQGITAEFLPQIFGMFVQAPNQKVPSTNMGLGVGLTLVRDLTVAQGGKV 1244

Query: 773  SISSSD-EGVTTINCRIPSKE 792
               S+      T +  +P  +
Sbjct: 1245 LADSAGLGKGATFSVWLPLAQ 1265


>gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
 gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
          Length = 996

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 179/478 (37%), Gaps = 53/478 (11%)

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           EL     + + +          L    +  E      W+  I +               +
Sbjct: 12  ELLGNSPSIVNSGIHPPAFWRQLWETLRQEE-----AWRGEICNRA------------LD 54

Query: 397 GQTLHVIVTSNP----RGGT---IWMFENLTVQVDLETKY---NTLVKVQGETID----- 441
           G+   V  T  P     G     I +  ++T    L+         ++   E  +     
Sbjct: 55  GRLYWVDTTIAPFKDAEGRIEKYIAIQFDITQAKTLQINLSIARNQLQRATEVAELGVWS 114

Query: 442 -HLSEGVAVFGPDGRIKLSNPAFRSLWK---TEENRLSPGTHIRNIAATCSRYYNESDGW 497
             +++G   F        + P             + L     +  +  T         G 
Sbjct: 115 WSMADGTLTFDDTMNAIYAIPPAMQDPHRLYGYWHTLIHPDDVAEVDRTLQATLRAGQGQ 174

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
                     + + + ++      S +V+EY  +       +    ++T   +AE  L  
Sbjct: 175 VCRQVFRIHVNGQERIIE------SAAVVEYQGVG-DTLMLVGINRDITRQRQAEATLQA 227

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              A   A++ K++F+ ++S+ELR+PL  I+G   LL  S    L  +Q+ Y     A++
Sbjct: 228 AKLAAENANQAKSAFLANMSHELRTPLNAILGMLALLLKS---GLTHRQADYATKSEAAA 284

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL L+NDILD + ++AG M+L      L  LL ++   +A+  H+  + +    D +L
Sbjct: 285 QALLRLLNDILDYSKIEAGKMELEAEPFNLCALLQDLAVILASNSHKKPVEVLFDIDPRL 344

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPE 732
               + D  RL Q+   +  NA+ F+ +G  V    +++    N    F V++ G  I  
Sbjct: 345 PRWLIGDSLRLQQVLINLGGNALKFTEQGEVVLFIHLIEQDAQNATLHFGVRDTGIGIAP 404

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +  + +F+ F        RR  G GLGLSI + F+ + G  + + S     +  +  +
Sbjct: 405 EKQRLIFSGFSQAEASITRRFGGTGLGLSISQRFVAMMGSTLELESEPGKGSLFHFTL 462


>gi|289767250|ref|ZP_06526628.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
 gi|289697449|gb|EFD64878.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1333

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 16/269 (5%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            AQ            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL 
Sbjct: 739  AQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLA 798

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +   +L  KQ +Y   I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+
Sbjct: 799  QNPSRNLTPKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVE 858

Query: 656  QSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +      +  +   V+ + G     + D  RL Q+   +LSNA+ F+ +G  V L    
Sbjct: 859  ATFRPMTSQKGLEFTVVTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGG-VELAVEP 917

Query: 715  DNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
               D              F VK+ G  IPE   +S+F  F         +  G GLGLSI
Sbjct: 918  APDDEVPGGVVRGGPVVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSI 977

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIP 789
                  L GG V++ S+ +  +T    +P
Sbjct: 978  TREIAQLLGGAVTVDSTPDRGSTFTLYLP 1006


>gi|285018938|ref|YP_003376649.1| two component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283474156|emb|CBA16657.1| putative two component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1188

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 8/239 (3%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
             K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ KQ  Y E I  +
Sbjct: 798  HKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLAT---PLDPKQRGYTESIRGA 854

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-G 675
             T LL LVND LDLA ++AG ++L+     L  L+ E+   +      + +   + +   
Sbjct: 855  GTHLLRLVNDALDLARIEAGRLELDQQPFDLGQLIAELAAMMEPMAQGHGLTFVLDNAMP 914

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDM 734
            +  +   D  R+ QI   +L+NA+ F+ +GS  + +   ++     F V + G  I  + 
Sbjct: 915  EQVTATGDATRVRQILLNLLNNAIKFTERGSVQLRVAPLQEFQGVRFEVVDTGPGINAEQ 974

Query: 735  CKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +F RF             G GLGL+I +      GG + + S     T     +P 
Sbjct: 975  QARLFQRFEQADGPRTAARYGGSGLGLAICQELAVAMGGRIDLQSRLGAGTRFVVDLPL 1033


>gi|270263998|ref|ZP_06192266.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
 gi|270042191|gb|EFA15287.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
          Length = 908

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     ++  Q+ Y++ 
Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTE----MSVTQTDYLQT 332

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++ND+LD + ++AG + L +    L + L+EV   +A   HE  + + + 
Sbjct: 333 IERSANNLLTIINDVLDFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLD 392

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNGDFIFSVKNNG 727
               +    + D  RL QI + +L NA+ F+  G+  + ++         +    + + G
Sbjct: 393 VHNDVPEQVIGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGLQERQVELEVQIHDTG 452

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F        RR  G GLGL I +  +   GG +   S     +T  
Sbjct: 453 IGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFW 512

Query: 786 CRI 788
             I
Sbjct: 513 FHI 515


>gi|77165180|ref|YP_343705.1| PAS sensor, signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
 gi|254434153|ref|ZP_05047661.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883494|gb|ABA58175.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
 gi|207090486|gb|EDZ67757.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 368

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 153/368 (41%), Gaps = 14/368 (3%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             +        D   + + +    GRI L N     +       L     +  +     R
Sbjct: 3   REIQLPFERLFDTAPDAMVISDHQGRIVLVNAMAERMLGYSRAELIS-QPLEILVPKQHR 61

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLT--FVNVT 546
             +       +    T    E + L    +  S    E S+ P+  + + ++T    ++T
Sbjct: 62  DGHARQRQKYYRHPRTRPMGEGRELYAVRKDGSMFSAEISLSPMEVDGRLLITSAIRDIT 121

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  + ++ L ++ + L +++     F    S++L+ PL  +  +  LL       L+S  
Sbjct: 122 ERKQIQKTLEQQTQDLMRSNAELEQFAYVASHDLQEPLRMVSSYAQLLARRYRNQLDSDA 181

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++E++   +T +  L+ND+L  +   AG     ++T   N ++ +V +S+   + E  
Sbjct: 182 DEFIEFMVDGATRMQALINDLLAYSR--AGTKNRTFATTNSNGVVRQVLESLQFVVKETQ 239

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSV 723
             + V     L   +AD  +L Q+F  ++SNA+ F  +G T+    + A  +  + IFS+
Sbjct: 240 ASLTVD---PLPLLIADEAQLAQLFQNLISNALKF--RGETIPRIHISAKEEENEIIFSI 294

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            +NG  I     + +F  F     + +  G G+GL+I +  +  HGG + + S      T
Sbjct: 295 ADNGIGIEPQYAERIFLLFQRLHSKREYPGTGIGLAICKKIVECHGGRIWVESKQGRGAT 354

Query: 784 INCRIPSK 791
               +P K
Sbjct: 355 FFFTLPFK 362



 Score = 45.7 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 42/148 (28%), Gaps = 14/148 (9%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
             +       +      A+ I D    +   N     +     A L + P    + +  R
Sbjct: 2   TREIQLPFERLFDTAPDAMVISDHQGRIVLVNAMAERMLGYSRAELISQPLEILVPKQHR 61

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRGGTIWM--- 415
             +    Q  ++  +       +     +      +G      + ++     G + +   
Sbjct: 62  DGHARQRQKYYRHPRTRPMGEGRELYAVR-----KDGSMFSAEISLSPMEVDGRLLITSA 116

Query: 416 FENLTVQVD----LETKYNTLVKVQGET 439
             ++T +      LE +   L++   E 
Sbjct: 117 IRDITERKQIQKTLEQQTQDLMRSNAEL 144


>gi|117925597|ref|YP_866214.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609353|gb|ABK44808.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 844

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 114/549 (20%), Positives = 223/549 (40%), Gaps = 27/549 (4%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID--VSKEITVNDQLTH 307
           +R+++ S       + V+  E        ++   +   +   A+D  V++ I ++ QL  
Sbjct: 115 QRLLARSISGVKKMQRVAADEERGRYLKAVISHRDDLLDNLYALDGVVARRIALDQQLAE 174

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              IL     ++A        Q   +  V L       LA   +   +   L SA +   
Sbjct: 175 KMLILQRNDESLARLLPTVKTQQTPQFQVNL-------LAFGATFHSMSAILHSAMQSDS 227

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-GGTIWMFENLTVQVDLE 426
           +   K  ++ +   ++ +  + D+ HL + Q        +    G   +F+     +D+ 
Sbjct: 228 RGRLKRLQKRVMDAHQLAHDYYDSLHLESEQLAPFFDAIHELLEGPANLFQLRLEALDVL 287

Query: 427 TKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            K   L++   +     +E VA +F       + +   R   + +E       H+R IAA
Sbjct: 288 KKQRGLLQRNKQLASQFNETVARLFD-----LVRSDVRRQTAQVKEVAKQSSQHLRGIAA 342

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                         +  ++   D    ++   L   + S +  S        +      +
Sbjct: 343 VALVAIVIGVMMVRWRLVV-PLDQLHSAIVEHLRGNTRSTVRQSGKNEIARISQGLAYFI 401

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
               + ERAL    EA  +A + K+ F+ ++S+E+R+P+  I G T L   +    LNSK
Sbjct: 402 ALIDQRERALRWAKEAAEQAAQAKSEFLANMSHEIRTPMNAITGLTGLCLKT---DLNSK 458

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q  Y+  +  ++  LL +V+DILD + V+AG + L  +   L  + + +   I+ K HE 
Sbjct: 459 QRDYLTKVEGAARSLLRIVDDILDFSKVEAGCLVLEETDFELESVFDHLSTMISQKAHEK 518

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFI 720
            + +       + +++  D  RL QI   + SNA+ F+ +G  V+  A      +     
Sbjct: 519 GLEVVYGVPRSVPTYLRGDPLRLSQILINLASNAVKFTEEGDIVVQVAVDRYLEEQVVLH 578

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           FSV+++G  + +   + +F+ F        RR  G GLGL+I +  + +  G + + SS 
Sbjct: 579 FSVRDSGMGMSQPQLERLFHSFTQADSSTTRRFGGTGLGLTISKRLVEMMQGKIWVESSL 638

Query: 779 EGVTTINCR 787
              +  +  
Sbjct: 639 GQGSAFHFT 647


>gi|308068862|ref|YP_003870467.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858141|gb|ADM69929.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 457

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 118/238 (49%), Gaps = 5/238 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+ +    L++  + ++ F  +VS+ELR+P+T + G+ ++L    +     KQ QY+  I
Sbjct: 221 AINDLAMELKRYRDTRSEFFANVSHELRTPVTYLKGYANVLANGLVDHEEEKQ-QYLHII 279

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +  +  L  ++ND+ +LA ++ G +  +  ++ +   + +    +  K  +  +++ V +
Sbjct: 280 ADEAHRLTVIINDLFELAKMEEGKIAFHLESVDVRRAVEKSANKVRIKAEQKGLQL-VSA 338

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +   + D  RL Q+   +L NA+ ++++G  + L   ++NG  +  + ++G  IP D
Sbjct: 339 LETIPRCLVDPVRLEQVLLNLLDNAIRYTTEGD-IELTLQQENGFGVIMISDSGPGIPPD 397

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F RF        R   G GLGL+IV+ ++ L GG + + S     T      P
Sbjct: 398 ELPYIFERFYRVEKSRSRELGGTGLGLAIVQKWVQLQGGMIEVESELGRGTVFRLSFP 455


>gi|240137118|ref|YP_002961587.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
 gi|240007084|gb|ACS38310.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
          Length = 786

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 175/460 (38%), Gaps = 59/460 (12%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTS-------NPRGGTIWMFENLTVQVDLETKY 429
              +   ++  H+      +G+ + +   +       +     + +  ++T Q  L    
Sbjct: 300 RHLAASHATVDHEFRIRDASGEWIWLRTRAEIVEDAVDGSRHLVGIAMDVTEQRRLAEFT 359

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
            T      + ++ +SE   ++    R+ L N  FR L         PG           R
Sbjct: 360 ATADMRLRDAVEAVSEAFVLWDASNRLVLCNSKFRDLHALASEDAVPG-----------R 408

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGT--LELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            Y+E  G      +        +    T  +EL     L+ S     +   +    ++T 
Sbjct: 409 RYDEIMGRGALPPVRRGIPGSERGPSRTFEVELTDGRWLQVSERRTKDGGYVSVGTDITS 468

Query: 548 SVRAERALTEKNEALRKA-----------------------------------DEIKNSF 572
             R +  L      L +                                    ++ K+ F
Sbjct: 469 LKRHQEQLVTSERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSEF 528

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLA 631
           + ++S+ELR+PL  I+GF +L+++   GSL + + + Y   I  S T LL++++DIL ++
Sbjct: 529 LANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHMS 588

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++A  +KL    I L   L      +A +    ++ I +   G L   +AD + L QI 
Sbjct: 589 RIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSIDLELAGTL-HVLADERALQQIL 647

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RG 749
             I+ NA+ F+ +   V L+    NG     + + G  IP+     +   F         
Sbjct: 648 LNIIQNAVKFTPERGRVALRGRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNLTR 707

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +G GLGL+I  S   LHGG + I S +   T +  R+P
Sbjct: 708 SYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLP 747


>gi|149276155|ref|ZP_01882299.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232675|gb|EDM38050.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 633

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 10/251 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             ++ +A R   +       A   K+ F+  +S+E+R+P+  ++G T LLK +    L++
Sbjct: 226 WEEAEKARREAEKAKREAEHAAGAKSIFLATMSHEIRTPMNGVMGMTSLLKNT---PLSA 282

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q+ YV  I+ SS  LL+++ND+LD + +++G M L   T  L   + +V    A K   
Sbjct: 283 EQADYVNVINTSSEALLSVINDVLDYSKIESGHMDLQERTFELKKCILDVIDLFAEKSLM 342

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDF 719
           + + ++   D  L    + D  RL Q+   +L+NA+ F++ G       +L+   +    
Sbjct: 343 SGVALRYELDPALPKYIITDDLRLRQVLINLLNNALKFTTVGHVFLKVGLLRTVENRITI 402

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F V + G  IP++    +F  F        R   G GLGL I E  ++L  G + + S 
Sbjct: 403 GFEVHDTGIGIPKNKISHLFKAFSQLDSTSHRKFGGSGLGLIISEKLVSLMNGSIEVKSK 462

Query: 778 DEGVTTINCRI 788
           +   +  +  I
Sbjct: 463 EGKGSIFSFTI 473


>gi|270262775|ref|ZP_06191046.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043459|gb|EFA16552.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 956

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 161/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN     L     N L+     R     
Sbjct: 353 RLEEHEQFNRKIVASAPVGILILRISDGTNILSN----ELAHNYINLLTHEDRDRITRII 408

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C +  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 409 CEQQVN-------FVDVLTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 449

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    +L    
Sbjct: 450 ARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---ALPQGV 506

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+        +++  +  +    + +  
Sbjct: 507 DRLVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLVVKKR 566

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +      D  RL Q+ S +L+NA+ F+  G  +IL+    +    FSV++
Sbjct: 567 LGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTG-CIILQVCTRSSYLEFSVRD 625

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPE     +F+ F       QR  +G GLGL+I E  IN+  G +++ S     + 
Sbjct: 626 TGVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSL 685

Query: 784 INCRIPS 790
              RIP 
Sbjct: 686 FTIRIPL 692


>gi|167769698|ref|ZP_02441751.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM
           17241]
 gi|167668059|gb|EDS12189.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM
           17241]
          Length = 469

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 2/250 (0%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  N  +       +    E L   D +KN F+  VS+ELR+PLT I G+ + L      
Sbjct: 219 TKKNDDEIGELCDTINYMAEELSANDRMKNDFISSVSHELRTPLTAIKGWAETLADMGGE 278

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                 ++ +  I++ +  L  +V ++LD + + +G MKL    + +   L+E       
Sbjct: 279 VDPEMLAKGMRVITSETERLAGMVEELLDFSRIQSGRMKLVKDRMDVIAELSEAVLMFEE 338

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +      R+      +  SF+ DR RL Q+F  I+ NA+ +S +G TV ++A+       
Sbjct: 339 RARHEGKRLIYNEPDQFASFMGDRNRLRQVFVNIIDNALKYSDRGDTVTVRASVSESQVD 398

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            SV + G  I E+    +  +F        RRG G+GL++ +  ++LHGG + I+S +  
Sbjct: 399 ISVADTGIGIREEDLPKIKEKFFKA--NSTRRGSGIGLAVADEIVSLHGGTLDITSKENV 456

Query: 781 VTTINCRIPS 790
            T +   +P 
Sbjct: 457 GTRVTIHLPL 466


>gi|325959358|ref|YP_004290824.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330790|gb|ADZ09852.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 707

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/554 (16%), Positives = 198/554 (35%), Gaps = 69/554 (12%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTV----------AIAIFDQNRYLQFHNRSFVELWEID 342
           +D  ++I   D L    E    L             +  ++ +  +   N  F+E+    
Sbjct: 155 LDDLEKIDSFDALKSYDERFKRLYESGLFYESGLFGVIYWNMDHKIVDANDKFLEMVGYT 214

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              L     N    E   +  +  ++ + K     + S   +    +  +   +G  + +
Sbjct: 215 RKDLEDG--NLNWFEMTPAEYRYTDENSIK----ELRSFGANQTPFEKVYTRKDGTQMPI 268

Query: 403 IVT-SNPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIK 457
           I+  +         + +  ++T + D+E             ++     +     +G   K
Sbjct: 269 IIACAMLDEACYNGVALILDITKRKDMEKALKKSEMEYKHLVNCAPTAIFEIDFEGPSFK 328

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAIITSFDD--- 509
             N AF +L    +  +     +  +       + E       G  +   I   F D   
Sbjct: 329 NVNEAFCNLLSCSKKDILSKNPLDILDKKSRADFKEKISLAKAGEKIDEDIEYQFVDSKG 388

Query: 510 -----------------------------ERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                                        ERK ++   + L D   + +     + + ++
Sbjct: 389 RLIWVLLNIKLIYSADKLDGALLVGHNITERKQVENLKQKLFDQEKKLTEKLQASNEMLI 448

Query: 541 TFVN-----VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  N       + V A+  L      L  +++    F    S++L+ PL  +  FT LL+
Sbjct: 449 STTNKLQLTNEELVTAQTNLKNLVNQLMISNKELEQFAYVASHDLQEPLRMVSSFTQLLE 508

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G L+    +Y+++I   +  + NL++D+L  + ++    K  +  I LND LN V+
Sbjct: 509 RRYKGKLDDNADEYIDFIVEGAQRMKNLIDDLLSYSRLNNRTAK--FQWIDLNDCLNVVQ 566

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
             + + ++E+N  I+      L     D  ++ Q+   ++ NA+ F  +    + +   +
Sbjct: 567 LDLKSSINESNATIQYD---NLPEIKGDPMQIKQLLQNLIGNAIKFQGQDHVKINITCQK 623

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +  ++ +V +NG  I       +F+ F     R +  G G+GLSI +  I  H G++ +
Sbjct: 624 FDDHWLITVGDNGIGIDPKYHDQIFDIFKRLHTRKEYEGTGMGLSICKRIIERHNGNIWV 683

Query: 775 SSSDEGVTTINCRI 788
            S      T    I
Sbjct: 684 ESELGKGATFCFTI 697


>gi|325109506|ref|YP_004270574.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
 gi|324969774|gb|ADY60552.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
          Length = 566

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 156/380 (41%), Gaps = 24/380 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              E+             ++   G+A+          NPA   L + ++  +     +  
Sbjct: 46  RQAESARRESETRFKSVFENAYNGIAILDAAHCFMEVNPAVSRLLQRQDTEIVGRPLLEF 105

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTM 539
           +A          +  +   A +   ++          + +D     LE+++      Q +
Sbjct: 106 VA---------PEYREPVTAYLKQLENAGAWRGNFPLMAADGHAIYLEWNMSSHIPGQWL 156

Query: 540 LTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               +V++ +R +       E+ R       +A+++K+ F+  +S+ELR+PL+NI+G++ 
Sbjct: 157 TIVSDVSEQIRYQEERELLLESERTARSESERANQLKDEFLATLSHELRTPLSNIVGWSR 216

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL    L   +    + ++ I ++  IL  ++ D+LD+A + +G ++L+  ++   + L 
Sbjct: 217 LLNMGGLD--DESIREGLDTIESNGNILSQMITDLLDVARIASGKIRLDTVSLNPVETLE 274

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              +++        + +    D   G    D  RL Q+F  +L+NA+ F+     + +  
Sbjct: 275 AAIRAVKPSADAKQLGVVTTVDRNAGLIEGDASRLQQVFWNLLTNAIKFTPAEGQIDVVM 334

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
            +       S+ + G  +  +    +F RF        R   G+GLGL+I +  ++LHGG
Sbjct: 335 QKVGSTIQISIADTGKGMTPETLNIIFERFRQADGTTTREHGGLGLGLAITKQLVDLHGG 394

Query: 771 HVSISSSD-EGVTTINCRIP 789
            +S  S+            P
Sbjct: 395 TISAESAGLGQGAKFILSFP 414



 Score = 39.9 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 20/143 (13%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
                   E    +  T    +  N    IAI D        N +   L +     +   
Sbjct: 41  AFLRARQAESARRESETRFKSVFENAYNGIAILDAAHCFMEVNPAVSRLLQRQDTEIVGR 100

Query: 350 PSNDELLEFLRSANKLP------EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
           P    LLEF+    + P      +  N   W+ N   +          W++         
Sbjct: 101 P----LLEFVAPEYREPVTAYLKQLENAGAWRGNFPLMAADGHAIYLEWNM--------- 147

Query: 404 VTSNPRGGTIWMFENLTVQVDLE 426
            +S+  G  + +  +++ Q+  +
Sbjct: 148 -SSHIPGQWLTIVSDVSEQIRYQ 169


>gi|300864857|ref|ZP_07109705.1| multi-sensor signal transduction histidine kinase [Oscillatoria sp.
           PCC 6506]
 gi|300337150|emb|CBN54855.1| multi-sensor signal transduction histidine kinase [Oscillatoria sp.
           PCC 6506]
          Length = 702

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 166/445 (37%), Gaps = 67/445 (15%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHL----SEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  +++  E +    +  +   ++ L    ++G  +   +  I L NP  R
Sbjct: 253 GELICSFNEMAEKLESYEEQNIEELTAEKAKLETLVSTIADGAVLLDANLYIILVNPTAR 312

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNES---------DGWDLFAAIITSFDDERKSLQ 515
            ++  E   +     +  + A                  +G +   ++    +   + L 
Sbjct: 313 RIFGWEYKNVIGENVLNYLPAEVQLEVARPLYQIAGGDREGGEFRCSLTEPINRTVRILV 372

Query: 516 GTLEL-------------LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            T+ L             L +     +  P P+A     +     S   E          
Sbjct: 373 TTVTLHKAPGSEPLCKSCLHEERNTCTEAPRPDAFECSLYFESAKSHLPEEYRDNLKGIA 432

Query: 563 R---------KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                     + +E K+ F+ +VS+ELR+PL NI  F + L         +++ +++E  
Sbjct: 433 MTIQDITREVELNEAKSQFISNVSHELRTPLFNIKSFIETLHEYGEDLSEAERREFLETA 492

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +  +  L  LVND+LDL+ +++  +  ++  + +   + +  ++      +  I +    
Sbjct: 493 NHETDRLTRLVNDVLDLSRLESCRI-YHFDGVDIAQAVEQTLRTYQLNAKDKGIELIQEL 551

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------------- 718
           D  L + +     LLQ+F+ ++ NA+ F+  G  + ++A++ + +               
Sbjct: 552 DPDLPAVLGHYDLLLQVFANLVGNALKFTHSGGKIAIRASQLDVEVREDKYEVANEESSP 611

Query: 719 --------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVES 763
                             + + G  I  +  +++F+RF    +R     G GLGLSIV +
Sbjct: 612 GNYSLSHAVPPSKLVRIEISDTGIGIDAEDQEAIFDRFFRVENRVHTLEGTGLGLSIVRN 671

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            I+ H   V + S     TT    +
Sbjct: 672 IIDKHHTKVHLVSEVGVGTTFWFDL 696


>gi|304320167|ref|YP_003853810.1| Signal transduction histidine kinase [Parvularcula bermudensis
           HTCC2503]
 gi|303299070|gb|ADM08669.1| Signal transduction histidine kinase [Parvularcula bermudensis
           HTCC2503]
          Length = 651

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 148/366 (40%), Gaps = 31/366 (8%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           ++     +D ++    +   +G I+  N     +      ++                + 
Sbjct: 1   MRSALAVLDRITLFAVLTDRNGVIRFRNKVSAGIGGLRTGQI----------------FT 44

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           E         I T+  D+ +     +    + ++E++     + +T+    +VT   +  
Sbjct: 45  EEQLPPTIRCIRTT--DQDRFTTSVIVNNDNRLIEWNPSRFTDGETLYLGTDVTRDRKNY 102

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             + E     R   E K  ++  +S+E+R+PL  I+G   LL  S    L+  Q  Y E 
Sbjct: 103 AVMRELARTARAVSEEKMRYLATMSHEMRTPLNGILGMNGLLLDS---PLDVNQRAYAEA 159

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  + T LL L+ND+LD + + AG + L         LL EV + +A +  E  I I ++
Sbjct: 160 VQQAGTALLTLINDVLDYSKIQAGHLDLEEKPFSPGALLKEVAEILAIRADEKGIDIALL 219

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI------FS 722
               +    V D  RL Q+   + +N + F+++G     ++      + D I      F 
Sbjct: 220 LHPDIPEELVGDPARLRQVLVNLATNGVKFTTEGGVSLEILPGTGSTDDDLIDHRRYSFR 279

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G  I  D    +F  F   +      G GLGL+I    +N  GG++ ++S+    +
Sbjct: 280 VRDTGKGIAADNLDRLFEEFDQGSDPSAEEGTGLGLTIARQLVNAMGGNIDVTSALGKGS 339

Query: 783 TINCRI 788
           T    I
Sbjct: 340 TFEFDI 345


>gi|302548928|ref|ZP_07301270.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302466546|gb|EFL29639.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1440

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 17/253 (6%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L EK   L  A + K+ F+ ++S+ELR+PL +++    LL  +  G L  ++ Q+   I
Sbjct: 938  ELEEKAALLATASQYKSEFLANMSHELRTPLNSLLILARLLADNPDGHLTDQEVQFATTI 997

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S + LL L++DILDL+ ++AG M +   T+ L  LL+ V  +      +  +  ++  
Sbjct: 998  HRSGSDLLQLISDILDLSKIEAGRMDVRPKTLPLIKLLDYVHATFRPLTIDRGLGFEIAV 1057

Query: 674  DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------F 719
            +  +     +D QRL Q+   +LSNA+ F+  GS V L+  R  G               
Sbjct: 1058 EKDVPAELYSDEQRLQQVLRNLLSNAVKFTHDGS-VELRVNRVAGMQFAEETLRNADHVI 1116

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
             FSV++ G  I  +    +F  F  +     R   G GLGLSI      + GG +   S 
Sbjct: 1117 AFSVRDTGIGIAPEKLPMIFEAFQQSEGTTNRKYGGTGLGLSISREIAGMLGGKIVAESE 1176

Query: 778  DEGVTTINCRIPS 790
                +     IP+
Sbjct: 1177 PGVGSRFTLYIPA 1189


>gi|296129123|ref|YP_003636373.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
 gi|296020938|gb|ADG74174.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
          Length = 589

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 162/378 (42%), Gaps = 11/378 (2%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           T      T      +     ID  +E  +      GRI++ N     L    +  +    
Sbjct: 214 TELERAVTVRRAAYEQLVSVIDSATEQAIIATDATGRIEVFNAGAERLLGYSQGAVVGRL 273

Query: 479 HIRNI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            + ++  A        ES G DL  A++ +    R+   G     +    + S + +  A
Sbjct: 274 RLVDLHLADEVLARTGESPGADLQDALVDALVAPRRGPAGAATDWTYVRADGSHVTVHPA 333

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T  T  + + +     A     E   +A  +K+ FV  VS+ELR+PLT+++G+ +LL  
Sbjct: 334 VTRRTEPDGSVAGYVVVATDVTAER--EAARLKDQFVGLVSHELRTPLTSVLGYVELLLD 391

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L  +Q +Y+  I  ++   L LV+D+L  A VDAG   ++ + +    +      
Sbjct: 392 G-TEELTDEQREYLGIIDRNARRQLRLVSDLLLSAQVDAGTFAISPTDVDAAVVARASLA 450

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-D 715
           S A       + +    D +     AD  RL Q    ++SNA+ F+  G TV +     D
Sbjct: 451 SAAPAADAAGVTLA--GDLRPAPLRADPVRLGQAIDNLVSNALKFTPTGGTVRVSVEPGD 508

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
           +G  + +V + G  IP D   ++  RF   +   +R   GVGLGLSI  + +  HGG V 
Sbjct: 509 DGGAVVAVSDTGIGIPPDELANLTERFYRASTATRRAIPGVGLGLSITRAVVEAHGGTVR 568

Query: 774 ISSSDEGVTTINCRIPSK 791
           I+S+    TT    +P++
Sbjct: 569 IASTVGEGTTFTLVLPAR 586


>gi|256392512|ref|YP_003114076.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
 gi|256358738|gb|ACU72235.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
          Length = 1482

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 127/262 (48%), Gaps = 7/262 (2%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q     +  T+  +A   L ++ + L  A ++K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 924  QNKDIEIKNTEIEQARLTLEDRAQQLALASKVKSEFMANMSHELRTPLNSMLILARLLAD 983

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L  +Q  + + I ++ + LL L+NDILDL+ ++AG M++   +  + DL   +  
Sbjct: 984  NVDTNLTPRQVDFAQTIHSAGSDLLELINDILDLSKIEAGRMEVQNESWPIADLAEGLAA 1043

Query: 657  SIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +      E  +R++V  + G   +  AD QR+ QI   +LSNA+ F+  G   +   A  
Sbjct: 1044 TFQPLAAEKGLRLRVDVTAGAPATVTADSQRVQQILRNLLSNAVKFTDTGEVTLRVTAAR 1103

Query: 716  NGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
                     F+V + G  I ED  + +F  F         Q  G GLGLSI      L  
Sbjct: 1104 GAHGEPAIAFAVVDTGIGIAEDKLELIFEAFQQADGTTSRQYGGTGLGLSISRELTRLLS 1163

Query: 770  GHVSISSSDEGVTTINCRIPSK 791
              + +SS+    +T   ++P +
Sbjct: 1164 AELRVSSAPGRGSTFTLQLPIE 1185


>gi|71905882|ref|YP_283469.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71845503|gb|AAZ44999.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 1005

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 145/353 (41%), Gaps = 34/353 (9%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +AV  P  R+ +   A   L +   +   P T    I      + +      +  + +  
Sbjct: 169 LAVIRPTHRLAI---AAHELAQGHFDTPLPHTSHDEIGNLVDSFASMRSELQVSRSELLL 225

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
             DERK     L+   + + +                         R L    +A   A 
Sbjct: 226 EIDERKKAANALQEHQEQLEQI-------------------VSERTRELVIAKDAAESAS 266

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K++F+ ++S+E+R+P+  I+G T LL+     +   K +++++ I+ ++  LL+++ND
Sbjct: 267 RTKSAFLANMSHEIRTPMNAIVGLTHLLRR---DTTTPKDAKHLDKINLAAQHLLSIIND 323

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQ 685
           ILD + ++A  + ++ +      +  ++   I  +  +  + +    D ++ + V  D  
Sbjct: 324 ILDFSKIEADKLIIDEADFEFEQIFQQLNTLITPQAMDKGLEVVDRIDPEIPAVVHGDAM 383

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFN 740
           RL QI +   SNA+ F+  GS ++ +A             F + + G  +  +    +F 
Sbjct: 384 RLGQILANFASNAVKFTEHGS-IVFRARLLEQIGNLLRIRFEITDTGIGLAPEQRDRLFL 442

Query: 741 RFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F        R   G GLGL+I +    L  G + + S+    +T  C +P +
Sbjct: 443 PFEQADTSTTRKFGGTGLGLAISKRLTELMNGRIGVDSTPGQGSTFWCELPLQ 495


>gi|328474775|gb|EGF45580.1| hypothetical protein VP10329_18770 [Vibrio parahaemolyticus 10329]
          Length = 566

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 143/318 (44%), Gaps = 8/318 (2%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            H  ++     +       W   A  +    DER   +    +  + + +  I       
Sbjct: 115 HHFGHLDLKSDKPIARIPNWQNEALHLPIIIDERVVGELIFSVSLEQIEQAFISKQMELV 174

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           + L    ++  +  ER +    +   ++++    FV  +++ELR+PL  ++G  +LL  +
Sbjct: 175 SDLVHGVISRHLSLEREVE-LRKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKT 233

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +LG     Q QY+  +  S  +L  ++ND+LD + ++AG+M++       +DL   +   
Sbjct: 234 QLG---EDQRQYLGNLIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGV 290

Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            A K  E  I   +     +  F + D +R+ QI   ++ NA+ F+  G  V L+    N
Sbjct: 291 FAAKAAEKRIHFSIDKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGGVV-LRVEWVN 349

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S 
Sbjct: 350 GTAFFEVEDTGIGIPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISF 409

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   TT    IP KE
Sbjct: 410 ESEERKGTTFKVSIPLKE 427


>gi|209966483|ref|YP_002299398.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum
           centenum SW]
 gi|209959949|gb|ACJ00586.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum
           centenum SW]
          Length = 883

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 6/259 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            A  + T +    S    R L    E    L  ++E K+ F+ ++S+ELR+PL  IIGF+
Sbjct: 624 WADEIATSLRHAISDMMLRHLRHVKELSDQLAASNEAKSRFLANMSHELRTPLNAIIGFS 683

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DL+ +   G+L  +   YV+ I AS   LL +VND+LDL+ ++AG M+L+  ++    L 
Sbjct: 684 DLMMSGMAGTLPPRIQDYVQSIHASGEHLLRMVNDVLDLSRIEAGRMELSPESLDAGILA 743

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            E    +  +     + ++V ++  L    AD  RL QI   I+ NA+ F+  G  V ++
Sbjct: 744 AECVGMLLPRAVRGEVLLEVQAESPLP-LTADALRLRQILLNIIGNAVKFTPPGGRVDVR 802

Query: 712 AAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHG 769
           A     G  +F+V++ G  +  +   +    F   A       G GLGL I +S ++LH 
Sbjct: 803 ARALAGGGAVFTVRDTGPGMTPEEVLTAMEPFRQVAQTRAAVEGTGLGLPIAKSLVDLHA 862

Query: 770 GHVSISSSDEGVTTINCRI 788
           G+++I ++    TT+   I
Sbjct: 863 GNLAIETAPGLGTTVTIEI 881


>gi|158333425|ref|YP_001514597.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158303666|gb|ABW25283.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 905

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 10/251 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L+   E    A+  K  F+ ++S+ELR+PL  I+GF+ LL++   G+L      +
Sbjct: 413 QRTEELSAAKEKAEIANHAKTEFLANMSHELRTPLNAILGFSQLLQSE--GNLTEAHHSH 470

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I+ S   LL L+ND+L+L+ ++AG   +N S++ L +LL  ++  +  K +  +I +
Sbjct: 471 VGIINRSGEHLLTLINDVLELSKIEAGQTVVNVSSLDLIELLETLQSMMQLKANAKSIHL 530

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNG--DFIFS 722
               +  +  F+  D  +L QI   +L NA+ F+ +G        L+     G     F+
Sbjct: 531 STTYNPDIPHFIETDTIKLRQILINLLGNAIKFTKQGQVNLNVRTLETPNTEGLICLQFT 590

Query: 723 VKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           V + G  I     +++F  FV     +  + G GLGL I   F  L GG +++ S+    
Sbjct: 591 VSDTGPGIDSSGLEAIFTPFVQTRTGQQSQEGTGLGLPISRKFARLLGGDITVDSTPNEG 650

Query: 782 TTINCRIPSKE 792
           +  +C I +K+
Sbjct: 651 SAFHCTIQAKQ 661


>gi|310790716|gb|EFQ26249.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1303

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 156/386 (40%), Gaps = 34/386 (8%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ ++++E      ++V  ETI+++ +           +LSN  F +  +     +   
Sbjct: 582 DMSQKIEVEA--QGEIRVLKETINNMVD-----------RLSN--FCNEVQRVARDVGVD 626

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPL 533
             +   A          +       + ++   + ++      L +D     ++E      
Sbjct: 627 GKMGAQADPAGLKGRWREITTDVNTMASNLTTQVRAFSDITNLATDGDFTKLVEVEASGE 686

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +         V++   + +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L
Sbjct: 687 MDELKRKINQMVSNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQL 746

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
              +    L   Q + +  +++ +  LL +++DILDL+ ++A  M +      L   +  
Sbjct: 747 TLDT---DLTQYQREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFN 803

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST----- 707
             +++A K +E  + +    D  +    + D  RL QI   ++ NA+ F+  G       
Sbjct: 804 ALKTLAVKANEKYLDLTYRVDSSVPDHVIGDSFRLRQIILNLVGNAIKFTEHGEVSLTIK 863

Query: 708 ----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
               V+     D     F V + G  I  D    +F+ F        R   G GLGLSI 
Sbjct: 864 KADPVVWACNPDQYAIEFIVTDTGIGIAADKLDLIFDTFQQADGSMTRKFGGTGLGLSIS 923

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
           +  + L GG + + S     +  +  
Sbjct: 924 KRLVKLMGGDLWVKSQHGQGSEFHFT 949


>gi|300786407|ref|YP_003766698.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299795921|gb|ADJ46296.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1516

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/359 (23%), Positives = 155/359 (43%), Gaps = 24/359 (6%)

Query: 446  GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            GV          L + AF  L          G ++ +I A  +R            A + 
Sbjct: 846  GVIELASVHGFTLVHRAFLELLME-----QIGVNVNSIVA-NARTDELLGESQRLTAELQ 899

Query: 506  SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            +  +E ++ Q  L+  +  + E + + +   Q         +  +A + L  + + L  A
Sbjct: 900  ARSEELQARQEELQSSNAELEEKAALLV--TQNRDIETKNLEIEQARQELEARAQQLTLA 957

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             + K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y   I ++ + LL L+N
Sbjct: 958  SKYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTAKQVEYAGIIHSAGSDLLQLIN 1017

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684
            DILDL+ V+AG M +    + L  L++ V+ +      + N+  ++ ++ G     + D 
Sbjct: 1018 DILDLSKVEAGKMDVTPEQVSLRQLIDYVEATFRPMTSQRNLDFRITVAPGSPIELLTDD 1077

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPE 732
             RL Q+   +LSNA+ F+  G  + L     + +              F V + G  I E
Sbjct: 1078 SRLRQVLRNLLSNAVKFTEVGG-IELHIEPVDPERLPRPLRVHGPAVAFRVTDTGIGIAE 1136

Query: 733  DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +S+F  F         +  G GLGLSI      L GG ++  S+    +T    +P
Sbjct: 1137 HQLESIFGAFQQADGTTSRKYGGTGLGLSISREIAQLLGGVITAQSTLGEGSTFVFALP 1195


>gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 511

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 162/396 (40%), Gaps = 55/396 (13%)

Query: 421 VQVDLETKYNT-LVKVQGETIDHLSEGVAV-FGPDGRIKLSNPAFRSLWKT--------E 470
            ++  E        +   +        +A+    + R    NP+F  +            
Sbjct: 142 ERLQQEIHDRAKAEEKFAKVFRSSPNPIAIATVSNARFIDVNPSFLKMSGYSLDEVIGNT 201

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L+ G +   IA T          ++L       F+   K  +    L+S  +++ + 
Sbjct: 202 ATELNLGKNTVAIAQTIQLLPETGSLYNL------EFEFSTKCAELKTVLISLELIDLAG 255

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +P      +L   ++T+  R E                 N F+  VS+ELR+PLT+ +G 
Sbjct: 256 VP----CALLIANDITERKRLE-----------------NEFISLVSHELRTPLTSTMGA 294

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            DLL + +LG+LN +  + +   + ++  L+ LVNDILDL  + +G +          DL
Sbjct: 295 LDLLGSEQLGTLNEQGQKVLSIATTNTERLIRLVNDILDLERMKSGKIFTRKMKYNAADL 354

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L    +++     +  +++K+I +       AD  RLLQ  + +LSNA+ FS  G TV +
Sbjct: 355 LTTATEAMQAMADQ--LQVKLIINPVEVELWADPDRLLQTLTNLLSNAIKFSEPGDTVYI 412

Query: 711 KAARDNGD--------------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGV 754
            A                     + ++K+ G  IPED  + +F RF  V  +    + G 
Sbjct: 413 SATLSESQGVEPKENEPLLPKYLLITIKDQGRGIPEDKLQIIFERFQQVDASDSRNKGGT 472

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+I    I  H G + + S+    +T    +P 
Sbjct: 473 GLGLAICRDIIQQHDGKIWVQSTLGEGSTFYVLLPL 508


>gi|315180030|gb|ADT86944.1| para-aminobenzoate synthase [Vibrio furnissii NCTC 11218]
          Length = 568

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 118/235 (50%), Gaps = 7/235 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +   ++++    FV  +++ELR+PL  ++G  +LL  +   SL+ +Q  Y+  +  S  +
Sbjct: 196 KRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDT---SLDPEQLSYLTNLQHSGDM 252

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  ++ND+LD + ++AG+M+L  +     DL + +    + K  E  I   V + G+  +
Sbjct: 253 LRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKAREKKIEFVVNTRGEFPT 312

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
            ++ D +R+ QI   ++ NA+ F+ +G+ V + A   +   +  + + G  IP     ++
Sbjct: 313 YWIGDVERINQILVNLVGNAIKFTHRGA-VTVAARWVDERLLLRISDTGIGIPLAAHDTL 371

Query: 739 FNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ F         Q  G GLGL+I ++ + L  G +  SS +   T     IP +
Sbjct: 372 FDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGEGTEFFVSIPLQ 426


>gi|88798399|ref|ZP_01113984.1| Signal transduction histidine kinase [Reinekea sp. MED297]
 gi|88778839|gb|EAR10029.1| Signal transduction histidine kinase [Reinekea sp. MED297]
          Length = 589

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 114/240 (47%), Gaps = 10/240 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               +  ++A + K+ F+  +S+ELR+PL  IIG   L++             ++  ++ 
Sbjct: 211 RRLADRAQQASKAKSEFLATMSHELRTPLNGIIGSVQLMQHEAEQPSP-----WLNSLAV 265

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL  +ND+LD +++++G + +  +   L  ++ +++     +  +  + ++V+   
Sbjct: 266 SSEALLTQINDVLDFSSIESGQISIEPAPCDLIQMIRDIEAVFYPQSVDAELLLRVLLPD 325

Query: 676 K---LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                   +AD  ++ QI   +LSNA  F+  G  V+    +++G F + V + G  IP 
Sbjct: 326 TWSSHCWVMADGHKIRQILLNLLSNAFKFTEHGQIVLAVQKQEDGQFQWRVSDTGIGIPA 385

Query: 733 DMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           D  +++F  F       + Q  G GLGL+I      L GG ++++S     T     +P 
Sbjct: 386 DKLEAIFQSFQQAESDTQRQYGGSGLGLAISRRLAELMGGSLTVTSKPGQGTDFTLTLPL 445


>gi|163795844|ref|ZP_02189808.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199]
 gi|159178877|gb|EDP63413.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199]
          Length = 700

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 138/316 (43%), Gaps = 13/316 (4%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +    + +   S   DL  ++   F   R      +E+ S+      + P+      +
Sbjct: 378 ERVGLNAAEHEASSAMQDLIVSMEDHFRSGRMDDPIPVEIGSE------VEPVARQYNRV 431

Query: 541 TFVNVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                 D+ R E+   AL         A+  K++F+ ++S+ELR+PL  +IGF+DLL   
Sbjct: 432 VARVREDTRRMEQSVEALASAKSEAEAANRAKSAFLANMSHELRTPLNAVIGFSDLLGNE 491

Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G L + +   Y E I  +   LL LVND+LD + ++AG ++L+   + +  ++  V +
Sbjct: 492 PFGKLGDDRYKTYAEDIRMAGEHLLTLVNDLLDHSRIEAGKVELHEIDVDVRAVVRRVGR 551

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
            +        + + +  D  L    AD + + Q+   ++SNA+ F+  G  V +    + 
Sbjct: 552 MMEDLAKNRGLTLDLHIDADLPRLHADERLVRQVLLNLVSNAVKFTQSGGRVEVVGRLEP 611

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
           +      V + G  +           FV    R      G GLGL +V S + LHGG ++
Sbjct: 612 DDRIALVVADTGIGMDRGDIARAMEPFVQLNDRYDKSYGGTGLGLPLVNSMVRLHGGTLT 671

Query: 774 ISSSDEGVTTINCRIP 789
           + S     TT++ R P
Sbjct: 672 VDSMKGHGTTVSVRFP 687


>gi|153955165|ref|YP_001395930.1| two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219855600|ref|YP_002472722.1| hypothetical protein CKR_2257 [Clostridium kluyveri NBRC 12016]
 gi|146348023|gb|EDK34559.1| Two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569324|dbj|BAH07308.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 351

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 133/297 (44%), Gaps = 7/297 (2%)

Query: 496 GWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           GW+++  +   F  +++    +  ++LS ++   + +   +    +    +         
Sbjct: 58  GWEIYLELHWRFTRKKRKFDLSRSQVLSGAIEAINKMASGDFNVFVKTNELDPFNEVADE 117

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    + L   ++++  F+  VS+E++SPLT+I GF  LL+   L    S+ S+Y   I 
Sbjct: 118 VNRMAKELGSLEKMRQGFISDVSHEIQSPLTSISGFAALLRKGNLS--ESQISRYANIIE 175

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A S  L  L  ++L L+ +++    LN     ++  +  +   +  +    +I + V  D
Sbjct: 176 AESKRLSKLSENLLRLSNLESENHNLNLKNYQIDKQIESILLMLEPQWSAKSITLDVSLD 235

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +     D   L Q+F  +L NA+ F+S+   + +K + +  +    + + G  I    
Sbjct: 236 KTI--VCGDEDLLSQVFINLLHNAIKFTSENGNIGVKLSSNENEIECKISDTGRGISPQD 293

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F RF        R   G GLGLSIV+  ++LHGG +S++S     T     +P
Sbjct: 294 QPRIFERFYKADKSRDRSLGGNGLGLSIVKKIVDLHGGKISLTSEIGKGTEFTIFLP 350


>gi|59714199|ref|YP_206974.1| two component sensory histidine kinase [Vibrio fischeri ES114]
 gi|59482447|gb|AAW88086.1| two component sensory histidine kinase [Vibrio fischeri ES114]
          Length = 864

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 123/249 (49%), Gaps = 12/249 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L  + E    A++ K +F+ ++S+E+R+PL  IIG + +L  +KL  +   Q 
Sbjct: 336 RHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKLTPI---QL 392

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  I  SS  LL L+NDILDL+ ++AG   +      + +++ +       K  E N+
Sbjct: 393 DYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSIDIAKATEKNL 452

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIF 721
            + +     + +F+  D  R+ QI   + SNAM F+ KG  + +         + G    
Sbjct: 453 DLHIHISPDVPNFLTLDEHRVKQILMNLTSNAMKFTHKG-FISISVNFSHRVENEGYLTI 511

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +VK++G  I  +  +++ N F+       RR  G GLGL+I    I L GG + I S  E
Sbjct: 512 AVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGGTLDIESEQE 571

Query: 780 GVTTINCRI 788
             +  + RI
Sbjct: 572 KGSRFSFRI 580


>gi|70726426|ref|YP_253340.1| respiratory response protein SrrB [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447150|dbj|BAE04734.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           haemolyticus JCSC1435]
          Length = 585

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 154/394 (39%), Gaps = 37/394 (9%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + T +  G     F N++ ++       +T   ++   I+ + EGV        + LSN 
Sbjct: 224 VSTKDEIGELSHTFNNMSSEIQENIEALSTQKNIRDSLINSMIEGVLGLNDKREVILSNK 283

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               + K+ +                                 T + +  K ++ T    
Sbjct: 284 MADDIIKSIDK--------------------------------TVYKEIEKQIEATFVSK 311

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKNSFVQHVSYEL 580
                EY I        M     +    R+    +          D++K  F+ +VS+EL
Sbjct: 312 DTEFQEYEINNKYYVIIMSYVERIQQDGRSGIVVIIRDMTNEHNLDQMKKDFIANVSHEL 371

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P++ + G+T+ +    + +   +    +  +   +  L  LVN++L++A +DA  + +
Sbjct: 372 RTPISLLQGYTESIVDGIV-TEPEEIRDSLSIVLDETKRLNRLVNELLNVARMDAEGLTV 430

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N     +  LL++++     +  +  + + +  +     +  D  R+ Q+ + ++ NA  
Sbjct: 431 NKEKQPIKPLLSKMQMKYRQQAEDLELNMSLEPNIDDELWEYDADRIDQVLTNLIDNATR 490

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGL 758
           ++  G ++ +    D+      +K+ GS I  +  + VF+RF        R   G GLGL
Sbjct: 491 YTQPGDSISITTTTDDSYQTLHIKDTGSGISPEHLELVFDRFYKVEASRTRGKQGTGLGL 550

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            I +  I  HGG + + S     TT   ++P  +
Sbjct: 551 FICKMIIEEHGGTIKVESKVNKGTTFIIKLPKPK 584


>gi|298247425|ref|ZP_06971230.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550084|gb|EFH83950.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 624

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/381 (23%), Positives = 161/381 (42%), Gaps = 46/381 (12%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               +H+++GV +   +G I   N A R              HIR +      +    + 
Sbjct: 246 DAIFEHIADGVMLMDVNGCILRENQAAR--------------HIRELLQDEQNH--RQEI 289

Query: 497 WDLFAAIITSFDDERKSLQGTLELL----SDSVLEY--SIIPLPNAQTMLTFVNVTDSVR 550
             L A  I S   ER+ L  T+  +    S+ V EY  ++ PL   +  +  ++  +   
Sbjct: 290 TALLAGPIQSATTERRDLNFTVTAVVNTSSNEVREYMVNVSPLHLPKASIVPMHPRNRTT 349

Query: 551 AERA---------------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            E                  T +  A  +A+++K+ F+   ++ELR+PL  + GF   L 
Sbjct: 350 MEEQSLMASGAVVVWHDVTETRRLMAYAEAEQLKDEFITIAAHELRTPLAVLKGFAQTLL 409

Query: 596 ----TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
                 K   L   Q + ++ I  +++ +++L +D+LD+A + AG + L++  + L  LL
Sbjct: 410 VQTARGKGAELAEWQVEALQNIDQATSRMVDLASDLLDVARLQAGSLLLHFEPVDLIALL 469

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             V   +      + + + + +D        D+QR+ Q+ + I+ NA+ +S  G  + + 
Sbjct: 470 KRVVTRLQVTTECHTLTLHIFTD--HFVVDIDQQRIEQVLTNIIGNAIKYSPLGGVIQID 527

Query: 712 A-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
             A+     + SVK+ G  IPE     +F RF+   +       G GLGL +    +  H
Sbjct: 528 VDAQQQNTVLVSVKDTGIGIPEQQQGQIFGRFMRADNALNEGIAGTGLGLYLCRELVERH 587

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GGH    S +   +T     P
Sbjct: 588 GGHTWFESMEGEGSTFYLSFP 608


>gi|295400135|ref|ZP_06810115.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977914|gb|EFG53512.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 376

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             +  +S+ELR+PL  I+GF  LL+  +  SLNS+Q ++V+ I   +  LLNLVN++LD+
Sbjct: 15  ELISRMSHELRTPLNGILGFAQLLEMDE--SLNSQQQEFVQAILNGARHLLNLVNEMLDI 72

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++ G ++L Y  I L  +++E  + I     + NI+I   +         D  RL QI
Sbjct: 73  ARIETGEIQLAYDLIKLGSVIDESVKLIEPLAGKRNIKIVNQTQLDKYYVYTDSTRLRQI 132

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              +L NA+ ++    TV L +  + G+    +K++G  IP++  +++F  F       +
Sbjct: 133 LLNLLDNAVKYNRDNGTVTLTSRSEGGNICIHIKDSGIGIPKNEYENIFAPFYRIKG-TK 191

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS-KE 792
             G G+GLS+V+  I L GG + + S     +     +P+ KE
Sbjct: 192 VDGTGMGLSLVKQLIQLMGGTIGVESEMGEGSDFWFSLPAVKE 234


>gi|28898650|ref|NP_798255.1| hypothetical protein VP1876 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364916|ref|ZP_05777487.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030]
 gi|260879684|ref|ZP_05892039.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034]
 gi|260898843|ref|ZP_05907284.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466]
 gi|28806868|dbj|BAC60139.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086698|gb|EFO36393.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466]
 gi|308093405|gb|EFO43100.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034]
 gi|308111679|gb|EFO49219.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030]
          Length = 566

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 144/318 (45%), Gaps = 8/318 (2%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            H  ++     +    +  W   A  +    DER   +    +  + + +  I       
Sbjct: 115 HHFGHLDLKSDKPIARTPNWQNEALHLPIIIDERVVGELIFSVSLEQIEQAFISKQMELV 174

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           + L    ++  +  ER +    +   ++++    FV  +++ELR+PL  ++G  DLL  +
Sbjct: 175 SDLVHGVISRHLSLEREVE-LRKRAEESEKATKEFVAMINHELRTPLNGVLGSADLLSKT 233

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +LG     Q QY+  +  S  +L  ++ND+LD + ++AG+M++       +DL   +   
Sbjct: 234 QLG---EDQRQYLGNLIQSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGV 290

Query: 658 IATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            A K  E  I   +     +  F + D +R+ QI   ++ NA+ F+  G  V L+    N
Sbjct: 291 FAAKAAEKRIHFSIDKKLGIPEFLIGDLERITQILVNLIGNAIKFTHLGGVV-LRVEWVN 349

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
           G   F V++ G  IP     S+F+ FV      +R   G GLGL+I ++ ++L  G +S 
Sbjct: 350 GTAFFEVEDTGIGIPLAAQSSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISF 409

Query: 775 SSSDEGVTTINCRIPSKE 792
            S +   TT    IP KE
Sbjct: 410 ESEERKGTTFKVSIPLKE 427


>gi|116625119|ref|YP_827275.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228281|gb|ABJ86990.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 618

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 128/264 (48%), Gaps = 13/264 (4%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           QT+  +    + V  +R   L    +    A+  K++F+ ++S+ELR+PL+ I+  +DLL
Sbjct: 192 QTLQQYKEHLEQVVEQRTAELVIARDQADSANRAKSTFLANMSHELRTPLSVILASSDLL 251

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S        Q + ++ IS S   LL L++++LD+A +++G  +L  +   L   +  V
Sbjct: 252 NES---DPTPDQREDIDRISHSGKHLLGLIDNVLDVAKIESGKQELAIAASDLLSTVRMV 308

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + +  +  + ++ +       +  +V  D  +L QI   +L NA+ F+ +G+ V L+ +
Sbjct: 309 IEMMRGRAEDKHLALIYYQAPDVPRYVRVDAPKLRQILINLLGNAIKFTREGA-VELRLS 367

Query: 714 RDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
              GD      F F + + G  +P+     +F  F    +  Q+ G GLGL+I   F+ L
Sbjct: 368 AKPGDEPGYAQFCFDINDTGVGMPQHDLDRIFEPFQQVGNPSQQAGTGLGLTITRRFVEL 427

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
            GG + + S     +    ++P +
Sbjct: 428 MGGTLLVESEVGRGSCFVVKLPLE 451


>gi|322375300|ref|ZP_08049813.1| sensory box histidine kinase VicK [Streptococcus sp. C300]
 gi|321279563|gb|EFX56603.1| sensory box histidine kinase VicK [Streptococcus sp. C300]
          Length = 449

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 143/380 (37%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILSYMTDGVLATNRRGQIIMINDMAKKQLGVQKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   I     D +      L L     + ++++   
Sbjct: 135 LNKSILELL-----KIEDEYELRDLITQIPELTIDSQDVNGEYLSLR----VRFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L   +     +++     +  ++ +V D+L L+ +D    +L+   I     +  +
Sbjct: 235 DEGAL--YDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATTQLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRAQDQEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+K+ G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|166712857|ref|ZP_02244064.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzicola BLS256]
          Length = 1191

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 11/252 (4%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFS 722
            +      D  L      D  R+ QI   +L NA+ F+ +GS    + +            
Sbjct: 906  LAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTERGSVHLRIAVLPQHTQQGIRVE 965

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  +  +    +F RF          +  G GLGL+I        GG V++SS   
Sbjct: 966  VRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSELG 1025

Query: 780  GVTTINCRIPSK 791
                    +P +
Sbjct: 1026 QGACFVVELPLR 1037


>gi|154492920|ref|ZP_02032546.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC
           43184]
 gi|154087225|gb|EDN86270.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC
           43184]
          Length = 827

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 141/323 (43%), Gaps = 16/323 (4%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM--- 539
           +    +  YN S        ++   ++E  +      +    VL  +   +     +   
Sbjct: 243 LERAANLRYNNSIITSRINQMLRDIEEEEMNASMERVVKKQEVLRETSYLIGGIAILSLI 302

Query: 540 -------LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                  L   +++ S    + L +  +        +   +  +S+++R+PL++IIG+ +
Sbjct: 303 IVVVFIILITRDISRSQYYRQQLEKAKQYAEDLLHSREKLMLTISHDIRAPLSSIIGYIE 362

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL   +    + +Q  Y+E ++ S+  +L+LVN +LD   +++G M++      +  L N
Sbjct: 363 LLLRRR---PDERQRYYLENMTGSANHILSLVNGLLDFHRLESGQMEIQNVPFSVRTLFN 419

Query: 653 EVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-I 709
           E+  S         +   +    +G    +  D  RL QI S +LSNA+ F+ +G  V I
Sbjct: 420 EIYGSFRPIAEAKGLAFVLNMKEEGMDRIYSGDPIRLRQIVSNLLSNAVKFTHEGRIVLI 479

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           +K +  N     +V ++G  IPE+  + +F  F   +   +  G GLGLSI    I L G
Sbjct: 480 VKLSILNSQLTITVSDSGVGIPEEEQEKIFGEFARLSGTEKEEGFGLGLSITRKLIELMG 539

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G +S+ S     +     +P +E
Sbjct: 540 GTLSLKSVPGKGSDFTIVLPLRE 562


>gi|291519211|emb|CBK74432.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Hpt domain./Response
           regulator receiver domain [Butyrivibrio fibrisolvens
           16/4]
          Length = 857

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 166/379 (43%), Gaps = 22/379 (5%)

Query: 424 DLETKYNTLVKVQ--GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           DL+     ++ VQ   E I+  ++ V  +  D   K+++ A     K     +  G  + 
Sbjct: 113 DLKAMMIDIIDVQPNSEKIEKSTDDVYGYISDANFKMNDMAIVFDLKMSLLMMCIGVPLA 172

Query: 482 NIA------ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            IA      +        SD    F  ++T  +D+ K ++    +   +  E  ++    
Sbjct: 173 AIANYYTKTSIGGPLGLMSDFMHSF--VLTKDEDKLKVIRQISNMEIKTGDEIEVLSDYA 230

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             T L   +  +    ++ L  + E  ++A E K+SF+ ++S+E+R+P+  IIG  +++ 
Sbjct: 231 KSTFLEMADYIERFEKQQKLETELEITKQASEAKSSFLSNMSHEIRTPINAIIGMNEMII 290

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                  + +  +Y     ++   LL+LVNDILD + ++AG M++      L  ++N++ 
Sbjct: 291 REC---TDEQILEYANNAKSAGNSLLSLVNDILDFSKIEAGKMEILPVQYDLASMVNDLL 347

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             IA +  E  +  ++  D  + S  + D  RL Q+ + +L+NA+ ++ +G TV L  + 
Sbjct: 348 NLIAARAEEKGLDFEINVDSSIPSILIGDEIRLKQVVTNLLTNAVKYTERG-TVALSVSF 406

Query: 715 DNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +  D       F V + G  I E     +++ F            G GLG+SIV   + L
Sbjct: 407 EKNDENSITLHFEVSDTGIGIKESDIAKLYSPFERIEEIRNRTIEGTGLGMSIVRKLLAL 466

Query: 768 HGGHVSISSSDEGVTTINC 786
               + + S     ++   
Sbjct: 467 MDTKLIVESEYGKGSSFRF 485


>gi|222147633|ref|YP_002548590.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734621|gb|ACM35584.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 1410

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 164/368 (44%), Gaps = 7/368 (1%)

Query: 429  YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                V+     ++  ++GV     DG I+  N A  +L+  +E+ +     +   A    
Sbjct: 1038 LRIEVEELRSILETATDGVVTISTDGEIRTVNGAASALFNYDEDDIRGKPFVTLFAHESQ 1097

Query: 489  RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTD 547
            R   +  G      + +  +D R+ + G         L  +I  L ++        ++T 
Sbjct: 1098 RAILDYLGGLTGHGVASVLNDGREVI-GRESSGGFIPLFMTIGRLSSSNGFCAVIRDITQ 1156

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQ 606
              R E  L     A   A+  K  F+  VS+E+R+PL  IIGF D++   + G + + + 
Sbjct: 1157 WKRTEEELRSAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADIMADERFGPIGHGRY 1216

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++Y   I  S   +L++VND+LD++ ++AG M L++  + LN+ ++E    +  + +   
Sbjct: 1217 AEYAADIGRSGRHVLDIVNDLLDISKIEAGEMDLDFIAVGLNETVSEAVAIVQPQANGQR 1276

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKN 725
            + I+      + + VAD + + QI   ILSNA+ F+  G  +I+    + NG     +++
Sbjct: 1277 VIIRTALSQSVPNVVADMRSIKQIVLNILSNAIRFTPSGGQIIVSTNYEPNGSVTLRIRD 1336

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             G  +     +     F   +  G R    G GLGL + ++ ++ +    +I S+    T
Sbjct: 1337 TGIGMTRAELEQAMKPFRQVSPGGARLRGDGTGLGLPLTKAMVDANRASFAIQSTPNEGT 1396

Query: 783  TINCRIPS 790
             +    PS
Sbjct: 1397 LVEITFPS 1404



 Score = 40.7 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 60/235 (25%), Gaps = 21/235 (8%)

Query: 210  DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
             + G ++    +          +      E+  L    + +     S          S  
Sbjct: 956  RRDGRLVVV-RADDALVPVSARLQSIRWEEASALLLALVPQAATKPSEAVIADHTPRSVA 1014

Query: 270  EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ 329
            + G++             +    +D  +   +  ++     IL   T  +     +  ++
Sbjct: 1015 DAGDS--------SQPGLDHPTRLDAVEHTGLRIEVEELRSILETATDGVVTISTDGEIR 1066

Query: 330  FHNRSFVELWEIDLAFLATNP-----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              N +   L+  D   +   P     +++     L     L          +    + + 
Sbjct: 1067 TVNGAASALFNYDEDDIRGKPFVTLFAHESQRAILDYLGGLTGHGVASVLNDGREVIGRE 1126

Query: 385  SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            S        +  G+        +   G   +  ++T     E +  +  +     
Sbjct: 1127 SSGGFIPLFMTIGRL-------SSSNGFCAVIRDITQWKRTEEELRSAKRAAETA 1174


>gi|307718246|ref|YP_003873778.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM
           6192]
 gi|306531971|gb|ADN01505.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM
           6192]
          Length = 463

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 152/386 (39%), Gaps = 39/386 (10%)

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           +  G T    ++LT +  L              + H+ EG+ V     RI  +NP    +
Sbjct: 113 HTLGQTHTRLQDLTAESHL----------YHTVLTHMEEGIVVTDGRLRITYANPRALEI 162

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                          +      ++   +   +     ++S      +   T    S   +
Sbjct: 163 LSLPP---------EHRLKPLPQFLRSTSLLEHIHRTLSS--GTPLTHTLTTPPPSSRTI 211

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              +IPLP + +    +  +D  R ER            ++I+  FV  VS+EL++P+T 
Sbjct: 212 RLHLIPLPPSPSERLLLVASDITRLERL-----------EQIRRDFVSSVSHELKTPITT 260

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G+ + LK        + +++++E   + +  L  ++ D+L L+ ++     +      
Sbjct: 261 VLGYLETLKDLPPDD-EATRTRFLETALSHTHRLHQIIEDLLLLSRIEQAEAPVPLERAP 319

Query: 647 LNDLLNEVKQSI-ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+    + +   +   + + ++   D  L     +   ++Q    ++ NA+  +  G
Sbjct: 320 LAPLIRRAVELVRQARGETHPLTLEGPEDLALPL---NPGLMVQALYNLIHNALTHTPPG 376

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
           + V+++        +  V++ G  IP +    +F RF        R   G GLGLSIV+ 
Sbjct: 377 TPVVVRWRSTGSSVLIQVEDRGPGIPPEALPRIFERFYRVDTSRSRATGGTGLGLSIVKH 436

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +  H G + + S+    TT   R+P
Sbjct: 437 IVQAHKGTIDVHSTPGHGTTFTIRLP 462



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 20/140 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++   +  +    + +L ++   I + D    + + N   +E+  +             L
Sbjct: 120 TRLQDLTAESHLYHTVLTHMEEGIVVTDGRLRITYANPRALEILSLPPE-----HRLKPL 174

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVT---SNPRG 410
            +FLRS + L          E+I     S    TH  T   P+ +T+ + +     +P  
Sbjct: 175 PQFLRSTSLL----------EHIHRTLSSGTPLTHTLTTPPPSSRTIRLHLIPLPPSPSE 224

Query: 411 GTIWMFENLTVQVDLETKYN 430
             + +  ++T    LE    
Sbjct: 225 RLLLVASDITRLERLEQIRR 244


>gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 403

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 128/243 (52%), Gaps = 5/243 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +  +A  +A+ +K+ F+ ++S+ELR+P+  IIG+++LLK        +     ++ I
Sbjct: 156 ALQKAKQAAEEANSVKSQFMANISHELRTPMNAIIGYSELLKEEAEDLQITGLVDDIDNI 215

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL+++ND+LD + ++ G M L+     +  L+N++K  +   +      +++  
Sbjct: 216 EKAGRHLLDIINDVLDFSKIETGKMTLSLENFEILILINDIKMIVQPLVKNQLNHLEIDC 275

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFI-FSVKNNGSSI 730
              +G+  AD  ++ +I   +LSNA  F+  G+   ++ K + +N  +I F V + G  I
Sbjct: 276 ADNIGAMYADLSKVRRILLNLLSNASKFTENGTIKLIVSKESEENTQWIKFKVNDTGIGI 335

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  + +F+ F        R   G+G+GL++ + F+++  G + + S     +T   R+
Sbjct: 336 TDEQQQQIFHTFTQADGSSTRKYGGIGMGLTVTKRFVDIMQGTIHVESQLGQGSTFTVRL 395

Query: 789 PSK 791
           P K
Sbjct: 396 PIK 398


>gi|78187217|ref|YP_375260.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78167119|gb|ABB24217.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 896

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 148/374 (39%), Gaps = 22/374 (5%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           +     +            + + +  A      G I+  +P+  S   T +  L      
Sbjct: 520 REKSAQQIWEREAKYRAIFESIQDVYAEVNLATGTIEEISPSISSFGYTRDEILHR---- 575

Query: 481 RNIAATCSRYYNESDGWDLFAAI-----ITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                +   Y N  +   L +A+     +  F+    +  G    +S ++     +P   
Sbjct: 576 ----QSLDYYVNPEERDRLISALADMGSLRDFEAHFLTKSGEPITVSLAISLIKGVPDGL 631

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            + + T  ++++  + E         +++   +KN F+  VS+ELR+PL +I+GF+  L 
Sbjct: 632 MKIVGTMRDISERKKHE-------CQIQENIRLKNDFISSVSHELRTPLFSILGFSSTLL 684

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                   + + ++   I   S  L +L+ DIL ++ +D+G  K +         ++ V 
Sbjct: 685 KESGSLDPATRLEFTSIIHDESVRLSSLIEDILTISRIDSGKAKYSRQIFDPVKPVSAVV 744

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +  +  E  I +      +    V D+  L Q+   +L NA+ F+ KG  V +  +  
Sbjct: 745 AILRRQAEEKGIELVEEKPDREHRVVFDQDSLKQVMMNLLGNALKFTPKGGRVKVSISGA 804

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSI 774
                 +V + G  I     + +F+RF  +     Q  G GLGL+IV+  + + GG + +
Sbjct: 805 EEMVSITVDDTGIGIAASDHEKIFDRFYRSVPSAFQIEGTGLGLAIVKDIVEMQGGSIGV 864

Query: 775 SSSDEGVTTINCRI 788
            S  +  +     +
Sbjct: 865 QSELDRGSQFTVLL 878



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 91/291 (31%), Gaps = 28/291 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL----WANISYKKNTETE 229
           +  +L     + ++LS   S  +   D     +W  D AG +L    W    Y    +  
Sbjct: 2   MARDLERLDNENRELS---SRMRAAVDGAGIGIWEYDIAGSLLVWDDWMYRLYGIEPDRF 58

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-EHGNNKSYKIVRVLN---- 284
              ++  +        E   +    +    K F      +   G+    K   V+     
Sbjct: 59  SGAYEAWVNGLHPDDMERAAREADEAMTGGKPFDTEFRVVHPSGDVHHIKASAVVQYDEA 118

Query: 285 --SFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQN-RYLQFHNRSFVE 337
                  GI  D+++   + D+L      LH L      A+ + D + + +   N +   
Sbjct: 119 GVPLKMIGINYDITERRQLEDELAAKAAQLHALYEGIPDALLVADIDTKQIVQCNSAAEA 178

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPN 396
           + E+D   L     +      +   + L  QL  ++   +    V +S         +P 
Sbjct: 179 MMEVDRTVLLHRSIHS-----IHPPDVLEAQLCAFERQAKGELRVIESEVLTASGKRIPV 233

Query: 397 GQT-LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
             T   V+V   P    I  F ++T   + E       +    +   L   
Sbjct: 234 SVTAAQVVVNDKP--CLIGAFRDITESKEAEQAIRLANQQLQASEQQLMAA 282



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 106/301 (35%), Gaps = 47/301 (15%)

Query: 291 IAIDVSKEITVNDQLT-HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT- 348
           +A D+ +    N +L+      +    + I  +D    L   +     L+ I+    +  
Sbjct: 2   MARDLERLDNENRELSSRMRAAVDGAGIGIWEYDIAGSLLVWDDWMYRLYGIEPDRFSGA 61

Query: 349 --------NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                   +P + E     R+A +  E +   T  +   + ++      D  H+     +
Sbjct: 62  YEAWVNGLHPDDME-----RAAREADEAM---TGGKPFDTEFRVVHPSGDVHHIKASAVV 113

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLS 459
                  P    I +  ++T +  LE +            + + + + V   D + I   
Sbjct: 114 QYDEAGVPLK-MIGINYDITERRQLEDELAAKAAQLHALYEGIPDALLVADIDTKQIVQC 172

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N A  ++ + +   L              R  +     D+  A + +F+ + K   G L 
Sbjct: 173 NSAAEAMMEVDRTVL------------LHRSIHSIHPPDVLEAQLCAFERQAK---GELR 217

Query: 520 LLSDSVLEYSIIPLPNAQT------------MLTFVNVTDSVRAERALTEKNEALRKADE 567
           ++   VL  S   +P + T            +  F ++T+S  AE+A+   N+ L+ +++
Sbjct: 218 VIESEVLTASGKRIPVSVTAAQVVVNDKPCLIGAFRDITESKEAEQAIRLANQQLQASEQ 277

Query: 568 I 568
            
Sbjct: 278 Q 278


>gi|311696550|gb|ADP99423.1| integral membrane sensor hybrid histidine kinase [marine bacterium
           HP15]
          Length = 1127

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 5/252 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  L    +    R ++AL +  E    A+  K+ ++  +S+ELRSPL  I+G+  L++ 
Sbjct: 642 QNRLLMEEIVAHERTDQALQQAKEQAEAANGAKSRYLTGISHELRSPLNAILGYAQLMEN 701

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  ++ S + + +  I  S   L +L+  +LD++ ++AG + L+   + +  L+ ++  
Sbjct: 702 DE--TIPSHRKEALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDQVRIGLLMEQLVT 759

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  +  +         L   V  D +RL QI   +LSNA+ ++ +G  V L     
Sbjct: 760 MFRLQAEDKGLAFDYHCPNPLPEMVTTDEKRLRQILINLLSNAIKYTDRGG-VSLTLRYR 818

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSI 774
           +    F+V++ G  I  +  + +F  F      GQ R G GLGL+I      + GG +S+
Sbjct: 819 SQVAEFTVRDTGEGIAPENVERIFRPFERIRTPGQSRAGTGLGLTITRLLTEIMGGDISL 878

Query: 775 SSSDEGVTTINC 786
            S     +    
Sbjct: 879 ESVPGQGSVFRV 890


>gi|262381160|ref|ZP_06074298.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_33B]
 gi|262296337|gb|EEY84267.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_33B]
          Length = 795

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 27/343 (7%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-------- 519
            T    ++   + + +A    +Y  E    +L   +  S D     LQ + E        
Sbjct: 172 GTPVPPVASNDYEKEVAEFHHKYVPEDQRDELTRNL--SLDHVLSVLQNSREYVLFCQVM 229

Query: 520 ---LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFV 573
              +  D  L +S         +LT  ++ +    ER    L +  +  + A++ K+ F+
Sbjct: 230 ENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFL 289

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  IIG T +   S       +    ++ I  SS +LLNL+N++LD++ V
Sbjct: 290 SRMSHDIRTPMNAIIGMTTI--ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKV 347

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           ++G + L      + +LL  V   + T + +     +V     K    + D QR+ Q+  
Sbjct: 348 ESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQVKHEKLIGDVQRIQQVLL 407

Query: 693 KILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +LSNA+ ++     + L+           G F  +V +NG  I  D    VF  F    
Sbjct: 408 NLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAE 467

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  +G GLG++I  +  ++  G + + S     +     
Sbjct: 468 DATLRNIQGTGLGMAISRNIAHMMNGEIQVESEYGKGSVFTFT 510


>gi|255524740|ref|ZP_05391691.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255511513|gb|EET87802.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 330

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 138/273 (50%), Gaps = 10/273 (3%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYELRSPL 584
           Y I  L   + ++ + +++ S+  ++ ++EK + + K    ++++  F  ++S+EL++PL
Sbjct: 20  YYIYRLSAEEIVVVYDDISKSIEQQKTISEKEQIIYKTRELEKLRTEFFANISHELKTPL 79

Query: 585 TNIIGFTDL----LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
             I+G   L    ++  +      K    +     +   LL L+N+++D   +D+  ++L
Sbjct: 80  NIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLLRLINNLIDSTEIDSKFIEL 139

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N     + +L+ E+ QS+A  ++ NNI I   +D +      D  ++ +I   +LSN++ 
Sbjct: 140 NMVNCNIVNLVEEITQSVAKYIN-NNISITFDTDLEEKIIACDLDKVGRIILNLLSNSVK 198

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGL 758
           F+  G ++ +    D      +VK+ G  IP++   ++F+RF         +  G G+GL
Sbjct: 199 FTEPGGSIFVNIIDDKDYITITVKDTGIGIPQNKLNTIFDRFRQVDKSFTRKNEGSGIGL 258

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SIV+S + +H G + + S     T    ++P+K
Sbjct: 259 SIVKSLVEMHKGSIFVESKYGIGTKFTIKLPAK 291


>gi|148553622|ref|YP_001261204.1| signal transduction histidine kinase [Sphingomonas wittichii RW1]
 gi|148498812|gb|ABQ67066.1| signal transduction histidine kinase [Sphingomonas wittichii RW1]
          Length = 744

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 104/614 (16%), Positives = 202/614 (32%), Gaps = 58/614 (9%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
            + +   E      +K    +  L     +   ++ +A    F   +S      +++ ++
Sbjct: 3   AADETELEALREELRKLRKINAALIDRVERSTDMAGNAF-SMFETAISLEAMVRDRTSQL 61

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
              L    +A   +  +  +    ++    + + ++     +FD    L   N +++  W
Sbjct: 62  EDALAKLAQANADLARAHGLADAARM-RLRDAIDSINEGFVLFDAEDRLVLFNEAYLGFW 120

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
                 +    S DE+        +    L       +                L +G+ 
Sbjct: 121 PALAGQVREGMSFDEIARLAAERERPGGSLVAPDRWVSDRLARHGIADGGHVQALADGRW 180

Query: 400 LHVIVTSNPRGGTIWMFENLTVQV--DLETKYNTLVK---VQGETIDHLSEGVAVFGPDG 454
           + +       GG + ++ ++T     D   +   L +   V   T+D+LSEGV VF   G
Sbjct: 181 VQINELRTSEGGIVGIYTDITEAKAEDARERARELAERNLVLQSTLDNLSEGVCVFDDAG 240

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           R+   N A + + +  +         + +   C       D   L        D      
Sbjct: 241 RLSAWNEALQRILRLPDGWTQAIADHQGLVDWCRTRLGMRDKGCLD----WRGDSAGAGR 296

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA----------------------- 551
              L    D   E     +     ++ F +VTD  RA                       
Sbjct: 297 IERLCPAGDRSFEVRSTAMERGGQVIGFTDVTDVQRAQASLRETADTLERRVSERTGELV 356

Query: 552 ----------------ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                           E AL +      KA+  K  F+   S++L  PL     F   L 
Sbjct: 357 EVNRRLEAEVAERRSIEAALLDAKTVAEKANLSKTRFLAAASHDLLQPLNAARLFVAALG 416

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +L                S   LL     +L+++ +DAG ++   S   L+ +L  ++
Sbjct: 417 DRRLALPTRALVSQTSTALDSVEDLL---EALLEISRLDAGAIQPEISDFRLDRMLRTLQ 473

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
              A       + + +  D +     +D + L ++   +LSNA+ ++ +GS V L+    
Sbjct: 474 VEFAPLAQSAGLELTI--DAQPIWVRSDIRLLRRVLQNLLSNAIRYTPQGS-VALRCRTG 530

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                  V + G  I  D  + +F  F     R    G GLGL+IV   +++ G  + + 
Sbjct: 531 GDGVEIDVIDTGPGIAADKQQLIFEEFRRLDTRPS--GKGLGLAIVRRAVDMLGHAILLR 588

Query: 776 SSDEGVTTINCRIP 789
           S+          +P
Sbjct: 589 SAPGAGACFTVAVP 602



 Score = 77.7 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 87/289 (30%), Gaps = 26/289 (8%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           +L  +    A+               +   DS++      D    ++  N +Y       
Sbjct: 64  ALAKLAQANADLARAHGLADAARMRLRDAIDSINEGFVLFDAEDRLVLFNEAYLGFWPAL 123

Query: 230 GIVFQKA--IGESRKLFKEEIKK--RMISSSALEKNFCETVSTLEHG------NNKSYKI 279
               ++     E  +L  E  +    +++      +        + G      + +  +I
Sbjct: 124 AGQVREGMSFDEIARLAAERERPGGSLVAPDRWVSDRLARHGIADGGHVQALADGRWVQI 183

Query: 280 VRV-LNSFGEAGIAIDVSK--EITVNDQLTHTYE-------ILHNLTVAIAIFDQNRYLQ 329
             +  +  G  GI  D+++       ++     E        L NL+  + +FD    L 
Sbjct: 184 NELRTSEGGIVGIYTDITEAKAEDARERARELAERNLVLQSTLDNLSEGVCVFDDAGRLS 243

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             N +   +  +   +      +  L+++ R+   + +      W+ +     +      
Sbjct: 244 AWNEALQRILRLPDGWTQAIADHQGLVDWCRTRLGMRD-KGCLDWRGDSAGAGR-----I 297

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           +       ++  V  T+  RGG +  F ++T     +            
Sbjct: 298 ERLCPAGDRSFEVRSTAMERGGQVIGFTDVTDVQRAQASLRETADTLER 346


>gi|239905602|ref|YP_002952341.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795466|dbj|BAH74455.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 585

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 127/256 (49%), Gaps = 18/256 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-------------KTS 597
           A + L+E N  L++ D+IK+ F++ VS+ELR+P+T+I+GF  L+             +  
Sbjct: 325 AAKELSEANVRLQEVDKIKSVFIESVSHELRTPMTSIMGFIKLISKDFWKNFKPFLDQNE 384

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           KL     +  + ++ +      L  L+ND+LD A +++G MK +     +ND+L     +
Sbjct: 385 KLKKKTERIMENLQIVEFEGERLTRLINDVLDSAKIESGRMKWDDQIFQINDVLWLAVST 444

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I  ++    + +   +D       AD  RL+Q+   +LSNA+ F+S G   +   +  + 
Sbjct: 445 IKGQLP-IGVDVLYSNDNSSPWVKADPDRLMQVMMNLLSNAVKFTSNGYVSVSYESSLSN 503

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS----NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               +VK+ G  IP+   + VF+RF      N +  + +G GLGLSI +  ++ +GG + 
Sbjct: 504 ILTVTVKDTGVGIPDGDLEKVFDRFHQVQQDNDNESKPKGTGLGLSICKQVVDHYGGKIW 563

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +      P
Sbjct: 564 VESELGKGSFFKFTFP 579


>gi|217976388|ref|YP_002360535.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217501764|gb|ACK49173.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 795

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/463 (20%), Positives = 187/463 (40%), Gaps = 41/463 (8%)

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS---NPRGG----TIWMFEN 418
           P+  +     E + +    S  H        G+ + +   +     + G     + +  +
Sbjct: 300 PQDGDLAAIAEMLTASKAESVDHAFRMQNVKGEWVWLRARAELVREQAGATPHLVGICVD 359

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T Q  L  +  T      + I+ +SE   ++  D ++ + N  F+         +  GT
Sbjct: 360 ITEQKTLAERTATADMRLRDAIESVSEAFVLWDADNQLVMCNSKFQKFHNLSSEAVISGT 419

Query: 479 HIRNIAATCSRYYNESDGW--DLFAAIITSFD-----------DERKSLQGTLE------ 519
               +    +    ++     +   A   +++           +ER++  G         
Sbjct: 420 PYAQVMEKGTPPMIQAQTALGERPQAGARTYEARLGDGRWLQINERRTKDGGYVSVGTDI 479

Query: 520 ----------LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
                     + S+  L  ++  L  ++  L       +  AER L +K E    A++ K
Sbjct: 480 TALKRHEEQLMESERRLMATVADLRKSRQTLEQQAQQLADLAERYLEQKAE-AETANKAK 538

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDIL 628
           + F+ ++S+ELR+PL  IIGF+++++    G L + K   Y   I  S   LL +++D+L
Sbjct: 539 SEFLANMSHELRTPLNAIIGFSEVMQQETFGPLGSKKYVDYSNDIKQSGEYLLGVISDVL 598

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ +++G ++L  S   L+  ++    ++     E  I + V          ADR    
Sbjct: 599 DMSRLESGRVRLQKSEFELDAAVSGALATVEQIAREKEITL-VAEAMPGKRANADRAAFE 657

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NA 746
           +I + +L NA+ F+ K   V ++A    G     +++ G  I       +   F     +
Sbjct: 658 KILAILLRNAVKFTPKDGRVSVRARFVQGALNVYIEDTGIGIAPAAQARLGRPFEQMGGS 717

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +G GLGL+I  S ++LHGG + I S+    T +   +P
Sbjct: 718 LDNGMKGSGLGLAIARSLVDLHGGSMRIRSTVGSGTIVLVHLP 760



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 117/388 (30%), Gaps = 53/388 (13%)

Query: 94  EIIGQLHQRIDIPQTDTDLLSFENWLK--FHHYIKL-------SKATEKLRKEGQSFDLV 144
           EII        I     D L     L         L       + A   +R   Q F  +
Sbjct: 131 EIIASTPGARAIRGPLLDFLGPSQPLTIFAEKAGVLRIILPDGADALATVRTLNQPFGQL 190

Query: 145 AETQNDCAIKIEGRVSGSCAFLRILSLDGIYS--------ELAETTLKCKKLSNHISVFK 196
           A      A+  + R +     + +++   +          + +      +          
Sbjct: 191 AIVYPMSAVLADWRAASLRTGVLLVATALVLIALALAYFWQASRAREADRVCERVRDRID 250

Query: 197 VLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK-----K 250
                    +W  D   G I W++  Y +      +    + G+   L   +        
Sbjct: 251 TALSRGRCGLWDWDLARGRIYWSDSMY-QILGLAPVGNFLSFGDINALVHPQDGDLAAIA 309

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVR--VLNSFGE----AGIAIDVSKEITVNDQ 304
            M+++S  E            G     +     V    G      GI +D++++ T+ ++
Sbjct: 310 EMLTASKAESVDHAFRMQNVKGEWVWLRARAELVREQAGATPHLVGICVDITEQKTLAER 369

Query: 305 LT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE--- 357
                    + + +++ A  ++D +  L   N  F +   +    + +     +++E   
Sbjct: 370 TATADMRLRDAIESVSEAFVLWDADNQLVMCNSKFQKFHNLSSEAVISGTPYAQVMEKGT 429

Query: 358 --FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
              +++   L E+       +     Y++         L +G+ L +       GG + +
Sbjct: 430 PPMIQAQTALGERP------QAGARTYEA--------RLGDGRWLQINERRTKDGGYVSV 475

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHL 443
             ++T     E +     +    T+  L
Sbjct: 476 GTDITALKRHEEQLMESERRLMATVADL 503


>gi|288942502|ref|YP_003444742.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897874|gb|ADC63710.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 806

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 152/382 (39%), Gaps = 29/382 (7%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           Q E  +    G+A    +G++ L               L+       +         ++ 
Sbjct: 241 QPEAFETFP-GLAAIFAEGKLALWKGGQGRQMLWVPMFLTEDGFPLWVGRVVDPSPLDAF 299

Query: 496 GWDLFAAIIT-------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
             +L   ++T       +     + +   +E     +L      L + Q +         
Sbjct: 300 RNELIVRVLTIIAVLVLAVMGLARWIAARVEHFGHELLGGIQRILRDGQPLRFSWTGPRE 359

Query: 549 VRA--ER-------------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           +R   ER             A       L +++  K+ F+ +VS+ELR+PL +I+  + +
Sbjct: 360 LRELGERLTELAATHAEHLYAARAHTRELERSNRYKSQFLANVSHELRTPLNSILLLSKM 419

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L     G L+  Q +  + I  +   L  L+++ILD++ +++G + LN   + L  +L +
Sbjct: 420 LGAEGNG-LSPTQRRQAQVIHEAGRDLRALIDNILDISRIESGRLGLNPEPVDLRPMLED 478

Query: 654 VKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK 711
           + +  + ++ +  + + +  +         DR +L QI    L+NA+ F+  G   + + 
Sbjct: 479 LIELFSPQLADKPVELSLRLEPDAPEHIRTDRDKLRQILKNFLANAIKFTECGEVRIEVG 538

Query: 712 AARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
              ++    I SV + G  IP D  + +F  F       +RR  G GLGL+I      L 
Sbjct: 539 GCAESERPLILSVIDTGIGIPPDKQEIIFEAFQQADGSTRRRYGGTGLGLAISRELATLL 598

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + + S+    +  +  +P 
Sbjct: 599 GGRIEVESTPGIGSRFSLLLPL 620


>gi|167590631|ref|ZP_02383019.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 985

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 151/373 (40%), Gaps = 22/373 (5%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +      +    I     G+ +    DG   +SN   R   +        G  I      
Sbjct: 356 RLIESEALNRTLIRAAPTGIMLLSLADGETMVSNDTMREYEQAASEP-PLGKRIWQAYRD 414

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +R            A+  + D     L   +       ++           + T ++VT
Sbjct: 415 SARGPGAPRVMTHELAVELA-DHGSTYLAANVVRTRYRGVDV---------LLCTLLDVT 464

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              R E  L E  EA   A+  K++F+  +S+E+R+PL  IIG  +L+      SL   +
Sbjct: 465 ARKRTELKLREAREAAEDANRAKSTFLATMSHEIRTPLNAIIGNLELMAR---ASLPPSE 521

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I++SS  LL ++ND+LDL+  ++  M L      L DLL +V           +
Sbjct: 522 RRRLKTIASSSDALLRVINDVLDLSKAESNQMALECIPFDLRDLLRDVAAIFRPVADAKH 581

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---DFIF 721
           + +       L   ++ D  RL Q+ S ++ NA+ F+ +G  T+  + A D         
Sbjct: 582 LTLDCRMAADLADGYLGDPTRLRQLVSNLVGNAIKFTKRGGVTIDARVATDAAGARRVAI 641

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V++ G  IPED   ++F+ ++        +  G GLGL +      L  G +++ S  +
Sbjct: 642 AVRDTGIGIPEDALPNLFDVYMQADPSIYRRFGGTGLGLPLCGRIARLMHGELTVESRVD 701

Query: 780 GVTTINCRIPSKE 792
             TT    +P  E
Sbjct: 702 EGTTFVAALPLPE 714


>gi|260778949|ref|ZP_05887841.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605113|gb|EEX31408.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 786

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 10/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R   A     E   KA+E K+ F+  +S+ELR+P+  ++G   ++K         KQ
Sbjct: 244 ELKRNNLAYQVATENAEKANEAKSIFLATMSHELRTPMNGVLGIAQIIKDESQELETKKQ 303

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +Q +     S   L+ ++NDILD + V+ G ++L      + +L+  +++++  +     
Sbjct: 304 AQIL---IDSGQHLMTILNDILDFSKVEQGKLELEIHPFSIGELVLSLEKTLGPQAANKG 360

Query: 667 IRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFS 722
           ++  + +          D  R  QI   ++ NA+ F+  G  + ++ A D     +   S
Sbjct: 361 LKFVIQNKVPANIELHGDPARTRQILFNLVGNAIKFTQTG-KIEVEFALDTSIPPNVCMS 419

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V ++G  I  +   ++F  F        R   G GLGLSIV+  + + GG VS+ S    
Sbjct: 420 VTDSGIGIEREKLDTIFTPFEQAELSTTRKFGGTGLGLSIVKRLVEMMGGKVSVFSQPNV 479

Query: 781 VTTINCRIPSK 791
            T     IP +
Sbjct: 480 GTQFTLTIPFE 490


>gi|160935404|ref|ZP_02082786.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441762|gb|EDP19462.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC
           BAA-613]
          Length = 948

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 117/239 (48%), Gaps = 8/239 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    E    A+  K  F+  +S+E+R+P+  I+G +DL  TS +  +  +  + +  I 
Sbjct: 553 MQSSLERAEAANRAKGEFLSRMSHEIRTPMNAIVGLSDL--TSMMDDVPEQVRENLGKIR 610

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS  LL L++DILD++ +++G M ++     +N  + E++  +  +     +   V  D
Sbjct: 611 SSSQYLLRLISDILDMSRIESGKMTVSNEAFSMNRAVEELEDMLTAEATRRGLEFTVEKD 670

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI--FSVKNNGSS 729
            +  + + D  RL Q+ + ++SNA  F+  G ++I++  R    N   I  F V +NG  
Sbjct: 671 VENRTLMGDVIRLQQVLTNLVSNAFKFTPAGGSIIMRVTRTKSTNQQVIYKFQVIDNGVG 730

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  K VF  F     +  + +G GLGL+I  + + L GG + + S     +     
Sbjct: 731 ISVENQKRVFGAFEQVGPNYSKSQGTGLGLTISRTIVGLMGGELKLKSELGKGSEFYFS 789


>gi|300214839|gb|ADJ79255.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 461

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 164/372 (44%), Gaps = 28/372 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q  L  KY+   +     ++++  G+ V     R+ +SN   +  +  +    +      
Sbjct: 109 QNKLSKKYDKRKREYLSLLEYIDIGILVIDYKDRLTMSNELGKDFFDFDNEWKNQDY--- 165

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                   Y    D   L   +  + +D++K +   ++ +   ++E S I +P       
Sbjct: 166 ------QNYIYNLDVRKLIEQVKLTKEDKKKQIVLKVDTVQ-KIVETSAIYIPIDSERYL 218

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            + +   + A++            ++ +  FV ++S+E+++P+T I GF++ L    L  
Sbjct: 219 IMLMLRDLTAQKE----------VEKKQLDFVGNLSHEIKTPITAITGFSETLLDGALDD 268

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                 Q++E I   ST L NLV+D++ ++ + + G   LN   + +  L+ +  Q  + 
Sbjct: 269 -KEVSKQFIEIIHDESTKLSNLVDDMITISRLNEHG--SLNIELVNIFKLVKDTLQLFSH 325

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDF 719
           ++ +  + +++  D +L S   D+ +L  I + ++ NA+ ++ +   + +K   D   ++
Sbjct: 326 EIEKKGLNVRIEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNEW 384

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F + + G  I ++  + +F RF      H     G GLGL++V   ++   G + + S 
Sbjct: 385 VFVISDTGIGISDEDKERIFERFYRVDKSHSKTVGGTGLGLAVVRKSVDALSGRIKVKSQ 444

Query: 778 DEGVTTINCRIP 789
               TT    +P
Sbjct: 445 INEGTTFYVILP 456


>gi|146302442|ref|YP_001197033.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
            UW101]
 gi|146156860|gb|ABQ07714.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
            UW101]
          Length = 1350

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 178/432 (41%), Gaps = 49/432 (11%)

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
             E   ++    NI S  + +        + + +   +I  + P    +  F+  + ++ L
Sbjct: 803  EEIYIFQVLANNISSALERNRNESKI--IESEEKFKLIANNIPGTVYLSKFDAFSTKIFL 860

Query: 426  ETKYNTLVKVQG-ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
              +   L      E I++    +++   D R ++ N         + + L  G  + NI 
Sbjct: 861  NDEIQNLTGYSKVEFIENNLSFLSLIHHDDRDEVIN--------NQIDNLQNGMPLHNIY 912

Query: 485  ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                R   E    + F  +I   D+        +E +     + +               
Sbjct: 913  RI-KRKTGEYIWVEEFGDVIKKGDE--------IEFVGGIYFDIT--------------- 948

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              +    E A+    +    A++ K+ F+ ++S+E+R+PL  IIGFT LL  ++   L  
Sbjct: 949  --NKKETEDAIK-AKQLAEAANKSKSDFLANMSHEIRTPLNGIIGFTHLLMKTE---LEE 1002

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             Q +Y+  I+ S+  LL ++NDILD + ++AG ++L      +  +L +V   I  + ++
Sbjct: 1003 IQEKYMTTINQSAHSLLEIINDILDFSKIEAGKLELFIDLYDIKKVLGQVFDLIVFESNQ 1062

Query: 665  NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG--D 718
             ++++++  D  +      D  R+ QI   +LSNA+ F+++GS    V + +   N    
Sbjct: 1063 KSLQLELNVDHDVPKYIWTDIVRIKQILINLLSNAVKFTNEGSIKLNVSVLSKTKNNFCT 1122

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              FSV + G  I E   K +F  F        R   G GLGL+I    + L    + + S
Sbjct: 1123 IRFSVIDTGIGIMEKNQKKIFKAFSQADSSTTRKFGGTGLGLTISNQLLALMESRLQLES 1182

Query: 777  SDEGVTTINCRI 788
            +    +     +
Sbjct: 1183 TIGEGSNFFFDL 1194


>gi|28868689|ref|NP_791308.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851928|gb|AAO55003.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 1213

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 178/465 (38%), Gaps = 21/465 (4%)

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                 +   +  ELL  L   NK  E+      +        SS      W        
Sbjct: 486 WSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSSLPQPSLWGRIPRWVF 542

Query: 401 HVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            V+  +   G     +       +  ++  E + N  +  +   +D +   + V    GR
Sbjct: 543 WVVALALLTGLVSLAWSSRLKVQIRQRLKAERQLNDQLAFKHALLDGIPNPIYVRDLKGR 602

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---FDDERK 512
           +   N ++         +++    +        R   E    D  A +      F D   
Sbjct: 603 LISCNRSYEQSLGVSFEQMNGRRLLD--VEVIPRPLAEQMHADYLALLENHQPVFSDRTI 660

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            L G    +    + +          +  ++++T+    E+ L +      +A+E K+ F
Sbjct: 661 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 720

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  IIG  + L+  +      + +Q ++    S+T L+ L+ + LDLA 
Sbjct: 721 LASMSHEIRTPMGAIIGLLE-LECEQALRRGEEPTQGLQVAHRSATELVALIGESLDLAR 779

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIF 691
           ++AG M+L+     L      V    + +  E  + +++  ++   G +  D  RL Q+ 
Sbjct: 780 IEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQVV 839

Query: 692 SKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +L NA+ F+ +G+ V+ ++ + D  D       + ++G  I     + +F  F   A 
Sbjct: 840 HNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAAD 899

Query: 748 RG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGLSI    + L  G +S+ S     T +   +P 
Sbjct: 900 DTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPL 944



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 57/168 (33%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +     ++L++ ++    L D +   ++ RD  G ++  N SY++
Sbjct: 553 LVSLAWSSRLKVQIRQRLKAERQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQ 612

Query: 225 NT----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +     E         +    +   E++    ++     +      +    G   +    
Sbjct: 613 SLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTIELSGKRMNVWQW 672

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL     +      A ++F
Sbjct: 673 TVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 720



 Score = 38.4 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 127/407 (31%), Gaps = 59/407 (14%)

Query: 63  SEICDQLSKYHSL------LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE 116
           +++  ++S+   L               V        ++   L +  +  +      SF 
Sbjct: 336 ADLLARISRMTGLQFVHKEAASTQQSIEVLRAG--RADMNTTLAENAERRKFLDFTYSFG 393

Query: 117 --NWLKFHHYIKLSK-ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
             +W+   H  + S+ + + L   GQ   L A      A++   +       LR++    
Sbjct: 394 GNSWMFVVHSDRSSQVSLDSL--SGQVLALPAR----HALEDMIKREYPLIKLRLVETYD 447

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
               L E+      + N    +      L      R   G   W+   +  +        
Sbjct: 448 QARALVESGAADATIQNEAGAYLFPSGQLKV---ARSVDGK--WSPDRF--SVIKTQPEL 500

Query: 234 QKAIGESRKLFK----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
              + ++ + F       I+ + + SS  + +    +          + +V +    G  
Sbjct: 501 LGILNKALEEFPVAELRSIRLKWLGSSLPQPSLWGRIP------RWVFWVVALALLTGLV 554

Query: 290 GIA----------IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
            +A            +  E  +NDQL   + +L  +   I + D    L   NRS+ +  
Sbjct: 555 SLAWSSRLKVQIRQRLKAERQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSL 614

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
            +    +            L     +P  L  +   + +  +        D     +G+ 
Sbjct: 615 GVSFEQMNGR--------RLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTIELSGKR 666

Query: 400 LHVIVTSNP----RG---GTIWMFENLTVQVDLETKYNTLVKVQGET 439
           ++V   + P     G   G +  + ++T +  LE +    V++  + 
Sbjct: 667 MNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQA 713


>gi|319427233|gb|ADV55307.1| hybrid periplasmic sensor histidine kinase, BarA [Shewanella
           putrefaciens 200]
          Length = 933

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y+  I
Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYINTI 340

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+T LL ++NDILD + ++AG M L      L + L +    I+       + + V  
Sbjct: 341 ERSATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVVDI 400

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF---SVKNNGS 728
              +      D  R+ QI + ++ NA+ F+  GS  V L+    + + +     V + G 
Sbjct: 401 APNVPDHVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDTGI 460

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +  +SS +  +    
Sbjct: 461 GIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWF 520

Query: 787 RIPS 790
            +P 
Sbjct: 521 TLPL 524


>gi|288959744|ref|YP_003450084.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912052|dbj|BAI73540.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1082

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 99/487 (20%), Positives = 184/487 (37%), Gaps = 39/487 (8%)

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           L++ N + V       A     P   + L+ L     LP  L  +   +    +   + T
Sbjct: 282 LRYANTAAVHELGALAAGGRPQPVEGQPLDAL-----LPPDLVARVTADLHACIAAGAPT 336

Query: 388 HKDTWHLPNGQTLHVIVTSNP----RGGTIWM---FENLTVQVDLETKYNTLVKVQGETI 440
             +  H   G T    V+  P     G  + +     ++T + + E           +  
Sbjct: 337 RFEEQHSQGGVTRWWEVSQVPIRDESGAIVMLSVGARDITRRHEAERAIRVSEARYRQLA 396

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
             +++ +   G DG  +  + + R    +    L     +  +           D  D  
Sbjct: 397 RGVTDIIGRIGLDGVRRFCSESTRDRLGSPPAELVGRPLVERM---------HPDDRDAA 447

Query: 501 AAIITSFDDERKSLQGTLELL----SDSVLEYSIIPLPN-----AQTMLTFVNVTDSVRA 551
           AA ++    ER +L+ T  L          E ++  + +      + +    ++T     
Sbjct: 448 AAGLSRLTPERPTLKTTYRLRHADGRWLWFEAAVRLVTDDWGAPQEYVSVERDITSRKIM 507

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYV 610
           E  L +  +A   A   K  F+  +S+ELR+P+  +IGF DL+     G + N++   + 
Sbjct: 508 EAELQDARQAAEAASRGKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRDFA 567

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+N+ILD    +AG + L+   + L+       + +  +     I I 
Sbjct: 568 INIRDSGQHLLELINEILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIAIA 627

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729
              +        D +R+ QI   +LSNA+ ++  G +V L      +G  +  V++ G  
Sbjct: 628 AKVEPAARHMRGDERRIRQILLNLLSNAVKYTPAGGSVSLTTGPAPDGGLLLEVRDTGVG 687

Query: 730 IPEDMCKSVFNRFVSNA-------HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           IPE   + V   +              +  G GLGL +    + LHGG ++++S     T
Sbjct: 688 IPEPELERVPPAYTRVDGPDGRRAESRRIEGSGLGLPLTRRLVELHGGTLTLASRVGRGT 747

Query: 783 TINCRIP 789
           T+    P
Sbjct: 748 TVTVHFP 754



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 84/275 (30%), Gaps = 41/275 (14%)

Query: 195 FKVLFDSLD--FLVWHRDQAG--DILWANISYKKNTETEGIVFQKAIGESRKL---FKEE 247
           F+ +FDS     LV      G   + +AN +            +    E + L      +
Sbjct: 258 FRAVFDSSVDSLLVVRVGADGAFTLRYANTAAVHELGALAAGGRPQPVEGQPLDALLPPD 317

Query: 248 IKKRMISSS----ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI------AIDVSK 297
           +  R+ +      A            + G  + +++ +V        I      A D+++
Sbjct: 318 LVARVTADLHACIAAGAPTRFEEQHSQGGVTRWWEVSQVPIRDESGAIVMLSVGARDITR 377

Query: 298 EITVNDQLTHTYEILHNLTVAIA-IFDQ---NRYLQFHNRSFVELWEIDLAFLATNPSND 353
                  +  +      L   +  I  +   +   +F + S  +      A L   P   
Sbjct: 378 RHEAERAIRVSEARYRQLARGVTDIIGRIGLDGVRRFCSESTRDRLGSPPAELVGRP--- 434

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLH----VIVTSN 407
            L+E +          +       +  +     T K T+ L   +G+ L     V + ++
Sbjct: 435 -LVERMH-------PDDRDAAAAGLSRLTPERPTLKTTYRLRHADGRWLWFEAAVRLVTD 486

Query: 408 PRGG---TIWMFENLTVQVDLETKYNTLVKVQGET 439
             G     + +  ++T +  +E +     +     
Sbjct: 487 DWGAPQEYVSVERDITSRKIMEAELQDARQAAEAA 521


>gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 160/393 (40%), Gaps = 33/393 (8%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           VDL    N         I+     + V   DG I  +N    +L+  +   +S G  +  
Sbjct: 308 VDLNRALNESESRANRIIESTPSAMVVVEADGTIARANTRAEALFGYDAGGMS-GLAVDR 366

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA---QTM 539
           +     R  + +      +   T    +   L    +  S   +E  + PL      QT+
Sbjct: 367 LVPERVRDRHATHRSGFMSNGSTRTMGQGIELFACRKDGSLFPVEIGLAPLTTGEMRQTI 426

Query: 540 LTFVNVTDSVRAERALTEKNEALRKA------------------DEIKNSFVQHVSYELR 581
            + +++T     +  LT+  + L +                    ++K  F+ ++S+E+R
Sbjct: 427 ASVIDITQRKAMQAELTQHRDRLEEQVAARTVELVNARNEAERLAQVKAQFLANMSHEIR 486

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I G   L++      L+ KQ++ ++ +  +S  LL+++N IL+L+ +DAG + L 
Sbjct: 487 TPLNAIGGMAHLIRRQ---GLSEKQTRQMDSLERASAHLLSVINSILELSKIDAGALHLA 543

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + +  L++EV      +  + +I ++     +  ++V D  RL Q     +SNA+ F
Sbjct: 544 SEPVSVTSLVHEVIDLQRQQATDKHITLRCELALRTDAWVGDPTRLRQALLNYVSNAIKF 603

Query: 702 SSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
           +  G+ V+++    + D       F V++ G  I  D    +F  F      H  Q  G 
Sbjct: 604 TGSGA-VLIRVDPVDEDAASALIRFEVQDTGIGISPDAMPRLFKAFEQADNSHTRQYGGT 662

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL+I        GG    +S     +T    
Sbjct: 663 GLGLAITRMVARQMGGDSGATSLPGVGSTFWFT 695


>gi|332977098|gb|EGK13902.1| sensor histidine kinase BaeS [Desmospora sp. 8437]
          Length = 461

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 113/247 (45%), Gaps = 6/247 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +  +A  + ++ L++A+E + + V  V++ELR+PLT + G  + ++          +
Sbjct: 199 EYGKTAKAFNQMSKQLQQAEEARKNLVADVAHELRTPLTVLQGKLEWIQQRGQ----PVR 254

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  +      L  LV+D+  L+  +A  + L+     L  LL  +   I        
Sbjct: 255 PENLLPLQDELIRLNRLVDDLHQLSLAEAKKLPLDQKPTDLPVLLRRIIDRIQPDADRKG 314

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + I++  D  +     D  R+ Q+F  +L+NA+ ++  G +V +   +        V + 
Sbjct: 315 VEIRLHCDAGIPPISVDPNRITQVFLNLLTNALRYTPPGGSVKVDITKKKEGLQIQVSDT 374

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +    +FNRF          R G+GLGL+I + F+  H G + + S+ +  TT 
Sbjct: 375 GVGIPPEHLPHLFNRFYRTDESRARNRGGMGLGLAIAKEFVLAHHGTIEVESAPDQGTTF 434

Query: 785 NCRIPSK 791
              +P +
Sbjct: 435 IVELPFQ 441


>gi|332524883|ref|ZP_08401070.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332108179|gb|EGJ09403.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 893

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 161/387 (41%), Gaps = 43/387 (11%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           ++     ++  S  + +  P+ RI+  N AF          +        + +T  R  +
Sbjct: 363 LRELSLAVEQTSSSIVITDPEARIQYVNQAFLDQTGYSREEI--------LGSTPERLRS 414

Query: 493 ESDGWDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----N 544
                D  A++  +    +  R       +  S+ V    + PL + +  +T       +
Sbjct: 415 ARTPADTVASLWRTLQAGETWRGEFVNRRKDGSEYVESAVVTPLRSPEGRVTHFVAVSED 474

Query: 545 VTDSVRAERALTEKNEALRK------------------ADEIKNSFVQHVSYELRSPLTN 586
           +T+  R ER L      L                    A + K++F+ ++S+E+R+PL  
Sbjct: 475 ITERRRLERELDGHRHHLEMLVASRTAELEAARAQADAASQAKSAFLANMSHEIRTPLNA 534

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+GFT L++     ++ +++   +  +  ++  LL ++NDILDL+ ++AG ++L+     
Sbjct: 535 ILGFTHLMRRDAPDAVTAER---LARVDGAAQHLLAVLNDILDLSKIEAGRLELHEHDFS 591

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L +L++   + +A +     +R++   D        D  R+ Q    +LSNA+ F+ +G 
Sbjct: 592 LRELVSRCIEQVAERARTKALRLESDVDDVPDVLFGDSMRIAQALLNLLSNAVKFTEQGG 651

Query: 707 T-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
             + ++     G ++   F+V + G  I       +F  F         +  G GLGL+I
Sbjct: 652 VSLQVRLLAREGPWLQLGFTVADTGIGIEAAKLGQLFTAFAQADATMARRFGGTGLGLAI 711

Query: 761 VESFINLHGGHVSISSSDEGVTTINCR 787
                 L GG V++ S     +  +  
Sbjct: 712 TRRLALLMGGDVAVDSRVGEGSRFSFS 738



 Score = 45.3 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 75/211 (35%), Gaps = 32/211 (15%)

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTL-----EHGNNKSYKIVRVLNSFGEAGIAID 294
            R+L ++       + +   ++    ++ +     +    +      +  S  +  +++D
Sbjct: 288 GRRLGRDVASLAAPAGTPEAQSGVAEIAAVRRQLDDAAQRRRLSEDALRRSQLQTQLSMD 347

Query: 295 -----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-LAFLAT 348
                 ++       L      +   + +I I D    +Q+ N++F++         L +
Sbjct: 348 EAVSARARAEAAAASLRELSLAVEQTSSSIVITDPEARIQYVNQAFLDQTGYSREEILGS 407

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW--HLPNGQTL--HVIV 404
            P      E LRSA   P       W+       ++ ET +  +     +G       +V
Sbjct: 408 TP------ERLRSAR-TPADTVASLWR-----TLQAGETWRGEFVNRRKDGSEYVESAVV 455

Query: 405 TS--NPRGGT---IWMFENLTVQVDLETKYN 430
           T   +P G     + + E++T +  LE + +
Sbjct: 456 TPLRSPEGRVTHFVAVSEDITERRRLERELD 486


>gi|163794580|ref|ZP_02188551.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180304|gb|EDP64827.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 860

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 169/379 (44%), Gaps = 12/379 (3%)

Query: 409 RGGTIWMFENLTVQV-DLETKYNTL---VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
            G  +W    +   + +LE +++ L    ++   T  H   G+A  G DG+  + N  F 
Sbjct: 303 GGLAVWSTRTIGKLLSELEHEHSALQKNERLLSATFHHAGVGIANIGLDGKFLMVNERFS 362

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            +   E + L       +I     R  +     DL   +  ++  E++ + G+   +  +
Sbjct: 363 KIVDHEPSSLLS-MSFDDITHPEDRAASHEGVRDLLNGVRRTYVAEKRYI-GSHGDIVWT 420

Query: 525 VLEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            L  +++   +      +    +++D  RA+ +L        +A++ K+ F+  +S+E R
Sbjct: 421 QLTGALLTKEDGSPDYFISVIEDISDRRRAQESLRLALVDAERANQAKSEFLATISHEFR 480

Query: 582 SPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL  I GF+++L     G L + K  +Y   I +SS  LL LVN  LDL++ +AG   L
Sbjct: 481 TPLNAISGFSEMLACRYFGDLGSPKYEEYAHNIWSSSQHLLQLVNATLDLSSAEAGNPAL 540

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               + + +++++  +S+  +     I   V          AD   + QI   +LSNA+ 
Sbjct: 541 TIEPVDIAEIVDDCVRSLTVEFERGGITTSVSVQPDRPPLHADAGAIRQILLNLLSNAVK 600

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGL 758
            +  G ++ ++   ++   +  V + G  +PE +   + + F          R G GLGL
Sbjct: 601 ATPPGGSISVRVEANSDKHVLVVSDTGMGVPEHLVDRMTDPFTVIGGNAYHSRDGKGLGL 660

Query: 759 SIVESFINLHGGHVSISSS 777
           +IV+S +  H G + I S 
Sbjct: 661 AIVKSLVQRHRGDLRIESR 679


>gi|325104316|ref|YP_004273970.1| PAS/PAC sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324973164|gb|ADY52148.1| PAS/PAC sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 586

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 154/365 (42%), Gaps = 15/365 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +     K     I+++SE V        I   N     +   ++ ++  G  I++IA  
Sbjct: 222 ERLMMAKKRIETLINNMSEPVIGLDEKHTILFMNDIALKIAGLQKEKV-IGAPIQHIAEE 280

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLTFV 543
                       L   +      E+K     +++ +D   S  E  IIP+    T     
Sbjct: 281 ND------LIKTLIKDLPEKETHEKKIKSFPIKIYADNKESYFEKEIIPILITPTGEKEE 334

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
               +V   + +T   E     D  K +F+  VS+EL++P+++I     LL   K+G LN
Sbjct: 335 KHIGNVILLQNITPYKEL----DFAKTNFIATVSHELKTPISSIQMSLQLLGNKKVGELN 390

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q   +  I+  +  LL +  ++L++  V++G ++++       +++     +      
Sbjct: 391 AEQESLLHSINDDTGRLLKITGELLNMTQVESGTIQISVVPSEAKEIVEYAVNATKAAAE 450

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  IR ++     L   +AD ++   + + +LSNA+ +S   S + +     +    FSV
Sbjct: 451 QKQIRFEIKIADNLPQVLADNEKTAWVLTNLLSNAIRYSYDNSIISIDVNATDNKVRFSV 510

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I       +F+R+       ++ G GLGLSI + FI   GG +S+ S     +T
Sbjct: 511 TDTGQGISPQYIDKIFDRYFRIPG-TKKEGTGLGLSISKEFIQAQGGEISVKSDLGAGST 569

Query: 784 INCRI 788
            +  +
Sbjct: 570 FSFSL 574


>gi|254446215|ref|ZP_05059691.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260523|gb|EDY84831.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 542

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 137/293 (46%), Gaps = 17/293 (5%)

Query: 503 IITSFDDE---RKSLQ-GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           I++  +DE   R+++Q G  E LS + L  +I+         T  +  +  R    L++ 
Sbjct: 102 ILSGLEDEVIAREAMQHGVQEFLSKNGLSSTILE-------RTISHSIERYRLMAELSKA 154

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +    A + K+ F+  +S+E R+P+  I+G  +LL     G    ++++ +  +   + 
Sbjct: 155 KQKAEAASQAKSDFLAVMSHEFRTPMNGILGGINLLGNVCNG---PQETELLSMMKQCAE 211

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L L+ D+LD++ ++AG M+L Y      DL++ V  +++    E  +++ V  D  L 
Sbjct: 212 SQLTLIGDVLDISKIEAGGMELAYEGFSPRDLISSVLSAVSFSAREKGVKLAVDIDRGLP 271

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              V+D +RL Q+   ++ NA+ F+S+G   I     D     F V + G  I      S
Sbjct: 272 RELVSDARRLRQVLMNLVGNAVKFTSEGEVRIHARKFDGCLVEFRVTDTGIGISPKYIDS 331

Query: 738 VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F+ F         + +G GLGL+I +  + + GG + + S     +     I
Sbjct: 332 IFDTFTQVDSSYSRRYQGTGLGLAICKRLVKMLGGTIRVESKVGRGSDFRFTI 384


>gi|167748521|ref|ZP_02420648.1| hypothetical protein ANACAC_03265 [Anaerostipes caccae DSM 14662]
 gi|167652513|gb|EDR96642.1| hypothetical protein ANACAC_03265 [Anaerostipes caccae DSM 14662]
          Length = 967

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/438 (19%), Positives = 171/438 (39%), Gaps = 32/438 (7%)

Query: 375 KENIFSVYKSSETHKDTWHLP---NGQTLH----VIVTSNPRGGTIWMFENLTVQVDLET 427
           +E + + Y + +   +  +L    +G             NP  G I +F   + + + + 
Sbjct: 242 REKVIADYAAGKVDYNFHYLRKRSDGSVFWSSTNFRSYLNPETGDIIIFFYTSDETEQKM 301

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKL---SNPAFRSLWKTEENRLSPGTHIRNIA 484
           +   L K+     D +++   V      +     +N       K ++          +  
Sbjct: 302 QEKLLSKITDLDYDMIADIDIVKDNYRLLSFDLKANNTIPMQGKFQQEIRGLANRFMD-E 360

Query: 485 ATCSRYYNESDGWDLFAAIIT----SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                Y    D   +   ++     SF  E +  QG L++    V     I     +  L
Sbjct: 361 EARRIYLGNLDYNYMIRKLLEDESYSFMMEMRDQQGNLQVKRCEVF---YIDRDLGRVCL 417

Query: 541 TFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             V+VT+ VR E+     L        +A+  K+ F+  +S+E+R+P+  IIG   +   
Sbjct: 418 ARVDVTEIVRQEQRQKQELAAALAGAEQANAAKSDFLSRMSHEIRTPMNAIIGMCTIAAQ 477

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S      +K    +  I  SS  LL+L+NDILD++ +++G M L    I + + +N +  
Sbjct: 478 SIGN--ETKVEDCISKIGISSRYLLSLINDILDMSRIESGKMLLKNEKIPMEEFINGINS 535

Query: 657 SIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR- 714
               +     +    + D  +   ++ D  +L Q+   I+ NA+ F+ +G  +     R 
Sbjct: 536 ICYAQADAKGVDYDCVVDPMIDDYYIGDAMKLQQVLINIIGNAVKFTEEGGKITFSTLRL 595

Query: 715 ----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLH 768
               ++    F + + G  + E+    +F  F   +        G GLGL+I +S +++ 
Sbjct: 596 KKTKNDVTLRFIINDTGVGMDEEFLPHIFETFSQESTGITSVYGGTGLGLAISKSIVDMM 655

Query: 769 GGHVSISSSDEGVTTINC 786
            G +++ S     +    
Sbjct: 656 DGRINVRSIKGVGSEFTV 673


>gi|332308597|ref|YP_004436448.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175926|gb|AEE25180.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1001

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 6/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A + L + N+ L +A+  K+ F+ ++S+E+R+PLT+IIG+ D +    +    ++Q + 
Sbjct: 398 EANQKLAQSNQELIEANLAKDHFLANMSHEIRTPLTSIIGYADGMLLGDIDK--TEQERV 455

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  +   LL ++NDILDL+ +DA  +        L  LL +++  +  +  +  +  
Sbjct: 456 TSIIYQNGAHLLRIINDILDLSKIDANKLDFKSQPCHLFSLLGQIESVVGKRAKDKGLGF 515

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            V  D  L    + D  RL QI   + +NA+ F+  G  + L           +V + G 
Sbjct: 516 HVNYDFPLPEKIITDATRLKQILFNLTNNALKFTHSGH-ICLDVKAAGSTLTINVVDTGE 574

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ++  + +FN F         Q  G GLGLSI +      GG ++  S     +T   
Sbjct: 575 GISQNDVQKLFNPFTQADSVINRQVGGTGLGLSIAKRLAQGLGGDINAKSQPRKGSTFTI 634

Query: 787 RI 788
            I
Sbjct: 635 TI 636


>gi|227431460|ref|ZP_03913509.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352826|gb|EEJ43003.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 623

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 145/390 (37%), Gaps = 36/390 (9%)

Query: 412 TIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
                 +L+ +++      N         + H+++GV      G + + N A        
Sbjct: 243 LALSVNDLSTRIEESTETVNAERNRLDSVLTHMADGVLAANRRGEVTIINQAAADFV--- 299

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-QGTLELLSDSVLEYS 529
                 G +  +            +G      I+ + +D R  L   + ELL  +    S
Sbjct: 300 ------GVNREDALGQDVVSLLRLEGKRTLRDILENLNDFRVDLSDDSKELLVQTY--VS 351

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +I   +       V + D    +R            D  +  FV +VS+ELR+PLT++  
Sbjct: 352 LIKRQSGFISGLVVVLHDITEQQR-----------IDSERRMFVSNVSHELRTPLTSVRS 400

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           + D L    +         ++  +   +  ++ ++ND+L+L+ +D G M++    I LN 
Sbjct: 401 YVDALAEGAIDD-PEMAQNFLGVVQDETQRMIRMINDLLELSRLDQGTMEVKLEVINLNS 459

Query: 650 LLNEVKQSIATKMHE---------NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           L N V       +            N  I      +      D  +  Q+   I++NA+ 
Sbjct: 460 LFNFVLNRFDMILESDAKNENTITKNYNILREFTKEDVWVEVDPDKFTQVLDNIMNNAVK 519

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           +S  G T+  +  +     I S+ + G  IP     ++FNRF        R   G GLGL
Sbjct: 520 YSPDGGTITARLIKTKTRAILSISDQGLGIPRKDLDNIFNRFFRVDKSRSRAQGGTGLGL 579

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I +  +    G + + S +   +T    +
Sbjct: 580 AISKEVVEKFNGRIWVDSVENKGSTFYISL 609


>gi|54308425|ref|YP_129445.1| putative sensor protein TorS [Photobacterium profundum SS9]
 gi|46912854|emb|CAG19643.1| Hypothetical sensor protein TorS [Photobacterium profundum SS9]
          Length = 983

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 132/285 (46%), Gaps = 16/285 (5%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R+ LQ   E L   V + +         +   V   +  RAE           KA+  K+
Sbjct: 421 RQELQLHKESLERLVAQRTSELEKTNSRLNEEVINHEKARAEAE---------KANRAKS 471

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+  +S+E+R+P+  I+G   LL  +    LN +Q++Y+  I+ S   LL+++NDILD 
Sbjct: 472 AFLATMSHEIRTPMNGILGTASLLGDT---GLNQQQARYLNVINRSGETLLDILNDILDY 528

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG + +      L++L+ +V   + ++    +I++    D  + +    D  R+ Q
Sbjct: 529 SKIEAGHLDIRPVDFSLSELVLDVHNMLESRALAKHIQLVNHIDDSMNNVWLGDVTRIRQ 588

Query: 690 IFSKILSNAMDFSSKGS-TVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           +   ++ NA+ F+ +G  T+ +    D   + +F V ++G  I E     +FN F     
Sbjct: 589 VLINLVGNAIKFTDQGQVTIAVSMNPDMPDELLFEVTDSGIGIDEAEQDILFNAFKQAEE 648

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +   G GLGL+I    +    G + + S+    +     IP +
Sbjct: 649 GRKTIGGTGLGLAISRHIVAAMEGEIGVDSTINVGSCFWFSIPLE 693


>gi|325105694|ref|YP_004275348.1| integral membrane sensor signal transduction histidine kinase
           [Pedobacter saltans DSM 12145]
 gi|324974542|gb|ADY53526.1| integral membrane sensor signal transduction histidine kinase
           [Pedobacter saltans DSM 12145]
          Length = 353

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 123/265 (46%), Gaps = 11/265 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS------FVQHVSYELRSPLTN 586
           L +A       +  + V  E       E   + DE+K        F+ ++S+EL++PL +
Sbjct: 75  LKDALGEYVSPDPINDVEQEVK-EWAKEKKIEIDELKREAIFRKEFLTNLSHELKTPLFS 133

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G+ ++L+ S L  +   Q  +++ IS +   L  L+ D+ +++ +++G + LN     
Sbjct: 134 IGGYLEVLEDSDLTDVEETQR-FLKKISNNVDRLSILIKDLDEISKLESGEIPLNIKKFD 192

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           +  L+ EV + +  +  +++I +       + +FV ADR ++ Q+   ++ N++ +  + 
Sbjct: 193 ITVLIKEVLELMELEAEKHHIELLFKQKYDVPTFVMADRDKIRQVLVNLIGNSIKYGKEN 252

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
            T  +     +   +  V +NG  I E   K +F RF            G GLGL+IV+ 
Sbjct: 253 GTTFVTVFEMHDQILVEVTDNGIGIEEKNLKRLFERFFRTDFSRSRNIGGSGLGLAIVKH 312

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            +  H   +++ S+    +T    +
Sbjct: 313 IVEAHDQAINVRSTPGIGSTFGFTL 337


>gi|167772672|ref|ZP_02444725.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
 gi|167665150|gb|EDS09280.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
          Length = 566

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 158/381 (41%), Gaps = 33/381 (8%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETID----HLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           F  +  Q  L  +    ++ + +TI+    ++ EG+ +   +  I   N +   L    E
Sbjct: 207 FAKIREQNRLIQEQVKRLREERDTINTITSNMKEGMVLLDLERGILSVNHSALMLLDAAE 266

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             +  G +I N++   S    +  G  L  A   +  +                      
Sbjct: 267 G-VYEGKNILNLSR--SELLGDCAGKALAGAAADAVLER-----------DGRACHIFAS 312

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+ +A   +    V      E+          +A++++  F  +VS+EL++PLT+I GF 
Sbjct: 313 PVRDAGGAICGAIVLLLDVTEQQ---------RAEQVRRDFAANVSHELKTPLTSISGFA 363

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++++     + +    ++   I   +  L+ L +DI+ L+ ++   +      + L  L 
Sbjct: 364 EMMENGMADN-SQDVRRFAGRIYTQAQRLIALTDDIIRLSRIERADLT-ENVPVELRALC 421

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +   +++     +  + I V   G       DRQ L ++ + ++ NA+ ++  G  V + 
Sbjct: 422 DRAVETLRFTAEQKQVEIAVT--GGPAPVRGDRQMLDELITNLMDNAVKYNRPGGRVDVS 479

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHG 769
            +  +G     V + G  IP++  + +F RF         Q  G GLGLSIV+  +  HG
Sbjct: 480 LSVQDGLVCLRVADTGIGIPKEHQERIFERFYRVDQSRSKQTGGTGLGLSIVKHVVERHG 539

Query: 770 GHVSISSSDEGVTTINCRIPS 790
           G +++ S     T +  R+P+
Sbjct: 540 GSITLESVPGEGTAVTVRLPA 560


>gi|330465155|ref|YP_004402898.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
            maris AB-18-032]
 gi|328808126|gb|AEB42298.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
            maris AB-18-032]
          Length = 1457

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 149/344 (43%), Gaps = 20/344 (5%)

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            F S+    E  LS    +             +   +   A       E +     L+  +
Sbjct: 942  FASVTPFSELHLSFLERLVATIGIAVNTIQANRRTEELLAQSQRLAHELQEQSAELQRTN 1001

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              + E + +       + T     +  R    L EK + L +A   K+ F+ ++S+ELR+
Sbjct: 1002 AELEEKATLLSEQKGNIETKNREIEMARL--GLEEKAQQLTRASAYKSEFLANMSHELRT 1059

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL +++    LL  +   +L  KQ ++   I  S + LL L++DILDL+ ++AG M +  
Sbjct: 1060 PLNSLLLLARLLAENSERNLTPKQIEFARTIHGSGSDLLRLIDDILDLSKIEAGRMDVEP 1119

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            + +   ++ + V+Q+ A +  E  +  +V ++     + V D QRL QI   +LSNA+ F
Sbjct: 1120 TEVRFEEIRSYVEQAFAPQAEEKGLDFQVRVAKDLPPAVVTDAQRLQQILRNLLSNAVKF 1179

Query: 702  SSKGSTVILKAARDNGDFI--------------FSVKNNGSSIPEDMCKSVFNRFVSNA- 746
            +  G+ V L+ +R     +              F+V + G  I +D    +F  F     
Sbjct: 1180 TDNGA-VTLRISRAPEHAVFDVPALINARQVIAFTVIDTGIGISDDKLSLIFEAFQQADG 1238

Query: 747  -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +  G GLGLSI      L GG +++SS+    +T    +P
Sbjct: 1239 TTSRRYGGTGLGLSISRDLARLIGGTITVSSAPNQGSTFTLYLP 1282


>gi|239933024|ref|ZP_04689977.1| two-component system sensory histidine kinase [Streptomyces
            ghanaensis ATCC 14672]
          Length = 1332

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 14/267 (5%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 738  QNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQ 797

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L+ KQ +Y + I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ 
Sbjct: 798  NPSRNLSPKQVEYAQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEA 857

Query: 657  SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------- 707
            +      + N+   V  + G     + D  RL Q+   +LSNA+ F+ +G          
Sbjct: 858  TFRPMTMQKNLDFTVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELRIEPAT 917

Query: 708  ---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
               V     R      F VK+ G  IPE   +S+F  F         +  G GLGLSI  
Sbjct: 918  DDEVPGSVVRGGSVVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITR 977

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
               +L GG V++ S     +T    +P
Sbjct: 978  EIAHLLGGAVTVDSVAGQGSTFTLFLP 1004


>gi|169334946|ref|ZP_02862139.1| hypothetical protein ANASTE_01352 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257684|gb|EDS71650.1| hypothetical protein ANASTE_01352 [Anaerofustis stercorihominis DSM
           17244]
          Length = 794

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 121/272 (44%), Gaps = 15/272 (5%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y I+        +   + ++    ++ L E      +A+  K+ F+  +S+++R+P+  I
Sbjct: 374 YKIVEDGVKWAFMVLTDESEEQEKKKVLEEALITAEQANRAKSEFLTSMSHDIRTPMNAI 433

Query: 588 IGFTDLLKTSKLGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +G  ++       +L+ K+     ++ I+ SS  L+ L+  +LD++ +++G ++L     
Sbjct: 434 VGMVNI----AYSNLDDKKKVADCLDKITLSSEHLMELIQGVLDMSQIESGKLELCKENF 489

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L  LL E  +    +  E  + + +  +  K      D  R+ QI   +++NA+ F+  
Sbjct: 490 NLTSLLKEAYEIFKGQALEKGLDLTLDMNKIKHSDVNGDMLRINQILMNLINNALKFTPA 549

Query: 705 GSTVILKAA----RDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
           G  V +KA      + G  I   SV +NG  I  +    +F+ F         +  G GL
Sbjct: 550 GGFVEIKAEEVYCEEEGYGIYNISVNDNGIGIAPEFIDKLFDPFERAERSTVSKIEGSGL 609

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSIV   I+L  G + + S     +     +
Sbjct: 610 GLSIVNRLISLMNGTIDVVSEQGKGSCFTVCL 641


>gi|226358131|ref|YP_002787870.1| histidine kinase, hybrid [Deinococcus deserti VCD115]
 gi|226319774|gb|ACO47768.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115]
          Length = 1644

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 18/301 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             S   E +S Q  L   ++  LE     L + Q         +   A  AL EK   L  
Sbjct: 885  QSMAQELQSQQEELRQTNEE-LEQKARLLAD-QNREVEDKNREVESARHALEEKAAQLAL 942

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              + K+ F+ ++S+ELR+PL +++     L+ +  G+L  +Q  Y + I A+   LL+L+
Sbjct: 943  TSKYKSEFLANMSHELRTPLNSLLLLAHQLRDNPDGNLTDQQQAYAKTIYAAGNDLLSLI 1002

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVAD 683
            NDILDL+ +++G +  + + + L  + + V  + A    +  + +++     L  + + D
Sbjct: 1003 NDILDLSKIESGTVSADLTEVPLRSVRDAVDTTFAHVASDKGVSLQLNFSADLPPTLLTD 1062

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTV-------------ILKAARDNGDFIFSVKNNGSSI 730
             +RLLQI   +LSNA  F+ KGS                    R      F V + G  I
Sbjct: 1063 EKRLLQILKNLLSNAFKFTEKGSVTLQVEPALSGWSTEHSTLRRAPSVVAFRVSDTGIGI 1122

Query: 731  PEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              D  + +F  F         +  G GLGL+I      + GG +++ S+    +     +
Sbjct: 1123 AADKQRVIFEAFQQADGTTSRKYGGTGLGLAISRELARILGGEITLQSTPGVGSVFTLYL 1182

Query: 789  P 789
            P
Sbjct: 1183 P 1183


>gi|159900917|ref|YP_001547164.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893956|gb|ABX07036.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 497

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 135/282 (47%), Gaps = 6/282 (2%)

Query: 498 DLFAAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           DL A +  + +  R    +     +S++ +  +++ L  A  M + +N    V   + L 
Sbjct: 183 DLVATVEWAMESHRLAERRAERLRVSEARVARTLLELEGAYEMQSRLNSQLQV-LNKELE 241

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
               A  +A+ +K  F+ ++S+ELR+PL  II FT  L   + G L ++Q +  E +  +
Sbjct: 242 VARTAADEANTLKTRFLANMSHELRTPLNAIINFTQFLGKPRYGDLTARQIELQERVLVN 301

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  LL L+NDILDL+ ++AG M+L+   + L  + N V  +         + ++   + +
Sbjct: 302 SEHLLGLINDILDLSKIEAGRMELHLELLDLQPIFNGVMATAVGLTKSKGLNLESDVEEE 361

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +     D+ R+ QI   +LSNA  F+  G  + L+A   +G    SV + G+ IP     
Sbjct: 362 IPPVRGDKVRVRQILLNLLSNAAKFTDSGG-ITLRAFESDGMVQISVIDTGAGIPAHELP 420

Query: 737 SVFNRF---VSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            VF  F      A   +++G GLGL I    + L GG +   
Sbjct: 421 LVFEEFHQVEQAASAQRQQGTGLGLPISRHLVELQGGTMWAE 462


>gi|329888454|ref|ZP_08267052.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
 gi|328847010|gb|EGF96572.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
          Length = 536

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/366 (23%), Positives = 147/366 (40%), Gaps = 21/366 (5%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                D   + + +   +GRI   + ++ S+       L  G  I  +            
Sbjct: 25  LATFFDVSLDLLVIRDLEGRIVRVSASWASILGYRPEELV-GLPILTLVHPDDMPGTLGS 83

Query: 496 GWDLFAAI----ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             ++        +    +  +   G    L     ++        +      +VT  V A
Sbjct: 84  VTEVETRRPGDPVLGHVNRYRHKDGRYVTLEWRAQKF------GDRIYAVARDVTAKVAA 137

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ERAL E   A   A+  K+ F+ ++S+E+R+PL  +IG  D L  +    L+ +Q++ VE
Sbjct: 138 ERALVEAKAAAETANRAKSDFLANMSHEIRTPLNGVIGVIDALART---PLSPQQAEMVE 194

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            + +SS  L  LV DILD++ +++G M L      LND L      +     E  +  ++
Sbjct: 195 LVRSSSVTLERLVTDILDVSRIESGRMTLETRPFDLNDALIPAIAPLRGLAEEKGLTFRL 254

Query: 672 I-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNN 726
             ++   G F  D  R+ QI   +LSNA+ F+++G   V +         +     V++ 
Sbjct: 255 ERAESACGVFNGDVVRVRQILGNLLSNAVKFTAQGQVSVHVDLLDRGDGAVLLTLEVRDT 314

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G     D    +F RF        RR  G GLGLSI  +   + GG +   S+    +  
Sbjct: 315 GIGFGADHAAQLFQRFSQADASITRRFGGAGLGLSICHALTEMMGGRIEAESAPGEGSRF 374

Query: 785 NCRIPS 790
              +P 
Sbjct: 375 QVELPL 380


>gi|328954299|ref|YP_004371633.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454623|gb|AEB10452.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 591

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 152/378 (40%), Gaps = 36/378 (9%)

Query: 424 DLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            L+ ++ T+++ + E    +  + EGV     + R+   N A   L       ++ G  I
Sbjct: 237 QLDDRFRTILRQRQEQEAILASMVEGVVAVDMNDRLITLNKAGSRLLMVNPE-VAKGQSI 295

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--T 538
           + I           +         T+       L  TL  LS+ +++     L +AQ   
Sbjct: 296 QEIIR-------NQELQRFLQQTRTATIPVEGEL--TLNGLSERIIQLHGSKLLDAQGKV 346

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   + + D  +  R            + I+  FV +VS+ELR+P+T+I GF + L++  
Sbjct: 347 IGVLLVMNDVTKMRRL-----------ERIRRDFVANVSHELRTPITSIKGFVETLQSGA 395

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA----GIMKLNYSTIVLNDLLNEV 654
           +   ++    ++  ++  +  L  ++ D+L L+ ++     G + L +    L  +L   
Sbjct: 396 IYEPDNAV-HFLNIMARQADRLNQIIEDLLTLSRIEQEEEEGKVTLTWKP--LKTVLQAA 452

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q    +  E  I I +     L + + +   L +    ++ NA+ +S   + V + A  
Sbjct: 453 IQVCEVRAAEKQITISLSCPDNLQARI-NPPLLEEAVVNLIDNAIKYSPPETAVAVTAEP 511

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
                +  V++ G  I  +    +F RF        R   G GLGL+IV+     H G V
Sbjct: 512 ATEKVLIRVRDQGRGIALEHLPRLFERFYRVDTSRSRKVGGTGLGLAIVKHIAQAHDGWV 571

Query: 773 SISSSDEGVTTINCRIPS 790
           ++ S+    +     +P 
Sbjct: 572 TVDSTLGQGSVFTLHLPL 589


>gi|317484995|ref|ZP_07943878.1| response regulator receiver domain-containing protein [Bilophila
            wadsworthia 3_1_6]
 gi|316923733|gb|EFV44936.1| response regulator receiver domain-containing protein [Bilophila
            wadsworthia 3_1_6]
          Length = 1459

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 103/591 (17%), Positives = 206/591 (34%), Gaps = 54/591 (9%)

Query: 245  KEEIKKRMISSSALEKNFCETVSTLEHGNNKS-----YKIVRVLNSFGEAGIAIDVSKEI 299
              E   R+ S            +   +G+          +          GI  D+++  
Sbjct: 598  DAETAMRVFSGIQSGSAEVRLRNLKINGDYVWCLLQGQPVYENGALARVVGIIRDITENK 657

Query: 300  TVNDQLTHTYEILH-NLT---VAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSNDE 354
             ++ +      I    L     +I   + +         S    ++I  + +       E
Sbjct: 658  RISQEKERLQRIFDLELRRDYESICQINPSTGRYVMWTPSNASYYDIPTSGI-----FSE 712

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-----PNGQTLHVIVTSNPR 409
             L    S     E         +I ++ K+ E  K+         P+G            
Sbjct: 713  ELAHAISRIVCGEDQETCLKTLSIGNMLKTLEEEKEGTCYYRVLTPDGSLRWKCARYTYF 772

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-------------- 455
            G    +  N+    D+              +    E +     + +              
Sbjct: 773  GDDGSILLNVRDVHDIRIAQQQEENRFRAILRETCEYIIETDVETKSYTLHLPTLINRYP 832

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIR-----NIAATCSRYYNESDGWDLFAAIITSFDDE 510
            ++  +     + +  E  ++P          ++    SR   E     +   + T+    
Sbjct: 833  LEACSDYGSLIARYSERYVAPEDRESFLRAVSLPEALSRMRREGGSCSIKYTVNTNGSPA 892

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI-- 568
             K+   +L    D+  EY +  + +   ++      +   AER      +AL  A++   
Sbjct: 893  YKTWNMSLYRYDDN-REYMLSYILDITKLVLEQQEKER-EAERNRQIIKDALTAAEQASR 950

Query: 569  -KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K+ F+  +S+E+R+P+  +IG T +   S       K +  +  I  SS  LL+L+NDI
Sbjct: 951  AKSDFLSRMSHEIRTPMNAVIGMTTIAAASL--DNRDKLTDCLGKIGLSSRYLLSLINDI 1008

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
            LD++ +++G + +          +  +   I  +    NI   +  +G +   +  D  R
Sbjct: 1009 LDMSRIESGKVSIINEEFDFRSFVEGISSLIYPQAKNKNIVFDLNIEGVVDERYRGDPLR 1068

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            L Q+   ILSNA+ F+ +  +V L        RD     F V++ G  + + + + +F  
Sbjct: 1069 LNQVLINILSNALKFTPEWRSVHLSIRETRRVRDRAYLQFIVRDTGIGMEKGLLERIFEP 1128

Query: 742  FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F     +      G GLGL+I  + I+L  GH+S+SS+    +     +P 
Sbjct: 1129 FEQGGASISHSYGGSGLGLAISSNLISLMNGHISVSSTPGVGSEFVVELPL 1179


>gi|241113448|ref|YP_002973283.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240861656|gb|ACS59322.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 2099

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 139/306 (45%), Gaps = 22/306 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              +      +++ LQ T E L     +         + +       +  +A RAL EK  
Sbjct: 1363 QQLAAELQTQQRELQQTNEQLGQKAQQL------EERNVEVEAKNQEIEQARRALEEKAT 1416

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ KQ ++ + I  + T L
Sbjct: 1417 ELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEFAKTIHGAGTDL 1476

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
            LNL++DILDL+ +++G + ++   I +++LL  + +    +    ++   V     +  S
Sbjct: 1477 LNLISDILDLSKIESGTVSVDAEEIFVSNLLEMMARPFRHEAENRDLSFSVDVGADVAKS 1536

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNN 726
             + D +RL QI   +LSNA  F+++G   +  A+  +G                F V + 
Sbjct: 1537 LITDSKRLQQILKNLLSNAFKFTAQGGVTLRVASATSGWSSDHPSLKHAPSVIAFEVVDT 1596

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP +  + +F  F        R   G GLGL+I     NL GG + + S+    +T 
Sbjct: 1597 GIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSTPGIGSTF 1656

Query: 785  NCRIPS 790
               +P 
Sbjct: 1657 VLYLPL 1662


>gi|5225252|gb|AAD40816.1|U59310_1 histidine kinase [Nectria haematococca mpVI]
          Length = 801

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  
Sbjct: 210 QRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNI 266

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  LL +++DILDL+ ++A  M +      L   + +  +++A K +E  + +   
Sbjct: 267 VNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFDALKTLAVKANEKFLDLTYK 326

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-------FSV 723
            D  +    + D  RL QI   ++ NA+ F+  G   + +K   +  +         F V
Sbjct: 327 VDSSVPDYVIGDSFRLRQIILNLVGNAIKFTEHGEVSLTIKERVEQRNVRPGEYAVEFIV 386

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG + + S     
Sbjct: 387 EDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRVVNLMGGDLWVISEQGKG 446

Query: 782 TTINCR 787
           +  +  
Sbjct: 447 SEFHFT 452


>gi|110800980|ref|YP_696200.1| sensor histidine kinase/response regulator [Clostridium perfringens
            ATCC 13124]
 gi|110675627|gb|ABG84614.1| sensor histidine kinase/response regulator [Clostridium perfringens
            ATCC 13124]
          Length = 1093

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLN 603
              +  +  +   +  + + K  + KN +  ++S+ELR+PL  I+    L+K  +K   L 
Sbjct: 837  YIEKEKLYKEAADLKDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKEDCLG 896

Query: 604  SKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + Y   +  ++  LL ++NDI+D + +++G  KLN     +  L+ +   S+   +
Sbjct: 897  KYQVEDYTNTLRNNADHLLKIINDIIDSSKIESGAYKLNIEKQDIVSLVEDTALSLKAYI 956

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIF 721
             ENN+ I +  + +      D+  + +    +LSNA+ ++    T+ +     +N     
Sbjct: 957  EENNLDIIIDPEIEELDVECDKNEIERCVINLLSNAIKYTHGYGTIEVFIRECENETVEI 1016

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            ++K+ G  I ++  K +F+RFV      + Q R  G+GL++V+S I LH G + + S   
Sbjct: 1017 AIKDTGVGISKEQQKIIFDRFVQADSISKKQYRSSGIGLTLVKSIIELHHGTIRVESELN 1076

Query: 780  GVTTINCRIPSKE 792
              +T    +P ++
Sbjct: 1077 KGSTFIITLPIRQ 1089


>gi|120598068|ref|YP_962642.1| hybrid sensory histidine kinase BarA [Shewanella sp. W3-18-1]
 gi|146293861|ref|YP_001184285.1| hybrid sensory histidine kinase BarA [Shewanella putrefaciens
           CN-32]
 gi|120558161|gb|ABM24088.1| Hpt sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|145565551|gb|ABP76486.1| Hpt sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
          Length = 933

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y+  I
Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYINTI 340

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+T LL ++NDILD + ++AG M L      L + L +    I+       + + V  
Sbjct: 341 ERSATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVVDI 400

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF---SVKNNGS 728
              +      D  R+ QI + ++ NA+ F+  GS  V L+    + + +     V + G 
Sbjct: 401 APNVPDHVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDTGI 460

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +  +SS +  +    
Sbjct: 461 GIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWF 520

Query: 787 RIPS 790
            +P 
Sbjct: 521 TLPL 524


>gi|291441377|ref|ZP_06580767.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291344272|gb|EFE71228.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1334

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 14/267 (5%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 740  QNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQ 799

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L+ KQ +Y + I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ 
Sbjct: 800  NPSRNLSPKQVEYAQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPELVTLRQLIEYVEA 859

Query: 657  SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-------- 707
            +      + N+   V  + G     + D  RL Q+   +LSNA+ F+ +G          
Sbjct: 860  TFRPMTMQKNLDFTVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELRIEPAT 919

Query: 708  ---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
               V     R      F VK+ G  IPE   +S+F  F         +  G GLGLSI  
Sbjct: 920  DDEVPGSVVRGGSVVAFRVKDTGIGIPEQHLESIFGAFQQADGTTSRKYGGTGLGLSITR 979

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
               +L GG V++ S     +T    +P
Sbjct: 980  EIAHLLGGAVTVDSVAGQGSTFTLFLP 1006


>gi|288905746|ref|YP_003430968.1| essential two-component sensor histidine kinase [Streptococcus
           gallolyticus UCN34]
 gi|306831844|ref|ZP_07465000.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978779|ref|YP_004288495.1| two-component sensor histidine kinase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732472|emb|CBI14044.1| conserved essential two-component sensor histidine kinase
           [Streptococcus gallolyticus UCN34]
 gi|304426042|gb|EFM29158.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178707|emb|CBZ48751.1| two-component sensor histidine kinase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 450

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 141/385 (36%), Gaps = 30/385 (7%)

Query: 416 FENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L  +     K      + ++++GV      G I + N   +      E   
Sbjct: 75  LNDLSTVFRLAQENLAQEKNRLASILSYMTDGVLATDRAGNITMINQTAQQQLNL-EREE 133

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +   +I +I  + S Y       DL +       + R      + L     + +++    
Sbjct: 134 ALQMNIVDILGSDSTY----SYHDLVSKTPEIVLNRRDETGEFITLR----IRFALNRRD 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+            D  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLIAVLHDTTEQEKE-----------DRERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +++D+L+L+ +D   ++L          +  +
Sbjct: 235 DEGALKEDIAP--SFIKVSLDETNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSI 292

Query: 655 KQSI-----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                       +      I      K      D  ++ Q+   IL+NA+ +S  G  + 
Sbjct: 293 LNRFDQIKSQHTISGKQYEIVRDYPIKSIWLEIDPDKMTQVLDNILNNAIKYSPDGGKIT 352

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +         I S+ + G  IP+     +F+RF          + G GLGL+I +  +  
Sbjct: 353 VSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQ 412

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           H G +   S+    +T    +P ++
Sbjct: 413 HKGFIWAQSTYGKGSTFTIVLPYEK 437


>gi|164686079|ref|ZP_01947585.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212219130|ref|YP_002305917.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|164601638|gb|EAX31792.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212013392|gb|ACJ20772.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 551

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/414 (22%), Positives = 180/414 (43%), Gaps = 29/414 (7%)

Query: 393 HLPNGQTLHVIVTSNP----RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           H  + + +   V S P    + G +   + ++  V+    +          + ++ + + 
Sbjct: 4   HRRSIKRISWSVVSLPPRYGQKGYMLTGQVISKSVNASQIF------LENILYNIPQYIL 57

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
               +      N  F  L   E      G    ++    S+  N     D+         
Sbjct: 58  WKDRNFVYLGCNHNFAKLVGFETPESIIGKTDFDL--WRSQGANSIRPTDVEVLEGKQLV 115

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALR 563
           D  +SL   L    + V   S + L + +      ++   ++T+  + E+ L E      
Sbjct: 116 DVEQSLS--LPNGKEGVFLISKVLLRDERNEIIGILVVGTDITERKQNEQKLIEAKLQAE 173

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +D  K+ F+ ++S++LR+P+  I+G   +    +      KQ   +  +SAS+ +LL L
Sbjct: 174 LSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEH---TKKQEPLINDLSASANLLLGL 230

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           V DILD A ++ G ++L YST  L  L+  + ++ + +  +  I+I V  D  L  S V+
Sbjct: 231 VEDILDFARLEVGKLELKYSTFNLRQLVIFLVKTFSFQTQQKQIKINVYYDASLPDSIVS 290

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVF 739
           +   + +IF  ++ NA+ F+ KG  + +    +          VK+ G  IP+D   ++F
Sbjct: 291 EPNYIRRIFLNLIGNAVKFTEKG-QIDVTVNLEGNKPAMLKILVKDTGLGIPKDKLNTIF 349

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +RF      +  +  G+GLGLSI++  ++  GG V +SS +   +T    IP +
Sbjct: 350 DRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIENEGSTFTLTIPCE 403


>gi|153869309|ref|ZP_01998953.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074169|gb|EDN71053.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 589

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 155/366 (42%), Gaps = 16/366 (4%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I  +++G+ VF   G++   NPA  +        L   T++ +      +   +     
Sbjct: 77  VITAMADGLCVFNHQGQLLFLNPAAENYLGIPNQELQH-TNVLDCFELHEKVNPDVRLAT 135

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSII--PLPNAQ----TMLTFVNVTDSVRAE 552
                  +           L+  +   L  S I  P+   Q     +L F +++D    E
Sbjct: 136 PELLQRLNCGHSFNDSNALLQCHNQQHLPVSCIFNPIIENQQVLGIVLLFQDISDIKDVE 195

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-------K 605
             L    EA  KA + K+ F+  +S+ELR+P+  I+G+++LLK     +L          
Sbjct: 196 AELIAAKEAAEKASQAKSLFLSSMSHELRTPMNAILGYSELLKEDLGVALEEFELEHVED 255

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             QYV  I  +   LL L+N +LDL  ++AG +++    + L +L+ E    ++ +  + 
Sbjct: 256 MQQYVGNILHAGWHLLELINKVLDLTRIEAGKLEVTIEKVELIELMKECVSFVSPQAEKR 315

Query: 666 NIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSV 723
            I I+  +      + + DR RL Q+F  +LSNA+ ++    +V +   +         V
Sbjct: 316 AITIENKTAEIHPVYALVDRGRLKQVFINLLSNAVKYNRDKGSVTINLTQSTLEYVRIEV 375

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  +  +    VF+ F   +      G G+GL+I +  + +  G + + S  +  +T
Sbjct: 376 ADTGVGLTTEQKAKVFDPFTRLSGLNLVEGTGIGLTITKRLLEIMDGRIGVESEIDIGST 435

Query: 784 INCRIP 789
               +P
Sbjct: 436 FWVEVP 441



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--ELLEFLRSANKL--PEQLN 370
           +   + +F+    L F N +      I    L      D  EL E +    +L  PE L 
Sbjct: 81  MADGLCVFNHQGQLLFLNPAAENYLGIPNQELQHTNVLDCFELHEKVNPDVRLATPELLQ 140

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
                 +        + H    HLP     + I+ +    G + +F++++   D+E + 
Sbjct: 141 RLNCGHSFNDSNALLQCHNQQ-HLPVSCIFNPIIENQQVLGIVLLFQDISDIKDVEAEL 198


>gi|119511775|ref|ZP_01630877.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
 gi|119463548|gb|EAW44483.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
          Length = 587

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 18/256 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    +   +A  +K+ F+ +VS+E+R+PL  +IGF  L+    +     +Q Q+   
Sbjct: 323 KELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLILEG-MADDPEEQHQFTSE 381

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S  LLN++NDILD+A ++AG M+L  S + LN+L  +V+  +  +    N+  ++ 
Sbjct: 382 AHHLSIHLLNIINDILDIAKIEAGKMELVCSPVKLNELFEDVENFLRPQAESRNLSFRMH 441

Query: 673 --SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----------ARDNGDF 719
                       + QRLLQ+   + +NA+ F+ +G  + + A            +  G  
Sbjct: 442 MLPTSDEIIVQGNYQRLLQVMLNLANNAIKFTQEGG-ITVSADLVLKQVEFQKQQFPGMV 500

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  +  D    +F  F  V  +   Q  G GLGL+I +  I   GG V   S 
Sbjct: 501 RVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLIEAMGGEVHFYSL 560

Query: 778 DEG-VTTINCRIPSKE 792
            EG  +T+   +P  +
Sbjct: 561 GEGLGSTVTFTVPLYQ 576


>gi|116333281|ref|YP_794808.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116098628|gb|ABJ63777.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
          Length = 447

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 164/393 (41%), Gaps = 28/393 (7%)

Query: 401 HVIVTSNPRGGTIWMFENL--TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
           HV+++       + +  N   T Q  ++ +     +     +D+L  GV V     +++L
Sbjct: 75  HVLLSPRDPFYRLALQINYLQTHQRKVQRQVAGQNQEFATLLDYLPIGVMVIDRYRKVEL 134

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +NPA                 ++   +     + +       A++I S   ER++   TL
Sbjct: 135 ANPAMEQF-------------LQQPISPRRHPFTQDVRQFELASLINSALSERQTQHQTL 181

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +L   S  E ++    +A+ + T  +  D  +    L +  E     ++++  F+ + S+
Sbjct: 182 KLP-GSPHERTV----DARAIYTATSQ-DYFQVLVLLYDVTEV-YAVEQMQMDFMSNASH 234

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+T I GF   L          K  ++++ I   S  L+ L+ND+L ++ +++G  
Sbjct: 235 ELKTPVTAISGFAKTLLAGAKDD-PEKSVEFLQIIDQQSERLVELINDVLTISHIESGN- 292

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            +  +T+ L  L+      +      N+I +      +L     D+++L QI   +LSNA
Sbjct: 293 NVEMTTVPLGHLVASQVNLLTPLATVNHITLHNQVASEL-QVTTDQRKLDQILKNVLSNA 351

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVG 755
           + ++     V + A     D+   V++ G  I     + VF RF         +   G G
Sbjct: 352 IKYNRPQGRVTVTATVTAHDWQLIVQDTGIGIAPQDQQRVFERFYRADVSHSNQLVSGTG 411

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+IV   +    G + + S     TT+    
Sbjct: 412 LGLAIVRELVQSLNGKIDLQSELGTGTTVTMTF 444


>gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus LGP32]
 gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio splendidus LGP32]
          Length = 1129

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 12/290 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ E         + +L      +     + + ++NE L
Sbjct: 403 INTERKDEIGRLAVSFERMQRSIRE---------KMLLIKSQNDELEDNLKTIQKQNEEL 453

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ I  S   L  
Sbjct: 454 QLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPIPANQKYQLDIIINSGQRLAT 513

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LD   +  G + +N S + L+   + V +     +    IRI       LG   +
Sbjct: 514 LVDDLLDYHKMRYGSLDINKSAVDLSAATSLVLELSHHLLGNKPIRIINQVPSDLGLVSS 573

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+   ++ NA+ ++S+G  +++ A+  + +    V + G  IP +  + +F   
Sbjct: 574 DPQRLEQVMYNLVGNAIKYTSEG-KIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPL 632

Query: 743 VSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +         R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 633 IQAGQDSSNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPL 682


>gi|317048907|ref|YP_004116555.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
           At-9b]
 gi|316950524|gb|ADU69999.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
           At-9b]
          Length = 950

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 128/254 (50%), Gaps = 7/254 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   V+V+  VR E++L E  +A  +A   K+ F+  VS+ELR+PL  IIG  DLL+T  
Sbjct: 441 ICVLVDVSARVRMEQSLQEMAQAAEQASASKSMFLATVSHELRTPLYGIIGNLDLLQTK- 499

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L       V  ++ SS++LL +++DILD + +++  +K+        +++N +  + 
Sbjct: 500 --ALPKGVDSLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVINHIVGNY 557

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            + +    + + V  +  +  +   D  RL Q+ S +L+NA+ F+  G  +IL A    G
Sbjct: 558 LSLVVRKRLALYVFIENDVPLALEGDPLRLQQVISNLLNNAIKFTHTG-CIILHAYEHEG 616

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  IP      +F+ F       +   +G GLGL+I E  IN+  G + + 
Sbjct: 617 YLAFRVRDTGVGIPAKEVTRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVD 676

Query: 776 SSDEGVTTINCRIP 789
           S     +    RIP
Sbjct: 677 SEPGMGSQFVVRIP 690


>gi|188992549|ref|YP_001904559.1| Two-component system sensor/response regulator fusionprotein,
           probable [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734309|emb|CAP52519.1| Two-component system sensor/response regulator fusionprotein,
           probable [Xanthomonas campestris pv. campestris]
          Length = 1046

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y 
Sbjct: 348 AQGQLVRNSNELSTASRYKSEFLANMSHELRTPLNSSLILAKLLADNKDHTLTAEQVKYA 407

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L+  T+ ++ ++  ++ +      +  ++++
Sbjct: 408 QAIHSSNNDLLALINDILDLSKIEAGHVELSDDTVAMSSVVQRLRDTFEPLARQKGLQLE 467

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D    +  V D QRL QI   +L+NA+ F+  G   +   +  NG   F V + G  
Sbjct: 468 ISADAAAPTQLVVDNQRLQQILKNLLANAIKFTEHGQVSLAVQSHGNGRVRFVVCDTGIG 527

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 528 IAREQNEVIFEAFRQADGSTRRRYGGTGLGLSISRDLALRMGGSISVDSEPGRGSCFTLE 587

Query: 788 IP 789
           +P
Sbjct: 588 LP 589


>gi|167621587|ref|YP_001672095.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351710|gb|ABZ74436.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 1069

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 88/433 (20%), Positives = 164/433 (37%), Gaps = 30/433 (6%)

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTL 432
           E +F + ++    +D        T +++V  +  G     +    ++T Q   +      
Sbjct: 505 EAVFRLIRADGQLRDI-------TGNMLVQKDADGQVIAVVGTMSDVTEQQHAQAALAQS 557

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                   ++ S+ +      G++   +P+           L       NI    +    
Sbjct: 558 EARYRLLAENASDLIMHSDVKGQVTYVSPSILPTTGYAPEALVG----TNILDWIAPEDV 613

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL----PNAQTMLTFVNVTDS 548
                 +     +   +   +++  +       L     P     P    +    +V   
Sbjct: 614 PGVQAAVAKQFKSRGAEPPIAVEYRVRHKDGRELWLEARPTLAFDPETGAITGITDVVRD 673

Query: 549 VRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + A R     L         A  +K+ F+ ++S+ELR+PLT ++GF+ L +      L+ 
Sbjct: 674 ISARRVLEAELRAARAEAEAAAAVKSEFLANMSHELRTPLTAVLGFSRLAEEQP--ELSD 731

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
               Y++    +   LL  VNDILD + ++AG +++    +    L  E     AT+  E
Sbjct: 732 TTRGYLKRACNAGQALLLTVNDILDFSKLEAGQVEIAPRPMSPAKLATETLDLFATQAAE 791

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIF 721
             I + +     L  +  AD  R+ QI   ++ NA+ F+  GS V + A  +   G   F
Sbjct: 792 KGIALHLGGLETLPRTVRADPDRVRQILLNLIGNAVKFTMVGS-VRVDAIFEPLGGFLSF 850

Query: 722 SVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G  +PED    +F RF  V  +   +  G GLGL+I +      GG +   S   
Sbjct: 851 AVTDTGPGVPEDRADQLFQRFSQVDASSTRKHGGTGLGLAICKGLAEAMGGDIGAQSKVG 910

Query: 780 GVTTINCRIPSKE 792
             +     IP+ E
Sbjct: 911 EGSCFWFTIPAPE 923


>gi|68477999|ref|XP_717003.1| hypothetical protein CaO19.5181 [Candida albicans SC5314]
 gi|68478134|ref|XP_716936.1| hypothetical protein CaO19.12648 [Candida albicans SC5314]
 gi|46438625|gb|EAK97953.1| hypothetical protein CaO19.12648 [Candida albicans SC5314]
 gi|46438696|gb|EAK98023.1| hypothetical protein CaO19.5181 [Candida albicans SC5314]
          Length = 1081

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 14/263 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A        V +   + +  T   EA   A+  K+ F+ ++S+E+R+PL  IIG T L 
Sbjct: 467 DALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLS 526

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L   Q + +  +   +  LL +++DILD++ ++A  M +      L   +   
Sbjct: 527 LDTE---LTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 583

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +++A K  E N+ +    D     + + D  RL Q+   +  NA+ F+ +G  V +   
Sbjct: 584 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEG-KVSVSVK 642

Query: 714 RDNGDFI-------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           + +   +         V + G  I +D    +F+ F        R   G GLGLSI +  
Sbjct: 643 KSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 702

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           I+L GG + ++S     +     
Sbjct: 703 IHLMGGEIWVTSEYGSGSNFYFT 725


>gi|149182950|ref|ZP_01861407.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148849342|gb|EDL63535.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 466

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 116/229 (50%), Gaps = 4/229 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L + +  +  F+Q+VS+ELR+PL+ + G+T+ +      S   ++ +Y+  I   +  L 
Sbjct: 232 LEEVENSRREFLQNVSHELRTPLSYMRGYTEAMLEGMTTS-GEEREKYLRIIHNETARLT 290

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LVND+LDLA ++     +    I    L+ +V +       + +I + +  D ++    
Sbjct: 291 RLVNDLLDLAQLEGESYPMRKEPIPFAQLVMDVTERFKFHAEQKHIHLGLQLDEEVI-IE 349

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+ S +L NA+ ++ +   V+++  +++   + +VK+ G  IPE+  +++ +R
Sbjct: 350 GDADRLEQVISNLLDNAIRYTPEAGEVMMELKQNDHLAVLTVKDTGCGIPEEDLENIMDR 409

Query: 742 FVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F            G GLGL+IV+  +  HGG + + S     T+I+   
Sbjct: 410 FYRVHKPRTRNEGGFGLGLAIVKQIVWKHGGTIDVQSQPGKGTSISLTF 458


>gi|331266319|ref|YP_004325949.1| signal transduction histidine kinase [Streptococcus oralis Uo5]
 gi|326682991|emb|CBZ00608.1| signal transduction histidine kinase [Streptococcus oralis Uo5]
          Length = 449

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 144/380 (37%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   I     D +      L L     + ++++   
Sbjct: 135 LNKSILELL-----KIEDEYELRDLITQIPELTIDSQDVNGEYLSLR----VRFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L   +     +++     +  ++ +V D+L L+ +D    +L+   I     +  +
Sbjct: 235 DEGAL--YDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNTTSQLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   ++  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRSQDEEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+K+ G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|325292298|ref|YP_004278162.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
 gi|325060151|gb|ADY63842.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
          Length = 514

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 129/257 (50%), Gaps = 3/257 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +    +VT+     R +  K      A++ K+ F+  VS+ELR+PL  ++GF+D+L  
Sbjct: 211 RVVAQLSDVTEMELLRRDVARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAG 270

Query: 597 SKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              G L N +Q +YV  I  S   LL++VN +LD++ ++AG  +L   +  + + ++  +
Sbjct: 271 EYFGRLENDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEAGRYELMMESFPIGETISSCE 330

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             +  +  E  + +       +G   AD++ + Q+   +  NA+ F+  G  V + AAR+
Sbjct: 331 AMLGLQAKEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAARE 390

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +V + G  I  D  + +   F  V N +  +  G GLGLS+V+  + LHGG  +
Sbjct: 391 GRMLKLTVSDTGIGIASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFA 450

Query: 774 ISSSDEGVTTINCRIPS 790
           I+S     T +   +P+
Sbjct: 451 ITSQPGAGTVVTIMLPA 467


>gi|222151605|ref|YP_002560761.1| hypothetical protein MCCL_1358 [Macrococcus caseolyticus JCSC5402]
 gi|222120730|dbj|BAH18065.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 570

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 154/390 (39%), Gaps = 43/390 (11%)

Query: 418 NLTVQVDLETKYNTLVKVQGE--------------TIDHLSEGVAVFGPDGRIKLSNPAF 463
           N+T   DL    N L +   +              T+ ++     +    G + ++N  F
Sbjct: 200 NVTETKDLFISMNILARTLQDFMNEQKLQRNRLETTLQNIPSATLLVNNYGEVVIANETF 259

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--- 520
             L            H   +           +  DL   I  +   E K +  T+E    
Sbjct: 260 --LNFFNRGNKIKKAHYDTVI----------EHKDLKRMIKEAIATE-KPINETIEHNVN 306

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +     + +++P+ + +       V         +      L+  ++++  FV +VS+EL
Sbjct: 307 VHKKYFDAAVVPVLSKKRKRIEGIVI--------VLHDITQLKILEQMRKDFVANVSHEL 358

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+I GFT+ L        ++    +++ I   S  +  LV+++L+L+ ++      
Sbjct: 359 KTPITSIKGFTETLLDGAKEDKDT-LEMFLDIILKESNRIQVLVSELLELSKIEQAN-HF 416

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           N   + L   +    + +     + NI   +  +  L   +A+  +L Q+   +LSNA++
Sbjct: 417 NMVKVNLPQKVFNSVEVVYPLAEKKNINFNLELEKNL-FVLAEPSKLKQVMINLLSNAIN 475

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGL 758
           +S + + V +KA     + I  + + G  I  +    +F RF            G GLGL
Sbjct: 476 YSPEDAEVTVKAYLKADECIVEIIDQGIGIAPEETTRIFERFYRVDKARSRDSGGTGLGL 535

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +IV+  I +  G + + S     +T   ++
Sbjct: 536 AIVKHIIEVFNGEIDVESELGKGSTFRIKL 565


>gi|90020053|ref|YP_525880.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89949653|gb|ABD79668.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 498

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 132/281 (46%), Gaps = 6/281 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +   +E L+ S L        +         + +   A+       EA   +++ K+ F+
Sbjct: 217 IASEVEQLTGSKLVKRDGDEIDGIQANFLTMLQEKHEADVEREMALEAAEASNQAKSDFL 276

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PL +IIGF+  +  ++  +L+ +Q   +  IS S   LL L+ND+LDL  +
Sbjct: 277 ANMSHELRTPLNSIIGFSKRILKTQ-ENLDERQVHSLGVISRSGEHLLQLINDVLDLTKI 335

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           DAG M+++     L  +     +      H   +R+ + +   L   V D  R+ Q+   
Sbjct: 336 DAGRMEISPRPTDLTQVCRYAIEDQQEAAHSKGLRLTLHAPETLVGEV-DELRIRQVMLN 394

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           ++SNA+ +S +G  +++     +      V+++G  I  +  K +F RF     + +   
Sbjct: 395 LVSNAVKYSEQGE-IVVALRYVDDAIEICVEDSGIGIKAEDQKRLFKRFEQFDMQSRMQI 453

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            RG GLGL IV  F+ LH G + + S     +     +PSK
Sbjct: 454 GRGSGLGLYIVNEFVRLHKGWLKVESEYGRGSRFYVYLPSK 494


>gi|225175428|ref|ZP_03729423.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169180|gb|EEG77979.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 546

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 130/283 (45%), Gaps = 10/283 (3%)

Query: 515 QGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           QG + +L +     S  +  +             +    +  L   N  L K + +++ F
Sbjct: 260 QGEIRILEERFRTMSRELAGIYQGLEQKVKERTVELEEEKEKLARINHDLEKMNRLQSEF 319

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  VS+ELR+PL+ I+ F +LL+         ++ Q +  + +SS  LLN+VN++LD A 
Sbjct: 320 LASVSHELRTPLSCILAFIELLEAPAFAH---QRQQNLADLKSSSEKLLNMVNNLLDTAK 376

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++AG ++ +      ++++    ++      E ++ +    +  L     D +R+ Q+  
Sbjct: 377 LEAGAIEPDIQEHRADEIVQGTIKAFMPLAREKSLTVTSDIEPGLPRVKCDVERVRQVLV 436

Query: 693 KILSNAMDFSSKGSTVILKAARDN---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            +L NA+ F+  G  + ++   +       +F V++ G+ I  +  + +F RF   A   
Sbjct: 437 NLLGNAVKFTDPGGRITVRVNSEGKTQQYVVFRVEDTGAGISREEKEVIFQRFRQGAVPV 496

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++  G GLGL + +  I + GG + + S     T    R+P+
Sbjct: 497 NKKQAGSGLGLYLSKGLIEMQGGEIGLESEPGQGTAFWFRLPA 539


>gi|218899824|ref|YP_002448235.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218544331|gb|ACK96725.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 484

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 131/289 (45%), Gaps = 7/289 (2%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           ++ S       L+G  E + +  L++ + P+ +   +       + +R  + L E  E  
Sbjct: 192 VLRSVIKPIFVLKGATEKIKEGNLDFQM-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQ 248

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            + +E +   + ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  
Sbjct: 249 TQYEENRKELISNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDT 307

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L++++   + +D   +   + T+ LN  + E+ + +   + E  I I +          A
Sbjct: 308 LIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHSSPLYVTA 367

Query: 683 DRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           D +++ ++ S ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F R
Sbjct: 368 DCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDTLPYIFER 427

Query: 742 FVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           F            G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 428 FYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|170697003|ref|ZP_02888099.1| histidine kinase [Burkholderia ambifaria IOP40-10]
 gi|170138177|gb|EDT06409.1| histidine kinase [Burkholderia ambifaria IOP40-10]
          Length = 1026

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 159/374 (42%), Gaps = 24/374 (6%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +      +    I     G+ +    DG   + N A  +  +              +   
Sbjct: 391 RLIESEALNRTLIRTAPAGLVLLSFADGETIMRNDALLAYEQ--------DASGEPLGKR 442

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-EYSIIPLPNAQTMLTFVNV 545
             R Y +          +T      ++  GT  L +  V   Y  I +     + T +++
Sbjct: 443 LWRAYRDGAPPGNARTRVTRELAVERAGYGTAYLDAHIVRTRYRGIDV----LLCTLLDI 498

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T   +AE  L E  EA   A++ K++F+  +S+E+R+PL  IIG  +L++ +++    + 
Sbjct: 499 TTRKQAEEKLREAREAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQMA---AP 555

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + +  I +SS  LL ++ND+LDL+  ++  M L      L  ++NEV           
Sbjct: 556 LRRRLGTIMSSSDALLRVINDVLDLSKAESNQMALESIPFDLRRVVNEVAAIFRPLADAK 615

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR---DNGDFI 720
           ++ +       L + +V D  RL Q+ S ++SNA+ F+ +G  T+ ++ A+         
Sbjct: 616 SLVLTCRIAPDLANGYVGDATRLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAGPAGRCVE 675

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  IPED   ++F+ +V        +  G GLGL +    + L GG +++ S  
Sbjct: 676 IAVSDTGIGIPEDGLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRL 735

Query: 779 EGVTTINCRIPSKE 792
              T     +P  E
Sbjct: 736 GEGTIFVAALPLPE 749



 Score = 38.0 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 86/299 (28%), Gaps = 44/299 (14%)

Query: 47  QRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIP 106
            R +           L      L     +L   N   +VW   +  P I G + +     
Sbjct: 224 ARQNTIALERRFDPVLG--RSVLRMVQWVLGA-NGRPVVWFVINSPPPIEG-ILRSPGAG 279

Query: 107 QTDTDLLSFENWL------------KFHHYIKLSKATEKLRKEGQSF----------DLV 144
           +    + S  N L               H           R+ G +F          ++V
Sbjct: 280 REYALVDSSGNLLLGRQPDSTMVARALEHARHDDGERAAARRVGINFVVSDRVPRSDEVV 339

Query: 145 AETQNDCAI--KIEGRVS-------GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
             T +  A+   +  R S        + A L I  +      L     +  +L    ++ 
Sbjct: 340 MATISWRAVLSDVALRASLTVAPALFAIALLWIAIVKFDRRALRPANRRAIRLIESEALN 399

Query: 196 KVLFDSLDF-LVWHRDQAGDILWANIS-YKKNTETEGIVFQKAIGESRKLFKEE--IKKR 251
           + L  +    LV      G+ +  N +      +  G    K +  + +        + R
Sbjct: 400 RTLIRTAPAGLVLLSFADGETIMRNDALLAYEQDASGEPLGKRLWRAYRDGAPPGNARTR 459

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
           +    A+E+    T     H     Y+ + VL         +D++      ++L    E
Sbjct: 460 VTRELAVERAGYGTAYLDAHIVRTRYRGIDVLL-----CTLLDITTRKQAEEKLREARE 513


>gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium
           sp. Marseille]
 gi|151282246|gb|ABR90656.1| sensory box histidine kinase/response regulator [Janthinobacterium
           sp. Marseille]
          Length = 702

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
              V   R L+   +    A+  K+ F+  +S+E+R+P+  ++G   L       + +  
Sbjct: 309 HQVVERTRDLSIAKDEAESANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAE---TSDRT 365

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +++E    S+  LL+++NDILD + +++G ++   +   L   ++ V   +A++  + 
Sbjct: 366 QREHLETAQYSAEALLSILNDILDFSKLESGNLQFEAAQFDLLKTMDSVINLMASRSCDA 425

Query: 666 NIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFI 720
           ++ + V    ++    V D  RL Q+   +++NA+ F+ +G       +L          
Sbjct: 426 SLALAVECPAEIPRMLVGDANRLRQVLLNLINNALKFTEQGGVTLKVALLNLNAGQARMR 485

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
           FSV ++G  I  +    +F  F    +   RR  G GLGLSI +  +++ GG + + S++
Sbjct: 486 FSVIDSGIGIAPEAQARLFQAFSQADNSISRRFGGTGLGLSICKKIVDMQGGSIGVHSAE 545

Query: 779 EGVTTINCRI 788
              +     +
Sbjct: 546 GKGSEFWFEL 555


>gi|291523440|emb|CBK81733.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 986

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/263 (26%), Positives = 139/263 (52%), Gaps = 11/263 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L   + T   +  +AL+E   A   A+  K+ F+ ++S+++R+P+  IIGFT L  ++
Sbjct: 443 YILVMSDRTSDWKMNQALSEAVHAAETANRAKSIFLSNMSHDIRTPMNAIIGFTTLAVSN 502

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  +   Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+++K  
Sbjct: 503 I--DDRKRVRDYLGKILSSSNHLLSLINDILDMSRIESGKLHLEETEVSLSDVLHDLKTI 560

Query: 658 IATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           I+ ++H   + + + + D        D+ RL Q+   +LSNA+ F+  G TV ++  +  
Sbjct: 561 ISGQIHAKQLELYMDAMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQCP 620

Query: 717 GDF------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLH 768
           G           VK+NG  + ++  + +F+ F         + +G GLG++I ++ +N+ 
Sbjct: 621 GTVKGSELYEIRVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVNMM 680

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG + + +     T    R+P +
Sbjct: 681 GGTIEVQTEQGKGTEFIVRLPLR 703


>gi|219847438|ref|YP_002461871.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541697|gb|ACL23435.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 554

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 7/223 (3%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PL  I+G+  LL   K+  +      Y+E I  S   LL+L++++LD A
Sbjct: 311 FLATMSHELRTPLNAILGYAQLLHIQKV--VPDSHQPYLERILTSGRHLLSLISNVLDFA 368

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++ G + L+Y  + +  L+ EV          ++ RI+     ++G    D +RL Q+ 
Sbjct: 369 RIEQGALDLDYRPVEVAALVEEVVSMTLPLAQRHHNRIETDCPPEIGVIETDGRRLRQVL 428

Query: 692 SKILSNAMDFSSKG-STVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             +LSNA  F+  G   + + A + NG     F+V + G  IP D    +F  F      
Sbjct: 429 INLLSNAAKFTEDGLIRLEVTAIQHNGRDGLRFAVHDTGIGIPPDKQHKLFQPFSQVDDS 488

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  G GLGL++ +  +   GG +++ S+    +T +  IP
Sbjct: 489 VTRRYEGTGLGLALSKQIVEALGGTITVQSTVGVGSTFSVWIP 531


>gi|3851457|gb|AAC72284.1| Nik1p [Candida albicans]
          Length = 1081

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 14/263 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A        V +   + +  T   EA   A+  K+ F+ ++S+E+R+PL  IIG T L 
Sbjct: 467 DALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLS 526

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L   Q + +  +   +  LL +++DILD++ ++A  M +      L   +   
Sbjct: 527 LDTE---LTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 583

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +++A K  E N+ +    D     + + D  RL Q+   +  NA+ F+ +G  V +   
Sbjct: 584 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEG-KVSVSVK 642

Query: 714 RDNGDFI-------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           + +   +         V + G  I +D    +F+ F        R   G GLGLSI +  
Sbjct: 643 KSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 702

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           I+L GG + ++S     +     
Sbjct: 703 IHLMGGEIWVTSEYGSGSNFYFT 725


>gi|296444720|ref|ZP_06886683.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
 gi|296257668|gb|EFH04732.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
          Length = 1148

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 6/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D   A R    + E L +A   K+ F+ ++S+ELR+PL +I+   D L       L+++ 
Sbjct: 494 DLAAARRDAERQVEELAEASRYKSQFLANMSHELRTPLNSILILADTLADD--DELDAEH 551

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++  + I  S   LL L+NDILDL+ ++AG ++L   ++ ++D L  + ++ A       
Sbjct: 552 TESAKVIGESGHHLLALINDILDLSKIEAGRLELVEESVRIDDALASIARTFAAPADRKG 611

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + + V +     S + AD +RL+Q+   ++ NA+ F+ +G  V + A+  +G   FSV +
Sbjct: 612 VALTVETAPGAPSVIRADGRRLIQVLLNLVGNAVKFTDRGE-VRVTASPMDGGVRFSVSD 670

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +  +SVF  F         +  G GLGL+I    + L GG + + S     + 
Sbjct: 671 TGVGIAPNQIESVFTAFQQVDGTTSRRYGGTGLGLTISRDLVTLMGGRIEVQSILGQGSV 730

Query: 784 INCRIP 789
            +  +P
Sbjct: 731 FSFILP 736


>gi|289168018|ref|YP_003446287.1| histidine kinase [Streptococcus mitis B6]
 gi|288907585|emb|CBJ22422.1| histidine kinase [Streptococcus mitis B6]
          Length = 449

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 138/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I  +      Y    +  DL   I     D   S     E LS  V  ++++   
Sbjct: 135 LN-KSILELLEIVDEY----ELRDLITQIPELMID---SQDANGEYLSLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALS--EPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVT 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|222082058|ref|YP_002541423.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221726737|gb|ACM29826.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 949

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 131/285 (45%), Gaps = 13/285 (4%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R  L   + +   +VL +    L NA   +  +    +V+ E  L  +     +A+  K+
Sbjct: 143 RVLLHAGIVIFQTTVLIWLSNKLVNAFERIENMGHVLTVQNE-TLEVRTREAEQANAAKS 201

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+P+  I+GF+ LL  ++   L ++Q  YV  I  +S  LL+L+ DILD 
Sbjct: 202 LFLANMSHEIRTPMNAILGFSHLLGRTE---LTARQHDYVTKIRGASDRLLSLLKDILDF 258

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG M L  ++     ++    +    K  E  I I    D  + + +  D  RL Q
Sbjct: 259 SKIEAGKMALEKASFDPRAMIERTMELSTLKAQEKGIAIGWQVDPAIPAMLRGDELRLSQ 318

Query: 690 IFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVS 744
           +   ++SNA+ F+S G  V LK       +   +    V++ G  +       +F+ F  
Sbjct: 319 VVLNLVSNAIKFTSSGE-VTLKLNLREHQDSRCVIEGVVRDTGLGMSSGQVARLFDSFTQ 377

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 RR  G GLGL+I    + L  G +S+ S +   +T    
Sbjct: 378 ADSSTTRRFGGTGLGLAISRQLVALMDGGISVESKEGHGSTFTFT 422


>gi|21232277|ref|NP_638194.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66767589|ref|YP_242351.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|21114041|gb|AAM42118.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66572921|gb|AAY48331.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
          Length = 1194

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 117/248 (47%), Gaps = 12/248 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  ++   L+ KQ  Y 
Sbjct: 806  AWQLAVHKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQ---LDHKQRSYT 862

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R  
Sbjct: 863  ESIRRAGSHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS 922

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
            +   G LG      D  R+ QI   +LSNA+ F+ +G  V LK +         F V + 
Sbjct: 923  LEV-GLLGDITASGDPTRIRQILLNLLSNAIKFTERG-VVGLKLSTLGSYQGLRFEVADT 980

Query: 727  GSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  D    +F RF          +  G GLGL+I +      GGH+ + S     T 
Sbjct: 981  GPGINADQKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTR 1040

Query: 784  INCRIPSK 791
                +P +
Sbjct: 1041 FVVDLPLR 1048


>gi|218282519|ref|ZP_03488769.1| hypothetical protein EUBIFOR_01351 [Eubacterium biforme DSM 3989]
 gi|218216506|gb|EEC90044.1| hypothetical protein EUBIFOR_01351 [Eubacterium biforme DSM 3989]
          Length = 950

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 126/246 (51%), Gaps = 7/246 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RAE +     ++   A   K  F+ +VS+++R+P+  I+G+++L+K     +   K  ++
Sbjct: 550 RAEASAKVALKSAEDASLAKTQFLHNVSHDIRTPMNAILGYSELMKNELKDNDLPKVFEH 609

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  +  ILL+++N++LD+A +++G M+L+ +   + D+   + +    +  + NI +
Sbjct: 610 LNKLQKAGNILLSIINNVLDMARIESGHMELDENYANIEDIRQRLIEMFEDEAKKKNIHV 669

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIF--SV 723
           +   + +    +AD  ++ +IF  ILSNA+ ++    +V +        + G  I   S+
Sbjct: 670 RYTFNVEHKHVMADVTKVEEIFVNILSNALKYTPSNGSVEVNVDELSCDEPGYMIVRTSI 729

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G  + ++  + +F  F        +  G GLG++IV+ +++L GG + + S     +
Sbjct: 730 MDTGIGMSQEYLEKIFESFSRERMISSKISGTGLGMAIVKKYVDLLGGTIDVKSVLGKGS 789

Query: 783 TINCRI 788
           T    +
Sbjct: 790 TFIVTL 795


>gi|212212502|ref|YP_002303438.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212010912|gb|ACJ18293.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 683

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 208/486 (42%), Gaps = 32/486 (6%)

Query: 329 QFHNRSFVELWEIDLAFLATNPS------NDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
            + + +F  ++ I    L  NP+        E  + LR      +  N K     +   Y
Sbjct: 56  VYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRLRHLIMEWQVKNKKGAAYTVD--Y 113

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           +  + + +  H  N  +  V       G    + ++++ +     +++  V      ++ 
Sbjct: 114 RIIDAYGEM-HWINETSYPVYEDDQCLGY-AGVVKDVSSEKLRVKEFDNAVHYFRHFVER 171

Query: 443 LSEGVAVFGPDG-RIKLSNPAFRSLWKT-EENRLSPGTHIRN--IAATCSRYYNESDGWD 498
           +S    V G  G +    +P +  +W    E+         +  +    S      + ++
Sbjct: 172 VSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNPKSWIDYVLPEDISNGKVNVNFYE 231

Query: 499 LFAAIIT-----SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
             A   T      F    +   G +  + D+               +      D++R E+
Sbjct: 232 TAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIMENGKLVGFAGIAEDVTNDALR-EK 290

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E   +A+  K+ F+  +S+ELR+PL  I+G + +LKT    +L+ +Q   ++ I
Sbjct: 291 ELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTH---NLSDEQQGQIDVI 347

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S +   LL L+ND+LD A ++AG +     T+ L++L+ ++K  +    H+  I++K   
Sbjct: 348 SQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFDY 407

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNG 727
              + S  + D +R+ Q+   +LSNA+ F+ KG  V L A     D       F+VK+ G
Sbjct: 408 PENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQLTANCLKKDHKKMTLCFTVKDTG 466

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +    S+FNRF    + ++ +  GVGLGLSIV+  +   GG +S++      +   
Sbjct: 467 IGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTIEPGVGSEFT 526

Query: 786 CRIPSK 791
           C IP +
Sbjct: 527 CIIPFR 532


>gi|164688824|ref|ZP_02212852.1| hypothetical protein CLOBAR_02471 [Clostridium bartlettii DSM
           16795]
 gi|164602300|gb|EDQ95765.1| hypothetical protein CLOBAR_02471 [Clostridium bartlettii DSM
           16795]
          Length = 533

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 199/446 (44%), Gaps = 39/446 (8%)

Query: 371 WKTWKENIFSVYKSSE----------THKDTWHLPNG-QTLHVIVTSNPR-----GGTIW 414
           +  W +     ++++E            ++T+   NG +T+   +           GT+ 
Sbjct: 75  YDVWPKRQCDNFRANEKEVIEDNTIKIFEETFPFRNGDKTVDTTIWPLLDKDNHPIGTMG 134

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  +   +       N   K   E I    + V     +  I   +PA+ ++++      
Sbjct: 135 IAIDGKCRARFYENLNNNEKNFRE-ITKYCDSVFFIRDEKNIIYMSPAYETIFEE----- 188

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL- 533
           S   +  ++    + + NE     +         +E ++ +  L+   +  ++Y  +P+ 
Sbjct: 189 SCDYYAHDVYQFNNFFKNEEQKEGILKDYEFDKMNEGRA-KAKLKNGKEKWIQYKFLPII 247

Query: 534 -PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             + + +     +TD  + E AL E+ E      +I+  F  ++S+ELR+P+  I+    
Sbjct: 248 DEDGKAIKRIGILTDITK-EVALEEEKE------KIRLDFFANISHELRTPVNLILSSIQ 300

Query: 593 LLKTSKLGSLNSKQ----SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           +LK  KL +L+ +     S Y+  +  ++  L+ L+N+++D   +D+  ++++     + 
Sbjct: 301 VLKL-KLSTLDKENYNYFSNYINIMQRNTFRLVKLINNLIDSTKIDSKSIEIHPINSDII 359

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             + +   S+   +   N+ +   +D +      D   + +I   +LSNA+ F+ K   +
Sbjct: 360 SFIEDTCSSVLDFVKSKNMNLIFDTDIEEEVIGFDPSYIERIMLNLLSNAIKFNKKDGNI 419

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
            +  + +  D +  VK+ G  IPE+   ++F+RF  V +  + +R G G+GL IV++ ++
Sbjct: 420 FVNVSVNEKDVVVEVKDEGPGIPEEKIPNIFDRFEQVRSKMKSEREGTGIGLYIVKALVD 479

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
           LH G + ++S ++   +I   +P K+
Sbjct: 480 LHNGTIRVNSEEKDGCSIIFTLPRKK 505


>gi|77164896|ref|YP_343421.1| PAS sensor signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
 gi|254434009|ref|ZP_05047517.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883210|gb|ABA57891.1| PAS/PAC sensor hybrid histidine kinase [Nitrosococcus oceani ATCC
           19707]
 gi|207090342|gb|EDZ67613.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 938

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/495 (16%), Positives = 188/495 (37%), Gaps = 19/495 (3%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            Q      +L N    + IFD      + N++ +++W             +   E   + 
Sbjct: 313 KQRRLYETVLSNTPDLVYIFDLEGRFTYVNKALLKMWGRTWEESVGKTCFELGYEPWHAE 372

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             + E       K+ I        T      + +   + V+              ++T +
Sbjct: 373 MHMREIEQVIKTKKPIRG--DVPFTGMHGRRIYDYIFMPVLGEDGEVEAIAGTTRDVTER 430

Query: 423 VDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
              E       + Q   ++     G+  +     +  ++  F +L+         G  + 
Sbjct: 431 RKAEEAAQKSEERQRLALEASHSFGIWDWDIKNDVFTADERFGALFNLSPEEAKEGVKLE 490

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI----IPLPNAQ 537
            +A    +Y +E+D   +   I           +       D  +++      I L    
Sbjct: 491 QVA----QYIHENDFKRVLDVIKEKLQTGGHYKEEYRVRQKDGTIKWVSVRGNIQLDENG 546

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             + F  V   +  ER      EALR+AD+ K+ F+  +++ELR+PL  +     ++K++
Sbjct: 547 EAVRFPGVGVDITLER---NAIEALREADQKKDEFLATLTHELRNPLAPMRNALYVIKSN 603

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              +    Q+   E I    + ++ L++D++D++ +  G ++++   + +   + +  ++
Sbjct: 604 SANA--EAQTHAHELIERQISQIVRLIDDLMDVSRITRGKIRISKDIVDIQKAITDAVET 661

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +   + E N  + +           D  RL QIFS +++NA  ++ +   + +   +   
Sbjct: 662 VQLLIEERNHELILNFPDNPVFVEGDLVRLAQIFSNLINNAAKYTEQKGEIEVNIRQFGR 721

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRG-VGLGLSIVESFINLHGGHVSIS 775
                + +NG  I ++    +F+ F        + +G +G+GL++VE  + LHGG V + 
Sbjct: 722 VVEIEIIDNGIGIAKEKLPFIFDMFSQFEDPLNRSQGVLGIGLTLVEKLVELHGGSVDVE 781

Query: 776 SSD-EGVTTINCRIP 789
           S      T     +P
Sbjct: 782 SKGINEGTKFTVSLP 796



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 110/325 (33%), Gaps = 41/325 (12%)

Query: 148 QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAE--TTLKCKKLSNHISVFKVLFDSLDFL 205
            +   +++  + +   A L     +     LAE    L  KK S    +++ +  +   L
Sbjct: 272 TDKHIVEVLSQTA---AILIEREKENKARMLAEEAVNLSTKKFSKQRRLYETVLSNTPDL 328

Query: 206 VWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLFKEEIKKRMISSSALE----- 259
           V+  D  G   + N +     +  G  +++++G+   +L  E     M      +     
Sbjct: 329 VYIFDLEGRFTYVNKA---LLKMWGRTWEESVGKTCFELGYEPWHAEMHMREIEQVIKTK 385

Query: 260 KNFCETVSTLEHGNNKSYKIV--RVLNSFGE----AGIAIDVSKEITVNDQLTHTYE--- 310
           K     V        + Y  +   VL   GE    AG   DV++     +    + E   
Sbjct: 386 KPIRGDVPFTGMHGRRIYDYIFMPVLGEDGEVEAIAGTTRDVTERRKAEEAAQKSEERQR 445

Query: 311 --ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             +  + +  I  +D    +   +  F  L+ +           +++ +++         
Sbjct: 446 LALEASHSFGIWDWDIKNDVFTADERFGALFNLSPEEAKEGVKLEQVAQYIHEN------ 499

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSN---PRGGTIWMF----ENL 419
            ++K   + I    ++   +K+ + +   +G    V V  N      G    F     ++
Sbjct: 500 -DFKRVLDVIKEKLQTGGHYKEEYRVRQKDGTIKWVSVRGNIQLDENGEAVRFPGVGVDI 558

Query: 420 TVQVDLETKYNTLVKVQGETIDHLS 444
           T++ +         + + E +  L+
Sbjct: 559 TLERNAIEALREADQKKDEFLATLT 583



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 14/156 (8%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             K++   ++    + +  + V +F  +GR    N A   +W              ++  
Sbjct: 308 TKKFSKQRRLYETVLSNTPDLVYIFDLEGRFTYVNKALLKMWGRTWE--------ESVGK 359

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE---LLSDSVLEYSIIPLPNAQTMLTF 542
           TC     E    ++    I      +K ++G +    +    + +Y  +P+      +  
Sbjct: 360 TCFELGYEPWHAEMHMREIEQVIKTKKPIRGDVPFTGMHGRRIYDYIFMPVLGEDGEVEA 419

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +  T     ER    K E   +  E +       S+
Sbjct: 420 IAGTTRDVTERR---KAEEAAQKSEERQRLALEASH 452


>gi|320104436|ref|YP_004180027.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751718|gb|ADV63478.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1011

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 113/715 (15%), Positives = 237/715 (33%), Gaps = 101/715 (14%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
             A +    +D          L  +   +    FK L D          + G  L  N +
Sbjct: 105 GLALVGASIIDQHRRTRFRLILSERD-WDEQRHFKRLIDLCQARA-VIGRDGTYLKVNAA 162

Query: 222 YKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
           Y    +       G    ++I    +    E + ++  +      F       +   +++
Sbjct: 163 YAALLDKTPEQLVGTAAAESIHPEDRHIIAEARDQLARTGQAVIEFRALDKNGQPTYHRA 222

Query: 277 YKIVRVLNSFGE---AGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQ----- 324
             I       GE     I  D+++       L     +L     N+     I  +     
Sbjct: 223 LIISLHDWEDGEEEFFCIRSDITELRDAQSNLKRREAMLRVLEENIPGGALIQSEQIEGP 282

Query: 325 ---NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
                + ++    F  +   D   L  N ++     F    +   ++  W+  + +  + 
Sbjct: 283 SGLELHFKYIGTGFQRVLGYDPQILINNSAHL----FNNLIHPDDQEQMWRAIQRSAQAW 338

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW---MFENLTVQVDLETKYNTLVKVQGE 438
               ET +        + + V       G  +    +  ++T Q++         +   +
Sbjct: 339 EPLDETVRVRAAWGQWRWIQVRSRPRREGDRVLRDGLILDVTEQIEANQARLETEQRFRQ 398

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYYNESDG 496
            +D +  G  +     R    N     L+  E+     G    +IA     + +   SD 
Sbjct: 399 FMDQVPMGAWITDDHERFVFVNRYTARLYGVEDPESLVGRRTSDIAPLEIAAEWKVVSDQ 458

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML------TFVNVTDSVR 550
                 +I      R+   GT+      VL++   PL +AQ           +++T+  R
Sbjct: 459 VRREGRVIQQVGRGRQP-DGTI--FKGLVLKF---PLTDAQGRTDNLVGGVGIDLTELKR 512

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +  L     A  +A   ++  +  +S+E+R+PLT I+G  D L  S +    +++++  
Sbjct: 513 TQAILERSRWASEQAMRARSDHLAQLSHEIRTPLTAILGNVDRLVESDIPRDEAERAR-- 570

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI- 669
           + +  S   L +L+ ++LD A ++AG + +++S    + ++ +V    +    E  IR+ 
Sbjct: 571 QTLIRSGRHLSHLLANVLDFAKIEAGGLDIHWSDANPHAIVADVVMLTSHAAMEKGIRLA 630

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----------------- 712
            ++ +    +   D  R+ QI + +++NA+ ++  G  V L+                  
Sbjct: 631 HLVEETVPETIRTDPLRVQQIVTNLVTNAIKYTPPGGEVTLRVIHRVAVSDPDTTESEHL 690

Query: 713 ----------------------------------ARDNGDFIFSVKNNGSSIPEDMCKSV 738
                                               + G  +  V++ G  I  D    V
Sbjct: 691 GHPPETETVFASFSTSIPSSRWETTTSEDSGAEPTVERGWVVVQVRDTGVGIAADQLPRV 750

Query: 739 FNRFVSNAHRGQRR----GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F   A          G GLGL I  +  +   G + + S+    +     +P
Sbjct: 751 FEPFSQVAAERGSGTAPVGYGLGLHIARTLAHQLDGFIQVRSAPGRGSLFELWLP 805


>gi|254975048|ref|ZP_05271520.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-66c26]
 gi|255092437|ref|ZP_05321915.1| putative two-component sensor histidine kinase [Clostridium
           difficile CIP 107932]
 gi|255314175|ref|ZP_05355758.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-76w55]
 gi|255516854|ref|ZP_05384530.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-97b34]
 gi|255649955|ref|ZP_05396857.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-37x79]
 gi|260683108|ref|YP_003214393.1| putative two-component sensor histidine kinase [Clostridium
           difficile CD196]
 gi|260686706|ref|YP_003217839.1| putative two-component sensor histidine kinase [Clostridium
           difficile R20291]
 gi|260209271|emb|CBA62603.1| putative two-component sensor histidine kinase [Clostridium
           difficile CD196]
 gi|260212722|emb|CBE03827.1| putative two-component sensor histidine kinase [Clostridium
           difficile R20291]
          Length = 912

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 167/392 (42%), Gaps = 27/392 (6%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEE 471
           +  F ++T ++++    N    +  + +D + E + +      R+  +N AFR L+    
Sbjct: 509 LLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLSTSRVLYTNRAFRELFGISS 568

Query: 472 NRLSPGTH-IRNIAATCSRYYNESDGWDLFAAI----ITSFDDERKSLQGTLELLSDSVL 526
           + L   T   RNI     +Y N  +  +   +I      +   E K +  TL        
Sbjct: 569 DVLGVTTQKYRNIL--VKKYINNLNIGEREKSIHIVNENNHIKEVKMISRTLYFGQKRSR 626

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              I  L             +S R ++AL ++     + D++K  F  ++S+EL++PL N
Sbjct: 627 VRIIKDLS---------VQRESERLKKALIKQR----QYDQMKMEFYANISHELKTPLNN 673

Query: 587 IIGFTDLLKT----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           I     L++      K+        ++++    +   LL L+++I++++ V + I K+  
Sbjct: 674 IYSSVQLIENLYKKGKIIDFQDILKEHIKITKQNMFRLLRLIDNIINISQVKSDIYKIKA 733

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               + D+   +  SI++      I +   +D +      D + + +I   ILSNA+ F+
Sbjct: 734 VNFDIIDITERIVTSISSYAKSKGIDLIFDTDEETVMVGLDPESIERIILNILSNAIKFT 793

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSI 760
            +G  +++   + +      +K+ G  I ++    +FNRF    + G     G G+GL +
Sbjct: 794 LEGGEILVGIYKKDETVEIIIKDTGVGIDKEKLNDIFNRFKQIENSGISNEFGSGIGLCL 853

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +S I +  G + I S     T +    P KE
Sbjct: 854 TKSLIEIQNGKIYIDSKVGEGTNVKVIFPIKE 885



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 103/295 (34%), Gaps = 33/295 (11%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           ++ +     + L  +     + D +  + + N  F + +  D+       +  ++L F++
Sbjct: 270 IDQRKELLRQALDTIPNVWIVTDYDFNISYTNNKFKDEFSKDMN------NYYKILTFIK 323

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
              K+ E+L  K +  +I  + K  E +   + L        +  +      +    ++T
Sbjct: 324 EDEKVAEKL--KKFDNDISIIDKLVELNDKIYLLS-------LSNNKDESNYLISLNDIT 374

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-----RIKLSNPAFRSLWKT-----E 470
            ++ ++ +   + K     I ++   + V   +G     ++   N  +   +K       
Sbjct: 375 NEIKIDEEIRNINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCVSSDLV 434

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLE 527
           +  L       NI    +R +   +      A I S++D    +   +   S+    V E
Sbjct: 435 DMTLEQYFETFNIDFFDNRKFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEE 494

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS-----FVQHVS 577
             +    +   +   +   D  +    L   NE     +++ +      F++ +S
Sbjct: 495 VRVGDYWSDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLS 549



 Score = 41.1 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 108/301 (35%), Gaps = 47/301 (15%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG-----DILWANISY 222
           ++SL+ I +E+ +   + + ++        +  ++   +  R   G      ++  N  Y
Sbjct: 367 LISLNDITNEI-KIDEEIRNINKDYE---NIILNIPSPILVRSAEGGIKKNKVISINKKY 422

Query: 223 KKNTETEGIVFQKAIGE------SRKLFKEEIKKRMISSSALEKN---FCETVSTLEH-- 271
           +K+ +           E      +   F     KR+  +   +     + +T + + +  
Sbjct: 423 EKSFKCVSSDLVDMTLEQYFETFNIDFFDNRKFKRLNLTQEKKAEIVSYNDTANCIVNFV 482

Query: 272 -----GNNKSYKIVRVLNSFGEAGIA-----IDVSKE----ITVNDQLTHTYEILHNLTV 317
                G     ++ RV + + +  +       D++KE     TVN+Q     ++L  +  
Sbjct: 483 MSDSEGEEHVEEV-RVGDYWSDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPE 541

Query: 318 AIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
           AI + D     + + NR+F EL+ I    L    +  +    L                 
Sbjct: 542 AIFLEDLSTSRVLYTNRAFRELFGISSDVLGV--TTQKYRNILVKKYIN---------NL 590

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           NI    KS     +  H+   + +   +    +   + + ++L+VQ + E     L+K +
Sbjct: 591 NIGEREKSIHIVNENNHIKEVKMISRTLYFGQKRSRVRIIKDLSVQRESERLKKALIKQR 650

Query: 437 G 437
            
Sbjct: 651 Q 651


>gi|158337655|ref|YP_001518830.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158307896|gb|ABW29513.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 801

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 161/377 (42%), Gaps = 14/377 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E    + V      I+ + + +  F  DG     N      +K   N   P  
Sbjct: 430 IVERQRAEAALQSSVATNRALINAMPDWMFRFSADG--IFVN------YKDAPNTTLPLP 481

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPN 535
               +     + + +     L   I  +       L    EL  D    + E  I     
Sbjct: 482 TEEFLGKPLDQVFPQDTATSLMNCIKNALGSHEMQL-FEYELDHDGNPLMFEARIAVSAE 540

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            + M    ++T+  R E  +       R+ +E+K+ FV   S+E R+PL  I+   +LL+
Sbjct: 541 NEVMAVIRDITERKRYEDDIRTALNKERELNELKSRFVAMTSHEFRTPLATILSSAELLE 600

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                  ++++ +++  I  S   +  L+ND+L L   ++G +      + L +    + 
Sbjct: 601 HYGHKWDDTRKLKHLNQIQQSVEHMTGLLNDVLLLGKAESGNLAFKPIPMQLTEFCKGLA 660

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +  ++      I      +      D + L  IF+ +LSNA+ +S +G TV      +
Sbjct: 661 EEL--QITTKTHEIVCRLQDQPAETRMDEKLLRHIFTNLLSNAIKYSPQGGTVDFDLVFE 718

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           +   IF+V+++G  IP+  C  VFN F   ++ G   G GLGL+IV+  ++LHGG +S++
Sbjct: 719 DNYAIFNVQDHGLGIPQSECDRVFNSFNRASNVGNISGTGLGLAIVKRSVDLHGGEISLT 778

Query: 776 SSDEGVTTINCRIPSKE 792
           S ++  TT   ++P  +
Sbjct: 779 SQEKVGTTFTVQLPINQ 795



 Score = 38.4 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 63/174 (36%), Gaps = 15/174 (8%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++T +   E       +      +   +   +  PDG +  +N                 
Sbjct: 261 DITERKLTEAALQDSERRFRAIFNQTFQFSGLLKPDGTLLEANQTALDFGGL------QL 314

Query: 478 THIRNIAATCSRYYNES--DGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPL 533
             + +     +R++  S      L AA++ +   +    +  +    D V  +++S+ P+
Sbjct: 315 EDVIDRPVWLARWWTTSTDTQKRLKAAVLEAARGQFIRYEVAVLGARDVVATIDFSLKPV 374

Query: 534 PNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +        +    +++D  + E AL + +  L    + + + ++  + +LRS
Sbjct: 375 RDDNGDVVLLIFEGRDISDRKQVEAALQQAHSELEVRVQQRTAELKQSNEQLRS 428


>gi|295107410|emb|CBL04953.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 727

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 122/260 (46%), Gaps = 11/260 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
            + N     R +  L E     + A   K+ F+ ++S+++R+P+  I+G T + K     
Sbjct: 188 MYRNRKREDRLKADLREALSLAQIASAAKSQFLSNMSHDIRTPMNAIVGLTTIAKAHLHE 247

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               + +  ++ I +SS  LL+L+ND+LD+  +++G + LN       D +N V      
Sbjct: 248 P--ERMAACLDRIQSSSRHLLSLINDVLDMGKIESGKIVLNEDRFSFPDFVNGVIAIAQP 305

Query: 661 KMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--- 716
           +    N+ + +     +  + V D  RL Q    ++SNA+ ++  G ++ L  +      
Sbjct: 306 QAKAKNLSLDITLGTIQQENVVGDAMRLNQALINLVSNAVKYTPDGGSIRLSLSERPSHR 365

Query: 717 ---GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGH 771
               D+ F V++ G  +  +  + +F+ F    +    +  G GLG++I ++ +++ GG 
Sbjct: 366 PGCHDYRFVVQDTGLGMSPEFLERLFDPFEREESDATKRIEGTGLGMAITKNVVDMMGGS 425

Query: 772 VSISSSDEGVTTINCRIPSK 791
           + + S+    +T    +P +
Sbjct: 426 IEVESTPGEGSTFIMTVPLQ 445


>gi|15893615|ref|NP_346964.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023168|gb|AAK78304.1|AE007547_1 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
          Length = 654

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 165/358 (46%), Gaps = 21/358 (5%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              ++ L +GV +   D ++   N A R ++   +++   G  I  I   C         
Sbjct: 277 RGVLEKLKDGVIIKNED-KVVFMNEAQRKMFGLTKDKTVEGIDINKIVHRCC-------- 327

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                    + ++E+K +    + L   V  + I       T+    +V+D +  +++  
Sbjct: 328 -------CKAQNNEKKIITAGGKELYLEVEAFGITINGERLTLDIVKDVSDEILVKKS-K 379

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYIS 614
           E+ E ++K D++K  F  ++++ELR+P+  I     +++     +   +++  +Y++ + 
Sbjct: 380 EEIEKVKKTDKLKGEFFTNITHELRTPINVIYSALQVMEMRIDKNNFDRRNLNKYMKVLK 439

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL ++++++D+  +D G +K   S   +  L+  +  SI   +HE  + +   +D
Sbjct: 440 QNCYRLLRIISNLIDITKIDTGFLKPCVSNREIIGLIENITMSIVPYLHEKGMELVFDTD 499

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D   + +I   +LSNA+ F  +   V++         +  VK+NG  IP++ 
Sbjct: 500 VEEKYVQCDPDMVERIMLNLLSNAVKFRKEKGLVLVTIHDKGSRIVLKVKDNGIGIPKEK 559

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            K +F RF      H    +G G+GLS+V+S + ++GG +S+ S +   TT     P+
Sbjct: 560 QKMIFKRFKQINPLHVTPHQGSGIGLSLVKSIVEMNGGKISVESEENVGTTFIIEFPA 617


>gi|332981485|ref|YP_004462926.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699163|gb|AEE96104.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 473

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 173/394 (43%), Gaps = 14/394 (3%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +++ ++     +  F ++ +          L  ++GE++         + P+G+  + +
Sbjct: 87  RILILNHRGTVVVDSFNDINILNRTLNHQEVLAALKGESVSQ-----QYYLPEGQWVMYS 141

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTL 518
            A  +        +   + +++I  + S+  +    + +F A+  +      S  +   +
Sbjct: 142 TAPITANGDIIGVVFISSSLKDIYDSISQVRDRLLVYSVFLAVAIALFSYFISGFVTKPI 201

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + ++D + E     L     +     + +   A  A++++ E+L   D+ ++ FV + S+
Sbjct: 202 KDITDVIREMGRGHLRQKVEVSGSKEIIELGNAFNAMSQRVESL---DKARSEFVANASH 258

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++PL++I      L       +     +++  I +    + N++ND+L L  +D    
Sbjct: 259 ELKTPLSSIKVLAQSLVQDPNADIKV-YKEFMYDIDSEIDRMNNVINDLLTLVQLDKDKP 317

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            + Y+ + L  L+NEV + +       NI++    +  + S   D  +L Q+   I+ NA
Sbjct: 318 DITYTDVDLERLINEVLKVLRPLAAAKNIKLNYRCEEGV-SIRGDAPKLKQMLINIIDNA 376

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           + ++ +G  V +   + +G+ +  V +NG  IP      +F+RF            G GL
Sbjct: 377 LKYTPEGGKVDVCLRKKDGEALIEVVDNGMGIPRADLPYIFDRFYRVDKARSRATGGTGL 436

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLSI +    LH G +++ SS+   T  + ++P 
Sbjct: 437 GLSIAQKIAYLHKGTINVESSEGEGTRFSIKLPL 470


>gi|160889978|ref|ZP_02070981.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270294654|ref|ZP_06200856.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481371|ref|ZP_07940439.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860366|gb|EDO53797.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270276121|gb|EFA21981.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902467|gb|EFV24353.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 497

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/501 (16%), Positives = 195/501 (38%), Gaps = 41/501 (8%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN------------DELL 356
            ++ ++  V+I + D    +   N+  +    ++   +    ++            ++LL
Sbjct: 17  EQLFNSWPVSIIMIDLEDCIWRLNQQVMNELHLNEYVIGRRITDLLEVVCDKKNVLEDLL 76

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             LR  +     L+   +   + S               +GQ + +          +  F
Sbjct: 77  LQLRERDVRIIPLDINCFIRELKSGISFLIQGAMVGIHEDGQLVRI----------VLYF 126

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK--TEENRL 474
            N+  +   +   N  +                F  +  + +  P +       T +  L
Sbjct: 127 RNVLEERTQKHLLNIALSRTQIFQWS-------FDMEHNLMIIEPRYFEYLGIPTRDYTL 179

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELL---SDSVLEYSI 530
           +P      I     +   ++    L   +     + R +   G  E     S  V + + 
Sbjct: 180 TPEEFAFLIHPDDRKGVFDALALQLHGNLYERPVEYRLRRGDGKWEWFEAQSTYVGQLTD 239

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +P       ++     D    E  L E  +  +++DE+K+ F+ ++S+E+R+PL  I+GF
Sbjct: 240 LPFRIIGICMSTQKYKD---TENKLNEALQKAQRSDELKSVFLANMSHEIRTPLNAIVGF 296

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + LL          +  ++   I  +S +L+ L++DILDL+ +++  M+ ++  + LN +
Sbjct: 297 STLLACGDADLSRQEIMEFTSLIEKNSQLLMVLISDILDLSKIESNTMEFHFEKVSLNGI 356

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L  +  +    +    + + +    +      D  RL Q+ + +++NA+ F+++G   I 
Sbjct: 357 LESIYSAQKMNLR-KGVELLLDLPDRAAVIYTDPTRLGQVVNNLINNAVKFTAEGRITIG 415

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
              +D       V++ G+ + E++   +F RF       Q  G GLGL+I  + +    G
Sbjct: 416 YRLKDFATLEVFVEDTGTGMSEEVLAHIFERFYKGDAFVQ--GTGLGLAICRTIVERFHG 473

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + ++S+    +     +P +
Sbjct: 474 KIEVASTLGKGSRFAIVLPQE 494


>gi|149377907|ref|ZP_01895635.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149357797|gb|EDM46291.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 640

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 155/383 (40%), Gaps = 25/383 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWK 468
           GG  W+         L ++   + +      +    G+ +F     R+  +NP F S + 
Sbjct: 277 GGVFWL-------TSLMSRDREMQRRLWGLFELAPMGIGLFSVHSNRLLRANPTFESQFG 329

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                L       ++           +       +  +  +  +        ++    E 
Sbjct: 330 KSVQSLDFFDQPLDV---------HGEPLANRPGVQETLREHARISGLEGYYMAPGHDEP 380

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S I L   Q           +  E          +K D +KN F+  VS+ELR+PLT+I 
Sbjct: 381 SPIMLHGLQLDNYGNEPVVWLITE-----DISERKKVDHLKNEFISTVSHELRTPLTSIS 435

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LL  + +G L  K S+       +S  L  L+ND+LD+  + AG M       VL 
Sbjct: 436 GSLGLLANNAVGELPEKASKLAHIAYRNSQQLTFLINDLLDMEKLVAGKMPFRSEHYVLQ 495

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           DL++E  ++IAT   + +I ++V S+    +   DRQRL Q  + +LSNA+ FS  GS+V
Sbjct: 496 DLVHESVENIATFAQQRDIDLQV-SELPAVTVHVDRQRLNQAITNLLSNAIKFSPAGSSV 554

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            + A++        ++++G  +     + +F +F       +R   G GLGL+I    + 
Sbjct: 555 DIFASQREESVRLCIRDHGEGVAPHFREHIFQKFSQADASDRRASGGTGLGLAITRELMT 614

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
              G V   S      T    +P
Sbjct: 615 RMDGTVDYESIPGEGATFWLELP 637


>gi|126740052|ref|ZP_01755742.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6]
 gi|126718871|gb|EBA15583.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6]
          Length = 831

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 148/389 (38%), Gaps = 22/389 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +   +  E +  TL +     ++    G+  +    +  + +   R ++  E        
Sbjct: 293 IKTLMRRERQLETLSRRLEVAVEVSKIGIWEYDVKTQEVIWDQLLREIYGLERQEPISLD 352

Query: 479 HIRNIAATCSR--------YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
             +       R           E  G+      I   D  ++ ++       D      +
Sbjct: 353 IWKGFIHPEDRDEAVKTLMRAAEEGGYHTSEYRILQSDGNQRHIRTMGTTFKDGAGGMRM 412

Query: 531 IPLPNAQTMLTFVN------VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I +    T    +           ++    L E   A  +AD  K  F+ ++S+E+R+P+
Sbjct: 413 IGVNLDVTRDVHLREKLIEANHALMQRNNELEEARIAAERADRAKTEFLANMSHEIRTPM 472

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             IIG  DL+  S LG     + QY++ I  SS  LL ++NDILDL+ ++AG + ++   
Sbjct: 473 NGIIGMADLMSESNLG---EGERQYLDTIRDSSHALLKIINDILDLSRMEAGKLAISPVD 529

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSS 703
             L   ++     +  +  E  + + +  +  L   +  D  R+ Q+   ++ NA+ F+ 
Sbjct: 530 FDLQRCISGAVNLLRPRAREKGLWLSLSFEEGLPGLMRGDDGRIRQVLVNLVGNAVKFTH 589

Query: 704 KGST-VILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLS 759
            G   + +   A D       V++ G  I  +    +F+RF            G GLGL+
Sbjct: 590 SGGVDIRVSKVAGDPYHLQIEVEDTGIGIKPEQAAHIFDRFSQADAAITRSFGGTGLGLT 649

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I     +  GG +++    +       ++
Sbjct: 650 ISSILASRMGGGITLCEDKQDGACFTLQL 678


>gi|90419109|ref|ZP_01227020.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337189|gb|EAS50894.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 653

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/351 (24%), Positives = 152/351 (43%), Gaps = 8/351 (2%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           L   +      G +   +PA  +    E + ++  + +  +       + ++       A
Sbjct: 269 LDAALISLDARGMVTAVSPATLTGIGQERDTVTGRSLVDLVHVGDRVVFLQALADARRTA 328

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            + +     +   GT       +   +     +    +      +S   + AL   N   
Sbjct: 329 QVVTAAARLRRGDGTYHPAGLRLRGCAETGAVHVAVAVAANAAGESADLQTALDAAN--- 385

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILL 621
            ++   K+ F+  VS+ELR+PL  IIGF+D+L     G   + +Q +YV  I  S   LL
Sbjct: 386 -QSSAAKSQFLAAVSHELRTPLNAIIGFSDILDQEFFGGFESDRQKEYVGLIRQSGQHLL 444

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           ++VN +LD++ ++AG  +L      L + ++     +  +    ++R+ V    +     
Sbjct: 445 SVVNSLLDVSKIEAGRYELVPEAFGLGEAMDLAVDVVREEARRKDLRLDVRPGCRDEEIT 504

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           ADR+   QI   +LSNA+ F+  G  V L++ R      FSV + G  I E   + +   
Sbjct: 505 ADRRACHQILLNLLSNALKFTEVG-VVTLESRRVGAMVEFSVSDTGIGIAESDIERLGRP 563

Query: 742 FVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           FV  +    RR  G GLGLS+V+    LHGG ++I S     T +  R+P+
Sbjct: 564 FVQVSSGTTRRYQGTGLGLSLVKGLAELHGGDMTIRSQPGVGTMVTVRLPA 614


>gi|109899128|ref|YP_662383.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109701409|gb|ABG41329.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 720

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 111/232 (47%), Gaps = 11/232 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            + K+ F+  +S+ELR+P+  + G  +L   +       K  +Y++    +   LL L+N
Sbjct: 229 SKAKSEFLASMSHELRTPMNGLFGMMELAIDNPH-----KSGEYLKKAKNAGRQLLVLIN 283

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           D+LDL+ ++AG +++  +++ L  L+++V    +       +         L +  V D 
Sbjct: 284 DVLDLSKIEAGKLRIERTSVDLLQLMDDVTSVQSANCRLKKLAFDYQKQTNLPAYIVGDP 343

Query: 685 QRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            R+ QI   +LSNA+ F+ +G+    + +            V++ G  IP +  +++FN+
Sbjct: 344 TRIAQILHNLLSNAIKFTQQGTVTLRIGVFVTEKRHWLTIDVQDTGMGIPPEKTRTIFNK 403

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F        R   G GLGLSI +   +L GG +++ S  +  +     +P +
Sbjct: 404 FEQADQSTTRIHGGTGLGLSIAKQLTDLMGGKLTVQSKVDKGSCFTFSVPIE 455


>gi|222053125|ref|YP_002535487.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221562414|gb|ACM18386.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 751

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 113/583 (19%), Positives = 237/583 (40%), Gaps = 64/583 (10%)

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK-----NFCETVSTLEHGNNKSYKIVR 281
           E E  V Q+ +  +    ++ I+   + S  +E+     ++        +     ++ + 
Sbjct: 211 EAEVAVSQRGMRIASNRAEDNIQTATVESHVIERLQKGYSYRGKAEIGNNAYETVFEPLT 270

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI-----FDQNRY-----LQFH 331
                    +++ +S+E     ++     IL +  V I +     F   R      L+  
Sbjct: 271 NSRGEFVGSLSVALSRENMQKIRVDSLKNILMSAIVGILLSFVIAFIAARKFAGPILELA 330

Query: 332 NRSFV-ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
           N +   EL ++    +  N  NDE+ +   S N++   +N    +++I S  K+++  + 
Sbjct: 331 NGARRIELGDLSQRVMVRN--NDEIGDLAGSFNRM---VNALAERDSIISR-KNNDLQEL 384

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
              L    +L                   T ++ +E      +      +  + EGV V 
Sbjct: 385 NGLLEKKVSLR------------------TAELSME------MGRLETILTSMVEGVLVT 420

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             D R+ L NPA +++      ++  G  I  +  +             F+ ++    + 
Sbjct: 421 DSDSRVILFNPAAQAILGIVPYKV-IGQSIEQLGNSGE-----------FSNLVRCIQEI 468

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           +++         D  L+   + +  A            V + R +T + E     D +K 
Sbjct: 469 KETWGPVASRQEDLTLKGKKLKINLAPMAREGNEFAGIVMSLRDITAEEEI----DRMKT 524

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  VS+EL++PLT++ G   LL  ++   L   + Q +     ++  L+ ++++ILD+
Sbjct: 525 EFISTVSHELKTPLTSMKGSLQLLL-NRGKWLTETERQLLSVCLRNTQRLIRMISEILDI 583

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +++G M   +  + + +L+    + I T  H  +I I       L     D  RL+Q+
Sbjct: 584 SRMESGGMDFTFKPLSMGELVVYAIEEIKTFAHNRSISIVNSLGDHLPLVYGDHDRLIQV 643

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRG 749
            + +LSNA+ FS +G  V++ A R+    + SV +   +I     + +F +F    + + 
Sbjct: 644 LTNLLSNAVKFSPEGKIVMVLAEREGNYLVVSVTDRARAIQWSDREKLFKKFQQLESDQP 703

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + G GLGL+I +  I  H G +  ++  EG    +  +P  E
Sbjct: 704 MQGGTGLGLAICKEIIEKHHGKIYYNAGKEGGNVFSFTVPIYE 746


>gi|325291777|ref|YP_004277641.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
 gi|325059630|gb|ADY63321.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
          Length = 743

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 157/375 (41%), Gaps = 29/375 (7%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
              ++L V++      + + ++Q    + + + + +   D RI  +N  FR +       
Sbjct: 101 LSADDLDVRLRQTQNRSLIAEIQ----EAMGDIIVIRNMDRRIVEANAVFREVTGCSAPE 156

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG--TLELLSDSVLEYSII 531
                 I        R  +++  +D+   I T F     S     T +L S  +L  SI 
Sbjct: 157 GLSCEEI----GIAFRPGDKAHAYDV--EIATPFGQRIFSWHDVVTRDLASSRLLISSIA 210

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                + +         +RAE+A           D  K   +  VS+E+R PL+ ++G  
Sbjct: 211 RDVTEERLALGERENARLRAEKA-----------DAEKARLLATVSHEIRLPLSGMLGMN 259

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL  +K   LN +Q  Y++ +  S   L+ LV D+LD +T++AG  KLN     L  L+
Sbjct: 260 HLLSQTK---LNEEQRNYLDGMKQSGQSLVQLVEDLLDYSTMEAGRFKLNPRAENLRRLI 316

Query: 652 NEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             + + +A + HE  I I   ++         D  RL Q+   +L NA+ F+  G  V +
Sbjct: 317 ESIVEMLAHRAHEKGIEITSFVTPDVPDYLDFDPARLRQVLFNLLGNAVKFTQVGGVV-I 375

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHG 769
           +A    G+   +V++ G  + +     +F  F        Q  G GLGL+I    +   G
Sbjct: 376 RARMVEGELHITVEDTGPGMSQAEQARIFGEFEQAGPMSQQSGGTGLGLAISARIVREFG 435

Query: 770 GHVSISSSDEGVTTI 784
           G +++ S     +T 
Sbjct: 436 GSLTVFSRKGEGSTF 450


>gi|262163839|ref|ZP_06031579.1| sensor histidine kinase [Vibrio mimicus VM223]
 gi|262027819|gb|EEY46484.1| sensor histidine kinase [Vibrio mimicus VM223]
          Length = 1145

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 174/422 (41%), Gaps = 38/422 (9%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKIANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++ +G  V+L   R  G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPQG-KVVLGVRRVAGQVRIDVWDNGIGIEQDK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI----PS 790
             + +F  F         +G+GLGL+I +   ++ G  +S+ S     +  +  +    PS
Sbjct: 949  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPRQGSVFSLTLERAEPS 1008

Query: 791  KE 792
            ++
Sbjct: 1009 QQ 1010



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKIANETLEE 759


>gi|161486828|ref|NP_719006.2| hybrid sensory histidine kinase BarA [Shewanella oneidensis MR-1]
          Length = 935

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 10/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y+  I
Sbjct: 286 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYINTI 342

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+T LL ++NDILD + ++AG M L      L + L E    I+       + + V  
Sbjct: 343 ERSATNLLAIINDILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDI 402

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA-ARDNGDFIFS--VKNNGS 728
              +  +   D  R+ QI + ++ NA+ F+  GS  V L+  A+ +   +    V + G 
Sbjct: 403 APNVPDNVNGDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGI 462

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +  +SS +  +    
Sbjct: 463 GIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWF 522

Query: 787 RIPS 790
            +P 
Sbjct: 523 TLPL 526


>gi|239993376|ref|ZP_04713900.1| Signal transduction histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 641

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 186/453 (41%), Gaps = 41/453 (9%)

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           DE  E L  +      +  + +++ +F   KS +   D     + ++   +V S      
Sbjct: 55  DERRELLIESGLENVPVFREAYQKEVFEELKSLQQATDRHFAISDKSADTVVFSTMEHTV 114

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +   E+ T+      K        GE+  ++++   +F              + +     
Sbjct: 115 VPNVEDATIATIASRKV-----AFGES--NINDADVLF------------ACAEFAPWNW 155

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-------KSLQGTLELLSDSV 525
           +++       + +  S     +    LFA +I S    R         ++      S   
Sbjct: 156 KVTVLQPADALQSFLSTIAWLTSLVTLFAVVIVSLLMGRVTQVFVVSPIEKIKSAASRIA 215

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +++  + +   Q         D       + +     ++A+  K  F+  +S+E+R+PL 
Sbjct: 216 VDHKKVSIDLQQNDELGSLARDVEAMSGEIEQYVAQAQQANRAKTDFLAVMSHEIRTPLN 275

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I G   LL  ++   L+ KQ QY   + +S++IL  ++ND+LDL+ +++G+ +++ +  
Sbjct: 276 GIQGLATLLLDTQ---LSDKQHQYASDLKSSASILATVINDVLDLSKIESGMSEVDVTEF 332

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L+ +LN++   + T    N+ R+   S + +  +  +D  +L QI   ++SNA+ F+ K
Sbjct: 333 DLDAMLNDLITLLGTNASANSTRLVYKSKNMESVAVTSDITKLRQIIINLVSNAIKFTHK 392

Query: 705 GSTVILKAA--------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGV 754
           G TV + A               + +VK+ G  I  D  + +F++F  +      +  G 
Sbjct: 393 G-TVTISAKLKQPSQDTVSENHLVIAVKDTGIGIEPDRLEHIFDKFTQSDSSITRKYGGT 451

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGL+I +    + GG + + S     +     
Sbjct: 452 GLGLAIAKQLAQILGGDIKVVSKVGEGSCFTVT 484


>gi|157369035|ref|YP_001477024.1| hybrid sensory histidine kinase BarA [Serratia proteamaculans 568]
 gi|157320799|gb|ABV39896.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568]
          Length = 906

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     ++  Q+ Y++ 
Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTE----MSVTQTDYLQT 332

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++ND+LD + ++AG + L +    L + L+EV   +A   HE  + + + 
Sbjct: 333 IERSANNLLTIINDVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLD 392

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNG 727
               +    + D  RL QI + +L NA+ F+  G+  + ++         +    + + G
Sbjct: 393 VHNDVPEQVIGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGQQDRQMELEVQIHDTG 452

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F        RR  G GLGL I +  +   GG +   S     +T  
Sbjct: 453 IGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFW 512

Query: 786 CRI 788
             I
Sbjct: 513 FHI 515


>gi|77747790|ref|NP_636549.2| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|77761272|ref|YP_244134.2| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 292

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 43  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 102

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           SAS+  L  +V+D+LDLA ++AG + ++     L DL   ++         N   +    
Sbjct: 103 SASTRELSEMVDDLLDLAKIEAGRVTISPGWFDLMDLFAALRGMFRPLTDANRTTLIFED 162

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +    + +    FSV++ G  IP +
Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLQGDTHVRFSVQDTGIGIPAE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  ++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 223 LHDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGTVGINSVVGQGSEFFVVLP 280


>gi|42781128|ref|NP_978375.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42737049|gb|AAS40983.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 453

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   +  + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 215 ELGELAHSLNHMSNKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 274 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQ 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK+ 
Sbjct: 334 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDE 391

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 392 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 449

Query: 787 RIPS 790
           ++P 
Sbjct: 450 KLPL 453


>gi|170016544|ref|YP_001727463.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
 gi|169803401|gb|ACA82019.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
          Length = 623

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 156/414 (37%), Gaps = 36/414 (8%)

Query: 389 KDTWHLPNG--QTLHVIVTSNPRGGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSE 445
           + T  + NG    ++ I  S+  G        L+ +V+      N         + H+++
Sbjct: 216 EQTTKIANGDYSMVNHIYGSDELGHLAQSVNELSTRVEESTETVNAERNRLDSVLTHMAD 275

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV      G + + N A       + +       I  +         +  G      ++ 
Sbjct: 276 GVLAANRRGEVTIINQAAADFVGVDRDAAIGQNVIELL---------QLKGKRTLRDMLE 326

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           + DD R  L    +   D +++  +  +      ++ + V      E+          + 
Sbjct: 327 NLDDFRVDLS---DDSKDLLVQAYVSLIKRQSGFISGLVVVLHNITEQQ---------RI 374

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  +  FV +VS+ELR+PLT++  + D L    +         ++  +   +  ++ ++N
Sbjct: 375 DAERRMFVSNVSHELRTPLTSVRSYVDALAEGAIND-PEMAHNFLGVVQNETQRMIRMIN 433

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE---------NNIRIKVISDGK 676
           D+L+L+ +D G M +    I LN L N V       +            N  I+     +
Sbjct: 434 DLLELSRLDQGTMAVKLEVINLNSLFNFVLNRFDMIIENDAKNTETPNKNYSIQREFTSE 493

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  +  Q+   I++NA+ +S  G  +  +  +     I S+ + G  IP+    
Sbjct: 494 DVWVEVDPDKFTQVLDNIMNNAVKYSPDGGVITARLIKTKTRAILSISDQGLGIPKKDLN 553

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++FNRF        R   G GLGL+I +  +    G + + S +   +T    +
Sbjct: 554 NIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENQGSTFYISL 607


>gi|270292777|ref|ZP_06198988.1| sensory box histidine kinase VicK [Streptococcus sp. M143]
 gi|270278756|gb|EFA24602.1| sensory box histidine kinase VicK [Streptococcus sp. M143]
          Length = 449

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 143/380 (37%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +      +   
Sbjct: 75  LNDLSEVIRLTQENLEQETKRLNSILSYMTDGVLATNRRGQITMINDMAKKQLGIVKEEA 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   I     D + +    L L     + +++I   
Sbjct: 135 LNKSILELL-----KIEDEYELRDLITQIPELMIDSQNANGEYLSLR----VRFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L   +     +++     +  ++ +V D+L L+ +D    +L+   I     +  +
Sbjct: 235 DEGAL--YDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATTRLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   ++  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRSQDEEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+K+ G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|228910523|ref|ZP_04074337.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL
           200]
 gi|228849087|gb|EEM93927.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL
           200]
          Length = 484

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ + P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQM-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + E  I I +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHSSPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|172057086|ref|YP_001813546.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989607|gb|ACB60529.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 679

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 155/376 (41%), Gaps = 24/376 (6%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ L  +     K   + ++ + E +     D +  L N A   ++++    L       
Sbjct: 312 RMSLYEQMEYERKETAQLLNSVREAILYIKHDEKTILGNQALFDIFES----LQIEEDND 367

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           ++     R     +  D   A    F+          E+LS  + E       +      
Sbjct: 368 SMTFLEVRPETMFEQVDQKEAFEAYFE----------EVLSGQIPEGMFSLSIDQGEYFI 417

Query: 542 FVNVTDSVRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            V   + + +E+A     +     A  + D +K+  V  VS+ELR+PL++I GFT+L+  
Sbjct: 418 QVYAEEIMLSEQAKGTILVFRDVTAETEVDRMKSELVSTVSHELRTPLSSIYGFTELMLK 477

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            KL     +  +Y++ I   S  L +LV+D L++  +++G    +     L D + E  +
Sbjct: 478 RKLDP--ERNKRYLQTIHDESKRLTDLVSDFLNVQRMESGKHSYDKEVFDLIDTVREQTR 535

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                  ++ +++ V  +       AD+  + Q+   +L NA+ +S  G  V++     +
Sbjct: 536 FYQASTEQHRLQLDVD-ENHEFLIHADKNSMKQLLGNLLHNAIKYSPDGGDVVISLTHHH 594

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                SV++ G  IP      +F++F    +   R   G GLGLSI +  +  H G++ +
Sbjct: 595 NQIELSVRDFGLGIPSSAMPHLFSKFYRVDNSDSRKIGGTGLGLSICKEIVRAHDGNIDV 654

Query: 775 SSSDEGVTTINCRIPS 790
            S     T     +PS
Sbjct: 655 ESILGEGTVFKVLLPS 670


>gi|260767346|ref|ZP_05876285.1| aerobic respiration control sensor protein ArcB [Vibrio furnissii
           CIP 102972]
 gi|260617669|gb|EEX42849.1| aerobic respiration control sensor protein ArcB [Vibrio furnissii
           CIP 102972]
          Length = 781

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 156/398 (39%), Gaps = 23/398 (5%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +          + +   +  +   + +      +    ID   + +            N
Sbjct: 122 RIKAEEAREEAMVDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNSKCEFSGCN 181

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLE 519
            A   L    E+ L        +  T    Y +     +       FD+ R  + +  LE
Sbjct: 182 RAMEELTGKRESDL--------VGLTPWDVYRKEIAQSIVETDQQVFDNNRSLTYEQWLE 233

Query: 520 LLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                    E   +P  +       +        ER      E+L KA   K +F+  +S
Sbjct: 234 YPDGRKSYFELRKVPFYSKDGRHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTIS 291

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  I+G + +L  ++   L+ +Q ++++ I+ S+  L N+ NDI+D+   D   
Sbjct: 292 HELRTPLNGIVGLSRMLLDTQ---LDPEQRKHMQTINVSAVTLGNIFNDIIDMDKFDRRK 348

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILS 696
           ++L  + +   + + E++   A    +  +R  +     L + V  D  RL Q+   ++S
Sbjct: 349 LELFPAPLNFEEFVAELESLSALMAEQKGLRFDLERLTDLPALVEVDATRLRQVLWNLIS 408

Query: 697 NAMDFSSKGSTV-ILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQ 750
           NAM F+ +G  V  + A  +    + +  +++ G  IPE     +F  +           
Sbjct: 409 NAMKFTKEGGVVMSVSAEVEGDFANIVMDIEDTGIGIPESELDKIFAMYYQVKSGKDNLH 468

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G G+GL++    INL GG +S+SS +   +T    I
Sbjct: 469 AVGTGIGLAVSRQLINLMGGDISVSSEEGFGSTFTVTI 506



 Score = 41.5 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 11/163 (6%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+   
Sbjct: 118 EIEERIKAEEA--REEAMVDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNSKC 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR---KLFKEEIKKRMISSSALEKNFCETVSTLE 270
           +    N + ++ T                  ++ +  ++              E      
Sbjct: 176 EFSGCNRAMEELTGKRESDLVGLTPWDVYRKEIAQSIVETDQQVFDNNRSLTYEQWLEYP 235

Query: 271 HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
            G    +++ +V          G  G   D+++     + L  
Sbjct: 236 DGRKSYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|229121553|ref|ZP_04250780.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201]
 gi|228662017|gb|EEL17630.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201]
          Length = 417

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 179 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 237

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 238 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKK 297

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S +   V ++A ++ G  +  VK++
Sbjct: 298 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVIKVKDD 355

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 356 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 413

Query: 787 RIPS 790
           ++P 
Sbjct: 414 KLPL 417


>gi|310830266|ref|YP_003965366.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare
           Y25]
 gi|308753172|gb|ADO44315.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare
           Y25]
          Length = 715

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 120/258 (46%), Gaps = 2/258 (0%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT            + + L ++   L +    K+ FV ++S+ELR+PL  ++    LL
Sbjct: 16  EQQTSQLEEQRDALAASRQQLADQAGDLARESRYKSEFVANMSHELRTPLNALLIMARLL 75

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++  +L+ +Q Q+ E I +S   LL L+NDILDL+ ++AG + ++       D+   +
Sbjct: 76  SENRPHNLSPEQIQWAETIESSGRDLLGLINDILDLSRIEAGKVDVDPEVTQPKDVAARM 135

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            ++ A +  E+ +++       +     D  +L QI    LSNA+ F+ KGS  +  A  
Sbjct: 136 MRAFAVQASESGLKLVSEVADDVPEITTDVGKLEQILRNFLSNALKFTQKGSVTLSVARS 195

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                 FSVK+ G  I  +   +VF  F        RR  G GLGLSI      + GG V
Sbjct: 196 GAETVTFSVKDTGIGIAAEQHDAVFEAFRQADGSISRRFGGTGLGLSISRDLAGILGGDV 255

Query: 773 SISSSDEGVTTINCRIPS 790
            + S+    +T    +P 
Sbjct: 256 MLESTPGKGSTFILTLPL 273


>gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter
            succinogenes subsp. succinogenes S85]
          Length = 1260

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 140/297 (47%), Gaps = 16/297 (5%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            F  I  + D E  S   +  LLSD  +E   +    A+            + +  L +  
Sbjct: 824  FTTIERNEDGEVVSFVLSFMLLSDDQVEKLELDAKIAE------QNDLLEKQQVMLQKAL 877

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               + +D  K +F+ ++S+++R+P+  I+GFTDL           +   Y+  +  SS  
Sbjct: 878  SMAQSSDRAKTTFLSNMSHDIRTPMNAIVGFTDLAMAHI--DEKDQVLDYLHKLGQSSNH 935

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LL+L+ND+LD++ +++G M L+     L +++N +K  +   ++  N+   V  D     
Sbjct: 936  LLSLINDVLDMSRIESGKMVLSEKNEDLVEIVNALKDIVQADVNAKNLVFDVEMDISESG 995

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPED 733
             V D+ RL Q+   +LSNA+ ++  G ++ +  +       D+  + F +++NG  +  D
Sbjct: 996  IVCDKLRLNQVLLNVLSNAIKYTQAGGSIHMHISEKESMKPDSSMYEFRIRDNGMGMNPD 1055

Query: 734  MCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              K+++  F           +G GLG+SI ++ + + GG + I S +   T +   +
Sbjct: 1056 FLKTIYEPFTRANSSTVSGIQGTGLGMSITKNIVEMMGGRIEIFSEENKGTEVVIDL 1112


>gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 902

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 10/251 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++++    E  L +  E    A   K+ F+ ++S+E+R+P+  IIG   L   +    L+
Sbjct: 143 DISNRKLQEGKLKQAMEEAESATRAKSDFLANMSHEIRTPMNAIIGLAHLALRT---GLD 199

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ  Y++ I  S   LL ++NDILD + ++AG + L  +   L  +L+ +   +  K  
Sbjct: 200 PKQRDYLQKIHNSGKHLLGIINDILDFSKIEAGKLDLENAEFDLERVLDNLAALLGEKAE 259

Query: 664 ENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--- 718
              + +      G   S + D  RL QI     +NA+ F+ +G  TV  +   + GD   
Sbjct: 260 AKGLELIFDIGPGLDRSLIGDPLRLGQILINYANNAVKFTERGEVTVRARCREERGDSLL 319

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F V + G  +  +    +F  F        R   G GLGL+I      + GG V + S
Sbjct: 320 LHFEVSDTGIGLSAEQKAKLFQSFQQADTSTSRKYGGTGLGLAISRKLAEMMGGEVGVDS 379

Query: 777 SDEGVTTINCR 787
                +T    
Sbjct: 380 EPGKGSTFWFT 390


>gi|41016070|dbj|BAD07401.1| histidine kinase [Cochliobolus heterostrophus]
          Length = 359

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 13/248 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            AE       +   +A + K+ F+ +VS+ELR+PL  +IG ++LLK S    LN +QS Y
Sbjct: 1   EAEANAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKAS---PLNGEQSGY 57

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I   +  LL+++ND+LD + ++AG M +    I LN+ + EV +++A    E  ++ 
Sbjct: 58  ADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKT 117

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
               +       + D  RL QI   +LSN+  F+ +GS V ++A  D       D   SV
Sbjct: 118 IEQLELDPEMLVMGDPVRLHQILMNLLSNSYKFTPRGS-VTVRAVVDQETSEWADVTCSV 176

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
            + G  IP++  + +F  F    ++      G GLGLSI ++ I  +  G V + S    
Sbjct: 177 IDTGIGIPDEQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGK 236

Query: 781 VTTINCRI 788
            TT+   +
Sbjct: 237 GTTVTFSL 244


>gi|253998422|ref|YP_003050485.1| histidine kinase [Methylovorus sp. SIP3-4]
 gi|253985101|gb|ACT49958.1| histidine kinase [Methylovorus sp. SIP3-4]
          Length = 1151

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    + +  L +  +   +A++ K+ ++  +S+ELR+PL +I+G+  LL
Sbjct: 662 NRQTGLLLREIELHRQTDAELQQARQVAEQANQAKSRYITGISHELRTPLNSILGYAQLL 721

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 S+ + +   +  I  S   LL+L+   LD+A +++G +  +   + L + + +V
Sbjct: 722 DNDV--SIPAARQPAIRVIRRSGEHLLSLIEGTLDIARIESGKLTFDIKPLRLPEFIQQV 779

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     +       G L   V AD++RL QI   IL NA+ F+ +G  V  +  
Sbjct: 780 VDMFELQARNKGLTFSYQLTGDLPDMVRADQKRLSQILINILGNAVKFTRQGGVV-FRLR 838

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
                 +  +++ G  I ++    +F  F   +  +     G GLGL+I +    L GG 
Sbjct: 839 YARELAVIEIEDTGPGILKEELDEIFEPFARGSAANNSTVAGTGLGLTISKMLTQLMGGE 898

Query: 772 VSISSSDEGVTTINCRI 788
           +S+ S     T    R+
Sbjct: 899 LSVRSVVGSGTVFQIRL 915


>gi|254458425|ref|ZP_05071850.1| PAS/PAC sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
 gi|207084733|gb|EDZ62020.1| PAS/PAC sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
          Length = 514

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 160/381 (41%), Gaps = 16/381 (4%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           ++ E++    +  +K         + ID  S  V+     G I  +N AF  +     + 
Sbjct: 142 FVVEHIETLKNRNSKLENKNTQLNKAIDA-SVLVSKSNTKGIITYANQAFIEVSGYSLDE 200

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L   +H  NI         E + +      I S    R  L+   +   D  ++ +I+P+
Sbjct: 201 LIGNSH--NIVRHSD---TEDELYHDMWKTIRSKKVWRGMLKNKAKDGHDYYVDVTIVPV 255

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            N +  ++             L  +     +    K  F+ ++S+ELR+PLT I+GF+ +
Sbjct: 256 LNTKNRISEFLSIRYEVTNLVLATRKAQESQM--AKEQFLANMSHELRTPLTAILGFSQM 313

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +            S  V  I+ +   LL  VN ILDL+ +++G M   +    L  L  E
Sbjct: 314 IMARA--DTPEIISNCVSKINIAGINLLTQVNTILDLSKIESGQMTYQFDNFQLKPLFEE 371

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++  + ++  + NI + ++          D+  + Q+F  +LSNA+ F++  +TV +   
Sbjct: 372 LRVILESQAKDKNISL-IMPMIDKEEMHGDKLSIKQVFMNLLSNAIKFTAINTTVEISYT 430

Query: 714 R--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFI-NLH 768
              +  + IF V + G  + E   +++F  F    +       G GLGL+I +  + ++H
Sbjct: 431 CNIEQKEHIFKVYDQGDGVDEKDIQTLFEPFYQGENSRINATPGTGLGLAICKKIVTDVH 490

Query: 769 GGHVSISSSDEGVTTINCRIP 789
            G + + +   G +     IP
Sbjct: 491 KGKIGVENIKNGGSCFYMTIP 511


>gi|195978473|ref|YP_002123717.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195975178|gb|ACG62704.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 432

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 157/374 (41%), Gaps = 32/374 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +  +  E +   L K       HL+ G+ +      + L++ +  + +   +        
Sbjct: 82  SDLLQKEARLKALSKNVEAVTSHLTMGMLLVSNQRELLLTSKSLPAYFPEAKPPFVVLED 141

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
           ++ I              DL A +   F D++++L+  L  L D   +LE +++P+ N  
Sbjct: 142 LKRI--------------DLIALVNQVF-DQKQTLKKELTGLHDGDLILEVTLVPIFNQS 186

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++         +    L     A+R  + +   F+ + S+ELR+P+T+I GF + +K  
Sbjct: 187 HVV---------KEVLVLLYDLTAIRHYERLNLEFIANASHELRTPVTSIKGFAETIKEM 237

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                + K+  +++ I   S  L  +V  +L L+   A    L+ +   L   L    QS
Sbjct: 238 PDDETSLKE-DFLDIIYNESLRLERIVEHLLTLSK--ANKTPLDLTEFQLRSFLLYTGQS 294

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  ++ +  + +    +  +    +D+  L QI   +LSNA+ ++  G  + L + R  G
Sbjct: 295 MRPQLEQKQLELSYALEDSI-VVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQRVAG 353

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +V + G  I +     +F RF         Q  G GLGL+IV+    L GG ++++
Sbjct: 354 GVAITVADTGIGISQIELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQLLGGQITVT 413

Query: 776 SSDEGVTTINCRIP 789
           S     +     +P
Sbjct: 414 SQLGEGSQFTLFLP 427


>gi|315181101|gb|ADT88015.1| sensor histidine kinase FexB [Vibrio furnissii NCTC 11218]
          Length = 781

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 156/398 (39%), Gaps = 23/398 (5%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
            +          + +   +  +   + +      +    ID   + +            N
Sbjct: 122 RIKAEEAREEAMVDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNSKCEFSGCN 181

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK-SLQGTLE 519
            A   L    E+ L        +  T    Y +     +       FD+ R  + +  LE
Sbjct: 182 RAMEELTGKRESDL--------VGLTPWDVYRKEIAQSIVETDQQVFDNNRSLTYEQWLE 233

Query: 520 LLSDS--VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
                    E   +P  +       +        ER      E+L KA   K +F+  +S
Sbjct: 234 YPDGRKSYFELRKVPFYSKDGRHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTIS 291

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  I+G + +L  ++   L+ +Q ++++ I+ S+  L N+ NDI+D+   D   
Sbjct: 292 HELRTPLNGIVGLSRMLLDTQ---LDPEQRKHMQTINVSAVTLGNIFNDIIDMDKFDRRK 348

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILS 696
           ++L  + +   + + E++   A    +  +R  +     L + V  D  RL Q+   ++S
Sbjct: 349 LELFPAPLNFEEFVAELESLSALMAEQKGLRFDLERLTDLPALVEVDATRLRQVLWNLIS 408

Query: 697 NAMDFSSKGSTV-ILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQ 750
           NAM F+ +G  V  + A  +    + +  +++ G  IPE     +F  +           
Sbjct: 409 NAMKFTKEGGVVMSVSAEVEGDFANIVMDIEDTGIGIPESELDKIFAMYYQVKSGKDNLH 468

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G G+GL++    INL GG +S+SS +   +T    I
Sbjct: 469 AVGTGIGLAVSRQLINLMGGDISVSSEEGFGSTFTVTI 506



 Score = 41.5 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 11/163 (6%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+   
Sbjct: 118 EIEERIKAEEA--REEAMVDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNSKC 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR---KLFKEEIKKRMISSSALEKNFCETVSTLE 270
           +    N + ++ T                  ++ +  ++              E      
Sbjct: 176 EFSGCNRAMEELTGKRESDLVGLTPWDVYRKEIAQSIVETDQQVFDNNRSLTYEQWLEYP 235

Query: 271 HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
            G    +++ +V          G  G   D+++     + L  
Sbjct: 236 DGRKSYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|189467204|ref|ZP_03015989.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM
           17393]
 gi|189435468|gb|EDV04453.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM
           17393]
          Length = 720

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 179/400 (44%), Gaps = 30/400 (7%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG--------PDGRIKLSNPAF 463
            + +F  L     LE +   + + Q  T   ++  + V              I  S+   
Sbjct: 328 LVILFFQLRRNKILE-RLQLVEQNQRFTHSKMAMALEVVDLLPWQWDIRTDEITYSSYKP 386

Query: 464 RSLWKTEENRLSPGTHIRN---IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
               K E + ++  TH+ N     +   R        D+ A  +    +E +  +     
Sbjct: 387 IEQGKKEVSEMTYATHVNNYLTFVSEEDRERIRQVFKDVRANKVDKIKEEYRVHRPGKPD 446

Query: 521 LSDSVLEYSIIPLPNAQ------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            S+  +E         +       + + + +T+   AER L    E   +++ +K++F+ 
Sbjct: 447 DSEDWMEARAFVEQYDEKGNPLIVVGSSLFITERKVAERELIAAKERAEESNRLKSAFLA 506

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  IIGF+ +L  ++      ++ +YV  I  ++ ILL L+ND+LDL+ ++
Sbjct: 507 NISHEIRTPLNAIIGFSSILTMTE---DEEEKKEYVSIIEKNNGILLQLINDVLDLSKIE 563

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG---SFVADRQRLLQIF 691
           AG++ L YS   LN +L  +K  + +++      +++I +  +       +++ RL Q+ 
Sbjct: 564 AGVLDLYYSEFALNGVLMTLKGVVESRLQS---SVELIFEPGMPDYYVVCSEKNRLQQLV 620

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
              L+NA  F+S GS +         +  + V + G+ IPED    +F RF+       +
Sbjct: 621 LNFLTNACKFTSTGS-IRYGYEVREKEIYYYVTDTGTGIPEDKLHLIFERFIKLDSF--K 677

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +G GLGL I +  I   GG + ++S     +T    +P K
Sbjct: 678 QGTGLGLPICQLIIQNMGGEIGVNSKLGEGSTFWFTLPLK 717


>gi|81299733|ref|YP_399941.1| multi-sensor signal transduction histidine kinase [Synechococcus
           elongatus PCC 7942]
 gi|20270658|gb|AAM18355.1|AF299076_1 sensor kinase NblS [Synechococcus elongatus PCC 7942]
 gi|81168614|gb|ABB56954.1| multi-sensor signal transduction histidine kinase [Synechococcus
           elongatus PCC 7942]
          Length = 664

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 165/406 (40%), Gaps = 38/406 (9%)

Query: 410 GGTIWMFENLTVQVDLETKYN----TLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFR 464
           G  I  F ++  Q++     N    T  K + ET+   +++G  +   D  + L NPA  
Sbjct: 247 GELIASFNDMAEQLEGYAAQNIDELTSEKAKLETLVSTIADGALLLDADLNLVLVNPAAI 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++  E   L     I ++ +  ++  ++          I + D E   L+ TL   S+ 
Sbjct: 307 RIFGWEGRSLKGDDVIDHLPSPLAQELHDP------LKAIANGDREAVELRLTLPERSNR 360

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +   +  + +                 R          + +E K+ F+ +VS+ELR+PL
Sbjct: 361 TVRILVSNVLDTARANVKGIAVTVQDITRE--------VELNEAKSQFISNVSHELRTPL 412

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  F + L          ++ +++   +  +  L  LVND+LDL+ +++   + N+  
Sbjct: 413 FNIKSFIETLHDYGDDLSEEERREFLSTANHETDRLTRLVNDVLDLSRLESNR-RYNFEG 471

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           I L   + +  ++      E  I ++      L +  A+   LLQ+F+ ++ NA+ F++ 
Sbjct: 472 IDLVQPIEQTLRTYQLNAREKGIELRSEIARDLPAVRANYDLLLQVFANLVGNALKFTAS 531

Query: 705 GSTVILKAARDNG-----------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           G  V ++A                      +    + + G  I  +  +++F+RF    +
Sbjct: 532 GGCVAMRAYLVGQPLRTEAVNHSEIVSSLPNIRIEINDTGIGIDAEDQEAIFDRFFRVEN 591

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           R     G GLGLSIV + +  H   + + S     TT    +P  +
Sbjct: 592 RVHTLEGTGLGLSIVRNIVEKHQSRIHLISEVGIGTTFWFDLPIYQ 637


>gi|78048723|ref|YP_364898.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037153|emb|CAJ24898.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1177

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 9/255 (3%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                     + E  LT++ + L +     K+ F+  + +E+R+P+T ++G ++LL  +  
Sbjct: 781  WAWRKRVRRQQEWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLAT-- 838

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              LN+KQ  YV+ I  + T LL LVND LDLA ++AG ++L         L  E+   + 
Sbjct: 839  -PLNAKQRGYVDAICKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELADFMH 897

Query: 660  TKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   +R++  +        V D  R+ QI   +L NA+ F+ +G  V L  ++    
Sbjct: 898  PIADARGLRLEYRNQLPPHVVVVGDATRVRQILINLLGNAIKFAERGE-VSLTVSQHGDA 956

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  I  +  K +F RF          +  G GLGL+I +       G + + 
Sbjct: 957  LRFKVRDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVR 1016

Query: 776  SSDEGVTTINCRIPS 790
            S     T     +P 
Sbjct: 1017 SRLGVGTQFTVDLPL 1031


>gi|120555598|ref|YP_959949.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120325447|gb|ABM19762.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 784

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             + +   +A+  KN F+ +VS+ELR PL +++G+ +LL  +    L+ +Q +YV  +  
Sbjct: 244 QGERDEAIRANHAKNQFLANVSHELRIPLQSVLGYANLLTDT---PLDQEQREYVNTLLN 300

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S  L +++ND+LD+++++AG ++L      L + LN++   + ++  E  + ++V  D 
Sbjct: 301 ASESLSSIINDLLDISSMEAGKLELEAIPFDLRETLNDLIHMLGSRAREKGLALEVRVDE 360

Query: 676 KLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSI 730
            L      D  R+ Q+   +LSNA+ F+  G     + +   ++       +V++ G  I
Sbjct: 361 NLPWALTGDPVRIRQVLLNLLSNAIKFTDSGHVLISIEILGRKEGKVRLRLAVEDTGVGI 420

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    V+  +V    R QR+  G GLGL+I    ++L GG + + S     +T    +
Sbjct: 421 NPEDIPLVYEPYVQLGQRFQRQLPGAGLGLTICRQLVDLMGGSMDLESRPGEGSTFWVEL 480

Query: 789 PSKE 792
             +E
Sbjct: 481 SLQE 484


>gi|189346221|ref|YP_001942750.1| histidine kinase [Chlorobium limicola DSM 245]
 gi|189340368|gb|ACD89771.1| histidine kinase [Chlorobium limicola DSM 245]
          Length = 691

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 66/331 (19%), Positives = 143/331 (43%), Gaps = 23/331 (6%)

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           +   +EN ++PG  + ++    S  +N+         +  +  ++++ ++  LE      
Sbjct: 206 IINEKENIIAPGNPLHDLYTIISMLHND------LKELQKTEKEQKQQIEEALEHARTLN 259

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           ++ S       +       + ++      L +  +    A + K+ F+ ++S+E+R+PL 
Sbjct: 260 IKLSEEKKNVEKKEQIQQILIEN------LKKAKKEAETASQAKSEFLANISHEIRTPLN 313

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG +++L  + L  L  +Q  Y   I  S+  L  L+ +ILD + V++G +    S  
Sbjct: 314 GIIGMSEMLLDASLDRL--QQRHYCATIFVSAKKLNQLITNILDFSKVESGQLDKETSVF 371

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
            +  + ++V   +     +  +++ + +  ++    +     L Q+   +L NA+ F+ +
Sbjct: 372 DIGTICHDVFCLLNENAIKKGLQLTIDTSNEIPESIIGYPVYLRQVLINLLQNAIKFTYR 431

Query: 705 GSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
           G  V L     +          SV++ G  IPE   K +F RF        R   G GLG
Sbjct: 432 GE-VALNIEPVSDTPGKLILRISVRDTGIGIPEAQKKLIFQRFTQLDATATRKEGGAGLG 490

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I    +   GG +++ S++   +     +
Sbjct: 491 LAITSKLVEYMGGTLNLDSTENKGSEFWFTL 521


>gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1474

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +  +L+ K  QYVE + 
Sbjct: 931  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREHE--TLSPKGVQYVELME 988

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+L+   ++       EN +       
Sbjct: 989  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNELVVSFQKEFRVLSEENEVSFTFQLP 1048

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNNGSSIPE 732
                   AD+++L  +   I+SNA  F+  G ++ + A  A D       V++NG  IP+
Sbjct: 1049 DAAIMIWADKEKLSIVIRNIISNAFKFTPSGGSIHVVAGLAEDGEHCFLRVEDNGIGIPQ 1108

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    VF RF    +      +G G+GL++ +  +NLH G +   S +   T     +
Sbjct: 1109 NKLTEVFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGVIRAESPEGKGTVFIVEL 1166


>gi|254446415|ref|ZP_05059891.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260723|gb|EDY85031.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 780

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 129/290 (44%), Gaps = 15/290 (5%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEI 568
           RK     + +L DS+           Q +       + + A+R   L E  E    A E 
Sbjct: 215 RKRNSDEIGMLVDSINFMLASVRQRDQAINETNRNLEQLVADRTAKLVEARERAETALET 274

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+ELR+P+  IIG + +L+      L+  +++ +E I  SS  LL+L+NDIL
Sbjct: 275 KSDFLATMSHELRTPMNAIIGMSSVLQ---FEDLDESRARQIEVIRKSSVNLLDLINDIL 331

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRL 687
           D + ++A  ++L  +   L   + E     A     N +   V  D  L S +  D  R+
Sbjct: 332 DFSKIEANRLELENNAFDLVACIEEAMDITAAAKRNNRLVYCVNFDPTLPSHIKGDVTRV 391

Query: 688 LQIFSKILSNAMDFSSKGSTVILKA------ARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            QI   +L+NA  F+ KG TV +         R +     SV++ G  IPE+  KS+F  
Sbjct: 392 RQILVNLLNNAFKFTKKG-TVTMDVFHLPADRRGSERIQISVRDTGIGIPEESLKSIFES 450

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        R   G GLGL+I        GG + + S     +  +  +P
Sbjct: 451 FTQANGSTSREFGGTGLGLTISYRLALAMGGDIKVESEYGTGSVFHFTMP 500


>gi|47569834|ref|ZP_00240503.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47553480|gb|EAL11862.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 453

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   +E + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 215 ELGELAHSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 274 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQ 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A +  G  +  VK+ 
Sbjct: 334 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVIEVKDE 391

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 392 GMGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 449

Query: 787 RIPS 790
           ++P 
Sbjct: 450 KLPL 453


>gi|322391843|ref|ZP_08065308.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780]
 gi|321145323|gb|EFX40719.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780]
          Length = 449

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 140/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   ++    E + +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLHSILSYMTDGVLATNRRGQITMINDMAKNQLGIESDEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                +              D ++L   I  S D    S     E +S  V  ++++   
Sbjct: 135 LNKNILE--------LLKIEDEYELKDLITQSPDLMIYSQNLNGEYISLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALS--EPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSNLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +  E    I             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKIRAQDEEKKYEIVRDYPINSVWVEIDTDKMTQVIDNILNNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP++    +F+RF          + G GLGL+I +  +  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKEDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|303247968|ref|ZP_07334235.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490692|gb|EFL50595.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 655

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 157/418 (37%), Gaps = 59/418 (14%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT------EENRLSPGTHI 480
            + +   +   +  ++ +EG+     DGRI  +N A   +          +  +  G  +
Sbjct: 229 KRLSAAQRNYRDIFENATEGIFQTTFDGRILSANAAMADILGYDSPQALMDGVVDVGRQL 288

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            +                  A ++  F   R      + L    V + +  PL    TM 
Sbjct: 289 FHNPEERRDMLRRLVDEGSVAGLVVRFV-RRDGQTIWVRLNIRLVRDATGTPLYTEGTMS 347

Query: 541 TFVNVTDSVRAERALTEKNEALRKA-------------------------DEIKNSFVQH 575
              +VT  +RAER L   N  LR+A                         D +K+ F+  
Sbjct: 348 ---DVTARLRAERRLEILNRHLREAVKERTGRLAEKAAELEAANTRLTELDRLKSGFLAT 404

Query: 576 VSYELRSPLTNIIGFTDLLKTS----------------KLGSLNSKQSQYVEYISASSTI 619
           VS++LR+PLT+I+GF  L+                   +L     + +  +  I +    
Sbjct: 405 VSHDLRTPLTSIMGFAKLIARDFNRFFAPFAQGSGPGDRLRRQAKRITDNLGIIESEGER 464

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLG 678
           L  L+ND LDL+ ++AG  +   + +V   ++     +++        +   +     L 
Sbjct: 465 LTRLINDFLDLSKIEAGRAEWRDANVVPAAIITRAADAVSADFEAKPEVAFSMDLTPDLP 524

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  RL Q+   +L NA  F+ +G  V L+A R +G     V + G  +P +  + +
Sbjct: 525 ELWIDPDRLSQVLVNLLGNAAKFTDEGH-VRLRAFRRDGMLRVEVADTGQGVPRESLEKI 583

Query: 739 FNRFVSN------AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F++F             +R+G GLGL+I    +  + G +   S     +T    +P 
Sbjct: 584 FDKFHQAQAGDTVEEGRRRKGTGLGLAICRQIVEHYNGRIWAESELGRGSTFIMELPL 641



 Score = 41.1 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           S    ++    +  +I  N T  I     +  +   N +  ++   D    +     D +
Sbjct: 226 STVKRLSAAQRNYRDIFENATEGIFQTTFDGRILSANAAMADILGYD----SPQALMDGV 281

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGG 411
           ++  R     PE+      +  +     +    +      +GQT+ V +      +  G 
Sbjct: 282 VDVGRQLFHNPEER-RDMLRRLVDEGSVAGLVVRFVRR--DGQTIWVRLNIRLVRDATGT 338

Query: 412 TIW---MFENLTVQVDLETKYNTLVKVQGETI 440
            ++      ++T ++  E +   L +   E +
Sbjct: 339 PLYTEGTMSDVTARLRAERRLEILNRHLREAV 370


>gi|291618633|ref|YP_003521375.1| BarA [Pantoea ananatis LMG 20103]
 gi|291153663|gb|ADD78247.1| BarA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 14/243 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+ ++S+ELR+PL  ++GFT  +LKT     L + Q  Y+  
Sbjct: 297 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKT----PLRTTQRDYMLT 352

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++ND+LD + ++AG + L      L   L+E    +A   HE  + + V+
Sbjct: 353 IERSANNLLSIINDVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVV 412

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNN 726
            D  +  + + D  RL QI   ++ NA+ F+ KG T+ L+  +      + +    V++ 
Sbjct: 413 CDNSVPDNVIGDALRLQQILINLMGNAIKFTEKG-TINLRVEQHTITATHVELEIQVRDT 471

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+    +F  F        RR  G GLGL I +  +    G ++  S     +T 
Sbjct: 472 GIGISEEQQAQLFQAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGSTF 531

Query: 785 NCR 787
             R
Sbjct: 532 WVR 534


>gi|289664296|ref|ZP_06485877.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            campestris pv. vasculorum NCPPB702]
          Length = 1191

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 13/253 (5%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIF 721
            +      D  L      D  R+ QI   +L NA+ F+ +GS V L+              
Sbjct: 906  LAFHCALDDALPPALHGDASRVQQILLNLLFNAIKFTERGS-VHLRVAALPEHTQQGIRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  +  +    +F RF          +  G GLGL+I        GG V++ S  
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVISEL 1024

Query: 779  EGVTTINCRIPSK 791
                     +P +
Sbjct: 1025 GQGACFVVELPLR 1037


>gi|149174016|ref|ZP_01852644.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846996|gb|EDL61331.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 540

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 128/279 (45%), Gaps = 10/279 (3%)

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G      +   +Y   P  +++      N   +++  R           A++ K++F+ +
Sbjct: 94  GITRAFEEGAFDYIPKPATDSEIKARVRNAIRALQLLREQKTLRIQAEAANQSKSAFLAN 153

Query: 576 VSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +S+E+R+P+T I+G+TD+L+  +K   L    S  ++ I  +   L+ L+NDILDL+ ++
Sbjct: 154 MSHEIRTPMTAILGYTDILELEAKSLQLPELISDSLDTIKRNGGHLMELINDILDLSKIE 213

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           AG + +         ++ EV + +  +     ++++      L     +D  R+ QI   
Sbjct: 214 AGKLDVESICCSPQTIVEEVLELVQVRAEAKGLKLEASYQFPLPAEIHSDPTRIRQILIN 273

Query: 694 ILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           ++ NA+ F+  G T+ L  +      +     F+V + G  + E    ++F  F      
Sbjct: 274 LIGNAIKFTEVG-TIRLNTSFLENPGEEPQVQFTVIDQGIGMTEAQMSNLFRPFSQADSS 332

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             R   G GLGL+I +   ++ GG +S++S     +  +
Sbjct: 333 TTRKYGGTGLGLTICKRLTDVLGGDISVTSKLNQGSQFS 371


>gi|262382235|ref|ZP_06075373.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262297412|gb|EEY85342.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 846

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 101/529 (19%), Positives = 225/529 (42%), Gaps = 30/529 (5%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            I+ +    GE    ++ +    +  +      I   +     ++D+N  L   N++ ++
Sbjct: 190 DILSIAIERGEVQGLVEHTAMQVMKSETKFKI-IFDKMPWGAELYDENGVLVDINQADLD 248

Query: 338 LWEIDLAF-----LATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           ++ +         +  NP+  + + + L++   +   LN+     +    Y S    K  
Sbjct: 249 IFGVTREQAVGLNMFENPNIPKYVNQSLKNGKDIFFPLNYDFKVASQNGYYDSHHDSKTK 308

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
             L  G TL   +  N  G    +F++    +  E   N+L +++    D     +  + 
Sbjct: 309 HLLVKGVTLKDSLD-NIFGYIYIVFDDTENHIKREQIENSLARLKVSV-DTGDSILWEYD 366

Query: 452 -PDGRIKL---------SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
             + ++ +         +N   +++                      R YN+     L  
Sbjct: 367 VENDKLTVDFGLNEDINNNEGLKAIHDYNFKNQEDYKS-SIHPDDFDRVYNKQFKPLLQG 425

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            I       R+ L G     + +V  Y      +  T    V+ T ++  +R    +   
Sbjct: 426 KINNFVAAYRRILNGKTFWFNSNVRSYK---FNDDGTPNRIVSYTSNITQQREKEIELIK 482

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++AD++K++F+ ++S+E+R+PL  I+GF++++          ++  Y++ I  ++ +LL
Sbjct: 483 VKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAE---IDDEVERQSYLDIIHKNNDLLL 539

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++DILD + ++AG M  ++  + + D+  E+  + + KM   ++ +    D       
Sbjct: 540 QLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPS-DVDLIFDLDSPSVIVK 598

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +R++Q+ S  ++NA+ F++KGS + +    +       VK+ G  I  +  + +F R
Sbjct: 599 TDERRVMQVISNFVNNAIKFTTKGS-ITIYYEIEGDFIRVCVKDTGIGISAENQRRIFER 657

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+       ++G GLGL+I  + I   GG + + S + G +T    +P 
Sbjct: 658 FIKVDTF--QQGTGLGLTISRTIIEALGGKIGVDSEEGGGSTFWFTLPL 704


>gi|149189035|ref|ZP_01867324.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           shilonii AK1]
 gi|148837221|gb|EDL54169.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           shilonii AK1]
          Length = 779

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/270 (25%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +  +   +PN++ MLT V+   S   +R AL + +    +A + +  F+  +S+ELR+P+
Sbjct: 174 IRVTKRTIPNSEKMLTVVDDVTSEYQQRSALEKAHWLAEQAVQSRERFLATMSHELRTPI 233

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            ++IG  +LL        +  +   ++ + +S+  L  LVNDILD + +D+  + L    
Sbjct: 234 ASMIGLLELLSYENRNIADDYK---LKSLMSSAKNLQLLVNDILDYSKLDSQGISLVEEF 290

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSS 703
           +   DLL ++ +       E  +  +   D  ++   + D  RL QI + +LSNA+ F+ 
Sbjct: 291 VSYTDLLGDLVRLHEASARERGLVFETQWDSSEIEFILTDALRLSQIVNNVLSNAVKFTE 350

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           +G  + +       +    V + G  I  D  +S+F+ F         +  G GLGL+IV
Sbjct: 351 QG-KIKVTVRATKQNISIIVDDTGIGISPDKLESIFDPFRQADDSIERKYGGTGLGLAIV 409

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +    L  G++SI+S++   T++   +P K
Sbjct: 410 KKLTTLMSGYISINSTEGEGTSVMISLPLK 439


>gi|3243089|gb|AAC23929.1| histidine kinase [Candida albicans]
          Length = 1081

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 14/263 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A        V +   + +  T   EA   A+  K+ F+ ++S+E+R+PL  IIG T L 
Sbjct: 467 DALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLS 526

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L   Q + +  +   +  LL +++DILD++ ++A  M +      L   +   
Sbjct: 527 LDTE---LTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 583

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +++A K  E N+ +    D     + + D  RL Q+   +  NA+ F+ +G  V +   
Sbjct: 584 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEG-KVSVSVK 642

Query: 714 RDNGDFI-------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           + +   +         V + G  I +D    +F+ F        R   G GLGLSI +  
Sbjct: 643 KSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 702

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           I+L GG + ++S     +     
Sbjct: 703 IHLMGGEIWVTSEYGSGSNFYFT 725


>gi|23428538|gb|AAL11449.1| putative global response regulation sensor kinase GrrS [Serratia
           plymuthica]
          Length = 908

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+  +S+ELR+PL  +IGFT  +LKT     ++  Q+ Y++ 
Sbjct: 277 ELDLAKKRAQEAARIKSEFLASMSHELRTPLNGVIGFTRQMLKTE----MSVTQTDYLQT 332

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL ++ND+LD + ++AG + L +    L + L+EV   +A   HE  + + + 
Sbjct: 333 IERSANNLLTIINDVLDFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLD 392

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNG 727
               +    + D  RL QI + +L NA+ F+  G+    V L+  +D+  +    + + G
Sbjct: 393 VHNDVPEQVIGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGQQDHQVELEVQIHDTG 452

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E     +F  F        RR  G GLGL I +  +   GG +   S     +T  
Sbjct: 453 IGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFW 512

Query: 786 CRI 788
             I
Sbjct: 513 FHI 515


>gi|315658231|ref|ZP_07911103.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590]
 gi|315496560|gb|EFU84883.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590]
          Length = 588

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 156/391 (39%), Gaps = 35/391 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + T +  G       +++ ++       +T   ++   I+ ++EGV        I LSN 
Sbjct: 229 VTTKDEIGELSRALNDMSFEIQENVQALSTSKNIRDSLINSMAEGVVGINDHRDIILSNK 288

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
               +  T                      N+S    +   I  +F  E    +      
Sbjct: 289 MADEILPT---------------------INQSMYERIEDQIEDTFTSEGTEFREYDFDT 327

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              V   S IP          V +   +  E  L          D++K  F+  VS+ELR
Sbjct: 328 RYYVFIMSYIPQIQEDGRSGIVVIIRDMTNEHNL----------DQMKKDFIAIVSHELR 377

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P++ + G+T+ +    + +   +  + +  +   +  L  LVN++L++A +DA  + +N
Sbjct: 378 TPISLLQGYTESIVDGIV-TEPEEIKESLSIVLDETNRLNRLVNELLNVARMDAEGLSVN 436

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +  LLN+++     +  + ++ + +  +     +  D  R+ Q+ + ++ NA  +
Sbjct: 437 KEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPETNDALWYYDSDRIDQVLTNLIDNATRY 496

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +  G T+ + +   +   +  + + GS I  +    VF+RF        R   G GLGL 
Sbjct: 497 TQPGDTISITSEDTDKYNVLHINDTGSGIAPEHLNLVFDRFYKVEASRTRGKQGTGLGLF 556

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           I +  I  HGG +++SS     TT   ++P 
Sbjct: 557 ICKMIIEEHGGTITVSSVVGEGTTFTIKLPK 587


>gi|302846523|ref|XP_002954798.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
 gi|300259981|gb|EFJ44204.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
          Length = 1238

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K  F+  +S+ELR+PL  IIG +D L     G +N +  + +  I  S   LLNL+ND
Sbjct: 330 EQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLIND 389

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD A++  G + + +  + L  ++++V         +  +++       +   + D  R
Sbjct: 390 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLA-KRGVKLVNDLRENVPFVLGDTGR 448

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+F  ++ N+  F+  G  + + A+  + +   +V + G  IPED    +F  F    
Sbjct: 449 IIQVFHNLIGNSCKFTHNG-FISIAASVKDDEVEVAVSDTGIGIPEDKFDQIFLAFEQVD 507

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                +  G GLGL++V+  +  HGG +S+ S +   TT    +
Sbjct: 508 MSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSKEGQGTTFFFTL 551


>gi|13472176|ref|NP_103743.1| sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14022921|dbj|BAB49529.1| probable sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1622

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 15/324 (4%)

Query: 480  IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            + N  A   R         L  + + +   E    Q  L   ++ + E +   L   +  
Sbjct: 858  VLNTIAATMRTEGLLKQSQLLTSELQARQTELTKKQEELHATNEELQEKA--QLLENEKK 915

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                   +   A RAL EK E L    + K+ F+ ++S+ELR+PL +++  ++LL  ++ 
Sbjct: 916  QVENKNLEIEMARRALEEKAEQLALTSKYKSEFLANMSHELRTPLNSLLILSNLLAANQQ 975

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            G+LN KQ ++   I+++ T LL+L+NDILDL+ +++G + ++ + + +  L   + ++  
Sbjct: 976  GNLNEKQVEFARTINSAGTDLLSLINDILDLSKIESGTVSIDINDMPVAHLRQHMDRTFR 1035

Query: 660  TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAA 713
                +  +   +  D +L  +   D +RL QI   +LSNA  F+S G       V     
Sbjct: 1036 QLAADKGLGFTINVDPELPETVRTDEKRLQQIVLNLLSNAFKFTSAGEVRLDFRVEKTGR 1095

Query: 714  RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            R+           +V + G  IPED  K +F  F         +  G GLGLSI      
Sbjct: 1096 RNGARQPKRALAIAVTDTGIGIPEDKQKLIFEAFQQADGTTSRKYGGTGLGLSISREIAR 1155

Query: 767  LHGGHVSISSSDEGVTTINCRIPS 790
            L GG + + S+    +T    IP 
Sbjct: 1156 LLGGELRVESTPGKGSTFTLMIPL 1179


>gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
 gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
          Length = 1381

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 100/507 (19%), Positives = 192/507 (37%), Gaps = 54/507 (10%)

Query: 330 FHNRSFV-ELWEIDLAFLATNPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
           F N ++  +       +    P+N+   E+ + +        +    TW E +    + +
Sbjct: 70  FCNAAYRRDTLGRKYPWALGLPANEVWAEIWDDIGPRVDTVLRTGEATWDEGLLLFLERA 129

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL---TVQVDLETKYNTL---------V 433
              ++T+H     T          G  + M   +   T +V  E +  TL         +
Sbjct: 130 GYREETYH-----TFSYSPLRADDGSLVGMLCVVSEDTERVIGERRMATLRDLGSDPSVI 184

Query: 434 KVQGETIDHLSEGVA------------VFGPDG-RIKLS------NPAFRSLWKTEENRL 474
           + + ET+  +S  +A            ++  DG R+  +      +PA  +     +   
Sbjct: 185 RTEQETLAFVSRQLARNPQDLPFTLTYLYDDDGARLVEATGLAAGHPAAPATLSLGDPAA 244

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE------RKSLQGTLELLSDSVLEY 528
                      +     +     DL A +  +   E      R+        L   +  Y
Sbjct: 245 PWPAGALTEGESVRVALDGPAFTDLPAGVWPAAPAEALLVPLRQQGGAPYGFLVAGLNRY 304

Query: 529 SIIPLPNAQTMLTFVNV----TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             +       +            S R+ +A   + E L + D  K +F  ++S+E R+PL
Sbjct: 305 RALDDGYRGFVELTAGHLATGIASARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTPL 364

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I+G  D L+  +L   + +    ++ I  +   L NLVN +LD + ++AG M+  Y  
Sbjct: 365 TLIMGPLDELR-GRLQGADEQVRTELDVIRRNGLRLGNLVNSLLDFSRIEAGRMQARYEP 423

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L  +  ++     + +    +  +V           DR    ++   +LSNA+ F+  
Sbjct: 424 VDLAAVTADLASVFRSAIERAGLSFEVDCPPLPEPVHLDRGMWEKVVLNLLSNALKFTFD 483

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
           G T+ ++   D    +  + + G  +P D    +F RF    NA      G G+GL++V+
Sbjct: 484 G-TIRVELRADGDAAVLRISDTGIGVPADEMPRLFERFHRIENARSRSDEGSGIGLALVQ 542

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             + LHGG +  SS+    TT   R+P
Sbjct: 543 ELVTLHGGDIDASSAVGRGTTFTIRLP 569


>gi|269215795|ref|ZP_06159649.1| putative sensor histidine kinase [Slackia exigua ATCC 700122]
 gi|269130745|gb|EEZ61821.1| putative sensor histidine kinase [Slackia exigua ATCC 700122]
          Length = 650

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 475 SPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +    +  I  +  +   ESD   D       SFD+  + LQ     LS+ V        
Sbjct: 326 NFEYRLPRIKKSRQKVSEESDIPADEIEDFTRSFDNMARQLQRLYCNLSEEV-------- 377

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              QT                L    + L +    KN F   VS+ELR+PLT+++ +   
Sbjct: 378 -ENQTCELQKLNEKLAHQSDELKHAYDKLSEESAYKNEFFAIVSHELRTPLTSVMAYARR 436

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK S+   +  +    V  I  S+ +LLNLVN+IL L+  +AG   L    I   +LL  
Sbjct: 437 LKNSE--GICERDLDSVIQIETSANVLLNLVNNILTLSKAEAGKNTLELGPIDFVELLKF 494

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           V++++       NI +   +D  +   +AD +++ ++   +  NA+ ++ +G +V + A 
Sbjct: 495 VEKTLRPLAANKNIELVSHADANVPIAMADWEKMRRVIDNLADNAIKYTHEGGSVDVHAW 554

Query: 714 RD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLH 768
            D    + +  V +NG  I      S+F  +            RG GLGL++V+  + LH
Sbjct: 555 LDENENEIVIDVVDNGIGIDPKDQDSIFEAYEQARRMPVSHHIRGTGLGLAVVKELVRLH 614

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
            G VS+ S+ +  +T   RIP+
Sbjct: 615 EGSVSVQSTPKQGSTFTVRIPT 636


>gi|304315711|ref|YP_003850856.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777213|gb|ADL67772.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 473

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L + D  +  FV +VS+ELRSPL+ I G+ D +    +     K   Y+E     +  + 
Sbjct: 241 LGRMDNARREFVANVSHELRSPLSTIQGYIDGVVDGTIPM--EKSKFYLEIAQKETRRMS 298

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++++LD+  +++G   LN     +N+L+      + +++++ ++ +KV  D       
Sbjct: 299 RLISELLDITKMESGAFPLNLVEFDINELIRLTIIKMESRINKKDLMVKVDFDSDKDIVE 358

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD+ ++ Q+ + ++ NA+ FS+ G  + +   +        V N G +IP D    +++R
Sbjct: 359 ADKDKIEQVLTNLIDNAIKFSNPGGYIHIVTEKSKDKLFIKVHNKGKTIPPDEIDHIWDR 418

Query: 742 FVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F           GVGLGL IV S INLH   + ++SSDE  TT    +  K+
Sbjct: 419 FYKVDKSRSGSPGVGLGLYIVRSIINLHNEDIWVTSSDEEGTTFTFTLKLKK 470


>gi|149277588|ref|ZP_01883729.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149231821|gb|EDM37199.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 1069

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 119/656 (18%), Positives = 246/656 (37%), Gaps = 54/656 (8%)

Query: 168  ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
            I  ++   +++AE       +  +   F++  D L  L W  D+ G + +AN  + ++  
Sbjct: 434  IQEINKNTNDIAEMDPDQHVMLMNERRFQLFMDELPGLCWIIDRHGILKYANKCFLESNN 493

Query: 228  TEGIVFQKAIGESRKL-------FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
                V  K+  E   +          +    +  S A  ++   +   L++     +   
Sbjct: 494  LTRAVIGKSYEEVFGVDIARIAYLSNQEVLDLNESKAYYQSRRGSSGHLQYFKTYKFPFR 553

Query: 281  RVLNSFGEAG-IAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
             V       G I+ ++++   + ++L        +   +  + +AI       +  N S 
Sbjct: 554  DVDGEDSLVGAISFNITERRKLEEELYQSEAQFQQAFEHSLIGMAIISPQGRWERVNSSL 613

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
              +   + + L    +N  + +     +        K       S YK    ++  +   
Sbjct: 614  CSILGYEASEL----TNMTIQDITHPDDLQDSMSILKDLASGKISEYK----YEKRYVHK 665

Query: 396  NGQTLHVIVTS---NPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +G  + V++ +   N   G     +   E++T +  +E       K      +++ +   
Sbjct: 666  DGHMIWVVIAATMLNDSAGEPLHYVSQIEDITNRKHIENDLVLSEKKYRTIFENVQDVFY 725

Query: 449  VFGPDGRIKLSNPAFRSLWKTE------ENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
               P G I   +P+              ++ +    + ++         ++    D    
Sbjct: 726  QTDPQGIITEISPSIEQYSGYPRLEIVGQSVVHFYYYPQDRERIMQELISKGSVIDFEVR 785

Query: 503  IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            + T  ++ R +      L+ D V++          T  +  +VT     E AL   N  L
Sbjct: 786  LKTKNEELRYASVNARTLIEDGVVK---------GTEGSMRDVTVRKFQENALKALNTEL 836

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYISASSTI 619
              +++ K+  +  + ++LR+P   I G   LL  + +   +        Y+  + A    
Sbjct: 837  TASNDQKSKLLSIIGHDLRNP---ISGSLQLLNLTLMDFESSSAEDVQNYLSMMRAELFN 893

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
              NL+ D+L  A      +  N   I  L  L+++  Q+I     +  I +++  +  L 
Sbjct: 894  ANNLLEDLLAWAKSQFESVSFNPVQIQDLKGLIDKCMQTILPMASKKEIDMQLYVEDGL- 952

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               AD   L  I   +LSNA+ F+  G  V+L A  D     FSVK+NG  IP    + +
Sbjct: 953  QVKADTAMLETIIRNLLSNAVKFTQSGGKVLLGAFEDEIGVTFSVKDNGVGIPAIKQEEL 1012

Query: 739  FNR---FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            FN+   + +    G+ +G GLGLS+   F+  HGG + + S +    T    +P++
Sbjct: 1013 FNKNSNYTTFGTSGE-KGTGLGLSLCFDFVVKHGGMMWVESDEGLGATFYFTLPTQ 1067



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 66/460 (14%), Positives = 152/460 (33%), Gaps = 59/460 (12%)

Query: 197 VLFDSLDFLVWHRDQAG-DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK-KRMIS 254
            LF++    +W  D      L  N++       E   F +      K  ++     RM+ 
Sbjct: 8   NLFENSPLPMWVFDVETFAFLDVNLAAIALYGYEREEFLQMTLLDIKAVEDADSLSRMLG 67

Query: 255 SSALEKNFCETVSTLEHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
                  + + +S        +  +      V          +  D+++++   + L  +
Sbjct: 68  DQPCGAGYFKGLSVHIKKGGYNINVSVESNAVDFDGRAARVVLITDITEKLKAEEALQFS 127

Query: 309 YEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
            +    L       IAI D N   ++ + +   +  I           +  +    +   
Sbjct: 128 EKRFKALVQEGADLIAIIDLNLVYKYVSPTSTTVLGIPP---------ENFIGRTAADFI 178

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTIWMFEN 418
            PE L   +    + + +         +    G+   +   +         GG +    +
Sbjct: 179 HPEDLPEVSRLAGMLATHHQVHIGPYRFMDNKGEWRWIETRATNLTEDEHIGGIVCNSTD 238

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DG-RIKLSNPAFRSLWKTEENRL 474
           +T +++ E      +K+    + + ++GV +      DG +I   N A   +       L
Sbjct: 239 ITERMEEEH----WLKLLESVVINTTDGVMITDANALDGPKIIYVNDALVQMSGFSRTEL 294

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS------VLEY 528
                   + ++ S ++   D  +    I  +     K +  TLEL++ +       +  
Sbjct: 295 --------VGSSPSIFHAHDDAQEGLKRIENAVH---KKIPCTLELVNYTKSGVSYAISM 343

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV-SYELRSPLTNI 587
           ++ P+ +    +T          E       E   +   +K   +  + S+ +R PL  I
Sbjct: 344 NVCPVTDTNGEVTHWVSIQRDITENR-DYIQEIEDQNKRLKT--IGWMQSHLVRDPLVRI 400

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           I  TD+L+    G       + + Y+  S+  L  ++ +I
Sbjct: 401 ISLTDILQNGCTG---EDHGKLLSYLKKSTAELDAIIQEI 437



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 88/308 (28%), Gaps = 40/308 (12%)

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
           A+  +GR +       I         L  +  + K L    +    + D           
Sbjct: 98  AVDFDGRAARVVLITDITEKLKAEEALQFSEKRFKALVQEGADLIAIID----------- 146

Query: 212 AGDILWANISYKKNTETE----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
                  N+ YK  + T     GI  +  IG +   F        +S  A        V 
Sbjct: 147 ------LNLVYKYVSPTSTTVLGIPPENFIGRTAADFIHPEDLPEVSRLAGMLATHHQVH 200

Query: 268 T------LEHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLT 316
                     G  +  +     +    +  G    + D+++ +     L     ++ N T
Sbjct: 201 IGPYRFMDNKGEWRWIETRATNLTEDEHIGGIVCNSTDITERMEEEHWLKLLESVVINTT 260

Query: 317 VAIAIFDQNR----YLQFHNRSFVELWEIDLAFL-ATNPSNDELLEFLRSANKLPEQLNW 371
             + I D N      + + N + V++       L  ++PS     +  +   K  E    
Sbjct: 261 DGVMITDANALDGPKIIYVNDALVQMSGFSRTELVGSSPSIFHAHDDAQEGLKRIENA-- 318

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
              K+   ++   + T     +  +     V  T+      + +  ++T   D   +   
Sbjct: 319 -VHKKIPCTLELVNYTKSGVSYAISMNVCPVTDTNGEVTHWVSIQRDITENRDYIQEIED 377

Query: 432 LVKVQGET 439
             K     
Sbjct: 378 QNKRLKTI 385


>gi|3850150|emb|CAA21950.1| histidine kinase [Candida albicans]
 gi|238883421|gb|EEQ47059.1| hypothetical protein CAWG_05614 [Candida albicans WO-1]
          Length = 1081

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 14/263 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A        V +   + +  T   EA   A+  K+ F+ ++S+E+R+PL  IIG T L 
Sbjct: 467 DALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLS 526

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L   Q + +  +   +  LL +++DILD++ ++A  M +      L   +   
Sbjct: 527 LDTE---LTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 583

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +++A K  E N+ +    D     + + D  RL Q+   +  NA+ F+ +G  V +   
Sbjct: 584 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEG-KVSVSVK 642

Query: 714 RDNGDFI-------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           + +   +         V + G  I +D    +F+ F        R   G GLGLSI +  
Sbjct: 643 KSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 702

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           I+L GG + ++S     +     
Sbjct: 703 IHLMGGEIWVTSEYGSGSNFYFT 725


>gi|298206889|ref|YP_003715068.1| two-component system sensor histidine kinase [Croceibacter
           atlanticus HTCC2559]
 gi|83849523|gb|EAP87391.1| two-component system sensor histidine kinase [Croceibacter
           atlanticus HTCC2559]
          Length = 813

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 149/318 (46%), Gaps = 21/318 (6%)

Query: 492 NESDGWDLFAAIITSFDDE---RKSLQGTLELLS----DSVLEYSIIPLPNAQTMLTFVN 544
           N+ +       IIT+FD E   +  +Q T +  S     ++L+YS +       + T++ 
Sbjct: 234 NDLNISAQLRQIITAFDAEIARKNQIQATKKSASVDRTSTILKYSGVLGIFIILLFTYII 293

Query: 545 VTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           + D  +AER   +L +  +   +  + +   +  VS++L++PL  I+G++DL++ +    
Sbjct: 294 LNDFFKAERFKISLKKSKDYSEELLKSREQLISTVSHDLKTPLNTIVGYSDLIENT---D 350

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L  KQ  YV  I+ SS  +  LV+D+LD + ++AG + +      L  ++ +  ++    
Sbjct: 351 LTEKQLYYVNQITNSSLYVTKLVDDLLDFSKLEAGKLHIETIPFSLESIIQQTVETSKDV 410

Query: 662 MHENNIRIKVISDGKL--GSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARD 715
             + N+ I +  D  +    F +D  R+ QI S ++ NA  F+ +GS      IL+    
Sbjct: 411 HQQKNVAIHLYVDQAISNQVFESDPLRIRQILSNLIGNAFKFTEEGSVTVYAKILEQKAQ 470

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVS 773
             +    V + G  I ++  + +F  F         +  G GLGL+I     NL  G ++
Sbjct: 471 EFEIEIKVVDTGIGISKEKQELIFKEFQQAEADTIKRFGGNGLGLAISRKLTNLLHGTLT 530

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S+    +T    +P K
Sbjct: 531 VDSTPNQGSTFTLVLPLK 548


>gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp.
           Marseille]
 gi|151282535|gb|ABR90945.1| sensor histidine kinase/response regulator [Janthinobacterium sp.
           Marseille]
          Length = 1096

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 128/261 (49%), Gaps = 6/261 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q  L    +    R + AL    EA   A++ K  +V  +S+ELRSPL +I+G++ +L
Sbjct: 613 NRQNELLTQEIDAHQRTDAALQSAKEAAESANQAKTRYVAGISHELRSPLNSILGYSQIL 672

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L++     ++ I  S   LL LV+++LDLA ++A  M+L  + I+    ++++
Sbjct: 673 LKNE--QLDAAPRTAIQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAAFIDDL 730

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +  +     +R++    G L  +V AD +RL QI   +L+NA+ F+  GS V L   
Sbjct: 731 LSMVRPQAEAKGLRLQYTHGGDLPHYVLADGKRLRQILINLLTNALRFTDTGS-VTLHVE 789

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F V + G  I     + +F  F   A    R   G GLGL+I E  I +  G 
Sbjct: 790 CTGVSMRFDVIDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILMMNGS 849

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           +++ S+    +T   R+P  E
Sbjct: 850 LNLISTQGQGSTFVVRLPLME 870


>gi|110803159|ref|YP_698812.1| sensor histidine kinase/response regulator [Clostridium perfringens
            SM101]
 gi|110683660|gb|ABG87030.1| sensor histidine kinase/response regulator [Clostridium perfringens
            SM101]
          Length = 1086

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 117/239 (48%), Gaps = 5/239 (2%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--LKTSKLGSLNSKQSQYVEYISAS 616
             + + K  + KN +  ++S+ELR+PL  I+    L  LK  K      +   Y   +  +
Sbjct: 844  KDEMIKRQKFKNDYFVNLSHELRTPLNVILATVQLIKLKNKKECLGKYQVEDYTNTLRNN 903

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
            +  LL ++NDI+D + +++G  KLN     +  L+ +   S+   + ENN+ I +  + +
Sbjct: 904  ADHLLKIINDIIDSSKIESGAYKLNIEKHDIVSLVEDTALSLKAYIEENNLDIIIDPEIE 963

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMC 735
                  D+  + +    +LSNA+ ++    T+ +     +N     ++K+ G  I ++  
Sbjct: 964  ELDVECDKNEIERCVINLLSNAIKYTHGHGTIEVFIRECENETVEIAIKDTGVGISKEQQ 1023

Query: 736  KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            K +F+RFV      + Q R  G+GL++V+S I LH G + + S     +T    +P ++
Sbjct: 1024 KIIFDRFVQADSIAKKQYRSSGIGLTLVKSIIELHHGKIKVESELNKGSTFIITLPIRQ 1082


>gi|34497406|ref|NP_901621.1| two-component sensor [Chromobacterium violaceum ATCC 12472]
 gi|34330344|gb|AAQ59623.2| probable two-component sensor [Chromobacterium violaceum ATCC
           12472]
          Length = 562

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 123/256 (48%), Gaps = 10/256 (3%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +  +++T+   AE  L    +    A+  K++F+  +S+E+R+P+  ++G  +LL  ++ 
Sbjct: 1   MACLDITERKMAEFELRMARDQANAANRAKSAFLATMSHEIRTPMNGVLGMLELLAMTR- 59

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+++QS  V  I  S+  LL L++DILD + ++A  +++  +   +   ++ V+    
Sbjct: 60  --LDAEQSDTVATIQDSANTLLRLIDDILDFSKIEADRLEIVPTRTAIRPFMDSVRSLYH 117

Query: 660 TKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG 717
               +  + + +  D KL  + V D  R+ QI    +SNA+ F++ G   + +K      
Sbjct: 118 ENASKKGLELTLTLDDKLAPTLVIDPLRVRQILQNFISNAIKFTASGKVDIRVKVMDTVA 177

Query: 718 DFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           ++    F V++ G  + ++    +F  F        RR  G GLGL+I      L GGHV
Sbjct: 178 NYQVLSFEVEDTGIGMSQEQLSKLFQPFTQADSETTRRFGGTGLGLAICRRLAGLMGGHV 237

Query: 773 SISSSDEGVTTINCRI 788
            + S     +     +
Sbjct: 238 EMESEQGKGSCARLLL 253


>gi|77022892|ref|XP_888890.1| hypothetical protein CaO19_5181 [Candida albicans SC5314]
 gi|76573703|dbj|BAE44787.1| hypothetical protein [Candida albicans]
          Length = 1081

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 14/263 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A        V +   + +  T   EA   A+  K+ F+ ++S+E+R+PL  IIG T L 
Sbjct: 467 DALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLS 526

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L   Q + +  +   +  LL +++DILD++ ++A  M +      L   +   
Sbjct: 527 LDTE---LTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 583

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +++A K  E N+ +    D     + + D  RL Q+   +  NA+ F+ +G  V +   
Sbjct: 584 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEG-KVSVSVK 642

Query: 714 RDNGDFI-------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           + +   +         V + G  I +D    +F+ F        R   G GLGLSI +  
Sbjct: 643 KSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 702

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           I+L GG + ++S     +     
Sbjct: 703 IHLMGGEIWVTSEYGSGSNFYFT 725


>gi|2911164|dbj|BAA24952.1| CaNIK1 [Candida albicans]
          Length = 1081

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 14/263 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A        V +   + +  T   EA   A+  K+ F+ ++S+E+R+PL  IIG T L 
Sbjct: 467 DALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLS 526

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L   Q + +  +   +  LL +++DILD++ ++A  M +      L   +   
Sbjct: 527 LDTE---LTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 583

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +++A K  E N+ +    D     + + D  RL Q+   +  NA+ F+ +G  V +   
Sbjct: 584 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEG-KVSVSVK 642

Query: 714 RDNGDFI-------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           + +   +         V + G  I +D    +F+ F        R   G GLGLSI +  
Sbjct: 643 KSDKMVLDSKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQL 702

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
           I+L GG + ++S     +     
Sbjct: 703 IHLMGGEIWVTSEYGSGSNFYFT 725


>gi|281205977|gb|EFA80166.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1441

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 159/405 (39%), Gaps = 44/405 (10%)

Query: 415  MFENLTVQVDLE---TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            M   ++ +   E    K    + +    ++     + +    G I     A   +   + 
Sbjct: 728  MLAVISNRAASELEGRKIREELILSEIILNQFPSCMFLVNNQGVIVREFGAINQIMGFDS 787

Query: 472  NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL--EYS 529
              L     +            + + +    ++I S   +    + TL  + D     E S
Sbjct: 788  TCLGKNISMFE--------KGKEEIYQALHSLIKSGTKDTVVKEITLTRMDDKEFFTEVS 839

Query: 530  IIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKAD--------------EIKN 570
            +  + +        M+   ++T+S + + +L E N  L   +              ++K+
Sbjct: 840  LREIFDQNGMPLGIMVVIRDITESKQIQHSLEEVNHQLSCKNKELVEARDRALKAIQMKS 899

Query: 571  SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
             F+  +S+E+R+P+  +IG  ++L TSK   LN +Q +  + I  S  +LL++ +DILD 
Sbjct: 900  KFLATISHEIRTPMNGVIGMAEMLLTSK---LNPEQYEIADTIYKSGELLLSITSDILDF 956

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689
            + ++A  ++L          +  V  +++  + +  I I ++ +  + +  + D  RL Q
Sbjct: 957  SKIEASKLELEMIEFDFIGCIEGVFNTLSISLDKK-IEIILLFEKDVPTKLIGDPNRLRQ 1015

Query: 690  IFSKILSNAMDFSSKG---STVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            I   I  NA+ F+ KG     + + +          S+++ G  I  +    +F  F   
Sbjct: 1016 IILNIGHNAIKFTDKGHVFGHISVVSRERGTVQICVSIQDTGIGIEPEKRDMLFEPFSQL 1075

Query: 746  AHRGQR--RGVGLGLSIVESFINLHGGHVSIS-SSDEGVTTINCR 787
                 R   G GLGL+I      L  G VS+  S     +  + +
Sbjct: 1076 DSSTTRKYGGSGLGLAICSPLAKLMDGDVSLDWSQPGKGSIFSIK 1120


>gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1130

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 142/337 (42%), Gaps = 10/337 (2%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF----AAIITSFDDERKSLQG 516
            AF  + + E+   +       +    + + + S    L     A+   S  D  + ++G
Sbjct: 344 EAFARIHQLEKIFFAAMLTAIVLVILAALWLSNSITAPLLRLTWASERVSAGDLEQKIEG 403

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT---EKNEALRKADEIKNSFV 573
           T        L  S   +  +      +    +   E+ +    ++N+ L+ AD++K+ F+
Sbjct: 404 TERKDEIGRLATSFARMQCSIREKMSLISKQNQELEKNIHVIKQQNDDLQTADKLKDEFL 463

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
              S+ELR+PL  +IG  + L     G +   Q + +E +  S   L NLV+D+LD   +
Sbjct: 464 ATTSHELRTPLHGMIGIAESLLAGANGPMQGAQRRQLEMLINSGQRLTNLVDDLLDYHKM 523

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
             G + ++   + L   +  V +     +    +RI       L    AD QRL Q+   
Sbjct: 524 RYGDLDIDKHAVDLASAVRLVLELSGHLLGTKPVRIINQIPADLPLVQADEQRLEQVLYN 583

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--R 751
           ++ NA+ ++S+G  ++L A          V + G  IP +  + +F   V         R
Sbjct: 584 LVGNAIKYTSEG-KIVLSATVLENQVRIQVVDTGQGIPAEQLEHIFEPLVQANTNHANYR 642

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +G GLGL+I    + L GG + +SS     TT +  +
Sbjct: 643 QGAGLGLTISRQLLELMGGRLYVSSQPMVGTTFSFTL 679


>gi|1262210|gb|AAB03699.1| Nik-1 [Neurospora crassa]
          Length = 1281

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 158/380 (41%), Gaps = 24/380 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ ++++E K   L  +  ETI+++ + +++F  + +    +     +   + +     
Sbjct: 569 DMSRKIEVEAKGEIL--ILKETINNMVDRLSIFCNEVQRVAKDVGVDGIMGGQADVAGLK 626

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + I    +   N     +L A +    D    +  G    L    +E       +  
Sbjct: 627 GRWKEITTDVNTMAN-----NLTAQVRAFGDITNAATDGDFTKL----VEVEASGEMDEL 677

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  V +   + +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +
Sbjct: 678 KKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT 737

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q + +  +++ +  LL +++DILDL+ ++A  M +      L   +    ++
Sbjct: 738 ---DLTQYQREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKT 794

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------- 709
           +A K  E  + +    D  +    V D  RL QI   ++ NA+ F+  G   +       
Sbjct: 795 LAVKETEKFLDLTYRVDHSVPDHVVGDSFRLRQIILNLVGNAIKFTEHGEVSLTIQKASS 854

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           ++ + +     F V + G  IP D    +F+ F        R   G GLGLSI +  +NL
Sbjct: 855 VQCSTEEYAIEFVVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNL 914

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG V + S     +     
Sbjct: 915 MGGDVWVKSEYGKGSKFFFT 934


>gi|150017332|ref|YP_001309586.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903797|gb|ABR34630.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 344

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 133/278 (47%), Gaps = 4/278 (1%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           K +   L   S++++E              +  V +  +  +      + L   +  ++ 
Sbjct: 70  KKILAPLVKFSEAIMEVGKGNFNIKLDEDKYYYVEELKKMSQNFNIMVDELNNIETFRSD 129

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ +VS+E ++PL +I G+T LL+ + L     ++S+Y + I  ++  L +LV  IL ++
Sbjct: 130 FIANVSHEFKTPLASIEGYTTLLQDNNLSK--EEKSKYTDKILNNTKRLSSLVGSILQIS 187

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++   +    S   L++ L +    + +K    NI + +  D    +F  + + L+Q++
Sbjct: 188 RLENQDIIAERSRFKLDEQLRQTLLLLESKWSNKNIDLDIDLDS--ITFHGNEELLMQVW 245

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             ILSNA+ F+ +  T+     +D      S+ +NG  + ED  K +F++F         
Sbjct: 246 INILSNAIKFTPEDGTIRCTLKKDKNWITTSISDNGIGMNEDTQKHIFDKFYQGDKSHSS 305

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLGL++V+  I+L GG + + S  +  +T   ++P
Sbjct: 306 EGNGLGLALVKRIIDLCGGKIEVYSECKKGSTFVIKLP 343


>gi|317484882|ref|ZP_07943772.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923864|gb|EFV45060.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 603

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 192/488 (39%), Gaps = 46/488 (9%)

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK-----------LPEQLNWKT 373
           +  L +    F  + ++   F+        + E +  + +           +     +  
Sbjct: 132 DTDLVYAAIPFAAVGKLPDGFIRVAVPLKHVEERIAQSERQWLAIVGLATLIALLFAYGL 191

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYN 430
                 S+ +     +     P+GQ     +   P            ++  + +   +  
Sbjct: 192 STHLERSLKEMIRVVESIATDPSGQGNRRRLHILPGREFRRLAHAVNDMADRTEEHLRTI 251

Query: 431 TLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
              K Q +TI D ++EGV V G  GRI+L NPA   L+  +         +  I A    
Sbjct: 252 AENKAQLKTILDVMNEGVLVIGEKGRIRLVNPALVRLFP-QAKDAEGKFPVEVIPA---- 306

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDS 548
               ++       ++++  D+ + +   +E   D +L    I P      +L      D 
Sbjct: 307 ----AEIQQALDELLSAPQDKPRLITLEVEPRPDMILSVQFIRPREAIHDVLAVAVFHDI 362

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
               R +            ++  FV +VS+ELR+PLT I G+ + L+ S      S  ++
Sbjct: 363 SEMARLM-----------RVRKEFVANVSHELRTPLTAIAGYAETLRDSAAED-PSICAK 410

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + E I  ++  +  +V D+L L+ +++G + +   T+    +L++V  +   +   +N+ 
Sbjct: 411 FAETILRNAQHMGTMVEDLLKLSRIESGAVPMEMETVKAASILSDVTTACQPQTAAHNLT 470

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
           ++   D  L +  AD   + Q+F  ++ NA  ++ +GST+ +   +        + +F +
Sbjct: 471 LETDIDPAL-TVRADPHFIGQVFRNLIENACRYAPEGSTIKVSGGKRLDHNGLPEALFMI 529

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            ++G  IP+     VF RF     HR      GLGL+I +  +  HGG +       G  
Sbjct: 530 CDDGPGIPQADIARVFERFYRVEKHRSSPASTGLGLAICKHIVERHGGRIWAEPGPGG-- 587

Query: 783 TINCRIPS 790
            +   +P 
Sbjct: 588 CLQFTLPL 595



 Score = 37.6 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 95/328 (28%), Gaps = 26/328 (7%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN-SFGEAGIAI----DVSK 297
           LF   +   +  S        E+++T   G     ++  +    F     A+    D ++
Sbjct: 186 LFAYGLSTHLERSLKEMIRVVESIATDPSGQGNRRRLHILPGREFRRLAHAVNDMADRTE 245

Query: 298 E--ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           E   T+ +       IL  +   + +  +   ++  N + V L+    A  A      E+
Sbjct: 246 EHLRTIAENKAQLKTILDVMNEGVLVIGEKGRIRLVNPALVRLF--PQAKDAEGKFPVEV 303

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           +        L E L+    K  + ++    E   D   + + Q +      +     + +
Sbjct: 304 IPAAEIQQALDELLSAPQDKPRLITL--EVEPRPDM--ILSVQFIRPREAIH-DVLAVAV 358

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F +++    L       V      +      +A +    R   +        K  E  L 
Sbjct: 359 FHDISEMARLMRVRKEFVANVSHELRTPLTAIAGYAETLRDSAAEDP-SICAKFAETILR 417

Query: 476 PGTHIRNIAATCSRYYNESDG-----------WDLFAAIITSFDDERKSLQGTLELLSDS 524
              H+  +     +      G             + + + T+   +  +   TLE   D 
Sbjct: 418 NAQHMGTMVEDLLKLSRIESGAVPMEMETVKAASILSDVTTACQPQTAAHNLTLETDIDP 477

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
            L     P    Q     +        E
Sbjct: 478 ALTVRADPHFIGQVFRNLIENACRYAPE 505


>gi|261211475|ref|ZP_05925763.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC341]
 gi|260839430|gb|EEX66056.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC341]
          Length = 782

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 149/374 (39%), Gaps = 19/374 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +      G     N A   L    E+ L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G       S  E   +P  +     
Sbjct: 202 DVYRKEIAQSIVETDQRVFNNNTAITYEQWLEYPDG-----RKSFFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +   
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDT--- 311

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+ +Q ++++ I+ S+  L N+ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 312 PLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L S V  D  RL Q+   ++SNAM F+  G  V  + A  D   
Sbjct: 372 MAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKDGGVVMTVSAECDEQH 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            D    V++ G  IPE   + +F  +             G G+GL++    I L GG +S
Sbjct: 432 ADITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIKLMGGDIS 491

Query: 774 ISSSDEGVTTINCR 787
           ++S +   +T    
Sbjct: 492 VNSEEGFGSTFTVT 505



 Score = 42.2 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +      +L+   ++ +   D+   L+++R+  G+    N + ++ T   G  
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELT---GKR 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
             + +G +   ++++EI + ++ +     N    ++         G    +++ +V    
Sbjct: 192 ESELVGLTPWDVYRKEIAQSIVETDQRVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYS 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     + L  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|240142880|ref|YP_002967393.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
 gi|240012827|gb|ACS44052.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
          Length = 679

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 6/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +       A   K+ F+  VS+ELR+PL  IIG +DLL  ++   L++ Q++    +S
Sbjct: 171 LQKAKADAEAASLAKSRFMASVSHELRTPLNAIIGMSDLLGETR---LDADQTEMNRTVS 227

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL  +N ILD + ++ G M    +   L D + +    +  +     +  +   D
Sbjct: 228 TAGRALLAHINTILDFSRLEVGRMPAEKAPFALRDAVADAASMVVAQARSKGLAFQTEVD 287

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L       R+ L ++   + +NA+ F++ G+  +     D     F V++ G  I  +
Sbjct: 288 DDLPQGVCGGRRHLEEVLVNLAANAVKFTADGTVSVHVRRADGDMVRFEVRDTGIGIAPE 347

Query: 734 MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F            G GLGL+I    + LHGG + + S     +T    +P  
Sbjct: 348 ARGRIFEAFSQADETILDSFGGTGLGLAICRQLVTLHGGEIGVDSEIGVGSTFWFELPLP 407

Query: 792 E 792
           E
Sbjct: 408 E 408


>gi|268317058|ref|YP_003290777.1| Histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334592|gb|ACY48389.1| Histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 919

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 153/358 (42%), Gaps = 32/358 (8%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-----------FDDER 511
           FR   +  E       ++ ++     R+  +    +    ++                  
Sbjct: 543 FRLSGRPGEATWRGTAYVSDLQQLLRRFLGKKQADEALRPVLAQGGGTVTATAEVVQHAE 602

Query: 512 KSLQGTLELLSDSVLEYSII---PLPNAQTMLTFVNVT--------------DSVRAERA 554
           + L G +   S  VL  S++   PL   + M                     +  RA R 
Sbjct: 603 RLLAGAIGSASARVLIASVVKEEPLSLREVMDILDETQQVIAYSHELERKSAELERATRE 662

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   NE L++ D +K+ F+  +++ELR+PLT+I  F++++  +      +++ +++  I 
Sbjct: 663 LQAANERLKELDRLKDEFISTITHELRTPLTSIRAFSEIMHANPNLP-EAQRQEFLGIII 721

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L+N +L L  +++G ++LN   + + +++ E  ++I   +  N I + V   
Sbjct: 722 KEAERLTRLINQVLTLQKLESGTVELNLEPVRMQEVIEEAVEAIQPHVQFNGITLTVSVP 781

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                 + DR +L+Q+   +LSNA+ F + +   + ++   +       V++NG  I  +
Sbjct: 782 ETPCYVLGDRDQLVQVLLNLLSNAVKFCNPEDGRIAVRLLVEPDRVRVDVEDNGPGIAPE 841

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              ++F++F        RR  G GLGL+I +  +  H G + + S      T +  +P
Sbjct: 842 DQATIFDKFRQVHTSTGRRPPGTGLGLAIAQRIVQHHHGRIWVESEPGHGATFSFTLP 899


>gi|229184210|ref|ZP_04311419.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1]
 gi|228599325|gb|EEK56936.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1]
          Length = 444

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 206 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +   + E  
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNVEEKK 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++
Sbjct: 325 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDD 382

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 383 GIGIAKEHLPYIEQSFYQINNHTT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 440

Query: 787 RIPS 790
           ++P 
Sbjct: 441 KLPL 444


>gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea
           sp. MED297]
 gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea
           sp. MED297]
          Length = 1090

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/271 (28%), Positives = 137/271 (50%), Gaps = 4/271 (1%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             S LE S + L N +T +      D  +A+ AL  K + L      K+ F+ ++S+ELR
Sbjct: 504 QKSQLEQSNLELTN-KTDVLEQQKADLEQAKLALQAKADQLSSTSRYKSEFLANMSHELR 562

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL +++  +  L  ++ G+L+  Q + +  I      LL+L+NDILDL+ V+AG ++L 
Sbjct: 563 TPLNSLLLLSQSLMKNREGNLSESQLEDIGIIHRGGRSLLDLINDILDLSKVEAGKLRLE 622

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMD 700
           Y+ + ++ L+ E+         E ++   V     +      DRQRL QI + ++ NA+ 
Sbjct: 623 YTDVDVHQLVEEITAQFKPLADEKDLAFNVDVAMPETFRLHTDRQRLRQILNNLIGNAIK 682

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGL 758
           F+++GS  +  A   +G   F+V++ G  I +    SVF  F         Q  G GLGL
Sbjct: 683 FTAEGSVTLTIAENTDGQLAFTVEDTGIGIEQAQHDSVFEAFAQVDGTTSRQHGGTGLGL 742

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +I     +L GG + ++S  +  +  +  +P
Sbjct: 743 TISRDLASLLGGSIHLTSEADEGSRFSLVLP 773


>gi|326798534|ref|YP_004316353.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
           sp. 21]
 gi|326549298|gb|ADZ77683.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
           sp. 21]
          Length = 1349

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 169/375 (45%), Gaps = 20/375 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPD--GRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           E +   ++++   +I+ + E    F       +  +  A +S  + +E           +
Sbjct: 539 EKEVEGIIEI--ASINTIPEAAVAFANRIATNVGAAIHAIKSRIRLKELLEETQAQAEEL 596

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A  +   N +   +  A  + + ++E +  Q  L L S+  LE     L     M+   
Sbjct: 597 QAQQTELENLNVELEAQANKLQASEEELRVQQEEL-LESNQELEIKSQALEEKNQMILER 655

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+    +AE         L  + + K+ F+ ++S+ELR+PL +I+  + LL  +  G+L 
Sbjct: 656 NLEIQKKAE--------DLALSTKYKSEFLANMSHELRTPLNSILLLSRLLSENNEGNLL 707

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q +Y + I  S   LL L+++ILDL+ ++AG M L+Y  + L +++N+++        
Sbjct: 708 EDQIEYAKVIQTSGNGLLTLIDEILDLSKIEAGKMTLSYEDVSLAEMINDLQNLFGPMAV 767

Query: 664 ENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDF 719
           +  + +K   D         D  RL QI   ++SNA+ F++KGS V L         G  
Sbjct: 768 DKGLELKFDCDKTTFSKIQTDNLRLQQILRNLISNALKFTAKGS-VTLSVYPNKEKEGYL 826

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F+V++ G  IP++  + VF  F       +R   G GLGLSI +    L GG + I+S 
Sbjct: 827 NFAVRDTGIGIPKEKHQLVFEAFQQADGSTRRKFGGTGLGLSISKELAKLLGGSLYINSE 886

Query: 778 DEGVTTINCRIPSKE 792
               +     IP  +
Sbjct: 887 VTKGSEFIVSIPVAK 901


>gi|172062325|ref|YP_001809976.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171994842|gb|ACB65760.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1032

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 156/374 (41%), Gaps = 24/374 (6%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +      +    I     G+ +    DG   + N    +  +              +   
Sbjct: 391 RLIESEALNRTLIRTAPAGLVLLSFADGETIMRNDTLIAYEQDVSG--------EPLGKR 442

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-EYSIIPLPNAQTMLTFVNV 545
             R Y +          +T      +   GT+ L +  V   Y  I +     + T +++
Sbjct: 443 LWRAYRDGAPAGNARTRVTRELAVERPGHGTVYLDAHIVRTRYRGIDV----LLCTLLDI 498

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T   +AE  L E   A   A++ K++F+  +S+E+R+PL  IIG  +L++ +++      
Sbjct: 499 TTRKQAEEKLREARAAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQMAV---P 555

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + +  I +SS  LL ++ND+LDL+  ++  M L      L  ++N+V           
Sbjct: 556 LRRRLGTIMSSSDALLRVINDVLDLSKAESNQMVLESIPFDLRRVVNDVAAIFRPLADAK 615

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR---DNGDFI 720
           N+ +       L + +V D  RL Q+ S ++SNA+ F+ +G  T+ ++ A+         
Sbjct: 616 NLALTCRIAPDLANGYVGDSTRLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAGPAGRGVE 675

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V + G  IPED   ++F+ +V        +  G GLGL +    + L GG +++ S  
Sbjct: 676 IAVSDTGIGIPEDSLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRL 735

Query: 779 EGVTTINCRIPSKE 792
              T     +P  E
Sbjct: 736 GEGTIFVAALPLPE 749


>gi|121605276|ref|YP_982605.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120594245|gb|ABM37684.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1124

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 118/246 (47%), Gaps = 16/246 (6%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +   +A   K +F+  +S+E+R+PL  ++G + LL  +   +L+++Q   ++ I 
Sbjct: 454 LVRARQVAEEAVRAKAAFLATMSHEIRTPLNGVVGMSTLLAET---ALDAEQRDILQTIR 510

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL +++DILD + +++G   L    + +++++ E     A +  E  I + V   
Sbjct: 511 LSSDQLLAVISDILDFSKIESGRFDLESEPVSVHNMIEEACDIAAPRAREKGIELIVDVP 570

Query: 675 GKLGS-----FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD-----FIFSV 723
           G          + D  RL QI   +++NA+ F+  G+  V  + A    +       FSV
Sbjct: 571 GAAAGGPPPAILGDVTRLRQILINLVNNAVKFTEHGAVSVHSRLAEAPDEQGLALIEFSV 630

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP +   ++F  F  V  +   +  G GLGL+I +  + L GG +S++S     
Sbjct: 631 HDTGIGIPPERVGALFEAFMQVDASTTRKYGGTGLGLAICKRLVELMGGKISVTSKLGKG 690

Query: 782 TTINCR 787
           +  +  
Sbjct: 691 SIFSFT 696


>gi|218678232|ref|ZP_03526129.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 894]
          Length = 220

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 160/219 (73%), Positives = 186/219 (84%)

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           +PNGQTL V  T++P+GG  W+FENLT QVDLET+YNTLVKVQGETIDHLSEGVAVFGPD
Sbjct: 1   MPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFGPD 60

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           GRI+LSNPAFR+LW   E    PGTHIR +   C+  Y+  DGW  FA +ITSFDDER+S
Sbjct: 61  GRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRS 120

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            QGTLEL S  VL+Y++IPLPNAQTMLTFVN+TDSVRAERALTEKNEALRKADE+KN FV
Sbjct: 121 GQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFV 180

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           QHVSYELRSPLTNIIGFTDLL+T  +G LN +Q++Y+++
Sbjct: 181 QHVSYELRSPLTNIIGFTDLLRTQGVGPLNDRQAEYIDH 219



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 7/172 (4%)

Query: 273 NNKSYKIVRVLNSFGEAGIAID-VSKEITVNDQLTHTY----EILHNLTVAIAIFDQNRY 327
           N ++ ++    +  G A    + +++++ +  +         E + +L+  +A+F  +  
Sbjct: 3   NGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFGPDGR 62

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           ++  N +F  LW I             L E    +   P+   WKT+ E I S      +
Sbjct: 63  IRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDRPDG--WKTFAELITSFDDERRS 120

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            + T  L +G  L   V   P   T+  F N+T  V  E       +   + 
Sbjct: 121 GQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKA 172


>gi|37676294|ref|NP_936690.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200835|dbj|BAC96660.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 984

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 117/233 (50%), Gaps = 7/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A+  K++F+  +S+E+R+P+  ++G   LL  S L  L   Q +Y + I+ S   LL
Sbjct: 478 AEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL---QKRYADIINRSGKNLL 534

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ND+LD + ++AG +++  S   L+ ++ +  Q + ++  E ++      +  +  + 
Sbjct: 535 AILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSYHIESDVNHYW 594

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
             D  R+ Q+ + ++ NA+ F+ +G+  + +    +  + + F V + G  I +    ++
Sbjct: 595 RGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGIGIAQQEQATL 654

Query: 739 FNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+ F   +  +    G GLGL+I    I   GG + ++S +   +     +P 
Sbjct: 655 FDAFTQASGGQKAAGGTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWFTVPL 707


>gi|116181786|ref|XP_001220742.1| hypothetical protein CHGG_01521 [Chaetomium globosum CBS 148.51]
 gi|88185818|gb|EAQ93286.1| hypothetical protein CHGG_01521 [Chaetomium globosum CBS 148.51]
          Length = 1270

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 160/381 (41%), Gaps = 25/381 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ ++D+E K   L  +  ETI+++ + +++F  + +    +     +   + +     
Sbjct: 543 DMSRKIDVEAKGEIL--ILKETINNMVDRLSIFCNEVQRVAKDVGVDGIMGGQADVAGLK 600

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + I    +   N     +L A +    D    +  G    L    +E       +  
Sbjct: 601 GRWKEITTDVNTMAN-----NLTAQVRAFGDITNAATDGDFTKL----VEVEASGEMDEL 651

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  V +   + +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +
Sbjct: 652 KKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT 711

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q + +  +++ +  LL +++DILDL+ ++A  M +      L   +    ++
Sbjct: 712 ---DLTQYQREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKT 768

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAA 713
           +A K +E  + +    D  +    V D  RL QI   ++ NA+ F+  G    T+   +A
Sbjct: 769 LAVKANEKFLDLTYRVDSSVPDHVVGDSFRLRQIILNLVGNAIKFTEHGEVSLTIQKASA 828

Query: 714 RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
             +G        F V + G  IP D    +F+ F        R   G GLGLSI +  +N
Sbjct: 829 VQSGSMGEYAIEFIVADTGIGIPSDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVN 888

Query: 767 LHGGHVSISSSDEGVTTINCR 787
           L GG V + S     +     
Sbjct: 889 LMGGDVWVKSEYGKGSKFYFT 909


>gi|46125481|ref|XP_387294.1| hypothetical protein FG07118.1 [Gibberella zeae PH-1]
          Length = 796

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 16/247 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  
Sbjct: 201 QRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNI 257

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +  +
Sbjct: 258 VNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKTLAVKANEKFLDLTYM 317

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---------FIFS 722
            D  +    + D  RL QI   ++ NA+ F+  G  V L      G            F 
Sbjct: 318 VDSSVPDYVIGDSFRLRQIILNLVGNAIKFTEHGE-VSLTIKESMGQSHVRPGEYAVEFV 376

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG + ++S    
Sbjct: 377 VQDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGDLWVNSQHGK 436

Query: 781 VTTINCR 787
            +  +  
Sbjct: 437 GSEFHFT 443


>gi|262172595|ref|ZP_06040273.1| sensor histidine kinase [Vibrio mimicus MB-451]
 gi|261893671|gb|EEY39657.1| sensor histidine kinase [Vibrio mimicus MB-451]
          Length = 1145

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 174/422 (41%), Gaps = 38/422 (9%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKIANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++ +G  V+L   R  G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPQG-KVVLGVRRVAGQVRIDVWDNGIGIEQDK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI----PS 790
             + +F  F         +G+GLGL+I +   ++ G  +S+ S     +  +  +    PS
Sbjct: 949  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPRQGSVFSLTLERAEPS 1008

Query: 791  KE 792
            ++
Sbjct: 1009 QQ 1010



 Score = 77.7 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKIANETLEE 759


>gi|238786887|ref|ZP_04630688.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
 gi|238725255|gb|EEQ16894.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
          Length = 1054

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 160/375 (42%), Gaps = 31/375 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           + + +           I+     + +    +  +  +N         +E           
Sbjct: 346 EAQREILASEAFNRTLIETAPVALCLIDRSEATLIFANALALDWLGVDEE---------- 395

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TM 539
                +R +       LF+ +    + E+      L L    ++     P    Q    +
Sbjct: 396 -----ARPHQNDAIKTLFSQLQ---NVEQGGAIERLTLPDARIVYVVYAPTRYRQQAVIL 447

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
             F +V+     E+ LT   +A  +A++ K++F+  +S+E+R+PL   +G  +LL    L
Sbjct: 448 CAFTDVSAHAEMEKHLTWAKQAADEANDAKSTFLATMSHEIRTPLYGALGTLELLS---L 504

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN++Q QYV+ I ++S +LL +++DILD++ ++AG ++L+ S     +L+ E   + A
Sbjct: 505 TQLNNQQRQYVDRIESASQMLLQIISDILDISKIEAGQLQLDKSEFNPRELVQECTGTYA 564

Query: 660 TKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714
              H   + +  +I+       + D  R+ QI + ++SNA+ F+  G+ V+    L+ + 
Sbjct: 565 GMAHRKGLLLFSIIATDIPERVIGDPARIRQILNNLISNAIKFTEIGTVVVRLSQLERSS 624

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVS 773
            +  F+  V ++G  I +   + +F  F           G GLG+SI      L    + 
Sbjct: 625 LSAKFLLEVCDSGVGIDKAEQEKLFTPFYMIDAERNMAGGAGLGMSICARLAELMDTKIQ 684

Query: 774 ISSSDEGVTTINCRI 788
           + S  +  +  +  +
Sbjct: 685 LRSEPQIGSQFSVEL 699


>gi|325107600|ref|YP_004268668.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324967868|gb|ADY58646.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1074

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 111/735 (15%), Positives = 247/735 (33%), Gaps = 86/735 (11%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           L+ +  + L+  T  +R++G   ++             G   G     R         ++
Sbjct: 226 LRKNATVGLTNHTLLIREDGS--EVSIADSAAPIFDAAGDAQGVVLVFR---------DV 274

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI- 237
            E+      + +     + + D++   +   +    +  AN S+           +  + 
Sbjct: 275 TESRNAEIAIRDARQFAENIVDTIRQPLLVLNSDLRVRSANRSFYHAFHATPEKTEGELI 334

Query: 238 -----GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS----YKIVRVLNSFGE 288
                G+       ++   ++  +    +F       E G         ++ +  ++   
Sbjct: 335 YELGNGQWDIPLLRKLLNEILPQNTSFDDFDVDHDFPEIGRRHMKLNARRMHQEQDNIEL 394

Query: 289 AGIAI-DVSKEITVNDQLTHTYEILHNL-----TVAIAIFDQNRYLQFHNRSFVELWEID 342
             +AI D++ +               +L       AI   D +  +   N     +  + 
Sbjct: 395 ILLAIEDMTDQYEAERARRAVESRFGSLVKNIRDHAIFTIDPDGLITTWNHEAENILGMT 454

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLH 401
               A       +          PEQ         +    +      + WH   NGQ   
Sbjct: 455 EKE-AIGTHFRIIFTKQEQEQGFPEQ--------ELQFARELGRAEDERWHVRKNGQEFW 505

Query: 402 VIVTSNP---RGGTIW----MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
                 P     G ++    +  ++T +   E              D  +  +    P+ 
Sbjct: 506 AQGIVTPLRDDSGELFGYSKILRDMTDRKRAEESLQLKSAQLQMLWDAAAVLLTAETPER 565

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW--------------DLF 500
            I+      +     +   +       N+  + +    +                     
Sbjct: 566 MIQRIYERLQQHLDVDAYFMFVADEEENLTLSATDGVTDEQINLVQQTAFSQTVCARAAA 625

Query: 501 AAIITSFDDERKSLQGTLELL-SDSVLEYSIIPLPNAQTMLTFVNVTDSVR-----AERA 554
                S D  ++S +   +L+ S     YS  P+     ++  ++   S R      E +
Sbjct: 626 ERRAISIDHVQQSQEPDTKLIRSLGFRAYSSSPMLYENQLIGTLSFATSTRDAFSPEELS 685

Query: 555 LTEKNEA--------------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           L +                  LR+    K+ F+  +++ELR+PL  I    D+L  +  G
Sbjct: 686 LFQTICHYVTVAYVRLRLVQELRETHRRKDEFLAMLAHELRNPLAPIRSGLDVLSMTDSG 745

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                Q + VE + A    ++ LV+D++D++ +  G ++L  + + L  L+ +   ++  
Sbjct: 746 -----QGEVVELLQAQVNHVVRLVDDLMDVSRIMRGKVELRKAPVDLVQLIEQSLDAVRP 800

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              + N  + V    +     AD  R++Q    +L+NA  ++ +G  + L+        +
Sbjct: 801 VARQQNQELAVSLPKQPVIVHADSVRIMQALENLLNNACKYTEEGGRIELRLTIQGVLAM 860

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++NG  +  ++   VF+ F  +       + G+G+GL++V++ I+LH G V+  S  
Sbjct: 861 VEVQDNGIGMDPEILPVVFDLFTQSKRSLDRSQGGLGIGLTLVKNLIDLHDGTVTAFSEG 920

Query: 779 -EGVTTINCRIPSKE 792
               +T   R+P  E
Sbjct: 921 MGAGSTFTVRLPLAE 935



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 93/290 (32%), Gaps = 28/290 (9%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTET-EGIVFQKAIGE------SRKLFKEEIK 249
            L  S+   +   +    ++ A+ SY    +T       +   E            E++K
Sbjct: 34  DLLRSMPQALLVLNDDLRVVQASESYCDMFQTKHDETVGQMFFEMGCGQWDVPELCEKLK 93

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSY----KIVRVLNSFGEAGIAI-DVSKEITVNDQ 304
             +        +F       E G    +    ++ R   +     IA+ D + E+    +
Sbjct: 94  DLLKDGQTFH-DFRVEQEFPEIGQRVMHLQAVRVRRSGEADQLVLIAVEDRTSEVEARRE 152

Query: 305 LTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L+   E     L ++  A+ + D +  +   N    EL           P  D       
Sbjct: 153 LSADREWLRVTLQSIGDAVIVTDAHGRITLMNPVAEELLGRSRDECKNRPLVDVFQIVNE 212

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTI 413
              +  E    K  ++N         T+       +G  + +  ++ P         G +
Sbjct: 213 DTREPVENPVIKALRKNAT----VGLTNHTLLIREDGSEVSIADSAAPIFDAAGDAQGVV 268

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
            +F ++T   + E       +     +D + + + V   D R++ +N +F
Sbjct: 269 LVFRDVTESRNAEIAIRDARQFAENIVDTIRQPLLVLNSDLRVRSANRSF 318



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 71/465 (15%), Positives = 141/465 (30%), Gaps = 73/465 (15%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
           ++R+ G++  LV     D   ++E R                           ++LS   
Sbjct: 125 RVRRSGEADQLVLIAVEDRTSEVEAR---------------------------RELSADR 157

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKK-------------NTETEGIVFQKAIGE 239
              +V   S+   V   D  G I   N   ++               +   IV +     
Sbjct: 158 EWLRVTLQSIGDAVIVTDAHGRITLMNPVAEELLGRSRDECKNRPLVDVFQIVNEDTREP 217

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-GEAGIAIDVSK- 297
                 + ++K                 +     + +  I        G   +  DV++ 
Sbjct: 218 VENPVIKALRKNATVGLTNHTLLIREDGSEVSIADSAAPIFDAAGDAQGVVLVFRDVTES 277

Query: 298 ---EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA--------FL 346
              EI + D       I+  +   + + + +  ++  NRSF   +              L
Sbjct: 278 RNAEIAIRDARQFAENIVDTIRQPLLVLNSDLRVRSANRSFYHAFHATPEKTEGELIYEL 337

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLHVIVT 405
                +  LL  L +   LP+  +                      H+  N + +H    
Sbjct: 338 GNGQWDIPLLRKLLNE-ILPQNTS------FDDFDVDHDFPEIGRRHMKLNARRMHQE-- 388

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFR 464
            +     +   E++T Q + E     +    G  + ++ +  +    PDG I   N    
Sbjct: 389 QDNIELILLAIEDMTDQYEAERARRAVESRFGSLVKNIRDHAIFTIDPDGLITTWNHEAE 448

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           ++    E   + GTH R I     +     +    FA  +   +DER  ++       + 
Sbjct: 449 NILGMTEKE-AIGTHFRIIFTKQEQEQGFPEQELQFARELGRAEDERWHVRKN---GQEF 504

Query: 525 VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRK 564
             +  + PL +             ++TD  RAE +L  K+  L+ 
Sbjct: 505 WAQGIVTPLRDDSGELFGYSKILRDMTDRKRAEESLQLKSAQLQM 549



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 121/344 (35%), Gaps = 47/344 (13%)

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND---------ELLEFLR 360
           ++L ++  A+ + + +  +   + S+ ++++            +         EL E L+
Sbjct: 34  DLLRSMPQALLVLNDDLRVVQASESYCDMFQTKHDETVGQMFFEMGCGQWDVPELCEKLK 93

Query: 361 SANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
              K  +   +++  +E         E  +   HL   Q + V  +       +   E+ 
Sbjct: 94  DLLKDGQTFHDFRVEQEF-------PEIGQRVMHL---QAVRVRRSGEADQLVLIAVEDR 143

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T +V+   + +   +    T+  + + V V    GRI L NP    L     +       
Sbjct: 144 TSEVEARRELSADREWLRVTLQSIGDAVIVTDAHGRITLMNPVAEELLGRSRDECKN-RP 202

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNA-- 536
           + ++    +    E     +  A+  +      +    + E  S+  +  S  P+ +A  
Sbjct: 203 LVDVFQIVNEDTREPVENPVIKALRKNATVGLTNHTLLIREDGSEVSIADSAAPIFDAAG 262

Query: 537 ---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +L F +VT+S  AE A+ +              F +++   +R PL  +     +
Sbjct: 263 DAQGVVLVFRDVTESRNAEIAIRDAR-----------QFAENIVDTIRQPLLVLNSDLRV 311

Query: 594 LKTSK-----LGSLNSKQSQYVEYISASST----ILLNLVNDIL 628
              ++       +   K    + Y   +      +L  L+N+IL
Sbjct: 312 RSANRSFYHAFHATPEKTEGELIYELGNGQWDIPLLRKLLNEIL 355


>gi|332293016|ref|YP_004431625.1| PAS/PAC sensor signal transduction histidine kinase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332171102|gb|AEE20357.1| PAS/PAC sensor signal transduction histidine kinase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 651

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 94/518 (18%), Positives = 205/518 (39%), Gaps = 31/518 (5%)

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWE 340
                GI  D++++     +L  +   L     NL   I + D++R +   N  F + + 
Sbjct: 149 PIAAQGIVRDITQDKAAEQRLIDSENRLSALILNLESGILLEDEHRNIVITNNRFCDFFN 208

Query: 341 ID---LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPN 396
           I       +  N  +    E  +   K PE+         I ++ +  E    D   L +
Sbjct: 209 IPSSPEQLIGVNCEHAA--EDSKHLFKDPEEFV-----SRINTLTRKKEQALSDELKLVD 261

Query: 397 GQTLHVIVTSNPRGGT----IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           G+ L          G     +W + ++T++           +   + I +++ G+     
Sbjct: 262 GRILERDFIPIYEEGIYKGHLWTYRDVTLRRKFRESIEAERQKYSDIIANMNLGLIEVNL 321

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           D  + + N +F  L    E  L        +    S+     +  D  +    S++ +  
Sbjct: 322 DDEVLMINNSFELLSGYTEEELLGKKAKEILLTPASQKQLTQENNDRLSGASNSYEVQAI 381

Query: 513 SLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           +  G L+  L      Y++       ++   +++T+    E       + L K+++    
Sbjct: 382 TKSGELKHWLISGAPNYNLNG-KVIGSIGIHLDITELKSLEIQKENLLKKLEKSNDELQE 440

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           +   VS++L+SPL +I    + +K         +   ++E I  +   +  L++D+L+ +
Sbjct: 441 YAHVVSHDLKSPLRSINALVNWIKDDNEDVFTKETKSHLEMIDTTLEKMEQLISDVLEYS 500

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           +V  G        + L ++L +++  +    H     I +     L +   D+ +L Q+F
Sbjct: 501 SV--GSENAPREKVNLQEVLADIETLLHCPEH-----ITLNIHPDLPTVNGDKVKLQQLF 553

Query: 692 SKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
             ++SNA+ +   +   + +    +   + F+VK+NG  IP++    +F  F S  +   
Sbjct: 554 QNLMSNAIRYCDKEEGLIEVGYTENKTHYTFTVKDNGIGIPKEYHDKIFKIFQSLNNHKD 613

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               G+GLSIV+  ++L+ G + + S+    TT    +
Sbjct: 614 S--TGIGLSIVKKIVDLYKGSIWLESNVGEGTTFFFTL 649


>gi|1262208|gb|AAB03698.1| Nik-1 [Neurospora crassa]
          Length = 1298

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 158/380 (41%), Gaps = 24/380 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ ++++E K   L  +  ETI+++ + +++F  + +    +     +   + +     
Sbjct: 569 DMSRKIEVEAKGEIL--ILKETINNMVDRLSIFCNEVQRVAKDVGVDGIMGGQADVAGLK 626

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + I    +   N     +L A +    D    +  G    L    +E       +  
Sbjct: 627 GRWKEITTDVNTMAN-----NLTAQVRAFGDITNAATDGDFTKL----VEVEASGEMDEL 677

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  V +   + +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +
Sbjct: 678 KKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT 737

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q + +  +++ +  LL +++DILDL+ ++A  M +      L   +    ++
Sbjct: 738 ---DLTQYQREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKT 794

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI------- 709
           +A K  E  + +    D  +    V D  RL QI   ++ NA+ F+  G   +       
Sbjct: 795 LAVKETEKFLDLTYRVDHSVPDHVVGDSFRLRQIILNLVGNAIKFTEHGEVSLTIQKASS 854

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           ++ + +     F V + G  IP D    +F+ F        R   G GLGLSI +  +NL
Sbjct: 855 VQCSTEEYAIEFVVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNL 914

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG V + S     +     
Sbjct: 915 MGGDVWVKSEYGKGSKFFFT 934


>gi|327395012|dbj|BAK12434.1| sensor protein BarA BarA [Pantoea ananatis AJ13355]
          Length = 922

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 14/243 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+ ++S+ELR+PL  ++GFT  +LKT     L + Q  Y+  
Sbjct: 291 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKT----PLRTTQRDYMLT 346

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++ND+LD + ++AG + L      L   L+E    +A   HE  + + V+
Sbjct: 347 IERSANNLLSIINDVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVV 406

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNN 726
            D  +  + + D  RL QI   ++ NA+ F+ KG T+ L+  +      + +    V++ 
Sbjct: 407 CDNSVPDNVIGDALRLQQILINLMGNAIKFTEKG-TINLRVEQHTITATHVELEIQVRDT 465

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+    +F  F        RR  G GLGL I +  +    G ++  S     +T 
Sbjct: 466 GIGISEEQQAQLFQAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGSTF 525

Query: 785 NCR 787
             R
Sbjct: 526 WVR 528


>gi|291523435|emb|CBK81728.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 731

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 157/383 (40%), Gaps = 43/383 (11%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR-LSPGTHIRNIAATCS 488
                +  +  D+   GVA+ G        NP +      E N  +      R +     
Sbjct: 189 EEEADLLKKKFDNRESGVALLGKQ------NPYYLGHCPIESNNTILVCIVAREVVDNVL 242

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R Y ++        ++  F          L L +      S + L + +      N    
Sbjct: 243 RDYQKTVLCTTI--LMAGF---------ILLLFAGLFYSISRLSLADQKAEYEKRNNELH 291

Query: 549 VRAERALTEKNEALRKA--------------DEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           ++  + +   N+ L+KA              ++ K  F+ ++S+++R+P+  IIG T L+
Sbjct: 292 LQTMKEMEVVNQKLKKAKNVATEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLI 351

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +        +K  +Y + I  SS  LL ++ND+LD++ ++AG     YS   + DL+ E+
Sbjct: 352 RHDAGNK--AKVIEYADKIDISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQEL 409

Query: 655 KQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                ++++E    + +I +  +      D+  L+QIFS +LSNA+ ++ +G  +     
Sbjct: 410 NTIFHSQIYEKQQTLTIIKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVE 469

Query: 714 RDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
                      + F V +NG  +  D   ++F+ F         + +G GLG++I ++ +
Sbjct: 470 ECETKSSVYAKYRFLVSDNGMGMSADFKDTIFDAFTRAERSLTNKIQGTGLGMAITKNLV 529

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
              GG + + S     +     +
Sbjct: 530 EAMGGTIDVDSELGQGSCFEVLL 552


>gi|119898693|ref|YP_933906.1| putative sensor-regulator protein [Azoarcus sp. BH72]
 gi|119671106|emb|CAL95019.1| putative sensor-regulator protein [Azoarcus sp. BH72]
          Length = 1012

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 137/318 (43%), Gaps = 18/318 (5%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +  I+A   R    S    L   +    +DE   L   L  L D+ L+     L +   
Sbjct: 196 PVERISALLQRM---SSNAALDERLQVQGNDEIARLAHGLNTLIDT-LQARDRELND--- 248

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                      +  R L+      ++A   K+ F+  +S+E+R+P+  +IG T L   ++
Sbjct: 249 -YRQHLEELVEQRTRQLSIATAEAQQASRAKSDFLARMSHEIRTPMNAVIGLTHLALRTE 307

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q  Y+  I  SS  LL ++NDILD + ++AG ++L      L+D+++ +   +
Sbjct: 308 ---LSPQQRDYLRKIRGSSQALLGIINDILDFSKIEAGKLRLEQIPFTLHDVIDNLSNIV 364

Query: 659 ATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAA 713
             K  E  + + +  D  +      D  RL QI   + +NA+ F+ +G  V+    +   
Sbjct: 365 TVKAAEKGLDVLLAIDPAIPDRMRGDPLRLSQILINLGTNAVKFTERGEVVVDCRLIDKT 424

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
            D     FSV + G  I       +F  F        RR  G GLGL+I +  I +  G 
Sbjct: 425 EDCVRVRFSVTDTGIGISAAQRGLLFQSFHQADGSITRRFGGTGLGLAISKQLIEIMEGS 484

Query: 772 VSISSSDEGVTTINCRIP 789
           + ++S     +T +  IP
Sbjct: 485 LEVASEPGEGSTFSFVIP 502


>gi|298480193|ref|ZP_06998391.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
 gi|298273474|gb|EFI15037.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
          Length = 1365

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 148/344 (43%), Gaps = 16/344 (4%)

Query: 449  VFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            V+  +G     N     S  +   + L PG ++  + A  +         + F  II  +
Sbjct: 726  VYKLEGFETEWNYSRHVSFARASYSNLPPGEYVFKVKACNNNGKWSEATTEFFVHIIPMW 785

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +     TL +     L   +I    A+  +      + +   +        + +  +
Sbjct: 786  --YQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIERNK--------IEEISQ 835

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F  ++S+ELR+PL+ I+   + LL  S L     +Q   ++Y+  +   LL++VN 
Sbjct: 836  EKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQ 893

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD    +AG M ++ + + + +LL +          +  I   + SD +   F ADR  
Sbjct: 894  LLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISFHIKSDLEGRLFPADRTY 953

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +  I   +LSNA  F+  G ++ L    +   + F+V+++G  +  +    +F RF    
Sbjct: 954  VETILMNLLSNAFKFTPDGGSISLSLWTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQVD 1013

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              GQR+G G+GLS+V+  +  H G + ++S     T     +P+
Sbjct: 1014 --GQRKGTGIGLSLVKMLVEKHHGTIMVASEPAQYTEFKVTLPA 1055


>gi|289667389|ref|ZP_06488464.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            campestris pv. musacearum NCPPB4381]
          Length = 1132

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 13/253 (5%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIF 721
            +      D  L      D  R+ QI   +L NA+ F+ +GS V L+              
Sbjct: 906  LAFHCALDDALPPALHGDASRVQQILLNLLFNAIKFTERGS-VHLRVAALPEHTQQGIRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  +  +    +F RF          +  G GLGL+I        GG V++ S  
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVISEL 1024

Query: 779  EGVTTINCRIPSK 791
                     +P +
Sbjct: 1025 GQGACFVVELPLR 1037


>gi|255528504|ref|ZP_05395290.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255507808|gb|EET84262.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 392

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 145/311 (46%), Gaps = 20/311 (6%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
           S   N+++  +++   +    +ER +  +Q    LL+++ + +          +    + 
Sbjct: 58  SEILNKAEELEIYKNHLEELIEERTADLVQANANLLAETHIRHKA-------ELEAIQSN 110

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL----KTSKLGS 601
                 +R L +      + ++++  F  ++S+ELR+PL  I     +L    K   L +
Sbjct: 111 IKYEEKKRLLNK----AVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGLDN 166

Query: 602 LNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            N  K  +Y+  I  +S  LL L+N+++D+  +DAG  ++  S   +  +  ++  S+  
Sbjct: 167 DNQFKTDKYLHTIKQNSYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSVVE 226

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +   NIR+   ++ +      D  ++ +I   +LSNA+ F+ K  T+ +         I
Sbjct: 227 YVENKNIRLIFDTEVEEKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNIYDSTDKVI 286

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
            S+K+ G  I + M K +F++FV       RR  G G+GLS+V+S + +H G +S+ S  
Sbjct: 287 ISIKDTGIGIDKSMQKLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVSEL 346

Query: 779 EGVTTINCRIP 789
              +     +P
Sbjct: 347 GEGSEFIIELP 357


>gi|237719085|ref|ZP_04549566.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451464|gb|EEO57255.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1360

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 148/344 (43%), Gaps = 16/344 (4%)

Query: 449  VFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            V+  +G     N     S  +   + L PG ++  + A  +         + F  II  +
Sbjct: 721  VYKLEGFETEWNYSRHVSFARASYSNLPPGEYVFKVKACNNNGKWSEATTEFFVHIIPMW 780

Query: 508  DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +     TL +     L   +I    A+  +      + +   +        + +  +
Sbjct: 781  --YQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIERNK--------IEEISQ 830

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F  ++S+ELR+PL+ I+   + LL  S L     +Q   ++Y+  +   LL++VN 
Sbjct: 831  EKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQ 888

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD    +AG M ++ + + + +LL +          +  I   + SD +   F ADR  
Sbjct: 889  LLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISFHIKSDLEGRLFPADRTY 948

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +  I   +LSNA  F+  G ++ L    +   + F+V+++G  +  +    +F RF    
Sbjct: 949  VETILMNLLSNAFKFTPDGGSISLSLWTEGDTYGFTVRDSGIGMSPEQLTHIFERFYQVD 1008

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              GQR+G G+GLS+V+  +  H G + ++S     T     +P+
Sbjct: 1009 --GQRKGTGIGLSLVKMLVEKHHGTIMVASEPAQYTEFKVTLPA 1050


>gi|228903186|ref|ZP_04067320.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL
           4222]
 gi|228856468|gb|EEN00994.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL
           4222]
          Length = 484

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ + P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQM-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + E  I I +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHSSPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|229180990|ref|ZP_04308325.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W]
 gi|228602547|gb|EEK60033.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W]
          Length = 484

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 129/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PITSQDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I +++          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVRLQLHASPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|184157755|ref|YP_001846094.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|332876441|ref|ZP_08444208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
 gi|183209349|gb|ACC56747.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|323517647|gb|ADX92028.1| Signal transduction histidine kinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735299|gb|EGJ66359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Acinetobacter baumannii 6014059]
          Length = 1154

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 129/245 (52%), Gaps = 8/245 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A++ K+ +V  +S+ELR+PL +I+G++ LL+  K   L+ +    +  
Sbjct: 668 KDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQ--KQEQLSEQGKMALGV 725

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q    +  + N++    
Sbjct: 726 ISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFVYE 785

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               L  +V  D++RL Q+   +L NA+ F++ G T+ LK         F +++ G  I 
Sbjct: 786 IGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYRFQTAYFEIRDTGCGIA 844

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR-- 787
           E   + +FN F   ++  Q    G+GLGL IV+  ++L GG +S++S     +    +  
Sbjct: 845 EADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLSVTSQLNQGSQFKIKFY 904

Query: 788 IPSKE 792
           +PSKE
Sbjct: 905 LPSKE 909


>gi|119471137|ref|ZP_01613669.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonadales bacterium TW-7]
 gi|119445793|gb|EAW27075.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonadales bacterium TW-7]
          Length = 920

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 21/342 (6%)

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           LSN   + +              +    T S +Y      + F  + ++  D  +SLQ +
Sbjct: 451 LSNLLVQPIIGLTNLMHGFDKSEKQHFNTESSWYEVLQLQEQFKMLGSALRDSIESLQAS 510

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQH 575
                      +I      + +  F    +   AE+   LT+  ++  +A++ K+ F+ +
Sbjct: 511 -----------NIKNQDLNKQLSQFNQQLEVKVAEQTDELTKAVKSANEANKAKSQFLAN 559

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+P+  I+G  ++L      +L  +Q   +E    SS  LL ++NDILD + ++A
Sbjct: 560 MSHELRTPMNGILGMGEVLLRD--STLTDEQRDLLETQQKSSKNLLQILNDILDFSKIEA 617

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKI 694
             M+++    +L   +  +    +  +H NN+   +     L      D  RL QI   +
Sbjct: 618 NAMQISPRATLLAPFIENIHSLFSPIIHSNNVEFIIQRSPDLPDCLNVDDLRLNQIIINL 677

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRR 752
           LSNA  F+  G  V L     +     SV ++G  I ++    +F+ F         +  
Sbjct: 678 LSNAQKFTQAG-FVRLSFDYKDEQLTVSVSDSGIGIEKEQQLLLFSEFTQADASVARKYG 736

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI--PSKE 792
           G GLGL+I +  I    G ++++S     +TI   I  P  +
Sbjct: 737 GTGLGLAICQGLIKKMEGEITLNSVPGLGSTIKFSIHAPKAQ 778


>gi|330936909|gb|EGH41034.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 975

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 157/370 (42%), Gaps = 9/370 (2%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATC 487
            N  +  +    D +   + V    GR+   N ++   L  + E          N+    
Sbjct: 554 LNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 613

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 +D   L       F D    L G    +    + +          +  ++++T+
Sbjct: 614 LAEQMHTDYLTLLENHQPVFSDRTIELPGKRMDVWQWTVPFFAADGQLQGLLGGWIDITE 673

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  + L+  +   L    S
Sbjct: 674 RKQLEQQLQEAMHLADQANEAKSAFLASMSHEIRTPMGAIIGLLE-LECEQALRLGKIPS 732

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q ++    S+T L+ L+ + LDLA ++AG M+L+ +   L +L + V +  + +  E  +
Sbjct: 733 QGLQVAHRSATELIALIGESLDLARIEAGGMQLSLAVTSLQELFDGVIELFSAQAGEKGV 792

Query: 668 RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD---FIFS 722
            +++   G+  G +  D  RL Q+   +L NA+ F+ +G+ V  L    D+ +       
Sbjct: 793 ELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPESTRVRIG 852

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           ++++G  I     + VF  F   +        G GLGLSI    + L  G +S+ S    
Sbjct: 853 IQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDISLHSEPGK 912

Query: 781 VTTINCRIPS 790
            T +   +P 
Sbjct: 913 GTLVTIDLPL 922



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +     ++L++ ++    LFD +   ++ RD  G ++  N SY++
Sbjct: 531 LVSLTWSSRLKVQIRQRQRVQRQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQ 590

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                 L    + ++M +         +      +    G        
Sbjct: 591 SLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLTLLENHQPVFSDRTIELPGKRMDVWQW 650

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL     +      A + F
Sbjct: 651 TVPFFAADGQLQGLLGGWIDITERKQLEQQLQEAMHLADQANEAKSAF 698


>gi|313200497|ref|YP_004039155.1| histidine kinase [Methylovorus sp. MP688]
 gi|312439813|gb|ADQ83919.1| histidine kinase [Methylovorus sp. MP688]
          Length = 1136

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    + +  L +  +   +A++ K+ ++  +S+ELR+PL +I+G+  LL
Sbjct: 647 NRQTGLLLREIELHRQTDAELQQARQVAEQANQAKSRYITGISHELRTPLNSILGYAQLL 706

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 S+ + +   +  I  S   LL+L+   LD+A +++G +  +   + L + + +V
Sbjct: 707 DNDV--SIPAARQPAIRVIRRSGEHLLSLIEGTLDIARIESGKLTFDIKPLRLPEFIQQV 764

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     +       G L   V AD++RL QI   IL NA+ F+ +G  V  +  
Sbjct: 765 VDMFELQARNKGLTFSYQLTGDLPDMVRADQKRLSQILINILGNAVKFTRQGGVV-FRLR 823

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
                 +  +++ G  I ++    +F  F   +  +     G GLGL+I +    L GG 
Sbjct: 824 YARELAVIEIEDTGPGILKEELDEIFEPFARGSAANNSTVAGTGLGLTISKMLTQLMGGE 883

Query: 772 VSISSSDEGVTTINCRI 788
           +S+ S     T    R+
Sbjct: 884 LSVRSVVGSGTVFQIRL 900


>gi|71907731|ref|YP_285318.1| PAS [Dechloromonas aromatica RCB]
 gi|71847352|gb|AAZ46848.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 680

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 14/288 (4%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           F DE+   +G   +  D    +S+          + +      R E +L  + E    A 
Sbjct: 108 FFDEQGEFRGYRGVGRDVTETHSMQ--VELHRYRSHLEDEVRRRTEESLK-ERERAISAS 164

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + K+ F+ ++S+E+R+P+  I+G T LL+          Q + +  +SAS+  LL+++ND
Sbjct: 165 QAKSIFLANMSHEIRTPMNAIVGLTHLLRKEI---TTPAQLEKLAQVSASADHLLSVIND 221

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD++ +++G   L+     L  ++  V   IA +     + + V           D  R
Sbjct: 222 ILDISKIESGNAALDELDFELEGMIRRVSSVIALRAQAKGLELIVDIRTLPTVLHGDPTR 281

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNR 741
           L Q+    L NA+ F+ +GS + L+   +          F V++ G  I  D  + +F  
Sbjct: 282 LSQVLINFLGNAVKFTVQGS-ITLRGRIEAETATDMVVRFEVEDTGIGISPDAQEKIFEA 340

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F        R   G GLGL+I +    +  G V + S+    +     
Sbjct: 341 FEQADQSTTRNYGGTGLGLAIAKHAAKMMKGDVGVRSTPGVGSVFWIT 388


>gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 668

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 85/422 (20%), Positives = 169/422 (40%), Gaps = 28/422 (6%)

Query: 388 HKDTWHLPNGQTLHVIVTSNP--RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            ++     +G +L V   + P  +GG       LT +++        ++      D+   
Sbjct: 103 QEEFLRRADGSSLTVRTRAAPRAQGGMEAHCLVLTGEIEARISLAKALREMEIVFDNALV 162

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           G  +   + RI+  N     ++    + L  +  + +     T + +Y  S      + +
Sbjct: 163 G-MILSRNHRIEKVNARGAEVFGHPPSDLVGTDASFLFATPETYADFYRASTKDLRESGM 221

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            +     R++   T+ + S      S+ P  P    +  F +V+   R E  L    +A 
Sbjct: 222 HSGEYRMRRADGATIVVRSHGK---SLSPEAPEEGVVWAFDDVSAQRRLEAELRASKQAA 278

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A   K  F+ ++S+ELR+PL  I+G T L+     G  + +  +Y+  I  S++IL++
Sbjct: 279 EAASVAKTQFLANISHELRTPLNGIMGLTQLMLD---GVADDETQEYLGIIRQSASILMH 335

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
           +V D+LDL+ V+AG + L          L  + ++ +T+            D  L +  +
Sbjct: 336 IVGDLLDLSNVEAGRLMLVMREFDPQAELLPLLRNFSTQSMLRPFSFGYHFDPLLPARLI 395

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD------------FIFSVKNNGS 728
            D  R+ QI   ++ NA  ++ KG+  V +    + G+               +V + G 
Sbjct: 396 GDPNRIKQICINLIDNAFKYTKKGTVSVRIGLWENPGNEPPPDVAPERIRLHIAVSDTGV 455

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I      ++F  F         +  G GLGL++      + GG +++ S     +T   
Sbjct: 456 GIEPSRQSAIFEPFGIGEDYLTKKYSGAGLGLTVARRLAGMMGGDITVESEPGQGSTFYL 515

Query: 787 RI 788
            +
Sbjct: 516 TL 517


>gi|260426521|ref|ZP_05780500.1| sensory box histidine kinase/response regulator [Citreicella sp.
           SE45]
 gi|260421013|gb|EEX14264.1| sensory box histidine kinase/response regulator [Citreicella sp.
           SE45]
          Length = 858

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 147/368 (39%), Gaps = 15/368 (4%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                ++   + + V   DG ++  N A   +     + +  G   R + A        +
Sbjct: 225 RLRTIVETSPDAIVVTDEDGLVRGFNTAAERMLGYGRDDV-FGKPARQLFAPTELPDERT 283

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVL--EYSIIPLPNAQTMLTFV--NVTDSVR 550
                FA        E +  + +L      +   E+SI        +      +++    
Sbjct: 284 ATLFAFADERRRPTPEERRFEISLRDRDGRLFPAEFSIDRAGTDDPLYVAYIRDISRWKE 343

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  LTE  +     +  K+ F+  +S+E+R+PL  ++G   LL+  +   L  +Q   +
Sbjct: 344 VEEQLTEARDRALAGERSKSEFLAVMSHEMRTPLNGLLGTLQLLRDEE---LTERQCAMI 400

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +   AS  +LL LVND+LDL   +AG M   ++   L  L+  V +++          + 
Sbjct: 401 DRTEASGRLLLELVNDVLDLTKFEAGKMTAEHAPFSLTALVGGVVETVRPIADRYRNALS 460

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNN 726
               G  G +V  D +RL Q+   ++ NA+ F+  G TV ++A   +         V ++
Sbjct: 461 WRWVGPEGDWVDGDARRLRQVLLNLVGNALKFTRDG-TVEIEAEYLDDVGNALELRVIDS 519

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+    +F  F +       +  G GLGL I + F  L GG +   S     +  
Sbjct: 520 GIGIREEDLARIFRDFETLDSSYAREAGGTGLGLGIAQRFARLMGGSIGAESEPGEGSLF 579

Query: 785 NCRIPSKE 792
             R+P  +
Sbjct: 580 WVRLPMPQ 587


>gi|284046954|ref|YP_003397294.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283951175|gb|ADB53919.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 1010

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 3/230 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +AD +KN F   VS+ELR+PLT+I+G+ +L+   ++G +N +Q++++  +  +   L  L
Sbjct: 755 EADRLKNEFFALVSHELRTPLTSIVGYVELVLEGEVGEVNDEQARFLGIVERNGKRLQRL 814

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V D+L +A V+AG + L +    L  ++ +       +  +  + +   ++        D
Sbjct: 815 VGDLLFVAQVEAGTLNLEHGDATLEAIVRDAVDGARPRAEQVGVTVAAETEPVPP-IRGD 873

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+   ++SNA+ F+  G  V +    D  +   +V + G  IP D    +F+RF 
Sbjct: 874 ADRLGQLVDNLISNALKFTPSGGDVTVTLRIDGDEVALAVADTGIGIPADEQARLFDRFF 933

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +    G+  G+GLGLSI ++    HGG + + S     TT    +P +
Sbjct: 934 RASTAVEGEIPGIGLGLSICQAIAEGHGGRIEVESEVGRGTTFRVVLPLR 983


>gi|94264446|ref|ZP_01288235.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455136|gb|EAT05358.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 702

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 150/395 (37%), Gaps = 35/395 (8%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAV-FGPDGRIKLSNPA------FRSLWKTEENRLSPG 477
           L+ +   L      TI  + +GV      D  I   N             +  ++  +  
Sbjct: 44  LQQEQQQLKTSVELTIARMMQGVVTRADGDYIIAAGNARDLMLKLAELEQRMCDDICTTP 103

Query: 478 THIRNIAATCSR------YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV------ 525
             + NI     R        +  + +   A  +TS   +++ L   ++ ++  +      
Sbjct: 104 NCLTNIYRDFYRDLVTVVSLSHENRFREAADAMTSVRHQQQILTKEIDDITAIINIRHAA 163

Query: 526 ------LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
                 L +    L      +    +       R +    +    A+  K+ F+ ++S+E
Sbjct: 164 DLKRLNLTFIAAGLLMTVVAVLNAWLIIPTLVIRPMQRVTDQAETANAAKSEFLANMSHE 223

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++G T LL  +    LN +Q      I AS   LL ++NDILD + ++AG + 
Sbjct: 224 IRTPMNGVLGMTTLLMDT---GLNREQRHLAGIIQASGEDLLRVINDILDFSKIEAGQLD 280

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
           L      L +L++    ++A      N+ +    D     F+  D  R+ QI + ++ NA
Sbjct: 281 LEVIDFDLQELVDNFAAAMAIPARAKNLALICELDPATPRFLRGDPGRIRQILTNLVGNA 340

Query: 699 MDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           + F+ +G   +   A   N +       V++ G  IP D    +F  F        R   
Sbjct: 341 IKFTEQGEVALHFDATEQNSEHLTLRCRVRDTGIGIPADKRDRLFKSFSQADSSTTRQYG 400

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           G GLGL+I +       G +S++S     +     
Sbjct: 401 GTGLGLAIAKQLAEKMEGAISVTSVAGQGSEFTVT 435


>gi|309789938|ref|ZP_07684514.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227958|gb|EFO81610.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 448

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 144/330 (43%), Gaps = 6/330 (1%)

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             +   +   L    H   + A            D  A I  +F          L + S 
Sbjct: 120 DQILPRDTTNLLLSFHELEVEANALDEAARIRFRDFSAQIDQAFTLFLSLATLLLVIASL 179

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTD--SVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +L +  I     Q            +   E+ ++E+   L +A++ K+ F+ ++S+ELR
Sbjct: 180 FLLRFGHIQAVAEQARRRAEQHLALLNSELEQRVSERTTELERANQAKDMFLANMSHELR 239

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GFT  L     G L + Q + +  I  S+  LL+++NDILD+A + AG +++ 
Sbjct: 240 TPLNAILGFTGTLLMKLPGPLTADQERQLNTIQRSARHLLSMINDILDMAKIQAGHLEIQ 299

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              +   ++LNEV   +     +  + + +I+   L     DR+ L QI   +++NA+ F
Sbjct: 300 PEPVNCAEVLNEVFDHLRPIAEQKRLELALIAPPTL-QIQTDRRALNQIMLNLVNNAIKF 358

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLS 759
           + +G  V ++    +      V + G  I E     +F  F  V++A   QR G GLGL 
Sbjct: 359 TDRGG-VRIEVEPRDTQVAIRVVDTGIGIREADLGLLFVEFGRVNSAEVRQREGTGLGLR 417

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I +    L GG + + S     +T    +P
Sbjct: 418 ISQRLAELLGGRIEVQSCYGEGSTFTLYLP 447


>gi|144900203|emb|CAM77067.1| CheB methylesterase:MCP methyltransferase, CheR-type
            [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1325

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 108/631 (17%), Positives = 221/631 (35%), Gaps = 41/631 (6%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
             AE   K  +L+   S    L ++ D  +   D AG +        K          + I
Sbjct: 716  NAELNEKVDELTRLNSDLDTLMEATDIGIVFLDNAGLVRRFTPMAGKIINLMDRDIGRPI 775

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY-KIVRVLNSFGEAGIAI--- 293
                           I        F E  +T+  G++    ++    +  G A   I   
Sbjct: 776  FNLSNNLDYPDLSDDIRLVLANSQFLEREATIADGSSTMLIRMHPYRSDQGAAAGMILTF 835

Query: 294  -DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS---FVELWEIDLAFLATN 349
             DV+       +L      L +L   +A+ +++  +   N +   F     I+   +   
Sbjct: 836  VDVTPIKGAERRLQMY---LDSLPYEMAVLEKDGQISLVNAAWRGFAAANGINPERVGVG 892

Query: 350  PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH---KDTWHLPNG-QTLHVIVT 405
             +   +      A   P++   +T +  + +V +        +   H PN  +   +   
Sbjct: 893  CNYFGVCR----ATDGPDRALAETAEAGVRAVLEGRAPSFMLEYPCHSPNEYRWFMMNAG 948

Query: 406  SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                GG +    N+T +   E K      +     +   E + +   D RI   NPAF  
Sbjct: 949  PTDSGGAVVSHINITDRKRGEEKLR----LAASVFECSGEAILIADSDERIISVNPAFVE 1004

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD--DERKSLQGTLELLSD 523
            +   +   +   T     +      +  +   +L    I   +  + R++ Q   E L+ 
Sbjct: 1005 MTGYQPQDILGKTPRTLASGRHDHSFYHAMWDELRTRGIWRGEVWNRRRNGQVYPEWLTI 1064

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            S ++  +  + N   +  F ++++   AE+ L + N  L         F    S++LR P
Sbjct: 1065 SAVKNQMGSILN--YVAVFTDISERKAAEQRLMDINAEL-------EQFAYVASHDLREP 1115

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  +  +  L++      L+++  +++ + +  +  + +L+  +L+ + +  G M     
Sbjct: 1116 LRMVNSYLTLIERRLGERLDAETQEFMRFATDGAKRMDSLILHLLEYSRI--GRMSSPSR 1173

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             I +N+LL      +     +    I V   G   S         ++F  ++ NA+ +  
Sbjct: 1174 LISINELLAPFMAGLMPMQDQRQGEITV--SGGECSVFVHESECTRLFQNVIGNALKYCD 1231

Query: 704  K--GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG-VGLGLSI 760
                  + +         + +V +NG  I  D    VF  F     R    G  G+GL++
Sbjct: 1232 PDQNPRITITCQNTGEFVLVAVADNGIGIAMDQQDKVFRMFQRLHPREAYGGGTGIGLAV 1291

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +  +  HGG +   S      T    +P+K
Sbjct: 1292 CKKIVENHGGRMWFESRAGEGATFYFTLPTK 1322



 Score = 71.1 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 100/313 (31%), Gaps = 33/313 (10%)

Query: 142  DLVAETQNDCAIKIEGRVSGSCA--FLRI---LSLDGIYSELAETTLKCKKLSNHISVFK 196
            D+     N   ++ E  ++   +   +R+    S  G  + +  T +    +       +
Sbjct: 790  DIRLVLANSQFLEREATIADGSSTMLIRMHPYRSDQGAAAGMILTFVDVTPIKGAERRLQ 849

Query: 197  VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA-----------IGESRKLFK 245
            +  DSL + +   ++ G I   N +++      GI  ++              +      
Sbjct: 850  MYLDSLPYEMAVLEKDGQISLVNAAWRGFAAANGINPERVGVGCNYFGVCRATDGPDRAL 909

Query: 246  EEIKKRMISSSALEKNFCETVSTLEH--GNNKSYKIVRVLNSFGEAGIA-IDVSKEITVN 302
             E  +  + +    +     +    H     + + +       G A ++ I+++      
Sbjct: 910  AETAEAGVRAVLEGRAPSFMLEYPCHSPNEYRWFMMNAGPTDSGGAVVSHINITDRKRGE 969

Query: 303  DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI-DLAFLATNPSNDELLEFLRS 361
            ++L     +      AI I D +  +   N +FVE+        L   P          S
Sbjct: 970  EKLRLAASVFECSGEAILIADSDERIISVNPAFVEMTGYQPQDILGKTPRTLASGRHDHS 1029

Query: 362  --ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT---IWMF 416
                   E      W+  +++  ++ + + +         L +    N  G     + +F
Sbjct: 1030 FYHAMWDELRTRGIWRGEVWNRRRNGQVYPE--------WLTISAVKNQMGSILNYVAVF 1081

Query: 417  ENLTVQVDLETKY 429
             +++ +   E + 
Sbjct: 1082 TDISERKAAEQRL 1094


>gi|332534398|ref|ZP_08410238.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036132|gb|EGI72607.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 939

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 122/242 (50%), Gaps = 6/242 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    + LR+A+++K+ F+ ++S+E+R+PLT I+G TD L        + K    +  I
Sbjct: 459 ELQAIAQELREANDVKSQFLANISHEIRTPLTAILGQTDALINELYEPESLKDE--LRVI 516

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              S  L +L+ND+LDL+ ++A  ++LN S   + +L+N+V     T+    N+R+ + +
Sbjct: 517 QRHSDHLKSLINDVLDLSKIEANRLELNISCFDIVELVNDVHAMFITQAKAKNLRLILDN 576

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             G       D  R+ QI   + +NA+ F+  G  +I+   +     +  VK+ G  +  
Sbjct: 577 QVGNEFYTKLDLIRVKQILINLCANAIKFTHAG-QIIIALNKSEQGLVIIVKDTGIGMSS 635

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              K +F  F    +   RR  G GLGLS+ +    + GG++S+ S  +  +  +  +P 
Sbjct: 636 KQLKLIFECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQSEYKKGSQFSFFLPC 695

Query: 791 KE 792
            E
Sbjct: 696 AE 697


>gi|319791369|ref|YP_004153009.1| signal transduction histidine kinase with cheb and cher activity
            [Variovorax paradoxus EPS]
 gi|315593832|gb|ADU34898.1| signal transduction histidine kinase with CheB and CheR activity
            [Variovorax paradoxus EPS]
          Length = 1370

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 91/508 (17%), Positives = 180/508 (35%), Gaps = 24/508 (4%)

Query: 297  KEITVNDQLTHTYEILHNLT----VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +     ++  H  + L NL     +A    D+  +++ +      L+ +  + L      
Sbjct: 734  ELKVKVEERGHINDDLQNLIASSEIATVFVDRGMHVKRYTPHAGNLFNLIPSDLG----- 788

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
              L + + S  + PE         N     +      D  H    + L      +   G 
Sbjct: 789  RSLFD-ITSRLEYPELEEDTAAAFNELRTIERHVPSTDGRHFL-ARILPYRTAEDKIEGA 846

Query: 413  IWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEE 471
            I  F +++     + K     +          +  +      G I   N   + ++   E
Sbjct: 847  ILNFFDISELRFAQDKVRAGEERLRLVAATTRDFAIITTDEAGLITTWNAGAQRIFGYTE 906

Query: 472  NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
              +     I  I     + +         A       DER   +        S +  S+ 
Sbjct: 907  EEMLR-RPIAVIFTAEDQAHGVPQQEMRRATETGRAADERWHERKDGSRFFCSGVTSSLD 965

Query: 532  PLPNAQTMLTFVNVTDSVRAERALTEK-------NEALRKADEIKNSFVQHVSYELRSPL 584
            P           ++T + + E A   +       N + + A+E+K+ F+  +S+EL+ PL
Sbjct: 966  PASGGGFAKIARDMTGTKQQELAQEHRLFKEKQANLSAQMANELKDKFLAVMSHELKQPL 1025

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              I    +LL      +      +  E I  +      ++ND+LDL+ +  G ++L+  T
Sbjct: 1026 NLIQMNAELLMHLPAAAQIPAVQRVGETIKRAVASQTRIINDLLDLSRIRTGKLRLSRVT 1085

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            + L +L+  V Q+      +  + ++   D  +     DR R+ QI   +LSNA+ F+  
Sbjct: 1086 VDLGELVQSVAQAAVADAPKKKLLLETHCDEAV-HCHGDRVRVEQIAWNLLSNAVKFTPD 1144

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVE 762
            G  + ++   +      +V + G  I  +    VF  F            G+G+GL++V+
Sbjct: 1145 GGRISVRVETEGDFARLTVADTGCGIAAEFLPHVFGMFNQADGDTALPNGGLGIGLALVQ 1204

Query: 763  SFINLHGGHVSISSS-DEGVTTINCRIP 789
                 HGG   + S+           +P
Sbjct: 1205 ELALAHGGRAEVKSAGPGEGAEFTVWLP 1232


>gi|24349687|gb|AAN56450.1|AE015782_2 sensor histidine kinase/response regulator [Shewanella oneidensis
           MR-1]
          Length = 929

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 10/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A  IK+ F+ ++S+ELR+PL  +IGF   L  +    L+S Q  Y+  I
Sbjct: 280 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT---PLHSSQVDYINTI 336

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+T LL ++NDILD + ++AG M L      L + L E    I+       + + V  
Sbjct: 337 ERSATNLLAIINDILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDI 396

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA-ARDNGDFIFS--VKNNGS 728
              +  +   D  R+ QI + ++ NA+ F+  GS  V L+  A+ +   +    V + G 
Sbjct: 397 APNVPDNVNGDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGI 456

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +  +SS +  +    
Sbjct: 457 GIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWF 516

Query: 787 RIPS 790
            +P 
Sbjct: 517 TLPL 520


>gi|306829563|ref|ZP_07462753.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249]
 gi|304428649|gb|EFM31739.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249]
          Length = 449

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 144/380 (37%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLHSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   I     D +      L L     + ++++   
Sbjct: 135 LNKSILELL-----KIEDEYELRDLITQIPELTIDSQDVNGEYLSLR----VRFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L   +     +++     +  ++ +V D+L L+ +D    +L+   I     +  +
Sbjct: 235 DEGAL--YDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATTQLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   ++  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+K+ G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|171696068|ref|XP_001912958.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948276|emb|CAP60440.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1321

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 157/380 (41%), Gaps = 24/380 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ ++D+E K   L  +  ETI+++ + +++F  + +    +     +   + +     
Sbjct: 565 DMSRKIDVEAKGEIL--ILKETINNMVDRLSIFCNEVQRVAKDVGVDGIMGGQADVAGLK 622

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + I    +   N     +L A +    D    +  G    L    +E       +  
Sbjct: 623 GRWKEITTDVNTMAN-----NLTAQVRAFGDITNAATDGDFTKL----VEVEASGEMDEL 673

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  V +   + +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +
Sbjct: 674 KKKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT 733

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q + +  +++ +  LL +++DILDL+ ++A  M +      L   +    ++
Sbjct: 734 ---DLTQYQREMLNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKT 790

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-------I 709
           +A K +E  + +    +  +    V D  RL QI   ++ NA+ F+  G           
Sbjct: 791 LAVKANEKFLDLTYRVNNSVPDHVVGDSFRLRQIILNLVGNAIKFTEHGEVSLTIQKASH 850

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           ++ A       F V + G  IP D    +F+ F        R   G GLGLSI +  +NL
Sbjct: 851 VQCAPYEYAIEFIVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNL 910

Query: 768 HGGHVSISSSDEGVTTINCR 787
            GG V + S     +     
Sbjct: 911 MGGDVWVKSEYGKGSKFYFT 930


>gi|229081928|ref|ZP_04214420.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2]
 gi|228701516|gb|EEL54010.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2]
          Length = 484

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 129/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PITSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + E  I +++          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVRLQLHASPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKIIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|225677104|ref|ZP_03788106.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590863|gb|EEH12088.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 472

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 161/379 (42%), Gaps = 28/379 (7%)

Query: 429 YNTLVKVQGETIDHLSE----GVAVFGPDGRIKLSN--------------PAFRSLWKTE 470
            N LVK++ E +  +S+     + ++  +GRI  SN                   L   +
Sbjct: 86  INQLVKLRAELLQSVSKVKDFSLILYDQNGRIIFSNFNTQDYDYEQLLTNDEIDKLLSNQ 145

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E   + G  + +I      ++  S     F  I+ S+++      G    L   +L   +
Sbjct: 146 EIFYTTGNTLTSIFPI---FHENSAKPSFFLKILRSYNNSYVIAYGLFLGLLLIILILIM 202

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             L  + T +         +    L +  EAL + +  K  F   V++ELR+PL  IIGF
Sbjct: 203 FYLHFSNTKMLAK----QHKTNIELQQIKEALEQENANKLKFFASVTHELRTPLNAIIGF 258

Query: 591 TDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +L+K   LGS+++ Q  +Y + I  + T LL L+ND+LD +  ++  + +      LN 
Sbjct: 259 AELIKNETLGSMDNSQYKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNK 318

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++     +  K+ E  I +K     K    +AD +R+ Q+   +LSN++ F+ KG  + 
Sbjct: 319 IVDSCINMLLPKLRETEINLKKEIPNKQLLVIADPKRMKQVIINLLSNSIKFTPKGGLIR 378

Query: 710 LKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           +      +         +NG  I +     V + F       +  G G+GL + +  + L
Sbjct: 379 MVVKENIEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRNEGTGIGLPLSKKLVEL 438

Query: 768 HGGHVSISSSDEGVTTINC 786
            GG   I S  +  TTI  
Sbjct: 439 MGGTFDIKSEAKLGTTITL 457


>gi|218438402|ref|YP_002376731.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171130|gb|ACK69863.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 831

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 112/610 (18%), Positives = 211/610 (34%), Gaps = 54/610 (8%)

Query: 208 HRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS 267
            R   G   W  ++  +    E     + +G     F ++I ++  + + +++   E   
Sbjct: 243 MRCADGTYKWI-LARGQAKWDEKGQPIRMVG-----FNQDISRQKEAEAEIQRLNQELEE 296

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF---DQ 324
            ++H   +     R  + F        +  E     Q+    +I+ N+ + + ++   D 
Sbjct: 297 RVQHRTAQLEAANRQKDEF--------LRSERQAKAQIQLYQDIVENIQIGLIVWRLDDP 348

Query: 325 NR----YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           N      L   N +  +L    L         D  L+       +   +  +   E +  
Sbjct: 349 NDKGSFRLIAANPAANDLIGTSL-----KECFDHRLDQCLPNAFISHPIILEAHAE-VIR 402

Query: 381 VYKSSETHKDTWHLPNGQT--LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
             ++    K T+  P G T  L + +   P       FE++T +   E       +    
Sbjct: 403 TQQAQAIPKFTYTHPQGGTKILTLKLFPLPDNCVGVAFEDITQRKQTEKALVGSTRRYRL 462

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            ++ + E +     +G     NPA+  +                I A   R   +    +
Sbjct: 463 VVNSVKEIIFQTDLNGCWTFLNPAWTEITGYTIIESLNHHFTDFIFAPDDRQQCDQMFQE 522

Query: 499 LFAAIITSF---------DDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNVTD 547
           L       F         D+  + L+ T +L  D   E  Y+I+   N  T         
Sbjct: 523 LIEGKREVFQTEFRCQTKDENFRWLEMTAQLSQDEEAENNYTILGTINDVTERKRTEAIL 582

Query: 548 SVRAERA------LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
             RA         L      L K +   + F    S++L++PL  I   +  L+      
Sbjct: 583 QARANELIRLNTVLLTTTAQLEKRNHELDQFAYVASHDLKAPLRAIANLSVWLEEDLRDK 642

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+      +E +      +  L+N +L  + V  G +K     I +  LL EV  S+A  
Sbjct: 643 LDEDTRYQMELLRGRVHRMEALINGLLQYSRV--GRLKGQAEVINVEQLLKEVIDSLAP- 699

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFI 720
                   K+   G++ + V     L Q+F+ +L NA+         + + A      + 
Sbjct: 700 ----PPEFKIDIKGQMPTLVTQPFPLRQVFANLLGNALKHHHNHRGHIEISAQEHEQFYQ 755

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           FSV+++G  I       +FN F +   R +    G+GLSIV+  +    G + + S    
Sbjct: 756 FSVRDDGPGIDPLYHDKIFNIFQTLEARDKTENTGIGLSIVKKTVETQKGTIWVESQLGQ 815

Query: 781 VTTINCRIPS 790
            TT +   P 
Sbjct: 816 GTTFHFTWPK 825


>gi|331016310|gb|EGH96366.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 1195

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 177/465 (38%), Gaps = 21/465 (4%)

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                 +   +  ELL  L   NK  E+      +        SS      W        
Sbjct: 468 WSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSSLPQPSLWGRIPRWVF 524

Query: 401 HVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            V+  +   G     +       +  ++  E + N  +  +   +D +   + V    GR
Sbjct: 525 WVVALALLTGLVSLAWSSRLKVQIRQRLKAERQLNDQLAFKHALLDGIPNPIYVRDLKGR 584

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---FDDERK 512
           +   N ++         +++    +        R   E    D  A +      F D   
Sbjct: 585 LISCNRSYEQSLGVSFEQMNGRRLLD--VEVIPRPLAEQMHADYLALLENHQPVFSDRTI 642

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            L G    +    + +          +  ++++T+    E+ L +      +A+E K+ F
Sbjct: 643 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 702

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  IIG  +L     L    +  +Q ++    S+T L+ L+ + LDLA 
Sbjct: 703 LASMSHEIRTPMGAIIGLLELECEQALRRGEAP-TQGLQVAHRSATELVALIGESLDLAR 761

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIF 691
           ++AG M+L+     L      V    + +  E  + +++  ++   G +  D  RL Q+ 
Sbjct: 762 IEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQVV 821

Query: 692 SKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +L NA+ F+ +G+ V+ ++ + D  D       + ++G  I     + +F  F   A 
Sbjct: 822 HNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAAD 881

Query: 748 RG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGLSI    + L  G +S+ S     T +   +P 
Sbjct: 882 DTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPL 926



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 57/168 (33%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +     ++L++ ++    L D +   ++ RD  G ++  N SY++
Sbjct: 535 LVSLAWSSRLKVQIRQRLKAERQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQ 594

Query: 225 NT----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +     E         +    +   E++    ++     +      +    G   +    
Sbjct: 595 SLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTIELSGKRMNVWQW 654

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL     +      A ++F
Sbjct: 655 TVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 702



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 128/407 (31%), Gaps = 59/407 (14%)

Query: 63  SEICDQLSKYHSL------LTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE 116
           +++  ++S+   L      +        V        ++   L +  +  +      SF 
Sbjct: 318 ADLLARISRMTGLQFVHKEVASTQQSIEVLRAG--RADMNTTLAENAERRKFLDFTYSFG 375

Query: 117 --NWLKFHHYIKLSK-ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDG 173
             +W+   H  + S+ + + L   GQ   L A      A++   +       LR++    
Sbjct: 376 GNSWMFVVHSDRSSQVSLDSL--SGQVLALPAR----HALEEMIKREYPLIKLRLVETYD 429

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
               L E+      + N    +      L      R   G   W+   +  +        
Sbjct: 430 QARALVESGAADATIQNEAGAYLFPSGQLKV---ARSVDGK--WSPDRF--SVIKTQPEL 482

Query: 234 QKAIGESRKLFK----EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
              + ++ + F       I+ + + SS  + +    +          + +V +    G  
Sbjct: 483 LGILNKALEEFPVAELRSIRLKWLGSSLPQPSLWGRIP------RWVFWVVALALLTGLV 536

Query: 290 GIA----------IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
            +A            +  E  +NDQL   + +L  +   I + D    L   NRS+ +  
Sbjct: 537 SLAWSSRLKVQIRQRLKAERQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSL 596

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
            +    +            L     +P  L  +   + +  +        D     +G+ 
Sbjct: 597 GVSFEQMNGR--------RLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTIELSGKR 648

Query: 400 LHVIVTSNP----RG---GTIWMFENLTVQVDLETKYNTLVKVQGET 439
           ++V   + P     G   G +  + ++T +  LE +    V++  + 
Sbjct: 649 MNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQA 695


>gi|254428281|ref|ZP_05041988.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196194450|gb|EDX89409.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 641

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 97/404 (24%), Positives = 170/404 (42%), Gaps = 31/404 (7%)

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVK------VQGETIDHLSEGVAVFG--PD--GRI 456
               G + ++E      D E   N +++       Q    + + EG       PD  G +
Sbjct: 89  RDGDGQVLLYEG----RDREESNNEIIEFHSGIYRQSVAPEGMLEGAVERDDRPDRIGEV 144

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-Q 515
            L   + R L + +E  L+    I    A     +         AA +       ++L Q
Sbjct: 145 VLGMSSARLLARQKEILLASM--IPAFFAMILGLWIAHYLARQIAAPLGYLSGLLRTLRQ 202

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNSF 572
           G   +  +S L+  +  L +    L         + + A   L + +     A + K+ F
Sbjct: 203 GEYSVRGNSRLQGELGELQDNINELAGALEGARHKQQAAMTELQQAHRQAETASQAKSDF 262

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+ELR+P+  ++G   LL+ +     N +Q +Y E    S+  LL+++NDILD + 
Sbjct: 263 LAMMSHELRTPMNGVLGMLQLLEETAQ---NGEQQEYTEAALESTGHLLDVINDILDFSR 319

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQI 690
           ++AG M L+ S   L  LL     +         + +++  D  L   V   D  RL Q+
Sbjct: 320 IEAGRMDLDPSFFELQPLLQNCVATFRYVAESKGLYLRLEGDEVLAGKVTRSDPTRLRQV 379

Query: 691 FSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNA 746
            S ++SNA+ F+ +G  TV +      GD++    +V + G  IPE    S+F  F    
Sbjct: 380 LSNLISNAVKFTQEGGVTVTVSVRPVRGDWLDLSIAVADTGIGIPEAKRSSLFKAFSQID 439

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               RR  G GLGL+I      + GG++S+ S ++  +     +
Sbjct: 440 SSTSRRFGGTGLGLAIARRLSEMLGGNLSVGSQEDAGSVFTLSL 483


>gi|186682661|ref|YP_001865857.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465113|gb|ACC80914.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1242

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 149/320 (46%), Gaps = 19/320 (5%)

Query: 484  AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                    + S   ++   ++++   E   ++G LE+ +D   +Y I P    + +    
Sbjct: 780  LQLLRELRSASSTREVPIILLSARAGEESRVEG-LEMGAD---DYLIKPFSARELLARVR 835

Query: 544  NVTDSVRAER-ALTEKNEALRKA---------DEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               +  R  + AL ++ E +R+          + +K+ F+Q +S+E+R+PL  ++G+  +
Sbjct: 836  TNLELSRLRKDALAQQAERIREQAARVEAEAANRMKDEFLQVLSHEIRTPLNGMLGWVKM 895

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+  KL S  S  ++ +E I  ++     LV+D+LD++ +  G ++L    + L  ++ E
Sbjct: 896  LRQGKLDS--SATTRALETIERNANAQAKLVDDLLDVSCIIRGQLRLEKRPVSLISVITE 953

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +++  +    +I I  + D  + S   D  RL Q+   +LSNA+ F+  G  V +   
Sbjct: 954  AIETLKPQAEAKDITINCMLDRYVSSVSGDASRLQQVAWNLLSNAIKFTPSGGQVEVSLQ 1013

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
                D +  VK+ G+ I  D    +F RF        R   G+GLGL+IV   + +HGG 
Sbjct: 1014 AVGTDALLQVKDTGNGIKADFLPYIFERFRQADASTTRTYGGLGLGLAIVRHLVEMHGGT 1073

Query: 772  VSISSSDEG-VTTINCRIPS 790
            V   S   G   T   R+P 
Sbjct: 1074 VEADSPGLGLGATFGVRLPL 1093



 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 3/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A     +K +AL + D  K +F  +VS+E R+PLT I+G  + +  ++   L S++ + 
Sbjct: 414 QAYEEERKKAQALAELDRTKTAFFNNVSHEFRTPLTLILGPLEDVLNNQNARLTSEEREQ 473

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  +S  LL LVN +LD + ++A  ++  Y  I L     E+     + +    +R+
Sbjct: 474 LQLVHRNSLRLLKLVNTLLDFSRIEANRIQAVYEPIDLAVFTTELASVFRSTIERAGLRL 533

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V       +   DR+   +I   +LSNA  F+  G  + +            V++ G  
Sbjct: 534 IVDCPPLPEAVYVDREMWEKIVLNLLSNAFKFTFIG-QISVSLRWYTEYVELEVQDTGIG 592

Query: 730 IPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    +F RF            G G+GLS+V+  I LHGG + +SS     ++    
Sbjct: 593 IPAEELPHLFERFYRVQGLQGRTYEGSGIGLSLVQDLIRLHGGSIRVSSKVNQGSSFIVL 652

Query: 788 IPS 790
           +P+
Sbjct: 653 LPT 655


>gi|298528766|ref|ZP_07016170.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512418|gb|EFI36320.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1207

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/510 (15%), Positives = 191/510 (37%), Gaps = 29/510 (5%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
              +  ++L +   I+  +   +AI   +      N ++   +      +  +   + + +
Sbjct: 703  RRSQRERLKNYERIISRINDGMAIVAPDYRYIIVNDAYQREFGKPREEIEGHTVEELVGK 762

Query: 358  FLRSANKLP--------EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             +  +   P        E++  +     +  V K    +   ++  +G            
Sbjct: 763  EVFYSKIKPRLDTAFAGEEVVSEDSFPGLDGVLKYKVMNYYPFYEKDGSV---------- 812

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
             G +   ++ T Q   E       ++     + + EG+ +     R    N     ++  
Sbjct: 813  AGVVATGKDFTEQKKAEDALRESEELLRTVNETVGEGIVLKDASDRFVHWNKTASDIFGL 872

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLE 527
            +       T              E  G D  +       +   ++   ++  + S   L+
Sbjct: 873  DIEHARGQTPEVFDIKFIHEDGTEYAGDDFPSQHTLRTGEPCNNVIMGIKRNNQSTTWLK 932

Query: 528  YSIIPLPNAQ------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +  P+           +++F ++T+   AE  L   N+ L+K++  K+     V+++L+
Sbjct: 933  INTRPIFTPGEAKPYLVVVSFSDITERKHAEEKLKSMNQQLQKSNAEKDELFSFVAHDLK 992

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +P+   +  T++L          +  + +  +  SS  L  L+ D+L  A V  G++   
Sbjct: 993  APIAGFLSLTEVLNKYFDDFSMDELREMLSEMHKSSEGLHALLEDLLQWARVKKGMLVYT 1052

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              ++ LNDL+        +   + +I +       + +  AD++ +  +   +L NA+ F
Sbjct: 1053 PESVCLNDLVTAGISLARSVADQKDINLWNNVPRGM-NLYADQKMIYSVIRNLLFNALKF 1111

Query: 702  SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF--NRFVSNAHRGQRRGVGLGLS 759
            + +G  V + A +        + ++G  + +D    VF  ++  S       +G GLGL+
Sbjct: 1112 TYQGGNVSIHAHKQGSMVKIMIHDDGMGMDQDTAARVFAIDKRKSVKGTDGEKGTGLGLA 1171

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + + F+  HGG + I S     TT+   +P
Sbjct: 1172 LCKEFVEQHGGRIWIDSEPGQGTTVYFTVP 1201



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/345 (12%), Positives = 108/345 (31%), Gaps = 45/345 (13%)

Query: 136 KEGQSFDLVAETQND--CAIKIEGRVSGSCAFLRILSLDGIYSEL--------------- 178
            EG         ++     +++EG V G        +L G   E                
Sbjct: 636 CEGCPLAEQYSDRSGFSARLEVEGFVLGLITVSIPANLAGDLEEQDLFNSLAWTIAQGIQ 695

Query: 179 -AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGIV 232
                   +     +  ++ +   ++  +         +  N +Y++       E EG  
Sbjct: 696 RIRLEKIRRSQRERLKNYERIISRINDGMAIVAPDYRYIIVNDAYQREFGKPREEIEGHT 755

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG--NNKSYKIVRVLNSFGEAG 290
            ++ +G+  ++F  +IK R+ ++ A E+   E       G    K           G   
Sbjct: 756 VEELVGK--EVFYSKIKPRLDTAFAGEEVVSEDSFPGLDGVLKYKVMNYYPFYEKDGSVA 813

Query: 291 IAI----DVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
             +    D +++    D L  + E+L      +   I + D +      N++  +++ +D
Sbjct: 814 GVVATGKDFTEQKKAEDALRESEELLRTVNETVGEGIVLKDASDRFVHWNKTASDIFGLD 873

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           +            ++F+          ++ +  ++     +            N  T  +
Sbjct: 874 IEHARGQTPEVFDIKFIHEDGTEYAGDDFPS--QHTLRTGEPCNNVIMGIKRNNQSTTWL 931

Query: 403 IVTSNPRGG--------TIWMFENLTVQVDLETKYNTLVKVQGET 439
            + + P            +  F ++T +   E K  ++ +   ++
Sbjct: 932 KINTRPIFTPGEAKPYLVVVSFSDITERKHAEEKLKSMNQQLQKS 976



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/411 (10%), Positives = 113/411 (27%), Gaps = 32/411 (7%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI--VFQKAIGESRKLFKEEI-KKRM 252
           + +  +    ++     G  L  N +  +    +    +       + +++ +   + ++
Sbjct: 23  QGILMNAPVCIFTTTPDGRYLSVNNTLARMHGYDSPRQLMDSVTDIATQIYADPADRDKL 82

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSFG----EAGIAIDVSKEITVNDQ 304
            S              L H + + + +      + +  G      G    +++       
Sbjct: 83  KSMLEQYGQVTNFECRLRHRSGRIFWVSENISVIKDKDGNITAYQGFNQAITERKQTELA 142

Query: 305 LTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L  + E            +  +D      + +  +  +   D       P     L+ + 
Sbjct: 143 LHKSEERFSLAMQATRDGLWDWDVTTGEVYFSPGYARMLGYDST--EVPPHVQTWLDLIH 200

Query: 361 SANK---LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-GTIWMF 416
             +K       L+      + F V    +     W    G+   V    + +    I   
Sbjct: 201 PEDKEKAYQANLDCINNLVDSFEVEFRMQAKNRDWVWILGRGSAVRRDESGKALRMIGTH 260

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T +   E       +     I+     V +    GR++  N     + K   N+L  
Sbjct: 261 TDITNRKQAEEARIASEQKFKNLIEKCPASVMLLDHQGRVEFVND--WHIEKFANNKLGK 318

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN- 535
              +           N     ++         +          +     +    +P+   
Sbjct: 319 EYFLGRSIHELPGLVNAGVDTEISRVFQGDDVELENVYFPEFAVGGSGWVNIRAVPVYQG 378

Query: 536 ---AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
              A  +L   N+T   + E AL +  +  R   E     +   S+   +P
Sbjct: 379 GRVAGGVLLRENITARKKMETALQQSQQKFRSLVENTQDVIY--SH---TP 424



 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/376 (14%), Positives = 118/376 (31%), Gaps = 45/376 (11%)

Query: 141 FDLVAETQNDCAIKIEGRVSGSCAFLR-----ILSLDGIYSELAETTLKCKKLSNHISVF 195
           F+     ++     +   +S     ++     I +  G    + E       L      F
Sbjct: 95  FECRLRHRSGRIFWVSENIS----VIKDKDGNITAYQGFNQAITERKQTELALHKSEERF 150

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
            +   +    +W  D     ++ +  Y +    +       +     L   E K++   +
Sbjct: 151 SLAMQATRDGLWDWDVTTGEVYFSPGYARMLGYDSTEVPPHVQTWLDLIHPEDKEKAYQA 210

Query: 256 ---------SALEKNFCETVSTL----EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
                     + E  F             G   + +      +    G   D++      
Sbjct: 211 NLDCINNLVDSFEVEFRMQAKNRDWVWILGRGSAVRRDESGKALRMIGTHTDITNRKQAE 270

Query: 303 DQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +    + +   NL      ++ + D    ++F N      W I+    A N    E    
Sbjct: 271 EARIASEQKFKNLIEKCPASVMLLDHQGRVEFVND-----WHIEK--FANNKLGKEYF-L 322

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN---GQTLHVIVTSNP--RGGTI 413
            RS ++LP  +N       I  V++  +   +  + P    G +  V + + P  +GG +
Sbjct: 323 GRSIHELPGLVNAGV-DTEISRVFQGDDVELENVYFPEFAVGGSGWVNIRAVPVYQGGRV 381

Query: 414 ----WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
                + EN+T +  +ET      +     +++  + +    P+G     +P    L   
Sbjct: 382 AGGVLLRENITARKKMETALQQSQQKFRSLVENTQDVIYSHTPEGHFTYLSPQVSDLLGY 441

Query: 470 EENRLSPGTHIRNIAA 485
           E   L  G + +++  
Sbjct: 442 EVQELL-GKNFQDLVH 456



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 100/342 (29%), Gaps = 44/342 (12%)

Query: 117 NWLKFHHYIKLSKA-------TEKLRKEGQS-FDLVAETQNDCAIKIEGRVSGSCAFLRI 168
            WL   H     KA          L    +  F + A+ ++   I   G         + 
Sbjct: 194 TWLDLIHPEDKEKAYQANLDCINNLVDSFEVEFRMQAKNRDWVWILGRGSAVRRDESGKA 253

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN----ISYKK 224
           L + G ++++       +        FK L +     V   D  G + + N      +  
Sbjct: 254 LRMIGTHTDITNRKQAEEARIASEQKFKNLIEKCPASVMLLDHQGRVEFVNDWHIEKFAN 313

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL---EHGNN----KSY 277
           N   +     ++I E   L    +   +      +    E V        G+     ++ 
Sbjct: 314 NKLGKEYFLGRSIHELPGLVNAGVDTEISRVFQGDDVELENVYFPEFAVGGSGWVNIRAV 373

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL--TVAIAIFD--QNRYLQFHNR 333
            + +     G   +  +++    +   L  + +   +L       I+      +  + + 
Sbjct: 374 PVYQGGRVAGGVLLRENITARKKMETALQQSQQKFRSLVENTQDVIYSHTPEGHFTYLSP 433

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
              +L   ++  L      D +              +    +  + +  K+ + H +  +
Sbjct: 434 QVSDLLGYEVQELLGKNFQDLV-----------HPQDLPVVQRGLDNALKTDQNHGEVEY 482

Query: 394 L---PNG--QTLHVIV--TSNPRG---GTIWMFENLTVQVDL 425
                +G  +  HV V    N  G     + +  ++T +   
Sbjct: 483 RLLHKDGHYRWFHVRVSFQRNSEGEIESVLGVARDITERKQA 524



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 3/159 (1%)

Query: 412 TIWMFENLTVQVDLE---TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             W       ++ LE         +K     I  +++G+A+  PD R  + N A++  + 
Sbjct: 686 LAWTIAQGIQRIRLEKIRRSQRERLKNYERIISRINDGMAIVAPDYRYIIVNDAYQREFG 745

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +   T    +         +      FA      +D    L G L+    +   +
Sbjct: 746 KPREEIEGHTVEELVGKEVFYSKIKPRLDTAFAGEEVVSEDSFPGLDGVLKYKVMNYYPF 805

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                  A  + T  + T+  +AE AL E  E LR  +E
Sbjct: 806 YEKDGSVAGVVATGKDFTEQKKAEDALRESEELLRTVNE 844


>gi|295690575|ref|YP_003594268.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295432478|gb|ADG11650.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 1128

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 144/342 (42%), Gaps = 5/342 (1%)

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDER 511
           D R+        S              +++      R   E     +         +++ 
Sbjct: 343 DDRVLTLLEQASSTIGVGLRSARYRAQLQDSLEETQRQSEELQVQSEELRVSNEELEEQG 402

Query: 512 KSLQGTLELLSDSVLEYSII-PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           ++L+ T   L     E          Q  +      D  R   A+  K   L +A + K+
Sbjct: 403 RALKETQTRLEQQQAELEQTNSQLEEQAQMLETQRDDLERTSAAVALKARELEQASQYKS 462

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+ELR+PL +++  + LL  +  G+L ++Q ++ + I +S   LL+L+NDILDL
Sbjct: 463 DFLANMSHELRTPLNSLLILSKLLSDNPNGNLTAEQVKFAQTIESSGNDLLSLINDILDL 522

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG +++   ++ L  L  +++Q          +   +         V  DRQRL Q
Sbjct: 523 SKIEAGHIEVRPESVSLQRLTGDLRQLFNPVADSRKLDFAIEVAADCPLVVETDRQRLEQ 582

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-- 747
           +   +LSNA  F+ KG   +   A  N    F+VK+ G  +  D  +++F  F       
Sbjct: 583 VLKNLLSNAFKFTEKGGVRLEIKAASNDRIAFAVKDTGIGVSRDQQEAIFEAFRQADGTI 642

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +  G GLGLSI      L GG +++ S     +     IP
Sbjct: 643 SRKYGGTGLGLSISRQLSRLLGGSITLESQPGEGSVFTVTIP 684


>gi|42522578|ref|NP_967958.1| phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
 gi|39575110|emb|CAE78951.1| Phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
          Length = 477

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 169/374 (45%), Gaps = 21/374 (5%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
              + +Y    +     +  ++EG+     D +I   N  F + + + +        +++
Sbjct: 121 KSRKARYLQSQEESQAFMSAVAEGLVSVSLDEKILYFNSQFAAQFLSSDLLNGQILRLKD 180

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQ-GTLELLSDSVLEYSIIPLPNAQTMLT 541
              +       SD  + F   I     +R +++  TL          S+ P+ N +T   
Sbjct: 181 AIRS-------SDVLEGFGKTIKIGKVQRFTVKLPTLIDNQPRFFAVSVNPIRNEKTQEI 233

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
           +  V         +      +++A++I+  FV + S+ELR+PLT+I G+ D LK      
Sbjct: 234 YGVVG--------IFHDITEMKRAEQIRMDFVGNASHELRTPLTSIKGYVDTLKEDVKTG 285

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +  ++++ +S +   L++LVND+L + T++A   +L    I    +   V   +A  
Sbjct: 286 QIQQAGKFLDIVSRNIDRLMDLVNDMLSINTLEASNSELKLEMIHPLAISEHVVSELAVM 345

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFI 720
             E NI I+V  +G +  F+AD +++ Q+   ++SNA+ +   G T+ ++  RD     I
Sbjct: 346 AAEKNITIRV--NGDVPPFLADARKVEQVLRNLVSNAVKYIPSGKTIQIRWERDIKEYII 403

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             V ++G  IPE     +F RF        R   G GLGL+IV+  +  HGG V++ S  
Sbjct: 404 LRVIDDGQGIPEQHLDRLFERFYRIDKGRTRDAGGTGLGLAIVKHIMQSHGGTVAVKSIV 463

Query: 779 EGVTTINCRIPSKE 792
           +  +   C  P ++
Sbjct: 464 DQGSEFICSFPIRK 477


>gi|75760732|ref|ZP_00740755.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491787|gb|EAO54980.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 484

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ + P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQM-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + E  I I +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHSSPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|306825162|ref|ZP_07458504.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432598|gb|EFM35572.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 449

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 143/380 (37%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLHSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   I     D + +    L L     + ++++   
Sbjct: 135 LNKSILELL-----KIEDEYELRDLITQIPELTIDSQDANGEYLSLR----VRFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L   +     +++     +  ++ +V D+L L+ +D    KL+   I     +  +
Sbjct: 235 DEGAL--YDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATTKLDIELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRNQDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|238754497|ref|ZP_04615852.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
 gi|238707326|gb|EEP99688.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
          Length = 902

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 248 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 304

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 305 QRSANNLLSIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQV 364

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNGDFIFSVKNNGS 728
           +  +    V D  RL Q+ + +L NA+ F+  G+  + +      R        +++ G 
Sbjct: 365 NNDVPEQVVGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSLRSHTRRQIKLAVEIQDTGI 424

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +    G +S  S     +T   
Sbjct: 425 GISEQQQSQLFQAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRF 484

Query: 787 RI 788
            I
Sbjct: 485 HI 486


>gi|23014940|ref|ZP_00054733.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum
           MS-1]
          Length = 1179

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 140/334 (41%), Gaps = 6/334 (1%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           P      +  E  L     +    A         +        + + ++E +  +  L++
Sbjct: 414 PMLALNIEILERNLRTRDLLEESQAQAEELKASEEELRAQGEALQAANEELRVSEEELKV 473

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
             +++   +     NA+ +       +  R E         + +A   K+ F+ ++S+EL
Sbjct: 474 QQEALQSANEELRLNAEALEARGLALEEARTEADRRAIE--IEQASRYKSEFLANMSHEL 531

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL +++     L  ++ G+L+  Q +    I  S   LL L+ND+LDL+ V+AG M L
Sbjct: 532 RTPLNSVLILARDLADNETGTLSDDQVESARIIHESGAHLLALINDVLDLSKVEAGKMSL 591

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
           +  TI   DL   ++        +  +   V S   L  +  ADR ++ QI + ++SNA+
Sbjct: 592 DPVTIATADLAQVIRGRFGPVAADKGLEFTVESAPDLPRTMKADRGKIEQIANNLVSNAI 651

Query: 700 DFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            F+ +G   V L    D      SV + G  I  +  + VF  F        R   G GL
Sbjct: 652 KFTPEGGVAVRLALDHDGQALALSVADTGIGILPEDRQRVFAAFEQADSSTSRQFGGTGL 711

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GL+I      L GG +++ S+ +  +     +P 
Sbjct: 712 GLTISRRLARLMGGDITLESNGDRGSVFTLLMPL 745


>gi|312171320|emb|CBX79579.1| K07678 two-component system, NarL family, sensor histidine kinase
           BarA [Erwinia amylovora ATCC BAA-2158]
          Length = 924

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   +LNS Q  Y+  I
Sbjct: 293 ELDMAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTTLNSTQRDYLHTI 349

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +  
Sbjct: 350 ERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNI 409

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARDNGDFIFSVKNNGS 728
              +  + + D  R+ QI   +L NA+ F+  G+  + ++    + +  +    + + G 
Sbjct: 410 QSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTGI 469

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 470 GISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF 529

Query: 787 RI 788
            I
Sbjct: 530 HI 531


>gi|117925659|ref|YP_866276.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609415|gb|ABK44870.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 899

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 11/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   ++  +K+ F+  +S+E+ +P+  ++G  +LL      +L+ +Q +YVE  
Sbjct: 264 ELATARDQALESVRLKSEFLATMSHEISTPMNGVVGMLELLDEK---TLSPQQQEYVEIA 320

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++NDILD + V+AG + L          + EV   +A +  +  + +   +
Sbjct: 321 KHSAEALLAIINDILDFSKVEAGHLVLESIPFQPLMEMEEVVALLAPRAQDKGVALVTEA 380

Query: 674 DGK--LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNG 727
             +   G  V D  R  Q+ + ++ NA+ F+ +G  V+    +      G   FSVK+ G
Sbjct: 381 QWQVLPGQVVGDPLRFRQVLTNLIGNAIKFTQQGEVVVALGWQAGQGTAGVLHFSVKDTG 440

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D  K +F  F        RR  G GLGL+I    I L GG + + S         
Sbjct: 441 VGIDADTQKKLFQVFTQADGSTTRRFGGSGLGLAISRQLIELQGGQIGVESDLGQGAHFF 500

Query: 786 CRIP 789
             +P
Sbjct: 501 FSVP 504


>gi|325106876|ref|YP_004267944.1| integral membrane sensor hybrid histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967144|gb|ADY57922.1| integral membrane sensor hybrid histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 556

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 10/248 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGSLNSKQSQYVEYI 613
           L   NEAL++A + K+ F+ ++S+E+R+P+T IIG  +LL +   L    +++   ++ I
Sbjct: 148 LAVDNEALKQASQAKSEFLANMSHEIRTPMTAIIGNAELLYELGDLERAPAERLDAIQAI 207

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S+ LL+++NDILDL+ ++AG +           ++ EV   ++ +     + +    
Sbjct: 208 KRNSSHLLDVINDILDLSKIEAGKLSHQLDRHDPQQIVQEVLDLLSVRAEAKQLVLSSRV 267

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSS 729
           +G +  + + D  RL QI   ++ NA+ F+  GS  ++   R+          V + G  
Sbjct: 268 EGLVPETILTDDTRLRQILLNVVGNAIRFTKSGSVKVVMRFRETTQRNQLEMEVIDTGIG 327

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I ++    +F  F        R   G GLGL+I        GG +++ S     +     
Sbjct: 328 IDQETQNRLFEPFTQADTSTTRQFGGTGLGLAISRRLARTLGGDLTLESEPGIGSRFLIS 387

Query: 788 I---PSKE 792
           I   P  E
Sbjct: 388 IDPGPLSE 395


>gi|281417241|ref|ZP_06248261.1| histidine kinase [Clostridium thermocellum JW20]
 gi|281408643|gb|EFB38901.1| histidine kinase [Clostridium thermocellum JW20]
          Length = 501

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 163/382 (42%), Gaps = 17/382 (4%)

Query: 420 TVQVDLETKYNTLVKV----QGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRL 474
           + +  L  +Y  +++       E  + +   +     P   I   N   +   K     +
Sbjct: 79  SGRKLLAERYYQILRRKYNCLYEIFNSIELPIVSISYPSFNIIGINNKAKKDVKLLRKCV 138

Query: 475 SPGTHIR---NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           +    ++   NI    S+ Y+  +   L   +   F      L       +   + Y ++
Sbjct: 139 AFVREVKKGNNILNALSKVYSCRNQKYLAEML---FTKSPVYLPNVEIDNNGRKIYYKLM 195

Query: 532 --PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             P+ N++  +    +      +    E+ + +      K+ F+  +++E ++PL  I  
Sbjct: 196 HRPILNSRNKIVGFLIIPIDITQE--IEQKKYIENLARFKDEFLYGITHEFKTPLVVISS 253

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               ++      L  +  +Y+  I  ++   + LVN++LD+A ++AG +K+    + +  
Sbjct: 254 ALQAIEALCRDELTDRVKKYLNRIKQNTFRQIRLVNNLLDIARIEAGHIKIFKRNLDIVA 313

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L   + +S++       +++   S+        D ++  +I   +LSNA+ F+ K  +V 
Sbjct: 314 LTRLITESVSMFADLKGVQLLFYSNIDKKIIAIDEEKYERIMLNLLSNAIKFTPKDRSVY 373

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           ++ +   G     VK++G  IP+D  K++F RF  V ++      G G+GLS+V  F+N 
Sbjct: 374 VEVSAKEGCVEIKVKDSGIGIPKDKIKTIFERFGQVDSSLSRNAEGTGIGLSLVRMFVNA 433

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG +S++S +   +T    +P
Sbjct: 434 MGGEISVTSEENIGSTFTVTLP 455


>gi|256004828|ref|ZP_05429803.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255991278|gb|EEU01385.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316940734|gb|ADU74768.1| histidine kinase [Clostridium thermocellum DSM 1313]
          Length = 501

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 163/382 (42%), Gaps = 17/382 (4%)

Query: 420 TVQVDLETKYNTLVKV----QGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRL 474
           + +  L  +Y  +++       E  + +   +     P   I   N   +   K     +
Sbjct: 79  SGRKLLAERYYQILRRKYNCLYEIFNSIELPIVSISYPSFNIIGINNKAKKDVKLLRKCV 138

Query: 475 SPGTHIR---NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           +    ++   NI    S+ Y+  +   L   +   F      L       +   + Y ++
Sbjct: 139 AFVREVKKGNNILNALSKVYSCRNQKYLAEML---FTKSPVYLPNVEIDNNGRKIYYKLM 195

Query: 532 --PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             P+ N++  +    +      +    E+ + +      K+ F+  +++E ++PL  I  
Sbjct: 196 HQPILNSRNKIVGFLIIPIDITQE--IEQKKYIENLARFKDEFLYGITHEFKTPLVVISS 253

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
               ++      L  +  +Y+  I  ++   + LVN++LD+A ++AG +K+    + +  
Sbjct: 254 ALQAIEALCRDELTDRVKKYLNRIKQNTFRQIRLVNNLLDIARIEAGHIKIFKRNLDIVA 313

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L   + +S++       +++   S+        D ++  +I   +LSNA+ F+ K  +V 
Sbjct: 314 LTRLITESVSMFADLKGVQLLFYSNIDKKIIAIDEEKYERIMLNLLSNAIKFTPKDRSVY 373

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           ++ +   G     VK++G  IP+D  K++F RF  V ++      G G+GLS+V  F+N 
Sbjct: 374 VEVSAKEGCVEIKVKDSGIGIPKDKIKTIFERFGQVDSSLSRNAEGTGIGLSLVRMFVNA 433

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG +S++S +   +T    +P
Sbjct: 434 MGGEISVTSEENIGSTFTVTLP 455


>gi|99082681|ref|YP_614835.1| hypothetical protein TM1040_2841 [Ruegeria sp. TM1040]
 gi|99038961|gb|ABF65573.1| sensor histidine kinase protein [Ruegeria sp. TM1040]
          Length = 516

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 87/534 (16%), Positives = 193/534 (36%), Gaps = 52/534 (9%)

Query: 22  CKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNC 81
             +  F  +  + + +    +  +  +       +E    +++      +  ++   ++ 
Sbjct: 5   MSVEWFILVT-LCIASAAVAVWFLNPKAEAKGMEHEL--LIAD-----GRTDAVFLFDDQ 56

Query: 82  LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIK-----LSKATEKLRK 136
             I W               R  +     D     +W K    +      L ++   LR 
Sbjct: 57  TLIAWSSG-----------ARKFLDDNAEDF----SWGKLRDKLSRSYPGLPQSPGFLRD 101

Query: 137 EGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK 196
            G    L          + + R +       I  +  I    A + +        ++  +
Sbjct: 102 VG---SLTLSGTA----EADNREA---HCEWIDGVTRIQLRRAASDIGHVGDDQELTTLR 151

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
                  + VW +     + W N++Y +         QK  G         +   + +  
Sbjct: 152 AAVHQAPYPVWLQSDDARVTWTNLAYDRL-------NQKIRGRGND-TSAPLFPNLDAPM 203

Query: 257 ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEIL 312
              +    ++   E      Y +       G    A+DV+     EI   + +    +  
Sbjct: 204 NSGRAERISIELPETDKKLWYNVSTTETEAGWLCHAMDVNAVVDAEIAQRNFVQTLAKTF 263

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             L++ +AIFD+NR L   N   ++L  +  +FL++ P+     + LR    +PE  N+ 
Sbjct: 264 AQLSIGLAIFDRNRQLVLFNPVLIDLTALPASFLSSRPNMMSFFDRLRDQRMMPEPKNYS 323

Query: 373 TWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
           +W+  +  + +++    +++TW LP+G    V    +P G   ++FE++T ++ L  ++ 
Sbjct: 324 SWRHQMADLLEAAAEGRYQETWSLPSGSVYSVSGRPHPDGAIAFLFEDITAEITLTRQFR 383

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
           + +++    +DH+ +  AVFG DG +  SN A+ ++WKT+ +       I +   T    
Sbjct: 384 SELELGQSILDHIDDAFAVFGADGSMVYSNTAYHTMWKTDPDASFAKITITDACRTWQEL 443

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
              +  W      +     +R      +++ +   L   +  L N   M+ F  
Sbjct: 444 SGPTPTWGEVRDFVAGGTSDRSDWWSRVDMRNGEQLLCRVQSLQNGSVMVRFQQ 497


>gi|189462413|ref|ZP_03011198.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
 gi|189430851|gb|EDU99835.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
          Length = 1466

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 111/236 (47%), Gaps = 4/236 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L  K    ++  +IK  F  ++S+ELR+PLT I G  + L  +K  ++  K  + +  I 
Sbjct: 925  LKHKVSIEQEISDIKLRFFTNISHELRTPLTLITGPVEQLLNNK--TIEDKAREQLLIIE 982

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +    MK++     L   + ++ ++     +E +I + + + 
Sbjct: 983  RNANRMLRLVNQILDFRKIQNKKMKMHVQQFDLLPFIRQIMENFNYLANEQHINLSLNAP 1042

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   AD  +L +I   ++SNA  ++ K   +I+K   +      S+ + G  + ++ 
Sbjct: 1043 EHPVILWADIDKLEKIIFNLISNAFKYTPKEKNIIVKVTENEKIISISIIDQGIGMTKNQ 1102

Query: 735  CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             K +F RF   S+ H   +   G+GLS+ +  + +H G +++ S     +     +
Sbjct: 1103 LKRLFIRFETFSDQHIHTQESTGIGLSLTKELVEMHNGTITVESQPNEGSCFTVNL 1158


>gi|148975728|ref|ZP_01812559.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
 gi|145964801|gb|EDK30053.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
          Length = 839

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 123/251 (49%), Gaps = 10/251 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +  + +  + L E  E    A++ K++F+ ++S+E+R+PL  IIG  ++L  SK   L+ 
Sbjct: 323 MERNYQHNQELVEAKEDAVSANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSK---LSP 379

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + +  I +SS  LL L+NDILDL+ +++G + L+     L + + +    I +K   
Sbjct: 380 NQQEVLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAIS 439

Query: 665 NNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDF 719
            +I + V  D +       D  R+ Q+ + +LSNA+ F+S G+     A        G  
Sbjct: 440 KDIELDVNIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFTSNGTITTDIAYTPMSMGRGKL 499

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  I  +  +S+F  F        R   G GLGL+I    ++L GG+++  S 
Sbjct: 500 ECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSV 559

Query: 778 DEGVTTINCRI 788
               +T    +
Sbjct: 560 KGEGSTFTFCL 570


>gi|296532186|ref|ZP_06894941.1| possible PAS/PAC sensor hybrid histidine kinase [Roseomonas
           cervicalis ATCC 49957]
 gi|296267488|gb|EFH13358.1| possible PAS/PAC sensor hybrid histidine kinase [Roseomonas
           cervicalis ATCC 49957]
          Length = 835

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 151/368 (41%), Gaps = 37/368 (10%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +   +           +DH  + + +   + RI L+N A    ++     L  G  IR++
Sbjct: 229 EANRRLAEERGRLQSILDHARDPILLVDGEERIDLANAAAAEQFRLPPAEL-IGLRIRSL 287

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                       G+ L    + +   +  +    L + S +             T+    
Sbjct: 288 VP----------GYGLRQGEVQARRADGTAFPAELSVGSTAA----------GATVCILR 327

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +V++  R               D +K+ FV  VS+ELR+PLT+I     L+     G+L 
Sbjct: 328 DVSERHRL--------------DALKSEFVSTVSHELRTPLTSIRASLGLVMGGVAGALP 373

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
               + +   + ++  L+ LVNDILD+  +++G +      +    LL +   + A    
Sbjct: 374 EPVRELLGIAAKNAERLVLLVNDILDIEKIESGRLDFQRERVSARALLQQAVAANAAYGA 433

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  +R  +    +     AD QR+ Q+ + +LSNA  FS +G  V +    D G+  F V
Sbjct: 434 QFEVRFALDEGPEDALVYADVQRIQQVLANLLSNAAKFSPRGGVVEVSLGVDAGNAFFRV 493

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  IP +    +F RF         Q+ G GLGLSI ++ +  H G +    ++ G 
Sbjct: 494 RDHGRGIPPEFRSRIFQRFAQADASDARQKGGTGLGLSISKAIVEHHAGSIGFEEAEGGG 553

Query: 782 TTINCRIP 789
           T     +P
Sbjct: 554 TVFCFALP 561


>gi|255011940|ref|ZP_05284066.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313149776|ref|ZP_07811969.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138543|gb|EFR55903.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 736

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 105/518 (20%), Positives = 201/518 (38%), Gaps = 40/518 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-------IDLAFLA 347
                 +N +   T  IL NL V I I+ +   L   N     ++        I  A + 
Sbjct: 38  AQARNAMNLEKLRTDTILGNLPVGIEIYSKEGILVGINDCACRIFGVVDRQEVIGAASIR 97

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS- 406
            NP   E L+      +  E  ++       FSV + +  +K T     G  +  I +  
Sbjct: 98  ENPVIPEELKEAFEQQEEVEAESYYD-----FSVVRQTGFYKTT----CGTAMKRISSKG 148

Query: 407 ----NPRGGT---IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
               +P G     +++  ++T + + E +    +++  + I      +  +  D R  L 
Sbjct: 149 APIFDPDGAMQNYVFIMNDITREHEQELQLKENIQLARQAIQAAD--LVHWRYDNRTHLF 206

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
                 L   ++N L                        +   +   F DE      +  
Sbjct: 207 TSHNEPLTHYDDNLLVSPADYTQAIHPDDLECIRRYIRMMEEGV--DFVDETSVRMKSDY 264

Query: 520 LLSDSVLEYSIIPLPNAQTMLT------FVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                    +  P    +T           NVT + +  + L++  E   ++D++K++F+
Sbjct: 265 DDDWQDCVVNATPFLRDETGKVVLYTGFRRNVTPTKKLLKELSDAKERAEESDKLKSAFL 324

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL  IIGF+ LL  +       +  +Y + I++++ +LL LVND+LDL+ +
Sbjct: 325 ANISHEIRTPLNAIIGFSSLLMNT---DRKEEMDEYKQIITSNTDLLLRLVNDVLDLSKI 381

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           ++G + +  +   L     E+  SI   +    +++   +  K    + D  RL Q+   
Sbjct: 382 ESGTIDVKLAEFDLAIYFEELCNSIRPLVVRPEVKLVCDNPYKRFMVLLDNNRLAQVMLN 441

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
             +NA+  + +G T+ +    +     F V + G  I E     ++ RF       Q  G
Sbjct: 442 YATNAIKCTRQG-TIHVGYRCEGEGIRFYVSDTGIGISEANKSRLYQRFEKLNEFAQ--G 498

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL I +      GG V   S +   +T    +P +
Sbjct: 499 TGLGLVICKVVTEASGGQVGFESEEGVGSTFWSWVPCE 536


>gi|312890080|ref|ZP_07749624.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311297612|gb|EFQ74737.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 352

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 117/245 (47%), Gaps = 5/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     +    + E L+K ++ +  F+ +VS+E ++PL  I G+ + L+      +  KQ
Sbjct: 94  DVKEWAKQKKSEIEDLKKQEQFRRDFLSNVSHEFKTPLFAIQGYIEALQDDMDDPVMVKQ 153

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++E  S +   L  LV D+ +++ +++G + +NY    +NDL+ EV +S+  K  ++ 
Sbjct: 154 --FLEKASKNVDRLSYLVKDLDEISKLESGEIPINYVKFKINDLIKEVMESLEMKAVQHK 211

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I++           V ADR+++ Q+   ++ N+  +  +     ++    +   +  V +
Sbjct: 212 IKLSYKDKYDEPILVTADREKIRQVLVNLIDNSFKYGKENGNTSIRLYDLHDQVLVEVTD 271

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I E     +F RF        R   G GLGL+IV+  I  H   +++ S++   +T
Sbjct: 272 DGIGIEEKYLPRLFERFFRTDSSRSRQIGGSGLGLAIVKHIIESHQQTINVRSTEGLGST 331

Query: 784 INCRI 788
               +
Sbjct: 332 FGFTL 336


>gi|294498882|ref|YP_003562582.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294348819|gb|ADE69148.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 459

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 118/240 (49%), Gaps = 4/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +   +  + L K + ++  F+  VS+E++SPLT+I GF+  LK   +     K+ QY+  
Sbjct: 215 KNFNQMTKELNKIETMRQEFIASVSHEIQSPLTSIRGFSAALKDDIVS--EDKKIQYLTI 272

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   ST L  L +++L LA++D+    L      L++ +  V  ++  +  + NI I + 
Sbjct: 273 IEKESTRLSQLSSNLLKLASLDSEHQTLTLQQYRLDEQIRHVVMALEPQWTKKNIEIDL- 331

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D       AD+  L Q++  +++NA+ ++ +   V +   + N +    +K+NG  I E
Sbjct: 332 -DLSNVQMEADKDLLEQVWLNLVTNAIKYTPENGLVKISIHQKNEEIDVKIKDNGIGIAE 390

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  K +F  F         +G GLGL+I +  + LH G + + S  E  +     +P ++
Sbjct: 391 EDQKYIFESFYKVDKSRTLKGSGLGLAITKKIVRLHEGAIRVESKKEQGSIFTVTLPIQK 450


>gi|242824735|ref|XP_002488317.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218713238|gb|EED12663.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2232

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 128/271 (47%), Gaps = 12/271 (4%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             ++I +     +        +  AE       +   +A   K++F+ ++S++LR+P+  I
Sbjct: 1789 VTMIEVQKRALVQARQAEEMARIAEAEAIHNIKLKEEAANAKSTFLANISHDLRTPMNGI 1848

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            IG ++LL+ +   +L+  Q +Y+E I   +  LL L+NDILD + ++ G MKL+  ++ L
Sbjct: 1849 IGLSELLRET---NLSKDQGEYMESIRICADTLLALINDILDFSKLEVGKMKLSIVSMNL 1905

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKG 705
             D ++EV Q++     +N +      D      V   D  RL QI   +LSN+  F+  G
Sbjct: 1906 KDTISEVVQALFHANRDNKLETVENLDQIPPDLVVLGDPVRLHQIIMNLLSNSYKFTPNG 1965

Query: 706  ST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
            S  +  K  R          SV + G  I ++    +F  F            G GLGLS
Sbjct: 1966 SVSISGKVTRAGKRRIRLECSVSDTGIGISDEQKSRLFKPFSQADSSTARSYGGSGLGLS 2025

Query: 760  IVESFIN-LHGGHVSISSSDEGVTTINCRIP 789
            I ++ I  + GG +S+ S+    TT+   IP
Sbjct: 2026 ICKAIIEDVLGGTISLESTLGVGTTVTFHIP 2056


>gi|162456089|ref|YP_001618456.1| hypothetical protein sce7807 [Sorangium cellulosum 'So ce 56']
 gi|161166671|emb|CAN97976.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1444

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 18/264 (6%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              +  RA  +L EK   L +  + K+ F+ ++S+ELR+PL +++    +L  ++  +L  
Sbjct: 1026 NREIARASASLEEKARELSRTSKYKSEFLANMSHELRTPLNSLLILARILADNEEHTLTP 1085

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            KQ +Y + I+A+   LL L+N+ILDL+ ++AG + +    ++L++L   V++S      +
Sbjct: 1086 KQVEYAKTIAAAGQDLLQLINEILDLSKIEAGKIDVKTQRVLLSELAEYVERSFRQIAEQ 1145

Query: 665  NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--- 720
              +   V ++ G     + D QRL QI   +LSNA  F+S G  + L+    +       
Sbjct: 1146 KELEFWVRVATGVPAGIMTDLQRLQQILKNLLSNAFKFTSSG-RISLEIEVASKGLTFKR 1204

Query: 721  -----------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
                       F+V + G  IP +    +F+ F            G GLGL+I     +L
Sbjct: 1205 ETLIKAKTVLAFAVTDTGIGIPTEKQTLIFDAFQQADASTSRTYGGTGLGLTISRELASL 1264

Query: 768  HGGHVSISSSDEGVTTINCRIPSK 791
             GG +S++S+    +     +P++
Sbjct: 1265 LGGEISLNSTPGLGSKFTLYLPAE 1288


>gi|258623760|ref|ZP_05718718.1| sensor histidine kinase [Vibrio mimicus VM603]
 gi|258583957|gb|EEW08748.1| sensor histidine kinase [Vibrio mimicus VM603]
          Length = 1145

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 173/421 (41%), Gaps = 36/421 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLEL 520
             +  L++     +  G  I ++    ++      G          +  E+  S   +   
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPENHVRRRVYHLEQGTSHTSSRVR 715

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
                V+E    P+P    +++F ++T    AE++L   NE L +                
Sbjct: 716  ADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKIANETLEERVLQRTLELEKLNKQL 775

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                       + K+ F+  VS++L  PL     F   L      +   K + ++E    
Sbjct: 776  VTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESALG 835

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++   
Sbjct: 836  AAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV--P 890

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  +D + L ++    L+NA  ++ +G  V+L   R  G     V +NG  I +D  
Sbjct: 891  SSLWVHSDPKLLRRVIQNFLTNAFRYNPQG-KVVLGVRRVAGQVRIDVWDNGIGIEQDKQ 949

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI----PSK 791
            + +F  F         +G+GLGL+I +   ++ G  +S+ S     +  +  +    PS+
Sbjct: 950  QEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPRQGSVFSLTLERAEPSQ 1009

Query: 792  E 792
            +
Sbjct: 1010 Q 1010



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPENHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKIANETLEE 759


>gi|317499096|ref|ZP_07957375.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893616|gb|EFV15819.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 762

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 135/282 (47%), Gaps = 13/282 (4%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++G + +L  S  E   I   N   + T    T+  +A+RA  +  E    A + K+ F+
Sbjct: 317 IKGIVTVLRKSQSEAIEIERENNTRLETIN--TELTQAKRAAEQAFEVSNNASQSKSDFL 374

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  I+G T L++         K  +YV+ I  S+  LL ++ND+LD++ +
Sbjct: 375 ASMSHDIRTPMNAIMGITSLIRHDAGNK--DKVIEYVDKIDVSAQHLLGIINDVLDMSKI 432

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           +AG    +YS   + + + E++     +  E +  + +  +  +  +V +D   L+QIFS
Sbjct: 433 EAGKTVFSYSDFSILEFMQEIQTMFCPQTEEKHQSLVIHHENIVHEWVNSDYVHLMQIFS 492

Query: 693 KILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +LSNA+ ++ KG  +                + F+V +NG  + ED    +F+ F    
Sbjct: 493 NLLSNAVKYTQKGGKIQFLVEECETKSSAYAKYHFAVIDNGVGMSEDFKDKIFDTFTREE 552

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
                + +G GLG++I ++ I   GG + + S     +    
Sbjct: 553 SSLTNKIQGTGLGMAITKNLIEAMGGTIDVDSELGLGSCFEV 594


>gi|170748787|ref|YP_001755047.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655309|gb|ACB24364.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 793

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 102/502 (20%), Positives = 191/502 (38%), Gaps = 61/502 (12%)

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKL-PEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           W   +  L       E L F      + P+  +  +    + +  ++   H       +G
Sbjct: 260 WSDSMYTLLGYRRQHEYLSFGDVNGLVHPDDGDLYSLARGLAAN-QTHVDHAFRMRGADG 318

Query: 398 QTLHVIVTS-----NPRGG--TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
             + +   +        GG   + +  +++ Q  LE           + ++ +SE   ++
Sbjct: 319 AYVWLRARAEVVADAADGGRHLVGIANDISEQRALEETNAAADMRLRDAVEAISEAFVLW 378

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS----RYYNESDGWDLFAAIITS 506
               R+ L N  FR L          G    ++         R  +   G  L      +
Sbjct: 379 DTGNRLVLCNSKFRHLHALSPEDAQAGRSYTDVMGRGVLPQVRRESPEAGMALTGMAART 438

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-AERALTEKNEALRKA 565
           F+ E         L     L+ S     +   +    ++T   R  E+ L  + E +   
Sbjct: 439 FEAE---------LSDGRWLQISERRTKDGGYVSVGTDITSLKRNQEQLLASERELIETV 489

Query: 566 DEIKNS----------------------------------FVQHVSYELRSPLTNIIGFT 591
            ++K S                                  F+ ++S+ELR+PL  IIGF 
Sbjct: 490 KDLKRSRRTLELQTQQLADLAERYLDQKAAAEAANQAKAEFLANMSHELRTPLNAIIGFA 549

Query: 592 DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           D+++ + LG L   + ++Y   I  S + LL++++DILD+A ++A  ++L+   I     
Sbjct: 550 DVMENAVLGPLGTPRYTEYCRDIRESGSHLLSMIDDILDMARLEARRVRLSPRAISAETA 609

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++     +     E  I + V     L   +AD Q + QI + ++ NA+ F+  G  V +
Sbjct: 610 VSAALAPVEAAAREKAITVSVDVVPGL-ELLADPQAIGQILANLVQNAVKFTPAGGRVAV 668

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
           +  R        +++NG  IP      +   F     +  R  +G GLGL+I  S + LH
Sbjct: 669 RGRRAGACTHLYIEDNGIGIPRTDLARLGRPFTQVERQMTRCHKGSGLGLAITRSMVELH 728

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + I S +   T +  R+P+
Sbjct: 729 GGSLRIRSEETVGTIVLVRLPA 750


>gi|53714664|ref|YP_100656.1| hypothetical protein BF3378 [Bacteroides fragilis YCH46]
 gi|52217529|dbj|BAD50122.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 626

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 206/518 (39%), Gaps = 45/518 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL--QFHNRSFVELWEIDLAFLATNPSN 352
            S +      L   ++IL NL   I + D        + N+       I           
Sbjct: 125 ASADDDYRRFL---FDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVGFSDV 181

Query: 353 DELLE-FLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           D   E   +   K+ E L            Y  +     DT  + +      I++S   G
Sbjct: 182 DIFGEERGKQYRKIDEDLVRAGIPYKAEERYVTADGKVHDTLVMKS------IISSGKLG 235

Query: 411 GTIWMFE-NLTVQVDLETKYNTLVKV-------QGETIDHLSEGVAVFGPDGRIKLSNPA 462
             + +    +T     E +     +        Q   +  +  G+     +  +      
Sbjct: 236 KWLLVARWEITQLKMYERELLAAKEQLEGAVCKQKLALRSIDFGLIYIDRNYLV-----Q 290

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           +      +            +    +    +  G   F   I +    R      +  + 
Sbjct: 291 WEETGNIKNLVSGRHYTPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRH-----ITHVD 345

Query: 523 DSVLEYSIIPLPNA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               E +  P+ +         +L F ++T+ ++ ER L E  E   +++ +K++F+ ++
Sbjct: 346 HVDFEITATPVYDDTGNEIIGGLLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANM 405

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  IIGF+DL+  +       ++ +Y+  +++++ +LL L++DILDL+ ++AG
Sbjct: 406 SHEIRTPLNAIIGFSDLICQTDDV---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAG 462

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M  +Y+   +N+L+ ++   +  K     ++I             DR RL Q+   +++
Sbjct: 463 TMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMN 522

Query: 697 NAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           NAM F+S+GS + L  +  R   +  F VK+ G  IP D    VF RFV        +G 
Sbjct: 523 NAMKFTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF--VKGT 579

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I    I   GG + + + +   +    R+P +E
Sbjct: 580 GLGLAICRVIIERLGGTIGVETREGKGSCFWFRLPVRE 617


>gi|332800441|ref|YP_004461940.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332698176|gb|AEE92633.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 701

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 187/496 (37%), Gaps = 47/496 (9%)

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           EI+  ++ A+ + D +  + F N +  +L       L   P +            +    
Sbjct: 238 EIIATMSDALILLDTDYKIAFANNAAYDLLGYSPYELQDKPFD-----------LITAPA 286

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQ 422
              +    + +       H+      +G+ + V + ++          G +    ++   
Sbjct: 287 ADGSIISKLLAESDDVNNHEMYLKAKSGENIPVWILASAVKDKFGEPTGIVINARDVREH 346

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE-----NRLSPG 477
             +E       +     ++H   G+ +   D +I  +N  F ++            ++  
Sbjct: 347 KKIEQDLRESEEKYRSLVEHALIGIGI-HQDNKIVYANEKFATMLGYTAKDVVGRWIADI 405

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            H  + +    R      G          F  E  S      L+S+ +++Y+     N  
Sbjct: 406 IHPEDRSFILERVERRQSGSSEPDTYEIRFLREDSSF--FYALISNVLIDYN----GNTA 459

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+   V++TD        T+    L + ++   SF   VS++LR+PL +I GF+  L   
Sbjct: 460 TLFNIVDITD--------TKSRIELEQINKELESFSYTVSHDLRAPLRSIKGFSQALLED 511

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+S    Y++ I  ++  +   ++D+L L+ +  G  +L  S++ L+++  E+   
Sbjct: 512 YEDMLDSDGINYLQRIYTAAKRMEGFIDDLLKLSRL--GRAQLCMSSVNLSEICREIAAE 569

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AAR 714
           +     +  ++I++  D    +   D+  L  +   +L NA  F+ K     ++      
Sbjct: 570 LKDLEPQRRVQIEIAKD---ITVYGDQSLLQVVIQNLLQNAWKFTGKNPNAKIEFGIMHS 626

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           ++G   F V++NG          +F  F       +  G G+GL+ V   I  HGG +  
Sbjct: 627 EDGPIYF-VRDNGIGFDMSYADKLFKPFQRLHTEAEFAGTGIGLATVYKIIQRHGGKIWA 685

Query: 775 SSSDEGVTTINCRIPS 790
            S +   TT    +P 
Sbjct: 686 ESHENKGTTFYFTLPL 701


>gi|328957345|ref|YP_004374731.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673669|gb|AEB29715.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 583

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 158/371 (42%), Gaps = 36/371 (9%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               ++    +  +S GV  +  D  + +SNP         +  L        +  T   
Sbjct: 235 RQEKELLENIVTSISTGVLYYNQDKTLLMSNP-------LGDEYLQHLYRSDQVMKTIIP 287

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              E     +          E+ S +  +    D     ++IPL +           +SV
Sbjct: 288 EVLEYRIDSVIKF------PEKVSYENNI---DDYYYNITLIPLFDE--------NLESV 330

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R      +     ++ D ++N F+ ++S+ELR+PL  I G+++ +    +     ++ + 
Sbjct: 331 RGVLVSIQDITKEKRLDIMRNDFINNISHELRTPLVMIQGYSEAILDD-VAETQEEKKEM 389

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I   S  +  +VN++LD + ++AG + L    + L+D  N++    AT   +NNI +
Sbjct: 390 AKIIGEESIRMNRMVNEMLDSSRMEAGFINLIKLDVQLDDFFNKLFTRFATMSEKNNIEM 449

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFS----SKGSTVILKAARDN--GDFIFSV 723
           K+  D  L S+  D  ++ Q+F  +++NA+  +     +   V +    +    + +  V
Sbjct: 450 KLTIDPNLDSYYMDEDKMNQVFVNLINNAIRHTSLSNKENKKVEIWVHLEKIMDEILIEV 509

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ-----RRGVGLGLSIVESFINLHGGHVSISSSD 778
           ++NG+ I E+    VF+RF             + G G+GLSIV++ I  HGG V + S  
Sbjct: 510 RDNGTGISEEDVPYVFDRFYKADKSRTVMKGNKTGTGIGLSIVKNIIEAHGGFVEVKSVI 569

Query: 779 EGVTTINCRIP 789
              TT    +P
Sbjct: 570 NEHTTFVVHLP 580


>gi|238758178|ref|ZP_04619357.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
           ATCC 35236]
 gi|238703508|gb|EEP96046.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
           ATCC 35236]
          Length = 937

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 294 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 350

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 351 QRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVVILLAHTAHEKGLELTLHV 410

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    V D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G 
Sbjct: 411 NNDVPEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGI 470

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S  +  +T   
Sbjct: 471 GISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRF 530

Query: 787 RI 788
            I
Sbjct: 531 YI 532


>gi|229155590|ref|ZP_04283698.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342]
 gi|228627908|gb|EEK84627.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342]
          Length = 438

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   +E + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 200 ELGELAHSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 258

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 259 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQ 318

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A +  G  +  VK+ 
Sbjct: 319 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVIEVKDE 376

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 377 GMGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 434

Query: 787 RIPS 790
           ++P 
Sbjct: 435 KLPL 438


>gi|229101411|ref|ZP_04232154.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
 gi|228681987|gb|EEL36121.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
          Length = 428

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 112/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +     +++      L      ++ F+  VS+ELR+PLT + G+ D+    K  
Sbjct: 172 TTTRNDEIGELAQSIQTLANDLHYMKTERSEFLASVSHELRTPLTYVRGYADIAL--KDS 229

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 230 TPPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNA 289

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E +I++       L     D QR  Q+   IL+NA   S + S + +    +     
Sbjct: 290 MYKERHIKVSFTCPPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISVTEEYKHIS 348

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +++++G  IP +    +F+RF            G GLGLSIV+  + LHGG++++ S  
Sbjct: 349 ITIEDDGEGIPPEDLPHIFDRFYRVDKARTRSTGGTGLGLSIVKEIVELHGGNITVISEV 408

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 409 DHGSCFTISLPS 420


>gi|226326092|ref|ZP_03801610.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758]
 gi|225205634|gb|EEG87988.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758]
          Length = 394

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E  R+A E K  F+ ++S+++R+P+  IIGF+DLL   K      K  +Y+  I
Sbjct: 2   ELKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLL--GKNLDNEEKVREYLGKI 59

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S  IL+ +++ +L++A +++G   L      L++L   V   + + +    I   + +
Sbjct: 60  KSSGNILMTIIDQVLEVARIESGTSILKTEAANLSELFYSVNTVLESDIQMKGIHCSIDT 119

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGS 728
           + +      D+ +L +I+  I+SNA+ ++  G  + +     N       ++F  ++ G 
Sbjct: 120 NVQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCEDTGI 179

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  +    +F+ F       + +  G GLGLSIV+SF+ L  G + + S     T    
Sbjct: 180 GMASEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESKPGKGTKFTV 239

Query: 787 RIPSK 791
            IP +
Sbjct: 240 EIPLE 244


>gi|298375623|ref|ZP_06985580.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268123|gb|EFI09779.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 364

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 129/237 (54%), Gaps = 7/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ E+     K++ +K+SF+ ++S+E+R PL  I+GF+ LL   + G L   + +Y+  
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++ +LL +VND+LDLA +++G M  ++    L  L+ E   S   K+    + +   
Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVP-RGVALTYP 242

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +        +DR RL Q+    ++NA+ ++S GS +IL       + + SV + G  + E
Sbjct: 243 ASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGS-IILSYQAMENEVLLSVTDTGEGMSE 301

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   VF+RF     R Q++G+GLGLSI ++ I   GG + +SS     +   C +P
Sbjct: 302 EIKLHVFDRFYKG--RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|257792818|ref|YP_003183424.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257476715|gb|ACV57035.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 554

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 173/384 (45%), Gaps = 34/384 (8%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           E    +  ++    + +  +   +F PD   ++  +P    L       +    +IR ++
Sbjct: 33  ELAIESREQLFSMLVRNADDIYVMFSPDAYEVEYVSPNVEKLLGVSVEAVK--NNIRALS 90

Query: 485 ATCSRYYNESDGWDL-----------FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            + +   ++    D+           F   I +   ER+  Q TL   S   ++  ++ L
Sbjct: 91  DSAADPSSDPRIDDIASLEEGECLQVFRERIQARTGERRWYQETLYRESIKGVDKYVLVL 150

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +            S+  E+AL    +  R ++E K+ F+ ++S+++R+P+  I+G T +
Sbjct: 151 SD-----RTNEQKGSLMLEQAL----DIARSSNEAKSQFLANMSHDIRTPINAIVGMTKI 201

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            + S  G  + K +  ++ I+ASS  LL L+ND+LD++ +++G M+L      ++D++  
Sbjct: 202 ARES--GEASEKIAGCLDAITASSRHLLELINDVLDMSRIESGQMELQERRFDIDDVVGG 259

Query: 654 VKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V+  I  +    +  +++     K  +F  D  R+ QI   + SNA+ ++ +G ++ L  
Sbjct: 260 VEAIIRPQAQAKSQELRIDRSKMKHKAFSGDELRISQILLNLASNAVKYTQEGGSIALVV 319

Query: 713 ARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESF 764
                         F++ +NG  +  +  + +F+ F  +      + +G GLG+SI ++ 
Sbjct: 320 QELAKTRPSYASVAFTITDNGMGMSPEFVERIFDPFERSEEVSIARIQGTGLGMSITKAL 379

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           I+  GG V + S     ++    +
Sbjct: 380 IDAMGGIVEVDSEKGRGSSFRVTL 403


>gi|171689430|ref|XP_001909655.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944677|emb|CAP70788.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2424

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 18/241 (7%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              +A + K+ F+ +VS+ELR+PL  +IG ++LL+ S    LN +Q +  + I  S+ +LL
Sbjct: 1936 AEEATKAKSIFLANVSHELRTPLNGVIGNSELLRDS---GLNREQMEMADSIRVSADLLL 1992

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI----ATKMHENNIRIKVISDGKL 677
             ++NDILD + ++A  MKL        +++ EV +++      K  + N++I    +   
Sbjct: 1993 TVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIVQDINLPP 2052

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPE 732
                 D  RL Q+   ++ N++ F+  GS + + A  D          F VK+ G  I +
Sbjct: 2053 MLIYGDPIRLHQVLGNLIGNSLKFTEDGS-ITIGARIDEETPDKATLTFWVKDTGIGISQ 2111

Query: 733  DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTT--INCR 787
               +++F  F         +  G GLGLSI +S I  +  G + + S +   TT      
Sbjct: 2112 QHLENLFQPFSQADASTARKYGGSGLGLSICKSLIETMMEGTIQLESEENVGTTAWFTVT 2171

Query: 788  I 788
             
Sbjct: 2172 F 2172


>gi|182419937|ref|ZP_02951173.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|237665846|ref|ZP_04525834.1| sensory box histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376188|gb|EDT73773.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|237658793|gb|EEP56345.1| sensory box histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 691

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 119/665 (17%), Positives = 262/665 (39%), Gaps = 93/665 (13%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR---------KLFK 245
            K L D++ + VW +   G   + N +Y   T   G+  +  IG++          +LF 
Sbjct: 16  LKDLIDNIPYTVWIKGSDGIYKYVNKAYADVT---GVKPEDIIGKNDYEIRDKETSELFL 72

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV------LNSFGEAGIAIDVSKEI 299
           +E ++ +      E+      + +       +++ R+       N     GI  D++   
Sbjct: 73  DEDREILSD----ERTVLNRKTPVNMEYKIFFEVSRMIINSNNPNLKLIGGIGRDITINE 128

Query: 300 TVNDQLTH-TYEILHN--------LT---------VAIAIF--DQNRY-----LQFHN-- 332
           T+  ++   T  +L N        L            I +F  D+ +      L+ +N  
Sbjct: 129 TLYKEIEKSTLTLLDNKNIDNKSELPCILKNTLKANGITVFILDEEKKKMNIFLKTYNND 188

Query: 333 ---RSF-VELWE--IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
               +F V++ +   D    A         E+++++ K   +     +++ +  +     
Sbjct: 189 VISTNFSVDITQEYKDKCIKAQKDKKYLEGEYIKNSKKYYLRTYVIEFEDELIGLLNIHY 248

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSE 445
             K+T+ +       VI+ +  R G I     LT +  +E  K     K     +D+  +
Sbjct: 249 DCKETFPI---IQEDVIINTCNRLGVIIKNRILTNKYKVELYKRKESEKKLQLFLDNAID 305

Query: 446 GVAVFGPDGRIKLSNP----AFRSLWKTEENRLSPGTHIRNIAATCS-----RYYNESDG 496
              V     +    N                 ++    I ++          R Y  +  
Sbjct: 306 -FCVISNTKQFYFENESSKKRLEKFLGYSIEEINSKNGIESLRHLDDDKKIKRMYEAAKV 364

Query: 497 WDLFAAIITSF---DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            +    I+  +   D+E +S+   +  +++           + +  LT  ++T  ++ E+
Sbjct: 365 CNKIEGIVIRYLCKDNEYRSVMWNIRYIAE-----------DDKFFLTGKDITYRLKLEK 413

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-----SKQSQ 608
               + E   + + +K  F  ++S+E ++PL  I+    +L    +   N         +
Sbjct: 414 E-KNELEKTIEIESLKTDFFANMSHEFKTPLNIILTTVQVLYDKLIVQDNNIDNLQMIKK 472

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I  +S  LL +VN+I+D+  +D+GI  L      +  ++ ++  S++  + +N   
Sbjct: 473 YLKGIKQNSYRLLKIVNNIMDITKIDSGIYNLELGNYNIISIVEDIVISLSGYLKQNKRN 532

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNN 726
           I   +  +      D  ++ +I   +LSNA+ ++++   + +    D G  + I +VKN+
Sbjct: 533 IIFDTMEEEVILACDPMKIERIMLNLLSNALKYTNENGNIDVIIDIDKGSNEVIINVKND 592

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+  + +F RF  + +    +  G G+GL +V+  +  HGG + + +S+E  T  
Sbjct: 593 GDRISENDKERIFERFTQSQNLFTRKAEGTGIGLFLVKLLVEQHGGRIYVDTSEEIGTKF 652

Query: 785 NCRIP 789
              +P
Sbjct: 653 VFTLP 657


>gi|292487219|ref|YP_003530091.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
 gi|292900406|ref|YP_003539775.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291200254|emb|CBJ47382.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552638|emb|CBA19683.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
          Length = 909

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   +LNS Q  Y+  I
Sbjct: 278 ELDMAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTTLNSTQRDYLHTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +  
Sbjct: 335 ERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARDNGDFIFSVKNNGS 728
              +  + + D  R+ QI   +L NA+ F+  G+  + ++    + +  +    + + G 
Sbjct: 395 QSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|258510064|ref|YP_003183498.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476790|gb|ACV57109.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 370

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 114/237 (48%), Gaps = 4/237 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E  E L + ++++  FV +VS+E+++PLT+I+GF   LK+  L     ++  Y++ I A
Sbjct: 135 REMAEGLERIEQMRQEFVANVSHEMQTPLTSILGFVKALKSDGLS--EGERRHYLDIIEA 192

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  L  L +++L L ++++G   +  +   L+  L EV  +      E  + + +  + 
Sbjct: 193 ESERLSRLADNLLKLTSLESGHHPVTLTRFRLDRQLREVAIACEPLWTEKGLFLDMQVEP 252

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D   L Q++  +LSNA+ F+  G  + ++  ++      SV + G  I  +  
Sbjct: 253 --VELEGDEDLLGQVWMNLLSNAIKFTEPGGRIQVRLEKEETGVCVSVADTGIGIRPEDV 310

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             VF RF        + G GLGL+I +  + +H G +S+ S     +T    +P  +
Sbjct: 311 SRVFTRFFKADRSRGKPGNGLGLAIAKRIVEMHRGDISVESEPGRGSTFKVHLPYTQ 367


>gi|293365511|ref|ZP_06612220.1| sensor histidine kinase [Streptococcus oralis ATCC 35037]
 gi|307703469|ref|ZP_07640411.1| two-component sensor histidine kinase [Streptococcus oralis ATCC
           35037]
 gi|315613221|ref|ZP_07888131.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296]
 gi|291315879|gb|EFE56323.1| sensor histidine kinase [Streptococcus oralis ATCC 35037]
 gi|307622876|gb|EFO01871.1| two-component sensor histidine kinase [Streptococcus oralis ATCC
           35037]
 gi|315314783|gb|EFU62825.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296]
          Length = 449

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 144/380 (37%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   I     D +      L L     + ++++   
Sbjct: 135 LNKSILELL-----KIEDEYELRDLITQIPELTIDSQDVNGEYLSLR----VRFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L   +     +++     +  ++ +V D+L L+ +D    +L+   I     +  +
Sbjct: 235 DEGAL--YDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNTTSQLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   ++  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+K+ G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|325927603|ref|ZP_08188833.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
 gi|325542037|gb|EGD13549.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
          Length = 1181

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 9/255 (3%)

Query: 541  TFVNVTDSVRAERALTEKNEALRKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                     + E  LT++ + L +     K+ F+  + +E+R+P+T ++G ++LL  +  
Sbjct: 785  WAWRKRVRRQQEWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLAT-- 842

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
              LN+KQ  YV+ I  + T LL LVND LDLA ++AG ++L         L  E+   + 
Sbjct: 843  -PLNAKQRGYVDAIRKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELAHFMH 901

Query: 660  TKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   +R++  +        V D  R+ QI   +L NA+ F+ +G  V L  ++    
Sbjct: 902  PIADARGLRLEYRNQLPPHVVVVGDATRVRQILINLLGNAIKFAERGE-VSLTVSQHGDA 960

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              F V++ G  I  +  K +F RF          +  G GLGL+I +       G + + 
Sbjct: 961  LRFKVRDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVR 1020

Query: 776  SSDEGVTTINCRIPS 790
            S     T     +P 
Sbjct: 1021 SRLGVGTQFTVDLPL 1035


>gi|16127084|ref|NP_421648.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235881|ref|YP_002518318.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424464|gb|AAK24816.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220965054|gb|ACL96410.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 653

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 106/495 (21%), Positives = 181/495 (36%), Gaps = 22/495 (4%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           T   E         A+FD        N  + ELW      LA   + + LL    +A + 
Sbjct: 14  TALQEAFEAAPEGFALFDAEDRCVIWNARYGELWSKWGVTLAVGATFESLLLAGLAAGRF 73

Query: 366 PE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
           PE   +   W  +     K     +       G+ L       P GG I    NLT    
Sbjct: 74  PEANGDRAAWLAHQLGRRKLDRIEEIREEF--GEYLRFESRRTPAGGLITTCANLTNLRR 131

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            E +           +++    + V   D G   L N A  +        L   +     
Sbjct: 132 REAQALAARSFLDTIVENTPAMLFVKDGDTGAFLLVNRAAENQLGVPRAELLGKSDYDFF 191

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA----QTM 539
               +  +   D   + +  + + D+E   L           L+   I +P        +
Sbjct: 192 PKEQADAFAADDRRVIASGKLVTIDEE--PLDTPHN--GRRWLQTRKIAIPGEDGRRHLL 247

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           +   ++T+      AL E  +        K+ F+ ++S+E+R+PL  +IG  ++L  +  
Sbjct: 248 VICEDITERKAGAAALAEALQKAEAGSVAKSEFLANMSHEIRTPLNGVIGMAEVLSRT-- 305

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L+  Q + +E I  S   L  L++DILDL+ ++AG ++L+   + L + +        
Sbjct: 306 -ALDDAQREMMEVILNSGRALNLLLSDILDLSKIEAGGLELSRDPLDLREAITAAVAVFK 364

Query: 660 TKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAAR 714
                  +  ++  +D      + D  R+ QI + + SNA+ F++ GS +I    L A  
Sbjct: 365 AVAESKGLVFRLTFADDFHDHVLGDALRVRQIVANLTSNAVKFTTAGSVIIEARTLVAED 424

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
              D   SV++ G    ED    +F RF        R   G GLGL I      L  G +
Sbjct: 425 GRIDLTVSVQDTGEGFDEDSADRLFERFQQADGSVTRKVGGTGLGLPIARRLARLMDGEI 484

Query: 773 SISSSDEGVTTINCR 787
           S  +      T    
Sbjct: 485 SCVAHPGEGATFVFE 499


>gi|332304964|ref|YP_004432815.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172293|gb|AEE21547.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1058

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +    A  +K+ F+ ++S+E+R+PL  I+GF+  L+       ++ +   +  I+
Sbjct: 431 LDIARKEAVAASNVKSQFLANMSHEIRTPLNAILGFSKELQQ---ADFSADKRDQINIIN 487

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A++  L+ +VND+LD++ ++AG +++N     +N+LL E+   +A   H   +      +
Sbjct: 488 AAADNLMTIVNDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHLKGLEFVYDIE 547

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNG--DFIFSVKNNGSS 729
                 + D  R+ QI + +L NA+ F+  G  + L A+    ++G  +    +++ G  
Sbjct: 548 PLPLKLIGDSYRIRQILNNLLGNALKFTDTGH-IGLSASGKLLEHGIFELNIKIEDTGIG 606

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F           +G GLGL I +  + L  G +S+ SS    +  N  
Sbjct: 607 ISREDKRKLFTAFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLSLQSSPGQGSVFNVT 666


>gi|134299752|ref|YP_001113248.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134052452|gb|ABO50423.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 493

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 5/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L EK   LR+ D+ +  FV  VS+ELR+PLT I G  + L    +   + KQ  ++  I 
Sbjct: 249 LEEKINQLRRIDDTRRDFVAGVSHELRTPLTIIQGNAEALLDGVIEDKD-KQRDFLINIY 307

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L  L N++LD+  ++ G + L    +  +++   V   +     +  I + +   
Sbjct: 308 EESLRLKRLSNELLDMRKIETGQVNLYKEKVNASEIFFNVVSRMQHLAKQRGIILNLSVP 367

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D  RL Q+   ++ NA+ FS   S V ++           + +NG  IPE  
Sbjct: 368 EQPVILYLDTDRLGQVLINLIDNALRFSR--SEVTIELKDFPDKIKVQISDNGPGIPEAE 425

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              V+++F        R   G GLGLSIV+  I LHGG V ++S +   TT    IP ++
Sbjct: 426 RNLVWDKFYKVDKSRSRSAGGTGLGLSIVKQLIELHGGTVCLTSREGEGTTFIFTIPKEQ 485


>gi|95931367|ref|ZP_01314079.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132583|gb|EAT14270.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 704

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 153/385 (39%), Gaps = 41/385 (10%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + + +  +   E            T + +++ + +  P G I+  N A R +  +  + L
Sbjct: 334 LHQEIEERQQAEQDLIANEHEWSITFESITDAITILDPQGNIRKQNLAARRISNSYGSAL 393

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              +  +N+               L    +T   ++    Q   + +++S    +I PL 
Sbjct: 394 KNSSQRKNLVPVA------GAPSPLLEQAVT---EQSAVQQVYHDAVTNSYFRITITPLI 444

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            A  ML  V           L        +++++K+  V  VS+E+R+PLT I+GF + +
Sbjct: 445 YAGEMLGAV----------QLVHDITEQTRSEKLKSETVAAVSHEIRTPLTAIMGFVEFM 494

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + ++  +  +++  Y   I      L  L+ND LDL  + + ++   +  + L ++L + 
Sbjct: 495 QNNETTA--AERRSYFVTIQKEMERLQELMNDFLDLQRLQSSLVPYLFGPVDLEEVLQDT 552

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                     +  ++   S G +     D +RL Q+F  ILSNA+ +S  G TV      
Sbjct: 553 VNLFRMVSEHH--QLVFNSPGNIPKITGDSKRLQQVFKNILSNAVKYSPDGGTVTTSLRI 610

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI----------VESF 764
             G     +K+ G  IP    + +FNRF       +R        I          V+  
Sbjct: 611 SQGHVFVWIKDEGIGIPPQDQEKIFNRFYRVDDSDRR--------IPGGLGLGLTLVQEI 662

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +N H G V + S+    +T    +P
Sbjct: 663 VNAHQGRVWVESALGKGSTFFVELP 687


>gi|330836363|ref|YP_004411004.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta coccoides DSM 17374]
 gi|329748266|gb|AEC01622.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta coccoides DSM 17374]
          Length = 517

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 115/239 (48%), Gaps = 6/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ E   +L + + ++  F+ +VS+E++SPL  I GF  LL   +L     K++ ++  
Sbjct: 278 KSINEMTLSLEQMENMRQEFISNVSHEIQSPLATINGFARLLYNDELSP--EKRNHFLNI 335

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L  L  ++L LA ++   +K       ++  L  +      + +E NI ++  
Sbjct: 336 IETETMRLSRLSENLLKLAALETDSVKFEPKPYRIDKQLRALLLGYEPQWNEKNITMEAS 395

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D    +  AD   + Q++  ++ N++ F+  G ++ ++        I  + + G  I E
Sbjct: 396 LDT--VTLTADEDMMSQVWINLIHNSIKFTPDGGSIQVELHEHGKSVICKISDTGIGIAE 453

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D  K +F RF       +R  +G GLGL+I ++ I +HGG +++ S     TT    +P
Sbjct: 454 DAQKHIFERFYKADKSRERTKKGSGLGLAIAKTIIEMHGGTITVYSKLGAGTTFTVSLP 512


>gi|307825998|ref|ZP_07656212.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307732973|gb|EFO03836.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 619

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/483 (17%), Positives = 186/483 (38%), Gaps = 37/483 (7%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           IL  +T  + + D    + + N++   L       LA +P        +  +  +P   +
Sbjct: 11  ILDTITDGVLVVDSQGVVLYANQAAEIL-------LARSP-------IIGQSLAIPVNPD 56

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
             ++++           +   W       L          G +    ++T +  +E +  
Sbjct: 57  KNSYQDINL-----IRPNGLVWAEMRSSPLEWDGQP----GYVIALRDITERKHMELERQ 107

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             V +     D+  E + +F         N A   L   +       T ++       + 
Sbjct: 108 KFVSLA----DNSMEFIGMFDMKFLPFYINEAGMRLIGLDSLEQCIRTPVQEFFFPEDQR 163

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           +      + F  ++     + +      +  +   + Y++  + ++      +       
Sbjct: 164 F---ILDEFFPRVVREGHADVEIRFRHFKSGAAIWMLYNVFFIKDSAGEPVGIATVSRDI 220

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           + R   +   AL +AD  K+ F+  +++ELR+PL  I     +L   KL   + + S   
Sbjct: 221 SAR--KQAEAALHEADRRKDEFLAMLAHELRNPLAPISNAAHILDMLKLE--DPRLSWAK 276

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I      L +LV+D+LD++ +  G + L    + L +++  V  +    +      + 
Sbjct: 277 EIIKRQVMHLTHLVDDLLDISRIARGKISLKKERLDLVEVIKSVLDTARGPILAKQQHLD 336

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V    +      D  RL Q+   +L NA  +S + + + +       +    V++NG+ I
Sbjct: 337 VHLPEQPILLEGDSVRLSQVLLNLLDNAGKYSLENAQIEVDVQLYGTEVEIQVRDNGTGI 396

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCR 787
              +  ++F+ F   A      + G+G+GL++V+  + LHGG V+ SS   G  +T + R
Sbjct: 397 SAGLLPTIFDLFQQGARTLDRSQGGLGIGLTLVKRLVELHGGKVTASSPGAGLGSTFSIR 456

Query: 788 IPS 790
           +P+
Sbjct: 457 LPT 459


>gi|218676813|ref|YP_002395632.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218325081|emb|CAV26919.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 1010

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A   K++F+  +S+E+R+P+  ++G   LLK + L  L   QS Y + I+ S   LL
Sbjct: 463 AEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPL---QSGYADIINRSGKNLL 519

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ND+LD + ++AG +++  ++  L  ++ +  Q +  +  E  +      +  +  + 
Sbjct: 520 AILNDVLDYSKIEAGHLEIRTASFDLYQMVKDTYQLMEGRAAEKKLNFDFHIESNVQRYW 579

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMCKSV 738
             D  R+ QI + ++ NA+ F+  GS  + +     D    +F V + G  I       +
Sbjct: 580 RGDVTRISQILNNLVGNAIKFTETGSVDIFISLDIEDENRVMFEVSDTGVGIDSKEQACL 639

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+ F    + R +  G GLGL+I +S +    G + + S +   +     +P 
Sbjct: 640 FDAFTQTGSGRNKTGGTGLGLAISKSIMQAMNGDIGVHSEEGEGSQFWFSVPL 692


>gi|221633575|ref|YP_002522801.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
 gi|221157115|gb|ACM06242.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
          Length = 421

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 162/426 (38%), Gaps = 36/426 (8%)

Query: 374 WKENIFSV-YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
           W+ + F    +         H   G     ++ +       ++ ++    ++ E +  + 
Sbjct: 22  WQRHRFGAELRRMLAQLRREHPTIGPLQRPLLDARSLDAFRFLLDDALRFLERELEQASA 81

Query: 433 VKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            + Q   + DHLS+GV +  PDG++   N A R L          G     +    +   
Sbjct: 82  RQSQLAALFDHLSDGVVLVDPDGQVVSLNRAARELLP--------GGRSEALGRPYAEVL 133

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            + +  +L A  +                 +   +E    P  + Q  ++ +   D    
Sbjct: 134 RDYELNELVARALAGAAP-----------TTGRFVELG-RPRRSIQAQVSVLQGADRPLV 181

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L +  E LR+ + I+  FV +VS++LR+PL  +    + L    L    +    ++ 
Sbjct: 182 TLVLRDITE-LRRTETIRRDFVANVSHDLRTPLAALQALVETLLDGALAD-PAVAEDFLR 239

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+     +  LVN +L+L   ++G ++L      L +L     +    +     I + V
Sbjct: 240 RIAVEVEHMTRLVNQLLELTKAESGQLQLARVPTDLAELARATLRRFEPRAASKGIALTV 299

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +L     D +R+ Q+ + +L NA+ F+  G  + ++ A  +G+ I  V++ G  IP
Sbjct: 300 QVAPELPPVACDPERIGQVLANLLDNALKFTPAGGQITVEIAAASGEAIVRVRDTGPGIP 359

Query: 732 EDMCKSVFNRFVSNAHRG------QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            D    VF RF                      +IV+  + LHGG V   S   G   + 
Sbjct: 360 ADELDRVFERFFKGDRARSGGGSGLGL------AIVKHLVQLHGGRVWAESPPGGGAIVG 413

Query: 786 CRIPSK 791
             +P +
Sbjct: 414 FALPLE 419



 Score = 44.9 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 14/195 (7%)

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV 295
           A+   R  F  E++ RM++    E      +      + +S    R L       +  ++
Sbjct: 19  ALFWQRHRFGAELR-RMLAQLRREHPTIGPLQRPLL-DARSLDAFRFLLDDALRFLEREL 76

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +      QL     +  +L+  + + D +  +   NR+  EL     +     P  + L
Sbjct: 77  EQASARQSQLAA---LFDHLSDGVVLVDPDGQVVSLNRAARELLPGGRSEALGRPYAEVL 133

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            ++         +LN    +    +   +    +      + Q    ++    R     +
Sbjct: 134 RDY---------ELNELVARALAGAAPTTGRFVELGRPRRSIQAQVSVLQGADRPLVTLV 184

Query: 416 FENLTVQVDLETKYN 430
             ++T     ET   
Sbjct: 185 LRDITELRRTETIRR 199


>gi|197104499|ref|YP_002129876.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477919|gb|ACG77447.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 833

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 131/339 (38%), Gaps = 11/339 (3%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFAAIITSFDDER 511
           G+I   +P+   L       L     +  +      +  +   D      A  T      
Sbjct: 340 GQITYLSPSVVKLSGFSPEDLVGQQMLEGVHPEDQAAFLHAHMDMLRGRRAPGTPIRYRV 399

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
               G    +  +            + +    NVT+ V  E  L        +A  +K+ 
Sbjct: 400 ACKTGGWVWIEGNPSLVRDERGRPVEFVDVSRNVTERVELEARLAAAVAEAERAATVKSD 459

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S+E+R+PLT+I+GF   L   K   L      Y   ++ +S  LL +VND+LD +
Sbjct: 460 FLANMSHEIRTPLTSILGFASFLDELK---LPEPAGGYAAKVTTASRTLLAIVNDVLDFS 516

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++AG +++        +   +V      +     + + +       + + D  RL Q+ 
Sbjct: 517 KLEAGRLEMKPRPTDPAECARDVLDLFGPQAQAKGLELVLEPAAPAVAMI-DADRLRQVL 575

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             ++ NA+ F+  GS V L  A D  +   +  V + G  I     + +F RF       
Sbjct: 576 MNLVGNAVKFTQSGS-VRLSCAYDPAERRLTCKVADTGPGIGAAAMEKLFQRFSQVDGST 634

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            R   G GLGL+I +  +   GG + + S+    +T   
Sbjct: 635 TRAHGGTGLGLAISKGLVEAMGGRIGVESAPGRGSTFWF 673


>gi|144901017|emb|CAM77881.1| sensor protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 906

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 142/326 (43%), Gaps = 10/326 (3%)

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             +     G  +  +    S   + ++     A    S      S+     +  D V+E 
Sbjct: 581 FTQWAEHRGIDLDTLTEADSELVDMAETLLAGAIGAASARVMVASVSKGEVVGLDEVMEI 640

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
               L  A  ++ +    ++  AE  L   NE L + D +K+ F+  V++ELR+PLT+I 
Sbjct: 641 ----LDEASQVIAYSQRLEAATAE--LKAANERLTELDRMKDDFISTVTHELRTPLTSIR 694

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            F+++L  +  G   +++ +++  I   S  L  L+N +LD+A +++G M  ++  +   
Sbjct: 695 SFSEILFDNP-GIDEAQRLEFLAIIIKESERLTRLINQVLDMAKMESGRMTWHFVMVEPR 753

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-ST 707
            L+ +   +      +  + ++      L     D  + +Q+   +LSNA+ F   G   
Sbjct: 754 QLIQDSIAATGALFEDRRVTLETRLADDLPPLRTDADKFMQVVINLLSNAVKFVEAGQGR 813

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           V L  A         V +NG  +P +  ++VF++F         + +G GLGL+I  + +
Sbjct: 814 VRLTLAATANGIRVEVADNGPGLPANALEAVFDKFHQVGDTLTNKPKGTGLGLAISRTIV 873

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
              GG + + S +    T    +P++
Sbjct: 874 EHLGGRIWVDSIEGQGATFTFDLPNQ 899


>gi|315186291|gb|EFU20052.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 466

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 155/386 (40%), Gaps = 39/386 (10%)

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           +  G T    ++LT +  L              + H+ EG+ V     RI  +NP    +
Sbjct: 116 HTLGQTHTRLQDLTAESHL----------YHTVLTHMEEGIVVTDGRLRITYANPRALEI 165

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                          +      ++   +   +     ++S      +L  T    S   +
Sbjct: 166 LPLPP---------EHRLKPLPQFLRSTSLLEHIHRTLSSGIPLTHTL--TTPPPSSRTI 214

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
              +IPLP +      +  +D  R ER            ++I+  FV  VS+EL++P+T 
Sbjct: 215 RLHLIPLPPSPAERLLLVASDITRLERL-----------EQIRRDFVSSVSHELKTPITT 263

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++G+ + LK        + +++++E   + +  L  ++ D+L L+ ++     +      
Sbjct: 264 VLGYLETLKDLPPDD-EATRTRFLETALSHTHRLHQIIEDLLLLSRIEQAEAPVPLERAP 322

Query: 647 LNDLLNEVKQSI-ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
           L  L+    + +  T+   + + ++   D  L     +   ++Q    ++ NA+  +  G
Sbjct: 323 LAPLIRRAMELLRQTRGETHPLTLEGPEDLALPL---NPGLMVQALYNLIHNAVTHTPPG 379

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVES 763
           + V+++        +  V++ G  IP +    +F RF        R   G GLGLSIV+ 
Sbjct: 380 TPVVVRWRGTGSSVLIQVEDRGPGIPPEALPRIFERFYRVDASRARSTGGTGLGLSIVKH 439

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +  H G VS++S+    TT   R+P
Sbjct: 440 IVQAHRGEVSVASTPGEGTTFTIRLP 465



 Score = 44.5 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 20/140 (14%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++   +  +    + +L ++   I + D    + + N   +E+  +             L
Sbjct: 123 TRLQDLTAESHLYHTVLTHMEEGIVVTDGRLRITYANPRALEILPLPPE-----HRLKPL 177

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVT---SNPRG 410
            +FLRS + L          E+I     S     H  T   P+ +T+ + +     +P  
Sbjct: 178 PQFLRSTSLL----------EHIHRTLSSGIPLTHTLTTPPPSSRTIRLHLIPLPPSPAE 227

Query: 411 GTIWMFENLTVQVDLETKYN 430
             + +  ++T    LE    
Sbjct: 228 RLLLVASDITRLERLEQIRR 247


>gi|237748106|ref|ZP_04578586.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379468|gb|EEO29559.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 1068

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/760 (15%), Positives = 258/760 (33%), Gaps = 87/760 (11%)

Query: 99  LHQRIDIPQTDTDLLSFENWLKFHHYIKLS---KATEKLRKEGQSFDLVAETQNDCAIKI 155
           + Q + +         + +W        +     +  K+ + GQ F  V    +      
Sbjct: 47  MLQLLGLDDHPAAEECYSHWFSRIDAKAMDYVETSVAKMLETGQ-FSEVQYLWHHPKWGN 105

Query: 156 EGRVSGSCAFLR-------------ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSL 202
                G   + R             I  L  +  E  +   +  ++    + +  LF+S+
Sbjct: 106 IHIRCGGKVYRREGSEIELRGYHQNISELAQLKEENLQKKQRLIEVEKEKNRYNSLFESV 165

Query: 203 DFLV--WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK 260
              +  +   + G++++ N ++ +     G   ++        F       +++     +
Sbjct: 166 MCGIVQYRLVENGNVVFKNANH-EAIRIFGYEPEEFWNRKEWHFPS-----LVAPEDWTQ 219

Query: 261 NFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHT-----Y 309
            F E     E G+   ++   +          G A + +DV  E                
Sbjct: 220 VFGEVSGLKEVGDKAHFEYRLLKKDGTPCWIIGCAEVILDVDGETVFQSVFLDIDDSKKA 279

Query: 310 EILHN-LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK-LP- 366
           EI    L   +   ++   +   +    E +      L   P   + L   ++  + +P 
Sbjct: 280 EIERAMLAEQVQASNELLRISLEHTRTSEFYYYPEERLLVVPERAQRLYHCKARYENMPV 339

Query: 367 ---EQLNWKTWKENIFSVYKSSETHKDTWHLP---NGQTLHVIVT----SNPRGG---TI 413
              E       ++++  +Y+       T        G  + V  T    +   G     +
Sbjct: 340 SFVEDFVDPVSRDSVMKMYERIHRGGKTSSCELKIKGSDVWVRTTLSTVTVKDGKPVFVV 399

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            + E++T + ++E +   L  +    +++  + ++V   +  +      F     T    
Sbjct: 400 GVAEDITREKNIELENIQLHAIYDYIMNNDYDLMSVGDVERNVYTM--RFSDDVDTRGMP 457

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-- 531
           LS      ++      +  +    D  + I   F+  R  +    E  + S    S    
Sbjct: 458 LSG-----DLFEGNRLFIEKFVYPDDRSRIEEEFNIRRMKVNLDREGGNYSFYYRSTDNP 512

Query: 532 PLPNAQTMLTFVNVTDS---------------VRAERALTEKNEALRKADEIKNSFVQHV 576
           P      +  F    D                 R  + LT+      KA+  K+ F+  +
Sbjct: 513 PRYKEGKVSYFNGFHDRLLLTVRDIHEMRLKEERVRQTLTDALMVAEKANNAKSDFLSKM 572

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+++R+P+  IIG    +   K      +  +Y   I+ +S  LL L+ND+LD++ +D+G
Sbjct: 573 SHDMRTPMNGIIGLA--MIAEKYRHDPDRMKEYFSKITVASHHLLGLINDVLDMSKIDSG 630

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            + L      L  LL +V   +   +      +++     +      D+ RL Q+F  IL
Sbjct: 631 KIVLVSERFNLVSLLKDVVDIVMPDLKSRQHAVRMSVASDVHERVEGDQLRLQQVFMNIL 690

Query: 696 SNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           SNA+ F+  G  + +  +         G +     ++G  + ++  K +F  F    +  
Sbjct: 691 SNAVKFTPAGGHIGIDVSESPSTFAGYGCYRLVFSDDGIGMSKEYLKKIFVPFEREDNSM 750

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +  G GLG+ I ++ + +  G   + S     +T    
Sbjct: 751 TSKISGTGLGMPISKAIVEMMNGSFDVESERGVGSTFTIT 790


>gi|332141805|ref|YP_004427543.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551827|gb|AEA98545.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1351

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 138/343 (40%), Gaps = 21/343 (6%)

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            G   L   A +   +  EN L    H+  +      ++  +    L   +I      R  
Sbjct: 723  GTYTLLVRAMKPNGEWGENHLFVNLHVATVP--WKTWWAYTLYCALLIGVIILVVYLRTR 780

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            L  T        +        +A                  L    E   +A ++K+ F+
Sbjct: 781  LHQTEITKQKRFV--------HALEQQVSEKTASLEAQAHNLKNALEKAEEATKLKSEFL 832

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             ++S+E+R+P+  +IG  DLLK S    L  +Q Q V   S+S++ LL L+NDILD + +
Sbjct: 833  ANMSHEIRTPMNGVIGMLDLLKKS---DLTVEQGQRVNIASSSASSLLVLINDILDFSKI 889

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFS 692
            +A  +++      L  L+  + QSIA       + + V           +D  R+ QI +
Sbjct: 890  EANKLEIESVDFDLRSLIETLAQSIAHTAQLKGLAVIVDVSKVDASKVNSDPTRIQQILT 949

Query: 693  KILSNAMDFSSKGSTVILKA---ARDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAH 747
             +LSNA+ F+ +G   I  A   +++ G ++    VK+ G  I       +F  F     
Sbjct: 950  NLLSNAVKFTEQGELSITAALLPSKNEGQYVLRCAVKDTGIGIEPRKLAQLFEAFTQVDA 1009

Query: 748  RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               RR  G GLGLSI +    L GG V  SS     +      
Sbjct: 1010 STTRRYGGTGLGLSITKKLCELLGGDVKASSEVGKGSCFEVIF 1052


>gi|163735013|ref|ZP_02142450.1| two-component hybrid sensor and regulator, putative [Roseobacter
           litoralis Och 149]
 gi|161391795|gb|EDQ16127.1| two-component hybrid sensor and regulator, putative [Roseobacter
           litoralis Och 149]
          Length = 1116

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT      V    R +  L +  E    A+  K  ++  +S+ELR+PL +I GF  +L+ 
Sbjct: 634 QTERLLFEVRAHERTDLELQQAKEKAEAANLAKTRYMTGLSHELRTPLNSIYGFAQILER 693

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   + +++   +  I  SS  L  L+  +LD++ ++AG +K++   I L   L +V  
Sbjct: 694 DE--DMPARRRNSIITIRRSSEHLAGLIEGLLDISRIEAGRLKISRDRINLRVFLQQVSS 751

Query: 657 SIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                  E N+R ++ +   L  ++  D +RL QI   +LSNA+ ++  G  V ++    
Sbjct: 752 IFEEAAREKNLRFRMETSRVLPVWITFDEKRLRQIIINLLSNAIRYTDNGE-VSMRIKYR 810

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           N   +  V + G  I E+    ++  F   +   Q +G GLGL+I +  + + GG + + 
Sbjct: 811 NEVAVIEVSDTGCGIREEDRARIWEPFERGSG-TQAQGSGLGLTITKLLVEILGGDIELE 869

Query: 776 SSDEGVTTINCR--IPS 790
           S++   +    R  +P+
Sbjct: 870 STEGKGSLFRVRVMLPA 886


>gi|314933668|ref|ZP_07841033.1| sensor protein SrrB [Staphylococcus caprae C87]
 gi|313653818|gb|EFS17575.1| sensor protein SrrB [Staphylococcus caprae C87]
          Length = 588

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 151/368 (41%), Gaps = 42/368 (11%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAA 485
             ++   ++   ++ + EGV        +  SN     +    ++    S    I     
Sbjct: 249 ALSSSKSIRDSLLNSMVEGVLGINDQRVVIFSNKMADDIIHFIDDFSKESIEQQIEKTFE 308

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           +    + E +    +   ITS+ +  +     G + ++ D   E+++             
Sbjct: 309 SKGTEFLEIEISTRYYVFITSYINRIQPNGRSGIVVIIRDMTNEHNL------------- 355

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                                 D++K  F+ +VS+ELR+P++ + G+T+ +    +   +
Sbjct: 356 ----------------------DQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPD 393

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    +  +   S  L  LVN++L++A +DA  + +      + +LL+++K     +  
Sbjct: 394 -EIRDSLGVVLDESKRLNRLVNELLNVARMDAEGLSVEKEVQPIKNLLDKMKAKYRMQAD 452

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  + ++  S      +  D  R+ Q+ + ++ NA  ++  G T+ + A++D    I  +
Sbjct: 453 DLGLTMEFNSGNDHLLWDYDMDRMDQVLTNLIDNASRYTQPGDTIAVTASKDEQYNILYI 512

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G+ I  +  + VF+RF       +R   G GLGL I +  I  HGG + + S     
Sbjct: 513 SDTGTGIAPEHLQQVFDRFYKVDASRKRGKQGTGLGLFICKMIIEEHGGQIDVKSELGKG 572

Query: 782 TTINCRIP 789
           TT   ++P
Sbjct: 573 TTFIIKLP 580


>gi|302037583|ref|YP_003797905.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605647|emb|CBK41980.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 490

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 8/261 (3%)

Query: 536 AQTMLTFVNVTDSVRAERAL----TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            Q          + R  R L          L++ D+IK+ F+ HVS+ELR+P+ +I   T
Sbjct: 221 GQGNFRATMDGQAPRELRELGDTVKWMGTRLQQLDDIKSEFLAHVSHELRTPMASIQEGT 280

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL     G L   Q   +  +S SS  L+ L++ ILDL+ +++G+M+  ++   L  + 
Sbjct: 281 HLLLDEIPGPLTQDQRTTLRIMSDSSRRLMYLISTILDLSKMESGMMEYRFAPTDLRRVA 340

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL- 710
           +     I        +R+ V +  +     AD  R+ Q+   +LSNA+ +S +G+ V L 
Sbjct: 341 DISVNKIRLLADAKQVRLLVEAPVERHWVRADSARIEQVLDNLLSNALKYSPEGAAVTLH 400

Query: 711 -KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
            +  RD G     V + G  IP +    +F RF     + +    G GLGL++ +  +  
Sbjct: 401 MEPRRDEGLMFVDVTDCGPGIPTEEVPHIFERFYQGRTKTRHVSVGSGLGLALAKKVVEA 460

Query: 768 HGGHVSISSSDEGVTTINCRI 788
           HGG + + S     TT+   +
Sbjct: 461 HGGRIWVDSEVGKGTTVRFML 481


>gi|171780120|ref|ZP_02921024.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281468|gb|EDT46903.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 450

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 141/385 (36%), Gaps = 30/385 (7%)

Query: 416 FENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L  +     K      + ++++GV      G I + N   +      E   
Sbjct: 75  LNDLSTVFRLAQENLAQEKNRLASILSYMTDGVLATDRSGNITMINQTAQKQLNL-EREE 133

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           + G +I +I    S Y       DL +       + R      + L     + +++    
Sbjct: 134 ALGMNIVDILGDDSDY----SYHDLVSKTPEIVLNRRDETGEFITLR----IRFALNRRD 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+            D  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLIAVLHDTTEQEKE-----------DCERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +++D+L+L+ +D   ++L          +  +
Sbjct: 235 DEGALKEDIAP--SFIKVSLDETNRIIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSI 292

Query: 655 KQSI-----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                       +      I      K      D  ++ Q+   IL+NA+ +S  G  + 
Sbjct: 293 LNRFDQIKSQHTVAGKQYEIVRDYPIKSIWVEIDPDKMTQVLDNILNNAIKYSPDGGKIT 352

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +         I S+ + G  IP+     +F+RF          + G GLGL+I +  +  
Sbjct: 353 VSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQ 412

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           H G +   S+    +T    +P ++
Sbjct: 413 HKGFIWAQSTYGKGSTFTIVLPYEK 437


>gi|153006633|ref|YP_001380958.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030206|gb|ABS27974.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 725

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 122/246 (49%), Gaps = 5/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +   A R   +       A+  K+ F+  +S+ELR+PL  I+G++ LL+ +  G    + 
Sbjct: 305 ELAHALRREQDARAHAESANRAKDEFLATLSHELRTPLNAILGWSGLLRDA--GGDPERL 362

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ +  I  +   L  LV+D+LD++ + AG +++ ++ + L  ++++  +++        
Sbjct: 363 ARGLAVIDRNGRTLAQLVSDLLDMSRIAAGRIEVEHADVDLLAVVDDAIEAVRAAARAKG 422

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + I   +  +L   V D  RL Q+   ++SNA+ F+  G +V ++  R+ G  +  VK+ 
Sbjct: 423 VAISRSAGPELPRVVGDAGRLRQVAWNLVSNAVKFTPPGGSVDVRLGREGGAAVLEVKDT 482

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783
           G  +  D    +F+ FV        +  G+GLGL+I +  + LHGG +   S      +T
Sbjct: 483 GVGMSRDFLPIMFDPFVQAEGSSVRRHGGLGLGLAITKQLVALHGGTIHAESDGPGRGST 542

Query: 784 INCRIP 789
               +P
Sbjct: 543 FRVLVP 548


>gi|118474424|ref|YP_892424.1| sensor histidine kinase/response regulator [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413650|gb|ABK82070.1| sensor histidine kinase/response regulator [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 1016

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 123/248 (49%), Gaps = 12/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   +T + +A   A+  K++F+ ++S+E+R+PL  IIGFTDLLK S   +L  ++ + 
Sbjct: 368 KALELITTQKQAAIDANRSKSAFLANISHEIRTPLNGIIGFTDLLKNS---NLKKQEKEL 424

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  SS  LL ++N+ILD++ +++  ++L+          +   +  + K +E +I  
Sbjct: 425 VGVIEQSSENLLRIINNILDISKIESRKVELDNEVFSPIKEFSSAVELYSQKAYEKDIEF 484

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFS 722
               D  L      D  ++ Q+   ++ NA+ F+ +   +I+   + + +        FS
Sbjct: 485 ICYIDPSLNKHLEGDYFKVKQVLINLIGNAIKFTPQNGQIIVDITKLDENEDGKTTIKFS 544

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+NG  I ++M + +F+ F+           G GLGLSI   +I +    + + S    
Sbjct: 545 VKDNGIGIDKNMLEKIFDSFIQANKDITKIYGGTGLGLSISNEYIKMMDSIIKVKSELGE 604

Query: 781 VTTINCRI 788
            +  +  I
Sbjct: 605 GSEFSFVI 612


>gi|109900450|ref|YP_663705.1| histidine kinase [Pseudoalteromonas atlantica T6c]
 gi|109702731|gb|ABG42651.1| histidine kinase [Pseudoalteromonas atlantica T6c]
          Length = 662

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/272 (28%), Positives = 133/272 (48%), Gaps = 11/272 (4%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L    ++Y I    ++      +    + R               +  K+ F+ H+S+EL
Sbjct: 99  LDAGAVDYIIKSELSSSRFARAIRYALARREIEKERVDRLKAEAENRSKDRFLAHLSHEL 158

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT+I+G+T+LL  SK+G   S QS+ +  +  +S  LL+L+N++LDL+ + A  ++L
Sbjct: 159 RTPLTSILGYTELLMDSKIGQ--SAQSE-LSIVLNNSKHLLSLLNNMLDLSKIAADKLEL 215

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
           N S + L+ L+ +V   +     +  + + VISD  L      D  R  Q+   ++SNA+
Sbjct: 216 NLSEVNLDALIADVYALMNIPATDKGLTLSVISDTPLPLKITTDATRFRQVLINLISNAI 275

Query: 700 DFSSKGSTVILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRG 753
            F+ +GS V L+   ++        FSV + G  IP +   SVF  F   A     ++ G
Sbjct: 276 KFTEQGS-VTLRLWCEDKPGCEFLHFSVTDTGIGIPANQLNSVFKPFEQVADVVSRRQGG 334

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            GLGL+I    +   GG VS+ S+    +   
Sbjct: 335 SGLGLAICNELVAKMGGEVSLHSTFGEGSCFT 366


>gi|312962748|ref|ZP_07777237.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
 gi|311283123|gb|EFQ61715.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
          Length = 1206

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 161/388 (41%), Gaps = 12/388 (3%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTEEN 472
           ++   +  +   E   +  +      ID     + V    GR+   N A+   L   +E+
Sbjct: 562 YLRIQIKKRRSAELALSDQLAFSKTLIDGSPIALYVRDKSGRLAHCNRAYLEFLHTRQED 621

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +        I +       +    D    +  +F D    + G L  +    L +    
Sbjct: 622 VMGTPFSDTEIISPTLSLQYQQVYKDNDPNVEPTFADLDIEVNGQLHQIYHWTLPFQNSA 681

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              A  +  ++++++  +    L +  EA   A+E K+ F+  +S+E+R+P++ +IG  +
Sbjct: 682 GEFAGIIGGWLDISERGQLIEQLLQAKEAADDANESKSIFLASMSHEIRTPISALIGLIE 741

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+    G    +  + +     S+  LL+L+ DILDL+ ++AG M  +     L  LL 
Sbjct: 742 MLR--VRGGSPEQIDENLRVAHLSAQSLLSLIGDILDLSKIEAGAMVPSPRPTDLAQLLE 799

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            V +          +   +  D      + D   L QI + ++SNA+ F+ +G  V L  
Sbjct: 800 SVHKLFEVNAQNKGLTFDLQIDAMASLVLIDSLMLNQIIANLISNAIKFTQQG-FVKLSL 858

Query: 713 AR--DN-----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESF 764
            +  D+     G ++  V+++G  + E   K++F  FV  +      R  GLGLSI    
Sbjct: 859 KQLPDDHESGFGRYLIEVQDSGLGLNEQQKKAIFEPFVQVSPNTTGERSTGLGLSICTRL 918

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
             L G  +SI+S+    +       +++
Sbjct: 919 ATLLGARLSINSTPGQGSCFQLEFKAEQ 946



 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 74/224 (33%), Gaps = 27/224 (12%)

Query: 159 VSGSCAFLRILSLDG--IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           ++ + AF+    +    +  ++ +       LS+ ++  K L D     ++ RD++G + 
Sbjct: 546 IAAAVAFILAFLIWNHYLRIQIKKRRSAELALSDQLAFSKTLIDGSPIALYVRDKSGRLA 605

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI----SSSALEKNFCETVSTLEHG 272
             N +Y +   T             ++    +  +       +    +     +    +G
Sbjct: 606 HCNRAYLEFLHTRQEDVMGTPFSDTEIISPTLSLQYQQVYKDNDPNVEPTFADLDIEVNG 665

Query: 273 N-NKSYKIV-----RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
             ++ Y              G  G  +D+S+   + +QL    E   +   + +IF    
Sbjct: 666 QLHQIYHWTLPFQNSAGEFAGIIGGWLDISERGQLIEQLLQAKEAADDANESKSIF---- 721

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
                      L  +         +   L+E LR     PEQ++
Sbjct: 722 -----------LASMSHEIRTPISALIGLIEMLRVRGGSPEQID 754


>gi|293607347|ref|ZP_06689686.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814191|gb|EFF73333.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 939

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 155/382 (40%), Gaps = 25/382 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +TV + +      LV       + L++ V++          N     +       L    
Sbjct: 323 ITVVMRVRYIRRRLVLPALRQYEALADSVSL----------NRKLIEVAPVGLCLLRRSD 372

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN-AQ 537
               ++   +R +    G   +   I S   +    +  L     + L ++       A 
Sbjct: 373 RAVVLSNDMARRW--FQGTPGWRTEILSAQGDEAGREHRLNDGRTAYLSFAPTTYRGEAV 430

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    +++   R E++L +       A++ K  F+  +S+E+R+PL  I+G  +L   +
Sbjct: 431 VLCGISDISALKRIEQSLLQAKRDAEAANQAKTVFLTTMSHEIRTPLYGILGTLELFSLT 490

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           ++     +Q+QY+E I  SS  LL  +ND LDL+ ++AG   L  +     +LLN V  S
Sbjct: 491 RVSG---QQAQYLETIQQSSATLLRTINDTLDLSRIEAGHTVLERAPFSPVELLNNVVAS 547

Query: 658 IATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KA 712
            A + H   +R   ++D     + + D  R+ QI   + +NA+ F+  G  V+       
Sbjct: 548 FAARAHAKGVRSYAVADPDAPPAVIGDATRIRQILDNLANNAIKFTDSGQIVLRLKVNSR 607

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGG 770
            RD+ D  F + + G+ I       +F  +            G GLGLSI  S  ++  G
Sbjct: 608 TRDSVDLCFQIADTGAGIAPKHQARLFEPYYQVDADNCVTLPGTGLGLSICRSLSDMMNG 667

Query: 771 HVSISSSDEGVT--TINCRIPS 790
            ++  S     T  T   R+P 
Sbjct: 668 RLNAVSEPGLGTSITFEIRLPL 689


>gi|317154644|ref|YP_004122692.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944895|gb|ADU63946.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 664

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 147/318 (46%), Gaps = 17/318 (5%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLP---NAQ 537
           IA        ++        +  +F+D R+S++  ++ L  +++ LE     L      +
Sbjct: 192 IAEGNLDIPVDTSPDCELRNLTRAFEDMRESMRHLIKDLQTANAKLEDHRAHLETTVRER 251

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T            A   L        +A+  K+ F+  +S+E+R+P+  ++G  ++L  +
Sbjct: 252 TEELEHKNDSLNTALDELRNATLVAERANLAKSRFLSSMSHEIRTPMNAVLGMAEILGET 311

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L   Q++YV+ I A+   LL +++DI+DL+ ++ G ++L+ +   L++ +++    
Sbjct: 312 E---LTPDQTRYVQIIRAAGESLLAILSDIIDLSRIETGSLRLDETRFTLSETVDKAFAI 368

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           I  +  + ++ +       +      D + L Q+   +L NA+ F+ +G TV L  +R  
Sbjct: 369 IEPRAGQKSLELVCTLAPDVPNRLTGDPKLLTQVLVHLLGNAVKFT-EGGTVRLSVSRAP 427

Query: 717 GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
           G        FSV + G  IP D   ++F+ F    +   R   G GLGL+I +  +++ G
Sbjct: 428 GRDGGVAVQFSVSDTGPGIPADRLGAIFDSFTQANNSTTREHGGAGLGLTISKRIVHMMG 487

Query: 770 GHVSISSSDEGVTTINCR 787
           G +   SS    +T +  
Sbjct: 488 GRIWAESSVGLGSTFHFT 505


>gi|228985104|ref|ZP_04145271.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774591|gb|EEM22990.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 444

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   +E + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 206 ELGELAHSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQ 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A +  G  +  VK+ 
Sbjct: 325 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVIEVKDE 382

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 383 GMGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 440

Query: 787 RIPS 790
           ++P 
Sbjct: 441 KLPL 444


>gi|94500324|ref|ZP_01306857.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94427623|gb|EAT12600.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 896

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 132/273 (48%), Gaps = 11/273 (4%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           + +D+++EY +     A  + T  +++   + E+AL +   A   A  +K  F+  +S+E
Sbjct: 314 IKADAIIEYDVDGNATA-IVGTNQDISAQQQQEQALIDARMAAEHAARVKGDFLASMSHE 372

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  I+G  +LLK ++L +L   Q+Q V    +SS  LL L+NDILD + ++A  + 
Sbjct: 373 IRTPMNGIMGMLELLKNTELTTL---QAQRVNIALSSSKSLLVLINDILDFSKIEADRLI 429

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNA 698
           L      L  LL E+ ++++      NI + +   +        D  R+ QI + ++SNA
Sbjct: 430 LEEIDFNLRSLLGELTEALSQLAESKNIELVLDTVEVHQDMVKGDPSRIRQIITNLISNA 489

Query: 699 MDFSSKGST-VILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           + F+ +G   + +       D     FSVK++G  I +   K +F+ F        R   
Sbjct: 490 IKFTHQGEVLIRVSLQEYSLDQWQVNFSVKDSGIGITQGQQKKLFDAFSQADSSTTREYG 549

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G GLGL+IV+       G + + S     +   
Sbjct: 550 GTGLGLAIVKKLCEAMDGQIRVKSKMNIGSEFY 582


>gi|260775399|ref|ZP_05884296.1| aerobic respiration control sensor protein ArcB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608580|gb|EEX34745.1| aerobic respiration control sensor protein ArcB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 779

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 156/375 (41%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +EN+L   T  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKENQLVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   ++D          +++   +   G       +  E   +P  +     
Sbjct: 202 DVYSKEVAQQIVDTDEKVFADNQALTYEQWLEYPDG-----HKNYFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L+KA   K +F+  +S+ELR+PL  I+G + +L  +++ 
Sbjct: 257 LGLVGFGRDITER--KRHEESLKKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQM- 313

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q  +++ I+ S+  L N+ NDI+D+   D   ++L  S++   + + E++   A 
Sbjct: 314 --TDEQRNHMQTINVSAITLGNIFNDIIDMDKFDRRKLELFPSSLNFEEFVAEMESISAL 371

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L +    D  RL Q+   ++SNAM F+ +G  V  ++A  D   
Sbjct: 372 MASQKGLRFDLERLSDLPTAIDVDATRLRQVLWNLISNAMKFTKEGGVVMTVEAEVDEEY 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    ++++G  IPE     +F  +             G G+GL++ +  I +  G ++
Sbjct: 432 ANITMEIEDSGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLIKMMDGDIT 491

Query: 774 ISSSDEGVTTINCRI 788
           +SS +   +T    I
Sbjct: 492 VSSEEGFGSTFTVTI 506



 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 66/166 (39%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMKDLENEVYQRERTQLELAERTALLRSFIDASPDLIYYRNADG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVS 267
                N + ++ T   G    + +G +   ++ +E+ ++++ +        +    E   
Sbjct: 176 VFSGCNRAMEELT---GKKENQLVGLTPWDVYSKEVAQQIVDTDEKVFADNQALTYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G+   +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGHKNYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLKK 278


>gi|76803907|gb|ABA55850.1| para-aminobenzoate synthase [Vibrio sp. DAT722]
          Length = 567

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 120/243 (49%), Gaps = 8/243 (3%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            ER +    +   +++     FV  +++ELR+PL  ++G  +LL  +    L ++Q QY+
Sbjct: 188 MEREIA-SRKRAEESERATKEFVAMINHELRTPLNGVLGSAELLGRT---DLETEQHQYL 243

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +  S  +L  ++ND+LD + ++AG+M++        +L + +    A K  E  I   
Sbjct: 244 TNLMQSGELLRVIINDLLDFSKMNAGMMEIIRKDFAWPELESSLMGVFAAKAAEKRIHFS 303

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +     + +++  D +R+ QI   ++ NA+ F+  G  V L+    +G   F V++ G  
Sbjct: 304 IDKKLGIPNYLNGDAERITQILVNLVGNAIKFTKLGGVV-LRVEWLDGHLCFDVEDTGIG 362

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP D   ++F+ FV      +R   G GLGL+I ++ + L  G +S  S ++  T     
Sbjct: 363 IPLDAQATLFDPFVQVDRSSKRNFEGSGLGLAITKNLVELMDGEISFVSKEKQGTIFKVS 422

Query: 788 IPS 790
           IP 
Sbjct: 423 IPL 425


>gi|312889094|ref|ZP_07748653.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
 gi|311298404|gb|EFQ75514.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
          Length = 1401

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 137/347 (39%), Gaps = 13/347 (3%)

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            DG  K    A     K     L  G ++  + A+ S     S    L   ++  F +   
Sbjct: 755  DGFDKGWINADNRTRKATYTNLDQGDYVFKVRASNSEDGINSGYISLKIKVLPPFWESTL 814

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNS 571
            +    + L   ++L      +   +            R       ++   +++ D++K  
Sbjct: 815  AYIIYMVLFFGALLLIRQRGIQKIRRQFIAEKEKQEARLLIEQERQEIRRMQELDQLKTK 874

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ +VS+E R+PL+ I+   + + T      + +Q Q +  I  ++  LLNLVN +LD  
Sbjct: 875  FLTNVSHEFRTPLSLIMAPVNKMLTRA----DQEQKQQLNMIRKNARRLLNLVNQLLDFR 930

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
             ++   +KL+     +   + E+ QS      E  I     +         D  ++ +I 
Sbjct: 931  KMEVQELKLHSKPGDIIKFIGEISQSFTDIAEEKEIDFVFDTTVDAMFTSFDHDKIERIL 990

Query: 692  SKILSNAMDFSSKGSTVILKAARD------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
              ++SNA  F+  G  V +    D      +      V + G  IP +    +F RF  +
Sbjct: 991  FNLISNAFKFTPAGGQVSVLLNVDQQTANSDTSLEIKVIDTGIGIPPEKHSKIFERFFQH 1050

Query: 746  A--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                    +G G+GL+I   F+ +HGG +++ S  +  +    ++P 
Sbjct: 1051 DVPESMINQGSGIGLAITREFVKMHGGEITVESEPDHGSCFIIKMPL 1097


>gi|260771832|ref|ZP_05880750.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
 gi|260613124|gb|EEX38325.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
          Length = 1139

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 134/290 (46%), Gaps = 12/290 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ E   I L  +Q +    N+       + + ++N+ L
Sbjct: 413 IHTQRRDEIGRLAVSFERMQRSIRE--KIQLIKSQNIELEDNI-------QLIRKQNDEL 463

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I +S   L N
Sbjct: 464 QLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPISAAHRYQLDIIISSGQRLAN 523

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LD   +  G + +    + L++    V +     + +  +RI      +     A
Sbjct: 524 LVDDLLDYHKMRYGHLDIETQAVNLSNATRMVLELSHHLLGKKTLRIINQIADQPLWVSA 583

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+   ++ NA+ ++S+G  +++ A          V + G  IP +  + +F   
Sbjct: 584 DAQRLEQVLYNLIGNAIKYTSEG-KIVISATPMEHQVRIQVVDTGQGIPAEQLEHIFEPL 642

Query: 743 VSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +         R+G GLGL+I    I L  G + +SS     TT +  +P 
Sbjct: 643 IQAGYDSSRYRQGAGLGLTISRQLIELMQGSLYVSSQPMVGTTFSFTLPL 692


>gi|326798783|ref|YP_004316602.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
 gi|326549547|gb|ADZ77932.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
          Length = 341

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 124/250 (49%), Gaps = 4/250 (1%)

Query: 543 VNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +V + VRA  R    + +AL+  ++ +  F+ ++S+E ++PL  I G+ + ++   +  
Sbjct: 89  NDVHEEVRAWAREKKIEIDALKNQEQFRREFLSNISHEFKTPLFAIQGYLEAVQDGLMYE 148

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +   +++  S +   L  L+ D+ ++A +++G +K+NY    L+ L+ EV +S+  K
Sbjct: 149 DPERAEVFLQKASNNIDRLSYLIKDLDEIAKLESGEIKINYQRFDLSLLVKEVMESLELK 208

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
             +++I +          FV ADR+++ Q+   ++SN++ +  +     +K    +   +
Sbjct: 209 AEKHDIELIFKQKYSYPIFVNADREKIRQVLVNLISNSIKYGKEKGHTYIKTYELHDQVL 268

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             V ++G  I E     +F RF        R   G GLGL+IV+  +  H   +S+ S++
Sbjct: 269 IEVTDDGIGIEEKYLPRLFERFFRTDRSRSRQIGGSGLGLAIVKHILEAHQQTISVRSTE 328

Query: 779 EGVTTINCRI 788
              +T    +
Sbjct: 329 GLGSTFGFTL 338


>gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1351

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 38/284 (13%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               +  +  +  + L+E  +    A   K+ F+  +S+E+R+P+  +IG T LL  + L
Sbjct: 641 QWIGSEIERQQTAQELSEARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPL 700

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             +   Q  +VE I +SS  LL+L+NDILD + +++G + L      L   L E    +A
Sbjct: 701 SLV---QQDFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLA 757

Query: 660 TKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---- 713
           TK    ++ +    D       V D  R+ QI   +LSNA+ F+++G   V + A     
Sbjct: 758 TKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSVSAKPLFS 817

Query: 714 ----------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
                       +     +V + G  IP D    +F  F         Q  G GLGL+I 
Sbjct: 818 DLELTAKSMYSTHYQIEVAVSDTGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAIS 877

Query: 762 ESFINLHGGHVSISS-----------------SDEGVTTINCRI 788
           +    + GG + + S                 +    +T    I
Sbjct: 878 QRLAEMMGGKMWVVSGDAIGGHPPENWQINKDTPTQGSTFYFSI 921


>gi|255015222|ref|ZP_05287348.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 793

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 27/343 (7%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-------- 519
            T    ++   + + +A    +Y  E    +L   +  S D     LQ + E        
Sbjct: 170 GTPVPPIASNDYEKEVAEFHHKYVPEDQRDELTRNL--SLDHVLSILQNSREYVLFCQVM 227

Query: 520 ---LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFV 573
              +  D  L +S         +LT  ++ +    ER    L +  +  + A++ K+ F+
Sbjct: 228 ENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFL 287

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  IIG T +   S       +    ++ I  SS +LLNL+N++LD++ V
Sbjct: 288 SRMSHDIRTPMNAIIGMTTI--ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKV 345

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           ++G + L      + +LL  V   + T + +     +V     K    + D QR+ Q+  
Sbjct: 346 ESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLL 405

Query: 693 KILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +LSNA+ ++     + L+           G F  +V +NG  I  D    VF  F    
Sbjct: 406 NLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEITVIDNGIGIKPDFLHKVFEPFERAE 465

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  +G GLG++I  +  ++  G + + S     +     
Sbjct: 466 DATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFT 508


>gi|253565168|ref|ZP_04842624.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946633|gb|EES87010.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 565

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/514 (21%), Positives = 207/514 (40%), Gaps = 37/514 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL--QFHNRSFVELWEIDLAFLATNPSN 352
            S +      L   ++IL NL   I + D        + N+       I           
Sbjct: 64  ASADDDYRRFL---FDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVGFSDV 120

Query: 353 DELLE-FLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLP----NGQTLHVIVTS 406
           D   E   +   K+ E L            Y  +     DT  +     +G+    ++ +
Sbjct: 121 DIFGEERGKQYRKIDEDLVRAGIPYKAEERYVTADGKVHDTLVMKSIISSGKLGKWLLVA 180

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 + M+E     +  + +    V+ Q   +  +  G+            N   +  
Sbjct: 181 RWEITQLKMYER--ELLAAKEQLEGAVRKQKLALRSIDFGLIYIDR-------NYLVQWE 231

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                  L  G H       C R   +        A   +    +     T     D   
Sbjct: 232 ETGNIKNLVSGRHY-TPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRHITHVDHVD--F 288

Query: 527 EYSIIPLPNA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           E +  P+ +         +L F ++T+ ++ ER L E  E   +++ +K++F+ ++S+E+
Sbjct: 289 EITATPVYDDTGNEIIGGLLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEI 348

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIGF+DL+  +       ++ +Y+  +++++ +LL L++DILDL+ ++AG M  
Sbjct: 349 RTPLNAIIGFSDLICQTDDA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDF 405

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +Y+   +N+L+ ++   +  K     ++I             DR RL Q+   +++NAM 
Sbjct: 406 SYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMK 465

Query: 701 FSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           F+S+GS + L  +  R   +  F VK+ G  IP D    VF RFV        +G GLGL
Sbjct: 466 FTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF--VKGTGLGL 522

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I    I   GG + + + +   +    R+P +E
Sbjct: 523 AICRVIIERLGGTIGVETREGKGSCFWFRLPVRE 556


>gi|254521965|ref|ZP_05134020.1| sensory box sensor histidine kinase/response regulator
           [Stenotrophomonas sp. SKA14]
 gi|219719556|gb|EED38081.1| sensory box sensor histidine kinase/response regulator
           [Stenotrophomonas sp. SKA14]
          Length = 733

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 12/231 (5%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K  F+  +S+E+R+PL  I+   +L+    LG     Q Q +   SASS  LL +V+DI
Sbjct: 76  AKGEFLATMSHEIRTPLNGILPMLELIARGPLG---EDQRQMLATASASSQQLLRIVDDI 132

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQR 686
           LD + ++A  ++L  ++  L DLL+ V Q +        + + +  D  +      D  R
Sbjct: 133 LDYSRLEAQALELEITSFNLRDLLDGVVQLMQRAADAKGLSLTLQLDPAVRLPVRGDPVR 192

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNR 741
           L Q+ S +L+NA+ F+++G  V+L+  R           F + + G  I E +   +F  
Sbjct: 193 LRQVLSNLLANAIKFTARG-QVLLRVQRLGEGAAQHQLRFEIIDTGIGIDEVLQARLFQS 251

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F        R   G GLGL+I +  I+L  G + + S+     T    IP 
Sbjct: 252 FSQADASTTRIYGGTGLGLAICKRIIDLMQGRIGVQSTPGQGATFWFEIPL 302


>gi|42522105|ref|NP_967485.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574636|emb|CAE78478.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 766

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 12/258 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            M     +     A   L +  +    A   K+ F+  +S+E+R+PL  ++G  +LL  +
Sbjct: 346 WMTGKYVIAQDKEALARLQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAELLNET 405

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN +Q + +  + ++   LL+++N+ILD +  ++G M+L     +L+DL+ EV+  
Sbjct: 406 H---LNFEQKELLISLQSAGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQAL 462

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----- 712
           I+T +   N++            V D  RL Q+   +L NA+ F+ +G+ + L       
Sbjct: 463 ISTSVLRKNLQFTFHPPEHDRWIVGDSLRLKQVLMNLLGNAVKFTDRGA-IELTVQPYPG 521

Query: 713 -ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                    F VK+ G  I ++  K VF+ F        RR  G GLGLSI +  + L G
Sbjct: 522 SEPGKETIFFEVKDTGIGIAKENLKKVFDEFGQEDSSVTRRFGGTGLGLSISQKIVQLMG 581

Query: 770 GHVSISSSDEGVTTINCR 787
           G +   S     +  +  
Sbjct: 582 GELYCESRQFVGSRFHFS 599


>gi|254508241|ref|ZP_05120365.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           16]
 gi|219548858|gb|EED25859.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           16]
          Length = 1111

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 132/298 (44%), Gaps = 23/298 (7%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            +  D    +  SF+  ++S++  ++L+                         +     +
Sbjct: 388 MERKDEIGRLAVSFERMQRSIREKIQLI--------------------KQQNEELESNLQ 427

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            + ++N+ L+ A+++K+ F+   S+ELR+PL  ++G  + L +   G + +     ++ I
Sbjct: 428 LIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPITADHKYQLDII 487

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S   L  LV+D+LD   +  G + +  S + L+   + V +  +  +    +RI    
Sbjct: 488 ISSGQRLATLVDDLLDYHKMRYGNLDIETSAVDLSGSTHLVLELSSHLLGNKPLRIINQV 547

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +     AD QRL Q+   ++ NA+ ++++G  +++ A   + +    V + G  IP D
Sbjct: 548 PEEPVWVSADPQRLEQVLYNLIGNAIKYTTEG-KIVISATVVDNNIRVQVVDTGQGIPAD 606

Query: 734 MCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P
Sbjct: 607 QLDHIFEPLIQAGNDASRYRQGAGLGLSISRQLIELMKGSLYVSSQPMVGTTFSFTLP 664


>gi|196231316|ref|ZP_03130175.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224652|gb|EDY19163.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 895

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 134/729 (18%), Positives = 269/729 (36%), Gaps = 113/729 (15%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
             +G V+G    +  +  D    ELAE+ L+  +      +F+++ D +  LV   D  G
Sbjct: 168 DADGAVTG----VVFVFHDVTQRELAESALRASQ-----EMFRLITDHISDLVAVLDLHG 218

Query: 214 DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
             L+A+ S+ +       ++     E       E  +R+ +  A           L   N
Sbjct: 219 RRLYASESHSQFIAPARELYLTPAFEEIHPDDRERLRRLFAEIASTGGSQRAEFRLIGRN 278

Query: 274 NKSYKIVRVLN----SFGEAG----IAIDVSK----EITVNDQLTHTYEILHNLTVAIAI 321
            + + +  VL     + G+A     ++ D+S+    E  V+ ++  +  +++++     +
Sbjct: 279 GQVFCMESVLTLIRSAEGQAEKVLMVSRDMSERQRAEARVHSEMQFSDTLINSMPGIFYL 338

Query: 322 F-DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           +   +R +   N++   +     A +          E L + +  PE+      +  +  
Sbjct: 339 YRGADRKILRWNKNLETVTGYRAAEI----------ETLDALSYFPEEEKPFVHERMLKC 388

Query: 381 VYKSSETHKDTWHLPNGQ--TLHVIVTSNPRGGT---IWMFENLTVQV------------ 423
             + S   +      NG+    +V        G    + +  ++T ++            
Sbjct: 389 FAEGSADIEVNLLAKNGRRTPFYVTGFRIDIDGRPCMLGIGIDITARLAAEGALRATMFR 448

Query: 424 --------------------DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                               +L      + ++  ET+D     +  +            F
Sbjct: 449 LTRQNAVLGEKARNARSLGAELSASLRIITELAAETLDVSRASIWFYNEAQTKICCADLF 508

Query: 464 RSLWKTE-----------ENRLSPGTHIRNIAATCSRYYNESDGWD-------------- 498
                                       R IAA  +     +  +D              
Sbjct: 509 EKDKGQHSSGIELTAADFPIYFKALAEERVIAAGHAPTDPRTGEFDATYLHPLGIHSMLD 568

Query: 499 --------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS-- 548
                   +   I      E +  Q   E  + S+ +   + L   Q       + ++  
Sbjct: 569 APIRGSGKMVGVICHEHTGEPREWQPDEESFAGSMADLVALSLEVEQRRQAETALRETLD 628

Query: 549 ------VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                     R L   NE L++ D +K+ F+  +S+ELR+PL ++IGFT +L+    G +
Sbjct: 629 NLEHKVTERTRDLEAANERLQELDRLKSEFLATMSHELRTPLNSVIGFTGILRQELAGPM 688

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q + +  + +S+  LLNL+ND+LDL+ V++G M+L     V+ DL+ E+ Q +A ++
Sbjct: 689 NDEQKKQLGMVHSSARHLLNLINDLLDLSRVESGKMELFLEDFVVADLVKEIDQCLAPQV 748

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +  +R++   D        DR +  QI   + +NA+ F++ G  V LK   D     F 
Sbjct: 749 QQKKLRLETSLDQPTLRIRTDRNKSFQILLNLTNNAVKFTAVG-RVTLKVTSDADQVQFE 807

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +    +F  F       +R   G GLGL + +    + GG++++ S    
Sbjct: 808 VADTGIGIKPESLPHLFEAFRQVDGSARRVYEGTGLGLYLSKQLAKMLGGNITVESEFGI 867

Query: 781 VTTINCRIP 789
            +     +P
Sbjct: 868 GSRFTLVLP 876



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 84/275 (30%), Gaps = 22/275 (8%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
              + +      +L ++   +   D    + F N    EL           P        
Sbjct: 60  ARTHIREQWLATMLRSIGDGVVATDAAGRVTFMNNIAQELTGWKEGEAEQKPLVKVFQTL 119

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------G 411
            R A +  +       +E       S E         +G    V+  + P         G
Sbjct: 120 DRKARQPTDNPIDLVVREG--RAITSIEPV--LLIARDGAEHIVVSKATPIRDADGAVTG 175

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +++F ++T +   E+      ++     DH+S+ VAV    GR   ++ +         
Sbjct: 176 VVFVFHDVTQRELAESALRASQEMFRLITDHISDLVAVLDLHGRRLYASESHSQFI-APA 234

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L        I               LFA I ++   +R   +          +E  + 
Sbjct: 235 RELYLTPAFEEIHPDDRERLRR-----LFAEIASTGGSQRAEFRLIGRNGQVFCMESVLT 289

Query: 532 PLPNAQ-----TMLTFVNVTDSVRAERALTEKNEA 561
            + +A+      ++   ++++  RAE  +  + + 
Sbjct: 290 LIRSAEGQAEKVLMVSRDMSERQRAEARVHSEMQF 324



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/436 (13%), Positives = 146/436 (33%), Gaps = 46/436 (10%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
           + A + ILS      + A T ++ + L+    + + + D +       D AG + + N  
Sbjct: 43  TTAVVIILSTLRRRRDWARTHIREQWLAT---MLRSIGDGVV----ATDAAGRVTFMNNI 95

Query: 222 YKKNTE-TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-----HGNNK 275
            ++ T   EG   QK + +  +    + ++   +   L       ++++E       +  
Sbjct: 96  AQELTGWKEGEAEQKPLVKVFQTLDRKARQPTDNPIDLVVREGRAITSIEPVLLIARDGA 155

Query: 276 SYKIVRVLNSFGEAGIAI--------DVSKEITVNDQLTHTYEIL----HNLTVAIAIFD 323
            + +V       +A  A+        DV++       L  + E+      +++  +A+ D
Sbjct: 156 EHIVVSKATPIRDADGAVTGVVFVFHDVTQRELAESALRASQEMFRLITDHISDLVAVLD 215

Query: 324 QNRYLQFHNRS-------FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            +    + + S         EL+ +  AF   +P + E L  L +           +   
Sbjct: 216 LHGRRLYASESHSQFIAPARELY-LTPAFEEIHPDDRERLRRLFAE--------IASTGG 266

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
           +  + ++    +   + + +  TL            + +  +++ +   E + ++ ++  
Sbjct: 267 SQRAEFRLIGRNGQVFCMESVLTLIRSAEGQAEK-VLMVSRDMSERQRAEARVHSEMQFS 325

Query: 437 GETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
              I+ +     ++ G D +I   N    ++       +     +         + +E  
Sbjct: 326 DTLINSMPGIFYLYRGADRKILRWNKNLETVTGYRAAEIETLDALSYFPEEEKPFVHERM 385

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
                     S D E   L          V  + I        +   +++T  + AE AL
Sbjct: 386 LKCFAEG---SADIEVNLLAKNGRRTPFYVTGFRIDIDGRPCMLGIGIDITARLAAEGAL 442

Query: 556 TEKNEALRKADEIKNS 571
                 L + + +   
Sbjct: 443 RATMFRLTRQNAVLGE 458



 Score = 38.8 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 12/174 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             + +   L  + D    +    +     +  + +GV      GR+   N   + L   +
Sbjct: 45  AVVIILSTLRRRRDWARTHIR-EQWLATMLRSIGDGVVATDAAGRVTFMNNIAQELTGWK 103

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E   +    +  +  T  R   +     +   ++        S++  L +  D      +
Sbjct: 104 EGE-AEQKPLVKVFQTLDRKARQPTDNPI--DLVVREGRAITSIEPVLLIARDGAEHIVV 160

Query: 531 ---IPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               P+ +A       +  F +VT    AE AL    E  R   +  +  V  +
Sbjct: 161 SKATPIRDADGAVTGVVFVFHDVTQRELAESALRASQEMFRLITDHISDLVAVL 214


>gi|332991785|gb|AEF01840.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas sp. SN2]
          Length = 887

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 154/321 (47%), Gaps = 20/321 (6%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            IR I    +R    S+G ++ +    S +DE  +L     + SD   +  I+ L  A+ 
Sbjct: 311 PIRTITHVFNRL---SEGQNISSIPGNSRNDEIGNLARAAHVFSDKNKQTEIL-LSEARG 366

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +   +S      LTE      +A   K+ F+ ++S+E+R+P+  IIG  +L +   
Sbjct: 367 LNGRLESLNS-----ELTESKIKAERATASKSIFLANMSHEIRTPMNGIIGLIELAQQHP 421

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +  +    S Y++  + SS IL++++NDILD + ++AG +K+   +  L+ L + +   I
Sbjct: 422 VPDI---VSGYLDKAAYSSQILMSVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVI 478

Query: 659 ATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN 716
           A K  E N+ ++ I         + D  R+ QI   I SNA+ F+ +G   +    + ++
Sbjct: 479 ALKAKEKNLVVRFIVSPSIPPQVIGDPLRIAQIIMNIGSNAVKFTEQGQICIRFDGSIND 538

Query: 717 GDFIFS----VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
              + S    ++++G  + E     +FN F        R   G GLGL+IV+   +L GG
Sbjct: 539 KGNLLSLTMNIEDSGIGMSERQLARIFNPFTQADDATNRKYGGTGLGLTIVKQLTDLMGG 598

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            +S +S +   +T    +P +
Sbjct: 599 SLSATSVEGKGSTFTISLPLR 619


>gi|284052131|ref|ZP_06382341.1| periplasmic sensor signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
 gi|291570319|dbj|BAI92591.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 573

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 120/260 (46%), Gaps = 24/260 (9%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +   A   A+  K+ F+ ++S+ELR+PL  IIG++++L               +E 
Sbjct: 307 EELQKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEMLHEESKDLGYDDFLPDLER 366

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  +   LL++++DILD++ ++AG + L      +  L+++V  +      +N   +KV 
Sbjct: 367 IQTAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTEKNQNALKVK 426

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------ 714
           +   LG+  AD  ++ Q+   +LSNA  F+ KG T+ L+  R                  
Sbjct: 427 TAKDLGTMYADLPKVRQVLLNLLSNASKFTDKG-TITLQVQRVTKIPNEWKKDTSNAERF 485

Query: 715 ---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                   +F VK+ G  + ++  + +F  F+       +R  G GLGL+I +    + G
Sbjct: 486 ASAKTQYLVFQVKDTGIGMNQEQVQHIFKAFIQADASTTKRFGGTGLGLAISQRLCEILG 545

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S +   +T    +P
Sbjct: 546 GGIYVKSREGVGSTFVVWLP 565


>gi|224535913|ref|ZP_03676452.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522473|gb|EEF91578.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1344

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 123/273 (45%), Gaps = 8/273 (2%)

Query: 517  TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            T   LS   L + ++     +      ++   +  ER      E   +  ++K  F  ++
Sbjct: 780  TWWALSLFALSFMLVVFGIVRYFWLRKSMQAEILMERL---DKEKQEEISQMKIRFYVNI 836

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+ELR+PLT I+     L +   G    +Q  Y++    ++  LL+LVN ++D    + G
Sbjct: 837  SHELRTPLTLIVAPLQELLSRISGHWEHEQLLYIQ---RNTNRLLHLVNQLMDYRRAELG 893

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            I +L   +      +     +  +   + +I     ++ +    + D   L  I + +LS
Sbjct: 894  IFELRLVSANAYKRVLNSFMNYESLSKKKDIDYNFYTELQDKELLFDENYLDLIVNNLLS 953

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
            NA  ++ +G ++ +K  ++ GD +  V + G  IP++  + +F RF        R G G+
Sbjct: 954  NAFKYTEEGESITVKLYQEAGDLVLQVTDTGIGIPKEKQEKIFERFYQVESG--REGSGI 1011

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLS+V+  + LH G + + S     +T +  +P
Sbjct: 1012 GLSLVQRLVELHHGRIELESEPGKGSTFSIYLP 1044


>gi|323528804|ref|YP_004230956.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385806|gb|ADX57896.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 943

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/512 (17%), Positives = 183/512 (35%), Gaps = 29/512 (5%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           ++           + I+ +  +A    D+   ++    +   ++ +  +           
Sbjct: 287 ARIEDTAKANDDLHNIIASSEIATVFVDKEIRVKRFTPNATAIFNLIDS----------- 335

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS------NPR 409
            +  RS   +   L + T  +++   ++S    +       G+   + +        +  
Sbjct: 336 -DIGRSLFHITHTLRYPTLADDVRQSFQSLRLTEREIQSEAGRWYLMRLLPYRTADDHID 394

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWK 468
           G  I +  ++T + + E       +          +  + +    G I   N     ++ 
Sbjct: 395 GAVITLI-DITDRHEAEEAARAGERRLRLVAQSTKDYAIVIQDSAGTIVSWNAGAERIFG 453

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E  +  G +I  I     R           AA     DDER         +  S +  
Sbjct: 454 YSEGEVV-GQNIELIYEHNDRQALLPAQERDIAAKEGRADDERWHRTKDGRRIFCSGVVT 512

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERA-------LTEKNEALRKADEIKNSFVQHVSYELR 581
            I+            ++T   + E A            E    A+++K+ F+  +S+EL+
Sbjct: 513 PIVDTSFNGFAKILRDLTARKQREDASREALAREQAAREQALSANQLKDEFIAVLSHELK 572

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            PL  I    ++L                  I  +      +++D+LDL+ +  G + L 
Sbjct: 573 HPLNLIGVKAEMLPRLPEVRHLPAVWDAAASIRHAVRSQAQIIDDLLDLSRIQTGKLALE 632

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
            S + L  L+ ++  +     H   + ++V    +    +AD  R  QIF  +LSNAM F
Sbjct: 633 VSRVDLAALIADIADTCEEDAHARGVALQVEVADEPAITLADPVRCEQIFWNLLSNAMKF 692

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           +  G  V ++ +RD       V ++G  I       +F+ F        R G+G+GL++V
Sbjct: 693 TDSGGHVEVRLSRDGRMLRLEVTDSGQGIEPATLPYIFDMFRQTPRGRSRGGLGIGLALV 752

Query: 762 ESFINLHGGHVSISSS-DEGVTTINCRIPSKE 792
              + +HGGHV   S      T +   +P+ E
Sbjct: 753 RQLVEMHGGHVKAESEGPGHGTRMTVWLPAME 784


>gi|265765874|ref|ZP_06093915.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253542|gb|EEZ25007.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 565

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/514 (21%), Positives = 211/514 (41%), Gaps = 37/514 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL--QFHNRSFVELWEIDLAFLATNPSN 352
            S +      L   ++IL NL   I + D        + N+       I           
Sbjct: 64  ASADDDYRRFL---FDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVGFSDV 120

Query: 353 DELLE-FLRSANKLPEQL-----NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
           D   E   +   K+ E L      +K  +  + +  K  +T      + +G+    ++ +
Sbjct: 121 DIFGEERGKQYRKIDEDLVRAGIPYKAEERYVTADGKVHDTLVMKSIISSGKLGKWLLVA 180

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 + M+E     +  + +    V+ Q   +  +  G+            N   +  
Sbjct: 181 RWEITQLKMYER--ELLAAKEQLEGAVRKQKLALRSIDFGLIYIDR-------NYLVQWE 231

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                  L  G H       C R   +        A   +    +     T     D   
Sbjct: 232 ETGNIKNLVSGRHY-TPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRHITHVDHVD--F 288

Query: 527 EYSIIPLPNA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           E +  P+ +         +L F ++T+ ++ ER L E  E   +++ +K++F+ ++S+E+
Sbjct: 289 EITATPVYDDTGNEIIGGLLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEI 348

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIGF+DL+  +       ++ +Y+  +++++ +LL L++DILDL+ ++AG M  
Sbjct: 349 RTPLNAIIGFSDLICQTDDA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDF 405

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +Y+   +N+L+ ++   +  K     ++I             DR RL Q+   +++NAM 
Sbjct: 406 SYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMNNAMK 465

Query: 701 FSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           F+S+GS + L  +  R   +  F VK+ G  IP D    VF RFV        +G GLGL
Sbjct: 466 FTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF--IKGTGLGL 522

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I    I   GG + + + +   +    R+P +E
Sbjct: 523 AICRVIIERLGGTIGVETREGKGSCFWFRLPVRE 556


>gi|225868205|ref|YP_002744153.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701481|emb|CAW98633.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 441

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 158/374 (42%), Gaps = 32/374 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +  +  E +   L K       HL+ G+ +      + L++ +  + +   +   +    
Sbjct: 91  SDLLQKEARLKALSKNVEAVTSHLTMGMLLVSNQRELLLTSKSLPAYFPEAKPPFAVLED 150

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
           ++ I              DL A +   F D++++L+  L  L D   +LE +++P+ N  
Sbjct: 151 LKRI--------------DLIALVNQVF-DQKQTLKKELTGLHDGDLILEVTLVPIFNQS 195

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++         +    L     A+R  + +   F+ + S+ELR+P+T+I GF + +K  
Sbjct: 196 HVV---------KEVLVLLYDLTAIRHYERLNLEFIANASHELRTPVTSIKGFAETIKEM 246

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                + K+  +++ I   S  L  +V  +L L+   A    L+ +   L   L    QS
Sbjct: 247 PDDETSLKE-DFLDIIYNESLRLERIVEHLLTLSK--ANKTPLDLTEFQLRSFLLYTGQS 303

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  ++ +  + +    +  +    +D+  L QI   +LSNA+ ++  G  + L + R  G
Sbjct: 304 MRPQLEQKQLELSYALEDSI-VVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQRVAG 362

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +V + G  I +     +F RF         Q  G GLGL+IV+    L GG ++++
Sbjct: 363 GVAITVADTGIGISQIELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQLLGGQITVT 422

Query: 776 SSDEGVTTINCRIP 789
           S     +     +P
Sbjct: 423 SQLGEGSQFTLFLP 436


>gi|225388888|ref|ZP_03758612.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme
           DSM 15981]
 gi|225045061|gb|EEG55307.1| hypothetical protein CLOSTASPAR_02628 [Clostridium asparagiforme
           DSM 15981]
          Length = 525

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 125/243 (51%), Gaps = 11/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL +  +A R A++ K +F+  +S+++R+P+  I+G   ++  + LG+   K +  +  
Sbjct: 1   RALEDAYQAARVANDAKTNFLSSMSHDIRTPMNAIMGMA-VIAQANLGN-PEKLTDCLSK 58

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS SS  LL L+N++LD++ +++G + L+   + L DL+ EV        ++ + ++ + 
Sbjct: 59  ISTSSRHLLGLINEVLDMSRIESGKIDLSSEMVSLPDLVEEVIGICRPLSNQKHHQLFIS 118

Query: 673 SDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKN 725
           +D  +    V D  RL Q+   +LSNA+ ++  G T+ L+           G + F V +
Sbjct: 119 ADHVRHEKVVTDMNRLQQVLMNLLSNAVKYTPDGGTISLRLRELPSIVPGRGQYEFIVSD 178

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  +PED    +F  F         + +G GLG++I E+ +++  G + + S     + 
Sbjct: 179 NGIGMPEDFVPHIFEPFTRAEDSRISKIQGTGLGMTITENIVSMMNGTIEVKSQLGEGSQ 238

Query: 784 INC 786
              
Sbjct: 239 FIF 241


>gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
 gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
          Length = 1382

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/508 (19%), Positives = 190/508 (37%), Gaps = 55/508 (10%)

Query: 330 FHNRSFV-ELWEIDLAFLATNPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
           F N ++  +       +    P+N+   E+ + +        +    TW E +    + +
Sbjct: 70  FCNAAYRRDTLGRKYPWALGLPANEVWAEIWDDIGPRVDTVLRTGEATWDEGLLLFLERA 129

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL---TVQVDLETKYNTL---------V 433
              ++T+H     T          G  + M   +   T +V  E +  TL         +
Sbjct: 130 GYREETYH-----TFSYSPLRADDGSLVGMLCVVSEDTERVIGERRMATLRDLGSDPSVI 184

Query: 434 KVQGETIDHLSEGVA------------VFGPDGRIKLS--------NPAFRSLWKTEENR 473
           + + ET+  +S  +A            ++  DG  +L         +PA  +     +  
Sbjct: 185 RTEQETLAFVSRQLARNPQDLPFTLTYLYDDDGGARLVEATGLAAGHPAAPATLSPGDPA 244

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE------RKSLQGTLELLSDSVLE 527
                       +     +     DL A +  +   E      R+        L   +  
Sbjct: 245 APWPAGALTEGESVRVALDGPAFTDLPAGVWPAAPAEALLVPLRQQGGAPYGFLVAGLNR 304

Query: 528 YSIIPLPNAQTMLTFVNV----TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           Y  +       +            S R+ +A   + E L + D  K +F  ++S+E R+P
Sbjct: 305 YRALDDGYRGFVELTAGHLATGIASARSYQAQQRRAEELAELDRAKTAFFSNISHEFRTP 364

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT I+G  D L+  +L   + +    ++ I  +   L  LVN +LD + ++AG M+  Y 
Sbjct: 365 LTLIMGPLDELR-GRLQGADEQVRTELDVIRRNGLRLGKLVNSLLDFSRIEAGRMQARYE 423

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + L  +  ++     + +    +  +V           DR    ++   +LSNA+ F+ 
Sbjct: 424 PVDLAAVTADLASVFRSAIERAGLSFEVDCPPLPEPVHLDRGMWEKVVLNLLSNALKFTF 483

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
            G T+ ++   D    +  + + G  +P D    +F RF    NA      G G+GL++V
Sbjct: 484 DG-TIRVELRADGDAAVLRISDTGIGVPADEMPRLFERFHRIENARSRSDEGSGIGLALV 542

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + LHGG +  SS+    TT   R+P
Sbjct: 543 QELVTLHGGDIDASSAVGRGTTFTIRLP 570


>gi|255013618|ref|ZP_05285744.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 364

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 129/237 (54%), Gaps = 7/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ E+     K++ +K+SF+ ++S+E+R PL  I+GF+ LL   + G L   + +Y+  
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++ +LL +VND+LDLA +++G M  ++    L  L+ E   S   K+    + +   
Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVP-RGVALTYP 242

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +        +DR RL Q+    ++NA+ ++S GS +IL       + + SV + G  + E
Sbjct: 243 ASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGS-IILSYQAMENEVLLSVTDTGEGMSE 301

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   VF+RF     R Q++G+GLGLSI ++ +   GG + +SS     +   C +P
Sbjct: 302 EIKLHVFDRFYKG--RNQKQGIGLGLSICQNIVERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|153812172|ref|ZP_01964840.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174]
 gi|149831827|gb|EDM86913.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174]
          Length = 971

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 123/251 (49%), Gaps = 8/251 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D+ +    L    +    A   K  F+ ++S+++R+P+  I+G+  L++         +
Sbjct: 550 NDTQKLNDKLEIALKKAEDASFAKTRFLNNMSHDIRTPMNAILGYAQLMEDELKEKDLPE 609

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            S+Y++ +  S  +LL+++N++LD+A +++G M+++ +  ++ D+   + +    +  + 
Sbjct: 610 ISEYLKKLQQSGNLLLSIINNVLDMARIESGRMEIDENYGMIEDIWQTLFEIFDDEAKKK 669

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIF 721
           NI +    + +    + D  ++ +IF  ILSN M ++  G +V++          G  I 
Sbjct: 670 NIALHYTINVEHEHILTDVTKVKEIFVNILSNTMKYTPSGGSVMINIDELPCSGPGYMIV 729

Query: 722 --SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
              V + G  + ++   ++F  F    +  + +  G GLG+SIV+ ++ L GG + + S 
Sbjct: 730 RTRVSDTGIGMSQEYLTNIFEAFTRERNTTKSKIAGTGLGMSIVKKYVELLGGTIDVESE 789

Query: 778 DEGVTTINCRI 788
               +T    +
Sbjct: 790 LGKGSTFTVTL 800


>gi|229023488|ref|ZP_04179984.1| hypothetical protein bcere0029_18230 [Bacillus cereus AH1272]
 gi|228737756|gb|EEL88256.1| hypothetical protein bcere0029_18230 [Bacillus cereus AH1272]
          Length = 438

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 128/244 (52%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L    + + KA+++KN F+  +S+E+R+PLT I G+++ LK +     + + 
Sbjct: 200 ELGELAHSLNYMADKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTDEEI 258

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  
Sbjct: 259 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKQ 318

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++  +++ +    V DR RL Q+F  I+ NA+ +S++  T+ ++AA+  G  +  V + 
Sbjct: 319 IQL--VANLERVELVGDRNRLKQVFLNIIHNAIKYSNEKGTIYIEAAKSEGKAVIKVTDQ 376

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F          G G+GL+IV+  + LHGG +SI+S +   TTI  
Sbjct: 377 GIGIAKEHLPFIEQSFYQI--NSHIEGAGIGLAIVKKMVELHGGTLSITSRERVGTTILI 434

Query: 787 RIPS 790
           ++P 
Sbjct: 435 KLPL 438


>gi|163758106|ref|ZP_02165194.1| putative two-component regulator sensor histidine kinase protein
            [Hoeflea phototrophica DFL-43]
 gi|162284395|gb|EDQ34678.1| putative two-component regulator sensor histidine kinase protein
            [Hoeflea phototrophica DFL-43]
          Length = 1325

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 103/592 (17%), Positives = 225/592 (38%), Gaps = 37/592 (6%)

Query: 220  ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI 279
             S++ +   +         E+ +        R  +S+  E+              +  + 
Sbjct: 746  ASFEDDARADLEDSSATAAEASEQTTGIDAARDEASATDER----------STEGREAED 795

Query: 280  VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
              V  +   +  A+   + +           ++  +   + +   +  L   N  F+EL 
Sbjct: 796  APVPATPWPSAFALPPRQVM----HAGLNASLIDAIPSPLLVHAADT-LIHANPEFLELT 850

Query: 340  EI-DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
                L  L+     D LLE      +L E  +    + +  S   S+      W   +  
Sbjct: 851  GYGSLEALSEAGGLDHLLERSGDDGQL-EDGSLTVRRGDGASRKVSARLRSVNWGDAHAL 909

Query: 399  TLHVIV------------TSNPRGGTIWMFE-NL-TVQVDLETKYNTLVKVQGETIDHLS 444
             L +              +  P    I   + ++   Q           +     ++  +
Sbjct: 910  LLALAPATESAPEADQAESPAPVAQLIATNDMDIDPAQAGSSDALAIEAEELRSILETAT 969

Query: 445  EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            +GV +   DG I+  N +  +L+  +E+  +       + A  S+         L    +
Sbjct: 970  DGVVILDNDGTIRSMNGSAFALFNYDEHD-TLHQPFAMLFAHESQRAVMDYISGLAEHGV 1028

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALR 563
            +S  ++ + + G         L  +I  L  +        ++T   R E  L        
Sbjct: 1029 SSVLNDGREVIGREASGGFLPLFMTIGRLSRSNGYCAVLRDITQWKRTEEELRTAKRDAE 1088

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLN 622
             A+  K+ F+  VS+E+R+PL  IIGF++++   + G + + +  +Y   I  S   +L+
Sbjct: 1089 TANSHKSDFLARVSHEIRTPLNAIIGFSEMMSEERFGPIGSPRYLEYAHDIGNSGKHVLD 1148

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            +VND+LD++ ++AG + + ++ + LND L E    +    +   + I+      +   VA
Sbjct: 1149 IVNDLLDISKIEAGQVDMEFTAVSLNDHLAESVSLLQPMANSQRVIIRTSLSESVPDVVA 1208

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D++ + QI   +LSNA+ ++  G  +++  + + +G+ +  +++ G  +     +     
Sbjct: 1209 DQRSVKQIALNLLSNAIRYTPSGGQIVVSTSYEPSGNVVIRIRDTGIGMNRKELEQAMKP 1268

Query: 742  FVS-NAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F    A   QR  G GLGL + ++ +  +     I S+    T ++   P +
Sbjct: 1269 FGQVGAGPRQRGEGTGLGLPLTKAMVEANRAQFDIVSAAGEGTLVSIAFPPQ 1320


>gi|37526937|ref|NP_930281.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786370|emb|CAE15423.1| sensor protein (capsular synthesis regulator component C)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 938

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 159/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L       L+     R I   
Sbjct: 351 RLEEHEQFNHKIVASAPVGISILRVSDGSNILSN----ELAHNYLRMLTHEDRERIIHII 406

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  +  D       ++TS       LQ +         E +I            V+++
Sbjct: 407 CDRTSSYVD-------VVTSNHHH---LQISFVHSRYRNEEVAI---------CVLVDIS 447

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             VR E++L E   A  +A+  K+ F+  VS+ELR+PL  IIG  +LL+     SL ++ 
Sbjct: 448 VRVRMEKSLQEMALASEQANYSKSMFLATVSHELRTPLYGIIGNLELLQAH---SLPAES 504

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  ++ SS +LL +++DILD + +++  +K+        ++++ V  +    + +  
Sbjct: 505 VRLLSTMNNSSALLLKIISDILDFSKIESKQLKIESREFSCQEVISHVISNYLPLVVKKP 564

Query: 667 IRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +  ++  D  RL Q+ S +L+NA+ F+  G  VI+    D       +K+
Sbjct: 565 LTLYCYIEPGVPDYICNDPVRLQQVISNLLNNAIKFTDTG-CVIIHVTVDKDYLYVRIKD 623

Query: 726 NGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +     +F+ F           +G GLGL+I E  INL  G + + S  +  + 
Sbjct: 624 TGVGISDKALIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQPQIGSM 683

Query: 784 INCRIPS 790
            + R+P 
Sbjct: 684 FSIRLPL 690


>gi|330972152|gb|EGH72218.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 595

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 147/359 (40%), Gaps = 21/359 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +      
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGH---------SLGEALG 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +E+  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E K     +  E +I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQDIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +F  FV      ++ G GL L++ +  + LHGG + + S     T     +P 
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLRLALCKEIVQLHGGRMGVYSRPGQGTQFYMALPL 595


>gi|254507496|ref|ZP_05119630.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219549566|gb|EED26557.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 787

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 154/375 (41%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   T  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKESQLVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   ++D          +++   +   G       +  E   +P  +     
Sbjct: 202 DVYSKEVAQQIVDTDQKVFSDNQALTYEQWLEYPDG-----HKNYFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++  
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q  +++ I+ S+  L N+ NDI+D+   D   ++L  S +   + + E++   A 
Sbjct: 313 -LTEEQRHHMQTINVSAITLGNIFNDIIDMDKFDRRKLELYPSALNFENFVAEIESISAL 371

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD 718
              +  +R  +     L      D  RL Q+   ++SNAM F+ +G  V  + A  ++  
Sbjct: 372 MATQKGLRFDLERLSSLPSEIEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAEMEDAF 431

Query: 719 FIF--SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 V+++G  IPE   + +F  +             G G+GL++ +  IN+  G ++
Sbjct: 432 ATITMEVEDSGIGIPEAELEKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDIT 491

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T    I
Sbjct: 492 VTSEEGFGSTFTVTI 506



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 80/203 (39%), Gaps = 21/203 (10%)

Query: 121 FHHYIKLSKATEKLRK-EGQSFDLVAETQNDCA---IKIEGRVSGSCAFLRILSLDGIYS 176
                +LSK   KL+    +  +L  + Q + A    +IE R+    A  R  ++  + +
Sbjct: 81  EESRQRLSKLVSKLKDMRSRDQELNIKLQQNIAKLNQEIEERIKAEEA--REEAMKDLEN 138

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E+ +      +L+   ++ +   D+   L+++R+  G     N + ++ T   G    + 
Sbjct: 139 EVYQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCNRAMEELT---GKKESQL 195

Query: 237 IGESR-KLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVL------N 284
           +G +   ++ +E+ ++++ +        +    E       G+   +++ +V        
Sbjct: 196 VGLTPWDVYSKEVAQQIVDTDQKVFSDNQALTYEQWLEYPDGHKNYFELRKVPFYSKDGR 255

Query: 285 SFGEAGIAIDVSKEITVNDQLTH 307
             G  G   D+++     + L  
Sbjct: 256 HLGLVGFGRDITERKRHEESLEK 278


>gi|188990705|ref|YP_001902715.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris
            str. B100]
 gi|167732465|emb|CAP50659.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1292

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 117/248 (47%), Gaps = 12/248 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  ++   L+ KQ  Y 
Sbjct: 904  AWQLAVHKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQ---LDHKQRSYT 960

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  + + LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R  
Sbjct: 961  ESIRRAGSHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS 1020

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
            +   G LG      D  R+ QI   +LSNA+ F+ +G  V LK +         F V + 
Sbjct: 1021 LEV-GLLGDITASGDPTRIRQILLNLLSNAIKFTERG-VVGLKLSTLGSYQGLRFEVADT 1078

Query: 727  GSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  D    +F RF          +  G GLGL+I +      GGH+ + S     T 
Sbjct: 1079 GPGINADQKVRLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTR 1138

Query: 784  INCRIPSK 791
                +P +
Sbjct: 1139 FVVDLPLR 1146


>gi|254442851|ref|ZP_05056327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257159|gb|EDY81467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 795

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 154/389 (39%), Gaps = 28/389 (7%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            DL         V   ++D + +       + R ++ N  + S        ++    I  
Sbjct: 122 RDLSAMLAVYSGVFRNSLDEIDQKALALAMEDRSRIENFKYVSTAVLVSAVVAFSISILW 181

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERK-----SLQGTLELLSDSVLEY--SIIPLPN 535
           I         +    DL  A  +S +  RK          ++ L D V  Y  S+  + +
Sbjct: 182 IRTRTVNDIVDP-IVDLSEAASSSHETGRKMNVMPRGPMEVQALIDGVQVYANSLHDIVD 240

Query: 536 AQTMLTFVNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           A+T        +  +  +          E     + A+E K+SF+ ++S+E+R+P+  I+
Sbjct: 241 ARTAQLTRANKELEQQAKLANDSAAEARELARQAKAANETKSSFLANMSHEIRTPMNGIL 300

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G  +LL+        + Q+  +     S+  LL +VN+ILD + ++A  + +  +   L 
Sbjct: 301 GMLNLLEDM---DNPADQADLILTAQDSAKSLLEIVNEILDFSKIEANAIDIEKTEFDLR 357

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
           D +      ++   H+  + +       +    + D  R+ Q+   +L N++ F+ +G T
Sbjct: 358 DSIYGATDLVSLTAHDKGLELVAQIASDVPRYLIGDPLRIRQLCINLLGNSLKFTKEG-T 416

Query: 708 VILKAA------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
           V+L  +      R+     F + + G  IP +   ++F+ F        R   G GLGLS
Sbjct: 417 VMLAVSKAAQQPRNATRLRFEISDTGMGIPPEKVDTLFDPFSQVDSSTTRNFGGTGLGLS 476

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +    L  G + ++S     +     I
Sbjct: 477 ICKKLAELMSGEIGVTSVVGEGSVFWFEI 505


>gi|171912720|ref|ZP_02928190.1| PAS sensor signal transduction histidine kinase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 796

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/507 (19%), Positives = 194/507 (38%), Gaps = 31/507 (6%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           ++  V D L     ++ +++ A   FD      F N     L       L        + 
Sbjct: 164 RQYQVRDLLEERQAVVASISDAFVTFDSAWRCTFLNEKGEVLAGRKKEELIGRC----IW 219

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           E    A +LP       ++    ++ +      + +H    + L V +  + RG ++++ 
Sbjct: 220 EVFPEARELP------IYEAVQRAMVQQQNLDFEQYHATLNRWLEVRIYPSSRGISVFI- 272

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            ++T +   + +           ++    G      D  + L+N       + ++     
Sbjct: 273 SDVTERRHAQNELRESKARLEFALNAAQMG------DWDLNLANNTSHRSLRHDQVFGYT 326

Query: 477 GTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                    T   + +  D  ++   F+A I S +  R   +      S   +       
Sbjct: 327 KPVREWGLETFLEHVHPDDREEVSRKFSAAIASNESWRLECRVIWPDSSVHWIAIHGGLY 386

Query: 534 PNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             A     + + T +++T    AE AL ++ +ALR+AD  K+ F+  +S+ELR+PL  + 
Sbjct: 387 HEAIGRFPRMIGTVMDITARKDAEVALLQQTQALREADRKKDEFLAMLSHELRNPLAAVS 446

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
               L+      S           I   +  L +L++D+LD++ +  G + L    I   
Sbjct: 447 HAAMLVND---ASEMEDLHWAAGVIDRQTRQLAHLIDDLLDVSRITTGKIHLRKEVIDAA 503

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +L+   ++    M +   R++           AD  R+ Q+   +L+NA  ++  G  +
Sbjct: 504 IVLDHACETAGPLMIDRGHRLRRRYLQGELWLEADATRIEQVVLNLLTNAAKYTPNGGQI 563

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
            L A R  G+ +  V +NG+ I  +    +F  F            G+G+GL+IV+    
Sbjct: 564 ELAARRQEGEVVIQVCDNGTGIVPERLPEMFQLFTQGERSIARSEGGLGIGLTIVQKIAE 623

Query: 767 LHGGHVSISSS-DEGVTTINCRIPSKE 792
           +HGG V   S   +  +T    +P  +
Sbjct: 624 MHGGRVEAVSPGPQQGSTFTVHLPLAD 650



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 136/414 (32%), Gaps = 41/414 (9%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI----- 220
           +R  +L         + L+  ++ + +   + +  S+       D A    + N      
Sbjct: 146 VRPTTLVNSCKVALRSRLRQYQVRDLLEERQAVVASISDAFVTFDSAWRCTFLNEKGEVL 205

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           + +K  E  G    +   E+R+L    I + +  +   ++N            N+  ++ 
Sbjct: 206 AGRKKEELIGRCIWEVFPEAREL---PIYEAVQRAMVQQQNLDFE--QYHATLNRWLEVR 260

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE 340
              +S G +    DV++     ++L  +   L     A  + D +  L   N +      
Sbjct: 261 IYPSSRGISVFISDVTERRHAQNELRESKARLEFALNAAQMGDWD--LNLANNTSHRSLR 318

Query: 341 IDLAFLATNP----SNDELLEFLRSANKLPEQLNW-------KTWKENIFSVYKSSETHK 389
            D  F  T P      +  LE +   ++      +       ++W+     ++  S  H 
Sbjct: 319 HDQVFGYTKPVREWGLETFLEHVHPDDREEVSRKFSAAIASNESWRLECRVIWPDSSVH- 377

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
             W   +G   H  +   PR   I    ++T + D E       +   E      E +A+
Sbjct: 378 --WIAIHGGLYHEAIGRFPR--MIGTVMDITARKDAEVALLQQTQALREADRKKDEFLAM 433

Query: 450 FGPDGRIKLSNP-AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
              + R    NP A  S      N  S    +   A    R   +       A +I    
Sbjct: 434 LSHELR----NPLAAVSHAAMLVNDASEMEDLHWAAGVIDRQTRQ------LAHLIDDLL 483

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           D  +   G + L  + V++ +I+ L +A      + +    R  R   +    L
Sbjct: 484 DVSRITTGKIHLRKE-VIDAAIV-LDHACETAGPLMIDRGHRLRRRYLQGELWL 535


>gi|206969941|ref|ZP_03230895.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206735629|gb|EDZ52797.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 484

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 129/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + E  I +++          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVRLQLHASPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESEIGKGTSIFFSL 476


>gi|149235444|ref|XP_001523600.1| hypothetical protein LELG_05016 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452579|gb|EDK46835.1| hypothetical protein LELG_05016 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1142

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 17/273 (6%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            ++  L     + T +N       E  +  T   EA   A+  K+ F+ ++S+E+R+PL 
Sbjct: 453 ITVEALGEMDALKTKINQMVLNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLN 512

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            IIG T L   ++   L   Q + +  +   +  LL +++DILD++ ++A  M +     
Sbjct: 513 GIIGMTQLSLDTE---LTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDF 569

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSK 704
            L   +    +++A K  E N+ +    D     + + D  RL Q+   +  NA+ F+ +
Sbjct: 570 SLRGTVFGALKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKE 629

Query: 705 GSTVILKAARDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           G  V +   + +              V + G  I +D    +F+ F        R   G 
Sbjct: 630 G-RVSVSVKKSDKTAEDSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGT 688

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           GLGLSI    I+L GG + ++S     +  N  
Sbjct: 689 GLGLSISRQLIHLMGGEIWVTSEYGSGSNFNFT 721


>gi|322387745|ref|ZP_08061354.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779]
 gi|321141612|gb|EFX37108.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779]
          Length = 449

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 139/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     E +  
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLHSILSYMTDGVLATNRRGQITMINDMAKRQLGVESD-- 132

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +           D ++L   I  S +    S     E +S  V  +++I   
Sbjct: 133 ------DALNQNILELLKIEDEYELRDLITQSPEMMIYSQNVNGEYISLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGAL--YEPVAPDFIKVSLNETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   ++  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRSQDQEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVT 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP++    +F+RF          + G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKEDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|325680246|ref|ZP_08159808.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108063|gb|EGC02317.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 1019

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 10/251 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           + +S+   RAL++   A  +A + K SF+  +S+E+R+P+  IIG   +   +    L  
Sbjct: 485 MRESMAQSRALSDALAAAEQASKAKTSFLSSMSHEIRTPMNAIIGLNAIALNAP--ELTD 542

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K   Y+E I +S+  LL+L+NDILD++ +++G   L       + LL ++      +  +
Sbjct: 543 KTRDYLEKIGSSANHLLSLINDILDMSRIESGKTVLKNEDFSFSKLLEQINTIFGAQCAD 602

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGD 718
             +     I       ++ D  +L Q+   IL NA+ F+ +G +V L   R         
Sbjct: 603 KGLDYNCRIIGSVDAHYIGDNMKLQQVLINILGNAVKFTPEGGSVALTVERTAHFDSRST 662

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISS 776
              ++ + G  +  +    +F  F              GLG++I ++ + +  G++ + S
Sbjct: 663 LRLTISDTGIGMSSEYLPKLFETFSQEDSSATNRYGSSGLGMAITKNIVEIMNGNIEVQS 722

Query: 777 SDEGVTTINCR 787
                TT    
Sbjct: 723 EKGKGTTFIVT 733


>gi|46123225|ref|XP_386166.1| hypothetical protein FG05990.1 [Gibberella zeae PH-1]
          Length = 1996

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 122/716 (17%), Positives = 236/716 (32%), Gaps = 104/716 (14%)

Query: 120  KFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
              +    L+   +  R   Q   ++     D A   +     S    R   +       +
Sbjct: 915  DDNSAQNLADTLKTGRGNRQGHSMLHSYGADFASTFQSLPPSSTLSARPTPVSAPSRSGS 974

Query: 180  ETTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKAIG 238
             TT           +  ++ DSL   V+    Q G+I+W N  Y        +       
Sbjct: 975  LTTTAVDMPPPSDRLKGLILDSLPAHVFVALPQTGEIVWVNSRYLSYRGQTAVDLAADPW 1034

Query: 239  ESRKLFKEEIKKRMISSS-ALEKNFCETVST-LEHGNNKSYKIVRVLNSF------GEAG 290
             S      +   +    S    + F  TV      G  + +    V +           G
Sbjct: 1035 GSLHPDDRDEYLKAWGHSIRTGEQFSRTVRIKRFDGAYRWFYARAVASKDKRGVIMQFLG 1094

Query: 291  IAIDVSKEITVNDQLTHTYEI---------LHNL-TVAIAIFDQNRYLQFHNRSFVELWE 340
              +D+  +     +     EI         L NL    I    ++  + F N  ++    
Sbjct: 1095 SYMDIHDQHIAELKAARQEEIEASEAKHRLLANLIPQIIFTATEDEGITFANEQWLSYTG 1154

Query: 341  ------IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
                  + L F+     +D  L   R     P     +  ++   S Y+    H +    
Sbjct: 1155 QSFSDSLGLGFMDFVHPDD--LAKCRIPTTQPPTPGGQR-RDGQNSAYQQGSQHSEATST 1211

Query: 395  PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV--AVFGP 452
                T+    T  P+   +   + +  + +  +  +       +  +   +G+       
Sbjct: 1212 ---STIQASRTRTPQDSPMRGTQQVLSRHNSSSGSSAYEWPTADLTELARKGIIKVATDS 1268

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
             GR+                                                 S+  E +
Sbjct: 1269 AGRV-------------------------------------------------SYTTEVR 1279

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
             L  T E     +    I  +       ++      +   + L  K +      E K  F
Sbjct: 1280 LLSKTGEYRWHLIRCVEIDTIDFGSGASSYFGSATDINDHKLLETKLKEAM---ETKGRF 1336

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            + ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+ ++NDILDL+ 
Sbjct: 1337 LSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQLDYTNTIQTSANSLIMIINDILDLSK 1393

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
            VDAG+MKL +       ++ +V + ++T      + +  + +  + ++V  D+ R+ Q+ 
Sbjct: 1394 VDAGMMKLKHEWFHTRSMIEDVNELVSTMAIAKRLELNYLVEADVPAWVKGDKVRIRQVL 1453

Query: 692  SKILSNAMDFSSKGST-----VIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
              +  NA+ F+++G       V +      A +     FSV + G    ++    +F  F
Sbjct: 1454 LNVTGNAIKFTAEGEVFSRCRVYMAEGSSVADNEIMLEFSVIDTGRGFSKEEADLIFKPF 1513

Query: 743  VS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR----IPSKE 792
                 +   Q  G GLGL I      LHGG+++  ++    +T        +P+ E
Sbjct: 1514 SQIDGSSTRQHGGSGLGLVISRQLAELHGGNMTGRATPGKGSTFTFTARFGLPTAE 1569


>gi|164504822|gb|ABY59649.1| BarA [Yersinia ruckeri]
          Length = 865

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 272 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 328

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 329 QRSANNLLSIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQV 388

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNGDFIFSVKNNGS 728
           +  +    V D  RL Q+ + +L NA+ F+  G+  + +      R        +++ G 
Sbjct: 389 NNDVPEQVVGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSLRSHTRRQIKLAVEIQDTGI 448

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +    G +S  S     +T   
Sbjct: 449 GISEQQQSQLFQAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRF 508

Query: 787 RI 788
            I
Sbjct: 509 HI 510


>gi|254458747|ref|ZP_05072171.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207084513|gb|EDZ61801.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 685

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 11/244 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E    A+ +K+ F+ ++S+E+R+P+  IIGFTDLL+ S   + N     YV+ +
Sbjct: 216 ELKQAKEEADSANNMKSEFLANMSHEIRTPMNAIIGFTDLLEKSVKDTTN---QNYVKSV 272

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS ILL ++NDILDL+ V+AG +++ +    +  + +E+K     K     +++KV  
Sbjct: 273 QDSSKILLAIINDILDLSKVEAGKLEIQHIATDIRTIGDEIKNVFYHKAKSKALKLKVNI 332

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG--DFIFSVKNNG 727
           +  + S  + D  R  Q+   ++SNA+ F+ +G     +     +D    +    V+++G
Sbjct: 333 EESVPSSLMLDEVRTRQVLLNLISNAIKFTPEGFVNLNIFSSLNQDTNLINLTIEVEDSG 392

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +     +F  F    N    +  G GLGL+I +  + L GG +S+ SS +  +T  
Sbjct: 393 IGMDKSEQDKMFEAFAQHTNQSNKEYGGTGLGLAITKKLVTLMGGDISVKSSKDNGSTFR 452

Query: 786 CRIP 789
             +P
Sbjct: 453 IILP 456


>gi|95930270|ref|ZP_01313008.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133733|gb|EAT15394.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 946

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/573 (18%), Positives = 218/573 (38%), Gaps = 59/573 (10%)

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG---IAIDVSKEITVNDQL 305
                    + +N   ++  L H    + + + V N+   A    +A ++ +       L
Sbjct: 396 ASETRELGQVLQNMLASMKGLLHDKEAAMRAIEVSNNDLIAANKQLAREMVERQEAQQAL 455

Query: 306 THTYEILHNL----TVAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
            +  +   +L      AI + D +   +   N +  E++      +      D      +
Sbjct: 456 ENNEQKYRSLFELSYDAIVLADCDSHQILDSNHAAEEMFGYSHDEMQGMVPKD-FSPINQ 514

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP-NGQTLH--VIVTSNPRGG---TIW 414
           +   L E        E I  +        +  H   +G      V +T  P  G    + 
Sbjct: 515 ADGSLSELKV----SEKISRLIHEGHQFFEWTHKKRDGTLFQAEVHLTLIPLDGKQAMLA 570

Query: 415 MFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           +  ++T +   E           +        +  +S+G+ V  P GRI L N + +   
Sbjct: 571 VVRDVTQRKYAEAALVNALADAESSRDKIDAILKAISDGLIVVDPLGRIILINQSAQDWL 630

Query: 468 KTEE-----NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              E      +++   H  +++                   +   D ER  L        
Sbjct: 631 GLPEGETLNRQVATVLHDNDLSVLVGSILAGESLSRHCEVEVPIADQERNRLMA------ 684

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              ++ + +   + +   T + + D  R ER L          D++KN F+   ++EL +
Sbjct: 685 ---VQVTAVQNDDKEISGTLILLRDITR-EREL----------DQLKNEFISSAAHELNT 730

Query: 583 PLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MK 639
           PLT I+GF +LL  +  +      +Q +++E I     +L ++V+D+L L  ++ G  ++
Sbjct: 731 PLTVIMGFAELLVNREYRQSITLEQQQEFLETIRNKGEVLTSIVDDLLKLEQLEFGQSIQ 790

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L Y    L   +  + +       ++    + I   +     AD++R+ Q+   +LSNA+
Sbjct: 791 LQYHCFDLQLDIMTLVKHYEKTYTDH----RFIVMVEPCELWADQERVGQVLDNLLSNAV 846

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGL 758
            FS   + + +     N   + +V++ G  + +     VF++F         + G+GLGL
Sbjct: 847 KFSPPQTRIHISLQMKNHQAVITVRDEGIGMEQKNIDKVFDKFFRIDGSTTSKGGLGLGL 906

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ +S I+ H G + + S  +  TT+   +P +
Sbjct: 907 TVAKSIIDAHHGSIRVDSEVDRGTTVTLTLPCQ 939


>gi|304393564|ref|ZP_07375492.1| histidine protein kinase DivJ [Ahrensia sp. R2A130]
 gi|303294571|gb|EFL88943.1| histidine protein kinase DivJ [Ahrensia sp. R2A130]
          Length = 564

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 153/371 (41%), Gaps = 10/371 (2%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +  +L++      DH +E +      G     + A   L   E   L  G  +      
Sbjct: 132 ERERSLIERADLLADHSNEMLMRLNRSGHAAFVSKASVRLSGHEPTSL-HGAGLLEAMHV 190

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLPNAQTMLTFV 543
             R        D  A+        R  ++G  ++L     E++II   P+ + + +  + 
Sbjct: 191 QDRVVFLKAVNDSVASRACVSTKARLRVRGHSDVL---WREFAIILHPPIKSRELVAVWH 247

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           + T     E  L   + A  +  E +      +S+ELR+PL  I GF+ LL +   G L 
Sbjct: 248 DNTRVGALEDRLDAMDVATLERGESQAKKFAQMSHELRTPLNAIGGFSQLLASGVAGPLT 307

Query: 604 -SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             KQ +YV  I  SS  LL +V D+LD++ +D G  +L+ +     ++       +  + 
Sbjct: 308 TDKQREYVALIQQSSDHLLQIVGDLLDVSRIDQGHFELDVAAFDFVEMAQSTTAMMQAEA 367

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              +I +       L + V DR+   Q+   +LSNA+ FS  GS+V L A R        
Sbjct: 368 IAADIDLVCDMPKSLAAVVGDRRACQQVLINLLSNAIKFSPAGSSVRLTARRHGRFVKIR 427

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
             + G  +  +    +   F+      +    G GLG+S+V+  + LHGG +   S  + 
Sbjct: 428 CSDFGIGMTREFIDQIGRPFMQAQPASEGGPTGSGLGVSVVKGLVELHGGQIHFDSKPDE 487

Query: 781 VTTINCRIPSK 791
            TT+   +P +
Sbjct: 488 GTTVTVMLPFR 498


>gi|149191688|ref|ZP_01869930.1| sensor protein TorS [Vibrio shilonii AK1]
 gi|148834477|gb|EDL51472.1| sensor protein TorS [Vibrio shilonii AK1]
          Length = 973

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 114/235 (48%), Gaps = 7/235 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A+  K++F+  +S+E+R+P+  ++G   L++ +    LN++Q ++++ I+ S   LL
Sbjct: 463 AEQANRAKSAFLATMSHEIRTPMNGVLGTATLMEET---PLNNQQQKFLDVINRSGQNLL 519

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ND+LD + ++AG +++      L  ++ +  Q +  K  E  +  K   +  +    
Sbjct: 520 AILNDVLDYSKIEAGHLEIRNKPFDLYRMIQDCYQLMLGKALEKGLDFKFHIESDVSDVY 579

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
             D  RL Q+ + ++ NA+ F+  G   + +    D+   +   V + G  I  +   ++
Sbjct: 580 CGDVTRLSQVLNNLVGNAIKFTPSGQVDIYVSLDPDDETCVMIEVSDTGVGISPEDQLNL 639

Query: 739 FNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F+ F    +      G GLGL+I +  +    G + + S  E  +     +P ++
Sbjct: 640 FDAFTQAENGYSTAGGTGLGLAISQKLVKAMNGAIYVDSYLEEGSRFWFVVPLEQ 694


>gi|325959355|ref|YP_004290821.1| multi-sensor signal transduction histidine kinase [Methanobacterium
            sp. AL-21]
 gi|325330787|gb|ADZ09849.1| multi-sensor signal transduction histidine kinase [Methanobacterium
            sp. AL-21]
          Length = 1246

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 117/680 (17%), Positives = 241/680 (35%), Gaps = 92/680 (13%)

Query: 185  CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
             +KL      ++ + ++L       +    I+  + S             + + E + LF
Sbjct: 583  ERKLHKSEEKYRNIINNLQDGFIRVNTESKIVMVSPSAAMMLGYSSSKTMQGV-EVKTLF 641

Query: 245  KEEIKKR----MISSSALEKNFCETVSTLEHGNNKS-----YKIVRVLNSFGEAGIAIDV 295
             +  +      +++     KN   T+  L+ G+  +     Y +       G      D+
Sbjct: 642  SDSTQLSGIIHLLNRKGEVKNLESTLIKLDGGSFYASLNCQYHLGEHGQKKGIDMFVKDI 701

Query: 296  SKEITVNDQLTHTYEILHNLTVA--IAIFDQ-----NRYLQFHNRSFVELWEIDLAFLAT 348
            +++      L  +    +NL  A  IA+               +     ++ +D      
Sbjct: 702  TEQKQTEADLEKSR---NNLAEAQRIALIGSWEWEVETDELSWSDELYSIFNLDKK--HY 756

Query: 349  NPSNDELLEFLRSANKLPEQLNW--KTWKENIFSVYKSSETHKDTWHLPNGQTLHVI--V 404
             P+     ++L      PE   +  K +   +    K     K   +  + + L  +  V
Sbjct: 757  TPTMKSFFKYLH-----PEDREFVSKQFNTIVLDDEKVKFDFKVVLNNVSTRILTALAEV 811

Query: 405  TSNPRGG----TIWMFENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAV---- 449
            T +   G     + +++++T     E +          +  V  E++   SE   V    
Sbjct: 812  TDHDLAGNAKKIMGIYQDVTEIKLAEQEILTGKSVIEAINNVFQESLTAESEKEVVMKCL 871

Query: 450  ----------------FGPDGRIK---LSNPAFRSLWKTEENRLSPGTHI-----RNIAA 485
                                GR+    LS P +          L     I     R I  
Sbjct: 872  EVAEDLTGSEFGFLGEINKKGRLDDRALSPPGWSKCETENATELLKDMEIVSYWGRTIKE 931

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
            + S+  N+ +       +          L   L+   +      +I L N +   T  + 
Sbjct: 932  SRSQLVNDPNSDPDSRGLPDGHPPINNFLGVPLK---EGAKTIGMIALANKKGGYTHQDK 988

Query: 546  TD-------------SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +               +AE  +T   + L ++++    F    S++LR PL  I  F  
Sbjct: 989  RNIETLSVAFVEVLLRKKAEVEITNHMKRLAQSNKELEQFAYITSHDLREPLRMITSFLQ 1048

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL+      L+   ++++E+  A +  L N+ ND+L  + + +   ++    +   ++L 
Sbjct: 1049 LLQRRYEDKLDDDANEFIEFAVAGAKRLDNMTNDLLSYSRIASSKRQIKL--VNFEEVLK 1106

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILK 711
            E  Q++   + EN     VI+   L +   D +  +Q+F  I+ NA+ + S K   + + 
Sbjct: 1107 ETLQNLKVPIEENK---AVITHEPLPTIKGDAKLKIQLFQNIIGNAIKYRSEKTPEIHIS 1163

Query: 712  AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            A ++N  ++FS+K+NG  + +     +F  F       +  G G+GL+I +  ++  GG 
Sbjct: 1164 AKKENDHYLFSIKDNGIGMSKQHLDKIFTIFQRLHTHEEYEGTGIGLAIAQKIVHQQGGT 1223

Query: 772  VSISSSDEGVTTINCRIPSK 791
            +   S     +T    IP K
Sbjct: 1224 IWAKSEPGKGSTFYFTIPIK 1243



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           T++ P  +   + V S  +     +FE+++ +++ E K +   +     I++L +G    
Sbjct: 548 TYYEPLQKHFSISVISPDKNSFATVFEDISSRIEYERKLHKSEEKYRNIINNLQDGFIRV 607

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             + +I + +P+   +     ++   G  ++ + +  ++              + +   E
Sbjct: 608 NTESKIVMVSPSAAMMLGYSSSKTMQGVEVKTLFSDSTQLSGIIH--------LLNRKGE 659

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPN-------AQTMLTFVNVTDSVRAERALTEKNEALR 563
            K+L+ TL  L       S+    +           +   ++T+  + E  L +    L 
Sbjct: 660 VKNLESTLIKLDGGSFYASLNCQYHLGEHGQKKGIDMFVKDITEQKQTEADLEKSRNNLA 719

Query: 564 KADEI 568
           +A  I
Sbjct: 720 EAQRI 724


>gi|323491062|ref|ZP_08096254.1| aerobic respiration control sensor protein ArcB [Vibrio
           brasiliensis LMG 20546]
 gi|323314726|gb|EGA67798.1| aerobic respiration control sensor protein ArcB [Vibrio
           brasiliensis LMG 20546]
          Length = 781

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 157/375 (41%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +     DG     N A   L   +E++L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKESQLVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   ++D          +++   +   G       +  E   +P  + +   
Sbjct: 202 DVYSKEVAQQIVDTDQKVFSDNQTLTYEQWLEYPDG-----HKNYFELRKVPFYSKEGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++  
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q  +++ I+ S+  L N+ NDI+D+   D   ++L  ST+   + + E++   A 
Sbjct: 313 -LTEEQRNHMQTINVSAITLGNIFNDIIDMDKFDRRKLELFPSTLNFEEFVAEMESISAL 371

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD 718
              +  +R  +    +L S    D  RL Q+   ++SNAM F+ +G  V  + +   +  
Sbjct: 372 MASQKGLRFDLERLSELPSAIEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSSEVTDEH 431

Query: 719 FIF--SVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 ++++G  IPE   + +F  +             G G+GL++ +  IN+  G ++
Sbjct: 432 AHITMEIEDSGIGIPEAELEKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDIT 491

Query: 774 ISSSDEGVTTINCRI 788
           +SS +   +T    I
Sbjct: 492 VSSEEGFGSTFTVTI 506



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  +  E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMKDLEDEVYQREKTQVELAERTALLRSFIDASPDLIYYRNADG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVS 267
                N + ++ T   G    + +G +   ++ +E+ ++++ +        +    E   
Sbjct: 176 VFSGCNRAMEELT---GKKESQLVGLTPWDVYSKEVAQQIVDTDQKVFSDNQTLTYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G+   +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGHKNYFELRKVPFYSKEGRHLGLVGFGRDITERKRHEESLEK 278


>gi|293369521|ref|ZP_06616100.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635406|gb|EFF53919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 1197

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 150/344 (43%), Gaps = 16/344 (4%)

Query: 449 VFGPDGRIKLSN-PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           V+  +G     N     S  +   + L PG ++  + A  +         + F  II  +
Sbjct: 558 VYKLEGFETEWNYSRHVSFARASYSNLPPGEYVFKVKACNNNGKWSEATTEFFVHIIPMW 617

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
              +     TL +     L   +I    A+  +      + +   +        + +  +
Sbjct: 618 --YQTWWAKTLFIFFSVGLLVFVIYFFIARAKMKMQVRIEQIERNK--------IEEISQ 667

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            K  F  ++S+ELR+PL+ I+   + LL  S L     +Q   ++Y+  +   LL++VN 
Sbjct: 668 EKVRFYMNMSHELRTPLSLILAPLEELLGQSNLKGTPVQQK--LDYVYKNGRKLLHIVNQ 725

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD    +AG+M ++ + + +  LL +          +  I   + SD +   F ADR  
Sbjct: 726 LLDFRKAEAGVMPIHVAQVNVEGLLQDAFALFKENAQKRAISFHIKSDLEGRLFPADRTY 785

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           +  I   +LSNA  F+  G +++L    +   + F+V+++G  +  +    +F RF    
Sbjct: 786 VETILMNLLSNAFKFTPDGGSILLSLWTEGDTYGFTVRDSGIGMSPEQLTRIFERFYQVD 845

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             GQR+G G+GLS+V+  +  H G ++++S     T     +P+
Sbjct: 846 --GQRKGTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKVTLPA 887


>gi|86148721|ref|ZP_01066997.1| sensor protein TorS [Vibrio sp. MED222]
 gi|85833490|gb|EAQ51672.1| sensor protein TorS [Vibrio sp. MED222]
          Length = 1007

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A   K++F+  +S+E+R+P+  ++G   LLK + L  L   QS Y + I+ S   LL
Sbjct: 463 AEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPL---QSGYADIINRSGKNLL 519

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ND+LD + ++AG +++  ++  L  ++ +  Q +  +  E  +      +  +  + 
Sbjct: 520 AILNDVLDYSKIEAGHLEIRTASFDLYQMVKDTYQLMEGRAAEKKLNFDFHIESNVQRYW 579

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMCKSV 738
             D  R+ QI + ++ NA+ F+  GS  + +     D    +F V + G  I       +
Sbjct: 580 RGDVTRISQILNNLVGNAIKFTETGSVDIFISLDIEDENRVMFEVSDTGVGIDSKEQACL 639

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+ F    + R +  G GLGL+I +S +    G + + S +   +     +P 
Sbjct: 640 FDAFTQTGSGRNKTGGTGLGLAISKSIMQAMNGDIGVHSEEGEGSQFWFSVPL 692


>gi|317486729|ref|ZP_07945546.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316922112|gb|EFV43381.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 887

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 129/262 (49%), Gaps = 10/262 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +Q ++   + T      +AL++  E  R A+  K++F+ H+S+E+R+P+  IIG T ++ 
Sbjct: 335 SQRIIVLFDQTKEFAYRQALSDALENARNANTAKSNFLSHMSHEIRTPMNAIIGMT-VIA 393

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++L    S+    +  I+ SS  LL L+ND+LD++ ++ G + + +        L  V 
Sbjct: 394 LTRLDD-RSRMEDCLTKIALSSRHLLGLINDVLDMSKIEGGKLTIAHEPFNFKISLQGVI 452

Query: 656 QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             I  +  E  +  +V   G      + D  RL QI   ILSNA+ F+  G ++ L+  +
Sbjct: 453 NLIQPQALERGLDFEVSLSGVDEEELLGDALRLNQILINILSNALKFTPVGGSIRLEVHQ 512

Query: 715 -----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINL 767
                +N  F F +++ G  + ++  K ++  F         +  G GLG++I ++ ++L
Sbjct: 513 LHKKNNNVQFRFVIRDTGIGMSQEFIKRLYTPFEQATSSTASKFGGTGLGMAITKNLVSL 572

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GG + + S +   T     +P
Sbjct: 573 LGGTIFVKSEEGRGTEFTVELP 594


>gi|299145365|ref|ZP_07038433.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298515856|gb|EFI39737.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 628

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/543 (20%), Positives = 212/543 (39%), Gaps = 44/543 (8%)

Query: 268 TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           T E+GN   Y I  V +    A      S    +         I   L + I ++D +  
Sbjct: 106 TDENGNEIIYGISEVQDGPDMA------SAYQALQYSERLLSNIFKYLPIGIELYDMDGV 159

Query: 328 LQFHNRSFVELWEID--LAFLATNP-SNDELLEFLRSANKLPEQLNWKTWKE--NIFSVY 382
           L   N   +E++ I+     L  N   N    + ++   K  E  ++    +   + S Y
Sbjct: 160 LVDLNDKELEMFHIEKKEDVLGINIFENPIFPKEMKERLKKNEDADFTFRYDFSKVGSYY 219

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           ++++       +    TL+   + +     + +  + T       K     +      D+
Sbjct: 220 QNTQKQGTIDLVTKVTTLY--DSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDY 277

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
              G A F       LS   +           +  T + +I  T   ++ +       A 
Sbjct: 278 AKVGYAHFN-----VLSGHGYAQKSWYRNVGEADETPLSDIFGTYQHFHPDDR-----AL 327

Query: 503 IITSFDDERKSLQGTLE-----LLSDSVLEYSIIPL---------PNAQTMLTFVNVTDS 548
           +I   DD RK L   L      L  D    ++ + L            + +    ++T+ 
Sbjct: 328 LIRFLDDARKGLTTKLSKEMRVLREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITEL 387

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R E  L +  +    +D +K++F+ ++S+E+R+PL  I+GF+ LL +++  +     + 
Sbjct: 388 KRTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSSLLTSTENAAEKELYNS 447

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            + + +     L+N   D++DL+ +++  ++L    + L +LL+E     A ++    + 
Sbjct: 448 LIGHNNKLLLNLIN---DVIDLSKIESAYLELRPDWVNLTELLDESVAEYAHQVPS-GVE 503

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +             D  R+ QI S  LSNA+  ++ G  V +    D+      VK+ G 
Sbjct: 504 LLTNYPAHDSLVELDSLRIKQILSNFLSNALKNTTTGH-VEVFYEVDHQSVRIGVKDTGR 562

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            IP++M + +F RF       Q  G GLGLSI +  +    G V + S     TT    +
Sbjct: 563 GIPQNMLEKIFERFEKLDSFAQ--GAGLGLSICKLIVEKMNGRVLVDSQLGIGTTFVIEL 620

Query: 789 PSK 791
           P +
Sbjct: 621 PCR 623


>gi|257059969|ref|YP_003137857.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
 gi|256590135|gb|ACV01022.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
          Length = 576

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 117/255 (45%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +   + +Q +++E 
Sbjct: 317 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLRLVLDG-MADDSQEQQEFLEE 375

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILD+A ++AG M L   ++ L +L   +      +     +     
Sbjct: 376 AHKSALHLLNLINDILDIAKIEAGKMDLEVGSVELAELFEAIDNFTLPQAQRKRLNYSSK 435

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---------GDFI 720
               L   V   + QRLLQ+   ++SNA+ F+  G   +  +  +           G   
Sbjct: 436 YPPTLTPIVLYGNYQRLLQVMLNLVSNAIKFTHDGGIDITAEIVKKKLYWRDREFPGMIK 495

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  +  +    +F +FV    +H     G GLGL+I +  +   GG V   S  
Sbjct: 496 VRVSDTGIGVALEKQAKLFEKFVQVDGSHSKAYGGTGLGLAISQKLVEAMGGQVEFYSMG 555

Query: 779 EG-VTTINCRIPSKE 792
           EG  +T+   +P ++
Sbjct: 556 EGLGSTVTFTVPLEQ 570


>gi|83944788|ref|ZP_00957154.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851570|gb|EAP89425.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
          Length = 577

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 6/244 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   + +      KA+  K+ F+ ++S+E+R+PL  ++G   LL+ ++   L+ +Q  YV
Sbjct: 187 ASHRIKDAYRQAEKANAAKSRFLANMSHEIRTPLNGVMGMAQLLEQTE---LDDRQRDYV 243

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +++S T L  L++D+LD++ ++AG ++L+ +     DLL     +IA++     + ++
Sbjct: 244 RMLNSSGTALRGLIDDVLDISRIEAGELELDDTPYRPADLLRNTADTIASQAASKKLTVE 303

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +    +L + V  D  R+LQI +    NA+ F+  G+  I     + G    SV + G  
Sbjct: 304 LDIAPELEALVAGDATRVLQILTNFAGNAVKFTDVGAIAISGRVLETGQMELSVSDTGPG 363

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D  KS+F RF         Q  G GLGL+I +    L GG + + S     +    R
Sbjct: 364 IAPDQVKSIFERFSQLDDSVGRQHEGAGLGLTIAQEIAVLAGGDIGVESELNAGSRFWVR 423

Query: 788 IPSK 791
           +P +
Sbjct: 424 LPHR 427


>gi|313887781|ref|ZP_07821463.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846390|gb|EFR33769.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 602

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/390 (22%), Positives = 166/390 (42%), Gaps = 34/390 (8%)

Query: 402 VIVTSNPRGGTIWM-FENLTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLS 459
           + V SN   G + M F  LT ++    +   L + + +TI ++++EGV       R+  +
Sbjct: 227 IEVKSNDEIGELGMMFNFLTKELRESIEKMDLERSKLDTIFNYMAEGVIAIDRKNRLIHA 286

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-L 518
           N   + +    E   +   ++++I      Y NE                   SL+G  L
Sbjct: 287 NSIAKKILNISEKDFNRVINLKSINLYNIDYKNEE------------------SLRGEEL 328

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             +++S  +    P  +   + + + +           +  +     D ++  FV +VS+
Sbjct: 329 TKIANSFYKIKYAPYKSDAFINSGLIIV---------LQDVDKEHMLDIMRKEFVANVSH 379

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++P+T I  +T+ L  S L   +  Q  +++ I   ++ +  +V D+L L+ +D    
Sbjct: 380 ELKTPITTIKSYTETLLDSDLDKKS--QRNFLKIIDRENSRMSRIVTDLLYLSNIDYNKD 437

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L  S+I   + + E  +S +  + + N +I++  D  +    ADR    QI + I+SNA
Sbjct: 438 NLTLSSIDTYEFIAEAIESQSILIVQKNHKIELNIDMDIKDIYADRSGADQILTNIISNA 497

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGL 756
             ++ +   +++ A          V +NG  IP++    +  RF         Q  G GL
Sbjct: 498 CKYTPENGKIVIDATNKGDLVEIKVTDNGIGIPKEDLPRITERFYRVEKGRSRQMGGTGL 557

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINC 786
           GLSI    I   GG + + S     TTI  
Sbjct: 558 GLSIANEMIKSFGGSLKVDSVFGEGTTITL 587


>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 733

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 10/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E  E   ++ + K  F+  +S+++R+P+  +IG   LL  SK   L+  Q      
Sbjct: 214 RELVEAKEIAEESVKTKAIFLASMSHDIRTPMNGVIGMLGLLMNSK---LDDTQKHQASL 270

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV- 671
             +S+  LL+L+NDILD + V+AG M L Y    + D L +  + IA +  E  + + + 
Sbjct: 271 AKSSAKALLSLINDILDFSKVEAGKMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELILE 330

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNG 727
           ++D +     AD  R+ QI S I+ N++ F+S+G      ++      +   I  + ++G
Sbjct: 331 VTDIEQNMIKADPGRIRQILSNIVGNSIKFTSEGFIAIKAILDVTEPTDARLIIEMSDSG 390

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPED   ++F+ F        R   G GLGL+IVE    L  G V + S     +   
Sbjct: 391 IGIPEDKIDTLFDSFSQVDASTTRKYGGTGLGLAIVEKLCELMNGKVEVKSDFGKGSIFT 450

Query: 786 CRI 788
             I
Sbjct: 451 IDI 453


>gi|163851098|ref|YP_001639141.1| histidine kinase [Methylobacterium extorquens PA1]
 gi|163662703|gb|ABY30070.1| Histidine kinase [Methylobacterium extorquens PA1]
          Length = 1937

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +N   +     +D L+E + +         +N     L K  +           + + 
Sbjct: 1117 ASFNRFSETHQSFLDQLTESIGIV---LNTIAANMRTEGLLKQSQLLTG------ELQSR 1167

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   +D  +L AA +   +D  K+ +  L+  ++ + E +   L   Q         
Sbjct: 1168 QEELKKTNDRLELQAASLQQSEDLLKNQRERLQQTNEELEEKA--RLLEIQKREVEGKNR 1225

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +   A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ
Sbjct: 1226 EVSIAKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQ 1285

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++ + I+A+ T LL+L+NDILDL+ +++G + L    + L D+   + ++      E +
Sbjct: 1286 REFAKTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERH 1345

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------- 717
            +   +  D  L  S   D +RL Q+   +LSNA  F+ KGS V LK     G        
Sbjct: 1346 LAFVIEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQ 1404

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                SV + G  I ED  + +F  F         +  G GLGL+I      L GG + + 
Sbjct: 1405 WIAMSVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVE 1464

Query: 776  SSDEGVTTINCRIPSK 791
            S     +T    +P +
Sbjct: 1465 SRVGTGSTFTLFLPFE 1480


>gi|197336014|ref|YP_002155471.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11]
 gi|121308572|dbj|BAF43671.1| bioluminescence regulatory protein [Vibrio fischeri]
 gi|197317504|gb|ACH66951.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11]
          Length = 744

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 135/273 (49%), Gaps = 17/273 (6%)

Query: 524 SVLEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +LE+  I     QT         DS +A+RA         K  ++K+ F+  +S+E+R+
Sbjct: 330 GILEFDQIGEKLEQTFSELIEAKEDSYKAQRA-------AEKLAQVKSDFLARMSHEIRT 382

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G + LLK+S   +LN +Q + V  +      LL ++NDILD + ++   +K+N 
Sbjct: 383 PLNGILGISSLLKSS---NLNREQQKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINS 439

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
           +   L+D+L  +           N+   + +      F+ +D+ RL QI   +LSNA+ F
Sbjct: 440 APFKLSDVLENINAIYFPICKNKNVFFSIENHVNPDVFINSDQVRLTQILFNLLSNAVKF 499

Query: 702 SSKGST-VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGL 756
           + KG   + L   + N D    FSV + G  I  +    +F  F  +  +   +  G GL
Sbjct: 500 TEKGKVKLTLSLNKHNSDYYLQFSVDDTGVGICAEEQARMFEPFEQSGFSESRKFGGSGL 559

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+IV+  ++L  G ++I+S+    +T +  IP
Sbjct: 560 GLAIVKQLLDLLKGKITINSTIGVGSTFSVLIP 592


>gi|240138280|ref|YP_002962752.1| hypothetical protein MexAM1_META1p1623 [Methylobacterium extorquens
            AM1]
 gi|240008249|gb|ACS39475.1| hypothetical protein MexAM1_META1p1623 [Methylobacterium extorquens
            AM1]
          Length = 1937

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +N   +     +D L+E + +         +N     L K  +           + + 
Sbjct: 1117 ASFNRFSETHQSFLDQLTESIGIV---LNTIAANMRTEGLLKQSQLLTG------ELQSR 1167

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   +D  +L AA +   +D  K+ +  L+  ++ + E +   L   Q         
Sbjct: 1168 QEELKKTNDRLELQAASLQQSEDLLKNQRERLQQTNEELEEKA--RLLEIQKREVEGKNR 1225

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +   A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ
Sbjct: 1226 EVSIAKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQ 1285

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++ + I+A+ T LL+L+NDILDL+ +++G + L    + L D+   + ++      E +
Sbjct: 1286 REFAKTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERH 1345

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------- 717
            +   +  D  L  S   D +RL Q+   +LSNA  F+ KGS V LK     G        
Sbjct: 1346 LAFVIEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQ 1404

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                SV + G  I ED  + +F  F         +  G GLGL+I      L GG + + 
Sbjct: 1405 WIAMSVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVE 1464

Query: 776  SSDEGVTTINCRIPSK 791
            S     +T    +P +
Sbjct: 1465 SRVGTGSTFTLFLPFE 1480


>gi|228967769|ref|ZP_04128785.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791923|gb|EEM39509.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 484

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ + P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQM-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + E  I I +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHSSPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTISSDNNKVIVKVIDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|254474100|ref|ZP_05087492.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
 gi|211956796|gb|EEA92004.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
          Length = 867

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R++T   +A   A++ K  F+  VS+ELR+PL  IIG  DL++ +K   L+ +Q    + 
Sbjct: 183 RSMTAAQQAAEAANKAKTQFLTAVSHELRTPLNAIIGMGDLIQDTK---LDPEQRDMAKT 239

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S + LL+++N ILD + +++G M +N +   +N +L EV Q +  +     + I   
Sbjct: 240 IQYSGSSLLSMINGILDFSRIESGRMIVNRTVFDMNSILREVTQIVQGQARGKGLIISRY 299

Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNG 727
            D KL  F V D + + ++   I  NA+ F+ +GS  +       NG     +  VK+ G
Sbjct: 300 VDSKLPPFLVGDARHIREVLLNIAGNAVKFTEEGSVSISATCKEMNGGKVSLLLEVKDTG 359

Query: 728 SSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ED    +F RF         +  G GLGLSIV   +   GG V +SS     +   
Sbjct: 360 IGISEDAQGRIFERFTQADESIVDRFGGTGLGLSIVREVVRAMGGEVKVSSQPGQGSMFT 419

Query: 786 CRI 788
             +
Sbjct: 420 IEL 422


>gi|229918112|ref|YP_002886758.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469541|gb|ACQ71313.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 463

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 5/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +       L    E+L   +E +  F+ +VS+ELR+PL+ I G+T++L+   L      +
Sbjct: 213 EIGELADTLNSMAESLGLVEEQRKEFLANVSHELRTPLSYIRGYTEMLQDETLDEKT--R 270

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +QY + I   +  L  LV D+LDLA ++     +    +V + +L +V   +        
Sbjct: 271 AQYYDIIENETNRLQRLVTDLLDLAQLERDSYPMTKEPVVYSQVLEDVLYRLEPIARAKG 330

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + I+   D  L   + D  RL Q+   +L NA+ ++  G T+ +K   +    I  +++ 
Sbjct: 331 VTIESDLDFDLI-ILGDHDRLEQVIGNLLDNALRYTDAGKTIHVKTFAETEYAITEIRDE 389

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP++    +  RF        R   G GLGL+I +  I  H G +  SS     TT+
Sbjct: 390 GRGIPKEDLDKLTERFYRVNKSRTRKDGGTGLGLAIAKHIIERHEGSLHFSSEVGQGTTV 449

Query: 785 NCRIPS 790
              +P 
Sbjct: 450 TVGLPL 455


>gi|83312635|ref|YP_422899.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947476|dbj|BAE52340.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 607

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/487 (17%), Positives = 185/487 (37%), Gaps = 43/487 (8%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D  +   F + SF  +  I    L    S D + E +        +++   W+ +I  + 
Sbjct: 144 DAEQRFTFFSSSFETVMNIMSDDLLGKRSWDIVSERM--------EIDSDQWQAHIADLT 195

Query: 383 KSSETHKDTWHLPNG--QTLHVIVTSNPRGGTIWMF-------ENLTVQVDLETKYNTLV 433
                    + L +G  +   + V   PR     +F        ++T  V+   + + L 
Sbjct: 196 AQRPFRDFKYWLEDGNGRARWIKVNGLPRFDDDGVFIGYRGTGSDITAAVENAHRMHMLN 255

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +     ++     + +   +  I+  N +F  +     + +        I        ++
Sbjct: 256 R----AVEQSPVSIVITDLNAEIQYVNSSFLRITGYSMDEV--------IGRNPRILRSD 303

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY---SIIPLPNAQTMLTFV-----NV 545
           +   + F  +  +     K     +       L +   +I P+ N + ++T       ++
Sbjct: 304 TTPPETFQNMWAALSAGEKWEGELINRRKSGELYWEQATIQPIQNIEGVITNYLAVKSDI 363

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T+  +A   L E  E LR+++E    F    S++LR PL  I  +  LL+     S +  
Sbjct: 364 TEQKKAAAKLAELVEELRRSNEELEQFAYVASHDLRQPLRMISAYLALLEKKLSASFDQD 423

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              +  +    +  L  ++ D+L+ + +  G +      + L ++++   + +   + E+
Sbjct: 424 ARDFFGFAIDGARRLDRMIVDLLEYSRI--GRITAPMEPVSLGEVVSNALRYLEVAVAES 481

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSV 723
                V+    L +   D   L+++F  +++NA+ +  +G    + +       +++  V
Sbjct: 482 GSE--VVVPDGLPTISGDGGELVRLFQNLIANAIKYMPEGRQPRIEVLCRAQGAEWVVGV 539

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           K+NG  IP D  K VF  F     R Q  G G+GL++       HGG + + S     +T
Sbjct: 540 KDNGIGIPPDDLKRVFGIFQRLVAREQFEGTGIGLAVCRKIAEHHGGRIWVESEMGVGST 599

Query: 784 INCRIPS 790
                P 
Sbjct: 600 FLVAFPK 606



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 109/320 (34%), Gaps = 32/320 (10%)

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           GR  G+        +  +  E    +L  + +      ++   ++     W  D      
Sbjct: 91  GRAEGAALQALRAEIGPLRKERDRLSLLSEVVKESSERYREYSEAAADWFWESDAEQRFT 150

Query: 217 WANISYKKNT-----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
           + + S++        +  G      + E  ++  ++ +  +   +A ++ F +    LE 
Sbjct: 151 FFSSSFETVMNIMSDDLLGKRSWDIVSERMEIDSDQWQAHIADLTA-QRPFRDFKYWLED 209

Query: 272 GNNKSYKI--------VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD 323
           GN ++  I               G  G   D++  +    ++      +    V+I I D
Sbjct: 210 GNGRARWIKVNGLPRFDDDGVFIGYRGTGSDITAAVENAHRMHMLNRAVEQSPVSIVITD 269

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW--------KTWK 375
            N  +Q+ N SF+ +    +  +            LRS    PE            + W+
Sbjct: 270 LNAEIQYVNSSFLRITGYSMDEVIGRNP-----RILRSDTTPPETFQNMWAALSAGEKWE 324

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             + +  KS E + +   +   Q +  ++T+      + +  ++T Q     K   LV+ 
Sbjct: 325 GELINRRKSGELYWEQATIQPIQNIEGVITN-----YLAVKSDITEQKKAAAKLAELVEE 379

Query: 436 QGETIDHLSEGVAVFGPDGR 455
              + + L +   V   D R
Sbjct: 380 LRRSNEELEQFAYVASHDLR 399


>gi|308271052|emb|CBX27662.1| hypothetical protein N47_H24840 [uncultured Desulfobacterium sp.]
          Length = 1019

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 170/377 (45%), Gaps = 28/377 (7%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           +     +Q + +D   +G+A+         +  A+       E        +R       
Sbjct: 201 FQEFTDMQKDFLDEAGKGIAIS------IYACEAYIRTRLLLEETQVQAGALRVQQEELR 254

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           +   E +   L    +   +++ K+ +  L+ ++  + E ++  L   Q         + 
Sbjct: 255 QTNQELEEQTL---ALGESEEKLKNQKNDLQQINTELEETAM--LLEKQKENIRKKNVEL 309

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             A+R + +K   L  A + K+ F+ ++S+ELR+PL +I+  + LL  +K G+L+ K  +
Sbjct: 310 EEAKRLIEQKARDLELASKYKSDFLTNMSHELRTPLNSILILSRLLSENKKGNLDQKNIE 369

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           + + I+ +   LL L+N+ LDLA V+AG M+ ++  + + DL + +K+       E  + 
Sbjct: 370 FAQTINGAGADLLKLINEALDLAKVEAGKMECSFEQLEIADLTDTLKRYFMAIAEEKGLI 429

Query: 669 IKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-------- 719
             +   DG    FV+DRQ++ QI   +LSNA  F+ KG T+ L   R +           
Sbjct: 430 FTINQKDGIPSGFVSDRQKVEQIIKNLLSNAFKFTEKG-TISLDVFRPDNTVDLTLYGLV 488

Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
                 FSV + G  IPED  +S+F  F         +  G GLGL+I      L GG +
Sbjct: 489 NKNTIAFSVSDTGIGIPEDKKQSIFEAFQQADGTTSRKYGGTGLGLTISRKMAKLLGGEI 548

Query: 773 SISSSDEGVTTINCRIP 789
           ++ +++   T     IP
Sbjct: 549 TLETTEGKGTVFTLYIP 565


>gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans]
 gi|133738036|emb|CAL61081.1| putative two-component sensor protein histidine kinase
           [Herminiimonas arsenicoxydans]
          Length = 560

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 128/290 (44%), Gaps = 20/290 (6%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-----RALTEKNEALRKADEIKNSFV 573
           EL    +L   I  L +   ++   N++  +  +       L+        A+  K+ F+
Sbjct: 134 ELTRQKLLTCIISALRSYDDIVALENLSRDLERQVLERTHDLSLAKNEAEAANRAKSEFL 193

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+P+  ++G   L         + +Q +Y+E    S+  LL ++NDILD + +
Sbjct: 194 AVMSHEIRTPMNGMLGMMQLALAQAS---DVEQREYLETAQYSAEALLTILNDILDFSKL 250

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFS 692
           ++G ++    T  L   ++ V + ++ +M    + +    D  L   +  D  RL Q+  
Sbjct: 251 ESGHLEFEAVTFDLPKAVDSVIELMSARMQGAALSLNAECDADLPRLLTGDVGRLRQVLL 310

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            ++ NA+ F+ +GS V LK  R           F+V ++G  I  +    +F  F    H
Sbjct: 311 NLIGNALKFTEQGS-VTLKIERLPASGTQIPLRFTVIDSGIGITAEEQTRLFQSFSQADH 369

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI---PSKE 792
              RR  G GLGLSI +  + +  G + + S+    +     +   P+ E
Sbjct: 370 SISRRFGGTGLGLSICKKIVEMQRGCIGVESTPGEGSRFWFELTFVPAPE 419


>gi|121997909|ref|YP_001002696.1| GAF sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
 gi|121589314|gb|ABM61894.1| GAF sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
          Length = 437

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 127/285 (44%), Gaps = 3/285 (1%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           D E  +LQ   E++ D           + +      +  +  R    L +  E   + + 
Sbjct: 141 DAELATLQELAEVVVDEFELRRANQRLDEERARAERSAIELRRINLELQQAREEAERGNR 200

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+ELR+PL  ++GF  +L+      L+ +Q+ YV+ I      LL+L++DI
Sbjct: 201 AKSQFLSSMSHELRTPLNAVLGFAQILEQDPREPLSERQAGYVDQILGGGRHLLSLIDDI 260

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
           LDL+ V+AG ++L    +    L+++  + +     +  + + V +++    S   D +R
Sbjct: 261 LDLSRVEAGRVELKPEWVAPGLLVDQCAELLGPMATDAGVHLSVYVAEAVPASIWVDPRR 320

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS- 744
           + Q+   + SNA+ ++     V ++          F V++ G  I E+  + VF  F   
Sbjct: 321 IRQVLFNLASNAVKYNRPDGRVEVEVEAPAPDRIRFRVRDTGIGIREERQREVFYPFNRL 380

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +  G G+GL +    +   GG +  SS+    +     +P
Sbjct: 381 GLESSEVEGTGIGLVVTRRLVEQMGGEIGFSSAPGVGSVFWVDLP 425


>gi|326801633|ref|YP_004319452.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
 gi|326552397|gb|ADZ80782.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
          Length = 575

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 164/400 (41%), Gaps = 27/400 (6%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPDG 454
            V   SN   G +    N+  +   E   + L ++  E       I+++ + V     + 
Sbjct: 191 RVHFESNNEFGELAHSFNIMAEKLEEYAGSNLSRLLMEKKRIETLINNMHDPVIGLDENQ 250

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIR-----NIAATCSRYYNESDGWDLFAAIITSFDD 509
            +  +N     +   ++  +     I      ++    ++  N  +        I  F D
Sbjct: 251 VVIFTNNEALQIVGFKKEEVIGKKIIELALYNDLLRLLAKDLNLQETKPTKKEPIKIFAD 310

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
            ++S             E   IP+    T  T       V   + +T   E     D  K
Sbjct: 311 GKESF-----------FEKEHIPINIVPTGETRPQFIGHVIMLKNITPFREL----DLAK 355

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +F+  VS+EL++P+++I    +LL     GSLN++Q Q V  I+  S  LL +  ++L+
Sbjct: 356 TNFIATVSHELKTPISSIKMSLELLNNKLTGSLNNEQQQLVAGIAEDSNRLLRITGELLN 415

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           ++ V+ G ++LN       ++L+    ++ T      I   +  +  L +   D ++   
Sbjct: 416 MSQVETGNIQLNLRQSKPEEILHYALSAVQTAADHKMIHFDLQVEDPLPNVKVDPEKTAW 475

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + +  LSNA+ +S +  T+I+    +     FSVK+NG  I E   + +F R+       
Sbjct: 476 VLTNFLSNAIRYSPEQGTIIISIRLEAKVLRFSVKDNGRGIDERYTQRIFERYFQIPGS- 534

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            R G GLGL+I + FI   GG + + S+    +T     P
Sbjct: 535 NRSGSGLGLAISKEFIEAQGGEIGVESALGIGSTFYFSFP 574


>gi|322376760|ref|ZP_08051253.1| sensory box histidine kinase VicK [Streptococcus sp. M334]
 gi|321282567|gb|EFX59574.1| sensory box histidine kinase VicK [Streptococcus sp. M334]
          Length = 449

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 141/380 (37%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLHSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   I     D   S     E LS  V  ++++   
Sbjct: 135 LNKSILELL-----KIADEYELRDLITQIPELMID---SQDANGEYLSLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALS--EPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVT 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|295083983|emb|CBK65506.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 660

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 128/259 (49%), Gaps = 11/259 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     +      +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+  S
Sbjct: 403 TQQLREDKKKLEESEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLIIGS 462

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N +  +Y + +  +S +LL L++D+LD++ +++G ++ NY      +L+N  +  
Sbjct: 463 VEQ--NDELKEYADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWC---ELVNHCQNM 517

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           I         ++ IK+    +      D  RL QI   +L+NA+ F+  G ++ L    D
Sbjct: 518 ITLTNRNKTVDVDIKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVD 577

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +FSV + G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + 
Sbjct: 578 EEKQCMLFSVTDTGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIW 635

Query: 774 ISSSDEGVTTINCRIPSKE 792
           I  S +         P K+
Sbjct: 636 IDKSYKNGARFIFSHPIKK 654


>gi|254560791|ref|YP_003067886.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4]
 gi|254268069|emb|CAX23941.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4]
          Length = 1937

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +N   +     +D L+E + +         +N     L K  +           + + 
Sbjct: 1117 ASFNRFSETHQSFLDQLTESIGIV---LNTIAANMRTEGLLKQSQLLTG------ELQSR 1167

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   +D  +L AA +   +D  K+ +  L+  ++ + E +   L   Q         
Sbjct: 1168 QEELKKTNDRLELQAASLQQSEDLLKNQRERLQQTNEELEEKA--RLLEIQKREVEGKNR 1225

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +   A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ
Sbjct: 1226 EVSIAKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQ 1285

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++ + I+A+ T LL+L+NDILDL+ +++G + L    + L D+   + ++      E +
Sbjct: 1286 REFAKTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERH 1345

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------- 717
            +   +  D  L  S   D +RL Q+   +LSNA  F+ KGS V LK     G        
Sbjct: 1346 LAFVIEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQ 1404

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                SV + G  I ED  + +F  F         +  G GLGL+I      L GG + + 
Sbjct: 1405 WIAMSVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVE 1464

Query: 776  SSDEGVTTINCRIPSK 791
            S     +T    +P +
Sbjct: 1465 SRVGTGSTFTLFLPFE 1480


>gi|167768191|ref|ZP_02440244.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1]
 gi|167709715|gb|EDS20294.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1]
 gi|291560213|emb|CBL39013.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 982

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 143/266 (53%), Gaps = 11/266 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N + +L   + T   +  +AL++   A   A++ K++F+ ++S+++R+P+  IIGFT L 
Sbjct: 437 NKKYILVMSDRTADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTLA 496

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++           Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+++
Sbjct: 497 VSNI--DNKKMVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDL 554

Query: 655 KQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K  I+ ++H   + + + + D        D+ RL QI   +LSNA+ F+  G  + ++  
Sbjct: 555 KTIISGQIHAKQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVRLK 614

Query: 714 ------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFI 765
                 R+   +   VK+NG  + ED  + +F+ F         + +G GLG++I ++ +
Sbjct: 615 QYPGTQRERQLYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQGTGLGMAITKNIV 674

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ GG++ I +     T    R+P +
Sbjct: 675 DMMGGNIEIQTEQGKGTEFIVRLPLR 700


>gi|170287881|ref|YP_001738119.1| histidine kinase [Thermotoga sp. RQ2]
 gi|281411517|ref|YP_003345596.1| histidine kinase [Thermotoga naphthophila RKU-10]
 gi|170175384|gb|ACB08436.1| histidine kinase [Thermotoga sp. RQ2]
 gi|281372620|gb|ADA66182.1| histidine kinase [Thermotoga naphthophila RKU-10]
          Length = 492

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 159/387 (41%), Gaps = 47/387 (12%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
             + EN+ +  +LE  YN +       ++ L EG+ V+  +G IK  N  F+     +E 
Sbjct: 133 AIVLENIKLYRELEETYNYVN----VILNGLPEGIFVYS-NGEIKFQNEKFKEENFPDEV 187

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                +      +  ++   E    + F +I                         + IP
Sbjct: 188 LKKAISLSEEAISLRTQRVGEVISGEEFFSI-------------------------TSIP 222

Query: 533 LPNA---QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           L      Q +    NVT+S   ER        L++ D +K  F+ ++S+ELR+PLT I  
Sbjct: 223 LALGSEIQALTIVENVTESKELER--------LKRIDRMKTEFIANISHELRTPLTAIKA 274

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           + + +  S      S   +++E I   S  L NL+N++LD + ++   +++N   + L D
Sbjct: 275 YAETVYNSLEELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCD 334

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST- 707
           L+     +I      +N+ +   S+         D  R+ Q+   +L N + +S K +  
Sbjct: 335 LVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLDNGVKYSKKDAPD 394

Query: 708 --VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             V +     +G  +  V++NG  IP+     +F +F            G GLGL+I + 
Sbjct: 395 KYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKE 454

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            + LHGG + + S     +     IP 
Sbjct: 455 IVELHGGRIWVESEVGKGSRFFVWIPK 481


>gi|325287849|ref|YP_004263639.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
 gi|324323303|gb|ADY30768.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
          Length = 495

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 105/224 (46%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D ++   + +VS++LR+PL  + G+ + L+  K      ++ +Y++    +   L NL+N
Sbjct: 270 DTLRRELIANVSHDLRTPLAILKGYVETLQIKKDTLTEVQKDEYLQITHNNIDRLSNLIN 329

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            + + + +++  +        + +L  ++ +       +  I +++ +  +     AD  
Sbjct: 330 QLFEYSKLESEQVTPVKEPFSITELSYDLIEKFKVIAEKKQITLQMDASNENNFVYADVS 389

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            + +    +L NA+ ++     V L   +       ++ + G+ IP +    +F+R+   
Sbjct: 390 MVERALQNLLENAIKYTEPNGKVTLAIKKQAKKVEINITDTGAGIPINEQPYIFDRYKQL 449

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               ++RG GLGL+IV+  + +H   +++ S  +  +T +  +P
Sbjct: 450 DKSEKKRGAGLGLAIVKKIMEMHDTTITVLSKPKEGSTFSFTLP 493


>gi|229512689|ref|ZP_04402157.1| sensor histidine kinase [Vibrio cholerae TMA 21]
 gi|229350199|gb|EEO15151.1| sensor histidine kinase [Vibrio cholerae TMA 21]
          Length = 1145

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 174/422 (41%), Gaps = 38/422 (9%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 715  RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKIANETLEERVLQRTLELEKLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 775  LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L++D+LD++ +++G + ++  +  + D+L+ +    +    +  ++  ++  
Sbjct: 835  GAAE---DLISDLLDISRLESGKIDIHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  ++ +G  V+L   R  G     V +NG  I +D 
Sbjct: 890  PSSLWVHSDPKLLRRVIQNFLTNAFRYNPQG-KVVLGVRRVAGQVRIDVWDNGIGIEQDK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI----PS 790
             + +F  F         +G+GLGL+I +   ++ G  +S+ S     +  +  +    PS
Sbjct: 949  QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPRQGSVFSLTLERAEPS 1008

Query: 791  KE 792
            ++
Sbjct: 1009 QQ 1010



 Score = 77.7 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKIANETLEE 759


>gi|16904151|gb|AAL30777.1|AF435819_3 histidine kinase [Rhodobacter sphaeroides]
          Length = 733

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 198/515 (38%), Gaps = 36/515 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSF-VELWEIDLAFLATNPSNDELLEFLRSAN- 363
            +    +  +    A+FD +  L   N  F + + +I    L    S    ++ +  +  
Sbjct: 87  QNLANAIETVQEGFALFDADDVLVLCNLRFGMHMLDI-QEHLRPGLSFGGYIDRVSRSRY 145

Query: 364 -KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             LPE    + W       +    +  +   + + + L V       GGT+ +  ++T  
Sbjct: 146 LALPEAETPEDWAVRRKRRHYDRHSIFNVRLIWD-RWLQVSEHRTADGGTVILQTDVTDL 204

Query: 423 VDLET-----KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + +E        +   +V   T+DH+++GV +F  +GR+   N    SL     NR   G
Sbjct: 205 IRIERLERGKMLDDQARVIRATLDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRLG 264

Query: 478 THIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                +    +   +  +G D            ER  L   L    + +L+     +P+ 
Sbjct: 265 VSFGYLLERFAHEISFGEGMDAAHLEAWVQARHERAPLSFELRRHDELILDVFAQEMPDR 324

Query: 537 QTMLTFVNVTDSVRAERALTEKNE------------------ALRKADEIKNSFVQHVSY 578
             +++F +VT    A  AL+  NE                     +A+  ++ FV   S+
Sbjct: 325 GFVMSFTDVTAERAAIEALSRANETLEARVMERTLELEDALGHAERANASRSRFVAAASH 384

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L  PL+    F   +    +     +  + +     +   +  ++  +LD++ +++G  
Sbjct: 385 DLLQPLSAAKLFIATIGDEAVA---PESREALTKAQKALDSVEGILGALLDISKLESGRA 441

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            ++   + L+ L+ E+    A       +R+ V+    +    +D   L +I   ++ NA
Sbjct: 442 AVSIQPVRLDRLMEELSDEFAPIAAARGLRLTVLPSSAV--VASDPTYLRRILQNLIGNA 499

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLG 757
           + +++KG  V++ A    G     V + G  I E   +++F  F           G+GLG
Sbjct: 500 IRYTAKG-RVLVGARMTAGMVRLEVWDTGPGIAEADQEAIFKEFHRLDAPASPAEGMGLG 558

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L+IVE    L G  + + S     T    ++P  E
Sbjct: 559 LAIVERACGLLGHPLGLRSEIGRGTCFMLQVPRAE 593



 Score = 70.7 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 94/332 (28%), Gaps = 23/332 (6%)

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR-VLNSFGEAGIAIDVSK 297
              +  ++   +R          F   +       ++  ++        G   +  DV+ 
Sbjct: 149 PEAETPEDWAVRRKRRHYDRHSIFNVRLIW-----DRWLQVSEHRTADGGTVILQTDVTD 203

Query: 298 EITVND---------QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            I +           Q       L ++   + IFD    L   N+    L  I +     
Sbjct: 204 LIRIERLERGKMLDDQARVIRATLDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRL 263

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             S   LLE         E ++    +  + + ++ +          +   L V     P
Sbjct: 264 GVSFGYLLERFAHEISFGEGMDAAHLEAWVQARHERA-PLSFELRRHDELILDVFAQEMP 322

Query: 409 RGGTIWMFENLT-VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
             G +  F ++T  +  +E        ++   ++   E   +    G  + +N +     
Sbjct: 323 DRGFVMSFTDVTAERAAIEALSRANETLEARVMERTLE---LEDALGHAERANASRSRFV 379

Query: 468 KTEENRLSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDS 524
               + L        +  AT        +  +       + D     L   L++  L   
Sbjct: 380 AAASHDLLQPLSAAKLFIATIGDEAVAPESREALTKAQKALDSVEGILGALLDISKLESG 439

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
               SI P+   + M    +    + A R L 
Sbjct: 440 RAAVSIQPVRLDRLMEELSDEFAPIAAARGLR 471


>gi|295703363|ref|YP_003596438.1| two-component sensor histidine kinase KinE [Bacillus megaterium DSM
           319]
 gi|294801022|gb|ADF38088.1| two-component sensor histidine kinase KinE [Bacillus megaterium DSM
           319]
          Length = 726

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/595 (15%), Positives = 227/595 (38%), Gaps = 49/595 (8%)

Query: 210 DQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           D+ G ++ AN S+ +    T   +  K + E  +       K++  +   E      +  
Sbjct: 167 DRTGQLIDANPSFCERLNYTRAQLLTKTLEELVEPTYHYKVKKLWRTLHQEGKTSGELPI 226

Query: 269 -LEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAI 321
            LE+G+   ++     N + +  ++I  DV+++  +  QL  + +    I  N   AI I
Sbjct: 227 RLENGDVTFFEFTTTANIYSQYYMSIMRDVTEKRLMEQQLLRSEKNFRAIFENAIEAILI 286

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           +  +  +   N +    +E+ L  L        L  F+       +  ++   K      
Sbjct: 287 WRDDGEILNANLASSRTFELPLNKLIG----SNLYTFI-------DTKSFSALKVLQTFQ 335

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
            K    ++  +++PNG+   +  T       G  + +F N++ +  +E +     +   +
Sbjct: 336 TKGEIRNQLPFYMPNGEIKQLEFTGKKGIIEGDHLTIFRNISERTKIEQELRNNEEKFRQ 395

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             +   +G+ ++     I   N +   + +  +               C+    +     
Sbjct: 396 IFNGSIDGLVLWDGKRNIIDVNSSLCDILELSK------------EEICAHSMEDFISSA 443

Query: 499 LFAAIITSFD--DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
              A+I   +  +++   +G +  ++ +    +I        +            ER   
Sbjct: 444 NLDAVIEHKETIEQKGEAEGEITYVTGNEKVKNIEFSTKKDILPGLYMTLLRDVTERNQM 503

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           ++        ++       +++E+R+P+T + GF  LL++    S+    S Y + I + 
Sbjct: 504 QEQIRKSDTLQVVGQLAAGIAHEIRNPMTALKGFVQLLES----SIQEDHSLYFDIIKSE 559

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              +  ++ + L LA   A    + +    L  ++ E    +  +    NI+ ++    +
Sbjct: 560 LKRIETIITEFLVLAKPQA----VKFEKKNLAAVVKETIDLLNAQALLENIQFELSVSPQ 615

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMC 735
           L     +  ++ Q+   ++ NA++ +S G  +I++       ++  S+++ G  +PE+  
Sbjct: 616 LPMVYCEPNQIKQVLINVIKNAIEVTSNGGRIIVEVYSTEPHYVTVSIRDQGDGMPEERI 675

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           K +   F       + +G GLGL +    I  H G + + S     T  +  +P+
Sbjct: 676 KRLGEPFY----TTKEKGTGLGLMVSYKIIEEHKGRIEVESKIGEGTAFHVILPA 726



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 93/265 (35%), Gaps = 21/265 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E     +L     I +++  AI +FD+   +   N S   L+E     L T     ++
Sbjct: 18  EAEQKQQGELQQLRAIFNDVLDAIVVFDEYFQVINANESACGLFEKTKDELLT----YQM 73

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGG 411
            +FL        +  +    E  +  Y+ +        L +G   HV  TS+      G 
Sbjct: 74  KDFLMYFPYDMIEAYYPALLEESYFKYEGA------MTLRSGMMKHVEFTSHKHSHMSGI 127

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +  F ++T    +E +      +  +  +   +G+ +F   G++  +NP+F        
Sbjct: 128 IVCTFRDITQHKMMENERFISHHMFMDVFNEAVDGIVIFDRTGQLIDANPSFCERLNYTR 187

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
            +L     +  +      Y  +     L     TS +     L   LE    +  E++  
Sbjct: 188 AQLLT-KTLEELVEPTYHYKVKKLWRTLHQEGKTSGE-----LPIRLENGDVTFFEFTTT 241

Query: 532 P-LPNAQTMLTFVNVTDSVRAERAL 555
             + +   M    +VT+    E+ L
Sbjct: 242 ANIYSQYYMSIMRDVTEKRLMEQQL 266



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 107/289 (37%), Gaps = 30/289 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           I  ++ E  L  ++L      F+ +F++    +      G+IL AN++  +  E   +  
Sbjct: 252 IMRDVTEKRLMEQQLLRSEKNFRAIFENAIEAILIWRDDGEILNANLASSRTFE---LPL 308

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----EHGNNKSYKIV--RVLNSFG 287
            K IG +   F +      +      +   E  + L     +G  K  +    + +    
Sbjct: 309 NKLIGSNLYTFIDTKSFSALKVLQTFQTKGEIRNQLPFYMPNGEIKQLEFTGKKGIIEGD 368

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDL 343
              I  ++S+   +  +L +  E    +       + ++D  R +   N S  ++ E+  
Sbjct: 369 HLTIFRNISERTKIEQELRNNEEKFRQIFNGSIDGLVLWDGKRNIIDVNSSLCDILELSK 428

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             +  +     + +F+ SAN            E+  ++ +  E   +  ++   + +  I
Sbjct: 429 EEICAH----SMEDFISSANLD-------AVIEHKETIEQKGEAEGEITYVTGNEKVKNI 477

Query: 404 VTSNPR----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             S  +    G  + +  ++T +  ++ +      +Q   +  L+ G+A
Sbjct: 478 EFSTKKDILPGLYMTLLRDVTERNQMQEQIRKSDTLQ--VVGQLAAGIA 524


>gi|310826218|ref|YP_003958575.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612]
 gi|308737952|gb|ADO35612.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612]
          Length = 795

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 103/502 (20%), Positives = 196/502 (39%), Gaps = 34/502 (6%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L +++V+  + D++  L + N  + EL   D          + L +   + ++  E    
Sbjct: 22  LMHVSVSKHLLDEHFTLVWANEFYYELIGWDKDEYEAR--YNNLCDTYYADDQ-EELAKL 78

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRGGTIWMFENLTVQVDLET 427
                +     K   TH       +G+ + V + +        G    +  +T   DL  
Sbjct: 79  TEVVMDAIEGSKGGYTHISHMPKKDGEYVWVRMVATFADEYIDGYQVSYTVMTDINDL-- 136

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDG----RIKLSNPAF-----RSLWKTEENRLSPGT 478
               + K Q  T + L   VA F  D      +  +N  +        W T  + L    
Sbjct: 137 --VLMQKAQTVTYNALPGFVAKFHIDKDFGLTLLEANARYTAFFGDDCWDTGADPLFLQN 194

Query: 479 HIRNIAATCSRYYNESDGWDLFAAI-ITSFDDERKSLQGTLELLSDSVLE--YSIIPLPN 535
           + +N  A  +       G  +   + +   D     LQ     +     E  Y  I +  
Sbjct: 195 YAQNQQAIEASREKILSGQPISLGLTVKGVDGREARLQVNASCVDWQNQEPIYLAIFIDI 254

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                              L E   A  +A   K+ F+  +S+++R+P+  I+G T++ +
Sbjct: 255 TDVTELREMQQKLEAQAAELKEALTAAEQASRAKSDFLSSMSHDIRTPMNAIVGMTEIAR 314

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    +    ++ I+ SS  LL L+ND+LD++ +++G M L+ S   L D +  + 
Sbjct: 315 IHLDDP--GRVENCLDKIALSSQHLLGLINDVLDMSAIESGSMALSNSAFSLPDFMENIV 372

Query: 656 QSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--- 711
             I     E    + + + G +     AD  RL QIF  ILSNA+ F+ +  ++ L    
Sbjct: 373 AIIQPAAAEKRQHLFIRTFGVEHEHLYADPLRLKQIFINILSNAVKFTPEEGSITLTLEE 432

Query: 712 --AARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFIN 766
             AAR+  G F F+  + G  + +     +F+ F         +  G GLG++I +  ++
Sbjct: 433 FPAAREGCGQFRFTFADTGMGMTDAFMTHIFDSFTRERDSRVDKTEGSGLGMAITKRIVD 492

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           + GG +++ S++   +T    +
Sbjct: 493 MMGGRITVRSAEGKGSTFVVYL 514


>gi|303326366|ref|ZP_07356809.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302864282|gb|EFL87213.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 885

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/407 (21%), Positives = 173/407 (42%), Gaps = 26/407 (6%)

Query: 398 QTLHVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           + + ++VT    G  IW+      L  + + E  Y  ++        ++ +   +    G
Sbjct: 205 RAVSILVTLLMGGLIIWLIVYTNKLERKKNREIAYREMLFNLLAA--NIDDVFFISNGRG 262

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
             +  +P  + +       L          A  +   NE        + +    +    L
Sbjct: 263 SFEYVSPNSKRIIGFSSEELCQDN--DKFYALLTPELNEWLRTVFSDSALRGPVERAAEL 320

Query: 515 QGTLELLSDSVLEYSIIPLPN----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            G     S    +  + P+       + ++   + TD++  ++ L++  EA R A+  K+
Sbjct: 321 AG-----SRRQFKVRVYPVYQNGALERQIMVLTDQTDTLMYQQTLSDALEAARGANAAKS 375

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ H+S+E+R+P+  IIG T +  +        +    +  I+ SS  LL L+ND+LD+
Sbjct: 376 NFLSHMSHEIRTPMNAIIGMTTIALSRL--DDRGRLEDCLGKIAQSSRHLLGLINDVLDM 433

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQ 689
           + ++ G + + +    L   L  +   I  ++ E     +V +S+        D  RL Q
Sbjct: 434 SKIERGRLSIAHEPFNLRLSLQGIVNLIQPQIQEQGQNFEVSLSEVDEEELNGDGMRLNQ 493

Query: 690 IFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           I   ILSNA+ F+ KG ++ L   +     +N  F F +++ G  + E+    ++  F  
Sbjct: 494 ILINILSNAVKFTPKGGSIRLDIRQLHKNHNNVRFRFIIRDTGIGMSEEFISRLYMPFEQ 553

Query: 745 N--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              A   Q  G GLG++I ++ ++L GG +S+ S +   T     +P
Sbjct: 554 ATAATASQFGGTGLGMAITKNLVSLLGGMISVKSKEGKGTEFTVELP 600


>gi|158333452|ref|YP_001514624.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158303693|gb|ABW25310.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 788

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 159/373 (42%), Gaps = 12/373 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   E    + V      I+ + + +  F  DG     N      +K   N   P  
Sbjct: 423 IVERQRAEAALQSSVATNRALINAMPDWMFRFSADG--IFVN------YKDAPNTKLPLP 474

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDS-VLEYSIIPLPNA 536
               +  +    + ++        I  + D  E +  +   +   +S V E         
Sbjct: 475 SEAFLGKSLYDVFPKATAQPFMECIEKTLDRHEMQLFEYQFDAEGNSFVFEARFAVSAEN 534

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + M    ++T+  RAE  +       R+ +E+K+ FV   S+E R+PL  I+   +LL+ 
Sbjct: 535 EVMAVIRDITERKRAEDDIRNALNKERELNELKSRFVAMTSHEFRTPLATILSSAELLEH 594

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  +++ +++  I  S   +  L+ND+L L   ++G +  N   + L +    + +
Sbjct: 595 YGHKWDETRKLKHLSQIQQSVDHMTGLLNDVLLLGKAESGNLAFNPVPMQLTEFCTGLAE 654

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +      + I  ++    +L     D + L  IF+ +LSNA+ +S +G  +      ++
Sbjct: 655 ELQITTQTHEIVCRLQ--EQLTEVQMDEKLLRHIFTNLLSNAIKYSPQGGIINFDLVFES 712

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
            + I  V+++G  IP   C  VFN F    + G   G GLGL+IV+  ++LHGG ++++S
Sbjct: 713 DEAILKVQDHGLGIPPSECSHVFNSFNRATNVGNISGTGLGLAIVKRSVDLHGGEITLTS 772

Query: 777 SDEGVTTINCRIP 789
            +   T    R+P
Sbjct: 773 QETVGTIFTVRLP 785


>gi|298481097|ref|ZP_06999291.1| two-component sensor histidine kinase [Bacteroides sp. D22]
 gi|298272671|gb|EFI14238.1| two-component sensor histidine kinase [Bacteroides sp. D22]
          Length = 660

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 128/259 (49%), Gaps = 11/259 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     +      +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+  S
Sbjct: 403 TQQLREDKEKLEESEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLIIGS 462

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N +  +Y + +  +S +LL L++D+LD++ +++G ++ NY      +L+N  +  
Sbjct: 463 VEQ--NDELKEYADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWC---ELVNHCQNM 517

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           I         ++ IK+    +      D  RL QI   +L+NA+ F+  G ++ L    D
Sbjct: 518 ITLTNRNKTVDVDIKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVD 577

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +FSV + G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + 
Sbjct: 578 EEKQCMLFSVTDTGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIW 635

Query: 774 ISSSDEGVTTINCRIPSKE 792
           I  S +         P K+
Sbjct: 636 IDKSYKNGARFIFSHPIKK 654


>gi|237714586|ref|ZP_04545067.1| two-component sensor histidine kinase [Bacteroides sp. D1]
 gi|262406452|ref|ZP_06083001.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22]
 gi|294643706|ref|ZP_06721506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807338|ref|ZP_06766150.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229445355|gb|EEO51146.1| two-component sensor histidine kinase [Bacteroides sp. D1]
 gi|262355155|gb|EEZ04246.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22]
 gi|292640944|gb|EFF59162.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294445468|gb|EFG14123.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 660

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 128/259 (49%), Gaps = 11/259 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     +      +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+  S
Sbjct: 403 TQQLREDKEKLEESEIELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLIIGS 462

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N +  +Y + +  +S +LL L++D+LD++ +++G ++ NY      +L+N  +  
Sbjct: 463 VEQ--NDELKEYADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWC---ELVNHCQNM 517

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           I         ++ IK+    +      D  RL QI   +L+NA+ F+  G ++ L    D
Sbjct: 518 ITLTNRNKTVDVDIKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVD 577

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +FSV + G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + 
Sbjct: 578 EEKQCMLFSVTDTGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIW 635

Query: 774 ISSSDEGVTTINCRIPSKE 792
           I  S +         P K+
Sbjct: 636 IDKSYKNGARFIFSHPIKK 654


>gi|307244128|ref|ZP_07526246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492499|gb|EFM64534.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptostreptococcus stomatis DSM 17678]
          Length = 426

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 148/366 (40%), Gaps = 22/366 (6%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +   +     I  +S G+ V   + R+ L N   R       +    G  I +I     
Sbjct: 81  LDNKNRQLDAIIKSVSNGIIVIDINKRVYLINSVARDYIDFRSSGKLEGMPISSIVK--- 137

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                    D     I        S+   ++  S  + +  I P+             D 
Sbjct: 138 --------NDELLDFIVYNAGMSTSVSKEIKDTSGRIFKVKIDPVK-------MHLEKDL 182

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           V +     E      + + I+  F  +VS+EL++PLT+I GF + LK +     ++ + +
Sbjct: 183 VISSVINIEDISERIRLENIRRDFAANVSHELKTPLTSIQGFIETLKVNDDNIESATRKR 242

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ I   S+ L  L+NDIL L++++ G + L+   + L     ++      KM +  + 
Sbjct: 243 FLDIIDNESSRLRILINDILMLSSIE-GDIVLSLEKVDLKKENKKILDLFEDKMVKKQVN 301

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I    +G L +    R+   ++   ++SNA+ ++  G  V +    D  D+   +++NG 
Sbjct: 302 IYFEYNG-LETIQTHREYYKELMINLISNAIKYNRPGGYVKVSFFEDEDDYRICIEDNGI 360

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I  +  + +F RF        +   G GLGL+IV+  I   GG + + S     +    
Sbjct: 361 GIGVEEQERIFERFYRVTKSRNKEIDGTGLGLAIVKHIILSLGGDIGLESVLGQGSKFKI 420

Query: 787 RIPSKE 792
            +P  +
Sbjct: 421 SLPKNQ 426


>gi|262392977|ref|YP_003284831.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|262336571|gb|ACY50366.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 1055

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 165/414 (39%), Gaps = 34/414 (8%)

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 508 LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 567

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            +  L++     +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 568 RYLELFEFPPGLIQVGRPIADVIRHNAEQGLCGPGDPDDHVRRRVYHLEQGTRHTSSRV- 626

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI----------- 568
                V+E    P+P    +++F ++T    AE+AL + NE L +   +           
Sbjct: 627 RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANETLEERVRLRTRELEQLNKQ 686

Query: 569 --------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                         K+ F+  VS++L  PL     F   L      S   K S ++E   
Sbjct: 687 LVAATQRSDLESKSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDSEAKKLSAHIESAL 746

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++    +L+ D+LD++ +++G +++N     LND+L+ +    +    +  I   +I  
Sbjct: 747 EAAE---DLIGDLLDISRLESGKLEVNVHGFALNDVLSNLNAEFSALAKQQGIAFTMI-- 801

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  +D + L ++    L+NA  ++  G  V L   R  G     V +NG  I E+ 
Sbjct: 802 PSSLMVKSDPKLLRRVVQNFLTNAFRYNPNG-KVALGVRRVKGRVRIDVWDNGVGIEEEK 860

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 861 QQEIFEEFNRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWVGKGSVFSITL 914



 Score = 81.1 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 528 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 587

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             +            +    H  +   P+G+ + V     P GG +
Sbjct: 588 DVIRHNAEQGLCG-PGDPDDHVRRRVYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 646

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 647 MSFTDITVFRDAEQALKDANETLEE 671


>gi|254438509|ref|ZP_05052003.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198253955|gb|EDY78269.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 477

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 122/252 (48%), Gaps = 2/252 (0%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  +VN  + +   + + E+NE  + A E+K+ F+  VS+ELR+PLT+IIG  +L+K   
Sbjct: 198 VKFYVNQQERLEQMKLIQEENERTKAALEVKSQFLSTVSHELRTPLTSIIGSLELIKADP 257

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
            G L       +   + ++  L  L++D+LDL  ++AG M  ++  +  NDL+ E  +S 
Sbjct: 258 RGLLPDNLKPMIGIAARNAQRLAALIDDLLDLQKIEAGEMAFHFKPVDANDLVYEAVEST 317

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           A    +  I +     G+      DR RL+Q+ S +LSNA+ FS KG  V ++    +  
Sbjct: 318 AGYASKLGIHVTTAPCGEDCQIAGDRNRLVQVMSNLLSNALKFSDKGGAVKVRVETLSTR 377

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
              SV + G  IP      VF +F         +  G GLGL+I +  I  H G V   S
Sbjct: 378 IRISVHDEGVGIPRGAKDCVFGKFSQVDSSDARKVGGTGLGLNITKQIIGRHNGTVDYVS 437

Query: 777 SDEGVTTINCRI 788
                +T     
Sbjct: 438 ELGVGSTFYIEF 449


>gi|159897332|ref|YP_001543579.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890371|gb|ABX03451.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 399

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 151/382 (39%), Gaps = 49/382 (12%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           +N L +     +D    GV V      I+  N     L+    N +   + I  +     
Sbjct: 47  FNQLFRTLSAALDA---GVIVVNDGRTIRYCNDVAAKLFGVSANAVVNHSVITLV----- 98

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
               +     +    I   D ++ +LQ    +LS+  +     PLP +  ++   ++T  
Sbjct: 99  ---RDYQADTMIEQSIRRRDPQQVTLQ---PVLSNRTIRIWCEPLPESGALILARDLTQL 152

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              ERA              +   V +VS+ELR+PL +I    + L T     L     +
Sbjct: 153 SLLERA--------------RRDLVANVSHELRTPLASIKLLVETLATQPPPEL---AQR 195

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +  +      ++ LV+++ +L+ +++G   L      + D++      I  +    ++R
Sbjct: 196 MLGQVDTELDAVMQLVDELHELSQIESGRTALQLQPTPVEDIVERANDRIQPQAKRKDLR 255

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---------------- 712
           + V     L     DR R+ Q+   +L NA+ ++  G T+ ++A                
Sbjct: 256 VAVTIAPDLPEVYVDRDRISQVLLNLLHNAVKWTDAGGTITIEAGLRSRSELGHHLSRML 315

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGG 770
              N   I ++ + G+ IP +    +F RF        R   G GLGL+IV+  +  HGG
Sbjct: 316 EPSNRWVIMAIHDTGAGIPAEAIPRIFERFYKVDRARTRGVGGTGLGLAIVKHLVEGHGG 375

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            V ++SS+   +T    +P  E
Sbjct: 376 VVWVASSEGRGSTFTVALPVVE 397



 Score = 37.6 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 14/130 (10%)

Query: 305 LTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
               +  L   L   + + +  R +++ N    +L+ +    +  +     + ++   A+
Sbjct: 47  FNQLFRTLSAALDAGVIVVNDGRTIRYCNDVAAKLFGVSANAVVNHSVITLVRDY--QAD 104

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
            + EQ           S+ +          + + +T+ +     P  G + +  +LT   
Sbjct: 105 TMIEQ-----------SIRRRDPQQVTLQPVLSNRTIRIWCEPLPESGALILARDLTQLS 153

Query: 424 DLETKYNTLV 433
            LE     LV
Sbjct: 154 LLERARRDLV 163


>gi|84623382|ref|YP_450754.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
 gi|84367322|dbj|BAE68480.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
          Length = 1191

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 13/253 (5%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIF 721
            +      D  L      D  R+ QI   +L NA+ F+ +GS V L+ A            
Sbjct: 906  LAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTERGS-VHLRIAALPQHTQQGIRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  +  +    +F RF          +  G GLGL+I        GG V++SS  
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSEL 1024

Query: 779  EGVTTINCRIPSK 791
                     +P +
Sbjct: 1025 GQGACFVVELPLR 1037


>gi|121998930|ref|YP_001003717.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590335|gb|ABM62915.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 963

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 115/254 (45%), Gaps = 30/254 (11%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    +   +A   K+ F+ ++S+E+R+P+  ++G + LL  ++   LN +Q  Y++ 
Sbjct: 376 RRLKRARQQAEQATRAKSEFLANMSHEIRTPMNAVVGLSQLLLDTE---LNERQLDYLKK 432

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  SS +LL ++NDILD + +++G ++L+     L ++++ +    +    E  I +   
Sbjct: 433 IQRSSRMLLGIINDILDFSRIESGQLELDTGPFDLGEVIDHLATLFSEAAREKEIELIYA 492

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGDFIFSVKN 725
              +L    V D  R+ Q+ + +LSNA+ F+ +G TV L+            +  F V++
Sbjct: 493 IQPELPRMLVGDSLRITQVLTNLLSNAIKFTPRGGTVELEVREEAGAGSAAANIRFQVRD 552

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR-----------GVGLGLSIVESFINLHGGHVSI 774
           +G  +  +  + VF  FV       RR                       +   GG + +
Sbjct: 553 SGIGMDAEQLERVFQPFVQADASTTRRYGGTGLGLGIG---------RRLVERMGGDLEV 603

Query: 775 SSSDEGVTTINCRI 788
           +S     +T    +
Sbjct: 604 TSQPGQGSTFFFTL 617


>gi|224826736|ref|ZP_03699836.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
 gi|224600956|gb|EEG07139.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
          Length = 911

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LT  N  L++ D +K+ F+  V++ELR+PLT+I   +++L+         +Q  +   
Sbjct: 668 RELTAANARLQELDRLKDDFMSSVTHELRTPLTSIRALSEILRDDPDIPPPERQR-FHAI 726

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L  LVN  LDLA +++G  + + + I L  L+ +  ++      +  + + + 
Sbjct: 727 IVGETERLTRLVNQTLDLAKIESGNAEWHTTEIDLKQLVAQSAEATGQLFRDKEVTLSLE 786

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              ++   +ADR RL+Q+   +LSNA  F  +G  V ++ A         V +NG  I  
Sbjct: 787 LPQRVPPLLADRDRLIQVMLNLLSNAAKFVGRGGRVTVRLAETPEGLRVDVADNGKGIAP 846

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F RF         +  G GLGL I    I   GG + + S      T +  +P
Sbjct: 847 EEQQLIFERFRQGGGGMTDKPAGTGLGLPISRHIIEHFGGRLWVESIPGAGATFSFVLP 905


>gi|188992558|ref|YP_001904568.1| Putative two-component system sensor protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167734318|emb|CAP52528.1| Putative two-component system sensor protein [Xanthomonas
           campestris pv. campestris]
          Length = 292

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 43  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 102

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           SAS+  L  +V+D+LDLA ++AG + ++     L DL   ++         +   +    
Sbjct: 103 SASTRELSEMVDDLLDLAKIEAGRVTISPGWFDLMDLFAALRGMFRPLTDASRTTLIFED 162

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +    + +    FSV++ G  IP +
Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLQGDTHVRFSVQDTGIGIPAE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  ++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 223 LHDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGTVGINSVVGQGSEFFVVLP 280


>gi|154685764|ref|YP_001420925.1| KinE [Bacillus amyloliquefaciens FZB42]
 gi|154351615|gb|ABS73694.1| KinE [Bacillus amyloliquefaciens FZB42]
          Length = 739

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 145/786 (18%), Positives = 298/786 (37%), Gaps = 88/786 (11%)

Query: 39  IPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV------WDGKDET 92
           +   L ++ + SL +++         +   L++YH ++        +          +E 
Sbjct: 1   MAETLDLQTKESLKEQLKRMKEENDRLKSDLNRYHVIMNNTLDAIFICRKEMKIVQANEA 60

Query: 93  PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152
              + Q+     I ++  D L            +L+KA +K  K+G  +  V    +   
Sbjct: 61  AARMMQIEAESLINRSVLDFLY------SVPQEELNKAVKKFLKKGHLWKEVPIKLD--- 111

Query: 153 IKIEGRVSGSCAFLRILSLDG--------IYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
                  SG+  ++  L+ DG        +  +++   +  ++ S +  +FK LFD    
Sbjct: 112 -------SGATKYIEFLARDGIGEDYFFVVMRDISSKKILEREFSMNEQLFKDLFDRAVD 164

Query: 205 LVWHRDQAGDILWANISYKKNTETEGIVFQKAI------GESRKLFKEEIKKRMISSSAL 258
            +   D+ G  + AN+S+ K+ E                GE++K  KE  +      +A 
Sbjct: 165 GIVLFDKDGGFIDANLSFCKSFEIGQNELSHLSLRHFTDGENKKHLKEIWETLRRKGNAK 224

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQL----THTYEIL 312
            +   +  S    G  K ++     N      ++I  D++++  +  +L        EI 
Sbjct: 225 GELPVKLRS----GEEKLFEFTITSNVISGFYMSIMRDITEKRLMELKLFKSEERFREIF 280

Query: 313 HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
            N   AI I+  +  +   N S   ++E+ +  L        L  F+            K
Sbjct: 281 ENAMDAIVIWSDDGKIAKANESACRIFELPMDKLV----ETNLCTFIVD--------PQK 328

Query: 373 TWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETK 428
            +K+      K  E  ++  + + NGQ   +  TS      G  + +  N++ +  +E +
Sbjct: 329 KYKQIKKKYEKYGEIREEMLFQMANGQFKELEFTSKRTILEGQHLTILRNVSDRKRMEKE 388

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                    +  +   +G  +F    RI  +NP    +    +  L   T    +    S
Sbjct: 389 LRESELKFRKVFNGSMDGKVLFDNQFRIIDANPLASRILGMPDEELRAYT----VPDILS 444

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTD 547
            +  E+ G       +   D+E   L   L       LE+S    +     +  F +VT+
Sbjct: 445 LFDIENAGVPARKIDLEGMDNEIPFL---LSSSDSRKLEFSFKRNIIQNMNLAIFKDVTE 501

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           +   E  L + +                +++E+R+P+T + GF  LL+    GS+  + S
Sbjct: 502 AKELEERLRKSDTLHVVG-----ELAAGIAHEIRNPMTALKGFIQLLQ----GSIEGEYS 552

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y   I++    + +++ + L LA   A    + Y    +  ++ +    +  + +  N+
Sbjct: 553 LYFNVITSELKRIESIITEFLILAKPQA----ILYEEKDVTQIMKDTADLLNAQANLVNV 608

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNN 726
           +I +   G +     +  +L Q+F  IL NA++    G  + +   + D    + S+++ 
Sbjct: 609 QIHLNLTGNIPPIYCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQSSDQDHILISIQDE 668

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G+ I ED  K +   F       + RG GLGL +    I  H G + + S +   T  + 
Sbjct: 669 GTGISEDKLKRLGEPFY----TTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHL 724

Query: 787 RIPSKE 792
            +P ++
Sbjct: 725 TLPIRQ 730


>gi|229194198|ref|ZP_04321054.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876]
 gi|228589289|gb|EEK47252.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876]
          Length = 484

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PITSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|257094177|ref|YP_003167818.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046701|gb|ACV35889.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 789

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/447 (19%), Positives = 168/447 (37%), Gaps = 37/447 (8%)

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ--VDLETKY 429
           +  ++    +  +S    D  H        +  T+N   G +    NL ++     E   
Sbjct: 325 RLLRQQFAPMLAASTLLVDMSHAGEPLLQPLPTTANDEVGQLIHSFNLLLESLAQREAAL 384

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR-----LSPGTHIRNIA 484
               +      D  S  +   G D      N  +                + G H  ++ 
Sbjct: 385 KESEQHYRTLADGGSALIWTSGTDRHATYFNEPWLRFTGQSPAGQLAAGWAAGIHPEDLD 444

Query: 485 ATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                Y +  D    F  A  + + D E + ++       D   ++          +   
Sbjct: 445 HCRRTYDSHFDRRQPFRMAYRLRASDGEYRWIEDAGTPRVDRAGDFI-------GYIDFC 497

Query: 543 VNVTDSVRAERALTEKNEAL------------------RKADEIKNSFVQHVSYELRSPL 584
            ++++  R E  L +    L                    A+  K  F+  +S+ELR+PL
Sbjct: 498 QDISERKRVEDELEQHRHHLEALVAARTAALARAKEAAEAANAAKTEFLSRMSHELRTPL 557

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF  LL      +L+++Q+  V+ I  +   LL  VN++LDLA V++G ++L    
Sbjct: 558 NAILGFGQLLAMPGDAALSAEQADNVQEILRAGRHLLGQVNEVLDLARVESGRIELKLEA 617

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L  ++ +    +        I I    D       AD +RL Q+   +LSNA+ F+ +
Sbjct: 618 VPLAPIVADCVALVRPLAEARGISIDADIDDAP--LRADAKRLQQVLLNLLSNAIKFNRE 675

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVES 763
             T+ +   R  G    +V ++G  I  +  + +F  F   A       G G+GL++ + 
Sbjct: 676 QGTIRIAGTRHGGRLRLAVSDSGRGIDSEHLQRLFQPFERLASAYDGIEGTGVGLALTQR 735

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            +   GG + ++S  +  +T +  +P 
Sbjct: 736 LVEAMGGIIQVASQLDVGSTFSLDLPL 762


>gi|255263227|ref|ZP_05342569.1| sensory box histidine kinase/response regulator [Thalassiobium sp.
           R2A62]
 gi|255105562|gb|EET48236.1| sensory box histidine kinase/response regulator [Thalassiobium sp.
           R2A62]
          Length = 835

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/382 (21%), Positives = 167/382 (43%), Gaps = 23/382 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E + N   +     +    +GV V   +G+I   NPA  +++   +  +     I  I
Sbjct: 205 RREQEKNQTSERMNTVMGTSLDGVIVTDSNGQIIEFNPAAETIFGHRKLDVLGLDIIDLI 264

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL----LSDSVL--EYSIIPLPNAQ 537
                   +  +  DL      + D  R   QG ++L       SV   E ++      Q
Sbjct: 265 IPK-----HIQNTLDLGGNRAQTNDKRRVVGQGRVKLEAKHFDGSVFPVELAVQSAKTDQ 319

Query: 538 TMLTFVNVTDSVRA---ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +    + D  R    E  L    +     +++K  F+  +S+E+R+PL  ++G   LL
Sbjct: 320 GEIYIAFIRDISRRVADEAELVMARDKALAGEKLKTDFLATMSHEIRTPLNGLLGNMSLL 379

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +    L++ Q +YV Y+  S  +L+N ++D+LD+   DAG +      + ++ LL ++
Sbjct: 380 RDTH---LDTAQDRYVGYMETSGRLLMNHISDVLDITRYDAGKLDTRLGPVNISALLQDI 436

Query: 655 KQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA 712
             + ++   ++   +       +    ++D  RL  +   ++ NA+ F+ +G   + ++ 
Sbjct: 437 VDNQSSAASKHETSLTWKWLSEETSWILSDHDRLQHVMINLIGNAVKFTKRGRVDITVEE 496

Query: 713 ARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLH 768
            +++ +      +K+ G  + ED+ KSVF+ FV+          G GLGLSI + F+N  
Sbjct: 497 IKEHDNPTLQIQIKDTGPGMTEDLVKSVFDDFVTGDTSYHRDVSGTGLGLSIAKRFVNAL 556

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + + S     +T    +P 
Sbjct: 557 GGDIRVESKAGFGSTFWVTLPL 578


>gi|229072176|ref|ZP_04205384.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185]
 gi|228710914|gb|EEL62881.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185]
          Length = 484

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PITSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHASTLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEADTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|197337759|ref|YP_002158682.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197315011|gb|ACH64460.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 798

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 12/249 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L  + E    A++ K +F+ ++S+E+R+PL  IIG + +L  +KL  +   Q 
Sbjct: 270 RHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKLTPI---QL 326

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  I  SS  LL L+NDILDL+ ++AG   +      + +++ +       K  E N+
Sbjct: 327 DYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSIDIAKATEKNL 386

Query: 668 RIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIF 721
            + +     + +F+  D  R+ Q+   + SNAM F+ KG  + +  +      + G    
Sbjct: 387 DLHIHISPDVPNFLTLDEHRIKQVLMNLTSNAMKFTHKG-FISISVSFSNRVENEGYLTI 445

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +VK++G  I  +  +++ N F+       RR  G GLGL+I    I L GG + I S  E
Sbjct: 446 AVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGGALDIESEQE 505

Query: 780 GVTTINCRI 788
             +  + RI
Sbjct: 506 KGSRFSFRI 514


>gi|94264862|ref|ZP_01288637.1| PAS [delta proteobacterium MLMS-1]
 gi|93454683|gb|EAT04948.1| PAS [delta proteobacterium MLMS-1]
          Length = 1089

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 145/349 (41%), Gaps = 29/349 (8%)

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SN    +       R+ PG      A T +       G ++    +   D  +  ++  +
Sbjct: 394 SNREIMATTDWWRQRVHPGDLAAATAETAAWLAAACPGNNIHRYRMVRRDGTQLWVEDRI 453

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + L DS            + +   ++++   + E  L E   A   A+  K++F+ ++S+
Sbjct: 454 KALRDSSGRIR-------EIVGNHIDISARKKDEEKLREAKIAAEAANLAKSAFLANMSH 506

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  IIG ++L   +  G L ++Q   +E I +SS +LL ++NDILD + ++AG +
Sbjct: 507 EIRTPMNAIIGLSEL---TLQGELAAEQRDSLEKIHSSSQLLLGIINDILDYSKIEAGHL 563

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSN 697
           +L         L+  +            + +    D ++    + D  RL QIF+ +L+N
Sbjct: 564 QLAPHPFRPARLVERLGHLFRQNAAAKGLELVYHLDPEIPPVLLGDELRLGQIFTNLLAN 623

Query: 698 AMDFSSKGSTVILKAAR-------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           A+ F+ KG  V L+  R                    +V + G  I ++  K +F  F  
Sbjct: 624 ALKFTRKG-RVELRIQRLAAVAEAEADAAAAAVGLRCAVSDTGVGIDQEQRKRLFKPFSQ 682

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCRIP 789
                 R   G GLGL I    +   GG + + S     +T      +P
Sbjct: 683 ADDTTTRKYGGTGLGLVISARLVEQMGGRLQLESEPGRGSTFFFTITLP 731


>gi|326802096|ref|YP_004319915.1| PAS/PAC sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
 gi|326552860|gb|ADZ81245.1| PAS/PAC sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
          Length = 539

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 161/426 (37%), Gaps = 35/426 (8%)

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIWMF---ENLTVQVDLETKYNT---- 431
           KS    +      +G+       + P     G  I  F    ++T +   E         
Sbjct: 125 KSIFQLEHQVKRLDGKMGWASSRAIPIVDRDGNIIEWFGTTSDITQRKQAEEALRRSKDE 184

Query: 432 ---LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                ++         + V VF    +   +N A   +W       + G  +R +     
Sbjct: 185 LEQQKRLYEAVTASTPDLVYVFDLQYKFTYANKALLIMWGKNTLEEAKGKGLRELGY--- 241

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
             ++          ++ +    R  +      L   + +Y   P+ +A   +  V  T  
Sbjct: 242 EEWHAEMHEREIDEVVATKRLIRGEVAFPHATLGRRIYDYIFSPVFDANNEIVAVAGTTR 301

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              E         +R+  E K+ F+   S+EL++P+T I  +T +   S   + + + + 
Sbjct: 302 DITE---------MRQLSEQKDEFLAMASHELKTPVTVIKAYTQIFHRSAQEANDKQAAA 352

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               + A    L + + ++LD++ +  G + L       N+L++ V + I    H + I 
Sbjct: 353 LAIKMEAQIDKLTSRIAELLDVSRIQGGKLHLQEKHFDFNELIDGVVEEIQRTTHRHQII 412

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFSVK 724
            ++ +     +   D+ R+ Q+   +L+NA+ +S +   + +             +FSV+
Sbjct: 413 RRLTTS---RTVFGDQDRIGQVVINLLTNAIKYSPQSDVIYVYTKLVNENQRDRIVFSVE 469

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IPE   + +F RF      ++    G+GLGL I    I  HGG + + +  EG +
Sbjct: 470 DFGIGIPEADQERIFERFYRVTGGNQNTYPGLGLGLYICSEIIKWHGGTIWLKNKKEGGS 529

Query: 783 TINCRI 788
             +  +
Sbjct: 530 IFSFSL 535


>gi|153811915|ref|ZP_01964583.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174]
 gi|149832049|gb|EDM87134.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174]
          Length = 865

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 170/403 (42%), Gaps = 31/403 (7%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA-VFGPDGRIKLSNPAFRSLWKTEE 471
           +    ++T    +E+  +  +     +++ L + +  +        L N  +       +
Sbjct: 184 MIFLRDITE-AKVESARHLQMAADNASMELLIQSIVRLVDRFVVCDLENDRYEFYNLNGQ 242

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-------LSDS 524
               P     +        Y   +  D    I+T+ ++ RK+L+   ++       L + 
Sbjct: 243 MIYKPLGFYHDFQMQVLEKYKTLEPLDAL-DILTAPENIRKNLKSENDIYKFEYCSLDEK 301

Query: 525 VLEY-SIIPLPN-----AQTMLTFVNVTDSVRAE----RALTEKNEALRKADEIKNSFVQ 574
             +  S IPL        + +L  ++VT   +AE    +AL E   +   A+  K  F+ 
Sbjct: 302 TYKIASYIPLEWKNGKLEKVLLASMDVTQEKKAEIESRQALKEAYWSAENANRAKTEFLS 361

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+++R+P+  I+G T +           +  + +  I+ SS  LL L+N++LD+A ++
Sbjct: 362 NMSHDIRTPMNAIVGLTAI--AGANIESQDRVIECLSKITKSSRHLLGLINEVLDMARIE 419

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSK 693
           +G M L      L DL++ +       + E+     V I+  +      D  R+ Q+F  
Sbjct: 420 SGKMTLAQEDFNLPDLVDNLITLTKPVLDEHKHNFDVRINHIEHEDVCGDSLRIQQVFVN 479

Query: 694 ILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           ++SNA+ ++  G  +              G + F++++NG  +  +  K +F+ F     
Sbjct: 480 LMSNAIKYTLDGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADD 539

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +  G GLG++I  + +NL  G++ + S+    T I   I
Sbjct: 540 HRTTKVQGTGLGMAISRNIVNLMNGNIKVDSTLHKGTKITVTI 582


>gi|328856936|gb|EGG06055.1| hypothetical protein MELLADRAFT_43665 [Melampsora larici-populina
           98AG31]
          Length = 1113

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 156/382 (40%), Gaps = 27/382 (7%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSP 476
           +LT++VD+E      +    +T++ + + + +F  + G++         L   +   L  
Sbjct: 438 DLTMKVDIEAA--GEIAQLRDTVNSMIDRLNIFALEVGKVC--------LEVGKNGNLGV 487

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             H+ +I  T        +   L          +  S     +  +   +E S     N+
Sbjct: 488 TAHVTDIDGTWQDLTKHVNRMALNLTAQVRAFAQISSAATNGDFSAFVTVEASG--EMNS 545

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                   V     A +  T   EA   A+  K+ F+ ++S+E+R+P+  IIG T +   
Sbjct: 546 LKNQINSMVFSLRDALQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTQI--- 602

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L  +Q + +  + A +  LL +++D+LDL+ ++AG M +      L   +  V +
Sbjct: 603 TLATELTRQQRENLTIVHAMANNLLLIIDDVLDLSKIEAGRMTIEKVPFALRTAVFGVLK 662

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
           S+A K   +N+++       +    V D  R+ Q+ + ++ NA+ F+  G  V L     
Sbjct: 663 SLAVKALTSNLQLVFDIAPDVPDFVVGDPFRMRQVITNLIGNAIKFT-SGGHVGLSCEVA 721

Query: 714 -----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
                 D     F V + G  I  D    +F+ F        R   G GLGL+I +  +N
Sbjct: 722 YQDPITDEFRLEFCVFDTGIGIKPDKLDLIFDTFCQADGSTTRKYGGTGLGLTISKRLVN 781

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L GG + + S     +     I
Sbjct: 782 LMGGTLWVESEYNYGSKFFFSI 803


>gi|239636842|ref|ZP_04677841.1| sensor protein ResE [Staphylococcus warneri L37603]
 gi|239597516|gb|EEQ80014.1| sensor protein ResE [Staphylococcus warneri L37603]
          Length = 586

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 168/421 (39%), Gaps = 44/421 (10%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKV 435
            I    +            +   +  + T +  G     F N++ ++       +T   +
Sbjct: 203 RITKPLRELRNQAQKVSQGDYSHITSVSTKDEIGELSRAFNNMSFEIQEHVEALSTSKNI 262

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--PGTHIRNIAATCSRYYNE 493
           +   I+ + EGV        I LSN     ++ T ++         I     T    + E
Sbjct: 263 RDSLINSMVEGVIGINEQKDIILSNKMADQVFHTLDDNAVELIEKQIEQTFNTKETQFQE 322

Query: 494 SDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            +    +  II S+ D  ++    G + ++ D   E+++                     
Sbjct: 323 IEANTRYYVIIMSYIDRIQNDGRSGIVAIIRDMTNEHNL--------------------- 361

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                         D++K  F+ +VS+ELR+P+  + G+T+ +    +   + +  + + 
Sbjct: 362 --------------DQMKKDFIANVSHELRTPIALLQGYTESIVDGVVTEPD-EIHESLA 406

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +   S  L  LVN++L++A +DA  + +   +  + DLLN+++     +  +  + ++ 
Sbjct: 407 IVLDESKRLNRLVNELLNVARMDAEGLSVEKESQPIADLLNKMRIKYRQQATDLELNMQF 466

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               +      D  R+ Q+ + ++ NA  ++  G T+ +K   D+   I S+ + G+ I 
Sbjct: 467 EVSNQQLWDY-DMDRMDQVLTNLIDNASRYTQPGDTISVKTDEDDRSHILSIADTGTGIA 525

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + VF+RF       +R   G GLGL I +  I  HGG + + S     TT   ++P
Sbjct: 526 PEHLQQVFDRFYKVDASRKRGKQGTGLGLFICKMIIEEHGGTIEVESQVGKGTTFIIKLP 585

Query: 790 S 790
            
Sbjct: 586 K 586


>gi|83945039|ref|ZP_00957405.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851821|gb|EAP89676.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 614

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/358 (24%), Positives = 154/358 (43%), Gaps = 32/358 (8%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            Q   +D ++E V      GR+   N AF + +                     R++   
Sbjct: 14  AQRALLDAMAELVLARDSSGRVTEVNAAFLNAFGGSRQ------------DWIGRWFA-- 59

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                 A   ++    R+           + +E+S   L +  T+    +V++  R ERA
Sbjct: 60  -----VAPAPSTTGQPRRYDAAMRTRAGAAWIEWSETTLADGGTIAVGRDVSEE-RRERA 113

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                    +A + K+ F   V++ELR+PL+  +G   LLK S    L+  Q+ Y+E + 
Sbjct: 114 ------EASEAAQGKSVFFASVTHELRTPLSGALGAAALLKDS---GLHPDQAAYLEAVR 164

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVIS 673
           +S+   LNL++DILDL+ ++AG + L    + L  L+ +  + +AT+  E  + +   IS
Sbjct: 165 SSAQHALNLIDDILDLSRLEAGRLTLRAEPVDLRALIEDACEILATRAAEKGLALAHAIS 224

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                   AD  RL QI   +  NA+ F+  G  + ++A+  +G+     K+ G  I + 
Sbjct: 225 SDVPAEIRADPARLRQILFNLGGNAVKFTETGGVI-VQASYHDGELSLIFKDTGPGISKT 283

Query: 734 MCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              ++F  F   A       G GLGL++V+       G V +SS      T   R P+
Sbjct: 284 DQSTLFKHFERGAAEHNATPGAGLGLAMVKRLAEAMEGEVGVSSEPGQGATFWTRFPA 341



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 10/117 (8%)

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
             + L D++  LV  RD +G +   N ++       G   Q  IG    +          
Sbjct: 14  AQRALLDAMAELVLARDSSGRVTEVNAAFLN---AFGGSRQDWIGRWFAVAPAPSTTGQP 70

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
                        + +E            L   G   +  DVS+E     + +   +
Sbjct: 71  RRYDAAMRTRAGAAWIEWSE-------TTLADGGTIAVGRDVSEERRERAEASEAAQ 120


>gi|269961140|ref|ZP_06175508.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834091|gb|EEZ88182.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 987

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 7/238 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +A   K++F+  +S+E+R+P+  ++G   LL  S    LN  Q +Y E I+ S  
Sbjct: 460 RKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDS---GLNPIQKRYAEIINRSGK 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++ND+LD + ++AG +++      L+ ++ +  Q +  K  E  +      +  +G
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVG 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMC 735
            +   D  R+ Q+ + ++ NA+ F+ +G   + +     D    +F V + G  I +   
Sbjct: 577 RYWKGDVIRINQVLNNLVGNAIKFTEQGEIDIYVSLNPEDETQVLFEVSDTGIGIAKKDQ 636

Query: 736 KSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K++F+ F        Q  G GLGL+I    I   GG + + S +   +     IP +E
Sbjct: 637 KTLFDAFTQAEGGMNQTGGTGLGLAISRRIIQAMGGCLEVDSDEGHGSRFWFSIPLEE 694


>gi|42524989|ref|NP_970369.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39577200|emb|CAE81023.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 377

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 165/376 (43%), Gaps = 19/376 (5%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           TV  + E ++ T        I+ L  G+ +    G + L N     ++      L  G+ 
Sbjct: 3   TVAFEHENRFKT-------IIESLPTGIVMVNKSGFVVLCNGEMEKMFGYSPGELK-GSP 54

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY---SIIPLPNA 536
           I  +    +R ++         +         + L G  +   +  +E     I+   N+
Sbjct: 55  IERLVPMGARQHHPQHREGFMQSPTKRQMGAGRDLSGLCKDGKEIPVEIGLNHIVIDNNS 114

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             + + V++T+    E  L    + L++ ++    FV  VS++L+SPL     F + +K 
Sbjct: 115 YAIASIVDITERKIIETRLKHAYDELQQKNQEMEQFVYTVSHDLKSPLVTSSSFIEFIKE 174

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                        ++ +  +   +  L+ND+L L+   AG M+LN S + +ND++NE+ +
Sbjct: 175 DIKSGNMEDVHDSIDRLEKAHKRMQELINDLLQLSR--AGRMELNLSDVSMNDIINEILE 232

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSKGSTVILKAAR 714
           + + ++ + NI +++ +D  L   + DR+RL Q+   +++NA+ +  SS    + +    
Sbjct: 233 NFSDRLKDRNIEVQLPTD--LPKVIGDRRRLYQVLENLVTNALKYGTSSPHPQIQILTKD 290

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              + +  VK+NG  I     + +F  F    +   + G G+GL+IV+  + LHGG   +
Sbjct: 291 APTEMLVGVKDNGPGIAPAYHRKIFGLFQRLDNS--QEGTGVGLAIVQRIMQLHGGRTWV 348

Query: 775 SSSDEGVTTINCRIPS 790
            S +    T     P 
Sbjct: 349 ESRENEGATFWLAFPK 364



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 25/250 (10%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E    +       I+ +L   I + +++ ++   N    +++      L  +P    +  
Sbjct: 2   ETVAFEHENRFKTIIESLPTGIVMVNKSGFVVLCNGEMEKMFGYSPGELKGSPIERLVPM 61

Query: 358 FLRSAN-KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             R  + +  E       K  + +    S   KD   +P    L+ IV  N     I   
Sbjct: 62  GARQHHPQHREGFMQSPTKRQMGAGRDLSGLCKDGKEIPVEIGLNHIVIDN-NSYAIASI 120

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD---------------------GR 455
            ++T +  +ET+         +    + + V     D                     G 
Sbjct: 121 VDITERKIIETRLKHAYDELQQKNQEMEQFVYTVSHDLKSPLVTSSSFIEFIKEDIKSGN 180

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD--GWDLFAAIITSFDDERKS 513
           ++  + +   L K  +        +  ++       N SD    D+   I+ +F D  K 
Sbjct: 181 MEDVHDSIDRLEKAHKRMQELINDLLQLSRAGRMELNLSDVSMNDIINEILENFSDRLKD 240

Query: 514 LQGTLELLSD 523
               ++L +D
Sbjct: 241 RNIEVQLPTD 250


>gi|329850148|ref|ZP_08264994.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842059|gb|EGF91629.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 1140

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 12/229 (5%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  +S+E+R+P+  ++   +LL      SL +K  ++ + I+ S   LL ++NDI
Sbjct: 256 AKSDFLATMSHEIRTPMNGVMVMAELLAAE---SLPAKARRHAQTIAKSGRSLLAVINDI 312

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQR 686
           LD + ++AG +++  + + + DL +++      K  E  + + V +       V AD  R
Sbjct: 313 LDFSKIEAGKLEVETTEVDILDLCDDIITLFQAKAREKGLELAVSAHPDAPRIVPADPVR 372

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFV 743
           L Q+ S ++SNA+ F+ +G   ++  A + G    +  SV++ G  I  D    +F  F 
Sbjct: 373 LGQVLSNLISNALKFTDQG---LVAVAIEPGPGRSWKLSVRDTGIGIAADKLPKIFAAFS 429

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  RR  G GLGL+I    +   GG VS++S     T     +P+
Sbjct: 430 QEDQTTTRRFGGTGLGLTIARRLVEAMGGEVSVTSQQGRGTRFLVVMPA 478


>gi|300022887|ref|YP_003755498.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299524708|gb|ADJ23177.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1897

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 24/302 (7%)

Query: 507  FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
              +++K+LQ T E L+    + +       + +       +  +A RA+ EK   L    
Sbjct: 1174 LQEQQKALQKTNEELAQKAQQLA------ERNVEVERKNEEIDQARRAVEEKAAELALTS 1227

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
              K+ F+ ++S+ELR+PL +I+     L  +   +L+ +Q ++   I  + T LLNL++D
Sbjct: 1228 RYKSEFLANMSHELRTPLNSILILGQQLSDNPDRNLSERQVEFARTIHGAGTDLLNLISD 1287

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
            ILDL+ +++G + +N   +  N +L  + +    +    ++  ++  D  LG +   D +
Sbjct: 1288 ILDLSKIESGTVSVNAEDVSFNAVLEAIARPFRHEAERRDLAFEMSFDADLGRTLFTDSK 1347

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKA--------------ARDNGDFIFSVKNNGSSIP 731
            RL Q+   +LSNA  F+ +G  V L                A       F V ++G  IP
Sbjct: 1348 RLQQVLKNLLSNAFKFTREG-YVRLSVKPAATKWGPDHPTLAEAQTVVAFEVDDSGIGIP 1406

Query: 732  EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             D  K +F  F        R   G GLGL+I     +L GG + + S     +T    IP
Sbjct: 1407 LDKQKIIFEAFQQADASTSRKYGGTGLGLAISRELAHLLGGEIQLRSEPGRGSTFTLYIP 1466

Query: 790  SK 791
             +
Sbjct: 1467 LR 1468


>gi|293376810|ref|ZP_06623030.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292644562|gb|EFF62652.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 444

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 150/371 (40%), Gaps = 29/371 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E +    +++     + + + + +    G ++ +N  F+                 ++
Sbjct: 100 QQEYRNRRNMQIISIITNSIEDPMVILNISGELEYANNRFKKWV--------------DL 145

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           +A  +  +NE    +L   +  +   E  + + TLE+     +  +  P+ N        
Sbjct: 146 SALKTVSFNEVKQPELRKVLEDALICE-TTRKKTLEIDQKFYIS-TANPIYNE------- 196

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              D       +      L+K   ++  F  +VS+EL++P++ I G T++L         
Sbjct: 197 --HDDFNGSVIIFHDITDLQKYQNLQKEFFGNVSHELKTPISAIKGCTEILLNGAKND-P 253

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +   +++  IS  +  +  LV D+L +   +   +K+      LN+LL +          
Sbjct: 254 AALDEFLTMISDENNRMEQLVKDLLLINRYEFDQIKMKTEVFCLNELLTDCIVQPLNVAK 313

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             + +IK+ +  +      D  +L   F  +L+NA+ +S + +T+ +KA      +   V
Sbjct: 314 LKHQKIKLEAPEQ-YQIEGDYIQLKHCFLNLLTNAIHYSGENTTITVKAKAVGEYYQIQV 372

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP      +F RF        R   G GLGLSIV+S I  H G + ++S     
Sbjct: 373 IDQGIGIPSADLPHIFERFYRVDRARSRHTGGTGLGLSIVQSIIEAHKGRIMVNSELNVG 432

Query: 782 TTINCRIPSKE 792
           TT    +P K+
Sbjct: 433 TTFTVSLPKKK 443


>gi|188577310|ref|YP_001914239.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae PXO99A]
 gi|188521762|gb|ACD59707.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae PXO99A]
          Length = 1191

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 13/253 (5%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIF 721
            +      D  L      D  R+ QI   +L NA+ F+ +GS V L+ A            
Sbjct: 906  LAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTERGS-VHLRIAALPQHTQQGIRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  +  +    +F RF          +  G GLGL+I        GG V++SS  
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSEL 1024

Query: 779  EGVTTINCRIPSK 791
                     +P +
Sbjct: 1025 GQGACFVVELPLR 1037


>gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681]
 gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681]
          Length = 1039

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 3/241 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            +   +  L   D +K+ F+ + S+ELR+PL  II     +        N  Q   +  I
Sbjct: 422 EVENLSRRLLTLDGLKDEFLANTSHELRTPLHGIINIAQSMLDRYGTQFNEPQKHNLVLI 481

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +     L  L+NDILD + +  G + LN     +   +N V + +   + +  +      
Sbjct: 482 ANVGRRLSYLINDILDFSNLKNGRLALNRRPANVQAAVNSVLEVLGHTVGKKKLHFVKEW 541

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L    AD  RL+QI   +L NA+ F+ +G  +++ A     +   SVK+ GS I ++
Sbjct: 542 PHSLPKVDADEDRLIQILYNLLGNAVKFTEEGE-IVISAKAGTREMEISVKDTGSGIAQE 600

Query: 734 MCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F   A+       G GLGL IV   + LHGGH+ + S     +T    +P  
Sbjct: 601 HLPHIFEPFNRGANAEDEGYSGTGLGLGIVRRLVELHGGHIRVESRLGKGSTFYFTMPLA 660

Query: 792 E 792
           +
Sbjct: 661 Q 661



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 128/366 (34%), Gaps = 62/366 (16%)

Query: 433  VKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
            ++V  E +      V      +  + + N   R      +  +   + I      C R  
Sbjct: 717  LRVLEELLYTTGCSVVAVDHAEEALHMLNGRTRFDLVITDWMMPEMSGIE----LCRRIR 772

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
                  +L   ++T+ D       G +   +D    +   P+ +A+ +   V    ++R 
Sbjct: 773  ERYSLSELPVLLLTARDLPGDIRAGFMAGAND----FLRKPV-DAEELKARVRTLLNMRH 827

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                  ++E      +IK  F+ +        L  I+        S +     K ++   
Sbjct: 828  SAEEAVRSEMAFLQAQIKPHFLYNA-------LNVIV--------STVAVDPDKAAEL-- 870

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYST--IVLNDLLNEVKQSIATKMHENNIRI 669
                           +++L+    G          + L+  L  V+  +A +      R+
Sbjct: 871  ---------------LMELSQYLRGSFDFQNRENTVPLSKELELVESYVALEKARFEERL 915

Query: 670  KVISD-GKLGSFVADRQRLLQIFSKILSNAMDFS----SKGSTVILKAARDNGDFIFSVK 724
            +V  + G+    +     +  I    + NA+       + G TV +    D  DF+ SV 
Sbjct: 916  QVTIEVGRNIRSLIPPLSIQPI----VENAIRHGVMQRATGGTVRVVVQEDGTDFVVSVT 971

Query: 725  NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL-SIVESFINLHGGHVSISSSDEGVTT 783
            ++G  IP +  + +    +S  H        +GL +I    I+++G  + I S+    TT
Sbjct: 972  DDGVGIPAERLEQL----LSEDHVSSS----VGLRNIHRRLIHMYGEGLRIESNSMQGTT 1023

Query: 784  INCRIP 789
            ++ R+P
Sbjct: 1024 VSFRVP 1029


>gi|186475127|ref|YP_001856597.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184191586|gb|ACC69551.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1485

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 112/595 (18%), Positives = 221/595 (37%), Gaps = 57/595 (9%)

Query: 236  AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS-YKIVRVLNSFGEAGIAI- 293
            A+          I + +++  A E            G  +  + +  +       GIA+ 
Sbjct: 491  AVRADLAPLAGLIDRALLAMPASEHQRIHQKWVTGEGRRRGGWSVTALRLLPVLIGIAVI 550

Query: 294  -----------------DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                                 E  +  QL     ++  +   +   D        NR++ 
Sbjct: 551  LLLTLRAYVLLQREVARRERTERELESQLNFQQTMMEMVPYPLVAKDLQGRYIAVNRAYE 610

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            E   +    +    S D +  +    +   EQL+    +        S+   +  +   +
Sbjct: 611  EATGLRRERVIGRTSAD-VHAWGEENSLRLEQLSRSALQSG------SATQIELAFEDCD 663

Query: 397  GQTLH----VIVTSNPRGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
            G + H    V V  +  G     +    ++T     E   +   +   +    L   V  
Sbjct: 664  GDSRHGLFCVCVCDDADGAPLCLLGTLVDITDIRRAEMLASETQRRLVDVTSSLPAVVFQ 723

Query: 450  F--GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
               G DG       +F  +    E+ L   +     +A        +D      A +   
Sbjct: 724  LRRGLDGAY-----SFLYVGGDTEHLLGYDSAALMRSAALDFGTIFADDRPGVVAALGRS 778

Query: 508  DDERKSLQGTLEL---LSDSVLEYSIIPL--PNAQTMLTFVNVTDSVRAERA--LTEKNE 560
             +  + L     +        +   + P   P+  T+ +   V  S+   RA  L    +
Sbjct: 779  AELSEPLHLEFRINCPAEQRWVRAELAPRREPSGATVWSGYWVDASIERLRADELAHARD 838

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                A   K+ F+  +S+E+R+P+  ++G  ++L+ ++   L++ Q + +  I  S+  L
Sbjct: 839  LAEAASRAKDDFLAMMSHEIRTPMNGVLGLVEVLERTR---LDADQGEMLGMIHESAGAL 895

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GS 679
            L +++D+LD + ++AG + +    I L DL++     +A + HE  ++++V  D ++  +
Sbjct: 896  LQILDDLLDYSKIEAGRLTIESEPIDLRDLVDTAVGLLAGRAHEKGLKVRVDVDPQVAAT 955

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---GDFIFSVKNNGSSIPEDMC 735
               D  RL QI   +L NA+ F+ +G   V ++ A  N        +V + G  I  D+ 
Sbjct: 956  LRGDSVRLRQILFNLLGNAIKFTPQGEVDVQVQVAEQNASGQTVEITVDDTGIGIAPDVQ 1015

Query: 736  KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +F  FV       RR  G GLGL+I    + L GG +S+ S+    T +  R+
Sbjct: 1016 ARLFEPFVQAESSTTRRFGGTGLGLTICRKLVALMGGTLSLYSTPGEGTRMTLRL 1070


>gi|58581450|ref|YP_200466.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae KACC10331]
 gi|58426044|gb|AAW75081.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae KACC10331]
          Length = 1210

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 13/253 (5%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 808  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 864

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 865  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQ 924

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGDFIF 721
            +      D  L      D  R+ QI   +L NA+ F+ +GS V L+ A            
Sbjct: 925  LAFHCALDDALPPALRGDASRVQQILLNLLFNAVKFTERGS-VHLRIAALPQHTQQGIRV 983

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  +  +    +F RF          +  G GLGL+I        GG V++SS  
Sbjct: 984  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSEL 1043

Query: 779  EGVTTINCRIPSK 791
                     +P +
Sbjct: 1044 GQGACFVVELPLR 1056


>gi|86144435|ref|ZP_01062767.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
 gi|85837334|gb|EAQ55446.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
          Length = 880

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 10/251 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +  +    + L    E    A++ K+ F+ ++S+E+R+PL  IIG  ++L  S+   L++
Sbjct: 364 MERNYHHNKELIIAKEDAISANKAKSVFLANMSHEIRTPLNGIIGMAEILSQSQ---LSA 420

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + +E I +SS  LL L+NDILDL+ +++G + L+     L + + +    I +K   
Sbjct: 421 NQQEVLEDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAIS 480

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDF 719
            +I + +  D +  +    D  R+ Q+ + +LSNA+ F+SKG+     A        G  
Sbjct: 481 KDIELDINIDAQTPTQLFFDEYRVRQVLTNLLSNAIKFTSKGTITTDIAYTPMSLGRGKL 540

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  I  +  +S+F  F        R   G GLGL+I    ++L GG+++  S 
Sbjct: 541 ECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSV 600

Query: 778 DEGVTTINCRI 788
             G +T    +
Sbjct: 601 KGGGSTFTFCL 611


>gi|84385756|ref|ZP_00988786.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84379072|gb|EAP95925.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 819

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/418 (19%), Positives = 170/418 (40%), Gaps = 16/418 (3%)

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGE 438
                 +   +TW   +G+   +      RG   +     LT Q   +   + + +   +
Sbjct: 112 ERLNRIDAIHNTWLEKSGEKEIMQRNLVNRGEAEMQSVVYLTQQRTGKRLIDEIRQEIAQ 171

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I+   + ++V     R+  S  +                 I  + AT S    +     
Sbjct: 172 FIEIEQQLISV-----RVAKSESSANQTSYVLILGTLFSVFISLLVATWSSKRIKRRLHT 226

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV---NVTDSVRAERAL 555
           L  A         K    TLEL S +  +  +  L  +   +T     N ++     + L
Sbjct: 227 LLKAANQVAAGHLKQGAATLELGSKNDSQDEVALLTQSFQKMTTNLVKNDSEMREKNQEL 286

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E+      A + K+ F+  +S+E+R+P+  ++G + ++ +    +   +  + ++ I  
Sbjct: 287 VEERTKAEAAVKAKSEFLSTMSHEIRTPMNGVLGISQIIASQ---TQEPETKENIDLILD 343

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD- 674
           S   L+ ++NDILD + V+   ++L+++      ++  V+ ++     E  IR+ + ++ 
Sbjct: 344 SGHHLMTILNDILDFSKVEENKLELDFAPFNFVQVIQPVRSALKPLADEKGIRLLIENNI 403

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPED 733
                 + D  RL QI   +  NA  F+ +G   +     R N   I +V + G  IP+ 
Sbjct: 404 PTSIQLIGDCARLRQIMFNLGGNATKFTKEGHVSIQADLNRPNNQLILTVTDTGIGIPKG 463

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +FN F        R   G GLGL+IV++ ++L  G ++++S+    T     +P
Sbjct: 464 KHEQIFNSFEQADTSTTRKFGGTGLGLAIVKNLVSLMNGEITLTSAVGLGTKFQVSLP 521


>gi|332525738|ref|ZP_08401885.1| periplasmic sensor hybrid histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332109295|gb|EGJ10218.1| periplasmic sensor hybrid histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 1206

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 13/264 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNE-------ALRKADEIKNSFVQHVSYELRSPLTNI 587
           N QT+     +    R + AL    E           A+  K+ ++  +S+ELR+PL +I
Sbjct: 711 NRQTLALQREIESHARTDAALQAAREEADRARGHAEAANRAKSRYITTISHELRTPLNSI 770

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  LL+  +  ++   + Q V  I      LL+L+   LD+A +++G + L+   +  
Sbjct: 771 LGYAQLLEEDE--AMPPHRRQAVAVIRRGGDHLLSLIEGTLDIARIESGKLALDVRPMRF 828

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            D L E+ +    +     +  +   DG+L + V AD +RL QI   +L NA+ F+  G 
Sbjct: 829 ADGLAEIARMFELQAAGRGLAFRFAVDGRLPAVVRADEKRLRQILINLLGNAIKFTQAG- 887

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESF 764
            V L+ A       F +++ G  +  D    VF  F   +          GLGL+I    
Sbjct: 888 QVTLRVAHQREMARFEIEDTGPGMTADELARVFEPFERGSAASGQSVGSTGLGLTIARML 947

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
             L GG ++++S     TT   R+
Sbjct: 948 CELMGGEMTVASEPGRGTTFRIRL 971


>gi|326388233|ref|ZP_08209836.1| signal transduction histidine kinase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207399|gb|EGD58213.1| signal transduction histidine kinase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 749

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 116/616 (18%), Positives = 222/616 (36%), Gaps = 57/616 (9%)

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
            N     N   + +V  +A  +  ++    +  R+  +S+ E N      T         
Sbjct: 6   VNWGLAGNEPEDDVVSLRARVQQLEVINAALIDRIERASSFEGNAFSMFETAISLEALVR 65

Query: 278 KIVRVLNSFGEAGIAIDVS---KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRS 334
                L S  +     + S         +  T   + + +L+   AI+D N  L   N +
Sbjct: 66  DRTAALESALDQLSRANSSLALAHRVAEEARTRLRDAIESLSDGFAIYDGNDRLVVCNAA 125

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANK-LPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           F  LW  ++A L+ +    EL   +    + +   ++   W  +  + +  +        
Sbjct: 126 FRRLWP-EIAELSDDLQFSELARAVAERGRTIGSLVSPDRWVADRMARHTLARGI-HIQA 183

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL-----VKVQGETIDHLSEGVA 448
           L +G+   +       GG + ++ ++T     E + +             T+D LSEGV 
Sbjct: 184 LSDGRWFQINEMRTSEGGVVGIYTDITEVKAAEARQHARHLGEHNLALQSTLDTLSEGVC 243

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           ++     +++ N     L    E+     TH   +    +   +E    D  AA      
Sbjct: 244 LYDHKHGLQVYNGGLARLLGLREDHRPIATHAGLVEHCRALGLDEPGILDWRAA-----P 298

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--- 565
            ER+S    L      V+E    P+       +F +VTD    E+ L E  E L +    
Sbjct: 299 GERQSRTCRL---GARVVEIRSTPIEPGGMAYSFDDVTDRQLYEKTLREAAETLERRVTE 355

Query: 566 -----------------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                                        +  K SF+   S++L  PL     F   L  
Sbjct: 356 RTRELEAEVAERRAVEAQLMSAKTAAEHANRSKTSFLAAASHDLLQPLNAARLFVAALSE 415

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +L        +       S   LL     + +++ +DAG +K   +TI L+ +L  ++ 
Sbjct: 416 RRLALPTRALVRQTGVALDSVEELL---EALFEISRLDAGAVKPEVTTIELDRMLGALRI 472

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             AT+  +  + +++          +D + L +I    LSNA+ ++ +G  V +    ++
Sbjct: 473 EFATQAKQAGLILRI--PDTGLWVRSDIRMLRRILQNFLSNALRYTREGE-VSIDVMCED 529

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
           G+   +V ++G  I      ++F  F          G GLGL+IV+      G  + ++S
Sbjct: 530 GEARIAVCDSGPGIQPQHLTTIFEEFRRVNPDRSTPGNGLGLAIVQRASQTLGHRIEVTS 589

Query: 777 SDEGVTTINCRIPSKE 792
           +    +    R+P  E
Sbjct: 590 TPGVGSQFAVRVPIGE 605


>gi|301166213|emb|CBW25788.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 936

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E  + E+ + L  A+E+K++F+ ++S+E+R+PL  I+G + LL        N    +Y
Sbjct: 546 ELEAKVRERTKKLIHANEVKSNFLANMSHEIRTPLNGILGISSLLYERMEKKEN---IEY 602

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  SS  LL ++NDILD + +++  ++L      L+  L ++K  + +     N +I
Sbjct: 603 LNIIKRSSEDLLQIINDILDFSKIESDGIELESLPFDLHKELEDIKNLMISSSTSQN-KI 661

Query: 670 KVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724
           ++  D  L      DR R+ QI   ++ NA  F++ G   I    L ++++  +    VK
Sbjct: 662 EIFWDNDLTKVYTSDRLRIRQILINLIGNANKFTTNGKIEITVKELSSSQEISNLQIIVK 721

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP     ++F  F        RR  G GLGLSI ++   + GG ++  S +   T
Sbjct: 722 DNGIGIPATSQSNIFKSFTQADISTTRRFGGTGLGLSISKALAEIFGGDITFESEEGKGT 781

Query: 783 TINCRI 788
           T    I
Sbjct: 782 TFTFSI 787


>gi|225419781|ref|ZP_03762084.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme
           DSM 15981]
 gi|225041585|gb|EEG51831.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme
           DSM 15981]
          Length = 938

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 120/247 (48%), Gaps = 11/247 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +  + E        K+ F+  +S+E+R+P+  I+G T+L+  S    L+ +    +E I 
Sbjct: 550 MQAELEKAEARSTAKSDFLSKMSHEIRTPMNAIVGMTELV--SMESGLSPETRDKLEKIR 607

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS  LL+L+NDILD++ +++G + +N     L ++L EV+  I+ +  +  + ++ + +
Sbjct: 608 SSSRYLLSLINDILDMSRIESGNLSINEEAFSLREILEEVESIISGQAQQRGLALECVRN 667

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFI--FSVKNNGSS 729
                   D  RL Q+   +L N++ F+  G  + L       +  + +  FSV++ G  
Sbjct: 668 IDCDWLTGDPIRLRQVLLNLLGNSVKFTPTGGLLQLSVQACGMEGQEAVYDFSVRDTGVG 727

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           I  +  + +F  F     +  +  G GLGL I  + +   GG +++ S        + R+
Sbjct: 728 ISHEDQERIFRPFEQLGGNELKSLGTGLGLPISRNLVRSMGGELTLESDTGKGAVFSFRL 787

Query: 789 ---PSKE 792
              P+ E
Sbjct: 788 RFKPAGE 794


>gi|15604100|ref|NP_220615.1| histidine kinase sensor protein (barA) [Rickettsia prowazekii str.
           Madrid E]
 gi|3860792|emb|CAA14692.1| HISTIDINE KINASE SENSOR PROTEIN (barA) [Rickettsia prowazekii]
 gi|292571826|gb|ADE29741.1| Histidine kinase sensor protein [Rickettsia prowazekii Rp22]
          Length = 497

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  + E + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 238 TNYARQIIEEQLETNRNLKAQIEKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I  +   LL+++NDILDL+   A  +K++   + LN L++     
Sbjct: 298 R---DTEKSKNYIKDIHDAGKHLLSMINDILDLSKASADKLKVDNIDLDLNKLISSSLIL 354

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           I  + ++  + +      +     AD +RL Q+   +LSNA+ F++ G +V +   +D  
Sbjct: 355 IKPRAYQAEVELISRLPKEHVVINADPKRLKQVLLNLLSNAVKFTNSGGSVTISLEKDEL 414

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 415 AKLVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 474

Query: 774 ISSSDEGVTTINCRI 788
           + S     TT+    
Sbjct: 475 LQSKINKGTTVTITF 489


>gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
 gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
          Length = 1128

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 131/299 (43%), Gaps = 23/299 (7%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           +D  D    +  SF+  R+S++  +EL+                         +  +   
Sbjct: 404 ADRKDEIGRLALSFERMRRSIKEKIELI--------------------KSQNQELEQNLV 443

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            + ++NE L+ A+++K+ F+   S+ELR+PL  +IG  + + +   G + +     ++ I
Sbjct: 444 TIKKQNEELQLANKLKDEFLATTSHELRTPLHGMIGIAEAMISGANGPIGANHKYQLDII 503

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   L  LV+D+LD   +  G + +  S I L      V +     + E  IRI    
Sbjct: 504 VNSGQRLAGLVDDLLDYHKMRYGNLDIERSAISLTGATQLVLELSHHLLGEKKIRIINQV 563

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L    AD QRL Q+   ++ NA+ ++++G  ++L A   +      V + G  IP  
Sbjct: 564 LEPLPYVSADPQRLEQVLYNLVGNAIKYTNEG-KIVLSATAMDDHIRVQVVDTGQGIPAQ 622

Query: 734 MCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +F   V   H     R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 623 QLEHIFEPLVQAGHDSGHYRQGAGLGLSISRQLIELMGGSLYVSSQPHVGTTFSFTLPL 681


>gi|307704959|ref|ZP_07641847.1| two-component sensor histidine kinase [Streptococcus mitis SK597]
 gi|307621469|gb|EFO00518.1| two-component sensor histidine kinase [Streptococcus mitis SK597]
          Length = 449

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 141/380 (37%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLHSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   +     D   S     E LS  V  ++++   
Sbjct: 135 LNKSILELL-----KIEDEYELRDLITQVPELMID---SQDANGEYLSLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALS--EPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVT 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|298241197|ref|ZP_06965004.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554251|gb|EFH88115.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 383

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 153/366 (41%), Gaps = 27/366 (7%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK--TEENRLSPGTHIRNIAATC--SRY 490
           +    +D ++  +AV   +GR+ + N A+R   +     ++L+      N    C  ++ 
Sbjct: 30  LAQAILDSVTVMMAVLDTNGRVHIVNEAWRRQARESCSPDQLARTGIGMNYLDVCKHAQG 89

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLS---DSVLEYSIIPLP-NAQTMLTFVNVT 546
            +  +  + FA I       + S        S    S    S+ PLP NA  ++  +++T
Sbjct: 90  TSAEEAPEAFAGIEAVLGGRQSSFTLEYPCFSSARQSWYLMSVTPLPGNAGAVVAHIDIT 149

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    E              + K+ F+   S+EL+SPLT +   +  L+     + +   
Sbjct: 150 ERKELE--------------QRKDEFISIASHELKSPLTALTLLSSHLRKKLTENDSFMA 195

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  +      L  L+ND+LD++ + AG +        L+ L+NE+ ++       + 
Sbjct: 196 EQMLTRMEGQVRTLTCLINDLLDVSKIQAGRLGYAKEPFDLDALINEIVETAQLTSPGHR 255

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + I         +   DR +L Q+F  +LSNA+ +S +   V +            +++ 
Sbjct: 256 LMIH---GASHATISGDRDKLGQVFINLLSNAIKYSPQADHVDISLETVQDGAFVRIQDV 312

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP++    +F RF       Q    G+GLGL I    I  HGG +++SS +   +  
Sbjct: 313 GIGIPKERQDRLFERFYRVDTSKQNDVPGLGLGLYIAREIIKHHGGEITVSSEEGKGSIF 372

Query: 785 NCRIPS 790
           +  +P 
Sbjct: 373 SVSLPL 378


>gi|289432510|ref|YP_003462383.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
 gi|288946230|gb|ADC73927.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
          Length = 852

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 113/680 (16%), Positives = 243/680 (35%), Gaps = 48/680 (7%)

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
              ++    GQ F+L    +N       G    S    R      +    ++ T+ CKK 
Sbjct: 203 MFQDRKPDTGQPFELQLIHKNGQTCWFSGH---SRIINRDNKPSYLQLSASDITI-CKKS 258

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA-IGESRKLFKEE 247
              + + +   +     ++  D  G+ +  N S   + +       K  + +   L   +
Sbjct: 259 EKMLRLTRFALEQTTDAIFWTDSEGNFVDVNQSACNSLDYRREDLLKLKVTDIDALITNQ 318

Query: 248 IKKRMISSSALEKNF--CETVSTLEHGNNKSYKIV----RVLNSFGEAGIAIDVSKEITV 301
                   +     +   E++     G     +I     +         IA ++      
Sbjct: 319 TDWEAHWKNLKNSAYLSFESIHRNISGEEIPVEITANYMQCDKMEYNVAIARNIHLRKEA 378

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             QL  T   + +   ++   +Q+  +   N S  +        L +          L  
Sbjct: 379 EKQLKFTSFSVEHTADSVLWVNQSGSIIAANMSACQSLGYTRTELCS----------LNV 428

Query: 362 ANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVTSN-----PRGGTIWM 415
            N  P     + WK     + ++ + + +      NGQ + + V  N            +
Sbjct: 429 ININP-VCVAERWKTLWVRLKQAINFSLESDMFTKNGQQIPIEVMCNFLEFEGIDYCCAV 487

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T +  ++ +     +    T D++S+ V +   D  I+ +N AF      +   + 
Sbjct: 488 LRDITERKKVDARLLRAAEEWRITFDNISDIVFLLDNDFNIQRANRAFTKTLNCQPQDV- 546

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                  +   C +  + +D   +    + +F+ ++       E   D   E +I P+ +
Sbjct: 547 -------LNKKCYQVLHHADCPKVNCPKLIAFNTKKTQRIAYFEENIDKHFEETIDPILD 599

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +      T     E         +             +++EL +PLT+++GF++L++
Sbjct: 600 ANGLSMGTVHTIKDVTEHHKIAAQLMITDRLASLGELSAGLAHELNNPLTSVLGFSELIQ 659

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L     Q ++ IS  +     ++ ++L  A       + +   + +N ++++V 
Sbjct: 660 EKI---LPEDLRQDIQIISQEAQRAAEIIRNLLTFAR----RHEPSKDWVDMNQIIHKVL 712

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF---SSKGSTVILKA 712
                    +NI++    D  L    AD  ++ Q+   I+ NA  F   S    T+++ +
Sbjct: 713 AICNYGQKVHNIQLITNLDPNLPEIKADYFQMQQVLLNIVINAEYFMTQSHGEGTIVISS 772

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            + N     S++++G  + E++   +F+ F +    G  +G GLGLSI    I  HGG +
Sbjct: 773 RKFNDSIQISIRDDGPGMSENVLNHIFDPFFTTKEVG--KGTGLGLSIGHGIITQHGGKL 830

Query: 773 SISSSDEGVTTINCRIPSKE 792
              SS+    T    IP  +
Sbjct: 831 YAESSEGKGATFFIEIPINQ 850



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 102/313 (32%), Gaps = 30/313 (9%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK---RMISSSALEKNFCETVS 267
             G +++AN  +++ T            +S  LF  E      +M      +      + 
Sbjct: 159 PDGKLIFANQIFEEVTGYLVSEVTGEDWKSCGLFSRETTDLIIKMFQDRKPDTGQPFELQ 218

Query: 268 TL-EHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI 321
            + ++G    +      I R          A D++        L  T   L   T AI  
Sbjct: 219 LIHKNGQTCWFSGHSRIINRDNKPSYLQLSASDITICKKSEKMLRLTRFALEQTTDAIFW 278

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
            D        N+S     +     L      D  ++ L +     E      WK    S 
Sbjct: 279 TDSEGNFVDVNQSACNSLDYRREDLLKLKVTD--IDALITNQTDWE----AHWKNLKNSA 332

Query: 382 YKSSET-HKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLVKV 435
           Y S E+ H++     +G+ + V +T+N          + +  N+ ++ + E +    +K 
Sbjct: 333 YLSFESIHRNI----SGEEIPVEITANYMQCDKMEYNVAIARNIHLRKEAEKQ----LKF 384

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
              +++H ++ V      G I  +N +           L     I NI   C     ++ 
Sbjct: 385 TSFSVEHTADSVLWVNQSGSIIAANMSACQSLGYTRTELCSLNVI-NINPVCVAERWKTL 443

Query: 496 GWDLFAAIITSFD 508
              L  AI  S +
Sbjct: 444 WVRLKQAINFSLE 456



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 83/269 (30%), Gaps = 27/269 (10%)

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           F  +  L F N+ F E+    ++ +           F R    L      K +++     
Sbjct: 157 FQPDGKLIFANQIFEEVTGYLVSEVTGE-DWKSCGLFSRETTDL----IIKMFQDRKPD- 210

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             + +  +      NGQT      S      N          ++T+    E     ++++
Sbjct: 211 --TGQPFELQLIHKNGQTCWFSGHSRIINRDNKPSYLQLSASDITICKKSEK----MLRL 264

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               ++  ++ +     +G     N +  +        L         A   ++   E+ 
Sbjct: 265 TRFALEQTTDAIFWTDSEGNFVDVNQSACNSLDYRREDLLKLKVTDIDALITNQTDWEAH 324

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +L  +   SF+   +++ G  E+  +    Y          +    N+     AE+ L
Sbjct: 325 WKNLKNSAYLSFESIHRNISGE-EIPVEITANYMQCD-KMEYNVAIARNIHLRKEAEKQL 382

Query: 556 -------TEKNEALRKADEIKNSFVQHVS 577
                      +++   ++  +    ++S
Sbjct: 383 KFTSFSVEHTADSVLWVNQSGSIIAANMS 411


>gi|120556578|ref|YP_960929.1| multi-sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326427|gb|ABM20742.1| multi-sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 638

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/383 (22%), Positives = 160/383 (41%), Gaps = 26/383 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKT 469
           GT+W+   +     ++ ++           +    G+A++    G +  +NP F  +  +
Sbjct: 278 GTLWITTLILRDRQMQLRF-------WGLFELAPFGIALYDAISGELLQANPGFTRILDS 330

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
           + N +     +R+++    R               T  +       GTL+ L   +L   
Sbjct: 331 KANNIGYFDDVRSLSGDKQRSEPSISNRLASQVRFTGVEGFFPMADGTLQPL---MLHGL 387

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            + L   ++++  +    S R E             + +K+ F+  VS+ELR+PLT+I G
Sbjct: 388 RLDLQGKESVIWIIVEDISQRKEA------------ERLKSEFISTVSHELRTPLTSISG 435

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              LL T+ +G L+ K  Q ++    +S  L  L+ND+LD+  + AG M  N     +++
Sbjct: 436 ALSLLTTNAVGELSGKAQQLLKIAQRNSDQLGFLINDLLDIEKLIAGKMDFNVIEFPVSE 495

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + E  ++I     E NI +    +    +  AD+QRL Q  + ILSNA+ FS     + 
Sbjct: 496 AITESLENIQNYATEKNITLNAQ-ELSTTTVKADKQRLAQALNNILSNAIKFSPVNGQIR 554

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
           +            V++ G  I  +  + +F +F          + G GLGL+I +  +  
Sbjct: 555 IWTKLHGQGLRIYVQDEGPGIAPEFRERMFQKFSQADSSDRRSKGGTGLGLAITKELMAR 614

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
             G V  +S      T    +P+
Sbjct: 615 MEGDVDFTSEAGQGATFWLEVPA 637


>gi|218281490|ref|ZP_03487933.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989]
 gi|218217412|gb|EEC90950.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989]
          Length = 717

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 132/288 (45%), Gaps = 9/288 (3%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           ++    T  + S  +    I  L  A      +     +     +  + +  ++A   K+
Sbjct: 242 KQGWINTYVIRSLVIASVLIDFLVTAAIAQFEIRHRKDLEYASQIEWQAKKAQEASAAKS 301

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+++R+P+  I+G+T+L++ +   +   K+  Y+  I +SS  LL+L+N IL++
Sbjct: 302 RFLFSMSHDIRTPMNAIMGYTELMEKNIGNA--EKEKDYLSKIHSSSKFLLDLINSILEM 359

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A +++G   LN     + D+L+ +        HE  +  +  +  +      D  +L +I
Sbjct: 360 ARIESGKETLNIKACNIFDVLDSLNSVFEKLAHEKGLEYQCTTKIQHPYIYCDPIKLEEI 419

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
              I+ N++ ++ +G  +I     ++G F   +++ G  + E      F  F       Q
Sbjct: 420 LLNIIGNSIKYTDEGMVLIQIEEGESGQFQCMIQDTGIGMSEAYLPHAFEDFSREKSGTQ 479

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT----INCRIPSKE 792
              +G GLGL+IV+S + L  G + ISS     TT     +  I +KE
Sbjct: 480 TSVKGTGLGLAIVKSLVELMNGTIEISSQVNQGTTTRMKFHFEI-AKE 526


>gi|159901042|ref|YP_001547289.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894081|gb|ABX07161.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 492

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 146/363 (40%), Gaps = 17/363 (4%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               + +   +  + +GV V    G+I L N A  ++                  A   R
Sbjct: 127 RRETQRERAILAAIDDGVIVCDQLGQIILLNTAAYNIIAM---------------AEAER 171

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                +  +L      + +  + +L   L        E         +     + + D  
Sbjct: 172 LQTNHEQPNLSLRFYAALEAVQPALDQALGRPHIKPAERVCFAGRTYRLSANPIWIDDRR 231

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
               A+ +   A  +++ +++ F+   ++ELRSPLT+I GF D+L  S     ++++  Y
Sbjct: 232 IGAVAILQDISARVESERLRSDFMALAAHELRSPLTSIRGFADMLLWSNPEHFSAEEISY 291

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  +   L  L+ND+++LA ++    +     + L  +L+ V      +     +++
Sbjct: 292 IEGIGRNIQRLTELMNDVVELARLETQRNEHTPQPVDLRQVLSAVLDEFRPRAERKKLQL 351

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +   +L     D   + QI   ++SNA+ ++ +   + ++  +   D +  V++ G  
Sbjct: 352 DCLLPNELPLLSLDPLHIRQISHHLISNAIKYTPEQGQIQIEVQQRIDDILVVVRDTGIG 411

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I       +F RF  N +       G GLGLSI ++ + ++ G +   S +E  TT    
Sbjct: 412 ISLREQPRIFGRFFRNDNPLSRAAGGTGLGLSIAKALVEMNHGSIYFESIEEEGTTFYVA 471

Query: 788 IPS 790
            P 
Sbjct: 472 FPL 474



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 21/157 (13%)

Query: 283 LNSFGEAGIAIDVSKE------ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            +  GE   +I+++ E       T   +      IL  +   + + DQ   +   N +  
Sbjct: 102 TDELGELAQSINLAAEHFTSLLDTQRRETQRERAILAAIDDGVIVCDQLGQIILLNTAAY 161

Query: 337 ELWEI-DLAFLATNPSNDEL-LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
            +  + +   L TN     L L F  +   +   L+    + +I    +           
Sbjct: 162 NIIAMAEAERLQTNHEQPNLSLRFYAALEAVQPALDQALGRPHIKPAERVCFA------- 214

Query: 395 PNGQTLHVIVTS----NPRGGTIWMFENLTVQVDLET 427
             G+T  +        + R G + + ++++ +V+ E 
Sbjct: 215 --GRTYRLSANPIWIDDRRIGAVAILQDISARVESER 249


>gi|125718371|ref|YP_001035504.1| histidine kinase [Streptococcus sanguinis SK36]
 gi|125498288|gb|ABN44954.1| Histidine kinase, putative [Streptococcus sanguinis SK36]
 gi|324993853|gb|EGC25772.1| sensor histidine kinase VicK [Streptococcus sanguinis SK405]
 gi|324994826|gb|EGC26739.1| sensor histidine kinase VicK [Streptococcus sanguinis SK678]
 gi|325687267|gb|EGD29289.1| sensor histidine kinase VicK [Streptococcus sanguinis SK72]
 gi|327463117|gb|EGF09438.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1]
 gi|327470648|gb|EGF16104.1| sensor histidine kinase VicK [Streptococcus sanguinis SK330]
 gi|327474728|gb|EGF20133.1| sensor histidine kinase VicK [Streptococcus sanguinis SK408]
 gi|327490285|gb|EGF22073.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1058]
 gi|328946752|gb|EGG40890.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1087]
 gi|332358682|gb|EGJ36505.1| sensor histidine kinase VicK [Streptococcus sanguinis SK355]
 gi|332358953|gb|EGJ36774.1| sensor histidine kinase VicK [Streptococcus sanguinis SK49]
 gi|332362448|gb|EGJ40248.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1056]
 gi|332367142|gb|EGJ44878.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1059]
          Length = 449

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 28/382 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I   N         + + +
Sbjct: 75  INDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I ++ +    Y    D  DL   +     D   S     E LS  V  ++++   
Sbjct: 135 QN-MSILDLLSISDEY----DLRDLITNVPELTID---SQDENGEYLSLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   ++            +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQDKE-----------ERERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +V+     +  ++ +V D+L L+ +D     L          +  +
Sbjct: 235 DEGALS--EPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSHLEVELTNFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +       I             D  +L Q+   I++NA+ +S  G T+ + 
Sbjct: 293 LNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQVIDNIMNNAIKYSPDGGTITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  H 
Sbjct: 353 IKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHQ 412

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +   S     +T    +P +
Sbjct: 413 GFIWAKSEYGVGSTFTIVLPYE 434


>gi|127511840|ref|YP_001093037.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126637135|gb|ABO22778.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 919

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 117/649 (18%), Positives = 227/649 (34%), Gaps = 79/649 (12%)

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK-----KRMI 253
            D   F     D+ G I+ AN +     E       K   E      +        + + 
Sbjct: 8   IDDSPFAQLICDKQGVIIEANDALYALFELNHEAVVKRPLEQLLTLNQTDSSDSLLEAIT 67

Query: 254 SSSALEKNFCETVSTLEHGNNK--SYKIV--RVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
            + AL     +++    H  ++   Y++    + N+                   L    
Sbjct: 68  HALALTLADRQSLDVRLHRQSRTPWYQLFPQALSNNRYLLLFVPQRDDPNINQAYLKRFE 127

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEI----DLAF-----LATNPSNDELLEFLR 360
             L +  + I  +D        +    EL ++     L++     + T     +   FL 
Sbjct: 128 AFLCSADIGIWHYDSTTGETRFSNRVKELLQLNHHSPLSWQSLQQMVTVKDRYKFDPFLA 187

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
            +     +L ++ ++ +   V +  E   +  +L NG               + + ++ T
Sbjct: 188 PSPSGKHKLAFR-FRIDSNDVARVYELFAEHIYLENGHFK-----------LLGLIKDQT 235

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
               +    N   + +   ++  + G   A     G+       ++   +  E       
Sbjct: 236 ESKAMLDALNEANESKKLALEAGNIGNWRAQIDEQGQWI-----WQWDQRANEMFCLNIE 290

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-------- 530
            I  +    +   +  D   + AA+  S  +     Q    +L +  + Y +        
Sbjct: 291 DI-GVLEKWAERIHPEDFPAVMAAVEDSLANGNPFHQEYRAILPNQEIIYILAKGKVSQG 349

Query: 531 ---------------IPLPNAQTMLTFVNVTDSVRAER---ALTEKNEALRKADEIKNSF 572
                           P+  A+  L     +   R ++    L    E    A + K+ F
Sbjct: 350 QNQQNSRIDGICIDQTPIYQARLALQESYRSLESRVKQRTTELQLAKERAEIASQAKSEF 409

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+ELR+P+  +IG  +LL    L   + ++   +E  S S+  L+ ++NDILD+  
Sbjct: 410 LSMISHELRTPMNAVIGALELLS---LADKSGEERDLIETASTSANNLIYILNDILDINK 466

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIF 691
           +++G M+L      L  ++ ++ +S +       +R  V    +L  +V  D  ++ QI 
Sbjct: 467 IESGKMQLEQQDFHLAGVIADLIKSFSPVASRQGLRFAVQEALELPDWVEGDIVKVRQIL 526

Query: 692 SKILSNAMDFS----SKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRF 742
           S +LSNAM F+     +   V L       +       F+V +NG  I +   K +F  F
Sbjct: 527 SNLLSNAMKFTHSTQEQTGCVSLNITVGEQNDIVTRVRFTVTDNGIGIDKATQKRLFTPF 586

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V       R   G GLGL+I     NL GG +S+ S           +P
Sbjct: 587 VQAQRSTTRNYGGTGLGLAICGKLTNLMGGSISLKSELGQGAQFCVELP 635


>gi|294054561|ref|YP_003548219.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613894|gb|ADE54049.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 1071

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 144/305 (47%), Gaps = 15/305 (4%)

Query: 500  FAAIITSFDDERKSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTE 557
            +   I S   +R  LQ T+ E   +  L  + +   N   M+   ++   V    + L  
Sbjct: 764  YQLRIRSMRRQRVLLQRTVKERTQELELLLAHVEAQNKALMMHREHLESMVNTRTKELEI 823

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                   +D IK +F+Q++S+E+R+P+  I+GF ++LK   L     +   +   I ++S
Sbjct: 824  AKNEAELSDRIKTAFLQNMSHEIRTPMNAIVGFLEMLKADDL--TREEHDDFSNIIRSNS 881

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIRIKVISDGK 676
              LL L++DILD+A ++AG ++++   ++LNDL+ E++     + H+     IK+  D  
Sbjct: 882  QTLLVLIDDILDMARLEAGELRIDREPVLLNDLMYELEAVFEQERHQLTKSEIKLYFDET 941

Query: 677  LGS----FVADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGS 728
                    + D  RL QI   +L NA+ F+ KG       +L    +N    F+V + G 
Sbjct: 942  YLISDFKLMTDPTRLRQILGNLLGNALKFTDKGRIWFSYRLLDEDHENPQIEFTVGDTGI 1001

Query: 729  SIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             IPE+    +F RF           RG GLGL+IVE    + GG V + S+    +    
Sbjct: 1002 GIPEEHLNVIFKRFRKGDGSDTGLYRGAGLGLAIVEKLTTIMGGRVVVESTPGQGSIFTI 1061

Query: 787  RIPSK 791
             +P +
Sbjct: 1062 LLPYE 1066


>gi|283479542|emb|CAY75458.1| sensor histidine kinase/response regulator [Erwinia pyrifoliae DSM
           12163]
          Length = 924

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L       ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LNS Q  Y+  I
Sbjct: 293 ELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTMLNSTQRDYLHTI 349

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +  
Sbjct: 350 ERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNI 409

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARDNGDFIFSVKNNGS 728
              +  + + D  R+ QI   +L NA+ F+  G+  + ++    + +  +    + + G 
Sbjct: 410 QSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTGI 469

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 470 GISEKQQSKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF 529

Query: 787 RI 788
            I
Sbjct: 530 HI 531


>gi|284037645|ref|YP_003387575.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283816938|gb|ADB38776.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 679

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 159/430 (36%), Gaps = 44/430 (10%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA----VFGPDG 454
              VI +  P+   +  F ++T +   ET Y   V +     +    G+     +    G
Sbjct: 253 WFEVIASPLPQQRVLISFLDITDRHQAETAYFHQVGLMQRISESGHIGIMTHRPILDKTG 312

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            I+    AF  + +  +  L  G  ++ +     R     D  +     +       +S 
Sbjct: 313 HIQDF--AFTYVNEQAQRWL--GVDLQLVTRQSVRSLLGGDDKEEMVRQMAQVVKTGESA 368

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------- 565
           Q    L    VL   I PL     + TF++VT   + E+      E  ++          
Sbjct: 369 QIETTLPDGRVLFLVISPLE-GGCVTTFMDVTQQRQVEQQKRYNAELEQQVAERTLALQK 427

Query: 566 ----------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                                  E+K  FV   S+E R+PLT I+    LL+  +     
Sbjct: 428 SMARLKQSKDELQVALAKEKQLSELKGRFVAMASHEFRTPLTTILSSAGLLELYQTSDQK 487

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K+ ++++ I  +   L +++ + L    +  G + +      L  L+NEV   +   + 
Sbjct: 488 DKRQKHIQRIRQAVKQLNSILEEFLSSDKLTEGQVTVRPVLCDLPRLVNEVILDLGDTLK 547

Query: 664 -ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            +  IR+ +     L     D   L +I   +LSNA+ +S  GS + L  +        +
Sbjct: 548 VQQTIRLSLSCPQPL---WVDESLLRKILINLLSNAIKYSGPGSIITLDGSCKPHLLTLT 604

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  I  +    +F RF   ++     G GLGL IV  ++ L  G +S+ S     T
Sbjct: 605 VSDQGIGISAEDQLHLFERFFRASNVTNISGTGLGLHIVRQYVELMNGQISLESELHQGT 664

Query: 783 TINCRIPSKE 792
            I   +P  E
Sbjct: 665 RITLTLPLTE 674



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 69/177 (38%), Gaps = 28/177 (15%)

Query: 276 SYKIVRVLNSFGEAGIA-IDVSKEITVNDQLTHTYEILHNLT----VAIA----IFDQNR 326
            ++++          I+ +D++          H   ++  ++    + I     I D+  
Sbjct: 253 WFEVIASPLPQQRVLISFLDITDRHQAETAYFHQVGLMQRISESGHIGIMTHRPILDKTG 312

Query: 327 YLQ-----FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           ++Q     + N        +DL  L T  S   LL          E++        +  V
Sbjct: 313 HIQDFAFTYVNEQAQRWLGVDLQ-LVTRQSVRSLL-----GGDDKEEMVR-----QMAQV 361

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET--KYNTLVKVQ 436
            K+ E+ +    LP+G+ L ++++    GG +  F ++T Q  +E   +YN  ++ Q
Sbjct: 362 VKTGESAQIETTLPDGRVLFLVISPL-EGGCVTTFMDVTQQRQVEQQKRYNAELEQQ 417



 Score = 42.2 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 107/311 (34%), Gaps = 46/311 (14%)

Query: 304 QLTHTYEILHNLTVAIAIF----DQNRYLQ-----FHNRSFVELWEID------LAFLAT 348
            +   Y +L  L  A+ ++    DQ  +L      + N++   +  +             
Sbjct: 4   FMELAYALLDALPQALVLYQPLTDQQGHLTDFTTRYFNQALKAITPLTDQQLQTQTLFQR 63

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD----------TWHLPNGQ 398
           +PS  + L+   +  K  +  +      ++   Y  +  + +          T   P G 
Sbjct: 64  HPSTRQHLDSFNALLKTQQGFSLDYHAPHLSKWYSMTFQYLNGDMCCRYDDITDQKPTGS 123

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP------ 452
           ++  +    P+G    + + +        +           ++    G+    P      
Sbjct: 124 SVQNLAEEQPQGLNHQLADLVKALQATNQQLLQQQDFLEGILNGSQNGLMSCAPVYNETD 183

Query: 453 ---DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-IITSFD 508
              D  I++ NPA   +      +L        I  T    +    G  L A  + T+  
Sbjct: 184 QIVDLCIEMVNPAASLINGLASEQL--------IGKTLLTVFPVLAGTPLMAGYLHTAQT 235

Query: 509 DERKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            + + L+   +  + +   E    PLP  + +++F+++TD  +AE A   +   +++  E
Sbjct: 236 GQVQRLEAHYQDDNVNGWFEVIASPLPQQRVLISFLDITDRHQAETAYFHQVGLMQRISE 295

Query: 568 IKNSFVQHVSY 578
             +  +  +++
Sbjct: 296 --SGHIGIMTH 304


>gi|224543643|ref|ZP_03684182.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523416|gb|EEF92521.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM
           15897]
          Length = 529

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 153/384 (39%), Gaps = 42/384 (10%)

Query: 412 TIWMFENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            I   ENL+ ++    +            +  + EG  +   +G I   N +   +    
Sbjct: 183 IIDTLENLSHRLRKSMRETRFEQDKINAILRKMEEGFILLDENGMILSVNDSAIKILGPL 242

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           + + +   HI                 +L  A+ ++   +R  L+     + D   + +I
Sbjct: 243 KEKDNLVDHI--------------SYPNLINALNSASKKQRIELK-----IHDFDYQCAI 283

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE-IKNSFVQHVSYELRSPLTNIIG 589
             LP                   AL   +    K  + ++  F   VS+EL++P+T I G
Sbjct: 284 SRLPFGT----------------ALFFVDITAMKNSQKMREEFFSSVSHELKTPITAIRG 327

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +++LL    +   N K    +  I    T + +L+NDIL L+ +D+  + +    + +  
Sbjct: 328 YSELLSQGFINDENQK-KMMLSKIQTEVTNMSSLINDILMLSRLDSDDLIVEKVPVKMQA 386

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ ++ Q     + + N+ +    D    +++ +  ++  + S ++SNA+ ++ +   V 
Sbjct: 387 LMKDISQDYEGLLLKYNVELHTDVDP--ITYIGNGSQIETLISNLVSNAIKYNKEDGHVY 444

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
           +       +    VK+ G  IP      VF RF        R   G GLGL+IV+  ++ 
Sbjct: 445 VHIYSKEDNMFIEVKDTGIGIPLADQGRVFERFYRVDKGRSRIKGGTGLGLAIVKHIVSY 504

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
           + G V + S     T I   +P+K
Sbjct: 505 NKGTVKLHSQLGEGTCITITLPNK 528


>gi|77463438|ref|YP_352942.1| signal transduction histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|126462294|ref|YP_001043408.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77387856|gb|ABA79041.1| signal transduction histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|126103958|gb|ABN76636.1| signal transduction histidine kinase [Rhodobacter sphaeroides ATCC
           17029]
          Length = 733

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 198/515 (38%), Gaps = 36/515 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSF-VELWEIDLAFLATNPSNDELLEFLRSAN- 363
            +    +  +    A+FD +  L   N  F + + +I    L    S    ++ +  +  
Sbjct: 87  QNLANAIETVQEGFALFDADDVLVLCNSRFGMHMLDI-QEHLKPGLSFGGYIDRVSRSRY 145

Query: 364 -KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             LPE    + W       +    +  +   + + + L V       GGT+ +  ++T  
Sbjct: 146 LALPEAETPEDWAVRRKRRHYDRHSIFNVRLIWD-RWLQVSEHRTADGGTVILQTDVTDL 204

Query: 423 VDLET-----KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + +E        +   +V   T+DH+++GV +F  +GR+   N    SL     NR   G
Sbjct: 205 IRIERLERGKMLDDQARVIRATLDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRLG 264

Query: 478 THIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                +    +   +  +G D            ER  L   L    + +L+     +P+ 
Sbjct: 265 VSFGYLLERFAHEISFGEGMDAAHLEAWVQARHERAPLSFELRRHDELILDVFAQEMPDR 324

Query: 537 QTMLTFVNVTDSVRAERALTEKNE------------------ALRKADEIKNSFVQHVSY 578
             +++F +VT    A  AL+  NE                     +A+  ++ FV   S+
Sbjct: 325 GFVMSFTDVTAERAAIEALSRANETLEARVMERTLELEDALGHAERANASRSRFVAAASH 384

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L  PL+    F   +    +     +  + +     +   +  ++  +LD++ +++G  
Sbjct: 385 DLLQPLSAAKLFIATIGDEAVA---PESREALTKAQKALDSVEGILGALLDISKLESGRA 441

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            ++   + L+ L+ ++    A       +R+ V+    +    +D   L +I   ++ NA
Sbjct: 442 AVSIQPVRLDRLMAQLSDEFAPIAAARGLRLTVLPSSAV--VASDPTYLRRILQNLIGNA 499

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLG 757
           + +++KG  V++ A    G     V + G  I E   +++F  F           G+GLG
Sbjct: 500 IRYTAKG-RVLVGARMTAGMVRLEVWDTGPGIAEADQEAIFKEFHRLDAPASPAEGMGLG 558

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L+IVE    L G  + + S     T    ++P  E
Sbjct: 559 LAIVERACGLLGHPLGLRSEIGRGTCFMLQVPRAE 593



 Score = 70.7 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 94/332 (28%), Gaps = 23/332 (6%)

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR-VLNSFGEAGIAIDVSK 297
              +  ++   +R          F   +       ++  ++        G   +  DV+ 
Sbjct: 149 PEAETPEDWAVRRKRRHYDRHSIFNVRLIW-----DRWLQVSEHRTADGGTVILQTDVTD 203

Query: 298 EITVND---------QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            I +           Q       L ++   + IFD    L   N+    L  I +     
Sbjct: 204 LIRIERLERGKMLDDQARVIRATLDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRL 263

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             S   LLE         E ++    +  + + ++ +          +   L V     P
Sbjct: 264 GVSFGYLLERFAHEISFGEGMDAAHLEAWVQARHERA-PLSFELRRHDELILDVFAQEMP 322

Query: 409 RGGTIWMFENLT-VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
             G +  F ++T  +  +E        ++   ++   E   +    G  + +N +     
Sbjct: 323 DRGFVMSFTDVTAERAAIEALSRANETLEARVMERTLE---LEDALGHAERANASRSRFV 379

Query: 468 KTEENRLSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDS 524
               + L        +  AT        +  +       + D     L   L++  L   
Sbjct: 380 AAASHDLLQPLSAAKLFIATIGDEAVAPESREALTKAQKALDSVEGILGALLDISKLESG 439

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
               SI P+   + M    +    + A R L 
Sbjct: 440 RAAVSIQPVRLDRLMAQLSDEFAPIAAARGLR 471


>gi|317499092|ref|ZP_07957371.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893612|gb|EFV15815.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 985

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 143/266 (53%), Gaps = 11/266 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N + +L   + T   +  +AL++   A   A++ K++F+ ++S+++R+P+  IIGFT L 
Sbjct: 440 NKKYILVMSDRTADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIRTPMNAIIGFTTLA 499

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++           Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+++
Sbjct: 500 VSNI--DNKKMVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDL 557

Query: 655 KQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K  I+ ++H   + + + + D        D+ RL QI   +LSNA+ F+  G  + ++  
Sbjct: 558 KTIISGQIHAKQLELYMDAMDVTNEDVYCDKTRLNQILLNLLSNAIKFTPAGGMISVRLK 617

Query: 714 ------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFI 765
                 R+   +   VK+NG  + ED  + +F+ F         + +G GLG++I ++ +
Sbjct: 618 QYPGTQRERQLYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVSRTQGTGLGMAITKNIV 677

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ GG++ I +     T    R+P +
Sbjct: 678 DMMGGNIEIQTEQGKGTEFIVRLPLR 703


>gi|226289104|gb|EEH44616.1| two-component sensor protein histidine protein kinase
            [Paracoccidioides brasiliensis Pb18]
          Length = 2333

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ +VS++LR+P+  +IG T+LLK +   SL+ +Q+ YV
Sbjct: 1804 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELLKKT---SLDREQNGYV 1860

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I   +  LL L+NDILD + ++AG MK+    + L D + E  +++        ++  
Sbjct: 1861 DSIRVCADTLLTLINDILDFSKLEAGKMKVTAIPLNLRDTILEAVRALCYTHRHRGLQTI 1920

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFS--V 723
               D    +   + D  RL QIF  +LSN+  F+ +GS V + A     ++G    +  V
Sbjct: 1921 EDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGS-VTVNAKSSVEEDGRIRITCKV 1979

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  IP +    +F  F        R   G GLGLSI ++ I  + GG + + S +  
Sbjct: 1980 VDTGIGIPGEQLVRLFRPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEEGV 2039

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2040 GTTVTFSL 2047


>gi|294677043|ref|YP_003577658.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
 gi|294475863|gb|ADE85251.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
          Length = 892

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 161/378 (42%), Gaps = 15/378 (3%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +      +         I    + V V   +G++   N A   ++       + G H+ +
Sbjct: 215 MRQTGSLSAAKARLEAVIGTSFDAVIVVDHEGKVLEFNGAAERVFGYSHAE-AVGQHLND 273

Query: 483 IAATCSRYYNESDGWDLFA--AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--- 537
           +    +    +  G+  +    +          LQ   +  S    E S+      +   
Sbjct: 274 LIVPEAMKSAKVAGFKRYRTGGVPRIAGHGLIGLQARRKDGSVFPAEISVTATRIGRKEI 333

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    ++TD V AE+ L +  +A    ++ +  FV  +S+E+R+PL  ++G  +LL+ +
Sbjct: 334 FVGYMRDITDRVAAEKELIDARDAAMAGEQAQAEFVAVMSHEMRTPLNGLLGTLELLRET 393

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L++ Q+  +  +  +  ILL+ VN+ LD+  +DAG + L+        +L+E+ Q 
Sbjct: 394 ---PLDASQAALLGSMQKAGEILLSHVNNTLDVERLDAGKLSLSREPFAPMSVLDEIVQM 450

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--R 714
            A        R++  + G+L  +   D  R+ Q+   ++ NA+ F+  G T+ L+A   R
Sbjct: 451 QAAGAGARGNRLETRAVGRLPDAVEGDAMRIRQVLLNLVGNAIKFTRDG-TITLEAEYHR 509

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
           D G   + V + G  IP+   + +F+ FV+       +  G GLGLSI    +    G +
Sbjct: 510 DQGQLEYRVIDTGIGIPQGETERIFDDFVTLDPELSREATGSGLGLSIARRLMRAMRGQI 569

Query: 773 SISSSDEGVTTINCRIPS 790
            + S     +     +P+
Sbjct: 570 GVESDPGQGSAFWITLPA 587


>gi|84385826|ref|ZP_00988856.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84379142|gb|EAP95995.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 808

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 129/302 (42%), Gaps = 12/302 (3%)

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
              +    I   F D +  L+G +  L   ++  +++        +    V +  R   A
Sbjct: 218 HNMEYLEQIEHQFTDLQDQLEGVIVKL---IITLALL-TFAFSFAIFIFRVFELKRNNLA 273

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
             E  +   KA+E K+ F+  +S+ELR+P+  ++G   ++K     +   +Q+Q    I 
Sbjct: 274 YQEAADKAEKANEAKSLFLATMSHELRTPMNGVLGIAQIIKEDSQSADTRQQAQ---III 330

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L+ ++NDILD + V+ G M+L YS   + D++  + +++     +  +   +   
Sbjct: 331 DSGQHLVTILNDILDFSKVEQGKMELEYSPFSVADVVTHLDKTLTPLAEDKGLAFTIKDH 390

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFSVKNNGSSIP 731
                  + D  R  QI   +  NA+ F+  G   +  L A          V + G  I 
Sbjct: 391 IPTHIQLIGDSARTRQILFNLAGNAVKFTESGKVEVEFLIAPPPPPSVNILVTDTGIGIA 450

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  + +F  F        R   G GLGLSIV+  + L GG ++++S     T     +P
Sbjct: 451 EDKIEHIFTAFEQAELSTTRKFGGTGLGLSIVKQLVELMGGTITVTSRLNFGTRFAISLP 510

Query: 790 SK 791
            +
Sbjct: 511 LE 512


>gi|332558316|ref|ZP_08412638.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
 gi|332276028|gb|EGJ21343.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
          Length = 733

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 198/515 (38%), Gaps = 36/515 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSF-VELWEIDLAFLATNPSNDELLEFLRSAN- 363
            +    +  +    A+FD +  L   N  F + + +I    L    S    ++ +  +  
Sbjct: 87  QNLANAIETVQEGFALFDADDVLVLCNSRFGMHMLDI-QEHLKPGLSFGGYIDRVSRSRY 145

Query: 364 -KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             LPE    + W       +    +  +   + + + L V       GGT+ +  ++T  
Sbjct: 146 LALPEAETPEDWAIRRKRRHYDRHSIFNVRLIWD-RWLQVSEHRTADGGTVILQTDVTDL 204

Query: 423 VDLET-----KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + +E        +   +V   T+DH+++GV +F  +GR+   N    SL     NR   G
Sbjct: 205 IRIERLERGKMLDDQARVIRATLDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRLG 264

Query: 478 THIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                +    +   +  +G D            ER  L   L    + +L+     +P+ 
Sbjct: 265 VSFGYLLERFAHEISFGEGMDAAHLEAWVQARHERAPLSFELRRHDELILDVFAQEMPDR 324

Query: 537 QTMLTFVNVTDSVRAERALTEKNE------------------ALRKADEIKNSFVQHVSY 578
             +++F +VT    A  AL+  NE                     +A+  ++ FV   S+
Sbjct: 325 GFVMSFTDVTAERAAIEALSRANETLEARVMERTLELEDALGHAERANASRSRFVAAASH 384

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L  PL+    F   +    +     +  + +     +   +  ++  +LD++ +++G  
Sbjct: 385 DLLQPLSAAKLFIATIGDEAVA---PESREALTKAQKALDSVEGILGALLDISKLESGRA 441

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            ++   + L+ L+ ++    A       +R+ V+    +    +D   L +I   ++ NA
Sbjct: 442 AVSIQPVRLDRLMAQLSDEFAPIAAARGLRLTVLPSSAV--VASDPTYLRRILQNLIGNA 499

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLG 757
           + +++KG  V++ A    G     V + G  I E   +++F  F           G+GLG
Sbjct: 500 IRYTAKG-RVLVGARMTAGMVRLEVWDTGPGIAEADQEAIFKEFHRLDAPASPAEGMGLG 558

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L+IVE    L G  + + S     T    ++P  E
Sbjct: 559 LAIVERACGLLGHPLGLRSEIGRGTCFMLQVPRAE 593



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 94/332 (28%), Gaps = 23/332 (6%)

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR-VLNSFGEAGIAIDVSK 297
              +  ++   +R          F   +       ++  ++        G   +  DV+ 
Sbjct: 149 PEAETPEDWAIRRKRRHYDRHSIFNVRLIW-----DRWLQVSEHRTADGGTVILQTDVTD 203

Query: 298 EITVND---------QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            I +           Q       L ++   + IFD    L   N+    L  I +     
Sbjct: 204 LIRIERLERGKMLDDQARVIRATLDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRL 263

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             S   LLE         E ++    +  + + ++ +          +   L V     P
Sbjct: 264 GVSFGYLLERFAHEISFGEGMDAAHLEAWVQARHERA-PLSFELRRHDELILDVFAQEMP 322

Query: 409 RGGTIWMFENLT-VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
             G +  F ++T  +  +E        ++   ++   E   +    G  + +N +     
Sbjct: 323 DRGFVMSFTDVTAERAAIEALSRANETLEARVMERTLE---LEDALGHAERANASRSRFV 379

Query: 468 KTEENRLSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDS 524
               + L        +  AT        +  +       + D     L   L++  L   
Sbjct: 380 AAASHDLLQPLSAAKLFIATIGDEAVAPESREALTKAQKALDSVEGILGALLDISKLESG 439

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
               SI P+   + M    +    + A R L 
Sbjct: 440 RAAVSIQPVRLDRLMAQLSDEFAPIAAARGLR 471


>gi|292491952|ref|YP_003527391.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580547|gb|ADE15004.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 1362

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 110/519 (21%), Positives = 206/519 (39%), Gaps = 39/519 (7%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            K   +         +L +  +     D+   ++ +  +  +L+ +    +   P +  + 
Sbjct: 713  KVEELTVTNNDLANLLQSPHITTLFLDREFRIKRYTPTITQLFNLIPTDIG-RPISHIVH 771

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
            +F      L E     T  EN+  + +   + +D W++   + L      +  GG +  F
Sbjct: 772  KFSNREALLKEAA---TVLENLKPMEQEVHSDEDRWYIQ--RILPYQTEEHHIGGVVVTF 826

Query: 417  ENLTVQVDLETKYNTLV-------KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
             ++T +  +E +   L+             ID +S+ V      G + L+N A  + +  
Sbjct: 827  IDITQRKQIENERQRLLVKIERERDKLRTLIDGISDEVWFCDAQGHLSLANRAAATAFGV 886

Query: 470  E-----ENRLSPGTHIRNI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            E        LS       I       R   E+  W        +  +E      T +L S
Sbjct: 887  ERTEALYQPLSAWLSRLEIYTPEGQPRTLEEAPLWRSLQGETLTHVEEIIRHPQTRQLRS 946

Query: 523  DSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              V   S  PL          +    ++T+    E AL E  E   +A   K+ F+   S
Sbjct: 947  RQV---SSAPLKTKTGEIMGAVAIARDITEEKEIETALREAKEKAVQASIHKSQFLATAS 1003

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            ++LR PL         L  S    L + +  + ++   A    + +L+N +LD+  ++AG
Sbjct: 1004 HDLRQPLQT----LSFLNDSLTEKLKDPEIRRLIDQQGALLRNMGDLLNTLLDINKLEAG 1059

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++K  ++   +  LLN ++        E  + ++++         +DR  L QI   +LS
Sbjct: 1060 MVKPQFTVFPVASLLNYLRNEFELHAREKGLNLRMVPCS--VMICSDRILLEQILENLLS 1117

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
            NA+  + +G  ++L   R + +    V + G  IP++  K +F  F    +  R QRRG+
Sbjct: 1118 NAIKHTDRG-KILLGCRRRSPNLRIEVWDTGIGIPQEQLKVIFQEFYQADNPARDQRRGL 1176

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP-SKE 792
            GLGLSIVE   +L    + I S+    +     +P +KE
Sbjct: 1177 GLGLSIVERLAHLLDHSLDIRSTPGKGSMFAIEVPMAKE 1215



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 43/167 (25%), Gaps = 18/167 (10%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
               +  + +        E      K+       + L D +   VW  D  G +  AN +
Sbjct: 820 GGVVVTFIDITQRKQIENERQRLLVKIERERDKLRTLIDGISDEVWFCDAQGHLSLANRA 879

Query: 222 YKKNTETEGIVF------------QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
                  E                +    E +    EE             +  E +   
Sbjct: 880 AATAFGVERTEALYQPLSAWLSRLEIYTPEGQPRTLEEAPLWRSLQGETLTHVEEIIRHP 939

Query: 270 EHGNNKSYKIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYE 310
           +    +S ++             G   IA D+++E  +   L    E
Sbjct: 940 QTRQLRSRQVSSAPLKTKTGEIMGAVAIARDITEEKEIETALREAKE 986


>gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1355

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 38/284 (13%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               +  +  +  + L++  +    A   K+ F+  +S+E+R+P+  +IG T LL  + L
Sbjct: 641 QWIGSEIERQQTAQELSQARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPL 700

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             +   Q  +VE I +SS  LL+L+NDILD + +++G + L      L   L E    +A
Sbjct: 701 SLV---QQDFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLA 757

Query: 660 TKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---- 713
           TK    ++ +    D       V D  R+ QI   +LSNA+ F+++G   V + A     
Sbjct: 758 TKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSVSAKPLFS 817

Query: 714 ----------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
                       +     +V + G  IP D    +F  F         Q  G GLGL+I 
Sbjct: 818 DLELTAKSMYSTHYQIEVAVSDTGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAIS 877

Query: 762 ESFINLHGGHVSISS-----------------SDEGVTTINCRI 788
           +    + GG + + S                 +    +T    I
Sbjct: 878 QRLAEMMGGKMWVVSGDAIGGHPPENWQINKDTPTQGSTFYFSI 921


>gi|94264450|ref|ZP_01288239.1| PAS [delta proteobacterium MLMS-1]
 gi|93455140|gb|EAT05362.1| PAS [delta proteobacterium MLMS-1]
          Length = 1089

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 145/349 (41%), Gaps = 29/349 (8%)

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           SN    +       R+ PG      A T +       G ++    +   D  +  ++  +
Sbjct: 394 SNREIMATTDWWRQRVHPGDLAAATAETAAWLAAACPGNNIHRYRMVRRDGTQLWVEDRI 453

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + L DS            + +   ++++   + E  L E   A   A+  K++F+ ++S+
Sbjct: 454 KALRDSSGRIR-------EIVGNHIDISARKKDEEKLREAKIAAEAANLAKSAFLANMSH 506

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  IIG ++L   +  G L ++Q   +E I +SS +LL ++NDILD + ++AG +
Sbjct: 507 EIRTPMNAIIGLSEL---TLQGELAAEQRDSLEKIHSSSQLLLGIINDILDYSKIEAGHL 563

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSN 697
           +L         L+  +            + +    D ++    + D  RL QIF+ +L+N
Sbjct: 564 QLAPHPFRPARLVERLGHLFRQNAAAKGLELVYHLDPEIPPVLLGDELRLGQIFTNLLAN 623

Query: 698 AMDFSSKGSTVILKAAR-------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           A+ F+ KG  V L+  R                    +V + G  I ++  K +F  F  
Sbjct: 624 ALKFTRKG-RVELRIQRLAAVAEAEADAAAAAVGLRCAVSDTGVGIDQEQRKRLFKPFSQ 682

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCRIP 789
                 R   G GLGL I    +   GG + + S     +T      +P
Sbjct: 683 ADDTTTRKYGGTGLGLVISARLVEQMGGRLQLESEPGRGSTFFFTITLP 731


>gi|186683928|ref|YP_001867124.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186466380|gb|ACC82181.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 750

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/534 (18%), Positives = 202/534 (37%), Gaps = 43/534 (8%)

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           +++ +      +A +++  ++             ++     AI   D    ++  N +  
Sbjct: 239 HRVQQRTQELAKANVSL-RAEIAERQRTQAALQALITASPRAIFTLDLEGNVKIWNPAAE 297

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            ++    A +  +P+   L + L   N L E +   T        Y   E  +      +
Sbjct: 298 RMFGWTEAEVIDHPNPIFLDDQLEEYNTLQESILQGT-------TYTRVELRRFK---KD 347

Query: 397 GQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
           G  + ++ ++ P         G + +  ++T Q   E +    V++    + + ++ V +
Sbjct: 348 GTAIDIVFSAAPLHDSDDSINGMVAVIADITHQKQQEEQ----VRLLQSVVVNTNDAVVI 403

Query: 450 FGPD-----G-RIKLSNPAFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNE-SDGWDLFA 501
                    G  I   N AF  +     E  L     I   A T     ++       + 
Sbjct: 404 TEAQPIGEPGPNIIYVNEAFTRITGYSLEEVLGKTPRILQGAKTSRAELDKVWTALSCWE 463

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            +     + RK         S+   E+SI+P+ +     T           R   ++   
Sbjct: 464 TVTVQVINYRKD-------GSEFWNEFSIVPVADQTGWYTHWISVQRDITGRKRLDEIRM 516

Query: 562 LRKADE----IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISAS 616
             + +     +K  F    S+E R+PL+  +    LL+  +    NS K+ + ++ I  S
Sbjct: 517 ALERERELSVLKTRFFSMASHEFRTPLSTALVAAQLLENCQDEWDNSSKRLRNLQRIQLS 576

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              ++ +++DIL +   + G ++ N   + L +  ++  + +     E +  +  +  GK
Sbjct: 577 VKNMVQILDDILTINRAETGKLEFNPKLLDLEEFCSDFVEEMRLSTDERH-TLSFVCQGK 635

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D + L  I S +L NA+ +S +G  V L     +   I  VK+ G  IP    K
Sbjct: 636 AVPASVDERLLRSILSNLLLNAIKYSPEGGNVHLSLEFKSDTVILQVKDRGIGIPLADQK 695

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F  F    +     G GLGL +V+  ++LH GH++I+S     TT    +P 
Sbjct: 696 QLFEPFHRGKNVKSIPGTGLGLVVVKKCVDLHQGHINITSEIGIGTTCAIALPL 749


>gi|171060040|ref|YP_001792389.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777485|gb|ACB35624.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 762

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 149/396 (37%), Gaps = 42/396 (10%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--------PG 477
           E++            D+L +G       G       AF  +    E  L           
Sbjct: 221 ESRLRDSEAQLRSIGDNLPDGFVYQFEMG---DGKRAFSYISAGVEKMLGLSPAALRVDA 277

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIIT-------SFDDERKSL----QGTLELLSDSVL 526
             +  + A  SR     D       +         +  D RK       G +  L+   +
Sbjct: 278 QPLFALMAPDSRAQYLQDEARCLRELTEYAGVLLFNPSDGRKVWLHVRSGPIRRLNGETV 337

Query: 527 ------EYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSY 578
                 + + + L  A+ +    N  +++  ER  AL++   A   A+  K SF+ ++S+
Sbjct: 338 WVGVAVDITKLKLAEAE-LERHRNHLEAMVEERTAALSDAKLAAEAANLAKGSFLANMSH 396

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  IIG + LL         + +   +  I AS   LL ++NDILDL+ ++AG  
Sbjct: 397 EIRTPMNAIIGLSALLLRKPQEPDTADK---LGLIEASGKHLLGIINDILDLSKIEAGKF 453

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+   + +  L   V   +A   H   I++K   D      + D  R+ Q    ++SNA
Sbjct: 454 HLSQERLDVRVLPVNVCSMVAEAAHAKGIKLKTELDFLPPRLLGDLTRITQALLNLVSNA 513

Query: 699 MDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR 751
           + F+  GS V ++A R+  D       F V + G  I       +F+ F           
Sbjct: 514 IKFTRTGS-VTVRAVREEEDQDSILLRFEVIDTGIGISAQAMSRLFSPFEQADASTVRNF 572

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            G GLGL I      L GG    +S     +T    
Sbjct: 573 GGTGLGLVITRRLAQLMGGDAGAASVLGEGSTFWFT 608


>gi|218529950|ref|YP_002420766.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum
            CM4]
 gi|218522253|gb|ACK82838.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum
            CM4]
          Length = 1937

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +N   +     +D L+E + +         +N     L K  +           + + 
Sbjct: 1117 ASFNRFSETHQSFLDQLTESIGIV---LNTIAANMRTEGLLKQSQLLTG------ELQSR 1167

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   +D  +L AA +   +D  K+ +  L+  ++ + E +   L   Q         
Sbjct: 1168 QEELKKTNDRLELQAASLQQSEDLLKNQRERLQQTNEELEEKA--RLLEIQKREVEGKNR 1225

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +   A+ AL EK E L      K+ F+ ++S+ELR+PL +++  + LL  ++ G+L  KQ
Sbjct: 1226 EVSIAKTALEEKAEQLSLTSRYKSQFLANMSHELRTPLNSLLILSKLLSENRDGNLTDKQ 1285

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++ + I+A+ T LL+L+NDILDL+ +++G + L    + L D+   + ++      E +
Sbjct: 1286 REFAKTINAAGTDLLSLINDILDLSKIESGTVSLEIGDVTLQDISENLNRTFRQLAEERH 1345

Query: 667  IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------- 717
            +   +  D  L  S   D +RL Q+   +LSNA  F+ KGS V LK     G        
Sbjct: 1346 LAFVIEVDPGLPRSLRTDSKRLQQVLRNLLSNAFKFTEKGS-VSLKIGSAEGSPLRAGTQ 1404

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                SV + G  I ED  + +F  F         +  G GLGL+I      L GG + + 
Sbjct: 1405 WIAMSVTDTGIGIAEDKQRIIFEAFQQADGTTSRKYGGTGLGLAISREIARLLGGEIVVE 1464

Query: 776  SSDEGVTTINCRIPSK 791
            S     +T    +P +
Sbjct: 1465 SRVGTGSTFTLFLPFE 1480


>gi|108758345|ref|YP_628621.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108462225|gb|ABF87410.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 869

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/509 (18%), Positives = 174/509 (34%), Gaps = 42/509 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                +         +L      +   D    L+F N     ++      L        +
Sbjct: 359 QATAALEASEARYRGLLETTPAPLLTVDAQGLLRFVNTEAERVFGYPREELLGREVEVLV 418

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG---- 411
            E L     L   L  +  +                    +G  L + V  +P  G    
Sbjct: 419 PEGLFGGRSLDTGLGERAIQGR----------------RKDGSPLSLEVRLSPVSGPEGP 462

Query: 412 -TIWMFENLTVQ---VDLETKYNTLVKVQG----ETIDHLSEGVAVFGPDGRIKLSNPAF 463
             + +  +++ +   +    +     ++Q       +DH   G+     DG   ++NP  
Sbjct: 463 SVLAVVRDVSERERYLSKVQRAREEAEMQRSQVQALLDHTPVGIVFAEADGGGLVANPVA 522

Query: 464 RSLWKTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
             L       +S     I  +  T        +   +  A++T        L G  E L 
Sbjct: 523 EQLLGRPLKGVSLAMTGINPVVLTTDGKPARREDVPIVRALLTG------QLAGPEEFL- 575

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             +L      LP   T       +  VR   +  +      + D ++  +V  +S++LR+
Sbjct: 576 --ILHPDGSRLPVLMTAAPVFGPSGKVRGVVSTAQDVTTRHELDRLREEYVSLISHDLRN 633

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I     LL+ +       ++    E I  S   +  ++ D+L+ + +++    L  
Sbjct: 634 PLHTISLRVGLLRRALREQNLEREESMTEAIQRSVAWMNTMIEDLLEGSRLESQRETLRR 693

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               L   L EV +       +   R  +   G L     D  RL ++ + +LSNA  +S
Sbjct: 694 EPRDLARFLEEVME--RDVAPDVRERFHLEVPGALPPIWMDAARLERVMANLLSNAAKYS 751

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
             G  + ++A       + SVK+ G  +  +    VF+++      G    +G+GLGL I
Sbjct: 752 PGGQPITVRAQLQPEQVVVSVKDLGPGLSPEDAARVFDKYFRTQKSGASDAKGLGLGLYI 811

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
               I  HGG + + S     +T +  +P
Sbjct: 812 SRLIIEAHGGRIWVESEPGQGSTFSFSLP 840



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/447 (13%), Positives = 140/447 (31%), Gaps = 56/447 (12%)

Query: 152 AIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ 211
            I      +G  A + + +    + E A        L    + ++ L ++    +   D 
Sbjct: 329 PIFATFVSAGGAALVLLSARALDHIE-AHRQQATAALEASEARYRGLLETTPAPLLTVDA 387

Query: 212 AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
            G + + N    +     G   ++ +G   ++    + + +    +L+    E       
Sbjct: 388 QGLLRFVNT---EAERVFGYPREELLGREVEVL---VPEGLFGGRSLDTGLGERA---IQ 438

Query: 272 GNNK-------SYKIVRVLNSFGEAGIAI--DVSK-----------EITVNDQLTHTYEI 311
           G  K         ++  V    G + +A+  DVS+                 Q +    +
Sbjct: 439 GRRKDGSPLSLEVRLSPVSGPEGPSVLAVVRDVSERERYLSKVQRAREEAEMQRSQVQAL 498

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L +  V I   + +      N    +L    L  ++   +    +  L +  K   + + 
Sbjct: 499 LDHTPVGIVFAEADGGGLVANPVAEQLLGRPLKGVSLAMTGINPV-VLTTDGKPARREDV 557

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-------RGGTIWMFENLTVQVD 424
              +  +       E  +     P+G  L V++T+ P         G +   +++T + +
Sbjct: 558 PIVRALLTGQLAGPE--EFLILHPDGSRLPVLMTAAPVFGPSGKVRGVVSTAQDVTTRHE 615

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           L+      V +    + +    +++     R+ L   A R      E  ++    I+   
Sbjct: 616 LDRLREEYVSLISHDLRNPLHTISL-----RVGLLRRALREQNLEREESMTEA--IQRSV 668

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTM 539
           A  +    +        +   +   E + L   LE + +      V E   + +P A   
Sbjct: 669 AWMNTMIEDLLEGSRLESQRETLRREPRDLARFLEEVMERDVAPDVRERFHLEVPGA--- 725

Query: 540 LTFVNVTDSVRAERALTEKNEALRKAD 566
                  D+ R ER +        K  
Sbjct: 726 -LPPIWMDAARLERVMANLLSNAAKYS 751



 Score = 37.6 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 18/212 (8%)

Query: 21  SCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENN 80
             K+ +F T            ++L+  R +L           + +    ++Y  LL    
Sbjct: 325 EAKLPIFATFVSAGG----AALVLLSAR-ALDHIEAHRQQATAALEASEARYRGLLETTP 379

Query: 81  CLTIVWDGK------DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFH-HYIKLSKATEK 133
              +  D +      +   E +    +   + +    L+    +           +A + 
Sbjct: 380 APLLTVDAQGLLRFVNTEAERVFGYPREELLGREVEVLVPEGLFGGRSLDTGLGERAIQG 439

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
            RK+G    L           + G   G      +  +      L++     ++     S
Sbjct: 440 RRKDGSPLSLEVRLSP-----VSG-PEGPSVLAVVRDVSERERYLSKVQRAREEAEMQRS 493

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
             + L D     +   +  G  L AN   ++ 
Sbjct: 494 QVQALLDHTPVGIVFAEADGGGLVANPVAEQL 525


>gi|325263100|ref|ZP_08129835.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031493|gb|EGB92773.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 959

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/557 (20%), Positives = 215/557 (38%), Gaps = 65/557 (11%)

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVE 337
                G        S     N + +H  + L  L       I  F   +         + 
Sbjct: 140 FPVEAGREAFQRLQSALNLKNKEYSHQAKFLEQLYNTVPCGILQFSTEKE-----HEVIS 194

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL--P 395
           L  +   F   + S +   + ++S  +  +  ++      I  +  + E      H   P
Sbjct: 195 LNRMTWEFYGYS-SEEAYRQEIKSPLQTVQDKDYDWIMSIIDGLELNGEPASYRRHCVKP 253

Query: 396 NGQTLHV------IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH--LSEGV 447
            G+   +      IV SN       +F ++T +V LE     + + Q   +++  L   +
Sbjct: 254 GGEEAWINVAMGRIVDSNGEEVIQAVFTDITGRVQLE-----MAQEQERILENRFLRAAI 308

Query: 448 AVFGPDGRIKLS-----NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL--- 499
               P   + +S     N     +   +E  +       ++      +   S   D    
Sbjct: 309 YTVYP---LIMSVNLTKNTYKCFVDNQKEYSIPVKGTYTDLMTKSLPFIYPSYQEDFASI 365

Query: 500 --FAAIITSFDD-ER--------KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                ++  F++ ER        K L G    L+  V+ Y   P  N    +  V + D+
Sbjct: 366 WDREELLKRFENGEREIYMELKGKGLDGVYHWLAIHVI-YVENPFNNDVLAIDLVQLLDA 424

Query: 549 VRAERA-----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
            R E+A     L +   + + A+  K+ F+  +S+++R+P+  IIG + +    +L + +
Sbjct: 425 QRQEQARQEQLLRDALSSAKAANRAKSDFLSRMSHDIRTPMNAIIGMSTI---GQLKNED 481

Query: 604 SK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +K      + I ASS  LL+L+NDILD++ ++ G M++ +        ++EV Q I  + 
Sbjct: 482 TKTVKDCFQKIDASSRYLLSLINDILDMSRIENGKMEIAHEIFDFKAFVDEVNQIIYPQT 541

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----- 716
            E  +   +     L + ++ D  R+ QI   +LSN++ F+  G  + +    +      
Sbjct: 542 VEKEVDYDMRCREPLEAQYIGDSLRMKQILMNLLSNSLKFTPSGGYISIDIKEERRTNGF 601

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F V++ G  + +   + VF  F        R   G GLGLSIV + + L GG + +
Sbjct: 602 AYMEFVVQDTGIGMSDQFMQKVFLPFEQEEPGNARNNVGSGLGLSIVYNLVQLMGGSIQV 661

Query: 775 SSSDEGVTTINCRIPSK 791
            S     TT    +P +
Sbjct: 662 KSEKNAGTTFIVSVPFQ 678


>gi|308187945|ref|YP_003932076.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
 gi|308058455|gb|ADO10627.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
          Length = 911

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 16/244 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+ ++S+ELR+PL  ++GFT  +LKT     L + Q  Y++ 
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQ----LRTTQRDYMQT 333

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++ND+LD + ++AG + L      L   L+E    +A   HE  + + V+
Sbjct: 334 IERSANNLLSIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHEKGLELTVV 393

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKN 725
            D  +  + + D  RL QI   ++ NA+ F+ KG         ++  +R   +    V++
Sbjct: 394 CDSSVPDNVIGDALRLQQILINLIGNAIKFTEKGYIGLRVGQRVITQSRV--ELEIQVED 451

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I E     +F  F        RR  G GLGL I +  +   GG ++ SS  +  +T
Sbjct: 452 SGIGISEQQQTQLFQAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGST 511

Query: 784 INCR 787
              R
Sbjct: 512 FMIR 515


>gi|302916671|ref|XP_003052146.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733085|gb|EEU46433.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1288

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  
Sbjct: 692 QRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNI 748

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +   
Sbjct: 749 VNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKTLAVKANEKFLDLTYK 808

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-------FSV 723
            D  +    + D  RL QI   ++ NA+ F+  G   + +K   +  +         F V
Sbjct: 809 VDSSVPDYVIGDSFRLRQIILNLVGNAIKFTEHGEVSLTIKERVEQRNVRPGEYAVEFIV 868

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG + + S     
Sbjct: 869 EDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGDLWVISEQGKG 928

Query: 782 TTINCR 787
           +  +  
Sbjct: 929 SEFHFT 934


>gi|223938486|ref|ZP_03630379.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223892905|gb|EEF59373.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 392

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 154/375 (41%), Gaps = 33/375 (8%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q +   +       Q    + ++EGV +    G ++L N + +  +   +         
Sbjct: 41  AQREHGLEITQRKAEQQALFNSMTEGVLILDHAGHVQLVNKSLQEFFSINK--------- 91

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPL--PNA 536
                   +   E+      A +    + ER  K  +  L   ++  LE +   +     
Sbjct: 92  ----DVRGQTIMEAFRLQELAELARRAEQERLVKGFELELNGTNNRRLEVNAATVTGREG 147

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               T +   D  R           L++ +  +  FV +VS+ELR+PL+ I GF + L  
Sbjct: 148 GQHGTIMVFHDLTR-----------LKELENTRQEFVANVSHELRTPLSLIKGFVETLID 196

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +     ++++  I   +  L  L+ D+L ++ +++G + +N + + LN+ +     
Sbjct: 197 GAKDN-PELCTRFLGTIEKHTDRLTFLIEDLLTISKLESGQIVMNLNEVNLNNEVGRAVD 255

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            + ++    N++++      L +  AD  RL Q+   ++ NA+ +   G  V +      
Sbjct: 256 DLQSRASGKNVKLQNTLAEDLKA-RADADRLQQVLFNLIENAIKYGRTGGNVTIGGKALP 314

Query: 717 GD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
           GD     VK++G  IP++  + VF RF         +  G GLGL+IV+  +  HGG V 
Sbjct: 315 GDKVEIWVKDDGPGIPDEARERVFERFYRVDRARSRETGGTGLGLAIVKHIVQAHGGEVW 374

Query: 774 ISSSDEGVTTINCRI 788
           +SS     TT    +
Sbjct: 375 VSSEPGQGTTFYFTL 389



 Score = 37.6 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 8/132 (6%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +  +      + +++T  + I D   ++Q  N+S  E + I+             L+ L
Sbjct: 48  EITQRKAEQQALFNSMTEGVLILDHAGHVQLVNKSLQEFFSINKDVRGQTIMEAFRLQEL 107

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
               +  EQ       E +   ++      +   L       V      + GTI +F +L
Sbjct: 108 AELARRAEQ-------ERLVKGFELELNGTNNRRLEVNAAT-VTGREGGQHGTIMVFHDL 159

Query: 420 TVQVDLETKYNT 431
           T   +LE     
Sbjct: 160 TRLKELENTRQE 171


>gi|146309327|ref|YP_001189792.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577528|gb|ABP87060.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 965

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 3/229 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + + +K+ FV  VS+ELR+PLT I G   L+    LG +     Q +    A+S  L +L
Sbjct: 482 RIERLKSEFVSTVSHELRTPLTAIAGSLGLINGGALGVVPEGMRQMLSIAQANSQRLSHL 541

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+LD+  ++AG M+ +     L   L E   S      +  ++++++ D        D
Sbjct: 542 INDLLDMDKLEAGKMQFDLQPCELAGQLEEALASNQAYAAQRQVQLRLL-DCPPVRVRVD 600

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RL Q+ +  +SNA+ +S     V+L+A R +      V + GS I       +F +F 
Sbjct: 601 NMRLQQVLANFISNAVKYSPPAGEVLLRAERRDTRVRVEVSDQGSGIAAAFRDRIFAKFS 660

Query: 744 SNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                   ++ G GLGL+I +  I   GG +   S     +T    +P 
Sbjct: 661 QADASDSREKGGTGLGLAISKELIERMGGQIGFDSVVGQGSTFWFELPL 709


>gi|322700316|gb|EFY92072.1| putative histidine kinase HHK1p [Metarhizium acridum CQMa 102]
          Length = 2549

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 18/231 (7%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ +VS+ELR+PL  +IG ++LL+ S    LN +Q +  + I  S+ +LL ++NDILD +
Sbjct: 1968 FLANVSHELRTPLNGVIGNSELLRDS---DLNREQLEMADSIRVSADLLLTVINDILDFS 2024

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSI----ATKMHENNIRIKVISDGKLGSFVADRQRL 687
             ++A  MKL        +++ EV +++      K  + N++I    +        D  RL
Sbjct: 2025 KMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLPPMLIYGDPIRL 2084

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
             Q+   ++ N++ F+  GS V + A      +D+    F V++ G  IP      +F  F
Sbjct: 2085 HQVLGNLIGNSLKFTEDGS-VTIGARLDAETKDSATLTFWVRDTGIGIPAQQLAKLFQPF 2143

Query: 743  VSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTT--INCRI 788
                     +  G GLGLSI +S I  +  G + + S +   TT       
Sbjct: 2144 SQADASTARKYGGSGLGLSICKSLIEIMMKGKIQLESEESEGTTAWFTVTF 2194


>gi|284036575|ref|YP_003386505.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
 gi|283815868|gb|ADB37706.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
          Length = 1043

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/522 (19%), Positives = 192/522 (36%), Gaps = 32/522 (6%)

Query: 288  EAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
              G+ ID + +      L         ++ NL  A+   D      + N ++ E+    +
Sbjct: 535  MIGVVIDQTSQRQAEHSLQESELRYRSLVDNLKEAVFQTDTFGMWTYLNPAWEEITGFSI 594

Query: 344  AFLATNPSNDELLEFL--RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
            A           LE++      +  E       ++  +  ++     K   +        
Sbjct: 595  AESLG----TSFLEYVFPEDQKRNLELFEPLMARQKSYCRHEIRYVSKAGGYRWIEVFAR 650

Query: 402  VIVTS-NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLS 459
            V V   N   GT     ++T +   E       +      ++L E   +   +   +   
Sbjct: 651  VTVNEDNELTGTTGTLTDITERKLAEEALRESEQRFRAIAENLDELFWIRDSENLDVLYM 710

Query: 460  NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII-----TSFDDERKSL 514
            N AF  L       L                  E D   L  A       T F    +  
Sbjct: 711  NSAFERLSGISMAELYQNP------RALLSIVPEEDQPLLIQAFRQPEPGTDFQFRARHQ 764

Query: 515  QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             G+L      +          +  +    ++T+ V  +R L+E  E  R  + +K+ F+ 
Sbjct: 765  DGSLRYFHVRLFTMERGYGKQSGRIGVGTDITNVVENKRLLSESLEKERSLNTLKSQFIS 824

Query: 575  HVSYELRSPLTNIIGFTDLLK----TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
              S++ R+PLT+I    DL++     +     N+   +Y   IS   T L  L+ D L L
Sbjct: 825  IASHQFRTPLTSIQSSIDLIQYYISKNNEFPFNNIIQKYTGQISQQITFLEELIMDTLTL 884

Query: 631  ATVDAGIMKLNYSTIVLNDLLNEV-KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
            + ++ G +++N     L   + +V   + + +    +++  +I  G+  +   D + +  
Sbjct: 885  SKLEEGKVQVNLQKTDLKTFIQDVIVSTFSNQADGRSVQQAMI--GEPMAVWVDTKLMSH 942

Query: 690  IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            +   +L+NA  FSS     +L      G    SV + G  +P     ++F++F   ++  
Sbjct: 943  VLINLLANAFKFSSADP--LLTVRYTPGSVFISVSDKGIGVPAHELPNLFSKFFRASNAR 1000

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            Q  G GLGL+I   +++L  GH+ ++S     TT    IP +
Sbjct: 1001 QINGTGLGLAICREYMHLQQGHIEVNSEVGVGTTFTITIPIQ 1042



 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 11/151 (7%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQK 235
           ++ E  L  + L      F+ + ++LD L W RD +  D+L+ N ++++ +        +
Sbjct: 668 DITERKLAEEALRESEQRFRAIAENLDELFWIRDSENLDVLYMNSAFERLSGISMAELYQ 727

Query: 236 AIGESRKLFKEEIKK---RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS------F 286
                  +  EE +    +         +F       + G+ + + +             
Sbjct: 728 NPRALLSIVPEEDQPLLIQAFRQPEPGTDFQFRARH-QDGSLRYFHVRLFTMERGYGKQS 786

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
           G  G+  D++  +     L+ + E   +L  
Sbjct: 787 GRIGVGTDITNVVENKRLLSESLEKERSLNT 817


>gi|82702621|ref|YP_412187.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410686|gb|ABB74795.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 606

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 141/351 (40%), Gaps = 18/351 (5%)

Query: 453 DGRIKLSNPAFRS-----LWKTEENRLSPGTHIRNIAATCSRYYN-----ESDGWDLFAA 502
           DG     N ++       L K          HI +I     R+       ES   +    
Sbjct: 104 DGTKDYFNESWFEYTGVGLGKLLGWAWVDLIHIEDIEENLKRWKQSLRTGESFWMENRIR 163

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
             T       S    +      +  +    +   +T +    +   +  ER + +  E  
Sbjct: 164 QATGNYRWHSSCATPIRNAGGGIWMWVGYCMDIHETKMKTEELGRFLAKEREMRKDAE-- 221

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            + +  K+ F   +S+ELR+PL  I+G++ L+    + S      + +E I  ++ I   
Sbjct: 222 -RVNHSKDEFFAMLSHELRNPLNAILGWSQLILQGTMNS--ESVRKGIETIERNAKIQNK 278

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ D+ +++ + AG + L    I L+ L   V  S         +R++ I D ++G  +A
Sbjct: 279 LIEDLFEMSRITAGKVTLELLRIDLSSLTEAVVDSAVPVAEAKKVRLRKIIDSEVGFVLA 338

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  R  Q+   +LSNA+ F+     V +   R        VK++G  I  +    VF+RF
Sbjct: 339 DENRFQQVLWNLLSNAIKFTPAEGEVEIHVRRAGSRAEVKVKDSGIGIKREFLPHVFDRF 398

Query: 743 VSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
                    Q+ G+GLGL+IV+  + LH G V   S+ +   +     +P 
Sbjct: 399 RQADSPASRQQIGLGLGLAIVKELVLLHRGTVIAESNGEGKGSVFTVSLPL 449


>gi|323485533|ref|ZP_08090879.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum
            WAL-14163]
 gi|323401181|gb|EGA93533.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum
            WAL-14163]
          Length = 1312

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 116/733 (15%), Positives = 262/733 (35%), Gaps = 75/733 (10%)

Query: 116  ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR-------I 168
            E WL+  +  +  + T +     ++F  +             ++ GS  ++        I
Sbjct: 451  ETWLRMGYIHEEDQKTYR-----KAFADIDNGSLQEEFSARAKIPGSDRWIWMNFRCNVI 505

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW----ANISY-K 223
                G       T     +       F  +        W  D     +        +Y  
Sbjct: 506  CDDTGRAIRTICTAENIDRYKELEQTFFEVMRQNGVTSWKYDMERQAVLEGNKVVSAYGL 565

Query: 224  KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VR 281
               + +  + +  +       K  +  + I     E +    V   + G     ++    
Sbjct: 566  HAHQIQEGLIEGKLFHPEDATKARLLLQHIREGEREVSGIFRVFDKKAGEYSWIRLSYTV 625

Query: 282  VLNSFG----EAGIAIDVSKEITVNDQLTHTY---------EIL--------HNLTVAIA 320
            ++++ G      G A+D+S+EI    +              + L         N+   + 
Sbjct: 626  LVDADGIRRTALGSAMDISREIQHRQKFEEMLLLHKNKKNLDTLLTGYCSLKENIIKGLN 685

Query: 321  IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE---------QLNW 371
             F    + Q +     E +      +       + L+   +   L +          + +
Sbjct: 686  DFSGQDFGQRYGSVRDEFFTRFADAIVDEKERSQFLDTYLAKPLLADFAKGISNHNNIYY 745

Query: 372  KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
              +++    +Y   + + DT   P+   +   +T +     +   + +   V+ E  +  
Sbjct: 746  CKFRDEDEGLY--VQVNVDTMLAPDKNDVIGFLTVSDMSQQVIAEKIINRVVEQEFDFIA 803

Query: 432  LVKVQGETIDHLSEGVAVFGPDGR-----IKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            L+ +    ID + + +  +    R     +++ N     + + E    S    I+ I   
Sbjct: 804  LIDIASGNIDRIIDRMGEYDHPARGENYDMRVGNGLLTYVVEEEREACSNTNTIQGILKG 863

Query: 487  CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                 N+   +    +I+     +R+    T     D+  +  +      +T +T   + 
Sbjct: 864  LGEAGND---YQTAYSIVNPKTGKRERKLWTFSYFDDTKKKVILT-----RTDMTATYLK 915

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +  + +R L+E  E  + A++ K+ F+  +S+++R+P+  IIG T+L  +    S   + 
Sbjct: 916  EQEQ-QRNLSEALEFAKAANKAKSDFLAAMSHDIRTPMNAIIGMTELALSDL--SDREQI 972

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +    I +SS  L++++NDILD++ +++G  ++        +   ++ + IA       
Sbjct: 973  HESFTTIKSSSAHLISIINDILDISRIESGKAEMLQEQFSSREEHQKIVKRIAPLAEAKG 1032

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFI 720
            +      D +    + D  RL ++   +LSNA+ F+ +G  V            D+    
Sbjct: 1033 LVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIKFTPEGGRVDYSFAELPCCRPDHILCR 1092

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +V + G  + E     +F  F    ++  G   G GLG+SIV+S + L GG + + S  
Sbjct: 1093 ITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVEGTGLGMSIVKSTVELSGGSIEVESEP 1152

Query: 779  EGVTTINCRIPSK 791
               +    +IP +
Sbjct: 1153 GRGSKFIVKIPIR 1165



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 87/292 (29%), Gaps = 37/292 (12%)

Query: 306 THTYEILHNLTVAIAIFDQNRY--LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           T    ++  +   +A++  +    +Q+ ++   EL                +++   SA 
Sbjct: 139 TKLQNVIDAIPGGVAVYRVSDVFDMQYFSKGVPELTGYTPE------EYRRVIKDEPSAM 192

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG------TIWMFE 417
              E       K    + + +S   +   +  +G T+ V + +   G          ++ 
Sbjct: 193 PSSEDTQTAMRKLRYAAEHNASADFEFRMYHRSGDTVWVRIQAKVIGYEDGYPLLHCVYH 252

Query: 418 NLTVQVDLETKY-------NTLVKVQGETIDHLSEGVA------------VFGPDGRI-- 456
           N+T +   E +        + L+    ++I++   G+             +F   G +  
Sbjct: 253 NITARKKAELELLKARQENDRLLAEYSDSINNSPGGLVTIEITGAGMPFPIFVSQGFLNI 312

Query: 457 -KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSL 514
            +++   F  ++            I+ + A   R     D   D F  +           
Sbjct: 313 TRMTREQFYQVYVDSAFDGLHPDDIQRVIAAYRRLQKPGDQMDDTFRLVCGDGTYVWVQA 372

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           + TL       + Y        +              E+A+   N    + D
Sbjct: 373 RATLTEREGRRIIYIGYLDATDRIEAQKKQYLQQQALEQAIDHSNLMFWEYD 424


>gi|86356371|ref|YP_468263.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CFN 42]
 gi|86280473|gb|ABC89536.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CFN 42]
          Length = 1266

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/598 (18%), Positives = 225/598 (37%), Gaps = 46/598 (7%)

Query: 224  KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
            +    E     +AI              +  ++  E  F   V  L    + + +   + 
Sbjct: 680  EAAPFEERAAPEAITGETPAADTADAASVEETAPQEAIFENAVDPL--REDAAEETGAIA 737

Query: 284  NSFGEAGIAIDVSKEITVNDQLTHTYE--------ILHNLTVAIAIFDQNRYLQFHNRSF 335
                  G+   VS+   +   +    +         +  L VA+ I   +  L   N  F
Sbjct: 738  EDEATEGLEETVSQIEVLTSFIPPRVKMIDGLSAGTVDQLPVAVLIHVGDA-LIHANPEF 796

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
            + L                 L+ LR    +   L  +  +E             D    P
Sbjct: 797  MRLTG------------YHSLDALREVGGIEALLQRRELEEKAAGSGTMMLVKADDTLTP 844

Query: 396  NGQTLHVIVTSNPRGGTIWMF-----------ENLTV---QVDLET--KYNTLVKVQGET 439
                L  +   +     + +             N +    +  +E   K    V+     
Sbjct: 845  VTARLQSVRWEDANALMLALMPVEGKEDGRGDSNRSEARPERMVEKVAKLQVEVEELRSI 904

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            ++  ++GV V G +G I+  N +  +L+  +E   + G     + A  S+         L
Sbjct: 905  LETATDGVVVIGTEGDIRSMNRSASALFNYDEQE-TRGKPFVMLFAHESQKAVLDYLNGL 963

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEK 558
                + S  ++ + + G         L  ++  L ++        ++T   R E  L   
Sbjct: 964  AGHGVASVLNDGREVIGREAGGGFVPLFMTMGRLTSSNGYCAVIRDITQWKRTEDELRNA 1023

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASS 617
              A   A+  K  F+  VS+E+R+PL  IIGF+D++   + G + + +  +Y   I  S 
Sbjct: 1024 KGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRSG 1083

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              +L++VND+LD++ ++AG M L+++ + LN+ ++E    +  + +   + I+      +
Sbjct: 1084 RHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSHSV 1143

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCK 736
               VAD + + QI   ILSNA+ F+  G  +++  + + NG  +  V++ G  +      
Sbjct: 1144 PEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRAELD 1203

Query: 737  SVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                 F   +    R    G GLGL + ++ ++ +    SI+S+    T +    PS+
Sbjct: 1204 HAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAIFSINSAPNEGTLVEITFPSQ 1261



 Score = 41.1 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 49/174 (28%), Gaps = 20/174 (11%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR---- 251
               D L   V        ++ AN  + + T    +   + +G    L +    +     
Sbjct: 771 AGTVDQLPVAVLIHVGDA-LIHANPEFMRLTGYHSLDALREVGGIEALLQRRELEEKAAG 829

Query: 252 -----MISSSALEKNFCETVSTL--EHGNNKSYKIVRVLNSF--------GEAGIAIDVS 296
                ++ +          + ++  E  N     ++ V             EA     V 
Sbjct: 830 SGTMMLVKADDTLTPVTARLQSVRWEDANALMLALMPVEGKEDGRGDSNRSEARPERMVE 889

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           K   +  ++     IL   T  + +      ++  NRS   L+  D       P
Sbjct: 890 KVAKLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKP 943


>gi|319651161|ref|ZP_08005293.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2]
 gi|317397143|gb|EFV77849.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2]
          Length = 468

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 118/246 (47%), Gaps = 4/246 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +   A    + +++K DE K  F+ +VS+ELR+P++ + G+++ L +    S   +Q
Sbjct: 221 EIGQLANAFNHMSSSIQKEDEKKKDFLANVSHELRTPISYVKGYSEALISEMAESEEDRQ 280

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ I   S  +  LV D+LDL+ +++   KL    + L  L+ +  +     + E N
Sbjct: 281 K-YLQLILRESKRMERLVGDLLDLSKLESDEYKLEKMPLPLGQLIEDAIEKYKPILREKN 339

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + ++   D ++     D  R+ QI   I+ N++ ++++G   I  +       +  +++ 
Sbjct: 340 LDLQYRLDPEVI-INGDEGRIEQIIQNIMDNSIRYTAEGRISIRLSQEKEDKCVIEIEDT 398

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E+    +  RF        R   G GLGL+I E  + LH G +++ S     TT+
Sbjct: 399 GIGISEEHLSKIKQRFYRVNKGRTRSDGGTGLGLAIAEKLVKLHQGELTVLSELNKGTTV 458

Query: 785 NCRIPS 790
              +P 
Sbjct: 459 RIVLPL 464


>gi|298377589|ref|ZP_06987541.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19]
 gi|298265608|gb|EFI07269.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19]
          Length = 795

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 140/343 (40%), Gaps = 27/343 (7%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-------- 519
                 ++   + + +A    +Y  E    +L   +  S D     LQ + E        
Sbjct: 172 GMPVPPIASNDYEKEVAEFHHKYVPEDQRDELTRNL--SLDHVLSILQNSREYVLFCQVM 229

Query: 520 ---LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFV 573
              +  D  L +S         +LT  ++ +    ER    L +  +  + A++ K+ F+
Sbjct: 230 ENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFL 289

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  IIG T +   S       +    ++ I  SS +LLNL+N++LD++ V
Sbjct: 290 SRMSHDIRTPMNAIIGMTTI--ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKV 347

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           ++G + L      + +LL  V   + T + +     +V     K    + D QR+ Q+  
Sbjct: 348 ESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLL 407

Query: 693 KILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +LSNA+ ++     + L+           G F  +V +NG  I  D    VF  F    
Sbjct: 408 NLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAE 467

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  +G GLG++I  +  ++  G + + S     +     
Sbjct: 468 DATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFT 510


>gi|253580374|ref|ZP_04857640.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848467|gb|EES76431.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 985

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 137/257 (53%), Gaps = 11/257 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           + T   +  +AL+E   A   A++ K++F+ ++S+++R+P+  IIGFT L  ++      
Sbjct: 449 DRTSDRKMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNIDDK-- 506

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +   Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+++L+++K  I+ ++H
Sbjct: 507 ERVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKTIISGQIH 566

Query: 664 ENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
              + + +   D        D+ RL Q+   +LSNA+ F+  G TV ++     G     
Sbjct: 567 AKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRLREYPGTQRGC 626

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSI 774
             +   VK+NG  + +   + +F+ F         + +G GLG++I ++ +++ GG + +
Sbjct: 627 ELYEIRVKDNGIGMSQKFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEV 686

Query: 775 SSSDEGVTTINCRIPSK 791
            +     T    R+P +
Sbjct: 687 QTEQGKGTEFIIRLPLR 703


>gi|218676127|ref|YP_002394946.1| putative sensor protein [Vibrio splendidus LGP32]
 gi|218324395|emb|CAV25783.1| putative sensor protein [Vibrio splendidus LGP32]
          Length = 537

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 127/251 (50%), Gaps = 10/251 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +  +    + L    E    A++ K++F+ ++S+E+R+PL  IIG  ++L  S+   L++
Sbjct: 21  MERNYHHNKELIIAKEDAISANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSQ---LSA 77

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + +E I +SS  LL L+NDILDL+ +++G + L+     L + + +    I +K   
Sbjct: 78  NQQEVLEDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAIS 137

Query: 665 NNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDF 719
            +I + +  D +  +    D  R+ Q+ + +LSNA+ F+SKG+     A        G  
Sbjct: 138 KDIELDINIDAQTPTQLFFDEYRVRQVLTNLLSNAIKFTSKGTITTDIAYTPMSLGRGKL 197

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
             SV ++G  I  +  +S+F  F        R   G GLGL+I    ++L GG+++  S 
Sbjct: 198 ECSVSDSGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSV 257

Query: 778 DEGVTTINCRI 788
             G +T    +
Sbjct: 258 KGGGSTFTFCL 268


>gi|95930432|ref|ZP_01313168.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133472|gb|EAT15135.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 679

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 188/422 (44%), Gaps = 50/422 (11%)

Query: 395 PNGQTLHVIVTSNPRGGTI---WMF-ENLTVQVDLETKYNTLVKVQGET----------I 440
           P  + + +I+ +   G  +   W+F  N  ++  ++ +   L +   E           +
Sbjct: 275 PISRRMWLILAALVIGALVVMVWVFAWNRLLKRQVQQRTAQLQRALFEAEISRDNVDAIL 334

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT------CSRYYNES 494
             +++G+ V   D R+ L N A   L  T  ++ S    I  + A+       SR + + 
Sbjct: 335 KSVADGLIVANRDNRVILMNRAAEQLLGTSLDQ-SYLQAIDTVLASPESSRYLSRVFEQG 393

Query: 495 DGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           D       ++    +++ +++Q             +++   +     T   V D  R ER
Sbjct: 394 DDCGAVEWVVEGVGEQQGRTIQA----------RTAVVQAQHGNRSRTITIVRDVTR-ER 442

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS--LNSKQSQYVE 611
            L          D +KN F+   ++ELR+PLT ++G+T+LL   +  +     +Q++ + 
Sbjct: 443 EL----------DRMKNEFISTAAHELRTPLTAVMGYTELLLHPEEFNVIEPKEQNRVLT 492

Query: 612 YISASSTILLNLVNDILDLATVDAG-IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            I   +  L  +V D+LDL+ V +G ++ L+ ++  +N LL         +    +  + 
Sbjct: 493 TIYEKACRLEGIVADLLDLSRVHSGCLIALSRASCDINSLLCRAVGGYQYR---QDFTVA 549

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +  D +     AD ++L Q+   +LSNA+ FSS+   V ++  RD+  ++  V+++G  +
Sbjct: 550 LELDSEEVVLWADEKKLEQVMDNLLSNAVKFSSESCQVFVRGHRDDDVYVIEVEDHGIGM 609

Query: 731 PEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                + VF++F           G+GLG+SIV++ +  H G + + S     T I  R+P
Sbjct: 610 TPKQVERVFDKFYRVDSSDTAPGGLGLGMSIVKNIVEAHSGTIEVQSVPGQGTCITVRLP 669

Query: 790 SK 791
            +
Sbjct: 670 IE 671


>gi|307151156|ref|YP_003886540.1| histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981384|gb|ADN13265.1| histidine kinase [Cyanothece sp. PCC 7822]
          Length = 707

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 4/239 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +K E+L++  E+K+ F+ ++S+E R+PL +I+  ++ L     G LNS+Q + V +I
Sbjct: 202 ELDQKAESLKRVSELKSRFLSNMSHEFRTPLNSILSLSNFLLKRMDGELNSEQEKQVTFI 261

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT-KMHENNIRIKVI 672
             ++  L  +VND+LDLA V+AG   +      + DL   ++       ++ +++ +   
Sbjct: 262 RNAAQQLSEMVNDLLDLAKVEAGKTDIYADKFEIGDLFGTLRGMFRPLLINNSSVSLIFE 321

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               + S  +D  ++ QI    +SNA+ ++ KG T+ + A        FSV + G  I  
Sbjct: 322 DPDHIPSVYSDEGKIAQILKNFISNALKYTEKG-TITVAAVPIGNHVTFSVADTGIGIAP 380

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  +S+F+ FV      Q+R  G GLGL I      L GG VS+ S     +T    +P
Sbjct: 381 ENLESIFDEFVQLKSPLQKRVKGTGLGLPISRKLAQLLGGDVSVISELGKGSTFFLNLP 439



 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D+ R+    S+I  NA  ++  G        +    F+  + ++G  I       +    
Sbjct: 36  DQTRIATAVSEICRNAFQYAGSGKVEFSLDGKQPQCFLIQICDSGKGIS--NLDRI---- 89

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +   +       G+GL      ++       I S  +  T +
Sbjct: 90  LDGDYNST---SGMGLMSSRRLMD----RFDIKSIPQQGTKV 124


>gi|325845381|ref|ZP_08168680.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|325488596|gb|EGC91006.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 444

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 150/371 (40%), Gaps = 29/371 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E +    +++     + + + + +    G ++ +N  F+                 ++
Sbjct: 100 QQEYRNRRNMQIISIITNSIEDPMVILNISGELEYANNRFKKWV--------------DL 145

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           +A  +  +NE    +L   +  +   E  + + TLE+     +  +  P+ N        
Sbjct: 146 SALKTVSFNEVKQPELRKVLEDALICE-TTRKKTLEIDQKFYIS-TANPIYNE------- 196

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              D       +      L+K   ++  F  +VS+EL++P++ I G T++L         
Sbjct: 197 --HDDFNGSVIIFHDITDLQKYQNLQKEFFGNVSHELKTPISAIKGCTEILLNGAKND-P 253

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +   +++  IS  +  +  LV D+L +   +   +K+      LN+LL +          
Sbjct: 254 AVLDEFLTMISDENNRMEQLVKDLLLINRYEFDQIKMKTEVFCLNELLTDCIVQPLNVAK 313

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             + +IK+ +  +      D  +L   F  +L+NA+ +S + +T+ +KA      +   V
Sbjct: 314 LKHQKIKLEAPEQ-YQIEGDYIQLKHCFLNLLTNAIHYSGENTTITVKAKAVGEYYQIQV 372

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP      +F RF        R   G GLGLSIV+S I  H G + ++S     
Sbjct: 373 IDQGIGIPSADLPHIFERFYRVDRARSRHTGGTGLGLSIVQSIIEAHKGRIMVNSELNVG 432

Query: 782 TTINCRIPSKE 792
           TT    +P K+
Sbjct: 433 TTFTVSLPKKK 443


>gi|162450130|ref|YP_001612497.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161160712|emb|CAN92017.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1850

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 153/381 (40%), Gaps = 17/381 (4%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +   E            T++  ++G+ V   +  +   N  F ++W+  +  LS G+  
Sbjct: 1464 ERRRAEEVLRHSYSRLEATLESTADGILVVDDEQHVVRQNRRFAAMWRIPDEILSTGSDD 1523

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM- 539
                    +  +         A+  S ++   S    +      V E    P      + 
Sbjct: 1524 TFRTFASDQVLDPEAFLQRIRALYASPEE---SSFDAIPFADGRVFERYSQPQRLGGRVV 1580

Query: 540  ---LTFVNVTDSVRAERAL-------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                +F +VT  VRAE+              A  +A  +++ F+   S+ELR+PLT++  
Sbjct: 1581 GRVWSFRDVTARVRAEQQRDQLLLDERRARTAAEEAVHLRDEFLSIASHELRTPLTSLQL 1640

Query: 590  FTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
                L       ++  +    V         L +LV+ +LD + + AG ++L  + + L 
Sbjct: 1641 AIQSLGQRLARGMDVERVRSAVALSGRQVKRLTDLVDMLLDASRIQAGRLELYTAPVELR 1700

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
             L++EV   +  ++ ++   + V ++  +     D  RL Q+ + +L+NA+ F  +   +
Sbjct: 1701 ALVDEVVAHLGDQIAQSGSAVAVRAEQPVIGRW-DPHRLEQVVTNLLTNAIKFGER-QPI 1758

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
             +   R +     SV + G  IP ++   +F RF          G+GLGL I  + +  H
Sbjct: 1759 DIAITRGDRIARLSVTDRGIGIPAEVQAQLFERFRRGVSSKNYGGLGLGLYITRTIVEAH 1818

Query: 769  GGHVSISSSDEGVTTINCRIP 789
            GG + +SS     +T    +P
Sbjct: 1819 GGRIRVSSEVGRGSTFCVELP 1839



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/501 (12%), Positives = 136/501 (27%), Gaps = 65/501 (12%)

Query: 2    MAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
                A I   +  ++ +     + +          +    +      +  A  + E    
Sbjct: 1135 FHCYAGIAFTQAADVVSPEERALFLARAEVSAEKLSRWADLCPENVAHRRALLLAELERA 1194

Query: 62   LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQ-LHQRIDIPQTDTDLL------- 113
              +      +Y      ++ + +   G     E +G  L          T +        
Sbjct: 1195 RGDARAAGDRY------DDAIALAQRGGYLHDEALGNELAGLCFRALGKTTIAGAYLTKA 1248

Query: 114  --SFENWLKFHHYIKLSKAT------EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAF 165
              ++  W       ++  A       E LR E       A       +K    +SG    
Sbjct: 1249 HRAYGRWGATEAMRRIEHAYPDLVPGESLRGERSPQAGAA-LDVGSVLKASQAISGEIVL 1307

Query: 166  LRILS--------LDGIYSELAETTLKCKKLSNHISVFKV----LFDSLDFLVWHRDQAG 213
             R+L           G    +       + +       +     +  +        D   
Sbjct: 1308 DRLLDALMRIMVENAGARRGVLLLLRDGRLVVEAEHHIRDASVHVLGAAPLEG-REDLPA 1366

Query: 214  DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
             ++      ++    + +      G          +  + +    +      +       
Sbjct: 1367 SVVTYVARTRETVLLDDLAIDGPFGRDPCCAGGAPRSSLAAPLVYKGRLAGVIYLENDLT 1426

Query: 274  NKSY-----KIVRVLNSFGEAGI-------------AIDVSKEITVNDQLTHTYEILHNL 315
              ++     +++R+L++     I             A     E  +    +     L + 
Sbjct: 1427 RSAFTPDRVEVIRLLSAQAANSIENARLYTDLQQENAERRRAEEVLRHSYSRLEATLEST 1486

Query: 316  TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
               I + D  +++   NR F  +W I    L+T  S+D    F       PE      + 
Sbjct: 1487 ADGILVVDDEQHVVRQNRRFAAMWRIPDEILSTG-SDDTFRTFASDQVLDPE-----AFL 1540

Query: 376  ENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQVDLETKYN 430
            + I ++Y S E    D     +G+           G    G +W F ++T +V  E + +
Sbjct: 1541 QRIRALYASPEESSFDAIPFADGRVFERYSQPQRLGGRVVGRVWSFRDVTARVRAEQQRD 1600

Query: 431  TLVKVQGETIDHLSEGVAVFG 451
             L+  +        E V +  
Sbjct: 1601 QLLLDERRARTAAEEAVHLRD 1621


>gi|126659206|ref|ZP_01730344.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619511|gb|EAZ90242.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 701

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                 + A+  K+ F+  +S+ELR+PL  IIG+ +LL    L    +KQ+  VE I  +
Sbjct: 318 WLYHQAQIANRAKDDFLAMLSHELRTPLNPIIGWCELLNRGNLSPEQTKQA--VEIIDRN 375

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           + +  +L+ D+LD++ +  G + L   ++ L  ++    +++     ++++ I+   D  
Sbjct: 376 AKLQSHLIEDLLDVSRILQGKLHLQKCSLDLKTIILSAIETVQLMAKKSSVTIETKLDTD 435

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           +     D  RL Q+   +LSNA+ FS   STV +  +  +G  +  +K+ G  I  +   
Sbjct: 436 VHPISGDITRLHQVVWNLLSNAIKFSPSHSTVTVSLSAVDGMALIEIKDQGKGIEPEFLP 495

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
            +F+RF  +         G+GLGL+IV + + +H G +   S       T     P
Sbjct: 496 YIFDRFSQSESSKNRDYGGLGLGLTIVRNLVEMHDGKIKADSLGINQGATFTVAFP 551


>gi|87308035|ref|ZP_01090177.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87289117|gb|EAQ81009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 661

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 181/455 (39%), Gaps = 27/455 (5%)

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
            T+P  +E+ E  R   +LP+ +        +    KS E   D W   +G       + 
Sbjct: 59  RTHPLREEMSELRRVRQRLPQAVV------IVVGDEKSGEVELDAWS--SGADEFAPTSH 110

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                          +     K     +     +   + G+  +         N  + + 
Sbjct: 111 LSAAAIERTVMRCVERRMTADKLRHRERWYRVAVAEGNVGLWRWDRP-----CNFFYLAD 165

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSV 525
              +   ++      ++A    R + +     L AA    S   +R  ++  +    D  
Sbjct: 166 HFQDMLSIAHDDLPSDLAQWIERIHPDDRHATLDAADAHFSGRSDRFVVEHRIRRGDDGY 225

Query: 526 LEY------SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
             Y      +       Q +    +++    AE AL     A   A  +K+ F+ ++S+E
Sbjct: 226 RWYLSSGCVAENDADRKQILGASTDISARKEAEFALQRAKRAAESAVRVKSEFLTNMSHE 285

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  I+G++++++     ++ S+  + V+ I  +   LL L+ DIL+ + +++G ++
Sbjct: 286 LRTPLAAILGYSEIMEDH---AVTSESLEAVDTIRRNGQHLLELIGDILEFSRIESGKLE 342

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
           ++       + L    +S      +  +R  V    ++    + D   + QI  ++++NA
Sbjct: 343 VSAMPTPAYEFLKSTFESFRELADDKGLRFVVDVSDQIPEMIITDPVCVRQILWRLVTNA 402

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           + F+  G  + +     +G+   +V++ G  IP +M  S++  F    +   RR  G GL
Sbjct: 403 VKFTDAGE-IGVAVRVADGNLELNVRDTGCGIPAEMLSSIYQPFRQADNSSTRRHDGAGL 461

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GL+I +    + GG +S+ S     +    R+P +
Sbjct: 462 GLAICQKLSQMLGGDISVRSQAGAGSQFTVRLPIE 496


>gi|157364230|ref|YP_001470997.1| histidine kinase [Thermotoga lettingae TMO]
 gi|157314834|gb|ABV33933.1| histidine kinase [Thermotoga lettingae TMO]
          Length = 488

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/388 (22%), Positives = 163/388 (42%), Gaps = 39/388 (10%)

Query: 413 IWMFENLTVQVDLETKYN---TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
             + ENL +   LE ++      ++   +  +   + V V   +     SN  +    K 
Sbjct: 132 ATVLENLELYQSLEKQHEVVEETMRYMQQIFNSFPQMVVVLDSNLNPVFSNLQYIHHQKD 191

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            +   +       +  T  R   E +  + F +II                     +EY 
Sbjct: 192 SDLVKTIEKVASTVLTTKMRQIIEVELNESFYSIIA------------------ENVEYE 233

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
             P    Q ++T  +VT++   E+        LR AD +K  F+  VS+ELR+PLT I  
Sbjct: 234 DQP----QVLITITDVTNTKELEK--------LRAADRLKTDFIATVSHELRTPLTAIKA 281

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           +T+ +            + +++ +   S  L +L++++LD A ++   M L  S   L +
Sbjct: 282 YTETILADPESMDKDTLTGFLQIVYKESLHLESLLDELLDFAKLEQKAMVLEKSKFDLTE 341

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-- 707
           L+ +V QS++       ++++ +   K    VAD++R+ Q+   ++SN + +S + ++  
Sbjct: 342 LIMQVIQSMSEFARSKKVKLQCVK-SKPIYIVADQKRIRQVLINLISNGIKYSKEEASEK 400

Query: 708 -VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
            V L A       I SV +NG  I +     +F +F         +  G GLGL+I +  
Sbjct: 401 YVKLSAETHQDSVIISVADNGIGIEKQHQNKIFEKFFRADSVFDYRTEGTGLGLAISKEI 460

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           + LHGG +   S     T    +IP  E
Sbjct: 461 VELHGGQIWFESKPHEGTVFYVKIPQGE 488


>gi|325920273|ref|ZP_08182220.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
            19865]
 gi|325549247|gb|EGD20154.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
            19865]
          Length = 1061

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
             K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL++KQ  Y E I  +
Sbjct: 778  HKQEIAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDNKQRSYTESIRRA 834

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R  +   G 
Sbjct: 835  GAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQERGLRFSLEV-GL 893

Query: 677  LGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPE 732
            LG      D  R+ QI   +LSNA+ F+ +G  V LK           F V + G  I  
Sbjct: 894  LGDITASGDVTRIRQILLNLLSNAIKFTERG-VVGLKLTTLGSYQGLRFEVADTGPGINA 952

Query: 733  DMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +F RF             G GLGL+I +      GGH+ + S     T     +P
Sbjct: 953  EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1012

Query: 790  SK 791
             +
Sbjct: 1013 LR 1014


>gi|189192132|ref|XP_001932405.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187974011|gb|EDU41510.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 389

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+ +VS+ELR+PL  +IG ++LLK S    LN +Q+ Y + I   +  LL+++ND
Sbjct: 35  RAKSLFLANVSHELRTPLNGVIGMSELLKAS---PLNGEQTGYADSIRVCADTLLSIIND 91

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685
           +LD + ++AG M +    I LN+ + EV +++A    E  ++     +       +AD  
Sbjct: 92  LLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELNPEMLVMADPV 151

Query: 686 RLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNR 741
           RL QI   +LSN+  F+ +GS TV     R+  D++    SV + G  IP++  + +F  
Sbjct: 152 RLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGIPDEQKQKLFLP 211

Query: 742 FVS--NAHRGQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTTINCRI 788
           F    ++      G GLGLSI ++ I  +  G V + S     TT+   +
Sbjct: 212 FSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTVTFSL 261


>gi|259909469|ref|YP_002649825.1| hybrid sensory histidine kinase BarA [Erwinia pyrifoliae Ep1/96]
 gi|224965091|emb|CAX56623.1| Signal transduction histidine-protein kinase [Erwinia pyrifoliae
           Ep1/96]
          Length = 909

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L       ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LNS Q  Y+  I
Sbjct: 278 ELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTMLNSTQRDYLHTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +  
Sbjct: 335 ERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARDNGDFIFSVKNNGS 728
              +  + + D  R+ QI   +L NA+ F+  G+  + ++    + +  +    + + G 
Sbjct: 395 QSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GISEKQQSKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|225870858|ref|YP_002746805.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
           subsp. equi 4047]
 gi|225700262|emb|CAW94499.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus equi subsp. equi 4047]
          Length = 441

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 159/374 (42%), Gaps = 32/374 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +  +  E +   L K       HL+ G+ +      + L++ +  + +   +        
Sbjct: 91  SDLLQKEARLKALSKNVEAVTSHLTMGMLLVSNQRELLLTSKSLPAYFPEAKPPFVVLED 150

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
           ++ +              DL A +   F D++++L+  L  L D   +LE +++P+ N  
Sbjct: 151 LKRM--------------DLIALVNQVF-DQKQTLKKELTGLHDGDLILEVTLVPIFNQS 195

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            ++  + V         L     A+R  + +   F+ + S+ELR+P+T+I GF + +K  
Sbjct: 196 HVVKEILV---------LLYDLTAIRHYERLNLEFIANASHELRTPVTSIKGFAETIKEM 246

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                + K+  +++ I   S  L  +V  +L L+   A    L+ +   L + L    QS
Sbjct: 247 PDDETSLKE-DFLDIIYNESLRLERIVEHLLTLSK--ANKTPLDLTEFQLRNFLLYTGQS 303

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +  ++ +  + +    +  +    +D+  L QI   +LSNA+ ++  G  + L + R  G
Sbjct: 304 MRPQLEQKQLELSYALEDSI-VVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQRVAG 362

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +V + G  I +     +F RF         Q  G GLGL+IV+    L GG ++++
Sbjct: 363 GVAITVADTGIGISQIELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQLLGGQITVT 422

Query: 776 SSDEGVTTINCRIP 789
           S     +     +P
Sbjct: 423 SQLGEGSQFTLFLP 436


>gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus]
          Length = 2370

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 13/248 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             AE       +   +A + K+ F+ +VS+ELR+PL  +IG ++LLK S    LN +QS Y
Sbjct: 1869 EAEANAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKAS---PLNGEQSGY 1925

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
             + I   +  LL+++ND+LD + ++AG M +    I LN+ + EV +++A    E  ++ 
Sbjct: 1926 ADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKT 1985

Query: 670  KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
                +       + D  RL QI   +LSN+  F+ +GS V ++A  D       D   SV
Sbjct: 1986 IEQLELDPEMLVMGDPVRLHQILMNLLSNSYKFTPRGS-VTVRAVVDQETSEWADVTCSV 2044

Query: 724  KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  IP++  + +F  F    ++      G GLGLSI ++ I  +  G V + S    
Sbjct: 2045 IDTGIGIPDEQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGK 2104

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 2105 GTTVTFSL 2112


>gi|15643616|ref|NP_228662.1| sensor histidine kinase [Thermotoga maritima MSB8]
 gi|4981387|gb|AAD35935.1|AE001752_2 sensor histidine kinase [Thermotoga maritima MSB8]
          Length = 489

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 159/382 (41%), Gaps = 41/382 (10%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + EN+ +  +LE  YN +       ++ L EG+ V+  +G IK  N  F+     +E   
Sbjct: 132 VLENIKLYRELEETYNYVN----VILNGLPEGIFVYS-NGEIKFQNEKFKEENFPDEVLR 186

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              +      +  ++   E    + F +I +                        +I   
Sbjct: 187 KAISLSEEAISLRTQRVGEVISGEEFFSITS----------------------IPLILGS 224

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             Q +    NVT+S   ER        L++ D +K  F+ ++S+ELR+PLT I  + + +
Sbjct: 225 EVQALTIVENVTESKELER--------LKRIDRMKTEFIANISHELRTPLTAIKAYAETI 276

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S      S   +++E I   S  L NL+N++LD + ++   +++N   + L DL+   
Sbjct: 277 YNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESA 336

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VIL 710
             +I      +N+ +   S+         D  R+ Q+   +L+N + +S K +    V +
Sbjct: 337 VNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKV 396

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
                +G  +  V++NG  IP+     +F +F            G GLGL+I +  + LH
Sbjct: 397 ILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELH 456

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + + S     +     IP 
Sbjct: 457 GGRIWVESEVGKGSRFFVWIPK 478


>gi|320354978|ref|YP_004196317.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123480|gb|ADW19026.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 942

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 14/248 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  R L    EA   A++ K+ F+ ++S+E+R+P+  IIG T L   ++       Q + 
Sbjct: 249 QRTRDLLAAKEAAEAANQAKSLFLANMSHEIRTPMNAIIGMTRLALDNR---PEPGQRKL 305

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  S+  LL ++NDILD + ++AG + L+    VL  L+  +  ++     E  + +
Sbjct: 306 LQTVKDSADSLLGILNDILDFSKIEAGQLLLSKKPFVLGQLMETMISALKVPAAEKGLTL 365

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIF 721
           +      L +  + D  RL QIF  ++ NA+ F+  G  V +     +            
Sbjct: 366 EYSISPDLPAVIIGDDLRLRQIFFNLVGNAIKFTETGG-VTVSIEPVSDGPPQQGCLLHC 424

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V+++G  IP++  + +FN F         +  G GLGL+I      + GG + + S   
Sbjct: 425 RVRDSGIGIPKEQQERIFNTFEQADGSSVRKYGGTGLGLTISRQLTEMMGGRMWVESEPG 484

Query: 780 GVTTINCR 787
             +T +  
Sbjct: 485 VGSTFHFT 492


>gi|253574564|ref|ZP_04851905.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846269|gb|EES74276.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 485

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 13/255 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A+  L ++ E L +A   K+ F+  +S+ELR+PL +II   +++  S     + + 
Sbjct: 218 ELQKAKIGLEDRAEQLAEASSHKSEFLATMSHELRTPLNSIINLAEMIAES--DEASEEI 275

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y   I  S   LL ++NDILDL+ V+AG +++    +VL ++   ++        +  
Sbjct: 276 SEYGRIIHKSGEELLQIINDILDLSKVEAGRLEITNEEVVLAEIPVWMQLQFEQIAAQKK 335

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------DNGD 718
           I      +  L  S ++D QR+ QI   +LSNA  F+ +G  V L   R       +   
Sbjct: 336 IAFTTRLEESLPDSIISDPQRIAQILRNLLSNAFKFTHEGH-VELDIRRAPAKGTAEGEW 394

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
            +F+V + G  + ED  ++VF  F         +  G GLGLSI  +   L GG++ + S
Sbjct: 395 LVFTVSDTGIGVAEDKQRAVFEAFQQADGSISRRYGGTGLGLSISSNLARLLGGYLRMES 454

Query: 777 SDEGVTTINCRIPSK 791
            +   +T +  +P K
Sbjct: 455 KEGQGSTFSFYLPLK 469


>gi|301384041|ref|ZP_07232459.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato Max13]
          Length = 1195

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 177/465 (38%), Gaps = 21/465 (4%)

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                 +   +  ELL  L   NK  E+      +        SS      W        
Sbjct: 468 WSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSSLPQPSLWGRIPPWVF 524

Query: 401 HVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            V+  +   G     +       +  ++  E + N  +  +   +D +   + V    GR
Sbjct: 525 WVVALALLTGLVSLAWSSRLKVQIRQRLKAECQLNDQLAFKHALLDGIPNPIYVRDLKGR 584

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---FDDERK 512
           +   N ++         +++    +        R   E    D  A +      F D   
Sbjct: 585 LISCNRSYEQSLGVSFEQMNGRRLLD--VEVIPRPLAEQMHADYLALLENHQPVFSDRTI 642

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            L G    +    + +          +  ++++T+    E+ L +      +A+E K+ F
Sbjct: 643 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 702

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  IIG  +L     L    +  +Q ++    S+T L+ L+ + LDLA 
Sbjct: 703 LASMSHEIRTPMGAIIGLLELECEQALRRGEAP-TQGLQVAHRSATELVALIGESLDLAR 761

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIF 691
           ++AG M+L+     L      V    + +  E  + +++  ++   G +  D  RL Q+ 
Sbjct: 762 IEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQVV 821

Query: 692 SKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +L NA+ F+ +G+ V+ ++ + D  D       + ++G  I     + +F  F   A 
Sbjct: 822 HNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAAD 881

Query: 748 RG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGLSI    + L  G +S+ S     T +   +P 
Sbjct: 882 DTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPL 926



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 16/171 (9%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +      +L++ ++    L D +   ++ RD  G ++  N SY++
Sbjct: 535 LVSLAWSSRLKVQIRQRLKAECQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQ 594

Query: 225 NTETEGIVFQKAIGES-------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
           +    G+ F++  G          +   E++    ++     +      +    G   + 
Sbjct: 595 SL---GVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTIELSGKRMNV 651

Query: 278 KIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
               V          G  G  ID+++   +  QL     +      A ++F
Sbjct: 652 WQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 702


>gi|209547395|ref|YP_002279313.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209538639|gb|ACI58573.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 2099

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 139/306 (45%), Gaps = 22/306 (7%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              +      +++ LQ T E L     +         + +       +  +A RAL EK  
Sbjct: 1363 QKLAAELQTQQRELQQTNEQLGQKAQQL------EERNVEVEAKNQEIEQARRALEEKAT 1416

Query: 561  ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             L    + K+ F+ ++S+ELR+PL +I+     L  +  G+L+ KQ ++ + I  + T L
Sbjct: 1417 ELALTSKYKSEFLANMSHELRTPLNSILILGQQLGENPDGNLSGKQVEFAKTIHGAGTDL 1476

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
            LNL++DILDL+ +++G + ++   I +++LL  + +    +    ++   V   G +  S
Sbjct: 1477 LNLISDILDLSKIESGTVSVDAEEIFVSNLLEVMARPFRHEAENRSLSFAVEIGGDVTKS 1536

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------------FIFSVKNN 726
             + D +RL QI   +LSNA  F+++G   +  A   +G                F V + 
Sbjct: 1537 IITDSKRLQQILKNLLSNAFKFTAQGGVTLRVALAASGWSPDHPSLRHAPSVIAFEVVDT 1596

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP +  + +F  F        R   G GLGL+I     NL GG + + S+    +T 
Sbjct: 1597 GIGIPPEKQRIIFEAFQQADASTSRKYGGTGLGLAISRELANLLGGEIQLRSTPGVGSTF 1656

Query: 785  NCRIPS 790
               +P 
Sbjct: 1657 VLYLPL 1662


>gi|297580749|ref|ZP_06942675.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
 gi|297535165|gb|EFH74000.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
          Length = 1177

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I 
Sbjct: 494 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 553

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 554 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVS 613

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP + 
Sbjct: 614 EQPVWVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQ 672

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 673 LEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPL 730


>gi|153812169|ref|ZP_01964837.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174]
 gi|149831824|gb|EDM86910.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174]
          Length = 942

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 124/248 (50%), Gaps = 12/248 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             + E  E  + A++ K +F+ H+S+++R+P+  IIGFT +   +   + + +    +E 
Sbjct: 551 EEMAELAEHAQAANKAKTAFLSHMSHDMRTPMNAIIGFTGIAMKN---NPSDEVKNCLEK 607

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  SS  LL+L+ND+LDL  +++G +  N     + ++ +         +   +I  K+ 
Sbjct: 608 IDESSEHLLSLINDVLDLTRIESGKVNYNPVPADVKNITDSALDITKGFLMNRDINFKIQ 667

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKN 725
             + K+ + +AD  RL  +   ILSNA+ F+  G T+  +A           +  + + +
Sbjct: 668 REEAKIPNVLADPARLRDVLVNILSNAVKFTPDGGTITFEARCQEKGGDGYINMRYRISD 727

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + E+  K VF  F       R Q  GVGLG++IV+ ++++ GG +S+ S     TT
Sbjct: 728 TGIGMSEEFTKEVFEEFAQEDSGVRTQYHGVGLGMAIVKKYVDMMGGTISVHSKKHEGTT 787

Query: 784 INCRIPSK 791
               IP +
Sbjct: 788 FTVDIPLE 795


>gi|21243758|ref|NP_643340.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
 gi|21109346|gb|AAM37876.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1191

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 11/251 (4%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +  + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQAVELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFS 722
            +      D  L      D  R+ QI   +L NA+ F+ +GS    V   +          
Sbjct: 906  LAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLSQHTRQGLRVE 965

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  +  +    +F RF          +  G GLGL+I        GG V+++S   
Sbjct: 966  VRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASELG 1025

Query: 780  GVTTINCRIPS 790
                    +P 
Sbjct: 1026 QGACFVVELPL 1036


>gi|117926235|ref|YP_866852.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609991|gb|ABK45446.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 764

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 122/288 (42%), Gaps = 18/288 (6%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN--VTDSVRAERALTEKNEALRKADE 567
           E + L  T+E  S      +   L NA+T+            R  R L    EA  +A+ 
Sbjct: 181 ELRRLHQTVESFS----RTAASHLENARTLQESEALLKQRVERRTRELRLAKEAAEQANL 236

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K  F+  +S+E+R+PL  ++G +DLL  S    LNS Q  +VE I  S   LL ++NDI
Sbjct: 237 AKTEFLATMSHEIRTPLNGVLGMSDLLLES---DLNSYQRHHVETIHRSGRTLLRVINDI 293

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LDL+ + AG M L  +   L   L +V+     +     +   +    +L    + D  R
Sbjct: 294 LDLSRIQAGRMPLEVTAFKLRACLEDVQALFKDQARRKGLSFSINCQEELPQRLLGDATR 353

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNR 741
           L QI   ++ NA+ F+ +G  V +    +            V+++G  I ++    +F  
Sbjct: 354 LNQILFNLVGNALKFTERG-FVRVSVQAEQVREADLLLRIQVEDSGIGISDEYKNRLFEI 412

Query: 742 FVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F         +  G GLGL I      + GG +  SS     +T    
Sbjct: 413 FSQQDSSISRRYGGSGLGLVITRKLAQIMGGKLGFSSRSGAGSTFWVT 460


>gi|298244484|ref|ZP_06968290.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551965|gb|EFH85830.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 482

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/506 (19%), Positives = 198/506 (39%), Gaps = 49/506 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             V ++L     I+      I +   +  + F N+S  +   +    +      +  L F
Sbjct: 8   QQVEEELRL---IVEKTPNLIWVATPDGSITFCNQSLADYTGLKCEQIMK----ENWLRF 60

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ--TLH---VIVTSNPRGG-- 411
           +       +      WKE +    ++   +++   L NG   T H   V V    + G  
Sbjct: 61  IHPG---EQHAAAAAWKEAV----QTDSVYEEEHRLGNGAGGTYHWFLVRVVPLKKVGGS 113

Query: 412 ---TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               + +  N+  Q  LE                   G+ +   +G I  +N AF S+  
Sbjct: 114 TVKWLGVCTNIDEQKRLEKSLRVSEACFSALFQSNILGLTIGDSNGLIHDANEAFLSMLG 173

Query: 469 TEENRLSPGT-HIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVL 526
              + L  GT  +  +    S   N+    +L    +++  + +  S  G L     +++
Sbjct: 174 YTRDELLNGTVRVEALTPPESHSLNKQIFRNLLETGVLSPIEKDHLSKDGNLVP---TLV 230

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
             +++    +Q +   +++T+    ER               K+ F+   S+EL+ PLT 
Sbjct: 231 GAALLEGEQSQHIAFLLDMTERKELERR--------------KDEFISIASHELKVPLTA 276

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +   +  L+    G+      Q +  +      L  L+ND+LD++ +  G       ++ 
Sbjct: 277 LTLLSSRLRKKLTGNDGFAAEQVLTRMEGQVRTLTRLINDLLDVSKIQMGKFDYADESLD 336

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  L++EV          + + +     G   SFV DR RL Q+ + +L+NA+ +S + +
Sbjct: 337 LASLIHEVVAECQHATTTHTLEVHGALSG---SFVGDRDRLSQVVTNLLTNAVKYSPQAN 393

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVES 763
            V +  +R +G     V++ G  IP++  + +F RF    +  + R   G+G+GL I + 
Sbjct: 394 RVDIHLSRSSGYARIHVQDYGVGIPKEQQQIIFERFNRGTYSRKERAFPGLGMGLYIAQE 453

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +  + G + + S +         +P
Sbjct: 454 IVKHYQGEILVESEEGKGAIFTLSLP 479



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 94/263 (35%), Gaps = 29/263 (11%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
              +++ +    L+W     G I + N S     +  G+  ++ + E+   F    ++  
Sbjct: 12  EELRLIVEKTPNLIWVATPDGSITFCNQS---LADYTGLKCEQIMKENWLRFIHPGEQHA 68

Query: 253 ISSSALEKNFCETVSTLEH-------GNNKSY--KIVRVLNSFGEA----GIAIDVSKEI 299
            +++  E    ++V   EH       G    +  ++V +    G      G+  ++ ++ 
Sbjct: 69  AAAAWKEAVQTDSVYEEEHRLGNGAGGTYHWFLVRVVPLKKVGGSTVKWLGVCTNIDEQK 128

Query: 300 TVNDQLTHTY----EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +   L  +      +  +  + + I D N  +   N +F+ +       L       E 
Sbjct: 129 RLEKSLRVSEACFSALFQSNILGLTIGDSNGLIHDANEAFLSMLGYTRDELLNGTVRVEA 188

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GT 412
           L     ++ L +Q+     +  + S  +     KD   +P      ++  +   G     
Sbjct: 189 LTP-PESHSLNKQIFRNLLETGVLSPIEKDHLSKDGNLVPT-----LVGAALLEGEQSQH 242

Query: 413 IWMFENLTVQVDLETKYNTLVKV 435
           I    ++T + +LE + +  + +
Sbjct: 243 IAFLLDMTERKELERRKDEFISI 265


>gi|153829131|ref|ZP_01981798.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
 gi|148875389|gb|EDL73524.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
          Length = 1177

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I 
Sbjct: 494 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 553

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 554 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVS 613

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP + 
Sbjct: 614 EQPVWVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQ 672

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 673 LEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPL 730


>gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.]
          Length = 1155

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 7/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +   E+ E L + D+ K  F Q++S+E R+P+T I G  +    S +G+           
Sbjct: 499 QKTREQAERLLQLDKQKTEFFQNISHEFRTPITLIQGPLE----SAVGTGEGLSYAQSAI 554

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              +S  LL LVN +LDL  +DAG M+ ++    L D ++++ +S      +  + +   
Sbjct: 555 ALCNSRRLLRLVNQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYCEKKALHLTTE 614

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +  +   D ++  ++   +LSNAM F+ +G T+ +K        I  V++ G  I +
Sbjct: 615 LD-ECPTVYIDMEKFDKVVYNLLSNAMKFTPEGGTISVKLQSQGHHCILQVQDTGIGIVK 673

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +    +F RF            G GLGL++V+  + LHGG V++ S     TT    +
Sbjct: 674 EQIPHLFERFRQAEGSENRSYEGSGLGLALVKELVELHGGRVTVDSVYGKGTTFTLWL 731


>gi|294498010|ref|YP_003561710.1| two-component sensor histidine kinase KinE [Bacillus megaterium QM
           B1551]
 gi|294347947|gb|ADE68276.1| two-component sensor histidine kinase KinE [Bacillus megaterium QM
           B1551]
          Length = 726

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/593 (16%), Positives = 228/593 (38%), Gaps = 45/593 (7%)

Query: 210 DQAGDILWANISYKKNTE-TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
           D+ G ++ AN S+ +    T   +  K + E  +       K++  +   E      +  
Sbjct: 167 DRTGQLIDANPSFCERLNYTRAQLLTKTLEELVEPTYHYKVKKLWRTLHQEGKTSGELPI 226

Query: 269 -LEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTYE----ILHNLTVAIAI 321
            LE+G+   ++     N + +  ++I  DV+++  +  QL  + +    I  N   AI I
Sbjct: 227 RLENGDVTFFEFTTTANIYSQYYMSIMRDVTEKRLMEQQLLRSEKNFRAIFENAIEAILI 286

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           +  +  +   N +    +E+ L  L        L  F+       +  ++   K      
Sbjct: 287 WRDDGEILNANLASSRTFELPLNKLIG----SNLYTFI-------DTKSFSALKVLQTFQ 335

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
            K    ++  +++PNG+   +  T       G  + +F N++ +  +E +     +   +
Sbjct: 336 TKGEIRNQLPFYMPNGEIKQLEFTGKKGIIEGDHLTIFRNISERTKIEQELRNNEEKFRQ 395

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             +   +G+ ++     I   N +   + +  +           I A   + +  S   D
Sbjct: 396 IFNGSIDGLVLWDGKRNIIDVNSSLCDILELSK---------EEICAHSMKDFISSANLD 446

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           +      + + ++   +G +  ++ +    +I        +            ER   ++
Sbjct: 447 VVIEHKETIE-QKGEAEGEITYVTGNEKVKNIEFSTKKDILPGLYMTLLRDVTERNQMQE 505

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                   ++       +++E+R+P+T + GF  LL++    S+    S Y + I +   
Sbjct: 506 QIRKSDTLQVVGQLAAGIAHEIRNPMTALKGFVQLLES----SIQEDHSLYFDIIKSELK 561

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  ++ + L LA   A    + +    L  ++ E    +  +    NI+ ++    +L 
Sbjct: 562 RIETIITEFLVLAKPQA----VKFEKKNLAAVVKETIDLLNAQALLENIQFELSVSPQLP 617

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKS 737
               +  ++ Q+   ++ NA++ +S G  +I++       ++  S+++ G  +PE+  K 
Sbjct: 618 MVYCEPNQIKQVLINVIKNAIEVTSNGGRIIVEVYSTEPHYVTVSIRDQGDGMPEERIKR 677

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +   F       + +G GLGL +    I  H G + + S     T  +  +P+
Sbjct: 678 LGEPFY----TTKEKGTGLGLMVSYKIIEEHKGRIEVESKIGEGTAFHVILPA 726



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 93/265 (35%), Gaps = 21/265 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
                   +L     I +++  AI +FD+   +   N S   L+E     L T+    ++
Sbjct: 18  EAAQKQQGELQQLRAIFNDVLDAIVVFDEYFQVINANESACGLFEKTKDELLTH----QM 73

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGG 411
            +FL        +  +    E  +  Y+ +        L +G   HV  TS+      G 
Sbjct: 74  KDFLMYFPYDMIEAYYPALLEESYFKYEGA------MTLRSGMMKHVEFTSHKHSHMSGI 127

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +  F ++T    +E +      +  +  +   +G+ +F   G++  +NP+F        
Sbjct: 128 IVCTFRDITQHKMMENERFISHHMFMDVFNEAVDGIVIFDRTGQLIDANPSFCERLNYTR 187

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
            +L     +  +      Y  +     L     TS +     L   LE    +  E++  
Sbjct: 188 AQLLT-KTLEELVEPTYHYKVKKLWRTLHQEGKTSGE-----LPIRLENGDVTFFEFTTT 241

Query: 532 P-LPNAQTMLTFVNVTDSVRAERAL 555
             + +   M    +VT+    E+ L
Sbjct: 242 ANIYSQYYMSIMRDVTEKRLMEQQL 266



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 107/289 (37%), Gaps = 30/289 (10%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           I  ++ E  L  ++L      F+ +F++    +      G+IL AN++  +  E   +  
Sbjct: 252 IMRDVTEKRLMEQQLLRSEKNFRAIFENAIEAILIWRDDGEILNANLASSRTFE---LPL 308

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL----EHGNNKSYKIV--RVLNSFG 287
            K IG +   F +      +      +   E  + L     +G  K  +    + +    
Sbjct: 309 NKLIGSNLYTFIDTKSFSALKVLQTFQTKGEIRNQLPFYMPNGEIKQLEFTGKKGIIEGD 368

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDL 343
              I  ++S+   +  +L +  E    +       + ++D  R +   N S  ++ E+  
Sbjct: 369 HLTIFRNISERTKIEQELRNNEEKFRQIFNGSIDGLVLWDGKRNIIDVNSSLCDILELSK 428

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
             +  +     + +F+ SAN            E+  ++ +  E   +  ++   + +  I
Sbjct: 429 EEICAH----SMKDFISSANLD-------VVIEHKETIEQKGEAEGEITYVTGNEKVKNI 477

Query: 404 VTSNPR----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             S  +    G  + +  ++T +  ++ +      +Q   +  L+ G+A
Sbjct: 478 EFSTKKDILPGLYMTLLRDVTERNQMQEQIRKSDTLQ--VVGQLAAGIA 524


>gi|170078960|ref|YP_001735598.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169886629|gb|ACB00343.1| two-component hybrid sensor and regulator (His Kinase A domain
           protein) [Synechococcus sp. PCC 7002]
          Length = 372

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 162/370 (43%), Gaps = 21/370 (5%)

Query: 431 TLVKVQGETI--DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN--IAAT 486
            L++  G+ +    L+ G  V+  D    L   A   +    +  L          + AT
Sbjct: 6   ALIQALGDIVYERCLTSGAMVWYGDFTRVLGYSAA-EMGNDCQTWLERLYPDDQTKVLAT 64

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             + + +   ++L        D   +   G+   + D  +   I    + Q  +  V   
Sbjct: 65  LEQAFAQQQAYEL--------DYRFQHHDGSYVWIQDRGVPKDITAQDSDQFWVIGVMRD 116

Query: 547 DSVRAERALTEKNEALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
            S R +  L   N  +R+   +++K  F+   S+E R+PLT+I+GFT+LL+         
Sbjct: 117 ISDRKQVELDMHNALMREKELNQLKTRFIDIASHEFRTPLTSILGFTELLEQYAHKFNPE 176

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-H 663
            Q ++++ I  ++  L  LV+D+L ++ VDAG + L  + +    L  ++ + +     H
Sbjct: 177 AQRRHLQRIKGAAQRLQTLVDDVLSVSRVDAGQLTLEPAPVHFEGLCQDIIEELQVVFGH 236

Query: 664 ENNIRIKVIS----DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            + IR   +     D +L   + D + +  I S +LSNA+ +S  G  V L     +   
Sbjct: 237 THPIRFDFVPQYQGDRRLLPVL-DAKIIRHILSNLLSNALKYSFPGEAVSLVVCCGDRQI 295

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             ++ + G  IP+     +F  F    + G+  G GLGL IV+ +I+LH G + ++S   
Sbjct: 296 SITITDRGIGIPQADLPHLFEPFHRAQNVGKIPGTGLGLHIVKRYIDLHNGTIMVASLVN 355

Query: 780 GVTTINCRIP 789
             TT   +IP
Sbjct: 356 SGTTFRVKIP 365


>gi|23012559|ref|ZP_00052614.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 511

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 115/240 (47%), Gaps = 7/240 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +     R A+  K+ F+  +S+E+R+P+ +I+G   LL    L + +    + +  
Sbjct: 15  RDLEKAVTQARDAERAKSEFLAVMSHEIRTPMNSILGMVHLLMDRPLAAED---REKLSV 71

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL ++NDILD + ++A  ++   +   L + +  V   +  +  E N+ + + 
Sbjct: 72  VHDSGAALLGIINDILDFSRLEADGVQFEDAPFHLGNTVEGVVSLLRGRATEKNLTLALD 131

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFIFSVKNNGSSI 730
           +   L  +V  D  RL Q+   ++ NA+ F+++G  V  L+   +   + FSV + G  +
Sbjct: 132 APSPLPGWVSGDGARLRQVLINLVGNAIKFTTQGGVVLRLRRDGEGNRYEFSVIDTGIGL 191

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +  K++F  F        RR  G GLGL+I +  ++  GG + + S+    +     +
Sbjct: 192 EAEQAKNLFQPFHQADASISRRFGGSGLGLAICKKLVDAQGGKIGVDSTKGLGSRFWFHL 251


>gi|312888745|ref|ZP_07748309.1| response regulator receiver sensor hybrid histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298745|gb|EFQ75850.1| response regulator receiver sensor hybrid histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 539

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/266 (31%), Positives = 138/266 (51%), Gaps = 11/266 (4%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+I L N Q  +   N+ +  ++ + L+E  E  +K  E K  F+ ++S+E+R+PLT+II
Sbjct: 125 SLINLVNYQRQIKRQNI-ELEKSRQELSEAVEQTQKIREAKEIFLANMSHEIRTPLTSII 183

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G   LLK S    LN+ Q + ++ +  SS  LL LVNDIL+ A +DAG + +N +   + 
Sbjct: 184 GLNHLLKQS---PLNADQQELIKLMEYSSQSLLTLVNDILESAKIDAGKITINRAETNII 240

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +L+  +    +    E  + +    D  L  + +AD  RL QI   I++NA+ F+++G  
Sbjct: 241 NLVQTICNLSSPIAKEKGLALSCHFDTDLPSAILADSLRLNQILLNIINNAIKFTTEGGV 300

Query: 708 -VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIV 761
            V LKA +   +     F + + G  I +     +FNRF     +   +  G GLGLSIV
Sbjct: 301 EVTLKAIQKEPNRVLLQFIITDTGIGISQSGISKLFNRFEQAEVKTWEKFGGTGLGLSIV 360

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
           +    L GG +++ S+    TT    
Sbjct: 361 KRISELKGGELTVLSTPGQGTTFTFT 386


>gi|74318689|ref|YP_316429.1| periplasmic sensor hybrid histidine kinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058184|gb|AAZ98624.1| Periplasmic Sensor Hybrid Histidine Kinase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 841

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 9/243 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    E  RKA   K+SF+ ++S+ELR+PL  +IG  DLL  +K   LN +Q ++ + 
Sbjct: 181 KQLHSAVERERKASLAKSSFLANMSHELRTPLNGVIGVADLLAETK---LNKEQKEFAQI 237

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL L++++LD++ ++AG +  +     L+ ++N     + T+ +   + +   
Sbjct: 238 IRTSADTLLELIDNVLDISRIEAGRILTSSEDFDLHRVINGTVAMMETQANAKGLVLAAH 297

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG--DFIFSVKNNGS 728
              +       D   L Q+   ++ NA+ F+  G   V ++             V + G 
Sbjct: 298 IAPQTPFQLQGDAPHLRQVLINLIGNAVKFTEHGRVDVYVRPVGQGNPQRLRLEVVDTGI 357

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D    +F+ F        RR  G GLG +I +  +   GG + + S +   TT   
Sbjct: 358 GIPPDAQIRIFDSFTQADASITRRFGGTGLGTTIAKQLVEAMGGEIGLHSREGEGTTFWF 417

Query: 787 RIP 789
            +P
Sbjct: 418 ELP 420


>gi|84387561|ref|ZP_00990579.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
 gi|84377609|gb|EAP94474.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
          Length = 863

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 125/251 (49%), Gaps = 10/251 (3%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +  + +  + L E  E    A++ K++F+ ++S+E+R+PL  IIG  ++L  S+   L++
Sbjct: 347 MERNYQHNKELVEAKEDAISANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSQ---LSA 403

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            Q + +  I +SS  LL L+NDILDL+ +++G + L+     L + + +    I +K   
Sbjct: 404 NQQEVLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAIS 463

Query: 665 NNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDF 719
            +I + +  D +       D  R+ Q+ + +LSNA+ F+SKG+     A        G  
Sbjct: 464 KDIELDINIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFTSKGTITTDIAYTPMSLGRGKL 523

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
             SV + G  I  +  +S+F  F        R   G GLGL+I    ++L GG+++  S 
Sbjct: 524 ECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSV 583

Query: 778 DEGVTTINCRI 788
               +T    +
Sbjct: 584 KGEGSTFTFCL 594


>gi|297737593|emb|CBI26794.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 145/359 (40%), Gaps = 44/359 (12%)

Query: 449 VFGPDGRIKLSNPAFRSLWK--TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V      + +    ++ +      E++L  G   R     C  +  E   W    ++ T+
Sbjct: 201 VTNSSDPLVMYGRQYQDVDMSLLHESKLDFGDPFRKHQMICRYHQKEPTSW---TSLTTA 257

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           F      L   + LL   +L  + I +   +         D     + L  + EA    D
Sbjct: 258 F------LFFVIGLLVGYILYGAAIHIVKVE---------DDFHEMQELKVRAEAA---D 299

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+  VS+E+R+P+  I+G   LL  +    L+S Q  Y +   A    L+ L+N+
Sbjct: 300 VAKSQFLATVSHEIRTPMNGILGMLALLLDT---DLSSTQRDYAQTAQACGKALITLINE 356

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQ 685
           +LD A ++AG ++L      L  +L++V    + K     + + V +SD      + D  
Sbjct: 357 VLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPEMVIGDPG 416

Query: 686 RLLQIFSKILSNAMDFSSKGST-VILKAAR--------------DNGDFIFSVKNNGSSI 730
           R  QI + ++ N++ F+ +G   V +  A               +    + SV++ G  I
Sbjct: 417 RFRQIITNLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETSSEKVTLMVSVEDTGIGI 476

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           P      VF  F+       R   G G+GLSI +  + L GG +   S  +  +T +  
Sbjct: 477 PLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFT 535


>gi|125973031|ref|YP_001036941.1| histidine kinase [Clostridium thermocellum ATCC 27405]
 gi|125713256|gb|ABN51748.1| histidine kinase [Clostridium thermocellum ATCC 27405]
          Length = 440

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 117/234 (50%), Gaps = 2/234 (0%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + + +      K+ F+  +++E ++PL  I      ++      L  +  +Y+  I  ++
Sbjct: 161 QKKYIENLARFKDEFLYGITHEFKTPLVVISSALQAIEALCRDELTDRVKKYLNRIKQNT 220

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
              + LVN++LD+A ++AG +K+    + +  L   + +S++       +++   S+   
Sbjct: 221 FRQIRLVNNLLDIARIEAGHIKIFKRNLDIVALTRLITESVSMFADLKGVQLLFYSNIDK 280

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D ++  +I   +LSNA+ F+ K  +V ++ +   G     VK++G  IP+D  K+
Sbjct: 281 KIIAIDEEKYERIMLNLLSNAIKFTPKDRSVYVEVSAKEGCVEIKVKDSGIGIPKDKIKT 340

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F RF  V ++      G G+GLS+V  F+N  GG +S++S +   +T    +P
Sbjct: 341 IFERFGQVDSSLSRNAEGTGIGLSLVRMFVNAMGGEISVTSEENIGSTFTVTLP 394


>gi|27366581|ref|NP_762108.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6]
 gi|27358147|gb|AAO07098.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6]
          Length = 970

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 117/233 (50%), Gaps = 7/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A+  K++F+  +S+E+R+P+  ++G   LL  S L  L   Q +Y + I+ S   LL
Sbjct: 464 AEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL---QKRYADIINRSGKNLL 520

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ND+LD + ++AG +++  S   L+ ++ +  Q + ++  E ++      +  +  + 
Sbjct: 521 AILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSYHIESDVNHYW 580

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
             D  R+ Q+ + ++ NA+ F+ +G+  + +    +  + + F V + G  I +    ++
Sbjct: 581 RGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGIGIAQQEQATL 640

Query: 739 FNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+ F   +  +    G GLGL+I    I   GG + ++S +   +     +P 
Sbjct: 641 FDAFTQASGGQKAAGGTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWFTVPL 693


>gi|261416187|ref|YP_003249870.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372643|gb|ACX75388.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326964|gb|ADL26165.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1211

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 159/353 (45%), Gaps = 25/353 (7%)

Query: 454 GRIKLSN----------PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
           G IK SN          P FR  W+   N     +++ ++      Y      W      
Sbjct: 582 GFIKYSNAILEFSKEVLPEFRETWENMANVDFMRSYLADVDKREYSYRALKGEW----RR 637

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +T+F  ER++      +++   ++ +I                +  + ++ L +      
Sbjct: 638 VTTFVLERRNGVPVTFIMAFMFID-NITAQKMELDAKIAEQKQELEKQQKLLEQALVQAE 696

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           KA+  K  F+ ++S+++R+P+  IIGFT+L   +    +  K   Y+     SST LL+L
Sbjct: 697 KANNAKTMFLSNMSHDIRTPMNAIIGFTNLALNNLDDPVLVK--NYLNKTVVSSTHLLSL 754

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVA 682
           +NDILD++ +++G ++L      L+++++++   +  +  E    + + + + +    + 
Sbjct: 755 INDILDMSRIESGKIRLEEVNCNLSEIMHDLNTIVLGQASEKQQNLYMDTFNIENELVIC 814

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKS 737
           D+ RL Q+   +LSNA+ F+  G  + +         + G + F VK++G  +  +  K 
Sbjct: 815 DKLRLHQMLINLLSNAVKFTPVGGNIHVFVRQTASDENTGTYEFHVKDDGIGMSPEFLKV 874

Query: 738 VFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++  F         + +G GLG+SI +  +++ GG + + S+    T     +
Sbjct: 875 LYQPFERERTSTISKTQGTGLGMSITKKIVDMMGGSIDVVSAPNQGTEFIVHL 927


>gi|153801748|ref|ZP_01956334.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|153825707|ref|ZP_01978374.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|254291241|ref|ZP_04962036.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
 gi|124122713|gb|EAY41456.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|149740644|gb|EDM54753.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|150422805|gb|EDN14757.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
          Length = 1177

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I 
Sbjct: 494 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 553

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 554 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVS 613

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP + 
Sbjct: 614 EQPVWVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQ 672

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 673 LEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPL 730


>gi|94502158|ref|ZP_01308657.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Oceanobacter sp. RED65]
 gi|94425705|gb|EAT10714.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Oceanobacter sp. RED65]
          Length = 629

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 140/297 (47%), Gaps = 13/297 (4%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           LFA +  + D   +S++ +++ L+    +  I     ++      +     +A   L + 
Sbjct: 192 LFAVLYFTLDRPIRSIKRSIKHLARKQYDVDIQDSIWSEFADLAYHGN---KARDLLKQA 248

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           +   ++  + K+ FV  VS+ELR+PL  I+G T+LL      + NSK+S+ ++ I  S+ 
Sbjct: 249 DAYEKQQQKYKDQFVASVSHELRTPLNGILGLTNLL---VKQNPNSKKSKTIQKIHLSAQ 305

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL++VN+ILD + + +G   +    + +    N V   +    H  +I   +  D  + 
Sbjct: 306 MLLDVVNEILDYSKIQSGKFNIELIPVDIQTDFNHVFSVLTHLAHNKDIDFHIFIDPNIR 365

Query: 679 S-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD---FIFSVKNNGSSIPED 733
           +  ++D  RL Q+ + + SNA+ F+++G  V  +    ++ D     F   + G  I +D
Sbjct: 366 TRVLSDPLRLQQVINNLCSNAIKFTNQGKVVASIDIEDESVDSLTLHFKFMDTGIGISDD 425

Query: 734 MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F  +      Q  G GLGL I +  +   GGH+ + S   G +T    +
Sbjct: 426 ALPHLFEAFKQSDDSVTRQYGGTGLGLFISQQIVKALGGHIEVESRLGGGSTFEFTL 482


>gi|15640642|ref|NP_230271.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587963|ref|ZP_01677717.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|121728271|ref|ZP_01681303.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|147675649|ref|YP_001216115.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|153818929|ref|ZP_01971596.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|153822991|ref|ZP_01975658.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|227080803|ref|YP_002809354.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|254850855|ref|ZP_05240205.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|298500739|ref|ZP_07010542.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
 gi|9655056|gb|AAF93788.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121547810|gb|EAX57898.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|121629465|gb|EAX61892.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|126510546|gb|EAZ73140.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|126519498|gb|EAZ76721.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|146317532|gb|ABQ22071.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|227008691|gb|ACP04903.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|227012447|gb|ACP08657.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|254846560|gb|EET24974.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|297540520|gb|EFH76578.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
          Length = 1177

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I 
Sbjct: 494 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 553

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 554 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVS 613

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP + 
Sbjct: 614 EQPVWVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQ 672

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 673 LEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPL 730


>gi|294627283|ref|ZP_06705869.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598365|gb|EFF42516.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 1191

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 11/251 (4%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFS 722
            +      D  L      D  R+ QI   +L NA+ F+ +GS    V              
Sbjct: 906  LAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLPQHTRQGLRVE 965

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  +  +    +F RF          +  G GLGL+I        GG V+++S   
Sbjct: 966  VRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASELG 1025

Query: 780  GVTTINCRIPS 790
                    +P 
Sbjct: 1026 QGACFVVELPL 1036


>gi|229101999|ref|ZP_04232712.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28]
 gi|228681386|gb|EEL35550.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28]
          Length = 466

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 130/291 (44%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      +     +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWIGRKIIIAITKPLSQMERVANHFATGDFSERITISSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 HSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  +RI    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYELKFIEKKLRISTNLNPEII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +I+   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQNGNIIITLEQIDDYCELKIKDTGIGIDAEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++H G   I S     TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWKIESEKGKGTTVFIKL 457


>gi|44004552|ref|NP_982221.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|190015080|ref|YP_001966749.1| sensor histidine kinase [Bacillus cereus]
 gi|190015346|ref|YP_001967073.1| sensor histidine kinase [Bacillus cereus]
 gi|218848250|ref|YP_002455135.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|229164673|ref|ZP_04292537.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296506625|ref|YP_003667859.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
 gi|42741618|gb|AAS45063.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|116584756|gb|ABK00871.1| sensor histidine kinase [Bacillus cereus]
 gi|116585027|gb|ABK01136.1| sensor histidine kinase [Bacillus cereus]
 gi|218540301|gb|ACK92697.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|228618753|gb|EEK75715.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296327212|gb|ADH10139.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
          Length = 455

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      ++ +  + L    + +  F+  V++ELR+PLT I G+ D++  +K+ + +  Q
Sbjct: 213 EVGELAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQD--Q 270

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I   +  +  LV D+ +LA ++     +N     L DLL  +   I     E N
Sbjct: 271 KHYLSIIKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKN 330

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I I       L   + D QR  Q+   +L+NA   S   S + +            VK+ 
Sbjct: 331 IHIIFSCPEDLVLLL-DEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDE 389

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE     +F RF        R   G GLGL+IV+  I LH G +S+ S     T  
Sbjct: 390 GEGIPEKDLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIF 449

Query: 785 NCRI 788
              +
Sbjct: 450 TILL 453


>gi|322708265|gb|EFY99842.1| putative histidine kinase HHK1p [Metarhizium anisopliae ARSEF 23]
          Length = 2550

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 18/231 (7%)

Query: 572  FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            F+ +VS+ELR+PL  +IG ++LL+ S    LN +Q +  + I  S+ +LL ++NDILD +
Sbjct: 1969 FLANVSHELRTPLNGVIGNSELLRDS---DLNREQLEMADSIRVSADLLLTVINDILDFS 2025

Query: 632  TVDAGIMKLNYSTIVLNDLLNEVKQSI----ATKMHENNIRIKVISDGKLGSFVADRQRL 687
             ++A  MKL        +++ EV +++      K  + N++I    +        D  RL
Sbjct: 2026 KMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLPPMLIYGDPIRL 2085

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
             Q+   ++ N++ F+  GS V + A      +D+    F V++ G  IP      +F  F
Sbjct: 2086 HQVLGNLIGNSLKFTEDGS-VTIGARLDAETKDSATLTFWVRDTGIGIPAQQLAKLFQPF 2144

Query: 743  VSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTT--INCRI 788
                     +  G GLGLSI +S I  +  G + + S +   TT       
Sbjct: 2145 SQADASTARKYGGSGLGLSICKSLIEIMMKGKIQLESEESEGTTAWFTVTF 2195


>gi|312884756|ref|ZP_07744457.1| sensor histidine kinase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367669|gb|EFP95220.1| sensor histidine kinase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 1152

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 165/417 (39%), Gaps = 32/417 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++ S  +G  + + + +T+  +    Y+    +    I+H+ +G++V     R+   N 
Sbjct: 597  LVLNSALQGRNMQLEDVVTIVDEASELYDFSRGLLQGAIEHIGQGISVIDKQLRLVAWNK 656

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLEL 520
             +  L+      +  G  I +I    +       G  +       +F  +  +   +   
Sbjct: 657  RYLELFSFPRGLVQVGRPIEDIIRYNAEQGLCGPGDIEEQVQRRLAFLKQGSAHTSSRLR 716

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
                V+E    P+PN   +++F ++T    AE+AL + NE L +                
Sbjct: 717  ADGRVIEVQGNPMPNGGFVMSFSDITVFREAEQALKQANENLEERVIKRTEQLQHLNQQL 776

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                         K+ F+  VS++L  PL     F   L      + + +  Q    I +
Sbjct: 777  VTATKQSEHESRSKSRFLAAVSHDLMQPLNAARLFASTLNE---VTADRECRQLARNIES 833

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S     +L+ D+LD++ +++G ++ N     +ND+L  +         + NI  + I   
Sbjct: 834  SLEAAEDLIGDLLDISRLESGKLEANVHGFAINDVLTNLSAEFDALSKQQNIEFQTILSQ 893

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  +D + L ++    L+NA  +S +G  V+L   R        V +NG  I  D  
Sbjct: 894  --LWVRSDPKLLRRVIQNFLTNAFRYSPEG-KVVLGVRRAGPHIKIEVWDNGMGIEPDKQ 950

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + +F  F         +G+GLGL+I +   ++ G  +++ S     +  +  IP  E
Sbjct: 951  QEIFQEFKRGTQLRAEQGLGLGLAISKGISHVLGHQITMRSWLGKGSVFSIEIPRCE 1007



 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 13/222 (5%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   I++ D+   L   N+ ++EL+      +      +
Sbjct: 617 VDEASELYDFSRGLLQGAIEHIGQGISVIDKQLRLVAWNKRYLELFSFPRGLVQVGRPIE 676

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++ +           + +   +   +  K    H  +    +G+ + V     P GG +
Sbjct: 677 DIIRYNAEQGLCG-PGDIEEQVQRRLAFLKQGSAHTSSRLRADGRVIEVQGNPMPNGGFV 735

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             F ++TV  + E       +   E          V     +++  N    +  K  E+ 
Sbjct: 736 MSFSDITVFREAEQALKQANENLEER---------VIKRTEQLQHLNQQLVTATKQSEHE 786

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
               +    +AA         +   LFA+ +     +R+  Q
Sbjct: 787 SRSKSRF--LAAVSHDLMQPLNAARLFASTLNEVTADRECRQ 826


>gi|237749008|ref|ZP_04579488.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
 gi|229380370|gb|EEO30461.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
          Length = 825

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/507 (17%), Positives = 196/507 (38%), Gaps = 57/507 (11%)

Query: 321 IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFS 380
           + D+N  L + N  +  L                  +   + +    Q  W    E + S
Sbjct: 58  LLDENYTLVWANDYYYRLIGWPKEEYEAR--FHNRPDLYYANH----QKQWNELVETVTS 111

Query: 381 VYKSSETHKD---TWHLPNGQTLHVIVTS-------NPRGGTIWMFENLTVQVDLETKYN 430
             K+     +   T    +G  + V +++       N    +  +  N+  Q+ ++ +  
Sbjct: 112 TIKADRNGYNLVTTMPRKDGSHIWVNISNVFSDEYVNGYQVSYTVITNIDDQIRMQKE-- 169

Query: 431 TLVKVQGETIDHLSEGVAVF--GPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                Q  T D+L   VA F    +G R   +N  FR  + + E        + N+    
Sbjct: 170 -----QSVTYDNLPGFVARFQVNEEGFRFLGANERFRDFFDSSEQE-GLAFGLSNVNTEK 223

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----- 542
           +R     +   +       F     +LQ T +   +   + +   +        +     
Sbjct: 224 NRRVYLQNFSRMRRGERVHF-----TLQATDKTGGNLWFQVNANCIDWINDNPVYLVIYI 278

Query: 543 --VNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              ++T+    +R L E++  L        +A+  K+ F+  +S+++R+P+  IIG T +
Sbjct: 279 DITDITEQRELQRQLEERSVMLHDALQTAERANRSKSEFLSRMSHDIRTPMNAIIGMTAI 338

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                      +    +  I+ SS +LL L+N++LD++ +++G + +      LND+L  
Sbjct: 339 --AGTHIDDRDRVKDCLGKITLSSKLLLGLINEVLDMSRIESGNLAITEEEFCLNDMLQN 396

Query: 654 VKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   +   +        + +   +  + + D Q + Q+F  ILSNA+ ++  G  ++   
Sbjct: 397 LVTILQPSVMAKQHTFDIRAHHLRHENVIGDPQHIQQVFLNILSNAIKYTPAGGKIMFDI 456

Query: 713 ARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESF 764
                +      + F+ ++NG  +  +  + +F+ F           +G GLG++I  + 
Sbjct: 457 REKPSNTAGYGLYEFTFEDNGYGMKPEFIEKLFSPFERADDADVLAVQGTGLGMAISRNI 516

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + L  G + + S+    +T    +P K
Sbjct: 517 VKLINGDIKVKSTYRKGSTFTVELPLK 543


>gi|298529762|ref|ZP_07017165.1| GAF sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511198|gb|EFI35101.1| GAF sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 622

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 128/285 (44%), Gaps = 15/285 (5%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R S + T E+ +D V  ++      A  M++  +       E+ L        +A   K+
Sbjct: 189 RDSNRYTREVATDFVEHFAET---FAWAMVSLRDHEKLRIQEQNLAAAKNEAEEATSAKS 245

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+E+R+P+  ++G + LL  +    LN++Q      I +S   LL+++N+ILD 
Sbjct: 246 MFLATMSHEIRTPMNGVMGLSQLLLET---PLNTEQRHLAGLIRSSGENLLDIINNILDF 302

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQ 689
           + ++A  + L      L  +++E+   +     E +I      D  L +    D  RL Q
Sbjct: 303 SKIEADRLVLEQVDFDLRTMMDEITHIMKINAGEKDIDFVSRIDPALETSLQGDPGRLRQ 362

Query: 690 IFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           I   +  NA+ F+++G  V L+ +       +   +F + + G  I ++    +F  +  
Sbjct: 363 ILFNLSGNAVKFTAQGG-VRLEVSPLTKLEKSIQILFEITDTGPGIDQETKNRLFTAYQQ 421

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                 R   G GLGLSI +S + L  G + + SS    +T   +
Sbjct: 422 AESSTSREYGGSGLGLSISKSLVELMHGEIGLESSPGTGSTFWFK 466


>gi|163813929|ref|ZP_02205323.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759]
 gi|158450799|gb|EDP27794.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759]
          Length = 779

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 132/299 (44%), Gaps = 16/299 (5%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           +  ++    +ER      L+ L   +    I  +   Q  +    + +  +    LT   
Sbjct: 156 YPELVIPLANERSVYVDMLQSLI--IFGIVIGSIVRFQNDVYKCKLEEIEQINEELTRAK 213

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           +    A+  K+ F+ H+S+E+R+PL  I+G  +++          +  +    I +SS +
Sbjct: 214 DDADVANHAKSEFLAHMSHEIRTPLNTIVGMNEIIMRETH---EEQTMKCARDIQSSSDV 270

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L++LV D+LD + +++G M++       + LL+ V   + ++  + N+ +       L +
Sbjct: 271 LVDLVRDVLDFSKIESGRMEIVNEEYHFSQLLSNVLSVMESRARQKNLELDAEVQETLYN 330

Query: 680 -FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKNNGSSIP 731
               D  R+ +I   ++ NA+ ++ KGS + +    +N        + + +V++ G  I 
Sbjct: 331 DLKGDSARICRILINLIGNAVKYTKKGS-IRVTVHMENHGADPHNVELVMAVRDTGIGIK 389

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           E+  + +F  F        R   G GLGL+I    + + GG ++  S     TT   +I
Sbjct: 390 EEDQERLFKDFERLDLSNNRSIEGTGLGLAITYHLVEMMGGSITCHSKYGYGTTFVVKI 448


>gi|150007164|ref|YP_001301907.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149935588|gb|ABR42285.1| two-component sensor histidine kinase with response regulator
           receiver domain [Parabacteroides distasonis ATCC 8503]
          Length = 793

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 140/343 (40%), Gaps = 27/343 (7%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-------- 519
                 ++   + + +A    +Y  E    +L   +  S D     LQ + E        
Sbjct: 170 GMPVPPIASNDYEKEVAEFHHKYVPEDQRDELTRNL--SLDHVLSILQNSREYVLFCQVM 227

Query: 520 ---LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFV 573
              +  D  L +S         +LT  ++ +    ER    L +  +  + A++ K+ F+
Sbjct: 228 ENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFL 287

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  IIG T +   S       +    ++ I  SS +LLNL+N++LD++ V
Sbjct: 288 SRMSHDIRTPMNAIIGMTTI--ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKV 345

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           ++G + L      + +LL  V   + T + +     +V     K    + D QR+ Q+  
Sbjct: 346 ESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLL 405

Query: 693 KILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +LSNA+ ++     + L+           G F  +V +NG  I  D    VF  F    
Sbjct: 406 NLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAE 465

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  +G GLG++I  +  ++  G + + S     +     
Sbjct: 466 DATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFT 508


>gi|330859215|emb|CBX69566.1| signal transduction histidine-protein kinase barA [Yersinia
           enterocolitica W22703]
          Length = 976

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHV 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G 
Sbjct: 394 NKDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S  E  +T   
Sbjct: 454 GISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 478

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 5/250 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +      +L E    ++     +  F+ +VS++L++PLT I GF   +      S   
Sbjct: 217 PQEVRELAHSLNEMMRKVQAGQRAQRDFIANVSHDLKTPLTAIQGFAQAILDGTAQS-PE 275

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
                   I   ++ +  LV D+L LA  DAG   L +  +   DLL E  +  +    +
Sbjct: 276 TLRNAATVIYNEASRMYRLVLDLLTLARFDAGTADLVFEKVDPQDLLRETVRRFSPLAQK 335

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + +++  D  L    AD +RL+Q  + ++ NA+ ++  G T++L+   + G  +  V+
Sbjct: 336 AGVILRLE-DASLPVLFADGERLMQALANLMDNALKYTPAGGTIVLRGKVEEGHLLLEVQ 394

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRG---VGLGLSIVESFINLHGGHVSISSSDEGV 781
           + G  I  +    +F RF        + G    GLGL IV   +  HGG V + S     
Sbjct: 395 DTGKGISPEEQTRIFERFYRGNPSRSQDGEQSSGLGLPIVREILRAHGGEVRLYSEVGKG 454

Query: 782 TTINCRIPSK 791
           +     +P +
Sbjct: 455 SCFTLVLPLQ 464


>gi|312880886|ref|ZP_07740686.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310784177|gb|EFQ24575.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 868

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 156/355 (43%), Gaps = 25/355 (7%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            E        G  +  N AF +L     ++++          + SR        D   + 
Sbjct: 253 PEPAFFLDVQGFFRDCNGAFEALTGLSRDQMTGRLFADLPLDSLSRL-------DPLESR 305

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA---QTMLTFVNVTDSVRAERALTEKNE 560
             S D       GT + L          P  +      +    +VT+  R E  L E  +
Sbjct: 306 TLSLD--FSGPSGTRQFL------LRRSPCNDGKEEGLLGILFDVTERARGEAILREARK 357

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A  +AD+ K++F+  VS+E+R+PL+ ++G ++L   +    L  +Q  +++ I  +ST +
Sbjct: 358 AAEEADQAKSAFLAQVSHEIRNPLSTLLGLSELCLGT---PLQPRQRHWIQSIHQASTHM 414

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
           L + ND+LDL+ V+AG ++L      L  LL +  +++  +     + + +  +  L   
Sbjct: 415 LRIANDVLDLSRVEAGKLELQQVPYSLPQLLRDALKAVLPQGEAKGLALALREEPGLPER 474

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKS 737
            + D  R+ QI   +L+NA+ F  +G  V L+A +D        +V++ G  I  +  + 
Sbjct: 475 LLGDPGRIQQILVNLLTNAVKFCDRG-RVELRARKDPQGPWLELAVEDTGQGIEPEDLRR 533

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           VF  F   +     +G+GLGL I        GG++  SS     TT   R+P +E
Sbjct: 534 VFQPFWQASPSTSAQGMGLGLPIALQLTRSMGGNIEASSLPGSGTTFLVRLPLEE 588



 Score = 38.8 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
           +       N +    WE+    L   P   EL      A           W+  + S  +
Sbjct: 26  RQGRTVLCNEAAERFWEVPPGGLCGLPLPPEL------ATPPAVPSVSSAWRRLLPSSPR 79

Query: 384 SSETHKDTWHLPNGQTLHVIV 404
            SET    + LP+GQ  HV++
Sbjct: 80  DSETTGFRYALPDGQGTHVLL 100


>gi|256840539|ref|ZP_05546047.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides sp. D13]
 gi|256737811|gb|EEU51137.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides sp. D13]
          Length = 795

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 27/343 (7%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-------- 519
            T    ++   + + +A    +Y  E    +L   +  S D     LQ + E        
Sbjct: 172 GTPVPPIASNDYEKEVAEFHHKYVPEDQRDELTRNL--SLDHVLSILQNSREYVLFCQVM 229

Query: 520 ---LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNSFV 573
              +  D  L +S         +LT  ++ +    ER    L +  +  + A++ K+ F+
Sbjct: 230 ENGVFRDKKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFL 289

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+++R+P+  IIG T +   S       +    ++ I  SS +LLNL+N++LD++ V
Sbjct: 290 SRMSHDIRTPMNAIIGMTTI--ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKV 347

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFS 692
           ++G + L      + +LL  V   + T + +     +V     K    + D QR+ Q+  
Sbjct: 348 ESGHILLTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLL 407

Query: 693 KILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            +LSNA+ ++     + L+           G F  +V +NG  I  D    VF  F    
Sbjct: 408 NLLSNAIKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAE 467

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  +G GLG++I  +  ++  G + + S     +     
Sbjct: 468 DATLRNIQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFT 510


>gi|218886242|ref|YP_002435563.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757196|gb|ACL08095.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1055

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 5/256 (1%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M          RA  +L    +A   A+  K+ F+ ++S+ELR+PL  ++G   LL    
Sbjct: 618 MHGMWEHIARRRAMVSLRRAKDAAEAANRSKDEFLANMSHELRTPLNGVLGMLQLL---D 674

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ ++  Y+     S   LL +++D+LD++ + AG   L         +L +V + +
Sbjct: 675 GPDLSDERRGYLRTAVESGHALLRIIDDLLDISALGAGGSGLRDEPFDPAAVLRQVAEMV 734

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   + + +I+D        D  RL Q+   +++N + F+ +G   IL        
Sbjct: 735 DPAARRRGLALGLIADALPLRVRGDAARLRQVLYNLVANGVKFTHQGGVDILACPVGGDR 794

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            +F+V++ G  IPE+    V   F        RR  G GLGL IV   +   GG +++ S
Sbjct: 795 LLFTVRDTGIGIPEEKLPVVCEPFAQVDGSSTRRYQGAGLGLGIVRRQVARMGGTMTMES 854

Query: 777 SDEGVTTINCRIPSKE 792
            +   T+++  +P  E
Sbjct: 855 EEGVGTSVHVCLPLPE 870



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 32/214 (14%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFD---------QNRYLQFHNRSFVELWEIDLAFLAT 348
              +         +  N+   + +            +  L   N +   L  +  A    
Sbjct: 63  AEQLRRDAELFRGVFRNMNAGVMVLRPVRAHGDDCADFTLLDINPAGERLSRLTRAE--- 119

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--------GQTL 400
             S   LL     +  LP  +   T ++ +   ++S        HLP+        G   
Sbjct: 120 --STGSLL-----SGLLPVPVA-ATLRQALARAWRSGIAE----HLPSFLYSDKIRGCWR 167

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           H  ++    G  + ++E++T +           +     +++  + V  FG D R+   N
Sbjct: 168 HYFISRADSGDLLLIYEDVTERYMALANLAAGEEKYRALVENTPDIVMRFGGDLRLSYVN 227

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            A        E  +  G     +A   + ++   
Sbjct: 228 AAVVPYLGPPEALMGRGVAELGLAPQVADFWARQ 261



 Score = 45.3 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 82/270 (30%), Gaps = 35/270 (12%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
            L  IY ++ E  +    L+     ++ L ++   +V        + + N +        
Sbjct: 178 DLLLIYEDVTERYMALANLAAGEEKYRALVENTPDIVMRFGGDLRLSYVNAAVVPYLGPP 237

Query: 230 GIVFQKAIGE------SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
             +  + + E          +  +++  + S   ++ ++              +    V 
Sbjct: 238 EALMGRGVAELGLAPQVADFWARQLRGVLESGRPVQTDYVFHGPA----GRVLFDWRLVP 293

Query: 284 NSFGEAGIA------IDVSKEITVNDQLTH-TYEILHNLTVAIAIFDQ-----NRYLQFH 331
               + G++       DV+++ +          +++ +  V   + D      +      
Sbjct: 294 ERGVDGGVSSVLSLLRDVTRQRSTEHDFRTLFRKLITSFAVHEVLLDAGGRPVDFRFLTV 353

Query: 332 NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET-HKD 390
           N +F  +              +++L    S    P+      W   +  V  + E  H +
Sbjct: 354 NPAFEAM---------AGRRAEDVLGRTASEVFGPQD---SAWIAVLGRVALTGEPLHTE 401

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
            +    G+ L + V          +  ++T
Sbjct: 402 RYSRNMGKWLEMTVYRVRERQFAIIAADIT 431


>gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces
            ambofaciens ATCC 23877]
          Length = 1331

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 126/269 (46%), Gaps = 16/269 (5%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 738  QNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQ 797

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L  KQ +Y   I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+ 
Sbjct: 798  NPSRNLTPKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEA 857

Query: 657  SIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +      +  ++  V  + G     + D  RL Q+   +LSNA+ F+ +G  V L     
Sbjct: 858  TFRPMTTQKGLQFTVSTAAGAPADLLTDDSRLRQVLRNLLSNAVKFTERGG-VELAVEPA 916

Query: 716  NGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
            + D              F VK+ G  IPE   +S+F  F         +  G GLGLSI 
Sbjct: 917  HDDEVPPGVVRGGAVVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSIT 976

Query: 762  ESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 L GG V++ S+ +  +T    +P+
Sbjct: 977  REMAQLLGGAVTVDSTPDRGSTFTLFLPA 1005


>gi|294649346|ref|ZP_06726778.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824786|gb|EFF83557.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
          Length = 937

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 17/246 (6%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +    +++ K+ F+ ++S+ELR+PL +I GF  LL   +  +L+++Q+ Y++ I  
Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNLYLQTIRK 333

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS  LL L+N++LD + +DAG ++L  +   L + + +V   ++    + +I +      
Sbjct: 334 SSAHLLALINNVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYAE 393

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSS 729
            +    V D  R  QI + ++SNA+ F+  G  +I++   ++ D       FSV+++G  
Sbjct: 394 NIPQHVVGDALRFKQILTNLISNAIKFTPDGE-IIVRVRMEDDDIGQCLLHFSVQDSGIG 452

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF-INLHGGHVSISSSD-----EGV 781
           +     K +F  F         Q  G GLGL+I +   ++L  G +    +      E  
Sbjct: 453 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVVHLMRGQIGFEDNQERAPTEKG 512

Query: 782 TTINCR 787
           +T    
Sbjct: 513 STFWFT 518


>gi|218247510|ref|YP_002372881.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218167988|gb|ACK66725.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 626

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 537 QTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           Q  +   ++ + ++A    +    +  + A+ +K+ F+   S+ELR+PL  IIG   +LK
Sbjct: 361 QLAIAIQDMVERLQAWGEEVVSAWQEAQNANRLKSEFLATTSHELRTPLNGIIGCLHILK 420

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                S   ++ ++++    ++  LL +++D+LDLA ++AG + ++   + L  LL+EV 
Sbjct: 421 EGYCDS-KEEELEFLQQAEQAAVHLLGIIDDVLDLAKIEAGKLSVSLEPVDLTSLLSEVI 479

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                 + +  + +    +       AD ++L Q+   +L NA+ F+ KG  + +K   +
Sbjct: 480 NLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVILNVLGNAIKFTEKG-NITIKTHIE 538

Query: 716 NG----DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
                     +VK+ G  I       +F  F  V  +   +  G GLGL+I  + + L G
Sbjct: 539 ENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGSTTRKYSGTGLGLAISRNLMQLMG 598

Query: 770 GHVSISSSD-EGVTTINCRIP 789
           G++++SS   +  TT+   +P
Sbjct: 599 GNITLSSEGIDLGTTVKICLP 619


>gi|171689512|ref|XP_001909696.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944718|emb|CAP70829.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2091

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 19/252 (7%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L      L++A + K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I 
Sbjct: 1398 LKLLETKLKEAMDSKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQ 1454

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S+  LL ++NDILDL+ VDAG+MKLN+       L+ +V + ++T      + +  + +
Sbjct: 1455 TSANSLLMIINDILDLSKVDAGMMKLNFEWFHTRSLIEDVNELVSTMAIAKRLELNYVVE 1514

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-----VI----LKAARDNGDFIFSVK 724
              + ++V  D+ R+ Q+   ++ NA+ F+S+G       VI    ++  +      FSV 
Sbjct: 1515 EDVPAWVKGDKVRIRQVLLNVIGNAIKFTSQGEVFSRCKVIVPEGVELGKAEIMLEFSVI 1574

Query: 725  NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            + G    E   + +F  F     +   Q  G GLGL I      LHGG ++ ++     +
Sbjct: 1575 DTGRGFTEQEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGGTMNGTAVPGKGS 1634

Query: 783  TINCR----IPS 790
            T        +P+
Sbjct: 1635 TFTFTARFGLPT 1646


>gi|119511392|ref|ZP_01630504.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119463937|gb|EAW44862.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 411

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 162/405 (40%), Gaps = 16/405 (3%)

Query: 390 DTWHLPNGQTLHVIVTSNPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
           D   L +G+            G     +W   ++T     E     L +    T+   + 
Sbjct: 14  DILELKDGRIFAQYSQPQWLEGKIMGRLWSIWDITESQRTEE-VPQLNEASWCTLAETTN 72

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
                     +   NPA   L    +  L  G   R +     R        +     I 
Sbjct: 73  ASIFIIQGWDLSYMNPAAEVLTGYTKEELITGFDARQLFKNKKRKQVHDKDLEYQEIKIL 132

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             +   + L   + +L D    + +I           +++T+  +AE  L++  E +++ 
Sbjct: 133 EKNGTERWLACAVAMLDDQETPFEMI---------AGIDITEYKQAESDLSQTLEQIKQL 183

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            E+K  F+  V ++ R+PL  +     LLK         K    +++I +    +  +++
Sbjct: 184 SELKAQFMSMVCHQFRTPLNVVSFSNSLLKRHINYCQEEKTGPLLDHIQSGVEQITKMLD 243

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           DIL  A  +A  +  +   + L +  NE+   + T   EN  RI  +S G+  +   D++
Sbjct: 244 DILFFAKAEAAKLNFDAKPLNLVEFCNELIAQMQTNGSEN--RINFVSQGRYITACMDQK 301

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            L  + S +L NAM +S  GS V  K   + G  +F V + G  IP      +F  F   
Sbjct: 302 LLEPMISNLLDNAMKYSPIGSVVDFKLFCECGKVVFQVTDRGIGIPVADIPRLFEPFYRG 361

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++     G GLGLSIV++ ++LH G++++ S     TT    +P+
Sbjct: 362 SNIHHLPGTGLGLSIVKTLVDLHRGYIAVESELGVSTTFTMMLPA 406


>gi|119469631|ref|ZP_01612500.1| putative membrane bound sensor or esterase [Alteromonadales
           bacterium TW-7]
 gi|119446878|gb|EAW28149.1| putative membrane bound sensor or esterase [Alteromonadales
           bacterium TW-7]
          Length = 936

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 170/421 (40%), Gaps = 46/421 (10%)

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           K NI  V++  E H +   + +G   H ++ ++        +EN    + L  KYN  ++
Sbjct: 320 KTNIERVFELLEEHSNDRIMRDGLGTHALIEASRGN-----YEN---AMQLHEKYNNELR 371

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 D + + +AV     +    N   +         L     ++ +           
Sbjct: 372 KLRS--DSIVKALAVLEKQFKATQLNQEIKE--------LKQDRKLQELKMHQRSQLTVF 421

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
               LF  I+T     R+                       A+            +    
Sbjct: 422 IFVLLFLVIVTGVALYRR----------------------GAEKRAKQYLAEQVAQRTAE 459

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  + LR A+++K+ F+ +VS+E+R+PLT I+G TD L          +    +  I 
Sbjct: 460 LQDVAQELRAANDVKSQFLANVSHEIRTPLTAILGQTDDLMNGLYEP--EQLKDELAIIQ 517

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S  L +L+ND+LDL+ ++A  ++LN S   +  L+N+V      +    N+R+ + + 
Sbjct: 518 RHSNHLKSLINDVLDLSKIEANRLELNVSCFDMVQLVNDVHAMFNPQAKAKNLRLVLENK 577

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            G       D  R+ QI   + +NA+ F+  G  V++   +     +  VK+ G  +   
Sbjct: 578 VGDEFYTRLDIMRVKQILINLCANAIKFTQSG-QVLIALNKTEQGIVLIVKDTGIGMNSS 636

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             K +F  F    +   RR  G GLGLS+ +   ++ GG++S+ S  +  +  +  +P  
Sbjct: 637 QLKLIFEYFSQADNSISRRFGGTGLGLSLSQQLASMMGGYISVQSEYKKGSQFSFFLPCA 696

Query: 792 E 792
           +
Sbjct: 697 Q 697


>gi|330448533|ref|ZP_08312181.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492724|dbj|GAA06678.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1305

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 162/380 (42%), Gaps = 15/380 (3%)

Query: 419 LTVQVDLETKYNTLVKVQ-GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +T + ++E K   L     G  I H+ +    F  +      +    +      ++L   
Sbjct: 525 ITQRKNVEQKLTYLTNNFDGALIQHIQKSEDPFDVE--FLFISEKISNFINLNASQLYRH 582

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            HI        R   +S    +  A+   +      +Q          L   I  + N  
Sbjct: 583 PHIL-FEQMKKRDDIDSLHDAMQQAVHAGYWSTNLQIQTQTYHPRWIELRCQISEVENGW 641

Query: 538 TMLTFV-NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
              T + ++T +   + AL E N     A E K+ F+  +S+E+R+P++ I+   +L++ 
Sbjct: 642 QWNTIIIDITQAKEQQVALMEANAKSLAATESKSRFLAMMSHEIRTPISGILSLLELME- 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +   +  Q    +S S   LLN+VND+LD + ++AG + +N S  VL+DL++ + Q
Sbjct: 701 --PHAQKPELRQIHHNLSQSGLNLLNIVNDVLDFSKIEAGKLNINPSRHVLSDLIHALVQ 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKG----STVILK 711
             +   ++  +   +  D  +  +++ D  RL Q+ + +L+NA+ F++ G    +  ++K
Sbjct: 759 PHSIHANQKEVSFTLWLDPAVAHYLSFDDFRLTQVLNNLLNNAIKFTTMGNIHLAVDVVK 818

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHG 769
                    F++ + G  I  +    +F  FV       RR  G GLGLSI    + L  
Sbjct: 819 ETNTEQTLAFTIHDTGIGIKPEDLSQLFQPFVQVEQSSNRRFSGTGLGLSICYQLVQLMD 878

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +  +S     T+    +P
Sbjct: 879 GDIHATSEVGKGTSFTVIVP 898


>gi|254518779|ref|ZP_05130835.1| predicted protein [Clostridium sp. 7_2_43FAA]
 gi|226912528|gb|EEH97729.1| predicted protein [Clostridium sp. 7_2_43FAA]
          Length = 686

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/501 (18%), Positives = 194/501 (38%), Gaps = 18/501 (3%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--LAFLATNPSND 353
            + I ++++      ++ N+T  +   D+   ++F N +  E +     L  L     N 
Sbjct: 167 EENIKLSEEFFKYKNVVENMTDGLIFLDKEGKVEFLNGAAEEFFYEPDKLDVLGQTLDNT 226

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
              +   +  ++ E  + +  K    +  +      D     +     +   +N   G I
Sbjct: 227 RYYDLNGNTLEINELPSSRALKGENITSMRVVSERPDKTIKTDISCNPLYDQNNEIVGAI 286

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEEN 472
                L   + +E             I++L   +  F  PD ++   N   +   +   +
Sbjct: 287 TSIRCLNDSLRVENCLKKQRDNFYNIINNLDLLICRFSYPDFKVIHYNKKVKE--EIIYS 344

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
             +  +    I        ++    +     + S  + +  L G    +         + 
Sbjct: 345 NENTYSKFLQIPCNDRETLDKEQKNN----AMISGSNIKVVLSGKERYIETFYQYIFDVD 400

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + +   +++TD V  ++ L        +  + +  F   +++E R+PLT +   T 
Sbjct: 401 GEIKEVIKVGIDITDKVSHQQELE-------EILKTQEEFFSFIAHEFRTPLTVMSSTTQ 453

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL       L  K   Y++ I+ S+   L LVN++LD+   DAG + +N     +  +  
Sbjct: 454 LLNLVYRKDLPEKVVGYIDKINLSTLQQLRLVNNLLDITRADAGYLNVNLRNYDIVSMSK 513

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
            + +S+ +     +I ++   +        D ++  +I   +LSNA+ F+  G TV ++ 
Sbjct: 514 AITESVRSFAVRKDINLEFTCNIDKKIIAVDDEKYERILLNLLSNAIKFTKNGKTVKVEL 573

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGG 770
             ++     +VK+ G  IP++    +FNRF    N    +  G G+GL +V   IN  GG
Sbjct: 574 DSNDRFTNINVKDEGVGIPKEKQDVIFNRFGQVNNDLTRKSEGTGIGLCLVRLLINSMGG 633

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + ++S     +T    +P+K
Sbjct: 634 RIELTSQLGKGSTFTIILPNK 654


>gi|221211947|ref|ZP_03584925.1| response regulator/sensor histidine kinase [Burkholderia
           multivorans CGD1]
 gi|221168032|gb|EEE00501.1| response regulator/sensor histidine kinase [Burkholderia
           multivorans CGD1]
          Length = 1007

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 155/373 (41%), Gaps = 30/373 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     ++    I     G+A+    +G + L N       +              ++  
Sbjct: 393 RLKDSEQLSRTLIRTAPVGLALIDAANGAVLLCNETMDRYERATPR--------EPLSVR 444

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTFV 543
             R + +S G  L   I         +L+G      D+ L  ++  +        + T V
Sbjct: 445 LWRAFRDSHGTSLSREI---------ALEGAAGPAGDTHLLVNVTRVKYRGADALLGTVV 495

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T     E++L     A  +A+  K+ F+  +S+E+R+PL  +IG  +L+      +L 
Sbjct: 496 DITARKLTEQSLDAARRAADQANRAKSVFLATMSHEIRTPLNAVIGNLELMSR---DTLP 552

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q + +    ++S+ LL+++ND+LDL+ V+AG ++++        LL++V +S      
Sbjct: 553 DVQRKRLATAHSASSSLLHVLNDVLDLSRVEAGQLRIDAVPFDCAALLHDVTESFRPLAA 612

Query: 664 ENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN--GDF 719
              + +       L  + + D  R+ QI S +LSNA+ F+  G   V   A R+    + 
Sbjct: 613 AKQLSLTCDVAPTLARYRIGDPVRIRQIVSNLLSNAIKFTDAGGVAVTADAVREGRLDEV 672

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  IP     ++F  +         +  G GLGL++    +    G +++ S 
Sbjct: 673 AVRVTDTGIGIPHAAQAAIFELYRQADDSIHRRYGGTGLGLALCRRLVAAMDGDLAVDSE 732

Query: 778 DEGVTTINCRIPS 790
               +T +  +P 
Sbjct: 733 PGIGSTFSVVVPL 745


>gi|95931098|ref|ZP_01313824.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95132843|gb|EAT14516.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 1279

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 126/250 (50%), Gaps = 12/250 (4%)

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              +AE AL    EA  +A + K+ F+ H+S+++R+PL ++IGFTD+L T     +   Q 
Sbjct: 778  RRQAEAALLVAKEAAEQATKAKSVFLAHMSHDIRTPLNSVIGFTDILDTLIKDPV---QK 834

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y+  I      LL ++NDILDL+ ++AG M L+   +  + L  +++Q    ++   N+
Sbjct: 835  GYLRSIKIGGKALLGIINDILDLSKIEAGQMVLHRENVNPHQLFRDMEQLFHEQIRHKNL 894

Query: 668  RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST------VILKAARDNGDFI 720
               V  D  L  S + D  RL QI   ++ NA+ F+ +G        +   A     D  
Sbjct: 895  NFVVDVDEALPQSLLVDAVRLRQILLNLIGNAIKFTEQGYVTLRVQKIFRDAQCSKLDLQ 954

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
              V+++G  I  D  +S+F  F  +  + +RR  G GLGL+I +  + +  G + ++S  
Sbjct: 955  IDVEDSGMGISPDDHESIFQMFQQSKGQDERRFGGSGLGLAICQKLVTMMDGEIHVASEL 1014

Query: 779  EGVTTINCRI 788
               +T +  +
Sbjct: 1015 GQGSTFSVIL 1024


>gi|332160479|ref|YP_004297056.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664709|gb|ADZ41353.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 956

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHV 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G 
Sbjct: 394 NKDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S  E  +T   
Sbjct: 454 GISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|293392823|ref|ZP_06637141.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
           4582]
 gi|291424682|gb|EFE97893.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
           4582]
          Length = 909

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    L++ Q+ Y++ I
Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTDLSATQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L +    L + L+EV   +A   HE  + + +  
Sbjct: 334 ERSANNLLTIINDVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDV 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA---RDNGDFIFSVKNNGS 728
              +    + D  RL Q+ + +L NA+ F+  G+  + ++         +    + + G 
Sbjct: 394 HNDVPEQVIGDSLRLQQVITNLLGNAVKFTETGNIDIRVELRNRFERQVELEVQIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +   GG +   S     +T   
Sbjct: 454 GISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWF 513

Query: 787 RI 788
            I
Sbjct: 514 HI 515


>gi|39952003|ref|XP_363718.1| hypothetical protein MGG_11174 [Magnaporthe oryzae 70-15]
 gi|145020511|gb|EDK04640.1| hypothetical protein MGG_11174 [Magnaporthe oryzae 70-15]
          Length = 1307

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 158/381 (41%), Gaps = 26/381 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ ++D+E K   L  +  ETI+++ + +++F  + +    +     +   + +     
Sbjct: 587 DMSRKIDVEAKGEIL--ILKETINNMVDRLSIFCNEVQRVAKDVGVDGIMGGQADVAGLK 644

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + I    +   N     +L A +    D    +  G    L    +E       +  
Sbjct: 645 GRWKEITTDVNTMAN-----NLTAQVRAFGDITNAATDGDFTKL----VEVEASGEMDEL 695

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  V +   + +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +
Sbjct: 696 KRKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT 755

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q + +  ++  +  LL +++DILDL+ ++A  M +      L   +    ++
Sbjct: 756 ---DLTQYQREMLNIVNNLAMSLLTIIDDILDLSKIEAKRMVIEEIPYTLRGTVFNALKT 812

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +A K ++  + +    D  +    + D  RL QI   ++ NA+ F+  G  V L   + N
Sbjct: 813 LAVKANDKFLDLTYRVDSSVPDHVIGDSFRLRQIILNLVGNAIKFTEHGE-VSLTIQKGN 871

Query: 717 G--------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
                       F V + G  IP D    +F+ F        R   G GLGLSI +  +N
Sbjct: 872 DVTCLPNEYMIEFVVSDTGIGIPTDKLGLIFDTFQQADGSMTRKFGGTGLGLSISKRLVN 931

Query: 767 LHGGHVSISSSDEGVTTINCR 787
           L GG V + S     ++    
Sbjct: 932 LMGGDVWVKSQYGKGSSFYFT 952


>gi|313891467|ref|ZP_07825083.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Dialister microaerophilus UPII 345-E]
 gi|313120242|gb|EFR43418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Dialister microaerophilus UPII 345-E]
          Length = 650

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 159/384 (41%), Gaps = 38/384 (9%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           +++ +  Q +   KY   ++         ++ + +G+ +      I   N     ++   
Sbjct: 213 LYKKVAEQRNQIEKYLEDMEEDRNNIRIVMNTIYDGIILLNDKKEIIDYNRRAEKIFNPS 272

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVL-EY 528
           E+        R I++    +       D   A+  ++ DE R+    T+      V+   
Sbjct: 273 ED-----KRFRKISSMYCDH-------DWLRAVDRAYRDENRQKYTMTIADKPFKVIMTR 320

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I+P      ++   ++T    AE+              ++  F  +VS+EL++PLT I 
Sbjct: 321 TILPEEQHGVLIVLRDMTAEHIAEK--------------MRREFSANVSHELKTPLTTIS 366

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF +++              +   I   S  +L+L++ I+ L+ ++     +++  + ++
Sbjct: 367 GFAEMIAKGMCKD-TEDIKNFSNKIHQESRRMLSLIDTIMHLSKIEEKETTISWKLVSVD 425

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +L  V   I ++  + +++I +  D +      +   L ++F  +L NA+ ++ KG  +
Sbjct: 426 SVLKYVADLITSQATKKDLKINL--DIEPVYMYGNAALLSELFMNLLDNAVKYNVKGGNI 483

Query: 709 ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFI 765
            +   R     +  ++ + G  IPE+    VF RF            G GLGLSI +  I
Sbjct: 484 TVHIKRLKEKLMKITISDTGVGIPEEKQNRVFERFFRAEESRNKATGGSGLGLSICKHII 543

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             H G + ISS +   TT+   +P
Sbjct: 544 ERHNGKIEISSIEGKGTTVIVELP 567


>gi|294667422|ref|ZP_06732639.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292602755|gb|EFF46189.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 1191

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 11/251 (4%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFS 722
            +      D  L      D  R+ QI   +L NA+ F+ +GS    V              
Sbjct: 906  LAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLPQHTRQGLRVE 965

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  +  +    +F RF          +  G GLGL+I        GG V+++S   
Sbjct: 966  VRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASELG 1025

Query: 780  GVTTINCRIPS 790
                    +P 
Sbjct: 1026 QGACFVVELPL 1036


>gi|196231100|ref|ZP_03129960.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224930|gb|EDY19440.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 786

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/433 (21%), Positives = 179/433 (41%), Gaps = 25/433 (5%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN-LTVQVDLETK 428
           +    ++         ET +    + +G+ +  ++             + +         
Sbjct: 224 DITALEDAFRDRTGLGETGEAILGMSDGKQIRYLIPPRNSPPATGTSADSVPALKAATEN 283

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
             +LVK   +       G+AV      +  SN        T+E  L     I ++     
Sbjct: 284 RESLVKGVDQR------GIAVIAAGCPLGYSNWGLVIKMDTKEAYL----PILHVVQLEV 333

Query: 489 RYYNESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT-FVNV 545
                  G  L AA  +  SF    + L      +++   E +++P+ +A    T   N 
Sbjct: 334 LSGAVVIGLGLIAAYFLARSFTHPVRQLTRAASRVTEGDYE-TMVPVKSADEFGTLSTNF 392

Query: 546 TDSVRAERALTEKN----EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +   A RA   +     EALR AD  K+ F+  + +ELR+PL+ I     L   +  G 
Sbjct: 393 NEMTTAIRARRMERDRAEEALRHADRRKDEFLAMLGHELRNPLSAIANAVRL--WNVAGD 450

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            +S        I   +  L  LV+D+LD+A +  G ++L    + +N+ ++ V +++   
Sbjct: 451 DHSAVELAHGVIERQTDNLSRLVDDLLDVARITEGKIELRKRPVDVNESIHRVVEALRPA 510

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           + +    ++++ +     +V AD  R+ QI S +L+NA+ ++ KG  + ++A R+  + +
Sbjct: 511 IDQQRHELQLLLENDAKIWVDADPTRVEQIISNLLTNAIKYTRKGGEIRIEARREGHEAV 570

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  I   M   +F+ F    H       G+G+GLS+    + LHGG ++  S  
Sbjct: 571 ISVNDTGIGIAPRMLPQIFDLFTQGDHSLDRPTGGLGIGLSLCRRLVELHGGTITAFSEG 630

Query: 779 -EGVTTINCRIPS 790
               +T    +P+
Sbjct: 631 VGRGSTFTVHLPT 643


>gi|254226732|ref|ZP_04920308.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
 gi|125620749|gb|EAZ49107.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
          Length = 1177

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I 
Sbjct: 494 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 553

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 554 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVS 613

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP + 
Sbjct: 614 EQPVWVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQ 672

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 673 LEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPL 730


>gi|261410070|ref|YP_003246311.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261286533|gb|ACX68504.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 459

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 116/245 (47%), Gaps = 6/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +     ++  + L + ++++  FV +VS+E++SPL +I GF+  L+T +L     +Q
Sbjct: 217 ELGQLADHFSQMAKGLAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLS--EEQQ 274

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I A S  +  L   +L LA++D     L+ ST  + + + +V           +
Sbjct: 275 QHYLSIIEAESRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVLFHTEWNWRSKD 334

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + I +           D+Q L Q+++ +++N++ F++    + L+    N      + + 
Sbjct: 335 LTIDMSLPPT--YVYGDQQLLHQVWTNLITNSIKFTAPEGAISLRVIEHNTQCRIEISDT 392

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP++    +FNRF        R     GLGLSI +  + LHGG + ++S     TT 
Sbjct: 393 GIGIPQEHLPHIFNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTF 452

Query: 785 NCRIP 789
              +P
Sbjct: 453 TVILP 457


>gi|110596751|ref|ZP_01385041.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341438|gb|EAT59898.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 672

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L +       A+  K+ F+ ++S+E+R+PL  ++G T+LL  +    LNS Q  Y + 
Sbjct: 269 ESLKKSRVEAEIANRAKSEFLANMSHEIRTPLHAVVGMTELLLDT---PLNSTQRHYTDT 325

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I AS+  L  L+NDILD   +++G +    S   L  L  E+   +     +  +++  I
Sbjct: 326 IQASTKQLHQLINDILDFTKIESGQLDKVKSPFNLRALFTELSSILTGNAEKAGLQLSFI 385

Query: 673 SDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNG 727
               + G  +     L Q    ++ NA+ F+ KG  V+  A             SVK+ G
Sbjct: 386 IPESVAGDLIGYPIYLKQALINLIQNAIKFTYKGGIVVQVATESETPGEITLRISVKDTG 445

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP++  + VF RF        R   G GLGL+I    +   GG ++++S     +   
Sbjct: 446 IGIPDEKKELVFQRFTQLDSSATRKAGGAGLGLAISTQLVEFMGGKLNLNSRKNEGSEFW 505

Query: 786 CRI 788
             I
Sbjct: 506 FVI 508


>gi|332974890|gb|EGK11803.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 463

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 124/262 (47%), Gaps = 9/262 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +  L      +     R  +    +L + + ++  FV +VS+E++SPL +I GF+  L
Sbjct: 206 NYRIQLNTSRQDEIGNLARHFSMMANSLERLEAMRQEFVSNVSHEIQSPLASIQGFSQTL 265

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T  L     ++ QY+  I   S  L +L   +L LA++D     L+ +   +   + EV
Sbjct: 266 RTESLP--EEEREQYLSIIENESRRLSSLSKQLLMLASLDKEETALDQTEFDVAAQIREV 323

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + +     +  + IK  +D       AD + L Q+++ +L+NA+ F+  G T+ +    
Sbjct: 324 LRMLEWNWRDKELAIK--TDLPPTRIRADAKLLHQVWTNLLNNAIKFTEPGGTITVTIDD 381

Query: 715 -DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG----VGLGLSIVESFINLHG 769
            + G     V++ G  IP +    +F RF        R+G     GLGLS+V+  ++LHG
Sbjct: 382 FEEGGIEVKVRDTGVGIPGEDLPHIFERFYKADKSRSRKGKESGSGLGLSVVKKVVDLHG 441

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +S+ S     T I   +P K
Sbjct: 442 GTISVESEPGAGTGIRVWLPGK 463


>gi|313676409|ref|YP_004054405.1| multi-sensor signal transduction histidine kinase [Marivirga
            tractuosa DSM 4126]
 gi|312943107|gb|ADR22297.1| multi-sensor signal transduction histidine kinase [Marivirga
            tractuosa DSM 4126]
          Length = 1040

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/599 (16%), Positives = 219/599 (36%), Gaps = 52/599 (8%)

Query: 216  LWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
             W N+++  + E  G    +   +  + +  E + +              V  L+ G  K
Sbjct: 463  TWMNLAHPDDLEESGRRLNECFEKKAEYYDFEARMKHKDGHW--------VWVLDRG--K 512

Query: 276  SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFH 331
             ++  +        G   D+S+     + L  + E       N  + +A+ DQN      
Sbjct: 513  VFEWTKEGKPLMMYGTHQDISERKQKEEALRISEEAFRGNFENAAIGMALLDQNGKWLKV 572

Query: 332  NRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
            N++  +        L          +     +   +    +   E   + Y+  + +   
Sbjct: 573  NKNVCQTVGYSKEELL----ELTFQDITHPDDLHADLDLLQELVEGKRNHYQMEKRY--- 625

Query: 392  WHLPNGQTLHVIVTSN--PRGGTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSE 445
            +H        ++  S      G +  F     +++     E +   L+      +D  +E
Sbjct: 626  FHKEGHIVYIILAVSMVKDERGNVLYFISQIIDISKLKKTEIRLKALLAENKALMDATTE 685

Query: 446  -GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA-------ATCSRYYNESDGW 497
                    +G I  +N   + +   ++  ++ G+ I+NI                 S   
Sbjct: 686  VAFVSTDKEGNILDTNIGVQRILGYDKASIT-GSSIQNILFLEEEWNQIARELMGSSTKN 744

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---- 553
               A  + S  + ++   G   +     +   I+P+  + + +     TD          
Sbjct: 745  YSTADFLHSLANNKQHNLGEWTMKGKDGI---IVPVLLSVSEIIQDKNTDGYLFAATDIS 801

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             +    + L + +E    F    +++L+ PL  I  +  +L+      L+ K + Y+   
Sbjct: 802  QIKSIQKELEQKNEELEQFAYITAHDLKEPLRGITSYLSILQKKYSTHLDEKANSYINIA 861

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            S S+  +  L++DILD +    G   +    + LN LL+ +  +    +++NN+   V+S
Sbjct: 862  SHSAKRMKTLISDILDFSK--TG--VIEQKEVNLNSLLDTIFDNYRNDINQNNL---VLS 914

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIP 731
               L     D    +Q+F+ ++ NA+ + SKG+   V +    D  +++F+V +NG  I 
Sbjct: 915  KSNLPVLTGDTTSFIQLFTNLIDNAIKYQSKGNRAQVDIYGEEDEKNWVFTVADNGIGIK 974

Query: 732  EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +    VF  F       +  G G+GL+  +  ++ +GG +   ++    T     IP 
Sbjct: 975  REHQDRVFEVFKRLHSNSEYSGTGIGLATCKKIVSAYGGKIWFEANQSQGTKFVFTIPK 1033



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 139/419 (33%), Gaps = 53/419 (12%)

Query: 62  LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKF 121
           + EI D   KY S++   N  T  W+ +    E   +  + +     +   +S + W+  
Sbjct: 408 IQEIVDARRKYKSVIEGTNVGTWEWNVQTGETEFNERWAEIVGYTLDELAPISIDTWMNL 467

Query: 122 HHYIKLSKATEKLRKEGQS------FDLVAETQNDCAIKIEGRVSGSCAFLRILS----- 170
            H   L ++  +L +  +       F+   + ++   + +  R      F          
Sbjct: 468 AHPDDLEESGRRLNECFEKKAEYYDFEARMKHKDGHWVWVLDR---GKVFEWTKEGKPLM 524

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT---- 226
           + G + +++E   K + L      F+  F++    +   DQ G  L  N +  +      
Sbjct: 525 MYGTHQDISERKQKEEALRISEEAFRGNFENAAIGMALLDQNGKWLKVNKNVCQTVGYSK 584

Query: 227 -ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK----SYKIVR 281
            E   + FQ            ++ + ++     ++N  +      H           +  
Sbjct: 585 EELLELTFQDITHPDDLHADLDLLQELVEG---KRNHYQMEKRYFHKEGHIVYIILAVSM 641

Query: 282 VLNSFGEAGI----AIDVSKEITVNDQLTHTY---EILHNLTVAIAI--FDQNRYLQFHN 332
           V +  G         ID+SK      +L       + L + T  +A    D+   +   N
Sbjct: 642 VKDERGNVLYFISQIIDISKLKKTEIRLKALLAENKALMDATTEVAFVSTDKEGNILDTN 701

Query: 333 RSFVELWEIDLAFLATNP-----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
                +   D A +  +        +E    +          N+ T  + + S+  + + 
Sbjct: 702 IGVQRILGYDKASITGSSIQNILFLEEEWNQIARELMGSSTKNYST-ADFLHSLANNKQH 760

Query: 388 HKDTWHL--PNGQTLHV------IVTSNPRGGTIWMFENL----TVQVDLETKYNTLVK 434
           +   W +   +G  + V      I+      G ++   ++    ++Q +LE K   L +
Sbjct: 761 NLGEWTMKGKDGIIVPVLLSVSEIIQDKNTDGYLFAATDISQIKSIQKELEQKNEELEQ 819


>gi|291541287|emb|CBL14398.1| EDD domain protein, DegV family [Roseburia intestinalis XB6B4]
          Length = 891

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 132/279 (47%), Gaps = 11/279 (3%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +  D ++   I        M   + +++  R E    +         +  + F+ ++S+E
Sbjct: 159 VYGDIIVSAVITIFLTCAFMFIQITLSEYQRKENEKQQAELVAAMNTQ--SRFLANMSHE 216

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIG  ++    +  +L+    +    I ++S +LL+L+NDILDL+ ++AG M+
Sbjct: 217 IRTPINTIIGLNEMTLREE--NLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKME 274

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNA 698
           +  +     +L +E+  +   + HE N+   V    KL S    D  R+ Q+ + ILSNA
Sbjct: 275 VVPARYETGELFSEIVNTTWIRAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNA 334

Query: 699 MDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + ++ KGS  +   +   G        +V + G  I +D  K +F+ F        +   
Sbjct: 335 IKYTQKGSVTLFVESEQTGADEILLKMAVIDTGMGIRQDDMKYLFDSFKRVNEGSTKGIE 394

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGLSI    +NL GG +++ S  +  +T    IP K
Sbjct: 395 GTGLGLSICSQLVNLMGGQITVDSIYQKGSTFTITIPQK 433


>gi|240145207|ref|ZP_04743808.1| sensory box sensor histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
 gi|257202724|gb|EEV01009.1| sensory box sensor histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
          Length = 891

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 132/279 (47%), Gaps = 11/279 (3%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           +  D ++   I        M   + +++  R E    +         +  + F+ ++S+E
Sbjct: 159 VYGDIIVSAVITIFLTCAFMFIQITLSEYQRKENEKQQAELVAAMNTQ--SRFLANMSHE 216

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIG  ++    +  +L+    +    I ++S +LL+L+NDILDL+ ++AG M+
Sbjct: 217 IRTPINTIIGLNEMTLREE--NLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKME 274

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNA 698
           +  +     +L +E+  +   + HE N+   V    KL S    D  R+ Q+ + ILSNA
Sbjct: 275 VVPARYETGELFSEIVNTTWIRAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNA 334

Query: 699 MDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + ++ KGS  +   +   G        +V + G  I +D  K +F+ F        +   
Sbjct: 335 IKYTQKGSVTLFVESEQTGADEILLKMAVIDTGMGIRQDDMKYLFDSFKRVNEGSTKGIE 394

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G GLGLSI    +NL GG +++ S  +  +T    IP K
Sbjct: 395 GTGLGLSICSQLVNLMGGQITVDSIYQKGSTFTITIPQK 433


>gi|149911169|ref|ZP_01899794.1| putative two-component sensor [Moritella sp. PE36]
 gi|149805770|gb|EDM65767.1| putative two-component sensor [Moritella sp. PE36]
          Length = 544

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 116/246 (47%), Gaps = 10/246 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L  +   L +++++K+ F+  +S+E+R+P+  I+G   LLK +    LN++Q + ++ 
Sbjct: 155 RKLQNEKAILEESNKLKSLFLATISHEIRTPMNGILGIVQLLKDT---PLNNQQVEMLDT 211

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+  S  L+ ++NDILD + ++ G + LN     + + + +V +  +   H   + I   
Sbjct: 212 ITNRSDDLITILNDILDYSQLETGKVALNEVDFNVIESVEDVVKRFSAAAHLKGLSITTA 271

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVKNNG 727
            D         D +R+ QI S ++ NA+ F+  G   +I+        F      VK+ G
Sbjct: 272 FDNSTPVIFKGDVERIKQILSNLVHNAVKFTQVGEINIIVNFEETATSFYQVNIIVKDTG 331

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +   K++F  F    +       G GLGL+I  +      G +S+ S +   T   
Sbjct: 332 IGISKIAQKNLFQPFTQADNSMSRTFGGTGLGLAISANLTKAMNGTISVESEELKGTAFL 391

Query: 786 CRIPSK 791
             IP K
Sbjct: 392 LSIPLK 397


>gi|329925071|ref|ZP_08280015.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
 gi|328940190|gb|EGG36522.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
          Length = 459

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 114/245 (46%), Gaps = 6/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +     ++  + L + ++++  FV +VS+E++SPL +I GF+  L+T +L     +Q
Sbjct: 217 ELGQLADHFSQMAKGLAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLS--EEQQ 274

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I A S  +  L   +L LA++D     L+ ST  + + + +V           +
Sbjct: 275 QHYLSIIEAESRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVLFHTEWSWRSKD 334

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + I +           D+Q L Q+++ +++N++ F+     + L+    N      + + 
Sbjct: 335 LTIDMSLPPT--YVYGDQQLLHQVWTNLITNSIKFTVPEGAISLRVIEHNTQCRIEISDT 392

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +    +FNRF        R     GLGLSI +  + LHGG + ++S     TT 
Sbjct: 393 GIGIPPEHLPHIFNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTF 452

Query: 785 NCRIP 789
              +P
Sbjct: 453 TVILP 457


>gi|317052639|ref|YP_004113755.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947723|gb|ADU67199.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 970

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 145/375 (38%), Gaps = 32/375 (8%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPD---GRIKLSNPAFRSLWKTE------ENRLSPGTH 479
            +   + Q   +     G+ ++  D   G +      F     T       +       H
Sbjct: 355 LSRDEQRQRLFLATSGVGIGIWDYDMSAGTMTWDEQMFALYGATPGEEADAQRIWESRVH 414

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQ 537
             ++ +     ++   G   F+A             G +  +  +  VL          +
Sbjct: 415 PDDLESVNQLLHSALQGESFFSAEFRIVLP-----DGNIRWIKANAVVLRADGDGGEPLR 469

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T  ++++  R E               +K+ FV  VS+ELR+PLT+I G   L+   
Sbjct: 470 VIGTNWDISEQKRVEL--------------MKSQFVSTVSHELRTPLTSINGSLGLIAGG 515

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +G L S+  Q V+    +S  L  L+ND+LD+  + AG M+ +     L  ++ +  ++
Sbjct: 516 AVGELPSQARQLVDIAYKNSQRLGYLINDLLDMEKIAAGKMRFDMILQELMPIVEQAMEA 575

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                 + N+   ++          D QRL+Q+ S +LSNA  FS+    V +     N 
Sbjct: 576 NEAYGRQFNVTFALVERDDSMLVRVDAQRLMQVLSNLLSNAAKFSASAERVEIAVMAQNN 635

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
                V++ G  I  ++   +F +F         Q+ G GLGL+I +  +   GG + + 
Sbjct: 636 QVRVEVRDQGPGISPELQARLFTKFTQADSSDTRQKGGTGLGLAIAKELVERMGGTIGVH 695

Query: 776 SSDEGVTTINCRIPS 790
           S     +     +P+
Sbjct: 696 SEVGRGSVFFFELPA 710


>gi|225681940|gb|EEH20224.1| ethylene receptor [Paracoccidioides brasiliensis Pb03]
          Length = 2254

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 14/248 (5%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            AE       +    A + K+ F+ +VS++LR+P+  +IG T+LLK +   SL+ +Q+ YV
Sbjct: 1725 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELLKKT---SLDREQNGYV 1781

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I   +  LL L+NDILD + ++AG MK+    + L D + E  +++        ++  
Sbjct: 1782 DSIRVCADTLLTLINDILDFSKLEAGKMKVTAIPLNLRDTILEAVRALCYTHRHRGLQTI 1841

Query: 671  VISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIFS--V 723
               D    +   + D  RL QIF  +LSN+  F+ +GS V + A     ++G    +  V
Sbjct: 1842 EDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGS-VTVNAKSSVEEDGRIRITCKV 1900

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  IP +    +F  F        R   G GLGLSI ++ I  + GG + + S +  
Sbjct: 1901 VDTGIGIPGEQLVRLFRPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEEGV 1960

Query: 781  VTTINCRI 788
             TT+   +
Sbjct: 1961 GTTVTFSL 1968


>gi|160936663|ref|ZP_02084030.1| hypothetical protein CLOBOL_01554 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440454|gb|EDP18199.1| hypothetical protein CLOBOL_01554 [Clostridium bolteae ATCC
           BAA-613]
          Length = 970

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 125/276 (45%), Gaps = 10/276 (3%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                 +IP    Q +  F   T        L +  +  + +++ + +F   +S+++R+P
Sbjct: 407 RWFAVHMIPADYGQYLAVFQETTKEHNMREHLADALKQAQNSNQARTAFFSSMSHDIRTP 466

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  IIG T++   S       K    +  I+A+S  LL L+N++LD++ +++G + L   
Sbjct: 467 MNGIIGMTNVALNSLDNM--EKVESCLNKITAASGHLLQLINEVLDMSRIESGKISLKEE 524

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFS 702
            + L  ++  +   I   M +     ++ S   +  + ++D   L +I   +LSNAM ++
Sbjct: 525 NVHLPSMMANLISFIRPDMDKKRQSFELKSQILEHDTVISDGLHLQKILLNLLSNAMKYT 584

Query: 703 SKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
             G T+ ++    N D       F V++NG  +  +  + VF  F         Q  G G
Sbjct: 585 QAGGTISMQITETNVDADTIRLRFVVEDNGIGMTPEFLERVFAPFERAEDSRMSQATGTG 644

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGL+I +S +++  G + + S  +  +     +P K
Sbjct: 645 LGLAITKSIVDMMEGDIYVESEKDMGSRFTVELPLK 680


>gi|310643960|ref|YP_003948718.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309248910|gb|ADO58477.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1238

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/410 (22%), Positives = 182/410 (44%), Gaps = 30/410 (7%)

Query: 403 IVTSNPRGGTIW--MFENL---TVQVDLETKYNTLV-KVQGETIDHLSEGVAVFGPDGRI 456
           +  S P G  I+  +FE+     V++    +++ L  K+  + ++ L  G+ +    GR+
Sbjct: 378 LGESKPVGIMIFPILFEDECIGAVEIASLDRFSDLETKLFAQLMESL--GIILNNIRGRM 435

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++     + L +++            +          ++  +     +   ++  +  Q 
Sbjct: 436 RVE----QLLRESQALTEELQCQSEELQTQQEELKRSNENLEQQTEELKRSEELLQRQQE 491

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            LE  +  ++  +       Q         +  RA   L ++   L    + K+ F+ ++
Sbjct: 492 ELEHFNTELI--AKTRALEEQVREVEEKNDEIERARAQLEQQAMQLGITSKYKSEFLANM 549

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +++  + LL  +K G+L  KQ +Y + I  S   LL ++++ILDL+ VDAG
Sbjct: 550 SHELRTPLNSLLILSQLLSENKEGNLKPKQVEYAQTIYMSGADLLKMIDEILDLSKVDAG 609

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695
            M +N+ T+ L +L   V+Q+ A    +  +++    +  L  + ++D  RL QI   +L
Sbjct: 610 KMDINHETVHLEELELFVEQNFAPVAAKRELQLHTEIEENLPDAIISDGYRLKQILRNLL 669

Query: 696 SNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPEDMCKSVFNRFV 743
           SNA  F+++GS +  K +R NG+               SV++ G  I  D    +F  F 
Sbjct: 670 SNAFKFTTEGS-IRFKVSRANGEQLPDMLDSRKSYLALSVRDTGIGIASDKTDLIFEAFQ 728

Query: 744 SNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   +  G GLGLSI      L GG +++ S     +     +P +
Sbjct: 729 QVDGTTSRKYGGTGLGLSISRELSKLLGGAITVESEQGQGSCFTLYLPEQ 778


>gi|268317404|ref|YP_003291123.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334938|gb|ACY48735.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1074

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 124/276 (44%), Gaps = 8/276 (2%)

Query: 518  LELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQH 575
            + L++  VL +   +    A  M     + D + A R  +      LR+A+  K + +  
Sbjct: 783  ITLVTIVVLTWRHYVAQQRAIQMYIATVLGDRIEAMRSRIKLLTRLLREANAAKETILST 842

Query: 576  VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
             ++ELR+PL+ I+GF  ++K      L     +++E+I  S   LL  +NDILDLA + +
Sbjct: 843  TTHELRTPLSAILGFASVIKEETDNPL---HKEFLEHIEESGHRLLATINDILDLARLRS 899

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
            G M +    + + + + +V + +     +  +  ++    +      D   + ++ + ++
Sbjct: 900  GSMVVRRVPVEVTETVQKVYKLLEPLARKKGLDFRMELPPEPLRVFGDPSAVERVLTNLV 959

Query: 696  SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
             NA+ F+ +G  V +    D      +V++ G  I E+    +F+ F   +    R   G
Sbjct: 960  GNAIKFTPEGEVV-ISVTADEKHVRIAVRDTGVGISEEFLPHIFDEFRQESSGADREFEG 1018

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             GLGL+I    + L  G + + +     +T    +P
Sbjct: 1019 SGLGLAIASRLVKLMEGEIEVVTEKGKGSTFTVVLP 1054


>gi|229113506|ref|ZP_04242955.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
 gi|228669924|gb|EEL25318.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
          Length = 387

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      ++ +  + L    + +  F+  V++ELR+PLT I G+ D++  +K+ + +  Q
Sbjct: 145 EVGELAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQD--Q 202

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I   +  +  LV D+ +LA ++     +N     L DLL  +   I     E N
Sbjct: 203 KHYLSIIKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKN 262

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I I       L   + D QR  Q+   +L+NA   S   S + +            VK+ 
Sbjct: 263 IHIIFSCPEDLVLLL-DEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDE 321

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE     +F RF        R   G GLGL+IV+  I LH G +S+ S     T  
Sbjct: 322 GEGIPEKDLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIF 381

Query: 785 NCRI 788
              +
Sbjct: 382 TILL 385


>gi|153831016|ref|ZP_01983683.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|148873508|gb|EDL71643.1| sensor histidine kinase [Vibrio cholerae 623-39]
          Length = 554

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 168/414 (40%), Gaps = 33/414 (7%)

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 3   LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 62

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
            +  L++     +  G  I ++    ++       D  D     +   + +  S   +  
Sbjct: 63  RYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLE-QGTSHTSSRV 121

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                V+E    P+P    +++F ++T    AE++L   NE L +               
Sbjct: 122 RADGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKMANETLEERVLQRTLELEKLNKQ 181

Query: 566 -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                       + K+ F+  VS++L  PL     F   L      +   K + ++E   
Sbjct: 182 LVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESAL 241

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++    +L++D+LD++ +++G + L+  +  + D+L+ +    +    +  ++  ++  
Sbjct: 242 GAAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALAAKQGVQFSMV-- 296

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D 
Sbjct: 297 PSSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVATGQVRIDVWDNGIGIEQDK 356

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F         +G+GLGL+I +   ++ G H+S+ S     +  +  +
Sbjct: 357 QQEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPGQGSVFSITL 410



 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 23  VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 82

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +   +H  +    +G+ + V     P GG +
Sbjct: 83  DVIRHNAQQGLCG-PGDPEDHVRRRVYHLEQGTSHTSSRVRADGRVIEVQGNPMPGGGFV 141

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 142 MSFTDITVFREAEQSLKMANETLEE 166


>gi|262381814|ref|ZP_06074952.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301310286|ref|ZP_07216225.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|262296991|gb|EEY84921.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831860|gb|EFK62491.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 364

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 128/237 (54%), Gaps = 7/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ E+     K++ +K+SF+ ++S+E+R PL  I+GF+ LL   + G L   + +Y+  
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++ +LL +VND+LDLA +++G M  ++    L  L+ E   S   K+    + +   
Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVP-RGVALTYP 242

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                    +DR RL Q+    ++NA+ ++S GS +IL       + + SV + G  + E
Sbjct: 243 ESLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGS-IILSYQAMENEVLLSVTDTGEGMSE 301

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   VF+RF     R Q++G+GLGLSI ++ I   GG + +SS     +   C +P
Sbjct: 302 EIKLHVFDRFYKG--RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|318607055|emb|CBY28553.1| bara sensory histidine kinase (= VarS = GacS) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 847

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHV 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G 
Sbjct: 394 NKDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S  E  +T   
Sbjct: 454 GISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGSTFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|322418244|ref|YP_004197467.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124631|gb|ADW12191.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 732

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L         A   K+ F+ ++S+E+R+P+  +IG   LL  +    L+  QS Y+E +
Sbjct: 200 ELEHALVQAEAATAAKSVFLANMSHEIRTPMNGVIGLARLLMET---PLDKVQSNYLESL 256

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S  +  LL ++N+ILD++ V+AG++ L      L   L+   Q    +  E  +++ + +
Sbjct: 257 SDCAESLLTIINEILDISKVEAGMITLEKIVFDLRRFLDRSLQPFMLRGQEKGVQVLLEA 316

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGS 728
              L    V D  R+ Q+   ++ NA+ F+ +G+  +    ++    +     +V + G 
Sbjct: 317 SPDLPQLLVGDPVRIGQVLGNLIGNALKFTQRGTITVSCRLIEMKEGDVLLRLAVADTGI 376

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I       +F +F        R   G GLGLSI  S + L GG + + S     +  + 
Sbjct: 377 GIAPQALDVIFEKFSQADSSTTRLYGGTGLGLSISRSLVELMGGALGVESRLGEGSVFSF 436

Query: 787 RI 788
            +
Sbjct: 437 TL 438


>gi|330916933|ref|XP_003297614.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1]
 gi|311329607|gb|EFQ94291.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1]
          Length = 2379

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
              K+ F+ +VS+ELR+PL  +IG ++LLK S    LN +Q+ Y + I   +  LL+++ND
Sbjct: 1888 RAKSLFLANVSHELRTPLNGVIGMSELLKAS---PLNGEQTGYADSIRVCADTLLSIIND 1944

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQ 685
            +LD + ++AG M +    I LN+ + EV +++A    E  ++     +       +AD  
Sbjct: 1945 LLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELNPEMLVMADPV 2004

Query: 686  RLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNR 741
            RL QI   +LSN+  F+ +GS TV     R+  D++    SV + G  IP++  + +F  
Sbjct: 2005 RLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGIPDEQKQKLFLP 2064

Query: 742  FVS--NAHRGQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTTINCRI 788
            F    ++      G GLGLSI ++ I  +  G V + S     TT+   +
Sbjct: 2065 FSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTVTFSL 2114


>gi|291534447|emb|CBL07559.1| EDD domain protein, DegV family [Roseburia intestinalis M50/1]
          Length = 891

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 131/276 (47%), Gaps = 11/276 (3%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D ++   I        M   + +++  R E    +         +  + F+ ++S+E+R+
Sbjct: 162 DIIVSAVITIFMTCAFMFIQITLSEYQRKENEKQQAELVAAMNTQ--SRFLANMSHEIRT 219

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  IIG  ++    +  +L+    +    I ++S +LL+L+NDILDL+ ++AG M++  
Sbjct: 220 PINTIIGLNEMTLREE--NLSDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVP 277

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDF 701
           +     +L +E+  +   + HE N+   V    KL S    D  R+ Q+ + ILSNA+ +
Sbjct: 278 ARYETGELFSEIVNTTWIRAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKY 337

Query: 702 SSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           + KGS  +   +   G        +V + G  I +D  K +F+ F        +   G G
Sbjct: 338 TQKGSVTLFVESEQTGADEILLKMAVIDTGMGIRQDDMKYLFDSFKRVNEGSTKGIEGTG 397

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           LGLSI    +NL GG +++ S  +  +T    IP K
Sbjct: 398 LGLSICSQLVNLMGGQITVDSIYQKGSTFTITIPQK 433


>gi|163814660|ref|ZP_02206049.1| hypothetical protein COPEUT_00811 [Coprococcus eutactus ATCC 27759]
 gi|158450295|gb|EDP27290.1| hypothetical protein COPEUT_00811 [Coprococcus eutactus ATCC 27759]
          Length = 623

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 10/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +++R L E  +   KA+  K  F+  +S+++R+P+  IIGFTDLL  +       K   Y
Sbjct: 231 KSKRELEEALDMANKANSAKTVFLNSMSHDIRTPMNAIIGFTDLLGENLGD--EKKARDY 288

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I +SS  LL+L+N++L++A +++G   L+   I +   L+ V      +M E +I  
Sbjct: 289 IGKIKSSSDYLLSLINNVLEMARIESGRSDLDERDISVEKSLDAVYWIFEAQMKEKHIDF 348

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIF--SV 723
               + K  +   D  +L +I   I++NA  +S  G +V ++        +G      +V
Sbjct: 349 IWDVNVKHNNIKCDVVKLKEILMNIINNAYKYSLPGDSVAVRIEEIPCDRDGYARIQTTV 408

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           K+ G  + E+  + +F  F       +    G GLG++IV+  ++L GG + + S     
Sbjct: 409 KDTGIGMSEEFLEHIFEDFTRAQTSTESGQFGTGLGMAIVKKIVDLMGGTIDVQSKQGVG 468

Query: 782 TTINCRI 788
           TT    +
Sbjct: 469 TTFTVTL 475


>gi|1679757|gb|AAB19216.1| two-component histidine kinase CHK-1 [Glomerella cingulata]
 gi|1679760|gb|AAB19217.1| two-component histidine kinase CHK-1 [Colletotrichum
           gloeosporioides]
          Length = 745

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 118/245 (48%), Gaps = 19/245 (7%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L++A E K+ F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  LL
Sbjct: 104 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLL 160

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  I +  + ++V
Sbjct: 161 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWV 220

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST---------VILKAARDNGDFIFSVKNNGSSIP 731
             D+ R+ Q+   ++ NA+ F+++G                + D     F+V + G    
Sbjct: 221 KGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRIFTNTKSALSNDEIMLEFAVIDTGRGFT 280

Query: 732 EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR-- 787
           ++    +F  F     +   Q  G GLGL I    + LHGG +  ++     +T      
Sbjct: 281 KEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAVPGKGSTFTFTAK 340

Query: 788 --IPS 790
             +P+
Sbjct: 341 FALPT 345


>gi|327539007|gb|EGF25641.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 860

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 104/572 (18%), Positives = 206/572 (36%), Gaps = 71/572 (12%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHG--NNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
             +++ M   S        +   +  G     S+ I+ +L   G   IA++ +  +  + 
Sbjct: 28  SRVRRAMPPPSTTHPETSTSPEAIGSGLRTRLSFCILVLLLIGGF--IAVETADRVQRSR 85

Query: 304 QLTHTYEI-------LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
                + I       L  L  A    + +      +  ++ + E    +L+ NP   ++ 
Sbjct: 86  MRQQVFGIAPTYAAELQQLGHA----NIDEQTSTDDPQYLRMIEAQKRWLSVNPQVTDIY 141

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
              R              +EN            +T +  +G+   V  +    G    +F
Sbjct: 142 TMRRVTELDLSTRPLPD-RENNNGHLYKIIVDSETDYSGDGRIEGVRESRTEIGE---IF 197

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            + +V+  +E  +                        G    +N   R  W    +  +P
Sbjct: 198 SDSSVE-QIEQAFR-----------------------GVTTFANQPSRDRWGKWVSAYAP 233

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                 +         +    +   +II +       +   + L   +V    ++     
Sbjct: 234 LFDADGMVEAL--VGVDFPAENYIHSIILTRLGAMGIIAALITLFLGAVTSIGML----K 287

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEI-KNSFVQHVSYELRSPLTNIIGFTDLLK 595
             ++        ++ +R L  +  A  +   I KN F+ ++S+E+R+P+  I+G  +L+ 
Sbjct: 288 AGIVAQQRSHALLQDQRDLATQAAAQARQAAIIKNQFLANMSHEIRTPMHGILGTAELMT 347

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S   SL+ +Q  Y+  I  S+  LL ++NDILD + VD+G M L      L DLL++  
Sbjct: 348 RS---SLDEQQRHYMYMIQTSAKGLLTVLNDILDFSKVDSGQMTLESVPFELKDLLSQTM 404

Query: 656 QSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            ++   +    + ++     G     V D  RL Q+   ++ NA+ F+ +G  V +    
Sbjct: 405 HAV-VNLKNEEVDLQFQPPVGVPEIIVGDPTRLRQVLINLVGNALKFTEQG-RVTVTVEN 462

Query: 715 D-------------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
           +                  F++ + G  + +     +F  F        RR  G GLGLS
Sbjct: 463 ETRDATTLDTSDSKGSRIAFTITDTGIGMTQQQQAKIFEAFTQGDSSTTRRFGGTGLGLS 522

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I    + L GG + +SS     ++    IP +
Sbjct: 523 ISSQLVELMGGRLQVSSVPNEGSSFRFDIPLR 554


>gi|261251233|ref|ZP_05943807.1| sensor protein TorS [Vibrio orientalis CIP 102891]
 gi|260938106|gb|EEX94094.1| sensor protein TorS [Vibrio orientalis CIP 102891]
          Length = 959

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 133/314 (42%), Gaps = 16/314 (5%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +A          +       +  S    ++ LQ   E L + V E         +T  
Sbjct: 391 DELAHMGQAIITARNTAHALKVVAESEAKAKRELQEHKEHLEELVTE---------RTHQ 441

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                                  +A   K++F+  +S+E+R+P+  ++G   LLK     
Sbjct: 442 LQNANVRLNEEVENHARARSLAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKD---A 498

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L+SKQ  YV+ I+ S T LL ++ND+LD + ++AG +++      L  ++++ K  +  
Sbjct: 499 GLDSKQGYYVDVINRSGTTLLAILNDVLDYSKIEAGHLEIRPIDFNLYSMVDDTKHLLDG 558

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD-NG 717
           +  E ++ +    +  +  F   D  R+ Q+ + ++ NA+ F+ +G   + +    D +G
Sbjct: 559 RAKEKSLELACTIESDVDKFWRGDVTRISQVLNNLVGNAIKFTDRGYVDIYVSLDPDLDG 618

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISS 776
           + +F V ++G  I E    ++F+ F         + G GLGL+I +  +    G + + S
Sbjct: 619 NVLFEVSDSGVGISEQEQVTLFDAFTQATGGLSSKGGTGLGLAISKRIVEAMNGKLLVES 678

Query: 777 SDEGVTTINCRIPS 790
                +     IP 
Sbjct: 679 HVGEGSRFWFSIPL 692


>gi|71735914|ref|YP_273056.1| response regulator/sensor histidine kinase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556467|gb|AAZ35678.1| response regulator/sensor histidine kinase [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 762

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 154/345 (44%), Gaps = 21/345 (6%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA--AIITSFDDERKSLQGTL 518
           P F  L    E  L  G +I+N+ A  +  ++     DL A  A + +  +  + L+   
Sbjct: 66  PVFSYLAGPIEELL--GQNIKNVLADSTLLFDTVLPEDLTALMANMDAKSESEQPLRAFF 123

Query: 519 ELLS-DSVLEYSIIPLPN---AQTMLTFVNVTDSVRAERA---LTEKNEALRKADEIKNS 571
              +    +   I  +P      +++      D   A      L++  +A  +A   K+ 
Sbjct: 124 RCRTMGREMHIRIDAVPEKTSGGSIIWKGVWVDVTEAREKSLKLSQAKDAAEEAAHAKSQ 183

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+P+  I+G  +LL +    S++  Q Q +  I  S+  L+ ++ND+LDL+
Sbjct: 184 FLATMSHEIRTPMNGILGLLELLHSK---SMSPDQQQIMLMIDESAKSLMTVLNDVLDLS 240

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQI 690
            ++   ++L+     L  L++ V   +A + H   +R+++     L  S   D  RL Q+
Sbjct: 241 KIEFNQLELHRQPTDLRALISSVVGIMAHQAHAKGLRVRITISPALASSVEVDDMRLRQV 300

Query: 691 FSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
              +LSNA+ F++ G+  + +   R +        SV + G  + +   + +F  F    
Sbjct: 301 LLNLLSNAIKFTAVGTVSIKVAVTRSSDTTQHLAISVIDTGLGMSDSQRERIFEPFTQGD 360

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                   G GLGL I +  I L GG +++ + +   T +   +P
Sbjct: 361 ASITRSYGGSGLGLVISQHLIRLMGGELALETEEHVGTNVTVVLP 405


>gi|209547989|ref|YP_002279906.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
 gi|209533745|gb|ACI53680.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
          Length = 1296

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 105/507 (20%), Positives = 202/507 (39%), Gaps = 40/507 (7%)

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
             +  L VA+ I   +  L   N  F+ L                 L+ LR    +   L 
Sbjct: 799  TVDQLPVAVLIHVGDA-LLHANPEFMRLTGYTS------------LDALREVGGIEALLQ 845

Query: 371  WKTWKENIFSVYK-------------SSETHKDTWHLPNGQTLHVIVTSNPRGGT--IWM 415
             +  +E                    ++      W   N   L ++       G      
Sbjct: 846  RRELEEKAAGSGTMMLVKADDSLVPVTARLQSVRWEDANALMLALMPVEGKEEGRSDAGR 905

Query: 416  FENLTV---QVDLET--KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             E  T    +  +E   K    V+     ++  ++GV V G +G I+  N +  +L+  +
Sbjct: 906  SEGRTEARPERMVEKVAKLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYD 965

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            E   + G     + A  S+         L    + S  ++ + + G         L  ++
Sbjct: 966  EQE-TRGKPFVMLFAHESQKAVLDYLHGLSGHGVASVLNDGREVIGREAAGGFVPLFMTM 1024

Query: 531  IPLPNAQTML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
              L ++        ++T   R E  L     A   A+  K  F+  VS+E+R+PL  IIG
Sbjct: 1025 GQLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIG 1084

Query: 590  FTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            F+D++   + G + + +  +Y   I  S   +L++VND+LD++ ++AG M L+++ + LN
Sbjct: 1085 FSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLN 1144

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            + ++E    +  + +   + I+      +   VAD + + QI   ILSNA+ F+  G  +
Sbjct: 1145 EAVSEAVALVQPQANGQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQI 1204

Query: 709  ILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESF 764
            ++  + + NG  +  V++ G  +           F   +    R    G GLGL + ++ 
Sbjct: 1205 VVSTSYEANGSVVLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAM 1264

Query: 765  INLHGGHVSISSSDEGVTTINCRIPSK 791
            ++ +    SI+S+    T +    PS+
Sbjct: 1265 VDANRAVFSINSAPNEGTLVEITFPSQ 1291



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 67/274 (24%), Gaps = 56/274 (20%)

Query: 197  VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
               D L   V        +L AN  + + T    +   + +G    L +    +   + S
Sbjct: 798  GTVDQLPVAVLIHVGDA-LLHANPEFMRLTGYTSLDALREVGGIEALLQRRELEEKAAGS 856

Query: 257  ALEKNFCETVSTLEHGNN----KS----------YKIVRVLNSFGEAGIAIDVSKE---- 298
                      S +         +             +        +AG +   ++     
Sbjct: 857  GTMMLVKADDSLVPVTARLQSVRWEDANALMLALMPVEGKEEGRSDAGRSEGRTEARPER 916

Query: 299  -----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
                   +  ++     IL   T  + +      ++  NRS   L+  D       P   
Sbjct: 917  MVEKVAKLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKPF-- 974

Query: 354  ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--- 410
             ++ F   + K             +         H     L +G+   VI      G   
Sbjct: 975  -VMLFAHESQK------------AVLDYLHGLSGHGVASVLNDGR--EVIGREAAGGFVP 1019

Query: 411  ------------GTIWMFENLTVQVDLETKYNTL 432
                        G   +  ++T     E +    
Sbjct: 1020 LFMTMGQLTSSNGYCAVIRDITQWKRTEDELRNA 1053


>gi|115372873|ref|ZP_01460178.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818489|ref|YP_003950847.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370140|gb|EAU69070.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391561|gb|ADO69020.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 463

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 162/337 (48%), Gaps = 17/337 (5%)

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
               +E  R+  G  +  + A      +      L + +  +     + L+  + +   S
Sbjct: 113 RWEGSELGRVVFGPFVPEVVAALPERMDVVRAQGLGSPLAAAVAYFSQVLEALMAVGHRS 172

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            L  S I L +A  +   + V D+  A          LR+ D +++SF+  VS+ELR+PL
Sbjct: 173 WL-ASRIQLESAGEIRRELEVRDARMA-----SLQARLREMDRLQSSFLGTVSHELRTPL 226

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            +II +++LL     G LN +Q Q V+ I+     LL+L+  ILD++ ++AG ++L ++ 
Sbjct: 227 ASIIAYSELLSEGITGMLNPEQLQCVQSITEMGRTLLDLITSILDISQLEAGKLRLAFAP 286

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSS 703
           + + +++     S+  +     ++++V+    +    +AD+ RL Q+   +L+NA+ F+ 
Sbjct: 287 VDMAEVVVSAVSSVTPQSRRKGLKLEVVLPELRQPRVLADKGRLYQVLVNLLANALKFTP 346

Query: 704 KGSTVILKAARDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGV 754
           +G  V ++ +            + F V++ G  I +D  + +F  F        R   GV
Sbjct: 347 EGH-VRVRLSEVGPQEELGTLGYRFCVEDTGVGIRQDQLERIFQTFYQVDSSSTREFGGV 405

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLGLSIV+ F+  HGG V ++S     +     +PS+
Sbjct: 406 GLGLSIVKRFVEGHGGKVLVTSQPGQGSCFTAVLPSR 442


>gi|13591555|dbj|BAB40947.1| histidine kinase [Magnaporthe grisea]
          Length = 1307

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 158/381 (41%), Gaps = 26/381 (6%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ ++D+E K   L  +  ETI+++ + +++F  + +    +     +   + +     
Sbjct: 587 DMSRKIDVEAKGEIL--ILKETINNMVDRLSIFCNEVQRVAKDVGVDGIMGGQADVAGLK 644

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              + I    +   N     +L A +    D    +  G    L    +E       +  
Sbjct: 645 GRWKEITTDVNTMAN-----NLTAQVRAFGDITNAATDGDFTKL----VEVEASGEMDEL 695

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                  V +   + +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +
Sbjct: 696 KRKINQMVYNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT 755

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L   Q + +  ++  +  LL +++DILDL+ ++A  M +      L   +    ++
Sbjct: 756 ---DLTQYQREMLNIVNNLAMSLLTIIDDILDLSKIEAKRMVIEEIPYTLRGTVFNALKT 812

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           +A K ++  + +    D  +    + D  RL QI   ++ NA+ F+  G  V L   + N
Sbjct: 813 LAVKANDKFLDLTYRVDSSVPDHVIGDSFRLRQIILNLVGNAIKFTEHGE-VSLTIQKGN 871

Query: 717 G--------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
                       F V + G  IP D    +F+ F        R   G GLGLSI +  +N
Sbjct: 872 DVTCLPNEYMIEFVVSDTGIGIPTDKLGLIFDTFQQADGSMTRKFGGTGLGLSISKRLVN 931

Query: 767 LHGGHVSISSSDEGVTTINCR 787
           L GG V + S     ++    
Sbjct: 932 LMGGDVWVKSQYGKGSSFYFT 952


>gi|302058747|ref|ZP_07250288.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato K40]
 gi|302131708|ref|ZP_07257698.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 1202

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 177/465 (38%), Gaps = 21/465 (4%)

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                 +   +  ELL  L   NK  E+      +        SS      W        
Sbjct: 475 WSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSSLPQPSLWGRIPPWVF 531

Query: 401 HVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            V+  +   G     +       +  ++  E + N  +  +   +D +   + V    GR
Sbjct: 532 WVVALALLTGLVSLAWSSRLKVQIRQRLKAECQLNDQLAFKHALLDGIPNPIYVRDLKGR 591

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---FDDERK 512
           +   N ++         +++    +        R   E    D  A +      F D   
Sbjct: 592 LISCNRSYEQSLGVSFEQMNGRRLLD--VEVIPRPLAEQMHADYLALLENHQPVFSDRTI 649

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            L G    +    + +          +  ++++T+    E+ L +      +A+E K+ F
Sbjct: 650 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 709

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  IIG  +L     L    +  +Q ++    S+T L+ L+ + LDLA 
Sbjct: 710 LASMSHEIRTPMGAIIGLLELECEQALRRGEAP-TQGLQVAHRSATELVALIGESLDLAR 768

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIF 691
           ++AG M+L+     L      V    + +  E  + +++  ++   G +  D  RL Q+ 
Sbjct: 769 IEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQVV 828

Query: 692 SKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +L NA+ F+ +G+ V+ ++ + D  D       + ++G  I     + +F  F   A 
Sbjct: 829 HNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAAD 888

Query: 748 RG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGLSI    + L  G +S+ S     T +   +P 
Sbjct: 889 DTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPL 933



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +      +L++ ++    L D +   ++ RD  G ++  N SY++
Sbjct: 542 LVSLAWSSRLKVQIRQRLKAECQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQ 601

Query: 225 NT----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +     E         +    +   E++    ++     +      +    G   +    
Sbjct: 602 SLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTIELSGKRMNVWQW 661

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL     +      A ++F
Sbjct: 662 TVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 709


>gi|59714208|ref|YP_206983.1| two-component hybrid sensor histidine kinase [Vibrio fischeri
           ES114]
 gi|59482456|gb|AAW88095.1| two-component hybrid sensor histidine kinase [Vibrio fischeri
           ES114]
          Length = 766

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +       A++ K+ F+  +S+E+R+P+  ++G   +LK +   +L   Q + V  
Sbjct: 225 QDLQQARNEAEAANKSKSRFLASMSHEIRTPMNAVLGLLAILKDT---TLKPNQKELVNT 281

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-V 671
            + SS +LL+++NDILD + ++A    L      ++  LN V ++   +     + +   
Sbjct: 282 ATDSSELLLSIINDILDFSRMEANTFYLENHIFNIHKSLNSVLKTFHPQAQNKQLELSLF 341

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF--SVKNNGS 728
           I+D        D  RL QI   ++ N++ F+  G   +++ A    G      SV+++G 
Sbjct: 342 IADNVPTYVQGDAHRLRQILLNLVGNSLKFTDDGQVQILVNAEEHEGRIQLHCSVQDSGI 401

Query: 729 SIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ++  + +F+ F    N+      G GLGL+I +  +++  G ++++S     +  + 
Sbjct: 402 GIQQEQLEYLFDEFTMADNSFSRTHEGSGLGLAICQRLVHMMDGTITVNSQYGLGSEFSF 461

Query: 787 RI 788
            I
Sbjct: 462 NI 463


>gi|172057001|ref|YP_001813461.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989522|gb|ACB60444.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 856

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 152/374 (40%), Gaps = 18/374 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++ +  +     +   + +  + E V     D +I  + P          ++ + G    
Sbjct: 480 RMRVFDEIEREREKTSKLLHSIREAVIYI-EDDKIFANKPLLALFHHPSHDQFNEGLMTL 538

Query: 482 NI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           ++     +   ++ + +  +   +   D   + L  +L      V           Q   
Sbjct: 539 DVKIEELAVQVDQHEAFLEYMNRVCRHDIPTEGLSLSLNKEERFV-----------QVYA 587

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +      R    +          D +K+ FV  VS+ELR+PL +I G+T+L+    L 
Sbjct: 588 EGIQYGGRFRGTMLVLRDVTIETGIDRMKSEFVSTVSHELRTPLASIFGYTELMLAKDLP 647

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q +Y+  I + +  L +LVND LD+  +++   +  +  + L +L+ EV +  A 
Sbjct: 648 V--DRQQRYLTTIHSETQRLTSLVNDFLDVQRMESSQQQYQFVKLDLRNLIQEVAEFHAG 705

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
               + + ++   D  L    AD  ++ Q+F  +++NA+ +S  G  + LK         
Sbjct: 706 STSHHQLTLET-GDRPLRWIEADEPKMRQLFGNLINNAIKYSPDGGEIELKLEELEDRLR 764

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             + + G  IP+     +F++F    +   R   G GLGL+I +  +  H G + + S++
Sbjct: 765 IQIIDEGIGIPQHALPELFSKFYRVDNSDSRKIGGTGLGLAICQEIVRAHDGLIHVESTE 824

Query: 779 EGVTTINCRIPSKE 792
              +     +P ++
Sbjct: 825 GSGSIFTIELPFEQ 838


>gi|37521385|ref|NP_924762.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212382|dbj|BAC89757.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 448

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 5/230 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ F+  +S+ELR+PL  IIG+T +LK   + +   KQ + +E I  ++ +   L+ 
Sbjct: 207 NRAKDEFLALLSHELRTPLNPIIGWTQMLKRGSVAA--DKQVEVLEIIERNAKLQNQLIQ 264

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD+A ++ G        ++L+ ++    +++ T   +  + ++V    +L   + D  
Sbjct: 265 DLLDVARIEQGKFSHRPQPVILSGVVQAAVEAVRTLAKDAGVALEVEVAERLPEVMVDPT 324

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+ Q+   +L+NA+ F+  G  V L            V ++G+ I       +F RF   
Sbjct: 325 RMQQVVWNLLTNAIKFTPSGGWVQLHLVEAADCLCLVVSDSGTGISPAFIPHLFERFRQA 384

Query: 746 AHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
              G RR  G+GLGL IV   + LHGG V   S            +P  E
Sbjct: 385 GDAGTRRQGGLGLGLFIVRYIVELHGGRVWAKSDGQGKGAVFTVELPLCE 434


>gi|325694847|gb|EGD36752.1| sensor histidine kinase VicK [Streptococcus sanguinis SK150]
 gi|327461011|gb|EGF07344.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1057]
          Length = 449

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 28/382 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I   N         + + +
Sbjct: 75  INDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I ++ +    Y    D  DL   +     D   S     E LS  V  ++++   
Sbjct: 135 QN-MSILDLLSISDEY----DLRDLITNVPELTID---SQDENGEYLSLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   ++            +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQDKE-----------ERERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +V+     +  ++ +V D+L L+ +D     L          +  +
Sbjct: 235 DEGALS--EPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSHLEVELTNFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +       I             D  +L Q+   I++NA+ +S  G T+ + 
Sbjct: 293 LNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQVIDNIMNNAIKYSPDGGTITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  H 
Sbjct: 353 IKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHQ 412

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +   S     +T    +P +
Sbjct: 413 GFIWAKSEYGVGSTFTIVLPYE 434


>gi|315918654|ref|ZP_07914894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313692529|gb|EFS29364.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1476

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 931  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 988

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 989  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1048

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1049 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1108

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1109 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1166


>gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 1476

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 931  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 988

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 989  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1048

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1049 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1108

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1109 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1166


>gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
            B-, and HSP90-like ATPase./Response regulator receiver
            domain./Two component regulator propeller./Bacterial
            regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
            domain. [Bacteroides xylanisolvens XB1A]
          Length = 1465

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 919  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 976

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 977  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1036

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1037 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1096

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1097 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1461

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 916  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 973

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 974  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1033

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1034 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1093

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1094 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1151


>gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
 gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
          Length = 1476

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 931  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 988

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 989  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1048

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1049 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1108

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1109 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1166


>gi|289675169|ref|ZP_06496059.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 500

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 156/370 (42%), Gaps = 9/370 (2%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATC 487
            N  +  +    D +   + V    GR+   N ++   L  + E          N+    
Sbjct: 46  LNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 105

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 +D   L       F D    L G    +    + +          +  ++++T+
Sbjct: 106 LAEQMHTDYLTLLENHQPVFSDRTIELPGKRMDVWQWTVPFFAADGQLQGLLGGWIDITE 165

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  + L+  +   L    S
Sbjct: 166 RKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLE-LECEQALRLGKIPS 224

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L + V +  + +  E  +
Sbjct: 225 QGLQVAHRSATELIALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQAGEKGV 284

Query: 668 RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD---FIFS 722
            +++   G+  G +  D  RL Q+   +L NA+ F+ +G+ V  L    D+ +       
Sbjct: 285 ELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPESTRVRIG 344

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           ++++G  I     + VF  F   +        G GLGLSI    + L  G +S+ S    
Sbjct: 345 IQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDISLHSEPGK 404

Query: 781 VTTINCRIPS 790
            T +   +P 
Sbjct: 405 GTLVTIDLPL 414



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +     ++L++ ++    LFD +   ++ RD  G ++  N SY++
Sbjct: 23  LVSLTWSSRLKVQIRQRQRVQRQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQ 82

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                 L    + ++M +         +      +    G        
Sbjct: 83  SLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLTLLENHQPVFSDRTIELPGKRMDVWQW 142

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL     +      A + F
Sbjct: 143 TVPFFAADGQLQGLLGGWIDITERKQLEQQLQEAMRLADQANEAKSAF 190



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFL 359
           +NDQL   + +   +   I + D    L   NRS+ +   I    +     ++  L+   
Sbjct: 46  LNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 105

Query: 360 RSANKLPEQLNWKTWKENIFSVY-----KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            +        ++ T  EN   V+     +      D W      T+          G + 
Sbjct: 106 LAEQM---HTDYLTLLENHQPVFSDRTIELPGKRMDVWQW----TVPFFAADGQLQGLLG 158

Query: 415 MFENLTVQVDLETKYNTLVKVQGET 439
            + ++T +  LE +    +++  + 
Sbjct: 159 GWIDITERKQLEQQLQEAMRLADQA 183


>gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1476

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 931  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 988

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 989  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1048

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1049 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1108

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1109 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1166


>gi|260170293|ref|ZP_05756705.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1464

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 919  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 976

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 977  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1036

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1037 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1096

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1097 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1465

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 919  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 976

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 977  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1036

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1037 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1096

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1097 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|237716456|ref|ZP_04546937.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1464

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 919  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 976

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 977  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1036

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1037 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1096

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1097 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|229114838|ref|ZP_04244251.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3]
 gi|228668530|gb|EEL23959.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3]
          Length = 466

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 130/291 (44%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      +     +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWIGRKIIIAITKPLSQMERVANHFATGDFSERITISSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 HSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  +RI    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYELKFIEKKLRISTNLNPEII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +I+   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQNGNIIITLEQIDDYCELKIKDTGIGIDAEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++H G   I S     TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWKIESEKGKGTTVFIKL 457


>gi|294660058|ref|XP_462511.2| DEHA2G22286p [Debaryomyces hansenii CBS767]
 gi|199434441|emb|CAG91021.2| DEHA2G22286p [Debaryomyces hansenii]
          Length = 1116

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 15/240 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+PL  IIG T L   ++   L   Q + +  +   + 
Sbjct: 481 REAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLSLDTE---LTQYQREMLSIVHNLAN 537

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      L   +    +++A K  E ++ +    D    
Sbjct: 538 SLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALKTLAVKAIEKSLDLTYQCDSSFP 597

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGD---FIFSVKNNGSS 729
            + + D  RL Q+   +  NA+ F+ KG  V +   +     ++ +     F V + G  
Sbjct: 598 DNLIGDSFRLRQVILNLAGNAIKFTKKG-RVSVSVKKSTRIIEDKERLLLEFCVSDTGIG 656

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I +D    +F+ F        R   G GLGLSI +  I+L GG + ++S     +     
Sbjct: 657 IEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIHLMGGEIWVTSDYGEGSNFYFT 716


>gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
 gi|156111849|gb|EDO13594.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
          Length = 1464

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 919  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 976

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 977  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1036

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1037 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 1096

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1097 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 1154


>gi|262274945|ref|ZP_06052756.1| aerobic respiration control sensor protein ArcB [Grimontia hollisae
           CIP 101886]
 gi|262221508|gb|EEY72822.1| aerobic respiration control sensor protein ArcB [Grimontia hollisae
           CIP 101886]
          Length = 782

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 146/387 (37%), Gaps = 17/387 (4%)

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               + +   +  +   + +      +    ID   + +      G+    N A   L  
Sbjct: 130 EEAMVDLENEVYQREKAQVELAEQTALLRSFIDASPDLIYYRNEKGQFSGCNRAMEDLTG 189

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +E  L   T         +    E+D       +  +++   +   G       +  E 
Sbjct: 190 KKEKELVGLTPWDVYREDIASKVVETDQQVFDNNVSLTYEQWLEYQDG-----RKAYFEL 244

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             +P  +       +        ER      +AL KA   K +F+  +S+ELR+PL  I+
Sbjct: 245 RKLPFYSRDGRRLGLVGFGREITER--KRYQDALEKASRDKTAFISTISHELRTPLNGIV 302

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G + +L  ++   L+ +Q  ++  I  S+  L N+ NDI+DL   D   ++L    + L 
Sbjct: 303 GLSRMLLETR---LSEEQLGHLRTIHVSAITLGNIFNDIIDLDKSDRRRLELMPQPVDLP 359

Query: 649 DLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS- 706
           D ++E++   A    +  +R  +        +   D  RL QI   ++ NA+ F+ +G+ 
Sbjct: 360 DFVSEIESISALMAQQKGLRFTLDRLTDLPPAVKVDATRLRQILWNLVGNAVKFTKQGAV 419

Query: 707 --TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIV 761
             TV      D     F V+++G  IP +    +F  +             G G+GL++ 
Sbjct: 420 NVTVSCDVEEDTAHLQFEVEDSGIGIPLEEQDKIFAMYYQVKQGEDNLHAVGTGIGLAVS 479

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
                L  G +++ S     +T    +
Sbjct: 480 RKLARLMNGDITVDSEVGEGSTFTVTL 506



 Score = 44.5 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 84/206 (40%), Gaps = 27/206 (13%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVA-----ETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +L+K   KL +E ++ D+       E  N   ++IE R     A  R  ++  + 
Sbjct: 81  EESRQRLTKLVVKL-EEMRARDMELNRQLTENINQLNLEIEERKRAEEA--REEAMVDLE 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +E+ +      +L+   ++ +   D+   L+++R++ G     N + +  T   G   ++
Sbjct: 138 NEVYQREKAQVELAEQTALLRSFIDASPDLIYYRNEKGQFSGCNRAMEDLT---GKKEKE 194

Query: 236 AIGESR-KLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIVRVL---- 283
            +G +   +++E+I  +++ +   ++ F   VS         + G    +++ ++     
Sbjct: 195 LVGLTPWDVYREDIASKVVETD--QQVFDNNVSLTYEQWLEYQDGRKAYFELRKLPFYSR 252

Query: 284 --NSFGEAGIAIDVSKEITVNDQLTH 307
                G  G   ++++     D L  
Sbjct: 253 DGRRLGLVGFGREITERKRYQDALEK 278


>gi|223936120|ref|ZP_03628034.1| signal transduction histidine kinase with CheB and CheR activity
            [bacterium Ellin514]
 gi|223895342|gb|EEF61789.1| signal transduction histidine kinase with CheB and CheR activity
            [bacterium Ellin514]
          Length = 1259

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/506 (18%), Positives = 198/506 (39%), Gaps = 44/506 (8%)

Query: 296  SKEITVNDQLTHTYEILHNLT----VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
             + ++ N+QL      L NL      AI + +++  ++        ++ +          
Sbjct: 786  EEMVSRNEQLNRLISDLKNLHVSIHTAILVLNRDLNIRHFTPEAEAMFNLLAT------- 838

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----- 406
                 +  R    +   L+    +  +  V  +    +       G+   + +       
Sbjct: 839  -----DAGRPLGSVRHNLDCPDLEAVVREVIDTVSVREREIQDKAGRWYSLRIRPYLTLD 893

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
            N   G + M  ++      E +     +     ++++   + V   + R++++N AF   
Sbjct: 894  NKIDGAVVMLVDVNALKRSEQEVKKAHEYVQAIVENVP-PLLVLDEELRVEMANDAFCRH 952

Query: 467  WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
            ++      + G+ I ++    +  +N  +   L   I          L G   + +  V 
Sbjct: 953  FQVSPTE-TEGSLIYDLG---NGQWNIPELRRLLDEI----------LPGNTAVKNFEVS 998

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                 P    + ML      D +R      +     +K +    SFV  ++++LRSPL  
Sbjct: 999  --HKFPHLGPRIMLLDACRLDHLRKIILCIQDATDQKKTESQLESFVYSIAHDLRSPLRA 1056

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            + GF ++L T    ++N +  ++   I AS+  + +L++D+L  A +  G   ++   + 
Sbjct: 1057 MQGFANMLVTEHGPAMNEEGREFAARIEASARFMDHLLSDLLAFAKI--GSQTIDLGPVD 1114

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG- 705
            L  L+ EV      ++ + + +I+++  G L    A    L Q+ + +LSNA+ F + G 
Sbjct: 1115 LRQLVEEVVARHQMEIQDKHSKIEIV--GPLPKVRAHASTLGQVITNLLSNALKFVAPGV 1172

Query: 706  -STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
               V L A       I SV++NG  I ++    +F  F          G G+GL+IV+  
Sbjct: 1173 SPQVRLWAEVRGATVILSVEDNGIGITQENANKLFQIFRRLHTTSSYPGTGIGLAIVQKG 1232

Query: 765  INLHGGHVSISSSDEGVTTINCRIPS 790
            +   GG V + S+    +     +P+
Sbjct: 1233 VERMGGSVGVQSTPGKGSRFWIELPT 1258


>gi|163846960|ref|YP_001635004.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524780|ref|YP_002569251.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668249|gb|ABY34615.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448659|gb|ACM52925.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 751

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 156/390 (40%), Gaps = 32/390 (8%)

Query: 405 TSNPRGGTIWMFENLTVQ-VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           T N  G     F  +T   ++L  +     + +   ++ +++G+      G I+  N A 
Sbjct: 368 TQNEIGVLARQFNRMTEYLIELLAQVRAEARQRTAIVESITDGIIFIDVHGEIRSINRAT 427

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
           R L    ++                +  ++     L   I   F D+R      L  L D
Sbjct: 428 RRLLGLSDDT------------ALPKRLSDLPLEPLTEGIP-GFGDQRAQ---NLYTLGD 471

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            ++  S+  +      L           E  +          D  K +F+  +S+ELR+P
Sbjct: 472 YIVRLSVEDVREDDGHLLGYVAVLQDLTEEVM---------VDRAKTNFIGTISHELRTP 522

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT I G  DLL     G L  +Q  +VE I   +  + NL+++++ +A +D+G +K    
Sbjct: 523 LTVIRGNADLLARGLAGPLEDEQKSFVEAIRLQANNMTNLISNVITIANLDSGSLKSTLE 582

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            I +   + +       ++    +R++V    KL   +AD   +  I  ++L NA  ++S
Sbjct: 583 PIEVQRPIEDAIWQTQGQIKAKGLRLEVEIPKKLPKVLADFDHVRTIMLQLLDNARRYTS 642

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-----GQRRGVGLGL 758
            G T+ ++           V + G  IP ++ + +F RF              RG+GLGL
Sbjct: 643 AG-TITVRVMPQPDTLRIEVSDTGRGIPPNLHQQIFERFFRGDGTSEGINSSERGIGLGL 701

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +I +  I   GG + + S+    +T    +
Sbjct: 702 AICKQLIERLGGTIGVESAPGQGSTFFFTL 731


>gi|255535690|ref|YP_003096061.1| two-component system sensor histidine kinase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341886|gb|ACU07999.1| two-component system sensor histidine kinase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 639

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/530 (18%), Positives = 209/530 (39%), Gaps = 58/530 (10%)

Query: 287 GEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIF-DQNRYLQFHNRSFVELWEI 341
           G + +A +V+ ++    +L        E+L     + AI+  ++  ++F N   +  W  
Sbjct: 140 GISVVATEVTDKVLSEKKLLESELRFKELLLVSDYSTAIYRGRDLIIEFANDQMIRSWGK 199

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK--ENIFSVYKSSETHKDTWHL-PNG- 397
           + + +                + +PE       +  ++IF   K     +D  HL  +G 
Sbjct: 200 NSSVIGKK-----------LEDAIPELAGQPFVQILKDIFETGKPYIAKEDEVHLDVDGK 248

Query: 398 -QTLHVIVTSNP----RGGTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
            QT +   +  P     GG   +     ++T  V+   K            + + + V  
Sbjct: 249 LQTFYFNFSYKPLRDASGGIYAIMNVAVDVTELVNAREKARANENEYRTLAEAMPQMVWT 308

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
             P G+I   N     +       L+       I  +  R         L  A+     +
Sbjct: 309 AVPSGKIDYCNRNMCEMLDCTAEELAINDFTDIIHPSDLR---------LMKALWKEATE 359

Query: 510 ERKSLQGTLELLSDSVLEYS-----IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           +++S +    +      +YS       P+ +   ++ ++    ++   + L  +      
Sbjct: 360 QKESFEHEYRMRDHRTGQYSWFLGTATPVMDNDEIVKWIGSCTNINEFKNLVTQ------ 413

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
               K++F+   S+EL++PLT++  +  +L+     S + K +   + +      L +L+
Sbjct: 414 ----KDTFLGIASHELKTPLTSLKLYAQVLERMLAKSGDQKHADLAKKMDLQVVKLTSLI 469

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
            D+LD+  ++AG + LN +      L+ E  +          +    + +   G   AD+
Sbjct: 470 ADLLDVTKINAGKIHLNEAHFDFKSLVEETVEEQQMS----TLHTIEVEELAGGMVFADK 525

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +R+ Q+ + ++SNA+ +S + S +I+K  + +GD +FSV + G  +P D    VF ++  
Sbjct: 526 ERISQVMTNLISNAIKYSPQASKIIVKTKKVDGDLVFSVTDFGIGLPRDTMHRVFEQYYR 585

Query: 745 --NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                +    G+GLGL I    +    G + + S  +  +T    +P  +
Sbjct: 586 VSAEDQNTFPGLGLGLYIAGQIVERSNGKIWVESEIDRGSTFYFSLPLVQ 635



 Score = 44.5 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 96/265 (36%), Gaps = 37/265 (13%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFL-VWHRDQAGDILWAN----IS 221
           +I  +  + +E+ +  L  KKL      FK L    D+    +R +   I +AN     S
Sbjct: 137 KISGISVVATEVTDKVLSEKKLLESELRFKELLLVSDYSTAIYRGRDLIIEFANDQMIRS 196

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET---VSTLEHGNNKSY- 277
           + KN+   G   + AI    +L  +   + +       K +      V     G  +++ 
Sbjct: 197 WGKNSSVIGKKLEDAI---PELAGQPFVQILKDIFETGKPYIAKEDEVHLDVDGKLQTFY 253

Query: 278 ------KIVRVLNSFGEA-GIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQ--NR 326
                  +            +A+DV++ +   ++          L  A+   ++    + 
Sbjct: 254 FNFSYKPLRDASGGIYAIMNVAVDVTELVNAREKARANENEYRTLAEAMPQMVWTAVPSG 313

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
            + + NR+  E+ +     LA N    +  + +  ++    +L    WKE      +  E
Sbjct: 314 KIDYCNRNMCEMLDCTAEELAIN----DFTDIIHPSDL---RLMKALWKE----ATEQKE 362

Query: 387 THKDTWHLPN---GQTLHVIVTSNP 408
           + +  + + +   GQ    + T+ P
Sbjct: 363 SFEHEYRMRDHRTGQYSWFLGTATP 387


>gi|213969064|ref|ZP_03397203.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
 gi|213926062|gb|EEB59618.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
          Length = 1213

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 177/465 (38%), Gaps = 21/465 (4%)

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                 +   +  ELL  L   NK  E+      +        SS      W        
Sbjct: 486 WSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSSLPQPSLWGRIPPWVF 542

Query: 401 HVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            V+  +   G     +       +  ++  E + N  +  +   +D +   + V    GR
Sbjct: 543 WVVALALLTGLVSLAWSSRLKVQIRQRLKAECQLNDQLAFKHALLDGIPNPIYVRDLKGR 602

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---FDDERK 512
           +   N ++         +++    +        R   E    D  A +      F D   
Sbjct: 603 LISCNRSYEQSLGVSFEQMNGRRLLD--VEVIPRPLAEQMHADYLALLENHQPVFSDRTI 660

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            L G    +    + +          +  ++++T+    E+ L +      +A+E K+ F
Sbjct: 661 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 720

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  +S+E+R+P+  IIG  +L     L    +  +Q ++    S+T L+ L+ + LDLA 
Sbjct: 721 LASMSHEIRTPMGAIIGLLELECEQALRRGEAP-TQGLQVAHRSATELVALIGESLDLAR 779

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIF 691
           ++AG M+L+     L      V    + +  E  + +++  ++   G +  D  RL Q+ 
Sbjct: 780 IEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQVV 839

Query: 692 SKILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +L NA+ F+ +G+ V+ ++ + D  D       + ++G  I     + +F  F   A 
Sbjct: 840 HNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAAD 899

Query: 748 RG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGLSI    + L  G +S+ S     T +   +P 
Sbjct: 900 DTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPL 944



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +      +L++ ++    L D +   ++ RD  G ++  N SY++
Sbjct: 553 LVSLAWSSRLKVQIRQRLKAECQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQ 612

Query: 225 NT----ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
           +     E         +    +   E++    ++     +      +    G   +    
Sbjct: 613 SLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTIELSGKRMNVWQW 672

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL     +      A ++F
Sbjct: 673 TVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 720


>gi|60682677|ref|YP_212821.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
 gi|60494111|emb|CAH08903.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
          Length = 543

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 112/518 (21%), Positives = 205/518 (39%), Gaps = 45/518 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL--QFHNRSFVELWEIDLAFLATNPSN 352
            S +      L   ++IL NL   I + D        + N+       I           
Sbjct: 42  ASADDDYRRFL---FDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVGFSDV 98

Query: 353 DELLE-FLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           D   E   +   K+ E L            Y  +     DT  + +      I++S   G
Sbjct: 99  DIFGEERGKQYRKIDEDLVRAGIPYKAEERYVTADGKVHDTLVMKS------IISSGKLG 152

Query: 411 GTIWMFE-NLTVQVDLETKYNTLVKV-------QGETIDHLSEGVAVFGPDGRIKLSNPA 462
             + +    +T     E +     +        Q   +  +  G+            N  
Sbjct: 153 KWLLVARWEITQLKMYERELLAAKEQLEGAVCKQKLALRSIDFGLIYIDR-------NYL 205

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            +         L  G H       C R   +        A   +    +     T     
Sbjct: 206 VQWEETGNIKNLVSGRHY-TPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRHITHVDHV 264

Query: 523 DSVLEYSIIPLPNA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           D   E +  P+ +         +L F ++T+ ++ ER L E  E   +++ +K++F+ ++
Sbjct: 265 D--FEITATPVYDDTGNEIIGGLLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANM 322

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  IIGF+DL+  +       ++ +Y+  +++++ +LL L++DILDL+ ++AG
Sbjct: 323 SHEIRTPLNAIIGFSDLICQTDDV---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAG 379

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M  +Y+   +N+L+ ++   +  K     ++I             DR RL Q+   +++
Sbjct: 380 TMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLMN 439

Query: 697 NAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           NAM F+S+GS + L  +  R   +  F VK+ G  IP D    VF RFV        +G 
Sbjct: 440 NAMKFTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF--IKGT 496

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I    I   GG + + + +   +    R+P +E
Sbjct: 497 GLGLAICRVIIERLGGTIGVETREGKGSCFWFRLPVRE 534


>gi|302386529|ref|YP_003822351.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302197157|gb|ADL04728.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 467

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 147/293 (50%), Gaps = 9/293 (3%)

Query: 506 SFDDERKSLQGTLELLSDSVL----EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           S D   KS+   L+ +S  +L    +Y+ +     Q     +    +    + + E    
Sbjct: 175 SADSFSKSITRPLKEISQEMLKVNGDYTDLSFETYQYPEINIIAETTTEMSKNVKEYLNQ 234

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +    +I+  F  + S+EL++P+T++ G+ +LL++  +     ++  ++  I   +  + 
Sbjct: 235 IELEKQIRQEFFSNASHELKTPITSVQGYAELLESGIIQD-EEQKMDFIRRIKKEAVNMN 293

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+NDIL ++ ++A   ++  + + L+ LL+++ +S+      + + I V  D K     
Sbjct: 294 HLINDILMISRLEAKEAEVLKNDVRLSILLDDIVESLKPLAASHEVMIHV--DCKPLCIY 351

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           A+ Q++ ++F  ++SNA+ ++  G  V +    +N + I  VK+NG  IP++    +F R
Sbjct: 352 ANGQQMKELFGNLISNAIKYNKPGGQVWVTVTEENRNVIIRVKDNGMGIPKESLGRIFER 411

Query: 742 FVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F         ++ G GLGLSIV+  +N + G +++ S  +  T    +IP +E
Sbjct: 412 FYRVDKGRSKKQGGTGLGLSIVKHIVNFYHGTITVRSELDVGTEFVVKIPIQE 464


>gi|323351212|ref|ZP_08086868.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66]
 gi|322122436|gb|EFX94147.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66]
 gi|325690803|gb|EGD32804.1| sensor histidine kinase VicK [Streptococcus sanguinis SK115]
 gi|325696128|gb|EGD38019.1| sensor histidine kinase VicK [Streptococcus sanguinis SK160]
          Length = 448

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 28/382 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I   N         + + +
Sbjct: 75  INDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I ++ +    Y    D  DL   +     D   S     E LS  V  ++++   
Sbjct: 135 QN-MSILDLLSISDEY----DLRDLITNVPELTID---SQDENGEYLSLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   ++            +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQDKE-----------ERERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +V+     +  ++ +V D+L L+ +D     L          +  +
Sbjct: 235 DEGALS--EPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSHLEVELTNFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +       I             D  +L Q+   I++NA+ +S  G T+ + 
Sbjct: 293 LNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQVIDNIMNNAIKYSPDGGTITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  H 
Sbjct: 353 IKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHQ 412

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +   S     +T    +P +
Sbjct: 413 GFIWAKSEYGVGSTFTIVLPYE 434


>gi|218246908|ref|YP_002372279.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
 gi|218167386|gb|ACK66123.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
          Length = 563

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 117/255 (45%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A  +K+ F+   ++ELR+PL  IIGF  L+    +   + +Q +++E 
Sbjct: 304 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLRLVLDG-MADDSQEQQEFLEE 362

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILD+A ++AG M L   ++ L +L   +      +     +     
Sbjct: 363 AHKSALHLLNLINDILDIAKIEAGKMDLEVGSVELAELFEAIDNFTLPQAQRKRLNYSSK 422

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---------GDFI 720
               L   V   + QRLLQ+   ++SNA+ F+  G   +  +  +           G   
Sbjct: 423 YPPTLTPIVLYGNYQRLLQVMLNLVSNAIKFTHDGGIDITAEIVKKKLYWRDREFPGMIK 482

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  +  +    +F +FV    +H     G GLGL+I +  +   GG V   S  
Sbjct: 483 VRVSDTGIGVALEKQAKLFEKFVQVDGSHSKAYGGTGLGLAISQKLVEAMGGQVEFYSMG 542

Query: 779 EG-VTTINCRIPSKE 792
           EG  +T+   +P ++
Sbjct: 543 EGLGSTVTFTVPLEQ 557


>gi|90962156|ref|YP_536072.1| two component system histidine kinase [Lactobacillus salivarius
           UCC118]
 gi|90821350|gb|ABD99989.1| Two component system histidine kinase [Lactobacillus salivarius
           UCC118]
          Length = 461

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 165/372 (44%), Gaps = 28/372 (7%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           Q  L  KY+   +     ++++  G+ V     R+ +SN   +  +  +    +      
Sbjct: 109 QNKLSKKYDKRKREYLSLLEYIDIGILVIDYKNRLTMSNELGKDFFDFDNEWKNQDY--- 165

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                   Y    D   L   +  + +D++K +   ++ +   ++E S I +P       
Sbjct: 166 ------QNYIYNLDVRKLIEQVKLTKEDKKKQIVLKIDTVQ-KIVETSAIYIPIDSKRYL 218

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            + +   + A++ +          ++ +  FV ++S+++++P+T I GF++ L    L  
Sbjct: 219 IMLMLRDLTAQKEM----------EKKQLDFVGNLSHKIKTPITAITGFSETLLDGALDD 268

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                 Q++E I   ST L NLV+D++ ++ + + G   LN   + +  L+ +  Q  + 
Sbjct: 269 -KEVSKQFIEIIHDESTKLSNLVDDMITISRLNEHG--SLNIELVNIFKLVKDTLQLFSH 325

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDF 719
           ++ +  + +++  D +L S   D+ +L  I + ++ NA+ ++ +   + +K   D   ++
Sbjct: 326 EIEKKGLNVRIEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNEW 384

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +F + + G  I +   + +F RF      H     G GLGL++V+  ++   G + + S 
Sbjct: 385 VFVISDTGIGISDKDKERIFERFYRVDKSHSKTVGGTGLGLAVVKESVDALSGRIKVKSQ 444

Query: 778 DEGVTTINCRIP 789
               TT    +P
Sbjct: 445 INKGTTFYVILP 456


>gi|291568216|dbj|BAI90488.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
          Length = 1262

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 153/330 (46%), Gaps = 21/330 (6%)

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                  I+++ A  + Y++E +G    A  ++   + R      ++LL +SV     I L
Sbjct: 708  FCQQFEIKSLLAIRTSYHSEPNG----AIYLSQCSNSRTWTDEEIDLL-ESVAAKMGIAL 762

Query: 534  PNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              A  +         +  +  AL E   A   A+  K++F+ ++S+ELR+PL  I+GF+ 
Sbjct: 763  AQANLLEREKQQRLKLATQNIALEEARRAADAANRAKSTFLANMSHELRTPLNAILGFSQ 822

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L+  + + +  S++   +  I+ S   LL L+NDILDL+ ++AG +        L+ LL 
Sbjct: 823  LMADNPIFAEGSQE---LAIINRSGEHLLELINDILDLSKIEAGKITFEIHPFDLHRLLE 879

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             +++    K    +I + +     L  +V  D ++L Q+   +L+NA+ F+  G   +  
Sbjct: 880  TLEEMFKLKAANQDIILTINRPIYLPRYVLGDEKKLRQVLINLLANAIKFTIAGEVTLYT 939

Query: 712  --------AARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSI 760
                    A  D+   +  F V++ G  I  +   ++F+ FV        + G GLGL I
Sbjct: 940  KTLPTPKDAETDSNTVLMQFMVEDTGPGISSEEINALFDAFVQTETGRYSQEGTGLGLPI 999

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIPS 790
               F+ L GG +++ S+    +  +  IP 
Sbjct: 1000 SRKFVKLMGGDITVDSTRGVGSKFSFEIPL 1029


>gi|239993253|ref|ZP_04713777.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii ATCC 27126]
          Length = 938

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 109/228 (47%), Gaps = 7/228 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K  F+ ++S+E+R+P+  IIG  +L+  ++   L    S   + IS S++ LL +++
Sbjct: 573 NVAKTQFLANMSHEIRTPMNGIIGSCELMLENE---LPENVSARAKTISRSASNLLIILD 629

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADR 684
            ILD + +++G M  +  +  + +LL                 I + I+ G   +   D 
Sbjct: 630 SILDWSKIESGKMLTDIQSCAIRELLEASCDLYRHAAQVKGYDIALYINQGVPNALNIDA 689

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            ++ QI + +LSNA+ F+S G  V +  +  +     SV + G  I  +  + +F++F  
Sbjct: 690 GKVSQIINNLLSNAIKFTSDG-VVTVNVSYAHQGLKISVSDTGIGIAPNKLRLIFDKFEQ 748

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 R   G GLGL+I +  + L GG + + S     T+    IP+
Sbjct: 749 ADPSTTRNFGGTGLGLAISKGLVELLGGELYVESELGKGTSFTFHIPA 796


>gi|326693101|ref|ZP_08230106.1| histidine protein kinase; sensor protein [Leuconostoc argentinum
           KCTC 3773]
          Length = 623

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 159/414 (38%), Gaps = 36/414 (8%)

Query: 389 KDTWHLPNG--QTLHVIVTSNPRGGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSE 445
           + T  + NG    ++ I  S+  G        L+ +V+      N         + H+++
Sbjct: 216 EQTTKIANGDYSMVNHIYGSDEIGHLAQSVNELSTRVEESTETVNAERNRLDSVLTHMAD 275

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           GV      G + + N A       +    + G H+ ++            G      ++ 
Sbjct: 276 GVLAANRRGEVTIINQAAADFVGVDREE-AIGQHVVDLLHL--------RGKRTLRDMLE 326

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           + DD +  L    +   + V++  +  +      ++ + V      E+          + 
Sbjct: 327 NLDDFQVDLS---DAGKEVVVQAYVSLIKRQSGFISGLVVVLHDITEQQ---------RI 374

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  +  FV +VS+ELR+PLT++  + D L    +         +++ +   +  ++ ++N
Sbjct: 375 DSERRMFVSNVSHELRTPLTSVRSYVDALAEGAIND-PEMAQNFLDVVQDETQRMIRMIN 433

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE---------NNIRIKVISDGK 676
           D+L+L+ +D G M +    + LN L N V       +            +  IK     +
Sbjct: 434 DLLELSRLDQGTMDVKLEVVNLNSLFNFVLNRFDMIIENDAKNADTPNKSYNIKREFTNE 493

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                 D  +  Q+   I++NA+ +S  G T+  +  +     I S+ + G  IP     
Sbjct: 494 DVWAEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLGIPRKDLD 553

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++FNRF        R   G GLGL+I +  +    G + + S +   +T    +
Sbjct: 554 NIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYISL 607



 Score = 37.6 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 23/167 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL-LE 357
            TVN +      +L ++   +   ++   +   N++  +   +D          D L L 
Sbjct: 257 ETVNAERNRLDSVLTHMADGVLAANRRGEVTIINQAAADFVGVDREEAIGQHVVDLLHLR 316

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
             R+   + E L+   ++ ++    K          +           S    G + +  
Sbjct: 317 GKRTLRDMLENLD--DFQVDLSDAGKEVVVQAYVSLIK--------RQSGFISGLVVVLH 366

Query: 418 NLTVQ--VDLETK---------YNTLVKVQGETIDHLSEGVAVFGPD 453
           ++T Q  +D E +           T +      +D L+EG A+  P+
Sbjct: 367 DITEQQRIDSERRMFVSNVSHELRTPLTSVRSYVDALAEG-AINDPE 412


>gi|322434681|ref|YP_004216893.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
 gi|321162408|gb|ADW68113.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
          Length = 577

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 8/252 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            ++   +R+         + D IK+ F+  VS+ELR+PLT+I G   LL    +G +++K
Sbjct: 41  QEASEQQRSKDSLLTQRSELDTIKDEFISTVSHELRTPLTSIRGALGLLSAGMMGEVDAK 100

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +     ++  L+ L+NDILDL  +++G   L+     L DL+ +  +++       
Sbjct: 101 AQNLLRIAVTNTDRLIRLINDILDLERMESGRAPLHVRRCSLRDLVQQSVETMTPMAQTA 160

Query: 666 NIRIK--VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
            + +   ++S  +   F  D  R+LQI + +LSNA+ FS   S V ++   D    +  V
Sbjct: 161 QVELTLALLSPPEGMYFDGDPDRILQILTNLLSNAIKFSPAQSIVTIQVEADLDSVLVRV 220

Query: 724 KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD--- 778
            + G  IP +   ++F+RF     +   Q+ G GLGL+I  + +  H G +   S++   
Sbjct: 221 ADQGRGIPLEKLDTIFDRFQQVEASDARQKGGTGLGLAICRTIVLQHNGSIWAESNESHQ 280

Query: 779 -EGVTTINCRIP 789
                T+   +P
Sbjct: 281 RGPGATLLVSLP 292


>gi|224477937|ref|YP_002635543.1| two-component sensor histidine kinase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222422544|emb|CAL29358.1| two-component sensor histidine kinase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 614

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 152/404 (37%), Gaps = 36/404 (8%)

Query: 399 TLHVIVTSNPRGGTIWM-FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           T  V +  N   G + + F NL+ +V + +    +  +     I H+S+GV      GRI
Sbjct: 226 TQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGVIATDRRGRI 285

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++ N     +    +  +     +  +       +   +  +   + +   ++E    +G
Sbjct: 286 RIVNDMALKMLGMAKEDVMGYNMLSVL--DLEDEFALDEMQENNNSFLLDINEE----EG 339

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +  +S     +S I             + D    ++            +  +  FV +V
Sbjct: 340 IIARVS-----FSTIVQDTGFVTGYIAVLHDVTEQQQ-----------NERDRREFVANV 383

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT++  + + L+            Q++      +  ++ LVND+L L+ +D  
Sbjct: 384 SHELRTPLTSMNSYLEALEEGAWKD-EEIAPQFLSVTREETVRMIRLVNDLLQLSKMDNA 442

Query: 637 IMK-----LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
             +     +    +  N  +N++           ++        +      D  ++ Q+F
Sbjct: 443 NEENASNQVTKEIVDFNMFINKIINRHEMAA--KDVTFVRDIPEETIFTEIDPDKMTQVF 500

Query: 692 SKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             +++NA  +S     V      +         +K+NG  IP      +F+RF       
Sbjct: 501 DNVITNATKYSRGDKRVEFHVKPNPLYNRMTIRIKDNGIGIPITKVDKIFDRFFRVDKAR 560

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            R   G GLGL+I +  +  H G +  +S +   T+I   +P +
Sbjct: 561 ARKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCE 604


>gi|210622684|ref|ZP_03293306.1| hypothetical protein CLOHIR_01254 [Clostridium hiranonis DSM 13275]
 gi|210154085|gb|EEA85091.1| hypothetical protein CLOHIR_01254 [Clostridium hiranonis DSM 13275]
          Length = 476

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 120/243 (49%), Gaps = 5/243 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +         +    + K +++KN F+  +S+ELR+PLT+I G+++ L     G    + 
Sbjct: 230 EIGELAETFEKMAVEIDKNEKLKNEFISSISHELRTPLTSIKGWSETL--GYEGINKEEL 287

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  I   +  L+ LV ++LD + + +  +KL   ++ +  L+  V   +  K  E +
Sbjct: 288 DMGLGIIQDETERLIKLVEELLDFSRLSSQRIKLVIDSVDVESLVVGVINQLKVKAAEKD 347

Query: 667 IRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           IR+    + G++ +   D+ RL Q+   ++ N++ F+  G  + +   +D+     SV +
Sbjct: 348 IRLLFEFECGEVKNIQGDKNRLRQVLINLVQNSLKFTDVGGFIKITVNQDSEFTTISVTD 407

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           NGS I ++  + VF++F    +   + G GLGL+I    + LH G +SI S     T+I 
Sbjct: 408 NGSGIDKENLERVFDKFFQEDY--NKSGSGLGLAISNEIVKLHNGEMSIESKKNVGTSIT 465

Query: 786 CRI 788
             +
Sbjct: 466 FTL 468


>gi|254411499|ref|ZP_05025276.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182000|gb|EDX76987.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 524

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 123/302 (40%), Gaps = 35/302 (11%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R   Q  L+ LS  ++E +   +   Q            + E AL +  E    A+  K+
Sbjct: 118 RVENQLRLQRLSQQLVEQNAQLIQEIQI---------RQQTEAALHQAVEQAEAANRAKS 168

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+ELRSPLT I+G+  LL+  K       Q + +  I    + LL L+NDILDL
Sbjct: 169 VFLANMSHELRSPLTGILGYAQLLQ--KATDCTPLQQKGLGVIYQCGSHLLTLINDILDL 226

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQ 689
           + ++A  +++    I     LN + +    K  E  ++               D +RL Q
Sbjct: 227 SKIEAQKLEIFPDYIDFCLFLNHLAELFKFKAQEKKLKFAYFPLTSLPPEIYVDEKRLRQ 286

Query: 690 IFSKILSNAMDFSSKGST---VILK-------------------AARDNGDFIFSVKNNG 727
           +   +LSNA+ F+ +GS    V ++                     +   +  F +++ G
Sbjct: 287 VLINLLSNAIKFTHQGSVTLKVSVRSYSCELNDHKVTSSRQTDKVQKTLANIRFEIEDTG 346

Query: 728 SSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  +  + +F  F           G GLGL+I +  + L G  + + S     +    
Sbjct: 347 IGITPEKREKIFLPFEQVMESSHSPEGTGLGLTISKKILVLMGSKIFLESCPNRGSKFWF 406

Query: 787 RI 788
            +
Sbjct: 407 DL 408


>gi|330808143|ref|YP_004352605.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376251|gb|AEA67601.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 9/245 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L +   A   AD  K SF+  +S+E+R+P+  +IG T+LL  S   +L+ +Q + + 
Sbjct: 217 EQVLNQAKNAAEDADRSKTSFLATMSHEIRTPMYGVIGATELLARS---ALDPEQRRLLT 273

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S   LL+L+++ILDLA ++AG ++L      +  L++   + I   + +  I ++ 
Sbjct: 274 TIHSSGRTLLSLIDNILDLAKIEAGKLELKPRVFEVRALVSSCMELIRQNIQDKPIVLEA 333

Query: 672 ISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIFSVKNNG 727
                +   V  D   L QI   +L NA  F+  G     V            FS+++ G
Sbjct: 334 QFSPDVPPLVKTDMDCLRQILINLLGNAGKFTEAGKISLLVTTSGYGSQAWLDFSIRDTG 393

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP +   ++F  F         +  G GLGLSI ++ +    G +S +S     +T +
Sbjct: 394 IGIPTERQDNLFKPFAQFKGPASQRFTGSGLGLSICKNLLEAQQGTLSFTSEPGVGSTFS 453

Query: 786 CRIPS 790
             +P 
Sbjct: 454 FSLPL 458


>gi|325972366|ref|YP_004248557.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
 gi|324027604|gb|ADY14363.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
          Length = 935

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  VS+E+R+PL  I G + LL+ +   SL++ Q +YV+ IS ++  + +++NDI
Sbjct: 317 EKSRFLARVSHEIRTPLNGIRGMSYLLEKT---SLDANQMRYVKTISGATQTMQSIINDI 373

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           L+ + +D   + L      L+D+L       +  + +  +  ++     +    V D  R
Sbjct: 374 LEFSRLDEDRIILENIPFALDDVLENCISIESYLIQQKGLHFRLNQPDDVPQHLVGDPTR 433

Query: 687 LLQIFSKILSNAMDFSSKGS---TVIL-KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           L QI   +L+NA+ F+  GS   TV +   A  +    F VK+ G  + E   +++F  F
Sbjct: 434 LAQILINLLNNAVKFTEAGSIDLTVQVQTLAEQSCSLSFEVKDTGIGMNEQQMENLFKPF 493

Query: 743 VSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           V        +  G GLGLSIV++ +   GG ++++S     +     IP
Sbjct: 494 VQANASIHRKYGGSGLGLSIVKALVEKMGGTLTVTSEMGKGSAFTATIP 542


>gi|308172613|ref|YP_003919318.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307605477|emb|CBI41848.1| putative two-component sensor histidine kinase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552374|gb|AEB22866.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328910725|gb|AEB62321.1| putative two-component sensor histidine kinase [Bacillus
           amyloliquefaciens LL3]
          Length = 1028

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 1/242 (0%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R     +  L K +++K+ F+   S+E ++PL +II     L   +      ++ + +
Sbjct: 411 AFRDNEVLSRKLVKMNQLKDEFIAKTSHEFKTPLNSIINICQTLVAGRKKKTIEEEKENM 470

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I      L NLVNDILDL  +  G++++    + ++  +              N+ I 
Sbjct: 471 QLIIRMGYRLSNLVNDILDLEKMKQGLLQIRPVPVDVHAAICSEMNFYRLLSKHKNLDIL 530

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 L   +AD  R  QI + ++ NA+ ++S+G  ++   + +N     +V + GS I
Sbjct: 531 NHVPDDLPFVLADENRFRQILTNLVENAIKYTSEGKIILSAESLNNSMIQITVADTGSGI 590

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           PE   +++F+ F       +  G GLGLSIV+  + L  G +   S +   +  +  +P+
Sbjct: 591 PEADLETIFDSFQQAGGNNE-DGTGLGLSIVKQLVKLQNGDIWAESEEAKGSAFHFTLPA 649

Query: 791 KE 792
            +
Sbjct: 650 AQ 651



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 62/242 (25%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            E      +IK  F+ +V       L  II  +  L   K     +  + Y+         
Sbjct: 818  EMAFLQSQIKPHFLYNV-------LNTIIALSH-LDIEKARETTAAFTNYL--------- 860

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTI-VLNDLLNEVKQSIATKMHEN---NIRIKVISDG 675
                              M  ++     ++   NE+    +    E      R++++ D 
Sbjct: 861  -----------------RMSFDFQNTSDISSFKNELSIITSYLAIEKTRFGKRLEILFDI 903

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDF--SSK--GSTVILKAARD-NGDFIFSVKNNGSSI 730
                  +    ++Q    ++ NA+    S K  G  V L A +     ++  V++NG+ I
Sbjct: 904  DEDMDFSLPPLMIQ---PLVENAVHHGISKKRGGGWVKLTAKKQSENTYLIKVEDNGTGI 960

Query: 731  PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH----GGHVSISSSDEGVTTINC 786
              D+ K +             R VGL     ++         G  ++I S+ +  T ++ 
Sbjct: 961  MPDIQKDI-------LSSHVDRSVGL-----KNINRRLKHFCGSELTIESTPDAGTAVSM 1008

Query: 787  RI 788
             I
Sbjct: 1009 MI 1010


>gi|300867581|ref|ZP_07112231.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334469|emb|CBN57401.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 532

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/415 (22%), Positives = 182/415 (43%), Gaps = 34/415 (8%)

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQ--------------GETIDHLSEGVAVFGP 452
           +     I +FE++T ++  +                         + I  + + + V   
Sbjct: 102 HIENRLIILFEDVTEKMVAKQVLIQRANEANLLLSALAASKDYIDKIIKSMGDALLVTTT 161

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--- 509
            G IK  N + + L+   E  L  G  I  I             + L    +++FD    
Sbjct: 162 AGTIKTVNQSAQFLFGYSEGEL-IGESISLITDEDKLLSQARHRYILCQGELSNFDIKLL 220

Query: 510 -ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             +K+ Q      S S ++  I  L +   +    ++T+  R E  +       ++  EI
Sbjct: 221 CRKKTKQEIWVEFSCSAIQTEIQGLHD--FVYIGRDITERNREEIEIRTALAKEKELREI 278

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F   +++E  +PL  ++  T++LK  +L +  +++ QY+ +I  +S  ++ L+ND+ 
Sbjct: 279 KSRFFSMIAHEFANPLNTVLMSTEILKEHQLETTEAEKIQYLTHIKTASKHMIELLNDVR 338

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS----------DGKLG 678
            +++ + G ++ N   I L    +++ + I      N+I I+ +           DG+  
Sbjct: 339 FISSAELGKIEFNPVPIDLTKFCSDLVEEIKIAAGRNHI-IQFVPTQKSAQNPGEDGQQA 397

Query: 679 SFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
             +   D + + QI S +L NA+ +S +GSTV  +  +   + +F++K+ G  IP    +
Sbjct: 398 EILPLLDAKMMRQILSNLLLNAIKYSPQGSTVYFEFEQSFLEAVFTIKDEGIGIPIADQE 457

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F  F    + G+  G GLGL+IV+  +NLHGG +  SS     TT    IP K
Sbjct: 458 QLFESFYRAHNVGKISGTGLGLAIVKECVNLHGGSIIFSSEVGAGTTFRVAIPLK 512


>gi|291615283|ref|YP_003525440.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585395|gb|ADE13053.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 450

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 155/375 (41%), Gaps = 13/375 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGET-IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +  +  +E       + Q +  I    +   +    GRI   N A+ ++       L  G
Sbjct: 75  IRERKRIEDMLRKNEEEQFKVMIRTSLDAFLIMDMQGRILEVNDAYCNMLGYSRAEL-IG 133

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            +I ++ A  +          L       F+   +   G ++++ +S    +   L   +
Sbjct: 134 MNIADVEAAETEDGVVRHIGTLMQKGSDRFESRLRRKDGQIQIVEESS---NYSDLHGGR 190

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                 ++T+  + E    +  + L  A+E  N+F   VS++L++PL  I    D L T 
Sbjct: 191 VYCFLRDITERKQVEAHRAQLLQELGSANEELNNFAYVVSHDLKAPLRGISSLADWLSTD 250

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                +    + +  +      +  L++ IL  + V  G +K   + + +  L+ EV   
Sbjct: 251 YADKFDEDGKEQMRLLINRVHRMDGLIDGILLYSRV--GRVKETMTAVDIGRLVPEVIDL 308

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAARDN 716
           +A   +     I V  +  L + +A+  R+ Q+F  +LSNA+ +  K    + +    + 
Sbjct: 309 LAPPAN-----IAVTIEDPLPTVMAEPTRIQQLFQNLLSNAIKYMDKPEGRIRINCCAEG 363

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             + FSV +NG  I +   + +F  F + A R +    G+GL++V+  + ++GG + + S
Sbjct: 364 KQWKFSVSDNGPGIKQQHFEKIFQLFQTLAPRDRVESSGVGLALVKKIVEMYGGTIWVES 423

Query: 777 SDEGVTTINCRIPSK 791
                +T    +P K
Sbjct: 424 VVGEGSTFFFTLPRK 438



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 19/170 (11%)

Query: 293 IDVSKEITVNDQLTHTYE-----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
           I + +   + D L    E     ++     A  I D    +   N ++  +     A L 
Sbjct: 73  IQIRERKRIEDMLRKNEEEQFKVMIRTSLDAFLIMDMQGRILEVNDAYCNMLGYSRAELI 132

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                  + +   +  +     +  T  +     ++S           +GQ   V  +SN
Sbjct: 133 G----MNIADVEAAETEDGVVRHIGTLMQKGSDRFESR------LRRKDGQIQIVEESSN 182

Query: 408 ---PRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                GG ++ F  ++T +  +E     L++  G   + L+    V   D
Sbjct: 183 YSDLHGGRVYCFLRDITERKQVEAHRAQLLQELGSANEELNNFAYVVSHD 232


>gi|229004342|ref|ZP_04162126.1| hypothetical protein bmyco0002_13030 [Bacillus mycoides Rock1-4]
 gi|228756909|gb|EEM06170.1| hypothetical protein bmyco0002_13030 [Bacillus mycoides Rock1-4]
          Length = 423

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 161/373 (43%), Gaps = 41/373 (10%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
                 +     +  +++GV     +  + + NP      +  +                
Sbjct: 81  ALQQEKEQLSSILSSMADGVVTLNQECEVVVINPPAEHFLQVWQ---------EEKELEL 131

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           SR     +  +LF  ++ S  ++++ ++  L+  +  VL   + PL N   +   V V  
Sbjct: 132 SRNLP-PELVELFHLVVES--EQQQVIEINLQKGNYVVL---MTPLYNQTKIRGAVAVLR 185

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +  ER L          ++++  F+ +VS+ELR+P+  + G+++ +    +     + +
Sbjct: 186 DMTEERRL----------EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIV-QTKEEIN 234

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++V+ I   S  L  LVN++LDLA +++G ++L+ S + ++  + ++ +       E N+
Sbjct: 235 EFVQIIYDESVRLGRLVNELLDLARMESGHVELHISEVDIHPFVEKIGRKFQGIAKEKNV 294

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R+ V     +     D  R+ Q+ + ++ NA+  ++ G  V L     N   +F V+++G
Sbjct: 295 RLTVDFRNPIEQHSFDPDRMEQVLTNLIDNAIRHTNAGGHVELIIDTKNNGLMFEVQDSG 354

Query: 728 SSIPEDMCKSVFNRFVSNAHR---------GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           + IPE+    +F+RF               G         +I ++ +  H G VSISS  
Sbjct: 355 AGIPEEDIPFLFDRFYKADKARTRGKTGGTGLGL------AIAKNIVQGHNGKVSISSVV 408

Query: 779 EGVTTINCRIPSK 791
              T  +  +P +
Sbjct: 409 GEGTIFSVYLPGQ 421


>gi|14600272|gb|AAK71320.1|AF393849_2 sensor protein CovS [Streptococcus mutans]
          Length = 450

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 135/383 (35%), Gaps = 32/383 (8%)

Query: 417 ENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR-SLWKTEENRL 474
            +L+    L               + ++++GV      G+I + N   +  L  T E  L
Sbjct: 76  NDLSEVFRLTHENLAQEKNRLTSILSYMTDGVLATDRRGKITVINDMAQKQLNVTREQAL 135

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               +I +I    S  YN     DL           R      + L     L        
Sbjct: 136 EC--NILDILDDDSYTYN-----DLITKTPEIVLTRRDEYDEFITLRIRFALNRRKSGFI 188

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +                  A+        K +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 189 SGLF---------------AVLHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEAL 233

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    S    +++     +  ++ ++ D+L L+ +D     L+         +N +
Sbjct: 234 DDGAL--TESVAPSFIKVSLDETNRMMRMITDLLSLSRIDNQTSHLDVELTNFTAFMNYI 291

Query: 655 KQSI----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
                   + +       I      K      D  ++ Q+   IL+NA+ +S  G  V +
Sbjct: 292 LDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKVTV 351

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
                +   I S+ + G  IP+     +F+RF          + G GLGL+I +  +  H
Sbjct: 352 TMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQH 411

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G +  +S +   +T    +P +
Sbjct: 412 KGFIWANSEEGEGSTFTIVLPYE 434


>gi|116199517|ref|XP_001225570.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51]
 gi|88179193|gb|EAQ86661.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51]
          Length = 2325

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 18/236 (7%)

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            + K+ F+ +VS+ELR+PL  +IG ++LL+ S   +LN +Q +  + I  S+ +LL ++ND
Sbjct: 1825 KAKSIFLANVSHELRTPLNGVIGNSELLRDS---NLNKEQLEMADSIRVSADLLLTVIND 1881

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI----ATKMHENNIRIKVISDGKLGSFVA 682
            ILD + ++A  MKL        +++ EV +++      K  + N++I    +        
Sbjct: 1882 ILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIIQDINLPPMLIYG 1941

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL Q+   ++ N++ F+  GS + + A      ++N    F VK+ G  I     ++
Sbjct: 1942 DPIRLHQVLGNLIGNSLKFTEDGS-ITIGARIDKETKENATLTFWVKDTGIGISAQQLEN 2000

Query: 738  VFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTT--INCRI 788
            +F  F         +  G GLGLSI +S I  +  G + + S +   TT       
Sbjct: 2001 LFQPFSQADASTARKYGGSGLGLSICKSLIETMMQGTIRLESQEHLGTTAWFTVTF 2056


>gi|289628096|ref|ZP_06461050.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646717|ref|ZP_06478060.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867455|gb|EGH02164.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 645

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 117/252 (46%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++    ++Q
Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TAEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 302 REYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRE 361

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFS 722
           + +++         +   D  R+ QI   ++ NA+ F+ +G   ++   A  DN    F+
Sbjct: 362 LLLELHIQPGLDTVTVTGDPTRIRQILVNLIGNALKFTEQGKVSVVAQWAMLDNDQLHFT 421

Query: 723 --VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V ++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S +
Sbjct: 422 CAVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQE 481

Query: 779 EGVTTINCRIPS 790
              +    +IP 
Sbjct: 482 GSGSVFTLQIPL 493


>gi|241957485|ref|XP_002421462.1| histidine kinase, putative; nuclear response regulator and
           transcription factor, putative [Candida dubliniensis
           CD36]
 gi|223644806|emb|CAX40799.1| histidine kinase, putative [Candida dubliniensis CD36]
          Length = 1070

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 115/266 (43%), Gaps = 17/266 (6%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A        V +   + +  T   EA   A+  K+ F+ ++S+E+R+PL  IIG T L 
Sbjct: 467 DALKTKINQMVFNLRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLS 526

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   L   Q + +  +   +  LL +++DILD++ ++A  M +      L   +   
Sbjct: 527 LDTE---LTQYQREMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGA 583

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +++A K  E N+ +    D     + + D  RL Q+   +  NA+ F+ +G  V +   
Sbjct: 584 LKTLAVKAIEKNLDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEG-KVSVSVK 642

Query: 714 RDNGDFI----------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
           + +   +            V + G  I +D    +F+ F        R   G GLGLSI 
Sbjct: 643 KSDKLVLDSNSDKLLLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSIS 702

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
           +  I+L GG + ++S     +     
Sbjct: 703 KQLIHLMGGEIWVTSEYGSGSNFYFT 728


>gi|117168636|gb|ABK32300.1| Jer7 [Sorangium cellulosum]
          Length = 1762

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 126/270 (46%), Gaps = 16/270 (5%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q +       +  +A +AL EK   L    + K+ F+ ++S+ELR+PL +++  +D L  
Sbjct: 1048 QNVEVERKNREVEQARQALEEKARQLAITSKYKSEFLANMSHELRTPLNSLLILSDQLSK 1107

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L  +Q ++ + I +S   LL L+NDILDL+ +++G + ++   +  +DL + V++
Sbjct: 1108 NTDRNLTGRQVEFAKTIHSSGNDLLALINDILDLSKIESGTVIVDVGELSFSDLQDYVER 1167

Query: 657  SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILK- 711
            +         +  ++     L   +  D +R+ Q+   +LSN+  F+ +GS    V L  
Sbjct: 1168 TFQHVAESKRLEFELNFAQNLPQVIYTDAKRVQQVLKNLLSNSFKFTERGSVALDVDLVT 1227

Query: 712  ---------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
                      +R       SV++ G  IP D  + +F  F        R   G GLGL+I
Sbjct: 1228 SGWTIENEGLSRAGAAIAMSVRDTGIGIPHDKQQIIFEAFQQADGSTSRKYGGTGLGLAI 1287

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  + GG + +SS     +T    +P 
Sbjct: 1288 SREIAWMLGGEIKLSSRPGSGSTFTLYLPL 1317


>gi|225390054|ref|ZP_03759778.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
           DSM 15981]
 gi|225043882|gb|EEG54128.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
           DSM 15981]
          Length = 1138

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 155/348 (44%), Gaps = 24/348 (6%)

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A     +  E  L       NI    +              ++      RKS  G+L + 
Sbjct: 391 AIEYASRNTEKVLGIEDTFDNIIDERTLGCVAPRDRQAVLELVREVRAGRKS-SGSLSMH 449

Query: 522 -------SDSVLE---YSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIK 569
                  +D +L    Y I    ++Q+ +T    ++T+SV++ R L E      +A   K
Sbjct: 450 FTRPDTQADIILALNAYRIAEQDSSQSFITLTLEDITESVQSRRRLEEALLNEERAGAAK 509

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           ++F+  +S+++R+PL  +IG T+L   +   S   K  + ++ I+ SS +LL L+ND+LD
Sbjct: 510 STFLASMSHDIRTPLNAVIGLTNLALCTPNDS--KKVMECLQKIANSSQLLLGLINDVLD 567

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLL 688
           ++ +++G M+L  +   L + L  V   I ++         V + +        D  RL 
Sbjct: 568 MSKIESGKMQLAETEFELGEWLAGVVTVIQSQTSVRGQHFDVNAWNITHELLCGDTVRLS 627

Query: 689 QIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           Q+ + +L NA+ F+ KG  + L+ +        +  F+F + + G  +  +    +F  F
Sbjct: 628 QVLTNVLGNAVKFTPKGGEIYLEISEIPSPDPASARFVFRISDTGVGMSREYLSHIFEMF 687

Query: 743 V--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               NA+    +G GLG++I +  ++L GG + + S     TT    I
Sbjct: 688 TREQNAYSQGVQGTGLGMAITKRIVDLMGGSIRVESEPGKGTTFTVEI 735


>gi|170740792|ref|YP_001769447.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168195066|gb|ACA17013.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 512

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSK 605
           +  +A+    E      +A+  K+ F+  +S+ELR+PL  I+GF++++K    G   +  
Sbjct: 240 ELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPS 299

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ E +  +  +    
Sbjct: 300 YQEYSTDIHESGLHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMGLRARAK 359

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVK 724
           N   + + D  L    AD + + QI   ILSNA+ F+  G  + +K     +G    S+K
Sbjct: 360 NQNFRELVDPSLPRLWADERAVRQIVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIK 419

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IPED   +V + F   +   +   +G GLGL IV+  ++LHGG   + S     T
Sbjct: 420 DTGPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFQLKSKPREGT 479

Query: 783 TINCRIPS 790
            +    P+
Sbjct: 480 EVIVTFPA 487


>gi|257061154|ref|YP_003139042.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256591320|gb|ACV02207.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 626

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 127/261 (48%), Gaps = 10/261 (3%)

Query: 537 QTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           Q  +   ++ + ++A    +    +  + A+ +K+ F+   S+ELR+PL  IIG   +LK
Sbjct: 361 QLAIAIQDMVERLQAWGEEVVSAWQEAQNANRLKSEFLATTSHELRTPLNGIIGCLHILK 420

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                S   ++ ++++    ++  LL +++D+LDLA ++AG + ++   + L  LL+EV 
Sbjct: 421 EGYCDS-KEEELEFLQQAEQAAVHLLGIIDDVLDLAKIEAGKLSVSLEPVDLTSLLSEVI 479

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                 + +  + +    +       AD ++L Q+   +L NA+ F+ KG  + +K   +
Sbjct: 480 NLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVILNVLGNAIKFTEKG-NITIKTHIE 538

Query: 716 NG----DFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHG 769
                     +VK+ G  I       +F  F  V  +   +  G GLGL+I  + + L G
Sbjct: 539 ENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGSTTRKYSGTGLGLAISRNLMQLMG 598

Query: 770 GHVSISSSD-EGVTTINCRIP 789
           G++++SS   +  TT+   +P
Sbjct: 599 GNITLSSEGIDLGTTVKICLP 619


>gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
 gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
          Length = 1129

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 3/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + + ++N+ L+ AD++K+ F+   S+ELR+PL  +IG  + L +   G + + Q   ++ 
Sbjct: 444 KLIQKQNQELQLADKLKDEFLATTSHELRTPLHGMIGIAETLVSGANGGIPASQKYQLDI 503

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   L NLV+D+LD   +  G M +  S + L      V +  +  +    IRI   
Sbjct: 504 IIKSGQRLANLVDDLLDYHKMRYGSMDIEKSAVSLASATRLVLELSSHLLGNKTIRIINQ 563

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L +  AD QRL Q+   ++ NA+  +S+G  +++ A   +      V + G  IP 
Sbjct: 564 VPADLKAVSADPQRLEQVLYNLIGNAIKHTSEG-KIVISANIIDEQVRVQVVDTGQGIPA 622

Query: 733 DMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F   +         R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 623 EYLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGTLYVSSQPMVGTTFSFTLPL 682



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 5/115 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E ++ +      E L +   AI    +++ ++F N +  +L++  L  L  + ++    E
Sbjct: 866 EASLLETQGRLLEQLESAPEAIICLREDQRIRFANDAACKLFKRSLEQLKRSSAD----E 921

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
            +       +Q ++    +      + +    D   LP G  L V+   N  GG 
Sbjct: 922 LIAPKFLTVKQPHYCGKIDIYIEDIRQN-IEADILKLPEGSGLDVMYIFNVGGGV 975


>gi|307709234|ref|ZP_07645693.1| two-component sensor histidine kinase [Streptococcus mitis SK564]
 gi|307620180|gb|EFN99297.1| two-component sensor histidine kinase [Streptococcus mitis SK564]
          Length = 449

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 142/380 (37%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLHSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   I     D   S     E LS  V  +++I   
Sbjct: 135 LNKSILELL-----KIEDEYELRDLITQIPELIID---SQDANGEYLSLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALCETVAP--DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +  +    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDQIRGQDEDKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVT 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF        R   G GLGLSI +  I  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|221197443|ref|ZP_03570490.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221204116|ref|ZP_03577134.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221176282|gb|EEE08711.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221183997|gb|EEE16397.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 1001

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 157/387 (40%), Gaps = 30/387 (7%)

Query: 421 VQVDLETKYNTLVKV------QGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENR 473
            +  L   Y   +++          I     G+A+    DG   + N       +   + 
Sbjct: 376 DRRALRPAYRRAIRLIESDALNRALIRTAPAGLALLSLADGDDIVCNETMTRYERLTSDA 435

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                    +     R Y E      +A ++T           T  + ++ ++      +
Sbjct: 436 P--------LGKRLWRAYREHRDASGYAKVVTCELPIAPDRPDTPHVFAN-IMRTRYRGV 486

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                + T  ++T   + E+ L E   A   A++ K++F+  +S+E+R+PL  I+G  +L
Sbjct: 487 D--ALLCTLTDITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLEL 544

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +  + L        + ++ I++SS  LL +++D+LDL+  ++  M +      + D+L++
Sbjct: 545 MARAPLAPTE---RRRLDTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDD 601

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +            + +      +L   +V D  RL QI S ++ NA+ F+ +GS V + A
Sbjct: 602 IAAFYRPLASAKGLELTCRVAPELADGYVGDPVRLRQIVSNLVDNAIKFTERGS-VSIDA 660

Query: 713 AR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFI 765
            R             V + G  IP D   ++F+ ++        +  G GLGL +     
Sbjct: 661 RRVVRGAGGARVEIRVADTGIGIPADSVPTLFDVYIQADASIYRRFGGTGLGLPLCRRIA 720

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            L  G +++ S +   TT+   +P  E
Sbjct: 721 MLMHGDLTVDSREREGTTMCVTLPLPE 747


>gi|327312949|ref|YP_004328386.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Prevotella denticola F0289]
 gi|326946295|gb|AEA22180.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola F0289]
          Length = 896

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 5/240 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R    +     +A   K  F  ++S+ELR+PLT I    + +      +L+ +Q   +
Sbjct: 373 AYRTTVMRRHIEEEATTAKLQFFTNISHELRTPLTLIADPVEYIIHDP--NLSPQQRNML 430

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  +  +L  LV++ILD   +  G M+L+ S   L++ + +     AT   + +I ++
Sbjct: 431 QIVQRNVAVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHITLQ 490

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +     L    ADR +L +I   +LSNAM ++ +G  +   A+ +       V +NG  I
Sbjct: 491 LSVPSALP-MRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADKVKIMVSDNGCGI 549

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++    VF+RF    + G   G G+GL++V++F +LH G V++ S +    T    +P 
Sbjct: 550 AQNDLPYVFDRFYQAGNAGH--GTGIGLALVKAFADLHHGEVTVESKEGEGCTFTVWMPL 607


>gi|308048557|ref|YP_003912123.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
 gi|307630747|gb|ADN75049.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
          Length = 899

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +   +A  IK+ F+ ++S+ELR+PL  +IGFT  LLKT     L+  Q  Y+  
Sbjct: 272 ELDIAKKRALEASRIKSEFLANMSHELRTPLNGVIGFTRQLLKT----PLHDNQKDYLRT 327

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S++ LL+++NDILD + ++AG M L+     L D L+E    ++   ++  + + V 
Sbjct: 328 IERSASNLLSIINDILDFSKLEAGKMVLDNVPFALRDSLDETLTLLSGSAYDKGLEMVVE 387

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIF---SVKNNG 727
            D ++  S   D  R+ Q+ + ++ NA+ F+ KGS  + L  A ++ + +     V + G
Sbjct: 388 IDERVPDSLCGDVMRIQQVITNLMGNAIKFTDKGSVRLSLDLADESAERVLLRAEVSDTG 447

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+    +F  F        RR  G GLGL I +  +N   G +  +S     +T  
Sbjct: 448 IGIAEEQQPMLFQAFGQADSSVSRRFGGTGLGLVITKRLVNQMEGQIGFTSHQNQGSTFW 507

Query: 786 CRI 788
             +
Sbjct: 508 FTL 510


>gi|269962467|ref|ZP_06176816.1| sensor histidine kinase [Vibrio harveyi 1DA3]
 gi|269832763|gb|EEZ86873.1| sensor histidine kinase [Vibrio harveyi 1DA3]
          Length = 1143

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 162/414 (39%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L+      +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 656  RYLELFVFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGTRHTSSRV- 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE+AL + NE L +               
Sbjct: 715  RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANETLEERVRARTRELEQLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      S   K S ++E   
Sbjct: 775  LVAATQRSEHESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDSETQKLSTHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G + +N     +ND+L  +    +    +  I   +I  
Sbjct: 835  GAAE---DLIGDLLDISRLESGKLDVNVHGFAVNDVLANLNAEFSALAKQQGIEFTMI-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  +S  G  V L   R  G     V +NG  I E+ 
Sbjct: 890  PSSLMVKSDPKLLRRVVQNFLTNAFRYSPNG-KVALGVRRVQGQVRIDVWDNGMGIEEEK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 949  QQEIFEEFNRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWFGQGSVFSITL 1002



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFVFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKDANETLEE 759


>gi|228954943|ref|ZP_04116961.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228804764|gb|EEM51365.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 484

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PITSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHASTLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LVHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEADTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|150007677|ref|YP_001302420.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256839938|ref|ZP_05545447.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149936101|gb|ABR42798.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256738868|gb|EEU52193.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 364

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 129/237 (54%), Gaps = 7/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A+ E+     K++ +K+SF+ ++S+E+R PL  I+GF+ LL   + G L   + +Y+  
Sbjct: 127 KAMEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGEL---RQEYINL 183

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  ++ +LL +VND+LDLA +++G M  ++    L  L+ E   S   K+    + +   
Sbjct: 184 IQTNNELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVP-RGVALTYP 242

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +        +DR RL Q+    ++NA+ ++S GS +IL       + + SV + G  + E
Sbjct: 243 ASLDSFLLRSDRIRLKQVLGNFITNAIKYTSIGS-IILSYQAMENEVLLSVTDTGEGMSE 301

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++   VF+RF     R Q++G+GLGLSI ++ I   GG + +SS     +   C +P
Sbjct: 302 EIKLHVFDRFYKG--RNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568209|ref|ZP_04845620.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251842282|gb|EES70362.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1472

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ + 
Sbjct: 931  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELKERE--ELSPKGLQYVDLME 988

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 989  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 1048

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD+ +L  +   ++SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1049 DEPIMVWADKDKLSIVIRNVISNAFKFTPSGGSIYVTTGLTDDGKSCYVRVEDNGVGIPQ 1108

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1109 NKLSEIFERFSQGENANNPHYQGTGIGLALSKEIVNLHHGIIRAESPEGQGAVFIVEL 1166


>gi|190576411|ref|YP_001974256.1| putative transmembrane two component sensor histidine kinase /
            response regulator fusion protein [Stenotrophomonas
            maltophilia K279a]
 gi|190014333|emb|CAQ47980.1| putative transmembrane two component sensor histidine kinase /
            response regulator fusion protein [Stenotrophomonas
            maltophilia K279a]
          Length = 1148

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/493 (18%), Positives = 199/493 (40%), Gaps = 36/493 (7%)

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANKLPEQLNWKTWKENIFSVYK 383
            +  L+     F++ +    +     P +  + + L  ++  + E+   +++ E   S+ +
Sbjct: 516  DERLRAA--PFLDPYAERPSVAGGWPGHVHVGDLLALASRVVGERHARRSFFEQAQSLGR 573

Query: 384  ---SSETHKDTWHLPNGQTL---------HVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
               SS      W     + L          +++TS  RG  + + E + V  +   +   
Sbjct: 574  ELQSSAPADRPWVQFTERLLAASIGAASARLLLTSLLRGSGMDLGEVVAVLDEAGQELRF 633

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
              ++   T++++S GV+V  PD R+   N  ++ ++   +  L  G  + ++    +   
Sbjct: 634  NREILSTTLENISAGVSVVDPDMRLTAWNRRYQDMFGYPDGMLYVGRPVADLIRYNAERG 693

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
               +G D+   I       R       E       V+E     LP    + ++ ++TD  
Sbjct: 694  ELGEG-DIEVQINRRIGYMRAGSPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYK 752

Query: 550  RAERALTEKNEALRKA-----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
             AE+AL E NE L +             + K  F+  +S+++  PL     F   L+ S 
Sbjct: 753  HAEKALLEANETLEQRVAERSHEAEVAQQSKTRFLAAISHDVLQPLNAARLFASALRDS- 811

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               ++ +Q    E + AS      L++ +LD++ +DAG +        ++ L+ E+    
Sbjct: 812  -DHVSDEQKHLAERVDASLRAAEELLDGLLDVSRLDAGGLHPVIGEFDVSALMRELAAQY 870

Query: 659  ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                    +R+ + +  +     +DR+ L ++    L+NA+ ++ +G  ++L   +   +
Sbjct: 871  TPVAAGRGLRLDLFA--RPAWVRSDRRLLRRVLQNFLANALRYTRQG-RIVLAVRQRGDE 927

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                V + G  IPE   + +F+ F           +G+GLGLSI +    L    ++  S
Sbjct: 928  VELQVWDTGPGIPEHHMRQIFDEFHRYQQPFDWGEQGLGLGLSICQRISRLLDHRLNARS 987

Query: 777  SDEGVTTINCRIP 789
                 +  +  +P
Sbjct: 988  RVGKGSMFSIILP 1000



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 110/356 (30%), Gaps = 42/356 (11%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
            +++  E  +    E++    +     +     ++      +    +  +L   G     
Sbjct: 560 ARRSFFEQAQSLGRELQSSAPADRPWVQFTERLLAASIGAASARLLLTSLLRGSGMDLGE 619

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++  +++ D +  L   NR + +++      L   
Sbjct: 620 VVAVLDEAGQELRFNREILSTTLENISAGVSVVDPDMRLTAWNRRYQDMFGYPDGMLYVG 679

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +          ++   H       +G+ + +   + P 
Sbjct: 680 RPVADLIRYNAERGELGEG-DIEVQINRRIGYMRAGSPHVFERTRSDGKVIEMRGQALPG 738

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GG +  + ++T     E       +   +                         R   ++
Sbjct: 739 GGYVTSYNDITDYKHAEKALLEANETLEQ-------------------------RVAERS 773

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD---DERKSLQGTL-------E 519
            E  ++  +  R +AA         +   LFA+ +   D   DE+K L   +       E
Sbjct: 774 HEAEVAQQSKTRFLAAISHDVLQPLNAARLFASALRDSDHVSDEQKHLAERVDASLRAAE 833

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
            L D +L+ S +   +A  +   +   D     R L  +   +     ++      
Sbjct: 834 ELLDGLLDVSRL---DAGGLHPVIGEFDVSALMRELAAQYTPVAAGRGLRLDLFAR 886



 Score = 38.8 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 69/502 (13%), Positives = 153/502 (30%), Gaps = 63/502 (12%)

Query: 91   ETPEIIGQLHQRIDIPQTDTDLLSFENWL-KFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
            E P + G     + +     DLL+  + +    H  +     E+ +  G+  +L +    
Sbjct: 530  ERPSVAGGWPGHVHV----GDLLALASRVVGERHARR--SFFEQAQSLGR--ELQSSAPA 581

Query: 150  DCAI----KIEGRVSGSCAFLRILSLDGIYSE-------LAETTLKCKKLSNHISVFKVL 198
            D       +     S   A  R+L    +          +A      ++L  +  +    
Sbjct: 582  DRPWVQFTERLLAASIGAASARLLLTSLLRGSGMDLGEVVAVLDEAGQELRFNREILSTT 641

Query: 199  FDSLDFLVWHRDQAGDILWANISYKKN---------TETEGIVFQKAIGESRKLFKEEIK 249
             +++   V   D    +   N  Y+                    +   E  +L + +I+
Sbjct: 642  LENISAGVSVVDPDMRLTAWNRRYQDMFGYPDGMLYVGRPVADLIRYNAERGELGEGDIE 701

Query: 250  KRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHT 308
             ++       +     V      + K  ++  + L   G      D++        L   
Sbjct: 702  VQINRRIGYMRAGSPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKHAEKALLEA 761

Query: 309  YEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             E L        + +++   +   +S    L  I    L    +       LR ++ + +
Sbjct: 762  NETLEQ-----RVAERSHEAEVAQQSKTRFLAAISHDVLQPLNAARLFASALRDSDHVSD 816

Query: 368  QLNWKTWKENIFSVYKSSETHKDTW---HLPNGQTLHVIVTSNPRGGTIW-MFENLT--- 420
            +   K   E + +  +++E   D        +   LH ++        +  +    T   
Sbjct: 817  E--QKHLAERVDASLRAAEELLDGLLDVSRLDAGGLHPVIGEFDVSALMRELAAQYTPVA 874

Query: 421  ----VQVDLETK---YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
                +++DL  +     +  ++    + +       +   GRI L+        + +   
Sbjct: 875  AGRGLRLDLFARPAWVRSDRRLLRRVLQNFLANALRYTRQGRIVLAVRQRGDEVELQVWD 934

Query: 474  LSPG---THIRNIAATCSRYYNESDGWDL-------FAAIITSFDDERKSLQGTLELLS- 522
              PG    H+R I     RY    D  +            I+   D R + +  +   S 
Sbjct: 935  TGPGIPEHHMRQIFDEFHRYQQPFDWGEQGLGLGLSICQRISRLLDHRLNARSRVGKGSM 994

Query: 523  DSVLEYSIIPLPNAQTMLTFVN 544
             S++   + PLP    + T V 
Sbjct: 995  FSIILPRVAPLPGYTELATPVQ 1016


>gi|15614508|ref|NP_242811.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174563|dbj|BAB05664.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 462

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 115/250 (46%), Gaps = 8/250 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +  +   +    + +L + +E +  F+  VS+ELR+PL+ + G+ + ++   + 
Sbjct: 216 TRSRKDEIGQLAESFNTLSSSLERVEEKRREFLADVSHELRTPLSYMKGYAEGVEEGVID 275

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
                 S+ +  I   +  L  LVND+LDLA ++     +    I    L+ EV +    
Sbjct: 276 P-----SKGLSIIQKEANRLERLVNDLLDLAQLEGESYVMKDEPIAFAQLVYEVVEQFRY 330

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              +  +++ +  D  +     D  R+ Q+   +L NA+ ++ + +T+ L   R+     
Sbjct: 331 LAAQKRLQVHLDLDEDVI-ISGDPDRIEQVIRNLLDNAIKYAHEETTISLTIGREGSRAQ 389

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F + + G  IPED    VF RF     +   ++ G GLGL+I    I  HGG + I+S +
Sbjct: 390 FILSDQGIGIPEDKLALVFERFYRVNKSRSRKKGGTGLGLAIASQIIKKHGGTIDITSQE 449

Query: 779 EGVTTINCRI 788
              TT+   +
Sbjct: 450 LKGTTVTITL 459


>gi|301058203|ref|ZP_07199253.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300447705|gb|EFK11420.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 912

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 122/260 (46%), Gaps = 6/260 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +T    +   +     + L   NE L++ D++KN F+  VS+ELR+PLT++    ++L +
Sbjct: 650 ETQQIIIYSRELESTTKDLAAANERLKELDQLKNEFISTVSHELRTPLTSVRALAEILHS 709

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +     +  Q  +   I   S  L  L++D+L+   + +G  +  ++   + +++ +   
Sbjct: 710 NPDLDADRYQK-FTGIIITESERLSRLIDDVLNFQKIKSGKTQWEFTETDMGEIIEDSVV 768

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSKGSTVILKAAR 714
           S    +H+N+I + ++   +      DR RL+Q+   +LSNA+ F  + +G  + +  +R
Sbjct: 769 STGQLVHDNHIDLTLLLPEEKVYASVDRDRLIQVMINLLSNAVKFCDTDQG-RIEIGLSR 827

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
           +      +VK+NG  I     + +F  F       +R+  G G+GL+I    I  H G +
Sbjct: 828 EQNLIRVTVKDNGIGISAADQEFIFEEFRQIKDSSKRKPFGTGVGLTISRHIIEAHKGKI 887

Query: 773 SISSSDEGVTTINCRIPSKE 792
            + S           IP  +
Sbjct: 888 WVESEPGRGAKFVFTIPVVQ 907


>gi|228960940|ref|ZP_04122573.1| hypothetical protein bthur0005_43950 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798836|gb|EEM45816.1| hypothetical protein bthur0005_43950 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 484

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVAVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|226312005|ref|YP_002771899.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226094953|dbj|BAH43395.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 594

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 158/396 (39%), Gaps = 48/396 (12%)

Query: 403 IVTSNPRGGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           I T +  G     F  +  ++  L    +   +     +  + +GV +   +G++ ++NP
Sbjct: 231 IRTQDETGELAASFNTMASKLNQLVDALSKEKEQLASVLRSMVDGVVMIDANGKLAVTNP 290

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                 +  +   S                     +  +  ++ +  +  + +      +
Sbjct: 291 PAERFLRDWDFEHSD---------------EPVPLFPFYQQVLQTGQEVTEDIP-----V 330

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
              +    ++PL +   +   V V   +  ER L          D+++N FV +VS+ELR
Sbjct: 331 QGRIWSVVMVPLNDKDQIRGAVAVLRDITQERKL----------DKMRNDFVANVSHELR 380

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL+ + G+++ +    + +   +  +  + I   S  +  LVN++L LA ++AG ++L 
Sbjct: 381 TPLSMLQGYSEAIVDDIVAT-PEEHKELAQIIYDESARMTKLVNELLSLARMEAGHVELF 439

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             T+ L   L  +++       E  I + +         + D  R+ Q+ + ++ NA+  
Sbjct: 440 QETMELRPYLERIQRKFTNLAREREIHLFLEISTTHTHVLIDPDRMEQVLTNLIDNALRH 499

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---------GQRR 752
           +  G +V ++A R +   +  + + GS IP++    VF RF               G   
Sbjct: 500 TPSGGSVTIRA-RGDKTLLVEISDTGSGIPQEDLPFVFERFYKADKARTRGRLGGTGLGL 558

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 +I ++ +  HGG +++ S     TT    +
Sbjct: 559 ------AIAKNLVEAHGGTINVQSKLGEGTTFTIAL 588



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 99/323 (30%), Gaps = 51/323 (15%)

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI------TVNDQLTHTYEILH 313
           +   ET   +  G+  +   +R  +  GE   + +            ++ +      +L 
Sbjct: 211 RQMKETAHRIAEGDFHAEIPIRTQDETGELAASFNTMASKLNQLVDALSKEKEQLASVLR 270

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           ++   + + D N  L   N            FL          +F  S   +P    ++ 
Sbjct: 271 SMVDGVVMIDANGKLAVTNPPAER-------FLRD-------WDFEHSDEPVPLFPFYQQ 316

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTIWMFENLTVQVDLETKY 429
             +    V +             G+   V++          G + +  ++T +  L+   
Sbjct: 317 VLQTGQEVTEDIPVQ--------GRIWSVVMVPLNDKDQIRGAVAVLRDITQERKLDKMR 368

Query: 430 NT-------LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           N         ++     +   SE +        I  +    + L +   +  +  T + N
Sbjct: 369 NDFVANVSHELRTPLSMLQGYSEAIV-----DDIVATPEEHKELAQIIYDESARMTKLVN 423

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
              + +R   E+   +LF   +    + R  L+      ++   E  I       T  T 
Sbjct: 424 ELLSLARM--EAGHVELFQETM----ELRPYLERIQRKFTNLAREREIHLFLEISTTHTH 477

Query: 543 VNVTDSVRAERALTEKNEALRKA 565
           V + D  R E+ LT   +   + 
Sbjct: 478 V-LIDPDRMEQVLTNLIDNALRH 499


>gi|212712306|ref|ZP_03320434.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
 gi|212685052|gb|EEB44580.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
          Length = 928

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 169/393 (43%), Gaps = 42/393 (10%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFG-PDGRIKLSNPA 462
           G  I+    L  +  LE   NT ++++       + +     G+ +    DG   LSN  
Sbjct: 310 GALIFFLIWLLERRMLEPAANTAIRLEEHEQFNHKIVASAPVGIIILRLSDGGNILSN-- 367

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                               +A    R  N+ D   +   I      ++ S    +   +
Sbjct: 368 -------------------ELAHNYFRLLNDDDKQRILTII-----RQKSSNYIDVVATN 403

Query: 523 DSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + L+ S +          +   ++++  V+ E++L +  +A  +A++ K+ F+  VS+E
Sbjct: 404 GTHLQISFVNSRYQNEDVAICVLIDISIRVQMEKSLQDVADAAEQANQAKSMFLATVSHE 463

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  IIG  +LL+  +   L+ K  + V  +  SS++LL +++DILD + +++  +K
Sbjct: 464 LRTPLYGIIGNIELLQRYE---LSDKAVRLVSTMDNSSSLLLQIISDILDFSKIESKQLK 520

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
           +        ++   V  +      +  + +    +  +   + +D  RL Q+ S I++N+
Sbjct: 521 IENKLFNCRNVFAYVLANYVPLATKKQVSLYSYIEPNIPDLMLSDPVRLQQVISNIVNNS 580

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLG 757
           + F+  G  V+L   +D       VK++G  +   +   +F+ F          +G GLG
Sbjct: 581 IKFTDSG-FVMLHVWKDENYLKIEVKDSGIGMTPAVVMQLFDPFFQVYDQNNGHKGTGLG 639

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I E  INL  G +++ S     +    RIP 
Sbjct: 640 LAICEKLINLMDGDIAVDSQAGLGSRFTIRIPL 672


>gi|323694521|ref|ZP_08108689.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum
            WAL-14673]
 gi|323501435|gb|EGB17329.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum
            WAL-14673]
          Length = 1312

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 119/734 (16%), Positives = 260/734 (35%), Gaps = 77/734 (10%)

Query: 116  ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR-------I 168
            E WL+  +  +  + T +     ++F  +             ++ GS  ++        I
Sbjct: 451  ETWLRMGYIHEEDQKTYR-----KAFADIDNGSLQEEFSARAKIPGSDRWIWMNFRCNVI 505

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
                G       T     +       F  +        W  D     +            
Sbjct: 506  CDDTGRAIRTICTAENIDRYKELEQTFFEVMRQNGVTSWKYDIKRQAVLEGNKVVSAYGL 565

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMI------SSSALEKNFCETVSTLEHGNNKSYKI--V 280
                 Q+ + E  KLF  E   +             E +    V   + G     ++   
Sbjct: 566  HAHQIQEGLIEG-KLFHPEDAPKARLLLQHIREGEREVSGIFRVFDKKAGEYSWIRLSYT 624

Query: 281  RVLNSFG----EAGIAIDVSKEITVNDQLTHTY---------EIL--------HNLTVAI 319
             ++++ G      G A+D+S+EI    +              + L         N+   +
Sbjct: 625  VLVDADGIRRTALGSAMDISREIQHRQKFEEMLLLHKNKKNLDTLLTGYCSLKENIIKGL 684

Query: 320  AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE---------QLN 370
              F    + Q +     E +      +       + L+   +   L +          + 
Sbjct: 685  NDFSGQDFGQRYGSVRDEFFTRFADAIVDEKERSQFLDTYLAKPLLADFAKGISNHSNIY 744

Query: 371  WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN 430
            +  +++    +Y   + + DT   P+   +   +T +     +   + +   V+ E  + 
Sbjct: 745  YCKFRDEDEGLY--VQVNVDTMLAPDKNDVIGFLTVSDMSQQVIAEKIINRVVEQEFDFI 802

Query: 431  TLVKVQGETIDHLSEGVAVFGPDGR-----IKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             L+ +    ID + + +  +    R     +++ N     + + E    S    I+ I  
Sbjct: 803  ALIDIASGNIDRIIDRMGEYDHPARGENYDMRVGNGLLTYVVEEEREACSNTNTIQGILK 862

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                  N+   +    +I+     +R+    T     D+  +  +      +T +T   +
Sbjct: 863  GLGEAGND---YQTAYSIVNPKTGKRERKLWTFSYFDDTKKKVILT-----RTDMTATYL 914

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             +  + +R L+E  E  + A++ K+ F+  +S+++R+P+  IIG T+L  +    S   +
Sbjct: 915  KEQEQ-QRNLSEALEFAKAANKAKSDFLAAMSHDIRTPMNAIIGMTELALSDL--SDREQ 971

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              +    I +SS  L++++NDILD++ +++G  ++        +   ++ + IA      
Sbjct: 972  IHESFTTIKSSSAHLISIINDILDISRIESGKAEMLQEQFSSREEHQKIVKRIAPLAEAK 1031

Query: 666  NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDF 719
             +      D +    + D  RL ++   +LSNA+ F+ +G  V            D+   
Sbjct: 1032 GLVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIKFTPEGGRVDYSFAELPCCRPDHILC 1091

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +V + G  + E     +F  F    ++  G   G GLG+SIV+S + L GG + + S 
Sbjct: 1092 RITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVEGTGLGMSIVKSTVELSGGSIEVESE 1151

Query: 778  DEGVTTINCRIPSK 791
                +    +IP +
Sbjct: 1152 PGRGSKFIVKIPIR 1165


>gi|312889061|ref|ZP_07748621.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311298579|gb|EFQ75688.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 581

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 158/380 (41%), Gaps = 19/380 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           ++ +EN       + K           + ++++ +  F  +  I   NP    L   EE 
Sbjct: 218 LFAYEN-----SSQAKIKQEKLRIETIVKNVTDAIIGFDENELILFINPVAVKLLGVEEK 272

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +        I ++     +++D +          +D +  L G L   +  + E   I 
Sbjct: 273 DI--------IGSSTEEVASQNDLFRTLTDKTEDLNDLKLYLDGELSYFTKELFE---IG 321

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +PN  +     +     +    L +      K DE K +F+  +S+EL++P++++     
Sbjct: 322 VPNEGSTEEHKSSLKR-KGYFILLKNITRFYKLDEAKTNFIATISHELKTPISSLKMSLK 380

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L++  + G++   Q + +  I+  S  LL + +++LD+  V+ G + LN+ +    +++N
Sbjct: 381 LMEDKRYGTVTKSQKELINNINDDSNRLLKITSELLDMGQVETGKLLLNFGSTDPKNIIN 440

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
              ++I     +  I + V     +    AD  +   +    L+NA+ +S + S + +  
Sbjct: 441 YTCEAIRFIAEQKEITLHVKCSKNVPEVWADPDKTAWVLINFLTNAIKYSPQSSIIDVTV 500

Query: 713 ARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGG 770
            + + G   FSVK+ G  I E     +F R+           G GLGL+I + FI   GG
Sbjct: 501 KKSSLGRIEFSVKDYGKGIEEIYLPRIFERYFKVPGSEFSVPGTGLGLAIAKDFIEAQGG 560

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + + S     +     +P+
Sbjct: 561 EIGVESKIGEGSKFFFLLPT 580



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 5/167 (2%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
            Y +V   N       A + S +  +  +      I+ N+T AI  FD+N  + F N   
Sbjct: 204 FYSLVDAFNQMAAKLFAYENSSQAKIKQEKLRIETIVKNVTDAIIGFDENELILFINPVA 263

Query: 336 VELWEIDLAFLATNPSND--ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           V+L  ++   +  + + +     +  R+     E LN      +    Y + E  +    
Sbjct: 264 VKLLGVEEKDIIGSSTEEVASQNDLFRTLTDKTEDLNDLKLYLDGELSYFTKELFEIG-- 321

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL-ETKYNTLVKVQGET 439
           +PN  +     +S  R G   + +N+T    L E K N +  +  E 
Sbjct: 322 VPNEGSTEEHKSSLKRKGYFILLKNITRFYKLDEAKTNFIATISHEL 368


>gi|254413515|ref|ZP_05027285.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179622|gb|EDX74616.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 501

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 182/443 (41%), Gaps = 18/443 (4%)

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLP--------NGQTLHVIVTSNPRGGTI--WM 415
           P+ +    W +       +++   + W +P        +  TL     + P G  +    
Sbjct: 61  PDLVLMDIWLQGDMDGIWTAQQIWNKWQIPVIYLTGHSDKITLKRAKVTAPFGYILKPVN 120

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            + L+V +++  +     +     +  + +GV V   D RI+  N     L +  +   +
Sbjct: 121 EQQLSVAIEVALQRYKRDQFLSAVLWGIDDGVIVVDQDCRIQCMNQVAELLTE-WQFTDA 179

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLP 534
               ++++         +     +  A       +R      +       V+  S  P+ 
Sbjct: 180 KNRELKDVFQIIDVQTQQPVNNSVTLAFKEDRLVDRTDDHVLITKTGQQIVIADSAAPIR 239

Query: 535 NAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           + Q      +L F ++ D  +AE AL ++    ++ ++ +  F+  VS+E R+PL+ I  
Sbjct: 240 DNQGDLAGVVLVFQDMRDRKQAEAALRQQLAQEQQLNQFQQQFIHTVSHEYRTPLSIIQA 299

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            T L++T      +  +    + I  +   ++ L+ D+L     +AG + L+   + +N 
Sbjct: 300 STFLIETDSSSVRSENKRVNCQRIKQAVKYMVGLLEDVLTFGQAEAGQLLLDPMPLDVNL 359

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
              ++         +   +I   S G   +   D++ L  I   +L+NA+ +S + S+V 
Sbjct: 360 FCQQLIDEYQLIASD-QAKITWSSCGTSQTAYLDQKILQLIVRNLLTNALKYSPENSSVY 418

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           L    ++      VK+NG  IP +    +F  F   ++ G  RG G+GL+IV+  ++LHG
Sbjct: 419 LTLTCEDDRLTVEVKDNGIGIPPEDQPCIFEPFRRASNTGTVRGSGMGLAIVKKAVDLHG 478

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G +S+ S     T     +P  E
Sbjct: 479 GTLSVESVLGIGTRFTVVLPFPE 501


>gi|170741139|ref|YP_001769794.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168195413|gb|ACA17360.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 1000

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 106/504 (21%), Positives = 201/504 (39%), Gaps = 41/504 (8%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
               +L  L + I +      L   NR+ + L + + A         E L     A  L 
Sbjct: 510 EVARVLDRLPIGILVHQGEEVL-LANRALLCLADYESA---------EALTAAGGAGSLF 559

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV--IVTSNPRGG---TIWMFENLTV 421
              +  +              H        G+ L V  ++T    GG   ++     L  
Sbjct: 560 RGRDPASLAVGEGDP-AGGADHPVVLATRTGEALPVAAVLTPVEWGGAPASLLALRRLPE 618

Query: 422 Q--------VDLETKYNTL-VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +         +LE       ++     +D +++GV      GR+   N    +L+  E  
Sbjct: 619 EDPARHLRAAELERARQEARLRESEAVLDAVTDGVVTLDERGRVIALNKGAAALFGHEPR 678

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +S            +  + +     + AA+  +   E  S +   E   + +L  ++ P
Sbjct: 679 EVS--------GEDLTVLFAQDGRPAIRAALERARAGEPASTEVAAE-GGEPILALTLAP 729

Query: 533 LPNAQTMLTF---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           L   +         +V+ + R E  L     A   A   K+ F+  +S+E+R+PL  I+G
Sbjct: 730 LAQEEPRRFSVLLRDVSAARRTEAELLRAKRAAEAASSQKSDFLATISHEIRTPLNAILG 789

Query: 590 FTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           FT+++   + G + N +   Y+  I +S   +++LV D+LDLA ++AG + L+++ +VLN
Sbjct: 790 FTEVMMEEQFGPIGNERYRDYLRDIRSSGEHVVSLVTDLLDLAKIEAGHLDLHFTGVVLN 849

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           DL+      +  +     + ++      L   + D++ L Q    +++NA+ F+  G  V
Sbjct: 850 DLVGASVSLMQPQAARQRVVVRTSFANGLRPVLGDQRSLRQAALNLIANAIKFTDAGGQV 909

Query: 709 ILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           I+  A  D G     V++ G  +  D  ++    F   A    R  RG GLGL + ++ +
Sbjct: 910 IVSTAMTDRGGVALRVRDTGIGMTPDEVETALQPFRQVATAQNRRGRGTGLGLPLTKALV 969

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             + G + +SS     T +    P
Sbjct: 970 EANRGTLRVSSRKHEGTLVEVLFP 993



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 82/300 (27%), Gaps = 41/300 (13%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           LA    +    +  ++    + D L   +       ++L AN +     + E      A 
Sbjct: 497 LARAPERGPSTAGEVA---RVLDRLPIGILVHQGE-EVLLANRALLCLADYESAEALTAA 552

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAG------- 290
           G +  LF+      +           +    L     ++  +  VL      G       
Sbjct: 553 GGAGSLFRGRDPASLAVGEGDPAGGADHPVVLATRTGEALPVAAVLTPVEWGGAPASLLA 612

Query: 291 --------IAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
                    A  +     +      +L  +  +L  +T  +   D+   +   N+    L
Sbjct: 613 LRRLPEEDPARHLRAAELERARQEARLRESEAVLDAVTDGVVTLDERGRVIALNKGAAAL 672

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
           +  +   ++         +  R A +                  ++ E          G+
Sbjct: 673 FGHEPREVSGEDLTVLFAQDGRPAIR------------AALERARAGEPASTEVAAEGGE 720

Query: 399 -----TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                TL  +    PR  ++ +  +++     E +     +         S+ +A    +
Sbjct: 721 PILALTLAPLAQEEPRRFSVLL-RDVSAARRTEAELLRAKRAAEAASSQKSDFLATISHE 779


>gi|218231212|ref|YP_002369468.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218159169|gb|ACK59161.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 484

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PITSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVIVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|156972532|ref|YP_001443439.1| sensor histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156524126|gb|ABU69212.1| hypothetical protein VIBHAR_00164 [Vibrio harveyi ATCC BAA-1116]
          Length = 1177

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 162/414 (39%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 630  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 689

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L+      +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 690  RYLELFVFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGTRHTSSRV- 748

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE+AL + NE L +               
Sbjct: 749  RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANETLEERVRARTRELEQLNKQ 808

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      S   K S ++E   
Sbjct: 809  LVAATQRSEHESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDSETQKLSTHIESAL 868

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G + +N     +ND+L  +    +    +  I   +I  
Sbjct: 869  GAAE---DLIGDLLDISRLESGKLDVNVHGFAVNDVLANLNTEFSALAKQQGIEFTMI-- 923

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  +S  G  V L   R  G     V +NG  I E+ 
Sbjct: 924  PSSLMVKSDPKLLRRVVQNFLTNAFRYSPSG-KVALGVRRVQGRVRIDVWDNGMGIEEEK 982

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 983  QQEIFEEFNRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWFGKGSVFSITL 1036



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 650 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFVFPPGLIQVGRPIA 709

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 710 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 768

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 769 MSFTDITVFRDAEQALKDANETLEE 793


>gi|322696596|gb|EFY88386.1| putative histidine kinase HHK2p [Metarhizium acridum CQMa 102]
          Length = 2074

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 20/248 (8%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1405 LKEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1461

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  + +  + ++V
Sbjct: 1462 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLVEADVPAWV 1521

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNGDFIFSVKNNGSSI 730
              D+ R+ Q+   ++ NA+ F+++G              +    +     F++ + G   
Sbjct: 1522 KGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRVYTEEDPVVCNENEIMLQFAITDTGRGF 1581

Query: 731  PEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--- 785
             ++  + +F  F     +   Q  G GLGL I    + LHGG +  ++     +T     
Sbjct: 1582 TKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAIPGKGSTFTFTA 1641

Query: 786  -CRIPSKE 792
               +PS E
Sbjct: 1642 RFTLPSPE 1649


>gi|311031670|ref|ZP_07709760.1| multi-sensor hybrid histidine kinase [Bacillus sp. m3-13]
 gi|311032342|ref|ZP_07710432.1| multi-sensor hybrid histidine kinase [Bacillus sp. m3-13]
          Length = 549

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 122/258 (47%), Gaps = 3/258 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +T+            +  L  +   + +  + K +F+  +S+ELR+PL +IIG++ +L
Sbjct: 291 NTETLEVANLHLKENERKLRLIIEKNEVERESKTKTNFLAMISHELRTPLNSIIGYSQVL 350

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG--IMKLNYSTIVLNDLLN 652
           ++ +   L  KQ   +  I +SS  LL L+N+IL+L  +D     +K N   I + D + 
Sbjct: 351 ESDQKDPLTDKQKSRLAKILSSSRHLLQLINNILELIRIDTNPETIKTNVKPIRIKDAVW 410

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +   +++    E  I + +  D +  +   D  R  Q+   +L+NA+ ++ +  TV L  
Sbjct: 411 DSLHAVSNNAKEKGISLYIEKDVEDITIEIDPIRFQQVLVNLLNNAIKYNKENGTVTLYW 470

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGH 771
             D       VK+ G  IP+    ++F  F    H      G G+GL++V+  +    G 
Sbjct: 471 RVDGRYLAIFVKDTGIGIPQSHHDNIFEPFYRVNHAIPGVEGTGIGLTLVKQNVLEMKGT 530

Query: 772 VSISSSDEGVTTINCRIP 789
           V +SS +   +T   ++P
Sbjct: 531 VGVSSIEGTGSTFWVKVP 548


>gi|295688464|ref|YP_003592157.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430367|gb|ADG09539.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 696

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 157/380 (41%), Gaps = 18/380 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           L  ++  E    T  +      D  ++ + +   +GR    N A+ ++       L    
Sbjct: 178 LRARLSAEQAMETA-RNLSSFFDVSADLLCIRDMEGRFVKVNQAWETVLGHPVEVLEGSG 236

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +  + A        +         +  F +  +   GT   L                 
Sbjct: 237 LLPLLHADDLESTRANMQRAEADGEVNGFVNRYRRADGTYCQLEWRARRC------GDLV 290

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                +VT+ +R E  + E   A   A++ KN F+ ++S+E+R+PL  +IG    L  + 
Sbjct: 291 FGVARDVTERLRIEAEMAEARRAAETANKAKNDFLANMSHEIRTPLNGVIGIAAALGET- 349

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L  +Q++ V+ I  S   L  LV+DILD++ ++AG M +      L+ +L+ +    
Sbjct: 350 --ALTPRQAEMVDLIRRSGETLERLVSDILDVSKIEAGQMTIQTQAFDLDGVLDGLLDVT 407

Query: 659 ATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA-RD 715
             +  E  + ++V     + G F+ D  R+ Q+ S ++SNA+ F+ +G  TV +    RD
Sbjct: 408 RLRAKEKGVGVRVERGPSVSGGFLGDSVRIGQVLSNLMSNAVKFTDRGEVTVRIDVEDRD 467

Query: 716 NGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           +G        V++ G        + +F RF        RR  G GLGLSI  + + + GG
Sbjct: 468 DGQASLLCVEVEDTGVGFDAAKGEMIFQRFSQADSTITRRFGGSGLGLSISRTLVEMMGG 527

Query: 771 HVSISSSDEGVTTINCRIPS 790
            ++  S     +     +P 
Sbjct: 528 AITARSKPGSGSLFRVVLPL 547


>gi|255036993|ref|YP_003087614.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949749|gb|ACT94449.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 854

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 13/280 (4%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           ++G+++ L   +L +  +    A  + T +  ++  R  + L E  E        K  F+
Sbjct: 303 VEGSVDHLEWIMLGFFFLTAVMAYFIFTDIAKSNDYR--QQLEEAKEEAEYHSMAKQRFL 360

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+PL +IIG+ + LK          + Q +E + ++S  LL LVN++LD + +
Sbjct: 361 ANMSHEIRTPLQSIIGYAEALKNE-----EKPRKQDLETLHSASEHLLYLVNEVLDYSRI 415

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
            +           +N LLNEV Q +        + +++ +  K       D  RL Q+  
Sbjct: 416 ISDRFTFEERVFSINPLLNEVVQVLRPTALSKGLILRLENSLKPNLYLHGDPFRLRQVLY 475

Query: 693 KILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
            +L+NA+ F+  G  V+     + G+     + + + G  +  D  + +FN+F       
Sbjct: 476 NLLTNAIKFTENGEVVLKVTGHETGNAAKIEYQISDTGIGLSADQVERIFNQFEQADPSI 535

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +  G GLGLSIV++ +    G++ ++S     TT    
Sbjct: 536 QRKYGGTGLGLSIVKALVEGMSGNIHVTSKPGEGTTFFVT 575


>gi|302878851|ref|YP_003847415.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302581640|gb|ADL55651.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 942

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 105/657 (15%), Positives = 217/657 (33%), Gaps = 57/657 (8%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +L L  +Y            L      F  L +S    ++ +D+   I + + +   
Sbjct: 305 VISVLLLGMLYRGERRRREAVDALQILNRDFMTLLESTTDFIYFKDRDSRIRFCSQTLAN 364

Query: 225 NTETEGIVFQKAIG-ESRKLFKEEIK----KRMISSSALEKNFCETVSTLEHGNNKSYKI 279
            T  +   +++ IG    ++F E++     +  +            +        +   +
Sbjct: 365 ITGHQN--WREMIGKHDLEIFPEDVAKIYYEEELPLFNSGSPILNRIDPYYDSAGRQGWV 422

Query: 280 V---------RVLNSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQNR 326
                           G  GI+ D+S     EI++            +  V IA    + 
Sbjct: 423 STNKWPVFAEDGKTVTGIFGISRDISDFKRAEISLRLSEARYRATFDHAAVGIAQVSTDG 482

Query: 327 YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK-ENIFSVYKSS 385
                NR F  +     + + +         F       PE L     + + + S     
Sbjct: 483 VFLEINRVFCNIIGYTQSEVLSQH-------FSFGQITYPEDLASDMAQVQRLLSGADDH 535

Query: 386 ETHKDTWHLPNGQTLHVIVT----SNPRGGTIWMFE---NLTVQVDLETKYNTLVKVQGE 438
              +  +   +G  + V ++     +  G  ++      ++T +   E +          
Sbjct: 536 YEMEKRYIRKDGGIVWVNLSVALLRDTEGLALYFISSVVDITQRKQAEAQLLESEAHLRA 595

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I++    + +    G +   NPA   + + +      G  +  + A   R         
Sbjct: 596 IINNEPACIKIVDDQGILIQMNPAGLEMIEADSLAQVAGRPVTGVIAPEYREAFLQMHKR 655

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TMLTFVNVTDSVRAERAL 555
           + A        E   L+G        +LE   +P+        +    ++T+  R E AL
Sbjct: 656 VIAGESMQLKFEVLGLKG-----GRRMLETHAVPMEAYGKRVQLAVTRDITERQRIEDAL 710

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
              N  L         F   VS+++R PL  + G   LL+ S    L+      + +   
Sbjct: 711 KRSNADL-------ERFAYSVSHDMRQPLRAVSGHLQLLQHSLKEQLSEDDLLNMNFALD 763

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  + +++  +LD + V  G        I    +L+E    +   + E+  ++     G
Sbjct: 764 GAKRMDSMIVSLLDYSRV--GRKTGEKQGIESRAVLDEALSFLQPMIQESAAQVTFQ--G 819

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPED 733
                 A R  L ++F  ++ NA+ F   G    + +K+      +  SVK++G  I   
Sbjct: 820 VWPQLFASRDELTRLFQNLIGNAIKFHESGQAPLIEIKSVVAKAMWRVSVKDHGVGIDPK 879

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
               +F  F     R    G G+GL++    +  H G + + S+     +T    +P
Sbjct: 880 QADRLFQFFSRLQSRTIFEGTGMGLALCRRIVEHHDGRIWVESAGVGSGSTFIFELP 936


>gi|77456275|ref|YP_345780.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens
           Pf0-1]
 gi|77380278|gb|ABA71791.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 596

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 149/357 (41%), Gaps = 21/357 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    GR++  NP  +     + +R   G               
Sbjct: 258 QQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDSDRFGEG---------LGTALQ 308

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +       ++     ER     ++E+  +  +L YS+ P+ + Q  +    +      
Sbjct: 309 RPELDAQLQLVLRGGTLERAPEDLSIEVDGESRLLTYSLTPVSHTQGHILGAVMVLHDVT 368

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     L +        S++S  ++
Sbjct: 369 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLFRERAKFPEESRESDLLD 419

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +   +G+ KL  +   + +LL   +   A    +  + + V
Sbjct: 420 TVNEEMQRLMQLINDLLNFSRYQSGLQKLTLAPCSIEELLERARLRFADSAAQKGVALNV 479

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            + G L    AD+ +L ++   ++ NA+  +++   + L+A R     I SV++NG  I 
Sbjct: 480 EAQGSLPRLQADQAQLDRVLDNLIDNALRHTARDGLIRLQARRHGERVIISVEDNGEGIA 539

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +
Sbjct: 540 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMAL 594



 Score = 38.0 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQL---THTYEILHNLTVAIAIFDQNRYLQFHN 332
           + +I  +   FG    A+   +   V++ L        +L ++   + + D+   L+  N
Sbjct: 226 AMEINLLTRRFGLMAEALREHQATNVDELLAGQQRLQAVLDSIDDGLLMIDRQGRLEHLN 285

Query: 333 RSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW 392
                    D         +D   E L +A + PE        + +          +D  
Sbjct: 286 PVAQRQLGWD---------SDRFGEGLGTALQRPEL---DAQLQLVLRGGTLERAPEDLS 333

Query: 393 HLPNGQ----TLHVIVTSNPRG---GTIWMFENLTVQVDLET 427
              +G+    T  +   S+ +G   G + +  ++T Q   E 
Sbjct: 334 IEVDGESRLLTYSLTPVSHTQGHILGAVMVLHDVTEQRAFER 375


>gi|330895938|gb|EGH28222.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 993

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 157/370 (42%), Gaps = 9/370 (2%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATC 487
            N  +  +   +D +   + V    GR+   N ++   L  + E          N+    
Sbjct: 576 LNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 635

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 +D   L       F D    L G    +    + +          +  ++++T+
Sbjct: 636 LAEQMHTDYLTLLENHQPVFSDRTIELPGKRMDVWQWTVPFFAADGQLQGLLGGWIDITE 695

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  + L+  +   L    S
Sbjct: 696 RKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLE-LECEQALRLGKIPS 754

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L + V +  + +  E  +
Sbjct: 755 QGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQAGEKGV 814

Query: 668 RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD---FIFS 722
            +++   G+  G +  D  RL Q+   +L NA+ F+ +G+ V  L    D+ +       
Sbjct: 815 ELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPESTRVRIG 874

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           ++++G  I     + VF  F   +        G GLGLSI    + L  G +S+ S    
Sbjct: 875 IQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDISLHSEPGK 934

Query: 781 VTTINCRIPS 790
            T +   +P 
Sbjct: 935 GTLVTIDLPL 944



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +     ++L++ ++    L D +   ++ RD  G ++  N SY++
Sbjct: 553 LVSLTWSSRLKVQIRQRQRVQRQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQ 612

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                 L    + ++M +         +      +    G        
Sbjct: 613 SLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLTLLENHQPVFSDRTIELPGKRMDVWQW 672

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL     +      A + F
Sbjct: 673 TVPFFAADGQLQGLLGGWIDITERKQLEQQLQEAMRLADQANEAKSAF 720



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFL 359
           +NDQL   + +L  +   I + D    L   NRS+ +   I    +     ++  L+   
Sbjct: 576 LNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 635

Query: 360 RSANKLPEQLNWKTWKENIFSVY-----KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            +        ++ T  EN   V+     +      D W      T+          G + 
Sbjct: 636 LAEQM---HTDYLTLLENHQPVFSDRTIELPGKRMDVWQW----TVPFFAADGQLQGLLG 688

Query: 415 MFENLTVQVDLETKYNTLVKVQGET 439
            + ++T +  LE +    +++  + 
Sbjct: 689 GWIDITERKQLEQQLQEAMRLADQA 713


>gi|158319155|ref|YP_001511662.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
 gi|158139354|gb|ABW17666.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
          Length = 463

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 150/321 (46%), Gaps = 9/321 (2%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSII 531
           L   T +R +    +       G+     +I+SF      K++ G L+ +++S  + +  
Sbjct: 148 LRFITSLREVNRDINEIAFLFIGFGALVILISSFVGIFLTKTITGPLKNVTESAEKMA-- 205

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            L +           +  +    L      + K +E+KN F+  VS+ELR+PLT+I G+ 
Sbjct: 206 -LGDYSIRSVKTYDDEIGKLSDTLNYMASEIVKKEELKNDFISSVSHELRTPLTSIKGWA 264

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             LK S         +  +  I   S  L N+V ++LD +   +G + L    + +N+++
Sbjct: 265 ITLKHSPDDK--EILADGLNIIETESDRLANMVEELLDFSKFVSGKISLEKKEVNINEII 322

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           + +K+ +  +   +NI+ +VI++  +  F +D  RL Q+F  +L NA  F+  G +V L 
Sbjct: 323 DHIKKQLTPRAMRDNIKFEVIAEEPMPIFCSDGNRLKQVFINVLDNAFKFTPAGGSVSLV 382

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           A+  +G+FIF++K+ G  I  +    V  +F        +   G+GLSI +  I+L  G 
Sbjct: 383 ASYRDGNFIFNIKDTGHGISAEDLPRVKEKFYKGRTSLSQN--GIGLSICDEIISLMKGT 440

Query: 772 VSISSSDEGVTTINCRIPSKE 792
             I S     T I   +P  E
Sbjct: 441 FEIKSQLNKGTEIIITLPLGE 461


>gi|315125702|ref|YP_004067705.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           sp. SM9913]
 gi|315014216|gb|ADT67554.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           sp. SM9913]
          Length = 927

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 119/248 (47%), Gaps = 15/248 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ +   KA E K +F+  +S+E+R+P+  +IG  DLL+ ++   L+  Q +    I
Sbjct: 265 ELEKQTQKALKASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTE---LDGAQQRLSTII 321

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL++++DILD + ++AG + ++ +   + D L EV + +++     ++ + +  
Sbjct: 322 RESAFSLLSILDDILDFSKIEAGKLNIDPTPFSVADTLEEVAKVLSSVAKNRHLELDLSI 381

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG-----DFIFSV 723
              +  + + D  R+ Q+   + SNA+ F+S        V +     +         F V
Sbjct: 382 APDIPNNLMGDSVRVRQVLYNLCSNAIKFTSTNGSTQGRVKISVEVAHNTADHFTLRFCV 441

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +NG  + +   + +F+ F        R   G GLGLSI +S   L  G + ++S +   
Sbjct: 442 VDNGKGMSQSQLRKIFSPFTQAESSITREFGGTGLGLSICKSLTELMLGTIHVTSHEGIG 501

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 502 SEFTVELP 509


>gi|302390527|ref|YP_003826348.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201155|gb|ADL08725.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 463

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 127/281 (45%), Gaps = 11/281 (3%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           + L   ++ LS +V  +S          +T     +            E +RK++E++ +
Sbjct: 190 RRLTEPIKQLSAAVKRFSK---GERDVKITLETGDELSSLAEDFNAMAEKIRKSEELRRN 246

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
               +++ELR+P+  I G  + ++   L    +     +  +    + +  L+ D+ DL+
Sbjct: 247 LTADIAHELRTPIAIIQGTLESIQEGVLEPTPA----LMLSLQEEVSRMTRLIKDLSDLS 302

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            V+AG ++LN   I   +L  +       +     IR  +     L +  AD  RL+QI 
Sbjct: 303 LVEAGKLELNRIKIFPAELAGKFIH-FKAEAEAKGIRFDINFPRNLPAVYADPTRLVQII 361

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRG 749
           + +LSNA+  +S G  + L A +  G  +F V++ GS I ++    +F RF     +   
Sbjct: 362 TNLLSNALKHTSSG-RIELSAEKAEGGVVFKVQDTGSGIKKEDLPYIFERFYRAEKSRSR 420

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  G GLGL+I +  +  HGG + + S +   +  +  IPS
Sbjct: 421 KTGGTGLGLAITKGLVEAHGGRIWVESREGEGSVFSFFIPS 461


>gi|302785295|ref|XP_002974419.1| sensory histidine protein kinase [Selaginella moellendorffii]
 gi|300158017|gb|EFJ24641.1| sensory histidine protein kinase [Selaginella moellendorffii]
          Length = 1024

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 18/294 (6%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN-----VTDSVRAERALTEKNEA 561
           F DE   LQ     ++D +  +    L   + +    +     + +  R E  L    +A
Sbjct: 385 FRDEIHELQVIFNSMADQISNHHAT-LEQKRALARANDELASEIDERKRIEVELQMAKDA 443

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              AD+ K+ F+ ++S+E+R+PL  II  T+L   ++      +Q +Y++ +  S+  LL
Sbjct: 444 AVAADKAKSEFLANMSHEIRTPLNGIINCTELCLDTRTSL---EQQEYLDLVRFSAKHLL 500

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            ++ DILD + ++AG +++      L D L      +A + H+  + I   +   +    
Sbjct: 501 RIITDILDFSKIEAGKLEMEEIQFSLYDQLEHAVSVLAARAHKKGLEIAWRAGLDVPDQL 560

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIFSVKNNGSSIPEDMCK 736
           + D  RL QIF  ++ N++ F+ KG  V+        RD  + IF+VK+ G  IP+    
Sbjct: 561 IGDPGRLFQIFVNLIGNSIKFTEKGEVVVSAQVHNIYRDRVELIFAVKDTGVGIPKAKQS 620

Query: 737 SVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +F  F        R    G GLGL I         G + + S     +     
Sbjct: 621 LLFQAFSQVDSSTTRWLYGGTGLGLVISSKLAAAMAGKMWVESE-GKGSIFYFT 673


>gi|254282460|ref|ZP_04957428.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium
           NOR51-B]
 gi|219678663|gb|EED35012.1| multi-sensor Hybrid Histidine Kinase [gamma proteobacterium
           NOR51-B]
          Length = 1316

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 119/241 (49%), Gaps = 9/241 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L        +A+  K+ F+  +S+E+R+PL  +IG  +LL  +    +  +Q ++ +   
Sbjct: 682 LELATREAEEANRAKSEFLAVMSHEIRTPLHGMIGMNELLIKT---DITPQQRRFTKAAL 738

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+L+N+ILDLA ++A  M++  +   L +L++EV         +  + I  + +
Sbjct: 739 NSGKTLLHLINEILDLAKIEADRMEVEETDFDLIELIDEVCYLQGEPAQKKGLAIYHLPE 798

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPE 732
             +   +  D Q++ QI + +L NA+ F+ +G  + ++  R  +     +V++ G  I E
Sbjct: 799 AGIANRYRGDSQKIRQIVTNLLGNAIKFTDRGH-ITVRVQRTIDDTISIAVQDTGIGIHE 857

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTINCRIP 789
           ++   +F +F        R   G GLGL+I  +F  L GG + I  S D   T +   +P
Sbjct: 858 EVRDRIFEKFTQADASTTRKYGGTGLGLTICRNFATLLGGKLDILESGDGTGTLVEVELP 917

Query: 790 S 790
            
Sbjct: 918 L 918


>gi|146341588|ref|YP_001206636.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194394|emb|CAL78419.1| putative sensor histidine kinase with a response regulator receiver
           domain [Bradyrhizobium sp. ORS278]
          Length = 731

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  L    +A       ++ F+  +S+E+R+P+  +IG            L  +Q + 
Sbjct: 323 RYQAGLAASRDAAEAGTRARSEFLAMMSHEIRTPMNGVIGLA---DLLLSADLAPEQRKI 379

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              +  S+  LL L+ND+LD + +DA  +++ +    L+  +    + + ++  E  +++
Sbjct: 380 ATTLRESADYLLQLLNDVLDFSKLDADRLEIEHIEFDLHRSVTATAELLVSRAKEKGLQL 439

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVK 724
                  + +  V D  RL Q+   ++ NA+ F+  GS  V ++A    G     +FSV 
Sbjct: 440 TTSIAPDVPTYVVGDPARLRQVLFNLVGNALKFTEAGSVHVDVRAEDLAGPNLTLVFSVA 499

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +    +F +F    +   RR  G GLGL+I +  +   GG + + S     +
Sbjct: 500 DTGVGIPAEAVGRLFKQFSQVDNSISRRFGGTGLGLAICKRLVTCMGGDIKVQSKVGEGS 559

Query: 783 TINCRI 788
           T    I
Sbjct: 560 TFTFSI 565


>gi|329928581|ref|ZP_08282448.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937697|gb|EGG34106.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 1219

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/380 (23%), Positives = 171/380 (45%), Gaps = 22/380 (5%)

Query: 427 TKYNTLVKVQGETIDHLSE--GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
             +     +Q + +  LS+  G+ +    GR+++     + L +++            + 
Sbjct: 404 ASFEETTTLQEQLMSQLSQSLGIILNNITGRLRVE----QLLRESQAMTEELQVQSEELQ 459

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                    ++  +     +   +D  +  Q  LE  +  ++  +       Q +    +
Sbjct: 460 TQQEELRRTNENLEEQTNALKRSEDLLQRQQEELEHYNTELVAKTRALEEQVQEVEEKND 519

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R +  L ++ + L    + K+ F+ ++S+ELR+PL +++  + LL  +K G+L+S
Sbjct: 520 EIEKARMQ--LEQQAKQLSITTKYKSEFMANMSHELRTPLNSLLILSQLLSENKDGNLSS 577

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ +Y + I  S + LL ++++ILDL+ VDAG M++NY  + L D+   V+Q+ A     
Sbjct: 578 KQIEYAQTIYMSGSDLLKMIDEILDLSKVDAGKMEINYEDVQLPDIEAFVEQNFAAVASR 637

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
            +I + V  + +L  S V D  R+ QI   +LSNA  F++ GS  +L    D        
Sbjct: 638 KHINLGVRIEEELPQSIVTDSHRVKQILRNLLSNAFKFTNSGSVELLVEKADKDKLPVYL 697

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGG 770
                   F+VK+ G  IP D    +F  F         +  G GLGLSI      L GG
Sbjct: 698 NAESDYVSFAVKDTGIGIPADKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGG 757

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +++ S +   +     +P+
Sbjct: 758 GITVESEEGKGSCFTLFLPA 777


>gi|300857303|ref|YP_003782287.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300437418|gb|ADK17185.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 471

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 117/243 (48%), Gaps = 3/243 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     ++     ++L K ++ +  F+ +VS+E+RSP+T+I GF   +    + +   KQ
Sbjct: 228 EIGELAKSFNIMADSLEKVEKHRREFISNVSHEIRSPITSIKGFIGGMIDGVIPA--EKQ 285

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y+    +    L  LVND+LDL+ ++AG  KL    + +N+++        TK++   
Sbjct: 286 NYYLSVTYSEIQRLTRLVNDLLDLSAIEAGEFKLRIEEVDINEIIRLCVIKFETKINNKK 345

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +++ V+ +       AD+ R+ Q+ + ++ NA+ +S  G  + +         + SV N+
Sbjct: 346 LKVDVLLEDNKLYVAADKDRITQVVTNLVDNAIKYSDIGGNIKVSTKVKGEKAVVSVYND 405

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           GS IPE   K +++RF         +   GLGLSIV S +   G  +   + +       
Sbjct: 406 GSGIPESDLKHIWDRFYKVDKSRTSKVSTGLGLSIVRSILTQLGEDIWAENKEPKGIMFT 465

Query: 786 CRI 788
             +
Sbjct: 466 FTL 468


>gi|146277187|ref|YP_001167346.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555428|gb|ABP70041.1| signal transduction histidine kinase [Rhodobacter sphaeroides ATCC
           17025]
          Length = 733

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/512 (18%), Positives = 199/512 (38%), Gaps = 36/512 (7%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSF-VELWEIDLAFLATNPSNDELLEFLRSAN- 363
            +    +  +    A+FD +  L   N  F + + ++    L    +    ++ +  +  
Sbjct: 87  QNLASAIETVQEGFALFDADDVLVLCNSRFGMHMLDV-QEHLKPGLTFGSYIDRVSRSRY 145

Query: 364 -KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             LPE    + W       +    +  +   + + + L V       GGT+ +  ++T  
Sbjct: 146 LALPEAETPEDWAIRRKRRHYDRHSIFNVRLIWD-RWLQVSEHRTADGGTVILQTDVTDL 204

Query: 423 VDLET-----KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + +E        +   +V   T+DH+++GV +F  +GR+   N    SL     NR   G
Sbjct: 205 IRIERLERGKMLDDQARVIRATLDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRLG 264

Query: 478 THIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                +    +   +  DG D            ER  L   L    + +L+     +P+ 
Sbjct: 265 VSFGYLLERFAHEISFGDGMDAGQLEAWVQARHERPPLSFELRRHDELILDVFAQEMPDR 324

Query: 537 QTMLTFVNVTDSVRAERALTEKNE------------------ALRKADEIKNSFVQHVSY 578
             +++F +VT    A  AL+  NE                     +A+  ++ FV   S+
Sbjct: 325 GFVMSFTDVTAERAAIEALSRANETLEARVMERTLELEDALAHAERANASRSRFVAAASH 384

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L  PL+    F   +    +     +  + +     +   +  ++  +LD++ +++G  
Sbjct: 385 DLLQPLSAAKLFIASIGDEAVA---PESREALAKAQKALDSVEGILGALLDISKLESGRA 441

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            ++   + L+ L+ ++    A       +R+ V+  G L    +D   L +I   ++ NA
Sbjct: 442 AVSVQPVRLDRLMAQLSDEFAPIAAARGLRLTVLPSGAL--VASDPTYLRRILQNLIGNA 499

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLG 757
           + ++++G  V++ A R  G     V + G  I E   +++F  F           G+GLG
Sbjct: 500 IRYTARG-RVLVGARRRRGMVRLEVWDTGPGIAEADQEAIFKEFHRLDAPASPSEGMGLG 558

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L+IVE    L G  + + S     T    ++P
Sbjct: 559 LAIVERACGLLGHPLGLRSEIGRGTCFMLQVP 590



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 79/307 (25%), Gaps = 29/307 (9%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           ++  R +     L +L+L              +             +++       D   
Sbjct: 53  QVRERTADLQRTLELLNLSNER-----LAEATRAAEEARQNLASAIETVQEGFALFDADD 107

Query: 214 DILWANISY------KKNTETEGIVFQKAIGESRK------LFKEEIKKRMISSSALEKN 261
            ++  N  +       +     G+ F   I    +         E  +   I       +
Sbjct: 108 VLVLCNSRFGMHMLDVQEHLKPGLTFGSYIDRVSRSRYLALPEAETPEDWAIRRKRRHYD 167

Query: 262 FCETVSTLEHGNNKSYKIVR-VLNSFGEAGIAIDVSKEITVND---------QLTHTYEI 311
                +     + +  ++        G   +  DV+  I +           Q       
Sbjct: 168 RHSIFNVRLIWD-RWLQVSEHRTADGGTVILQTDVTDLIRIERLERGKMLDDQARVIRAT 226

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           L ++   + IFD    L   N+    L  I +       S   LLE         + ++ 
Sbjct: 227 LDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRLGVSFGYLLERFAHEISFGDGMDA 286

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
              +  + + ++            +   L V     P  G +  F ++T +       + 
Sbjct: 287 GQLEAWVQARHERP-PLSFELRRHDELILDVFAQEMPDRGFVMSFTDVTAERAAIEALSR 345

Query: 432 LVKVQGE 438
             +    
Sbjct: 346 ANETLEA 352


>gi|209548487|ref|YP_002280404.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534243|gb|ACI54178.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 513

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/366 (23%), Positives = 148/366 (40%), Gaps = 26/366 (7%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS----------R 489
           +D     V    P G +       R  +            +  +  +            R
Sbjct: 108 LDATPGLVFFLDPHGSVATIGGRDRRDFLAWMRDPKGRGFLEQVHVSDRILFLQALDSLR 167

Query: 490 YYNESDGWDLFAAIITSFDDERK----SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              +++  DL     +   D+R+     +  T    +D  L   I  L +          
Sbjct: 168 RGEDAECVDLRIDRPSVARDQRQFAYLRMDMTARRDADGELAAVIAQLRDVSV------- 220

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNS 604
               +       +      A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N 
Sbjct: 221 --EQQLRAEAQNRVADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFEND 278

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +YV  +  S   LL++VN +LD++ ++AG  +L      +   +   +  +A +   
Sbjct: 279 RQREYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILEPFDIASSVKSCESMLALQAKT 338

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    +V 
Sbjct: 339 KGLTLTSRIQRGLGEIVADQRAIQQILINLVGNAIKFTEAGGVVSVDAAARDGILKLTVS 398

Query: 725 NNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  D    +   FV   N +  +  G GLGLS+V+  + LHGGH +I+S     T
Sbjct: 399 DTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGHFAIASQPGEGT 458

Query: 783 TINCRI 788
            I   I
Sbjct: 459 IITIEI 464


>gi|32400396|dbj|BAC78687.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1145

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 156/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 390 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 449

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 450 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 505

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 506 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 565

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 566 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 622

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 623 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 682

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 683 LVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 742

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 743 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 785


>gi|330448474|ref|ZP_08312122.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492665|dbj|GAA06619.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 576

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 151/376 (40%), Gaps = 34/376 (9%)

Query: 428 KYNTLVKVQGETIDHLSEG------VAVFGPDGRIKLSNPAFRSLWKTEENRLS---PGT 478
           K +   +   + +D L +G           P  +I +S        +      +      
Sbjct: 80  KESATHENIQQLLDSLIDGNYVTGCYLAVDPTDKINISGKYSSGRMQEWSPPATLNTTDI 139

Query: 479 HIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           +  +         N   G   +FA  I   +D   ++Q  + L  +      ++     +
Sbjct: 140 YWESDKHVLWHNINTHSGCVGIFAVRIVCSEDRLNAIQKQMALFCE------LLRSAIGR 193

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +     +    RAE           ++++    F+  +++ELR+PL  ++G  +LL  +
Sbjct: 194 LITFHQAINAKKRAE-----------ESEQSTRDFLAMINHELRTPLNGLLGSAELLHDT 242

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              SL++ Q + +  ++ S  +L  ++ND+LD + ++AG+++L       + L  +++  
Sbjct: 243 ---SLDTHQLKLLTTLNHSGELLRAIINDLLDYSKINAGMLELIEKPFDSHLLATKLEDI 299

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
              K +E  +   +     L +  + D  R+ QIF  ++SNA+ F+S G  V  K   ++
Sbjct: 300 FTHKANEKRLDFNIYYAPDLPAALIGDEDRIKQIFVNLISNAIKFTSDG-FVHAKLWWED 358

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSI 774
               FSV+++G  I +     +F  F       +    G GLGL I +      GG + +
Sbjct: 359 QKLQFSVRDSGCGIDQADQHKLFKPFSQVDITSKRSHEGTGLGLVICKQLCEQMGGSIRV 418

Query: 775 SSSDEGVTTINCRIPS 790
            SS          +P 
Sbjct: 419 ESSLGRGACFQISLPL 434


>gi|225568541|ref|ZP_03777566.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM
           15053]
 gi|225162769|gb|EEG75388.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM
           15053]
          Length = 885

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 149/364 (40%), Gaps = 23/364 (6%)

Query: 442 HLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
            + +   +   D G I         +       +   +  + +    +R + E       
Sbjct: 246 SIDDAFIIRDADTGAIIYRGLNLERILGIP--MVDMESLYQGLKEEDARIFKEDYN---- 299

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN---AQTMLTFVNVTDSVRAERALTE 557
              + S     K ++ T        +   I  + +    Q +  F + T+ V + +AL E
Sbjct: 300 --AVQSASPYEKLVEYTRPDKEKRWMLVRIYRVEDMNAPQLITVFSDRTEEVCSRQALQE 357

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              A   A+  K+ F+  +S+E+R+PL  +IG T +   S   S  ++    +  I+ SS
Sbjct: 358 AMLAAENANAAKSEFLSRMSHEIRTPLNAVIGMTTIAAASV--SDPARVEDCLTKITFSS 415

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-- 675
             LL L+ND+LD++ +++  M L      + +++N    ++  +    +I  +   +G  
Sbjct: 416 RHLLMLINDVLDMSKIESSKMALQNEPFDIFEIVNGFVSTVYAQAKSKDIVFEETMEGFG 475

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSI 730
           K   F+ D  RL QI   + SNA+ F+  G ++ L  +R           F +K+ G  +
Sbjct: 476 KDTVFIGDSLRLNQILMNLSSNAVKFTPPGGSIHLDVSRYKKGNQADVIRFVLKDTGIGM 535

Query: 731 PEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++    +F  F         +  G GLG+SI  + I L GG + + S     T     +
Sbjct: 536 TKEAVGRIFQPFEQADASIAKRYGGTGLGMSITRNLITLMGGQIQVESEPGLGTAFIVDL 595

Query: 789 PSKE 792
           P ++
Sbjct: 596 PFEK 599


>gi|260946877|ref|XP_002617736.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720]
 gi|140083809|gb|ABO84860.1| histidine kinase receptor NIK1 [Clavispora lusitaniae]
 gi|238849590|gb|EEQ39054.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720]
          Length = 1082

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 15/240 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+PL  IIG T L   ++   L   Q + +  ++  + 
Sbjct: 481 REAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLSLDTE---LTQYQREMLSIVNNLAN 537

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      L   +    +++A K  E N+ +    D    
Sbjct: 538 SLLTIIDDILDISKIEANRMTVEQIDFSLRGNVFGALKTLAVKAIEKNLDLTYQCDSSFP 597

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
            + + D  RL Q+   +  NA+ F+ KG  V +   + +            F+V + G  
Sbjct: 598 DNLIGDSFRLRQVILNLAGNAIKFTKKG-KVSVSVKKSDVTPADSDKLLLEFNVSDTGIG 656

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F+ F        R   G GLGLSI +  I L GG + ++S     +  +  
Sbjct: 657 IERDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIQLMGGEIWVTSDYGHGSCFSFT 716


>gi|330505538|ref|YP_004382407.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919824|gb|AEB60655.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 962

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 3/230 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++ + +K+ FV  VS+ELR+PLT I G   L+    LG +       +    A+S  L 
Sbjct: 477 AKRIERLKSEFVSTVSHELRTPLTAIAGSLGLINGGALGPVPEGMRTMLSIAQANSQRLS 536

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           +L+ND+LD+  ++AG M+ +     L   L +   S         I+++++ D       
Sbjct: 537 HLINDLLDMDKLEAGKMQFDLQPCPLVAQLQDALDSNQAYADRQQIQLRLL-DCPPARVR 595

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+ +  +SNA+ +S  G+ V L+A R +      V + G  I  +  + +F++
Sbjct: 596 IDAIRLQQVLANFISNAVKYSPPGAEVHLRAERRDTRVRVEVIDQGPGIAGEFRQRIFSK 655

Query: 742 FVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F          + G GLGL+I +  I   GG +   S +         +P
Sbjct: 656 FSQADASDSRSKGGTGLGLAISKELIERMGGQIGFDSVEGQGACFWFELP 705


>gi|325105302|ref|YP_004274956.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324974150|gb|ADY53134.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 491

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 156/380 (41%), Gaps = 29/380 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +   + ++  ++ +    V+    T++ L +       +G I   N  +     T++N  
Sbjct: 134 LQSEIEIRKKVQEELRKKVEHLHFTLESLPQIAFTATEEGDIDFVNKKWFGYSVTDKNFP 193

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY---SII 531
                 ++I    S               I    D    ++  ++ ++     +    I+
Sbjct: 194 PVHPEDKDIFQEWS---------------IAMLTDSLLEMEVRIKKINGEAYRFHLLRIV 238

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+     ++ +V                E  ++ ++ K+ F+   S+EL++PLT+I  + 
Sbjct: 239 PIKEDGRVVKWVGTF----------TDIEDQKQIEKKKDEFLSIASHELKTPLTSIKAYV 288

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            LL+ S     NS    Y+  + +    L NL+ D+LD++ ++ G +KLN     L+ L+
Sbjct: 289 QLLERSLKAEDNSPVGTYIHRVQSQLDKLQNLITDLLDISKIENGKLKLNKRPFCLSSLI 348

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           + V  +I        + I    +      +AD  R+ Q+    L+NA+ ++     +I+K
Sbjct: 349 DNVVNTIKHTYGNVQLEILQEGERLDREIIADENRVEQVLINYLTNALKYAPDSDKIIIK 408

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGG 770
             +       SV + G+ I E+  KS+F++F        + +G+G+GL I    I  H G
Sbjct: 409 TEKMREFVKVSVTDFGTGISENNQKSIFDKFYRVEETSVKFQGLGIGLYICSEIIRQHNG 468

Query: 771 HVSISSSDEGVTTINCRIPS 790
            V I+S      T    +P 
Sbjct: 469 DVGINSKLGNGATFYFTLPL 488


>gi|253578619|ref|ZP_04855891.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850937|gb|EES78895.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 686

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 120/251 (47%), Gaps = 10/251 (3%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
               +    L +  E  + A+E K  F+ ++S+++R+P+  IIGF+ LL+ +       K
Sbjct: 287 HREKQYAAELEKAAELAKSANEAKTRFLFNMSHDIRTPMNAIIGFSGLLEKNLQN--EEK 344

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y+  I +S  +L+ ++N IL++A +++G   L      +N L + V       + + 
Sbjct: 345 AKEYLGKICSSGNLLMTIINQILEIARIESGTTALQLKAEDINTLFHTVNTVFEEDVRKK 404

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------F 719
           N++  V  D      + DR +L +I   I+SNA+ ++S G  V +K    + +       
Sbjct: 405 NLQYSVDLDVYHTFILCDRVKLQEIMLNIISNAIKYTSDGHGVHVKIYEKDSEDPRKARL 464

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           IF+ ++ G  + E+    +F  F       + +  G GLGL IV+S I L GG + + S+
Sbjct: 465 IFTCEDTGIGMSEEYLPHIFEEFSREHTTTENKVAGTGLGLPIVKSMIELMGGSIRVEST 524

Query: 778 DEGVTTINCRI 788
               T     I
Sbjct: 525 QGAGTKFTVDI 535


>gi|167957382|ref|ZP_02544456.1| two-component sensor kinase, probably involved in phosphate sensing
           [candidate division TM7 single-cell isolate TM7c]
          Length = 619

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 147/367 (40%), Gaps = 34/367 (9%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I  +S+GV +    G+I L NPA + +        + G HI ++        N     D
Sbjct: 49  IIRSISDGVIMTKDSGQIILINPAAQRMIGWSAAD-ALGLHINSVLKFEDEKGNP--ISD 105

Query: 499 LFAAIITSFDDER-KSLQGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERAL 555
               ++ S  +++ + +   +   S+  L  S  I PL     ++ F + T         
Sbjct: 106 TAHPVVVSLANKKVQRINLVVVTKSNKKLNISLMITPLDEGGVIVVFRDTTKER------ 159

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                     +  +  F+   S+E+R+P+ +I G+  L    K+  +++K  +Y+     
Sbjct: 160 --------AEEREQAEFISTASHEMRTPVASIEGYLGLALNPKVSKIDAKAYEYISKAHE 211

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  L  L+ D+L+++  + G +K   + +   D+  +  + +  +  E  + +     G
Sbjct: 212 SAQYLGRLLRDLLEISRAEDGRLKNRITAVNAIDISRKATEDLIKEAREKGLNLLYKPTG 271

Query: 676 -----------KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
                       +    AD+ RL +  S ++ NA+ ++  G  + +     N    FSV 
Sbjct: 272 GRSKSGDVTISPVLYVRADKDRLQECLSNLIENAIKYTPSG-QIAVDVNASNEYIRFSVS 330

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +    +F +F    +   R   G GLGL +    +    G +  +S+    +
Sbjct: 331 DTGIGIPPEDIPHLFQKFYRVDNSDTREINGSGLGLYLTRRMVESMNGRIGATSTRNKGS 390

Query: 783 TINCRIP 789
           T    +P
Sbjct: 391 TFYIDLP 397


>gi|320158468|ref|YP_004190846.1| sensor protein torS [Vibrio vulnificus MO6-24/O]
 gi|319933780|gb|ADV88643.1| sensor protein torS [Vibrio vulnificus MO6-24/O]
          Length = 970

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 117/233 (50%), Gaps = 7/233 (3%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A+  K++F+  +S+E+R+P+  ++G   LL  S L  L   Q +Y + I+ S   LL
Sbjct: 464 AEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL---QKRYADIINRSGKNLL 520

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ND+LD + ++AG +++  S   L+ ++ +  Q + ++  E ++      +  +  + 
Sbjct: 521 AILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSYHIESDVNHYW 580

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-FSVKNNGSSIPEDMCKSV 738
             D  R+ Q+ + ++ NA+ F+ +G+  + +    +  + + F V + G  I +    ++
Sbjct: 581 RGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGIGIAQQEQATL 640

Query: 739 FNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+ F   +  +    G GLGL+I    I   GG + ++S +   +     +P 
Sbjct: 641 FDAFTQASGGQKAAGGTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWFTVPL 693


>gi|254445929|ref|ZP_05059405.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198260237|gb|EDY84545.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1263

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 9/334 (2%)

Query: 465  SLWKTEENRLSPGTHIRNIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             +  T     S G  +  I A  S         + +      + +         LE  + 
Sbjct: 790  RISVTPPWWASIGFRVIFILAVVSALVLLYRIRFKILRRQREALERRVAERTSELEAANL 849

Query: 524  SVLEYSI-IPLPNAQTMLTFVNVTDS-VRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            S+ E    I L N +     V + D      + L        ++D++K+SF+ ++S+E+R
Sbjct: 850  SLAEKQEEIALQNKELQRGRVELEDRVHERTKELEHAKLRAEESDQLKSSFLMNMSHEIR 909

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +P+  I+GF++LLK   +   +  +++++E I ++   LL L++DILD++ + +G +KL 
Sbjct: 910  TPMNAILGFSELLKDKDIDEKD--RNEFIEIIGSNGRSLLVLIDDILDISLIQSGRVKLR 967

Query: 642  YSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 ++++LNE+K     K     ++ ++ +   K     AD  R  Q+ + +L NA+ 
Sbjct: 968  NEVFYIDEVLNELKDFYRLKTTSLVSVELEDVELFKGLKLNADSVRFRQVLNNLLGNALK 1027

Query: 701  FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
            F+ KGS +       NG+ +F V + G  I +   K VF+ F    N       G G+GL
Sbjct: 1028 FTEKGS-IRFGCKPRNGEALFHVVDTGLGIDKIEQKRVFDAFYKIENDSSKLFPGTGIGL 1086

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            SI    I+  GG + + S     +     +P  +
Sbjct: 1087 SICRKLISGMGGDIWVESQPGEGSVFYFTLPLSQ 1120


>gi|138893858|ref|YP_001124311.1| sensory transduction histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250568|ref|ZP_03149258.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134265371|gb|ABO65566.1| Sensory transduction histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209917|gb|EDY04686.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 443

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 6/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +  +   E ++ L++A+E++   +  V++ELR+PLT + G  D  +  +      K 
Sbjct: 202 EYGKVAQTFNEMSKQLQQAEEVRRRLMADVAHELRTPLTILRGKLDWFQQQRRPIEPEK- 260

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  +      L  LV D+  L+  +AG + L      +  LL ++ + +A    E N
Sbjct: 261 ---LLPLQDELIRLTRLVEDLHQLSLAEAGKLPLERKPTDMESLLQQLIERVAPSAEEKN 317

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           IRI +       +   D  R+ Q+F  +L NA+ ++ +G TV +    +      +V + 
Sbjct: 318 IRIHLTCSTNYTTISVDPHRITQVFLNLLVNAIRYTPEGGTVNVVIDEEPSMLQIAVTDT 377

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    +F+RF          R G GLGL+I   F++ HGG + + S+    TT 
Sbjct: 378 GIGIAPEHLPFLFHRFYRTDEARTRNRGGTGLGLAIANEFVSAHGGTIDVHSTPGQGTTF 437

Query: 785 NCRIP 789
             ++P
Sbjct: 438 LVKLP 442


>gi|39726367|gb|AAR30126.1| putative histidine kinase NIK1p [Gibberella moniliformis]
          Length = 1282

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  
Sbjct: 687 QRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNI 743

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +   
Sbjct: 744 VNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKTLAVKANEKFLDLTYK 803

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-------FSV 723
            D  +    + D  RL QI   ++ NA+ F+  G   + +K +    +         F V
Sbjct: 804 VDSSVPDYVIGDSFRLRQIILNLVGNAIKFTEHGEVSLTIKESMGQNNVRPGEYAVEFVV 863

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG + ++S     
Sbjct: 864 EDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGDLWVNSEHGKG 923

Query: 782 TTINCR 787
           +  +  
Sbjct: 924 SEFHFT 929


>gi|260770662|ref|ZP_05879593.1| sensor histidine kinase [Vibrio furnissii CIP 102972]
 gi|260614388|gb|EEX39576.1| sensor histidine kinase [Vibrio furnissii CIP 102972]
          Length = 1143

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 166/413 (40%), Gaps = 32/413 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +  L+      +  G  I ++    +       G          +  E+ +   +  + 
Sbjct: 656  RYLELFDFPPGLIQVGRPIADVIRHNAEQGLCGPGEPEDHVRRRVYHLEQGTRHTSSRVR 715

Query: 522  SD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
             D  V+E    P+P    +++F ++T    AE+ L E NE L +                
Sbjct: 716  PDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQTLKEANENLEERVLERTRELEKLNKQL 775

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                       + K+ F+  VS++L  PL     F   L          + S ++E   +
Sbjct: 776  VAATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLAEVAQEDEVKRLSHHIESALS 835

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L+ D+LD++ +++G ++++  +  + D+L  +    +    +  +   ++   
Sbjct: 836  AAE---DLIGDLLDISRLESGKLEIHPQSFAIKDVLTNLNAEFSALARQQGVDFSMV--P 890

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  +D + L ++    L+NA  ++ KG  V+L      G     V +NG  I ED  
Sbjct: 891  SSLFVRSDPKLLRRVVQNFLTNAFRYNPKG-KVLLGVRHLQGKVRIDVWDNGIGIEEDKQ 949

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F         +G+GLGL+I +   ++ G  +++ S     +  +  +
Sbjct: 950  QEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHEIAMRSWPGRGSVFSLTL 1002



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 75/228 (32%), Gaps = 15/228 (6%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL++     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFDFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++                  +  ++   +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCGPGEPEDHVRRRVY-HLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             F ++TV  D E       +   E          V      ++  N    +  +  E  
Sbjct: 735 MSFTDITVFRDAEQTLKEANENLEER---------VLERTRELEKLNKQLVAATQRSERE 785

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLE 519
               +    +AA         +   LFA+ +     +DE K L   +E
Sbjct: 786 SQSKSRF--LAAVSHDLMQPLNAARLFASSLAEVAQEDEVKRLSHHIE 831


>gi|153834916|ref|ZP_01987583.1| sensor histidine kinase [Vibrio harveyi HY01]
 gi|148868642|gb|EDL67726.1| sensor histidine kinase [Vibrio harveyi HY01]
          Length = 1143

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 162/414 (39%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L+      +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 656  RYLELFVFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGTRHTSSRV- 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                 V+E    P+P    +++F ++T    AE+AL + NE L +               
Sbjct: 715  RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANETLEERVRARTRELEQLNKQ 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K+ F+  VS++L  PL     F   L      S   K S ++E   
Sbjct: 775  LVAATQRSEHESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDSETQKLSTHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G + +N     +ND+L  +    +    +  I   +I  
Sbjct: 835  GAAE---DLIGDLLDISRLESGKLDVNVHGFAVNDVLANLNAEFSALAKQQGIEFTMI-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  +S  G  V L   R  G     V +NG  I E+ 
Sbjct: 890  PSSLMVKSDPKLLRRVVQNFLTNAFRYSPNG-KVALGVRRVQGRVRIDVWDNGMGIEEEK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 949  QQEIFEEFNRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWFGKGSVFSITL 1002



 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFVFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKDANETLEE 759


>gi|33865087|ref|NP_896646.1| two-component sensor histidine kinase [Synechococcus sp. WH 8102]
 gi|33638771|emb|CAE07066.1| two-component sensor histidine kinase [Synechococcus sp. WH 8102]
          Length = 680

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 155/393 (39%), Gaps = 46/393 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    GRI L+NP  R L++ E  +L     +  +   
Sbjct: 287 EELTAAQVKQQSLIATMADGAILLDEQGRIVLANPTARRLFRWEGRKLEGQELVAELPDL 346

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            +         DL        +D R S+     TL ++  +V + S       +++    
Sbjct: 347 LAIELQAP--LDLLLISGADSEDLRCSVGEPSRTLRIVMQAVRDAS------GESLKGIA 398

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L         
Sbjct: 399 VTVQDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDLGDQLSP 448

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  +++   +  +  L  LVND+LDL+ +++G   + +  + L   + +  ++      
Sbjct: 449 EEHKEFLGVANDETDRLTRLVNDVLDLSRLESGR-AVQFEAMNLLPAMEQTLRAYRLNAD 507

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------ 717
           + ++++++ +   L   + +   LLQ+   ++ NA+ FS  G T+ L+A           
Sbjct: 508 DKHVKLELDAPEDLPEVLGNWDLLLQVLDNLVGNALKFSRSGGTLALRAYPWPDTCPVGS 567

Query: 718 -----------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLS 759
                                 V + G  I     + +F+RF    +      G GLGLS
Sbjct: 568 PNDEQAGPSCALSSPLPRLRVEVADTGCGISAADQERIFDRFFRVENAVHTEVGTGLGLS 627

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           IV   +  HG  VS++S  E  TT    +P  +
Sbjct: 628 IVRGILEKHGTKVSMASEPEVGTTFWFDLPLGQ 660



 Score = 44.2 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 56/180 (31%), Gaps = 17/180 (9%)

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
            NF   +     G     +++   N+      A D +    +         ++  +    
Sbjct: 250 GNFQARIDLPVGGE--LGELLTGFNAMASQLEAYDEANIEELTAAQVKQQSLIATMADGA 307

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL------NWKT 373
            + D+   +   N +   L+  +   L       EL + L    + P  L      + + 
Sbjct: 308 ILLDEQGRIVLANPTARRLFRWEGRKLEGQELVAELPDLLAIELQAPLDLLLISGADSED 367

Query: 374 WKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            + ++    ++           +G++L          G     ++LT +V+L    +  +
Sbjct: 368 LRCSVGEPSRTLRIVMQAVRDASGESLK---------GIAVTVQDLTREVELNAAQSRFI 418


>gi|84393815|ref|ZP_00992561.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
 gi|84375555|gb|EAP92456.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
          Length = 1129

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 12/290 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ E         +  L      +     + + ++NE L
Sbjct: 403 INTERKDEIGRLAVSFERMQRSIRE---------KMQLIKSQNGELEDNLKTIQKQNEEL 453

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ I  S   L  
Sbjct: 454 QLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPIPANQKYQLDIIINSGQRLAT 513

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LD   +  G + +  S + L+   + V +     +    IRI       LG   +
Sbjct: 514 LVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRIINQVPSDLGLVSS 573

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+   ++ NA+ ++S+G  +++ A+  + +    V + G  IP +  + +F   
Sbjct: 574 DPQRLEQVMYNLVGNAIKYTSEG-KIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPL 632

Query: 743 VSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +         R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 633 IQAGQDASNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPL 682


>gi|332528410|ref|ZP_08404402.1| sensor histidine kinase/response regulator [Hylemonella gracilis
           ATCC 19624]
 gi|332042089|gb|EGI78423.1| sensor histidine kinase/response regulator [Hylemonella gracilis
           ATCC 19624]
          Length = 1127

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 127/261 (48%), Gaps = 6/261 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             QT L    +    R + AL    EA   A + K  +V  +++ELR+PL +I+G+  +L
Sbjct: 639 ERQTQLLQKEIDAHQRTDEALQSAKEAAESASQAKTRYVAGMTHELRTPLNSILGYAQIL 698

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 +L     + V  I  S   +  L++ +LDLA ++AG ++L+ + +   + L+E+
Sbjct: 699 LRG--NALKGGAREAVTTIQQSGQHMHALIDGLLDLARIEAGRLRLDPAPLPFQEFLSEL 756

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + +  +     +  ++ + G++ ++V AD +RL QI   +L+NA+ F+ +G  ++ +  
Sbjct: 757 ARMVQPQAEGKGLAFRLETLGRVPAWVRADAKRLRQILINLLANAVRFTDRG-RIVFRVD 815

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
             +    F +++ G  I     + +F  F   +   R    G GLGL+I      L GG 
Sbjct: 816 CRHEVLRFDIEDTGIGIAPQDQERIFMPFERGSAGRRSSEAGTGLGLAITHLLTELMGGE 875

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S     +T + R+  +E
Sbjct: 876 LILQSEVGHGSTFSVRLYLRE 896


>gi|153812069|ref|ZP_01964737.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174]
 gi|149831724|gb|EDM86810.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174]
          Length = 986

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 176/386 (45%), Gaps = 24/386 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTH 479
            + D E  Y   +  +     ++ +   +      +    +P    L      ++     
Sbjct: 327 RRKDTEILYRDELFQKLSM--NVDDVFLMLDAKTYQADYVSPNAEKLLGITAEQIRKDIR 384

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA--- 536
              +        +E    +    I     ++R+     + L +     +  I + +    
Sbjct: 385 ---VLGKLHPAEHEDLEKNYLEEI--QVHEQREGDFKYVHLKTGEKRWFHNIAMGSEVNG 439

Query: 537 --QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             + +L   + T   +  +AL+E   A   A++ K++F+ ++S+++R+P+  IIGFT L 
Sbjct: 440 KKKYILVMSDRTSDWKMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLA 499

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
            ++       +   Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+++L+++
Sbjct: 500 VSNIDDK--KRVQDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVLHDL 557

Query: 655 KQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           K  I+ ++H   + + +   D        D+ RL Q+   +LSNA+ F+  G TV ++  
Sbjct: 558 KTIISGQIHAKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIR 617

Query: 714 RDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFI 765
           + +G       +   VK+NG  + ++  + +F+ F         + +G GLG++I ++ +
Sbjct: 618 QCHGTQKGSELYEIRVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIV 677

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
           ++ GG + + +  +  T    R+P +
Sbjct: 678 DMMGGTIEVQTEQDKGTEFIVRLPFR 703


>gi|159901169|ref|YP_001547416.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894208|gb|ABX07288.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 893

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 155/370 (41%), Gaps = 30/370 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           T        +   +  +++GV V  PDG++ L N    ++    E  L   +        
Sbjct: 534 TTVQDEASRKQAILQSIADGVIVLDPDGKVILVNHTATAMLGASEADLLGKSFAEF---- 589

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +    S G +LFA    +            E  S  +L  +  P+         V V 
Sbjct: 590 --QLTPLSGGAELFATPTAT---------TFYETTSQRILTMNAAPVEREGLQSGEVLVL 638

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V  ERA+          D  K  F+  +S+ELR+PLT+I G+ DLL    +G L  +Q
Sbjct: 639 HDVTEERAM----------DRAKTDFIATISHELRTPLTSICGYADLLLRGFVGPLTDEQ 688

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +Q++  I      ++ ++ +++ +A+++AG M+       L++LL  + Q++     +  
Sbjct: 689 TQFMSTIRQQGQSMVEVLQNVIVIASIEAGNMEPQIEQHSLDELLPPIAQALQKGFDQKQ 748

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +++ +     +   V DR     + +++L NA  ++  G TV ++A         +V + 
Sbjct: 749 LKLIIDLPENMPYIVVDRDHFKIMLTQLLENARRYTQTG-TVTVQAKAVEQRIQIAVIDT 807

Query: 727 GSSIPEDMCKSVFNRFVSNAH----RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           G  I     + +F RF           + RG+GLGL+I +  +  + G + + S     +
Sbjct: 808 GPGIASQDFERLFERFQRGGEQSGLTSKERGIGLGLAITKQLVEQNNGKIWVESEQGVGS 867

Query: 783 TINCRIPSKE 792
           +   + P  +
Sbjct: 868 SFIMQFPLMQ 877



 Score = 38.8 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 13/130 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            TV D+ +    IL ++   + + D +  +   N +   +     A L      +  L  
Sbjct: 534 TTVQDEASRKQAILQSIADGVIVLDPDGKVILVNHTATAMLGASEADLLGKSFAEFQLTP 593

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
           L    +L       T+ E       +                  +     + G + +  +
Sbjct: 594 LSGGAELFATPTATTFYETTSQRILTMNAAP-------------VEREGLQSGEVLVLHD 640

Query: 419 LTVQVDLETK 428
           +T +  ++  
Sbjct: 641 VTEERAMDRA 650


>gi|87123661|ref|ZP_01079511.1| two-component sensor histidine kinase [Synechococcus sp. RS9917]
 gi|86168230|gb|EAQ69487.1| two-component sensor histidine kinase [Synechococcus sp. RS9917]
          Length = 685

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +   +GRI L+NP  R L++ E   L     +  +   
Sbjct: 285 EELTAAQVKQASLIATMADGAVLLDAEGRIVLANPTARRLFRWEGRNLESQELLDELPHL 344

Query: 487 CSRYYNES-----DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +   +       +G      +  S DD  ++L+  L+ + D+          + +++  
Sbjct: 345 LAIELHAPLDALLNGISDSEDLRCSIDDPSRTLRIVLQSVRDA----------SGESLKG 394

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L       
Sbjct: 395 IAVTIQDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDMGDQL 444

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +  +++   +A +  L  LVND+LDL+ +++    + +  + L   L +  ++    
Sbjct: 445 SEEETKEFLGVANAETDRLTRLVNDVLDLSRLESNR-PVQFEAMALTPALEQTLRNYKLN 503

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
             +  + +++    +L   + +   LLQ+   ++ NA+ FS +G  ++L+A         
Sbjct: 504 ADDKQVSLRLDVPIELPEILGNWDLLLQVLDNLVGNALKFSRQGGVLMLRAYTWPDSCWM 563

Query: 718 -------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLG 757
                                   V + G  I E   + +F+RF    +      G GLG
Sbjct: 564 PAARQEESAPHCDLISPLPRVRIEVADTGFGISEADQQRIFDRFYRVENAVHTEVGTGLG 623

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LSIV   +  HG  + ++S  E  TT    +
Sbjct: 624 LSIVRGIVEKHGSTIHMASEPEVGTTFWFDL 654



 Score = 44.9 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 55/185 (29%), Gaps = 17/185 (9%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            S    +F   ++    G     +++   N+      A D +    +         ++  
Sbjct: 243 RSIASGDFETRIALPVSGE--LGELLDGFNAMAAQLQAYDAANIEELTAAQVKQASLIAT 300

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +     + D    +   N +   L+  +   L +     ELL+ L     +         
Sbjct: 301 MADGAVLLDAEGRIVLANPTARRLFRWEGRNLESQ----ELLDELPHLLAIELHAPLDAL 356

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETK 428
              I        +  D       +TL +++ S          G     ++LT +V+L   
Sbjct: 357 LNGISDSEDLRCSIDDP-----SRTLRIVLQSVRDASGESLKGIAVTIQDLTREVELNAA 411

Query: 429 YNTLV 433
            +  +
Sbjct: 412 QSRFI 416


>gi|288942367|ref|YP_003444607.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897739|gb|ADC63575.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 721

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 112/568 (19%), Positives = 221/568 (38%), Gaps = 56/568 (9%)

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFGEAGIA----IDVSKEITVNDQL 305
                A  +   +T++  E G      +    +L   GE   A    +D+++ + V   L
Sbjct: 36  ARQVLASGQPVRQTLALDEAGCTHRLDLILTPMLGPQGETAGAFVGVLDLTETLRVEQAL 95

Query: 306 THTYE----ILHNLTVAIAIFDQN-RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
             +      +    TV +A+ + + R +   N+    +   +           ELL    
Sbjct: 96  RESETQFRLMFDLATVGMAVIEPSTRRVLRVNQRLCRILGYEA---------GELLGMSF 146

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSN--------PRG 410
                PE   W   +    +V +    +  +  +   +G  +  +V +         P  
Sbjct: 147 QDLTHPEDR-WHDRRRFRRAVLQLDTDYFTEKRYVRKDGTVVWALVNATFIRDANGDPVR 205

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
               +F ++T + + ET+   L       ++  S+ + + G D R    NPA RSL   +
Sbjct: 206 AVAAIF-DITDRREAETRARDL----AAVVESSSDFIGIAGLDRRGLYINPAGRSLVGLD 260

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD------DERKSLQGTLELLSDS 524
             +      I +       ++   D   L  +I+ + +       E +          D 
Sbjct: 261 AEQDITEIRIED-------FFMPEDLEQLRQSILPAMETAGRWAGEFRFRHFVTGEPIDV 313

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             +   I  PN    L +  VT  +R E+A     +ALR+AD  K+ F+  + +ELR+P+
Sbjct: 314 FYDALRIDDPNTGRPLHYATVTRDIRTEKA---AEQALREADRRKDEFLAVLGHELRNPM 370

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I    ++L+   +   + +    +E +   +  +  L++D+LD++ +  G ++L    
Sbjct: 371 APIRHAVEILRALGVDG-DPRIRWAIEVLDRQTAHMGRLLDDLLDVSRIVQGRIELEPVE 429

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + + +L+ +    +   M E+  R            + D  RL QI   IL NA +++  
Sbjct: 430 LRVRELVQQAADGVRALMEEHRHRFVCRLPAPGWRVLGDPVRLSQILLNILVNAANYTPP 489

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVE 762
           G  + + +  +    +  V++NG  +  +   S+F  F    H G     G+GLGL+I  
Sbjct: 490 GGEIRIDSRIEGDSVLIQVRDNGQGMTAEQLDSLFGLFTRGPHAGDADSGGLGLGLAIAR 549

Query: 763 SFINLHGGHVSISSSD-EGVTTINCRIP 789
              +LHGG +   S      T +  R+P
Sbjct: 550 RLADLHGGCLEARSEGLGRGTELCLRLP 577


>gi|162452466|ref|YP_001614833.1| hypothetical protein sce4190 [Sorangium cellulosum 'So ce 56']
 gi|161163048|emb|CAN94353.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1360

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/498 (18%), Positives = 189/498 (37%), Gaps = 30/498 (6%)

Query: 306  THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                 +L +  +     D+   ++       E + +             L +  R     
Sbjct: 728  NDMENLLSSTDIGTIFLDRELKIRKFTPQIAESFNL------------LLQDVGRPIETF 775

Query: 366  PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----RGGTIWMFENLTV 421
               ++      ++  V  + E  +      +G++  + +          G +    +++ 
Sbjct: 776  TYAVDHPELTADLKRVLATGERVERELRDRHGRSFFLRILPYRAKGTIAGVVLTLIDVSG 835

Query: 422  QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
                E        +    +  + + +      GR   +N A        +   + G    
Sbjct: 836  LKAAEDALFHERYLLNSLLRSVPDAIYFKDARGRFIRTNNAMAERLGLSDPGEAAGKTGF 895

Query: 482  NIAATCSRY-YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII-PLPNAQTM 539
             +    +    ++ D   L       +  ER+       +  D V+E+ ++  LP     
Sbjct: 896  ELPGYEAALAVHQEDEVVLRTGEAQHYKLERR-------VRHDGVVEWDLVTRLPLIDAA 948

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               V +    R+  A     E ++ A   ++ F+  +S+ELR+PL  I+  T LLK    
Sbjct: 949  RHIVGIIGIFRSVTAQKRSEEQIKDAVRRRDEFLAMLSHELRNPLGAIVHATALLKEDCS 1008

Query: 600  GSLNSK--QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             S  +     + V+ +   S  +  L++D+L+ + V    ++L    + L  ++ +   +
Sbjct: 1009 ASDGASGIDEKVVQILERQSAQMARLLDDLLEASRVTQNKIELRKRVLDLGSVVKDAADA 1068

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
            +   M    +   V+ D +      D  RL Q+   +L+NA  ++S+G  V L+A R +G
Sbjct: 1069 VKNLMDTRGVDFSVVVDPEPIWVEGDPARLQQVHVNLLNNAAKYTSRGGHVTLEAKRLDG 1128

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
              +  VK++G  IP++M  +VF  FV ++        G+G+GL++V   +  HGG VS  
Sbjct: 1129 HAVVRVKDDGVGIPKEMLDTVFELFVQSSRTLDRSAGGLGVGLTLVRGLVEKHGGTVSAR 1188

Query: 776  SS-DEGVTTINCRIPSKE 792
            S  +        R+P  E
Sbjct: 1189 SEGEGKGCEFEVRLPISE 1206


>gi|229125248|ref|ZP_04254354.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
 gi|228658208|gb|EEL13942.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
          Length = 387

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      ++ +  + L    + +  F+  V++ELR+PLT I G+ D++  +K+ + +  Q
Sbjct: 145 EVGELAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQD--Q 202

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I   +  +  LV D+ +LA ++     +N     L DLL  +   I     E N
Sbjct: 203 KHYLSIIKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKN 262

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I I       L   + D QR  Q+   +L+NA   S   S + +            VK+ 
Sbjct: 263 IHIIFSCPEDLVLLL-DEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDE 321

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE     +F RF        R   G GLGL+IV+  I LH G +S+ S     T  
Sbjct: 322 GEGIPEKDLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIF 381

Query: 785 NCRI 788
              +
Sbjct: 382 TILL 385


>gi|161503513|ref|YP_001570625.1| hypothetical protein SARI_01589 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864860|gb|ABX21483.1| hypothetical protein SARI_01589 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 936

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/316 (24%), Positives = 140/316 (44%), Gaps = 19/316 (6%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           + ++ A    ++ ++        + T   +ER+   G++    + +L           T+
Sbjct: 331 LHSLLAKPLWHFVDAINKTATEPLSTRLPEERQDELGSIAYAFNQLLN----------TL 380

Query: 540 LTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
               +  +S  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL+T+
Sbjct: 381 QVQYDNLESKVAERTHALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTT 440

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               LN KQ    +     +  LL L+N++LD + +++G   L+     L  LL++  Q+
Sbjct: 441 ---PLNIKQQGLADTARYCTLSLLTLINNLLDFSRIESGHFTLHMEETALLPLLDQTMQT 497

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   R  
Sbjct: 498 IQGPAQSKKLSLRTFVGQHVPLYFHTDAIRLRQILVNLLGNAVKFTETGG-IRLTVKRHA 556

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              IF V ++G  I       +F  F         +G G+GL+I  S   + GG + I S
Sbjct: 557 EQLIFLVSDSGKGIEIQQQPKIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGELKIDS 614

Query: 777 SDEGVTTINCRIPSKE 792
                T I+  +P +E
Sbjct: 615 IPGVGTCISLVLPLQE 630


>gi|4097445|gb|AAD09491.1| histidine kinase FIK [Nectria haematococca mpVI]
          Length = 1283

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  
Sbjct: 692 QRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNI 748

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  LL +++DILDL+ ++A  M +      L   + +  +++A K +E  + +   
Sbjct: 749 VNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFDALKTLAVKANEKFLDLTYK 808

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-------FSV 723
            D  +    + D  RL QI   ++ NA+ F+  G   + +K   +  +         F V
Sbjct: 809 VDSSVPDYVIGDSFRLRQIILNLVGNAIKFTEHGEVSLTIKERVEQRNVRPGEYAVEFIV 868

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG + + S     
Sbjct: 869 EDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRVVNLMGGDLWVISEQGKG 928

Query: 782 TTINCR 787
           +  +  
Sbjct: 929 SEFHFT 934


>gi|113476325|ref|YP_722386.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167373|gb|ABG51913.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1119

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 13/247 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT KN+ L   D++K+ F+ + S+ELR+PL  IIG T+ L     G L+S+    +  + 
Sbjct: 428 LTIKNKQLENLDKLKDEFLANTSHELRTPLNGIIGITESLIDGVAGELSSEVKNNLYLVI 487

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   L NL+NDILD   +    ++L    + + ++   V    ++ +    ++I     
Sbjct: 488 FSGKRLSNLINDILDFYKLKHRNIELKLKPVGVREVAEIVINLSSSMIGTKPLQIINSIS 547

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----------FIFSVK 724
             +    AD  RL QIF  ++ NA+ F+  G  + + A                   +V 
Sbjct: 548 YDIPFVDADENRLQQIFYNLVGNAVKFTDSG-KIEVSAKVLENQLENSSNNVSLLEITVS 606

Query: 725 NNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP D    +F  F     +   +  G GLGL+I +  + LH G + + S     +
Sbjct: 607 DTGIGIPSDKLDQIFESFEQANGSTSREYGGTGLGLAITKKLVELHKGSLCVLSEVGVGS 666

Query: 783 TINCRIP 789
                IP
Sbjct: 667 QFKFTIP 673


>gi|221134745|ref|ZP_03561048.1| two-component system sensor protein [Glaciecola sp. HTCC2999]
          Length = 876

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 125/239 (52%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
           N+  ++A E K++F+ ++S+E+R+PL  I+GF  LL+   L SLN KQ ++ +    S+ 
Sbjct: 344 NQNAQRALEAKSTFLANMSHEIRTPLNGIMGFFQLLE---LESLNKKQHEFAQNGLKSTR 400

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +L  +VNDILD + ++A  + L  S   L  ++N++   +++ ++E  + + +  D  + 
Sbjct: 401 LLSQIVNDILDYSKLEANKVTLQKSVFSLEMMINDIGSLMSSSLNEKRLELWLDIDQNMN 460

Query: 679 S---FVADRQRLLQIFSKILSNAMDFSSKG-STVILK---AARDNGDFIFSVKNNGSSIP 731
                + D  RL Q+   ++SNA+ F+ +G   + L     + D+    F V ++G  I 
Sbjct: 461 MNMNILGDETRLRQVLINLVSNAIKFTDEGFVKIKLTQTALSDDHMTVKFEVSDSGIGIN 520

Query: 732 EDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++    +F  F         +  G GLGL+I +S + L G  +++SS     +T    +
Sbjct: 521 QEQQSRIFESFEQANMNTTKKYGGTGLGLNICQSILLLMGSSLAVSSEPMVGSTFWFEL 579


>gi|255526304|ref|ZP_05393220.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium carboxidivorans P7]
 gi|296185226|ref|ZP_06853636.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255510017|gb|EET86341.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium carboxidivorans P7]
 gi|296050060|gb|EFG89484.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 1116

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 2/237 (0%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  E L+  D++K+ F    S+EL++PL  I+G +  L       L + + + +  I 
Sbjct: 422 IEEMTERLKSVDKMKDDFFAATSHELKAPLDGIVGLSKSLIDCNSNQLGNDERETLILIK 481

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L NLVNDILD + + +  + L    + +  L+N V +S  + M   ++ I    +
Sbjct: 482 NSARRLSNLVNDILDFSKIKSNDINLIMKPVDIRQLINMVTKSFKSFMSNKSVEILNKVE 541

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +     D  R+ QI   ++ NA+ F+++G  + + AA        ++++ G  I E  
Sbjct: 542 ESVPYVYGDENRIQQILYNLIGNAVKFTNEG-QIEISAAEKGDYIFITIEDTGIGIDESD 600

Query: 735 CKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F  +        Q  G GLGL + +  + LHGG + + S+    +     +P 
Sbjct: 601 IYKIFQPYNQVEGINKQYHGSGLGLYVTKKLVQLHGGELEVKSTLGEGSEFTFNLPK 657



 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 160/394 (40%), Gaps = 17/394 (4%)

Query: 411  GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            G I + ++ +V + +   + +  K    T     E + +   D  I +       +   +
Sbjct: 691  GKILIVDDESVNIKVMKNFLSEEKYTVITAASGKEALNIAYSDKNIDMV---ILDMMLPD 747

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----------ERKSLQGTLEL 520
                   + +R   +        +   +   +++ SF +          E+  L   ++ 
Sbjct: 748  MIGWEVCSILREKYSLLDLPILIATWDNRTESLVLSFKNGANDYLRKPFEKSELLARVKT 807

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            L D       +     +   T   V +         +    + K D++K  F  ++S+EL
Sbjct: 808  LIDLKHLAGEVTSLQGKVESTTKQVEELNEGFEENKKMLSQVIKNDKLKTEFFTNMSHEL 867

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNS--KQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            R+PL  I     L+++     L +     +Y+  +S ++  LL L+N+++D   ++ G +
Sbjct: 868  RTPLNVIWSTIQLIQSINANKLAAGYDMDKYLNIMSQNTLRLLRLINNLIDTTKIEGGYL 927

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
             L  +   +   + E+  S A+ +    I +   ++ +      D  ++ +I   +LSNA
Sbjct: 928  SLKLANGNIISTIEEITLSAASHVQSQGIELIFDTEVEEKYMAFDGDKIERIMLNLLSNA 987

Query: 699  MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
            + F+ +G ++ +           SVK+ G  IPED   S+F+RF        +   G G+
Sbjct: 988  IKFTEEGGSIFVNIYDLQDKVKISVKDTGIGIPEDKLDSIFDRFTQVDTSLSKKLEGSGI 1047

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GL++V+S + +  G + + S+    +     +P+
Sbjct: 1048 GLALVKSLVEMQKGRIYVKSTLGYGSEFIVELPA 1081


>gi|268318297|ref|YP_003292016.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM
           4252]
 gi|262335831|gb|ACY49628.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM
           4252]
          Length = 857

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 104/626 (16%), Positives = 235/626 (37%), Gaps = 41/626 (6%)

Query: 195 FKVLFDSLDFLVWHRDQAG-DILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
           F+ L  SL  ++W  D       + +   ++        + +           E + R +
Sbjct: 87  FRTLVQSLRAVLWEADARTFRFTYVSPQAEELLGYPVHRWLEEPDFWTAHIHPEDRDRAV 146

Query: 254 S----SSALEKNFCETVSTL-EHGNNKSYK--IVRVLNSFGEA----GIAIDVSKEITVN 302
           +    ++   ++   T   +   G     +  +  V +  G      G+ +D+++E    
Sbjct: 147 AYCRETTDRGEDHDFTYRMICADGRVVWVRDIVTVVPDEQGRPHRLRGLLLDITEEQETR 206

Query: 303 DQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +L    +   +L     +A  ++ +   + + N +   L+  +        +  +L+  
Sbjct: 207 RELEVFRQRYQDLISNNPIATGVYCR-GQVVYANPAMARLFGAERPEDLLGKTATDLI-- 263

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW---HLPNGQTLHVIVTSNP---RGGT 412
                      N +   EN   V +  E            +G++  V     P    G  
Sbjct: 264 --------HPSNLEAALENARKVVERREPVSYGRGRIQRLDGRSAIVDFRGVPITWEGAR 315

Query: 413 IWMF--ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             +F   +++ Q+    +            ++    + V   D +  L NPAF  L    
Sbjct: 316 AVLFFMWDVSEQLRTARRLAEREAQYQALFENAPAPMYV-RRDRQFLLVNPAFVRLTGYT 374

Query: 471 ENRLS-PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
              L+ PG     + A  S    +         +      E    +   + +    +  +
Sbjct: 375 AEELTAPGFDAMRLIAPQSIPVVQERLARRRQGLPVPPRYELWIRRKDGKEILVEAISIN 434

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I        +  F +++    AE  L +      +A ++K+ F++ +++E+R+P++ I+G
Sbjct: 435 IRWEGEPAVLGFFRDLSAQHEAETYLQQARRQAEEASQLKSRFLELMTHEIRTPISTILG 494

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           + DLL+      +  +  ++++ I  S   LL  ++D+LDL+ ++    +L    + LN+
Sbjct: 495 YADLLRDELADRIPPELLEFIDVIRESGRRLLGTLSDVLDLSLLETQRRRLETEAVNLNE 554

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L   ++   A       +R +     +    VAD + L +  + I+ NA+ F+  G TV 
Sbjct: 555 LARRLETDFAPMARAKGLRWETEVPEQPVRVVADEEALHRALANIVHNAVKFTESG-TVQ 613

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKS-VFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
           L+  +  G+    V++ G  +     ++ +F  F   +    R   G GLG+++   F+ 
Sbjct: 614 LRVGQHGGEGWIQVRDTGPGMDPAFARTGLFEPFRQESEGTNRHHEGAGLGMTVARRFVE 673

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
              G + + ++    TT+   +P  E
Sbjct: 674 AMRGRIEVDTAPGRGTTVTVHLPLLE 699



 Score = 42.2 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 75/241 (31%), Gaps = 40/241 (16%)

Query: 54  KVNETYSFLSEICDQLSKYHSLLTENN-------CLTIVWDGKDETPEIIGQLHQRIDIP 106
           +  ET   L        +Y  L++ N           +V+        + G       + 
Sbjct: 201 EEQETRRELEVFRQ---RYQDLISNNPIATGVYCRGQVVYANP-AMARLFGAERPEDLLG 256

Query: 107 QTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVS------ 160
           +T TDL+         H   L  A E  RK  +  +           +++GR +      
Sbjct: 257 KTATDLI---------HPSNLEAALENARKVVERRE-PVSYGRGRIQRLDGRSAIVDFRG 306

Query: 161 ------GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
                 G+ A L  +       +++E     ++L+   + ++ LF++    ++ R     
Sbjct: 307 VPITWEGARAVLFFMW------DVSEQLRTARRLAEREAQYQALFENAPAPMYVRR-DRQ 359

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN 274
            L  N ++ + T            ++ +L   +    +    A  +         E    
Sbjct: 360 FLLVNPAFVRLTGYTAEELTAPGFDAMRLIAPQSIPVVQERLARRRQGLPVPPRYELWIR 419

Query: 275 K 275
           +
Sbjct: 420 R 420


>gi|229530428|ref|ZP_04419816.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae 12129(1)]
 gi|229332201|gb|EEN97689.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae 12129(1)]
 gi|327483425|gb|AEA77832.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae LMA3894-4]
          Length = 1129

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 14/293 (4%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           A I T   DE   L  + E +  S+ E  S+I   N +     +           + ++N
Sbjct: 401 AMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNKELENNLLI----------IRKQN 450

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I +S   
Sbjct: 451 DELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQR 510

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV+D+LD   +  G + +    + L+     V +     + +  +RI      +   
Sbjct: 511 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVW 570

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F
Sbjct: 571 VSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQLEHIF 629

Query: 740 NRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 630 EPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPL 682


>gi|229152870|ref|ZP_04281053.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550]
 gi|228630690|gb|EEK87336.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550]
          Length = 484

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVIVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 1514

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 3/241 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  A  ++ EAL + D  K  F  +VS+E R+PLT ++   + L       L+  Q   +
Sbjct: 334 AYEAAKQRAEALAEIDRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLSPTQRDRL 393

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E    +S  LL LVN +LD + ++AG  +  Y    +  L  E+  S  + M    + + 
Sbjct: 394 EIAQRNSLRLLKLVNTLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTLI 453

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V       S   D++   +I   +LSNA  ++  GS + +K    +     SV + G  I
Sbjct: 454 VNCPPLGESVYVDQEMWEKIVLNLLSNAFKYTLAGS-ITVKVQGFDDHIELSVIDTGIGI 512

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     +F RF  V  A      G G+GLS+V+  + LHGG + ++SS    +     +
Sbjct: 513 PEADLPHLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSSLGQGSCFTICL 572

Query: 789 P 789
           P
Sbjct: 573 P 573



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 420 TVQVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           T+++  E     +    +     +  +S+G  +  P+  I   N A   L+  + + L  
Sbjct: 779 TLRLATEKAQQAVAATTEKLNRILATISDGFILLDPEWVITYHNTATTKLFPAKSHPLGL 838

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G  +  +  +       +D        +T    ++        L  +  LE         
Sbjct: 839 GKTLWEVWPSWV----NTDLEHRLRYAMTEQVSQQCEYHCASSLTEELWLEIYAYSFEEG 894

Query: 537 QTMLTF------VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
             +          +  +  +AE AL + +E L      + + +     EL
Sbjct: 895 LGIFLHDISDRKRSEAERHKAEIALKQYSEQLELRVAERTAKLSQTIAEL 944



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 76/248 (30%), Gaps = 34/248 (13%)

Query: 204  FLVWH-RDQAGDILWANIS-------YKKNTETEGIVFQKA----IGESRKLFKEEIKKR 251
            +  W   D    + +A          Y   +     ++ +       E   +F  +I  R
Sbjct: 846  WPSWVNTDLEHRLRYAMTEQVSQQCEYHCASSLTEELWLEIYAYSFEEGLGIFLHDISDR 905

Query: 252  MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEI 311
              S +   K     ++  ++      ++           IA     E  +  + TH  + 
Sbjct: 906  KRSEAERHK---AEIALKQYSEQLELRVAERTAKL-SQTIAELHQVEEILRGKETHYRQA 961

Query: 312  LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
            L+        FD      F +     +W +           D++   +          ++
Sbjct: 962  LNLTNTGSWEFDLASEKVFWSEQVEIIWGMKPGTFRGE--FDQVKAGIH-------PQDF 1012

Query: 372  KTWKENIFSVYKSSETHKDTWHL--PNGQTLHVIVTSN----PRGGTI---WMFENLTVQ 422
              W++N+ +  +  + H   + +  P+G    V    N     +G  I    +  ++T +
Sbjct: 1013 DLWQQNVQACIEEGKEHNLEFRVVHPDGSIHWVQAIGNAEYDSQGHPIRLRGLIMDVTER 1072

Query: 423  VDLETKYN 430
               + + N
Sbjct: 1073 KTSQERLN 1080



 Score = 38.0 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 13/150 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            +  V         IL  ++    + D    + +HN +  +L+      L    +  E+ 
Sbjct: 787 AQQAVAATTEKLNRILATISDGFILLDPEWVITYHNTATTKLFPAKSHPLGLGKTLWEVW 846

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH---LPNGQTLHVIVTSNPRGGTI 413
                    P  +N        +++ +      +      L     L +   S   G  I
Sbjct: 847 ---------PSWVNTDLEHRLRYAMTEQVSQQCEYHCASSLTEELWLEIYAYSFEEGLGI 897

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           ++  +++ +   E + +       +  + L
Sbjct: 898 FL-HDISDRKRSEAERHKAEIALKQYSEQL 926


>gi|170077489|ref|YP_001734127.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885158|gb|ACA98871.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 764

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 11/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +    L E  +A   A+  K  F+  +S+ELR+PL  I+G  +LLK S   +L+  +   
Sbjct: 364 QQNLELIEAKQAAENANRTKTRFLSSMSHELRTPLNAILGLVELLKDS--DNLDEYERGD 421

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ IS S   LL+L+ DILD++ ++AG ++L++  +     L  +K  I  +++ + I  
Sbjct: 422 LQTISDSGIHLLHLIEDILDISRIEAGRVELHFQEVDFPKFLQGIKGIIQAQINTDAIEF 481

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGDFIF 721
                 KL + V  D ++L Q+   +L NA  F+ KG  +           +       F
Sbjct: 482 ICEFPPKLPAVVSIDEKKLKQVLLNLLHNAAKFTEKGQIIFRLKLHSFPDLSETYTLLNF 541

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V+++G  I  D    +F  F        + +G GLGL+I +  + + GG +S++S    
Sbjct: 542 EVEDSGIGIEPDKLNLIFLPFEQTGKAKFKTQGTGLGLAISQEIVRMMGGKISVTSQPGI 601

Query: 781 VTTINCRI 788
            +     I
Sbjct: 602 GSKFEFMI 609


>gi|315178386|gb|ADT85300.1| sensor histidine kinase [Vibrio furnissii NCTC 11218]
          Length = 1143

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 166/413 (40%), Gaps = 32/413 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +  L+      +  G  I ++    +       G          +  E+ +   +  + 
Sbjct: 656  RYLELFDFPPGLIQVGRPIADVIRHNAEQGLCGPGEPEDHVRRRVYHLEQGTRHTSSRVR 715

Query: 522  SD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
             D  V+E    P+P    +++F ++T    AE+ L E NE L +                
Sbjct: 716  PDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQTLKEANENLEERVLERTRELEKLNKQL 775

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                       + K+ F+  VS++L  PL     F   L          + S ++E   +
Sbjct: 776  VAATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLAEVAQEDEVKRLSHHIESALS 835

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L+ D+LD++ +++G ++++  +  + D+L  +    +    +  +   ++   
Sbjct: 836  AAE---DLIGDLLDISRLESGKLEIHPQSFAIKDVLTNLNAEFSALARQQGVDFSMV--P 890

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  +D + L ++    L+NA  ++ KG  V+L      G     V +NG  I ED  
Sbjct: 891  SSLFVRSDPKLLRRVVQNFLTNAFRYNPKG-KVLLGVRHLQGKVRIDVWDNGIGIEEDKQ 949

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F         +G+GLGL+I +   ++ G  +++ S     +  +  +
Sbjct: 950  QEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHEIAMRSWPGRGSVFSLTL 1002



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 75/228 (32%), Gaps = 15/228 (6%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL++     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFDFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++                  +  ++   +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCGPGEPEDHVRRRVY-HLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             F ++TV  D E       +   E          V      ++  N    +  +  E  
Sbjct: 735 MSFTDITVFRDAEQTLKEANENLEER---------VLERTRELEKLNKQLVAATQRSERE 785

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLE 519
               +    +AA         +   LFA+ +     +DE K L   +E
Sbjct: 786 SQSKSRF--LAAVSHDLMQPLNAARLFASSLAEVAQEDEVKRLSHHIE 831


>gi|220908589|ref|YP_002483900.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865200|gb|ACL45539.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 781

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 122/248 (49%), Gaps = 11/248 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +++  L +  EA   A++ K+ F+ ++S+ELR+PL  I+GF  +L+ S    L+ K+   
Sbjct: 306 QSQAELRQAKEAADTANQAKSEFLANMSHELRTPLNGILGFAQILEQSA--ELSEKELNS 363

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I    + LLNL+NDILDL+ ++A  ++L    + L +LL+   +    +  +  I++
Sbjct: 364 VKVIHECGSHLLNLINDILDLSKIEARKLELKPGKVYLFELLHSAIEMCRIRAEQKGIQL 423

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD----FIF 721
               D  L + +  D  RL Q+   +L+NA+ F+  G     V+L++   +        F
Sbjct: 424 IYEPDPALPAIIYTDGIRLKQVLINLLNNAIKFTDHGQVTFRVVLQSLPPDSTQIVCLRF 483

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I     + +F  F   +   +   G GLGL++ ++ +   G  + + S    
Sbjct: 484 EVEDTGIGILSGQLEKIFIPFERVSDPNRYVEGTGLGLALSQTIVQHLGSQIQVKSQPGQ 543

Query: 781 VTTINCRI 788
            +     +
Sbjct: 544 GSLFWLEL 551


>gi|13476392|ref|NP_107962.1| two-component, sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
 gi|14027153|dbj|BAB54107.1| two-component, sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
          Length = 356

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 132/241 (54%), Gaps = 4/241 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
             R   ++ E    A+  K+ F+ ++S+ELR+PL  IIGF++L++    G L +++  +Y
Sbjct: 104 LNRKYMKETERAEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSARYEEY 163

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I++S   LL ++NDILD++ ++AG   L+   I L  L++E  + ++ +  +  I +
Sbjct: 164 ATDINSSGKYLLGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITV 223

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +      L S  ADR+ + QI   +LSNA+ F+ +G  + ++A   +G  + ++++NG  
Sbjct: 224 ETRIADAL-SLFADRRAIKQIVINLLSNAVKFTGQGGHISVRARNTSGALVLTIEDNGCG 282

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    +   F  V N       G GLGL+I  S   L GG + I S++   T ++ R
Sbjct: 283 IPKEALGKLGRPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRSTEGVGTIVSVR 342

Query: 788 I 788
           I
Sbjct: 343 I 343


>gi|168000947|ref|XP_001753177.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162695876|gb|EDQ82218.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 970

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 160/416 (38%), Gaps = 61/416 (14%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +L T  +        ++      +     D R +    AF          LS    I   
Sbjct: 208 ELRTHLHRFDNFLRFSLRKAPIVIGHQDNDLRHRFIYNAF--------PTLSEEEVIGKT 259

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQTMLT 541
                R    ++  D    +I     E++ +    +L  +     ++ P+   + + M  
Sbjct: 260 DLEIFRGSGVAEVMDFKREVIRKGRPEKREIHFNTDLFGEKTFLVAVEPVLSQSGEAMGI 319

Query: 542 FVNVTDSVR--------------------AERALTEKNEALRKADEIKNSFVQHVSYELR 581
                D                        E  L +      +A   K   +  +S+E+R
Sbjct: 320 NYVAMDVSEQVDKRERISRLREQVAVQKAMEAELHKTIHITEEAMRAK-QMLATMSHEIR 378

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           SPL+ ++   ++L T++   L+ +Q Q V+ + +S  ++L L+NDILDL+ V +G MK  
Sbjct: 379 SPLSGVVSMAEVLATTQ---LDEEQRQLVDVMVSSGDLVLQLINDILDLSKVQSGAMKFE 435

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                  +++  V Q         N+ ++  I D      + D  R+ Q+F+ ++ NA+ 
Sbjct: 436 AKKFRPREVVKHVLQMALANTQSKNLILEGRIYDDVPLEVIGDVLRIRQVFTNLVGNAIK 495

Query: 701 FSSKGSTVILKAA-----------------------RDNGDFIFSVKNNGSSIPEDMCKS 737
           F+ +G  V +                           D    +  V ++G  IPE    +
Sbjct: 496 FTHEG-NVTISVRVVPPPPPSIERAAKNEPAVDEGVEDTVWLLCEVSDSGIGIPESALPT 554

Query: 738 VFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F ++   +  H  +  G GLGL+I ++ + L GG++++ S +   +T +  +P +
Sbjct: 555 LFEKYTQVSATHARKYGGTGLGLAICKNLVELMGGNLTVVSKENHGSTFSFALPLR 610


>gi|153874727|ref|ZP_02002839.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152068810|gb|EDN67162.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 250

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 13/235 (5%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+ ++S+ELR+PL  I+G++++L+        +     +  I ++   LL L+ND+
Sbjct: 2   AKSQFIANMSHELRTPLNAILGYSEILQEDAQEIGEADFVTDLVKIHSAGKHLLGLINDV 61

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LDL+ ++AG M++      L  LL EV  +I   + + +  + +     LG   AD+ ++
Sbjct: 62  LDLSKIEAGKMEIYLEHFELQSLLKEVISTIQPLISKRDNILHLEFAENLGKMEADQTKI 121

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARD----------NGDFIFSVKNNGSSIPEDMCKS 737
            Q    +LSNA  F++ G  +     R                F V + G  + +     
Sbjct: 122 RQSLLNLLSNAAKFTNNG-IITFFVNRQTANSENSEFKRDWIEFGVSDTGIGMTKTQKNK 180

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +F+ F        R   G GLGL I + FI + GG +++ S  E  +T   R+P 
Sbjct: 181 IFHAFSQADASTTRKYGGTGLGLVITKCFIEMMGGTITVESDYEHGSTFKIRLPL 235


>gi|323139543|ref|ZP_08074589.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395222|gb|EFX97777.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 523

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 160/375 (42%), Gaps = 34/375 (9%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL---------------WKTEENRLSPGT 478
           ++  + +DHL   V     +GR+   N A + L               WK      S   
Sbjct: 23  QLLSQIMDHLPTAVYAVDTEGRLIYFNEAAKELSGREPEIGVDRWCVSWKLYRTDGSILP 82

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           H     A   R + +  G +   AI+   D  R  ++  +ELL D++             
Sbjct: 83  HDECPVAVTLREHRKISGVE---AIVERPDGSRVWIEPHIELLFDALGNVI-------GA 132

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +++T+  R+E  L +        D  K+ F+  +++ELR+PL  I    ++L    
Sbjct: 133 VNVLIDITERKRSENLLLDA-------DRRKDDFLALLAHELRNPLAPIHNAINVLMLEI 185

Query: 599 LGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              L  ++    +         L+ LV+D+LD++ +  G + L    I L D  +   + 
Sbjct: 186 ATPLKVERGMALLSMADRQVKHLIRLVDDLLDVSRITKGKIVLEKIKINLADAFHHAIEM 245

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              ++      ++V    +      D  R+ Q+F+ +L+NA  F+ +   + L+A R + 
Sbjct: 246 ARPEIERGGHELRVQLPPEALEIEGDTVRIAQVFTNLLNNAAKFTKQPDILYLQAERRDA 305

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + I +V++NG  I  +    +F  F       Q RG+G+GL++V S + +HGG V+  S 
Sbjct: 306 EVIVAVRDNGVGIAPENLTKIFEAFAQIDTGHQSRGLGIGLALVRSLVEMHGGTVAAHSG 365

Query: 778 D-EGVTTINCRIPSK 791
             +  +T   R+P K
Sbjct: 366 GYQKGSTFVVRLPLK 380



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 43/156 (27%), Gaps = 15/156 (9%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D  +      +     +I+ +L  A+   D    L + N +  EL   +           
Sbjct: 11  DRGEVFGFGGKKQLLSQIMDHLPTAVYAVDTEGRLIYFNEAAKELSGREPEIGVDRWCVS 70

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR---- 409
              +  R+   +                ++     +     P+G  + +    +      
Sbjct: 71  --WKLYRTDGSILPHDECPV--AVTLREHRKISGVEAIVERPDGSRVWIE--PHIELLFD 124

Query: 410 -----GGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
                 G + +  ++T +   E       + + + +
Sbjct: 125 ALGNVIGAVNVLIDITERKRSENLLLDADRRKDDFL 160


>gi|301309247|ref|ZP_07215191.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300832929|gb|EFK63555.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 846

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 100/529 (18%), Positives = 224/529 (42%), Gaps = 30/529 (5%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            I+ +    GE    ++ +    +  +      I   +     ++D+N  L   N++ ++
Sbjct: 190 DILSIAIERGEVQGLVEHTAMQVMKSETKFKI-IFDKMPWGAELYDENGVLVDINQADLD 248

Query: 338 LWEIDLAF-----LATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           ++ +         +  NP+  + + + L++   +   LN+     +    Y S    K  
Sbjct: 249 IFGVTREQAVGLNMFENPNIPKYVNQSLKNGKDIFFPLNYDFKVASQNGYYDSHHDSKTK 308

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
             L  G TL   +  N  G    +F++    +  E   N+L +++    D     +  + 
Sbjct: 309 HLLVKGVTLKDSLD-NIFGYIYIVFDDTENHIKREQIENSLARLKVSV-DTGDSILWEYD 366

Query: 452 -PDGRIKL---------SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
             + ++ +         +N   +++                      R YN+     L  
Sbjct: 367 VENDKLTVDFGLNEDINNNEGLKAIHDYNFKNQEDYKS-SIHPDDFDRVYNKQFKPLLQG 425

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            I       R+ L G     + +V  Y      +  T    V+ T ++  +R    +   
Sbjct: 426 KINNFVAAYRRILNGKTFWFNSNVRSYK---FNDDGTPNRIVSYTSNITQQREKEIELIK 482

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++AD++K++F+ ++S+E+R+PL  I+GF++++          ++  Y++ I  ++ +LL
Sbjct: 483 VKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAE---IDDEVERQSYLDIIHKNNDLLL 539

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++DILD + ++AG M  ++  + + D+  E+  + + KM   ++ +    D       
Sbjct: 540 QLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPS-DVDLIFDLDSPSVIVK 598

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +R++Q+ S  ++NA+ F++KGS + +    +       VK+ G  I  +  + +F R
Sbjct: 599 TDERRVMQVISNFVNNAIKFTTKGS-ITIYYEIEGDFIRVCVKDTGIGISAENQRRIFER 657

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+       ++G GLGL+I  + I   GG + + S +   +T    +P 
Sbjct: 658 FIKVDTF--QQGTGLGLTISRTIIEALGGKIGVDSEEGVGSTFWFTLPL 704


>gi|196039677|ref|ZP_03106981.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196029380|gb|EDX67983.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 453

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 215 ELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L+ LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 274 KQGMGIISGETDRLIQLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQ 333

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL QIF  I+ NA+ +S K   V ++A ++ G  +  VK++
Sbjct: 334 MQFIKTIER--IELIGDRNRLKQIFLNIVQNAIKYSYKNGKVYIEATKNEGQAVIKVKDD 391

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG ++I S +   TTI  
Sbjct: 392 GIGIAKEHLPYIEQSFYQINN--HAIGAGLGLAIVKKMVELHGGTINIISKEGIGTTILI 449

Query: 787 RIPS 790
           ++P 
Sbjct: 450 KLPL 453


>gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 1159

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 117/247 (47%), Gaps = 2/247 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +  +  +   ++N +L++AD++K+  + + S+ELR+P+  I G  + +  S+   L 
Sbjct: 463 QTQELQQQVKLTHKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQ-DLT 521

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q + +  I  S+  L  LV+D+LD   +  G ++++   +    ++  V       + 
Sbjct: 522 EGQQKQLGLIIKSADGLARLVDDLLDYHQMRYGQLEIHPQPVSSKGVIRLVLDLCQHLVQ 581

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +  IS  +L   +AD QRL Q+   ++ NA+ ++ +G  V+L A  +       V
Sbjct: 582 AKPLTLVDISPVELPPVLADEQRLEQVLYNLVGNAIKYTPQG-KVVLSALVEGNFLRIKV 640

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I  D  + +F   V  +    ++G GLGLSI    ++L GG + + S     +T
Sbjct: 641 TDTGIGIAPDHLEHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGST 700

Query: 784 INCRIPS 790
               +P 
Sbjct: 701 FAFTLPL 707


>gi|325571334|ref|ZP_08146834.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
 gi|325155810|gb|EGC68006.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
          Length = 573

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 163/425 (38%), Gaps = 35/425 (8%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKY 429
           + T ++    +       K     P+ Q + +  T         +   L+ Q+      Y
Sbjct: 178 FHTLRQRNRPIQTILPVVKKMITSPDQQAIIMQETPEHDE-LYQLINQLSEQMSQTYRAY 236

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     +  L  GV +   + ++ L NP  +                   A    +
Sbjct: 237 AASEQQLYGLLSELMIGVFIINEENQLLLLNPTMQEQLGM------------ETAPILPQ 284

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTMLTFVNVTD 547
            + E         +I  F+DE         L  +   VL+ ++      Q +    ++T 
Sbjct: 285 PFTEVIHDTQLIQLIYQFNDETPIFHAETTLSGERSKVLDVTLRSFQENQLIGISYDLTR 344

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+              ++  FV +VS+EL++P+T++IGFT+ L         + Q+
Sbjct: 345 IRQLEK--------------MQKDFVGNVSHELKTPVTSLIGFTETLLDGAKEDPETLQT 390

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++E I   +  L NL+ DI+ L+  D+   +     I  ++LL +V Q+      +  +
Sbjct: 391 -FLEIIQKDAYRLKNLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAVKKQL 448

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
             +     +       ++ L  I   ++ NA+ +S  G  + L  +  +   +F V++ G
Sbjct: 449 TFQFEGPEQFI-LSTKKELLQPIVKNLVENAVTYSKPGGVITLSYSEQDDQLLFQVQDQG 507

Query: 728 SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I E+  + +F RF            G GLGL+IV+ +  L GG + + S  +  +T  
Sbjct: 508 IGIDEEDQERIFERFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGSTFT 567

Query: 786 CRIPS 790
             +P 
Sbjct: 568 VTLPL 572


>gi|149174474|ref|ZP_01853100.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
 gi|148846584|gb|EDL60921.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
          Length = 488

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 160/375 (42%), Gaps = 21/375 (5%)

Query: 425 LETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTEENRLSPGTHI 480
           L+ + N+L+K +      +D+L  G+ VF     ++ +N A  S L    + + +     
Sbjct: 109 LKARVNSLLKKEALVESVLDNLEIGILVFDAKQELEFTNQAANSFLLAGTDQKQTTSESG 168

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            ++           +   L A  I     ERK  + T    ++   E++   + N Q   
Sbjct: 169 LSLGKPVVEQTVIPELAKLLAKTI-----ERK--EATFRRRTE--FEFTSNGISN-QYRA 218

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKN---SFVQHVSYELRSPLTNIIGFTDLLKTS 597
              N+TD  +         E +    + K     FV  V++EL++P++ I  + ++L   
Sbjct: 219 IATNLTDENQVALGTVVVVENIGVEADEKTQHAEFVSSVAHELKTPMSGIKAYIEMLIDG 278

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  +  +   +I+     L  LVN +L+LA +++G++++      LND+L      
Sbjct: 279 DCEP--EEADELYGFINDQIDRLTRLVNSMLNLARIESGVVEIKRHDHELNDILKTAADV 336

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           I+    E +I+              D+  L Q    +LSNA+ ++  G  V L++  ++ 
Sbjct: 337 ISPTATEKDIKFTAELSDMYLPVFVDKDMLGQAIINLLSNAVKYTPNGREVRLRSRMEDT 396

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFI-NLHGGHVSIS 775
             +  V++ G  IPE+    +F+RF     +     G GLGL++V   + N+H G +S+ 
Sbjct: 397 TAVIEVRDTGLGIPENSLPHIFDRFYRVPENNRSAAGTGLGLALVHFIVTNVHNGSISVQ 456

Query: 776 SSDEGVTTINCRIPS 790
           S  +  T     IP 
Sbjct: 457 SQVDEGTCFTVTIPL 471


>gi|327484261|gb|AEA78668.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae LMA3894-4]
          Length = 1176

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 522 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 575

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 576 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 633

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 634 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 690

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 691 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 750

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 751 VIWSPNSLLLANLDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 809

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 810 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIKVS 869

Query: 788 IPS 790
           +P 
Sbjct: 870 LPL 872



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 501 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 556


>gi|197122801|ref|YP_002134752.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196172650|gb|ACG73623.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 761

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 110/634 (17%), Positives = 225/634 (35%), Gaps = 59/634 (9%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           LFD     +      G I+  N  + ++T  + E ++ +  +          +     + 
Sbjct: 16  LFDEAAVGLCLVAPDGTIVRVNAPWLRSTGFQHEQVLGEHIVSLFPGTRDMALAMHARAR 75

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL----THTYEI 311
           +           T+          +  +   G  G+ I   +  +   +         EI
Sbjct: 76  AGHRVEVPRHAQTVNGRETWWEGSIAPVAMEGGTGLLITAREVRSGAGEQPAGCASCTEI 135

Query: 312 LHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
           +  L       I I      +   N  + E   +     +   S ++ L   R  + LP+
Sbjct: 136 VDRLLACVPEGITIATGPEVVTIANSRYAEERLLGSWNRSVGLSMEQWL--ARVEHYLPD 193

Query: 368 QL------NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIW 414
                   +   W+       +S    +     P+G  + V   + P         G I 
Sbjct: 194 GKTPAAVEDLPLWR--ATRRGESVRDAELVVRRPDGTRMSVTCNAEPVRDAAGDVVGGIV 251

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            + ++T Q   +    T  +      + + + V V  PDG ++L N A+ +    +    
Sbjct: 252 AWRDVTEQRRQQAALRTTEERFRLLAEAMPQIVCVLAPDGAVELVNRAWTAFSGLDVAAT 311

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +     R +     +   E     L        +   ++  GT            + P+ 
Sbjct: 312 ARTGWERVLHPDDVQAARECRHLALKRLEPQDVELRYRAADGTY-----RWFLSRLAPVV 366

Query: 535 NAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               ++ F    +++    RAE  L + N  L +AD  K+ F+  +S+ELR+PL  I   
Sbjct: 367 EGGRVVRFIGAGMDIERRKRAEAELRDANAKLVEADRRKDEFLGMLSHELRNPLAPIRNS 426

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + +L+ +  GS  + ++Q V  I   +  L +LV+D+LD+  +  G ++L  S + L ++
Sbjct: 427 SFILRHATPGSDAASRAQQV--IERQTGHLTHLVDDLLDVTRISRGKIELRRSAVDLREV 484

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +    +     + +  +  +          + D  R+ Q+   +L+NA  F+ +G  V++
Sbjct: 485 VLRAAEDFRLPLDDRGVSFRASVPEAPVRALVDATRITQVVGNLLTNAAKFTRRGDEVMV 544

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS----------- 759
               + G+    V++ G+ I   +  S+F  FV              L+           
Sbjct: 545 SLTVEGGEAAIRVRDTGAGIDPAIASSIFQPFVQGERT---------LARSEGGLGLGLA 595

Query: 760 IVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
           +V     LHGG  S++S           R+P  +
Sbjct: 596 LVRGIAELHGGAASVTSEGKGRGAEFLVRLPLGQ 629



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 17/179 (9%)

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
           +      +      +      G V G     R         ++ E   +   L      F
Sbjct: 223 RRPDGTRMSVTCNAEPVRDAAGDVVGGIVAWR---------DVTEQRRQQAALRTTEERF 273

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           ++L +++  +V      G +   N ++   +  +     +   E      +    R    
Sbjct: 274 RLLAEAMPQIVCVLAPDGAVELVNRAWTAFSGLDVAATARTGWERVLHPDDVQAARECRH 333

Query: 256 SALEKNFCETV---STLEHGNNKSY-----KIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
            AL++   + V        G  + +      +V         G  +D+ +      +L 
Sbjct: 334 LALKRLEPQDVELRYRAADGTYRWFLSRLAPVVEGGRVVRFIGAGMDIERRKRAEAELR 392


>gi|116625704|ref|YP_827860.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228866|gb|ABJ87575.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 1134

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 102/515 (19%), Positives = 193/515 (37%), Gaps = 64/515 (12%)

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE---QLNWKTWKENIFSVYKSSE 386
           F N ++     I   +    P++    E         E        T++E +    + S 
Sbjct: 75  FCNDAYRPTLGIKDTWALGAPADRVWAEIWPDIGPRIESVMHTGIATYEEGLLLFLERSG 134

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL---ETKYNTLV---------K 434
             ++T+H     T      ++  G    M   +T + +    E +  TL           
Sbjct: 135 FPEETYH-----TFSYSPLADDDGVITGMLCVVTEETERLIGERRVETLRGLASAMATTN 189

Query: 435 VQGETIDHLSEGVA------------VFGPDGRIKL-------SNPAFRSLWKTEENRLS 475
            + E ++ L + ++            +FG  G ++L       +N          +    
Sbjct: 190 TEEEVLEALKQQLSRNQKDLPFTLTYLFGEGGGVRLRSFSGISANHPLAVESLEWDAATP 249

Query: 476 PGTH----------IRNIAATCSRYYNESDGWD---LFAAIITSFDDERKSLQGTLELLS 522
              H          I ++   C      +  W+     A ++      ++   G L + +
Sbjct: 250 WPVHEIALHPAPRLIEDLPERCDSATIPAGDWNNPVELAVLVPIRQQGQERPAGFLVVGT 309

Query: 523 DSVLEYSI-----IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +   +Y       + L + Q +   +    +  AER    + EAL + D  K +F  +VS
Sbjct: 310 NPYRQYDAAYSGFVDLLSGQ-IAAALANARAYEAERR---RAEALAEIDRAKTTFFSNVS 365

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT ++   + L   +  + + +Q   +E +  +   L  LVN +LD + ++AG 
Sbjct: 366 HELRTPLTLMLSPVEELLAQERTAADPEQRHLLELVHRNGLRLQRLVNTLLDFSRIEAGR 425

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++  Y    L     E+  +  + M +  +  +V           DR    +I   +LSN
Sbjct: 426 VRAVYEPTDLAHYTAELAANFRSAMEKAGLEFRVECGELSAPVYVDRDMWEKIVLNLLSN 485

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVG 755
           A+ F+  GS V ++           V++ G  IP      VF RF  VS A      G G
Sbjct: 486 ALKFTFTGS-VTVRLRTAGEFVELVVQDTGIGIPSAELPRVFERFHRVSGAKGRTIEGTG 544

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +GL++V+  + LH G + + S     TT   ++P 
Sbjct: 545 IGLALVQELVKLHAGSIEVESELSRGTTFQVKLPL 579



 Score =  207 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 142/375 (37%), Gaps = 9/375 (2%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLS--EGVAVFGPDGRI-KLSNPAFRSLWKTE-ENRLSP 476
             + D E              D      GV     D  +    N      +  + E   + 
Sbjct: 756  RRRDAEAALKESQATLQSFYDSSPFLMGVIEIEGDNIVPVYCNLTTAGFFGVDLETFPAQ 815

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             + I  ++      +               F+ E          LS +V       +   
Sbjct: 816  TSEILGVSRATDETWIAHYRQSQREGRSIHFEYEHVKKSSESCWLSATVNHLGAGRIGGP 875

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +      ++T+  + E  +   NE LR+A+     F    S++L+ PL  +  ++ LL  
Sbjct: 876  RFSFVAEDITERKKQEELIRRSNEELRRANADLEQFAYSASHDLQEPLRQVAIYSQLLGR 935

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV-DAGIMKLNYSTIVLNDLLNEVK 655
                 L+ K S+Y+ Y    +  +  L++D+L  +              +  N  L  V+
Sbjct: 936  KYGSRLDGKASEYLTYCIEGAQRMEMLISDLLAYSQATKTSNPSAEPEFVDANGALEAVR 995

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAAR 714
            +++AT + E      VI+   L     D   L+ +F  ++SNA+ +   +   V + A +
Sbjct: 996  KNLATTIEETR---AVITAAHLPVVHGDGVPLMHVFQNLISNALKYRGKERPDVRIWAEQ 1052

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            D+G + F+V++NG  IP+   + VF  F     R    G G+GL+I +  +  +GG + +
Sbjct: 1053 DSGWWRFAVQDNGIGIPKPYQEQVFGIFKRLHDRKDYPGTGIGLAICQRVVERYGGKIWV 1112

Query: 775  SSSDEGVTTINCRIP 789
             S     +T    +P
Sbjct: 1113 ESDGRQGSTFFFTLP 1127


>gi|319892475|ref|YP_004149350.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162171|gb|ADV05714.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464422|gb|ADX76575.1| signal transduction histidine kinase SsrB [Staphylococcus
           pseudintermedius ED99]
          Length = 585

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 169/419 (40%), Gaps = 36/419 (8%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKV 435
            I +  +  +T        N      I T +  G     F  ++  +        T   +
Sbjct: 192 RITNPLRQLKTQAKEVARGNYDKRVPIQTRDEIGELAMTFNKMSRSIQTHIDALTTSKNI 251

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +   I+ + EGV       +I +SN     +                        +NESD
Sbjct: 252 RDTLINSMVEGVLGINHKKQIIISNALAERMLSE---------------------FNESD 290

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
                  I  +F+ ++   +       +    + +I + + + + T            A+
Sbjct: 291 REMFNLQIEDTFESQKTEYREY-----EMNQRFYVIIMSHIKKIQTNGEGGLV-----AI 340

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                   + +++K  F+  VS+ELR+P++ + G+T+ +    + +   + ++++  +  
Sbjct: 341 VRDMTNEHELEQVKKDFIASVSHELRTPISLLQGYTESIVDGVV-TEPEEINEFLTVVLD 399

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  L  LVN++L++A +DA  + +      + DL+ ++      +  E N+ +    DG
Sbjct: 400 ESKRLSRLVNELLNVAKMDAEGLNVTQELQPMQDLVRKMAMKYRQQAQELNLTLDFQMDG 459

Query: 676 KLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           ++ S    D  R+ Q+ + ++ NA  ++  G T+ +KA  D+   I ++++ G  I    
Sbjct: 460 EMASLWYYDFDRMEQVLTNLVDNASRYTQPGDTISIKATADHDHQILTIEDTGVGIAPQH 519

Query: 735 CKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            + +F RF       +R   G GLGL I    +N HGGH+ + S  +  T     +P K
Sbjct: 520 LEKLFERFYKVDSARKRGSQGTGLGLFITRMIVNAHGGHIRVESELDKGTKFIISLPKK 578


>gi|258623081|ref|ZP_05718094.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM573]
 gi|258584694|gb|EEW09430.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM573]
          Length = 1177

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 14/293 (4%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           A I T   DE   L  + E +  S+ E  S+I   N +     +           + ++N
Sbjct: 449 AMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNKELENNLLI----------IRKQN 498

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G L +     ++ I +S   
Sbjct: 499 DELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIIISSGQR 558

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV+D+LD   +  G + +    + L+     V +     + +  +RI      +   
Sbjct: 559 LATLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSNHLLGKKTLRIINQVSEQPVW 618

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F
Sbjct: 619 VSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQLEQIF 677

Query: 740 NRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 678 EPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMVGTTFSFTLPL 730


>gi|325914828|ref|ZP_08177163.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538919|gb|EGD10580.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 1056

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L      L  A   K+ F+ ++S+ELR+PL + +  + LL  +K G+L+  Q +Y 
Sbjct: 348 AQGQLVRNGNELATASRYKSEFLANMSHELRTPLNSALILSKLLADNKDGTLSPDQVKYA 407

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I +S+  LL L+NDILDL+ ++AG ++L   T+  + +L  ++ +      +  + ++
Sbjct: 408 QAILSSNNDLLALINDILDLSKIEAGHVELADETVATSSVLQRLRDTFEPLARQKGLTLE 467

Query: 671 VISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D G     V D QRL QI   +L+NA+ F+ +G+  +   A   G  +F V + G  
Sbjct: 468 IGADAGAPTQLVVDNQRLQQILKNLLANAIKFTERGTVSLAIQAGAPGRVLFKVNDTGIG 527

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 528 IAREQTEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLE 587

Query: 788 IPS 790
           +P+
Sbjct: 588 VPT 590


>gi|283853302|ref|ZP_06370551.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571283|gb|EFC19294.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 575

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 129/247 (52%), Gaps = 13/247 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  + EA  +A   K  F+ ++S+E+R+PL  I G   L+  S   +L+  Q +Y+   
Sbjct: 185 ELAIQKEAAEQASRAKTEFLANMSHEIRTPLNGIFGMIQLIDNS---NLDEYQKEYLVAA 241

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   L +L++ ILDL+++++G   L  +T  L+D+   V++  A +     +  +   
Sbjct: 242 KHSCKRLTSLLSHILDLSSIESGKFSLRENTFSLSDIKESVRELFAIESARKKLLFQFNL 301

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNN 726
           D +L S  + D  R+LQI   +  NA+ F+  GS V + A        D    +F+++++
Sbjct: 302 DLRLPSRVIGDEARVLQILFNLAGNAIKFTESGS-VRIDACELPRHDPDACRVLFTIEDS 360

Query: 727 GSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP+ + K +F+ FV    A++ + +G GLGL+IV   + L GG +++ S +   TT 
Sbjct: 361 GIGIPDQLQKEIFDPFVQAEGAYKRRFQGAGLGLAIVRKLVRLLGGTLAVDSVEGEGTTF 420

Query: 785 NCRIPSK 791
              +P +
Sbjct: 421 YLSLPFR 427


>gi|254521023|ref|ZP_05133078.1| response regulator receiver domain protein [Stenotrophomonas sp.
           SKA14]
 gi|219718614|gb|EED37139.1| response regulator receiver domain protein [Stenotrophomonas sp.
           SKA14]
          Length = 1019

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 3/244 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L      K+ F+ ++S+ELR+PL + +    LL  +K G+L  +Q +Y 
Sbjct: 329 AQGQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLTDEQVKYA 388

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I +S+  LL L+NDILDL+ ++AG ++L    +V++ ++  ++++      +  + ++
Sbjct: 389 RAILSSNNDLLALINDILDLSRIEAGHVELADEVVVVDSVVQRLRETFEPMARQKGLALQ 448

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +D    S  VAD QRL QI   +L+NA+ F+  G   +   A  +G   F V + G  
Sbjct: 449 IEADALAPSQLVADSQRLQQILKNLLANALKFTEHGKVSLHVRAAGSGRIRFEVADTGIG 508

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG + + S     +     
Sbjct: 509 IAREQLQVIFEAFRQADGSTRRRYGGTGLGLSISRDLAERMGGSIHVDSEPGRGSCFILE 568

Query: 788 IPSK 791
           +P +
Sbjct: 569 LPLQ 572


>gi|189466068|ref|ZP_03014853.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM
           17393]
 gi|189434332|gb|EDV03317.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 131/241 (54%), Gaps = 3/241 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + L + NE   +++++KN+F+ ++++E+R+PL  I+GFT++L  +   S   ++  +
Sbjct: 47  KRLKTLQQLNEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTNVLAETDNLS-REERMIF 105

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I+ +   L+ ++ND+LD + ++A  M+     + +N L+ E+  +       + I+I
Sbjct: 106 LKEINDNKDFLVQMINDLLDFSKIEANTMEYKDGDVDVNALIQEMCAAENAHPRPSGIQI 165

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           + +        + DR R  Q+ + ++ NA+ F+ +GS  I      N +F F V + G  
Sbjct: 166 EFVEKLPQCRLMIDRVRFAQVINNLVKNALKFTEQGSVKIGYRRLSNNNFYFYVADTGCG 225

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I E+  +++F RFV   +    RG GLGLSI +S +  +GG + + S     +T    +P
Sbjct: 226 IDEESRRAIFERFVKMNY--NIRGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLP 283

Query: 790 S 790
           +
Sbjct: 284 A 284


>gi|313674526|ref|YP_004052522.1| pas/pac sensor signal transduction histidine kinase [Marivirga
            tractuosa DSM 4126]
 gi|312941224|gb|ADR20414.1| PAS/PAC sensor signal transduction histidine kinase [Marivirga
            tractuosa DSM 4126]
          Length = 1514

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 109/677 (16%), Positives = 247/677 (36%), Gaps = 82/677 (12%)

Query: 159  VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILW 217
            V G  A      L G   ++ E     ++L +     ++  ++    +W  D     ++W
Sbjct: 874  VIGGKA----RRLYGAIQDITEQKFAEQELKSVTERLQLATEAASIGIWDWDIVRNKLIW 929

Query: 218  -----------------ANISYKKNTETEGIVFQ----KAIGESRKLFKEEIKKRMISSS 256
                             A  +++     + I       +   +    F    +     +S
Sbjct: 930  DDKMYEIFNINPSEFKGAYEAFEVMVHPDDIQQANKDVQNAIDGVSEFDSNFRIIWKDNS 989

Query: 257  ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQ----LTHTYEIL 312
                     +   ++G       +R++ +        D++KE    +Q    L     IL
Sbjct: 990  IHYLQANGLIERDKNGK-----AIRMVGTNW------DITKEKIAKEQVELALQEKNNIL 1038

Query: 313  HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
             ++  A    D+N  + + N+    +       +      D   + + S        ++ 
Sbjct: 1039 ESIGDAFFAVDRNWEITYWNKEAENVLGRKREEIVGKNLWDVYADAIDS--------DFY 1090

Query: 373  TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
                      +  E   + ++    +   V    +P G +I+ F+++T + + + +    
Sbjct: 1091 RHYHKAMETGEDVEF--EEYYPTVNKWFTVSAYPSPEGLSIY-FKDVTFKKEADLRLVQA 1147

Query: 433  VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
             +   +  +  S+ +  +       LS+  +RS              +          ++
Sbjct: 1148 NERFEKVTEATSDAIWDWD-----ILSDSFYRSDAIDRFFGEGTVKRLEE-KEFWRDSFH 1201

Query: 493  ESDGWDLFAAIITSFDD---ERKSLQG-------TLELLSDSVLEYSIIPLPNAQTMLTF 542
            + D  ++  ++ ++  D   +R  +Q         +  + D  L          + +   
Sbjct: 1202 QEDMKNVQESLQSALQDSSCKRWEMQYRIFNNKDEIVYVRDRALIVRNQQGEAIRMIGAM 1261

Query: 543  VNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             ++T+    E+ L E N++L+K        ++    F    S++L+ PL  +  F DLLK
Sbjct: 1262 TDITERKNFEKQLIELNDSLKKHTHELELTNQELEQFAYIASHDLQEPLRMVTSFMDLLK 1321

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                  L+ K  QY+ + +  +  +  ++ D+LD +   AG + ++   +    ++++ K
Sbjct: 1322 RKYEDQLDDKALQYIGFATDGAKRMKTIILDLLDYSR--AGKLNMSQVKVSTKKIVDDYK 1379

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAA 713
                  + E N+R++V     L +  +    L Q    +L NA+ +S KG    + + A 
Sbjct: 1380 ILRKKAISEKNVRLEVY---NLPTVKSYPAPLTQTIHCLLDNAIKYSRKGVHPIIKIDAE 1436

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              +G + F V++NG  I     + +F  F    +R +  G G+GL+I +  +   GG + 
Sbjct: 1437 DLDGFWQFKVEDNGIGIEPKFFEKIFIIFQRLHNRDEFSGSGIGLAIAKKHVESWGGTIR 1496

Query: 774  ISSSDEGVTTINCRIPS 790
            I S+    +T    IP 
Sbjct: 1497 IESTIGEGSTFYFTIPK 1513



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 144/404 (35%), Gaps = 45/404 (11%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            +  K+L N +S     ++++  +V   D  G  L  N +     E  G   ++ + +  
Sbjct: 283 EINRKRLENELSHL---YEAIPDIVSVGDFEGRFLRINQA---GCELLGYEEEEILYQGF 336

Query: 242 KLFKEEIK-----KRMISSSALEKNFCETVS-TLEHGNNKS--YKIVRVLNSFGEAGIAI 293
           + F          K +    A E+NF   V    + G      +     +N       A 
Sbjct: 337 EKFIHPNDLHIAYKELGRLEAGERNFGFEVRFLTKSGEILWLSWYCKVNINEGLIYCSAK 396

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D+++E  +  QL      L    V    +D      F +     L E D    +  P+ +
Sbjct: 397 DITQEKKL-SQLNRQASDLAK--VGSWEYDLIEDDLFWSEKVHHLHETDPN--SFEPTIE 451

Query: 354 ELLEFLRSANK-LPEQLNWKTWKENIFSVYKS---SETHKDTWHLPNGQTLHVIVTSNPR 409
             ++F    +K   +   +K+  E ++  Y++   S + K+ W       + VI +    
Sbjct: 452 RAIDFYNEDHKSYVKDQIYKSINEGVYLDYEAIIVSRSKKERW-------IRVIASPEYI 504

Query: 410 GG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFR 464
            G     I  F+++T + + E       +      D  + G+A   P  G+I L+N  + 
Sbjct: 505 QGKCVKLIGSFQDITDRKEAELGVVRSEEKFRTIFDIATLGIAQVDPLTGKISLANSYYE 564

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS---FDDERKSL--QGTLE 519
            +     + L   + +       +   +    W+LF+        + +E++ L   GT+ 
Sbjct: 565 VITGYTIDELLNMSFVE-----FTHPDDRKKDWELFSKAAHGEGEYRNEKRYLKKDGTIV 619

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            +   V           +T+    ++TD   AE  L    + L 
Sbjct: 620 WVRLHVAFIRDEKGKPLKTVTICEDITDRKEAESRLQTLADNLP 663



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 70/509 (13%), Positives = 162/509 (31%), Gaps = 63/509 (12%)

Query: 46   RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
            + R       + T    +E   +       L        +WD      ++I         
Sbjct: 878  KARRLYGAIQDITEQKFAEQELKSVTERLQLATEAASIGIWDWDIVRNKLIWDDKMYEIF 937

Query: 106  PQTDTDL----LSFENWLKFHHYIK----LSKATEKLRKEGQSFDLVAETQNDCAIKIEG 157
                ++      +FE  +      +    +  A + + +   +F ++ +  +   ++  G
Sbjct: 938  NINPSEFKGAYEAFEVMVHPDDIQQANKDVQNAIDGVSEFDSNFRIIWKDNSIHYLQANG 997

Query: 158  ---RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGD 214
               R     A      + G   ++ +  +  +++   +     + +S+    +  D+  +
Sbjct: 998  LIERDKNGKAI----RMVGTNWDITKEKIAKEQVELALQEKNNILESIGDAFFAVDRNWE 1053

Query: 215  ILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISS------SALEKNFCETVS 267
            I + N   K+     G   ++ +G++   ++ + I             +  +  F E   
Sbjct: 1054 ITYWN---KEAENVLGRKREEIVGKNLWDVYADAIDSDFYRHYHKAMETGEDVEFEEYYP 1110

Query: 268  TLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI--AIFDQN 325
            T+    NK + +    +  G +    DV+ +   + +L    E    +T A   AI+D +
Sbjct: 1111 TV----NKWFTVSAYPSPEGLSIYFKDVTFKKEADLRLVQANERFEKVTEATSDAIWDWD 1166

Query: 326  RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
                  + SF     ID  F        E  EF R +     Q + K  +E++ S  + S
Sbjct: 1167 ----ILSDSFYRSDAIDRFFGEGTVKRLEEKEFWRDS---FHQEDMKNVQESLQSALQDS 1219

Query: 386  -----ETHKDTWHLPNGQTL---HVIVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVK 434
                 E     ++  +         ++  N +G  I M     ++T + + E +   L  
Sbjct: 1220 SCKRWEMQYRIFNNKDEIVYVRDRALIVRNQQGEAIRMIGAMTDITERKNFEKQLIELND 1279

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIAATCSRYYNE 493
               +                 ++L+N           + L      + +      R Y +
Sbjct: 1280 SLKK-------------HTHELELTNQELEQFAYIASHDLQEPLRMVTSFMDLLKRKYED 1326

Query: 494  SDGWDLFAAIITSFDDERKSLQGTLELLS 522
                     I  + D  ++     L+LL 
Sbjct: 1327 QLDDKALQYIGFATDGAKRMKTIILDLLD 1355


>gi|284036807|ref|YP_003386737.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283816100|gb|ADB37938.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 644

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 123/665 (18%), Positives = 235/665 (35%), Gaps = 84/665 (12%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE- 239
                    + IS+F+ ++D              ++  N     +     +  + A+G  
Sbjct: 7   LQGILDASPDAISIFETVYDESGSP-----ADFRLVMTNQV---SASIMALSMEHAVGRL 58

Query: 240 ----SRKLFKEEIKKRMISSSALEKNFCETVST-LEHGNNKSYKIVRVLNSFGEAGIAID 294
               + +  + E    +   S   K     V T    G     K               D
Sbjct: 59  FSELTPEELQNERFNALKQVSETGKPLDREVYTHRTDGLYLWVKSSFRRFENYVVVTYTD 118

Query: 295 VSKEITVNDQLTHTYEILHNL----TVAIAIFDQ---------NRYLQFHNRSFVELWEI 341
           ++K      Q      +L  +     + I ++           N  +   NR   EL   
Sbjct: 119 ITKRKEAETQREIQTTLLERVFATTLLGIVVYQAVRSPLDEITNFRVVKVNRVAKELISG 178

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTL 400
                       +LL  L   +  P  +N         +V ++    + + ++LP  +  
Sbjct: 179 SADITG------QLLTDLFPESVTPATMN------RFRNVCETGIPFEIEYYYLPLAKWY 226

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-------- 452
           +++      G  +  + ++T +   E        +     + +  G+    P        
Sbjct: 227 NIVGVQLGDG-LMLTYVDITARKQAEEASTQQSSLLLRISESVKIGILTTEPILDDTSRI 285

Query: 453 -DGRIKLSNPAFRS------------------LWKTEENRLSPGTHIRNIAATCSRYYNE 493
            D R    N   ++                       +  ++  TH+     T  R    
Sbjct: 286 IDFRYTYFNEQAKNSLPPDWQQVSDQTVRSINFAGNADQMVALLTHVVETGETLRRETIT 345

Query: 494 SDGWDLFAAI-------ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            DG  +F+ +       I +F D  +  Q   +    + LE  +     A ++       
Sbjct: 346 PDGKIIFSVVSKLGTGTIITFLDVTQQRQAEEQARYSAELEQKVADRTQALSLTLSELEQ 405

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSK 605
                ERAL  + E      E+K  FV   S+E R+PLT I+  T LL+  +++ +   +
Sbjct: 406 SRNELERALAVEREL----SELKVRFVSMASHEFRTPLTTILTSTSLLEKYAEITNQQDR 461

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q +++E I  +   L +++ + L L  +  G + ++   + L+ L++E    I     + 
Sbjct: 462 QLKHIERIKIAVKHLNDILEEFLSLEKLQEGQINVHPVAVDLSQLVSETVHYIQDAFGQK 521

Query: 666 N-IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             I + +   G   S   D     +I   +LSNA+ +S   + + ++A  DN   I SV+
Sbjct: 522 QSIEVALSCPG---SINLDPSLFRKILINLLSNAVKYSGPETEIKIQAFCDNSLLILSVQ 578

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  I ED  K +F RF    +    +G GLGL IV  +I L GG ++++S     TT+
Sbjct: 579 DQGIGISEDDQKRLFERFFRAKNVSTIQGTGLGLHIVNRYIRLMGGQINLASELNVGTTL 638

Query: 785 NCRIP 789
              +P
Sbjct: 639 TVTLP 643


>gi|221639295|ref|YP_002525557.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221160076|gb|ACM01056.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 733

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 198/515 (38%), Gaps = 36/515 (6%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSF-VELWEIDLAFLATNPSNDELLEFLRSAN- 363
            +    +  +    A+FD +  L   N  F + + +I    L    S    ++ +  +  
Sbjct: 87  QNLANAIETVQEGFALFDADDVLVLCNSRFGMHMLDI-QEHLKPGLSFGGYIDRVSRSRY 145

Query: 364 -KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             LPE    + W       +    +  +   + + + L V       GGT+ +  ++T  
Sbjct: 146 LALPEAETPEDWAIRRKRRHYDRHSIFNVRLIWD-RWLQVSEHRTADGGTVILQTDVTDL 204

Query: 423 VDLET-----KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           + +E        +   +V   T+DH+++GV +F  +GR+   N    SL     NR   G
Sbjct: 205 IRIERLERGKMLDDQARVIRATLDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRLG 264

Query: 478 THIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                +    +   +  +G D            ER  L   L    + +L+     +P+ 
Sbjct: 265 VSFGYLLERFAHEISFGEGMDAAHLEAWVQARHERAPLSFELRRHDELILDVFAQEMPDR 324

Query: 537 QTMLTFVNVTDSVRAERALTEKNE------------------ALRKADEIKNSFVQHVSY 578
             +++F +VT    A  AL+  NE                     +A+  ++ FV   S+
Sbjct: 325 GFVMSFTDVTAERAAIEALSRANETLEARVMERTLELEDALGHAERANASRSRFVAAASH 384

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L  PL+    F   +    +     +  + +     +   +  ++  +LD++ +++G  
Sbjct: 385 DLLQPLSAAKLFIATIGDEAVA---PESREALTKAQKALDSVEGILGALLDISKLESGRA 441

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            ++   + L+ L+ ++    A       +R+ V+    +    +D   L +I   ++ NA
Sbjct: 442 AVSIQPVRLDRLMAQLSDEFAPIAAARGLRLTVLPSSAV--VASDPTYLRRILQNLIGNA 499

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLG 757
           + +++KG  V++ A    G     V + G  I E   +++F  F           G+GLG
Sbjct: 500 IRYTAKG-RVLVGARMTAGMVRLEVWDTGPGIAEADQEAIFKEFHRLDAPASPAEGMGLG 558

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L+IVE    L G  + + S     T    ++P  E
Sbjct: 559 LAIVERACGLLGHPLGLRSEIGRGTRFMLQVPRAE 593



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 94/332 (28%), Gaps = 23/332 (6%)

Query: 239 ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR-VLNSFGEAGIAIDVSK 297
              +  ++   +R          F   +       ++  ++        G   +  DV+ 
Sbjct: 149 PEAETPEDWAIRRKRRHYDRHSIFNVRLIW-----DRWLQVSEHRTADGGTVILQTDVTD 203

Query: 298 EITVND---------QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
            I +           Q       L ++   + IFD    L   N+    L  I +     
Sbjct: 204 LIRIERLERGKMLDDQARVIRATLDHINQGVCIFDAEGRLVGWNQRLGSLLAIPMNRFRL 263

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             S   LLE         E ++    +  + + ++ +          +   L V     P
Sbjct: 264 GVSFGYLLERFAHEISFGEGMDAAHLEAWVQARHERA-PLSFELRRHDELILDVFAQEMP 322

Query: 409 RGGTIWMFENLT-VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
             G +  F ++T  +  +E        ++   ++   E   +    G  + +N +     
Sbjct: 323 DRGFVMSFTDVTAERAAIEALSRANETLEARVMERTLE---LEDALGHAERANASRSRFV 379

Query: 468 KTEENRLSPGTHIRNI-AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL--LSDS 524
               + L        +  AT        +  +       + D     L   L++  L   
Sbjct: 380 AAASHDLLQPLSAAKLFIATIGDEAVAPESREALTKAQKALDSVEGILGALLDISKLESG 439

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
               SI P+   + M    +    + A R L 
Sbjct: 440 RAAVSIQPVRLDRLMAQLSDEFAPIAAARGLR 471


>gi|169335858|ref|ZP_02863051.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258596|gb|EDS72562.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM
           17244]
          Length = 968

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 102/529 (19%), Positives = 203/529 (38%), Gaps = 42/529 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQN--RYLQFHNRSFVELWEIDLAFLATNPSND 353
           S    + +Q      +  ++   I   +      +   N    +++ ID   + +    +
Sbjct: 165 SANEAIKNQAMLLNRLYQSVPSGILQLECEYPHNIIIANHKIGQIYGIDEKDIKSGNYYN 224

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
            L + +  +    E    K         Y+      +         L V+          
Sbjct: 225 LLYKKIIES----EDNISKVLHNGGVIDYEREIIKYNKEKAWISVHLDVLNDVGGNDVIQ 280

Query: 414 WMFENLTVQ----VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            +  ++T Q    ++ E +      +    I   +E +              +F  +   
Sbjct: 281 CVINDITKQKHALIEKENEQKLENSLLRSAIFSSNEAILNLNLTADTYSIITSFEEVESD 340

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-----IITSFDDERKSLQGTL-ELLSD 523
             N    G +   I  +C    +     +         +I  F   +K +   L EL  D
Sbjct: 341 YRNIPRSGRYDDLIDKSCDLMVHPDYKEEYRIKFDRQNVIKQFKSGKKEIYMELMELGED 400

Query: 524 SVLEYSIIPLPNAQTMLT------------FVNVTDSVRAERALTEKNEALRKADEIKNS 571
               +       A+ +                  ++ +R+E+ L +   A R A+E K+ 
Sbjct: 401 GEYHWKSYTFTRAENIYNEDIIGISIVKSLDKQRSERIRSEQLLKDALNAARTANEAKSD 460

Query: 572 FVQHVSYELRSPLTNIIGFTDL--LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           F+  +S+++R+PL  IIG + +  LK  K  S+          I +SS  LL+L+NDILD
Sbjct: 461 FLSRMSHDIRTPLNAIIGMSTIGKLKIEKPNSV----LDCFSKIDSSSKYLLSLINDILD 516

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
           ++ +++G + LN      +++++E+ + I  +  E  I  KV SD  +   ++ADR +L 
Sbjct: 517 MSKIESGKVTLNDERFDFSEMIHEINEIIYDQAVEKGIEYKVYSDINMDKYYIADRLKLN 576

Query: 689 QIFSKILSNAMDFSSKGSTVILK---AARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFV 743
           QIF  +LSN++ + SKG  +        R+ G     F V+++G  + +     +F  F 
Sbjct: 577 QIFMNLLSNSLKYFSKGDFIHFSFKEVKRERGVSLIEFIVEDSGCGMSKGFLDKLFLPFE 636

Query: 744 S--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                      G GLGL+IV++ +++  G++ + S     +     +P 
Sbjct: 637 QENAGVARNNVGTGLGLTIVKNIVDIMEGNIEVISEKGRGSKFIVTLPL 685


>gi|149922749|ref|ZP_01911174.1| PAS/PAC sensor signal transduction histidine kinase [Plesiocystis
           pacifica SIR-1]
 gi|149816369|gb|EDM75870.1| PAS/PAC sensor signal transduction histidine kinase [Plesiocystis
           pacifica SIR-1]
          Length = 615

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 158/391 (40%), Gaps = 33/391 (8%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK-VQGETIDHLSEGVAVFGPDGRIKLSNP 461
           + +S+  GG       ++ +++   K  T  + +    +  + E V     D R+   N 
Sbjct: 217 VTSSDEFGGLAGSLSRVSKELERTVKELTSERDLFEAVLQSMEEAVLAVDADRRVVAVNR 276

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           + R L          G  +  +               L  A+ T+   E +S+   LE  
Sbjct: 277 SARDLLSITGKV--QGRLLLEVVRI----------PQLSDAVDTALRGESRSIDVNLETR 324

Query: 522 SD-SVLEYSIIPLPNA-QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           S    L     P       +L   +VT+  R E               ++  FV +VS+E
Sbjct: 325 SGLHHLLVRATPRGEGSGAVLVIHDVTEVRRLE--------------TVRRDFVANVSHE 370

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+P++ I   T+ L    L    ++  ++++ +  ++  L  L++D+LD++ ++AG   
Sbjct: 371 LRTPVSIIQANTETLLAGALDE-PAQARRFLDAVRRNAERLGQLISDLLDISRIEAGKYA 429

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           +    + +  +   V +++A       + ++V  + +L    AD   L Q+   ++ NA+
Sbjct: 430 IEMRPLSVASVARSVNKAVAEACRRRGVVLEVDIEPEL-QVRADAGALEQVLINLVENAV 488

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLG 757
            +  +G  V L A  D       V++ G  I  D  K VF RF            G GLG
Sbjct: 489 KYGPEGGLVELAAREDGAAVRIEVRDEGPGIAPDHRKRVFERFYRVDPGRSRHMGGTGLG 548

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+IV++  ++ GG V ++  +   +     +
Sbjct: 549 LAIVKNLTDVMGGDVGVTPREPTGSIFWLSL 579


>gi|296880155|ref|ZP_06904122.1| probable two component sensor histidine kinase [Clostridium
           difficile NAP07]
 gi|296428880|gb|EFH14760.1| probable two component sensor histidine kinase [Clostridium
           difficile NAP07]
          Length = 912

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 112/636 (17%), Positives = 245/636 (38%), Gaps = 61/636 (9%)

Query: 193 SVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
            + +   D++   VW   D   +I + N  +K     +   + K +   ++   E++ ++
Sbjct: 275 ELLRQALDTIPN-VWIVTDYDFNISYTNNKFKDEFSKDMDNYYKILTFIKE--DEKVAEK 331

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE- 310
           +           + V    +G      +    +         D++ EI +++++ H  + 
Sbjct: 332 LKKFDNDISIIDKLVEL--NGKIYLLSLSNNKDESNYLISLNDITNEIKIDEEIRHINKD 389

Query: 311 ---ILHNLTVAIAIFDQNR-----YLQFHNRSFVELWEIDLAFLATNP------------ 350
              I+ N+   I +           +   N+ + + ++   + L                
Sbjct: 390 YENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCTSSDLVDMTLEQYFETFNIDF 449

Query: 351 -SNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             N E      +  K  E +++  T    +  V   SE  +    +  G        S+ 
Sbjct: 450 FDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEEVRVGDYW-----SDN 504

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLW 467
           +   +  F ++T ++++    N    +  + +D + E + +      R+  +N AFR L+
Sbjct: 505 KLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLSTSRVLYTNRAFRELF 564

Query: 468 KTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAI----ITSFDDERKSLQGTLELLS 522
               + L   T   RNI     +Y N  +  +   +I      +   E K +  TL    
Sbjct: 565 GISSDVLGVTTQKYRNIL--VKKYINNLNIGEREKSIHIVNENNHIKEVKMISRTLYFGQ 622

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                  I  L             +S R ++AL ++     + D++K  F  ++S+EL++
Sbjct: 623 KRSRVRIIKDLS---------VQRESERLKKALIKQR----QYDQMKMEFYANISHELKT 669

Query: 583 PLTNIIGFTDLLKT----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           PL NI     L++      K+        ++++    +   LL L+++I++++ V + I 
Sbjct: 670 PLNNIYSSVQLVENLYKKGKIIDFQDILKEHIKITKQNMFRLLRLIDNIINISQVKSDIY 729

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           K+      + D+   +  SI++      I +   +D +      D + + +I   ILSN+
Sbjct: 730 KIKAVNFDIIDITERIVTSISSYAKSKGIDLIFDTDEETVMVGLDPESIERIILNILSNS 789

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
           + F+ +G  +++   + +      +K+ G  I ++    +FNRF    + G     G G+
Sbjct: 790 IKFTLEGGEILVGIYKKDETVEIIIKDTGVGIEKEKLNDIFNRFKQIENSGISNEFGSGI 849

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL + +S I +  G + I S     T +    P KE
Sbjct: 850 GLCLTKSLIEIQNGKIYIDSKVGEGTNVKIIFPIKE 885



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 103/296 (34%), Gaps = 35/296 (11%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           ++ +     + L  +     + D +  + + N  F + +  D+       +  ++L F++
Sbjct: 270 IDQRKELLRQALDTIPNVWIVTDYDFNISYTNNKFKDEFSKDMD------NYYKILTFIK 323

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM-FENL 419
              K+ E+L            + +  +  D     NG+   + +++N       +   ++
Sbjct: 324 EDEKVAEKLK----------KFDNDISIIDKLVELNGKIYLLSLSNNKDESNYLISLNDI 373

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-----RIKLSNPAFRSLWKTE---- 470
           T ++ ++ +   + K     I ++   + V   +G     ++   N  +   +K      
Sbjct: 374 TNEIKIDEEIRHINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCTSSDL 433

Query: 471 -ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VL 526
            +  L       NI    +R +   +      A I S++D    +   +   S+    V 
Sbjct: 434 VDMTLEQYFETFNIDFFDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVE 493

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS-----FVQHVS 577
           E  +    +   +   +   D  +    L   NE     +++ +      F++ +S
Sbjct: 494 EVRVGDYWSDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLS 549


>gi|229172696|ref|ZP_04300253.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3]
 gi|228610736|gb|EEK68001.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3]
          Length = 438

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 120/244 (49%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   +  + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 200 ELGELAHSLNHMSNKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 258

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 259 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQ 318

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR RL Q+F  I+ NA+ +S K   V ++A ++ G  +  VK+ 
Sbjct: 319 MQFIKTIER--IELMGDRNRLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDE 376

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG +S  S +   TTI  
Sbjct: 377 GIGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTLSFISKEGIGTTILI 434

Query: 787 RIPS 790
           ++P 
Sbjct: 435 KLPL 438


>gi|24379906|ref|NP_721861.1| putative histidine kinase CovS; VicK-like protein [Streptococcus
           mutans UA159]
 gi|24377885|gb|AAN59167.1|AE014984_2 putative histidine kinase CovS; VicK-like protein [Streptococcus
           mutans UA159]
          Length = 450

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 135/383 (35%), Gaps = 32/383 (8%)

Query: 417 ENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR-SLWKTEENRL 474
            +L+    L               + ++++GV      G+I + N   +  L  T E  L
Sbjct: 76  NDLSEVFRLTHENLAQEKNRLTSILSYMTDGVLATDRSGKITVINDMAQKQLNVTREQAL 135

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               +I +I    S  YN     DL           R      + L     L        
Sbjct: 136 EC--NILDILDDDSYTYN-----DLITKTPEIVLTRRDEYDEFITLRIRFALNRRESGFI 188

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +                  A+        K +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 189 SGLI---------------AVLHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEAL 233

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    S    +++     +  ++ ++ D+L L+ +D     L+         +N +
Sbjct: 234 DDGAL--TESVAPSFIKVSLDETNRMMRMITDLLSLSRIDNQTSHLDVELTNFTAFMNYI 291

Query: 655 KQSI----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
                   + +       I      K      D  ++ Q+   IL+NA+ +S  G  V +
Sbjct: 292 LDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKVTI 351

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
                +   I S+ + G  IP+     +F+RF          + G GLGL+I +  +  H
Sbjct: 352 TMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQH 411

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G +  +S +   +T    +P +
Sbjct: 412 KGFIWANSEEGEGSTFTIVLPYE 434


>gi|124262616|ref|YP_001023086.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1]
 gi|124261862|gb|ABM96851.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1]
          Length = 527

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 16/236 (6%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+  +S+E+R+PL  ++G  +LL+ + L     +++Q V  ++ SS  L+ L+NDI
Sbjct: 1   MKSRFLATMSHEIRTPLNGVVGAAELLQKNGLS--EREKAQMVSLLTQSSRALMALINDI 58

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           LD + +D G + +    I L  L+ E  +  A +    +I +    +  +  +   D  R
Sbjct: 59  LDWSKLDVGKVMIERHPINLRALVFESNELFAAQAANKDIELTSSCNPDVPRTLHGDPTR 118

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKA----------ARDNGDFIFSVKNNGSSIPEDMC 735
           + QI + ++SNA+ F+ +G   + L              D       V + G  I  +  
Sbjct: 119 IRQIVNNLVSNAVKFTERGGVHIHLSIDGIDPSERHQEGDPRTVRIEVSDTGIGISPEKL 178

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F  F        R   G GLGL I +   NL GG + +SS+    +     +P
Sbjct: 179 GKLFKAFSQGDVSVTRNFGGTGLGLVISQELANLMGGRIEVSSTPGVGSVFTALLP 234


>gi|302334933|ref|YP_003800140.1| integral membrane sensor signal transduction histidine kinase
           [Olsenella uli DSM 7084]
 gi|301318773|gb|ADK67260.1| integral membrane sensor signal transduction histidine kinase
           [Olsenella uli DSM 7084]
          Length = 657

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 12/283 (4%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-------ALTEKNEALRKADEIKNSF 572
           L S S +   I+ L +   ++       + R E         L    + LR A+  K+ F
Sbjct: 360 LRSRSSVPSEIVSLADDMYVMARKLTDKNQRLEEKVSARTAQLANTVDELRAANRHKSQF 419

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+ELR+PL +IIGF  LL+ +  G LN+ Q++Y E I  S   LL+L+NDIL L  
Sbjct: 420 LANISHELRTPLNSIIGFASLLQENVAGDLNATQTRYAEIIIESGGHLLDLINDILQLVK 479

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQRLLQI 690
           +D  + KL  S + + + +      I     E    ++VI   +L  + A  D Q++ QI
Sbjct: 480 LDTSVDKLKLSRVSVIEAIRNPVDLIRPLADERGQGLEVIVADELDGYTAYWDEQKVHQI 539

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFS-VKNNGSSIPEDMCKSVFNRFVSNAHRG 749
              +LSNA+ FS  G  + +KA+    +F+F  V +NG  I  DM + VF  F    +  
Sbjct: 540 LLNLLSNAVKFSPDGGRIRVKASLVEENFVFIHVIDNGIGISNDMKERVFLAFEQADNSY 599

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            R  +G GLGL+I +  + +H G + +  +  G       +P 
Sbjct: 600 TRIYKGAGLGLAITKDLVEMHSGRIWLEDAPGGGLDACVVLPL 642


>gi|238761632|ref|ZP_04622607.1| Signal transduction histidine-protein kinase barA [Yersinia
           kristensenii ATCC 33638]
 gi|238700146|gb|EEP92888.1| Signal transduction histidine-protein kinase barA [Yersinia
           kristensenii ATCC 33638]
          Length = 891

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 248 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 304

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 305 QRSANNLLCIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHV 364

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+  IL A +         +  + + G 
Sbjct: 365 NNDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVATQAKTPQQVTLVVEIHDTGI 424

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S  +  +T   
Sbjct: 425 GISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRF 484

Query: 787 RI 788
            +
Sbjct: 485 HL 486


>gi|225388288|ref|ZP_03758012.1| hypothetical protein CLOSTASPAR_02023 [Clostridium asparagiforme
           DSM 15981]
 gi|225045635|gb|EEG55881.1| hypothetical protein CLOSTASPAR_02023 [Clostridium asparagiforme
           DSM 15981]
          Length = 1111

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 93/527 (17%), Positives = 188/527 (35%), Gaps = 45/527 (8%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +  Q  +   + + +   IA+    R   L   NR    L        A  P     +  
Sbjct: 313 LRRQADYIGHLYNAVPEGIALLTVERPYRLLELNREGSRLLNAP----ANGPGGGSQVRS 368

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLPNGQTLH---VIVTSNPRGG-- 411
           L     L    ++K   +       S      +      +G       +      + G  
Sbjct: 369 LEEILYLE---DYKRTADLFREAISSGRKIPFESRMVRADGSLFWASGIAERVLDQDGKE 425

Query: 412 -TIWMFENLTVQVDLETKYNTLVKVQGETI-----DHLSEGVAVFGPDGRI--------K 457
             I  F ++T +   E +       +   +     +     +++      +         
Sbjct: 426 ILIATFHDITAEKLAEEEAEREKLQERRMLVGAISNVFPVIISLNLSRDTLKFIYLQRGL 485

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-QG 516
           + N      +        P  H  ++     R+  E+    L       F D R+ L  G
Sbjct: 486 MVNIRKDGAYSQLYESFIPTVHPDSLEEFKRRFSLENLRRTLGKERPEVFMDTRQMLTDG 545

Query: 517 TLELLSDSVLE----YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                S  ++     YS   L    +        +  +  +AL    E  R A   K+ F
Sbjct: 546 QYHWTSIQIIYVDNPYSEDDLAILLSRRIDEQRYEEEQKRQALQSALEGARAASMAKSQF 605

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+++R+P+  I+G   +  T     +  + ++ ++ IS SS  LL+L+NDILD++ 
Sbjct: 606 LSNMSHDIRTPMNAIMGMAAIASTRLDDRV--RVAECLKKISLSSQHLLSLINDILDMSK 663

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIF 691
           +++G + L        +L+  V + +  +     + + V          V D  R+ Q++
Sbjct: 664 IESGKLSLREEPFNFAELVANVTELMVPQAIAAQLEMNVSLPVLSQEEVVGDALRVRQVY 723

Query: 692 SKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             ILSNA+ ++  G  V ++   + G      +F F   + G  +  D  + +F  F   
Sbjct: 724 LNILSNAVKYTEAGGRVQIEVWEEPGSRGGRRNFFFRCTDTGIGMSGDFLEHLFQPFERA 783

Query: 746 AHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           A    +  G GLG++I  + ++L  G + + S     +     +P +
Sbjct: 784 ADSADKASGTGLGMAITRNIVDLMSGDIQVESRPGEGSRFTVMLPLQ 830


>gi|17228224|ref|NP_484772.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130074|dbj|BAB72686.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1645

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 119/686 (17%), Positives = 247/686 (36%), Gaps = 89/686 (12%)

Query: 141  FDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
            F +         ++  G++       + L + G   ++ E  +  K+L    +     F 
Sbjct: 764  FRMRCAAGGWKWVQSRGQIVERNEQGQPLRMTGTTKDITERKILEKELELREARLNAFFS 823

Query: 201  SLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
                 +   D     +  N            E  G   ++       L    + ++++ +
Sbjct: 824  GAPVGMSILDNQLRFVQINELIAHIHGKPAQEHIGKTLEEIAPRIAPLV-TPLCQKVLLT 882

Query: 256  SALEKNFCETVSTLEHGNN-KSYKIVRVLNSF---GEAGIAIDVSKEITVNDQLTHTYEI 311
                 N   ++  +   ++ + + +            +G+   + +   V D+L      
Sbjct: 883  GQPILNVELSLPAVNQADSLRHFLVSYFPIPGEGNQLSGVGKVIVEISDVYDELRLRKRA 942

Query: 312  LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
               L  +I    + R +    +   +  ++D  F AT     ++L             N 
Sbjct: 943  EEALKESIE---RERAIAQVIQRMRQTLDLDTIFAATTEELRQVL-------------NC 986

Query: 372  KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
                   F    S E   ++W                  G I + E       L      
Sbjct: 987  DRAVVYRFDSQGSGEFVAESW----------------GKGWISLIEKQKNVPHLTENTAK 1030

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
                  + +++  +      PD         +++        +     ++  A       
Sbjct: 1031 DQSCLAKLLEYTPQA----TPDKNFLCVADIYQA--GFGSCYIEFLERLQAKAYIIVPIL 1084

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            +    W L A    S   + K+ +  + +   + LE           +     +T + R 
Sbjct: 1085 SGDQVWGLLATYQNSGPRQWKTGEINIVIQIGNQLEV---------ALQQAQLLTQTQRQ 1135

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
             +AL     A   A+  K+ F+ ++S+ELR+PL  I+GFT ++   K  S +++Q+  + 
Sbjct: 1136 SQALEAAAIAADAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDKTLSKDNQQN--LT 1193

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I+ +   LL+L+ND+L+++ ++AG   LN ++  L  LL+ +++ +  +     + +K 
Sbjct: 1194 IINRAGEHLLDLINDVLEMSKIEAGRTTLNINSFDLIHLLDNLQEMMQGRATAKGLHLKF 1253

Query: 672  ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF----------- 719
                 +     AD  +L Q+   IL NA+ F+  GS +IL+     GD+           
Sbjct: 1254 EYAPNIAQHIQADESKLRQVLLNILGNAIKFTETGS-IILRVKMGTGDWGLGTEEDTKTH 1312

Query: 720  ----------------IFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVE 762
                            IF +++ G  I +D    +F  F    A R  ++G GLGL+I  
Sbjct: 1313 LSIPNTQSPITNPQSLIFEIQDTGIGICDDEVCVLFEAFGQTEAGRKSQQGTGLGLAISR 1372

Query: 763  SFINLHGGHVSISSSDEGVTTINCRI 788
             ++ L GG +S+SS+    +T + +I
Sbjct: 1373 KYVQLMGGDISVSSAVGVGSTFSFQI 1398


>gi|330973454|gb|EGH73520.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 645

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+ +     +Q
Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHM---THEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      + N
Sbjct: 302 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRN 361

Query: 667 IRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           + +++     L +   + D  R+ QI   ++ NA+ F+ +G  V + A     D+    F
Sbjct: 362 LLLELHIQPGLETMNVIGDPTRIRQILVNLIGNALKFTEQG-KVCVDARWAMLDDERLHF 420

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V+++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S 
Sbjct: 421 TCAVQDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLYAESK 480

Query: 778 DEGVTTINCRIPS 790
           +   +    +IP 
Sbjct: 481 EGSGSLFTLQIPL 493


>gi|153806756|ref|ZP_01959424.1| hypothetical protein BACCAC_01028 [Bacteroides caccae ATCC 43185]
 gi|149131433|gb|EDM22639.1| hypothetical protein BACCAC_01028 [Bacteroides caccae ATCC 43185]
          Length = 633

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 104/505 (20%), Positives = 202/505 (40%), Gaps = 28/505 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID--LAFLATNPSNDELL 356
             +       + I  NL V I ++++   L   N   ++L+ +D     L  N   + + 
Sbjct: 135 QALQRSERLLHNIYKNLPVGIELYNKEGVLVDLNDKELDLFHVDSKEELLGINIFENPVF 194

Query: 357 -EFLRSANKLPEQLNWKTWKE-NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            E ++   +  E  ++    + +    Y S+   + T  L    T       NP    + 
Sbjct: 195 PEEMKERLRNNEDADFTFRYDFSKLGEYYSNNKAEGTIDLVTKVTTLYDENHNPVNY-LL 253

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +  + T       K     +      D+   G A F       LS          +    
Sbjct: 254 INADKTETTVAYNKIQEFEEFFELIGDYAKVGYAHFN-----ILSKQGHAQKSWYKNIGE 308

Query: 475 SPGTHIRNIAATCSRYYNESDGW--DLFAAIITSFDDE--------RKSLQGTLELLSDS 524
             GT +  I  T   ++ +        F  +     D+        R++ + T   ++  
Sbjct: 309 ESGTPLSEIIGTYKSFHPDDRDLILQFFEEVQKGNADKLSHKIRVFRENGECTWTHVNLF 368

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V +Y+       + +    ++TD  + E  L  + +    +D +K++F+ ++S+E+R+PL
Sbjct: 369 VRKYAPQD-KVIELISINYDITDLKQIEEMLVNERDRAEASDRLKSAFLANMSHEIRTPL 427

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ LL +++        +  + + +     L+N   DI+DL+ ++AG ++L+ + 
Sbjct: 428 NAIVGFSSLLASAENVVEKELYNSLISHNNELLLNLIN---DIIDLSKIEAGYLELHQNW 484

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L +LL+E     A  +    + +             D+ R+ QI +  LSNA+  + +
Sbjct: 485 FNLTELLDECVAEYARLLPS-GVELLTSYPEHDALVELDKLRIKQILNNFLSNALKNTIR 543

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G  V +    D       VK+ G  IP++M + +F RF       Q  GVGLGLSI +S 
Sbjct: 544 G-YVEVFYEIDKHCVRIGVKDTGCGIPQNMLEKIFERFEKVDSFAQ--GVGLGLSICKSI 600

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           ++   G + + S     TT    +P
Sbjct: 601 VDKMNGRIQVYSQLGLGTTFIAELP 625


>gi|28867566|ref|NP_790185.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28850801|gb|AAO53880.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 595

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 147/357 (41%), Gaps = 21/357 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +    G ++  NP  +     +E+RL           +     +
Sbjct: 257 QQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQ---------SLGEALS 307

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
             +  +    ++     ER      +++  +  +L YS+ P+ + +  +    +      
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIDIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+            + +++ FV   S+ELR+P+T +     LL+     +  S+++  + 
Sbjct: 368 EQR---------AFERVRSEFVLRASHELRTPVTGMHMAFGLLQERLHFAPESREADLLN 418

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            ++     L+ L+ND+L+ +    G+ KL  +   +  LL E +     +  E  I + +
Sbjct: 419 TVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARYEGQAQEQEIVLML 478

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                +    AD+ +L ++   +L NA+  +     + L+A R     I SV++NG  I 
Sbjct: 479 DIQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQARRHGERAIISVEDNGEGIA 538

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 +F  FV      ++ G GLGL++ +  + LHGG + + S     T     +
Sbjct: 539 YGQQGRIFEPFVQVG--RKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMAL 593


>gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 908

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 162/343 (47%), Gaps = 27/343 (7%)

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           V  P+  + +++P    L +   N +  GT         S+   + +   L   I+T   
Sbjct: 451 VITPEDYLHVTHPEDIELVRNHINYMIGGTTKDLNFKFRSKTKWDKEWQTL---IVTGIP 507

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
            ER            +V+ Y+ I + N +            +  + L E  +    +D +
Sbjct: 508 VERDK--------KGNVIRYTGIKVNNTK----------WEKMAQQLKELKDKAELSDRL 549

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+PL  I+GF++L+         +++ +Y+  I +++ +LL L+NDIL
Sbjct: 550 KSAFLANMSHEIRTPLNAIVGFSELM---VYSEDPAEKEEYMSIIQSNNELLLRLINDIL 606

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           DL+ +++GI++    T  L  + NE+   I  K+   ++  ++ + G       DR RL 
Sbjct: 607 DLSKIESGILERKRETFNLAKVCNELYTMIQPKITNPDVEFQMDNSGPDCWIFLDRSRLK 666

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q++   L+NA+  +  G  + +  + +       V+++G  IPE++ + VF RF      
Sbjct: 667 QVWMNYLTNAVKCTKSG-YIKMGYSIEREGIRIYVEDSGVGIPEELQERVFGRFQKLNEF 725

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            Q  G GLGL+I  + I   GG V  +S+    +T    IP +
Sbjct: 726 AQ--GTGLGLAISRAIIEGAGGEVGFTSTPGIGSTFWAWIPCE 766



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-------PSND 353
           + DQL     I   L ++I I+D N  L+  N   ++++ +       N       P  D
Sbjct: 24  IKDQLLFAESIYACLPMSIEIYDTNGILRSINEHALQMYGVTDKTTVVNIVNLFNSPYVD 83

Query: 354 ELL--EFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           E L     R  + + E + ++   K+N +   ++  T          + + +        
Sbjct: 84  ETLKNRIQRGEDIVLEFEYDFDRIKDNAYFSTQNKNTIIYE-----AKVVPLRSKEGEII 138

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           G I +  ++T   + E + +   K     ++  S    V+ 
Sbjct: 139 GHILLSNDVTAIKEAEFRTDESKKNLEMAMEAASMSSWVYD 179


>gi|262163963|ref|ZP_06031702.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus VM223]
 gi|262027491|gb|EEY46157.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus VM223]
          Length = 1177

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 14/293 (4%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           A I T   DE   L  + E +  S+ E  S+I   N +     +           + ++N
Sbjct: 449 AMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNKELENNLLI----------IRKQN 498

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G L +     ++ I +S   
Sbjct: 499 DELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIIISSGQR 558

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV+D+LD   +  G + +    + L+     V +     + +  +RI      +   
Sbjct: 559 LATLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSNHLLGKKTLRIINQVSEQPVW 618

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F
Sbjct: 619 VSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQLEQIF 677

Query: 740 NRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 678 EPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMVGTTFSFTLPL 730


>gi|254507093|ref|ZP_05119231.1| sensor histidine kinase/response regulator fusion protein [Vibrio
           parahaemolyticus 16]
 gi|219550088|gb|EED27075.1| sensor histidine kinase/response regulator fusion protein [Vibrio
           parahaemolyticus 16]
          Length = 566

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 7/238 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +      ++++    FV  +++ELR+PL  ++G  +LL  ++   LN +QS  +  +  
Sbjct: 192 QKARARAEESEKATKEFVAMINHELRTPLNGLLGSAELLAETQ---LNDEQSTLLNNLVY 248

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISD 674
           S  +L  ++NDILD + + AG+M+L  S      +   +     +K  E  +  ++  S 
Sbjct: 249 SGDLLRLIINDILDFSKISAGMMELIPSRFEWASVKQMLNGIFQSKAVEKGVDFRIKEST 308

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                 + D +R+ Q+   ++ NA+ F+ +GS V +     +     +V++ G  I ++ 
Sbjct: 309 PIPPILIGDFERICQVMVNLVGNAVKFTRQGS-VSVTTQWKHDQLTITVEDTGIGIEQED 367

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             ++F+ FV       R   G GLGL+I ++ + L  GH+ + S     +T    IP 
Sbjct: 368 LSTLFDPFVQVDRTATRHFEGTGLGLAICKNLVELMRGHIHVHSVKGSGSTFTVTIPL 425


>gi|148654653|ref|YP_001274858.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148566763|gb|ABQ88908.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 1017

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 163/386 (42%), Gaps = 37/386 (9%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
              +DL     T        +    EG+ +   DG + ++N A   L   + + +    H 
Sbjct: 649  ESIDLFMAVRTARDQMASILASTREGILLIDTDGTVAVANAALSDLTTLDASII----HG 704

Query: 481  RNIAATCSRYYNES-DGWDLFAAIITSFDD-----------ERKSLQGTLELLSDSVLEY 528
              I A  SR++  +    +  AA+    DD           E     G L  L  SVL  
Sbjct: 705  LPIDAFLSRWFEAAAYETEECAALQRGIDDVLTGTAQFVAGELSGRSGQLRHLEWSVLRA 764

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                  +   +L   ++T +  AER              +++     + ++LRSPL+ ++
Sbjct: 765  QSSGDSHGGVLLVLRDITATKEAER--------------MRHDLTHMIVHDLRSPLSGVM 810

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
               +L+     G LN +Q   ++  S S+  +L+++N +LD++ ++AG M +      + 
Sbjct: 811  ASIELMMRGVPGKLNDQQRHVLQIASTSAANMLDMINTLLDISRLEAGRMPIERCIGNIR 870

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            D++++  Q +A+   +  I I+   +  +    AD   + +I   ++SNA+ FS +G  V
Sbjct: 871  DIIHDSVQRLASLALDRAITIRTEVEEDVPDIYADLGLISRIIQNLVSNAIKFSHRGGLV 930

Query: 709  ILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVES 763
             ++AA +  D      I SV + G  I     + +F +F     R  R G GLGL+    
Sbjct: 931  TVRAAVETADDGQPKVIVSVSDQGVGIAPGDRERIFAKFSQVGER--RGGTGLGLAFCRQ 988

Query: 764  FINLHGGHVSISSSDEGVTTINCRIP 789
             I  HG  + ++S     +T    IP
Sbjct: 989  AIEAHGERIWVNSELGRGSTFFFTIP 1014



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 21/183 (11%)

Query: 281 RVLNSFGEAGIAID-VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELW 339
            V+    +A +AI+ +   + V         IL +    I + D +  +   N +  +L 
Sbjct: 636 TVILFASQAAVAIESIDLFMAVRTARDQMASILASTREGILLIDTDGTVAVANAALSDLT 695

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY-------------KSSE 386
            +D + +   P  D  L     A    E       +  I  V              +S +
Sbjct: 696 TLDASIIHGLP-IDAFLSRWFEAAAY-ETEECAALQRGIDDVLTGTAQFVAGELSGRSGQ 753

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
                W       L    + +  GG + +  ++T   + E   + L  +    +     G
Sbjct: 754 LRHLEWS-----VLRAQSSGDSHGGVLLVLRDITATKEAERMRHDLTHMIVHDLRSPLSG 808

Query: 447 VAV 449
           V  
Sbjct: 809 VMA 811


>gi|332308372|ref|YP_004436223.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175701|gb|AEE24955.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 661

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 9/274 (3%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L    ++Y I    ++      +    + R               +  K+ F+ H+S+EL
Sbjct: 100 LDAGAVDYIIKSELSSSRFARAIRYALARREIEKERVDRLKAEAENRSKDRFLAHLSHEL 159

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT+I+G+T+LL  SK+G   S QS+ +  +  +S  LL+L+N++LDL+ + A  ++L
Sbjct: 160 RTPLTSILGYTELLMDSKVGQ--SAQSE-LSIVLNNSKHLLSLLNNMLDLSKIAADKLEL 216

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAM 699
           N S + L+ ++ +V   +     +  + + V S   L      D  R  Q+   ++SNA+
Sbjct: 217 NLSEVNLDAMIADVYALMTIPATDKGLTLTVSSATPLPLKITTDATRFRQVLINLISNAI 276

Query: 700 DFSSKGST-VILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
            F+ KGS  V L + + N      F+V + G  IP++    +F  F   A      + G 
Sbjct: 277 KFTEKGSVDVSLWSEKRNKTDYLYFTVADTGIGIPKNQIGCIFKPFEQVADVVSRNQGGS 336

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL+I    ++  GG VS++S     +     I
Sbjct: 337 GLGLAICNELVSKMGGDVSLTSEFGKGSCFTAYI 370


>gi|83312977|ref|YP_423241.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947818|dbj|BAE52682.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1177

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 146/326 (44%), Gaps = 18/326 (5%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            I     R  +  +     A  + + ++E ++    L++ ++  L  S   L   Q  L 
Sbjct: 419 EILERNLRTLDLLEESQTQAEELKASEEELRAQGEALQVANEE-LRVSEEELKVQQEALQ 477

Query: 542 FVNVTDSVRAE------RALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNII 588
             N    +++E      +AL +      +           K+ F+ ++S+ELR+PL +++
Sbjct: 478 TANEELRLKSEALEERGKALEDARAEADRRALDVEQASRYKSEFLANMSHELRTPLNSVL 537

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
                L  +  G+++  Q +    I  S T LL L+ND+LDL+ V+AG M L+  TI + 
Sbjct: 538 ILARDLADNDTGNMSDDQVESARVIHESGTHLLALINDVLDLSKVEAGKMTLDPVTIAIA 597

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS- 706
           DL+  ++   A    +  +  +V  D  L  S  ADR ++ QI + ++SNA+ F+S+G  
Sbjct: 598 DLVQVIRGRFAPVATDKGLGFQVEVDPDLPRSLKADRGKIEQIANNLVSNAIKFTSEGGV 657

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
           TV L    D      SV + G  I     + VF  F         Q  G GLGL+I    
Sbjct: 658 TVRLSLTGDGHVLALSVADTGIGIAPQDRQRVFAAFEQADSGTSRQFGGTGLGLTISRKL 717

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
             L GG +++ ++ +  +     +P 
Sbjct: 718 ARLMGGDITLDANGDKGSVFTLLLPL 743


>gi|42522179|ref|NP_967559.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574710|emb|CAE78552.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 666

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 144/342 (42%), Gaps = 10/342 (2%)

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             + R+ +   +F          L     I  I A       E  G  L  +   +    
Sbjct: 183 DLNDRLTVLEASFSYTLGEGSRWLENMLMITLIFAV---LIVEGTGLFLTISFSRNLSKG 239

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
              L      + +   +  +      +      ++        +   + +   +A ++K+
Sbjct: 240 LSELNSAAHEVGEGRFDVQVPVRSGDELGQLAESINLMAHHLSSSIGERQQAEQASQLKS 299

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+E+R+PL  IIGF+DLLK S L    S++ QYV  I  +   L  ++NDILDL
Sbjct: 300 LFLANMSHEIRTPLAAIIGFSDLLKESNLD--ESERLQYVNIIHRTGEHLTRIINDILDL 357

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + V+AG +++    + LN LL ++   +  ++ +  + ++    G +   +  D  RL Q
Sbjct: 358 SKVEAGHLEMQSHPVNLNSLLEDLHILMVARVGDKPVHVEFNRRGIVPDMIRTDPLRLRQ 417

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-- 747
           I + I+ NA+ F+ +G  V +       + +F+VK+ G  I      ++F  F    +  
Sbjct: 418 ILTNIIGNAIKFTDQG-YVRMTYEISGSNLLFTVKDTGVGISSAQRSNLFQAFSQIDNSV 476

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSIS-SSDEGVTTINCRI 788
             +  G GLGL +      + GG V +  S      T   +I
Sbjct: 477 SRKYEGTGLGLVLSRRLAQMMGGDVHLEDSEPGKGCTFIVKI 518


>gi|322508065|gb|ADX03519.1| Sensor protein [Acinetobacter baumannii 1656-2]
          Length = 912

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 129/245 (52%), Gaps = 8/245 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   A  +A++ K+ +V  +S+ELR+PL +I+G++ LL+  K   L+ +    +  
Sbjct: 426 KDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQ--KQEQLSEQGKMALGV 483

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS S   L +L++ +LDLA ++ G + LN   +   + + ++ Q    +  + N++    
Sbjct: 484 ISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFVYE 543

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               L  +V  D++RL Q+   +L NA+ F++ G T+ LK         F +++ G  I 
Sbjct: 544 IGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG-TITLKVEYRFQTAYFEIRDTGCGIA 602

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR-- 787
           E   + +FN F   ++  Q    G+GLGL IV+  ++L GG +S++S     +    +  
Sbjct: 603 EADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQLSVTSQLNQGSQFKIKFY 662

Query: 788 IPSKE 792
           +PSKE
Sbjct: 663 LPSKE 667


>gi|320324907|gb|EFW80979.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329273|gb|EFW85270.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 645

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 118/252 (46%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++    ++Q
Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TAEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 302 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRE 361

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFS 722
           + +++         +   D  R+ QI   ++ NA+ F+ +G   ++   A  DN    F+
Sbjct: 362 LLLELHIQPGLDTVTVTGDPTRIRQILVNLIGNALKFTEQGKVSVVAQWAMLDNDQLHFT 421

Query: 723 --VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V ++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S +
Sbjct: 422 CAVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQE 481

Query: 779 EGVTTINCRIPS 790
              +    +IP 
Sbjct: 482 GSGSVFTLQIPL 493


>gi|254562560|ref|YP_003069655.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           extorquens DM4]
 gi|254269838|emb|CAX25816.1| putative integral membrane sensor hybrid histidine kinase
           [Methylobacterium extorquens DM4]
          Length = 1059

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 114/237 (48%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 582 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 639

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     +R +    
Sbjct: 640 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLRFRFTRP 699

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+ +G  V L+        +F++++ G  IPE 
Sbjct: 700 EILPAVVATDEKRLRQILLNLLSNAIKFTPEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 758

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F   +        G GLGL+I      + GG +++ S     T    R+
Sbjct: 759 DLGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRL 815


>gi|229512884|ref|ZP_04402351.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TMA 21]
 gi|229350133|gb|EEO15086.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TMA 21]
          Length = 1129

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I 
Sbjct: 446 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 505

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 506 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVS 565

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP + 
Sbjct: 566 EQPVWVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQ 624

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 625 LEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPL 682


>gi|196229487|ref|ZP_03128352.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196226719|gb|EDY21224.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 602

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 149/360 (41%), Gaps = 22/360 (6%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              ++   T     + + V   DGR+  +NPA  +       +      ++       + 
Sbjct: 258 QARQMTEITFSAFPDPIIVVAADGRVNFANPAANTFLFKLGMKDGLPPGVQEEVNRIVKG 317

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
             +         I+   D++                E  ++P      ++   + T S+ 
Sbjct: 318 APDYLPTSFDRVIVFRIDEQ----------------EVFVLP-----RVIGMRDETGSIF 356

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
               + +    LR  DE+K + V  VS+EL++PLT++     LL   ++GSLN KQ++ +
Sbjct: 357 GAAVVLQDVTRLRLLDEVKTNLVSTVSHELKTPLTSVRMGLHLLLEERIGSLNPKQTELL 416

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                 S  LL ++ND+LDLA +++G   L    +   +L++  +  +   +     ++ 
Sbjct: 417 LAAREDSERLLRMINDLLDLAKLESGRTALPSLPMDPRELIDNAQDDLRALVESRGSKLV 476

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                 L     D +++  +FS  +SNA+  +  G  ++L+A   +G   FSV ++G  I
Sbjct: 477 TKVTPGLPRVSVDARQVAHVFSNFVSNAIKHTKPGEEIVLRAKNQDGRVRFSVVDHGPGI 536

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           P      +F+RF          G GLGL+I    +   GG + + S     +     +P+
Sbjct: 537 PIQFQGQIFDRFFRLPGSEST-GAGLGLAIAREIVLAQGGVIGVQSEPGKGSEFYFDLPA 595


>gi|229505755|ref|ZP_04395265.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae BX 330286]
 gi|229509211|ref|ZP_04398696.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae B33]
 gi|229519579|ref|ZP_04409022.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC9]
 gi|229520913|ref|ZP_04410335.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TM 11079-80]
 gi|229608866|ref|YP_002879514.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae MJ-1236]
 gi|255744160|ref|ZP_05418113.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholera CIRS 101]
 gi|262155734|ref|ZP_06028858.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae INDRE 91/1]
 gi|262169924|ref|ZP_06037614.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC27]
 gi|229342146|gb|EEO07142.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TM 11079-80]
 gi|229344268|gb|EEO09243.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC9]
 gi|229353783|gb|EEO18719.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae B33]
 gi|229357978|gb|EEO22895.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae BX 330286]
 gi|229371521|gb|ACQ61944.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae MJ-1236]
 gi|255738100|gb|EET93492.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholera CIRS 101]
 gi|262021658|gb|EEY40369.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC27]
 gi|262030445|gb|EEY49085.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae INDRE 91/1]
          Length = 1129

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I 
Sbjct: 446 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 505

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 506 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVS 565

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP + 
Sbjct: 566 EQPVWVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQ 624

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 625 LEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPL 682


>gi|254442171|ref|ZP_05055647.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198256479|gb|EDY80787.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1467

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 120/656 (18%), Positives = 230/656 (35%), Gaps = 60/656 (9%)

Query: 179  AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG 238
             E  L  + L       ++L D+    +   D+    L  +  +  + +    +  K   
Sbjct: 680  IERALTEETLRESEERARLLLDNAPAAIAIFDRDMLYLSVSQRWMDDNKHTESLIGKHHY 739

Query: 239  ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN-KS--YKIVRVLNSFGEAGIAIDV 295
            E  +   +  K     S   E         ++     +   ++    LN  GE G  + +
Sbjct: 740  EVVQYMPDHWKAAHRRSLKGETVKANKDLFVDDNEQVRWIKWETRPWLNGDGEIGGIVLM 799

Query: 296  SKEITVNDQLTHTYE--------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
            ++EIT   +  +  E         L N    IA+FD        +R ++  +  D     
Sbjct: 800  TEEITDRVKAENLLEESERRAKLYLENAPAGIAVFDTKMRYLAASRRWLNDYGFDRDQDV 859

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY--KSSETHKDTWHLPNGQTLHVIVT 405
               S+  L        ++PE+     WK+        +     KD +   +G +  +   
Sbjct: 860  IGKSHYHLF------PEIPER-----WKDIHRRTLAGEIISDDKDEFIRADGTSQWIKWV 908

Query: 406  SNP-------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
              P        GG   M E++T  V  E            T ++ + G+A   P+G    
Sbjct: 909  CMPWTENDSQIGGLAIMAEDITDNVVAEKLQLESDLRFRSTFENAAVGIAHLSPEGNWLR 968

Query: 459  SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK------ 512
             N     +    +  L   T   +I        +      +    I+++  +++      
Sbjct: 969  VNQKICDMVDYSKEELLSMT-FGDITHPDDLEADWDLARKVLVGDISNYSIDKRYIRRDG 1027

Query: 513  -----SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                 SL  +L+L  D   +Y I    +        +    ++ E  L     A  KA+ 
Sbjct: 1028 STTWVSLTVSLQLSDDGSPDYFISITRDINAQKRAED--ALLQREEELISAKNAAEKANR 1085

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K+ F+  +S+ELR+PL  IIGF  LL      S  +   +   +  +S+  +L+LV+ +
Sbjct: 1086 AKDEFLSVMSHELRTPLNPIIGFAQLLAQR---SDEAFVKEASSFTLSSAQRMLSLVDSL 1142

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-----GKLGSFVA 682
            LD A +D         +  L +LL EVK    T  +  +++I+   D      +      
Sbjct: 1143 LDFANLDRTNANFPLESFSLEELLAEVKALRETIEYPCSLQIRNGCDPLSGIPENAKLCG 1202

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKS 737
              + + ++ S ++ NA  ++     +I  + +             V + G  +P +    
Sbjct: 1203 PLEPIRKVLSHLVGNAFKYAGDSGVIITLSYKQRTDPPEEYLQIEVSDLGPGVPPEYVPE 1262

Query: 738  VFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F  F        RR  G+GLGL+I E  +    G +    +          +P +
Sbjct: 1263 LFTPFNQADSSHTRRHGGLGLGLAISEKLVQQMNGSIKFRPNLPQGAVFTFSVPVR 1318


>gi|221065883|ref|ZP_03541988.1| histidine kinase [Comamonas testosteroni KF-1]
 gi|220710906|gb|EED66274.1| histidine kinase [Comamonas testosteroni KF-1]
          Length = 936

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 15/288 (5%)

Query: 514 LQGTLELLSDSVLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           + G LEL    V++ +  P+        + T  +VT   + E +L    +A   A++ K 
Sbjct: 402 IGGDLELEDGRVVQRTFTPMTYCGGPAVLCTINDVTKLKQTELSLLNAMQAAEAANQAKT 461

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+E+R+PL  I+G  +LL    L     +Q QY++ +  SST+LL+ +ND LDL
Sbjct: 462 LFLTTMSHEIRTPLYGILGTLELLS---LTGATEQQQQYLDTLRHSSTVLLSTLNDTLDL 518

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQ 689
           + ++AG M L    + L ++L+ V  +   +    N+R+   +       V  D  RL Q
Sbjct: 519 SRIEAGYMTLERRPLALLEVLDNVVSTFCVRAERKNLRLYCTASVNTPLLVLGDVTRLRQ 578

Query: 690 IFSKILSNAMDFSSKGSTV-ILK---AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           I   ++SNA+ F+  G  V  L+     + +    F V + G  I  +    +F+ +   
Sbjct: 579 ILDNLVSNAIKFTVSGHIVLRLRSTPVEKSHVQLEFEVADTGIGIAAEHLPQLFDPYFRT 638

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCRIP 789
                +  +G GLGLSI      + GG ++ +S     T       +P
Sbjct: 639 DSDIDQLIQGTGLGLSICSRLSQMMGGELAATSELGIGTRISFKVTLP 686


>gi|323484400|ref|ZP_08089766.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum
            WAL-14163]
 gi|323402178|gb|EGA94510.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum
            WAL-14163]
          Length = 1300

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 138/362 (38%), Gaps = 18/362 (4%)

Query: 443  LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
            +++    F   G  K  +    +   T       G   R      S Y    +       
Sbjct: 793  MADIRWDFNASGIYKQWHQQEDAEEDTAVYHFKAGAMERCSGHFVSGYVKFEENTVFTTE 852

Query: 503  IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                     K+    + +     L  ++  +  A+     V     ++    + E N   
Sbjct: 853  ERRILHIPLKAPGLCIPMYDGGKLMGAVSFIRKAEHSDWSVEECSELQEVVKIIETNINR 912

Query: 563  RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             + D     K  F+  +S+E+R+P+  IIG T +              + +  I  SS  
Sbjct: 913  ERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAMDRAKQ--EEGVKECLIKIDQSSQY 970

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LL+L+NDILD++ +++G MKL  +   +  +  E+   + ++M + NI        +   
Sbjct: 971  LLSLINDILDMSKIESGKMKLACNNGSIMKMAEEIDDLMESQMRQKNITCIRDIQVENPW 1030

Query: 680  FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----------RDNGDFIFSVKNNGS 728
              AD  RL Q+   + SNA+ F+++G  +                R+  +F F+V++NG 
Sbjct: 1031 VYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYEQKMERRQPEDRNEAEFFFAVEDNGI 1090

Query: 729  SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I     + +FN F            G GLGLSI    + + GG + + S +   +  + 
Sbjct: 1091 GISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSISSRLVRMMGGEIGLESREGEGSRFSF 1150

Query: 787  RI 788
             +
Sbjct: 1151 TL 1152


>gi|295108360|emb|CBL22313.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 714

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 131/294 (44%), Gaps = 25/294 (8%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------ 565
           L L +      S + L + +      N    ++  + +   N+ L+KA            
Sbjct: 261 LLLFAGLFYSISRLSLADQRAEYEKRNNELHLQTMKEMEVVNQKLKKAKNVATEALQTAE 320

Query: 566 --DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             ++ K  F+ ++S+++R+P+  IIG T L++        +K  +Y + I  SS  LL +
Sbjct: 321 NANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHDAGNK--AKVIEYADKIDISSQHLLGI 378

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVA 682
           +ND+LD++ ++AG     YS   + D + E+     T+++E      +I +  +      
Sbjct: 379 INDVLDMSKIEAGKTVFKYSDFSILDFIQELDTIFHTQIYEKQQTFTIIKENIQHEWVNG 438

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCK 736
           D+  L+QIFS +LSNA+ ++ +G  +                + F V +NG  +  D   
Sbjct: 439 DQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYAKYRFLVSDNGMGMSADFKD 498

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           ++F+ F         + +G GLG++I ++ +   GG + + S     +     +
Sbjct: 499 TIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDVESELGQGSCFEVLL 552


>gi|83815407|ref|YP_444969.1| two component system histidine kinase, putative [Salinibacter ruber
            DSM 13855]
 gi|83756801|gb|ABC44914.1| Two component system histidine kinase, putative [Salinibacter ruber
            DSM 13855]
          Length = 1143

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 106/673 (15%), Positives = 244/673 (36%), Gaps = 73/673 (10%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVF 233
             ++ +   K + L +  S  +V  D +       D+AG   + N ++      +T G + 
Sbjct: 482  RDMTDRRQKERALRHRSSAMEVASDGIA----ILDEAGTYQYVNQAHASIYGYDTPGALV 537

Query: 234  QKAIGESRKLFKEEIKKRMISSSALEKNFC--ETVSTLEHGNNKSYKIVRVLNSFGE-AG 290
             ++     +  +++  +    ++  E      E     E G++   ++   +   G    
Sbjct: 538  GRSWTACYEEAEQQRLEAEAMAALEETGDWRGEARGVREDGSSFPQELTLTVLEDGSIVC 597

Query: 291  IAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
            +  D++       +L     +  +IL      +A+F  +   +F N+  +     D    
Sbjct: 598  VVRDITARKEDERELRSTKQYYEQILEKAVKDLAVFKPDGRYEFVNKQSIA----DPELR 653

Query: 347  ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                 +   LE+ R     PE    +       +  + +   ++    P+G   H + T 
Sbjct: 654  EWIIGHTN-LEYCRKRGMDPELGRRRDQAIRTAAEEQRTTQFEERMDTPDG-VRHFLRTH 711

Query: 407  NP----RGGTIWMFE---NLTVQVDLETKYNT-------LVKVQGETI-----DHLSEGV 447
             P     G    +     ++T +   E   +        L +     +     D +S+ +
Sbjct: 712  KPITDVEGEVTHVAAFGIDITERKKREQALHERQDKIEALYRATRRVLTTEGPDEVSDRI 771

Query: 448  -----AVFG--------PDG------RIKLSNPAFRSLWKTE-------ENRLSPGTHIR 481
                 ++F          DG      R  ++ P+  S               L  G  + 
Sbjct: 772  HELLGSIFDYPLRNTGFVDGDTIHPARTTIAGPSVPSPEPQPKSGDSLSARALQTGDTV- 830

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---T 538
             I        N+ +   L +A      D    + G  E          ++ + ++     
Sbjct: 831  -IVEDVGGLDNDIEYGRLRSAAAVPIGDRGVVVVGKTEGGGFDPFNLRLLEILSSYAALV 889

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +           A+            A   K++ + ++S+E+R+PLT+IIGF D +    
Sbjct: 890  LGRLDREGALREAKEEAETARAEAEAASRAKSAMLANMSHEIRTPLTSIIGFADAIGEET 949

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              +  +    +   I  S   LLN ++ +L+L+ ++AG M+L  + + +      + + +
Sbjct: 950  QDAEGAALR-FANLIGKSGRRLLNTLDGVLNLSKLEAGQMQLESTAVDVAAQAETIAEEL 1008

Query: 659  ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              K     +R++V +        AD   +  +   ++SNA+ ++  G  V ++ AR+   
Sbjct: 1009 RPKAKGKGLRLRVDAGEAPVWAEADEGGVQIVLQNLVSNAIKYTDAGE-VRIRVAREGKA 1067

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
             +  V++ G  +   + +++F+ F   +     +  G GLGL++ +  ++  GG + + +
Sbjct: 1068 AVLDVEDTGIGMDPGVVETLFDPFRQESEGLAREYEGTGLGLTVTKKAVDQMGGSIDVDT 1127

Query: 777  SDEGVTTINCRIP 789
                 +    R+P
Sbjct: 1128 EKGEGSHFTVRLP 1140



 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 83/566 (14%), Positives = 185/566 (32%), Gaps = 55/566 (9%)

Query: 49  NSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDET--------PEIIGQLH 100
            S+ + + +          +  KY  LL       I+ D              E+IG   
Sbjct: 230 QSIGRVLEQDRREQKTDAIR-DKYELLLEAAPDPVILADIDTGRLVEVNQKAAELIGASE 288

Query: 101 QR-IDIPQTDTDLLSF-ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGR 158
           ++     QTD         + +       S A E +R       +  +T +   + +E  
Sbjct: 289 EKIAGRHQTDLHPDGEAGRYRRLFQACCRSGAEETVRHFEDGSSIYVQTDDGENVPVEIS 348

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
            +      R +++ GI+ ++ E   + + + + +   +   D +  L     + G  ++ 
Sbjct: 349 AATVEVGGRQIAV-GIFRDITEQEKRRRTIESSLRAIEEAADGIAVL-----EDGRYVYV 402

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKK---RMISSSALEKNFCETVS-TLEHGNN 274
           + ++      E           R    +E+ +    +      E  +   V+ +   G  
Sbjct: 403 DETHADMYGFESAEVLLGASWRRLYADDEVARLEEEVFPILEEEGQWQGEVTGSRPDGTT 462

Query: 275 KSYKIVRVLNSFGE-AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
               +   + S G       D++        L H    +   +  IAI D+    Q+ N+
Sbjct: 463 FPAALSLTVVSEGRLVCTVRDMTDRRQKERALRHRSSAMEVASDGIAILDEAGTYQYVNQ 522

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT----WKENIFSVYKSSETHK 389
           +   ++  D        S     E         E +        W+     V +   +  
Sbjct: 523 AHASIYGYDTPGALVGRSWTACYEEAEQQRLEAEAMAALEETGDWRGEARGVREDGSSFP 582

Query: 390 DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
               L          T    G  + +  ++T + + E +  +  +   + ++   + +AV
Sbjct: 583 QELTL----------TVLEDGSIVCVVRDITARKEDERELRSTKQYYEQILEKAVKDLAV 632

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
           F PDGR +  N    +  +  E  +       N+     R  +   G     AI T+ ++
Sbjct: 633 FKPDGRYEFVNKQSIADPELREWIIGH----TNLEYCRKRGMDPELGRRRDQAIRTAAEE 688

Query: 510 ERKSLQGTLELLSDSVLEY--SIIPLPNAQTMLTF-----VNVTDSVRAERALTEKNEAL 562
           +R +         D V  +  +  P+ + +  +T      +++T+  + E+AL E+ + +
Sbjct: 689 QRTTQFEERMDTPDGVRHFLRTHKPITDVEGEVTHVAAFGIDITERKKREQALHERQDKI 748

Query: 563 RKADEIKNSFVQH-----VS---YEL 580
                     +       VS   +EL
Sbjct: 749 EALYRATRRVLTTEGPDEVSDRIHEL 774


>gi|291523332|emb|CBK81625.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 672

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/463 (16%), Positives = 170/463 (36%), Gaps = 39/463 (8%)

Query: 357 EFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-HVIVTSNPRGGTIW 414
           E L   + L    +++    ++    +K        +   NG+ L   +  S P      
Sbjct: 77  ERLDDDHVLAHGTVDFTGLFKDGSICFKMETRFTIIYKWTNGKWLVQHLHQSTPD----- 131

Query: 415 MFENLTVQVDLET---KYNTLVKVQGETIDHLSEGVAVFGP----DGRIKLSNPAFRSLW 467
                  Q+D E         V+   + +  L               +I+L   + +   
Sbjct: 132 -----LEQMDGEEFPLTLGKQVQKTRQALHALGTAYYHISRLNLKTKKIELVKRSRKMGM 186

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             ++N          I +  +  + +          + +    ++S+    +    S   
Sbjct: 187 DIKDNTADWDPQFEVIESIIAEPFVQKYIDFFDIETMAARLHNKESMSSEFKKKDGSWFL 246

Query: 528 YSIIPLP---NAQTMLTFVNVTDSV-------RAERALTEKNEALRKADEIKNSFVQHVS 577
             ++P     N           D         + E  L E       A++ K+SF+ ++S
Sbjct: 247 SMVVPQSYDNNGNVTSVLFANRDVTDEKLRELKQEEELREAKLKAECANKAKSSFLYNMS 306

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +++R+P+  IIG+ +L   S+      K  +Y+E I      LL+++ ++LDLA ++   
Sbjct: 307 HDIRTPMNAIIGYAEL--ASRHLQETDKLGRYLEEIQICGKELLSMLGNVLDLARIENNK 364

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +++  +   +++           +    N  + +           D   L ++   I+SN
Sbjct: 365 VEIECTVSNVHECFENCVIMFQQQAESKNQTLSLTEQIMYPYVYMDAPHLSEVCLNIISN 424

Query: 698 AMDFSSKGSTV---ILKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRF--VSNAHRG 749
           A+ +++ G  +   +++ + +  D+   I S+ +NG  + E+  K +F  F    N    
Sbjct: 425 AIKYTNTGGRISCNVVQKSCEKEDWCNMIISITDNGIGMSEEFQKRIFETFERERNTTSS 484

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              G G+G+ I +  + L  G + + S     +T    IP ++
Sbjct: 485 HIEGSGIGMGITKKLVELMDGTIEVKSKQGKGSTFTVTIPCRK 527


>gi|153870385|ref|ZP_01999797.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152073147|gb|EDN70201.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 855

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 24/261 (9%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L++  ++K+ F+ + S+ELR+PL  IIG  + L     G L+ +    +  I 
Sbjct: 230 LKAKNAELKRLSQLKDEFLANTSHELRTPLQGIIGIAESLIDGASGQLSQQTCSELSIII 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   L NLVNDILD +      ++L    + + ++ + V +     +   ++++     
Sbjct: 290 ASGRRLSNLVNDILDFSKHKHKKIELQTKPVNMREITDIVLRFCQPLIGHKDLQLINNIP 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------------- 717
             L    AD  R+ QI   ++SNA+ F+ KG  V + A   +                  
Sbjct: 350 SDLPPANADENRVQQILHNLVSNAIKFTEKG-VVKISAQLSDNASLSIENIQPTEKNQST 408

Query: 718 ------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                     +V + G  IP D  + +F+ F          G GLGL+I +  + LHGG 
Sbjct: 409 KLPPDKCLTITVSDTGWGIPSDKTQKIFDFFEQLNSNSTINGTGLGLAITKQLVELHGGK 468

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S+++  +     +P  E
Sbjct: 469 IWLESTEDVGSRFLFTLPINE 489


>gi|304322209|ref|YP_003855852.1| two-component hybrid sensor and regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303301111|gb|ADM10710.1| two-component hybrid sensor and regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 782

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 131/313 (41%), Gaps = 22/313 (7%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT------DSVRAER- 553
           A  I S     +++  ++    D       +P  +   ++   N           R ER 
Sbjct: 184 ARAIYSPILRLRTIIQSIRETRDYSARVETVPDKDFGRLIDSFNAMLAEIENRDERLERV 243

Query: 554 --ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS---- 607
              L    +A   A++ K+ F+ ++S+ELR+PL  II + +++          + S    
Sbjct: 244 VGDLVMARDAADTANKSKSQFLANMSHELRTPLNAIINYAEIIIEDLEDVKGDEASTESL 303

Query: 608 ----QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
                 +  I ++   LL L+N ILDL+ ++AG M+++     L   L EV  ++     
Sbjct: 304 ETASSDLAKIKSAGIHLLTLINGILDLSKIEAGRMEIDAYAFDLKMTLREVADTVRPAAE 363

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFI 720
           +N  ++ +  D  +G+ V D  +L Q    +LSNA  F+  G+    +   + +D     
Sbjct: 364 QNGNQLVMRVDDHVGTIVTDGMKLKQCILNLLSNACKFTKDGTVSTEIRSISVKDVPSVE 423

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
             V + G  +     +S+F  FV       R   G GLGL+I +  + L GG + + S  
Sbjct: 424 IVVADTGIGMDAHQIESLFEAFVQADASTTRQYGGTGLGLAITKRMVELLGGTIRVESEL 483

Query: 779 EGVTTINCRIPSK 791
              +     +P +
Sbjct: 484 GTGSRFIIIVPCQ 496


>gi|229175384|ref|ZP_04302899.1| hypothetical protein bcere0006_44640 [Bacillus cereus MM3]
 gi|228608216|gb|EEK65523.1| hypothetical protein bcere0006_44640 [Bacillus cereus MM3]
          Length = 484

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 126/273 (46%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHPSPLYVTADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + D+   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKINVTVSIDDNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +  HGG + + S     T+I   +
Sbjct: 444 LGLAIAKQIVEEHGGEIWVESELGKGTSIFFSL 476


>gi|254446460|ref|ZP_05059936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260768|gb|EDY85076.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 998

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 127/281 (45%), Gaps = 11/281 (3%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           +G LEL  D      I    N +T      + +   +   L E  +A   A   KN F+ 
Sbjct: 435 RGRLELEGDDEF-GRIAYWFNKRTDQLSEALMELKLSNSELEEAKQAAESASRTKNVFLA 493

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+E+R+P+  IIG + LL       ++ +QS +V  I AS+  LL+L+NDILD   ++
Sbjct: 494 SMSHEIRTPMNAIIGLSSLLAEM---DMSKEQSNFVGTIRASAESLLSLINDILDYTKIE 550

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSK 693
           A  ++L      L +++ E+   ++ +  E  +      D    G  + D  R+ QI   
Sbjct: 551 ANELELEEVPFDLREIMEELTGMVSLQADEKGLGFSCYLDTATEGMVLGDPGRVRQILLN 610

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFI----FSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           + +NA+ F+  G   I  A  +  D      FSVK+ G  IPE    S+F+ F       
Sbjct: 611 LATNAIKFTISGRVDISGACIEETDTHYVLGFSVKDTGIGIPETAFGSLFDSFRQVDSTT 670

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            R   G GLGL+I +      GG + ++S     +  +  I
Sbjct: 671 TRKYGGTGLGLAICKRLCEKMGGEIQVTSKVGLGSEFSFII 711


>gi|157273376|gb|ABV27275.1| alkaline phosphatase synthesis sensor protein PhoR [Candidatus
           Chloracidobacterium thermophilum]
          Length = 363

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 149/362 (41%), Gaps = 31/362 (8%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           +    +  L EG+ V      + L N A   ++        P   I              
Sbjct: 12  LLEAVLGSLREGILVIDQQTEVVLYNQAAIDIFNLSPVMTGPLRLID--------ITRNK 63

Query: 495 DGWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPL--PNAQTMLTFVNVTDSVR 550
              D F  ++    +E +     LE+  + +    +   PL  P+A  ++  + V     
Sbjct: 64  AIHDGFRQVL----EEGRPFDAELEIFGIQERTFSFRATPLIMPSAHEVVGAIGVF---- 115

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
                      L + + ++  F  ++S+ELR+PLT+I+ + + L    +   N    Q++
Sbjct: 116 ------FDVTQLVRLERVRREFFANLSHELRTPLTSILAYVETLLNGAIYD-NENNIQFL 168

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+  +T + NLV DI DL+ ++AG  KL   TI L   ++ +   +  +     +  +
Sbjct: 169 QIINKHATRMQNLVRDIADLSAIEAGEFKLEPVTIELKAFVDNLAVLVLPEATTRQVTFR 228

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVKNNGSS 729
                 +    AD Q L QI   ++ NA+ F+  G  V++ A  ++    + +V++ G  
Sbjct: 229 NEVPAGV-QVYADPQALEQILMNLIINAVKFNRPGGEVVVTANFESDVRTVIAVRDTGIG 287

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I       +F R         +   G GLGL+IV+  +  HGG +S+ S+    +    R
Sbjct: 288 IEAKHLGRIFERLYRVDKSRSQEVGGTGLGLAIVKHLVLNHGGDISVDSTPGVGSEFRVR 347

Query: 788 IP 789
           +P
Sbjct: 348 LP 349



 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 71/216 (32%), Gaps = 32/216 (14%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF-----LATNPSNDELLEFLRSA 362
              +L +L   I + DQ   +  +N++ ++++ +         L     N  + +  R  
Sbjct: 13  LEAVLGSLREGILVIDQQTEVVLYNQAAIDIFNLSPVMTGPLRLIDITRNKAIHDGFR-- 70

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             L E   +    E      ++         +P         +++   G I +F ++T  
Sbjct: 71  QVLEEGRPFDAELEIFGIQERTFSFRATPLIMP---------SAHEVVGAIGVFFDVTQL 121

Query: 423 VDLET-----------KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           V LE            +  T +      ++ L  G A++  +  I+      + + K   
Sbjct: 122 VRLERVRREFFANLSHELRTPLTSILAYVETLLNG-AIYDNENNIQF----LQIINKHAT 176

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
              +    I +++A  +  +          A + + 
Sbjct: 177 RMQNLVRDIADLSAIEAGEFKLEPVTIELKAFVDNL 212


>gi|32400390|dbj|BAC78684.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 156/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 969


>gi|150018233|ref|YP_001310487.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149904698|gb|ABR35531.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 403

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 149/335 (44%), Gaps = 8/335 (2%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            A++ L +     +     +  I     CS     S   D+    +T  D++       +
Sbjct: 41  EAYKFLEENIPELILLDVDMPEIDGFEVCSTLKKGSKYKDIPIIFLTVKDEK----DDIV 96

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +      ++Y   P    + +          + +  L +KN  L +  E+K+ F+  +S+
Sbjct: 97  KAFDLGAVDYVTKPFNRKELVSRVRTHISLKKTKDELKKKNLELERTLEMKDEFLSLISH 156

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E R+PL  I      +       L+ K  +Y+  I  ++   L LVN++LD+  V+AG +
Sbjct: 157 EFRTPLNVISSAIQAMNYICSDELSDKAKKYLRMIRQNTFRQLRLVNNLLDITRVNAGRI 216

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           K+N   + +  L   + +SI T +   +I +  +S  +      D ++  +I   +LSNA
Sbjct: 217 KINKKNVDIVFLTKSIIESIYTYVALKSIDVTFVSLIEKKIIGIDDEKYERILLNLLSNA 276

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGL 756
             F+ +G  +I+  +  +      VK+ G  IPED    +F RF  V ++   Q  G G+
Sbjct: 277 TKFTPEGKPIIVTLSSIDDKICVEVKDKGIGIPEDKANIIFERFGQVDSSLSRQAEGAGI 336

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLS+V+ FI   GG +S+ S     +T    +PS+
Sbjct: 337 GLSLVKKFIEALGGSISVKSELGKGSTFTILLPSE 371


>gi|328553750|gb|AEB24242.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
          Length = 739

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 139/782 (17%), Positives = 296/782 (37%), Gaps = 80/782 (10%)

Query: 39  IPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV------WDGKDET 92
           +   L ++ + SL +++         +   L +YH ++        +          +E 
Sbjct: 1   MAETLDLQTKESLKEQLKRMKEENDRLKSDLHRYHVIMNNTLDAIFICHKEMKIVQANEA 60

Query: 93  PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152
              + Q+     I ++  D L            +L+KA +K  K+G  +  V    +   
Sbjct: 61  AARMMQIEAESLINRSVLDFLY------SVPQEELNKAVKKFLKKGHLWKEVPIKLD--- 111

Query: 153 IKIEGRVSGSCAFLRILSLDG--------IYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
                  SG+  ++  L+ DG        +  +++   +  ++ S +  +FK LFD    
Sbjct: 112 -------SGATKYIEFLAKDGIGEDYFFVVMRDISSKKILEREFSMNEQLFKDLFDRAVD 164

Query: 205 LVWHRDQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
            +   D+ G  + AN+S+ K+ E  +  +   ++    +    +  K +  +   +    
Sbjct: 165 GIVLFDKDGGFIDANLSFCKSFEIGQNELSHLSLRHFTEGENNKHLKEIWDTLGKKGKAK 224

Query: 264 ETVST-LEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQL----THTYEILHNLT 316
             +   L  G  K ++     N      ++I  D++++ ++  +L        EI  N  
Sbjct: 225 GELPVKLRSGEEKLFEFTITSNLISGFYMSIMRDITEKRSMELKLFKSEERFREIFENAM 284

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            AI I+  +  +   N S   ++E+ +  L        L  F+            K +K+
Sbjct: 285 DAIVIWSDDGRIAKANESACRIFELPMDKLVER----NLCSFIVD--------PQKKYKQ 332

Query: 377 NIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTL 432
                 K  E  ++  + + NGQ   +  TS      G  + +  N++ +  +E +    
Sbjct: 333 IKKKYEKYGEIREEMLFQMANGQYKELEFTSKRTILEGQHLTILRNVSDRKRMEKELRES 392

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                +  +   +G  +F    RI  +NP    +    +  L   T    +    S +  
Sbjct: 393 ELKFRKVFNGSMDGKVLFDNQFRIIDANPLASRILGMPDEELRAYT----VPDILSLFDI 448

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRA 551
           E+ G       +   D+E   L   L       LE+S    +     +  F +VT++   
Sbjct: 449 ENAGVPARKIDLEGMDNEIPFL---LSSSDSRKLEFSFKRNIIQNMNLAIFKDVTEAKEL 505

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L + +                +++E+R+P+T + GF  LL+    GS+  + S Y  
Sbjct: 506 EERLRKSDTLHVVG-----ELAAGIAHEIRNPMTALKGFIQLLQ----GSIEGEHSLYFN 556

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I++    + +++ + L LA   A    + Y    +  ++ +    +  + +  N++I +
Sbjct: 557 VITSELKRIESIITEFLILAKPQA----ILYEEKDVTQIMKDTADLLNAQANLVNVQIHL 612

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSI 730
              G +     +  +L Q+F  IL NA++    G  + +     D    + S+++ G+ +
Sbjct: 613 NLTGNIPPIYCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQPSDKDHILISLQDEGTGM 672

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ED  K +   F       + RG GLGL +    I  H G + + S +   T  +  +P 
Sbjct: 673 SEDKLKRLGEPFY----TTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLPI 728

Query: 791 KE 792
           ++
Sbjct: 729 RQ 730


>gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
 gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
          Length = 1468

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 14/269 (5%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q        ++  +A + L ++ + L  A + K+ F+ ++S+ELR+PL +++    LL  
Sbjct: 885  QNRDIETKNSEIEQARQELEDRAKQLALASKYKSEFLANMSHELRTPLNSLLILAQLLAQ 944

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L +KQ +Y   I ++ T LL L+NDILDL+ ++AG M ++  ++ L  LL+ V+ 
Sbjct: 945  NPARNLTAKQVEYANVIHSAGTDLLQLINDILDLSKIEAGKMNISLESLPLRQLLDYVEA 1004

Query: 657  SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +      E  +R  V     +    + D QRL Q+   +LSNA+ F+  GS V L+  R 
Sbjct: 1005 TFRPLTTEKGLRFDVTVASDVPGELLMDEQRLRQVLRNLLSNAVKFTETGS-VQLRIERA 1063

Query: 716  N----------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
                           F V + G  I E+    +F+ F         +  G GLGLSI   
Sbjct: 1064 GRMELLGVPGQETLAFHVVDTGIGIAEENLSQIFDAFQQADGTTSRKYGGTGLGLSISRE 1123

Query: 764  FINLHGGHVSISSSDEGVTTINCRIPSKE 792
               L  G +   S+    +T +  +P  +
Sbjct: 1124 IAALFNGEIRAVSALGEGSTFSLCLPIAD 1152


>gi|148976729|ref|ZP_01813401.1| sensor protein TorS [Vibrionales bacterium SWAT-3]
 gi|145963842|gb|EDK29101.1| sensor protein TorS [Vibrionales bacterium SWAT-3]
          Length = 1004

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 115/234 (49%), Gaps = 7/234 (2%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +A   K++F+  +S+E+R+P+  ++G   LLK + L  L   QS Y + I+ S   LL
Sbjct: 463 AEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLNPL---QSGYADIINRSGKNLL 519

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ND+LD + ++AG +++  ++  L+ ++ +  Q +  +  E  +      +  +  + 
Sbjct: 520 AILNDVLDYSKIEAGHLEIRIASFDLHQMVQDTYQLMEGRAAEKKLGFSYHIESDVQRYW 579

Query: 682 -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAA-RDNGDFIFSVKNNGSSIPEDMCKSV 738
             D  R+ QI + ++ NA+ F+ KG   + +     D    +F V + G  I E   K +
Sbjct: 580 RGDVTRISQILNNLVGNAIKFTDKGDVDIFISLDLEDENRVMFEVSDTGVGIHESEQKCL 639

Query: 739 FNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F+ F   N+ R    G GLGL+I +  +    G + + S +   +     +P +
Sbjct: 640 FDAFSQTNSGRNTTGGTGLGLAISKRIMLAMDGDIGVHSEEGEGSQFWFSLPLQ 693


>gi|304313326|ref|YP_003812924.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301799059|emb|CBL47302.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1224

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 143/327 (43%), Gaps = 18/327 (5%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +          ++  +  A+I+ + ++  ++ Q  L  +++ +   +++   + Q   
Sbjct: 438 ETLEQQQEELRVTNEELEEQASILRASEESLQAQQEELRAVNEELENRNVV--LDRQKDE 495

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              N     R+ + L +K   L  ++  K+ F+  +S+ELR+PL +I+  +  L  ++  
Sbjct: 496 IIQNNEALERSRKELQDKAYELEMSNRYKSEFLSTMSHELRTPLNSILILSQGLMENRQQ 555

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L  KQ ++   I +S   LL L+NDILDL+ V+ G  +L    + L DL  E+     +
Sbjct: 556 NLLDKQVEHARVIHSSGRDLLMLINDILDLSKVEEGKFELLVDQVNLADLSKELHAMFDS 615

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD--- 715
           +     +   V  D +L  + V D  RL QI    +SNA+ F+  G   V ++       
Sbjct: 616 QAEHKKLEFIVNLDERLPETVVMDEHRLNQILRNFISNALKFTHTGRVEVNIRVPEALVK 675

Query: 716 --------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
                        FSV++ G  I +D    VF  F         +  G GLGL+I     
Sbjct: 676 FGEQWLAPPEAISFSVRDTGIGISKDKQALVFEAFQQVDGTISRKYGGTGLGLTISRKLA 735

Query: 766 NLHGGHVSISSS-DEGVTTINCRIPSK 791
            L GG +S++S  +   +     +P +
Sbjct: 736 KLMGGGISVASEGENKGSEFTLVLPRR 762


>gi|291551123|emb|CBL27385.1| Signal transduction histidine kinase [Ruminococcus torques L2-14]
          Length = 696

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 152/357 (42%), Gaps = 14/357 (3%)

Query: 447 VAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII- 504
           + V   D  I ++            E   +       I  T ++ +   +   +   I  
Sbjct: 183 IIVIDWDKFIDEIGMERLSEASYCYEIWTNDENTDDRIVLTQNQEHMPENSLTVECKIPN 242

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---ALTEKNEA 561
            ++  +    +G + +     +  S + +      +     +   R ++    L +  E 
Sbjct: 243 YTWYVDIVPKEGWISIYQWIAVIVSALIIAMMGATIFDQICSKKRREKQYAAELKKSAEQ 302

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++A E K  F+ ++S+++R+P+  IIGF+DLL   K      K  +Y+  I +S   L+
Sbjct: 303 AKEASEAKTRFLFNMSHDIRTPMNAIIGFSDLL--GKNLKNEEKAREYLGKIKSSGNFLM 360

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +++ +L+ A +++G   L      L+++   V     + +    I+  + ++ +    V
Sbjct: 361 TIIDQVLEKARIESGTAVLKMQAENLSEMFYSVNTVFESDIQSKEIQYSIDTNIQHKYAV 420

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCK 736
            D+ +L +I+  I+SNA+ ++  G  + +       D     ++F  ++ G  + ++   
Sbjct: 421 CDKTKLQEIYLNIVSNAIKYTPNGQAIHVNITETASDDKKAWYVFICEDTGIGMKQEYLP 480

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +F+ F       + +  G GLGLSIV+SF+ L GG + + S     T     IP +
Sbjct: 481 HIFDEFSREHTATENKVVGTGLGLSIVKSFVELMGGKIYVESEQGKGTKFTVEIPLE 537


>gi|58696692|ref|ZP_00372242.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58698386|ref|ZP_00373299.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630987|ref|YP_002727778.1| sensor histidine kinase [Wolbachia sp. wRi]
 gi|58535099|gb|EAL59185.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58537134|gb|EAL60244.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592968|gb|ACN95987.1| sensor histidine kinase [Wolbachia sp. wRi]
          Length = 475

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 160/379 (42%), Gaps = 25/379 (6%)

Query: 429 YNTLVKVQGETIDHLSE----GVAVFGPDGRIKLSN--------------PAFRSLWKTE 470
            N LVK++ E +  +S+     + ++  +GRI  SN                   L   +
Sbjct: 86  INQLVKLRAELLQSVSKVKDFSLILYDQNGRIIFSNFNTQDYDYEQLLTNDEIDKLLSDQ 145

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E   + G  + +I      ++  S     F  I+ S+++      G   +    +L   I
Sbjct: 146 EILYTTGNTLTSIFPI---FHENSAKPSFFLKILRSYNNSYVIAYGLFLIFLGLLLIILI 202

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + +       T + +    +    L +  EAL + +  K  F   V++ELR+PL  IIGF
Sbjct: 203 LIMFYLHFSNTKM-LAKQHKTNIELQQIKEALEQENANKLKFFASVTHELRTPLNAIIGF 261

Query: 591 TDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +L+K   LGS++  Q  +Y + I  + T LL L+ND+LD +  ++  + +      LN 
Sbjct: 262 AELIKNETLGSMDDSQYKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNK 321

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++     +  K+ E  I +K     K    +AD +R+ Q+   +LSN++ F+ K   + 
Sbjct: 322 IIDSCVNMLLPKLKEAGINLKKEMTNKQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIR 381

Query: 710 LKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           +      +         +NG  I +     V + F       +  G G+GL + +  + L
Sbjct: 382 MVIKENIEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRNEGTGIGLPLSKKLVEL 441

Query: 768 HGGHVSISSSDEGVTTINC 786
            GG   I S  +  TTI  
Sbjct: 442 MGGTFDIKSEAKLGTTITL 460


>gi|90579036|ref|ZP_01234846.1| Hypothetical sensor protein TorS [Vibrio angustum S14]
 gi|90439869|gb|EAS65050.1| Hypothetical sensor protein TorS [Vibrio angustum S14]
          Length = 971

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 119/237 (50%), Gaps = 7/237 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   KA+  K+SF+  +S+E+R+P+  ++G   LL  ++   L S+Q +Y++ I+ S  
Sbjct: 460 RDEAEKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQ---LTSQQKRYLDVINRSGE 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL- 677
            LL+++NDILD + ++AG + +  S   +  ++ +V   +  +     I ++     ++ 
Sbjct: 517 TLLDILNDILDYSKIEAGHLDIRPSNFSVVRMVTDVSSMLEGRALAKRIGLECHISPQVE 576

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD-NGDFIFSVKNNGSSIPEDMC 735
           G +  D  R+ Q+   ++ NA+ F+  G   + ++   D   + +FSVK+ G  I ++  
Sbjct: 577 GMWFGDESRIRQVLVNLVGNAIKFTDTGKVSIFVEPHPDMPDELLFSVKDTGIGIDQEEQ 636

Query: 736 KSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +F+ F    A R    G GLGL+I +  +    G + + S     +     +P +
Sbjct: 637 NILFSAFQQAEAGRKSIEGTGLGLAISKHIVAAMDGEIGLESVVGEGSCFWFALPLE 693


>gi|256828313|ref|YP_003157041.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577489|gb|ACU88625.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 940

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 15/246 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVE 611
           + +  + ++     + K++F+  +S+E+R+P+T I+GF +L L+    G L     QY+ 
Sbjct: 408 QTMAVQRQSAEAMAQAKSTFLASMSHEIRTPMTAILGFLNLSLQMRPEGQL----RQYLL 463

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+  L+ ++NDILDLA ++A  M+L+     +  +L +    +  +  EN   + V
Sbjct: 464 KIRTSAQHLMGIINDILDLAKIEADKMELDADPFEVEAVLRDTADILVARAFENGNELVV 523

Query: 672 ISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSV 723
                L    V D  RL QI   +  NA+ F+  G+  +     ++G          F V
Sbjct: 524 SVQPGLQHRLVGDSLRLKQILVNLGGNAIKFTRNGTVRLAVLRAEDGPSSEDAVTLRFQV 583

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I   +   +F  FV       R   G GLGL+I    ++L GG +++ S     
Sbjct: 584 SDTGIGIDAAVLPRLFESFVQADTSTARVYGGTGLGLNISRRLVHLMGGEIAVRSQLGQG 643

Query: 782 TTINCR 787
           +T    
Sbjct: 644 STFQFT 649


>gi|325186907|emb|CCA21451.1| hybrid signal transduction histidine kinase putative [Albugo
            laibachii Nc14]
          Length = 1963

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 109/639 (17%), Positives = 235/639 (36%), Gaps = 66/639 (10%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
            +A      ++++      + L D+ +  ++  D  G +   N +  + T+          
Sbjct: 654  IAIGQGTAERVTQEHEYSR-LIDTANAPIFGVDTNGCVTIWNKTVAEITQYSSSEVMDKK 712

Query: 238  GESR--KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF-------GE 288
             E      +K  +   +  +    +      S +     +   ++   + F       G 
Sbjct: 713  LERFIMDDYKAAVGSVLEKAFDGVETANFEFSLISKLGRRVDILMNATSRFDEHGHVVGM 772

Query: 289  AGIAIDVSKEITVNDQLTHTYEILHNLTV-AIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             GI  D+S  I    + +   +   N  +  +   D +  +   N+   ++    +    
Sbjct: 773  VGIGQDISNRIAQEHEYSRLIDT-ANAPIFGV---DASMCVNIWNKKAAQITNYSI---- 824

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLHVIVT 405
                N+ + E L      PE        + +    K  +T    + L    G  + +++ 
Sbjct: 825  ----NEVMGENLVETFISPEYR--PIVADVLSKALKGIQTANFEFPLITRPGTRIEILLN 878

Query: 406  SNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            + PR        G + + +++T ++  E +Y          ID  +  +     +G I  
Sbjct: 879  ATPRMDSIGNIVGVVGIGQDITDRIAQEHEY-------FHLIDTANAPIFGVDKNGNINE 931

Query: 459  SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
             N     +    ++ +   + +       SR       +     +            G +
Sbjct: 932  WNQKIEQITGYTKSCVLGLSLVNTFVIPESRMQVRQLLYQALTGVDV----------GEM 981

Query: 519  ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            EL   +   + ++ L NA    +  ++  ++R    + +   A +  +E+K  F+   S+
Sbjct: 982  ELPMTTKKGHYLLLLVNA---SSKKDMHGNIRGAIGVGQDYTARKHMEEVKVHFLASFSH 1038

Query: 579  ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
            ELR+PL +I+G  +LLK  +    +S++  ++ Y+S S  + L       DL+ ++ G M
Sbjct: 1039 ELRTPLNSILGMLELLKDKRGLDKDSERHVHMAYVSGSLLLNLINDIL--DLSKIETGHM 1096

Query: 639  KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSN 697
            ++  +   +NDLL+   +    K  E NI ++      +    + D  RL QI   +LSN
Sbjct: 1097 EITAAPFHMNDLLDYSIEIFQFKARERNILLQQECSDDVPKLVIGDVVRLRQILLNLLSN 1156

Query: 698  AMDFSSKGSTVILKAARDN-------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG- 749
            A+ F+S+GS  +  +  D           +F V + G  +  +    +F  F        
Sbjct: 1157 AIKFTSEGSITVACSVVDEPALPPQFKKLLFQVIDTGVGMDVEDRSRLFCLFSKLERTRP 1216

Query: 750  -QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                G GLGL+I +  + L  G + ++S     +     
Sbjct: 1217 NNPTGSGLGLAICKQLVELMDGAIDVASELNQGSNFYFT 1255


>gi|154500004|ref|ZP_02038042.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC
           29799]
 gi|150271602|gb|EDM98859.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC
           29799]
          Length = 821

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/403 (20%), Positives = 158/403 (39%), Gaps = 24/403 (5%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP----DGRIKLSNPAFRS 465
           G  + +F  LT  V  + + N  +K  G TI  LS+           +G  +      R 
Sbjct: 273 GVGVLLFVVLTAMVIRDLQQNKRIKKAGNTIRILSDSFYAVYRVNFREGTYEAI-KMSRD 331

Query: 466 LWKTEENRLSPGTHIRNIAATC-SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           L             +  +     S  Y E +      +I     +      G        
Sbjct: 332 LEPQMPRTGGYDFLLATVKQVVESGTYQEFELNFSLESIRQRVSEHIADYGGDYRRRFGE 391

Query: 525 VLEY-SIIPLPNA----QTMLTFVNVTDSVRAERA-----LTEKNEALRKADEIKNSFVQ 574
           + ++ +I  L +       ++      D  + ++      L E  EA +K+ + K+ F  
Sbjct: 392 IYKWVNIRTLYDEKLAPDEVILCFRDVDIEKRQQLQHTIILQEALEAAKKSTKAKSDFFS 451

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+++R+PL  IIGF+ L + +     + K   Y++ I  S   LL L+NDIL+L+ ++
Sbjct: 452 SMSHDMRTPLNAIIGFSQLAQKN--SDDSGKVRDYMQKIEFSGKQLLALINDILELSKME 509

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG   LN     L   + E       +      R     D      V D  ++ QI + +
Sbjct: 510 AGKNALNNQRFNLKKYVEEAADIFREQAEHQGKRFTADLDMHNEIVVGDEFKIGQILNNL 569

Query: 695 LSNAMDFSSKGSTVILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
           LSN++ +S+ G+ + L+      R +  +   V++ G  +     + +F+ +        
Sbjct: 570 LSNSLKYSNPGAEIHLEIRQFDFRRHSKYQIVVEDTGIGMSRQFLEHLFDPYSRETCFTS 629

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               G GLG+ IV+S +    G +S+ S+    +     +P +
Sbjct: 630 AATVGTGLGMPIVKSLVQQMSGEISVESTLGKGSKFTVTLPLE 672


>gi|83647612|ref|YP_436047.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635655|gb|ABC31622.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 652

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 132/335 (39%), Gaps = 15/335 (4%)

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII--TSFDDERKSLQG 516
            N          +         R       +   E+        II  T  DD R     
Sbjct: 45  CNAEVARTALARDEHHVCLMDYRLGPDDGLKLLREAPKLGFHGPIIMLTGQDDSRLDADA 104

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               L    ++Y +    N+  +   +    + R               +  K+ F+ H+
Sbjct: 105 ----LRGGAVDYLVKSDLNSAHLARAIRYALARREMETERLVRLKAEAENRSKSEFLAHL 160

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT I+G+T+LL        N     +++ +  +   LL+L+NDILD++ ++AG
Sbjct: 161 SHELRTPLTAILGYTELLIAQNSIPDN---LSHLQIVQRNGQHLLSLLNDILDISKIEAG 217

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            +++ +  + L   L ++   +A    + N++++ I+D  L      D  RL Q+   ++
Sbjct: 218 KLEMEFVRVNLQTYLADLYSLMAVSARDKNLQLRFIADMPLPENIETDPIRLRQVLLNLI 277

Query: 696 SNAMDFSSKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQ 750
            NA+ F+ +G  ++        +     F V + G  I +   K +F  F         +
Sbjct: 278 GNAIKFTEQGEIIVRVQMIKEEEQEKIQFKVIDTGPGINQTDQKRLFQPFTQAYANSIRR 337

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             G GLGL+I        GG + +SS     +   
Sbjct: 338 SEGAGLGLAISRQLAQRLGGDIRLSSQPGKGSEFT 372


>gi|296185127|ref|ZP_06853537.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296049961|gb|EFG89385.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 487

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 131/281 (46%), Gaps = 11/281 (3%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---ADEIKNSFVQHVS 577
           ++D +  +    + N        N  +    E  L E N+ L +    ++++  F  ++S
Sbjct: 174 IADVIRNHKYTLIKNEAEWSVLKNS-ELELKEIKLKESNKMLGEALEYNKLRTEFFSNIS 232

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSK-----QSQYVEYISASSTILLNLVNDILDLAT 632
           +EL++PLT I+    LL       LN K     + +Y++ I  +S  LL LVN+I+DL  
Sbjct: 233 HELKTPLTIILSALQLLNEKNSTHLNEKINENTEKKYIDIIKQNSYRLLRLVNNIIDLTK 292

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           +D+    +    + + +++     S+A  +  N I+I   +D +      D  +  +I  
Sbjct: 293 IDSDFFDIQLKNLNVVEVVENTVLSVAEYIKSNGIKITFDTDVEEKIMAIDIDQFERIIL 352

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
            ++SNA+ F+     + +         I SVK++G  IP+D    +F RF        R 
Sbjct: 353 NLISNAIKFAKPEGNIWVSLYDKQDHLIISVKDDGKGIPKDKLPIIFERFYQIDKSLSRE 412

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G G+GL+IV+S +  HGG ++++S+    +    + P +
Sbjct: 413 CEGSGVGLAIVKSLVEKHGGKITVNSTLGVGSEFTMKFPIR 453


>gi|182412780|ref|YP_001817846.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839994|gb|ACB74246.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 734

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/250 (32%), Positives = 125/250 (50%), Gaps = 13/250 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + ER L E+      A   KN+F+ ++S+E+R+P+  I+GF+DLL T      +SK  Q 
Sbjct: 212 QNERLLAEQAIRAESAAREKNAFLANMSHEIRTPMNAILGFSDLLATEL--PADSKARQR 269

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  S+T LL L+NDILDL+ +DAG+++L+     L +L + +    A +     + +
Sbjct: 270 VRAIRESATSLLQLINDILDLSKIDAGVVELHPEPTDLRELSDFMHTVFAQQAARKTLVL 329

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------RDNGDFIF 721
           +   D  L    + DR RL QI   ++ NA+ F+  G TV L          R +G    
Sbjct: 330 ECEIDPALPHALMLDRSRLRQIVVNLIGNAIKFTEHG-TVKLGIRWAHHPANRGSGTLEI 388

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  IP +  + +F  FV       G+++G GLGLSIVE      GG V++ S   
Sbjct: 389 EVADTGVGIPPEKQREIFQPFVQVDPQRAGEKQGSGLGLSIVERITQRMGGTVTLQSEVG 448

Query: 780 GVTTINCRIP 789
             T      P
Sbjct: 449 RGTRFRLIFP 458


>gi|116251150|ref|YP_766988.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255798|emb|CAK06879.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 526

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 138/307 (44%), Gaps = 16/307 (5%)

Query: 489 RYYNESDGWDLFAAIITSFDDERK----SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           R   ++   DL     +   D+R+     +  T    +D  L   I  L +         
Sbjct: 180 RRGEDAQSVDLRLDRPSVSRDQRQFAYLRMDMTARRDADGELAAIIAQLRDVSV------ 233

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LN 603
                +       +      A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N
Sbjct: 234 ---EQQLRDEAQNRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFEN 290

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A +  
Sbjct: 291 DRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISSSVKSCESMLALQAK 350

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    +V
Sbjct: 351 TKGLTLTSRIQRGLGEVVADQRAIQQILINLVGNAIKFTEAGGVVSVDAAARDGILKLTV 410

Query: 724 KNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP D    +   FV   N +  +  G GLGLS+V+  + LHGG+ +I+S     
Sbjct: 411 SDTGIGIPADKLALLGQPFVQIQNDYTRRFEGSGLGLSLVKGLVALHGGYFAIASQPGEG 470

Query: 782 TTINCRI 788
           T I   I
Sbjct: 471 TIITIEI 477


>gi|325914837|ref|ZP_08177172.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538928|gb|EGD10589.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 291

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR+  E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 43  ELDQQAEQLREVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNTEQLKQVRFV 102

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           SAS+  L  +V+D+LDLA ++AG + ++     L DL   ++             +    
Sbjct: 103 SASTRELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDVGTTTLIFED 162

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +L          FSV++ G  I  +
Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVLAQLEGTDHVRFSVQDTGIGIAPE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  ++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 223 LHDALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINSVVGQGSEFFVVLP 280


>gi|229048377|ref|ZP_04193945.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676]
 gi|229147237|ref|ZP_04275594.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24]
 gi|228636246|gb|EEK92719.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24]
 gi|228723102|gb|EEL74479.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676]
          Length = 484

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + +N   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGKIWAESELGKGTSIFFSL 476


>gi|170726313|ref|YP_001760339.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811660|gb|ACA86244.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1680

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/324 (24%), Positives = 138/324 (42%), Gaps = 18/324 (5%)

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQTML 540
            +  T  +        +   +   S  ++ + L+ + E L D    L+ S   L   QT  
Sbjct: 903  LVETQRQSEELQAQQEELKSSNDSLVEQTQRLKASEEELKDQSEALKVSNKELEEKQT-F 961

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                  +   A   LT K + L  A + K+ F+ ++S+ELR+PL +++     L  +K  
Sbjct: 962  LKRQRDEIESARADLTVKADELALASKYKSEFLANMSHELRTPLNSLLLLAKGLADNKSK 1021

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +LN  + +  + I      LL L+NDI+DL+ V+AG + ++   + ++ L   ++Q    
Sbjct: 1022 NLNETEVEDAQVIFDGGNNLLCLINDIMDLSKVEAGKLSIHIEEVNISTLCRNLRQVFNP 1081

Query: 661  KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--------- 710
                  +   +  D KL  +  +D  R+ QI   +LSNA+ F+  GS  +          
Sbjct: 1082 IAKNRELEFDIKVDEKLPATVSSDGHRIEQILRNLLSNALKFTEAGSVTLFIGYSAADTV 1141

Query: 711  ---KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
                    N    F+V + G  IP++  +++F  F        R   G GLGL+I     
Sbjct: 1142 FSHSCLDPNTALSFAVVDTGIGIPQNKIQAIFEAFQQQDGSTSRKYGGTGLGLTIARELT 1201

Query: 766  NLHGGHVSISSSDEGVTTINCRIP 789
             L GG + + S     +T    +P
Sbjct: 1202 RLLGGEIQLESEPNQGSTFTLFLP 1225



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 65/456 (14%), Positives = 153/456 (33%), Gaps = 53/456 (11%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           +   +   LS  +S+ K +  +    +      G IL  N++ ++  +    + +  IG+
Sbjct: 335 QIKERNTSLSRSLSLNKGIVSTAVDGIISIKDDGTILSVNLATERMFKY---LAEDLIGK 391

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHG--------NNKSYKIVRVLNSFGE--- 288
           + K+   E       +   +       S +  G        +  ++ I   +    +   
Sbjct: 392 NIKVLMPEPYHSEHDNYLSKYKNTGIKSVIGKGREVQAMRSDGSTFPIFLSVGEVQQGDE 451

Query: 289 ---AGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
               G   D+S++     ++  +      ++     AI        +   NR+   L++ 
Sbjct: 452 TLYTGFIRDISQQKQYEQEMLKSEALNRGMVDTCLDAILSISAKGVIIACNRAAESLFQY 511

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
               L     N      L  +    E   + +   N  +     +  +      +G T  
Sbjct: 512 SRDDLLGKKIN-----LLMPSPFTEEHDTYLSNYLNTGTKKVIGQGREVIGLKRDGSTFP 566

Query: 402 VIVTS---NPRGGTIWM--FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           + +T       G +I+     ++TV+   E +      +    +D   + +      G I
Sbjct: 567 MYLTVGEVIQEGESIFTGFVRDITVEKKFEQEMMKSEALNRGMVDTCLDAILSISVKGVI 626

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N A +SL++   + L  G  I  +  +     ++      FA  I     + + + G
Sbjct: 627 VSCNHAAQSLFQYRSDEL-IGQKINRLMPSPFTEEHDGYLEKYFATGIKKVIGQGREVVG 685

Query: 517 TLELLSDSVLEYSIIPLP-NAQTMLTFV--NVTDSVRAERALTEKNEALRKADEIKNSF- 572
                S   +  ++  +  + +T+ T    +++   + E  L + NE L K +E+K+   
Sbjct: 686 LKRDGSTFPMYLTVGEVEQDGETIFTGFVRDISKEKQYELELKKTNEDLLKQNELKSQVS 745

Query: 573 -----------VQHVSYELRSPLTNIIGFTDLLKTS 597
                      +  +S E+      I    +++K  
Sbjct: 746 RINDLTQGATDMMAMSDEI------ISALAEMMKAG 775


>gi|73748463|ref|YP_307702.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73660179|emb|CAI82786.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 852

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 116/680 (17%), Positives = 245/680 (36%), Gaps = 48/680 (7%)

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
              ++    GQ F+L    +N       G    S    R      +    ++ T+ CKK 
Sbjct: 203 MFQDRKPDTGQPFELQLIHKNGQTCWFSGH---SRIINRDNKSSYLQLSASDITI-CKKS 258

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA-IGESRKLFKEE 247
              + + +   +     ++  D  G+ +  N S   +         K  + +   L   +
Sbjct: 259 EKMLRLTRFALEQTTDAIFWTDSEGNFIDVNQSACNSLGYRREDLLKLKVTDIDALITNQ 318

Query: 248 IKKRMISSSALEKNF--CETVSTLEHGNNKSYKIV----RVLNSFGEAGIAIDVSKEITV 301
           I  +    +     +   E++     G     +I     +  N      IA ++      
Sbjct: 319 IDWKAHWKNLKTSAYLSFESIHRNISGEEIPVEITANYMQCDNMEYNVAIARNIHLRKKA 378

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             QL  T   + +   ++   +Q+  +   N S  +        L +          L  
Sbjct: 379 EKQLKFTSFSVEHTADSVLWINQSGSIIAANMSACQSLGYTRTELCS----------LNV 428

Query: 362 ANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVTSN-----PRGGTIWM 415
            N  P     + WK     + ++ + + +      NGQ + + V  N            +
Sbjct: 429 ININP-VCVAERWKTLWVRLKQAINFSLESDMFTKNGQQIPIEVMCNFLEFEGIDYCCAV 487

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T +  ++ +     +    T D++S+ V +   D  I+ +N AF      +   + 
Sbjct: 488 LRDITERKKVDARLLRAAEEWRITFDNISDIVFLLDNDFNIQRANRAFTKTLNCQPQDV- 546

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                  +   C +  + +D   +    + +F+ ++       E   D   E +I P+ +
Sbjct: 547 -------LNKKCYQVLHHADCPKVNCPKLIAFNTKKTQRIAYFEENIDKHFEETIDPILD 599

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +      T     E         +             +++EL +PLT++IGF++L++
Sbjct: 600 ANGLSMGTVHTIKDVTEHHKIAAQLMITDRLASLGELSAGLAHELNNPLTSVIGFSELIQ 659

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L     Q ++ IS  +     ++ ++L  A       + +   + +N ++++V 
Sbjct: 660 EKI---LPEDLRQDIQIISQEAQRAAEIIRNLLTFAR----RHEPSKDWVDMNQIIHKVL 712

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF---SSKGSTVILKA 712
                    +NI++    D  L    AD  ++ Q+   I+ NA  F   S    T+++ +
Sbjct: 713 AICNYGQKVHNIQLITNLDPNLPEIKADYFQMQQVLLNIVINAEYFMTQSHGEGTIVISS 772

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            + N     S++++G  + E++   +F+ F +    G  +G GLGLSI    I  HGG +
Sbjct: 773 RKFNDSIQISIRDDGPGMSENVLNHIFDPFFTTKEVG--KGTGLGLSIGHGIITQHGGKL 830

Query: 773 SISSSDEGVTTINCRIPSKE 792
              SS+    T    IP  +
Sbjct: 831 YAESSEGKGATFFIEIPINQ 850



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 106/315 (33%), Gaps = 34/315 (10%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK---RMISSSALEKNFCETVS 267
             G +++AN  +++ T            +S  LF  E      +M      +      + 
Sbjct: 159 PDGKLIFANHIFEEVTGYLVSEVTGEDWKSCGLFSRETTDLIIKMFQDRKPDTGQPFELQ 218

Query: 268 TL-EHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI 321
            + ++G    +      I R   S      A D++        L  T   L   T AI  
Sbjct: 219 LIHKNGQTCWFSGHSRIINRDNKSSYLQLSASDITICKKSEKMLRLTRFALEQTTDAIFW 278

Query: 322 FDQNRYLQFHNRSFVE-LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT-WKENIF 379
            D        N+S    L       L    ++ + L        +  Q++WK  WK    
Sbjct: 279 TDSEGNFIDVNQSACNSLGYRREDLLKLKVTDIDAL--------ITNQIDWKAHWKNLKT 330

Query: 380 SVYKSSET-HKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLV 433
           S Y S E+ H++     +G+ + V +T+N          + +  N+ ++   E +    +
Sbjct: 331 SAYLSFESIHRNI----SGEEIPVEITANYMQCDNMEYNVAIARNIHLRKKAEKQ----L 382

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           K    +++H ++ V      G I  +N +           L     I NI   C     +
Sbjct: 383 KFTSFSVEHTADSVLWINQSGSIIAANMSACQSLGYTRTELCSLNVI-NINPVCVAERWK 441

Query: 494 SDGWDLFAAIITSFD 508
           +    L  AI  S +
Sbjct: 442 TLWVRLKQAINFSLE 456



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 83/276 (30%), Gaps = 41/276 (14%)

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           F  +  L F N  F E+    ++ +           F R    L      K +++     
Sbjct: 157 FQPDGKLIFANHIFEEVTGYLVSEVTGE-DWKSCGLFSRETTDL----IIKMFQDRKPD- 210

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             + +  +      NGQT      S      N          ++T+    E     ++++
Sbjct: 211 --TGQPFELQLIHKNGQTCWFSGHSRIINRDNKSSYLQLSASDITICKKSEK----MLRL 264

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL------SPGTHIRNIAATCSR 489
               ++  ++ +     +G     N +  +        L           I N     + 
Sbjct: 265 TRFALEQTTDAIFWTDSEGNFIDVNQSACNSLGYRREDLLKLKVTDIDALITNQIDWKAH 324

Query: 490 YYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           + N      L F +I  +   E   ++ T   +    +EY++             N+   
Sbjct: 325 WKNLKTSAYLSFESIHRNISGEEIPVEITANYMQCDNMEYNVA---------IARNIHLR 375

Query: 549 VRAERAL-------TEKNEALRKADEIKNSFVQHVS 577
            +AE+ L           +++   ++  +    ++S
Sbjct: 376 KKAEKQLKFTSFSVEHTADSVLWINQSGSIIAANMS 411


>gi|32400386|dbj|BAC78682.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 156/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVDVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 969


>gi|328911399|gb|AEB62995.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 739

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 139/782 (17%), Positives = 295/782 (37%), Gaps = 80/782 (10%)

Query: 39  IPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV------WDGKDET 92
           +   L ++ + SL +++         +   L +YH ++        +          +E 
Sbjct: 1   MAETLDLQTKESLKEQLKRMKEENDRLKSDLHRYHVIMNNTLDAIFICHKEMKIVQANEA 60

Query: 93  PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152
              + Q+     I ++  D L            +L+KA +K  K+G  +  V    +   
Sbjct: 61  AARMMQIEAESLINRSVLDFLY------SVPQEELNKAVKKFLKKGHLWKEVPIKLD--- 111

Query: 153 IKIEGRVSGSCAFLRILSLDG--------IYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
                  SG+  ++  L+ DG        +  +++   +  ++ S    +FK LFD    
Sbjct: 112 -------SGATKYIEFLAKDGIGEDYFFVVMRDISSKKILEREFSMKEQLFKDLFDRAVD 164

Query: 205 LVWHRDQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
            +   D+ G  + AN+S+ K+ E  +  +   ++    +    +  K +  +   +    
Sbjct: 165 GIVLFDKDGGFIDANLSFCKSFEIGQNELSHLSLRHFTEGENNKHLKEIWDTLGKKGKAK 224

Query: 264 ETVST-LEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQL----THTYEILHNLT 316
             +   L  G  K ++     N      ++I  D++++ ++  +L        EI  N  
Sbjct: 225 GELPVKLRSGEEKLFEFTITSNLISGFYMSIMRDITEKRSMELKLFKSEERFREIFENAM 284

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            AI I+  +  +   N S   ++E+ +  L        L  F+            K +K+
Sbjct: 285 DAIVIWSDDGRIAKANESACRIFELPMDKLVER----NLCSFIVD--------PQKKYKQ 332

Query: 377 NIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTL 432
                 K  E  ++  + + NGQ   +  TS      G  + +  N++ +  +E +    
Sbjct: 333 IKKKYEKYGEIREEMLFQMANGQYKELEFTSKRTILEGQHLTILRNVSDRKRMEKELRES 392

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                +  +   +G  +F    RI  +NP    +    +  L   T    +    S +  
Sbjct: 393 ELKFRKVFNGSMDGKVLFDNQFRIIDANPLASRILGMPDEELRAYT----VPDILSLFDI 448

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRA 551
           E+ G       +   D+E   L   L       LE+S    +     +  F +VT++   
Sbjct: 449 ENAGVPARKIDLEGMDNEIPFL---LSSSDSRKLEFSFKRNIIQNMNLAIFKDVTEAKEL 505

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L + +                +++E+R+P+T + GF  LL+    GS+  + S Y  
Sbjct: 506 EERLRKSDTLHVVG-----ELAAGIAHEIRNPMTALKGFIQLLQ----GSIEGEHSLYFN 556

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I++    + +++ + L LA   A    + Y    +  ++ +    +  + +  N++I +
Sbjct: 557 VITSELKRIESIITEFLILAKPQA----ILYEEKDVTQIMKDTADLLNAQANLVNVQIHL 612

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSI 730
              G +     +  +L Q+F  IL NA++    G  + +     D    + S+++ G+ +
Sbjct: 613 NLTGNIPPIYCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQPSDKDHILISLQDEGTGM 672

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ED  K +   F       + RG GLGL +    I  H G + + S +   T  +  +P 
Sbjct: 673 SEDKLKRLGEPFY----TTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLPI 728

Query: 791 KE 792
           ++
Sbjct: 729 RQ 730


>gi|298244389|ref|ZP_06968195.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551870|gb|EFH85735.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 745

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 103/633 (16%), Positives = 225/633 (35%), Gaps = 62/633 (9%)

Query: 186 KKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES----- 240
             L      ++ L +S    +      G I+  N           +  ++ IG       
Sbjct: 144 DALPQSEQRYRSLLESFTDGIVILTPEGLIIDINQ---HPLVVAQVSREEVIGRPMVDFP 200

Query: 241 ----RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS------FGEAG 290
                 + +++++  +  +S  E    E     +  + +   +V + +            
Sbjct: 201 TWKSAPVAQKQLRAAIARASGGETVHFEVRLYPQAEHYRDLALVIIPHHADNQRIEYLTC 260

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           + ++V++     ++      +L  L   + +   +    + NR + +   + +       
Sbjct: 261 VGLEVTERKQAEEEWRV---LLDVLPHFVWVMRPDGSPSYQNRRWRDYTTVAVE------ 311

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT---LHVIVTSN 407
            +  +  +    +    Q   +TW+    +  +S   ++    L  G+T      +    
Sbjct: 312 DDQGIDGWSHWIHPDDRQRVLETWQ----AAVQSGNPYEVQHRLLEGETGTYRWYLTRGV 367

Query: 408 PRG---GTIW----MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           PR    G IW       N+    ++ET      +     +D    G+ +   D  I  +N
Sbjct: 368 PRKDQQGVIWQWVRTCTNVDELKEVETALYQSRERMRTLMDSNIIGIFI-SRDDEIIEAN 426

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             F  +    +  L  G            +              T    E+   +   + 
Sbjct: 427 NTFLRMTGYSQEDLRQGNMDWFRMTHPDSFTRTQQAQQELTQHQTLLPYEK---EYVCKD 483

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            S   +    +  P   +      + +S R E  L             K +F+   S+EL
Sbjct: 484 GSRLPVLVCAVAFPFDPSQNICFVLDNSARKELELR------------KENFLSMASHEL 531

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++PLT I     L +   L     + +  +        +L  L+ ++LD++ + AG +  
Sbjct: 532 KTPLTAIKMRLQLARVRLLKQGLGEAATMLSRAEEPVHLLDRLIGELLDVSKLQAGKLDY 591

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            Y  + +  L+ E+ ++       + I   V+     G+ + D+ RL Q+F  ++SNA+ 
Sbjct: 592 LYEPVDMEALVYEIAETTQLMSTTHTI---VVHGSAPGTVIGDKGRLEQVFINLISNAIA 648

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGL 758
           +S   +TV +     +     SV++ G  IP+   + +F RF       QR   G+G+GL
Sbjct: 649 YSPDANTVDIDLHATSEAVTVSVRDYGIGIPQGQREKIFERFYRAFDLSQRAVPGLGMGL 708

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +I +  +  HGG +++ S +   +T    +P +
Sbjct: 709 TIAQEIVTQHGGTITVQSEEGKGSTFQVTLPLE 741



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 136/391 (34%), Gaps = 54/391 (13%)

Query: 70  SKYHSLLTE-NNCLTIVWDGK-----DETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHH 123
            +Y SLL    + + I+         ++ P ++ Q+ +   I +   D   F  W     
Sbjct: 151 QRYRSLLESFTDGIVILTPEGLIIDINQHPLVVAQVSREEVIGRPMVD---FPTWKSAPV 207

Query: 124 YI-KLSKATEKLRKEGQS--FDLVA----ETQNDCAIKIEGRVSGSCAFLRILSLDGIYS 176
              +L  A  +    G++  F++      E   D A+ I    + +    RI  L  +  
Sbjct: 208 AQKQLRAAIARA-SGGETVHFEVRLYPQAEHYRDLALVIIPHHADNQ---RIEYLTCVGL 263

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E+ E     ++       ++VL D L   VW     G   + N  ++  T       Q  
Sbjct: 264 EVTERKQAEEE-------WRVLLDVLPHFVWVMRPDGSPSYQNRRWRDYTTVAVEDDQGI 316

Query: 237 IGESRKLFKEEIKK-----RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI 291
            G S  +  ++ ++     +    S         +   E G  + Y    V     +  I
Sbjct: 317 DGWSHWIHPDDRQRVLETWQAAVQSGNPYEVQHRLLEGETGTYRWYLTRGVPRKDQQGVI 376

Query: 292 ------AIDVSKEITVNDQLTHTYEILHNL--TVAIAIF-DQNRYLQFHNRSFVELWEID 342
                   +V +   V   L  + E +  L  +  I IF  ++  +   N +F+ +    
Sbjct: 377 WQWVRTCTNVDELKEVETALYQSRERMRTLMDSNIIGIFISRDDEIIEANNTFLRMTGYS 436

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              L         +++ R  +  P+        +   + +++   ++  +   +G  L V
Sbjct: 437 QEDLRQGN-----MDWFRMTH--PDSFTRTQQAQQELTQHQTLLPYEKEYVCKDGSRLPV 489

Query: 403 IVTS-----NPRGGTIWMFENLTVQVDLETK 428
           +V +     +P     ++ +N + + +LE +
Sbjct: 490 LVCAVAFPFDPSQNICFVLDN-SARKELELR 519



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 89/290 (30%), Gaps = 27/290 (9%)

Query: 285 SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             G A  ++D S  ++          +L  L+  +   D +  + + +     +      
Sbjct: 14  EIGNAMCSVDASVGVSPTS-HPQLTSLLETLSDTLIFLDPSATIYYASTRAAAMLGTSKQ 72

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVI 403
            L              +  +    L      + + +   + E+   T+  P  Q  L V 
Sbjct: 73  KLQGG-----------TLWQGAPHLVGTALYQAVTTAIHTQESLAITYRCPITQNWLRVR 121

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           +     GG +  F+     V L        +     ++  ++G+ +  P+G I   N   
Sbjct: 122 LLPT-HGGVLLFFQKGKEPVRLSDALPQSEQRYRSLLESFTDGIVILTPEGLIIDINQ-- 178

Query: 464 RSLWKTEENRLSPGTHI-RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                    ++S    I R +    +          L AAI  +   E    +  L   +
Sbjct: 179 ---HPLVVAQVSREEVIGRPMVDFPTWKSAPVAQKQLRAAIARASGGETVHFEVRLYPQA 235

Query: 523 DSVLEYSIIPLPN-------AQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           +   + +++ +P+              + VT+  +AE       + L   
Sbjct: 236 EHYRDLALVIIPHHADNQRIEYLTCVGLEVTERKQAEEEWRVLLDVLPHF 285


>gi|296535743|ref|ZP_06897908.1| cytoplasmic sensor hybrid histidine kinase [Roseomonas cervicalis
           ATCC 49957]
 gi|296263931|gb|EFH10391.1| cytoplasmic sensor hybrid histidine kinase [Roseomonas cervicalis
           ATCC 49957]
          Length = 689

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 152/379 (40%), Gaps = 12/379 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +  +E +      +    +D +S+G  ++  + R+   N  ++  ++     + PG H  
Sbjct: 312 RERIEAERTRWRAMLENALDSMSDGFVMWDANDRLVACNARYKDFYQVSAPFIEPGAHFD 371

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLPNAQTM 539
           +I              +   A +       +     +E L      +  +    P   T+
Sbjct: 372 DIMREGFYRGQYPQAGEDLDAFLAEMRRWHRGDNPPMERLLPDGRWVLITERATPGGGTV 431

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
               ++T+  RA + L    +A   A E K+ F+  +S+ELR+PL  I+GF  +L     
Sbjct: 432 GIRTDITELKRAMQELAAARDAAAAAGEAKSQFLARMSHELRTPLNGILGFAQVLLNDPR 491

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L   Q + +  +  +S  LL LVN +LDL+ + AG ++L      L  LL      +A
Sbjct: 492 --LAPDQREQLRVLHEASRHLLELVNGLLDLSKIAAGKLELQPQPTALAPLLERSAALLA 549

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DN 716
            ++   +++  +     L     AD  RL Q+   +LSNA+ F+  G  V L+A    D 
Sbjct: 550 PEVQRKSLQFALDLAPDLPPAVAADATRLRQLLLNLLSNAVKFTPHGGRVTLRARTLPDG 609

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-----GVGLGLSIVESFINLHGGH 771
                 V++ G  +P +    +F  FV  A           G GLGLSI      L GG 
Sbjct: 610 PGLRLEVEDTGPGVPAEQRHLLFRDFVQLASPVAMPHEIGIGTGLGLSIAAQLAELMGGR 669

Query: 772 VSISSSDEGVTTINCRIPS 790
           +   +     +     +P 
Sbjct: 670 IGYLAGPVRGSVFWVELPL 688



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E             L +++    ++D N  L   N  + + +++   F+      D+++ 
Sbjct: 316 EAERTRWRAMLENALDSMSDGFVMWDANDRLVACNARYKDFYQVSAPFIEPGAHFDDIMR 375

Query: 358 FLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
                 + P+   +   +   +   ++      +   LP+G+ + +   + P GGT+ + 
Sbjct: 376 EGFYRGQYPQAGEDLDAFLAEMRRWHRGDNPPME-RLLPDGRWVLITERATPGGGTVGIR 434

Query: 417 ENLTVQVDLETKY 429
            ++T       + 
Sbjct: 435 TDITELKRAMQEL 447


>gi|330888167|gb|EGH20828.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 645

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 118/252 (46%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++    ++Q
Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TAEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 302 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRE 361

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFS 722
           + +++         +   D  R+ QI   ++ NA+ F+ +G   ++   A  DN    F+
Sbjct: 362 LLLELHIQPGLDTVTVTGDPTRIRQILVNLIGNALKFTEQGKVSVVAQWAMLDNDQLHFT 421

Query: 723 --VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V ++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S +
Sbjct: 422 CAVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQE 481

Query: 779 EGVTTINCRIPS 790
              +    +IP 
Sbjct: 482 GSGSVFTLQIPL 493


>gi|262401680|ref|ZP_06078246.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
 gi|262352097|gb|EEZ01227.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
          Length = 1112

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 12/292 (4%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           A I T   DE   L  + E +  S+ E         + +L      +       + ++N+
Sbjct: 384 AMINTERKDEIGRLAVSFERMQRSIRE---------KILLIKSQNKELENNLLIIRKQND 434

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G L +     ++ I  S   L
Sbjct: 435 ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIIINSGQRL 494

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV+D+LD   +  G + +    + L+     V +     + +  +RI      +    
Sbjct: 495 ATLVDDLLDYHKMRYGALDIQKCAVDLSSATRLVLELSHHLLGKKMLRIINQVPEQAVWV 554

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD QRL Q+   ++ NA+ ++S+G  +++     +      V + G  IP D  + +F 
Sbjct: 555 SADPQRLEQVLYNLIGNAIKYTSEG-KIVISTTYMDDKIRVQVVDTGQGIPADQLEQIFE 613

Query: 741 RFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +  +      R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 614 PLIQASRDASRYRQGAGLGLSITRQLIELMGGTLYVSSQPMVGTTFSFTLPL 665


>gi|66044540|ref|YP_234381.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255247|gb|AAY36343.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1209

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 157/370 (42%), Gaps = 9/370 (2%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATC 487
            N  +  +   +D +   + V    GR+   N ++   L  + E          N+    
Sbjct: 576 LNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 635

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 +D  +L       F D    L G    +    + +          +  ++++T+
Sbjct: 636 LAEQMHTDYLNLLENHQPVFSDRTIELPGKRMDVWQWTVPFFAADGQLQGLLGGWIDITE 695

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  + L+  +   L +  S
Sbjct: 696 RKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLE-LECEQALRLGTMPS 754

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L + V +  + +  E  +
Sbjct: 755 QGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQAREKGV 814

Query: 668 RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFS 722
            +++    +  G +  D  RL Q+   +L NA+ F+ +G+ V+       + ++      
Sbjct: 815 ELRLEFSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVRLDVTSDSPESTRVRIG 874

Query: 723 VKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           ++++G  I     + VF  F            G GLGLSI    + L  G +S+ S    
Sbjct: 875 IQDSGEGIDPQRQQQVFQPFTQANDDTAAHYGGSGLGLSITRQLVELMRGDISLHSEPGK 934

Query: 781 VTTINCRIPS 790
            T +   +P 
Sbjct: 935 GTLVTIDLPL 944



 Score = 45.3 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +     ++L++ ++    L D +   ++ RD  G ++  N SY++
Sbjct: 553 LVSLTWSSRLKVQIRQRQRAQRQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQ 612

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                 L    + ++M +         +      +    G        
Sbjct: 613 SLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELPGKRMDVWQW 672

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL     +      A + F
Sbjct: 673 TVPFFAADGQLQGLLGGWIDITERKQLEQQLQEATRLAAQANEAKSAF 720



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 7/142 (4%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFL 359
           +NDQL   + +L  +   I + D    L   NRS+ +   I    +     ++  L+   
Sbjct: 576 LNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 635

Query: 360 RSANKLPEQLNWKTWKENIFS--VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            +     + LN     + +FS    +      D W      T+          G +  + 
Sbjct: 636 LAEQMHTDYLNLLENHQPVFSDRTIELPGKRMDVWQW----TVPFFAADGQLQGLLGGWI 691

Query: 418 NLTVQVDLETKYNTLVKVQGET 439
           ++T +  LE +     ++  + 
Sbjct: 692 DITERKQLEQQLQEATRLAAQA 713


>gi|330951694|gb|EGH51954.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae Cit 7]
          Length = 645

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 121/253 (47%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+++     +Q
Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTQM---THEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 302 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRK 361

Query: 667 IRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           + +++     L +   + D  R+ QI   ++ NA+ F+ +G  V + A     D+    F
Sbjct: 362 LLLELHIQPALEAINVIGDPTRIRQILVNLIGNALKFTEQG-KVCVDARWAMLDDERLHF 420

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V+++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S+
Sbjct: 421 TCAVQDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESA 480

Query: 778 DEGVTTINCRIPS 790
           +   +    +IP 
Sbjct: 481 EGSGSLFTLQIPL 493


>gi|317473351|ref|ZP_07932646.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316899187|gb|EFV21206.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 852

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 152/375 (40%), Gaps = 37/375 (9%)

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD--LFAAIITS 506
           +  PDG   + NP        +  +    +  + +++  S    ++   D   ++A+I  
Sbjct: 200 IIRPDGTFVIRNPNTELWGYFDLLQKQHKSAEKTLSSDNSLREFDTALKDNKEYSAVIKG 259

Query: 507 FDDERKSLQGTL--------ELLSDSVLEYSIIPLPNAQTM--------------LTFVN 544
             ++R+     L         ++  S+L+ +I  L   + +                F  
Sbjct: 260 SKEDRQIYSMPLPYSEWHLITVMPYSILDETINSLSFQRLVITLLACVSILISLVWIFFR 319

Query: 545 VTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                R + + L +  +   KA + K+ F+ ++S+++R+P+  I G T +   +      
Sbjct: 320 YFFITRVQLQELDKAQQKALKASKAKSEFLANMSHDIRTPMNAITGMTAI--ATAHIDDP 377

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    +  I+ SS  LL L+ND+LD++ +++G + L    I L ++++ +   +  +  
Sbjct: 378 KQVKNCLRKIALSSRHLLGLINDVLDMSKIESGKLTLTAEQISLREVVDGIVSIMQPQTK 437

Query: 664 ENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----- 717
                  V  +         D  RL QI   +LSNA  ++ +  ++ L  + +N      
Sbjct: 438 AKQQSFDVHIENIFTENVWCDGIRLNQILLNLLSNATKYTPEKGSIRLFISEENSPRGED 497

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                 +V++NG  +  +  K ++  +        R   G GLG++I +  ++   G + 
Sbjct: 498 YVRLHINVRDNGIGMSPEFLKKIYQSYSRADGTRTRKTEGAGLGMAITKYIVDAMDGTID 557

Query: 774 ISSSDEGVTTINCRI 788
           + S     T  + ++
Sbjct: 558 VQSEPNKGTEFHIKL 572


>gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
 gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
          Length = 1390

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEY 612
           A   + E L + D  K +F  ++S+E R+PLT I+G   ++L+TS+   L+ +  + +E 
Sbjct: 337 AQQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSE---LDVRVREELEL 393

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              +   L  LVN +LD + + AG M+  +  + L  +  E+     + +    +   V 
Sbjct: 394 AHRNGLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAGLEFTVD 453

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                     DR    ++   +LSNA+ F+ +G+ V ++   D+G  + +V + G  IPE
Sbjct: 454 CPPLAEPVYVDRDMWEKVVLNLLSNALKFTREGA-VTVRVTADDGVAVVTVADTGVGIPE 512

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F RF            G G+GL++V+  I LHGG +   S + G TT   ++P
Sbjct: 513 AEMPRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGGGTTFTIQMP 571


>gi|37521423|ref|NP_924800.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
 gi|35212420|dbj|BAC89795.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
          Length = 1241

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 96/527 (18%), Positives = 187/527 (35%), Gaps = 60/527 (11%)

Query: 297  KEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +    N +L      L NL     + I + D    ++       EL     A        
Sbjct: 728  ELQRRNRELDRLGNDLQNLLASTRLPIVMLDSELRIRRFTPQAGELLHFVSA-------- 779

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS--NPRG 410
                +  R    +  +L+     E +  V  S   H        G    + +       G
Sbjct: 780  ----DVGRPVRDINHRLSVPDLPERVLEVIASRRIHIQEVQDRGGHWHELCIRPYHTLDG 835

Query: 411  ---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
               G + +  ++        +           ++ + E + V   +     +N AF  L+
Sbjct: 836  ATEGAVLVLVDIDQSKRAVEEVKAARDYAEAIVETVGEPLIVLDAELSAVTANRAFYELF 895

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVL 526
            +T  +++      R++       +N     +    ++      +   +    E L   +L
Sbjct: 896  ETHPDQIEG----RSLFEVSGGQWNLPQLREALEGVLQGDGRVQDFEVDRDFERLGRKIL 951

Query: 527  EYSIIPLP-NAQTMLTFVNVTDSVRAERALTEKNEAL-----------RKADEIKNSFVQ 574
              +   +P  A      +     V A R L  +   L             A+  K+ F+ 
Sbjct: 952  LLNARHMPFYAGGPRQILLSVSDVTARRLLEGERSELLAQSEAARRDAEAANRSKDEFLA 1011

Query: 575  HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             +S+ELR+PL  IIGF+ LL+  K     ++ +Q +E I     +   L++D+LD++ + 
Sbjct: 1012 TLSHELRTPLNPIIGFSQLLRRGKCDP--AQTAQALEVIERCGKLQAQLIDDMLDISRII 1069

Query: 635  AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            +G + +    I L  ++    +++       +IRI+ +        +AD  R+ Q+   +
Sbjct: 1070 SGKLHVVMRRIDLVPVVGAAVEAVDAIGRAKSIRIETVCAPAPP-VMADSTRMQQVVWNL 1128

Query: 695  LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--- 751
            L+NA+ F+ +G  V ++          +V + G  I  +    +F+RF        R   
Sbjct: 1129 LTNAVKFTPEGGRVGVRLEGTAAGVRLTVSDTGMGIAPEFLPKMFDRFAQGDGSRTRTQG 1188

Query: 752  -------RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
                            V S I LHGG V   S+ EG  +     +P+
Sbjct: 1189 GLGLGLYL--------VRSLIELHGGTVDAHSAGEGRGSVFTVALPA 1227


>gi|324991493|gb|EGC23426.1| sensor histidine kinase VicK [Streptococcus sanguinis SK353]
          Length = 449

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 28/382 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I   N         + + +
Sbjct: 75  INDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I ++ +    Y    D  DL   +     D   S     E LS  V  ++++   
Sbjct: 135 QN-MSILDLLSISDEY----DLRDLITNVPELTID---SQDENGEYLSLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   ++            +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQDKE-----------ERERRLFVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +V+     +  ++ +V D+L L+ +D     L          +  +
Sbjct: 235 DEGALS--EPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSHLEVELTNFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                    +       I             D  +L Q+   I++NA+ +S  G T+ + 
Sbjct: 293 LNRFDKIKNQDETKKYEIIRDYPITPILVEIDTNKLTQVIDNIMNNAIKYSPDGGTITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  H 
Sbjct: 353 IKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHQ 412

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           G +   S     +T    +P +
Sbjct: 413 GFIWAKSEYGVGSTFTIVLPYE 434


>gi|316931702|ref|YP_004106684.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315599416|gb|ADU41951.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 640

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 9/230 (3%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              ++  +   S+E+R+PL  IIG + LL  +   SL ++Q+ Y   +  S   LL L +
Sbjct: 124 SRARSRLLAMASHEIRTPLNGIIGMSQLLLDT---SLTAEQTTYARAVKTSGEALLALTD 180

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           ++LD A V+AG ++L+    VL +L+ +V + +A +     + I    D +L +  + D 
Sbjct: 181 ELLDNARVEAGKIELDRCPFVLGNLIEDVVELLAPRAQARGLEIAADIDERLPASLIGDA 240

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF 742
            RL Q+   +  NA+ F+  G  V L A   +   +F   V++ G  I  D    +F  F
Sbjct: 241 ARLRQVLLNLCGNAIKFTEAGG-VTLTAEPGDQAAEFRLIVRDTGIGIAPDAQARIFREF 299

Query: 743 VSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                       G GLGLSI +  +   GG +++ S+    TT    +P 
Sbjct: 300 EQADADIARHFGGTGLGLSISDRIVAAMGGRIALDSTPGQGTTFTVTLPL 349


>gi|257486369|ref|ZP_05640410.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330987453|gb|EGH85556.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331010647|gb|EGH90703.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 645

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 118/252 (46%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++    ++Q
Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TAEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 302 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRE 361

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFS 722
           + +++         +   D  R+ QI   ++ NA+ F+ +G   ++   A  DN    F+
Sbjct: 362 LLLELHIQPGLDTVTVTGDPTRIRQILVNLIGNALKFTEQGKVSVVAQWAMLDNDQLHFT 421

Query: 723 --VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V ++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S +
Sbjct: 422 CAVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQE 481

Query: 779 EGVTTINCRIPS 790
              +    +IP 
Sbjct: 482 GSGSVFTLQIPL 493


>gi|228923427|ref|ZP_04086713.1| hypothetical protein bthur0011_44040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836212|gb|EEM81567.1| hypothetical protein bthur0011_44040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 484

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADWEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEVDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGKIWAESELGKGTSIFFSL 476


>gi|167745965|ref|ZP_02418092.1| hypothetical protein ANACAC_00660 [Anaerostipes caccae DSM 14662]
 gi|167654480|gb|EDR98609.1| hypothetical protein ANACAC_00660 [Anaerostipes caccae DSM 14662]
          Length = 852

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 157/387 (40%), Gaps = 39/387 (10%)

Query: 439 TIDHLSEGVA--VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           ++++  + +   +  PDG   + NP        +  +    +  + +++  S    ++  
Sbjct: 188 SLENEGDLIYYHIIRPDGTFVIRNPNTELWGYFDLLQKQHKSAEKTLSSDNSLREFDTAL 247

Query: 497 WD--LFAAIITSFDDERKSLQGTL--------ELLSDSVLEYSIIPLPNAQTM------- 539
            D   ++A+I    ++R+     L         ++  S+L+ +I  L   + +       
Sbjct: 248 KDNKEYSAVIKGSKEDRQIYSMPLPYSEWHLITVMPYSILDETINSLSFQRLVITLLACV 307

Query: 540 -------LTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                    F       R + + L +  +   KA + K+ F+ ++S+++R+P+  I G T
Sbjct: 308 SILISLVWIFFRYFFITRVQLQELDKAQQKALKASKAKSEFLANMSHDIRTPMNAITGMT 367

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +   +       +    +  I+ SS  LL L+ND+LD++ +++G + L    I L +++
Sbjct: 368 AI--ATAHIDDPKQVKNCLRKIALSSRHLLGLINDVLDMSKIESGKLTLTAEQISLREVV 425

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + +   +  +         V  +         D  RL QI   +LSNA  ++ +  ++ L
Sbjct: 426 DGIVSIMQPQTKAKQQSFDVHIENIFTENVWCDGVRLNQILLNLLSNATKYTPEKGSIRL 485

Query: 711 KAARDNG-------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
               +N            +V++NG  +  +  K ++  +        R   G GLG++I 
Sbjct: 486 FICEENSPRGEDYVRLHINVRDNGIGMSPEFLKKIYQSYSRADGTRTRKTEGAGLGMAIT 545

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +  ++   G + + S     T  + ++
Sbjct: 546 KYIVDAMDGTIDVQSEPNKGTEFHIKL 572


>gi|115379534|ref|ZP_01466626.1| sensory box histidine kinase/response regulator [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363462|gb|EAU62605.1| sensory box histidine kinase/response regulator [Stigmatella
           aurantiaca DW4/3-1]
          Length = 603

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 12/254 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++TD    ER L    +   +A   K  F+  +S+E+R+P+  IIG ++LL  + L 
Sbjct: 47  TLFDITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLP 106

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L     +Y   + +SS  LL L+N ILD   ++AG + L      L  LL+ +  +++ 
Sbjct: 107 PL---YQEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSV 163

Query: 661 KMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
           K  E  + I+V  D ++  + + D  +L Q+ + +L NA+ F+ +G+ V L   R +GD 
Sbjct: 164 KAEEKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQGA-VTLAVRRLHGDA 222

Query: 720 I-----FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHV 772
                 F V + G  IP+D    +F  F   ++    +  G GLGL+I +  + LHG  +
Sbjct: 223 EGVFLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKM 282

Query: 773 SISSSDEGVTTINC 786
            + S     ++   
Sbjct: 283 RVESVPGEGSSFAF 296


>gi|225026715|ref|ZP_03715907.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353]
 gi|224955976|gb|EEG37185.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353]
          Length = 983

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 137/263 (52%), Gaps = 11/263 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +L   + T   +  +AL+E   A   A++ K++F+ ++S+++R+P+  IIGFT L  ++
Sbjct: 440 YILVMSDRTSDWKMNQALSEAVHAAETANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSN 499

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  +   Y+  I +SS  LL+L+NDILD++ +++G + L  + + L+D+L+++K  
Sbjct: 500 IDNQ--ERVQDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTI 557

Query: 658 IATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           I+ ++H   + + +   D        D+ RL Q+   +LSNA+ F+  G TV ++  +  
Sbjct: 558 ISGQIHAKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRLKQYP 617

Query: 717 GDF------IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLH 768
                       VK+ G  + ++  + +F+ F         + +G GLG++I ++ +++ 
Sbjct: 618 KAVKGSKLYEIRVKDTGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMM 677

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GG + + +     T     +P +
Sbjct: 678 GGTIEVQTEQGKGTEFIVCLPLR 700


>gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
 gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
          Length = 793

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 12/252 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +  R    L ++      A E K+ F+  +S+E+R+P+  ++G  ++L  ++   L  +
Sbjct: 248 QEKKRIAERLQQEKARAEAATETKSRFLATMSHEIRTPINGVLGMAEVLNETR---LTPE 304

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q+     I ASS  LL +VNDILD + ++AG  ++      L D++ +V   ++      
Sbjct: 305 QTSCTSTILASSEALLRIVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSATAK 364

Query: 666 NIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIF 721
            + I +         F+ D  R+ QI   ++ NA+ F+ +G  + +    D         
Sbjct: 365 GVEICIDIPEHTPPEFIGDSGRVRQILMNLVGNAVKFTLEGH-ISITLNYDARHNIPLCI 423

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  IPED    +F+ F        RR  G GLGL+I        GG + + S   
Sbjct: 424 DVRDTGVGIPEDSIGQIFHAFEQVESTTARRFEGTGLGLAISSRLTQAMGGRIDVVSQAG 483

Query: 780 GVTTINC--RIP 789
             +       +P
Sbjct: 484 KGSCFTVCLTLP 495


>gi|171913995|ref|ZP_02929465.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 702

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 124/253 (49%), Gaps = 14/253 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E  L        ++++ K+ F+  +S+E+R+P+  I+GF++LL        + ++ ++
Sbjct: 194 RREERLAAAKVRAEQSEKEKSIFLATMSHEIRTPMNAILGFSELLANEAQ---SEQEKRH 250

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I  S   LL ++NDILDL+ ++AG+++++     + D++  V+Q  A +  E  + +
Sbjct: 251 AETILVSGRALLQIINDILDLSKIEAGMLQISSDPCDVRDVVRFVQQMFARQAIERGLEL 310

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-------FIF 721
                  +  S + D  RL QI   ++ N++ F+ +G  V ++   + G           
Sbjct: 311 HAEISPSVPNSLLIDSIRLRQILVNVVGNSLKFTERGG-VTVRLHGERGTEHRSRMLLTV 369

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V++ G  IP +M   VF  FV      + Q RG GLGL+IV+   +L GG + + S   
Sbjct: 370 EVEDTGIGIPREMQAEVFRPFVQVNGGTKSQTRGTGLGLAIVKRLSDLMGGRILLDSQPG 429

Query: 780 GVTTINCRIPSKE 792
             T      P  E
Sbjct: 430 RGTLFRFEFPHVE 442


>gi|167630855|ref|YP_001681354.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167593595|gb|ABZ85343.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
          Length = 558

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 6/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +KN+ L +  +       +VS++LR+PL  I G+ + L+     + + +  Q  E 
Sbjct: 313 RQLEDKNDQLARGMQSMRDLAANVSHDLRTPLFLIQGYAEALRDDMAKTPDDR-RQMAEI 371

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  +  LV D+L LA +++G  +L    +    L+  V + ++    E  IR+  +
Sbjct: 372 ILEETDRMQRLVQDMLQLAQLESGYFELKREAVDPEALIYGVARKLSGAADERQIRLICL 431

Query: 673 S---DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +   D  L +  AD  RL Q    ++ NA+  +  G  V+L          FSV ++G  
Sbjct: 432 AYPGDAALPAIHADPDRLTQALINLVDNALRHTPAGGEVVLGLTAQAQSVRFSVDDSGPG 491

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + E     ++ RF        R+  G GLGLSIV++ +  HGG V   +   G  +    
Sbjct: 492 LAEADLDRIWERFYRGEKSRSRKTPGTGLGLSIVKAIVESHGGSVGAENRTGGGASFFFT 551

Query: 788 IPSK 791
           IP K
Sbjct: 552 IPIK 555


>gi|167590337|ref|ZP_02382725.1| PAS [Burkholderia ubonensis Bu]
          Length = 1361

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/513 (16%), Positives = 196/513 (38%), Gaps = 31/513 (6%)

Query: 296  SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            ++  +  ++     + L NL     +     D+N  ++ +     +++ I  +       
Sbjct: 723  AELKSKVEETGKINDDLQNLIAANDIGTIFVDRNICIKRYTPRATDVFSIIPS------- 775

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-----HVIVTS 406
                 +  RS   +  +L +    ++    + S    +      +G+           T 
Sbjct: 776  -----DIGRSLLDITHRLEYDKLADDAAEAFDSLRLIERELKSNDGRWYLARFVPYRTTE 830

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRS 465
            +   G +  F ++T +   E +     +      +   +  +  F  DG I   N     
Sbjct: 831  DRIDGAVLSFIDITDRRRAEDRLREGERRMRIVAEGTKDYAIITFDDDGVITSWNAGAER 890

Query: 466  LWKTEE-NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++   E   +     + +     + +  E +  +  A   T  +   +   GT    +  
Sbjct: 891  IFGYAEAEMIGQSADVLSTDEDRAGHVAEREFAEARANGRTEEERWHRRKDGT-RFFASG 949

Query: 525  VLEYSIIP-----LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            VL     P        A+ +  F     + R  +    +    + A+  ++ F+  VS+E
Sbjct: 950  VLSRLDEPGVSGFAKIARDLGEFAQAAKAGRDAQIEQLRVTGEQDAERRRDEFLAVVSHE 1009

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            L++PL  I    +L+  S     +   S+  E I  +      +++D+LD++ V  G + 
Sbjct: 1010 LKNPLNLISASAELIARSPEARQSLNISRAAETIRRTVIGQAQIIDDLLDVSRVRTGKLS 1069

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            +  + + + +++  V  ++  + ++  + ++V         +AD  R+ Q+   ++SNA+
Sbjct: 1070 VVRTPVDMREIVRRVASAVQDESNQRGLALQVAITESPVIILADLTRIEQVVWNLISNAL 1129

Query: 700  DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGL 758
             F+S G   +      + + +  V + GS I   +   +F+ F  +     +R G+G+GL
Sbjct: 1130 KFTSHGRVDVSLQVNGHAEAVLRVADTGSGIEPALLPHIFDMFRQSRDPAARRAGLGIGL 1189

Query: 759  SIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            ++V   +NLHGG V   S       T    +P+
Sbjct: 1190 ALVRELVNLHGGTVRAESDGAGRGATFTVTLPT 1222


>gi|115523391|ref|YP_780302.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115517338|gb|ABJ05322.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 878

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 155/385 (40%), Gaps = 17/385 (4%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           GT++M +NL  +++LE K   +  +  +   + S+ +     DGR+      F  + +  
Sbjct: 220 GTLFM-DNLRSKLELERKTEIISLLLKDFQANASDWLWQTDVDGRLVSIPERFVEVSQL- 277

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              L  G  I ++ A  S   ++        A++   +         +      +   + 
Sbjct: 278 PLALLRGAAIADVLAMLSP--DDRAAVATVTALMAKREPLHDVAVHVVVAGKPRLWSMTA 335

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            P+ +                ER    + +     +  K+ F+  +S+E+R+P+  ++G 
Sbjct: 336 KPVLDPDGRFAGYRGVGRDVTER---WRADQAEAENRAKSEFLAMMSHEIRTPMNGVLGL 392

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            ++L  +K   L+ +Q   V  I  S   L  ++NDILDL+ ++AG  +        + L
Sbjct: 393 ANVLLETK---LDPEQHHAVATIRDSGDNLQRILNDILDLSKLEAGRFQFEMVDFSPHTL 449

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +  V   I        + +++     L  +   D  R+ Q+   + +NA+ F+ +G   I
Sbjct: 450 IGAVSAVIGPMAKNKGLSVEIDVAKDLPETLTGDAARIRQVLLNLAANAVKFTERGRIAI 509

Query: 710 LKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
                D  D      + V + G  I +D   S+F+ F        RR  G GLGL+I   
Sbjct: 510 SVLCSDRQDDSVSVEWRVVDTGIGIADDRVGSLFSDFAQADVTINRRFGGTGLGLAISRR 569

Query: 764 FINLHGGHVSISSSDEGVTTINCRI 788
            +   GG + +SS     +T   R+
Sbjct: 570 IVEQMGGEIGVSSVHGDGSTFYFRL 594


>gi|329930360|ref|ZP_08283949.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328935086|gb|EGG31572.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 683

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 117/268 (43%), Gaps = 5/268 (1%)

Query: 529 SIIPLPNAQTMLTFVN--VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +I+PL     ++T          RA   + + +  L   D +K+ F+ + S+ELR+PL  
Sbjct: 393 AIVPLEMLLFVVTQAMLLAQRFSRAFTDVDQLSRRLLTLDGLKDEFMANTSHELRTPLHG 452

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+     L     GS++ +QS+ +  I ++   L  LVNDILD + +  G + L    + 
Sbjct: 453 IVNIAQSLMDGSSGSVSDRQSRELSMIVSTGKRLSTLVNDILDFSKLKNGEIVLKRQPVD 512

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  +   V + +        + +K      L     D  RL QI   +L NA+ F+  G 
Sbjct: 513 LKAVTQSVLEVVTHLAAGKPLSLKQEWPDNLPWLDTDEDRLRQILYNLLGNAVKFTETG- 571

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESF 764
           TV + A   NG    SV + G  I  +    VF  +     A   +  G G+GLSI +  
Sbjct: 572 TVQVTAHALNGHVRVSVTDTGIGISPERLIDVFKSYDQIGYASDREYSGTGIGLSITKKL 631

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSKE 792
           + L GG +   S     +  +  +PS +
Sbjct: 632 VELGGGEIWAESMPGAGSAFHFTLPSTQ 659


>gi|300723733|ref|YP_003713040.1| hybrid sensory histidine kinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297630257|emb|CBJ90908.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus nematophila
           ATCC 19061]
          Length = 930

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 89/384 (23%), Positives = 171/384 (44%), Gaps = 33/384 (8%)

Query: 413 IWMFEN--LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKT 469
           IW+FE        D   +     +   + +     G+++    DG   LSN     L   
Sbjct: 313 IWLFERKMFAPAEDNAIRLEEHEQFNHKIVASAPVGISILRVSDGVSILSN----ELAHN 368

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
               L+     R +   C +  +  D       ++TS ++    LQ +         E +
Sbjct: 369 YTQMLTYEDQKRIVDIICDKTSSYID-------VVTSNNNH---LQISFVHSRYRNEEVA 418

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I  L +  T          V+ E++L E   A  +A++ K+ F+  VS+ELR+PL  IIG
Sbjct: 419 ICVLIDVST---------RVKMEKSLQEMATAAEQANQAKSMFLATVSHELRTPLYGIIG 469

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +L+++     L  + ++ +  ++ SS++LL +++DILD + +++  +K+        +
Sbjct: 470 NLELIQSHL---LPPESTRLLATMNNSSSLLLKIISDILDFSKIESKQLKIEPKDFSCKE 526

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +++ V  +    + +  + +    +  + + +  D  RL QI S +L+NA+ F++ G  V
Sbjct: 527 VISHVISNYLPLIAKKALGLYCYIEPNVPNIIRNDPVRLQQIISNLLNNAIKFTASG-CV 585

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFIN 766
           +++    +G   FS+K+ G  I + +   +F  F           +G GLGL+I E  IN
Sbjct: 586 VIEIVSKHGYLYFSIKDTGLGIEDKLQFQLFEPFFQISANKESSPQGTGLGLAICEKLIN 645

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           L  G +   S     +  + RIP 
Sbjct: 646 LMDGDIEFISQKYVGSIFSIRIPL 669


>gi|225180886|ref|ZP_03734334.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168367|gb|EEG77170.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 497

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 6/248 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +A     +     ++   ++ + V  VS+E R+PLT+I GF D +    +     +Q +
Sbjct: 244 NQAVEETNKTIHEQKRLQALRQNLVASVSHEFRAPLTSIQGFVDAMLEGFIR--EEEQEK 301

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+  I  ++  L  LVND++DLA++++G ++L Y  +    L  +   S+  +  E +I+
Sbjct: 302 YLRVILNNTLHLNRLVNDLVDLASIESGYVQLRYEDVDPYTLAEKALDSVYPQAQEKSIK 361

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--ARDNGDFIFSVKNN 726
           ++   +  L +   D  RL QI   +L NA+ ++     + L+A  + D    IF+VK+N
Sbjct: 362 LEYNYEEGLPAIRGDGDRLYQILINLLENAITYTPDEGRIALEAQLSDDKEKVIFTVKDN 421

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP      ++ RF        R  +G GLGL+IV   +++H G V++ S+    +  
Sbjct: 422 GQGIPLAEIPYIWERFYKVDKARNRANKGKGLGLAIVRELVHMHNGEVAVKSTPGEGSAF 481

Query: 785 NCRIPSKE 792
           +  IP +E
Sbjct: 482 SVIIPIEE 489


>gi|260776063|ref|ZP_05884958.1| hypothetical protein VIC_001447 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607286|gb|EEX33551.1| hypothetical protein VIC_001447 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 563

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 7/239 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E      +++     FV  +++ELR+PL  ++G  +LL  +   SL+ +Q   +  +S 
Sbjct: 192 QEARARAEESERATKEFVAMINHELRTPLNGLLGSAELLADT---SLDEEQRTLLTNLSH 248

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +   L +++NDILD + + AG+M+L  ST    +L N ++   A K  E  I+  + S  
Sbjct: 249 TGDFLRHIINDILDFSKISAGMMELIPSTFAWKELTNMLQGVFANKAQEKGIQFSIHSAP 308

Query: 676 KLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           ++ +F + D  R+ QI   ++ NA+ F+S GS V ++      +   SVK+ G  IPE  
Sbjct: 309 EVPNFLIGDFDRICQILINLVGNAIKFTSAGS-VQVEVFWQENNLHISVKDTGIGIPEGA 367

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +F+ FV      +R   G GLGL+I ++ I+L  G +S +S     T     IP K
Sbjct: 368 KAILFDPFVQADRTAKRNFEGTGLGLAICKNLIDLMKGEISFTSQTGVGTQFKLSIPLK 426


>gi|85711698|ref|ZP_01042755.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145]
 gi|85694558|gb|EAQ32499.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145]
          Length = 655

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 174/421 (41%), Gaps = 40/421 (9%)

Query: 395 PNGQTLHV----IVTSNPRGGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
            NG+ + V    I+  +   G   +F    ++T + +LE K  T        +D    G 
Sbjct: 104 KNGRHVWVSDTTIIKMDTDDGVPLLFGYLIDITERKELEIKLETERNRLQLLLDATRLGT 163

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
             + P   +   N  +  ++            I     + S   +  D   ++ A+    
Sbjct: 164 WEWNPQSNLTSFNDRWAQIFGWS------REEIEQSPYSWSSRLHPDDYDRVWRAVKDHL 217

Query: 508 DDERKSLQGTLELLSDS-----VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           D      +    +         VL+   +   +     T    T +   E+   E N   
Sbjct: 218 DGITPFYESQHRIRHRDGHYVYVLDRGRVIERDEHGKATRYAGTVTDVTEQKQAEIN--A 275

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           R+A   KN F+ ++S+E+R+PL  I+G   +L+ +   +L++ Q Q +  +  S   LL 
Sbjct: 276 RRAASAKNVFLANMSHEVRTPLHGILGLVSVLENT---ALDTHQHQLLMTVKESGDHLLQ 332

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
           ++ND+LDL   + G +KLN   + L  +L  ++      + E  ++  +     L     
Sbjct: 333 MLNDLLDLTRSEEGQLKLNKDVLELARILQHIESMYRAPIEEKGVKFIIHHSQVLPERIF 392

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----------ARDNGDFIFSVKNNGSSI 730
           +DR RL+QI + +L+NA+ F+ +G T++L              +  G+ +  V++ G+ I
Sbjct: 393 SDRARLIQILTNLLNNAVKFTEQG-TIMLSIDWSVDPATTTQTQAQGELLIKVRDTGAGI 451

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                + ++  F         ++ G GLGL+IV + + L  G + + S     T  + R+
Sbjct: 452 --RDTQRIWQLFEQEHQGLSKKQSGSGLGLAIVRNLVQLLDGEIEVDSEPNRGTCFSLRL 509

Query: 789 P 789
           P
Sbjct: 510 P 510


>gi|242280477|ref|YP_002992606.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123371|gb|ACS81067.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 791

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 10/247 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L +  +   KA + K+ F+  +S+E+R+P+  I+G  DLL  ++   L+ +Q  YVE 
Sbjct: 266 RELEKSKDKSEKASQFKSQFLAMISHEIRTPMNAILGMGDLLLGTE---LDPEQMGYVEI 322

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S  +LL ++NDILD   +++G ++L       +  +  V +S+A   H  +I +   
Sbjct: 323 FRGSGELLLKIINDILDFVQIESGQIELVPVPFDPSQDVQSVCKSVAHSAHARDIEVICD 382

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
            + G     V D  R+ Q+   I+SNA+ ++S G   V L A     D    +F+V++ G
Sbjct: 383 VAQGVPAQVVGDPVRVRQVLMNIVSNAVKYTSSGEVEVCLSAEESGEDFERLLFTVRDTG 442

Query: 728 SSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IPE   +S+F  FV        +  GVGLGL+       L  G +   S     +   
Sbjct: 443 IGIPEGQRESLFEGFVQADGLASREYGGVGLGLAAASRLAVLMDGEIRFESESGKGSIFY 502

Query: 786 CRIPSKE 792
             IP K+
Sbjct: 503 FSIPFKK 509


>gi|220920746|ref|YP_002496047.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219945352|gb|ACL55744.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 605

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 5/260 (1%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +    +V++  R    L        +AD +K+ F+  VS+ELR+PL  IIGF+++L 
Sbjct: 315 AAVVAVTRDVSEHHRHAAELDRARAEAERADAVKSRFLAVVSHELRTPLNAIIGFSEMLS 374

Query: 596 TSKLGSLN-SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                +L   +Q +Y   I +S   LL +VN +LDL  + +G          +  ++N  
Sbjct: 375 AEAGLTLPVERQREYAVIIQSSGRHLLEVVNALLDLTRIQSGSFDFAPEPFDIRAVVNGC 434

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  +  +  + +       L    AD +   Q+   +LSNA+ F+ +G  V +   +
Sbjct: 435 CDLMQLRADQVGVELLRDVPRDLPELTADPRACRQMLINLLSNAVKFTPRGGRVTVSVRQ 494

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS----NAHRGQRRGVGLGLSIVESFINLHGG 770
                  SV + G  I E     + + F       A+     G GLGLS+V   + LH G
Sbjct: 495 AYDRIELSVTDTGIGIAEADLPRLGDPFFQAGDAAAYARMHEGTGLGLSVVRGLVGLHDG 554

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +++ SS    T +   +P 
Sbjct: 555 EMTLESSVARGTRVVVALPL 574


>gi|163800705|ref|ZP_02194605.1| hypothetical protein 1103602000593_AND4_00543 [Vibrio sp. AND4]
 gi|159175054|gb|EDP59851.1| hypothetical protein AND4_00543 [Vibrio sp. AND4]
          Length = 567

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 132/260 (50%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  +   ++   S++ E  L ++ E    +++    FV  +++ELR+PL  ++G  DLL 
Sbjct: 175 SDLVHGVISRHSSLQREVKLRKRAE---ASEKATKEFVAMINHELRTPLNGVLGSADLLD 231

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +   +L+ +Q QY+  ++ S  +L  ++ND+LD + ++AG+M++        DL N + 
Sbjct: 232 KT---ALDGEQQQYLSNLTHSGDLLRVIINDLLDFSKMNAGMMEIINKVFAWKDLENALT 288

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              A K  E  I   +     +  F + D +R+ QI   ++ NA+ F++ G  V L+   
Sbjct: 289 GVFAAKAAEKRIHFSIDKKLGIPEFLIGDFERITQILVNLIGNAIKFTNLGGVV-LRVEW 347

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
            NG   F V++ G  IP    K++F+ FV      +R   G GLGL+I ++ ++L  G +
Sbjct: 348 QNGYANFEVEDTGIGIPLGAQKALFDPFVQADRSTKRSFEGSGLGLAICKNLVDLMEGEI 407

Query: 773 SISSSDEGVTTINCRIPSKE 792
           S  S     T    RIP K+
Sbjct: 408 SFVSEPRKGTIFKLRIPLKQ 427


>gi|167646752|ref|YP_001684415.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167349182|gb|ABZ71917.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 592

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K +F+  +S+E+R+PL  ++G   +++   L  L   Q + +E +  S   L  ++ND+L
Sbjct: 207 KTTFLATMSHEIRTPLNGVLGMLQVMQADGLSDL---QRERLEIVRKSGEGLTAILNDVL 263

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRL 687
           DL+ ++AG +++      L  LL     +++    E  +   + ++    G +  D  RL
Sbjct: 264 DLSKIEAGRLEIQTVAFDLPGLLVGCHHAVSVLAAEKGLSCTLTVASEARGLYHGDPLRL 323

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+   +LSNA+ F++ G T+ L A  +      +V + G  +  +    +F +F     
Sbjct: 324 RQVIGNLLSNAVKFTNSG-TIDLSARLNGDALEIAVSDTGVGVAPEDLGRLFGKFSQLDA 382

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              RR  G GLGL+I      L GG +S++S+    +T   R+P+
Sbjct: 383 SSTRRHGGTGLGLAICRDLCGLMGGGISVTSTVGQGSTFTVRLPA 427


>gi|159901168|ref|YP_001547415.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894207|gb|ABX07287.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 677

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 160/366 (43%), Gaps = 37/366 (10%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYN 492
                ++  ++G+ +  PD  +  +NP    L+  E   +    G+ I       SR  N
Sbjct: 336 RLQALLNSTTDGILMIDPDDVVLTANPMLGELFGWEWRNIIGEAGSDILARIKEQSRVVN 395

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSV 549
           E    +                   +E+L          PLP   N   ++  + V   +
Sbjct: 396 ELPNSE----------------TCEIEVLRPRTRYVRQEPLPVRNNFGNVIGTLIVFHDI 439

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E  L           +I+  ++  + ++LR+PLT II    +++    G +N +Q + 
Sbjct: 440 TEEYQLA----------QIREDYMGMLVHDLRAPLTAIINGMTMVRRGFAGPINDQQREL 489

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++  + SS  ++ ++N +LD++ ++AG + LN +     ++++   + +       +I I
Sbjct: 490 LDIANNSSQEMVGMINTLLDISKMEAGELVLNRAPCSAYEIVDRASERLINSARSVDISI 549

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKN 725
            +     L    AD+ ++++I   +L NA+ F+  G +V ++  +    +     +SV +
Sbjct: 550 NLDMALNLPIIDADQDKIVRILQNLLDNAIKFTPVGGSVTIRVRQLTDNEKQTICWSVID 609

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IPE     +F++FV  A  GQR+G GLGL+  +     HGG + + S +   +T +
Sbjct: 610 AGPGIPESYRAKIFDKFVQVA--GQRKGTGLGLAFAKLASEAHGGRIWVESVEGEGSTFS 667

Query: 786 CRIPSK 791
             IP +
Sbjct: 668 FTIPYE 673



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 10/140 (7%)

Query: 289 AGIAID-VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
            G+AID  +    V+        +L++ T  I + D +  +   N    EL+  +   + 
Sbjct: 317 VGVAIDNANLFHEVSQNRNRLQALLNSTTDGILMIDPDDVVLTANPMLGELFGWEWRNII 376

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
               +D L      +  + E  N +T       V +    +     LP      V     
Sbjct: 377 GEAGSDILARIKEQSRVVNELPNSET---CEIEVLRPRTRYVRQEPLP------VRNNFG 427

Query: 408 PRGGTIWMFENLTVQVDLET 427
              GT+ +F ++T +  L  
Sbjct: 428 NVIGTLIVFHDITEEYQLAQ 447


>gi|167646501|ref|YP_001684164.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
 gi|167348931|gb|ABZ71666.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
          Length = 554

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 7/245 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R   +L    E    A+  K  F+ ++S+E+R+PL  ++G   ++++    +L+ +Q + 
Sbjct: 299 RGRESLVVAKEQAEAANVAKTQFLANMSHEIRTPLNGVLGMAQIMES---DALSDRQRER 355

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  S   LL L+N ILD+A ++ G ++L      L  L++      +       I++
Sbjct: 356 LAVIEESGNALLALLNSILDMARLETGAIRLRREAFDLGALVDSSCAVFSGAAVSKGIKL 415

Query: 670 -KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            + ++   LG++V D  RL Q+   +++NA+ F+  G TV +          F V + G 
Sbjct: 416 CQALTPESLGAWVGDPLRLRQVLGNLVANAVKFTDSG-TVRVHVEESALGLRFEVSDTGI 474

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +       +F  F        R   G GLGL+I    + L GG + + S     +T   
Sbjct: 475 GVAPQDQLRLFKMFSQVDSSSTRSHEGSGLGLAICHDLVELMGGAIGMRSVPGEGSTFFF 534

Query: 787 RIPSK 791
            +P +
Sbjct: 535 DLPLQ 539


>gi|83313114|ref|YP_423378.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947955|dbj|BAE52819.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 658

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 8/244 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L +  EA       K+ F+  +S+E+R+P+  I+G   LL       L ++  + 
Sbjct: 145 QARITLLDAKEAAEAGTRAKSEFLAVMSHEIRTPMNGILGMVRLLLDR---PLEAEDRER 201

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E +  S+ +LL ++++ILDL+ V+AG M+   S       L  ++  ++ +  E  + +
Sbjct: 202 LEMVHHSAELLLGILDNILDLSKVEAGRMEFERSPFSPARTLAGIQTLLSARAREKGLEL 261

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN-GDFIFSVKNN 726
                 ++  +V  D  RL QI   +  NA+ F+  G   + +  A D  G   FSV + 
Sbjct: 262 SHAIGPEVPEWVEGDGGRLRQILLNLAGNALKFTDSGHVLIRVGLAGDGSGRLEFSVTDT 321

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  + E     +F+ F        RR  G GLGL+I    +   GG + + S     +  
Sbjct: 322 GIGLGEAEIGRLFHAFAQADSSITRRFGGTGLGLAICRRLVEAQGGEIGVESRPGVGSRF 381

Query: 785 NCRI 788
             R+
Sbjct: 382 WFRL 385


>gi|237713589|ref|ZP_04544070.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406312|ref|ZP_06082861.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646555|ref|ZP_06724191.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806620|ref|ZP_06765454.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229446311|gb|EEO52102.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355015|gb|EEZ04106.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638078|gb|EFF56460.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446156|gb|EFG14789.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 541

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 108/517 (20%), Positives = 212/517 (41%), Gaps = 47/517 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              N     +++IL NL   I + D   +    + N+       I     A   ++ E+ 
Sbjct: 45  KKTNHSYRFSFDILDNLPFPIFVKDIANDFRYYYWNKESAVQSGISSEE-AIGHTDYEIY 103

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGTI 413
              R          ++   + +    K     ++ +  P+G    T+ V    +  G   
Sbjct: 104 GEERGE-------KYRNIDKELVQEGK-VYRKEEKYITPDGITHDTIAVKSIISWEGEKR 155

Query: 414 WMF---ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           W+     ++T   + E +           +K Q   +  +  G+     + R+      +
Sbjct: 156 WLLATRWDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRV-----QW 210

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +              I    S   NE  G   F   I      R ++      + D
Sbjct: 211 EETRQIASLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTI-----RVDD 265

Query: 524 SVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              E +  P+   +        +L F N+T+ ++  R L E  E   +++ +K++F+ ++
Sbjct: 266 VDFEVTATPVFGDEKETEIIGGLLRFENITEKLKMNRMLQEAKEKAEESNRLKSAFLANM 325

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF++++  ++       + ++V+ IS+++ +LL L++DILDL+ ++AG
Sbjct: 326 SHEIRTPLNAIVGFSEMVCQTEEEEE---KQEFVKIISSNNILLLQLIDDILDLSKIEAG 382

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   +N+L+  + + +  K    +++I             DR RL Q+     +
Sbjct: 383 TMEFTFAQTDINELMEGICRQMQEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTN 442

Query: 697 NAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           NA+ F+SKGS  +  +    + +  F VK+ G  IP D    VF RFV        +G G
Sbjct: 443 NALKFTSKGSIEMGYRIEEASDEIYFYVKDTGIGIPADKIDKVFERFVKLNSF--IKGTG 500

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+I    +   GG +   S +   +    +IP  E
Sbjct: 501 LGLAICRVIVERLGGVIGAESKEGEGSCFWFKIPRTE 537


>gi|330828750|ref|YP_004391702.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
 gi|328803886|gb|AEB49085.1| Sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
          Length = 1131

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 2/235 (0%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            ++N +L++AD++K+  + + S+ELR+P+  I G  + +  S+   L   Q + +  I  
Sbjct: 447 HKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQ-DLTEGQQKQLGLIIK 505

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  L  LV+D+LD   +  G ++++   +    ++  V       +    + +  IS  
Sbjct: 506 SADGLARLVDDLLDYHQMRYGQLEIHSQPVSSKGVIRLVLDLCQHLVQAKPLTLVDISPA 565

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +L   +AD QRL Q+   ++ NA+ ++ +G  V+L A  +N      V + G  I  D  
Sbjct: 566 ELPPVLADEQRLEQVLYNLVGNAIKYTPQG-KVVLSAIVENNFLRIKVTDTGIGIAPDHL 624

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + +F   V  +    ++G GLGLSI    ++L GG + + S     +T    +P 
Sbjct: 625 EHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLPL 679


>gi|325927602|ref|ZP_08188832.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
 gi|325542036|gb|EGD13548.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            perforans 91-118]
          Length = 1191

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 13/252 (5%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIF 721
            +  +   D  L      D  R+ QI   +L NA+ F+ +GS V L+              
Sbjct: 906  LAFQCELDEALPPALHGDASRVQQILLNLLFNAVKFTERGS-VHLRLTTLPQYTRQGLRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  +  +    +F RF          +  G GLGL+I        GG V+++S  
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVTSEL 1024

Query: 779  EGVTTINCRIPS 790
                     +P 
Sbjct: 1025 GQGACFVVELPL 1036


>gi|295690558|ref|YP_003594251.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
 gi|295432461|gb|ADG11633.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
          Length = 574

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 134/283 (47%), Gaps = 1/283 (0%)

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            D   SL     L ++ +L   +  +   Q +    +VT       AL +          
Sbjct: 255 RDGAASLDFVPALGAERLLALDLQRVAPNQLVGVLRDVTAERDRAAALEQARADAEGLAA 314

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            +  F+ ++S+ELR+PL  I+GF+D+++    G L+ + ++Y E I  S   LL+L+ND+
Sbjct: 315 GRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHESGGHLLDLINDV 374

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ ++A   +L        + +    + +  +     ++++ +         ADR+ L
Sbjct: 375 LDMSKIEAERFELQRGVFDAREAIQAAMRLLRVQSDSAGVQLRGVLPPGELEVDADRRAL 434

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            QI   ++SNA+ F+ +G  V +     +G     V + G  I  +  + +   +     
Sbjct: 435 KQIVLNLVSNALKFTPRGGQVTVTLDGYDGVLEIVVADTGVGISPEDLERLGRPYEQAGG 494

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             QR RG GLGLS+V +F  LHGG ++I S     TT++ R+P
Sbjct: 495 AEQRARGTGLGLSLVRAFAKLHGGEMAIESRLGAGTTVSVRLP 537


>gi|209916101|gb|ACH90385.1| two-component osmosensing histidine kinase [Stemphylium vesicarium]
          Length = 1329

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 156/404 (38%), Gaps = 45/404 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 573 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 632

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 633 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 688

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 689 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 748

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 749 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 805

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 806 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 865

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A +         F F+V + G  I  D    +F+ F    
Sbjct: 866 LVGNAIKFTEHGEVKVAISMAPEQECGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 925

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               R   G GLGLSI +  + L GG + + S     +     +
Sbjct: 926 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFTL 969


>gi|220911752|ref|YP_002487061.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219858630|gb|ACL38972.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 551

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 161/389 (41%), Gaps = 43/389 (11%)

Query: 416 FENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW------- 467
            E+   Q+    +       +    +D +  GV     DG   L N   R+         
Sbjct: 190 LEDKDAQLQANLRTSQRQESLLNTVLDTVHLGVLAVDADGHDVLMNRKQRANHLLASPKD 249

Query: 468 ---KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLS 522
                E   L  G   + +     R    +   + F   +    D R  ++   T   + 
Sbjct: 250 NPDPNESQLLVFGPDRKTLIPVEDRPVRRAVLGETFTDYLVWLGDGRDQRAFVTTARAMK 309

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           DS   +       A +++ F +VTD V A  A              K+ FV  VS+E R+
Sbjct: 310 DSDGAF-------AGSVIAFSDVTDLVNALAA--------------KDDFVSSVSHEFRT 348

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT+I+G+ ++L           Q + +E I  +S  LL LV+D+L  +    G + ++ 
Sbjct: 349 PLTSILGYVEILL---ADEPEESQEEMLEIIRRNSERLLTLVSDLLA-SR--NGQLIVSP 402

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            T+ + +L+     S   K   + + +   +  +L + V D  R+ Q+   ++SNA+ +S
Sbjct: 403 HTVDVAELVRTSVSSALPKATASGVVLAAETPDQLEAHV-DGARISQVLDNLVSNAIKYS 461

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
             G  V++  ARD+G     V + G  +  +    VF +F   +   R    GVGLGL I
Sbjct: 462 PDGGNVLVSLARDDGHLECRVTDTGMGMTPEDASEVFAKFFRTSNVRRTAIPGVGLGLPI 521

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            ++ +  HGG +S+ S+    TT   R+P
Sbjct: 522 SKAIVEAHGGTISVDSTLGQGTTFTFRVP 550


>gi|220908402|ref|YP_002483713.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
 gi|219865013|gb|ACL45352.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
          Length = 1669

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 116/683 (16%), Positives = 230/683 (33%), Gaps = 77/683 (11%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW-HRDQAGDILWANISYKKNTETEGI 231
            G +  + E     + L ++    K+   +     W        + W++  Y +    E  
Sbjct: 976  GAFLNITERKRAEQNLRDNEQQLKLALQAAKAGAWSWELATNCLYWSDEYY-RVFGLEPG 1034

Query: 232  VFQKAIGESRKLFKEEIKKRMIS------SSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
              + +          + ++ +        +     N    +   +        I ++   
Sbjct: 1035 SIEPSYENGFSRLHPDDREWVERETTEAIAQGKNTNLEYRILLPDGTFRWVVGIGQMFFD 1094

Query: 286  FGE-----AGIAIDVSKEITVNDQLTHTYEILHNLTV-----AIAIFDQNRYLQFHNRSF 335
              +     AGI +D+++   V  +L    E+   L       A+ IFD +      + + 
Sbjct: 1095 EWQQPVRMAGIVVDITERKQVEAELRKKEELYRALAHNFPNGAVHIFDHDLRYLLSDGTE 1154

Query: 336  VELWEIDLAFLATN------PSNDE-LLEFLRSANKLPEQLNWK-TWKENIFSVYKSSET 387
            +    +    L  +      PS    +LE L  A    E    +  +   I+ +Y     
Sbjct: 1155 MRKVGLSQEQLEGHLLWEVVPSETSTVLEPLYQAALSGETTISELAFAGQIYQIYTLPLR 1214

Query: 388  HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK---------YNTLVKVQGE 438
             +             +        T+    +   Q   E                +    
Sbjct: 1215 DQQGEIFAGLSMSQNVTLLKQAEQTLRTARDELEQQVQERTRELQEANALLQQREREFRT 1274

Query: 439  TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             +++  + +       R    NPA                           ++ E+   +
Sbjct: 1275 LVENTPDVITRHDRQYRCLYINPASTQSLGMPPEFFIGKKPSELGYPDDLVHFWENSLEN 1334

Query: 499  LFAAIITSFD-------DERKSLQ----GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            +FA      D       DE +S Q      LEL+ +   + +II +     M    +VT 
Sbjct: 1335 VFATGQMQIDEFNVTNGDEIQSYQVCVVPELELVPEQENDRTIISV-----MTIGRDVTR 1389

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              +AE A  +  E L+++++    F    S++L+ PL  I  FT LL     G L++K  
Sbjct: 1390 LKQAEEAAQKLAEELKRSNQELEQFAYVASHDLQEPLRAITSFTQLLAKRYRGQLDAKAE 1449

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             Y+E+I   +T +  L+ D+L  +   AG  +L    +    LL++VK+ +   + E   
Sbjct: 1450 TYIEFIVDGATRMQQLIKDLLTYSR--AGRYELKLQPVDCQTLLDQVKKDLQVVITETQA 1507

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILKAAR------------ 714
             +       L + +AD  +   +   ++SN++ + S     + + A +            
Sbjct: 1508 TLT---ADPLPTIIADPTQFKNLLQNLISNSLKYRSEISPKIHVSARKVFLRSENEFIAA 1564

Query: 715  --------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
                     + +++FSV++NG  I     + +F  F       +  G GLGL+I    I 
Sbjct: 1565 PSSLSLPGTHEEWLFSVQDNGIGIEPQYAERIFGIFQRLHTSDEYSGTGLGLAICRKIIE 1624

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
             H G + + S      T    IP
Sbjct: 1625 RHHGRIWVESQLGQGATFFFTIP 1647



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 113/361 (31%), Gaps = 47/361 (13%)

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE 288
                +  I   R + + +  +  +     E        T E         +  LN   +
Sbjct: 111 AAGEIEAVINTGRDITERQQAENALRQLTEELEARVLARTEE---------LTALNESLQ 161

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
             IA     E  + +     + ++  +   I +  +N  +   N  F  ++         
Sbjct: 162 VEIAERQKAEQALQESQMRFHALVDAMFEGIVVQ-ENGKIIEANPGFANMFGY------- 213

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV---T 405
             S DE++         PE L  +T   +I + Y+    ++ T    +G  +++ V    
Sbjct: 214 --SLDEVIGKSAVDFLTPESL--ETVMGHIQNEYEL--PYEMTGIKKDGTLINLEVVGKQ 267

Query: 406 SNPRGGTIWM--FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           S  +G  + +    ++T +   E       +   +  D + + V +    G  +  N  +
Sbjct: 268 SLYQGRRVRVSAARDITERKRAEIALREKEQQLQQLSDSMPQFVWISNAQGETEYVNRQW 327

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
                     L     ++ +A     ++ E     L    I     +   ++  L+  SD
Sbjct: 328 LEYSGL---TLEQSCDLQKVAEF---HHPEEVQSVLEQWAIARATQQPFEMEARLKRASD 381

Query: 524 ---SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                     +P  + Q  +     T +   +R + + NE           F+  +   L
Sbjct: 382 GAYRWFLIRSVPALDQQGQVVRWYGTSTDIHDRKVAQLNE----------QFLSDLDRRL 431

Query: 581 R 581
           R
Sbjct: 432 R 432



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/459 (13%), Positives = 132/459 (28%), Gaps = 60/459 (13%)

Query: 169  LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
              +       AE  L    L    ++  +        +   D+    +  +  +    + 
Sbjct: 702  QDISDRKQAEAERKLAEIVLQEREALLHLFAQYAPAGIAMFDREMRYVMTSQRWAD--DY 759

Query: 229  EGIVFQKAIGES-RKLFKEEIKKR----MISSSALEKNFCETVSTLEHGNNKSYK----- 278
                 +  +G S  +LF E  ++         +   +   E +     G  +  +     
Sbjct: 760  YYGSLESLVGRSHYELFPEMPERWRQIHQRCLAGAIEQCDEDLFVRADGKQQWIRWEVRP 819

Query: 279  -IVRVLNSFGEAGIAIDVSKEI-----------TVNDQLTHTYEILHNLTVAIAI-FDQN 325
                     G    A D+++              +  ++T    +L  + + I I  D  
Sbjct: 820  WYSATDEIGGIIIFAEDITQRKQAEAAVLQLNLELQQKVTELQTLLDVIPIGIGIAEDPA 879

Query: 326  RYLQFHNRSFVELWEIDLAFLAT-------NPSNDELLEFLRSANKLPEQLNWKTWKENI 378
                  N +F E+  I     A+        P+N ++ +  R     PE+L         
Sbjct: 880  GQHIRINPAFAEVLGIPPTVNASLSAPEEERPTNFKVYQNGRE--LAPEEL--PLQYTAT 935

Query: 379  FSVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNT 431
              V       +  W   +G T+ ++  + P         G++  F N+T +   E     
Sbjct: 936  HGVEIRDLEVEVVWQ--DGTTVTLLEYAAPLFDQSGQTRGSVGAFLNITERKRAEQNLRD 993

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH--IRNIAATCSR 489
              +     +     G   +         +  +  ++  E   + P        +      
Sbjct: 994  NEQQLKLALQAAKAGAWSWELATNCLYWSDEYYRVFGLEPGSIEPSYENGFSRLHPDDRE 1053

Query: 490  YYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +        +     T+ +       GT      +     +    P+  A  +   V++T
Sbjct: 1054 WVERETTEAIAQGKNTNLEYRILLPDGTFRWVVGIGQMFFDEWQQPVRMAGIV---VDIT 1110

Query: 547  DSVRAERALTEKNEALRKADEIKNSF----VQHVSYELR 581
            +  + E  L +K E  R       +F    V    ++LR
Sbjct: 1111 ERKQVEAELRKKEELYRALAH---NFPNGAVHIFDHDLR 1146



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/596 (11%), Positives = 178/596 (29%), Gaps = 66/596 (11%)

Query: 46  RQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDI 105
           R R S A+ + E       + ++  +   L         + + + ET  +  Q  +   +
Sbjct: 274 RVRVSAARDITERKRAEIALREKEQQLQQLSDSMPQFVWISNAQGETEYVNRQWLEYSGL 333

Query: 106 PQTDT-DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAET-------------QNDC 151
               + DL     +        + +     R   Q F++ A               ++  
Sbjct: 334 TLEQSCDLQKVAEFHHPEEVQSVLEQWAIARATQQPFEMEARLKRASDGAYRWFLIRSVP 393

Query: 152 AIKIEGRVSG-----------SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFD 200
           A+  +G+V               A L    L  +   L + T         +S       
Sbjct: 394 ALDQQGQVVRWYGTSTDIHDRKVAQLNEQFLSDLDRRLRQLTDSQAMEWEVVSSLGEYL- 452

Query: 201 SLDFLVWHR-DQAGDILWANISYKKNTETEGIV-----FQKAIGESRKLFKEEIKKRMIS 254
            +D  +WH  D    +      + +  + +         +  + E  + ++      +  
Sbjct: 453 QVDRCLWHTVDLEAGMTTVGQDWYRQLDLKSTTGVYRLSEYILPEMIRHYRTGQPLVIED 512

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV--------SKEITVNDQLT 306
            +          +  +H       I  + +    A +A++          +   + + + 
Sbjct: 513 VTTHVYTESVAHNFAQHKIRAILGIPWIESGHWVAALAVNSCTTRTWRSDEVRLLQEIVA 572

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRS------FVELWEIDLAF------LATNPSNDE 354
             + ++        + +Q    +    +      F  L + +L +      L   P++ +
Sbjct: 573 RLWSLIEQKRAVKVLQEQEERTRLATEAADLGMWFWNLTQNELVWTDRCKALFGLPADGQ 632

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRG 410
           +   +      P+  ++     N     ++    +     P+G    +           G
Sbjct: 633 ISYEVFLQTLHPDDRDFTHAAVNQALEQRTEYNIEYRIVWPDGSIHWISAKGRGFYDADG 692

Query: 411 ---GTIWMFENLTVQV--DLETKYNTLVKVQGETIDHL-----SEGVAVFGPDGRIKLSN 460
                +   ++++ +   + E K   +V  + E + HL       G+A+F  + R  +++
Sbjct: 693 QPIRMMGTAQDISDRKQAEAERKLAEIVLQEREALLHLFAQYAPAGIAMFDREMRYVMTS 752

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
             +   +         G     +       + +     L  AI    +D      G  + 
Sbjct: 753 QRWADDYYYGSLESLVGRSHYELFPEMPERWRQIHQRCLAGAIEQCDEDLFVRADGKQQW 812

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +   V  +          ++   ++T   +AE A+ + N  L++      + +  +
Sbjct: 813 IRWEVRPWYSATDEIGGIIIFAEDITQRKQAEAAVLQLNLELQQKVTELQTLLDVI 868



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 97/305 (31%), Gaps = 28/305 (9%)

Query: 39  IPIILLIRQRNSLAKKVNETYSFLSE-------ICDQLSKYHSLLTENNCLTIVWDGKDE 91
           +   +L R    L          ++E       + +   ++H+L+       +V +    
Sbjct: 142 LEARVLART-EELTALNESLQVEIAERQKAEQALQESQMRFHALVDAMFEGIVVQENG-- 198

Query: 92  TPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ-SFDLVAETQND 150
             +II       ++     D +  ++ + F     L      ++ E +  +++    ++ 
Sbjct: 199 --KIIEANPGFANMFGYSLDEVIGKSAVDFLTPESLETVMGHIQNEYELPYEMTGIKKDG 256

Query: 151 CAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
             I +E     S    R + +     ++ E       L       + L DS+   VW  +
Sbjct: 257 TLINLEVVGKQSLYQGRRVRVSAAR-DITERKRAEIALREKEQQLQQLSDSMPQFVWISN 315

Query: 211 QAGDILWANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK-NFCET 265
             G+  + N  + +      E    + + A     +  +  +++  I+ +  +       
Sbjct: 316 AQGETEYVNRQWLEYSGLTLEQSCDLQKVAEFHHPEEVQSVLEQWAIARATQQPFEMEAR 375

Query: 266 VSTLEHGNNKSYKIVRVLNSFGEA------GIAIDVSKEITVN---DQLTHTYEILHNLT 316
           +     G  + + I  V     +       G + D+            L+     L  LT
Sbjct: 376 LKRASDGAYRWFLIRSVPALDQQGQVVRWYGTSTDIHDRKVAQLNEQFLSDLDRRLRQLT 435

Query: 317 VAIAI 321
            + A+
Sbjct: 436 DSQAM 440


>gi|94986195|ref|YP_605559.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94556476|gb|ABF46390.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 1140

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 103/517 (19%), Positives = 192/517 (37%), Gaps = 70/517 (13%)

Query: 330 FHNRSFVELWEIDLAFLATNPSND---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE 386
           F N ++     +  A+   +PS+    E+ + +    +   +    TW E++    + S 
Sbjct: 71  FCNDAYRPTLGVKEAWALGSPSDRVWAEIWDDIGPRIQHVLETGEATWDEDLRLFLERSG 130

Query: 387 THKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL---ETKYNTL---------VK 434
             ++T+H     T      ++ RG    M   +T + +    E +   L          +
Sbjct: 131 YPEETYH-----TFSYSPLADDRGHITGMLCVVTEESERVVGERRLRMLRDLAARSGEAR 185

Query: 435 VQGETIDHLSEGV----------AVFGPDGR--------------------IKLSNPAFR 464
              E +  L   +           V+ P+G                     +++   A  
Sbjct: 186 TPAEVLAALRACLEAEAHDLPFALVYLPEGEEEALQLAAAVGLDPERLGLPLRMLGAAGD 245

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           + W  +         + +++A         D     A ++         L    +  +  
Sbjct: 246 APWPVQAVFNDLVPRVADLSALPDLPTGPWDRPPTQALVL--------PLAQAGQTRAAG 297

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN---------EALRKADEIKNSFVQH 575
           V   ++ P                 +   AL   N         EAL + D  K +F  +
Sbjct: 298 VFVAALNPYRPLDEDYRGFLGLFVGQVTAALKGANAYEEERRRAEALAELDRAKTAFFAN 357

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            S+ELR+PLT ++G  + L T   G L ++Q + +E     S  LL LVN +LD + ++A
Sbjct: 358 ASHELRTPLTLMLGPLEDLLTGDAGPLTARQQEVLEMAHRGSLRLLRLVNTLLDFSRLEA 417

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G  + +Y    L  +  ++  S  + M    +R  V           D +   ++   +L
Sbjct: 418 GRAQASYVPTDLATVTADLASSFRSAMERAGLRYGVEVSPLSEPVYVDPEMWEKVVLNLL 477

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRG 753
           SNA  F+  G  V +  A++  + +  V+++G  IP      +F RF  V         G
Sbjct: 478 SNAFKFTLSGE-VAVTLAQEGREAVLRVRDSGVGIPAAELGRLFERFHRVEGQRGRSFEG 536

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            G+GL++V   + LHGG V + S++   TT   R+P 
Sbjct: 537 TGIGLALVREIVALHGGRVEVQSAEGQGTTFTVRLPL 573



 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/358 (22%), Positives = 145/358 (40%), Gaps = 23/358 (6%)

Query: 447  VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
            VAV G    I   +PA   +  +       G     +      +       +  AA   +
Sbjct: 785  VAVRGAGALIYDWDPATNGILYSGAVEHITGYRADELPGRLEDWTERLIHPEDRAAF--A 842

Query: 507  FDDERKSLQGTLELLSDSVLEY--SIIPLPNAQTMLTF------------VNVTDSVRAE 552
             + ER    G    L   V+    +++ + +    +               +VT+  RAE
Sbjct: 843  HEIERVLATGEAFQLGFRVVRRDGTVLDVEDDGYFMRDEAGRVRHMVGFVRDVTERKRAE 902

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             AL + NE L +++     F    S++L+ P+  +  F  LL       L+ +  QY+  
Sbjct: 903  TALRQANEELSRSNAELERFAYIASHDLQEPIRTVGSFAGLLARRYGDVLDERGRQYLHT 962

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            +   +  +  LV+D+L  + ++A         + LN  ++E    +   + E   R+ V 
Sbjct: 963  VELGALRMKTLVDDLLVFSRLNAAHPPFQL--LDLNVPVHEALARLDMTLQETGARVTV- 1019

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG--STVILKAARDNGDFIFSVKNNGSSI 730
              G L +   D  RL Q+F  +++NA+ F  +G    V + AAR    +  +V +NG  I
Sbjct: 1020 --GDLPTVYGDPSRLAQLFQNLIANAVKFRREGVPPEVTIGAARAGNLWHLTVSDNGIGI 1077

Query: 731  PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +     +F  F     R +  G GLGL+I +  +  HGG + + S+    +T +  +
Sbjct: 1078 EQAYFTRIFEMFQRLHSRDRYEGSGLGLAICQKIVAQHGGQMWVESTPGAGSTFHFTL 1135



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 20/179 (11%)

Query: 34  LLTTIIPIILLIRQRNSLAKKVN----ETYSFLSEICDQL----SKYHSLLTENNCLTIV 85
           LL  +   + L R R     +      E  + ++E   ++     +Y   +     L   
Sbjct: 737 LLAKVGAHLALARLRREALAREQAYSAELEARVAERAREVVQWRDRYEVAVRGAGALIYD 796

Query: 86  WDGKDETPEIIGQLHQRID-----IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS 140
           WD         G +          +P    D    E  +        +   E++   G++
Sbjct: 797 WDPATNGILYSGAVEHITGYRADELPGRLEDWT--ERLIHPEDRAAFAHEIERVLATGEA 854

Query: 141 FDL--VAETQNDCAIKI--EGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
           F L      ++   + +  +G      A  R+  + G   ++ E       L       
Sbjct: 855 FQLGFRVVRRDGTVLDVEDDGYFMRDEAG-RVRHMVGFVRDVTERKRAETALRQANEEL 912


>gi|66045261|ref|YP_235102.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255968|gb|AAY37064.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
          Length = 645

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+ +     +Q
Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHM---THEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      + N
Sbjct: 302 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRN 361

Query: 667 IRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           + +++     L +   + D  R+ QI   ++ NA+ F+ +G  V + A     D+    F
Sbjct: 362 LLLELHIQPGLETMNVIGDPTRIRQILVNLIGNALKFTERG-KVCVDARWAMLDDERLHF 420

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V+++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S 
Sbjct: 421 TCAVQDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLYAESK 480

Query: 778 DEGVTTINCRIPS 790
           +   +    +IP 
Sbjct: 481 EGSGSLFTLQIPL 493


>gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
           V453]
 gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
           V453]
          Length = 1031

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 3/233 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             L   D +K+ F+ + S+ELR+PL  I+     L     G+L++KQS+ +  I ++   
Sbjct: 426 RRLLTLDGLKDEFMANTSHELRTPLHGIVNIAQSLLDGASGALSAKQSKELSMIVSTGNR 485

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LVNDILD + +  G + L+   + L  +   V + +        + ++      L  
Sbjct: 486 LSTLVNDILDFSKLKNGEIVLHRQPVDLKAVTQSVLEVVTHLSAGKPLSLEQQWPENLPW 545

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D  RL QI   +L NA+ F+  G TV + A   +G    SV + G  I E+    +F
Sbjct: 546 LDTDEDRLRQILYNLLGNAVKFTESG-TVRVTADIIHGHVRISVSDTGIGISEERLVDIF 604

Query: 740 NRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +     A   +  G G+GLSI +  + L GG +   S     +  +  +PS
Sbjct: 605 KSYDQIGYASDREYSGTGIGLSITKKLVELGGGEIWAESEPGVGSVFHFTLPS 657



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 694  ILSNAMDF--SSK--GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            I+ NA+    + +  G TV ++          SV +NG  +  D   S+       +   
Sbjct: 929  IVENAVRHGVTRQLSGGTVRIQIHEREERITISVTDNGVGMSPDKVNSL------LSGAH 982

Query: 750  QRRGVGLGLSIVE----SFINLHGGHVSISSSDEGVTTINCRIPS 790
               GVGL            + L+G  + I S     T+++  +P 
Sbjct: 983  HTGGVGL-----RNIHARLLTLYGKGLQIESRLGFGTSVSFEVPL 1022


>gi|312116146|ref|YP_004013742.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
 gi|311221275|gb|ADP72643.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
          Length = 635

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 167/374 (44%), Gaps = 18/374 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFG--PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           T +KV  +  +  S G+ +    PDG +++    FR         +  G     + A   
Sbjct: 244 TTLKVLQDAGNSSSSGIFMGNGSPDGIVRI--QHFRKFPDL-PLTIISGVGRDEVLAPVR 300

Query: 489 RYYNESDGWDL--------FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R      G  L         A ++    ++R   +  L+  SD V       L  ++ + 
Sbjct: 301 RQELTFVGLGLAALCLPLIMAIMLNREINKRVVQEAALDRESDKVRMEHAALLSISEELA 360

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                     AE  L        +A+E K++F+ ++S+ELR+PL  I+GF+++++   +G
Sbjct: 361 NERVKLRRTNAE--LVAAKSRAEQANEAKSAFLANMSHELRTPLNAILGFSEIIRDKMIG 418

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   + + Y   +  S T LLN+VNDILD+  ++AG ++L+   I L+ L++     + +
Sbjct: 419 NDIDRYASYAADVHKSGTHLLNIVNDILDVTRIEAGKLELHEDEINLDTLIHRSLLDVQS 478

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDF 719
           +     + +   +         D+ +L QI   +LSNA+ F++KG  +++ A  + +G  
Sbjct: 479 QALAGGVLLAAPARNLGVVLRGDKGKLKQILVNLLSNAIKFTAKGGRIVISATPEWDGGL 538

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +++ G  +  D  +     F    +    +  G GLGL +      LHGG +++ S 
Sbjct: 539 CVKIRDTGIGMSGDEIRQALELFRQVENGLARRYEGAGLGLPLAVRLTELHGGTLTVDSI 598

Query: 778 DEGVTTINCRIPSK 791
               T ++ R P+K
Sbjct: 599 PGEGTEVSVRFPAK 612


>gi|145606116|ref|XP_001406723.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15]
 gi|145013842|gb|EDJ98483.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15]
          Length = 1994

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 121/245 (49%), Gaps = 19/245 (7%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +L  +Q  Y   I  S+  L+
Sbjct: 1312 LKEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQET---TLTEEQRDYTNTIHTSANSLI 1368

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+  V + ++T      + +  I + ++ ++V
Sbjct: 1369 MIINDILDLSKVDAGMMKLKYEWFHTTSLIEAVNELVSTMAIAKGLELNYIVEPEVPAWV 1428

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKG------STVIL---KAARDNGDFIFSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F+S+G      S   +   +   D     FS+ + G    
Sbjct: 1429 KGDKVRIRQVLLNVIGNAIKFTSEGEVFSRCSVATVKENEIGEDEIMLEFSIIDTGRGFT 1488

Query: 732  EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR-- 787
            +D  + +F  F     +   Q  G GLGL I    + LHGG ++ +++    +T      
Sbjct: 1489 KDESELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGQMNGTATPGKGSTFTFTAK 1548

Query: 788  --IPS 790
              +P+
Sbjct: 1549 FGLPT 1553


>gi|297807105|ref|XP_002871436.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317273|gb|EFH47695.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 923

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/500 (17%), Positives = 180/500 (36%), Gaps = 83/500 (16%)

Query: 353 DELLEFLRSANKLP----------EQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
            +L    R   +            E+ +    WK+   ++ K  E   +       +   
Sbjct: 137 SDLFRRFRQKKRDALVDSKKIEIYEEFDTVAYWKQKALNLEKMLEASTERERRLVEKLSE 196

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            + T   +   +          +L              + +    +     D R      
Sbjct: 197 SLKTMESQSAPV---------QELTQNLERAEGFLHFILQNAPIVMGHQDKDLRYLFI-- 245

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            +       E  +   T +              +  D    ++      ++ +  T +L 
Sbjct: 246 -YNKYPSLREQDILGKTDVE-----IFHGGGVKESQDFKREVLEKGKASKREITFTTDLF 299

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTD----------------------SVRAERALTEKN 559
                   + P+ N       +N                             E  L +  
Sbjct: 300 GSKTFLIYVEPVYNKAGEKIGINYMGMEVTEQVDKREKMAKLREDNAVRKAMESELNKTI 359

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
               +    K   +  +S+E+RSPL+ ++G  ++L T++   L+ +Q Q +  + +S  +
Sbjct: 360 HITEETMRAK-QMLATMSHEIRSPLSGVVGMAEILSTTR---LDKEQRQLLNVMISSGDL 415

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLG 678
           +L L+NDILDL+ V++G+MKL  +     +++  V Q+ A  + + ++ ++  I+D    
Sbjct: 416 VLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASL-KKSLTLEGNIADDVPI 474

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKA------ARDNG-------------- 717
             V D  R+ QI + ++SNA+ F+ +G+  + L+       ARDN               
Sbjct: 475 EVVGDVLRIRQILTNLISNAIKFTHEGNVGIKLQVISEPSFARDNTLTADTEEQEQNGLT 534

Query: 718 ----DFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGH 771
                    V + G  IPE+    +F +++     H  +  G GLGL+I +  + L GG 
Sbjct: 535 ETSVWICCDVWDTGIGIPENAIPCLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQ 594

Query: 772 VSISSSDEGVTTINCRIPSK 791
           ++++S     +T    +P K
Sbjct: 595 LTVTSRVNEGSTFTFILPYK 614


>gi|242277606|ref|YP_002989735.1| PAS sensor protein [Desulfovibrio salexigens DSM 2638]
 gi|242120500|gb|ACS78196.1| PAS sensor protein [Desulfovibrio salexigens DSM 2638]
          Length = 2133

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 159/377 (42%), Gaps = 24/377 (6%)

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGV--AVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
            +   D ET++ TL       ++ ++ GV  A    DG +  +N A   ++   +      
Sbjct: 1476 SDLRDSETQHRTL-------LESINVGVFRAEADADGLLLKANRALAEMFGYRDWNEFRK 1528

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            T +R +      Y        +   ++       + +    +  +   +  +     N  
Sbjct: 1529 TQVRTL------YIEPQMHQKILDELLEGGIVRDREINMRKQDGTPIWVNMTASMERNGN 1582

Query: 538  TMLTFVNVTDSV---RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                   V + +   R  +   ++  A   A++ K+ F+  +S+E+R+P+  I+G  DLL
Sbjct: 1583 KENCLEGVLEDITEKRKAQEFEKEKVAANAANKAKSDFLASMSHEIRTPMNAILGMADLL 1642

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              S+L  +   Q  YV+    +   LL L+NDILDL+ ++AG + L      L +L  E+
Sbjct: 1643 WESRLSKI---QRNYVKIFRNAGENLLLLINDILDLSKIEAGQIDLEEIDFNLEELFEEI 1699

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                A +    ++      D ++   +  D  RL QI   ++ N++ F+ KG+ +     
Sbjct: 1700 GSIFALRAQIKSVDFCWYIDPEVPRIITGDPTRLRQIIVNLVGNSLKFTEKGTIIFEAGI 1759

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
             +NG   F VK+ G  IP +   S+F+ F        R   G GLGLSI    +   GG 
Sbjct: 1760 TENGYLRFLVKDTGVGIPVEKMNSIFDTFSQADSSTTRNYGGTGLGLSICSRMVESMGGG 1819

Query: 772  VSISSSDEGVTTINCRI 788
            + +SS++      +  I
Sbjct: 1820 IFVSSTEGEGADFSFTI 1836


>gi|254464241|ref|ZP_05077652.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
 gi|206685149|gb|EDZ45631.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
          Length = 733

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 109/581 (18%), Positives = 221/581 (38%), Gaps = 43/581 (7%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--SFGEAGIAIDVSKE 298
            +      ++   +S      F   V   E    ++ ++   L+  +   A +A+  ++ 
Sbjct: 23  VETLMRRAEQSSDASGEAYAQFQRAVMLEEEVRVRTRELEHALDLLNESNARLALANAET 82

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                 L +  E +       A+FD    L   N  F +        L       + +  
Sbjct: 83  EAARANLANAIETVQ---EGFALFDAQDVLVMCNTRFGKHLSDIYHLLRPGLKFADYVNL 139

Query: 359 LR--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +   +   LPE      W+    + +K      +   +     L V     P GGT+ + 
Sbjct: 140 VATSAHLALPEGETAADWEAYRIARHKDDHAVFNVM-MAGNSWLQVSEHRTPDGGTVILQ 198

Query: 417 ENLTVQVDLETKYNTLV-----KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            ++T  + LE +    +     +V   T++HL +GV +F    R+   N     L     
Sbjct: 199 TDITDMMRLERQERERLLDDQSRVIKATLEHLDQGVCIFDAQNRLVGWNRRAGELLSMPA 258

Query: 472 NRLSPGTHIRNI---AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
            +   G     +   AA   R    +   D+ A + ++   +R  L   + L  D +L  
Sbjct: 259 GKFQLGMFFATLYRQAADNIRILGGTRLDDVEAWVASTA--KRAPLSFEIGLGRDRILAV 316

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------------------DEIKN 570
               +P+   +++F +VT    A R +++ NE L +                   +  K+
Sbjct: 317 FAQQMPDKGFVISFTDVTAERAAVRTISQVNETLEQRVAERTLELEDALSEAERANASKS 376

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            FV   S++L  PL+    +   L+     ++   ++        +   +L     +LD+
Sbjct: 377 RFVAAASHDLLQPLSAAKLYVGSLEDDLQDAVFRDRAAKAGNALVAVERILG---ALLDI 433

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +D+G+  ++ + I L  +L+++K  +        +  +V+  G +    +D   L +I
Sbjct: 434 SKLDSGLAAIDRTAISLGSMLDQLKDELEPVARLKGLDFRVVRSGAV--VESDAAYLRRI 491

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRG 749
              + SNA+ ++  G  V++   +  G  +  V++ G  IP +    VF  F   NA   
Sbjct: 492 LQNLASNAVRYTGSG-KVLIGVRQRPGRVLLEVRDTGPGIPPEHQDRVFQEFQRLNAKAS 550

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              G+GLGL+IVE    L    ++++S     T  +  +P 
Sbjct: 551 PSDGMGLGLAIVERACRLLKHPLNLTSEVGRGTCFSVELPL 591



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 81/306 (26%), Gaps = 30/306 (9%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-KKNTET 228
           +LD +    A   L   +     +      +++       D    ++  N  + K  ++ 
Sbjct: 64  ALDLLNESNARLALANAETEAARANLANAIETVQEGFALFDAQDVLVMCNTRFGKHLSDI 123

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN---- 284
             ++                    +       ++          ++  + ++   N    
Sbjct: 124 YHLLRPGLKFADYVNLVATSAHLALPEGETAADWEAYRIARHKDDHAVFNVMMAGNSWLQ 183

Query: 285 -------SFGEAGIAIDVSKEITVNDQLTH---------TYEILHNLTVAIAIFDQNRYL 328
                    G   +  D++  + +  Q                L +L   + IFD    L
Sbjct: 184 VSEHRTPDGGTVILQTDITDMMRLERQERERLLDDQSRVIKATLEHLDQGVCIFDAQNRL 243

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              NR   EL  +             L        ++         +  + S  K +   
Sbjct: 244 VGWNRRAGELLSMPAGKFQLGMFFATLYRQAADNIRILGGTRLDDVEAWVASTAKRAPLS 303

Query: 389 KDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL--------ETKYNTLVKVQGETI 440
            +     + + L V     P  G +  F ++T +           ET    + +   E  
Sbjct: 304 FEIGLGRD-RILAVFAQQMPDKGFVISFTDVTAERAAVRTISQVNETLEQRVAERTLELE 362

Query: 441 DHLSEG 446
           D LSE 
Sbjct: 363 DALSEA 368


>gi|32400380|dbj|BAC78679.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 156/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 969


>gi|312886118|ref|ZP_07745738.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301400|gb|EFQ78449.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 559

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 153/356 (42%), Gaps = 26/356 (7%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           K     I+ + + V        I  +N    +L    E++L  G H  ++ A  +     
Sbjct: 226 KRIEAIINSMQDAVVGLDDKMTIVFANQVACTLIGQTEDKL-IGHHGPDV-ALENDLLRN 283

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
               D     I + + E    + T+++++D      +I L N                  
Sbjct: 284 MLVTDQHKMKIYADNKESFFNKETVDVVNDGTTIGKVIILKN------------------ 325

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                    ++ DE K +F+  +S+EL++P+++I     LL+ +++G +NS+Q Q ++ I
Sbjct: 326 -----ITEFQQLDEAKTNFIATISHELKTPISSIKMSLKLLEDARIGDVNSEQRQLLQNI 380

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  LL +  ++LDLA V+ G + LN+      +++N   Q++     +  I IK+  
Sbjct: 381 DDDTRRLLQITGELLDLAQVETGKINLNFGNTHPQNIVNYAVQAVKFIADQKQITIKINC 440

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L    AD  +   +   +LSNA+ +S+  ST+ L   R      FSVK+ G  I   
Sbjct: 441 PDSLPDVQADLDKTTWVLINLLSNAVKYSASKSTIELTVKRHKDMLEFSVKDYGQGIDAR 500

Query: 734 MCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F R+      G  + G GLGL+I + FI   GG + + S +   +     +
Sbjct: 501 YLSRIFERYFKVPGAGLDKTGTGLGLAIAKDFIEAQGGKIGVESQEGEGSRFFYTL 556


>gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 545

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 149/342 (43%), Gaps = 16/342 (4%)

Query: 459 SNPAFR-SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
            N A   +L K +E  L        +          S  ++    +     +  K+L+  
Sbjct: 58  WNHALSLTLQKVDELTLEVDEKNARLEEKLDLIKRFSWVYERNEELTQEIRERNKALKAE 117

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV--RAERALTEKNE---ALRKADEIKNSF 572
           +E  + +  E         + +    N    +  + + A+ + NE      +A++ K  F
Sbjct: 118 IEERNRTAEELRHHRDHLDELVQERTNDIARINEKLKSAIIKANELARRADEANQAKTQF 177

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+P+  +IGFT++L+ +   +L+  Q  +V  I  S   LL L+ND+LD + 
Sbjct: 178 LANMSHEIRTPMNGVIGFTEMLEET---NLDEAQRDFVATIKRSGESLLTLINDVLDFSK 234

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIF 691
           ++AG   LN        +++EV + I  ++ +  ++I  +  G + S    D QR  QI 
Sbjct: 235 IEAGEFTLNEVDFSPELIVHEVSELIRPRIGKKPVKISSVISGNMPSRVKGDEQRFRQIL 294

Query: 692 SKILSNAMDFSSKGST-VILKAARDNGDFIF---SVKNNGSSIPEDMCKSVFNRFVSNA- 746
             ++ NA  F+  G   + L    +  D +    S+++ G  I E   K++F  F  +  
Sbjct: 295 INLMGNAQRFTDSGEIEIQLSIDEETSDQVLVHTSIRDTGIGIAERDLKTIFEPFRQSDG 354

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               +  G GLGLSI +   N+  G V   S     +T +  
Sbjct: 355 TSTRKYGGTGLGLSICKQLSNMMRGDVWAESKLFEGSTFHFT 396


>gi|220909974|ref|YP_002485285.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866585|gb|ACL46924.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 701

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 116/246 (47%), Gaps = 6/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L  +   L++A+ +K+ F+  +S+ELR+PL  I+ ++ +L+  K      K 
Sbjct: 310 ERAELVSSLQHQTGELKRANRVKDEFLAVLSHELRTPLNPILAWSQMLQHRKFSQ--DKL 367

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +  +E I  ++ +   L++D+LD+A +    + LN   + L  +++   +++       +
Sbjct: 368 AIGLETIERNAKLQAQLIDDLLDMARILRDKLVLNPVPLDLGRVIDAAIETVQPSAAAKS 427

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + I+      +G    D  RL Q+   +L+NA+ F  +G  V +  A+        VK+N
Sbjct: 428 VVIEKHFSA-VGQVSGDAARLQQVIWNLLANAVKFVPEGGRVQIGLAQIGDRIQIQVKDN 486

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783
           G  I  D    VF  F        R   G+GLGL+IV   + +HGG ++  S  D    T
Sbjct: 487 GKGIKPDFLPYVFESFRQADASTTRTFGGLGLGLAIVRQIVEMHGGTITADSEGDGQGAT 546

Query: 784 INCRIP 789
               +P
Sbjct: 547 FTVLLP 552


>gi|28210209|ref|NP_781153.1| sensory transduction histidine kinase [Clostridium tetani E88]
 gi|28202645|gb|AAO35090.1| sensory transduction histidine kinase [Clostridium tetani E88]
          Length = 444

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 158/384 (41%), Gaps = 13/384 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA-----FRSLWKTEENR 473
           +    +L  K  ++V +    +D     +   G  G  K  N        +   K EE  
Sbjct: 29  IEEIQNLMEKLYSIVGISHSILDLDGNLIVGIGEKGIYKSKNTKEYFSYNQKYDKKEEYF 88

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L           +  +   E  G+ +        +D+        E L        I  +
Sbjct: 89  LLTCKEGTKKIVSPIKVKEERIGYIVTEDFFIKGEDKEHCKTCIREDLEYINYVEKIPVI 148

Query: 534 PNAQTMLTFVNVTDSVRA--ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              Q   T +   D +     + +T+ +       ++++ F  ++S+E R+P+T I+   
Sbjct: 149 NEEQVKNTIIYQRDLIELIINKKITDLSYEENAYAKMRHKFFANLSHEFRTPITVILSSL 208

Query: 592 DL----LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            +    LK ++   L+ K + Y++ I  ++  LL L+N+++D+  ++ G + L      +
Sbjct: 209 YMCEIFLKKTQEDILDIKVTTYLKNIKKNAYRLLRLINNLIDMTKINCGELILFKENNDI 268

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
            +++ E    +A  ++  NI I   +D +      D++++ +I   +LSNA+ F+ +G  
Sbjct: 269 VNIVEETTLRVAKYVYSKNIDIVFDTDVEEKIIACDKEKIERIILNLLSNAVKFTPRGGR 328

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
           ++++    N     SV++ G  IPE+    +F  F            G G+GL I++S +
Sbjct: 329 ILVQVENTNDFVRISVEDTGIGIPEEEKDLIFEPFTQVDKGFSRIAEGSGIGLPIIKSLV 388

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            +H G + + S     +     +P
Sbjct: 389 EMHKGIIWVESICGEGSKFFIELP 412


>gi|85076393|ref|XP_955920.1| hypothetical protein NCU01823 [Neurospora crassa OR74A]
 gi|28916951|gb|EAA26684.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 2476

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 124/272 (45%), Gaps = 16/272 (5%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             S++ L            T +  AE       +   +A + K+ F+ +VS+ELR+PL  +
Sbjct: 1915 VSMVALQKRALAKAVEAETKARNAEAEAIRNVKLAEEAAKAKSIFLANVSHELRTPLNGV 1974

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            IG ++LL+ S   +LN +Q +  + I  S+ +LL ++NDILD + ++A  MKL       
Sbjct: 1975 IGNSELLRDS---NLNKEQLEMADSIRVSADLLLTVINDILDFSRMEADKMKLYIIAFNP 2031

Query: 648  NDLLNEVKQSIA----TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +++ EV ++ +     K  + N++I    +        D  RL Q+   ++ N++ F+ 
Sbjct: 2032 EEMVREVVRAASYSNKEKTSKKNVKIVHDINLPPMLIYGDPIRLHQVLGNLIGNSLKFTE 2091

Query: 704  KGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
             GS + + A  D+         F VK+ G  I       +F  F         +  G GL
Sbjct: 2092 HGS-ITIGAKVDSETTEKATLTFWVKDTGIGISPQQLDKLFLPFSQADESTARKYGGSGL 2150

Query: 757  GLSIVESFINL-HGGHVSISSSDEGVTTINCR 787
            GLSI +S I     G + + S +   TT+   
Sbjct: 2151 GLSICKSLIESTMKGKIRLDSEENVGTTVWFT 2182


>gi|144899228|emb|CAM76092.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 730

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 93/482 (19%), Positives = 186/482 (38%), Gaps = 39/482 (8%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENI--FS 380
           D++    F + SF  +     A L      D              +++ + W+ ++   S
Sbjct: 250 DRDERYVFISDSFESITGRSPATLLGKRRWD--------LGSTEMEVDAELWQGHLEDLS 301

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLV 433
            +++    K      NG+   +  +  PR        G      ++T  ++   + + L 
Sbjct: 302 AHRAFRDFKYWIEADNGRPCWLKESGVPRFDDEGHFIGYRGTGADITAAMESAHRMHMLT 361

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +     ++     V +   D RI+  NP F          +     I  + +       +
Sbjct: 362 R----AVEQSPVSVVITDLDRRIQYVNPKFLDATGYGAQEV-----IGQMPSILKSGRTD 412

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDS 548
              +    A +   +  R       +  S    + +I P+ N +  +T       ++TD 
Sbjct: 413 DTVYQDLWATLERGEQWRGEFVNRRKDGSLYWEQATIQPIRNLEGRITNYLGIKLDITDR 472

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            RAE  L    + L+++++    F    S++L+ PL  I  F  LL+       + +   
Sbjct: 473 KRAEDKLGHLLDELKRSNQDLEQFAYVASHDLKQPLRQISSFATLLERRLGDQASDEVRD 532

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y+ +++  +  +  LV D+LD + V      L+  ++ ++++L+     +   M +    
Sbjct: 533 YLGFLNDGAKRMQALVGDLLDYSRV--SHRPLHNDSVAMDEVLSAALVLLNAAMADGA-- 588

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
             VI    L +   DR +L ++   ++ NA+ +     T I++   D+G  +F V +NG 
Sbjct: 589 -AVIERQPLPNVQGDRSQLERLLQNLVGNALKYRDPARTPIIRIGCDDG--VFFVADNGI 645

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCR 787
            I  D    VF  F          G G+GL+I    +  HGG + +SS+ D   TT    
Sbjct: 646 GIAADQADRVFMIFQRLHSAQAYEGTGIGLAICRKIVERHGGRIWLSSAGDGQGTTFFFT 705

Query: 788 IP 789
           +P
Sbjct: 706 LP 707



 Score = 60.7 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 87/275 (31%), Gaps = 30/275 (10%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
                   L+   + F+   +      W  D+    ++ + S++  T             
Sbjct: 220 RLQSFYGDLAEREARFRQYSEVNSDWYWETDRDERYVFISDSFESITGRSPATLLGKRRW 279

Query: 240 SRKLFKEEIKKRMISSS----ALEKNFCETVSTLEHGNNKSYKIVRVLNS--------FG 287
                + E+   +        +  + F +    +E  N +   +               G
Sbjct: 280 DLGSTEMEVDAELWQGHLEDLSAHRAFRDFKYWIEADNGRPCWLKESGVPRFDDEGHFIG 339

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID----- 342
             G   D++  +    ++      +    V++ I D +R +Q+ N  F++          
Sbjct: 340 YRGTGADITAAMESAHRMHMLTRAVEQSPVSVVITDLDRRIQYVNPKFLDATGYGAQEVI 399

Query: 343 ---LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
               + L +  ++D + + L +  +  EQ     W+    +  K    + +   +   + 
Sbjct: 400 GQMPSILKSGRTDDTVYQDLWATLERGEQ-----WRGEFVNRRKDGSLYWEQATIQPIRN 454

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           L   +T+      + +  ++T +   E K   L+ 
Sbjct: 455 LEGRITN-----YLGIKLDITDRKRAEDKLGHLLD 484


>gi|329896809|ref|ZP_08271725.1| two-component system sensory histidine kinase [gamma
           proteobacterium IMCC3088]
 gi|328921564|gb|EGG28944.1| two-component system sensory histidine kinase [gamma
           proteobacterium IMCC3088]
          Length = 508

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 126/290 (43%), Gaps = 13/290 (4%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV-----RAERALTEKNEALRKAD 566
           K LQ   EL+    L + I     +  +       + +      A   +    E    A+
Sbjct: 210 KRLQKGTELIGAGDLSFRIQTADQSGELADLGRAFNDMSEKLANAIGEVQMAKEQADSAN 269

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL---NSKQSQYVEYISASSTILLNL 623
             K++F+ +VS+ELR+PL  IIG++++++            +  + +  I  S   LL L
Sbjct: 270 AAKSTFLANVSHELRTPLNAIIGYSEMIQEEVNDGEAINKDQLQEDLTKIVFSGRQLLTL 329

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +ND+LDLA ++ G M ++  +      L+ V  S+A  ++     +     G L     D
Sbjct: 330 INDVLDLAKIETGKMTIHPESFDPIATLHTVADSMAPLLNTQGNEMCWDIQGPLPCIHTD 389

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNR 741
             +  QI + +LSNA  F+  GS + ++A   +        V++ G  + +     +F  
Sbjct: 390 ATKFRQIVTNLLSNANKFTEAGS-ITIRAGITDSQEQIWIEVRDTGIGMTDQQLGRIFEA 448

Query: 742 FVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F            G GLGLS+ + F ++ GG ++ SS+    ++    +P
Sbjct: 449 FEQAERSTSSRYGGTGLGLSLCQEFAHMLGGDITASSTPNVGSSFIVTLP 498


>gi|320160738|ref|YP_004173962.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319994591|dbj|BAJ63362.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 521

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 150/369 (40%), Gaps = 16/369 (4%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L T+ N   +     +D L++G+ +  PD  I+  NPA   +       +    H   I
Sbjct: 164 QLYTQTNLEKERLNALLDSLADGILILRPDHSIERCNPAISRMLNLPLENIRGRRHDEII 223

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTF 542
                R+     G  L  A    +      L     L  +  L  S + PLP   T    
Sbjct: 224 -----RWSKPPQGITLEQAESDGW-----PLTPHAYLYVEGDLSRSGLAPLPVGITYAPL 273

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           ++  + +    A        R+A+E+K++F+  VS+EL++P+  I G+   L+       
Sbjct: 274 ISSENKLVNIIATVRDITRFRQAEELKSTFISIVSHELKTPVALIKGYVSTLRREDASWD 333

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                  ++ I   +  L  ++ ++LD + + AG + L  S + L +L   V Q + T+ 
Sbjct: 334 PEIIQDSLKVIEEEADRLAVMIENLLDASRLQAGGLTLKKSDLSLPELARRVAQRMQTQT 393

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             +  RI V         +AD  RL Q+ + ++ NA+ ++  G  + +         I  
Sbjct: 394 SSH--RIVVDFPDDFPIVLADEGRLQQVLTNLIGNAIKYAP-GGEIRVHGEARGNQIIVC 450

Query: 723 VKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE-G 780
           V + G  I  +    VF+RF  N     + +G GLGL +  + I  HGG + + S     
Sbjct: 451 VSDQGPGINPEDVPHVFDRFYRNPEAAKKTKGAGLGLYLSRAIIEAHGGRIWVDSHPGQQ 510

Query: 781 VTTINCRIP 789
              I   +P
Sbjct: 511 GARICFTLP 519



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 4/154 (2%)

Query: 278 KIVRVLNSFGEAGIAI-DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            I  + +   +A IA+ +       N +      +L +L   I I   +  ++  N +  
Sbjct: 145 DIALLSSFADQAAIAVQNAQLYTQTNLEKERLNALLDSLADGILILRPDHSIERCNPAIS 204

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY--KSSETHKDTWHL 394
            +  + L  +     ++ +           EQ     W     +    +   +      L
Sbjct: 205 RMLNLPLENIRGRRHDEIIRWSKPPQGITLEQAESDGWPLTPHAYLYVEGDLSRSGLAPL 264

Query: 395 PNGQTLHVIVTS-NPRGGTIWMFENLTVQVDLET 427
           P G T   +++S N     I    ++T     E 
Sbjct: 265 PVGITYAPLISSENKLVNIIATVRDITRFRQAEE 298


>gi|302851080|ref|XP_002957065.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f.
           nagariensis]
 gi|300257621|gb|EFJ41867.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f.
           nagariensis]
          Length = 2041

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 4/224 (1%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+  +S+ELR+PL  II  +D L     G +N K   +V+ I  SS  LLN++NDIL
Sbjct: 274 KDQFMSLMSHELRTPLNGIIQLSDALVRGAGGEMNPKGQHFVKTIKNSSNHLLNIINDIL 333

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D+A +  G + + +    L   +  V   +A      ++ I+   D      +AD  R++
Sbjct: 334 DVAALKEGKLTIKHELCSLAKAVEHVVDIVAPLAR-KDVAIERSVDPHTPLIIADFSRVI 392

Query: 689 QIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           QI   +  NA+ F+ +G   V +  + D       V + G  IP +    ++  F     
Sbjct: 393 QILYNLAGNALKFTHRGRVCVRVSPSADGSSVTLQVADTGIGIPPERISGIWGAFEQVDM 452

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  G GLGL+IV+  +  H G + + S++   TT    +P
Sbjct: 453 SVTRKYGGTGLGLNIVKQLVEAHEGKIEVQSAEGRGTTFTVTLP 496


>gi|268591166|ref|ZP_06125387.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131]
 gi|291313393|gb|EFE53846.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131]
          Length = 924

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/394 (21%), Positives = 172/394 (43%), Gaps = 43/394 (10%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFG-PDGRIKLSNPA 462
           GG I+    L  +  LE   NT ++++       + +     G+ +    DG   LSN  
Sbjct: 310 GGLIFFLIWLLERKMLEPAENTAIRLEEHEQFNHKIVASAPVGIIILRLTDGGNILSN-- 367

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                               +A    R  N+ D   +   I      ++ S    +   +
Sbjct: 368 -------------------ELAHDYFRLLNDDDKQRILTII-----RQKSSNYIDVVTTN 403

Query: 523 DSVLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + L+ S +          +   V+++  V+ E++L +  +A  +A+  K+ F+  VS+E
Sbjct: 404 GTHLQISFVNSRYQNEDVAICVLVDISIRVQMEKSLQDVADAAEQANHAKSMFLATVSHE 463

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  IIG  +LL+  +   L  K ++ V  +  SS++LL +++DILD + +++  +K
Sbjct: 464 LRTPLYGIIGNIELLQRYE---LPEKATRLVSTMDNSSSLLLQIISDILDFSKIESKQLK 520

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNA 698
           +        ++   V  +    + +  I +    +  +   +  D  RL Q+ S I++N+
Sbjct: 521 IESKLFNCREVFAFVLANYLPLVTKKKISLYSFIEPNIPDLILNDPVRLQQVISNIVNNS 580

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGL 756
           + F+  G  V+L   +D       ++++G  +   +   +F+ F    + +    +G GL
Sbjct: 581 IKFTESG-FVLLYVWKDENYLKIEIRDSGIGMTHAVVMKLFDPFFQVYDQNNMGHKGTGL 639

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GL+I E  +NL  G + +SS     ++   RIP 
Sbjct: 640 GLAICEKLVNLMDGDIEVSSQIGLGSSFTIRIPL 673


>gi|158333298|ref|YP_001514470.1| two-component hybrid histidine kinase sensor and regulator
            [Acaryochloris marina MBIC11017]
 gi|158303539|gb|ABW25156.1| two-component hybrid histidine kinase sensor and regulator
            [Acaryochloris marina MBIC11017]
          Length = 1575

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 126/325 (38%), Gaps = 23/325 (7%)

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            +   C +  N      L   I    D  R+     +EL+     +  I            
Sbjct: 1014 VLQHCQKNLNRQGFLQL--PIAEQNDMLRRWTADEVELIEALANQVGIALAHAKLLEQEK 1071

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                        L         A++ K+ F+ ++S+ELR+PL  I+G+  +L+ S   SL
Sbjct: 1072 QQSHKLSEQNHELLVAKREAEFANQAKSEFLANMSHELRTPLNGILGYAQILQRSA--SL 1129

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + K  + ++ +      LL L+ D+LDL+ ++A  M+L+  +   ++ L  + +    K 
Sbjct: 1130 SPKDHKGIQVMHQCGQHLLTLIEDLLDLSKIEAQRMELHPDSFHFHEFLTGISELCTIKA 1189

Query: 663  HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDN---- 716
             +  + +       L     AD QRL QI   IL NA+ F+  G+    +  A D     
Sbjct: 1190 QQKGLELITQFASNLPQGIYADEQRLRQILLNILGNAVKFTDSGNVTFKVAIAPDPLPPI 1249

Query: 717  ------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVES 763
                           +F V + G  I       +F  F    H  +  +G GLGL+I  +
Sbjct: 1250 SQKDDLPHGETIQSIVFQVSDTGIGIVAQELSKIFLPFEQAGHPDRYHQGTGLGLAISHN 1309

Query: 764  FINLHGGHVSISSSDEGVTTINCRI 788
               + GG +S+ S     +  +  +
Sbjct: 1310 LTAMMGGKLSVISQPNEGSVFSFTL 1334



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/405 (15%), Positives = 137/405 (33%), Gaps = 56/405 (13%)

Query: 197 VLFDSLDFLVWHRD-QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
            LF+ L   VW  D +   + WAN +  +    E +        S      EI+ +   +
Sbjct: 20  TLFNRLTTPVWIFDIEQMRMWWANTAALELWNAESLEELLNRDWSDYSEATEIRLQSYLN 79

Query: 256 SALEKNFCETVST--LEHGNNKSYKIV--RVLNSFGEAGIAID--VSKEITVNDQLTHTY 309
              + +      T   + G   S + +   +    G   +  +        V+     + 
Sbjct: 80  KFRQGDSVTEQWTFYPKGGAAVSVRCIFSGITIESGRLAMLSEGISDALEQVDVDSLCSL 139

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
           E L + TV I+++D   +    N + ++ +  ++   +    N    +       L  Q 
Sbjct: 140 EALRHTTVMISLYDLEGHAILQNPAALQCYGDEVRLGSEQTFNRRFKD-----PNLAHQA 194

Query: 370 NWKTWKENIFSVYKSSET-HKDTWHLPNGQTLHVIVTSNPRGGTIWMF---ENLTVQVDL 425
                 E +FSV    +T     WH  +     V  T NPR G + +     N++ +   
Sbjct: 195 LSAVKAEEVFSVEVQVQTLQGMEWHGID-----VRGTQNPRTGELAILVNEHNISDRKRA 249

Query: 426 ETKYNTLVKVQGE----------------------TIDHLSEGVAVFGPDGRIKLSNPAF 463
           E   N L++ + +                       +D + + +            N AF
Sbjct: 250 EIALNQLLRQEQQRTFEQLQQTQTDLHESQRLLQLILDTIPQSIFWKDRQSTYLGCNLAF 309

Query: 464 RSLWKTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
                        G    ++      + +Y + D       I+ + + E + ++  ++  
Sbjct: 310 AKDAGLSAPHQIVGLTDYDLPWLKEEADWYRQCD-----RKIMETVEPEDRIVETQIQAD 364

Query: 522 SDSV-LEYSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNE 560
              + +E S +PL N++      +  + ++T+  +++ AL    E
Sbjct: 365 GRQIWVETSKLPLLNSEQEVVGILGLYEDITEREQSKEALQLVLE 409



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 12/149 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
                 +       L     + +++ D++   ++ +D+    L  N+++ K+        
Sbjct: 261 QQRTFEQLQQTQTDLHESQRLLQLILDTIPQSIFWKDRQSTYLGCNLAFAKDAGLSAPHQ 320

Query: 234 QKAIG--ESRKLFKEEIKKRMISSSALEKNFCET--VSTLEHGNNKSYKIVRVLNS---- 285
              +   +   L +E    R      +E    E   V T    + +   +          
Sbjct: 321 IVGLTDYDLPWLKEEADWYRQCDRKIMETVEPEDRIVETQIQADGRQIWVETSKLPLLNS 380

Query: 286 ----FGEAGIAIDVSKEITVNDQLTHTYE 310
                G  G+  D+++     + L    E
Sbjct: 381 EQEVVGILGLYEDITEREQSKEALQLVLE 409


>gi|78048724|ref|YP_364899.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037154|emb|CAJ24899.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1191

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 13/252 (5%)

Query: 548  SVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +RA+  L   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +    L+ +Q
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PLDGRQ 845

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              Y   I  +   LL LVND LDLA ++AG + L+Y    L  L+ +V + +     +  
Sbjct: 846  QGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQ 905

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIF 721
            +  +   D  L      D  R+ QI   +L NA+ F+ +GS V L+              
Sbjct: 906  LAFQCELDEALPPALHGDASRVQQILLNLLFNAVKFTERGS-VHLRLTTLPQYTRQGLRV 964

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  +  +    +F RF          +  G GLGL+I        GG V+++S  
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVTSEL 1024

Query: 779  EGVTTINCRIPS 790
                     +P 
Sbjct: 1025 GQGACFVVELPL 1036


>gi|196231875|ref|ZP_03130731.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196223997|gb|EDY18511.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1088

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 11/302 (3%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV----TDSVRAERA 554
           L A + +      K  +G L +L+   +        +A  + +  NV        RAE +
Sbjct: 637 LDARLKSGISVAVKGSEGPLGVLAAFTMAARAFAQDDAHFLQSVANVLTAAIQRERAEES 696

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +  E    A   K  F+  +S+ELR+PL  I+GFT L++T  LG      ++ VE++S
Sbjct: 697 IRQAREQAELASRAKTEFLSRMSHELRTPLNAILGFTQLMETETLGPS---LAESVEHVS 753

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS- 673
            +   LL+L+N++LD++ +DAG   L+   I ++  L+E  +SI      + I + +   
Sbjct: 754 RAGKHLLSLINEVLDISRIDAGRFALSPEPIEVHGFLSEAIESIQPLATRHVIPVTLEPA 813

Query: 674 --DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +      +ADRQR+ Q+   ILSNA+ ++     V +    D      ++ + G  I 
Sbjct: 814 TAEMPPLQVLADRQRVHQVMYNILSNAVKYNRINGRVTVSYRVDGPRIRITIADTGRGIE 873

Query: 732 EDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +    +F  F    A      G G+GL++    +N   G + + S     +T    +P 
Sbjct: 874 PEKLSRLFLPFERLGAESTDIEGSGIGLALSRGIVNALHGELHVESRVGEGSTFWLTLPR 933

Query: 791 KE 792
            +
Sbjct: 934 AD 935



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 125/397 (31%), Gaps = 50/397 (12%)

Query: 199 FDSLDFLVWHRDQAGDILWANIS------YKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
           FD L  +VW  + +G   + N +      Y+         F     E ++ + + I+  +
Sbjct: 13  FDDLPMMVWVVEPSGAAAYFNKATLAFAGYESPVTLARDWFASVHEEEKESYADTIRNAL 72

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF--------GEAGIAIDVSKEITVNDQ 304
            +       +         G+ +  ++    +          G   +  D+S        
Sbjct: 73  QAHQGFAIEYRRRNDL---GDYR--RVTEHSSPIFGPKGVFSGLMSVLTDISDRPPTASA 127

Query: 305 LTHTYEILHNLTVAIAIFDQNRYL--QFHNRSFVELWEIDLAFL---------ATNPSN- 352
                E+L  +T    ++D +  +    +N +F+EL     A             +P + 
Sbjct: 128 TAQPVELLSQVTHD-MVWDWDLRINHVVYNAAFIELLGEAPAEYHAAHAWWRQHAHPDDI 186

Query: 353 DELLEFLRSANKLPEQL-NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
           + +L     A K      +++    +    Y + ++         GQ + ++V S     
Sbjct: 187 ERILHIYEEAMKTGATRLSYEYRIRDREDNYVTLDSRACLMRDATGQIIRLLVAS----- 241

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
                 ++T +   E     L+++   T D++  G+A    DG     N A R +   + 
Sbjct: 242 -----RDITNRRKAEEAQARLIRILEATTDYV--GMATV--DGHPFYINAAGRKMIGIDP 292

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           N         N     +    +              ++  K+  G    +S  +L +   
Sbjct: 293 NEPLDFHLTANHPDWANEILMKEAIPTAIRDGYWRGENALKNHDGREIPISQVLLSHRGT 352

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
              + +       + D    +R   E+ E   + D  
Sbjct: 353 ---DGEVEFLSTIIRDLSERKRDEVERIEWANRYDAA 386


>gi|71907997|ref|YP_285584.1| PAS [Dechloromonas aromatica RCB]
 gi|71847618|gb|AAZ47114.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 901

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 6/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L        +    K+ F+  +S+E+R+PL  ++G   +    +  S  SK  +    I+
Sbjct: 518 LEASRAEAERLALAKSEFLAKMSHEIRTPLHGVLGMAHI--GGRNTSEGSKAHEAFAKIT 575

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S  +LL ++NDILD + ++AG++K+  + I L  +L E  + +  + +   + +++   
Sbjct: 576 HSGNLLLGIINDILDFSKMEAGMLKIESTDIDLPAILAESMELMQERANAKKLSLQLRVA 635

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L +   +D  RL QI   +LSNA+ F+  GS V L A+ D    IF V + G  I  +
Sbjct: 636 ENLPAHCQSDSLRLRQILLNLLSNAVKFTVSGS-VTLDASFDGHQLIFKVSDTGIGITHE 694

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +FN F    +   RR  G GLGL+I    + L  G + + S+ +  +    R+P
Sbjct: 695 QSSKIFNPFEQGDNSTTRRFGGTGLGLAITSHLVKLMEGTIHLESTPDNGSRFEIRLP 752


>gi|78223839|ref|YP_385586.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78195094|gb|ABB32861.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 1216

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 110/596 (18%), Positives = 216/596 (36%), Gaps = 68/596 (11%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L    I   +  +  + ++  + +  +     +  +         EA  A D+++++ V+
Sbjct: 195 LLLGAIAIALAMAFFITRSVADPIRVVLDAVRRMEESGTEKARLAEAIAAGDLTQDVAVS 254

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           ++L    E +          D+   +    R+   +  I  +  A       + + LR  
Sbjct: 255 ERLRIDPETVAR--------DEGGMML---RAVAGMSGIQASLDAA---FSRMTDSLRRN 300

Query: 363 NKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTV 421
            +  +  +W K+    + ++ +     ++            +       G ++++ + T 
Sbjct: 301 RQEEQARDWLKSGANELGAILRGDRRLEEMVEKSLSFLCEYLGA---GVGVLYLYNDRTR 357

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVA---------------------VFGPDGRIKLSN 460
            +++   Y    +   +    L EG+                      +    G  K  N
Sbjct: 358 DLEIAATYALARREDMKKRFALGEGLVGEAAKERRIIRLADVPPGYLPISSAIGEAKPLN 417

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A   L    +N L     I +     +R            +I  + +  RK +   LE 
Sbjct: 418 IAAVPL--LHDNLLVGVVEIGSFREFTARELEFLSRAQEGLSIGINVNRSRKLVDELLEQ 475

Query: 521 LSDSVLEYSI---------------IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                 E  +                 +   Q         +     RAL  K + L + 
Sbjct: 476 TQAQTEELRVQQEELQQTNEELEERAQMLEQQREQIRAKNREVEETSRALKLKADELERI 535

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K+ F+ ++S+ELR+PL +++  + LLK ++  +L  KQ +Y   I++S   LL L+N
Sbjct: 536 STYKSEFLANMSHELRTPLNSLLILSSLLKENREHNLTDKQVEYAATINSSGNDLLTLIN 595

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADR 684
           DILDL+ +++G ++ NY  I L  L ++++   +    +  +    +I +G       D 
Sbjct: 596 DILDLSKIESGRLEFNYEQIPLRALFDQLRTMFSPLAEQKGLDFDAIIEEGVPEEITTDG 655

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSSIPEDMCK 736
           QR  QI   ++SNA  F+ +G  V ++A   N +            V + G  I  D   
Sbjct: 656 QRTQQILKNLVSNACKFTREG-RVAVRAHLPNSEENPLPAPAIAIQVSDTGIGISPDKHD 714

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            VF  F        R   G GLGLSI         G V + S +   ++    +P 
Sbjct: 715 LVFQAFQQADGTTSRKFGGTGLGLSISRQLARGLHGDVLLESEEGKGSSFTLYLPL 770


>gi|257453593|ref|ZP_05618883.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus
           SK60]
 gi|257449051|gb|EEV24004.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus
           SK60]
          Length = 442

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 143/364 (39%), Gaps = 37/364 (10%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA--TCS 488
           +LV+   +++  L + + +   +  I+  N +   L++ +      G ++  I       
Sbjct: 96  SLVQKVRDSLSALQDSIILIDKNDCIEWWNNSAERLFQFKAP--DQGRNVLTIIRNPLFH 153

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           +YY+  + +     I    + ER                                 +T  
Sbjct: 154 QYYHHIEDYPDGVRIHNPSNIER----------------------------YVQCKITKF 185

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            + +  L       +  ++++  FV +VS+ELR+PLT I+G+ + L  S+   L+ + ++
Sbjct: 186 GQEKLLLIYDVTRFQHLEQMRKDFVANVSHELRTPLTVIMGYVETL--SEQPELDPRIAR 243

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
               +   S  + N++ND+L L+ ++          I +  +L ++           +  
Sbjct: 244 AFTQMMQQSQRMNNIINDLLLLSRLENDEKPAEPKDIDIPKMLMQLFDDAQMYNKSYDHM 303

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I +  D  L   +     L    S +++NAM ++ KG  + +     +    FSV +NG 
Sbjct: 304 IHLHIDSTL-HILGYEDYLRSALSNLITNAMKYTPKGGEISISWHEYDAGVCFSVTDNGI 362

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I +   + +  RF         +  G GLGL+IV+  +  H   + I+S+    +T   
Sbjct: 363 GIEQRHIQRLTERFYRVDTGRSRETGGTGLGLAIVKHVLYQHHATLDITSTVGKGSTFTV 422

Query: 787 RIPS 790
             P 
Sbjct: 423 TFPK 426


>gi|258515402|ref|YP_003191624.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779107|gb|ACV63001.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 922

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 140/327 (42%), Gaps = 21/327 (6%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           + N+  T  R  N      L         +E ++    L++  + +  ++     + Q  
Sbjct: 426 LSNVGITIDRIVNYMQVEKLLKES-QVLTEELQTQAEELQIQQEELKTFN--EKLDEQYK 482

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            +     +    +  L EK   L      K+ F+ ++S+ELR+PL +++    +L  +  
Sbjct: 483 FSHQRAVELENIKVVLEEKASQLELNSRYKSEFLSNMSHELRTPLNSLLILAQMLAENDN 542

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            +L  KQ +Y E I +S   LL+L+NDILDL+  +AG M +    + L  +   +K+   
Sbjct: 543 SNLTHKQVEYAETILSSGRDLLSLINDILDLSKAEAGKMDVCPRVVKLKAIQEFLKRQYL 602

Query: 660 TKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
               +  I   +   +G   +F+ D QRLLQI   +LSNA  F+ +GS V+L   +    
Sbjct: 603 PVAIQKGITFTIQLKNGLPETFITDEQRLLQILKNLLSNAFKFTEQGS-VLLSIRKAEKR 661

Query: 719 FI--------------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
           F               FSV + G  IP D    +F  F         +  G GLGLSI  
Sbjct: 662 FTDKQILFDNASTMLSFSVSDTGVGIPRDKHIMIFEEFRQADGTTSRKYGGSGLGLSISN 721

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
               L GG + + S +   +T    +P
Sbjct: 722 KIAMLLGGFIELESEEGKGSTFTLYLP 748


>gi|168185721|ref|ZP_02620356.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169296297|gb|EDS78430.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 552

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 93/518 (17%), Positives = 215/518 (41%), Gaps = 31/518 (5%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +++E  +        +++  L  A+ + ++++ + F N   ++L          +    +
Sbjct: 9   INQEQIIKQDEEFYKKLIKVLPDAVFL-ERDKKIIFANDEGIKLLG---GIHKKDILGKD 64

Query: 355 LLEFLRSANKLPEQLNWKTW-KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---RG 410
           ++EFL    K  E +  K   K N     +  +  K    + + +  ++ ++ N      
Sbjct: 65  VVEFLHE--KFEEIIKPKVESKLNDNEEVREQKIVKLNGEVIDVEVKYIYISPNKNSEDK 122

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
               +  ++T +   E        +  +  + L   V +   D +I+ +N     +   E
Sbjct: 123 IKAVIVRDITKRKRYEKALRESESLHRKLTELLPMAVCIHDYD-KIEFANKNCAEILGIE 181

Query: 471 ENRLSPGTHI------RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL---ELL 521
           +        I       NI+ +  R     D  +    I+ SF+++   + G +   E  
Sbjct: 182 DKNKLINRSIFEFIYKDNISPSKKRLKKIEDYGE---KILPSFNNKAICVNGKIIDIETW 238

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYEL 580
           S ++ + + + + +    +T     + ++          E  R+ ++I+  F  ++S+EL
Sbjct: 239 STTLYDGNTVKILSVFRDITDYLQLEKIKQRAEENRILLEKEREFNKIRTEFFANLSHEL 298

Query: 581 RSPLTNIIGFTDLLKTSKLGSLN-----SKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           ++PL  I+G   LL               K  Q ++ +  +   LL L+N+I+D+  +++
Sbjct: 299 KTPLNIILGSQQLLNLYLGNLNKSEVNLPKIKQNLKILKQNCNRLLRLINNIIDITIINS 358

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G   +N     +  ++ ++  S+      N+I+I   +D +    + D +++ +I   +L
Sbjct: 359 GFFGMNLKNQNIVSIIEDITLSVVDYAKNNDIKIIFDTDIEEKITLCDEEKIERIMLNLL 418

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRG 753
           SNA+ F+ KG  + +    D      +V++NG  IP+D    +F+RF            G
Sbjct: 419 SNAVKFTPKGGNIKVNIHDDGDRIKITVRDNGIGIPKDKTHIIFDRFTQVDKSFTRSTEG 478

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G+GL +V++ + +H G +S+ +     +     +P K
Sbjct: 479 SGIGLYLVKALVEMHNGRISVDTKYGEGSEFIIDLPIK 516


>gi|322704067|gb|EFY95666.1| putative histidine kinase HHK2p [Metarhizium anisopliae ARSEF 23]
          Length = 2075

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 20/248 (8%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1406 LKEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQRDYTNTIQTSANSLI 1462

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  + +  + ++V
Sbjct: 1463 MIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLVEADVPAWV 1522

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---------DFIFSVKNNGSSI 730
              D+ R+ Q+   ++ NA+ F+++G      +   +              F++ + G   
Sbjct: 1523 KGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRVYTEEDPAVCNENEIMLQFAITDTGRGF 1582

Query: 731  PEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN--- 785
             ++  + +F  F     +   Q  G GLGL I    + LHGG +  ++     +T     
Sbjct: 1583 TKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAIPGKGSTFTFTA 1642

Query: 786  -CRIPSKE 792
               +PS E
Sbjct: 1643 RFTLPSPE 1650


>gi|296451495|ref|ZP_06893231.1| probable two component sensor histidine kinase [Clostridium
           difficile NAP08]
 gi|296259670|gb|EFH06529.1| probable two component sensor histidine kinase [Clostridium
           difficile NAP08]
          Length = 813

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 112/636 (17%), Positives = 245/636 (38%), Gaps = 61/636 (9%)

Query: 193 SVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
            + +   D++   VW   D   +I + N  +K     +   + K +   ++   E++ ++
Sbjct: 176 ELLRQALDTIPN-VWIVTDYDFNISYTNNKFKDEFSKDMDNYYKILTFIKE--DEKVAEK 232

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE- 310
           +           + V    +G      +    +         D++ EI +++++ H  + 
Sbjct: 233 LKKFDNDISIIDKLVEL--NGKIYLLSLSNNKDESNYLISLNDITNEIKIDEEIRHINKD 290

Query: 311 ---ILHNLTVAIAIFDQNR-----YLQFHNRSFVELWEIDLAFLATNP------------ 350
              I+ N+   I +           +   N+ + + ++   + L                
Sbjct: 291 YENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCTSSDLVDMTLEQYFETFNIDF 350

Query: 351 -SNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             N E      +  K  E +++  T    +  V   SE  +    +  G        S+ 
Sbjct: 351 FDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEEVRVGDYW-----SDN 405

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLW 467
           +   +  F ++T ++++    N    +  + +D + E + +      R+  +N AFR L+
Sbjct: 406 KLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLSTSRVLYTNRAFRELF 465

Query: 468 KTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAI----ITSFDDERKSLQGTLELLS 522
               + L   T   RNI     +Y N  +  +   +I      +   E K +  TL    
Sbjct: 466 GISSDVLGVTTQKYRNIL--VKKYINNLNIGEREKSIHIVNENNHIKEVKMISRTLYFGQ 523

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                  I  L             +S R ++AL ++     + D++K  F  ++S+EL++
Sbjct: 524 KRSRVRIIKDLS---------VQRESERLKKALIKQR----QYDQMKMEFYANISHELKT 570

Query: 583 PLTNIIGFTDLLKT----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           PL NI     L++      K+        ++++    +   LL L+++I++++ V + I 
Sbjct: 571 PLNNIYSSVQLVENLYKKGKIIDFQDILKEHIKITKQNMFRLLRLIDNIINISQVKSDIY 630

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           K+      + D+   +  SI++      I +   +D +      D + + +I   ILSN+
Sbjct: 631 KIKAVNFDIIDITERIVTSISSYAKSKGIDLIFDTDEETVMVGLDPESIERIILNILSNS 690

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
           + F+ +G  +++   + +      +K+ G  I ++    +FNRF    + G     G G+
Sbjct: 691 IKFTLEGGEILVGIYKKDETVEIIIKDTGVGIEKEKLNDIFNRFKQIENSGISNEFGSGI 750

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL + +S I +  G + I S     T +    P KE
Sbjct: 751 GLCLTKSLIEIQNGKIYIDSKVGEGTNVKIIFPIKE 786



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 103/296 (34%), Gaps = 35/296 (11%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           ++ +     + L  +     + D +  + + N  F + +  D+       +  ++L F++
Sbjct: 171 IDQRKELLRQALDTIPNVWIVTDYDFNISYTNNKFKDEFSKDMD------NYYKILTFIK 224

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM-FENL 419
              K+ E+L            + +  +  D     NG+   + +++N       +   ++
Sbjct: 225 EDEKVAEKLK----------KFDNDISIIDKLVELNGKIYLLSLSNNKDESNYLISLNDI 274

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-----RIKLSNPAFRSLWKTE---- 470
           T ++ ++ +   + K     I ++   + V   +G     ++   N  +   +K      
Sbjct: 275 TNEIKIDEEIRHINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCTSSDL 334

Query: 471 -ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VL 526
            +  L       NI    +R +   +      A I S++D    +   +   S+    V 
Sbjct: 335 VDMTLEQYFETFNIDFFDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVE 394

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS-----FVQHVS 577
           E  +    +   +   +   D  +    L   NE     +++ +      F++ +S
Sbjct: 395 EVRVGDYWSDNKLFKLLTFRDITKEINILRTVNEQKIIYEKLLDVIPEAIFLEDLS 450


>gi|264678720|ref|YP_003278627.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           CNB-2]
 gi|262209233|gb|ACY33331.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           CNB-2]
          Length = 924

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 155/369 (42%), Gaps = 43/369 (11%)

Query: 432 LVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            + +  + I+    G+++    DGR+ +SN A R L                        
Sbjct: 333 SLALNNKIIEVAPVGLSLVRRADGRLLVSNDAARRLL----------------------- 369

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSV 549
               +  D +   I     +  S +  L      +L ++ +P  +   +     ++T   
Sbjct: 370 ----EEHDSWREDIRQATTQAGSRECELRDGRSIILTFASMPYQSEDVVICGISDITVQK 425

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             ER+L     A  + +E K  F   +S+E+R+PL  I+G  +LL    L  LN +Q QY
Sbjct: 426 EVERSLRSAKLAADQVNEAKTMFFATLSHEIRTPLYGIVGTMELLA---LTGLNVQQQQY 482

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  SS  LL  +ND LDL+ ++AG  +L  + +   +LL  V  + A + H   + I
Sbjct: 483 LNTIQQSSATLLRTINDTLDLSRIEAGRQELYIAEVSPAELLERVVANFAARAHGKGLLI 542

Query: 670 KVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSV 723
             + D G   S  AD  R+LQ+ + ++ NA+ F+  G  V ++ + +N         F V
Sbjct: 543 YGLCDLGVPSSVRADSARILQVLNNLVGNAVKFTEAG-RVAVRVSAENLQPGRVRLRFQV 601

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I  +    +F  +       +    G GLGL+I     +L GG +S+ S     
Sbjct: 602 ADTGVGIRAEAQAQLFEPYFRADASAKEDISGSGLGLAICRRLSDLMGGSLSVVSEKGLG 661

Query: 782 T--TINCRI 788
           T  T    +
Sbjct: 662 TSITFAVTL 670



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
            +       ++  LL    +A +L E+ +  +W+E+I      + + +    L +G+++ 
Sbjct: 345 PVGLSLVRRADGRLLVSNDAARRLLEEHD--SWREDIRQATTQAGSRECE--LRDGRSII 400

Query: 402 VIVTSNP---RGGTIWMFENLTVQVDLETKYNTL 432
           +   S P       I    ++TVQ ++E    + 
Sbjct: 401 LTFASMPYQSEDVVICGISDITVQKEVERSLRSA 434


>gi|95931127|ref|ZP_01313852.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132817|gb|EAT14491.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 588

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 159/365 (43%), Gaps = 22/365 (6%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                +   + I  +S+G+ V   DGR++L NPA   L       L  G  +  I    S
Sbjct: 240 LQQEKERTDDIITSISDGLLVTDSDGRVELVNPAAEELLDIPAANL-IGQTLTAILQQAS 298

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
               +   +     I  S   +  +  G+L  +             +A+T     +   S
Sbjct: 299 --VEDHSNFLKPGNIGHSAQIKLNTQDGSLRTV-------------HARTAAVHNDQRCS 343

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                 L   N    + D +K+ F+   ++ L++P+T I G+++LL +    S N +Q +
Sbjct: 344 GEI-VLLLHDNTEEHRIDRMKSEFLSTATHNLKTPITAITGYSELLMSQDQLS-NDEQQE 401

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++ YI   +  L  L++++LD++ V++G  ++L  S +    L+NE++    ++  +   
Sbjct: 402 FLAYIHDKAWQLNKLIDNLLDISRVESGREVRLEKSDVKAQTLINEIEAFCDSQ--QTRC 459

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
                 +        D  +++ +   ++SNA+ FS  G  + L   +    +   + + G
Sbjct: 460 EFHDQFEQTDSLLYIDLSKIVLVMENLISNAIKFSPGGGRISLTGNKTGNSYEIKITDEG 519

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + +D C  VF+RF          +G GLGL++V+  +  HGG V + S     TT++ 
Sbjct: 520 IGMSDDECCQVFDRFYRADVSESAPQGFGLGLTLVKQLVEAHGGEVHVHSIPRQGTTVSF 579

Query: 787 RIPSK 791
           ++P +
Sbjct: 580 QLPIR 584



 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           +  +   T +I+ +++  + + D +  ++  N +  EL +I  A L
Sbjct: 240 LQQEKERTDDIITSISDGLLVTDSDGRVELVNPAAEELLDIPAANL 285


>gi|240140121|ref|YP_002964598.1| putative integral membrane sensor hybrid histidine kinase
           [Methylobacterium extorquens AM1]
 gi|240010095|gb|ACS41321.1| putative integral membrane sensor hybrid histidine kinase
           [Methylobacterium extorquens AM1]
          Length = 1071

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 594 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 651

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     +  +    
Sbjct: 652 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRP 711

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+ +G  V L+        +F++++ G  IPE 
Sbjct: 712 EILPAVVATDEKRLRQILLNLLSNAIKFTPEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 770

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F   +        G GLGL+I      + GG +++ S     T    R+
Sbjct: 771 DLGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRL 827


>gi|46201130|ref|ZP_00055703.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 879

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/502 (15%), Positives = 180/502 (35%), Gaps = 28/502 (5%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +         +  +  V +   D      + N  +++L       +        +  
Sbjct: 300 QQALAASEARYRMLTEHSPVGVFQADPEGTCLYANERWLDLAGRSRDEMLGAKWCRVVHP 359

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-------PRG 410
             R A           W+ ++    +     +      +G    V   +        P G
Sbjct: 360 DDREA-------VAALWQSHVSG--QGEFLAEMRLMRGDGSIRWVRGHAAALSDSEGPAG 410

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV-FGPDGRIKLSNPAFRSLWKT 469
           G +   E++T   + E +     +   +      + + +    DGR    N  F S+   
Sbjct: 411 GLVGTIEDITAAKEAERRLLLSEEKFAKAFRASPDAMVISLAEDGRYIELNDTFSSMLGY 470

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             + L   T +                       + +F+   +   G      D+++   
Sbjct: 471 GRDELMGHTALEMGVWALPEDRAALVAAARRDGQVVNFETRLRRKNGE---TFDTLISVQ 527

Query: 530 IIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            + L +   +     ++++    E    E    L  +++    F    S++L+ PL  I 
Sbjct: 528 EVVLDDQDCLLFICRDISERKAMEARGKELLARLDASNKELEQFAYVTSHDLQEPLRMIA 587

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+  L++    G L+    +++ ++   +  +  ++ D+L+ + VD   +   ++   + 
Sbjct: 588 GYAQLIERRYRGRLDKDADEFIAFLVDGAMRMQAMIRDLLEYSRVD--RLSGQFTCFSMG 645

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSKGS 706
           D+L++ + ++   + E    I+V   G +    ADR ++L++F  ++ NA+ +  + +  
Sbjct: 646 DVLDDARANLGAALAEAGGTIEV---GPMPEVNADRSQMLRLFQNLIGNALKYRSAERPP 702

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
            V + A +    ++FSV +NG  I       +F  F     R    G G+GL+I +  + 
Sbjct: 703 KVRVSAEQTARGWVFSVADNGIGIDPAYFDRIFLVFQRLHTREHYDGTGIGLAICKKIVE 762

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
            H GH+ + S           +
Sbjct: 763 RHSGHIWVESRPGEGCDFRFSL 784


>gi|332995524|gb|AEF05579.1| Signal transduction histidine kinase [Alteromonas sp. SN2]
          Length = 633

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 15/251 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D       +    E  + A++ K  F+  +S+E+R+PL  I G   LL  +    L+ K
Sbjct: 236 QDVEAMSADIENYVERAQAANKAKTDFLAVMSHEIRTPLNGIQGLATLLLDT---PLDDK 292

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q QY   + +S+TIL N++ND+LDL+ +++G+ +++ +   L+ +LN++   +      N
Sbjct: 293 QKQYASDLRSSATILANVINDVLDLSKIESGMSEVDVTEFNLDSMLNDLITLLGINASAN 352

Query: 666 NIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------ARDN 716
           + R++  S +       +D  +L QI   + SNA+ F+ KG TV + A        + + 
Sbjct: 353 HTRLEYKSKNLDSVMVTSDVTKLRQIVINLASNAIKFTHKG-TVTVTASLKKVAGPSVEE 411

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSI 774
              + SVK+ G  I  D  + +F++F  +      +  G GLGLSI +    + GG V +
Sbjct: 412 NRLVISVKDTGIGIEPDRLEHIFDKFTQSDSSISRRYGGTGLGLSIAKELSQILGGDVKV 471

Query: 775 SSSDEGVTTIN 785
            S     +   
Sbjct: 472 MSRVGEGSCFT 482


>gi|317475518|ref|ZP_07934781.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908349|gb|EFV30040.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1347

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 6/252 (2%)

Query: 539  MLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  +  +  S++AE +      E  ++ +E+K  F  ++S+ELR+PLT I+     +   
Sbjct: 795  VFRYFWIRKSMKAEIQMAQIDKERQKEVNEMKLRFFINISHELRTPLTLILAPLHEMLNK 854

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                   KQ   +E +  ++T LL+LVN +LD    + G+  L      ++ ++ +  + 
Sbjct: 855  VNDRWQHKQ---LELMKQNATRLLHLVNQLLDYRKAELGVFGLKVKPSQVHRIIEKNFRF 911

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                     I+    S+ +    + D   L  I + +LSNA   + +G ++ +       
Sbjct: 912  YEALAQRKGIQYDFCSEVEDKEILCDPNYLELIVNNLLSNAFKHTEEGQSITVSLKDTGN 971

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + +  VK+ G+ IP +  K +F RF          G G+GLS+V+  + LH GH+ + S+
Sbjct: 972  NLLLQVKDTGNGIPLEEQKKIFERFYQVKSSHT--GSGIGLSLVQRLVELHHGHIELDSA 1029

Query: 778  DEGVTTINCRIP 789
            +   +T +  +P
Sbjct: 1030 EGVGSTFSIFLP 1041


>gi|218128694|ref|ZP_03457498.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
 gi|217989149|gb|EEC55464.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
          Length = 1347

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 6/252 (2%)

Query: 539  MLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  +  +  S++AE +      E  ++ +E+K  F  ++S+ELR+PLT I+     +   
Sbjct: 795  VFRYFWIRKSMKAEIQMAQIDKERQKEVNEMKLRFFINISHELRTPLTLILAPLHEMLNK 854

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                   KQ   +E +  ++T LL+LVN +LD    + G+  L      ++ ++ +  + 
Sbjct: 855  VNDRWQHKQ---LELMKQNATRLLHLVNQLLDYRKAELGVFGLKVKPSQVHRIIEKNFRF 911

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                     I+    S+ +    + D   L  I + +LSNA   + +G ++ +       
Sbjct: 912  YEALAQRKGIQYDFCSEVEDKEILCDPNYLELIVNNLLSNAFKHTEEGQSITVSLKDTGN 971

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + +  VK+ G+ IP +  K +F RF          G G+GLS+V+  + LH GH+ + S+
Sbjct: 972  NLLLQVKDTGNGIPLEEQKKIFERFYQVKSSHT--GSGIGLSLVQRLVELHHGHIELDSA 1029

Query: 778  DEGVTTINCRIP 789
            +   +T +  +P
Sbjct: 1030 EGVGSTFSIFLP 1041


>gi|170740045|ref|YP_001768700.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168194319|gb|ACA16266.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 606

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 137/378 (36%), Gaps = 15/378 (3%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +           +D + + V      G +  ++     L       L     +  I    
Sbjct: 198 RLQQASARNALLLDVIDDLVTWHDRGGGVVQASRGALRLAGAAPQTLLGRGLLGRIHVQD 257

Query: 488 SRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---------NAQ 537
              + ++          +T        L  + E      +E     +P         ++ 
Sbjct: 258 RPAFLKAISDAGSLDGPVTVQVRLHTDLAASGEAGRVIWVEMRAHRVPPGARAGAPHHSA 317

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KT 596
            +    +V++  R    + +      +AD +K+ F+  VS+ELR+PL  IIGF+++L   
Sbjct: 318 VVAVTRDVSEQRRHAEEMEQARAEAERADAVKSRFLAVVSHELRTPLNAIIGFSEMLSAE 377

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           + L     +Q +Y   I  S   LL +VN +LDL  + +G          L  L+N    
Sbjct: 378 ANLALPPERQREYAAIIHGSGRHLLEVVNALLDLTKIQSGSFDFAPEPFDLRALVNGCCD 437

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  +  +  I +       L    AD +   Q+   +LSNA+ F+ +G  + +      
Sbjct: 438 LMQLRADQGGIELMRDVPRDLPELTADPRACRQMLINLLSNAVKFTPRGGRITVAVRAIY 497

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR----GQRRGVGLGLSIVESFINLHGGHV 772
                SV + G  I E     + + F              G GLGLS+V   + LH G +
Sbjct: 498 DRIEMSVTDTGVGIAEADLPRLGDPFFQAGDSAAYARMHEGTGLGLSVVRGLVGLHDGEL 557

Query: 773 SISSSDEGVTTINCRIPS 790
            + SS    T +   +P 
Sbjct: 558 LLESSVARGTRVVVVLPL 575


>gi|149927362|ref|ZP_01915617.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105]
 gi|149823854|gb|EDM83079.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105]
          Length = 418

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 10/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    E    AD  K+ F+  +S+ELR+PL  IIGF+ LL+       + +    V  IS
Sbjct: 24  LVLAKEQAESADRAKSEFLATISHELRTPLNAIIGFSKLLEEQLD---DPELRGDVRNIS 80

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S+T L  +++D+L+ + + A  +KL+ S   L+ ++ +V         + N+   ++++
Sbjct: 81  SSATSLHLILSDVLEYSRIQANGLKLDPSPFDLDAMVRQVYSLNRNLALKKNLEFSLVNE 140

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSS 729
            +   FV  D  RL Q+   ++SNA+ F+  G      +  + A+   +    V ++G  
Sbjct: 141 TEGPCFVHGDANRLRQVVQNLVSNALKFTDIGYVKMRLMTSQPAQGRIEVFIEVVDSGIG 200

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I +   + +F RF   +     Q  G GLGL+I +  + L GG + +SS     +     
Sbjct: 201 ISQPALQKLFQRFSQASREINRQYGGTGLGLAICKGLVELMGGRIDVSSELGVGSVFTVS 260

Query: 788 I 788
           +
Sbjct: 261 L 261


>gi|90413299|ref|ZP_01221293.1| Hypothetical sensor protein TorS [Photobacterium profundum 3TCK]
 gi|90325700|gb|EAS42163.1| Hypothetical sensor protein TorS [Photobacterium profundum 3TCK]
          Length = 984

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 7/237 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                KA+  K++F+  +S+E+R+P+  ++G   LL  +    LN +Q++Y+  I+ S  
Sbjct: 460 RNEAEKANRAKSAFLATMSHEIRTPMNGVLGTASLLADT---GLNDQQARYLRVINRSGE 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+++NDILD + ++AG + +      L++L+ +V   + ++    +I++    D  + 
Sbjct: 517 TLLDILNDILDYSKIEAGHLDIRPVDFSLSELVLDVHNMLESRALAKHIQLVNHIDDTMN 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARD-NGDFIFSVKNNGSSIPEDMC 735
           +    D  R+ QI   ++ NA+ F+  G  T+ +    D   + +F V ++G  I E   
Sbjct: 577 NVWLGDVTRIRQILINLVGNAIKFTDHGQVTIAVSMNPDMPDELLFEVTDSGIGIEEAEQ 636

Query: 736 KSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +FN F       +   G GLGL+I    +    G + + S     +     IP +
Sbjct: 637 DILFNAFKQAEEGRKTIGGTGLGLAISRHIVAAMDGEIGVDSIINVGSCFWFSIPLE 693


>gi|53713096|ref|YP_099088.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215961|dbj|BAD48554.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 639

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 124/255 (48%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            + T     D  R++ AL E  +   +++ +K++F+ ++SYE+R+PL  I+GF+D+L + 
Sbjct: 390 YLRTKRLKDDLERSQVALYEAKDRAEESNRLKSAFLANMSYEIRTPLNAIVGFSDVLASG 449

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             GS    Q  Y   I ++S +LL L+NDILDL+ ++A  + L      +  L  +   S
Sbjct: 450 --GSSEEDQRNYFRIIQSNSDLLLRLINDILDLSRLEANKVILTPEDCDVVQLCRQALSS 507

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARD 715
           +     E+  R    +         D QRL Q+   +L+NA  F+ K  T+ L  +  ++
Sbjct: 508 VEMSRRESGNRFVFETKTDSFVLQTDIQRLQQVLINLLTNAAKFT-KNGTITLQFEVEKE 566

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               +F+V + G  IP++  K VF RF       Q  G GLGLSI +  ++  GG + I 
Sbjct: 567 KNRVLFAVADTGCGIPKEKQKQVFERFEKLNEYAQ--GTGLGLSICKLTVDKWGGDIWID 624

Query: 776 SSDEGVTTINCRIPS 790
              E         P 
Sbjct: 625 PDYEDGARFVVSHPL 639


>gi|319787299|ref|YP_004146774.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465811|gb|ADV27543.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 736

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 11/247 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R LT   E  ++A E K+ F+ ++S+E R+PL  + G T+LL T+    L+S+Q + +  
Sbjct: 175 RQLTRATEEAQRASEAKSRFLANMSHEFRTPLNGLAGMTELLSTT---PLDSEQRECLRT 231

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR-IKV 671
           I AS+  L+ LV D+LD++ ++AG +KL+       + ++ +   +  +  +  +  + V
Sbjct: 232 IQASTRSLMGLVEDVLDISAIEAGKVKLSPENFSPREAVDSIGLILQPQARQKQLEYLVV 291

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG--DFIFSVKNN 726
           + D        D   L Q+   ++ NA+ F+  G     V L  A D       F+V + 
Sbjct: 292 VEDAVPSLVHGDAVHLRQVLLNLVGNAVKFTDAGRVRVDVSLAGASDGQVVRLRFAVSDT 351

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPE M + +F  F         +  G GLG +I    +   GG +   + +   +  
Sbjct: 352 GIGIPESMRERLFEAFEQADAGLARRYGGTGLGTTIARGLVEAMGGRIGYENLEPRGSRF 411

Query: 785 NCRIPSK 791
              IP +
Sbjct: 412 WFEIPFQ 418


>gi|312960762|ref|ZP_07775267.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
 gi|311284420|gb|EFQ62996.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
          Length = 1234

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 135/326 (41%), Gaps = 23/326 (7%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
            A+  R     D     A++     DE   +   + +  ++ L   ++            
Sbjct: 454 LASVMRRLAAGDLRTGIASVERG--DEIGIMTRAVRVFQENALRIRVLEAEAEAERQQVQ 511

Query: 544 NVTDSVRAER----------------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
              + + AER                 L +       A++ K+ FV  VS+ELR+PLT I
Sbjct: 512 ASLERMVAERTVTLHHQTEVLEAQAIELIQARNQADSANQAKSDFVATVSHELRTPLTLI 571

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +   + L  + L   + +    +E    ++  L+N VNDILD +  +AG  ++  + + L
Sbjct: 572 LAPLEQLSAATLVPADWRVQ--IERAQRNALRLMNRVNDILDFSKAEAGKFEVCPTLVDL 629

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           N+ +  + +  A         +    D  LG+   D +   +I   ++SNA+ F+  G T
Sbjct: 630 NNAVGVLAEDAAMVAEGKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGT 689

Query: 708 VILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
           V L     D   F  +V+++G  I  +    +F RF    +   R   G G+GL++V+  
Sbjct: 690 VHLAVTPLDGERFELAVQDSGIGIAPEELPLLFQRFSQIDNSATRHYSGTGIGLALVKDL 749

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           + L GG V +SS     +    R+P 
Sbjct: 750 VELMGGEVGVSSEPGRGSCFFVRLPL 775



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 13/156 (8%)

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             T+ +  L+++  +  A  +    + + V     L     DR R+L I   ++SNA   +
Sbjct: 1080 ETVSVAGLVDDALRMSAGSLERQGVTL-VKRIADLPLLPLDRHRVLLILVNLISNA-KHA 1137

Query: 703  SKG-----STVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
             +G       V L A   D      SV +NG+ I  +    +F    S+    ++ G G 
Sbjct: 1138 LEGVADRSPCVTLDACLVDASVLRISVTDNGNGITPEHLARIF----SHGFTTRKEGHGF 1193

Query: 757  GLSIVESFINLHGGHVSISSSD-EGVTTINCRIPSK 791
            GL          GG +++ S       T    IP +
Sbjct: 1194 GLHSCALAAQEMGGRLTVHSDGAGQGATFTLDIPLE 1229


>gi|32400382|dbj|BAC78680.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 156/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 969


>gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain [Bradyrhizobium sp. BTAi1]
          Length = 1299

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  A   + EAL + D  K +F  ++S+E R+PLT ++   + +       L ++Q   +
Sbjct: 341 AYEAERRRAEALAEIDRAKTTFFSNISHEFRTPLTLMLSPLEDMLARADAGLGAEQLAML 400

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  +   LL LVN +LD + ++AG M  ++  + L  L +E+  +  +      +R+ 
Sbjct: 401 NLIHRNGIRLLKLVNTLLDFSRIEAGRMTASFEPVDLAALTSELVSNFRSATDRAGLRLA 460

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSS 729
           + +         DR    +I   +LSNA  F+  G   V +  A D     F+V + G+ 
Sbjct: 461 IEAAPLPQPVYVDRDLWEKIVLNLLSNAFKFTFDGGISVTIGIAADMRHAEFAVHDTGTG 520

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP D    +F RF     A      G G+GL++V+  + LHGG ++  S     +    R
Sbjct: 521 IPPDELPHLFERFRRVAGARGRSYEGSGIGLALVQELVKLHGGEITADSELGRGSVFTVR 580

Query: 788 IP 789
           +P
Sbjct: 581 LP 582



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 123/376 (32%), Gaps = 20/376 (5%)

Query: 415  MFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            + E L  QV +   +            +      A+   +G +  +N           ++
Sbjct: 777  LNERLEAQVSERTAELQAKEARLRTIFEASYTFQALLSGEGTLLDANATSLDAIAAPLDK 836

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
            ++            +      +       I+   +  R+ +Q  L +      ++ + P+
Sbjct: 837  VAGRPFWDT--PWFTGTPGMPELIKSLVDIVIHGEVARREIQLDLPVGGRRWFDFQMRPV 894

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             +    L  +        ER   E+     +  E        V+++  + LT I    DL
Sbjct: 895  RDEAGQLAAIVPEAVELTERRQAEEAFRQAQKMEAIGQLTGGVAHDFNNLLTVIRSSADL 954

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+  +L     +  +YV+ IS ++     L   +L  A        +          L +
Sbjct: 955  LRRRQLPP--ERMRRYVDAISDTADRAAKLTGQLLAFAR----RTPMERQVFDAARHLEQ 1008

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            + + + T +    + I +    +      D  +       +++NA D       + ++  
Sbjct: 1009 IAEMLQTVLGAPAV-IALDLRARPLPVDVDINQFDTALVNLVANARDAMDGRGVLTIRGE 1067

Query: 714  RDNGD--------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
            R +             +V + G  IP +    +F  F +    G  RG GLGLS V  F+
Sbjct: 1068 RVDHGGPTAPEQFVSIAVSDTGCGIPPEQLDRIFEPFFTTKGVG--RGTGLGLSQVYGFV 1125

Query: 766  NLHGGHVSISSSDEGV 781
            +  GG V   S     
Sbjct: 1126 HQSGGRVLTDSEVGRG 1141


>gi|307706667|ref|ZP_07643473.1| two-component sensor histidine kinase [Streptococcus mitis SK321]
 gi|307617911|gb|EFN97072.1| two-component sensor histidine kinase [Streptococcus mitis SK321]
          Length = 449

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 136/380 (35%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I  +      Y        +   +I S DD  + L   +         ++++   
Sbjct: 135 LN-KSILELLQIEDEYELRDLITQVPELMIDSQDDNGEYLSLRVR--------FALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALS--EPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                       E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRGSDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVT 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF        R   G GLGLSI +  I  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSIYGKGSTFTIVLP 432


>gi|315125227|ref|YP_004067230.1| hypothetical protein PSM_A0119 [Pseudoalteromonas sp. SM9913]
 gi|315013740|gb|ADT67078.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 940

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + L    + LR+A+E+K+ F+ ++S+E+R+PLT I+  TD L + +  +   +    
Sbjct: 459 QRTKELQSVAQELREANEVKSQFLANISHEIRTPLTAILAQTDDLISGQYKA--EQLQDE 516

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I   S  L +L+ND+LDL+ ++A  ++LN S   +  L+N+V    + +     + +
Sbjct: 517 LRVIQRQSEHLRSLINDVLDLSKIEANRLELNISCFDMVRLINDVHAMFSPQTKAKGLSL 576

Query: 670 KVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
            + S  G       D  R+ QI   + +NA+ F+ KG  V +  ++ +   +F +++ G 
Sbjct: 577 ILESQLGDTYFTRLDLTRVKQILINLCANAIKFTHKGH-VTIAVSKTDQGLLFCIQDTGI 635

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +     K +F  F    +   RR  G GLGLS+ +    + GG++S+ S  +  +  + 
Sbjct: 636 GMSSSQLKLIFECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQSEFKKGSEFSF 695

Query: 787 RIP 789
            +P
Sbjct: 696 YLP 698


>gi|27364643|ref|NP_760171.1| sensor histidine kinase [Vibrio vulnificus CMCP6]
 gi|320155037|ref|YP_004187416.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|27360788|gb|AAO09698.1| Sensor histidine kinase [Vibrio vulnificus CMCP6]
 gi|319930349|gb|ADV85213.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 1143

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 165/413 (39%), Gaps = 32/413 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +  L++     +  G  I ++    +       G          +  E+ S   +  + 
Sbjct: 656  RYLELFEFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGSRHTSSRIR 715

Query: 522  SD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
             D  V+E    P+P    +++F ++T    AE+AL E NE L +                
Sbjct: 716  PDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKEANETLEERVHLRTRELEQLNKQL 775

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                         K+ F+  VS++L  PL     F   L        + K + ++E    
Sbjct: 776  VVATQRSELESRSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDDESRKLAHHIESALG 835

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L+ D+LD++ +++G + ++     +ND+L+ +    +    +  I   +I   
Sbjct: 836  AAE---DLIGDLLDISRLESGKLDVHVHGFAINDVLSNLNAEFSALAKQQGIEFCMI--P 890

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
               +  +D + L ++    L+NA  +S  G  V L   R        V +NG  I ED  
Sbjct: 891  SSLNVTSDPKLLRRVVQNFLTNAFRYSPNG-KVALGVRRVGERVRIDVWDNGMGIEEDKQ 949

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 950  QEIFEEFSRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWHGRGSVFSITL 1002



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGSRHTSSRIRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKEANETLEE 759


>gi|71907245|ref|YP_284832.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846866|gb|AAZ46362.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 873

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/530 (16%), Positives = 190/530 (35%), Gaps = 53/530 (10%)

Query: 299 ITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                +     ++L  +    + A+ + D        N +           +     +D 
Sbjct: 208 RKARSKAEVNRQLLDTIVSGTSDAVFLKDAQGRYLLANAATAGFVGKAQEEIIGQ--DDT 265

Query: 355 LLEFLRSANKLPEQLNWK-TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP----R 409
            L         PE+        + +  +   + TH++     +G+ +  +VT  P    +
Sbjct: 266 FL--------FPEETARDLMTSDRVIMLAARNTTHEECLRTLDGKEMVFLVTKGPVFDHQ 317

Query: 410 GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG----------PDGRI 456
           G  + +F     +T                         G   +              RI
Sbjct: 318 GRVVGLFGISREITELKRAMAALVASEAALKLAQRQAGIGNWTWNIGTGEHSWSEEVYRI 377

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI---------ITSF 507
              +P    L   E ++       R ++AT  +   + + ++    +         +   
Sbjct: 378 YGHDPRLPPLGYPEVSQYFMPESWRLLSATIEKCLVDGEPYECDVELMSPPATSCWVAVR 437

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKAD 566
            +  +   GT+  L  ++ + +     + +      ++ + V +    L     +   A 
Sbjct: 438 GEATRRPDGTIIDLHGTIQDITERKRSSKELEQYRHHLEELVESRTTELATARASAEAAT 497

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K++F+ ++S+E+R+P+  I+G   L++       +  Q + ++ I++S T LL ++ND
Sbjct: 498 RAKSAFLANMSHEIRTPMNGILGMVHLMRR---AGASPAQLEQLDKIASSGTHLLVIIND 554

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILDL+ ++AG + L     +L++++N     IA       + +         +   D  R
Sbjct: 555 ILDLSKIEAGKLVLEQENFLLSEVVNTALAVIAGAAAAKGLTVNADVSSIPQALRGDPTR 614

Query: 687 LLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           L Q     L NA+ F+ +GS      +++    +    F V + G  +  +    +F  F
Sbjct: 615 LSQALVNYLGNALKFTERGSISLKGSVVEETETDYLLRFEVSDTGIGMTAEQQSHLFIPF 674

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI--NCRI 788
                   R   G GLGL+I +    + GG V +SS     ++     R+
Sbjct: 675 AQADSSTTRKFGGTGLGLAINQHIAQMMGGEVGVSSIPGQGSSFWLTVRL 724



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 94/304 (30%), Gaps = 43/304 (14%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLD----FLVWHRDQAGDILWANISYK 223
            L ++G+   L    L+  +    ++  + L D++       V+ +D  G  L AN +  
Sbjct: 192 FLVINGVAISLLSEVLRKARSKAEVN--RQLLDTIVSGTSDAVFLKDAQGRYLLANAA-- 247

Query: 224 KNTETEGIVFQKAIGESRK-LFKEEIKKRMISSS-----ALEKNFCETVSTLEHGNNKSY 277
                 G   ++ IG+    LF EE  + +++S      A      E       G    +
Sbjct: 248 -TAGFVGKAQEEIIGQDDTFLFPEETARDLMTSDRVIMLAARNTTHEECLRTLDGKEMVF 306

Query: 278 KIVRVLNSF------GEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRY 327
            + +           G  GI+ ++++       L  +   L        +    ++    
Sbjct: 307 LVTKGPVFDHQGRVVGLFGISREITELKRAMAALVASEAALKLAQRQAGIGNWTWNIGTG 366

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
               +     ++  D       P    L     S   +PE  +W+     I       E 
Sbjct: 367 EHSWSEEVYRIYGHD-------PRLPPLGYPEVSQYFMPE--SWRLLSATIEKCLVDGEP 417

Query: 388 HKDTWHL--PNGQTLHV----IVTSNPRGGTI---WMFENLTVQVDLETKYNTLVKVQGE 438
           ++    L  P   +  V      T  P G  I      +++T +     +         E
Sbjct: 418 YECDVELMSPPATSCWVAVRGEATRRPDGTIIDLHGTIQDITERKRSSKELEQYRHHLEE 477

Query: 439 TIDH 442
            ++ 
Sbjct: 478 LVES 481


>gi|332712207|ref|ZP_08432135.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
 gi|332349013|gb|EGJ28625.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
          Length = 520

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 166/453 (36%), Gaps = 23/453 (5%)

Query: 345 FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           FL            +R   ++P         E+     K ++         N + L V +
Sbjct: 56  FLKGKMDGITAARQIREHLRIPIVYLTAYGDEDTLQRAKVTQPFGYVTKPFNERDLRVAI 115

Query: 405 TSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
               +            Q  +E             ++ + + V      G I   N    
Sbjct: 116 EMALQ------------QYQMEQSLQNSQAQLASILNSIDDAVIATTTQGTITFMNAPAE 163

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           +L   + + +  G  + ++    +        + L   I T            +      
Sbjct: 164 ALTGWKASEV-WGRDVTSVFPIVNDLTGNLVKYPLDKVIKTGQVVYLGEHNALIAKDGGR 222

Query: 525 V-LEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           + +  S  PL +        +L F ++++  + E  L +     ++  + ++ FV  V +
Sbjct: 223 IPVGNSASPLKDQLGNVNGVVLAFWDISEEPQTE-MLEQVLAKEQEIQDFRSQFVSTVCH 281

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E R+PL+ I+   +LLK     +   ++ +Y++ I+ S   +  L+ ++L +   + G +
Sbjct: 282 EFRNPLSVILTAAELLKRYGNLATQEQKQRYLKRITISVERMTELMEEVLLIGQAEVGRL 341

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +   + + L     ++   +       N RI   SDG       D + +  I + +L+NA
Sbjct: 342 EFIPTPMNLEQFCQDLIAELCLDQASRN-RIVFTSDGVYTEVCMDDKLIHYIITNLLTNA 400

Query: 699 MDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           + +S     V      D      +F +++ G  I E   K +F  F    + G  +G GL
Sbjct: 401 LKYSPSHEIVTFNLTCDLKQQLVVFRIQDKGIGIAEADQKKIFESFYRAKNVGTIQGTGL 460

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLSIV+  +  H G + ++S     TT   +IP
Sbjct: 461 GLSIVKRCVEQHQGEIELTSEVGVGTTFTIKIP 493


>gi|288555026|ref|YP_003426961.1| sensory transduction histidine kinase [Bacillus pseudofirmus OF4]
 gi|288546186|gb|ADC50069.1| sensory transduction histidine kinase [Bacillus pseudofirmus OF4]
          Length = 469

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               + L   ++++  F+ +VS++LRSPLT+I GF   L    +   + +++ Y   +  
Sbjct: 229 NYMAKELENIEQMRTDFITNVSHDLRSPLTSIKGFLTALLDGTIA--DHRKNHYYTIMKN 286

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  LVND+LD++ +  G + +  +T  L++ +  V   +  ++  +++ I++  + 
Sbjct: 287 ETERLSKLVNDLLDMSQLQHGHITIKPTTYNLSEQIRLVAAKMEPQLQASDLFIELEEEA 346

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                 AD+ R+ Q+   ++ NA+  S     V +  +++      S+++ G  I E+  
Sbjct: 347 GDVHVFADKDRIEQVLINLIENAIHHSPPQKPVYVHLSQEEDKVKVSIEDFGEGIKEEDL 406

Query: 736 KSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             ++ RF      R +++G G+GLSIV+S I+LH   + + S     TT    +P
Sbjct: 407 TYIWERFYKTDKARSKKKGTGVGLSIVKSIIDLHQSSIQVKSEVGIGTTFIFTLP 461


>gi|30022741|ref|NP_834372.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|229129951|ref|ZP_04258917.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4]
 gi|29898300|gb|AAP11573.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|228653642|gb|EEL09514.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4]
          Length = 484

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHTSPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + +N   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|328472228|gb|EGF43098.1| sensor histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 1143

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 162/414 (39%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L+      +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 656  RYLELFVFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGTRHTSSRV- 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI----------- 568
                 V+E    P+P    +++F ++T    AE+AL + NE L +               
Sbjct: 715  RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANETLEERVRARTRELEQLNKQ 774

Query: 569  --------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                          K+ F+  VS++L  PL     F   L      S   K S ++E   
Sbjct: 775  LVAATQRSDLESKSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDSETRKLSAHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G +++N     +ND+L  +    +    +  I   +I  
Sbjct: 835  GAAE---DLIGDLLDISRLESGKLEVNVHGFAVNDVLANLNAEFSALAKQQGIEFTMI-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  +S  G  V L   R  G     V +NG  I E+ 
Sbjct: 890  PSSLMVKSDPKLLRRVVQNFLTNAFRYSPNG-KVALGVRRVQGRVRIDVWDNGMGIEEEK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 949  QQEIFEEFNRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWFGKGSVFSITL 1002



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFVFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKDANETLEE 759


>gi|148658559|ref|YP_001278764.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148570669|gb|ABQ92814.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 718

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 136/357 (38%), Gaps = 25/357 (7%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             +  +++G+ V   +  + L+NP  ++L             +R +A+  S         
Sbjct: 382 AVLRDINDGLVVLDNEYNVVLANPIGQALLNDTSAPQPWLERMRELASRLS--------- 432

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
                     DD R          S    E  I+    A  + T  ++ D       +  
Sbjct: 433 ----------DDGRPVASPEWVFGSPDAEEGQIVYQAVASRVHTDDDLPDLTAI---VLH 479

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                +  +  +  F+  VS+ELR+PL  + GF  L+   + G L S Q  +++      
Sbjct: 480 DITDHKAEERARMDFISMVSHELRNPLHTLNGFVKLVLQERAGPLTSLQQDFLKMADEQI 539

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L + V ++L+     AG + L      L  L+      +  +  +  + +       L
Sbjct: 540 EQLSSRVAELLEYNRFKAGRLALQPDVGDLALLIAGTVNRLKLQAEQQQLALVSHV-THL 598

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D QR+ Q+ + ++ NA+  +  G T+ + A   + +    V + G  IP      
Sbjct: 599 PLCRFDGQRIGQVLTNLIENAIKATPAGGTISVSADVHDQEVRVRVSDTGVGIPASELGK 658

Query: 738 VFNRFVSNAHRGQRRG--VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F RF   A   +  G  +GLGL+I +  +  HGG + + S +   TT    +P  +
Sbjct: 659 IFQRFYQVAKHRRTHGNNLGLGLAICQQIVEGHGGRIWVESEEGVGTTFTFTLPLAD 715


>gi|3123890|gb|AAC38448.1| sensor kinase [Vibrio cholerae]
          Length = 1146

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 154/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYYTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K          +V++ G  
Sbjct: 721 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIAVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 471 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 526


>gi|300172611|ref|YP_003771776.1| two-component sensor kinase [Leuconostoc gasicomitatum LMG 18811]
 gi|299886989|emb|CBL90957.1| Two-component sensor kinase yycG [Leuconostoc gasicomitatum LMG
           18811]
          Length = 623

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 154/402 (38%), Gaps = 34/402 (8%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            ++ I  S+  G        L+ +V+      N         + H+++GV      G I 
Sbjct: 228 MVNHIYGSDELGHLAQSVNELSTRVEESTETVNAERNRLDSVLTHMADGVLAANRRGEIT 287

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           + N A  +     +   + G ++ ++            G      ++ + DD R  L   
Sbjct: 288 IINQAAANFVGV-DREAAIGQNVIDLLRL--------QGKRTLRDMLENLDDFRVDLS-- 336

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            +  +D +L+  +  +      ++ + V      E+          + D  +  FV +VS
Sbjct: 337 -DDSTDILLQAYVSLIKRQSGFISGLVVVLHNITEQQ---------RIDSERRMFVSNVS 386

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT++  + D L    +         ++  +   +  ++ ++ND+L L+ +D G 
Sbjct: 387 HELRTPLTSVRSYVDALAEGAIDD-PEMAQNFLGVVQDETQRMIRMINDLLALSRLDQGT 445

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHE---------NNIRIKVISDGKLGSFVADRQRLL 688
           M +    + LN L N V       +            N  I+     +      D  +  
Sbjct: 446 MDVRLEVVNLNSLFNFVLNRFDMIIESDAKNTDTPNKNYNIQREFTNEDVWVEVDPDKFT 505

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   I++NA+ +S  G T+  +  +     I S+ + G  IP     S+FNRF      
Sbjct: 506 QVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLGIPRKDLDSIFNRFFRVDKS 565

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             R   G GLGL+I +  +    G + + S +   +T    +
Sbjct: 566 RSRAQGGTGLGLAISKEVVERFNGRIWVDSVENRGSTFYISL 607


>gi|254421818|ref|ZP_05035536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196189307|gb|EDX84271.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 614

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 122/257 (47%), Gaps = 18/257 (7%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R  + L E      +A   K+ F+ + S+ELR+PL  +IGF  L+    +     +Q
Sbjct: 346 ELTRKHQELEEAKRQAEEASRRKSDFLANTSHELRTPLNGMIGFLRLVLDD-MADDEEEQ 404

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++    S+  LLNL+ND+LD+A ++A  M+L  S + L +L+ E+ +S  T +    
Sbjct: 405 LEFIQESHNSAIHLLNLINDVLDIAKIEANKMELELSAVSLKELMEEIDKSQRTHIENRG 464

Query: 667 IRIKVISDGKLGSF--VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--------- 715
           +   ++    L      ++ QRL Q+   ++SNA  F+ +G  + + A  +         
Sbjct: 465 LEFNIVLPATLDEIKLYSNYQRLKQVLLNLVSNASKFTHEG-NITITAEINPQSFEFDKK 523

Query: 716 --NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              G    SV + G  +  +    +F  F  V +A   Q  G GLGL+I +  +   GG 
Sbjct: 524 TWPGLVKISVADTGIGVSLEKQDRLFQTFSQVDSARTRQYEGTGLGLAISQRLVEAMGGK 583

Query: 772 VSISSSDEG-VTTINCR 787
           V   S  EG  +T++  
Sbjct: 584 VKFISMGEGLGSTVSFT 600


>gi|37681313|ref|NP_935922.1| sensor histidine kinase [Vibrio vulnificus YJ016]
 gi|37200064|dbj|BAC95893.1| sensor histidine kinase [Vibrio vulnificus YJ016]
          Length = 1156

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 165/413 (39%), Gaps = 32/413 (7%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 609  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 668

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
             +  L++     +  G  I ++    +       G          +  E+ S   +  + 
Sbjct: 669  RYLELFEFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGSRHTSSRIR 728

Query: 522  SD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
             D  V+E    P+P    +++F ++T    AE+AL E NE L +                
Sbjct: 729  PDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKEANETLEERVHLRTRELEQLNKQL 788

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                         K+ F+  VS++L  PL     F   L        + K + ++E    
Sbjct: 789  VVATQRSELESRSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDDESRKLAHHIESALG 848

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L+ D+LD++ +++G + ++     +ND+L+ +    +    +  I   +I   
Sbjct: 849  AAE---DLIGDLLDISRLESGKLDVHVHGFAINDVLSNLNAEFSALAKQQGIEFCMI--P 903

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
               +  +D + L ++    L+NA  +S  G  V L   R        V +NG  I ED  
Sbjct: 904  SSLNVTSDPKLLRRVVQNFLTNAFRYSPNG-KVALGVRRVGERVRIDVWDNGMGIEEDKQ 962

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 963  QEIFEEFSRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWHGRGSVFSITL 1015



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 629 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPPGLIQVGRPIA 688

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 689 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGSRHTSSRIRPDGRVIEVQGNPMPGGGFV 747

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 748 MSFTDITVFRDAEQALKEANETLEE 772


>gi|293373825|ref|ZP_06620169.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631224|gb|EFF49858.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 580

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 11/259 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     +      +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+  S
Sbjct: 323 TKQLREDKKKLEESEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLIIGS 382

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N++  +Y + +  +S +LL L++D+LD++ +++G ++ NY      +L+N  +  
Sbjct: 383 VEQ--NNELKEYADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWC---ELVNHCQNM 437

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           I         ++ IK+    +      D  RL QI   +L+NA+ F+  G ++ L    D
Sbjct: 438 ITLTNRNKTMDVDIKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVD 497

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +FSV + G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + 
Sbjct: 498 EEKQCMLFSVTDTGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIW 555

Query: 774 ISSSDEGVTTINCRIPSKE 792
           I  + +         P K+
Sbjct: 556 IDKNYKNGARFIFSHPIKK 574


>gi|317492549|ref|ZP_07950976.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919299|gb|EFV40631.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 952

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 157/366 (42%), Gaps = 31/366 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+ +    DG   LSN    +                    +
Sbjct: 353 RLEEHEQFNRKIVASAPVGICILRIKDGSNILSNELAHNYISMF--------------TS 398

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             R+       +  ++++     + ++LQ +         + +I            V+V+
Sbjct: 399 EDRHRITRIICEQPSSVVDVITSQNQNLQISFVHSRYRNEDVAI---------CVMVDVS 449

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    SL  + 
Sbjct: 450 ARVKIEESLQELANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK---SLPEET 506

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  +S SS +LL +++DILD + +++  +K+   T     ++  +  +    +    
Sbjct: 507 QRLLAAMSNSSGLLLKIISDILDFSKIESEQLKIEPGTFEPRKVIPHIIGNYLPLVVRKR 566

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    + ++  S   D  R+ Q+ S +LSNA+ F+  G  +IL+    +    F +++
Sbjct: 567 LVMYCFIEPEVPDSVAGDIMRIQQVLSNLLSNAIKFTDTG-CIILQVRVQDFYLEFRIRD 625

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       QR  +G GLGL+I E  ++L  G +++ S     + 
Sbjct: 626 TGLGIPFRDVMKLFDPFFQVGTGVQRHFQGTGLGLAICEKLVSLMDGDIAVESEPGMGSI 685

Query: 784 INCRIP 789
              RIP
Sbjct: 686 FTVRIP 691


>gi|310766624|gb|ADP11574.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
          Length = 909

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L       ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +    LNS Q  Y+  I
Sbjct: 278 ELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTMLNSTQRDYLHTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL+++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +  
Sbjct: 335 ERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILK---AARDNGDFIFSVKNNGS 728
              +  + + D  R+ QI   +L NA+ F+  G+  + ++    + +  +    + + G 
Sbjct: 395 QSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTGI 454

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I +  +N  GG +S  S     +T   
Sbjct: 455 GISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF 514

Query: 787 RI 788
            I
Sbjct: 515 HI 516


>gi|88860786|ref|ZP_01135423.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           tunicata D2]
 gi|88817381|gb|EAR27199.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           tunicata D2]
          Length = 919

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 14/245 (5%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L        +A++ K+ F+ ++S+E+R+PL  +IGF+ L K +    +      Y++ I 
Sbjct: 542 LQLARAQAEQANKAKSRFLANMSHEIRTPLNAVIGFSQLAKQTDDSVV---LGSYIDKIC 598

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LLN+VNDILD++ +++  + L    + L+ LLN V         + +++ ++ + 
Sbjct: 599 LSSNTLLNIVNDILDISKIESEKLVLEQIPLDLHALLNRVSIIFEPIATQKSLQWQLDNQ 658

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGS 728
                 +V D  R+ QI   +  NA+ F+  G  + L A              +V ++G 
Sbjct: 659 LPNQQWYVGDPTRIEQILINLCGNAIKFTHSG-FIKLTARQICLNEQQAQLEIAVSDSGI 717

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT--I 784
            I  +  K +F+ F        RR  G GLGL+I +   +L  G+++I+S ++  +T   
Sbjct: 718 GIKSENLKMLFDAFTQADDSTSRRFGGTGLGLTISQELSHLMQGNITITSKEDEGSTFAF 777

Query: 785 NCRIP 789
           +C +P
Sbjct: 778 HCHLP 782


>gi|91975976|ref|YP_568635.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91682432|gb|ABE38734.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 880

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 115/227 (50%), Gaps = 10/227 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+  +S+E+R+P+  ++G    L  +KL     +Q + VE I +S   LL +++DIL
Sbjct: 340 KSNFLAMMSHEIRTPMNAVLGLASNLLETKLA---PEQRRAVEGIHSSGDGLLKILDDIL 396

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           + + ++AG + +   T    +++ +    I  +     + I+      L  + + D  R+
Sbjct: 397 EYSRLEAGRLSIELITFSPINVVKQSLDMIGPRAAAKGLTIRTDLSDNLPQALIGDPGRI 456

Query: 688 LQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            Q+   +LSNA+ F+  G+ V+    +   R      ++V + G  I  D  +S+F+ FV
Sbjct: 457 RQVLLNLLSNAVKFTPSGTIVVAVNCVSDDRSTARIQWTVTDTGIGIDPDKIESLFDDFV 516

Query: 744 SNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +  +RR  G GLGL+I    I   GG ++++S+    ++ N  +
Sbjct: 517 QADNSIRRRFGGSGLGLAISRRLIEQMGGSINVTSTPGVGSSFNFTL 563


>gi|296446460|ref|ZP_06888404.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296256095|gb|EFH03178.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 352

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 156/372 (41%), Gaps = 32/372 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           DL  +Y     + G  ID L E V V   + RI  +N + RS+  +             +
Sbjct: 3   DLRRRYQG-EALLGLVIDALPEAVFVIDSEARIVAANRSARSVLPSL-----------RV 50

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               +R     D  D    ++     E+      L +  +   E  I PL          
Sbjct: 51  NDPLARSLRSPDVLDALERVLRGGAPEKVIWVERLPV--ECWFEVHIAPLRLDGY----- 103

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                  A  +L +  E+ R+ + ++  FV + S+ELR+PL +++GF + L+        
Sbjct: 104 ----ENAAVASLRDLTES-RRVERMRVDFVANASHELRTPLASLLGFVETLQGPARDDAK 158

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY-STIVLNDLLNEVKQSIATKM 662
           +++  ++  +   +  +  LV+D+L L+ ++   + L   + + L  L+  +  ++    
Sbjct: 159 ARER-FLSIMREQAQRMSRLVDDLLSLSRIEQ-HLHLRPDTPVDLAILVAHIVDTLGPMA 216

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            ++ I +K+ + G +     DR  L ++   ++ NA+ + +    V +  A      +FS
Sbjct: 217 EDSGIELKLDATGPV-VVPGDRDELARVAENLIENAIKYGA--GPVEISLAPLGASAVFS 273

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  I  +    +  RF          + G GLGL+IV+  +  H G ++I S+ + 
Sbjct: 274 VRDHGPGISPEHLPRLTERFYRVDAGKSRAKGGTGLGLAIVKHIVARHRGRLAIDSAPDK 333

Query: 781 VTTINCRIPSKE 792
             T    +P  E
Sbjct: 334 GATFRVFLPLAE 345



 Score = 37.6 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 23/123 (18%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           ++  L  A+ + D    +   NRS   +       L +   ND L   LRS + L     
Sbjct: 17  VIDALPEAVFVIDSEARIVAANRSARSV-------LPSLRVNDPLARSLRSPDVL----- 64

Query: 371 WKTWKENIFSVYKSSETHKDTW--HLPNGQTLHVIVTSNPRGG----TIWMFENLTVQVD 424
                + +  V +     K  W   LP      V +      G     +    +LT    
Sbjct: 65  -----DALERVLRGGAPEKVIWVERLPVECWFEVHIAPLRLDGYENAAVASLRDLTESRR 119

Query: 425 LET 427
           +E 
Sbjct: 120 VER 122


>gi|298527921|ref|ZP_07015325.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511573|gb|EFI35475.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1207

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/513 (15%), Positives = 194/513 (37%), Gaps = 29/513 (5%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
              +  ++L +   I+  +   +AI   +      N ++   +      +  +   + + +
Sbjct: 703  RRSQRERLKNYERIISRINDGMAIVAPDYRYIIVNDAYQREFGKPREEIEGHTVEELVGK 762

Query: 358  FLRSANKLP--------EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             +  +   P        E++  +     +  V K    +   ++  +G            
Sbjct: 763  EVFYSKIKPRLDTAFAGEEVVSEDSFPGLDGVLKYKVMNYYPFYEKDGSV---------- 812

Query: 410  GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
             G +   ++ T Q   E       ++     + + EG+ +     R    N     ++  
Sbjct: 813  AGVVATGKDFTEQKKAEDALRESEELLRTVNETVGEGIVLKDASDRFVHWNKTASDIFGL 872

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLE 527
            +       T              E  G D  +       +   ++   ++  + S   L+
Sbjct: 873  DIEHARGQTPEVFDIKFIHEDGTEYAGDDFPSQHTLRTGEPCNNVIMGIKRNNQSTTWLK 932

Query: 528  YSIIPLPNAQ------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +  P+           +++F ++T+   AE+ L   N+ L+K++  K+     V+++L+
Sbjct: 933  INTRPIFTPGEAKPYLVVVSFSDITERKHAEKILKSMNQQLQKSNVEKDELFSFVAHDLK 992

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +P+   +  T++L          +  + +  +  SS  L  L+ D+L  A V  G++   
Sbjct: 993  APIAGFLSLTEILNKYFDDFSMDELREMLSEMHKSSEGLHALLEDLLQWARVKKGMLVYT 1052

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              ++ LNDL+        +   + +I +      ++ +  AD++ +  +   +L NA+ F
Sbjct: 1053 PESVCLNDLVTAGISLARSVADKKDIDLWNNVPRRM-NLYADQKMIYSVIRNLLFNALKF 1111

Query: 702  SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF--NRFVSNAHRGQRRGVGLGLS 759
            + +G  V + A +        + ++G  + +D    VF  ++  S       +G GLGL+
Sbjct: 1112 TYQGGNVSIHAHKQGSMVKIMIHDDGMGMDQDTAARVFAIDKRKSVKGTDGEKGTGLGLA 1171

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            + + F+  HGG + I S     TT+N   P  +
Sbjct: 1172 LCKEFVEQHGGRIWIDSEPGQGTTVNFTAPYDQ 1204



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 125/423 (29%), Gaps = 56/423 (13%)

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGI--VFQKAIGESRKLFKEEI-KKRM 252
           + +  +    ++     G  L  N ++ +    +    +       + +++ +   +  +
Sbjct: 23  QEILMNAPVGIFTTTPDGRYLSVNNTFARMHGYDSPRQLTDSITDIATQIYADPADRDEL 82

Query: 253 ISSSALEKNFCETVSTLEHGNNKSYKIVR----VLNSFG----EAGIAIDVSKEITVNDQ 304
                           L H + + + +      + +  G      G   D+++   + + 
Sbjct: 83  QGMLEKHGQVTNFECRLRHRSGRIFWVSENISVIKDKDGNITAYQGFNQDITERKQIEEA 142

Query: 305 LTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEI----------DLAFLATNP 350
              + E +     +   +I + D   Y    N +F  L+            D  F  + P
Sbjct: 143 QQESEETINGIIDSSPFSIQMLDPQGYTVCTNPAFKRLFGAVPPPDYTIFNDPNFDRSGP 202

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-QTLHVIVTSNPR 409
             D L+ F +            ++ E+ ++  + S       HLP+    L V       
Sbjct: 203 EYDLLMRFAKGERI--------SFSEHFYNTRRISS------HLPDNPLWLRVEGFPLLD 248

Query: 410 GG-----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                   + M E++T     E       +     I+     V +    GR++  N    
Sbjct: 249 KAGKIKNLVLMHEDITEYKQAEEARIASEQKFKNLIEKCPASVMLLDHQGRVEFVND--W 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            + K   N+L     +           +     ++         +          +    
Sbjct: 307 HIEKFANNKLGKEYFLGRSIHELPGLVSAGVDTEISRVFQGDDVELENVYFPEFAVGGSG 366

Query: 525 VLEYSIIPLPN----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            +    +P+      A  +L   N+T   + E AL +  + LR   E     +   S+  
Sbjct: 367 WVNIRAVPVYQEGQVAGGILLRENITARKKMETALQQSQQKLRSLVENTQDVIY--SH-- 422

Query: 581 RSP 583
            +P
Sbjct: 423 -TP 424



 Score = 71.1 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 128/398 (32%), Gaps = 49/398 (12%)

Query: 122 HHYIKLSKATEKLRKEGQS--FDLVAETQNDCAIKIEGRVSGSCAFLR-----ILSLDGI 174
                  +    L K GQ   F+     ++     +   +S     ++     I +  G 
Sbjct: 74  ADPADRDELQGMLEKHGQVTNFECRLRHRSGRIFWVSENIS----VIKDKDGNITAYQGF 129

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET------ 228
             ++ E     +           + DS  F +   D  G  +  N ++K+          
Sbjct: 130 NQDITERKQIEEAQQESEETINGIIDSSPFSIQMLDPQGYTVCTNPAFKRLFGAVPPPDY 189

Query: 229 --EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLN 284
                      G    L     K   IS S    N    +S+    N    ++    +L+
Sbjct: 190 TIFNDPNFDRSGPEYDLLMRFAKGERISFSEHFYNTR-RISSHLPDNPLWLRVEGFPLLD 248

Query: 285 SFGEAG----IAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFV 336
             G+      +  D+++     +    + +   NL      ++ + D    ++F N    
Sbjct: 249 KAGKIKNLVLMHEDITEYKQAEEARIASEQKFKNLIEKCPASVMLLDHQGRVEFVND--- 305

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
             W I+    A N    E     RS ++LP  ++       I  V++  +   +  + P 
Sbjct: 306 --WHIEK--FANNKLGKEYF-LGRSIHELPGLVSAGV-DTEISRVFQGDDVELENVYFPE 359

Query: 397 ---GQTLHVIVTSNPR------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
              G +  V + + P        G I + EN+T +  +ET      +     +++  + +
Sbjct: 360 FAVGGSGWVNIRAVPVYQEGQVAGGILLRENITARKKMETALQQSQQKLRSLVENTQDVI 419

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
               P+G     +P    L   E   L  G + +++  
Sbjct: 420 YSHTPEGHFTYLSPQVSDLLGYEVQELL-GKNFQDLVH 456



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/345 (11%), Positives = 107/345 (31%), Gaps = 45/345 (13%)

Query: 136 KEGQSFDLVAETQND--CAIKIEGRVSGSCAFLRILSLDGIYSEL--------------- 178
            EG         ++     +++EG V G        +L G   E                
Sbjct: 636 CEGCPLAEQYSDRSGFSARLEVEGFVLGLITVSIPANLAGDLEEQDLFNSLAWTIAQGIQ 695

Query: 179 -AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT-----ETEGIV 232
                   +     +  ++ +   ++  +         +  N +Y++       E EG  
Sbjct: 696 RIRLEKIRRSQRERLKNYERIISRINDGMAIVAPDYRYIIVNDAYQREFGKPREEIEGHT 755

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG--NNKSYKIVRVLNSFGEAG 290
            ++ +G+  ++F  +IK R+ ++ A E+   E       G    K           G   
Sbjct: 756 VEELVGK--EVFYSKIKPRLDTAFAGEEVVSEDSFPGLDGVLKYKVMNYYPFYEKDGSVA 813

Query: 291 IAI----DVSKEITVNDQLTHTYEIL----HNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
             +    D +++    D L  + E+L      +   I + D +      N++  +++ +D
Sbjct: 814 GVVATGKDFTEQKKAEDALRESEELLRTVNETVGEGIVLKDASDRFVHWNKTASDIFGLD 873

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           +            ++F+          ++ +  ++     +            N  T  +
Sbjct: 874 IEHARGQTPEVFDIKFIHEDGTEYAGDDFPS--QHTLRTGEPCNNVIMGIKRNNQSTTWL 931

Query: 403 IVTSNPRGG--------TIWMFENLTVQVDLETKYNTLVKVQGET 439
            + + P            +  F ++T +   E    ++ +   ++
Sbjct: 932 KINTRPIFTPGEAKPYLVVVSFSDITERKHAEKILKSMNQQLQKS 976



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 3/159 (1%)

Query: 412 TIWMFENLTVQVDLE---TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
             W       ++ LE         +K     I  +++G+A+  PD R  + N A++  + 
Sbjct: 686 LAWTIAQGIQRIRLEKIRRSQRERLKNYERIISRINDGMAIVAPDYRYIIVNDAYQREFG 745

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                +   T    +         +      FA      +D    L G L+    +   +
Sbjct: 746 KPREEIEGHTVEELVGKEVFYSKIKPRLDTAFAGEEVVSEDSFPGLDGVLKYKVMNYYPF 805

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
                  A  + T  + T+  +AE AL E  E LR  +E
Sbjct: 806 YEKDGSVAGVVATGKDFTEQKKAEDALRESEELLRTVNE 844


>gi|124266570|ref|YP_001020574.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124259345|gb|ABM94339.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 731

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 125/255 (49%), Gaps = 6/255 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  + +    +RA R L E  E   +A++ K+ F+ ++S+E+R+PL  ++GF  +    +
Sbjct: 310 VQQYRSGRGQLRALRLLQEAKEQAVRANDSKSLFLANISHEIRTPLNGVLGFAQI--GYR 367

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             S+  +  Q    I  S  +L  ++ND+LD++ ++AG + L+ +  +L   L      +
Sbjct: 368 DPSVVPEARQKFARILESGKLLQGILNDVLDMSKIEAGKLLLDPTPTMLRPALERAVDLV 427

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                +  I + ++ D ++    V D  RL QI   +LSNA+ F++ G  V +       
Sbjct: 428 RGFARDKGIALCLMVDRRVPEVIVVDPLRLGQILLNLLSNAVKFTASG-QVDVTVGVSGD 486

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
             + +V+++G  + E+    +F  F        RR  G GLGL+I +  + +  G + ++
Sbjct: 487 KLVINVRDSGLGMSEEQISRLFMAFEQADRSTTRRYGGTGLGLAITKRLVEMMNGSIVVT 546

Query: 776 SSDEGVTTINCRIPS 790
           S     +T + R+P 
Sbjct: 547 SHLGAGSTFSIRLPL 561


>gi|295691206|ref|YP_003594899.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295433109|gb|ADG12281.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 554

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 83/364 (22%), Positives = 153/364 (42%), Gaps = 19/364 (5%)

Query: 436 QGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
               ++ +   + V    DGR  L N     L       L   +      A  +  + E 
Sbjct: 32  LDAVVESVPAMLVVKDGKDGRFVLINRTGEELLGVPREMLIGRSDADFFPADQAAAFAEM 91

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVR 550
           D   L +  +   D+E  S         D  L+   I +P        ++   ++T+  +
Sbjct: 92  DRRVLDSDRVWVIDEEPLSTPHN----GDRWLQTKKIAIPGEGDEKLLLIVSEDITERKK 147

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +  AL    ++ + A   K  F+ ++S+E+R+PL  ++G   +L  ++   L ++Q + +
Sbjct: 148 SAAALEAALQSAQAASIAKTEFLANMSHEIRTPLNGVLGMAQVLAQTE---LTARQREMM 204

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I  S  +L  L++DILDLA V+AG +++  +   L   +     +     H+  +   
Sbjct: 205 DVILNSGRVLNALLSDILDLAKVEAGEVEVETAPFSLRTSIGASAATFEGLAHQKGLTFS 264

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKN 725
           +    G     V D  +L QI + ++SNA+ F+++G   V  +  R      +    V++
Sbjct: 265 LDFGPGFQDRVVGDALKLSQIVNNLISNAVKFTNEGGVAVRAETRRAQDGAVELTVEVED 324

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G     ++  S+F RFV       RR  G GLGLSI   F  L  G ++  S+     T
Sbjct: 325 SGEGFSPEVQASLFERFVQGDGSITRRFGGSGLGLSIALRFAKLMDGDITCQSTPGEGAT 384

Query: 784 INCR 787
               
Sbjct: 385 FRFT 388


>gi|182415664|ref|YP_001820730.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177842878|gb|ACB77130.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 378

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 129/286 (45%), Gaps = 2/286 (0%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           F   +      +E  S   ++Y   P    + ++       +           + L KA+
Sbjct: 91  FITAKNESDDVVEGFSAGGVDYLPKPFQAKEVLVRIQTHLRNQLLTEQQKSLVDQLSKAN 150

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             KN F+   +++LR+PL +I G  + L+   +G L++ Q   V+ I A+S  +L +VN+
Sbjct: 151 AAKNKFLGMAAHDLRNPLASIRGLAEFLRDGVVGPLSADQLDLVQTIHAASQSMLTMVNE 210

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD+AT++AG +K++ +   L DL+ +          + N RI++           D  +
Sbjct: 211 LLDVATIEAGELKIDPAQHNLGDLIEKAVYLANIDAAKKNTRIEITPPASPLYPSFDPAK 270

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + Q+   +LSNA+ +S  GS + +    D  +  F VK+ G  IPE+    +F  F   +
Sbjct: 271 MQQVVDNLLSNAVKYSPPGSRITVVLHGDGRECSFGVKDQGPGIPENERDRLFKDFGRLS 330

Query: 747 --HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               G  +  GLGL+I       H G ++ ++   G       +P 
Sbjct: 331 VKPTGGEKSTGLGLAICRKITEAHHGSITAANLPGGGCEFRVTLPL 376


>gi|162451695|ref|YP_001614062.1| sensory box histidine kinase PhoR [Sorangium cellulosum 'So ce 56']
 gi|161162277|emb|CAN93582.1| sensory box histidine kinase similar to PhoR [Sorangium cellulosum
           'So ce 56']
          Length = 597

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 159/394 (40%), Gaps = 16/394 (4%)

Query: 401 HVIVTSNPRGGTIW-MFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
              +  +    T+    ++L   +++  +      +  G  ++ + EGV V    G I L
Sbjct: 211 RARMQGHDEIATLGGALDDLAESLEVSRRELGGEGERFGAVLESMREGVLVTDEKGDITL 270

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            NPA   L     + +  G     +  + S  +   +   L  A  T   +   +  G  
Sbjct: 271 VNPALSQLLGIRRDPV--GRPPLEVLRSSS-LHELLEEVALARAAATREIEIAPAAPGVA 327

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
                 +L  +  PL           V        A+      LR+ + ++ +F+ + S+
Sbjct: 328 GPPGRRILLVNAAPLALPAQSRGAAGVV-------AVFFDVTELRRIEGLQRNFIANASH 380

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+P+ +I   ++ L    L         +VE I  ++T L  LV+D+LDL+ ++ G  
Sbjct: 381 ELRTPVASIRASSETLLGGALDD-PEAARDFVEVIERNATRLHRLVDDLLDLSRIEGGER 439

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+  T+ L+         +  +  E    +K+          AD + L QI + ++ NA
Sbjct: 440 PLSPGTLDLSVQAEAAVALLRGRAMERGTDVKIDVAPG-TLVAADPRALDQILTNLVDNA 498

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGL 756
           +  +  GS V+++A   NG  +  V+++G  IP      VF+RF            G GL
Sbjct: 499 IHHTPNGSHVVVRARAANGRVVLEVEDDGPGIPAVHQARVFDRFYRVDPGRSRASGGTGL 558

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLSI +  +    G +++++   G       +P+
Sbjct: 559 GLSIAKHLVEAMSGDITVTTGAAGGALFRITLPT 592



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 12/153 (7%)

Query: 284 NSFGEAGIAIDVSKE--ITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           +     G A+D   E       +L         +L ++   + + D+   +   N +  +
Sbjct: 218 DEIATLGGALDDLAESLEVSRRELGGEGERFGAVLESMREGVLVTDEKGDITLVNPALSQ 277

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE----THKDTWH 393
           L  I    +   P   E+L        L E    +        +  ++            
Sbjct: 278 LLGIRRDPVGRPPL--EVLRSSSLHELLEEVALARAAATREIEIAPAAPGVAGPPGRRIL 335

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
           L N   L +   S    G + +F ++T    +E
Sbjct: 336 LVNAAPLALPAQSRGAAGVVAVFFDVTELRRIE 368


>gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1358

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 3/246 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            S RA     ++ EAL K D+ K +F  ++S+E R+PLT ++G  +         L  +Q
Sbjct: 379 QSARAFEEEKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQDTGEPLPPRQ 438

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
                 +  +   LL LVN +LD + ++AG +K  Y    L+    ++  +  + M +  
Sbjct: 439 RDRQLMVHRNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLASAFRSLMEKAG 498

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + ++V           DR+   ++   +LSNA  F+  G  V +    +    + +V ++
Sbjct: 499 LSLQVDCPWLAAPVYVDREMYEKVVLNLLSNAFKFTFVGG-VRVSLRAEADRAVLTVADS 557

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G+ IPE     VF RF  V  A      G G+GL++++  + LHGG +S+ S+    +  
Sbjct: 558 GTGIPEAELPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLSVESAVGQGSRF 617

Query: 785 NCRIPS 790
              +P 
Sbjct: 618 TVTLPL 623



 Score =  217 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 146/393 (37%), Gaps = 35/393 (8%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +   E       ++  + +        V GP    +L+NP +  L   +   L+ G  +
Sbjct: 807  ARARSEAAL-AQERLHAQFMQAPIAMSVVRGPRFVYELANPLYLELLGRQGQALT-GKSV 864

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQ 537
            R                +        F  E   +   +       D   +++  P+  A 
Sbjct: 865  REALPELPEDAPVLKMLEDVFTQGKPFMAEEYCVPLDRKGTGQPEDVYFKFTCQPVRGAD 924

Query: 538  TMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              +T +     +VT+ V A R      E L+ AD+ K+ F+  +++ELR+P+  I     
Sbjct: 925  GQVTDIITVAVDVTEQVLARRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALS 984

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            +L+ S+     +K +++ E        L+ LV+D+LD++ +  G M+L   T+ L  L+ 
Sbjct: 985  MLERSEGD--TAKLARHRETARRQMGNLVRLVDDLLDVSRITRGKMELRKETVDLAVLVQ 1042

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                     +      + V          AD  RL Q+   +L+NA  ++  G  + +  
Sbjct: 1043 NALAVTRPLIEARGHTLSVALIPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSL 1102

Query: 713  ARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR----------GVGLGL 758
            +R+        +  VK+ G  IP DM   VF  FV  A    R                 
Sbjct: 1103 SREGLNGTRQAVLRVKDTGRGIPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTL------ 1156

Query: 759  SIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
              V+  + +HGGH    S      +    R+P 
Sbjct: 1157 --VKRLVEMHGGHAEAFSQGPGQGSEFTVRLPL 1187


>gi|329954548|ref|ZP_08295639.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328527516|gb|EGF54513.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 637

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 8/241 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E AL E  +   +++ +K++F+ ++S+E+R+PL  I+GF+D+L        +  Q  Y E
Sbjct: 401 EAALREAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSDVLSAGDTAIDD--QRGYFE 458

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I A+S +LL L+NDILD++ ++A  + L      +  +  +V  S+ T+   ++ RI  
Sbjct: 459 IIKANSDLLLRLINDILDVSRLEADRVTLTLEKCDVVQVCMQVTASV-TQARRSSNRIVF 517

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSS 729
            S         D QRL Q+   +LSNA  F+ +  T+ LK   D  N   +FSV + G  
Sbjct: 518 ESAADSLEIRTDIQRLQQVVINLLSNADKFT-ENGTITLKLEPDMRNRTALFSVSDTGCG 576

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP +  K VF RF       Q  G GLGLSI +  +   GG + I S            P
Sbjct: 577 IPPEKRKRVFERFEKLNEYAQ--GTGLGLSICKLIVEKWGGRIWIDSQYTRGARFVFTHP 634

Query: 790 S 790
            
Sbjct: 635 L 635


>gi|238796208|ref|ZP_04639718.1| Aerobic respiration control sensor protein arcB [Yersinia
           mollaretii ATCC 43969]
 gi|238719901|gb|EEQ11707.1| Aerobic respiration control sensor protein arcB [Yersinia
           mollaretii ATCC 43969]
          Length = 777

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 146/371 (39%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      
Sbjct: 313 LDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLTGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +  +  L    + D  RL QI   ++ NA+ F+ +G  V+     +N    
Sbjct: 373 VQPKGLKFTMEPELPLPEKVITDGTRLRQILWNLIGNAVKFTQQGEIVVRVRREENDRLT 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +             G G+GL++ +      GG +++ S+
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKSA 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGSGSCFTLTI 503



 Score = 41.5 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260622611|gb|EEX45482.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1476

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 6/238 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            +       +K  E+K  F  ++S+ELR+PLT I G    LK  +   L+ K  QYV+ + 
Sbjct: 931  MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELKERE--KLSPKGLQYVDLME 988

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN +       
Sbjct: 989  KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEVSFTFQLP 1048

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
             +     AD+++L  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 1049 DESIMVWADKEKLSIVIRNIISNAFKFTHSGGSIYVTTGLTDDGKRCFVRVEDNGEGIPQ 1108

Query: 733  DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 1109 SKLTEIFERFSQGENTKNPYYQGTGIGLALSKEIVNLHHGSIYAESPEGQGAVFTVEL 1166


>gi|301164155|emb|CBW23711.1| putative two-component system, sensor kinase [Bacteroides fragilis
           638R]
          Length = 543

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 106/514 (20%), Positives = 211/514 (41%), Gaps = 37/514 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL--QFHNRSFVELWEIDLAFLATNPSN 352
            S +      L   ++IL NL   I + D        + N+       I           
Sbjct: 42  ASADDDYRRFL---FDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVGFSDV 98

Query: 353 DELLE-FLRSANKLPEQL-----NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
           D   E   +   K+ E L      +K  +  + +  K  +T      + +G+    ++ +
Sbjct: 99  DIFGEERGKQYRKIDEDLVRAGIPYKAEERYVTADGKVHDTLVMKSIISSGKLGKWLLVA 158

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 + M+E     +  + +    V+ Q   +  +  G+     +  +      +   
Sbjct: 159 RWEITQLKMYER--ELLAAKEQLEGAVRKQKLALRSIDFGLIYIDRNYLV-----QWEET 211

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
              +            +    +    +  G   F   I +    R      +  +     
Sbjct: 212 GNIKNLVSGRHYTPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRH-----ITHVDHVDF 266

Query: 527 EYSIIPLPNA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           E +  P+ +         +L F ++T+ ++ ER L E  E   +++ +K++F+ ++S+E+
Sbjct: 267 EITATPVYDDTGNEIIGGLLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANMSHEI 326

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIGF+DL+  +       ++ +Y+  +++++ +LL L++DILDL+ ++AG M  
Sbjct: 327 RTPLNAIIGFSDLICQTDDA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDF 383

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +Y+   +N+L+ ++   +  K     ++I             DR RL Q+   +++NAM 
Sbjct: 384 SYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKESGCVINTDRLRLSQVIMNLMNNAMK 443

Query: 701 FSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           F+S+GS + L  +  R   +  F VK+ G  IP D    VF RFV        +G GLGL
Sbjct: 444 FTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF--IKGTGLGL 500

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I    I   GG + + + +        R+P +E
Sbjct: 501 AICRVIIERLGGTIGVETREGKGACFWFRLPVRE 534


>gi|223043250|ref|ZP_03613297.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus capitis SK14]
 gi|222443461|gb|EEE49559.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus capitis SK14]
          Length = 588

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 150/368 (40%), Gaps = 42/368 (11%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--SPGTHIRNIAA 485
             ++   ++   ++ + EGV        +  SN     +    ++    S    I     
Sbjct: 249 ALSSSKSIRDSLLNSMVEGVLGINDQRVVIFSNKMADDIIHFIDDFSKESIEQQIEKTFE 308

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           +    + E +    +   ITS+ +  +     G + ++ D   E+++             
Sbjct: 309 SKGTEFLEIEISTRYYVFITSYINRIQPNGRSGIVVIIRDMTNEHNL------------- 355

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                                 D++K  F+ +VS+ELR+P++ + G+T+ +    +   +
Sbjct: 356 ----------------------DQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPD 393

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    +  +   S  L  LVN++L++A +DA  + +      + +LL+++K     +  
Sbjct: 394 -EIRDSLGVVLDESKRLNRLVNELLNVARMDAEGLSVEKEVQPIKNLLDKMKAKYRMQAD 452

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           +  + ++  S      +  D  R+ Q+ + ++ NA  ++  G  + + A++D    I  +
Sbjct: 453 DLGLTMEFNSGNDHLLWDYDMDRMDQVLTNLIDNASRYTQPGDAIAVTASKDEQYNILYI 512

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G+ I  +  + VF+RF       +R   G GLGL I +  I  HGG + + S     
Sbjct: 513 SDTGTGIAPEHLQQVFDRFYKVDASRKRGKQGTGLGLFICKMIIEEHGGQIDVKSELGKG 572

Query: 782 TTINCRIP 789
           TT   ++P
Sbjct: 573 TTFIIKLP 580


>gi|182677962|ref|YP_001832108.1| integral membrane sensor hybrid histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633845|gb|ACB94619.1| integral membrane sensor hybrid histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 1130

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + QT L    +    R ++ L +  E    A+  K+ FV  +S+ELR+PL  I+G+  +L
Sbjct: 644 HRQTALLRREIEAHKRTDQKLQKAKEVAEAANLAKSRFVVGLSHELRTPLNAIMGYAQIL 703

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     S+ S +   +  +  S+  L  L++ +LD++ ++AG + L+   +   + L+ +
Sbjct: 704 ERDV--SIPSHRRNAIRVMHRSAEHLSGLIDGLLDISKIEAGRLHLSRDEVRFGEFLDHL 761

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     I    I    L + V  D +RL QI   +L+NA+ F+++G  V L+ +
Sbjct: 762 VDMFRLQATAKGIDFVYIRSEHLPAVVFTDEKRLRQILINLLTNAIKFTAEG-RVTLRVS 820

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                  F +++ G  I  +  + +F  F    H G     G+GLGL+I +    + GG 
Sbjct: 821 YRYPVARFEIEDTGMGISRNDQERIFYPFERGQHAGTYAIIGIGLGLTITKLLTEIMGGE 880

Query: 772 VSISSSDEGVTTINCRI 788
           + ++S     +T   +I
Sbjct: 881 ICLTSEIGVGSTFQVKI 897


>gi|110638386|ref|YP_678595.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110281067|gb|ABG59253.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 577

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/365 (21%), Positives = 148/365 (40%), Gaps = 20/365 (5%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR----- 481
            K     K     I+++ + V     + +I   N     +    +  L            
Sbjct: 220 AKLMMEKKRIESLINNMYDPVIGLDENLKILFVNEQAIKIIGISQEELIGHYTQELAIKN 279

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           ++  T  +    ++      AI        K  +G  E     +L  S+ P       L 
Sbjct: 280 DLVRTLVQDLMVAENTPSNKAIPIKIYSNNK--EGYFE---KEILHISVTPTGEQVKQLI 334

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
              +      E          ++ D  K +F+  VS+E ++P+++I     LL+  ++G 
Sbjct: 335 GHVIILRNITE---------YKELDFAKTNFIATVSHEFKTPISSIKMSLQLLENKQIGM 385

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           LN +Q   +E I   +  LL +  ++L++  V++G ++L+       ++L     +  T+
Sbjct: 386 LNEEQQNLLESIKEDANRLLKITGELLNMTQVESGNIQLSILPNDPKEILFYAINATKTQ 445

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             + NI +K+ +   +   +AD ++   +   +LSNA+ +S   ST+ L  A  +     
Sbjct: 446 AEQKNISLKITAPDNIPHVLADNEKTAWVLINLLSNAIRYSYDNSTIQLAIASRDNKVTI 505

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           SVK+ G  I       +FNR+       ++ G GLGL+I + FI   GG +S+ S     
Sbjct: 506 SVKDTGQGIASQYKDKIFNRYFRVPG-TKKEGTGLGLAISKEFIEAQGGSISVDSEFGSG 564

Query: 782 TTINC 786
           +T   
Sbjct: 565 STFTI 569


>gi|307690355|ref|ZP_07632801.1| histidine kinase [Clostridium cellulovorans 743B]
          Length = 1069

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 121/244 (49%), Gaps = 4/244 (1%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS---LNSKQSQY 609
            +      + L K +  KN++  ++S+ELR+PL  I+    L+     G         ++Y
Sbjct: 818  KENKTLYDKLIKYERSKNNYFINLSHELRTPLNVILSTLQLISNLNEGEKYIEKPNLNKY 877

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            V+ +S +S  LL ++ND++D + ++ G  KL  S + +  L+ EV  S+   +  NNI +
Sbjct: 878  VDIMSRNSLRLLKVINDLIDASKIENGDYKLTISEVDIVYLVEEVALSMKDYIESNNIDL 937

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +  D +      DR ++ +    +LSNA  +S+K  ++ +    D+     S+K+NG  
Sbjct: 938  IIDPDIEEKLIECDRTQIERCIVNLLSNATKYSNKNGSIWVTILDDDTKVRISIKDNGIG 997

Query: 730  IPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I       +F RF    +    ++G G+GLS+V+S + LH G + + S +   +     +
Sbjct: 998  IAPKNHDIIFERFGQVNNSESNKKGSGIGLSLVKSLVELHNGTIDLISEEGKGSDFIISL 1057

Query: 789  PSKE 792
            P ++
Sbjct: 1058 PVRQ 1061


>gi|302875025|ref|YP_003843658.1| histidine kinase [Clostridium cellulovorans 743B]
 gi|302577882|gb|ADL51894.1| histidine kinase [Clostridium cellulovorans 743B]
          Length = 1034

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 121/244 (49%), Gaps = 4/244 (1%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS---LNSKQSQY 609
            +      + L K +  KN++  ++S+ELR+PL  I+    L+     G         ++Y
Sbjct: 783  KENKTLYDKLIKYERSKNNYFINLSHELRTPLNVILSTLQLISNLNEGEKYIEKPNLNKY 842

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            V+ +S +S  LL ++ND++D + ++ G  KL  S + +  L+ EV  S+   +  NNI +
Sbjct: 843  VDIMSRNSLRLLKVINDLIDASKIENGDYKLTISEVDIVYLVEEVALSMKDYIESNNIDL 902

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +  D +      DR ++ +    +LSNA  +S+K  ++ +    D+     S+K+NG  
Sbjct: 903  IIDPDIEEKLIECDRTQIERCIVNLLSNATKYSNKNGSIWVTILDDDTKVRISIKDNGIG 962

Query: 730  IPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I       +F RF    +    ++G G+GLS+V+S + LH G + + S +   +     +
Sbjct: 963  IAPKNHDIIFERFGQVNNSESNKKGSGIGLSLVKSLVELHNGTIDLISEEGKGSDFIISL 1022

Query: 789  PSKE 792
            P ++
Sbjct: 1023 PVRQ 1026


>gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
 gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
          Length = 891

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 248 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPPQTDYLQTI 304

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 305 QRSANNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHV 364

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+  IL A +    +    +  + + G 
Sbjct: 365 NQDVPEQVIGDAMRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTAEQVTLVVEIHDTGI 424

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S     +T   
Sbjct: 425 GISESQQTQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVNRGSTFKF 484

Query: 787 RI 788
            +
Sbjct: 485 HL 486


>gi|28899648|ref|NP_799253.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361504|ref|ZP_05774551.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260879137|ref|ZP_05891492.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260895476|ref|ZP_05903972.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|260903316|ref|ZP_05911711.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|28807900|dbj|BAC61137.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088051|gb|EFO37746.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308091609|gb|EFO41304.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308109528|gb|EFO47068.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308112852|gb|EFO50392.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 1143

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 162/414 (39%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L+      +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 656  RYLELFVFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGTRHTSSRV- 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI----------- 568
                 V+E    P+P    +++F ++T    AE+AL + NE L +               
Sbjct: 715  RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANETLEERVRARTRELEQLNKQ 774

Query: 569  --------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                          K+ F+  VS++L  PL     F   L      S   K S ++E   
Sbjct: 775  LVAATQRSDLESKSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDSETRKLSAHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G +++N     +ND+L  +    +    +  I   +I  
Sbjct: 835  GAAE---DLIGDLLDISRLESGKLEVNVHGFAVNDVLANLNAEFSALAKQQGIEFTMI-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  +S  G  V L   R  G     V +NG  I E+ 
Sbjct: 890  PSSLMVKSDPKLLRRVVQNFLTNAFRYSPNG-KVALGVRRVQGRVRIDVWDNGMGIEEEK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 949  QQEIFEEFNRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWFGKGSVFSITL 1002



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFVFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKDANETLEE 759


>gi|121603351|ref|YP_980680.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120592320|gb|ABM35759.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1130

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 12/221 (5%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  ++G T LL  +    L+ +Q  YV  +  SS  LL ++NDILD + +++
Sbjct: 480 MSHEIRTPLNGVVGMTTLLADT---PLDLEQRDYVHTMRISSDQLLGVINDILDFSKIES 536

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKI 694
           G ++L    + L   + E     A +  E  + + V   D   G    D  RL QI   +
Sbjct: 537 GKLELENEPLNLLATIEEACDIGAPRAREKGLELLVDLGDELPGWVRGDVTRLRQILLNL 596

Query: 695 LSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           ++NA+ F+ KG  V+     ++      G   F +K++G  I  D   ++F  FV     
Sbjct: 597 VNNAVKFTEKGQVVVSAHVLEDFSPGRGGLVEFRIKDSGIGIEPDRQAALFQSFVQVDAS 656

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             R   G GLGL+I +  + L GG + + S+    +T    
Sbjct: 657 TTRKYGGTGLGLAICQRLVRLMGGQIGLESAPGDGSTFWFT 697


>gi|323136329|ref|ZP_08071411.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
            sp. ATCC 49242]
 gi|322398403|gb|EFY00923.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
            sp. ATCC 49242]
          Length = 1149

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 108/688 (15%), Positives = 223/688 (32%), Gaps = 72/688 (10%)

Query: 152  AIKIEGRVS-GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD 210
                EGR   G+ A      +               +          ++ +    +   D
Sbjct: 481  TFDDEGRPVHGAGAV---YDITERKLAEEALRESEAEARRQHDELNWIYQNAPIGMCLLD 537

Query: 211  QAGDILWANISYKKNTETE-----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
            +       N    +          G    +   ++     + +++ + +   L+      
Sbjct: 538  RNLHYRRVNRWLAELNGAPMEAHIGRSVSEMAPDASDQIAQLVRQVVATGQPLKNYLIVR 597

Query: 266  VSTLEHGNNKSYK------IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE--------- 310
             ++      +         I       G + +  +++      + L H+           
Sbjct: 598  KNSPNSDAVRFLDASYFPLIDEHGEVSGFSVLLEEITDRKLAEEALRHSESEARKQRDEL 657

Query: 311  --ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
              I  N  + +A  D +   +  N     L +  +         D + +F R A  + E 
Sbjct: 658  DWIYRNAPIGLAYLDLDLRYRRINDWLANLSQRPVEEHIGLSVFDVVPQFARGAKMIKEW 717

Query: 369  LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            +                  +       N              G   + E +T +   E  
Sbjct: 718  ILATGEPVRNLEFSGEMPPNSGVVRHINSSWYPAFSEEGALAGFSVVVEEITERKRAEEA 777

Query: 429  YNTLV---KVQGETI----DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
                    + Q + +    ++   G+A    D R    N     +          G  + 
Sbjct: 778  LRRSEAKARKQRDELKWIYENTPVGLASLDKDLRFHSINRRLAEMNGL-PIEAHIGRTVH 836

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             +    S     S    L   II + +  R      +EL  ++     +    +     T
Sbjct: 837  EVVPDLS-----SKVEQLAHKIIATGEPVR-----NIELEGETAANPGVARYWDESWYPT 886

Query: 542  FVNVTDS-----VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            F +  +      V  E   ++  +ALR+AD  K+ F+  +++ELR+PL  I     LL+ 
Sbjct: 887  FDSNGEIAGFSVVVEEVTESKHLQALREADRRKDEFLATLAHELRNPLAPIKNAIHLLQM 946

Query: 597  SKLGSLNSKQSQ--YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                   ++Q +   +       T L+ LV+D+L++  ++ G ++L    + L  +L++ 
Sbjct: 947  LNHDDPTAEQKRRLALSRAERQVTHLVRLVDDLLEVTRINHGKIELRKEPVELAAILSQA 1006

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                 +++     ++ V          AD  RL Q+F+ +L+NA  F+  G  + + A R
Sbjct: 1007 IDLSHSQIEAGPHQLIVELRSHSLPVEADPVRLAQVFANLLNNAAKFTEAGGRIDVIADR 1066

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG-----------LSIVES 763
            + G+ I  V++NG  IP +M  S+F+ F              G           L++   
Sbjct: 1067 EEGEAIVRVRDNGVGIPPEMASSIFDMFTQIKT---------GVRSGRGGIGIGLALARG 1117

Query: 764  FINLHGGHVSISSSD-EGVTTINCRIPS 790
             + LHGG +   S+     +    R+P 
Sbjct: 1118 IVQLHGGRIEARSAGLGHGSEFIVRLPL 1145



 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 42/399 (10%), Positives = 117/399 (29%), Gaps = 40/399 (10%)

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA--------IGESRK 242
             +  ++  +         D+    L  +  +  +   EG +  ++            ++
Sbjct: 2   DSAELRLFIEFTPIAAAMFDREMRYLAVSPRWMTDFGLEGSILGRSDYDVFPGLPERWKQ 61

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVN 302
           L +  +   +   S  +    +     +    + ++        G    A D+++     
Sbjct: 62  LHQRALAGEIEHPSEDKFTCPDGTIRWKRWERRPWR-HGDGEIGGIIIFAEDITERKEAE 120

Query: 303 DQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLA--------FLATNP 350
           ++   T E L        + I  +D        ++ + +++ +               +P
Sbjct: 121 EEARRTAERLSMAQSAAQIGIFEWDFTSNRTTVDKQYCDIFGLPPGTPLTYAGYLSMVHP 180

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVIVTSNPR 409
            +   ++    A             EN   + ++++     W +  G+ TL         
Sbjct: 181 EDRACIDAQNLA-----VFAAGGHIENECRIIRANDGV-VRWIVAKGEVTLDERDRPTRL 234

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G +W   ++T +   E       +           GV  +       +++     L+  
Sbjct: 235 LGAVW---DITERKRNEAAARETAERLSLVQSAARIGVWEWNMKTGESVASEVLLDLYGL 291

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLS---D 523
             +          +     R+  E +          +  D+ + +    G +  ++    
Sbjct: 292 PRDASFSHADFMAVVHPDDRHLVEENARAAMNGKDVAIADQYRIVRANDGAIRWMTASGG 351

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
              +    P+     M    ++T+  + E AL E +E L
Sbjct: 352 FQFDKDGRPIF---AMGVVYDITERKQVEIALRETSERL 387


>gi|229112136|ref|ZP_04241679.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15]
 gi|296505137|ref|YP_003666837.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|228671459|gb|EEL26760.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15]
 gi|296326189|gb|ADH09117.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 484

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KRLKESIEMQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHTSPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + +N   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|145357869|ref|NP_196633.2| AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase
           [Arabidopsis thaliana]
 gi|122227002|sp|Q3S4A7|AHK5_ARATH RecName: Full=Histidine kinase 5; AltName: Full=Arabidopsis
           histidine kinase 5; Short=AtHK5; AltName: Full=Protein
           AUTHENTIC HIS-KINASE 5; AltName: Full=Protein
           CYTOKININ-INDEPENDENT 2
 gi|74058448|gb|AAZ98829.1| cytokinin independent 2 [Arabidopsis thaliana]
 gi|332004205|gb|AED91588.1| histidine kinase 5 [Arabidopsis thaliana]
          Length = 922

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 90/543 (16%), Positives = 193/543 (35%), Gaps = 74/543 (13%)

Query: 293 IDVSKEITVNDQLTHTYE--ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
           +D  +E     +L    E     N    + + D+   L      F    +     L  + 
Sbjct: 101 LDRQREEAEAKELKIIEEYKFESNEPENVPVLDETSDL------FRRFRQKKRDALVDSK 154

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
             +   EF        + + +  WK+   S+ K  E   +       +    + T   + 
Sbjct: 155 KIEIYEEF--------DTVAY--WKQKALSLEKMLEASTERERRLMEKLSESLKTMESQS 204

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-----RS 465
             +          +L              + +    +     D R       +     + 
Sbjct: 205 APV---------QELTQNLKRAEGFLHFILQNAPIVMGHQDKDLRYLFIYNKYPSLREQD 255

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---------QG 516
           +    +  +  G  ++           +           T     +  L          G
Sbjct: 256 ILGKTDVEIFHGGGVKESEDFKREVLEKGKASKREITFTTDLFGSKTFLIYVEPVYNKAG 315

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
               ++   +E +   +   +      +       E  L +      +    K   +  +
Sbjct: 316 EKIGINYMGMEVTDQVVKREKMAKLREDNAVRKAMESELNKTIHITEETMRAK-QMLATM 374

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+RSPL+ ++G  ++L T+K   L+ +Q Q +  + +S  ++L L+NDILDL+ V++G
Sbjct: 375 SHEIRSPLSGVVGMAEILSTTK---LDKEQRQLLNVMISSGDLVLQLINDILDLSKVESG 431

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKIL 695
           +M+L  +     +++  V Q+ A  + + ++ ++  I+D      V D  R+ QI + ++
Sbjct: 432 VMRLEATKFRPREVVKHVLQTAAASL-KKSLTLEGNIADDVPIEVVGDVLRIRQILTNLI 490

Query: 696 SNAMDFSSKGST-VILKAARDNG------------------------DFIFSVKNNGSSI 730
           SNA+ F+ +G+  + L+   +                               V + G  I
Sbjct: 491 SNAIKFTHEGNVGIKLQVISEPSFVRDNALNADTEEHEQNGLTETSVWICCDVWDTGIGI 550

Query: 731 PEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE+    +F +++     H  +  G GLGL+I +  + L GG ++++S     +T    +
Sbjct: 551 PENALPCLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVSEGSTFTFIL 610

Query: 789 PSK 791
           P K
Sbjct: 611 PYK 613


>gi|323498035|ref|ZP_08103043.1| aerobic respiration control sensor protein ArcB [Vibrio sinaloensis
           DSM 21326]
 gi|323316911|gb|EGA69914.1| aerobic respiration control sensor protein ArcB [Vibrio sinaloensis
           DSM 21326]
          Length = 786

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 155/375 (41%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +     DG     N A   L   +E++L   T  
Sbjct: 144 ERTQLELAERTAL--LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKESQLVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
              +   ++   ++D          +++   +   G       +  E   +P  +     
Sbjct: 202 DVYSKEVAQQIVDTDQRVFSDNQALTYEQWLEYPDG-----HKNYFELRKVPFYSKDGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  +++ 
Sbjct: 257 LGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQM- 313

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q  +++ I+ S+  L N+ NDI+D+   D   ++L  S +   + + E++   A 
Sbjct: 314 --TQEQRNHMQTINVSAITLGNIFNDIIDMDKFDRRKLELYPSALNFENFVAEMESISAL 371

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +     L S    D  RL Q+   ++SNAM F+ +G  V  + A  + G 
Sbjct: 372 MASQKGLRFDLERLSALPSAIEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSAEIEQGY 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            +    V+++G  IPE     +F  +             G G+GL++ +  IN+  G ++
Sbjct: 432 ANITMEVEDSGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDIT 491

Query: 774 ISSSDEGVTTINCRI 788
           +SS +   +T    I
Sbjct: 492 VSSEEGFGSTFTVTI 506



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 60/163 (36%), Gaps = 11/163 (6%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMKDLENEVYQRERTQLELAERTALLRSFIDASPDLIYYRNADG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGE---SRKLFKEEIKKRMISSSALEKNFCETVSTLE 270
                N + ++ T  +             S+++ ++ +       S  +    E      
Sbjct: 176 VFSGCNRAMEELTGKKESQLVGLTPWDVYSKEVAQQIVDTDQRVFSDNQALTYEQWLEYP 235

Query: 271 HGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
            G+   +++ +V          G  G   D+++     + L  
Sbjct: 236 DGHKNYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|291523437|emb|CBK81730.1| amino acid-binding domain sensor hybrid histidine kinase
           [Coprococcus catus GD/7]
          Length = 959

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 12/248 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             + E  E  + A++ K +F+ H+S+++R+P+  IIGFT +   +   + + +    +E 
Sbjct: 568 EEMAELAEHAQAANKAKTAFLSHMSHDMRTPMNAIIGFTGIAMKN---NPSDEVKNCLEK 624

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  SS  LL+L+NDILDL  ++ G +K N     + ++ +         +   +I  K+ 
Sbjct: 625 IDESSEHLLSLINDILDLTRIENGKVKYNPVPADVKNITDSALDITKGFLTNRDINFKIQ 684

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFIF----SVKN 725
             + K+ + +AD  RL  +   ILSNA  F+  G T+  +A      GD        + +
Sbjct: 685 REEAKIPNVLADPARLRDVLVNILSNAAKFTPDGGTITFEARCLEKGGDGYINMRYRISD 744

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  + E+  K VF  F       R Q  GVGLG++IV+ ++++ GG +S+ S     TT
Sbjct: 745 TGIGMSEEFTKEVFEEFAQEDSDVRTQYHGVGLGMAIVKKYVDMMGGTISVQSKKHEGTT 804

Query: 784 INCRIPSK 791
               IP +
Sbjct: 805 FTVDIPLE 812


>gi|238026819|ref|YP_002911050.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
 gi|237876013|gb|ACR28346.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
          Length = 1182

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 148/332 (44%), Gaps = 12/332 (3%)

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           A +   + +E           +          ++G +     +       K  Q  LE  
Sbjct: 390 AAQYRERLQETLAETQQLNEELQVQQEELRVSNEGLEERGRALADSQARLKEQQAELEQT 449

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +  + +Y+                 + V A+ AL+     L ++   K+ F+ ++S+ELR
Sbjct: 450 NVQLEQYA---------QRLERQKDELVTAQEALSANAARLEQSSRYKSEFLANMSHELR 500

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL + +    LL+ ++ G+L  +Q +Y E I AS++ LL L+NDILDL+ V+AG + + 
Sbjct: 501 TPLNSSLILARLLQENRTGNLTDEQVRYAETIHASNSDLLVLINDILDLSKVEAGQITIE 560

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMD 700
             T+ L+ LL  ++++         + + +  + G   + V+D QR+ QI   +LSNA+ 
Sbjct: 561 PETVSLDALLQSLRETFEPMAAAKGLALALERTPGTPATLVSDGQRVTQILRNLLSNALK 620

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGL 758
           F+  G+  +  +A         V+++G  I  D  + +F  F         Q  G GLGL
Sbjct: 621 FTEHGAVTLTISAEGQRMVRLDVRDSGIGIAADKLELIFEAFQQADGSTSRQYGGSGLGL 680

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           SI   F  L GG + ++S     +     +P 
Sbjct: 681 SISREFARLLGGRIGVASEPGKGSVFTLWLPL 712


>gi|166713061|ref|ZP_02244268.1| putative two-component system sensor protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 295

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 47  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 106

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S+  L  +V+D+LDLA ++AG + ++     L DL   ++             +    
Sbjct: 107 SGSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDTGTTTLIFDD 166

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP +
Sbjct: 167 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIPAE 226

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 227 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINSVVGQGSEFYVVLP 284


>gi|114570744|ref|YP_757424.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341206|gb|ABI66486.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 858

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 143/344 (41%), Gaps = 17/344 (4%)

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           +   N   RS+       L  G     + A  + +           A+   F   R    
Sbjct: 363 LVDRNIQRRSIAGKLSIALGLGILGVALQAVLAYFILYRRFVRPLEALTGHFGVARPRAA 422

Query: 516 GT---LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            T   L+ L  S  E  ++     +   T  +  D + A  A  E+   L  A++ K++F
Sbjct: 423 ATNPALQPLLGSRHEIGMLARTLEEQRATNKDAFDLLEARVA--ERTRELEAANQAKSTF 480

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  I+G   +L+T+        Q++ +E    S   L  L+ND+LD++ 
Sbjct: 481 LANISHEIRTPLNGILGLAQVLRTTSRSKQRQDQARMIE---ESGETLTQLLNDVLDMSK 537

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIF 691
           ++AG M+L+   +    L  ++           ++   V  D  L      D  R+ Q  
Sbjct: 538 IEAGKMELSPQVVDPARLFGDMHTLFQASAEAKSLDFSVEIDPSLPERLEFDPLRVRQCL 597

Query: 692 SKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           S +LSNA+ F+SKGS V L A         G     V + G  IP +   ++F+ F  + 
Sbjct: 598 SNLLSNAIKFTSKGS-VQLSARWHRETDQAGLLEIKVCDTGIGIPPEKLDTLFSPFTQSD 656

Query: 747 H--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               G+  G GLGLSI      L GG ++  ++    +T     
Sbjct: 657 AAIAGEFGGTGLGLSIARDLARLMGGDITAEATPGQGSTFTLTF 700


>gi|119486137|ref|ZP_01620197.1| GAF Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
 gi|119456628|gb|EAW37757.1| GAF Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
          Length = 615

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 134/286 (46%), Gaps = 17/286 (5%)

Query: 523 DSVLEYSIIPLPNAQTMLTFVNV-TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           D   ++++  +   + + T V          + L E       +  +K+ F+ + S+ELR
Sbjct: 309 DRFRQWTLAEIDFVRELATHVGTAIAHATLYQELEEARAEAEASSRLKSEFLANTSHELR 368

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  IIGF  L+    +     ++ ++V+    ++  LLNL+ND+LD+A ++AG M+++
Sbjct: 369 TPLNGIIGFLKLVIDGMVDD-PEEEREFVQEGHRAALHLLNLINDVLDIAKIEAGKMEID 427

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAM 699
            + + +++LL EV+Q   T++ +  + + +            A+ QRLLQ+   ++ NA+
Sbjct: 428 LALVKVSELLKEVEQFTKTQVQQKGLNLSIHEHSYSPDLIVYANYQRLLQVMLNLVGNAI 487

Query: 700 DFSSKGST----------VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-- 747
            F+ +G            VIL+     G   F V + G  +P +    +F  F       
Sbjct: 488 KFTHEGGVNISLGVLNQKVILQNQEFPGFVEFRVTDTGIGVPLEKQDRLFKAFSQVDTGY 547

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPSKE 792
             Q  G GLGL I +  +   GG V   S  EG  +T+   +P  +
Sbjct: 548 TRQYGGTGLGLVISQKLVQAMGGSVKFYSLGEGLGSTVTFTVPLYQ 593


>gi|87308804|ref|ZP_01090943.1| PAS protein [Blastopirellula marina DSM 3645]
 gi|87288515|gb|EAQ80410.1| PAS protein [Blastopirellula marina DSM 3645]
          Length = 1373

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 96/504 (19%), Positives = 205/504 (40%), Gaps = 38/504 (7%)

Query: 297  KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            K   + +       +L++  + +   D+   ++ +     + + +  + +      D   
Sbjct: 756  KIAELTEMTADLDSLLYSTDLGVIFLDRELCIRKYTPKIGDAFHLVASDIGRR--IDSFS 813

Query: 357  EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-NPRG---GT 412
              +  A  +          +++ +V ++ E  +        QTL + V    P+    G 
Sbjct: 814  HNIEHAGLM----------DDLNAVLENGEPIEREVRAGQSQTLLLRVLPYRPKQTVQGV 863

Query: 413  IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
            +    +++     E +   + KV  +     ++ + V   +GRI   N   + ++    +
Sbjct: 864  VLTLIDISRLKQAENESRLMSKVFVDA----ADPIVVEDLEGRITDLNAEAQRVYDYSRS 919

Query: 473  RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSVL-EYS 529
             L        +    S    E     L    + + +  ++  QG +   LL+ SVL +  
Sbjct: 920  ELIGQRFELLVPPEDSLRSRELRQRCLEKGGLRNIETVKQDRQGNVFPVLLTLSVLTDEQ 979

Query: 530  IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
              P+  A +     +  ++ +  RA              ++ F+  +S+ELR+PL   + 
Sbjct: 980  GKPVAIASSAKDITDRINAEKEARAAVNN----------RDQFLAMLSHELRNPLGATLT 1029

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             T +L      +L+    +  + I   +     L++D+LD++ V  G +++    + L  
Sbjct: 1030 ATYVL--DLEPNLSPDVREVCDVIQRQTLQAARLLDDLLDVSRVMRGKIEIRPQVVDLRT 1087

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            L+ +V Q++A  +      + +           D  RLLQI   +L+NA  +++ G  + 
Sbjct: 1088 LVEDVTQAVAPLIQAREHNLVIEVPETPVLVEGDPTRLLQIQENLLANAARYTAPGGEIR 1147

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
               +R++G+ +  VK+NGS IP  M + +F  FV +         G+GLGL++V++ + L
Sbjct: 1148 FSLSREDGEAVNRVKDNGSGIPPHMLERIFELFVQSDDTLDRTDGGMGLGLTLVKTLVEL 1207

Query: 768  HGGHVSISSS-DEGVTTINCRIPS 790
            HGG VS  S      +    R+P 
Sbjct: 1208 HGGRVSAHSDGPGKGSEFVLRLPL 1231



 Score = 38.4 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 4/159 (2%)

Query: 287  GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
            G     ID+S+     ++     ++  +    I + D    +   N     +++   + L
Sbjct: 862  GVVLTLIDISRLKQAENESRLMSKVFVDAADPIVVEDLEGRITDLNAEAQRVYDYSRSEL 921

Query: 347  ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
                   ELL     + +  E       K  + ++ ++ +  +     P   TL V+   
Sbjct: 922  IGQ--RFELLVPPEDSLRSRELRQRCLEKGGLRNI-ETVKQDRQGNVFPVLLTLSVLTDE 978

Query: 407  NPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
              +        +++T +++ E +    V  + + +  LS
Sbjct: 979  QGKPVAIASSAKDITDRINAEKEARAAVNNRDQFLAMLS 1017


>gi|298486528|ref|ZP_07004588.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159005|gb|EFI00066.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 645

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 118/252 (46%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++    ++Q
Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TAEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 302 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNRSALQRE 361

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFS 722
           + +++         +   D  R+ QI   ++ NA+ F+ +G   ++   A  DN    F+
Sbjct: 362 LLLELHIQPGLDTVTVTGDPTRIRQILVNLIGNALKFTEQGKVSVVAQWAMLDNDQLHFT 421

Query: 723 --VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V ++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S +
Sbjct: 422 CAVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQE 481

Query: 779 EGVTTINCRIPS 790
              +    +IP 
Sbjct: 482 GSGSVFTLQIPL 493


>gi|257468826|ref|ZP_05632920.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 620

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 167/366 (45%), Gaps = 17/366 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K  T        ++ +S+G+ V   + +I L N A   L   EE+ L   + +  I   
Sbjct: 264 KKIMTEKSKAEAIVESISDGIIVTDKENKILLINNAAEKLLNVEESELLDKSFLTAIP-- 321

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             + Y+          I ++F     SL   +E      +  + I   N + +       
Sbjct: 322 NRKIYDSITEVKNNNDIKSTFKQLEISLNSNVEKNIYCRVFINSIIGKNKENLGIVT--- 378

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L +    L++ D++K+ FV  VS+E R+PLT++    +LL    +G++N  Q
Sbjct: 379 --------LLQDITKLKEIDQMKSDFVSTVSHEFRTPLTSMGMAVELLGDGSVGTINETQ 430

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I   +  L  L+ D+LDL+ +++G   + +    +  ++     S+       N
Sbjct: 431 KELLKVIKEDNERLNFLIRDLLDLSRLESGKTHMKFEECSIKKIVETAVNSLKNFSENRN 490

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSK-GSTVILKAARDNGDFIFSVK 724
           ++I++ +        AD  ++L + + +L+NA+ + S +    +I++A +   + + SVK
Sbjct: 491 VKIEIRNIKDSFLVFADLNKILLVLTNLLTNAIKYKSEEREGNIIVEAFKKGKNIVVSVK 550

Query: 725 NNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IPE+  + +FN+F+    ++ G+  G GLGLSI +  I  HGG + + S     +
Sbjct: 551 DNGKGIPEEYKEKIFNKFIQVKISNDGKIEGTGLGLSICKEIIKAHGGEIWVDSVLNKGS 610

Query: 783 TINCRI 788
                +
Sbjct: 611 IFYFSL 616


>gi|261409329|ref|YP_003245570.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261285792|gb|ACX67763.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 1219

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 171/380 (45%), Gaps = 22/380 (5%)

Query: 427 TKYNTLVKVQGETIDHLSE--GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
             +     +Q + +  LS+  G+ +    GR+++     + L +++            + 
Sbjct: 404 ASFEETTSLQEQLMSQLSQSLGIILNNITGRLRVE----QLLRESQAMTEELQVQSEELQ 459

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                    ++  +     +   +D  +  Q  LE  +  ++  +       Q +    +
Sbjct: 460 TQQEELRRTNENLEEQTNALKRSEDLLQRQQEELEHYNTELVAKTRALEEQVQEVEEKND 519

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R +  L ++ + L    + K+ F+ ++S+ELR+PL +++  + LL  +K G+L+S
Sbjct: 520 EIEKARVQ--LEQQAKQLSITTKYKSEFMANMSHELRTPLNSLLILSQLLSENKDGNLSS 577

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ +Y + I  S + LL ++++ILDL+ VDAG MK+NY  + L D+   V+Q+ A     
Sbjct: 578 KQIEYAQTIYMSGSDLLKMIDEILDLSKVDAGKMKINYEDVQLPDIEAFVEQNFAAVASR 637

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKA 712
            +I + V  +  +  S V D  R+ QI   +LSNA  F++ GS  +           +  
Sbjct: 638 KHINLGVHIEEDIPQSIVTDSHRVKQILRNLLSNAFKFTNSGSVELQVEKADKDKLPVYL 697

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGG 770
             ++    F+VK+ G  IP D    +F  F         +  G GLGLSI      L GG
Sbjct: 698 NAESDYVAFAVKDTGIGIPADKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGG 757

Query: 771 HVSISSSDEGVTTINCRIPS 790
            +++ S +   +     +P+
Sbjct: 758 GITVESEEGKGSCFTLFLPA 777


>gi|319902368|ref|YP_004162096.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319417399|gb|ADV44510.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 294

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 128/241 (53%), Gaps = 5/241 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ- 608
           R  + L + NE   + +++KN+F+ ++++E+R+PL  I+GFT +L    + +L+      
Sbjct: 47  RRVKTLRQMNEVAEETNQLKNAFIANMTHEIRTPLNAIVGFTTMLAE--MDNLDKATRMA 104

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ I+ +   LL LVND+LD + ++A  ++ N   + +N L+ EV  +  T  H   I+
Sbjct: 105 FLKEINENKDSLLQLVNDLLDYSKIEANTLEYNDEEVDVNTLIAEVCMAENTGSHPGGIQ 164

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           ++ +        V DR R  Q+   ++ NA+ F+ KGS  I      N +F F V + G 
Sbjct: 165 VEFVEKLPQCRLVVDRVRFAQVVGNLVRNALKFTEKGSVKIGCRQLSNRNFYFYVADTGC 224

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I E+   ++F RFV   +    +G GLGLSI +S +  +GG + + S     +T    +
Sbjct: 225 GIDEEGRHAIFERFVKMNY--NIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTL 282

Query: 789 P 789
           P
Sbjct: 283 P 283


>gi|32400384|dbj|BAC78681.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 111/682 (16%), Positives = 252/682 (36%), Gaps = 74/682 (10%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
           ++L +    +  + QSF     T+    +  EG+  G  A      + G+     E T+ 
Sbjct: 343 LQLQQTINTMVDQLQSFATEV-TKVARDVGTEGK-LGGQA-----EIAGVKGMWNELTVN 395

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
              ++ +++        +   V      G++       +   + E +  +  I       
Sbjct: 396 VNAMAQNLTTQVRDIAQVTTAV----AQGNLT---RKVEAQCKGEILELKNTINRMVDQL 448

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHG-NNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
           ++   +    +  +            HG       +   +N     G+A++++ ++    
Sbjct: 449 QQFAHEVTKIAREVGSEGRLGGQATVHGVEGTWKDLTENVN-----GMAMNLTTQVREIA 503

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           ++          T A+A  D +R ++          E+    L+   + + +++ L +  
Sbjct: 504 EV----------TTAVARGDLSRKVKA---------EVQGEILSLKITINTMVDRLNTFA 544

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNG-----QTLHVIVTSNPRGGTIWMFE 417
           +   ++  +   + I       +  +  W  L N      Q L + V S           
Sbjct: 545 QEVSKVAREVGTDGILGGQAQVDNVEGKWKDLTNNVNTMAQNLTLQVRSISEVTQAIAKG 604

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +++ +V ++ +  + +++  +T++ +           R+   + A + + +        G
Sbjct: 605 DMSRRVHVDAE--SEIRLLKDTVNDMV---------MRLDEWSLAVKRVARDVGVDGKMG 653

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               ++     R+   +   +  A  +TS    R     T   +     + ++       
Sbjct: 654 GQ-ADVRDIDGRWKEITTDVNTMAQNLTS--QVRAFGDITNAAMEGKFTQITVEASGEMD 710

Query: 538 TMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +   +N   S   E  +  T   EA   A++ K+ F+ ++S+E+R+P+  IIG T L  
Sbjct: 711 ELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTL 770

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    L   Q + +  +   +  LL +++DILD++ ++A  M +      +   +    
Sbjct: 771 DT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNAL 827

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAA 713
           +S+A++ +E  + +       +    V D  RL QI   ++ NA+ F+  G   V +  A
Sbjct: 828 KSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMA 887

Query: 714 RDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           ++         F F+V + G  I  D    +F+ F        R   G GLGLSI +  +
Sbjct: 888 QEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLV 947

Query: 766 NLHGGHVSISSSDEGVTTINCR 787
            L GG + + S     +     
Sbjct: 948 TLMGGRMWVESDFGKGSVFYFT 969


>gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99]
 gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia
           tasmaniensis Et1/99]
          Length = 909

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 12/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L       ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   +LNS Q  Y+  I
Sbjct: 278 ELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTALNSTQRDYLHTI 334

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++AG + L      L   L+EV   +A   HE  + + +  
Sbjct: 335 ERSANNLLGIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNI 394

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNG 727
              +  + + D  R+ QI   +L NA+ F+  G  + ++  +        +    + + G
Sbjct: 395 QSDVPDNIIGDPMRMQQIIVNLLGNAIKFTESG-NIDIRVEKRASSNNRMELEVQIHDTG 453

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +     +F  F        RR  G GLGL I +  +N  GG +S  S     +T  
Sbjct: 454 IGISDKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFW 513

Query: 786 CR 787
             
Sbjct: 514 FH 515


>gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
 gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
          Length = 1441

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K  F+  +S+ELR+PL  IIG +D L     G +N +  + +  I  S   LLNL+ND
Sbjct: 315 EQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLIND 374

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD A++  G + + +  + L  ++++V         +  +++       +   + D  R
Sbjct: 375 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLA-KRGVKLVNDLRENVPFVLGDTGR 433

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+F  ++ N+  F+  G  + + AA  + +   +V + G  IPED    +F  F    
Sbjct: 434 IIQVFHNLIGNSCKFTHSG-NISISAAVKDDEVEVAVADTGIGIPEDKFDQIFLAFEQVD 492

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                +  G GLGL++V+  +  HGG +S+ S +   TT    +
Sbjct: 493 MSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRENQGTTFYFTL 536


>gi|153839345|ref|ZP_01992012.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
 gi|149747136|gb|EDM58124.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
          Length = 1143

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 162/414 (39%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L+      +  G  I ++    +        D  D     +   +   +     + 
Sbjct: 656  RYLELFVFPPGLIQVGRPIADVIRHNAEQGLCGPGDPEDHVRRRVYHLEQGTRHTSSRV- 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI----------- 568
                 V+E    P+P    +++F ++T    AE+AL + NE L +               
Sbjct: 715  RPDGRVIEVQGNPMPGGGFVMSFTDITVFRDAEQALKDANETLEERVRARTRELEQLNKQ 774

Query: 569  --------------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                          K+ F+  VS++L  PL     F   L      S   K S ++E   
Sbjct: 775  LVAATQRSDLESKSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKDSETRKLSAHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++    +L+ D+LD++ +++G +++N     +ND+L  +    +    +  I   +I  
Sbjct: 835  GAAE---DLIGDLLDISRLESGKLEVNVHGFAVNDVLANLNAEFSALAKQQGIEFTMI-- 889

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   +D + L ++    L+NA  +S  G  V L   R  G     V +NG  I E+ 
Sbjct: 890  PSSLMVKSDPKLLRRVVQNFLTNAFRYSPNG-KVALGVRRVQGRVRIDVWDNGMGIEEEK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             + +F  F         +G+GLGL+I +    + G  +S+ S     +  +  +
Sbjct: 949  QQEIFEEFNRGTQVRSDQGLGLGLAISKGIAQVLGHEISMRSWFGKGSVFSITL 1002



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+      +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFVFPPGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++             + +          +    H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAEQGLCG-PGDPEDHVRRRVYHLEQGTRHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  D E       +   E
Sbjct: 735 MSFTDITVFRDAEQALKDANETLEE 759


>gi|320449472|ref|YP_004201568.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
 gi|320149641|gb|ADW21019.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
          Length = 373

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 9/243 (3%)

Query: 552 ERALTEKN--EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           E AL      EAL + ++ +   +  V++ELR+PL+ +  + + L    +        + 
Sbjct: 128 EVALHFNRLAEALERVEQSRVELIGTVAHELRTPLSALQAYAEALADGVMEP-----EKA 182

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            E I      +  LV D+  ++ V++G ++L+   +   +LL +  +          + +
Sbjct: 183 AERIQQEVRAMSRLVRDLSLVSQVESGAVELHPGPLDPKELLEQAAERFRPAFQAKGVAL 242

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +V +   L    AD +R LQ+ + +LSNA+  + +G  V L A R     +FSV++ G  
Sbjct: 243 EVAAPSFLPRVWADAERTLQVLANLLSNALRHTPEGGRVRLGAERTGQAVVFSVEDTGPG 302

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE+    +F RF        R   G G+GL+I +S +   GG + + S     +     
Sbjct: 303 IPEEHLPRIFERFYRIDPSRSRQDGGTGVGLTIAKSLVEAMGGRIWVESQLGRGSVFRFT 362

Query: 788 IPS 790
           +P 
Sbjct: 363 LPL 365


>gi|317488181|ref|ZP_07946753.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|316912726|gb|EFV34263.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
          Length = 713

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 21/309 (6%)

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           + + +G ++  AI  S     ++ Q T E +   +   ++I L  A   ++++    S  
Sbjct: 265 FPDGEGRNIVMAIPVS-----RTAQKTFEGMQSVIGLVAVIVLIVAMLSISWMYYFVSRN 319

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +  +      L      K+ F+  +S+++R+PL  I+G  +L   S   S   K  +++
Sbjct: 320 QKVKIESARVNL------KSDFLTKMSHDIRTPLNAIMGSNELALRSIDDSKTLK--KHL 371

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E    S   LL+++ND+LDL+ +++G M +      L DLL+ +    +    +  + +K
Sbjct: 372 ETSRKSGEYLLSIINDMLDLSRIESGKMAMANRPFALPDLLDSIIVLQSGPAEKKGVVLK 431

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVK 724
             S       F+ D  R+ Q    ++SNA+ F+ +  TV++          +    F+VK
Sbjct: 432 ESSRHLVHECFLGDDTRIKQCLVNLVSNAVKFTPEQGTVLVSCEELAQEGSDSRIRFTVK 491

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + E   K +F  F          + G GLGL IV + ++L GG V + S+ +  T
Sbjct: 492 DTGIGMSESFMKRLFEPFEQEQSSLTSTQIGSGLGLPIVHNLVSLMGGTVHVESAQDAGT 551

Query: 783 TINCRIPSK 791
           T    IP K
Sbjct: 552 TFVVEIPLK 560


>gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 992

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 14/244 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E  + AD+ K+ F+  +S+E+R+PL  +IG + LL  ++   L  KQ  Y+  I +S+ 
Sbjct: 249 AELAKAADKAKSEFLARMSHEIRTPLNAVIGMSHLLLKTR---LTPKQEDYLAKIRSSAD 305

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL ++NDILD + ++AG + +      L  +L +V   ++    E  +   +  +  + 
Sbjct: 306 TLLRVINDILDFSKIEAGGLTIERIPFDLETVLGDVVNIMSLGAAEKQLEFLLSVEDDVP 365

Query: 679 S-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPE 732
              V D  RL Q+   ++ NA+ F+  G  V+L+  R      N    F+V++ G  +  
Sbjct: 366 FGLVGDPLRLGQVLLNLVGNAVKFTESGE-VLLEVRRQPSTSQNARLRFAVRDTGVGLTA 424

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR--I 788
           +  + +F  F         +  G GLGLSI +  + L GG + + S     +       +
Sbjct: 425 EQQEGLFRPFSQADESISRRYGGTGLGLSISQRLVALMGGDLEVRSVPGEGSEFFFSLDL 484

Query: 789 PSKE 792
           P  E
Sbjct: 485 PLSE 488


>gi|166712853|ref|ZP_02244060.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzicola BLS256]
          Length = 1182

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 111/242 (45%), Gaps = 12/242 (4%)

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
             K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+  Q  Y E I  +
Sbjct: 800  HKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYTESIRRA 856

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LL LVND LDLA +++G ++L+     +  L+ EVK  +A    E  +R  +   G 
Sbjct: 857  GAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVKALMAPLAQERGLRFSLEI-GL 915

Query: 677  LGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNNGSSIPE 732
            LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + G  I  
Sbjct: 916  LGDITASGDSTRIRQILLNLLNNAIKFTERG-VVGLKLTTLGSYQGLRFEVADTGPGINA 974

Query: 733  DMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +F RF             G GLGL+I +      GGH+ + S     T     +P
Sbjct: 975  EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1034

Query: 790  SK 791
             +
Sbjct: 1035 LR 1036


>gi|238786791|ref|ZP_04630592.1| Signal transduction histidine-protein kinase barA [Yersinia
           frederiksenii ATCC 33641]
 gi|238725159|gb|EEQ16798.1| Signal transduction histidine-protein kinase barA [Yersinia
           frederiksenii ATCC 33641]
          Length = 911

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 268 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 324

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 325 QRSANNLLCIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLHV 384

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+  IL A +         +  + + G 
Sbjct: 385 NKDVPEQVIGDAMRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTTQQVTIVVEIHDTGI 444

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG ++  S  +  +T   
Sbjct: 445 GISESQQSQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGEINFHSQVDRGSTFRF 504

Query: 787 RI 788
            +
Sbjct: 505 HL 506


>gi|218232960|ref|YP_002366695.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218160917|gb|ACK60909.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 458

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 220 ELGELAHSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 278

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  
Sbjct: 279 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKE 338

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+     D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ 
Sbjct: 339 IQFITTIDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDE 396

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  
Sbjct: 397 GIGIAKEHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILI 454

Query: 787 RIPS 790
           ++P 
Sbjct: 455 KLPL 458


>gi|254442095|ref|ZP_05055571.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256403|gb|EDY80711.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 536

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 116/248 (46%), Gaps = 6/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R  + L  +      A + K+ F+  +S+E R+P+  IIG  ++LK    G  + + 
Sbjct: 139 ERYRLAKDLENEKLKAEAASKAKSEFLAVMSHEFRTPMNGIIGGLEILKNEPAGDSSREI 198

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +   + +    L L+ND+LDL+ +++  ++L    + L+D++     ++  K    +
Sbjct: 199 QSMMRECAFN---QLELINDVLDLSKIESNSVELEIGPVCLSDVITSTMGTLGFKAESKS 255

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I+++   D  +  SF +D +R+ QI   ++ NA+ F+  G   +   +   G   F+V +
Sbjct: 256 IKLESFVDPSVPNSFRSDARRIRQILLNLVGNAVKFTDSGEVKLKVTSSLGGMLEFTVTD 315

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E   K VF  F         + +G GLGL+I +    + GG + + S     + 
Sbjct: 316 TGIGIAEADIKKVFESFSQVDGSYQRRYQGTGLGLTICKRLTRILGGEIRVESQLGVGSK 375

Query: 784 INCRIPSK 791
            +  IP +
Sbjct: 376 FSVTIPIE 383


>gi|194367750|ref|YP_002030360.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
            R551-3]
 gi|194350554|gb|ACF53677.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
            R551-3]
          Length = 1152

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 199/493 (40%), Gaps = 36/493 (7%)

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANKLPEQLNWKTWKENIFSVYK 383
            +  L+     F++ +    +     P +  + + L  ++  + E+   +++ E   S+ +
Sbjct: 516  DERLRAA--PFLDPYAERPSVAGGWPGHVHVGDLLALASRVVGERHARRSFFEQAQSLGR 573

Query: 384  ---SSETHKDTWHLPNGQTL---------HVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
               SS      W     + L          +++TS  RG  + + E + V  +   +   
Sbjct: 574  ELQSSAPADRPWVQFTERLLAASIGAASARLLLTSLLRGSGMDLGEVVAVLDEAGQELRF 633

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
              ++   T++++S GV+V  PD R+   N  ++ ++   +  L  G  + ++    +   
Sbjct: 634  NREILSTTLENISAGVSVVDPDMRLTAWNRRYQDMFGYPDGMLYVGRPVADLIRYNAERG 693

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
               +G D+   I       R       E       V+E     LP    + ++ ++TD  
Sbjct: 694  ELGEG-DIEIQINRRIGYMRAGSPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYK 752

Query: 550  RAERALTEKNEALRKA-----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
             AERAL E NE L +             + K  F+  +S+++  PL     F   L+ S 
Sbjct: 753  HAERALLEANETLEQRVAERSHEAEVAQQSKTRFLAAISHDVLQPLNAARLFASALRDS- 811

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               ++ +Q    E + AS      L++ +LD++ +DAG +        ++ L+ E+    
Sbjct: 812  -DHVSDEQKHLAERVDASLRAAEELLDGLLDVSRLDAGGLHPVIGEFDVSALMRELAAQY 870

Query: 659  ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                    +R+ + +  +     +DR+ L ++    L+NA+ ++ +G  ++L   +   +
Sbjct: 871  TPVAAGRGLRLDLFA--RPAWVRSDRRLLRRVLQNFLANALRYTRQG-RIVLAVRQRGDE 927

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                V + G  IPE   + +F+ F           +G+GLGLSI +    L    ++  S
Sbjct: 928  VELQVWDTGPGIPEHHMRQIFDEFHRYQQPFDWGEQGLGLGLSICQRISRLLDHRLNARS 987

Query: 777  SDEGVTTINCRIP 789
                 +  +  +P
Sbjct: 988  RVGSGSMFSIILP 1000



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 88/303 (29%), Gaps = 32/303 (10%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL---WA 218
             A+LR   L G+      T      L  + +   ++        W       +    + 
Sbjct: 471 GIAWLRPQQLFGMTGWDPLTHGTFWSLLVNAATMMLVSAR-----WRPGVDERLRAAPFL 525

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMIS----------SSALEKNFCETVST 268
           +   ++ +   G      +G+   L    + +R                L+ +       
Sbjct: 526 DPYAERPSVAGGWPGHVHVGDLLALASRVVGERHARRSFFEQAQSLGRELQSSAPADRPW 585

Query: 269 LEHGNN-----------KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH--TYEILHNL 315
           ++               +      +  S  + G  + V  E     +         L N+
Sbjct: 586 VQFTERLLAASIGAASARLLLTSLLRGSGMDLGEVVAVLDEAGQELRFNREILSTTLENI 645

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           +  +++ D +  L   NR + +++      L       +L+ +     +L E  + +   
Sbjct: 646 SAGVSVVDPDMRLTAWNRRYQDMFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEIQI 704

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                  ++   H       +G+ + +   + P GG +  + ++T     E       + 
Sbjct: 705 NRRIGYMRAGSPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKHAERALLEANET 764

Query: 436 QGE 438
             +
Sbjct: 765 LEQ 767


>gi|56696389|ref|YP_166746.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56678126|gb|AAV94792.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 737

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 97/567 (17%), Positives = 209/567 (36%), Gaps = 36/567 (6%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
           ++   +S       E  + LE       + +           A          +  ++  
Sbjct: 31  EQATDASGAAYAQFERAALLEEEVRNRTRDLERALDLLNDSNARLAEANRATEEARSNLA 90

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL--PE 367
             +  +    A+FD +  L   N  F               +  + ++ +  +  L  PE
Sbjct: 91  NAIETVQEGFALFDPDERLVMCNSRFGLHMPDIRDRFRPGITFRQYVDLVSGSRYLSLPE 150

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET 427
               + W       +K      +   +   + + V     P GGT+ +  +++  + LE 
Sbjct: 151 NKTPRDWAAQRIRRHKDDHVIFNV-RMVGSRWVQVSEHRTPDGGTVILQTDVSDIMRLER 209

Query: 428 KYNT-----LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +          ++   T++HL +GV +F   GR+   N     +      R S G    +
Sbjct: 210 QERDRMLDDQARLIRATLEHLDQGVCIFDNQGRLAGWNQRVGEMLSIPARRFSMGVRFFS 269

Query: 483 IAATCSRY--YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           +    +R   Y+     D   A I +  D R  +   +    +  L      +P+   ++
Sbjct: 270 LFEGFARNSSYSSGITEDTIRAWINA-TDSRPPIGFEIRQGENKTLSVHAQEMPDRGFVI 328

Query: 541 TFVNVTDSVRAERALTEKNEALR------------------KADEIKNSFVQHVSYELRS 582
           +F +V+    A RA+ + NE L                   +A+  K+ FV   S++L  
Sbjct: 329 SFSDVSAERAAVRAIRQANELLEARVAERTLELADALSEAERANASKSRFVAAASHDLLQ 388

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL+    +   + + + G   S+  Q  +    S   +  ++  +LD++T+D+G  +++ 
Sbjct: 389 PLSAAKLY---MASIEPGQDPSQTHQIADKARRSLDSVETILEALLDISTLDSGKAEVHR 445

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
           + + L  +L ++ + +A       + ++VI        ++D   L +I   ++ NA+ ++
Sbjct: 446 APVPLGVILAQLAEELAPTARAKGLDLRVI--PSSAMVLSDATYLRRIAQNLIVNAIRYT 503

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIV 761
            KG  +++   R        V + G  I  +    +F  F           G+GLGL+IV
Sbjct: 504 RKG-KIVVGVRRRGKSVRLEVWDTGPGIAAEQRDIIFREFQRLDAAASAAEGMGLGLAIV 562

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           +    L G  + + S+    +     +
Sbjct: 563 DRACALLGHPLDLVSTVGRGSGFLVEL 589



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 73/291 (25%), Gaps = 22/291 (7%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISY-KKNTE 227
            +LD +    A      +      S      +++       D    ++  N  +     +
Sbjct: 63  RALDLLNDSNARLAEANRATEEARSNLANAIETVQEGFALFDPDERLVMCNSRFGLHMPD 122

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV----- 282
                                +   +  +   +++          ++  + +  V     
Sbjct: 123 IRDRFRPGITFRQYVDLVSGSRYLSLPENKTPRDWAAQRIRRHKDDHVIFNVRMVGSRWV 182

Query: 283 ------LNSFGEAGIAIDVSKEITVNDQLTH---------TYEILHNLTVAIAIFDQNRY 327
                     G   +  DVS  + +  Q                L +L   + IFD    
Sbjct: 183 QVSEHRTPDGGTVILQTDVSDIMRLERQERDRMLDDQARLIRATLEHLDQGVCIFDNQGR 242

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           L   N+   E+  I     +       L E     +     +   T +  I +       
Sbjct: 243 LAGWNQRVGEMLSIPARRFSMGVRFFSLFEGFARNSSYSSGITEDTIRAWINATDSRPPI 302

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE 438
             +     N +TL V     P  G +  F +++ +           ++   
Sbjct: 303 GFEIRQGEN-KTLSVHAQEMPDRGFVISFSDVSAERAAVRAIRQANELLEA 352


>gi|229102610|ref|ZP_04233314.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28]
 gi|228680837|gb|EEL35010.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28]
          Length = 444

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 206 ELGELAHSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVEHLTEEEI 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     +  
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKKQ 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+     +      + DR RL QIF  I+ NA+ +S +  TV ++A ++ G  +  VK+ 
Sbjct: 325 IQFINTIER--IELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVIKVKDE 382

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LH G +SI S +   TTI  
Sbjct: 383 GIGIAKEHLPYIEQSFYQINNHAA--GAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILI 440

Query: 787 RIPS 790
           ++P 
Sbjct: 441 KLPL 444


>gi|229115491|ref|ZP_04244897.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3]
 gi|228667904|gb|EEL23340.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3]
          Length = 444

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 206 ELGELAHSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVEHLTEEEI 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     +  
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKKQ 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+     +      + DR RL QIF  I+ NA+ +S +  TV ++A ++ G  +  VK+ 
Sbjct: 325 IQFINTIER--IELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVIKVKDE 382

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LH G +SI S +   TTI  
Sbjct: 383 GIGIAKEHLPYIEQSFYQINNHAA--GAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILI 440

Query: 787 RIPS 790
           ++P 
Sbjct: 441 KLPL 444


>gi|218531622|ref|YP_002422438.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|218523925|gb|ACK84510.1| histidine kinase [Methylobacterium chloromethanicum CM4]
          Length = 1071

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 594 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 651

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     +  +    
Sbjct: 652 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRP 711

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+ +G  V L+        +F++++ G  IPE 
Sbjct: 712 EILPAVVATDEKRLRQILLNLLSNAIKFTPEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 770

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F   +        G GLGL+I      + GG +++ S     T    R+
Sbjct: 771 DLGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRL 827


>gi|253680916|ref|ZP_04861719.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium botulinum D str. 1873]
 gi|253562765|gb|EES92211.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium botulinum D str. 1873]
          Length = 463

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 123/248 (49%), Gaps = 5/248 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  +    L   +E L K +++K  F+  +S+ELR+PLT+I G+T  +  S     N 
Sbjct: 218 NDEFGKLADTLNYMSEELLKNEKLKTEFIASISHELRTPLTSIKGWT--IALSLCDPNNK 275

Query: 605 KQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           K+    ++ I   +  L +LV ++LD + + +G + L    + + +LL  +++ ++ +  
Sbjct: 276 KEFEDGLKIIEEETDRLSSLVEELLDFSKLSSGKITLKKDFVNIYELLIYLQKQLSPRAS 335

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           ++NI + +     + +   D  RL Q+F  IL N++ F+  G  + +  +  + + I ++
Sbjct: 336 KDNINLFLEYKCTVPNIYVDVNRLKQVFMNILDNSLKFTPNGGEIKIALSCTDDNVIINI 395

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           K+NG  IP +    V  +F    +   +   G+GLSI    I+LH G + I S     T 
Sbjct: 396 KDNGCGIPPEDLPRVTEKFYKGKNSNSKN--GIGLSICSEIISLHNGTLEILSEQYKGTE 453

Query: 784 INCRIPSK 791
           +   +P +
Sbjct: 454 VIITLPLE 461


>gi|148979053|ref|ZP_01815298.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
 gi|145962026|gb|EDK27314.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
          Length = 1129

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 12/290 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ +         Q + +  +  +     + + ++N+ L
Sbjct: 403 INTERKDEIGRLAVSFERMQRSIRD-------KMQLIKSQNDELEDNL--KTIQKQNDEL 453

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+++K+ F+   S+ELR+PL  ++G  + L +   G + + Q   ++ I  S   L  
Sbjct: 454 QLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGPIPANQKYQLDIIINSGQRLAT 513

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LV+D+LD   +  G + +  S + L+   + V +     +    IRI       LG   +
Sbjct: 514 LVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRIINQVPSDLGLVSS 573

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D QRL Q+   ++ NA+ ++S+G  +++ A+  + +    V + G  IP +  + +F   
Sbjct: 574 DPQRLEQVMYNLVGNAIKYTSEG-KIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPL 632

Query: 743 VSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +         R+G GLGLSI    I L GG + +SS     TT +  +P 
Sbjct: 633 IQAGQDASNYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPL 682


>gi|163852796|ref|YP_001640839.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163664401|gb|ABY31768.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 1071

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 594 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 651

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     +  +    
Sbjct: 652 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLTFRFTRP 711

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+ +G  V L+        +F++++ G  IPE 
Sbjct: 712 EILPAVVATDEKRLRQILLNLLSNAIKFTPEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 770

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F   +        G GLGL+I      + GG +++ S     T    R+
Sbjct: 771 DLGRIFEPFERGSMPAARAAPGTGLGLTIAHLLSQVMGGEITVESRVGEGTCFRVRL 827


>gi|317131254|ref|YP_004090568.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
 gi|315469233|gb|ADU25837.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
          Length = 460

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 158/366 (43%), Gaps = 24/366 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +  +  +   + ++++SEG+        I + N      +++    +            
Sbjct: 115 ERARSERERADDMLNNMSEGLVALDNALTIVVMNKRAGEFFQSGNANM-----------L 163

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                + +    L  A   + +  +  +    +      L+ S+  +           V 
Sbjct: 164 GQNLLHLTHMPKLIEAATKTAETGKPDVFDWEDTERGLTLQISVSAVNGLDEGNRNGVV- 222

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L     A+R+ ++I++ FV + S+EL++PLT I GF +L++   +   + + 
Sbjct: 223 -------LLISDVTAVRRTEQIRSEFVANASHELKTPLTAIKGFVELMEADIITEPD-QI 274

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I   +  ++ L+NDIL L+ +++      ++ + +        +S+A   H+ N
Sbjct: 275 KSYLGRIRKETERMIELINDILHLSELESVNADTGFTAVSMKLTAQRAAESVALSAHKRN 334

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + ++V  +G +G+  A+  R++Q+   ++ NA+ ++     V +     +G+  F V + 
Sbjct: 335 VSVQV--EGDVGTVRANPDRMMQLALNLIDNAVKYNKPDGNVRVTIISKDGNVHFCVNDT 392

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +  + VF RF         ++ G GLGLSIV+  + L+ G + I S     T+I
Sbjct: 393 GVGIPPEARQRVFERFYRVDKGRSRRQGGTGLGLSIVKHIVGLYKGRIEIESIVGEGTSI 452

Query: 785 NCRIPS 790
              +P+
Sbjct: 453 TVILPA 458


>gi|123441097|ref|YP_001005086.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088058|emb|CAL10846.1| two-component regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 944

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLHV 393

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+  IL A R         +  + + G 
Sbjct: 394 NKDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S  +  +T   
Sbjct: 454 GISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|332559988|ref|ZP_08414310.1| hypothetical protein RSWS8N_13045 [Rhodobacter sphaeroides WS8N]
 gi|332277700|gb|EGJ23015.1| hypothetical protein RSWS8N_13045 [Rhodobacter sphaeroides WS8N]
          Length = 520

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 183/484 (37%), Gaps = 23/484 (4%)

Query: 65  ICDQLSKYHSLLTENNCL--TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFH 122
           +  +  +    +  ++      ++DG+       G        P      L    +L   
Sbjct: 29  LQTRAGRRPEGVFSDSQAGTVFLFDGETLLDATPGARAILALSPARGGPWLRLLAYLVPR 88

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
               L     +L ++G+ F L A       + +   + G     R+   D   +E     
Sbjct: 89  FP-DLEARLSRLARDGR-FTL-ASAAEGEPLLLMAEMRGG--ITRLTIDDPSSAERPRLD 143

Query: 183 -LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  + L+  +   +        ++W     G+++WAN +Y           +       
Sbjct: 144 HLSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLHEAAKRLPPDRDLSWPLP 203

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID----VSK 297
           +LF          +++ +    +       G ++ + +    +  G    A+     V  
Sbjct: 204 RLFD--------RAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E T+ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS    LE
Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            LR    +PE  ++ +W+  I  + K++ +  + +TW LP+GQT  VI   +P G    M
Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALM 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           FE+++ ++    +Y   +++    +D + + +AVF P G + ++N A+ +LW  +     
Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALWGHDPVETV 435

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G     +        + S  W      + +    R    G + L    ++     PL  
Sbjct: 436 GGGAAVQLCEQWRARSSPSPIWVEAERFLAAL-GPRDPWSGEIRLEDGRLVSCRFAPLTG 494

Query: 536 AQTM 539
             T+
Sbjct: 495 GATL 498


>gi|315922858|ref|ZP_07919098.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase
           [Bacteroides sp. D2]
 gi|313696733|gb|EFS33568.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase
           [Bacteroides sp. D2]
          Length = 505

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 11/259 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     +      +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+  S
Sbjct: 248 TKQLREDKKKLEESEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLIIGS 307

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N++  +Y + +  +S +LL L++D+LD++ +++G ++ NY      +L+N  +  
Sbjct: 308 VEQ--NNELKEYADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWC---ELVNHCQNM 362

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           I         ++ IK+    +      D  RL QI   +L+NA+ F+  G ++ L    D
Sbjct: 363 ITLTNRNKTMDVDIKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVD 422

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +FSV + G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + 
Sbjct: 423 EKKQCMLFSVTDTGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIW 480

Query: 774 ISSSDEGVTTINCRIPSKE 792
           I  + +         P K+
Sbjct: 481 IDKNYKNGARFIFSHPIKK 499


>gi|299146108|ref|ZP_07039176.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
 gi|298516599|gb|EFI40480.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
          Length = 660

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 11/259 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     +      +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+  S
Sbjct: 403 TKQLREDKKKLEESEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLIIGS 462

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N++  +Y + +  +S +LL L++D+LD++ +++G ++ NY      +L+N  +  
Sbjct: 463 VEQ--NNELKEYADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWC---ELVNHCQNM 517

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           I         ++ IK+    +      D  RL QI   +L+NA+ F+  G ++ L    D
Sbjct: 518 ITLTNRNKTMDVDIKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVD 577

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +FSV + G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + 
Sbjct: 578 EKKQCMLFSVTDTGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIW 635

Query: 774 ISSSDEGVTTINCRIPSKE 792
           I  + +         P K+
Sbjct: 636 IDKNYKNGARFIFSHPIKK 654


>gi|294664051|ref|ZP_06729455.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606178|gb|EFF49425.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 1092

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 158/377 (41%), Gaps = 23/377 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           ++   K           ID L  G+ ++ P+   + L N          +  L  G    
Sbjct: 378 LNSAEKLIEAEHFSEAIIDTLPVGIGIYAPETDSVVLEN-------GVAKRMLGHGHDSA 430

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +      R            + I    D  +     + + S     +   P+     +L 
Sbjct: 431 DFYRHVIRERTAEAVPGTHHSFIEVQWDIAEGQSSYIGVASSQT-RFGGRPV----ILLG 485

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V++ +    E  L +  +   +A+  K+ F+  VS+E+R+PL   +G  +LL  S LG 
Sbjct: 486 LVDINEHKANEMLLIQAKQTADEANRAKSIFLAIVSHEIRTPLHGAMGHLELLARSPLGF 545

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +Q+++V+ I  S   LL+LVND+LD   ++A  +K+N   +  N++     +S    
Sbjct: 546 ---EQAEWVDMIRRSFDALLSLVNDLLDSTKLEANALKINPMPMSPNEVAERCARSFGAS 602

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD- 718
           + +N++    ++D  L   V  D QRL QI   +L NA+ F+ +GS  +  +  +  GD 
Sbjct: 603 ILQNDVAFYCMTDPDLDGVVEGDDQRLAQILQNLLGNAVKFTERGSIMISSRCLKQQGDT 662

Query: 719 --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
               F V + G  IP  M  ++F           RR  G GLGL +  +   L GG +S+
Sbjct: 663 IWARFEVADTGIGIPASMQSAIFKPLAQADDSISRRFGGTGLGLFLCRNLSRLMGGRISV 722

Query: 775 SSSDEGVTTINCRIPSK 791
           SS     +     +P K
Sbjct: 723 SSEPGKGSVFRVDLPFK 739


>gi|258563454|ref|XP_002582472.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704]
 gi|237907979|gb|EEP82380.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704]
          Length = 2359

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 14/250 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             AE       +   +A + K+ F+ ++S++LR+P+T +IG ++LLK +   SL+ +Q  Y
Sbjct: 1867 EAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELLKQT---SLDRQQDVY 1923

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            VE I   +  LL L+NDILD + ++AG MK+    + L   + EV +++     +  +  
Sbjct: 1924 VESIRVCADTLLTLINDILDFSKLEAGKMKVTTVPLNLRQTIAEVVRALRYTHRDRGLET 1983

Query: 670  KVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSV 723
                D        + D  RL QIF  +LSN+  F+ KGS TV  K A ++ +      +V
Sbjct: 1984 IEDFDDIDPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVAEESENTIRVTCTV 2043

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  I  D    +F  F            G GLGLSI ++ I  + GG + + S    
Sbjct: 2044 ADTGIGISNDHMARLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLHSDVGV 2103

Query: 781  VT--TINCRI 788
             T  T     
Sbjct: 2104 GTKVTFTVTF 2113


>gi|237719541|ref|ZP_04550022.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4]
 gi|229451401|gb|EEO57192.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4]
          Length = 660

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 11/259 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     +      +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+  S
Sbjct: 403 TKQLREDKKKLEESEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLIIGS 462

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N++  +Y + +  +S +LL L++D+LD++ +++G ++ NY      +L+N  +  
Sbjct: 463 VEQ--NNELKEYADIVQTNSNLLLQLISDVLDISRLESGKLQFNYEWC---ELVNHCQNM 517

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           I         ++ IK+    +      D  RL QI   +L+NA+ F+  G ++ L    D
Sbjct: 518 ITLTNRNKTMDVDIKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVD 577

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +FSV + G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + 
Sbjct: 578 EKKQCMLFSVTDTGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIW 635

Query: 774 ISSSDEGVTTINCRIPSKE 792
           I  + +         P K+
Sbjct: 636 IDKNYKNGARFIFSHPIKK 654


>gi|171058133|ref|YP_001790482.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775578|gb|ACB33717.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 945

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 153/395 (38%), Gaps = 38/395 (9%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +   E K          T+D L + +     DGRI+    +         +     T  
Sbjct: 400 RRKRAEHKLRDTTIRLEATLDALPDLMFRIDRDGRIEEFRSSATDQLYASPSAFMGKTFR 459

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +    +R  +E+      +         R +             E S+  +  A    
Sbjct: 460 EVVPEPAARVLDEALEDAARSG------SSRGATYAIDIGAEQRWFEVSMSAMAGADDRP 513

Query: 541 TFV-----NVTDSVRAERALTEKNEALRKA------------------DEIKNSFVQHVS 577
                   ++T+  RAE+ L +  + L                     +  K++F+ ++S
Sbjct: 514 AHFILLLRDITERKRAEQTLDDYRQGLEAMVGERTAQLNEATRRAEAANVAKSAFLANMS 573

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +E+R+PL  I+G + L++   L  L   Q++ ++ + A++T LL ++N ILDL+ +DAG 
Sbjct: 574 HEIRTPLNAIVGMSHLIR---LAGLPPAQTERLDKLKAAATHLLEILNAILDLSKIDAGK 630

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             L    + +  ++      +  +    ++R+    D    S V D  RL Q      +N
Sbjct: 631 FTLEEIPLRVESIIANTLSMLDDRARAKSLRLTSEVDRMPRSLVGDPTRLQQALLNYANN 690

Query: 698 AMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
           A+ F+  GS  +    ++   ++    F V++ G  I +    ++F+ F        RR 
Sbjct: 691 AIKFTDAGSVTVRARLVEQHAEDVLVRFEVEDTGIGIDDAAIGNLFSAFQQADSATTRRS 750

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            G GLGL+I +    L  G+  ++S+    +    
Sbjct: 751 GGTGLGLAITKKLAELMKGNAGVTSTPGAGSVFWF 785



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 81/246 (32%), Gaps = 26/246 (10%)

Query: 89  KDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSK------ATEKLRKEGQSFD 142
            +E     G++   I       D  + E  +     +  ++         KL   G  F 
Sbjct: 305 PEEVGRRTGEIGFDILSGARRLDASAAEAGMPAQPMVDWAQLERWGGDPAKLPA-GTVFL 363

Query: 143 LVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYS-ELAETTLKCKKLSNHISVFKVLFDS 201
               T  D        ++GS A L + +L    + + A       KL +     +   D+
Sbjct: 364 NRPRTLWDEYRNAA--IAGSAAILVLTALVAALAVQNARRKRAEHKLRDTTIRLEATLDA 421

Query: 202 LDFLVWHRDQAGDI-LWANIS----YKKNTETEGIVFQKAIGES-RKLFKEEIKKRMISS 255
           L  L++  D+ G I  + + +    Y   +   G  F++ + E   ++  E ++    S 
Sbjct: 422 LPDLMFRIDRDGRIEEFRSSATDQLYASPSAFMGKTFREVVPEPAARVLDEALEDAARSG 481

Query: 256 SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA------IDVSKEITVNDQLTHTY 309
           S+    +   +        + +++     +  +   A       D+++       L    
Sbjct: 482 SSRGATYAIDI----GAEQRWFEVSMSAMAGADDRPAHFILLLRDITERKRAEQTLDDYR 537

Query: 310 EILHNL 315
           + L  +
Sbjct: 538 QGLEAM 543



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 50/158 (31%), Gaps = 21/158 (13%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLATNP 350
           A     E  + D        L  L   +   D++  ++    S  + L+    AF+    
Sbjct: 399 ARRKRAEHKLRDTTIRLEATLDALPDLMFRIDRDGRIEEFRSSATDQLYASPSAFMGK-- 456

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSN 407
           +  E+         +PE    +   E +    +S  +   T+ +  G   +   V +++ 
Sbjct: 457 TFREV---------VPEPAA-RVLDEALEDAARSGSSRGATYAIDIGAEQRWFEVSMSAM 506

Query: 408 PR-----GGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
                     I +  ++T +   E   +   +     +
Sbjct: 507 AGADDRPAHFILLLRDITERKRAEQTLDDYRQGLEAMV 544


>gi|330880822|gb|EGH14971.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 636

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 118/252 (46%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++    ++Q
Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TAEQ 301

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 302 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRE 361

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFS 722
           + +++         +   D  R+ QI   ++ NA+ F+ +G   ++   A  DN    F+
Sbjct: 362 LLLELHIQPGLDTVTVTGDPTRIRQILVNLIGNALKFTEQGKVSVVAQWAMLDNDQLHFT 421

Query: 723 --VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V ++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S +
Sbjct: 422 CAVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESQE 481

Query: 779 EGVTTINCRIPS 790
              +    +IP 
Sbjct: 482 GSGSVFTLQIPL 493


>gi|303248258|ref|ZP_07334521.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490396|gb|EFL50307.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 666

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 100/508 (19%), Positives = 202/508 (39%), Gaps = 49/508 (9%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQ 368
             IL    V+I   D    + F N      W +   F       +  L   R   +LP  
Sbjct: 26  ERILQFAPVSIMTVDAAGGILFVND-----WHL-ANFAMGKRGREFFLG--RKLQELPGI 77

Query: 369 LNWKTWKENIFSVYKSSETHKDTWH---LPNGQTLHVIVTSNPR------GGTIWMFENL 419
           ++     E+I +V      H +  +      GQ+ +  +   P        G I++ E++
Sbjct: 78  VS-AGIVEDIRAVLAGKPIHLEGVYTDECSGGQSAYQNIRGIPIFDAGAVTGAIFIREDV 136

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T  V  +        +    ++   + + +   DG I + N           + L   + 
Sbjct: 137 TKLVMAQHLLTENQAIFKALLNATHDSIILSDLDGYILVLNEEAARRRGHPADALVGTSL 196

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            + +A + +    +          + S+++ ++          D     S+ P+ +    
Sbjct: 197 YKFMAGSLAEERRQHLKEAAEKGTLVSYEERQE----------DRYYLVSLCPIADDHGR 246

Query: 540 LTFVNVTDSV-----RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + F+             E  L  + E    A + K+ F+ ++++ELR+PL  I+G T L 
Sbjct: 247 VIFMASYSRDITTLKETEAQLRRERELAFSASQAKSQFLGNITHELRTPLNGIMGATQL- 305

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              + G    +Q++  + ++ S   LL +VN++L+LA +DA  ++   S+  + +L+  +
Sbjct: 306 -AQQGGGEEEEQAELWDIVADSGQRLLAIVNNVLELADIDAAAIEPVLSSCDVRELMKNL 364

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA- 712
            +S + +    +I      D ++    V D  RL QI S +  NA+  + KG  + ++A 
Sbjct: 365 ARSYSVRAKVKDIDFVARIDPRIPRRLVGDVFRLRQILSNLADNALKCTQKG-CIDIRAK 423

Query: 713 ---------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
                    + +  + +F V++ G  I +++   +F  F    H    +  G GLGLSI 
Sbjct: 424 LITTSRLPFSPNYRNLLFMVRDTGIGIAKNLQDRIFEDFELAEHYLTKRVSGAGLGLSIA 483

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIP 789
              + + GG + + S+    +T    IP
Sbjct: 484 RHLVEMLGGRIWVKSAPGRGSTFYFTIP 511



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 79/260 (30%), Gaps = 28/260 (10%)

Query: 198 LFDSLDFLVWHRDQAGDILWAN----ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
           +       +   D AG IL+ N     ++            + + E   +    I + + 
Sbjct: 28  ILQFAPVSIMTVDAAGGILFVNDWHLANFAMGKRGREFFLGRKLQELPGIVSAGIVEDIR 87

Query: 254 SSSALEKNFCETVSTLE--HGNN-----KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLT 306
           +  A +    E V T E   G +     +   I       G   I  DV+K +     LT
Sbjct: 88  AVLAGKPIHLEGVYTDECSGGQSAYQNIRGIPIFDAGAVTGAIFIREDVTKLVMAQHLLT 147

Query: 307 HTYEILHNLTVA----IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
               I   L  A    I + D + Y+   N             L        +   L   
Sbjct: 148 ENQAIFKALLNATHDSIILSDLDGYILVLNEEAARRRGHPADALVGTSLYKFMAGSLAEE 207

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF---ENL 419
            +  + L     K  + S     E  +D ++L     + +   ++  G  I+M     ++
Sbjct: 208 RR--QHLKEAAEKGTLVS---YEERQEDRYYL-----VSLCPIADDHGRVIFMASYSRDI 257

Query: 420 TVQVDLETKYNTLVKVQGET 439
           T   + E +     ++    
Sbjct: 258 TTLKETEAQLRRERELAFSA 277


>gi|194477156|ref|YP_002049335.1| multi-sensor signal transduction histidine kinase [Paulinella
           chromatophora]
 gi|171192163|gb|ACB43125.1| multi-sensor signal transduction histidine kinase [Paulinella
           chromatophora]
          Length = 696

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 188/488 (38%), Gaps = 56/488 (11%)

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS--------ETHKDT 391
           E+ L  L TNP ND +L  ++   ++   +    W   IF V  ++        E  +  
Sbjct: 188 ELGLLVLGTNP-NDTVLASVKLTREITVVIFTAIWALVIFGVIFNTLTLTHPVKELLRGV 246

Query: 392 WHLPNG--QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN-----TLVKVQGETIDHLS 444
             + NG  Q   V+  S   G  +  F ++  Q+++  + N          Q   I  ++
Sbjct: 247 RAVANGDFQARIVLSVSGELGELVNGFNDMASQLEVYERANIEEVTAAQVKQQSLIATMA 306

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
           +G  +    GRI L+NP  R L+  E   L     ++ +    +   +      L A + 
Sbjct: 307 DGAVLLDAFGRIVLANPTARRLFHWEGRNLEGQDLVKELPTALALELSAP----LIALVN 362

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            S D      +    + +  ++  S+            + + D  R             +
Sbjct: 363 GSKDITDVRCKSGKPVRTLRIVLQSVKDASGTTVKGIAMTIQDLTR-----------EVE 411

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            +  +N F+ +VS+ELR+PL NI  + + L   K      ++++++   +  +  L  LV
Sbjct: 412 LNAAQNRFISNVSHELRTPLFNIKSYVETLYDLKDQLSEKEKNEFLSIANEETDRLTRLV 471

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N+ILDL+ +++G + +++  + L   +++  ++      + ++ + + +       + + 
Sbjct: 472 NNILDLSKLESGRV-VSFEIMELKPAMDQTLRNYRLNAKDKSVELVLDAYSNELKILGNW 530

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAA-----------------------RDNGDFIF 721
             LLQ  + ++ NA+ F+  G  +ILK                         + +     
Sbjct: 531 DLLLQAINNLVGNALKFTENGGRLILKTYPWPEVNSIFKLIPTSNRNSHKLNQISRMMRV 590

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEG 780
            + + G  I       +F RF    +      G GLGLSIV   +  H   + + S    
Sbjct: 591 EIADTGCGISLQDQSHIFERFYRVENTVHTETGTGLGLSIVRGIVEKHSSCIKVVSKPGV 650

Query: 781 VTTINCRI 788
            TT    +
Sbjct: 651 GTTFWFDL 658



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 23/188 (12%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVND---QLTHTYEI 311
            +    +F   +     G      +  ++N F +    ++V +   + +          +
Sbjct: 247 RAVANGDFQARIVLSVSGE-----LGELVNGFNDMASQLEVYERANIEEVTAAQVKQQSL 301

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           +  +     + D    +   N +   L+  +   L       EL   L      P     
Sbjct: 302 IATMADGAVLLDAFGRIVLANPTARRLFHWEGRNLEGQDLVKELPTALALELSAPLIALV 361

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDL 425
              K+      KS +           +TL +++ S          G     ++LT +V+L
Sbjct: 362 NGSKDITDVRCKSGKPV---------RTLRIVLQSVKDASGTTVKGIAMTIQDLTREVEL 412

Query: 426 ETKYNTLV 433
               N  +
Sbjct: 413 NAAQNRFI 420


>gi|169349479|ref|ZP_02866417.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552]
 gi|169293554|gb|EDS75687.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552]
          Length = 562

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 155/372 (41%), Gaps = 37/372 (9%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            D   K N         +D + EG  +   D ++ + N     L+    N +     I++
Sbjct: 226 KDTMNKLNDQQIKIKGILDQMKEGFILLDEDLKVLMINRKASKLYN---NTIELNRSIKD 282

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                               II + D+     Q  L           +  +    T+   
Sbjct: 283 FV--------------FDFKIIKALDNLTDEQQVVLFEKDKQYYNCYVAKVDYGVTL--- 325

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                       L         A +++  F  +VS+EL++P+T+I G+++LL+T  +   
Sbjct: 326 ------------LFVNITDHHNAMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVINDE 373

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +   + ++ I      + NL+NDIL ++ ++   + +    + +  L+NE+  ++  ++
Sbjct: 374 QA-AKKALDKIHTEVDNMSNLINDILMISRLENKDVDVIKHPVHIEPLVNEIIDTMQVEI 432

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            + N  + V  D     ++++ Q + Q+ S +++NA+ ++ K  ++ +KA     + +  
Sbjct: 433 DKRN--LTVYKDINDIIYLSNHQHMHQLLSNLITNAIKYNKKDGSITIKAYEVEHNIVIE 490

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I +     VF RF         +  G GLGL+IV+  ++ + G++ ++S  + 
Sbjct: 491 VSDTGRGISKIDQGRVFERFFRCDEGRDKETGGTGLGLAIVKHIVHYYQGNIVLTSKLDE 550

Query: 781 VTTINCRIPSKE 792
            TT    +P +E
Sbjct: 551 GTTFKIILPKEE 562


>gi|295428067|ref|ZP_06820699.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128425|gb|EFG58059.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 583

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNTRFFVVTTSYIDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + LN     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 428 LSLNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTY-DMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 583


>gi|315497659|ref|YP_004086463.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
 gi|315415671|gb|ADU12312.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
          Length = 598

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 144/341 (42%), Gaps = 12/341 (3%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
              + V   +GR+     A+       +  L     +   A    R         L  A+
Sbjct: 205 PHLIIVVDGEGRLL---SAYGETPPGLDMALLMKHGLITCAHVPHRL-------GLMQAL 254

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
             + D  R           D  +  ++    + +      + +     E  L    +  +
Sbjct: 255 EAAQDTGRAEAGFMPHAALDHFIRLNLRRGADGKLYGVLSDASLQHAREDELETARQEAQ 314

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
             +E K+ F+  +S+ELR+PL  +IGF+D+++    G L  K ++Y + I  S   +L+L
Sbjct: 315 ALNEGKSRFLAGMSHELRTPLNAVIGFSDIMRQQMFGPLTGKYAEYSQLIWESGQHVLDL 374

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VND+LD++ ++A   +L+       + ++   + I    HE  + +K +         AD
Sbjct: 375 VNDVLDMSKIEASRYELSLERFDAREPVSAALRLILATAHEKGVTVKSVLPPTPLEVTAD 434

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRF 742
           ++ + Q+   +LSNA+ F+ +G T+ L  +      I   + + G  I  +  K +   +
Sbjct: 435 KRAIKQMCLNLLSNAVKFTPQGGTITLMLSETGQHSIDIQITDTGVGIAPEDLKRLGKPY 494

Query: 743 VSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
             +    QR  G GLGLS+V++   LH G ++I S     T
Sbjct: 495 EQSGPMEQRAMGTGLGLSLVQALAGLHRGRMTIESELGVGT 535


>gi|288924824|ref|ZP_06418761.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
 gi|288338611|gb|EFC76960.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
          Length = 884

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 4/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +  +     +A   K  F  ++S+ELR+PLT I    + +      +L  +Q   +  
Sbjct: 359 RTIIMRRRLEEEATNAKLQFFTNISHELRTPLTLIADPVEHIIDD--DNLTRQQRNMLLI 416

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +  +L  LV++ILD   +  G M L  S   L   + +     AT   +  I +++ 
Sbjct: 417 VRRNVNVLTRLVSEILDFRKIQNGKMTLTLSDFDLAVYMRQWLDVFATTAGKKKISLELH 476

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L S  AD  ++ +I   +LSNAM ++ +G  +   A  +       V + G  +  
Sbjct: 477 AASPL-SIRADIYKVERICYNLLSNAMKYTPEGGRITFSAVTEGDFVHIGVTDTGIGMTR 535

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           D    VF RF    H  +  G G+GL+IV+SF  LH G V++ S     +T    +P K
Sbjct: 536 DEAAHVFERFYQVRHPHK-GGTGIGLAIVKSFAELHKGTVAVESEPGRGSTFTVTLPLK 593


>gi|266619278|ref|ZP_06112213.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288869195|gb|EFD01494.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 875

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 154/376 (40%), Gaps = 21/376 (5%)

Query: 428 KYNTLVKVQGETIDHLS----EGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +    +  + +  D+LS    +   +     G I         +     + +   +  + 
Sbjct: 219 RQRKELTYRSKLFDNLSLSIDDAFIIRDAGTGAINYRGLNVERILGIPVDYVE--SLYQG 276

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +    ++   E      FA+      +  K  +    +L   +  Y +  L   Q +  F
Sbjct: 277 MPEEDAQALREGVSDPQFASPFERMVEYTKPNREKCWML---IRIYRVEDLKTPQLITVF 333

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            + T+ VR+ + L E      +A+  K+ F+  +S+E+R+PL  IIG T +   + +   
Sbjct: 334 SDRTEEVRSRQILQEAMTNAEQANMAKSEFLSRMSHEIRTPLNAIIGMTTI--AAAVVRD 391

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            ++    +  I+ SS  LL L+ND+LD++ +++  M L      + +++N    ++  + 
Sbjct: 392 PARVEDCLSKITFSSRHLLMLINDVLDMSKIESRSMILQQEPFDMFEIINGFVSTVYAQT 451

Query: 663 HENNIRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----D 715
               I  +   +  G+   F+ D  RL QI   + SNA+ F+  G  + L+ +R      
Sbjct: 452 KAKGIEFQETMEGFGEDAIFIGDSLRLNQILFNLSSNAVKFTPPGGKIRLEVSRYRGRNT 511

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVS 773
                F++ + G  + ++  + VF  F            G GLG+SI  + I L GG + 
Sbjct: 512 ADMIRFTLSDTGIGMTKEAVERVFQPFEQADASIAKLYGGTGLGMSITRNLITLMGGCIR 571

Query: 774 ISSSDEGVTTINCRIP 789
           + S     T     +P
Sbjct: 572 VDSEPGVGTACIVELP 587


>gi|166030476|ref|ZP_02233305.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC
           27755]
 gi|166029728|gb|EDR48485.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC
           27755]
          Length = 470

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 4/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   +  LR  ++ +  FV +VS++ RSPLT+I G+ + +    +      Q +Y+  I 
Sbjct: 232 LNFMSSQLRDMEDYQKKFVANVSHDFRSPLTSIKGYVEAIADGTIPP--EMQGKYLNIIL 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L +L  D+L L   D   + L+     L++++  V  S   +  +  I I+++  
Sbjct: 290 FETERLTDLTKDLLTLNEFDTKNLLLDKVPFDLHEMIKNVAASFEGRCTQKKISIELVFA 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K    VAD++++ Q+   +L NA+ FS + S + ++          SVK+ G  IP + 
Sbjct: 350 RKHLKVVADKRKIQQVLYNLLDNAIKFSDQDSIITIETTERGDKIYTSVKDYGIGIPRNA 409

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              ++ RF  +       ++G GLGL+IV+  I  HG ++++ S++   T     +P  E
Sbjct: 410 LNKIWERFYKSDLSRGKDKKGTGLGLAIVKEAIQAHGENINVVSTEGVGTEFIFSLPKAE 469


>gi|32476376|ref|NP_869370.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32446921|emb|CAD78827.1| sensory transduction histidine kinase-possibly sensor/response
           regulator hybrid [Rhodopirellula baltica SH 1]
          Length = 860

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 21/240 (8%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IKN F+ ++S+E+R+P+  I+G  +L+  S   SL+ +Q  Y+  I  S+  LL ++NDI
Sbjct: 320 IKNQFLANMSHEIRTPMHGILGTAELMTRS---SLDEQQRHYMYMIQTSAKGLLTVLNDI 376

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQR 686
           LD + VD+G M L      L DLL++   ++   +    + ++     G     V D  R
Sbjct: 377 LDFSKVDSGQMTLESVPFELKDLLSQTMHAV-VNLKNEEVDLQFQPPVGVPEIIVGDPTR 435

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARD-------------NGDFIFSVKNNGSSIPED 733
           L Q+   ++ NA+ F+ +G  V +    +                  F++ + G  + + 
Sbjct: 436 LRQVLINLVGNALKFTEQG-RVTVTVENETRDATTLDTSDSKGSRIAFTITDTGIGMTQQ 494

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F        RR  G GLGLSI    + L GG + +SS     ++    IP +
Sbjct: 495 QQAKIFEAFTQGDSSTTRRFGGTGLGLSISSQLVELMGGRLQVSSVPNEGSSFRFDIPLR 554


>gi|84393022|ref|ZP_00991789.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01]
 gi|84376376|gb|EAP93257.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01]
          Length = 572

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +++     FV  +++ELR+PL  ++G  +L+  ++   L+S Q + V  +S S  
Sbjct: 195 RKRAEESERATRDFVAMINHELRTPLNGLLGSAELISDTE---LSSSQREIVNNLSQSGE 251

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  ++ND+LD + ++AG++ L      L+DL N ++     +  E  I   +     + 
Sbjct: 252 FLRTIINDLLDFSKINAGMLDLIPKKFALHDLRNTIESIFVNRAIEKQIEFNISVASNVP 311

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             F  D +R+ Q+F  ++ NA+ F+ +G  V +    D   F+FSV++ G  I E   K+
Sbjct: 312 SHFQGDLERITQLFVNLIGNAIKFTEEGH-VNVDIEWDKNQFVFSVEDTGVGIAESAHKT 370

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F    +   R   G GLGL+I    + L  G + ++S     TT    IP +
Sbjct: 371 LFEPFTQADNSSSRNYEGTGLGLAICRKLVALMNGVIGVTSVVGSGTTFTISIPLQ 426


>gi|290473792|ref|YP_003466666.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus bovienii
           SS-2004]
 gi|289173099|emb|CBJ79872.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus bovienii
           SS-2004]
          Length = 921

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 87/384 (22%), Positives = 171/384 (44%), Gaps = 33/384 (8%)

Query: 413 IWMFEN--LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKT 469
           +W+FE    +   +   +     +   + +     G+++    DG   LSN     L   
Sbjct: 311 VWLFERKIFSPAEENAIRLEEHEQFNHKIVASAPVGISILRINDGANILSN----ELAHN 366

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
               L+     R +   C +  +  D       ++TS ++    LQ +         E +
Sbjct: 367 YTRMLTYEDQKRIVDIICDKTSSYID-------VVTSNNNH---LQISFVHSRYRNEEVA 416

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           I  L +  T          V+ E++L E   A  +A++ K+ F+  VS+ELR+PL  IIG
Sbjct: 417 ICVLVDIST---------RVKMEQSLQEMASAAEQANQAKSMFLATVSHELRTPLYGIIG 467

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +LL++    +L S+ ++ +  ++ +S++LL +++DILD + +++  +K++       +
Sbjct: 468 NLELLQSH---TLPSESARLLSAMNNASSLLLKIISDILDFSKIESKQLKIDSKKFSCKE 524

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV 708
           ++  V  +    + +  + +    +  +   +  D  RL QI S +L+NA+ F+  GS V
Sbjct: 525 IVLHVISNYLPLIVKKELGLYCYIEPDIPDIINNDPVRLQQIISNLLNNAIKFTETGSVV 584

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            +  +  +     S+K+ G  I + +   +F  F       Q   +G GLGL+I E  IN
Sbjct: 585 -ITISIKHSYLYISIKDTGVGIEDKLQTQLFEPFFQINANKQTFSQGTGLGLAICEKLIN 643

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
           L  G +   S     +  + R+P 
Sbjct: 644 LMDGDIEFISQQYIGSIFSIRLPL 667


>gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
 gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
          Length = 1343

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 119/258 (46%), Gaps = 8/258 (3%)

Query: 538  TMLTFVNVTDSVRAERAL---TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+  F         E  L       E  ++ +E+K  F  ++S+ELR+PLT I+     +
Sbjct: 794  TVFIFRYFWMRKSMEAQLKMERMDKERQKEVNEMKLRFFINISHELRTPLTLILAPVQEM 853

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                      KQ +YV+    ++  LL+LVN ++D    + G+  L      +++++ + 
Sbjct: 854  LDKVSDRWLHKQLEYVQ---KNTNRLLHLVNQLMDYRRAELGVFNLKVRPNPIHNVIEKD 910

Query: 655  KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                        I   + S+ +    + D   +  I + +LSNA  ++ +G ++ +    
Sbjct: 911  FSFYERLAQRKQIAYNLHSNAEGREILCDPDYMELIVNNLLSNAFKYTGEGKSITVTLKE 970

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +N + +  VK+ G  IP D    +F RF    +  +  G G+GLS+V+  ++LH G + +
Sbjct: 971  ENHELLLQVKDTGDGIPFDKQGKIFERFYQIDN--EHLGSGIGLSLVQRLVDLHHGRIEL 1028

Query: 775  SSSDEGVTTINCRIPSKE 792
             S +   +T +  +P++E
Sbjct: 1029 ESEEGAGSTFSVYLPTEE 1046


>gi|121590829|ref|ZP_01678155.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 2740-80]
 gi|121547319|gb|EAX57437.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 2740-80]
          Length = 1146

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 721 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 471 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 526


>gi|119191658|ref|XP_001246435.1| conserved hypothetical protein [Coccidioides immitis RS]
          Length = 757

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 102/510 (20%), Positives = 202/510 (39%), Gaps = 44/510 (8%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            D   +  ++     +   I D +  +   + S +EL+++DL           + +   S
Sbjct: 118 KDSYRNLCKVFALTPIPTIILDSDLRIIDISNSHLELFKLDLHECLGR----RIFDMEPS 173

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGGTIWMFE 417
              +P+     +      S  ++ +   D     +     +  T     N     +    
Sbjct: 174 QIPVPDVAILDSVINTAIST-QNVQVMHDVEDYLSQSVFRMRATPIFETNRLLYVVLEAL 232

Query: 418 NLTV-QVDLETKYNT-LVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTE-ENR 473
           N+T   +  +   N    +     +D +S+  + +    G I   N     L     E  
Sbjct: 233 NITDPYLKSKIHENAYASETYRVLVDTVSDYAIFMLDTKGYITTWNAGAAILKGYTAEEV 292

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSII 531
           L     +      C++     +       ++ S  D +   +G       S      +I 
Sbjct: 293 LGKHFSMFYGEDDCAQGKPRKE-------LVLSLHDGKVEDEGWRYRKDGSRFWANVTIT 345

Query: 532 PLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           P+     +   +    ++T+   AE  L    E   +  ++K+ F+ ++S+E+R+P+  +
Sbjct: 346 PVHQFGHHVGFVKVVRDLTERKAAETRLIAAYE---ETSKLKSDFLANMSHEIRTPMNGV 402

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LL ++   +L+  Q +Y   I  S+++LL L+NDILD + + +G   L      +
Sbjct: 403 LGALSLLNST---ALSQNQREYATIIEESTSVLLRLINDILDYSKLSSGSFSLTTDVFSV 459

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
             ++N V QS   +  E  I +K I D    S V  D  R  QI   ++ NA+ F+ KG 
Sbjct: 460 ESIVNSVIQSCPPRNPE--IEVKSIIDPDFPSHVKGDPLRFRQILQNLVGNAVKFTDKG- 516

Query: 707 TVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLS 759
            + ++       RD+      V ++G  + ++   ++F  F  +A+   +R  G GLGLS
Sbjct: 517 YIHVRTCFKEDERDDYSVTVEVIDSGIGVADEAMNTLFAPFTRSANSATKRYQGTGLGLS 576

Query: 760 IVESFINLHGGHVSISSSDE-GVTTINCRI 788
           I +S   L GG V   ++ +   +    +I
Sbjct: 577 ICKSLAELMGGAVGYRTNPDCQGSIFWLKI 606


>gi|332704569|ref|ZP_08424657.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554718|gb|EGJ51762.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
          Length = 549

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 134/316 (42%), Gaps = 20/316 (6%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           + A  + Y  +             +   RK ++  L +L++  LE  +      +T    
Sbjct: 99  LEAGAADYLVKGQFSTQLLERSIRYSMARKRIESQLRILNEE-LEARV----QERTAKLR 153

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             +     AE+AL +       A + K+ F+  +S+E+R+P+  +IG  +L       S 
Sbjct: 154 DEIDARTLAEQALRQAKAEAEAASQAKSEFLAKMSHEIRTPINGVIGMAELALR---ASR 210

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +  +Y+  I  S T LL ++NDIL+L+ ++AG ++L      L   L +   ++A  +
Sbjct: 211 EPRILEYLGLIKTSGTQLLRIINDILNLSKIEAGKVELEARPFDLRGDLEDTLATLAPSV 270

Query: 663 HENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
              ++R+    DG +    V D  RL Q+ + ++ NA+ ++ KG  + L     +     
Sbjct: 271 QAKSLRLVHTVDGDIPAHLVGDSARLRQVITNLVGNAVKYTHKG-LITLSVRLADEAADQ 329

Query: 718 ----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
                 +F V+++G  IP+D    +F  F            G GLGL+I   ++ L  G 
Sbjct: 330 SGGMRLLFQVRDSGIGIPQDKLADIFESFTQVNSPEMINSAGTGLGLAISRHYVELMDGR 389

Query: 772 VSISSSDEGVTTINCR 787
           +   S     +     
Sbjct: 390 IWAESEPGTGSIFFFT 405


>gi|299147467|ref|ZP_07040532.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298514745|gb|EFI38629.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1341

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I  ++ 
Sbjct: 808  KQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIHKNAG 865

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D +  
Sbjct: 866  NLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQC 925

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+    +
Sbjct: 926  LVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVKI 985

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F RF    + GQ  G G+GL++ +  +  H G +++ S     +     +
Sbjct: 986  FERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTL 1035


>gi|298482475|ref|ZP_07000661.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298271454|gb|EFI13029.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1341

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I  ++ 
Sbjct: 808  KQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIHKNAG 865

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D +  
Sbjct: 866  NLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQC 925

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+    +
Sbjct: 926  LVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVKI 985

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F RF    + GQ  G G+GL++ +  +  H G +++ S     +     +
Sbjct: 986  FERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTL 1035


>gi|295088146|emb|CBK69669.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1341

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I  ++ 
Sbjct: 808  KQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIHKNAG 865

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D +  
Sbjct: 866  NLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQC 925

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+    +
Sbjct: 926  LVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVKI 985

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F RF    + GQ  G G+GL++ +  +  H G +++ S     +     +
Sbjct: 986  FERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTL 1035


>gi|293371658|ref|ZP_06618069.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
 gi|292633355|gb|EFF51925.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
          Length = 1341

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I  ++ 
Sbjct: 808  KQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIHKNAG 865

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D +  
Sbjct: 866  NLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQC 925

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+    +
Sbjct: 926  LVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVKI 985

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F RF    + GQ  G G+GL++ +  +  H G +++ S     +     +
Sbjct: 986  FERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTL 1035


>gi|237715249|ref|ZP_04545730.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405093|ref|ZP_06081643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646474|ref|ZP_06724113.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
 gi|294808662|ref|ZP_06767396.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
 gi|229444558|gb|EEO50349.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262355968|gb|EEZ05058.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638187|gb|EFF56566.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
 gi|294444101|gb|EFG12834.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
          Length = 1341

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I  ++ 
Sbjct: 808  KQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIHKNAG 865

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D +  
Sbjct: 866  NLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQC 925

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+    +
Sbjct: 926  LVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVKI 985

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F RF    + GQ  G G+GL++ +  +  H G +++ S     +     +
Sbjct: 986  FERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTL 1035


>gi|218134830|ref|ZP_03463634.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990215|gb|EEC56226.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
          Length = 473

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 14/279 (5%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           K++   ++  S   L+Y I   P            +  R   +L   +  + + D+ +  
Sbjct: 198 KAIIKGVDEYSKGNLDYRIDLAPG----------DELHRLGASLNYMSSEINEMDKFQQK 247

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S++ RSPLT+I G+ + +    +        +Y+  +   +  L  L N++L L 
Sbjct: 248 FISNISHDFRSPLTSIKGYLEAMSDGTIPP--ELHQKYIGIVLFETERLTKLTNNLLTLN 305

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +D   ++LNYS   +ND++    ++      E  I  K+    +     AD +++ Q+ 
Sbjct: 306 DLDPKSVRLNYSDFDINDVIRHTIETFEGVCTEKKITFKLTFSSRQLMVHADMEKIQQVV 365

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             ++ NA+ FS   S + +     NG    SVK+NG  IP+D  K ++ RF    +   R
Sbjct: 366 YNLVDNAVKFSHPDSFIAISTTTKNGRAFISVKDNGIGIPKDDLKKIWERFYKTDNSRGR 425

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +G GLGL+IV   I  HG  + + S++   T     +
Sbjct: 426 DKKGSGLGLAIVREIIQTHGERIDVISTEGVGTEFVFSL 464


>gi|160885605|ref|ZP_02066608.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483]
 gi|156109227|gb|EDO10972.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483]
          Length = 1341

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I  ++ 
Sbjct: 808  KQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIHKNAG 865

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D +  
Sbjct: 866  NLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQC 925

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                DR +L ++ + +LSNA  ++S G ++ ++ A    + +FSV +NG+ I E+    +
Sbjct: 926  LVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVKI 985

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F RF    + GQ  G G+GL++ +  +  H G +++ S     +     +
Sbjct: 986  FERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTL 1035


>gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1145

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 117/247 (47%), Gaps = 2/247 (0%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +  +  +   ++N +L++AD++K+  + + S+ELR+P+  I G  + +  S+   L 
Sbjct: 449 QTQELQQQVKLTHKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQ-DLT 507

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   +  I  S+  L  LV+D+LD   +  G ++++   +    ++  V       + 
Sbjct: 508 EGQQNQLGLIIKSADGLARLVDDLLDYHQMRYGQLEIHPQPVASKGVIRLVLDLCQHLVQ 567

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +  IS  +L   +AD QRL Q+   ++ NA+ ++ +G  V+L A  +       V
Sbjct: 568 AKPLTLVDISPAELPPVLADEQRLEQVIYNLVGNAIKYTPQG-KVVLSALVEGNFLRIRV 626

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I +D  + +F   V  +    ++G GLGLSI    ++L GG + + S     +T
Sbjct: 627 TDTGIGIAKDHLEHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGST 686

Query: 784 INCRIPS 790
               +P 
Sbjct: 687 FAFTLPL 693


>gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 1514

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 3/241 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  A  ++ EAL + D  K  F  +VS+E R+PLT ++   + L       L+  Q   +
Sbjct: 334 AYEAAKQRAEALAEIDRAKTVFFSNVSHEFRTPLTLMLAPLEDLLADGADPLSPTQRDRL 393

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E    +S  LL LVN +LD + ++AG  +  Y    +  L  E+  S  + M    + + 
Sbjct: 394 EIAQRNSLRLLKLVNTLLDFSRIEAGRTQACYQLTDIATLTKELASSFRSLMERAGLTLI 453

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V       S   D++   +I   +LSNA  ++  GS + +     +     SV + G  I
Sbjct: 454 VNCPPLGESVYVDQEMWEKIVLNLLSNAFKYTLTGS-ITVNVQGFDDHIELSVIDTGIGI 512

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     +F RF  V  A      G G+GLS+V+  + LHGG + ++SS    +     +
Sbjct: 513 PEADLPHLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHGGQIKVNSSLGQGSCFTVCL 572

Query: 789 P 789
           P
Sbjct: 573 P 573



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 420 TVQVDLETKYNTLV---KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           T+++  E     +    +     +  +S+G  +  P+  I   N A   L+  + + L  
Sbjct: 779 TLRLATEKAQQAVAATTEKLNRILATISDGFILLDPEWVITYHNTATTKLFPAKSHPLGL 838

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G  +  +  +       +D        +T    ++        L  +  LE         
Sbjct: 839 GKTLWEVWPSWV----NTDLEHRLRYAMTEQVSQQCEYHCASSLTEELWLEIYAYSFEEG 894

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
             +    +++D  R+E    +   AL++  E 
Sbjct: 895 LGIFL-HDISDRKRSEAERHKVEIALKQYSEQ 925



 Score = 37.6 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 13/150 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            +  V         IL  ++    + D    + +HN +  +L+      L    +  E+ 
Sbjct: 787 AQQAVAATTEKLNRILATISDGFILLDPEWVITYHNTATTKLFPAKSHPLGLGKTLWEVW 846

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH---LPNGQTLHVIVTSNPRGGTI 413
                    P  +N        +++ +      +      L     L +   S   G  I
Sbjct: 847 ---------PSWVNTDLEHRLRYAMTEQVSQQCEYHCASSLTEELWLEIYAYSFEEGLGI 897

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHL 443
           ++  +++ +   E + + +     +  + L
Sbjct: 898 FL-HDISDRKRSEAERHKVEIALKQYSEQL 926


>gi|169334063|ref|ZP_02861256.1| hypothetical protein ANASTE_00456 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258780|gb|EDS72746.1| hypothetical protein ANASTE_00456 [Anaerofustis stercorihominis DSM
           17244]
          Length = 915

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 114/235 (48%), Gaps = 8/235 (3%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E    + + K+ F+  +S+E+R+P+  IIG T++        L     + +  I +S+  
Sbjct: 536 EEAEASSKAKSEFLSLMSHEIRTPINAIIGLTNI--NMMNEDLPEPLKKNLSKIDSSAQF 593

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+LVNDILD++ +    M +N     L  ++N++ +   +K  E  I++    D +   
Sbjct: 594 LLSLVNDILDMSKIQNYKMVINSECFDLTKVINDIDELFISKKEEKCIKLTYDIDLQNKY 653

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVKNNGSSIPEDM 734
           F+ D  R+ QI S I+SNA  F+ +   +IL         ++ D  FS+K+NG  I ED 
Sbjct: 654 FMGDSVRIKQIISNIVSNAFKFTEEDGEIILTIREIVKDSNSSDVFFSIKDNGIGIKEDK 713

Query: 735 CKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +F  F   + +     G GLGL I    + L GG + + S++   +     +
Sbjct: 714 LSKIFEAFEQVSINYNNETGTGLGLFICNHLVKLMGGDLKVKSTEGEGSDFYFTL 768


>gi|194367478|ref|YP_002030088.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194350282|gb|ACF53405.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 738

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 12/231 (5%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K  F+  +S+E+R+PL  I+   +L+    LG     Q Q +   SASS  LL +V+DI
Sbjct: 75  AKGEFLATMSHEIRTPLNGILPMLELIARGPLG---EDQRQMLATASASSQQLLRIVDDI 131

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQR 686
           LD + ++A  ++L  ++  L +LL+ V Q +        + + +  D  +      D  R
Sbjct: 132 LDYSRLEAQALELEITSFNLRELLDGVVQLMQRAADSKGLVLGLQLDPSVRLPVRGDPVR 191

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNR 741
           L Q+ S +L+NA+ F+++G  V L+  R           F + + G  I + +   +F  
Sbjct: 192 LRQVLSNLLANAIKFTARG-QVQLRVQRLGEGAAQHQLRFEITDTGIGIDQALQARLFQS 250

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F        R   G GLGL+I +  I+L  G + + S+     T    IP 
Sbjct: 251 FSQADASTTRIYGGTGLGLAICKRIIDLMQGRIGVQSTPGQGATFWFEIPL 301


>gi|330959044|gb|EGH59304.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 652

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++     +Q
Sbjct: 254 EQQRSVAQLIQMREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TDEQ 310

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 311 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRK 370

Query: 667 IRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           + +K+     L   + V D  R+ QI   ++ NA+ F+ +G TV + A     D+    F
Sbjct: 371 LLLKLHIQPGLEALTVVGDPTRIRQILVNLIGNALKFTEQG-TVSVDAEWAMLDHDHLRF 429

Query: 722 --SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +V ++G  I  D  +S+F+ F         +  G GLGL I  +     GG +   S 
Sbjct: 430 TCTVHDSGIGIEADRLESMFDAFRQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQSE 489

Query: 778 DEGVTTINCRIPS 790
           +   +    +IP 
Sbjct: 490 EGSGSVFTLQIPL 502


>gi|260771196|ref|ZP_05880123.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
 gi|260613793|gb|EEX38985.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
          Length = 1113

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 13/290 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ E         +  L      +     + + ++N+ L
Sbjct: 386 INTDRRDEIGRLAVSFERMQRSIRE---------KMQLIKAQNKELESNIQVIRKQNDEL 436

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+++K+ F+   S+ELR+PL  +IG  + L +   G +N+     ++ I +S   L  
Sbjct: 437 QLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPINAAHKYQLDIIISSGQRLAT 496

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           LV+D+LD   +  G + ++ + + L++    V +     + +  IRI      +   +V 
Sbjct: 497 LVDDLLDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRIINQVAEEAPVWVS 556

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD QRL Q+   ++ NA+ ++S+G  +++ A R +      V + G  IP +  + +F  
Sbjct: 557 ADAQRLEQVLYNLIGNAIKYTSEG-KIVISATRVDQHIRVQVVDTGQGIPAEQLEHIFEP 615

Query: 742 FVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +         R+G GLGLSI    I L  G + +SS     TT +  +P
Sbjct: 616 LIQAGHDTSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLP 665


>gi|149370174|ref|ZP_01890025.1| Signal transduction histidine kinase-like protein [unidentified
           eubacterium SCB49]
 gi|149356665|gb|EDM45221.1| Signal transduction histidine kinase-like protein [unidentified
           eubacterium SCB49]
          Length = 728

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 135/322 (41%), Gaps = 16/322 (4%)

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           +   I+       N  D  +      T  + ++KS+   +      V    I+ L     
Sbjct: 260 YFDAISNGADEESNLGDLKETIEHQQTKLEKDQKSMSFIIYTTGLGVTLIVILSLLTLSL 319

Query: 539 MLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                         ++    L    E   KA   K  F+  VS+ELR+PL  + G T LL
Sbjct: 320 YKINNLKAKANNLLIQKNSELQAAKEKAEKASVAKAQFLSTVSHELRTPLYAVTGLTHLL 379

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 +   KQ ++++ +  S   LL+L+N++LDL  ++A   ++ Y T  L   + +V
Sbjct: 380 LDE---NPEPKQKEHLDSLKFSGEYLLSLINNLLDLNKLEAKKTEVEYLTFNLEKQIRDV 436

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             ++     + N ++ +  D +L    V D  +L QI   ++ N++ F+ +   V ++  
Sbjct: 437 IDALKNSAQDKNNKVTLDFDNELPDKIVGDPIKLSQILMNLIGNSLKFT-QNGFVTIRVK 495

Query: 714 RDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
           ++N D       F +++NG  I +    ++F  F   +     +  G GLGLSIV++ + 
Sbjct: 496 KNNEDDKNINIKFEIEDNGIGISKKKRSTIFESFSQGSLQVNRKYGGTGLGLSIVKNILK 555

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
           L    + + S+    +     I
Sbjct: 556 LMNSDIHLESTLGQGSKFWFNI 577


>gi|37519668|ref|NP_923045.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35210659|dbj|BAC88040.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 785

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 128/266 (48%), Gaps = 8/266 (3%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E   I +  AQ     +  T    AE+A     E   +A+ +K+ F+  +S+ELRSPLT 
Sbjct: 369 EDEAIAVQLAQLASVAIENTRLFEAEQAAKVDAE---EANRLKDEFLATLSHELRSPLTA 425

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+G+T LL+   LG++  + +  +E I  ++     L+ D+LD++ + AG +++  + + 
Sbjct: 426 ILGWTKLLRQVDLGAV--RAAHALEVIERNALAQNQLIEDLLDISRIVAGKLRIEAAAVD 483

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  ++     ++        I +    +  +   + D  RL Q+   +L+NA+ F+  G 
Sbjct: 484 LAGVIEAAIGTVRPAAQARAIEVDTEIEPGVPLLMGDATRLQQVVWNLLANAVKFTPNGG 543

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
            V ++ +R       +V ++G  I   +   VF RF        R   G+GLGL+IV   
Sbjct: 544 RVRVRLSRRGTAAEVAVSDSGLGIAPHLLPHVFERFRQADSSSTRSHGGLGLGLAIVRQL 603

Query: 765 INLHGGHVSISSS-DEGVTTINCRIP 789
           + LH G VS +S  +    T   R+P
Sbjct: 604 VELHSGTVSAASPGEGQGATFTVRLP 629


>gi|269926212|ref|YP_003322835.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789872|gb|ACZ42013.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 477

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 93/404 (23%), Positives = 170/404 (42%), Gaps = 30/404 (7%)

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           +GQ   ++ TS P G  I + ++   QV L       +KV  E ++  S  + +     R
Sbjct: 97  DGQV--IVTTSTPNGNNIPLDQDTLQQVSLGNSTFERIKVGDEELEVYSSPILLRD---R 151

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           +       RSL             I    A    +        + A+I+ +F    +SL 
Sbjct: 152 VIGVLQVARSL-----------QLIEQTLARLRLFAIVGFTLAMTASILATFYVANRSLF 200

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR-------AERALTEKNEALRKADEI 568
              EL+     E        +Q + T  N+ +  +           L   ++ LR+  + 
Sbjct: 201 PLKELI--RTAERVGRSGDLSQRVKTSPNLDEVGKLASTFNTMLERLELSDKQLRETLDA 258

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV   S+ELR+PLT I+G   LL      S   +Q + +E I   +  +  LV+D+L
Sbjct: 259 ERRFVADASHELRTPLTTILGNAGLLLKVPNMSPEDRQ-ESLEQIYEEADRMRRLVSDLL 317

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA  DAG  +L    + +  ++    + +  +  +  +RI  ISD +    V D+  L 
Sbjct: 318 TLARADAG-FRLKQEPVKVQPVVESAVREMEHRATDRQLRIDKISDVE---VVGDKDALK 373

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   +L NA+ ++    ++ ++  +D+   +  V + G  I ++    +F RF      
Sbjct: 374 QLVLILLDNAIKYTRNQDSIQVEVEKDDSQAVIRVADTGIGISQEHLPHIFERFYRADTS 433

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               G GLGLSI +  +  H G +S++S     +    ++P+K+
Sbjct: 434 RSSDGTGLGLSIAKWIVEQHCGSISVASEIGKGSIFEVKLPAKK 477


>gi|262172302|ref|ZP_06039980.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus MB-451]
 gi|261893378|gb|EEY39364.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus MB-451]
          Length = 1112

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 14/293 (4%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLE-YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
           A I T   DE   L  + E +  S+ E  S+I   N +     +           + ++N
Sbjct: 384 AMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNKELENNLLI----------IRKQN 433

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           + L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G L +     ++ I +S   
Sbjct: 434 DELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIIISSGQR 493

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  LV+D+LD   +  G + +    + L+     V +     + +  +RI      +   
Sbjct: 494 LATLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSNHLLGKKTLRIINQVSEQPVW 553

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F
Sbjct: 554 VSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQLEQIF 612

Query: 740 NRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 613 EPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMVGTTFSFTLPL 665


>gi|255589572|ref|XP_002535009.1| two-component sensor histidine kinase bacteria, putative [Ricinus
            communis]
 gi|223524203|gb|EEF27374.1| two-component sensor histidine kinase bacteria, putative [Ricinus
            communis]
          Length = 1204

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 113/699 (16%), Positives = 241/699 (34%), Gaps = 77/699 (11%)

Query: 128  SKATEKLRKEGQSFDLVAETQNDCAIKIEG-RVSGSCAFLR----------ILSLDGIY- 175
              A E L    +    V   + + A   +G   +G+    R          +  +D +  
Sbjct: 406  QHALEALHYACRPDGFVLLGRAEAAAGADGFEHAGAPHLYRKIPVARRQQALFPIDALRP 465

Query: 176  --SELAETTLKCKKLSNHI--SVFKVLFDSLDFLVWHRDQAGDIL-WANISYKKNTETEG 230
              SE      +  +  + +  +  +   +      +  D+ GD++ +     +      G
Sbjct: 466  WSSEGGAPPARRAQPVDPVIEAATRTALERYAPPGFVVDERGDVVQFRGDVSEFVAPASG 525

Query: 231  IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-SYKIVRVLNSFGEA 289
                             ++  +I +    +        +  G+ + + +++ V       
Sbjct: 526  EASLALPRLLNPELNVPVRTALIEARRTGQPV--RRERVPLGDRRYALEVLPVGAEDLVP 583

Query: 290  GIAI-------DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
               +       + S E T+N  L   +  L  L                      +  + 
Sbjct: 584  HFLVTLHPLPLETSAEPTMNPDLHSGHGRLQELE-------------------RTVTTLS 624

Query: 343  LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
                AT      ++    SAN+       +T  E + S  +  ++  +   L        
Sbjct: 625  DELEATQKQLKAVVAEFESANE-----ELRTANEEMLSTNEELQSANEELLLAK----QE 675

Query: 403  IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
            + ++N   G++    +         + +         ++ +   V +     R++  +P 
Sbjct: 676  LESANQELGSL---ND--ELRTRNQQLDRANDDLSNLVEGIPLPVVLLDKQLRLRHFSPQ 730

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF---DDERKSLQGTLE 519
             + L+    + +          A  S+ ++  D   +  + +      + E + ++G   
Sbjct: 731  AQQLFGFPPDSVGQPM------AQLSQMFSTGDLEHMVLSAVQGLAEVEHEYQDVEGHWW 784

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            L++  V  Y          +L   ++ +  RA             A+  K++F+  VS+E
Sbjct: 785  LVN--VRAYRTTDDRIDGAVLAVQDIDELKRAVDRAQTAQRDAETANNAKDNFLGIVSHE 842

Query: 580  LRSPLTNIIGFTDLLK---TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            LR+PL  I  +  +LK      L + +    + VE I         L++D+LD++ + +G
Sbjct: 843  LRAPLNVIASWAAVLKTASERGLQTDDKTARRAVETILRQCQSQAALIDDLLDVSRITSG 902

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
               L+   +     +  V +          I +             D +RL Q+ S ++ 
Sbjct: 903  RFALDAQPVDFAATVRTVVEGHRPAATTKEITLISSGLHDEAVVSGDARRLQQVVSNLIG 962

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGV 754
            NA+ F+     V +   R       SV + G  +  D+   +F+RF+ +      Q  G+
Sbjct: 963  NALKFTPNSGRVEVALTRLGALIELSVADTGIGVNPDLLPHLFDRFMQSDMSRTRQYGGL 1022

Query: 755  GLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPSKE 792
            GLGLSIV+  +  HGG V+ SS  EG  T +  R+P  +
Sbjct: 1023 GLGLSIVKHLVAAHGGTVAASSEGEGRGTRLTVRLPLVQ 1061


>gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
           Bem]
 gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 511

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 160/396 (40%), Gaps = 42/396 (10%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
               L  + +   +     +  +++ +      GRI   +     L   E   L  G  +
Sbjct: 125 ENARLSQQLDEERRKMEAVLQGMADLLVAVDLQGRIITWSRQAARLLAAEGESLL-GKTL 183

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNAQTM 539
             +         E  G +L A  +    + R  +   L++ S +V +  S  PL NA   
Sbjct: 184 EEVLKA------EVPGGELPARTVLRTGEPRLDVGYLLKIGSLTVPVLSSAAPLWNANGE 237

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           L              +      L++ ++ K  FV  +S++L+SP+T ++G  DL++ +KL
Sbjct: 238 LAGSV---------EIIRDISKLKELEQEKEDFVSMLSHDLKSPITAVVGSIDLVREAKL 288

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G +   QS+Y+     S   ++ +++ +L +   +AG MKLN+     + L+N       
Sbjct: 289 GPVTPDQSEYLNAAIESCEEMVEMIDTLLGIHKFEAGKMKLNFREEDPSLLINRSVTKFQ 348

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------ 713
           T      I +       L +  ADR    +I   +LSNA+ F+ +G  + + A       
Sbjct: 349 TPAQRGAISLFATLPPSLPAISADRSSFSRILGNLLSNAVKFTPEGGEIEVSADLVQDPA 408

Query: 714 -----------------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGV 754
                            R+       V+++G  IP++   S+F+RFV   +R Q   RG 
Sbjct: 409 PVLAHVPEECYPGQELPREGEFVRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGT 468

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+     ++ HGG++   S     +      P+
Sbjct: 469 GLGLAFCRKAVDAHGGYIWAESEPGAGSVFTLMFPA 504


>gi|114324566|gb|ABI63590.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 157/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRGSIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +      K+    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFYFT 969


>gi|75907244|ref|YP_321540.1| histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700969|gb|ABA20645.1| histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1109

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 16/292 (5%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF--VNVTDSVRAERALTEKNEALRKADE 567
           E ++ Q  +   +  +L+ + + LPN   +      +VT+  +  + L  KN  L + + 
Sbjct: 338 EVQNGQERVWQFAKILLDNTDLKLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNR 397

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+  +S+EL++PLT ++G + LL   +LG LN +Q++Y   I  S   L+++VNDI
Sbjct: 398 LKDEFLACISHELKTPLTAVLGLSRLLVDQQLGELNERQARYAGLIHQSGRHLMSVVNDI 457

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT------------KMHENNIRIKVISDG 675
           LDL  ++ G M+L    + +  + +                       ++     +  + 
Sbjct: 458 LDLTRMETGQMELTPVPVSIRAVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSIEL 517

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L   VAD  RL Q+   +LSNA  F+     + L+ +   G   F+V + G  IPE   
Sbjct: 518 DLDQIVADELRLRQMLVHLLSNAFKFTEISGEIGLRVSHWEGWIAFTVWDTGIGIPEHQQ 577

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +F +F    +    Q  G GLGL +  +   LHGG VS  S +   +   
Sbjct: 578 HLIFQKFQQLENPLTRQFEGTGLGLVLTRALARLHGGDVSFLSREGKGSQFT 629


>gi|229043768|ref|ZP_04191468.1| hypothetical protein bcere0027_18130 [Bacillus cereus AH676]
 gi|228725569|gb|EEL76826.1| hypothetical protein bcere0027_18130 [Bacillus cereus AH676]
          Length = 443

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 205 ELGELAHSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 263

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  
Sbjct: 264 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKE 323

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+     D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ 
Sbjct: 324 IQFITTIDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDE 381

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  
Sbjct: 382 GIGIAKEHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILI 439

Query: 787 RIPS 790
           ++P 
Sbjct: 440 KLPL 443


>gi|294495286|ref|YP_003541779.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666285|gb|ADE36134.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 510

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 171/388 (44%), Gaps = 15/388 (3%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           +   +   + ++T Y+ L K + +    ID     + V   D ++ L+N     +    +
Sbjct: 111 ILTRINSLLQIKTLYDKLAKERDQAQTYIDVAQTLIGVVDRDLKVVLANKKSSEVLGYPQ 170

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSDSVLEYSI 530
             +              R   ++    +    I   +  E+  L  T E   + ++ +  
Sbjct: 171 EEIIGQKWFDVFLPERIRDMIKTGYNMVLEGEIEPPEFSEKPILTRTGE---ERLVFWHD 227

Query: 531 IPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           + L + Q     T+ +  ++T+  +AE AL E N+ L++ D+++N F+ ++S EL+ PL 
Sbjct: 228 VVLKDDQGGIMGTISSGEDITEKKQAEMALVEANKELQELDKMRNEFLANISKELQMPLA 287

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I GF++LL   + G +NSKQ   +  I+ +   L   VN +L  +   +  +   +   
Sbjct: 288 SIKGFSNLLARGEYGEINSKQRDALLTITRNCDRLQKHVNVLLYASEDCSQNVIYYFEAT 347

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            +N LLN+    +     + N+ +++  +  +    AD  +L  +  +IL NA+ F+   
Sbjct: 348 DINSLLNKTLDELKINFAKYNLTLEINLE-DIPQVNADETQLKNVIFQILDNAIKFTPAN 406

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVES 763
             + +  +R        ++++G  I +D  +++F  F     + R +  G G+GL I + 
Sbjct: 407 GKIKVSTSRTGKYVEMKIRDSGIGIAKDKVENIFKSFYQVDGSTRRKYGGTGIGLYICKK 466

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  H G + + S     +    ++P +
Sbjct: 467 IVEGHKGKILVESVKGKGSEFTVQLPIR 494



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 17/159 (10%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           K     DQ     ++   L + +   D++  +   N+   E+       +      D  L
Sbjct: 127 KLAKERDQAQTYIDVAQTL-IGVV--DRDLKVVLANKKSSEVLGYPQEEIIGQKWFDVFL 183

Query: 357 -EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            E +R   K    +  +   E      K   T      L      H +V  + +GG +  
Sbjct: 184 PERIRDMIKTGYNMVLEGEIEPPEFSEKPILTRTGEERL---VFWHDVVLKDDQGGIMGT 240

Query: 416 F---ENLTVQVDLE-------TKYNTLVKVQGETIDHLS 444
               E++T +   E        +   L K++ E + ++S
Sbjct: 241 ISSGEDITEKKQAEMALVEANKELQELDKMRNEFLANIS 279


>gi|253578663|ref|ZP_04855934.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849606|gb|EES77565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 943

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 12/252 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                 + E  E  + A++ K +F+ H+S+++R+P+  I+GFT +   +   + + +   
Sbjct: 547 QETAEEMAELAEHAQAANKAKTAFLSHMSHDMRTPMNAIMGFTGIAMKN---NPSDEVKN 603

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E I  SS  LL+L+ND+LDL  V++G +K N     L  + +         +   +I 
Sbjct: 604 CLEKIDESSEHLLSLINDVLDLTRVESGKVKYNPVPTDLKSITDFALDITKGFLTNRDIS 663

Query: 669 IKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIF 721
            K+   + K+ + + D  RL  +   ILSNA+ F+  G T+  +A           +  +
Sbjct: 664 FKIQREEAKIPNVLVDSVRLRDVLVNILSNAVKFTPDGETITFEARCQEKGGDGYINMHY 723

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + + G  + E+  K VF  F       R Q  G GLG++IV+ ++++ GG +S+ S   
Sbjct: 724 RISDTGIGMSEEFTKEVFEEFAQEDSDVRTQYHGAGLGMAIVKKYVDMMGGTISVQSKKH 783

Query: 780 GVTTINCRIPSK 791
             TT    IP +
Sbjct: 784 EGTTFTVDIPLE 795


>gi|83312486|ref|YP_422750.1| sensor protein fixL [Magnetospirillum magneticum AMB-1]
 gi|82947327|dbj|BAE52191.1| Sensor protein fixL [Magnetospirillum magneticum AMB-1]
          Length = 481

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 157/378 (41%), Gaps = 9/378 (2%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + E++  + ++E +  +  +      +    G+A    DG    +NPAF  +   +   L
Sbjct: 109 LLEDMAGRREVEAELRSNEEKLRAMFEKSPLGMARNRVDGSFLEANPAFLGIVGYDIEDL 168

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              ++            +E+   +   A+      E++ ++     +   +         
Sbjct: 169 RSLSYWD--LTPVRFGQDEATQLERLEALGHYGPYEKEYIRKDGRRVPVRLSGMLATGRD 226

Query: 535 NAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               + +   ++T+S   ERAL  K E L +++     F    S++LR PL  +  +  +
Sbjct: 227 GESYIWSIVEDITESQAVERALMAKTEELARSNADLEQFAFIASHDLREPLRMVSAYMGM 286

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+      +  + ++Y+ Y    +  +  LV D+L+ + V  G M+     + L ++++ 
Sbjct: 287 LERRFGPVVGDEGAEYIAYAKEGAQRMDQLVLDLLEYSRV--GRMEEPLEPVPLGEVVDG 344

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILK 711
           V  +++  + +    ++  S   L +  A R  + Q+   ++ NA+ +        V++ 
Sbjct: 345 VVANLSPAIAQYGASVECRSP--LPAIPAVRGEMAQLLQNLIGNAVKYREPSRPLRVVVS 402

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           A RD   +  SV +NG  I  +  + +F  F     R    G G+GL+I +  +  HGG 
Sbjct: 403 AVRDGEYWQISVADNGIGISPEFSERIFRIFQRLHTRDCFEGTGIGLAICKRIVERHGGR 462

Query: 772 VSISSSDEGVTTINCRIP 789
           + ++S     +T    +P
Sbjct: 463 IWVNSVPGEGSTFTFTLP 480


>gi|88704190|ref|ZP_01101904.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Congregibacter litoralis KT71]
 gi|88701241|gb|EAQ98346.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Congregibacter litoralis KT71]
          Length = 1476

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 111/231 (48%), Gaps = 16/231 (6%)

Query: 569  KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
            K+ F+  +S+E+R+P+  +IG TDLL  S    L+++Q  Y E    S   LL ++N IL
Sbjct: 851  KSEFLAAMSHEIRTPMHGMIGMTDLLIQS---GLSAQQRSYAETARDSGESLLAIINSIL 907

Query: 629  DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRL 687
            D + ++A  ++L++S   +  L++ V   +      +   + ++  D +      D  ++
Sbjct: 908  DYSKMEANKLELDFSEFDVISLIDNVCTLLIQSASSHGTEVYIVWGDCQHRKVYGDVGKI 967

Query: 688  LQIFSKILSNAMDFSSKGSTVILKA---------ARDNGDFIFSVKNNGSSIPEDMCKSV 738
             QI   ++ NA+ F+ KG  V+++          + +   +  +V++NG  I ++   SV
Sbjct: 968  RQILLNLIGNAIKFT-KGGKVVIRCSTTAVSEDSSENTVRYQVAVEDNGIGIAKEKLDSV 1026

Query: 739  FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            F  F        R   G GLGLSI +    L  G +S++S     +T    
Sbjct: 1027 FEVFTQADTSTTRQYGGTGLGLSISKELAALMDGSLSVTSELNVGSTFTFE 1077


>gi|325507737|gb|ADZ19373.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 654

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 164/358 (45%), Gaps = 21/358 (5%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              ++ L +GV +   D ++   N A R ++   +++   G  I  I   C         
Sbjct: 277 RGVLEKLKDGVIIKNED-KVVFMNEAQRKMFGLTKDKTVEGIDINKIVHRCC-------- 327

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                    + ++E+K +    + L   V  + I       T+    +V+D +  +++  
Sbjct: 328 -------CKAQNNEKKIITAGGKELYLEVEAFGITINGERLTLDIVKDVSDEILVKKS-K 379

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--QYVEYIS 614
           E+ E ++K D++K  F  ++++ELR+P+  I     +++     +   +++  +Y++ + 
Sbjct: 380 EEIEKVKKTDKLKGEFFTNITHELRTPINVIYSALQVMEMRIDKNNFDRRNLNKYMKVLK 439

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL ++++++D+  +D G +K   S   +  L+  +  SI   +HE  + +   + 
Sbjct: 440 QNCYRLLRIISNLIDITKIDTGFLKPCVSNREIIGLIENITMSIVPYLHEKGMELVFDTY 499

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D   + +I   +LSNA+ F  +   V++         +  VK+NG  IP++ 
Sbjct: 500 VEEKYVQCDPDMVERIMLNLLSNAVKFRKEKGLVLVTIHDKGSRIVLKVKDNGIGIPKEK 559

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            K +F RF      H    +G G+GLS+V+S + ++GG +S+ S +   TT     P+
Sbjct: 560 QKMIFKRFKQINPLHVTPHQGSGIGLSLVKSIVEMNGGKISVESEENVGTTFIIEFPA 617


>gi|302340463|ref|YP_003805669.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637648|gb|ADK83075.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 700

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 159/363 (43%), Gaps = 13/363 (3%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           G  +  + +GV +    G I+ +N     + +     L     IR    T S  ++    
Sbjct: 237 GYIMSKMLDGVLLVDAAGTIRDANNRILEMLRIRRRALIGQRLIRLFPTTDS--FDPMTE 294

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           +D    + ++   ER+ L G     +  VL    + L +A  +   V V   +R  R L 
Sbjct: 295 FD-IDKLDSTATLEREVLCGFSLEDAIPVLAAFSLLLDSAGEVGGAVVVVHDLRFRRELE 353

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                  KAD  K  F+ H+S+++++PL +IIG+  LL +     L+S+  +    I  S
Sbjct: 354 TAKLEAEKADRAKARFLAHMSHDIKTPLNSIIGYAQLLVSD--DELSSRNRRLSISICES 411

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
              LL L++DILD   ++AG M +        +LL E+          + +  +V     
Sbjct: 412 GNHLLELLSDILDATQMEAGRMVIERKGFSFRNLLREIAIGYRLTAKRHGLDFRVYLGPN 471

Query: 677 LGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKNNGSS 729
           L  F + D++R+LQI + ILSNA+ ++  G  V  +    + +          V + G  
Sbjct: 472 LPMFLLGDKKRILQILNNILSNAVKYTPVGGRVECEVGTSSDETSAARVLRIIVSDTGPG 531

Query: 730 IPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           I E++ KS+F  F   A   G+  G GLGL+I      + GG +    ++ G ++    I
Sbjct: 532 ISEELQKSIFEPFARGAEYAGRVEGQGLGLTISRELTRMMGGILEYRDAEIGGSSFIFTI 591

Query: 789 PSK 791
           P +
Sbjct: 592 PVE 594


>gi|87311982|ref|ZP_01094091.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87285286|gb|EAQ77211.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 539

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 8/246 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E    E       A+  K+ F+  +S+ELR+PLT I+G T+LL+          + Q +E
Sbjct: 144 EIEAEEARNRADAANRAKSHFLATMSHELRNPLTAILGMTELLQE---DPKPEDRQQMLE 200

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +   L  L+NDILDLA ++AG + +      + D+   +   +  +  +  + +++
Sbjct: 201 MIAENGRHLHELLNDILDLAKIEAGRITIELEEANVGDIAASLCNLLRYRAADEGLSLRL 260

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNGDFIFSVKNNGS 728
                +     D  R+ QI   ++ NA+ F+++G    T+ L+ + +    +  V + G 
Sbjct: 261 EIKTPVPHMNTDPIRIRQILLNLIGNAIKFNNQGEILVTIDLEKSDETKQVVIDVIDTGI 320

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D   ++F  FV  A   R ++ GVGLGL I      L GG +++ S     +    
Sbjct: 321 GIPPDRLTTIFEPFVQVAEDIRRRQPGVGLGLPISREIAILLGGELTVESEFGVGSRFRL 380

Query: 787 RIPSKE 792
            +P  E
Sbjct: 381 ILPVNE 386


>gi|332074557|gb|EGI85031.1| sensory box protein [Streptococcus pneumoniae GA17545]
          Length = 449

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 145/380 (38%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +      +  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +  +        + ++L   I  S +    S     E L+  V  +++I   
Sbjct: 135 --------LNRSILELLKIEENYELRDLITQSPELLLDSQDINGEYLNLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+            +  +  FV +V +ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTDQEKE-----------ERERRLFVSNVGHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALCETVAP--DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI-ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                  K  E   + +++ D  + S     D  ++ Q+   IL+NA+ +S  G  + ++
Sbjct: 293 LNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVR 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                   I S+ ++G  IP+     +F+RF        R   G GLGLSI +  I  H 
Sbjct: 353 MKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 950

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +       +K  E+K  F  ++S+ELR+PLT I G    L+  +   L+ K  QYV+ + 
Sbjct: 405 MKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELRERE--KLSPKGLQYVDLME 462

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  +L LVN ILD   +  G M+L+ S I  N+++   ++       EN I       
Sbjct: 463 KNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTFQLP 522

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPE 732
            +     AD++++  +   I+SNA  F+  G ++ +      D       V++NG  IP+
Sbjct: 523 DEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVGIPQ 582

Query: 733 DMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +    +F RF    +      +G G+GL++ +  +NLH G +   S +         +
Sbjct: 583 NKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVFIVEL 640


>gi|325681395|ref|ZP_08160921.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Ruminococcus albus 8]
 gi|324106885|gb|EGC01175.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Ruminococcus albus 8]
          Length = 508

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 4/235 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    E L   +++KN F+  VS+ELR+PLT I G+T+ + T        K  + +  I+
Sbjct: 241 INNMAEELSNTEQMKNEFISSVSHELRTPLTAIKGWTETVATMYGDVETFK--KGMRVIN 298

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + +  L  +V ++LD + +    + L   TI +   L E       +     I +     
Sbjct: 299 SETERLSQMVEELLDFSRIQDNRLLLQMDTIDILAELGETVLIYQERARVLGITLNYFEP 358

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D+ RL Q+F  ++ NA+ +S KG TV ++A  + GD   SV + G  I ++ 
Sbjct: 359 DMLPFVYGDKNRLRQVFINVVDNAIKYSDKGDTVSVEAYEEEGDICISVSDTGIGISKED 418

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  +F    H   RRG G+GL++ +  I  HGG ++I S     TT+   +P
Sbjct: 419 LPRIKQKFFKANH--TRRGSGIGLAVADEIIARHGGTLTIDSEQGVGTTVMITLP 471


>gi|254464412|ref|ZP_05077823.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206685320|gb|EDZ45802.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 827

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 157/380 (41%), Gaps = 14/380 (3%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            ++  + +         I    + + V G DGRI+  N A  S++            +  
Sbjct: 206 REMAIERSRAAARMEAMIASSLDAILVVGADGRIQAFNGAAESVFGYSREEAVGQPMVNL 265

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           I     +  +++          T    + R  L+   +      +E S+    +   M+ 
Sbjct: 266 IVPDHLQEAHKAGMKRFSRTGETRVAGKGRLQLEARRKSGELFPVELSVSVSQSGSEMVF 325

Query: 542 F---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                ++++ +  E  L    +     +  K++ +  +S+E+R+PLT ++G  DL++ + 
Sbjct: 326 VSFLRDISERIEVEEELRRARDDALAGERAKHNLLTVMSHEMRTPLTGVLGAIDLIEGT- 384

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +Q +Y+  +  S  +LL+ VND+L+L+ +++G          L++L++ + +S 
Sbjct: 385 --GLTQEQRRYLRAMRVSGELLLHHVNDVLELSRLESGADSEKLRIFDLDELVSGLVESQ 442

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQR-LLQIFSKILSNAMDFSSKGST-VILKAARDN 716
                   I + +         VA R R + Q+   ++ NA+ F+ +G+  V +    D 
Sbjct: 443 QASAKGQGIDLSLHCSLGGKPVVAGRPRAVQQVLLNLIGNALKFTREGAVSVDVMRLSDG 502

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
               FSV + G  I  +    +F  F++          G GLGL+I +  ++  GG ++ 
Sbjct: 503 ETVEFSVADTGQGIAPEDLDRIFEDFITLDASYGRGSEGTGLGLAITKRLVDAMGGTITC 562

Query: 775 SSSDEGVTTINCRI---PSK 791
            S     +     +   P+K
Sbjct: 563 ESEPGEGSLFTISLALPPAK 582


>gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio
           furnissii NCTC 11218]
          Length = 1113

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 13/290 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I T   DE   L  + E +  S+ E         +  L      +     + + ++N+ L
Sbjct: 386 INTDRRDEIGRLAVSFERMQRSIRE---------KMQLIKAQNKELESNIQVIRKQNDEL 436

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           + A+++K+ F+   S+ELR+PL  +IG  + L +   G +N+     ++ I +S   L  
Sbjct: 437 QLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPINAAHKYQLDIIISSGQRLAT 496

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           LV+D+LD   +  G + ++ + + L++    V +     + +  IRI      +   +V 
Sbjct: 497 LVDDLLDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRIINQVAEEAPVWVS 556

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD QRL Q+   ++ NA+ ++S+G  +++ A R +      V + G  IP +  + +F  
Sbjct: 557 ADAQRLEQVLYNLIGNAIKYTSEG-KIVISATRVDQHIRVQVVDTGQGIPAEQLEHIFEP 615

Query: 742 FVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +         R+G GLGLSI    I L  G + +SS     TT +  +P
Sbjct: 616 LIQAGHDTSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLP 665


>gi|296502595|ref|YP_003664295.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296323647|gb|ADH06575.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 452

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 5/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       +  Q +  
Sbjct: 220 HSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEIKQGMGI 278

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  I+    
Sbjct: 279 ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITT 338

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I +
Sbjct: 339 IDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAK 396

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  ++P 
Sbjct: 397 EHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLPL 452


>gi|190576120|ref|YP_001973965.1| putative sensor histidine kinase protein [Stenotrophomonas
           maltophilia K279a]
 gi|190014042|emb|CAQ47682.1| putative sensor histidine kinase protein [Stenotrophomonas
           maltophilia K279a]
          Length = 742

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 12/231 (5%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K  F+  +S+E+R+PL  I+   +L+    LG     Q Q +   SASS  LL +V+DI
Sbjct: 74  AKGEFLATMSHEIRTPLNGILPMLELIARGPLG---EDQRQMLATASASSQQLLRIVDDI 130

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQR 686
           LD + ++A  ++L  ++  L DLL+ V Q +        + + +  D  +      D  R
Sbjct: 131 LDYSRLEAQALELEITSFNLRDLLDGVVQLMQRAADAKGLSLGLQLDPSVRLPVRGDPVR 190

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNR 741
           L Q+ S +L+NA+ F+++G  V L+  R           F + + G  I + +   +F  
Sbjct: 191 LRQVLSNLLANAIKFTARG-QVQLRVQRLGEGPAQHQLRFEIIDTGIGIDDALQARLFQS 249

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F        R   G GLGL+I +  I+L  G + + S+     T    IP 
Sbjct: 250 FSQADASTTRIYGGTGLGLAICKRIIDLMHGRIGVLSTPGQGATFWFEIPL 300


>gi|229508236|ref|ZP_04397741.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae BX 330286]
 gi|229511525|ref|ZP_04401004.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|229518664|ref|ZP_04408107.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC9]
 gi|229607810|ref|YP_002878458.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MJ-1236]
 gi|254848772|ref|ZP_05238122.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MO10]
 gi|255744919|ref|ZP_05418869.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholera CIRS 101]
 gi|229343353|gb|EEO08328.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC9]
 gi|229351490|gb|EEO16431.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|229355741|gb|EEO20662.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae BX 330286]
 gi|229370465|gb|ACQ60888.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MJ-1236]
 gi|254844477|gb|EET22891.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MO10]
 gi|255737390|gb|EET92785.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholera CIRS 101]
          Length = 1176

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 522 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 575

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 576 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 633

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 634 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 690

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 691 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 750

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 751 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 809

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 810 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 869

Query: 788 IPS 790
           +P 
Sbjct: 870 LPL 872



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 501 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 556


>gi|254523833|ref|ZP_05135888.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp.
           SKA14]
 gi|219721424|gb|EED39949.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp.
           SKA14]
          Length = 991

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 147/381 (38%), Gaps = 15/381 (3%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGT 478
           T  +   ++      +    I     G+A+    +G   L N   R L +T  +      
Sbjct: 394 TPALADASRVYESEALSRVIIGTAPIGLALLSRSNGEPLLQNDTARQLVETV-HEAGEDA 452

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +  + A  +     +   ++   +  S  +   + Q  + +   +  E  +        
Sbjct: 453 TLPPLYARLAELGRNASIDEVLE-LQWSPAESGTATQLQISMAQATYYEQPVWVCALRDV 511

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                   +  RA        ++   A+  K++FV  +S+E+R+PL  ++G  +LL  S 
Sbjct: 512 TAQVELEDNLRRAREDSEAARQSAEAANRAKSAFVATMSHEIRTPLNGVLGHLELLARS- 570

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L   Q + ++ I  S+  L+ +++D+LD + ++AG + +      L  L+  V    
Sbjct: 571 --PLQPGQRERLDRIRFSADALMRIISDVLDFSKIEAGQLDVEPVPFALRPLIEGVALLF 628

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--- 714
           A       +R+    D       V D  R+ QI + ++ NA+ F+  G  ++L+A     
Sbjct: 629 APDALRKGVRLYFTVDAAADQRCVGDAHRIRQILTNLVGNAVKFTESG-RILLRAELHRA 687

Query: 715 --DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
                     V ++G  +  +    +F  F         +  G GLGL++        GG
Sbjct: 688 AGQGAQLRVQVIDSGIGMSPEQTAQLFQPFQQADASVSRRYGGSGLGLALCLQIAQAMGG 747

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            VS+ S++   ++    +P +
Sbjct: 748 QVSVESTEGVGSSFTLLLPMQ 768


>gi|220916365|ref|YP_002491669.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954219|gb|ACL64603.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 840

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 111/687 (16%), Positives = 228/687 (33%), Gaps = 51/687 (7%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG---SCAFLRILSLDGIYSELAET 181
             L  A +  R   +         +   +   GR+     +        L     +L   
Sbjct: 167 GALLAAVDPERLAARVLPAREGEGSVGIVDRAGRLVARVPAIPLAWDDRLVAGAQDLVRA 226

Query: 182 TLKCKK----LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK-- 235
            L   +    + +       L  ++           ++ WA  + +   +    + ++  
Sbjct: 227 ALAGAEATGPMRSEGGGPARLAAAVPVP--------ELAWAVRATQPRADMLAPMRRELA 278

Query: 236 --AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
              +G              + +                G  ++ + +   +     G A 
Sbjct: 279 IGVLGAGLVALVALGASWAVGAHTSRALRRLERHAAALGRGEAPEPLTGPDEVVRLGAAY 338

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEIDLAFLATNPSN 352
                  ++              V + I D      ++ N +++    +D  F       
Sbjct: 339 -AQMARHLDAVRRRFEAAFAEAPVGVLILDPAELRARWANPAYLAF--LDAPFRGEGVQG 395

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-----QTLHVIVTSN 407
             L EFL  A +             +  V      H++  +  +G           V + 
Sbjct: 396 LRLEEFLPRAQE-------AGLVALLREVAAGDVAHEEQEYRYDGFARGPTWWRWSVRAV 448

Query: 408 PRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
             GG     + M   +T QV    +     +     +  L  GV +    G++  +N A 
Sbjct: 449 ESGGGTRDLVLMVTEVTEQVRGREQVEADRRRLEAVLRVLPVGVLIADAGGQVVQANDAA 508

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LS 522
           R +W +         +    A         + G       + S +     L        +
Sbjct: 509 RRIWGSRAPLRPGALYREQRARRADSGAPLAAGDWALQRALRSGEAVGGELVEIDRFDGT 568

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +V+     P+ + +  +     T     E         LR+A   ++  +Q VS++LR+
Sbjct: 569 QAVVLNGAAPIRDGEGRVVGAVTTLLDVTE---------LRRAVRNRDEVLQVVSHDLRT 619

Query: 583 PLTNII-GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           PL+ +  G   L +        ++  +    ++A+   +  L++D+LDL T++ G + + 
Sbjct: 620 PLSAVTLGAAALTRLPDGPEAAAQARRAAARLAAAGRRMNRLIDDLLDLETLEEGRLSMR 679

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                  DLL E    +        + + + +   L     DR R+LQ+   + SNA+  
Sbjct: 680 PEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVACDRDRVLQVLGNVASNAVKA 739

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           + +G+  +   A+ +G  IF V++ G  IP+     VF+RF   +    R G GLGL+I 
Sbjct: 740 TEEGAVCLAAEAQADGAVIFRVRDTGPGIPDADLPHVFDRFQRGSAARWR-GSGLGLAIA 798

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
              +  HGG +   S+    TT++  +
Sbjct: 799 RGLVEAHGGRIWAESAPGAGTTVSFTL 825



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/425 (11%), Positives = 118/425 (27%), Gaps = 65/425 (15%)

Query: 69  LSKYHSLLTENNCLTIVWDGK-------------------------DETPEIIG------ 97
           + +   L+     + + WD +                            P  +       
Sbjct: 195 VDRAGRLVARVPAIPLAWDDRLVAGAQDLVRAALAGAEATGPMRSEGGGPARLAAAVPVP 254

Query: 98  QLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG 157
           +L   +   Q   D+L+     +      L      L   G S+ + A T    A++   
Sbjct: 255 ELAWAVRATQPRADMLAPMR--RELAIGVLGAGLVALVALGASWAVGAHTS--RALRRLE 310

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFK----VLFDSLDFLVWHRD-QA 212
           R + +              E+        +++ H+   +      F      V   D   
Sbjct: 311 RHAAALGRGEAPEPLTGPDEVVRLGAAYAQMARHLDAVRRRFEAAFAEAPVGVLILDPAE 370

Query: 213 GDILWANISYKKNTET-------EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET 265
               WAN +Y    +        +G+  ++ +  +++     + + + +     +     
Sbjct: 371 LRARWANPAYLAFLDAPFRGEGVQGLRLEEFLPRAQEAGLVALLREVAAGDVAHEEQEYR 430

Query: 266 VSTLEHGNNKSYKIVRVLNSFGE----AGIAIDVSKEITVNDQL----THTYEILHNLTV 317
                 G       VR + S G       +  +V++++   +Q+         +L  L V
Sbjct: 431 YDGFARGPTWWRWSVRAVESGGGTRDLVLMVTEVTEQVRGREQVEADRRRLEAVLRVLPV 490

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
            + I D    +   N +   +W    A L       E       +       +W    + 
Sbjct: 491 GVLIADAGGQVVQANDAARRIWG-SRAPLRPGALYREQRARRADSGAPLAAGDWAL--QR 547

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYN 430
                ++           +G    V+  + P         G +    ++T         +
Sbjct: 548 ALRSGEAVGGELVEIDRFDGTQAVVLNGAAPIRDGEGRVVGAVTTLLDVTELRRAVRNRD 607

Query: 431 TLVKV 435
            +++V
Sbjct: 608 EVLQV 612


>gi|114324568|gb|ABI63591.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 157/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +      K+    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFYFT 969


>gi|15641658|ref|NP_231290.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|153823157|ref|ZP_01975824.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|227081805|ref|YP_002810356.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae M66-2]
 gi|298498265|ref|ZP_07008072.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MAK 757]
 gi|9656167|gb|AAF94804.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|126519318|gb|EAZ76541.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|227009693|gb|ACP05905.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae M66-2]
 gi|297542598|gb|EFH78648.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MAK 757]
          Length = 1146

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 721 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 471 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 526


>gi|113477259|ref|YP_723320.1| histidine kinase [Trichodesmium erythraeum IMS101]
 gi|110168307|gb|ABG52847.1| histidine kinase [Trichodesmium erythraeum IMS101]
          Length = 1121

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 16/279 (5%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            + V  +S   L +  T++   +VT      + L +KN  L + + +K+ F+  +S+EL+
Sbjct: 323 QERVWHFSSQQLFDL-TLVLAQDVTKQHLVAKELQDKNTDLIRLNRLKDEFLACISHELK 381

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT ++G + LLK   LG+LN +Q+ Y   I  S   L+ ++NDILDL  ++ G M+L 
Sbjct: 382 TPLTAVLGLSSLLKDQTLGALNKRQTHYATLIHQSGRHLMAVINDILDLTRMETGQMELI 441

Query: 642 YSTIVLNDLLNEVKQSIATKMHEN-------------NIRIKVISDGKLGSFVADRQRLL 688
              + +  + +   Q      H+                +  +  +  L   +AD  RL 
Sbjct: 442 PEPVEIRKVCDRAFQEALQLQHKRPQGQSSAIFSDSIRAKYTLEIEKDLDIIIADELRLR 501

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+   +LSNA+ F+     + LK AR      F+V + G  IP +    +F +F    + 
Sbjct: 502 QMLVNLLSNALKFTPIDGKMGLKVARWEKWITFTVWDFGIGIPANKQHLIFQKFQQLENP 561

Query: 749 --GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              +  G GLGL + +    LHGG V+  S +   +   
Sbjct: 562 LIREFEGTGLGLVLTQRLARLHGGDVTFISQEGKGSEFT 600


>gi|297563589|ref|YP_003682563.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848037|gb|ADH70057.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 723

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 8/258 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
             + +   +  +  +   A  E  E L + ++ + + V  VS+ELR+PL+N+ G+ +  +
Sbjct: 452 GDSRVEVRDSGELGQLADAFNEMAEHLERLEKQRRAMVSDVSHELRTPLSNLRGWLEAAQ 511

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    +    V      + +L ++V+D+ DLA  DAG ++L+   +    L+ +V 
Sbjct: 512 DGVADLDRERMGMLVG----ETLLLQDIVDDLQDLALADAGKLRLSPEPVDAGALVEQVV 567

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            S   +     +R+  +++      VADR RL+Q+   +L NA+  +    TV ++A R 
Sbjct: 568 DSQRLRAAGAGLRL--VAEAGDVVVVADRTRLVQVVGNLLGNALRHTPAPGTVTVRARRS 625

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G+ +  V + G  IP +    VF+RF        RR  G GLGL+IV + + LHGG V+
Sbjct: 626 GGEAVVEVADTGVGIPAEDLPHVFDRFWRADKSRNRRTGGSGLGLAIVRNLVELHGGSVA 685

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S     TT   R+P +
Sbjct: 686 VESVVGEGTTFTVRLPLE 703


>gi|221199414|ref|ZP_03572458.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221205683|ref|ZP_03578698.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221174521|gb|EEE06953.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221180699|gb|EEE13102.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 991

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 157/384 (40%), Gaps = 34/384 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           T+     ++    I     G+A+     G + L N          E+ LS          
Sbjct: 368 TRLVDSERLNRTLIRTAPVGLALIAESTGAVLLRNEIMARHDGGAEHTLSR--------R 419

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTF 542
                    D        +    +   +L    +  +D+ L  +++ +        + T 
Sbjct: 420 IWQSLAGAPDANPTLRKRLIGSRE--ITLPAGGDRTTDTHLLVNLVRVKYGGESALLCTV 477

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T     E++L     A  +A+  K+ F+  +S+E+R+PL  +IG  +L+K    G L
Sbjct: 478 VDITARKLTEQSLDAARRAADQANRAKSVFLATMSHEIRTPLNAVIGNLELMKR---GPL 534

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + +     SST LL+++ND+LDL+ V+AG ++++        LL++V +S     
Sbjct: 535 ADAQRRRLHAADTSSTALLHILNDVLDLSKVEAGQLRIDAVPFDCAALLDDVTESFRPLA 594

Query: 663 HENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-------- 713
               + +      +     + D  R+ Q+ S +LSNA+ F+  G  V + A         
Sbjct: 595 ERKGLSVICDVALEPSPYRIGDPIRIRQVVSNLLSNAIKFTDAGH-VRVAAHAVSDAAHG 653

Query: 714 --RDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN 766
             R +G        V + G  IPE    ++F  +         +  G GLGL++    ++
Sbjct: 654 TGRTDGGAPVVEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLGLALCRRLLD 713

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
              G +++SS+    +T   RIP 
Sbjct: 714 AMNGDIAVSSAPGAGSTFRVRIPL 737


>gi|162453383|ref|YP_001615750.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
 gi|161163965|emb|CAN95270.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
          Length = 1676

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 138/327 (42%), Gaps = 22/327 (6%)

Query: 479  HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
             I  +  T        D      ++      +++ LQ T   L +         L   Q 
Sbjct: 909  SIGIVLNTIEANMRTEDLLKQSQSLARELQSQQEELQETNAALGEKA------RLLAEQN 962

Query: 539  MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +       +  +A +AL EK   L    + K+ F+ ++S+ELR+PL +++  +D L  + 
Sbjct: 963  VEVERKNHEVEQARQALEEKARQLALTSKYKSEFMANMSHELRTPLNSLLILSDQLSRNN 1022

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              +L ++Q +Y + I AS T LL L+NDILDL  +++G + ++   I   DL + V+++ 
Sbjct: 1023 DQNLTARQVEYAKTIHASGTDLLGLINDILDLTKIESGTVVVDVGEISFTDLSDYVRRTF 1082

Query: 659  ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                    +  ++     L +    D +RL Q+   +LSNA  F+ +G  V+       G
Sbjct: 1083 RHVAEAKKLDFELSFSSTLPTSMFTDAKRLQQVIKNLLSNAFKFTERGKVVLEVTVARGG 1142

Query: 718  D-------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
                             SV + G  I  D  + VF  F        R   G GLGL+I  
Sbjct: 1143 WSRENEVLSRADVVIALSVHDTGIGIAPDKQQIVFEAFQQADGSTSRKYGGTGLGLAISR 1202

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
                + GG +++ S+    +T    +P
Sbjct: 1203 EIAGMLGGDLTLISAPGRGSTFTLYLP 1229


>gi|229017311|ref|ZP_04174215.1| hypothetical protein bcere0030_18660 [Bacillus cereus AH1273]
 gi|228744012|gb|EEL94110.1| hypothetical protein bcere0030_18660 [Bacillus cereus AH1273]
          Length = 392

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 128/244 (52%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L    + + KA+++KN F+  +S+E+R+PLT I G+++ LK +     + + 
Sbjct: 154 ELGELAHSLNYMADKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTDEEI 212

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  
Sbjct: 213 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKQ 272

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++  +++ +    V DR RL Q+F  I+ NA+ +S++  T+ ++AA+  G  +  V + 
Sbjct: 273 IQL--VANLERVELVGDRNRLKQVFLNIIHNAIKYSNEKGTIYIEAAKSEGKAVIKVTDQ 330

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F          G G+GL+IV+  + LHGG +SI+S +   TTI  
Sbjct: 331 GIGIAKEHLPFIEQSFYQI--NSHIEGAGIGLAIVKKMVELHGGTLSITSRERVGTTILI 388

Query: 787 RIPS 790
           ++P 
Sbjct: 389 KLPL 392


>gi|114324564|gb|ABI63589.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|114324574|gb|ABI63594.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|114324576|gb|ABI63595.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 157/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +      K+    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFYFT 969


>gi|167644588|ref|YP_001682251.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347018|gb|ABZ69753.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 645

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 94/495 (18%), Positives = 188/495 (37%), Gaps = 35/495 (7%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI----DLAFLATNPSNDEL-LEFLRSA 362
           T +IL+     I I   +  ++  N     L+         +    P      L+    A
Sbjct: 14  TLDILNASQDCIWILGLDGAVEQMNHRAETLFPAQTVDRANWRRIWPEESRFSLDRALRA 73

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP----NGQTLHVIVTSNPRGGTIWMFEN 418
               +   ++ +        + S T+ DT   P    +G  + ++ T+           +
Sbjct: 74  ALTGQVAKFRAF----LGHARDSRTYCDTTIAPVRDRDGLVIRLLATA----------RD 119

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T +V+ ++   T++++    +   + G      DGR  L N A    +    +     T
Sbjct: 120 VTREVETQSFLRTVIQMLPSPLTVKNVG------DGRYVLVNRAAEDAFGLVADEALGRT 173

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
               +    +     ++   L    +   +D              + +  +   +     
Sbjct: 174 AAEVLDPDRAGRIAMAEALVLSTGEMQMSEDRVGEDADAATRHFLTKVLATYDDMGPRHL 233

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    +VT    A  +L    EA  +A   K++F+ ++S+E+R+PL  I+   D+L  S+
Sbjct: 234 ITLSTDVTAQRAAATSLRLALEAAEQASLAKSTFLANMSHEIRTPLNGIVAGADILARSE 293

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +  + V+ I  S   L  L++++LDL  ++AG + +      L DL   V    
Sbjct: 294 ---LTPRVRELVDIIQTSGKSLERLLSEVLDLVRIEAGQVTIETGVFHLGDLTRSVAALC 350

Query: 659 ATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A    E  + ++  I+     + + D  R+ Q+ + ++SNA+ F+ +G   +      +G
Sbjct: 351 ALHAGEKGVALETRIAPAADIAVIGDGARVRQVLTNLVSNAVKFTDQGQVAVEVDLGADG 410

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
               SV++ G          +F RF         +  G GLGL+I    + L GG +S  
Sbjct: 411 QTRISVRDTGVGFDPAEKARIFGRFQQADASFTRRFGGTGLGLTISRELVELMGGTLSCD 470

Query: 776 SSDEGVTTINCRIPS 790
           S     +T    +P 
Sbjct: 471 SRPGAGSTFWFDLPL 485


>gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii]
          Length = 1425

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K  F+  +S+ELR+PL  IIG +D L     G +N +  + +  I  S   LLNL+ND
Sbjct: 315 EQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLIND 374

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           ILD A++  G + + +  + L  ++++V         +  +++       +   + D  R
Sbjct: 375 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLA-KRGVKLVNDLRENVPFVLGDTGR 433

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+F  ++ N+  F+  G  + + AA  + +   +V + G  IPED    +F  F    
Sbjct: 434 IIQVFHNLIGNSCKFTHSG-NISISAAVKDDEVEVAVADTGIGIPEDKFDQIFLAFEQVD 492

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                +  G GLGL++V+  +  HGG +S+ S +   TT    +
Sbjct: 493 MSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRENQGTTFYFTL 536


>gi|330809931|ref|YP_004354393.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378039|gb|AEA69389.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1160

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 152/341 (44%), Gaps = 12/341 (3%)

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
           G I  S  A R   + +E           +          ++  +  + I+       ++
Sbjct: 381 GNIGTSIEAARYRQRLQEVLAETQQLNEELQVQQEELKTANEELEEQSRILKESQAHLEA 440

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            Q  LE  ++ + E         Q        ++   A+  L E+ E L+++ + K+ F+
Sbjct: 441 QQQELEQTNEQLAE---------QRDAMDQKNSELNLAQIQLQERAEELQRSSKYKSEFL 491

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PL + +  + LL  +   +L+ +Q ++ E I ++   LLNL+NDILD++ V
Sbjct: 492 ANMSHELRTPLNSSLILSKLLSENPQQNLSEEQVKFAESIYSAGNDLLNLINDILDISKV 551

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFS 692
           +AG +++      +  L+  ++        +  +  +V +          DRQRL Q+  
Sbjct: 552 EAGKLEVRPENTSVQRLVEGLRDMFEPLAADKGLGFEVQVLPDAPAMLYTDRQRLEQVIK 611

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +LSNA+ F+ +G+  +  A +      F V+++G  I  D  +S+F  F        RR
Sbjct: 612 NLLSNAVKFTEQGTVSLSVAGQPGSGIAFMVRDSGIGIAADQQQSIFEAFRQADGTTNRR 671

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             G GLGLSI      L GG + +SS     +     +P +
Sbjct: 672 YGGTGLGLSISRDLATLLGGSICVSSEPGQGSVFTLVMPER 712


>gi|298483350|ref|ZP_07001528.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
 gi|298270479|gb|EFI12062.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
          Length = 1353

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 6/252 (2%)

Query: 539  MLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  F  +  S+ AE  L     E   + +++K  F  ++S+ELR+PLT I+     +   
Sbjct: 805  VFRFFWMRKSMEAELELERRDKEHQEEINQMKMRFFINISHELRTPLTLILAPLQEIINK 864

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                    Q +Y++    ++  LL+LVN ++D    + G+ +L       + L+ +    
Sbjct: 865  ISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLF 921

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                     I   + S+ +    + D   L  I + +LSNA  ++  G ++ +    +N 
Sbjct: 922  YDKLARHKKITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENN 981

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +  V + G  IP +    +F RF       +  G G+GLS+V+  + LH G + + S 
Sbjct: 982  WLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQRLVELHHGRIELDSE 1039

Query: 778  DEGVTTINCRIP 789
            +   +T +  +P
Sbjct: 1040 EGKGSTFSVYLP 1051


>gi|293374016|ref|ZP_06620355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292630977|gb|EFF49616.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1353

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 6/252 (2%)

Query: 539  MLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  F  +  S+ AE  L     E   + +++K  F  ++S+ELR+PLT I+     +   
Sbjct: 805  VFRFFWMRKSMEAELELERRDKEHQEEINQMKMRFFINISHELRTPLTLILAPLQEIINK 864

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                    Q +Y++    ++  LL+LVN ++D    + G+ +L       + L+ +    
Sbjct: 865  ISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLF 921

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                     I   + S+ +    + D   L  I + +LSNA  ++  G ++ +    +N 
Sbjct: 922  YDKLARHKKITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENN 981

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +  V + G  IP +    +F RF       +  G G+GLS+V+  + LH G + + S 
Sbjct: 982  WLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQRLVELHHGRIELDSE 1039

Query: 778  DEGVTTINCRIP 789
            +   +T +  +P
Sbjct: 1040 EGKGSTFSVYLP 1051


>gi|284035080|ref|YP_003385010.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283814373|gb|ADB36211.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 778

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 146/324 (45%), Gaps = 34/324 (10%)

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV---- 543
           S + NE    DL + + T     ++S++  ++ +         + +PN + M  F     
Sbjct: 52  SSFMNEKAYADLTSQLKTEIGQRKQSIEKLIDAI-------RTLDMPNEEGMTDFNPDNL 104

Query: 544 ---------NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                     +      E  L +  E   +A   K+ F+  +S+E+R+PL  +IGFTDLL
Sbjct: 105 IELVEFLKRQIERRKMIENELRQAKELAEQATLAKSDFLSTMSHEIRTPLNGVIGFTDLL 164

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +K    +  Q  Y+  ++ S+T LL+++NDILD + ++AG ++L      L  +  +V
Sbjct: 165 LKTK---TDETQHHYLSLVNQSATSLLDIINDILDFSKIEAGKLELVIEQTDLLAIGRQV 221

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              I    H+  + + +  D  +     AD+ RL QI   +LSNA+ F+ +G  + L+  
Sbjct: 222 ADMIKLPAHQKKLEMLLNIDPSIARFVWADQIRLRQILINLLSNAVKFTQQGE-IELRIE 280

Query: 714 RDNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESF 764
           R +           F+V++ G  I E   + +F  F        RR  G GLGL+I    
Sbjct: 281 RIHDQPADGLTSLRFAVRDTGIGIAERNQEKIFEAFSQEDSSTTRRFGGTGLGLAISNKL 340

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           + L G  + ++S     +T    I
Sbjct: 341 LGLMGSRLQLTSELGKGSTFFFNI 364


>gi|237713535|ref|ZP_04544016.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262407320|ref|ZP_06083868.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|229446517|gb|EEO52308.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262354128|gb|EEZ03220.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
          Length = 1353

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 6/252 (2%)

Query: 539  MLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  F  +  S+ AE  L     E   + +++K  F  ++S+ELR+PLT I+     +   
Sbjct: 805  VFRFFWMRKSMEAELELERRDKEHQEEINQMKMRFFINISHELRTPLTLILAPLQEIINK 864

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                    Q +Y++    ++  LL+LVN ++D    + G+ +L       + L+ +    
Sbjct: 865  ISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLF 921

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                     I   + S+ +    + D   L  I + +LSNA  ++  G ++ +    +N 
Sbjct: 922  YDKLARHKKITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENN 981

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +  V + G  IP +    +F RF       +  G G+GLS+V+  + LH G + + S 
Sbjct: 982  WLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQRLVELHHGRIELDSE 1039

Query: 778  DEGVTTINCRIP 789
            +   +T +  +P
Sbjct: 1040 EGKGSTFSVYLP 1051


>gi|171319008|ref|ZP_02908135.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171095763|gb|EDT40716.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1088

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 154/374 (41%), Gaps = 28/374 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +     ++    ID    G+ +   D G   L +P      K         +     A 
Sbjct: 356 RRVFESEQLSRTLIDTAPVGLGLIAIDTGEPLLRSPVMAETAKRVMVDAPTLS-----AE 410

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYSIIPLPNAQTMLTFVN 544
              R+  +     L    I +  D      G ++L +S +   Y    +     +  F +
Sbjct: 411 LVRRHAQQPQTGVLRYDRIFALRD-----GGQIDLAVSSARARYRGTDV----LVTAFTD 461

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           VT+  +    L    +A   A+  K++FV  +S+E+R+PL  I+G  +LL    L +L++
Sbjct: 462 VTEKNQLAHELRNAKQAAESANAAKSAFVAAMSHEIRTPLNAILGNLELLS---LATLDA 518

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q   +  I  SS  LL +++DILD + ++AG M          +L        A     
Sbjct: 519 EQRNRLSTIRTSSDGLLAIISDILDFSKIEAGEMAFERIDFDCVELTGRALAMFAPGARA 578

Query: 665 NNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
             +R+    D     S  +D  R+ QI + +LSNA+ F+S G  V L+ A +  +     
Sbjct: 579 KGLRLYGQFDVDSALSMNSDPVRIGQIINNLLSNAVKFTSAGH-VTLRLATEYAEDGATL 637

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + SV++ G  +  +  + +F+ F        RR  G GLGL++ +      GG +   S
Sbjct: 638 LLMSVEDTGIGMTPEQQERLFSAFSQGDASIHRRFGGTGLGLALCKLLAQALGGSIHAES 697

Query: 777 SDEGVTTINCRIPS 790
           +    +    R+P+
Sbjct: 698 TPNVGSRFTVRLPT 711


>gi|160887460|ref|ZP_02068463.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294805850|ref|ZP_06764723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|156107871|gb|EDO09616.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294446949|gb|EFG15543.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1353

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 6/252 (2%)

Query: 539  MLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  F  +  S+ AE  L     E   + +++K  F  ++S+ELR+PLT I+     +   
Sbjct: 805  VFRFFWMRKSMEAELELERRDKEHQEEINQMKMRFFINISHELRTPLTLILAPLQEIINK 864

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                    Q +Y++    ++  LL+LVN ++D    + G+ +L       + L+ +    
Sbjct: 865  ISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLF 921

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                     I   + S+ +    + D   L  I + +LSNA  ++  G ++ +    +N 
Sbjct: 922  YDKLARHKKITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENN 981

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +  V + G  IP +    +F RF       +  G G+GLS+V+  + LH G + + S 
Sbjct: 982  WLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQRLVELHHGRIELDSE 1039

Query: 778  DEGVTTINCRIP 789
            +   +T +  +P
Sbjct: 1040 EGKGSTFSVYLP 1051


>gi|261212267|ref|ZP_05926553.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC341]
 gi|260838875|gb|EEX65526.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC341]
          Length = 1112

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G L +     ++ I 
Sbjct: 429 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIII 488

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 489 SSGQRLATLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSHHLLGKKTLRIINQVP 548

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP + 
Sbjct: 549 ELPVWVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYMDDKIRVQVVDTGQGIPAEQ 607

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 608 LEQIFEPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMVGTTFSFTLPL 665


>gi|221641014|ref|YP_002527276.1| hypothetical protein RSKD131_2915 [Rhodobacter sphaeroides KD131]
 gi|221161795|gb|ACM02775.1| Hypothetical Protein RSKD131_2915 [Rhodobacter sphaeroides KD131]
          Length = 520

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 184/484 (38%), Gaps = 23/484 (4%)

Query: 65  ICDQLSKYHSLLTENNCL--TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFH 122
           +  +  +    +  ++      ++DG+       G        P      L    +L   
Sbjct: 29  LQTRAGRRSEGVFSDSQAGTVFLFDGETLLDATPGARAILALSPARGGPWLRLLAYLVPR 88

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
               L     +L ++G+ F L A       + +   + G     R+   D   +E     
Sbjct: 89  FP-DLEARLSRLARDGR-FTL-ASAAEGEPLLLMAEMRGG--ITRLTIDDPSSAERPRLD 143

Query: 183 -LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  + L+  +   +        ++W     G+++WAN +Y +         +       
Sbjct: 144 HLSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLREAAKRLPPDRDLSWPLP 203

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID----VSK 297
           +LF          +++ +    +       G ++ + +    +  G    A+     V  
Sbjct: 204 RLFD--------RAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E T+ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS    LE
Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            LR    +PE  ++ +W+  I  + K++ +  + DTW LP+GQT  VI   +P G    M
Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYADTWSLPSGQTYRVIGRPHPNGALALM 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           FE+++ ++    +Y   +++    +D + + +AVF P G + ++N A+ +LW  +     
Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNTAYGALWGHDPVETV 435

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G     +        + S  W      + +    R    G + L    ++     PL  
Sbjct: 436 GGGAAVQLCEQWRARSSPSPIWVEAERFLAAL-GPRDPWSGEIRLEDGRLVSCRFAPLTG 494

Query: 536 AQTM 539
             T+
Sbjct: 495 GATL 498


>gi|225390426|ref|ZP_03760150.1| hypothetical protein CLOSTASPAR_04179 [Clostridium asparagiforme
           DSM 15981]
 gi|225043482|gb|EEG53728.1| hypothetical protein CLOSTASPAR_04179 [Clostridium asparagiforme
           DSM 15981]
          Length = 760

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 88/398 (22%), Positives = 160/398 (40%), Gaps = 36/398 (9%)

Query: 419 LTVQVDLETKYNTLVK----VQGETIDHLSEGVA-----VFG----PDGRIKLSNPAFRS 465
           LT   + E K   L      +Q E I  + E        V       DG I++ + A R 
Sbjct: 90  LTRSFESEEKARELFDERYAMQNEAIAAIRESYLGPAEDVTALQKAMDGLIEIQDEALRF 149

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL------E 519
           +    E  +     +  I      YY+E +  D    I+ S D     L   +       
Sbjct: 150 VGTHSEEDI-----LSFIEERVYPYYDEVN--DCLERILVSSDKRIYQLMEDITHTTVAS 202

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
           + +  +L + I+ L     M+   ++ +    ER L E     +KA+  K  F+  +S+E
Sbjct: 203 IGTALLLTFFIVFLTMYSNMVERTSIKELKARERELHEALLLAQKANNAKKDFLSRMSHE 262

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  IIG   +           +    +  I+ SS  LL+L+ND+LD++ +DAG + 
Sbjct: 263 IRTPMNAIIGMAAI--AGAHLDDRGRIEDCLTKITFSSRHLLSLINDVLDMSKIDAGKLT 320

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNA 698
           +N+    +  L   V   I ++        +    G +    + D  R+ QI   +LSN+
Sbjct: 321 VNHEPFRIGQLTESVVSVIDSQARTQEKIFECDISGIRQERLIGDYLRVNQILLNLLSNS 380

Query: 699 MDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQR 751
           + F+ +G  + L+              F V + G  + E+  + ++  F         + 
Sbjct: 381 VKFTPRGGMIRLEIKEIEDQKGRTFLQFVVSDTGIGMSEEFLERLYLPFEQADGQISQKY 440

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            G GLG++I  + + L GG + + S     T    ++P
Sbjct: 441 GGTGLGMAITNNLVELLGGSIDVKSRLGEGTVFTVKLP 478


>gi|77462061|ref|YP_351565.1| hypothetical protein RSP_1521 [Rhodobacter sphaeroides 2.4.1]
 gi|77386479|gb|ABA77664.1| conserved hypothetical [Rhodobacter sphaeroides 2.4.1]
          Length = 520

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 184/484 (38%), Gaps = 23/484 (4%)

Query: 65  ICDQLSKYHSLLTENNCL--TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFH 122
           +  +  +    +  ++      ++DG+       G        P      L    +L   
Sbjct: 29  LQTRAGRRPEGVFSDSQAGTVFLFDGETLLDATPGARAILALSPARGGPWLRLLAYLVPR 88

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
               L     +L ++G+ F L A       + +   + G     R+   D   +E     
Sbjct: 89  FP-DLEARLSRLARDGR-FTL-ASAAEGEPLLLMAEMRGG--ITRLTIDDPSSAERPRLD 143

Query: 183 -LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  + L+  +   +        ++W     G+++WAN +Y +         +       
Sbjct: 144 HLSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLREAAKRLPPDRDLSWPLP 203

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID----VSK 297
           +LF          +++ +    +       G ++ + +    +  G    A+     V  
Sbjct: 204 RLFD--------RAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E T+ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS    LE
Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            LR    +PE  ++ +W+  I  + K++ +  + +TW LP+GQT  VI   +P G    M
Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALM 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           FE+++ ++    +Y   +++    +D + + +AVF P G + ++N A+ +LW  +     
Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALWGHDPVETV 435

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G     +        + S  W      + +    R    G + L    ++     PL  
Sbjct: 436 GGGAAVQLCEQWRARSSPSPIWVEAERFLAAL-GPRDPWSGEIRLEDGRLVSCRFAPLTG 494

Query: 536 AQTM 539
             T+
Sbjct: 495 GATL 498


>gi|55823081|ref|YP_141522.1| sensor histidine kinase [Streptococcus thermophilus CNRZ1066]
 gi|13324643|gb|AAK18825.1|AF327739_2 Hpk2 [Streptococcus thermophilus]
 gi|55739066|gb|AAV62707.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK
           Spy) [Streptococcus thermophilus CNRZ1066]
          Length = 446

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 142/386 (36%), Gaps = 32/386 (8%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L               + ++S+GV      G+I + N   + L    +   
Sbjct: 74  LNDLSDVFRLTHENLIQEKNRLSSVLSYMSDGVIATNRLGQITMINSTAQRLLNL-DRET 132

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +    I +I    + Y       +L +         R +    + L     + +++I   
Sbjct: 133 ATQMSILDILDGENPY----TYSELLSKTPEIHLSRRDANDEFVTLR----VNFALIRKE 184

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 185 SGFISGLVAVLHDATEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 233

Query: 595 KTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                G+LN + +  +++     +  ++ +++D+L L+ +D    +LN         +  
Sbjct: 234 DD---GALNEEIAPNFIKVSLDETNRMMRMISDLLALSRIDNKSTQLNVEMTNFTAFMTY 290

Query: 654 VKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +         +      +  I             D  ++ Q+   IL+NA+ +S  G  +
Sbjct: 291 ILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKMTQVIDNILNNAIKYSPDGGKI 350

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            +     +   I S+ + G  IP+     +F+RF          + G GLGLSI +  + 
Sbjct: 351 TVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVK 410

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            H G +   S     +T    +P  +
Sbjct: 411 QHNGFIWAKSEYGKGSTFTIVLPYDQ 436


>gi|154244154|ref|YP_001415112.1| histidine kinase [Xanthobacter autotrophicus Py2]
 gi|154158239|gb|ABS65455.1| histidine kinase [Xanthobacter autotrophicus Py2]
          Length = 510

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 141/351 (40%), Gaps = 19/351 (5%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           L E   +    G I  +N  F     T             +    S      +  D   A
Sbjct: 159 LPEPALLLSATGEIITANERFNLAIGTT-----------RVGDPLSFVVRVPEVLDAVRA 207

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKN 559
                   R      + L  D  LE  ++PL    +A          D   A        
Sbjct: 208 AAEDGLPRRVEFAERIPL--DRWLEAHVVPLRLEAHAGIRSGGRRAADVPDAVLLTFRDL 265

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              R+ ++++  FV + S+ELR+PL ++ GF + L+        +++  ++  ++A +  
Sbjct: 266 TQQRRVEQMRADFVANASHELRTPLASLSGFIETLQGPARNDAPARER-FLAIMAAQARR 324

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  L++D+L L+ ++        + + L  +L  V  +++    +  + +  + D     
Sbjct: 325 MSRLIDDLLSLSRIELNAHVRPQTKVDLGGILAHVCDTLSPLARDRGVTLDQVKDAVPLE 384

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + DR  L+++F  ++ NA+ + + G  + ++  R+NG  + S+++ G  IP +    + 
Sbjct: 385 VLGDRDELIRLFENLVENALKYGAPGKRIEVRLFRENGTAVVSIRDFGPGIPPEHLPRLT 444

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF          + G GLGL+IV+  +  H G + I S      T + R+
Sbjct: 445 ERFYRVDVAASRDQGGTGLGLAIVKHIVARHRGRLGIDSVLGEGATFSVRL 495


>gi|296111035|ref|YP_003621416.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295832566|gb|ADG40447.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 619

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 164/418 (39%), Gaps = 36/418 (8%)

Query: 385 SETHKDTWHLPNG--QTLHVIVTSNPRGGTIWMFENLTVQVD-LETKYNTLVKVQGETID 441
           ++  + T  + NG    ++ I  S+  G        L+ +V+      N         + 
Sbjct: 208 AQIDEQTTKIANGDYSMVNHIYGSDELGHLAQSVNELSTRVEESTETVNAERNRLDSVLT 267

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           H+++GV      G I + N A  +    +    + G ++ ++            G     
Sbjct: 268 HMADGVLAANRRGEITIINQAAANFVGVDREE-AIGKNVVDLLRL--------KGKRTLR 318

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            ++ + +D R  L    +   D +++  +  +      ++ + V      E+        
Sbjct: 319 DMLENLEDFRIDLS---DDSKDILVQAYVSLIKRQSGFISGLVVVLHNITEQQ------- 368

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             + D  +  FV +VS+ELR+PLT++  + D L    +   +  Q+ ++  +   +  ++
Sbjct: 369 --RIDSERRMFVSNVSHELRTPLTSVRSYVDALAEGAINDPDMAQN-FLGVVQDETQRMI 425

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE---------NNIRIKVI 672
            ++ND+L L+ +D G M++    I LN L N V       +            +  I+  
Sbjct: 426 RMINDLLALSRLDQGTMEVKLEVINLNSLFNFVLNRFDMIIENDAKNADTPNKSYNIQRE 485

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +      D  +  Q+   I++NA+ +S  G T+  +  +     I S+ + G  IP 
Sbjct: 486 FTNEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLGIPR 545

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               ++FNRF        R   G GLGL+I +  +    G + + S +   +T    +
Sbjct: 546 KDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYISL 603


>gi|260220402|emb|CBA27903.1| hypothetical protein Csp_A04610 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 597

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 117/259 (45%), Gaps = 12/259 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  ++    + +  L        +  ++K+ F+ ++S+E+R+P+  ++G  +L + S   
Sbjct: 189 TVRDIEQQRKIDSELRHAKVNAERLSQVKSEFLSNMSHEIRTPMNGVLGMLELARGSSDA 248

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +Q  Y+     S+  LL ++N+ILD + ++A  M+L  S   L  LL E+K     
Sbjct: 249 Q---EQQHYLATAQNSANALLKILNEILDYSKLEAHHMQLESSAWDLRALLEELKVVYTN 305

Query: 661 KMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----R 714
           +  +  +   +  D +     V D  R  QI + +L NA+ F+ +G  V L        +
Sbjct: 306 RCVQKQLEFALHLDAQVPPCVVGDALRTRQILTNLLENAVKFT-EGGHVHLSVRVGKYSK 364

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
                +F VK+ G  +P +   S+F  F        RR  G GLGLSI      L  G +
Sbjct: 365 AKDTLVFEVKDTGIGVPLNQQASIFKAFEQADASTTRRFGGTGLGLSICAELARLMQGAL 424

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S+    +T    +P +
Sbjct: 425 TVRSAPGQGSTFCLEVPLQ 443


>gi|326939717|gb|AEA15613.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 452

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 214 ELGELAHSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 272

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  
Sbjct: 273 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKE 332

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+     D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ 
Sbjct: 333 IQFITTIDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDE 390

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  
Sbjct: 391 GIGIAKEHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILI 448

Query: 787 RIPS 790
           ++P 
Sbjct: 449 KLPL 452


>gi|148359676|ref|YP_001250883.1| response regulator TutC [Legionella pneumophila str. Corby]
 gi|148281449|gb|ABQ55537.1| response regulator TutC [Legionella pneumophila str. Corby]
          Length = 816

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 6/256 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  +    +   A + L E N+ L + D+IK  F  +VS+ELR+PL  I+G  ++L   K
Sbjct: 165 IEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEK 224

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S     +  I  ++ ILL  VND+L+++ +DAG M L+Y+ I L  L+ +     
Sbjct: 225 R--LPSFVLNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQTIALF 282

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++ E      +    +L + + D  ++  +   ILSNA+ F+ + + V ++ A+ N +
Sbjct: 283 EAQIPERKFVFSMDLPDELQAQM-DPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPE 341

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                +++NGS IP D+C+++F RF            G GLGLSI + F+ LHGG +   
Sbjct: 342 TCRLQIEDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAG 401

Query: 776 SSDEGVTTINCRIPSK 791
           ++  G       +P K
Sbjct: 402 NARNGGAIFTIELPLK 417



 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 117/319 (36%), Gaps = 28/319 (8%)

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              H+  +    +   +          +    DDE      T  +L +   +Y I P   
Sbjct: 519 MMPHMSGVEMVHAIREHPPLLKTPIIILTAKADDEL-----TARMLEEGAQDYVIKPFSA 573

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +      N+    +AE  L              + FV H S++L++PL  +      ++
Sbjct: 574 KEFKARVANLILVKKAEDEL--------------DQFVYHASHDLKAPLPAMEHLISWIE 619

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L+ +  +Y+  +   ++ +  L++ +L  A   +G +     TI  + L+ ++ 
Sbjct: 620 EDLGEMLSEQSKKYLLLLRQRASRMSKLLDGLLKYA--QSGYVFDKVRTIHTDRLITDII 677

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAAR 714
           + +          +    +  L         L ++F+ +L N++     K   +I+    
Sbjct: 678 KKLNP-----PQTVTFQLEDTLPVLNTCELPLREVFTALLDNSIRHHHRKDGHIIIGTKE 732

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +  + F V ++G  I +     +F  F +   R +    G+GLSI +  +   GG +S+
Sbjct: 733 KDRFYEFFVADDGPGIEKKYQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISV 792

Query: 775 SSSDEGVTTINCRIPS-KE 792
            S     +      P  KE
Sbjct: 793 ESEKNKGSVFRFLWPKDKE 811


>gi|114324570|gb|ABI63592.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|224798966|gb|ACN62988.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 157/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +      K+    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFYFT 969


>gi|59711315|ref|YP_204091.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114]
 gi|59479416|gb|AAW85203.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114]
          Length = 744

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 133/273 (48%), Gaps = 17/273 (6%)

Query: 524 SVLEYSIIPLPNAQTMLT-FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +LE+  I     QT         DS +A+RA         K  ++K+ F+  +S+E+R+
Sbjct: 330 GILEFDQIGEKLEQTFSELIEAKEDSYKAQRA-------AEKLAQVKSDFLARMSHEIRT 382

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+G + LLK+S   +L  +Q + V  +      LL ++NDILD + ++   +K+N 
Sbjct: 383 PLNGILGISSLLKSS---NLTREQQKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINS 439

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDF 701
           +   L+D+L  +           N+   + +      F+ +D+ RL QI   +LSNA  F
Sbjct: 440 APFKLSDVLENINAIYFPLCKNKNVLFSIENHVNPDVFINSDQVRLTQILFNLLSNAAKF 499

Query: 702 SSKGST-VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGL 756
           + KG   + L   + N D    FSV + G  I  +    +F  F  +  +   +  G GL
Sbjct: 500 TEKGKVKLTLSLNKHNSDYYLQFSVDDTGVGICAEEQTRMFEPFEQSGFSESRKFGGSGL 559

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL+IV+  ++L  G ++I+S+    +T +  IP
Sbjct: 560 GLAIVKQLLDLLKGKITINSTLGVGSTFSVLIP 592


>gi|330501102|ref|YP_004377971.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           NK-01]
 gi|328915388|gb|AEB56219.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           NK-01]
          Length = 598

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 141/362 (38%), Gaps = 19/362 (5%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +  +        +D + +G+ +    GRI+ +NP          + L             
Sbjct: 255 QLLSSEGRLKAVLDSIDDGLVILDEQGRIEHANPVALRQLSWHADILGQPIGPLLPDHAV 314

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                +    +L          ER    G   LL+ ++    +    +   ++   +VT 
Sbjct: 315 DEALRQVLAGELLYEPPADLQIER---DGETRLLAWALTPVQVSEGGSVGAVMVLRDVTK 371

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               ER              +++ F+   S+ELR+P+T +     LL+       + ++ 
Sbjct: 372 QRAFER--------------VRSEFILRASHELRTPITGMHMAFSLLRERLSLPSSGREQ 417

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + +  +      L+ L++D+L+ +    G+  L      L +++ +  Q    K  E  +
Sbjct: 418 ELMRTVDEEMHRLVQLIDDLLNFSRYQNGMQTLQRRPCDLAEMIRQAPQRFVEKTAEREV 477

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +       L     D  +L ++   ++ NA+ +S+ G  V L+  R     I SV+++G
Sbjct: 478 TLVCEVHEPLPRLSLDAAQLERLIDNLIDNALRYSNPGDEVRLQVRRHGEQVIVSVQDDG 537

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IP +    +F  FV    R  + GVGLGL++    + LHGG +S+ S     +T    
Sbjct: 538 EGIPFEQQARIFEPFVQVGRR--KGGVGLGLALAREIVQLHGGQLSVHSRPGEGSTFYFS 595

Query: 788 IP 789
           +P
Sbjct: 596 LP 597



 Score = 39.9 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 19/128 (14%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFV-------ELWEIDLAFLATNPSNDELLEFL 359
               +L ++   + I D+   ++  N   +       ++    +  L  + + DE L  +
Sbjct: 262 RLKAVLDSIDDGLVILDEQGRIEHANPVALRQLSWHADILGQPIGPLLPDHAVDEALRQV 321

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
            +   L E             + +  ET    W L       V V+     G + +  ++
Sbjct: 322 LAGELLYEPP-------ADLQIERDGETRLLAWALT-----PVQVSEGGSVGAVMVLRDV 369

Query: 420 TVQVDLET 427
           T Q   E 
Sbjct: 370 TKQRAFER 377


>gi|294665140|ref|ZP_06730442.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605101|gb|EFF48450.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 1214

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 150/389 (38%), Gaps = 28/389 (7%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH- 479
             +V L      L  V G+    + +G      D  I    P F +   T       G   
Sbjct: 690  ERVSLRRGEREL-DVTGKAPLQVQDG----DRDLHIVARMPTFTNPESTSYRFRLSGYDP 744

Query: 480  -IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---------LSDSVLEYS 529
               ++ +T  R ++          +     D   S   TL                L   
Sbjct: 745  DWIDVGSTGERLFSRLPSGHYTLEVQGRTADGIWSASQTLRFQVLPPWWLSPWGLSLLAL 804

Query: 530  IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +     A  +L +      + A +    K E   +A   K  F+  + +E+R+P+T ++G
Sbjct: 805  LTVCVIAAAILLYRRRLRRLNAWQLAVHKQELAEQASLAKTRFLATLGHEVRTPMTGVLG 864

Query: 590  FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             ++LL  +   + +  Q  Y E I  +   LL LVND LDLA +++G ++L++    +  
Sbjct: 865  MSELLLKT---TQDPTQRSYTESIRRAGAHLLRLVNDALDLARIESGRLELDFQPFSVRQ 921

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST 707
            L+ EV+  +A    E  +R  +   G LG      D  R+ QI   +L+NA+ F+ +G  
Sbjct: 922  LVAEVEALMAPLAQERGLRFSLEI-GLLGDITASGDSTRIRQILLNLLNNAIKFTERG-V 979

Query: 708  VILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVE 762
            V LK           F V + G  I  +    +F RF          +  G GLGL+I +
Sbjct: 980  VALKLTTLGSYQGLRFEVADTGPGINAEQKARLFQRFEQGDGAKTTSRYGGSGLGLAICQ 1039

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  GGH+ + S     T     +P +
Sbjct: 1040 ELAMAMGGHIEVISRLGAGTRFVVDLPLR 1068


>gi|255034653|ref|YP_003085274.1| ATP-binding region ATPase domain-containing protein [Dyadobacter
            fermentans DSM 18053]
 gi|254947409|gb|ACT92109.1| ATP-binding region ATPase domain protein [Dyadobacter fermentans DSM
            18053]
          Length = 1871

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 12/289 (4%)

Query: 507  FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            F  ER  L   L       +E +I+     Q +          + E  +  + + + +  
Sbjct: 1428 FTLERTQLIKLLSGQIAVAIENAILYEKLEQKVAVRTAEIQVQKEE--IERQKQLVEQKS 1485

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
              K  F  ++S+E+R+P+T I+G ++L+  +    LN KQ +Y   I  SS  LL ++ND
Sbjct: 1486 RFKEQFFANMSHEIRTPMTAILGMSELIFDT---PLNEKQLEYARGIRYSSENLLAIIND 1542

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQ 685
            +LD + ++AG          + D +  +   +     E  + +++  D  +    + D  
Sbjct: 1543 VLDYSKIEAGKFSFINKPFQVGDRMERLGYILRVIAEEKGLELRITVDSDVSPQVIGDPI 1602

Query: 686  RLLQIFSKILSNAMDFSSKGST-VILKA-ARDNG--DFIFSVKNNGSSIPEDMCKSVFNR 741
            RL QI   +  NA+ F+  GS  + +   +RD G     FSV + G  I ED  + +F  
Sbjct: 1603 RLHQILLNLAGNAVKFTENGSVSIHVAVLSRDAGQEQLQFSVADTGIGIAEDKLEYIFET 1662

Query: 742  FVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F    +    ++ G GLGL I    +   GG + ++S     T     +
Sbjct: 1663 FTRIDDDSNSRQSGTGLGLFIARKLVEEQGGRMQVTSRVGHGTEFRFDL 1711


>gi|261417770|ref|YP_003251452.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319767417|ref|YP_004132918.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261374227|gb|ACX76970.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317112283|gb|ADU94775.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 468

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 129/293 (44%), Gaps = 15/293 (5%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             ++    +  ++++   E +++   E  I             +  +  R   A  +  +
Sbjct: 183 RRMVRQMTEPLQAMEQAAERMAEGRYEADI----------PVRSDDEIGRLAEAFNQMAD 232

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A+ K DE K  F+ +VS+ELR+PL+ + G+++ L    L     ++  Y+  I   +  +
Sbjct: 233 AIAKEDERKREFLANVSHELRTPLSYMKGYSEALLAG-LAKTKEEEKAYLRLIHRETERM 291

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+LDLA ++   + L  + +    ++ +V  +      +  I +    D  +   
Sbjct: 292 ERLVRDLLDLARLEGQSVPLERAPVAFAQVIEDVIATYEPIAAQKRIELACELDYDII-V 350

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVF 739
             D  RL Q+   +L NA+ ++ +G  V ++ +R    +    +++ G  IP+D    + 
Sbjct: 351 NGDANRLEQVVRNLLDNAIRYTPEGGVVTVRLSRLSEAEGELVIQDTGKGIPKDQLPFLG 410

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF        R   G GLGL+IV+  ++LH G +   S      T+  R+P 
Sbjct: 411 QRFFRVDRARTRKEGGTGLGLAIVKQIVSLHDGAIRFDSDLGRGMTVFVRLPL 463


>gi|291287635|ref|YP_003504451.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884795|gb|ADD68495.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 1067

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 163/392 (41%), Gaps = 27/392 (6%)

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           S+ + G + +  + T +V     +  L+K       +    VA+      + L    F  
Sbjct: 271 SSDQIGYLLLSRDTTAEVSA--MHTELLKQVIIIFSYALAAVALLS----VILIKLIFSP 324

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNES--DGWDLFAAIITSFDDERKSLQGTLELLSD 523
           L K          HI  +              G    A +  +F+     L  + E ++ 
Sbjct: 325 LDKIT-------NHITAVQKETDIPIKPVIIKGKSEIATLAAAFNLMNVKLAESFERINT 377

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            + +   I     + +       +       L      ++ A+E K+ F+  +S+E+R+P
Sbjct: 378 QMHQIQEINTSLERRVSERTQQLELTNTR--LKNAMGEIQFANEAKSEFLASMSHEIRTP 435

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  ++G + L+  ++   L  KQ  Y+  I +S+ +LL +VND+LD + ++AG ++L   
Sbjct: 436 MNAVLGLSYLMMQTE---LTGKQYDYISKIRSSANLLLEIVNDVLDFSKIEAGKLELETD 492

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
            + L D +  +   I   + + N+ +++  D  +    V D  R+ Q+ + + +NA  F+
Sbjct: 493 VMNLKDNIKRIAGIIEVTVSKKNVSVQLEIDENIPDYLVGDSLRITQVLNNLATNAAKFT 552

Query: 703 SKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
            +G   I    L   ++      +V + G  IP D    +F+ F     + Q++  G GL
Sbjct: 553 EQGHIEISAFLLTKNKNYAKIRITVSDTGIGIPTDKIPILFDSFTQVKRKNQKKQSGSGL 612

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI +  +N     +++ S +   +     +
Sbjct: 613 GLSISKKILNAMESDITVESKEGEGSVFTFIL 644


>gi|169835706|ref|ZP_02868894.1| two-component sensor kinase, probably involved in phosphate sensing
           [candidate division TM7 single-cell isolate TM7a]
          Length = 660

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 148/367 (40%), Gaps = 34/367 (9%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I  +S+GV +    G+I L NPA + +        + G HI ++        N     D
Sbjct: 178 IIRSISDGVIMTKDSGQIILINPAAQRMIGWSAAD-ALGLHINSVLKFEDEKGNP--ISD 234

Query: 499 LFAAIITSFDDER-KSLQGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERAL 555
               ++ S  +++ + +   +   S+  L  S  I PL     ++ F + T     ER  
Sbjct: 235 TAHPVVVSLANKKVQRINLVVVTKSNKKLNISLMITPLDEGGVIVVFRDTTKERAEEREQ 294

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E              F+   S+E+R+P+ +I G+  L    K+  +++K  +Y+     
Sbjct: 295 AE--------------FISTASHEMRTPVASIEGYLGLALNPKVSKIDAKAYEYISKAHE 340

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  L  L+ D+L+++  + G +K   + +   D+  +  + +  +  E  + +     G
Sbjct: 341 SAQYLGRLLRDLLEISRAEDGRLKNRITAVNAIDISRKATEDLIKEAREKGLNLLYKPTG 400

Query: 676 -----------KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
                       +    AD+ RL +  S ++ NA+ ++  G  + +     N    FSV 
Sbjct: 401 GRSKSGDVTISPVLYVRADKDRLQECLSNLIENAIKYTPSG-QIAVDVNASNEYIRFSVS 459

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +    +F +F    +   R   G GLGL +    +    G +  +S+    +
Sbjct: 460 DTGIGIPPEDIPHLFQKFYRVDNSDTREINGSGLGLYLTRRMVESMNGRIGATSTRNKGS 519

Query: 783 TINCRIP 789
           T    +P
Sbjct: 520 TFYIDLP 526


>gi|260223179|emb|CBA33482.1| hypothetical protein Csp_B19280 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 450

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 143/373 (38%), Gaps = 10/373 (2%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +     +           I+++  G  V   DGR+   NP+   +       L      
Sbjct: 72  ERYQAIEELRKSEARYRSVIENVGVG-VVVVQDGRMVFVNPSMERIVGHSTQALMAMPFT 130

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ--- 537
             I         E     L    +    +E  S +   +      L+ S + L       
Sbjct: 131 GTIHPDDVPAVVERHQRRLRGEPV----EEMYSFRIITDKGEVRTLDLSAVLLQWGHRDA 186

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+L  V+ T  V AE+      +   + +++K+ F+   S+E R+PL  I G  DLL   
Sbjct: 187 TLLFVVDATARVEAEQNQKRALQQQIELNDLKSRFITMASHEFRTPLATIHGSVDLLMHY 246

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  K+   +  I  +   + +++ ++L +   DAG ++       +      +   
Sbjct: 247 DDRMPVDKKRLTLLKIDDAVERMTHMLENVLVIGRSDAGRLQFKPQPSQVAVFCKSLVDE 306

Query: 658 IATKMHE--NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + + M E    I++ +       +++ D   +  I   +LSNA+ +S  G  V L+    
Sbjct: 307 LRSAMAEPFRRIQMAMDLPRDTDAYLVDEVLIRNIVGNLLSNAIKYSPHGGQVTLRVRPR 366

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            G+ + +V + G  IP      +F  F   ++ G   G GLGL+IV   +  HGG +S+ 
Sbjct: 367 PGELVITVSDQGIGIPLADQPQLFESFHRASNVGNISGTGLGLAIVRDAVQCHGGSISLQ 426

Query: 776 SSDEGVTTINCRI 788
           S+    +T    +
Sbjct: 427 STPGEGSTFTVVL 439


>gi|56420908|ref|YP_148226.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380750|dbj|BAD76658.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 468

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 129/293 (44%), Gaps = 15/293 (5%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             ++    +  ++++   E +++   E  I             +  +  R   A  +  +
Sbjct: 183 RRMVRQMTEPLQAMEQAAERMAEGRYEADI----------PVRSDDEIGRLAEAFNQMAD 232

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A+ K DE K  F+ +VS+ELR+PL+ + G+++ L    L     ++  Y+  I   +  +
Sbjct: 233 AIAKEDERKREFLANVSHELRTPLSYMKGYSEALLAG-LAKTKEEEKAYLRLIHRETERM 291

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+LDLA ++   + L  + +    ++ +V  +      +  I +    D  +   
Sbjct: 292 ERLVRDLLDLARLEGQSVPLERAPVAFAQVIEDVIATYEPIASQKRIELACELDYDII-V 350

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVF 739
             D  RL Q+   +L NA+ ++ +G  V ++ +R    +    +++ G  IP+D    + 
Sbjct: 351 NGDADRLEQVVRNLLDNAIRYTPEGGAVTVRLSRLSEAEGELVIQDTGKGIPKDQLPLLG 410

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF        R   G GLGL+IV+  ++LH G +   S      T+  R+P 
Sbjct: 411 QRFFRVDRARTRKEGGTGLGLAIVKQIVSLHDGAIWFDSDLGRGMTVFVRLPL 463


>gi|300865119|ref|ZP_07109944.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336890|emb|CBN55094.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 915

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 17/250 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E   A   A+  K+ F+ ++S+ELR+PL  I+G+  +L  SK  ++     + +  I
Sbjct: 429 ELQEAKLAAELANSAKSEFLANMSHELRTPLNGILGYAQILMRSK--NIQETDLKGLGII 486

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
               + LL L+NDILDL+ ++A  M++  +       L  V + +  K  +  I      
Sbjct: 487 QQCGSHLLTLINDILDLSKIEARKMEIYPNQFHFLAFLQAVSEIVRIKAEQKGITFISQF 546

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDN--------GDF 719
           D  L  S  AD +RL Q+   +L NA+ F+ +GS      VI  +  D            
Sbjct: 547 DPALPVSVQADEKRLRQVLINLLGNAVKFTEEGSVTFKVGVIESSTIDAEASTFNAINKI 606

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            F +++ G  + E+  + +F+ F      + +  G GLGL+I    + +    + ++S  
Sbjct: 607 RFQIEDTGLGMSEEQKQKIFDPFEQVGDSKRRAEGTGLGLAISSKIVEVMSSQIRVTSQL 666

Query: 779 EGVTTINCRI 788
              +     +
Sbjct: 667 GEGSQFWFDL 676


>gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 909

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 129/248 (52%), Gaps = 6/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N T   +  + L E  +    +D +K++F+ ++S+E+R+PL  I+GF++L+         
Sbjct: 526 NNTKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM---VYSEDP 582

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++ +Y+  I +++ +LL L+NDILDL+ +++GI+     T  L  + NE+   I  K+ 
Sbjct: 583 AEKEEYMSIIQSNNELLLRLINDILDLSKIESGILDCKRETFNLAKVCNELYTMIQPKIT 642

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             ++  ++ +         DR RL Q++   L+NA+  +  G  + +  + +       V
Sbjct: 643 NPDVEFQMDNSSPDCWIFLDRSRLKQVWMNYLTNAVKCTKSG-YIKMGYSIEREGIRIYV 701

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +++G  IPE++ + VF RF       Q  G GLGL+I  + I   GG V  +S+    +T
Sbjct: 702 EDSGVGIPEELQERVFGRFQKLNEFAQ--GTGLGLAISRAIIEGAGGEVGFTSTPGIGST 759

Query: 784 INCRIPSK 791
               IP +
Sbjct: 760 FWAWIPCE 767



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 95/299 (31%), Gaps = 34/299 (11%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-------PSND 353
             DQL     I   L ++I I+D N  L+  N   ++++ +       N       P  D
Sbjct: 25  TKDQLLFAESIYACLPMSIEIYDTNGILRSINEHALQMYGVTDKTTVVNIVNLFNSPYMD 84

Query: 354 ELL--EFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           E L     R  + + E + ++   K+N +   ++  T          + + +        
Sbjct: 85  ETLKNRIQRGEDIVLEFEYDFDRIKDNAYFSTQNKNTIIYE-----AKVVPLRSKEGEII 139

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G I +  ++T   + E + +   K     ++  S    V+    +    NP         
Sbjct: 140 GHILLSNDVTAIKEAEFRTDESKKNLEMAMEAASMSSWVYDVYKK--TFNPLHGDPVAKN 197

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-- 528
              L    +I           +  D   L   +    + E +    TL   ++   +Y  
Sbjct: 198 NTTLDQILNI----------LHPQDHEPLIQLLSQLTNKEIQQGNITLRFYNEEEKQYRY 247

Query: 529 --SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY---ELRS 582
             S++ L         +  T     ER    K      A       V ++ +   ++R+
Sbjct: 248 YESMMRLSFEHFGKLQIIGTQLDITERMQMVKKTQELIAKRELAMKVSNIIHWDFDVRT 306


>gi|294647433|ref|ZP_06725019.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292637224|gb|EFF55656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 1298

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 6/252 (2%)

Query: 539 MLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +  F  +  S+ AE  L     E   + +++K  F  ++S+ELR+PLT I+     +   
Sbjct: 750 VFRFFWMRKSMEAELELERRDKEHQEEINQMKMRFFINISHELRTPLTLILAPLQEIINK 809

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                   Q +Y++    ++  LL+LVN ++D    + G+ +L       + L+ +    
Sbjct: 810 ISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLF 866

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                    I   + S+ +    + D   L  I + +LSNA  ++  G ++ +    +N 
Sbjct: 867 YDKLARHKKITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENN 926

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +  V + G  IP +    +F RF       +  G G+GLS+V+  + LH G + + S 
Sbjct: 927 WLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQRLVELHHGRIELDSE 984

Query: 778 DEGVTTINCRIP 789
           +   +T +  +P
Sbjct: 985 EGKGSTFSVYLP 996


>gi|114324572|gb|ABI63593.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|224798968|gb|ACN62989.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 157/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +      K+    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFYFT 969


>gi|229124238|ref|ZP_04253430.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201]
 gi|228659540|gb|EEL15188.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201]
          Length = 484

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 126/271 (46%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           ++ K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YTDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|113475172|ref|YP_721233.1| multi-sensor signal transduction histidine kinase [Trichodesmium
           erythraeum IMS101]
 gi|110166220|gb|ABG50760.1| multi-sensor signal transduction histidine kinase [Trichodesmium
           erythraeum IMS101]
          Length = 716

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 172/449 (38%), Gaps = 73/449 (16%)

Query: 410 GGTIWMFENLTVQVDLETKYN----TLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFR 464
           G  I  F  +  Q++   K N    T  K + ET+   +++G  +   + ++ L NP  R
Sbjct: 253 GELILSFNEMAEQLENYKKQNIEKLTAEKAKLETLVSTIADGALLLDANLQLILVNPTAR 312

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ----GTLEL 520
            ++  EE ++  G    N+        N          I     + R +L      T+ +
Sbjct: 313 RIFSWEEKKVIGGKVTDNLPVAVQMELNRPLYQIATGEIEGG--EYRCTLDEPNKRTIRV 370

Query: 521 LSDSVLEYS-----------IIPLPNAQTMLTFVNVTDSVRAERAL-------------- 555
           L  +VL Y            I    ++ +      V +    E  L              
Sbjct: 371 LLTTVLLYRASGTESLCKSCIYDAYDSCSSANRPVVYECTLYENKLGTDFISPYRNSLKG 430

Query: 556 ----TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                +      + ++ K+ F+ +VS+ELR+PL NI  F + L          ++ +++E
Sbjct: 431 IAMTVQDITREVELNDAKSQFISNVSHELRTPLFNIKSFIETLHEYGEDLSEVERREFLE 490

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             +  +  L  LVND+LDL+ +++  M  + + + +   + +  ++      +  I +  
Sbjct: 491 TANHETDRLTRLVNDVLDLSRLES-CMIYHLNAVDVAQPIEQTLRTYHLNAKDKKIELNY 549

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------------------- 712
             +  L + V     LLQ+F+ ++ NAM F+  G  ++++A                   
Sbjct: 550 DIESNLPTVVGHYDLLLQVFANLVGNAMKFTEPGGRIVIRAYLLESDIEIEQIEQGGWIV 609

Query: 713 ------------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLS 759
                         +N      + + GS I  +  +++F RF    +R     G GLGLS
Sbjct: 610 SPPPPRPTELNLKSNNQFVRIEISDTGSGIEPEDQEAIFERFFRVENRVHTLEGTGLGLS 669

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           IV + I+ H   V++ S     TT    +
Sbjct: 670 IVRNIIDKHHSKVNLVSELGVGTTFWFDL 698


>gi|238920517|ref|YP_002934032.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Edwardsiella ictaluri 93-146]
 gi|238870086|gb|ACR69797.1| sensor kinase protein RcsC [Edwardsiella ictaluri 93-146]
          Length = 984

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 158/366 (43%), Gaps = 31/366 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN                  +I      
Sbjct: 382 RLEEHEQFNRKIVASAPVGISILRARDGSNILSNELA-------------HNYISQFTPE 428

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +        +   +++     + ++LQ +         + +I            V+V+
Sbjct: 429 DRQRITRI-ICEEPISVLDVITVQNQNLQISFVRSRYRNEDVAI---------CAMVDVS 478

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    +L  + 
Sbjct: 479 ARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK---TLPEEV 535

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  +S SS +LL ++NDILD + +++  +K+     V  +++  +  +    +    
Sbjct: 536 QRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGNYLPLVVRKR 595

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    + ++      D  R+ Q+ S +LSNA+ F+  G  +IL+A  ++    F V++
Sbjct: 596 LTLYCFIEPEVPEALSGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVNDFYLEFRVRD 654

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       QR   G GLGL+I E  ++L  G +++ SS    + 
Sbjct: 655 TGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAVESSPGLGSI 714

Query: 784 INCRIP 789
              R+P
Sbjct: 715 FTIRLP 720


>gi|312891036|ref|ZP_07750560.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311296503|gb|EFQ73648.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1400

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 159/396 (40%), Gaps = 37/396 (9%)

Query: 411  GTIWMFENLTVQVDLETKYNTLV-KVQGETIDHLSEG-------VAVFGPDGRIKLSNPA 462
            G + +  ++T   +L  ++N  V  ++   ++  +         +A F  +      N A
Sbjct: 721  GHVILNHSITETHELTLRHNENVFSIEFAAVNFFNPAKIKHAYKLAGFDKN-----WNIA 775

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL- 521
               + K     L PGT+   + A             L   ++      R +    L +L 
Sbjct: 776  DNRVRKASYTNLDPGTYTFQLRAAGEDGRWTEKPLTLKITVLPPI--WRTAWACLLYILM 833

Query: 522  -SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
               ++L      +   +           V+  R L          D +K  F  +VS+E 
Sbjct: 834  GIGTLLLIRQRGIRKLKADFVIQQERQEVQQMREL----------DLMKIKFFTNVSHEF 883

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+PL+ I+   D L      S +++ ++++  I+ +   LLNLVN +LD   ++   ++L
Sbjct: 884  RTPLSLILAPVDKLLKQ---STDAEINKHLHMINRNGKRLLNLVNQLLDFRKMEVNELRL 940

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            +     +   + +   S +       + +   +  +      D  +  +I   +LSNA  
Sbjct: 941  HSKRADIVKFIEDAAYSFSDIAESKKVTLCFNTQIESIITSFDEDKFERILFNLLSNAFK 1000

Query: 701  FSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRG 753
            F+++G  + +K + D     +      V +NG  IP D    +F+RF  N   G    +G
Sbjct: 1001 FTNEGGKIEVKLSFDDFFAVDKMLKIEVTDNGIGIPADKLDKIFDRFFQNDTPGSMVNQG 1060

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             G+GL+I + F+NLH G +S+ S     +T    +P
Sbjct: 1061 SGIGLAITKEFVNLHHGTISVKSVVNKGSTFVVLLP 1096


>gi|307610980|emb|CBX00603.1| sensor histidine kinase [Legionella pneumophila 130b]
          Length = 773

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 130/256 (50%), Gaps = 6/256 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  +    +   A + L E N+ L + D+IK  F  +VS+ELR+PL  I+G  ++L   K
Sbjct: 165 IEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGPLEMLLAEK 224

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S     +  I  ++ ILL  VND+L+++ +DAG M L+Y+ I L  L+ +     
Sbjct: 225 --KLPSFVQNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQTIALF 282

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++ E  +   +    +L + + D  ++  I   ILSNA+ F+ + + V ++  + N +
Sbjct: 283 EAQIPERKLVFSMDLPDELQAQI-DPDKIQHILINILSNAIKFTPQNAKVRIRLVQINPE 341

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                +++NG  IP D+C+++F RF            G GLGLSI + F+ LHGG +   
Sbjct: 342 TCRLQIEDNGPGIPSDLCETIFERFFQIEEPTTRTVGGTGLGLSIAKDFVELHGGSILAG 401

Query: 776 SSDEGVTTINCRIPSK 791
           ++  G       +P K
Sbjct: 402 NARNGGAIFTIELPLK 417



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 88/227 (38%), Gaps = 22/227 (9%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T  +L +   +Y I P    +      N+    +AE  L              + FV H 
Sbjct: 555 TARMLEEGAQDYVIKPFSAKEFKARVANLILVKKAEDEL--------------DQFVYHA 600

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S++L++PL  +      ++      L+ +  +Y+  +   ++ +  L++ +L  A   +G
Sbjct: 601 SHDLKAPLPAMEHLISWIEEDLGEMLSEQSKKYLLLLRQRASRMSKLLDGLLKYA--QSG 658

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +      I  + L+ ++ + +          +    +  L         L ++F+ +L 
Sbjct: 659 YVFDKVRIIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLNTCELPLREVFTALLD 713

Query: 697 NAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           N++     K   +I+     +  + F V ++G  I +++    FN F
Sbjct: 714 NSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKNIKTEFFNYF 760


>gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1095

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 14/252 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +    ER L +  E    A   K+ F+ ++S+E+R+PL  ++G   L +T++   L+++Q
Sbjct: 699 ERKANERDLLKAKELAEAASRSKSEFLANMSHEIRTPLNGVLGMLQLAQTTR---LDAEQ 755

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +V+   AS   LL ++NDILD + ++AG +++      L   L++V  +   +  +  
Sbjct: 756 RDFVDTALASGRSLLAIINDILDFSKIEAGKLEVITEPFSLTPFLDDVLTTFRGEARDKG 815

Query: 667 IRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------ARDNGD 718
           + + V    G        + R+ QI   ++ NA+ F+ +GS V +               
Sbjct: 816 LTLAVDIWPGTPEHLTGGKSRVRQILFNLVGNAIKFTDQGS-VTISVCPLGPDPRDGRTR 874

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISS 776
            +FSV + G  IP+ M   +F  F         + +G GLGL IV+  I L GG + I S
Sbjct: 875 LLFSVSDTGIGIPDAMVDLIFEPFTQVDGSYMRRHQGAGLGLGIVKRLIGLLGGSMCIDS 934

Query: 777 SDEGVTTINCRI 788
                TT++  +
Sbjct: 935 KTGRGTTLHVVL 946



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 113/321 (35%), Gaps = 49/321 (15%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E+AE     K L N I+  + L D++   V+++D  G  L  N +++   E  G+  ++ 
Sbjct: 136 EIAEHQRTQKALGNQIAFLQTLIDAVPNQVFYKDAQGRYLGCNKAWE---EFAGMTREQV 192

Query: 237 IGESRKLFKEEI--------KKRMISSSALEKNFCETVSTLEHGN---NKSYKIVRVLNS 285
           +G   + F             + ++++   ++    T       +    K+         
Sbjct: 193 VGRRVEEFAPPAESPVFVSKDRELMATGGHQEYEQVTRFGGIERDILIRKAVFNGPDGTP 252

Query: 286 FGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFD-QNRYLQFHNRSFVELWE 340
            G  G+  D++++  ++ +L  + E    IL    ++I + D ++    F N    EL+ 
Sbjct: 253 GGIVGVLTDITRQKDISRRLQRSEERLRTILETSPLSIIVVDMESGQTLFCNARGAELFG 312

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK-----SSETHKDTWHLP 395
           +D A                 A  +  +  +  W+  +    +       +  +      
Sbjct: 313 VDRA----------------RAQGMSTRAFYADWQARVDLFERIMQEGRLDNVEVEMVRA 356

Query: 396 NGQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           +G       ++     + R      F ++T + D+E        +   + D ++    + 
Sbjct: 357 DGSRFWTQASAVLMVLDGRKAAFIAFWDVTARKDIEESLRKFQFIASASQDMMT----LI 412

Query: 451 GPDGRIKLSNPAFRSLWKTEE 471
             D   + +N A+       E
Sbjct: 413 NRDFVFEAANEAYLDHHGRPE 433



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 83/303 (27%), Gaps = 34/303 (11%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN- 349
           IA     +  + +Q+     ++  +   +   D        N+++ E   +    +    
Sbjct: 137 IAEHQRTQKALGNQIAFLQTLIDAVPNQVFYKDAQGRYLGCNKAWEEFAGMTREQVVGRR 196

Query: 350 ------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVI 403
                 P+   +                         + +     K  ++ P+G      
Sbjct: 197 VEEFAPPAESPVFVSKDRELMATGGHQEYEQVTRFGGIERDILIRKAVFNGPDGTP---- 252

Query: 404 VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPA 462
                 GG + +  ++T Q D+  +     +     ++     + V   + G+    N  
Sbjct: 253 ------GGIVGVLTDITRQKDISRRLQRSEERLRTILETSPLSIIVVDMESGQTLFCNAR 306

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
              L+  +  R + G   R   A            DLF  I+     +   ++      S
Sbjct: 307 GAELFGVDRAR-AQGMSTRAFYADWQARV------DLFERIMQEGRLDNVEVEMVRADGS 359

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
               + S + +        F+   D                +    K  F+   S ++ +
Sbjct: 360 RFWTQASAVLMVLDGRKAAFIAFWD---------VTARKDIEESLRKFQFIASASQDMMT 410

Query: 583 PLT 585
            + 
Sbjct: 411 LIN 413



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 98/312 (31%), Gaps = 34/312 (10%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETE 229
           + G+ +++       ++L       + + ++    +   D ++G  L+ N    +  E  
Sbjct: 255 IVGVLTDITRQKDISRRLQRSEERLRTILETSPLSIIVVDMESGQTLFCNA---RGAELF 311

Query: 230 GIVFQKAIGESRKLF--KEEIKKRMISSSALEKNFC--ETVSTLEHGNNKSYK---IVRV 282
           G+   +A G S + F    + +  +      E      E       G+    +   ++ V
Sbjct: 312 GVDRARAQGMSTRAFYADWQARVDLFERIMQEGRLDNVEVEMVRADGSRFWTQASAVLMV 371

Query: 283 LNSFGEAGIAI-DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
           L+    A IA  DV+    + + L     I       + + +++   +  N ++++    
Sbjct: 372 LDGRKAAFIAFWDVTARKDIEESLRKFQFIASASQDMMTLINRDFVFEAANEAYLDHHGR 431

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
             + +  +P  +            P      T +  ++  + S       ++        
Sbjct: 432 PESGVIGHPVAELWGAGPFEKAIRPRLEKCLTGRSVVYREWFSFPVSGRRFY--EVTMYP 489

Query: 402 VIVTSNPRGGTIWMFENLTVQ--------------------VDLETKYNTLVKVQGETID 441
                N       +  ++T +                     DLE  Y  +  +  + I+
Sbjct: 490 YWGEGNDVTHVATVTRDITTRQYNETVATMLYRISGAVSTTTDLEDLYQRIHAILNDNIE 549

Query: 442 HLSEGVAVFGPD 453
             +  +A+    
Sbjct: 550 AANFFIALLDKQ 561


>gi|256376337|ref|YP_003099997.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255920640|gb|ACU36151.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 399

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 162/373 (43%), Gaps = 20/373 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +++ + ++  + +      V +   D +       F+S    +    S G  + + A 
Sbjct: 27  EERFDRITRLARDVLHTPVAVVTLVDTDRQW------FKSCAGFDATETSRGISVCSHAI 80

Query: 486 TCSRYYNESDGWD--LFAAIITSFDDERKSLQGT-------LELLSDSVLEYSIIPLPNA 536
                +   D  D   FA       D  +   G          + +  VL+     L +A
Sbjct: 81  QQDDVFEVPDLSDDRRFAGFPVVTKDHLRFYAGQPISAPSGHRVGTLCVLDREPRTL-SA 139

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q      ++   V  E A+ +   A + A+ +K  F   VS+ELR+PLT++ G  +LL +
Sbjct: 140 QERQRLKDLAAWVELECAVVQSTLAAQDAERVKRDFTALVSHELRTPLTSVHGSLELLAS 199

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            + G + ++ S+ VE    ++  L+ L ND+LDL+ V +G ++L  + + L D++     
Sbjct: 200 GRFGEMQAQASRLVEIAVKNTDRLVRLANDVLDLSRVQSGQLRLRPAPVELADVVENAVI 259

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++       ++ +    D    +   D  RL+Q+ + +L+NA+  S  G  V +  + + 
Sbjct: 260 AVEGTAERCHVPLVTRKDP--VTVRGDADRLVQVVTNLLANAVKVSPPGQPVEVGCSVEG 317

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                 V+++G  I +D  K +F  FV    +    G GLGL+I    +  HGG +++ S
Sbjct: 318 SVARVYVRDHGMGITDDEVKRIFEPFVQLGAKS--GGAGLGLAITRGIVESHGGTIAVES 375

Query: 777 SDEGVTTINCRIP 789
                +T    +P
Sbjct: 376 EAGIGSTFTVILP 388


>gi|295676500|ref|YP_003605024.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295436343|gb|ADG15513.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 657

 Score =  253 bits (647), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 91/517 (17%), Positives = 184/517 (35%), Gaps = 51/517 (9%)

Query: 302 NDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
              L    + L      +AI    +    +  N    +L  +D          D     L
Sbjct: 20  EGILRLARKSLERAGCRVAICGGVEAARERLANGGL-DLLVLDYQLNGPETGLD-FFRRL 77

Query: 360 RSAN-KLP---------EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-HVIVTSNP 408
           R+   ++P         E    +  +  +  V   S  + D       + L  V +    
Sbjct: 78  RAEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVERVLSQVRLQRAS 137

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
               +          D E  Y TL        + L   V      G     +  +     
Sbjct: 138 DEALLL--------RDRELHYRTLS-------ETLPHLVVTCDAAGDCDFLSKQWYDYTG 182

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             E+    G+H             E        A+ +   D R  ++           + 
Sbjct: 183 LPEH----GSHGLAWLDAVHPDDREQIRQSWLKAVASRDGDYRHEMRIRRHDGEYRWFDM 238

Query: 529 SIIPLPNAQTMLTFVN------------VTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            ++ + +A+  ++               + +  R  ++     +A  +A+  K+ F+  +
Sbjct: 239 RVVAVRDAEGKVSKWFGSCTDIHPQREAIEERERLLQSEQAARQAAEEANRAKDRFLAML 298

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PLT ++    +L+   +  L  +    V  I  +  +   L++D+LDL  V  G
Sbjct: 299 SHELRTPLTPVLAGASVLEM--IPELPEQARASVRMIRRNVELEARLIDDLLDLTRVANG 356

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            ++L+  T+ ++++++ V +   +++      + V         +ADR RL Q+   ++ 
Sbjct: 357 KLRLSLETVDVHEVIDSVLELFRSEIQVKQQDVHVDKRATHHYVLADRARLQQMLWNLIR 416

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGV 754
           NA  F+  G  + ++   +      SV++ G  I  +    +FN F         Q  G+
Sbjct: 417 NAAKFTPDGGHIYVRTRDERMQVQISVEDTGIGIEPEQIGKLFNAFEQGDQSMTRQFGGL 476

Query: 755 GLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
           GLGL+I ++  ++HGG V+  S       T    +P+
Sbjct: 477 GLGLAITKALTDVHGGTVTAQSPGPHCGATFTITLPT 513


>gi|222526335|ref|YP_002570806.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           sp. Y-400-fl]
 gi|222450214|gb|ACM54480.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           sp. Y-400-fl]
          Length = 425

 Score =  253 bits (647), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 142/386 (36%), Gaps = 47/386 (12%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           L      L       ID    GV V   + RI   N     L  T+      G     + 
Sbjct: 66  LAIHRQPLFLALAAAIDT---GVIVINTERRIVFHNDTALHLLATQSPMQDSG-----LI 117

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                +  +    D+ +      D E + L     + +   L    +PL           
Sbjct: 118 TLLRDHQADQLASDVLS------DGEHRELT-IRPIATGRTLHLHYVPLREGGGKPVGAL 170

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T     +         +   +  +   V +VS+ELR+PL ++    + ++++    +  
Sbjct: 171 ITIRDLTQ---------ISMLERARRDLVANVSHELRTPLASLKLLVETVQSAPPPDI-- 219

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             S+ +E ++     +  LV+++ +L+ +++G + L    + +  ++    + I  +   
Sbjct: 220 -ASRMLEQMAQEIDAVTQLVDELHELSRLESGRVSLKLEPLPVWPVIERAVERIRPQADR 278

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGD-- 718
               I V     L   + D  R+ Q+   +L NA+ F+ +G T+ + A     RD+    
Sbjct: 279 KQQVICVEPAADLPLALMDGDRIGQVLLNLLHNAVKFTPEGGTITVAAEVLTLRDDEQPS 338

Query: 719 ------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
                        +  V + G  IP    + +F RF        R   G GLGL+I +  
Sbjct: 339 RPDRPPHPAGTWLLIRVSDTGIGIPNRDIQRIFERFYKVDRARTRHAGGTGLGLAIAKHL 398

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           +  HGG +  SS +   +T    +P+
Sbjct: 399 VEGHGGRIWASSQEGHGSTFWFTLPA 424


>gi|262405026|ref|ZP_06081578.1| sensor histidine kinase [Vibrio sp. RC586]
 gi|262348865|gb|EEY98006.1| sensor histidine kinase [Vibrio sp. RC586]
          Length = 1146

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 169/421 (40%), Gaps = 35/421 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQ 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLEL 520
             +  L++     +  G  I ++    ++      G          +  E+  S   +   
Sbjct: 656  RYLELFEFPTGLIQVGRPIADVIRHNAQQGLCGPGDPEEHVRRRVYHLEQGTSHTSSRVR 715

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA--------------- 565
                V+E    P+P    +++F ++T    AE++L   NE L +                
Sbjct: 716  PDGRVIEVQGNPMPGGGFVMSFTDITVFREAEQSLKIANETLEERVLQRTLELEKLNKQL 775

Query: 566  ----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                       + K+ F+  VS++L  PL     F   L      +   K + ++E    
Sbjct: 776  VTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSEVAKEAEVQKLAHHIESALG 835

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            ++    +L++D+LD++ +++G + L+  +  + D+L  +    +    +  ++  ++   
Sbjct: 836  AAE---DLISDLLDISRLESGKIDLHPHSFAIMDVLANLNAEFSALAAKQGVQFSMV--P 890

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  +D + L ++    L+NA  ++  G  ++       G     V +NG  I +D  
Sbjct: 891  SSLWVHSDPKLLRRVIQNFLTNAFRYNPNGKVILGVRRVAIGQVRIDVWDNGIGIEQDKQ 950

Query: 736  KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI----PSK 791
            + +F  F         +G+GLGL+I +   ++ G  +S+ S     +  +  +    PS+
Sbjct: 951  QEIFEEFNRGGQVRSDQGLGLGLAISKGIAHVLGHQISMRSWPRQGSVFSLTLERAEPSQ 1010

Query: 792  E 792
            +
Sbjct: 1011 Q 1011



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 53/145 (36%), Gaps = 2/145 (1%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   + D      +  + ++   IA+ D+   L   N+ ++EL+E     +       
Sbjct: 616 VDEASELYDFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNQRYLELFEFPTGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++               +  +  ++   +   +H  +   P+G+ + V     P GG +
Sbjct: 676 DVIRHNAQQGLCGPGDPEEHVRRRVY-HLEQGTSHTSSRVRPDGRVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGE 438
             F ++TV  + E       +   E
Sbjct: 735 MSFTDITVFREAEQSLKIANETLEE 759


>gi|262161796|ref|ZP_06030814.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae INDRE 91/1]
 gi|262028528|gb|EEY47183.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae INDRE 91/1]
          Length = 1176

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 522 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYYTC-----CEKGCVQPQPECS-F 575

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 576 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 633

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 634 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 690

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 691 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 750

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 751 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 809

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 810 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 869

Query: 788 IPS 790
           +P 
Sbjct: 870 LPL 872



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 501 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 556


>gi|229109466|ref|ZP_04239058.1| hypothetical protein bcere0018_17320 [Bacillus cereus Rock1-15]
 gi|228673963|gb|EEL29215.1| hypothetical protein bcere0018_17320 [Bacillus cereus Rock1-15]
          Length = 443

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 205 ELGELAHSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 263

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  
Sbjct: 264 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKE 323

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+     D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ 
Sbjct: 324 IQFITTIDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDE 381

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  
Sbjct: 382 GIGIAKEHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILI 439

Query: 787 RIPS 790
           ++P 
Sbjct: 440 KLPL 443


>gi|254416706|ref|ZP_05030456.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176446|gb|EDX71460.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 785

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 86/512 (16%), Positives = 180/512 (35%), Gaps = 22/512 (4%)

Query: 292 AIDVSKEITVNDQLTHTYE---ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           AID  ++      L    +   I       I + + +  +   N++ ++   +    +  
Sbjct: 283 AIDAQRQQFQQALLASEQKFHAIFDQTFQFIGLLEPDGTVLEANQTALDFGGLRHDQVIG 342

Query: 349 NP-SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
            P                 +    ++ +          +   D     +     V  +S 
Sbjct: 343 KPFWQARWWTISAQTQAQLKDAIARSAQGEFIRYEVDVQGAGDRIATIDFSLKSVTDSSG 402

Query: 408 PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                I    ++T    +E +     +      D  + G A+  PDG+    N A   L 
Sbjct: 403 QVVLLIPEGRDITEVKQIEEQLRESEERFRRAFDDAATGEALVTPDGQFIRVNRALCDLL 462

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +E+ L   T  ++I        +      L    I +++ E++       ++    + 
Sbjct: 463 GYQESELL-ATTFQDITYPDDLETDLGYVRQLLTDEIQAYEMEKRYFHKQGHVI---WIL 518

Query: 528 YSIIPLPNAQ-----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            S+  + N+Q      +    ++T + + +  +      L +++     F   VS++L S
Sbjct: 519 LSVSLVRNSQRQPLYFVGQIQDITHTKQTQIQMKNLVTELERSNRELEDFAYIVSHDLLS 578

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  +   +DLL       L+ +  +Y+  +      +   +ND+L L+ V        +
Sbjct: 579 PLHKMQMLSDLLTEDYSQVLDEQGQEYLRRMRQVKERMQTFINDLLMLSRVTTQAQP--F 636

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + LN ++ EV   +  ++ E    ++V    KL +  AD  ++ Q+   +LSNA+ F 
Sbjct: 637 IPVNLNTVVQEVLSDLDVQLQETGGTVEV---EKLPTVKADPLQMRQLMQNLLSNALKFH 693

Query: 703 SKGSTVILKAARDNGDF----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
                 ++K               +K+ G     +  + +F  F     R    G GLGL
Sbjct: 694 QSKIAPVVKVYSQPSQLPDQCEIVIKDQGIGFKSEYEEQIFEAFQRLHSRRHYEGTGLGL 753

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I       HGG ++ SS           +P+
Sbjct: 754 TICRKIATRHGGTITASSVPGEGARFTITLPT 785



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 107/318 (33%), Gaps = 34/318 (10%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           + G+  +     L+ I    A+     + L      F  +FD     +   +  G +L A
Sbjct: 269 IFGALIWCNARRLNAID---AQRQQFQQALLASEQKFHAIFDQTFQFIGLLEPDGTVLEA 325

Query: 219 NISYKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGN 273
           N +        + +  G  F +A   +     +   K  I+ SA  +     V     G+
Sbjct: 326 NQTALDFGGLRHDQVIGKPFWQARWWTISAQTQAQLKDAIARSAQGEFIRYEVDVQGAGD 385

Query: 274 NKS---YKIVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYE----ILHNLTVAIAIF 322
             +   + +  V +S G+  + I    D+++   + +QL  + E       +     A+ 
Sbjct: 386 RIATIDFSLKSVTDSSGQVVLLIPEGRDITEVKQIEEQLRESEERFRRAFDDAATGEALV 445

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
             +      NR+  +L     + L          +     +    + +    ++ +    
Sbjct: 446 TPDGQFIRVNRALCDLLGYQESELLA----TTFQDITYPDDL---ETDLGYVRQLLTDEI 498

Query: 383 KSSETHKDTWHLPNGQTLHVIVT----SNPRGGTIWM---FENLTVQVDLETKYNTLVKV 435
           ++ E  K  +H   G  + ++++     N +   ++     +++T     + +   LV  
Sbjct: 499 QAYEMEKRYFH-KQGHVIWILLSVSLVRNSQRQPLYFVGQIQDITHTKQTQIQMKNLVTE 557

Query: 436 QGETIDHLSEGVAVFGPD 453
              +   L +   +   D
Sbjct: 558 LERSNRELEDFAYIVSHD 575


>gi|172036100|ref|YP_001802601.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697554|gb|ACB50535.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 850

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 6/257 (2%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +     + +  +         E   +A+ IK+ F+  +S+ELRSPL  I+G++ LL+
Sbjct: 452 ADLIEQRQAIAERQQLLEREQAAREDAEQANRIKDEFLAILSHELRSPLNPILGWSTLLQ 511

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T +   + +K  + +  I  ++ +   L++D+LD+A +  G +KL  +T+ L  ++    
Sbjct: 512 TKQFDPITTK--KGLSTIERNAKLQTQLIDDLLDIARILRGKLKLEETTVNLVTVVEGAM 569

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + + T     +I ++      +     D  RL Q+   +LSNA+ F+ +G  V ++   +
Sbjct: 570 EVVRTTAEAKSIALQFEV-ITVCQVRGDEGRLEQVVWNLLSNAIKFTPEGGQVGVRLEVN 628

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
                 +VK+ G  I  D    +F  F         Q  G+GLGL+IV+  ++ H G ++
Sbjct: 629 GEQACLTVKDTGKGISSDFLPYLFQSFRQEDVSVTRQYGGLGLGLAIVKYIVDAHNGSIT 688

Query: 774 ISSS-DEGVTTINCRIP 789
             SS +    T   + P
Sbjct: 689 ADSSGEGQGATFTVQFP 705


>gi|255655503|ref|ZP_05400912.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-23m63]
          Length = 912

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 112/636 (17%), Positives = 245/636 (38%), Gaps = 61/636 (9%)

Query: 193 SVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKR 251
            + +   D++   VW   D   +I + N  +K     +   + K +   ++   E++ ++
Sbjct: 275 ELLRQALDTIPN-VWIVTDYDFNISYTNNKFKDEFSKDMDNYYKILTFIKE--DEKVAEK 331

Query: 252 MISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE- 310
           +           + V    +G      +    +         D++ EI +++++ H  + 
Sbjct: 332 LKKFDNDISIIDKLVEL--NGKIYLLSLSNNKDESNYLISLNDITNEIKIDEEIRHINKD 389

Query: 311 ---ILHNLTVAIAIFDQNR-----YLQFHNRSFVELWEIDLAFLATNP------------ 350
              I+ N+   I +           +   N+ + + ++   + L                
Sbjct: 390 YENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCTSSDLVDMTLEQYFETFNIDF 449

Query: 351 -SNDELLEFLRSANKLPEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
             N E      +  K  E +++  T    +  V   SE  +    +  G        S+ 
Sbjct: 450 FDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVEEVRVGDYW-----SDN 504

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLW 467
           +   +  F ++T ++++    N    +  + +D + E + +      R+  +N AFR L+
Sbjct: 505 KLFKLLTFRDITKEINILRTVNEQKIICEKLLDVIPEAIFLEDLSTSRVLYTNRAFRELF 564

Query: 468 KTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAI----ITSFDDERKSLQGTLELLS 522
               + L   T   RNI     +Y N  +  +   +I      +   E K +  TL    
Sbjct: 565 GISSDVLGVTTQKYRNIL--VKKYINNLNIGEREKSIHIVNENNHIKEVKMISRTLYFGQ 622

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                  I  L             +S R ++AL ++     + D++K  F  ++S+EL++
Sbjct: 623 KRSRVRIIKDLS---------VQRESERLKKALIKQR----QYDQMKMEFYANISHELKT 669

Query: 583 PLTNIIGFTDLLKT----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           PL NI     L++      K+        ++++    +   LL L+++I++++ V + I 
Sbjct: 670 PLNNIYSSVQLVENLYKKGKIIDFQDILKEHIKITKQNMFRLLRLIDNIINISQVKSDIY 729

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           K+      + D+   +  SI++      I +   +D +      D + + +I   ILSN+
Sbjct: 730 KIKAVNFDIIDITERIVTSISSYAKSKGIDLIFDTDEETVMVGLDPESIERIILNILSNS 789

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
           + F+ +G  +++   + +      +K+ G  I ++    +FNRF    + G     G G+
Sbjct: 790 IKFTLEGGEILVGIYKKDETVEIIIKDTGVGIEKEKLNDIFNRFKQIENSGISNEFGSGI 849

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GL + +S I +  G + I S     T +    P KE
Sbjct: 850 GLCLTKSLIEIQNGKIYIDSKVGEGTNVKIIFPIKE 885



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 103/296 (34%), Gaps = 35/296 (11%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           ++ +     + L  +     + D +  + + N  F + +  D+       +  ++L F++
Sbjct: 270 IDQRKELLRQALDTIPNVWIVTDYDFNISYTNNKFKDEFSKDMD------NYYKILTFIK 323

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM-FENL 419
              K+ E+L            + +  +  D     NG+   + +++N       +   ++
Sbjct: 324 EDEKVAEKLK----------KFDNDISIIDKLVELNGKIYLLSLSNNKDESNYLISLNDI 373

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG-----RIKLSNPAFRSLWKTE---- 470
           T ++ ++ +   + K     I ++   + V   +G     ++   N  +   +K      
Sbjct: 374 TNEIKIDEEIRHINKDYENIILNIPSPILVRSAEGGIKKNKVISINKKYEKSFKCTSSDL 433

Query: 471 -ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VL 526
            +  L       NI    +R +   +      A I S++D    +   +   S+    V 
Sbjct: 434 VDMTLEQYFETFNIDFFDNREFKRLNLTQEKKAEIVSYNDTANCIVNFVMSDSEGEEHVE 493

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS-----FVQHVS 577
           E  +    +   +   +   D  +    L   NE     +++ +      F++ +S
Sbjct: 494 EVRVGDYWSDNKLFKLLTFRDITKEINILRTVNEQKIICEKLLDVIPEAIFLEDLS 549


>gi|149276757|ref|ZP_01882900.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232426|gb|EDM37802.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 512

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 90/515 (17%), Positives = 188/515 (36%), Gaps = 55/515 (10%)

Query: 308 TYEILHNLTVAIAIFD---QNRYLQFHNRSFVELWEIDLA--------FLATNPSNDELL 356
             ++L      + I D    +  + + N +F +L              FL ++  + +  
Sbjct: 15  LVKVLEAANTGVVITDNLLPDNPIIYCNPAFEQLSGYSRDEIIGRNCRFLQSSDRSQQAR 74

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
             +R+A    E    +        V   +E +       +G+  + I   N     +   
Sbjct: 75  FDIRAAIDAGENCVVQVRNYTKTGVLFHNELYLSAVKNESGEVTNFIGIQNDVSARVKAE 134

Query: 417 ENL------TVQ--VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           ++L      T Q  +D         +     ++ + E + V   + ++   N  F S +K
Sbjct: 135 QDLEQNYRETEQTVIDRTNMLRESEEYLSSIVETIRESLIVMDKEYKVLSVNNHFLSTFK 194

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                         I  T  R   E                E K +   +   ++ VL+Y
Sbjct: 195 VS------------INETKGRLLYELGNGQWNI-------PELKKMMEDILPTNNPVLDY 235

Query: 529 SI----------IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +          + L NA  +       D +        +   +   ++ K+ F+   S+
Sbjct: 236 EVEHEFPHIGRKLMLLNAHRVELEGKFKDRILLAIEDITERRNI---EQRKDDFLSIASH 292

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           EL++PLT ++G+  +++       + K    V         L  L+ ++LD++ + +G +
Sbjct: 293 ELKTPLTTVVGYVQMMQRLMPEQASDKFRSVVGKTEMYVERLNQLLTELLDVSRIQSGNI 352

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +L+      + ++ E  + I T   +  I +K  +  +   +  D   L Q+ + ++SN 
Sbjct: 353 ELHKDLFDFDKMVAEAVEGIQTATPKYQISLKGKAGTQ---YFGDESHLTQVLTNLISNG 409

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLG 757
           + ++     V +  +R +     SVK+ G  I ED  K +F RF    A +    G+G+G
Sbjct: 410 IKYAPDADEVEVYVSRVSNFIKVSVKDFGMGIKEDERKKIFERFYRVGAIQKNFPGMGIG 469

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L I +  I  H G   + S     +  +  +P  +
Sbjct: 470 LYICDQIIKNHNGSFWVESELGKGSVFSFTLPVDQ 504


>gi|54298027|ref|YP_124396.1| sensor histidine kinase [Legionella pneumophila str. Paris]
 gi|53751812|emb|CAH13236.1| sensor histidine kinase [Legionella pneumophila str. Paris]
          Length = 816

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 6/256 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  +    +   A + L E N+ L + D+IK  F  +VS+ELR+PL  I+G  ++L   K
Sbjct: 165 IEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEK 224

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S     +  I  ++ ILL  VND+L+++ +DAG M L+Y+ I L  L+ +     
Sbjct: 225 R--LPSFVLNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQTIALF 282

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++ E      +    +L + + D  ++  +   ILSNA+ F+ + + V ++ A+ N +
Sbjct: 283 EAQIPERKFVFSMDLPDELQAQM-DPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPE 341

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                +++NGS IP D+C+++F RF            G GLGLSI + F+ LHGG +   
Sbjct: 342 TCRLQIEDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAG 401

Query: 776 SSDEGVTTINCRIPSK 791
           ++  G       +P K
Sbjct: 402 NARNGGAIFTIELPLK 417



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 108/278 (38%), Gaps = 23/278 (8%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T  +L +   +Y I P    +      N+    +AE  L              + FV H 
Sbjct: 555 TARMLEEGAQDYVIKPFSAKEFKARVANLILVKKAEDEL--------------DQFVYHA 600

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S++L++PL  +      ++      L+ +  +Y+  +   ++ +  L++ +L  A   +G
Sbjct: 601 SHDLKAPLPAMEHLISWIEEDLGEMLSEQSKKYLLLLRQRASRMSKLLDGLLKYA--QSG 658

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +     TI  + L+ ++ + +          +    +  L         L ++F+ +L 
Sbjct: 659 YVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPILNTCELPLREVFTALLD 713

Query: 697 NAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           N++     K   +I+     +  + F V ++G  I +     +F  F +   R +    G
Sbjct: 714 NSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKKYQDRIFQLFQTLQPRDKLETSG 773

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS-KE 792
           +GLSI +  +   GG +S+ S     +      P  KE
Sbjct: 774 VGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDKE 811


>gi|225405520|ref|ZP_03760709.1| hypothetical protein CLOSTASPAR_04740 [Clostridium asparagiforme
           DSM 15981]
 gi|225042932|gb|EEG53178.1| hypothetical protein CLOSTASPAR_04740 [Clostridium asparagiforme
           DSM 15981]
          Length = 722

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 161/407 (39%), Gaps = 31/407 (7%)

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           V+VT+   G  ++     +++   +     L+ +     ++          D  I + N 
Sbjct: 305 VVVTALAAGSFLYW----SMRRKQQENDRFLLDIYQAISEN---------TDTVIFILNA 351

Query: 462 AFRSLWKTEENRLSP-GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---RKSLQGT 517
              +     EN     G           +  + +    L A +   +  E   R+     
Sbjct: 352 RSAAPDYVFENSGRILGIPAEEFLKQEQQEQDSAFRSKLQAILEEPWPSEGCTREVHTYN 411

Query: 518 LELLSDSVLEYSIIPL---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             L  D  L+  I P       + +    +VT        +        +A+  K++F  
Sbjct: 412 ERLHRDMWLKILICPFLLGDEKKCLYAVTDVTQEHNDREKIAAAVVVAEQANAAKSNFFS 471

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+++R+P+  I+G T + K S       +    +  I  SS  LL L+ND+LD++ ++
Sbjct: 472 SMSHDMRTPMNGIVGMTTIAKRSLGDQ--DRVLDCLNKIDFSSRHLLGLINDVLDMSKIE 529

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +G + L      L +LL  ++  +  +       +    + +    + D  RL QIF  +
Sbjct: 530 SGKLALVCEPFDLGELLLGLEAILRPQCESKGQTLTFTVNIRHLRLMGDTLRLNQIFMNL 589

Query: 695 LSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR- 748
           LSNA+ F+ +G  V   A           F F+V +NG  I ++  + +F  F   ++  
Sbjct: 590 LSNAVKFTQEGGAVSFTAQELEQRGNSPTFRFTVADNGIGIAQEAQQIIFTPFERVSNTA 649

Query: 749 -GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC--RIPSKE 792
             Q  G GLGL+I ++ I   GG +++ S+    +       +P +E
Sbjct: 650 VHQIEGTGLGLAITKNLITAMGGQITLKSAPGQGSAFTVDLDLPMQE 696


>gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 509

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 159/396 (40%), Gaps = 42/396 (10%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
               L  + +   +     +  +++ +      GRI   +     L   E   L  G  +
Sbjct: 125 ENARLSQQLDEERRKMEAVLQGMADLLVAVDLQGRIITWSRQAARLLAAEGESLL-GKTL 183

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIPLPNAQTM 539
             +         E  G +L A  +    + R  +   L++ S +V +  S  PL NA   
Sbjct: 184 EEVLKA------EVAGGELPARTVLRTAEPRLDVGYLLKIGSQAVPVLSSAAPLWNANGE 237

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           L              +      L++ ++ K  FV  +S++L+SP+T ++G  DL++ SKL
Sbjct: 238 LAGSV---------EIIRDISKLKELEQEKEDFVSMLSHDLKSPITAVVGSIDLVRESKL 288

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G +   QS+Y+     S   ++ +++ +L +   +AG MKLN+       L+N       
Sbjct: 289 GPVTPDQSEYLNAAIESCEEMVEMIDTLLGIHKFEAGKMKLNFREEDPVLLINRSAAKFQ 348

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------ 713
           T      IR+       L +  ADR    +I   +LSNA+ F+ +G  + + A       
Sbjct: 349 TPAQRGAIRLFTTLPASLPAISADRSLFSRILGNLLSNAVKFTPEGGEIEVSADLVQDPA 408

Query: 714 -----------------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGV 754
                             +       V+++G  IP++   S+F+RFV   +R Q   RG 
Sbjct: 409 PVLAHVPQECYPGQELPSEGEFVRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGT 468

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLGL+     ++ HGG++   S     +      P+
Sbjct: 469 GLGLAFCRKAMDAHGGYIWAKSEPGEGSVFTVLFPA 504


>gi|86137265|ref|ZP_01055843.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. MED193]
 gi|85826589|gb|EAQ46786.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. MED193]
          Length = 736

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 129/247 (52%), Gaps = 12/247 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   ++   KA+  K+ F+  +S+E+R+P+  ++G  ++L+ +    L  +Q + +  I 
Sbjct: 202 LLRAHQKESKANRAKSEFLAAMSHEIRTPMNGVLGMVEVLEKT---DLAPEQRRILHTIQ 258

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            SS  LL +++DILD++ ++AG M+L  + + L  L+     ++    ++  +++ +   
Sbjct: 259 ESSNSLLWIIDDILDVSRIEAGKMELFETPMRLLPLIEGATATLRPHANQMGVQLSLSVQ 318

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFS-----SKGSTVILKAA-RDNGDFIFSVKNNG 727
             L  +F  D  R+ QI   ++ NA+ FS      +   V L+   R+ G   F +++NG
Sbjct: 319 ADLPDTFRGDAGRMRQILLNLMGNAIKFSEPLPGEEPGQVKLRVEIREAGWIDFVIEDNG 378

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  ++ +++F  F  +A   +R  +G GLGL+IV+  ++  GG V + S+    +   
Sbjct: 379 IGIEPEVQETIFTPFERSASVAKRMIKGNGLGLTIVQQLVSKMGGAVKVDSTLGEGSVFT 438

Query: 786 CRIPSKE 792
            R+P  E
Sbjct: 439 VRLPLVE 445


>gi|146297007|ref|YP_001180778.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410583|gb|ABP67587.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 467

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 120/247 (48%), Gaps = 4/247 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +  +      +     E L   + ++ SF+ +VS+ELRSPLT+I GF + +    +   
Sbjct: 221 NSNDEIGELIASFNYMTEKLENLEMMRKSFISNVSHELRSPLTSIRGFIEGILDRTIP-- 278

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           + K+  Y+  +      L NL+N +L+L+ ++ G + LN ST  +  ++ E       ++
Sbjct: 279 DEKRDFYLNLVREEVIKLNNLINQLLELSRLEWGKINLNLSTFKIYSVIAEELIKFEKRI 338

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
            E  I + +  +  L    ADR  + ++   +L NA+ ++  G  + + +  +NG    +
Sbjct: 339 EEKKIEVFLEVNENL-MVKADRDLISRVVHNLLDNAIKYNKVGGKIYIYSEVENGKAYIT 397

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++ G  IPE + K ++ RF          +GVGLGLSIV+  I LH  ++ + S +   
Sbjct: 398 IQDTGIGIPEKLQKLIWERFYKVDESRSLEKGVGLGLSIVKEIIKLHKQNIWVESEEGVG 457

Query: 782 TTINCRI 788
           T     +
Sbjct: 458 TKFTFTL 464


>gi|309388596|gb|ADO76476.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 166/369 (44%), Gaps = 28/369 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                        +  ++EG+      G I L+N A   ++  + +    G  I  +   
Sbjct: 247 ESLAEEKNKLKYVLSGMAEGIIAVNHLGEIILTNKAAAEIFDFKAD--LQGEKITEVN-- 302

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL-EYSIIPLPNAQTMLTFVNV 545
                 +S+  + F  II S     K L  + E   +  L   + I L + Q        
Sbjct: 303 -----LDSEVKENFKQIIASESFASKQLVISREKTKEYYLVHLTEIKLQDDQFWGGVAIF 357

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D     R            ++++  FV +VS+EL+SPLT+I G  ++L    + +  ++
Sbjct: 358 HDISERYR-----------FEKLQREFVANVSHELKSPLTSIKGSAEILLDGIIEN-EAQ 405

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA-TKMHE 664
           Q +Y++ I   S  L +L+++ L LA +D+G ++LN   I +  L  +++      K  E
Sbjct: 406 QKEYLKMILKESNSLAHLIDETLTLAEIDSGGVELNKEKIKVKTLFQDLEIFFDNIKKEE 465

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            ++  +  +D +L    A+R+++ Q+   +L+N++ +S+K   + LKA +       SV 
Sbjct: 466 QSLEFEFEADLEL---YANREKIRQVLINLLTNSVKYSAKKGKIKLKALQMAEKIKISVS 522

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IP+   K+++ RF           R  GLGL+IV+  I  H G +++ S     +
Sbjct: 523 DNGIGIPKAEQKNIWERFYKIDKARTPGERSSGLGLAIVKQIIQEHQGKLALKSQVGEGS 582

Query: 783 TINCRIPSK 791
           T +  +P+K
Sbjct: 583 TFSFILPNK 591


>gi|217978617|ref|YP_002362764.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
 gi|217503993|gb|ACK51402.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
          Length = 1792

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 16/262 (6%)

Query: 545  VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
                 +A RAL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +   +L+ 
Sbjct: 1102 NQQIEQARRALEEKAGELALTSKYKSEFLANMSHELRTPLNSILILGQQLSDNVEHNLSD 1161

Query: 605  KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            +Q +    I A+ + LLNL++DILDL+ +++G + ++   I    LL  + +    +   
Sbjct: 1162 RQVECARTIHAAGSDLLNLISDILDLSKIESGTVSIDAEEISFAHLLQMIARPFRHEAES 1221

Query: 665  NNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-------------L 710
              +   V + +G  G  V D +RL QI   +LSNA  F++ G   +             L
Sbjct: 1222 RGLSFDVEATEGLSGHIVTDVKRLQQILKNLLSNAFKFTAAGGVSLKVAPAASGWSADNL 1281

Query: 711  KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
              AR  G   F V + G  I  +  K +F  F         +  G GLGL+I      L 
Sbjct: 1282 SLARAKGVVAFKVADTGIGISAEKQKIIFEAFQQADAGTSRKYGGTGLGLAISRDLAQLL 1341

Query: 769  GGHVSISSSDEGVTTINCRIPS 790
            GG + + S     +     +P 
Sbjct: 1342 GGEIQLRSVPGEGSVFTLYLPL 1363


>gi|163848410|ref|YP_001636454.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|163669699|gb|ABY36065.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
          Length = 403

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 142/386 (36%), Gaps = 47/386 (12%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           L      L       ID    GV V   + RI   N     L  T+      G     + 
Sbjct: 44  LAIHRQPLFLALAAAIDT---GVIVINTERRIVFHNDTALHLLATQSPMQDSG-----LI 95

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                +  +    D+ +      D E + L     + +   L    +PL           
Sbjct: 96  TLLRDHQADQLASDVLS------DGEHRELT-IRPIATGRTLHLHYVPLREGGGKPVGAL 148

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T     +         +   +  +   V +VS+ELR+PL ++    + ++++    +  
Sbjct: 149 ITIRDLTQ---------ISMLERARRDLVANVSHELRTPLASLKLLVETVQSAPPPDI-- 197

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
             S+ +E ++     +  LV+++ +L+ +++G + L    + +  ++    + I  +   
Sbjct: 198 -ASRMLEQMAQEIDAVTQLVDELHELSRLESGRVSLKLEPLPVWPVIERAVERIRPQADR 256

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGD-- 718
               I V     L   + D  R+ Q+   +L NA+ F+ +G T+ + A     RD+    
Sbjct: 257 KQQVICVEPAADLPLALMDGDRIGQVLLNLLHNAVKFTPEGGTITVAAEVLTLRDDEQPS 316

Query: 719 ------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
                        +  V + G  IP    + +F RF        R   G GLGL+I +  
Sbjct: 317 RPDRPPHPAGTWLLIRVSDTGIGIPNRDIQRIFERFYKVDRARTRHAGGTGLGLAIAKHL 376

Query: 765 INLHGGHVSISSSDEGVTTINCRIPS 790
           +  HGG +  SS +   +T    +P+
Sbjct: 377 VEGHGGRIWASSQEGHGSTFWFTLPA 402


>gi|241203748|ref|YP_002974844.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857638|gb|ACS55305.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 503

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 138/307 (44%), Gaps = 16/307 (5%)

Query: 489 RYYNESDGWDLFAAIITSFDDERK----SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           R   ++   DL     +   D+R+     +  T    +D  L   I  L +         
Sbjct: 157 RRGEDAQSVDLRLDRPSVSRDQRQFAYLRMDMTARRDADGELAAIIAQLRDVSV------ 210

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LN 603
                +       +      A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N
Sbjct: 211 ---EQQLRDEAQNRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFEN 267

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A +  
Sbjct: 268 DRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISSSVKSCESMLALQAK 327

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    +V
Sbjct: 328 TKGLTLTSRIQRDLGEVVADQRAIQQILINLVGNAIKFTEAGGVVSVDAAARDGILKLTV 387

Query: 724 KNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  IP D    +   FV   N +  +  G GLGLS+V+  + LHGG+ +I+S     
Sbjct: 388 SDTGIGIPADKLALLGQPFVQIQNDYTRRFEGSGLGLSLVKGLVALHGGYFAIASQPGEG 447

Query: 782 TTINCRI 788
           T I   I
Sbjct: 448 TIITIEI 454


>gi|238786285|ref|ZP_04630227.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
 gi|238712808|gb|EEQ04878.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
          Length = 911

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L   N+  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 268 ELGLANKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 324

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 325 QRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRSTLDEVIILLAHTAHEKGLELTLHI 384

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    V D  RL QI + +L NA+ F+ +G+  IL  A+         +  +++ G 
Sbjct: 385 NNDVPEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVTAQVLTAQRVTLVVEIQDTGI 444

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S  +  +T   
Sbjct: 445 GISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGSTFKF 504

Query: 787 RI 788
            +
Sbjct: 505 HL 506


>gi|330899200|gb|EGH30619.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 619

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 119/253 (47%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+ +     +Q
Sbjct: 219 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHM---THEQ 275

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 276 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQRT 335

Query: 667 IRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           + +++     L +   + D  R+ QI   ++ NA+ F+ +G  V + A     D+    F
Sbjct: 336 LLLELHIQPGLETLNVIGDPTRIRQILVNLIGNALKFTEQG-KVCVDARWAMLDDELLHF 394

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V+++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S 
Sbjct: 395 TCAVQDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESE 454

Query: 778 DEGVTTINCRIPS 790
           +   +    +IP 
Sbjct: 455 EGSGSLFTLQIPL 467


>gi|298247031|ref|ZP_06970836.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297549690|gb|EFH83556.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 484

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 117/248 (47%), Gaps = 9/248 (3%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-----TSKLGSLNS 604
           +AE  +  +     +A+  +   + +VS+ELR+P+ +I    ++L         L     
Sbjct: 229 QAEEQVRREQAKAERAELSRQQLIVNVSHELRTPVASIRAHLEVLLKACAHDDGLVLQPQ 288

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH- 663
           + S Y+      +  L +LV D+L L+  +A  ++LN +++   +++ EV Q++      
Sbjct: 289 ELSNYLGIAHRETVRLSSLVEDLLSLSRTEADKLRLNMASVPPGEVIEEVYQALLPLARK 348

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFS 722
           E  I +      +L    AD QRL Q+   ++ NA+ ++  G  + +   +++ D  + S
Sbjct: 349 ERMITLVHSLPERLPRVQADHQRLTQVLMNLVRNAITYTPNGGIISISTRQEHSDYLVIS 408

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  IP D    +F RF        R   G GLGLSIV+  ++  GG +++ S +  
Sbjct: 409 VADTGMGIPADQLAQIFERFYRTDASRSRSSGGFGLGLSIVKDLVDAMGGKITVESQEGE 468

Query: 781 VTTINCRI 788
            +  +  +
Sbjct: 469 GSCFHIHL 476


>gi|220924683|ref|YP_002499985.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949290|gb|ACL59682.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 513

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 4/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSK 605
           +  +A+    E      +A+  K+ F+  +S+ELR+PL  I+GF++++K    G   +  
Sbjct: 240 ELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPS 299

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y   I  S   LLNL+N+ILDL+ ++AG  +LN   + L  ++ E +  +A +    
Sbjct: 300 YQEYSTDIHDSGMHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMALRARAK 359

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVK 724
           N   + + D  L    AD + + Q+   ILSNA+ F+  G  + +K     +G    S+K
Sbjct: 360 NQVFRELVDPSLPRLWADERAVRQVVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIK 419

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IPED   +V + F   +   +   +G GLGL IV+  ++LHGG   + S     T
Sbjct: 420 DTGPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFRLKSKPREGT 479

Query: 783 TINCRIPS 790
            +    P+
Sbjct: 480 EVIVTFPA 487


>gi|77464081|ref|YP_353585.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77388499|gb|ABA79684.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 945

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 126/800 (15%), Positives = 250/800 (31%), Gaps = 91/800 (11%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
           + A ++  +      + ++ S+  + L     + I  D  +           R+      
Sbjct: 4   AWAARLGASRDQQRALEEERSRTQAALQVMPHMLIELDADERLLRGHPGWLDRLPTLGPM 63

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL--- 166
                 +++L      ++ +   ++   G               ++  R +G+  +L   
Sbjct: 64  APGQGLQDFLPVDLATEVRRVLAEVETTGAPVS--------RDWQV--RQAGARVWLAIS 113

Query: 167 --RILSLDGIYSELAET----TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
             R+  L              T +                    LV   D    I W N 
Sbjct: 114 AARLPPLAPDRRPGHAVMICDTTELHAQRKQADRLGKFAQLTTNLVIVTDPHQRIEWVNA 173

Query: 221 SYKKNTETEGIVFQK----AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-GNNK 275
           ++++ T   G   +     A+ +  +        R+ +  A  +     V      G   
Sbjct: 174 AFEQQTGHSGPSVRGQPLCAVLQG-EPAPGGCGDRLRAMLAEGRTARAEVEATAACGRRF 232

Query: 276 SYKIV------RVLNSFGEAGIAIDVSKEITVNDQLTHTYEI-----------LHNLTVA 318
              +             G   +A D++      +QL                 +  L   
Sbjct: 233 WLDVSLQPLLDDEGALDGYMAVASDITAHKRQEEQLAAMAAEARATRARLAAAVDVLPDG 292

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKEN 377
            A FD    L   N  + + +    A +    S +++L     +  + E     + W   
Sbjct: 293 FAYFDAEDRLVVFNPQYRDCYPGAAAAIVPGASFEQILRQAVQSGDILEARGREEEWLAA 352

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
             + +      ++   L +G+ L VI    P GG + +  ++T     E +         
Sbjct: 353 RLAAHHRGSNQQEQ-QLADGRWLRVIERQTPDGGRVGLRVDVTALKLAEQRTRI---DFS 408

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-AATCSRYYNESDG 496
            T+D   +G+A   P+GR    NPA R ++         G   R + +   + +   +  
Sbjct: 409 ATMDASQDGIAFTDPEGRYIYMNPAHREMFGIATEDEILGRSWRELYSGDVADHIATTAL 468

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
             L      S    R  L G     SD   E S+    +   +    +++  +R ++   
Sbjct: 469 PALL-----STGGWRGELIGRRRDGSDLPQEVSLTLKADGGIICISRDISKRLREQQERM 523

Query: 557 EKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
              E L+  +  E+       ++++L + L  I G   L++  + G+      + +    
Sbjct: 524 RLREELQMAQRREVIGQLASGLAHDLNNLLAAIGGSALLIQEMQSGAAEVHAQRILAATE 583

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +      LV   L L     G  + N S I L  LL E    +   +     R+ +   
Sbjct: 584 QAG----ALVRRFLTL-----GKRQSNRSRIDLCPLLQEAADLVQAGLRNRT-RLTLALP 633

Query: 675 GKLGSFVADRQRLLQIFSKILSN---AMDFSSK---GSTVILKAA--------------- 713
                  AD   +LQ+   ++ N   A+  +     G  + +  A               
Sbjct: 634 DAPIWIEADPTDILQVVLNLVINARDAISTAPPREGGHEISVTLAPAGPAQLVQTYAVGA 693

Query: 714 --RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              D      +V ++G  I   M   VF  + S        G GLGL+IV   +  + G 
Sbjct: 694 PCADRRYVSMTVSDSGPGIEPAMQAKVFQPYFSTKGAA---GTGLGLAIVTGVLTANHGA 750

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S+    T      P K
Sbjct: 751 IALQSAPGEGTRFTVLWPVK 770


>gi|296107724|ref|YP_003619425.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy]
 gi|295649626|gb|ADG25473.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy]
          Length = 816

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 6/256 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  +    +   A + L E N+ L + D+IK  F  +VS+ELR+PL  I+G  ++L   K
Sbjct: 165 IEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEK 224

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S     +  I  ++ ILL  VND+L+++ +DAG M L+Y+ I L  L+ +     
Sbjct: 225 R--LPSFVLNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQTIALF 282

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++ E      +    +L + + D  ++  +   ILSNA+ F+ + + V ++ A+ N +
Sbjct: 283 EAQIPERKFVFSMDLPDELQAQM-DPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPE 341

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                +++NGS IP D+C+++F RF            G GLGLSI + F+ LHGG +   
Sbjct: 342 TCRLQIEDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAG 401

Query: 776 SSDEGVTTINCRIPSK 791
           ++  G       +P K
Sbjct: 402 NARNGGAIFTIELPLK 417



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 117/319 (36%), Gaps = 28/319 (8%)

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              H+  +    +   +          +    DDE      T  +L +   +Y I P   
Sbjct: 519 MMPHMSGVEMVHAIREHPQLLKTPIIILTAKADDEL-----TARMLEEGAQDYVIKPFSA 573

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            +      N+    +AE  L              + FV H S++L++PL  +      ++
Sbjct: 574 KEFKARVANLILVKKAEDEL--------------DQFVYHASHDLKAPLPAMEHLISWIE 619

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L+ +  +Y+  +   ++ +  L++ +L  A   +G +     TI  + L+ ++ 
Sbjct: 620 EDLGEMLSEQSKKYLLLLRQRASRMSKLLDGLLKYA--QSGYVFDKVRTIHTDRLITDII 677

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAAR 714
           + +          +    +  L         L ++F+ +L N++     K   +I+    
Sbjct: 678 KKLNP-----PQTVTFQLEDTLPVLNTCELPLREVFTALLDNSIRHHHRKDGHIIIGTKE 732

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +  + F V ++G  I +     +F  F +   R +    G+GLSI +  +   GG +S+
Sbjct: 733 KDRFYEFFVADDGPGIEKKYQDRIFQLFQTLQPRDKLETSGVGLSIAKKIVEFQGGKISV 792

Query: 775 SSSDEGVTTINCRIPS-KE 792
            S     +      P  KE
Sbjct: 793 ESEKNKGSVFRFLWPKDKE 811


>gi|317049304|ref|YP_004116952.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
 gi|316950921|gb|ADU70396.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
          Length = 908

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 14/244 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT  +LKT     L++ Q  Y+  
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTG----LSTNQRDYMST 333

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++ND+LD + ++AG + L      L   L+E    +A   HE  + + V 
Sbjct: 334 IERSAANLLSIINDVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHEKGLEMTVC 393

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
            + ++  + + D  RL QI   ++ NA+ F+ +G  + L+    N +         V + 
Sbjct: 394 LEKQVPDNVIGDPLRLQQILINLIGNAIKFTEQGH-IDLRVELRNTNATRVALEIQVHDT 452

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I +     +F  F        RR  G GLGL I +  ++  GG ++  S     +T 
Sbjct: 453 GIGISDQQQTQLFQAFRQADASISRRHGGTGLGLVITQKLVHEMGGEIAFHSRQGEGSTF 512

Query: 785 NCRI 788
              I
Sbjct: 513 WVHI 516


>gi|222148514|ref|YP_002549471.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735500|gb|ACM36463.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 511

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 4/237 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK-QSQYVEYISASS 617
                +A+  K+ F+  +S+ELR+PL  I+GF++++    LG LN+    +Y   I  S 
Sbjct: 252 RRRAEEANMAKSRFLASMSHELRTPLNAILGFSEVMAQEVLGPLNNPLYREYSGDIHRSG 311

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLNL+N+ILDL+ ++AG   L+  +I L ++  +    +  +    +I+I    +  L
Sbjct: 312 QHLLNLINEILDLSRIEAGKYDLSEESISLLEVAEDCVGMVQLRAKAKDIKISQQYEINL 371

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            +  AD + L Q+   +LSNA+ F+  G  +++K      G    S+K+NG  I E+   
Sbjct: 372 PALWADEKALRQVVLNLLSNAVKFTPPGGEILVKVGWTVGGGQYVSIKDNGPGIAEEEIP 431

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V + F   +   +   +G GLGL IV++ +  HGG   + S     T +   +P+K
Sbjct: 432 VVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHGGEFKLKSKLREGTEVIAILPAK 488


>gi|90580601|ref|ZP_01236406.1| putative sensor histidine kinase FexB [Vibrio angustum S14]
 gi|90438259|gb|EAS63445.1| putative sensor histidine kinase FexB [Photobacterium angustum S14]
          Length = 789

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 147/379 (38%), Gaps = 17/379 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  + + +        +    +D   + +       +    N A   L    E  L  
Sbjct: 138 NEVYQRENAQVAVAEQSALLKSFLDASPDLIYYRNEKNQFSGCNRAMSELVGKTEKELVG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         ++   ++D  +LF       D++          L     E   +P  N 
Sbjct: 198 LTPWDVYPEEVAKKIIKTD-EELFNEDSAMTDEQWLVYPNGKRAL----FELRKVPFYNR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 +        ER   +  +AL KA   K SF+  +S+ELR+PL  I+G + +L  
Sbjct: 253 NGRRLGLMGFGRDITER--KKYEDALEKASSDKTSFISTISHELRTPLNGIVGLSRMLLD 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L  +Q  Y+  +  S+  L N+ NDI+DL   D   ++L    +  N+ ++E+  
Sbjct: 311 T---DLTDEQRGYLRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFNEFIDEMGN 367

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KA 712
                  +  +R  +    +L  +   D  RL Q+   ++ NA  F+ +G  ++    + 
Sbjct: 368 ISQLMAEQKGLRFDLECLTELPKNIEVDSTRLRQVLWNLIGNATKFTKQGGVILSVSSEI 427

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHG 769
              + D IF V+++G  IP+    ++F  +             G G+GL++    + L G
Sbjct: 428 HEHDADIIFEVEDSGVGIPKSEIDNIFAMYYQVKQGDDNIHAVGTGIGLAVSRQLVQLMG 487

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +++ S     +T   +I
Sbjct: 488 GDITVHSEVGEGSTFTVKI 506



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +       ++   ++ K   D+   L+++R++       N +    +E  G  
Sbjct: 135 DLENEVYQRENAQVAVAEQSALLKSFLDASPDLIYYRNEKNQFSGCNRA---MSELVGKT 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
            ++ +G +   ++ EE+ K++I +     N    ++        +G    +++ +V    
Sbjct: 192 EKELVGLTPWDVYPEEVAKKIIKTDEELFNEDSAMTDEQWLVYPNGKRALFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     D L  
Sbjct: 252 RNGRRLGLMGFGRDITERKKYEDALEK 278


>gi|46201027|ref|ZP_00055920.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 796

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 158/389 (40%), Gaps = 21/389 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +   +++T +   E        +  E       G   +     +  S+P   +++    
Sbjct: 413 ILGTVQDITEKKQAEIAIREHQALLLEVQSVAKLGYYDYDIRTDLWRSSPILDTIFGITT 472

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAA---------IITSFDDERKSLQGTLELLS 522
           + +  G     + A   R    +   ++ A          II   D E + + G  ++  
Sbjct: 473 DYIRTGQGWLELVAPAMRAEMGAYLLEIQAGQHDFDKVYPIIRPCDGEERWVAGLGKIER 532

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           D+            + + T  ++T+  RAE++L +K + L +++     F    S++LR 
Sbjct: 533 DA-------EGRPTRMVGTIKDITEQHRAEQSLRDKADELERSNTELEQFAYVASHDLRE 585

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  +  + DLL       L+    +++ +    +T +  L+ ++L+ + +  G +    
Sbjct: 586 PLRMVSSYVDLLARRYNDKLDDDAREFIAFAKDGATRMDRLILELLEYSRI--GRVTRPM 643

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + L  ++    +++A K+ E            L + + D + L+++F  ++ NA+ + 
Sbjct: 644 LPVSLGGVVERALRALAPKIEECGAEFAT-PPEVLPTVLGDAEELMRLFQNLIGNAIKYR 702

Query: 703 SKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
                  + ++A     ++I +V +NG  I     + VF  F     RG+  G G+GL++
Sbjct: 703 DPERKPVISIEAENTGKEWILTVIDNGIGIEPKYFERVFLIFQRLHRRGEYEGTGIGLAV 762

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  +  HGG + + S+    +  +  +P
Sbjct: 763 CKKIVEHHGGRIWVESTPGQGSRFSVTLP 791


>gi|295402180|ref|ZP_06812138.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975771|gb|EFG51391.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 442

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 105/225 (46%), Gaps = 3/225 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + +  FV + S+ELR+PL+      ++++  +   L     Q  + +      +  L+ND
Sbjct: 215 QRQKEFVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVFDDMKDELRRMTKLIND 274

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +L LA  DA  ++L     +L  +++E+ +       + +I+        + +   D++R
Sbjct: 275 LLWLARSDANAIELTKEWFLLPPVIDELIRKCRPLAEQKHIKFVTNIQKDM-AIYGDKER 333

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+   +L NA+ ++++   + +   RD  +    + + G  IP +    +F RF    
Sbjct: 334 IIQLIFILLDNAVKYNTENGQIKIAVERDRKNVNIEISDTGIGIPVEQQALIFERFYRAD 393

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               R+  G G+GLSI +  ++ HGG + + S +   +     +P
Sbjct: 394 PSRSRKQQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438


>gi|221369052|ref|YP_002520148.1| Sensor protein [Rhodobacter sphaeroides KD131]
 gi|221162104|gb|ACM03075.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 816

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 151/354 (42%), Gaps = 23/354 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             + ++  V +    GRI+  N A   L+  +    S            +  + +  G+D
Sbjct: 198 IFESMNNPVLLVDDGGRIENMNFAAARLFLQDALPGSVYY-----GPEANLRFADLAGFD 252

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQTMLTFVNVTDSVRAERALT 556
           L A  +      R      L  + +     +   + +   + +   V   D   A RA  
Sbjct: 253 LEAVKL------RGEAGDVLTCIGERWYSITAQEMLDVSRKFVGIVVTFHDVTEARRA-- 304

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              E        K  F+  +S+E+R+P+ +I G T+LLK S+L S +     YV+ I  S
Sbjct: 305 --REQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSELASRD---RGYVDAIERS 359

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           + +L ++V+D+LD A +++G+++L      ++ +L++V + +   +        VI    
Sbjct: 360 TEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMMQPLVRRKPQLRIVIERTD 419

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMC 735
           L   + D  +L QI   + SNA+ F+ +G+ VI       G  F F+V + G  I  +  
Sbjct: 420 LPPVLGDAGKLRQILINLTSNAVKFTPEGTVVIGAERLAGGHRFRFTVSDTGPGIAAEKL 479

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +F  ++ +     RR  G GLGL+I        GG + + S+    +     
Sbjct: 480 EEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLDVRSTPGFGSRFTLE 533



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 49/149 (32%), Gaps = 8/149 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + ++      I  ++   + + D    ++  N +   L+  D    +     +  L F
Sbjct: 186 RALVNEKNKYLTIFESMNNPVLLVDDGGRIENMNFAAARLFLQDALPGSVYYGPEANLRF 245

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
              A    E +  +    ++ +         + W+  +     ++  S    G +  F +
Sbjct: 246 ADLAGFDLEAVKLRGEAGDVLTCI------GERWY--SITAQEMLDVSRKFVGIVVTFHD 297

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +T       +   L + + + +  +S  +
Sbjct: 298 VTEARRAREQAEALARAKTDFLATMSHEI 326


>gi|51245645|ref|YP_065529.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50876682|emb|CAG36522.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1358

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 174/389 (44%), Gaps = 26/389 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVF--GPDGRIKLS---NPAFRSLWKTEENRLSPGTHIR 481
              N   K+Q + I+  S  +AV       R++++   + +     +   +  + G+  R
Sbjct: 522 ASINRFTKIQRDFIEQSSANLAVILNAAQSRMRIATLLDQSQEQQRELASSNRALGSQAR 581

Query: 482 NIAATCSRYYNESDG----WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI-IPLPNA 536
            +  + +    + +      +       +       LQ   E L  +  E          
Sbjct: 582 ALKESETELQAQQEELRITNEELEEQTRALKQSEAELQAQQEELRVANEELQQRTGALEK 641

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q         + + A++ +  K + L  + + K+ F+ ++S+ELR+PL +I+  + LL T
Sbjct: 642 QRKEISTKNIELLDAQKIVEGKVDELETSGKYKSEFLANMSHELRTPLNSILILSQLLST 701

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +K G+L+ KQ +    I +S   LLNL+NDILDL+ V+AG ++L    I    +  ++ +
Sbjct: 702 NKAGNLSDKQVESAGAIHSSGAELLNLINDILDLSKVEAGKVELIIEEIPFKRIEADLHR 761

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
                 H+  I   +  + +L  +   D QRL Q+   +++N+  F+ +GS V L+    
Sbjct: 762 LYKDLAHDKGISFDITLNPQLPQTLKTDSQRLQQVLRNLITNSFKFTLQGS-VSLEIEPA 820

Query: 714 ----------RDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
                           +F+VK++G  IP+   +++F  F  V  +   +  G GLGLSI 
Sbjct: 821 PAEQLLNTRLEGQKAIVFAVKDDGIGIPQAQQQNIFEAFQQVDGSTSRKYGGTGLGLSIS 880

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    L GG +++SS ++  +T    +P 
Sbjct: 881 KELTKLLGGFITLSSVEDEGSTFRITLPL 909


>gi|300114079|ref|YP_003760654.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           watsonii C-113]
 gi|299540016|gb|ADJ28333.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           watsonii C-113]
          Length = 371

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 152/366 (41%), Gaps = 10/366 (2%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             +        D   + + +    G I L N     +       L  G  I  +     R
Sbjct: 3   REIQLPFERLFDTAPDAMVISNYQGHIVLVNTMAERMLGYSRAEL-IGQPIEILVPQQHR 61

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQTMLT--FVNVT 546
             +       +    T    E + L    +  S    E S+ P+  +   ++T    ++T
Sbjct: 62  DGHTLQRHKYYRHPRTRPMGEGRELYAVRKDGSMFSAEISLSPMEVDGHLLITSAIRDIT 121

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  + ++ L ++ + L +++     F    S++L+ PL  +  +  LL       L+S  
Sbjct: 122 ERKQIQKTLEQQAQDLMRSNAELEQFAYVASHDLQEPLRMVSSYAQLLARRYRNQLDSDA 181

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++E++   +T +  L+ND+L  + V  G     ++T   N ++ +V  S+   + E  
Sbjct: 182 DEFIEFMVDGATRMQALINDLLAYSRV--GTKSKTFTTADSNWVIQQVLGSLQLVIKETQ 239

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKN 725
            R+ V     L   +AD  +L Q+F  ++SNA+ F  + +  + + A  +  + IFSV +
Sbjct: 240 ARLSVD---PLPILIADEAQLAQLFQNLISNALKFRRETTPRIHISAKAEKNEIIFSVAD 296

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           NG  I     + +F  F     + +  G G+GL+I +  +  HGG + + S     TT  
Sbjct: 297 NGIGIEPQYTERIFLLFQRLHSKREYPGTGIGLAICKKIVECHGGRIWVESRQGAGTTFL 356

Query: 786 CRIPSK 791
             +P +
Sbjct: 357 FALPLE 362


>gi|295087206|emb|CBK68729.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Response regulator
           receiver domain./Two component regulator
           propeller./Bacterial regulatory helix-turn-helix
           proteins, AraC family./Y_Y_Y domain. [Bacteroides
           xylanisolvens XB1A]
          Length = 1298

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 6/252 (2%)

Query: 539 MLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           +  F  +  S+ AE  L     E   + +++K  F  ++S+ELR+PLT I+     +   
Sbjct: 750 VFRFFWMRKSMEAELELERRDKEHQEEINQMKMRFFINISHELRTPLTLILAPLQEIINK 809

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                   Q +Y++    ++  LL+LVN ++D    + G+ +L       + L+ +    
Sbjct: 810 ISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLF 866

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                    I   + S+ +    + D   L  I + +LSNA  ++  G ++ +    +N 
Sbjct: 867 YDKLARHKKITYTLHSELEEKEELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENN 926

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +  V + G  IP +    +F RF       +  G G+GLS+V+  + LH G + + S 
Sbjct: 927 WLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQRLVELHHGRIELDSE 984

Query: 778 DEGVTTINCRIP 789
           +   +T +  +P
Sbjct: 985 EGKGSTFSVYLP 996


>gi|237746502|ref|ZP_04576982.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377853|gb|EEO27944.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 718

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 129/275 (46%), Gaps = 10/275 (3%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            +L  +I+ +         ++     +A R L +  E   +A+  +  F+  +S+E+R+P
Sbjct: 299 GILVMAILIVSFVAMANLNIHNYRVAQANRQLRQAVEQANQANAARRDFLARISHEIRTP 358

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G  +L++         K  +Y+   + S+  LL L++D+LD++ +++G + L+  
Sbjct: 359 LNGIVGMIELVRLEY--DAKEKCLEYLRKATVSANYLLGLLSDVLDISRIESGKLTLHND 416

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFS 702
              +  L  EV+    T   +  + I++   G K   FV D  RL Q+   ++SNA+ ++
Sbjct: 417 LADMRVLREEVEALAGTLAEKRQLTIRIDDSGMKHRYFVTDYLRLKQVLVNLVSNAIKYT 476

Query: 703 SKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVG 755
             G  +++  + +             V+++G  I  D  K +F  F       +R  GVG
Sbjct: 477 GDGGHIVVNFSEEAATEDSRSLVTLQVQDDGQGIAPDKLKEIFEPFEQGGGGKKRENGVG 536

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGLSIV   + L GGH+++ S     +     +P 
Sbjct: 537 LGLSIVTGTVTLMGGHINVESEPGRGSRFTITLPL 571


>gi|90994583|ref|YP_537073.1| hypothetical chloroplast protein 26 [Porphyra yezoensis]
 gi|122238232|sp|Q1XD95|YCF26_PORYE RecName: Full=Uncharacterized sensor-like histidine kinase ycf26
 gi|90819147|dbj|BAE92516.1| unnamed protein product [Porphyra yezoensis]
          Length = 653

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 164/406 (40%), Gaps = 44/406 (10%)

Query: 410 GGTIWMFENLTVQVDLETKYN----TLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFR 464
           G  I+ F  +  +++   + N    T  K + ET+   +++G  +   D R+ L N    
Sbjct: 259 GALIFNFNEMAERLEKYEQQNVEKLTSEKAKLETLVSTIADGAILLDKDLRVILVNRTAI 318

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE--------RKSLQG 516
             +  E   ++    I  +    ++    +    +    +     E        +K+ + 
Sbjct: 319 ENFGWEGKDIAGSMIIDYLPEDINQQLFPALNDIVRKNFLEQSLCETQEICIKLQKNYKK 378

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T  +L  +VL+Y    L         + +T   R E           + +E+KN F+ +V
Sbjct: 379 TFRVLLTTVLDYKYSILKG-------IAITIQDRTEE---------VELNEVKNQFISNV 422

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL NI  F + L        N ++ +++   +  +  L  LVND+LDL+ +++ 
Sbjct: 423 SHELRTPLFNIRSFLETLYEYHDSLDNRQKLEFLAIANKETERLTRLVNDVLDLSRLESD 482

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             +    ++ L   + +  ++      +  I + +  +  L   + +   +LQI + ++ 
Sbjct: 483 Q-EYPLQSMDLVSAIEQTVRTYQLSAKDKKIDLHIDIEENLPCILGNYSLVLQILANLIG 541

Query: 697 NAMDFSSKGSTVILKAARDNG-------------DFIFSVKNNGSSIPEDMCKSVFNRFV 743
           N++ F+     ++L+  R N                   + + G  I +   + +F RF+
Sbjct: 542 NSLKFTHSDGIIVLRTYRINDSASKLNSTPLQIQKVRVEICDTGIGISKKNQERIFARFL 601

Query: 744 SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +      G GLGLSIV++ I  H   + + S  +  +     +
Sbjct: 602 RIENYVHTLEGTGLGLSIVKNIIQKHNSEIHLYSELKNGSCFFFDL 647


>gi|32400388|dbj|BAC78683.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 156/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREILTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 969


>gi|16330678|ref|NP_441406.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653170|dbj|BAA18086.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 633

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 120/257 (46%), Gaps = 17/257 (6%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +AE  LT+  EA   A+  K  F+  +S+ELR+PL  IIGF+ LL         +   
Sbjct: 142 RHQAETTLTQAKEAADAANRAKTEFLASISHELRTPLNAIIGFSQLLHRDPSL---APHR 198

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I+ S   LL L+NDIL+++ ++AG   LN   I  + LL+ ++     +  E  +
Sbjct: 199 PTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQL 258

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------RDNGD-- 718
            +KV    ++  ++  D  +L Q+   +L+NA+ F+++G  V LK         D G   
Sbjct: 259 LLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGG-VTLKVKCLTAPQTDEGQGA 317

Query: 719 ---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSI 774
                F V + G  I       +F  F       +  +G GLGL I + F+ L GG + +
Sbjct: 318 SIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKSCQGNGLGLPISQKFVQLMGGQIQV 377

Query: 775 SSSDEGVTTINCRIPSK 791
            S  +  +     IP +
Sbjct: 378 RSKVDQGSAFFFAIPVQ 394


>gi|87310341|ref|ZP_01092471.1| PAS/PAC sensor signal transduction histidine kinase
           [Blastopirellula marina DSM 3645]
 gi|87286840|gb|EAQ78744.1| PAS/PAC sensor signal transduction histidine kinase
           [Blastopirellula marina DSM 3645]
          Length = 588

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 143/383 (37%), Gaps = 25/383 (6%)

Query: 410 GGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G T   F  +   +DL   +           +  + EGV       R+ L+N A R L  
Sbjct: 226 GETARQFSQMQAAIDLRVDELTGESNRLKTVLGSMVEGVIAVDAQQRVLLANGAVRKLLA 285

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                         +              + F A I S +  R   +  +       L  
Sbjct: 286 IRAE--------DPVGRPLLELTRNRSLDESFRAAIASDEPYRNEFE--VSTTPRRTLSL 335

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
               LP        + + D     R            + ++  FV  VS+EL++PL  + 
Sbjct: 336 QANRLPGEPCPGVVMVLHDVTELRRL-----------ENMRREFVSSVSHELKTPLAAVR 384

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
            +T+ L+   +  +   +  ++  I  S+  L  L+ D+L LA +++     + + + + 
Sbjct: 385 AYTETLQLGAIEDI-ENRGYFLSQIMDSADRLHELIQDMLHLARIESREEAFDITEVPIA 443

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D++  V Q          I +++       S + D + +  I   ++ NAM ++ +G +V
Sbjct: 444 DVIENVLQVQRDVAASRQIALRIHPPEVEISVLGDEEGVRTILGNLIDNAMKYTPEGGSV 503

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFIN 766
            +    +      +VK+ G  IP+   + +F RF  V  A   +  G GLGLSIV+    
Sbjct: 504 DVAWGLEGSHVAITVKDTGLGIPQAALERIFERFFRVDKARSREMGGTGLGLSIVKHTAQ 563

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
              G V++ S     +    R+P
Sbjct: 564 AMNGGVTVESQVGEGSKFTVRLP 586



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 84/257 (32%), Gaps = 32/257 (12%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           ++      F +   AID+ +   +  +      +L ++   +   D  + +   N +  +
Sbjct: 224 ELGETARQFSQMQAAIDL-RVDELTGESNRLKTVLGSMVEGVIAVDAQQRVLLANGAVRK 282

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           L  I        P    LLE  R+          ++  E+  +   S E +++ + +   
Sbjct: 283 LLAIRAEDPVGRP----LLELTRN----------RSLDESFRAAIASDEPYRNEFEVSTT 328

Query: 398 --QTLHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
             +TL +     P     G + +  ++T    LE      V      +      V  +  
Sbjct: 329 PRRTLSLQANRLPGEPCPGVVMVLHDVTELRRLENMRREFVSSVSHELKTPLAAVRAYTE 388

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
             ++              E+  + G  +  I  +  R +       L  A I S ++   
Sbjct: 389 TLQL-----------GAIEDIENRGYFLSQIMDSADRLHELIQDM-LHLARIESREEAFD 436

Query: 513 SLQGTLELLSDSVLEYS 529
             +  +  + ++VL+  
Sbjct: 437 ITEVPIADVIENVLQVQ 453


>gi|331269704|ref|YP_004396196.1| putative phosphate regulon sensor protein [Clostridium botulinum
           BKT015925]
 gi|329126254|gb|AEB76199.1| putative phosphate regulon sensor protein [Clostridium botulinum
           BKT015925]
          Length = 455

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 121/295 (41%), Gaps = 6/295 (2%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           L  A + +     K     ++ + D     S I   +    +   +  +     +   + 
Sbjct: 165 LMLAFVVALIFSSKLANIIVKPIKDLKFITSRIARGDLDRRVDIKSNDELGELSKTFNDM 224

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            + L+    IK+ FV +VS+EL++PLT+I GF + L+       NS + +++  I     
Sbjct: 225 ADKLQNTLNIKSQFVANVSHELKTPLTSIKGFAETLR---YVENNSTRDRFLGIIDDEVE 281

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  L+NDIL L+ ++          I +   + ++   +     + NI + ++   +  
Sbjct: 282 RLTRLINDILILSDIECNKYLKKSEDIDVVACIKDIYNLMKNYSEKKNIHVNMVV-YESP 340

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D+ +  ++   I+ NA+ +S  G  V +    +    +  V++ G  I ++    +
Sbjct: 341 IICGDKDKFKEMIINIVDNAIKYSENGDQVFIGVKTEENQCVIWVEDTGVGIEKEHIPRL 400

Query: 739 FNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF            G GLGL+IV+  +    G + + S     T    +IP K
Sbjct: 401 FERFYRVDKARSRNNGGTGLGLAIVKHIVLNFNGKIYVRSKFNQGTKFTIKIPLK 455


>gi|262382344|ref|ZP_06075481.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295222|gb|EEY83153.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 637

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 127/237 (53%), Gaps = 8/237 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  +   +AD +K++F+ ++++E+R+PL  I+GF+ +L   +       + ++ + I
Sbjct: 402 QLKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEED---RETRQEFADII 458

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +L  L+ D+LDL+ +++  M L Y    +  L+ E+   I  +MHE  + +++  
Sbjct: 459 QNNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELEL-Y 516

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D +      DR RL QI + +L+NA+  + +GS +     R      F V+++G  IPED
Sbjct: 517 DCEELVMETDRNRLTQILTNLLTNAIKHTQEGS-IRFGYKRSALSVEFFVQDSGEGIPED 575

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              ++F+RFV   +    +GVGLGL+I +  +   GG++ ++S     +     +P 
Sbjct: 576 KIDTIFSRFVQLDNWS--KGVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLPL 630


>gi|315920397|ref|ZP_07916637.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694272|gb|EFS31107.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1308

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I  ++ 
Sbjct: 775  KQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIHKNAG 832

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D +  
Sbjct: 833  NLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQC 892

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                DR ++ ++ + +LSNA  ++S G T+ ++ A    + +FSV +NG+ I E+    +
Sbjct: 893  LVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEEDYVKI 952

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F RF    + GQ  G G+GL++ +  +  H G +++ S     +     +
Sbjct: 953  FERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTL 1002


>gi|260172086|ref|ZP_05758498.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1341

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I  ++ 
Sbjct: 808  KQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIHKNAG 865

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D +  
Sbjct: 866  NLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQC 925

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                DR ++ ++ + +LSNA  ++S G T+ ++ A    + +FSV +NG+ I E+    +
Sbjct: 926  LVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEEDYVKI 985

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F RF    + GQ  G G+GL++ +  +  H G +++ S     +     +
Sbjct: 986  FERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTL 1035


>gi|258541259|ref|YP_003186692.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632337|dbj|BAH98312.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256635394|dbj|BAI01363.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256638449|dbj|BAI04411.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256641503|dbj|BAI07458.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256644558|dbj|BAI10506.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256647613|dbj|BAI13554.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256650666|dbj|BAI16600.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653657|dbj|BAI19584.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1160

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 122/255 (47%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R ++ L +  E    A+  K+ F+  VS+E+R+PL +I+G+  LL+ 
Sbjct: 687 QTRLLMKEIRAHKRTDQELKKAKERAEAANLSKSRFMVGVSHEIRTPLNSIMGYAYLLEN 746

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L     KQ++ ++ I  S+  L  L+  + D++ ++AG + + +  I   + L  +  
Sbjct: 747 KMLAP--EKQNEGLKVIQRSAEHLSGLIEGLFDISKIEAGRLDILHDKINFQEFLKHLTG 804

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +  +++   +         L    + D++RL QI   +LSNA+ F+  GS V      +
Sbjct: 805 MLRFQVNNKKLVFIEDIPENLPEYVMTDQRRLRQILINLLSNAIKFTPSGS-VSFSVRWN 863

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                F +++ G  IP+   + +   F  ++H    + +G GLGL+I    + + GG  +
Sbjct: 864 MEIATFEIRDTGIGIPDSDIERIQEPFQRSSHPDSHRIQGTGLGLTITRLLVQILGGEFT 923

Query: 774 ISSSDEGVTTINCRI 788
           I S+    TT   R+
Sbjct: 924 IKSTVGQGTTCRVRL 938


>gi|237719620|ref|ZP_04550101.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229450889|gb|EEO56680.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1341

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             + + + ++ K  F  ++S+E+R+P+T I+G  DLL  S  G L++     +  I  ++ 
Sbjct: 808  KQYIEEMNQSKLRFFTNISHEIRTPITLILGQVDLLLNS--GKLSTYAYSKLLNIHKNAG 865

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +L+ ++LD    + G++KL  S   L  LL E            NI   + +D +  
Sbjct: 866  NLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQC 925

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                DR ++ ++ + +LSNA  ++S G T+ ++ A    + +FSV +NG+ I E+    +
Sbjct: 926  LVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEEDYVKI 985

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            F RF    + GQ  G G+GL++ +  +  H G +++ S     +     +
Sbjct: 986  FERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTL 1035


>gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1334

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 2/225 (0%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            ++ K  F  ++S+E R+PLT I+   ++L       +       +  I  ++  +  L+ 
Sbjct: 812  NQSKLRFFTNISHEFRTPLTLIVSQLEMLMER--SDIQPLVYSKLVNIHRNTLRMKRLIT 869

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            ++LD    + G  K  YS   +   L+E+  S         I ++ ++  K      D  
Sbjct: 870  ELLDFRKQEQGFEKFKYSKQDIYAFLDEIYLSFKEYARGKQINLEFLNKDKNLEVWFDVV 929

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            +L ++   +LSNA  ++  G T+ L         + +V + G  I E+    +F+RF   
Sbjct: 930  QLEKVIYNLLSNAFKYTPLGGTISLSVQEYENSVVVTVSDTGVGIAEESLDKIFDRFYQV 989

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 ++G G+GL++ +S I  H G +S+ S +   TT    +P 
Sbjct: 990  DSMNNQKGTGIGLALAKSIIEAHKGKISVRSMEGKGTTFVVELPL 1034


>gi|326201365|ref|ZP_08191237.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325988933|gb|EGD49757.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 467

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 14/288 (4%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           A+  S     K++ G  EL+++  L+  I                +  +    L      
Sbjct: 191 ALAHSIIHPIKNVTGAAELMAEGNLDVRI----------CKSRNDEIGKLSDTLNYMASE 240

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           ++K + IKN F+  VS+ELR+PLT+I G+ + +            S  +  I   S  L 
Sbjct: 241 IQKRERIKNDFISTVSHELRTPLTSIKGWANTIIDDDYSD-REILSDGLNIIVKESDRLT 299

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
           ++V ++LD +   +G ++L      ++ +++ +++ ++ +  +  I      +  +    
Sbjct: 300 DMVEELLDFSRFVSGNVELKKEKTDVSSIVDYIQKQMSDRAKKEKISFVAKCE-NIPIVD 358

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR R+ Q+   +L NA +F+ +   V L +  +N + +F V++ G  I  +    V  +
Sbjct: 359 LDRNRITQLLINLLGNAFNFTPQNGRVALISFWENENVVFRVEDTGCGISPEELPLVTEK 418

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F            GLGLSI +  + LH G +SI S  +  T +  RIP
Sbjct: 419 FYKGNSSNSH--TGLGLSICDEIVKLHNGSLSIESELDKGTIVTVRIP 464


>gi|149203305|ref|ZP_01880275.1| signal transduction histidine kinase [Roseovarius sp. TM1035]
 gi|149143138|gb|EDM31177.1| signal transduction histidine kinase [Roseovarius sp. TM1035]
          Length = 734

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/581 (16%), Positives = 221/581 (38%), Gaps = 45/581 (7%)

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN--SFGEAGIAIDVSKEI 299
           ++    +++      A   +F   V   +  + ++  +   L+  +   A +A  + +  
Sbjct: 24  EVLMRRVEQVTDDGGAAYAHFERAVILEDQISERTRDLEHALDLLNDSNAQLAQAIREAE 83

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
                L +  E +       A+FD +  L  HN  F          +A      E  +++
Sbjct: 84  RARSDLANAIETIQ---EGFALFDSDGRLVLHNSRFGMYM---PDLVAELRPGLEFADYV 137

Query: 360 RSANK-----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           R A++     LP+  +   W      +++         +L     + V       G T+ 
Sbjct: 138 RHASQSRFLELPDMQSRGDWAARRMQLHQEKHVM-FNLNLTGDCWVQVSEHRTRDGQTVI 196

Query: 415 MFENLTVQVDLETKYN-----TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           +  ++T  + LE +          ++   T++H+ +GV +F   G+++  N    S+   
Sbjct: 197 LQTDITDIIRLERRERGKLLDDQAQLIRATLEHIDQGVCIFDRSGQLRGWNQNAGSMLSI 256

Query: 470 EENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
             +R   G     I       +  E        A+     D R  L+  +   +   L+ 
Sbjct: 257 PISRFRVGIEFDVILRRIGSDFEIEGGLSAHDIAVWVGAQDRRAPLRFYMRSGTHKTLDV 316

Query: 529 SIIPLPNAQTMLTFVN-----------VTDSVRAER-------ALTEKNEALRKADEIKN 570
               +P+   +++F +              + R E+        L +      +A+  K+
Sbjct: 317 FARQMPDRGFVISFSDVTAERAAARALAHANERLEQRVRDRTLELEDALAKAERANASKS 376

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            FV   S++LR PL+    +   L+       ++     ++    + T + ++++ +LD+
Sbjct: 377 RFVAAASHDLRQPLSAARLYLASLQEELA---SADHRVLMDKAQRALTSVEDIIDALLDI 433

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +++G ++++ + + L  + +++    A       + ++ +  G      +D   L ++
Sbjct: 434 SRLESGHVEVDVTHVPLRRITDQLIDEFAPIAAIKGLDLRYVPCG--AMVESDASYLRRV 491

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRG 749
              +++NA+ ++  G  V++ A R   +    V++ G  I       +F  F   +AH  
Sbjct: 492 LQNLIANAIRYTPSG-KVLVGARRQGRNLRLEVRDTGPGIAPADQDRIFQEFHRLDAHVS 550

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              G+GLGL+IV+    L G  + + S        +  +P 
Sbjct: 551 AAEGMGLGLAIVDRACALLGHPLELRSDLGCGACFSVTVPL 591



 Score = 68.0 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/396 (11%), Positives = 121/396 (30%), Gaps = 35/396 (8%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           +LD +    A+     ++     S      +++       D  G ++  N  +       
Sbjct: 64  ALDLLNDSNAQLAQAIREAERARSDLANAIETIQEGFALFDSDGRLVLHNSRFGMYMPDL 123

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-----------SYK 278
               +  +  +  +      + +       +          H                 +
Sbjct: 124 VAELRPGLEFADYVRHASQSRFLELPDMQSRGDWAARRMQLHQEKHVMFNLNLTGDCWVQ 183

Query: 279 IVRVLNSFGEAGIAI-DVSKEITVND---------QLTHTYEILHNLTVAIAIFDQNRYL 328
           +       G+  I   D++  I +           Q       L ++   + IFD++  L
Sbjct: 184 VSEHRTRDGQTVILQTDITDIIRLERRERGKLLDDQAQLIRATLEHIDQGVCIFDRSGQL 243

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           +  N++   +  I ++        D +L  + S  ++   L+     +    V       
Sbjct: 244 RGWNQNAGSMLSIPISRFRVGIEFDVILRRIGSDFEIEGGLSAH---DIAVWVGAQDRRA 300

Query: 389 KDTWHLPNGQ--TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
              +++ +G   TL V     P  G +  F ++T +           +   +        
Sbjct: 301 PLRFYMRSGTHKTLDVFARQMPDRGFVISFSDVTAERAAARALAHANERLEQR------- 353

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
             V      ++ +         ++   ++  +H      + +R Y  S   +L +A    
Sbjct: 354 --VRDRTLELEDALAKAERANASKSRFVAAASHDLRQPLSAARLYLASLQEELASADHRV 411

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
             D+ +    ++E + D++L+ S +   + +  +T 
Sbjct: 412 LMDKAQRALTSVEDIIDALLDISRLESGHVEVDVTH 447


>gi|320581795|gb|EFW96014.1| Histidine kinase osmosensor [Pichia angusta DL-1]
          Length = 1043

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 18/247 (7%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ + S+E+R+P+  IIG T L   ++   L   Q + +  +   + 
Sbjct: 474 REAAELANRAKSEFLANTSHEIRTPMNGIIGMTQLTLETQ---LTQYQREMLSIVHNLAN 530

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      L   +    +++A K  E  + +    D    
Sbjct: 531 SLLTIIDDILDISKIEANRMTIEEIDFSLRGTVFGALKTLAVKAIEKQLDLIYKVDNSFP 590

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF--------IFSVKNNGSS 729
            + V D  RL Q+   +  NA+ F+S+G  V +   + +            F V + G  
Sbjct: 591 DNLVGDSFRLRQVILNLTGNAIKFTSRG-KVTVSVKKTSRVINNTDKLLLEFCVSDTGIG 649

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I +D    +F+ F        R   G GLGLSI +  I+L GG + ++S+    +     
Sbjct: 650 IEKDKLGVIFDTFCQADGSTTRKFGGTGLGLSISKQLIHLMGGEIWVTSNYGEGSNFYFT 709

Query: 788 I---PSK 791
           I   P+K
Sbjct: 710 ILVSPAK 716


>gi|55821168|ref|YP_139610.1| sensor histidine kinase [Streptococcus thermophilus LMG 18311]
 gi|55737153|gb|AAV60795.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK
           Spy) [Streptococcus thermophilus LMG 18311]
          Length = 446

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 141/386 (36%), Gaps = 32/386 (8%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L               + ++S+GV      G+I + N   + L    +   
Sbjct: 74  LNDLSDVFRLTHENLIQEKNRLSSVLSYMSDGVIATNRLGQITMINSTAQRLLNL-DRET 132

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +    I +I    + Y       +L +         R +    + L     + +++I   
Sbjct: 133 ATQMSILDILDGENPY----TYSELLSKTPEIHLSRRDANDEFVTLR----VNFALIRKE 184

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 185 SGFISGLVAVLHDATEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 233

Query: 595 KTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                G+LN + +  +++     +  ++ ++ D+L L+ +D    +LN         +  
Sbjct: 234 DD---GALNEEIAPNFIKVSLDETNRMMRMITDLLALSRIDNKSTQLNVEMTNFTAFMTY 290

Query: 654 VKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +         +      +  I             D  ++ Q+   IL+NA+ +S  G  +
Sbjct: 291 ILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKMTQVIDNILNNAIKYSPDGGKI 350

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            +     +   I S+ + G  IP+     +F+RF          + G GLGLSI +  + 
Sbjct: 351 TVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVK 410

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            H G +   S     +T    +P  +
Sbjct: 411 QHNGFIWAKSEYGKGSTFTIVLPYDQ 436


>gi|328866981|gb|EGG15364.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1667

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 158/383 (41%), Gaps = 31/383 (8%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           +L      E +  +L K+  E +        V    G I  +NPAF ++++ +   +   
Sbjct: 597 DLKETERKEERIQSLFKISNEAL--------VLHKGGYITDANPAFENMFQIKLKDILYP 648

Query: 478 TH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +     +  ++             + + D   ++    +     +   Y+  P+ + 
Sbjct: 649 PSGVWEFLPSLEKFEGRDIKLGPVEE-MEAVDSSGRTFDVEVRT---NKANYAGKPV-DV 703

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +++        + A+ AL +       A E K  F+  +S+EL++P+  I G  ++L+ 
Sbjct: 704 FSIIDITGRKKLIEADVALRK----AEAATEAKVVFLTTISHELKTPIQGIYGLVEVLEQ 759

Query: 597 S-KLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +  +++  Q  + +E I +S+  L  LV DILD + ++AG M L      +  L+ E 
Sbjct: 760 NIQEENVDINQSQELLELIRSSANYLFTLVVDILDYSKIEAGKMDLVIKDFSMLKLIEET 819

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++    +  + +    D  +   +  D  R+ +I    +SNA+ F+ +G  + +  +
Sbjct: 820 SNIMSKSAAQKGLELVFYVDYNMPILLEGDANRIRRILLNFISNAIKFTEEG-QIKISVS 878

Query: 714 RDNGDFI-------FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
               D +       F ++++G  I  +    +FN F    +++  + +G GLGL I +  
Sbjct: 879 VIATDLVHSEYTIKFDIEDSGIGIKPEDQSKLFNAFTQIDSSNSRKYQGTGLGLIISKKL 938

Query: 765 INLHGGHVSISSSDEGVTTINCR 787
             + GG V   S     +T    
Sbjct: 939 AQMMGGDVGYRSIYGKGSTFTFH 961


>gi|327193898|gb|EGE60773.1| hypothetical protein RHECNPAF_1340019 [Rhizobium etli CNPAF512]
          Length = 538

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 137/307 (44%), Gaps = 16/307 (5%)

Query: 489 RYYNESDGWDLFAAIITSFDDERK----SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           R   ++   DL     +   D+R+     +  T    +D  L   I  L +         
Sbjct: 192 RRGEDAASVDLRLDRPSVSRDQRQFAYLRMDMTARRDADGELAAVIAQLRDVSV------ 245

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LN 603
                +       +      A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N
Sbjct: 246 ---EQQLRAEAQSRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFEN 302

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +Q +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A +  
Sbjct: 303 DRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQAK 362

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    +V
Sbjct: 363 TKGVTLTSRIQRSLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSIDAAARDGILKLTV 422

Query: 724 KNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I  D    +   FV   N +  +  G GLGLS+V+  + LHGG+ +I+S     
Sbjct: 423 SDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIASQPGEG 482

Query: 782 TTINCRI 788
           T I   I
Sbjct: 483 TIITIEI 489


>gi|323490770|ref|ZP_08095972.1| two component system histidine kinase [Planococcus donghaensis
           MPA1U2]
 gi|323395652|gb|EGA88496.1| two component system histidine kinase [Planococcus donghaensis
           MPA1U2]
          Length = 462

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q  L+     +      A+T+ +  L +  + +N F+  +S+ELR+PLT I G+ D+L
Sbjct: 203 NNQVDLSNERNDELGELANAITKLSTDLDRLKKARNEFLSSISHELRTPLTYIKGYADIL 262

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +     +   ++ +Y+  I   +  L +L+ ++ DLA +D     +    + + +LLN V
Sbjct: 263 ERG--DTTEREREEYLSIIREETAHLTSLIGNLFDLAKLDRNQFAIEQKKVSIAELLNSV 320

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +     E  I + V     L ++V D +R+ Q+   IL NA   S  GS V +    
Sbjct: 321 ALLVKPAFEEKQITLSVQCSEDLQAYV-DSERIQQVLLNILDNARKHSFSGSDVRITCTE 379

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
           +       +++ G  IPED    VF+R      +   +R G GLGL+I +  +  HGG +
Sbjct: 380 EENKIAIRIRDEGQGIPEDELPFVFDRLYRVEKSRSRERGGSGLGLAIAKEIVESHGGQI 439

Query: 773 SISSSDEGVTTINCRI 788
           +I S     TT+  R+
Sbjct: 440 NIDSQVGEGTTVTVRL 455


>gi|283853554|ref|ZP_06370793.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283571053|gb|EFC19074.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 545

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/539 (17%), Positives = 191/539 (35%), Gaps = 102/539 (18%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D +   ++ N +F  L+ +    +  +   D            PE     T  +   SV 
Sbjct: 29  DASGVYRYANTAFCRLFGLSREAVVGHTDADLFP---------PENAERHTRADR--SVL 77

Query: 383 KSSETHKDTWHLP-NGQTLHVIVTSNP-------RGGTIWMFENLT-------------- 420
               +    + +  NG+T+ + V   P         G      N+T              
Sbjct: 78  AGGRSDSFEYEVARNGRTVWLQVLKTPVADASGQAAGLFCTARNITGHKQREAQARLTRN 137

Query: 421 -------------------------VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
                                     +   E      ++     +++   G+A    +  
Sbjct: 138 ELEKDVSEQAEDLRQANQELRRQIEERHKAEQALEQSLRTVNLILENSPIGIAFVS-ERV 196

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKS 513
           ++ +NP F  L+      +        +  + + +Y + + ++ F           ER  
Sbjct: 197 VQRANPRFHELFARPGGSI--------LGLSTAAFYPDREAFEAFGREFYPILGRGERVD 248

Query: 514 LQGTLELLSDSVLEYSII------PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +     +     II        P A ++    +VTD   AE A          A+ 
Sbjct: 249 TVRVMRRADGTDFWCRIIGQVLFPDRPQAGSIWLMEDVTDRRLAEEA-------TLAAER 301

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K  F+ ++S+E+R+PL  I+G  +LL+     +L  +Q   VE +  ++ IL++L+  I
Sbjct: 302 LKREFMDNMSHEIRTPLNGILGMAELLQ---AAALPPEQRGQVETLQEAAHILMDLLESI 358

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQR 686
           LD + +D+G  +   +   LN+++     S  +   +  + ++     +   + V D   
Sbjct: 359 LDFSRLDSGDTETRRTPFSLNNIIQGAVNSFGSAALKKGLSLRWQISPQAPDTVVGDGGG 418

Query: 687 LLQIFSKILSNAMDFSSKG--STVI-------LKAARDNGD-----FIFSVKNNGSSIPE 732
           L Q+ + ++SNA+ F+++G    V+       + A R            +V + G  +  
Sbjct: 419 LRQVLAALISNAIKFTNEGMVEVVVGLGPLGEVSAGRTGEGDSPVLLTVAVGDTGIGLAP 478

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           D  +++F  F        RR  G GLGL+I        GG + + S     +      P
Sbjct: 479 DQLETIFEPFRQADGSMTRRFGGAGLGLAIARKLAAAMGGTLEVRSEPGKGSVFCFTAP 537



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 102/322 (31%), Gaps = 76/322 (23%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLFKE 246
           L +  +    + D+   L + +D +G   +AN ++ +     G+  +  +G     LF  
Sbjct: 7   LWDDPAFAGAMMDASPDLFFFKDASGVYRYANTAFCRLF---GLSREAVVGHTDADLFPP 63

Query: 247 EIKKRMISSS----ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA---------- 292
           E  +R   +     A  ++         +G     ++++   +      A          
Sbjct: 64  ENAERHTRADRSVLAGGRSDSFEYEVARNGRTVWLQVLKTPVADASGQAAGLFCTARNIT 123

Query: 293 -----------------IDVSK----------------------EITVNDQLTHTYEILH 313
                             DVS+                      E  +   L     IL 
Sbjct: 124 GHKQREAQARLTRNELEKDVSEQAEDLRQANQELRRQIEERHKAEQALEQSLRTVNLILE 183

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           N  + IA F   R +Q  N  F EL+      +            L +A   P++  ++ 
Sbjct: 184 NSPIGIA-FVSERVVQRANPRFHELFARPGGSILG----------LSTAAFYPDREAFEA 232

Query: 374 WKENIFSVYKSSETHKDTW--HLPNGQTLH------VIVTSNPRGGTIWMFENLTVQVDL 425
           +    + +    E           +G          V+    P+ G+IW+ E++T +   
Sbjct: 233 FGREFYPILGRGERVDTVRVMRRADGTDFWCRIIGQVLFPDRPQAGSIWLMEDVTDRRLA 292

Query: 426 ETKYNTLVKVQGETIDHLSEGV 447
           E       +++ E +D++S  +
Sbjct: 293 EEATLAAERLKREFMDNMSHEI 314



 Score = 38.0 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 5/147 (3%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           G  +D   +        G  + +N AF  L+      +   T         +  +  +D 
Sbjct: 15  GAMMDASPDLFFFKDASGVYRYANTAFCRLFGLSREAVVGHTDADLFPPENAERHTRADR 74

Query: 497 WDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
             L      SF+ E  R      L++L   V + S      A    T  N+T   + E  
Sbjct: 75  SVLAGGRSDSFEYEVARNGRTVWLQVLKTPVADASGQA---AGLFCTARNITGHKQREAQ 131

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELR 581
                  L K    +   ++  + ELR
Sbjct: 132 ARLTRNELEKDVSEQAEDLRQANQELR 158


>gi|117618556|ref|YP_854589.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559963|gb|ABK36911.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1195

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 163/386 (42%), Gaps = 20/386 (5%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           + + + +  +   E   +  +K   + +D     +     + R+ L N  + S +  +++
Sbjct: 550 LSLHKQVRQRRAAEVALSAQLKFIEDLVDGTPHPIYARDREDRLVLCNSTYASFFGEDKS 609

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-II 531
           RL   T   ++       +      DL  A         +     L + + SV  Y  + 
Sbjct: 610 RLLGSTMAEDVQRW---PFLAPLFEDLSTARTVRCA---RQGDHRLSMATGSVAVYHWVQ 663

Query: 532 PLPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           P  +        +  +++V++ +R    L   ++  ++A+  K++F+  +S+E+R+P+  
Sbjct: 664 PYYDLEGNVQGGIGGWIDVSERLRLLEELALASQDAQEANRAKSTFLATMSHEIRTPMNA 723

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG  +L  T +   L+ +    +     S+  LL+L+ DILD++ +++G ++L      
Sbjct: 724 IIGLLEL--TLRRDRLHEEDKTSLSIAHGSAKDLLSLIGDILDISKIESGRLELRPEPHE 781

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +  L   V         + N+++++ + G+      D     QI S ++SNA+ ++ +G+
Sbjct: 782 ITALTASVVTVFTALARQKNLQLEL-AAGEPRWVQIDGICYKQILSNLISNAIKYTEQGA 840

Query: 707 T-VILKAARDNGDFIFS--VKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIV 761
             V L++   +G       +++ G  I       +F  F         QR G GLGL I 
Sbjct: 841 VRVELQSKTSDGWCTLQLVIRDTGIGIAPAEQARLFQPFGQARQPEHIQRSGTGLGLMIS 900

Query: 762 ESFINLHGGHVSISSSDEGVTTINCR 787
            S     GG + + S     T I+  
Sbjct: 901 RSLCESMGGSLLLESEPGHGTCISIE 926


>gi|254785705|ref|YP_003073134.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
 gi|237685079|gb|ACR12343.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
          Length = 737

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/385 (24%), Positives = 168/385 (43%), Gaps = 45/385 (11%)

Query: 415 MFENLTVQ-VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN------PAFRSLW 467
           + E ++ +  +LE +   L   Q E ++ +S+ +A       I+L+N         + + 
Sbjct: 235 LQEEISAKTAELERRRQELNAHQLE-LNKISDIIA----SKEIQLTNLNSTLARQQKRIS 289

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           + +    + GT + NI    +  +       L A II ++ ++R+      E L     E
Sbjct: 290 EMDNTISTQGTMLVNIGILAAGAFL------LVAVIIWAYLNKRRDA----ERLEARTRE 339

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            +I                     +  L        +A+  K+ F+  +S+ELR+PL  I
Sbjct: 340 LNIT--------------------QDRLVIAKAKAEEANLAKSEFLSLMSHELRTPLQAI 379

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG+TD++            S  +  +  +S  LL L+N +LDLA +++G M L    + L
Sbjct: 380 IGYTDVVIEDLYVEGMDHLSTDLTRVVNNSQRLLRLINGVLDLAKIESGHMDLTLEHLEL 439

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           + L+NE   ++  +  E N+ ++   +    + + DR++LL I   +LSNA  F+ +G  
Sbjct: 440 HSLVNEAIDNVKPQFDEKNLPLETDLESIPEAALVDREKLLHIILNLLSNACKFTDRG-R 498

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           V L    +      + ++ G  I       VF+RF        R+  G GLGL+I + F 
Sbjct: 499 VTLAVKHNANAITITCRDTGMGIDAAALPFVFDRFQQVDSSATRQHSGSGLGLAITKQFC 558

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            L GGH++++S     T     IP 
Sbjct: 559 ELMGGHITVNSEPGRGTHFKVEIPL 583


>gi|152974373|ref|YP_001373890.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023125|gb|ABS20895.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 462

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 110/251 (43%), Gaps = 5/251 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
              +      A+      L    + ++ F+  V++ELR+PLT + G+ ++ +  K  +  
Sbjct: 210 RNDEIGELASAIQTLANDLHYMKKERSEFLASVAHELRTPLTYVKGYAEIAQ--KRTTQP 267

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++ +Y+  I   +  + NLV D+  LA ++     +    I L   LN +   +     
Sbjct: 268 TEREKYLSIIKEEADYITNLVQDLFILAQMEKHNFLIEAKRIDLEKFLNRIVTKVNGIYV 327

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + ++ + +     L     D +R  Q+   IL+NA   S++ S + +           S+
Sbjct: 328 QKHLTVSLTCPPSL-FITLDERRFEQVIMNILNNAYRHSAEYSVITITVTAYVSHIKISI 386

Query: 724 KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  IP +    +F RF            G GLGL+IV+  + LH GH+++SS     
Sbjct: 387 QDTGEGIPPEDIPHIFERFYRVDKARSRATGGTGLGLAIVKEIVELHDGHITVSSKLNKG 446

Query: 782 TTINCRIPSKE 792
           T     +P ++
Sbjct: 447 TCFTITLPREK 457


>gi|108762962|ref|YP_628459.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466842|gb|ABF92027.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 642

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 151/376 (40%), Gaps = 24/376 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                +  V   T D ++EGV V   + R+   N  F  +W   E  +      R +   
Sbjct: 276 ESLAHMNSVLRATFDSIAEGVIVVDLNKRVTAFNKRFLDIWGLTEEMMVDRDAERVLVRA 335

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                +        + I   F+   +    T+ELL   +LE   +P      ++  V   
Sbjct: 336 AGGVKHPES---FTSRIRERFEPSEEVDVETVELLDGRILERKSLPQRMGGAIIGRVWSY 392

Query: 547 DSVRAERALTEKNEALRKADEI----KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             V AER    + E L +  +     ++ F+   ++EL++PLT +     +L+       
Sbjct: 393 REVTAERQAEAERERLLREAQEAIRVRDDFLSIAAHELKTPLTPLKLHLQMLRQHGAEG- 451

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +   +++V+      + L  LVND+LD + +  G + L +  +VL +L ++V   +  ++
Sbjct: 452 DGASARHVDKSLMQVSRLTGLVNDLLDTSRIQEGRLTLKHGPVVLQELAHDVVSEM--RL 509

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + R++  +       + D  RL Q+   ++ NA  +S  G TV ++ AR++     S
Sbjct: 510 SSAHHRVEYEAPEAPLVVLGDADRLAQVLVNLMENAFKYSPSGGTVRVRVAREDRHAHVS 569

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--------GQRRGVGLGLSIVESFINLHGGHVSI 774
           V++ G  IP D  + +F RF    +         G          I    +  HGG + +
Sbjct: 570 VQDEGIGIPRDQQEHLFERFFRARNAPISGFGGLGLGL------YICGDIVERHGGRLWV 623

Query: 775 SSSDEGVTTINCRIPS 790
            S     +T    +P 
Sbjct: 624 ESVLGHGSTFRFTVPL 639



 Score = 75.7 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 82/258 (31%), Gaps = 22/258 (8%)

Query: 199 FDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ-----KAIGESRKLFKEEIKKRMI 253
                      D  G +LW + +    T  +G  FQ     + +     L +        
Sbjct: 165 LGQALQAALIVDAHGRVLWMDDALTHATGPQGEPFQGRSVAEVLARLPWLAQAMQPALQG 224

Query: 254 SSSALEKNFCETVSTLEHGNNKSY-----KIVRVLNSFGEAGIA-IDVSKEITVNDQLTH 307
            +   E+               +      ++    +S G+     +      ++    + 
Sbjct: 225 KAGVHEEPGLTAFVLPMFDEQGTLLGACARLQLPESSMGQVAEGGLTRHAPESLAHMNSV 284

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
                 ++   + + D N+ +   N+ F+++W +    +      + +L       K PE
Sbjct: 285 LRATFDSIAEGVIVVDLNKRVTAFNKRFLDIWGLTEEMMVDR-DAERVLVRAAGGVKHPE 343

Query: 368 QLNWKTWKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRG----GTIWMFENLTVQ 422
                ++   I   ++ SE    +T  L +G+ L         G    G +W +  +T +
Sbjct: 344 -----SFTSRIRERFEPSEEVDVETVELLDGRILERKSLPQRMGGAIIGRVWSYREVTAE 398

Query: 423 VDLETKYNTLVKVQGETI 440
              E +   L++   E I
Sbjct: 399 RQAEAERERLLREAQEAI 416


>gi|294634067|ref|ZP_06712622.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292829881|gb|EFF88235.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 1168

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 18/323 (5%)

Query: 482  NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            N     +R     D      A + +   E ++ Q  L+  +  + + +   L   Q    
Sbjct: 810  NTIVANARTDELLDESQRLTAELQARSAELQAQQEELQRSNAELEDKAS--LLATQNRDI 867

Query: 542  FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                    +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL  +   +
Sbjct: 868  EAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRN 927

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L  KQ +Y   I ++ + LL L+NDILDL+ V+AG M +    + L+ L+  V+ +    
Sbjct: 928  LTPKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPERVPLSRLIEYVEATFRPM 987

Query: 662  MHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--------- 711
              +  +   V +  G       D  RL QI   +LSNA+ F+ +G  V L          
Sbjct: 988  TTQKGLEFAVETATGAPADLFTDDSRLRQILRNLLSNAVKFTEQG-RVELSIEPAADEEV 1046

Query: 712  ---AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
                 R      F VK+ G  IP+   +S+F  F         +  G GLGLSI     +
Sbjct: 1047 PAGVVRGGAVVAFRVKDTGIGIPQQHLESIFGAFQQADGTTSRKYGGTGLGLSITREIAH 1106

Query: 767  LHGGHVSISSSDEGVTTINCRIP 789
            L GG V + S+    +T    +P
Sbjct: 1107 LLGGAVVVDSAPGRGSTFTLFLP 1129


>gi|260913806|ref|ZP_05920281.1| aerobic respiration control sensor protein ArcB [Pasteurella
           dagmatis ATCC 43325]
 gi|260632119|gb|EEX50295.1| aerobic respiration control sensor protein ArcB [Pasteurella
           dagmatis ATCC 43325]
          Length = 617

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 123/248 (49%), Gaps = 6/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + V AE+ L+   + + K    K   +  +S+ELR+PL  IIG + +L  S+   L  KQ
Sbjct: 100 ERVLAEKKLSIALDNIEKTSRDKTQLMATISHELRTPLNGIIGLSRILLDSE---LTDKQ 156

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ I  S+  L ++ +DI+DL  +DA  ++L+   + L  LL ++         +  
Sbjct: 157 RDYLKTIHISAISLGHIFSDIIDLEKIDARRIELSPKEVELQHLLADISNFGTLMAADKK 216

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           +  ++I    L    + D  R+ QI   ++ NA+ F+SKGS V L  + +  +  F V +
Sbjct: 217 LCFQLIESSPLPQWLMLDYARVSQILWNLIGNAVKFTSKGS-VQLNVSTNENNIYFIVSD 275

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  IP++    VF  +      GQ+  G G+GL++ ++   L GG +++ S      + 
Sbjct: 276 TGVGIPQEELHRVFEMYYQVKSSGQKPLGSGIGLAVSKTIAQLMGGDLTVESELGKGASF 335

Query: 785 NCRIPSKE 792
              +P KE
Sbjct: 336 TLTLPLKE 343


>gi|332829445|gb|EGK02094.1| hypothetical protein HMPREF9455_01728 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 576

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/367 (23%), Positives = 166/367 (45%), Gaps = 15/367 (4%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            LE       +V    I+++ + V        I   N     +     N +     +++I
Sbjct: 220 RLEKILREKKRV-ETLINNMHDPVIGLDESKFIIFINDEALKITGLSRNEILN-KPVQDI 277

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           A T           DL   +I    D   K  +G L++ SD    Y    + + +   T 
Sbjct: 278 AVT----------NDLIRTLIVELIDPLAKRDEGPLKIFSDDKQSYFEKEIIHIEINKTG 327

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            N+T+ +     L +     ++ D  K +F+  +S+EL++P+++I   T LL+ ++ G L
Sbjct: 328 ENITELI-GYVILLKNITIFKELDSAKTNFIATISHELKTPISSIKMSTQLLEHNETGIL 386

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q Q V+ I   ST LL +  ++L+++ V+ G ++LN  +     ++     ++  + 
Sbjct: 387 NDEQKQLVDGIKEDSTRLLQITGELLNMSQVETGNIQLNIQSTDPGLIVRYAIDTVKLQA 446

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               I+++V  +  +   VAD ++   +    L+NA+ +S + S + +   R+N   +FS
Sbjct: 447 EHKRIKLQVDMEPDIPLIVADAEKTAWVLINFLTNAIRYSMEDSDIEVSLRRENKGALFS 506

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           VK+ G  I     K +F R+       +  G GLGL+I + FI   GG + ++S+    +
Sbjct: 507 VKDFGKGIDSRYKKKIFERYFQIPGSLK-SGSGLGLAISKEFIETQGGTIGVNSNPGMGS 565

Query: 783 TINCRIP 789
           T    IP
Sbjct: 566 TFFFIIP 572


>gi|317063078|ref|ZP_07927563.1| PAS/PAC sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688754|gb|EFS25589.1| PAS/PAC sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 451

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 167/366 (45%), Gaps = 17/366 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            K  T        ++ +S+G+ V   + +I L N A   L   EE+ L   + +  I   
Sbjct: 95  KKIMTEKSKAEAIVESISDGIIVTDKENKILLINNAAEKLLNVEESELLDKSFLTAIP-- 152

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             + Y+          I ++F     SL   +E      +  + I   N + +       
Sbjct: 153 NRKIYDSITEVKNNNDIKSTFKQLEISLNSNVEKNIYCRVFINSIIGKNKENLGIVT--- 209

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L +    L++ D++K+ FV  VS+E R+PLT++    +LL    +G++N  Q
Sbjct: 210 --------LLQDITKLKEIDQMKSDFVSTVSHEFRTPLTSMGMAVELLGDGSVGTINETQ 261

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I   +  L  L+ D+LDL+ +++G   + +    +  ++     S+       N
Sbjct: 262 KELLKVIKEDNERLNFLIRDLLDLSRLESGKTHMKFEECSIKKIVETAVNSLKNFSENRN 321

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSK-GSTVILKAARDNGDFIFSVK 724
           ++I++ +        AD  ++L + + +L+NA+ + S +    +I++A +   + + SVK
Sbjct: 322 VKIEIRNIKDSFLVFADLNKILLVLTNLLTNAIKYKSEEREGNIIVEAFKKGKNIVVSVK 381

Query: 725 NNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IPE+  + +FN+F+    ++ G+  G GLGLSI +  I  HGG + + S     +
Sbjct: 382 DNGKGIPEEYKEKIFNKFIQVKISNDGKIEGTGLGLSICKEIIKAHGGEIWVDSVLNKGS 441

Query: 783 TINCRI 788
                +
Sbjct: 442 IFYFSL 447


>gi|301163195|emb|CBW22745.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis 638R]
          Length = 511

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 96/499 (19%), Positives = 192/499 (38%), Gaps = 37/499 (7%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL----RSA 362
           ++  IL  +   +  F+  + +   N    E  +I        PS  ++ + +    +  
Sbjct: 30  YSARILETMQTGVVFFNTEQIISGINNLACEDLQIPRD-----PSGHKITDIISIIHQEK 84

Query: 363 NKLPEQLNWKTWKENIFS------VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +  PE +      E          + +S ET    +   +G  + +       G  +  F
Sbjct: 85  DIFPELIARLKSSETDMEKLPIDTLIRSLETKVQFF--ASGCIMQLET-----GRYLLAF 137

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRL 474
            N   +V  E   + ++                F       L +  + S       +  +
Sbjct: 138 RNTMDEVTHEHLLSMILARTKIFP-------WFFDLKRNKMLIDAHWFSYLGIPAGDCEI 190

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSII-P 532
           +       +         ++    L    I  SF    +   G+ E  S+  +  S    
Sbjct: 191 TIEKFFSRVHPNERDMLADALQKQLSEKEIPDSFSYRLQRGDGSWEWFSEQSMYLSKTND 250

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + +    ++ +    E  L       +++D +K++F+ ++S+E+R+PL  I+GF++
Sbjct: 251 GSPYRIVGVCHSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSN 310

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+    +     +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL 
Sbjct: 311 LIAGGIVDLDTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLT 370

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E+ Q    ++ +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A
Sbjct: 371 EIYQKYENRIPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYA 429

Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             D+G+     V + G  IP D  K VF RF         +G GLGLS+ ++ +   GG 
Sbjct: 430 LSDHGEKIYVFVADTGCGIPSDQYKKVFERFYKIDSF--VQGAGLGLSVCKTIVEGLGGT 487

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++ S  +  +  +  +P 
Sbjct: 488 INVYSQLKEGSRFSVILPL 506


>gi|255007562|ref|ZP_05279688.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313145254|ref|ZP_07807447.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134021|gb|EFR51381.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 389

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 142/298 (47%), Gaps = 11/298 (3%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ------TMLTFVNVTDSVRA 551
           +L    +     E +      E L    LE   IP              + ++++     
Sbjct: 90  ELLNGKVKKVVIELRFWAKKKEGLVLEWLEMHAIPGKYDGNGKLLTVEGSLMSISKRKAL 149

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  LT   E   +A+ +K++ + ++++E+R+PL  I+GF  LL    +     +Q +Y+ 
Sbjct: 150 EEELTAAKERAEEANRLKSALIANMNHEIRTPLNAIVGFASLLS---IVDDEKEQQEYIG 206

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +++  LL L+ND++DL+ +++G+M +  S ++L+ L+ E++Q    K    N+ +  
Sbjct: 207 LIQSNTEHLLRLMNDVIDLSNIESGVMDMAGSDVLLDPLMEEIEQIYRPKAESRNLVLAW 266

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +        DR RL+QI   +L NA+ F+ KG+  +    ++ G   F V + G  IP
Sbjct: 267 DGEQLGAHIYTDRGRLIQILEHLLCNAIKFTLKGTVRLGYRKKEEGRIWFYVTDTGCGIP 326

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E+  + +F RFV      Q  G+GLGL + +  ++   G + + S     +T    +P
Sbjct: 327 EEKKELIFERFVKLDDFVQ--GLGLGLPLCKIIVDRLHGTIGVDSKVGEGSTFWFTLP 382


>gi|158338730|ref|YP_001519907.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308971|gb|ABW30588.1| two-component hybrid sensor and regulator, putative [Acaryochloris
           marina MBIC11017]
          Length = 805

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 135/312 (43%), Gaps = 20/312 (6%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +  T + +   S   D F         + K+ Q TL +L  +  +  I            
Sbjct: 392 VVPTLASFLLISLSLDAFYQYDRFIQTKVKAQQQTLRILEQAKTDLEI---------QVA 442

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL-KTSKLGS 601
              ++  ++   L++  EA   A   K  F+  +S+ELR+PL  I+GF+ ++ + + L  
Sbjct: 443 QRTSELQQSNLELSQAKEAAEMASRAKGKFLAKMSHELRTPLNAILGFSQMMAQDTTLSE 502

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            N K+++ +     S   LL L+NDIL LA +++G  +L      L+ LL  V+     +
Sbjct: 503 ANHKRNRLIN---QSGEHLLGLINDILSLAKLESGKQELREGPFQLSTLLETVEGIFRLR 559

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDN 716
           + +  +  +V +   L  ++  D Q+L Q+   +LSNA+ F+  G  + L+         
Sbjct: 560 IEQKGLAFRVKATPDLPPYLFGDAQKLRQVLINLLSNALKFTPAGH-IFLRIGSIPTPAG 618

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
               F +++ G  I       +F  F       + + G GLGL I + F  L GG + +S
Sbjct: 619 LTLRFEIEDTGEGIAASELHKLFVPFEQTESGEKSKAGTGLGLPISQQFAQLMGGDIKVS 678

Query: 776 SSDEGVTTINCR 787
           S     TT    
Sbjct: 679 SQVGQGTTFTFT 690


>gi|212711105|ref|ZP_03319233.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM
           30120]
 gi|212686273|gb|EEB45801.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM
           30120]
          Length = 781

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 167/435 (38%), Gaps = 20/435 (4%)

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV--TSNPRGGTIWMFENLTV 421
           +L E     T   +   V +  ++  +T    N + L++ +          + + E L  
Sbjct: 79  QLEESRQRLTRMVDKLEVMRKRDSELNTQLQGNIEQLNLEILEREKAESAHLELLEQLKQ 138

Query: 422 QVDLETKYNTLVKVQ----GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++    +     + Q       +D   + V     +      N A   L    E +L   
Sbjct: 139 EMKYREQTQIEFEQQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKQLVGL 198

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T +       +    E+D       +  +++       G       +  E   +P  +  
Sbjct: 199 TPLDIYDEEIAAKVMETDEKVFRHNVALTYEQWLVYPDG-----RKACFELRKVPFYDRV 253

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                +        ER      EAL  A   K +F+  +S+ELR+PL  I+G + +L  +
Sbjct: 254 GKRHGLMGFGRDITER--KRYQEALENASREKTTFISTISHELRTPLNGIVGLSRILLDT 311

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K   L  +QS Y++ I  S+  L N+ ND++++  ++   ++L+   ++L + +N+++  
Sbjct: 312 K---LTKEQSSYLKTIHVSAVTLGNIFNDVIEMDKIERRKVQLDNQPVMLPEFVNDLENL 368

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    ++  +     L  + + D  RL QI   ++ NA+ F+ KG   +      +
Sbjct: 369 SGLLVQPKGLKFVMDVAHGLPKTILTDGTRLRQILWNLIGNAVKFTQKGEVKLSIWREAD 428

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVS 773
              IF VK++G  IP+D    +F  +             G G+GLS+        GG + 
Sbjct: 429 NKLIFQVKDSGIGIPKDELDKIFAMYYQVRDSAGGRPATGTGIGLSVSRRLAQSMGGDIR 488

Query: 774 ISSSDEGVTTINCRI 788
           + S     +T    I
Sbjct: 489 VESDIGQGSTFTLSI 503



 Score = 38.0 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 121 FHHYIKLSKATEKL---RKEGQSFDLVAET-QNDCAIKIEGRVSGSCAFLRILSLDGIYS 176
                +L++  +KL   RK     +   +       ++I  R     A L +L    +  
Sbjct: 81  EESRQRLTRMVDKLEVMRKRDSELNTQLQGNIEQLNLEILEREKAESAHLELLE--QLKQ 138

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E+        +      + +   D+   LV++R++  +    N + +  T   G   ++ 
Sbjct: 139 EMKYREQTQIEFEQQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLT---GKSEKQL 195

Query: 237 IG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RV 282
           +G     ++ EEI  +++ +   EK F   V+           G    +++       RV
Sbjct: 196 VGLTPLDIYDEEIAAKVMETD--EKVFRHNVALTYEQWLVYPDGRKACFELRKVPFYDRV 253

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTH 307
               G  G   D+++     + L +
Sbjct: 254 GKRHGLMGFGRDITERKRYQEALEN 278


>gi|307150206|ref|YP_003885590.1| histidine kinase [Cyanothece sp. PCC 7822]
 gi|306980434|gb|ADN12315.1| histidine kinase [Cyanothece sp. PCC 7822]
          Length = 376

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 10/289 (3%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R  ++   ++L   V E  +IP+   + +     +  S R    L   NE L+  +  K+
Sbjct: 81  RPQMKIINDVLPAQVDEALVIPIEKVELLGRLKALLRSRRLTLELKAANEQLQHLNAFKS 140

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+   S++LRSPL+ I     LL+         KQ + ++ + +    +  L+NDI+ +
Sbjct: 141 RFLSMASHDLRSPLSAISASAQLLQNHYHKLSRDKQERILQLMHSGVKRMTQLLNDIVII 200

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVISDGKLGS---------F 680
              + G +  + S   L+    E+ +         + I    ++D K             
Sbjct: 201 NQAEEGKLTFHPSFFNLDQFCQELVEQFQMASGSRHQIEFMSVTDSKTDHFKLFNSDFKV 260

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             D+  L  IFS +L NA+ +S  G  +  K        I  +K+ G  IP +  + +F 
Sbjct: 261 YMDKNLLYHIFSNLLDNAIKYSPDGGIISCKLIYQEHQVICQIKDPGIGIPLEKQQKLFE 320

Query: 741 RFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV   +  + RG GLGLSIV+  + LHGG ++  S     TT    +P
Sbjct: 321 AFVRGDNVEKIRGTGLGLSIVKQCVELHGGTIACESQINLGTTFIVTLP 369


>gi|254415959|ref|ZP_05029715.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177134|gb|EDX72142.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 569

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 112/255 (43%), Gaps = 16/255 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    E   +   +K+ F+   S+ELR+PL  +IGF  L+    +     +Q ++++ 
Sbjct: 307 KELELAREQAEEVSRLKSEFLASTSHELRTPLNGMIGFLKLILEG-MADDPEEQREFIQE 365

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLN++NDILD+A ++AG M+L +S + L  L N+V    A + H  N+   + 
Sbjct: 366 AHNSALHLLNIINDILDIAKIEAGKMELEFSPVELEYLFNKVYDFTAQQAHHKNLSFTLE 425

Query: 673 SDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST----------VILKAARDNGDFI 720
                       + QRLLQ+   ++ NA+ F+ +G            V  +     G   
Sbjct: 426 IPAVYDGIVMYGNYQRLLQVMLNLVGNAIKFTDEGGITISAEVIRKKVHFQGQEFPGHVK 485

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS-S 777
             V + G  +  D    +F  F            G GLGL+I +  +   GG V   S  
Sbjct: 486 VRVADTGIGVSLDKQDKLFQSFSQVHGGLNRPYGGTGLGLAISQKLVETMGGVVHFFSMG 545

Query: 778 DEGVTTINCRIPSKE 792
           +   +T+   +P  +
Sbjct: 546 ENLGSTVTFTVPLYQ 560


>gi|329298208|ref|ZP_08255544.1| aerobic respiration control sensor protein ArcB [Plautia stali
           symbiont]
          Length = 781

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 149/376 (39%), Gaps = 10/376 (2%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E +T +   + +           +D   + V     D +    N A   L    E +L  
Sbjct: 138 EEMTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTGLSEKQLIG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         +    E+D       +  +++   +   G         + Y  +P  + 
Sbjct: 198 LTPRDIYDEDAATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYK-VPYYDR 256

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               + +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 257 VGKRSGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLD 314

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q +Y++ I  S+  L N+ ND++++  ++   ++L+   +     L +++ 
Sbjct: 315 T---DLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPLDFTGFLADLEN 371

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                     ++  +  +  L     AD  RL QI   ++ NA+ F+ +G  V+  A   
Sbjct: 372 LSGLLAQPKGLKFVMAPELPLPHKISADGTRLRQILWNLIGNAVKFTRQGEIVVRVAYHQ 431

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           +    F V+++G  IP++    +F  +     +   +   G G+GL++        GG +
Sbjct: 432 DETLHFEVQDSGMGIPQEEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQAMGGDI 491

Query: 773 SISSSDEGVTTINCRI 788
           ++SS+    +     I
Sbjct: 492 TVSSAPGQGSCFTVEI 507



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 31/210 (14%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI-----KIEGRVSGSCAFLRILSLDGIY 175
                +LSK  +KL +E ++ DL    Q   AI     +I  R+    A  R   +D + 
Sbjct: 81  EESRQRLSKLVDKL-EEMRTRDLELNQQMKEAISQLNQEISDRIKAEQA--REQVMDKLR 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            E+        +L    S  +   D+   LV++R+        N + +  T   G+  ++
Sbjct: 138 EEMTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLT---GLSEKQ 194

Query: 236 AIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI-------- 279
            IG   R ++ E+   +++ +   EK F   VS           G    ++I        
Sbjct: 195 LIGLTPRDIYDEDAATKVLETD--EKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYKVP 252

Query: 280 --VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
              RV    G  G   D+++     D L +
Sbjct: 253 YYDRVGKRSGLMGFGRDITERKRYQDALEN 282


>gi|328869028|gb|EGG17406.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1323

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 160/366 (43%), Gaps = 24/366 (6%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWK------TEENRLSPGTHIRNIAATCSRYYNESD 495
           +LS    V   +G I  +N  F ++++            + G  + NI    ++   +  
Sbjct: 283 NLSSEALVIHKNGIIVDANSTFENMFQVKLDSILHPVAAAIGEFLPNIEQYLNKSMIDIH 342

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
               F+ +      E  ++  + E  S  V       L N   +L+ ++ +   +   A 
Sbjct: 343 DQASFSLLDNKKIIETVAINSSGEEFSVEVRSQKKEFLSNPVDILSIIDTSARRKLMEAD 402

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T   +     +E K +F+ +VS+E+R+P+  I+   D+L+ +   +L++ Q  ++  +  
Sbjct: 403 TALRK-AEAVNEAKINFLTNVSHEVRTPINGILASVDILEKT---NLDNTQGDFLVCVKD 458

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  LL+L+ DILD + +++G M+L      +  +L E    + +   E  + + +  D 
Sbjct: 459 SANYLLDLITDILDFSKIESGKMQLQPVEFNMITMLEETMNIVYSTTKERGLELILFVDP 518

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKA-------ARDNGDFIFSV 723
            +    VAD  R+ QI    LSNA+ F+S G  VI    +         +       F V
Sbjct: 519 AIPIIVVADHYRIKQILLNFLSNAIKFTSTGQVVIRVNFVSCTPSVANPSSTEFKISFEV 578

Query: 724 KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  + ++  + +F  F    N      +G GLGLSI +   N+ GG +++ S+    
Sbjct: 579 EDSGIGLRQEQIEKLFTAFLQFDNHGSRNFQGTGLGLSISKKLCNMMGGEITVKSTYGSG 638

Query: 782 TTINCR 787
           +T    
Sbjct: 639 STFGFS 644


>gi|289580010|ref|YP_003478476.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289529563|gb|ADD03914.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 789

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/752 (15%), Positives = 251/752 (33%), Gaps = 111/752 (14%)

Query: 123 HYIKLSKATEKLRKEG----QSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
             + +    E+LR       +  DL  ET     I+ E R++       +    G    +
Sbjct: 59  DSVSIEHEIERLRANASDQSELLDLAMETAEGGQIRCEMRMNALDVGDAVQGAVGTVRVI 118

Query: 179 AETTLKCKKLSNHISVFKVLFDSLD--FLVWHRDQAGDILWANISYKKNTETEGIV---- 232
            E      +     + F+ LF+++   +L+  +    +I+  + +Y   T TE       
Sbjct: 119 DERKQ--AEPEATEATFRRLFENVPGNYLI-VQPGDYEIVAVSDAYLDATMTERAEILGK 175

Query: 233 --------FQKAIGESRKLFKEEIKKRMISSSALEKNFCE-TVSTLEHG----NNKSYK- 278
                         E  +  +E + +   +  A         +   E G      + +  
Sbjct: 176 TLFEIFPDNPDDPAEGAENLRESLDRVAKTGKADTMPVTHYPIPNRESGGDEFEERWWNP 235

Query: 279 ----IVRVLNSFGEAGIAI-DVSK-----EITVNDQLTHTYEILH-NLTVAIAIFDQNRY 327
               +            ++ D++      +     +L    + +   L   + +  Q   
Sbjct: 236 INSPVFDTAGELDYIVHSVEDITPIVKELQADGEQELLQETDTVDTQLASDVVLRGQELL 295

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELL----------------EFLRSANKLP----- 366
            Q    ++ +L E +  F A   +  +++                +F     +       
Sbjct: 296 RQAKQEAYKQLRESEERFRALVTTTSDVVFSTNADWSEMRSLEGADFFADTGEQETSWVE 355

Query: 367 ---EQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQTLHVIVTSNPR-------GGTIW 414
                 +    ++ I    ++  + +        +G    ++  + P           + 
Sbjct: 356 KHVPPADQPRVQDAIDEAIRTKSSVELEHQIVREDGTVAWIVSRATPLLDENGEITQWLG 415

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              ++T +V+ E       +      +  + G                    W   E+++
Sbjct: 416 AANDVTERVERERYLEDAKERLEAATEAGAVG-----------------TWEWHIPEDQM 458

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIP 532
             G               E    D F + I   D ER  + L+ T+E   +   EY +  
Sbjct: 459 VTGASFAKKFGIDPDAATEGVSLDQFISAIHDDDRERVKRRLEDTIESGEEYEEEYRVWD 518

Query: 533 LPNAQTMLTFVNVTD--------------SVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             N    +      +              S   ER   +  + L ++++    F    S+
Sbjct: 519 SNNELRWVVARGHVEYDDDGNPVTFPGALSDITER--KQFEQRLEESNKRLEQFAYAASH 576

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L+ PL  +  +  L+       L+    +++E+    +  + N++  +L+ + ++    
Sbjct: 577 DLQEPLRMVTSYLQLIDRRYTDELDKDGEEFIEFAIDGADRMRNMIEGLLEYSRIETRGD 636

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              +  I L+ +L +V+Q +   + E+   I   S   L     D  +L Q+F  +LSNA
Sbjct: 637 P--FEPIDLDTVLADVRQDLQMCIEESGAEITAES---LPRVEGDPGQLRQVFQNLLSNA 691

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           +++S     V + A R+    + SV + G  I  D  + VF  F S   + +  G G+GL
Sbjct: 692 IEYSDDTPRVEISAVRNGPKVVVSVADEGIGIDPDDGERVFEIFQSLHAQDEYAGTGIGL 751

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +I +  I  HGG + + S      T +  +P+
Sbjct: 752 AICKRIIERHGGDIWVESDPGEGATFSFTLPA 783


>gi|224535251|ref|ZP_03675790.1| hypothetical protein BACCELL_00112 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523136|gb|EEF92241.1| hypothetical protein BACCELL_00112 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 981

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 148/346 (42%), Gaps = 23/346 (6%)

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-----FDDERKS 513
           SN     L   +++ +  G      A   S  YN          I  S     + DE ++
Sbjct: 363 SNKFAHQLVGYDKDWIYGG------AENRSASYNNLAPGKYQLRIKASNSDQVWADEYRT 416

Query: 514 LQGTL----ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE---RALTEKNEALRKAD 566
           L   +         + L Y+++ +     ++      + ++ +     L   ++     +
Sbjct: 417 LDIEILAAPWASWWAYLTYTLLGIIIIYIIVIHYKRQEKLKYKLHIEQLERIHDKEMNDN 476

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K  F  ++++E+++PLT I      L   K  + ++     ++ I  S+  L NL+N 
Sbjct: 477 RLK--FHTNIAHEIKTPLTLISAPLQELV--KHPTDDTFIISRLQIIQQSTNRLSNLINQ 532

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            LDL  +D   + L+     +  L   + +S      +  I  +  SD        DR +
Sbjct: 533 FLDLRKIDKEALPLSIQETNIAHLFEAILESFRPLAEQKGINFQYFSDSSEIQGWIDRDK 592

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           + +I + +LSNA+ F+ KG  + +  A++     F+V++NG  I E     +F+RF    
Sbjct: 593 VSKILNNLLSNAIKFTQKGHQITVFIAKEEDHIFFTVEDNGCGISEQDLPHIFDRFYQ-C 651

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              Q  G G+GLS+V   I LH G +S++S+ E  TT N  IP  +
Sbjct: 652 GTQQSSGTGIGLSLVYELIQLHHGKISVTSTIEVGTTFNVSIPITQ 697


>gi|39656353|gb|AAR29899.1| putative histidine kinase NIK1p [Cochliobolus heterostrophus]
          Length = 1239

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 156/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 574 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 633

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 634 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 689

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 690 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 749

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 750 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 806

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 807 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 866

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 867 LVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 926

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 927 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 969


>gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1311

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 3/246 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            S RA     ++ EAL K D+ K +F  ++S+E R+PLT ++G  +         L  +Q
Sbjct: 332 QSARAFEEEKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQDTGEPLPPRQ 391

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
                 +  +   LL LVN +LD + ++AG +K  Y    L+    ++  +  + M +  
Sbjct: 392 RDRQLMVHRNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLASAFRSLMEKAG 451

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + ++V           DR+   ++   +LSNA  F+  G  V +    +    + +V ++
Sbjct: 452 LSLQVDCPWLAAPVYVDREMYEKVVLNLLSNAFKFTFVGG-VRVSLRAEADRAVLTVADS 510

Query: 727 GSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G+ IPE     VF RF  V  A      G G+GL++++  + LHGG +S+ S+    +  
Sbjct: 511 GTGIPEAELPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLSVESAVGQGSRF 570

Query: 785 NCRIPS 790
              +P 
Sbjct: 571 TVTLPL 576



 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 146/393 (37%), Gaps = 35/393 (8%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +   E       ++  + +        V GP    +L+NP +  L   +   L+ G  +
Sbjct: 760  ARARSEAAL-AQERLHAQFMQAPIAMSVVRGPRFVYELANPLYLELLGRQGQALT-GKSV 817

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQ 537
            R                +        F  E   +   +       D   +++  P+  A 
Sbjct: 818  REALPELPEDAPVLKMLEDVFTQGKPFMAEEYCVPLDRKGTGQPEDVYFKFTCQPVRGAD 877

Query: 538  TMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
              +T +     +VT+ V A R      E L+ AD+ K+ F+  +++ELR+P+  I     
Sbjct: 878  GQVTDIITVAVDVTEQVLARRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALS 937

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            +L+ S+     +K +++ E        L+ LV+D+LD++ +  G M+L   T+ L  L+ 
Sbjct: 938  MLERSEGD--TAKLARHRETARRQMGNLVRLVDDLLDVSRITRGKMELRKETVDLAVLVQ 995

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                     +      + V          AD  RL Q+   +L+NA  ++  G  + +  
Sbjct: 996  NALAVTRPLIEARGHTLSVALIPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSL 1055

Query: 713  ARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR----------GVGLGL 758
            +R+        +  VK+ G  IP DM   VF  FV  A    R                 
Sbjct: 1056 SREGLNGTRQAVLRVKDTGRGIPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTL------ 1109

Query: 759  SIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
              V+  + +HGGH    S      +    R+P 
Sbjct: 1110 --VKRLVEMHGGHAEAFSQGPGQGSEFTVRLPL 1140


>gi|269839401|ref|YP_003324093.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791131|gb|ACZ43271.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 709

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 162/397 (40%), Gaps = 29/397 (7%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETID--------------HLSEGVAVFGPD-GRIKLSN- 460
             L  +   E +     + + + ++              HL  GV +     G++ ++N 
Sbjct: 309 RELEERARAERELARAAERERQALEESEARRDLLETVLRHLPVGVLIIDARAGQVVVANE 368

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A   L     +     + +  +  +        D W +  ++      + + L+     
Sbjct: 369 RAVEILGPQSRSGSIYQSELGYVLRSEEGQELSMDQWPVHRSLWAGEAVQGEVLELERPD 428

Query: 521 LSDSVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                L+ S +P+ + +  +        ++T   + E+  +E    +  A E++N F+  
Sbjct: 429 GERRHLQVSSVPIRDHRGQIVAAVALVDDITQQRQLEQQRSELLRQIESALELRNQFIAT 488

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            S+EL++P+T + G+  +L       +     + +E I+     +  L+ND+LD++ ++A
Sbjct: 489 ASHELKTPITLLKGYAQVLMDRSREGV---LRRPLEIINRQVDRMSELINDLLDVSKIEA 545

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++L    + L D + EV            I +      +    + DR RL Q+ +  +
Sbjct: 546 GKLELVLRKVELTDAVREVVMDQREAASGFEIEL---LAAEPVWVLGDRNRLQQVVANFI 602

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRG 753
           SNA+ +S     VI++  RD  +   SV + G  IPED    VF  +            G
Sbjct: 603 SNAVKYSGNSRRVIVEVRRDGPEVEVSVTDYGIGIPEDQQPEVFGLYFRGRNVSPRHYSG 662

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +GLGL I  + +  HGG + +SS +   +    R+P+
Sbjct: 663 LGLGLYICRNIVERHGGRIGMSSREGEGSRFWFRLPA 699



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 16/148 (10%)

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI--DLAFLATNPSN-DELLEFLRSANKL 365
            E+L ++   + +      + + N    ++          +T+P   D + E   +    
Sbjct: 7   QEVLDHIQDGVTVQASTGEIVYANDRAAQILGFASPTHLQSTHPDEIDRMFEVFDAETGA 66

Query: 366 PEQLNWKTWKENIFS--------VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                   W+  + +         Y+S  TH++ W     + + +   +      I +F 
Sbjct: 67  AIDPAVSPWRRALTAGEPCSYKLRYRSRATHEERWATL--RCVPLRGDAGDVEAVIHIFR 124

Query: 418 NLTVQVDLETKYNTLVK---VQGETIDH 442
           ++T +   E     LV+   + G ++D+
Sbjct: 125 DITAEHRREVNSRFLVQASLMLGSSLDY 152


>gi|254414213|ref|ZP_05027980.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178888|gb|EDX73885.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 531

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 155/394 (39%), Gaps = 32/394 (8%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E       +     ++++ E +    P+G  +  +PA+  L        + GT      
Sbjct: 144 AEKALRRSEQQYRSVVENVKEVIFQIDPNGNWEFLSPAWTKLMGFTLEE-TLGTPFLECV 202

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERK--------------------------SLQGTL 518
                   +     +       F  E +                           L G L
Sbjct: 203 HPDDCQLQKELWQSILTGANVGFQREIRYVTKTGATRWLEIHAHASQVTNGKFTGLSGIL 262

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             +++ +   ++      + +     + +  R+E  + +  E  ++  E+K+  +  +S+
Sbjct: 263 HDITERIYAAAL----EKEKIRLETEIIERQRSETMIRQALEKEKELGELKSHIITTISH 318

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E R+PLT I   ++LLK         K+ ++ + I      +  L+ND++ +   +AG M
Sbjct: 319 EFRTPLTTIQSSSELLKLYDKKLTEDKKLKHFQKIGLCVEHITQLLNDVILIGQSEAGQM 378

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           K N  ++ + DL +++ +   + +      +KV         + D   L +  + +LSNA
Sbjct: 379 KFNPISLEVADLCHDLIEEFQSNLDPR-YTLKVFIAESPIKGLFDEAMLRKSLNHLLSNA 437

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           + +S KG T+  +    +      +++ G  IP      +F  F   ++     G GLGL
Sbjct: 438 VKYSPKGGTITFQLGCHSDKVTVQIQDEGIGIPSIDQSRLFESFYRGSNISTIGGTGLGL 497

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +IV+ +++LHGG + I S     TT+   +P  +
Sbjct: 498 AIVKKYVDLHGGQIQIESEVGIGTTVTVTLPINQ 531



 Score = 37.6 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 52/153 (33%), Gaps = 17/153 (11%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
            E  +         ++ N+   I   D N   +F + ++ +L    L      P      
Sbjct: 144 AEKALRRSEQQYRSVVENVKEVIFQIDPNGNWEFLSPAWTKLMGFTLEETLGTP------ 197

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPR------ 409
            FL   +    QL  + W+  +     +    ++  ++   G T  + + ++        
Sbjct: 198 -FLECVHPDDCQLQKELWQSILTGA--NVGFQREIRYVTKTGATRWLEIHAHASQVTNGK 254

Query: 410 -GGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
             G   +  ++T ++         ++++ E I+
Sbjct: 255 FTGLSGILHDITERIYAAALEKEKIRLETEIIE 287


>gi|219847489|ref|YP_002461922.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541748|gb|ACL23486.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 527

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 140/350 (40%), Gaps = 24/350 (6%)

Query: 450 FGPDGRIKLS-NPAFRSLWKTEEN---RLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
               GRI  + NPA   +   +E     L  G+ +R I               L    +T
Sbjct: 192 LDEQGRILFNPNPAALPMPAHQEALAAALRNGSDLRTITTINGERVR------LLTYRLT 245

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRK 564
             D       G +    + VL   +  L     +    + +     A RAL    EA  +
Sbjct: 246 RSDGPAALQLGRVLNDQEQVLYQLLTGLVGFGIVGAVMIGIASWWLAGRALRPAEEAWTR 305

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
                  F+   S+ELR+PLT I    ++   +     +  Q + +  + + S  +  LV
Sbjct: 306 QLR----FISSASHELRAPLTLIRASAEVALRNAK---DEDQRELLTDVLSESDHMRRLV 358

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +D+L L+ +D+G + L    I LND L ++ + ++    E  I I +      G+ +AD 
Sbjct: 359 DDLLTLSRLDSGSLTLQRQPITLNDFLADLHRHVSRLGEERGITITL--AQARGTVIADP 416

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL QI   ++ NA+ ++  G T+ L A         SV++ G  I  +    +F RF  
Sbjct: 417 DRLRQILLILIDNALRYTPTGGTITLNAELAGKQVRISVRDTGCGITPEHLPHLFERFYR 476

Query: 745 NAHRGQRRG----VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 R       GLGLSI +  +  HGG + I S     T +   IP+
Sbjct: 477 ADQARNRSSNTNNAGLGLSIAKGLVEAHGGTIGIESEVNKGTLVWFTIPT 526


>gi|120611753|ref|YP_971431.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
 gi|120590217|gb|ABM33657.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
          Length = 595

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 6/247 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
               +   AL       R A+  K+ F+  +S+ELR+PLT+I GF +L++          
Sbjct: 343 HQLEQKNLALAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAELMEQRLEQPS--- 399

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +    I +++  L  L+++ILDLA V AG M +      + +L+       A    + 
Sbjct: 400 YREAAGLIRSAAEHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELVGTTVDLFAISAVQK 459

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            + +++     +   +  D  RL QI + +LSNA+ F+ +G   +     D     F V 
Sbjct: 460 GLTLEMHIAPGVPQVLRCDGLRLKQILNNLLSNALKFTREGGVRLETDTADGHSVRFRVT 519

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP D+ + +F +F   +     Q  G GLGL++      L GG ++++S      
Sbjct: 520 DTGPGIPADLHEVIFEKFSQGSADVSTQHGGTGLGLALSRGLAELMGGRLTVASEPGQGA 579

Query: 783 TINCRIP 789
                +P
Sbjct: 580 CFTLELP 586


>gi|4545094|gb|AAD22391.1|AF064527_1 PPH [Rhodospirillum centenum]
          Length = 884

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 131/260 (50%), Gaps = 7/260 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
            A  + T +    S    R L    E    L  ++E K+ F+ ++S+ELR+PL  IIGF+
Sbjct: 624 WADEIATSLRHAISDMMLRHLRHVKELSDQLAASNEAKSRFLANMSHELRTPLNAIIGFS 683

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNL-VNDILDLATVDAGIMKLNYSTIVLNDL 650
           DL+ +   G+L  +   YV+ I AS   LL + VND+LDL+ ++AG M+L+  ++    L
Sbjct: 684 DLMMSGMAGTLPPRIQDYVQSIHASGEHLLRMVVNDVLDLSRIEAGRMELSPESLDAGIL 743

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             E    +  +     + ++V ++  L    AD  RL QI   I+ NA+ F+  G  V +
Sbjct: 744 AAECVGMLLPRAVRGEVLLEVQAESPLP-LTADALRLRQILLNIIGNAVKFTPPGGRVDV 802

Query: 711 KAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLH 768
           +A     G  +F+V++ G  +  +   +    F   A       G GLGL I +S ++LH
Sbjct: 803 RARALAGGGAVFTVRDTGPGMTPEEVLTAMEPFRQVAQTRAAVEGTGLGLPIAKSLVDLH 862

Query: 769 GGHVSISSSDEGVTTINCRI 788
            G+++I ++    TT+   I
Sbjct: 863 AGNLAIETAPGLGTTVTIEI 882


>gi|323137189|ref|ZP_08072268.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397547|gb|EFY00070.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 814

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 107/491 (21%), Positives = 196/491 (39%), Gaps = 42/491 (8%)

Query: 339 WEIDLAFLATNPSNDELLEFLR-SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           W   +  +   P+    L F   +A   PE  +     E + +    S  H+      +G
Sbjct: 264 WSDSMYEMLGLPAERRCLSFGELNALIHPEDGDLTVIAEMVSASRTKSVDHEFRAKHADG 323

Query: 398 QTLHVIVTS-------NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           + + V   +       +P    + +  +++ Q  L     T      + ID +SE   ++
Sbjct: 324 RWIWVRARAQLVDEANDPGKHLVGIAVDVSEQRALAEHTATANMRLRDAIDAISEAFVLW 383

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSRYYNESDGWDLFAAIITSFD 508
               R+   N  F  L     +    G     I   AT      E    +  AA   +++
Sbjct: 384 DAQNRLVTCNSKFLDLHGLSADAAIAGATYAQIMMRATAPLIQTEISSAEQRAADARTYE 443

Query: 509 -----------DERKSLQGTLE----------------LLSDSVLEYSIIPLPNAQTMLT 541
                      +ER++  G                   L S+  L  S+  L  ++  L 
Sbjct: 444 ARLADGRWLQINERRTKDGGYVSVGADITALKRNEEKLLESERRLTASVTDLTRSRQTLE 503

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                 +  AE+   +K EA       K+ F+ ++S+ELR+PL  IIGF+++++    GS
Sbjct: 504 MQAQQLATLAEQYHHQKAEAEAAYL-AKSEFLANMSHELRTPLNAIIGFSEMMQAEPFGS 562

Query: 602 L-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           L + K  +Y   I      L  +++DILD++ ++AG+++L    + + D       S  +
Sbjct: 563 LGSPKYVEYCNNIRQGGAYLNEVLSDILDMSRLEAGLVRLAEREVNVADATRRAIASWRS 622

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    NI+I   +D +L   + D   +++    +LSN++ F+  G  + L+A R      
Sbjct: 623 RADAKNIQIVAEADDRL-RCIGDESAIVKALGVLLSNSIKFTDAGGFIRLRARRHGAAIA 681

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++ G  I       +   F  +A       +G GLGL+I  + ++LHGG + I S  
Sbjct: 682 IFVEDTGRGIDPRAISRLGRPFEQSADLMENGMKGSGLGLAIARALVDLHGGALRIRSRL 741

Query: 779 EGVTTINCRIP 789
              T    R+P
Sbjct: 742 GLGTIAMMRLP 752



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 25/249 (10%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS---SALEKNFCETVS 267
             G I W++  Y +           + GE   L   E     + +   SA      +   
Sbjct: 258 ARGRIYWSDSMY-EMLGLPAERRCLSFGELNALIHPEDGDLTVIAEMVSASRTKSVDHEF 316

Query: 268 TLEHGNNKSYKIVRVLNSFGEA--------GIAIDVSKEITVNDQLT----HTYEILHNL 315
             +H + +   +        EA        GIA+DVS++  + +          + +  +
Sbjct: 317 RAKHADGRWIWVRARAQLVDEANDPGKHLVGIAVDVSEQRALAEHTATANMRLRDAIDAI 376

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           + A  ++D    L   N  F++L  +         +  +++    +     E  + +   
Sbjct: 377 SEAFVLWDAQNRLVTCNSKFLDLHGLSADAAIAGATYAQIMMRATAPLIQTEISSAEQ-- 434

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
                  ++++       L +G+ L +       GG + +  ++T     E K     + 
Sbjct: 435 -------RAADARTYEARLADGRWLQINERRTKDGGYVSVGADITALKRNEEKLLESERR 487

Query: 436 QGETIDHLS 444
              ++  L+
Sbjct: 488 LTASVTDLT 496



 Score = 42.2 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 87/304 (28%), Gaps = 35/304 (11%)

Query: 25  AVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTI 84
            +F     MLL  +       R+R ++                   +  + L+   C   
Sbjct: 204 LLFAFTTLMLLVIVYGYFRQTRRRQAVEHVNALIR----------KRLETALSRGRCGLW 253

Query: 85  VWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLS-KATEKLRKEGQSFDL 143
            WD           +++ + +P  +   LSF       H          ++    ++  +
Sbjct: 254 DWDIARGRIYWSDSMYEMLGLP-AERRCLSFGELNALIHPEDGDLTVIAEMVSASRTKSV 312

Query: 144 VAETQNDCAIKIEGRVSGSCAFLRILS--------LDGIYSELAETTLKCKKLSNHISVF 195
             E +       +GR     A  +++         L GI  +++E     +  +      
Sbjct: 313 DHEFRAK---HADGRWIWVRARAQLVDEANDPGKHLVGIAVDVSEQRALAEHTATANMRL 369

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYKKN------TETEGIVFQKAIGESRKLFKEEIK 249
           +   D++       D    ++  N  +             G  + + +  +     +   
Sbjct: 370 RDAIDAISEAFVLWDAQNRLVTCNSKFLDLHGLSADAAIAGATYAQIMMRATAPLIQTEI 429

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKI-VRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
                 +A  + +   +      + +  +I  R     G   +  D++      ++L  +
Sbjct: 430 SSAEQRAADARTYEARL-----ADGRWLQINERRTKDGGYVSVGADITALKRNEEKLLES 484

Query: 309 YEIL 312
              L
Sbjct: 485 ERRL 488


>gi|313677456|ref|YP_004055452.1| integral membrane sensor signal transduction histidine kinase
           [Marivirga tractuosa DSM 4126]
 gi|312944154|gb|ADR23344.1| integral membrane sensor signal transduction histidine kinase
           [Marivirga tractuosa DSM 4126]
          Length = 359

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 124/240 (51%), Gaps = 4/240 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            ++ + L++    +  F+  VS+EL++P+    GF   L    +      + ++++  + 
Sbjct: 107 QQEIDELKRMATYRREFLADVSHELKTPIFAAQGFVYTLIDGAVKD-KKVRGKFLKKAAK 165

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S   L  LVND+L L+ ++AG + +++  I L  L+ +V      K  + N+ +++    
Sbjct: 166 SLDGLEMLVNDLLTLSHIEAGEITMHFEEIDLLALVEDVFDQFEGKTDKKNMSLQLDKSY 225

Query: 676 K-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           +   + +AD QR+ Q+   ++SNA+ +S + + +++    +  +   +++++G+ I  + 
Sbjct: 226 EGPINVIADYQRIYQVIVNLISNAIKYSDENTEIVVGFEINQKEVTIAIQDHGAGISPEH 285

Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            K +F RF          R G GLGL+IV+  I  HG  VS++S+    +  + ++P ++
Sbjct: 286 IKRIFERFYRIDKSRSKERGGTGLGLAIVKHIIEAHGSSVSVTSTVGKGSLFSFKLPVEK 345


>gi|84623384|ref|YP_450756.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
 gi|84367324|dbj|BAE68482.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            oryzae pv. oryzae MAFF 311018]
          Length = 1216

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 12/247 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+  Q  Y 
Sbjct: 828  AWQLAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYT 884

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  +   LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R  
Sbjct: 885  ESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS 944

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
            +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 945  LEI-GLLGDITASGDSTRIRQILLNLLNNAIKFTERG-VVGLKLTTLGSYQGLRFEVADT 1002

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F RF             G GLGL+I +      GGH+ + S     T 
Sbjct: 1003 GPGINAEQKARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTR 1062

Query: 784  INCRIPS 790
                +P 
Sbjct: 1063 FVVDLPL 1069


>gi|186681707|ref|YP_001864903.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
 gi|186464159|gb|ACC79960.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
          Length = 709

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 120/244 (49%), Gaps = 7/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L    +  + A++IK+ F+   S+ELR+PL  II    +++     S   +  ++++ 
Sbjct: 369 EELEIAWKEAKNANQIKSQFLATTSHELRNPLHTIINCIRVVEDGLCDSREEEM-EFLKR 427

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            + ++  LLN++ND+LD++ ++AG + +  + + L  +L EV    +  + +  +++K  
Sbjct: 428 ANETTIHLLNIINDLLDISKIEAGKLSVVITPLDLRQILLEVINLQSVNVQQKGLQLKCE 487

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSVKNNGSS 729
            D +     AD  +L Q+   ++ NA  F+  GS  I   ++++      +  V + G  
Sbjct: 488 LDPQPIPIKADAAKLKQVLINVIGNATKFTDTGSITIATEIQSSNGKSQVVVIVTDTGIG 547

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINC 786
           I  +    +F  F  V+     Q  G GLGL+I  + I L GG +++ S+     TT+  
Sbjct: 548 IDPNQQHKLFRPFVMVNGTTTRQFEGTGLGLAISRNLIELMGGSITLESTGLHQGTTLKI 607

Query: 787 RIPS 790
            +P 
Sbjct: 608 TLPL 611


>gi|238062161|ref|ZP_04606870.1| GAF sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149]
 gi|237883972|gb|EEP72800.1| GAF sensor hybrid histidine kinase [Micromonospora sp. ATCC 39149]
          Length = 1455

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 148/344 (43%), Gaps = 20/344 (5%)

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            F S+    E  L+    +             +   +   A       E +     L+  +
Sbjct: 941  FASVAAFPELHLTFLERLVLTIGVAVNTIQANRRTEELLAQSQRLAHELQEQSAELQRTN 1000

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              + + +   L + Q         +   A   L +K + L +A   K+ F+ ++S+ELR+
Sbjct: 1001 AELEDKA--QLLSEQKANIETQNREIELARLGLEDKAQQLTRASAYKSEFLANMSHELRT 1058

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL +++    LL  +   +L  KQ ++   I  S + LL L++DILDL+ ++AG M +  
Sbjct: 1059 PLNSLLLLARLLAENSEQNLTPKQIEFARTIHGSGSDLLRLIDDILDLSKIEAGRMDVEP 1118

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDF 701
            + +   ++   V+Q+ A +  E  +  +V+   +L    V D QRL QI   +LSNA+ F
Sbjct: 1119 TEVQFAEIRGYVEQAFAPQAEEKGLDFQVLLAKELPPALVTDAQRLQQILRNLLSNAVKF 1178

Query: 702  SSKGSTVILKAARDNGDFI--------------FSVKNNGSSIPEDMCKSVFNRFVSNA- 746
            +  G+ V L+ A    + +              F+V + G  I +D    +F  F     
Sbjct: 1179 TDSGA-VTLRIAPAPENVVFDVPALINARQVIAFTVIDTGIGISDDKLSLIFEAFQQADG 1237

Query: 747  -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +  G GLGLSI      L GG +++SS+    +T    +P
Sbjct: 1238 TTSRRYGGTGLGLSISRDLARLLGGSITVSSAPGEGSTFTLYVP 1281


>gi|229144617|ref|ZP_04273019.1| hypothetical protein bcere0012_17770 [Bacillus cereus BDRD-ST24]
 gi|228638857|gb|EEK95285.1| hypothetical protein bcere0012_17770 [Bacillus cereus BDRD-ST24]
          Length = 443

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 5/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       +  Q +  
Sbjct: 211 HSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEIKQGMGI 269

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  I+    
Sbjct: 270 ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITT 329

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I +
Sbjct: 330 IDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAK 387

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  ++P 
Sbjct: 388 EHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLPL 443


>gi|254513206|ref|ZP_05125271.1| sensory box histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
 gi|221532210|gb|EEE35206.1| sensory box histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
          Length = 820

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 160/378 (42%), Gaps = 19/378 (5%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT--------EENRLSP 476
           L  +  +        I    + V V    GRI   N A   ++          +   L  
Sbjct: 203 LARQSQSASNRFEAAITSSLDAVLVVDTSGRILEFNGAAEDVFGYTQAEAIGADMADLIV 262

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
             H+R++       + E+    +  A     +  RKS +     LS S+ E +   +   
Sbjct: 263 PEHLRDLHRKGMARFLETGEQKVIGAGRVRLEGLRKSQETFPVELSISLAETNGERV--- 319

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    ++T+ ++AE  L    +  +++++ K+  +  +S+E+R+PL  I+G  +L+  
Sbjct: 320 -FVSFLRDITEDLKAEEDLRTARDKAQESEQAKSDLLTVMSHEMRTPLNGILGSAELIDR 378

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           S   +L  +Q +++  I  S  +LL+ V D+LD + + +G    + S   +  ++ EV  
Sbjct: 379 S---NLTDRQKRHLHSIEVSGKLLLSHVTDVLDFSRLGSGNALRDKSNFDICKVVREVAD 435

Query: 657 SIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAAR 714
           S+          +KV     +L   +  R  L Q    +L NA++F+  GS T+ ++  R
Sbjct: 436 SLTANADARGNDLKVDVLSEELCEVLGYRTALQQCLVNLLGNAIEFTRDGSVTIEVERLR 495

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHV 772
            N    F + + G  I  +    +F+ FV+        + G GLGL+I +      GG +
Sbjct: 496 HNDLVEFRIADTGVGISPEYLDVIFDEFVTIDTAFARDKSGTGLGLAITKRLAEAMGGDI 555

Query: 773 SISSSDEGVTTINCRIPS 790
           S  S     +  + R+P 
Sbjct: 556 SADSVLGEGSLFSMRLPL 573


>gi|332560655|ref|ZP_08414973.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
 gi|332274453|gb|EGJ19769.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
          Length = 816

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 151/354 (42%), Gaps = 23/354 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             + ++  V +    GRI+  N A   L+  +    S            +  + +  G+D
Sbjct: 198 IFESMNNPVLLVDDGGRIENMNFAAARLFLQDALPGSVYY-----GPEANLRFADLAGFD 252

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQTMLTFVNVTDSVRAERALT 556
           L A  +      R      L  + +     +   + +   + +   V   D   A RA  
Sbjct: 253 LEAVKL------RGEAGDVLTCIGERWYSITAQEMLDVSRKFVGIVVTFHDVTEARRA-- 304

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              E        K  F+  +S+E+R+P+ +I G T+LLK S+L S +     YV+ I  S
Sbjct: 305 --REQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSELASRD---RGYVDAIERS 359

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           + +L ++V+D+LD A +++G+++L      ++ +L++V + +   +        VI    
Sbjct: 360 TEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMMQPLVRRKPQLRIVIERTD 419

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMC 735
           L   + D  +L QI   + SNA+ F+ +G+ VI       G  F F+V + G  I  +  
Sbjct: 420 LPPVLGDAGKLRQILINLTSNAVKFTPEGTVVIGAERLAGGHRFRFTVSDTGPGIAAEKL 479

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +F  ++ +     RR  G GLGL+I        GG + + S+    +     
Sbjct: 480 EEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLDVRSTPGFGSRFTLE 533



 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 49/149 (32%), Gaps = 8/149 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + ++      I  ++   + + D    ++  N +   L+  D    +     +  L F
Sbjct: 186 RALVNEKNKYLTIFESMNNPVLLVDDGGRIENMNFAAARLFLQDALPGSVYYGPEANLRF 245

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
              A    E +  +    ++ +         + W+  +     ++  S    G +  F +
Sbjct: 246 ADLAGFDLEAVKLRGEAGDVLTCI------GERWY--SITAQEMLDVSRKFVGIVVTFHD 297

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +T       +   L + + + +  +S  +
Sbjct: 298 VTEARRAREQAEALARAKTDFLATMSHEI 326


>gi|296161585|ref|ZP_06844390.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295888229|gb|EFG68042.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1490

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/514 (18%), Positives = 191/514 (37%), Gaps = 38/514 (7%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND---- 353
            E+ +  QL     ++  +   +   D +      N ++ +   +    +    + D    
Sbjct: 570  ELELELQLNFQETMMKMVPYPLVAMDLDGRYIAVNEAYEQACGMSREAVIGRNTMDVQTW 629

Query: 354  ------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                   L +  R      E    +   E      +            +GQ + V+ T  
Sbjct: 630  GEANSRILTDMTREMLNGRETAQLELQFERGAGNVRHGLFWASVCRGSDGQPVCVLGT-- 687

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP--DG--RIKLSNPAF 463
                      ++T     E +     +   +    L   V       DG           
Sbjct: 688  --------VVDITDIRRAEMRARETERRLFDVTRSLPAVVFQLRRTSDGAYSFPYIGGDT 739

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
            R L   ++  LS   H+ +    C             +A+  +  +     +G  E+   
Sbjct: 740  RHLLGGKDGSLSSSDHV-DFQRVCEEDRAFVLAELERSALCETPVNMEFRFEGDQEIKWA 798

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELR 581
               E      P+   + +   V  SV   R   L    +    A   K+ F   +S+E+R
Sbjct: 799  RA-ELVPRREPDGSVVWSGYWVDASVEHARSDELARARDLAEAAARAKDDFFAMMSHEIR 857

Query: 582  SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
            +P+  ++G  ++L+ +    LN+ Q + +  I  S+  LL +++D+LD + ++AG + + 
Sbjct: 858  TPMNGVLGLVEVLERT---PLNTDQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIE 914

Query: 642  YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMD 700
              +I + +L++     +A + HE  ++++V     +  +   D  RL QI   +L NA+ 
Sbjct: 915  AESIDIRELVDNAVGLLAGRAHEKGLKVRVDIAPDVAAALRGDSVRLRQILFNLLGNAIK 974

Query: 701  FSSKGST-VILKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
            F+ +G   V +    +  D      +V++ G  I  ++   +F  FV       RR  G 
Sbjct: 975  FTPQGEVDVRVSVFAEADDVQTLEMTVEDTGIGIAPEVQNRLFEPFVQAESSTTRRFGGT 1034

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL+I    I+L GG +++ S     T +  ++
Sbjct: 1035 GLGLTICRKLIDLMGGSLALHSEPGRGTRMIVQL 1068



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 61/178 (34%), Gaps = 27/178 (15%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            G    + + +   +  E+        +L   ++  + +   + + +   D  G  +  N
Sbjct: 545 IGVALLITLRAYLLLQREVRLRKKTELELELQLNFQETMMKMVPYPLVAMDLDGRYIAVN 604

Query: 220 ISYKKNTETEGIVFQKAIGESR-----------KLFKEEIKKRM--ISSSALEKNFCETV 266
            +Y++     G+  +  IG +            ++  +  ++ +    ++ LE  F    
Sbjct: 605 EAYEQAC---GMSREAVIGRNTMDVQTWGEANSRILTDMTREMLNGRETAQLELQFERGA 661

Query: 267 STLEHGNNKSYKIVRVLNSFGE----AGIAIDVS----KEITVNDQLTHTYEILHNLT 316
             + HG    +       S G+     G  +D++     E+   +     +++  +L 
Sbjct: 662 GNVRHG---LFWASVCRGSDGQPVCVLGTVVDITDIRRAEMRARETERRLFDVTRSLP 716


>gi|290580114|ref|YP_003484506.1| putative histidine kinase [Streptococcus mutans NN2025]
 gi|254997013|dbj|BAH87614.1| putative histidine kinase [Streptococcus mutans NN2025]
          Length = 450

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 136/383 (35%), Gaps = 32/383 (8%)

Query: 417 ENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRL 474
            +L+    L               + ++++GV      G+I + N  A + L  T E  L
Sbjct: 76  NDLSEVFRLTHENLAQEKNRLTSILSYMTDGVLATDRRGKITVINDMAQKQLNVTREQAL 135

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               +I +I    S  YN     DL           R      + L     L        
Sbjct: 136 EC--NILDILDDDSYTYN-----DLITKTPEIVLTRRDEYDEFITLRIRFALNRRESGFI 188

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +                  A+        K +  +  FV +VS+ELR+PLT++  + + L
Sbjct: 189 SGLI---------------AVLHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEAL 233

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    S    +++     +  ++ ++ D+L L+ +D     L+         +N +
Sbjct: 234 DDGAL--TESVAPSFIKVSLDETNRMMRMITDLLSLSRIDNQTSHLDVELTNFTAFMNYI 291

Query: 655 KQSI----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
                   + +       I      K      D  ++ Q+   IL+NA+ +S  G  V +
Sbjct: 292 LDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKVTV 351

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
                +   I S+ + G  IP+     +F+RF          + G GLGL+I +  +  H
Sbjct: 352 TMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQH 411

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G +  +S +   +T    +P +
Sbjct: 412 KGFIWANSEEGEGSTFTIVLPYE 434


>gi|253730990|ref|ZP_04865155.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725273|gb|EES94002.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 549

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 190 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 247

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 248 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 300

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 301 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 334

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 335 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 393

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 394 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 452

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 453 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 512

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 513 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 549


>gi|32474805|ref|NP_867799.1| histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
 gi|32445345|emb|CAD75346.1| putative histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
          Length = 445

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 161/397 (40%), Gaps = 32/397 (8%)

Query: 405 TSNPRGGTIWMFENLTVQVDLETK----YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           +S           + T ++    +     +   +     +  LS+GV V   D  + L N
Sbjct: 64  SSQQDDAVSAYVRDSTEEIQKWQERLRCLHAETRQNASALLQLSDGVIVLAKDFSVLLIN 123

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           P+   L   ++             A   R + E        A I S   E++  + T+E+
Sbjct: 124 PSAVRLLGLKKRD-----------ALLGRCFTELVRVPQLLASIRSAVREQQPQEFTVEV 172

Query: 521 LSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               V   L   +  +   +     +++ D   A R            +E++  F+ +VS
Sbjct: 173 HDQGVMRPLRVRVDLIDTGEEPNLQLSLRDETEARR-----------VEEMRREFIANVS 221

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++PL  I G+ + ++ +     ++    +++ I +    L  LV++++ LA   AG 
Sbjct: 222 HELKTPLAAIKGYAETVELAVQDDPDA-ALHFMQQIMSQCLRLERLVHEMMQLARAQAGP 280

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             L+ S++ L++++++  ++       N + +           +ADR+  L I + ++ N
Sbjct: 281 ANLHLSSVSLSEIVSDAIRTYEPVAAANGLDLIQEVPSGEAKIIADREATLTIANNLIGN 340

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
           A+ ++  G  + +        +   V++ G  IP    + +F RF   +        G G
Sbjct: 341 ALRYTPSGGEIRVSIVEQTDQWALVVEDTGVGIPYSEQQRIFERFYRGSRNEESSTSGTG 400

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+IV+       G VS++S+    +     +P+ +
Sbjct: 401 LGLAIVKHLTQAQQGDVSVTSTPGEGSRFCVCLPAVQ 437


>gi|22124046|ref|NP_667469.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           KIM 10]
 gi|45443540|ref|NP_995079.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597792|ref|YP_071983.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809739|ref|YP_653655.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Antiqua]
 gi|108813597|ref|YP_649364.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Nepal516]
 gi|145597658|ref|YP_001161734.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Pestoides F]
 gi|153950296|ref|YP_001399462.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997330|ref|ZP_02022430.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CA88-4125]
 gi|165928121|ref|ZP_02223953.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937545|ref|ZP_02226108.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166011304|ref|ZP_02232202.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166211955|ref|ZP_02237990.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400505|ref|ZP_02306014.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420652|ref|ZP_02312405.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426990|ref|ZP_02318743.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|186896982|ref|YP_001874094.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930567|ref|YP_002348442.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           CO92]
 gi|229837086|ref|ZP_04457251.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Pestoides A]
 gi|229839211|ref|ZP_04459370.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229899775|ref|ZP_04514916.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904091|ref|ZP_04519202.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Nepal516]
 gi|294505322|ref|YP_003569384.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Z176003]
 gi|21956791|gb|AAM83720.1|AE013612_13 aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase [Yersinia pestis KIM 10]
 gi|45438409|gb|AAS63956.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51591074|emb|CAH22738.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pseudotuberculosis IP 32953]
 gi|108777245|gb|ABG19764.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Nepal516]
 gi|108781652|gb|ABG15710.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Antiqua]
 gi|115349178|emb|CAL22143.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CO92]
 gi|145209354|gb|ABP38761.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Pestoides
           F]
 gi|149288967|gb|EDM39047.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CA88-4125]
 gi|152961791|gb|ABS49252.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 31758]
 gi|165914650|gb|EDR33264.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165919895|gb|EDR37196.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165989688|gb|EDR41989.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206701|gb|EDR51181.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166961458|gb|EDR57479.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167049873|gb|EDR61281.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054030|gb|EDR63858.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|186700008|gb|ACC90637.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678209|gb|EEO74314.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Nepal516]
 gi|229687267|gb|EEO79342.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695577|gb|EEO85624.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706029|gb|EEO92038.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Pestoides A]
 gi|262363385|gb|ACY60106.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis D106004]
 gi|262367237|gb|ACY63794.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis D182038]
 gi|294355781|gb|ADE66122.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Z176003]
 gi|320017096|gb|ADW00668.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 778

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 148/371 (39%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   +     + +++      
Sbjct: 313 LDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    +AD  RL QI   ++ NA+ F+ +G  V+      N   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +       G R   G G+GL++ +      GG +++ S+
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGVGSCFTLTI 503



 Score = 41.5 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|293606829|ref|ZP_06689180.1| sensor histidine kinase with CheB and CheR activity [Achromobacter
            piechaudii ATCC 43553]
 gi|292814833|gb|EFF73963.1| sensor histidine kinase with CheB and CheR activity [Achromobacter
            piechaudii ATCC 43553]
          Length = 1372

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/505 (18%), Positives = 186/505 (36%), Gaps = 23/505 (4%)

Query: 295  VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            V +   +ND L +   ++ +  +A    D+  ++Q+      +++ +      T+ +   
Sbjct: 741  VDETAKINDDLQN---LIASTDIATVFVDRKMHIQWFTPRATDVFNV-----ITSDAGRS 792

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            LL+     +      +     E++ +V +   +    W+L   + L      +   G + 
Sbjct: 793  LLDITHRLDYPDMARDAAGVFESLRAVEREVRSDAGRWYLA--RLLPYRSAEHRIEGAVL 850

Query: 415  MFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             F ++T +   E +            +   + G+     +G I   N    +++      
Sbjct: 851  TFIDITDRRQAEDQVRLGEAHLKLMTESARDFGILTLDSEGIITNWNVGAETMFGYNRTE 910

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSII 531
             + G     I           +     A  I    DER  +   G L   +  V   + +
Sbjct: 911  -AIGKSFSIIFTDADIEAGRPEKELERARQIGYAPDERWHRRKDGGLIFCTGGV---NRM 966

Query: 532  PLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              P+ Q       +VTD    +     + +  R  + +K+ F   VS+EL+ PL  I   
Sbjct: 967  DDPDYQGFAKIVRDVTDLKLRDAEQESRLDRARADNVLKDEFFAMVSHELKHPLNLIQLN 1026

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             +LL  +     +   ++  + I  S      +++D+LDL+ V  G + LN S   +  +
Sbjct: 1027 AELLARTPAVRNSPGAARSADLIQRSVKGQARIIDDLLDLSRVRTGKLALNQSIFDITAI 1086

Query: 651  LNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
               + + +        + ++   D G+     AD  R+ QI   +L+N + F+  G  V 
Sbjct: 1087 ATNILEVLDPVARAAGLTLRSEFDAGRAIHLNADPLRVEQIIWNLLNNGIKFTPPGGIVT 1146

Query: 710  LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFIN 766
            L+   ++      V + G  I       VF+ F     R +     G+G+GL++    + 
Sbjct: 1147 LRLEVEDARLRLDVVDTGQGIDAQFLGKVFDMFSQADLRQRNLASPGLGIGLAVASELVK 1206

Query: 767  LHGGHVSISSSD-EGVTTINCRIPS 790
             HGG +   S           R+P 
Sbjct: 1207 AHGGTIQAHSDGHGRGARFTVRMPL 1231


>gi|225376456|ref|ZP_03753677.1| hypothetical protein ROSEINA2194_02098 [Roseburia inulinivorans DSM
           16841]
 gi|225211832|gb|EEG94186.1| hypothetical protein ROSEINA2194_02098 [Roseburia inulinivorans DSM
           16841]
          Length = 470

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 4/240 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L      L   +E +  F+ +VS++ RSPLT+I G+ + +    +      Q +Y+  I 
Sbjct: 230 LNYMANELNTLEEDQRKFISNVSHDFRSPLTSIKGYVEAMLDGTIPV--EMQEKYLNIIL 287

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L   +L+L    +  + L+ +   +N  +     +        +IR  +I  
Sbjct: 288 FETERLNKLTKSLLELNKFGSHGVMLDVTDFDINQTIKTTLLTFEGICANKHIRFNLILS 347

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G+     AD  ++ Q+   ++ NA+ FS + ST+ ++    N     SVK+ G  IP+D 
Sbjct: 348 GEQLFVTADFSKIQQVLYNLIDNAIKFSHQDSTITIETTEKNDKVFVSVKDTGIGIPKDS 407

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            K ++ RF          +RG GLGLSIV+  I  HG +++  S++   T     +P  +
Sbjct: 408 LKKIWERFYKTDLSRGKDKRGTGLGLSIVKEIIQAHGENINCISTEGVGTEFIFTLPIAK 467


>gi|330964084|gb|EGH64344.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 1195

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 176/463 (38%), Gaps = 17/463 (3%)

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
                 +   +  ELL  L   NK  E+      +        SS      W        
Sbjct: 468 WSPDRFSVIKTQPELLGIL---NKALEEFPVAELRSIRLKWLGSSLPQPSLWGRIPPWVF 524

Query: 401 HVIVTSNPRGGTIWMFE-----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            V+  +   G     +       +  ++  E + N  +  +   +D +   + V    GR
Sbjct: 525 WVLALALLTGLVSLAWSSRLKVQIRQRLRAERQLNDQLAFKRALLDGIPNPIYVRDLKGR 584

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIR-NIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +   N ++         +++    +   +          +D   L       F D    L
Sbjct: 585 LISCNRSYEQSLGVSFEQMNGRRLLDVELIPRPLAEQMHADYLTLLENHQPVFSDRTIEL 644

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G    +    + +          +  ++++T+    E+ L E      +A+E K+ F+ 
Sbjct: 645 SGKRMDVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEEAVRLAAQANEAKSVFLA 704

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+E+R+P+  IIG  +L     L    +  SQ ++    S+T L+ L+ + LDLA ++
Sbjct: 705 SMSHEIRTPMGAIIGLLELECEHALRRGEAP-SQGLQVAHRSATELVALIGESLDLARIE 763

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSK 693
           AG M+L+     L      V    + +  +  + +++  ++   G +  D  RL Q+   
Sbjct: 764 AGGMQLSLVVTPLQTFFEGVLALFSAQARDKGLELRLELAEQARGDYWLDPLRLRQVVHN 823

Query: 694 ILSNAMDFSSKGSTVI-LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +L NA+ F+ +G+ V+ ++ + D+ D       + ++G  I     + +F  F   A   
Sbjct: 824 VLGNALKFTRQGAVVVKVEVSDDSPDSSRVRIGIMDSGVGIEPARQQQIFQPFTQAADDT 883

Query: 750 --QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                G GLGLSI    + L  G +S+ S     T +   +P 
Sbjct: 884 AAHYGGSGLGLSITRQLVELMKGDISLHSEPGTGTRVTIDVPL 926



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 10/168 (5%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            + +     +  ++ +     ++L++ ++  + L D +   ++ RD  G ++  N SY++
Sbjct: 535 LVSLAWSSRLKVQIRQRLRAERQLNDQLAFKRALLDGIPNPIYVRDLKGRLISCNRSYEQ 594

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISS----SALEKNFCETVSTLEHGNNKSYKIV 280
           +                +L    + ++M +         +      +    G        
Sbjct: 595 SLGVSFEQMNGRRLLDVELIPRPLAEQMHADYLTLLENHQPVFSDRTIELSGKRMDVWQW 654

Query: 281 RVLNSF------GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
            V          G  G  ID+++   +  QL     +      A ++F
Sbjct: 655 TVPFFAADGQLQGLLGGWIDITERKLLEQQLEEAVRLAAQANEAKSVF 702



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 13/149 (8%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--- 353
            E  +NDQL     +L  +   I + D    L   NRS+ +   +    +      D   
Sbjct: 554 AERQLNDQLAFKRALLDGIPNPIYVRDLKGRLISCNRSYEQSLGVSFEQMNGRRLLDVEL 613

Query: 354 ---ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
               L E + +      + +   + +    +   S    D W      T+          
Sbjct: 614 IPRPLAEQMHADYLTLLENHQPVFSDRTIEL---SGKRMDVWQW----TVPFFAADGQLQ 666

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGET 439
           G +  + ++T +  LE +    V++  + 
Sbjct: 667 GLLGGWIDITERKLLEQQLEEAVRLAAQA 695


>gi|296448200|ref|ZP_06890097.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
 gi|296254284|gb|EFH01414.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
          Length = 1142

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 3/244 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E AL +K   L +A   K+ F+ ++S+ELR+PL + +    LL  +K  +L ++Q +Y 
Sbjct: 470 TEVALRQKATELERASRYKSEFLANMSHELRTPLNSALILAKLLADNKSKNLTAEQVKYA 529

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + I+++   LL L++DILDL+ ++AG + L    I +  L N +++       E  + ++
Sbjct: 530 QSITSAGNDLLALIDDILDLSKIEAGKIDLELEPIPIIPLANALERRFEPLATERKLELR 589

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +I D +   +  AD QRL QI S +LSNA+ F+  G   +     D     F+V++ G  
Sbjct: 590 IIVDPRCPETIEADGQRLHQILSNLLSNAVKFTEAGRVRLTVEPHDERRLAFTVQDTGIG 649

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D  + +F  F        R   G GLGLSI   F  L GG + + S+    +     
Sbjct: 650 IAADQHEVIFQAFRQANGSTNRKFGGTGLGLSISREFAALLGGELRLRSAPGEGSAFTLL 709

Query: 788 IPSK 791
           +P +
Sbjct: 710 LPLR 713


>gi|217969772|ref|YP_002355006.1| histidine kinase [Thauera sp. MZ1T]
 gi|217507099|gb|ACK54110.1| histidine kinase [Thauera sp. MZ1T]
          Length = 596

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 132/318 (41%), Gaps = 16/318 (5%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           +I     R      G      +  +     +++ G++ +L ++VL            M  
Sbjct: 124 HILEADRRMALVVHGVQRGLTLEQARTQADETMSGSMRVLVETVLVMYDKLANRTMAMTR 183

Query: 542 FVNVTDSVRAE-----RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +N      AE      AL    E      E K+SF+  +S+E+R+PL  I+G + L+  
Sbjct: 184 EINRRRQAEAELQKAHEALKRAKENAESVSEAKSSFLASMSHEIRTPLAAILGMSHLMHQ 243

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   L + Q + ++ I  +   LL+++N ILDL+ ++AG   L+ + + L  ++ E   
Sbjct: 244 EE---LPASQRERLDVIENAGRHLLSIINGILDLSKIEAGKFTLDEAALDLRGVVEEAMA 300

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--- 713
            +A +     + ++   D   G+F+ D  RL Q     L NA+ F+ +G  + ++ +   
Sbjct: 301 MLAHQAEAKGLSLRAEFDLPPGTFLGDATRLRQALVNYLINALKFTERGG-ITVRCSASA 359

Query: 714 --RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769
              D  D  F V++ G  I     + +F  F        G+  G GLGL+I      L G
Sbjct: 360 VDTDAVDVRFVVEDTGPGIAAAELRRLFKPFTQTEATSTGEHGGTGLGLAITARLAELMG 419

Query: 770 GHVSISSSDEGVTTINCR 787
           G     S     +     
Sbjct: 420 GQAGAESEPGRGSRFWFT 437


>gi|182411863|ref|YP_001816929.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
            PB90-1]
 gi|177839077|gb|ACB73329.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
            PB90-1]
          Length = 1043

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 117/855 (13%), Positives = 260/855 (30%), Gaps = 117/855 (13%)

Query: 8    IGIGKGIEICTLFSCKIAVFGTIAG---MLLTTIIPIILLIRQRNSLAKKVNETYSFLSE 64
            +     ++     S  +     + G   +        I L+     L  ++         
Sbjct: 221  LAFIARLQAALTESLDLDKCADVLGQAFVPRIADWCSIHLVNDAGKL--ELVRLQRNDRV 278

Query: 65   ICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHY 124
                + +  +         +            G L Q     +     L+          
Sbjct: 279  PAGGVPRPAAAPDSLEQRVV----------REGALVQLTGPDEALLRTLA---------- 318

Query: 125  IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL-----------------R 167
                   E+LR           T     ++  G + G  A                   +
Sbjct: 319  -ADEAQLERLRATPD------ITYAGVPLRARGAIIGVLALATLASGRRLGAEECELVRK 371

Query: 168  ILSLDGIYSELAET-----------TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
            I  + G+  + A                 +++      F+ ++++  F +    ++G IL
Sbjct: 372  IAGIAGLALDNARLYRSACQAAAAEAQALREVERSEQRFRFIWEANVFGIGTVARSGQIL 431

Query: 217  WANISYK-------KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
             AN +          +         +              + ++ +        E V   
Sbjct: 432  TANGTLAQLLGYTQDDVAAGRASMNERTAPGWHFVDMHTGEELVRTGRCAPYEKEYVRPD 491

Query: 270  EHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQN 325
                      + +  +       +D++ +      L         I+  +   +     +
Sbjct: 492  GARVQALVCGMVLPQTDESLVFVLDLTAQKHAERALDRQSLLLKTIIDAMPAMVGYLGLD 551

Query: 326  RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
               Q HN  + +   +D   +      + + +             +      + + ++  
Sbjct: 552  ERFQLHNEKYAKWLGVDGFAIQGRTMRELVGDEA-----------YPRIAPYLRAAFRGR 600

Query: 386  ETHKDTWHLPNGQTLHVIVTSNPRG-------GTIWMFENLTVQVDLETKYNTLVKVQGE 438
                +T      +  H+I +  P         G +    ++T + + E      +     
Sbjct: 601  NMRHETTLRTGDRERHLIASYRPDRDADGRVCGVVIHAYDITERKETEQALAEALTRYRF 660

Query: 439  TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
              D + + V    PDG+    N  +       E                 R         
Sbjct: 661  LADAMPQMVWTALPDGQPDYVNRRWLETTGMTEAASLARDGWLEAVHFEDRAITRELWHR 720

Query: 499  LFAAIITSFDDERKSLQG---TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              A  +  F+ E +   G   T        L      L   Q + +  ++ +  RA   L
Sbjct: 721  AVAQCV-PFEHECRLRCGKNPTWRWHLVRALPRRDDHLAVVQWVGSATDMDEQRRAYAEL 779

Query: 556  ------------------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                                +   LR+A+    +F   VS++LR+PL  + GF + ++T 
Sbjct: 780  DEARARLKSHAEELEARVRMRTATLREANAELEAFTYSVSHDLRTPLQFVRGFAEAIRTD 839

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               +L+++   Y++ I  ++T +  ++ D+L  + +      L  + + L+D++++V  +
Sbjct: 840  AGATLSAENRDYLQRIIRAATRMDTIIQDLLSYSRL--ARTDLQLAELPLDDVISDVLAN 897

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARD 715
                + + + R+ V  D  L +  ADR  L Q  S ++SNA+ F+  G    V ++A   
Sbjct: 898  QHAMIRQTSARVSV--DSPLPTVRADRTGLFQAISNLVSNALKFTRAGQPPVVRIRAEVS 955

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                   V++ G  I     + +F  F      G+  G G+GLS+V   ++  GG   + 
Sbjct: 956  ERGVRLWVEDEGIGIDPRHHERIFGLFERLHSPGEYPGTGIGLSLVRKAVSRMGGSCGLE 1015

Query: 776  SSDEGVTTINCRIPS 790
            S  +  +      P+
Sbjct: 1016 SVPDAGSRFWIEFPA 1030



 Score = 41.1 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 46/157 (29%), Gaps = 8/157 (5%)

Query: 171 LDGIYSELAETTLKCKKLSNHISV-FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           + G+   L     + +   +  +  F+++ ++   L+W     G   + N ++   T   
Sbjct: 79  ITGLCVALHSALRRSRVARDEAARNFEIMANNAPVLIWSTGADGCCAFVNRNWVTFTGRA 138

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC-ETVSTLEHGNNKSYKIVRVL----- 283
                +  G+               + A  K F  E          +      V      
Sbjct: 139 SEPHGRRPGQLHPADAARYHAVSTEAMAARKPFRIEYRLRRADDTYRWLHEYAVPRFDQD 198

Query: 284 -NSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
               G  G   DV+      ++L     +   LT ++
Sbjct: 199 GEFEGYIGSCNDVTDSRHEREELAFIARLQAALTESL 235


>gi|169616908|ref|XP_001801869.1| hypothetical protein SNOG_11631 [Phaeosphaeria nodorum SN15]
 gi|160703288|gb|EAT81339.2| hypothetical protein SNOG_11631 [Phaeosphaeria nodorum SN15]
          Length = 1239

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 158/403 (39%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 567 KDLTNNVNTMAENLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTINDMVMRLD 626

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
           +       +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 627 DWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 682

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 683 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 742

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 743 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 799

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +      K+    + D  RL QI   
Sbjct: 800 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYKVPDYVIGDSFRLRQIILN 859

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A+D         F F+V + G  I  D    +F+ F    
Sbjct: 860 LVGNAIKFTEHGEVKVAISMAQDQDCGADQYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 919

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 920 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 962


>gi|73662570|ref|YP_301351.1| respiratory response protein SrrB [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495085|dbj|BAE18406.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 593

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 162/407 (39%), Gaps = 60/407 (14%)

Query: 402 VIVTSNPRGGTIW-MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V V S    G +   F  ++ ++       ++   ++   I+ + EGV  F     I +S
Sbjct: 229 VPVNSRDEIGELSRAFNTMSSEIQQHIDALSSSKNIRDSLINSMVEGVLGFNDKKEIIIS 288

Query: 460 NP------------AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           N             A   L +  E           +    +RY+           IITS+
Sbjct: 289 NKMANTTLQMLDDFALEKLDEQNELTFKNKKTQFEVYEINTRYF----------VIITSY 338

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
            ++ +                     P+ ++ +             A+          D+
Sbjct: 339 IEQIQ---------------------PDGRSGIV------------AIIRDMTNEHNMDQ 365

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K  F+ +VS+ELR+P++ + G+T+ +    + +  ++  + +  +   +  L  LVN++
Sbjct: 366 MKKDFIANVSHELRTPISLLQGYTESIVDGIV-TEPAEIHESLSIVLDETKRLNRLVNEL 424

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L++A +DA  + +      ++ LL++V+Q       +  + + +  +     +  D  R+
Sbjct: 425 LNVARMDAEGLTVKKVVQPIDHLLDKVQQKYQKHAKDLGLNMNLSPNTHNQMWYYDSDRI 484

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+ + ++ NA  ++  G  + ++      + I  + + GS I  +  + VF+RF     
Sbjct: 485 EQVLTNLIDNASRYTEPGDEIKIEFGETQTENILYISDTGSGIAPEHLQQVFDRFYKVDT 544

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +R   G GLGL I    I+ HGG + + S+    TT    +P  +
Sbjct: 545 ARKRGKQGTGLGLFICRMIIHEHGGTIDVKSTLGKGTTFIITLPKPK 591


>gi|87307352|ref|ZP_01089497.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87290092|gb|EAQ81981.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 830

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 113/263 (42%), Gaps = 9/263 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N             V++   L         A+  K+ F+  +S+ELR+P+T I+GFT+ L
Sbjct: 381 NDVVRQFNAMSWKIVQSHDELLAAQHRAESANLAKSRFLATMSHELRTPMTAILGFTENL 440

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             S       ++++ +  I  +   LL L++D+LDL+ ++AG  ++         + NEV
Sbjct: 441 LESPDYGSLEERNETLNTILRNGEHLLGLIDDVLDLSKIEAGRTEIQTELCSPGQIANEV 500

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              +  +     + +++     +      D  RL QI   ++ NA+ F+ KG  + L+ +
Sbjct: 501 IGILKKRAASRRLTLRIRCKTPIPAEIETDALRLRQILLNLVGNALKFTEKGG-ISLELS 559

Query: 714 RDNGDF-----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
              GD         V++ G  IP D  + +F  FV       R   G GLGL I      
Sbjct: 560 STFGDVGRRMLRVRVEDTGPGIPSDQLEHIFEPFVQVDSTTSRSFGGAGLGLPISRRLAE 619

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
           L GG + + S+    +     +P
Sbjct: 620 LLGGTLIVESTIGTGSAFTLSVP 642


>gi|330906611|ref|XP_003295535.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1]
 gi|311333095|gb|EFQ96363.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1]
          Length = 1329

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 156/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 572 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 631

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 632 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 687

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 688 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 747

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 748 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 804

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 805 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 864

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 865 LVGNAIKFTEHGEVKVAISMAQEQECGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 924

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 925 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 967


>gi|257791095|ref|YP_003181701.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257474992|gb|ACV55312.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 713

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 21/309 (6%)

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           + + +G ++  AI  S     ++ Q T E +   +   ++I L  A   ++++    S  
Sbjct: 265 FPDGEGRNIVMAIPVS-----RTAQKTFEGMQSVIGLVAVIVLIVAMLSISWMYYFVSRN 319

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +  +      L      K+ F+  +S+++R+PL  I+G  +L   S   S   K  +++
Sbjct: 320 QKVKIESARVNL------KSDFLTKMSHDIRTPLNAIMGSNELALRSIDDSKTLK--KHL 371

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E    S   LL+++ND+LDL+ +++G M +      L DLL+ +    +    +  + +K
Sbjct: 372 ETSRKSGEYLLSIINDMLDLSRIESGKMTMANRPFALPDLLDSIIVLQSGPAEKKGVVLK 431

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFSVK 724
             S       F+ D  R+ Q    ++SNA+ F+ +  TV++          +    F+VK
Sbjct: 432 ESSRHLVHERFLGDDTRIKQCLVNLVSNAVKFTPEQGTVLVSCEELAQEGSDSRIRFTVK 491

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  + E   K +F  F          + G GLGL IV + ++L GG V + S+ +  T
Sbjct: 492 DTGIGMSESFMKRLFEPFEQEQSSLTSTQIGSGLGLPIVHNLVSLMGGTVHVESAQDAGT 551

Query: 783 TINCRIPSK 791
           T    IP K
Sbjct: 552 TFVVEIPLK 560


>gi|153216852|ref|ZP_01950628.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 1587]
 gi|124114109|gb|EAY32929.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 1587]
          Length = 1146

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 721 VIWSPNSLLLANLDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 471 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 526


>gi|89054779|ref|YP_510230.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88864328|gb|ABD55205.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 346

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 153/363 (42%), Gaps = 33/363 (9%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             ID + + + +  PDG I  +N    +L+       S G  +R                
Sbjct: 8   SLIDAVPDPMVLIAPDGTIGHANAGATALFGGWIIGRSHGLALR-----------HPALL 56

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           +   A+ +     +  ++ + E    +  +  I  L         ++ TD          
Sbjct: 57  EQIDAVRSGEASAKLRIERS-EQAGVTQYKVRISALTGGAAGALVLHFTDIT-------- 107

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
               LR+ +E++  FV +VS+ELR+PLT+++GF + L+     +  + Q +++  + A +
Sbjct: 108 ---HLRETEEMRRDFVANVSHELRTPLTSVMGFIETLR-GPARNDPAAQDRFLGIMEAEA 163

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +  L++D+L L+ V+A   K     + L  LL EV  ++  +  +   R+++I D   
Sbjct: 164 GRMNRLISDLLSLSKVEAAERKRPTEQVDLAVLLEEVIAALRPRADDAGNRLELIHDDAP 223

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKNNGSSI 730
                D  +L+Q+F  +  NA+ +   G  V L+ +R  G            V + G  I
Sbjct: 224 ALVRGDHDQLMQVFLNLAENALKYGGPGQPVTLRLSRGQGGGINGRAMIRVDVTDQGPGI 283

Query: 731 PEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  +  RF         +  G GLGL+IV+  +N H G + I+S     +T + ++
Sbjct: 284 DSQHLPRLTERFYRVDAHRSREMGGTGLGLAIVKHIVNRHRGRLKITSQQGHGSTFSVQL 343

Query: 789 PSK 791
           P +
Sbjct: 344 PVE 346


>gi|323700587|ref|ZP_08112499.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323460519|gb|EGB16384.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 983

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 130/712 (18%), Positives = 252/712 (35%), Gaps = 100/712 (14%)

Query: 116 ENWLKFHHYIKLSKATEK-LRK-EGQSFDLVAETQ----NDCAIKIEGRVSGSCAFL--- 166
           ++WLK  H     +A    +R  EG+      E +    +     I GR  G        
Sbjct: 325 DSWLKSLHPDDRERAMAANMRCIEGEIEQFQVEFRQIHKDGSIRWILGR--GGSTLDENG 382

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           ++  L G ++++ +       L      F+++ +     ++     G  L  N +  +  
Sbjct: 383 KVYRLSGTHTDITQRKQAEDALRESEERFRLMIEHASSGIFQASPEGRFLTVNPALARML 442

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
             +    +  +G    +  + +       + L+  +         G  ++Y+        
Sbjct: 443 GYDS--PEDMVGNVGDIGTDILINDADRQAFLDGIYA-------QGELQNYEYHCRRKDG 493

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           G   +A +       +  + +    L ++T         R L  + R+   L+ I  A  
Sbjct: 494 GAIWLAGNTRMVRAQDGAVAYFEGFLQDITA--------RKL--NERTTHALYAISTAVN 543

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTW----KENIFSVYKSSETHKDTWHLPN----GQ 398
            T    D          ++ E  N+       K ++       +   D + +PN    GQ
Sbjct: 544 TTRNLRDLYQTIHAIIGEVIEARNFFIAMLDEKNDMLRFVYFQDEMDDYFDIPNISDPGQ 603

Query: 399 ---TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
              T+HV  T+ P                        +      I+     + V G    
Sbjct: 604 SSLTIHVFRTAAPL----------------------YLSQADPGIEERLAAIGVIGTP-- 639

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
                PA        +     G       A   +Y +E+  +    +   +   ERK+++
Sbjct: 640 -----PAAWLGVPLRQGERVVGAMAVQDYANPRQYSDEAATFLTAVSEQVAMAIERKTIE 694

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
             L  L++ + +                   +    +  L E N  L   DEIK+S V  
Sbjct: 695 EALTRLNEELED------------KVEQRTAEIEARKAELEEANRRLMTLDEIKSSMVSS 742

Query: 576 VSYELRSPLTNIIGFTDL---------LKTSKLGSLNSKQSQY---VEYISASSTILLNL 623
           VS+ELR+PLT+I GF  L         L  ++   L++K  +    +  I      L  L
Sbjct: 743 VSHELRTPLTSIRGFAKLCAKDFTRHFLPLARGEQLSAKGRRIQGNLGIIDTEGERLTRL 802

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE-NNIRIKVISDGKLGSFVA 682
           +ND LD+  +++G    N  T+    ++ E   S +   +   ++ +  +    +    A
Sbjct: 803 INDFLDINRIESGKACWNDDTLNPTRVIREAVASASGGFNASRSVELVTVLPETVRRIKA 862

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  ++ Q+   +L+NA  F+ +G  V +           SV + GS IPED    +F +F
Sbjct: 863 DPDKIKQVLINLLNNAYKFTRQG-RVTVALLEHAESLTVSVVDTGSGIPEDELNYIFEKF 921

Query: 743 VS----NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 +  R + +G GLGL+I +  +  +GG + + S+    +     +P+
Sbjct: 922 HKSRLGDTVRNEAQGTGLGLAICKEIVEHYGGTIRVQSTLGRGSVFTFTLPT 973



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 123/370 (33%), Gaps = 47/370 (12%)

Query: 133 KLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHI 192
            +RK+G    +V        ++ +G+V G         L G+  +++E       L +  
Sbjct: 107 AMRKDG---SVVPIKTYTQPVRRDGQVVG---------LRGVVIDVSEIRQVEDALRSSE 154

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK-- 250
           + +++LF++    +    +   I   N  +   +       +  +G +  +  +E K+  
Sbjct: 155 THYRILFETTGTAMVLLGKDATIRRCNSQFCLMSGCTREEIEGKLGWTDFVPPDEQKRME 214

Query: 251 -----RMISSSALEKNFCETVSTLEHGNNKSYKIVR-VLNSFGEAGIAIDVSKEITVNDQ 304
                R         ++  T  T +    + +  VR V ++       IDV++       
Sbjct: 215 RFQEDRARKIGHPPSDYEFTFLTRDGVRRRIHLFVRNVPDTDDRVCSLIDVTERDEALHA 274

Query: 305 LTHTYEILHNLT----VAIAIFDQNRYLQFHNRSFVELWEIDL--------AFLATNPSN 352
           L  + E    +       +  +       F++  + E+             ++L +   +
Sbjct: 275 LRKSEERYQLMARGANDGLWDWYLASDECFYSPRYREILGYTEEEFPNCVDSWLKSLHPD 334

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           D   E   +AN    +   + ++     ++K        W L  G       ++    G 
Sbjct: 335 DR--ERAMAANMRCIEGEIEQFQVEFRQIHKDGSIR---WILGRG------GSTLDENGK 383

Query: 413 IW----MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           ++       ++T +   E       +     I+H S G+    P+GR    NPA   +  
Sbjct: 384 VYRLSGTHTDITQRKQAEDALRESEERFRLMIEHASSGIFQASPEGRFLTVNPALARMLG 443

Query: 469 TEENRLSPGT 478
            +      G 
Sbjct: 444 YDSPEDMVGN 453



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/450 (13%), Positives = 139/450 (30%), Gaps = 41/450 (9%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKV-----LFDSLDFLVWHRDQAGDILWANISYKKNTE 227
                 AE   +   L       +      + D     ++  D+     +AN    +   
Sbjct: 4   DERKTKAELIAELDDLRARFDSVRDQAWPPIADEFPLFIFEIDRDEIFRYANKHALETFG 63

Query: 228 TEGIVFQKAIGESRKLFKEEIKKRMISSSAL--EKNFCETVSTLEHGNNKSYKIVRVLNS 285
            +    +  +  +  +  + I++  ++ + +   ++F          +     I      
Sbjct: 64  YDEEDLRTDLPLTAIIHPDSIRRARLNLARVLNGEDFEHEEYMAMRKDGSVVPIKTYTQP 123

Query: 286 F-------GEAGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRS 334
                   G  G+ IDVS+   V D L     H   +      A+ +  ++  ++  N  
Sbjct: 124 VRRDGQVVGLRGVVIDVSEIRQVEDALRSSETHYRILFETTGTAMVLLGKDATIRRCNSQ 183

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK---ENIFSVYKSSETHKDT 391
           F          L +  + +E+   L   + +P     +  +   +    +      ++ T
Sbjct: 184 FC---------LMSGCTREEIEGKLGWTDFVPPDEQKRMERFQEDRARKIGHPPSDYEFT 234

Query: 392 WHLPNG--QTLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           +   +G  + +H+ V + P     +    ++T + +         +         ++G+ 
Sbjct: 235 FLTRDGVRRRIHLFVRNVPDTDDRVCSLIDVTERDEALHALRKSEERYQLMARGANDGLW 294

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRL-SPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            +         +P +R +    E    +             R    +         I  F
Sbjct: 295 DWYLASDECFYSPRYREILGYTEEEFPNCVDSWLKSLHPDDRERAMAANMRCIEGEIEQF 354

Query: 508 DDERKSL--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             E + +   G++  +               +   T  ++T   +AE AL E  E  R  
Sbjct: 355 QVEFRQIHKDGSIRWILGRGGSTLDENGKVYRLSGTHTDITQRKQAEDALRESEERFRLM 414

Query: 566 DEIKNSFVQHVSYELR----SP-LTNIIGF 590
            E  +S +   S E R    +P L  ++G+
Sbjct: 415 IEHASSGIFQASPEGRFLTVNPALARMLGY 444


>gi|320160300|ref|YP_004173524.1| two-component hybrid sensor and regulator [Anaerolinea thermophila
           UNI-1]
 gi|319994153|dbj|BAJ62924.1| two-component hybrid sensor and regulator [Anaerolinea thermophila
           UNI-1]
          Length = 1087

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 4/244 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD--LLKTSKLGSLNSKQS 607
           R  +          +A+++K   + +V +E+R+PL  I+G+    L +  + G  +++  
Sbjct: 461 RLYQEARNAQNTAERANQLKTRLLANVGHEMRTPLNVILGYAQSALNRHKRSGHHDTELE 520

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN- 666
           + ++ IS S   LL ++ND+LDL+  + G + + +  +    ++ E  ++ A    +N  
Sbjct: 521 RDLQIISQSGEHLLRMINDLLDLSRAEIGALNMYFEWMDPRPIILEAFETFARSEEQNPF 580

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           IR +V    +L    AD  RL QI   +LSNA  F+ +G  ++L A  +      SV + 
Sbjct: 581 IRWRVEIPERLPIIQADSARLKQILLNLLSNARKFTHEGE-IVLSAHVEPPFLRLSVADT 639

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I  +  + +F  F ++  + +  G+GLGLSI    I LHGG +++ S     +T   
Sbjct: 640 GEGISLEQQERLFEPFSASMGKRRPSGIGLGLSITRHLIALHGGTLTLESQPGKGSTFYI 699

Query: 787 RIPS 790
            +P 
Sbjct: 700 YLPL 703


>gi|148269219|ref|YP_001243679.1| histidine kinase [Thermotoga petrophila RKU-1]
 gi|147734763|gb|ABQ46103.1| histidine kinase [Thermotoga petrophila RKU-1]
          Length = 493

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 158/387 (40%), Gaps = 47/387 (12%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
             + EN+ +  +LE  YN +       ++ L EG+ V+   G IK  N  F+     +E 
Sbjct: 134 AIVLENIKLYRELEETYNYVN----VILNGLPEGIFVYSS-GEIKFQNEKFKEENFPDEV 188

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                +      +  ++   E    + F +I                         + IP
Sbjct: 189 LKKAISLSEEAISLRTQRVGEVISGEEFFSI-------------------------TSIP 223

Query: 533 L---PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           L      Q +    NVT+S   ER        L++ D +K  F+ ++S+ELR+PLT I  
Sbjct: 224 LVLGSEVQALTIVENVTESKELER--------LKRIDRMKTEFIANISHELRTPLTAIKA 275

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           + + +  +          +++E I   S+ L NL+N++LD + ++   +++N   I L  
Sbjct: 276 YAETIYNTLEELDLGTLKEFLEVIMDQSSHLENLLNELLDFSRLERKSLQINREKIDLCG 335

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST- 707
           L+     +I      +N+ +   S+         D  R+ Q+   +L+N + +S K    
Sbjct: 336 LIESAVNAIKEFASSHNVNVLFESNVPCPVEAYVDPTRIRQVLLNLLNNGVKYSKKDVPD 395

Query: 708 --VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
             V +     +G  + +V++NG  IP+     +F +F            G GLGL+I + 
Sbjct: 396 KYVRVILDEKDGGVLITVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLTITKE 455

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPS 790
            + LHGG + + S     +     IP 
Sbjct: 456 IVELHGGKIWVESEVGKGSRFFVWIPK 482


>gi|52079040|ref|YP_077831.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52002251|gb|AAU22193.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
          Length = 1030

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R     +  L + + +K+ F+   S+E ++PL ++I     L   K      ++ + +
Sbjct: 412 AFRENEILSLKLLRMNRLKDEFIAKTSHEFKTPLNSMINICQTLLARKRKRTLEEEKENL 471

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +      L +LVNDILDL  +  G++++    +  +  ++             N+RI 
Sbjct: 472 QLVIRMGYRLSSLVNDILDLEKMKQGMLQIQAVPVDAHSAISTEMDFYRLLSKNKNVRIV 531

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSS 729
                 L   +AD  R  QI + ++ NA+ ++ +G  + L A R D      +V + G  
Sbjct: 532 NRVPSGLPLVLADENRFRQIMTNLVDNAIKYTPEG-QITLSAERLDQEKVKITVADTGVG 590

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+ + + +F  F    +  +  G GLGLSIV   + L  G + + S +   +  +  +P
Sbjct: 591 IPKAVRQLIFEAFQQAKN-HKDDGAGLGLSIVRQLVQLQNGEIWVESEEGKGSAFHFTLP 649

Query: 790 SKE 792
             +
Sbjct: 650 VAK 652



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 85/244 (34%), Gaps = 54/244 (22%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            A     E      +IK  F+ +V       L  II  + L         + ++++ V   
Sbjct: 814  AQATNMEMAFLQSQIKPHFLFNV-------LNTIIALSHL---------DIEKAREVTAD 857

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +   +        D     +G+    +        L+ V   ++ +      R+ VI 
Sbjct: 858  FTNYLRMS------FDF-QNTSGMSSFKHE-------LSIVNSYLSIEKTRFGDRLDVIY 903

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDF--SSK--GSTVILKAARD-NGDFIFSVKNNGS 728
            D +          ++Q    ++ NA+    S K  G  + L A ++    +   +++NG 
Sbjct: 904  DIEEDIDFTLPPLMIQ---PLVENAVHHGISKKRGGGWIKLTAKKESENRYYIKIEDNGI 960

Query: 729  SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH----GGHVSISSSDEGVTTI 784
             +P +  + +F     ++H     G+       ++         G  ++I S+ +  T +
Sbjct: 961  GMPPEKQQDIF-----SSHFTHSVGM-------KNINRRLKHFCGSELNIESTPDSGTAV 1008

Query: 785  NCRI 788
            +  I
Sbjct: 1009 SMVI 1012


>gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1010

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 3/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
               ++ EAL + D  K +F  ++S+E R+PLT ++G  + L + + G L  +Q   V  
Sbjct: 334 EEARKRAEALLEIDRAKTAFFSNISHEFRTPLTLMLGPLEELLSQQDGVLTKQQEANVTA 393

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              ++  LL LVN +LD + ++A  ++  Y  + L+D+  ++  +    +    +   V 
Sbjct: 394 THRNAMRLLRLVNTLLDFSRIEADKVRAQYFPVNLSDVTTDIASTFRAAVEHAGLEFNVT 453

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                 +   DR    ++   +LSNA  ++ +GS + +     +   I  V++ G  IP 
Sbjct: 454 CKDLSMAAYVDRDMWEKVILNLLSNAFKYTLQGS-ISVILEESDQHAILLVRDTGVGIPV 512

Query: 733 DMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               ++F RF  V  +      G G+GLS+V   + LH G +S+ S +   +T   +IP 
Sbjct: 513 SELPNMFERFHRVKQSKGRSFEGTGIGLSLVRELVQLHNGDISVESEEGKGSTFAVKIPL 572



 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 133/411 (32%), Gaps = 56/411 (13%)

Query: 429  YNTLVKVQGETIDHLSEG-----VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            +N      G  ID + EG     V +   +  ++             E   +    +  I
Sbjct: 607  FNRQQDSNGIDIDRIEEGEERARVLIVDDNADMRDYLQRLLEKQYYIETAANGKLALEKI 666

Query: 484  AATCSRY------YNESDGWDLFAAIITSFDDE---------RKSLQGTLELLSDSVLEY 528
            A              E DG +L   +  +   E         R   + T+E       +Y
Sbjct: 667  ATHQPELIISDVMMPEMDGIELLHHVKHNPATESLPVILVSARAGEEATIEGYDIGADDY 726

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKN-----------SFV 573
               P    +            R  R     L    E L K  E +             F 
Sbjct: 727  LTKPFSAKELQARVRAQIRVSRLHRHALDILQHSAEELEKKVEARTSELLRKNSELEQFA 786

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
               S++L+ PL  I  F++LL+ S         + Y + I +S+  +  L+ D+LD + +
Sbjct: 787  YIASHDLQEPLRKIRTFSELLQKSLQKGNP--VNNYFDKIQSSAERMTQLIKDVLDYSRL 844

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
                 +  +  I LN +L +VK      + +    IK      L        +L Q+F+ 
Sbjct: 845  --SNTEEKFVPIDLNTILQQVKGDFDLLIEQKQATIK---SNTLPVVKGIPLQLQQLFTN 899

Query: 694  ILSNAMDFSSKGSTVILKAA--------------RDNGDFIFSVKNNGSSIPEDMCKSVF 739
            ++ N++ F      + + A+               D         +NG    +   + +F
Sbjct: 900  LIGNSLKFCENQPLISIFASPLPAPEIPFYPGLQEDISYVKLEFSDNGIGFEQQFAERIF 959

Query: 740  NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              F     R    G G+GL++ +  +  H G +  +       T    +P+
Sbjct: 960  AIFQRLNERKVYAGTGIGLALCKKIVENHHGIIRANGKLNEGATFTVILPA 1010


>gi|229163665|ref|ZP_04291613.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803]
 gi|228619802|gb|EEK76680.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803]
          Length = 484

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 121/273 (44%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I    + +         +     + L E  E   + +E +   + ++S+
Sbjct: 208 ERIKEGNLDFQISVTSHDEIGQLNQGFEE---MRKKLKESIEVQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I I +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEIHLQLHASPQYVTADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +  HGG +   S     T+I   +
Sbjct: 444 LGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|297196322|ref|ZP_06913720.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722900|gb|EDY66808.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 1150

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 143/310 (46%), Gaps = 18/310 (5%)

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           D      A +++   E ++ Q  L+  +  + E +   L   +         +  +A + 
Sbjct: 690 DRSQRLTAELSNRSRELQARQEELQRSNAELKEKAA--LLADRNRDIERKNLEIEQARQE 747

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  + + L +    K+ F+ ++S+ELR+PL +++    LL  +  G+L  KQ  Y E I 
Sbjct: 748 LEARAQQLSRTSMYKSEFLANMSHELRTPLNSLLILAQLLAQNLEGNLTEKQVDYAEVIH 807

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           ++ + LL L+NDILDL+ V+AG M ++ +   L+ L+  V+ +      E  +  + +++
Sbjct: 808 SAGSDLLQLINDILDLSKVEAGKMPVHPAAFPLSGLMEHVEATFRPVATERELAFEAVTE 867

Query: 675 GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----------RDNGDFI-F 721
                ++  D  RL Q+   +LSNA+ F+ +G  V L+ A           RD+G  + F
Sbjct: 868 PDAPQWLTTDESRLRQVLRNLLSNALKFTDQG-RVELRVAVAGEEEVPSSLRDSGPVVAF 926

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V + G  IP D  +S+F  F            G GLGLSI      L GG +   S+  
Sbjct: 927 RVVDTGIGIPADRLESMFGAFQQGDGTTSRHYGGTGLGLSISREVARLLGGTIEAQSTLG 986

Query: 780 GVTTINCRIP 789
             +     +P
Sbjct: 987 RGSCFTLYLP 996


>gi|325273498|ref|ZP_08139736.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp.
           TJI-51]
 gi|324101374|gb|EGB98982.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp.
           TJI-51]
          Length = 644

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +    L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+    L+++Q
Sbjct: 244 EQQQTIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNGVMGMLQLLETT---PLSNEQ 300

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN- 665
           + Y    S S+  LL ++NDILD + ++   ++L +    L +L+    QS      +  
Sbjct: 301 ADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDFNLGELITSSVQSFQHSAQQRG 360

Query: 666 -NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
             + +++ +D        D  R+ QI   ++ NA+ F+ +G   V  +    +   I   
Sbjct: 361 LGLHLQLPADIDQLQVNGDPTRIRQILLNLVGNALKFTERGQVQVEARWQVVDRQLIWLT 420

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV++ G  I  D  + +F  F         +  G GLGLSI  +     GG +   S  
Sbjct: 421 CSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAERMGGKLRGESHV 480

Query: 779 EGVTTINCRIPS 790
              +T    +P 
Sbjct: 481 GQGSTFTLEMPL 492


>gi|302556930|ref|ZP_07309272.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302474548|gb|EFL37641.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1334

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 16/269 (5%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            AQ            +A + L  + + L  A + K+ F+ ++S+ELR+PL +++    LL 
Sbjct: 737  AQNRDIEAKNLQIEQARQELEARAQQLSLASKYKSEFLANMSHELRTPLNSLLILAQLLA 796

Query: 596  TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +   +L+ KQ +Y + I ++ + LL L+NDILDL+ V+AG M ++   + L  L+  V+
Sbjct: 797  QNPSRNLSPKQVEYAQIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVELRRLIEYVE 856

Query: 656  QSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             +      + ++   V  + G     + D  RL Q+   +LSNA+ F+ +G  V L+   
Sbjct: 857  ATFRPMTMQKSLDFTVTTAPGAPADLLTDDSRLRQVLRNLLSNAVKFTERGE-VRLRIEP 915

Query: 715  DNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
               D              F V++ G  IPE   +++F  F         +  G GLGLSI
Sbjct: 916  APDDEVPSGVLRGGPVVAFRVQDTGVGIPEQHLEAIFGAFQQADGTTSRKYGGTGLGLSI 975

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIP 789
                 +L GG V++ S     +T    +P
Sbjct: 976  TREIAHLLGGAVTVDSVAGQGSTFTLFLP 1004


>gi|238791234|ref|ZP_04634873.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
 gi|238729367|gb|EEQ20882.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
          Length = 911

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 268 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 324

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 325 QRSANNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVIILLAHTAHEKGLELTLHV 384

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGS 728
           +  +    V D  RL QI + +L NA+ F+ +G+  ++L            +  + + G 
Sbjct: 385 NNDVPEQLVGDAMRLQQIVTNLLGNAIKFTEQGNIDILLAVQAKTDQQVTLVVEIHDTGI 444

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S  +  +T   
Sbjct: 445 GISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVDRGSTFRF 504

Query: 787 RI 788
            +
Sbjct: 505 HL 506


>gi|228939140|ref|ZP_04101734.1| hypothetical protein bthur0008_18010 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972018|ref|ZP_04132635.1| hypothetical protein bthur0003_17950 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|229150235|ref|ZP_04278456.1| hypothetical protein bcere0011_17890 [Bacillus cereus m1550]
 gi|228633207|gb|EEK89815.1| hypothetical protein bcere0011_17890 [Bacillus cereus m1550]
 gi|228787677|gb|EEM35639.1| hypothetical protein bthur0003_17950 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820509|gb|EEM66540.1| hypothetical protein bthur0008_18010 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 443

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 205 ELGELAHSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEI 263

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  
Sbjct: 264 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKE 323

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+     D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ 
Sbjct: 324 IQFITTIDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDE 381

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  
Sbjct: 382 GIGIAKEHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILI 439

Query: 787 RIPS 790
           ++P 
Sbjct: 440 KLPL 443


>gi|114706954|ref|ZP_01439853.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537504|gb|EAU40629.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 490

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 143/345 (41%), Gaps = 21/345 (6%)

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           V    G I   N A   L         P      + +        +        +     
Sbjct: 128 VVSSAGCIMKGNRAGEVLSDEIGTHAGPPVLFDLLDSASRATAMAALREHTSHPVTVRLK 187

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           ++   L   L L  ++ +   + P+         +   +  R   A+             
Sbjct: 188 NDETRLLHVLTLDGETNVLTVLRPVAGDAKGANQLAEPEPGRLSEAM------------- 234

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLVNDI 627
               +  VS+ELR+PL  IIGF+ +L+    G+LN  KQ +YV  I +S   LL++VNDI
Sbjct: 235 ----LATVSHELRTPLNAIIGFSGILENELFGALNSDKQREYVGLIQSSGRHLLSVVNDI 290

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           LD++ ++AG  +L+    +L++++ E    +  +  +  + I++       +   DR+ L
Sbjct: 291 LDVSKIEAGAYQLHCEHFLLDEVVEEASAMVRCQADQKGVSIEIACPPGGTTIHGDRRAL 350

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
             +   +L+NA+ F+  G TV L   R   D   +V + G  IP D    +   FV  + 
Sbjct: 351 NHMLVNLLANAVKFTDAG-TVTLSWERAGRDLRLNVADTGIGIPADQIGKLGKPFVQASC 409

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGL+ V     LHGG ++I S++   T +   +P 
Sbjct: 410 GMSRRYEGTGLGLAYVRGMCELHGGAMTIESTEGEGTRVMLDMPL 454


>gi|94266984|ref|ZP_01290632.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
 gi|93452318|gb|EAT02952.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
          Length = 875

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 153/420 (36%), Gaps = 56/420 (13%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                        E +++ +  V      GR+   N   +  +   E  +     +  I 
Sbjct: 295 ATASLKASESKYRELVENANSIVLKMDLQGRVTFFNEYAQRFFGYREEEIMGREVVGTIV 354

Query: 485 ATCSRYYNESDGW--DLFA--AIITSFDDERKSLQGTLELLSDSVL------EYSIIPLP 534
                   +      D+F      TS ++E +   G+   +S +        E + +   
Sbjct: 355 PGRDLAGRDLAAMIKDVFENPGQYTSNENENRKRDGSRVWVSWTNRAIYEDGELTGLLCI 414

Query: 535 NAQTMLTFVNVTDSVRAERALTEK-----------NEALRKADEIKNSFVQHVSYELRSP 583
                          R ++ L E            N  L +    K+ F+  +S+E+R+P
Sbjct: 415 GNDITRLKEAEDQLRRHQQELEEMVNARTDELLTANAELNRVSAYKSRFLSAMSHEIRTP 474

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  IIGF++L              QY+E I  +   LL L+N ILDLA +++G ++L   
Sbjct: 475 LQTIIGFSNLALEGGSQPP----RQYLEMIKTAGDTLLELINGILDLAKIESGRLELAER 530

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFS 702
                + + +  +  A    +  +      D  +    V D  RL Q+   ++ NA+ F+
Sbjct: 531 CFKPAEFIGKTLEPYAFAARQRGLAFDTSIDPAVPGEVVGDPARLTQVLVNLVGNALKFT 590

Query: 703 SKGSTVI-LKAARDNGD------------------------FIFSVKNNGSSIPEDMCKS 737
            +G  V+ ++ A D+ D                          F+V+++GS I  +    
Sbjct: 591 EEGEIVVSVRPAADDADRRPTVGAGRAEVAPPAASDATSGLLHFTVRDSGSGIAAEQQGR 650

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI-----PSKE 792
           +F RF          G GLGL+I  S + L GG + + S     ++ +  I     P +E
Sbjct: 651 IFTRFAQGEGASPHGGHGLGLAIAASLVELMGGEIWLESRPGEGSSFHFTIAYRLPPPRE 710


>gi|91788257|ref|YP_549209.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91697482|gb|ABE44311.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 618

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 153/388 (39%), Gaps = 25/388 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           ++V  +        +Q   +   +  +      G I+L N     +       +    + 
Sbjct: 69  IEVKRQEALLKTGALQTAILTSENFSIIATDEKGIIQLFNVGAERMLGYMAAEVVNKINP 128

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE------------- 527
            +I          +    L   + T+     ++L        + + E             
Sbjct: 129 SDI---HDPQEVMARAQALSVELATTITPGFEALAFKASRGIEDIYELTYICKDGSRFPA 185

Query: 528 -YSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             SI  L +        +L   + +   + E AL E      KA+  K+ F+  +S+ELR
Sbjct: 186 IVSITALRDDFGTVIGYLLIGTDNSVRKQVEVALKEAMAVAEKANLAKSDFLSSMSHELR 245

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL+ I+GF  L+++       S Q + V+ I  +   LL L+N+ILDLA +++G + L+
Sbjct: 246 TPLSAILGFAQLIESGTPQPTPS-QKRSVDQILQAGWYLLELINEILDLALIESGRLSLS 304

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + L +++ E +  + ++  +  IR+            ADR RL Q+   +LSNA+ +
Sbjct: 305 LEPVSLAEVMLECETLVESQAAKRGIRVTFPQFSLPCFVKADRTRLKQVLINLLSNAIKY 364

Query: 702 SSKGSTVILK-AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLS 759
           ++ G TV+LK            V++ G  +       +F  F          +G G+GL 
Sbjct: 365 NTSGGTVVLKCVNVSPQRIRICVEDTGEGLNPAKIAQLFQPFNRLGQEANTEQGTGIGLV 424

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCR 787
           + +  I L GG + + S     +     
Sbjct: 425 MTKRLIELMGGAIGVESIVGQGSVFWIE 452


>gi|312891952|ref|ZP_07751455.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311295583|gb|EFQ72749.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1383

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 117/266 (43%), Gaps = 15/266 (5%)

Query: 536  AQTMLTFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTD 592
                         +  + AL  + E  ++  E   +K  F  ++S+E R+PL+ I+   D
Sbjct: 831  GGLFYIRHRAIQKIELKYALEREREEAQRMHELDMMKIKFFTNISHEFRTPLSLIMAPVD 890

Query: 593  -LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             +LK +       +Q + ++ ++ ++  LLN+VN +LD   ++   +KL+     +   +
Sbjct: 891  KILKHTD----KPEQRRQLQMVNRNARRLLNMVNQLLDFRKMEVQELKLHPRKGDIIGFI 946

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--- 708
             E+  S +    + NI     ++ +      D  ++ +I   +LSNA  F+ +G  V   
Sbjct: 947  QEMAGSFSDVADKKNIGFVFDTEVEYLEVNFDHDKIERILFNLLSNAFKFTPEGGHVSVL 1006

Query: 709  --ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESF 764
               ++ A         V ++G  I  D  + VF RF  N   G    +G G+GLSI + F
Sbjct: 1007 LSTVERAGAEQWLEIKVIDSGIGIALDKQEKVFERFFQNEVPGSMVNQGSGIGLSITKEF 1066

Query: 765  INLHGGHVSISSSDEGVTTINCRIPS 790
            + LH G +++ S     +     +P 
Sbjct: 1067 VKLHHGEITVESEPGQGSYFTVLLPL 1092


>gi|126460950|ref|YP_001042064.1| hypothetical protein Rsph17029_0173 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102614|gb|ABN75292.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 520

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 184/484 (38%), Gaps = 23/484 (4%)

Query: 65  ICDQLSKYHSLLTENNCL--TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFH 122
           +  +  +    +  ++      ++DG+       G        P      L    +L   
Sbjct: 29  LQTRAGRRPEGVFSDSQAGTVFLFDGETLLDATPGARAILALSPARGGPWLRLLAYLVPR 88

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
               L     +L ++G+ F L A       + +   + G     R+   D   +E     
Sbjct: 89  FP-DLEARLSRLARDGR-FTL-ASAAEGEPLLLMAEMRGG--ITRLTIDDPSSAERPRLD 143

Query: 183 -LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  + L+  +   +        ++W     G+++WAN +Y +         +       
Sbjct: 144 HLSQRALAEELDQLRATVAQAPLMMWRESAGGEVIWANAAYLREAAKRLPPDRDLSWPLP 203

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID----VSK 297
           +LF          +++ +    +       G ++ + +    +  G    A+     V  
Sbjct: 204 RLFD--------RAASAQGAPRQRQRIEVKGVDRWFDLESFADPAGRLLFALPADAAVQA 255

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E T+ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS    LE
Sbjct: 256 EATLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTGLPPDMLALQPSLFSFLE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            LR    +PE  ++ +W+  I  + K++ +  + +TW LP+GQT  VI   +P G    M
Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAAASGLYAETWSLPSGQTYRVIGRPHPNGALALM 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           FE+++ ++    +Y   +++    +D + + +AVF P G + ++N A+ +LW  +     
Sbjct: 376 FEDISTEMTRTRRYRADLELGQAVVDAMEDAIAVFSPAGDLVMTNAAYGALWGHDPVETV 435

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            G     +        + S  W      + +    R    G + L    ++     PL  
Sbjct: 436 GGGAAVQLCEQWRARSSPSPIWVEAERFLAAL-GPRDPWSGEIRLEDGRLVSCRFAPLTG 494

Query: 536 AQTM 539
             T+
Sbjct: 495 GATL 498


>gi|315607847|ref|ZP_07882840.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
 gi|315250316|gb|EFU30312.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
          Length = 869

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 4/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +  +     +A   K  F  ++S+ELR+PLT I    + +      +L  +Q   +  
Sbjct: 344 RTIIMRRRLEEEATNAKLQFFTNISHELRTPLTLIADPVEHIIDD--NNLTRQQRNMLLI 401

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +  +L  LV++ILD   +  G M L  S   L   + +     AT   +  I +++ 
Sbjct: 402 VRRNVNVLTRLVSEILDFRKIQNGKMTLTLSDFDLAVYMRQWLDVFATTAGKKKISLELH 461

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +   L S  AD  ++ +I   +LSNAM ++ +G  +   A  +       V + G  +  
Sbjct: 462 AASPL-SIRADIYKVERICYNLLSNAMKYTPEGGRITFSAVTEGDFVHIGVTDTGIGMTR 520

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           D    VF RF    H  +  G G+GL+IV+SF  LH G V++ S     +T    +P K
Sbjct: 521 DEAAHVFERFYQVRHPHK-GGTGIGLAIVKSFAELHKGTVAVESEPGRGSTFTVTLPLK 578


>gi|153828872|ref|ZP_01981539.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 623-39]
 gi|148875668|gb|EDL73803.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 623-39]
          Length = 1146

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 721 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIKVKSEFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 471 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 526


>gi|312887562|ref|ZP_07747156.1| two component transcriptional regulator, AraC family
            [Mucilaginibacter paludis DSM 18603]
 gi|311299932|gb|EFQ77007.1| two component transcriptional regulator, AraC family
            [Mucilaginibacter paludis DSM 18603]
          Length = 1363

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 126/276 (45%), Gaps = 15/276 (5%)

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +L  S I     + +          +AER     +  L + D +K  F+ ++S++LR+P+
Sbjct: 793  ILTISSILYLRFRGIQKLKLEFKQEQAERE----SARLHELDGLKIKFLTNLSHDLRTPI 848

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            + I+G  + L        +S     ++ +  ++  LLNLVN +LD   ++   +KLN   
Sbjct: 849  SLIMGPVEKLINHSPMDGDSMVQ--LKVVKRNARRLLNLVNQLLDFRKIEERELKLNPVM 906

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              +   + E  +S      +  I   + S  +  +   D  +L +I   +LSNA  FSS+
Sbjct: 907  GDVIAFIREACESFQDLSEKKQIAFVIKSSIERLNIPFDPDKLERIMFNLLSNAFKFSSE 966

Query: 705  GSTVILKAARDN-------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
            G  V++     N          +  V + G  I E+    +F RF  +   G    +G G
Sbjct: 967  GGKVMVVVYLKNTGRNNLENSLVVEVTDTGIGIKEESQAYIFERFYQSRALGAVADQGSG 1026

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +GLSIV+ F+ +HGGH+++ S     TT +  +P +
Sbjct: 1027 IGLSIVKEFVQMHGGHINVESVKGTGTTFHIELPFR 1062


>gi|52784412|ref|YP_090241.1| YwpD [Bacillus licheniformis ATCC 14580]
 gi|319648656|ref|ZP_08002867.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52346914|gb|AAU39548.1| YwpD [Bacillus licheniformis ATCC 14580]
 gi|317389075|gb|EFV69891.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 1031

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R     +  L + + +K+ F+   S+E ++PL ++I     L   K      ++ + +
Sbjct: 413 AFRENEILSLKLLRMNRLKDEFIAKTSHEFKTPLNSMINICQTLLARKRKRTLEEEKENL 472

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +      L +LVNDILDL  +  G++++    +  +  ++             N+RI 
Sbjct: 473 QLVIRMGYRLSSLVNDILDLEKMKQGMLQIQAVPVDAHSAISTEMDFYRLLSKNKNVRIV 532

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSS 729
                 L   +AD  R  QI + ++ NA+ ++ +G  + L A R D      +V + G  
Sbjct: 533 NRVPSGLPLVLADENRFRQIMTNLVDNAIKYTPEG-QITLSAERLDQEKVKITVADTGVG 591

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+ + + +F  F    +  +  G GLGLSIV   + L  G + + S +   +  +  +P
Sbjct: 592 IPKAVRQLIFEAFQQAKN-HKDDGAGLGLSIVRQLVQLQNGEIWVESEEGKGSAFHFTLP 650

Query: 790 SKE 792
             +
Sbjct: 651 VAK 653



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 85/244 (34%), Gaps = 54/244 (22%)

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            A     E      +IK  F+ +V       L  II  + L         + ++++ V   
Sbjct: 815  AQATNMEMAFLQSQIKPHFLFNV-------LNTIIALSHL---------DIEKAREVTAD 858

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +   +        D     +G+    +        L+ V   ++ +      R+ VI 
Sbjct: 859  FTNYLRMS------FDF-QNTSGMSSFKHE-------LSIVNSYLSIEKTRFGDRLDVIY 904

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDF--SSK--GSTVILKAARD-NGDFIFSVKNNGS 728
            D +          ++Q    ++ NA+    S K  G  + L A ++    +   +++NG 
Sbjct: 905  DIEEDIDFTLPPLMIQ---PLVENAVHHGISKKRGGGWIKLTAKKESENRYYIKIEDNGI 961

Query: 729  SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH----GGHVSISSSDEGVTTI 784
             +P +  + +F     ++H     G+       ++         G  ++I S+ +  T +
Sbjct: 962  GMPPEKQQDIF-----SSHFTHSVGM-------KNINRRLKHFCGSELNIESTPDSGTAV 1009

Query: 785  NCRI 788
            +  I
Sbjct: 1010 SMVI 1013


>gi|330836391|ref|YP_004411032.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           coccoides DSM 17374]
 gi|329748294|gb|AEC01650.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           coccoides DSM 17374]
          Length = 627

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 169/385 (43%), Gaps = 25/385 (6%)

Query: 423 VDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            +L  + + L + +      +  +SEG+ +      I LSN A  ++             
Sbjct: 229 KELAARISQLERDKQQYSSILSSMSEGLLLVDSRNIIVLSNNAANTMLGKGFPEAQSL-- 286

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
              + A  S  + + D   L A  + S    + S+     L   +    S++     QT 
Sbjct: 287 ---VGAKLSEIFTDDDFLKLVATTMHSGKVGQTSIVKYKHLTGQTA---SLVGAGREQTF 340

Query: 540 LTFVNVTDSVRAE--RALT-------EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                +   ++ E  +A+T            L++ ++++  FV +VS+EL++PLT I GF
Sbjct: 341 QVSTAIVPGMQEESGKAVTGGILITFTDITELKRLEQVRKDFVANVSHELKTPLTAINGF 400

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           ++ L    + S       + + I+ ++  +  +++D+L LA+++     L      L +L
Sbjct: 401 SETLLGGMISS--EDIGLFSKIINRNARQMQGIIDDLLLLASLEDDHAALTMKRCTLEEL 458

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           + E  +  + + +  ++ +      + G   + +   L+Q    ++ NA+ +S  GS V 
Sbjct: 459 VKETCEDTSYRANSRSVILTTTVHDENGRGVMVNPSLLVQALVNLVINAITYSEPGSEVR 518

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +KA  D     FSV + GS IPE     +F RF          + G GLGLSIV+  +++
Sbjct: 519 IKAEGDQDTVTFSVMDQGSGIPEKHLTRIFERFYRVDKARSRNQGGTGLGLSIVKHVVSM 578

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
           HGG VS+ S +   +T    IP ++
Sbjct: 579 HGGQVSVQSVENLGSTFTITIPREQ 603


>gi|299529743|ref|ZP_07043178.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           S44]
 gi|298722261|gb|EFI63183.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           S44]
          Length = 943

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 154/369 (41%), Gaps = 43/369 (11%)

Query: 432 LVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
            + +  + I+    G+++    DGR+ +SN A R L                        
Sbjct: 352 SLALNNKIIEVAPVGLSLVRRSDGRLLVSNDAARRLL----------------------- 388

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSV 549
               D  D +   I        S +  L      +L ++ +P  +   +     ++T   
Sbjct: 389 ----DEHDSWREDIRQATTRAGSRECELRDGRSVILTFASMPYQSEDVVICGISDITVQK 444

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             ER+L     A  + +E K  F   +S+E+R+PL  I+G  +LL    L  LN +Q QY
Sbjct: 445 EVERSLRSAKLAADQVNEAKTMFFATLSHEIRTPLYGIVGTMELLA---LTGLNVQQQQY 501

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I  SS  LL  +ND LDL+ ++AG  +L  + +   +LL  V  + A +     + I
Sbjct: 502 LNTIQQSSATLLRTINDTLDLSRIEAGRQELYIAEVSPAELLERVVANFAARAQGKGLLI 561

Query: 670 KVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN---GDFI--FSV 723
             + D G   S  AD  R+LQ+ + ++ NA+ F+  G  V ++ + +N   G     F V
Sbjct: 562 YGLCDVGVPSSVRADSARILQVLNNLVGNAVKFTEAG-RVAVRVSAENLQPGRIRLKFQV 620

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I  +    +F  +       +    G GLGL+I     +L GG +S+ S     
Sbjct: 621 ADTGVGIRAEAQAQLFEPYFRADASAKEDISGSGLGLAICRRLSDLMGGSLSVVSEKGLG 680

Query: 782 T--TINCRI 788
           T  T    +
Sbjct: 681 TSITFAVTL 689



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 35/146 (23%)

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-NRYLQFHNRSFVELWEIDLAFLATN 349
           +A  + +   + D L    +I+    V +++  + +  L   N +   L +         
Sbjct: 339 VAPALRQYAALVDSLALNNKIIEVAPVGLSLVRRSDGRLLVSNDAARRLLD--------- 389

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP- 408
                                  +W+E+I      + + +    L +G+++ +   S P 
Sbjct: 390 --------------------EHDSWREDIRQATTRAGSRECE--LRDGRSVILTFASMPY 427

Query: 409 --RGGTIWMFENLTVQVDLETKYNTL 432
                 I    ++TVQ ++E    + 
Sbjct: 428 QSEDVVICGISDITVQKEVERSLRSA 453


>gi|270263222|ref|ZP_06191492.1| aerobic respiration control sensor protein ArcB [Serratia odorifera
           4Rx13]
 gi|270042910|gb|EFA16004.1| aerobic respiration control sensor protein ArcB [Serratia odorifera
           4Rx13]
          Length = 815

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 144/378 (38%), Gaps = 18/378 (4%)

Query: 419 LTVQVDLET----KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           LT +++       +      +    +D   + V     D      N A   L    E +L
Sbjct: 140 LTEEMEQRELAQIELGQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLTGKSEKQL 199

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T     +   +    E+D       +  +++       G       +  E   +P  
Sbjct: 200 IGLTPFDVYSQEIAEKVIETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFY 254

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +       +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L
Sbjct: 255 DRVGKRHGLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRIL 312

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             +    LN +Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   +     L ++
Sbjct: 313 LDT---DLNDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFLADL 369

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +           ++  +     L    + D  RL QI   ++ NA+ F+  G  V+    
Sbjct: 370 ENLSGLLAQPKGLQFVMEPQSPLPQQIITDGTRLRQILWNLIGNAVKFTPHGQIVVRVRR 429

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGG 770
            +    +F V+++G  IP+D    +F  +             G G+GL++ +      GG
Sbjct: 430 EEQDRLVFEVEDSGMGIPQDEQDKIFAMYYQVKDQHGGRPATGTGIGLAVSKRLAQSMGG 489

Query: 771 HVSISSSDEGVTTINCRI 788
            +++SS     +     I
Sbjct: 490 DITVSSVQGHGSCFTLTI 507



 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 19/155 (12%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R   +D +  E+ +  L   +L    ++ +   D+   LV++R++  +    N + +  T
Sbjct: 133 RQQVMDKLTEEMEQRELAQIELGQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLT 192

Query: 227 ETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYK 278
              G   ++ IG     ++ +EI +++I +   EK F   VS           G    ++
Sbjct: 193 ---GKSEKQLIGLTPFDVYSQEIAEKVIETD--EKVFRHNVSLTYEQWLVYPDGRKACFE 247

Query: 279 I------VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +       RV    G  G   D+++     D L +
Sbjct: 248 LRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 282


>gi|229515046|ref|ZP_04404506.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae TMA 21]
 gi|229347751|gb|EEO12710.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae TMA 21]
          Length = 1176

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 522 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 575

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 576 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 633

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 634 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 690

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 691 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 750

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 751 VIWSPNSLLLANFDSLRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 809

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 810 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 869

Query: 788 IPS 790
           +P 
Sbjct: 870 LPL 872



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 501 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 556


>gi|238483287|ref|XP_002372882.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
 gi|220700932|gb|EED57270.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
          Length = 1943

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            T      K       L+    +E S      A    T  ++ D    ER L +  + L  
Sbjct: 1173 TEIRLRSKGADFRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNN 1232

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              E K  F  ++S+E+R+PL  I+G    +  +    L++ Q + ++ I  SST L  LV
Sbjct: 1233 QMESKTKFFSNMSHEIRTPLNGILGTIPFILDTH---LDTDQRRMLDTIQNSSTNLRELV 1289

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
            ++ILD++ V+AG M L  S   +  ++ +V  +++++  +  + I  + D       + D
Sbjct: 1290 DNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVSSRAIDKGLEINYLMDVDVPPMVIGD 1349

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----------VKNNGSSIPED 733
            R R+ Q+   ++ NA+ F+S+G  + ++ + ++G    S          V + G      
Sbjct: 1350 RFRIRQVLINLVGNAVKFTSQGE-IHIRCSINHGTATLSKETELLLNFDVVDTGKGFSAR 1408

Query: 734  MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              + +  RF         Q  G GLGL + +  + +HGG ++ SS +      +  
Sbjct: 1409 DAERLMQRFSQLGQNGSQQHAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGAKFSFY 1464


>gi|114570424|ref|YP_757104.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114340886|gb|ABI66166.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 575

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+A   L  K+E   +A  +K+ F+  VS+E+R+PL  ++G   +L     GSL   Q
Sbjct: 182 QMVQAAIELQRKSEQAEEATRVKSEFLATVSHEIRTPLNGVLGMARVLDD---GSLRPDQ 238

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S  V+ I+ S  +LL+ +ND+LDL+ ++ G+M +      L  ++N V Q       E +
Sbjct: 239 SDQVQAITRSGEVLLSTLNDVLDLSRIEEGLMVVETRPFDLPAMINGVAQLYVITAAEKS 298

Query: 667 IRIKVISDGKLGSF---VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFS 722
           +   +     L      V D  R+ QI   +LSNA+ F+++G   +++       D  F+
Sbjct: 299 VEFFIEISPDLDLTQKRVGDENRITQILHNLLSNAIKFTAEGRVDLVVSPGETPSDIRFT 358

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  + E   + VF RF        R   G GLGL I      L GG + + S    
Sbjct: 359 VRDTGIGMSEAEVRRVFERFTQADQSTSRKYGGSGLGLCIASQLATLMGGRIDVQSEPGV 418

Query: 781 VTTIN--CRIPSKE 792
            +      ++P+ +
Sbjct: 419 GSCFTASLKLPAHD 432


>gi|90579698|ref|ZP_01235507.1| probable sensor/response regulator hybrid [Vibrio angustum S14]
 gi|90439272|gb|EAS64454.1| probable sensor/response regulator hybrid [Vibrio angustum S14]
          Length = 669

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 116/261 (44%), Gaps = 22/261 (8%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             R L E+   L +A +IK  F+ ++S+E+R+P+  ++GF   L+   L   + +Q  Y+
Sbjct: 258 LNRKLREQANDLSEAIKIKAEFMANMSHEIRTPMNGVLGFVQCLEERNLDQESQRQIGYI 317

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                S+  LL ++N+ILD + +++G ++L+ +   L   ++        +     I++ 
Sbjct: 318 ---KESAYSLLVIINEILDYSKLESGNVELHMTAFNLKPFVHSCATPFIHQAKIKKIQLS 374

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------------- 716
               +G   SF AD  RL QI   ++ NA+ F+  GS  ++   RD              
Sbjct: 375 TEIGEGLADSFTADEGRLRQILINLIGNAVKFTHTGSVKLVVEKRDPPEQQCEELKKYND 434

Query: 717 ---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
                  F VK+ G  I E+    +F+ +         Q  G GLGLSI  S   L    
Sbjct: 435 KHIQWLRFKVKDTGIGIAEEKLAFIFDSYTQADGSISRQFGGTGLGLSISNSLCRLMSAK 494

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S+    T     IP K+
Sbjct: 495 LQVDSTIGNGTEFWFDIPLKQ 515


>gi|218281107|ref|ZP_03487650.1| hypothetical protein EUBIFOR_00209 [Eubacterium biforme DSM 3989]
 gi|218217660|gb|EEC91198.1| hypothetical protein EUBIFOR_00209 [Eubacterium biforme DSM 3989]
          Length = 806

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 159/386 (41%), Gaps = 29/386 (7%)

Query: 427 TKYNTLVKVQGETIDHLSE---GVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            K   ++++Q E I+ +S+    V +   D G+I     A  +  +  +   S       
Sbjct: 273 RKKENVLELQREIIEGISKDYFSVLLVELDQGQIYSYREAGSNGKRIADFCRSYHDRWTE 332

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLELLSDSVLEYSIIPL------ 533
           +    ++        + F   + SF+  + +      T E +SD  + Y    +      
Sbjct: 333 LLPAYAKDLVSDASRENFLEEL-SFEKLKSTNEDYSFTYEYMSDEGVLYYQARVSYVKKK 391

Query: 534 -PNAQTMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                 ++   ++ D ++ ER     L +       A + K +F+ ++S+++R+P+  I+
Sbjct: 392 DRTRAVVIGTRDIDDLIQKERLQKEQLRKAYIQAENASKAKTNFLNNMSHDIRTPMNVIL 451

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+  L+K      +      Y + I  S  +LL+++ND+L++A +++G   L  S+  + 
Sbjct: 452 GYNQLMKKQLTDPV---LVDYQKKIEQSGNLLLSIINDVLNMARIESGKSVLVESSESIV 508

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           D++ EV         E  I      D K    + D  ++ +I   ++ NA+ ++  G  V
Sbjct: 509 DMVEEVSNVFGAMAKEKEIVFDTKMDIKHKQVLCDCTKVKEILVNLIGNAIKYTPNGGHV 568

Query: 709 ILKAARDN------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +            G +   + + G  + E    ++F+ F   A      G GLG+ IV+
Sbjct: 569 TVDIKEFECSKEGYGTYQIQIIDTGIGMSESFIPTLFDAFTREATSDII-GTGLGMPIVK 627

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
             +++ GG + + S     +T    I
Sbjct: 628 KLVDMMGGTIDVESVLGKGSTFTITI 653


>gi|126660737|ref|ZP_01731835.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cyanothece sp. CCY0110]
 gi|126617978|gb|EAZ88749.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cyanothece sp. CCY0110]
          Length = 391

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 168/391 (42%), Gaps = 14/391 (3%)

Query: 398 QTLHVIVTSNPRGGTIWMFENL------TVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           Q L V++  N +G  + +  +L          +++++   +  ++  + + +  G  +  
Sbjct: 3   QALKVLIIDNDQGNRLAIQRSLEPIVPSLELTEVKSRRKAISLLKRNSFNCVFLGYLLSD 62

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
             G   L     + +       +   +  R IA    + + +S  WD     + S D   
Sbjct: 63  TTGVSLL--KELQEMGIEIPLIVLTPSENRRIA----QEFMKSGAWDYIVESMISPDVLL 116

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           K+L+ ++ +        SI         +      +  + ++ +  KN  L++A   ++ 
Sbjct: 117 KTLKNSMRIHKAEKELNSINQQLRENNEVLKQKNEELKQQQKQIHLKNLQLQEASRRQSQ 176

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+P+  I+GF+ LL       L+S+Q+  V+ I  +S  LL L+N++LD +
Sbjct: 177 FLATISHELRTPMNAIMGFSQLLLRQYPDPLSSQQTDIVQRIFNNSQNLLTLINEVLDYS 236

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++   M L      L+ L+    + ++      ++ + V  +        D+  L +I 
Sbjct: 237 KLNTDQMDLTVEEFDLSMLVQFTIKELSCLTINKDLTLNVDVNLSNPLIFNDKNFLRRIL 296

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RG 749
             +LSNA+ F+  G   +     ++      V++ G  I ++  KS+F+ F         
Sbjct: 297 INLLSNAIKFTPTGHIEVKVWEMNSQKIAIRVEDTGIGIAQEHLKSIFSPFQQVDQTLTR 356

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           Q  G GLGL+IV S I +  G + ++S    
Sbjct: 357 QHSGTGLGLAIVHSLIKMMEGEIHVTSELGK 387


>gi|330686045|gb|EGG97668.1| sensor protein SrrB [Staphylococcus epidermidis VCU121]
          Length = 498

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 168/421 (39%), Gaps = 44/421 (10%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKV 435
            I    +            +   +  + T +  G     F N++ ++       +T   +
Sbjct: 115 RITKPLRELRNQAQKVSQGDYSHITSVSTKDEIGELSRAFNNMSFEIQEHVEALSTSKNI 174

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS--PGTHIRNIAATCSRYYNE 493
           +   I+ + EGV        I LSN     ++ T ++         I     T    + E
Sbjct: 175 RDSLINSMVEGVIGINEQKDIILSNKMADQVFYTLDDNAVELIENQIEQTFNTKETQFQE 234

Query: 494 SDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            +    +  II S+ +  ++    G + ++ D   E+++                     
Sbjct: 235 IEANTRYYVIIMSYIERIQNDGRSGIVAIIRDMTNEHNL--------------------- 273

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
                         D++K  F+ +VS+ELR+P+  + G+T+ +    +   + +  + + 
Sbjct: 274 --------------DQMKKDFIANVSHELRTPIALLQGYTESIVDGVVTEPD-EIHESLA 318

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +   S  L  LVN++L++A +DA  + +   T  ++DLLN+++     +  +  + ++ 
Sbjct: 319 IVLDESKRLNRLVNELLNVARMDAEGLSVEKETQPISDLLNKMRIKYRQQATDLELNMQF 378

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             + +      D  R+ Q+ + ++ NA  ++  G T+ +    DN   I  + + G+ I 
Sbjct: 379 EVNNQQLWNY-DMDRMDQVLTNLIDNASRYTQPGDTISVTTDEDNSYNILRITDTGTGIA 437

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  + VF+RF       +R   G GLGL I +  I  HGG + + S     TT   ++P
Sbjct: 438 PEHLQQVFDRFYKVDASRKRGKQGTGLGLFICKMIIEEHGGIIEVESQVGEGTTFIIKLP 497

Query: 790 S 790
            
Sbjct: 498 K 498


>gi|301308440|ref|ZP_07214394.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300833910|gb|EFK64526.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 659

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 127/237 (53%), Gaps = 8/237 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  +   +AD +K++F+ ++++E+R+PL  I+GF+ +L   +       + ++ + I
Sbjct: 424 QLKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEED---RETRQEFADII 480

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++ +L  L+ D+LDL+ +++  M L Y    +  L+ E+   I  +MHE  + +++  
Sbjct: 481 QNNNELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHE-GVELEL-Y 538

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D +      DR RL QI + +L+NA+  + +GS +     R      F V+++G  IPED
Sbjct: 539 DCEELVMETDRNRLTQILTNLLTNAIKHTQEGS-IRFGYKRSALSVEFFVQDSGEGIPED 597

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              ++F+RFV   +    +GVGLGL+I +  +   GG++ ++S     +     +P 
Sbjct: 598 KIDTIFSRFVQLDNWS--KGVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLPL 652


>gi|237644063|emb|CAY85453.1| histidine kinase 1 [Claviceps purpurea]
          Length = 1335

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  
Sbjct: 711 QRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNI 767

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +   
Sbjct: 768 VNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTVFNALKTLAVKANEKFLDLTYK 827

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSV 723
            D  +    + D  RL QI   ++ NA+ F+  G   +    R N            F V
Sbjct: 828 VDSSVPDHVIGDSFRLRQIILNLVGNAIKFTEHGEVSLTIKERANQQDVGGGEYSIEFIV 887

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG + + S     
Sbjct: 888 EDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGDLWVLSEAGKG 947

Query: 782 TTINCR 787
           +  +  
Sbjct: 948 SQFHFT 953


>gi|126660024|ref|ZP_01731146.1| drug sensory protein A [Cyanothece sp. CCY0110]
 gi|126618702|gb|EAZ89449.1| drug sensory protein A [Cyanothece sp. CCY0110]
          Length = 678

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 160/402 (39%), Gaps = 25/402 (6%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLS----EGVAVFGPDGRIKLSNPAFR 464
           G  I+ F  +  +++  E +    +  +   +D L     +G  +   D  + L NP  R
Sbjct: 247 GELIFSFNEMAKRLERYEEQNIEELTAEKAKLDTLVSTIVDGAILLDTDLNLLLVNPTAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++   E +   G +I  +         ++    +     T   +           +   
Sbjct: 307 RMF-IWEGKDVIGKNILELLPEELTAQLQTPLEQMVQQNATESPETEPEKTTETTSIQQK 365

Query: 525 V--LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR------KADEIKNSFVQHV 576
           +   EY I        ++  +      +    L      ++      + +E K+ F+ +V
Sbjct: 366 INPGEYRISLSQPTSRIVRVLLTQVFDQHRGTLKGIAMTVQDITREVELNEAKSQFISNV 425

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL NI  F + L         +++ +++E  +  +  L +LVND+LDL+ +++ 
Sbjct: 426 SHELRTPLFNIKSFIETLSEFGEDLTETERKEFLETANHETDRLTHLVNDVLDLSRLESS 485

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
               +   + L+ L+ +  ++      +  + +    +  L   +     LLQ+ + ++ 
Sbjct: 486 K-TYHLDGVDLSQLIEQTLRTCQLNARDKELVLNKEVEANLPLVLGHYDLLLQVMTNLVG 544

Query: 697 NAMDFSSKGSTVILKAAR---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           NA+ F+  G  ++++A           D       + + G  I  +   ++F+RF    +
Sbjct: 545 NALKFTPPGGIIMIRAYHFKTKSKQFNDKSCVRVEISDTGIGIAAEDQAAIFDRFFRVEN 604

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           R     G GLGLSIV++ I+ H   + + S     TT    +
Sbjct: 605 RVHTLEGTGLGLSIVKNIIDKHHSQIHLISEVGIGTTFWFDL 646


>gi|86747539|ref|YP_484035.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris HaA2]
 gi|86570567|gb|ABD05124.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 649

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 10/262 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTD 592
           A       +  +  R      ++ +A R+ +     K+  +   S+E+R+PL  IIG + 
Sbjct: 97  ADRNWELRDAEERARVLHQARDEADAPRRDEDATRRKSRLLAMASHEIRTPLNGIIGMSG 156

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL  +   +L  +Q+ Y   +  S   L  L++++LD + ++AG  +L+     L  L+ 
Sbjct: 157 LLLDT---ALTPEQATYARAVKTSGDALATLIDELLDYSRIEAGRFELDSRPFALTALIE 213

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-IL 710
           ++ + +A +     + I    D ++ S  + D  RL Q+   +  NA+ F+S G  V I+
Sbjct: 214 DIVELLAPRAQAGALEIAADIDDRVPSRVIGDAARLRQVLLNLAGNAIKFTSVGGVVLIV 273

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
           +    +G+  F+V++ G  I  +    +F  F            G GLGLSI +  +   
Sbjct: 274 QPGERDGEISFAVRDTGIGIAREAQTRIFGEFEQADDGIARSFGGTGLGLSISQRIVERM 333

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG +++ S     +T    IP 
Sbjct: 334 GGRIALDSQPGRGSTFTASIPL 355


>gi|148254922|ref|YP_001239507.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407095|gb|ABQ35601.1| putative sensor histidine kinase with a response regulator receiver
           domain [Bradyrhizobium sp. BTAi1]
          Length = 729

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  L    +A       ++ F+  +S+E+R+P+  +IG            L  +Q + 
Sbjct: 321 RYQAGLAASRDAAEAGTRARSEFLAMMSHEIRTPMNGVIGLA---DLLLSADLAPEQRKI 377

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              +  S+  LL L+ND+LD + +DA  +++ +    L+  +    + + ++  E  +++
Sbjct: 378 ATTLRESADYLLQLLNDVLDFSKLDADRLEIEHIEFDLHRSVTATAELLVSRAKEKGLQL 437

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVK 724
                  +    V D  RL Q+   ++ NA+ F+  GS  + ++A    G     +FSV 
Sbjct: 438 TTSIAPDVPNYVVGDPARLRQVLFNLVGNALKFTEAGSVNIDVRAENLAGPNLTLVFSVA 497

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +    +F +F    +   RR  G GLGL+I +  +   GG + + S     +
Sbjct: 498 DTGVGIPAEAVGRLFRQFSQVDNSISRRFGGTGLGLAICKRLVTCMGGDIKVQSKIGEGS 557

Query: 783 TINCRI 788
           T    I
Sbjct: 558 TFTFSI 563


>gi|269139680|ref|YP_003296381.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|267985341|gb|ACY85170.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|304559549|gb|ADM42213.1| Two-component sensor protein RcsC [Edwardsiella tarda FL6-60]
          Length = 956

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 157/366 (42%), Gaps = 31/366 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN                  +I      
Sbjct: 354 RLEEHEQFNRKIVASAPVGISILRTRDGSNILSNELA-------------HNYISQFTPE 400

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             +        +   +++     + ++LQ +         + +I            V+V+
Sbjct: 401 DRQRITRI-ICEEPVSVLDVITVQNQNLQISFVRSRYRNEDVAI---------CAMVDVS 450

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    +L  + 
Sbjct: 451 ARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK---TLPEEV 507

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  +S SS +LL ++NDILD + +++  +K+     V  +++  +  +    +    
Sbjct: 508 QRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGNYLPLVVRKR 567

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +      D  R+ Q+ S +LSNA+ F+  G  +IL+A  ++    F V++
Sbjct: 568 LTLYCFIEPDVPEALSGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVNDFYLEFRVRD 626

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       QR   G GLGL+I E  ++L  G +++ SS    + 
Sbjct: 627 TGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAVESSPGLGSI 686

Query: 784 INCRIP 789
              R+P
Sbjct: 687 FTIRLP 692


>gi|160884384|ref|ZP_02065387.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483]
 gi|156110123|gb|EDO11868.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483]
          Length = 660

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 128/259 (49%), Gaps = 11/259 (4%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T     +      +E  L +  E   +A+++K++FV ++S+E+R+PL  I+GF+ L+  S
Sbjct: 403 TKQLREDKKKLEESEVELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLIIGS 462

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                N++  +Y + +  +S +LL L++D+LD++ +++G ++  Y      +L+N  +  
Sbjct: 463 VEQ--NNELKEYADIVQTNSNLLLQLISDVLDISRLESGKLQFKYEWC---ELVNHCQNM 517

Query: 658 IATKMHEN--NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           I         ++ IK+    +      D  RL QI   +L+NA+ F+  G ++ L    D
Sbjct: 518 ITLTNRNKTMDVDIKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVD 577

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 +FSV + G+ IPED  + VF RF       Q  G GLGL+I +  I   GG + 
Sbjct: 578 EEKQCMLFSVTDTGTGIPEDKQELVFQRFEKLNEFVQ--GTGLGLAICKLTIQYMGGDIW 635

Query: 774 ISSSDEGVTTINCRIPSKE 792
           I  + +         P K+
Sbjct: 636 IDKNYKNGARFIFSHPIKK 654


>gi|325921438|ref|ZP_08183294.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548080|gb|EGD19078.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 291

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 124/238 (52%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL++I+  T LL+    G LN++QS+ V ++
Sbjct: 43  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLSSILSITRLLEDGMDGPLNAEQSKQVRFV 102

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           SAS+  L  +V+D+LDLA ++AG + ++     L DL + ++          +  +    
Sbjct: 103 SASARELTEMVDDLLDLAKIEAGRIAISPGWFDLMDLFSALRGMFRPLTDAGSTTLIFED 162

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP +
Sbjct: 163 PPALPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIPAE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++F  FV      Q+R  G GLGL+I + F  L GG V I+S     +     +P
Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLAICKRFAELLGGRVGINSVVGEGSEFFVVLP 280


>gi|289670378|ref|ZP_06491453.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 291

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 43  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 102

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S+  L  +V+D+LDLA ++AG + ++     L DL   ++             +    
Sbjct: 103 SGSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDTGKTMLVFDD 162

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  I  +
Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIAAE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++F  FV      Q+R  G GLGLSI + F  L GG V ++S     +     +P
Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGVNSVPGQGSEFYVVLP 280


>gi|84685778|ref|ZP_01013674.1| hypothetical protein 1099457000261_RB2654_13705 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665871|gb|EAQ12345.1| hypothetical protein RB2654_13705 [Rhodobacterales bacterium
           HTCC2654]
          Length = 534

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 161/384 (41%), Gaps = 9/384 (2%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANIS 221
             A + + S     +E+         L+  +   +   D   F +W  D +G I W N +
Sbjct: 121 GLARITLTSTGVDDTEIGPDKYAVAALNRELDTLRAATDRTPFPIWQEDASGVITWCNRA 180

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           Y    ++     Q       +LF     +   SS A  +     ++         +++  
Sbjct: 181 YLDLADSMEEGGQSYKWPPTRLFAGPTAED--SSDAESRRERMALTPTGEETRHWFEVET 238

Query: 282 VLNSFGEAGIAID----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            LN  G+   AI     V  E++  + +T   +   +L + +AIF ++R L   N + ++
Sbjct: 239 RLNGDGQICTAIPADDLVKAEVSRTEFVTTLSKTFASLPIGLAIFSRSRELAMFNPALLD 298

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE--THKDTWHLP 395
           L  + + FL + PS    L+ LR    +PE  ++K+W++ I  +  ++   T++++W LP
Sbjct: 299 LTTLPVDFLVSKPSLAAFLDRLREMQMMPEPKDYKSWRQRISDLVDAARNGTYEESWTLP 358

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            GQT  V    +P G   ++FE+++ ++ L  +Y   ++    T+D L   +AVF   G 
Sbjct: 359 GGQTYRVTGRPHPDGAVAFLFEDISAEIGLARRYRAEIETAQATLDALPSAIAVFSTSGV 418

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
           + LSN  +  LW  E+        I             S  WD     +      R++++
Sbjct: 419 LTLSNSHYAGLWVPEDGSDPSTMPIYEAVELWREAALPSAVWDQIKGAV-GHAGPRETVE 477

Query: 516 GTLELLSDSVLEYSIIPLPNAQTM 539
             + L     L   ++PLP   T+
Sbjct: 478 TGISLKDGRSLICRVVPLPRGFTL 501



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 107/305 (35%), Gaps = 36/305 (11%)

Query: 139 QSFDLVAETQNDCAI-KIEGRVSGSCAFLRILSLDG-IYSELAETTLKCKKLSNHISVFK 196
           +   L    +      ++E R++G       +  D  + +E++ T          ++   
Sbjct: 219 ERMALTPTGEETRHWFEVETRLNGDGQICTAIPADDLVKAEVSRTEF--------VTTLS 270

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
             F SL   +    ++ ++   N +    T T  + F  +            + +M+   
Sbjct: 271 KTFASLPIGLAIFSRSRELAMFNPALLDLT-TLPVDFLVSKPSLAAFLDRLREMQMMPEP 329

Query: 257 ALEKNFCETVSTLEHGNN-------------KSYKIVRVLNSFGEAGIA-IDVSKEITVN 302
              K++ + +S L                  ++Y++    +  G       D+S EI + 
Sbjct: 330 KDYKSWRQRISDLVDAARNGTYEESWTLPGGQTYRVTGRPHPDGAVAFLFEDISAEIGLA 389

Query: 303 DQLTHTYEI----LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
            +     E     L  L  AIA+F  +  L   N  +  LW  +     +     E +E 
Sbjct: 390 RRYRAEIETAQATLDALPSAIAVFSTSGVLTLSNSHYAGLWVPEDGSDPSTMPIYEAVEL 449

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSS--ETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
            R A  LP  +    W +   +V  +   ET +    L +G++L   V   PRG T+  F
Sbjct: 450 WREA-ALPSAV----WDQIKGAVGHAGPRETVETGISLKDGRSLICRVVPLPRGFTLIEF 504

Query: 417 ENLTV 421
             +T 
Sbjct: 505 AQVTA 509


>gi|318604060|emb|CBY25558.1| aerobic respiration control sensor protein arcB [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 778

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 144/371 (38%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      
Sbjct: 313 LDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTSFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    + D  RL QI   ++ NA+ F+ +G  V+      N   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQGEIVVRVRRESNDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +             G G+GL++ +      GG +++ S 
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKSV 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGAGSCFTLTI 503



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|300856127|ref|YP_003781111.1| putative Signal transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300436242|gb|ADK16009.1| predicted Signal transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 600

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 146/363 (40%), Gaps = 27/363 (7%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
                    +  +SEG+     +  I   N +   L   +        +   +       
Sbjct: 256 EEKTKLSNVLTSMSEGILSLDTNFHIININHSTLELLSLKNIESDTKVNEILLNLNIIEE 315

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           +N +   D   + +  + ++              VL +SI P+ N    +    +     
Sbjct: 316 FNFTISNDTKKSTVKEYLNK--------------VLNFSISPIKNNLNQVIGGVILIQDV 361

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           +E+          K ++++  F+ +VS+E R+PLT I G  + +                
Sbjct: 362 SEKE---------KLEQMRKDFISNVSHEFRTPLTVIKGNLESIVDGITQP--ECIQDTC 410

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             +   +  L  +V D+L+L+ +++G ++++++ + +N L+N+  +SI   +   +I ++
Sbjct: 411 ITLLNETNRLERMVKDLLNLSKLESGKLEIDFNELDINMLVNDTIRSIKPLIDAKSIDLQ 470

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +     L    +D  +L Q+    L N + FS     + + +  DN +   ++++NG  I
Sbjct: 471 LSLQNNLPPLFSDYDKLKQLLIIFLDNGIKFSQNKGKLKISSCSDNENICITIEDNGIGI 530

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PED  + +  +F            G GLGLSI +  + +  GH SI S     T I    
Sbjct: 531 PEDEIQYLGEKFFKADKSRTSNAGGTGLGLSIAKRLVKVLNGHFSIESELTKGTRITISF 590

Query: 789 PSK 791
           P+K
Sbjct: 591 PAK 593


>gi|297579232|ref|ZP_06941160.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC385]
 gi|297536826|gb|EFH75659.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC385]
          Length = 1178

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/363 (24%), Positives = 151/363 (41%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 524 EQQRWLTELLDAIPSMIFISDEKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 577

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 578 LMLPDQHEAEFSIIIQAPKSNCSIDEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 635

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 636 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 692

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 693 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAKLKEIEFD 752

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V + G  
Sbjct: 753 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVDDTGCG 811

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +    S+F  FV       RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 812 MTQTQIDSLFVPFVQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 871

Query: 788 IPS 790
           +P 
Sbjct: 872 LPL 874



 Score = 41.1 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 56/160 (35%), Gaps = 24/160 (15%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE--IDLAFLATNPSNDELLEFLR 360
           +Q     E+L  +   I I D+   +   N ++ +++    +   +   P    L     
Sbjct: 524 EQQRWLTELLDAIPSMIFISDEKGEVVLTNAAYRKIYHTCCEKGCVQPQPECSFL----- 578

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT--SNP---RGGTIWM 415
               LP+Q            + ++ +++       +    HV     S+P   R   + +
Sbjct: 579 ---MLPDQHE-----AEFSIIIQAPKSNCSI----DEHYFHVTRRAISHPINQRKYYLTL 626

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
           F ++T   + E       +   + ++  +  +AV   + R
Sbjct: 627 FNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELR 666



 Score = 38.0 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +        L D++  +++  D+ G+++  N +Y+K
Sbjct: 503 LSLSRLRGKLRSSEQVAKLSTEQQRWLTELLDAIPSMIFISDEKGEVVLTNAAYRK 558


>gi|228952378|ref|ZP_04114464.1| hypothetical protein bthur0006_17820 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229069549|ref|ZP_04202838.1| hypothetical protein bcere0025_17540 [Bacillus cereus F65185]
 gi|229079180|ref|ZP_04211728.1| hypothetical protein bcere0023_18390 [Bacillus cereus Rock4-2]
 gi|229190105|ref|ZP_04317109.1| hypothetical protein bcere0002_17750 [Bacillus cereus ATCC 10876]
 gi|228593328|gb|EEK51143.1| hypothetical protein bcere0002_17750 [Bacillus cereus ATCC 10876]
 gi|228704106|gb|EEL56544.1| hypothetical protein bcere0023_18390 [Bacillus cereus Rock4-2]
 gi|228713688|gb|EEL65574.1| hypothetical protein bcere0025_17540 [Bacillus cereus F65185]
 gi|228807295|gb|EEM53828.1| hypothetical protein bthur0006_17820 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 443

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 122/238 (51%), Gaps = 5/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       +  Q +  
Sbjct: 211 HSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEIKQGMGI 269

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  I+    
Sbjct: 270 ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITT 329

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D      + DR RL Q+F  I+ NA+ +S + ST+ ++A +  G  +  V++ G  I +
Sbjct: 330 IDR--IELMGDRNRLKQVFLNIVQNAIKYSHEKSTIHIEATKIEGQAVIKVRDEGIGIAK 387

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  ++P 
Sbjct: 388 EHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLPL 443


>gi|222056644|ref|YP_002539006.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565933|gb|ACM21905.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 737

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 149/376 (39%), Gaps = 20/376 (5%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +++        K     ++ + + +A+     RI+  NPA  S      ++L  G     
Sbjct: 365 MEMADNLRAGEKRFRLALESIPDMIAICDQQLRIQYVNPATISATGLPSSKLV-GRLDSE 423

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----Q 537
           I     + +       L  A + + + E  S +G+           + +PL        +
Sbjct: 424 IWPELYKLWRPVLEKALETAKVQNLELELPSPKGS------RHFHVTYVPLMEEDGHVKE 477

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            M    + T   +AE  L    E L +++     F    S++L+ PL  +  +  LL   
Sbjct: 478 LMGITHDYTVRKQAEDELKRTLEELIRSNRDLEQFAYVASHDLQEPLRMVASYVQLLDKR 537

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G L+ K  +Y+ Y    +  +  L+ D+L    ++     + +  + LN +  E  ++
Sbjct: 538 YRGQLDQKADRYINYAIQGAKRMQTLIEDLLAYGRINR---VVEFQQVDLNLVCAEAVKA 594

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARD 715
           + T + E+   ++      L     D+ +L  +F  ++ NA+ +  +     V++ A + 
Sbjct: 595 METAISESGGAVQ---AADLPVVWGDKIQLFILFQNLIGNAIKYRRQDVQPLVLISARQT 651

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
              ++ SV++NG  I +     +F  F     R +  G G+GL+     +  HGG + + 
Sbjct: 652 EDAWVISVQDNGIGIEKQYFDRIFQIFQRLHAREEYPGTGIGLASCRKIVERHGGRIWVE 711

Query: 776 SSDEGVTTINCRIPSK 791
           S     +T    IP +
Sbjct: 712 SMPGNGSTFFFTIPDR 727



 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 20/148 (13%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           +     +          L ++   IAI DQ   +Q+ N + +    +  + L     + E
Sbjct: 365 MEMADNLRAGEKRFRLALESIPDMIAICDQQLRIQYVNPATISATGLPSSKLVGR-LDSE 423

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN---GQTLHVIVTSN--PR 409
           +   L           +K W+  +    ++++       LP+    +  HV         
Sbjct: 424 IWPEL-----------YKLWRPVLEKALETAKVQNLELELPSPKGSRHFHVTYVPLMEED 472

Query: 410 GGT---IWMFENLTVQVDLETKYNTLVK 434
           G     + +  + TV+   E +    ++
Sbjct: 473 GHVKELMGITHDYTVRKQAEDELKRTLE 500


>gi|283851135|ref|ZP_06368419.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573531|gb|EFC21507.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 886

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 105/547 (19%), Positives = 192/547 (35%), Gaps = 72/547 (13%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQF-HNRSFVELWEIDLAFLATNPSNDELLE 357
             +++  +    +  N  V + + D +       N S    +      +           
Sbjct: 199 RRLSESESRYQSLFENNHVVMLLIDPDTGAVMDANPSACAYYGWSREEIKKKK------- 251

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--GTIWM 415
            +   N +  +      ++      + +        L +G    V V S P    G + +
Sbjct: 252 -VHEINMMAPEAVHAALQDAKT---RRNTAFHFRHRLADGGIREVEVNSGPILYLGRLLL 307

Query: 416 FE---NLTVQVDLETKYN----------TLVKVQGETIDHL-----SEGVAVFGP----- 452
           +    ++T +   E +             + +++  ++D L     +E   + G      
Sbjct: 308 YSVVIDVTDRRRAEDRLRLGEARLQSLFAITQMETSSLDTLLAHAVAEARRLTGSRLGRL 367

Query: 453 ------DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
                 +GR+ L   A  S        L  G    +     +          L A     
Sbjct: 368 FLQHEENGRLLL---AAESGDGACGAPLPGGPDASDPHGPWAEALRLRHPVVLPALTERG 424

Query: 507 FDDERKSLQGTL----ELLSDSVLEYSII----PLPNAQ-------TMLTFVNVTDSVRA 551
            + + +   G       + +D+V  + ++     + + Q        M     +    R 
Sbjct: 425 EESDCRQAPGEALCVPIVTNDAVAAFLVLAGKADVYDDQDIRLASLLMDAVWRMVARTRD 484

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L    EA   A   K+ F+ ++S+ELR+PL  I G   LL       L  +Q +YV+
Sbjct: 485 AGTLRAAKEAAETASRAKSEFLANMSHELRTPLNGIQGMAQLL---DGTDLTVEQKEYVD 541

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              AS   L  L+ DILDL+ V++G + L      L DL+  V  +      E  +    
Sbjct: 542 AALASCRRLTRLLGDILDLSRVESGKLGLVSEPFRLADLIASVSAAFEPACREAGVAWIT 601

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN----GDFIFSVKN 725
                +  +   D  R+ QI   +  NA+ F+  GS  + ++A   +    G  +F+V +
Sbjct: 602 DVARDVPETLWGDEGRMRQILCNLAGNAVKFTRAGSVRLEVRAGSRDAAGRGSVLFTVAD 661

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E+  + VF  F         + +G GLGL+IV   + L GG V + S     T 
Sbjct: 662 TGVGIAEEDLERVFEAFHQVERSFSRRFQGAGLGLAIVRRLVGLMGGVVVLESEVGRGTE 721

Query: 784 INCRIPS 790
             C +P 
Sbjct: 722 CVCALPL 728


>gi|302383089|ref|YP_003818912.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193717|gb|ADL01289.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 524

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 152/368 (41%), Gaps = 27/368 (7%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-----HIRNIAATCS--R 489
               D   + + +    G +   +P++ ++     + +         H  ++ AT    R
Sbjct: 22  DSFFDVSLDLLVIRDLRGIVVKVSPSWTAILGYRPSEIEGRPLLGLVHPDDLQATWDSVR 81

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                   D     I  +   +     TLE  +                     +VT+ V
Sbjct: 82  EVETRRAGDPVRGQINRYRH-KNGHYLTLEWRAQR---------RGQHIYGAARDVTERV 131

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            AE  L     A   A+  K+ F+ ++S+E+R+PL  +IG  D L  +    L   Q++ 
Sbjct: 132 AAEAELLAARAAAEAANRAKSDFLANMSHEIRTPLNGVIGIVDALSRT---GLEPAQAEM 188

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ I  S T L  LV+DILD++ ++AG + L      L D L      +  K  +  +  
Sbjct: 189 VDLIRDSGTTLERLVSDILDVSKIEAGKLDLELHAFDLEDALRGPIDVMRAKAADKGLAF 248

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVK 724
            V    ++ G+F+ D  RL Q+ + +LSNA+ F+++GS V+     ++ +       +++
Sbjct: 249 LVDIAPEVSGTFLGDSTRLKQVLTNLLSNAVKFTAEGSVVLTAWVTEDAEDQTFLSLTIQ 308

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G    E+    +F RF        RR  G GLGLSI  S + L GG +  SS     +
Sbjct: 309 DTGVGFDEEQAALLFGRFNQADSTITRRFGGTGLGLSICRSLMQLMGGEIDASSEPGVGS 368

Query: 783 TINCRIPS 790
                +P 
Sbjct: 369 RFCITLPL 376


>gi|170738932|ref|YP_001767587.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168193206|gb|ACA15153.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 1113

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 119/237 (50%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA   A+  K+ +V  +S+ELR+PL  ++G+  LL+     ++  ++   +  I 
Sbjct: 657 LQKAKEAAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLENDP--AIPPQRQSGIRVIR 714

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++L+ + + L D L+++      +     +  +    
Sbjct: 715 RSAEHLSGLIDGLLDISRMEAGRLQLHRNAVRLPDFLDQIVDMCRPQAEAAGLEFRFTRP 774

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   ++SNA+ F+++G  V L     N    F+V + GS IPE 
Sbjct: 775 AILPALVATDEKRLRQILLNLISNAIKFTARGH-VGLDLTYRNQIAEFAVTDTGSGIPEA 833

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  FV           G GLGL+I      + GG ++++S+    +T   R+
Sbjct: 834 DLPRIFEPFVRGTLPAATSTPGTGLGLTIAHLLAQVMGGEITVASALGRGSTFRLRL 890


>gi|117924790|ref|YP_865407.1| multi-sensor signal transduction histidine kinase [Magnetococcus
           sp. MC-1]
 gi|117608546|gb|ABK44001.1| PAS/PAC sensor signal transduction histidine kinase [Magnetococcus
           sp. MC-1]
          Length = 624

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 148/365 (40%), Gaps = 30/365 (8%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              ++    +  +++G+ V     R+ LSNP   +L    E          ++  T    
Sbjct: 252 RERRLLQGVLQGMADGLLVVDDHSRVVLSNPPAETLLGVGE---------EHVGETLQSV 302

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
            +      L   +         +L G++EL        ++     ++ +       +  R
Sbjct: 303 LSSQCYQQLSQVLQVE-----NNLPGSVEL--------TLTFGDESRFVQAQWTPMEGER 349

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS--Q 608
               +   N  LR+ ++I+  FV +VS+ELR+P++ +    + L     G+LN K    Q
Sbjct: 350 GYIIVFHDNTILRRQEQIRRDFVANVSHELRTPISILQANAETLLN---GALNDKAYGVQ 406

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I   +  L  +++ +LDLA +++  +      + ++ ++N V++ I     E NI 
Sbjct: 407 LVNAIERHAIRLSQIISKLLDLARLESNELIFKNEPLNISSIVNSVQEHITPLAQEKNIT 466

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
              +   ++     DR+ + ++ S ++SNA+ +   G  + +  +   G     V + G+
Sbjct: 467 CWSMIKPEVVCM-GDREAVEEVLSNLVSNAVKYIPAGEQISITCSELQGFNRIEVSDTGA 525

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I       VF RF            G GLGLSIV+  +   GG V + S +        
Sbjct: 526 GIDASHHSRVFERFYRVDKGRSRDMGGTGLGLSIVKQMVRKMGGDVGVESVNPHGCRFWF 585

Query: 787 RIPSK 791
            +P K
Sbjct: 586 TLPKK 590


>gi|298694775|gb|ADI97997.1| staphylococcal respiratory response protein B [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 583

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 159/397 (40%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 428 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +  A +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCAENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 583


>gi|239623884|ref|ZP_04666915.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521915|gb|EEQ61781.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1293

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 10/238 (4%)

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                     + K  F+  +S+E+R+P+  I G T + K   +     K    +E I +++
Sbjct: 902  MKSKADAVSKAKTDFLSRMSHEIRTPMNAISGMTTIAKN--VLDDREKTLDCLEKIESAN 959

Query: 618  TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GK 676
            T LL+L+NDILD++ +++G M+L+ S + L   ++ ++    T+  E ++ ++  +    
Sbjct: 960  TYLLDLINDILDMSRIESGKMELSTSPMDLRQQIDGLEALFRTQAEEKHLDMRFENRYSS 1019

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPE 732
                +AD  RL Q+   I+ NA+ F+ +G  + +K  +          FSV + G  I  
Sbjct: 1020 TRLLIADGLRLNQVLINIIGNAVKFTEQGG-ITVKVEQLEESPRAVLRFSVADTGIGIEP 1078

Query: 733  DMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 +FN F            G GLGLSI    + + GG + +SS     +     +
Sbjct: 1079 SALDRIFNAFEQAEAGTAASYGGTGLGLSIASRLVQMMGGTLEVSSQIGKGSEFFFTL 1136


>gi|83765604|dbj|BAE55747.1| unnamed protein product [Aspergillus oryzae]
          Length = 1937

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            T      K       L+    +E S      A    T  ++ D    ER L +  + L  
Sbjct: 1167 TEIRLRSKGADFRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNN 1226

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              E K  F  ++S+E+R+PL  I+G    +  +    L++ Q + ++ I  SST L  LV
Sbjct: 1227 QMESKTKFFSNMSHEIRTPLNGILGTIPFILDTH---LDTDQRRMLDTIQNSSTNLRELV 1283

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
            ++ILD++ V+AG M L  S   +  ++ +V  +++++  +  + I  + D       + D
Sbjct: 1284 DNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVSSRAIDKGLEINYLMDVDVPPMVIGD 1343

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----------VKNNGSSIPED 733
            R R+ Q+   ++ NA+ F+S+G  + ++ + ++G    S          V + G      
Sbjct: 1344 RFRIRQVLINLVGNAVKFTSQGE-IHIRCSINHGTATLSKETELLLNFDVVDTGKGFSAR 1402

Query: 734  MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              + +  RF         Q  G GLGL + +  + +HGG ++ SS +      +  
Sbjct: 1403 DAERLMQRFSQLGQNGSQQHAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGAKFSFY 1458


>gi|228958287|ref|ZP_04120013.1| hypothetical protein bthur0005_17960 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801368|gb|EEM48259.1| hypothetical protein bthur0005_17960 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 443

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 5/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       +  Q +  
Sbjct: 211 HSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEIKQGMGI 269

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  I+    
Sbjct: 270 ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITT 329

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I +
Sbjct: 330 IDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAK 387

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  ++P 
Sbjct: 388 EHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLPL 443


>gi|59713255|ref|YP_206030.1| hybrid two component sensor histidine kinase [Vibrio fischeri
           ES114]
 gi|59481503|gb|AAW87142.1| hybrid two component sensor histidine kinase [Vibrio fischeri
           ES114]
          Length = 575

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +    ++     FV  +++ELR+PL  ++G  +L++ ++   +   Q + +E I  S  
Sbjct: 203 KKRAESSERATRDFVAMINHELRTPLNGLLGSAELMEDTE---ITDYQKKLLETIHQSGQ 259

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +L  ++ND+LD + + AG+++L  +      L+  ++Q    +M E  +R  +     L 
Sbjct: 260 MLRIIINDLLDFSKMSAGMLELKMANFKPCILVKTIEQIFTPQMAEKCLRFDIHIADNLP 319

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            + + D  R+ QI   ++ NA  F+  G  + LK        +  V + G  IP+D  K 
Sbjct: 320 QTLMGDIDRVQQILVNLIGNAFKFTKSGH-ISLKVGWQKNALVLIVSDTGCGIPQDKQKL 378

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F    +  QR   G GLGLSI +  ++   G +S  S     +    ++P +
Sbjct: 379 LFEPFTQVDNSSQRQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEFQVKLPLE 434


>gi|312126426|ref|YP_003991300.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776445|gb|ADQ05931.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 357

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 6/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +      L+  +E++  F+ ++S+E+ SPLT+I GF   LK   L     ++  Y++ I 
Sbjct: 117 INNMAANLKAMEEMRQEFISNISHEIGSPLTSIRGFASALKNENLSF--EQRKHYLDIIE 174

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
                L  L  ++L L  +D+    L+ +T  L+  +         +  E  + I +  D
Sbjct: 175 NECIRLSKLSENLLRLTMLDSEQYPLHLTTYRLDKQIQLTILEFEPQWSEKELDITLSLD 234

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  AD+  L Q++  ++ NA+ F+ KG  + ++  +     I ++ + G  I E  
Sbjct: 235 E--IIITADQDLLKQVWQNLIDNAIKFTLKGGAIKIQLYKKETYAIVTISDTGIGISEQD 292

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +F RF        R   G GLGLSIV+  + LH G + ++S     T    ++P 
Sbjct: 293 LPRIFERFFKADKSRNRAVSGSGLGLSIVKKIVELHNGKIFVNSQLGKGTEFIIQLPL 350


>gi|294500028|ref|YP_003563728.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294349965|gb|ADE70294.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 460

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 118/235 (50%), Gaps = 6/235 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             ++L + +E++  FV +VS+E++SPL +I GF+  L+++ L   + ++++Y+  I   S
Sbjct: 229 MAKSLEQLEEMRQEFVSNVSHEIQSPLASIQGFSKTLRSAHLS--DEQRNEYLSIIEEES 286

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             + +L   +L LA++D     ++     +   + +V         E  + I++     +
Sbjct: 287 RRMSSLSKQLLTLASLDKESQNIDKIPFDVAAQIKQVLFMTEWSWREKELAIEMDLPSTM 346

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D++ L Q+++ +++N++ F+ +G T+ L+   ++       ++ G  + ++    
Sbjct: 347 --ISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRVQMEDTHCHVEFQDTGIGMSKESLPH 404

Query: 738 VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +FNRF     A        GLGL+IV+  + +HGG + + S     +T +  +P 
Sbjct: 405 IFNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKGKGSTFHVYLPK 459


>gi|288942026|ref|YP_003444266.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897398|gb|ADC63234.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 556

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 165/395 (41%), Gaps = 29/395 (7%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +  +      ++        L     V    G I  +N     +     +       +
Sbjct: 58  ELIQAQDHIALAMERYRRFFASLPMPAIVVDASGFIVETNEQACEVLGISRHVALQRGSL 117

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +    SR    S    +    +  +  E  +L+   E   ++  +  ++PL  +++  
Sbjct: 118 FQLFDFPSRTRLHSLMRTVLD--VGPYQLESMALKAGGE--GEASFDVHLMPLSESRSDG 173

Query: 541 TFVNVTDSVR-AERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTD 592
             + V    R AE+AL   +  L +A       +  K++F+ ++ +ELR+P+  +IG ++
Sbjct: 174 RQILVVLVDRSAEQALRALSHELIQAKLAAEQANVAKSAFLANMGHELRTPMNALIGLSN 233

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL      ++   Q  Y+  I  S+  L +L+NDILD + V++G ++L  + + L+++L+
Sbjct: 234 LLLDGS-EAMTPHQRDYLLKIHDSAAALSSLLNDILDYSKVESGYLRLESTPLNLDNILD 292

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG----ST 707
             +Q       E  +    +   ++   +  D  R+ Q+   ++ NA++F+ +G      
Sbjct: 293 RTRQLYMPCAEEKGLAFSCVRAPEVPPVLAGDPLRIQQVLDHLVDNAIEFTERGSVRVGV 352

Query: 708 VIL---------KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGL 756
           V++          AA +     FS+++ G  +  + C+++F  F        R   G GL
Sbjct: 353 VLVAAPARVASKTAAGERLVLRFSIEDTGIGLTPEQCQALFAPFQQADMSASRVHGGTGL 412

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           GLS+ +  + L  G + + S     +T    +P +
Sbjct: 413 GLSLCQRLVELMSGEIGVESRLGEGSTFWFTVPLR 447


>gi|182414367|ref|YP_001819433.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
           terrae PB90-1]
 gi|177841581|gb|ACB75833.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
           terrae PB90-1]
          Length = 401

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 154/374 (41%), Gaps = 29/374 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             E   +         +D + EG+ V    GRI   N A  +++      ++ GT +  +
Sbjct: 40  RFEETEHAQTARMEAMLDSMIEGLIVLDATGRIARVNEAAETMFG-MSRMMAGGTLLEAV 98

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL--PNAQTMLT 541
                R++  +      A    + + E +     +E     VL+ S++ L  P    + T
Sbjct: 99  -----RHHEVAALAARAAKEAKAIEQEIR-----IERPQPRVLQVSVVALRSPTGAEVGT 148

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +   D  R ++            + I+  FV +VS+ELR+PL+ I    + L       
Sbjct: 149 VLVFHDVTRLQQL-----------EAIRQDFVANVSHELRTPLSLIKSAAETLLDGGKND 197

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             +  ++++E I   +  L  L++D+L L+ +DA  ++L+  ++ L   + +      T 
Sbjct: 198 -PAVNARFLEIIDKHANRLSLLIDDLLTLSKLDAERVELDIRSVGLRAAVQDALDDALTL 256

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFI 720
                I ++      L + V D  +L Q+   ++ NA+ +  +   V+++          
Sbjct: 257 AQPRAIALENQVPVGLSAKV-DAAKLRQVLGNLIENAIKYGRERGRVVVQGRATGAAMVE 315

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V ++G  IP +    VF RF         ++ G GLGLSIV++ +  HGG V + S  
Sbjct: 316 IAVCDDGPGIPAEARSRVFERFYRVDKARSREQGGTGLGLSIVKNLVQAHGGEVRVESEL 375

Query: 779 EGVTTINCRIPSKE 792
                    +P  E
Sbjct: 376 GRGARFFFTLPEAE 389



 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 19/151 (12%)

Query: 288 EAGIAIDVSK-----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            A  A +V++     E T + Q      +L ++   + + D    +   N +   ++   
Sbjct: 27  VARHAREVAELKERFEETEHAQTARMEAMLDSMIEGLIVLDATGRIARVNEAAETMFG-- 84

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
              ++   +   LLE +R               + I    +                + V
Sbjct: 85  ---MSRMMAGGTLLEAVRHHEVAALAARAAKEAKAIEQEIRIERPQPRVLQ------VSV 135

Query: 403 IVTSNPRG---GTIWMFENLTVQVDLETKYN 430
           +   +P G   GT+ +F ++T    LE    
Sbjct: 136 VALRSPTGAEVGTVLVFHDVTRLQQLEAIRQ 166


>gi|54294995|ref|YP_127410.1| sensor histidine kinase [Legionella pneumophila str. Lens]
 gi|53754827|emb|CAH16314.1| sensor histidine kinase [Legionella pneumophila str. Lens]
          Length = 816

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/410 (22%), Positives = 170/410 (41%), Gaps = 58/410 (14%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                D L +   +   D  I   + A+         ++  G ++ +           + 
Sbjct: 12  FKSIFDSLPDLYLLLDRDFNIVGVSDAYLQATMVSRKQIL-GKNVFDAFPDNPNDPKATG 70

Query: 496 GWDLFAAI-------------ITSFDDERKSLQG------------TLELLSDSVLEYSI 530
             +L+A++             I  +D +R + QG            T  L +D  +EY I
Sbjct: 71  AKNLYASLLRVLKNKSADTMAIQKYDIQRPADQGGGFEERYWSPINTPVLGADQEVEYII 130

Query: 531 IPLPN--------------------------AQTMLTFVNVTDSVRAERALTEKNEALRK 564
             + +                             +  +    +   A + L E N+ L +
Sbjct: 131 HRVEDVTEFVHLKKTGSAQLKLMEELRTKAGEMEIEIYQRAQEIQEANKQLEEANKNLAR 190

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            D+IK  F  +VS+ELR+PL  I+G  ++L   K   L S     + +I  ++ ILL  V
Sbjct: 191 LDQIKTQFFANVSHELRTPLMLILGPLEMLLAEK--KLPSFVQNTLRHIQNNAQILLKHV 248

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND+L+++ +DAG M L+Y+ I L  L+ +       ++ E  +   +    +L + + D 
Sbjct: 249 NDLLNISKLDAGKMILHYANIDLVKLIQQTIALFEAQIPERKLVFSMDLPDELQAQI-DP 307

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFV 743
            ++  +   ILSNA+ F+ + + V ++  + N +     +++NG  IP D+C+++F RF 
Sbjct: 308 DKMQHVLINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDNGPGIPSDLCETIFERFF 367

Query: 744 S--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                      G GLGLSI + F+ LHGG +    +  G       +P K
Sbjct: 368 QIEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGDARNGGAIFTIELPLK 417



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 108/278 (38%), Gaps = 23/278 (8%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T  +L +   +Y I P    +      N+    +AE  L              + FV H 
Sbjct: 555 TARMLEEGAQDYVIKPFSAKEFKARVANLILVKKAEDEL--------------DQFVYHA 600

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S++L++PL  +      ++      L+ +  +Y+  +   ++ +  L++ +L  A   +G
Sbjct: 601 SHDLKAPLPAMEHLISWIEEDLGEMLSEQSKKYLLLLRQRASRMSKLLDGLLKYA--QSG 658

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +     TI  + L+ ++ + +          +    +  L         L ++F+ +L 
Sbjct: 659 YVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLNTCELPLREVFTALLD 713

Query: 697 NAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           N++     K   +I+     +  + F V ++G  I +     +F  F +   R +    G
Sbjct: 714 NSIRHHHSKDGHIIIGTKEKDRFYEFFVADDGPGIEKKYQDRIFQLFQTLQPRDKLETSG 773

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS-KE 792
           +GLSI +  +   GG +S+ S     +      P  KE
Sbjct: 774 VGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDKE 811


>gi|302383368|ref|YP_003819191.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193996|gb|ADL01568.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 605

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L    +    A++ K++F+  +S+ELR+P+  ++G   LL +++   L S Q +Y+  
Sbjct: 204 EELQGARDKADAANQAKSNFLGVISHELRTPMNGVLGAAQLLGSTR---LESTQREYLSI 260

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+L+NDILD+  ++AG M      I L DL   V    A +     ++    
Sbjct: 261 IRNSGDNLLHLLNDILDMTKIEAGKMTFEVIDIGLEDLHRRVTGPFAAQAEAKGLQFVST 320

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGDFI---FSVKNNG 727
            +G+  S V  D  R+ Q+   +LSNA+ F+  G+   ++++ R +   +   FSV ++G
Sbjct: 321 FEGETPSVVRGDPLRVCQVIQNLLSNAVKFTDTGTIHYVVRSRRISDKRVAFDFSVTDSG 380

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           + I     + +F  F        RR  G GLGL+I     N+ GG + + S     +T  
Sbjct: 381 AGIAPADLERLFQPFTQVDASSTRRFGGTGLGLTIARRMANIMGGDIQVESIVGQGSTFT 440

Query: 786 CR 787
             
Sbjct: 441 LS 442


>gi|254520989|ref|ZP_05133044.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Stenotrophomonas sp. SKA14]
 gi|219718580|gb|EED37105.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Stenotrophomonas sp. SKA14]
          Length = 1148

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/493 (18%), Positives = 197/493 (39%), Gaps = 36/493 (7%)

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR-SANKLPEQLNWKTWKENIFSVYK 383
            +  L+     F++ +    +     P +  + + L  ++  + E+   + + E   S+ +
Sbjct: 516  DERLRAA--PFLDPYAERPSVAGGWPGHVHVGDLLALASRVVGERHARRAFFEQAQSLGR 573

Query: 384  ---SSETHKDTWHLPNGQTL---------HVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
               SS      W     + L          +++TS  RG  + + E + V  +   +   
Sbjct: 574  ELQSSAPADRPWVQFTERLLAASIGAASARLLLTSLLRGSGMDLGEVVAVLDEAGQELRF 633

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
              ++   T++++S GV+V  PD R+   N  ++ ++   +  L  G  + ++    +   
Sbjct: 634  NREILSTTLENISAGVSVVDPDMRLTAWNRRYQDMFGYPDGMLYVGRPVADLIRYNAERG 693

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
               +G D+   I       R       E       V+E     LP    + ++ ++TD  
Sbjct: 694  ELGEG-DIEVQINRRIGYMRAGSPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYK 752

Query: 550  RAERALTEKNEALRKA-----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
             AE+AL E NE L +             + K  F+  +S+++  PL     F   L+ S 
Sbjct: 753  HAEKALLEANETLEQRVAERSHEAEVAQQSKTRFLAAISHDVLQPLNAARLFASALRDS- 811

Query: 599  LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               ++ +Q    E + AS      L++ +LD++ +DAG +        ++ L+ E+    
Sbjct: 812  -DHVSDEQKHLAERVDASLRAAEELLDGLLDVSRLDAGGLHPVIGEFDVSALMRELAAQY 870

Query: 659  ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                    +R+ + +  +     +DR+ L ++    L+NA+ ++ +G  ++L       +
Sbjct: 871  TPVAAGRGLRLDLFA--RPAWVRSDRRLLRRVLQNFLANALRYTRQG-RIVLAVRHRGDE 927

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                V + G  IPE   + +F+ F           +G+GLGLSI +    L    ++  S
Sbjct: 928  VELQVWDTGPGIPEHHMRQIFDEFHRYQQPFDWGEQGLGLGLSICQRISRLLDHRLNARS 987

Query: 777  SDEGVTTINCRIP 789
                 +  +  +P
Sbjct: 988  RVGSGSMFSIILP 1000



 Score = 87.3 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 110/356 (30%), Gaps = 42/356 (11%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
            ++A  E  +    E++    +     +     ++      +    +  +L   G     
Sbjct: 560 ARRAFFEQAQSLGRELQSSAPADRPWVQFTERLLAASIGAASARLLLTSLLRGSGMDLGE 619

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++  +++ D +  L   NR + +++      L   
Sbjct: 620 VVAVLDEAGQELRFNREILSTTLENISAGVSVVDPDMRLTAWNRRYQDMFGYPDGMLYVG 679

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +          ++   H       +G+ + +   + P 
Sbjct: 680 RPVADLIRYNAERGELGEG-DIEVQINRRIGYMRAGSPHVFERTRSDGKVIEMRGQALPG 738

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GG +  + ++T     E       +   +                         R   ++
Sbjct: 739 GGYVTSYNDITDYKHAEKALLEANETLEQ-------------------------RVAERS 773

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD---DERKSLQGTL-------E 519
            E  ++  +  R +AA         +   LFA+ +   D   DE+K L   +       E
Sbjct: 774 HEAEVAQQSKTRFLAAISHDVLQPLNAARLFASALRDSDHVSDEQKHLAERVDASLRAAE 833

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
            L D +L+ S +   +A  +   +   D     R L  +   +     ++      
Sbjct: 834 ELLDGLLDVSRL---DAGGLHPVIGEFDVSALMRELAAQYTPVAAGRGLRLDLFAR 886



 Score = 38.4 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 67/493 (13%), Positives = 150/493 (30%), Gaps = 63/493 (12%)

Query: 91   ETPEIIGQLHQRIDIPQTDTDLLSFENWL-KFHHYIKLSKATEKLRKEGQSFDLVAETQN 149
            E P + G     + +     DLL+  + +    H  +     E+ +  G+  +L +    
Sbjct: 530  ERPSVAGGWPGHVHV----GDLLALASRVVGERHARR--AFFEQAQSLGR--ELQSSAPA 581

Query: 150  DCAI----KIEGRVSGSCAFLRILSLDGIYSE-------LAETTLKCKKLSNHISVFKVL 198
            D       +     S   A  R+L    +          +A      ++L  +  +    
Sbjct: 582  DRPWVQFTERLLAASIGAASARLLLTSLLRGSGMDLGEVVAVLDEAGQELRFNREILSTT 641

Query: 199  FDSLDFLVWHRDQAGDILWANISYKKN---------TETEGIVFQKAIGESRKLFKEEIK 249
             +++   V   D    +   N  Y+                    +   E  +L + +I+
Sbjct: 642  LENISAGVSVVDPDMRLTAWNRRYQDMFGYPDGMLYVGRPVADLIRYNAERGELGEGDIE 701

Query: 250  KRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAIDVSKEITVNDQLTHT 308
             ++       +     V      + K  ++  + L   G      D++        L   
Sbjct: 702  VQINRRIGYMRAGSPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKHAEKALLEA 761

Query: 309  YEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLATNPSNDELLEFLRSANKLPE 367
             E L        + +++   +   +S    L  I    L    +       LR ++ + +
Sbjct: 762  NETLEQ-----RVAERSHEAEVAQQSKTRFLAAISHDVLQPLNAARLFASALRDSDHVSD 816

Query: 368  QLNWKTWKENIFSVYKSSETHKDTW---HLPNGQTLHVIVTSNPRGGTIW-MFENLT--- 420
            +   K   E + +  +++E   D        +   LH ++        +  +    T   
Sbjct: 817  E--QKHLAERVDASLRAAEELLDGLLDVSRLDAGGLHPVIGEFDVSALMRELAAQYTPVA 874

Query: 421  ----VQVDLETK---YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
                +++DL  +     +  ++    + +       +   GRI L+        + +   
Sbjct: 875  AGRGLRLDLFARPAWVRSDRRLLRRVLQNFLANALRYTRQGRIVLAVRHRGDEVELQVWD 934

Query: 474  LSPG---THIRNIAATCSRYYNESDGWDL-------FAAIITSFDDERKSLQGTLELLS- 522
              PG    H+R I     RY    D  +            I+   D R + +  +   S 
Sbjct: 935  TGPGIPEHHMRQIFDEFHRYQQPFDWGEQGLGLGLSICQRISRLLDHRLNARSRVGSGSM 994

Query: 523  DSVLEYSIIPLPN 535
             S++   + PLP 
Sbjct: 995  FSIILPRVAPLPG 1007


>gi|254881711|ref|ZP_05254421.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|319643677|ref|ZP_07998294.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
 gi|254834504|gb|EET14813.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|317384707|gb|EFV65669.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
          Length = 757

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 167/390 (42%), Gaps = 26/390 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWK 468
           G  ++    T++   + +    ++ + E +    EG     +  DG+  + + AF  L  
Sbjct: 381 GIAYLIYIYTLEKGRKKEALRNLRFEHEALTLALEGGNTYAWCFDGKTAVLDQAFCELTN 440

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD---SV 525
             +N L     I  IA     +Y   D    F   +++    ++         +D     
Sbjct: 441 RSQNLLG----IEEIA-----HYVHPDEQARFRKNVSNILHRQRRTAQYRCQFNDTGYQW 491

Query: 526 LEYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            E+    L N +          N+ +    E  L    + L +  E+K SF+ ++S+E+R
Sbjct: 492 WEFRYSVLQNNEQNPIITGLLVNIQEIKDKEEELIRARK-LAEQAELKQSFLANMSHEIR 550

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GF++LL T K  S   ++ ++   I  ++ +LL LVND+L+L+ +++G M  +
Sbjct: 551 TPLNAIVGFSNLLTTEKNIS-EEEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFH 609

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                 +     V Q+    +    +        +  +   DR RL Q+ +  L NA  F
Sbjct: 610 CEDCSAHHFAETVYQTHQVIILP-PVEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKF 668

Query: 702 SSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           +S+G  + L     ++  +    V++ G+ IP++  + +F RF       Q  GVGLGL+
Sbjct: 669 TSQGH-IKLGYFCDKEKKEIHIFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLA 725

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I +  +    GH+ + S     +     +P
Sbjct: 726 ISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 755


>gi|224367364|ref|YP_002601527.1| two-component hybrid sensor and response regulator histidine kinase
           (phoR-like protein) [Desulfobacterium autotrophicum
           HRM2]
 gi|223690080|gb|ACN13363.1| two-component hybrid sensor and response regulator histidine kinase
           (phoR-like protein) [Desulfobacterium autotrophicum
           HRM2]
          Length = 588

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 153/385 (39%), Gaps = 28/385 (7%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGET-IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
                 ++  ++D + K      ++ E  +  + EGV     + R+ + N A   ++   
Sbjct: 225 LALTINHMAERLDEKIKSAEDRTMELEAVLSSMGEGVIAVDLNERVLMVNRAVAGIFDHP 284

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
              ++     +NI      Y    D        + S D   +++  TL      +     
Sbjct: 285 IETMTN----KNILEIARNY----DLHKFIKRALASPDSIGENI--TLTDTGKRLFNVHS 334

Query: 531 IPLPNAQT--MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             L NAQ   M T +   D  R  R  T               F  +VS+EL++PLT+I 
Sbjct: 335 NTLSNAQGERMGTLIIFHDITRMHRLETMHK-----------DFAANVSHELKTPLTSIK 383

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI-MKLNYSTIVL 647
           GF + L+        +++  ++  I  +   ++ LV+D++ L+ ++     K  +    L
Sbjct: 384 GFIETLQDLDESEALTRREGFLTIIEKNVNRMIALVDDLMALSKLERQEGDKTVFEPHDL 443

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           + ++   + +  T+     + +K    G L     D   + Q    +L NA+ +S  G  
Sbjct: 444 SAVIKSARAACRTRSESGRVTVKADLSGPL-FIPMDTLLVEQALVNLLDNALKYSEPGGE 502

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
           V+++ A++ G  +  V ++G  I ++    +F RF            G GLGL+IV+  +
Sbjct: 503 VLIQVAQEKGSALIRVIDSGPGIGQEHLSRIFERFYRVDSARSTDMGGTGLGLAIVKHIV 562

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
             H G + + S+ +        +P 
Sbjct: 563 QYHNGTIRVESTPDKGAMFEISLPL 587



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 33/184 (17%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            K  +  D+      +L ++   +   D N  +   NR+   +++  +  +    +N  +
Sbjct: 238 EKIKSAEDRTMELEAVLSSMGEGVIAVDLNERVLMVNRAVAGIFDHPIETM----TNKNI 293

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL---HVIVTSNPRG-- 410
           LE  R         N+   K    ++       ++      G+ L   H    SN +G  
Sbjct: 294 LEIAR---------NYDLHKFIKRALASPDSIGENITLTDTGKRLFNVHSNTLSNAQGER 344

Query: 411 -GTIWMFENLTVQVDLETKYN--------------TLVKVQGETIDHLSEGVAVFGPDGR 455
            GT+ +F ++T    LET +               T +K   ET+  L E  A+   +G 
Sbjct: 345 MGTLIIFHDITRMHRLETMHKDFAANVSHELKTPLTSIKGFIETLQDLDESEALTRREGF 404

Query: 456 IKLS 459
           + + 
Sbjct: 405 LTII 408


>gi|158338973|ref|YP_001520150.1| chemotaxis response regulator [Acaryochloris marina MBIC11017]
 gi|158309214|gb|ABW30831.1| chemotaxis response regulator, putative [Acaryochloris marina
            MBIC11017]
          Length = 1502

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 113/683 (16%), Positives = 230/683 (33%), Gaps = 77/683 (11%)

Query: 165  FLRILSLDGIYSELAETTLKCKKLSNHISVFK----VLFDSLDFLVWHRDQAGDILWANI 220
             + I +   +  EL    +K K   + + VF+     L+     +++  D  G I+  + 
Sbjct: 834  IIDITATRKVQIELQSQRIKAKLAQDTLEVFQERYQQLYHETPVMMYSLDARGVIIEVSN 893

Query: 221  SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
             +         +   A  +     + + + + +    LE      +        KS +I+
Sbjct: 894  FWLSKLGYPRNMTLGATVDIFLNLESQKRFQKLWPRFLESGLSIDIPMQI--QTKSGEII 951

Query: 281  RVLN-------SFGEAG----IAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQN 325
             VL          GE      +++D+S     E    +       +  +  V I + +  
Sbjct: 952  DVLQSMIAERDDLGEVSRCLVVSVDISQRKLAEAARLESEQRFRSMADHAPVMIWLTEAP 1011

Query: 326  RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             +  + N+ ++              S ++ LE        PE L             +  
Sbjct: 1012 GHCTYLNQEWLRFTG---------DSLEQALERGWQDRIHPEDLEESVAAYQQAVTERQP 1062

Query: 386  ETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKY--------- 429
               +      NG    ++ T+ PR        G I    ++++Q   E            
Sbjct: 1063 LRLEYRRCDRNGTYCWILDTAKPRFLPTGEFAGMIGSCIDISLQKQAEAALELSNLNLEA 1122

Query: 430  ----------------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
                                       D+    + +    G     N  + +L       
Sbjct: 1123 DLAEKDASLHTIEGNLQESEARFYSLADNAPVLIWLSDAQGNCTYVNQTWENLTGQSLES 1182

Query: 474  LSPGTHIRNIAATCSRYYNE--SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                  +  I             +           F   R        L +       I 
Sbjct: 1183 QLGDGWLETIHPEDRDRVKTLFQESCAQQCPFEQEFRQARADGVYRWILATGVP---RIA 1239

Query: 532  PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                A  + + ++++D   +++ L +  + L+++++    F    S++LR PL  I  F 
Sbjct: 1240 ADQFAGLICSCMDISDIKHSQKRLEQAIQELQRSNQELEQFAYIASHDLREPLRKIQSFA 1299

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +LL+      L+  QS+Y  YI + +  +  L+ D+L  + V  G        I L  ++
Sbjct: 1300 ELLQDDLSTKLDQDQSRYFGYIMSGAQRMQCLIQDVLQYSRV--GRSDQPLELIDLKHVI 1357

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF---SSKGSTV 708
              V+  ++  + E+   I+  S   L S  A    + Q+F  +++NA+ F   +     +
Sbjct: 1358 EIVQSDLSLAIEESQAVIEFDS---LPSIHAHTVEITQVFENLINNAIKFRSSTPP--RI 1412

Query: 709  ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
             + A +    +   VK+NG  IPED  + VF  F    +  Q  G G+GL++    I  +
Sbjct: 1413 QISAEQQPESWTILVKDNGIGIPEDSLERVFVMFQRLHYSNQYPGTGIGLALCRKVIESY 1472

Query: 769  GGHVSISSSDEGVTTINCRIPSK 791
            GG ++ +S+     T   + P +
Sbjct: 1473 GGTLTCTSAPGKGATFILQFPLQ 1495


>gi|153870733|ref|ZP_02000072.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072802|gb|EDN69929.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 922

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 160/380 (42%), Gaps = 44/380 (11%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            LS G+ +   + +I +   A    ++  E+ L     I  I   CS Y ++S   + F 
Sbjct: 233 SLSSGLIMTLDNDQISV--QAGVGRFEKWEDNL----EIDKITHLCSEYLSKSKSNESFE 286

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--------- 552
            +  + D     L+   +L+    LE +       Q  +  +    +   E         
Sbjct: 287 PV--ALDALLMPLEVHDKLIGFIYLENAQNLSQVEQNFIHIMANQCASALENLQLYLGLK 344

Query: 553 ----RALTEKN------EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
               + L   N      +    A+++K++F+ ++S+E R+PL  I+G+T LL+     +L
Sbjct: 345 EANQQTLQMLNVAEAARQEAEAANQVKSTFLANISHEFRTPLNCILGYTQLLQDD--NTL 402

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            S+Q + +  I  S   LL LVNDIL+L+ ++ G ++L+ +   L   L+++ +      
Sbjct: 403 TSRQKEDISVIQHSGNYLLKLVNDILELSKLEKGNIELHPNDFRLGSFLHDIVKMFQISA 462

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
            +  I +   +   L + + AD +RL QI   +LSNA+ F+ +G  V  +   +      
Sbjct: 463 EQKGISLIFQTLSNLPTVIHADEKRLRQILIHLLSNAIKFTEQGG-VTFQVKSEKLPAQS 521

Query: 718 --------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLH 768
                      F + + G  I  +  + VF  F   +  R +  G G+GL I +  I + 
Sbjct: 522 EVSNLPPFKVYFQIADTGIGISTEALEKVFLPFEQASEWRHKSEGTGVGLPITKQLIEMM 581

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG +   S     +     +
Sbjct: 582 GGELLFESHPGKGSQFWFEL 601


>gi|294672858|ref|YP_003573474.1| sensory box histidine kinase [Prevotella ruminicola 23]
 gi|294473160|gb|ADE82549.1| sensory box histidine kinase [Prevotella ruminicola 23]
          Length = 914

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 97/525 (18%), Positives = 209/525 (39%), Gaps = 54/525 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---LAFLATNP 350
           +V +E    +  +    +     +A++ +D++  L   NR   +L E D     F     
Sbjct: 417 EVQEERMNEEIASKYQNMFEYGLIAMSFYDKDGKLIDVNRRMADLCEFDKDGEEFFRQMN 476

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKE---NIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
             +  L   +      E+ N+   +        +YK  E         NG+    +VT+ 
Sbjct: 477 LFEVPLVKGQYHK--GEKENFHVCQRMFYPEIGIYKYIEIKVRPTFDENGEMQFYVVTAR 534

Query: 408 PRGGTIWMF----ENLTVQVDLETKYNTLVKVQGETI--DHL-------SEGVAVFGPDG 454
                  ++     + T          T  +  G  +   ++       +EG+  F   G
Sbjct: 535 DMTAERHLYLEQHRHDTEIRKATENIKTYEEQLGYLLMNSNMFVWSFYTNEGIIHFSRSG 594

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           R                 +      I    A  +  Y ES   +++   +        ++
Sbjct: 595 R-----------------KSDYTETIEEFFAGATEEYRESGIREVYET-MRQGKPYNTTI 636

Query: 515 QGTLELLSDSVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADE 567
                      + Y+I  +P+               N+   + A++ L ++ +   ++ +
Sbjct: 637 HFNHTPSEPKPVWYAISGIPSFDSSGNVCKYFGVARNINTLMEAQQKLKDETQRAEESGK 696

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K +F+ ++++E+R+PL  I+GF+DLL    +   +S++ +++  I  +  +L+ L+NDI
Sbjct: 697 MKAAFLANMTHEIRTPLNAIVGFSDLL---PVVEEHSERMEFIRIIRNNCDMLMRLINDI 753

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L+ + V    + +    +    + +++ Q++A ++ E  +     +  +      D+ R+
Sbjct: 754 LEASNV-GQALAIQPEQVDFAKVFDDICQTLAQRVDEAGVLFIKDNPYETFPATLDKGRI 812

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
            Q+ +   +NA+ ++ +G  + +     +G   F  ++ G+ IP+D   +VF RFV    
Sbjct: 813 QQVLTNFTTNAIKYTHEGH-IKVGYREQDGGIYFYCEDTGAGIPKDKQAAVFERFVKLND 871

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPSK 791
             Q  G GLGLSI ++      G + + S  EG  +T    IP K
Sbjct: 872 FVQ--GTGLGLSICKAIAERCEGKIGVESEGEGHGSTFWMWIPRK 914



 Score = 42.6 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 56/199 (28%), Gaps = 4/199 (2%)

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
             Y      K  WH   G  + V    +     I  F + T +V  E     +       
Sbjct: 376 RRYNRGTIEKPDWHWIEGHAV-VEYDEDKPRYIITSFRDYTNEVQEERMNEEIASKYQNM 434

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            ++    ++ +  DG++   N     L + +++       +        +        + 
Sbjct: 435 FEYGLIAMSFYDKDGKLIDVNRRMADLCEFDKDGEEFFRQMNLFEVPLVKGQYHKGEKEN 494

Query: 500 FAAIITSFDDER---KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           F      F  E    K ++  +    D   E     +             +  R +  + 
Sbjct: 495 FHVCQRMFYPEIGIYKYIEIKVRPTFDENGEMQFYVVTARDMTAERHLYLEQHRHDTEIR 554

Query: 557 EKNEALRKADEIKNSFVQH 575
           +  E ++  +E     + +
Sbjct: 555 KATENIKTYEEQLGYLLMN 573


>gi|229178406|ref|ZP_04305774.1| hypothetical protein bcere0005_17670 [Bacillus cereus 172560W]
 gi|228605044|gb|EEK62497.1| hypothetical protein bcere0005_17670 [Bacillus cereus 172560W]
          Length = 443

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L      + KA+++KN F+  +S+E+R+PLT I G+++ LKT    +   + 
Sbjct: 205 ELGELAHSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDYLT-EEEI 263

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  
Sbjct: 264 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKE 323

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+     D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ 
Sbjct: 324 IQFITTIDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDE 381

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G G+GL+IV+  + LHGG +S++S +   TTI  
Sbjct: 382 GIGIAKEHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILI 439

Query: 787 RIPS 790
           ++P 
Sbjct: 440 KLPL 443


>gi|189197047|ref|XP_001934861.1| signal transduction histidine-protein kinase barA [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187980809|gb|EDU47435.1| signal transduction histidine-protein kinase barA [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1326

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 156/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 572 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 631

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 632 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 687

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 688 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 747

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 748 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 804

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S+A++ +E  + +       +    V D  RL QI   
Sbjct: 805 ANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYTVPDYVVGDSFRLRQIILN 864

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 865 LVGNAIKFTEHGEVKVAISMAQEQECGPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 924

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 925 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 967


>gi|167764904|ref|ZP_02437025.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183]
 gi|167697573|gb|EDS14152.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183]
          Length = 1473

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 116/241 (48%), Gaps = 5/241 (2%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L  K    ++  +IK  F  ++S+ELR+PLT I G  + +     G L++++ + +  + 
Sbjct: 929  LKHKVSVEQEISDIKLRFFTNISHELRTPLTLIAGPIEHVLQH--GKLDNEEREQLMLVE 986

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +    MK+    I L     ++ +S      E+ I   + + 
Sbjct: 987  RNTNRMLRLVNQILDFRKIQNKKMKMRVQQIDLIPFTRQIMESFNRLADEHQIDFGMTTQ 1046

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   AD  +L +I   +LSNA  ++ +G  + +    +  + + +V++ G  I E  
Sbjct: 1047 VSQLKIWADPDKLEKILFNLLSNAFKYTPQGKQIRVIVQDEEDEVMIAVEDQGIGIAESK 1106

Query: 735  CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS-K 791
             KS+F RF +   +    +   G+GLS+V+  I++H G ++I S     +    ++P  K
Sbjct: 1107 QKSLFIRFENLVDKNLFNQASTGIGLSLVKELIDMHHGTINIHSKPGEGSCFTVKLPKGK 1166

Query: 792  E 792
            E
Sbjct: 1167 E 1167


>gi|71907078|ref|YP_284665.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846699|gb|AAZ46195.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 1131

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 5/255 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    R + AL +      +A++ K+ ++  +S+ELR+PL +I+G+  +L
Sbjct: 646 NRQTQLLIQEIESHQRTDAALQQAKVVAEQANQAKSRYITAISHELRTPLNSILGYAQIL 705

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   +   + Q V  I  S   LL+++   LD+A ++ G + L+   +   +L+ ++
Sbjct: 706 AADE--DIPPNRLQAVSVIRKSGDHLLSVIEGTLDIARIEGGKLTLDVKAMDFPELMQQI 763

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     +       G+L + V AD +RL QI   ++ NA+ F+ +G  V  K  
Sbjct: 764 VGMFELQARNKGLSFDYQPVGELPAVVRADEKRLRQILINVIGNAVKFTVRGG-VSFKVE 822

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                 IF +++ G  IP    + +F  F   +   Q  G G+GL+I     +L GG + 
Sbjct: 823 CRRDMAIFEIRDTGPGIPAADLERIFEPFTRGS-TVQAGGSGVGLTIARMLTDLMGGEMQ 881

Query: 774 ISSSDEGVTTINCRI 788
           +SS+    T    R+
Sbjct: 882 VSSTAGEGTLFRIRL 896


>gi|327542128|gb|EGF28621.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 690

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 167/389 (42%), Gaps = 26/389 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----------- 469
             +    +     ++    I      V V   DGR++L N A  +++             
Sbjct: 163 ELIAAAERERDHARMFQTMIQASPLSVIVMDYDGRVELWNEASEAIFGWTSAEVLGYPLP 222

Query: 470 --EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              +++L     IR+     S +       D + A     + ER+++   +  +S    +
Sbjct: 223 IIPDHKLDECQRIRDAVGDGSVFRC----VDTYRAKGEDANGERRTVHVNVSAVSLHRYD 278

Query: 528 YSI--IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                I L       +  +  +  R  R L ++   L + DE KN F+  +++ELR+PLT
Sbjct: 279 GHSDRILLIIDDVTQSHADTLERERLFRELQKEKALLSEMDERKNRFLALLAHELRNPLT 338

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I    DLL+ +      ++ ++    + +    L+ L++D++D++ +  G + L   T+
Sbjct: 339 PIGNAVDLLRFAAKDP--NQVNEISTVLESQVHQLVRLIDDLMDVSRITRGRIDLQRETV 396

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSK 704
            ++D++    +++ +  +E    +   +D K       D  RL Q+ + +L+NA  ++  
Sbjct: 397 SIHDIVANSCRAVESLCNEMGHELIRRTDPKQSLHVHGDYVRLTQVVTNLLNNACKYTPP 456

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
              + +   + +G    +VK+NG  IP +  K +F  F          R G+G+GL++V+
Sbjct: 457 SGRIEISCGQVDGQVEIAVKDNGVGIPPEHRKGIFEMFTQVDETLKDSRGGLGIGLTLVK 516

Query: 763 SFINLHGGHVS-ISSSDEG-VTTINCRIP 789
             + LHGG VS + S D    +     +P
Sbjct: 517 QLVELHGGKVSLVDSDDTSTGSEFRIHLP 545


>gi|117168610|gb|ABK32275.1| Amb7 [Sorangium cellulosum]
          Length = 2087

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 126/270 (46%), Gaps = 16/270 (5%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            Q +       +  +A +AL EK   L    + K+ F+ ++S+ELR+PL +++  +D L  
Sbjct: 1373 QNVEVERKNREVEQARQALEEKARQLAITSKYKSEFLANMSHELRTPLNSLLILSDQLSK 1432

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +L  +Q ++ + I +S   LL L+NDILDL+ +++G + ++   +  +DL + V++
Sbjct: 1433 NNDRNLTGRQVEFAKTIHSSGNDLLALINDILDLSKIESGTVIVDVGELSFSDLQDYVER 1492

Query: 657  SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILK- 711
            +         +  ++     L   +  D +R+ Q+   +LSN+  F+ +GS    V L  
Sbjct: 1493 TFRHVAESKKLEFELNFAQNLPQVIYTDAKRVQQVLKNLLSNSFKFTERGSVALDVDLVT 1552

Query: 712  ---------AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
                      +R       SV++ G  IP D  + +F  F        R   G GLGL+I
Sbjct: 1553 SGWAPENEGLSRAGAAIAMSVRDTGIGIPHDKQQIIFEAFQQADGSTSRKYGGTGLGLAI 1612

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  + GG + +SS     ++    +P 
Sbjct: 1613 SREIAWMLGGEIKLSSKPGSGSSFTLYLPL 1642


>gi|320159170|ref|YP_004191548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319934482|gb|ADV89345.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 716

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 15/355 (4%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D +++G+       ++     A + +   E    S  + I  +    + Y +E      
Sbjct: 112 LDAMTQGL------HQLTSRVAALKEVTSAEAVMPSLISEIDTLYDRWNTYTSEVILQVE 165

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                     E+   Q     L+   +   II L     +        + +    + E  
Sbjct: 166 HNQSDFLLTREQFYHQQHWYYLAILFVSILIIALVFKLYIDQVRLTRFTQQQSLDMQEAK 225

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            A   + E K+ F+ ++S+E+R+PL  IIG +D   T    + + +  +Y++ I  S   
Sbjct: 226 RAAEASAETKSKFLANISHEVRTPLNAIIGLSD---TDHYLNASEQIREYIDLIHRSGKH 282

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDILD++ +D+G + L      L D++++ +     +     +   +I+      
Sbjct: 283 LLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLFHERTQTPGVESFIITPQDCDM 342

Query: 680 F-VADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSSIPEDMC 735
               D  RL QI S + SNA+ F+ +G       ++    N      V + G  I E   
Sbjct: 343 IFYGDPLRLFQIISNLCSNAIKFTHEGQIKVAFTVQNRGPNSVLQICVSDTGIGISEAQL 402

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + VF+ FV       R   G GLGL+I +   NL  G + I S     T +   +
Sbjct: 403 QKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGTLRIESELNRGTHVTLSL 457


>gi|332307241|ref|YP_004435092.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174570|gb|AEE23824.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 720

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 15/270 (5%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           +   P+ N              +AE A     +   +A++ K+ F+  +S+ELR+P+  +
Sbjct: 195 FIFRPMENKVRDALSSLKDAIQKAEEA----EQQAVEANKAKSEFLASMSHELRTPMNGL 250

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            G  +L   +       K  +Y++    S   LL L+ND+LDL+ ++AG +++  +++ L
Sbjct: 251 FGMMELALDNPH-----KSGEYLKKAKNSGKQLLVLINDVLDLSKIEAGKLRIERTSLDL 305

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL++V    +       +      +  L      D  R+ QI   +LSNA+ F+ +G 
Sbjct: 306 LQLLDDVTSVQSANARLKKLNFNYNKNTTLPSHIFGDPTRIAQIMHNLLSNAIKFTHQGE 365

Query: 707 T---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIV 761
               V ++          SV++ G  I  +  KS+FN+F    H   R   G GLGLSI 
Sbjct: 366 VNLDVGVQVKDKRFWLNISVQDTGIGIKPEKLKSIFNKFEQADHSTTRLHGGTGLGLSIA 425

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +    L  G ++  S++   +     +P +
Sbjct: 426 KQLTELMHGTLTAQSTENEGSCFVLTLPIE 455


>gi|329314169|gb|AEB88582.1| Sensor protein srrB [Staphylococcus aureus subsp. aureus T0131]
          Length = 564

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 205 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 262

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 263 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 315

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 316 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 349

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 350 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 408

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 409 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 467

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 468 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 527

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 528 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 564


>gi|325108930|ref|YP_004269998.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324969198|gb|ADY59976.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1628

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 146/874 (16%), Positives = 305/874 (34%), Gaps = 124/874 (14%)

Query: 2    MAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSF 61
             AG   I  G  + +  +F+  +    T+  +          + R+R     +  E    
Sbjct: 621  FAGYPLIIEGHSMGVIGVFTSGVISPATLKDLAPLADTIAQYIQRKRGEDTLQERE---- 676

Query: 62   LSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD-TDLL--SFENW 118
                     +Y  +   +N   +++D +     I+        +   +  + +  S    
Sbjct: 677  --------QQYRGIFEASNDAILIFDQEGN---IVEANPFACQMHGYEYGEFIGKSASEI 725

Query: 119  LKFHHYIKLSKATEKLRKEGQSF---DLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
            +     ++L++  E++ K G  F    +    Q+   I +E + SG     +   L  + 
Sbjct: 726  IDKQSELELTRFFERV-KSGTPFFDQGIHVR-QDGSPIHVEIQGSGLQYRGKPHLLTVVR 783

Query: 176  --SELAETTLKCKKLSNHISVFKVLFDSLD----FLVWHRDQAGDILWANISYKKNTETE 229
              +E  +   +  +L+      + L+D++       V+  D      +AN +        
Sbjct: 784  DVTERRQAERQFLELTQESERQRRLYDTILSNALDQVYVFDLDHRFSYANQA---LLNMW 840

Query: 230  GIVFQKAIGESRKLFKEEI------KKRMISSSALEKNFCETVSTLEHGNNKSYKIV--R 281
            G  +++AIG++ +             + +      ++              + Y  +   
Sbjct: 841  GKSWEEAIGKNCRELGYPDWQVRKHSEELNQVILTKQPIRGEAPVTGTNGRRIYDYIFYP 900

Query: 282  VLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNR 333
            VL   GE    AG + DV+      + L  +      L  A+         N Y+ ++N 
Sbjct: 901  VLGVDGEVEAIAGTSRDVTDRKITENNLRQSEARFRQLADAMPQIVWTATPNGYIDYYNN 960

Query: 334  SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE------------NIFSV 381
             + E   +           D     + S        +   WKE            +I   
Sbjct: 961  RWYEFTGL----AKNQHGEDSWNRIMHSE-------DAAHWKEVWNRSVDEGTAFDIEFR 1009

Query: 382  YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
              +  T    W+L  G+ +               F ++  Q   E   + L +     +D
Sbjct: 1010 LYNRRTRSFEWYL--GRAIPAQDEDGDVVRWFGTFTDINRQKRNEQISDFLAEASSRLVD 1067

Query: 442  HLSE-------------------GVAVFGPDGR-----IKLSNPAFRSLWKTEENRLSPG 477
            + S+                    + +   DGR     +  + P    L     +   P 
Sbjct: 1068 YFSDESTMQEVARIAVPDFADWCSIDMLEQDGRGRRVALVHAEPDDEKLQSQLADLYPPE 1127

Query: 478  THIRNIA----ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE------LLSDSVLE 527
                +I      T   +  +    D   + +   D+ RK+    +       L+S + + 
Sbjct: 1128 FDANSILYKTLKTSGAHLADQIHGDEPVSRLVQGDEWRKTQPQLIRSVLCVPLISRNRML 1187

Query: 528  YSII-------PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
             +I           + + +    +V          T   + LR  D  K+ F+  +++EL
Sbjct: 1188 GAISFGMARSGRYFDTEDLQAAEDVASRFTVAMENTLLYDQLRATDRRKDEFLAMLAHEL 1247

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVEYISASSTILLNLVNDILDLATVDAGIMK 639
            R+PL  I    DLL      +L SK+ Q  +  +      L+ LV+D+LD++ +  G + 
Sbjct: 1248 RNPLAPIRSGLDLL------TLESKEDQPVLLVMKEQVEHLVRLVDDLLDVSRIMRGKID 1301

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            L   T  L +++    +++     E    + V    +      D  RL+Q+ S +L+NA 
Sbjct: 1302 LRKKTTELKEIIERAVEAVRWTFDEKQQTLTVSVPEESLPIFVDPVRLVQVVSNLLNNAS 1361

Query: 700  DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLG 757
             ++  G  + LK  +   +    V +NG  I  ++  +VF+ F  ++      + G+G+G
Sbjct: 1362 KYTDPGGNIDLKVEKAEDEVRVRVLDNGIGIEPELLPNVFDLFTQSSRALDRAQGGLGIG 1421

Query: 758  LSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
            L++V++ + +H G VS+ S   G  +    ++P 
Sbjct: 1422 LTLVQNLVEMHRGSVSVFSDGPGLGSEFLFQLPL 1455



 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 65/463 (14%), Positives = 146/463 (31%), Gaps = 43/463 (9%)

Query: 139  QSFDLVAETQNDCAIKIEGRVSGSC---AFLR-ILSLDGIYSELAETTLKCKKLSNHISV 194
            ++F          ++ + G  +      A L+ +  L    ++  +       L      
Sbjct: 619  RAFAGYPLIIEGHSMGVIGVFTSGVISPATLKDLAPLADTIAQYIQRKRGEDTLQEREQQ 678

Query: 195  FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE-----GIVFQKAIGESRKLFKEEIK 249
            ++ +F++ +  +   DQ G+I+ AN    +    E     G    + I +  +L      
Sbjct: 679  YRGIFEASNDAILIFDQEGNIVEANPFACQMHGYEYGEFIGKSASEIIDKQSELELTRFF 738

Query: 250  KRMISSSALEKNFCETVSTLEHGNNKSYKI----VRVLNSFGEAGIAIDVSKEITVNDQL 305
            +R+ S +     F + +   + G+    +I    ++         +  DV++      Q 
Sbjct: 739  ERVKSGTPF---FDQGIHVRQDGSPIHVEIQGSGLQYRGKPHLLTVVRDVTERRQAERQF 795

Query: 306  THTYE-----------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
                +           IL N    + +FD +    + N++ + +W       A   +  E
Sbjct: 796  LELTQESERQRRLYDTILSNALDQVYVFDLDHRFSYANQALLNMWGKSWEE-AIGKNCRE 854

Query: 355  LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            L        K  E+LN     +      ++  T  +   + +     V+           
Sbjct: 855  LGYPDWQVRKHSEELNQVILTKQPIR-GEAPVTGTNGRRIYDYIFYPVLGVDGEVEAIAG 913

Query: 415  MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
               ++T +   E           +  D + + V    P+G I   N  +       +N+ 
Sbjct: 914  TSRDVTDRKITENNLRQSEARFRQLADAMPQIVWTATPNGYIDYYNNRWYEFTGLAKNQH 973

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               +  R + +  + ++ E   W+      T+FD E +            +         
Sbjct: 974  GEDSWNRIMHSEDAAHWKE--VWNRSVDEGTAFDIEFRLYNRRTRSFEWYLGRAIPAQDE 1031

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
            +   +  F   TD  R +R            +E  + F+   S
Sbjct: 1032 DGDVVRWFGTFTDINRQKR------------NEQISDFLAEAS 1062



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/456 (14%), Positives = 157/456 (34%), Gaps = 63/456 (13%)

Query: 28  GTIAGMLLTTIIPIILLIRQ-RNSLAKKVNETYSFLSEICDQLSKYHSLLTEN-NCLTIV 85
            +++ +LL  +   I ++ + +       +     L  +   +    +++  N     + 
Sbjct: 94  SSLSVVLLLIVGVSIAVVNEMKKRAFATEDRRRKELQTLTSSI--ADAVIATNLEGRIVA 151

Query: 86  ----------WDGKDETPEIIGQL--HQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEK 133
                     W  +D     +G++   + +D P     L +    L    + ++      
Sbjct: 152 MNPVAEDLTEWSQRDAFGRALGEVFQGRNLDDPLEADALTAEAT-LTNDGFGQIKPMLLI 210

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
            R      ++  ET +       G V+G+    R          ++E     ++   +  
Sbjct: 211 SRS---GREVPVETNSAPIKDNGGLVTGAVFIFR---------NISERLKAERQQRTNEE 258

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
            F+ L  +   +VW     G+++  + +++  T      FQ +   +     +  +  + 
Sbjct: 259 RFRALIIATAEVVWTTSSTGEVVNDSPTWRAFTGQTLEEFQGSGWVNALHPDDRERTHLA 318

Query: 254 -SSSALEKNFCETVSTLE--HGNNKSYKI--VRVLNSFGE----AGIAIDVSKEITVNDQ 304
              +  +++  E    L+   G  +  K+  V VLN  GE     G+ ID++ E    + 
Sbjct: 319 WEQATRDRSLFEMEYRLQSAQGGYRWTKVRGVPVLNDRGEVLEWVGMNIDITHERLALES 378

Query: 305 LTHTYEILHNLTVAI--AIFDQNRYL--QFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L  + +    +  A   AI+D +        N     L+      +    S +  L+ + 
Sbjct: 379 LKASEQRYELVAEASNDAIWDWDLETDQILWNIGLQRLFGYAPDKIDV--SINWWLDHIH 436

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTL------HVIVTSNPRGG 411
                    + +  +E++  V+++ E   D    +   +G          V++ +     
Sbjct: 437 ED-------DRERVRESLDEVHQNGEERWDAEYHFERADGSFAYVYDRGRVVIQNGKAVR 489

Query: 412 TIWMFENLTVQVDLET---KYNTLVKVQGETIDHLS 444
            +    +LT Q   E    + + L  ++ +  + LS
Sbjct: 490 MVGSMLDLTEQKQTEQAMAERSRLADLRADVSECLS 525



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 84/292 (28%), Gaps = 22/292 (7%)

Query: 297 KEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +     D+     + L  ++  A+   +    +   N    +L E      +   +    
Sbjct: 117 RAFATEDRRRKELQTLTSSIADAVIATNLEGRIVAMNPVAEDLTEW-----SQRDAFGRA 171

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTLHVIVTSNPRG---- 410
           L  +     L + L                   K    +  +G+ + V   S P      
Sbjct: 172 LGEVFQGRNLDDPLEADALTAEATLTNDGFGQIKPMLLISRSGREVPVETNSAPIKDNGG 231

Query: 411 ---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
              G +++F N++ ++  E +  T  +     I   +E V      G +   +P +R+  
Sbjct: 232 LVTGAVFIFRNISERLKAERQQRTNEERFRALIIATAEVVWTTSSTGEVVNDSPTWRAFT 291

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
                       +  +        + +         +   +   +S QG          +
Sbjct: 292 GQTLEEFQGSGWVNALHPDDRERTHLAWEQATRDRSLFEMEYRLQSAQGGY-----RWTK 346

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              +P+ N +  +      +       L  ++    KA E +   V   S +
Sbjct: 347 VRGVPVLNDRGEVLEWVGMNIDITHERLALES---LKASEQRYELVAEASND 395


>gi|156036016|ref|XP_001586119.1| hypothetical protein SS1G_12694 [Sclerotinia sclerotiorum 1980]
 gi|154698102|gb|EDN97840.1| hypothetical protein SS1G_12694 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1309

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 15/240 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  +   + 
Sbjct: 717 REAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNIVHNLAN 773

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +    D  + 
Sbjct: 774 SLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNALKTLAVKANEKFLDLTYRVDSSVP 833

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              V D  RL QI   ++ NA+ F+  G  V L   +   D          F V + G  
Sbjct: 834 DHVVGDSFRLRQIILNLVGNAIKFTEHGE-VSLTIQKAEQDHCAPNEYAVEFCVSDTGIG 892

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F+ F        R   G GLGLSI +  +NL  G V + S     ++    
Sbjct: 893 IQADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMRGDVWVKSQYGKGSSFYFT 952


>gi|149280628|ref|ZP_01886742.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149228612|gb|EDM34017.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 731

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 158/373 (42%), Gaps = 31/373 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           + N L + +  T  HL +  A  G  +    + NP  R                  I +T
Sbjct: 117 RLNYLAQEKVRTKRHLVDLFAQTGRMNDTTSIGNPQARMTS-------------DEITST 163

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             R YN     +L   +     D      G    +  + L   ++               
Sbjct: 164 THRIYNSRQ--ELMQELTAKISD-----SGAKARMYGNSLIALLLLGGAGLCWFIIRQYR 216

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                 + L    +  R+A  +K +F+ ++S+E+R+PL +I+GFT+LL+      +    
Sbjct: 217 MQSLLIQKLDLSEKRAREALSVKENFLANMSHEIRTPLNSILGFTNLLQRRNADGV---M 273

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y+  I  +   LL ++NDILD++ ++AG+M++      +  LL+ V+   + ++    
Sbjct: 274 AHYIVSIQQAGENLLAIINDILDISKIEAGMMRIVNKPFSIRGLLHSVEVLFSERVKSKR 333

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIF 721
           +    + DG +  + + D  RL QI   +L N + FS KG         +   D+   +F
Sbjct: 334 LGYHTLVDGDVPDTLIGDATRLTQIMVNLLGNGLKFSEKGALRVGVKCKEVWPDHVVLVF 393

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            V +NG  I ++    +F RF            G GLGLSIV++ +++  G +S+SS   
Sbjct: 394 EVSDNGIGIEQEKLNQIFGRFNQADDSITRNYGGTGLGLSIVQNLLSIQHGDISVSSEAG 453

Query: 780 GVTTINCRIPSKE 792
             TT    IP ++
Sbjct: 454 KGTTFTFYIPYQK 466


>gi|78046888|ref|YP_363063.1| two-component system sensor/response regulator fusionprotein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035318|emb|CAJ22963.1| two-component system sensor/response regulator fusionprotein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 1068

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K G+L+++Q +Y 
Sbjct: 359 AQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVKYA 418

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669
           + I +S+  LL L+NDILDL+ ++AG ++L   T+V + +L  ++++      +      
Sbjct: 419 QAILSSNNDLLALINDILDLSKIEAGHVELADETVVTDSVLQRLRETFEPLARQKGLALE 478

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              + G     V D QRL QI   +L+NA+ F+  G   +   A   G   F+V + G  
Sbjct: 479 IAAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKVSLTVQAHAPGRVHFAVTDTGIG 538

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 539 IAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLE 598

Query: 788 IPS 790
           +P+
Sbjct: 599 LPT 601


>gi|114565936|ref|YP_753090.1| sensory box histidine kinase/response regulator [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114336871|gb|ABI67719.1| Hpt sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 497

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 10/231 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  K+ F+ ++S+E+R+P+  I+G  DLL  S    L+ +Q+  +  I      LL +V+
Sbjct: 21  DMAKSQFLANMSHEIRTPIIGILGSLDLLDQS---DLSQQQATNISIIRECGEQLLQIVD 77

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADR 684
           +ILD++ +++  +  N     L +L+      + T +    +  K+  D ++ +  + D+
Sbjct: 78  NILDVSKIESDPVTPNLEPCNLGELIIATVNRVDTLLKRKGLDFKLNIDSRIPAKIMLDK 137

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNR 741
            +L Q+   +L N++ F+ +G  V LKA    GD    +F++ + G  IP    + VF  
Sbjct: 138 TKLQQVLLNLLYNSIKFTPQG-RVELKAKIQPGDSYRLLFTISDTGIGIPSSFVERVFEP 196

Query: 742 FVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F    +    Q  G GLGL I +  + L  G +S+SS     TT++  IP 
Sbjct: 197 FTQADNSNSRQYGGAGLGLYICKKLLELMEGEISLSSMPGVGTTVSFSIPL 247


>gi|332829689|gb|EGK02335.1| hypothetical protein HMPREF9455_01605 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1351

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 125/280 (44%), Gaps = 12/280 (4%)

Query: 517  TLELLSDSVLEY----SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI---K 569
            T+E+L    L +    S I L      L    +   ++ +  L  +    +K +E+   K
Sbjct: 778  TIEILPPVWLTWWAKVSYIILGILLLSLVMWVIYIRLKDKNELNIERLKAKKQEELNLTK 837

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
              F  ++S+E R+PLT II     LK  +    N K++  ++ +  ++  LL L+N ILD
Sbjct: 838  MQFFTNISHEFRTPLTLIISP---LKEIEQTEPNQKRAHLMKMMLRNADRLLRLINQILD 894

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
            L  ++   ++++   I L   + +        +    I +    + +      D   L +
Sbjct: 895  LRKIEYDKIQVHARPINLVLFVQDFVGLFTDIIDRKQISVSFNYEAREIPIWYDPDLLEK 954

Query: 690  IFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
                +L NA+ ++  G+++ L   + ++G  +FS+++ G  I  +    +F+RF   +  
Sbjct: 955  CLYNLLFNALKYTPDGNSIFLSIKQKNDGSVLFSIRDTGCGIAPEDLPHIFDRFYQGSFS 1014

Query: 749  GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             Q  G G+GL +V++ + LH G V + S     +     I
Sbjct: 1015 -QNSGTGIGLHLVKTIVELHHGKVWVESEVGAGSNFTLYI 1053


>gi|320334823|ref|YP_004171534.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
 gi|319756112|gb|ADV67869.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
          Length = 1006

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 129/867 (14%), Positives = 273/867 (31%), Gaps = 137/867 (15%)

Query: 36   TTIIPIILLIRQR--NSLAKKVNETYSFLSEICDQLSKYHSLLTENN----------CLT 83
                  + L R R  N L  ++    +   E+    +++  L+  +            L 
Sbjct: 162  LAAQCALALGRARLLNELTTELEMRRATERELQSSETRFRRLVEASPVGIAAGDINGRLI 221

Query: 84   IVWDG--------KDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
            +V D         +D+  +              + D  +F+    F          E L 
Sbjct: 222  LVNDAYLHLLGYTRDDFDQGRIDWASLTPEEYREADDRAFQQ--AFRDGASDQYEKEMLT 279

Query: 136  KEGQSFDLVAETQNDC------------AIKIEGRVSGSCAFLRILSLDGIYSELAETTL 183
            + G+   L                     ++       +    R      +    AE   
Sbjct: 280  RTGERLPLSLILMRYEERGQQLVVGYLQDLRAHRAAQRTLEEQRGHLEAKVRERTAELEA 339

Query: 184  KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL-----------------WANISYKKNT 226
            + + L +   + + L    D  V  R     +L                 W   +  +  
Sbjct: 340  RTRALESFAELTRDLATETDPSVLVRRAQEIVLGLLPEGLAVYYEPRRQLW--HAAVQTG 397

Query: 227  ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET--------------------V 266
            +      Q+AI        E  +  +      +  + +                     +
Sbjct: 398  DLGNADLQRAINAGLPF--ETTRNLLTPWRTRQGYYQDHYDPTTDDLGERVAHIGASASL 455

Query: 267  STLEHG------------NNKS--YKIVRVLNSFGEAGIAID----VSKEITVNDQLTHT 308
              L HG             ++        +  +    G+A++    ++       +++  
Sbjct: 456  PLLVHGRVQGVFVIALFRQHRWSTTDRAVLETAVHSLGLALERAESIAHLEQRTQEVSRW 515

Query: 309  YEILHNLTVAIAIFDQNRYLQFHNR---------SFVELWEIDLAFLATNPSNDELLEFL 359
             E        +A+      L   N          +   +       LA N S+       
Sbjct: 516  RERYE-----VAVNGSGHLLYDWNPTTDQIVYGGAVRAITGYAPDDLAGNLSDW------ 564

Query: 360  RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIVTSN----PRGGT- 412
                +L    +   +   I  V + S+T    + +   +G    V         P G   
Sbjct: 565  --TERLIHPDDRDAFNTEIARVIEHSDTFHLEFRIVRQDGSVREVQDDGYFMRGPDGQVT 622

Query: 413  --IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKT 469
              +    ++T Q   E +    ++     ++++ EG+      GR   +NPA  R L  T
Sbjct: 623  HMVGFVNDVTEQRRTERELRAALRFNELILNNMGEGLTGMDTQGRTTFANPAALRMLGYT 682

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             E  +    H              ++   ++AA                   S   ++Y+
Sbjct: 683  PEEFIGVPQHELIHHTRPDGTPYPAEACHIYAAFTDGQVHHVDDEVFWRRDGSAVPVDYT 742

Query: 530  IIPLPNAQTML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              P+ N    +     +F ++T    AE  L   NE LR+++     F    S++L++P 
Sbjct: 743  STPIRNEHGHIEGAVLSFRDITARRSAEADLRRSNEELRRSNRELEQFAYIASHDLQAPA 802

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
              +  F D++       L+ +   Y+  I+     +  LV+D+L  + V    ++     
Sbjct: 803  RAVTSFADIIARRYAHVLDERGLTYLRQITEGGQHMKRLVDDLLTFSRV--HTLQRPPER 860

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            +    + + V   ++  +  +  ++     G L   +AD  +L Q+   ++ N + +  +
Sbjct: 861  VHSASIFSAVLARLSGDLEASGAQVT---AGPLPDVLADASQLDQVLQNLILNGVKYRRE 917

Query: 705  G--STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
                 + + A  D   + F V++NG  I E   + +F  F     R Q  G G+GL++ +
Sbjct: 918  DVAPRLHVSAQPDGPMWHFLVQDNGIGIEEAYFERIFEIFQRLHTRDQYEGTGIGLAVCK 977

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
              I  HGG + ++S+    +T +  +P
Sbjct: 978  KIIERHGGRLWVTSTPGEGSTFHFTLP 1004


>gi|225866653|ref|YP_002752031.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225790643|gb|ACO30860.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 484

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +  HGG +   S     T+I   +
Sbjct: 444 LGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSL 476


>gi|148252242|ref|YP_001236827.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146404415|gb|ABQ32921.1| Sensor histidine kinase with a response regulator receiver domain
           (two-component signal transduction system)
           [Bradyrhizobium sp. BTAi1]
          Length = 1124

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 113/255 (44%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R +  L    E    A+  K+ +V  +S+ELRSPL  I G+  LL+ 
Sbjct: 641 QTQLLIQEIEAHKRTDAELQRAKEVAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               SL  K    V  +  S+  L  L++ ILD++ ++AG + L+   + L++ L+++  
Sbjct: 701 D--TSLAPKPRDQVRVVRRSADHLSGLIDGILDISKIEAGRLYLSRDEVRLSEFLDQLVG 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     I         L   V AD +RL QI   +LSNA+ F+ +GS V       
Sbjct: 759 MFRLQAAAKGIDFVFKRPAVLPLVVYADEKRLRQILINLLSNAIKFTQEGS-VQFVVHYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           +    F V + G  I  D  + +F  F   A    +   G GLGL+I      + GG + 
Sbjct: 818 SPVAEFEVIDTGPGIQPDDLERIFAPFERGALGAAQPQTGTGLGLTISRLLAGVMGGDIK 877

Query: 774 ISSSDEGVTTINCRI 788
           + S     +T   +I
Sbjct: 878 VESKVGLGSTFKVKI 892


>gi|420780|pir||A46414 histidine protein kinase divJ - Caulobacter crescentus
          Length = 596

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 151/363 (41%), Gaps = 12/363 (3%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +Y + +      +D L          G++     A               T    +    
Sbjct: 198 RYASEIIGLETLLDGLPHLAIAVRGQGQVTAVRGAA----------PPGVTRADLVNRGL 247

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +      D   L AAI  +  +   SL     L  + V+   +  +   Q +    ++T 
Sbjct: 248 TGAAAPGDRQRLTAAIAQAHREGSASLTFNPALGVERVVALDMHRVAPNQLVGVLRDITV 307

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E A              +  F+ ++S+ELR+PL  I+GF+D+++    G L+ + +
Sbjct: 308 ERHREHA-RPGAIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYA 366

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y E I  S   LL+L+ND+LD++ ++A   +L        + +    + +  +     +
Sbjct: 367 EYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGV 426

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +++ +         ADR+ L QI   ++SNA+ F+ +G  V + A   +G     V + G
Sbjct: 427 QLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTG 486

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  +  + +   +       QR RG GLGLS+V +F  L GG + I S     TT++ 
Sbjct: 487 VGISPEDLERLGRPYEQAGGAEQRARGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSV 546

Query: 787 RIP 789
           R+P
Sbjct: 547 RLP 549


>gi|116627885|ref|YP_820504.1| sensor histidine kinase [Streptococcus thermophilus LMD-9]
 gi|116101162|gb|ABJ66308.1| Signal transduction histidine kinase [Streptococcus thermophilus
           LMD-9]
 gi|312278466|gb|ADQ63123.1| Sensor protein [Streptococcus thermophilus ND03]
          Length = 446

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 142/386 (36%), Gaps = 32/386 (8%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L               + ++S+GV      G+I + N   + L    +   
Sbjct: 74  LNDLSDVFRLTHENLIQEKNRLSSVLSYMSDGVIATNRLGQITMINSTAQRLLNL-DRET 132

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +    I +I    + Y       +L +         R +    + L     + +++I   
Sbjct: 133 ATQMSILDILDGENPY----TYSELLSKTPEIHLSRRDANDEFVTLR----VNFALIRKE 184

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 185 SGFISGLVAVLHDATEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 233

Query: 595 KTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                G+LN + +  +++     +  ++ +++D+L L+ +D    +LN         +  
Sbjct: 234 DD---GALNEEIAPNFIKVSLDETNRMMRMISDLLALSRIDNKSTQLNVEMTNFTAFMTY 290

Query: 654 VKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +         +      +  I             D  ++ Q+   IL+NA+ +S  G  +
Sbjct: 291 ILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKMTQVIDNILNNAIKYSPDGGKI 350

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            +     +   I S+ + G  IP+     +F+RF          + G GLGLSI +  + 
Sbjct: 351 TVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVK 410

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            H G +   S     +T    +P  +
Sbjct: 411 QHNGFIWAKSEYGKGSTFTIVLPYDQ 436


>gi|225027608|ref|ZP_03716800.1| hypothetical protein EUBHAL_01865 [Eubacterium hallii DSM 3353]
 gi|224955064|gb|EEG36273.1| hypothetical protein EUBHAL_01865 [Eubacterium hallii DSM 3353]
          Length = 690

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 127/272 (46%), Gaps = 10/272 (3%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           V+ Y    L      L F       + E  L +  E  + A E K  F+ ++S+++R+P+
Sbjct: 266 VVSYVYSLLVATVFYLIFSKKHRERQYEAELKKSAEQAKNASEAKTRFLFNMSHDIRTPM 325

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+GF+ LL+ +       K  +Y+  I +SS +LL ++N IL++A +++G   L    
Sbjct: 326 NAIVGFSGLLEKNLQN--EKKAKEYLGKIQSSSNLLLMIINQILEMARIESGTAVLQLKA 383

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             ++ L + V       + + N++     D +    V D+ +L +I   I+SNA+ ++ +
Sbjct: 384 EDMDALFHRVNTVFEEDIRKKNLQYYADLDIRHHYVVCDQTKLQEIMLNIISNAIKYTPE 443

Query: 705 GSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
           G ++ ++      +      +IFS ++ G  + E+    V+  F       + +  G GL
Sbjct: 444 GHSIYVEIHEAASENPSKIHYIFSCEDTGIGMSEEYLPHVYEEFSREHTTTENKVQGTGL 503

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLSI++S I L  G + + S     T     +
Sbjct: 504 GLSIIKSMIELMDGSIQVESRQGIGTKFTVDL 535


>gi|254473454|ref|ZP_05086851.1| histidine kinase sensor protein [Pseudovibrio sp. JE062]
 gi|211957570|gb|EEA92773.1| histidine kinase sensor protein [Pseudovibrio sp. JE062]
          Length = 463

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 4/249 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSK 605
           +  +      E      +A+  K  F+  +S+ELR+PL  I+GF++++K   LG + N  
Sbjct: 188 EMEQVNAISQEARRRAEEANLAKTRFLATMSHELRTPLNAILGFSEVMKDEVLGPMHNQT 247

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y + I+ S   LLNL+N+ILDL+ ++AG  +L    + L D+    K  +  +    
Sbjct: 248 YLDYSKDINQSGQHLLNLINEILDLSRIEAGRYELQEEPVCLRDVAAACKHMMHMRAAAK 307

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVK 724
           NI I  + +  L    AD + L Q+   +L+NA+ F+     + +    D  G    SV 
Sbjct: 308 NIEIHEVYEKGLSKVWADEKALRQMVLNLLTNAVKFTPPEGEISIHVGIDGAGGQYISVS 367

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G+ IPE+    V   F       Q   +G GLGLSIV++  ++H G   ++S     T
Sbjct: 368 DTGAGIPEEEIPVVLQAFGQGTQAIQDAEQGTGLGLSIVQALAHMHEGEFKLASKLREGT 427

Query: 783 TINCRIPSK 791
                +P+K
Sbjct: 428 QATISLPAK 436


>gi|52144035|ref|YP_082793.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977504|gb|AAU19054.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 466

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +      LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  IRI    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++ +   +++   + +     S+K+ G  I ++  +++  RF        
Sbjct: 358 LHNVLDNAIRYTHQNGDIMITLRQIDDYCELSIKDTGIGIDKEHLENLGERFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKL 457


>gi|153869957|ref|ZP_01999457.1| Serine/Threonine protein kinase and Signal Transduction Histidine
           Kinase (STHK) with GAF sensor [Beggiatoa sp. PS]
 gi|152073580|gb|EDN70546.1| Serine/Threonine protein kinase and Signal Transduction Histidine
           Kinase (STHK) with GAF sensor [Beggiatoa sp. PS]
          Length = 784

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 123/267 (46%), Gaps = 21/267 (7%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              + +A R   +  + +  A+  K++F+ ++S+ELR+PL  I+G++++++     S  +
Sbjct: 512 HFAAEQARRIAEQTRQNVEAANRAKSTFLANMSHELRTPLNAILGYSEMIQEEAQESGYN 571

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
                ++ I  +   LL +++DILD++ ++A  ++L+ S   +  L+ E+  +I   +  
Sbjct: 572 DILPDLDKIQIAGIQLLGIISDILDISKIEAEKLELDLSEFAVTYLVEEMVTTIQLMIEM 631

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-------- 716
               + +    +LG   AD  ++ QI   +L+NA  F++ G T+ L   R          
Sbjct: 632 GGNTLNIEWGNELGMLYADYHKVGQILLNLLNNAGKFTNHG-TITLTITRKKLSLGKGNN 690

Query: 717 ----------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESF 764
                         F + + G  IP +    +F  F    +   R   G GLGL+I E F
Sbjct: 691 KSNSKNKAFSEWIFFQIADTGVGIPPEQMNHIFEPFTQGDNSSTREYGGTGLGLTISEYF 750

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
               GG++ +SS     +    ++P +
Sbjct: 751 CRAMGGNLLVSSEVGKGSVFTVQLPIR 777


>gi|32477451|ref|NP_870445.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
 gi|32448002|emb|CAD77522.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
          Length = 718

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 167/389 (42%), Gaps = 26/389 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----------- 469
             +    +     ++    I      V V   DGR++L N A  +++             
Sbjct: 191 ELIAAAERERDHARMFQTMIQASPLSVIVMDYDGRVELWNEASEAIFGWTSAEVLGYPLP 250

Query: 470 --EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
              +++L     IR+     S +       D + A     + ER+++   +  +S    +
Sbjct: 251 IIPDHKLDECQRIRDAVGDGSVFRC----VDTYRAKGEDANGERRTVHVNVSAVSLHRYD 306

Query: 528 YSI--IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                I L       +  +  +  R  R L ++   L + DE KN F+  +++ELR+PLT
Sbjct: 307 GHSDRILLIIDDVTQSHADTLERERLFRELQKEKALLSEMDERKNRFLALLAHELRNPLT 366

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I    DLL+ +      ++ ++    + +    L+ L++D++D++ +  G + L   T+
Sbjct: 367 PIGNAVDLLRFAAKDP--NQVNEISTVLESQVHQLVRLIDDLMDVSRITRGRIDLQRETV 424

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSK 704
            ++D++    +++ +  +E    +   +D +       D  RL Q+ + +L+NA  ++  
Sbjct: 425 SIHDIVANSCRAVESLCNEMGHELIRRTDPEQSLHVHGDYVRLTQVVTNLLNNACKYTPP 484

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVE 762
              + +   + +G    +VK+NG  IP +  K +F  F          R G+G+GL++V+
Sbjct: 485 SGRIEISCGQVDGQVEIAVKDNGVGIPPEHRKGIFEMFTQVDETLKDSRGGLGIGLTLVK 544

Query: 763 SFINLHGGHVS-ISSSDEG-VTTINCRIP 789
             + LHGG VS + S D    +     +P
Sbjct: 545 QLVELHGGRVSLVDSDDTSTGSEFRIHLP 573


>gi|169348400|ref|ZP_02866338.1| hypothetical protein CLOSPI_00115 [Clostridium spiroforme DSM 1552]
 gi|169293869|gb|EDS76002.1| hypothetical protein CLOSPI_00115 [Clostridium spiroforme DSM 1552]
          Length = 407

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 161/374 (43%), Gaps = 31/374 (8%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           EN   +V+ E  +N   K+    I  ++  +      G I  +N +FR  +         
Sbjct: 60  ENEIREVEGEKDFN--HKILNSLIKTMNLPMIFINCKGTIIFTNQSFRDAF--------- 108

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                NI     +YY +     L   +  S+  ERK    T+  +++   +    P+   
Sbjct: 109 -----NIKHLRGKYYKDIFVGQLLNVVDQSYVFERKF--STVTEINERYYQIESTPVFRN 161

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++      +         L      +++ ++++  F   +S+EL++P++ IIG  ++L+ 
Sbjct: 162 ESFFDGSII---------LFTDVSQVKEIEKMQKQFFSDISHELKTPMSAIIGSVEILQK 212

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             + +      +++  +   S  + N++ DIL+L+ ++   + L+   I ++ ++ +  +
Sbjct: 213 EGIQN-KETFDEFMGILLKESYRMQNIIEDILELSRLEQPRVTLSPKLIDVDSIVKDTVE 271

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
                  + ++ +   +       + D   +  I + ++SNA+ +S+ G  + +KA  D 
Sbjct: 272 LFEPLAKDKHLSMFYQT-KVSKELMLDYATVKTILNNLVSNAIKYSNSG-VISIKAFNDK 329

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSIS 775
                 V++ G  I +D    +++RF        ++ G GLGLSIV+  + L+ G++S+ 
Sbjct: 330 DKLTLVVQDEGIGISKDDIPLIYDRFFQVDRSRSKKLGTGLGLSIVKRMVELNNGNISVE 389

Query: 776 SSDEGVTTINCRIP 789
           S     +     +P
Sbjct: 390 SDQGIGSVFTVVLP 403


>gi|219667788|ref|YP_002458223.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219538048|gb|ACL19787.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 356

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 6/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            A+ +    L   + ++  F+ +VS+E++SPLT+I GF  LLK   L +   ++ +Y E 
Sbjct: 117 EAINDMARGLGNLETMRQDFISNVSHEIQSPLTSISGFAGLLKKEDLSA--EQRRRYAEI 174

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   S  L +L  ++L L T+D   + LN     L+  L  V   +  +    N+ ++  
Sbjct: 175 IEGESKRLSSLSENLLKLTTLDNSKLPLNRQDFRLDKQLEHVALLLEPQWSAKNLTLE-- 232

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           ++  L     D   L Q+++ +L NA+ F+ +G  + +   ++      ++ + G  I  
Sbjct: 233 AELPLCILCGDEDLLSQVWTNLLHNAIKFTPEGGQISIGLKQEGDAAQVTIGDTGIGIGP 292

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F RF        R   G GLGLS+V+  ++LHGG + + S+    TT    +P
Sbjct: 293 EDRIHIFERFYKADKARARSAGGNGLGLSLVKKIVDLHGGSIRVESTIGEGTTFEVFLP 351


>gi|289662747|ref|ZP_06484328.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 291

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 43  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 102

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S+  L  +V+D+LDLA ++AG + ++     L DL   ++             +    
Sbjct: 103 SGSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDTGKTMLVFDD 162

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  I  +
Sbjct: 163 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGIAAE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++F  FV      Q+R  G GLGLSI + F  L GG V ++S     +     +P
Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGVNSVPGQGSEFYVVLP 280


>gi|114324578|gb|ABI63596.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1223

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 109/239 (45%), Gaps = 13/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  +   + 
Sbjct: 627 REAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAG 683

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      +   +    +S+A++ +E  + +      K+ 
Sbjct: 684 QLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSYKVP 743

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSI 730
              V D  RL QI   ++ NA+ F+  G   V +  A++         F F+V + G  I
Sbjct: 744 DYVVGDSFRLRQIILNLVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTGIGI 803

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             D    +F+ F        R   G GLGLSI +  + L GG + + S     +     
Sbjct: 804 RGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFYFT 862


>gi|78063726|ref|YP_373634.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77971611|gb|ABB12990.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 1003

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 147/372 (39%), Gaps = 22/372 (5%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +           I     G+ +    DG   + N A  +      + L  G  I      
Sbjct: 388 RLIESEAFNRTLIRTAPAGLLLLSAADGETMVRNDAVLAYDDGV-SGLPLGKRIWQACRE 446

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             R   +   + +   +      ER     T         ++  + +     + T  +VT
Sbjct: 447 RQRAGADERRFVMQQELAV----ERAGHDTTYLAAHVVRTKFRGVDV----LLCTLTDVT 498

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                E  L E   A   A++ K++F+  +S+E+R+PL  IIG  +L+       L   +
Sbjct: 499 ARKLTEDKLREARVAADDANKAKSTFLATMSHEIRTPLNAIIGNLELMGR---AELPPTE 555

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ I +SS  LLN++ND+LDL+  ++  M L +    L  +L +V            
Sbjct: 556 QRRLKTIVSSSDALLNIINDVLDLSKAESNQMALEHIPFDLRRVLQDVASIFRPLADAKG 615

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FI 720
           + ++     +L   +V D  RL Q+ S ++ NA+ F+  G  + + A    GD       
Sbjct: 616 LSLECHVAAELADGYVGDPTRLRQLVSNLVGNAIKFTEHGG-ITIDARLARGDARAGCVE 674

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +V++ G  IP +   ++F+ ++        +  G GLGL +      L  G +++ S  
Sbjct: 675 IAVRDTGVGIPGEALPTLFDVYMQADASIYRRFGGTGLGLPLCRRIARLMDGELTVESRL 734

Query: 779 EGVTTINCRIPS 790
              +T    +P 
Sbjct: 735 GEGSTFVATLPL 746


>gi|86146268|ref|ZP_01064593.1| hypothetical protein MED222_16191 [Vibrio sp. MED222]
 gi|85835979|gb|EAQ54112.1| hypothetical protein MED222_16191 [Vibrio sp. MED222]
          Length = 565

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +++     FV  +++ELR+PL  ++G  +L+  ++   L+S Q + V  +S S  
Sbjct: 195 RKRAEESERATRDFVAMINHELRTPLNGLLGSAELISDTE---LSSSQREIVNNLSQSGE 251

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677
            L  ++ND+LD + ++AG+++L   T  L DL N +      +  E  I+  V ++DG  
Sbjct: 252 FLRTIINDLLDYSKINAGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVP 311

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             F  D +R+ Q+F  ++ NA+ F+ +G  V ++    N  FIFSV+++G  I +   K+
Sbjct: 312 SHFYGDLERITQLFVNLIGNAIKFTDQGH-VSVEIKWLNDQFIFSVEDSGVGIAQSAIKT 370

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F    +   R   G GLGL+I      L  G + +SS     TT    +P +
Sbjct: 371 LFEPFTQADNSSSRNYEGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLPLQ 426


>gi|319938401|ref|ZP_08012796.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1]
 gi|319806489|gb|EFW03153.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1]
          Length = 562

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 163/383 (42%), Gaps = 40/383 (10%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKV-QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            +    NL+ ++    +   L ++   E +  ++EG  +   + +I   N    S+    
Sbjct: 212 IVNTIGNLSHRLRKSMREVKLERIKMDEILKQMNEGFVLLDENYKILSINAKATSILGNM 271

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           +       ++                   +  II + ++     +  ++ ++ ++    I
Sbjct: 272 KTYDQFMDYL------------------YYPEIINALENNIPKQEIEIK-INHNIYACYI 312

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
             +    T+               L       +KA+++++ F  +VS+EL++P+T+I G+
Sbjct: 313 SRIDLGTTL---------------LFVDITVAKKAEKMRSEFFSNVSHELKTPMTSIRGY 357

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +DLL    +     K    +E I      +  L+NDIL L+ ++   +++    + +  L
Sbjct: 358 SDLLVQGLVHDETQKH-MMLEKIQEEVNSMSTLINDILMLSRIENMDIEVEMMPMKMKGL 416

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++EV +S   ++ +++I +   +D    +++ + Q++  + + ++ NA+ ++     V +
Sbjct: 417 VDEVLESYQVELSKHDITMH--TDFTDLTYIGNHQQIYTLLNNLIGNAIKYNIDHGHVFV 474

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
                      +VK+ G  IP      +F RF         QR G GLGL+IV+  ++ +
Sbjct: 475 NVEDQGQAMKVTVKDTGIGIPLADQSRIFERFYRVDKGRSKQRGGTGLGLAIVKHIVSHY 534

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G + ++S     TTI   +P +
Sbjct: 535 KGVIHLTSELGQGTTIEIILPQQ 557


>gi|295705390|ref|YP_003598465.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294803049|gb|ADF40115.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 460

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 119/235 (50%), Gaps = 6/235 (2%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             ++L + +E++  FV +VS+E++SPL +I GF+  L+++ L   + ++++Y+  I   S
Sbjct: 229 MAKSLEQLEEMRQEFVSNVSHEIQSPLASIQGFSKTLRSANLS--DEQRNEYLSIIEEES 286

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             + +L   +L LA++D     +  ST  +   + +V         E  + I++     +
Sbjct: 287 RRMSSLSKQLLTLASLDKESEHIEKSTFDVAAQIKQVLFMTEWSWREKELAIEMDLPSTM 346

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D++ L Q+++ +++N++ F+ +G T+ L+   ++       ++ G  I ++    
Sbjct: 347 --ISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRIGMEDTHCHVEFQDTGIGISKESLPH 404

Query: 738 VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +FNRF     A        GLGL+IV+  + +HGG + + S     +T +  +P 
Sbjct: 405 IFNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKGKGSTFHVYLPK 459


>gi|254421413|ref|ZP_05035131.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188902|gb|EDX83866.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 396

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 164/389 (42%), Gaps = 28/389 (7%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE-ENRLSPGTHIRNIA 484
           +T+  TL +     ++ + EGV     +G +   NPA  ++   + E+ +    H     
Sbjct: 7   QTELVTLRRQYQLILNSVGEGVYGLDLEGNVTFVNPAAAAMIDWDIEDLIGQSMHRVLHH 66

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-----TM 539
           +     +   +   ++AA+         +     +  ++  +EY   P+ + Q      +
Sbjct: 67  SYLDGTHYHRESCPIYAALHDGSTHRVTNEVFWRKDGTNFPVEYISTPMRDEQKQVIGAV 126

Query: 540 LTFVNVTDSVRAERALTEKNE------------------ALRKADEIKNSFVQHVSYELR 581
           +TF ++T    AE  L + NE                   LR+   +K+ FV  V +E R
Sbjct: 127 VTFRDITQRKWAETVLQQTNEDLEEKVRSRAAELYTANAHLRELSALKSRFVSMVCHEFR 186

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL NI      L         +++ +Y+  I+ +   + ++++DIL L  ++A  + L+
Sbjct: 187 NPLNNIALSVSSLGRYDEKLTQTQKQKYLLGIATNVERMTHMIDDILVLGKLEAKRLSLS 246

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              I L D  +++   I      NN R++     +      D+  L  I + ILSNA+ +
Sbjct: 247 PRPIDLADFCHQLLLEIQP----NNRRLEFTGRFRSLVAEIDQTLLRSILTNILSNAIRY 302

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
           SS GS V L   +     IF +K+ G  I  +    +F  F    +     G GLGLSIV
Sbjct: 303 SSAGSLVQLSLYQRKHQAIFQIKDQGLGILPEDYPYLFEPFHRGRNVSNIPGTGLGLSIV 362

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + F+ L  G + + S     TT   R+P 
Sbjct: 363 KQFVALQQGDIKVESQPGIGTTFKIRLPL 391



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 92/304 (30%), Gaps = 39/304 (12%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           + ++ +T+  Q      IL+++   +   D    + F N +   + + D+  L     + 
Sbjct: 6   EQTELVTLRRQYQL---ILNSVGEGVYGLDLEGNVTFVNPAAAAMIDWDIEDLIGQSMHR 62

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK---DTWHLPNGQTLHVIVTSNPRG 410
            L       +   +  ++      I++      TH+   + +   +G    V   S P  
Sbjct: 63  VL------HHSYLDGTHYHRESCPIYAALHDGSTHRVTNEVFWRKDGTNFPVEYISTPMR 116

Query: 411 -------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
                  G +  F ++T +   ET      +   E          V      +  +N   
Sbjct: 117 DEQKQVIGAVVTFRDITQRKWAETVLQQTNEDLEEK---------VRSRAAELYTANAHL 167

Query: 464 RSLWKTEENRLSPGTH-----IRNIAATCS------RYYNESDGWDLFAAIITSFDDERK 512
           R L   +   +S   H     + NIA + S          ++        I T+ +    
Sbjct: 168 RELSALKSRFVSMVCHEFRNPLNNIALSVSSLGRYDEKLTQTQKQKYLLGIATNVERMTH 227

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +   L L        S+ P P          + +     R L           EI  + 
Sbjct: 228 MIDDILVLGKLEAKRLSLSPRPIDLADFCHQLLLEIQPNNRRLEFTGRFRSLVAEIDQTL 287

Query: 573 VQHV 576
           ++ +
Sbjct: 288 LRSI 291


>gi|161509720|ref|YP_001575379.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|160368529|gb|ABX29500.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|269940983|emb|CBI49367.1| sensor kinase SrrB [Staphylococcus aureus subsp. aureus TW20]
 gi|302751323|gb|ADL65500.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|323439507|gb|EGA97228.1| respiratory response protein B [Staphylococcus aureus O11]
 gi|323441525|gb|EGA99176.1| respiratory response protein B [Staphylococcus aureus O46]
          Length = 564

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 205 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 262

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 263 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 315

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 316 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 349

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 350 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 408

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 409 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 467

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 468 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 527

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 528 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 564


>gi|302333163|gb|ADL23356.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 583

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 159/397 (40%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDDKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 428 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +  A +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCAENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 583


>gi|167839922|ref|ZP_02466606.1| two-component hybrid sensor and regulator, putative [Burkholderia
           thailandensis MSMB43]
          Length = 1084

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 10/245 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E  + ++   L++A+  K+ F+ ++S+ELR+PL  I+G+    +         +Q +  
Sbjct: 602 LEERVRQRTRELQEANRAKSIFLANMSHELRTPLNAILGYAQWFRRDAAAG--ERQVRAA 659

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S   LL L+ DILDLA ++AG + L      L+ +L+ V   I  K  E  +   
Sbjct: 660 SIIKQSGEHLLMLITDILDLAKIEAGKLDLCPGPAGLDGVLSSVMDIIRVKSEEKGLACV 719

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVK 724
           + +   L      D +RL Q+   +L NA+ F+S+G  V L+      A +     F V+
Sbjct: 720 LDAASDLPPSVWIDDKRLRQVLLNLLGNAVKFTSRG-RVELRVSLLQPADELARVRFEVR 778

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  I  D   S+F+ F        R  G GLGLSI    + L GG + + S     + 
Sbjct: 779 DTGVGIAHDRLTSIFDPFEQAGEAQSRAGGTGLGLSISRQLVRLMGGEIEVESEPGAGSR 838

Query: 784 INCRI 788
               +
Sbjct: 839 FWFDL 843


>gi|126666595|ref|ZP_01737573.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
 gi|126628983|gb|EAZ99602.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
          Length = 947

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 26/265 (9%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +   A+            A   K+ F+ ++S+E+R+P+  +IG++DLL  +     + +Q
Sbjct: 577 ELRAAKIEAERLAREAEAASRTKSEFLANMSHEIRTPMNAVIGYSDLLSNTV---TDPQQ 633

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ I A S  LL L+NDILDL+ ++AG M+L+Y+ + +  +L +V      +  +  
Sbjct: 634 RNYLDAIRAGSRALLMLINDILDLSRIEAGKMRLDYAPVSMRRMLGDVLHIFDLRARDQG 693

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA------------- 712
           + ++V    K+  + + D  RL Q+   +  NA+ F+ +G  V ++A             
Sbjct: 694 VTLEVSVGKKMPAALMLDETRLRQVLFNLAGNAIKFTHEGG-VTVRAKASPLPKQSYPPG 752

Query: 713 ------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESF 764
                          +V + G  I  D  + VF+ F      +  +  G GLGL+I    
Sbjct: 753 TKPGEPEHPRYRLEITVTDTGIGIATDQQERVFDAFEQQEGQNSRRYGGTGLGLAISRKL 812

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
             + GG +++ S+ +  +     +P
Sbjct: 813 ALMMGGELTLKSTLDEGSVFKLILP 837


>gi|77465058|ref|YP_354561.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389476|gb|ABA80660.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 813

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 151/354 (42%), Gaps = 23/354 (6%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             + ++  V +    GRI+  N A   L+  +    S            +  + +  G+D
Sbjct: 198 IFESMNNPVLLVDDGGRIENMNFAAARLFLQDALPGSVYY-----GPEANLRFADLAGFD 252

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN--AQTMLTFVNVTDSVRAERALT 556
           L A  +      R      L  + +     +   + +   + +   V   D   A RA  
Sbjct: 253 LEAVKL------RGEAGDVLTCIGERWYSITAQEMLDVSRKFVGIVVTFHDVTEARRA-- 304

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
              E        K  F+  +S+E+R+P+ +I G T+LLK S+L S +     YV+ I  S
Sbjct: 305 --REQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSELASRD---RGYVDAIERS 359

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           + +L ++V+D+LD A +++G+++L      ++ +L++V + +   +        VI    
Sbjct: 360 TEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMMQPLVRRKPQLRIVIERTD 419

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSSIPEDMC 735
           L   + D  +L QI   + SNA+ F+ +G+ VI       G  F F+V + G  I  +  
Sbjct: 420 LPPVLGDAGKLRQILINLTSNAVKFTPEGTVVIGAERLAGGHRFRFTVSDTGPGIAAEKL 479

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +F  ++ +     RR  G GLGL+I        GG + + S+    +     
Sbjct: 480 EEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLDVRSTPGFGSRFTLE 533



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 49/149 (32%), Gaps = 8/149 (5%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             + ++      I  ++   + + D    ++  N +   L+  D    +     +  L F
Sbjct: 186 RALVNEKNKYLTIFESMNNPVLLVDDGGRIENMNFAAARLFLQDALPGSVYYGPEANLRF 245

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFEN 418
              A    E +  +    ++ +         + W+  +     ++  S    G +  F +
Sbjct: 246 ADLAGFDLEAVKLRGEAGDVLTCI------GERWY--SITAQEMLDVSRKFVGIVVTFHD 297

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGV 447
           +T       +   L + + + +  +S  +
Sbjct: 298 VTEARRAREQAEALARAKTDFLATMSHEI 326


>gi|78224191|ref|YP_385938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78195446|gb|ABB33213.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 807

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 168/395 (42%), Gaps = 32/395 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTE 470
            + +  ++T     E       +      + ++ G+ +   D   I   NP    L    
Sbjct: 186 IVMLIRHVT---RFELVLRESEERMRVMFESINAGIVLIDCDNNSIVDVNPTALRLHGGT 242

Query: 471 ENRLSPGTHIRNIAATCSR---YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
           +  L      R       R    ++E    D+   +++  + ER  +  ++  ++ +   
Sbjct: 243 KEELIGYPSERLFHGDNVRTDPEHDEGKAIDISKGMLSLCNGERLPVLESVNYVAINGRR 302

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y          + +FV+++  +  E  L    EA   A   K+ F+  +S+E+R+P+  I
Sbjct: 303 Y---------MLKSFVDLSKQMTLETELLAAKEAAEAASRAKSIFLASMSHEIRTPMNAI 353

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           IG+  LLK    G+L  +Q QY+  I+ S   LL L+NDIL+++ +++G + L       
Sbjct: 354 IGYAQLLKRE--GNLAPQQGQYLNVINNSGEHLLKLINDILEMSKIESGTVNLTPVPFNF 411

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
           ++LL++V+   A +  +  +R  V   G++   + AD  ++ Q+   ++ NA+ F+ +G+
Sbjct: 412 HNLLHDVESLFADRARQKKLRFDVRLQGEVPVVLDADEMKVRQVLINMIGNALKFTDEGT 471

Query: 707 T-VILKAARDNGD----------FIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGV 754
             V + ++ D+ D              V+++G  I  +    VF  F    + R +  G 
Sbjct: 472 IAVTVSSSTDSPDKERDTYGETAITVDVEDSGIGISAEEADQVFALFEQTESGRRRIGGT 531

Query: 755 GLGLSIVESFINLHGGHVS-ISSSDEGVTTINCRI 788
           GLG+ I   F  L GG +  +       +      
Sbjct: 532 GLGMPISRQFARLMGGDLFLVRGEPGIGSAFRFVF 566


>gi|314936382|ref|ZP_07843729.1| sensor protein SrrB [Staphylococcus hominis subsp. hominis C80]
 gi|313655001|gb|EFS18746.1| sensor protein SrrB [Staphylococcus hominis subsp. hominis C80]
          Length = 588

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 160/389 (41%), Gaps = 44/389 (11%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G   + F N++ ++ +     +T   ++    + + EGV        I LSN     +  
Sbjct: 230 GELSYTFNNMSYKIQEHIEALSTQKNIRDRLFNSMIEGVVGLNDKSEIILSNKMADQILP 289

Query: 469 TEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDS 524
           T +  +       I     +    +NE      +   I S+ D  +     G + ++ D 
Sbjct: 290 TIDKSIYSEIKNQINATFHSKGTEFNEYAINSKYYVFIMSYIDRIQQDGRSGIVIIIRDM 349

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             E+++                                   D++K  F+ +VS+ELR+P+
Sbjct: 350 TNEHNL-----------------------------------DQMKKDFIANVSHELRTPI 374

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           + + G+T+ +    +   N +  + +  +   +  L  LVN++L++A +DA  + +N   
Sbjct: 375 SLLQGYTESIVDGIVTEPN-EIKESLSIVLDETKRLNRLVNELLNVARMDAEGLTINKEI 433

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSS 703
             +  LL +++     +  +  + I ++ +         D  R+ Q+ + ++ NA  ++ 
Sbjct: 434 QPIMPLLRKIQLKYRQQAQDLELNIDLLPNINEDDLWNYDADRIDQVLTNLIDNATRYTH 493

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            G ++ + A +D+   I ++ + GS I  +    VF+RF        R   G GLGL I 
Sbjct: 494 PGDSITITANKDSQYQILNINDTGSGIAPEHLDHVFDRFYKVEASRTRGKQGTGLGLFIS 553

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  I  HGG +S+ S+    TT   ++P 
Sbjct: 554 KMIIQEHGGIISVESTVNKGTTFIIKLPK 582


>gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
 gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
          Length = 1389

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 4/243 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  RA   + E L + D  K  F  ++S+E R+PLT I G    L+T   G+  + + + 
Sbjct: 319 RGYRAQQRRAEELAELDRAKTIFFSNISHEFRTPLTLIAGPVQELRTRLAGAEPALREE- 377

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE I  +   L  LVN +LD + ++AG M+  Y  + L  L  E+     + + +  +R 
Sbjct: 378 VEVIHRNGLRLGRLVNALLDFSRLEAGRMQARYEPVDLAALTRELASVFRSAIEKAGLRF 437

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V           DR    ++   +LSNA+ F+  G+ + ++A    G  + +V + G  
Sbjct: 438 DVDCPPLPFPVYVDRGMWEKVVLNLLSNAVKFTFDGA-ITVRARALGGHAVVTVADTGVG 496

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I E     +F RF  V NA      G G+GL++V+  ++LH G ++  S++   TT   R
Sbjct: 497 IAEAEMPRLFERFHRVENARSRSSEGSGIGLALVKELVSLHAGEITALSAENLGTTFTIR 556

Query: 788 IPS 790
           +PS
Sbjct: 557 LPS 559



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 57/196 (29%), Gaps = 26/196 (13%)

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSC-------AFLRILSLDGIY 175
             ++L  A    R+      L+   +      ++G  +G+        A   +L+     
Sbjct: 688 DGLELVAALRADRRTASVPVLLLSARAGEEASVQGLEAGADDYLVKPFAAADLLARVRAN 747

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT---ETEGIV 232
            ELA    +  +  +       L DSL    +  D  G +L  N ++ +           
Sbjct: 748 VELARLRGQHARWRD------ALVDSLQEGFFVSDADGTVLETNATFTEILGYGPDGLPY 801

Query: 233 FQKAIGESRKLFKEEIKKRMISSSA---LEKNFCETVSTLE-HGNNKSYKIV--RVLNSF 286
                             R+   +A           +  +   G+    ++   RV    
Sbjct: 802 RPPLPWWPDPETDPHAYARVRREAARLVDGTIGQADLPLVHRDGHPVWLRVTYNRVEEPG 861

Query: 287 GEAGIAI----DVSKE 298
               +A+    D++ E
Sbjct: 862 SSRHVAVGTVRDITAE 877


>gi|170691461|ref|ZP_02882626.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170143666|gb|EDT11829.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 1490

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/522 (18%), Positives = 194/522 (37%), Gaps = 54/522 (10%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND---- 353
            E+ +  QL     ++  +   +   D        N ++          +    + D    
Sbjct: 573  ELELALQLNFQETMMKMVPYPLVAQDLQGRYIAVNGAYEAACGRGREAVLGRTTMDVQTW 632

Query: 354  -----ELLEFLR-SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                 ++LE +R    +  +    +   E      +            +GQ +       
Sbjct: 633  GEANSDVLEKMRLDLLQGGDMAQVELQFERGPGDLRHGLFWTSICRGNDGQPV------- 685

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF--GPDGRIKLSNPAFRS 465
                ++    ++T     E +     +   +    L   V       DG       A+  
Sbjct: 686  ---CSLGTMVDITDIRRAEMRARDTERRLFDVTRSLPAVVFQLRRAADG-------AYSF 735

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--ELLSD 523
             +     RL  G     I  TC  + + +   D    ++ +  +    L+  +  E    
Sbjct: 736  PYIGGAPRLLLGES--GIRQTCLEHADFARICDEDRPVVLAELERSARLETPVLVEFRLG 793

Query: 524  SVLEY-----SIIPLPNAQTMLTFVNVT-----DSVRAERALTEKNEALRKADEIKNSFV 573
               E+      ++P   A   + +         +  RAE  L    +    A   K+ F 
Sbjct: 794  REHEFKWTRAELVPRREADGGVVWSGYWVDASIEHARAE-ELARARDLAEAASRAKDDFF 852

Query: 574  QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
              +S+E+R+P+  ++G  ++L+ +    LNS Q + +  I  S+  LL +++D+LD + +
Sbjct: 853  AMMSHEIRTPMNGVLGLVEVLERT---PLNSDQGEMLGMIHESAGALLQILDDLLDYSKI 909

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFS 692
            +AG + +    I L ++++     +A + HE  ++++V     +  +   D  RL Q+  
Sbjct: 910  EAGRLTIEAEPIDLREMVDNAVGLLAGRAHEKGLKVRVDIASDVAATLRGDSVRLRQVLF 969

Query: 693  KILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             +L NA+ F+ +G   V + A    G+       V++ G  IP ++   +F  FV     
Sbjct: 970  NLLGNAIKFTPEGHVDVRVAAVAQTGELQTIEVIVEDTGIGIPAELQAKLFEPFVQAESS 1029

Query: 749  GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              RR  G GLGL+I    I L  G +++ S     T +  R+
Sbjct: 1030 TTRRFGGTGLGLTICRKLIQLMDGSLALDSEPGRGTRMTVRL 1071


>gi|75812473|ref|YP_320092.1| response regulator receiver hybrid histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75705229|gb|ABA24903.1| response regulator receiver hybrid histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 519

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 5/244 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R      E       A+ +K+ F+  +S+ELR+PL  I+G+  +L      S  +K++  
Sbjct: 117 RLAIEQAETRANAEAANRLKDEFLVTLSHELRTPLNAILGWAQILLKQTPNSSTTKRA-- 174

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  ++     +V DILD++ +  G   L  + + L  ++N V  S+   +    I +
Sbjct: 175 LETIVRNAKTQARIVEDILDISGIITGKFSLQVAPVDLVAIINTVIASVNPAIATKAIHL 234

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +       G  + D  RL QIF  +L NA+ F+ +   ++L+  + N D + +VK+ G  
Sbjct: 235 EAKLAPLDGQVLGDETRLQQIFGNLLLNAVKFTPEHGYILLQVKQVNIDAVITVKDTGIG 294

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINC 786
           I  +    VF+RF        R  RG+GLGL+I      LHGG +  +S  EG   T   
Sbjct: 295 INAEFLPFVFDRFSQADSSTTRSYRGLGLGLAIARQLTELHGGTIEATSLGEGYGATFTV 354

Query: 787 RIPS 790
           ++P 
Sbjct: 355 KLPL 358


>gi|17230375|ref|NP_486923.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17131977|dbj|BAB74582.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 1131

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 16/292 (5%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF--VNVTDSVRAERALTEKNEALRKADE 567
           E ++ Q  +   +  +L+ + + LPN   +      +VT+  +  + L  KN  L + + 
Sbjct: 358 EVQNGQERVWQFAKILLDNTDLKLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNR 417

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K+ F+  +S+EL++PLT ++G + LL   +LG LN +Q++Y   I  S   L+++VNDI
Sbjct: 418 LKDEFLACISHELKTPLTAVLGLSRLLVDQQLGELNERQARYAGLIHQSGRHLMSVVNDI 477

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT------------KMHENNIRIKVISDG 675
           LDL  ++ G M+L    + +  + +                       ++     +  + 
Sbjct: 478 LDLTRMETGQMELTPVPVSIRAVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSMEL 537

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L   VAD  RL Q+   +LSNA  F+     + L+ +   G   F+V + G  IPE   
Sbjct: 538 DLDQIVADELRLRQMLVHLLSNAFKFTEISGEIGLRVSHWEGWIAFTVWDTGIGIPEHQQ 597

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +F +F    +    Q  G GLGL +  +   LHGG VS  S +   +   
Sbjct: 598 HLIFQKFQQLENPLTRQFEGTGLGLVLTRALARLHGGDVSFLSREGKGSQFT 649


>gi|332142599|ref|YP_004428337.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552621|gb|AEA99339.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 891

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 17/252 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             +ALTE      KA   K+ F+ ++S+E+R+P+  IIG  +L +  +   L+     Y+
Sbjct: 375 LNKALTESKIKAEKATASKSIFLANMSHEIRTPMNGIIGLIELAQQQE---LSPTVRGYL 431

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +  + S  IL++++NDILD + ++AG +K+   +  L+ L + +   IA +  E N+ + 
Sbjct: 432 DKAAYSGQILISVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALRAKEKNLSVH 491

Query: 671 VISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------DFIF 721
              +  L    + D  R+ QI   I +NA+ F+ +G    ++ A D          +   
Sbjct: 492 FNVNPMLPPQVIGDPLRIAQIIMNIGNNAVKFTEQG---RIEIAFDGTLNEKGNRLNLTM 548

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            + ++G  + +     +F  F        R   G GLGL+IV     L  G +  SS+  
Sbjct: 549 RITDSGIGMSKAQLDKIFKPFTQADGSTNRKYGGTGLGLAIVSQLTELMNGRIDASSTMG 608

Query: 780 GVTTINCRIPSK 791
             +T    +P +
Sbjct: 609 KGSTFEVNLPLR 620


>gi|285016906|ref|YP_003374617.1| two-component system sensor/regulator hybrid protein [Xanthomonas
            albilineans GPE PC73]
 gi|283472124|emb|CBA14631.1| putative two-component system sensor/regulator hybrid protein
            [Xanthomonas albilineans]
          Length = 1142

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/404 (21%), Positives = 170/404 (42%), Gaps = 21/404 (5%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  RG  + + E + V      +     ++   T+D++S GV+V  P  R+   N
Sbjct: 604  RLVLTSLLRGSGMDLGEVVAVLDQAGQELRFNREILSTTLDNISAGVSVVDPSMRLVAWN 663

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              ++ L+   ++ L  G  + ++    +       G  +   I       R   +   E 
Sbjct: 664  RRYQRLFGYPDSMLYVGRSVADLIRYNAERGQLVAG-QVEEQISRRIAHMRAGTKHVFER 722

Query: 521  L--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-----------DE 567
            +    +V+E    PLP    + T+ ++TD  RAE+AL E NE L +             +
Sbjct: 723  IHHDGTVIEMRGQPLPGGGYITTYNDITDYKRAEQALLEANETLEQRVAVRSREAELAQQ 782

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K  F+  +S+++  PL     F   L+ +   S   +Q    E + AS      L++ +
Sbjct: 783  SKTRFLAAISHDVLQPLNAARLFASALRDAAHQS--EEQRHLAERVDASLRAAEELLDGL 840

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD++ +DAG ++     +  + LL E+    A       +R++V +  +     +DR+ L
Sbjct: 841  LDVSRLDAGGLRPTIEDVDASALLRELAAQYAPVAASRGLRLRVYA--RPCWVRSDRRLL 898

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
             ++    L+NA+ ++ +G  ++L            V + G  IP+   + +F  F     
Sbjct: 899  RRVLQNFLANALRYTRQG-RIVLGMRGRGTALELQVWDTGPGIPQHHLRQIFEEFQRYQQ 957

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +G+GLGLSI +    L    + + S     +  +  +P
Sbjct: 958  PFDWGEQGLGLGLSICQRISRLLDHELDVRSHVGSGSMFSITVP 1001



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 69/209 (33%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
            ++A  E  +L   E +  +++  A  +     ++      +    +  +L   G     
Sbjct: 561 ARRAFAEQAQLLGCEPQPNVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMDLGE 620

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++  +++ D +  L   NR +  L+    + L   
Sbjct: 621 VVAVLDQAGQELRFNREILSTTLDNISAGVSVVDPSMRLVAWNRRYQRLFGYPDSMLYVG 680

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
            S  +L+ +     +L      +     I +  ++   H       +G  + +     P 
Sbjct: 681 RSVADLIRYNAERGQLVAGQVEEQISRRI-AHMRAGTKHVFERIHHDGTVIEMRGQPLPG 739

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG I  + ++T     E       +   +
Sbjct: 740 GGYITTYNDITDYKRAEQALLEANETLEQ 768


>gi|239628563|ref|ZP_04671594.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518709|gb|EEQ58575.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 838

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 163/390 (41%), Gaps = 19/390 (4%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWK 468
           G   +    +  +      YN   ++    ID  +E   ++    R ++  +P   S+  
Sbjct: 299 GFIFFRLNQIADRKRDADVYNR-ERMLNLLIDRGNEVYMMYNRTKRCLEYVSPNLESVMG 357

Query: 469 TEENRLSPGTHI--RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                            A   +   +E   WD     + S         G L  +    L
Sbjct: 358 WSRQEAEQLFSEGGDGDADDIAGIKDELANWDRQGDFVGSIHRHLNRNTGDLRRIR---L 414

Query: 527 EYSIIPLPNAQTMLTF-VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           + + + L + +  +    ++T        L +   A   A+  K++F+ ++S+++R+P+ 
Sbjct: 415 QVNPVHLDSEEVWIANLSDMTKEWEQREDLEQALIAANSANIAKSNFLSNMSHDIRTPMN 474

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G  D+ K     +   K +  +E IS SS  LL+L++++LD++ +++G M L+ +  
Sbjct: 475 AILGMADIAKQ--YAANPEKVTSCMEKISYSSKHLLSLIDEVLDMSRIESGKMLLDNTAF 532

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            L+ +L  +       + E  +   +  +  +  S + D  RL +I   ILSNA+ ++ +
Sbjct: 533 SLSCMLEGIVSMFQAPIKEKKLTFHMEKNHIENDSLIGDEFRLSRILVNILSNAIKYTPE 592

Query: 705 GSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGL 756
              +    A    D      + F +K+ G  + E+  K++F  F           +G GL
Sbjct: 593 QGEISFSIAESQPDKEGYARYRFIIKDTGRGMTEEFLKTIFLPFTRMEEKDGNHTQGTGL 652

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G++I +S ++L GG + + S+    +T   
Sbjct: 653 GMAIAKSMLDLMGGSIHVESAPGKGSTFTV 682


>gi|228475987|ref|ZP_04060695.1| sensor protein ResE [Staphylococcus hominis SK119]
 gi|228269810|gb|EEK11290.1| sensor protein ResE [Staphylococcus hominis SK119]
          Length = 589

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 160/389 (41%), Gaps = 44/389 (11%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G   + F N++ ++ +     +T   ++    + + EGV        I LSN     +  
Sbjct: 231 GELSYTFNNMSYKIQEHIEALSTQKNIRDRLFNSMIEGVVGLNDKSEIILSNKMADQILP 290

Query: 469 TEENRL--SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDS 524
           T +  +       I     +    +NE      +   I S+ D  +     G + ++ D 
Sbjct: 291 TIDKSIYSEIKNQINATFHSKGTEFNEYAINSKYYVFIMSYIDRIQQDGRSGIVIIIRDM 350

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             E+++                                   D++K  F+ +VS+ELR+P+
Sbjct: 351 TNEHNL-----------------------------------DQMKKDFIANVSHELRTPI 375

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           + + G+T+ +    +   N +  + +  +   +  L  LVN++L++A +DA  + +N   
Sbjct: 376 SLLQGYTESIVDGIVTEPN-EIKESLSIVLDETKRLNRLVNELLNVARMDAEGLTINKEI 434

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSS 703
             +  LL +++     +  +  + I ++ +         D  R+ Q+ + ++ NA  ++ 
Sbjct: 435 QPIMPLLRKIQLKYRQQAQDLELNIDLLPNINEDDLWNYDADRIDQVLTNLIDNATRYTH 494

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIV 761
            G ++ + A +D+   I ++ + GS I  +    VF+RF        R   G GLGL I 
Sbjct: 495 PGDSITITANKDSQYQILNINDTGSGIAPEHLDHVFDRFYKVEASRTRGKQGTGLGLFIS 554

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  I  HGG +S+ S+    TT   ++P 
Sbjct: 555 KMIIQEHGGIISVESTVNKGTTFIIKLPK 583


>gi|159898664|ref|YP_001544911.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891703|gb|ABX04783.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 755

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/354 (23%), Positives = 156/354 (44%), Gaps = 25/354 (7%)

Query: 447 VAVFGPDGRIKLSN----PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + V    G ++L N     A+  L       +S       I       ++ S    L  A
Sbjct: 138 IIVIAILGGLQLFNLQFVGAYPRLGDLLPPTISTFIFSVLIVGFFFHRFSASLNDALSRA 197

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +    + E + ++  LE+L D         L +A             +    L     A 
Sbjct: 198 LQR--ESELQQIRDKLEILVDQ----RTAALQDA-LHAVEEREGRLEKTNIELAAAKTAA 250

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A+++K+ F+ ++S+ELR+PL  II FT  L   + G  + +Q +  E +  ++  LL 
Sbjct: 251 EEANQLKSRFLANMSHELRTPLNAIINFTAFL--DRYGEFSERQRELQERVLYNADHLLG 308

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+NDILDL+ ++AG M+L Y    L  ++  V  + +    +  + +++    +L + V 
Sbjct: 309 LINDILDLSKIEAGRMELMYEKTQLEPIITGVMATASGLTRDKGLELELDMPEELPTMVI 368

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM-------C 735
           D+ R+ Q+   +LSNA+ F+ +G   +  +  D      SV+++G  I  +         
Sbjct: 369 DKVRIRQVLLNLLSNAVKFTEQGQINVTISQPDPETVQISVQDSGIGIAPEHQQQIFEEF 428

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +      V N    Q +G GLGL I +  + +HGG++ + S+    +T    +P
Sbjct: 429 QQ-----VQNEVTHQYQGTGLGLPISKLLVEMHGGNMWLESTPGKGSTFFFSLP 477


>gi|229523745|ref|ZP_04413150.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae bv. albensis VL426]
 gi|229337326|gb|EEO02343.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae bv. albensis VL426]
          Length = 868

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/362 (24%), Positives = 152/362 (41%), Gaps = 15/362 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 214 EQQRWLTELLDAIPSMIFISDEKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 267

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 268 LALPDQHEAEYSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 325

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 326 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 382

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 383 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 442

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 443 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 501

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +    S+F  FV       RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 502 MTQTQIDSLFVPFVQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIKVS 561

Query: 788 IP 789
           +P
Sbjct: 562 LP 563



 Score = 37.6 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +        L D++  +++  D+ G+++  N +Y+K
Sbjct: 193 LSLSRLRGKLRSSEQVAKLSTEQQRWLTELLDAIPSMIFISDEKGEVVLTNAAYRK 248


>gi|164687392|ref|ZP_02211420.1| hypothetical protein CLOBAR_01033 [Clostridium bartlettii DSM 16795]
 gi|164603816|gb|EDQ97281.1| hypothetical protein CLOBAR_01033 [Clostridium bartlettii DSM 16795]
          Length = 1077

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 5/236 (2%)

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL---LKTSKLGSLNSKQSQYVEYISAS 616
            + + KA+  KN++  ++S+ELR+PL  I     L   L  ++ G    K  +Y++ ++ +
Sbjct: 832  DKIIKAERSKNNYFINLSHELRTPLNVISSVEQLISNLNRTEKGISKEKIDEYMKVMNKN 891

Query: 617  STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
               LLNL+N+I+D   ++ G  K+N     +  ++ E+  S+   +    I + + ++ +
Sbjct: 892  VKRLLNLINNIIDTTKIENGKYKINLEEENIVYIVEEIALSVRDAIESTGINLIIDTNTE 951

Query: 677  LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
                  DR  + +    +LSNA  F+  G T+ +           +V++ G  I E   K
Sbjct: 952  EKIIKCDRNEIERCIINLLSNASKFTPSGGTITVDIEDLGEKVKITVEDTGIGIEEKYHK 1011

Query: 737  SVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F+RF          + G GLGL+I +  I++H G + I S  +  T     +P+
Sbjct: 1012 YIFDRFNQIVDSSMETKGGSGLGLTITKHIIDMHNGEIYIESEVDKGTKFTIILPA 1067


>gi|125973802|ref|YP_001037712.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281417958|ref|ZP_06248978.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|125714027|gb|ABN52519.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281409360|gb|EFB39618.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 504

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 108/244 (44%), Gaps = 4/244 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     R+       L+  + ++  F+ +VS+ELR+P+T+I GF + +    +     K+
Sbjct: 255 EIGELARSFNNMAGELQNLENMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPP--EKE 312

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  +      L  L  D+LDLA ++AG + +N     +N+L+      +   + + +
Sbjct: 313 KDYLLIVRDEIRRLNRLTTDLLDLAKMEAGEITINPVNFNINELIRRCIIKLENFITQKD 372

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I ++   + +     AD   + ++   ++ NA+ F  +   + +  +      +  V++N
Sbjct: 373 IEVEANFEEEDMYVKADIDSIERVLINLMHNAVKFVQQNGKIKVSTSSYKNKVLVCVEDN 432

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    ++ RF  +       + G GLGL+IV + IN H   + + S     T  
Sbjct: 433 GIGIDRNEIDLIWERFYKSDKSRSKEKGGAGLGLAIVRNIINDHKQEIWVESEVGKGTKF 492

Query: 785 NCRI 788
              +
Sbjct: 493 YFTL 496


>gi|332707381|ref|ZP_08427431.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332353872|gb|EGJ33362.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1221

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 20/296 (6%)

Query: 514 LQGTLELLS---DSVLEYSIIPL-----PNAQTMLTFVNVTDSVRA-ERALTEKNEALRK 564
            +G LE  S        YS  P+     PN+Q  L     T   R   + L  KN  L +
Sbjct: 451 WEGGLETDSCEPKVAFNYSPSPISRSESPNSQLYLVLAQDTTEQRLFAQELAAKNADLVQ 510

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            + +K+ F+  +S+EL++P+T I+G + LLK   LG LN +QS+Y + I  S   L+ +V
Sbjct: 511 LNRLKDEFLACISHELKTPITAILGLSTLLKDQALGELNQRQSRYAQLIYQSGRKLMTVV 570

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN---------IRIKVISDG 675
           NDILDL  ++ G +KL    + +  + +       +++   +          +  +  + 
Sbjct: 571 NDILDLTRMETGQLKLTLEPVPIRTVCDRAYDQARSEIDSKHSEDNNRDYPTKFTLEIEA 630

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L   +AD  RL Q+ + + SNA+ F+     + LK     G   F+V + G  IP D  
Sbjct: 631 SLEMLIADELRLRQMLAHLFSNALKFTDGSGEIGLKVNWWQGWIAFTVWDTGIGIPADKQ 690

Query: 736 KSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F +F            G GLGL + +   +LHGG VS  S     +      P
Sbjct: 691 HLIFQKFQQLEKPLTRSFEGTGLGLVLTQHLAHLHGGDVSFISKAGLGSQFTLLFP 746


>gi|186471157|ref|YP_001862475.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia phymatum STM815]
 gi|184197466|gb|ACC75429.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia phymatum STM815]
          Length = 1361

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/516 (16%), Positives = 193/516 (37%), Gaps = 37/516 (7%)

Query: 296  SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            ++  +  ++     + L NL     +     D+N  ++ +     +++ I  +       
Sbjct: 722  AELKSKVEETGKINDDLQNLIAANDIGTIFVDRNICIKRYTPRATDVFSIIPS------- 774

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-----HVIVTS 406
                 +  RS   +  +L +    ++    + S    +      +G+           T 
Sbjct: 775  -----DIGRSLLDITHRLEYDKLADDAAEAFDSLRLIERELKSNDGRWYLARFVPYRTTE 829

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRS 465
            +   G +  F ++T +   E +     +      +   +  +  F  +G +   N     
Sbjct: 830  DRIDGAVLSFIDITGRRQAEDRLREGERRMRIVAEGTKDYAIITFDDEGLVTSWNAGAER 889

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ---------G 516
            ++   E  +  G     ++    R  N +      A +    ++ER  ++         G
Sbjct: 890  IFGYTEAEM-IGQSADMLSTEEDRASNIAQAEFAEARLNGRTEEERWHVRKDGTRFFASG 948

Query: 517  TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             L  L ++ +      +         V  T+       L    E   +    ++ F+  V
Sbjct: 949  VLSRLDEAGVS-GFAKIARDLGEFGHVATTERGSHTETLRAAAERDAQ--RRRDEFLAVV 1005

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+EL+ PL  I    +L+  +     +   S+  + I  +      +++D+LD++ V  G
Sbjct: 1006 SHELKHPLNLISASAELIARAPETRQSLNISRAADTIRRTVIGQAQIIDDLLDISRVRTG 1065

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             + +  + + + +++  V  ++     +  + + V          AD  R+ Q+   ++S
Sbjct: 1066 KLSIIRTAVDMREIVQRVCNAVQDDARQRGLTLNVTMAESPVIIHADLTRVEQVVWNLVS 1125

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVG 755
            NAM F+++GS  +     ++G+ +  V + G  I   +   +F  F  +     +R G+G
Sbjct: 1126 NAMKFTNRGSVDVSLRVNEHGEAVLRVSDTGKGIEPSLLPHIFEMFEQSRDPVTRRSGLG 1185

Query: 756  LGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            +GL++V   +NLHGG V   S      +T    +P+
Sbjct: 1186 IGLALVRELVNLHGGAVRAESEGVGRGSTFTVTLPT 1221


>gi|330445858|ref|ZP_08309510.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490049|dbj|GAA04007.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 669

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 24/262 (9%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             R L E+ + L +A +IK  F+ ++S+E+R+P+  ++GF   L+  KL   + +Q  Y+
Sbjct: 258 LNRKLREQADDLSEAIKIKAEFMANMSHEIRTPMNGVLGFVQCLEERKLDKESRRQIGYI 317

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                S+  LL ++N+ILD + +++G ++L+ +    N  ++        +     I + 
Sbjct: 318 ---KESAYSLLVIINEILDYSKLESGNVELHLTPFAFNPFVHSCITPFIHQAKIKKIHVS 374

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------------- 716
               D    SF+AD  RL QI   ++ NA+ F+  GS V L   R +             
Sbjct: 375 TEIGDDIASSFIADEGRLRQILINLVGNAVKFTHTGS-VTLSVERLSSPVQQCEELRKYN 433

Query: 717 ----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
                   F V + G  I E+    +F+ +         Q  G GLGLSI  S   L   
Sbjct: 434 DKHIQWLRFKVIDTGIGIAEEKLAFIFDSYRQADGSISRQFGGTGLGLSISNSLCKLMFA 493

Query: 771 HVSISSSDEGVTTINCRIPSKE 792
            + + S     TT    IP K+
Sbjct: 494 ELKVESCIGKGTTFWFDIPLKQ 515


>gi|308274436|emb|CBX31035.1| hypothetical protein N47_E45470 [uncultured Desulfobacterium sp.]
          Length = 501

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 151/373 (40%), Gaps = 20/373 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +        T        I+ L  G+ V    G + L NPAF  L   +    S   HI
Sbjct: 138 ERKRTLADLGTEKSRIRTIIESLPNGIVVTNSTGHVALMNPAFLKLLGLDFYPDSTDGHI 197

Query: 481 RNIAATCSRYYNESDGWDLFAAIIT-SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                    Y  +     L   I   S+DD             D  L   I P+   +  
Sbjct: 198 E-------HYVKDEGFCSLVMRISQCSYDDAGNIPPYEFSTSDDKYLMARIRPVVGDENE 250

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                ++          E   AL+  D +K+ FV  VS+ELRSPL+ I      +     
Sbjct: 251 CLGAVIS---------IEDITALKMLDRLKSEFVAKVSHELRSPLSTIHEQLASVLNDMA 301

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G  ++ + Q +      ++ L++L+ D+LDL+ ++AG++      + ++ LL  +   ++
Sbjct: 302 GEDSNGERQLLNRAKEKTSGLISLIGDLLDLSRIEAGMVCNELKPVCVSTLLKNIVDFLS 361

Query: 660 TKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           T+       IK+      L S  +D   L  IF  +++NA++++ +G  +I+ A  +  +
Sbjct: 362 TRTKGKQQSIKLNLPETTLPSVQSDPLALESIFGNLIANAINYTQEGGEIIVSAFAEEKN 421

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            +  VK+NG  I       +F++F    +   R   G GLGL IV+  +   GG + + S
Sbjct: 422 LVVEVKDNGFGIDPKYIDKIFDKFFRIKNEKTRFITGTGLGLPIVKGLLEDIGGSIIVKS 481

Query: 777 SDEGVTTINCRIP 789
           +    +      P
Sbjct: 482 TPGKGSVFTVAFP 494



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 20/44 (45%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
             +  + +    I+ +L   I + +   ++   N +F++L  +D
Sbjct: 144 ADLGTEKSRIRTIIESLPNGIVVTNSTGHVALMNPAFLKLLGLD 187


>gi|119387834|ref|YP_918868.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119378409|gb|ABL73172.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 901

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 144/381 (37%), Gaps = 3/381 (0%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           I ++  L+++  +  +  +   +  E           +    R++               
Sbjct: 514 IGLYVGLSLRGRVSAREASQALLFVEVFQRGQAQPVFWRGRARLEDLRRLAGRFLGAARA 573

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
                 H R           ++   D     I        +         +  L    + 
Sbjct: 574 EALFRDHARETGTALDSLTADARLVDRVERQIAGAIGTASARVMVESAAQEESLSLGDVL 633

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               +         +   A   L   NE L+  D++K+ F+  V++ELR+PLT+I   T+
Sbjct: 634 EIIDEASQVRTYARELEEATVELRAANEKLKSLDQLKDDFMSSVTHELRTPLTSIRALTE 693

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+  +       ++ +++  I + S  L  LVN +LDLA +++G+ + + + + +  L+ 
Sbjct: 694 LMLDTP-DIQPQEREEFLNIILSESERLSRLVNQVLDLAKIESGMAEWHNTDVDMKALIV 752

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILK 711
              +S A    E    +      ++   +AD  RL Q+   +LSNA  F  +G   V + 
Sbjct: 753 AALRSTAELFRERGAEVLADLPEQVPMVLADPDRLTQVLVNLLSNAAKFVPEGRGRVEVA 812

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGG 770
                 + + +V++NG  +  +   +VF++F      G R  G GLGL I    +   GG
Sbjct: 813 LRHRGDELVVTVRDNGPGVAPEDQAAVFDKFRQGGEAGNRPPGTGLGLPISRQIVVNLGG 872

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + S           +P +
Sbjct: 873 RMWLDSQPGQGACFAFSLPLR 893


>gi|188993672|ref|YP_001905682.1| autoinducer sensor histidine kinase / transmembrane transporter
            [Xanthomonas campestris pv. campestris str. B100]
 gi|167735432|emb|CAP53647.1| autoinducer sensor histidine kinase / transmembrane transporter
            [Xanthomonas campestris pv. campestris]
          Length = 1147

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 186/471 (39%), Gaps = 32/471 (6%)

Query: 336  VELWEIDLAFLATNPSNDELLEFLR--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             +L  +    +    ++   L+  +       P  +  + W +    +  +S        
Sbjct: 546  ADLQALAERVVGERHAHRAFLDQAQLLERELQPTAVADRAWVQFTERLLAASIGAA---- 601

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                 +  +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD
Sbjct: 602  -----SARLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPD 656

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R+   N  ++ L+   +  L  G  + ++    +      +G D+   I       R  
Sbjct: 657  MRLTAWNRRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAG 715

Query: 514  LQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
                 E       V+E     LP    + ++ ++TD  RAERAL + NE L +       
Sbjct: 716  SPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSR 775

Query: 566  -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                  + K  F+  +S+++  PL     F   L+ S     N +Q    E + AS    
Sbjct: 776  EAELAQQSKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAA 833

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              L++ +LD++ +DAG ++        + L++E+    A       +R++V +  +    
Sbjct: 834  EELLDGLLDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVAASRGLRLQVHA--RALWV 891

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +DR+ L ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F 
Sbjct: 892  RSDRRLLRRVMQNFLANALRYTRQG-RIVLGMRGRGAQVELQVWDTGPGIPEHHMRQIFE 950

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F           +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 951  EFRRYQQPFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGQGSMFSILLP 1001



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +  +L + E++   ++  A  +     ++      +    +  +L   G     
Sbjct: 561 AHRAFLDQAQLLERELQPTAVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 620

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 621 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 680

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 681 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 739

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 740 GGYVTSYNDITDYKRAERALLDANENLEQ 768


>gi|229118160|ref|ZP_04247519.1| hypothetical protein bcere0017_44290 [Bacillus cereus Rock1-3]
 gi|228665383|gb|EEL20866.1| hypothetical protein bcere0017_44290 [Bacillus cereus Rock1-3]
          Length = 485

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  LE+ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 209 ERIKEGNLEFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQTQYEENRKELISNISH 265

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 266 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRV 324

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + E  I + +          AD +++ ++ S ++ N+
Sbjct: 325 PFQFETVELNMFMQELIEEMQMDLSEEGIEVYLQLHPSPLYVTADCEKINRVISNLIHNS 384

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 385 VKYMDKEEKKIAVTVSSDNDKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 444

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +  HGG +   S     T+I   +
Sbjct: 445 LGLAIAKQIVEEHGGEIWAESEPREGTSIFFSL 477


>gi|254440930|ref|ZP_05054423.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198251008|gb|EDY75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 817

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/517 (19%), Positives = 216/517 (41%), Gaps = 25/517 (4%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE--LWEIDLAFLATNP 350
           +D+ +     D                 +F ++      +R +++  +  ++ A    + 
Sbjct: 56  LDMPQLRQEFDIFFSRITTFQQAP----VF-EDLRTDSASRKYLDSVIVFLEQAATLIDT 110

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           ++DEL+  L     L +Q++         S+   ++T  +      G    + + +    
Sbjct: 111 TDDELVAQLPELIVLTDQVSLVVRALANSSLELYAQTADEQRAEVAGTLTQLALATAALI 170

Query: 411 GTIWM----FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           G + +       L  +V   E + N  +      +    +GV V   DG+I   +PA   
Sbjct: 171 GVLALAIIYLNLLNARVYHREREKNQTMSRMQSVMGTSLDGVVVCDADGKILEFSPAAEG 230

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDS 524
           ++   +  +        I      + NE+    +     +      R  L+   +     
Sbjct: 231 IFGHSKAAVLDLNIASVIVPDHLLHANEAGMERMRIGGDMRVIGKGRVRLEAKHKDGHIF 290

Query: 525 VLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E +I      +    +    +++  V AE  L    +    ++++K  F+  +S+E+R
Sbjct: 291 PVELAIQNAKTDEGTIFISFLRDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIR 350

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  ++G  +LL+ ++   LN  Q +YV Y+  S  +LL+ V+D+LD+   DAG +   
Sbjct: 351 TPLNGLLGNMNLLRDTE---LNENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTR 407

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              + +++LL ++  + A+   +N   +       K+   ++D  RL  +   ++ NA+ 
Sbjct: 408 IEPVNISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVK 467

Query: 701 FSSKGST-VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVG 755
           F+ +G   V ++   +    + +  + + G  + ED+ K VF+ FV+   A+     G G
Sbjct: 468 FTRRGKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTG 527

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGLSI + F+N  GG + + S     +T   R+P  E
Sbjct: 528 LGLSIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHE 564


>gi|295704203|ref|YP_003597278.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294801862|gb|ADF38928.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 459

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 119/240 (49%), Gaps = 4/240 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +   +  + L K + ++  F+  VS+E++SPLT+I GF+  LK   +     K+ QY+  
Sbjct: 215 KNFNQMTKELNKIETMRQEFIASVSHEIQSPLTSIRGFSAALKDDIVS--EDKKIQYLTI 272

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   ST L  L +++L LA++D+    L      L++ +  V  ++  +  + NI I + 
Sbjct: 273 IEKESTRLSQLSSNLLKLASLDSEHQTLMLQQYRLDEQIRHVVMALEPQWTKKNIEIDL- 331

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D       AD+  L Q++  +++NA+ ++ +   V +   + N +    +K+NG  I E
Sbjct: 332 -DLSNVQIEADKDLLEQVWLNLVTNAIKYTPENGFVKISIHQKNEEIDVKIKDNGIGIAE 390

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  K +F  F         +G GLGL+I +  + LH G V + S  E  +  +  +P ++
Sbjct: 391 EDQKYIFESFYKVDKSRTLKGSGLGLAITKKIVRLHEGAVRVESKKEQGSIFSVTLPIQK 450


>gi|296123509|ref|YP_003631287.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015849|gb|ADG69088.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1015

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 105/649 (16%), Positives = 226/649 (34%), Gaps = 64/649 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           I  ELA   +  +        F+V   S+D  +   D  G I   N   K   +    V 
Sbjct: 204 IDQELAARIVAEQSARLTSENFRVTIHSVDDALVTTDAQGRITLMNEVAKSLIQVSDDVL 263

Query: 234 QKAIGESRKLFKEEIKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRVLNSF-- 286
            + +    ++ ++                 +K      + L   +     +    +    
Sbjct: 264 GQPVDRIFQIQQDSGTTANEHPVHQVLRTGQKLAATETNWLIRADGTRVAVDDRASPIRN 323

Query: 287 ------GEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFV 336
                 G   +  D+S+++     +    E    +  +  V +A+ ++   +   N +++
Sbjct: 324 SKGKLQGTVLVVRDISEKLKAAQAIRRRDERFRRVFDSSLVGMALCNKYGRIIDANETYL 383

Query: 337 E--------LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
           E        L+  DL++    P+                 L+   W+E            
Sbjct: 384 ETIGYSREGLYSADLSWGDITPTQFS-------------GLDTGAWEE--LRATGRCRPF 428

Query: 389 KDTWHLPNGQTLHVIVTS----NPRGGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHL 443
           +  +   NG  + V++ +    +     + ++  NL+     E +Y  L        +  
Sbjct: 429 EKEFIAQNGMRVPVLIAAVKLLDDEESEVAIYTVNLSQLRAAEQRYRMLT-------NAS 481

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            + V +  P       N  +        +       +R +         E  G       
Sbjct: 482 PQIVWIARPGEDNLYCNDRWYEYTGLTPDETRGMGWLRAVP-------TEHQGQVAREWS 534

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
             S   E    +  L         + +  +P   +    V +  ++    AL +  + L 
Sbjct: 535 TASRKPETCEFELPLRGRDGLSRWHLLRGVPQINSDGVVVEMIGTMTDIDALRQAQQELE 594

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            AD  K+ F+  +S+ELR+PLT I    +  + + L     + ++  E +S  +  ++ L
Sbjct: 595 LADRRKDFFLATLSHELRNPLTPISNALEAWRAADLSP--EELTEVREMLSRQTKQMVRL 652

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           ++D+LD++ +  G ++L  + + L + +    +     + +   ++      +     AD
Sbjct: 653 IDDLLDVSRISGGKIQLKPAILDLRECIQTSIEVAQPLIRQAGHQLTTDLPNEPVWIKAD 712

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R++QI + +L+NA  ++     + L+           V +NG+ IP  M + +F  F 
Sbjct: 713 ATRIVQIVANLLNNAAKYTDPQGRIHLQVVPFEHQVEIQVVDNGAGIPAHMLEQIFGMFE 772

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
                    + G+G+GL++V S   LHGG V   S      +     +P
Sbjct: 773 QVGSSLDRAQGGLGIGLTLVRSLAELHGGSVVAFSEGLGKGSRFTITLP 821



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 94/263 (35%), Gaps = 36/263 (13%)

Query: 117 NW--LKFHHYIKLSK-ATEKLRKEGQ--SFDLVAETQNDCAIKIEGRVSGSCAFLRILSL 171
           +W  +    +  L   A E+LR  G+   F+     QN   + +               L
Sbjct: 399 SWGDITPTQFSGLDTGAWEELRATGRCRPFEKEFIAQNGMRVPVLIAAV--------KLL 450

Query: 172 DGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT----- 226
           D   SE+A  T+   +L      +++L ++   +VW      D L+ N  + + T     
Sbjct: 451 DDEESEVAIYTVNLSQLRAAEQRYRMLTNASPQIVWIARPGEDNLYCNDRWYEYTGLTPD 510

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF 286
           ET G+ + +A+    +   +  ++   +S   E    E       G ++ + ++R +   
Sbjct: 511 ETRGMGWLRAV--PTEHQGQVAREWSTASRKPETCEFELPLRGRDGLSRWH-LLRGVPQI 567

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
              G+ +++   +T  D L    + L            +R   F       L  +     
Sbjct: 568 NSDGVVVEMIGTMTDIDALRQAQQELEL---------ADRRKDFF------LATLSHELR 612

Query: 347 ATNPSNDELLEFLRSANKLPEQL 369
                    LE  R+A+  PE+L
Sbjct: 613 NPLTPISNALEAWRAADLSPEEL 635



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 4/158 (2%)

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           +I T    G    + + L  ++  E       +    TI  + + +      GRI L N 
Sbjct: 191 LISTGVAIGAWRSIDQELAARIVAEQSARLTSENFRVTIHSVDDALVTTDAQGRITLMNE 250

Query: 462 AFRSLWKTEENRLSPG-THIRNIAATCSRYYNESDGWDLFA---AIITSFDDERKSLQGT 517
             +SL +  ++ L      I  I        NE     +      +  +  +      GT
Sbjct: 251 VAKSLIQVSDDVLGQPVDRIFQIQQDSGTTANEHPVHQVLRTGQKLAATETNWLIRADGT 310

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              + D              T+L   ++++ ++A +A+
Sbjct: 311 RVAVDDRASPIRNSKGKLQGTVLVVRDISEKLKAAQAI 348


>gi|229076179|ref|ZP_04209147.1| hypothetical protein bcere0024_43760 [Bacillus cereus Rock4-18]
 gi|229099150|ref|ZP_04230084.1| hypothetical protein bcere0020_43730 [Bacillus cereus Rock3-29]
 gi|229105298|ref|ZP_04235947.1| hypothetical protein bcere0019_44320 [Bacillus cereus Rock3-28]
 gi|228678224|gb|EEL32452.1| hypothetical protein bcere0019_44320 [Bacillus cereus Rock3-28]
 gi|228684378|gb|EEL38322.1| hypothetical protein bcere0020_43730 [Bacillus cereus Rock3-29]
 gi|228707042|gb|EEL59247.1| hypothetical protein bcere0024_43760 [Bacillus cereus Rock4-18]
          Length = 484

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  LE+ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 ERIKEGNLEFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + E  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSEEGIEVYLQLHPSPLYVTADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKIAVTVSSDNDKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +  HGG +   S     T+I   +
Sbjct: 444 LGLAIAKQIVEEHGGEIWAESEPREGTSIFFSL 476


>gi|222054924|ref|YP_002537286.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564213|gb|ACM20185.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 575

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 158/395 (40%), Gaps = 18/395 (4%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G  I +  +   +  L              +++L+EG+ +  P G     N A   +   
Sbjct: 186 GNVIGLVSSALEKNSLYAALGESEYRLKSVVENLTEGLILIDPAGEGLQWNRAALLMHGY 245

Query: 470 EE--NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS---DS 524
               + ++    +  +               L    I   + E K     +   +     
Sbjct: 246 SRSVDEVASCPKLDQVFQLLQVDGKPLPMEQLPIKRILRGE-EFKDYHLVVRRRNTDWQR 304

Query: 525 VLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
              +S + + + +      +LT  +VT   ++E         L++++     F    S++
Sbjct: 305 TFSFSGVLIRDCRGEPFIGVLTLHDVTSRKQSEDERERLIAELQRSNGELQQFAYVSSHD 364

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L+ P+  +  +  LL+    G L+ K   Y+ Y+  ++  + +L++D+L L+ V  G  K
Sbjct: 365 LQEPIRMVTSYAQLLQKRYQGKLDDKADSYISYMVEAAHRMSSLIDDLLALSRV--GRSK 422

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
              + + L  ++ +   ++   + E+   +     G L +   D  +LLQ+F  ++ NA+
Sbjct: 423 SPPAPVALEPVVQQALDNMRISIGESGAEVTY---GPLPTVPGDEIQLLQLFKNLIGNAV 479

Query: 700 DFSSKG--STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
            +  K     V + A R    ++F V +NG  I     + +F  F    +R    G G+G
Sbjct: 480 KYRKKDVPPRVHISAVRKGNQWVFGVHDNGIGIEPQYHERIFVIFQRLHYREDYPGTGIG 539

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LSI +  +  HGG + + S+    +T    +P+K+
Sbjct: 540 LSICQKIVENHGGRIWVESTLGEGSTFYFTLPAKD 574



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 11/153 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL--WEIDLAFLATNPSND 353
           S    + +       ++ NLT  + + D        NR+ + +  +   +  +A+ P  D
Sbjct: 200 SLYAALGESEYRLKSVVENLTEGLILIDPAGEGLQWNRAALLMHGYSRSVDEVASCPKLD 259

Query: 354 ELLEFLRSANK---LPEQLNWKTWKENIFSVYKSSETHKDT-WHLP---NGQTLHVIVTS 406
           ++ + L+   K   + +    +  +   F  Y      ++T W      +G  +      
Sbjct: 260 QVFQLLQVDGKPLPMEQLPIKRILRGEEFKDYHLVVRRRNTDWQRTFSFSGVLIR-DCRG 318

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
            P  G +    ++T +   E +   L+     +
Sbjct: 319 EPFIG-VLTLHDVTSRKQSEDERERLIAELQRS 350


>gi|91223629|ref|ZP_01258894.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01]
 gi|91191715|gb|EAS77979.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01]
          Length = 584

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 120/253 (47%), Gaps = 8/253 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +     +T+  + + AL    +   +++  K+ F+  +S+E+R+P+  +IG T LL + 
Sbjct: 183 VLYLSHYITELKKTKLALQAAVKKAEESNHAKSMFLATMSHEIRTPMNGVIGMTQLLIS- 241

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              + + K  +++  +  S   L+ ++N+ILD + ++ G + L+     +N LL  +  +
Sbjct: 242 --DNKDPKIREHLTTLLESGEHLMVIINEILDFSKLEQGKLDLSEEEFDINQLLIPIMNA 299

Query: 658 IATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKG-STVILKAAR 714
              + ++ +I++   +     + V   D  R+ QI   ++ NA+ F+S G    +LK   
Sbjct: 300 FKPQANDKSIQLVFDTKELANNLVLKGDIVRIRQIVFNLVGNAIKFTSDGMVKAVLKYDI 359

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHV 772
                 F V + G  IP    +S+FN F     R      G GLGLSIV+      GG+V
Sbjct: 360 KTEKLSFQVSDTGIGIPTARLESIFNPFEQAEIRTMHDFGGTGLGLSIVKKLCLAMGGNV 419

Query: 773 SISSSDEGVTTIN 785
           +++S     +   
Sbjct: 420 TVTSELGIGSCFT 432


>gi|77359512|ref|YP_339087.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874423|emb|CAI85644.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 924

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 124/248 (50%), Gaps = 15/248 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL ++    +KA E K +F+  +S+E+R+P+  +IG  DLL+ +   +L+  Q +    I
Sbjct: 263 ALEKETLNAQKASEAKTTFLATMSHEIRTPMNGVIGTIDLLRQT---NLDGSQYRLSTII 319

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL++++DILD + ++AG + ++     + D + EV + +++     ++ + +  
Sbjct: 320 RESAFSLLSILDDILDFSKIEAGKLNIDPIPFSVTDTIEEVVRVLSSIAKHRDLDLNLSI 379

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFS-----SKGST-VILKAARDNGD---FIFSV 723
              +    + D  R+ QI   + SNA+ F+      KG   + ++ A +  +     F V
Sbjct: 380 APDIPINLIGDNTRVRQILYNLCSNAIKFTSTSESHKGQVNISVEVAHNTAEHFTLRFCV 439

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +NG  + +   + +FN F+        +  G GLGLSI +S   L  G +S++S+    
Sbjct: 440 TDNGKGMSQAQLREIFNPFIQAESSITREYGGTGLGLSICKSLTELMLGTISVNSNIGIG 499

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 500 SEFTVELP 507


>gi|256004534|ref|ZP_05429513.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255991539|gb|EEU01642.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316940005|gb|ADU74039.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 504

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 108/244 (44%), Gaps = 4/244 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     R+       L+  + ++  F+ +VS+ELR+P+T+I GF + +    +     K+
Sbjct: 255 EIGELARSFNNMAGELQNLENMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPP--EKE 312

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  +      L  L  D+LDLA ++AG + +N     +N+L+      +   + + +
Sbjct: 313 KDYLLIVRDEIRRLNRLTTDLLDLAKMEAGEITINPVNFNINELIRRCIIKLENFITQKD 372

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I ++   + +     AD   + ++   ++ NA+ F  +   + +  +      +  V++N
Sbjct: 373 IEVEANFEEEDMYVKADIDSIERVLINLMHNAVKFVQQNGKIKVSTSSYKNKVLVCVEDN 432

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  +    ++ RF  +       + G GLGL+IV + IN H   + + S     T  
Sbjct: 433 GIGIDRNEIDLIWERFYKSDKSRSKEKGGAGLGLAIVRNIINDHKQEIWVESEVGKGTKF 492

Query: 785 NCRI 788
              +
Sbjct: 493 YFTL 496


>gi|229132846|ref|ZP_04261691.1| hypothetical protein bcere0014_17750 [Bacillus cereus BDRD-ST196]
 gi|228650673|gb|EEL06663.1| hypothetical protein bcere0014_17750 [Bacillus cereus BDRD-ST196]
          Length = 438

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 127/244 (52%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L    + + KA+++KN F+  +S+E+R+PLT I G+++ LK +     + + 
Sbjct: 200 ELGELAHSLNYMADKIEKAEQLKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTDEEV 258

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  
Sbjct: 259 KVGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKQ 318

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +  +++ +    V DR RL Q+F  I+ NA+ +S++ STV ++A +  G  +  V + 
Sbjct: 319 IHL--VANLERVELVGDRNRLKQVFLNIIHNAIKYSNEKSTVYIEATKSEGQAVIKVTDQ 376

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G G+GL+IV+  + LHGG +SI+S +   TTI  
Sbjct: 377 GIGIAKEHLPFIEQSFYQINN--HIEGAGIGLAIVKKMVELHGGTLSITSRERVGTTILI 434

Query: 787 RIPS 790
           ++P 
Sbjct: 435 KLPL 438


>gi|254440106|ref|ZP_05053600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198255552|gb|EDY79866.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 803

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/517 (19%), Positives = 216/517 (41%), Gaps = 25/517 (4%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE--LWEIDLAFLATNP 350
           +D+ +     D                 +F ++      +R +++  +  ++ A    + 
Sbjct: 43  LDMPQLRQEFDIFFSRITTFQQAP----VF-EDLRTDSASRKYLDSVIVFLEQAATLIDT 97

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           ++DEL+  L     L +Q++         S+   ++T  +      G    + + +    
Sbjct: 98  TDDELVAQLPELIVLTDQVSLVVRALANSSLELYAQTADEQRAEVAGTLTQLALATAALI 157

Query: 411 GTIWM----FENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           G + +       L  +V   E + N  +      +    +GV V   DG+I   +PA   
Sbjct: 158 GVLALAIIYLNLLNARVYHREREKNQTMSRMQSVMGTSLDGVVVCDADGKILEFSPAAEG 217

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL-FAAIITSFDDERKSLQGTLELLSDS 524
           ++   +  +        I      + NE+    +     +      R  L+   +     
Sbjct: 218 IFGHSKAAVLDLNIASVIVPDHLLHANEAGMERMRIGGDMRVIGKGRVRLEAKHKDGHIF 277

Query: 525 VLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +E +I      +    +    +++  V AE  L    +    ++++K  F+  +S+E+R
Sbjct: 278 PVELAIQNAKTDEGTIFISFLRDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIR 337

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  ++G  +LL+ ++   LN  Q +YV Y+  S  +LL+ V+D+LD+   DAG +   
Sbjct: 338 TPLNGLLGNMNLLRDTE---LNENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTR 394

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMD 700
              + +++LL ++  + A+   +N   +       K+   ++D  RL  +   ++ NA+ 
Sbjct: 395 IEPVNISELLQDIVDNQASTAFQNETSLVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVK 454

Query: 701 FSSKGST-VILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVG 755
           F+ +G   V ++   +    + +  + + G  + ED+ K VF+ FV+   A+     G G
Sbjct: 455 FTRRGKVSVTIENVGEGDAAELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTG 514

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGLSI + F+N  GG + + S     +T   R+P  E
Sbjct: 515 LGLSIAKRFVNALGGEIGVESIVGEGSTFWVRLPVHE 551


>gi|196229923|ref|ZP_03128787.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196226249|gb|EDY20755.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1947

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 133/330 (40%), Gaps = 24/330 (7%)

Query: 478  THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
              I  +  T                +       +K LQ T E L     + +       Q
Sbjct: 1189 QSIGVVLNTIEATMRTEGLLQQSQQLTAELQSGQKELQQTNEELEQKARQLA------EQ 1242

Query: 538  TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                     +  +A  AL EK   L    + K+ F+ ++S+ELR+PL +I+     L  +
Sbjct: 1243 NAEVERKNKEIEQARSALEEKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLAEN 1302

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
              G+L+ KQ  +   I ++   LLNL+NDILDL+ +++G + +    I    L   V+++
Sbjct: 1303 GAGNLSEKQVDFARNIHSAGADLLNLINDILDLSKIESGTVAVEAEDITFASLRESVERN 1362

Query: 658  IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--- 713
                    N+   V  D  L   F  D +RL QI   +LSNA  F+S+G  V +KA    
Sbjct: 1363 FRHIADNKNLPFYVDFDPALPRQFSTDSKRLQQIIKNLLSNAFKFTSQG-QVSMKAEAAT 1421

Query: 714  -----------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
                       R       S+++ G  I  +  + +F  F         +  G GLGL+I
Sbjct: 1422 EGWTVDHPVLKRAPNVIALSIRDTGIGIAPEKQRLIFEAFQQADAGTSRKYGGTGLGLAI 1481

Query: 761  VESFINLHGGHVSISSSDEGVTTINCRIPS 790
                  L GG + ++S     +T    +P 
Sbjct: 1482 SRELATLLGGEIRLNSVPGEGSTFTLYLPL 1511


>gi|325924825|ref|ZP_08186260.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|325544755|gb|EGD16103.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 1057

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A+  L   +  L  A   K+ F+ ++S+ELR+PL + +    LL  +K G+L+++Q +Y 
Sbjct: 348 AQNQLVRNSNELSTASRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTLSAEQVKYA 407

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRI 669
           + I +S+  LL L+NDILDL+ ++AG ++L   T+V + +L  ++++      +      
Sbjct: 408 QAILSSNNDLLALINDILDLSKIEAGHVELADETVVTDSVLQRLRETFEPLARQKGLALE 467

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
              + G     V D QRL QI   +L+NA+ F+  G   +   A   G   F+V + G  
Sbjct: 468 IAAAAGAPAQLVVDNQRLQQILKNLLANAIKFTEHGKVSLTVQAHAPGRVHFAVTDTGIG 527

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +  + +F  F       +RR  G GLGLSI        GG +S+ S     +     
Sbjct: 528 IAREQSEVIFEAFRQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLE 587

Query: 788 IPS 790
           +P+
Sbjct: 588 LPT 590


>gi|163813932|ref|ZP_02205326.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759]
 gi|158450802|gb|EDP27797.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759]
          Length = 726

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 121/260 (46%), Gaps = 14/260 (5%)

Query: 541 TFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +       R E+     + +  E  R A+E K  F+ ++S+++R+P+  IIGF  LLK 
Sbjct: 312 VYWQFAIRHRKEQSYMAEIEKTAENARLANEAKTRFLFNMSHDIRTPMNAIIGFAQLLKD 371

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                   K ++Y   ISAS ++LL+++N +L++A +++G  +LN     L +L   +K 
Sbjct: 372 HADDK--DKVNEYTSKISASGSVLLSIINQVLEMARIESGEAELNEEVGNLRELTESIKA 429

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-- 714
               ++    +    +          D  ++ +I   I+ N++ ++  G  + ++  +  
Sbjct: 430 VFEPEISRKKLSCDYLVKVTEEFVSYDETKVREILLNIIGNSVKYTPDGGNISVRVEQIS 489

Query: 715 --DNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
             D G   + F+V + G  + E+    +F  F       + R  G GLGL IV+S +++ 
Sbjct: 490 KGDQGSASYRFTVADTGIGMSEEYLPHIFEEFTRERTSTETRVEGTGLGLPIVKSLVDMM 549

Query: 769 GGHVSISSSDEGVTTINCRI 788
           GG + + S     TT    +
Sbjct: 550 GGSIDVQSKVGVGTTTTIVL 569


>gi|159901418|ref|YP_001547665.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894457|gb|ABX07537.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 557

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/310 (24%), Positives = 133/310 (42%), Gaps = 16/310 (5%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQ-------TMLTFVNVTD 547
           G DL   +     DE ++L      +  S+ E+  ++ L NA+             ++  
Sbjct: 227 GGDLERTVQVRGGDELQTLASNFNSMVRSLREHRDMLELRNAELAESLYVQQQLTEDIIR 286

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +AE        A   A + K+ FV  +S+ELR+PL  I+G+T LL             
Sbjct: 287 RKQAEEIALRAQAAAEAASQAKSMFVATMSHELRTPLNAILGYTQLLHLGAKARGQEDVL 346

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +E I  +   LL LV+++LD + ++ G M L+   + L  L++EV   +         
Sbjct: 347 PQLERIRLAGKHLLTLVSNVLDFSKIEHGKMNLDLGDVQLASLVDEVMGIVQPLAEARFD 406

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSV 723
           ++            +D  ++ QI   +LSNA+ F+  G TV L+   +        IF+V
Sbjct: 407 QLTTEF-ASTSLIYSDGGKIRQILFNLLSNAIKFTEAG-TVTLRVWDEQRAGEPWLIFAV 464

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  +  D  + +F  FV       R   G GLGL++ +    + GG +S+ S     
Sbjct: 465 SDTGIGMAPDQLRRLFKPFVQADESTTRTYGGTGLGLALSQQLAAMLGGSISVESCPNVG 524

Query: 782 TTINCRIPSK 791
           +T   +IP +
Sbjct: 525 STFTLQIPVQ 534


>gi|78048721|ref|YP_364896.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037151|emb|CAJ24896.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1194

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 12/248 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   + ++ Q  Y 
Sbjct: 806  AWQLAVHKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---TQDATQRSYT 862

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  +   LL LVND LDLA +++G ++L++    +  L+ EV+  +A    E  +R  
Sbjct: 863  ESIRRAGAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS 922

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
            +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 923  LEI-GLLGDITASGDSTRIRQILLNLLNNAIKFTERG-VVALKLTTLGSYQGLRFEVADT 980

Query: 727  GSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F RF          +  G GLGL+I +      GGH+ + S     T 
Sbjct: 981  GPGINAEQKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTR 1040

Query: 784  INCRIPSK 791
                +P +
Sbjct: 1041 FVVDLPLR 1048


>gi|87301192|ref|ZP_01084033.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. WH 5701]
 gi|87284160|gb|EAQ76113.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. WH 5701]
          Length = 667

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 162/426 (38%), Gaps = 60/426 (14%)

Query: 406 SNPRGGTIWM----FENLTVQVD-----LETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           S P GG +      F ++  Q++        +       Q   I  +++G A+   +GRI
Sbjct: 236 SLPVGGELGELLNGFNDMASQLEDYDAANIEELTAAQVKQQSLIATMADGAALLDGEGRI 295

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAIITSFDDER 511
            L NP  R L++ E   L        +    +            G    A +  SF +  
Sbjct: 296 VLVNPTARRLFRWEGRNLEGNELGSELPDVLTMELQGPLDSLVSGEKDSADVRCSFGEPP 355

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           ++L+  L+ + D+            +++         +  E  L          +  ++ 
Sbjct: 356 RTLRIVLQTVKDAA----------GESLKGIAMTVQDLTREVEL----------NAAQSR 395

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ +VS+ELR+PL NI  + + L   +      +  +++   +A +  L  LVND+LDL+
Sbjct: 396 FISNVSHELRTPLFNIKSYVETLHDLRDQLSEEETQEFLAIANAETDRLTRLVNDVLDLS 455

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +++         + +   + +  ++      E  +++++  D  L     +   LLQ+F
Sbjct: 456 RLESDR-TWTLEPMEVRPAMEQTLRNYRLNAEEKGVQLELEVDAHLPGVRGNWDLLLQVF 514

Query: 692 SKILSNAMDFSSKGSTVILKAARDNG------------------------DFIFSVKNNG 727
             ++ N + F+  G  V+L+A                                  + ++G
Sbjct: 515 DNLVGNGLKFTPAGGRVMLRAYPWPDSCHLDPANLPALDAPSCELSSPLPRLRVEIADSG 574

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           + I  +    +F RF    +      G GLGLSIV   +  HG  + ++S     TT   
Sbjct: 575 TGISREDQLRIFERFYRVENAVHTEVGTGLGLSIVRGILEKHGTAIKMASEPGVGTTFWF 634

Query: 787 RIPSKE 792
            +P ++
Sbjct: 635 DLPLEQ 640



 Score = 45.3 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 55/185 (29%), Gaps = 17/185 (9%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            +    +F   +S    G     +++   N         D +    +         ++  
Sbjct: 224 RAIAGGDFEARISLPVGGE--LGELLNGFNDMASQLEDYDAANIEELTAAQVKQQSLIAT 281

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +    A+ D    +   N +   L+  +   L  N    EL + L    + P        
Sbjct: 282 MADGAALLDGEGRIVLVNPTARRLFRWEGRNLEGNELGSELPDVLTMELQGPLDSLVSGE 341

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETK 428
           K++        E           +TL +++ +          G     ++LT +V+L   
Sbjct: 342 KDSADVRCSFGEPP---------RTLRIVLQTVKDAAGESLKGIAMTVQDLTREVELNAA 392

Query: 429 YNTLV 433
            +  +
Sbjct: 393 QSRFI 397


>gi|329904038|ref|ZP_08273656.1| two-component hybrid sensor and regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548159|gb|EGF32872.1| two-component hybrid sensor and regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 697

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 112/241 (46%), Gaps = 10/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT   +    A++ K SF+  VS+E+R+PL  IIG TDLL  ++   L+ +Q   +  + 
Sbjct: 176 LTGALQREEAANQAKRSFISSVSHEMRTPLNAIIGMTDLLHGTR---LDREQEAMLGSLD 232

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++ ++L LV D+LD + ++AG + +  +    + L   +      +     +++++  D
Sbjct: 233 TAAQLMLALVEDVLDFSKIEAGKLVIEDTAFDPHRLAGGIIDLFRYQAAARGLQLRLDID 292

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNGD---FIFSVKNNGSS 729
             L      D   L Q+   ++SNA+ F+ +G  V  +    D G+     F +++ G  
Sbjct: 293 PALPHGLCGDPHHLRQVLVNLMSNAIKFTEQGHVVLRIALLADAGERVRVRFDIEDTGIG 352

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I       +F+ F        RR  G GLG +I    + L GG + + SS    +T    
Sbjct: 353 IAPAAQARIFDSFTQADASTTRRYGGTGLGTTISRQLVELMGGQLGLRSSVGAGSTFWFE 412

Query: 788 I 788
           +
Sbjct: 413 L 413


>gi|146343656|ref|YP_001208704.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146196462|emb|CAL80489.1| Sensor histidine kinase with a response regulator receiver domain
           (two-component signal transduction system)
           [Bradyrhizobium sp. ORS278]
          Length = 1124

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 113/255 (44%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R +  L    E    A+  K+ +V  +S+ELRSPL  I G+  LL+ 
Sbjct: 641 QTQLLIQEIDAHKRTDAELQRAKEVAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               SL  K    V  +  S+  L  L++ ILD++ ++AG + L+   + L++ L+++  
Sbjct: 701 D--TSLAPKPRDQVRVVRRSADHLSGLIDGILDISKIEAGRLYLSRDEVRLSEFLDQLVG 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     +         L   V AD +RL QI   +LSNA+ F+ +GS V       
Sbjct: 759 MFRLQAAAKGVDFVFKRPAVLPLVVYADEKRLRQILINLLSNAIKFTQEGS-VQFVVHYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
           +    F V + G  I  D  + +F  F   A    +   G GLGL+I      + GG + 
Sbjct: 818 SPVAEFEVIDTGPGIQPDDLERIFAPFERGALGAAQPQTGTGLGLTISRLLAGVMGGDIK 877

Query: 774 ISSSDEGVTTINCRI 788
           + S     +T   +I
Sbjct: 878 VESKVGTGSTFKVKI 892


>gi|148979130|ref|ZP_01815338.1| Probable sensor/response regulator hybrid [Vibrionales bacterium
           SWAT-3]
 gi|145961996|gb|EDK27285.1| Probable sensor/response regulator hybrid [Vibrionales bacterium
           SWAT-3]
          Length = 572

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 117/236 (49%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +++     FV  +++ELR+PL  ++G  +L+  ++   LNS Q + V  +S S  
Sbjct: 195 RKRAEESERATRDFVAMINHELRTPLNGLLGSAELISDTE---LNSSQREIVNNLSQSGE 251

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  ++ND+LD + ++AG+++L      L+DL N ++     +  E  +   +     + 
Sbjct: 252 FLRTIINDLLDYSKINAGMLELIPKKFSLHDLRNTIESIFTNRAIEKQLDFNISVASDVP 311

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             F  D +R+ Q+F  ++ NA+ F+ +G  V +     +  F+FSV++ G  I E   K+
Sbjct: 312 SHFKGDLERITQLFVNLIGNAIKFTEEGH-VNVDIEWSDQHFVFSVEDTGVGIAESAYKT 370

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F    +   R   G GLGL+I    + L  G + ++S     TT    +P +
Sbjct: 371 LFEPFTQADNSSSRNYEGTGLGLAICRKLVGLMDGDIGVTSIVGSGTTFTISVPLQ 426


>gi|332712429|ref|ZP_08432355.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332348724|gb|EGJ28338.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1156

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 26/260 (10%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L+  D++KN F+ + S+ELR+PL  +I   + L     G L SK +  +  I+
Sbjct: 445 LEAKNTELQHLDQLKNEFLANTSHELRTPLNGMISIAESLMDGVAGQLPSKANANLAIIA 504

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L NLVND+LD + +    ++L    + L ++ N +     + + +  +++     
Sbjct: 505 SSGKRLGNLVNDLLDFSKLKHKHLELQIKPVSLREIANLILGHSQSLIGKKPLQLINSIA 564

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGS 728
             +    AD  RL QI   ++ NA+ F+  G  V + A +      +    + +V + G 
Sbjct: 565 ADMPLVDADENRLQQIIYNLIENAIKFTESG-KVEVSAEQLPVSNDELPMLVITVSDTGI 623

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI------------ 774
            IP D    +F+ F  V  +   +  G GLGL++    + LHGG + +            
Sbjct: 624 GIPADKLNRIFDSFESVDCSRTKEYGGRGLGLAVTRQLVELHGGKIHVRSLRLGEAQCCL 683

Query: 775 -----SSSDEGVTTINCRIP 789
                 S ++  +     +P
Sbjct: 684 GGSPKRSQNKSGSQFTFTLP 703


>gi|303246551|ref|ZP_07332830.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492261|gb|EFL52136.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 560

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/530 (18%), Positives = 192/530 (36%), Gaps = 100/530 (18%)

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
           F NR+F EL+ + L  +A                   E+ + +  ++   +V ++     
Sbjct: 49  FANRAFCELFGLTLEAVAGQTDFTLF-----------EKESAERHRKADLTVMRTGRFGA 97

Query: 390 DTWH-LPNGQTLHVIVTSNP----RGGTIWMF---ENLTVQVDLE--------------- 426
             +  +  G+++ + V   P     GG   +F    N+T    LE               
Sbjct: 98  FEYEVVGGGRSVWLEVFKTPVRDASGGIQGIFCSARNITTHKRLEVASRNARLELEKDAA 157

Query: 427 ------TKYNTLVKVQGE------------------TIDHLSEGVAVFGPDGRIKLSNPA 462
                  + N  ++ Q                     +++   G+AV   D  ++ +NP 
Sbjct: 158 TRAEDLRRVNEELRRQAAERGKAEKALEESLRAVNLILENSPIGIAVV-ADRIVQRANPT 216

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ--GTLEL 520
           F  L+      ++          + + +Y + + ++ F           + +     +  
Sbjct: 217 FHELFAMPPGTVA--------GRSTADFYPDREAYEAFGRDFYPVLGRGRRVDTVRPMRR 268

Query: 521 LSDSVLEYSII------PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
              +     II        P A ++    +VT+   AE A          A+ +K  F  
Sbjct: 269 ADGTEFWCRIIGQVLFPDRPQAGSIWLMEDVTERRLAEEA-------TLAAERLKREFAD 321

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+PL  I+G  +LL  ++   L  +Q   V  +  S+  L  L+  ILD + +D
Sbjct: 322 NMSHEVRTPLNGILGMAELLLATE---LTDEQRGLVATLKESAGNLTELLESILDFSRLD 378

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSK 693
           A       +   +N+++     S  +   +  + +    D +     V D   L ++ + 
Sbjct: 379 ADSEATRNTPFNINNIIQGAVNSFGSSALQKGLSLTWRIDPETPDLVVGDGAGLRRVLAA 438

Query: 694 ILSNAMDFSSKGST-VILKAARDNGDFI-----------FSVKNNGSSIPEDMCKSVFNR 741
           +LSNA+ F+ +G   V +    D  + +           F+V++ G  +P D  ++VF  
Sbjct: 439 LLSNAIKFTVQGGVEVAVSVGADCREAVPAATNGVVMVSFAVRDTGIGLPVDQLETVFEP 498

Query: 742 FVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F            G GLGL+I        GG +++ S     +      P
Sbjct: 499 FRQADGSMTRHYGGAGLGLAIARKIATSMGGDLTVESRPGSGSVFCFTAP 548



 Score = 73.4 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 105/322 (32%), Gaps = 76/322 (23%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE-SRKLFKE 246
           L    +    L D+   L +++D +    +AN ++    E  G+  +   G+    LF++
Sbjct: 20  LFGDPAFVGALLDASPDLFFYKDASFLYRFANRAF---CELFGLTLEAVAGQTDFTLFEK 76

Query: 247 EIKKRMISSS----ALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGI------AIDVS 296
           E  +R   +        +        +  G +   ++ +        GI      A +++
Sbjct: 77  ESAERHRKADLTVMRTGRFGAFEYEVVGGGRSVWLEVFKTPVRDASGGIQGIFCSARNIT 136

Query: 297 -------------------------------------------KEITVNDQLTHTYEILH 313
                                                       E  + + L     IL 
Sbjct: 137 THKRLEVASRNARLELEKDAATRAEDLRRVNEELRRQAAERGKAEKALEESLRAVNLILE 196

Query: 314 NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
           N  + IA+   +R +Q  N +F EL+ +    +A   +          A+  P++  ++ 
Sbjct: 197 NSPIGIAVV-ADRIVQRANPTFHELFAMPPGTVAGRST----------ADFYPDREAYEA 245

Query: 374 WKENIFSVYKSSETHKDTW--HLPNGQTLH------VIVTSNPRGGTIWMFENLTVQVDL 425
           +  + + V                +G          V+    P+ G+IW+ E++T +   
Sbjct: 246 FGRDFYPVLGRGRRVDTVRPMRRADGTEFWCRIIGQVLFPDRPQAGSIWLMEDVTERRLA 305

Query: 426 ETKYNTLVKVQGETIDHLSEGV 447
           E       +++ E  D++S  V
Sbjct: 306 EEATLAAERLKREFADNMSHEV 327



 Score = 37.6 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 11/150 (7%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
           G  +D   +           + +N AF  L+      ++  T         +  + ++D 
Sbjct: 28  GALLDASPDLFFYKDASFLYRFANRAFCELFGLTLEAVAGQTDFTLFEKESAERHRKADL 87

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRA 551
             +      +F+ E      ++       LE    P+ +A         +  N+T   R 
Sbjct: 88  TVMRTGRFGAFEYEVVGGGRSV------WLEVFKTPVRDASGGIQGIFCSARNITTHKRL 141

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELR 581
           E A       L K    +   ++ V+ ELR
Sbjct: 142 EVASRNARLELEKDAATRAEDLRRVNEELR 171


>gi|300869576|ref|ZP_07114157.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
 gi|300332444|emb|CBN59357.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
          Length = 947

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/575 (17%), Positives = 217/575 (37%), Gaps = 43/575 (7%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQ-AGDILWANISYKKNTETEGI 231
            I  ++ ++      ++     F+ + +++D + W  D      L+ + ++++      +
Sbjct: 360 AIARDITDSKQVQDVITEERERFRQMAETIDQVFWMTDPQKNQFLYVSPAFEQIWGITCL 419

Query: 232 VFQKAIGESRKLFKEEIKKRM---ISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSF 286
              +      +    E + R    + +    +   E       G+ +    +   + NS 
Sbjct: 420 EVYENPQLFFEFIHPEDRDRAIGAVETQIQGEYDREYRIIRRDGSVRWIHDRAFPIRNSL 479

Query: 287 GEA----GIAIDVSKE----ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
           GE     G+A D++      + + ++            V IA    +  +   N+ + ++
Sbjct: 480 GEVYRIVGVADDITDRHYAKVALYEREQQFRVTFEQAAVGIAHGGLDGEMLLVNQKYCDI 539

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
                  + T       LE     +     L+    ++ I        + +  +   +G 
Sbjct: 540 LGYPHEEMITK----SYLEITHPDDL---HLDNDYMRQLIAGEI-PYFSLEKRYIRKDGS 591

Query: 399 TLH----VIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
            +     V +  +P G     + + E+++ +   E       +     +   ++G+  + 
Sbjct: 592 CVWANLTVSLLRSPDGTPQYNMAVIEDISDRKQAEAALQASEERWQLALKGSNDGIWDWE 651

Query: 452 -PDGRIKL---SNPAFRSLWKTEENRLSPGT---HIRNIAATCSRYYNESDGWDLFAAII 504
              G +      N           N L   +   H  +I A  S   +       F    
Sbjct: 652 IKTGEVFYSPRWNEILEDPDGAIANNLDEWSNRVHPDDIDAVRSAIADHFAKKTSFYITE 711

Query: 505 TSFDDERKSLQGTLELLSDSVLEY-SIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEA 561
                +  + +  L     +  E  + + +  + T +T     +  R+E   +L E  +A
Sbjct: 712 HRIQCKNGNYKWILHRGRATWDEAGNPLRMVGSATDITDRKQAEQQRSELIASLQEARDA 771

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A   K+ F+ ++S+E+R+P+  +IG T LL  +    L  +Q  +VE +  S   LL
Sbjct: 772 AEAATRAKSEFLANMSHEIRTPMNAVIGMTSLLLDT---PLTPEQRDFVETVRTSGDALL 828

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
            L+NDILD + ++AG ++L      L D +      +A K  E  + +  I DG +  + 
Sbjct: 829 ALINDILDFSKIEAGKLELEEQPFDLRDCIEASLDLLAPKAAEKGLDLAYIIDGDVPSTI 888

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           V D  RL QI   +LSNA+ F++KG  V+   AR+
Sbjct: 889 VGDISRLRQILVNLLSNAVKFTAKGEVVVSVTARN 923



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 49/400 (12%), Positives = 131/400 (32%), Gaps = 31/400 (7%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + SE   T  + ++ S   ++   + ++L  L++     G  L          E   +  
Sbjct: 128 LGSEDYLTAKEAQRKSEEHNLL--ILNALPDLIFMVSADGTYLDVKSG---KDEDLLLPR 182

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVLNSFGE 288
           Q+ IG+  +         M+ +S  +              + +    +++   +  +  E
Sbjct: 183 QELIGKKVEAVLPSALATMVMASIQQAISTSQEQNCEYELILNSKKYNFESRILATNEAE 242

Query: 289 AGIAI-DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
             I I ++++      +    + I  +L   + I  ++ Y +  N +F +     +  L 
Sbjct: 243 VLIIIRNITERKQAELERDRFFTIDIDL---LCIAGRDGYFKRVNSAFEKALGYSIEELL 299

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
             P     +E +   ++    +  +     I +        ++ +   +G    +   S 
Sbjct: 300 KTP----FIELVHPEDRTSTLVEVEKLMNGIVNA-----RFENRYRCKDGSYKWLSWNST 350

Query: 408 P---RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAF 463
           P    G    +  ++T    ++       +   +  + + +   +  P   +    +PAF
Sbjct: 351 PFREEGLIYAIARDITDSKQVQDVITEERERFRQMAETIDQVFWMTDPQKNQFLYVSPAF 410

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELL 521
             +W      L    + +           +     +   I   +D E + +   G++  +
Sbjct: 411 EQIWGI--TCLEVYENPQLFFEFIHPEDRDRAIGAVETQIQGEYDREYRIIRRDGSVRWI 468

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            D             + +    ++TD   A+ AL E+ + 
Sbjct: 469 HDRAFPIRNSLGEVYRIVGVADDITDRHYAKVALYEREQQ 508


>gi|186686366|ref|YP_001869562.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468818|gb|ACC84619.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 807

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/362 (22%), Positives = 143/362 (39%), Gaps = 39/362 (10%)

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT---------- 505
           I   N A  S  +     L      RN+ A   R  N+  G +L     T          
Sbjct: 217 IVHPNSALMSTVEKPAPSLLKIGD-RNLNAIAQRMVNKQQGIELMEIDGTKQYVAYLPLQ 275

Query: 506 ------SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA--ERALTE 557
                 +    R++++  L+ L        +I L      LT + V   V+A  +R L +
Sbjct: 276 AANWSVALVIPRQNIESRLQFLD-------LIALIVGGLTLTMITVLWQVQAFEQRELKK 328

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
              A   A+  K+ F+ ++S+ELR+PL  I+G   +L  S   +L  ++  +V  I    
Sbjct: 329 SKAAADTANHAKSEFLANMSHELRTPLNGILGCAQILLRSP--ALPKQELYHVNIIEQCG 386

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           + LL L+NDILDL+ ++A  ++L    +     L  + +    +  +  I         L
Sbjct: 387 SHLLTLINDILDLSKIEAKKLELYPDDVHFPSFLQGIVEICHIRAKQKGILFVYKPGINL 446

Query: 678 GS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNG------DFIFSVKNNG 727
            +    D +RL Q+   +L NA+ F+ +G     + +     N          F+V++ G
Sbjct: 447 PTGIHVDVKRLRQVLLNLLGNAIKFTDEGQVTFNIEVIDRAPNDVQIIKHRLRFTVEDTG 506

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I       +F  F      + Q  G GLGL+I    + + G  + + S     ++   
Sbjct: 507 IGITPVELSQIFLPFEQVGEKKRQAEGTGLGLAITRQLVQMMGSDIHVHSQIGQGSSFLF 566

Query: 787 RI 788
            +
Sbjct: 567 EL 568


>gi|163791511|ref|ZP_02185917.1| sensor histidine kinase ResE [Carnobacterium sp. AT7]
 gi|159873234|gb|EDP67332.1| sensor histidine kinase ResE [Carnobacterium sp. AT7]
          Length = 598

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 152/371 (40%), Gaps = 36/371 (9%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               ++    +  +S GV  +  D  + +SNP         +  L        IA T   
Sbjct: 250 RQEKELLENIVTSISTGVLYYNQDKTLLMSNP-------LGDEFLQHLYRSGQIAKTTIP 302

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              E     +          E+ S    +    D     ++IPL +           +SV
Sbjct: 303 EVLEYRIDSVIRF------PEKVSYDNNI---DDYYYNITLIPLFDENL--------ESV 345

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R      +     ++ D ++N F+ ++S+ELR+PL  I G+++ +    +     ++ + 
Sbjct: 346 RGVLVSIQNITKEKRLDIMRNDFINNISHELRTPLVMIQGYSEAILDD-VAETQEEKKEM 404

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I   S  +  +VN++LD + ++AG + L    +   D    +    AT   +N I++
Sbjct: 405 AKIIGEESIRMNRMVNEMLDSSRMEAGFINLIKLDVDFEDFFKNLFTRFATMSEKNAIQL 464

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFS----SKGSTVILKAARDN--GDFIFSV 723
           K+  D  L S+  D  ++ Q+F  +++NA+  +     +   V +    D    + +  V
Sbjct: 465 KLTLDPNLESYYMDEDKMNQVFVNLINNAIRHTSMTNKENKKVEIWVHLDKIMDEVLIEV 524

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRG-----QRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +NG+ I E+    VF+RF             + G G+GLSIV++ I  HGG V + S  
Sbjct: 525 IDNGTGISEEDVPYVFDRFYKADKSRMVTKENKTGTGIGLSIVKNIIEAHGGFVEVKSVI 584

Query: 779 EGVTTINCRIP 789
              T     +P
Sbjct: 585 NEQTRFIVHLP 595


>gi|163800159|ref|ZP_02194060.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           sp. AND4]
 gi|159175602|gb|EDP60396.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           sp. AND4]
          Length = 1171

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 153/356 (42%), Gaps = 20/356 (5%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHIRNIAATCSRYYNESD 495
           + I++LS  V +    G + L+N  F  L    + +   S   H+ +I  T         
Sbjct: 526 KIINNLSSAVCITDSKGNVLLTNKEFVKLKENYSFKEDYSFVKHLLDITNT--------- 576

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
              +F      F     +   T +  +      S         ML   NVT     E+ L
Sbjct: 577 --QIFDDFTLDFSMFMPNCDETEKFYNIVNSSISHYLEKVELHMLVVSNVTLQKEREKML 634

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
           T+ +    K+   K +F+  +S+ELR+P++ I G  +LL+ S   S +   S+ +    A
Sbjct: 635 TQMSLDAEKSLIQKKNFLAIISHELRTPISGIAGILELLQKS---SQDEVMSEMLFNAIA 691

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SD 674
           SS  L  LV+DILD + +DA  + LN  ++ +   +  + +          +   V    
Sbjct: 692 SSNKLKLLVDDILDFSKLDADQLSLNLESVNIVTDICPIIKGFEVSAQNKGLDFIVDWVP 751

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +  F  D  R  QI S +LSNA+ F+++G  V ++           +K++G  +  + 
Sbjct: 752 SNVIYFEIDILRFTQIISNVLSNAIKFTNEGE-VEIRVILTTNKIKVIIKDSGIGMTREE 810

Query: 735 CKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              VF+ FV        +  G GLG+SIV++ IN+  G +++ SS    TT+   I
Sbjct: 811 QIKVFDPFVQAQDNITRKYGGTGLGMSIVKNLINMMSGSITLDSSVGIGTTVTLEI 866


>gi|37677080|ref|NP_937476.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37201625|dbj|BAC97446.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 720

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 15/355 (4%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D +++G+       ++     A + +   E    S  + I  +    + Y +E      
Sbjct: 116 LDAMTQGL------HQLTSRVAALKEVTSAEAVMPSLISEIDALYDRWNTYTSEVILQVE 169

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                     E+   Q     L+   +   II L     +        + +    + E  
Sbjct: 170 HNQSDFLLTREQFYHQQHWYYLAILFVSILIIALVFKLYIDQVRLTRFTQQQSLDMQEAK 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            A   + E K+ F+ ++S+E+R+PL  IIG +D   T    + + +  +Y++ I  S   
Sbjct: 230 RAAEASAETKSKFLANISHEVRTPLNAIIGLSD---TDHYLNASEQIREYIDLIHRSGKH 286

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDILD++ +D+G + L      L D++++ +     +     +   +I+      
Sbjct: 287 LLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLFHERTQTPGVESFIITPQDCDM 346

Query: 680 F-VADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSSIPEDMC 735
               D  RL QI S + SNA+ F+ +G       ++    N      V + G  I E   
Sbjct: 347 IFYGDPLRLFQIISNLCSNAIKFTHEGQIKVAFTVQNRGPNSVLQICVSDTGIGISEAQL 406

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + VF+ FV       R   G GLGL+I +   NL  G + I S     T +   +
Sbjct: 407 QKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGTLRIESELNRGTHVTLSL 461


>gi|238797166|ref|ZP_04640668.1| Signal transduction histidine-protein kinase barA [Yersinia
           mollaretii ATCC 43969]
 gi|238719013|gb|EEQ10827.1| Signal transduction histidine-protein kinase barA [Yersinia
           mollaretii ATCC 43969]
          Length = 915

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L   N+  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 268 ELGLANKRAQEAARIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 324

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 325 QRSANNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHI 384

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGS 728
           +  +    V D  RL QI + +L NA+ F+ +G+  IL A +         +  + + G 
Sbjct: 385 NNDVPEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVQALTAQRVTLVVEIHDTGI 444

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG +S  S  +  +T   
Sbjct: 445 GISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGSTFRF 504

Query: 787 RI 788
            +
Sbjct: 505 HL 506


>gi|154323950|ref|XP_001561289.1| hypothetical protein BC1G_00374 [Botryotinia fuckeliana B05.10]
 gi|150842603|gb|EDN17796.1| hypothetical protein BC1G_00374 [Botryotinia fuckeliana B05.10]
          Length = 1310

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 15/240 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  +   + 
Sbjct: 718 REAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNIVHNLAN 774

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +    D  + 
Sbjct: 775 SLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNALKTLAVKANEKFLDLTYRVDSSVP 834

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              V D  RL Q+   ++ NA+ F+  G  V L   +   D          F V + G  
Sbjct: 835 DHVVGDSFRLRQVILNLVGNAIKFTEHGE-VSLTIQKAEQDHCAPNEYAVEFCVSDTGIG 893

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F+ F        R   G GLGLSI +  +NL  G V + S     ++    
Sbjct: 894 IQADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|257425614|ref|ZP_05602038.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428275|ref|ZP_05604673.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430912|ref|ZP_05607292.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433601|ref|ZP_05609959.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410]
 gi|257436514|ref|ZP_05612558.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876]
 gi|282904071|ref|ZP_06311959.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160]
 gi|282905898|ref|ZP_06313753.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908808|ref|ZP_06316626.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911127|ref|ZP_06318929.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914296|ref|ZP_06322082.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899]
 gi|282919265|ref|ZP_06327000.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427]
 gi|282924590|ref|ZP_06332258.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101]
 gi|283958253|ref|ZP_06375704.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503373|ref|ZP_06667220.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510388|ref|ZP_06669094.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809]
 gi|293530927|ref|ZP_06671609.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015]
 gi|257271308|gb|EEV03454.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275116|gb|EEV06603.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278342|gb|EEV08978.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281694|gb|EEV11831.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410]
 gi|257283865|gb|EEV13988.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876]
 gi|282313425|gb|EFB43820.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101]
 gi|282317075|gb|EFB47449.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427]
 gi|282321477|gb|EFB51802.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899]
 gi|282324822|gb|EFB55132.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327072|gb|EFB57367.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331190|gb|EFB60704.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595689|gb|EFC00653.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160]
 gi|283790402|gb|EFC29219.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920195|gb|EFD97261.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015]
 gi|291095039|gb|EFE25304.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466752|gb|EFF09272.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809]
          Length = 582

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 223 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 280

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 281 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNTRFFVVTTSYIDK------- 333

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 334 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 367

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 368 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 426

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 427 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTY-DMDRMDQVLTNLIDN 485

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 486 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 545

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 546 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 582


>gi|34497034|ref|NP_901249.1| two-component hybrid sensor and regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|34102891|gb|AAQ59255.1| probable two-component hybrid sensor and regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 1234

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 143/316 (45%), Gaps = 9/316 (2%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +  + +R   +       +  +   + + +  Q  L   ++ + + +     + Q + 
Sbjct: 510 EQLRESNARMEEQQQQLQQQSEELQQSNAQMEEAQQQLRQQTEELQQANAQMEESQQQLE 569

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                 +  R E+    K   L +A + K+ F+ ++S+ELR+PL +II  + ++  +  G
Sbjct: 570 QQNRELEESRLEQE--AKARQLDQASKYKSEFLANMSHELRTPLNSIILLSKMMVNNDDG 627

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           ++  +  ++ + I  S   LL L+ND+LDL+ V+AG M ++ +T+   +L  E++     
Sbjct: 628 AVKDEALKWAQVIHRSGEDLLRLINDVLDLSKVEAGRMDVHLATLNSRELCAELQGMFEH 687

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--- 717
              +  +   V+ D     FV+D  +L QI   +L+NA+ F+  G  V L  +R      
Sbjct: 688 LARDKGLEF-VVDDRLQSDFVSDPDKLSQILRNLLTNAIKFTRSGG-VTLSMSRHPDLPL 745

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
               SV+++G  IP +    +F  F        R   G GLGL+I   F  + GG + + 
Sbjct: 746 PVRISVRDSGIGIPAEKKSVIFEAFQQADGSTSREFGGTGLGLTISLRFAQMLGGTIELE 805

Query: 776 SSDEGVTTINCRIPSK 791
           S+    +     +P +
Sbjct: 806 SAPGEGSEFIVWLPER 821


>gi|119716165|ref|YP_923130.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536826|gb|ABL81443.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 535

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 151/367 (41%), Gaps = 25/367 (6%)

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPA---FRSLWKTEENRLSPGTHIRNIAATCS 488
             +V     D +  G+ +    G  +  N     F  L   E ++   G       A  +
Sbjct: 184 QRRVSQAIFDTVDVGLVLLDESGAYQGINRRHADFIRLAFPEGHQGRAGQLGAVYDADGT 243

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQG---TLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
           R     +     A++   F+D R  +     T   LS S           A   L + +V
Sbjct: 244 RELAAEEMPTHRASLGEQFEDVRIWVGPDPLTRRALSVSARRVEDEAGALAGASLAYKDV 303

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           TD +RA R              +K+ FV  VS+ELR+PLT+I+G+T +L       L + 
Sbjct: 304 TDFMRALR--------------VKDEFVASVSHELRTPLTSIVGYTQMLLER--DDLPAD 347

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +E ++ +S  L  LV D+L  A +D G   L  + + L  ++ +  ++ A     +
Sbjct: 348 VVAQLEVMARNSGRLHRLVADLLHTARLDEGGAPLVRAPVDLAAVVRDCVEAAAPAARRS 407

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + + +     L    AD++RL Q+   ++SNA+ ++S G  V +    D       V +
Sbjct: 408 GVELVLELPPTL-VLRADQERLAQVVDNLVSNAVKYTSAGGCVQVTLLLDGDRAELCVAD 466

Query: 726 NGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F RF     A     +GVGLGLSI ++ +  HGG + + S     + 
Sbjct: 467 TGIGIAAADRDRLFTRFFRARQAEERSIQGVGLGLSITKAIVESHGGRIEVESELGRGSV 526

Query: 784 INCRIPS 790
              R+P 
Sbjct: 527 FRVRLPL 533


>gi|330792802|ref|XP_003284476.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum]
 gi|325085619|gb|EGC39023.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum]
          Length = 1555

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 551 AERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
           A + L   ++ LR+A+E    K  F+  VS+E+R+P++ I+    +L  S    ++S Q 
Sbjct: 652 ARKKLIIADQQLRRAEEINDAKIRFLTTVSHEVRTPISGILSSVGILDESL---VDSNQR 708

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+ +I  S+  LL+L+ DILD + ++AG M+L      L  +L +    +    H+  I
Sbjct: 709 EYLGFIKDSADYLLDLITDILDFSKIEAGKMELERVEFNLLKMLEDSINIVYRNAHDRGI 768

Query: 668 RIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFS 722
            +    +  +  F + D  R+ Q+    LSNA+ F+SKG   V +       +    +FS
Sbjct: 769 NVIHFVEPDVPIFLIGDSHRIKQVLLNYLSNAIKFTSKGQVMVKVSLVEKTNEGIKVMFS 828

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V+++G  I ++  + +F  F       Q  G GLGLSI +    + GG V   S+    +
Sbjct: 829 VEDSGVGIKDEFQEQLFQPFHQVGSLRQYLGTGLGLSISKRLTAMMGGEVGFRSTFGVGS 888

Query: 783 TINCR 787
           T    
Sbjct: 889 TFYFT 893


>gi|315221423|ref|ZP_07863344.1| PAS domain S-box [Streptococcus anginosus F0211]
 gi|315189542|gb|EFU23236.1| PAS domain S-box [Streptococcus anginosus F0211]
          Length = 450

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 138/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I + N         +E+  
Sbjct: 75  INDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIIMINDMATKQLGVKESEA 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                +        +  +  D +DL   I    +    S     E LS  V  +++I   
Sbjct: 135 RKMNIL--------KLLDIEDEYDLRDLITKVPELTIDSQDENGEFLSLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V+D+L L+ +D     L+         +  +
Sbjct: 235 DEGALS--EPVAPDFIKVSLDETNRMMRMVSDLLSLSRIDNATSHLDIELTNFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   ++  +    I             D  ++ Q+   I++NA+ +S  G  + + 
Sbjct: 293 LNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKMTQVIDNIINNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  H 
Sbjct: 353 MKTTDTQMILSISDEGLGIPKKDLPKIFDRFYRVDKARSRAQGGSGLGLAIAKEIIKQHH 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|297590965|ref|ZP_06949603.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MN8]
 gi|76363428|sp|Q6GGK7|SRRB_STAAR RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|297575851|gb|EFH94567.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312438041|gb|ADQ77112.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315195388|gb|EFU25775.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00]
          Length = 583

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNTRFFVVTTSYIDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 428 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTY-DMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 583


>gi|302418052|ref|XP_003006857.1| peroxide stress-activated histidine kinase mak1 [Verticillium
            albo-atrum VaMs.102]
 gi|261354459|gb|EEY16887.1| peroxide stress-activated histidine kinase mak1 [Verticillium
            albo-atrum VaMs.102]
          Length = 1773

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 19/246 (7%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K+ F+ ++S+E+R+PL  I G    L+ S    LN +Q  Y   I  S+  LL
Sbjct: 1109 LKEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDSV---LNEEQRDYTNTIQTSANSLL 1165

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       L+ +V + ++T      + +  + +  + +++
Sbjct: 1166 MIINDILDLSKVDAGMMKLKYEWFHTRALIEDVNELVSTMAIAKRLELNYVVEQNVPTWI 1225

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGST-----VILK----AARDNGDFIFSVKNNGSSIP 731
              D+ R+ Q+   ++ NA+ F+S+G       V          +     F++ + G    
Sbjct: 1226 KGDKVRIRQVLLNVIGNAIKFTSEGEVFSRCRVYTSETAMLTPNEIMLEFAIIDTGRGFT 1285

Query: 732  EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN---- 785
            E+  + +F  F     +   Q  G GLGL I    + LHGG +  ++     +T      
Sbjct: 1286 EEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGVMEGTAVPGKGSTFTFTAR 1345

Query: 786  CRIPSK 791
              +P++
Sbjct: 1346 FTLPTE 1351


>gi|312222273|emb|CBY02213.1| similar to two-component sensor protein histidine protein kinase
            [Leptosphaeria maculans]
          Length = 2472

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 13/248 (5%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             AE       +   +A + K+ F+ +VS+ELR+PL  +IG ++LLK S    LN +Q+ Y
Sbjct: 1956 EAEAIAIRNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKAS---PLNGEQAGY 2012

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR- 668
             + I   +  LL+++ND+LD + ++AG M +    + LN+ + EV +++A    E  ++ 
Sbjct: 2013 ADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPLSLNETITEVVRALAYTNAERGLKT 2072

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSV 723
            I+ +        + D  RL Q+   +LSN+  F+ +GS V ++A  D       D   SV
Sbjct: 2073 IEELYLDPEMLVMGDPVRLHQVMMNLLSNSYKFTPRGS-VTVRAVVDQEADDWVDITCSV 2131

Query: 724  KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFIN-LHGGHVSISSSDEG 780
             + G  IPE+  K +F  F    ++      G GLGLSI ++ I  +  G V + S    
Sbjct: 2132 IDTGIGIPEEQKKKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGKVWLDSVPGK 2191

Query: 781  VTTINCRI 788
             TT++  +
Sbjct: 2192 GTTVSFAL 2199


>gi|270488524|ref|ZP_06205598.1| PAS domain S-box [Yersinia pestis KIM D27]
 gi|270337028|gb|EFA47805.1| PAS domain S-box [Yersinia pestis KIM D27]
          Length = 796

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 148/371 (39%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   +     + +++      
Sbjct: 313 LDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    +AD  RL QI   ++ NA+ F+ +G  V+      N   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +       G R   G G+GL++ +      GG +++ S+
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGVGSCFTLTI 503



 Score = 41.1 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|197106645|ref|YP_002132022.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480065|gb|ACG79593.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 589

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 12/233 (5%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +E K++F+  V++ELR+P+  ++G    L+ +    L+ +Q +Y + I  S   LL ++N
Sbjct: 212 NEAKSAFLSMVTHELRTPMNGVMGMARALQQT---DLSPRQREYADTIVRSGDGLLAILN 268

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
           D+LD + ++AG + L  +   L  +  +  Q          + +    D +L    + D 
Sbjct: 269 DVLDHSKIEAGRLDLEVAPFNLRAVSQQSLQLWTEAAAAKGLELDCDIDPELPAHVLGDE 328

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSVKNNGSSIPEDMCKSVF 739
            R+ QI   +LSNA+ F+  G  V L   R       G     V + G  +  +    +F
Sbjct: 329 TRVRQIILNLLSNALKFTEAG-RVALALRRAPHADGEGGVEILVSDTGPGMTAEQVARLF 387

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +        RR  G GLGLSI      + GG + + S     +T    +P 
Sbjct: 388 RPYSQAEASTARRFGGTGLGLSICHRLSTMMGGEIGVESEPGRGSTFRVWLPL 440


>gi|320180364|gb|EFW55295.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella boydii ATCC 9905]
          Length = 1127

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  I       D+   +   ++ ++GS
Sbjct: 745 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSMVHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|307708757|ref|ZP_07645219.1| sensor protein YycG [Streptococcus mitis NCTC 12261]
 gi|307615123|gb|EFN94334.1| sensor protein YycG [Streptococcus mitis NCTC 12261]
          Length = 452

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 140/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +     ++  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLHSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              + +  +     +  +E +  DL   +     D   S     E LS  V  ++++   
Sbjct: 135 LNKSILELL-----KIEDEYELRDLITQVPELMID---SQDANGEYLSLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALS--EPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                       E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRGSDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVT 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF        R   G GLGLSI +  I  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSIYGKGSTFTIVLP 432


>gi|194432900|ref|ZP_03065184.1| sensor histidine kinase/response regulator EvgS [Shigella
           dysenteriae 1012]
 gi|194418888|gb|EDX34973.1| sensor histidine kinase/response regulator EvgS [Shigella
           dysenteriae 1012]
 gi|332090130|gb|EGI95229.1| sensor protein evgS [Shigella dysenteriae 155-74]
          Length = 1128

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 449 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 508

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 509 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 567

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 568 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 627

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 628 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 685

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 686 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 745

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  I       D+   +   ++ ++GS
Sbjct: 746 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSMVHIDDNHAVIKMTIMDSGS 805

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 806 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 865

Query: 789 PSK 791
           P +
Sbjct: 866 PVE 868


>gi|303327881|ref|ZP_07358321.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862242|gb|EFL85176.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 976

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 12/254 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D   AE+      E   +A   K+ F+  +S+E+R+P+  I+G T L   +   +   KQ
Sbjct: 301 DLREAEKNALAAKEQAEEASRAKSDFLARMSHEIRTPMNAILGITYLCLQTTHEN---KQ 357

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I ++   LL ++NDILD++ ++AG M L      L +L+  +       +   N
Sbjct: 358 LYYLRKILSAGRGLLGIINDILDVSKIEAGKMTLQNEAFALQELVENLSDLCGALVGGKN 417

Query: 667 IRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI--F 721
           I +    D  +  +   D  RL Q+ + +L NA+ F+ KG  V  I +  R         
Sbjct: 418 IEVLFHVDPNVFVTVEGDLLRLTQVLTNLLGNAVKFTEKGRVVLRIEELGRGADTITLGI 477

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           SV + G  + E+    +F  F        RR  G GLGL I + F+ + GG + + S   
Sbjct: 478 SVSDTGIGLTEEELARLFKPFEQADGSITRRYGGTGLGLVICQRFVRMMGGELEVRSEPG 537

Query: 780 GVTTINC--RIPSK 791
             +  +    +P +
Sbjct: 538 KGSAFSFSLTLPYR 551


>gi|257129263|gb|ACV42481.1| putative adenylate/guanylate cyclase [Lyngbya majuscula 19L]
          Length = 1156

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 26/260 (10%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L+  D++KN F+ + S+ELR+PL  +I   + L     G L SK +  +  I+
Sbjct: 445 LEAKNTELQHLDQLKNEFLANTSHELRTPLNGMISIAESLMDGVAGQLPSKANANLAIIA 504

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L NLVND+LD + +    ++L    + L ++ N +     + + +  +++     
Sbjct: 505 SSGKRLGNLVNDLLDFSKLKHKHLELQIKPVSLREIANLILGHSQSLIGKKPLQLINSIA 564

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGDFIFSVKNNGS 728
             +    AD  RL QI   ++ NA+ F+  G  V + A +      +    + +V + G 
Sbjct: 565 ADMPLVDADENRLQQIIYNLIENAIKFTESG-KVEVSAEQLPVSNDELPMLVITVSDTGI 623

Query: 729 SIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSI------------ 774
            IP D    +F+ F  V  +   +  G GLGL++    + LHGG + +            
Sbjct: 624 GIPADKLNRIFDSFESVDCSRTKEYGGRGLGLAVTRQLVELHGGKIHVRSLRLGEAQCCL 683

Query: 775 -----SSSDEGVTTINCRIP 789
                 S ++  +     +P
Sbjct: 684 GGSPKRSQNKSGSQFTFTLP 703


>gi|254429940|ref|ZP_05043647.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196196109|gb|EDX91068.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 846

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             R   + K  F+  +S+E+R+PL  +IG  +LL+ +     + +Q +Y+  I ++   L
Sbjct: 341 NARAESQAKGLFLARMSHEIRTPLNGVIGLAELLRET---DPSPRQQEYISLIDSAGRTL 397

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
             L+ND+LD A ++AG ++L      L  LL E  Q       +N   + +  D    S 
Sbjct: 398 TALINDVLDFAKIEAGKLELVEERFDLPTLLAECVQMFNLPASDNGTLVILDVDPHTPSD 457

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDF---IFSVKNNGSSIPEDMC 735
            V D  RL QI   ++ NA+ F+  G  V+ L   R  G+     F+V + G  + +D  
Sbjct: 458 VVGDAIRLRQILINLIGNAVKFTRNGRVVLSLVCRRHGGEVPLFTFAVTDTGIGLTQDEQ 517

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F RF   +    RR  G GLGLSI    + L GG + + S+    +  +  I
Sbjct: 518 TQLFQRFTQASANTARRYGGTGLGLSISRELVGLMGGEIHVHSAPGLGSRFSFSI 572


>gi|124515967|gb|EAY57476.1| putative multi-sensor hybrid histidine kinase [Leptospirillum
           rubarum]
          Length = 851

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  EA   A++ K+ F+ ++S+ELR+PL  I+G ++LL+       + +Q++ +  + 
Sbjct: 184 LEKLIEAANAANQSKSRFLANMSHELRTPLNGIMGLSELLREQA----SPRQNELLNTLQ 239

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L ++++ ILD + ++AG M ++  T  +  ++ E   ++     + N+ + V+ D
Sbjct: 240 GSARHLSDIISKILDFSRLEAGRMTVSLVTFDVGQVVAETVSALLPLARQKNLPVTVLMD 299

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGDFIFSVKNNGS 728
            +   S   D   L QI + +L NA+ F+  G        +L +        F V + G 
Sbjct: 300 ARFPSSLRGDPFHLKQILTNLLGNAIKFTESGEVALTVTPVLTSDTRELSVRFEVSDTGI 359

Query: 729 SIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E+    +F  F         +  G GLGL+I    ++L  G +   S     +   C
Sbjct: 360 GIAEEEKSRIFESFSQGDDSVTKRYGGAGLGLAITRQLVDLEKGKLGFLSHSGKGSIFWC 419

Query: 787 RIP 789
            IP
Sbjct: 420 TIP 422


>gi|147669243|ref|YP_001214061.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|146270191|gb|ABQ17183.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 852

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/680 (16%), Positives = 240/680 (35%), Gaps = 48/680 (7%)

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
              ++    GQ F+L    +N       G    S    R      +    ++ T+ CKK 
Sbjct: 203 MFQDRKPDTGQPFELQLIHKNGQTCWFSGH---SRIINRDNKSSYLQLSASDITI-CKKS 258

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA-IGESRKLFKEE 247
              + + +   +     ++  D  G+ +  N S   +         K  + +   L   +
Sbjct: 259 EKMLRLTRFALEQTTDAIFWTDSEGNFVDVNQSACNSLGYRREDLLKLKVTDIDALITNQ 318

Query: 248 IKKRMISSSALEKNF--CETVSTLEHGNNKSYKIV----RVLNSFGEAGIAIDVSKEITV 301
                   +     +   E++     G     +I     +         IA ++      
Sbjct: 319 TDWEAHWKNLKNSAYLSFESIHRNISGEEIPVEITANYMQCDKMEYNVAIARNIHLRKEA 378

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             QL  T   + +   ++   +Q+  +   N S  +        L +          L  
Sbjct: 379 EKQLKFTSFSVEHTADSVLWVNQSGSIIAANMSACQSLGYTRTELCS----------LNV 428

Query: 362 ANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVTSN-----PRGGTIWM 415
            N  P     + WK     + +  + + +      NGQ + + V  N            +
Sbjct: 429 ININP-VCVAERWKTLWVRLKQDINFSLESDMFTKNGQQIPIEVMCNFLEFEGIDYCCAV 487

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
             ++T +  ++ +     +    T D++S+ V +   D  I+ +N AF      +   + 
Sbjct: 488 LRDITERKKVDARLLRAAEEWRITFDNISDIVFLLDNDFNIQRANRAFTKTLNCQPQDV- 546

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                  +   C +  + +D   +    + + D ++       E   D   E +I P+ +
Sbjct: 547 -------LNKKCYQVLHHADCPKVNCPKLIASDTKKSQRIAYFEKNIDKHFEETIDPILD 599

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
              +      T     E+        +             +++EL +PLT++IGF++L++
Sbjct: 600 TNGLSMGTVHTIKDVTEQHKITAQLMITDRLASLGELSAGLAHELNNPLTSVIGFSELIQ 659

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L     Q ++ IS  +     ++ ++L  A       + +   + +N ++++V 
Sbjct: 660 EKI---LPEDLRQDIQIISQEAQRAAEIIRNLLTFAR----RHEPSKDWVDMNQIIHKVL 712

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF---SSKGSTVILKA 712
                    +NI++    D  L    AD  ++ Q+   I+ NA  F   S    T+++ +
Sbjct: 713 AICNYGQKVHNIQLITNLDPNLPEIKADYFQMQQVLLNIVINAEYFMTQSHGEGTIVISS 772

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            + N     S++++G  + E++   +F+ F +    G  +G GLGLSI    I  HGG +
Sbjct: 773 RKFNDSIQISIRDDGPGMSENVLNHIFDPFFTTKEVG--KGTGLGLSIGHGIITQHGGKL 830

Query: 773 SISSSDEGVTTINCRIPSKE 792
              SS+    T    IP  +
Sbjct: 831 YAESSEGKGATFFIEIPINQ 850



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 105/315 (33%), Gaps = 34/315 (10%)

Query: 211 QAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK---RMISSSALEKNFCETVS 267
             G +++AN  +++ T            +S  LF  E      +M      +      + 
Sbjct: 159 PDGKLIFANHIFEEVTGYLVSEVTGEDWKSCGLFSRETTDLIIKMFQDRKPDTGQPFELQ 218

Query: 268 TL-EHGNNKSYK-----IVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAI 321
            + ++G    +      I R   S      A D++        L  T   L   T AI  
Sbjct: 219 LIHKNGQTCWFSGHSRIINRDNKSSYLQLSASDITICKKSEKMLRLTRFALEQTTDAIFW 278

Query: 322 FDQNRYLQFHNRSFVE-LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT-WKENIF 379
            D        N+S    L       L    ++ + L        +  Q +W+  WK    
Sbjct: 279 TDSEGNFVDVNQSACNSLGYRREDLLKLKVTDIDAL--------ITNQTDWEAHWKNLKN 330

Query: 380 SVYKSSET-HKDTWHLPNGQTLHVIVTSN-----PRGGTIWMFENLTVQVDLETKYNTLV 433
           S Y S E+ H++     +G+ + V +T+N          + +  N+ ++ + E +    +
Sbjct: 331 SAYLSFESIHRNI----SGEEIPVEITANYMQCDKMEYNVAIARNIHLRKEAEKQ----L 382

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           K    +++H ++ V      G I  +N +           L     I NI   C     +
Sbjct: 383 KFTSFSVEHTADSVLWVNQSGSIIAANMSACQSLGYTRTELCSLNVI-NINPVCVAERWK 441

Query: 494 SDGWDLFAAIITSFD 508
           +    L   I  S +
Sbjct: 442 TLWVRLKQDINFSLE 456



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 27/269 (10%)

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           F  +  L F N  F E+    ++ +           F R    L      K +++     
Sbjct: 157 FQPDGKLIFANHIFEEVTGYLVSEVTGE-DWKSCGLFSRETTDL----IIKMFQDRKPD- 210

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             + +  +      NGQT      S      N          ++T+    E     ++++
Sbjct: 211 --TGQPFELQLIHKNGQTCWFSGHSRIINRDNKSSYLQLSASDITICKKSEK----MLRL 264

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               ++  ++ +     +G     N +  +        L         A   ++   E+ 
Sbjct: 265 TRFALEQTTDAIFWTDSEGNFVDVNQSACNSLGYRREDLLKLKVTDIDALITNQTDWEAH 324

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +L  +   SF+   +++ G  E+  +    Y          +    N+     AE+ L
Sbjct: 325 WKNLKNSAYLSFESIHRNISGE-EIPVEITANYMQCD-KMEYNVAIARNIHLRKEAEKQL 382

Query: 556 -------TEKNEALRKADEIKNSFVQHVS 577
                      +++   ++  +    ++S
Sbjct: 383 KFTSFSVEHTADSVLWVNQSGSIIAANMS 411


>gi|300863849|ref|ZP_07108773.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300338152|emb|CBN53919.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 725

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 143/371 (38%), Gaps = 43/371 (11%)

Query: 459 SNPAFRSLWKTEENRLSPGTH---------IRNIAATCSRYYNESDGWDLFAAIITSFDD 509
            N     L    ENRL              +        R  +     +     + + D 
Sbjct: 110 INRQLDDLQPLVENRLEQINDTIKLRRSQGLDAALLEIKRNQDAQKLSNRIRVAVKNIDA 169

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTML----------TFVNVTDSVRAERALTEKN 559
           + +++    +  + S L+ SII                    +  +    + E  L E  
Sbjct: 170 QERAVLFERQQEAGSSLQRSIIAFVGGSVFNLLIFTWVFRLIYDEIFKRKQTEIQLKEAK 229

Query: 560 EALRKA-------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           E   +A       +  K+ F+ ++S+ELR+PL  I+G+  +L  SK  ++   + + +E 
Sbjct: 230 EEAEQAKLAAEVANSAKSEFLANMSHELRTPLNGILGYAQILIRSK--NIQENELKGLEI 287

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I    + LL L+NDILDL+ ++A  M+L  +       L  V + +  K  +  I     
Sbjct: 288 IQQCGSHLLTLINDILDLSKIEARKMELAPNEFHFLAFLQAVSEIVRIKAEQKGIAFISQ 347

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-----VILKAARDN--------GD 718
            D  L  S  AD +RL Q+   +L NA+ F+ +G       VI  +  +           
Sbjct: 348 FDPALPISVQADEKRLRQVLINLLGNAVKFTDRGGVTFKVGVIESSTIEPEASTLNAVNK 407

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F +++ G  + E+  + +F  F      +    G GLGL+I    + + G  + ++S 
Sbjct: 408 IRFQIEDTGVGMSEEQRQKIFIPFEQVGETKRMAEGTGLGLAISSKIVEVMGSKICVTSQ 467

Query: 778 DEGVTTINCRI 788
            E  +     +
Sbjct: 468 LEQGSQFWFDL 478


>gi|218282497|ref|ZP_03488753.1| hypothetical protein EUBIFOR_01335 [Eubacterium biforme DSM 3989]
 gi|218216552|gb|EEC90090.1| hypothetical protein EUBIFOR_01335 [Eubacterium biforme DSM 3989]
          Length = 673

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/484 (19%), Positives = 204/484 (42%), Gaps = 36/484 (7%)

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
           F+  ++ D+        + E  +     N + +Q  +      I+ +Y    T       
Sbjct: 51  FLNSFKFDVE--KRKNIHFEFKDLEIEENIVDDQCVFVYGSVKIYGLYDKEVTIIHL--- 105

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK-----YNTLVKVQGETIDHLSEG--- 446
            + +   +    + +   + +  ++  +  LE +         V+     ++ LS G   
Sbjct: 106 -DSRFTIIYGVRDGKWKVLHIHHSIPDKEQLEDEEFPITLGKQVQQARHEVEALSAGYSY 164

Query: 447 VAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
           + +   + G ++L              ++     +  +    ++ + +S      +  I 
Sbjct: 165 ICLINLETGDVELIKGNNIPGLNGRYTQMDHNILLEQVNRLIAKPFRQSSVEFYDSKTIA 224

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPL---PNAQTMLTFVNVTDSVR-------AERAL 555
              + + SL  T E    + +   I+P     N + +   +   D           E AL
Sbjct: 225 KRLEGKNSLFHTCERTDGTWILSMIVPQKYDENGRVVSVLLANRDFTEEKKRELEQEEAL 284

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            ++     KA+E K+ F+ ++S+++R+P+  I+G++ L+K       N K   Y E I  
Sbjct: 285 RQEKIKAEKANEAKSIFLFNMSHDIRTPMNAIVGYSQLMKKEL---TNPKLVHYQEMIEQ 341

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           SS +LL+++N++LD+A V++G M+L+ +  V+ ++   V  + A +    NI + +I + 
Sbjct: 342 SSKLLLSIINNLLDMARVESGKMELDENYEVIGNISQLVCSAFAAEASRKNIELNIIVNV 401

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFS--VKNNGSS 729
           +    + D  ++ +I S ++SNA+ ++S G  V +          G  +    V + G  
Sbjct: 402 EHKHIIVDSTKMQEILSNLISNAIKYTSAGGKVTIDTKELPYDKEGYVLIQTKVTDTGIG 461

Query: 730 IPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + E+   S+F  F    +    +  G GLG++IV++F++L  G + + S     +T    
Sbjct: 462 MSEEFLPSLFELFTRERNTTLSKIPGTGLGMAIVKNFVDLMNGSIEVESELGKGSTFTIT 521

Query: 788 IPSK 791
           IP K
Sbjct: 522 IPHK 525


>gi|149915148|ref|ZP_01903676.1| two-component hybrid sensor and regulator, putative [Roseobacter
           sp. AzwK-3b]
 gi|149810869|gb|EDM70708.1| two-component hybrid sensor and regulator, putative [Roseobacter
           sp. AzwK-3b]
          Length = 1108

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 116/257 (45%), Gaps = 8/257 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT      +    R +RAL E  E    A+  K  ++  +S+ELR+PL  I GF  LL+ 
Sbjct: 633 QTDRLLKEIRAHDRTDRALQEAKEKAEAANLAKTRYMTGLSHELRTPLNAIYGFAQLLEK 692

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  +     +  I  SS  L  L+  +LD++ ++AG + L    + L   + +V  
Sbjct: 693 DPGL---APWRPSITSIRRSSEHLAGLIEGLLDISRIEAGRLDLTRDRVNLRMFVKQVAS 749

Query: 657 SIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  +  I  +V + G L + V  D +RL QI   +LSNA+ ++  G  V       
Sbjct: 750 IFQEEARKKGIDFRVTTHGFLPTLVGTDEKRLRQIIINLLSNAIRYTDSG-VVSFDLTYR 808

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           N   I +V + G  I  D    ++  F   A +    G GLGL+I +  + + GG + ++
Sbjct: 809 NEVAIITVADTGIGISPDNMTRIWRPFER-AGQTSGPGSGLGLTITKLLVEILGGDIDVT 867

Query: 776 SSDEGVTTINCR--IPS 790
           S+    +T   R  +PS
Sbjct: 868 SAPGQGSTFRVRMMLPS 884


>gi|239993534|ref|ZP_04714058.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas macleodii ATCC 27126]
          Length = 890

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 116/252 (46%), Gaps = 17/252 (6%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             +A+TE      +A   K+ F+ ++S+E+R+P+  IIG  +L +  +   L++    Y+
Sbjct: 375 LNKAITEAKIKAEQATASKSMFLANMSHEIRTPMNGIIGLIELAQQQE---LSTTVKGYL 431

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +  + S  ILL+++NDILD + ++AG +K+   +  L+ L + +   IA +  E N+ + 
Sbjct: 432 DKAAYSGQILLSVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALRAKEKNLSVH 491

Query: 671 VISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------DFIF 721
              + K     + D  R+ QI   I +NA+ F+ +G    +    D          +   
Sbjct: 492 FTVNPKIPPQVIGDPLRIAQIIMNIGNNAVKFTEQG---RIDIEFDGNLNEKGNVLNLTM 548

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
            + ++G  +       +F  F        R   G GLGL+IV     L  G +  +S+  
Sbjct: 549 RITDSGIGMSAAQLDRIFKPFTQADGSTNRKYGGTGLGLAIVSQLTELMNGRLDATSTMG 608

Query: 780 GVTTINCRIPSK 791
             +T    +P K
Sbjct: 609 KGSTFEVELPLK 620


>gi|27367329|ref|NP_762856.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27358898|gb|AAO07846.1|AE016811_87 Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 716

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 15/355 (4%)

Query: 440 IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           +D +++G+       ++     A + +   E    S  + I  +    + Y +E      
Sbjct: 112 LDAMTQGL------HQLTSRVAALKEVTSAEAVMPSLISEIDALYDRWNTYTSEVILQVE 165

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
                     E+   Q     L+   +   II L     +        + +    + E  
Sbjct: 166 HNQSDFLLTREQFYHQQHWYYLAILFVSILIIALVFKLYIDQVRLTRFTQQQSLDMQEAK 225

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            A   + E K+ F+ ++S+E+R+PL  IIG +D   T    + + +  +Y++ I  S   
Sbjct: 226 RAAEASAETKSKFLANISHEVRTPLNAIIGLSD---TDHYLNASEQIREYIDLIHRSGKH 282

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL L+NDILD++ +D+G + L      L D++++ +     +     +   +I+      
Sbjct: 283 LLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLFHERTQTPGVESFIITPQDCDM 342

Query: 680 F-VADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNGDFIFSVKNNGSSIPEDMC 735
               D  RL QI S + SNA+ F+ +G       ++    N      V + G  I E   
Sbjct: 343 IFYGDPLRLFQIISNLCSNAIKFTHEGQIKVAFTVQNRGPNSVLQICVSDTGIGISEAQL 402

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + VF+ FV       R   G GLGL+I +   NL  G + I S     T +   +
Sbjct: 403 QKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGTLRIESELNRGTHVTLSL 457


>gi|327538858|gb|EGF25501.1| sensory box histidine kinase [Rhodopirellula baltica WH47]
          Length = 417

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 161/397 (40%), Gaps = 32/397 (8%)

Query: 405 TSNPRGGTIWMFENLTVQVDLETK----YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
           +S           + T ++    +     +   +     +  LS+GV V   D  + L N
Sbjct: 36  SSQQDDAVAAYVRDSTEEIQKWQERLRCLHAETRQNASALLQLSDGVIVLAKDFSVLLIN 95

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           P+   L   ++             A   R + E        A I S   E++  + T+E+
Sbjct: 96  PSAVRLLGLKKRD-----------ALLGRCFTELVRVPQLLASIRSAVREQQPQEFTVEV 144

Query: 521 LSDSV---LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
               V   L   +  +   +     +++ D   A R            +E++  F+ +VS
Sbjct: 145 HDQGVMRPLRVRVDLIDTGEEPNLQLSLRDETEARR-----------VEEMRREFIANVS 193

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++PL  I G+ + ++ +     ++    +++ I +    L  LV++++ LA   AG 
Sbjct: 194 HELKTPLAAIKGYAETVELAVQDDPDA-ALHFMQQIMSQCLRLERLVHEMMQLARAQAGP 252

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             L+ S++ L++++++  ++       N + +           +ADR+  L I + ++ N
Sbjct: 253 ANLHLSSVSLSEIVSDAIRTYEPVAAANGLDLIQEVPSGEAKIIADREATLTIANNLIGN 312

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
           A+ ++  G  + +        +   V++ G  IP    + +F RF   +        G G
Sbjct: 313 ALRYTPSGGEIRVSIVEQTDQWALVVEDTGVGIPYSEQQRIFERFYRGSRNEESSTSGTG 372

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+IV+       G VS++S+    +     +P+ +
Sbjct: 373 LGLAIVKHLTQAQQGDVSVTSTPGEGSRFCVCLPAVQ 409


>gi|312883344|ref|ZP_07743070.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368960|gb|EFP96486.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 848

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 409 RGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
           +G +I  F+ +    ++   + +   K   +  +     +A++  +  +   NP+   ++
Sbjct: 330 KGSSIKEFDQIGRSFEVSFRRLDETEKQFSDLFNFSLSPIAIWSIEDTVPSLNPSAERIF 389

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
               ++         +  + + + N          I  S   +      +  L  D +++
Sbjct: 390 PDAVSK-------HQLVESLAPHINLCFKGATLTGINISVHSKVYRWNLSPILSDDKIVK 442

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                      M    ++T  V AE+   E  +    + + +  F+  +S+ELR+PL  I
Sbjct: 443 I----------MAQGQDITSFVMAEKESDEARKEAEASAKNQADFLARMSHELRTPLNGI 492

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   LLK   +   + ++   +E + +S   LL ++NDILD + ++     +  +   L
Sbjct: 493 MGVAQLLKGRMVDKQDIEK---MEVLCSSGEHLLAVLNDILDFSKIEQSSFNIEGAKFHL 549

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +DL   +++       E  +  ++ S+        +D+ RL Q+   ++SNA+ F+ +G 
Sbjct: 550 SDLGYSIEKVFGPICFEKGLMFELRSNIEDDIWVFSDQVRLNQVIYNLVSNAVKFTHEGE 609

Query: 707 TVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSI 760
            V L  +   G         V + G  I  +  +++F+ FV           G GLGL+I
Sbjct: 610 VV-LSLSYSQGSEFSQLHIEVSDTGIGIKNERLEAIFDPFVQAGPDTTQIYGGSGLGLAI 668

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           V+S +   GG V + S     T     +P +
Sbjct: 669 VQSLVTTMGGKVGVESVYGSGTRFFITVPIQ 699


>gi|239625343|ref|ZP_04668374.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519573|gb|EEQ59439.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 946

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 8/240 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            +  + E        K  F+  +S+E+R+P+  I+G  +L  T     L  +    ++ I
Sbjct: 555 MIQGELEKAEAQSRAKGEFLSRMSHEIRTPMNAIMGLANL--TCMEERLPERVETNLKKI 612

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +SS  LL+L+NDILD++ ++ G M++   +  L  LL++++  + ++     I   V  
Sbjct: 613 LSSSQYLLSLINDILDMSRIENGKMEIMDESFNLRHLLSDLEGMMRSQAESKGILFTVDL 672

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGS 728
                    D  RL Q+   +LSNA+ F+ +   V L       D     F+FSVK+NG 
Sbjct: 673 GIIHSDIQGDPVRLRQVLVNLLSNAVKFTPENGQVKLLVQETESDETKAAFLFSVKDNGI 732

Query: 729 SIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I E+  K +F+ F    +   +  G GLGL I  + +N  GG + + SS          
Sbjct: 733 GIEEEYQKKIFDSFEQIGSSSAKSAGTGLGLPISSNIVNAMGGELKVRSSPHKGAEFYFH 792


>gi|319954568|ref|YP_004165835.1| pas/pac sensor signal transduction histidine kinase [Cellulophaga
           algicola DSM 14237]
 gi|319423228|gb|ADV50337.1| PAS/PAC sensor signal transduction histidine kinase [Cellulophaga
           algicola DSM 14237]
          Length = 783

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 138/797 (17%), Positives = 289/797 (36%), Gaps = 85/797 (10%)

Query: 45  IRQRNS----LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLH 100
           ++ R      L  K  E Y     + +   +   +L+E +            P ++  L 
Sbjct: 17  VKARKQAESILEAKSKELYDTTRHLQEVNDRLEDMLSEKSSELNEIFVNIVDPYVVMDLS 76

Query: 101 QRI-DIPQTDTDLL--------SFENWLKFHHYIKLSKATEKLRKEGQSFD----LVAET 147
             I  + +   + L        S  +++   +      + + L + G   +     V + 
Sbjct: 77  GEIIKMNKAAREFLECDPDEKVSLSSYIHKDYIEYTYNSLKSLIEVGTIKNYRPKFVLKN 136

Query: 148 QNDCAIKIEG--------RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199
                +++ G        +  G+   +R +S D    EL         L+N      ++ 
Sbjct: 137 GAIKHVEVNGSIIYDRDRKPIGAQGIIRDISQDSEVKEL---------LANQKKQLDIIV 187

Query: 200 DSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFK--EEIKKRMISSSA 257
           ++    +   D    I+ AN +            +K   +S    K   E K  M     
Sbjct: 188 ENSPLGIILTDNE-RIIKANEAVLTLLGYSNTEIKKHSLDSISCPKNVSEAKNLMKKMDM 246

Query: 258 LEKNFCETVSTLEHGNNKSYK----IVRVLNSFGEAGIAI----DVSKEITVNDQL---- 305
            E +    + T    + K       +  V N  GE    +    D++KE+   +QL    
Sbjct: 247 GELDNFSVIKTFVKKDGKKVHTKTAVSAVKNQIGEIDYKVAIIEDITKELEAEEQLKASE 306

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE--IDLAFLATNPSNDELLEFLRSAN 363
                ++ NL   I + D++R +   N+     ++  I    L        + +      
Sbjct: 307 NRLSSLIANLHTGILVEDEHRNIVLANKMLCNFFDVDIPPHRLVGVDCFSAMKDH----K 362

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH----VIVTSNPRGGTIWMFENL 419
            L +  +++  + +     K+  T  D   + +G+ L      I       G +W + ++
Sbjct: 363 GLFKNPDFELERIDKIIQNKTL-TLSDELEMADGRILERDYIPIFNKGVYNGHLWTYTDV 421

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T+  + +       +     I +++ G+        I+  N +F ++    E  L     
Sbjct: 422 TISRNYKRNLEVQKEKYSSIIANMNLGLLEVNIHEVIQTVNQSFCTMSGYTEKEL----- 476

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NA 536
              +    +     ++   + A        E  S +  +     S   + I   P   ++
Sbjct: 477 ---LGKKATDLIKITNTGTMPAKSKKRLKGESDSYEVEVIQKDGSTRHWFISGAPRYSDS 533

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKN----SFVQHVSYELRSPLTNIIGFTD 592
             ++  + +   +  ++ L  + E L K  E  N     +   VS++L+SPL +I     
Sbjct: 534 GKVIGSLGIHLDITVQKQLELQKETLVKELEKSNVGLQEYAHIVSHDLKSPLRSISALCT 593

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L       L+      +  +      + NL++ IL  +T++     +  +++ +N+++ 
Sbjct: 594 WLNEDYQDKLDDNGKYNLAMMQEKVEAMDNLIDGILKYSTINND--TIENTSVDVNEVIK 651

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILK 711
           E+   I T  H     +K++   KL +  ADR ++ Q+    LSNA+     +   V + 
Sbjct: 652 EITDIIYTPDH-----VKIVVTNKLPTIFADRTKIHQLIQNFLSNAVVHIERENGLVEIG 706

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
                  + FS+K+NG  IP++  + +F  F S  +  + R  G+GLSIV+  I+L+ G 
Sbjct: 707 CIETKTHWQFSIKDNGVGIPKEYHEKIFKIFQSVGN--KERSTGIGLSIVKKIIDLYEGQ 764

Query: 772 VSISSSDEGVTTINCRI 788
           V + S     TT    +
Sbjct: 765 VWLESEIGVGTTFFFTL 781



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 80/248 (32%), Gaps = 35/248 (14%)

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
            +   L K  + +++ +    E         L        ++   L              
Sbjct: 3   NKEVSLLKRALDRQVKARKQAESILEAKSKELYDTTRHLQEVNDRL-------------- 48

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  ++++ +   EI  N+     + D +  +   N++  E  E D     +  S     +
Sbjct: 49  EDMLSEKSSELNEIFVNIVDPYVVMDLSGEIIKMNKAAREFLECDPDEKVSLSSYIH-KD 107

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN--------PR 409
           ++        +  + + K  I     + + ++  + L NG   HV V  +        P 
Sbjct: 108 YI--------EYTYNSLKSLI--EVGTIKNYRPKFVLKNGAIKHVEVNGSIIYDRDRKPI 157

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G    +  +++   +++       K     +++   G+ +   + RI  +N A  +L   
Sbjct: 158 GAQ-GIIRDISQDSEVKELLANQKKQLDIIVENSPLGIILTDNE-RIIKANEAVLTLLGY 215

Query: 470 EENRLSPG 477
               +   
Sbjct: 216 SNTEIKKH 223


>gi|325916989|ref|ZP_08179230.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            vesicatoria ATCC 35937]
 gi|325536799|gb|EGD08554.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            vesicatoria ATCC 35937]
          Length = 1185

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 11/257 (4%)

Query: 543  VNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  +RA+  +   K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   S
Sbjct: 780  YRHRVRMRAQWQVAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---S 836

Query: 602  LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
            L+++Q  Y   I ++   LL LVND LDLA ++AG + L+     L  L+ +  + +   
Sbjct: 837  LDARQQGYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDNRDFDLRLLIGQAVELVRPS 896

Query: 662  MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN--G 717
              +  +  +   D  L      D  R+ QI   +L NA+ F+ +G   + + A   +   
Sbjct: 897  AEQKQLAFECALDDALPPALHGDASRVQQILLNLLFNAVKFTERGGVQLRVSALPQSPAQ 956

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSI 774
                 V + G  +  +    +F RF          +  G GLGL+I        GG VS+
Sbjct: 957  GIRVEVCDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVSV 1016

Query: 775  SSSDEGVTTINCRIPSK 791
             S           +P +
Sbjct: 1017 DSELGQGACFVVELPLR 1033


>gi|308070736|ref|YP_003872341.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305860015|gb|ADM71803.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 1239

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/410 (22%), Positives = 183/410 (44%), Gaps = 30/410 (7%)

Query: 403 IVTSNPRGGTIW--MFENL---TVQVDLETKYNTLV-KVQGETIDHLSEGVAVFGPDGRI 456
           +  S P G  I+  +FE+     V++    +++ L  K+  + ++ L  G+ +    GR+
Sbjct: 378 LGESKPVGIMIFPILFEDECIGAVEIASLDRFSDLETKLFAQLVESL--GIILNNIKGRM 435

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           ++     + L +++            +          ++  +     +   ++  +  Q 
Sbjct: 436 RVE----QLLRESQALTEELQCQSEELQTQQEELKRSNENLEQQTEELKRSEELLQRQQE 491

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            LE  +  ++  +       + +    +  +  RA+  L ++   L    + K+ F+ ++
Sbjct: 492 ELEHFNTELIAKTRALEEQVREVEEKNDEIEHARAQ--LEQQAMQLGITSKYKSEFLANM 549

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL +++  + LL  +K G+L  KQ +Y + I  S   LL ++++ILDL+ VDAG
Sbjct: 550 SHELRTPLNSLLILSQLLSENKEGNLKPKQVEYAQTIYMSGADLLKMIDEILDLSKVDAG 609

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKIL 695
            M +N+  + L +L   V+Q+ A    +  +++    +  L  + ++D  RL QI   +L
Sbjct: 610 KMDINHEAVHLKELELFVEQNFAPVAAQRELQLHTEIEENLPDAIISDGYRLKQILRNLL 669

Query: 696 SNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGSSIPEDMCKSVFNRFV 743
           SNA  F+++GS +    +R NG+               SV++ G  I  D    +F  F 
Sbjct: 670 SNAFKFTTEGS-ITFNVSRANGEQLPGLLNPRRSYLALSVRDTGIGIASDKTDLIFEAFQ 728

Query: 744 SNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                   +  G GLGLSI      L GG +++ S     +     +P +
Sbjct: 729 QVDGTTSRKYGGTGLGLSISRELSRLLGGIITVESEQGQGSCFTLYLPEQ 778


>gi|268590725|ref|ZP_06124946.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
 gi|291313496|gb|EFE53949.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
          Length = 781

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 151/397 (38%), Gaps = 18/397 (4%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ----GETIDHLSEGVAVFGPDGR 455
           L ++         + + E L  ++    +    ++ Q       +D   + V     +  
Sbjct: 117 LEILEREKAERAHLELLEQLKQEMKYREQTQIELEQQSVLLRSFLDASPDLVYYRNENNE 176

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
               N A   L    E  L   T +       +    E+D       +  +++       
Sbjct: 177 FSGCNRAMELLTGKSEKHLVGLTPLDIYDVEIASKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 516 GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
           G       +  E   +P  +       +        ER      EAL  A   K +F+  
Sbjct: 237 G-----RKACFELRKVPFYDRVGKRHGLMGFGRDITER--KRYQEALESASREKTTFIST 289

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+ELR+PL  I+G + +L  +    L S+QS Y++ I  S+  L N+ NDI+++  ++ 
Sbjct: 290 ISHELRTPLNGIVGLSRILLDT---DLTSEQSSYLKTIHVSAVTLGNIFNDIIEMDKIER 346

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKI 694
             ++L+   I L++ +N+++      +    ++  +     L  + + D  RL QI   +
Sbjct: 347 RKVQLDNQPITLSEFVNDLENLSGLLVQPKGLKFVMDVAPALPKTVLTDGTRLRQILWNL 406

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           + NA+ F+ KG   +           F V+++G  IP+     +F  +         +  
Sbjct: 407 IGNAVKFTQKGEVKLSIWQEAENKLFFRVQDSGIGIPKGELDKIFAMYYQVTDSAGGKPA 466

Query: 753 -GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G G+GLS+        GG + + S     +T    I
Sbjct: 467 TGTGIGLSVSRRLAQNMGGDIQVESEIGQGSTFTLSI 503



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 121 FHHYIKLSKATEKL---RKEGQSFDLVAET-QNDCAIKIEGRVSGSCAFLRILSLDGIYS 176
                +LS+  +KL   RK     +   +       ++I  R     A L +L    +  
Sbjct: 81  EESRQRLSRMVDKLEVMRKRDADLNTQLQGNIEQLNLEILEREKAERAHLELLE--QLKQ 138

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E+        +L     + +   D+   LV++R++  +    N + +  T   G   +  
Sbjct: 139 EMKYREQTQIELEQQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLT---GKSEKHL 195

Query: 237 IG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV------RV 282
           +G     ++  EI  +++ +   EK F   VS           G    +++       RV
Sbjct: 196 VGLTPLDIYDVEIASKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRV 253

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTH 307
               G  G   D+++     + L  
Sbjct: 254 GKRHGLMGFGRDITERKRYQEALES 278


>gi|324117708|gb|EGC11607.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|323944868|gb|EGB40934.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
          Length = 1127

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|323177504|gb|EFZ63092.1| sensor protein evgS [Escherichia coli 1180]
          Length = 1128

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 449 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 508

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 509 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 567

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 568 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 627

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 628 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 685

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 686 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 745

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 746 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 805

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 806 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 865

Query: 789 PSK 791
           P +
Sbjct: 866 PVE 868


>gi|323162229|gb|EFZ48088.1| sensor protein evgS [Escherichia coli E128010]
          Length = 982

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|323156377|gb|EFZ42534.1| sensor protein evgS [Escherichia coli EPECa14]
          Length = 1018

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|320199944|gb|EFW74533.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli EC4100B]
          Length = 1127

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|331669116|ref|ZP_08369964.1| sensor protein EvgS [Escherichia coli TA271]
 gi|331064310|gb|EGI36221.1| sensor protein EvgS [Escherichia coli TA271]
          Length = 1147

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 468 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 527

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 528 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 586

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 587 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 646

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 647 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 704

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 705 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 764

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 765 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 824

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 825 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 884

Query: 789 PSK 791
           P +
Sbjct: 885 PVE 887


>gi|307311026|ref|ZP_07590670.1| Hpt sensor hybrid histidine kinase [Escherichia coli W]
 gi|306908532|gb|EFN39029.1| Hpt sensor hybrid histidine kinase [Escherichia coli W]
 gi|315061705|gb|ADT76032.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli W]
 gi|323377714|gb|ADX49982.1| Hpt sensor hybrid histidine kinase [Escherichia coli KO11]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|300817387|ref|ZP_07097604.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300530013|gb|EFK51075.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|300820961|ref|ZP_07101111.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|331678363|ref|ZP_08379038.1| sensor protein EvgS [Escherichia coli H591]
 gi|300526714|gb|EFK47783.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|331074823|gb|EGI46143.1| sensor protein EvgS [Escherichia coli H591]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|300918469|ref|ZP_07135064.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300414352|gb|EFJ97662.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|300903097|ref|ZP_07121034.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301304743|ref|ZP_07210850.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300404874|gb|EFJ88412.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300839974|gb|EFK67734.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315256388|gb|EFU36356.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|260845017|ref|YP_003222795.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O103:H2 str. 12009]
 gi|257760164|dbj|BAI31661.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O103:H2 str. 12009]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|260856479|ref|YP_003230370.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O26:H11 str. 11368]
 gi|260869075|ref|YP_003235477.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O111:H- str. 11128]
 gi|257755128|dbj|BAI26630.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O26:H11 str. 11368]
 gi|257765431|dbj|BAI36926.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O111:H- str. 11128]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|256017469|ref|ZP_05431334.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella sp. D9]
 gi|332278474|ref|ZP_08390887.1| sensor histidine kinase/response regulator EvgS [Shigella sp. D9]
 gi|332100826|gb|EGJ04172.1| sensor histidine kinase/response regulator EvgS [Shigella sp. D9]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|218696012|ref|YP_002403679.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli 55989]
 gi|293446742|ref|ZP_06663164.1| two-component system [Escherichia coli B088]
 gi|300948489|ref|ZP_07162586.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300956365|ref|ZP_07168659.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|218352744|emb|CAU98530.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli 55989]
 gi|291323572|gb|EFE63000.1| two-component system [Escherichia coli B088]
 gi|300316816|gb|EFJ66600.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300451998|gb|EFK15618.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|209919858|ref|YP_002293942.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli SE11]
 gi|300922025|ref|ZP_07138169.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|301328872|ref|ZP_07221910.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|209913117|dbj|BAG78191.1| two-component sensor kinase [Escherichia coli SE11]
 gi|300421596|gb|EFK04907.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300844746|gb|EFK72506.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|324016833|gb|EGB86052.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|193062425|ref|ZP_03043520.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E22]
 gi|194428587|ref|ZP_03061125.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           B171]
 gi|192932091|gb|EDV84690.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E22]
 gi|194413310|gb|EDX29594.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           B171]
          Length = 1127

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|191165496|ref|ZP_03027337.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           B7A]
 gi|190904419|gb|EDV64127.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           B7A]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|188494301|ref|ZP_03001571.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           53638]
 gi|188489500|gb|EDU64603.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           53638]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|162448620|ref|YP_001610987.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159202|emb|CAN90507.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 623

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 2/234 (0%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASST 618
           E+ ++A   +   V  VS++L+SPL  I+  T LL+    G+  + +  + VE I  ++ 
Sbjct: 375 ESAQRAIRAREELVAVVSHDLKSPLATIVMNTSLLRRKLPGADEAVEVRRPVERIQKAAD 434

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  L+ D+LDLA +D G + +      +  LL +  + +  +  E ++R++   +  + 
Sbjct: 435 RMNRLIRDLLDLAKLDGGHISIQPVPHDVAGLLGDAIELLREEAAEKSLRLEQSVELGVD 494

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
             + DR+R+LQ+ + ++ NA+ F+S G  V ++A     +   SV++ G  IPED    +
Sbjct: 495 RALCDRERILQVIANLVGNAIKFTSAGGEVAVRAEPWGREVRLSVRDTGPGIPEDQRARI 554

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F R+         +G GLGLSI ++ + +HGG + + S     +T    +P  E
Sbjct: 555 FERYWQAKE-TAHKGTGLGLSIAKALVEVHGGRIWVESKVGEGSTFFFTLPMVE 607


>gi|157157004|ref|YP_001463705.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli E24377A]
 gi|218554912|ref|YP_002387825.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli IAI1]
 gi|309796819|ref|ZP_07691222.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|157079034|gb|ABV18742.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E24377A]
 gi|218361680|emb|CAQ99277.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli IAI1]
 gi|308119578|gb|EFO56840.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|157374787|ref|YP_001473387.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157317161|gb|ABV36259.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1374

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            ++   + E ++ Q  L + ++  LE     L   Q  +   N      A+  + EK + 
Sbjct: 600 KVLKESEAELQAQQEELRVTNEE-LEERTKALEEQQVEMQGKND-QLHLAQNVVEEKAKE 657

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  A + K+ F+ ++S+ELR+PL +I+  + LL ++K G+LN KQ +  + I++S + LL
Sbjct: 658 LASASKYKSEFLANMSHELRTPLNSILILSQLLASNKAGNLNDKQIESAKAINSSGSDLL 717

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SF 680
           +L+N++LDL+ V+AG ++L    +   ++  ++ +       +  +   +     L    
Sbjct: 718 SLINEVLDLSKVEAGKVELQIEDVSFQEIEQDINRLYQDIAVDKGLYFDIALAADLPNEI 777

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFSVKNNGS 728
             D  RL QI   +L+NA  F+ +G+ V L   +   +              F+VK++G 
Sbjct: 778 KTDSLRLQQILRNLLTNAFKFTHEGA-VTLSITQPTNEVAARMQQPKQSLVAFTVKDDGI 836

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ++    +F  F        R   G GLGLSI +   +L GG + + S +        
Sbjct: 837 GIKKEKQLGIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGGTILLKSDEGKGCAFTV 896

Query: 787 RIPSK 791
            +P +
Sbjct: 897 VLPLE 901


>gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 1131

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 3/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA      + EAL + D  K +F  +VS+E R+PLT ++G  + L      ++  +    
Sbjct: 349 RAYDEERRRAEALAELDRAKTTFYSNVSHEFRTPLTLMLGPLEELLGKSERAIRPENHHL 408

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           VE    + T LL LVN +LD + ++AG M +++    L     E+     +   +  +R+
Sbjct: 409 VEVAYRNGTRLLKLVNTLLDFSRIEAGRMNVSFQATDLVAFTAELTALFRSATDKAGLRL 468

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++ SD        +R+   +I   +LSNA  F+ +G  + +           SV++ G  
Sbjct: 469 EIESDALPHRVYVNREMWEKIVLNLLSNAFKFTFEGG-ITIALRDGGDGVAVSVRDTGVG 527

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    VF RF  V  A      G G+GLS+V+  +  HGG + + S     TT +  
Sbjct: 528 IPPNELPRVFERFHRVEGAKGRSFEGSGIGLSLVQELVKTHGGTIEVESEVGKGTTFHIH 587

Query: 788 IP 789
           +P
Sbjct: 588 LP 589



 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 126/380 (33%), Gaps = 29/380 (7%)

Query: 420  TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG---RIKLSNPAFRSLWKTEENRLSP 476
            T + + E +           +   S+ V     D    R         ++ +  +  L  
Sbjct: 770  TFRRETEQRIRESEGRFRALVSATSDVVYRMSADWSQLRQLDGRDYLANVERPPQTWLQT 829

Query: 477  GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              H  +     S  +       +F       +       G+L       +          
Sbjct: 830  YIHPDDQPTVLSAIHEAIRDKKIFQ-----LEHRMLRADGSLGWTFSRAVPMLDNKGEIV 884

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +      ++T    AE AL    +               +++E+ +PL  I     L   
Sbjct: 885  EWFGAATDITPRKNAEDALLRSEKLASVG-----RMAATIAHEINNPLEAITN--TLFLA 937

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                 L     +Y+E        + ++    L     ++         I LN +++    
Sbjct: 938  LHAQDLPESAREYLEMADGELRRVAHITRQALGFYR-ESNA----PRQIALNAVMDSTLD 992

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAAR 714
             +  ++   N+ ++   DG + +  A    + Q+FS +L N++D   +G    V +   R
Sbjct: 993  LLKNRIRTKNVTVEKQWDGDVHA-EAVAGEMRQVFSNLLQNSLDAVDEGGAIKVRISTIR 1051

Query: 715  DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +      ++ ++G  I  +  + +F  F +        G GLGL +    +  HGG + +
Sbjct: 1052 NGSAVRVTIADSGKGIEANFRERIFEPFFTTKGAV---GTGLGLWVTRQIVEKHGGRIRV 1108

Query: 775  ---SSSDEGVTTINCRIPSK 791
               +S D+  T+ +  +P +
Sbjct: 1109 HSLTSGDQRGTSFSIVLPVQ 1128


>gi|83814296|ref|YP_444970.1| two-component hybrid sensor and regulator [Salinibacter ruber DSM
           13855]
 gi|83755690|gb|ABC43803.1| two-component hybrid sensor and regulator [Salinibacter ruber DSM
           13855]
          Length = 912

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 106/652 (16%), Positives = 237/652 (36%), Gaps = 71/652 (10%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSS 256
            + +++   ++       I++AN ++ +    E     +A   S        ++ +    
Sbjct: 272 SITENVSEGIYRSTPEEGIVYANSAFVEMFGYESRDELRAADPSTFYADPAEREALYRQE 331

Query: 257 ALEKNFCETVSTLEHGNNKSY----KIVRVLNSFGEA----GIAIDVSKEITVNDQLTHT 308
             +          +  +  ++       +V    G      G   D+++      +L  T
Sbjct: 332 DEQGGLDGVEVQFQRNDGSTFTGLLSTQQVDAPDGNQVYNDGAVTDITERKGRERRLEQT 391

Query: 309 YEILHNLTVAIAIFDQNRYLQFH-------NRSFVELWEIDLAFLATNPSNDELL----- 356
             +  N   A+ + D  +            N  +   +      +      +        
Sbjct: 392 ETLFQNAQDALFLIDVRQKDSAASFTYRRVNPVYERKFGYTEEDVRGRSPEEVFGAETAE 451

Query: 357 ---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
              E L++  +  E L+++  ++       +    +    + +G+   ++ T        
Sbjct: 452 FLEERLQACKRRREPLDYE--EKIPLEEGMAYFRTRLAPVIVDGEVKQIVGTP------- 502

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD---GRI-----KLSNPAFRS 465
               ++T +   E    +  +         S  ++V   D   GRI     ++ +   R 
Sbjct: 503 ---RDITQRKRREQMLKSRRRKIEALYRATSGLLSVETRDAVPGRIAEVLQEVFDFPLRH 559

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLE--LLS 522
           +   E   L P   +    +       +    DL A   I + +       G LE  L  
Sbjct: 560 VGLVEGEMLVPKETVGEDLSRMPEPKAQPLSEDLVATRAIQAGEAVVVESTGGLENDLDY 619

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVT---------------------DSVRAERALTEKNEA 561
            ++   + IP+     ++                             +  E  L +  E 
Sbjct: 620 GTLSTLAGIPIGGHGAVVVGKEAGTFDALDLRLLEVLGGYGTLVLGRLEREERLVQAREE 679

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLGSLNSKQSQYVEYISASSTIL 620
             +A ++K++ + ++S+E+R+PL ++IG  DLL+   +   L  + +   E I  S   L
Sbjct: 680 AEEAAQLKSAMLANMSHEVRTPLMSMIGSADLLREDLEEAGLEGEPADMAEQIFRSGQRL 739

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              ++ +L+L+ +++G   L+  +  L+ ++ EV Q +  + HE  I+++V S G     
Sbjct: 740 RETLDSVLELSRLESGAYTLDDDSAYLDVVVREVAQELNLRAHEKGIQLEVGSPGASVEA 799

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVF 739
             D   + +I   ++ NA+ F+ +G  V ++    D    + +V++ G  I E+  + +F
Sbjct: 800 GLDETAVRRIVRNLVENAIKFTPEGGKVQVRVEPEDEETALLAVEDTGVGIAEEAREDIF 859

Query: 740 NRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + F   +     +  G GLGLSIV+    + GG + + S     T    R+P
Sbjct: 860 DAFKQESEGLGREYEGSGLGLSIVDRLTTMLGGTIEVESEKGTGTRFAVRLP 911



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 12/155 (7%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           T AI   D        N     L+ +    L    +  ++    +             ++
Sbjct: 160 TDAIVEVDAEWCFTLVNDQAEALYGMKEEHLLGR-TLWDVFPRTKGTR----------FE 208

Query: 376 ENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVK 434
           E    V +S E  +        G    + V  NP GG  + F+++T + + E +     +
Sbjct: 209 EEYRRVMRSREPVRFEERFGGMGTWFDIQVYPNPDGGLAFYFDDVTKRKEREEQLREREE 268

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           +     +++SEG+    P+  I  +N AF  ++  
Sbjct: 269 LLRSITENVSEGIYRSTPEEGIVYANSAFVEMFGY 303



 Score = 38.0 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 77/228 (33%), Gaps = 30/228 (13%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D  + + F      EL  +        P +D   E       +PE       +    +V 
Sbjct: 49  DGEQSIAFIGDGATELLGL-------APESDGFYERFVEH--IPESHRGAFLRSVEEAVT 99

Query: 383 -KSSETHKDTWHLPNGQTLHVIVTSNPR---GGTIW--MFENLTVQVDLETKYNTLVKVQ 436
            +S   H+  +  P+G+ + ++ ++ P     G ++  +  N+T +++ E +   +++  
Sbjct: 100 TRSHWRHEVPFDRPDGERIWLLGSAEPDPQEKGALFRGLLLNITERIEEERRREQVIRRV 159

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
                  ++ +     +    L N    +L+  +E  L   T       T    + E   
Sbjct: 160 -------TDAIVEVDAEWCFTLVNDQAEALYGMKEEHLLGRTLWDVFPRTKGTRFEEEYR 212

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
             + +     F++    +         +  +  + P P+      F +
Sbjct: 213 RVMRSREPVRFEERFGGM--------GTWFDIQVYPNPDGGLAFYFDD 252


>gi|295681253|ref|YP_003609827.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. CCGE1002]
 gi|295441148|gb|ADG20316.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. CCGE1002]
          Length = 1360

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/513 (17%), Positives = 195/513 (38%), Gaps = 31/513 (6%)

Query: 296  SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            ++  +  ++     + LHNL     +     D+N  ++ +     +++ I  +       
Sbjct: 722  AELKSKVEETGKINDDLHNLIAANDIGTIFVDRNICIKRYTPRATDVFSIIPS------- 774

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-----HVIVTS 406
                 +  RS   +  +L +    ++    + S    +      +G+           T 
Sbjct: 775  -----DIGRSLLDITHRLEYDKLADDAAEAFDSLRLIERELKSNDGRWYLARFVPYRTTE 829

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRS 465
            +   G +  F ++T +   E +     +      +   +  +  F  +G I   N     
Sbjct: 830  DRIDGAVLSFIDITGRRQAEDRLREGERRMRIVAEGTKDYAIITFDENGVINSWNAGAER 889

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSDS 524
            ++   E  +  G     +     R  N +      A +    ++ER  L+       +  
Sbjct: 890  IFGYSEAEM-IGQSADILYTDEDRAANVAKREFAEARLNGRAEEERWHLRKDGTRFFASG 948

Query: 525  VLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            VL     P  +      + +  F +   S R     T +  + R+A   ++ F+  VS+E
Sbjct: 949  VLSRLDEPGISGFAKITRDLGEFASDATSGRGTHVETLRAASEREAQRRRDEFLAVVSHE 1008

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            L+ PL  I    +L+  +     N   S+  + I  +      +++D+LD++ V  G + 
Sbjct: 1009 LKHPLNLISASAELIARAPETRQNLNVSRATDTIRRTVIGQAQIIDDLLDISRVRTGKLS 1068

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
            +  + + + +++  V  ++     +  I + V          AD  R+ QI   ++SNA+
Sbjct: 1069 VVRTVVDMREIVQRVCSAVQDDAAQRGITLSVEVTDAPVIIHADLTRIEQIVWNLISNAL 1128

Query: 700  DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGL 758
             F+ +GS  +     D+ + +  V + G+ I   +   +F  F  +     +R G+G+GL
Sbjct: 1129 KFTQRGSIQVSLQVNDHAEAVLRVSDTGTGIEASLLPHIFEMFQQSRDPGSRRGGLGIGL 1188

Query: 759  SIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            ++V   +NLHGG V   S       T    +P+
Sbjct: 1189 ALVRDLVNLHGGAVRAESDGVGRGATFTVTLPT 1221


>gi|260575777|ref|ZP_05843773.1| putative PAS/PAC sensor protein [Rhodobacter sp. SW2]
 gi|259021930|gb|EEW25230.1| putative PAS/PAC sensor protein [Rhodobacter sp. SW2]
          Length = 526

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 198/519 (38%), Gaps = 29/519 (5%)

Query: 33  MLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSK--YHSLLTENNCLTIVWDGKD 90
           +L   +I   LL      +     +  +  +     L +  + S L +   L       D
Sbjct: 6   VLGLVVIAAALLSAIGGLMVLSALQAKAKAATGSVFLDQGDHASFLFDGETLI------D 59

Query: 91  ETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQND 150
            TPE    L            L +F   L            + L  EGQ      +T + 
Sbjct: 60  ATPEARALLSLSQIKGSPWARLAAF---LSPRFPG-FEARFQGLEGEGQVMLASTDTASQ 115

Query: 151 CAI-KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHR 209
             + + E R  G    + +L  D          L  +   + ++  +        ++W  
Sbjct: 116 PLLLRAELR--GGLTRITLLDPDTERRAPGADLLTQRAQEDELAQLRGTISQAPLMIWRE 173

Query: 210 DQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
             +GD+ WAN +Y      +    Q       +LF+     + ++      +        
Sbjct: 174 AASGDVTWANATYLDQASQKLEPGQDLSWPLPRLFERTAVAQGVNGQRQRLDQP------ 227

Query: 270 EHGNNKSYKIVRVLNSFGEAGIAID----VSKEITVNDQLTHTYEILHNLTVAIAIFDQN 325
             G    Y ++      G     +     V  E ++ D +    +   +L + +AIFD+ 
Sbjct: 228 -TGPAHWYDLIGFAEGEGRLMFGLPADAAVQAETSLRDFMQTLTKTFAHLPIGLAIFDRQ 286

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
           R LQ  N + ++L  +   FL+  P+    L+ +R  N +PE  +++ W++ +  + K++
Sbjct: 287 RQLQLFNPALLDLSGLQPDFLSLRPTLFAFLDAMRDRNMIPEPKDYRFWRKQMTELEKAA 346

Query: 386 ET--HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL 443
            +  +++TW LP+GQT  VI   +P G    MFE+++ ++    +Y   +++    +D +
Sbjct: 347 SSGLYEETWSLPSGQTYRVIGRPHPNGALALMFEDISTEMSRTRRYRADLELGQAVVDAM 406

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            +G+AVF   G + +SN A+  LW  +       + +  + A        S  W      
Sbjct: 407 DQGLAVFSESGVLVMSNTAYTELWGHDPASTLGESGVATLCAHWRENSAPSPIWSEVEDF 466

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           I +   ERK+  G   L    +L+    P+    T+ TF
Sbjct: 467 IATM-GERKAWGGEARLNDGRLLDCRFTPIQGGSTLATF 504


>gi|157285953|gb|ABV31705.1| histidine kinase [Botryotinia fuckeliana]
          Length = 1315

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 15/240 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  +   + 
Sbjct: 718 REAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNIVHNLAN 774

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +    D  + 
Sbjct: 775 SLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNALKTLAVKANEKFLDLTYRVDSSVP 834

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              V D  RL Q+   ++ NA+ F+  G  V L   +   D          F V + G  
Sbjct: 835 DHVVGDSFRLRQVILNLVGNAIKFTEHGE-VSLTIQKAEQDHCAPNEYAVEFCVSDTGIG 893

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F+ F        R   G GLGLSI +  +NL  G V + S     ++    
Sbjct: 894 IQADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|157161843|ref|YP_001459161.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli HS]
 gi|157067523|gb|ABV06778.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           HS]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TVDYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|329121387|ref|ZP_08250012.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus
           DSM 19965]
 gi|327469677|gb|EGF15144.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus
           DSM 19965]
          Length = 650

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 158/384 (41%), Gaps = 38/384 (9%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGE----TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           +++ +  Q +   KY   ++         ++ + +G+ +      I   N     ++   
Sbjct: 213 LYKRVAEQRNQIEKYLEDMEEDRNNIRIVMNTIYDGIILLNDKKEIIDYNRRAEKIFNPS 272

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVL-EY 528
           E+        R I++    +       D   A+  ++ D  R+    T+      V+   
Sbjct: 273 ED-----KRFRKISSMYCDH-------DWLRAVDRAYRDANRQKYTMTIADKPFKVIMTR 320

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           +I+P      ++   ++T    AE+              ++  F  +VS+EL++PLT I 
Sbjct: 321 TILPEEQHGVLIVLRDMTAEHIAEK--------------MRREFSANVSHELKTPLTTIS 366

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF +++              +   I   S  +L+L++ I+ L+ ++     +++  + ++
Sbjct: 367 GFAEMIAKGMCKD-TEDIKNFSNKIHQESRRMLSLIDTIMHLSKIEEKETTISWKLVSVD 425

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            +L  V   I ++  + +++I +  D +      +   L ++F  +L NA+ ++ +G  +
Sbjct: 426 SVLKYVADLITSQATKKDLKINL--DIEPVYMYGNAALLSELFMNLLDNAVKYNVEGGNI 483

Query: 709 ILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFI 765
            +   R     +  ++ + G  IPE+    VF RF            G GLGLSI +  I
Sbjct: 484 TVHIKRVKEKLMKITISDTGVGIPEEKQNRVFERFFRVEESRNKATGGSGLGLSICKHII 543

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             H G + ISS +   TT+   +P
Sbjct: 544 ERHNGKIEISSIEGKGTTVTAELP 567


>gi|262383009|ref|ZP_06076146.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
 gi|262295887|gb|EEY83818.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
          Length = 1354

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 120/271 (44%), Gaps = 12/271 (4%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTN 586
            Y II L  A  ++ F+      + E+   +       + DE+K  F  +VS+E R+PLT 
Sbjct: 796  YIIIGLLFAYGIMWFILRIQQKKMEQEKEKAIVRKQHEVDEMKLRFFTNVSHEFRTPLTL 855

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            I+   + L  ++    N++  Q +  I  ++  LL LVN +LD   +D     L  ST  
Sbjct: 856  ILTPLEKLMKTE---ENAETKQILRLIYRNADRLLKLVNQLLDFRKIDVQGDTLVLSTGD 912

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            +   + +V  S      + +IR    S         D  ++ +I S +LSNA  F+ +G 
Sbjct: 913  IVPFVRDVAYSFKELSEQKHIRFSFSSVFTSLPMRFDTDKVFKIVSNLLSNAFKFTPEGG 972

Query: 707  TVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGL 758
             + +  +           +  V ++G  IP D  +++F+RF   +   +     G G+GL
Sbjct: 973  MITVTLSLLPDKEGRNKLLIEVSDSGIGIPADKQEAIFDRFYQVSSSDKGNPVMGTGIGL 1032

Query: 759  SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +   F+ +H G ++I S     +T    +P
Sbjct: 1033 HLCREFVRMHQGSIAIKSQPGVGSTFTVTLP 1063


>gi|91781778|ref|YP_556984.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
            LB400]
 gi|91685732|gb|ABE28932.1| amino acid-binding domain sensor hybrid histidine kinase / PAS/PAC
            sensor hybrid histidine kinase [Burkholderia xenovorans
            LB400]
          Length = 1490

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/516 (17%), Positives = 187/516 (36%), Gaps = 42/516 (8%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND---- 353
            E+ +  QL     ++  +   +   D +      N ++ +   +    +    + D    
Sbjct: 570  ELELELQLNFQETMMKMVPYPLVAIDLDGRYIAVNEAYEQACGMSREAVIGRNTVDVQTW 629

Query: 354  ------ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
                   L +  R      E    +   E      +            +GQ   V+ T  
Sbjct: 630  GEANSRILTDMTREMLNGRETAQLELQFERGAGNVRHGLFWASVCRDGDGQPACVLGT-- 687

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP--DG--RIKLSNPAF 463
                      ++T     E +     +   +    L   V       DG           
Sbjct: 688  --------VVDITDIRRAEMRARETERRLFDVTRSLPAVVFQLRRTSDGAYSFPYIGGDT 739

Query: 464  RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
            R L   ++  L+   H+ +    C             +A+  +  +     +G  E+   
Sbjct: 740  RHLLGGKDGSLNRSDHV-DFQRVCEEDRAFVLAELERSALCETPVNMEFRFEGDEEI--- 795

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYE 579
                  ++P   A   + +         E A    L    +    A   K+ F   +S+E
Sbjct: 796  KWARAELVPRREADDSVVWSGYWVDASVEHARSDELARARDLAEAAARAKDDFFAMMSHE 855

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            +R+P+  ++G  ++L+ +    LN+ Q + +  I  S+  LL +++D+LD + ++AG + 
Sbjct: 856  IRTPMNGVLGLVEVLERT---PLNTDQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLT 912

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNA 698
            +   +I + +L++     +A + HE  ++++V     +  +   D  RL QI   +L NA
Sbjct: 913  IEAESIDIRELVDNAVGLLAGRAHEKGLKVRVDIAPDVAATLRGDSVRLRQILFNLLGNA 972

Query: 699  MDFSSKGST-VILKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
            + F+ +G   V +              +V++ G  I  ++   +F  FV       RR  
Sbjct: 973  IKFTPQGEVDVRVSVFAQADGVQTLEMTVEDTGIGIAPEVQNRLFEPFVQAESSTTRRFG 1032

Query: 753  GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            G GLGL+I    I+L GG +++ S     T +  R+
Sbjct: 1033 GTGLGLTICRKLIDLMGGSLALHSEPGSGTRMTVRL 1068



 Score = 38.0 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 50/180 (27%), Gaps = 20/180 (11%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            G    + + +   +  E+        +L   ++  + +   + + +   D  G  +  N
Sbjct: 545 IGVALLITLRAYLLLQREVRLRKKTELELELQLNFQETMMKMVPYPLVAIDLDGRYIAVN 604

Query: 220 ISYKKNTETEGIVFQKAIGESR-----------KLFKEEIKKRMISSSALEKNFCETVST 268
            +Y++     G+  +  IG +            ++  +  ++ +      +         
Sbjct: 605 EAYEQAC---GMSREAVIGRNTVDVQTWGEANSRILTDMTREMLNGRETAQLELQFERGA 661

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
               +   +  V        A +   V     +        E    L      FD  R L
Sbjct: 662 GNVRHGLFWASVCRDGDGQPACVLGTVVDITDIRRAEMRARETERRL------FDVTRSL 715


>gi|330501197|ref|YP_004378066.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328915483|gb|AEB56314.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 749

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 128/268 (47%), Gaps = 5/268 (1%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +E + I    +Q  L           E  L  +    ++A   ++  V  VS++LR+P+T
Sbjct: 478 VEMAGISTKWSQGDLFAAKDLRRSALEHDLARQVLREQEAVRARDELVAVVSHDLRNPMT 537

Query: 586 NIIGFTDLLK---TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            I     +++   +S     + + +  ++ +  ++  +  L+ D+LD + +DAG   +  
Sbjct: 538 VISMLCSMMQKTFSSDGPHTSRRIATALDTMQQAAGRMNTLLEDLLDTSKIDAGRYTITP 597

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + +  +  E +  +A    + +I I   +D  L    AD +RL Q+ S ++ NA+ F+
Sbjct: 598 QKLDVGHMFEEAQSLLAPLALDKDISISFEADPDL-RIHADPERLFQVLSNLIGNAIKFT 656

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +  TV ++A    GD +FSV+++G  IPE+    VF+R+ +    G   G GLGL I +
Sbjct: 657 PRRGTVGVRAKSVGGDIVFSVRDSGEGIPEEHLPHVFDRYWTAKD-GNPTGTGLGLYITQ 715

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
             +  HGGH+ + S     +     +P+
Sbjct: 716 GIVEAHGGHIVVESELGKGSEFQFTVPA 743


>gi|301301240|ref|ZP_07207395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851116|gb|EFK78845.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 358

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 160/367 (43%), Gaps = 28/367 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              N   +     ++++  G+ V     R+ +SN   +  +  +    +           
Sbjct: 11  KNMNKRKREYLSLLEYIDIGILVIDYKDRLTMSNELGKDFFDFDNEWKNQDY-------- 62

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
              Y    D   L   +  + +D++K +   ++ +   ++E S I +P            
Sbjct: 63  -QNYIYNLDVRKLIEQVKLTKEDKKKQIVLKVDTVQ-KIVEVSAIYIP-----------I 109

Query: 547 DSVRAERALTEKNEALRKADEIKN-SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           DS R    L  ++   +K  E K   FV ++S+E+++P+T I GF++ L    L      
Sbjct: 110 DSKRYLIMLMLRDLTAQKEVEKKQLDFVGNLSHEIKTPITAITGFSETLLDGALND-KEV 168

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             Q++E I   ST L NLV+D++ ++ +      LN   + +  L+ +  Q  + ++ + 
Sbjct: 169 SKQFIEIIHDESTKLSNLVDDMITISRL-NEHENLNIELVNIFKLVKDTLQLFSHEIEKK 227

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVK 724
            + +++  D +L S   D+ +L  I + ++ NA+ ++ +   + +K   D   +++F + 
Sbjct: 228 RLNVRIEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNEWVFVIS 286

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I ++  + +F RF        +   G GLGL++V+  ++   G + + S     T
Sbjct: 287 DTGIGISDEDKERIFERFYRVDKSHSKAVGGTGLGLAVVKESVDALSGRIKVKSQINKGT 346

Query: 783 TINCRIP 789
           T    +P
Sbjct: 347 TFYVILP 353


>gi|260171277|ref|ZP_05757689.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|315919587|ref|ZP_07915827.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|313693462|gb|EFS30297.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
          Length = 1353

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 117/267 (43%), Gaps = 6/267 (2%)

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRS 582
            +++ +  I +     +  F  +  S+ AE  +     E   + +++K  F  ++S+ELR+
Sbjct: 790  AIVLFLAIFIGFITFVFRFFWMRKSMEAELEIERRDKEHQEEINQMKMRFFINISHELRT 849

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PLT I+     +           Q +Y++    ++  LL+LVN ++D    + G+ +L  
Sbjct: 850  PLTLILAPLQEIINKISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKV 906

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                 + L+ +             I   + S+ +    + D   L  I + +LSNA  ++
Sbjct: 907  KKENAHQLIQDNFLFYDKLARHKKITYTLHSELEDKEELFDPNYLELIVNNLLSNAFKYT 966

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
              G ++ +    +N   +  V + G  IP +    +F RF       +  G G+GLS+V+
Sbjct: 967  ESGQSITVTLKEENNWLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQ 1024

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
              + LH G + + S +   +T +  +P
Sbjct: 1025 RLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|228981370|ref|ZP_04141670.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407]
 gi|228778570|gb|EEM26837.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407]
          Length = 485

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ + P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 204 LKGATEKIKEGNLDFQM-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQTQYEENRKELI 260

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 261 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 319

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + E  I + +          AD +++ ++ S 
Sbjct: 320 DLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVNLQLHSSPLYVTADCEKINRVISN 379

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 380 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 439

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 440 TGGSGLGLAIAKQIVEEHGGGIWAESELGKGTSIFFSL 477


>gi|17226812|gb|AAL37947.1|AF396827_1 two-component osmosensing histidine-kinase [Botryotinia fuckeliana]
          Length = 1315

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 15/240 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  +   + 
Sbjct: 718 REAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNIVHNLAN 774

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +    D  + 
Sbjct: 775 SLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNALKTLAVKANEKFLDLTYRVDSSVP 834

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              V D  RL Q+   ++ NA+ F+  G  V L   +   D          F V + G  
Sbjct: 835 DHVVGDSFRLRQVILNLVGNAIKFTEHGE-VSLTIQKAEQDHCAPNEYAVEFCVSDTGIG 893

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F+ F        R   G GLGLSI +  +NL  G V + S     ++    
Sbjct: 894 IQADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|302784310|ref|XP_002973927.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
 gi|300158259|gb|EFJ24882.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
          Length = 320

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 123/269 (45%), Gaps = 25/269 (9%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                 V+A   L    +A   A + K+ F+ ++S+E+R+P+  I+G + L+  +   SL
Sbjct: 44  QRTHQLVKANEELQTSKQAAELASQAKSDFLANMSHEIRTPIHGILGMSALVLGT---SL 100

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +Q + +  +S  + +LL+++N ILDL  ++AG  ++   +  L+ +L      +  + 
Sbjct: 101 TDEQKENMTTVSECAELLLHIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHILQPRA 160

Query: 663 HENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR------ 714
             +N+R+    D  +  F V D  +L Q    ++ NA+ F+ +G   V +   R      
Sbjct: 161 QAHNLRLSYEIDSAVPEFLVGDSGKLRQCLLNLVGNALKFTPEGEVRVEVSVHRFGMQDD 220

Query: 715 ------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSI 760
                       D  + +  + ++G  I ++  K VF  F        R   G GLGL +
Sbjct: 221 SVLSRLNASQWSDMSEMMLEISDSGIGISKNKLKDVFKPFTQADASISRLYGGTGLGLCV 280

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
           V+ F+ L GGH+ + S     ++    +P
Sbjct: 281 VQRFVELMGGHILVESEYGKGSSFYIVLP 309


>gi|228941850|ref|ZP_04104397.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974775|ref|ZP_04135341.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228785178|gb|EEM33191.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818062|gb|EEM64140.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 484

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ + P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQM-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + E  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVNLQLHSSPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGGIWAESELGKGTSIFFSL 476


>gi|153939075|ref|YP_001392896.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152934971|gb|ABS40469.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295320873|gb|ADG01251.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
 gi|322807867|emb|CBZ05442.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 469

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++    
Sbjct: 235 NSMAESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVP--EEKQNYYLKLTYE 292

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V  + 
Sbjct: 293 EIQRLTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLED 352

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  
Sbjct: 353 DKVYVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDI 412

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K +++RF         +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 413 KHIWDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|148381482|ref|YP_001256023.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|153933607|ref|YP_001385857.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153934677|ref|YP_001389264.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|148290966|emb|CAL85102.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929651|gb|ABS35151.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152930591|gb|ABS36090.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 469

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++    
Sbjct: 235 NSMAESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVP--EEKQNYYLKLTYE 292

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V  + 
Sbjct: 293 EIQRLTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLED 352

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  
Sbjct: 353 DKVYVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDI 412

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K +++RF         +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 413 KHIWDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|83646921|ref|YP_435356.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634964|gb|ABC30931.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 433

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 3/228 (1%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D I+  +V  VS+ELR+PLT I G   LL++ +      +++  ++    ++  L+ L
Sbjct: 199 RLDHIRREWVAVVSHELRTPLTAIQGSLGLLQSGRFDHNPDQKAHMLQMACNNTVRLVKL 258

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VN++LD+  +++G + L  +++   +L+ E   +IA      N+ ++           AD
Sbjct: 259 VNEVLDIERIESGRLTLELTSLNPRELIQEAVDTIAPAASLKNVSLRYQPQDATP-IKAD 317

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             RLLQ+   +LSNA+ FS  G  + +K           V + G  IP+ + K +F RF 
Sbjct: 318 HDRLLQVLQNLLSNALKFSPSGGVIEVKLKDKPEQLNIDVIDQGPGIPQQLTKRLFTRFA 377

Query: 744 SN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               A      G GLGL I ++ I  H G +   +  EG       +P
Sbjct: 378 QATTAANRSTGGSGLGLYISKAIIEQHQGRIGFENQPEGGCRFFVELP 425


>gi|91974887|ref|YP_567546.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91681343|gb|ABE37645.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 650

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 7/241 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +        K+  +   S+E+R+PL  IIG + LL  +   +L  +Q+ YV  +
Sbjct: 119 ELLTLRDDADATTRAKSRLLAMASHEIRTPLNGIIGMSGLLLDT---TLTPEQATYVRAV 175

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LL+L++++LD + +DAG ++L++    L  L+ ++ + +A +     I I    
Sbjct: 176 KTSGDALLSLIDELLDYSKIDAGKIELDHRPFALAALIEDIAELLAPRAQARAIEIAAYV 235

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL-KAARDNGDFIFSVKNNGSSIP 731
           D +L +  + D  RL Q+   +  NA+ F+S G   ++ +    +G+    +++ G  I 
Sbjct: 236 DERLPAQVIGDAARLRQVLLNLAGNAIKFTSSGGVALIAEPGERDGEIDLLIRDTGIGIA 295

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    VF  F            G GLGLSI E  ++  GG + + S     TT    IP
Sbjct: 296 PEAQARVFREFEQADDGIARNYGGTGLGLSISERIVSGMGGRIVLHSRPGIGTTFTVSIP 355

Query: 790 S 790
            
Sbjct: 356 L 356


>gi|312111458|ref|YP_003989774.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311216559|gb|ADP75163.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 442

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 106/225 (47%), Gaps = 3/225 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           + +  FV + S+ELR+PL+      ++++  +   L     Q  + +      +  L+ND
Sbjct: 215 QRQKEFVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVFDDMKDELRRMTKLIND 274

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +L LA  DA  ++L     +L  +++E+ +   +   + +I+        + +   D++R
Sbjct: 275 LLWLARSDANAIELTKEWFLLPPVIDELIRKCRSLAEQKHIKFVTNIQKDM-AIYGDKER 333

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++Q+   +L NA+ ++++   + +   RD  +    + + G  IP +    +F RF    
Sbjct: 334 IIQLIFILLDNAVKYNTENGQIKIAVERDRKNVNIEISDTGIGIPVEQQALIFERFYRAD 393

Query: 747 HRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               R+  G G+GLSI +  ++ HGG + + S +   +     +P
Sbjct: 394 PSRSRKQQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438


>gi|46201637|ref|ZP_00054637.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 968

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 123/249 (49%), Gaps = 13/249 (5%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +ALT   E+   A+  K++F+  +S+E+R+P+  +IG  +LL  ++   L+S Q   V
Sbjct: 438 AIQALTIAKESAEAANVAKSAFLAAMSHEIRTPMNGVIGMIELLDHTE---LDSDQRDLV 494

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                S   LL +++D+LD + ++AG ++L    + L+ +++ V Q+I+      ++ I 
Sbjct: 495 STTRDSGLALLRILDDVLDFSKIEAGRLELEQEPVRLDRMVDSVVQTISPAAAAKSLSIS 554

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVK- 724
              D  L   V AD  RL QI   +  NA+ F+++G  V +   R    + G  + S++ 
Sbjct: 555 TFVDPGLPPLVLADPVRLRQILFNLAGNAVKFTAQG-LVAIHVGRCGTDEQGRVMVSIRV 613

Query: 725 -NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  I + +   +F  F        RR  G GLGLSI    ++L  G     S     
Sbjct: 614 VDTGIGIEDALRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPNVG 673

Query: 782 TTINCRIPS 790
           ++  CR+P 
Sbjct: 674 SSFWCRLPL 682


>gi|300864283|ref|ZP_07109163.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300337748|emb|CBN54309.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 942

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            LTE  +    A++ K  F+ ++S+ELR+PL  I+G+  +L+ SK  ++  K+ + ++ +
Sbjct: 449 QLTEAKKNADAANQAKTEFLANMSHELRTPLNGILGYAQILQRSK--TMAPKELEGIDIM 506

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
               + LL L+NDILDLA ++A  ++L          L  V +    +  + +I      
Sbjct: 507 HQCGSHLLTLINDILDLAKIEAQKLELYPKDFHFPSFLQGVAEISRIRAEQKSITFVYQP 566

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNG----------- 717
             +L +   AD +RL Q+   +L NA+ F+  G+       L+   + G           
Sbjct: 567 SSELATGIHADEKRLRQVLLNLLGNAIKFTDSGAVTFKVEYLEVVTNEGVQNNKQKPLSR 626

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                F +++ G  +  D    +F  F      + Q  G GLGL+I +  + + G  + +
Sbjct: 627 IHKIRFQIEDTGVGMTPDQLDKIFLPFEQVGNTKRQAEGTGLGLAISQKILQMMGSKIQV 686

Query: 775 SSSDEGVTTINCRI 788
            S     +     +
Sbjct: 687 KSQLGAGSVFWLDL 700


>gi|197117530|ref|YP_002137957.1| PAS/PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197086890|gb|ACH38161.1| sensor histidine kinase, PAS and PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 520

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 178/486 (36%), Gaps = 21/486 (4%)

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFLRSANKLPEQLNWKTWKE 376
           A+A+ D    +   N    ++ +   + +     S     E LRS     E    ++   
Sbjct: 37  AVALLDPQGNISSWNAGAEQITKYRGSEVIGKHFSLLHPKEELRSGAPERELAIARSLGS 96

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
                ++  +     W       L+    +    G   +  + T +   +        + 
Sbjct: 97  LDLQGWRLKKDGSRFWAAITLTALYDQGENLA--GFALIAHDNTEKRASDEALVKSRNML 154

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
               +   +G+ V   +G I+ +N      +      +  G  I  +       ++    
Sbjct: 155 ERLFETAPDGIVVVDDNGVIRRTNQQAEITFGYMREEML-GQRIELLVPERYHKHHRQHR 213

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--- 553
            + FA            L G  +   +  ++  + P+        F  + D     +   
Sbjct: 214 RNYFADPRARKMGIGLELYGRHKDGHEIPVDIMLNPIETPDGTWVFAVIRDITSQRQGEA 273

Query: 554 -------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                  AL  + E L  +++   SF   VS++LR+PL +IIGF DLL       L+ K 
Sbjct: 274 KILELNLALRNQLEQLGASNKELESFSYSVSHDLRAPLRHIIGFVDLLNAKAGNVLDEKS 333

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+E IS ++  +  L++D+L  + +  G  ++    + L  L+ E+   + +   E  
Sbjct: 334 RHYLEVISEAANKMGLLIDDLLAFSRM--GRSEMMKGWVDLGLLVREIVNDLESDSKERE 391

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSVK 724
           I+  +     L   + D   L Q+   ++ NA+ F+   + + + + A     +    V+
Sbjct: 392 IQWDI---APLPIVLGDAAMLRQVLINLIGNAVKFTRSREEAKIAIGAIDQEQETEIFVR 448

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +NG    E     +F  F       +  G G+GL+IV+  +  HGG V    + +G  T 
Sbjct: 449 DNGVGFDEAYASKLFGLFQRLHANEEFEGTGVGLAIVQRIVLRHGGRVWAEGAVDGGATF 508

Query: 785 NCRIPS 790
              +P 
Sbjct: 509 RFSLPK 514



 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 99/288 (34%), Gaps = 20/288 (6%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANISYKKNTETEGI 231
            + ++      +  +L   +  F++L + + ++ V   D  G+I   N   ++ T+  G 
Sbjct: 5   DLTTDSGARKQEPGQLQGDL-PFRLLVEQVKEYAVALLDPQGNISSWNAGAEQITKYRGS 63

Query: 232 V----FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL---- 283
                    +    +L     ++ +  + +L     +     + G+     I        
Sbjct: 64  EVIGKHFSLLHPKEELRSGAPERELAIARSLGSLDLQGWRLKKDGSRFWAAITLTALYDQ 123

Query: 284 --NSFGEAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVE 337
             N  G A IA D +++   ++ L  +  +L  L       I + D N  ++  N+    
Sbjct: 124 GENLAGFALIAHDNTEKRASDEALVKSRNMLERLFETAPDGIVVVDDNGVIRRTNQQAEI 183

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPN 396
            +      +        + E     ++   +  +   +     +  +    HKD   +P 
Sbjct: 184 TFGYMREEMLGQRIELLVPERYHKHHRQHRRNYFADPRARKMGIGLELYGRHKDGHEIPV 243

Query: 397 GQTLHVIVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHL 443
              L+ I T  P G  ++ +  ++T Q   E K   L       ++ L
Sbjct: 244 DIMLNPIET--PDGTWVFAVIRDITSQRQGEAKILELNLALRNQLEQL 289


>gi|294506864|ref|YP_003570922.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
 gi|294343192|emb|CBH23970.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
          Length = 352

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 125/294 (42%), Gaps = 4/294 (1%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           ++AA         + LQG L  +       +  P            + +  R  ++L  +
Sbjct: 52  VYAASHVWLHRRLRHLQGVLHEIRTHEF-AAETPPSGPHGDELSTLLWEVYRTGQSLETE 110

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            + L++ +  +  F+ +VS+EL++P+ ++ GF + L    L    S    +++ I   + 
Sbjct: 111 IQELKEMESYRREFIGNVSHELKTPIFSVQGFAETLLDGALDD-ESVNRTFLKKILHHAN 169

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L +L  D+  +  ++   + ++     + +L +   +S+  +  E  I  +      L 
Sbjct: 170 RLDSLARDLSTITKIETDELDMSNEAFNVAELFDAAIESVEIRAEEKGIMPRQRVAPDLP 229

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  RL ++   ++ NA+ ++  G TV L+A   N + +  V ++G  I  D    +
Sbjct: 230 QIYGDFDRLRRVLVNLVDNAIKYNQDGGTVQLEAESQNDEVVIRVVDDGIGISPDHLPRL 289

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             RF        R   G GLGL+IV+  +  H   + + S+ E  +T    +P+
Sbjct: 290 TERFYRVDKSRSRNQGGTGLGLAIVKHILAAHDRELHVESAPEEGSTFYFTLPT 343


>gi|255548630|ref|XP_002515371.1| sensor histidine kinase, putative [Ricinus communis]
 gi|223545315|gb|EEF46820.1| sensor histidine kinase, putative [Ricinus communis]
          Length = 930

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 128/267 (47%), Gaps = 31/267 (11%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L +      +    K   +  +S+E+RSPL+ ++   ++L T+   +L+ +Q Q + 
Sbjct: 353 ETELNKTIHITEETMRAK-QMLATMSHEIRSPLSGVVSMAEILSTT---NLDREQRQLLN 408

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            + +S  ++L L+NDILDL+ V++G+MKL  +     +++  V Q+ A  + +  I    
Sbjct: 409 VMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLKKFLILEGC 468

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD------NGD------ 718
           ++D      + D  R+ QI + ++SNA+ F+ +G   + L    D      +G+      
Sbjct: 469 VADDVPIEVIGDVLRIRQILTNLISNAIKFTHEGKVGINLYVVADPCFGKADGNHQKSSA 528

Query: 719 ------------FIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESF 764
                           V + G  IPE+   ++F ++  VS  H  +  G GLGL+I +  
Sbjct: 529 KEEAQSQETLVWLRCDVYDTGIGIPENALPTLFKKYMQVSADHARKYGGTGLGLAICKQL 588

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + L GG +++SS     +T    +P K
Sbjct: 589 VELMGGRLTVSSRVNCGSTFTFILPYK 615


>gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
 gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
          Length = 1307

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/410 (22%), Positives = 174/410 (42%), Gaps = 48/410 (11%)

Query: 415  MFENLTVQVDLETKYNTLVKVQGETI---DHLSEGVAVF-GPDGRIKLSNPAFRSLWKTE 470
            +   +   + L        + +G+     +    G+AV+ GP+  I+++NP   ++    
Sbjct: 762  LIARVATHLQLGEHRRAAERERGKMFALFEQAPVGIAVYRGPEHVIEMANPRLVAMVG-- 819

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--------DDERKSLQGTLELLS 522
                    H   I  T ++ + E  G  L       F         D R  L+    +  
Sbjct: 820  --------HRDVIGRTLAQAFPEIVGSPLLEVFHRVFASGEPFVTHDYRFDLERGDGVRE 871

Query: 523  DSVLEYSIIPLPN-----AQTMLTFVNVTDSVRAERALT--------------EKNEALR 563
            +    +++ P+       A+ ++  ++VTD VRA + L               +      
Sbjct: 872  ELYWSFNLHPMREPGAAVARILVVALDVTDYVRARKKLEAAAREREELLRRAEDARRDAE 931

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +A+  K+ F+  + +ELR+PL  I+    L++    G    ++      I      L  L
Sbjct: 932  RANRAKDEFLAMLGHELRNPLAPIVTALHLMRLRAGGHAERERL----VIERQIKHLTAL 987

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            V+D+LD++ +  G ++L    I + D++ +  +  +  + +    + V       +   D
Sbjct: 988  VDDLLDVSRITRGKVELKKQRIEIADVVAKAVELASPLLEQRRHHLTVTVPSSGLAVEGD 1047

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
              RL Q+ S +L+NA  ++  G  + ++A R  G+   SV++NG  I  +M  SVF RFV
Sbjct: 1048 VTRLAQVVSNLLTNAAKYTESGGEIAVRAGRVEGEVALSVRDNGIGIAPEMLPSVFERFV 1107

Query: 744  S--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
                A    + G+GLGL+IV + I +HGG VS  S      +    R+P+
Sbjct: 1108 QERQALDRSQGGLGLGLAIVHNLIAMHGGRVSAHSEGRGRGSEFTIRLPA 1157



 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 6/226 (2%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           D  K  F  +VS+E R+PLT ++G    ++ +      +   +++     ++  LL LVN
Sbjct: 369 DSAKTLFFSNVSHEFRTPLTLMLGP---MEDALASPERALCGEHLSLAYRNALRLLKLVN 425

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            +LD + ++ G  + +Y    L  L  ++  +  + +    +  KV           DR 
Sbjct: 426 ALLDFSRLEMGRAQASYDPTDLAGLTVDLASAFRSAIERAGLAFKVDCPELPEPVFVDRD 485

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
              +I   +LSNA+ F+  G  ++L            V++ G+ IPE     +F RF  V
Sbjct: 486 MWEKIVLNLLSNALKFTFDGE-ILLLLRAREDQVELVVRDTGTGIPEHELPHLFERFHRV 544

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             A      G G+GL++V   + LHGG +   S     T     IP
Sbjct: 545 QGARARTHEGSGIGLALVHELVRLHGGSIRAESRLGEGTAFTIAIP 590



 Score = 38.8 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 71/252 (28%), Gaps = 38/252 (15%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIF-DQNRYLQFHNRSFVEL------WEIDLAFLAT 348
                    +    + +     V IA++      ++  N   V +          LA    
Sbjct: 774  EHRRAAERERGKMFALFEQAPVGIAVYRGPEHVIEMANPRLVAMVGHRDVIGRTLAQAFP 833

Query: 349  NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
                  LLE         E      ++   F + +     ++ +   N   LH +     
Sbjct: 834  EIVGSPLLEVFHRVFASGEPFVTHDYR---FDLERGDGVREELYWSFN---LHPMREPGA 887

Query: 409  RGGTIWMFE-NLTVQVDLETKYNTLVKVQGETIDHLSEG--------------VAVFGPD 453
                I +   ++T  V    K     + + E +    +               +A+ G +
Sbjct: 888  AVARILVVALDVTDYVRARKKLEAAAREREELLRRAEDARRDAERANRAKDEFLAMLGHE 947

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R    NP    +      RL  G H     A   R   E     L  A++    D  + 
Sbjct: 948  LR----NPLAPIVTALHLMRLRAGGH-----AERERLVIERQIKHL-TALVDDLLDVSRI 997

Query: 514  LQGTLELLSDSV 525
             +G +EL    +
Sbjct: 998  TRGKVELKKQRI 1009


>gi|163797110|ref|ZP_02191065.1| ATP-dependent protease peptidase subunit [alpha proteobacterium
           BAL199]
 gi|159177626|gb|EDP62179.1| ATP-dependent protease peptidase subunit [alpha proteobacterium
           BAL199]
          Length = 507

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 160/390 (41%), Gaps = 43/390 (11%)

Query: 421 VQVDLE--TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
            +  LE   +     + +   I+ + + + +  P GR+ L+N   R  +  +       T
Sbjct: 132 DRHTLEWVERSRQRSESRDLVIESIPDPLLLIDPRGRVALANSEARRQFGKQIVGRDLST 191

Query: 479 HIRN--IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            IR+  I AT  +      G D+  A           L   +E + +  +E  + P P+ 
Sbjct: 192 VIRHPGILATVRQVLAGEPGGDVEIA-----------LAAPVERVFNVRIEALMEPEPDG 240

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            + L              L     A+R+ ++++  FV +VS+ELR+PL  ++GF + L+ 
Sbjct: 241 ASALM-------------LFVDLSAIRRTEQMRVDFVANVSHELRTPLATLLGFIETLQG 287

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                  ++   ++E +      +  LV D+L L+ ++    K     I L  +LN VK 
Sbjct: 288 PARDDAEARDR-FLEIMRVQGNRMSRLVQDLLSLSRIEISEHKPPSERIDLEPMLNSVKA 346

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           ++  +    ++R+ +  D  L   V     L Q+   +L NA+ +   G+ + + A R +
Sbjct: 347 TLDLEARRKDMRVGLEVDATLPQVVGAADELTQVVQNLLDNAIKYGKPGTEITVAARRAD 406

Query: 717 ------------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVE 762
                            +V++ G  IP +    +  RF        R   G GLGL+IV+
Sbjct: 407 RVPASYPGGPSGKAVAIAVRDRGDGIPAEHIPRLTERFYRVDAARSRDLGGTGLGLAIVK 466

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             ++ H G ++I S+    +     +P  E
Sbjct: 467 HIVSRHRGTLTIHSTPGEGSVFTVYVPVGE 496


>gi|16904238|gb|AAL30826.1|AF435964_1 two-component osmosensing histidine kinase BOS1p [Botryotinia
           fuckeliana]
          Length = 1315

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 15/240 (6%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  +   + 
Sbjct: 718 REAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNIVHNLAN 774

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +    D  + 
Sbjct: 775 SLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNALKTLAVKANEKFLDLTYRVDSSVP 834

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSVKNNGSS 729
              V D  RL Q+   ++ NA+ F+  G  V L   +   D          F V + G  
Sbjct: 835 DHVVGDSFRLRQVILNLVGNAIKFTEHGE-VSLTIQKAEQDHCAPNEYAVEFCVSDTGIG 893

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F+ F        R   G GLGLSI +  +NL  G V + S     ++    
Sbjct: 894 IQADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|89896384|ref|YP_519871.1| hypothetical protein DSY3638 [Desulfitobacterium hafniense Y51]
 gi|89335832|dbj|BAE85427.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 305

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 6/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            A+ +    L   + ++  F+ +VS+E++SPLT+I GF  LLK   L     ++ +Y E 
Sbjct: 66  EAINDMARGLGNLETMRQDFISNVSHEIQSPLTSISGFAGLLKKEDLP--TEQRRRYAEI 123

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   S  L +L  ++L L T+D   + LN     L+  L  V   +  +    N+ ++  
Sbjct: 124 IEGESKRLSSLSENLLKLTTLDNSKLSLNRQDFRLDKQLEHVALLLEPQWSAKNLTLE-- 181

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +D  L     D   L Q+++ +L NA+ F+ +G  + ++  R+      ++ + G  I  
Sbjct: 182 ADLPLCILCGDEDLLSQVWTNLLHNAIKFTPEGGQISIELKREGNTAQVTIGDTGIGIGP 241

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F RF        R   G GLGLS+V+  ++LH G + + S+    TT    +P
Sbjct: 242 EDRIHIFERFYKADKARARSAGGNGLGLSLVKKIVDLHEGSIGVESTIGKGTTFEIFLP 300


>gi|332344198|gb|AEE57532.1| sensor protein EvgS [Escherichia coli UMNK88]
          Length = 1127

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|323970930|gb|EGB66181.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
          Length = 1127

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|331642996|ref|ZP_08344131.1| sensor protein EvgS [Escherichia coli H736]
 gi|323961434|gb|EGB57045.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|331039794|gb|EGI12014.1| sensor protein EvgS [Escherichia coli H736]
          Length = 1127

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|301023646|ref|ZP_07187402.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|299880747|gb|EFI88958.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
          Length = 1139

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 460 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 519

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 520 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 578

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 579 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 638

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 639 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 696

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 697 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 756

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 757 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 816

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 817 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 876

Query: 789 PSK 791
           P +
Sbjct: 877 PVE 879


>gi|238901539|ref|YP_002927335.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli BW2952]
 gi|238861440|gb|ACR63438.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli BW2952]
 gi|260448539|gb|ACX38961.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|315137006|dbj|BAJ44165.1| hybrid sensory kinase in two-component regulatory system
           [Escherichia coli DH1]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|194436363|ref|ZP_03068465.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           101-1]
 gi|194425091|gb|EDX41076.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           101-1]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|153871895|ref|ZP_02000948.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152071640|gb|EDN69053.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 490

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 15/258 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             RA+   T   E    A   K+ F+ ++S+ELR+PL  I+G+  +LK +K   L + Q 
Sbjct: 5   MYRAKDRATAAREQAEAASRSKSEFLSNMSHELRTPLNGILGYAQILKRNK--KLTTMQR 62

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I +S   LL L+NDILD++ ++AG M+L   ++ L + L+ +   I  +  E N+
Sbjct: 63  DGLNVIDSSGRHLLTLINDILDMSKIEAGKMELYACSLNLQNFLDNIGGVIRMRAEEKNV 122

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI---------LKAARDNG 717
             K      L      D +RL QI   +L NA+ F+ +G  ++         +K      
Sbjct: 123 FFKFEMPIPLPIGVSVDEKRLRQILINLLGNAVKFTQQGQVILRVTPLGSPQIKDDLQQQ 182

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              F V++ G  + ++    +F  F      + ++ G GLGL+I +  + L G  + + S
Sbjct: 183 LIRFEVEDEGIGMTQEELGKIFLAFEQVGDEKMRQAGTGLGLAISKRLVELMGSQLVVKS 242

Query: 777 SDEGVT--TINCRIPSKE 792
                +       +P  E
Sbjct: 243 EKNKGSNFQFEIMLPLVE 260


>gi|16130302|ref|NP_416871.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli str. K-12 substr. MG1655]
 gi|89109190|ref|AP_002970.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli str. K-12 substr. W3110]
 gi|170019338|ref|YP_001724292.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli ATCC 8739]
 gi|253772721|ref|YP_003035552.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162363|ref|YP_003045471.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli B str. REL606]
 gi|256021930|ref|ZP_05435795.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia sp. 4_1_40B]
 gi|301647536|ref|ZP_07247336.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307139018|ref|ZP_07498374.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli H736]
 gi|2507377|sp|P30855|EVGS_ECOLI RecName: Full=Sensor protein evgS; Flags: Precursor
 gi|1788713|gb|AAC75429.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli str. K-12 substr. MG1655]
 gi|1799781|dbj|BAA16241.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli str. K12 substr. W3110]
 gi|169754266|gb|ACA76965.1| Hpt sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|242377988|emb|CAQ32758.1| EvgS sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323765|gb|ACT28367.1| Hpt sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974264|gb|ACT39935.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli B str. REL606]
 gi|253978431|gb|ACT44101.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli BL21(DE3)]
 gi|301074332|gb|EFK89138.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|315615624|gb|EFU96256.1| sensor protein evgS [Escherichia coli 3431]
 gi|323941123|gb|EGB37309.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|300868651|ref|ZP_07113263.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333345|emb|CBN58455.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 663

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 124/259 (47%), Gaps = 23/259 (8%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                L E  E    A+E K+ F+ ++S+ELRSPL  I+GF+ ++  SK  +L S+  + 
Sbjct: 170 ELNAELAEAKEKAEVANEAKSIFLANMSHELRSPLNAILGFSQIMTRSK--TLPSEHIEN 227

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  IS S   LL+L+N++LDL+ ++AG   LN     L  LL++++     K  +  +++
Sbjct: 228 VGIISRSGEHLLSLINNVLDLSKIEAGHTTLNEKNFDLYRLLDDLEDMFHLKADDRRLQL 287

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------- 720
                  +  +V  D  +L QI   +L+NA+ F+  G  V ++   D G  +        
Sbjct: 288 IFERSPDVPRYVRTDEVKLRQILINLLNNALKFTQVGG-VSVRVVTDGGSLVTGTATKQI 346

Query: 721 ----------FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHG 769
                     F V+++G  I  +   S+F  FV     +  + G GLGL I   F+ L G
Sbjct: 347 TDESEKTMLRFEVEDSGPGIAPEELDSLFEVFVQTQTGKEAQEGTGLGLPISRKFVQLMG 406

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +++SS     T     I
Sbjct: 407 GEIAVSSEVGSGTNFKFNI 425


>gi|294776221|ref|ZP_06741706.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|294449904|gb|EFG18419.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 757

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/390 (22%), Positives = 169/390 (43%), Gaps = 26/390 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWK 468
           G  ++    T++   + +    ++ + E +    EG     +  DG+  + + AF  L  
Sbjct: 381 GIAYLIYIYTLEKGRKKEALRNLRFEHEALTLALEGGNTYAWCFDGKTAVLDQAFCELTN 440

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDS--V 525
             +N L     I  IA     +Y   D    F   +++    +R++ Q   +        
Sbjct: 441 RSQNLLG----IEEIA-----HYVHPDEQARFRKNVSNILYRQRRTAQYRCQFNDTGYQW 491

Query: 526 LEYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            E+    L N +          N+ +    E  L    + L +  E+K SF+ ++S+E+R
Sbjct: 492 WEFRYSVLQNNEQNPIITGLLVNIQEIKDKEEELIRARK-LAEQAELKQSFLANMSHEIR 550

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GF++LL T K  S   ++ ++   I  ++ +LL LVND+L+L+ +++G M  +
Sbjct: 551 TPLNAIVGFSNLLTTEKNIS-EEEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFH 609

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                 +     V Q+    +    +        +  +   DR RL Q+ +  L NA  F
Sbjct: 610 CEDCSAHHFAETVYQTHQVIILP-PVEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKF 668

Query: 702 SSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           +S+G  + L     ++  +    V++ G+ IP++  + +F RF       Q  GVGLGL+
Sbjct: 669 TSQGH-IKLGYFCDKEKKEIHIFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLA 725

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I +  +    GH+ + S     +     +P
Sbjct: 726 ISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 755


>gi|223986669|ref|ZP_03636659.1| hypothetical protein HOLDEFILI_03981 [Holdemania filiformis DSM
           12042]
 gi|223961355|gb|EEF65877.1| hypothetical protein HOLDEFILI_03981 [Holdemania filiformis DSM
           12042]
          Length = 879

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 169/387 (43%), Gaps = 24/387 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETID----HLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENR 473
           +     +E +    V  + +  D    ++ +   ++    + ++  +P    +    E++
Sbjct: 200 IQNSRHMERRRVHDVADREKMFDLLSNNVDDVFFIYNLKEKWMEYISPNCERILGLNEDQ 259

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L    H     A  S   +++  + LF + I     E  SL+   + + D  L     P+
Sbjct: 260 LQ---HYDAFTAKLSEN-DQAALYQLFHSGILRSQAEI-SLKMEGQGIRDKWLLLKAYPI 314

Query: 534 ----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                  + +++  + TD++ A++ L +     +KA++ K  F+  +S+E+R+P+  IIG
Sbjct: 315 LVNDQVVRYIISIGDQTDALLAQQNLRDALTLAQKANDAKKDFLSRMSHEIRTPMNAIIG 374

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
              +   +      ++    +  I  SS  LL+L+ND+LD++ ++ G + +++       
Sbjct: 375 MATIAAANIHDQ--NRVEDCLAKIGFSSKHLLSLINDVLDMSKIEEGKLTMSHEPFEFRQ 432

Query: 650 LLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           L+  +   I ++    N   +  + D      V D  R+ QI   +LSNA+ F+ +   +
Sbjct: 433 LIQSITSIIDSQARSRNQNFEATVVDFTEEMVVGDAMRVNQILLNLLSNAVKFTPENGKI 492

Query: 709 ILKAAR-----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            L+  +     +     F+V + G  + E+  + ++  F         +  G GLG+SI 
Sbjct: 493 RLEVRQIGIRNNQVRMRFTVSDTGIGMNENFLQRLYMPFEQADSMISQRFGGTGLGMSIT 552

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRI 788
           ++ ++L GG + + S +   TT    +
Sbjct: 553 KNLVSLLGGTIQVFSKENEGTTFIVEL 579


>gi|170756067|ref|YP_001783182.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169121279|gb|ACA45115.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 469

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++    
Sbjct: 235 NSMAESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVP--EEKQNYYLKLTYE 292

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V  + 
Sbjct: 293 EIQRLTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLED 352

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  
Sbjct: 353 DKVYVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDI 412

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K +++RF         +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 413 KHIWDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|309790555|ref|ZP_07685111.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227406|gb|EFO81078.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 748

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 158/394 (40%), Gaps = 49/394 (12%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----EENRLSPGTHIRNIAAT 486
           +  +     +  ++EGV +    GR+ L+N A  +L +      E RL+       +   
Sbjct: 370 SERRKLHTVVTSIAEGVLLCDGRGRLTLANEAALTLLRLDSLPFEQRLADMPDFYRMRDL 429

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                         A     F D R  L G+     ++V+ +S  P              
Sbjct: 430 DGHRLTLDQLPFARALAGEIFQDYRLMLSGS--SGDETVMSFSGAP-----------ARA 476

Query: 547 DSVRAERALTEKNE--ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL--KTSKLGSL 602
           D  + E A+    +    +K ++ K+ F+   ++ELRSPL  +  + DLL  +  +    
Sbjct: 477 DDGQIEGAVVVFRDVTTHQKLEQAKDEFLAVAAHELRSPLAAVRNYADLLLRREQQRSQA 536

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +S+  + +  ++   + +L +V+++LD++ +DAG + L    + L  L+N+V        
Sbjct: 537 DSRDVRGLTILTQQVSHMLRMVDNLLDVSRIDAGQLDLQLQPVNLVALVNQVIDQQRPAA 596

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------- 714
                 + +           D  R+ Q+ + +++NA+ +S +G  V ++           
Sbjct: 597 GTR--ELILEYPDTELLIACDSLRIHQVMTNLINNAIKYSPEGGRVSVRLRVVLGEERHI 654

Query: 715 -----------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
                            ++G  + ++ + G  I  +    +F RF   A   +  G+GLG
Sbjct: 655 FADQPSAEVEALLQRSAEHGLVVITITDEGGGITPEQQARLFERFYR-ARSQRAEGLGLG 713

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           L +   F+ +HGG + + S +   +T    +P +
Sbjct: 714 LYLSRQFVQMHGGVIWVESVEGAGSTFAFALPIR 747



 Score = 47.2 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 84/254 (33%), Gaps = 25/254 (9%)

Query: 288 EAGIAI-DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID---- 342
           + G A+ +V      + +    + ++ ++   + + D    L   N + + L  +D    
Sbjct: 354 QVGFAVANVRLYADSSSERRKLHTVVTSIAEGVLLCDGRGRLTLANEAALTLLRLDSLPF 413

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK---SSETHKDTWHLPNGQT 399
              LA  P    + +       L +    +     IF  Y+   S  +  +T    +G  
Sbjct: 414 EQRLADMPDFYRMRDLDGHRLTLDQLPFARALAGEIFQDYRLMLSGSSGDETVMSFSGAP 473

Query: 400 LHVIVTSNPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV-----AVFG 451
                     G   G + +F ++T    LE   +  + V    +      V      +  
Sbjct: 474 AR-----ADDGQIEGAVVVFRDVTTHQKLEQAKDEFLAVAAHELRSPLAAVRNYADLLLR 528

Query: 452 PDGRIKLSN----PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            + +   ++         L +   + L    ++ +++   +   +         A++   
Sbjct: 529 REQQRSQADSRDVRGLTILTQQVSHMLRMVDNLLDVSRIDAGQLDLQLQPVNLVALVNQV 588

Query: 508 DDERKSLQGTLELL 521
            D+++   GT EL+
Sbjct: 589 IDQQRPAAGTRELI 602


>gi|167469341|ref|ZP_02334045.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis FV-1]
          Length = 616

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 148/371 (39%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   +     + +++      
Sbjct: 313 LDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    +AD  RL QI   ++ NA+ F+ +G  V+      N   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +       G R   G G+GL++ +      GG +++ S+
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGVGSCFTLTI 503



 Score = 41.1 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 ------VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|218709788|ref|YP_002417409.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32]
 gi|218322807|emb|CAV18984.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32]
          Length = 565

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   +++     FV  +++ELR+PL  ++G  +L+  ++   L++ Q + V  +S S  
Sbjct: 195 RKRAEESERATRDFVAMINHELRTPLNGLLGSAELISDTE---LSNSQREIVNNLSQSGE 251

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKL 677
            L  ++ND+LD + ++AG+++L   T  L DL N +      +  E  I+  V ++DG  
Sbjct: 252 FLRTIINDLLDYSKINAGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVP 311

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             F  D +R+ Q+F  ++ NA+ F+ +G  V ++    N  FIFSV+++G  I +   K+
Sbjct: 312 SHFYGDLERITQLFVNLIGNAIKFTDQGH-VSVEIKWLNDQFIFSVEDSGVGIAQSAIKT 370

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F    +   R   G GLGL+I      L  G + +SS     TT    +P +
Sbjct: 371 LFEPFTQADNSSSRNYEGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLPLQ 426


>gi|209808886|ref|YP_002264424.1| membrane associated response regulator,histidine kinase [Aliivibrio
           salmonicida LFI1238]
 gi|208010448|emb|CAQ80807.1| membrane associated response regulator,histidine kinase [Aliivibrio
           salmonicida LFI1238]
          Length = 818

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 129/246 (52%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R E+ +        KA++ K+SF+ ++S+E+R+PL  IIG T++L    + +L + Q  Y
Sbjct: 304 RLEKRILRSQNQEIKANKAKSSFLANMSHEIRTPLNGIIGMTEILS---VSTLTAIQKDY 360

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  I+ASS  LL L+ND+LDL+ +++G +++N  +  + +++ +    IA K  +  + I
Sbjct: 361 LATINASSQTLLMLINDVLDLSKIESGNIEVNTHSCKIKEVIFDTAALIAPKAQQKGVNI 420

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST----VILKAARDNGDFIFSVK 724
           K+I      ++V AD Q++ Q+   + SNA+ F+  GS      +++    +  + FSVK
Sbjct: 421 KIIMSENFPTYVKADEQKIRQVLMNLASNAIKFTEAGSISFELSLIEETDTSYRYFFSVK 480

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I E   + VF  F    +       G GLGL+I    I + G  + + SS    +
Sbjct: 481 DTGLGIEESKHEQVFEEFKQEDDDTSKNYGGTGLGLAISSKMIKMMGNEIKLKSSKGVGS 540

Query: 783 TINCRI 788
                +
Sbjct: 541 EFYFSL 546


>gi|167629620|ref|YP_001680119.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592360|gb|ABZ84108.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 481

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 7/230 (3%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             +  FV   S+ELR+PL+ +    D+++     +L+    Q +  +      +  LV D
Sbjct: 249 HRQREFVADASHELRTPLSILQSSIDVIEADDARNLSEFSRQVLADMKDEVGRMTRLVGD 308

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +L LA  D+G ++L   +  L  +  ++ ++   +     + +++     L  FV DR+R
Sbjct: 309 LLTLARADSGKLELQRESFDLRPVAEQLFRTFQHRAKAQGLTMEMEGPPTLPVFV-DRER 367

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           + Q+   +L NA+ ++ +G  V L  AR     N      V++ G  I  +  + +F RF
Sbjct: 368 ITQLLCILLDNAVKYTPEGGKVSLSLARSGGGHNDTLQVKVQDTGIGISAEDQQHIFERF 427

Query: 743 VSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                    Q  GVGLGLSI    +  HGG + + S+    ++    +P+
Sbjct: 428 YRADKGRSRQAGGVGLGLSIARWIVEAHGGTIRVESAPGKGSSFIVIVPA 477


>gi|309702664|emb|CBJ01993.1| putative hybrid sensory histidine kinase in two-component
           regulatory system [Escherichia coli ETEC H10407]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|253576699|ref|ZP_04854026.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843909|gb|EES71930.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 482

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 6/247 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +       L    E + ++++IK+ F+  +S+ELR+PLT I G+++ L +        +
Sbjct: 222 YELGELAATLNYMAEEIVRSNQIKDDFISSISHELRTPLTGIKGWSETLTSGGFDP--EE 279

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +  I+  +  L+ LV +ILD + + +  MKL    + L +LL E   ++  K  + 
Sbjct: 280 TKIGIGIIAKETDRLIGLVEEILDFSKLQSNEMKLVIGEVNLKELLQETMLNVWAKAEQK 339

Query: 666 NIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSV 723
           +I++K+       + V  D  RL Q+F  ++ NA+ FS + S + L   R D       V
Sbjct: 340 HIQLKLEDKTDGTAIVSGDGNRLKQVFLNVVDNAIKFSHEQSWIHLVIDRLDAERVKVDV 399

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            ++G  I E+  K V +RF    H+G   G GLGL+I +  + LH G + I S     TT
Sbjct: 400 IDSGIGISEEYLKKVKDRFFQVNHQG--GGTGLGLAISQQLVELHHGEMEIQSELGVGTT 457

Query: 784 INCRIPS 790
           ++  +P 
Sbjct: 458 VSVILPL 464


>gi|254255329|ref|ZP_04948645.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124901066|gb|EAY71816.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 1020

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 154/383 (40%), Gaps = 32/383 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           T+     ++    I     G+A+     G + L N          E+ LS          
Sbjct: 397 TRLVDSERLNRTLIRTAPVGLALIAESTGAVLLRNEIMVRHDGGAEHALSR--------R 448

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT---MLTF 542
                    D        +    +   +L    E  +D+ L  +++ +        + T 
Sbjct: 449 IWQSLAGAPDANPTLRKRLIGSRE--ITLPAGGERTTDTHLLVNLVRVKYGGESALLCTV 506

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           V++T     E++L     A  +A+  K+ F+  +S+E+R+PL  +IG  +L+K    G L
Sbjct: 507 VDITARKLTEQSLDAARRAADQANRAKSVFLATMSHEIRTPLNAVIGNLELMKR---GPL 563

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q + +     SST LL+++ND+LDL+ V+AG ++++        LL++V +S     
Sbjct: 564 ADAQRRRLHAADTSSTALLHILNDVLDLSKVEAGQLRIDAVPFDCAALLDDVTESFRPLA 623

Query: 663 HENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----------- 710
               + +      +     + D  R+ QI S +LSNA+ F+  G   +            
Sbjct: 624 ERKGLSVICDVALEPSPYRIGDPIRIRQIVSNLLSNAIKFTDAGHVRVAAHAASDAAHGT 683

Query: 711 -KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINL 767
            + A         V + G  IPE    ++F  +         +  G GLGL++    ++ 
Sbjct: 684 GRTAGGAPVVEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLGLALCRRLLDA 743

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
             G +++SS+    +T   RIP 
Sbjct: 744 MSGDIAVSSAPGAGSTFRVRIPL 766


>gi|262169665|ref|ZP_06037356.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC27]
 gi|262021899|gb|EEY40609.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC27]
          Length = 1176

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 152/363 (41%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +      + L+N A+R ++ T                 CS +
Sbjct: 522 EQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 575

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 576 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 633

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      NS+    +
Sbjct: 634 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---NSESQLLL 690

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 691 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLTDELGPLLRGFEASAQLKEIEFD 750

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 751 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 809

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 810 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 869

Query: 788 IPS 790
           +P 
Sbjct: 870 LPL 872


>gi|92113759|ref|YP_573687.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
 gi|91796849|gb|ABE58988.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
          Length = 930

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 142/315 (45%), Gaps = 19/315 (6%)

Query: 481 RNIAATCSRY---YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           R + A   R+        G D  A +      E  +L   L  L + +    +     AQ
Sbjct: 180 RRLTAPLQRHITLLERLHGGDFSARLTPRGSRELVTLGHQLNALGEQM--MRLREDTQAQ 237

Query: 538 TMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              T  ++ +S+         L   +    +A+ IK+ F+ ++S+E+R+PL  IIGF  L
Sbjct: 238 IDQTTFDLRESMETIEVKNIELDMAHRRALEANRIKSQFLANISHEIRTPLNGIIGFCQL 297

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L  S   +L+S+Q +++E +  +S  LL+L++D+LD + ++AG ++L    + +  L++E
Sbjct: 298 LGRS---ALDSRQREWLEQVQTASDNLLSLISDVLDFSKIEAGKLELETVPVDMVTLVDE 354

Query: 654 VKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           V    A      ++ +  ++ D      + D  R+ QI + +++NA+ F+ +G  V+   
Sbjct: 355 VLGLQAPTAQRKSLHLLGLVYDDVPDQLLGDPLRIKQILTNLVNNAVKFTERGEVVVRVM 414

Query: 713 ARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
             D    +     SV++ G  +     + +F  F         +  G GLGL I +  + 
Sbjct: 415 LDDLNATSSKLRISVRDTGIGLDLPSRERLFQAFSQGDASRSRKYGGTGLGLMISKRLVE 474

Query: 767 LHGGHVSISSSDEGV 781
             GG + + S     
Sbjct: 475 QMGGDIDVESESGEG 489


>gi|333016459|gb|EGK35790.1| sensor protein evgS [Shigella flexneri K-304]
          Length = 1127

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|333015994|gb|EGK35326.1| sensor protein evgS [Shigella flexneri K-227]
          Length = 1127

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|332755415|gb|EGJ85779.1| sensor protein evgS [Shigella flexneri K-671]
          Length = 1128

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 449 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 508

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 509 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 567

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 568 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 627

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 628 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 685

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 686 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 745

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 746 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 805

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 806 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 865

Query: 789 PSK 791
           P +
Sbjct: 866 PVE 868


>gi|332755015|gb|EGJ85380.1| sensor protein evgS [Shigella flexneri 4343-70]
          Length = 1147

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 468 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 527

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 528 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 586

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 587 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 646

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 647 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 704

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 705 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 764

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 765 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 824

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 825 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 884

Query: 789 PSK 791
           P +
Sbjct: 885 PVE 887


>gi|313651190|gb|EFS15589.1| sensor protein evgS [Shigella flexneri 2a str. 2457T]
          Length = 1128

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 449 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 508

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 509 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 567

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 568 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 627

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 628 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 685

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 686 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 745

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 746 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 805

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 806 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 865

Query: 789 PSK 791
           P +
Sbjct: 866 PVE 868


>gi|312829880|emb|CBX34722.1| sensor protein srrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|329727652|gb|EGG64108.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21172]
          Length = 564

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 205 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 262

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 263 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 315

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 316 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 349

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 350 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAVVLDESKRLNRLVNELLNVARMDAEG 408

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 409 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 467

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 468 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 527

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 528 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 564


>gi|281601798|gb|ADA74782.1| putative Sensor protein [Shigella flexneri 2002017]
          Length = 1088

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 409 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 468

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 469 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 527

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 528 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 587

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 588 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 645

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 646 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 705

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 706 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 765

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 766 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 825

Query: 789 PSK 791
           P +
Sbjct: 826 PVE 828


>gi|121727325|ref|ZP_01680472.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V52]
 gi|147674544|ref|YP_001217203.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O395]
 gi|121630331|gb|EAX62728.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V52]
 gi|146316427|gb|ABQ20966.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O395]
 gi|227013560|gb|ACP09770.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O395]
          Length = 1146

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 152/363 (41%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +      + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      NS+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---NSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLTDELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 721 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842


>gi|110806323|ref|YP_689843.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella flexneri 5 str. 8401]
 gi|110615871|gb|ABF04538.1| putative sensor for regulator EvgA [Shigella flexneri 5 str. 8401]
 gi|333001508|gb|EGK21076.1| sensor protein evgS [Shigella flexneri VA-6]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|24113731|ref|NP_708241.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella flexneri 2a str. 301]
 gi|24052805|gb|AAN43948.1| putative sensor for regulator EvgA [Shigella flexneri 2a str. 301]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|30063777|ref|NP_837948.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella flexneri 2a str. 2457T]
 gi|30042032|gb|AAP17758.1| putative sensor for regulator EvgA [Shigella flexneri 2a str.
           2457T]
          Length = 1197

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|57650447|ref|YP_186376.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195296|ref|YP_500100.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221611|ref|YP_001332433.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|221140088|ref|ZP_03564581.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253733261|ref|ZP_04867426.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451149|ref|ZP_05699184.1| sensor protein srrB [Staphylococcus aureus A5948]
 gi|284024551|ref|ZP_06378949.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848521|ref|ZP_06789267.1| sensor protein srrB [Staphylococcus aureus A9754]
 gi|297207789|ref|ZP_06924224.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911870|ref|ZP_07129313.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|76363425|sp|Q5HFT1|SRRB_STAAC RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363429|sp|Q6G973|SRRB_STAAS RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363430|sp|Q8NWF3|SRRB_STAAW RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|123003464|sp|Q2FY80|SRRB_STAA8 RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|57284633|gb|AAW36727.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           COL]
 gi|87202854|gb|ABD30664.1| staphylococcal respiratory response protein SrrB, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374411|dbj|BAF67671.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|253728801|gb|EES97530.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257861204|gb|EEV84017.1| sensor protein srrB [Staphylococcus aureus A5948]
 gi|294824547|gb|EFG40970.1| sensor protein srrB [Staphylococcus aureus A9754]
 gi|296887806|gb|EFH26704.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300886116|gb|EFK81318.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|315198818|gb|EFU29146.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140625|gb|EFW32479.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144161|gb|EFW35930.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 583

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 428 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 583


>gi|49483741|ref|YP_040965.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241870|emb|CAG40563.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 588

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 229 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 286

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 287 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNTRFFVVTTSYIDK------- 339

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 340 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 373

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 374 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 432

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 433 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTY-DMDRMDQVLTNLIDN 491

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 492 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 551

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 552 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 588


>gi|320160199|ref|YP_004173423.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994052|dbj|BAJ62823.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 467

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 6/274 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + D  L  + +     +  +   +  +  +  +A    ++ + +A++++      ++++L
Sbjct: 198 IKDLTLAATRMAQGELEQQVEVRSQDEIGQLAQAFNLMSQQIARANQLRRQMTADIAHDL 257

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT I G+ + ++   L     +    ++ I      L  +VND+  L+  DAG + L
Sbjct: 258 RTPLTVIAGYIESMRDGVLQPTPQR----LDLIYQEIERLQKMVNDLRMLSQADAGELNL 313

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +        LL            +  I +KV +   L + + D  R++Q+   ++SNA+ 
Sbjct: 314 HPQPTQPLALLKRAAHLFQHHAEQAGINLKVEASETLPAILVDEDRMMQVLDNLISNALR 373

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGL 758
           ++S G  + L+A +D       V + G+ IP +    +F RF         +  G GLGL
Sbjct: 374 YTSAGGEITLRAKQDGKQVRLQVADTGTGIPSEELPRIFERFHRVDPSRHSESGGSGLGL 433

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +IV + +   GG VS  S     TTI    P+ E
Sbjct: 434 AIVRALVEAQGGKVSAESELGKGTTITTEFPALE 467


>gi|311893921|dbj|BAJ26329.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1412

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 135/305 (44%), Gaps = 18/305 (5%)

Query: 500  FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
              + + +   E ++ Q  L+  +  + E +   L  AQ         +  +A + L E+ 
Sbjct: 788  LTSELQARSQELQARQEELQASNAELEEKAA--LLAAQNRDIETKNLEIEQARQELEERA 845

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              L  A   K+ F+ ++S+ELR+PL +++    LL  +   +L +KQ +Y   I ++ + 
Sbjct: 846  HQLSLASTYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTAKQVEYAGIIHSAGSD 905

Query: 620  LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
            LL L+NDILDL+ V+AG M L+   + L  LL+  + +      + N+   V +   +  
Sbjct: 906  LLQLINDILDLSKVEAGKMDLSPEPVALRSLLDYAEATFKPLTGQKNLAFTVRTSPDVPE 965

Query: 680  -FVADRQRLLQIFSKILSNAMDFSSKGSTVILK------------AARDNGDFIFSVKNN 726
              V D  RL Q+   +LSNA+ F+ +G  V L+              R      F V + 
Sbjct: 966  RLVTDDYRLRQVLRNLLSNAVKFTEQG-RVELRIGLAPQDRIPEGVRRGGPVLAFQVSDT 1024

Query: 727  GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I     +SVF  F         +  G GLGLSI      L GG ++  S     +T 
Sbjct: 1025 GIGIAPQHLESVFGAFQQADGTTSRKYGGTGLGLSISREIAYLLGGAITAESVLGAGSTF 1084

Query: 785  NCRIP 789
               +P
Sbjct: 1085 TLFLP 1089


>gi|238785117|ref|ZP_04629112.1| Aerobic respiration control sensor protein arcB [Yersinia
           bercovieri ATCC 43970]
 gi|238714009|gb|EEQ06026.1| Aerobic respiration control sensor protein arcB [Yersinia
           bercovieri ATCC 43970]
          Length = 778

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 145/371 (39%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      
Sbjct: 313 LDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLTGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +  +  L    + D  RL QI   ++ NA+ F+ +G  V+      N    
Sbjct: 373 VQPKGLKFIMEPELPLPEKIITDGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLT 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +             G G+GL++ +      GG +++ S+
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGSGSCFTLTI 503



 Score = 41.5 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|228920707|ref|ZP_04084048.1| hypothetical protein bthur0011_17190 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838925|gb|EEM84225.1| hypothetical protein bthur0011_17190 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 443

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 121/238 (50%), Gaps = 5/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L      + KA++IKN F+  +S+E+R+PLT I G+++ LK +       +  Q +  
Sbjct: 211 HSLNYMAYKIDKAEQIKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEIKQGMGI 269

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  I+    
Sbjct: 270 ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITT 329

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I +
Sbjct: 330 IDR--IELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAK 387

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +   F    +     G G+GL+IV+  + LHGG  S++S +   TTI  ++P 
Sbjct: 388 EHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHGGAFSVTSKEGIGTTILIKLPL 443


>gi|119485366|ref|ZP_01619694.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119457122|gb|EAW38248.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 947

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/874 (14%), Positives = 283/874 (32%), Gaps = 116/874 (13%)

Query: 16  ICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSE-------ICDQ 68
           I        A+   ++ + LT ++P IL       + + +      + E       +   
Sbjct: 91  ISGFIRAFTAIVSLMSAIALTMLMPAILTFPSPKQMEQSMRLLQQEIEERKQIEIELKKS 150

Query: 69  LSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLS-FENWLKFHHYIKL 127
             ++   L         W+       +  QL  + D+   D +L S FE W    H    
Sbjct: 151 EERWQLALKGTGDGIFDWEISTGELFMSAQL--KADLGYKDHELESNFEAWRSRIHPDDR 208

Query: 128 SKATEKLRKE--------GQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELA 179
            +  + ++K          + + L     +   I   G    +    + + + G   +++
Sbjct: 209 DRVLDTVQKHLDGKTKKYTEEYRLRCADGSYKWILARGLAQRNEQG-KPMRMVGSQQDIS 267

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
           +       L+   + +++L ++   ++      G  L+ + + +      G    + +G 
Sbjct: 268 DRKRAEDALTESEARYRLLAENAKDMISTHTCEGVFLYVSPASRHLL---GYEPDQLLGR 324

Query: 240 SR-KLFKEEIKKRMISSSALEKNFCETVSTL-----EHGNNKSYKIV-------RVLNSF 286
           S  + F          +  +     +  +T        G+   ++               
Sbjct: 325 SLYEFFHPTDVAAWQRTYTVVGQLPDEYTTTYRVRRRDGDYVWFETTSRAISSSSSTAEP 384

Query: 287 GEAGIAIDVSKEITVNDQLTH--------------------------------------- 307
               I+ D++      +++                                         
Sbjct: 385 IILCISRDITLRKQAEEEIARFNDELEQRVQERTAQLEVLNELKDELLERERVARTQAEA 444

Query: 308 -------TYEILHNLTVAIAIF---DQNR----YLQFHNRSFVELWEIDLAFLATNPSND 353
                    +I+ N+ + + ++   D        L   N +  +L  + L          
Sbjct: 445 AQAKIKIYEDIVENIPIGMTVWHLEDLEDLQSFSLVSSNPAASDLLGVQLN-SEVGKKMV 503

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           E    +   N    Q   +  +      +      +      N     V     P     
Sbjct: 504 ECFPKIPETNISLLQAYAQVIRHQQPCAFSEV---RYGDRRVNQSLFAVKAFPLPNQRLG 560

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             FE++T +  +E   +   ++    ++ + E +     +GR+   +PA+  + +   + 
Sbjct: 561 VAFEDITTRKRIEKALSESERLYRSVLNSVQEVIFQTDIEGRLVFLSPAWTFITEYSVSE 620

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-------LELLSDSVL 526
                 +  I A   + Y       L      +F  E +SL+ T       ++   +   
Sbjct: 621 SLDSPLLNYIYAEEDQQYCTEQFRRLMETEQDNFIFEFRSLKKTGDFCWLEIDAQLNRNT 680

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERA---------LTEKNEALRKADEIKNSFVQHVS 577
           +  +I +      +T    T+++   RA         L      L K ++  + F    S
Sbjct: 681 DNKVIGVWGTINDVTKRKQTEAILQARADELFQLNGILLATTGQLEKRNQELDQFAYVAS 740

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           ++L++PL  I   ++ ++      L+ +    +  +      + NL+N +L  + V  G 
Sbjct: 741 HDLKAPLRAIANLSEWIEEDLEDKLDDETRHQMSLLRGRVHRMENLINGLLQYSRV--GR 798

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           M++   ++ + +LL E+  S+            +  +G++ +    R  L Q+FS ++SN
Sbjct: 799 MQVKSESVQVRELLEEIIDSLDPPS-----TFTIEIEGEMPTLKTQRLSLQQVFSNLISN 853

Query: 698 AMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
           A+         V + +      + FSV ++G  I       VF  F +   R +    G+
Sbjct: 854 AIKHHDRPDGMVKVSSRDRGNFYEFSVTDDGPGIAPQYRDKVFTIFQTLKARDEAENTGI 913

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLSIV+  I   GG + + S  +   T     P 
Sbjct: 914 GLSIVKKIIEALGGTIELESQLDQGATFRFNWPK 947


>gi|283470770|emb|CAQ49981.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 564

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 205 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 262

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 263 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 315

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 316 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 349

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 350 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 408

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 409 LSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 467

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 468 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 527

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 528 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 564


>gi|239626561|ref|ZP_04669592.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516707|gb|EEQ56573.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 686

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 12/296 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEA 561
               + D  + ++    +        S +   N       +N        R AL    E 
Sbjct: 237 FRRQYPDRVQWVRSRFSVAQMKDGSVSKVVFANMNIHQQKINEMQQEEENRKALMTAYET 296

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            ++A E K+SF+  +S+++R+P+  IIG T +  +        +    +E I+ SS+ LL
Sbjct: 297 AKEASEAKSSFLAQMSHDIRTPMNAIIGMTAIAMSHSHEP--ERVEDCLEKINMSSSHLL 354

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSF 680
            L++D+LD++ ++ G M+L  +   ++ L++EV   I     E    +KV  +D K    
Sbjct: 355 ALIDDVLDMSRIEKGKMQLMDAPFCMDKLVDEVVTIIRPSAEERGHSLKVDTADLKHRRL 414

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDM 734
           + D  RL Q+   ++SN++ ++    TV L            G+F+F V+++G  + E+ 
Sbjct: 415 IGDSGRLRQVLLNLMSNSVKYTPGNGTVKLTVKEVAQRVAGFGNFVFIVEDSGIGMTEEF 474

Query: 735 CKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            K +F  F+          +G GLG+ I +  IN   G + + S     +     +
Sbjct: 475 RKYIFVPFLREEKVRETHIQGTGLGMPITQGIINAMQGSIQVESEPGRGSRFTVTL 530


>gi|282924740|ref|ZP_06332407.1| sensor protein srrB [Staphylococcus aureus A9765]
 gi|282592747|gb|EFB97753.1| sensor protein srrB [Staphylococcus aureus A9765]
          Length = 582

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 223 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 280

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 281 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 333

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 334 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 367

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 368 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 426

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 427 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 485

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 486 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 545

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 546 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 582


>gi|255010868|ref|ZP_05282994.1| putative two-component system, sensor kinase [Bacteroides fragilis
           3_1_12]
          Length = 537

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 111/514 (21%), Positives = 212/514 (41%), Gaps = 37/514 (7%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYL--QFHNRSFVELWEIDLAFLATNPSN 352
            S +      L   +EIL NL   I + D        + N+       I           
Sbjct: 34  ASADDDYRRFL---FEILDNLPFPIMVKDIQEQFKYTYWNKEAELQSGISRKDAVGFSDA 90

Query: 353 DELLE-FLRSANKLPEQ-----LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
           D   E   +   K+ E        +K  +  + +  K  +T      + +G+    ++ +
Sbjct: 91  DIFGEERGKQYRKIDEDLVKAGKPYKAEERYVTADGKVHDTLVVKSIISSGKLGKWLLVA 150

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
                 + M+E     +  + +    V+ Q   +  +  G+            N   +  
Sbjct: 151 RWEITQLKMYER--ELLAAKEQLEGAVRKQKLALRSIDFGLIYIDR-------NYKVQWE 201

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
             +    L  G H      TC R     D      A   +    +     T     D   
Sbjct: 202 ETSNIKNLVVGRHYI-PGTTCYRTTGRGDKPCKRCAFQEAISTGKMVRHITHVDHVD--F 258

Query: 527 EYSIIPLPNA------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           E +  P+ +         +L F ++T+ ++ +R L E  E   +++ +K++F+ ++S+E+
Sbjct: 259 EITATPVYSDTGGEIIGGLLRFEDITEKLKVDRMLQEAKEKAEESNRLKSAFLANMSHEI 318

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  IIGF+DL+  +       ++ +Y+  +++++ +LL L++DILDL+ ++AG M  
Sbjct: 319 RTPLNAIIGFSDLICQTDDA---EEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMDF 375

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           +Y+   +N+L+ ++   +  K     ++I             DR RL Q+   +++NAM 
Sbjct: 376 SYALTDINELMEDICLQMQQKNQRPGVQILFTEKEPCCVINTDRLRLSQVIINLMNNAMK 435

Query: 701 FSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
           F+++GS + L  +      +  F VK+ G  IP D  + VF RFV        +G GLGL
Sbjct: 436 FTAEGS-ITLGYRLNGQKNELYFFVKDTGIGIPADKAEKVFERFVKLNSF--VKGTGLGL 492

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +I    I   GG + + ++ E       R+P +E
Sbjct: 493 AICRVIIERLGGTIGVDTAVEEGACFWFRLPVQE 526


>gi|168181011|ref|ZP_02615675.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|226950998|ref|YP_002806089.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|182668143|gb|EDT80122.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|226843174|gb|ACO85840.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 469

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++    
Sbjct: 235 NSMAESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVP--EEKQNYYLKLTYE 292

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V  + 
Sbjct: 293 EIQRLTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRASVIKFETKIRDKKLKVNVSLED 352

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  
Sbjct: 353 DKVYVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDI 412

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K +++RF         +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 413 KHIWDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|150008248|ref|YP_001302991.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|255015397|ref|ZP_05287523.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
 gi|298375176|ref|ZP_06985133.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|149936672|gb|ABR43369.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
 gi|298267676|gb|EFI09332.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 846

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 99/529 (18%), Positives = 223/529 (42%), Gaps = 30/529 (5%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            I+ +    GE    ++ +    +  +      I   +     ++D+N  L   N++ ++
Sbjct: 190 DILSIAIERGEVQGLVEHTAMQVMKSETKFKI-IFDKMPWGAELYDENGVLVDINQADLD 248

Query: 338 LWEIDLAF-----LATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           ++ +         +  NP+  + + + L++   +   LN+     +    Y S    K  
Sbjct: 249 IFGVTREQAVGLNMFENPNIPKYVNQSLKNGKDIFFPLNYDFKVASQNGYYDSHHDSKTK 308

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
             L  G TL   +  N  G    +F++    +  E   N+L +++    D     +  + 
Sbjct: 309 HLLVKGVTLKDSLD-NIFGYIYIVFDDTENHIKREQIENSLARLKVSV-DTGDSILWEYD 366

Query: 452 -PDGRIKL---------SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
             + ++ +         +N   +++                      R YN+     L  
Sbjct: 367 VENDKLTVDFGLNEDINNNEGLKAIHDYNFKNQEDYKS-SIHPDDFDRVYNKQFKPLLQG 425

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            I       R+ L G     + +V  Y      +  T    V+ T ++  +R    +   
Sbjct: 426 KINNFVAAYRRILNGKTFWFNSNVRSYK---FNDDGTPNRIVSYTSNITQQREKEIELIK 482

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++AD++K++F+ ++S+E+R+PL  I+GF++++          ++  Y++ I  ++ +LL
Sbjct: 483 VKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAE---IDDEVERQSYLDIIHKNNDLLL 539

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++DILD + ++AG M  ++  + + D+  E+  + + KM   ++ +            
Sbjct: 540 QLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPS-DVVLIFDLGSPSVIVK 598

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +R++Q+ S  ++NA+ F++KGS + +    +       VK+ G  I  +  + +F R
Sbjct: 599 TDERRVMQVISNFVNNAIKFTTKGS-ITIYYEIEGDFIRVCVKDTGIGISAENQRRIFER 657

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+       ++G GLGL+I  + I   GG + + S +   +T    +P 
Sbjct: 658 FIKVDTF--QQGTGLGLTISRTIIEALGGKIGVDSEEGVGSTFWFTLPL 704


>gi|126663362|ref|ZP_01734360.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium
           BAL38]
 gi|126625020|gb|EAZ95710.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium
           BAL38]
          Length = 722

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 134/301 (44%), Gaps = 20/301 (6%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA---------ERA 554
           I   D ERKS Q TL   S  +   SI  +     +   +   + +R           + 
Sbjct: 284 IEQLDKERKSQQKTL-RFSKLISILSIALISILSLLSLSLYKNNKIRTSTNKLLKDKNKE 342

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT + E   +A + +  F+  VS+ELR+PL  I G T LL   K       Q  Y++ + 
Sbjct: 343 LTLEKEKAERASKARADFLSTVSHELRTPLNAINGITYLLLQEK---PKVSQLNYLKSLE 399

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LLN +NDIL++  +++  + +      L +L   +  S    ++ENNI   +  D
Sbjct: 400 FSGNYLLNFINDILEINRLESDKVLIEKINFNLTELSGNITASFKEFINENNINFHLNID 459

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS---TVILKAARDNG-DFIFSVKNNGSS 729
             +      D  +L QI   +L+NA+ FS  G    T+  K+  +N     F + +NG  
Sbjct: 460 NSITYNLKGDPTKLSQILINLLNNAIKFSKDGDVWFTIKKKSETENNVFLYFEISDNGIG 519

Query: 730 IPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++   ++F+ F   +        G GLGLSIV+  + + G  + + S     +T +  
Sbjct: 520 IPKEKQDAIFDSFSQGSVEINRTYGGTGLGLSIVKKILEIMGSQIHLKSESGKGSTFSFE 579

Query: 788 I 788
           +
Sbjct: 580 L 580


>gi|326942456|gb|AEA18352.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 483

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L+G  E + +  L++ + P+ +   +       + +R  + L E  E   + +E +   +
Sbjct: 203 LKGATEKIKEGNLDFQM-PVTSHDEIGQLNQGFEEMR--KKLKESIEVQTQYEENRKELI 259

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S++L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +
Sbjct: 260 SNISHDLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKL 318

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D   +   + T+ LN  + E+ + +   + E  I + +          AD +++ ++ S 
Sbjct: 319 DLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVNLQLHSSPLYVTADCEKINRVISN 378

Query: 694 ILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--Q 750
           ++ N++ +  K    + +  + DN   I  V +NGS I  D    +F RF          
Sbjct: 379 LIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSS 438

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I +  +  HGG +   S     T+I   +
Sbjct: 439 TGGSGLGLAIAKQIVEEHGGGIWAESELGKGTSIFFSL 476


>gi|302771433|ref|XP_002969135.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii]
 gi|300163640|gb|EFJ30251.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii]
          Length = 272

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 120/262 (45%), Gaps = 25/262 (9%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A   L    +A   A + K+ F+ ++S+E+R+P+  I+G + L+  +   SL  +Q + 
Sbjct: 3   KANEELQTSKQAAELASQAKSDFLANMSHEIRTPIHGILGMSALVLGT---SLTDEQKEN 59

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +S  + +LL+++N ILDL  ++AG  ++   +  L+ +L      +  +   +N+R+
Sbjct: 60  MTTVSECAELLLHIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHILQPRAQAHNLRL 119

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR---DNGDFI---- 720
               D  +  F V D  +L Q    ++ NA+ F+  G   V +   R    +   +    
Sbjct: 120 SYEIDSAVPEFLVGDSGKLRQCLLNLVGNALKFTPDGEVRVEVSVHRFGMQDDSVLSRLN 179

Query: 721 -----------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                        + ++G  I ++  K VF  F        R   G GLGL +V+ F+ L
Sbjct: 180 ASQWSDMLEMMLEISDSGIGISKNKLKDVFKPFTQADASISRLYGGTGLGLCVVQRFVEL 239

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
            GGH+ + S     ++    +P
Sbjct: 240 MGGHILVESEYGKGSSFYIVLP 261


>gi|162420651|ref|YP_001608241.1| two-component sensor/regulator [Yersinia pestis Angola]
 gi|165926708|ref|ZP_02222540.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|167402481|ref|ZP_02307936.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167418881|ref|ZP_02310634.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|162353466|gb|ABX87414.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis Angola]
 gi|165921331|gb|EDR38555.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166962875|gb|EDR58896.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048131|gb|EDR59539.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. UG05-0454]
          Length = 891

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 123/256 (48%), Gaps = 9/256 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  +    ER  AL E   A  +A+  K+  +  +S+E+R+PL   +G  +LL
Sbjct: 316 DTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELL 375

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +    L++ Q +  E     S  LL ++N++LD + +++G M L+     L  LL++ 
Sbjct: 376 QNT---PLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA 432

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +I ++    ++ +       +      D  RL QI   +L NA+ F+ +G  + L+  
Sbjct: 433 MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQG-RIQLRVR 491

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R N    F+V++ G  I     +++F  F+        +G GLGL+I ++   + GGH++
Sbjct: 492 RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ--TSDHEQGTGLGLAIADNLAKMMGGHLT 549

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +  +  +P
Sbjct: 550 VFSEPGQGSCFSLCLP 565


>gi|329962433|ref|ZP_08300433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328529989|gb|EGF56877.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1481

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 4/238 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L  K    ++  +IK  F  +VS+ELR+PLT I G  + +  +  G LN ++ + +  + 
Sbjct: 927  LKHKVSVEQQISDIKLRFFTNVSHELRTPLTLIAGPIEQILQN--GHLNHEEKEQLSLVE 984

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +++ +L LVN ILD   +    MK+    I L      + +S      E+ I   + ++
Sbjct: 985  RNTSRMLRLVNQILDFRKIQNNKMKMRVQQIDLIPFTRHIMESFNYLADEHQIDFGLKTE 1044

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   AD  +L +I   +LSNA  ++ +G  +         +   +V++ G  I ED 
Sbjct: 1045 LASLHIWADTDKLEKILFNLLSNAFKYTPQGKQIKTVITETETEVAVTVEDQGIGIAEDK 1104

Query: 735  CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             KS+F RF +   +    +   G+GLS+V+  + +H GH+S+ S     +    R+P 
Sbjct: 1105 QKSLFVRFENLMDKNLFNQSSTGIGLSLVKELVEMHHGHISLHSHPGEGSRFTIRLPK 1162


>gi|187777476|ref|ZP_02993949.1| hypothetical protein CLOSPO_01044 [Clostridium sporogenes ATCC
           15579]
 gi|187774404|gb|EDU38206.1| hypothetical protein CLOSPO_01044 [Clostridium sporogenes ATCC
           15579]
          Length = 469

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 121/234 (51%), Gaps = 3/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               EA+ + +  +  F+ +VS+E+RSP+T+I GF   +    + +   KQ  Y++    
Sbjct: 235 NSMAEAIEQVEINRRLFISNVSHEIRSPITSIKGFIGGILDGIVPA--EKQDYYLKLTYE 292

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            +  L  L+ND+LDL+ ++ G +KLN   I LN+++        TK+ +  +++ V  + 
Sbjct: 293 ETQRLTRLINDLLDLSAIEEGHLKLNLEEIDLNEIIRTSVIKFETKIRDKKLKVNVSLED 352

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                +AD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  
Sbjct: 353 DKVYVIADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDI 412

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K +++RF         +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 413 KHIWDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|312885460|ref|ZP_07745099.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311302040|gb|EFQ79070.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 648

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 164/377 (43%), Gaps = 32/377 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIR---- 481
            K N  ++     I + ++ +        RI   NPA   +     + L   + +     
Sbjct: 132 KKKNEELENYALVIRNSADIICSVDAQNLRILTINPAVEKILNHRPDELKGKSILSLAFE 191

Query: 482 ----NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
               N          E+  + +F     +F D+R++         + ++  +I  +   +
Sbjct: 192 DEQLNFKRKIDEIIKENLFFSVFECRFETF-DKRQTWVECRASYRNKIIFLNISDISPIK 250

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           + +              L +  E      ++K +F+ ++S+ELR+P+  I+G T LLK +
Sbjct: 251 SYM------------EELIKSKELAEYGKKVKETFLANMSHELRTPVNGILGITALLKNT 298

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +   L+S+Q   ++ + +SS  LL ++ND+LD++ ++AG   +      ++ ++  V   
Sbjct: 299 Q---LDSQQKNMIDLLGSSSQSLLGVINDVLDISKIEAGKFNIIRKQGNIHHIVRSVYDL 355

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVILKA 712
           +  K  E ++ + +     + S  + D  R+ QI   +LSNA+ F+ +G    +  +++ 
Sbjct: 356 LKFKTDEKDVELLLDIAPNVPSNVMVDSLRINQIMMNLLSNAIKFTDRGYVKLTVSVVQQ 415

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGG 770
             D     FSV++ G  I  +    +F+ F         +  G GLGL+IV+  + L GG
Sbjct: 416 DVDRVKLKFSVEDTGIGISSENLNKIFDSFEQAEDDTSNKYGGTGLGLAIVKKLVELKGG 475

Query: 771 HVSISSSDEGVTTINCR 787
            +++SS     +  N  
Sbjct: 476 ELTVSSQIGKGSIFNFT 492


>gi|284989871|ref|YP_003408425.1| PAS/PAC sensor signal transduction histidine kinase
           [Geodermatophilus obscurus DSM 43160]
 gi|284063116|gb|ADB74054.1| PAS/PAC sensor signal transduction histidine kinase
           [Geodermatophilus obscurus DSM 43160]
          Length = 408

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 143/384 (37%), Gaps = 31/384 (8%)

Query: 425 LETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
                    +     +D ++E  +     DG +++ NP    +       +     I + 
Sbjct: 36  ATRMLQARAQTMTSVVDAVTEQSIIGTDVDGVVRVWNPGAERMLGLLRADVVRRRSITDF 95

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                       G             + +         ++  +  ++ P  + + +    
Sbjct: 96  -HLAEELLEAGGGLAALVGTAQERGRDVRDWTYVAADGTELTVSVAVTPRTDDRGVHAGW 154

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N   +   E          R  + +K+ FV  +S+ELR+PLT+I+G+ +L+      SL 
Sbjct: 155 NFVGTDMTE---------ARATERMKDQFVSLISHELRTPLTSILGYLELVLDDP--SLG 203

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +  +Y+  +  ++  LL LV D+L  A VDAG   L   ++ L  ++   ++++     
Sbjct: 204 DEPRRYLGTVERNAQRLLRLVGDLLFTAQVDAGRFSLQPESVDLAAVVRAAEETVRVTAA 263

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI 720
              + + V           D  RL Q    ++SNA+ F+  G  V L    A R  G  +
Sbjct: 264 ATGVEVVVDVPDGGLVVPGDAVRLGQACDNLVSNAVKFTPAGGRVTLALRPAWRTAGGAV 323

Query: 721 F-------------SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
                         +V + G  IP      +F RF   +   +    GVGLGL+I  +  
Sbjct: 324 VATPGDDAVRVARLAVSDTGIGIPAGEQGQLFARFFRASTARRHAVPGVGLGLAITRAIA 383

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             H G + ++S +   TT    +P
Sbjct: 384 AAHDGSLEVASVEGRGTTFTLTLP 407


>gi|160894573|ref|ZP_02075349.1| hypothetical protein CLOL250_02125 [Clostridium sp. L2-50]
 gi|156863884|gb|EDO57315.1| hypothetical protein CLOL250_02125 [Clostridium sp. L2-50]
          Length = 1121

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 136/275 (49%), Gaps = 14/275 (5%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + D + +  II L    +++  V +  + R +  L +  +   +A   +++F+ ++S+E+
Sbjct: 465 IDDCITDMIIILL---GSLMLLVVIAWNKRLQIRLKQNAQEAEEAANSESAFLANISHEI 521

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  I+G  +L+      S      +Y  YI  S   LL +++DILDL+ +++G + +
Sbjct: 522 RTPLNAILGMNELVLRE---SRQPHIKEYAMYIKNSGKTLLTIISDILDLSKIESGKVDI 578

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
                 L+ L+ +V++SI  ++ E N++  +     +  ++  D  R+ QI   +L+NA+
Sbjct: 579 IIERYSLSSLIEDVERSIQKRVMEKNLQFNISVSPYMHEYLQGDEVRIKQIIMNLLTNAV 638

Query: 700 DFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
            ++ KG  + L+   ++ D        V + G  + ++    +F +F     +  R   G
Sbjct: 639 KYTEKG-CISLRITGESQDTIQKLFIEVADTGIGMRDEDLGKLFTKFERFDLKRNRSVEG 697

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            GLGL IV+S ++  GG + + S     +T    +
Sbjct: 698 TGLGLPIVKSLLDAMGGTIQVQSVYGKGSTFTVAL 732


>gi|156740179|ref|YP_001430308.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156231507|gb|ABU56290.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 1014

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 166/374 (44%), Gaps = 12/374 (3%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
              +DL     T        +    EG+ +   DG + ++N A   L   +  R   G  I
Sbjct: 647  ESIDLFVAVRTARDQMASILASTREGILLISADGTVAIANAALSELTALDAGRFQ-GMPI 705

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                A    + + +   +  AA+  + DD   +L G  + ++  +   +   L    ++L
Sbjct: 706  DAFLARW--FESAAYATEECAALQRAIDD---ALSGAAQFIAGELSGSAGRFLYLEWSVL 760

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
               +  DS      +     A R+AD ++   +  + ++LRSPL++++   +L+     G
Sbjct: 761  RAQSSGDSHGGVLLVVRDITAAREADRMRQDLMHMIVHDLRSPLSSVMASLELMMRGVPG 820

Query: 601  SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            +L+ +Q   ++  + S+T +L ++N +LD++ ++AG M +      +  ++ +  + +++
Sbjct: 821  ALSDQQLHVLQIANTSATSMLEMINTLLDISRLEAGRMPIERCRGDIRSIIVDAVRRLSS 880

Query: 661  KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
               +  I +++  D  +    AD   + ++   ++SNA+ FS++G  V ++AA    D  
Sbjct: 881  LALDRAISVEIGVDSDIPHIYADVGLVGRVLQNLVSNAIKFSNRGGLVRVQAAVRPEDGQ 940

Query: 719  --FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               + +V + G  I     + +F +F     R  R G GLGL+  +  I  HG  + + S
Sbjct: 941  EKVLVTVSDQGVGIAPGDRERIFAKFSQVGER--RGGTGLGLAFCKQAIEAHGERIWVES 998

Query: 777  SDEGVTTINCRIPS 790
                 +T    +P 
Sbjct: 999  ELGRGSTFFFTLPL 1012



 Score = 44.9 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 9/166 (5%)

Query: 278 KIVRVLNSFGEAGIAID-VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
               V+    +A +AI+ +   + V         IL +    I +   +  +   N +  
Sbjct: 631 DQETVVLFASQAAVAIESIDLFVAVRTARDQMASILASTREGILLISADGTVAIANAALS 690

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           EL  +D       P  D  L     +     +      +    ++  +++          
Sbjct: 691 ELTALDAGRFQGMP-IDAFLARWFESAAYATEECAALQRAIDDALSGAAQFIAGELSGSA 749

Query: 397 GQ-------TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
           G+        L    + +  GG + +  ++T   + +     L+ +
Sbjct: 750 GRFLYLEWSVLRAQSSGDSHGGVLLVVRDITAAREADRMRQDLMHM 795


>gi|325103588|ref|YP_004273242.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324972436|gb|ADY51420.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 715

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 114/234 (48%), Gaps = 7/234 (2%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +  +IK  F+ H+S+E+R+PL +I+GF++ L+ S    L+ +Q + +  + ++S I
Sbjct: 333 EVAIRQTKIKTDFLAHMSHEIRTPLNSILGFSEQLEKS---DLSGEQRKQLVSVQSASQI 389

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLG 678
           LL++VNDILDL+ ++ G + +          + ++  ++     + ++ + V     +  
Sbjct: 390 LLSIVNDILDLSKLETGKLNIQSFPFFPRKTIEDIVSTLKIHADKKHLDLLVNYHFDQHI 449

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  RL Q+   +++NA+ F+  GS  I  A  ++      V + G  I ++  K V
Sbjct: 450 QLNGDEYRLKQVVINLVTNAIKFTKSGSVTINAAINEHCVMRIEVVDTGIGIDKENLKMV 509

Query: 739 FNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F+ F      +   +  G GLGL+I +  I    G + + S     +     IP
Sbjct: 510 FDEFTQILNKSDNNRHNGTGLGLAICKKIIQSQRGFIEVESEIGKGSKFFFEIP 563


>gi|312972515|ref|ZP_07786689.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|310334892|gb|EFQ01097.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|332754418|gb|EGJ84784.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2747-71]
          Length = 595

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 124/268 (46%), Gaps = 11/268 (4%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
            E   +P  +       +        ER      +AL +A   K +F+  +S+ELR+PL 
Sbjct: 59  FEIRKVPYYDRVGKRHGLMGFGRDITER--KRYQDALERASRDKTTFISTISHELRTPLN 116

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+G + +L  ++   L ++Q +Y++ I  S+  L N+ NDI+D+  ++   ++L+   +
Sbjct: 117 GIVGLSRILLDTE---LTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPV 173

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSK 704
                L +++   A +  +  +R  +     L    + D  RL QI   ++SNA+ F+ +
Sbjct: 174 DFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQ 233

Query: 705 GSTVILKAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSI 760
           G  V ++   D GD   F V+++G  IP+D    +F  +         +   G G+GL++
Sbjct: 234 G-QVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAV 292

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
                   GG ++++S     +T    I
Sbjct: 293 SRRLAKNMGGDITVTSEQGKGSTFTLTI 320


>gi|146301096|ref|YP_001195687.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146155514|gb|ABQ06368.1| multi-sensor hybrid histidine kinase/response regulator
           [Flavobacterium johnsoniae UW101]
          Length = 1189

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 20/290 (6%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           + + ++E +  Q  LE  ++ + E S++                       + +K+EAL 
Sbjct: 470 LQASEEELRVQQEELEQTNEELSERSVL----------------LEEKNNEIQKKSEALE 513

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
                K+ F+ ++S+ELR+PL +I+  + LL  +   S+N+++ ++ + I +S   LL L
Sbjct: 514 LTTRYKSEFLANMSHELRTPLNSILLLSRLLSENNNQSMNNEEIEFAKVIQSSGNSLLGL 573

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           +++ILDL+ ++AG M+L +  +   ++ + +         E  I  ++IS         D
Sbjct: 574 IDEILDLSKIEAGKMELEFLDVTTKEITDTLWNLFNFVAKEKGIEFEIISKDAPLVIKTD 633

Query: 684 RQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-FSVKNNGSSIPEDMCKSVFNR 741
           + RL QI   ++SNA+ F+ KG   + +K   D+   I F VK+ G  IP +    VF  
Sbjct: 634 KMRLEQILKNLISNAIKFTEKGKVSLEIKIDTDDDKIICFIVKDTGIGIPLEKQPLVFEA 693

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F       +R   G GLGLSI      L  G + + S     ++    +P
Sbjct: 694 FQQADGSTKRKYGGTGLGLSISRELAKLLRGEIVLHSKVNEGSSFTLCLP 743


>gi|6573136|gb|AAF17564.1|AF201841_1 sensor protein EvgS4 [Escherichia coli]
          Length = 1197

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL        KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVGKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|78048722|ref|YP_364897.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037152|emb|CAJ24897.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1200

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 12/248 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+ KQ  Y 
Sbjct: 817  AWQLAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDLKQRSYT 873

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  +   LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R  
Sbjct: 874  ESIRRAGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFS 933

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
            +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 934  LEI-GLLGDITASGDCTRIRQILLNLLNNAIKFTERG-VVGLKLTTLGSYQGLRFEVADT 991

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F RF             G GLGL+I +      GG + + S     T 
Sbjct: 992  GPGINAEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTR 1051

Query: 784  INCRIPSK 791
                +P +
Sbjct: 1052 FVVDLPLR 1059


>gi|225862628|ref|YP_002748006.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225786705|gb|ACO26922.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 456

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKETTS 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 267 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSHIRISVIEENKHIT 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITIEDEGEGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|152983814|ref|YP_001346548.1| two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150958972|gb|ABR80997.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 1215

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 162/391 (41%), Gaps = 23/391 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             +    +  ++ +E   +  ++      D +   + V   +GR+   N ++ S      
Sbjct: 552 VTYQRRQIRDRLRVEQALSDQLQFVEALTDSMPPPLYVRDANGRMLSCNRSYLSSVGLVA 611

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYS 529
            ++   T +           N   G       + +  D R  +S+   +       +++ 
Sbjct: 612 EQVLNRTVLE------LPMENFETGPQFHRNYLEAMRDGRTIESVHEVVLGGRKCWIDHW 665

Query: 530 IIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           I P  +A       +  ++++++  +    L E      +A   K +F+  +S+E+R+P+
Sbjct: 666 IQPFRDANGTVRGVICGWLDISEHRKLVAELKEAKNLADEASRAKTTFLATMSHEIRTPM 725

Query: 585 TNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
             +IG  +L LK +  G ++      +E   AS+  LL L+ DILD+A +++G + L+  
Sbjct: 726 NAVIGILELALKRADTGRVD---RSSIEIAYASAKSLLELIGDILDIARIESGRLGLSPK 782

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFS 702
              L +L+  V +       +  + + +  D  + G  + D  R  QI S ++SNA+ F+
Sbjct: 783 RANLRELVESVARVFEGLARQKRLSLILDIDASINGDVLLDAMRFKQILSNLVSNAIKFT 842

Query: 703 SKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLG 757
            +GS  + +         +     V++ G  I     + +F  F       Q   G GLG
Sbjct: 843 DEGSISIRIDGHLVEPSLLQVNLCVEDTGIGISLGDQQQLFRPFAQVERNVQNTEGTGLG 902

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L I  S   + GG + +SS+    T ++  +
Sbjct: 903 LVICRSLCEMMGGRLVMSSALGQGTRVDVEL 933



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGI 231
              ++ +     + LS+ +   + L DS+   ++ RD  G +L  N SY  +     E +
Sbjct: 555 QRRQIRDRLRVEQALSDQLQFVEALTDSMPPPLYVRDANGRMLSCNRSYLSSVGLVAEQV 614

Query: 232 VFQKAIGESRKLFKEEIK-KRMISSSALEKNFCETVSTLEHGNN-----KSYKIVRVLNS 285
           + +  +    + F+   +  R    +  +    E+V  +  G          +  R  N 
Sbjct: 615 LNRTVLELPMENFETGPQFHRNYLEAMRDGRTIESVHEVVLGGRKCWIDHWIQPFRDANG 674

Query: 286 F--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              G     +D+S+   +  +L     +    + A   F
Sbjct: 675 TVRGVICGWLDISEHRKLVAELKEAKNLADEASRAKTTF 713


>gi|167034739|ref|YP_001669970.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida GB-1]
 gi|166861227|gb|ABY99634.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida GB-1]
          Length = 643

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 115/253 (45%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+    L+S+Q
Sbjct: 243 EQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETT---PLSSEQ 299

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y    S S+  LL ++NDILD + ++   ++L +    L +L+    QS      +  
Sbjct: 300 ADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDFNLGELITSSVQSFQHSAQQRG 359

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDF 719
           + + +      +      D  R+ QI   ++ NA+ F+ +G  V ++A      R     
Sbjct: 360 LGLHLELPAGFEQLQVNGDPTRIRQILLNLIGNALKFTERG-QVQVEARWQVLDRQLIWL 418

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SV++ G  I  D  + +F  F         +  G GLGLSI  +     GG +   S 
Sbjct: 419 TCSVRDTGIGIDSDRLEMMFIAFQQADSSISRRYGGTGLGLSIARTLAERMGGKLRGESR 478

Query: 778 DEGVTTINCRIPS 790
           +   +T    +P 
Sbjct: 479 EGLGSTFTLEMPL 491


>gi|162418891|ref|YP_001605672.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Angola]
 gi|162351706|gb|ABX85654.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis Angola]
          Length = 778

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 147/371 (39%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y++ I  S+  L N+ NDI+++  ++   ++ +   +     + +++      
Sbjct: 313 LDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQFDNQPVDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    +AD  RL QI   ++ NA+ F+ +G  V+      N   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +       G R   G G+GL++ +      GG +++ S+
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGVGSCFTLTI 503



 Score = 41.5 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|256842285|ref|ZP_05547789.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736169|gb|EEU49499.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 622

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 94/414 (22%), Positives = 179/414 (43%), Gaps = 33/414 (7%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL------------VKVQGETIDHLSEGV 447
             + +        I    N++  V+ E     L            + +Q   I   S   
Sbjct: 213 FKLRLVPVHDRYVIIYIRNVSELVEQEKANEALSSKLSESRMMMELALQNSKITTYSFNF 272

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
           + F    ++   N  F   + T  + L     I           +  D + LF  I T+ 
Sbjct: 273 SRFKSCDKV-HCNRCF-QFYGTTNSLLKRNQFICQALPQLRHPDDSGDFFYLFNTIRTNK 330

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQ--------TMLTFVNVTDSVRAERALTEKN 559
            DE K +   L+   ++   Y +I   + +         +   ++  + +  E  L    
Sbjct: 331 LDEYK-IDFRLKNDDNTYRIYEVIGKTHEKDENGFPNLIVGCMIDDQERLEFEEDLILAK 389

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   +AD +K++F+ ++++E+R+PL  I+GF+DLL   +   L   +  Y+  I  ++ +
Sbjct: 390 EKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSEL---RQNYISLIKMNNDL 446

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL++VND+LD++ +++ +M   Y  + L   + ++  SI  +  E  + + + +   +  
Sbjct: 447 LLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPE-GVEMTLDACPDII- 504

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVKNNGSSIPEDMCKS 737
           F  DR RL QI   +L+NA+  + KG  +        +     F V + G  IP+D   +
Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKG-RIWFGYTLEAEEKMIKFYVSDTGCGIPKDELDN 563

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F RFV  +   Q  GVGL L+I +  +   GG++S+ S +   +T    +P K
Sbjct: 564 IFARFVQLSDFEQ--GVGLELAICKGLVLKMGGNISVISEEGFGSTFIFTLPMK 615


>gi|56475846|ref|YP_157435.1| complex regulator protein [Aromatoleum aromaticum EbN1]
 gi|56311889|emb|CAI06534.1| probable complex regulator protein containing response regulator
           receiver and signal transduction histidine kinase
           domains [Aromatoleum aromaticum EbN1]
          Length = 1205

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 12/292 (4%)

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           +E +  Q  L+  ++ + E +   +   Q         +   A   L  K + L +    
Sbjct: 478 EELRVQQEELQQSNEELEERA--QMLETQRENIRAKNREIKLAAEDLRVKAQELERVSAY 535

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+ELR+PL +++  + LL  +K G+L+ KQ ++   I ++ T LL+L+NDIL
Sbjct: 536 KSQFLANMSHELRTPLNSLMILSSLLMQNKDGNLSEKQVEFASTIHSAGTDLLDLINDIL 595

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           DL+ ++AG ++L+++ I + DL   ++    ++  +  I   V  +  +  +F  D QR+
Sbjct: 596 DLSKIEAGRIELDFADIAVEDLSTSMRSLFQSQAEQKRIAFSVEVEADVPRTFHGDTQRV 655

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKNNGSSIPEDMCKSVFN 740
            QI   ++SNA+ F+  G   +                  F+V + G  IP D  + +F+
Sbjct: 656 HQILKNLVSNALKFTEHGEVRLCVTFPSGSANPLPVPAIAFAVSDTGIGIPADKQQGIFD 715

Query: 741 RFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F         +  G GLGLSI         G + +SSS+   +     +P 
Sbjct: 716 AFQQADGSISRKYGGTGLGLSISLELARRMHGDIRMSSSESKGSVFVLYLPL 767


>gi|313157976|gb|EFR57382.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 474

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 126/251 (50%), Gaps = 4/251 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +    ++ D   +E  L    +  R++D +K++F+ ++S+E+R+PL  IIGF +LL +
Sbjct: 204 RIVGICQSIHDHKISEDGLRAARDKARESDRLKSAFLANMSHEIRTPLNAIIGFANLLTS 263

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             +    +++ +Y   I+++   LL L++DILDL+ +++  M+ ++    L+ LL ++ Q
Sbjct: 264 EDIPFSEAEKQEYSRLITSNGDQLLRLISDILDLSKIESNTMEFHFGEHSLHALLTDIYQ 323

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARD 715
           +    M E  +R+++         V D  RL Q+ + +++NA  F+  GS     ++ + 
Sbjct: 324 AQRLCMPE-GVRLRLDMPQADTPIVTDASRLKQVVNNLINNAAKFTDDGSITFGFRSPQG 382

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                  V + G  I ++    +F RF         +GVGLGLSI  +     GG +S+ 
Sbjct: 383 CEQVELFVHDTGKGIAQEHLDRIFERFYKADSF--VKGVGLGLSICRTITEYLGGAISVE 440

Query: 776 SSDEGVTTINC 786
           S     T    
Sbjct: 441 SESGKGTRFTI 451


>gi|329890253|ref|ZP_08268596.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845554|gb|EGF95118.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 839

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 147/375 (39%), Gaps = 20/375 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           DL      L +++    D   EG     P  R+  +   F S    E   +         
Sbjct: 319 DLAGARRDLERLR----DLAPEG--AVDPTERLLEAELLFGSGRPREGFEILREYQRERD 372

Query: 484 AATCSR-----YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                R     +    D     A      +  R + Q    ++     +  I+ +     
Sbjct: 373 LHLSRRFSAGIHQVTGDMQQQLAERRRQLETARANTQLQQAVIRG---QNWILAISLVFV 429

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   + +    R  R L +       A+  K+ F+ ++S+E+R+PL  ++   ++L T  
Sbjct: 430 LSVLLVLLWQRRQSRRLKKAQLHAEAANRAKSEFLANMSHEIRTPLNGVVAMAEVLTTR- 488

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L  +  + V+ I +S   L  L++DILD+A +++G + ++ +   L  +  +V    
Sbjct: 489 --DLPERDRELVDIIRSSGVTLERLLSDILDVARIESGQVAIDPAPFDLEQVTRDVVALW 546

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A       + +++  D  L    + D  RL Q+ + ++SNA+ F+ +G+  +     +  
Sbjct: 547 APLALGKGVELRLDYDPTLPRLVIGDAVRLRQVLTNLISNALKFTQEGAVTLEAVQGEGE 606

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              F+V + G     +    +F+RF        R   G GLGL+I +  + L GG +   
Sbjct: 607 RVRFTVTDTGIGFDAEFKSRIFHRFQQEDGSITRQFGGSGLGLAISDDLVRLMGGELDCE 666

Query: 776 SSDEGVTTINCRIPS 790
           S  +G       +P 
Sbjct: 667 SPPQGGARFWFDLPL 681


>gi|254502891|ref|ZP_05115042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222438962|gb|EEE45641.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 807

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 152/376 (40%), Gaps = 11/376 (2%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D   +     +     +  L + V      G I  +N A   ++  +            I
Sbjct: 149 DQAWELGESDERHASILGTLGDVVIRRDQAGMITYANSAADDVFGKDHELQPGRLMQLPI 208

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
           A   +    + D        I   D   ++ QG     S   +                 
Sbjct: 209 ANKVAGEIFDLDAPAENNGGIGFGDLRLRTAQGE-RWFSRIDIPVRDTATDRQLVQTVLR 267

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +VT+    E  L     +   ++E K+ F+  VS+E+R+PL  ++G   LL+ ++   L 
Sbjct: 268 DVTERRLIEEELLAARHSAETSNEAKSRFLATVSHEIRTPLNGVLGMAALLRDTR---LT 324

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +QS Y++ +  S   LL L++++LD + V+AG + ++ + I +  L   V + +A K H
Sbjct: 325 KEQSAYIKALETSGETLLLLIDEVLDFSKVEAGKLDIHAAPIKVGALAESVVELLAPKAH 384

Query: 664 ENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST-VILKAAR--DNGDF 719
             ++ I  + D +L   V  D  R+ QI   ++ N + F+  G   V L      + G F
Sbjct: 385 AKHLEIGTLIDSRLPEHVTLDATRVRQILFNLIGNGVKFTDDGGVAVELHGRPNLEGGSF 444

Query: 720 I-FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISS 776
           +   V++ G     D  + +F  F    H    +  G GLGL+I +   +L GG +S   
Sbjct: 445 LDLVVRDTGIGFAADEAERLFQEFEQVDHGPARKFGGTGLGLAIAQRLAHLMGGGISARP 504

Query: 777 SDEGVTTINCRIPSKE 792
           + EG       +P  E
Sbjct: 505 ASEGGALFEVSLPIPE 520


>gi|23011796|ref|ZP_00052052.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 770

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 115/237 (48%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 287 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 344

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++   + I L D L ++   +  +     +  +    
Sbjct: 345 RSAQHLSGLIDGLLDISRMEAGRLQTYRNEIRLADFLAQIVDMVRLQAEAAGLSFRFTRP 404

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+++G  V L+ +  +   +FS+++ G  IPE 
Sbjct: 405 DTLPAVVATDEKRLRQILLNLLSNAIKFTAEGE-VALEMSYRSQVAVFSIRDTGLGIPEA 463

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F   +        G GLGL+I      + GG +++ S     T    R+
Sbjct: 464 DLARIFEPFERGSMPAARAAPGTGLGLTIAHLLAQVMGGEITVESRVGEGTCFRVRL 520


>gi|283770562|ref|ZP_06343454.1| two-component system OmpR family sensor histidine kinase ResE
           [Staphylococcus aureus subsp. aureus H19]
 gi|283460709|gb|EFC07799.1| two-component system OmpR family sensor histidine kinase ResE
           [Staphylococcus aureus subsp. aureus H19]
          Length = 582

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 223 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 280

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 281 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNTRFFVVTTSYIDK------- 333

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 334 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 367

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 368 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 426

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 427 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 485

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 486 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 545

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 546 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 582


>gi|256420269|ref|YP_003120922.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256035177|gb|ACU58721.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 368

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 126/271 (46%), Gaps = 10/271 (3%)

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            +     +I+PL   + +   V    S + E       + LR+ +E +  F+ ++S+EL+
Sbjct: 100 REEFFNKNILPLKTIEEVSEDVEKWASQKKEE-----LDNLRRNEEFRKEFLLNLSHELK 154

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  + G+   L    L   N     +++  + +   L  L++D+ +++ +++G M +N
Sbjct: 155 TPIFAVQGYIHTLLDGALEDPNVN-KLFLKNATKNIDRLCRLIDDLDEISKLESGEMTIN 213

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMD 700
               V+ DL+ +V  +++ K +   I+  V          +AD++++ Q+   ++ N++ 
Sbjct: 214 AENFVIQDLIKDVFDTLSLKANTKGIKFNVKKGCEAPIHVLADKEKVRQVLINLVDNSIK 273

Query: 701 FSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLG 757
           +    G TV      D+   +  + ++G  I E+    VF RF        R   G GLG
Sbjct: 274 YGRTDGHTVASIYVMDDKRVLMEISDDGIGIAEEHLPRVFERFYRTDRARSRDIGGTGLG 333

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+IV+  I  HG  ++I S  E  +T    +
Sbjct: 334 LAIVKHIIEAHGQTINIRSKPEIGSTFGFTL 364


>gi|237738106|ref|ZP_04568587.1| two-component sensor histidine kinase [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419986|gb|EEO35033.1| two-component sensor histidine kinase [Fusobacterium mortiferum
           ATCC 9817]
          Length = 613

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 164/370 (44%), Gaps = 26/370 (7%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +  T  +     ++ +S+G+ V   +  I L N A   L   EE  L     +  I   
Sbjct: 257 KRLMTEKRKAEAIVESISDGIIVTDMENNIILVNRAAEELLNIEEKELLKQPFLHAI--- 313

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                N    +D    I+ + + +    Q  + L    ++ Y             F+N  
Sbjct: 314 -----NNKKIYDSVQEILNNDEIKSTMKQLEISLNKGELITY----------CKVFINSI 358

Query: 547 DSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            S   ER     L +     ++ D++K++FV  VS+E R+PLT+I    +LL    +G L
Sbjct: 359 ISKNGERLGIVILLQDITKAKELDQMKDNFVSTVSHEFRTPLTSIGMAVELLSDKSIGEL 418

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N  Q + V  I   +  L  L+ D+LDL+ +++    +N+    +  +++   + +    
Sbjct: 419 NDIQKELVTAIKLDNDRLKLLIKDLLDLSRLESRKTPMNFQECDIKKIIDFAIKPLRNLC 478

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFI 720
              N+ +++ +       +AD  ++  + +  + NA+ +  +G    ++++A + + + +
Sbjct: 479 ENKNVTLELGNIDNSTPVIADFNKISVVLTNFIGNAIKYGKEGEPNHILVEAFKKDENLV 538

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            +VK+ G  IP+D  + +FN+++    ++ G+  G GLGLSI +  I  H G + + S  
Sbjct: 539 VAVKDEGRGIPQDQLEKIFNKYIQVKVSNDGKIEGTGLGLSISKEIIKNHNGEIWVDSKL 598

Query: 779 EGVTTINCRI 788
              +T    +
Sbjct: 599 GKGSTFYFSL 608



 Score = 40.7 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 76/240 (31%), Gaps = 33/240 (13%)

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           +      I+ +++  I + D    +   NR+  EL  I+   L   P    +        
Sbjct: 262 EKRKAEAIVESISDGIIVTDMENNIILVNRAAEELLNIEEKELLKQPFLHAINN------ 315

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL--------HVIVTSNPRGGTIWM 415
               +  + + +E + +    S   +    L  G+ +         +I  +  R G + +
Sbjct: 316 ----KKIYDSVQEILNNDEIKSTMKQLEISLNKGELITYCKVFINSIISKNGERLGIVIL 371

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
            +++T   +               +D + +                   ++    +  + 
Sbjct: 372 LQDITKAKE---------------LDQMKDNFVSTVSHEFRTPLTSIGMAVELLSDKSIG 416

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               I+    T  +  N+     +   +  S  + RK+     E     +++++I PL N
Sbjct: 417 ELNDIQKELVTAIKLDNDRLKLLIKDLLDLSRLESRKTPMNFQECDIKKIIDFAIKPLRN 476


>gi|167583130|ref|ZP_02376004.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia thailandensis TXDOH]
          Length = 1108

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 94/382 (24%), Positives = 166/382 (43%), Gaps = 31/382 (8%)

Query: 425 LETKYNTLVK-VQGETIDHL-----SEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPG 477
           L   Y    + ++ E ++HL       G+ +    +  I ++N   RS+           
Sbjct: 352 LTRTYAEASRALESEMLNHLLVHATPVGLCIVRRKNLEIMVANQIARSVLGLTS------ 405

Query: 478 THIRNIAATCSRYYNESDGWDLFAA----IITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              R   A CS +  +     L           F  ER+     LE      + Y+   L
Sbjct: 406 ADTRLPEALCSEFSMQRGEDALLNRNSHIYQFPFSLEREPHDVHLE------ITYAPARL 459

Query: 534 PNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            + +       ++T+  RAE+ L E       A + K +F   +S+E+R+PL++++G  +
Sbjct: 460 SHEEVFFCAIADMTEHHRAEQVLREAKLTTEAAAKAKVNFFASMSHEIRTPLSSLVGNIE 519

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+    LG L  +Q + V  +  S+  LL +VND+LD + +D G + L+     + +LL+
Sbjct: 520 LVA---LGPLAPEQRERVRAMQVSAEGLLQVVNDVLDFSKIDIGELSLSEEWRSMTELLS 576

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +  S A       +++ +  D  + +    D  R+ QI + +LSNA  F+  G  + L+
Sbjct: 577 RLAASYALLATRQGLKLYLNFDRTIPTRLHFDPVRVSQIINNLLSNAFKFTQSG-KITLR 635

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHG 769
           A     +   SV ++G  IP+ +   +F  F         Q RG GLGLSI      L  
Sbjct: 636 ARWTEPNLEISVIDSGIGIPDALRDRLFQPFTQGDSNRLAQARGTGLGLSICARLCELMN 695

Query: 770 GHVSISSSDEGVTTINCRIPSK 791
           GH+++ S+    T I   +P +
Sbjct: 696 GHIALDSAVGVGTHITVTLPLR 717


>gi|15602178|ref|NP_245250.1| hypothetical protein PM0313 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720549|gb|AAK02397.1| ArcB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 618

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 7/249 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + V AE+ L+   + + K    K   +  +S+ELR+PL  IIG + +L   K   L   Q
Sbjct: 100 ERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEK---LTETQ 156

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ I  S+  L ++ +DI+DL  +DA  ++LN   + LN  LN++         +  
Sbjct: 157 QNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQKK 216

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-DFIFSVK 724
           +  ++++D  L   F+ D  RL QI   ++ NA+ F+ +G  + L   R +     FSV 
Sbjct: 217 LAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEG-RITLNVKRVSEYQISFSVS 275

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           + G  IP +    VF  +      G +  G G+GL+I ++   L GG +  +S     + 
Sbjct: 276 DTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSC 335

Query: 784 INCRIPSKE 792
               +P KE
Sbjct: 336 FTLMLPVKE 344


>gi|75416541|sp|Q9L523|SRRB_STAAU RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|7839534|gb|AAF70313.1|AF260326_2 SrrB [Staphylococcus aureus]
          Length = 583

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNTRFFVVTTSYIDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 428 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 583


>gi|150019733|ref|YP_001311987.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906198|gb|ABR37031.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 581

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 97/539 (17%), Positives = 213/539 (39%), Gaps = 48/539 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF--------L 346
           +S    + D     YE  + L  AI +  +   + F N    +L               L
Sbjct: 13  ISDIGNIVDIDNKNYEYFNFLPYAILVQ-RGGKIVFANDELRKLLHCSDESVLGKSIVSL 71

Query: 347 ATNPSNDELLEFLRSANKLPEQ----LNWKT-----------------WKENIFSVYKSS 385
               S+    + +  + K+ E      ++++                 W E       + 
Sbjct: 72  LQLKSDAIFSDSINESFKVIEGEHKIKDFQSNIIDVDIKCNIKQLNNCWYEFFVLRDTTI 131

Query: 386 ETHKDTWHLPNGQTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLVKVQGETI 440
           +  K T  +   +    I+   P  G           + + + +L+ K     ++  + I
Sbjct: 132 KKKKYTDAIKKAEKYTDILEGLPIVGMGKERVGITIRDASERGELQEKLFESKELYKKLI 191

Query: 441 DHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
           D L +GV++   DG      + ++  +   +  +   G  +  + +  +    +    +L
Sbjct: 192 DILPDGVSI--HDGITYSFVSDSYARMLGYDNTKELVGKRLDEVVSKENHELIKRQVENL 249

Query: 500 F--AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
                +    + +  + Q   +    + + +      N   + +  ++TD  R E +   
Sbjct: 250 LYKDKMFQRAEYKFITKQNIYKDFESTSIRFWYNNKLN--ILSSIRDITDKKRIEES-RL 306

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN---SKQSQYVEYIS 614
             E   + D++K  F  ++S+ELR+PL  ++    L+  +     N   S   +Y   + 
Sbjct: 307 LLERAIEYDKLKTEFFSNMSHELRTPLNILLSSLQLINMNTDTKGNINLSSIRKYTGIMK 366

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +   LL L+N++LD+  +D+G   LN     +  ++ ++  S+A  + E  I I   +D
Sbjct: 367 QNCYRLLRLINNLLDITKIDSGFYTLNICNHDIVRIVEDITLSVAEYVKEKGIEIIFDTD 426

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +      D  ++ ++   +LSNA+ F+  G  + +           +V++ GS IP++ 
Sbjct: 427 IEEKVLGFDADKIERVILNLLSNAVKFTKSGGKIDVSIQDLADYIYITVRDTGSGIPKNK 486

Query: 735 CKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             S+F+RF+        +  G G+GL++V+S +++H G +++ S     T  N  +P+K
Sbjct: 487 LNSIFDRFIQVDKSLSRRSEGTGIGLALVKSLVDMHRGSITVESEYGEYTQFNIILPAK 545


>gi|325110130|ref|YP_004271198.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324970398|gb|ADY61176.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 538

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 11/256 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  +     + L     A   A+  K++ + ++S+E+R+P+T ++G  D+L  S   SLN
Sbjct: 131 NAIERHVLMKRLKNSERAADSANRAKSALIGNISHEIRTPMTAVLGLCDVLLQS---SLN 187

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   +  I  + + L+ +VND+LD++ ++A ++++    I L D L+++   +  + +
Sbjct: 188 DDQRNLLSMIRDNGSYLVEIVNDLLDISKMEADMLEIKPLAINLRDFLDDLISIMGVRAN 247

Query: 664 ENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           EN+  + V  +D       AD  RL QI   +LSNA+ F+  G  V L+A     D    
Sbjct: 248 ENSTTLDVGFADDVPEWIFADPIRLRQILLNLLSNAIKFTPNG-KVRLEAQNAGNDSQNL 306

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             F V++NG  IP++  +++F  F+ +      + RG GLGLSI    I   GG + + S
Sbjct: 307 IRFVVEDNGCGIPQEDLENIFLPFMQSGTDLANRSRGTGLGLSICRRLIVAMGGRIDVES 366

Query: 777 SDEGVTTINCRIPSKE 792
             +  ++    +P  E
Sbjct: 367 VIDEGSSFTITLPLVE 382


>gi|228989787|ref|ZP_04149767.1| hypothetical protein bpmyx0001_5560 [Bacillus pseudomycoides DSM
           12442]
 gi|228995977|ref|ZP_04155633.1| hypothetical protein bmyco0003_5730 [Bacillus mycoides Rock3-17]
 gi|229003594|ref|ZP_04161410.1| hypothetical protein bmyco0002_5670 [Bacillus mycoides Rock1-4]
 gi|228757636|gb|EEM06865.1| hypothetical protein bmyco0002_5670 [Bacillus mycoides Rock1-4]
 gi|228763750|gb|EEM12641.1| hypothetical protein bmyco0003_5730 [Bacillus mycoides Rock3-17]
 gi|228769934|gb|EEM18517.1| hypothetical protein bpmyx0001_5560 [Bacillus pseudomycoides DSM
           12442]
          Length = 418

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 106/251 (42%), Gaps = 5/251 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L    + ++ F+  V++ELR+PLT + G+ D+   +   
Sbjct: 168 TSTRNDEIGELAGSIQTLANDLHYMKKERSEFLASVAHELRTPLTYVRGYADIAMKN--S 225

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   +  + NLV D+  LA ++     +    + L   L+ +   +  
Sbjct: 226 TPPEQRQKYLSIIKDEADYITNLVQDLFLLAQMEKHNFSIQAKEVHLQTFLSRIVTKVNI 285

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
                +I +       L S   D QR  Q+   IL+NA   S + S + +          
Sbjct: 286 MYEAKHIIVSSTCPSSL-SIALDEQRFEQVIINILNNAYVHSPEHSRITISVTEHKTQLE 344

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IPE+    +F RF            G GLGL+IV+  + LHGG ++++S  
Sbjct: 345 IAIQDTGEGIPEEDIPHIFERFYRVDKARSRSTGGTGLGLAIVKEIVELHGGEITVTSEV 404

Query: 779 EGVTTINCRIP 789
              +     +P
Sbjct: 405 NQGSCFTMSLP 415


>gi|319939369|ref|ZP_08013729.1| histidine kinase [Streptococcus anginosus 1_2_62CV]
 gi|319811355|gb|EFW07650.1| histidine kinase [Streptococcus anginosus 1_2_62CV]
          Length = 450

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 139/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L         K     + ++++GV      G+I + N         +E+  
Sbjct: 75  INDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIIMINDMATKQLGVKESEA 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                +        +  +  D +DL   I    +    S     E LS  V  +++I   
Sbjct: 135 RKMNIL--------KLLDIEDEYDLRDLITKVPELTIDSQDENGEFLSLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V+D+L L+ +D     L+         +  +
Sbjct: 235 DEGALS--EPVAPDFIKVSLDETNRMMRMVSDLLSLSRIDNATSHLDIELTNFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   ++  +    I             D  +++Q+   I++NA+ +S  G  + + 
Sbjct: 293 LNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKMIQVIDNIINNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  H 
Sbjct: 353 MKTTDTQMILSISDEGLGIPKKDLPKIFDRFYRVDKARSRAQGGSGLGLAIAKEIIKQHN 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|317129754|ref|YP_004096036.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474702|gb|ADU31305.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 475

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 117/250 (46%), Gaps = 6/250 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R   ++    + L++  + +  F+ H+S++LR+P+T I G++ ++K +         
Sbjct: 225 EVSRLANSIQSMTKQLKQYRDSRRHFISHISHDLRTPITYIKGYSAVMKDTVKDDK-DDW 283

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  I   +T + NLV+D+  L  ++ G +KL    + +   L  + +S A   ++ N
Sbjct: 284 KQNLNVIYKEATRMENLVSDLFLLTKLEEGKIKLEKEKVPVASWLKSIYESRALMFNQKN 343

Query: 667 I--RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           I  R+ +    K      D  RL Q    I+ NA+  + K   + L   + +   IFSV+
Sbjct: 344 IKHRLNIQDACKELIVFMDAYRLEQAIINIVENAIRHTPKEGEIELSLYKKSEQIIFSVR 403

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           + GS I       ++ RF        R    G GLGL+IV+  +  HGG V ++S     
Sbjct: 404 DTGSGINNKDLPHIWERFYKADTSRNRVINGGTGLGLAIVKEIVEAHGGKVKVASKVGEG 463

Query: 782 TTINCRIPSK 791
           TT +  +P +
Sbjct: 464 TTFSIYLPLQ 473


>gi|228938515|ref|ZP_04101123.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971394|ref|ZP_04132020.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978007|ref|ZP_04138386.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407]
 gi|228781668|gb|EEM29867.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407]
 gi|228788261|gb|EEM36214.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821113|gb|EEM67130.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 466

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 134/291 (46%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  + I    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKELHISTNLNPEII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV+  +++HGGH  I S  +  TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGHWKIESEKDKGTTVIIKL 457


>gi|117618265|ref|YP_855448.1| aerobic respiration control sensor protein ArcB [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117559672|gb|ABK36620.1| sensor histidine kinase/response regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 770

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 143/374 (38%), Gaps = 18/374 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   +        +    ID   + V     D +    N A   L    E  L   T   
Sbjct: 143 REKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELTGKVEAELIGLTPFD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                 +    E+D          +++   +   G       +  E   +P  +      
Sbjct: 203 VYKHDIASKVVETDKQVFAQNEPLTYEQWLEYPDG-----RKAYFELRKVPFFDRFGKRL 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER   +  + L KA   K +F+  +S+ELR+PL  I+G + +L  +    
Sbjct: 258 GLLGFGRDITER--KQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDT---P 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ KQ Q ++ I  S+  L N+ NDI+DL  +D   +++  + I L   L+E++     +
Sbjct: 313 LDPKQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETLSRIQ 372

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-- 718
             +  + +    DG +  FV AD  RL Q+   ++ NA+ F+ +G  V ++      D  
Sbjct: 373 AEQKGLYLHFDRDGDVPQFVMADGTRLRQVLWNLVGNAVKFTDEGG-VTVRCLTHPADTP 431

Query: 719 ----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 F V++ G  IP    + +F  +     +    G G+GL++    +   GG + +
Sbjct: 432 GKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGQLYV 491

Query: 775 SSSDEGVTTINCRI 788
            S           +
Sbjct: 492 DSDPGEGACFTAEL 505



 Score = 45.7 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 75/202 (37%), Gaps = 19/202 (9%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQ---NDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
                +L++   KL+   +  DL   +Q   N   +  +   +     LR  +++ + +E
Sbjct: 81  EDSRQRLTRMVRKLQDMRER-DLELNSQLQENISRLNAQIAETNRAETLRQQAIEDLENE 139

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           + +       L    ++ +   D    LV++R++       N + ++ T   G V  + I
Sbjct: 140 VFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELT---GKVEAELI 196

Query: 238 G-ESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL------NS 285
           G     ++K +I  +++ +        E ++         G    +++ +V         
Sbjct: 197 GLTPFDVYKHDIASKVVETDKQVFAQNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKR 256

Query: 286 FGEAGIAIDVSKEITVNDQLTH 307
            G  G   D+++     D+L  
Sbjct: 257 LGLLGFGRDITERKQYQDKLEK 278


>gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1014

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 115/242 (47%), Gaps = 5/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A     ++ E L + D  K +F  +VS+E R+PLT ++G  + +  S  G+L    ++ 
Sbjct: 351 QAYEEERKRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLAS--GTLPEAAARE 408

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++T LL LVN +LD + ++AG ++ ++  + L     ++  S  +      + +
Sbjct: 409 LDVVHRNATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSFRSVAERAGLTL 468

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V        F  DR+   +I   +LSNA  F+ +G T+ ++     G     + + G+ 
Sbjct: 469 TVDCPPLPAPFYVDREMWEKIVLNLLSNAFKFTFQG-TITVRLRARTGQAWLEILDTGTG 527

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    +F RF     A      G G+GL++V+    L GG V + S +   +     
Sbjct: 528 IPPEDLPHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVESVEGQGSCFTVV 587

Query: 788 IP 789
           +P
Sbjct: 588 LP 589



 Score =  234 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 123/303 (40%), Gaps = 5/303 (1%)

Query: 490  YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
               E     L   +       R   +  +E L      Y + P    + +    +  +  
Sbjct: 711  LLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARVCSTLELS 770

Query: 550  RAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            R  R       + EAL++A ++++ F+   S+EL++PL       +L++ S         
Sbjct: 771  RMRRESSLQEARAEALKRAVQVRDEFLSIASHELKTPLMAFRLQLELIERSLGPESRLSL 830

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +  +         L  LV  +LD++ +  G + L+   + L +++ E  + +   +    
Sbjct: 831  ASRLSVAGRQVQRLNTLVETLLDVSQLSMGRLMLHLEEVDLAEVVGETVEQLRGSLERAG 890

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              + V  +  L     DR R  ++   +L NA+ +  +G  + ++A ++ G    +V + 
Sbjct: 891  CSLTVEVERPLVGRY-DRVRFERVVMNLLDNALKYG-EGKPLRVRAWKEQGISRLTVADQ 948

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            G  I  +    +F RF       Q  G+GLGL I    +  HGGH+ + S+    TT   
Sbjct: 949  GMGISPEDQARIFERFERAVPGRQYGGLGLGLWIARQVVEAHGGHIQVDSTPGQGTTFTV 1008

Query: 787  RIP 789
            +IP
Sbjct: 1009 QIP 1011


>gi|310817566|ref|YP_003949924.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390638|gb|ADO68097.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 510

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 119/269 (44%), Gaps = 9/269 (3%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y   P   A+ + T  ++     AER L  + + L  AD  K+ F+  +++ELR+PL  I
Sbjct: 107 YLTQPFEPAELIATVRSLLRLRHAERELRVRADQLTAADRRKDEFLAMLAHELRNPLAAI 166

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +    +L+      +  K+++    I   +  L  LV+D+LD++ +  G ++L    +  
Sbjct: 167 MTAIGILERKPTDDV--KEARMRAIIQRQTHHLARLVDDLLDVSRITRGKVELRRERMDT 224

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             +L +V   I        + ++    G       D  RL QIF  +L NA  ++  G  
Sbjct: 225 LSVLQQVLSLIRPTAEGRGLSLESHLPGTPLWVEGDSTRLEQIFMNLLDNAAKYTDAGGH 284

Query: 708 VILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           + + A+++        +  +++ G  IP      +F  F          R G+G+GL++V
Sbjct: 285 ITVHASQEGVDGSAQVVVRIRDTGIGIPSHKLPDIFELFAQADESLERSRGGLGIGLTLV 344

Query: 762 ESFINLHGGHVSISSS-DEGVTTINCRIP 789
            + + LHGG +  +S      +    ++P
Sbjct: 345 RNLVELHGGTIGATSDGPGQGSEFVVKLP 373


>gi|257094698|ref|YP_003168339.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047222|gb|ACV36410.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 918

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 4/246 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +   A   L E NE L++ D +K+  +  V++ELR+PLT+I  F++LL+      L  ++
Sbjct: 662 ELTAATLELQEANERLQELDRVKDDIMSSVTHELRTPLTSIRAFSELLRDDPKMHLADRE 721

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++  I + +  L  L+N  LDLA +++G    N   + L +++ +   + +    E +
Sbjct: 722 R-FLGLIVSEAERLSRLINQTLDLAKIESGRADWNGCELDLKEVVEQSLAATSQLFREKD 780

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKN 725
             + +     L   +ADR RL+Q+   +LSNA  F  +G   V +K          SV +
Sbjct: 781 AHVDLDLPDNLPLILADRDRLIQVMLNLLSNAAKFLVQGAGRVSVKLRVLADALEVSVSD 840

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  I  +  + +F +F         +  G GLGL I    +   GG + + S      T
Sbjct: 841 NGPGIRPEDQELIFEKFRQVGDTMTAKPAGTGLGLPISRRIVEHFGGRLWVESVPGEGAT 900

Query: 784 INCRIP 789
               +P
Sbjct: 901 FRFTLP 906


>gi|188577308|ref|YP_001914237.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188521760|gb|ACD59705.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 921

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 12/247 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+  Q  Y 
Sbjct: 533 AWQLAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYT 589

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +   LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R  
Sbjct: 590 ESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFS 649

Query: 671 VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
           +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 650 LEI-GLLGDITASGDSTRIRQILLNLLNNAIKFTERG-VVGLKLTTLGSYQGLRFEVADT 707

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I  +    +F RF             G GLGL+I +      GGH+ + S     T 
Sbjct: 708 GPGINAEQKARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVISRLGEGTR 767

Query: 784 INCRIPS 790
               +P 
Sbjct: 768 FVVDLPL 774


>gi|6573134|gb|AAF17563.1| sensor protein EvgS1 [Escherichia coli]
          Length = 1197

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISS 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|261344881|ref|ZP_05972525.1| sensor histidine kinase/response regulator [Providencia rustigianii
           DSM 4541]
 gi|282567019|gb|EFB72554.1| sensor histidine kinase/response regulator [Providencia rustigianii
           DSM 4541]
          Length = 781

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 166/435 (38%), Gaps = 20/435 (4%)

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRGGTIWMFENLTV 421
           +L E     T   +   V +  +   +T    N + L   +I         + + E L  
Sbjct: 79  QLEESRQRLTRMVDKLEVMRHRDAELNTQLQGNIEQLNLEIIEREKAESAHLELLEQLKQ 138

Query: 422 QVDLETKYNTLVKVQ----GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++    +     + Q       +D   + V     +      N A   L    E +L   
Sbjct: 139 EMKFREQTQIEFEQQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKQLVGL 198

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T +    A  +    E+D       +  +++       G       +  E   +P  +  
Sbjct: 199 TPLDIYDAEIAAKVMETDEKVFRHNVALTYEQWLVYPDG-----RKACFELRKVPFYDRV 253

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                +        ER      EAL  A   K +F+  +S+ELR+PL  I+G + +L  +
Sbjct: 254 GKRHGLMGFGRDITER--KRYQEALENASRDKTTFISTISHELRTPLNGIVGLSRILLDT 311

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K   L+ +Q+ Y++ I  S+  L N+ ND++++  ++   ++L+   +VL + +N+++  
Sbjct: 312 K---LSKEQASYLKTIHVSAITLGNIFNDVIEMDKIERRKVQLDNQPVVLPEFVNDLENL 368

Query: 658 IATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    ++  +     L  + + D  RL QI   ++ NA+ F+ KG   +      +
Sbjct: 369 SGLLVQPKGLKFVLDVARGLPKTILTDGTRLRQILWNLIGNAVKFTQKGEVKLSIWREAD 428

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVS 773
               F VK++G  IP+D    +F  +             G G+GLS+        GG + 
Sbjct: 429 NKLFFQVKDSGIGIPQDELDKIFAMYYQVRDSAGGRPATGTGIGLSVSRRLAQSMGGDIQ 488

Query: 774 ISSSDEGVTTINCRI 788
           + S     +T    I
Sbjct: 489 VESKIGQGSTFTLSI 503


>gi|169335274|ref|ZP_02862467.1| hypothetical protein ANASTE_01685 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258012|gb|EDS71978.1| hypothetical protein ANASTE_01685 [Anaerofustis stercorihominis DSM
           17244]
          Length = 617

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 106/235 (45%), Gaps = 9/235 (3%)

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
             + A   K  F+ ++S+E+R+PL  I G T + K +       + +Q  E I  S   L
Sbjct: 231 YAQNASNAKGRFLSNISHEMRTPLNAISGMTRIGKENIDDK--KEVTQCFEKIDTSVNYL 288

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
            NL+ND+LD++ +++G  K+      L+ L+  +   I  + +E  I      D K    
Sbjct: 289 TNLINDVLDISRIESGKTKIENRPFNLDTLIKNIITIIQNQTNEKEINFICKYDLKSPYL 348

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIPEDMC 735
           + D   L QI   I+ NA+ ++     V +  + DN         F++ +NG  I     
Sbjct: 349 IGDELHLQQILVNIIGNAIKYTHNKGKVEVIISDDNIDNNKSKVNFTISDNGIGIEAKQL 408

Query: 736 KSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++F  F    +    Q +G GLGL+I  + + + GG + + S  +  ++    +
Sbjct: 409 PTIFKAFERADNAMEQQYKGTGLGLAISYNLVKMMGGELKVRSEVDKGSSFFFDL 463


>gi|217962157|ref|YP_002340727.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|229141405|ref|ZP_04269943.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26]
 gi|217065095|gb|ACJ79345.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|228642186|gb|EEK98479.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26]
          Length = 484

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  I  HGG +   S     T+I   +
Sbjct: 444 LGLAIAKQIIEEHGGEIWAESELGEGTSIFFSL 476


>gi|317133438|ref|YP_004092752.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315471417|gb|ADU28021.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 479

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 4/256 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +        + T+  R   A+      L K ++++   + ++S++LR+PLT +  + +L+
Sbjct: 226 DFDVQFESGSYTEINRLAAAMNYMTGELSKTEQLRRDLIANISHDLRTPLTMVKMYAELI 285

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +    G    K++ + + I   +  L  L+ D+LDL+ + AG   L   T  L +    +
Sbjct: 286 RD-VSGGQTEKRTAHAQLIIDEADRLSLLIKDMLDLSKIQAGTESLKPVTFDLGEKARVI 344

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
               A     N  R  +   G   +  AD +++ Q+   ++ NA++++    TV L+ AR
Sbjct: 345 LTRFAVLAERNGYRFSLDCAGD-TAVTADERKIEQVIYNLVGNAVNYTGADKTVSLRVAR 403

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHV 772
            N    FSV + G  IP + C  ++ R+       + R  G GLGLSIV++ +  H    
Sbjct: 404 QNDGVCFSVTDTGKGIPPEKCAHIWERYYMAKETTRHRVVGTGLGLSIVKAILAAHHARF 463

Query: 773 SISSSDEGVTTINCRI 788
            + S     +T    +
Sbjct: 464 GVESIVGKGSTFWFVL 479


>gi|322701064|gb|EFY92815.1| histidine kinase 1 [Metarhizium acridum CQMa 102]
          Length = 1293

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  
Sbjct: 696 QRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNI 752

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +   
Sbjct: 753 VNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTVFNALKTLAVKANEKFLDLTYK 812

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSV 723
            D  +    + D  RL QI   ++ NA+ F+  G   +    R N            F V
Sbjct: 813 VDSSVPDHVIGDSFRLRQIILNLVGNAIKFTEHGEVSLTIKERANQHEVGVGEYAIEFVV 872

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG + + S     
Sbjct: 873 EDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGDLWVLSEAGKG 932

Query: 782 TTINCR 787
           +  +  
Sbjct: 933 SQFHFT 938


>gi|253568339|ref|ZP_04845750.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251842412|gb|EES70492.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 908

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 130/248 (52%), Gaps = 6/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N T   +  + L E  +    +D +K++F+ ++S+E+R+PL  I+GF++L+         
Sbjct: 525 NNTKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM---VYSEDP 581

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           +++ +Y+  I +++ +LL L+NDILDL+ +++GI++    T  L  +  E+   I  K+ 
Sbjct: 582 AEKEEYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCGELYTMIQPKIT 641

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             ++  ++ + G       DR RL Q++   L+NA+  +  G  + +    + G     V
Sbjct: 642 NPDVEFQMANSGPDCWIFLDRNRLKQVWMNYLTNAIKCTKSGH-IKMGYGIERGGIRIYV 700

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +++G  IP ++ + VF RF       Q  G GLGL+I  + I   GG V  +S+ +  +T
Sbjct: 701 EDSGVGIPIELQERVFGRFQKLNEFAQ--GTGLGLAISRAIIEGAGGEVGFTSTPDVGST 758

Query: 784 INCRIPSK 791
               IP +
Sbjct: 759 FWAWIPCE 766



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 15/161 (9%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN-------PSND 353
             DQL     I   L ++I I+D N  L+  N   ++++ +       N       P  D
Sbjct: 24  TKDQLLFAESIYACLPMSIEIYDTNGILRSINEHALQMYGVTDKTTVVNIVNLFNSPYVD 83

Query: 354 ELL--EFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
           E L     R  + + E + ++   K+N +   ++  T          + + +        
Sbjct: 84  ETLKNRIQRGEDIVLEFEYDFDRIKDNAYFSTQNKNTIIYE-----AKVVPLRSKEGEII 138

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
           G I +  ++T   + E + +   K     ++  S    V+ 
Sbjct: 139 GHILLSNDVTAIKESEFRTDESKKNLEMAMEAASMSSWVYD 179


>gi|229186930|ref|ZP_04314085.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1]
 gi|228596667|gb|EEK54332.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1]
          Length = 484

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 127/273 (46%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I +V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVTVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  I  HGG++   S     T+I   +
Sbjct: 444 LGLAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|77748572|ref|NP_641608.2| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 290

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 42  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 101

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S+  L  +V+D+LDLA ++AG + ++     L DL   ++          +  +    
Sbjct: 102 SGSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDMGSTTLIFED 161

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP +
Sbjct: 162 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAE 221

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 222 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINSVVGQGSEFYVVLP 279


>gi|119491243|ref|XP_001263210.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
 gi|119411370|gb|EAW21313.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
          Length = 1938

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 15/294 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            T      K       L+    +E S      A    T  ++ D    ER L +  + L  
Sbjct: 1172 TEIRLRSKGGDYRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNN 1231

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              E K  F  ++S+E+R+PL  I+G    +  ++   L++ Q + ++ I  SST L  LV
Sbjct: 1232 QMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQ---LDTDQRRMLDTIQNSSTNLRELV 1288

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
            ++ILD++ V+AG M L  S   +  ++ +V  +I+++  +  + +  + D       + D
Sbjct: 1289 DNILDVSRVEAGKMSLVNSWFHVRSVVEDVIDTISSRALDKGLELNYLMDVNVPPMVIGD 1348

Query: 684  RQRLLQIFSKILSNAMDFSSKGST-VILKAARD------NGDFI--FSVKNNGSSIPEDM 734
            R R+ Q+   ++ NA+ F+++G   +     RD        + +  F V + G       
Sbjct: 1349 RFRIRQVLINLVGNAVKFTAQGEVHISCGIYRDASVPLKETELLLNFDVVDTGKGFSARD 1408

Query: 735  CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + +  RF         Q  G GLGL + +  + +HGG ++ SS +    T + 
Sbjct: 1409 AERLMQRFSQLGENASQQNAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGATFSF 1462


>gi|293369483|ref|ZP_06616064.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635435|gb|EFF53946.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 642

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 5/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q
Sbjct: 397 ELLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     ++
Sbjct: 455 QSYYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSD 514

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKN 725
            +    +  +    V D QR+ Q+   +LSNA  F+ +G   +      +    IFSV +
Sbjct: 515 NQFLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTD 574

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP++    VF RF       Q  G GLGLSI +  ++   G + I     G     
Sbjct: 575 TGCGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTGGARFV 632

Query: 786 CRIPS 790
              P 
Sbjct: 633 FSHPL 637


>gi|257484380|ref|ZP_05638421.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 283

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 5/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++D   AE AL    E   +A   K+ F+  +S+ELR+PL +I+GF  LL      S  
Sbjct: 35  DISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPAS-- 92

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q   + +I  +   LL L+N++LD+A ++AG + L+   + L+ +L E    ++    
Sbjct: 93  --QRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAA 150

Query: 664 ENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           + NI +K +         VADRQRL+Q+   +LSNA+ ++     V ++  + +     S
Sbjct: 151 DANIELKALPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVTVS 210

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V + G  I  +    +F  F          G GLGL++ +S + +  G +S+ ++     
Sbjct: 211 VIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGC 270

Query: 783 TINCRIPS 790
                +P 
Sbjct: 271 RFILELPL 278


>gi|160882577|ref|ZP_02063580.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483]
 gi|156112021|gb|EDO13766.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483]
          Length = 674

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 5/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q
Sbjct: 429 ELLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQ 486

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     ++
Sbjct: 487 QSYYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSD 546

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKN 725
            +    +  +    V D QR+ Q+   +LSNA  F+ +G   +      +    IFSV +
Sbjct: 547 NQFLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTD 606

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP++    VF RF       Q  G GLGLSI +  ++   G + I     G     
Sbjct: 607 TGCGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTGGARFV 664

Query: 786 CRIPS 790
              P 
Sbjct: 665 FSHPL 669


>gi|49478723|ref|YP_038716.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|206978115|ref|ZP_03238998.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|229198830|ref|ZP_04325524.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293]
 gi|49330279|gb|AAT60925.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|206743651|gb|EDZ55075.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|228584666|gb|EEK42790.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293]
          Length = 484

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  I  HGG +   S     T+I   +
Sbjct: 444 LGLAIAKQIIEEHGGEIWAESELGEGTSIFFSL 476


>gi|82751086|ref|YP_416827.1| respiratory response protein B [Staphylococcus aureus RF122]
 gi|82656617|emb|CAI81041.1| staphylococcal respiratory response protein B [Staphylococcus
           aureus RF122]
          Length = 583

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 160/397 (40%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEINARFFVVTTSYIDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K   +  D  R+ Q+ + ++ N
Sbjct: 428 LSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNY-CKKRVWRYDMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +  A +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCAENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 583


>gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
 gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
          Length = 1390

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQSQYVEY 612
           A   + E L + D  K +F  ++S+E R+PLT I+G   ++L+TS+   L+ +  + +E 
Sbjct: 337 AQQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSE---LDVRVREELEL 393

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              +   L  LVN +LD + + AG M+  +  + L  +  E+     + +    +   V 
Sbjct: 394 AHRNGLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAGLEFTVD 453

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                     DR    ++   +LSNA+ F+ +G+ V ++   D+G  + +V + G  IPE
Sbjct: 454 CPPLAEPVFVDRDMWEKVVLNLLSNALKFTREGA-VTVRVTADDGVAVVTVADTGVGIPE 512

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F RF            G G+GL++V+  I LHGG +   S +   TT   ++P
Sbjct: 513 AEMPRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGRGTTFTIQMP 571


>gi|294665317|ref|ZP_06730609.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604910|gb|EFF48269.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 290

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 42  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 101

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S+  L  +V+D+LDLA ++AG + ++     L DL   ++          +  +    
Sbjct: 102 SGSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDVGSTTLIFED 161

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP +
Sbjct: 162 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAE 221

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 222 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINSVVGQGSEFYVVLP 279


>gi|226324990|ref|ZP_03800508.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758]
 gi|225206338|gb|EEG88692.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758]
          Length = 592

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 12/269 (4%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIG 589
           L   +     +      R  +AL  + E+ RKA    E+KN+F+ ++S+++R+P+  IIG
Sbjct: 180 LFMVEHQQDQMEFEHRKRLSKALELEKESTRKAKVAGEVKNAFLANMSHDIRTPMNAIIG 239

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           F+D++               +  I AS  ILL ++ND+LDL+ +++G  ++      L  
Sbjct: 240 FSDIIAEHP--DDEEIVKNAISKIQASGEILLKIINDVLDLSKIESGKAEIVEMVTDLKQ 297

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +   +K  +   + +  I  KV    +      D  +L Q+   +L+NA+ F+  G T+ 
Sbjct: 298 MEENLKMMLEYSIQKGMIDFKVEDQIENPLVWCDATKLQQVLVNVLNNAVKFTQAGGTIT 357

Query: 710 LKAARD-----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVE 762
               +        ++ F++K+ G  + E+  K  F  F         +  G GLGL+IV+
Sbjct: 358 FSCVQRMIAPGFAEYKFTIKDTGIGMTEEFQKHAFEAFERERTSTESKTEGTGLGLAIVK 417

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             ++L  G V I S+    T I   +P +
Sbjct: 418 KLVDLMHGDVIIQSNSGQGTKIQISLPLR 446


>gi|330969015|gb|EGH69081.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 1188

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 155/370 (41%), Gaps = 9/370 (2%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATC 487
            N  +  +   +D +   + V    GR+   N ++   L  + E          N+    
Sbjct: 555 LNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 614

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
                 +D  +L       F D    L G         + +          +  ++++T+
Sbjct: 615 LAEQMHTDYLNLLENHQPVFSDRTIELPGKRMDAWQWTVPFFAADGQLQGLLGGWIDITE 674

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+ L E      +A+E K++F+  +S+E+R+P+  IIG  + L+  +   L    S
Sbjct: 675 RKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLE-LECEQALRLGMMPS 733

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           Q ++    S+T L+ L+ + LDLA ++AG M+L+ +   L  L + V +  + +  E  +
Sbjct: 734 QGLQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLRGLFDGVIELFSAQAREKGV 793

Query: 668 RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFS 722
            +++    +  G +  D  RL Q+   +L NA+ F+ +G+ V+       + D+      
Sbjct: 794 ELRLELSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVRLDVTSDSPDSTRVRIG 853

Query: 723 VKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           ++++G  I     + VF  F            G GLGLSI    + L  G +S+ S    
Sbjct: 854 IQDSGEGIDPQRQQQVFQPFTQANDDTAAHYGGSGLGLSITRQLVALMKGDISLHSEPGK 913

Query: 781 VTTINCRIPS 790
            T +   +P 
Sbjct: 914 GTLVTIDLPL 923



 Score = 44.9 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 10/145 (6%)

Query: 188 LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEE 247
           L++ ++    L D +   ++ RD  G ++  N SY+++                 L    
Sbjct: 555 LNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 614

Query: 248 IKKRMISS-----SALEKNFCETVSTLEHGNNKSYKIVRVLNSF-----GEAGIAIDVSK 297
           + ++M +         +  F +    L      +++      +      G  G  ID+++
Sbjct: 615 LAEQMHTDYLNLLENHQPVFSDRTIELPGKRMDAWQWTVPFFAADGQLQGLLGGWIDITE 674

Query: 298 EITVNDQLTHTYEILHNLTVAIAIF 322
              +  QL     +      A + F
Sbjct: 675 RKQLEQQLQEATRLAAQANEAKSAF 699



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 7/142 (4%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFL 359
           +NDQL   + +L  +   I + D    L   NRS+ +   I    +     ++  L+   
Sbjct: 555 LNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRA 614

Query: 360 RSANKLPEQLNWKTWKENIFS--VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
            +     + LN     + +FS    +      D W      T+          G +  + 
Sbjct: 615 LAEQMHTDYLNLLENHQPVFSDRTIELPGKRMDAWQW----TVPFFAADGQLQGLLGGWI 670

Query: 418 NLTVQVDLETKYNTLVKVQGET 439
           ++T +  LE +     ++  + 
Sbjct: 671 DITERKQLEQQLQEATRLAAQA 692


>gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
 gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
          Length = 1389

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 4/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+ +A   + E L + D  K +F  ++S+ELR+PLT I+G  + L+T   G+     ++ 
Sbjct: 335 RSYQAQQRRAEELAELDRAKTTFFSNISHELRTPLTLIMGPVEELRTRLSGAGEEVHAE- 393

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L  LVN +LD + ++AG M+  Y  + L  +  E+     + +    + +
Sbjct: 394 LDVIHRNGLRLGKLVNTLLDFSRLEAGRMQARYEPVELAAVTAELASVFRSAVERAGLTL 453

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V           DR    ++   +LSNA+ F+ +G+ V ++  R   D +  V + G+ 
Sbjct: 454 DVDCPALDEPVYVDRAMWEKVVLNLLSNALKFTFEGA-VRVRVRRSGPDAVVVVADTGTG 512

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +PE     +F RF    NA      G G+GL++V   + LHGG +   S++   TT   R
Sbjct: 513 VPEAEMPRLFERFHRIENARARSHEGSGIGLALVRELVGLHGGTIDAESTEGVGTTFTLR 572

Query: 788 IP 789
           IP
Sbjct: 573 IP 574



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 7/157 (4%)

Query: 297 KEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +   + D        L  +L  A  + D++  +   N +F ++       L   P +   
Sbjct: 758 ELARLRDHHLRWRTALIDSLQEAFFVCDESGTVVEINAAFTDILGYGPEGLPYAPVHPWW 817

Query: 356 LEFLRSANKLPEQLN-WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-PRGGTI 413
                      +  + +    E+    Y    TH+D   L      +     N  RG T+
Sbjct: 818 PHAPADPGAYEQVGDAFARLLESPRGSYTVPVTHRDGHRLWVAVNFNKAEDPNTGRGVTV 877

Query: 414 WMFENLTVQ---VDLETKYNTLVKVQGETIDHLSEGV 447
             F ++T +   V  ET    L        D L E +
Sbjct: 878 GTFRDVTAEHYAVQRETALAALSTSLSRAAD-LPEAL 913


>gi|300023279|ref|YP_003755890.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525100|gb|ADJ23569.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 614

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 9/247 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E       E   +A   K+ F   +S+E+R+PL +IIG+T L+   +   L+ + +  + 
Sbjct: 214 EAEAKMAREEAERATSAKSEFFATMSHEIRTPLNSIIGYTSLVLARQ--GLSREDTNDLS 271

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  +   LL +VNDILD + ++AG +K   S++ L  L+         +  E  + I+ 
Sbjct: 272 IVRDAGKALLAIVNDILDFSAIEAGRLKFIKSSVTLPPLIEGCVALFFAEGREKGLVIRS 331

Query: 672 ISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKN 725
             D  L   +F AD  RL Q+   +++NA+ F+S+GS V    IL    ++ +  F V++
Sbjct: 332 EIDPDLHDLTFTADAHRLRQVLLNLVNNAVKFTSEGSVVVGAKILDREENSANVRFFVRD 391

Query: 726 NGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I  D+  ++F RF    + R +R G GLGL+I  S +  +GG + I S +   +T 
Sbjct: 392 TGPGIRADLIPNLFQRFSQLDNGRDRRGGSGLGLAICRSIVQANGGKIDIESHEGEGSTF 451

Query: 785 NCRIPSK 791
              +P +
Sbjct: 452 WFEVPLE 458


>gi|237803508|ref|ZP_04591093.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025490|gb|EGI05546.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 462

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 119/253 (47%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+++     +Q
Sbjct: 62  EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTRM---TDEQ 118

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L DL+N    +      +  
Sbjct: 119 SEYATLATESTEHLLRVINDILDFSRIERDALQMEGIAFNLVDLINASTHAFNHSALQRK 178

Query: 667 IRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           + +++     L   + + D  R+ QI   ++ NA+ F+ +G  V ++A     D     F
Sbjct: 179 LSLELKIKPGLEALAVIGDPTRIRQILVNLIGNALKFTEQG-KVCVEADWAMLDEDHLRF 237

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V ++G  I  +  +S+F+ F         +  G GLGL I  +     GG +   S 
Sbjct: 238 TCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGAGLGLPIARTLAERMGGTLHAQSE 297

Query: 778 DEGVTTINCRIPS 790
           +   +    +IP 
Sbjct: 298 EGSGSVFTLQIPL 310


>gi|113954151|ref|YP_731417.1| sensory box histidine kinase [Synechococcus sp. CC9311]
 gi|113881502|gb|ABI46460.1| sensory box histidine kinase [Synechococcus sp. CC9311]
          Length = 693

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 149/391 (38%), Gaps = 41/391 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L+NP  R L++ E   L     + +I   
Sbjct: 295 EELQAAQVKQASLIATMADGAVLLDEKGQIVLANPTARRLFRWEGRNLEGQDFLNSIPDL 354

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +   +E         ++    D  +      E           +  P+ + +       
Sbjct: 355 LANELHEP-----LDGVLNQGRDSNELRSSIGEPPRTLRFVLQAVREPSGENLKGIAVTM 409

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L        ++ +
Sbjct: 410 QDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLYEMGDQLSDTDK 459

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++   +A +  L  LVND+LDL+ +++    + ++ + L   L +  +S      +  
Sbjct: 460 QEFLGIANAETDRLTRLVNDVLDLSRLES-HPSVQFTELDLRPGLEQTLRSYQLNASDKQ 518

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------- 717
           + + + +   L   + +   +LQ+   ++ NA+ FS  GS ++++A              
Sbjct: 519 VELDLEASIDLPDILGNWDLILQVLDNLVGNALKFSRSGSRIVIRAYAWPDSCWMGPLPE 578

Query: 718 ---------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIV 761
                               V + G  I ED  + +F RF    +      G GLGLSIV
Sbjct: 579 DSLQAPQCEMVSPLPKLRVEVSDTGYGISEDKQQRIFERFYRVENAVHTEVGTGLGLSIV 638

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              +  H   + ++S  +  TT    +P  +
Sbjct: 639 RGILEKHSSVIRMASEPDVGTTFWFDLPLAQ 669



 Score = 44.5 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 81/274 (29%), Gaps = 35/274 (12%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            S    +F   +     G     +++   N+        D +    +         ++  
Sbjct: 253 RSIAAGDFQARIGLPIGGE--LGELLDGFNAMALQLQDYDAANIEELQAAQVKQASLIAT 310

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP------EQ 368
           +     + D+   +   N +   L+  +   L      + + + L +    P      + 
Sbjct: 311 MADGAVLLDEKGQIVLANPTARRLFRWEGRNLEGQDFLNSIPDLLANELHEPLDGVLNQG 370

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            +    + +I    ++          P+G+ L          G     ++LT +V+L   
Sbjct: 371 RDSNELRSSIGEPPRTLRFVLQAVREPSGENLK---------GIAVTMQDLTREVELNAA 421

Query: 429 YNTL--------------VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
            +                +K   ET+  + + ++       + ++N     L +   + L
Sbjct: 422 QSRFISNVSHELRTPLFNIKSYVETLYEMGDQLSDTDKQEFLGIANAETDRLTRLVNDVL 481

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                +  + +  S  + E D        + S+ 
Sbjct: 482 ----DLSRLESHPSVQFTELDLRPGLEQTLRSYQ 511


>gi|186683169|ref|YP_001866365.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465621|gb|ACC81422.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1118

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 130/277 (46%), Gaps = 16/277 (5%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S + L N   ++   +VT+  +  + L  KN  L + + +K+ F+  +S+EL++PLT ++
Sbjct: 349 SEVLLSNDLWLVLATDVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVL 408

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G + LL   +LG LN +Q++Y   I  S   L+++VNDILDL  ++ G M L  + + ++
Sbjct: 409 GLSRLLVDQQLGELNERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMDLTLTPVKIS 468

Query: 649 DLLNEVKQSIATKMHENNI--------------RIKVISDGKLGSFVADRQRLLQIFSKI 694
            + +           +                 +  +  +  L   VAD  RL Q+   +
Sbjct: 469 AVCDRALSEAKAIHTQTTKTTSQTQENDRSSAPQFCLSIELGLDEMVADELRLRQMLVHL 528

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRR 752
           LSNA  F+     + L+ +R  G   F++ + G  IPE     +F +F    +    Q  
Sbjct: 529 LSNAFKFTEISGEIGLRVSRWEGWIAFTIWDTGIGIPEHQQHLIFQKFQQLENPLTRQFE 588

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL +  +   LHGG VS  S +   +     +P
Sbjct: 589 GTGLGLVLTRALARLHGGDVSFLSREGKGSQFTLLLP 625


>gi|158339431|ref|YP_001520608.1| two-component hybrid sensory histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309672|gb|ABW31289.1| two-component hybrid sensory histidine kinase, putative
           [Acaryochloris marina MBIC11017]
          Length = 691

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 150/332 (45%), Gaps = 29/332 (8%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQ 537
           IR+      R   +     L   +IT+    R   +L  T + L      YS   + N Q
Sbjct: 135 IRDYDINDYRLKIDLTRQRLLTTVITTLRSYRDLVTLDATNKELDTL---YSQQIVANQQ 191

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                    + +   +ALT   +   KA++ K+ F+ ++S+ELR+PL  ++G+T LL   
Sbjct: 192 ---IERQQQELIAQNQALTIAKQQAVKANQAKSVFLGNMSHELRTPLNAVLGYTQLLARE 248

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                 +K+   +E I+     LL L+ND+LDL+ +D+G + LN  T   ++LL  +K  
Sbjct: 249 PQLQSFTKE---LETINRCGKHLLALINDVLDLSRIDSGQVVLNIDTFNFHELLKTLKDI 305

Query: 658 IATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-----ILK 711
             TK     +  ++     L  +V  D  +L Q+   +LSNA+ F+ +G           
Sbjct: 306 WTTKAQHKGLDYQLEWGSDLPHYVRTDEGKLRQVLMNLLSNAIKFTEQGHITFRIHQTTV 365

Query: 712 AARDNGDFI----------FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            ++ N +            F V+++G  I     +++F+ F+           G GLGL+
Sbjct: 366 VSKLNEELHLPLTPHYWLNFEVRDSGPGISVSELENIFHPFIQGEQARSVVDEGTGLGLA 425

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           I   F++L GG++S+SSS    +     +P +
Sbjct: 426 ISHQFVSLMGGNLSVSSSLGAGSCFKFSVPVE 457


>gi|323977442|gb|EGB72528.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 1197

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 178/432 (41%), Gaps = 33/432 (7%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N         ++S 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLEN---------SDSP 627

Query: 496 GWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYSII---------PLPNAQTMLTFVN 544
             D+F+ +  +T+   E +++   +  +++ + +  I             NA  +  + +
Sbjct: 628 FKDVFSNVHEVTAETKENRTIYSQVFEINNGIEKRCINHWHTLCNLPASDNAVYICGWQD 687

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +T++     AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     
Sbjct: 688 ITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--E 745

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ + +    A+   LL L+ +ILD+  +++G  +L    + +  L+     S       
Sbjct: 746 QRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPALVQNTCHSFGAIAAS 805

Query: 665 NNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF 721
            +I +   S   +      D Q   Q+ S +LSNA+ F+++G+  +       D+   + 
Sbjct: 806 KSIALNCSSTLPERYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVI 865

Query: 722 --SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             ++ + GS + ++  + +F R+       Q+ G GLGL I +  I    G +S+ S   
Sbjct: 866 KMTIMDTGSGLSQEEQQQLFKRYSQTTAGRQQTGSGLGLMICKELIKNMQGDLSLESHPG 925

Query: 780 GVTTINCRIPSK 791
             TT    IP +
Sbjct: 926 IGTTFTITIPVE 937


>gi|163788810|ref|ZP_02183255.1| hypothetical protein FBALC1_11252 [Flavobacteriales bacterium
           ALC-1]
 gi|159876047|gb|EDP70106.1| hypothetical protein FBALC1_11252 [Flavobacteriales bacterium
           ALC-1]
          Length = 942

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 122/265 (46%), Gaps = 3/265 (1%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTE-KNEALRKADEIKNSFVQHVSYELRSPLT 585
           +  I     A      +   +  + +  L+  + E ++  D+IK  F  ++S+E R+PL 
Sbjct: 389 QIVIFSFGIAYRRQVIMKKHNEEKLKAQLSIVEMERIKDLDKIKTRFFANISHEFRTPLA 448

Query: 586 NIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            I G  +   K S    + +  +++   I  ++  L NLV+ +LDL+ +++G + L+   
Sbjct: 449 LISGPINRAFKQSAKDEVITISNKHFNIIQNNANRLQNLVDQLLDLSKIESGKVHLSLKQ 508

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L   L  +  S  +     NI +      +L S   D+ +L +I + ILSNA  ++S+
Sbjct: 509 GGLIKFLRSIIYSFESMAERENISLNTSFPEELDSAFYDKDKLEKIVTNILSNAFKYTSE 568

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
             +V      +       + + G  I ++  K +F RF       + +G G+GL++ +  
Sbjct: 569 NGSVTTTIDYNKNYLNLEITDTGKGIDKEEVKRIFERFYRVEGS-EEKGSGIGLALTKEL 627

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           I LH G +S+ S+    TT   R+P
Sbjct: 628 IELHNGKISVDSTKHKGTTFKVRLP 652


>gi|37781575|gb|AAP35032.1| SrrB [Staphylococcus aureus]
          Length = 583

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYVDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 428 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 583


>gi|21233498|ref|NP_639415.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|21115349|gb|AAM43297.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
          Length = 1147

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 186/471 (39%), Gaps = 32/471 (6%)

Query: 336  VELWEIDLAFLATNPSNDELLEFLR--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             +L  +    +    ++   L+  +       P  +  + W +    +  +S        
Sbjct: 546  ADLQALAERVVGERHAHRAFLDQAQLLERELQPTAVADRAWVQFTERLLAASIGAA---- 601

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                 +  +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD
Sbjct: 602  -----SARLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPD 656

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R+   N  ++ L+   +  L  G  + ++    +      +G D+   I       R  
Sbjct: 657  MRLTAWNRRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAG 715

Query: 514  LQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
                 E       V+E     LP    + ++ ++TD  RAERAL + NE L +       
Sbjct: 716  SPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSR 775

Query: 566  -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                  + K  F+  +S+++  PL     F   L+ S     N +Q    E + AS    
Sbjct: 776  EAELAQQSKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAA 833

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              L++ +LD++ +DAG ++        + L++E+    A       +R++V +  +    
Sbjct: 834  EELLDGLLDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVAGSRGLRLQVHA--RALWV 891

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +DR+ L ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F 
Sbjct: 892  RSDRRLLRRVMQNFLANALRYTRQG-RIVLGMRGRGAQVELQVWDTGPGIPEHHMRQIFE 950

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F           +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 951  EFRRYQQPFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGQGSMFSILLP 1001



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +  +L + E++   ++  A  +     ++      +    +  +L   G     
Sbjct: 561 AHRAFLDQAQLLERELQPTAVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 620

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 621 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 680

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 681 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 739

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 740 GGYVTSYNDITDYKRAERALLDANENLEQ 768


>gi|86143811|ref|ZP_01062187.1| two-component system sensor histidine kinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829854|gb|EAQ48316.1| two-component system sensor histidine kinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 804

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 150/316 (47%), Gaps = 17/316 (5%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           IRN+ +T  R     +G           +   + +  TL+++   +L  S   L     +
Sbjct: 235 IRNLLSTLER-----EGTFTARQREALLNSRIQEISKTLKII--GILSVS---LAIGFVI 284

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           + F + + S +  R L E N   +   + +   +  +++++RSPL  ++GFTDLLK +  
Sbjct: 285 MIFKDASRSQQYSRELEESNATAQSLLKSREQLMATITHDMRSPLNTVLGFTDLLKKT-- 342

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            ++++KQ +Y++ +  S   +L LVND+LD A ++AG + +         L+ +V     
Sbjct: 343 -AVDAKQMRYLDTVQKSGDYILKLVNDLLDFAKLEAGKISVEKVPFNPKKLIEDVIVVSL 401

Query: 660 TKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            +  +  + +      +L +  ++D  R+ QI + +++NA  F+ +GS + +   +D  +
Sbjct: 402 PQPLKTGVEVHTEIPDELDTIFLSDPFRIKQILANLITNAYKFTEEGS-ITVALHKDGKN 460

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
             F + + G  IP++  + +F  F       QR   G GLGLSI +    L  G + + S
Sbjct: 461 LRFKIIDTGCGIPKEKQQLIFKEFSQAEETTQRKYGGFGLGLSISQKLTELLEGKLQLKS 520

Query: 777 SDEGVTTINCRIPSKE 792
                +T    +P ++
Sbjct: 521 IPGKGSTFTLIVPVEQ 536


>gi|323138654|ref|ZP_08073721.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322396142|gb|EFX98676.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 780

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/507 (17%), Positives = 192/507 (37%), Gaps = 37/507 (7%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ---FHNRSFVELWEIDLAFLATNPSNDE 354
           E  +          L      + IF+Q+R L+    HN +   L       +    ++ +
Sbjct: 155 EERLRVANERFTAALEASP--VVIFEQDRELRCMWVHNSA---LGYASEEIIGK--TDHD 207

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ------TLHVIVTSNP 408
           LLE    A+ L         K  +    + +   ++ +   +G+       +    + + 
Sbjct: 208 LLERKEDADCL------AAIKRRVLDTGQPAR--EEVFVTSDGKPRYFDLHVQPRRSGHE 259

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLW 467
             G +    ++T +     +           +D        +      ++        L 
Sbjct: 260 VIGLLCTAVDITERKQSLDRLRKNDLRLRIAVDAAYVISFEWDIQRNEVRRYISTDPGLP 319

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL--QGTLELLSDSV 525
            T E + S    ++       R    ++      +    ++ E + +   G +  L +  
Sbjct: 320 PTPEMQPSTFEAVQQAVHPDDRALFSANVHAALESREGLYESEFRIVRPDGAVAWLFERG 379

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                     A  +    +VT+  R E AL        +AD+ K+ F+  +++ELR+PL 
Sbjct: 380 RVERDAEGRPAFLIGLSQDVTERRRIEEALR-------EADQRKDEFLATLAHELRNPLA 432

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            +     +L+         ++ +        +  L+ LV+D+L+++ +  G + L    +
Sbjct: 433 PLRNAIRVLRRDAGRLSEEQRGELFAMFDRQTEHLVRLVDDLLEVSRITRGKIDLRKERV 492

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  +L    ++    +      +++ +  +     AD  RL Q+FS +L+NA  ++  G
Sbjct: 493 DLATILRNAIETSRPAIERGGHELRIDAGAERLILDADPVRLAQVFSNLLNNAAKYTEHG 552

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVES 763
            ++ L   R   + + SV+++G  IP +M   VF+ F          + G+G+GL++V +
Sbjct: 553 GSIALTVERRGDEAVVSVRDSGVGIPPEMAPRVFDIFTQVDRTLGRSQGGLGIGLALVRN 612

Query: 764 FINLHGGHVSISSSD-EGVTTINCRIP 789
            + +HGG V   S      TT   R+P
Sbjct: 613 LLEMHGGSVEAHSEGLGRGTTFVVRLP 639


>gi|303242815|ref|ZP_07329281.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302589626|gb|EFL59408.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 718

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/391 (17%), Positives = 153/391 (39%), Gaps = 26/391 (6%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +   +  E       +     ++ L E V +   +  +   N     L   E  +     
Sbjct: 303 VEESIRAEELLRKSEERYRSLLELLPEAVFLHDRE-NVLFVNQLGVRLLGLENKQQGLEI 361

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA-- 536
            + ++       + E +       +     + R+       L S+   +   +  P+   
Sbjct: 362 SLFDL-------FGEENYHSFLLEMDEIVKNGRQVAFEQTVLNSNKCFKVEFVTTPHIAD 414

Query: 537 ------QTMLTFVNVTDSVRAERALTEKNEALRKADE---IKNSFVQHVSYELRSPLTNI 587
                   +     +      E+++ E    L++  E   +K  +  ++S+E R+PL+ +
Sbjct: 415 DKHVFISVIRDLAQMKKIKEMEKSVVENKRLLKEITEKHKMKTDYFTNLSHEFRTPLSIM 474

Query: 588 IGFTDLLK-----TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           +    +++        L     K +QY+  +  +S  L  + N+ L++A +D+G  +L  
Sbjct: 475 LCTLKIMESFCKLEENLNDQKEKMAQYIASVKTNSYRLFKIANNFLEIAKIDSGYGELKL 534

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
               +  ++ +V  S+        I +   +D +      D  ++  I   +LSNA+ F+
Sbjct: 535 KNYNIVSIVEKVTMSVWEYTRNRRISLMFDTDTEEIILACDIDKIEMIVLNLLSNAIKFT 594

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSI 760
            +G  + +         + SV + G  IPED    +F RF    +       G+G+GLS+
Sbjct: 595 REGGQIEVNIFNHKQHVLISVSDTGIGIPEDKLDLIFERFKQVDNSLAKDYEGIGVGLSL 654

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           V++ + +HGG++ + SS    +T    +P +
Sbjct: 655 VKALVEMHGGNIEVESSLGVGSTFKVLLPKR 685


>gi|81300166|ref|YP_400374.1| multi-sensor signal transduction histidine kinase [Synechococcus
            elongatus PCC 7942]
 gi|81169047|gb|ABB57387.1| multi-sensor signal transduction histidine kinase [Synechococcus
            elongatus PCC 7942]
          Length = 1807

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 109/703 (15%), Positives = 238/703 (33%), Gaps = 58/703 (8%)

Query: 117  NWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC----AIKIEGRVSGSCAFLRILSLD 172
             WL         ++ ++L       DL A  Q        +K++GR+    A      L 
Sbjct: 1132 EWLAIDKSELSQQSLDQLL----PLDLTAWNQGGVGNQGELKLKGRILQYEA----RPLV 1183

Query: 173  GIYSEL--------AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            G  +E              +  +       F  L   +  +V   D  G  +  N ++  
Sbjct: 1184 GPVAERGWVLVLHDVTAQRQVDQAMRERDQFFSLSLEMFCMV---DLRGRFIQVNPAFAA 1240

Query: 225  NTETEGIVF-QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL--EHGNNKSYKIVR 281
                       +   E   L         I          + V  +  + G     +I  
Sbjct: 1241 TLRYSTAELVGRPYLELVDLGDRSQIATTIRRLKAGLLIHDLVIRVWDKAGELHWLQISA 1300

Query: 282  VLNSFGEA-GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-----NRYLQFHNRSF 335
             L        +A DV+++  + +Q+     +L  +    A                +   
Sbjct: 1301 ALGDDRVIYCVARDVTEQRAIQEQILQ-QNLLLRMAGQTAKLGGWSVELPSREVIWSPET 1359

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
              L           P  +E L     A +       +   +   S       H  +  L 
Sbjct: 1360 FSLLGFTDE---DEPDLEEALSLYPPAERALVTKALEDCIQQGISFDFDVAVHNTSGFLL 1416

Query: 396  NGQTLHVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
            + +        +  G  + +   F++++ +   + +   L      T++ +++G      
Sbjct: 1417 DARVT-GQAVRDETGAIVRISGAFQDVSDRKRAQREAQRLADRLRTTLESITDGFYTLDE 1475

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            + R    N         ++  ++    +  +  T      ES+   ++   I + +    
Sbjct: 1476 NWRFSYLNQ-----EGAQQLGVNVEETLGQMVWTAFPGSYESELGHIYRQAIATGE---A 1527

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +   T         E    P  +   +  F +V++  + E+ L      L ++++    F
Sbjct: 1528 AHFETYYEPFGRWFEVHAYPSEDGLAVY-FRDVSERRQTEQNLRITLRELERSNQELQEF 1586

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
                S++L+ PL  I  F+D L  ++  +L+ +   Y+  +++++  +  L+ D+L+ + 
Sbjct: 1587 AFVASHDLQEPLRKIQAFSDRLI-ARTSNLDDESQDYLRRMASAAGRMQTLIIDLLNYSR 1645

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            V+   + L    + L+ +L++V   +   + + +    ++    L +   D  +  Q+F 
Sbjct: 1646 VNTRGLPL--QPLSLDQVLDDVLVDMEASLDQAS---AIVERQPLPTIQGDAGQFRQVFQ 1700

Query: 693  KILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             +LSNA+ F S  +  +++      + G     + +NG    E     +FN F     R 
Sbjct: 1701 NLLSNALKFQSADNQPLIQIYSELTEAGQLRLCIADNGIGFDEKYLDRIFNPFQRLHSRD 1760

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               G G+GL+IV+  I  HG  ++  S     +      P  E
Sbjct: 1761 AYAGTGIGLAIVKKIIERHGATITAKSIPGQGSVFFITFPVTE 1803



 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 74/243 (30%), Gaps = 37/243 (15%)

Query: 296  SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            + E  + +QL+    I   +   +   D+   L F N +  E   ID + L+   S D+L
Sbjct: 1091 TAEQQLKEQLSFNSTITDCMAEGLLAVDERGKLAFANPTAQEWLAIDKSELSQQ-SLDQL 1149

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRGG 411
            L            L+   W +                    G+ L              G
Sbjct: 1150 L-----------PLDLTAWNQ--------GGVGNQGELKLKGRILQYEARPLVGPVAERG 1190

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             + +  ++T Q  ++       +    ++    E   +    GR    NPAF +  +   
Sbjct: 1191 WVLVLHDVTAQRQVDQAMRERDQFFSLSL----EMFCMVDLRGRFIQVNPAFAATLRYST 1246

Query: 472  NRLSPGTHIR--------NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
              L    ++          IA T  R        DL   +      E   LQ +  L  D
Sbjct: 1247 AELVGRPYLELVDLGDRSQIATTIRRLKAGLLIHDLVIRVW-DKAGELHWLQISAALGDD 1305

Query: 524  SVL 526
             V+
Sbjct: 1306 RVI 1308



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 79/244 (32%), Gaps = 23/244 (9%)

Query: 80   NCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ 139
                ++W      PE    L    +      + LS            ++KA E   ++G 
Sbjct: 1349 PSREVIWS-----PETFSLLGFTDEDEPDLEEALSLY---PPAERALVTKALEDCIQQGI 1400

Query: 140  SFDLVAETQNDCAIKIEGRVSGSC------AFLRILSLDGIYSELAETTLKCKKLSNHIS 193
            SFD      N     ++ RV+G        A +RI    G + ++++     ++      
Sbjct: 1401 SFDFDVAVHNTSGFLLDARVTGQAVRDETGAIVRI---SGAFQDVSDRKRAQREAQRLAD 1457

Query: 194  VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL-FKEEIKKRM 252
              +   +S+    +  D+     + N    +  +  G+  ++ +G+     F    +  +
Sbjct: 1458 RLRTTLESITDGFYTLDENWRFSYLNQ---EGAQQLGVNVEETLGQMVWTAFPGSYESEL 1514

Query: 253  --ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
              I   A+         T      + +++    +  G A    DVS+       L  T  
Sbjct: 1515 GHIYRQAIATGEAAHFETYYEPFGRWFEVHAYPSEDGLAVYFRDVSERRQTEQNLRITLR 1574

Query: 311  ILHN 314
             L  
Sbjct: 1575 ELER 1578



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 83/268 (30%), Gaps = 21/268 (7%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
            L E     ++L   +S    + D +   +   D+ G + +AN + ++    +     +  
Sbjct: 1086 LNEVLTAEQQLKEQLSFNSTITDCMAEGLLAVDERGKLAFANPTAQEWLAIDKSELSQQS 1145

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
             +           +    +  E      +   E        +V  +   G   +  DV+ 
Sbjct: 1146 LDQLLPLDLTAWNQGGVGNQGELKLKGRILQYEAR-----PLVGPVAERGWVLVLHDVTA 1200

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--EL 355
            +  V+  +    +          + D        N +F        A L   P  +  +L
Sbjct: 1201 QRQVDQAMRERDQFFSLSLEMFCMVDLRGRFIQVNPAFAATLRYSTAELVGRPYLELVDL 1260

Query: 356  LEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
             +  + A  +          + +  V+ K+ E H           L +            
Sbjct: 1261 GDRSQIATTIRRLKAGLLIHDLVIRVWDKAGELH----------WLQISAALGDDRVIYC 1310

Query: 415  MFENLTVQVDLETKY---NTLVKVQGET 439
            +  ++T Q  ++ +    N L+++ G+T
Sbjct: 1311 VARDVTEQRAIQEQILQQNLLLRMAGQT 1338



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 28/215 (13%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
              +  E +    +       D ++EG+      G++  +NP  +                
Sbjct: 1088 EVLTAEQQLKEQLSFNSTITDCMAEGLLAVDERGKLAFANPTAQEW-------------- 1133

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                A      ++     L    +T+++      QG L+L    +L+Y   PL       
Sbjct: 1134 ---LAIDKSELSQQSLDQLLPLDLTAWNQGGVGNQGELKL-KGRILQYEARPLVGPVAER 1189

Query: 541  TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS-PLTNIIGFTDLLKTSKL 599
             +V V   V A+R + +      +   +       V  +LR   +     F   L+ S  
Sbjct: 1190 GWVLVLHDVTAQRQVDQAMRERDQFFSLSLEMFCMV--DLRGRFIQVNPAFAATLRYSTA 1247

Query: 600  GSLNSKQSQYVEYISAS-----STILLN--LVNDI 627
              +     + V+    S        L    L++D+
Sbjct: 1248 ELVGRPYLELVDLGDRSQIATTIRRLKAGLLIHDL 1282


>gi|83955097|ref|ZP_00963753.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840426|gb|EAP79599.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 1088

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 106/519 (20%), Positives = 194/519 (37%), Gaps = 57/519 (10%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVA---IAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           A        V      + +   N   A     + +QN  +   N  FV+        L +
Sbjct: 366 ARQAHARKDVLKSEVRSKQFYRNAVEAHTVFCMLNQNGAITHVNDQFVQASGRSREALIS 425

Query: 349 NPSNDELLEFLRS---ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
            P  D +    R     + LP  ++   WK  I              H  +G+ + +  +
Sbjct: 426 TPLVDVMDAGNRGVLTGDVLPAMMSGTPWKGTI------------VLHKTDGKAVWLQCS 473

Query: 406 SNP-------RGGTIWMFENLTVQVD--LETKYNTLVKVQGETIDHLSEGVAVFGPDGR- 455
             P             +  ++T   +   E ++N        T++ L + V VF P    
Sbjct: 474 FIPITDGEKQLREIAIVASDMTKTREGVSEARFNN-------TLELLQDHVVVFQPQTYA 526

Query: 456 IKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +  +N +  R L + +E+    G  + ++               L          E ++ 
Sbjct: 527 VMYANASVARHLMRHDESDDWRGKSLSDLIGKRDYDSLRERCAGLIKGPERRVTWEVEAK 586

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G    +S   LEY        + +  + +V+    AE+A              K  F+ 
Sbjct: 587 SGITYDIS---LEYVCPAQDEPRFIAIYRDVSQRKVAEKA--------------KTEFLS 629

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            VS+ELR+PLT+I G   L+ +   G L  K    +   ++S   L+ L+N ILD+  ++
Sbjct: 630 TVSHELRTPLTSIKGALGLVLSGATGQLPDKMKGLITIAASSCDRLILLINSILDMEKIE 689

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFS 692
            G +     T+ L++ LN              + ++ +   D  +     D +RL+Q+  
Sbjct: 690 TGTLDFRMKTLNLSETLNTALVPNQLYAERAGVSLRRVDTPDDDVMLTYGDSKRLVQVLD 749

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
            +LSNA+ FS  G  +++           S+++ G+ I      SVF +F          
Sbjct: 750 NLLSNAVKFSEHGGEILIALHAVGDQLRISIRDFGTGIQAAAQASVFEKFTQGDSSDSRS 809

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + G GLGL+I +  I+ H G ++  S ++  T I   +P
Sbjct: 810 KGGTGLGLTIAKVIIDHHQGQITFFSREDVGTEIIISLP 848


>gi|256839468|ref|ZP_05544977.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738398|gb|EEU51723.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 846

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/529 (18%), Positives = 223/529 (42%), Gaps = 30/529 (5%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            I+ +    GE    ++ +    +  +      I   +     ++D+N  L   N++ ++
Sbjct: 190 DILSIAIERGEVQGLVEHTAMQVMKSETKFKI-IFDKMPWGAELYDENGVLVDINQADLD 248

Query: 338 LWEIDLAF-----LATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT 391
           ++ +         +  NP+  + + + L++   +   LN+     +    Y S    K  
Sbjct: 249 IFGVTREQAVGLNMFENPNIPKYVNQSLKNGKDIFFPLNYDFKVASQNGYYDSHHDSKTK 308

Query: 392 WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG 451
             L  G TL   +  N  G    +F++    +  E   N+L +++    D     +  + 
Sbjct: 309 HLLVKGVTLKDSLD-NIFGYIYIVFDDTENHIKREQIENSLAQLKVSV-DTGDSILWEYD 366

Query: 452 -PDGRIKL---------SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
             + ++ +         +N   +++                      R YN+     L  
Sbjct: 367 VENDKLTVDFGLNEDINNNEGLKAIHDYNFKNQEDYKS-SIHPDDFDRVYNKQFKPLLQG 425

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            I       R+ L G     + +V  Y      +  T    V+ T ++  +R    +   
Sbjct: 426 KINNFVAAYRRILNGKTFWFNSNVRSYK---FNDDGTPNRIVSYTSNITQQREKEIELIK 482

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           +++AD++K++F+ ++S+E+R+PL  I+GF++++          ++  Y++ I  ++ +LL
Sbjct: 483 VKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAE---IDDEVERQSYLDIIHKNNDLLL 539

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L++DILD + ++AG M  ++  + + D+  E+  + + KM   ++ +            
Sbjct: 540 QLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPS-DVVLIFDLGSPSVIVK 598

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D +R++Q+ S  ++NA+ F++KGS + +    +       VK+ G  I  +  + +F R
Sbjct: 599 TDERRVMQVISNFVNNAIKFTTKGS-ITIYYEIEGDFIRVCVKDTGIGISAENQRRIFER 657

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F+       ++G GLGL+I  + I   GG + + S +   +T    +P 
Sbjct: 658 FIKVDTF--QQGTGLGLTISRTIIEALGGKIGVDSEEGVGSTFWFTLPL 704


>gi|39997882|ref|NP_953833.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984827|gb|AAR36183.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 770

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 106/673 (15%), Positives = 224/673 (33%), Gaps = 68/673 (10%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
           ++     +     L           LAE   K ++       F+   D    L+   D +
Sbjct: 118 VEAAFLPALGQVILTFRDSAIFSRVLAELRQKSEECDT---YFRNSLD----LLCVADNS 170

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV------ 266
           G     N +++   E  G    + +G           +     +  +      V      
Sbjct: 171 GYFRRLNPAWE---EVLGFPLHELLGRKFIDLVHPDDREATMGAMSDLAHQRQVKDFTNR 227

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIA-- 320
             +  G+ +  +            +A DV+  I   ++L  + E    +   +    A  
Sbjct: 228 YRVRDGSYRWLEWRAAPAGDLVFAVARDVTDRILAQERLCRSEERYRLLFEEMMSGCALH 287

Query: 321 --IFDQNR-----YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
             I D++           N +F  +  +  A +        +LE +            + 
Sbjct: 288 ELICDRDGNPADYRFLAVNGAFERMTGLRAADIVGK----TVLEVM--------PGTERH 335

Query: 374 WKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
           W E    V  S  + + + +    G+   V      RG    +F ++T +  +E +    
Sbjct: 336 WIERYGDVALSGRSAEFEEYAGAIGRYYSVRAYCPERGKFAAVFNDITERRLMEDELRRQ 395

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR-----NIAATC 487
            +     +D++ + +A F  + R    + A   +           T+        +    
Sbjct: 396 EQSHRLVLDNIPDIIARFDRELRHLYVSAAITRVTGFPPEHFIGRTNREIGMPDELVDRW 455

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----------VLEYSIIPLPNAQ 537
               NE         +  ++   R        L+ +           V+ + I  L NA+
Sbjct: 456 DAAINEVFSSGREQRLEFTYQSPRGLRHFETTLIPERGADDSSAAVLVVNHDITELKNAE 515

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +  +N       ER + E+   L  ++   +SF   VS++LR+PL +I GF+ ++   
Sbjct: 516 LGMRQLNE----ELERRVGERTRELELSNRELDSFCSAVSHDLRAPLRHIAGFSRVVAED 571

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+      +  I   +  +  L+N++L L+        L    + L+ +  +V   
Sbjct: 572 YGDRLDHGGRDLLTRIEGGAQRMDTLINELLSLSR--TNRSPLECHPVNLSTIAMDVVTD 629

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARD 715
           +     +  +  ++  D        D   +  + S +L NA  F+S  + + +       
Sbjct: 630 LREAAPDRLVDTEIAPD---VMAQCDGNLIRVVLSNLLGNAWKFTSRTERARIEFGVIPS 686

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                F V++NG+    +    +F  F     R    G G+GL+ V+  I+ HGG +   
Sbjct: 687 GDQQTFFVRDNGAGFDMNFADKLFVPFQRLHARDDYEGTGIGLATVQRIIHRHGGKIWAD 746

Query: 776 SSDEGVTTINCRI 788
           ++ +   T    +
Sbjct: 747 AAADRGATFWFTL 759


>gi|21283174|ref|NP_646262.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486329|ref|YP_043550.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87162310|ref|YP_494137.1| staphylococcal respiratory response protein, SrrB [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|262049078|ref|ZP_06021955.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus D30]
 gi|21204614|dbj|BAB95310.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49244772|emb|CAG43208.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87128284|gb|ABD22798.1| staphylococcal respiratory response protein, SrrB [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|259162747|gb|EEW47312.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus D30]
          Length = 588

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 229 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 286

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 287 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 339

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 340 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 373

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 374 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 432

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 433 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 491

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 492 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 551

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 552 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 588


>gi|322706963|gb|EFY98542.1| histidine kinase 1 [Metarhizium anisopliae ARSEF 23]
          Length = 1293

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A++ K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  
Sbjct: 696 QRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNI 752

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +   
Sbjct: 753 VNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTVFNALKTLAVKANEKFLDLTYK 812

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--------FIFSV 723
            D  +    + D  RL QI   ++ NA+ F+  G   +    R N            F V
Sbjct: 813 VDSSVPDHVIGDSFRLRQIILNLVGNAIKFTEHGEVSLTIKERANQHEVGMGEYAIEFVV 872

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG + + S     
Sbjct: 873 EDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGDLWVLSEAGKG 932

Query: 782 TTINCR 787
           +  +  
Sbjct: 933 SQFHFT 938


>gi|289423124|ref|ZP_06424939.1| two-component sensor histidine kinase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156455|gb|EFD05105.1| two-component sensor histidine kinase [Peptostreptococcus
           anaerobius 653-L]
          Length = 435

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 144/363 (39%), Gaps = 21/363 (5%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +  +        I  ++ G+ V   + +I L+N   + L   +   +  G ++ ++    
Sbjct: 80  EVQSKNDQLDAIIKSVTNGILVVDINKKIYLANKEAKLLLGCDSQAIVEGEYVIDVI--- 136

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R     D       I  S   E K     +  +    +    I   +  T++   +VT+
Sbjct: 137 -RDGGLKDFLVYNIGINYSITKELKVEGNRIYRVKIDPVRMQDIDNLSISTVVNIEDVTE 195

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E               ++  F  +VS+EL++PLT+I GF + LK+         + 
Sbjct: 196 MRKLE--------------NVRRDFAANVSHELKTPLTSIQGFVETLKSKDEDISPEVRK 241

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           ++++ I   S  L  L+NDIL +++++ G ++L      + ++   V   +  K    ++
Sbjct: 242 RFLDIIENESRRLTILINDILLISSIE-GQVELTKEEFSIREVSEYVGDLLNEKAERYSV 300

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +              ++    +   +++N + ++ KG  V +K  +D+   +  +++NG
Sbjct: 301 SVNFDYSNIDDLIYTQKEYFKDLLINLVTNGIKYNQKGGKVEIKYRQDSTRLVLEIEDNG 360

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I +D    +F RF   +    +   G GLGL+IV+  +      + + S     T   
Sbjct: 361 IGIDKDDLDRIFERFYRVSRSRSQNIEGTGLGLAIVKHIVRSLDAKIFVESELGLGTKFT 420

Query: 786 CRI 788
              
Sbjct: 421 IEF 423


>gi|261250696|ref|ZP_05943270.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260937569|gb|EEX93557.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 709

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 19/308 (6%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDS-------VLEYSIIPLPNAQTMLTFVNVTDSV 549
            +  A  I      +       E L D        +L  S++ +     M    +     
Sbjct: 158 NEYLAGFIAEVQKHQMEFNRHKERLYDKQYVNLVIILVCSLLMIGVISWMYLNQSKLSRD 217

Query: 550 RAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             ER   L E  +   ++   K  F+ ++S+E+R+PL  +IG +         + + +  
Sbjct: 218 LKERSIRLEEAKQQAEESARAKARFLANMSHEMRTPLNAVIGLSQ---KEYYQASDKQTK 274

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++  I++S   LL L+N +LDL+ ++ G + L      L+DL+N  K     +M +  +
Sbjct: 275 DFISMINSSGQHLLKLINSVLDLSKIEQGKVVLEKEQFYLSDLINSCKNIF-VEMSKPEV 333

Query: 668 RIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNGDFIFSV 723
            +   SD  K     ADR +LLQ+ + +  NA+ F+S G   I   +    D    + ++
Sbjct: 334 DVFFRSDLEKDFKLFADRTKLLQVVNNLSYNAVKFTSHGHVDICSDVTHVGDQCYLVMTI 393

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  + ++    VFN F         Q  G GLGLSI +S ++L  G +S+ S  E  
Sbjct: 394 TDTGIGMNQEQIVKVFNEFTQADESITRQYGGTGLGLSICQSLVDLMNGTISVESELEKG 453

Query: 782 TTINCRIP 789
           T     +P
Sbjct: 454 TCFTVSMP 461


>gi|317046690|ref|YP_004114338.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
 gi|316948307|gb|ADU67782.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
          Length = 777

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 147/376 (39%), Gaps = 14/376 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E +T +   + +           +D   + V     D +    N A   L    E +L  
Sbjct: 138 EEMTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTGLSEKQLIG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         +    E+D       +  +++   +   G       +  E   +P  + 
Sbjct: 198 LTPRDIYDEDAATKVLETDEKVFRHNVSLTYEQWLQYPDG-----RKACFEIRKVPYYDR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               + +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 253 VGKRSGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLD 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q +Y++ I  S+  L N+ ND++++  ++   ++L+   +     L +++ 
Sbjct: 311 T---DLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPLDFTGFLADLEN 367

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                     ++  +  +  L     AD  RL QI   ++ NA+ F+ +G  V+  A   
Sbjct: 368 LSGLLAQPKGLKFVMSPELPLPHKISADGTRLRQILWNLIGNAVKFTQQGEIVVRVAYHQ 427

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           +    F V+++G  IP++    +F  +     +   +   G G+GL++        GG +
Sbjct: 428 DETLHFEVEDSGMGIPQEEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQAMGGDI 487

Query: 773 SISSSDEGVTTINCRI 788
           ++ S     +     I
Sbjct: 488 TVRSVQGQGSCFTVEI 503



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 27/206 (13%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVA-----ETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +LS+  +KL +E ++ DL       ET      +I  R+    A  R   +D + 
Sbjct: 81  EESRQRLSRLVDKL-EEMRTRDLELNQQMKETITQLNQEIADRIKAEQA--REQVMDKLR 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            E+        +L    S  +   D+   LV++R+        N + +  T   G+  ++
Sbjct: 138 EEMTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLT---GLSEKQ 194

Query: 236 AIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------VR 281
            IG   R ++ E+   +++ +   EK F   VS           G    ++I       R
Sbjct: 195 LIGLTPRDIYDEDAATKVLETD--EKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDR 252

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTH 307
           V    G  G   D+++     D L +
Sbjct: 253 VGKRSGLMGFGRDITERKRYQDALEN 278


>gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 1383

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 123/297 (41%), Gaps = 16/297 (5%)

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           G D    I  +    R++L        + ++ +  + + NA     +    +  RAE   
Sbjct: 292 GQDRPVGIFVAGISPRRALDSHYHQFFELMVNHISLAIANA-----YAYEEERKRAEA-- 344

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                 L + D  K  F  ++S+ELR+PLT I+G  + L  S   SL+      +     
Sbjct: 345 ------LTELDRAKTVFFSNISHELRTPLTLILGPIEALLHSDESSLSKGDRISLIMAQR 398

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +   L  LVN +L+ + ++AG ++  Y    L    +++     + M +  I   V    
Sbjct: 399 NVLRLQKLVNTLLEFSRLEAGRIQAFYQPTDLATFTHDLASVFRSAMEQAGIEFSVNCPP 458

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  DRQ   +I   +LSNA  F+ +G  + L  A         +++ G  I  +  
Sbjct: 459 LPELIYVDRQMWEKIVLNLLSNAFKFTFEGE-IRLSLAWTGERVKLDIQDTGVGIAPEEI 517

Query: 736 KSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F RF            G G+GLS+V   +NLHGG + ++S+ E  T     IPS
Sbjct: 518 PHLFQRFHRVLGVRSRTHEGSGIGLSLVRELVNLHGGTIEVNSTLEAGTCFTIYIPS 574



 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 127/716 (17%), Positives = 258/716 (36%), Gaps = 81/716 (11%)

Query: 131  TEKLRKEGQSFDLVAETQNDCAIK---IEGRVSGS-----------CAFLRILSLDGIYS 176
             ++LR+   + +L     +  A +   +EG  SG+               RI +   +  
Sbjct: 691  LQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFSARELLARIEATLKMAQ 750

Query: 177  ELAETTLKCKKLSNHISVFK----VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
               +   K +KL       +     +F+S+       D      + N    +  +     
Sbjct: 751  LRQQAAQKEQKLRAEAEAARQQITNIFESITDGFVAFDHQWRFTYVNQ---QAAQMLNQS 807

Query: 233  FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS----TLEHGNNKSYKIVRVLNSFG 287
             +  +G    +LF E I +          N   T++    +   G  + + +    +S G
Sbjct: 808  REDLLGNQIWELFPETIGQECYQQLHQAFNEQITLTFEEFSPVFG--RWFHLRVYPSSEG 865

Query: 288  EAGIAIDVSKEITV-------NDQLTHTYEILHNL--TVAIAIFDQNRYLQF---HNRSF 335
             +    D++K            ++L  + E L+    +  I++F QN+ L++   +N +F
Sbjct: 866  LSVYFRDITKAKENDLLRQKNEERLRQSEERLNIALSSAPISLFHQNQELEYTWIYNSAF 925

Query: 336  -VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              ++ ++         +++ELL     A  L E       K  +        T      L
Sbjct: 926  GYQINDV------IGKTDEELLG-AEQAQILTEI------KSGVLQSGIGRRTEIKITVL 972

Query: 395  PNGQTLHVIVTS--NPRG---GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
               +   + V    N  G   G      ++T     E              D     + +
Sbjct: 973  EEDKYFDLTVEPLRNLEGNIIGITAASVDITELKTAEQALRESESRFRVMADSAPVLIWM 1032

Query: 450  FGPDGRIKLSNPAF-----RSLWKTEENRLSPGTHIRNI---AATCSRYYNESDGWDLFA 501
             G DG     N  +     R+L +   N  + G H  +      T    +++  G+ +  
Sbjct: 1033 SGTDGLCNWFNQNWLEFTGRTLEQELGNGWAQGVHSDDYNFCLETYLSAFDQRIGFQMEY 1092

Query: 502  AIITSFDDER------KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             +  +  + R      K L     + S  +     I       ++      +  +    L
Sbjct: 1093 RLRRADGEYRWVLDNGKPLFTPEGIFSGYIGSCVEITEQKEANLILEEKAQELAQLNTTL 1152

Query: 556  TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            TE  E L+K +E  + F   VS++L++PL  I   +  ++      +  +  Q +E +  
Sbjct: 1153 TETAELLQKKNEELDQFTYIVSHDLKAPLRAIANLSQWIEEDLSDIIPPESQQQIELLRQ 1212

Query: 616  SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
                +  L+N++LD A +  G  +     + +  LL E+  S+A           +  D 
Sbjct: 1213 RVYRMDQLINNLLDYARI--GRSEATKERVEVAQLLEEIIDSLAP-----PPTFTLEIDL 1265

Query: 676  KLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNGSSIPEDM 734
             + + + ++  L Q+FS ++SN +    K    + +     N  + F + ++G  IP D 
Sbjct: 1266 PMPTLMTEKLLLSQVFSNLISNGIKHHGKDQGKLKISVQEQNNFYQFLIADDGQGIPVDY 1325

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +F  F +   +  +   G+GLSIV+  + + GG + +SS     TT +   P 
Sbjct: 1326 QEKIFAIFQTVKSKDNKDSTGIGLSIVKKIVEIQGGKIMVSSQVGEGTTFSFTWPK 1381


>gi|77748688|ref|NP_643337.2| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1194

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 12/248 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   + +  Q  Y 
Sbjct: 806  AWQLAVHKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---TQDPTQRSYT 862

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  +   LL LVND LDLA +++G ++L++    +  L+ EV+  +A    E  +R  
Sbjct: 863  ESIRRAGAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS 922

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
            +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 923  LEI-GLLGDITASGDSTRIRQILLNLLNNAIKFTERG-VVALKLTTLGSYQGLRFEVADT 980

Query: 727  GSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F RF          +  G GLGL+I +      GGH+ + S     T 
Sbjct: 981  GPGINAEQKARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTR 1040

Query: 784  INCRIPSK 791
                +P +
Sbjct: 1041 FVVDLPLR 1048


>gi|326798533|ref|YP_004316352.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
 gi|326549297|gb|ADZ77682.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
          Length = 369

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 140/322 (43%), Gaps = 12/322 (3%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL----EYSI 530
            PG     +A   S Y    D   LF   +++ + E+K +    E      L    +  I
Sbjct: 53  MPGMDGFEVAELISGYSKTVDTPILF---LSAVNTEKKFITQGYETGGIDYLTKPFDPDI 109

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + L        F         + AL ++ E  +  +  K+ F+   S+EL++PLT++ G+
Sbjct: 110 LLLKVKTFYRLFEQAQAMHEMQEALKQEIEHRKMLENKKDEFISIASHELKTPLTSVRGY 169

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             LL+       N K   Y+   SA    L  L++D+LD++ +++G MK N+  + +  L
Sbjct: 170 LQLLERLPEAKNNEKFKTYLGKTSAQLNKLRELIDDLLDISKIESGKMKFNFQPVSIEKL 229

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           ++   ++++    E+  +     D      +AD  RL Q+    L+NA+ +S     + L
Sbjct: 230 ISNTLENVSQMYPEHAFKRIGQVDS---IILADEMRLEQVLINYLTNAIKYSPNSKEIYL 286

Query: 711 KAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLH 768
           + A  ++      V++ G  IP D    +F++F        + +G+G+GL I +  I  H
Sbjct: 287 ETALTEDNKIQIGVRDFGIGIPSDKLNHLFDKFYRVEESSYKFQGLGMGLYICKEIIARH 346

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
            G   + S     +    R+P 
Sbjct: 347 HGEHGVESRLNEGSFFYFRLPL 368


>gi|296159891|ref|ZP_06842712.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           Ch1-1]
 gi|295889874|gb|EFG69671.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp.
           Ch1-1]
          Length = 1174

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 4/225 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ +V  +S+ELR+PL +I+G+  LL       L   +   V  I  S   LL LV+
Sbjct: 716 NRAKSRYVTGLSHELRTPLNSILGYAQLLLQG-TDELPPARRNAVATIYRSGEHLLALVD 774

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
            +LD+A ++AG ++LN + I L D + ++   +  +  +  ++ +  + G++   V  D 
Sbjct: 775 GLLDVARIEAGKLQLNVTEISLPDFVAQLAAMLEPQATDKGLQFEFQTSGRMADVVRIDE 834

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +R+ QI   ++ NA+ F+S GS V ++A+       F + + G  +P    + +F  F  
Sbjct: 835 KRVRQILINLIGNAIRFTSHGS-VKVRASYAWEAITFEIADTGPGMPASELERLFLPFER 893

Query: 745 NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            A   +   G GLGL+I      L GG++ + S     T    ++
Sbjct: 894 GAAAREHDHGAGLGLTICRLLTELMGGNLEVQSEVGKGTRFIVKL 938


>gi|256762633|ref|ZP_05503213.1| sensor histidine kinase [Enterococcus faecalis T3]
 gi|256683884|gb|EEU23579.1| sensor histidine kinase [Enterococcus faecalis T3]
          Length = 506

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 155/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 145 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 198

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 199 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 245

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 246 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 305

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L            +Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 306 LIDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 363

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 364 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 422

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 423 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 482

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 483 IAIDSHLGLGTTFTITLPL 501


>gi|21243756|ref|NP_643338.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
 gi|21109344|gb|AAM37874.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1189

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 112/248 (45%), Gaps = 12/248 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+ KQ  Y 
Sbjct: 806  AWQLAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDIKQRSYT 862

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  +   LL LVND LDLA +++G ++L+     +  L+ EV   +A    E  +R  
Sbjct: 863  ESIRRAGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVGALMAPLAQERGLRFS 922

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
            +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 923  LEI-GLLGDITASGDCTRIRQILLNLLNNAIKFTERG-VVGLKLTTLGSYQGLRFEVADT 980

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F RF             G GLGL+I +      GG + + S     T 
Sbjct: 981  GPGINAEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTR 1040

Query: 784  INCRIPSK 791
                +P +
Sbjct: 1041 FVVDLPLR 1048


>gi|83944202|ref|ZP_00956658.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
 gi|83845069|gb|EAP82950.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
          Length = 1088

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 106/519 (20%), Positives = 194/519 (37%), Gaps = 57/519 (10%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVA---IAIFDQNRYLQFHNRSFVELWEIDLAFLAT 348
           A        V      + +   N   A     + +QN  +   N  FV+        L +
Sbjct: 366 ARQAHARKDVLKSEVRSKQFYRNAVEAHTVFCMLNQNGAITHVNDQFVQASGRSREALIS 425

Query: 349 NPSNDELLEFLRS---ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
            P  D +    R     + LP  ++   WK  I              H  +G+ + +  +
Sbjct: 426 TPLVDVMDAGNRGVLTGDVLPAMMSGTPWKGTI------------VLHKTDGKAVWLQCS 473

Query: 406 SNP-------RGGTIWMFENLTVQVD--LETKYNTLVKVQGETIDHLSEGVAVFGPDGR- 455
             P             +  ++T   +   E ++N        T++ L + V VF P    
Sbjct: 474 FIPITDGEKQLREIAIVASDMTKTREGVSEARFNN-------TLELLQDHVVVFQPQTYA 526

Query: 456 IKLSNPA-FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +  +N +  R L + +E+    G  + ++               L          E ++ 
Sbjct: 527 VMYANASVARHLMRHDESDDWRGKSLSDLIGKRDYDSLRERCAGLIKGPERRVTWEVEAK 586

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G    +S   LEY        + +  + +V+    AE+A              K  F+ 
Sbjct: 587 SGITYDIS---LEYVCPAQDEPRFIAIYRDVSQRKVAEKA--------------KTEFLS 629

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            VS+ELR+PLT+I G   L+ +   G L  K    +   ++S   L+ L+N ILD+  ++
Sbjct: 630 TVSHELRTPLTSIKGALGLVLSGATGQLPDKMKGLITIAASSCDRLILLINSILDMEKIE 689

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFS 692
            G +     T+ L++ LN              + ++ +   D  +     D +RL+Q+  
Sbjct: 690 TGTLDFRMKTLNLSETLNTALVPNQLYAERAGVSLRRVDTPDDDVMLTYGDSKRLVQVLD 749

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQ 750
            +LSNA+ FS  G  +++           S+++ G+ I      SVF +F          
Sbjct: 750 NLLSNAVKFSEHGGEILIALHAVGDQLRISIRDFGTGIQAAAQASVFEKFTQGDSSDSRS 809

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + G GLGL+I +  I+ H G ++  S ++  T I   +P
Sbjct: 810 KGGTGLGLTIAKVIIDHHQGQITFFSREDVGTEIIISLP 848


>gi|108810018|ref|YP_653934.1| two-component sensor/regulator [Yersinia pestis Antiqua]
 gi|108813573|ref|YP_649340.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|145600962|ref|YP_001165038.1| two-component sensor/regulator [Yersinia pestis Pestoides F]
 gi|150260697|ref|ZP_01917425.1| two-component sensor/regulator [Yersinia pestis CA88-4125]
 gi|165936543|ref|ZP_02225111.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010515|ref|ZP_02231413.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213929|ref|ZP_02239964.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167426128|ref|ZP_02317881.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167469426|ref|ZP_02334130.1| two-component sensor/regulator [Yersinia pestis FV-1]
 gi|218927461|ref|YP_002345336.1| two-component sensor/regulator [Yersinia pestis CO92]
 gi|229836507|ref|ZP_04456673.1| two-component sensor/regulator [Yersinia pestis Pestoides A]
 gi|229840116|ref|ZP_04460275.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842197|ref|ZP_04462352.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904062|ref|ZP_04519175.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|270488949|ref|ZP_06206023.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294502331|ref|YP_003566393.1| two-component sensor/regulator [Yersinia pestis Z176003]
 gi|108777221|gb|ABG19740.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|108781931|gb|ABG15989.1| two-component sensor/regulator [Yersinia pestis Antiqua]
 gi|115346072|emb|CAL18940.1| two-component sensor/regulator [Yersinia pestis CO92]
 gi|145212658|gb|ABP42065.1| two-component sensor/regulator [Yersinia pestis Pestoides F]
 gi|149290105|gb|EDM40182.1| two-component sensor/regulator [Yersinia pestis CA88-4125]
 gi|165915659|gb|EDR34268.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165990605|gb|EDR42906.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204904|gb|EDR49384.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167054839|gb|EDR64641.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229679832|gb|EEO75935.1| two-component sensor/regulator [Yersinia pestis Nepal516]
 gi|229690507|gb|EEO82561.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696482|gb|EEO86529.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706191|gb|EEO92199.1| two-component sensor/regulator [Yersinia pestis Pestoides A]
 gi|262360411|gb|ACY57132.1| two-component sensor/regulator [Yersinia pestis D106004]
 gi|262364361|gb|ACY60918.1| two-component sensor/regulator [Yersinia pestis D182038]
 gi|270337453|gb|EFA48230.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294352790|gb|ADE63131.1| two-component sensor/regulator [Yersinia pestis Z176003]
 gi|320013880|gb|ADV97451.1| two-component sensor/regulator [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 939

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 123/256 (48%), Gaps = 9/256 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  +    ER  AL E   A  +A+  K+  +  +S+E+R+PL   +G  +LL
Sbjct: 364 DTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELL 423

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +    L++ Q +  E     S  LL ++N++LD + +++G M L+     L  LL++ 
Sbjct: 424 QNT---PLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA 480

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +I ++    ++ +       +      D  RL QI   +L NA+ F+ +G  + L+  
Sbjct: 481 MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQG-RIQLRVR 539

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R N    F+V++ G  I     +++F  F+        +G GLGL+I ++   + GGH++
Sbjct: 540 RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ--TSDHEQGTGLGLAIADNLAKMMGGHLT 597

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +  +  +P
Sbjct: 598 VFSEPGQGSCFSLCLP 613


>gi|329725290|gb|EGG61777.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21189]
 gi|329730872|gb|EGG67250.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21193]
          Length = 592

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 233 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 290

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 291 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 343

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 344 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 377

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 378 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 436

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 437 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 495

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 496 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 555

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 556 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 592


>gi|294637120|ref|ZP_06715431.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
 gi|291089691|gb|EFE22252.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
          Length = 999

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 157/366 (42%), Gaps = 31/366 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN    +  +                  
Sbjct: 393 RLEEHEQFNRKIVASAPVGISILRVSDGSNILSNELAHNYTRQFTPEDRQ---------R 443

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             R  NE        +++     + ++LQ +         E +I            V+V+
Sbjct: 444 IVRLLNEEQ-----VSVLDVITAQNQNLQISFVRSRYRNEEVAI---------CAMVDVS 489

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T    +L  + 
Sbjct: 490 TRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTK---TLPEEV 546

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  +S SS +LL ++NDILD + +++  +K+     V  +++  +  +    +    
Sbjct: 547 QRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVAREVIPHIIGNYLPLVVRKR 606

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +      D  R+ Q+ S +LSNA+ F+  G  +IL+A  ++    F +++
Sbjct: 607 LTLYCFIEPDVPAEISGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVNDFYLEFRIRD 665

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP      +F+ F       QR   G GLGL+I E  ++L  G +++ S     + 
Sbjct: 666 TGMGIPARDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAVESEPGLGSI 725

Query: 784 INCRIP 789
              R+P
Sbjct: 726 FTIRLP 731


>gi|146343763|ref|YP_001208811.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146196569|emb|CAL80596.1| putative sensor histidine kinase with a response regulator receiver
           domain and a phosphotransferase (HPt) domain
           [Bradyrhizobium sp. ORS278]
          Length = 850

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 123/252 (48%), Gaps = 12/252 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R  +      EA   A+  K++FV  +S+E+R+P+  ++G    L  +   +L+ +Q + 
Sbjct: 310 RWWQRHEHLIEAAEAANAAKSTFVAMMSHEIRTPMNAVLGLATTLLET---NLDPEQRRS 366

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  +   LL ++NDILD + +++G + L         L++     I  +    ++++
Sbjct: 367 VVAIHNAGDNLLEILNDILDFSKLESGQLSLEDIAFSAEALVHNTLSIIGPRASAKDLKL 426

Query: 670 KVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVK 724
           + +SD     + V D  R+ QI   ++SNA+ F+S G  VI    ++  +      ++V 
Sbjct: 427 RNVSDPAVPPALVGDAGRIRQILLNLVSNAVKFTSAGEVVITTRCIEKDQAKATVEWTVT 486

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  D   S+F  FV   +   RR  G GLGL+I +      GG ++++S+    +
Sbjct: 487 DTGIGIAADKIGSLFANFVQADNSISRRFGGSGLGLAICKRLTEQMGGEINVTSTLGKGS 546

Query: 783 TINCR--IPSKE 792
           T + R  +P  E
Sbjct: 547 TFSFRLTLPIAE 558


>gi|110680753|ref|YP_683760.1| two-component hybrid sensor and regulator, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456869|gb|ABG33074.1| two-component hybrid sensor and regulator, putative [Roseobacter
           denitrificans OCh 114]
          Length = 1115

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 5/253 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q+      V    R +R L +  E    A+  K  ++  +S+ELR+PL +I GF  +L+ 
Sbjct: 632 QSERLLFEVRAHERTDRKLQQAKEKAEAANTAKTRYMTGLSHELRTPLNSIYGFAQILER 691

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +   +  ++   +  I  SS  L  L+  +LD++ ++AG +K++   I L   L +V  
Sbjct: 692 DE--DIPIRRRNSITTIRRSSEHLAGLIEGLLDISRIEAGRLKISRDRINLRVFLQQVSS 749

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                  E N+   V     L    V D +RL QIF  +LSNA+ ++  G  V L+    
Sbjct: 750 IFKEAAREKNLTFTVDVSKFLPVWIVFDEKRLRQIFINLLSNAIRYTDAG-QVSLRITYR 808

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
           N   +  V++ G  I     K +++ F    +    +G GLGL+I +  + + GG + + 
Sbjct: 809 NEVAVIEVRDTGCGIMAADHKRIWDPFERGNNTVA-QGSGLGLTITKLLVEILGGEIEME 867

Query: 776 SSDEGVTTINCRI 788
           S+    +    R+
Sbjct: 868 STPGLGSVFRVRL 880


>gi|307152684|ref|YP_003888068.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982912|gb|ADN14793.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 584

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 4/257 (1%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +       +  +      E  +   + + IK+ FV  +S+ELR+PLT I+G++ LLK   
Sbjct: 185 IERQKMDEERNQLLLKEREARQEAEQLNRIKDEFVMMLSHELRTPLTAILGWSQLLKKRL 244

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +   NS Q   +E I  ++ +   L++D+LD+  +     KL    + L  L+     S+
Sbjct: 245 IHEQNSCQK-AIETIERNAKLESQLIDDLLDITKILTDKFKLKKDIVYLESLIKLTVDSL 303

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                   I I ++ +      + D +RL QIF  ++SN++ F+  G  + +K  R+   
Sbjct: 304 LLTAEAKEIPINIMIESPKLKVLGDERRLQQIFWNLVSNSIKFTEAGGLITIKLQREQEQ 363

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              ++ + G  I   +   VF+RF       QR   G+G+GLSIV   + LH G V   S
Sbjct: 364 AKITITDTGIGIKPALLPFVFDRFWQADSSSQRMAGGLGIGLSIVHRLVELHQGQVIAES 423

Query: 777 -SDEGVTTINCRIPSKE 792
             +    T    +P  +
Sbjct: 424 LGEGKGATFTVLLPLVQ 440


>gi|332558956|ref|ZP_08413278.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
 gi|332276668|gb|EGJ21983.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
          Length = 945

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 126/800 (15%), Positives = 251/800 (31%), Gaps = 91/800 (11%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
           + A ++  +      + ++ S+  + L     + I  D  +           R+      
Sbjct: 4   AWAARLGASRDQQRALEEERSRTQAALQVMPHMLIELDADERLLRGHPGWLDRLPTLGPM 63

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL--- 166
                 +++L      ++ +   ++   G               ++  R +G+  +L   
Sbjct: 64  APGQGLQDFLPADLATEVRRVLAEVETTGAPVS--------RDWQV--RQAGARVWLAIS 113

Query: 167 --RILSLDGIYSELAET----TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
             R+  L              T +                    LV   D    I W N 
Sbjct: 114 AARLPPLAPDRRPGHAVMICDTTELHAQRKQADRLGKFAQLTTNLVIVTDPHQRIEWVNA 173

Query: 221 SYKKNTETEGIVFQK----AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-GNNK 275
           ++++ T   G   +     A+ +  +        R+ +  A  +     V      G   
Sbjct: 174 AFEQQTGHSGPSVRGQPLCAVLQG-EPAPGGCGDRLRTMLAEGRTARAEVEATAACGRRF 232

Query: 276 SYKIV------RVLNSFGEAGIAIDVSKEITVNDQLTHTYEI-----------LHNLTVA 318
              +             G   +A D++      +QL                 +  L   
Sbjct: 233 WLDVSLQPLLDDEGALDGYMAVASDITAHKRQEEQLAAMAAEARATRARLAAAVDVLPDG 292

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKEN 377
            A FD    L   N  + + +    A +    S +++L     +  + E     + W   
Sbjct: 293 FAYFDAEDRLVVFNPQYRDCYPGAAAAIVPGASFEQILRQAVQSGDILEARGREEEWLAA 352

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
             + +      ++   L +G+ L VI    P GG + +  ++T     E +         
Sbjct: 353 RLAAHHRGSNQQEQ-QLADGRWLRVIERQTPDGGRVGLRVDVTALKLAEQRTRI---DFS 408

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI-AATCSRYYNESDG 496
            T+D   +G+A   P+GR    NPA R ++         G   R + +   + +   +  
Sbjct: 409 ATMDASQDGIAFTDPEGRYIYMNPAHREMFGIATEDEILGRSWRELYSGDVADHIATTAL 468

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
             L      S    R  L G     SD   E S+    +   +    +++  +R ++  T
Sbjct: 469 PALL-----STGGWRGELIGRRRDGSDLPQEVSLTLKADGGIICISRDISKRLREQQERT 523

Query: 557 EKNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
              E L+  +  E+       ++++L + L  I G   L++  + G+      + +    
Sbjct: 524 RLREELQMAQRREVIGQLASGLAHDLNNLLAAIGGSALLIRELQPGAAEVHAQRILAATE 583

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            +      LV   L L     G  + N S I L  LL E    +   +     R+ +   
Sbjct: 584 QAG----ALVRRFLTL-----GKRQSNRSRIDLCPLLQEAADLVQAGLRNRT-RLTLALP 633

Query: 675 GKLGSFVADRQRLLQIFSKILSN---AMDFSSK---GSTVILKAA--------------- 713
                  AD   +LQ+   ++ N   A+  +     G  + +  A               
Sbjct: 634 DAPIWIEADPTDILQVVLNLVINARDAISTAPPREGGHEITVALAPAGPAQLVQTYAVGA 693

Query: 714 --RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              D      +V ++G  I   M   VF  + S        G GLGL+IV   +  + G 
Sbjct: 694 PCADRRYVSMTVSDSGPGIEPAMQAKVFQPYFSTKGAA---GTGLGLAIVTGVLTANHGA 750

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S+    T      P +
Sbjct: 751 IALQSAPGEGTRFTVLWPVE 770


>gi|330502153|ref|YP_004379022.1| cache sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328916439|gb|AEB57270.1| cache sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 829

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 115/245 (46%), Gaps = 6/245 (2%)

Query: 549 VRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            R ER    L   ++  ++A   K+ F+  +S+ELR+PL  I GF  L++  +    N +
Sbjct: 449 QRLERNATQLQRASQEAQEASRAKSQFISSMSHELRTPLNAIQGFAQLMRMQQ-APQNKQ 507

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            + Y+E I  +S  L  LV DILD +++ +   +L  + +    L++E    +A +    
Sbjct: 508 DTDYLEEILLASRHLNQLVGDILDWSSLQSDQPRLEMARVDAVTLMSECADLVAPEAEAR 567

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
            + + +    +    +AD +RL Q+   +LSNA+ ++ KGS V L   + +      + +
Sbjct: 568 GLTLHLSFPERSLQVLADPRRLRQVLLNLLSNAIKYTPKGS-VTLSCMQMDKHVRLMISD 626

Query: 726 NGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
            G  I  ++   +F  F       G  +G G+GLS+ + +  L  G + + S     +  
Sbjct: 627 TGMGIAPELQPLLFEPFQRLGQENGAIQGTGIGLSLCKEYAALMNGEMGLYSEPNKGSQF 686

Query: 785 NCRIP 789
              +P
Sbjct: 687 WIDLP 691


>gi|327439016|dbj|BAK15381.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 458

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     + L    + + K D++KN F+  +S+ELR+PLT I G+ ++L  S  G    + 
Sbjct: 217 ELGEMSKTLNYMADEIVKTDQLKNDFISSISHELRTPLTGIKGWAEML-ESPEGLTEKEI 275

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +  +  I++ S  L+ LV D+L+ +  ++  ++L+ +      L+ EV   + +K +E N
Sbjct: 276 NFGLRMINSESDRLIKLVEDLLNFSRYESNRIELHPTKFAYATLIEEVTLQLQSKANEKN 335

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           IR+K+ S     S  AD  ++ Q+    L N + FS   S +++K    NG  I  +++ 
Sbjct: 336 IRMKLNS--TPVSIYADEDKIRQVLLNTLENGIKFSPHNSEIVIKQYESNGKAICIIRDE 393

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I E+  + + N F     +    G GLGL+I  + I  HGG + ++S     T +  
Sbjct: 394 GIGIKEEQIQHIMNSFYKADVKSV--GAGLGLAISRTIILKHGGTIEVNSVYGKGTEVFI 451

Query: 787 RIPS 790
            +P 
Sbjct: 452 ELPL 455


>gi|253568655|ref|ZP_04846066.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842728|gb|EES70808.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 513

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 209/518 (40%), Gaps = 56/518 (10%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNR--YLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            D     ++IL NL   I + D        + N+   EL        A   ++ E+    
Sbjct: 21  QDYYHSLFDILDNLPFPIMVKDIQDSFRYYYWNKE-SELQSGIKREEAVGCTDYEIYGEE 79

Query: 360 RSANKLPEQLNWKTWKENIFS---VYKSSETHKDTWHLPNGQTLHVIV------TSNPRG 410
           R          ++   E++     VY++ E++       +G     I           + 
Sbjct: 80  RGRR-------YRDVDESLVQAGKVYRAEESYSTV----DGIVHDTIAVKSIIKWKEKKK 128

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETID-------HLSEGVAVFGPDGRIKLSNPAF 463
             +    ++T     E +     +   + ++        ++ G+            N   
Sbjct: 129 WLLVTRWDITRLKTYERELIAAKEELEKALNKQKLALKSVNFGLIYIDK-------NYLV 181

Query: 464 RSLWKTEENRLSPGTHIR--NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
           +    T+   L  G H     I    S   +   G   F   I      R ++      +
Sbjct: 182 QWEETTQIASLVKGRHYTPGQICYKTSALRDTPCGQCAFQKAIEQGKIIRHTI-----RI 236

Query: 522 SDSVLEYSIIPLPNAQT------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                E +  P+ + +       +L F ++T+ V+ ++ L E  E   +++ +K++F+ +
Sbjct: 237 DQVDFEVTATPVYDNEGTEIIGGLLRFEDITEKVKMDKMLQEAKEKAEESNRLKSAFLAN 296

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  IIGF+D++  +       ++ +Y++ +S+++ +LL L++DILDL+ ++A
Sbjct: 297 MSHEIRTPLNAIIGFSDMICQT---GEEEEKQEYMKIVSSNNELLLQLIDDILDLSKIEA 353

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G M+   +   +NDL+  + + +  K    ++ I      +      DR RL Q+     
Sbjct: 354 GTMEFTLAPTDINDLMEGICRQMQEKNTSPDVAITFTEKAEECILNTDRVRLSQVIINFT 413

Query: 696 SNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           +NAM F+ KGS  +  +      +  F VK+ G  IP D    VF RFV        +G 
Sbjct: 414 NNAMKFTPKGSIQMGYRIDEAKDEIYFYVKDTGIGIPADKINEVFERFVKLNTFA--KGT 471

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLGL+I    +   GG +   S +   +    R+P  +
Sbjct: 472 GLGLAICRVIVERLGGTIGADSKEGEGSCFWFRLPITQ 509


>gi|170022784|ref|YP_001719289.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis YPIII]
 gi|169749318|gb|ACA66836.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
          Length = 778

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 148/371 (39%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N +   L    E +L   T   
Sbjct: 143 REQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRSMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   +     + +++      
Sbjct: 313 LDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    +AD  RL QI   ++ NA+ F+ +G  V+      N   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +       G R   G G+GL++ +      GG +++ S+
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGVGSCFTLTI 503



 Score = 39.5 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N S +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRSMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|22124428|ref|NP_667851.1| two-component sensor/regulator [Yersinia pestis KIM 10]
 gi|45440264|ref|NP_991803.1| two-component sensor/regulator [Yersinia pestis biovar Microtus
           str. 91001]
 gi|21957214|gb|AAM84102.1|AE013653_2 putative response regulator [Yersinia pestis KIM 10]
 gi|45435120|gb|AAS60680.1| two-component sensor/regulator [Yersinia pestis biovar Microtus
           str. 91001]
          Length = 929

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 123/256 (48%), Gaps = 9/256 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  +    ER  AL E   A  +A+  K+  +  +S+E+R+PL   +G  +LL
Sbjct: 354 DTLNEQYDTLEMKVKERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELL 413

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +    L++ Q +  E     S  LL ++N++LD + +++G M L+     L  LL++ 
Sbjct: 414 QNT---PLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQA 470

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
             +I ++    ++ +       +      D  RL QI   +L NA+ F+ +G  + L+  
Sbjct: 471 MLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQG-RIQLRVR 529

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R N    F+V++ G  I     +++F  F+        +G GLGL+I ++   + GGH++
Sbjct: 530 RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQ--TSDHEQGTGLGLAIADNLAKMMGGHLT 587

Query: 774 ISSSDEGVTTINCRIP 789
           + S     +  +  +P
Sbjct: 588 VFSEPGQGSCFSLCLP 603


>gi|299149007|ref|ZP_07042069.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
 gi|298513768|gb|EFI37655.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
          Length = 1353

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 117/267 (43%), Gaps = 6/267 (2%)

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRS 582
            +++ +  I +     +  F  +  S+ AE  +     E   + +++K  F  ++S+ELR+
Sbjct: 790  AIVLFLAIFIGFITFVFRFFWMRKSMEAELEIERRDKEHQEEINQMKMRFFINISHELRT 849

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PLT I+     +           Q +Y++    ++  LL+LVN ++D    + G+ +L  
Sbjct: 850  PLTLILAPLQEIINKISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKA 906

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                 + L+ +             I   + S+ +    + D   L  I + +LSNA  ++
Sbjct: 907  KRENAHQLIQDNFLFYDKLARHKKITYTLHSELEDKEELFDPNYLELIVNNLLSNAFKYT 966

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
              G ++ +    +N   +  V + G  IP +    +F RF       +  G G+GLS+V+
Sbjct: 967  ESGQSITVTLKEENNWLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQ 1024

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
              + LH G + + S +   +T +  +P
Sbjct: 1025 RLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|228925838|ref|ZP_04088922.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228833853|gb|EEM79406.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 463

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSQIHISVIEENKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 ITMEDEGEGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFTISLPS 455


>gi|298482826|ref|ZP_07001009.1| two-component system sensor protein [Bacteroides sp. D22]
 gi|298271026|gb|EFI12604.1| two-component system sensor protein [Bacteroides sp. D22]
          Length = 541

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 108/517 (20%), Positives = 211/517 (40%), Gaps = 47/517 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              N     +++IL NL   I + D   +    + N+       I     A   ++ E+ 
Sbjct: 45  KKTNHSYRFSFDILDNLPFPIFVKDIANDFRYYYWNKESAVQSGISSEE-AIGHTDYEIY 103

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGTI 413
              R          ++   + +    K     ++ +  P+G    T+ V    +  G   
Sbjct: 104 GEERGE-------KYRNIDKELVQEGK-VYRKEEKYITPDGITHDTIAVKSIISWEGEKR 155

Query: 414 WMF---ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           W+      +T   + E +           +K Q   +  +  G+     + R+      +
Sbjct: 156 WLLATRWEITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRV-----QW 210

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +              I    S   NE  G   F   I      R ++      + D
Sbjct: 211 EETRQIASLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTI-----RVDD 265

Query: 524 SVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              E +  P+   +        +L F N+T+ ++  R L E  E   +++ +K++F+ ++
Sbjct: 266 VDFEVTATPVFGDEKETEIIGGLLRFENITEKLKMNRMLQEAKEKAEESNRLKSAFLANM 325

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF++++  ++       + ++V+ IS+++ +LL L++DILDL+ ++AG
Sbjct: 326 SHEIRTPLNAIVGFSEMVCQTEEEEE---KQEFVKIISSNNILLLQLIDDILDLSKIEAG 382

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   +N+L+  + + +  K    +++I             DR RL Q+     +
Sbjct: 383 TMEFTFAQTDINELMEGICRQMQEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTN 442

Query: 697 NAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           NA+ F+SKGS  +  +    + +  F VK+ G  IP D    VF RFV        +G G
Sbjct: 443 NALKFTSKGSIEMGYRIEEASDEIYFYVKDTGIGIPADKIDKVFERFVKLNSF--IKGTG 500

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+I    +   GG +   S +   +    +IP  E
Sbjct: 501 LGLAICRVIVERLGGVIGAESKEGEGSCFWFKIPRTE 537


>gi|283781401|ref|YP_003372156.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283439854|gb|ADB18296.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 501

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 158/368 (42%), Gaps = 18/368 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
              +   +   E ++ LS+ V      G I LSN + + L K              + A 
Sbjct: 142 RHASRQFEQLTEILNGLSDPVVAIDQFGEITLSNQSAQRLLKLP------------VEAD 189

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKS--LQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                 + D  +   +++      R     Q   EL  D   ++       A       +
Sbjct: 190 THAALEQLDLCEELVSLLGETRKRRVPAVRQAETELSDDQGRKHWFRITCKALAGDEQSS 249

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +   A   LT+ +   +   +    FV  VS+E+++PL++I  + +LL   +    ++
Sbjct: 250 GNEQHGAVAVLTDIS-GQKAIQKRNAEFVSAVSHEMKTPLSSIRAYVELLADDEAED-DA 307

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
            + ++++ I + +  L  L++++L+LA ++AG++ +      LN+LL E    +     +
Sbjct: 308 TREEFLKVIESQTDRLQRLIDNLLNLARIEAGVVAVQKLPQSLNELLGEAVNLLQPAAQQ 367

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
            NI +           +ADR  LLQ    ++SNA+ ++  G +V +++     D +F V 
Sbjct: 368 KNITLSSELSPMYLGVLADRDTLLQAAINLISNALKYTQPGGSVQVRSRLAASDVVFEVT 427

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFIN-LHGGHVSISSSDEGVT 782
           ++G  + ED CK VF +F       +   G GLGL +V+  +  +H G V + S     +
Sbjct: 428 DSGVGLSEDDCKRVFEKFYRVKKDREMASGTGLGLPLVKHIVEDIHNGRVEVESKLGEGS 487

Query: 783 TINCRIPS 790
           T    +PS
Sbjct: 488 TFRLVLPS 495



 Score = 38.4 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 10/145 (6%)

Query: 292 AIDVSKEITVN-----DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           A  +S    V       Q     EIL+ L+  +   DQ   +   N+S   L ++ +   
Sbjct: 130 ARHLSSIAEVRARHASRQFEQLTEILNGLSDPVVAIDQFGEITLSNQSAQRLLKLPVE-- 187

Query: 347 ATNPSNDELLEFLRSA-NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           A   +  E L+      + L E    +           S +  +  W     + L     
Sbjct: 188 ADTHAALEQLDLCEELVSLLGETRKRRVPAVRQAETELSDDQGRKHWFRITCKALAGDEQ 247

Query: 406 S--NPRGGTIWMFENLTVQVDLETK 428
           S  N + G + +  +++ Q  ++ +
Sbjct: 248 SSGNEQHGAVAVLTDISGQKAIQKR 272


>gi|317130174|ref|YP_004096456.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475122|gb|ADU31725.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 475

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 5/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            ++    + L++  + +  F+ H+S++LR+P+T I G++ ++K +K         + +  
Sbjct: 232 ESIQSMTKQLKEYRDSRRHFISHISHDLRTPITYIKGYSAVMKDAKTVE-KEDLKRNLNV 290

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI--RIK 670
           I   +T +  LV+D+  L  ++ G +KL    + +   L  + +S A    +  I  RI+
Sbjct: 291 IYNEATRMEQLVSDLFLLTKLEEGKIKLEMELVPIGVWLENLYESRALMFDQKRIKHRIE 350

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +    +    + D  R+ Q    ++ NA+  + K   + L   +D+ +    VK+ G  I
Sbjct: 351 IDKHCQELMIMMDSYRMEQALINLIENAIRHTPKDGEIELILRKDDNEVTVCVKDTGCGI 410

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +     ++ RF        R   G GLGL+IV+  +  H G V + S     TT +  +
Sbjct: 411 SKHDLPHIWERFYKADASRNRNDSGTGLGLAIVKEVVEAHQGKVDVYSKLGKGTTFSIHL 470

Query: 789 PSKE 792
           P  E
Sbjct: 471 PLLE 474


>gi|251771346|gb|EES51927.1| integral membrane sensor signal transduction histidine kinase
           [Leptospirillum ferrodiazotrophum]
          Length = 458

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 18/304 (5%)

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           ES    L  ++  +F  E K LQ    L+       SI  L +   ++    +       
Sbjct: 157 ESRMIGLAVSLGRAFRLEGKQLQAHQSLMRHRQ---SIAALSSGFGLVLLFVI------- 206

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            A   ++E     +  +  F   +S+ELR+PL  I G++ L+ + +     S Q    E 
Sbjct: 207 AAALWRHEMALLRERARQEFFARMSHELRTPLNAITGYSQLILSGEDREKESGQD--AEK 264

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  +S  L  L++D+ D+A +    + L      L +L+ E    +   +  +  R+ V 
Sbjct: 265 ILIASRHLEALIDDLFDMAKIGNRKLLLEPRPFRLEELVEEAADMLRPAIEGSGNRLVVR 324

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGSS 729
                G  V DR+R+ QI   +L NA  F+  G  + L ++ D      F   V + G  
Sbjct: 325 RVPLEGPVVTDRRRVRQILINLLENARKFTDHGE-IRLSSSPDPDAPHFFRVIVSDTGIG 383

Query: 730 IPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +  D    +F  F         +  G GLGL+I  S   L GG +++ S     ++   R
Sbjct: 384 MTPDQTSRIFEPFTQADENTRLRYGGTGLGLAISRSLARLMGGTITVESHPGKGSSFTLR 443

Query: 788 IPSK 791
           +P +
Sbjct: 444 LPKE 447


>gi|229029709|ref|ZP_04185782.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271]
 gi|228731597|gb|EEL82506.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271]
          Length = 444

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 120/244 (49%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   +  + +A+++KN F+  VS+E+R+PLT I G+++ LK +       + 
Sbjct: 206 ELGELAHSLNHMSNKIEQAEQMKNEFIASVSHEIRTPLTGIKGWSETLK-TVDHLTEEEI 264

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     E  
Sbjct: 265 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQ 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++     +      + DR +L Q+F  I+ NA+ +S K   V ++A ++ G  +  VK+ 
Sbjct: 325 MQFIKTIER--IELMGDRNKLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDE 382

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LHGG +S  S +   TTI  
Sbjct: 383 GVGIAKEHLPYIEQSFYQINNHAT--GAGLGLAIVKKMVELHGGTLSFISKEGIGTTILI 440

Query: 787 RIPS 790
           ++P 
Sbjct: 441 KLPL 444


>gi|332307454|ref|YP_004435305.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
            4H-3-7+YE-5]
 gi|332174783|gb|AEE24037.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1224

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/391 (18%), Positives = 157/391 (40%), Gaps = 21/391 (5%)

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
             +   E +  +   E       +     +D++ +   +    G I+  N  + S   T  
Sbjct: 698  IMRTAELVIKRRQNERSLRLSEERFRAVVDNVPQLAWMANAQGEIEWFNQRWLSYTGTTL 757

Query: 472  NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--- 528
                     +N+      +++ +    +FA    S +             +D    +   
Sbjct: 758  E--------QNLNGGWKAHHHPAHEEAVFAKFAASLEQGIDWEDTFPLRGADGKFRWFLS 809

Query: 529  SIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             +  + +      +   T  ++T+  +    LT+    L  AD+ K+ F+  +++ELR+P
Sbjct: 810  RMNAIYDQNGKLIRFFGTNTDITEQRKMAEKLTKLTNKLSTADKRKDEFIATLAHELRNP 869

Query: 584  LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
            L  +    +L++   L +  +     +  +    T ++ L++D+LD++ +    + L   
Sbjct: 870  LAPLRNSMELIRN--LQTDPASMQTALTTMERQVTQMVRLIDDLLDISRISKDKLSLKRQ 927

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +VL D++    + +    +     +++    +     AD  RL Q+   +L+NA  ++ 
Sbjct: 928  HVVLKDIVEHAVEVVTPYANRLKHTVQINLPEQPIHLFADPARLAQVLGNLLNNACKYTP 987

Query: 704  KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            K   + L   + +     SVK+NG  I ++M   VF+ F            G+G+GLS+V
Sbjct: 988  KSGFISLTVTQSDEQVHISVKDNGLGIEQEMLNQVFDLFTQVDQHLEQSEGGLGIGLSLV 1047

Query: 762  ESFINLHGGHVSISSSD-EGVTTINCRIPSK 791
            +  + +HGGHV+  S      +     +P K
Sbjct: 1048 QRLVEMHGGHVNCISDGLGRGSEFIVSLPCK 1078



 Score = 41.5 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 12/155 (7%)

Query: 169 LSLDGIYSELA-ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           L +    +EL  +     + L      F+ + D++  L W  +  G+I W N  +   T 
Sbjct: 695 LDIIMRTAELVIKRRQNERSLRLSEERFRAVVDNVPQLAWMANAQGEIEWFNQRWLSYTG 754

Query: 228 TEGIVFQKAIGES--RKLFKEEIKKRMISSSALEKNFCETVSTL-EHGNNKSYKIVRVLN 284
           T          ++      +E +  +  +S     ++ +T       G  + + + R+  
Sbjct: 755 TTLEQNLNGGWKAHHHPAHEEAVFAKFAASLEQGIDWEDTFPLRGADGKFRWF-LSRMNA 813

Query: 285 SFGEAGIAI-------DVSKEITVNDQLTHTYEIL 312
            + + G  I       D++++  + ++LT     L
Sbjct: 814 IYDQNGKLIRFFGTNTDITEQRKMAEKLTKLTNKL 848


>gi|323524713|ref|YP_004226866.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323381715|gb|ADX53806.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 1489

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/520 (17%), Positives = 188/520 (36%), Gaps = 50/520 (9%)

Query: 298  EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS------ 351
            E  +  QL     ++  +   +   D        N ++ E   +    +    +      
Sbjct: 573  ERELALQLNFQETMMQMVPYPLVAKDLQGRYIAVNGAYEEACGLGREAVLGRTTMEVQTW 632

Query: 352  ---NDELLEFLR-SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN 407
               N  +L+ +R    +  +    +   E      +            +GQ +       
Sbjct: 633  GEANSRVLDQMRLDLLEGGDMAQVELQFERSPGDVRHGLFWTSICRGNDGQPV------- 685

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
                ++    ++T     E +     +   +    L    AV     R      +F  + 
Sbjct: 686  ---CSLGTMVDITDIRRAEMRARDTERRLFDVTRSLP---AVVFQLRRTADGAYSFPYIG 739

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG----TLELLSD 523
                  L  G         C  + +     +   A + +  +    L+        L  +
Sbjct: 740  GAPGLLLRQGRRRD----ACREHADFERICEEDRAFVMAELERSARLETPVLVEFRLGPE 795

Query: 524  SVLEYS---IIPLPNAQTMLTFVNVT-----DSVRAERALTEKNEALRKADEIKNSFVQH 575
               +++   ++P   A   + +         +  RAE  L    +    A   K+ F   
Sbjct: 796  QEFKWTRAEVVPRREADGSVVWSGYWVDASVEHARAE-ELARARDVAEAASRAKDDFFAM 854

Query: 576  VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            +S+E+R+P+  ++G  ++L+ +    LN+ Q + +  I  S+  LL +++D+LD + ++A
Sbjct: 855  MSHEIRTPMNGVLGLVEVLERT---PLNADQGEMLGMIHESAGALLQILDDLLDYSKIEA 911

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKI 694
            G + +    I L +L++     +A + HE  ++++V     +  +   D  RL Q+   +
Sbjct: 912  GRLTIEAEPIDLRELVDNAVGLLAGRAHEKGLKVRVDIASDVAATLRGDSVRLRQVLFNL 971

Query: 695  LSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            L NA+ F+  G    S  ++    +       V++ G  I  D+   +F  FV       
Sbjct: 972  LGNAIKFTPAGQVDVSVAVVAQTSELQTIEVIVEDTGIGIAADVQAKLFEPFVQAESSTT 1031

Query: 751  RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL+I    I L  G +++ S     T +  R+
Sbjct: 1032 RRFGGTGLGLTICRKLIELMNGSLALESEPGRGTRMTVRL 1071



 Score = 46.1 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/319 (10%), Positives = 90/319 (28%), Gaps = 33/319 (10%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            G    + + +   +  E+       ++L+  ++  + +   + + +  +D  G  +  N
Sbjct: 548 IGVALLVTLRAYLLLQREVRRRKKTERELALQLNFQETMMQMVPYPLVAKDLQGRYIAVN 607

Query: 220 ISYKKNTE-------TEGIVFQKAIGESRKLFKEEIKKRMISSS--ALEKNFCETVSTLE 270
            +Y++              +  +  GE+     ++++  ++     A  +   E      
Sbjct: 608 GAYEEACGLGREAVLGRTTMEVQTWGEANSRVLDQMRLDLLEGGDMAQVELQFERSPGDV 667

Query: 271 HGNNKSYKIVRVL--NSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQ 324
                   I R          G  +D++     E+   D     +++  +L    A+  Q
Sbjct: 668 RHGLFWTSICRGNDGQPVCSLGTMVDITDIRRAEMRARDTERRLFDVTRSLP---AVVFQ 724

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW--------KTWKE 376
            R       SF  +       L      D   E         E   +           + 
Sbjct: 725 LRRTADGAYSFPYIGGAPGLLLRQGRRRDACREHADFERICEEDRAFVMAELERSARLET 784

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM--FENLTVQVDLETKYNTLVK 434
            +   ++     +  W         V+      G  +W   + + +V+     +      
Sbjct: 785 PVLVEFRLGPEQEFKWTRA-----EVVPRREADGSVVWSGYWVDASVEHARAEELARARD 839

Query: 435 VQGETIDHLSEGVAVFGPD 453
           V         +  A+   +
Sbjct: 840 VAEAASRAKDDFFAMMSHE 858


>gi|228987920|ref|ZP_04148028.1| hypothetical protein bthur0001_45870 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771843|gb|EEM20301.1| hypothetical protein bthur0001_45870 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 484

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGKLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVAVSIDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +  HGG +   S     T+I   +
Sbjct: 444 LGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|60681652|ref|YP_211796.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis NCTC 9343]
 gi|60493086|emb|CAH07867.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis NCTC 9343]
          Length = 511

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 96/499 (19%), Positives = 192/499 (38%), Gaps = 37/499 (7%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL----RSA 362
           ++  IL  +   +  F+  + +   N    E  +I        PS  ++ + +    +  
Sbjct: 30  YSARILETMQTGVVFFNTEQIISGINNLACEDLQIPRD-----PSGHKITDIISIIHQEK 84

Query: 363 NKLPEQLNWKTWKENIFS------VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +  PE +      E          + +S ET    +   +G  + +       G  +  F
Sbjct: 85  DIFPELIARLKSSETDMEKLPIDTLIRSLETKVQFF--ASGCIMQLET-----GRYLLAF 137

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRL 474
            N   +V  E   + ++                F       L +  + S       +  +
Sbjct: 138 RNTMDEVTHEHLLSMILARTKIFP-------WFFDLKRNKMLIDAHWFSYLGIPAGDCEI 190

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSII-P 532
           +       +         ++    L    I  SF    +   G+ E  S+  +  S    
Sbjct: 191 TIEKFFSRVHPNERDMLADALQKQLSEKEIPDSFSYRLQRGDGSWEWFSEQSMYLSKTND 250

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + +    ++ +    E  L       +++D +K++F+ ++S+E+R+PL  I+GF++
Sbjct: 251 GSPYRIVGVCHSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSN 310

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+    +     +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL 
Sbjct: 311 LIAGGIVDLDTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLT 370

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E+ Q    ++ +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A
Sbjct: 371 EIYQKYENRIPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYA 429

Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             D+G+     V + G  IP D  K VF RF         +G GLGLS+ ++ +   GG 
Sbjct: 430 LSDHGEKIYVFVADTGCGIPSDQYKKVFERFYKINSF--VQGAGLGLSVCKTIVEGLGGT 487

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++ S  +  +  +  +P 
Sbjct: 488 INVYSQLKEGSRFSVILPL 506


>gi|152974826|ref|YP_001374343.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023578|gb|ABS21348.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 459

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 117/250 (46%), Gaps = 6/250 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +  +  R  RA  +   +L   D  +  F+ +VS+ELR+PL+ I G+++ +      
Sbjct: 211 TISSEDEIGRLGRAFNKMATSLENEDIKRKEFLANVSHELRTPLSYIKGYSEAILDGVAK 270

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               KQ ++++ I   +  +  LV+D+LDLA ++     L    IV   L+ +V ++   
Sbjct: 271 G---KQEKFMQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLQKQPIVFAQLIEDVVETYEW 327

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           K  E  + I +  D  +   + D  R+ Q+   IL NA+ ++++   + ++  +   D  
Sbjct: 328 KCIEKQVEISMELDPDII-VMIDEDRMQQVLHNILDNAIRYTNEKGKITVQLQKLKKDCQ 386

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             + + G  I  +  + +  RF         Q  G GLGL+IV+  +++H G   I S  
Sbjct: 387 LKIMDTGIGIEREHVEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVHIHDGKWKIESEK 446

Query: 779 EGVTTINCRI 788
              TT+  ++
Sbjct: 447 GKGTTVMIQL 456


>gi|238751334|ref|ZP_04612827.1| Aerobic respiration control sensor protein arcB [Yersinia rohdei
           ATCC 43380]
 gi|238710392|gb|EEQ02617.1| Aerobic respiration control sensor protein arcB [Yersinia rohdei
           ATCC 43380]
          Length = 799

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 147/377 (38%), Gaps = 16/377 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V            N A   L    E +L   T   
Sbjct: 164 REQAQVELGQQSALLRSFLDASPDLVYYRNEANEFSGCNRAMELLTGKSEKQLVGLTPKD 223

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 224 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 278

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 279 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 333

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      
Sbjct: 334 LDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLL 393

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    + D  RL QI   ++ NA+ F+  G  V+      +   I
Sbjct: 394 VQPKGLKFILEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQHGKIVLRVWREGSDRLI 453

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +             G G+GL++ +      GG +++ S+
Sbjct: 454 FEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 513

Query: 778 DEGVTTINCRI--PSKE 792
               +     I  P+++
Sbjct: 514 QGVGSCFTLTIKAPAEQ 530



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 60/153 (39%), Gaps = 19/153 (12%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             +D +  E+        +L    ++ +   D+   LV++R++A +    N + +  T  
Sbjct: 152 QVVDKLKEEMGHREQAQVELGQQSALLRSFLDASPDLVYYRNEANEFSGCNRAMELLT-- 209

Query: 229 EGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV 280
            G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++ 
Sbjct: 210 -GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFELR 266

Query: 281 ------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                 RV    G  G   D+++     D L +
Sbjct: 267 KVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 299


>gi|149910443|ref|ZP_01899084.1| sensor histidine kinase FexB [Moritella sp. PE36]
 gi|149806502|gb|EDM66473.1| sensor histidine kinase FexB [Moritella sp. PE36]
          Length = 782

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 155/382 (40%), Gaps = 19/382 (4%)

Query: 416 FENLTVQVDLETKYNTLVKVQ----GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           F++L  +V    +   +V+ +       ID   + V      G+    N A  +L    E
Sbjct: 133 FKDLENEVFHREQAQLIVEERSALVRSFIDSSPDLVYYSNEQGQFSGCNLAMEALTGKIE 192

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L   T         +  +  +D   L   +  +++       G       +  E   +
Sbjct: 193 KELIGLTPFDAFDTEIAAKFAATDKAVLNTKLPETYEQWLTYPDG-----HKACFELRKV 247

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P    +     V        ER   +  +AL KA   K +F+  +S+ELR+PL  ++G +
Sbjct: 248 PFFGQRNEYIGVLGYGRDITER--KKYQDALEKASRDKTTFISTISHELRTPLNGVVGLS 305

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L  S   SLN++Q Q++  I  S+  + N+ NDI+DL   D    ++    I     L
Sbjct: 306 RILLDS---SLNAEQRQHLNTIYVSAHTMGNIFNDIIDLDKFDRRKFEIVNQPIEFRSFL 362

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VI 709
           N+++     ++ +  + +     G +  F+ AD  R+ Q+   ++SNA+ F+  G   + 
Sbjct: 363 NDIETLALLQVEQKGLVLAFDIFGDIPDFINADGTRMRQVLWNLVSNAVKFTDSGEISIR 422

Query: 710 LKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
           +  + +  +     F V++ G  I  D    +F  +       +  G G+GLS+ +S + 
Sbjct: 423 IFTSEEANNKIGLTFEVEDTGIGISADGQDKIFAMYYQEQGSKRATGTGIGLSVAKSLMT 482

Query: 767 LHGGHVSISSSDEGVTTINCRI 788
             GG + +SS     +      
Sbjct: 483 AMGGDIWVSSELGKGSCFTIEF 504


>gi|116049927|ref|YP_791264.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585148|gb|ABJ11163.1| putative sensor histidine kinase protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 881

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 123/726 (16%), Positives = 244/726 (33%), Gaps = 83/726 (11%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG-----RVSGSCAFLRILSLDGIYSELA 179
           + L +   KL++  Q+     E+    + +  G      V       R  +L     EL 
Sbjct: 30  VALEEERHKLQRINQALIGRIESSAAQSDEAYGAFQYSVVLAEQVRERTDALSQTMLELK 89

Query: 180 E----TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
                 +    +            +S+       D    I+  N  ++       +  + 
Sbjct: 90  ASNQLLSDARLRAETAHQHLLDAIESISDAFVLFDPQQRIVLFNERFR----ALWVDSRA 145

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAID 294
            IG   +  +     R       E+   +  +     + +  ++  R     G A +  D
Sbjct: 146 RIGPGMRRAELHRLARSGGLIVEEQRGGDQQTLYRLRDERWLRMSERPTRDGGLAVLYSD 205

Query: 295 VSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           V++         E  +  +       + NL+  +A+   +  L+  NR F+EL  +  A 
Sbjct: 206 VTEIKLSETARREQALAQKSHLLQRAVDNLSQGVAMVGADGVLELWNRRFLELCGL--AP 263

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +A + +  E++         P   +            + S        L +G+ L +   
Sbjct: 264 IAGHRAFAEVMAESELPLLTPRSQD-----------SQGSPLSAREQRLFDGRVLEIRTH 312

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P GG +  F ++T +           +      D +   +A    +   + +N  +  
Sbjct: 313 ALPTGGFVNTFTDITERYRHAEALRASERWIRLITDQVPALIAYLSDELVYEFTNKVYEE 372

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            ++     +  G  +R++         E       A    +F+    +L G    +  S 
Sbjct: 373 WYRWPSGSML-GRCLRDVHGAEHCRRLEPYFERALAGESVTFEIAETALSGEERYMQRSY 431

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------------- 565
           +         A   +   ++T+  R   AL +  + L +                     
Sbjct: 432 VPNRQADGRVAGLFVLIRDITERRRTAEALHQAYQNLEQRVRERTAELTTLNDQFKREIH 491

Query: 566 -------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                              +  K  F+  VS++L  PL     FT  L+    GS     
Sbjct: 492 ERSQVEARLREAKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALQER--GSATRDN 549

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  IS S   + NL+  ++D++ +DAG++  + +   L +LL  +            
Sbjct: 550 EALVNNISHSLEDVENLLGTLVDISKLDAGVITPDIAPFELGELLGNLAAEYRQVAASEG 609

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+  ++ G L    +D+Q L +I   +LSNA+ ++ +G  V+L   R        V + 
Sbjct: 610 LRLDFVACGAL--VRSDQQLLARILRNLLSNAIRYTPRG-RVLLGCRRHRQRLSIEVWDT 666

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F     +   Q RG+GLGL+IV+    + G  V + S     +  
Sbjct: 667 GVGIAADKLGEIFQEFKRGESQRCHQDRGLGLGLAIVDKIARMLGHRVRVGSLPGKGSCF 726

Query: 785 NCRIPS 790
              +P 
Sbjct: 727 AIEVPL 732


>gi|299755920|ref|XP_002912146.1| dual-domain HisK/Mak2 protein kinase [Coprinopsis cinerea
            okayama7#130]
 gi|298411441|gb|EFI28652.1| dual-domain HisK/Mak2 protein kinase [Coprinopsis cinerea
            okayama7#130]
          Length = 2334

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 122/252 (48%), Gaps = 16/252 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A     +  E   KA +IK++F+  +S+ELR+P ++  G  DLL  ++   LN  QS+ V
Sbjct: 1776 ALETARKSREDALKATKIKSNFLASMSHELRTPFSSFYGLLDLLSGTE---LNPGQSEIV 1832

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            +    S  +LL +++ ILD + ++A  +KL  S  ++ +++ +  + +     +  + + 
Sbjct: 1833 QTAKQSCELLLKIIDSILDYSKLEASAVKLEPSGFLVENIIADCMELLLPMAAKK-LDLS 1891

Query: 671  VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------DFIF 721
               +  + S+V AD  R+ Q+   ++ NA+ F+++G  V +  + DN         +  F
Sbjct: 1892 FNIEPDVPSWVFADYARIRQVLMNLIGNAVKFTAQG-YVRVTCSVDNSTKVVPGEVNLKF 1950

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
             +++ G  +       +F  F    +   RR  G GLGLSI    + L GG + + S   
Sbjct: 1951 EIQDTGIGLSASDVDHLFMPFQQADNSSTRRFGGTGLGLSISRQLVKLMGGAIGVQSDLN 2010

Query: 780  GVTTINCRIPSK 791
              +T    IP K
Sbjct: 2011 SGSTFWFTIPVK 2022


>gi|293395635|ref|ZP_06639918.1| sensor histidine kinase [Serratia odorifera DSM 4582]
 gi|291421954|gb|EFE95200.1| sensor histidine kinase [Serratia odorifera DSM 4582]
          Length = 904

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 97/548 (17%), Positives = 208/548 (37%), Gaps = 46/548 (8%)

Query: 254 SSSALEKNFCETVSTLEHGNN-KSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEIL 312
             S ++     T   +  G     ++ +R+LN+    GI  D ++   +   L     ++
Sbjct: 137 RHSPVQAALLTTYPGVALGEAATLHEALRLLNAGAAQGIVCDATQAALLASNLYPGRLLV 196

Query: 313 HNLTVAIAIF------DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
             L   ++        DQ+  L   N++   L       +A + +   LL        LP
Sbjct: 197 RPLPAIVSTQRLWLAADQHALLDRINQAIDAL----PDGMAQSINQRWLLN-AALNGMLP 251

Query: 367 EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE 426
                + W   +  +  +              +L +I          ++   +  +   E
Sbjct: 252 APSTARHWLTPLAGISAAL-------------SLFLIG---------FLLSEIFRRRRAE 289

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-RSLWKTEENRLSPGTHIRNIAA 485
                 +K     ++ +   + V  P G+I   N A   SL  + +  +           
Sbjct: 290 RGLRDALKYWQTLLNSIPTPLLVCDPLGKITHCNQALLTSLALSHQQVIGSTLEHFTAHH 349

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
             +      +      ++   F D    ++G    ++  +  YS   +     +L + ++
Sbjct: 350 PIAPPIGHQERIAAIGSMQPQFSDRTMVIRGEQREIAQWLAAYSDSRMTPQGLLLGWYDI 409

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           +   R ER L +  +    A   K+ F+  +S+E+RSP+  I+G  +L       + +S 
Sbjct: 410 SQRKRLERDLADALQQATDASREKSDFLARMSHEIRSPMNAILGILELESQRPDAADSS- 468

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +    A+S  LL +V D+LD++ ++AG + L      L  LL ++ ++ AT   + 
Sbjct: 469 ----LPIAYAASRQLLQIVGDVLDISKIEAGELHLQPQPTALYPLLTQLLETYATLAAQK 524

Query: 666 NIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN---GDFI 720
            +R+    +      ++ D  +L Q+ + +LSNA+ ++ +G   + +     +       
Sbjct: 525 ALRLDSDIEAAWQCDYLLDGTKLTQVLNNLLSNAIKYTERGFVALQVSVQSQDTQYDRVT 584

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           FS+ ++G  I   M + +   +V           GLGL+I    + L GG + I S+ + 
Sbjct: 585 FSITDSGIGIAPQMQQKILQPYVQADPNTPAS-TGLGLAICTQLVQLLGGELQIDSAPQH 643

Query: 781 VTTINCRI 788
            +  +  +
Sbjct: 644 GSRFSFTL 651



 Score = 38.8 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 88/272 (32%), Gaps = 36/272 (13%)

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLS---KAT 131
           LL       IV D              R+ +      + +   WL    +  L    +A 
Sbjct: 166 LLNAGAAQGIVCDATQAALLASNLYPGRLLVRPLPAIVSTQRLWLAADQHALLDRINQAI 225

Query: 132 EKL-----RKEGQSFDLVAETQNDCAIKIEGRV-----SGSCAFLRILSLDGIYSELAET 181
           + L     +   Q + L A            R      +G  A L +  +  + SE+   
Sbjct: 226 DALPDGMAQSINQRWLLNAALNGMLPAPSTARHWLTPLAGISAALSLFLIGFLLSEIFRR 285

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
               + L + +  ++ L +S+   +   D  G I   N +      +  +  Q+ IG + 
Sbjct: 286 RRAERGLRDALKYWQTLLNSIPTPLLVCDPLGKITHCNQA---LLTSLALSHQQVIGSTL 342

Query: 242 KLFKE--------EIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKIVRVLNSF 286
           + F            ++R+ +  +++  F +  + +  G  +       +Y   R+    
Sbjct: 343 EHFTAHHPIAPPIGHQERIAAIGSMQPQFSDR-TMVIRGEQREIAQWLAAYSDSRMTPQG 401

Query: 287 GEAGIAIDVSKEITVNDQLTHTYEILHNLTVA 318
              G   D+S+   +   L    + L   T A
Sbjct: 402 LLLGWY-DISQRKRLERDL---ADALQQATDA 429


>gi|222106443|ref|YP_002547234.1| Signal transduction histidine kinase [Agrobacterium vitis S4]
 gi|221737622|gb|ACM38518.1| Signal transduction histidine kinase [Agrobacterium vitis S4]
          Length = 784

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/408 (22%), Positives = 164/408 (40%), Gaps = 19/408 (4%)

Query: 393 HLPNGQTLHVIVTSNPRGGTIWMFENLTVQV--DLETKYNTLVKVQGETIDHLSE-GVAV 449
            L  GQ+L +   +    G +        ++    E       +     +D + + G+  
Sbjct: 238 RLAQGQSLRLAEHATDEIGELSSALEEASRLLTAREEALRESEERFRLLVDGVHDYGIFG 297

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              DG +   N     +     + +  G H         R           AA     +D
Sbjct: 298 LDADGTVVSWNAGAERIKGYRADEI-IGQHFSRFYPLEHRDTRPLQEMAQAAAF-GRVED 355

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTM-----LTFVNVTDSVRAERALTEKNEALRK 564
           E   L+        +V+   +  L + Q           +VTD  R E AL        +
Sbjct: 356 EGWRLRKDGSRFWANVV---MTALRDKQGQLRGFSKITRDVTDRKRTEEALLTARRDAER 412

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K+ F+  +S+ELR+PL +++GF  +L    +   +    + +  I  +   LL+L+
Sbjct: 413 ASQAKSEFLSRMSHELRTPLNSVLGFAQIL---DMDIEDRDMRESLAQILRAGRHLLSLI 469

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-D 683
           +++LD+A ++AG M+L    + L+D++ E     A       + I+V  +    + VA D
Sbjct: 470 DEVLDIARIEAGRMELLIEPVGLDDIVTEAIALAAPLAEPKQLTIRVEMEAAGQTIVAVD 529

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           R+R LQ+   +LSNA+ F+  G  + L A    N      + + G  I +     +F  F
Sbjct: 530 RRRFLQVLLNLLSNAVKFNRDGGEIRLSAQLLTNTMIAIDIADTGCGIADVDRDRLFKPF 589

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               A R    G GLGL++  + +    G + ++ SD   +  +  IP
Sbjct: 590 ERLGADRNATTGTGLGLALSVNLMQAMDGDLFLTESDATGSVFSIHIP 637


>gi|217977833|ref|YP_002361980.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503209|gb|ACK50618.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 494

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/359 (24%), Positives = 153/359 (42%), Gaps = 13/359 (3%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           + + + V +    G +       +SL+      L       ++       + ++ G   F
Sbjct: 98  ESVGDVVLLHDRTGAVLSIAGNRQSLFGLPAADLMGRGFFEHVHVADRPIFLKAIGEASF 157

Query: 501 -------AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                  A  + +   +R      + L  D          P    +  F NVTD+   + 
Sbjct: 158 SDAPITVALRLRASSLDRGDYAEPVFLWLDMRARRCGKHSPERSAVAIFRNVTDAHWRQD 217

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQSQYVEY 612
            L     A    D  K+ F+ +VS+ELR+PL  IIGF+++L  +     +  KQ +Y   
Sbjct: 218 ELDSAGTAA---DLSKDHFLANVSHELRTPLNAIIGFSEILGDADQAPRDPAKQREYAAI 274

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL++VN ILDL+ + +G   L+ S   +  L+      +  +  + +I +K +
Sbjct: 275 IHRSGQHLLSVVNSILDLSKIHSGSFDLSPSHFGVAPLVEVCCDMVKLEAQDRHIELKRV 334

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               L   V D++   QI   +LSNA+ F+     V +  + ++   + +V ++G  I E
Sbjct: 335 CPEGLPEIVGDKRACKQIVINLLSNAVKFTPAHGEVSISVSIEDETLLIAVADSGVGINE 394

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                + N F        R   G GLGLSIV   + LHGG ++++S  +  T +  R+P
Sbjct: 395 QDLARLGNPFFQARGALDRPFEGTGLGLSIVSGLVGLHGGSIAVASEPDQGTCVLVRLP 453


>gi|156977380|ref|YP_001448286.1| sensor protein LuxQ [Vibrio harveyi ATCC BAA-1116]
 gi|156528974|gb|ABU74059.1| hypothetical protein VIBHAR_06167 [Vibrio harveyi ATCC BAA-1116]
          Length = 594

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 138/337 (40%), Gaps = 10/337 (2%)

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           L+N A +      ++       +R          N       F  +  S + +   +   
Sbjct: 160 LTNAALQGDNPQSQSISLFLNRLRQSERKIELLTNRILEGHYFEFVEYS-EHQLLEIAQR 218

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              L+   +  SII L  A  + T   V         L E  E   +A + K+ F+  +S
Sbjct: 219 ESRLTWLFVLLSIILLVTAFVLQTQHRVNKLKHLNDELIEATEKAERAAKAKSQFLATMS 278

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+  ++G + ++             ++V+ I  S   L+ ++NDILD + V+   
Sbjct: 279 HELRTPMNGVLGISQIIANETQEKTT---KEHVKIILDSVQHLMTILNDILDFSKVEENR 335

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILS 696
           + L  +   L  +L  V  +I   + E NI++ V ++      F  D  R+ QI   +  
Sbjct: 336 LDLEAAPFNLLQVLTPVCSAIQPLVEEKNIQLYVENEVPDTIEFKGDCARVRQILFNLAG 395

Query: 697 NAMDFSSKGSTVILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--R 752
           NA+ F+  G  V+++A  D      + SV + G  IP D    +FN F        R   
Sbjct: 396 NAVKFTGDGH-VLIRAELDEQKRCLLISVNDTGIGIPGDKQGCIFNSFEQADTSTTRKFG 454

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+IV+    L  G + + S +   T     +P
Sbjct: 455 GTGLGLAIVKKLTELMSGEIKLKSVESIGTQFVVELP 491


>gi|16127218|ref|NP_421782.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221236019|ref|YP_002518456.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|13424622|gb|AAK24950.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220965192|gb|ACL96548.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 574

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 120/257 (46%), Gaps = 9/257 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + TF + T + R   AL        KA E K++F+  +S+E+R+P+  ++  TD L  + 
Sbjct: 169 LYTFTSATANNRRIAALEAAEAQALKASEAKSAFLAMISHEIRTPMNGVLAMTDALSRAD 228

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           LG   ++Q+  +     S   L+ L+ND+LD++ ++AG +++      L +LL +++   
Sbjct: 229 LGPDQARQTALL---KRSGEDLMTLLNDVLDISRIEAGKLEIECQPFDLPELLGDLRALW 285

Query: 659 ATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
                +  + + +     L ++ + D  RL QI   ++SNA+ F+  G  V L A     
Sbjct: 286 TPAATDKGLDLVLTIAPGLDAYRLGDPTRLRQILGNLVSNAVKFTRSGG-VALSARPGEA 344

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G  +F V + G  +  +    +F  F        RR  G GLGLSI      L  G ++
Sbjct: 345 PGAVVFDVADTGIGMTPEQQGRLFQSFSQADASIARRFGGSGLGLSICSQLATLMDGAIT 404

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     +T    +P 
Sbjct: 405 VDSDLGSGSTFRLTLPL 421


>gi|323936532|gb|EGB32820.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
          Length = 1180

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 501 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 560

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 561 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 619

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 620 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 679

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 680 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 737

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 738 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 797

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 798 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 857

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 858 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 917

Query: 789 PSK 791
           P +
Sbjct: 918 PVE 920


>gi|156974588|ref|YP_001445495.1| hypothetical protein VIBHAR_02306 [Vibrio harveyi ATCC BAA-1116]
 gi|156526182|gb|ABU71268.1| hypothetical protein VIBHAR_02306 [Vibrio harveyi ATCC BAA-1116]
          Length = 576

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E   +A++ K  F+  +S+E+R+PL +++G  D+L+ S   +L   QS+ +  +
Sbjct: 200 QLAKAREEAERANQSKPEFLAMMSHEIRTPLNSVLGMLDILRQS---TLTESQSEVLNQM 256

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+ +LL +++DILDL+ +++   +L+     L D +  V           N+  +   
Sbjct: 257 ECSADLLLAIISDILDLSKIESVSFRLSEQWTNLRDAVTLVISQQKQVAISKNLSFEYQC 316

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +      +  D  RL Q+   ++ NA  F+  G  + +     +G+ + SV + G  IP+
Sbjct: 317 NLDNNKQYWIDSTRLSQVLFNLIGNASKFTDFGG-INVSVIERDGELVISVVDTGIGIPQ 375

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  F        RR  G GLGL+I +  + +  G +S+ S +   +    +IP
Sbjct: 376 SKIGHLFTAFHQGDSSITRRFGGTGLGLAITKHLVEMMRGTISVKSEENVGSHFEIKIP 434


>gi|311746257|ref|ZP_07720042.1| sensor histidine kinase/response regulator [Algoriphagus sp. PR1]
 gi|126576490|gb|EAZ80768.1| sensor histidine kinase/response regulator [Algoriphagus sp. PR1]
          Length = 845

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 120/243 (49%), Gaps = 7/243 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +  L    +   +  + K  F+ ++S+E+R+PL  I G+  +L+ S    L++ Q  Y+ 
Sbjct: 334 QENLLLSQQKAEQLAKSKQEFLANMSHEIRNPLHVIQGYQSVLEKSH---LDTAQQSYLR 390

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  +S  L+ +V+D+LD + ++AG +KL ++     +L   ++     +  E N+    
Sbjct: 391 MIGFASQTLMEIVDDVLDFSKLEAGKLKLEFTPFDPVNLFGSLQNFFELQADEKNLGFHW 450

Query: 672 ISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
             D  +    + D+ RL QI + +LSNA  F+ +GS + +      G     +K+ G  +
Sbjct: 451 SVDLPEDKWLLGDQLRLKQILNNLLSNAFKFTEEGS-INVGVKWVEGILTVEIKDTGIGM 509

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            E++ + VF  F    +   R   G GLGL+IV   ++L  G ++ SS     T I+  +
Sbjct: 510 SEEVLEKVFLEFDQADNSISRKFGGTGLGLAIVHRLVHLMHGEINTSSKVGVGTCISISL 569

Query: 789 PSK 791
           P +
Sbjct: 570 PME 572


>gi|294625970|ref|ZP_06704581.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292599708|gb|EFF43834.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 969

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 12/248 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   + +  Q  Y 
Sbjct: 581 AWQLAVHKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---TQDPTQRSYT 637

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +   LL LVND LDLA +++G ++L++    +  L+ EV+  +A    E  +R  
Sbjct: 638 ESIRRAGAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS 697

Query: 671 VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
           +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 698 LEI-GLLGDITASGDSTRIRQILLNLLNNAIKFTERG-VVALKLTTLGSYQGLRFEVADT 755

Query: 727 GSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I  +    +F RF          +  G GLGL+I +      GGH+ + S     T 
Sbjct: 756 GPGINAEQKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTR 815

Query: 784 INCRIPSK 791
               +P +
Sbjct: 816 FVVDLPLR 823


>gi|262195772|ref|YP_003266981.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079119|gb|ACY15088.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 876

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 12/248 (4%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E+ L     +  +A   K+ F+ ++S+E+R+P+  ++G   LL  ++L    ++Q  Y E
Sbjct: 198 EKRLRRAVLSAEEASLAKSEFLANMSHEIRTPMNGVLGMLGLLLDTRLA---AEQRDYAE 254

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
              AS+  LL+++NDILDL+ V+AG M        L   + +V   +A       + + V
Sbjct: 255 TARASAMTLLDIINDILDLSKVEAGQMAFEPVAFDLRSAIEDVFDQLAVLAAPKALELIV 314

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKN 725
             D +  S  V D  R+ Q+   ++ NA+ F+ +G  V L+A  +       D   SV++
Sbjct: 315 RYDPETPSRIVGDAGRIRQVLVNLVGNAIKFTQRGH-VQLRATSEELDDGSVDLKLSVED 373

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I E   + +F++F        R   G GLGL+I  + ++  GG + + S     +T
Sbjct: 374 TGPGISESEREQIFDKFRQLDVSSTRVHGGTGLGLAICRALVHGMGGEIGLESRRGEGST 433

Query: 784 INCRIPSK 791
               IP +
Sbjct: 434 FWFSIPVE 441


>gi|159899882|ref|YP_001546129.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892921|gb|ABX06001.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 733

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/527 (19%), Positives = 218/527 (41%), Gaps = 38/527 (7%)

Query: 293 IDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL--AFL 346
            DV +     ++L +  E     L ++  A+   D +  + F N     +       A  
Sbjct: 212 RDVRRRELAANELRNQREWFAVTLASIGDAVLTTDIDGKISFMNHIATTITGWPEQQALG 271

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
            +  +   + + + +  +L   +N    +  I ++  S    +   ++    +   I   
Sbjct: 272 QSIHTVAAIFDPI-TKQELAHPVNTALAQRQIVTLSNSVVMRQGNGYVAIEDSAAPIYDR 330

Query: 407 NPRG-GTIWMFENLTVQVDLE---TKYNTLVKVQGETID-----HLSEGV------AVFG 451
             +  G + +F +++ +   E       TL      TID       S  V      A  G
Sbjct: 331 EQQVIGAVMVFRDVSERYRDEFGQRLLRTLHNRLAATIDLAQVLETSTAVPTPSFSAACG 390

Query: 452 PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC---SRYYNESDGWDLFAAIITSFD 508
               +        S     E  L+   H    AA     ++  +++      +AII  F 
Sbjct: 391 LYLLLDADEEPLSSYSSAHEPLLNWQQHPAFAAALANSQAQIIDQALPEPYHSAIIIPFR 450

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
           D+ + L G +  L D    +  I +  A+ +         +             + A  +
Sbjct: 451 DQHQ-LSGAIVFLHDQH-RFDQIDVELAEELS------QRMVLAIEQAYLYRQAQNAVRL 502

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDL-LKT-SKLGSLNSKQSQYVEYISASSTILLNLVND 626
           ++ F+   S+EL++PLT ++G + L L+   +L  ++ +  + ++ I A ++ +  +V  
Sbjct: 503 RDVFLSIASHELKNPLTTLLGQSQLSLRRLERLNLVDERLQRSLQAIEAQASRMNKMVTA 562

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LD++ ++ G + + +  I L  LL ++   +A  +  + +     S  +    V D  R
Sbjct: 563 LLDVSRIETGQLDIQHDQIDLAQLLQQLVNDLAITIDHHQLSYHCTS-SQPIQVVGDPIR 621

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+F  +++NAM +S + + V+++A R+    I  ++++G  IP +   ++F RF   +
Sbjct: 622 LEQVFVNLINNAMKYSPEQTEVLVRADRNAQQAIVQIRDHGIGIPAESIPNLFTRFYRAS 681

Query: 747 H--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  R    G+G+GL +V+  ++LHGG + +SS     +     +P +
Sbjct: 682 NAARSHVAGLGIGLFVVKEIVDLHGGSIEVSSQVGQGSLFTVYLPLQ 728



 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 15/203 (7%)

Query: 402 VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
           ++ T    G       ++  +     +     +    T+  + + V     DG+I   N 
Sbjct: 197 LVATGFVIGTMALTERDVRRRELAANELRNQREWFAVTLASIGDAVLTTDIDGKISFMNH 256

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
              ++    E + + G  I  +AA       +     +  A+           Q  +  L
Sbjct: 257 IATTITGWPEQQ-ALGQSIHTVAAIFDPITKQELAHPVNTALA----------QRQIVTL 305

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           S+SV    ++   N    +         R ++ +         ++  ++ F Q +   L 
Sbjct: 306 SNSV----VMRQGNGYVAIEDSAAPIYDREQQVIGAVMVFRDVSERYRDEFGQRLLRTLH 361

Query: 582 SPLTNIIGFTDLLKTSKLGSLNS 604
           + L   I    +L+TS      S
Sbjct: 362 NRLAATIDLAQVLETSTAVPTPS 384


>gi|121705968|ref|XP_001271247.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
 gi|119399393|gb|EAW09821.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
          Length = 1943

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 15/294 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            T      K       L+    +E S      A    T  ++ D    ER L    + L  
Sbjct: 1175 TEIRLRSKGGDYRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNRAMQQLNH 1234

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              E K  F  ++S+E+R+PL  I+G    +  ++   L++ Q + ++ I  SST L  LV
Sbjct: 1235 QMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQ---LDTDQRRMLDTIQNSSTNLRELV 1291

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
            ++ILD++ V+AG M L  S   +  ++ +V  +++++  +  + +  + D       + D
Sbjct: 1292 DNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVSSRALDKGLELNYLMDVDVPPMVIGD 1351

Query: 684  RQRLLQIFSKILSNAMDFSSKGST---------VILKAARDNGDFIFSVKNNGSSIPEDM 734
            R R+ Q+   ++ NA+ F+++G           V +          F V + G       
Sbjct: 1352 RFRIRQVLINLVGNAVKFTAQGEVYIRCSMYCDVSVPLKETELMLNFDVVDTGKGFSARD 1411

Query: 735  CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + +  RF         Q  G GLGL + +  + +HGG ++ SS +      + 
Sbjct: 1412 SERLMQRFSQLGENASQQNAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGAKFSF 1465


>gi|91778396|ref|YP_553604.1| periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691056|gb|ABE34254.1| Periplasmic sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 1173

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 4/225 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ +V  +S+ELR+PL +I+G+  LL       L   +   V  I  S   LL LV+
Sbjct: 716 NRAKSRYVTGLSHELRTPLNSILGYAQLLLQG-TDELPPARRNAVATIYRSGEHLLALVD 774

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
            +LD+A ++AG ++LN + I L D + ++   +  +  +  ++ +  + G++   V  D 
Sbjct: 775 GLLDVARIEAGKLQLNVTEISLPDFVAQLAAMLEPQATDKGLQFEFQTSGRMADVVRIDE 834

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +R+ QI   ++ NA+ F+S GS V ++A+       F + + G  +P    + +F  F  
Sbjct: 835 KRVRQILINLIGNAIRFTSHGS-VKVRASYAWEAITFEITDTGPGMPASELERLFLPFER 893

Query: 745 NAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            A   +   G GLGL+I      L GG++ + S     T    ++
Sbjct: 894 GAAAREHDHGAGLGLTICRLLTELMGGNLEVQSEVGKGTRFIVKL 938


>gi|218674838|ref|ZP_03524507.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli GR56]
          Length = 332

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 3/243 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607
            +       +      A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N +Q 
Sbjct: 41  QQLRAEAQSRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQR 100

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A +     +
Sbjct: 101 EYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQAKSKGV 160

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    +V + G
Sbjct: 161 TLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSVDAAARDGILKLTVSDTG 220

Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D    +   FV   N +  +  G GLGLS+V+  + LHGG+ +I+S     T I 
Sbjct: 221 IGIAADKLAMLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIASQPGEGTIIT 280

Query: 786 CRI 788
             I
Sbjct: 281 IEI 283


>gi|326391352|ref|ZP_08212891.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992615|gb|EGD51068.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 446

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 120/236 (50%), Gaps = 7/236 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++    + L   D+ +   + ++S++L++PL  I G++++L     G    K+ +Y+  
Sbjct: 215 KSMNTMVKQLSITDKFRKDLIANISHDLKTPLGLIRGYSEMLLD-YYGDDKEKREKYLNT 273

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  +  LV+D+L L+ + +G++++    I L  L+ E       ++ E NI +K+ 
Sbjct: 274 VIKETERMSKLVDDVLQLSKLQSGMVEIKEEPIDLEKLIFETLDIFEIQILEKNIEVKL- 332

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +      +ADR+ + ++   I+SNAM     G  + + A   + + +  V + G  IP+
Sbjct: 333 -NNLKLKVIADREMIKRVIINIISNAMASMENGGILTITAEPQDKEILIKVSDTGCGIPQ 391

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              + +F+R+     +G + G GLGL+IV+  + LHG    I S ++  TT    +
Sbjct: 392 KDLEHIFDRYY----KGNKSGTGLGLAIVKEILTLHGSKYGIESKEKIGTTFYFTL 443


>gi|312217907|emb|CBX97854.1| similar to two-component histidine kinase [Leptosphaeria maculans]
          Length = 1300

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 158/403 (39%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 566 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 625

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 626 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 681

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 682 TNAAMEGKFTQITVEASGEMDELKRKINQMVASLRESIQRNTAAREAAELANKTKSEFLA 741

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 742 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 798

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   L    +S+A++ +E  + +    + K+    + D  RL QI   
Sbjct: 799 ANRMVMEEIPFSMRGTLFNALKSLASRANERKLNLAYDVNHKVPDYVIGDSFRLRQIILN 858

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+ F+  G   V +  A+D         F F+V + G  I  D    +F+ F    
Sbjct: 859 LVGNAIKFTELGEVKVAISMAQDQECGPDQYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 918

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 919 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFYFT 961


>gi|312864534|ref|ZP_07724765.1| PAS domain S-box protein [Streptococcus downei F0415]
 gi|311099661|gb|EFQ57874.1| PAS domain S-box protein [Streptococcus downei F0415]
          Length = 453

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 138/382 (36%), Gaps = 34/382 (8%)

Query: 417 ENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR-SLWKTEENRL 474
            +L+  + L     +         + ++S+GV      G+I + N   R  L  T E  L
Sbjct: 77  NDLSDVLHLTHENLSQERNRLASVLSYMSDGVLATNRVGKITMINDTARKQLNLTREEAL 136

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               +I ++  +     ++ +  DL           R      + L  +  L        
Sbjct: 137 EM--NIMDLIDS-----DDYNYRDLITQTPEVTLYRRNEYDEFITLRVNFALNRRESGFI 189

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +                  A+        K +  +  FV  VS+ELR+PLT++  + + L
Sbjct: 190 SGLV---------------AVLHDTTEQEKEERERRLFVSTVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                G+LN + +  +++     +  ++ +++D+L L+ +D     +          +  
Sbjct: 235 NE---GALNEEVAPSFIQVSLDETNRMMRMISDLLQLSRIDNDTSHIEVEMTNFTAFITV 291

Query: 654 VKQSI----ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +        + +  + +  I             D  ++ Q+   IL+NA+ +S  G  + 
Sbjct: 292 ILNRFDQIKSQQDSDKDYEIVRNYPLNPIWVEIDTDKMTQVLDNILNNAIKYSPDGGQIT 351

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +         I S+ + G  IP+     +F+RF          + G GLGL+I +  I  
Sbjct: 352 VSMTTTETQLIISISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQ 411

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G +   S     +T    +P
Sbjct: 412 HQGFIWAKSEYGKGSTFTIVLP 433


>gi|258423145|ref|ZP_05686038.1| sensor protein srrB [Staphylococcus aureus A9635]
 gi|257846595|gb|EEV70616.1| sensor protein srrB [Staphylococcus aureus A9635]
          Length = 582

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 223 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 280

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 281 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 333

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 334 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 367

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 368 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 426

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 427 LSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 485

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 486 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 545

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 546 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 582


>gi|170078867|ref|YP_001735505.1| hybrid sensory kinase [Synechococcus sp. PCC 7002]
 gi|169886536|gb|ACB00250.1| hybrid sensory kinase [Synechococcus sp. PCC 7002]
          Length = 631

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 120/258 (46%), Gaps = 14/258 (5%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           L + Q     V    +++ +  L +  +A   A + K+ F+ ++S+E+R+PL  +IG   
Sbjct: 334 LAHQQRENLLVKYNQALKRQLNLIQAKQAAEMAAQEKSEFLANMSHEIRTPLNGVIGVAQ 393

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL T     L   Q++ V  I  S   LLN++NDILD   +++G ++L        +LL 
Sbjct: 394 LLLTM---DLKDDQAELVAIIEDSGKTLLNIINDILDFLRIESGSLRLEARCFSFQELLK 450

Query: 653 EVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            V   +  +  + +I ++  ++D      + D  RL QI   +L NA+ F++ GS  ++ 
Sbjct: 451 SVFTLLKVQADQKDIDLQYCVADSIPNILMGDDLRLRQILFNLLGNALKFTATGSVQLVI 510

Query: 712 AARD--------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIV 761
            +            +  F + + G  I       +F  F+        +  G GLGL+I 
Sbjct: 511 TSHTVPSLSDPPTEELSFQILDTGIGIQVAQLNQLFQPFIQADASISRRYGGSGLGLAIA 570

Query: 762 ESFINLHGGHVSISSSDE 779
           +  +NL GG + + S+ E
Sbjct: 571 KRLVNLMGGKIWVESNGE 588


>gi|262196436|ref|YP_003267645.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
 gi|262079783|gb|ACY15752.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
          Length = 1348

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/506 (16%), Positives = 192/506 (37%), Gaps = 34/506 (6%)

Query: 292  AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            A      + + +       +LH++ V +   D    ++    +    + +          
Sbjct: 732  AEHQKHIVEITEINNDLDNLLHSIEVGVVFLDAELRIRKFTSAIAAAFHLLPQ------- 784

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----N 407
                 +  R  +     + +     +I +V     T +      +G    + +      N
Sbjct: 785  -----DIGRQFDNFAHNIEYPALMRDITAVRAGETTIEREVVNRSGDFFFLRILPYRSDN 839

Query: 408  PRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLW 467
               G +    ++      E     L     + +   ++ +      GR+   N   + L+
Sbjct: 840  TITGVVLTLIDIDALKRSEANVRQL----SDIVTSSTDAITAADMQGRLTAWNEGAQQLY 895

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI-ITSFDDERKSLQGTLELLSDSVL 526
                +  + G H+  +     +  N S    +     I   +  R    G    +S S+ 
Sbjct: 896  GYTADE-ALGMHLNTMILPEYQSENRSFVERVSRGEQIADVETVRLRKDGHKVEISISLS 954

Query: 527  EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                +            +++   RAER +           E ++ F+  +S+ELR+PL  
Sbjct: 955  PLRDVHGDIVGVSSIARDISRRKRAERQVRRAI-------EQRDHFLATLSHELRNPLMG 1007

Query: 587  IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
            ++  T +L+   +    +   + ++ I   S  +  L++D+LD++ +    ++++ + I 
Sbjct: 1008 LLTATHILRDEDMQP--AAHRRALDLIERQSQQMARLLDDLLDVSRMRRDRIEMDKALID 1065

Query: 647  LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            +   +    ++++ +  +  + +      +     ADR RL Q+ + +L+NA+ ++  G 
Sbjct: 1066 MRKAVRPALEAVSGRAQDAGVTLAAEMPEEPVWVYADRTRLQQVAANLLANAIKYTPTGK 1125

Query: 707  TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
             + +     +   +  V++ G  I  ++ +S+F  F+ +    RG   G+GLGL++V S 
Sbjct: 1126 RIWVSIVPQDDVALLEVRDEGVGIATELQESIFEPFMQSEEPPRGWEGGMGLGLALVRSI 1185

Query: 765  INLHGGHVSISSSD-EGVTTINCRIP 789
               H G + +SS   +  +T   RIP
Sbjct: 1186 ALAHEGSLEVSSEGRDRGSTFTFRIP 1211



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 56/395 (14%), Positives = 119/395 (30%), Gaps = 36/395 (9%)

Query: 178  LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
             AE      +++   +    L  S++  V   D    I     +             +  
Sbjct: 731  NAEHQKHIVEITEINNDLDNLLHSIEVGVVFLDAELRIRKFTSAIAAAFHLLPQDIGRQF 790

Query: 238  GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA---ID 294
                   +     R I++    +   E       G+    +I+   +     G+    ID
Sbjct: 791  DNFAHNIEYPALMRDITAVRAGETTIEREVVNRSGDFFFLRILPYRSDNTITGVVLTLID 850

Query: 295  VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            +         +    +I+ + T AI   D    L   N    +L+           + DE
Sbjct: 851  IDALKRSEANVRQLSDIVTSSTDAITAADMQGRLTAWNEGAQQLYGY---------TADE 901

Query: 355  LLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--- 410
             L    +   LPE Q   +++ E + S  +     +      +G  + + ++ +P     
Sbjct: 902  ALGMHLNTMILPEYQSENRSFVERV-SRGEQIADVETVRLRKDGHKVEISISLSPLRDVH 960

Query: 411  ----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-------GVAVFGPDGRIKLS 459
                G   +  +++ +   E +    ++ +   +  LS        G+       R +  
Sbjct: 961  GDIVGVSSIARDISRRKRAERQVRRAIEQRDHFLATLSHELRNPLMGLLTATHILRDEDM 1020

Query: 460  NPAF-RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
             PA  R      E +      + +     SR   +    D       +  D RK+++  L
Sbjct: 1021 QPAAHRRALDLIERQSQQMARLLDDLLDVSRMRRDRIEMD------KALIDMRKAVRPAL 1074

Query: 519  ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            E +S    +  +  L             D  R ++
Sbjct: 1075 EAVSGRAQDAGVT-LAAEMPEEPVWVYADRTRLQQ 1108


>gi|148546933|ref|YP_001267035.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida F1]
 gi|148510991|gb|ABQ77851.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida F1]
          Length = 643

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+    L+++Q
Sbjct: 243 EQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETT---PLSNEQ 299

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y    S S+  LL ++NDILD + ++   ++L +    L +L+    QS      +  
Sbjct: 300 ADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDFNLGELITSSVQSFQHSAQQRG 359

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + + +      +      D  R+ QI   ++ NA+ F+ +G   V  +    +   I   
Sbjct: 360 LGLHLQLPAGIEQLQVNGDPTRIRQILLNLVGNALKFTERGQVQVDARWQVLDQQLIWLT 419

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV++ G  I  D  + +F  F         +  G GLGLSI  +     GG +   S +
Sbjct: 420 CSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAERMGGKLRGESRE 479

Query: 779 EGVTTINCRIPS 790
              +T    +P 
Sbjct: 480 GLGSTFTLEMPL 491


>gi|309800487|ref|ZP_07694641.1| sensor protein YycG [Streptococcus infantis SK1302]
 gi|308115882|gb|EFO53404.1| sensor protein YycG [Streptococcus infantis SK1302]
          Length = 449

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 139/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +      E   
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLHSILSYMTDGVLATNRRGQIIMINDMAKRQLGV-ERDD 133

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +   +I  +      Y       +L   I  S +    S     E +S  V  +++I   
Sbjct: 134 ALNQNILELLKIEEEY-------ELRDLITQSPELMIYSQNVNGEYISLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGIVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGAL--TEPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNETSHLDVELINFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   ++  E    +             D  ++ Q+   IL+NA+ +S  G  + + 
Sbjct: 293 LNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVS 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
               +   I S+ + G  IP+     +F+RF        R   G GLGL+I +  I  H 
Sbjct: 353 MKTTDDQMILSISDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|182414886|ref|YP_001819952.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842100|gb|ACB76352.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 689

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/506 (15%), Positives = 188/506 (37%), Gaps = 23/506 (4%)

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + ++     ++   +   +   + +  + ++N  + E   I  A   + PS     ++ 
Sbjct: 46  ALREREEGFRQLADAMPQLVWTANPDGRVDYYNARWREYAGISPATEGSEPS----WDWA 101

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR----GGTI-- 413
            + +   E      W+  I +        +    + +G+    +    PR    G  I  
Sbjct: 102 PTLHPDDEAATIHAWRRAIGTG--RPYQIEHRVRMADGRVRWHLSRGIPRRDATGRIIKW 159

Query: 414 -WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEE 471
                ++      + +     +         ++ +  +     +I  S     +L  T E
Sbjct: 160 YGTATDIHDFRVAQEEARLNEERYRLVAQATNDVIWDWDLRTNQIGWSEATLANLGYTAE 219

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYS 529
              +   + R       R   ++      A+   ++ DE   +   G+  +  D      
Sbjct: 220 QIGTSFENWRERVHPADRARLDASIQAAIASGGDTWSDEYRFRRQDGSYGVFLDRGHIAR 279

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                  + + + +++T+  R E  L +  +   +A   K+ F+  +S+ELR+PLT ++ 
Sbjct: 280 DKSGRAYRMIGSLLDLTERRRVEAELRQAKDDAERASRAKDEFLAALSHELRTPLTPVLM 339

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            T +L+  +  S   +    +  I  +  + + L++D+LDL  +  G +++N   + ++ 
Sbjct: 340 MTQMLEQER--SFPPEVRDDLRTIRRNVELEMRLIDDLLDLTRITRGKLRMNEEIVDVHR 397

Query: 650 LLNEVKQS-IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +L +  +        +  +R++   +    +   D  RL Q+F  ++ NA+ F+ +   +
Sbjct: 398 VLQDAIKIGCDDMCSQKRLRVRCEFEANRSAMRGDTARLGQVFWNLIKNAVKFTPEDGAI 457

Query: 709 ILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
            L+            V + G  I   +   +FN F         +  G+GLGL+I  + +
Sbjct: 458 TLRTRNPSPERLEVRVADTGIGIEASVLPQIFNAFEQGGAHITRRFGGLGLGLAICRALV 517

Query: 766 NLHGGHVSISSS-DEGVTTINCRIPS 790
            LH G +   S            +P+
Sbjct: 518 ELHHGTIVARSEGPGHGAEFIVELPT 543



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/444 (12%), Positives = 127/444 (28%), Gaps = 48/444 (10%)

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKK-----------LSNHISVFKVLFDSLDFLV 206
           R +G  +  R     G  S  A++     +           L      F+ L D++  LV
Sbjct: 8   RPTGDQSGDR--HDAGERSSPAQSDQPQDREGVTPGELASALREREEGFRQLADAMPQLV 65

Query: 207 WHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM-----ISSSALEKN 261
           W  +  G + + N  +++                         +         +    + 
Sbjct: 66  WTANPDGRVDYYNARWREYAGISPATEGSEPSWDWAPTLHPDDEAATIHAWRRAIGTGRP 125

Query: 262 FC-ETVSTLEHGNNKSYKIVRVLNSFG------EAGIAIDVSKEITVNDQLTHTYEILHN 314
           +  E    +  G  + +    +             G A D+       ++     E    
Sbjct: 126 YQIEHRVRMADGRVRWHLSRGIPRRDATGRIIKWYGTATDIHDFRVAQEEARLNEERYRL 185

Query: 315 LTVAI--AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWK 372
           +  A    I+D +        S   L  +         S +   E +  A++     + +
Sbjct: 186 VAQATNDVIWDWDLRTNQIGWSEATLANLGYTAEQIGTSFENWRERVHPADRARLDASIQ 245

Query: 373 TWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN---PRGGTIW----MFENLTVQVDL 425
               +    +    + +  +   +G     +   +    + G  +       +LT +  +
Sbjct: 246 AAIASGGDTW----SDEYRFRRQDGSYGVFLDRGHIARDKSGRAYRMIGSLLDLTERRRV 301

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +                E +A    + R  L+      + +  E   S    +R+   
Sbjct: 302 EAELRQAKDDAERASRAKDEFLAALSHELRTPLT--PVLMMTQMLEQERSFPPEVRDDLR 359

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
           T  R        +L   +I    D  +  +G L  +++ +++   + L +A  +      
Sbjct: 360 TIRR------NVELEMRLIDDLLDLTRITRGKL-RMNEEIVDVHRV-LQDAIKIGCDDMC 411

Query: 546 TDSVRAERALTEKNEALRKADEIK 569
           +      R   E N +  + D  +
Sbjct: 412 SQKRLRVRCEFEANRSAMRGDTAR 435


>gi|322834644|ref|YP_004214671.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
 gi|321169845|gb|ADW75544.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
          Length = 779

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 149/380 (39%), Gaps = 22/380 (5%)

Query: 419 LTVQVDLETKYNTLVKV--------QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           +  ++ LE ++    ++            +D   + V     D      N A   L    
Sbjct: 132 VVDKLKLEMQHREQAQIELSQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLTGKS 191

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E +L   T         +    E+D       +  +++       G       +  E   
Sbjct: 192 EKQLIGLTPNDVYTPDIAEKVVETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRK 246

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +P  +       +        ER      +AL  A   K +F+  +S+ELR+PL  I+G 
Sbjct: 247 VPFYDRIGKRHGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGL 304

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + +L  ++   L+ +Q  Y++ I  S+  L N+ NDI+++  ++   ++L+   +   + 
Sbjct: 305 SRILLDTE---LDKEQHSYLKTIHVSAITLGNIFNDIIEMDKIERRKVQLDNQPVDFTEF 361

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L++++           ++  +  D  L  S   D  RL QI   ++ NA+ F+ +G  V+
Sbjct: 362 LSDLENLSGLLAQPKGLKFIMEPDLPLPRSITTDGTRLRQILWNLIGNAVKFTREGEIVL 421

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFIN 766
                 N    F V+++G  IP+D    +F  +     +   +   G G+GL++ +    
Sbjct: 422 SVHYEPNDMLRFVVRDSGLGIPQDEQDKIFAMYYQVKDQNGGKPATGTGIGLAVSKRLAQ 481

Query: 767 LHGGHVSISSSDEGVTTINC 786
             GG +++SS     +    
Sbjct: 482 AMGGDITVSSVPGQGSCFTL 501



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 81/205 (39%), Gaps = 25/205 (12%)

Query: 121 FHHYIKLSKATEKLRK-EGQSFDLVAETQNDCAI---KIEGRVSGSCAFLRILSLDGIYS 176
                +L++  +KL +   +  +L  + +++      +I  RV    A  R+  +D +  
Sbjct: 81  EESRQRLARLVDKLEEMRHRDLELNQQLKDNITQLNQEIADRVKAEEA--RLAVVDKLKL 138

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           E+        +LS   ++ +   D+   LV++R++  +    N + +  T   G   ++ 
Sbjct: 139 EMQHREQAQIELSQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLT---GKSEKQL 195

Query: 237 IG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIVRVL----- 283
           IG     ++  +I ++++ +   EK F   VS           G    +++ +V      
Sbjct: 196 IGLTPNDVYTPDIAEKVVETD--EKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRI 253

Query: 284 -NSFGEAGIAIDVSKEITVNDQLTH 307
               G  G   D+++     D L +
Sbjct: 254 GKRHGLMGFGRDITERKRYQDALEN 278


>gi|294627017|ref|ZP_06705607.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598679|gb|EFF42826.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 290

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 42  ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 101

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S+  L  +V+D+LDLA ++AG + ++     L DL   ++          +  +    
Sbjct: 102 SGSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDVGSTTLIFED 161

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP +
Sbjct: 162 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAE 221

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 222 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINSVVGQGSEFYVVLP 279


>gi|192289852|ref|YP_001990457.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192283601|gb|ACE99981.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 1122

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + +  L    EA   A+  K+ +V  +S+ELRSPL  I G+  LL+ 
Sbjct: 641 QTQLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +L  +    +  +  S+  L  L++ +LD++ ++AG + L+   +   + L+++  
Sbjct: 701 D--NTLPPRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDEVRFGEFLDQLVG 758

Query: 657 SIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +    +I               AD +RL Q+   +LSNA+ F+ +GS V       
Sbjct: 759 MFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNAIKFTQEGS-VHFIVHYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
           N      V++ G  I  D  + +F  F   A        G GLGL+I +    + GG ++
Sbjct: 818 NPVAELEVRDTGPGIHTDDLERIFAPFERGALGAAQPHSGTGLGLTISKLLAGVMGGDLT 877

Query: 774 ISSSDEGVTTINCRI 788
           ++S+ +  +T   ++
Sbjct: 878 VTSTPDKGSTFRVKL 892


>gi|107101405|ref|ZP_01365323.1| hypothetical protein PaerPA_01002443 [Pseudomonas aeruginosa PACS2]
          Length = 868

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 122/726 (16%), Positives = 247/726 (34%), Gaps = 83/726 (11%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG-----RVSGSCAFLRILSLDGIYSELA 179
           + L +   KL++  Q+     E+    + +  G      V       R  +L     EL 
Sbjct: 17  VALEEERHKLQRINQALIGRIESSAAQSDEAYGAFQYSVVLAEQVRERTDALSQTMLELK 76

Query: 180 E----TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
                 +    +            +S+       D    I+  N  ++       I  + 
Sbjct: 77  ASNQLLSDARLRAETAHQHLLDAIESISDAFVLFDPQQRIVLFNERFR----ALWIDSRA 132

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAID 294
            IG   +  +     R       E+   +  +     + +  ++  R     G A +  D
Sbjct: 133 RIGPGMRRAELHRLARSGGLIVEEQRGGDQQTLYRLRDERWLRMSERPTRDGGLAVLYSD 192

Query: 295 VSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           V++         E  +  +       + NL+  +A+   +  L+  NR F+EL  +  A 
Sbjct: 193 VTEIKLSETARREQALAQKSHLLQRAVDNLSQGVAMVGADGVLELWNRRFLELCGL--AP 250

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +A + +  E++         P   +            + S        L +G+ L +   
Sbjct: 251 IAGHRAFAEVMAESELPLLTPRSQD-----------SQGSPLSAREQRLFDGRVLEIRTH 299

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P GG +  F ++T +           +      D +   +A    +   + +N  +  
Sbjct: 300 ALPTGGFVNTFTDITERYRHAEALRASERWIRLITDQVPALIAYLSDELVYEFTNKVYEE 359

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            ++     +  G  +R++         E       A    +F+    +L G    +  S 
Sbjct: 360 WYRWPSGSML-GRCLRDVHGAEHCRRLEPYFERALAGESVTFEIAETALSGEERYMQRSY 418

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------------- 565
           +         A   +   ++T+  R   AL +  + L +                     
Sbjct: 419 VPNRQADGRVAGLFVLIRDITERRRTAEALHQAYQNLEQRVRERTAELTTLNDQFKREIH 478

Query: 566 -------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                              +  K  F+  VS++L  PL     FT  L+     + +++ 
Sbjct: 479 ERSQVEARLREAKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALQERGSAARDNEA 538

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  IS S   + NL+  ++D++ +DAG++  + +   L +LL  +            
Sbjct: 539 --LVNNISHSLEDVENLLGTLVDISKLDAGVITPDIAPFELGELLGNLAAEYRQVAASEG 596

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+  ++ G L    +D+Q L +I   +LSNA+ ++ +G  V+L   R        V + 
Sbjct: 597 LRLDFVACGAL--VRSDQQLLARILRNLLSNAIRYTPRG-RVLLGCRRHRQRLSIEVWDT 653

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F     +   Q RG+GLGL+IV+    + G  V + S     +  
Sbjct: 654 GVGIAADKLGEIFQEFKRGESQRCHQDRGLGLGLAIVDKIARMLGHRVRVGSLPGKGSCF 713

Query: 785 NCRIPS 790
           +  +P 
Sbjct: 714 SIEVPL 719


>gi|223940097|ref|ZP_03631960.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223891199|gb|EEF57697.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 636

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 105/642 (16%), Positives = 227/642 (35%), Gaps = 58/642 (9%)

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
               ++   + DS +  +  ++  G I   N   +      G   Q+AIG+   +     
Sbjct: 6   EQSRALLAAIVDSSEDAIITKNLDGIITSWNQGAE---GIFGYTPQEAIGQPVTMLIPPD 62

Query: 249 KKRMIS------SSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFGEAGIAIDVS 296
           +                    +TV   ++G   +  +             G + IA D+S
Sbjct: 63  RMEEEPVILERIKRGERIKHYQTVRRAKNGALLNISLTVSPLINSEGRIIGASKIARDIS 122

Query: 297 KEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            E+   +++  + E     L ++  A+   D+N  + F N     L   D       P +
Sbjct: 123 HEVNTQERVRQSEEQFRVTLSSIGDAVIATDRNGRITFMNSVAETLTGWDTPQAIGIPLD 182

Query: 353 DELL---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
           +      EF R   + P     +  K    + +    +   T    +     +  ++   
Sbjct: 183 NAFKIVNEFTRQPAENPVNKVIQEGKVVGLANHTILISKDGTERPIDDSGAPIRGSAADL 242

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
            G + +F ++T + + E     L       + +  + +     DG I   N   + ++  
Sbjct: 243 RGVVLVFRDVTERREAEVAALRL----AAIVQNSDDAIISKNLDGIITSWNEGAQRIFGY 298

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             N +   +    +        +E  G       +  F+  R + +G    +S   L  S
Sbjct: 299 SANEIIGKSIKTLVPPELQEQEDEILGRLRRGERVFHFETIRVAKEGRHIPIS---LTIS 355

Query: 530 IIPLPNAQTM---LTFVNVTDSVRAERALTEKNEALRKA---------DEIKN------- 570
            I  P+   +       ++T+  +AE+AL E  E L+           +  ++       
Sbjct: 356 PIKDPSGHIIGASKIARDITERKQAEKALAEAKEKLQSYANELELQVRERTRSLEKTITE 415

Query: 571 --SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
             SF   +S+++R+PL  I  F++++      ++ +     ++    ++  +  L+ D+L
Sbjct: 416 LESFSYSLSHDMRAPLRAIESFSEIVLKDYGETIGAPGVDLLKRTITAAHRMDKLILDLL 475

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            L  +      +N   I L  L++ +   I  ++     + ++     L     +   L 
Sbjct: 476 TLTRL--SQAPINLEPIDLEKLIDGI---IQGRLEFQPPQAEIKIQKPLFRVTGNEVSLT 530

Query: 689 QIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           Q  + +L NA+ F   G+   V + +  +       +++NG  I  +  K +F  F    
Sbjct: 531 QCLTNLLDNAVKFVPTGTVPHVRIHSEPNGDGVRLWIEDNGIGINANEKKQLFQMFQRI- 589

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           H     G G+GL+IV   +   GG   + S     +    ++
Sbjct: 590 HSDTYPGTGIGLAIVRKAVERMGGEAGVESEPGKGSQFWLQL 631



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 99/332 (29%), Gaps = 31/332 (9%)

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
           K  + +R+      L         I  EGR+ G+    R +S +    E         ++
Sbjct: 81  KHYQTVRRAKNGALLNISLTVSPLINSEGRIIGASKIARDISHEVNTQE---------RV 131

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ--------KAIGES 240
                 F+V   S+   V   D+ G I + N   +  T  +             K + E 
Sbjct: 132 RQSEEQFRVTLSSIGDAVIATDRNGRITFMNSVAETLTGWDTPQAIGIPLDNAFKIVNEF 191

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSF------GEAGIAID 294
            +   E    ++I    +      T+   + G  +                 G   +  D
Sbjct: 192 TRQPAENPVNKVIQEGKVVGLANHTILISKDGTERPIDDSGAPIRGSAADLRGVVLVFRD 251

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
           V++             I+ N   AI   + +  +   N     ++      +        
Sbjct: 252 VTERREAEVAALRLAAIVQNSDDAIISKNLDGIITSWNEGAQRIFGYSANEIIGKSIKTL 311

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           +   L+      +++  +  +      +++    K+  H+P   T+  I   +P G  I 
Sbjct: 312 VPPELQEQ---EDEILGRLRRGERVFHFETIRVAKEGRHIPISLTISPI--KDPSGHIIG 366

Query: 415 ---MFENLTVQVDLETKYNTLVKVQGETIDHL 443
              +  ++T +   E       +      + L
Sbjct: 367 ASKIARDITERKQAEKALAEAKEKLQSYANEL 398


>gi|260428952|ref|ZP_05782929.1| sensory box sensor histidine kinase/response regulator [Citreicella
           sp. SE45]
 gi|260419575|gb|EEX12828.1| sensory box sensor histidine kinase/response regulator [Citreicella
           sp. SE45]
          Length = 783

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 154/401 (38%), Gaps = 21/401 (5%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID-HLSEGVAVFGPDGRIKLS 459
                       + + +    + + + + +     Q   +  H ++   +     RI   
Sbjct: 201 RAERRRTEDSRRLLVGQEALERANSDLRESQAEARQLALVARHANDSFMLLDNALRIIWV 260

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N  F  +     + +   T +  +A   S     ++     +    + +  R  +    +
Sbjct: 261 NEGFTRMKGFHADEVMGRTPVEVLAGPDSDLEALTE----ISRSALAGEPLRIEILNYTK 316

Query: 520 LLSDSVLEYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                 +E    P+ +A     + ++T  ++TD+      L +  E        K +F+ 
Sbjct: 317 DGRQIWVEAVFAPMLDASGTVEKVIVTERDITDARLRAIELADAKERAESGARAKAAFLA 376

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+E+R+P+  IIG  DLL     G+L+  Q  YV  I  S+  LL ++NDILD + ++
Sbjct: 377 TMSHEIRTPMNGIIGMADLLSD---GALSEDQQLYVATIRTSAEALLKIINDILDYSKLE 433

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A    +      L   + +    +  +  E  + + +  +  L  S + D  RL QI   
Sbjct: 434 ADKFAIVAEPFSLAACIRDAAGILRPQALEKGLFLDICHERPLPDSVLGDSGRLRQILIN 493

Query: 694 ILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +L NA+ F++ G  V L    +  D       +V+++G  +  D  + +F++F       
Sbjct: 494 LLGNAVKFTATGG-VTLTTRVEGDDAGVALTVTVQDSGIGVAPDRAERIFDQFEQADAET 552

Query: 750 QRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RR  G GLGL+I        GG + +             +
Sbjct: 553 TRRFGGTGLGLAISRELAVRMGGGLRLVEGRGSGACFELTL 593


>gi|229096517|ref|ZP_04227488.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29]
 gi|228686723|gb|EEL40630.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29]
          Length = 392

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 5/244 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +L   ++ + KA+++KN F+  +S+E+R+PLT I G+++ LK +       + 
Sbjct: 154 ELGELAHSLNYMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVEHLTEEEI 212

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q +  IS  +  L++LV ++LD + + +    L    + L D+L E    +     +  
Sbjct: 213 KQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKKQ 272

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I+     +      + DR RL QIF  I+ NA+ +S +  TV ++A ++ G  +  VK+ 
Sbjct: 273 IQFINTIER--IELLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVIKVKDE 330

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++    +   F    +     G GLGL+IV+  + LH G +SI S +   TTI  
Sbjct: 331 GIGIAKEHLPYIEQSFYQINNHAA--GAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILI 388

Query: 787 RIPS 790
           ++P 
Sbjct: 389 KLPL 392


>gi|255936779|ref|XP_002559416.1| Pc13g09940 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584036|emb|CAP92063.1| Pc13g09940 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1879

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 17/305 (5%)

Query: 496  GWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQTMLTFVNVTDSVRAER 553
              D    +  S +   +S  G        V+    S      A    T  ++ D    ER
Sbjct: 1106 QQDENGRVFYSTEIRLRSRGGDFRWHLVRVVRVKTSSFGSEEASWYGTCTDINDRKNLER 1165

Query: 554  ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
             L +  + L    E K  F  ++S+E+R+PL  I+G    +  ++   L+S Q + ++ I
Sbjct: 1166 ELNKAMQQLNHQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQ---LDSDQRRMLDTI 1222

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              SST L  LV++ILD++ V+AG M +  S   +  ++ +V  +IA++  +  + I  + 
Sbjct: 1223 QNSSTNLRELVDNILDVSRVEAGKMSMVKSWFHIRSMIEDVIDTIASRAIDKGLEINYLI 1282

Query: 674  DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL-------KAARDNGDFI--FSV 723
               L    + DR R+ Q+   +L NA+ F+++G   I         A  D+      F V
Sbjct: 1283 GEDLPSMVIGDRFRIRQVLINLLGNAVKFTAQGEIHICCDMYRDPSANPDDTQAFMNFEV 1342

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G        + +  RF      G ++  G GLGL + +  + +HGG ++ SS +   
Sbjct: 1343 VDTGKGFSSQDAERLMQRFSQLGENGTQQHAGSGLGLFLSKQLVEMHGGKLTPSSKEGQG 1402

Query: 782  TTINC 786
               + 
Sbjct: 1403 AKFSF 1407


>gi|145606054|ref|XP_370199.2| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15]
 gi|145013787|gb|EDJ98428.1| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15]
          Length = 2514

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 118/241 (48%), Gaps = 18/241 (7%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              +A + K+ F+ +VS+ELR+PL  +IG ++LL+ S     N +Q +  + I  S+ +LL
Sbjct: 1907 AEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSLS---NKEQLEMADSIRVSADLLL 1963

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN----NIRIKVISDGKL 677
             ++NDILD + ++A  MKL        +++ EV ++++    E     N++I    +   
Sbjct: 1964 TVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNQEKTRRNNVQIIKEINLPQ 2023

Query: 678  GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPE 732
                 D  RL Q+   ++ N++ F+ +GS + + A       D+    F VK+ G  IP 
Sbjct: 2024 LLIYGDPIRLHQVLGNLIGNSLKFTDRGS-ITIGARVDSETEDSATLSFWVKDTGIGIPP 2082

Query: 733  DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFIN-LHGGHVSISSSDEGVTT--INCR 787
                 +F  F         +  G GLGLSI +S +  +  G +++ S+D   TT     +
Sbjct: 2083 AQLAKLFQPFSQADPSTARKYGGSGLGLSICKSLVETMMKGKITLDSADGVGTTAMFTVK 2142

Query: 788  I 788
             
Sbjct: 2143 F 2143


>gi|91978328|ref|YP_570987.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91684784|gb|ABE41086.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 1122

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + +  L    E    A+  K+ +V  +S+ELRSPL  I G+  LL+ 
Sbjct: 641 QTTLLMQEIDAHRQTDAELQRAKEVAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               SL  +    +  +  S+  L  L++ +LD++ ++AG + L+   + L + L+++  
Sbjct: 701 D--SSLPPRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDEVRLGEFLDQLVG 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +    ++         L   V AD +RL Q+   +LSNA+ F+  GS V       
Sbjct: 759 MFRLQAAAKDVEFVFKRPQYLPPVVYADEKRLRQVLINLLSNAIKFTQSGS-VHFIVHYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
           N      V++ G  I  D  + +F  F   A        G GLGL+I +    + GG +S
Sbjct: 818 NPVAELEVRDTGPGIHADDLERIFAPFERGALGVSQPHTGTGLGLTISKLLAGVMGGDLS 877

Query: 774 ISSSDEGVTTINCRI 788
           ++S+    +T   ++
Sbjct: 878 VTSALGQGSTFRVKL 892


>gi|329907837|ref|ZP_08274716.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546908|gb|EGF31823.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 375

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 10/218 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+P+  IIG TDL   ++   L+ +Q +Y+  +  SS  LL ++NDILD + +++
Sbjct: 1   MSHEIRTPMNGIIGMTDLALDTR---LDGEQREYLTLVKTSSAALLTIINDILDFSKIES 57

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKI 694
           G ++L +    L  LL  + + +A +  E  + + V       G  + D  RL Q+ + +
Sbjct: 58  GKLELEHIEFDLPALLGSIVKLLALRSTEKGLHLSVDVGHDVPGMLLGDPGRLRQVLTNL 117

Query: 695 LSNAMDFSSKGST---VILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           + NA+ F+++G     V L AA       +F+V + G  I  D   S+F  F        
Sbjct: 118 IGNAIKFTAQGEITVQVTLDAASAGTVRLVFAVSDQGIGIAADKQASIFEAFTQADTSTT 177

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           R   G GLGL+I    +    G + +SS +   +    
Sbjct: 178 RQYGGTGLGLAISSQLVAAMDGTLGVSSVEGRGSVFTF 215


>gi|257419429|ref|ZP_05596423.1| predicted protein [Enterococcus faecalis T11]
 gi|257161257|gb|EEU91217.1| predicted protein [Enterococcus faecalis T11]
          Length = 576

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +    +  
Sbjct: 215 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSD-- 272

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                  +NI +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 273 -------KNIQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 315

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 316 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 375

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 376 LIDGAKED-PEVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 433

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 434 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 492

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 493 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 552

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 553 IAIDSHLGLGTTFTITLPL 571


>gi|148267975|ref|YP_001246918.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394040|ref|YP_001316715.1| histidine kinase [Staphylococcus aureus subsp. aureus JH1]
 gi|253314859|ref|ZP_04838072.1| histidine kinase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006277|ref|ZP_05144878.2| histidine kinase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793568|ref|ZP_05642547.1| sensor protein srrB [Staphylococcus aureus A9781]
 gi|258407190|ref|ZP_05680338.1| sensor protein srrB [Staphylococcus aureus A9763]
 gi|258420274|ref|ZP_05683222.1| sensor protein srrB [Staphylococcus aureus A9719]
 gi|258437322|ref|ZP_05689306.1| sensor protein srrB [Staphylococcus aureus A9299]
 gi|258443527|ref|ZP_05691866.1| sensor protein srrB [Staphylococcus aureus A8115]
 gi|258446734|ref|ZP_05694888.1| sensor protein srrB [Staphylococcus aureus A6300]
 gi|258448649|ref|ZP_05696761.1| sensor protein srrB [Staphylococcus aureus A6224]
 gi|258454265|ref|ZP_05702235.1| sensor protein srrB [Staphylococcus aureus A5937]
 gi|269203118|ref|YP_003282387.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892990|ref|ZP_06301224.1| sensor protein srrB [Staphylococcus aureus A8117]
 gi|282928961|ref|ZP_06336548.1| sensor protein srrB [Staphylococcus aureus A10102]
 gi|295406611|ref|ZP_06816416.1| sensor protein srrB [Staphylococcus aureus A8819]
 gi|296276359|ref|ZP_06858866.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297245805|ref|ZP_06929670.1| sensor protein srrB [Staphylococcus aureus A8796]
 gi|76363426|sp|Q99TZ9|SRRB_STAAM RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363427|sp|Q7A5H7|SRRB_STAAN RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|147741044|gb|ABQ49342.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946492|gb|ABR52428.1| Histidine kinase [Staphylococcus aureus subsp. aureus JH1]
 gi|257787540|gb|EEV25880.1| sensor protein srrB [Staphylococcus aureus A9781]
 gi|257841217|gb|EEV65663.1| sensor protein srrB [Staphylococcus aureus A9763]
 gi|257843737|gb|EEV68138.1| sensor protein srrB [Staphylococcus aureus A9719]
 gi|257848527|gb|EEV72515.1| sensor protein srrB [Staphylococcus aureus A9299]
 gi|257850933|gb|EEV74876.1| sensor protein srrB [Staphylococcus aureus A8115]
 gi|257854309|gb|EEV77258.1| sensor protein srrB [Staphylococcus aureus A6300]
 gi|257857927|gb|EEV80816.1| sensor protein srrB [Staphylococcus aureus A6224]
 gi|257863544|gb|EEV86302.1| sensor protein srrB [Staphylococcus aureus A5937]
 gi|262075408|gb|ACY11381.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589368|gb|EFB94459.1| sensor protein srrB [Staphylococcus aureus A10102]
 gi|282764308|gb|EFC04434.1| sensor protein srrB [Staphylococcus aureus A8117]
 gi|294968358|gb|EFG44382.1| sensor protein srrB [Staphylococcus aureus A8819]
 gi|297177456|gb|EFH36708.1| sensor protein srrB [Staphylococcus aureus A8796]
          Length = 583

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAVVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 428 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 583


>gi|315172457|gb|EFU16474.1| PAS domain S-box [Enterococcus faecalis TX1346]
          Length = 591

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PEVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 449 ILSSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|194292840|ref|YP_002008747.1| sensor hybrid histidine kinase with pas domain [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226744|emb|CAQ72695.1| Putative sensor hybrid histidine kinase with PAS domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 662

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/504 (18%), Positives = 182/504 (36%), Gaps = 43/504 (8%)

Query: 306 THTYEILHNLTV-AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
                +L  +   A+   D +  +         L+    A +A +           S   
Sbjct: 32  QRYRRLLDAVQDCAVFELDAHGAIVAWPEPARRLFGYSAAEIAGSHV---------SRLH 82

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLH-------VIVTSNPRG----GT 412
            PE +     +  + +  ++ +   + W    +G  L        +     P G    G 
Sbjct: 83  RPEDVAAGVPQHWLETAARNGQARDEGWRVRRDGSLLRASCEMRRIDAADLPDGAPGAGF 142

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLS-EGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           I    + TVQ                  ++L    V     DG I+  N   R L     
Sbjct: 143 IVSCRDTTVQQAAADHARLADDKLRLLAENLPCTAVCELDLDGTIRSWNAGARVLAGHTA 202

Query: 472 N-----RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
                  L+     +++AA   R   E+      A    + ++      G++   +  ++
Sbjct: 203 QEAAGQPLAWLYTPQDVAAGRPRAALEAAR----ACGQWTGEERLARKDGSVVRCATRMV 258

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
                       + T  +++D++R E         L   +    SF+  +++ELR+PL  
Sbjct: 259 LVRDAAGCPEGLLWTARDLSDALRLE--------TLDAGNRRLQSFLAILAHELRNPLAP 310

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           +    + +          +  +  E I      +  LVND+LD+  V AG MK+  +   
Sbjct: 311 VRNALEAIV--LAADTGPRVRRCAEIIDRQLRQIERLVNDLLDVGRVTAGKMKMELTPTS 368

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
            ND+++   ++I   +     ++ V          AD  RL Q+   +LSNA  ++ +G 
Sbjct: 369 YNDVVSTCLEAIRPTLEAAGQQLVVALPEVTPYVRADAARLGQVLLNLLSNAAKYTPRGG 428

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
           TV ++ + +    I +V + G  +       +FN F      G R G+G+GL++ ++ + 
Sbjct: 429 TVSVRVSVEPARVITAVSDTGRGLEPSALDRIFNLFAQEGDAGSRSGLGVGLALAKAIVE 488

Query: 767 LHGGHVSISSSD-EGVTTINCRIP 789
            HGG +   S+     +T    +P
Sbjct: 489 AHGGAIQADSAGVGKGSTFTVILP 512


>gi|154246369|ref|YP_001417327.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154160454|gb|ABS67670.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 945

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 3/243 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L+  N  LR  DE+K+ FV  V++ELR+PLT I   ++L+  +      +++ +++
Sbjct: 672 ASAELSAANAQLRTLDELKDDFVSSVTHELRTPLTAIRALSELMLDAP-DMEEAQRQEFL 730

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I   S  L  LVN +LD+A +++G  + + + + L  L+ +   +           I 
Sbjct: 731 AIIVGESERLGRLVNQVLDMAKLESGHGEWHNADVDLRRLVRDAVTATTELARSRGAEIV 790

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSS 729
             +   +    AD  RL Q+   ++SNA+ F   +G  V +    +    +  VK+NG  
Sbjct: 791 FEAPETVPLLRADPDRLTQVVLNLISNAVKFVPAEGGRVHVSLHVEGDGLVVRVKDNGPG 850

Query: 730 IPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +PE    ++F +F        R  G GLGL I    ++  GG + + + D        R+
Sbjct: 851 VPEAERDTIFEKFRQGGDALTRPPGTGLGLPISRRIVDHFGGRMWLENQDGSGACFAFRL 910

Query: 789 PSK 791
           P +
Sbjct: 911 PFQ 913


>gi|260170735|ref|ZP_05757147.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315919071|ref|ZP_07915311.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313692946|gb|EFS29781.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 642

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 5/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q
Sbjct: 397 ELLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     ++
Sbjct: 455 QSYYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSD 514

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKN 725
            +    +  +    V D QR+ Q+   +LSNA  F+ +G   +      +    IFSV +
Sbjct: 515 NQFLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTD 574

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP++    VF RF       Q  G GLGLSI +  ++   G + I     G     
Sbjct: 575 TGCGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWRGSIWIDPDYTGGARFV 632

Query: 786 CRIPS 790
              P 
Sbjct: 633 FSHPL 637


>gi|304399231|ref|ZP_07381098.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304353285|gb|EFM17665.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 909

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 16/244 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DLLKTSKLGSLNSKQSQYVEY 612
            L    +  ++A  IK+ F+ ++S+ELR+PL  ++GFT  +LKT     L + Q  Y++ 
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQ----LRTTQRDYMQT 333

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL+++ND+LD + ++AG + L      L   L+E    +A   H+  + + V+
Sbjct: 334 IERSANNLLSIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVV 393

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG------STVILKAARDNGDFIFSVKN 725
            D  +  + + D  RL QI   ++ NA+ F+ KG         ++  +R   +    V++
Sbjct: 394 CDSSVPDNVIGDALRLQQILINLIGNAIKFTEKGYIGLRVGQRVITQSRV--ELEIQVED 451

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +G  I E     +F  F        RR  G GLGL I +  +   GG ++ SS  +  + 
Sbjct: 452 SGIGISEQQQTQMFQAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSV 511

Query: 784 INCR 787
              R
Sbjct: 512 FVIR 515


>gi|257870290|ref|ZP_05649943.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257804454|gb|EEV33276.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 580

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 163/426 (38%), Gaps = 35/426 (8%)

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKY 429
           +   ++    V       K     P+ Q + +  T             L+ Q+      Y
Sbjct: 177 FHALRQRNRPVQTILPVLKKMISSPDQQAIIMQETPEHDD-LYQTINQLSEQMSRTYQAY 235

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
               +     ++ L  GV +   D R+ L NP  +                        +
Sbjct: 236 AASEQQLYGLLNELMIGVFIIDQDDRLLLLNPTMQEQLGI------------EALPQLPQ 283

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVTD 547
            + E         +I   +++  SLQ  + L  D   VL+ ++      + +    ++T 
Sbjct: 284 PFTEVIHDTQLIQLIYHMNEQTPSLQEEIALSDDHPRVLDVTLRLFNENELLGISYDLTR 343

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + E+              ++  FV +VS+EL++P+T++IGFT+ L    L        
Sbjct: 344 VRQLEK--------------MQKDFVGNVSHELKTPVTSLIGFTETLLDGALED-RETLV 388

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +++ I   +  L NL+ +I+ L+  D+         I L  L+ ++ +S      E  +
Sbjct: 389 SFLKIIQKDAYRLENLIQEIILLSK-DSHSFDYTAQEINLRALIEQIIRSYEPIAREKQL 447

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
              +    +L  F++ R+ L  I   ++ NA+++S    T+ +  +        SV++ G
Sbjct: 448 SFIINGPEELI-FISKRELLQPILKNLIENAVNYSKSQGTIQVDYSYRAKQLQLSVRDQG 506

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +    +F RF        R   G GLGL+IV+ +  L GG +++ S     +T  
Sbjct: 507 IGIDREDQVRIFERFYRVDKARTRNSGGTGLGLAIVKDYTKLLGGTITVDSFPGAGSTFT 566

Query: 786 CRIPSK 791
             +P +
Sbjct: 567 ITLPLE 572


>gi|158321811|ref|YP_001514318.1| integral membrane sensor hybrid histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158142010|gb|ABW20322.1| integral membrane sensor hybrid histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 1035

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 3/232 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E   + D +K+ F+   S+ELR+PL  I+     L   K G+LN++Q + + +I      
Sbjct: 430 EKQIRYDRLKDEFLAKASHELRTPLHVILNLAKNLLEGKKGTLNARQQEELFFIHREGQR 489

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLG 678
           L  LV D+LD + +  G ++L   ++    ++ ++ + +   + EN +I +K        
Sbjct: 490 LTRLVEDLLDASQIKKGEIRLRLQSVEPYKIVEDILKEMKILIPENSSILLKNKIPSTFP 549

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           +  AD  +  QI   ++ NA+ ++  G  +++ A+        +V + G  I ++  K V
Sbjct: 550 AMRADSDKFRQIIYNLVHNAIKYTKDGE-IVVSASAAAEQIEITVSDTGIGIEKESLKEV 608

Query: 739 FNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F  F      GQ   G+GLGLSIV+  +   GG + + S     +     +P
Sbjct: 609 FEIFYQRNGEGQAEQGLGLGLSIVKHLVESQGGTIEVESVYGKGSCFRFTLP 660



 Score = 57.6 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 42/236 (17%)

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA- 635
            S EL+S + ++     LL    +     K+ QY  +   S   L N +N I+ L+ +D+ 
Sbjct: 809  SEELKSRIQSL-----LLMKKSVEEDLEKEFQYF-FSQISPHFLYNTINTIIGLSYMDSE 862

Query: 636  --------------GIMKLNYST--IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
                          G + ++     I L   L  +   +  +    + R+ +  D +   
Sbjct: 863  KVRDALNNLSIYFRGKLDVHRKNGLISLKSELELITAYLQIEKMRFDERLILEFDLEEDL 922

Query: 680  FVADRQRLLQIFSKILSNAMDFS--SKGSTVILKA---ARDNGDFIFSVKNNGSSIPEDM 734
                    LQ    I+ N++  S  +K  TV ++      + G     +++NG  +  + 
Sbjct: 923  KAMIPPLTLQ---PIVENSVHHSISAKNDTVTIRITAKREEKGFIRIGIEDNGIGMTLEK 979

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG-HVSISSSDEGVTTINCRIP 789
             K +           QR    +GLS V   I    G  + + S     T +   IP
Sbjct: 980  QKEL------LGGNSQR----IGLSNVMEKIKRLKGATLVLDSKPGAGTKVEITIP 1025


>gi|323706234|ref|ZP_08117801.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534398|gb|EGB24182.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 473

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 3/250 (1%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +  +     ++    +  L + D  +  FV +VS+ELRSPL+ I G+ D +    + +  
Sbjct: 223 DDDEIGDLAKSFNIMSSELGRMDNARKEFVANVSHELRSPLSTIQGYIDGVVDGTIPA-- 280

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            K   Y+E     +  +  L++++LD+  +++G   LN S   +N+L+      +  ++ 
Sbjct: 281 EKSKFYLEIAQKETRRMSRLISELLDITKMESGAFPLNISEFDINELIRLTIIKMEARIS 340

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
           + ++ +KV  +       AD+ ++ Q+ + ++ NA+ FS+ G  + +   +        V
Sbjct: 341 DKDLMVKVDFESDKEIVEADKDKIEQVLTNLIDNAIKFSNPGGYIHVSTEKVKEKVHVRV 400

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +N G +IP D    +++RF           GVGLGL IV S INLH   +  +SSD   T
Sbjct: 401 QNKGKTIPPDEIDHIWDRFYKVDKARSGSPGVGLGLYIVRSIINLHNEDIWATSSDADGT 460

Query: 783 TINCRIPSKE 792
           T    + SK+
Sbjct: 461 TFTFTLKSKK 470


>gi|296448146|ref|ZP_06890045.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296254327|gb|EFH01455.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 899

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 121/563 (21%), Positives = 224/563 (39%), Gaps = 24/563 (4%)

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK------IVRVLNSFGEAGIAI 293
           +   F++         +A E+   + +S       ++ K      I  V  + G    A 
Sbjct: 346 ALPRFEDGAAAAGEPLTASERAAFDEISRALGAGARTGKGPARELIEAVGQATGCEPPAW 405

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE-LWEIDLAFLATNPSN 352
             S E      L     +L  L V + +  +     + NR+ ++ L   DL  LA     
Sbjct: 406 PESDEAEPIG-LARARALLDRLPVGVLV-ARGAQALYANRTLLDYLGYPDLTALAAEGGA 463

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
             L    R  +      N    +        +    +         TL  + ++ P  G 
Sbjct: 464 ARLFVGPRLQDASEGGANVLELRGEDGERLDADARLQAIDWDGGPATLVTLRSARPAAGA 523

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
                   ++ +L  +  + ++    T++      AV   DGRI+ ++  F  L   E  
Sbjct: 524 AEAARLGALENELARR-QSEMEELRTTLEATGAAYAVLDRDGRIRSASGGFGRLLGEEPE 582

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L+ G  +  + A   R    +   D         D  R S++          L+ +++ 
Sbjct: 583 ALA-GEPLAALFAEADR----AAVADYLRGREPGADGLRASVRA-----RKGALQLTLVG 632

Query: 533 LPNAQTMLTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           +   Q     +      R A+ AL        +A+  K  F+  VS+E+R+PL  IIGF 
Sbjct: 633 IGAEQRRCAVLRELGPRRGADEALEAARREAERANAAKTDFLAKVSHEVRTPLNAIIGFA 692

Query: 592 DLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           +++   + G L + +  +Y++ I  S   +L+LVND+LDL+ ++AG M+L+   I  N +
Sbjct: 693 EVMMEERFGPLGSERYKEYLKDIHTSGLHVLSLVNDLLDLSKIEAGKMELDVERIDANAM 752

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E    +  + + + + I++    +L   +AD + L QI   +LSNA+ F+  G  VI+
Sbjct: 753 IAECVSIMQPQANRSRVLIRLSLWPRLPRVLADGRSLRQILLNLLSNAVKFNEAGGQVIV 812

Query: 711 KAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
            +A  D G  +  VK+ G  + E   ++    F       +  G GLGL + ++ I  + 
Sbjct: 813 SSALTDAGYVVIRVKDTGIGMSESEIETALEPFRQVGP-HKASGTGLGLPVTKALIEANR 871

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
              SI+S     T +    P  +
Sbjct: 872 ASFSITSRRNEGTLVEVAFPPPQ 894


>gi|159026319|emb|CAO88896.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 641

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
           + L   LE L D  L  +I  +P+ +      N+ +  +   +L E  E LR        
Sbjct: 326 RDLARPLEKLRDYAL--NIQKIPSQKIRPQNFNIREINQLASSLEEMLERLRLWGEEIVK 383

Query: 566 --------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                    ++KN F+ + S+ELR+PL  IIG    +      S   ++ +Y++    ++
Sbjct: 384 SRQEAENASQLKNQFLANTSHELRTPLNGIIGSIRCVMDGFCNS-EEEEKEYLQQADKAA 442

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL +++DIL +A ++AG + ++   + L+ ++NEV       +   ++++ ++   + 
Sbjct: 443 VHLLEIIDDILSIAKIEAGKLSVDPEPVDLHQIINEVVSLQTASLQGKHLKLNLLFCPEN 502

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
               AD  +L Q+   ++SN++ F+  G T+ L    +    I ++ + G  I       
Sbjct: 503 PIVYADPTKLKQVILNVISNSIKFTETG-TISLITHLEYPQAIITIVDTGIGIDPQQQLK 561

Query: 738 VFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
           +F  FV    +   +  G GLGL+I ++F+ + GG ++ISS  +G  TT+   +P 
Sbjct: 562 LFRPFVMIDGSTTRKFSGTGLGLAISKNFMKVMGGDITISSQGQGLGTTVEIILPL 617


>gi|254240415|ref|ZP_04933737.1| hypothetical protein PA2G_01063 [Pseudomonas aeruginosa 2192]
 gi|126193793|gb|EAZ57856.1| hypothetical protein PA2G_01063 [Pseudomonas aeruginosa 2192]
          Length = 881

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 122/726 (16%), Positives = 246/726 (33%), Gaps = 83/726 (11%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG-----RVSGSCAFLRILSLDGIYSELA 179
           + L +   KL++  Q+     E+    + +  G      V       R  +L     EL 
Sbjct: 30  VALEEERHKLQRINQALIGRIESSAAQSDEAYGAFQYSVVLAEQVRERTDALSQTMLELK 89

Query: 180 E----TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
                 +    +            +S+       D    I+  N  ++       I  + 
Sbjct: 90  ASNQLLSDARLRAETAHQHLLDAIESISDAFVLFDPQQRIVLFNERFR----ALWIDSRA 145

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAID 294
            IG   +  +     R       E+   +  +     + +  ++  R     G A +  D
Sbjct: 146 RIGPGMRRAELHRLARSGGLIVEEQRGGDQQTLYRLRDERWLRMSERPTRDGGLAVLYSD 205

Query: 295 VSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           V++         E  +  +       + NL+  +A+   +  L+  NR F+EL  +  A 
Sbjct: 206 VTEIKLSETARPEQALAQKSHLLQRAVDNLSQGVAMVGADGVLELWNRRFLELCGL--AP 263

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +A + +  E++         P   +            + S        L +G+ L +   
Sbjct: 264 IAGHRAFAEVMAESELPLLTPRSQD-----------SQGSPLSAREQRLFDGRVLEIRTH 312

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P GG +  F ++T +           +      D +   +A    +   + +N  +  
Sbjct: 313 ALPTGGFVNTFTDITERYRHAEALRASERWIRLITDQVPALIAYLSDELVYEFTNKVYEE 372

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            ++     +  G  +R++         E       A    +F+    +L G    +  S 
Sbjct: 373 WYRWPSGSML-GRCLRDVHGAEHCRRLEPYFERALAGESVTFEIAETALSGEERYMQRSY 431

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------------- 565
           +         A   +   ++T+  R   AL +  + L +                     
Sbjct: 432 VPNRQADGRVAGLFVLIRDITERRRTAEALHQAYQNLEQRVRERTAELTTLNDQFKREIH 491

Query: 566 -------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                              +  K  F+  VS++L  PL     FT  L+     + +++ 
Sbjct: 492 ERSQVEARLREAKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALQERGSAARDNEA 551

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  IS S   + NL+  ++D++ +DAG++  + +   L +LL  +            
Sbjct: 552 --LVNNISHSLEDVENLLGTLVDISKLDAGVITPDIAPFELGELLGNLAAEYRQVAASEG 609

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+  ++ G L    +D+Q L +I   +LSNA+ ++ +G  V+L   R        V + 
Sbjct: 610 LRLDFVACGAL--VRSDQQLLARILRNLLSNAIRYTPRG-RVLLGCRRHRQRLSIEVWDT 666

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F     +   Q RG+GLGL+IV+    + G  V + S     +  
Sbjct: 667 GVGIAADKLGEIFQEFKRGESQRCHQDRGLGLGLAIVDKIARMLGHRVRVGSLPGKGSCF 726

Query: 785 NCRIPS 790
              +P 
Sbjct: 727 AIEVPL 732


>gi|254226752|ref|ZP_04920327.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V51]
 gi|125620729|gb|EAZ49088.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V51]
          Length = 1146

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +      + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 721 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842


>gi|123443916|ref|YP_001007887.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090877|emb|CAL13759.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 778

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 144/371 (38%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      
Sbjct: 313 LDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    + D  RL QI   ++ NA+ F+ +G  V+      N   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQGEIVVRVRRESNDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +             G G+GL++ +      GG +++ S 
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKSV 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGAGSCFTLTI 503



 Score = 41.5 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|324328565|gb|ADY23825.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 484

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 126/273 (46%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  I  HGG++   S     T+I   +
Sbjct: 444 LGLAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|89074574|ref|ZP_01161046.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34]
 gi|89049678|gb|EAR55237.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34]
          Length = 971

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 117/237 (49%), Gaps = 7/237 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            +   KA+  K+SF+  +S+E+R+P+  ++G   LL  ++   L S+Q +Y++ I+ S  
Sbjct: 460 RDEAEKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQ---LTSQQKRYLDVINRSGE 516

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL+++NDILD + ++AG + +  S   +  ++ +V   +  +     I ++     ++ 
Sbjct: 517 TLLDILNDILDYSKIEAGHLDIRSSNFSVVRMVTDVSNMLEGRSLAKRIGLECHISPQVE 576

Query: 679 SFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD-NGDFIFSVKNNGSSIPEDMC 735
                D  R+ Q+   ++ NA+ F+  G   + ++   D   + +FSVK+ G  I E+  
Sbjct: 577 GVWFGDESRIRQVLVNLVGNAIKFTDTGKVSIFVEPHPDMPDELLFSVKDTGIGIDEEAQ 636

Query: 736 KSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +F+ F   A  R    G GLGL+I +  +    G + + S     +     +P +
Sbjct: 637 SLLFSAFQQAAAGRKSIEGTGLGLAISKHIVAAMDGEIGLESVVGEGSCFWFALPLE 693


>gi|326317128|ref|YP_004234800.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373964|gb|ADX46233.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 663

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 153/395 (38%), Gaps = 34/395 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +   + L      E       +           G+ +   DG     NPA   L     
Sbjct: 125 LVGTLQALIRARTAEDSLRRSDRRFRAIYSQALSGIGLLERDGCFTDVNPAMARLLGRTR 184

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLE 527
             +  G  I   A           GW  F    T    +  + QG   L+  S     LE
Sbjct: 185 QEVL-GRSISEFA---------PPGWVDFVRDKTVDSGQSATWQGEFPLMRPSGQWVYLE 234

Query: 528 YSI-----------IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +SI           +    ++ +       + +  E+A     E L      K+ F+  +
Sbjct: 235 WSISAHVEPGLRMALAADISERVELDSRRQEVLEREQAARATAERL---SRTKDDFIAVL 291

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL  I G+  +LK         +  + ++ I  +      +++DILD++ +++G
Sbjct: 292 SHELRTPLNAIAGWVHILKRRGG---TPELIKGLDSIHRNVKAQARIISDILDVSRINSG 348

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            + L        +++     ++   + E ++ I + +   +G    D  R  QIF  +L+
Sbjct: 349 KLHLEREWTQPAEVVRSAIDALQASIAEKHLEIVLTAGEDIGPAWLDPTRFQQIFWNLLT 408

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
           NA+ FS+    + +  +R       +V++ G  I  +  + +F+RF  +      +  G+
Sbjct: 409 NAIKFSNDSGRIDVSMSRAGDALTLTVQDFGRGISPEFIEHLFDRFTQSDSPDNRRHGGL 468

Query: 755 GLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
           GLGLSIV+    LHGG V   S+     TTI   +
Sbjct: 469 GLGLSIVKHLAELHGGGVEAYSAGTGEGTTITVTL 503


>gi|224541343|ref|ZP_03681882.1| hypothetical protein CATMIT_00503 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525780|gb|EEF94885.1| hypothetical protein CATMIT_00503 [Catenibacterium mitsuokai DSM
           15897]
          Length = 457

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 2/236 (0%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +    L K + I+  F+  VS+E ++PLT I GF  +LK   L   + ++ +Y + I  
Sbjct: 213 NQMAVRLAKQETIRQQFISDVSHEFQTPLTAISGFATILKNENL--TDEQRKKYADIILF 270

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +S  L +L  ++L L  +D     L+ +   L + LN V +         +I I+ I   
Sbjct: 271 NSNRLSHLSKNMLQLTLLDGEDTALDKTEFPLIEQLNRVIEMEDNAALSKDIEIEFIHPK 330

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           K     AD  R+ Q++  +LSNA+ ++++   V ++  R   +     ++ G  + +D  
Sbjct: 331 KEFIIEADESRMEQVWINLLSNAIKYTNEHGVVTVEVRRTPTELQVRFEDTGVGMSQDAI 390

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +F RF          G GLGLSIV+  I+LH   + + S ++  +     IP +
Sbjct: 391 SHIFERFYRQDKSRTIEGNGLGLSIVKRIIDLHHYKIDVESQEDVGSVFTVYIPYE 446


>gi|73538800|ref|YP_299167.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72122137|gb|AAZ64323.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 660

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/382 (23%), Positives = 155/382 (40%), Gaps = 30/382 (7%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
            E                   G+      GR    NPA  +L +     L+         
Sbjct: 142 AEQSLRESEARFRAIYHQAIGGICTLDLSGRFVDVNPAMVTLLQRSGAELAGQPVAEFAP 201

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIP-LPNAQTM 539
                   ES G             +    QGT  L +       LE+SI   L +   +
Sbjct: 202 QDWRERVAESTG-----------RLQEHGWQGTFPLCNAQGEIMHLEWSISAVLQSGVKV 250

Query: 540 LTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               N+TD V  ER   +  E        + + + +K+ F+  +S+ELRSPL  I  +T 
Sbjct: 251 AVVSNITDRVNLERQREQLIEREQAARAAMERLNRMKDDFIAILSHELRSPLNVISIWTH 310

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L        + +  + +  +  + TI   L+ D++D++ ++ G +KL    +   +L+ 
Sbjct: 311 VLNQHIN---SDEGRRGLAAVERNITIQRRLIADLVDVSMLNVGKLKLELERVNPAELVR 367

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
              +S+  +  E N+ +       L  +   D  R  QI   ++SNA+ FS +G  V ++
Sbjct: 368 VAVESMQRQAQERNVTLVTEMPPVLADAAWLDPSRFEQILWNLVSNAIKFSPEGGIVRIE 427

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHG 769
            A + G     V ++G  I  +    +F+RF    +A+R Q  G+GLGL+IV   + +HG
Sbjct: 428 VASNGGALRVRVIDHGRGITAEFLPLLFDRFTQSEDANRRQHGGLGLGLAIVRQLVEMHG 487

Query: 770 GHVSISSSD-EGVTTINCRIPS 790
           G V  SS+     +T    IP 
Sbjct: 488 GTVQASSAGVGLGSTFEVTIPL 509



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 93/275 (33%), Gaps = 36/275 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E ++ +       I H     I   D +      N + V L +   A LA  P     
Sbjct: 141 AAEQSLRESEARFRAIYHQAIGGICTLDLSGRFVDVNPAMVTLLQRSGAELAGQPV---- 196

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPN--GQTLHV---IVTSNP 408
                       +   + W+E +       + H  + T+ L N  G+ +H+   I     
Sbjct: 197 -----------AEFAPQDWRERVAESTGRLQEHGWQGTFPLCNAQGEIMHLEWSISAVLQ 245

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            G  + +  N+T +V+LE +   L++ +      +           R+      F ++  
Sbjct: 246 SGVKVAVVSNITDRVNLERQREQLIEREQAARAAME----------RLNRMKDDFIAILS 295

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG--TLELLSDSVL 526
            E         I       +++ N  +G    AA+  +   +R+ +     + +L+   L
Sbjct: 296 HELRSPLNVISIWT--HVLNQHINSDEGRRGLAAVERNITIQRRLIADLVDVSMLNVGKL 353

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
           +  +  +  A+ +   V        ER +T   E 
Sbjct: 354 KLELERVNPAELVRVAVESMQRQAQERNVTLVTEM 388


>gi|268609962|ref|ZP_06143689.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus flavefaciens FD-1]
          Length = 468

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 122/261 (46%), Gaps = 4/261 (1%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +    +   +  +      A+    + L  A+ +KN F+  VS+ELR+PLT I G+ +
Sbjct: 209 MGDFSVRIENDSDDEIGELCTAINHMADELSTAEAMKNEFISSVSHELRTPLTAIKGWAE 268

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            L     G+      + V  I   +  L  +V ++LD + +  G   L  +T+ +   L 
Sbjct: 269 TLMLDG-GTSPDTMKKGVGVIVNETERLQQMVEELLDFSRMQNGHFTLQSATMDILAELG 327

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +     + K  +    I       L     D+ R+ Q+F  ++ NA+ +SS G  + +KA
Sbjct: 328 DAVLIYSEKARKETKEIIYDEPEMLPFVFGDKNRIRQVFINVIDNAVKYSSAGDRITIKA 387

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                + + SV++ G  I +     V  +F    H   RRG G+GL++ +  I++HGG +
Sbjct: 388 YESGDNVVVSVRDTGVGIKQSDLAKVKTKFYKANH--TRRGSGIGLAVADEIISMHGGTL 445

Query: 773 SISSSDEG-VTTINCRIPSKE 792
           SI S  EG  TT+   +P+K+
Sbjct: 446 SIDSEGEGLGTTVTITLPAKK 466


>gi|302873388|ref|YP_003842021.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|307688442|ref|ZP_07630888.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|302576245|gb|ADL50257.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
          Length = 481

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 117/257 (45%), Gaps = 4/257 (1%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           + ++ N        + L E N  L   ++ +  F  ++S+ELR+P+  I     ++  + 
Sbjct: 196 INSYSNFLGQYINNKMLVEINRKLEALEKDRLEFFANISHELRTPINIIYTANQMINVTN 255

Query: 599 LGSLNSKQS--QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             S    ++  +Y   I  +   L+ LV +++D+  +D+   ++      + ++L E   
Sbjct: 256 KNSSCPIKALSKYSNMIQQNCNRLIRLVENVIDITKIDSLSFEVRLINADIINILEETYF 315

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           SI   + +  ++I   ++        D   + +I   ILSN++ F+  G  + +    D 
Sbjct: 316 SIRDYVEKKGLKIYFNTNIDKKIIACDPYNIERIILNILSNSIKFTKPGGEIKISITSDE 375

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSI 774
                SV + G  IPE+M   +F RFV        Q  G G+GLS+V+  + LH G +S+
Sbjct: 376 NFVYISVSDTGIGIPENMIDRIFERFVQVDKSTMRQNEGSGIGLSLVKGLVELHNGTISV 435

Query: 775 SSSDEGVTTINCRIPSK 791
           +S     +    ++P+K
Sbjct: 436 NSVLGKGSEFIIKLPNK 452


>gi|53713403|ref|YP_099395.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52216268|dbj|BAD48861.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 511

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/499 (19%), Positives = 192/499 (38%), Gaps = 37/499 (7%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL----RSA 362
           ++  IL  +   +  F+  + +   N    E  +I        PS  ++ + +    +  
Sbjct: 30  YSARILETMQTGVIFFNTEQIISGINNLACEDLQIPRD-----PSGHKITDIISIIHQEK 84

Query: 363 NKLPEQLNWKTWKENIFS------VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +  PE +      E          + +S ET    +   +G  + +       G  +  F
Sbjct: 85  DIFPELIARLKSSETDMEKLPIDTLIRSLETKVQFF--ASGCIMQLET-----GRYLLAF 137

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRL 474
            N   +V  E   + ++                F       L +  + S       +  +
Sbjct: 138 RNTMDEVTHEHLLSMILARTKIFP-------WFFDLKRNKMLIDAHWFSYLGIPAGDCEI 190

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSII-P 532
           +       +         ++    L    I  SF    +   G+ E  S+  +  S    
Sbjct: 191 TIDKFFSRVHPNERDMLADALQKQLSEKEIPDSFSYRLQRGDGSWEWFSEQSMYLSKTND 250

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + +    ++ +    E  L       +++D +K++F+ ++S+E+R+PL  I+GF++
Sbjct: 251 GSPYRIVGVCHSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSN 310

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+    +     +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL 
Sbjct: 311 LIAGGIVDLDTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLT 370

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E+ Q    ++ +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A
Sbjct: 371 EIYQKYENRIPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYA 429

Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             D+G+     V + G  IP D  K VF RF         +G GLGLS+ ++ +   GG 
Sbjct: 430 LSDHGEKIYVFVADTGCGIPSDQYKKVFERFYKINSF--VQGAGLGLSVCKTIVEGLGGT 487

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++ S  +  +  +  +P 
Sbjct: 488 INVYSQLKEGSRFSVILPL 506


>gi|254442741|ref|ZP_05056217.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257049|gb|EDY81357.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1289

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/260 (25%), Positives = 125/260 (48%), Gaps = 22/260 (8%)

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
             +    L         +D++K++F+ ++S+E+R+P+  IIGF  +L    +  +  +Q  
Sbjct: 885  NQRTEELEIAKSKAEHSDKLKSAFLANMSHEIRTPMNAIIGFLHILDNKDISDVEREQ-- 942

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM---HEN 665
            +   I  SS  L+ L++DILDL+ ++AG  +++     + +L +E+       +    +N
Sbjct: 943  FNHIIRQSSKSLMALIDDILDLSAIEAGEAEISPQPCNVGELCDELGALFRESLSQDKKN 1002

Query: 666  NIRIKVISDGKLGSFVA-------DRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDN 716
            N+  ++  D      V        D  RL QI   ++SN++ F+ +G  + L    ++D 
Sbjct: 1003 NVDFRLTGDVPDHFLVGGATLVLIDPLRLKQILWNLISNSIKFTDEGE-IHLGYSVSQDK 1061

Query: 717  GD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHG 769
                     F V++ G  IP++  + +FNRF      G+   RG GLGL+I ++   L  
Sbjct: 1062 EMLEKASIEFIVQDTGIGIPKEEHQQIFNRFHKLDKAGKKLYRGTGLGLAITQTLTQLME 1121

Query: 770  GHVSISSSDEGVTTINCRIP 789
            G +++ S+    TT     P
Sbjct: 1122 GRITVDSTPGLGTTFKVTFP 1141


>gi|70730996|ref|YP_260737.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345295|gb|AAY92901.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 918

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 111/593 (18%), Positives = 224/593 (37%), Gaps = 71/593 (11%)

Query: 218 ANISYKKNTETEGIVFQKAIGES-RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKS 276
            +  Y+      G    KA+     +   +   + +++     +           GN + 
Sbjct: 120 VSTLYEPAATGTGQPPSKAVDAPWLRQLDQRAVQDLLARHPEARTLWY--WAGIDGNKQV 177

Query: 277 YKIVRVLNSFGEAG-IAIDVSKEITVNDQLTHTYEILHNLTVAI-AIFDQNRYLQFHNRS 334
           Y +  V       G + +++++     D L         L      ++D +  L  H+ +
Sbjct: 178 YLLRPVDEHHASEGWLGLELTEIDLALDPLG--------LHQGKYLLYDADGALVLHSAN 229

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPE------QLNWKTWK----ENIFSVYKS 384
               W++  +        D     L     LP+       +    W+      +  + + 
Sbjct: 230 ----WQVPGSLSRLQADEDSFG--LHRLGGLPDYIVLNKSVGNAGWRLVYYAPVSQLLRD 283

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
           S     T  L       VI      G        +   V   +     V +    I+   
Sbjct: 284 SRGPLYTTLLVTLLLFAVIF----LGARYIRLRLVEPAVRHYSALADSVSLNRRFIEVAP 339

Query: 445 EGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            G+ +   D GR+ L N + R               + ++     R  +E        AI
Sbjct: 340 VGLCLMRRDNGRLILCNESGRRW-------------LASVPGLRERILDEPPAR--VHAI 384

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
             + DD      GT   L+ +   Y+ +    A  +    +VTD   AE++L +      
Sbjct: 385 EHALDD------GTFIQLTCAPTGYNGV----AAVLCCISDVTDFKVAEQSLLQAKLLSD 434

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K  F+  +S+E+R+P+  I+G  ++L+T+   +L+++Q  Y+E    +S+ L+  
Sbjct: 435 QANHEKTLFLSTLSHEIRTPMYGILGSLEMLRTT---ALSAQQGDYLEATQQASSALMRT 491

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVA 682
           +ND LD++ +++G + L  +      L+ EV  S + +     +R+ V  D  +    V 
Sbjct: 492 INDTLDMSLIESGRLSLTSAPFSPVRLVEEVAFSYSARARSKGLRLYVTLDPNVAERVVG 551

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKS 737
           D +R+ QI + ++SNA+ F+  G  V L+   + G        F V ++G  I  +   +
Sbjct: 552 DGERIRQILNNLVSNAIKFTESGHVV-LRLHAEAGPSQAPRLRFQVVDSGPGIAPEFQAN 610

Query: 738 VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +F  +         +  G GLGL+I +    +  G +S  S     ++ +  +
Sbjct: 611 LFEPYYRVPSWLGQKAPGTGLGLAICQRLATMMQGQLSAISEPGLGSSFSFSL 663


>gi|83310416|ref|YP_420680.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945257|dbj|BAE50121.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1018

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 11/248 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A  ALT   E    A+  K++F+  +S+E+R+P+  +IG  +LL  ++   L++ Q   V
Sbjct: 488 AFEALTIAKENAEAANVAKSAFLAAMSHEIRTPMNGVIGMLELLDHTE---LDNDQRDLV 544

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                S   LL +++D+LD + ++AG ++L    + L+ ++  V Q++A      ++ + 
Sbjct: 545 STTRESGLSLLRILDDVLDFSKIEAGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTLS 604

Query: 671 VISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVK 724
              D  L    +AD  RL QI   +  NA+ F+++G   + +     +G         V 
Sbjct: 605 AFVDPGLPPVLLADPVRLRQILFNLAGNAVKFTAQGLVAIHMGNGGTDGQGRQILSIRVA 664

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I   +   +F  F        RR  G GLGLSI    ++L  G     S     +
Sbjct: 665 DTGIGIDSSLRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPGVGS 724

Query: 783 TINCRIPS 790
           +  CR+P 
Sbjct: 725 SFWCRLPL 732


>gi|254785971|ref|YP_003073400.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237685403|gb|ACR12667.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 620

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 128/261 (49%), Gaps = 10/261 (3%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT-DL 593
           N   + +   ++D       L        KA  IK+ F+ ++S+ELR+PL ++IG+T  L
Sbjct: 352 NQLLLESKKMISDQKALNAELAIAKRHAEKALSIKSEFLANMSHELRTPLNSVIGYTVRL 411

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK   + S  + Q + +E I  +   LL ++NDILDL+ ++A  + L+   + LN+L  +
Sbjct: 412 LK--HVNSDRAIQLKALEAIERNGRHLLAMINDILDLSKIEAQKLDLSIRPVDLNELCEQ 469

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
               +     E N+ +  I   +  +   D  RL QI   +LSNA+ ++++G  + ++  
Sbjct: 470 AVTQVGPAAEEKNLELVFIR-SQTATVHTDFTRLSQILLNLLSNAIKYTNEGG-IKIELE 527

Query: 714 RD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLH 768
           RD         V + G  I  +  K +F RF       +    +G GLGL+IV S   L 
Sbjct: 528 RDISEKYVSLRVIDTGIGIEPENQKRLFLRFEQFDDSSRFQVGKGSGLGLAIVASLSKLL 587

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           G  VS++S     +T + R+P
Sbjct: 588 GVRVSVASDVGKGSTFSLRVP 608


>gi|229166865|ref|ZP_04294612.1| hypothetical protein bcere0007_18330 [Bacillus cereus AH621]
 gi|228616493|gb|EEK73571.1| hypothetical protein bcere0007_18330 [Bacillus cereus AH621]
          Length = 351

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPV--EKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++       +T  L+  L ++  +      E  + + + 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLD 229

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D       AD++ + Q++  ++ N++ F+  G T+ +           S+ + G  I E
Sbjct: 230 MDK--VCVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    RIP+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|330980744|gb|EGH78847.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 645

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 120/265 (45%), Gaps = 13/265 (4%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +         +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL
Sbjct: 233 NNRAENLHRASLEQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLL 292

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+ +     +QS+Y    + S+  LL ++NDILD + ++   +++      L +L++  
Sbjct: 293 ETTHM---THEQSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIPFNLAELVSAS 349

Query: 655 KQSIATKMHENNIRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             +      +  + +++     L +   + D  R+ QI   ++ NA+ F+ +G  V + A
Sbjct: 350 THAFNHSAAQRTLLLELHIQPGLETLNVIGDPTRIRQILVNLIGNALKFTEQG-KVCVDA 408

Query: 713 A---RDNGDFIFS--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFI 765
                DN    F+  V++ G  I  +  +S+F+ F         +  G GLGL I  +  
Sbjct: 409 RWAMLDNELLHFTCAVQDGGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLA 468

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
              GG +   S +   +    +IP 
Sbjct: 469 ERMGGTLHAESEEGSGSLFTLQIPL 493


>gi|304391854|ref|ZP_07373796.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130]
 gi|303296083|gb|EFL90441.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130]
          Length = 526

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 118/228 (51%), Gaps = 4/228 (1%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASSTILLNLV 624
           +  K+ F+  +S+ELR+PL  I+GF++++    +G ++     +Y+  I  S   LL L+
Sbjct: 267 NLAKSRFLATMSHELRTPLNAILGFSEIMSNEVMGPIDNDNYKEYLADIHRSGAHLLKLI 326

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N+ILDL+ ++AG  +LN   + L   + E +Q +  K ++  +++ +     + +  AD 
Sbjct: 327 NEILDLSRIEAGRYELNEEPVKLGHAVEESQQMVKLKANQKKVQLVIQLQPDMPAVWADA 386

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
           + + QI   +LSNA+ F+  G T+ LK      G    ++++ G  IPE+    V + F 
Sbjct: 387 RAVRQIVLNLLSNALKFTPSGGTIWLKCGWTSGGGQYITIRDTGPGIPEEEIPIVLSSFG 446

Query: 744 SNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +   +   +G GLGL IV++ + +H G   + S     T +    P
Sbjct: 447 QGSIAIKSAEQGTGLGLPIVQALMQMHDGRFDLRSKLRAGTEVTATFP 494


>gi|39934324|ref|NP_946600.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648172|emb|CAE26692.1| sensor histidine kinase with a response regulator receiver domain
           [Rhodopseudomonas palustris CGA009]
          Length = 1122

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + +  L    EA   A+  K+ +V  +S+ELRSPL  I G+  LL+ 
Sbjct: 641 QTQLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +L  +    +  +  S+  L  L++ +LD++ ++AG + L+   +   + L+++  
Sbjct: 701 D--NTLPPRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDEVRFGEFLDQLVG 758

Query: 657 SIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +    +I               AD +RL Q+   +LSNA+ F+ +GS V       
Sbjct: 759 MFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNAIKFTQEGS-VHFIVHYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
           N      V++ G  I  D  + +F  F   A        G GLGL+I +    + GG ++
Sbjct: 818 NPVAELEVRDTGPGIHTDDLERIFAPFERGALGAAQPHSGTGLGLTISKLLAGVMGGDLT 877

Query: 774 ISSSDEGVTTINCRI 788
           ++S+ +  +T   ++
Sbjct: 878 VTSTPDKGSTFRVKL 892


>gi|171915305|ref|ZP_02930775.1| sensory transduction histidine kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 621

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT    A + +   K+ F+  +S+ELR+P+  ++G   LL+     +L   + +Y++   
Sbjct: 254 LTTAEMAAQASSRAKSDFLATMSHELRTPMNAVLGMIQLLQK---ANLKPVEHEYLKTAY 310

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VIS 673
                L+ ++NDILD + +D G + L    + L  LL +V  S+  +     + +   I+
Sbjct: 311 EVGDRLMTMINDILDFSQIDVGTIALVRDRVDLPALLEDVTASVRDEARLRKLDLTAHIA 370

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
            G    F  D  RL Q+   ++ NA+ F+  G   I       G+  F +++ G  I ++
Sbjct: 371 PGCPTLFWGDNTRLRQLLRHVVGNAVKFTDSGYVRITAKVVLPGEIQFKIEDTGVGIGKE 430

Query: 734 MCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +++F+ F  +      +  G GLGL+I +   +   G +   S     TT +  +P
Sbjct: 431 NQEALFDAFYQSDSSIRRRHGGTGLGLAISKRLCDAMKGRIWFESEVGRGTTFHIALP 488


>gi|254442776|ref|ZP_05056252.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257084|gb|EDY81392.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1251

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 127/248 (51%), Gaps = 16/248 (6%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            R L +      ++D++K+SF+ ++S+E+R+P+  IIGF++LL          +  +Y   
Sbjct: 858  RELEKAKLQAEESDQLKSSFLANMSHEIRTPMNAIIGFSNLLCQRDNDPDEEE--EYSNI 915

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN-----I 667
            I ++ T L +L++DILDL+ ++AG +++      LN L+ E+      ++ + +     +
Sbjct: 916  IQSNCTSLSHLIDDILDLSIIEAGQLQVKQEDFDLNSLMRELDNVFRAQLKQESREHLAL 975

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSV 723
            R++     +    + DR RL QI + ++SNA+ F+S G    + A        G   F V
Sbjct: 976  RVEEHLGERSSYILCDRDRLRQILTNLISNALKFTSTG---YVSARYTIDPAAGKIRFEV 1032

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            ++ G  I      S++ +F       ++  RG GLGL+I ++ + L GG +++ S+    
Sbjct: 1033 EDTGIGIEAKHLDSIWVQFRKIEDHTKQLFRGTGLGLAITKTLVQLLGGSITVQSTPNEG 1092

Query: 782  TTINCRIP 789
            +     IP
Sbjct: 1093 SCFKFEIP 1100


>gi|189466377|ref|ZP_03015162.1| hypothetical protein BACINT_02752 [Bacteroides intestinalis DSM
            17393]
 gi|189434641|gb|EDV03626.1| hypothetical protein BACINT_02752 [Bacteroides intestinalis DSM
            17393]
          Length = 1352

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 140/323 (43%), Gaps = 13/323 (4%)

Query: 468  KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
            +     L+PG ++  +    +R   E  G ++   I+  +   R      +  L  + + 
Sbjct: 721  RLIYTNLAPGNYVLKVREAKNRL-GEDMGEEIALNIVIHYPWYRSFWAYLVYFLIVAGII 779

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            Y  + + NA+  L      +    ER        + + +++K  F  ++S+E R+PLT I
Sbjct: 780  YVFLRVRNARKALALSLAKEKDEKER--------IEEVNKMKLRFFTNISHEFRTPLTLI 831

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            +G  ++L  S+  SL+  +   +  I  ++  L  L+ ++LD    + G MKL    + +
Sbjct: 832  VGQIEMLLQSEKLSLSVYRR--LHSIHKNAMNLRFLITELLDFRKQEQGFMKLKVECVDI 889

Query: 648  NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
               L +V +S      + NI        +      D  ++ +    +LSNA  ++S G +
Sbjct: 890  VPFLEDVYRSFWELARKRNIVYTFEHPNEKMEVWFDPVQMQKAVFNLLSNAFKYTSDGKS 949

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
            V +   +       +V + G  IP+D    +F RF     + QR   G G+GL++ +  I
Sbjct: 950  VKVSVRKQQQIMEITVSDTGCGIPQDDLSRIFERFYQGNEKQQRGIAGSGIGLALTKGII 1009

Query: 766  NLHGGHVSISSSDEGVTTINCRI 788
              H G +++ S  E  ++   ++
Sbjct: 1010 EAHRGDIAVESVLEEGSSFKIQL 1032


>gi|157374892|ref|YP_001473492.1| sensor protein LuxQ [Shewanella sediminis HAW-EB3]
 gi|157317266|gb|ABV36364.1| sensor protein LuxQ [Shewanella sediminis HAW-EB3]
          Length = 583

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNE---ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
           Q +L    +  + + +  L    E       ++     FV  +++ELR+PL+ ++G  DL
Sbjct: 183 QLLLFCDMLHSAYQRQALLNRTLEEKRRAEYSERTARDFVAMINHELRTPLSGLLGSADL 242

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           ++ +++    + Q Q ++ +  S  +L  ++ND+LD++ ++AG++K+  +      L + 
Sbjct: 243 MRDTQM---TAHQQQLLKTMHQSGELLEVIINDLLDISKMNAGMLKIIDTKFSPEQLCSM 299

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           ++    TK  E  +  ++  D  + +  + D  R+ Q+F  ++ NA+ F+ +G  + +K 
Sbjct: 300 IQNIFTTKTAELGLAFELTFDEHIPARLLGDPDRIKQLFVNLIGNAIKFTDQG-KISVKV 358

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGG 770
                 F F++ ++G  IP+D    +F  FV   NA      G GLGL+I +  ++   G
Sbjct: 359 DWVQEMFHFTISDSGCGIPKDKLAHIFEPFVQVNNASNRPHEGTGLGLAICKLLVDEMKG 418

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            +S+ SS++  T  + R+P K
Sbjct: 419 EISLESSEDEGTQFSVRLPLK 439


>gi|118445102|ref|YP_879165.1| two-component sensor histidine kinase [Clostridium novyi NT]
 gi|118135558|gb|ABK62602.1| two-component sensor histidine kinase, putative [Clostridium novyi
           NT]
          Length = 463

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 124/249 (49%), Gaps = 3/249 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T  +  +  +    L    + + K +++K  F+  +S+ELR+PLT+I G+T  L      
Sbjct: 214 TKSSNDEFGKLADTLNYMAQEILKNEKLKTEFIASISHELRTPLTSIKGWTVAL-NLCDP 272

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +  S+    ++ I   +  L NLV ++LD + + +G + L    + +++LL  +++ +  
Sbjct: 273 NNKSEFEDGLKIIEEETDRLSNLVEELLDFSKLSSGKITLKKDYVDIHELLRYLQKQLQP 332

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +  ++NI + +    ++ +  AD  RL Q F  IL NA+ F+S    V +  + +    I
Sbjct: 333 RASKDNINLSLECKNEIPNIYADINRLKQSFMNILDNALKFTSSDGEVKITLSSNKDSVI 392

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            S+K+NG  IP D    V  +F    +   +   G+GLSI    I+LH G++ I S +  
Sbjct: 393 ISIKDNGCGIPLDDLPRVTEKFYKGQNSKSKN--GIGLSICNEIISLHNGNLQILSEENK 450

Query: 781 VTTINCRIP 789
            T +   +P
Sbjct: 451 GTEVIVCLP 459


>gi|78046879|ref|YP_363054.1| putative two-component system sensor protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325924816|ref|ZP_08186251.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
 gi|78035309|emb|CAJ22954.1| putative two-component system sensor protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325544746|gb|EGD16094.1| signal transduction histidine kinase [Xanthomonas perforans 91-118]
          Length = 291

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR+  E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 43  ELDQQAEQLREVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 102

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S+  L  +V+D+LDLA ++AG + ++     L DL   ++             +    
Sbjct: 103 SGSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDVGTTTLIFED 162

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V + G  IP +
Sbjct: 163 PPVLPLLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVHDTGIGIPAE 222

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINSVVGQGSEFYVVLP 280


>gi|116053634|ref|YP_793961.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296392349|ref|ZP_06881824.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
 gi|313111575|ref|ZP_07797374.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|115588855|gb|ABJ14870.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310883876|gb|EFQ42470.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 595

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 151/357 (42%), Gaps = 19/357 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +F   GRI+ +NP    + +   +    G  I  I +       
Sbjct: 257 ERRLQAVLDSIDDGLVIFDNQGRIEHANPVA--IRQLFVSNDPHGKRIDEILSDVD---- 310

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                 +  A++    DE              +L +S+ P+ +         +      E
Sbjct: 311 --VQEAVEKALLGEVQDEAMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRDVTE 368

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +            + +++ FV   S+ELR+P+T +     LL+        S+++  ++ 
Sbjct: 369 QR---------AFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLIQT 419

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +    + L+ L+ND+L+ +    G+ KL  ++  L DLL + +Q    K     + +++ 
Sbjct: 420 VDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFTPKGEARRVSLQLE 479

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +L     DR ++ ++   +L NA+  SS+G  + L+A R     + +V++NG  IP 
Sbjct: 480 LGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGIPF 539

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  FV      ++ G GLGL++ +  I LHGG +++ S           +P
Sbjct: 540 SQQGRIFEPFVQVG--RKKGGAGLGLALCKEIIQLHGGRIAVRSQPGQGARFYMLLP 594


>gi|222098143|ref|YP_002532200.1| two component system histidine kinase [Bacillus cereus Q1]
 gi|221242201|gb|ACM14911.1| Two component system histidine kinase [Bacillus cereus Q1]
          Length = 484

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  I  HGG +   S     T+I   +
Sbjct: 444 LGLAIAKQIIEEHGGEIWAESELGEGTSIFFSL 476


>gi|98990176|gb|ABF60145.1| two-component histidine kinase [Monilinia fructicola]
          Length = 1316

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 13/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   +    L   Q + +  +   + 
Sbjct: 718 REAAEFANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDT---DLTQYQREMLNIVHNLAN 774

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +    D  + 
Sbjct: 775 SLLTIIDDILDLSKIEANRMIMEEIPYTLRGTVFNALKTLAVKANEKFLDLTYRVDSSVP 834

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGST-------VILKAARDNGDFIFSVKNNGSSI 730
              V D  RL QI   ++ NA+ F+  G         V    A +     F V + G  I
Sbjct: 835 DHVVGDSFRLRQIILNLVGNAIKFTEHGEVSLTIQKAVQDHCAPNEYAVEFCVSDTGIGI 894

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             D    +F+ F        R   G GLGLSI +  +NL  G V + S     ++    
Sbjct: 895 QADKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMRGDVWVKSQYGKGSSFYFT 953


>gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 975

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 115/242 (47%), Gaps = 5/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A     ++ E L + D  K +F  +VS+E R+PLT ++G  + +  S  G+L    ++ 
Sbjct: 312 QAYEEERKRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLAS--GTLPEAAARE 369

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ +  ++T LL LVN +LD + ++AG ++ ++  + L     ++  S  +      + +
Sbjct: 370 LDVVHRNATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSFRSVAERAGLTL 429

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V        F  DR+   +I   +LSNA  F+ +G T+ ++     G     + + G+ 
Sbjct: 430 TVDCPPLPAPFYVDREMWEKIVLNLLSNAFKFTFQG-TITVRLRARTGQAWLEILDTGTG 488

Query: 730 IPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP +    +F RF     A      G G+GL++V+    L GG V + S +   +     
Sbjct: 489 IPPEDLPHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVESVEGQGSCFTVV 548

Query: 788 IP 789
           +P
Sbjct: 549 LP 550



 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 123/303 (40%), Gaps = 5/303 (1%)

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
              E     L   +       R   +  +E L      Y + P    + +    +  +  
Sbjct: 672 LLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARVCSTLELS 731

Query: 550 RAERA---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           R  R       + EAL++A ++++ F+   S+EL++PL       +L++ S         
Sbjct: 732 RMRRESSLQEARAEALKRAVQVRDEFLSIASHELKTPLMAFRLQLELIERSLGPESRLSL 791

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +  +         L  LV  +LD++ +  G + L+   + L +++ E  + +   +    
Sbjct: 792 ASRLSVAGRQVQRLNTLVETLLDVSQLSMGRLMLHLEEVDLAEVVGETVEQLRGSLERAG 851

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             + V  +  L     DR R  ++   +L NA+ +  +G  + ++A ++ G    +V + 
Sbjct: 852 CSLTVEVERPLVGRY-DRVRFERVVMNLLDNALKYG-EGKPLRVRAWKEQGISRLTVADQ 909

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I  +    +F RF       Q  G+GLGL I    +  HGGH+ + S+    TT   
Sbjct: 910 GMGISPEDQARIFERFERAVPGRQYGGLGLGLWIARQVVEAHGGHIQVDSTPGQGTTFTV 969

Query: 787 RIP 789
           +IP
Sbjct: 970 QIP 972


>gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1]
 gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1]
          Length = 1044

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 136/314 (43%), Gaps = 16/314 (5%)

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-----------VLEYSIIPLPNAQT 538
           ++ E    D   A+  +F     + Q T                   +   I  +     
Sbjct: 454 HWREWVHPDYHKALSQAFSHAITNAQDTFVQFQARHQNGNWVWFKAFISVVISGIRVVGL 513

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               V++TD  RA+  + +  +      E K+ F+  VS+E+R+P+  ++G  DLL+ + 
Sbjct: 514 RGVMVDITDVYRAKEEVQKARDLAVSTAENKSRFLAIVSHEIRTPMNGLLGMLDLLREN- 572

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              LN +Q   ++    S   LL+LV+D++D   ++AG M+ +Y    +++LLN     +
Sbjct: 573 -NGLNDEQKDTLQVAWQSGRNLLSLVDDVMDFNRIEAGEMQFHYERTNIHELLNAALTMV 631

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           A   ++  + + ++ +  L    V D  ++ +I + +LSNA+ F+  GS ++        
Sbjct: 632 AADAYKRGLDVGLVLESNLPELVVCDAVKVRRILANLLSNAVKFTQHGSVLLWAEMLPGN 691

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                VK+ G  I     + +F  FV   ++   +  G GLGL + +  +    G + + 
Sbjct: 692 RLYVEVKDTGVGIGAQEQQQLFQAFVLGDSSSTRRHGGSGLGLVLAQRILEAMNGRIGVK 751

Query: 776 SSDEGVTTINCRIP 789
           S     ++    +P
Sbjct: 752 SIKGLGSSFYFELP 765


>gi|21109342|gb|AAM37873.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1225

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 12/248 (4%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   + +  Q  Y 
Sbjct: 837  AWQLAVHKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---TQDPTQRSYT 893

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            E I  +   LL LVND LDLA +++G ++L++    +  L+ EV+  +A    E  +R  
Sbjct: 894  ESIRRAGAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFS 953

Query: 671  VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
            +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 954  LEI-GLLGDITASGDSTRIRQILLNLLNNAIKFTERG-VVALKLTTLGSYQGLRFEVADT 1011

Query: 727  GSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F RF          +  G GLGL+I +      GGH+ + S     T 
Sbjct: 1012 GPGINAEQKARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTR 1071

Query: 784  INCRIPSK 791
                +P +
Sbjct: 1072 FVVDLPLR 1079


>gi|264678722|ref|YP_003278629.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
 gi|262209235|gb|ACY33333.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
          Length = 1089

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 150/383 (39%), Gaps = 34/383 (8%)

Query: 418 NLTVQVDLETK-YNTLVKVQGETIDHLSEGVAV-FGPDGRIKLSNPAFRSLWKTEENRLS 475
           N+T  V    K            +D +  G+ V +   G++  SN               
Sbjct: 359 NVTKPVQAAAKGVQETDAFNLTLLDTVPVGLCVLYRSTGKVAFSNELAAQWLG------- 411

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAII-TSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                       +  +N      L   I+ T+     +S+ G    L    L    +P  
Sbjct: 412 --------IGADAELHNTPGANGLLRQIMGTTKPGSIESIPG----LDGRPLHVRFVPTR 459

Query: 535 NAQ---TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                  +  F +++     ER   +     ++A E K++F+  +S+E+R+PL  ++G  
Sbjct: 460 YKGQDVVLCAFADISARAEMERTQEQAKVQAQRAVEAKSTFLASMSHEIRTPLYGLLGTL 519

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           ++L  +    L+ +Q +++++I  SS IL  L++DILD+  +++G + L        +L+
Sbjct: 520 EILAMT---PLSEEQRRHIDHIQNSSGILQQLISDILDVTKIESGQLALEAVAFDPGELV 576

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
                S A    +  + I    D  +      D  R+ QI + +L NA+ F+S G  +  
Sbjct: 577 QSAVASCAPAGEQKGLVIYSCVDTSVPACVYGDAARIRQILTNLLGNAIKFTSAGHVITR 636

Query: 711 ----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFI 765
                   +       V ++G  I  +  K +F  F   N       G+G+GL++     
Sbjct: 637 MRAESLPDEKVRLSLQVVDSGPGIGPEERKRLFEPFYQINGGAHTVGGMGIGLALSAKLA 696

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
            L G  + ++S     ++ +  +
Sbjct: 697 KLMGSELHVTSEPGLGSSFSVDL 719


>gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
 gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
          Length = 888

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 10/283 (3%)

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           + Q TL +   SV    I  +      LT V   +  R    LT   +A  +A   K+ F
Sbjct: 471 AWQITLVIAIASVAVLLIQFIAFRTGTLTEVIQEEVERKTNDLTNAQQAAEQATIAKSQF 530

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+E+R+PL  IIGF +L +             +++ IS+SS  LL LVND+LD + 
Sbjct: 531 LANMSHEIRTPLNAIIGFAELAQDESNLMT---IQSHLKGISSSSEALLGLVNDVLDYSK 587

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIF 691
           ++AG ++L+ +   L +L   ++    T+     +  ++  D       V+D  RL QI 
Sbjct: 588 LEAGKLELHRAPFSLQELAKRLRSIFETQARARGLSFRIDVDCPANKDIVSDETRLQQIL 647

Query: 692 SKILSNAMDFSSKGSTVILK---AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             + SNA+ F+  G  + ++           +  VK+ G  + E     +F++F      
Sbjct: 648 INLCSNAIKFTRHGD-IHVQMQVLEEQETQLMLVVKDTGIGMTESERARIFDQFTQADSS 706

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             R   G GLGLSI  +   L  G V + S     +    R+P
Sbjct: 707 ITRHYGGTGLGLSITMTLTELLDGQVMVESEQGVGSQFTIRLP 749


>gi|331270597|ref|YP_004397089.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329127147|gb|AEB77092.1| two-component sensor histidine kinase, putative [Clostridium
           botulinum BKT015925]
          Length = 463

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 120/247 (48%), Gaps = 3/247 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  +    L   +E L K +++K  F+  VS+ELR+PLT+I G+T +  +    +  S
Sbjct: 218 NDEFGKLADTLNYMSEELLKTEKLKTEFIASVSHELRTPLTSIKGWT-IALSLCDPNNKS 276

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +    ++ I   +  L +LV ++LD + + +G + L    + + +LL  +++ ++ +  +
Sbjct: 277 EFEDGLKIIEEETDRLSSLVEELLDFSKLSSGKITLKKDFVNIYELLIYLQKQLSPRASK 336

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           +NI I +     +     D  RL Q+   IL N++ F+S G  +    +      I ++K
Sbjct: 337 DNINILLECKSTIPDIYVDVNRLKQVLMNILDNSLKFTSNGGEIKTILSSTMDHVIITIK 396

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +NG  IP +    V  +F    +   +   G+GLSI    I+LH G + I S +   T +
Sbjct: 397 DNGCGIPPEDLPRVTEKFYKGKNSNSKN--GIGLSICSEIISLHNGTLKILSEEHNGTEV 454

Query: 785 NCRIPSK 791
              +P +
Sbjct: 455 IITLPLQ 461


>gi|300864609|ref|ZP_07109467.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337358|emb|CBN54615.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 992

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 123/707 (17%), Positives = 250/707 (35%), Gaps = 80/707 (11%)

Query: 128 SKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKK 187
            +  + +RK G +F +             GR+             GI  ++ E     K 
Sbjct: 316 QQEIQGIRKNGATFPMELAVSEMRL--ASGRL-----------FIGICRDITERKEAEKT 362

Query: 188 LSNHISVFKVLFDSL-------DFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
           L     +  +  DS+       D   W++       W      + +E  G      +   
Sbjct: 363 LRKQSQLLDLANDSITVLDLNDDIADWNQGARRLYGW------RKSEVMGKNIHTLLQTE 416

Query: 241 RKLFKEEIKKRMISSSALEKNFCETV---STLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
                 +IK   +   A E     T    S +   +  + +            I  D+S 
Sbjct: 417 FPESLPKIKAAFLRDGAWEGELLHTKQDGSKVTVASRWTLQRDEDGLPLASLQINNDISD 476

Query: 298 EITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
                  L  + ++L  +   I  F    D++   +  N++F  +  +         S  
Sbjct: 477 RKIAEFALRDSQQMLQLVMDNIPQFIYWKDRDFIYRGCNQNFARILGL--------KSPT 528

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH-----KDTWHLPNGQTLHVIVTSNP 408
           +++        +PE+   + ++     + +++          T  LPN  T+ V V+  P
Sbjct: 529 DIIGLTDYDLPIPEE-QAEHYRAISRDILETNTPQYHLLKTFTSALPNSSTMWVDVSKVP 587

Query: 409 R-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
                    G +  FE++T +   E       +    T +  + G+A    +G++ L N 
Sbjct: 588 LTNGEDSVIGIMCSFEDITDRKQAEVAIAESEQRFRSTFEQAAVGIAQTNMEGKLLLVNQ 647

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            F  +       L      +NI          +    L    +  +  E++ L+   EL+
Sbjct: 648 KFCDILGYSREELLENK-FQNITHPEDLKIELAYINQLLTGELNIYSMEKRFLRKNGELV 706

Query: 522 SDSVLEYSIIPLPNAQT--MLTFVNVTDSVRAERALTEKNEAL--------------RKA 565
             + L  S++   +     M    ++ +   A+ AL ++ + L              RK 
Sbjct: 707 WGN-LTVSLLREQDGGEYLMAVVEDIRERKEAQEALQKRAQELAKTTRILSQTATVLRKR 765

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           ++  + F   VS++L++PL  I   +  ++     ++       +  +      +  L++
Sbjct: 766 NQELDQFAYVVSHDLKAPLRAIANLSSWIEEDLSEAMTEDTQHQMNLLRGRVHRMEALID 825

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            +L  + V  G ++     + +  LL E+  SIA         +KV     +     +R 
Sbjct: 826 ALLQYSRV--GRIQTASEIVNVASLLAEIIDSIAP-----PESLKVEVGSGMPILTTERV 878

Query: 686 RLLQIFSKILSNAMDF-SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            L Q+F+ ++SNA+   SSK  +V +        + F+V ++G  I       VF  F +
Sbjct: 879 LLQQVFANLISNAVKHHSSKSGSVKISLEEKEDFYEFAVTDDGPGIAPQYHDKVFVIFQT 938

Query: 745 NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              R +    G+GLS+V+  +   GG + + SS+    T     P +
Sbjct: 939 LEARDKVENTGIGLSLVKKIVENQGGTIKLESSEGQGATFRFTWPKQ 985



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/349 (11%), Positives = 108/349 (30%), Gaps = 32/349 (9%)

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV---------LNSFGEAGIAID-- 294
           + +++++ +    +K F   +   +        +            L   G +    D  
Sbjct: 167 DTLRQQINNFVVSQKEFQAII---DEERRHWVDLTNFVQIAALFVGLLGGGASWYLFDRL 223

Query: 295 ----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
                ++E ++ +  T    ++ N    I   D+   ++  N +  +++  +   +    
Sbjct: 224 DRELTNREASLQESKTRIQAVVDNAADGILTLDEQGNIESFNLAAEKIFGWEGKEVIGQN 283

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----T 405
               + +     +      N+ T      ++ +     +      NG T  + +      
Sbjct: 284 LRKLIAKPAHEDSTGNYLQNFLTNSTAKLNICQ----QEIQGIRKNGATFPMELAVSEMR 339

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
                  I +  ++T + + E         Q + +D  ++ + V   +  I   N   R 
Sbjct: 340 LASGRLFIGICRDITERKEAEKTLR----KQSQLLDLANDSITVLDLNDDIADWNQGARR 395

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
           L+   ++ +        +         +     L            K     + + S   
Sbjct: 396 LYGWRKSEVMGKNIHTLLQTEFPESLPKIKAAFLRDGAWEGELLHTKQDGSKVTVASRWT 455

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           L+     LP A ++    +++D   AE AL +  + L+   +    F+ 
Sbjct: 456 LQRDEDGLPLA-SLQINNDISDRKIAEFALRDSQQMLQLVMDNIPQFIY 503


>gi|228932077|ref|ZP_04094969.1| hypothetical protein bthur0009_5620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827660|gb|EEM73402.1| hypothetical protein bthur0009_5620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 462

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 208 TTTRNDEIGELSSSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 265

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 266 TSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNA 325

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 326 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSHINISVTEEHKRIS 384

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 385 ITIEDEGEGIPSEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 444

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 445 DHGSCFTISLPS 456


>gi|188026160|ref|ZP_02961099.2| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827]
 gi|188021856|gb|EDU59896.1| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827]
          Length = 922

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 131/255 (51%), Gaps = 7/255 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   ++++  V+ E++L +  +A  +A+  K+ F+  VS+ELR+PL  IIG  +LL+  +
Sbjct: 416 ICVLIDISIRVQMEKSLQDVADAAEQANHAKSMFLATVSHELRTPLYGIIGNIELLQRLE 475

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ K ++ V  +  SS++LL +++DILD + +++  + + Y      D+   V  + 
Sbjct: 476 ---LSDKANRLVTTMDNSSSLLLQIISDILDFSKIESNQLNIEYKLFNCRDVFAFVLANY 532

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              + +  I +    +  +    ++D  RL Q+ S I++N++ F+  G  V     RD  
Sbjct: 533 LPLVAKKQIALYSFIEPNVPDLLLSDAVRLQQVISNIINNSIKFTDSG-FVFFYVWRDEN 591

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSIS 775
                +K++G  +P+ +   +F+ F     +     +G GLGL+I E  INL  G + ++
Sbjct: 592 YLKIEIKDSGIGMPQAVVLQLFDPFFQVHDQNNLGHKGTGLGLAICEKLINLMDGDIEVN 651

Query: 776 SSDEGVTTINCRIPS 790
           S     ++   RIP 
Sbjct: 652 SQIGLGSSFIIRIPL 666


>gi|218780262|ref|YP_002431580.1| multi-sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761646|gb|ACL04112.1| multi-sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 504

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 152/385 (39%), Gaps = 32/385 (8%)

Query: 421 VQVDLETKYNTLVKVQGE-------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             ++LE K    +   G+        I+ L  G+ V   +G++ L NPAF        + 
Sbjct: 131 ETLELEAKRQRTLADLGKEQSRVRTIIEALPNGMVVTNQEGQVVLMNPAFLRHLGLPPDT 190

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-FDDERKSLQGTLELLSDSVLEYSIIP 532
                       + + Y  +    +L   I    F D  ++      L  D  L     P
Sbjct: 191 --------EPGKSMNEYVPDDGVVNLAMEISQGKFSDADQAPAVEFALSEDKYLLARGRP 242

Query: 533 L--PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   + + +   V + D    +             D +K+ FV  VS+ELRSPL  I   
Sbjct: 243 VLSEDGECLGAVVVLNDVTAMK-----------MLDRLKSEFVAKVSHELRSPLATIREQ 291

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
             L+    +     ++   +      +  L++L+ D+LD++ ++ G +      + + +L
Sbjct: 292 LALVIQGVVDEATEQEQYLLSRAKDKTQSLIDLIGDLLDVSRIECGNVAQQQVPLQVEEL 351

Query: 651 LNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+ +   +  K    N  + V      L     D   L  +F  +++NA++++ +G +V 
Sbjct: 352 LSSIVDFMQAKAKAKNQELGVTLPASPLPKMRVDPMALESVFGNLVANAINYTPEGGSVT 411

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINL 767
           ++   D      +V + G  I E    ++F++F    N       G GLGLSIV+  ++ 
Sbjct: 412 VEVGGDEKAIQVTVADTGFGIEEKHLANIFDKFYRVKNDKTRFITGTGLGLSIVKGILDS 471

Query: 768 HGGHVSISSSDEGVTTINCRIPSKE 792
            G  +S+ S     +     +P ++
Sbjct: 472 MGASISVESEVGKGSRFTVLLPLED 496



 Score = 37.6 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 5/46 (10%), Positives = 16/46 (34%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             +  + +    I+  L   + + +Q   +   N +F+    +   
Sbjct: 144 ADLGKEQSRVRTIIEALPNGMVVTNQEGQVVLMNPAFLRHLGLPPD 189


>gi|15597172|ref|NP_250666.1| ErcS' [Pseudomonas aeruginosa PAO1]
 gi|9947976|gb|AAG05364.1|AE004624_3 ErcS' [Pseudomonas aeruginosa PAO1]
          Length = 881

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 124/726 (17%), Positives = 244/726 (33%), Gaps = 83/726 (11%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG-----RVSGSCAFLRILSLDGIYSELA 179
           + L +   KL++  Q+     E+    + +  G      V       R  +L     EL 
Sbjct: 30  VALEEERHKLQRINQALIGRIESSAAQSDEAYGAFQYSVVLAEQVRERTDALSQTMLELK 89

Query: 180 E----TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
                 +    +            +S+       D    I+  N  ++       I  + 
Sbjct: 90  ASNQLLSDARLRAETAHQHLLDAIESISDAFVLFDPQQRIVLFNERFR----ALWIDSRA 145

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAID 294
            IG   +  +     R       E+   +  +     + +  ++  R     G A +  D
Sbjct: 146 RIGPGMRRAELHRLARSGGLIVEEQRGGDQQTLYRLRDERWLRMSERPTRDGGLAVLYSD 205

Query: 295 VSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           V++         E  +  +       + NL+  +A+   +  L+  NR F+EL  +  A 
Sbjct: 206 VTEIKLSETARREQALAQKSHLLQRAVDNLSQGVAMVGADGVLELWNRRFLELCGL--AP 263

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +A + +  E++         P   +            + S        L +G+ L +   
Sbjct: 264 IAGHRAFAEVMAESELPLLTPRSQD-----------SQGSPLSAREQRLFDGRVLEIRTH 312

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P GG +  F ++T +           +      D +   +A    +   + +N  +  
Sbjct: 313 ALPTGGFVNTFTDITERYRHAEALRASERWIRLITDQVPALIAYLSDELVYEFTNKVYEE 372

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            ++     +  G  +R++         E       A    +F+    +L G    +  S 
Sbjct: 373 WYRWPSGSML-GRCLRDVHGAEHCRRLEPYFERALAGESVTFEIAETALSGEERYMQRSY 431

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------------- 565
           +         A   +   ++T+  R   AL +  + L +                     
Sbjct: 432 VPNRQADGRVAGLFVLIRDITERRRTAEALHQAYQNLEQRVRERTAELTTLNDQFKREIH 491

Query: 566 -------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                              +  K  F+  VS++L  PL     FT  L+    GS     
Sbjct: 492 ERSQVEARLREAKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALQER--GSATRDN 549

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  IS S   + NL+  ++D++ +DAG++  + +   L +LL  +            
Sbjct: 550 EALVNNISHSLEDVENLLGTLVDISKLDAGVITPDIAPFELGELLGNLAAEYRQVAASEG 609

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+  ++ G L    +D+Q L +I   +LSNA+ ++ +G  V+L   R        V + 
Sbjct: 610 LRLDFVACGAL--VRSDQQLLARILRNLLSNAIRYTPRG-RVLLGCRRHRQRLSIEVWDT 666

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F     +   Q RG+GLGL+IV+    + G  V + S     +  
Sbjct: 667 GVGIAADKLGEIFQEFKRGESQRCHQDRGLGLGLAIVDKIARMLGHRVRVGSLPGKGSCF 726

Query: 785 NCRIPS 790
              +P 
Sbjct: 727 AIEVPL 732


>gi|298506815|gb|ADI85538.1| sensor histidine kinase, PAS, PAS and PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 747

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 106/673 (15%), Positives = 224/673 (33%), Gaps = 68/673 (10%)

Query: 153 IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA 212
           ++     +     L           LAE   K ++       F+   D    L+   D +
Sbjct: 95  VEAAFLPALGQVILTFRDSAIFSRVLAELRQKSEECDT---YFRNSLD----LLCVADNS 147

Query: 213 GDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV------ 266
           G     N +++   E  G    + +G           +     +  +      V      
Sbjct: 148 GYFRRLNPAWE---EVLGFPLHELLGRKFIDLVHPDDREATMGAMSDLAHQRQVKDFTNR 204

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIA-- 320
             +  G+ +  +            +A DV+  I   ++L  + E    +   +    A  
Sbjct: 205 YRVRDGSYRWLEWRAAPAGDLVFAVARDVTDRILAQERLCRSEERYRLLFEEMMSGCALH 264

Query: 321 --IFDQNR-----YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKT 373
             I D++           N +F  +  +  A +        +LE +            + 
Sbjct: 265 ELICDRDGNPADYRFLAVNGAFERMTGLRAADIVGK----TVLEVM--------PGTERH 312

Query: 374 WKENIFSVYKSSETHK-DTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL 432
           W E    V  S  + + + +    G+   V      RG    +F ++T +  +E +    
Sbjct: 313 WIERYGDVALSGRSAEFEEYAGAIGRYYSVRAYCPERGKFAAVFNDITERRLMEDELRRQ 372

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR-----NIAATC 487
            +     +D++ + +A F  + R    + A   +           T+        +    
Sbjct: 373 EQSHRLVLDNIPDIIARFDRELRHLYVSAAITRVTGFPPEHFIGRTNREIGMPDELVDRW 432

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----------VLEYSIIPLPNAQ 537
               NE         +  ++   R        L+ +           V+ + I  L NA+
Sbjct: 433 DAAINEVFSSGREQRLEFTYQSPRGLRHFETTLIPERGADDSSAAVLVVNHDITELKNAE 492

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +  +N       ER + E+   L  ++   +SF   VS++LR+PL +I GF+ ++   
Sbjct: 493 LGMRQLNE----ELERRVGERTRELELSNRELDSFCSAVSHDLRAPLRHIAGFSRVVAED 548

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L+      +  I   +  +  L+N++L L+        L    + L+ +  +V   
Sbjct: 549 YGDRLDHGGRDLLTRIEGGAQRMDTLINELLSLSR--TNRSPLECHPVNLSTIAMDVVTD 606

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARD 715
           +     +  +  ++  D        D   +  + S +L NA  F+S  + + +       
Sbjct: 607 LREAAPDRLVDTEIAPD---VMAQCDGNLIRVVLSNLLGNAWKFTSRTERARIEFGVIPS 663

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                F V++NG+    +    +F  F     R    G G+GL+ V+  I+ HGG +   
Sbjct: 664 GDQQTFFVRDNGAGFDMNFADKLFVPFQRLHARDDYEGTGIGLATVQRIIHRHGGKIWAD 723

Query: 776 SSDEGVTTINCRI 788
           ++ +   T    +
Sbjct: 724 AAADRGATFWFTL 736


>gi|298530225|ref|ZP_07017627.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509599|gb|EFI33503.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 850

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 168/402 (41%), Gaps = 22/402 (5%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G  +W   +   +  +E +     ++    ++   + +  +         +P + ++   
Sbjct: 311 GYGVWFLRHRAKRKQVEKELQKTNEIFTLAMEATQDAIWDWDIRSGTTYFSPRWYTMLGY 370

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ---GTLELLSDSVL 526
           E   L             +         D F     +F  E +++     TL +L+   +
Sbjct: 371 EPYELPQNYDSFLAVIHPADKDEVKKQMDGFLRQSENFSIEYRAVSKNGETLWILTRGKV 430

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
             S       +   T V++T+    E+ L++  ++   A+  K+ F++++++ELR+PL  
Sbjct: 431 VQSDEQGRPLRMAGTNVDMTERKLMEQELSQAKKSAETANRAKDRFLENMNHELRTPLNG 490

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I+     L  S+   L   + +YVE    SS+ LL  +N IL+L+++   I +++    V
Sbjct: 491 IMSVLQTLADSE---LKPAEKEYVEMALNSSSQLLASLNKILELSSLQDDIQQVHPQPFV 547

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
           L++ ++++      +     I +++     +    V+D   L QI   ++ NA+ F+ +G
Sbjct: 548 LHEEMSKLVSFFQPQARNKQIGLELDIQEDVPSWLVSDVGMLRQIVWNLVDNAVKFTHEG 607

Query: 706 STVILKAARDNGD---------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---RRG 753
             V+  + + +            +F V++ G  IP +M K +F  FV   H  Q    +G
Sbjct: 608 KVVLRISKQSDSRQDSEATTVPLLFEVEDTGGGIPHEMQKDIFEPFVIGEHDIQFKRYQG 667

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI---PSKE 792
            G+GLS+    +   GG   + S     +T    +   P +E
Sbjct: 668 TGIGLSVCRQLVRSLGGETGVESRKGLGSTFYFILELEPGRE 709


>gi|168183622|ref|ZP_02618286.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237797003|ref|YP_002864555.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182673215|gb|EDT85176.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229262568|gb|ACQ53601.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 469

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +     KQ+ Y++    
Sbjct: 235 NSMAESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVP--EEKQNYYLKLTYE 292

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L  L+ND+LDL+ ++ G +KL+   I LN+++        TK+ +  +++ V  + 
Sbjct: 293 EIQRLTRLINDLLDLSAIEEGHLKLDLEEIDLNEIIRTSVIKFETKIRDKKLKVNVSLED 352

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  
Sbjct: 353 DKVYVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDI 412

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K +++RF         +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 413 KHIWDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|239909171|ref|YP_002955913.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239799038|dbj|BAH78027.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 840

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 168/387 (43%), Gaps = 34/387 (8%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +T +         L+++    ++    G+ V+  DG+    N +F  +          G 
Sbjct: 304 VTAR---TADLQGLLELNTAILEASPLGIGVYRRDGQCLSVNASFAHIV---------GG 351

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLP 534
               +               L   I+ + D+ R +     +++S       LE+ ++   
Sbjct: 352 DREAVQRQNFNQLESWRVSGLLPEILETLDNGR-TFHSEAQVVSTFGKPIWLEWRLVRFV 410

Query: 535 NAQTMLT---FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                       + T   +AE  L +       A   K++F+ ++S+ELR+PL  + G  
Sbjct: 411 RGGQNHALLLINDATVRKQAEDELRQAKHQAEAASRAKSAFLANMSHELRTPLGGVAGML 470

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL T+   +L+ +Q +YV     S+  L +L++DILDL+ ++AG + L  +     +L 
Sbjct: 471 ELLLTT---ALDGEQHEYVTAALKSTRRLSDLLSDILDLSRIEAGKLDLRLAPFETANLR 527

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             + +  A    E  + ++      L +   +D  RLLQI   ++ NA+ F+  G  V +
Sbjct: 528 AAILEVFALAAREKGLILEFTLHPGLPARIESDEARLLQILFNLVGNAVKFTGLG-FVRV 586

Query: 711 KA----ARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
                 AR +G    +FSV ++G  IP+     +F  F    H  Q+   GVGLGLSIV 
Sbjct: 587 DLWSLPARPDGRTPLVFSVADSGVGIPDGRLGEIFEPFAQGDHPRQQSRFGVGLGLSIVS 646

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIP 789
             I L GG +++ ++    TT+   +P
Sbjct: 647 RLIALLGGELAVDNAPG-GTTVYGCLP 672


>gi|171058148|ref|YP_001790497.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775593|gb|ACB33732.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1135

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 11/239 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             + +A   A+  K++F+ ++S+E+R+P+  IIG   L++ S    +  +Q+  +E + +
Sbjct: 639 RTQRDAAEGANRAKSAFLANMSHEIRTPMNAIIGLNYLVRRS---GVTPEQAARLEKVDS 695

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +   LL+++NDILDL+ ++AG ++L  +   L D+++ V+  IA    +  + I V  D 
Sbjct: 696 ACQHLLSIINDILDLSKIEAGRVQLECTHFRLGDIIDNVQSIIAEPARDKGLAIDVSGDA 755

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGD---FIFSVKNNGSSI 730
           +      D  RL Q      SNA+ F+ KGS + L+A   +D GD     FSVK+ G  I
Sbjct: 756 QALWLRGDPTRLRQALLNYASNAVKFTDKGS-ISLRAELLQDGGDELLLGFSVKDTGIGI 814

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             +    +F  F        R   G GLGL+I +  + L GG V + S+    +     
Sbjct: 815 EPEQIGRLFQAFEQADVSTTRKYGGTGLGLAITQRLVRLMGGEVGVDSTPGQGSHFWFT 873


>gi|153952802|ref|YP_001393567.1| sensory transduction histidine kinase [Clostridium kluyveri DSM
           555]
 gi|219853467|ref|YP_002470589.1| hypothetical protein CKR_0124 [Clostridium kluyveri NBRC 12016]
 gi|146345683|gb|EDK32219.1| Predicted sensory transduction histidine kinase [Clostridium
           kluyveri DSM 555]
 gi|219567191|dbj|BAH05175.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 471

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 139/323 (43%), Gaps = 3/323 (0%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
               +  +   T I  +     R Y       + A II S      S +  +  L     
Sbjct: 148 NGVFKGAILMHTSINELREPLKRVYEIIWISAILAIIICSVVIYYLSQRIIVYPLKKINY 207

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
               I     +  +   +  +     ++     ++L + ++ +  F+ +VS+E+RSPLT+
Sbjct: 208 VADKISKGEVEKRVCINSNDEIGELAKSFNSMADSLEQVEKNRRHFISNVSHEIRSPLTS 267

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I GF   +    +   + KQ+ Y+    +    L  LVND+LDL+ ++AG  KL    + 
Sbjct: 268 IKGFIGGMIDGIIP--HEKQNYYLSVTYSEIQRLTRLVNDLLDLSAIEAGQFKLRIEELD 325

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +N+++        TK++E  +++ V+ +       ADR R+ Q+ + ++ NA+ + + G 
Sbjct: 326 INEIIRLCIIKFQTKINEKKLKVDVVMENDKLYVAADRDRINQVVTNLIDNAVKYVNVGG 385

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFI 765
            + +           SV N+G  IPE   K +++RF  +      +   GLGLSIV S +
Sbjct: 386 NIKVSTKIKGEKAFISVYNDGEGIPESELKHIWDRFYKSDKSRTSKVSTGLGLSIVRSIL 445

Query: 766 NLHGGHVSISSSDEGVTTINCRI 788
              G  + + + + G       +
Sbjct: 446 TQLGEDIWVENRESGGIIFAFTL 468


>gi|121535650|ref|ZP_01667455.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121305754|gb|EAX46691.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 425

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 140/353 (39%), Gaps = 14/353 (3%)

Query: 447 VAVFGPDGRIKLSNPA----FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           + V    GR+  S P+       L        +   HI  + +   R  +    ++    
Sbjct: 74  ILVRDSQGRVTSSFPSEVAELERLAALASQVDAGKVHISEVDSHAYRLISLPYRYEENVL 133

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM--LTFVNVTDSVRAERALTEKNE 560
                    K +     + S+  L  ++  +  +  +  +  + +     A RA+     
Sbjct: 134 QTERGPIVVKDVIAVSIVDSEVALLRNLFMIIVSGLVIGMLIIIMAGYYLARRAMVPIQA 193

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A  K  +    FV   S+ELR+PL  I    +L+      ++  +  + V  I      +
Sbjct: 194 AWEKQQQ----FVADASHELRTPLAVIKSNAELMLRHPDHTIEDESIR-VTNIVREVRRM 248

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+L LA  DA   +L    + L++L++ V +            + V    +L   
Sbjct: 249 TRLVADLLTLARADANQSELQLGAVSLSELVDAVSEQFKPLAQLEGHTLTVAVYEQL-EL 307

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           V DR+RL Q+   +L NA+ ++     +++   R     + +V+++G  IP +    VF+
Sbjct: 308 VGDRERLYQLLVILLDNAVKYTPPPGHILITGVRQGSHILLTVEDSGQGIPPEDLPRVFD 367

Query: 741 RFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           RF         ++ G GLGL+I +  +  HGG + + S     T  +  +P K
Sbjct: 368 RFYRGDKARSREKGGTGLGLAIAKWIVEKHGGKIWVESKVGVGTKFSVLLPVK 420


>gi|42521079|ref|NP_966994.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410820|gb|AAS14928.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 475

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 158/379 (41%), Gaps = 25/379 (6%)

Query: 429 YNTLVKVQGETIDHLSE----GVAVFGPDGRIKLSN--------------PAFRSLWKTE 470
            N LVK++ E +  +S+     + ++  +GRI  SN                   L   +
Sbjct: 86  INQLVKLRAELLQSVSKVKDFSLILYDQNGRIIFSNFNTQDYDYEQLLTNDEIDKLLSNQ 145

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E   + G  + +I      ++  S     F  I+ ++++      G        +L   I
Sbjct: 146 EIFYTTGNTLTSIFPI---FHENSVKPSFFLKILRNYNNSYVIAYGLFLTFLGLLLIILI 202

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           + +       T + +    +    L +  E L + +  K  F   V++ELR+PL  IIGF
Sbjct: 203 LIMFYLHFSNTQM-LAKQHKTNIELQQIKETLEQENANKLKFFASVTHELRTPLNAIIGF 261

Query: 591 TDLLKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            +L+K   LGS+++ Q  +Y + I  + T LL L+ND+LD +  ++  + +      LN 
Sbjct: 262 AELIKNETLGSMDNSQYKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNK 321

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++     +  K+ E  I +K     K    +AD +R+ Q+   +LSN++ F+ K   + 
Sbjct: 322 IIDSCVNMLLPKLKEAGINLKKEMTNKQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIR 381

Query: 710 LKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           +      +         +NG  I +     V + F       +  G G+GL + +  + L
Sbjct: 382 MVIKENIEKNLLTIEFHDNGIGIMQQDIYKVMSVFGQADSGYRNEGTGIGLPLSKKLVEL 441

Query: 768 HGGHVSISSSDEGVTTINC 786
             G   I S  +  TTI  
Sbjct: 442 MDGTFDIKSEAKLGTTITL 460


>gi|317478901|ref|ZP_07938049.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904935|gb|EFV26741.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 294

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 127/239 (53%), Gaps = 5/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611
           + L   NE   +++++KN+F+ ++++E+R+PL  I+GFT +L    +  L+ +    +++
Sbjct: 50  KTLQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTMLAE--MDDLDRETRMAFLK 107

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +   LL LVND+LD + ++A  ++ N   + +N L++EV  +   + H   I+++ 
Sbjct: 108 EINDNKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEF 167

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        V DR R  Q+   ++ NA+ F+  GS  I      N +F F V + G  I 
Sbjct: 168 VERLPQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGID 227

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           E    ++F RFV   +    +G GLGLSI +S +  +GG + + S     +T    +P+
Sbjct: 228 EVGRHAIFERFVKMNY--NIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284


>gi|269137887|ref|YP_003294587.1| aerobic respiration control sensor protein ArcB [Edwardsiella tarda
           EIB202]
 gi|267983547|gb|ACY83376.1| aerobic respiration control sensor protein ArcB [Edwardsiella tarda
           EIB202]
 gi|304557940|gb|ADM40604.1| Aerobic respiration control sensor protein ArcB [Edwardsiella tarda
           FL6-60]
          Length = 778

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 144/372 (38%), Gaps = 18/372 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            QV+LE +      +    +D   + V     DG     N A   L    E +L   T  
Sbjct: 146 AQVELEQQ----SALLRSFLDSSPDLVYYRNEDGEFSGCNRAMELLTGKSEKQLIGLTPR 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D       +  +++       G       +  E   +P  +     
Sbjct: 202 DVYDPDIAQKVIETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKR 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++  
Sbjct: 257 HGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLDTE-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     L +++     
Sbjct: 313 -LNEEQLKYLKTIHVSAIALGNIFNDIIEMDKLERRKVQLDNQAIDFTGFLTDLENLSGL 371

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    +   +  D  L    +AD  RL QI   ++ NA+ F+ +G   +          
Sbjct: 372 LVQPKGLSFTLTPDPALPHKVMADGTRLRQILWNLIGNAVKFTQRGGVSVRVWREQQDKL 431

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           +F V++ G  IP +    +F  +         +   G G+GL++ +      GG + +SS
Sbjct: 432 LFEVRDTGIGIPPEEQDKIFAMYYQVKDMHGGKPATGTGIGLAVSKRLAQTMGGDIVVSS 491

Query: 777 SDEGVTTINCRI 788
                      I
Sbjct: 492 VAGEGACFTLSI 503



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 21/168 (12%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +I  RV    A  R+  LD +  E+ +  L   +L    ++ +   DS   LV++R++ G
Sbjct: 118 EIADRVKAEEA--RLQVLDTLQHEIDQRELAQVELEQQSALLRSFLDSSPDLVYYRNEDG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL--- 269
           +    N + +  T   G   ++ IG   R ++  +I +++I +   EK F   VS     
Sbjct: 176 EFSGCNRAMELLT---GKSEKQLIGLTPRDVYDPDIAQKVIETD--EKVFRHNVSLTYEQ 230

Query: 270 ----EHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
                 G    +++       RV    G  G   D+++     D L +
Sbjct: 231 WLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|289449713|ref|YP_003475160.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184260|gb|ADC90685.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 625

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 139/365 (38%), Gaps = 29/365 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           DLE + N L +     ++ L+EG+  +     +   NP FR  +   +N L  G+ I ++
Sbjct: 246 DLEAESNRLQQ----ILNGLNEGIIAYTAKLHLAHLNPVFREYFSECQN-LELGSSINDL 300

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                                   +D R+++   +   +   +  S+  L     +L   
Sbjct: 301 P----------------------VEDIREAINEAVATGTTQYITISVGELLLFGQLLLLH 338

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +   + +    L       ++ ++ +  +V +VS+EL++PLT I    + +    +   +
Sbjct: 339 SADKTFQGVVGLFRDVTKEQQLEQTRRDYVSNVSHELKTPLTAIRCMVEPIIDGLIKDPD 398

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  Y   I      +  L++D+L+L+ + +G   +      L  LL  +    ++   
Sbjct: 399 RLQRYY-HIIYDEVLRMARLIDDMLELSRLQSGKAVIELEPCQLQTLLENLYAKFSSVAK 457

Query: 664 ENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           E  I   +      L     +  R+ QI    L NA  F+  G  +IL+AA  +   I  
Sbjct: 458 EKQINFALELPNCNLPLAYVNPDRIEQIIYVFLDNASKFTPPGGDIILRAALKDDRIIIV 517

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V++ G  I  +    VF RF          G GLGLSIV+      G  V + S      
Sbjct: 518 VQDTGKGIAAEDKAHVFERFYKADKSHGSIGTGLGLSIVKEITEKTGEKVWVESELGHGA 577

Query: 783 TINCR 787
                
Sbjct: 578 AFYIS 582


>gi|160889895|ref|ZP_02070898.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492]
 gi|270294144|ref|ZP_06200346.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156860887|gb|EDO54318.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492]
 gi|270275611|gb|EFA21471.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 128/239 (53%), Gaps = 5/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ-YVE 611
           + L   NE   +++++KN+F+ ++++E+R+PL  I+GFT +L    + +L+ +    +++
Sbjct: 50  KTLQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTMLAE--MDNLDRETRMAFLK 107

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ +   LL LVND+LD + ++A  ++ N   + +N L++EV  +   + H   I+++ 
Sbjct: 108 EINDNKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEF 167

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +        V DR R  Q+   ++ NA+ F+  GS  I      N +F F V + G  I 
Sbjct: 168 VERLPQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGID 227

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           E    ++F RFV   +    +G GLGLSI +S +  +GG + + S     +T    +P+
Sbjct: 228 EVGRHAIFERFVKMNY--NIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLPA 284


>gi|153953733|ref|YP_001394498.1| sensor protein [Clostridium kluyveri DSM 555]
 gi|146346614|gb|EDK33150.1| Predicted sensor protein [Clostridium kluyveri DSM 555]
          Length = 652

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 171/416 (41%), Gaps = 52/416 (12%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +  ++T+++  E +  TL       +++  + +     +  I   N     L+  ++
Sbjct: 103 ILNLIRDITLELQREEEIETL----ASIVEYSEDAILSKDLNDIITSWNKGAEKLYGYKK 158

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           + +  GTHI  +    +   +     D     I  +  E   L  + + +   ++   I 
Sbjct: 159 DEI-IGTHISKLIPDET-IGDVEIILDKTKKGIEIYHHETTRLTKSGKKI---LVSICIS 213

Query: 532 PLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADE------------------- 567
           P+ N +  +        +++D    E+ L EK E L    E                   
Sbjct: 214 PIYNREKKIIGASAIARDISDKKSKEKQLKEKYEELSAIYEELASTEEELRSNYIELEKA 273

Query: 568 ---------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                     K +F+ ++S+E+R+PL  IIG  DL+    L  +      Y+E +  SST
Sbjct: 274 KIEAENANIAKANFLANMSHEIRTPLNGIIGTIDLIS---LMEIRECTRPYLEILRNSST 330

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL++ N+ILD++ +++G ++L+     L ++L+   + I+      NI+     D  + 
Sbjct: 331 HLLDITNNILDISKIESGKIELHMKVFDLKNMLDTFIREISYACSNKNIKFTYFIDPLIP 390

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPED 733
              + D  +L QI   + +N++ F+ KG  +     +    +     FS+++ G+ I E 
Sbjct: 391 SELIGDELKLKQILINLFNNSLKFTKKGHILFKVKKISQVNEKVILEFSIEDTGTGIKEK 450

Query: 734 MCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             K +F RFV             GLGL I +  + +  G +   S++   +T +  
Sbjct: 451 FKKQIFKRFVYQQVPQNEYYSTTGLGLLISKELVKIMNGDIWFESAENIGSTFSFT 506


>gi|330831032|ref|YP_004393984.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328806168|gb|AEB51367.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 770

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 167/444 (37%), Gaps = 24/444 (5%)

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
           +++ L  + +   ++  K        +  +++  ++   L       +  T+      + 
Sbjct: 76  VVDQLEDSRQRLSRMVRKLQDMRERDLELNTQLQENISRL----NAQIAETNRAESLRLQ 131

Query: 415 MFENLTVQVDLETKYN----TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
             E+L  +V    K          +    ID   + V     D +    N A   L    
Sbjct: 132 AIEDLENEVFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELTGKV 191

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           E  L   T         +    E+D     +    +++   +   G       +  E   
Sbjct: 192 EAELIGLTPFDVYKQEIANKVVETDKQVFASNEPLTYEQWLEYPDG-----RKAYFELRK 246

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +P  +       +        ER   +  + L KA   K +F+  +S+ELR+PL  I+G 
Sbjct: 247 VPFFDRFGKRLGLLGFGRDITER--KQYQDKLEKASRDKTTFISTISHELRTPLNGIVGL 304

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           + +L  +    L+  Q Q ++ I  S+  L N+ NDI+DL  +D   +++  + + L   
Sbjct: 305 SRMLMDT---PLDPSQRQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTRLDLPAF 361

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           L+E++     +  +  + +    DG +  FV AD  RL Q+   ++ NA+ F+ +G   +
Sbjct: 362 LDELETLSRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTV 421

Query: 710 LKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
              +    +       F V++ G  IP    + +F  +     +    G G+GL++    
Sbjct: 422 RCLSHPADEPGKLALHFEVEDTGIGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQL 481

Query: 765 INLHGGHVSISSSDEGVTTINCRI 788
           +   GG + + S     +     +
Sbjct: 482 VQAMGGRLYVDSDPGEGSCFTAEL 505



 Score = 47.6 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 77/202 (38%), Gaps = 19/202 (9%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQ---NDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
                +LS+   KL+   +  DL   TQ   N   +  +   +     LR+ +++ + +E
Sbjct: 81  EDSRQRLSRMVRKLQDMRER-DLELNTQLQENISRLNAQIAETNRAESLRLQAIEDLENE 139

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           + +       L    ++ +   D    LV++R++       N + ++ T   G V  + I
Sbjct: 140 VFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELT---GKVEAELI 196

Query: 238 G-ESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL------NS 285
           G     ++K+EI  +++ +        E ++         G    +++ +V         
Sbjct: 197 GLTPFDVYKQEIANKVVETDKQVFASNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKR 256

Query: 286 FGEAGIAIDVSKEITVNDQLTH 307
            G  G   D+++     D+L  
Sbjct: 257 LGLLGFGRDITERKQYQDKLEK 278


>gi|21107426|gb|AAM36144.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 468

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L ++ E LR   E+K+ F+ ++S+E R+PL +I+  T LL+    G LN++Q + V ++
Sbjct: 220 ELDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFV 279

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S S+  L  +V+D+LDLA ++AG + ++     L DL   ++          +  +    
Sbjct: 280 SGSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDMGSTTLIFED 339

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              L     D ++L QI    +SNA+ F+ +G   +      +    F V++ G  IP +
Sbjct: 340 PPVLPMLYTDDKKLAQILRNFISNALKFTPQGQVRVFAQLEGDSHVRFGVQDTGIGIPAE 399

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + +++F  FV      Q+R  G GLGLSI + F  L GG V I+S     +     +P
Sbjct: 400 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGINSVVGQGSEFYVVLP 457


>gi|52842360|ref|YP_096159.1| response regulator TutC [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|19880987|gb|AAM00615.1| response regulator TutC-like protein [Legionella pneumophila]
 gi|52629471|gb|AAU28212.1| response regulator TutC [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 816

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 6/256 (2%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  +    +   A + L E N+ L + D+IK  F  +VS+ELR+PL  I+   ++L   K
Sbjct: 165 IEIYQRAQEIQEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILDPLEMLLAEK 224

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S     +  I  ++ ILL  VND+L+++ +DAG M L+Y+ I L  L+ +     
Sbjct: 225 --KLPSFVQNTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQTIALF 282

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++ E  +   +    +L + + D  ++  +   ILSNA+ F+ + + V ++  + N +
Sbjct: 283 EAQIPERKLVFSMDLPDELQAQI-DPDKIQHVLINILSNAIKFTPQNAKVRIRLVQINPE 341

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
                +++NG  IP D+C+++F RF        R   G GLGLSI + F+ LHGG +   
Sbjct: 342 TCRLQIEDNGPGIPSDLCETIFERFFQIEESTTRTVGGTGLGLSIAKDFVELHGGSILAG 401

Query: 776 SSDEGVTTINCRIPSK 791
           ++  G       +P K
Sbjct: 402 NARNGGAIFTIELPLK 417



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 108/278 (38%), Gaps = 23/278 (8%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T  +L +   +Y I P    +      N+    +AE  L              + FV H 
Sbjct: 555 TARMLEEGAQDYVIKPFSAKEFKARVANLILVKKAEDEL--------------DQFVYHA 600

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S++L++PL  +      ++      L+ +  +Y+  +   ++ +  L++ +L  A   +G
Sbjct: 601 SHDLKAPLPAMEHLISWIEEDLGEMLSEQSKKYLLLLRQRASRMSKLLDGLLKYA--QSG 658

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            +     TI  + L+ ++ + +          +    +  L         L ++F+ +L 
Sbjct: 659 YVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLNTCELPLREVFTALLD 713

Query: 697 NAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           N++     K   +I+     +  + F V ++G  I +     +F  F +   R +    G
Sbjct: 714 NSIRHHHRKDGHIIIGTKEKDRFYEFFVADDGPGIEKKYQDRIFQLFQTLQPRDKLETSG 773

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS-KE 792
           +GLSI +  +   GG +S+ S     +      P  KE
Sbjct: 774 VGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWPKDKE 811


>gi|329851511|ref|ZP_08266268.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328840357|gb|EGF89929.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 809

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 174/435 (40%), Gaps = 32/435 (7%)

Query: 372 KTWKENIFSVY--KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           + W + + +V   K+ +       L   +    +V+S   G  + +  N   ++      
Sbjct: 228 RAWDQGLCAVVADKAEDYRAVIECLKGSEVTRGVVSSGHDGLKLMLLANAYAKIGDNRNA 287

Query: 430 NTLVKVQ---------GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
              +              T+     G  V   DGR +       +  +  E +L+     
Sbjct: 288 RAYLAKLQAVPPAVFPRSTLFDSYVGAYVKANDGRYQ------EAFHEMGEVQLAYRRKD 341

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-TM 539
                  +R  +  D +      + S   E + L   +++ +  +    +I +  A  ++
Sbjct: 342 EQ-----ARVASVQDMYKALRKELDSKTQESRLLVKQVQMRNLLLWAAGLIAILLAVISV 396

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            +   V    R  R L E +E    A+  K+ F+  +S+ELR+PL  ++G    LK    
Sbjct: 397 GSAFWVLRMRRLHRNLNEAHEHAEAANAAKSRFLAVMSHELRTPLNGMLGMAQTLKK--- 453

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G LN  Q + V+ +  S   LL L+ND+LD++ ++AG ++L  S   + D+++ V  +  
Sbjct: 454 GDLNGAQREQVDIMVDSGETLLALLNDVLDMSRIEAGKVELAPSPATMKDMVDRVVNTYH 513

Query: 660 TKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGST---VILKAARD 715
             +   ++ +    D      ++ D  R+ Q  S ++SNA+ F+  GS    V +    D
Sbjct: 514 PLLGAKDVVLSYHLDEGANRIMSFDVLRVYQCLSNLVSNAIKFTEMGSVRINVSVTEQSD 573

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
                  VK+ G  + + +   +F  +         +  G GLGLSI      L GG +S
Sbjct: 574 GCQVRCEVKDTGIGMSKAVIDKLFEAYSQADAMTVRKYGGSGLGLSISRRLAELMGGTLS 633

Query: 774 ISSSDEGVTTINCRI 788
           ++S +   +T     
Sbjct: 634 VTSDENKGSTFVLTF 648


>gi|308173326|ref|YP_003920031.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606190|emb|CBI42561.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 739

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 139/782 (17%), Positives = 295/782 (37%), Gaps = 80/782 (10%)

Query: 39  IPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIV------WDGKDET 92
           +   L ++ + SL +++         +   L +YH ++        +          +E 
Sbjct: 1   MAETLDLQTKESLKEQLKRMKEENDRLKSDLHRYHVIMNNTLDAIFICHKEMKIVQANEA 60

Query: 93  PEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCA 152
              + Q+     I ++  D L            +L+KA +K  K+G  +  V    +   
Sbjct: 61  AARMMQIEAESLINRSVLDFLY------SVPQEELNKAVKKFLKKGHLWKEVPIKLD--- 111

Query: 153 IKIEGRVSGSCAFLRILSLDG--------IYSELAETTLKCKKLSNHISVFKVLFDSLDF 204
                  SG+  ++  L+ DG        +  +++   +  ++ S +  +FK LFD    
Sbjct: 112 -------SGATKYIEFLAKDGIGEDYFFVVMRDISSKKILEREFSMNEQLFKDLFDRAVD 164

Query: 205 LVWHRDQAGDILWANISYKKNTET-EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC 263
            +   D+ G  + AN+S+ K+ E  +  +   ++    +    +  K +  +   +    
Sbjct: 165 GIVLFDKDGGFIDANLSFCKSFEIGQNELSHLSLRHFTEGENNKHLKEIWDTLGKKGKAK 224

Query: 264 ETVST-LEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQL----THTYEILHNLT 316
             +   L  G  K ++     N      ++I  D++++ ++  +L        EI  N  
Sbjct: 225 GELPVKLRSGEEKLFEFTITSNLISGFYMSIMRDITEKRSMELKLFKSEERFREIFENAM 284

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            AI I+  +  +   N S   ++E+ +  L        L  F+            K +K+
Sbjct: 285 DAIVIWSDDGRIAKANESACRIFELPMDKLVER----NLCSFIVD--------PQKKYKQ 332

Query: 377 NIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNP---RGGTIWMFENLTVQVDLETKYNTL 432
                 K  E  ++  + + NGQ   +  TS      G  + +  N++ +  +E +    
Sbjct: 333 IKKKYEKYGEIREEMLFQMANGQYKELEFTSKRTILEGQHLTILRNVSDRKRMEKELRES 392

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
                +  +   +G  +F    RI  +NP    +    +  L   T    +    S +  
Sbjct: 393 ELKFRKVFNGSMDGKVLFDNQFRIIDANPLASRILGMPDEELRAYT----VPDILSLFDI 448

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP-LPNAQTMLTFVNVTDSVRA 551
           E+ G       +   D+E   L   L       LE+S    +     +  F +VT++   
Sbjct: 449 ENAGVPARKIDLEGMDNEIPFL---LSSSDSRKLEFSFKRNIIQNMNLAIFKDVTEAKEL 505

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L + +                +++E+R+P+T + GF  LL+    GS+  + S Y  
Sbjct: 506 EERLRKSDTLHVVG-----ELAAGIAHEIRNPMTALKGFIQLLQ----GSIEGEHSLYFN 556

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I++    + +++ + L LA   A    + Y    +  ++ +    +  + +  N++I +
Sbjct: 557 VITSELKRIESIITEFLILAKPQA----ILYEEKDVTQIMKDTADLLNAQANLVNVQIHL 612

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSI 730
              G +     +  +L Q+F  IL NA++    G    +     D    + S+++ G+ +
Sbjct: 613 NLTGNIPPIYCEPNQLKQVFINILKNAIEVMPGGGNFYVTIQPSDKDHILISLQDEGTGM 672

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ED  K +   F       + RG GLGL +    I  H G + + S +   T  +  +P 
Sbjct: 673 SEDKLKRLGEPFY----TTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLPI 728

Query: 791 KE 792
           ++
Sbjct: 729 RQ 730


>gi|285265587|gb|ADC35361.1| histidine kinase protein [Alternaria alternata]
          Length = 1329

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 110/696 (15%), Positives = 247/696 (35%), Gaps = 102/696 (14%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLK 184
           ++L +    +  + QSF     T+    +  EG+  G  A      + G+     E T+ 
Sbjct: 342 LQLQQTINSMVDQLQSFATQV-TKVARDVGTEGK-LGGQA-----EIAGVKGMWNELTVN 394

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLF 244
              ++ +++        +   V      G++       +   + E +  +  I       
Sbjct: 395 VNAMAQNLTTQVRDIAQVTTAV----AQGNLT---RKVEAECKGEILELKNTINRMVDQL 447

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHG-NNKSYKIVRVLNSFGEAGIAIDVSKEITVND 303
           ++   +    +  +            HG       +   +N     G+A++++ ++    
Sbjct: 448 QQFAHEVTKIAREVGSEGRLGGQATVHGVEGTWKDLTENVN-----GMAMNLTTQVREIA 502

Query: 304 QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
           ++          T A+A  D +R ++          E+    L+   + + +++ L +  
Sbjct: 503 EV----------TTAVARGDLSRKVKA---------EVQGEILSLKITINTMVDRLNAFA 543

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
           +   ++  +   + I       +  +  W                        ++LT  V
Sbjct: 544 QEVSKVAREVGTDGILGGQAQVDNVEGKW------------------------KDLTNNV 579

Query: 424 DLETKYNTL-VKVQGETIDHLSEG----VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +   +  TL V+   E    +++G          +G I+L       +    +       
Sbjct: 580 NTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLDEWSLAVK 639

Query: 479 HIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            +        +   ++D  D+   +  I T  +   ++L   +    D     +   +  
Sbjct: 640 RVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----ITNAAMEG 695

Query: 536 AQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQHVSYELR 581
             T +T     +    +R + +                EA   A++ K+ F+ ++S+E+R
Sbjct: 696 KFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLANMSHEIR 755

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++A  M + 
Sbjct: 756 TPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIEANRMVME 812

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMD 700
                +   +    +S+A++ +E  + +      K+    V D  RL QI   ++ NA+ 
Sbjct: 813 EIPFSMRGTIFNALKSLASRANERKLNLAYDVSYKVPGYVVGDSFRLRQIILNLVGNAIK 872

Query: 701 FSSKGST---VIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-- 751
           F+  G     + +    +   D+  F F+V + G  I  D    +F+ F        R  
Sbjct: 873 FTELGEVKAAISMAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQADGSTTRKF 932

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            G GLGLSI +  + L GG + + S     +     
Sbjct: 933 GGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFYFT 968


>gi|270294109|ref|ZP_06200311.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275576|gb|EFA21436.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 758

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 144/330 (43%), Gaps = 13/330 (3%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SV 525
             ++   L      R +    + Y +  D       I    +      Q       +   
Sbjct: 432 CDSQFCELIHHCPGRLLLDEITPYIHPDDLPAFRKNIAARHERTHHKGQYRCNFTGEFQW 491

Query: 526 LEYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            E+S   +              N+ +    E+ L E  E L +  E+K SF+ ++S+E+R
Sbjct: 492 WEFSYNTIHTPGHAPIIAGLLQNIQELKDHEQELIESRE-LAEQAELKQSFLNNMSHEIR 550

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GF+D+L      S + ++ ++V+ I+ ++ +LL LV D+L+L+ +++G +   
Sbjct: 551 TPLNAIVGFSDMLANEPEFS-DEERQEFVDIINTNTKLLLKLVGDVLELSRIESGNLSFI 609

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +    +  LL++V Q+ +  +    ++       +      D  RL Q+ +  L+NA  F
Sbjct: 610 FQRESVRQLLDDVYQTHSLLIQP-PLQFLKDFPPEDVQVNVDPMRLTQVLTNFLNNANKF 668

Query: 702 SSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           + +GS + L     +G  +    V++ G  IP    K +F RF   +   Q  GVGLGLS
Sbjct: 669 TKEGS-IQLGYCCPSGMSEVHLYVEDTGIGIPHSEQKMIFERFYKRSEFSQ--GVGLGLS 725

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I    +   GG + + S +   +     +P
Sbjct: 726 ICVLIVEKMGGRIELQSEEGRGSRFTVVLP 755


>gi|148657916|ref|YP_001278121.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
 gi|148570026|gb|ABQ92171.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 392

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 136/382 (35%), Gaps = 46/382 (12%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           ++++   +         +GV +   D R++  N     L       LS    I     T 
Sbjct: 35  QHDSFSPLFHAAAHAFDDGVVLVDADRRVRYINRQAEELLN-----LSHTISIGQGLITL 89

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +R Y       +    I S +      Q    L     L    IPL +            
Sbjct: 90  ARDY---QVDAMVEEAIASAEPRESIFQ---PLGRQRTLRLRAIPLDDG----------- 132

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R    L      L   +  +   V +VS+ELR+PL ++    + L++           
Sbjct: 133 -ARGALLLVRDVTQLSLLERARRDLVANVSHELRTPLASMKLLVETLQS---DPPPPVAK 188

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + ++ I+     +  LV ++ +LA +++G + L      L  L+    + I  +M   ++
Sbjct: 189 RMLDQIAQEVDAITQLVEELHELAQIESGRVALQLVPAPLAPLVARTIERIRPQMDRKHL 248

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------- 714
           ++       L   + D  R+ Q+   +L NA  F+ +G  V + A               
Sbjct: 249 QMTTDVPDDLPQALIDCNRVGQVLLNLLHNASKFTPEGGCVSIAARVITVGDGSPPPPGL 308

Query: 715 -----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINL 767
                     + SV +NG  IP      +F RF        R   G GLGL+I +  +  
Sbjct: 309 PPSHAPGQWLLLSVTDNGIGIPATDLSRIFERFYKVDRARTRNAGGTGLGLAIAKHLVEG 368

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           HGG +  +S +   +T    +P
Sbjct: 369 HGGRIWATSIEGEGSTFYLTLP 390



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 17/120 (14%)

Query: 317 VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
             + + D +R +++ NR   EL  +                       +    +++    
Sbjct: 52  DGVVLVDADRRVRYINRQAEELLNLSHTISIGQ-------------GLITLARDYQV-DA 97

Query: 377 NIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNPRG--GTIWMFENLTVQVDLETKYNTLV 433
            +     S+E  +  +  L   +TL +       G  G + +  ++T    LE     LV
Sbjct: 98  MVEEAIASAEPRESIFQPLGRQRTLRLRAIPLDDGARGALLLVRDVTQLSLLERARRDLV 157


>gi|229057029|ref|ZP_04196423.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603]
 gi|228720306|gb|EEL71882.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603]
          Length = 466

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +      LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 LAMILITIWIGRKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   +  E N+RI    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLNTYELQFVEKNLRISTNLNPEII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +I+   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDREHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRIESEKGKGTTVSIKL 457


>gi|144900838|emb|CAM77702.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 806

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 119/282 (42%), Gaps = 17/282 (6%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYE 579
           +V+ Y +  L  +Q+          +  ER     L +  EA       K  F+  +S+E
Sbjct: 194 TVVAYVVGGLARSQSGRMQREEYLHIERERQTNHNLMQAKEAAEAGARAKADFLAVMSHE 253

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+P+  ++G   L+  S L   +      +E    S+  LL +++DILDL+ +++G  +
Sbjct: 254 IRTPMNGVLGMVRLVLESPLAEND---RSRLETACHSAEGLLTILDDILDLSKLESGSFR 310

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNA 698
            +++   L  LL  V   +  +  E  + + V     +  ++  D  RL QI   ++ NA
Sbjct: 311 FHHAPFQLRPLLAGVIALMDVRAAEKGLTLTVDVAPDIPDWLDGDGGRLRQILFNLIGNA 370

Query: 699 MDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRR 752
           + F+  G   I    RD+        FSV + G  I E     +F  F         Q  
Sbjct: 371 VKFTQAGGVTITACRRDDASDRVGVEFSVIDTGPGIAESQLSRLFQPFSQADASISRQFG 430

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI---PSK 791
           G GLGL I +  +   GG + + +     +    R+   P++
Sbjct: 431 GTGLGLVICKRLVEGLGGSIGVDTPPGKGSRFFFRLDFAPAR 472


>gi|119503084|ref|ZP_01625169.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
 gi|119461430|gb|EAW42520.1| Response regulator receiver [marine gamma proteobacterium HTCC2080]
          Length = 1448

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L E  +A   A+  K+ F+  +S+E+R+PL  IIG  +LL  +       +QS++     
Sbjct: 828  LEEAKQAAEAANVAKSEFLAVMSHEIRTPLHGIIGMNELLLKT---DTTPQQSRFARAAL 884

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S   LL+L+++ILDLA ++A  M +      L  +++EV            +++  I D
Sbjct: 885  NSGKTLLHLISEILDLAKIEADRMDIESVEFDLVSVIDEVCYLQGEPAQRKGLKLDFIPD 944

Query: 675  GKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPE 732
              L GS+  D Q++ QI + ++ NA+ F+  G  + +    D +GD    V + G  IP+
Sbjct: 945  AALAGSYRGDPQKIRQIITNLVGNAIKFTESG-RITVALGVDASGDVRMVVDDTGDGIPD 1003

Query: 733  DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIP 789
            D    VF +F        R   G GLGL+I  +F  + GG +SI + +    T +   IP
Sbjct: 1004 DARTRVFEKFTQADTSTTRQYGGTGLGLTICRNFAEVMGGSLSIETPTPGTGTRVIVAIP 1063

Query: 790  SK 791
             +
Sbjct: 1064 LE 1065


>gi|78049848|ref|YP_366023.1| two-component system sensor/regulator hybrid protein [Xanthomonas
            campestris pv. vesicatoria str. 85-10]
 gi|78038278|emb|CAJ26023.1| two-component system sensor/regulator hybrid protein [Xanthomonas
            campestris pv. vesicatoria str. 85-10]
          Length = 1149

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 167/404 (41%), Gaps = 21/404 (5%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD R+   N
Sbjct: 604  RLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWN 663

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              ++ L+   +  L  G  + ++    +      +G D+   I       R       E 
Sbjct: 664  RRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFER 722

Query: 521  L--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-----------DE 567
                  V+E     LP    + ++ ++TD  RAERAL + NE L +             +
Sbjct: 723  TRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSREAELAQQ 782

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K  F+  +S+++  PL     F   L+ S     N +Q    E + AS      L++ +
Sbjct: 783  SKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAAEELLDGL 840

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD++ +DAG ++        + L++E+    A       ++++V    +     +DR+ L
Sbjct: 841  LDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVAASRGLQLQVHV--RPIWVRSDRRLL 898

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
             ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F  F     
Sbjct: 899  RRVMQNFLANALRYTRQG-RIVLGMRGRGQQVELQVWDTGPGIPEHHMRQIFEEFRRYQQ 957

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 958  PFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1001



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 561 AHRAFVDQAVLLERELQPTVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 620

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 621 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 680

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 681 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 739

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 740 GGYVTSYNDITDYKRAERALLDANENLEQ 768


>gi|260223382|emb|CBA33893.1| hypothetical protein Csp_B21310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 769

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 19/257 (7%)

Query: 547 DSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +  R ER    +   NE    A+  K+ F+ ++S+ELR+PL  ++G   LL+++    +N
Sbjct: 179 ERQRLERMHEQMRVANEKADAANAGKSQFLANMSHELRTPLNGMLGMLSLLEST---PVN 235

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q  Y++  + S+  LL+L+NDILD + ++AG M L   ++ L  L+ +V+  +     
Sbjct: 236 AQQDDYIQTANRSAKHLLSLLNDILDASALEAGKMTLKPESVHLPSLVGDVQALMRPVAL 295

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
           E  + + V +D  L  +V AD  R+ QI   ++SNA+ FS  G TV ++     G+    
Sbjct: 296 EKRLVLSVKADKDLPRWVLADGTRVKQIMLNLVSNALKFSEHG-TVSVEVFSPAGEELKA 354

Query: 719 -----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
                    V + G  +  D+   +F RF        RR  G GLGL I  S     GG 
Sbjct: 355 GDDVALKIRVTDEGMGMSADVLAKLFQRFEQGNASSARRHGGTGLGLEISRSLARRMGGD 414

Query: 772 VSISSSDEGVTTINCRI 788
           + +SS +   +     +
Sbjct: 415 IEVSSVEGKGSVFTATL 431


>gi|229010689|ref|ZP_04167887.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048]
 gi|229132194|ref|ZP_04261051.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196]
 gi|229166233|ref|ZP_04293992.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621]
 gi|228617178|gb|EEK74244.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621]
 gi|228651242|gb|EEL07220.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196]
 gi|228750583|gb|EEM00411.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048]
          Length = 466

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +      LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 LAMILITIWIGRKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   +  E N+RI    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLNTYELQFVEKNLRISTNLNPEII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +I+   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDREHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRIESEKGKGTTVSIKL 457


>gi|258406426|ref|YP_003199168.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257798653|gb|ACV69590.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 479

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 143/324 (44%), Gaps = 19/324 (5%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R IA    +   +   +D    ++ S +D+ +     LE  ++ + + +       Q + 
Sbjct: 12  REIARLRKQQKQQERVYDQQCHLLKSVNDKYEQSLKELENANERLQQLATERAETLQALE 71

Query: 541 TFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                    +   +  +  L +  +   +A+E K++F+  +S+E+R+PL   +G   ++ 
Sbjct: 72  LTNKKLQLEIEQHLATQSELKKARDLAEEANEEKSAFLAAMSHEIRTPLHVALGMLGIVL 131

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L ++  + +     +S+ L  ++ DILD + +++G+++L  ++    ++   + 
Sbjct: 132 EE---DLPAEVQRKLRIAHDASSHLQGVIGDILDFSKIESGMLQLEETSFSFKEMARLIV 188

Query: 656 QSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           Q +  +  E  + +       L G    D  R+ QI   ++ NA+ F+  G  V L A  
Sbjct: 189 QCLEPRAAEKGVELSTEVAETLSGYQRGDPYRVRQILFNLVDNAIKFTESG-FVKLSAHL 247

Query: 715 DN-------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
           +          +   V+++G+ I  D  +++F RF+       RR  G GLGLSI  +  
Sbjct: 248 EPCGTATGTDMYAIEVQDSGAGIAPDKLQTIFERFIQLDQTQARRQSGSGLGLSICANLA 307

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
            + GG + +SS +   +  +  +P
Sbjct: 308 EMMGGTIRVSSQEGKGSLFSVHLP 331


>gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1197

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 21/287 (7%)

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           +   D  R  LQ  +EL      + +I                   R  +   ++ E L 
Sbjct: 497 LRQTDTPRHWLQSEIELAQAVASQAAIA--------------VQQSRLYQKTRQQAERLM 542

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + D  K  F Q+VS+E R+PLT +IG  +       G L  +QS      S      L L
Sbjct: 543 ELDRQKTEFFQNVSHEFRTPLTLMIGPLESAINQHQG-LPYEQSSIALRNSRRL---LRL 598

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           VN +LDL  +DAG M+ ++    L + ++++ ++      + NI +             D
Sbjct: 599 VNQLLDLQRLDAGRMQPSFRPCNLIEFIHQIVETFKPYCEKKNINLLSQV-IPCPEIYLD 657

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
            ++  ++   +LSNAM F++ G ++ +     +      + + G  I ++    +F RF 
Sbjct: 658 IEKFDKVLYNLLSNAMKFTNAGGSITIAVKSTDNKVCLKISDTGIGISKEQLPHLFERFR 717

Query: 744 SNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                      G GLGL++V+  + LHGG + +SS     TT    +
Sbjct: 718 QAEGSVNRSYEGSGLGLALVKELVELHGGEIDVSSEQGKGTTFTIHL 764


>gi|15924481|ref|NP_372015.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927072|ref|NP_374605.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus N315]
 gi|156979810|ref|YP_001442069.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|13701290|dbj|BAB42584.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247262|dbj|BAB57653.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721945|dbj|BAF78362.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|285817172|gb|ADC37659.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus 04-02981]
          Length = 588

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 229 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 286

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 287 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 339

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 340 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 373

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 374 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAVVLDESKRLNRLVNELLNVARMDAEG 432

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 433 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 491

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 492 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 551

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 552 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 588


>gi|225386428|ref|ZP_03756192.1| hypothetical protein CLOSTASPAR_00175 [Clostridium asparagiforme
           DSM 15981]
 gi|225047467|gb|EEG57713.1| hypothetical protein CLOSTASPAR_00175 [Clostridium asparagiforme
           DSM 15981]
          Length = 468

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 5/257 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N    +      +       L   ++ L K +E + +F+ +VS++ RSPLT+I G+ + +
Sbjct: 210 NLDYRIAVHTHDEMGYLANTLNYMSDELNKMEEYQKNFIANVSHDFRSPLTSIKGYLEAI 269

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +        +Y+  + + +  L  L   +L L ++D     L+ S   +N ++ + 
Sbjct: 270 LDGTIPP--EMYGKYLSRVISETERLHKLTESMLTLNSLDNRGY-LSRSNFDINRVIKDT 326

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             S        NI   +     +    AD  ++ Q+   ++ NA+ FS   ST+ ++A+ 
Sbjct: 327 AASFEGTCDNKNIVFDLTFSDNIQMVYADLGKIQQVLYNLIDNAIKFSHHNSTIYIQASS 386

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHV 772
                  SVK+ G  IP+D  K ++ RF          +RG GLGLSIV+  I  HG ++
Sbjct: 387 RYEKIFISVKDTGIGIPKDSLKKIWERFYKTDLSRGKDKRGTGLGLSIVKEIIQAHGENI 446

Query: 773 SISSSDEGVTTINCRIP 789
            + S++   T     +P
Sbjct: 447 DVVSTEGVGTEFIFSLP 463


>gi|218261732|ref|ZP_03476467.1| hypothetical protein PRABACTJOHN_02138 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223808|gb|EEC96458.1| hypothetical protein PRABACTJOHN_02138 [Parabacteroides johnsonii
           DSM 18315]
          Length = 769

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 141/327 (43%), Gaps = 20/327 (6%)

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM--- 539
           +    +  YN S        ++   ++E  +      +    VL  +   +     +   
Sbjct: 181 LERAANLRYNNSIITSRINQMLRDIEEEEMNASMERVVKKQEVLRETSYLIGGIAILSLI 240

Query: 540 -------LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                  L   +++ S    + L +  +        +   +  +S+++R+PL++IIG+ +
Sbjct: 241 IVVVFIILITRDISRSQYYRQQLEKAKQYAEDLLHSREKLMLTISHDIRAPLSSIIGYIE 300

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL   +    + +Q  Y+E ++ S+  +L+LVN +LD   +++G M++      +  L N
Sbjct: 301 LLLRRR---PDERQRYYLENMTGSADHILSLVNGLLDFHRLESGQMEIQNVPFSVRTLFN 357

Query: 653 EVKQSIATKMHENNIRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           E+  S         +   +    +G    +  D  RL Q+ S +LSNA+ F+ +G  V++
Sbjct: 358 EIYGSFRPIAEAKGLAFVLNMKEEGMDRIYSGDPIRLRQVVSNLLSNAVKFTHEGRIVLI 417

Query: 711 -----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
                + +  +     +V ++G  IPE+  + +F  F   +   +  G GLGLSI    I
Sbjct: 418 VKLNCQLSIVHPQLSITVSDSGVGIPEEEQEKIFGEFARLSGTEKEEGFGLGLSITRKLI 477

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            L GG +S+ S     +     +P +E
Sbjct: 478 ELMGGTLSLKSVPGKGSDFTIVLPLQE 504


>gi|163814661|ref|ZP_02206050.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759]
 gi|158450296|gb|EDP27291.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759]
          Length = 1297

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 150/352 (42%), Gaps = 23/352 (6%)

Query: 456  IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII----TSFDDER 511
            I   N  + S  +T + R S G     I       Y      + F  ++     S DD  
Sbjct: 798  ITRFNKEYMSNSRTYQWR-SDGISWEGIVHCADSDYERFAARNTFQMVLILDQESGDDPV 856

Query: 512  -----KSLQGTL-ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                 K   G +  ++ +     S+  +     +L     T       ++ +    +++ 
Sbjct: 857  YGEFAKGKTGVVYHMMDNGQYSGSLFFIGMDGGILRDDAETKMFEEMLSIIQNRINMQRH 916

Query: 566  D---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            D   + K+ F+  +S+E+R+P+  IIG T++           K+ + ++ I ++S  LL 
Sbjct: 917  DLSAQAKSDFLARMSHEIRTPMNGIIGMTEVALR--PDQTEDKRIECLKKIDSASGYLLG 974

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            ++ND+LD++ +++G MKL      + D++  +   +  KM+E +I            +  
Sbjct: 975  ILNDVLDMSKIESGKMKLVIDKCSIPDMMKNIDSIMDAKMNEKDITFVQNITLLHDWYYG 1034

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKS 737
            D  RL QI   +LSNA+ +S+ G  V L          + D  F+VK+NG  IPE   + 
Sbjct: 1035 DELRLNQILVNLLSNAVKYSNLGGHVDLTVKELPVDEKHSDIYFAVKDNGIGIPESKQQL 1094

Query: 738  VFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +F RF          ++G GLGL+I    +++    + ++S     +  +  
Sbjct: 1095 IFQRFEQADDSANARKQGTGLGLAISSRLVHMMDSDIKVASEVGKGSCFSFT 1146


>gi|118476336|ref|YP_893487.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118415561|gb|ABK83980.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 463

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/437 (19%), Positives = 161/437 (36%), Gaps = 39/437 (8%)

Query: 375 KENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            E + ++ K   +H+D      + QT+  +        T  +  N     D+  K N + 
Sbjct: 37  NEEMTALLKRGNSHRDVLEKYFDKQTISHVALMESEAETTVVITN--ANKDVLAKSNEIN 94

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH------------IR 481
            +  + I+ +         DG I  ++    +   T    +  G H            I 
Sbjct: 95  TIIKKHIEKMQ---TRTDHDGAIIENHWKTSNYICTVSPIVVDGKHEGYVYMFLGTESIE 151

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERK------SLQGTLELLSDSVLEYSIIPLPN 535
            +    +R +  +         IT F   R        ++   E +S   L  S+     
Sbjct: 152 KMVNGLTRQFIIAGVITFLLTAITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSL----- 206

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+  
Sbjct: 207 -----TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL 261

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                    ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + 
Sbjct: 262 KETTSP--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIS 319

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +     E  I +       L     D QR  Q+   IL+NA   S + S + +    +
Sbjct: 320 EKVNAMYKERYITVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSQIHISVIEE 378

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
           N     ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG ++
Sbjct: 379 NKRISITMEDEGQGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGTIT 438

Query: 774 ISSSDEGVTTINCRIPS 790
           ++S  +  +     +PS
Sbjct: 439 VTSEVDHGSCFTISLPS 455


>gi|315649484|ref|ZP_07902569.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315274957|gb|EFU38332.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 1219

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 167/380 (43%), Gaps = 22/380 (5%)

Query: 427 TKYNTLVKVQGETIDHLSE--GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
             +     +Q + I  LS+  G+ +    GR+++     + L +++            + 
Sbjct: 404 AAFEETTSLQEQLISQLSQSLGIILNNITGRLRVE----QLLRESQAMTEELQVQSEELQ 459

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
                    ++  +     +   +D  +  Q  LE  +  +   +       Q       
Sbjct: 460 TQQEELRRSNENLEEQTNALKRSEDLLQRQQEELEHYNTEL--VAKTRALEEQVQEVEEK 517

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  +A   L ++ + L    + K+ F+ ++S+ELR+PL +++  + LL  +K G+L+ 
Sbjct: 518 NDEIEKARLKLEQQAKQLSVTTKYKSEFMANMSHELRTPLNSLLILSQLLSENKSGNLSD 577

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           KQ +Y + I  S + LL ++++ILDL+ VDAG M++NY  + L D+ + V+Q+ A     
Sbjct: 578 KQIEYAQTIYMSGSDLLKMIDEILDLSKVDAGKMEINYEDVQLQDIESFVEQNFAAVASR 637

Query: 665 NNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKA 712
            +I + V     +  S V D  R+ Q+   +LSNA  F+++GS  +           +  
Sbjct: 638 KHIDLHVHIGEDIPQSIVTDSHRVKQVLRNLLSNAFKFTNQGSVELHVEKADSEKLPIYL 697

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGG 770
             +     F+VK++G  IP D    +F  F         +  G GLGLSI      L GG
Sbjct: 698 NAEADYVAFAVKDSGIGIPADKTDLIFEAFQQVDGTTSRKYGGTGLGLSISRELSRLLGG 757

Query: 771 HVSISSSDEGVTTINCRIPS 790
            + + S +   +     +PS
Sbjct: 758 GILVESEEGKGSCFTLFLPS 777


>gi|307943284|ref|ZP_07658629.1| sensory box histidine kinase/response regulator [Roseibium sp.
           TrichSKD4]
 gi|307774080|gb|EFO33296.1| sensory box histidine kinase/response regulator [Roseibium sp.
           TrichSKD4]
          Length = 805

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 149/374 (39%), Gaps = 17/374 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +                   ++ + EG+ +    G ++  N   + +++     +     
Sbjct: 281 SAIRKRAQDLLEAEAQSSTILEKVIEGIILIDDKGVVEKYNAGSQKIFEYTPEEVIGKNV 340

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-NAQT 538
              +    +  ++          ++  F   R+  +   +  ++  +E S+  L  N Q 
Sbjct: 341 AMLMPTELADVHDSFVHRANTNDVMPEFHSFRE-FEALDKYGNEVAIELSVNSLQINGQR 399

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               V    S R E             D ++N F+  VS+ELR+PLT+I G   L  T  
Sbjct: 400 KYIGVVRDVSHRQE------------IDRMRNEFIYTVSHELRTPLTSIRGSLALANTLA 447

Query: 599 LG-SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            G  +  K S+ ++    +S  L  LVNDILDL  + +G    + S + LN+ + E    
Sbjct: 448 AGTEIPEKVSKMMDLALKNSERLNLLVNDILDLEKLRSGKTTFDLSEVDLNEAVEESVAL 507

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                 E N+++K     +      D+ RL Q+ S ++SNA  FS +  TV ++   +  
Sbjct: 508 NQHYALERNVKLKATPLEQPVVVKVDKARLQQVLSNLISNAAKFSHENGTVDVRVGLEGE 567

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
                V + G  IP++    +F+ F         ++ G GLGL+I +  +    G ++ +
Sbjct: 568 AAKLYVIDAGMGIPDEFKAYIFDPFSQADGSERRKKGGTGLGLNITKRLVEGIDGGINFT 627

Query: 776 SSDEGVTTINCRIP 789
           S +   TT     P
Sbjct: 628 SEEGVGTTFVIEFP 641


>gi|298675068|ref|YP_003726818.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288056|gb|ADI74022.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 797

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 120/641 (18%), Positives = 239/641 (37%), Gaps = 44/641 (6%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +  +        +    L       + L ++L   V+  D  G+I+  N       +
Sbjct: 178 LQMVSDVIGTELGKKIADNALEQSEKRHRSLIENLPLGVFSTDSNGEIIQCNKY---LID 234

Query: 228 TEGIVFQKAIGESR--KLFKEEIKKRMISSSALEKNFCE-TVSTLEHGNN---KSYKIVR 281
                 +K IG +        EIK  + ++      F E    T+  G N   ++Y    
Sbjct: 235 ITKSSKEKIIGLNIFNLPVNSEIKNCIRNALDGYTQFYEGEYKTVLTGKNLKIRAYFTPD 294

Query: 282 VLNSF---GEAGIAIDVS-KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
                   G  G   D++ K    +D+     +++ N+   I  F   R     N+    
Sbjct: 295 TSEDGKIVGCIGTITDLTGKTDEQDDKTRKMEKVIDNIDTHIWYFADRRTYGLVNKPHAN 354

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
            +      L  N   D  L+      K      ++          KS     +     NG
Sbjct: 355 FFGFRKEDLEYNDIYDVHLKQTAYLIKGLSDYVFEN---------KSRLQTTEKLINKNG 405

Query: 398 QTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
           +  ++ +T  P           I   E++T     + +            + L + V V 
Sbjct: 406 ELRNLSITLTPEFDYNGDVDYVICSGEDITEHEKSKKRIEESEIRYRTLFEDLIDAVLVQ 465

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
             DG     N          +  +    + ++I A        +   DL+      F+ +
Sbjct: 466 DLDGNFLDVNLTACEFLGYSKADILKMGY-KDIDALEQVGNLNAFENDLYRHGRAVFETK 524

Query: 511 RKSLQGTL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI 568
                G+     ++   ++Y   P      +L   ++T    AE  L E  + L  ++++
Sbjct: 525 YIKNDGSTISVEVNSRFIQYQGKP----AILLVARDITGRKNAEEKLQEYADKLEHSNKL 580

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F   + ++L +P   + GFT LL + +    +  +   +  I AS+  L+ L+ +  
Sbjct: 581 KDMFTDILRHDLLNPAGVVKGFTQLLISMEN---DDYKLDVLNKIKASNEKLIELIQNAS 637

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
             A +DA +  L +    ++ +L  V      +  + NI I+ +++G+  + + +   + 
Sbjct: 638 YFAKLDA-MEDLEFEKQDISAILKSVVSDFEQQAKDKNIDIEFLAEGEYPAII-NPV-ME 694

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q+F+ +LSNA+ +S + S VI+        +  S  + G  IP++  +++F RF     +
Sbjct: 695 QVFANLLSNAVKYSPENSRVIIDIDDIGKFWKVSFTDFGEGIPDEDKETIFTRFQRLE-K 753

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788
              +G GLGL+IV+  I LH G V +  + EG  +     +
Sbjct: 754 DSVKGSGLGLAIVKQIIELHDGEVGVDDNPEGRGSVFWVTL 794


>gi|265763669|ref|ZP_06092237.1| two-component system histidine kinase [Bacteroides sp. 2_1_16]
 gi|263256277|gb|EEZ27623.1| two-component system histidine kinase [Bacteroides sp. 2_1_16]
          Length = 511

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 96/499 (19%), Positives = 192/499 (38%), Gaps = 37/499 (7%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL----RSA 362
           ++  IL  +   +  F+  + +   N    E  +I        PS  ++ + +    +  
Sbjct: 30  YSARILETMQTGVVFFNTEQIISGINNLACEDLQIPRD-----PSGHKITDIISIIHQEK 84

Query: 363 NKLPEQLNWKTWKENIFS------VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +  PE +      E          + +S ET    +   +G  + +       G  +  F
Sbjct: 85  DIFPELIARLKSSETDMEKLPIDTLIRSLETKVQFF--ASGCIMQLET-----GRYLLAF 137

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRL 474
            N   +V  E   + ++                F       L +  + S       +  +
Sbjct: 138 RNTMDEVTHEHLLSMILARTKIFP-------WFFDLKRNKMLIDAHWFSYLGIPAGDCEI 190

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSII-P 532
           +       +         ++    L    I  SF    +   G+ E  S+  +  S    
Sbjct: 191 TIEKFFSRVHPNERDMLADALQKQLSEKEIPDSFSYRLQRGDGSWEWFSEQSMYLSKTND 250

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + +    ++ +    E  L       +++D +K++F+ ++S+E+R+PL  I+GF++
Sbjct: 251 GSPYRIVGVCHSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSN 310

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+    +     +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL 
Sbjct: 311 LIAGGIVDLDTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLT 370

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E+ Q    ++ +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A
Sbjct: 371 EIYQKYENRIPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYA 429

Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             D+G+     V + G  IP D  K VF RF         +G GLGLS+ ++ +   GG 
Sbjct: 430 LSDHGEKIYVFVADTGCGIPSDQYKKVFERFYKINSF--VQGAGLGLSVCKTIVEGLGGT 487

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++ S  +  +  +  +P 
Sbjct: 488 INVYSQLKEGSRFSVILPL 506


>gi|238917774|ref|YP_002931291.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Eubacterium eligens ATCC 27750]
 gi|238873134|gb|ACR72844.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Eubacterium eligens ATCC 27750]
          Length = 475

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 120/279 (43%), Gaps = 14/279 (5%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           K +           L Y I P+ N           +  R   +L      L ++D+ +  
Sbjct: 205 KEITKATTEYGKGNLSYHIKPMLN----------DEIGRLGMSLDYMASQLNESDKFQQK 254

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ ++S++ RSPLT+I G+ + ++   +        +Y+  +   +  L  L ++IL L 
Sbjct: 255 FLSNISHDFRSPLTSIKGYLEAIQDGTIPP--EMLDKYIGIMLFETERLTKLTSNILTLN 312

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            +D   + L+ S   LN ++    ++      +  I+  +     + +  AD+ R+ Q+ 
Sbjct: 313 ELDPKSVCLDISVFDLNSIIRHTVETFEGTCKKKGIKFNITYANSIQNVKADKGRIQQVI 372

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             ++ NA+ FS  GS + +           S+K+ G  I ++    +++RF  +     R
Sbjct: 373 YNLIDNAIKFSKDGSYIYITVKEKGEKAQISIKDTGCGISKEDIDKIWDRFYKSDSSRGR 432

Query: 752 --RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +G GLGLSI +  I  HG ++ + S+    T     +
Sbjct: 433 DKKGSGLGLSITKEVIQAHGENIDVVSTLGVGTEFIFTL 471


>gi|284037395|ref|YP_003387325.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283816688|gb|ADB38526.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 784

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A+  K+ F+ ++S+ELR+PL  I+G+T L K  +  +L+  Q + V+ I
Sbjct: 298 QLARAKEEAELANRAKSEFLANMSHELRTPLNGILGYTQLFKRDE--ALSPNQLKGVDII 355

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  LL L+ND+LDLA ++A  + +  +   L  L  ++   I  +  +  +R     
Sbjct: 356 HNCAENLLVLINDVLDLAKIEAQKLDVQTAPFHLTALFQDLIHLIGVRAEQKGLRFLADL 415

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNG 727
              L    + D ++L Q+   +L NA+ F+  G  V L+  R +         F V++ G
Sbjct: 416 APDLPAWVMGDERKLRQVLLNLLGNAVKFTETGG-VTLRVERASTKAQPYRLRFVVEDTG 474

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             I  D    +F  F      GQ   G GLGLSI +  + L GG + +SS+ +  T    
Sbjct: 475 IGIASDHLAGIFKPFQQVRETGQFIEGTGLGLSITDQLVQLLGGDLRVSSAIDEGTQFRL 534

Query: 787 RI 788
            +
Sbjct: 535 LL 536


>gi|194291558|ref|YP_002007465.1| chemotaxis methyltransferase protein; contains methylesterase domain
            (cheb), methylase of chemotaxis methyl-accepting proteins
            domain (cher), signal transduction histidine domain
            (nitrb), signal receiver (rec) domain [Cupriavidus
            taiwanensis LMG 19424]
 gi|193225462|emb|CAQ71408.1| Putative chemotaxis methyltransferase protein; contains
            Methylesterase domain (CheB), Methylase of chemotaxis
            methyl-accepting proteins domain (CheR), signal
            transduction histidine domain (NitrB), signal receiver
            (Rec) domain [Cupriavidus taiwanensis LMG 19424]
          Length = 1373

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/514 (16%), Positives = 199/514 (38%), Gaps = 28/514 (5%)

Query: 296  SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            ++  +  ++     + L NL     +     D++  ++ +    ++++ I  + +     
Sbjct: 727  AELKSKVEETGKINDDLQNLITANDIGTVFVDRSMCIKRYTPRAIDVFSIIPSDIG---- 782

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
               LL+            +     +++  + +   ++   W+L   + L    T +   G
Sbjct: 783  -RSLLDITHRLEYDKLADDAAEAFDSLRLIEREVRSNDGRWYLA--RFLPYRTTEDRIDG 839

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTE 470
             +  F ++T +   E +     K      +   +  +  F   GR+   N     ++   
Sbjct: 840  AVLSFIDITSRRAAEERLREGEKRMNIVAESTRDYAIITFDDQGRVTSWNTGAERIFGVG 899

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ---------GTLELL 521
            E  +  G     +     R           A +    +++R  ++         G L  L
Sbjct: 900  EADML-GQPAETLYTPEDRAAGVPKEELAQARMYGRIEEDRWHVRRDGSRFRSTGVLSRL 958

Query: 522  S-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT--EKNEALR-KADEIKNSFVQHVS 577
                V  ++ I     +  LT +    +  +E A T    NE+L  +A+ +++ F+  VS
Sbjct: 959  DKGGVSGFAKILRDLDELALTRIATRPASGSEVAGTRGPGNESLEGRAERLRDEFLAVVS 1018

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            +EL+ PL  I    +L+  +     +    +    I  +     ++++D+LD++ +  G 
Sbjct: 1019 HELKHPLNLISASAELISRAPDARASDVIQRAAATIRRTVMGQAHIIDDLLDMSRLRTGK 1078

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            + + ++ +   ++++ V  +I  ++    I ++           AD  R+ QI   ++SN
Sbjct: 1079 LSIAHAPLDWAEVVDRVCSAIEEEVARKQIVLERSLPDGPVMIDADLTRIEQIVWNLVSN 1138

Query: 698  AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGL 756
            A+ ++S G  + +   R +G  + +V++ G+ I       +F+ F   A    R  G+G+
Sbjct: 1139 AIKYTSAGGLINVSLTRTDGTAVLAVRDTGAGIDAQSLPHIFDMFRQGAAPTARKGGLGI 1198

Query: 757  GLSIVESFINLHGGHVSISSSD-EGVTTINCRIP 789
            GLS+V   + + GG V   S             P
Sbjct: 1199 GLSLVRELVTIQGGTVRAESEGQGKGALFTVSFP 1232



 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 81/279 (29%), Gaps = 31/279 (11%)

Query: 293  IDVSKEITVNDQLTHTYEILHNLTV-----AIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
            ID++      ++L    + ++ +       AI  FD    +   N     ++ +  A + 
Sbjct: 845  IDITSRRAAEERLREGEKRMNIVAESTRDYAIITFDDQGRVTSWNTGAERIFGVGEADML 904

Query: 348  TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLHVIVT- 405
              P+              PE       KE +          +D WH   +G         
Sbjct: 905  GQPA---------ETLYTPEDRAAGVPKEELAQARMYGRIEEDRWHVRRDGSRFRSTGVL 955

Query: 406  SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
            S    G +  F  +   +D E     +        +     VA     G   L   A R 
Sbjct: 956  SRLDKGGVSGFAKILRDLD-ELALTRIATRPASGSE-----VAGTRGPGNESLEGRAERL 1009

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-- 523
              +          H  N+ +  +   + +        I  +    R+++ G   ++ D  
Sbjct: 1010 RDEFLAVVSHELKHPLNLISASAELISRAPDARASDVIQRAAATIRRTVMGQAHIIDDLL 1069

Query: 524  -------SVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
                     L  +  PL  A+ +    +  +   A + +
Sbjct: 1070 DMSRLRTGKLSIAHAPLDWAEVVDRVCSAIEEEVARKQI 1108


>gi|84385456|ref|ZP_00988487.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
 gi|84379436|gb|EAP96288.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
          Length = 574

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A++ K+ F+  +S+ELR+PL  IIG  D LK++    LN +Q   +  +
Sbjct: 195 ELVTARKDAERANKAKSEFLAMMSHELRTPLNAIIGLIDTLKST---PLNDEQQSILLNM 251

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S SS +LL +++D+LD + +++G   L      + D +  V         +  + + V S
Sbjct: 252 STSSELLLAIISDVLDFSKIESGCFSLAPQWSNVRDTVTFVLSEQKKTADDKGLALTVTS 311

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D   G     D  RL QI   ++ NA+ F+ +G  V +        F  +V++ G  I  
Sbjct: 312 DIPEGELHYIDPSRLAQILFNLIGNAIKFTERGH-VHVSIKYLQSSFYITVEDTGIGISS 370

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               S+F+ FV       RR  G GLGL+I +  + L  G +S+ S     +    ++P
Sbjct: 371 QQLSSLFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGRISVESEPGKGSKFEVQLP 429


>gi|284929382|ref|YP_003421904.1| multi-sensor signal transduction histidine kinase [cyanobacterium
           UCYN-A]
 gi|284809826|gb|ADB95523.1| multi-sensor signal transduction histidine kinase [cyanobacterium
           UCYN-A]
          Length = 652

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 161/399 (40%), Gaps = 30/399 (7%)

Query: 410 GGTIWMFENLTVQVDL-ETKYNTLVKVQGETIDHLS----EGVAVFGPDGRIKLSNPAFR 464
           G  I+ F  +  +++  E      +  +   +D L     +G  +   +  + L NP  R
Sbjct: 236 GELIFNFNEMAKRLESHEEHNIEELTAEKAKLDTLVSTTIDGAILLDINLNLLLVNPTAR 295

Query: 465 SLWKTEENRLSPGTHIRNIAA--TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            ++   +  L     ++ +    T        +          ++ + R S +     L 
Sbjct: 296 RMFNWNKINLIGENVLKLLPKELTNQLQLPLQEMMRKRHHANNTYVEPRISPEEYRIKLQ 355

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHVSYE 579
             +L+   I L           V D  R  + +    + + +    +E K+ F+ +VS+E
Sbjct: 356 QPILKIVRILL---------TPVFDQHRDLKGIAMTIQDITREVGLNEAKSQFISNVSHE 406

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL NI  F + L        ++++ +++E  +  +  L  LVND+LDL+ +++    
Sbjct: 407 LRTPLFNIKSFIETLAEFGQDLTDAERKEFLETANHETDRLTRLVNDVLDLSRLESFK-T 465

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
              S + L+ L+ +  ++      +  + +       L   +     LLQ+ + ++ NA+
Sbjct: 466 YYLSAVDLSQLIEQTIRTYRLNAKDKELTLYKEVKSDLPLVLGHYDLLLQVINNLVGNAL 525

Query: 700 DFSSKGSTVILKAAR---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
            F+  G T++++A           +       V + G  I  +   ++F+RF    +R  
Sbjct: 526 KFTPSGGTIVVRAYYFKVKSKQSNNKSFVRIEVSDTGIGIAPEDQTAIFDRFFRVENRVH 585

Query: 751 R-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              G GLGLSIV + IN H    ++ S     TT    +
Sbjct: 586 TLEGTGLGLSIVTNIINKHHSQTNLISEIGVGTTFWFDL 624


>gi|229011293|ref|ZP_04168485.1| hypothetical protein bmyco0001_17440 [Bacillus mycoides DSM 2048]
 gi|228749949|gb|EEL99782.1| hypothetical protein bmyco0001_17440 [Bacillus mycoides DSM 2048]
          Length = 351

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPV--EKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++       +T  L+  L ++  +      E  + + + 
Sbjct: 170 IETETTRLSKLSQNLLKLTILESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLD 229

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D       AD++ + Q++  ++ N++ F+  G T+ +           S+ + G  I E
Sbjct: 230 MDK--VCVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    RIP+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|153801551|ref|ZP_01956137.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-3]
 gi|124122878|gb|EAY41621.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-3]
          Length = 1146

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +      + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 721 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842


>gi|70730559|ref|YP_260300.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344858|gb|AAY92464.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1059

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 149/371 (40%), Gaps = 35/371 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             +   N         ID +  G+ V   D  ++ L N        T             
Sbjct: 350 RAQQCLNESEDFNRVVIDTVPSGLCVVSRDNLQVILQNRQAEQWQGT------------- 396

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
            A   SR   +     L     TS D + + LQ  +E +S       ++       + TF
Sbjct: 397 -AQLLSRLAQDRS---LIDGGETSLDIDGRYLQ--VEFVSTRYQRQDVL-------VCTF 443

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +VT  V   RAL     +   A+  K  F+  +S+E+R+PL    G    L+   L  L
Sbjct: 444 NDVTRHVEDARALDRARRSADAANAAKTLFLATMSHEIRTPL---YGVLGTLELLGLTRL 500

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +S+QS Y++ I  SS+ L  L++D+LD++ ++AG M ++       D+L +V  + A   
Sbjct: 501 DSRQSDYLQTIQRSSSTLFQLISDVLDVSRIEAGQMSIDPLEFCPLDMLEDVLHAHAASA 560

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNG 717
               +      D  L   +  D  R+ QI + +LSNA+ F+  G  V+    L+      
Sbjct: 561 QRRGLLFYACIDPNLPDLLLGDAARISQILNNLLSNAIKFTESGRVVLRVRLLELRDQQA 620

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              + V + G  I       +F  F          G GLGL+I E    + GG + ++S 
Sbjct: 621 RIEWQVTDTGIGISAQQQPQLFVPFFQVRDASNEAGAGLGLAICERLCQMMGGQMQVTSE 680

Query: 778 DEGVTTINCRI 788
               ++ + R+
Sbjct: 681 PGLGSSFSLRL 691


>gi|22651420|gb|AAL13332.1| bZIP histidine kinase [Pseudomonas mendocina]
          Length = 973

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 99/395 (25%), Positives = 170/395 (43%), Gaps = 36/395 (9%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF--------RSLWKTE 470
           L  +   E K   L ++     D L E V +    G +   N A           +    
Sbjct: 22  LKEKASAELKREELARI---IFDGLYEFVGLLDAQGNVLEVNQAALNGAGVTLEEIRGKP 78

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
             +       +   A   R    +   +         D E     G  E+++   +++S+
Sbjct: 79  FWKARWWQISKESVANQKRLVEAASSGEFV-----RCDIEILGKSGGREVIA---VDFSL 130

Query: 531 IPLPNAQTMLTF-----VNVTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSY 578
           +P+ + Q  + F      N+TD  +AE  L  KN  L       RK D  K+ F   VS+
Sbjct: 131 LPIRDEQENIVFLLAEGRNITDKKKAEAMLALKNHELEQLVERIRKLDNAKSDFFAKVSH 190

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ELR+PL+ I+G  + +  ++ G  +    ++ E I  ++  LL  VN +LDLA +DA  M
Sbjct: 191 ELRTPLSLILGPLETIMEAESGRGSPYWKKF-EVIQRNAMTLLKQVNTLLDLAKMDAQQM 249

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
            L+Y    L+ L   +  +      + +I +       L + V D ++  +I   +LSNA
Sbjct: 250 GLSYRRADLSQLTRVISSNFDGIAQQKSITLDAELPPHLIAEV-DCEKYERIILNLLSNA 308

Query: 699 MDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVG 755
             F+  G  +    +       + +V ++G  IP+++ K +F RF      GQ+  +G G
Sbjct: 309 FKFTPDGGLIRCHLSLSQPAHALITVSDSGPGIPQNLRKEIFERFHQLNQEGQQANQGTG 368

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           LGLSIV+ F+ LH G +S+S +  G      ++P 
Sbjct: 369 LGLSIVKEFVELHHGTISVSDAPGGGALFQVKLPL 403



 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 145/412 (35%), Gaps = 32/412 (7%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL---VKVQGETIDHLSEGVAVFGPD 453
           G  L   ++       +     +  +  L+     L           ++ + G+ +   +
Sbjct: 573 GDALRKELSDQSNDIALLTHRLIKSRHRLQQSNIALTASEARWKAVYENSAAGIVLTDTE 632

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            RI  +NPAF+ +    E  L+    +  +     R   +     L  +    +  E   
Sbjct: 633 NRILNANPAFQRITGYTEKDLAQ-LSMEQLTPPNERTQMKQRLARLLQSGGAEYSVECSY 691

Query: 514 L--QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN- 570
           L   G+    + SV   S         +    ++T+  +A+  L +  + L +       
Sbjct: 692 LCKNGSTIWANASVSLMSPRVDEPQVILQIIDDITEKKQAQETLNQLQQELVQVSRSATM 751

Query: 571 -SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS---KQSQYVEYISASSTI---LLNL 623
             F  ++++E+  PL+ I+   +   T  +G+      +  + +  I   S     ++ +
Sbjct: 752 GEFAAYIAHEINQPLSAIMTNANA-GTRWIGNEPPNIMEAKEALARIIRDSDRAADIIRM 810

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V   L                I L  L+ +    +      N + + VI+   L + + D
Sbjct: 811 VRSFL-------KRQGPVLKPIDLKALVADTTLILKAPSQSNGVSLNVIAGDTLPAIMGD 863

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVI------LKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             ++ Q+   +  N+++  S+             +   N   I  VK+ G  IPED    
Sbjct: 864 AVQIQQLVINLAMNSIEAMSQVGCETRQLALSFSSNASNDALIICVKDTGPGIPEDQIGQ 923

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +FN F       ++ G+G+GL+I  +   +H G +   S   G       IP
Sbjct: 924 LFNAFY----TTKKEGLGMGLAICLTIAEVHNGKIWAESPPAGGACFFVSIP 971



 Score = 41.5 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 80/261 (30%), Gaps = 40/261 (15%)

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
           ++++++  +   ++ IA+  S+             +  N    I + D    +   N +F
Sbjct: 591 THRLIKSRHRLQQSNIALTASEA--------RWKAVYENSAAGIVLTDTENRILNANPAF 642

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT---W 392
             +       LA           L      P        K+ +  + +S          +
Sbjct: 643 QRITGYTEKDLAQ----------LSMEQLTP-PNERTQMKQRLARLLQSGGAEYSVECSY 691

Query: 393 HLPNGQTLHVIVT---SNPRGG----TIWMFENLTVQVDLETKYNTLVK--VQGETIDHL 443
              NG T+    +    +PR       + + +++T +   +   N L +  VQ      +
Sbjct: 692 LCKNGSTIWANASVSLMSPRVDEPQVILQIIDDITEKKQAQETLNQLQQELVQVSRSATM 751

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLW----KTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
            E  A    +      N    ++            +   +I       +R   +SD    
Sbjct: 752 GEFAAYIAHE-----INQPLSAIMTNANAGTRWIGNEPPNIMEAKEALARIIRDSDRAAD 806

Query: 500 FAAIITSFDDERKSLQGTLEL 520
              ++ SF   +  +   ++L
Sbjct: 807 IIRMVRSFLKRQGPVLKPIDL 827


>gi|88860288|ref|ZP_01134926.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
 gi|88817486|gb|EAR27303.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
          Length = 902

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 120/249 (48%), Gaps = 15/249 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +   + ++A+E K +F+  +S+E+R+P+  IIG  DLL+ ++   L+  Q +    
Sbjct: 254 QELEKAITSAQQANETKTTFLATMSHEIRTPMNGIIGTIDLLRHTE---LSGPQVRLSSI 310

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  LL +++DILD + ++AG +K++   + +  ++ EV + +++  H+N + + + 
Sbjct: 311 IRDSAFSLLGILDDILDFSKIEAGKLKVDLIPLSVQQIVEEVARVMSSIAHKNALELNLF 370

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFS----SKGSTVILKA-----ARDNGDFIFS 722
            D  +    + D  R+ Q+   + SNA+ F+     K   V +         D     F 
Sbjct: 371 IDPNIPEGLLGDPIRVRQVIYNLCSNAIKFTNSTNDKQGKVSIDVTLSQKTHDFNTVDFK 430

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + +NG  + +     +F  F        R   G GLGLSI +S   L  G + ++S    
Sbjct: 431 ISDNGRGMTKQQLGRIFQPFSQAEDSITREFGGTGLGLSICKSLTELMYGQIKVTSEPGI 490

Query: 781 VTTINCRIP 789
            +     IP
Sbjct: 491 GSEFLISIP 499


>gi|307293713|ref|ZP_07573557.1| integral membrane sensor hybrid histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|306879864|gb|EFN11081.1| integral membrane sensor hybrid histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 764

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 8/248 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L     A   A+  K+ F+ ++S+ELR+PL  I+G+  LL+      L+ +Q
Sbjct: 283 QMEEESHRLQLAKSAAESANNAKSDFLANMSHELRTPLNAILGYAQLLRRDP--KLDERQ 340

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S     I  S + LL L++DILDL+ ++AG  ++  + + L    + +   I  +  E  
Sbjct: 341 SNAARIIDESGSHLLTLIDDILDLSKIEAGKFEICPAALDLRGFASGIADIIRIRAEEKA 400

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD-NGDFIF 721
           +         L   +  D +RL Q+   +L NA+ F+ +G     V L +  D      F
Sbjct: 401 LAFSCEVSPDLPIMMLVDAKRLRQVLINLLGNAIKFTDRGHVGLQVSLTSRSDTEARVRF 460

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I  D   ++F  F      + +  G GLGLSI    + L G    + S    
Sbjct: 461 EVRDTGVGISADKIDAIFQPFEQVGDVQRRAGGTGLGLSISRQLVRLMGSEFEVMSESGR 520

Query: 781 VTTINCRI 788
            +     +
Sbjct: 521 GSQFAFEL 528


>gi|171914206|ref|ZP_02929676.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Verrucomicrobium spinosum DSM 4136]
          Length = 2178

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 138/327 (42%), Gaps = 25/327 (7%)

Query: 480  IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            + N      R            A + S  +E +     LE  +  + E         Q  
Sbjct: 1423 VLNTIEATMRTEGLLQQSQQLTAELQSGQNELQQTNEELEQKAQELAE---------QNA 1473

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                   +  +A RAL +K   L    + K+ F+ ++S+ELR+PL +I+     L  +  
Sbjct: 1474 EVERKNREIEQARRALEDKAAELALTSKYKSEFLANMSHELRTPLNSILILGQQLAENSA 1533

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            G+L+++Q  +   I ++ + LLNL+NDILDL+ +++G + +    I    L + V+++  
Sbjct: 1534 GNLSTRQVDFARNIHSAGSDLLNLINDILDLSKIESGTVSVEAEEITFATLRDSVERNFR 1593

Query: 660  TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDN- 716
                  N+  K+  D  L   F  D +RL QI   +LSNA  F+S+GS  + +  A +  
Sbjct: 1594 HIAENKNLPFKLDFDPGLPRHFSTDPKRLQQIVKNLLSNAFKFTSQGSVNLKVGLASEGW 1653

Query: 717  -----------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
                            ++K+ G  I  +  + +F  F         +  G GLGL+I   
Sbjct: 1654 SPDHPVLSRVPSVMSIAIKDTGIGIVPEKQRLIFEAFQQADAGTSRKYGGTGLGLAISRE 1713

Query: 764  FINLHGGHVSISSSDEGVTTINCRIPS 790
               L GG + + S     +T    +P 
Sbjct: 1714 LATLLGGEIRLHSVAGEGSTFTLYLPL 1740


>gi|150006465|ref|YP_001301209.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           vulgatus ATCC 8482]
 gi|294777014|ref|ZP_06742472.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|149934889|gb|ABR41587.1| two-component system sensor histidine kinase, with a response
           regulator receiver domain [Bacteroides vulgatus ATCC
           8482]
 gi|294449072|gb|EFG17614.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 616

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 165/387 (42%), Gaps = 41/387 (10%)

Query: 403 IVTSNPRGGTIWMFENLT----VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI-- 456
           I++       ++ + ++T    V++ LE K   L +V+         G+  +    R+  
Sbjct: 100 IISKYDEEHFLFQYRDITGRSVVRLKLEKKQKDLCEVEKAA----RIGLWAYDSSTRLFT 155

Query: 457 ------KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
                    N   +     +E       H+ +               D    +      +
Sbjct: 156 YSGYTRIFCNDEEQKQISIDEYM--NYMHLDDKDRFSQWLEENLKEKDASNTVNYRLLID 213

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
            K++   ++     V     +                  +AER+           +++K+
Sbjct: 214 GKTVNMRIKTYHKEVYMQRTVL-----EGYIQNTSEIVWKAERS-----------NQLKS 257

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+ ++S+E+R+PL  I+GF+ ++  ++      ++ QY + +  ++  L  L+N+ILDL
Sbjct: 258 AFLANMSHEIRTPLNAILGFSRIIAETENA---EERLQYYDIVEKNNMRLQELINEILDL 314

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + +++G+M+ NY+ + L  L  +VK + + +     + +             DR RL Q+
Sbjct: 315 SKIESGMMEFNYAPVSLYILCEDVKNTYSFRCQP-GVELVFEESDPSLVISTDRNRLFQV 373

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           FS ++ NA  F++KGS +         + +F V + GS I +D    +F+RF+   +  Q
Sbjct: 374 FSNLIGNATKFTAKGS-ISFGYKLKEKEIVFHVADTGSGISDDKIDKIFDRFIMANN--Q 430

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSS 777
            +G GLGLSI +  +   GG +++ S 
Sbjct: 431 VQGTGLGLSISKIIVEKLGGKIAVQSK 457


>gi|315126766|ref|YP_004068769.1| sensor histidine kinase/response regulator [Pseudoalteromonas sp.
           SM9913]
 gi|315015280|gb|ADT68618.1| sensor histidine kinase/response regulator [Pseudoalteromonas sp.
           SM9913]
          Length = 894

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 117/238 (49%), Gaps = 6/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  E LR A E K+ F+ ++S+E+R+P+T+IIG+ D +    +     +++  +  
Sbjct: 408 QELQQLAEELRDASEAKSRFLANMSHEIRTPMTSIIGYADGIILGDIQP--HERNHGIRV 465

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  +S  +L L+NDILD++ ++A  +++      L   + E++  +  ++ +  ++ KV 
Sbjct: 466 ILQNSRHVLGLINDILDMSKIEANRLEIELVETDLFATIAEIESLLGKQIRDKGLKFKVD 525

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
               L    V+D  RL QI   + +NA+ F+S+G  + L  + +    I  VK+ G  + 
Sbjct: 526 YQFPLPDWIVSDPTRLRQILLNLATNALKFTSQG-YIKLTVSCNKKQLIIKVKDTGIGMT 584

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +   K +F  F         +  G GLGL+I +S      G +++ S     +     
Sbjct: 585 DSEQKDLFTPFHQADSSISRKYGGTGLGLNISKSLATKLDGDITVYSVLGSGSEFCFT 642


>gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 913

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 117/653 (17%), Positives = 249/653 (38%), Gaps = 64/653 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + +++        +        ++  ++ +   W  D    +   +  Y        +  
Sbjct: 146 LANDVTAVKEADFRTEESKKNLEMAMEAANMSSWVYDVNKRVF--SSLYGDPIVENSLTM 203

Query: 234 QKAIGES--------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
            + + +          KLF + I K +       + + E      H  ++       L  
Sbjct: 204 DELLNKLHPQDHASLTKLFSQLINKEVQQGHITVRFYNEQEKRYRHYESRMRLSSEHLGK 263

Query: 286 FGEAGIAIDVSKEITV---NDQLTHTYEILHNLTVAIAIFDQN---RYLQFHNR-----S 334
               G  I+V++ I +      L    E+   ++  I  +D +   +  + +N      +
Sbjct: 264 LLIIGTQIEVTERIQMVKKTQDLITKRELAMQVSN-IVHWDFDVQTQKFESYNDPVNDYA 322

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              L  +   F+      D L     +   +    ++      I    +    + D+W  
Sbjct: 323 SDRLLSV-TEFMDVIHPED-LSSAYDAIQSMLSGKDF-----TINFTCRVQTKYDDSWQY 375

Query: 395 PNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
            N   +      N        F +N++    L  +          T   +  G++ +  D
Sbjct: 376 CNVMGVPFERDENDNIIRFTGFRQNISKLHQLNEELKERNYKMELTFKTV--GMSYWDFD 433

Query: 454 GR----------IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-A 502
            R          +   NP  +++   +  + +    + ++    +     +D    F   
Sbjct: 434 VRSKQFKAFNDPVNDYNPE-KTISPEDYLKAAHPDDVDSVRENLNHMIQGTDKDLSFKYR 492

Query: 503 IITSFDDERKSLQGT-LELLSD---SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
             T +D E + L  T +++  D    V+ Y+ I   N +            +  + L E 
Sbjct: 493 SKTKWDKEWQVLVVTGIQVERDKKGRVVRYTGIEFNNTK----------WEKMAQELKEL 542

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E    +D +K++F+ ++S+E+R+PL  I+GF++L+          ++ +Y+  I +++ 
Sbjct: 543 KEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM---VSCDDPEEKEEYMGIIQSNNE 599

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL L+NDILDL+ +++GI++       L+ + NE+   +  K+    + +++ + G   
Sbjct: 600 LLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEVELRLGNSGPDC 659

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               DR RL Q++   L+NA+  +  G  + +  + + G   F V+++G  IP ++   V
Sbjct: 660 WIFLDRNRLKQVWMNYLTNAVKCTHSG-YIKMGYSIEKGGIRFYVEDSGVGIPLEVQDRV 718

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF       Q  G GLGL+I  + I    G V  SS     +T    IP +
Sbjct: 719 FGRFQKLNEFAQ--GTGLGLAISRAIIEGADGKVGFSSVPGVGSTFWAWIPCE 769



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 68/183 (37%), Gaps = 13/183 (7%)

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                G      ++S    + DQL  T  I  NL V I I+D N  L+  N   + ++ +
Sbjct: 10  TSAEDGNPSFEKEMSDL--IQDQLLFTESIYANLPVGIEIYDANGILRSINDHALHMYGV 67

Query: 342 D--------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +        +    +   +++L   +++   +  +  +   + N  + + S       + 
Sbjct: 68  EDRTTVIGVVNLFNSPYCDEKLRTKIQAGEDIVLEFEYDFDRINKDAYFSSHNQKSMIYE 127

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           +   + + +   + P  G I +  ++T   + + +     K     ++  +    V+  +
Sbjct: 128 V---KVVPIRSKTGPIIGHILLANDVTAVKEADFRTEESKKNLEMAMEAANMSSWVYDVN 184

Query: 454 GRI 456
            R+
Sbjct: 185 KRV 187


>gi|302547112|ref|ZP_07299454.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302464730|gb|EFL27823.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1304

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 135/312 (43%), Gaps = 21/312 (6%)

Query: 498  DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN------AQTMLTFVNVTDSVRA 551
            D           E ++    L++  D  L+ S   L +      AQ         +  +A
Sbjct: 799  DELLEESQRLTAELRARSQELQVRQDE-LQNSNAELEDKAALLAAQNRDIETKTREIEQA 857

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
             + L E+   L  A + K+ F+ ++S+ELR+PL +++    LL  +   +L  KQ +Y  
Sbjct: 858  RQELEERARQLTLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPARNLTPKQVEYAG 917

Query: 612  YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
             I ++ + LL L++DILDL+ V+AG M +    + L  LL+ V+ +      +  +  ++
Sbjct: 918  VIHSAGSDLLQLIDDILDLSKVEAGKMDVEPERVPLQRLLDYVEATFRPMTAQKGLDFRI 977

Query: 672  -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAARDNGDF 719
             +S       V D  RL Q+   +LSNA+ F+  G+  +            +        
Sbjct: 978  SVSPAVPAELVTDDSRLRQVLRNLLSNAVKFTESGAVELRIAPAAESDLPREVRGQGPAL 1037

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             F V + G  I E   +++F  F         +  G GLGLSI     +L GG V  +S+
Sbjct: 1038 AFRVVDTGIGIAEQQLEAIFAAFQQADGTTSRKYGGTGLGLSISREIAHLLGGAVHAAST 1097

Query: 778  DEGVTTINCRIP 789
                +T    +P
Sbjct: 1098 LGEGSTFTFYLP 1109


>gi|254410303|ref|ZP_05024083.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183339|gb|EDX78323.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 747

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 159/382 (41%), Gaps = 16/382 (4%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPG 477
           +  +  +E +  T  +   +  +++ E   +  PD  ++   +P ++ +W      L   
Sbjct: 367 IIERKRIEEQLRTSEEQLRQLTENIREVFFLTTPDFSQMIYISPVYQEVWGRSTKSLYEQ 426

Query: 478 TH--IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               + +I         ++           +F +E + ++      S   +     P+ N
Sbjct: 427 PSSWLESIHPEDRDRVTQALHKQSLGE--ANFQEEYRIVR---PDSSVRWMGVRAFPVVN 481

Query: 536 AQTMLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
              +   +     ++T+  R +  +       ++  ++K+ F+   S+E R+PLT I   
Sbjct: 482 EAGITIRIAGIAEDITERQRVQAEILNALAQEKELSDLKSRFITVTSHEFRTPLTTIHSS 541

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +LL+  +    + KQ  ++  I  S   +  L+ND+L L   DAG + L+   I L   
Sbjct: 542 AELLEHYRHKWSDEKQQMHLHRIQGSVKYMTKLLNDVLILGKTDAGKLALSLEPINLELF 601

Query: 651 LNEVKQSIA---TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
              + + +     ++   NI  +            D+Q L QI   +LSNA+ +SS   T
Sbjct: 602 CATLVKELQLNQPELSVINISYEWELTLDAQVIYLDKQLLQQILENVLSNAIKYSSSEET 661

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
           + +K   +       +++ G  IP D    +F  F    + G   G GLGL+IV+  +++
Sbjct: 662 IEVKLKGNREQITLEIRDRGIGIPLDDQDRLFEAFHRGTNVGTIPGTGLGLTIVKKCVDI 721

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G++ I+S     TT+   +P
Sbjct: 722 HQGNIDINSIIGVGTTVTVTLP 743



 Score = 41.1 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAI----AIFDQN-RYLQFHNRSFVELWEIDLAFLAT 348
           ++ +   + +QL  + E L  LT  I     +   +   + + +  + E+W      L  
Sbjct: 366 EIIERKRIEEQLRTSEEQLRQLTENIREVFFLTTPDFSQMIYISPVYQEVWGRSTKSLYE 425

Query: 349 NPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP 408
            PS    LE +      PE  +  T   +  S+ +++   +     P+     + V + P
Sbjct: 426 QPS--SWLESIH-----PEDRDRVTQALHKQSLGEANFQEEYRIVRPDSSVRWMGVRAFP 478

Query: 409 RG-------GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
                        + E++T +  ++ +    +  + E  D  S  + V   + R
Sbjct: 479 VVNEAGITIRIAGIAEDITERQRVQAEILNALAQEKELSDLKSRFITVTSHEFR 532



 Score = 38.0 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 79/218 (36%), Gaps = 27/218 (12%)

Query: 158 RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQA-GDIL 216
           RV    A LR    D + +E+ E     ++L       + L +++  + +        ++
Sbjct: 348 RVEERTAALR-KVNDVLQAEIIERKRIEEQLRTSEEQLRQLTENIREVFFLTTPDFSQMI 406

Query: 217 WANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEK----NFCETVSTL-EH 271
           + +  Y++          +      +    E + R+  +   +     NF E    +   
Sbjct: 407 YISPVYQEVWGRSTKSLYEQPSSWLESIHPEDRDRVTQALHKQSLGEANFQEEYRIVRPD 466

Query: 272 GNNKSYKIVR--VLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD-Q 324
            + +   +    V+N  G     AGIA D+++   V        EIL+ L     + D +
Sbjct: 467 SSVRWMGVRAFPVVNEAGITIRIAGIAEDITERQRVQ------AEILNALAQEKELSDLK 520

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
           +R++   +  F          L T  S+ ELLE  R  
Sbjct: 521 SRFITVTSHEFR-------TPLTTIHSSAELLEHYRHK 551


>gi|255035394|ref|YP_003086015.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948150|gb|ACT92850.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1366

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 11/248 (4%)

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              R E+ +  + E L++ D IK+ F  ++S+E R+PLT I+   +     +L   + +  
Sbjct: 796  RERTEK-IMLQTEELKEMDRIKSRFFANISHEFRTPLTLILAPLE----EELNKKSPEAQ 850

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
              +  +   +  LL LVN +L L+ ++AG M+L      L   L  +  S  +      I
Sbjct: 851  DKLLMMKRYANRLLELVNQLLSLSKLEAGKMELQIQKSDLRRFLGVLSSSFDSLAQHKGI 910

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD----NGDFIFSV 723
                      G F  D  +L ++   +LSNA  F+  G +V  +A             +V
Sbjct: 911  SFTTTVGVPEGHFWFDPDKLEKVIINLLSNAFKFTPAGGSVRFEAQVTPRAGRQILHIAV 970

Query: 724  KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G  I     K VF  F       +    G GLGL+  +  + LH G +S+ S     
Sbjct: 971  ADTGPGIAPAEQKQVFESFYQARRTSENHDGGTGLGLAFAKELVKLHKGEISLQSEVGKG 1030

Query: 782  TTINCRIP 789
            +  +  +P
Sbjct: 1031 SVFSIEVP 1038


>gi|161936330|ref|YP_128770.2| aerobic respiration control sensor protein ArcB [Photobacterium
           profundum SS9]
          Length = 798

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 148/379 (39%), Gaps = 17/379 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  + + + +      +    +D   + +      G     N A   L    E  L  
Sbjct: 138 NEVYQRENAQLELAEQSALLKSFLDASPDLIYYRNEKGEFSGCNRAMAELTGKTEKGLVG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T     +   +    E+D       +  +++   +   G       +V E   +P    
Sbjct: 198 LTPWDVYSEEAAIKIVETDEQVFQKNVSLTYEQWLEYPDG-----RKAVFELRKVPFYRR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 +        ER   +  +A  KA   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 253 DGRRLGLMGFGRDITER--KQYQDAQEKASRDKTAFISTISHELRTPLNGIVGLSRMLLE 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q  Y+  +  S+  L N+ NDI+D+   D   ++L    +  N+ + E++ 
Sbjct: 311 T---PLNDEQRGYMRTVHVSAITLGNIFNDIIDMDKSDRRRLELMPKPLDFNEFVTEMEN 367

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KA 712
             +    +  +R  +    KL +F+  D  RL Q+   ++ NA  F+ +G  ++    + 
Sbjct: 368 ISSLMAEQKGLRFDLERLTKLPAFIEVDSTRLRQVLWNLIGNATKFTKEGGVILSVSSEI 427

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHG 769
                +  F V+++G  IP      +F  +      +      G G+GL++    + L G
Sbjct: 428 FEHEAEITFDVEDSGIGIPASEVDKIFTMYYQVKQGSDNLHAVGTGIGLAVSRQLVQLMG 487

Query: 770 GHVSISSSDEGVTTINCRI 788
           G++ ++S     +T    I
Sbjct: 488 GNILVTSDIGEGSTFTVTI 506



 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           +++  + +E+ +      +L+   ++ K   D+   L+++R++ G+    N +     E 
Sbjct: 131 IAMHDLENEVYQRENAQLELAEQSALLKSFLDASPDLIYYRNEKGEFSGCNRA---MAEL 187

Query: 229 EGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV 280
            G   +  +G +   ++ EE   +++ +   E+ F + VS           G    +++ 
Sbjct: 188 TGKTEKGLVGLTPWDVYSEEAAIKIVETD--EQVFQKNVSLTYEQWLEYPDGRKAVFELR 245

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQ 304
           +V          G  G   D+++     D 
Sbjct: 246 KVPFYRRDGRRLGLMGFGRDITERKQYQDA 275


>gi|325925445|ref|ZP_08186839.1| PAS domain S-box [Xanthomonas perforans 91-118]
 gi|325544123|gb|EGD15512.1| PAS domain S-box [Xanthomonas perforans 91-118]
          Length = 1150

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 167/404 (41%), Gaps = 21/404 (5%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD R+   N
Sbjct: 605  RLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWN 664

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              ++ L+   +  L  G  + ++    +      +G D+   I       R       E 
Sbjct: 665  RRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFER 723

Query: 521  L--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-----------DE 567
                  V+E     LP    + ++ ++TD  RAERAL + NE L +             +
Sbjct: 724  TRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSREAELAQQ 783

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K  F+  +S+++  PL     F   L+ S     N +Q    E + AS      L++ +
Sbjct: 784  SKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAAEELLDGL 841

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD++ +DAG ++        + L++E+    A       ++++V    +     +DR+ L
Sbjct: 842  LDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVAASRGLQLQVHV--RPIWVRSDRRLL 899

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
             ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F  F     
Sbjct: 900  RRVMQNFLANALRYTRQG-RIVLGMRGRGQQVELQVWDTGPGIPEHHMRQIFEEFRRYQQ 958

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 959  PFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1002



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 562 AHRAFVDQAVLLERELQPTVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 621

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 622 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 681

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 682 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 740

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 741 GGYVTSYNDITDYKRAERALLDANENLEQ 769


>gi|229589127|ref|YP_002871246.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229360993|emb|CAY47855.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 989

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 91/486 (18%), Positives = 170/486 (34%), Gaps = 63/486 (12%)

Query: 333 RSFVELWEIDL--AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
             F  + ++ +   F   +P  D LL  L      P  L++ +       + +  E    
Sbjct: 278 DEFERVLQLSVYNQFTLISPQGDVLLGSLGDEQMAPLGLSFNSQGLRFKMLSEGGEHWTG 337

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFEN---------------LTVQVDLETKYNTLVKV 435
            + +     L          G  ++                  +  Q   E  +      
Sbjct: 338 LYAISYQDFLRYAKWPLLGLGLTFLAAVLLGWWINHWYKTRIVIPAQRAQERLF-ESEAF 396

Query: 436 QGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
               + +   G+ V    D ++ L N     L  T               A        +
Sbjct: 397 NRIMLHNAPAGLCVVRRSDCQLLLENQRALQLGGT---------------AQLVEALRAN 441

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           DG D    +  +              +    L+  ++        +      D  R    
Sbjct: 442 DGPDTPGEMCLA--------------VQGRYLQVVVVAARYEGEDVFLCGCNDITRHVDE 487

Query: 555 ---LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L +  +    A+E K  F+  +S+E+R+PL  ++G  +L+    L  ++ +Q QY+E
Sbjct: 488 TLQLDQARQEATAANEAKTVFLATMSHEIRTPLYGVLGNLELMA---LTDMSERQRQYLE 544

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  SST+L  L++++LD++ +++G M +  +      L+ E     A       ++I  
Sbjct: 545 IIQGSSTVLFQLISNVLDVSKIESGQMAVEAAPFSPRQLVEESVLGFAATARNKGLQIDA 604

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKN 725
             D ++    + D  R+ QI   +L NA+ F+  G  V L+        D     + V +
Sbjct: 605 EIDPQVPLQLLGDAGRIRQILHNLLGNAIKFTESG-RVRLRLTVQALLEDEVALQWQVTD 663

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP+   + +F  F   A      G GLGLSI      L GG + + S     ++ +
Sbjct: 664 TGVGIPDKALEQLFKPFYQVAGGQDGNGAGLGLSICSRLSELMGGTMRVVSEPGLGSSFS 723

Query: 786 --CRIP 789
               +P
Sbjct: 724 LFITLP 729


>gi|190572924|ref|YP_001970769.1| putative sensor histidine kinase/response regulator fusion protein
           [Stenotrophomonas maltophilia K279a]
 gi|190010846|emb|CAQ44455.1| putative sensor histidine kinase/response regulator fusion protein
           [Stenotrophomonas maltophilia K279a]
          Length = 1075

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 146/369 (39%), Gaps = 30/369 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            +           +D+   G+ +    DG + L N   R     + +        R    
Sbjct: 346 ARLLESEAFSRTILDNAPIGLCLLRRTDGNVLLDNTLARRWLGEDHHSGGWHGPWRR--- 402

Query: 486 TCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
                        + AA  T+  D     + +G   L++ +   Y   P      +  F+
Sbjct: 403 ------------SVLAAGGTTLGDGLAYTTPEGRHLLVTATPARYRGEP----AVLCLFI 446

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +++    AE+ L +   A  +A+  K+ F+  +S+E+R+PL    G    L+   L  L+
Sbjct: 447 DLSSQHEAEQVLQQARRAADQANRAKSQFLATMSHEIRTPL---YGVLGTLELLGLTPLD 503

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q  Y+  I  SS+ L+ L++DILD++  +AG + L  S      L  +   S A    
Sbjct: 504 ARQQDYLATIQRSSSTLMQLISDILDVSKAEAGQLSLEPSPFDPVRLTEDALDSYAAAAA 563

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---F 719
              +R     D  +   V  D  R+ Q+ + ++SNA+ F+  G  V+  +AR        
Sbjct: 564 NKGLRFYACIDADVPPVVCGDAARIRQVLNNLISNALKFTDSGRVVVRVSARWQEQRCWL 623

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA-HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            + V + G  I  +    +F  F          RG GLGL+I    + L  G + + S  
Sbjct: 624 QWQVADTGIGIASEHQAHLFEPFFQANPGTDAMRGTGLGLAICAHLVALMEGQLRVVSES 683

Query: 779 EGVTTINCR 787
              ++ +  
Sbjct: 684 GLGSSFSVE 692


>gi|159127383|gb|EDP52498.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus A1163]
          Length = 1937

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 15/294 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            T      K       L+    +E S      A    T  ++ D    ER L +  + L  
Sbjct: 1172 TEIRIRSKGGDYRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNN 1231

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              E K  F  ++S+E+R+PL  I+G    +  ++   L++ Q + ++ I  SST L  LV
Sbjct: 1232 QMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQ---LDTDQRRMLDTIQNSSTNLRELV 1288

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
            ++ILD++ V+AG M L  S   +  ++ +V  +I+++  +  + +  + D       + D
Sbjct: 1289 DNILDVSRVEAGKMSLVNSWFHVRSVVEDVIDTISSRALDKGLELNYLMDVNVPPMVIGD 1348

Query: 684  RQRLLQIFSKILSNAMDFSSKGST-VILKAARD------NGDFI--FSVKNNGSSIPEDM 734
            R R+ Q+   ++ NA+ F+++G   +     RD        + +  F V + G       
Sbjct: 1349 RFRIRQVLINLVGNAVKFTTQGEVHINCGIYRDASVPLKETELLLNFDVVDTGKGFSARD 1408

Query: 735  CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + +  RF         Q  G GLGL + +  + +HGG ++ SS +    T + 
Sbjct: 1409 AERLMQRFSQLGENASQQNAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGATFSF 1462


>gi|163848304|ref|YP_001636348.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526218|ref|YP_002570689.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163669593|gb|ABY35959.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450097|gb|ACM54363.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 920

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 155/364 (42%), Gaps = 31/364 (8%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                  + +   +  +S+GV V    GRI L NPA R L +           I ++  T
Sbjct: 574 EAAQRDAEQRRAILASISDGVIVSDARGRIVLLNPAARQLLQPV-LPAHADLSIHDLPLT 632

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                +E  G                     +  +    L     P+             
Sbjct: 633 GKEARSELFGRP-----------------EEVVTIGHRFLTVGRAPV---------CMTD 666

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            +   E  +     +  + D  K  F+  +S+ELR+PLT + G+ +L+      +L+++Q
Sbjct: 667 GTRLGEVIVLHDVTSAIQIDRAKTDFIATISHELRTPLTIVRGYLELILRQSASALDAEQ 726

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +E +  S+  + +LVN+ + +A +DAG +++    + L  ++ E  +     + E +
Sbjct: 727 RDMLEEVRQSAIQMTHLVNNAIMVANLDAGQIEVQIQPVALAPVIEEALRPYRAVLSERD 786

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I++ ++    L   +ADR+ L Q  S++  NA  +  +G  +++ A  D+     ++ + 
Sbjct: 787 IQVLLVLPDDLPPVLADRELLKQALSQLFDNARRYVHQG-QILVSAGVDSDTLWLAISDT 845

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP ++   +F RF      +  QR G GLGL+I    + L GG ++++S+    +T 
Sbjct: 846 GPGIPTEIMGRLFTRFQRVDGNNSAQRGG-GLGLAITRQLLELQGGSITVTSTPGQGSTF 904

Query: 785 NCRI 788
             R+
Sbjct: 905 TIRL 908


>gi|70999298|ref|XP_754368.1| sensor histidine kinase/response regulator [Aspergillus fumigatus
            Af293]
 gi|66852005|gb|EAL92330.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus Af293]
          Length = 1937

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 15/294 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            T      K       L+    +E S      A    T  ++ D    ER L +  + L  
Sbjct: 1172 TEIRIRSKGGDYRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNN 1231

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              E K  F  ++S+E+R+PL  I+G    +  ++   L++ Q + ++ I  SST L  LV
Sbjct: 1232 QMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQ---LDTDQRRMLDTIQNSSTNLRELV 1288

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
            ++ILD++ V+AG M L  S   +  ++ +V  +I+++  +  + +  + D       + D
Sbjct: 1289 DNILDVSRVEAGKMSLVNSWFHVRSVVEDVIDTISSRALDKGLELNYLMDVNVPPMVIGD 1348

Query: 684  RQRLLQIFSKILSNAMDFSSKGST-VILKAARD------NGDFI--FSVKNNGSSIPEDM 734
            R R+ Q+   ++ NA+ F+++G   +     RD        + +  F V + G       
Sbjct: 1349 RFRIRQVLINLVGNAVKFTTQGEVHINCGIYRDASVPLKETELLLNFDVVDTGKGFSARD 1408

Query: 735  CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + +  RF         Q  G GLGL + +  + +HGG ++ SS +    T + 
Sbjct: 1409 AERLMQRFSQLGENASQQNAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGATFSF 1462


>gi|283851290|ref|ZP_06368572.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573240|gb|EFC21218.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 656

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 110/239 (46%), Gaps = 14/239 (5%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E  R+A+  K+ F+ ++S+E+R+PL  I+G   L   +++ SL+     Y+E   AS+  
Sbjct: 280 ERARQANRAKSEFLANMSHEIRTPLNGIMGMVHL---ARMQSLDRTTLSYLELADASAQH 336

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLG 678
           LL +VND+LD+A ++AG ++L      L          +        + +   ++     
Sbjct: 337 LLGIVNDVLDIAKMEAGKIRLARQAFDLRREFEATLTPLRIAAQGKGVVLDHAVAPDVAD 396

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-------GDFIFSVKNNGSSIP 731
             V D  RL Q+ + ++ NA+ F+ +G  + ++  R+             ++++ G  +P
Sbjct: 397 HVVGDVGRLRQVLTNLVGNAVKFTGQG-RIDVRVDREGAADEAGGQRLRVTIRDTGIGVP 455

Query: 732 EDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            D  + +F  F            G GLGLSI +  + L GG +   S +   +T    I
Sbjct: 456 ADRLERIFESFEQAHTSAHALYGGTGLGLSIAKRLVELMGGDIRAESREGEGSTFAFTI 514


>gi|213968170|ref|ZP_03396315.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301383824|ref|ZP_07232242.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058498|ref|ZP_07250039.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302133390|ref|ZP_07259380.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213927150|gb|EEB60700.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 641

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 118/251 (47%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++     +Q
Sbjct: 241 EQQRSVAQLIQTREEAERANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TDEQ 297

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 298 SEYATLATESTEHLLKVINDILDFSRIERDALQMEGIAFNLAELVSVSTHAFNHSALQRK 357

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           + +++      +  + + D  R+ QI   ++ NA+ F+ +G  V ++A     D+    F
Sbjct: 358 LLLELHVQPGLEAMTVIGDPTRIRQILVNLIGNALKFTEEG-KVCVEADWLMLDDEQLRF 416

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V ++G  I  +  +S+F+ F         +  G GLGL I        GG +   S 
Sbjct: 417 TCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARKLAERMGGTLYAESV 476

Query: 778 DEGVTTINCRI 788
           +   +    +I
Sbjct: 477 EGAGSAFTLQI 487


>gi|148242922|ref|YP_001228079.1| two-component system sensor histidine kinase NblS [Synechococcus
           sp. RCC307]
 gi|147851232|emb|CAK28726.1| Two-component system sensor histidine kinase NblS [Synechococcus
           sp. RCC307]
          Length = 644

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 155/385 (40%), Gaps = 41/385 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +  P+G++ L NP  R L++ E  +L     +R +  +
Sbjct: 262 EELTAAQVKQQSLIATMADGALLLDPEGQVVLVNPTARRLFRWEGRKLEGQELLRLLPDS 321

Query: 487 CSRYYNES-----DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
            +    E            A +  S ++  ++L+  L+ + D           + +T+  
Sbjct: 322 LTMELQEPFDAVRSRERDSAEVRCSINEPNRTLRLVLQAVRDG----------SGETLKG 371

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L       
Sbjct: 372 IAVTVQDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDMGDQL 421

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                 +++   +A +  L  LVND+LDL+ +++  +  ++    +   + +  ++    
Sbjct: 422 DEEMTREFLATANAETDRLTRLVNDVLDLSRLESDRV-WSFEPTEVEAAMEQTLRTYKLN 480

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
             +  + + +     L     +   LLQ+F  ++ NA+ FS+ G  V L+A         
Sbjct: 481 ADDKGVSLDLAVPPSLPRVRGNYDLLLQVFDNLVGNAVKFSTSGDMVQLRAYLWPDTCPI 540

Query: 718 ----------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFIN 766
                          V ++G+ I E+ C+ VF RF    +      G GLGLSIV   + 
Sbjct: 541 KADDASSPLPRLRVEVADSGTGISEEDCRRVFERFYRVENAVHTEAGTGLGLSIVRGILQ 600

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HG  +S+ S     TT    +P +
Sbjct: 601 KHGSDISMVSELGVGTTFWFDLPLE 625



 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 61/185 (32%), Gaps = 17/185 (9%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            S  + +F   ++    G     +++   N+      A D +    +         ++  
Sbjct: 220 RSVADGDFGARIALPVGGE--LGELLNGFNTMATQLEAYDEANIEELTAAQVKQQSLIAT 277

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +     + D    +   N +   L+  +   L       ELL  L  +  +  Q  +   
Sbjct: 278 MADGALLLDPEGQVVLVNPTARRLFRWEGRKLEGQ----ELLRLLPDSLTMELQEPFDAV 333

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETK 428
           +       +   +  +    PN +TL +++ +   G      G     ++LT +V+L   
Sbjct: 334 RSRERDSAEVRCSINE----PN-RTLRLVLQAVRDGSGETLKGIAVTVQDLTREVELNAA 388

Query: 429 YNTLV 433
            +  +
Sbjct: 389 QSRFI 393


>gi|148978826|ref|ZP_01815179.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145962137|gb|EDK27422.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 574

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A++ K+ F+  +S+ELR+PL  IIG  D LK+++   L  +Q   +  +
Sbjct: 195 ELVTARKDAERANKAKSEFLAMMSHELRTPLNAIIGLIDTLKSTQ---LTPEQQSILLNM 251

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S SS +LL +++D+LD + +++G   L      + D +  V         +  + + + S
Sbjct: 252 STSSELLLAIISDVLDFSKIESGCFSLAPQWSNVRDTVTFVLSEQKKAADDKGLTLTISS 311

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D   G     D  RL QI   ++ NA+ F+  G  V +        F  +V++ G  I  
Sbjct: 312 DIPEGELHYIDPSRLAQILFNLIGNAIKFTEHGH-VHVSIKYQQSSFYIAVEDTGIGISS 370

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               S+F+ FV       RR  G GLGL+I +  + L  G +S+ S     +    ++P
Sbjct: 371 QQLSSLFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGRISVESEPGKGSKFEVQLP 429


>gi|153819791|ref|ZP_01972458.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae NCTC 8457]
 gi|126509670|gb|EAZ72264.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae NCTC 8457]
          Length = 868

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +    G + L+N A+R ++ T                 CS +
Sbjct: 214 EQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 267

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 268 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 325

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 326 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 382

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 383 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 442

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 443 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 501

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 502 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 561

Query: 788 IPS 790
           +P 
Sbjct: 562 LPL 564



 Score = 39.9 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           LSL  +  +L  +    K  +  +     L D++  +++  D  G+++  N +Y+K
Sbjct: 193 LSLSRLRGKLRSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRK 248


>gi|330718003|ref|ZP_08312603.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           fallax KCTC 3537]
          Length = 621

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 142/379 (37%), Gaps = 32/379 (8%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T   +     N+        + H+++GV      G I + N A  +         + G++
Sbjct: 250 TRVEESTEAVNSERNRLDSVLTHMADGVLAANRRGEITIINQAAANFVGKTPEE-ALGSN 308

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           + ++     +        +L   +I   DD    L              S+I   +    
Sbjct: 309 VIDLLHLQGKRKLRDMLENLDDFLIDLSDDSHDLLVQAY---------VSLIKRQSGFIS 359

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              V + D    +R            D  +  FV +VS+ELR+PLT++  + D L    +
Sbjct: 360 GLVVVLHDITEQQR-----------IDSERRMFVSNVSHELRTPLTSVRSYVDALADGAI 408

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
                    ++  +   +  ++ ++ND+L+L+ +D G M++    + LN L N V     
Sbjct: 409 DD-PEMSHNFLGVVQDETQRMIRMINDLLELSRLDQGTMEVKLEIVNLNSLFNFVLDRFD 467

Query: 660 TKMHE--------NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             +             +I+     +      D  +  Q+   I++NA+ +S  G T+  +
Sbjct: 468 MILENDAKKDNGNKQYKIQREFTKQDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITAR 527

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
             +     I S+ + G  IP     ++FNRF        R   G GLGL+I +  +    
Sbjct: 528 LIKTKTRAILSISDEGLGIPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFK 587

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + + S +   +T    +
Sbjct: 588 GRIWVDSVENRGSTFYISL 606


>gi|312183673|gb|ADQ42406.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
            harundinacea]
          Length = 1176

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 112/677 (16%), Positives = 226/677 (33%), Gaps = 60/677 (8%)

Query: 134  LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
            LRKEG +F L+  +     I  +GR  G         L G   ++ E     + +     
Sbjct: 535  LRKEGTTFHLIVYS---RPIIRDGRPVG---------LRGTIVDITERKRVEENIKQLAD 582

Query: 194  VFKVLFDSLDFLVWHRDQAGDILWANIS------YKKNTETEGIVFQKAIGESRKLFKEE 247
            + + L +    +++  D+   I   N +      Y              +    +   E 
Sbjct: 583  LSEKLVEIGSPMIFVIDRDRRIFLWNRASEKALGYSAEEVLGDEEVWTLLFPDGEERSEF 642

Query: 248  IKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------AGIAIDVSKEITV 301
            +K        L      T    + G  K      +    GE         A D ++   +
Sbjct: 643  LKTLDEIEMGLTAEGRRTRILAKSGEEKVISWSGIKLEDGEGNGIGIVITAQDTTEYAKM 702

Query: 302  NDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
             +++    E    +     +F    D    +   NR   ++  +              + 
Sbjct: 703  EEEIRSEREFSRGIIEGADLFIVGLDPRGRITLFNRGAEKVTGVSAKEAFGENFFMRFVA 762

Query: 358  FL-RSANKLPEQLNWKTWKENIFS---VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
               R   ++     ++           V ++ E     W         V   +      I
Sbjct: 763  GADRRGFEMAVSSIFEGKPAEQTEAAVVTRTGEPMAIQW-----GWSAVRSRTGEIERVI 817

Query: 414  WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
                +++    LE +    + +  + I+  ++G+A+FG    +  +NPA   ++      
Sbjct: 818  AFGHDISYDRWLEEQ----MLLFMDAIESSNDGIAIFGKSNHLLFANPALLDMFGFR--- 870

Query: 474  LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                              ++    D    + +S +      + T      S    SI   
Sbjct: 871  ----------LEEARGRLHQDFILDFGEDVSSSGEGNGGRRRVTCVRKDGSTFPASISFA 920

Query: 534  PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            P A +    +      R    + E  + L   +    SF   +S++LR+PL  I GF   
Sbjct: 921  PVASSDGKPMATIVVARDISEMIEYQQRLETLNRELESFAYTISHDLRAPLRGIRGFALA 980

Query: 594  LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
            L+      L     +Y+E I A +  +  L+ D+LD + +  G +K     + L  L+ E
Sbjct: 981  LQEDYGDDLEEAGRKYLERIGAIAENMDRLILDLLDYSRI--GRIKSPPEMVDLKRLVAE 1038

Query: 654  VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              + + +        + ++  G+  +   +R R  Q+FS +L N++ +S     + + + 
Sbjct: 1039 AYEDVKSAGKGKPATLSLV--GEFPTISCERSRAKQVFSNLLENSLKYSKDAIEIEVGSL 1096

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                ++ F VK++G        + +F+ F      G   G G+GL+ V+  +   GG + 
Sbjct: 1097 DRGDEYEFWVKDDGLGFDMKYAEKIFDPFTRLERSG--EGSGIGLATVKKIVETCGGRIW 1154

Query: 774  ISSSDEGVTTINCRIPS 790
              S+          IP 
Sbjct: 1155 AESAPGRGAAFRFTIPK 1171



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 88/585 (15%), Positives = 192/585 (32%), Gaps = 65/585 (11%)

Query: 41  IILLIRQ--RNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL--------TIVWDGKD 90
            +  +R   R  L   +   +  + ++ +Q     +L      L          +W+   
Sbjct: 153 SVHHVRTYGRPILEGHLRGIHGIMVDVTEQKKAEEALRESEERLKLAVEGADLAIWNRDL 212

Query: 91  ETPEIIGQ--LHQRID-IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS----FDL 143
            T E++G     + +   P  ++D+L+   W +  H   L      LR+        FDL
Sbjct: 213 STGEVVGNRRYAEIVGTAPAEESDVLA---WKRSIHPEDLPSVERALREIAAGRTDLFDL 269

Query: 144 VAETQNDCA---IKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISV---FKV 197
              T +  A   +   G V       R + + G+  ++       + +          + 
Sbjct: 270 EYRTTSAPAEAWVHDRGLVVKRDESGRPIKMAGVMQDVTWQKKTDRAILEASEKRKELER 329

Query: 198 LFDSLDFLVWHRDQ--AGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
           + +    + + +     G + + + +  +        + +A    R L   E  + ++S 
Sbjct: 330 IVNRSPAIAFVQAVPFGGPVEFVSENVSQLGYAPEDFYSRAASFDRNLVHPEDLELVVSE 389

Query: 256 SALE------KNFCETVSTLEHGNNKSY--KIVRVLNSFGEA----GIAIDVSK----EI 299
              +        F E       G  +     +    +  G      GIA+D+++    E+
Sbjct: 390 LGRQIEEGSRSFFQEFRVLTSSGEVRWLASNVWISRDEAGAVTHVEGIALDITERKNMEM 449

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            + +      E+   L   I   D    + F N++  EL+  D   L    +  ++  + 
Sbjct: 450 ALAESERRFREMADTLPQPIFECDLAGKVTFANQTAFELYGYDRQDLEVGVNIFQVFAYE 509

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGTI 413
                +      K ++ ++        T++ T     G T H+IV S P        G  
Sbjct: 510 DREEMM------KNFQRSLHD--DKVFTYEYTGLRKEGTTFHLIVYSRPIIRDGRPVGLR 561

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               ++T +  +E     L  +  + ++  S  + V   D RI L N A           
Sbjct: 562 GTIVDITERKRVEENIKQLADLSEKLVEIGSPMIFVIDRDRRIFLWNRASEKALGYSAEE 621

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           +     +  +          S+       I      E +  +   +   + V+ +S I L
Sbjct: 622 VLGDEEVWTLLFPDGE--ERSEFLKTLDEIEMGLTAEGRRTRILAKSGEEKVISWSGIKL 679

Query: 534 PNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            + +      ++T  + T+  + E  +  + E  R   E  + F+
Sbjct: 680 EDGEGNGIGIVITAQDTTEYAKMEEEIRSEREFSRGIIEGADLFI 724



 Score = 81.1 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 68/471 (14%), Positives = 144/471 (30%), Gaps = 50/471 (10%)

Query: 51  LAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDT 110
           LAK        L        +Y  L+   + +  V +   +   I   + +    P  + 
Sbjct: 59  LAKANEALRRSL-------ERYRCLVENVDGVIYVVETTGKIAYISPSVERIFGYPAGEV 111

Query: 111 DLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLR--- 167
              +   +L       L +  +       + D +        I  +G V     + R   
Sbjct: 112 QGRNVSQFLIPEDSRYLEERLKS------ALDGIFRVSELRFIAKDGSVHHVRTYGRPIL 165

Query: 168 ---ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
              +  + GI  ++ E     + L       K+  +  D  +W+RD +   +  N  Y +
Sbjct: 166 EGHLRGIHGIMVDVTEQKKAEEALRESEERLKLAVEGADLAIWNRDLSTGEVVGNRRYAE 225

Query: 225 NTETEGIVFQKAIGESRKLFKEEIK--KRMISSSALEKN---------FCETVSTLEHGN 273
              T        +   R +  E++   +R +   A  +                   H  
Sbjct: 226 IVGTAPAEESDVLAWKRSIHPEDLPSVERALREIAAGRTDLFDLEYRTTSAPAEAWVHDR 285

Query: 274 NKSYKIVRVLNSFGEAGIAIDVSKEITVND------QLTHTYEILHNLTVAIAIFDQ--- 324
               K          AG+  DV+ +   +       +     E + N + AIA       
Sbjct: 286 GLVVKRDESGRPIKMAGVMQDVTWQKKTDRAILEASEKRKELERIVNRSPAIAFVQAVPF 345

Query: 325 NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK--ENIFSVY 382
              ++F + +  +L      F +   S D  L        +  +L  +  +   + F  +
Sbjct: 346 GGPVEFVSENVSQLGYAPEDFYSRAASFDRNLVHPEDLELVVSELGRQIEEGSRSFFQEF 405

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE----NLTVQVDLETKYNTLVKVQGE 438
           +   +  +   L +   +     S    G +   E    ++T + ++E       +   E
Sbjct: 406 RVLTSSGEVRWLASNVWI-----SRDEAGAVTHVEGIALDITERKNMEMALAESERRFRE 460

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
             D L + +      G++  +N     L+  +   L  G +I  + A   R
Sbjct: 461 MADTLPQPIFECDLAGKVTFANQTAFELYGYDRQDLEVGVNIFQVFAYEDR 511


>gi|317056869|ref|YP_004105336.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315449138|gb|ADU22702.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 508

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 4/235 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           +    E L   +++KN F+  VS+ELR+PLT I G+T+ + T        K  + +  I+
Sbjct: 241 INNMAEELSNTEQMKNEFISSVSHELRTPLTAIKGWTETVATMYGDVETFK--KGMRVIN 298

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + +  L  +V ++LD + +    + L   TI +   L E       +     I +     
Sbjct: 299 SETERLSQMVEELLDFSRIQDNRLMLQMDTIDILAELGETVLIYQERARVLGITLNYFEP 358

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             L     D+ RL Q+F  ++ NA+ +S KG TV ++A  + G+   SV + G  I ++ 
Sbjct: 359 DMLPFVYGDKNRLRQVFINVVDNAIKYSDKGDTVSVEAYEEEGEICISVSDTGIGISKED 418

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  +F        RRG G+GL++ +  I  HGG ++I S     TT+   +P
Sbjct: 419 LPRIKQKFFKA--NQTRRGSGIGLAVADEIIARHGGTLTIDSEQGVGTTVMITLP 471


>gi|257085051|ref|ZP_05579412.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|256993081|gb|EEU80383.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
          Length = 584

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 151/382 (39%), Gaps = 31/382 (8%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 226 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 279

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSI 530
              G   +N+ +       ++D   L   ++    S   E    QG   L  D  L Y  
Sbjct: 280 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRY-- 334

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   +A          D  R  +            ++++  FV +VS+EL++P+T+++GF
Sbjct: 335 LDDQSANDYQVLGIAYDLTRVRQL-----------EKMQKDFVSNVSHELKTPVTSLLGF 383

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+ L             Q++  +   +  L  L+ +IL+L+   +  +      I L   
Sbjct: 384 TETLIDGAKED-PEVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKF 441

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +
Sbjct: 442 ITEILSSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITI 500

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
             A +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L 
Sbjct: 501 SYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELL 560

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG ++I S     TT    +P 
Sbjct: 561 GGKIAIDSHLGLGTTFTITLPL 582


>gi|229015977|ref|ZP_04172938.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273]
 gi|229022194|ref|ZP_04178744.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272]
 gi|228739125|gb|EEL89571.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272]
 gi|228745337|gb|EEL95378.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273]
          Length = 463

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 111/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELADSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     ++   + L+  L  + + +  
Sbjct: 265 TPPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEKHNFFIHVQEVHLHPFLTRITEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E ++ +       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERHVTVSFTCPPSLL-VNLDEQRFEQVVVNILNNAYRHSKEHSHINISVTEEDKHIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 IKIEDEGEGIPPEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFTISLPS 455


>gi|219854352|ref|YP_002471474.1| hypothetical protein CKR_1009 [Clostridium kluyveri NBRC 12016]
 gi|219568076|dbj|BAH06060.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 657

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 171/416 (41%), Gaps = 52/416 (12%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +  ++T+++  E +  TL       +++  + +     +  I   N     L+  ++
Sbjct: 108 ILNLIRDITLELQREEEIETL----ASIVEYSEDAILSKDLNDIITSWNKGAEKLYGYKK 163

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           + +  GTHI  +    +   +     D     I  +  E   L  + + +   ++   I 
Sbjct: 164 DEI-IGTHISKLIPDET-IGDVEIILDKTKKGIEIYHHETTRLTKSGKKI---LVSICIS 218

Query: 532 PLPNAQTMLTF-----VNVTDSVRAERALTEKNEALRKADE------------------- 567
           P+ N +  +        +++D    E+ L EK E L    E                   
Sbjct: 219 PIYNREKKIIGASAIARDISDKKSKEKQLKEKYEELSAIYEELASTEEELRSNYIELEKA 278

Query: 568 ---------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                     K +F+ ++S+E+R+PL  IIG  DL+    L  +      Y+E +  SST
Sbjct: 279 KIEAENANIAKANFLANMSHEIRTPLNGIIGTIDLIS---LMEIRECTRPYLEILRNSST 335

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL++ N+ILD++ +++G ++L+     L ++L+   + I+      NI+     D  + 
Sbjct: 336 HLLDITNNILDISKIESGKIELHMKVFDLKNMLDTFIREISYACSNKNIKFTYFIDPLIP 395

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPED 733
              + D  +L QI   + +N++ F+ KG  +     +    +     FS+++ G+ I E 
Sbjct: 396 SELIGDELKLKQILINLFNNSLKFTKKGHILFKVKKISQVNEKVILEFSIEDTGTGIKEK 455

Query: 734 MCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             K +F RFV             GLGL I +  + +  G +   S++   +T +  
Sbjct: 456 FKKQIFKRFVYQQVPQNEYYSTTGLGLLISKELVKIMNGDIWFESAENIGSTFSFT 511


>gi|168036813|ref|XP_001770900.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162677764|gb|EDQ64230.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 472

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 125/272 (45%), Gaps = 13/272 (4%)

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            VL     P+ ++          D      A     EA+  A+  K+ F+  +S+ELR+P
Sbjct: 41  RVLHVRSFPVSSSSAHGRLWLYEDVTTDREA----CEAIEAANRAKSQFLAMMSHELRTP 96

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +T ++G  DLL  +K   L  +Q + V+ +  S+  L+ ++N+ILD   ++AG + L   
Sbjct: 97  MTGVLGMLDLLHLTK---LEPQQQELVKIMQESAEGLMQVINNILDFCKMEAGRLFLEEI 153

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
              L DL+ +V      K+ E  +R  +  + G   +   D  RL QI   ++SNA+ F+
Sbjct: 154 DFSLGDLVEQVATLYEKKLQEKGLRFVINGAAGATVAVRGDPVRLRQIIVNLVSNAIKFT 213

Query: 703 SKGSTVILKAAR---DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
            KG T+ L        N      V + GS I +++  ++F    + A R    G GLGL+
Sbjct: 214 EKG-TITLSWRYVSGKNHYLEVKVADTGSGIAKELLGTLFTASQAGAPRRDSSGTGLGLA 272

Query: 760 IVESFINLHGGHVS-ISSSDEGVTTINCRIPS 790
           I +  + L  G +  + S     T +   +P 
Sbjct: 273 ICKGLLELMKGKMLPVISEMGKGTIVTFVLPL 304


>gi|159184266|ref|NP_353375.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
 gi|159139593|gb|AAK86160.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
          Length = 746

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 153/368 (41%), Gaps = 23/368 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D+  +      +  E  + + + V +   + RI  +N  FR +             I   
Sbjct: 106 DVRLRQTQNRSLIAEMQESMGDIVVIRNMNRRIVEANRVFREMTGCTSPEGLSCEEIGIA 165

Query: 484 AATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                R +  + +    F   I S+ D       T +L S  ++  SI      + +   
Sbjct: 166 FRPGDRVHAYDVEIATPFGQRIFSWHDVV-----TRDLASSRLMISSIARDVTEERLALA 220

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                 +RAE+A           D  K   +  VS+E+R PL+ ++G   LL  +K   L
Sbjct: 221 EREDARLRAEKA-----------DAEKARLLATVSHEIRLPLSGMLGMNHLLSQTK---L 266

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q  Y++ +  S   L+ LV D+LD +T++AG  +LN     L  L+  + + +A + 
Sbjct: 267 NQEQRNYLDGMKQSGQSLVQLVEDLLDYSTMEAGRFRLNPRAENLRRLIESIVEMLAHRA 326

Query: 663 HENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
           HE  I I   ++         D  RL Q+   ++ NA+ F+  G  V ++A   +G+   
Sbjct: 327 HEKGIEIASFVTPDVPDYLDFDPARLRQVLFNLIGNAVKFTQVGGVV-IRARMVDGELQI 385

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEG 780
           +V++ G  + E     +F  F       QR  G GLGL+I    +   GG++++SS    
Sbjct: 386 TVEDTGPGMSEAEQARIFGEFEQAGPLSQRSAGTGLGLAISARIVREFGGNLTVSSRRGE 445

Query: 781 VTTINCRI 788
            +T     
Sbjct: 446 GSTFKLVF 453


>gi|296451603|ref|ZP_06893337.1| probable two component histidine kinase [Clostridium difficile
           NAP08]
 gi|296878849|ref|ZP_06902849.1| probable two component histidine kinase [Clostridium difficile
           NAP07]
 gi|296259521|gb|EFH06382.1| probable two component histidine kinase [Clostridium difficile
           NAP08]
 gi|296430121|gb|EFH15968.1| probable two component histidine kinase [Clostridium difficile
           NAP07]
          Length = 618

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 164/393 (41%), Gaps = 31/393 (7%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDH-LSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GTI + +N+         YN+  K   + I+H + E +      G     N  F +L   
Sbjct: 216 GTIGIIDNIIYSGYSNKNYNS--KDLMKMIEHSIPENMFYKDVYGNYIGFNSGFLNLACM 273

Query: 470 EENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIIT-----SFDDERKSLQGTLELLS 522
            +  L       I    A   + +    G      ++T     S +DE K ++ T     
Sbjct: 274 NKEELLGKNSYKISEEEALIDKIFESDKGVVESKKVVTFELNISMNDENKCIEITKRPFF 333

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           DS      I       + T  +++   R E  +          D+ +  F  ++S+ELR+
Sbjct: 334 DSYGSVIGI-------IGTAKDISRRKRLEEEM----------DKTRMEFFANLSHELRT 376

Query: 583 PLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           P+  I     ++  K + L   N    + +  I  +   +L LVN+++D   + +G +  
Sbjct: 377 PINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQNGNRILRLVNNVIDFTKIQSGYLDF 436

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 +   + E+  S+A    +NNI++   ++ +  S + D ++L +I   +LSN + 
Sbjct: 437 KPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIEEFSMLFDSEKLERIILNLLSNGIK 496

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           ++ +   + +     +  F   + ++G  IP++    +FNRF    +    + +G G+GL
Sbjct: 497 YNKEDGKINIFLYVKDNVFNMKISDSGIGIPKEKIDKIFNRFEQIDNELSYRVKGSGIGL 556

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           S+V+S + LH G +S+ S     +     +P +
Sbjct: 557 SLVKSLVELHEGSISLKSQLGVGSEFIVSLPVR 589


>gi|255655601|ref|ZP_05401010.1| putative two-component histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 618

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 164/393 (41%), Gaps = 31/393 (7%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDH-LSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GTI + +N+         YN+  K   + I+H + E +      G     N  F +L   
Sbjct: 216 GTIGIIDNIIYSGYSNKNYNS--KDLMKMIEHSIPENMFYKDVYGNYIGFNSGFLNLACM 273

Query: 470 EENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIIT-----SFDDERKSLQGTLELLS 522
            +  L       I    A   + +    G      ++T     S +DE K ++ T     
Sbjct: 274 NKEELLGKNSYKISEEEALIDKIFESDKGVVESKKVVTFELNISMNDENKCIEITKRPFF 333

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           DS      I       + T  +++   R E  +          D+ +  F  ++S+ELR+
Sbjct: 334 DSYGSVIGI-------IGTAKDISRRKRLEEEM----------DKTRMEFFANLSHELRT 376

Query: 583 PLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           P+  I     ++  K + L   N    + +  I  +   +L LVN+++D   + +G +  
Sbjct: 377 PINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQNGNRILRLVNNVIDFTKIQSGYLDF 436

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 +   + E+  S+A    +NNI++   ++ +  S + D ++L +I   +LSN + 
Sbjct: 437 KPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIEEFSMLFDSEKLERIILNLLSNGIK 496

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           ++ +   + +     +  F   + ++G  IP++    +FNRF    +    + +G G+GL
Sbjct: 497 YNKEDGKINIFLYVKDNVFNMKISDSGIGIPKEKIDKIFNRFEQIDNELSYRVKGSGIGL 556

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           S+V+S + LH G +S+ S     +     +P +
Sbjct: 557 SLVKSLVELHEGSISLKSQLGVGSEFIVSLPVR 589


>gi|149915177|ref|ZP_01903705.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
 gi|149810898|gb|EDM70737.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
          Length = 851

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 171/393 (43%), Gaps = 18/393 (4%)

Query: 412 TIWMFENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
            +W+   L T+      +    +      +D   + + V  PDG I  +N A RS++   
Sbjct: 201 LMWLLWRLYTLYRHRAFQNRITLNRLSTILDTSEDAILVVRPDGTIIETNTAARSMFG-P 259

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
           +N  +  ++I  +          +   D     +   + +   L    +  S + +E S 
Sbjct: 260 DNTETGKSNIYGVLYRQEEDRTLTAISDEPLGDVREGEADSTPLVARRQDGSLAAVELSA 319

Query: 531 I---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                  +   +    +++D + AE  +    +     ++ K  F+  +S+E+R+PL  I
Sbjct: 320 NVAARSVDEVWVCFIRDISDRLAAEAEVQAARDKALSNEKAKAHFLGRISHEMRTPLHGI 379

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G  DL+ ++    L+ +Q++Y + + +S  +LLN +ND LD+    A  + L  +   +
Sbjct: 380 LGTLDLMDST---PLSPEQTRYSDIMKSSGQVLLNQINDALDITRSSAEPLPLVETVFDV 436

Query: 648 NDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
             L+ ++  S       +   I +   +  +G+ + DR R+ Q+   ++SNA+ F+ +  
Sbjct: 437 EQLIEDIATSQGAVAEAHGNTIDLHVQNAPVGAVLGDRDRVQQVLLNLVSNAIKFT-RNG 495

Query: 707 TVILKAAR------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
            + ++AAR       +  F   V + G  I ED  + +F+ FV   ++   +  G GLGL
Sbjct: 496 RISIEAARVGLHGKHDNIFEIQVSDTGIGIAEDDVERIFDDFVRVISSDGERTEGTGLGL 555

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            I  + +   GG + + S     +    R+P +
Sbjct: 556 GIARNLVLQMGGDIGVESLLGEGSVFWVRLPLR 588


>gi|83815466|ref|YP_444999.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756860|gb|ABC44973.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
          Length = 322

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 125/294 (42%), Gaps = 4/294 (1%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           ++AA         + LQG L  +       +  P            + +  R  ++L  +
Sbjct: 22  VYAASHVWLHRRLRHLQGVLHEIRTHEF-AAETPPSGPHGDELSTLLWEVYRTGQSLETE 80

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            + L++ +  +  F+ +VS+EL++P+ ++ GF + L    L    S    +++ I   + 
Sbjct: 81  IQELKEMESYRREFIGNVSHELKTPIFSVQGFAETLLDGALDD-ESVNRTFLKKILHHAN 139

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L +L  D+  +  ++   + ++     + +L +   +S+  +  E  I  +      L 
Sbjct: 140 RLDSLARDLSTITKIETDELDMSNEAFNVAELFDAAIESVEIRAEEKGIMPRQRVAPDLP 199

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               D  RL ++   ++ NA+ ++  G TV L+A   N + +  V ++G  I  D    +
Sbjct: 200 QIYGDFDRLRRVLVNLVDNAIKYNQDGGTVQLEAESQNDEVVIRVVDDGIGISPDHLPRL 259

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             RF        R   G GLGL+IV+  +  H   + + S+ E  +T    +P+
Sbjct: 260 TERFYRVDKSRSRNQGGTGLGLAIVKHILAAHDRELHVESAPEEGSTFYFTLPT 313


>gi|163939207|ref|YP_001644091.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163861404|gb|ABY42463.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 466

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +      LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 LAMILITIWIGRKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   +  E N+RI    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLNTYELQFVEKNLRISTNLNPEII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +I+   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDREHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRIESEKGKGTTVSIKL 457


>gi|239626587|ref|ZP_04669618.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516733|gb|EEQ56599.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 497

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 149/330 (45%), Gaps = 11/330 (3%)

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVL-- 526
           +  L        I+      +  +    L A I +    +R   S+   +  +S  +L  
Sbjct: 168 DMVLRLAVPYSGISEYLPMLFPAALVSFLAALICSLVTTQRFVSSVTRPMRDISGKMLQV 227

Query: 527 --EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             +Y+ +     Q     V         + + E    + K  +I+  F  + S+EL++P+
Sbjct: 228 KGDYTELHFDRYQYPEINVIAETITNMSQNVKEYLSQIEKEKQIRQEFFSNASHELKTPI 287

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T+I G+ +LL++  +   + K   +   I   +  +  L+NDIL ++ ++A   ++  + 
Sbjct: 288 TSIQGYAELLESGLIQDESMKM-DFARRIKKEAVNMTGLINDILMISKLEAKDAEVVVTD 346

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + ++ LL E+  S+  +   + + +   +D +     A+ Q++ ++ + +LSNA+ ++  
Sbjct: 347 VRISVLLEEIMDSLKPQAASSQVFLH--ADCQPLCIRANVQQMKELLTNLLSNAVKYNHP 404

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
           G  V +      G+ +  V++NG  IPE+    +F RF         ++ G GLGLSIV+
Sbjct: 405 GGQVWINIREQGGNMVIRVRDNGMGIPEESLDRIFERFYRVDKGRSRKQGGTGLGLSIVK 464

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +N + G + ++S  E  T     IP  +
Sbjct: 465 HIVNFYQGTIHVTSKLEQGTEFVVTIPMDQ 494


>gi|226355985|ref|YP_002785725.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226317975|gb|ACO45971.1| putative histidine kinase, classic; putative membrane protein
            [Deinococcus deserti VCD115]
          Length = 1112

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 126/832 (15%), Positives = 272/832 (32%), Gaps = 76/832 (9%)

Query: 13   GIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKY 72
            G  + +       + G + G L   +      +  R              ++     +++
Sbjct: 299  GRGLSSALPMIAVILGLLIGGLSYWMTQA--QVNGRRRAEALNQTLVEARTQQAQARAEF 356

Query: 73   HSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIP-----QTDTDLLSFENWLKFHH-YIK 126
             ++        +  D       +   +      P           L  +  L+    +  
Sbjct: 357  EAIFQSMQDAAVFTDAGGHIRRVNRAMGTLFRQPLQHLMGQPLAKLHLDRRLESRSTFQA 416

Query: 127  LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
            L+      R +G  F    E+Q       EG + GS   +R         ++ E     +
Sbjct: 417  LTTPYR--RDDGTIFS--GESQRSEVRSEEGELLGSLEVVR---------DVTERMEAER 463

Query: 187  KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKE 246
             L         + DS+  ++W  D  G++ + N  Y+    T  I       +    +  
Sbjct: 464  ALQGAQRRAGEILDSIPHVLWVSDSGGEVTYLNAQYRGRFGTAHIRVH-LDSQDHGSYDA 522

Query: 247  EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE----AGIAIDVS----KE 298
              ++      A +      +  +        ++  V N  GE       A D+      E
Sbjct: 523  LWRRAHALGGASQAEVRLRIGDVSRW--HVLRVNPVRNERGEIVEWVASATDIHDRLVAE 580

Query: 299  ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA---FLATNPSND-- 353
                        +L  +   + + D      + NR + E    + A   FL     ND  
Sbjct: 581  RLAQHNEQRYRGVLEGMPQIVWLTDAQGAPSYFNRRWAEYVGPERAVQGFLQLLHPNDRG 640

Query: 354  ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
            E      +A +  +    +         Y++  +         G+ +  + TS      +
Sbjct: 641  EYQARWAAALETQQPFEAEHRLLGADGRYRAFVSRGSPVRDATGRIIEWVGTSTDVDDPV 700

Query: 414  W------MFENLTVQVDL------ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +      +  ++T ++          +     +      +  +E  AV+         + 
Sbjct: 701  FAETAARLLAHVTERLSALPGNRRRLRALRYREALDLLTERFAEAAAVWTVPEEPMAVSQ 760

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF---AAIITSFDDERKSLQGTL 518
            A  +  +     +        +    +++  +           A++        +  G L
Sbjct: 761  ALPAWSQGPFREVFAAQVRLAMETGEAQFPADQALLHQIGVSEALLIPLLSRDGTRFGVL 820

Query: 519  ELLSDSVLE------YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS- 571
             L     L+       S +    A  M        ++ A+R L   N++L +  + +   
Sbjct: 821  GLAFRQPLQDRDHELASELAQRFAAAMENDALRARALEAQRDLELLNQSLEERVQRRTRE 880

Query: 572  ----------FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                      F   VS++LR+PL +++GF DLL+     +L+ K ++Y+  IS +ST + 
Sbjct: 881  LEATARELEAFSYSVSHDLRTPLRHVVGFADLLRKDLGDNLSPKSARYLSVISEASTRMS 940

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             L++D+L  + +  G  +L    + L  L+      +        I+ ++    +L +  
Sbjct: 941  QLIDDLLAFSRM--GRQELRNVPVDLTSLIRASWHGLEPDRQGREIQFRL---DELPTVP 995

Query: 682  ADRQRLLQIFSKILSNAMDF--SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             D   L  +F+ +LSNA+ +  +   + + +     +G     V++NG          +F
Sbjct: 996  GDPALLGLVFTNLLSNAIKYTRTRPQAIIDVTGLVQDGQVTVQVRDNGVGFDMRYADKLF 1055

Query: 740  NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              F       +  G+G+GL+ V   +  HGG V+  S  +   T    +P +
Sbjct: 1056 GVFQRLHRAEEFEGIGIGLANVRRIVTRHGGGVTADSQPDQGATFTVTLPLE 1107


>gi|28869414|ref|NP_792033.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852655|gb|AAO55728.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331018585|gb|EGH98641.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 641

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 118/251 (47%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++     +Q
Sbjct: 241 EQQRSVAQLIQTREEAERANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TDEQ 297

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 298 SEYATLATESTEHLLKVINDILDFSRIERDALQMEGIAFNLAELVSVSTHAFNHSALQRK 357

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           + +++      +  + + D  R+ QI   ++ NA+ F+ +G  V ++A     D+    F
Sbjct: 358 LLLELHVQPGLEAMTVIGDPTRIRQILVNLIGNALKFTEEG-KVCVEADWLMLDDEQLRF 416

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V ++G  I  +  +S+F+ F         +  G GLGL I        GG +   S 
Sbjct: 417 TCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARKLAERMGGTLYAESV 476

Query: 778 DEGVTTINCRI 788
           +   +    +I
Sbjct: 477 EGAGSAFTLQI 487


>gi|194015646|ref|ZP_03054262.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
 gi|194013050|gb|EDW22616.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
          Length = 471

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 8/253 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           M    N  +  +  R+  + +  L K ++ +  F+ +VS+ELR+PL+ + G+ + ++   
Sbjct: 214 MAVTKNGDELNQLSRSFNKLSSTLEKVEQHRREFLANVSHELRTPLSYMKGYAEGIEEGI 273

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +      Q + +  I   +  L  LVND+LDLA ++     L    IV   L+++V   +
Sbjct: 274 ID-----QKKGMHIIQDEAARLSRLVNDLLDLAQLEGDSYPLTMEPIVFAQLIHDVLDQM 328

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           A   ++ +I +K   D        D  RL Q+   +L NA+ ++  G +V ++       
Sbjct: 329 AFIANQKSIYLKRTLDED-CIVYGDSDRLQQVVRNLLDNAIHYTPSGKSVSIELLVHQHK 387

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
               V + G+ IP++    V  RF     A   +  G GLGL+IV   +  H G   I S
Sbjct: 388 AELRVTDEGNGIPKEDLPHVSERFYRVNKARTRKDGGSGLGLAIVYQIMKKHHGTFDIQS 447

Query: 777 SDEGVTTINCRIP 789
                TT   ++P
Sbjct: 448 EPGYGTTAIIQLP 460


>gi|326693644|ref|ZP_08230649.1| histidine protein kinase; sensor protein [Leuconostoc argentinum
           KCTC 3773]
          Length = 451

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 161/391 (41%), Gaps = 33/391 (8%)

Query: 407 NPRGGTIWMFENLTVQVDLETKY-NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           +P    I  F  +  +++   +     V      +  L  GV        I + N     
Sbjct: 87  SPYYALIQQFNVMQHRIEQARQAAQRDVTNYQSLLASLPVGVININRAHTIDVFNETAAD 146

Query: 466 LWKTE--ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LS 522
           L   +  E  ++    IR                   + +IT   + +K+ Q  L L ++
Sbjct: 147 LLGIQRPETPIAESMVIRQF---------------TLSELITQTFNTQKNQQSILNLQIN 191

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
             + +Y +  L +   +     +         +     ++ + + +++ F+ + S+EL++
Sbjct: 192 GDMKQYEVSTLYHQGNLKHAEVMI--------IIYDLTSVLQVERMQSDFLANASHELKT 243

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT I GF + L+    G+  + +  +++ ++  +  L +LVNDIL L+ V      +  
Sbjct: 244 PLTAITGFIETLQ-GPAGADQATREMFLDIVAQEAKRLSSLVNDILSLSRVQQKREAVQT 302

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + ++D++ E  Q +        ++++             +  +  I   ++ NA+ ++
Sbjct: 303 ELV-IHDMVAEQWQHVMPLAETKAVQLRNDVPDDFI-IRGLKTDVEMILQNLIVNAVKYN 360

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLS 759
            +G  + + A +D+  +  +VK+ G  IP +    +F RF       QR+   G GLGL+
Sbjct: 361 VQGGDIHVTAYKDHQHWQLNVKDTGIGIPTNQQSRIFERFYRGDESRQRKIASGTGLGLA 420

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           IV   +N H G + + S     TTI+  +P 
Sbjct: 421 IVNEIVNKHNGEIKVQSQVAVGTTISVTLPL 451


>gi|300769974|ref|ZP_07079853.1| sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762450|gb|EFK59267.1| sensor histidine kinase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 542

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 162/350 (46%), Gaps = 29/350 (8%)

Query: 460 NPAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N A R  WK +         +  I      S   +     ++ A ++T+   E K L   
Sbjct: 38  NEALRLCWKEDIAIALIDVQMPEINGFEFVSILKSNPKTREIIAIMVTAISKEDKYL--- 94

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVT--------------DSVRAERALTEKNEALR 563
           ++ L+   ++Y   PL    T+    +                +  ++++ L    E   
Sbjct: 95  IQGLNSGAVDYLYKPLSPEITIAKVKSFMQQVLTQLQIKEKNAELEQSKQELIRSKEEAE 154

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A + K  F+ ++S+E+R+P+  I+G T +L++S   +L+S+Q  +V  + ++S  LL +
Sbjct: 155 QARKSKEIFLANMSHEIRTPINGIMGITQMLRSS---TLSSEQKDWVNRLDSASHSLLLI 211

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +NDILD++ +D+G+MKL +  +V  DL +++ +    K    N+  ++  D  L ++V  
Sbjct: 212 INDILDISKIDSGMMKLEFENLVFQDLFDDLNKIFKIKAANKNLEFEMNIDSDLPTYVKT 271

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD-FIFSVKNNGSSIPEDMCKSV 738
           D  RL QI S  +SN + F+ KG     + +   +DN     FSVK+ G  I  +    +
Sbjct: 272 DSLRLQQILSNFISNGLKFTEKGKVTLSIRILEVKDNSYFIRFSVKDTGIGIRAESLNKI 331

Query: 739 FNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           F  F         +  G GLGL+IV+   +L  G V  +S     +  + 
Sbjct: 332 FLAFEQADDGITKKFGGTGLGLAIVKRLADLFNGSVDATSVYNEGSEFSF 381


>gi|254446207|ref|ZP_05059683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260515|gb|EDY84823.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 664

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 19/309 (6%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTMLTFVNVTDSVRAERAL 555
           D        F DE  SL  +   + D + E   S+  +      L      D      AL
Sbjct: 208 DYSKRAEKRFRDEVGSLVDSFNSMLDKISERDTSLREVNINLEKLVEQRTKDLRIQNLAL 267

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E  E    A + K  F+   S+ELR+PL  IIG+ + ++ ++    N   S  +  I  
Sbjct: 268 QEAMETANAASKAKTEFLATTSHELRTPLNPIIGYVEKIQRAQ---PNGPHSNDLRLIKQ 324

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  LL L+ DILD + +++G +KL    I + +L   V + ++ +  +  + +    + 
Sbjct: 325 SAEQLLRLIEDILDFSRIESGTLKLENDQIDVEELCESVVKLLSEQAEQKGLDLNYSFNE 384

Query: 676 ------KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVK 724
                        D  RL Q+   + +NA+ F+++GS V +K +      +  D I  V 
Sbjct: 385 NRELGMPEKDISIDAGRLRQVLLNLTNNAIKFTNEGS-VTIKCSLNHDPSEKADLIIEVI 443

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I       +F  F         +  G+GLGL+I +  +   GG ++  S     +
Sbjct: 444 DTGIGIDSQDQDKLFKPFSQLDSSWTREYGGMGLGLAICQRIVKAMGGRLTCFSEIGRGS 503

Query: 783 TINCRIPSK 791
             + +IP +
Sbjct: 504 RFSAQIPVE 512


>gi|218892066|ref|YP_002440933.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|254235061|ref|ZP_04928384.1| hypothetical protein PACG_00942 [Pseudomonas aeruginosa C3719]
 gi|126166992|gb|EAZ52503.1| hypothetical protein PACG_00942 [Pseudomonas aeruginosa C3719]
 gi|218772292|emb|CAW28074.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 881

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 122/726 (16%), Positives = 246/726 (33%), Gaps = 83/726 (11%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG-----RVSGSCAFLRILSLDGIYSELA 179
           + L +   KL++  Q+     E+    + +  G      V       R  +L     EL 
Sbjct: 30  VALEEERHKLQRINQALIGRIESSAAQSDEAYGAFQYSVVLAEQVRERTDALSQTMLELK 89

Query: 180 E----TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
                 +    +            +S+       D    I+  N  ++       I  + 
Sbjct: 90  ASNQLLSDARLRAETAHQHLLDAIESISDAFVLFDPQQRIVLFNERFR----ALWIDSRA 145

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAID 294
            IG   +  +     R       E+   +  +     + +  ++  R     G A +  D
Sbjct: 146 RIGPGMRRAELHRLARSGGLIVEEQRGGDQQTLYRLRDERWLRMSERPTRDGGLAVLYSD 205

Query: 295 VSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           V++         E  +  +       + NL+  +A+   +  L+  NR F+EL  +  A 
Sbjct: 206 VTEIKLSETARREQALAQKSHLLQRAVDNLSQGVAMVGADGVLELWNRRFLELCGL--AP 263

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +A + +  E++         P   +            + S        L +G+ L +   
Sbjct: 264 IAGHRAFAEVMAESELPLLTPRSQD-----------SQGSPLSAREQRLFDGRVLEIRTH 312

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P GG +  F ++T +           +      D +   +A    +   + +N  +  
Sbjct: 313 ALPTGGFVNTFTDITERYRHAEALRASERWIRLITDQVPALIAYLSDELVYEFTNKVYEE 372

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            ++     +  G  +R++         E       A    +F+    +L G    +  S 
Sbjct: 373 WYRWPSGSML-GRCLRDVHGAEHCRRLEPYFERALAGESVTFEIAETALSGEERYMQRSY 431

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------------- 565
           +         A   +   ++T+  R   AL +  + L +                     
Sbjct: 432 VPNRQADGRVAGLFVLIRDITERRRTAEALHQAYQNLEQRVRERTAELTTLNDQFKREIH 491

Query: 566 -------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                              +  K  F+  VS++L  PL     FT  L+     + +++ 
Sbjct: 492 ERSQVEARLREAKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALQERGSAARDNEA 551

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  IS S   + NL+  ++D++ +DAG++  + +   L +LL  +            
Sbjct: 552 --LVNNISHSLEDVENLLGTLVDISKLDAGVITPDIAPFELGELLGNLAAEYRQVAASEG 609

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+  ++ G L    +D+Q L +I   +LSNA+ ++ +G  V+L   R        V + 
Sbjct: 610 LRLDFVACGAL--VRSDQQLLARILRNLLSNAIRYTPRG-RVLLGCRRHRQRLSIEVWDT 666

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F     +   Q RG+GLGL+IV+    + G  V + S     +  
Sbjct: 667 GVGIAADKLGEIFQEFKRGESQRCHQDRGLGLGLAIVDKIARMLGHRVRVGSLPGKGSCF 726

Query: 785 NCRIPS 790
              +P 
Sbjct: 727 AIEVPL 732


>gi|323492426|ref|ZP_08097574.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546]
 gi|323313213|gb|EGA66329.1| sensor/response regulator hybrid [Vibrio brasiliensis LMG 20546]
          Length = 569

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 128/278 (46%), Gaps = 11/278 (3%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +E   D     S + L                R + A         +++     FV  +
Sbjct: 161 VVESGIDRDFVISQVMLVGELLCSAISRQMIVTRHQEA----RARAEESERSTKEFVAMI 216

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           ++ELR+PL  ++G  +LL  +   SLN +Q   +  ++ S  +L +++NDILD + ++AG
Sbjct: 217 NHELRTPLNGLLGSAELLADT---SLNEEQQTLLSNLAHSGDLLRHIINDILDFSKMNAG 273

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
           +M+L  S     +L N +      K  E  I   +    +L + F+ D +R+ QI   ++
Sbjct: 274 MMELIPSQFSWVELSNMIDGIFRPKAQEKGIEFTIEQTNQLPAAFIGDFERIGQIVVNLV 333

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
            NA+ F+++G  V L A  D      S+ ++G  I  ++   +F  F+      +R   G
Sbjct: 334 GNAIKFTAQGE-VKLVAEWDVDCLKMSIIDSGVGISNELHDQLFTPFIQVDRSAKRNFEG 392

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+I ++ + L  G +S++S     +  N  IP K
Sbjct: 393 TGLGLAICKNLVELMLGEISLTSELGKGSCFNVTIPLK 430


>gi|269926551|ref|YP_003323174.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790211|gb|ACZ42352.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 486

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 135/319 (42%), Gaps = 7/319 (2%)

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L  G  +  +    +R           A++         + Q  L   S  V +   I 
Sbjct: 148 YLQVGRSLEPVDRILARLKTILILGGAIASVSAGVLAYFLAWQA-LRPFSRIVEDTRKIG 206

Query: 533 LPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           + + ++ +     V +  R  R        L KA E +  FV   S+ELR+PLT I G  
Sbjct: 207 VDDLSKRLPADYGVLEVNRLARTFNSLLNRLEKAFESQKRFVADASHELRTPLTTIRGNA 266

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +++      +L     + +E I    + L  LV+++L LA  DAG + L Y  + L+D++
Sbjct: 267 EVMLMDP--NLPPDVREGLENIRGEVSRLSRLVSNLLMLARADAGQVNLTYRPVNLHDVV 324

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            +  + + T +    + +++  + ++     D  +L Q+   +L NA  ++ KG +V + 
Sbjct: 325 LDTLKQMHTSID--GLSVRLEREDQV-MVSGDADQLKQVMLNLLDNAFKYTPKGGSVYVS 381

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
              +       +++ G  I       +F RF  ++   +  G GLGLSI +  +  H G 
Sbjct: 382 VYAEPPWAKVEIRDTGIGIAPSELTRIFERFYRSSKAPKGAGSGLGLSIAQWVVRAHNGR 441

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++SS     +T    +P 
Sbjct: 442 ITVSSKQGEGSTFTVWLPL 460


>gi|120603325|ref|YP_967725.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563554|gb|ABM29298.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 667

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 160/373 (42%), Gaps = 36/373 (9%)

Query: 436 QGETIDHLSEGV--AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
              T++ L   V       DG I  +    R      + RL  G  +       +++   
Sbjct: 19  LRRTLEGLGYIVPAVETDADGAIDAA-KRLRPDLVLMDIRLRRGDGVDAAHVITNQF--- 74

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
               D+    +T+F DE  +L   ++        + + P    +   T        RA R
Sbjct: 75  ----DIPVVFLTAFSDE-ATLSRAMKA---GPFGFLVKPFAERELYSTIEVALLKHRAVR 126

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            + E  +A   A   K SF+  +S+E+R+ L  I+G T+L+  +    L+ +Q + +  +
Sbjct: 127 EIDEARQAAEHASLAKTSFLAGMSHEIRNTLNGIVGMTELVLDT---PLSGEQRESLNTV 183

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            ASS  LL L++D+LD + ++A  ++L      L+ LL +V Q+  ++    NI +    
Sbjct: 184 LASSETLLTLLHDVLDFSRLEARQLRLVERPFSLDRLLKQVVQASRSEAERKNISLDFRV 243

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG-------------- 717
              +      D  RL Q+ + ++ NA+ F+ KGS +I + A   +               
Sbjct: 244 TPDVPDRLTGDATRLTQVLANLVGNAVKFTHKGSVIIEVSAIPQDQTLLESLFPDGPPSS 303

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSI 774
              +FS+++ G  I ++  +++F  F   A     +  G GLGL+I  + + + GG +  
Sbjct: 304 LTLLFSIRDTGIGIADEHLRTIFEAFSQGAEETVQRYGGTGLGLAICRNLVEIMGGSIWA 363

Query: 775 SSSDEGVTTINCR 787
            SS+   ++ +  
Sbjct: 364 RSSEGQGSSFHFT 376


>gi|332705480|ref|ZP_08425558.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula
           3L]
 gi|332355840|gb|EGJ35302.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula
           3L]
          Length = 606

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 88/413 (21%), Positives = 157/413 (38%), Gaps = 52/413 (12%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +   +DL+T +    +  GE +      V  + PD R+      +             
Sbjct: 196 RQIRRTLDLDTIWQQTAQSLGEALQVSRCLVCYYKPDARVTKVQAEYCQ----------- 244

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
              +R++A       +E        +      +    L G  E LS  V+  S    PN 
Sbjct: 245 -KPLRSMAKQLLPLDSEPYLEQALTSQEPLLVEHI--LPGEWEQLSVLVVSTSYKDEPNG 301

Query: 537 -QTMLTFVNVTDSVRAE---------------------RALTEKNEALRKADEIKNSFVQ 574
              +    +      AE                     + L   +E   +A   K+ F+ 
Sbjct: 302 LICLQQCGDRRQWSAAEIKLVGELAEQVGTAIAHGTLYKELEIASERAEEASRHKSDFLA 361

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           + S+ELR+PL  +IGF  L+    +     +Q  +++    S+  LLN++NDILD+A ++
Sbjct: 362 NTSHELRTPLNGMIGFLKLVLDG-MADDPQEQRDFIQEAYNSALHLLNIINDILDIAKIE 420

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG--KLGSFVADRQRLLQIFS 692
           AG M+L  + + L+ L  +V+     +    N+ +++             + QRLLQ+  
Sbjct: 421 AGKMELELAPVELDSLFRKVEDFTINQAQLKNLSLRIEMPDVYDGIVMYGNYQRLLQVML 480

Query: 693 KILSNAMDFSSKGST----------VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            ++ NA+ F+ +G            +  K     G     V + G  +  D    +F  F
Sbjct: 481 NLVGNAIKFTDEGGVTVSAEVIRKKITFKGTEFPGLVKVRVADTGIGVSLDQQDRLFQTF 540

Query: 743 --VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPSKE 792
             V  +   Q  G GLGL I +  I   GG V+  S  +   +T+   +P  +
Sbjct: 541 TQVDGSRTRQYGGTGLGLVISQKLIETMGGVVNFFSMGENLGSTVTFTVPLYQ 593


>gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1334

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 2/225 (0%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            ++ K  F  ++S+E R+PLT I+   ++L       +       +  I  ++  +  L+ 
Sbjct: 812  NQSKLRFFTNISHEFRTPLTLIVSQLEMLMER--SDIQPLVYSKLVNIHRNTLRMKRLIT 869

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            ++LD    + G  K  YS   +   L+E+  S         I ++ ++  +      D  
Sbjct: 870  ELLDFRKQEQGFEKFKYSKQNIYSFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFDVV 929

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            +L ++   +LSNA  ++  G T+ L         + +V + G  I E+    +F+RF   
Sbjct: 930  QLEKVIYNLLSNAFKYTPLGGTISLSVQEYGNSVMVTVSDTGVGIAEESLDKIFDRFYQV 989

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 ++G G+GL++ +S I  H G +S+ S +   TT    +P 
Sbjct: 990  DSMNNQKGTGIGLALAKSIIEAHKGKISVRSMEGKGTTFVVELPL 1034


>gi|297538562|ref|YP_003674331.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp.
           301]
 gi|297257909|gb|ADI29754.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp.
           301]
          Length = 1148

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 6/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT L    +    + +  L    +   +A++ K+ ++  +S+ELR+PL +I+G+  LL
Sbjct: 661 NRQTGLLQREIELHQKTDAELQLARQVADQANQAKSRYITGISHELRTPLNSILGYAQLL 720

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                 S+   + Q +  I  S   LL+L+   LD+A ++ G +  +   +   + + ++
Sbjct: 721 --DNDTSIPDSRLQAIRVIRRSGEHLLSLIEGTLDIARIEGGKLTFDIKPLRFPEFIKQI 778

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     I        +L   V AD++RL QI   IL NA+ F+  G  V  +  
Sbjct: 779 VSMFELQARNKGINFAYEVTSELPKMVRADQKRLSQILINILGNAVKFTQHGGVV-FRVQ 837

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGH 771
                    +++ G  I      SVF  F   +        G GLGL+I +    L GG 
Sbjct: 838 YARELVQIEIEDTGPGIQTHEIDSVFEPFARGSAAANDRIGGTGLGLTISKLLTQLMGGE 897

Query: 772 VSISSSDEGVTTINCRI 788
           +S++S     T    ++
Sbjct: 898 ISVNSVVGKGTIFKIKL 914


>gi|295320054|gb|ADG00432.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 657

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 201/487 (41%), Gaps = 15/487 (3%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE------IDLAFL 346
           ID+ ++  + D + +   +++N++  I +FD++  L   N++  ++ E      +D+  +
Sbjct: 170 IDILRKKEL-DYIKYLNNVINNISEGILVFDKHSKLILWNKAIEQIGEMKIKKILDIEEI 228

Query: 347 ATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                   L +      K+ +   ++ +  +++       +T+K  +   N  +  ++  
Sbjct: 229 INEYDIYILDDHKNMKYKIKKMNPDYNSSVKDLLLKLVKKDTNKIKYIEYN--SNPIMDE 286

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFR 464
           +N    TI   +N+T  ++ +       +     +D +   +AV   PD   KL N  + 
Sbjct: 287 NNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYKLVNERYE 346

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L +    +   G    N      R     +  ++   +      E         L S  
Sbjct: 347 ELVERLHTKKIKGNLFGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSGE 406

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
              + +  + +       V++  S   E    + N  L K +++K+ F   +S+ELR+PL
Sbjct: 407 ERFFKVRYIYHETKNKKRVHIHGSDVTEE--FKSNLELEKVNKLKDEFFTIISHELRTPL 464

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I     L        +N    + ++ I+ ++  LL L+N+ILD++  +AG + LN   
Sbjct: 465 TIIYSSLQLAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNEY 524

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             +      +  SI    +  NI +   +  +      D+ +  +I   +LSNA+ F+ +
Sbjct: 525 FDIVLETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTPE 584

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
             ++ +       +F   VK+ G  IP++    +FNRF    ++      G G+GLS+V+
Sbjct: 585 NKSIYVTLKIYKNNFKLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLVK 644

Query: 763 SFINLHG 769
                HG
Sbjct: 645 KISGSHG 651



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 418 NLTVQVD--------LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           N++ Q+         L  K    +K     I+++SEG+ VF    ++ L N A   +   
Sbjct: 158 NISKQIKNKSEIIDILRKKELDYIKYLNNVINNISEGILVFDKHSKLILWNKAIEQIG-- 215

Query: 470 EENRLSPGTHIRNIAATCSRYYNESD 495
            E ++     I  I      Y  +  
Sbjct: 216 -EMKIKKILDIEEIINEYDIYILDDH 240


>gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
 gi|217985979|gb|EEC52318.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
          Length = 1334

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 2/225 (0%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            ++ K  F  ++S+E R+PLT I+   ++L       +       +  I  ++  +  L+ 
Sbjct: 812  NQSKLRFFTNISHEFRTPLTLIVSQLEMLMER--SDIQPLVYSKLVNIHRNTLRMKRLIT 869

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            ++LD    + G  K  YS   +   L+E+  S         I ++ ++  +      D  
Sbjct: 870  ELLDFRKQEQGFEKFKYSKQNIYSFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFDVV 929

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            +L ++   +LSNA  ++  G T+ L         + +V + G  I E+    +F+RF   
Sbjct: 930  QLEKVIYNLLSNAFKYTPLGGTISLSVQEYGNSVMVTVSDTGVGIAEESLDKIFDRFYQV 989

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 ++G G+GL++ +S I  H G +S+ S +   TT    +P 
Sbjct: 990  DSMNNQKGTGIGLALAKSIIEAHKGKISVRSMEGKGTTFVVELPL 1034


>gi|78184127|ref|YP_376562.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9902]
 gi|78168421|gb|ABB25518.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9902]
          Length = 696

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 155/391 (39%), Gaps = 41/391 (10%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    GRI L+NP  R L++ E   L     +  +   
Sbjct: 290 EELTAAQVKQQSLIATMADGAILLDATGRIVLANPTSRRLFRWEGRSLEGQELVEELPEL 349

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            S   + +    LF++  +  +D R S+      L    +    +   + +++       
Sbjct: 350 LSIEVHSALDALLFSS--SDSEDLRCSVGEPARTLR---IVMQAVRDASGESLKGIAVTI 404

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L          ++
Sbjct: 405 QDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDLGDQLTEDEK 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +++   +  +  L  LVND+LDL+ +++G   + + T+ L   + +  ++      +  
Sbjct: 455 KEFLGVANDETDRLTRLVNDVLDLSRLESGR-TVQFETMNLRPAMEQTLRTYRLNAEDKT 513

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--------- 717
           + +++     L   + +   LLQ+F  ++ NA+ FS  G  + ++A              
Sbjct: 514 VELELDVAPDLPDVLGNWDLLLQVFDNLVGNALKFSRPGGILSMRAYVWPDTCRVEAPIS 573

Query: 718 ---------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIV 761
                               + + G  I     + +F+RF    +      G GLGLSIV
Sbjct: 574 TKSEGPTCTLTSPLPRLRVEIADTGYGISAQDQQRIFDRFYRVENAVHTEVGTGLGLSIV 633

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              ++ HG  VS+ S  +  TT    +P ++
Sbjct: 634 RGILDKHGAQVSMVSELDVGTTFWFELPLEQ 664


>gi|332163059|ref|YP_004299636.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667289|gb|ADZ43933.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 794

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 144/371 (38%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      
Sbjct: 313 LDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    + D  RL QI   ++ NA+ F+ +G  V+      N   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQGEIVVRVRRESNDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +             G G+GL++ +      GG +++ S 
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKSV 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGAGSCFTLTI 503



 Score = 41.5 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|281206421|gb|EFA80608.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1197

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 96/390 (24%), Positives = 176/390 (45%), Gaps = 24/390 (6%)

Query: 422 QVDLETKYNTLVKVQGETID-HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           ++ L+  Y   + +     D  +    ++    G +   N           + +      
Sbjct: 42  RIMLDEMYQVTIHIALCLFDLSIIVNRSLLDHHGNLLDVNEPALHGGGMIRSNIVGMPFW 101

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-- 538
                  S          +++A   +F      + G         +++S++PL +     
Sbjct: 102 DCRWWAVSEKTKIDCREAVYSAAQGNFVRYEVDIFGKSAGTETITIDFSLMPLFDDNGKV 161

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKA-------DEIKNSFVQHVSYELRSPLTNII 588
              +    N+T+  +AE  +  KN+ LRK        DE+K  F  +VS+ELR+PLT I 
Sbjct: 162 WLILPEGRNITEKKQAEDEIARKNDELRKLYEKIKELDELKTQFFANVSHELRTPLTLIT 221

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
             T+ L      S +SK  +Y+E I+ ++  LL  VN++LD++ ++AG M++ Y+ + + 
Sbjct: 222 HPTEKLLKDPTISASSK--KYLEVIARNTRGLLKHVNNLLDISKLEAGKMEVQYAMVDVG 279

Query: 649 DLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
             ++ +         +NN+    VI DG       D  ++ ++ + ++SNA  F+ +G  
Sbjct: 280 RTVSLIASCFELLARDNNLDYSTVIPDGAALMAAIDSDKINRVITNLISNAFKFTPRGGK 339

Query: 708 VILKAARD---NGDFIFSV--KNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSI 760
           + ++  R    +G+  F V   ++G  +PE +   +F+RF  V      +  G GLGLSI
Sbjct: 340 IRVQVDRTTMPSGELAFEVVVSDSGPGVPEHLHAIIFDRFRQVDGGSTRKHGGTGLGLSI 399

Query: 761 VESFINLHGGHVSISSSDEG-VTTINCRIP 789
           V+ F+ LH G VSISSS +G       +IP
Sbjct: 400 VKEFVELHKGTVSISSSKQGTGAVFTIKIP 429



 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 144/345 (41%), Gaps = 42/345 (12%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS---LQGTLELLSDSVLEYSIIPLP 534
             ++ +   CS Y N+    +   A IT+    +K+   LQ  L+  ++ + E       
Sbjct: 596 MRVKLLNNGCSDYINKPFSAEELTARITNLMSMKKAKQFLQEELKSANNDLGEL------ 649

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                       D     + L ++   L +A+  K+ F+ ++S+ELR+PL  I+G++ +L
Sbjct: 650 ---VNELASKKRDLQLLVKQLDQERSLLNQANTHKDEFLMNLSHELRTPLNGILGWSQVL 706

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +         +    +E I   +     LVND+LD++ + +G  ++    I +++++   
Sbjct: 707 RYEPDAD---ELKHGIETIERCARAQNQLVNDLLDMSLIISGKFQITSEPINISEIIENA 763

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GSTVILKAA 713
            +S+       N+++ V    +      D  RL Q+   ++SNA+ FS      V ++ +
Sbjct: 764 LESLTFIAKTKNVKLDVDVKQQHFCARGDSTRLQQVIWNLVSNAIKFSKDSQGAVSVRLS 823

Query: 714 RDNG-----------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
           R +G                         +  V +NG  I  +    VF+RF        
Sbjct: 824 RSDGSDVYGVTGAPADHVKQMMATNKSWALIRVTDNGKGISGEFLPHVFDRFRQADCSST 883

Query: 749 GQRRGVGLGLSIVESFINLHGG-HVSISSSDEGVTTINCRIPSKE 792
               G+GLGLSIV + + LHGG   + S       + +  +P ++
Sbjct: 884 RHYGGLGLGLSIVNNIVELHGGISFAYSDGVGKGASFSILLPIEQ 928


>gi|260642573|ref|ZP_05416441.2| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
 gi|260621480|gb|EEX44351.1| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
          Length = 1353

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 116/267 (43%), Gaps = 6/267 (2%)

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRS 582
            ++L +    +     +  F  +  S+ AE  +     E   + +++K  F  ++S+ELR+
Sbjct: 790  AILLFLATFIGFITFVFRFFWMRKSMEAELEIERRDKEHQEEINQMKMRFFINISHELRT 849

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PLT I+     +           Q +Y++    ++  LL+LVN ++D    + G+ +L  
Sbjct: 850  PLTLILAPLQDIINKISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKA 906

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                   L+ E             I   + SD +    + D   L  I + +LSNA  ++
Sbjct: 907  KKANAYQLIQENFLFYDKLARHKKITYTLHSDLEDKEVLFDPNYLELIVNNLLSNAFKYT 966

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
              G ++ +    +N   +  V + G  IP +    +F RF       +  G G+GLS+++
Sbjct: 967  ESGQSITVTLKEENNYLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLIQ 1024

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
              + LH GH+ + S +   +T +  +P
Sbjct: 1025 RLVELHHGHIELDSEEGKGSTFSVYLP 1051


>gi|225017546|ref|ZP_03706738.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum
           DSM 5476]
 gi|224949696|gb|EEG30905.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum
           DSM 5476]
          Length = 487

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 125/272 (45%), Gaps = 3/272 (1%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +  + +  +    I   +    +   +  +  +   ++    + +  ++++KN F+  VS
Sbjct: 195 VRPVREMSIAVRKIAEGDMSVRIRRQSKDELGQLCESINYMADEISNSEKLKNEFISSVS 254

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT I G+++ + +  +G L     + +  IS  +  L ++V ++LD + +  G 
Sbjct: 255 HELRTPLTAIQGWSETIMSMGVGDL-ETTKKGMRVISNETGRLSDMVEELLDFSRIQDGR 313

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            KLN   + +   L E         H    +        L     DR R+ Q+F  I+ N
Sbjct: 314 FKLNKDRMDILAELEEAVLIYTEHAHREGKQFIYHDIEMLPFIFGDRNRIRQVFINIIDN 373

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A+ +S  G TV +KA  D+ + I +V + G  I E     V  +F    +   RRG G+G
Sbjct: 374 ALKYSDAGDTVTVKAEADDANIIITVSDTGCGIAEKDLPLVKEKFYKANN--TRRGSGIG 431

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           L++    +++H G + I S +   TT+   +P
Sbjct: 432 LAVAVEIVSMHDGALEIDSEEGVGTTVTITLP 463


>gi|218128651|ref|ZP_03457455.1| hypothetical protein BACEGG_00222 [Bacteroides eggerthii DSM 20697]
 gi|217989106|gb|EEC55421.1| hypothetical protein BACEGG_00222 [Bacteroides eggerthii DSM 20697]
          Length = 527

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 95/483 (19%), Positives = 181/483 (37%), Gaps = 47/483 (9%)

Query: 331 HNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            N +F  +  +    +      D           L E   ++   E   S+ +   T ++
Sbjct: 65  VNDAFCSIQHLSRQEVIGKTDYDLF--------SLEEAEKYRRDDEATVSM-RGDFTLRE 115

Query: 391 TWHLPNG------QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET----- 439
             H           T   + TS      + +  ++T  +  E    +L+K + E      
Sbjct: 116 MVHFQGEEKIILQTTKSYVETSEGNQLLVCVSYDITEHIQKERMMESLMKDEQEAHQMMK 175

Query: 440 --IDHLSEGVAVFG--PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                L   + +     D R  + N  F  +    +  L   T         +  Y + D
Sbjct: 176 AIFHKLPSAILIKDIEDDYRFYIINQKFEQMCNMPKELLIGKTDYDIFPKEEADKYRQDD 235

Query: 496 GWD---------LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                       L   I+TS D      +GT   L    +++S         +    +VT
Sbjct: 236 VAATSCEESDPMLIHEIVTSPD------RGTHTHL--QTIKFSFTFKRKKLLVCVGNDVT 287

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              +    L +      +AD +K  F+ ++S+E+R+PL +IIGF+ L+  ++  +   + 
Sbjct: 288 LQYQMMEQLRDALSKAEQADTLKAQFIANMSHEIRTPLNSIIGFSQLMAEAENQTDRDEY 347

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ +   +       NL  D+L+L+ +D+  M         + + +E+   +  K+    
Sbjct: 348 NRIISLNNNLLL---NLFEDVLNLSMLDSDNMSFKNDEFDFSAMFDELAVLMREKVSNPE 404

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +     +  +      DR+RL Q+   +++NA  F+ +G  + +  AR N      V++ 
Sbjct: 405 VEFICENPLQTLMVKTDRERLTQVIGNLITNAAKFTGQG-YIKMGYARKNDGVQIYVEDT 463

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I E     VF+RF       Q  G GLGL I +S +N  GG + + S     +T   
Sbjct: 464 GLGIEEKNLVEVFDRFKKLNVFIQ--GTGLGLPICKSIVNQMGGEIWVESEYGKGSTFYV 521

Query: 787 RIP 789
            +P
Sbjct: 522 WLP 524


>gi|209516776|ref|ZP_03265627.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. H160]
 gi|209502739|gb|EEA02744.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. H160]
          Length = 1360

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/516 (16%), Positives = 191/516 (37%), Gaps = 37/516 (7%)

Query: 296  SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            ++  +  ++     + LHNL     +     D+N  ++ +     +++ I  +       
Sbjct: 722  AELKSKVEETGKINDDLHNLIAANDIGTIFVDRNICIKRYTPRATDVFSIIPS------- 774

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-----HVIVTS 406
                 +  RS   +  +L +    ++    + S    +      +G+           T 
Sbjct: 775  -----DIGRSLLDITHRLEYDKLADDAAEAFDSLRLIERELKSSDGRWYLARFVPYRTTE 829

Query: 407  NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRS 465
            +   G +  F ++T +   E +     +      +   +  +  F   G I   N A   
Sbjct: 830  DRIDGAVLSFIDITGRRQAEDRLREGERRMRIVGESTRDYAIITFDDSGVINSWNAAAER 889

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE---------RKSLQG 516
            ++   E  +  G     +     R  N +      A +    ++E         R    G
Sbjct: 890  IFGYSEAEM-IGQSAEILYTNEDRAANVAQRELAEARLNGRAEEECWHLRKDGTRFFASG 948

Query: 517  TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
             L  L +  +        +     T          E +L   +E   +    ++ F+  V
Sbjct: 949  VLSRLDEPGISGFAKITRDLGEFATDPASGRGTHVE-SLRAASERDAQ--RRRDEFLAIV 1005

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+EL+ PL  I    +L+  +     N   S+  + I  +      +++D+LD++ V  G
Sbjct: 1006 SHELKHPLNLISASAELIARAPETRHNLNVSRATDTIRRTVIGQAQIIDDLLDISRVRTG 1065

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
             + +  + + + +++  V  ++     +  + ++V          AD  R+ QI   ++S
Sbjct: 1066 KLSVVRTVVDVREIVQRVCSAVQDDAAQRGVALRVELADTPVIVHADLTRIEQIVWNLIS 1125

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVG 755
            NA+ F+ +G+  +     D+ + +  V + GS I   +   +F+ F  +     +R G+G
Sbjct: 1126 NALKFTQRGTIDVSLQVNDHAEAVLRVSDTGSGIEPSLLPHIFDMFQQSRDPGTRRGGLG 1185

Query: 756  LGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            +GL++V   +NLHGG V   S       T    +P+
Sbjct: 1186 IGLALVRDLVNLHGGAVRAESDGVGRGATFTVTLPT 1221


>gi|229059659|ref|ZP_04197037.1| hypothetical protein bcere0026_17680 [Bacillus cereus AH603]
 gi|228719672|gb|EEL71271.1| hypothetical protein bcere0026_17680 [Bacillus cereus AH603]
          Length = 351

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPV--EKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++       +T  L+  L ++  +      E  + + + 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLD 229

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D       AD++ + Q++  ++ N++ F+  G T+ +           S+ + G  I E
Sbjct: 230 MDK--VCVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    RIP+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESVEGNGTEFIVRIPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|196040855|ref|ZP_03108153.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196028309|gb|EDX66918.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 484

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 126/273 (46%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEVGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  + +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVKIMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  I  HGG++   S     T+I   +
Sbjct: 444 LGLAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|27367859|ref|NP_763386.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
 gi|27359432|gb|AAO08376.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
          Length = 1217

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 78/356 (21%), Positives = 148/356 (41%), Gaps = 13/356 (3%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           + I  L+  V +    G++ LSN                   I+N A   S   +  +  
Sbjct: 549 QIIQELNNKVFIHDDKGQLVLSN------CSEYLKGHCTNCQIKNAATQISLVGDFEEVQ 602

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            + +        +  +    +E +         +       +    +VT     E AL  
Sbjct: 603 QVLSGKRIKEYSQTVNCDLQIEHIYRERKAIRSLDHRKQFVLTVLQDVTAQKEREAALIA 662

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                + A + +  F+  +S+ELR+PL    G  DL+ T    S + +  + V     S 
Sbjct: 663 AQHEAQSAVKARERFLATMSHELRTPLAATYGLLDLVATH---STSERDKELVLRAKQSL 719

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             L  LV+++LD + ++AG ++++ +   L  LL++  +    K +   +   V I    
Sbjct: 720 NHLNLLVDEVLDYSKLEAGELQIHPAKNELLRLLSQTLRGFEAKANSKGLDYTVNIIPFS 779

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L   + D  R  QI S ++SNA+ F+ +G  + L A   +   + ++K+ G  + ++   
Sbjct: 780 LRWAMIDDLRFNQIVSNLISNAIKFTEQGD-ITLTAQVVDERLLLTIKDTGIGMTQEQLA 838

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++F  FV       R   G GLGL+IVE  +   GGH+++ S+    T ++  +P 
Sbjct: 839 NIFKPFVQADDSITRQFGGTGLGLAIVEQLLKQMGGHIALHSALNVGTQVDIELPL 894


>gi|315652945|ref|ZP_07905911.1| PAS/PAC sensor sensor histidine kinase [Eubacterium saburreum DSM
           3986]
 gi|315484803|gb|EFU75219.1| PAS/PAC sensor sensor histidine kinase [Eubacterium saburreum DSM
           3986]
          Length = 466

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 119/241 (49%), Gaps = 7/241 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   ++ L   +  +  F+ +VS++ RSPLT+I G+ + +    +        +Y+  + 
Sbjct: 229 LNYMSDKLDDTENYQKKFISNVSHDFRSPLTSIKGYLEAILDGTIPP--EMLEKYLNRVI 286

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L   IL L ++++  +KLN ++  +N+++     S   + +  NI I++I  
Sbjct: 287 DETKRLTKLTESILSLDSIES--VKLNKTSFDINEMIRNTASSFEVQCNSKNITIELIFL 344

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                  AD  ++ Q+   ++ NA+ FSS+ S++ ++ +        SVK+ G  I ++ 
Sbjct: 345 NVSQYVFADFSKIQQVLYNLIDNAIKFSSQNSSITIQTSIRKEKIFVSVKDTGIGISKNE 404

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP-SK 791
              +F+RF  +       ++G GLGLSIV+  +  HG ++ + S+    T     +P SK
Sbjct: 405 QNKIFDRFYKSDLSRGKDKKGTGLGLSIVKEILQAHGENIDVISTVGIGTEFIFSLPISK 464

Query: 792 E 792
           E
Sbjct: 465 E 465


>gi|256961794|ref|ZP_05565965.1| hypothetical protein EFGG_00872 [Enterococcus faecalis Merz96]
 gi|256964991|ref|ZP_05569162.1| hypothetical protein EFHG_00287 [Enterococcus faecalis HIP11704]
 gi|257079145|ref|ZP_05573506.1| hypothetical protein EFIG_00410 [Enterococcus faecalis JH1]
 gi|256952290|gb|EEU68922.1| hypothetical protein EFGG_00872 [Enterococcus faecalis Merz96]
 gi|256955487|gb|EEU72119.1| hypothetical protein EFHG_00287 [Enterococcus faecalis HIP11704]
 gi|256987175|gb|EEU74477.1| hypothetical protein EFIG_00410 [Enterococcus faecalis JH1]
          Length = 576

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 155/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 215 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 268

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 269 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 315

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 316 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 375

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L            +Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 376 LIDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 433

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 434 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 492

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 493 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 552

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 553 IAIDSHLGLGTTFTITLPL 571


>gi|193069738|ref|ZP_03050689.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E110019]
 gi|192956940|gb|EDV87392.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E110019]
          Length = 1197

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/424 (19%), Positives = 171/424 (40%), Gaps = 17/424 (4%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEY 612
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S    LN +Q  + +  
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGS---GLNKEQRVEAISL 753

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
             A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   
Sbjct: 754 AYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCS 813

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNG 727
           S          D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++G
Sbjct: 814 STFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSG 873

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           S + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    
Sbjct: 874 SGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTIT 933

Query: 788 IPSK 791
           IP +
Sbjct: 934 IPVE 937


>gi|262190504|ref|ZP_06048750.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae CT 5369-93]
 gi|262033616|gb|EEY52108.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae CT 5369-93]
          Length = 1176

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +      + L+N A+R ++ T                 CS +
Sbjct: 522 EQLRWLTELLDTIPSMIFISDEKDEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 575

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 576 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 633

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 634 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 690

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 691 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 750

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 751 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 809

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 810 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 869

Query: 788 IPS 790
           +P 
Sbjct: 870 LPL 872


>gi|237722583|ref|ZP_04553064.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448393|gb|EEO54184.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1353

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 117/267 (43%), Gaps = 6/267 (2%)

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRS 582
            +++ +  I +     +  F  +  S+ AE  +     E   + +++K  F  ++S+ELR+
Sbjct: 790  AIVLFLAIFIGFITFVFRFFWMRKSMEAELEIERRDKEHQEEINQMKMRFFINISHELRT 849

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PLT I+     +           Q +Y++    ++  LL+LVN ++D    + G+ +L  
Sbjct: 850  PLTLILTPLQEIINKISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKA 906

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                 + L+ +             I   + S+ +    + D   L  I + +LSNA  ++
Sbjct: 907  KKENAHQLIQDNFLFYDKLARHKKITYTLHSELEDKEELFDPNYLELIVNNLLSNAFKYT 966

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
              G ++ +    +N   +  V + G  IP +    +F RF       +  G G+GLS+V+
Sbjct: 967  ESGQSITVTLKEENNWLVLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQ 1024

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIP 789
              + LH G + + S +   +T +  +P
Sbjct: 1025 RLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|240146930|ref|ZP_04745531.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
 gi|257200913|gb|EEU99197.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
          Length = 478

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 120/261 (45%), Gaps = 5/261 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +  +   +  +      +L      L   +E +  FV +VS++ RSPLT+I G+ + +
Sbjct: 215 NFEAKIDVHSNDEIGYLAASLNYMANELNTLEEDQRKFVSNVSHDFRSPLTSIKGYVEAM 274

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +      Q +Y+  I   +  L  L   +L+L    +  + L+ ++  +N  +   
Sbjct: 275 LDGTIPV--EMQDKYLNIILFETERLNKLTKSLLELNKFGSHGVMLDITSFDINHTIRMT 332

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q+      E +I   +I  G+     AD  ++ Q+   ++ NA+ FS   S++ ++   
Sbjct: 333 VQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYNLIDNALKFSHANSSITIETTE 392

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHV 772
            N     SVK+ G  IP+D  K +++RF          ++G GLGLSIV+  I  HG ++
Sbjct: 393 KNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENI 452

Query: 773 SISSSDEGVTTINCRIP-SKE 792
           +  S++   T     +P +KE
Sbjct: 453 NCISTEGVGTEFIFTLPLAKE 473


>gi|302876834|ref|YP_003845467.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307687519|ref|ZP_07629965.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302579691|gb|ADL53703.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 612

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 153/381 (40%), Gaps = 18/381 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           + ++E             I++  + + V   +     +N +  +L+  +  +      + 
Sbjct: 208 RRNIEELLINNQDCYNLLINNSLDAIVV-HRELTCLFANDSAVNLFGMKNGKRIYKQKLI 266

Query: 482 NIAATCSRYYNESDGWDLFAAIITS--FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
            +     R        D       S  F+   KS    LE+ S S+    I       T+
Sbjct: 267 ELIEEGERDRVAQFFRDAIKDKCQSLKFESVIKSKDKNLEVESTSIF---ITYEGEPTTL 323

Query: 540 LTFVNVTDSVRAER---ALTEKNEALRKADEIKN---SFVQHVSYELRSPLTNIIGFTDL 593
             F +++   + E+    +    E L ++ E  N       ++S+EL++PL  I     +
Sbjct: 324 TIFRDISHKKQVEKLKIDVQRNVELLTESLEFNNSIMQLFSNISHELKTPLNIIFAAVQV 383

Query: 594 LKTSKLGSLNSKQ----SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
           L  S       +      +Y   +  +   L  L+N+ LD+  +D+G + +      + +
Sbjct: 384 LSISMRDKAREEYLPMSEKYFNIMKQNCYRLTRLINNFLDITKIDSGFVNITLKKCNIVN 443

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           ++ ++  S+A  +    ++I   ++ +      D  ++ +    ++SNA+ F++ G  + 
Sbjct: 444 IVEDITLSVAPYVESKELKITFDTEVEEIIINCDVDKIERCLLNLISNAIKFTNPGGDIF 503

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINL 767
           +   + +     SV++ G  IPED  + +F RF       R  R G G+GL++V+S + +
Sbjct: 504 ININQCDDKVAISVRDTGVGIPEDKLELIFERFGQVDKTLRRNREGTGIGLTLVKSLVEI 563

Query: 768 HGGHVSISSSDEGVTTINCRI 788
            GG + + S     +    + 
Sbjct: 564 QGGQIEVHSLLGVGSEFVMKF 584


>gi|228929722|ref|ZP_04092739.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228829901|gb|EEM75521.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 484

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 125/271 (46%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|213023853|ref|ZP_03338300.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 294

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 10/223 (4%)

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           + ++S+ELR+PL  +IGFT L   +    LN  Q  ++  I  S+  LL ++ND+LD + 
Sbjct: 1   LANMSHELRTPLNGVIGFTRL---TLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSK 57

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIF 691
           ++AG + L      L + L+EV   +A   H+  + + +     +    + D  RL Q+ 
Sbjct: 58  LEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDPLRLQQVI 117

Query: 692 SKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           + ++ NA+ F+  G+  IL   R            +++ G  IPE     +F  F     
Sbjct: 118 TNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADA 177

Query: 748 RGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              RR  G GLGL I +  +N  GG +S  S     +T    I
Sbjct: 178 SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 220


>gi|171060373|ref|YP_001792722.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777818|gb|ACB35957.1| Hpt sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1021

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 133/337 (39%), Gaps = 20/337 (5%)

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L  +   R      +  +A T + +    D      AI   + DE  +L   L      
Sbjct: 172 WLMFSWTVRHRLSKEVTRMARTVAGWRYRKDETTPVEAIAYPYPDELGALVDALNDSQAR 231

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRS 582
           + +       + + +       +   AER   L    +    A   K  F+ ++S+E+R+
Sbjct: 232 LHD-------SMRRLDALNQNLEHSVAERTVELQRATDVAEAASRAKGEFLANMSHEIRT 284

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  I+G   L   S    L      Y+     ++  LL ++NDILDL+ ++AG + +  
Sbjct: 285 PINAILGMLYLALKS---DLAPSVRNYLGKAQNAAHALLGVINDILDLSKIEAGKLDIER 341

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDF 701
               L+ +L  +  ++  +     I   +  D     + + D  RL Q+   +  NA+ F
Sbjct: 342 VEFRLDGVLEMLTDAVGHQAAHKGIEFLIRYDPAIPPALIGDPLRLGQVLLNLCGNAVKF 401

Query: 702 SSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           +  G   +    L +         +V++ G  I  ++   +F +F        RR  G G
Sbjct: 402 TEHGEVELAFRALPSRPGEITVQVNVRDTGIGIAPEVQHRLFEKFSQADQSTTRRFGGTG 461

Query: 756 LGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPSK 791
           LGL+I +  + L GG + I  +     TT+   +P +
Sbjct: 462 LGLAISKQLVELMGGRIWIEDTLPGRGTTMCFTLPLR 498


>gi|218905899|ref|YP_002453733.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218534871|gb|ACK87269.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 484

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 125/271 (46%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|78221571|ref|YP_383318.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78192826|gb|ABB30593.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 482

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 24/354 (6%)

Query: 439 TIDHLSEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             D L+  V V   D  R+   N     L+            I+    T    +  +D  
Sbjct: 147 IFDSLNALVYVVDMDSYRLLYLNKYGAQLFGENWEGRPCHEVIQG-GKTLPCDFCTNDKL 205

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            L    +  +  E K++                      Q +   +  TD       +  
Sbjct: 206 LLDGKALPPYIWEYKNMTTG----------------RWYQCIDKAIRWTDDRLVRMEIAI 249

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                ++ + +K+  +  VS+E+ +PLT +IGFT+ L  +++     +Q   ++ I   +
Sbjct: 250 DITERKEMERMKDEMISAVSHEMHTPLTAMIGFTEFLLENEVD--REQQKNCLQTIHKET 307

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             L  L+N+ L L  + A ++K     + +  LL +          ++   I V     L
Sbjct: 308 ERLSELINNFLQLQRLKASMVKFRIMPVSVGLLLADAAALYTAASRKH--TIVVECPPDL 365

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                + ++L Q+   ++SNA+ +S  G TV L    D+   +F VK+NG  I  +  + 
Sbjct: 366 PPVRGNEEQLYQVAGNLISNAIKYSPAGGTVTLGGRADDDMVVFWVKDNGVGISPEFQER 425

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           VF RF    +  +R   G GLGL++V   +  HGG V + S+ +  +T    +P
Sbjct: 426 VFERFFRVDNSDRRKVGGAGLGLTLVREIVAAHGGRVWVESTPDAGSTFFVSLP 479


>gi|134300476|ref|YP_001113972.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134053176|gb|ABO51147.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 467

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 3/248 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +  +    L   +E + K+D++KN F+  +S+ELR+PLT+I G+ + L   +L 
Sbjct: 216 TKREDDEVGKLADTLNYMSEEILKSDKMKNDFISSISHELRTPLTSIKGWGETLFGEELQ 275

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               +  + +  I   +  ++ LV ++LD +   +G +KLN   I +N LL EV Q  A 
Sbjct: 276 D-REEVKEGLNIICKETDRMIGLVEELLDFSRFQSGRIKLNLEKININSLLTEVIQQYAI 334

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           ++ +  I +    +  +     DR RL Q+F  +L NA+ F+     V +      G   
Sbjct: 335 RVRQKKIEMPYQFNDSVPEITGDRNRLKQVFINLLDNAVKFTPFCGKVQISTEYSEGTIK 394

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
               N+G  I  +    V  +F        R G GLGL+IV+  INLH G + I S    
Sbjct: 395 IDFVNSGEGIRSEDLPRVTEKFYKA--NANRPGSGLGLAIVKEIINLHQGDLHIESIPGQ 452

Query: 781 VTTINCRI 788
            T +   +
Sbjct: 453 NTRVTVIL 460


>gi|229529315|ref|ZP_04418705.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 12129(1)]
 gi|229333089|gb|EEN98575.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 12129(1)]
          Length = 1176

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +      + L+N A+R ++ T                 CS +
Sbjct: 522 EQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 575

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 576 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 633

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 634 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 690

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 691 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 750

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 751 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 809

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 810 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIKVKSEFEQGTQIQVN 869

Query: 788 IPS 790
           +P 
Sbjct: 870 LPL 872


>gi|212691439|ref|ZP_03299567.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
 gi|212666049|gb|EEB26621.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
          Length = 757

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 167/389 (42%), Gaps = 24/389 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWK 468
           G  ++    T++   + +    ++ + E +    EG     +  DG+  + + AF  L  
Sbjct: 381 GIAYLIYIYTLEKGRKKEALRNLRFEHEALTLALEGGKTYAWCFDGKTAVFDQAFCELTN 440

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VL 526
             +N L     I+ IA     Y +  D       +       R++ Q   +         
Sbjct: 441 RSQNLL----EIKEIAN----YVHPGDQAQFRKNVSNILHRPRRTAQYRCKFDDTGYQWW 492

Query: 527 EYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           E+    L + +          N+ +    E  L    + L +  E+K SF+ ++S+E+R+
Sbjct: 493 EFRYSVLQHYEQNPIITGLLVNIQEIKDKEEELIRARK-LAEQAELKQSFLANMSHEIRT 551

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF++LL T K  S   ++ ++   I  ++ +LL LVND+L+L+ +++G M  + 
Sbjct: 552 PLNAIVGFSNLLTTEKNIS-EEEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHC 610

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                +     V Q+    +    +        +  +   DR RL Q+ +  L NA  F+
Sbjct: 611 EDCSAHHFAETVYQTHQVIILP-PVEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFT 669

Query: 703 SKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           S+G  + L     ++  +  F V++ G+ IP++  + +F RF       Q  GVGLGL+I
Sbjct: 670 SQGH-IKLGYFCDKEKKEIHFFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAI 726

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  +    GH+ + S     +     +P
Sbjct: 727 SKVIVEKMNGHIDVQSEVNKGSRFTAVLP 755


>gi|326795178|ref|YP_004312998.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326545942|gb|ADZ91162.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 1000

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 8/265 (3%)

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           II L       +  +     R    L E   A + A + K+ F+  +S+E+R+P+  IIG
Sbjct: 201 IIALLMYLIRESLRDNKRMARLANDLEETAVAAKVAAQAKSDFLATMSHEIRTPMNAIIG 260

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            T L+  ++   L  +Q +Y+  I  SS  LL L+NDILD + V++G + L   + +L+D
Sbjct: 261 LTHLVLDTE---LQERQRRYINRIDESSNNLLQLINDILDFSKVESGKLDLVERSYLLDD 317

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +L  +            + + V  D  L  +F+ D  R+ Q+   ++ NA+ F+ KG   
Sbjct: 318 VLEYIHHISLPTARSKKLLLLVQRDFNLDDAFIGDVTRIQQVLVNVVGNAIKFTDKGYVC 377

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
           +    R  G  +F V+++G  I       VF+ F        R   G GLGLSI +  + 
Sbjct: 378 VTVKRRQEGGLLFCVEDSGIGIDS-TLD-VFDGFTQADASTTRKYGGTGLGLSISKRLLE 435

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           L GGH+S  S     TT    +P +
Sbjct: 436 LMGGHISFKSQVGRGTTFFIELPYQ 460


>gi|298480889|ref|ZP_06999084.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272912|gb|EFI14478.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 623

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 5/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q
Sbjct: 376 ELLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQ 433

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     + 
Sbjct: 434 QSYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSE 493

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKN 725
            +    +  +    V D QR+ Q+   +LSNA  F+ +G   +      +    +FSV +
Sbjct: 494 NQFLFTTSFESFRMVTDVQRMQQVMINLLSNANKFTKRGKITLDFSVNEETQMAVFSVTD 553

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP++    VF RF       Q  G GLGLSI +  ++   G + I     G     
Sbjct: 554 TGCGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTGGARFV 611

Query: 786 CRIPS 790
              P 
Sbjct: 612 FSHPL 616


>gi|229545684|ref|ZP_04434409.1| sensor histidine kinase [Enterococcus faecalis TX1322]
 gi|257422479|ref|ZP_05599469.1| two component system sensor histidine kinase [Enterococcus faecalis
           X98]
 gi|300860668|ref|ZP_07106755.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|307275836|ref|ZP_07556975.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|307291859|ref|ZP_07571730.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|229309134|gb|EEN75121.1| sensor histidine kinase [Enterococcus faecalis TX1322]
 gi|257164303|gb|EEU94263.1| two component system sensor histidine kinase [Enterococcus faecalis
           X98]
 gi|300849707|gb|EFK77457.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|306497125|gb|EFM66671.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|306507528|gb|EFM76659.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|315029564|gb|EFT41496.1| PAS domain S-box [Enterococcus faecalis TX4000]
 gi|315032036|gb|EFT43968.1| PAS domain S-box [Enterococcus faecalis TX0017]
 gi|315156146|gb|EFU00163.1| PAS domain S-box [Enterococcus faecalis TX0043]
          Length = 591

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 155/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L            +Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 449 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|51891870|ref|YP_074561.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855559|dbj|BAD39717.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 584

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 126/300 (42%), Gaps = 31/300 (10%)

Query: 511 RKSLQGTLELLSDSVLEYSI----IPLPNA-----QTMLTFVNVTDSVRAER--ALTEKN 559
           R+  QG  E+  + V +        PL +A       +       +   AER   L E +
Sbjct: 286 RRIGQGRWEVPEEEVRDLRAHQETSPLVDAIQAMSDELQALYRNLERKVAERTRQLQEAH 345

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
             L      +  F   +++E R+PLT+IIGF+ LL +     L   Q ++++ I  S+  
Sbjct: 346 ADLEALHRSQTEFYSAMTHEFRTPLTSIIGFSQLLLSPGGDPLTPGQREHLKDILESAQR 405

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL LVND+LD + + AG M L  + + L + + E    +     +  I +       L  
Sbjct: 406 LLQLVNDLLDASRLQAGQMPLRIAAVDLGEAVQEALAVVRPLAQQREITVTCHIPADLPL 465

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  R+LQI   +LSNA+ F+  G  V L A   +     SV++NG  IP +  + +F
Sbjct: 466 VAADDLRVLQILLNLLSNAIKFTQVGGEVALTAEARSDLVQVSVRDNGPGIPPEDHEVIF 525

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESF----------INLHGGHVSISSSDEGVTTINCRIP 789
             F   +   +  G                     + LHGG + + S     +T +  +P
Sbjct: 526 QLFRRGSAHERTGGS----------GLGLALAKLLVELHGGRIWVESRPGCGSTFHFTLP 575


>gi|94264477|ref|ZP_01288265.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
 gi|93455108|gb|EAT05332.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
          Length = 876

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 100/538 (18%), Positives = 188/538 (34%), Gaps = 103/538 (19%)

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +++A +A  P+N E+    R       +L W            ++E       LP+G   
Sbjct: 191 LEVAGVAPGPANLEVALRGRDGLGAAGELFWGD------GAVFAAEPLTMGVTLPSGSW- 243

Query: 401 HVIVTSNPRGGT------------------------IWMFENLTVQVD-----LETKYNT 431
              + + P GG                          W    + V++             
Sbjct: 244 --EIAALPTGGWPTASPLTPFLWGAGLLIALLAATLTWFLARIPVRLRQQVAAATASLKA 301

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA--ATCSR 489
                 E +++ +  V      GR+   N   +  +   E  +     +  I      + 
Sbjct: 302 SESKYRELVENANSIVLKMDLQGRVTFFNEYAQRFFGYREEEIMGREVVGTIVPGRDLAG 361

Query: 490 YYNESDGWDLFA--AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
               +   D+F      TS ++E +   G+   +S +          + + +       D
Sbjct: 362 RNLAAMIKDVFENPEQYTSNENENRKRDGSRVWVSWTNRAI----YEDGELIGLLCIGND 417

Query: 548 SVRAERALTEKNEALRKADEI---------------------KNSFVQHVSYELRSPLTN 586
             R + A  +     ++ +E+                     K+ F+  +S+E+R+PL  
Sbjct: 418 ITRLKEAEDQLRRHQQELEEMVNARTDELLTANAELNRVSAYKSRFLSAMSHEIRTPLQT 477

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIGF++L              QY+E I  +   LL L+N ILDLA +++G ++L      
Sbjct: 478 IIGFSNLALEGGSQPP----RQYLEMIKTAGDTLLELINGILDLAKIESGRLELAERCFK 533

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG 705
             + + +  +  A    +  +      D  +    V D  RL Q+   ++ NA+ F+ +G
Sbjct: 534 PAEFIGKTLEPYAFAARQRGLAFDTSIDPAVPGEVVGDPARLTQVLVNLVGNALKFTEEG 593

Query: 706 ST-VILKAARDNGD------------------------FIFSVKNNGSSIPEDMCKSVFN 740
              V ++ A D+ D                          F+V+++GS I  +    +FN
Sbjct: 594 EIAVSVRPAADDADRRPTVGAGRAEVAPPAASDATSGLLHFTVRDSGSGIAAEQQGRIFN 653

Query: 741 RFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI-----PSKE 792
           RF           G GLGL+I  S + L GG + + S     ++ +  I     P +E
Sbjct: 654 RFAQGEGAASPHGGHGLGLAIAASLVELMGGEIWLESRPGEGSSFHFTIAYRLPPPRE 711


>gi|298387314|ref|ZP_06996867.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
 gi|298259983|gb|EFI02854.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
          Length = 538

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 101/515 (19%), Positives = 209/515 (40%), Gaps = 50/515 (9%)

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
            D     ++IL NL   I + D     +++       W  +    +     + +      
Sbjct: 48  QDYYHSLFDILDNLPFPIMVKDIQNSFRYY------YWNKESELQSGIKREEAIG--CTD 99

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIV------TSNPRGGTI 413
                E+   K +++   S+ ++ + +  ++++   +G     I           +   +
Sbjct: 100 YEIYGEERGRK-YRDVDESLVQADKIYRAEESYSTVDGAVHDTIAVKSIIKWKEKKKWLL 158

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETID-------HLSEGVAVFGPDGRIKLSNPAFRSL 466
               ++T     E +     +   + ++        ++ G+            N   +  
Sbjct: 159 VTRWDITRLKTYERELIAAKEELEKALNKQKLALKSVNFGLIYIDK-------NYLVQWE 211

Query: 467 WKTEENRLSPGTHIR--NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             T+   L  G H     I    S   +       F   I      R ++Q     +   
Sbjct: 212 ETTQIASLVKGRHYTPGQICYKTSALRDTPCEQCAFQKAIEQGKIIRHTIQ-----IDQV 266

Query: 525 VLEYSIIPLPNAQTMLT------FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
             E +  P+ + + +        F ++T+ V+ ++ L E  E   +++ +K++F+ ++S+
Sbjct: 267 DFEVTATPVYDNEGIEIIGGLLRFEDITEKVKMDKMLQEAKEKAEESNRLKSAFLANMSH 326

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+PL  IIGF+D++  +       ++ +Y++ +S+++ +LL L++DILDL+ ++AG M
Sbjct: 327 EIRTPLNAIIGFSDMICQT---GEEEEKQEYMKIVSSNNELLLQLIDDILDLSKIEAGTM 383

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +   +   +NDL+  + + +  K    ++ I      +      DR RL Q+     +NA
Sbjct: 384 EFTLAPTDINDLMEGICRQMQEKNTSPDVAITFTEKAEECILNTDRVRLSQVIINFTNNA 443

Query: 699 MDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           M F+ KGS  +  +      +  F VK+ G  IP D    VF RFV        +G GLG
Sbjct: 444 MKFTPKGSIQMGYRIDEAKDEIYFYVKDTGIGIPADKINEVFERFVKLNTFA--KGTGLG 501

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           L+I    +   GG +   S +   +    R+P  E
Sbjct: 502 LAICRVIVERLGGTIGADSKEGKGSCFWFRLPIHE 536


>gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 910

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 117/653 (17%), Positives = 249/653 (38%), Gaps = 64/653 (9%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           + +++        +        ++  ++ +   W  D    +   +  Y        +  
Sbjct: 143 LANDVTAVKEADFRTEESKKNLEMAMEAANMSSWVYDVNKRVF--SSLYGDPIVENSLTM 200

Query: 234 QKAIGES--------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
            + + +          KLF + I K +       + + E      H  ++       L  
Sbjct: 201 DELLNKLHPQDHASLTKLFSQLINKEVQQGHITVRFYNEQEKRYRHYESRMRLSSEHLGK 260

Query: 286 FGEAGIAIDVSKEITV---NDQLTHTYEILHNLTVAIAIFDQN---RYLQFHNR-----S 334
               G  I+V++ I +      L    E+   ++  I  +D +   +  + +N      +
Sbjct: 261 LLIIGTQIEVTERIQMVKKTQDLITKRELAMQVSN-IVHWDFDVQTQKFESYNDPVNDYA 319

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              L  +   F+      D L     +   +    ++      I    +    + D+W  
Sbjct: 320 SDRLLSV-TEFMDVIHPED-LSSAYDAIQSMLSGKDF-----TINFTCRVQTKYDDSWQY 372

Query: 395 PNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
            N   +      N        F +N++    L  +          T   +  G++ +  D
Sbjct: 373 CNVMGVPFERDENDNIIRFTGFRQNISKLHQLNEELKERNYKMELTFKTV--GMSYWDFD 430

Query: 454 GR----------IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-A 502
            R          +   NP  +++   +  + +    + ++    +     +D    F   
Sbjct: 431 VRSKQFKAFNDPVNDYNPE-KTISPEDYLKAAHPDDVDSVRENLNHMIQGTDKDLSFKYR 489

Query: 503 IITSFDDERKSLQGT-LELLSD---SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
             T +D E + L  T +++  D    V+ Y+ I   N +            +  + L E 
Sbjct: 490 SKTKWDKEWQVLVVTGIQVERDKKGRVVRYTGIEFNNTK----------WEKMAQELKEL 539

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E    +D +K++F+ ++S+E+R+PL  I+GF++L+          ++ +Y+  I +++ 
Sbjct: 540 KEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM---VSCDDPEEKEEYMGIIQSNNE 596

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +LL L+NDILDL+ +++GI++       L+ + NE+   +  K+    + +++ + G   
Sbjct: 597 LLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEVELRLGNSGPDC 656

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
               DR RL Q++   L+NA+  +  G  + +  + + G   F V+++G  IP ++   V
Sbjct: 657 WIFLDRNRLKQVWMNYLTNAVKCTHSG-YIKMGYSIEKGGIRFYVEDSGVGIPLEVQDRV 715

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF       Q  G GLGL+I  + I    G V  SS     +T    IP +
Sbjct: 716 FGRFQKLNEFAQ--GTGLGLAISRAIIEGADGKVGFSSVPGVGSTFWAWIPCE 766



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 68/183 (37%), Gaps = 13/183 (7%)

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
                G      ++S    + DQL  T  I  NL V I I+D N  L+  N   + ++ +
Sbjct: 7   TSAEDGNPSFEKEMSDL--IQDQLLFTESIYANLPVGIEIYDANGILRSINDHALHMYGV 64

Query: 342 D--------LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +        +    +   +++L   +++   +  +  +   + N  + + S       + 
Sbjct: 65  EDRTTVIGVVNLFNSPYCDEKLRTKIQAGEDIVLEFEYDFDRINKDAYFSSHNQKSMIYE 124

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           +   + + +   + P  G I +  ++T   + + +     K     ++  +    V+  +
Sbjct: 125 V---KVVPIRSKTGPIIGHILLANDVTAVKEADFRTEESKKNLEMAMEAANMSSWVYDVN 181

Query: 454 GRI 456
            R+
Sbjct: 182 KRV 184


>gi|239908418|ref|YP_002955160.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798285|dbj|BAH77274.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 685

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 167/453 (36%), Gaps = 63/453 (13%)

Query: 366 PEQLNW-KTWKENIFSVYKSSETHKDTWHLPNGQTLHVI----VTSNPRGGTIW---MFE 417
           P+  +  +    +     + +         P+G   HV     +  +  G  +    +  
Sbjct: 90  PDDRDRVEAALRDHADAGRDAFALDYRQRTPDGGVRHVTDRIQLHRDAAGRVVAVQALVL 149

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF----GPDGRIKLSNPAFRSLWKTEENR 473
           ++T  V          +     +D     +         D R++  NPA   L+      
Sbjct: 150 DVTESV-------LARRDLEMVLDSAPIPIVKVRLGDDGDRRLEYQNPAAERLFGKGATG 202

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL-SDSVLEYSIIP 532
           LS    + N   TC    +ES        +I +   ER   +    L  S S++E  I  
Sbjct: 203 LSCKNSLCN-KETCPVLADESGLVRERECLINTLAGERVMYKTARRLPGSPSIIEAMI-- 259

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
                      +VT+ +R  + LT   EA   A+  K+ F+  +S+E+R+P+  I+G  +
Sbjct: 260 -----------DVTELMRTRQRLTRAMEAAEAANRAKSQFLATMSHEIRTPMNGIMGMIE 308

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L   ++   L  +Q  Y++    S+  LL ++NDILD + ++AG M+L  S   L   L 
Sbjct: 309 LAMATE---LTPEQRDYIDLARQSAVHLLEIINDILDFSRIEAGRMELARSRFSLGQALG 365

Query: 653 EVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
              +        +  R+ +     +    V D  RL QI + ++SN + F+ K   V + 
Sbjct: 366 VCLRLFEAPAARSGNRLSLDIAPDVPGELVGDPGRLAQIVANLVSNGLKFT-KNGFVRVA 424

Query: 712 AARDNG--------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---------RGV 754
              D             F V ++G  IP D    +F+ F        R            
Sbjct: 425 VGLDPDAPRKSGALSLRFDVSDDGIGIPTDKQARIFDYFTQLDASLNRGAGGTGLGLA-- 482

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                I +S + L  G + ++S     +T +  
Sbjct: 483 -----ISKSLVTLMSGRIWVASDPGRGSTFSFT 510



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/197 (10%), Positives = 62/197 (31%), Gaps = 22/197 (11%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLD-FLVWHRDQAGD---ILWANISY------KK 224
            +E         +  +  ++ +++ ++   +L+ +  + G    + + + +       ++
Sbjct: 16  QAESRAAAAPEDEDLSDAAMARLILEASPAYLIRYAVKDGKPGPVSYVSSNIDRFGFSRE 75

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
              T        I    +   E   +    +            T + G       +++  
Sbjct: 76  ELLTGRRSPWDLIHPDDRDRVEAALRDHADAGRDAFALDYRQRTPDGGVRHVTDRIQLHR 135

Query: 285 SFGEAGIAI-----DVSKEITVNDQLTHTYEILHNLTVAIAIF----DQNRYLQFHNRSF 335
                 +A+     DV++ +     L     +L +  + I       D +R L++ N + 
Sbjct: 136 DAAGRVVAVQALVLDVTESVLARRDLEM---VLDSAPIPIVKVRLGDDGDRRLEYQNPAA 192

Query: 336 VELWEIDLAFLATNPSN 352
             L+      L+   S 
Sbjct: 193 ERLFGKGATGLSCKNSL 209


>gi|86356892|ref|YP_468784.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86280994|gb|ABC90057.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 513

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 8/303 (2%)

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R   ++   DL     +   D+R+     +++ +   ++  +     A  +    +V+  
Sbjct: 167 RRGEDAASVDLRLDRPSVSRDQRQFAYLRMDMTARRDVDGEL-----AAVIAQLRDVSIE 221

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607
            +       +      A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N +Q 
Sbjct: 222 QQLRAEAQNRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQR 281

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A +     +
Sbjct: 282 EYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILDAFDISSSVRSCESMLALQAKTKGV 341

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    +V + G
Sbjct: 342 TLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSVDAAARDGILKLTVSDTG 401

Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP D    +   FV   N +  +  G GLGLS+V+  + LHGG+ +I+S     T I 
Sbjct: 402 IGIPADKLAMLGQPFVQIQNDYTRRFEGSGLGLSLVKGLVALHGGNFAIASRPGEGTIIT 461

Query: 786 CRI 788
             I
Sbjct: 462 VEI 464


>gi|307289242|ref|ZP_07569198.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|306499951|gb|EFM69312.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|315163856|gb|EFU07873.1| PAS domain S-box [Enterococcus faecalis TX1302]
          Length = 591

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 151/382 (39%), Gaps = 31/382 (8%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +    +  
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSD-- 287

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSI 530
                  +N+ +       ++D   L   ++    S   E    QG   L  D  L Y  
Sbjct: 288 -------KNMQSNYLEVIQDADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRY-- 338

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   +A          D  R  +            ++++  FV +VS+EL++P+T+++GF
Sbjct: 339 LDDQSANDYQVLGIAYDLTRVRQL-----------EKMQKDFVSNVSHELKTPVTSLLGF 387

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+ L             Q++  +   +  L  L+ +IL+L+   +  +      I L   
Sbjct: 388 TETLIDGAKED-PEVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKF 445

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +
Sbjct: 446 ITEILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITI 504

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
             A +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L 
Sbjct: 505 SYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELL 564

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG ++I S     TT    +P 
Sbjct: 565 GGKIAIDSHLGLGTTFTITLPL 586


>gi|319653245|ref|ZP_08007347.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2]
 gi|317395166|gb|EFV75902.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2]
          Length = 454

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 5/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R++    + L    E +N F+  +S+ELR+PLT I G+ D+++   L     +++QY+  
Sbjct: 208 RSIQLLADDLNYLREERNEFLSSISHELRTPLTYIKGYADIVQKRNLSP--EERNQYLSI 265

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L ++V ++ DLA +D     +   +I L D + +++   +    E  + + V 
Sbjct: 266 ILEETNRLSDMVKNLFDLAKIDKNTFDIKKRSIDLKDFMKKIETKFSPAFTEKGMLLSVN 325

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               + +  AD  RL QI   +L NA+ +S+ G    +   R     I ++K+ G  I E
Sbjct: 326 CRESI-TISADASRLEQIIFNLLDNAIKYSTAGDKTTININRTKKHVIINIKDTGRGISE 384

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +    +FNRF        R   G GLGL+IV+  ++ HGG +S+ S +   T      
Sbjct: 385 EELPFIFNRFFRVDKSRARALGGTGLGLAIVKELVHAHGGTISVCSREGDGTEFEIVF 442


>gi|320107290|ref|YP_004182880.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus
            saanensis SP1PR4]
 gi|319925811|gb|ADV82886.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus
            saanensis SP1PR4]
          Length = 1089

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 130/780 (16%), Positives = 274/780 (35%), Gaps = 79/780 (10%)

Query: 58   TYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDE---------------TPEIIGQLHQR 102
                L+E  +  ++Y  LL       +V +                     E++GQ  + 
Sbjct: 334  ISRDLTESKESEARYRGLLEAAPDAMVVVNRSGNIVLLNIQAEKKFGYHRDELVGQPVKN 393

Query: 103  IDIPQTDTDLLSFENWLKFHH-YIKLSKATE--KLRKEGQSFDLVAETQNDCAIKIEGRV 159
            I        L++ E          ++    E   LRK+G  F +         ++    +
Sbjct: 394  IIPQGFAERLIADETRTATEALAQQIGTGIELIALRKDGSEFPIELMLS---PLESAEDI 450

Query: 160  SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
              + A            +++        L+   S ++ L ++    +   +Q G I+  N
Sbjct: 451  LVTAAI----------RDISVRKAAEVHLAQMESRYRGLLEAAPDAMVVVNQEGAIVLLN 500

Query: 220  ISYK-----KNTETEGIVFQKAIGESR--KLFKEEIKKRMISSSALEKNFCETVSTLEHG 272
            +  +     +  E  G      I E    ++  +  +    + +       E ++  + G
Sbjct: 501  VQAEKQFGYRRDELVGQAVTNIIPEGFAERIIADGTRSAAEALAQQIGTGIELIACRKDG 560

Query: 273  NNKSYKIVRVLNSFGE----AGIAIDVS----KEITVNDQLTHTYEILHNLTVAIAIFDQ 324
            +    +I+       E         D+S     E+ +         +L     A+ + +Q
Sbjct: 561  SQFPIEIMLSPLESQEGILVTAAIRDISVRNAAELHLAQMEGRYRGLLEAAPDAMVVVNQ 620

Query: 325  NRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
               +   N    + +      L                N +PE    +   +   S  ++
Sbjct: 621  EGAIVLLNVQAEKQFGYRRDELVGQAV----------TNIIPEGFAERIIADGTRSAAEA 670

Query: 385  SETH-----KDTWHLPNGQTLHVIVTSNP---RGGTIWM--FENLTVQVDLETKYNTLVK 434
                     +      +G    + +  +P   + G +      +++V+   E     +  
Sbjct: 671  LAQQIGTGIELIASRKDGSQFPIEIMLSPLESQEGILVTAAIRDISVRNAAELHLAQMES 730

Query: 435  VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
                 ++   + + V   +G I L N      +    + L  G  + NI          +
Sbjct: 731  RYRGLLEAAPDAMVVVNQEGAIVLLNVQAEKQFGYLRDELL-GQKMTNIIPEGFAERIIA 789

Query: 495  DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD---SVRA 551
            DG       +         L    +  S+  +E  + PL + +  L    + D      A
Sbjct: 790  DGTRSADDALAQKIGTGIELIARRKDGSEFPIEIMLSPLISPEGTLVTTAIRDISVRKDA 849

Query: 552  ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
            E  L  K E L +++E    F    S++L+ PL  +  +T LL     G L+S   +++ 
Sbjct: 850  EAHLLHKVEQLNRSNEELGHFAYIASHDLQEPLRMVASYTQLLARRYKGRLDSDADEFIA 909

Query: 612  YISASSTILLNLVNDILDLATVDA-GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            +    ++ +  L+ D+L  + V+  G   L  S+    + LN+  +++   +  +   I 
Sbjct: 910  FAVDGASRMQRLIKDLLTFSRVETMGKQPLVISS---EEALNQSLRNLRGAIEGSGAVIT 966

Query: 671  VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARD-NGDFIFSVKNNGS 728
                G L + +AD  +L+Q+F  +++N + + + G   V + A  D    + FSVK+NG 
Sbjct: 967  Y---GPLPTVLADETQLIQLFQNLVANGIKYHTTGIPRVHISAHLDVAKKWEFSVKDNGM 1023

Query: 729  SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             I     + +F  F     R +  G G+GL+I +  +  HGG +S+ S  +  +T +  +
Sbjct: 1024 GIDSQYFEKIFGMFQRLHKREEFDGTGIGLAICKKIVERHGGVLSVQSELQHGSTFSFSL 1083


>gi|253580705|ref|ZP_04857969.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848076|gb|EES76042.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 927

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 119/241 (49%), Gaps = 11/241 (4%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +      KA+  K+ F+ ++S+++R+P+  ++G+++L+K       + K   Y E +  
Sbjct: 533 RKAKIQAEKANAAKSEFLFNMSHDIRTPMNALLGYSELIKREL---TDPKLLDYQEKMEQ 589

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S  +LL+++N++LD+A +++G ++L+   + + D+   + +    +  +  I +K+  D 
Sbjct: 590 SGNLLLSIINNVLDMARIESGKVELDEDYVKIRDIYQGIYKIFQAEAEKKCIHLKMEYDV 649

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----GDFIFS--VKNNGSS 729
           K    + D  +  +IF  ++SNA+ +++ G  V ++    +            V + G  
Sbjct: 650 KHEHVICDETKNKEIFLNLISNAVKYTASGGRVTIRITELDCDRKDYVRIRTQVIDTGIG 709

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + E+   S+F  F    +   G+  G GLG+ I++ +I++  G + + S     +     
Sbjct: 710 MSEEFLPSLFEAFARERNTTDGKIAGTGLGMPIIKKYIDMMYGTIEVESKQGEGSKFTVT 769

Query: 788 I 788
           +
Sbjct: 770 L 770


>gi|118476874|ref|YP_894025.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196046439|ref|ZP_03113664.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225863262|ref|YP_002748640.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|229183592|ref|ZP_04310815.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1]
 gi|118416099|gb|ABK84518.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196022623|gb|EDX61305.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225787926|gb|ACO28143.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|228599835|gb|EEK57432.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1]
          Length = 466

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 127/280 (45%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +      LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  IRI    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++ +   +++   + +     S+K+ G  I  +  +++  RF        
Sbjct: 358 LHNVLDNAIRYTHQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKL 457


>gi|121603274|ref|YP_980603.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120592243|gb|ABM35682.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 778

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 119/758 (15%), Positives = 252/758 (33%), Gaps = 88/758 (11%)

Query: 90  DETPEIIGQLHQRIDIPQTDTDLLSFENW-------------LKFHHYIKLSKATEKLRK 136
           D  P+I+  +         +   L +  W             +     +++S+   +   
Sbjct: 38  DAMPQIVWMMRPDGQATYFNQRWLDYSGWSLKDSLGHGWIGLVHPDDSLRVSRLLVQACG 97

Query: 137 EGQSFD--LVAETQNDCAIKIEGR-VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
            G+  +        +     + GR  + S A  R     G  +++ E     + L   ++
Sbjct: 98  GGEPCEIECRLRRADGVYRWMLGRTAAQSDAAGRTTQWLGTLTDIDELKQSREILEKDLA 157

Query: 194 VFKVLFDSLDFLVW-HRDQAGDILWA--NISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
           + ++         W        ++W+  N              ++ IG      +  + +
Sbjct: 158 MNRIAGRVARLGGWAIELPERRLIWSDENCLIHDVPPGYQPTLEEGIGFFFPEHRAIVAR 217

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGEAGIAI-----DVSKEITVND 303
            +   +     +   +          +   I   +       ++I     D+S++     
Sbjct: 218 HVQDCAEHGIPYEFVLPKRTATGRHIWVRSIAEAVRDEAGKIVSIQGAFQDISEQKEAEA 277

Query: 304 QL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
           ++          L ++T    + D++    F N     + +     L       E     
Sbjct: 278 RMLALEARLTATLESITDGFCLIDKDWKFTFMNGQAQRMLKRCPEDLLGKILWQEF---- 333

Query: 360 RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENL 419
                 PE +  +  +E   S+ +      +T++LP     H  +     G  ++ F+++
Sbjct: 334 ------PEAVGTRIERECRLSMQEQRTIRLETFYLPLKTWFHFHIYPTEAGLAVY-FQDI 386

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAV-----FGPDGR-IKLSNPAFRSLWKTEENR 473
           T +          +++    +  L++ V +     F   GR I   N AF          
Sbjct: 387 TQR----RTEQAQLRLLETAVSRLNDMVVIMEAEPFDASGRRIVFVNDAFER-------- 434

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYS 529
              G    +I          ++        I S  D  + ++  + + + +     +E  
Sbjct: 435 -QTGYSRSDIIGKTPTLLWGANTCHPEVERILSAMDNWQPVRAEVVIYTKAGKELWVETD 493

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKN----------------EALRKADEIKNSFV 573
           I P+ N     T     +    ER   ++                   L  A     SF 
Sbjct: 494 IAPIANVSGKFTHWVAVERDITERRQQQQEILSLNGELEERVLLRTAQLATATRELESFA 553

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             VS++LRSPL  I  F+ LL     G ++ K   Y++ I      + +L+  +L LA +
Sbjct: 554 YSVSHDLRSPLNTIHAFSQLLLKIDGGQISDKGKHYLDRIGVGVKQMGDLIEGLLALAQL 613

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
                ++    + L+++   ++Q    +  +   ++++       S   D + L  +F  
Sbjct: 614 --SREQIKSEQVDLSNIARRIEQDCREREPQRQAQLRIQ---DGLSAQGDARLLSAVFQN 668

Query: 694 ILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           +L NA  F+S+ S   ++   +   +GD +F VK+NG+         +F  F      G 
Sbjct: 669 LLGNAWKFTSRQSLAHIEVGSESGVDGDTVFFVKDNGAGFDMAFAHKLFGTFERLHSPGD 728

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G G+GL+ V+  I  HGG V   S           +
Sbjct: 729 FSGTGIGLATVKRIIERHGGRVWAESKLNEGARFFFTL 766



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/422 (11%), Positives = 122/422 (28%), Gaps = 50/422 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-- 224
           +++ L G            +      + F++L D++  +VW     G   + N  +    
Sbjct: 5   KLIPLSGTVPGTPGRKRSDEAGRASEAQFRLLMDAMPQIVWMMRPDGQATYFNQRWLDYS 64

Query: 225 ---NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY---- 277
                ++ G  +   +     L    +  +       E    E       G  +      
Sbjct: 65  GWSLKDSLGHGWIGLVHPDDSLRVSRLLVQACGGG--EPCEIECRLRRADGVYRWMLGRT 122

Query: 278 --KIVRVLNSFGEAGIAIDVSKEITVND------QLTHTYEILHNLTVAIAIFDQNRYLQ 329
             +      +    G   D+ +     +       +      +  L    AI    R L 
Sbjct: 123 AAQSDAAGRTTQWLGTLTDIDELKQSREILEKDLAMNRIAGRVARLG-GWAIELPERRLI 181

Query: 330 FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK 389
             +     + ++   +    P+ +E + F    ++            ++    +    ++
Sbjct: 182 -WSDENCLIHDVPPGY---QPTLEEGIGFFFPEHR-------AIVARHVQDCAEHGIPYE 230

Query: 390 DTW--HLPNGQTLHVI----VTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETI 440
                    G+ + V        +  G  + +   F++++ Q + E +   L      T+
Sbjct: 231 FVLPKRTATGRHIWVRSIAEAVRDEAGKIVSIQGAFQDISEQKEAEARMLALEARLTATL 290

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           + +++G  +   D +    N   + + K     L        +     + + E+ G  + 
Sbjct: 291 ESITDGFCLIDKDWKFTFMNGQAQRMLKRCPEDL--------LGKILWQEFPEAVGTRIE 342

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
                S  ++R     T  L   +   + I P      +  +       R E+A     E
Sbjct: 343 RECRLSMQEQRTIRLETFYLPLKTWFHFHIYPTEAG--LAVYFQDITQRRTEQAQLRLLE 400

Query: 561 AL 562
             
Sbjct: 401 TA 402


>gi|317478861|ref|ZP_07938012.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905037|gb|EFV26840.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 758

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 145/330 (43%), Gaps = 13/330 (3%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SV 525
             ++   L      R +    + Y +  D       I    +      Q       +   
Sbjct: 432 CDSQFCELIHHRPGRLLLDEITPYIHPDDLPAFRKNIAARHERTHHKGQYRCNFTGEFQW 491

Query: 526 LEYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            E+S   +              N+ +    E+ L E  E L +  E+K SF+ ++S+E+R
Sbjct: 492 WEFSYNTIHTPGHAPIIAGLLQNIQELKDHEQELIESRE-LAEQAELKQSFLNNMSHEIR 550

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GF+D+L      S N ++ ++V+ I+ ++ +LL LV D+L+L+ +++G +   
Sbjct: 551 TPLNAIVGFSDMLANEPEFS-NEERQEFVDIINTNTKLLLKLVGDVLELSRIESGNLSFT 609

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +    ++ LL++V Q+ +  +    ++       +      D  RL Q+ +  L+NA  F
Sbjct: 610 FQRESVHRLLDDVYQTHSLLIRP-PLQFLKDFPPEDVQVNVDPMRLTQVLTNFLNNANKF 668

Query: 702 SSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           + KG ++ L     +G  +    V++ G  IP    K +F RF   +   Q  GVGLGLS
Sbjct: 669 T-KGGSIRLGYCCPSGMSEVHLYVEDTGIGIPHSEQKMIFERFYKRSEFSQ--GVGLGLS 725

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I    +   GG + + S +   +     +P
Sbjct: 726 ICVLIVEKMGGRIELRSEEGRGSRFTVVLP 755


>gi|260159588|gb|ACX32464.1| two-component histidine kinase [Fusarium oxysporum f. sp.
           lycopersici]
          Length = 1293

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +  T+  EA   A++  + F+ ++S+E+R+P+  IIG T L   +    L   Q + +  
Sbjct: 698 QRNTQAREAAELANKTMSEFLANMSHEIRTPMNGIIGMTQL---TFDTDLTQYQREMLNI 754

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           ++  +  LL +++DILDL+ ++A  M +      L   +    +++A K +E  + +   
Sbjct: 755 VNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKTLAVKANEKFLDLTYK 814

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-------FSV 723
            D  +    + D  RL QI   ++ NA+ F+  G   + +K +    +         F V
Sbjct: 815 VDSSVPDYVIGDSFRLRQIILNLVGNAIKFTEHGEVSLTIKESMGQNNVRPGEYAVEFVV 874

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I +D    +F+ F        R   G GLGLSI +  +NL GG + ++S     
Sbjct: 875 EDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGDLWVNSEHGKG 934

Query: 782 TTINCR 787
           +  +  
Sbjct: 935 SEFHFT 940


>gi|284035961|ref|YP_003385891.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
 gi|283815254|gb|ADB37092.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
          Length = 1406

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 90/512 (17%), Positives = 188/512 (36%), Gaps = 16/512 (3%)

Query: 289  AGIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLA 344
             G+  D +K+   +  L         ++ +L   +   D +  L + N  + ++    L 
Sbjct: 893  IGVIRDRTKKRQADQALKISEKRYRSLVDHLKDIVFQIDTSGCLTYLNPVWQKITGFSLE 952

Query: 345  FLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                 P  D +    R  N+     +    ++     +     HKD  +        + V
Sbjct: 953  ETLGKPFLDFVFPDDRERNQY--LCDQLICRQKAICQHVVRYIHKDGGYRWIDVFAQLTV 1010

Query: 405  TSNPRG-GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPA 462
                   G    F ++T +   E       +   +  +++ E   +    + +    NPA
Sbjct: 1011 NELDEVTGITGTFTDITERKKAEDALLESEQRFRDIAENVDEIFWIRDLLEPKFIYINPA 1070

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
            +          L     +                +   A   ++F    +   G+L  L 
Sbjct: 1071 YEKFTGQLAETLYENPLVFLNFILEEDRSKVLANFVDEANQDSTFQFRARHKDGSLRHLD 1130

Query: 523  DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
              +           + +    ++T ++  E  L E     R  + +K+ F+   S+E R+
Sbjct: 1131 VRLFRVVNEEGVLIRRIGMATDITTAIEKELILEESLTKERTLNALKSQFISTASHEFRT 1190

Query: 583  PLTNIIGFTDLLKT-----SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
            PL  I    +L+K      S    +    +Q++E I      L +L+ D L ++ +D G 
Sbjct: 1191 PLAAINSSVELVKHYVNVGSADTPMTKVINQHIEKICQKVFFLNDLITDTLTISKIDEGR 1250

Query: 638  MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            + +N     L +L     +   +   E+N  ++    G   +   DR+    I + +LSN
Sbjct: 1251 ITVNLELTDLIELYENTVKHYFSD-REDNRFVEFEYIGNPVTVNLDRKLTEHILTNLLSN 1309

Query: 698  AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
            A  FS+K   + +    +  + + ++++ G  IPE    ++F +F   ++    +G GLG
Sbjct: 1310 AFKFSNKNPRLTISFCTE--EVMMTIRDEGIGIPEKDIANLFGKFFRASNVTGFQGTGLG 1367

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            L+I + +I L  G ++  S +   T+     P
Sbjct: 1368 LAICQEYITLQNGRITCESREGVGTSFKVYFP 1399



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/474 (14%), Positives = 143/474 (30%), Gaps = 75/474 (15%)

Query: 122  HHYIKLSKATEKLRK-EGQSFDLVAETQNDCAI-KIEGRVSGSCAFLRILSLD------- 172
                  S+A E       Q F L    +      +      G    L I  +        
Sbjct: 560  RDNGIFSRAVEVAETGNSQQFQLKYRLKTGDLWGEYSLVRVGGNVLLTIKDISHLKETEE 619

Query: 173  GIYSELAETTLKCKKLSNHISVF----KVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
             +    AE   +    +  I       + +F      +   D  G I   N + +  T  
Sbjct: 620  QLRQSNAELEKRVAARTGEIQQLFAMQQAVFKHAGLAITATDAQGVIQLVNPALESLTGY 679

Query: 229  EGIVFQKAIGES---RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                    +        +F + + +++      +    E V      N+   +   +L  
Sbjct: 680  TADELIGKVTPRALRDPVFHQNLLQKLAPDLVDDGTGEEHVIEYIRKNDFLRRENVLLTK 739

Query: 286  FGE-AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV-------- 336
             G+   +   VS     N+ L    +I+ +++    I      L   N+           
Sbjct: 740  QGQRIPVLSTVSGLYDDNNVLIGFVDIVADISYLKTI---EHKLMQANQRSRLATMAGKL 796

Query: 337  ELWE---------IDLAFLA--TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             +WE         +D  FL     P N  + + +    ++    +   +K+N+ ++ +S 
Sbjct: 797  GVWEWNLLTNEIMMDENFLVLFGLPENASI-KRIEDLEQIVHPDDLAYFKQNVQNIIESQ 855

Query: 386  ETHKDTWHL--PNGQTLHVI-----VTSNPRG---GTIWMFENLTVQVDLETKYNTLVKV 435
            +     + +  P+ +T H +     +  N  G     I +  + T +   +       K 
Sbjct: 856  KPFDVEFRVFFPSTKTTHYLKADGLIVQNEDGINNRLIGVIRDRTKKRQADQALKISEKR 915

Query: 436  QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT----------------------EENR 473
                +DHL + V      G +   NP ++ +                         +   
Sbjct: 916  YRSLVDHLKDIVFQIDTSGCLTYLNPVWQKITGFSLEETLGKPFLDFVFPDDRERNQYLC 975

Query: 474  LSPGTHIRNIAATCSRYYNESDGW---DLFAAIITSFDDERKSLQGTLELLSDS 524
                   + I     RY ++  G+   D+FA +  +  DE   + GT   +++ 
Sbjct: 976  DQLICRQKAICQHVVRYIHKDGGYRWIDVFAQLTVNELDEVTGITGTFTDITER 1029



 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 64/158 (40%), Gaps = 13/158 (8%)

Query: 171  LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILWANISYKKNTETE 229
            + G ++++ E       L      F+ + +++D + W RD      ++ N +Y+K T   
Sbjct: 1019 ITGTFTDITERKKAEDALLESEQRFRDIAENVDEIFWIRDLLEPKFIYINPAYEKFTGQL 1078

Query: 230  GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET---VSTLEHGNNKSYKI--VRVLN 284
                 +          EE + +++++   E N   T    +  + G+ +   +   RV+N
Sbjct: 1079 AETLYENPLVFLNFILEEDRSKVLANFVDEANQDSTFQFRARHKDGSLRHLDVRLFRVVN 1138

Query: 285  SFGE----AGIAIDVS---KEITVNDQLTHTYEILHNL 315
              G      G+A D++   ++  + ++       L+ L
Sbjct: 1139 EEGVLIRRIGMATDITTAIEKELILEESLTKERTLNAL 1176


>gi|26990865|ref|NP_746290.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida KT2440]
 gi|24985876|gb|AAN69754.1|AE016611_12 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 643

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+    L+S+Q
Sbjct: 243 EQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETT---PLSSEQ 299

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y    S S+  LL ++NDILD + ++   ++L +    L +L+    QS      +  
Sbjct: 300 ADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDFNLGELITNSVQSFQHSAQQRG 359

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + + +      +      D  R+ QI   ++ NA+ F+ +G   V  +    +   I   
Sbjct: 360 LGLHLQLPAGIEQLQVNGDPTRIRQILLNLIGNALKFTERGQVQVDARWQVLDRQLIWLT 419

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV++ G  I  D  + +F  F         +  G GLGLSI  +     GG +   S +
Sbjct: 420 CSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAERMGGKLRGESRE 479

Query: 779 EGVTTINCRIPS 790
              +T    +P 
Sbjct: 480 GLGSTFTLEMPL 491


>gi|85704547|ref|ZP_01035649.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
 gi|85670955|gb|EAQ25814.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
          Length = 530

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 100/506 (19%), Positives = 189/506 (37%), Gaps = 42/506 (8%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +   +      ++   Y  L+   + +++ D    +   N +F   +    + L   P +
Sbjct: 49  LHAERVQKQGQEIELIYTALNRHAL-VSLTDSGGVITSVNENFSGRYGYLNSELVGKPIS 107

Query: 353 DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP---- 408
               +    A        ++  ++++  V     + ++     +G  ++   T  P    
Sbjct: 108 IIYPDGASDA-------VYRAARKSL--VTGDIWSGENEEIAADGSRIYTRCTLVPVMDD 158

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLW 467
            G  +   E  T   D         +      DHL + V +F  +   +  +N A     
Sbjct: 159 HGHLVRTVEIRTDNTDF--HRAEQARFLKALFDHLQDEVYIFCVESLDMVYANHAALRAS 216

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLF--AAIITSFDDERKSLQGTLELLSDSV 525
             +   L   T + +     +  Y  +    LF     + S D  R    G         
Sbjct: 217 GWKAKDLVDKT-VLDADPNMNEKYFRAHVAPLFSGEKEVVSIDVRRGETSGE-------- 267

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +   I+   +   +   V    + R            ++ +  K   V  VS+ELR+PLT
Sbjct: 268 ISTRIVRGEDGNMLFVSVLRDSTER------------KQIERAKMESVSIVSHELRTPLT 315

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I G   LL +  LG+ + K    ++    ++  LL +V+DILDL    AG M +    +
Sbjct: 316 SIHGSLRLLDSGALGTFDPKAQSVLDIAVRNTDRLLLVVDDILDLEKFRAGKMPIEKVHV 375

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L  L+ E  +       + ++     +D +        +R++Q+ + +LSNA  +S   
Sbjct: 376 DLVSLVGEAVEINKGYGSDLHVSFAFETDLETAPIFVAPERMMQVLANLLSNAAKYSPTH 435

Query: 706 STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVES 763
            TV +    D   +  SV ++G  IPE+M  SVF  F          R+G GLG++I + 
Sbjct: 436 GTVRVGLREDGRFWQISVADDGPGIPEEMRASVFESFSKLPSLDGVTRKGTGLGMTISQK 495

Query: 764 FINLHGGHVSISSSDEGVTTINCRIP 789
            +  H G +   S     +T   R+P
Sbjct: 496 IVQAHDGEIGFDSEVGNGSTFFIRLP 521


>gi|311032628|ref|ZP_07710718.1| sensor histidine kinase [Bacillus sp. m3-13]
          Length = 462

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 8/240 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R++   +  L + D  +  F+ +VS+ELR+P++ + G+++ L+   +        ++ E 
Sbjct: 225 RSINTMSSNLDEVDRNRREFLGNVSHELRTPISYLKGYSEALEEGIIP-----IEKFAET 279

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +   +  +  LV+D+LDLA ++     +N   ++L +L+ EV      K+++ N+  +V 
Sbjct: 280 VKKETDRMERLVHDLLDLAQLEGDSYPMNKEPVILAELVKEVLDRFRLKLNDKNLIAEVQ 339

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D  +     D  RL Q+   +LSNA+ FS+   T+ +         I  +++ G  IPE
Sbjct: 340 LDEGV-VVNGDYGRLDQVIDNLLSNAIKFSANNRTIRISVVEVKTMGILKIEDEGVGIPE 398

Query: 733 DMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F RF     A   +  G GLGLSIV+  IN H G + I S     T +   IP 
Sbjct: 399 EDVPYIFERFYRVEKARTRKSGGTGLGLSIVQQIINKHEGKIHIDSKRGKGTVVTVEIPL 458


>gi|257058393|ref|YP_003136281.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256588559|gb|ACU99445.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 364

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 7/256 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +  +   ++ +  +   +      +L   ++ +   V  +++ELR+PLT + G+ + L
Sbjct: 111 NLEERMPESDIPELNQLGMSFNYMANSLENVEKRRRELVSDMTHELRTPLTVVRGYLEEL 170

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             + +        + V      +  L  L+ D+ +L+  +AG + +    I L  +L  +
Sbjct: 171 ADNSIEPSPELYLKLV----KETRRLERLIQDLQELSKAEAGYLSITLRPINLIPILIAL 226

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +  + ++ +    +K+     L   +AD  R+ QI   ++ NA+ ++  G T+ +KA R
Sbjct: 227 LEKFSDQILDEGPLLKLDYPKSLPPVLADSDRIEQILVNLIGNAIRYTETG-TITIKAWR 285

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           D      SV + G  I  +    VF RF        R   G G+GL+I    + L GG++
Sbjct: 286 DRHRVFISVIDTGIGIKPEDLPFVFERFWRADKSRSRYSGGTGIGLAITRRLVELQGGNI 345

Query: 773 SISSSDEGVTTINCRI 788
            +SS     +T    +
Sbjct: 346 EVSSQLGKGSTFTFYL 361


>gi|119471453|ref|ZP_01613894.1| hypothetical tryptophan-rich sensor protein [Alteromonadales
           bacterium TW-7]
 gi|119445552|gb|EAW26837.1| hypothetical tryptophan-rich sensor protein [Alteromonadales
           bacterium TW-7]
          Length = 903

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 551 AER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           AER  +L +  +    A+  K+ F+ ++S+E+R+PL  IIG + L   +K G    K   
Sbjct: 515 AERTSSLVKAKKQSDLANSAKSQFLANMSHEIRTPLNAIIGLSSL---AKKGDDAQKLFS 571

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           Y++ I +SS  LLNL+ND+LD++ +++  + L         L+  +           NI 
Sbjct: 572 YIKKIYSSSNSLLNLINDVLDISKIESQHLILESIAFDPKALVTRIDTMFEQSAKNKNIE 631

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFS 722
             +  +  +   F+ D  R+ QI   + SNA+ F+++GS V L    +           +
Sbjct: 632 WILKCNLPVDTWFLGDAMRIEQILLNLCSNAIKFTNEGS-VTLDIDTEFVSANKVKLSIA 690

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I +    ++FN F        R   G GLGL+I +    L GG +++ S    
Sbjct: 691 VSDTGIGIEKSQHNTLFNAFTQADSSTSRKFGGTGLGLTIAKELCLLMGGTLNLKSELGE 750

Query: 781 VTTINC 786
            +T   
Sbjct: 751 GSTFTF 756


>gi|134292637|ref|YP_001116373.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135794|gb|ABO56908.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1021

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 147/363 (40%), Gaps = 20/363 (5%)

Query: 437 GETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
              I     G+ +    D R+ L++ A   +            H  +  A  +R     D
Sbjct: 380 RSVIAMAPVGIGLVSLSDRRVMLASDALVQML---------LPHGGDHHALSARVLERYD 430

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
            +        +   E          L   ++ ++         +  F + T   R  + L
Sbjct: 431 AFVADGGRGRTLVTELAVDAHGDAPLHLEIIAHAARYQGEDVLIAVFTDTTAQRRLVQQL 490

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            E   A   A+  K+SF+   S+E+R+PL  I+G  +LL+ +   +L++ Q   V  + A
Sbjct: 491 EEAVRAADSANAAKSSFLAATSHEIRTPLNVILGNLELLERT---ALDASQQSRVRTLRA 547

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  LL +V+DILD + ++AG M +      L  ++ +   + A       + + V  D 
Sbjct: 548 SAEGLLAIVSDILDFSKIEAGAMSVESIEFELIAVIEQQLAAFAPIAKAKGLPLFVEIDA 607

Query: 676 KLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG---DFIFSVKNNGSSI 730
            +      D  RL Q+   +LSNA+ F+S+G     +    D     +   SV++ G  I
Sbjct: 608 SVEQRMRGDPTRLAQVLGNLLSNAIKFTSEGHIAARVAVWPDARGVPEVELSVEDTGIGI 667

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  +F  F        RR  G GLGL++ +  +   GG +S+ S+ +  +  +  +
Sbjct: 668 EPTQRARLFKPFSQVDASITRRYGGTGLGLALCDRLVTAMGGTLSVESTPQVGSVFSVHL 727

Query: 789 PSK 791
           P +
Sbjct: 728 PLQ 730


>gi|300928534|ref|ZP_07144059.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300463465|gb|EFK26958.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
          Length = 1197

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  I  A    D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTALVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|193213741|ref|YP_001994940.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
 gi|193087218|gb|ACF12493.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
          Length = 1332

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 114/648 (17%), Positives = 242/648 (37%), Gaps = 56/648 (8%)

Query: 177  ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRD-QAGDILW------ANISYKKNTETE 229
            ++ E     K L  +   F +  DS    VW  D   G ++W           K+     
Sbjct: 701  DITELKNAQKALEENQQRFSIAADSAGIGVWELDLVTGGMIWDEWMFKLYQKPKEAFHGN 760

Query: 230  GIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSF 286
               ++ A+     +     I+  + S S  +      +     G  +  K     + +  
Sbjct: 761  FTDWKSALAPGEFERMDPIIQSTIASKSDNDFEMSFEIIWP-SGEKRVLKTYGRALKDEA 819

Query: 287  GEA----GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            G+A    GI  D++ +    +++  + E         AIF+  + +      + E+  +D
Sbjct: 820  GKAVRLTGINYDITDKTKAEERIRKSQEKYK------AIFNTIQDV------YAEV-ALD 866

Query: 343  LAFLATNPSNDELLEFLRSA-------NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
               L  +PS  ++  + R         +     L  +  ++ +F     ++      HL 
Sbjct: 867  GTILEISPSIKKISGYSRQEMLGKNIYHFYSNPLERENLRKELFKHGYLNDYEVKLRHL- 925

Query: 396  NGQ------TLHVIVTSNPR-GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
            +G       T+ VI+  + +    +    ++T +   E       +      + + +  A
Sbjct: 926  DGAVRTCSFTVSVILDRSGQPKKIVGSMRDITDRKKAEENIRKSEEKYKAIFNTIQDVYA 985

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTH---IRNIAATCSRYYNESDGWDLFAAIIT 505
                DG I    P+           L         ++  A        S    L    + 
Sbjct: 986  EVALDGSILEITPSIERFTGYSREYLLGKKTSTLYKDPTARDRMVEELSQKGSLVDYEVV 1045

Query: 506  SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK--NEALR 563
                +  S  G+  +     L      L  +   +T     +    E+    +     L+
Sbjct: 1046 FAHKDGSSKMGSFIIGLQYDLNGKPYKLVGSMRDITERKKYEQDILEKEQRYRLLAHDLQ 1105

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            KA+     F   VS++L++PL  I   +  L +  +  L+ +  + +  +      + +L
Sbjct: 1106 KANRELKDFAYIVSHDLKAPLRAIGSLSSWLYSDYVDRLDEEGKETLSLLVGRVKRMHDL 1165

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            +  IL  + +  G +K  +  I L+ L++E+   ++   H     I V+ D  L + +A+
Sbjct: 1166 IEGILQYSRI--GRIKEAFVEIELDLLIDEIVDFLSIPKH-----ISVVKDTSLPNIIAE 1218

Query: 684  RQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
            + R++Q+F  ++SNA+ ++  +   + +    +   + F VK+NG  I E   + +F  F
Sbjct: 1219 KTRMMQVFQNLISNAVKYNDKEHGEISIGHVENGETWQFYVKDNGPGIDEKYHEKIFQIF 1278

Query: 743  VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + A R +    G+GL+IV+  I ++GG +++ S+    TT    +P 
Sbjct: 1279 QTLAPRDEHESTGIGLTIVKKIIEMYGGTIAVESTMGKGTTFWIELPK 1326



 Score = 63.4 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 115/329 (34%), Gaps = 38/329 (11%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT------ETEGIVFQK 235
               K L    + +K + ++++ +++  D+ G   + N ++++ T      E  G     
Sbjct: 331 ERSQKALLRSQAKYKSVVENIEEVIFQVDREGKCEFINEAWERITGYKPQKECLGKNLFD 390

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLE-HGNNKSYKIVRVLNSF------GE 288
             G  +    +EI + ++        F ET+      G+ +  +++ +          G 
Sbjct: 391 FFGNEKNPHFKEIGQGILEGKIPR--FYETMQLKTCDGSLRWVELMLLPRCDEPGNIIGL 448

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQ-FHNRSFVELWEI------ 341
            G  +D +K++   + L ++  I   ++    I D    L    N  F   W +      
Sbjct: 449 FGTMMDSTKQVQALESLKNSERIYRRISQ--LISDYAYRLIPLENGEFDFKWLMVGGFYS 506

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH 401
           +L FL    S     EF+      P+  +    ++      +   T +       G  + 
Sbjct: 507 NLGFLPNEVSEKAWFEFI-----YPDDRHILDLRDACLRKGEPV-TIQLRVETQEGDLIW 560

Query: 402 VIVTSNP--------RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
           +   ++P            I +  ++T++   E +           +     GV V G D
Sbjct: 561 LEDAASPFLNHETGEIEEIICVISDITMRKRAEKEIRQAHDNLKVIMRTAPFGVVVVGQD 620

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            RI+ +N   + + + +E     G    +
Sbjct: 621 QRIRWTNETVKRMARLKETDSLVGRSCSD 649



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 69/491 (14%), Positives = 149/491 (30%), Gaps = 65/491 (13%)

Query: 105 IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQS--FDLVAETQNDCAI--KIEGRVS 160
           +P   ++   FE ++       L      LR +G+     L  ETQ    I  +      
Sbjct: 511 LPNEVSEKAWFE-FIYPDDRHILDLRDACLR-KGEPVTIQLRVETQEGDLIWLEDAASPF 568

Query: 161 GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
            +     I  +  + S++       K++       KV+  +  F V    Q   I W N 
Sbjct: 569 LNHETGEIEEIICVISDITMRKRAEKEIRQAHDNLKVIMRTAPFGVVVVGQDQRIRWTNE 628

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEE----IKKRMISSSALEKNFCETVSTLEHGNNKS 276
           + K+    +          S      E       +   S +  +N  + +  L+  N   
Sbjct: 629 TVKRMARLKETDSLVGRSCSDYFCNGEKNLCPILKYGISDSKCENRFQDIHILKTVNEIV 688

Query: 277 YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
           ++   V          +D+++       L    +                     + + +
Sbjct: 689 FEGEDVFLETF-----VDITELKNAQKALEENQQRFS---------------IAADSAGI 728

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF-SVYKSSETHKD----- 390
            +WE+DL  +      DE +  L    K     N+  WK  +    ++  +         
Sbjct: 729 GVWELDL--VTGGMIWDEWMFKLYQKPKEAFHGNFTDWKSALAPGEFERMDPIIQSTIAS 786

Query: 391 ------------TWHLPNGQTLHVIVTSNPRGG-----TIWMFENLTVQVDLETKYNTLV 433
                        W     + L     +             +  ++T +   E +     
Sbjct: 787 KSDNDFEMSFEIIWPSGEKRVLKTYGRALKDEAGKAVRLTGINYDITDKTKAEERIRKSQ 846

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +      + + +  A    DG I   +P+ + +       +         +    R   E
Sbjct: 847 EKYKAIFNTIQDVYAEVALDGTILEISPSIKKISGYSRQEMLGKNIYHFYSNPLER---E 903

Query: 494 SDGWDLF-AAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNAQTMLTFVNVTDSV 549
           +   +LF    +  ++ + + L G +   S +V   L+ S  P    + + +  ++TD  
Sbjct: 904 NLRKELFKHGYLNDYEVKLRHLDGAVRTCSFTVSVILDRSGQP---KKIVGSMRDITDRK 960

Query: 550 RAERALTEKNE 560
           +AE  + +  E
Sbjct: 961 KAEENIRKSEE 971



 Score = 46.5 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 5/159 (3%)

Query: 423 VDLETKYNTLVKVQG---ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           +D E     L++ Q      ++++ E +     +G+ +  N A+  +   +  +   G +
Sbjct: 328 IDKERSQKALLRSQAKYKSVVENIEEVIFQVDREGKCEFINEAWERITGYKPQKECLGKN 387

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           + +        + +  G  +    I  F +  + K+  G+L  +   +L     P     
Sbjct: 388 LFDFFGNEKNPHFKEIGQGILEGKIPRFYETMQLKTCDGSLRWVELMLLPRCDEPGNIIG 447

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              T ++ T  V+A  +L       R+  ++ + +   +
Sbjct: 448 LFGTMMDSTKQVQALESLKNSERIYRRISQLISDYAYRL 486


>gi|157372575|ref|YP_001480564.1| aerobic respiration control sensor protein ArcB [Serratia
           proteamaculans 568]
 gi|157324339|gb|ABV43436.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568]
          Length = 779

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 145/373 (38%), Gaps = 15/373 (4%)

Query: 421 VQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            Q +L   +      +    +D   + V     D      N A   L    E +L   T 
Sbjct: 141 EQRELAQIELGQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLTGKSEKQLIGLTP 200

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                   +    E+D       +  +++       G       +  E   +P  +    
Sbjct: 201 FDVYGEEIAEKVIETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGK 255

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++ 
Sbjct: 256 RHGLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE- 312

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN +Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   +     L +++    
Sbjct: 313 --LNDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFLADLENLSG 370

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             +    ++  +     L    +AD  RL QI   ++ NA+ F+ +G  V+     +   
Sbjct: 371 LLVQPKGLQFVMEPQQPLPQQIIADGTRLRQILWNLIGNAVKFTPQGQIVVRVRREEQDR 430

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            +F V+++G  IP+D    +F  +             G G+GL++ +      GG +++S
Sbjct: 431 LVFEVEDSGMGIPQDEQDKIFAMYYQVKDQHGGRPATGTGIGLAVSKRLAQSMGGDITVS 490

Query: 776 SSDEGVTTINCRI 788
           S     +     I
Sbjct: 491 SVQGQGSCFTLSI 503



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 19/155 (12%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R   +D +  E+ +  L   +L    ++ +   D+   LV++R++  +    N + +  T
Sbjct: 129 RQQVMDKLTGEMEQRELAQIELGQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYK 278
              G   ++ IG     ++ EEI +++I +   EK F   VS           G    ++
Sbjct: 189 ---GKSEKQLIGLTPFDVYGEEIAEKVIETD--EKVFRHNVSLTYEQWLVYPDGRKACFE 243

Query: 279 I------VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           +       RV    G  G   D+++     D L +
Sbjct: 244 LRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|298290965|ref|YP_003692904.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296927476|gb|ADH88285.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 833

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 12/245 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L+   +   +A + K+ F+  VS+ELR+PLT I+G T LL+T+   SL S Q + +E 
Sbjct: 180 RKLSAATKVAEEASQAKSLFLASVSHELRTPLTAIVGMTGLLRTT---SLASDQREMIET 236

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++  L +L++ +LDL+ ++AG M +      L  LL + ++ +  +  E  +   + 
Sbjct: 237 VEVATRSLRSLIDGLLDLSRIEAGRMPVPNEPFDLVALLLDARRLVEGQARERGLSFDIH 296

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNN 726
              +     V  RQ L +    ++ NA+ F+ +G  V L    +  +      +  V + 
Sbjct: 297 VTPRTPLGLVGSRQHLHEALVNLVGNAVKFTQQGG-VTLAVDAEPAEDGRLSLVIEVSDT 355

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I     + +F  F         +  G GLGL+I    + L GG +S+ S+    +T 
Sbjct: 356 GIGIAPGDQERIFEDFTQADASILNRFGGTGLGLAITRRLVALMGGTISVDSAPGKGSTF 415

Query: 785 NCRIP 789
              +P
Sbjct: 416 RFHVP 420


>gi|294625969|ref|ZP_06704580.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292599707|gb|EFF43833.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 767

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 12/248 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+ KQ  Y 
Sbjct: 384 AWQLAMHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDIKQRSYT 440

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +   LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R  
Sbjct: 441 ESIRRAGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFS 500

Query: 671 VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
           +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 501 LEI-GLLGDITASGDCTRIRQILLNLLNNAIKFTERG-VVGLKLTTLGSYQGLRFEVADT 558

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I  +    +F RF             G GLGL+I +      GG + + S     T 
Sbjct: 559 GPGINVEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTR 618

Query: 784 INCRIPSK 791
               +P +
Sbjct: 619 FVVELPLR 626


>gi|255972660|ref|ZP_05423246.1| predicted protein [Enterococcus faecalis T1]
 gi|255963678|gb|EET96154.1| predicted protein [Enterococcus faecalis T1]
          Length = 506

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 151/382 (39%), Gaps = 31/382 (8%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 145 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 198

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSI 530
              G   +N+ +       ++D   L   ++    S   E    QG   L  D  L Y  
Sbjct: 199 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRY-- 253

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   +A          D  R  +            ++++  FV +VS+EL++P+T+++GF
Sbjct: 254 LDDQSANDYQVLGIAYDLTRVRQL-----------EKMQKDFVSNVSHELKTPVTSLLGF 302

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+ L             Q++  +   +  L  L+ +IL+L+   +  +      I L   
Sbjct: 303 TETLIDGAKED-PKVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKF 360

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+  S   ++    ++  V+       F    +    I   ++ NA+ +S K   + +
Sbjct: 361 ITEILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQKNGQITI 419

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
             A +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L 
Sbjct: 420 SYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELL 479

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG ++I S     TT    +P 
Sbjct: 480 GGKIAIDSHLGLGTTFTITLPL 501


>gi|126656663|ref|ZP_01727877.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126621883|gb|EAZ92591.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 820

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 142/333 (42%), Gaps = 13/333 (3%)

Query: 461 PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            AF      ++       H+     +       S        + T +    +  +  L  
Sbjct: 357 RAFIDFDAPDDPDGCLKMHLDEGFFSAQSTPLISRSGQFIGLLSTHWRKYHRPSERELRF 416

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           L D +   +   +   Q      ++ +  +A R      +   +A+ IK+ F+  +S+EL
Sbjct: 417 L-DLLARQATDLIEQRQAFAEHQHLLEREQAAR------KEAEQANRIKDEFLAMLSHEL 469

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           RSPL  I+G++ LL+T K  S  ++  + +  I  ++ +   L++D+LD+A +  G +KL
Sbjct: 470 RSPLNPILGWSTLLQTKKFDSATTQ--KGLSTIERNAKLQTQLIDDLLDIARILRGKLKL 527

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
             +T+ L  ++ E  + +       +I ++            D  RL Q+   +LSNA+ 
Sbjct: 528 KETTVNLVTVIEEGIEVVRRAAEAKSIALRFNL-IDSCQVRGDEGRLEQVLWNLLSNAVK 586

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGL 758
           F+ +G  VI++    +     +V + G  I  +    +F  F            G+GLGL
Sbjct: 587 FTPEGGQVIVQLEVLHDQACITVVDTGKGIKPEFLPDLFQTFCQEDISITRNYGGLGLGL 646

Query: 759 SIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
           +IV+  ++ HGG ++  S+ +    T   + P 
Sbjct: 647 AIVKYLVDAHGGSITAESAGEGQGATFTVQFPL 679


>gi|153216364|ref|ZP_01950429.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
 gi|124114317|gb|EAY33137.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
          Length = 773

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + ++N+ L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G +++     ++ I 
Sbjct: 90  IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 149

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +S   L  LV+D+LD   +  G + +    + L+     V +     + +  +RI     
Sbjct: 150 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVS 209

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            +     AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP + 
Sbjct: 210 EQPVWVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQ 268

Query: 735 CKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F   +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 269 LEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMQGTLYVSSQPMVGTTFSFTLPL 326


>gi|46912173|emb|CAG18968.1| putative sensor histidine kinase FexB [Photobacterium profundum
           SS9]
          Length = 778

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 148/379 (39%), Gaps = 17/379 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  + + + +      +    +D   + +      G     N A   L    E  L  
Sbjct: 118 NEVYQRENAQLELAEQSALLKSFLDASPDLIYYRNEKGEFSGCNRAMAELTGKTEKGLVG 177

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T     +   +    E+D       +  +++   +   G       +V E   +P    
Sbjct: 178 LTPWDVYSEEAAIKIVETDEQVFQKNVSLTYEQWLEYPDG-----RKAVFELRKVPFYRR 232

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 +        ER   +  +A  KA   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 233 DGRRLGLMGFGRDITER--KQYQDAQEKASRDKTAFISTISHELRTPLNGIVGLSRMLLE 290

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q  Y+  +  S+  L N+ NDI+D+   D   ++L    +  N+ + E++ 
Sbjct: 291 T---PLNDEQRGYMRTVHVSAITLGNIFNDIIDMDKSDRRRLELMPKPLDFNEFVTEMEN 347

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KA 712
             +    +  +R  +    KL +F+  D  RL Q+   ++ NA  F+ +G  ++    + 
Sbjct: 348 ISSLMAEQKGLRFDLERLTKLPAFIEVDSTRLRQVLWNLIGNATKFTKEGGVILSVSSEI 407

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHG 769
                +  F V+++G  IP      +F  +      +      G G+GL++    + L G
Sbjct: 408 FEHEAEITFDVEDSGIGIPASEVDKIFTMYYQVKQGSDNLHAVGTGIGLAVSRQLVQLMG 467

Query: 770 GHVSISSSDEGVTTINCRI 788
           G++ ++S     +T    I
Sbjct: 468 GNILVTSDIGEGSTFTVTI 486



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           +++  + +E+ +      +L+   ++ K   D+   L+++R++ G+    N +     E 
Sbjct: 111 IAMHDLENEVYQRENAQLELAEQSALLKSFLDASPDLIYYRNEKGEFSGCNRA---MAEL 167

Query: 229 EGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV 280
            G   +  +G +   ++ EE   +++ +   E+ F + VS           G    +++ 
Sbjct: 168 TGKTEKGLVGLTPWDVYSEEAAIKIVETD--EQVFQKNVSLTYEQWLEYPDGRKAVFELR 225

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQ 304
           +V          G  G   D+++     D 
Sbjct: 226 KVPFYRRDGRRLGLMGFGRDITERKQYQDA 255


>gi|254243036|ref|ZP_04936358.1| hypothetical protein PA2G_03824 [Pseudomonas aeruginosa 2192]
 gi|126196414|gb|EAZ60477.1| hypothetical protein PA2G_03824 [Pseudomonas aeruginosa 2192]
          Length = 595

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 151/357 (42%), Gaps = 19/357 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +F   GRI+ +NP    + +   +    G  I  I +       
Sbjct: 257 ERRLQAVLDSIDDGLVIFDNQGRIEHANPVA--IRQLFVSNDPHGKRIDEILSDVD---- 310

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                 +  A++    DE              +L +S+ P+ +         +      E
Sbjct: 311 --VQEAVEKALLGEVQDEAMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRDVTE 368

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +            + +++ FV   S+ELR+P+T +     LL+        S+++  ++ 
Sbjct: 369 QR---------AFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLIQT 419

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +    + L+ L+ND+L+ +    G+ KL  ++  L DLL + +Q    K     + +++ 
Sbjct: 420 VDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQLE 479

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +L     DR ++ ++   +L NA+  SS+G  + L+A R     + +V++NG  IP 
Sbjct: 480 LGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGIPF 539

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  FV      ++ G GLGL++ +  I LHGG +++ S           +P
Sbjct: 540 SQQGRIFEPFVQVG--RKKGGAGLGLALCKEIIQLHGGRIAVRSQPGQGARFYMLLP 594


>gi|318042212|ref|ZP_07974168.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CB0101]
          Length = 665

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 157/412 (38%), Gaps = 56/412 (13%)

Query: 416 FENLTVQVDL--ETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           F ++  Q++   E     L   Q      I  +++G  +   +GR+ L NP  R L++ E
Sbjct: 255 FNDMASQLEAYNEANIEELTAAQVKQQSLIATMADGALLLDAEGRVVLVNPTARRLFRWE 314

Query: 471 ENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
             +L        +    +            G    + +  +F +  ++L+  L+ + D+ 
Sbjct: 315 GRKLEGALVGEELPDVLALELQTPLETLLSGERDSSDVRCNFGEPPRTLRIVLQSVRDA- 373

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                    + +++         +  E  L          +  ++ F+ +VS+ELR+PL 
Sbjct: 374 ---------SGESLKGIAVTVQDLTREVEL----------NAAQSRFISNVSHELRTPLF 414

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           NI  + + L           + +++   +  +  L  LVND+LDL+ +++     +   +
Sbjct: 415 NIKSYVETLHDLGDQLSEEDRKEFLAIANDETDRLTRLVNDVLDLSRLESDR-TWSMEPV 473

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L   + +  ++      +  + + +  D +L     +   LLQ+F  ++ N + F++ G
Sbjct: 474 ELRPAMEQTLRNYRLNAQDKGVELSLEVDEQLPRVRGNWDLLLQVFDNLVGNGLKFTASG 533

Query: 706 STVILKAARDNG------------------------DFIFSVKNNGSSIPEDMCKSVFNR 741
             ++L+A                                  + + GS I  +  + +F R
Sbjct: 534 GRLMLRAYPWPDTCLIDPSTEATGDSPTCALTAPLPRLRVEIADTGSGISREDQERIFER 593

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F    +      G GLGLSIV   +  HG  V + S     TT    +P ++
Sbjct: 594 FYRVENAVHTEVGTGLGLSIVRGILEKHGTQVRMVSELGVGTTFWFDLPLEQ 645



 Score = 38.4 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 15/141 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +         ++  +     + D    +   N +   L+  +   L      +EL + 
Sbjct: 271 EELTAAQVKQQSLIATMADGALLLDAEGRVVLVNPTARRLFRWEGRKLEGALVGEELPDV 330

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GT 412
           L    + P         E + S  + S   +  +  P  +TL +++ S          G 
Sbjct: 331 LALELQTP--------LETLLSGERDSSDVRCNFGEP-PRTLRIVLQSVRDASGESLKGI 381

Query: 413 IWMFENLTVQVDLETKYNTLV 433
               ++LT +V+L    +  +
Sbjct: 382 AVTVQDLTREVELNAAQSRFI 402


>gi|328880420|emb|CCA53659.1| putative two-component system sensory histidine kinase [Streptomyces
            venezuelae ATCC 10712]
          Length = 1337

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 139/318 (43%), Gaps = 16/318 (5%)

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
              +R     D     A  + S  +E +  Q  L+  +  + E +   L   Q        
Sbjct: 696  ANARTDELLDESQRLAGELRSRTEELQVRQEELQRSNAELEEKAA--LLATQNRDIEAKN 753

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                +A + L ++ + L  A   K+ F+ ++S+ELR+PL +++    LL  +   +L +K
Sbjct: 754  LQIEQARQELEDRAQQLALASTYKSEFLANMSHELRTPLNSLLILAQLLAQNPTRNLTAK 813

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            Q +Y   I ++ + LL L+NDILDL+ V+AG M  N   + L  LL+ V+ +      + 
Sbjct: 814  QVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDFNPERVPLRRLLDYVEATFRPLTTQK 873

Query: 666  NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVI-----------LKAA 713
            ++   V +   +    V D  RL Q+   +LSNA+ F+  GS  +           +   
Sbjct: 874  SLAFSVTTAAGVPVDLVTDDSRLRQVLRNLLSNAVKFTEHGSVELRIEPASDAELPVPVH 933

Query: 714  RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGH 771
            R      F V + G  I  +  +++F  F        R   G GLGLSI      L GG 
Sbjct: 934  RGGPVVAFRVTDTGIGIAPENLEAIFGAFQQADGTTNRKYGGTGLGLSISREIAFLLGGA 993

Query: 772  VSISSSDEGVTTINCRIP 789
            ++++S     +T    +P
Sbjct: 994  LTVTSVAGEGSTFTLYLP 1011


>gi|325265248|ref|ZP_08131973.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324029427|gb|EGB90717.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 852

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 153/376 (40%), Gaps = 39/376 (10%)

Query: 449 VFGPDGRIKLSNP--AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +  PDG   + NP       +   + +  P T+  +   +   + N       +AA +  
Sbjct: 200 IIRPDGSFVIRNPNTELWEFFNRLQKQFDPATNKSSADESLEEFGNALKDHREYAATLEV 259

Query: 507 FDDERK--------SLQGTLELLSDSVLEYSIIPLPNAQTMLT----------------F 542
             +ER+        S    + ++   +L+ +I  L + + ++T                 
Sbjct: 260 NGEERQLYGIPLPYSEWYLVAVMPYGILDDTINNLSSQRMIMTLLSCASVLIILTLIFLR 319

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                  +    L    +   +A + K+ F+ ++S+++R+P+  I+G T +   +     
Sbjct: 320 YFSMTRCQLN-ELEMARQVALEASKAKSEFLANMSHDIRTPMNAIVGMTAI--ATAHMDD 376

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +    ++ I+ S   LL L+ND+LD++ +++G + L    I L +++  +   +  ++
Sbjct: 377 REQLQNCLKKITLSGKHLLGLINDVLDMSKIESGKLTLTTEQISLKEVVEGIVNIMQPQV 436

Query: 663 HENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
           +     + +  +  L      D  RL Q+   +LSNA  ++ +G ++ L    +      
Sbjct: 437 NAKKQTLDIHVENILTENVWCDGIRLNQVLLNLLSNATKYTQEGGSIRLSLFEEKSLKGE 496

Query: 718 ---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHV 772
                  +VK+NG  +  D  K +++ +         +  G GLG++I +  ++   G +
Sbjct: 497 NYVRIHINVKDNGIGMSPDFVKKIYDSYSRADGARIHKTEGAGLGMAITKYIVDAMEGTI 556

Query: 773 SISSSDEGVTTINCRI 788
            + S  +  T  +  +
Sbjct: 557 DVQSEPDKGTEFHITL 572


>gi|317475679|ref|ZP_07934939.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908135|gb|EFV29829.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1354

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 10/254 (3%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +      ++   +  ER      E   + +++K  F  ++S+ELR+PLT I+        
Sbjct: 808  RFFWLRKSMEAKLEMERR---DKEHREEINQMKMRFFINISHELRTPLTLILAPLQ---- 860

Query: 597  SKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +  +N +     +EYI  ++  LL+LVN ++D    + G+ +L       + L+ E  
Sbjct: 861  EVISKINDRWARNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKANADRLIRENF 920

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                       I     S+ +    + D   L  I + +LSNA  ++  G ++ +    +
Sbjct: 921  LYYDKLARHKEISYTFHSELEDKEEIFDPHYLELIINNLLSNAFKYTDNGKSITVTLKEE 980

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            N   +  V + G  IP +    +F RF       Q  G G+GLS+V+  + LH GH+ + 
Sbjct: 981  NNWLVLQVSDTGIGIPMNKQGKIFERFYQVES--QHIGSGIGLSLVQRLVELHHGHIELE 1038

Query: 776  SSDEGVTTINCRIP 789
            S +   +T    +P
Sbjct: 1039 SEEGKGSTFFVYLP 1052


>gi|304392331|ref|ZP_07374272.1| two-component sensor/response regulator hybrid [Ahrensia sp.
           R2A130]
 gi|303295435|gb|EFL89794.1| two-component sensor/response regulator hybrid [Ahrensia sp.
           R2A130]
          Length = 708

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 143/367 (38%), Gaps = 32/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     ++     +   + +     DG ++ +N  + SL+  +   L       +I A  
Sbjct: 124 EIRESEELHRSVAEAFGDVLIQRNRDGDVRHANETYSSLFDQQRFALPE----SDIDAGT 179

Query: 488 SRYYNES-DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                E+  G   FA       D +  + G   +  D                     +T
Sbjct: 180 RDIMVETTQGQRWFAWRDLPARDLQSGMMGIRSIARD---------------------IT 218

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                E  L     A + A E K+ F+  +S+E+R+PL  ++G   LL  +    L++ Q
Sbjct: 219 ARKNHEHELAAAAAAAQAASEAKSRFLATISHEVRTPLNGVMGVAQLLART---PLDATQ 275

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++  +  S   LL L+ D+LD A ++ G + +    + L  LL  V   +A++    +
Sbjct: 276 RDHLSILKTSGDTLLALIEDLLDTARMEQGDLSIQTEPVKLEQLLEGVAAMMASRAAAKS 335

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + I    D  L +  +AD  RL Q+   +L NA+ F+ +GS  +        +    V +
Sbjct: 336 LPISTYIDPTLPASILADGGRLRQVLVNLLGNALKFTDQGSVSLCAHRHSIDELCLVVSD 395

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I +     +F  FV           G GLGL+I    +   GG +S+S+  +  + 
Sbjct: 396 TGPGIADKDRDRIFQPFVQTDDGSTRAHNGAGLGLAISRHIVVRMGGDISVSTGKDSGSV 455

Query: 784 INCRIPS 790
               +P 
Sbjct: 456 FTVTLPL 462


>gi|256853259|ref|ZP_05558629.1| sensory box histidine kinase [Enterococcus faecalis T8]
 gi|256711718|gb|EEU26756.1| sensory box histidine kinase [Enterococcus faecalis T8]
          Length = 587

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 155/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L            +Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 449 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|254567876|ref|XP_002491048.1| Histidine kinase osmosensor that regulates a MAP kinase cascade
           [Pichia pastoris GS115]
 gi|238030845|emb|CAY68768.1| Histidine kinase osmosensor that regulates a MAP kinase cascade
           [Pichia pastoris GS115]
 gi|328352426|emb|CCA38825.1| Hybrid signal transduction histidine kinase J [Pichia pastoris CBS
           7435]
          Length = 1113

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 19/248 (7%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG T L   ++   L   Q + +  +   + 
Sbjct: 479 REAAELANSAKSEFLANMSHEIRTPMNGIIGMTQLTLETE---LTQYQREMLSIVHNLAN 535

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      L   +    +++A K  E  + +    D    
Sbjct: 536 SLLTIIDDILDISKIEANRMTVEQIAFSLRGTVFGALKTLAVKAIEKQLDLIYQVDNSFP 595

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------DNGD---FIFSVKNNGS 728
            + + D  RL Q+   +  NA+ F++ G  V L   +      +N +     F V + G 
Sbjct: 596 DNLIGDSFRLRQVILNLAGNAIKFTTHG-KVTLTVKKAARIVSNNDEKLLLEFCVSDTGI 654

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ED    +F+ F        R   G GLGLSI +  I+L GG + ++S     +    
Sbjct: 655 GIEEDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIHLMGGEIWVTSGYGAGSNFFF 714

Query: 787 RI---PSK 791
            I   P+K
Sbjct: 715 TIAVSPAK 722


>gi|229589254|ref|YP_002871373.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361120|emb|CAY47983.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 782

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 138/333 (41%), Gaps = 11/333 (3%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           +  L +     +   +H R     C   +   +   L       F++    +Q       
Sbjct: 193 YVMLTQPLVRIIRELSHRRQARLDCPPGHEHDEIGVLVNVANQQFENMETEIQQRRH-AE 251

Query: 523 DSVLEY--SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           D + EY   +  + +A+T+    +     ++   L           + + +F+ ++S+E+
Sbjct: 252 DRLTEYLGQLEDIVSARTLELKASNQQLSQSNAELEAAKMHALGMAQARAAFLANMSHEI 311

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL  ++G   L   S    LN++Q Q +     S  +L+ L+NDILDL+  DAG ++L
Sbjct: 312 RTPLNGLLGMIAL---SLDSPLNAEQRQQLSIAHDSGKVLVELLNDILDLSKFDAGQLEL 368

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAM 699
                 L  L+ +    ++      ++ +  + D +  +  + D  R+ QI S +LSNA+
Sbjct: 369 ERIPFDLGSLVEDTANLLSQNAAP-SVELTCLIDPQFPAQVLGDPTRVRQIVSNLLSNAL 427

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLG 757
            F+  G  V ++ +   G     V + G  I ++    +F  F         Q  G GLG
Sbjct: 428 KFTRFG-RVDVRLSALEGRVRIEVCDTGIGIAQEAQVKIFQPFTQAGAGITRQFGGTGLG 486

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L++  +      G +SISS     +     +P 
Sbjct: 487 LALTHNLCEAMKGRLSISSEVGFGSQFCADLPL 519


>gi|218245357|ref|YP_002370728.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218165835|gb|ACK64572.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 364

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 7/256 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +  +   ++ +  +   +      +L   ++ +   V  +++ELR+PLT + G+ + L
Sbjct: 111 NLEERMPESDIPELNQLGMSFNYMANSLENVEKRRRELVSDMTHELRTPLTVVRGYLEEL 170

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             + +        + V      +  L  L+ D+ +L+  +AG + +    I L  +L  +
Sbjct: 171 ADNSIEPSPELYLKLV----KETRRLERLIQDLQELSKAEAGYLSITLRPINLIPILIAL 226

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +  + ++ +    +K+     L   +AD  R+ QI   ++ NA+ ++  G T+ +KA R
Sbjct: 227 LEKFSDQILDEGPLLKLDYPKSLPPVLADSDRIEQILVNLIGNAIRYTETG-TITIKAWR 285

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           D      SV + G  I  +    VF RF        R   G G+GL+I    + L GG++
Sbjct: 286 DRHRVFISVIDTGIGIKPEDLPFVFERFWRADKSRSRYSGGTGIGLAITRRLVELQGGNI 345

Query: 773 SISSSDEGVTTINCRI 788
            +SS     +T    +
Sbjct: 346 EVSSQLGKGSTFTFYL 361


>gi|218128498|ref|ZP_03457302.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
 gi|217989389|gb|EEC55702.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
          Length = 1354

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 10/254 (3%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +      ++   +  ER      E   + +++K  F  ++S+ELR+PLT I+        
Sbjct: 808  RFFWLRKSMEAKLEMERR---DKEHREEINQMKMRFFINISHELRTPLTLILAPLQ---- 860

Query: 597  SKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              +  +N +     +EYI  ++  LL+LVN ++D    + G+ +L       + L+ E  
Sbjct: 861  EVISKINDRWARNQLEYIQRNANRLLHLVNQLMDYRRAELGVFELKVKKANADRLIRENF 920

Query: 656  QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                       I     S+ +    + D   L  I + +LSNA  ++  G ++ +    +
Sbjct: 921  LYYDKLARHKEISYTFHSELEDKEEIFDPHYLELIINNLLSNAFKYTDNGKSITVTLKEE 980

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
            N   +  V + G  IP +    +F RF       Q  G G+GLS+V+  + LH GH+ + 
Sbjct: 981  NNWLVLQVSDTGIGIPMNKQGKIFERFYQVES--QHIGSGIGLSLVQRLVELHHGHIELE 1038

Query: 776  SSDEGVTTINCRIP 789
            S +   +T    +P
Sbjct: 1039 SEEGKGSTFFVYLP 1052


>gi|331002564|ref|ZP_08326080.1| hypothetical protein HMPREF0491_00942 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408292|gb|EGG87768.1| hypothetical protein HMPREF0491_00942 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 466

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 126/253 (49%), Gaps = 7/253 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +  +       L   ++ L   +  +  F+ ++S++ RSPLT+I G+ + +    + S 
Sbjct: 217 HSNDEMGYLAATLNYMSDKLDDTENYQKKFISNISHDFRSPLTSIKGYLEAILDGTIPS- 275

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
              Q +Y++ +   +  L  L   +L L ++++  +KLN ++  +N ++ +   S   + 
Sbjct: 276 -EMQEKYLQRVIDETNRLTKLTESLLSLDSIES--VKLNKTSFDINKVIRDTASSFEVQC 332

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
           +  NI I++I        +AD  ++ Q+   ++ NA+ FSS+ S++I++ +        S
Sbjct: 333 NSKNITIELILINVSQYVIADLSKIQQVLYNLIDNAIKFSSQNSSIIIQTSLKKEKIFIS 392

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           VK+ G  I ++    VF+RF  +       ++G GLGL+IV+  +  HG ++ + S+   
Sbjct: 393 VKDTGIGIAKNEQSKVFDRFYKSDLSRGKDKKGTGLGLAIVKEILQTHGENIDVISTVGI 452

Query: 781 VTTINCRIP-SKE 792
            T     +P SKE
Sbjct: 453 GTEFIFSLPVSKE 465


>gi|293382857|ref|ZP_06628775.1| sensory box histidine kinase [Enterococcus faecalis R712]
 gi|293389656|ref|ZP_06634111.1| sensory box histidine kinase [Enterococcus faecalis S613]
 gi|307269515|ref|ZP_07550854.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|307273087|ref|ZP_07554333.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|312901892|ref|ZP_07761157.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|312907672|ref|ZP_07766663.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|312910289|ref|ZP_07769136.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|291079522|gb|EFE16886.1| sensory box histidine kinase [Enterococcus faecalis R712]
 gi|291081049|gb|EFE18012.1| sensory box histidine kinase [Enterococcus faecalis S613]
 gi|306510072|gb|EFM79096.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|306514135|gb|EFM82711.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|310626700|gb|EFQ09983.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|311289562|gb|EFQ68118.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|311291085|gb|EFQ69641.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|315037116|gb|EFT49048.1| PAS domain S-box [Enterococcus faecalis TX0027]
 gi|315144943|gb|EFT88959.1| PAS domain S-box [Enterococcus faecalis TX2141]
 gi|315162379|gb|EFU06396.1| PAS domain S-box [Enterococcus faecalis TX0645]
 gi|315168898|gb|EFU12915.1| PAS domain S-box [Enterococcus faecalis TX1341]
 gi|315576087|gb|EFU88278.1| PAS domain S-box [Enterococcus faecalis TX0309B]
 gi|315580661|gb|EFU92852.1| PAS domain S-box [Enterococcus faecalis TX0309A]
          Length = 591

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 152/382 (39%), Gaps = 31/382 (8%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSI 530
              G   +N+ +       ++D   L   ++    S   E    QG   L  D  L Y  
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRY-- 338

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   +A          D  R  +            ++++  FV +VS+EL++P+T+++GF
Sbjct: 339 LDDQSANDYQVLGIAYDLTRVRQL-----------EKMQKDFVSNVSHELKTPVTSLLGF 387

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+ L            +Q++  +   +  L  L+ +IL+L+   +  +      I L   
Sbjct: 388 TETLIDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKF 445

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +
Sbjct: 446 ITEILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITI 504

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
             A +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L 
Sbjct: 505 SYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELL 564

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG ++I S     TT    +P 
Sbjct: 565 GGKIAIDSHLGLGTTFTITLPL 586


>gi|153864505|ref|ZP_01997387.1| two-component system sensory histidine kinase [Beggiatoa sp. SS]
 gi|152146000|gb|EDN72613.1| two-component system sensory histidine kinase [Beggiatoa sp. SS]
          Length = 529

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 7/241 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               +   +A   K+ F  ++S+E  +P+  I+G+ ++L+        +   Q V+ + A
Sbjct: 15  RPTKQKAEEAKMAKSQFFANMSHEFGTPMNTIVGYPEMLEEEIKECERASLLQDVKNVHA 74

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++  LL L++ ILD++ ++AG M+L      L  ++     +I   +      + ++ D 
Sbjct: 75  AAKHLLGLIDGILDISKIEAGKMQLYSERFDLKGMIQNTLTTIQPLIENKANTLHLLCDK 134

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIP 731
            LG    D  ++ QI   +LSNA  F+ +G  + L+  R    +     F + + G  + 
Sbjct: 135 NLGEVYTDLTKMRQILFNLLSNASKFTERG-IITLEVRRETKKEGDWITFRITDEGIGMT 193

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +   ++F  F        R   G GLGL+I + F  + GG +++ S     +     +P
Sbjct: 194 TEQQANLFQVFTQADASTSRKYGGSGLGLAITKYFTQMLGGTINVESEFSKGSHFIVHLP 253

Query: 790 S 790
           +
Sbjct: 254 T 254


>gi|310657555|ref|YP_003935276.1| sensor histidine kinase [Clostridium sticklandii DSM 519]
 gi|308824333|emb|CBH20371.1| sensor histidine kinase [Clostridium sticklandii]
          Length = 474

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 4/244 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +    +    E + K D+IK  F+  +S+ELR+PLT+I G+++ L   +  S N   
Sbjct: 232 EIGQLTETMNYMAEEILKTDKIKKDFISSISHELRTPLTSIKGWSETLMMEESVSQNEAL 291

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  IS  +  L ++V ++LD + +++  MK+    I    +L +V + +  +    +
Sbjct: 292 GMGLGIISGEADRLKDMVEELLDFSRLESSRMKVVKRKINPKHVLEQVYRQLQPRAA--H 349

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +     GK    + D  RL Q+F  +L+NA+ F+  G +V ++A   +   I    + 
Sbjct: 350 ITLSCNKIGKDTMIMGDENRLRQVFINLLANAIKFTPAGGSVQIEAEGQDEQIIIRFIDT 409

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I ++   +V  +F          G GLGLSIV+  + LH     I S     TT+  
Sbjct: 410 GLGISKEDLPNVTQKFYKG--NQTMAGSGLGLSIVDEILKLHDAKFYIDSKLGEGTTVTV 467

Query: 787 RIPS 790
            IP+
Sbjct: 468 IIPA 471


>gi|297529462|ref|YP_003670737.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297252714|gb|ADI26160.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 468

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 15/293 (5%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             ++    +  ++++   E +++   E  I             +  +  R   A  +  +
Sbjct: 183 RRMVRQMTEPLQAMEQAAERMAEGRYEADI----------PVRSDDEIGRLAEAFNQMAD 232

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A+ K DE K  F+ +VS+ELR+PL+ + G+++ L    L     ++  Y+  I   +  +
Sbjct: 233 AIAKEDERKREFLANVSHELRTPLSYMKGYSEALLAG-LAKTKEEEKAYLRLIHRETERM 291

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV D+LDLA ++   + L  + +    ++ +V  +      +  I +    D  +   
Sbjct: 292 ERLVRDLLDLARLEGQSVPLERAPVAFAQVIEDVIATYEPIAAQKRIELACELDYDII-V 350

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVF 739
             D  RL Q+   +L NA+ ++ +G  + ++ +R    +    +++ G  IP+D    + 
Sbjct: 351 NGDADRLEQVVRNLLDNAIRYTPEGGVMTVRLSRLSEAEGELVIQDTGKGIPKDQLPFLG 410

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            RF        R   G GLGL+IV+  ++LH G +   S      T+  R+P 
Sbjct: 411 QRFFRVDRARTRKEGGTGLGLAIVKQIVSLHDGAIRFDSDLGRGMTVFVRLPL 463


>gi|170077522|ref|YP_001734160.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp.
           PCC 7002]
 gi|169885191|gb|ACA98904.1| two-component hybrid sensory kinase; GAF domain [Synechococcus sp.
           PCC 7002]
          Length = 760

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 134/304 (44%), Gaps = 16/304 (5%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS-----VRAERALTE 557
           I       R+  +  +  LS  V EY  I +  A++         S      R  R L +
Sbjct: 313 IAHQCHGPRRWRKNEITFLS-HVAEYLAIAILQARSYQQLQEQKTSLETLAQRRARELED 371

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-----TSKLGSLNSKQSQYVEY 612
              + + A + K  F+  +S+EL +PLT+IIG ++ L       +       KQ  Y++ 
Sbjct: 372 ALLSAQVASQSKKEFIHIMSHELLTPLTSIIGLSNTLSYWTADDNPKKLSPEKQRVYLQT 431

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S T L NL+ DILD +  +A    L+     L  L   V            I +K I
Sbjct: 432 IHESGTRLRNLLQDILDFSQTEAARSVLDLQKFSLKQLCYRVLNGFQELGDRQGINLKFI 491

Query: 673 --SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSS 729
              + +  SF AD  RL +I S +LSNA+ F+S G  V     R+   D  F VK+ G  
Sbjct: 492 NQLEPEQDSFYADPIRLEKILSHLLSNAIKFTSHGGEVTFSIWREKQKDVSFQVKDTGIG 551

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +F +F        RR  G G GL++V+  + +H G + ++S+ +  +    R
Sbjct: 552 IPPQQIPLLFEQFQQLEPSMSRRYDGAGFGLALVKQLVEIHQGQIHVTSTPKKGSIFTVR 611

Query: 788 IPSK 791
           IP++
Sbjct: 612 IPNQ 615


>gi|107103463|ref|ZP_01367381.1| hypothetical protein PaerPA_01004533 [Pseudomonas aeruginosa PACS2]
          Length = 1212

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 161/394 (40%), Gaps = 25/394 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G   +    + V+  +E   +  ++      D +   + V   +GR+   N ++      
Sbjct: 550 GWVTYQRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGL 609

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVL 526
               +      R +       +   +    F         E ++++    +     +  +
Sbjct: 610 SSEEVMN----RTVLELPMENF---ETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWI 662

Query: 527 EYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           ++ I P  ++       +  ++++T+  +    L E      +A   K +F+  +S+E+R
Sbjct: 663 DHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIR 722

Query: 582 SPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +P+  +IG  +L LK ++ G ++      +E   AS+  LL L+ DILD+A +++G + L
Sbjct: 723 TPMNAVIGILELALKRAETGRVD---RSSIEIAYASAKSLLELIGDILDIARIESGRLSL 779

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAM 699
           +     L +L+  V +       +  + + +  D  + G  + D  R  QI S ++SNA+
Sbjct: 780 SPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAI 839

Query: 700 DFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGV 754
            F+ +GS  + +   +     +     V++ G  I     + +F  F           G 
Sbjct: 840 KFTDEGSIRIRIDGRQVEPSLLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQNTEGT 899

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL I  S   + GG + +SS     T I+  +
Sbjct: 900 GLGLVISRSLCEMMGGRLVMSSELGQGTRIDVEL 933



 Score = 41.9 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG--- 230
              ++       + LS+ +   + L D +   ++ RD  G +L  N SY ++        
Sbjct: 555 QRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEV 614

Query: 231 -----IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                +       E+   F       M     +E  +   +   E   +   +  R  + 
Sbjct: 615 MNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSG 674

Query: 286 F--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              G     +D+++   + D+L     +    + A   F
Sbjct: 675 TIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTF 713


>gi|49480228|ref|YP_034908.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331784|gb|AAT62430.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 463

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELSSSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKETTS 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 267 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSQIHISVIEENKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITMEDEGEGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFTISLPS 455


>gi|46579095|ref|YP_009903.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46448508|gb|AAS95162.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232939|gb|ADP85793.1| histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 667

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 160/373 (42%), Gaps = 36/373 (9%)

Query: 436 QGETIDHLSEGV--AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
              T++ L   V       DG I  +    R      + RL  G  +       +++   
Sbjct: 19  LRRTLEGLGYIVPAVETDADGAIDAA-KRLRPDLVLMDIRLRRGDGVDAAHVITNQF--- 74

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
               D+    +T+F DE  +L   ++        + + P    +   T        RA R
Sbjct: 75  ----DIPVVFLTAFSDE-ATLSRAMKA---GPFGFLVKPFAERELYSTIEVALLKHRAVR 126

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            + E  +A   A   K SF+  +S+E+R+ L  I+G T+L+  +    L+ +Q + +  +
Sbjct: 127 EIDEARQAAEHASLAKTSFLAGMSHEIRNTLNGIVGMTELVLDT---PLSGEQRESLNTV 183

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            ASS  LL L++D+LD + ++A  ++L      L+ LL +V Q+  ++    NI +    
Sbjct: 184 LASSETLLTLLHDVLDFSRLEARQLRLVERPFSLDRLLKQVVQASRSEAERKNISLDFRV 243

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNG-------------- 717
              +      D  RL Q+ + ++ NA+ F+ KGS +I + A   +               
Sbjct: 244 TPDVPDRLTGDATRLTQVLANLVGNAVKFTHKGSVIIEVSAIPQDQTLLESLFPDGPPSS 303

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSI 774
              +FS+++ G  I ++  +++F  F   A     +  G GLGL+I  + + + GG +  
Sbjct: 304 LTLLFSIRDTGIGIADEHLRTIFEAFSQGAEETVQRYGGTGLGLAICRNLVEIMGGSIWA 363

Query: 775 SSSDEGVTTINCR 787
            SS+   ++ +  
Sbjct: 364 RSSEGQGSSFHFT 376


>gi|224540211|ref|ZP_03680750.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518173|gb|EEF87278.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 87/384 (22%), Positives = 171/384 (44%), Gaps = 33/384 (8%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT------EENRLSPGTHIRNI 483
              +      + +++    +   D  +  +N  + SL K          +L    H RN 
Sbjct: 14  QRKLDQTTMILQNINAYFLLIDKDFIVCDTN--YYSLNKLPAPEVGMAQKLGDLLHCRNA 71

Query: 484 AATCS-RYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLEYSIIPLP------ 534
           A       + +     +  AI  +F  +   + +  ++ LL+D   E  +IP        
Sbjct: 72  AEAGECGMHQQCKLCGIRTAIGRAFHKKESFQKVNASMNLLNDK--EDKVIPCDVSVSGA 129

Query: 535 ------NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     +LT  +VT+    +R L  + +    A+ +K++F+ ++S+E+R+PL  I+
Sbjct: 130 YVVINGEDHMVLTVYDVTELQNVQRLLNIERKNSISAERLKSTFIANISHEVRTPLNAIV 189

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           GF+ L+ T    S   ++  Y++ IS ++  LL L+NDI DL+ ++AG +   YS    N
Sbjct: 190 GFSGLIAT---ASDEEEKKLYMDIISENNERLLRLINDIFDLSQIEAGTLNFEYSEFDAN 246

Query: 649 DLLNEVKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           DLL E++     K+  N ++ +      +     ++RQR++Q+ + ++ NA+ F+  G  
Sbjct: 247 DLLRELEGMFKVKLFNNPSVDLICEDSVQSIIMYSERQRIIQVMANLIHNAIKFTKSG-K 305

Query: 708 VILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFIN 766
           +      +   +  F V + G  IP++  + +F+ F       +  G GLGL++ +  I 
Sbjct: 306 IRFSCRMEGTDEVYFYVSDTGIGIPKEEQQEIFSSFKKLD--REVPGTGLGLTLSQIIIQ 363

Query: 767 LHGGHVSISSSDEGVTTINCRIPS 790
             GG   + S     +T    +P 
Sbjct: 364 NLGGRAGLESEVNKGSTFWFVVPL 387


>gi|58424553|gb|AAW73590.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1217

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 186/471 (39%), Gaps = 32/471 (6%)

Query: 336  VELWEIDLAFLATNPSNDELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             +L  +    +    ++   ++   L      P  +  + W +    +  +S        
Sbjct: 614  ADLQALAERVVGERHAHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAA---- 669

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                 +  +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD
Sbjct: 670  -----SARLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPD 724

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R+   N  ++ L+   +  L  G  + ++    +      +G D+   I       R  
Sbjct: 725  MRLTAWNRRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAG 783

Query: 514  LQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
                 E       V+E     LP    + ++ ++TD  RAERAL + NE L +       
Sbjct: 784  SPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSR 843

Query: 566  -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                  + K  F+  +S+++  PL     F   L+ S     N +Q    E + AS    
Sbjct: 844  EAELAQQSKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAA 901

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              L++ +LD++ +DAG ++        + L++E+    A       +R++V S  +    
Sbjct: 902  EELLDGLLDVSRLDAGGLRPTVEGFDASALMHELAAQYAPVAASRGLRLQVHS--RPIWV 959

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +DR+ L ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F 
Sbjct: 960  RSDRRLLRRVMQNFLANALRYTRQG-RIVLGMRGRGQQVELQVWDTGPGIPEHHMRQIFE 1018

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F           +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 1019 EFRRYQQPFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1069



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 629 AHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 688

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 689 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 748

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 749 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 807

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 808 GGYVTSYNDITDYKRAERALLDANENLEQ 836


>gi|74312918|ref|YP_311337.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella sonnei Ss046]
 gi|73856395|gb|AAZ89102.1| putative sensor for regulator EvgA [Shigella sonnei Ss046]
          Length = 1197

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            ++   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YSTGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALICSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|220907214|ref|YP_002482525.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863825|gb|ACL44164.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1419

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 8/248 (3%)

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                AER    + E     + +K+ F+  +S+ELRSPL  I+G+T LL++        K 
Sbjct: 1033 QLYEAERQARAEAEQA---NRVKDEFLAVLSHELRSPLNPILGWTKLLQSQPFSP--DKA 1087

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++ +  I  +  +   L+ D+LD++ +  G M LN +++ L  ++    +++        
Sbjct: 1088 AKALATIERNVKLQAQLIEDLLDVSRILQGKMVLNVTSVNLVSVIEAALETVRLSAETKA 1147

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            I+++ + + ++   + D  RL QI   +L+N + F+ +G  V ++  R +      V++ 
Sbjct: 1148 IQLETLMEPEIDPILGDPARLQQIVWNLLTNGVKFTPQGGRVTVRLQRVDTFAQLQVQDT 1207

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTT 783
            G  I       VF+ F        R   G+GLGL+IV      HGG V+  S  EG   T
Sbjct: 1208 GKGINAAFLPHVFDYFRQEDGTTTRKFGGLGLGLAIVRHLTEQHGGTVAADSPGEGLGAT 1267

Query: 784  INCRIPSK 791
               R+P +
Sbjct: 1268 FTIRLPLQ 1275



 Score = 96.5 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/418 (12%), Positives = 136/418 (32%), Gaps = 35/418 (8%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
             ++    ++  +    C  + +    F  + D +    +  +  G   +AN S ++   
Sbjct: 3   FDAVSLNRADPPQENHWCSTMPSLEEEFSTILDHIAEAFFALNLNGSCTYANQSAERLLG 62

Query: 228 TEGIVFQK-------AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV 280
            +   +          +  S +L+++  +          + F  +++         + + 
Sbjct: 63  AKRADWLHQPLWQIFDVDSSSQLYQQCDRVLTELICVEFEEFYPSLN-------HWFAVR 115

Query: 281 RVLNSFGEAGIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQNRYLQFHNRSFV 336
            + +  G      D+++   +   L    +    +L  +   I   D +  L+  N++  
Sbjct: 116 LIPSPKGCFAYFQDINQLKQIEAALGKEQDFLNILLDQVQAGIVACDADGQLKLFNKAAR 175

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSAN--KLPEQLN-WKTWKEN---IFSVYKSSETHKD 390
               +    L      ++   +L        PE +  ++  +        +    +  + 
Sbjct: 176 SFHGLVAQPLPPQQWAEQYDLYLPDGKSPMAPEDIPLYRALQGEQVVEVEMMIRPKPGQA 235

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
              L +GQ ++ +  S  + G + +  ++T +   E                + +G+ + 
Sbjct: 236 RHLLASGQAIYNL--SGKKQGAVVVMHDITERKHTEAALRESEARLSSIFQTIPDGIIIL 293

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLS---PGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            P G+I  +N A   + +   + L           I     + + E +       I T  
Sbjct: 294 NPQGQIITANAAAEKILRLTSSDLRARGYNDPAWAITTVDGQPFPEEELP-FVQVIRTGK 352

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNE 560
             ER          +  +L  +  PL +A   +  V     ++T+  RAE AL    E
Sbjct: 353 AVERVEHAIAHPDGTKIILSINASPLLDAHGQIVHVIAAISDITERKRAEVALQASEE 410



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/427 (13%), Positives = 128/427 (29%), Gaps = 42/427 (9%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE-TEGIVFQ 234
            ++ +       L        +L D +   +   D  G +   N + +         +  
Sbjct: 128 QDINQLKQIEAALGKEQDFLNILLDQVQAGIVACDADGQLKLFNKAARSFHGLVAQPLPP 187

Query: 235 KAIGESRKLF--------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL--- 283
           +   E   L+          E      +    +    E +   + G  +           
Sbjct: 188 QQWAEQYDLYLPDGKSPMAPEDIPLYRALQGEQVVEVEMMIRPKPGQARHLLASGQAIYN 247

Query: 284 ---NSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                 G   +  D+++    E  + +       I   +   I I +    +   N +  
Sbjct: 248 LSGKKQGAVVVMHDITERKHTEAALRESEARLSSIFQTIPDGIIILNPQGQIITANAAAE 307

Query: 337 ELWEIDLAFLATNPSNDELLEFL-RSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
           ++  +  + L     ND             PE+         +    K+ E  +     P
Sbjct: 308 KILRLTSSDLRARGYNDPAWAITTVDGQPFPEEELPFV---QVIRTGKAVERVEHAIAHP 364

Query: 396 NGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           +G  + + + ++P           I    ++T +   E       +     I+  +EG+ 
Sbjct: 365 DGTKIILSINASPLLDAHGQIVHVIAAISDITERKRAEVALQASEERYRSVIETAAEGIV 424

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           +   DG I   N +   +      ++   + +      C+ Y + S         + +  
Sbjct: 425 LQTADGNIFTCNASAERILGLTAAQMMGRSSLD--PRWCAIYEDGSPFPGELHPAMVTLR 482

Query: 509 --DERKSLQGTLELLSDSVLEYSIIPLPNAQ--------TMLTFVNVTDSVRAERALTEK 558
             D + ++   +     S+   SI   P  Q         + TF ++T+S +AE  L   
Sbjct: 483 TGDPQTNVTMGIRKPEGSLTWISINTRPLFQPDSATPVAVVSTFFDITESKQAEAELLIS 542

Query: 559 NEALRKA 565
           + AL++ 
Sbjct: 543 DTALQQM 549



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/509 (12%), Positives = 154/509 (30%), Gaps = 80/509 (15%)

Query: 136 KEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVF 195
           K GQ+  L+A  Q    +   G+  G+   +          ++ E       L    +  
Sbjct: 231 KPGQARHLLASGQAIYNL--SGKKQGAVVVM---------HDITERKHTEAALRESEARL 279

Query: 196 KVLFDSLDFLVWHRDQAGDILWANISYK----------KNTETEGIVFQKAIGESRKLFK 245
             +F ++   +   +  G I+ AN + +          +        +     + +   +
Sbjct: 280 SSIFQTIPDGIIILNPQGQIITANAAAEKILRLTSSDLRARGYNDPAWAITTVDGQPFPE 339

Query: 246 EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI--VRVLNSFGEAGIAI----DVSK-- 297
           EE+    +  +       E       G      I    +L++ G+    I    D+++  
Sbjct: 340 EELPFVQVIRTGKAVERVEHAIAHPDGTKIILSINASPLLDAHGQIVHVIAAISDITERK 399

Query: 298 --EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
             E+ +         ++      I +   +  +   N S   +  +  A +    S D  
Sbjct: 400 RAEVALQASEERYRSVIETAAEGIVLQTADGNIFTCNASAERILGLTAAQMMGRSSLDP- 458

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTW---HLPNGQTLHVIVTSNPR--- 409
               R      +   +           ++ +   +       P G    + + + P    
Sbjct: 459 ----RWCAIYEDGSPFPGELHPAMVTLRTGDPQTNVTMGIRKPEGSLTWISINTRPLFQP 514

Query: 410 -----GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFR 464
                   +  F ++T     E +    + +    +  + + + +    G I+       
Sbjct: 515 DSATPVAVVSTFFDITESKQAEAE----LLISDTALQQMPDAILLTDLQGNIQRWLGKAE 570

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE----------RKSL 514
            ++               I    +  ++      + A II +              RK  
Sbjct: 571 QIFGYTAP--------EAIGRPVNFLHHPDIKARMTADIIQALQTTGEFWGEIPCIRKDG 622

Query: 515 QGTL-ELLSDSVLEYSIIP--LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI--- 568
            G L E  + +V + +  P  L      +T     ++ RAE    +  E   + +     
Sbjct: 623 SGVLIETTAKTVHDKAGQPIFLIGINKDITERKQAEAERAELIRQQVQEQTARLEAEADL 682

Query: 569 -KNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            ++SF+  VS    + L++ + + + L++
Sbjct: 683 RRSSFLVEVS----TTLSSSLDYAETLQS 707



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 98/334 (29%), Gaps = 46/334 (13%)

Query: 129 KATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKL 188
           +  E          ++        +   G++           +    S++ E       L
Sbjct: 355 ERVEHAIAHPDGTKIILSINASPLLDAHGQIV---------HVIAAISDITERKRAEVAL 405

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK---------AIGE 239
                 ++ + ++    +  +   G+I   N S ++                    AI E
Sbjct: 406 QASEERYRSVIETAAEGIVLQTADGNIFTCNASAERILGLTAAQMMGRSSLDPRWCAIYE 465

Query: 240 SRKLFKEEIKKRMISSSALE---------KNFCETVSTLEHGNNKSYKIVRVLNSFGEAG 290
               F  E+   M++    +         +    +++ +       ++            
Sbjct: 466 DGSPFPGELHPAMVTLRTGDPQTNVTMGIRKPEGSLTWISINTRPLFQ-PDSATPVAVVS 524

Query: 291 IAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP 350
              D+++      +L  +   L  +  AI + D    +Q       +++          P
Sbjct: 525 TFFDITESKQAEAELLISDTALQQMPDAILLTDLQGNIQRWLGKAEQIFGYTAPEAIGRP 584

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQTLHVIVTS--- 406
            N     FL         +  +   + I ++  + E   +      +G  + +  T+   
Sbjct: 585 VN-----FLHH-----PDIKARMTADIIQALQTTGEFWGEIPCIRKDGSGVLIETTAKTV 634

Query: 407 NPRGG----TIWMFENLTVQVDLETKYNTLVKVQ 436
           + + G     I + +++T +   E +   L++ Q
Sbjct: 635 HDKAGQPIFLIGINKDITERKQAEAERAELIRQQ 668


>gi|39998228|ref|NP_954179.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39985174|gb|AAR36529.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298507165|gb|ADI85888.1| response receiver histidine kinase [Geobacter sulfurreducens KN400]
          Length = 484

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 114/256 (44%), Gaps = 6/256 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q +   +  TD       +       ++ + +K+  +  VS+E+ +PLT ++GFT+ L  
Sbjct: 231 QCIDKAIRWTDGRMVRMEIAIDITERKEMERMKDEMISAVSHEMHTPLTAMMGFTEFLLE 290

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +++      Q  Y++ I   +  L  L+ + L L  + A ++K   + + +  L+ +V  
Sbjct: 291 NEVD--RDLQKNYLKTIYRETERLNELITNFLQLQRLKASMVKFRITPVAVGLLVADVVS 348

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             A        RI V     L     + ++L Q  S ++SNA+ +S  G  V + A+   
Sbjct: 349 LYA--AASKKHRIVVECPPDLPPVRGNEEQLYQAISNLVSNAIKYSPDGGDVTIGASAAA 406

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 V++ G  I  +  + +F RF    +  +R   G GLGL++V   +  HGG   +
Sbjct: 407 DIVTLWVRDQGIGISPEFQEKIFERFFRVDNSDRRKVGGAGLGLTLVREIVATHGGRSWV 466

Query: 775 SSSDEGVTTINCRIPS 790
            SS    +T    +P+
Sbjct: 467 ESSPGKGSTFFISLPA 482


>gi|162453847|ref|YP_001616214.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161164429|emb|CAN95734.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 955

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 126/308 (40%), Gaps = 30/308 (9%)

Query: 509 DERKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---ALTEKNEALRK 564
           ++R    GT E +     L      L      L   N     R E+    L E   A   
Sbjct: 406 EQRFEASGTREFVHIGDALNGMAQQLRETFAALAKTNEELEQRVEQRTAELKEATVAADA 465

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A+  K+ F+ ++S+ELR+PL  I+G+  +LK S+  SL  +  + VE I+ S + LL L+
Sbjct: 466 ANRAKSDFLANMSHELRTPLNGILGYAQILKRSR--SLGEQDLRGVEVIAESGSHLLTLI 523

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVAD 683
           ND+LDLA +++  M+++ +       LN   +    +  +  I         L     AD
Sbjct: 524 NDVLDLAKIESRTMEIHPNDFHFPSFLNATAEICRIRAEQKGIAFVFKPGPALPEGVRAD 583

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----------------------DFIF 721
           ++RL QI   +L NA+ F+  GS     A    G                         F
Sbjct: 584 QRRLRQILLNLLGNAIKFTENGSVTFTVAEVPGGSRGARKDLPEDGASPESRTKTHRIRF 643

Query: 722 SVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            +++ G+ I  +    +F  F         R G GLGL+I +  + L GG + + S    
Sbjct: 644 EIEDTGTGIGAEHLDQIFLPFKQVGDKSRHREGTGLGLAISQRIVTLMGGSIQVRSELGK 703

Query: 781 VTTINCRI 788
            +     +
Sbjct: 704 GSVFWMDL 711


>gi|188996682|ref|YP_001930933.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931749|gb|ACD66379.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 337

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 136/360 (37%), Gaps = 40/360 (11%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           ++    +D+L EGV V   +  I   N   +    T +     G H + +      Y   
Sbjct: 14  EILISFLDYLKEGVIVVDENKNILFVNRFAQRFLNTPDYE---GKHFKEVINDNYLYSII 70

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAE 552
           S  +D    +  + D   K L     +    ++    I P                    
Sbjct: 71  SHEYDKDTKLEVNIDSS-KYLVNVYHIKGKKIIHLQDITPFEI----------------- 112

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
                         + K  FV +VS+EL++P++ +    + ++       +S   ++V+ 
Sbjct: 113 ------------YKQAKKDFVSNVSHELKTPISVLKSAMETIEEEIK---DSNILKFVDM 157

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
                  + +L+ND+L LA +++    +N    +L   + ++ + +     + NI++K  
Sbjct: 158 AKKRINQMDSLINDLLILARLESQEDLVNKKKYLLYKQVEDIFEDLQHLTKDKNIKLKNN 217

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                    AD Q+L      ++ NA+ ++ +  TV + A  D    I SV + G  IP 
Sbjct: 218 VPKDF-EVYADEQKLSIALKNLIENAIKYNVQNGTVEVNAKTDGKYDIISVIDTGIGIPP 276

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    VF RF        R   G GLGLSIV+     H G V + S     +    +IP 
Sbjct: 277 ESIPLVFERFYRVDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESQVGKGSKFYIKIPK 336


>gi|166710228|ref|ZP_02241435.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzicola
            BLS256]
          Length = 1171

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 186/471 (39%), Gaps = 32/471 (6%)

Query: 336  VELWEIDLAFLATNPSNDELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             +L  +    +    ++   ++   L      P  +  + W +    +  +S        
Sbjct: 568  ADLQALAERVVGERHAHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAA---- 623

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                 +  +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD
Sbjct: 624  -----SARLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPD 678

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R+   N  ++ L+   +  L  G  + ++    +      +G D+   I       R  
Sbjct: 679  MRLTAWNRRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAG 737

Query: 514  LQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
                 E       V+E     LP    + ++ ++TD  RAERAL + NE L +       
Sbjct: 738  SPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSR 797

Query: 566  -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                  + K  F+  +S+++  PL     F   L+ S     N +Q    E + AS    
Sbjct: 798  EAELAQQSKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAA 855

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              L++ +LD++ +DAG ++        + L++E+    A       +R++V S  +    
Sbjct: 856  EELLDGLLDVSRLDAGGLRPTVEGFDASALMHELAAQYAPMAASRGLRLQVHS--RPIWV 913

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +DR+ L ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F 
Sbjct: 914  RSDRRLLRRVMQNFLANALRYTRQG-RIVLGMRGRGQQVELQVWDTGPGIPEHHMRQIFE 972

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F           +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 973  EFRRYQQPFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1023



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 583 AHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 642

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 643 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 702

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 703 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 761

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 762 GGYVTSYNDITDYKRAERALLDANENLEQ 790


>gi|165925853|ref|ZP_02221685.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|229896495|ref|ZP_04511663.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Pestoides A]
 gi|165922465|gb|EDR39642.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|229700569|gb|EEO88600.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Pestoides A]
          Length = 924

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|144901271|emb|CAM78135.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 727

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 82/496 (16%), Positives = 182/496 (36%), Gaps = 25/496 (5%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +E  +         I      AI + D    +   N SF+ L + D A   +        
Sbjct: 244 RETALKASEQRLSSIFATSEAAIVLSDAQGQVMQANDSFLRLIDHDKALDLSLDHLTHGD 303

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +  R A  L   LN +T +  +    +  +     W   + + +        +  T+ + 
Sbjct: 304 DAAREAPLLRAMLNGETDRYRLDKRLRRHDGSC-VWVDASVRAIRDGDAPPHQFVTVAI- 361

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP--DGRIKLSNPAFRSLWKTEENRL 474
            +++ ++  E + + +       +D  ++ +    P   GR+  +N A    + T +  L
Sbjct: 362 -DISERMRAEQELHFI----RALVDQSADPIYCLDPLDGGRMVWANAATCRHFGTSQKHL 416

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                I +          E+   +        F+   +   G +       +E S   L 
Sbjct: 417 LT-MRIPDWDPNIDAPAVEAMWQNPEPLSTRVFETTHRVAGGDI-----IPVEVSATWLE 470

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D     R L        +++E    F    S++L+ PL  +  F  LL
Sbjct: 471 HDGKPYVAGYIRDIRDRNRMLMAVR----RSNEDLQQFAYVASHDLQEPLRMVASFLQLL 526

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +      L++   +Y+++    +  +  L+ D+L  + +D+    L    + L  +    
Sbjct: 527 ERRYADRLDTAGREYIQFAVDGAVRMKQLIEDLLAYSRIDSRG--LQPQPVDLAVIAQAA 584

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKA 712
             ++ + + EN  R+ +    +L   + D+ +L+++   ++ NA+ + +      + + A
Sbjct: 585 CDNLVSAIAENGGRVSL--SDRLPMVMGDQPQLIRLLQNLIGNALKYRAPDRFPDITVSA 642

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            R    +I +V +NG  I       +F  F          G G+GL+I +  +  HGG +
Sbjct: 643 QRHGDTWIIAVSDNGIGIAPQYHDRIFMIFQRLHGIAAYEGTGIGLAICKRIVERHGGEI 702

Query: 773 SISSSDEGVTTINCRI 788
            + S +   +T    +
Sbjct: 703 WVESQENTGSTFKFTL 718


>gi|89901133|ref|YP_523604.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89345870|gb|ABD70073.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 602

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 85/388 (21%), Positives = 166/388 (42%), Gaps = 25/388 (6%)

Query: 422 QVDLETKYNTLVKVQGET----------IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           Q++LE + + L +VQ E            D    G       G I  +N    +L     
Sbjct: 65  QIELEMQNDELRRVQQELETSRARYFDLYDLAPVGYITVSDAGMILEANLTAATLLGVPR 124

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
           + L      R I  +    Y +     +      + + +    +G+   +S   L  ++ 
Sbjct: 125 SALVKRPISRFIVKSQQDIYYQYRKQLVETGQAQTCELQVLHSEGSALWVS---LAATVA 181

Query: 532 PLPNAQTM--LTFVNVTDSVRAERALTEKNEAL-------RKADEIKNSFVQHVSYELRS 582
              +  T+  +   ++++    +++L E N  L        KA+  K+ F+  +S+ELRS
Sbjct: 182 QETDGATILRIVLNDISERKLLDQSLRETNVKLESALFLADKANLAKSEFLSGMSHELRS 241

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  ++GF  L++T        +Q+  +E I      LL L+N+ILDL+ V++G + L+ 
Sbjct: 242 PLNAVLGFAQLIETGTPAPTPGQQAS-LEQILRGGWYLLTLINEILDLSLVESGKLSLSM 300

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             ++L++  ++ +  I  +  +  IR+   S        ADR RL Q+   +LSNA+ ++
Sbjct: 301 EPVLLSEKFSDCRAMIDPQAQKAGIRVSFASFDSPCFVEADRTRLKQVIVNLLSNAIKYN 360

Query: 703 SKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSI 760
             G +V +  +    G    SV + G  + ++    +F  F       G + G G+GL +
Sbjct: 361 RAGGSVEVTCSTPAAGRIRISVIDTGPGLSDNKLAQLFQPFNRLGQEAGTQEGTGIGLVV 420

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  + + GG + + S     +     +
Sbjct: 421 CKRLVEMMGGEIGVHSRVGIGSEFWFEL 448


>gi|299145321|ref|ZP_07038389.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298515812|gb|EFI39693.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 674

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 123/245 (50%), Gaps = 5/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q
Sbjct: 429 ELLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAMG--GSTEDEQ 486

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++      +
Sbjct: 487 QSYYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSLD 546

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKN 725
            +    +  +    V D QR+ Q+   +LSNA  F+ +G   +      +    IFSV +
Sbjct: 547 NQFLFSTSFETFRMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVTD 606

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G  IP++    VF RF       Q  G GLGLSI +  ++   G + I     G     
Sbjct: 607 TGCGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWRGSIWIDPDYTGGARFV 664

Query: 786 CRIPS 790
              P 
Sbjct: 665 FSHPL 669


>gi|300022943|ref|YP_003755554.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524764|gb|ADJ23233.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 881

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 117/254 (46%), Gaps = 3/254 (1%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
               +    +  + +  L  ++E L   D +K+ F  +VS+ELR+PLT I+   + LK S
Sbjct: 176 VHFNYRRRFNEFQLKYKLAAQHEELSALDRLKSQFFANVSHELRTPLTLILAPVEKLK-S 234

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            + SL +  ++ +E I  ++  LL LVNDIL L  ++ G   L    I +   L+    S
Sbjct: 235 DVASLGAPAAELLEVIENNALRLLRLVNDILGLIRLEEGRASLVKKQIDMAHFLSHTTAS 294

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +        I + +          AD   L +I   +++NA+ F+     + + AA +  
Sbjct: 295 MKHLAAMKGIELTLSEPQGDLRIDADPDALEKIIGNVIANAIKFTPPEGRIDVAAAHEGD 354

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
                + + G  IP +    +F+RF        RR  G+GLGL++V   I  HGG V++S
Sbjct: 355 MVTVRIADTGIGIPPEQLPHIFDRFYQVDGSATRRHQGLGLGLALVRELITRHGGDVAVS 414

Query: 776 SSDEGVTTINCRIP 789
           S     TT   R P
Sbjct: 415 SDSGRGTTFVLRFP 428



 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 111/331 (33%), Gaps = 39/331 (11%)

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
              C      ++   +   ++T+  DE    +  +  L +   ++ I P    +      
Sbjct: 551 LEVCRSLKERTETRAIKIIVLTARADE----EAKIVALKNGADDFLIKPFSGIEVRSRIA 606

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNS----------------FVQHVSYELRSPLTNI 587
           N   + + ER L   N  L+ + +                        + +E+ +PL  +
Sbjct: 607 NFIRAAQLERDLQRTNVELKDSLQQLRETEAALVQNARLSALGTMAAGLLHEIGNPLNFM 666

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
                L         +   +  ++ I A    +  +V D+       A     +     +
Sbjct: 667 GTALQLAARDPTIQGDPDTADTMKDIQAGYDRIHRVVTDLRGFT---APQKPEHPRPFPI 723

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM-------- 699
              ++   +  A    +  I I        G     +  + Q+   +++NA+        
Sbjct: 724 ESAIDHALRFTAHV--QKGINITRDISEN-GIVFGSQSTITQVLVNLIANAIAAVRTVEE 780

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
               +   + + +     +   SV++NG+ I   +   +F+ F S    G   G+GLGL+
Sbjct: 781 KRQPE---ISISSWIQGNELFVSVRDNGTGIDPKIQSQIFDPFFSTKDVG--EGMGLGLA 835

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    I  HGG +S+ SS    T     +P 
Sbjct: 836 VSHRIIANHGGSLSVKSSLGDWTEFRFNLPL 866


>gi|237726273|ref|ZP_04556754.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D4]
 gi|229434799|gb|EEO44876.1| two-component system response regulator sensor kinase [Bacteroides
           dorei 5_1_36/D4]
          Length = 748

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 167/389 (42%), Gaps = 24/389 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWK 468
           G  ++    T++   + +    ++ + E +    EG     +  DG+  + + AF  L  
Sbjct: 372 GIAYLIYIYTLEKGRKKEALRNLRFEHEALTLALEGGKTYAWCFDGKTAVFDQAFCELTN 431

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VL 526
             +N L     I+ IA     Y +  D       +       R++ Q   +         
Sbjct: 432 RSQNLL----EIKEIAN----YVHPGDQAQFRKNVSNILHRPRRTAQYRCKFDDTGYQWW 483

Query: 527 EYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           E+    L + +          N+ +    E  L    + L +  E+K SF+ ++S+E+R+
Sbjct: 484 EFRYSVLQHYEQNPIITGLLVNIQEIKDKEEELIRARK-LAEQAELKQSFLANMSHEIRT 542

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF++LL T K  S   ++ ++   I  ++ +LL LVND+L+L+ +++G M  + 
Sbjct: 543 PLNAIVGFSNLLTTEKNIS-EEEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHC 601

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                +     V Q+    +    +        +  +   DR RL Q+ +  L NA  F+
Sbjct: 602 EDCSAHHFAETVYQTHQVIILP-PVEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFT 660

Query: 703 SKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           S+G  + L     ++  +  F V++ G+ IP++  + +F RF       Q  GVGLGL+I
Sbjct: 661 SQGH-IKLGYFCDKEKKEIHFFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAI 717

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  +    GH+ + S     +     +P
Sbjct: 718 SKVIVEKMNGHIDVQSEVNKGSRFTAVLP 746


>gi|119485203|ref|ZP_01619588.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
 gi|119457431|gb|EAW38556.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
          Length = 364

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 111/257 (43%), Gaps = 7/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N    +    + +  +   +     E++   ++ +   +  +++ELR+PLT + G+ + +
Sbjct: 111 NLDERMIKSEIPELNQLSLSFNRMAESIEGIEQRRRELISDMTHELRTPLTVVRGYLEEM 170

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              ++   +   ++ +      +  L  LVND+ +L+  +AG + +N   + L  LL  +
Sbjct: 171 AEGQIQPSDELYNRLI----RETRRLERLVNDLQELSKAEAGYLVINPKPLNLRPLLESL 226

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                 ++ E    I++     L +  AD  R  QI   +L NA+ ++  GS + +K  +
Sbjct: 227 VTRFGDQLLEYGPVIRLDCPSSLPTVFADIDRTEQILVNLLGNAIRYTENGS-ITVKVWQ 285

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
           +      +V + G  I E     VF RF        R   G G+GL+I +  + L GG +
Sbjct: 286 NLNSVWVAVIDTGIGISEIDLPHVFERFWRGERSRSRQWGGTGIGLAITKRLVELQGGKI 345

Query: 773 SISSSDEGVTTINCRIP 789
            + S     +     +P
Sbjct: 346 EVESELGKGSIFRFCLP 362


>gi|254242634|ref|ZP_04935956.1| hypothetical protein PA2G_03393 [Pseudomonas aeruginosa 2192]
 gi|126196012|gb|EAZ60075.1| hypothetical protein PA2G_03393 [Pseudomonas aeruginosa 2192]
          Length = 1212

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 161/394 (40%), Gaps = 25/394 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G   +    + V+  +E   +  ++      D +   + V   +GR+   N ++      
Sbjct: 550 GWVTYQRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGL 609

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVL 526
               +      R +       +   +    F         E ++++    +     +  +
Sbjct: 610 SSEEVMN----RTVLELPMENF---ETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWI 662

Query: 527 EYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           ++ I P  ++       +  ++++T+  +    L E      +A   K +F+  +S+E+R
Sbjct: 663 DHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIR 722

Query: 582 SPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +P+  +IG  +L LK ++ G ++      +E   AS+  LL L+ DILD+A +++G + L
Sbjct: 723 TPMNAVIGILELALKRAETGRVD---RSSIEIAYASAKSLLELIGDILDIARIESGRLSL 779

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAM 699
           +     L +L+  V +       +  + + +  D  + G  + D  R  QI S ++SNA+
Sbjct: 780 SPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAI 839

Query: 700 DFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGV 754
            F+ +GS  + +   +     +     V++ G  I     + +F  F           G 
Sbjct: 840 KFTDEGSIRIRIDGRQVEPSLLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQNTEGT 899

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL I  S   + GG + +SS     T I+  +
Sbjct: 900 GLGLVISRSLCEMMGGRLVMSSELGQGTRIDVEL 933



 Score = 41.9 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG--- 230
              ++       + LS+ +   + L D +   ++ RD  G +L  N SY ++        
Sbjct: 555 QRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEV 614

Query: 231 -----IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                +       E+   F       M     +E  +   +   E   +   +  R  + 
Sbjct: 615 MNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSG 674

Query: 286 F--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              G     +D+++   + D+L     +    + A   F
Sbjct: 675 TIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTF 713


>gi|324324689|gb|ADY19949.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 463

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKETTS 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 267 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSHIRISVIEENKRIT 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 ITIEDEGEGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|302669543|ref|YP_003829503.1| two component system histidine kinase/response regulator hybrid
            protein [Butyrivibrio proteoclasticus B316]
 gi|302394016|gb|ADL32921.1| two component system histidine kinase/response regulator hybrid
            protein [Butyrivibrio proteoclasticus B316]
          Length = 1419

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 79/363 (21%), Positives = 152/363 (41%), Gaps = 25/363 (6%)

Query: 451  GPDGRI---------KLSNPAFRSLWKTEENRL--SPGTHIRNIAATCSRYYNESDGWDL 499
            G DGRI          ++NP  R   + +EN     P + +  +  T   Y N      +
Sbjct: 693  GSDGRISITASVMDYTMTNPLVRVFIEGKENVGLEVPRSELSTLEYTSLGYGNYILHVQV 752

Query: 500  FAAIITSFDDERKSL---QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                   + +ER  L      +EL +  +L   ++       +   +  T   +    +T
Sbjct: 753  LNERNEVYQEERFLLVKKPRLVELFAVKLLILVVVAFAAGFLVWRILKATVVTKQYEEIT 812

Query: 557  EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ----SQYVEY 612
            +  E   +A+  K+ F+ ++S+E+R+P+  I+G  +++       +          Y   
Sbjct: 813  KAKEEAERANTAKSRFLANMSHEIRTPINTILGMDEMILREDARDVPKAYFLSIMNYSLD 872

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            I  ++  LL L+ND+LD++ +++G M L      + D L  +   I ++  E  +  +V+
Sbjct: 873  IKNATESLLGLINDLLDMSKIESGKMHLVEQEYDVQDQLRSIVSMIRSRSTEKELIFEVV 932

Query: 673  SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN-GDFIFSVKNNG 727
             D  L +    D  ++ Q+   +L+NA+ +++ G+    V ++A  D+  D  FSVK+ G
Sbjct: 933  IDEILPTRMYGDNGKIKQVVLNLLTNAVKYTAAGAVEFSVSMEARNDDICDLRFSVKDTG 992

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
              + E+    +F  +            G GLGL I   F  L GG +   S     +   
Sbjct: 993  IGVKEEDMDKLFTAYERLDEEKNSGIQGTGLGLDISRRFAELMGGKLWCESVYGEGSEFI 1052

Query: 786  CRI 788
              +
Sbjct: 1053 LTL 1055


>gi|293394244|ref|ZP_06638544.1| sensor histidine kinase [Serratia odorifera DSM 4582]
 gi|291423222|gb|EFE96451.1| sensor histidine kinase [Serratia odorifera DSM 4582]
          Length = 779

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 150/374 (40%), Gaps = 17/374 (4%)

Query: 421 VQVDLET-KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            Q +L   +      +    +D   + V     D      N A   L    E +L   T 
Sbjct: 141 EQRELAQIELGQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLTGKSEKQLIGLTP 200

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                   +    E+D       +  +++       G       +  E   +P  +    
Sbjct: 201 YDVYEQDIADKVIETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGK 255

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++ 
Sbjct: 256 RHGLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE- 312

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+ +Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   +     L +++    
Sbjct: 313 --LDDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFLADLENLSG 370

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                  ++  +     L    + D  RL QI   ++ NA+ F+ +G  ++++  RD  +
Sbjct: 371 LLAQPKGLQFVLDPQQPLPQQVITDGTRLRQILWNLIGNAVKFTQQG-QIVVRVRRDGQE 429

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR--GVGLGLSIVESFINLHGGHVSI 774
             +F V+++G  IP+D    +F  +      RG R   G G+GL++ +      GG +++
Sbjct: 430 KLVFEVEDSGMGIPQDEQDKIFAMYYQVKDQRGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 775 SSSDEGVTTINCRI 788
           +S     +     I
Sbjct: 490 NSRPGHGSCFTLTI 503



 Score = 44.5 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 82/206 (39%), Gaps = 27/206 (13%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI-----KIEGRVSGSCAFLRILSLDGIY 175
                +L++  +KL +E +  DL    Q    I     +I  R+    A  R+  +D + 
Sbjct: 81  EESRQRLARLVDKL-EEMRHRDLQLNQQLKDNITQLNQEIADRIKAEEA--RLQVMDKLK 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            E+ +  L   +L    ++ +   D+   LV++R++  +    N + +  T   G   ++
Sbjct: 138 EEMEQRELAQIELGQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLT---GKSEKQ 194

Query: 236 AIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------VR 281
            IG     +++++I  ++I +   EK F   VS           G    +++       R
Sbjct: 195 LIGLTPYDVYEQDIADKVIETD--EKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDR 252

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTH 307
           V    G  G   D+++     D L +
Sbjct: 253 VGKRHGLMGFGRDITERKRYQDALEN 278


>gi|257086990|ref|ZP_05581351.1| hypothetical protein EFLG_00581 [Enterococcus faecalis D6]
 gi|256995020|gb|EEU82322.1| hypothetical protein EFLG_00581 [Enterococcus faecalis D6]
 gi|315027860|gb|EFT39792.1| PAS domain S-box [Enterococcus faecalis TX2137]
          Length = 591

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 152/382 (39%), Gaps = 31/382 (8%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSI 530
              G   +N+ +       ++D   L   ++    S   E    QG   L  D  L Y  
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRY-- 338

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   +A          D  R  +            ++++  FV +VS+EL++P+T+++GF
Sbjct: 339 LDDQSANDYQVLGIAYDLTRVRQL-----------EKMQKDFVSNVSHELKTPVTSLLGF 387

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+ L            +Q++  +   +  L  L+ +IL+L+   +  +      I L   
Sbjct: 388 TETLIDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKF 445

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +
Sbjct: 446 ITEILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITI 504

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
             A +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L 
Sbjct: 505 SYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELL 564

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG ++I S     TT    +P 
Sbjct: 565 GGKIAIDSHLGLGTTFTITLPL 586


>gi|239947837|ref|ZP_04699590.1| histidine kinase sensor protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922113|gb|EER22137.1| histidine kinase sensor protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 497

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   L K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 238 TNYARQIIEEQLETNRNLKAQIVKLEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L++     
Sbjct: 298 RDA---EKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLIL 354

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +  +  +  + +      +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 355 VKPRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDEL 414

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 415 AKLVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 474

Query: 774 ISSSDEGVTTINCRI 788
           + S     TTI    
Sbjct: 475 LQSKINEGTTITITF 489


>gi|148654377|ref|YP_001274582.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566487|gb|ABQ88632.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 556

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 133/366 (36%), Gaps = 21/366 (5%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +     I++ ++GV +     RI   N A   L        + G     + A  +  
Sbjct: 163 REKQHLDALIENSADGVMILDSRWRITTFNRAMEQLTGWSREE-AIGRPCAEVLAIHTPQ 221

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL----EYSIIPLPNAQTMLTFVNVT 546
                  D    +     +     +G +       L     Y+    P    +    NV 
Sbjct: 222 GANLCLTD--CPLQRQPFEPNPVAEGWITTRDGRRLYIQSRYAAQRTPQGAFLGAIANVR 279

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D    +              E++N+F+  +S+ELR+P++ I G+ + L         +  
Sbjct: 280 DVTEQKIE-----------AEMQNTFISVISHELRTPVSIIKGYAETLARQDAAWDAATL 328

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  I   +  L   +N +L+ + +    M+L  S   +  L+  V +    +  E  
Sbjct: 329 REGLMVIIEEADRLAQQINTLLEASRLQTDGMRLELSDWPVRPLVERVVERFMPQAGER- 387

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              ++     L    AD +R   +   ++SNA+ +S  G  V + A       I SV + 
Sbjct: 388 FTFEIDIPDDLPPVHADYERTRTVLENLVSNAIKYSPNGGLVRIAARVSGDYAIISVSDQ 447

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +  K +F RF    +  R + +G GLGL +    +   GG + + S     +  
Sbjct: 448 GIGIPFEEQKKLFRRFYRVDNRLRRETQGAGLGLFLSRVIVEAQGGRIWVDSRPGRGSRF 507

Query: 785 NCRIPS 790
           +  +P 
Sbjct: 508 SFTVPL 513



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 91/316 (28%), Gaps = 43/316 (13%)

Query: 125 IKLSKATEKLR-KEGQSFDLVAETQNDCAIKIEGRV-SGSCAFLRILSLDGIYSELAETT 182
            +L +    LR     +  L   +  +  I++   + +G+   + +   DG+    A + 
Sbjct: 7   QRLRQLESLLRISRAITAHLDLTSVLNLVIEVAVDLLAGNSGLIALRDDDGVTRIYAASG 66

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRK 242
           L  +       +     D    LV    + G                             
Sbjct: 67  LARETWPAFTDLLATPIDDQPTLVRRLREVG-----------------------ADIGLP 103

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEIT-V 301
           L        +   + +   +    +       + ++++       +A IA+  ++    V
Sbjct: 104 LRHVSALPLVFRGATVGVIYVFRAALNVEFTAEEHQLLTAFAD--QAAIAVSNARLFQSV 161

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             +  H   ++ N    + I D    +   NR+  +L           P  + L      
Sbjct: 162 LREKQHLDALIENSADGVMILDSRWRITTFNRAMEQLTGWSREEAIGRPCAEVL------ 215

Query: 362 ANKLPEQLNWKTWKENIFSVYKSSETHKDTW-HLPNGQTL----HVIVTSNPRG---GTI 413
           A   P+  N       +           + W    +G+ L           P+G   G I
Sbjct: 216 AIHTPQGANLCLTDCPLQRQPFEPNPVAEGWITTRDGRRLYIQSRYAAQRTPQGAFLGAI 275

Query: 414 WMFENLTVQ-VDLETK 428
               ++T Q ++ E +
Sbjct: 276 ANVRDVTEQKIEAEMQ 291


>gi|45440163|ref|NP_991702.1| hybrid sensory histidine kinase BarA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|162421785|ref|YP_001605547.1| hybrid sensory histidine kinase BarA [Yersinia pestis Angola]
 gi|45435019|gb|AAS60579.1| two-component regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162354600|gb|ABX88548.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           Angola]
          Length = 921

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|15901088|ref|NP_345692.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           TIGR4]
 gi|111657844|ref|ZP_01408559.1| hypothetical protein SpneT_02000967 [Streptococcus pneumoniae
           TIGR4]
 gi|5830524|emb|CAB54569.1| histidine kinase [Streptococcus pneumoniae]
 gi|14972707|gb|AAK75332.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           TIGR4]
          Length = 449

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 146/380 (38%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +      +  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +  +        + ++L   I  S +    S     E L+  V  +++I   
Sbjct: 135 --------LNRSILELLKIEENYELRDLITQSPELLLDSQDINGEYLNLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALCETVAP--DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI-ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                  K  E   + +++ D  + S     D  ++ Q+   IL+NA+ +S  G  + ++
Sbjct: 293 LNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVR 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                   I S+ ++G  IP+     +F+RF        R   G GLGLSI +  I  H 
Sbjct: 353 MKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|89072514|ref|ZP_01159086.1| putative sensor histidine kinase FexB [Photobacterium sp. SKA34]
 gi|89051618|gb|EAR57071.1| putative sensor histidine kinase FexB [Photobacterium sp. SKA34]
          Length = 789

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 149/379 (39%), Gaps = 17/379 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  + + +        +    +D   + +       +    N A   L    E  L  
Sbjct: 138 NEVYQRENAQLAVAEQSALLKSFLDASPDLIYYRNEKNQFSGCNRAMSELLGKTEKELVG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         ++   ++D         ++  DE+  +    +    ++ E   +P  N 
Sbjct: 198 LTPWDVYPEEVAKKIIKTDEEVFNEN--SAMTDEQWLVYPNGKR---ALFELRKVPFYNR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 +        ER   +  +AL KA   K SF+  +S+ELR+PL  I+G + +L  
Sbjct: 253 NGRRLGLMGFGRDITER--KKYEDALEKASSDKTSFISTISHELRTPLNGIVGLSRMLLD 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L  +Q  Y+  +  S+  L N+ NDI+DL   D   ++L    +  N+ ++E+  
Sbjct: 311 T---DLTDEQRGYLRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFNEFIDEMGN 367

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KA 712
                  +  +R  +    +L  +   D  RL Q+   ++ NA  F+ +G  ++    + 
Sbjct: 368 ISQLMAEQKGLRFDLECLTELPKNIEVDSTRLRQVLWNLIGNATKFTKQGGVILSVSSEI 427

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHG 769
              + D IF V+++G  IP+    ++F  +             G G+GL++    + L G
Sbjct: 428 HEHDADIIFEVEDSGVGIPKSEIDNIFAMYYQVKQGDDNIHAVGTGIGLAVSRQLVQLMG 487

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +++ S     +T   +I
Sbjct: 488 GDIAVHSEVGEGSTFTVKI 506



 Score = 39.9 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            + +E+ +       ++   ++ K   D+   L+++R++       N +    +E  G  
Sbjct: 135 DLENEVYQRENAQLAVAEQSALLKSFLDASPDLIYYRNEKNQFSGCNRA---MSELLGKT 191

Query: 233 FQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL--- 283
            ++ +G +   ++ EE+ K++I +     N    ++        +G    +++ +V    
Sbjct: 192 EKELVGLTPWDVYPEEVAKKIIKTDEEVFNENSAMTDEQWLVYPNGKRALFELRKVPFYN 251

Query: 284 ---NSFGEAGIAIDVSKEITVNDQLTH 307
                 G  G   D+++     D L  
Sbjct: 252 RNGRRLGLMGFGRDITERKKYEDALEK 278


>gi|288940436|ref|YP_003442676.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895808|gb|ADC61644.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 729

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 148/399 (37%), Gaps = 44/399 (11%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +VD E             +  + + V +  P G     N  F   +   +  +   T   
Sbjct: 189 RVDGERALAHERAFLATLVRTIPDLVWLKDPKGVYLACNQRFERFFGVTQTEIIGRTDRD 248

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV---LEYSIIPLPNA-- 536
            +    + ++ + D   + A    + ++       T+    D     LE    P+ +   
Sbjct: 249 FLPEHEADFFRQYDLKAIEAGGPCTNEE-------TITFADDGHQERLETIKTPMYDDSG 301

Query: 537 ---QTMLTFVNVTDSVRAERALTEKNEALRKADEI------------------KNSFVQH 575
                +    ++T   +AE  L  + + L    E                   K+ F+ +
Sbjct: 302 RLVGVLGIARDITALRQAETELQRRRDHLEALVEARTAELAAARDAAEAANRAKSEFLAN 361

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I G   L++ + L      Q+  ++ + A+ST LLNL+N IL+ + ++A
Sbjct: 362 MSHEIRTPLNAISGMAHLIRQAGLA---PDQTARLDKLEAASTHLLNLINAILEFSKIEA 418

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G + L  + + +  L+  V   +  +     +             + D   L Q      
Sbjct: 419 GKLTLESAPLQVERLVERVVAMLHERAAAKGLEFVSEVGVLPPYLLGDATCLQQALINYA 478

Query: 696 SNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
           +NA+ F+ +G  + L+ A    D       F V++ G+ I  ++   +F  F    +   
Sbjct: 479 ANAIKFTRQG-RITLRVALVEEDAGSVLLRFEVEDTGTGIEPEVLPRLFTAFEQGDNSIT 537

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            Q  G GLGL+I +    L GG     S+    +     
Sbjct: 538 RQHGGTGLGLAITQRLARLMGGEAGADSTPGVGSRFWFS 576



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 12/145 (8%)

Query: 185 CKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK-----NTETEGIVFQKAIGE 239
            + L++  +    L  ++  LVW +D  G  L  N  +++      TE  G   +  + E
Sbjct: 193 ERALAHERAFLATLVRTIPDLVWLKDPKGVYLACNQRFERFFGVTQTEIIGRTDRDFLPE 252

Query: 240 SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFGEAGIAI 293
               F  +   + I +     N  ET++  + G+ +  + ++           G  GIA 
Sbjct: 253 HEADFFRQYDLKAIEAGGPCTNE-ETITFADDGHQERLETIKTPMYDDSGRLVGVLGIAR 311

Query: 294 DVSKEITVNDQLTHTYEILHNLTVA 318
           D++       +L    + L  L  A
Sbjct: 312 DITALRQAETELQRRRDHLEALVEA 336


>gi|153826164|ref|ZP_01978831.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-2]
 gi|149740105|gb|EDM54270.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-2]
          Length = 1146

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +      + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 721 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQMQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSEFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842


>gi|15802913|ref|NP_288940.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 EDL933]
 gi|15832503|ref|NP_311276.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. Sakai]
 gi|168748323|ref|ZP_02773345.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757413|ref|ZP_02782420.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763545|ref|ZP_02788552.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4501]
 gi|168770938|ref|ZP_02795945.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4486]
 gi|168772797|ref|ZP_02797804.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780330|ref|ZP_02805337.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787283|ref|ZP_02812290.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC869]
 gi|168800705|ref|ZP_02825712.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC508]
 gi|195938723|ref|ZP_03084105.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. EC4024]
 gi|208806690|ref|ZP_03249027.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813535|ref|ZP_03254864.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820000|ref|ZP_03260320.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4042]
 gi|254794332|ref|YP_003079169.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. TW14359]
 gi|261223180|ref|ZP_05937461.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259270|ref|ZP_05951803.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. FRIK966]
 gi|291283606|ref|YP_003500424.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O55:H7 str. CB9615]
 gi|17366358|sp|P58402|EVGS_ECO57 RecName: Full=Sensor protein evgS; Flags: Precursor
 gi|12516740|gb|AAG57495.1|AE005468_4 putative sensor for regulator EvgA [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362719|dbj|BAB36672.1| putative sensor for regulator EvgA [Escherichia coli O157:H7 str.
           Sakai]
 gi|187771129|gb|EDU34973.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017187|gb|EDU55309.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002202|gb|EDU71188.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355573|gb|EDU73992.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4401]
 gi|189360184|gb|EDU78603.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366312|gb|EDU84728.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372943|gb|EDU91359.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC869]
 gi|189377054|gb|EDU95470.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC508]
 gi|208726491|gb|EDZ76092.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734812|gb|EDZ83499.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740123|gb|EDZ87805.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209764538|gb|ACI80581.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|209764540|gb|ACI80582.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|209764542|gb|ACI80583.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|209764544|gb|ACI80584.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|209764546|gb|ACI80585.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|254593732|gb|ACT73093.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. TW14359]
 gi|290763479|gb|ADD57440.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O55:H7 str. CB9615]
 gi|320641022|gb|EFX10503.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. G5101]
 gi|320646410|gb|EFX15333.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H- str. 493-89]
 gi|320651679|gb|EFX20059.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H- str. H 2687]
 gi|320657260|gb|EFX25065.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320667710|gb|EFX34621.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. LSU-61]
          Length = 1197

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|320662964|gb|EFX30288.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O55:H7 str. USDA 5905]
          Length = 1197

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|225027308|ref|ZP_03716500.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353]
 gi|224955370|gb|EEG36579.1| hypothetical protein EUBHAL_01564 [Eubacterium hallii DSM 3353]
          Length = 943

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 123/252 (48%), Gaps = 12/252 (4%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                 + E  E  +  ++ K +F+ H+S+++R+P+  I+GFT +   +   + + +   
Sbjct: 547 QETAEEMAELAEHAQATNKAKTAFLSHMSHDMRTPMNAIMGFTSIAMKN---NPSDEVKN 603

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +E I  SS  LL+L+ND+LDL  V++G +K N     L  + +         +   +I 
Sbjct: 604 CLEKIDESSEYLLSLINDVLDLTRVESGKVKYNPVPADLKSITDSALDITKGFLTNRDIS 663

Query: 669 IKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIF 721
            K+   + K+ + + D  RL  +   ILSNA+ F+  G T+  +A           +  +
Sbjct: 664 FKIQREEAKIPNVLVDPVRLRDVLVNILSNAVKFTPDGGTITFEARCQEKGGDGYINMHY 723

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + + G  + E+  K VF +F       R Q  GVGLG++IV+ ++++ GG +S+ S   
Sbjct: 724 RISDTGIGMSEEFTKEVFEKFAQEDSDVRTQYHGVGLGMAIVKKYVDMVGGTISVQSKKH 783

Query: 780 GVTTINCRIPSK 791
             TT    IP +
Sbjct: 784 EGTTFTVDIPLE 795


>gi|197121601|ref|YP_002133552.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196171450|gb|ACG72423.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 746

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 106/688 (15%), Positives = 225/688 (32%), Gaps = 53/688 (7%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSG---SCAFLRILSLDGIYSELAET 181
             L  A +  R   +         +   +   GR+     +        L     +L   
Sbjct: 73  GALLAAVDPERLAARVLPAREGEGSVGIVDRAGRLVARVPAIPLAWDDRLVAGAQDLVRA 132

Query: 182 TLKCKK----LSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA- 236
            L   +    + +       L  ++           ++ WA  + +        + ++  
Sbjct: 133 ALAGAEATGPMRSEGGGPARLAAAVPVP--------ELAWAVRATQPRAAMLAPMRRELA 184

Query: 237 ---IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAI 293
              +G              + +                G  ++ + +   +     G A 
Sbjct: 185 IGLLGAGLVALVALGASWAVGAHTSRALRRLERHAAALGRGEAPEPLTGPDEVVRLGAAY 244

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFD-QNRYLQFHNRSFVELWEID-LAFLATNPS 351
                  ++              V + I D      ++ N +++   +    +       
Sbjct: 245 -AQMARHLDAVRRRFEAAFAEAPVGVLILDPAELRARWANPAYLAFLDAPFRSEGVQGLR 303

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-----QTLHVIVTS 406
            +E L   + A  +            +  V      H++  +  +G           V +
Sbjct: 304 LEEFLPRAQEAGLV----------ALLREVAAGDVAHEEQEYRYDGFARGPTWWRWSVRA 353

Query: 407 NPRGG----TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
              GG     + M   +T QV    +     +     +  L  GV +    G++  +N A
Sbjct: 354 VESGGGRRDLVVMVSEVTEQVRGREQVEADRRRLEAVLRVLPVGVLIADAGGQVVQANDA 413

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-L 521
            R +W +         +    A         + G       + S +     L        
Sbjct: 414 ARRIWGSRAPLRPGALYREQRARRADSGAPLAAGDWALQRALRSGEAVGGELVEIDRFDG 473

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           + +V+     P+ + +  +     T     E         LR+A   ++  +Q VS++LR
Sbjct: 474 TQAVVLNGAAPIRDGEGRVVGAVTTLLDVTE---------LRRAVRNRDEVLQVVSHDLR 524

Query: 582 SPLTNII-GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +PL+ +  G   L +        ++  +    ++A+   +  L++D+LDL T++ G + +
Sbjct: 525 TPLSAVTLGAAALTRLPDGPEAAAQARRAAARLAAAGRRMNRLIDDLLDLETLEEGRLSM 584

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                   DLL E    +        + + + +   L     DR R+LQ+   + SNA+ 
Sbjct: 585 RPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVACDRDRVLQVLGNVASNAVK 644

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
            + +G+  +   A+ +G  IF V++ G  I +     VF+RF   +    R G GLGL+I
Sbjct: 645 ATEEGAVCLAAEAQADGAVIFRVRDTGPGIADADLPHVFDRFQRGSAARWR-GSGLGLAI 703

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
               +  HGG +   S+    TT++  +
Sbjct: 704 ARGLVEAHGGRIWAESAPGAGTTVSFTL 731


>gi|163792358|ref|ZP_02186335.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159182063|gb|EDP66572.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 528

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 123/245 (50%), Gaps = 5/245 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQY 609
           A   L+   +A   AD  K+ F+  +S+ELR+PL  IIGF++++     G + ++K   Y
Sbjct: 245 ASEELSRTRDAALTADRSKSMFLAAMSHELRTPLNAIIGFSEIMARQLYGPIGHAKYRDY 304

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I +S   LL L++D+LDL+ V+AG + L    + + + +    + +  +  ++ I +
Sbjct: 305 ANDIRSSGDHLLALIDDVLDLSRVEAGKLVLRREPLDVVEQIESCCRLVQGRATDSGIDL 364

Query: 670 KVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNG 727
           +         + + DR R  QI   +L+NA+ F+  G +V +    D  G  +  V + G
Sbjct: 365 RFAPAANPSATILGDRVRFRQILLNVLTNAVKFTDAGGSVQVDIGDDTAGTVVIRVADTG 424

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             + +D  + VF  F      G R   GVGLGL++  + +  H G ++I+S+    TT+ 
Sbjct: 425 IGMSDDDLERVFRPFEQAGVSGARAVEGVGLGLALSRALVREHDGTLNIASAPGRGTTVT 484

Query: 786 CRIPS 790
              P+
Sbjct: 485 LSFPT 489


>gi|254252656|ref|ZP_04945974.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124895265|gb|EAY69145.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 1265

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 111/614 (18%), Positives = 216/614 (35%), Gaps = 65/614 (10%)

Query: 196  KVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISS 255
            +   +      +  D  GD++                   A GE+       ++  +  +
Sbjct: 554  RTALERYAPPGFIVDDKGDVV-------HFRGDVSGFVAPASGEASLALPRLLQPELNVT 606

Query: 256  SALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNL 315
                    +                      G+A  A+DV   +  +D + H    L  L
Sbjct: 607  VRTALIEAKRTGQPVRRER---------VPLGDAHFALDV-LPLAADDLVPHFLVTLERL 656

Query: 316  TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
                   D          +           L     +  + E  R+   L ++L  +  +
Sbjct: 657  PD-----DA--------PA--------PDTLNAGSPHSRVQELERTITTLSDEL--EATQ 693

Query: 376  ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVK 434
              + +V    E+  +     N + L            + + +      + E    N  +K
Sbjct: 694  AQLKTVVAEFESANEELRTANEEMLSTNEELQSANEELLLAKQELESANQELASLNDELK 753

Query: 435  VQGETID-------HLSEGV----AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             + E +D       +L EG+     V     R++  +P  ++L++  +        +   
Sbjct: 754  SRNEQLDRVNDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQTLFRLPD------DSVGQP 807

Query: 484  AATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
             A  +  ++  D   +  + +    D E +           +V  Y          +L F
Sbjct: 808  LAQLNSLFSAVDLERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADDRIDGAVLAF 867

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKTSKLGS 601
             ++     A            +A+  K++F+  VS+ELR+PL  I  +   L+  S+ G 
Sbjct: 868  QDIHQLKSALGNAQSAQLDAERANTAKDNFLALVSHELRAPLNVISNWAAVLMAASERGV 927

Query: 602  LNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               +Q   + V  I     +   L++D+LD++ + +G   L+   +     +  V +S  
Sbjct: 928  PTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDAKPVDFAAAIRTVVESHR 987

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                +  I +             D +RL Q+ S ++ NA+ F+ +G  V +   R     
Sbjct: 988  PIAAKKAIVLATSDLQGQAIVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRLGALI 1047

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
              SV +NG  +  ++   +F+RF+ +     R   G+GLGLSIV+  +  HGG V+ SS 
Sbjct: 1048 ELSVTDNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTAHGGTVTASSE 1107

Query: 778  DEG-VTTINCRIPS 790
             EG  T +  RIP 
Sbjct: 1108 GEGRGTRLTVRIPL 1121


>gi|46578430|ref|YP_009238.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603988|ref|YP_968388.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|46447841|gb|AAS94497.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564217|gb|ABM29961.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|311232361|gb|ADP85215.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 602

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 100/578 (17%), Positives = 200/578 (34%), Gaps = 81/578 (14%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           +    + + +       E   L  +   +  + +++   +  E   +     +  Y  +R
Sbjct: 85  FTYIVDGKVMADSDVPAERVHLMDDHGGRPEVVAASRGGSGMEVRYSTTLRKDLVYAALR 144

Query: 282 VLN----SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
           V        G   +A+ VS+            + + ++   +               F  
Sbjct: 145 VEGIAGLPAGVIRVALPVSE----------VRDRIDSMETGL----------LWAFIFSL 184

Query: 338 LWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG 397
           L    L FL T P    +    R+A  + +    +  ++      +         H  NG
Sbjct: 185 LASGGLGFLVTRPFLGGIESMARAAQAIGQGDYGRRIRDIPGRELRPLA------HAING 238

Query: 398 QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
                            M  N+   + +               + + EGV V   +GRI 
Sbjct: 239 -----------------MAHNIERHLAV---LEEQKGRLEAVFNGMREGVMVLDAEGRIT 278

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N A  ++++   +++        +     R  ++    D                   
Sbjct: 279 TINRALTTMFEGIVSKIGRTPLEATMKPELQRAVDDLRAKDTTEG-----------RAIM 327

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           LEL      E +++P  +       +   D    E           K + I+  FV +VS
Sbjct: 328 LELSDGRAFEVNLVPFFDEAGRCVVLVFHDVSERE-----------KLERIRRDFVANVS 376

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +EL++PLT+I G+ + L  S   S   +   ++  I  ++  +  +VN +L LA  +   
Sbjct: 377 HELKTPLTSIKGYAETLLESPPASC-EQAGAFMRTILKNANHMTKMVNSLLVLARSEHKG 435

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
            K   + +   ++L +  +          I +    +G + + +ADR  L ++F  ++ N
Sbjct: 436 EKRVLAEVDAAEVLRQTLREFQPVARRKAIELVCEVEGAV-TVMADRDGLGEVFRNLMDN 494

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGV- 754
           AM +S +G+ V + A    G   F  ++ G  IPE+  + +F RF      G   + G  
Sbjct: 495 AMKYSPEGTRVSVSARPGAGVATFCFRDEGPGIPENSKERIFERFYRIEREGDTSKEGSA 554

Query: 755 GLGLSIVESFINLHGGHVSISSSDE----GVTTINCRI 788
           GLGL+I    +  HGG + + S  +            +
Sbjct: 555 GLGLAICRRIVRSHGGEIWVESPLDPATRRGAAFFITL 592


>gi|149918695|ref|ZP_01907183.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149820536|gb|EDM79950.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 679

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 4/229 (1%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             AD+ K  F+  VS+ELR+PL +I+GF  LL  +K   LN  Q + V+ I A    L  
Sbjct: 371 HDADQAKGEFLAAVSHELRTPLNSIMGFAQLLLETK---LNDSQVEDVKLILAGGRQLHE 427

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ DILDL+ +++G + L      L++L+ E+      ++ +  + +       L +   
Sbjct: 428 LIADILDLSMIESGELDLRVQHCALDELVAELVDIHQAQVRDRELELVADVADDLPTIEC 487

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           DR+R+ Q+ + ++SNA+ F+  GS  +      +     +V + G  I E     VF  +
Sbjct: 488 DRRRIGQVLTNLMSNAIKFTETGSVTVRARLEQDDYVSIAVIDTGIGIAESELPGVFEEY 547

Query: 743 VSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 + + +G GLGL+I    +  HGG +   S+    +T    +P 
Sbjct: 548 RQAGERKRKAKGTGLGLAIARRIVQAHGGRLEAESTLGEGSTFRLTLPL 596


>gi|323692410|ref|ZP_08106646.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum
           WAL-14673]
 gi|323503550|gb|EGB19376.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum
           WAL-14673]
          Length = 875

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 138/362 (38%), Gaps = 18/362 (4%)

Query: 443 LSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA 502
           +++    F   G  K  +    +   T       G   R      S Y    +       
Sbjct: 368 MADIRWDFNASGIYKQWHQQEDAEEDTAVYHFKAGAMERCSGHFVSGYVKFEENTVFTTE 427

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
                    K+    + +     L  ++  +  A+     V     ++    + E N   
Sbjct: 428 ERRILHIPLKAPGLCIPMYDGGKLMGAVSFIRKAEHSDWSVEECSELQEVVKIIETNINR 487

Query: 563 RKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            + D     K  F+  +S+E+R+P+  IIG T +              + +  I  SS  
Sbjct: 488 ERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAMDRAKQ--EEGVKECLIKIDQSSQY 545

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL+L+NDILD++ +++G MKL  +   +  +  E+   + ++M + NI        +   
Sbjct: 546 LLSLINDILDMSKIESGKMKLACNNGSIMKMAEEIDDLMESQMRQKNITCIRDIQVENPW 605

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----------RDNGDFIFSVKNNGS 728
             AD  RL Q+   + SNA+ F+++G  +                R+  +F F+V++NG 
Sbjct: 606 VYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYEQKMERRQPEDRNEAEFFFAVEDNGI 665

Query: 729 SIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I     + +FN F            G GLGLSI    + + GG + + S +   +  + 
Sbjct: 666 GISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSISSRLVRMMGGEIGLESREGEGSRFSF 725

Query: 787 RI 788
            +
Sbjct: 726 TL 727


>gi|256959113|ref|ZP_05563284.1| hypothetical protein EFEG_00565 [Enterococcus faecalis DS5]
 gi|256949609|gb|EEU66241.1| hypothetical protein EFEG_00565 [Enterococcus faecalis DS5]
          Length = 583

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 152/382 (39%), Gaps = 31/382 (8%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 226 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 279

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSI 530
              G   +N+ +       ++D   L   ++    S   E    QG   L  D  L Y  
Sbjct: 280 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRY-- 334

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   +A          D  R  +            ++++  FV +VS+EL++P+T+++GF
Sbjct: 335 LDDQSANDYQVLGIAYDLTRVRQL-----------EKMQKDFVSNVSHELKTPVTSLLGF 383

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+ L            +Q++  +   +  L  L+ +IL+L+   +  +      I L   
Sbjct: 384 TETLIDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKF 441

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +
Sbjct: 442 ITEILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITI 500

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
             A +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L 
Sbjct: 501 SYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELL 560

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG ++I S     TT    +P 
Sbjct: 561 GGKIAIDSHLGLGTTFTITLPL 582


>gi|218709447|ref|YP_002417068.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218322466|emb|CAV18619.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 574

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A++ K+ F+  +S+ELR+PL   IG  D LK++    LN +Q   +  +
Sbjct: 195 ELVAARKDAERANKAKSEFLAMMSHELRTPLNATIGLIDTLKST---PLNDEQQSILLNM 251

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S SS +LL +++D+LD + +++G   L        D +  V         +  + + + S
Sbjct: 252 STSSELLLAIISDVLDFSKIESGCFSLAPQWSNARDTVTFVLSEQKKIADDKGLSLTLTS 311

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D   G     D  RL QI   ++ NA+ F+  G  V +     +  F  SV++ G  I  
Sbjct: 312 DIPEGELHYIDPSRLAQILFNLIGNAIKFTEHGH-VHVSITYQHSSFRISVEDTGIGISS 370

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               S+F+ FV       RR  G GLGL+I +  + L  GH+S+ S     +    R+P
Sbjct: 371 QQLSSLFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGHISVESEPGKGSKFEVRLP 429


>gi|229090353|ref|ZP_04221596.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42]
 gi|228692936|gb|EEL46654.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42]
          Length = 466

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +      LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  IRI    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++++   +++   + +     S+K+ G  I  +  +++  RF        
Sbjct: 358 LHNVLDNAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKL 457


>gi|218889772|ref|YP_002438636.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218769995|emb|CAW25757.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 1212

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 161/394 (40%), Gaps = 25/394 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G   +    + V+  +E   +  ++      D +   + V   +GR+   N ++      
Sbjct: 550 GWVTYQRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGL 609

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVL 526
               +      R +       +   +    F         E ++++    +     +  +
Sbjct: 610 SSEEVMN----RTVLELPMENF---ETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWI 662

Query: 527 EYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           ++ I P  ++       +  ++++T+  +    L E      +A   K +F+  +S+E+R
Sbjct: 663 DHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIR 722

Query: 582 SPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +P+  +IG  +L LK ++ G ++      +E   AS+  LL L+ DILD+A +++G + L
Sbjct: 723 TPMNAVIGILELALKRAETGRVD---RSSIEIAYASAKSLLELIGDILDIARIESGRLSL 779

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAM 699
           +     L +L+  V +       +  + + +  D  + G  + D  R  QI S ++SNA+
Sbjct: 780 SPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAI 839

Query: 700 DFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGV 754
            F+ +GS  + +   +     +     V++ G  I     + +F  F           G 
Sbjct: 840 KFTDEGSIRIRIDGRQVEPSLLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQNTEGT 899

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL I  S   + GG + +SS     T I+  +
Sbjct: 900 GLGLVISRSLCEMMGGRLVMSSELGQGTRIDVEL 933



 Score = 41.9 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG--- 230
              ++       + LS+ +   + L D +   ++ RD  G +L  N SY ++        
Sbjct: 555 QRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEV 614

Query: 231 -----IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                +       E+   F       M     +E  +   +   E   +   +  R  + 
Sbjct: 615 MNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSG 674

Query: 286 F--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              G     +D+++   + D+L     +    + A   F
Sbjct: 675 TIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTF 713


>gi|47565087|ref|ZP_00236130.1| sensory box sensor histidine kinase/response regulator VC0622
           [Bacillus cereus G9241]
 gi|47557873|gb|EAL16198.1| sensory box sensor histidine kinase/response regulator VC0622
           [Bacillus cereus G9241]
          Length = 1018

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 119/267 (44%), Gaps = 3/267 (1%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           ++    +  A    +        R     +E    L++    K+ F+ + ++ELR+PL  
Sbjct: 394 DFYPFDIFLAMVSFSTFWFIRFFRTSDENSELVGKLKEEHHKKDQFLANTAHELRNPLHG 453

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++     +   +  ++N +  Q+++ +      +  L+ND++D+  ++   + ++   + 
Sbjct: 454 MMNIAQSVMDEE-KAINGESKQHLKLLMTIGRRMSYLLNDLIDVTRMEQKGIPIHKRPVD 512

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  ++  V         E  ++I      +    +AD+ RL+QI   +L NA+ F+ +G+
Sbjct: 513 LQPIITMVIDMQKFIGEEKKLQIIANIPERFPFVLADQNRLIQILFNLLHNAVKFTDEGA 572

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFI 765
            + +   +        V + G  I ++  K +F  +   +   G+  G GLGLSI +  +
Sbjct: 573 -ITIDVEKRKNYAAIQVTDTGIGIDKEAQKRIFLPYEQGSDSYGESGGFGLGLSICKQLV 631

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            +HGG ++++S     +T    +P  E
Sbjct: 632 EMHGGTLTVTSVLHKGSTFTFTLPLAE 658



 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 18/104 (17%)

Query: 694  ILSNAMDFS----SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            ++ NA+       +KG ++ +K    +G    S+ ++G  + ++  K +    V   ++ 
Sbjct: 920  LVENAVRHGILKKAKGGSIHIKIESVSGFINISIADDGIGMSDEKIKEI---LVKKPNQK 976

Query: 750  QRRGVGLGL----SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q    G+GL    +       L+G  + I S     T ++ ++P
Sbjct: 977  Q----GIGLLNTDA---RLKQLYGTGLEIKSELGKGTIVSFQLP 1013


>gi|320015940|gb|ADV99511.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 949

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 353 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 408

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 409 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 449

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 450 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 506

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 507 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 566

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 567 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 625

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 626 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 685

Query: 784 INCRIPS 790
              RIP 
Sbjct: 686 FAIRIPL 692


>gi|253565390|ref|ZP_04842845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
 gi|251945669|gb|EES86076.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
          Length = 511

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 192/499 (38%), Gaps = 37/499 (7%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL----RSA 362
           ++  IL  +   +  F+  + +   N    E  +I        PS  ++ + +    +  
Sbjct: 30  YSARILETMQTGVIFFNTEQIISGINNLACEDLQIPRD-----PSGHKITDIISIIHQEK 84

Query: 363 NKLPEQLNWKTWKENIFS------VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF 416
           +  PE +      E          + +S ET    +   +G  + +       G  +  F
Sbjct: 85  DIFPELIARLKSSETDMEKLPIDTLIRSLETKVQFF--ASGCIMQLET-----GRYLLAF 137

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE--ENRL 474
            N   +V  E   + ++                F       L +  + S       +  +
Sbjct: 138 RNTMDEVTHEHLLSMILARTKIFP-------WFFDLKRNKMLIDAHWFSYLGIPAGDCEI 190

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFA-AIITSFDDERKSLQGTLELLSDSVLEYSII-P 532
           +       +         ++    L    I  SF    +   G+ E  S+  +  S    
Sbjct: 191 TIEKFFSRVHPNERDMLADALQKQLSEKEIPDSFSYRLQRGDGSWEWFSEQSMYLSKTND 250

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               + +    ++ +    E  L       +++D +K++F+ ++S+E+R+PL  I+GF++
Sbjct: 251 GSPYRIVGVCHSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSN 310

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+    +     +   Y   IS +   LL LV+D+LDL+ +++  M   ++   L  LL 
Sbjct: 311 LIAGGIVDLDTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLT 370

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           E+ Q    ++ +  ++  ++          D  RL Q+   +L NA  F+ KG   I  A
Sbjct: 371 EIYQKYENRIPQ-EVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYA 429

Query: 713 ARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             D+G+     V + G  IP D  K VF RF       Q  G GLGLS+ ++ +   GG 
Sbjct: 430 LSDHGEKIYVFVADTGCGIPSDQYKKVFERFYKINSFVQ--GAGLGLSVCKTIVEGLGGT 487

Query: 772 VSISSSDEGVTTINCRIPS 790
           +++ S  +  +  +  +P 
Sbjct: 488 INVYSQLKEGSRFSVILPL 506


>gi|238763419|ref|ZP_04624382.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238763500|ref|ZP_04624462.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238698282|gb|EEP91037.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238698363|gb|EEP91117.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
          Length = 1189

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 156/380 (41%), Gaps = 18/380 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +          ++ Q   I+ L   V +    G + + N  F +  + + N +      +
Sbjct: 504 KRRQAKLLQARLRQQESIINALPFAVFIRTKKGELAVYNNHFAAAHQDKLNDMLNQKTEQ 563

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SVLEYSIIPLPNAQT-- 538
                 S    E D +  +       D + + +  +LE+ ++   +   IIPL NA+   
Sbjct: 564 AQWPMTSPLDREIDKYCRYVLR----DRQPQMVDLSLEINNELRDIFLWIIPLDNAERSL 619

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  +++++     ER L         A+  K++F+  +S+ELR+P+  I+G  +L    +
Sbjct: 620 LGGWLDISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL----E 675

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           + S        +  +S S+  L+ L++DI+D A ++AG + ++ + +     +  +    
Sbjct: 676 IRSDQPVDKNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIY 735

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAAR 714
                E N+R     D  +    + D  R+ Q+   +L NA+ F+ +G     +  ++  
Sbjct: 736 QPIADERNLRFSGWLDDHIPDLVMVDMLRVRQVMGNLLGNALKFTEQGGVSVDITWESID 795

Query: 715 DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGH 771
           +    +   + + G  I      ++F  F            G GLGL I    I+  GG 
Sbjct: 796 EKHGIMNIDITDTGIGISPAAQATLFQPFSQANEGTSPRFGGSGLGLWICHQLIHKMGGE 855

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +++ S     T++   +P +
Sbjct: 856 ITLESQLGKGTSLFITLPLE 875


>gi|228913339|ref|ZP_04076972.1| hypothetical protein bthur0012_5820 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846248|gb|EEM91267.1| hypothetical protein bthur0012_5820 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 422

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 168 TTTRNDEIGELSSSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKETTS 227

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 228 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNA 285

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 286 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSQIHISVIEENKRIS 344

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 345 ITMEDEGEGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEV 404

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 405 DHGSCFTISLPS 416


>gi|224476604|ref|YP_002634210.1| respiratory response protein SrrB [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421211|emb|CAL28025.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 584

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 149/379 (39%), Gaps = 46/379 (12%)

Query: 418 NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++   +D   + +    ++   I+ + EGV        I LSN   + +           
Sbjct: 241 DIQRHID---EISASKNIRDSLINSMVEGVLGINEKREIILSNEMAKKM----------- 286

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
                     S     +        +  +F ++    Q           +Y +    N +
Sbjct: 287 ----------SEQLRTTKKEQFTEQMDRTFKEKEIQFQ-----------DYEV----NNR 321

Query: 538 TMLTFVNVTDSVRAER----ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
             +  ++  +  +  +    A+        + D++K  F+ +VS+ELR+P+  + G+T+ 
Sbjct: 322 FYVVIMSYIEQFQPNQSGVVAIIRDMTNEHQLDQMKKDFIANVSHELRTPIALLQGYTES 381

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +    + S   +    +  +   +  L  LVN++L++A +DA  + +N     ++ LL  
Sbjct: 382 IVDGVV-SEPDEIRDSLSIVLDETQRLNRLVNELLNVARMDAEGLSVNKEVQPIDPLLER 440

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           ++     +  +  I I +  + +   +  D  R+ Q+ + ++ NA  ++S G  + +  +
Sbjct: 441 MQMKYRQQAEDLQIDINLAPNTEGQLWYYDTDRMEQVLTNLVDNASRYTSPGDAIKISTS 500

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
             +   I  V + GS I  +    VF+RF       +R   G GLGL I    I   GG 
Sbjct: 501 ESDKYDILYVTDTGSGIAPEHIDLVFDRFYKVDASRKRGKEGTGLGLFICRMIIEAQGGT 560

Query: 772 VSISSSDEGVTTINCRIPS 790
           + + S     TT   ++P 
Sbjct: 561 IDLKSRLGEGTTFIIKLPK 579


>gi|209399540|ref|YP_002271857.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327803|ref|ZP_03443886.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. TW14588]
 gi|209160940|gb|ACI38373.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4115]
 gi|217320170|gb|EEC28595.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. TW14588]
 gi|320192003|gb|EFW66648.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. EC1212]
 gi|326344183|gb|EGD67944.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. 1044]
          Length = 1127

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIH 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|82544838|ref|YP_408785.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella boydii Sb227]
 gi|81246249|gb|ABB66957.1| putative sensor for regulator EvgA [Shigella boydii Sb227]
          Length = 1197

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|16124976|ref|NP_419540.1| sensor histidine kinase / response regulator [Caulobacter
           crescentus CB15]
 gi|13421950|gb|AAK22708.1| sensor histidine kinase / response regulator [Caulobacter
           crescentus CB15]
          Length = 591

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 17/251 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL         A + K+ F+  +S+ELR+PL  ++G +  LK   L  L   + + VE 
Sbjct: 210 RALELAKSQAEAASQAKSEFLALMSHELRTPLNGMLGLSQALK---LEPLEPGEREQVEL 266

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL L+ND+LD+A ++AG + +  +   L+ L   V +    +  E    I + 
Sbjct: 267 LEESGRTLLALLNDVLDMAKIEAGKLDIAPTQEDLSRLAERVVRINQAQAREKGTEITLE 326

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
            D     + + D  R+ Q    ++SNA+ F+  G  + ++   + GD          V +
Sbjct: 327 IDPATPRALLFDPLRVRQCLGNLVSNAVKFTPAG-QIRVRVTCEAGDQPDRMLAKIIVSD 385

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  +   +   +F  F         +  G GLGL+I      + GG VS+ S++   +T
Sbjct: 386 TGVGMGPAVLARIFTPFEQADPTIARRTGGTGLGLNITRRLAQMMGGSVSVRSTEGKGST 445

Query: 784 IN----CRIPS 790
                 CR+PS
Sbjct: 446 FTLTFGCRLPS 456


>gi|186685045|ref|YP_001868241.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467497|gb|ACC83298.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 449

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/381 (20%), Positives = 161/381 (42%), Gaps = 13/381 (3%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL-----S 475
              + +       +   E  + + +   V  P G I+ +N A +++    +N L      
Sbjct: 63  ELFNAQQSLIAQGQRYQELFEEVPDAYLVTDPRGVIQEANSAAQNMLNISKNFLLGKALG 122

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                + + A   +  + SD  +     +  ++   +    T  + +  V          
Sbjct: 123 IFVLEKELIAFHLKLTHLSDRAETPDWKMQEWEVNLRPRNKTPIIAAMKVAAIRNQQGNL 182

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALR-------KADEIKNSFVQHVSYELRSPLTNII 588
                   ++++S R +  L    EA+R       +  E+K+  +   S+E R+PLT I 
Sbjct: 183 VGLRWLVRDISESKRLQAKLQWAEEAMRQALAKEREFSELKSRLLTTASHEFRNPLTTIH 242

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
              +LL+  +    + +Q  ++  I  S   +  L+ND+L L   + G ++ N + + L 
Sbjct: 243 SSAELLEHYRHLWSDERQQIHLRRIQTSVMHITQLLNDLLVLNQDETGKLEFNPTPLNLV 302

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +   ++ + +  +   +   I   S+ +  S   D + L QI + + SN + +S  GSTV
Sbjct: 303 EFCRDLLEELE-QSDRSQHAIVFSSECQCPSANLDAKLLRQILTNLFSNCLKYSPIGSTV 361

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                  N   IF  +++G  IP    + +F  F   ++ G   G+GLG+SIV+  ++LH
Sbjct: 362 KFSVTTANERAIFQTQDSGIGIPPADIEHIFEPFHRASNTGNIPGMGLGMSIVKQGVDLH 421

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG + + S+ +  TT    +P
Sbjct: 422 GGEIIVESAIDAGTTFTVILP 442



 Score = 43.0 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 84/276 (30%), Gaps = 19/276 (6%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP----- 350
           + + ++  Q     E+   +  A  + D    +Q  N +   +  I   FL         
Sbjct: 66  NAQQSLIAQGQRYQELFEEVPDAYLVTDPRGVIQEANSAAQNMLNISKNFLLGKALGIFV 125

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG 410
              EL+ F      L ++     WK  +     +      T  +   +   +        
Sbjct: 126 LEKELIAFHLKLTHLSDRAETPDWK--MQEWEVNLRPRNKTPIIAAMKVAAIRNQQGNLV 183

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           G  W+  +++    L+ K     +   + +    E    F      +L +    +     
Sbjct: 184 GLRWLVRDISESKRLQAKLQWAEEAMRQALAKERE----FS-----ELKSRLLTTASHEF 234

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV--LEY 528
            N L+       +       +++         I TS     + L   L L  D    LE+
Sbjct: 235 RNPLTTIHSSAELLEHYRHLWSDERQQIHLRRIQTSVMHITQLLNDLLVLNQDETGKLEF 294

Query: 529 SIIPLPNAQTMLTFVNVTD-SVRAERALTEKNEALR 563
           +  PL   +     +   + S R++ A+   +E   
Sbjct: 295 NPTPLNLVEFCRDLLEELEQSDRSQHAIVFSSECQC 330


>gi|30264742|ref|NP_847119.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47530215|ref|YP_021564.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187560|ref|YP_030813.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|65322039|ref|ZP_00394998.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869725|ref|ZP_02214383.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167634004|ref|ZP_02392327.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170685756|ref|ZP_02876979.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170705544|ref|ZP_02896008.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|190568318|ref|ZP_03021226.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227817461|ref|YP_002817470.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229604734|ref|YP_002868950.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254687480|ref|ZP_05151336.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254725043|ref|ZP_05186826.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254741818|ref|ZP_05199505.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254754584|ref|ZP_05206619.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254757416|ref|ZP_05209443.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30259417|gb|AAP28605.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47505363|gb|AAT34039.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181487|gb|AAT56863.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164714554|gb|EDR20073.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167530805|gb|EDR93507.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129669|gb|EDS98532.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170670220|gb|EDT20960.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|190560574|gb|EDV14551.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227002759|gb|ACP12502.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229269142|gb|ACQ50779.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 484

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 125/271 (46%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFHI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|226227766|ref|YP_002761872.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca
           T-27]
 gi|226090957|dbj|BAH39402.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca
           T-27]
          Length = 479

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 154/390 (39%), Gaps = 39/390 (10%)

Query: 410 GGTIWMFEN----LTVQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFR 464
           GG +    +    L  Q+D   +     +     + + L+EGVA      R+   N   R
Sbjct: 111 GGEVGDLADALRLLAEQLDARLQLLHAEEALLVALTESLNEGVAAVDARQRVVRINETGR 170

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            L + +E    P  ++        R   E+    L   I    +            + D 
Sbjct: 171 QLLRLKEPVPFPADYL-----PRERMLREALAAALAGTIAAPSE----------IRVDDR 215

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            L  +  PLP+   +L   ++T   R E               ++  FV +VS+ELR+PL
Sbjct: 216 TLSLTARPLPDGGAVLALYDLTPVRRLE--------------AVRRDFVANVSHELRTPL 261

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I GF + L+  +L      ++Q+++ + AS   +  +V+D+LDL+ +++G    N   
Sbjct: 262 TVIGGFVETLQDEQLPP--ELRTQFLQMVDASVRRMQRIVDDLLDLSRIESGGWLPNPIE 319

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + +  L  E+   +        + + V          AD     QI + +  NA+  +  
Sbjct: 320 LDVAVLAAEIIAPLERPAAAKGVALHVEIAPGAERVYADPTAARQILTNLAENALRHTPT 379

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVE 762
           GS V L A+   G     V++ G  I  +    +F RF         +  G GLGLSIV 
Sbjct: 380 GS-VTLLASPAEGGVWIGVRDTGVGIGAEHLPRIFERFYRADPARSREAGGTGLGLSIVR 438

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                HGG V   S+    TTI   +P  E
Sbjct: 439 HLTEAHGGRVRADSTLHVGTTIQAWLPKAE 468



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 66/198 (33%), Gaps = 33/198 (16%)

Query: 243 LFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDV-SKEITV 301
           +  + + + +       ++    ++  +     S++I       G+   A+ + ++++  
Sbjct: 73  VLAQVLARPVARPIEELRDVARGLAAGDLTQRPSHEI--AGGEVGDLADALRLLAEQLDA 130

Query: 302 NDQLTHTYEIL-----HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
             QL H  E L      +L   +A  D  + +   N +  +L                  
Sbjct: 131 RLQLLHAEEALLVALTESLNEGVAAVDARQRVVRINETGRQL------------------ 172

Query: 357 EFLRSANKLPEQLNW----KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
             LR    +P   ++    +  +E + +    +        + + +TL +     P GG 
Sbjct: 173 --LRLKEPVPFPADYLPRERMLREALAAALAGTIAAPSEIRVDD-RTLSLTARPLPDGGA 229

Query: 413 IWMFENLTVQVDLETKYN 430
           +    +LT    LE    
Sbjct: 230 VLALYDLTPVRRLEAVRR 247


>gi|153948861|ref|YP_001401729.1| RcsB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960356|gb|ABS47817.1| sensor kinase protein RcsC [Yersinia pseudotuberculosis IP 31758]
          Length = 949

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 353 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 408

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 409 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 449

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 450 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 506

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 507 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 566

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 567 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 625

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 626 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 685

Query: 784 INCRIPS 790
              RIP 
Sbjct: 686 FAIRIPL 692


>gi|254285404|ref|ZP_04960369.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae AM-19226]
 gi|150424676|gb|EDN16612.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae AM-19226]
          Length = 1146

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 15/363 (4%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             ++   E +D +   + +      + L+N A+R ++ T                 CS +
Sbjct: 492 EQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTC-----CEKGCVQPQPECS-F 545

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               D  +   +II        S+      ++   + + I        +  F ++T+   
Sbjct: 546 LALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRAISHPIN--QRKYYLTLFNDITELKE 603

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            E+AL + NE   +A E +N F+  VS+ELR+P+  ++G  ++L +      +S+    +
Sbjct: 604 TEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRLK---SSESQLLL 660

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
               +S+  L   VNDILD + ++A  ++L+     L D L  + +          I   
Sbjct: 661 TNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEASAQLKEIEFD 720

Query: 671 VI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           VI S   L     D  R  QI + +LSNA+ F+ +G  V+ K           V++ G  
Sbjct: 721 VIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQG-RVVFKIDVAPEMLTIVVEDTGCG 779

Query: 730 IPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + +   +S+F  F        RR  G GLG+SIV + I L  G + + S  E  T I   
Sbjct: 780 MTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKIEVKSKFEQGTQIQVN 839

Query: 788 IPS 790
           +P 
Sbjct: 840 LPL 842


>gi|51473428|ref|YP_067185.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington]
 gi|51459740|gb|AAU03703.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington]
          Length = 498

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 238 TNYARQIIEEQLATNRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I  +   LL+++NDILDL+   A  +K++   + LN L++     
Sbjct: 298 R---DTEKSKNYIKDIHDAGKHLLSMINDILDLSKASADKLKVDNIDLDLNKLISSSLIL 354

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           I  +  +  + +      +     AD +RL Q+   +LSNA+ F++ G +V +   +D  
Sbjct: 355 IKPRADQAEVELISRLPKEHIVINADPKRLKQVLLNLLSNAVKFTNTGGSVTIALEKDEL 414

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 415 AKLVYIKVIDTGIGIEEKDIPKTLSEFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 474

Query: 774 ISSSDEGVTTINCRI 788
           + S     TT+    
Sbjct: 475 LQSQINKGTTVTITF 489


>gi|15600677|ref|NP_254171.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|107104586|ref|ZP_01368504.1| hypothetical protein PaerPA_01005665 [Pseudomonas aeruginosa PACS2]
 gi|218894587|ref|YP_002443457.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|9951818|gb|AAG08869.1|AE004961_4 probable two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|218774816|emb|CAW30634.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 595

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 151/357 (42%), Gaps = 19/357 (5%)

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
            +     +D + +G+ +F   GRI+ +NP    + +   +    G  I  I +       
Sbjct: 257 ERRLQAVLDSIDDGLVIFDNQGRIEHANPVA--IRQLFVSNDPHGKRIDEILSDVD---- 310

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
                 +  A++    DE              +L +S+ P+ +         +      E
Sbjct: 311 --VQEAVEKALLGEVQDEAMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAVLVVRDVTE 368

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +            + +++ FV   S+ELR+P+T +     LL+        S+++  ++ 
Sbjct: 369 QR---------AFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLIQT 419

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +    + L+ L+ND+L+ +    G+ KL  ++  L DLL + +Q    K     + +++ 
Sbjct: 420 VDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQLE 479

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
              +L     DR ++ ++   +L NA+  SS+G  + L+A R     + +V++NG  IP 
Sbjct: 480 LGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGIPF 539

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                +F  FV      ++ G GLGL++ +  I LHGG +++ S           +P
Sbjct: 540 SQQGRIFEPFVQVG--RKKGGAGLGLALCKEIIQLHGGRIAVRSQPGQGARFYMLLP 594


>gi|313497980|gb|ADR59346.1| Integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida BIRD-1]
          Length = 643

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+    L+S+Q
Sbjct: 243 EQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETT---PLSSEQ 299

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y    S S+  LL ++NDILD + ++   ++L +    L +L+    QS      +  
Sbjct: 300 ADYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDFNLGELITNSVQSFQHSAQQRG 359

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + + +      +      D  R+ QI   ++ NA+ F+ +G   V  +    +   I   
Sbjct: 360 LGLHLQLPAGIEQLQVNGDPTRIRQILLNLVGNALKFTERGQVQVDARWQVLDRQLIWLT 419

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV++ G  I  D  + +F  F         +  G GLGLSI  +     GG +   S +
Sbjct: 420 CSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAERMGGKLRGESRE 479

Query: 779 EGVTTINCRIPS 790
              +T    +P 
Sbjct: 480 GLGSTFTLEMPL 491


>gi|190890965|ref|YP_001977507.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696244|gb|ACE90329.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 513

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 3/243 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQS 607
            +       +      A++ K+ F+  VS+ELR+PL  I+GF+D+L     G   N +Q 
Sbjct: 222 QQLRAEAQSRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQR 281

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +YV  +  S   LL++VN +LD++ ++AG  +L      ++  +   +  +A +     +
Sbjct: 282 EYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLALQAKTKGV 341

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            +       LG  VAD++ + QI   ++ NA+ F+  G  V + AA  +G    +V + G
Sbjct: 342 TLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGGVVSIDAAARDGILKLTVSDTG 401

Query: 728 SSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  D    +   FV   N +  +  G GLGLS+V+  + LHGG+ +I+S     T I 
Sbjct: 402 IGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIASQPGEGTIIT 461

Query: 786 CRI 788
             I
Sbjct: 462 IEI 464


>gi|153809580|ref|ZP_01962248.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
 gi|149127783|gb|EDM19007.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
          Length = 917

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 153/378 (40%), Gaps = 14/378 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLS 475
           +N++    L  +          T   +      F   GR     N             + 
Sbjct: 396 QNISKLHRLNEELKERNYKMELTFKTVGMSYWDFDVTGRKFTAFNDPVNDYHPETPIDVD 455

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                   A    R         +       F+ + +S     +     ++    +    
Sbjct: 456 QYLS---AAHPDDRELVRKYFEGMIEGKEQEFNFQYRSKTKWNKEWQTLIITGIQVERDK 512

Query: 536 AQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
              ++ +     N T   +  + L    +    +D +K++F+ ++S+E+R+PL  I+GF+
Sbjct: 513 RGKIIRYTGIGFNNTKWEKMAQELKILKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFS 572

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            L+          ++++Y+E I +++ +LL L+NDILDL+ +++GI++       L  + 
Sbjct: 573 GLM---VNCDDPEEKAEYMEIIESNNDLLLRLINDILDLSKIESGILERKREKFNLAKVS 629

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
            E+   I  K+    +   + + G       DR RL Q++   L+NA+  +  G  + + 
Sbjct: 630 GELYTMIQPKITNPEVEFILGNSGPDCWIFLDRNRLKQVWMNFLTNAVKCTHSGH-IKMG 688

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            + +NG     V+++G  IP ++   VF RF       Q  G GLGL+I  + I   GG 
Sbjct: 689 YSLENGGIKVYVEDSGVGIPYEVQNRVFGRFQKLNEFAQ--GTGLGLAISRAIIEGAGGE 746

Query: 772 VSISSSDEGVTTINCRIP 789
           +  +S+    +T    IP
Sbjct: 747 IGFTSTPGVGSTFWAWIP 764


>gi|325679937|ref|ZP_08159506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324108375|gb|EGC02622.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 1233

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 130/260 (50%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  MLT   +     A+R L +  ++   ADE K+SF+  +S+E+R+P+  ++G  +++ 
Sbjct: 675 AVYMLTNNLIAMQDEAKRQLKQSADSAIAADEAKSSFLAQMSHEIRTPINAVLGMNEMIL 734

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                  +    +Y   I ++   LL+L+N ILD + ++ G M++  +      ++N++ 
Sbjct: 735 REC---TDDDIKEYAVNIQSAGRTLLSLINSILDFSKIEDGKMEIIPAAYGTASMINDLV 791

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAA 713
            +++ +    ++ +KV +D  L +  + D  R+ Q+ S +L+NA+ ++ KGS T+ +KA 
Sbjct: 792 TAVSARAAAKDLTLKVNADPALPAKLIGDDMRIKQVISNLLTNAVKYTEKGSVTLTVKAE 851

Query: 714 ---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
                +      V + G  I E+   ++F  F     +  R   G GLG+SIV   + + 
Sbjct: 852 DLTEKDMVLYVEVADTGIGIKEEDIGALFETFRRLDEKRNRSIEGTGLGMSIVTKLLEMM 911

Query: 769 GGHVSISSSDEGVTTINCRI 788
           G  + + S     +T   R+
Sbjct: 912 GSELHVESIYGVGSTFWFRL 931


>gi|229127392|ref|ZP_04256387.1| hypothetical protein bcere0015_18440 [Bacillus cereus BDRD-Cer4]
 gi|228656074|gb|EEL11917.1| hypothetical protein bcere0015_18440 [Bacillus cereus BDRD-Cer4]
          Length = 351

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 228

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+ ++           ++++G  I E
Sbjct: 229 -DLEKVYVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    R+P+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|158339071|ref|YP_001520248.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309312|gb|ABW30929.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1764

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 15/259 (5%)

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
             N     +A++          +A+  K+ F+ ++S+ELR+PL  I+GF+ L+      S 
Sbjct: 1265 FNNQQLAKAKQEAETAQRKAEQANRAKSIFLANMSHELRTPLNAILGFSQLISRDP--ST 1322

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             + Q + +E I+ S   LL L+ND+L ++ ++AG   L    + L  LL+ V+  +  K 
Sbjct: 1323 PNYQLEQLEIINRSGEHLLALINDVLTMSKIEAGRSSLRSQIVDLPLLLDTVENMLGLKA 1382

Query: 663  HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV------ILKAARD 715
             +  +++          ++  D  +L Q+   +LSNA+ F++ G          L     
Sbjct: 1383 EKKGLKLIFDRGLTPPHYIRTDPGKLRQVLMNLLSNAIKFTTSGHVQLCLESNTLDTPEG 1442

Query: 716  NG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHG 769
             G     D  F+V + GS I  +  K +F  F       Q + G GLGL+I   F+ + G
Sbjct: 1443 AGVPPLLDVRFTVSDTGSGIAPEELKLLFEPFAQTETGRQSQEGTGLGLAISRQFVQIMG 1502

Query: 770  GHVSISSSDEGVTTINCRI 788
            G+++  S     TT+   I
Sbjct: 1503 GNLTAHSIHNQGTTLTFNI 1521



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 52/160 (32%), Gaps = 19/160 (11%)

Query: 162 SCAFLRILSLDGIYSELAETTLKCKKLSNHIS-------VFKVLFDSLDFLVWHRDQAGD 214
             A      L     + A+ + K ++L   I        + K++ DS+   ++ +D+A  
Sbjct: 708 GIALAHANLLAQELQQRAQLSQKNQQLQTEIEEKKQTQTLLKLVMDSIPQAIFWKDKASR 767

Query: 215 ILWANISYKKNT------ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST 268
            L  N ++ +        +  G   Q+    S +     +    + +S   +        
Sbjct: 768 YLGCNQAFAQEAGFNTAEDIIGKTDQEMPWSSEEAEWHRLSDLEVMNSKQPQFHVLETHL 827

Query: 269 LEHGNNKSYKIVRVLNS------FGEAGIAIDVSKEITVN 302
              G        +V          G  G + D+++ I + 
Sbjct: 828 RADGTKTWLDTNKVPLHNLKGQVVGLLGTSEDITERIQIE 867


>gi|145300269|ref|YP_001143110.1| aerobic respiration control sensor protein ArcB [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853041|gb|ABO91362.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 770

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 18/374 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   +        +    ID   + V     D +    N A   L    E  L   T   
Sbjct: 143 REKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELTGRVEAELIGLTPFD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                 +    E+D     +    +++   +   G       +  E   +P  +      
Sbjct: 203 VYKQEIANKVVETDKQVFTSNEPLTYEQWLEYPDG-----RKAYFELRKVPFFDRFGKRL 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER   +  + L KA   K +F+  +S+ELR+PL  I+G + +L  +    
Sbjct: 258 GLLGFGRDITER--KQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDT---P 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+ +Q Q ++ I  S+  L N+ NDI+DL  +D   +++  + I L   L+E++     +
Sbjct: 313 LDPRQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETLSRIQ 372

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF- 719
             +  + +    DG +  FV AD  RL Q+   ++ NA+ F+ +G  V ++      D  
Sbjct: 373 AEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGG-VTVRCLSHAADVP 431

Query: 720 -----IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                 F V++ G  IP    + +F  +     +    G G+GL++    +   GG + +
Sbjct: 432 GKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGQLYV 491

Query: 775 SSSDEGVTTINCRI 788
            S     +     +
Sbjct: 492 DSDPGEGSCFTAEL 505



 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 76/202 (37%), Gaps = 19/202 (9%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQ---NDCAIKIEGRVSGSCAFLRILSLDGIYSE 177
                +L++   KL+   +  DL   +Q   N   +  +   +     LR  +++ + +E
Sbjct: 81  EDSRQRLTRMVRKLQDMRER-DLELNSQLQENISRLNAQIAETNRAETLRQQAIEDLENE 139

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           + +       L    ++ +   D    LV++R++       N + ++ T   G V  + I
Sbjct: 140 VFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELT---GRVEAELI 196

Query: 238 G-ESRKLFKEEIKKRMISSSALEKNFCETVS-----TLEHGNNKSYKIVRVL------NS 285
           G     ++K+EI  +++ +        E ++         G    +++ +V         
Sbjct: 197 GLTPFDVYKQEIANKVVETDKQVFTSNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKR 256

Query: 286 FGEAGIAIDVSKEITVNDQLTH 307
            G  G   D+++     D+L  
Sbjct: 257 LGLLGFGRDITERKQYQDKLEK 278


>gi|326340179|gb|EGD63983.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. 1125]
          Length = 1139

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 460 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 519

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 520 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 578

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 579 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIH 638

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 639 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 696

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 697 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 756

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 757 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 816

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 817 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 876

Query: 789 PSK 791
           P +
Sbjct: 877 PVE 879


>gi|164657947|ref|XP_001730099.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966]
 gi|159103994|gb|EDP42885.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966]
          Length = 1333

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 111/238 (46%), Gaps = 12/238 (5%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             EA   A+  K+ F+ ++S+E+R+P+  IIG T L   ++   L+  Q + +  +S  ++
Sbjct: 785  REAAELANRSKSEFLANMSHEIRTPMNGIIGMTSLTLETE---LSRTQRENLVTVSTLAS 841

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL +++DILD++ ++AG M +      L  ++  V ++++ +  +  + +       + 
Sbjct: 842  NLLAIIDDILDISKIEAGRMNIEEIPFSLRGIVFSVLKTLSVRAAQKKLNLVYEVAPNVP 901

Query: 679  -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------NGDFIFSVKNNGSSIP 731
               + D  RL QI + ++ NA+ F+  G  V L+   +           F   ++G  I 
Sbjct: 902  DPLIGDALRLKQIITNLIGNAVKFTESGGIVALRCKLNSAPGAPETVLEFCASDSGIGIK 961

Query: 732  EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +D    +F+ F        R   G GLGLSI    +NL GG + + S     +     
Sbjct: 962  QDKLDMIFDTFCQADGSTTRKYGGTGLGLSISRRLVNLMGGDMWVRSHFGKGSDFFFT 1019


>gi|120611638|ref|YP_971316.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
 gi|120590102|gb|ABM33542.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
          Length = 663

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 154/395 (38%), Gaps = 34/395 (8%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +   + L      E       +           G+ +   DGR    NPA   +     
Sbjct: 125 LVGTLQALIRARTAEDSLRRSDRRFRAIYSQALSGIGLLERDGRFTDVNPAMARVL---- 180

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLE 527
                G   + +       +      D F    T    +  + QG   L+  S     LE
Sbjct: 181 -----GRTRQEVLGRAISDFAPPGWVD-FVKDKTVDTGQSATWQGEFPLMRPSGQWVYLE 234

Query: 528 YSI-----------IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           +SI           +    ++ +       + +  E+A     E L      K+ F+  +
Sbjct: 235 WSISAHVEPGMRMALAADISERVELDSRRQEVLEREQAARATAERL---SRTKDDFIAVL 291

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL  I G+  +LK         +  + ++ I  +      +++DILD++ +++G
Sbjct: 292 SHELRTPLNAIAGWVHILKRRGG---TPELIKGLDSIHRNVKAQARIISDILDVSRINSG 348

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            + L        +++     ++   + E ++ I + +   +G    D  R  QIF  +L+
Sbjct: 349 KLHLEREWTQPIEVVRSAIDALQASIAEKHLEIVLRAGEDIGPAWLDPTRFQQIFWNLLT 408

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGV 754
           NA+ FS+    + +  +RD+     +V++ G  I  +  + +F+RF  +      +  G+
Sbjct: 409 NAIKFSNDSGRIDVSLSRDDDALTLTVQDFGRGISPEFIEHLFDRFTQSDSPDNRRHGGL 468

Query: 755 GLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
           GLGLSIV+    LHGG     S+     TTI   +
Sbjct: 469 GLGLSIVKHLAELHGGGAEAYSAGTGEGTTITVTL 503



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 77/210 (36%), Gaps = 17/210 (8%)

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNN--KSYKIVRVLNSFGEAGIAI 293
           A+  + +  ++  +  ++  SA   +  + V+ L  G +   ++ +   +       +  
Sbjct: 75  AVCRALRTREDTAQLPVMHLSAAHVHAEDRVTGLNAGADAYLTHPVEPAVLVGTLQALIR 134

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
             + E ++         I       I + +++      N +   +            +  
Sbjct: 135 ARTAEDSLRRSDRRFRAIYSQALSGIGLLERDGRFTDVNPAMARVLG---------RTRQ 185

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSE-THKDTWHLPNGQT--LHVIVTSNPR- 409
           E+L    S    P  +++   K+      +S+    +     P+GQ   L   ++++   
Sbjct: 186 EVLGRAISDFAPPGWVDF--VKDKTVDTGQSATWQGEFPLMRPSGQWVYLEWSISAHVEP 243

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGET 439
           G  + +  +++ +V+L+++   +++ +   
Sbjct: 244 GMRMALAADISERVELDSRRQEVLEREQAA 273



 Score = 38.0 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 18/194 (9%)

Query: 132 EKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAF--------LRILSLDGIYSELAETTL 183
             LR    +  L     +   +  E RV+G  A         +    L G    L     
Sbjct: 78  RALRTREDTAQLPVMHLSAAHVHAEDRVTGLNAGADAYLTHPVEPAVLVGTLQALIRART 137

Query: 184 KCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL 243
               L      F+ ++      +   ++ G     N +        G   Q+ +G +   
Sbjct: 138 AEDSLRRSDRRFRAIYSQALSGIGLLERDGRFTDVNPA---MARVLGRTRQEVLGRAISD 194

Query: 244 FKEEIKKRMISSSALEKNFCET-------VSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           F        +    ++     T       +          + I   +       +A D+S
Sbjct: 195 FAPPGWVDFVKDKTVDTGQSATWQGEFPLMRPSGQWVYLEWSISAHVEPGMRMALAADIS 254

Query: 297 KEITVNDQLTHTYE 310
           + + ++ +     E
Sbjct: 255 ERVELDSRRQEVLE 268


>gi|91787248|ref|YP_548200.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91696473|gb|ABE43302.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1197

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 15/266 (5%)

Query: 535 NAQTMLTFVNVTDSVRAERALT-------EKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           N QT L    +    + + AL            A  +A++ K+ ++  +S+ELR+PL +I
Sbjct: 691 NRQTHLLMREIELHRQTDEALQLAKLHAEHARHAADQANQAKSRYISAISHELRTPLNSI 750

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G+  L+   +  ++   + Q V  I      LL+L+   LD+A ++AG + L    +  
Sbjct: 751 LGYAQLM--GEDAAIPPHRKQAVSVIRRGGEHLLSLIEGTLDIARIEAGKLTLTVKPMQF 808

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            D ++E+      +     +  +  + G L   V AD +R+ QI   +L NA+ F+++G 
Sbjct: 809 ADCVHEMAGMFELQAAAKGLGFRFETAGNLPELVRADEKRVRQILINLLGNAIKFTAQG- 867

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ----RRGVGLGLSIVE 762
            VI +           +++ G  + E     +F  F   A  G       G GLGL+I +
Sbjct: 868 QVIFRLRHAREMAYIDIEDTGPGMSEAELAQIFEPFARGAAAGHSAEGTPGAGLGLTIAK 927

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
              +L GG +++ S+    +    R+
Sbjct: 928 MLTDLMGGEMTVLSTPGQGSVFRVRL 953


>gi|308189064|ref|YP_003933195.1| aerobic respiration control sensor protein [Pantoea vagans C9-1]
 gi|308059574|gb|ADO11746.1| aerobic respiration control sensor protein [Pantoea vagans C9-1]
          Length = 783

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 145/376 (38%), Gaps = 14/376 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E +T +   + +           +D   + V     D +    N A   L    E +L  
Sbjct: 138 EEVTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTGKSEKQLIG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         +    E+D       +  +++   +   G       +  E   +P  + 
Sbjct: 198 LTPRDIYDDEAATKVLETDEKVFRHNVSLTYEQWLQYPDG-----RKACFEIRKVPYYDR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               + +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 253 VGKRSGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLD 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q +Y++ I  S+  L N+ ND++++  ++   ++L+   +     L +++ 
Sbjct: 311 T---DLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPLDFTGFLADLEN 367

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                     ++  +     L   +  D  RL QI   ++ NA+ F+ +G  V+  A   
Sbjct: 368 LSGLLAQPKGLKFVLAPQLPLPHMISTDGTRLRQILWNLIGNAVKFTQQGEIVVRVAYEQ 427

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           +    F V+++G  I ++    +F  +     +   +   G G+GL++        GG +
Sbjct: 428 DETLRFEVQDSGMGIRQEEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQAMGGDI 487

Query: 773 SISSSDEGVTTINCRI 788
            + S+    +     I
Sbjct: 488 HVHSAPGQGSCFTVEI 503



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 27/206 (13%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVA-----ETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +L++  +KL +E ++ DL       ET      +I  R     A  R   +D + 
Sbjct: 81  EESRQRLARLVDKL-EEMRTRDLELNQQMKETITQLNQEISDRKKAELA--REQVMDKLR 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            E+        +L    S  +   D+   LV++R+        N + +  T   G   ++
Sbjct: 138 EEVTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLT---GKSEKQ 194

Query: 236 AIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------VR 281
            IG   R ++ +E   +++ +   EK F   VS           G    ++I       R
Sbjct: 195 LIGLTPRDIYDDEAATKVLETD--EKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDR 252

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTH 307
           V    G  G   D+++     D L +
Sbjct: 253 VGKRSGLMGFGRDITERKRYQDALEN 278


>gi|15903149|ref|NP_358699.1| sensory box sensor histidine kinase [Streptococcus pneumoniae R6]
 gi|116515922|ref|YP_816555.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39]
 gi|148985121|ref|ZP_01818360.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP3-BS71]
 gi|148989248|ref|ZP_01820628.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP6-BS73]
 gi|148998656|ref|ZP_01826095.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP11-BS70]
 gi|149007116|ref|ZP_01830785.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP18-BS74]
 gi|149012277|ref|ZP_01833346.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP19-BS75]
 gi|149019218|ref|ZP_01834580.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484878|ref|ZP_02709823.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00]
 gi|168486548|ref|ZP_02711056.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00]
 gi|168491147|ref|ZP_02715290.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04]
 gi|168493148|ref|ZP_02717291.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06]
 gi|168577195|ref|ZP_02723004.1| sensor protein YycG [Streptococcus pneumoniae MLV-016]
 gi|169833288|ref|YP_001694657.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6]
 gi|182684046|ref|YP_001835793.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           CGSP14]
 gi|221231921|ref|YP_002511073.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854692|ref|YP_002736204.1| sensor protein YycG [Streptococcus pneumoniae JJA]
 gi|225856893|ref|YP_002738404.1| sensor protein YycG [Streptococcus pneumoniae P1031]
 gi|225859007|ref|YP_002740517.1| sensor protein YycG [Streptococcus pneumoniae 70585]
 gi|225860940|ref|YP_002742449.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649928|ref|ZP_04524180.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974]
 gi|237822523|ref|ZP_04598368.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230883|ref|ZP_06964564.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254364|ref|ZP_06977950.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502778|ref|YP_003724718.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067875|ref|YP_003876841.1| signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|307127186|ref|YP_003879217.1| sensor protein YycG [Streptococcus pneumoniae 670-6B]
 gi|15458731|gb|AAK99909.1| Histidine kinase [Streptococcus pneumoniae R6]
 gi|116076498|gb|ABJ54218.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39]
 gi|147755493|gb|EDK62541.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147761420|gb|EDK68386.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147763603|gb|EDK70538.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922566|gb|EDK73684.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925226|gb|EDK76305.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147931088|gb|EDK82067.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168995790|gb|ACA36402.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6]
 gi|172041979|gb|EDT50025.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00]
 gi|182629380|gb|ACB90328.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           CGSP14]
 gi|183570459|gb|EDT90987.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00]
 gi|183574369|gb|EDT94897.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04]
 gi|183576651|gb|EDT97179.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06]
 gi|183577215|gb|EDT97743.1| sensor protein YycG [Streptococcus pneumoniae MLV-016]
 gi|220674381|emb|CAR68931.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669]
 gi|225721122|gb|ACO16976.1| sensor protein YycG [Streptococcus pneumoniae 70585]
 gi|225723105|gb|ACO18958.1| sensor protein YycG [Streptococcus pneumoniae JJA]
 gi|225725453|gb|ACO21305.1| sensor protein YycG [Streptococcus pneumoniae P1031]
 gi|225728161|gb|ACO24012.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238373|gb|ADI69504.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794309|emb|CBW36734.1| sensor histidine kinase [Streptococcus pneumoniae INV104]
 gi|301800147|emb|CBW32752.1| sensor histidine kinase [Streptococcus pneumoniae OXC141]
 gi|301801918|emb|CBW34642.1| sensor histidine kinase [Streptococcus pneumoniae INV200]
 gi|306409412|gb|ADM84839.1| Signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|306484248|gb|ADM91117.1| sensor protein YycG [Streptococcus pneumoniae 670-6B]
 gi|327389462|gb|EGE87807.1| sensory box protein [Streptococcus pneumoniae GA04375]
 gi|332074836|gb|EGI85308.1| sensory box protein [Streptococcus pneumoniae GA41301]
 gi|332201689|gb|EGJ15759.1| sensory box protein [Streptococcus pneumoniae GA47368]
          Length = 449

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 146/380 (38%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +      +  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +  +        + ++L   I  S +    S     E L+  V  +++I   
Sbjct: 135 --------LNRSILELLKIEENYELRDLITQSPELLLDSQDINGEYLNLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALCETVAP--DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI-ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                  K  E   + +++ D  + S     D  ++ Q+   IL+NA+ +S  G  + ++
Sbjct: 293 LNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVR 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                   I S+ ++G  IP+     +F+RF        R   G GLGLSI +  I  H 
Sbjct: 353 MKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|56750207|ref|YP_170908.1| phytochrome [Synechococcus elongatus PCC 6301]
 gi|56685166|dbj|BAD78388.1| phytochrome [Synechococcus elongatus PCC 6301]
          Length = 1165

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 109/703 (15%), Positives = 238/703 (33%), Gaps = 58/703 (8%)

Query: 117  NWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDC----AIKIEGRVSGSCAFLRILSLD 172
             WL         ++ ++L       DL A  Q        +K++GR+    A      L 
Sbjct: 490  EWLAIDKSELSQQSLDQLL----PLDLTAWNQGGVGNQGELKLKGRILQYEA----RPLV 541

Query: 173  GIYSEL--------AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            G  +E              +  +       F  L   +  +V   D  G  +  N ++  
Sbjct: 542  GPVAERGWVLVLHDVTAQRQVDQAMRERDQFFSLSLEMFCMV---DLRGRFIQVNPAFAA 598

Query: 225  NTETEGIVF-QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL--EHGNNKSYKIVR 281
                       +   E   L         I          + V  +  + G     +I  
Sbjct: 599  TLRYSTAELVGRPYLELVDLGDRSQIATTIRRLKAGLLIHDLVIRVWDKAGELHWLQISA 658

Query: 282  VLNSFGEA-GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQ-----NRYLQFHNRSF 335
             L        +A DV+++  + +Q+     +L  +    A                +   
Sbjct: 659  ALGDDRVIYCVARDVTEQRAIQEQILQ-QNLLLRMAGQTAKLGGWSVELPSREVIWSPET 717

Query: 336  VELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLP 395
              L           P  +E L     A +       +   +   S       H  +  L 
Sbjct: 718  FSLLGFTDE---DEPDLEEALSLYPPAERALVTKALEDCIQQGISFDFDVAVHNTSGFLL 774

Query: 396  NGQTLHVIVTSNPRGGTIWM---FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
            + +        +  G  + +   F++++ +   + +   L      T++ +++G      
Sbjct: 775  DARVT-GQAVRDETGAIVRISGAFQDVSDRKRAQREAQRLADRLRTTLESITDGFYTLDE 833

Query: 453  DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            + R    N         ++  ++    +  +  T      ES+   ++   I + +    
Sbjct: 834  NWRFSYLNQ-----EGAQQLGVNVEETLGQMVWTAFPGSYESELGHIYRQAIATGE---A 885

Query: 513  SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
            +   T         E    P  +   +  F +V++  + E+ L      L ++++    F
Sbjct: 886  AHFETYYEPFGRWFEVHAYPSEDGLAVY-FRDVSERRQTEQNLRITLRELERSNQELQEF 944

Query: 573  VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
                S++L+ PL  I  F+D L  ++  +L+ +   Y+  +++++  +  L+ D+L+ + 
Sbjct: 945  AFVASHDLQEPLRKIQAFSDRLI-ARTSNLDDESQDYLRRMASAAGRMQTLIIDLLNYSR 1003

Query: 633  VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
            V+   + L    + L+ +L++V   +   + + +    ++    L +   D  +  Q+F 
Sbjct: 1004 VNTRGLPL--QPLSLDQVLDDVLVDMEASLDQAS---AIVERQPLPTIQGDAGQFRQVFQ 1058

Query: 693  KILSNAMDFSSKGSTVILKAA---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             +LSNA+ F S  +  +++      + G     + +NG    E     +FN F     R 
Sbjct: 1059 NLLSNALKFQSADNQPLIQIYSELTEAGQLRLCIADNGIGFDEKYLDRIFNPFQRLHSRD 1118

Query: 750  QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               G G+GL+IV+  I  HG  ++  S     +      P  E
Sbjct: 1119 AYAGTGIGLAIVKKIIERHGATITAKSIPGQGSVFFITFPVTE 1161



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 74/243 (30%), Gaps = 37/243 (15%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           + E  + +QL+    I   +   +   D+   L F N +  E   ID + L+   S D+L
Sbjct: 449 TAEQQLKEQLSFNSTITDCMAEGLLAVDERGKLAFANPTAQEWLAIDKSELSQQ-SLDQL 507

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN----PRGG 411
           L            L+   W +                    G+ L              G
Sbjct: 508 L-----------PLDLTAWNQ--------GGVGNQGELKLKGRILQYEARPLVGPVAERG 548

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            + +  ++T Q  ++       +    ++    E   +    GR    NPAF +  +   
Sbjct: 549 WVLVLHDVTAQRQVDQAMRERDQFFSLSL----EMFCMVDLRGRFIQVNPAFAATLRYST 604

Query: 472 NRLSPGTHIR--------NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             L    ++          IA T  R        DL   +      E   LQ +  L  D
Sbjct: 605 AELVGRPYLELVDLGDRSQIATTIRRLKAGLLIHDLVIRVW-DKAGELHWLQISAALGDD 663

Query: 524 SVL 526
            V+
Sbjct: 664 RVI 666



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 79/244 (32%), Gaps = 23/244 (9%)

Query: 80  NCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQ 139
               ++W      PE    L    +      + LS            ++KA E   ++G 
Sbjct: 707 PSREVIWS-----PETFSLLGFTDEDEPDLEEALSLY---PPAERALVTKALEDCIQQGI 758

Query: 140 SFDLVAETQNDCAIKIEGRVSGSC------AFLRILSLDGIYSELAETTLKCKKLSNHIS 193
           SFD      N     ++ RV+G        A +RI    G + ++++     ++      
Sbjct: 759 SFDFDVAVHNTSGFLLDARVTGQAVRDETGAIVRI---SGAFQDVSDRKRAQREAQRLAD 815

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKL-FKEEIKKRM 252
             +   +S+    +  D+     + N    +  +  G+  ++ +G+     F    +  +
Sbjct: 816 RLRTTLESITDGFYTLDENWRFSYLNQ---EGAQQLGVNVEETLGQMVWTAFPGSYESEL 872

Query: 253 --ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYE 310
             I   A+         T      + +++    +  G A    DVS+       L  T  
Sbjct: 873 GHIYRQAIATGEAAHFETYYEPFGRWFEVHAYPSEDGLAVYFRDVSERRQTEQNLRITLR 932

Query: 311 ILHN 314
            L  
Sbjct: 933 ELER 936



 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 83/268 (30%), Gaps = 21/268 (7%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAI 237
           L E     ++L   +S    + D +   +   D+ G + +AN + ++    +     +  
Sbjct: 444 LNEVLTAEQQLKEQLSFNSTITDCMAEGLLAVDERGKLAFANPTAQEWLAIDKSELSQQS 503

Query: 238 GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSK 297
            +           +    +  E      +   E        +V  +   G   +  DV+ 
Sbjct: 504 LDQLLPLDLTAWNQGGVGNQGELKLKGRILQYEAR-----PLVGPVAERGWVLVLHDVTA 558

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND--EL 355
           +  V+  +    +          + D        N +F        A L   P  +  +L
Sbjct: 559 QRQVDQAMRERDQFFSLSLEMFCMVDLRGRFIQVNPAFAATLRYSTAELVGRPYLELVDL 618

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVY-KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW 414
            +  + A  +          + +  V+ K+ E H           L +            
Sbjct: 619 GDRSQIATTIRRLKAGLLIHDLVIRVWDKAGELH----------WLQISAALGDDRVIYC 668

Query: 415 MFENLTVQVDLETKY---NTLVKVQGET 439
           +  ++T Q  ++ +    N L+++ G+T
Sbjct: 669 VARDVTEQRAIQEQILQQNLLLRMAGQT 696



 Score = 39.5 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 28/215 (13%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
             +  E +    +       D ++EG+      G++  +NP  +                
Sbjct: 446 EVLTAEQQLKEQLSFNSTITDCMAEGLLAVDERGKLAFANPTAQEW-------------- 491

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
               A      ++     L    +T+++      QG L+L    +L+Y   PL       
Sbjct: 492 ---LAIDKSELSQQSLDQLLPLDLTAWNQGGVGNQGELKL-KGRILQYEARPLVGPVAER 547

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS-PLTNIIGFTDLLKTSKL 599
            +V V   V A+R + +      +   +       V  +LR   +     F   L+ S  
Sbjct: 548 GWVLVLHDVTAQRQVDQAMRERDQFFSLSLEMFCMV--DLRGRFIQVNPAFAATLRYSTA 605

Query: 600 GSLNSKQSQYVEYISAS-----STILLN--LVNDI 627
             +     + V+    S        L    L++D+
Sbjct: 606 ELVGRPYLELVDLGDRSQIATTIRRLKAGLLIHDL 640


>gi|86145971|ref|ZP_01064298.1| signal transduction histidine kinase [Vibrio sp. MED222]
 gi|85836176|gb|EAQ54307.1| signal transduction histidine kinase [Vibrio sp. MED222]
          Length = 574

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 7/239 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +   +A++ K+ F+  +S+ELR+PL   IG  D LK++    LN +Q   +  +
Sbjct: 195 ELVAARKDAERANKAKSEFLAMMSHELRTPLNATIGLIDTLKST---PLNDEQQSILLNM 251

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           S SS +LL +++D+LD + +++G   L        D +  V         +  + + + S
Sbjct: 252 STSSELLLAIISDVLDFSKIESGCFSLAPQWSNARDTVTFVLSEQKKIADDKGLSLTLTS 311

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D   G     D  RL QI   ++ NA+ F+  G  V +     +  F  SV++ G  I  
Sbjct: 312 DIPEGELHYIDPSRLAQILFNLIGNAIKFTEHGH-VHVSITYQHSSFRISVEDTGIGISS 370

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               S+F+ FV       RR  G GLGL+I +  + L  G +S+ S     +    R+P
Sbjct: 371 QQLSSLFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGRISVESEPGKGSKFEVRLP 429


>gi|86142593|ref|ZP_01061032.1| sensory transduction histidine kinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85830625|gb|EAQ49083.1| sensory transduction histidine kinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 791

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 130/798 (16%), Positives = 284/798 (35%), Gaps = 83/798 (10%)

Query: 46  RQRNS-------LAKKVNETYSFLSEICDQLSKYHSLLTENNCLT-----------IVWD 87
           R+R +       L KK +E Y+   E+     K  SL+ + N              +V D
Sbjct: 15  RERKARKMAESILEKKSSELYALSQELQKSNDKLQSLIYQKNTELQGVFENLVDAYVVID 74

Query: 88  GKDETPEII-GQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEG--QSFDLV 144
            +    ++    +      P  +   L     +       +++A + L K+G    F + 
Sbjct: 75  VEGHVLKMNDAAVALLEYDPTKEPVFLP--ALVLPEEQELVAEAFKGLLKKGSITDFKVS 132

Query: 145 AETQNDCAIKIEGRVS-----GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLF 199
             T+     ++    S      + A +      GI  ++ +   K + +       + + 
Sbjct: 133 IRTKTGAIRRVHINASTIVDENNKAIV----AQGIVRDITDEERKARIIDEQKRQLEFIV 188

Query: 200 DSLDFLVWHRDQAGDILWANISY-------------KKNTETEGIVFQKAIGESRKLFKE 246
           ++    +      G I   N S+             K          Q    E RK   +
Sbjct: 189 NNSPLGI-ALTTDGIIEKCNASFTRILGYPEDRIIGKDLKSITIAAEQSDYEEKRKDLHK 247

Query: 247 EIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQL- 305
                 +++     +  + ++T    N  + +         E     DV+KE+   +QL 
Sbjct: 248 GAFDSFVTTQKYITSSGQIITTKI--NVSAVRNHDNHTRTQEVITVEDVTKELLAREQLV 305

Query: 306 ---THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
                   ++  L   + + +++R +   N+ F +++ I        P + + L+   +A
Sbjct: 306 ESENRLSALISRLQSGVLLENEDRAIVLTNQMFCDMFGIP-----VKPEHMQGLDCSNAA 360

Query: 363 N------KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLH---VIVTSNPR-GGT 412
                  K PEQ   +  +     V +      D   L +G+      V + SN +  G 
Sbjct: 361 EENKHLFKNPEQFVSRITQI----VAERQLVTGDELELLDGRIFERDFVPIFSNGQYKGH 416

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +W + ++TV    +       +     I +++ G+     + RI L+N +F  +   + +
Sbjct: 417 LWSYTDVTVTRRYKNDLQQQKEKYSNIIANMNLGLLEVDTEDRILLANQSFSEISGYDSS 476

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT-LELLSDSVLEYSII 531
            L                            I  S++ E  +  G     L      + I 
Sbjct: 477 ELIGKKAAEVFMKPSDAVQVLKKNDLREKGISDSYEIEVFNKAGEKRNWLISGAPNFDIN 536

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                 ++   +++T     E         L K++     +   VS++L+SPL +I    
Sbjct: 537 G-KLVGSIGIHLDITTLKDLEAQKESLLNTLEKSNRELQEYAHVVSHDLKSPLRSINALA 595

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             +K   L  L+ +  +    +  +   +  L++ IL+ +++      +    + + +++
Sbjct: 596 SWIKEDNLEHLDEQSLENFSILENTLEKMEGLISGILNYSSIQ--RENIQDEEVSIKEVI 653

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVIL 710
            +++  +    H     I++I    L     DR R+ Q+F  ++SNA+ +S  +   + +
Sbjct: 654 EDIETLLYIPEH-----IELIVPDDLPIVNVDRTRIQQVFQNLISNAIRYSNKEKGLIRI 708

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGG 770
               +    +F+V++NG  I +     +F  F   +    +   G+GLSIV+  ++L+ G
Sbjct: 709 HYTEEATRHVFAVEDNGMGIDKIYHDKIFKIFQ--SLTDHKESTGIGLSIVKKIVDLYDG 766

Query: 771 HVSISSSDEGVTTINCRI 788
            V + S      T    +
Sbjct: 767 SVWLESELNEGCTFYFSL 784


>gi|67525287|ref|XP_660705.1| hypothetical protein AN3101.2 [Aspergillus nidulans FGSC A4]
 gi|40744496|gb|EAA63672.1| hypothetical protein AN3101.2 [Aspergillus nidulans FGSC A4]
 gi|259485951|tpe|CBF83407.1| TPA: Histidine kinase D5 [Source:UniProtKB/TrEMBL;Acc:Q6WJ27]
            [Aspergillus nidulans FGSC A4]
          Length = 1879

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 126/294 (42%), Gaps = 15/294 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            T      K       L+    +E S      A    T  ++ D    ER L +  + L  
Sbjct: 1139 TEIRLRSKGGDFRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNN 1198

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              E K  F  ++S+E+R+PL  I+G    +  +   SL++ Q + ++ I  SST L  LV
Sbjct: 1199 QMESKTKFFSNMSHEIRTPLNGILGTIPFILDT---SLDTDQRRMLDTIQNSSTNLRELV 1255

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
            ++ILD++ V+AG M L  S   +  ++ +V  +++++  +  + +  + D       + D
Sbjct: 1256 DNILDVSRVEAGKMSLVGSWFHVRSVIEDVIDTVSSRAIDKGLEMNYLMDVDVPPMVIGD 1315

Query: 684  RQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--------FSVKNNGSSIPEDM 734
            R R+ QI   ++ NA+ F+++G   +      D             F V + G       
Sbjct: 1316 RFRIRQILINLVGNAVKFTAQGEIHIRCSIYHDPNAIHKPTEILMNFDVVDTGKGFSAQD 1375

Query: 735  CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             + +  RF         Q  G GLGL + +  + +HGG ++ SS +      + 
Sbjct: 1376 AERLMQRFSQLGTNASQQNAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGAKFSF 1429


>gi|313606642|gb|EFR83405.1| heme sensor protein HssS [Listeria monocytogenes FSL F2-208]
          Length = 459

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 129/282 (45%), Gaps = 15/282 (5%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---------ALTEKNEALRKADEIKN 570
           L+S   +   ++ L NA   +   N   S+   R         +  +    L K++  + 
Sbjct: 181 LISGRYIVNPVVKLTNATKKIRKGNYDVSLEVRRKDEIGQLADSFAKMASELEKSEAARQ 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            FV +VS+EL+SPLT++ GF  LL +  L     +Q++Y+  +S  +T L +L   +L L
Sbjct: 241 EFVANVSHELQSPLTSMQGFARLLGSGTLTG--KEQAEYLTVLSEETTRLSSLTKQLLTL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A++D          + L +   ++ Q       E  + I +  D    ++  D + L Q+
Sbjct: 299 ASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINL--DLAEVNYTGDAELLYQV 356

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           +S +L+NA+ F+  G  + +    +  +    V+++G  I +     +F RF        
Sbjct: 357 WSNLLTNAIKFTPPGGNIQIHLYEEGTNVFVEVRDSGVGISKSDMAKIFERFYKANQSRT 416

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           R     GLGLSI +  I LH G +++ SS E  TT   ++P 
Sbjct: 417 REEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458


>gi|284054061|ref|ZP_06384271.1| Cache sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 256

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 12/225 (5%)

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PL  IIG++++L               +E I  +   LL L+NDILD++ ++AG 
Sbjct: 1   HELRTPLNAIIGYSEILLEEAEELGYEDIVPDLERIYTAGKNLLTLINDILDISKIEAGR 60

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           M L      ++ LL  V  +    M +NN  + V     +G   AD  ++ QI   +LSN
Sbjct: 61  MDLFVEAFDVSGLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSN 120

Query: 698 AMDFSSKGSTVILKAAR--------DNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           A  F++ G  + ++ +R        ++G  + F V + G  +  +  + +F  F      
Sbjct: 121 AAKFTTDG-KIKIEVSRVSSLPYSQESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDAS 179

Query: 749 GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             RR  G GLGL+I + F  + GG++ + S+    +T    IP++
Sbjct: 180 TTRRYGGTGLGLAISDRFCQMMGGNIQVQSTLGEGSTFKVVIPTR 224


>gi|255280004|ref|ZP_05344559.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255269777|gb|EET62982.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 380

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 116/253 (45%), Gaps = 3/253 (1%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T+ T               +  E L   + +K  FV +VS+E+++P+  I  + +LL+T+
Sbjct: 105 TIHTQDKWDYLDVMIVDFNKMVEELGSIETLKTDFVSNVSHEMKTPIAIIKNYAELLQTA 164

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
            +     ++ +Y E I  +S  L NL+++IL L  ++   +  +  T  +   L E    
Sbjct: 165 SV--TEEQRREYAENIEKASMRLSNLISNILKLNKLENQTIVPDPETYDVCRQLCECILQ 222

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                 +  + ++   +  +    AD   L  +++ +LSNA+ F+ KG  V +K   D  
Sbjct: 223 FEESWDDKELELQTEIE-DIAMVEADESLLELVWNNLLSNAIKFTEKGGMVTVKQTSDEK 281

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
               SV + G  +  D  K +F++F        + G G+GL++V+  + L  G++ + S 
Sbjct: 282 TVTVSVTDTGCGMAPDSVKHIFDKFYQGDTSHSKEGNGIGLALVKRVLELSDGNIQVFSR 341

Query: 778 DEGVTTINCRIPS 790
           +   +T    +P+
Sbjct: 342 EGEGSTFVVTLPA 354


>gi|209809753|ref|YP_002265292.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208011316|emb|CAQ81766.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 578

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 119/246 (48%), Gaps = 7/246 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +      ++ +    +++    FV  +++ELR+PL  ++G  +L++ +   ++   Q 
Sbjct: 193 RQQLLENTIKEKQRAENSEQATRDFVAMINHELRTPLNGLLGSAELMEDT---NITQYQQ 249

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I  +  +L  ++ND+LD + ++AG+++L+ +      L+  ++Q    ++ E  +
Sbjct: 250 TLLMTIHQAGEMLRVIINDLLDFSKMNAGMLQLSITQFSPQILIQTIEQMFLHQIEETRL 309

Query: 668 RIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
              V  +  L      D  R+ QI   ++ NA+ F+ +G  +   A+  +    F+V ++
Sbjct: 310 EFVVGIENTLPDGLSGDIDRIQQILVNLIGNAIKFTKEGE-IRFSASWKDNVLCFTVSDS 368

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP D   ++F+ F    +  QR   G GLGLSI +S I+   G +++ S     +  
Sbjct: 369 GCGIPLDKQSTLFDPFTQVDNSSQRQFEGTGLGLSICKSLIDKMEGTLTLESELGKGSVF 428

Query: 785 NCRIPS 790
           +  IP 
Sbjct: 429 SVEIPL 434


>gi|89067357|ref|ZP_01154870.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanicola
           granulosus HTCC2516]
 gi|89046926|gb|EAR52980.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanicola
           granulosus HTCC2516]
          Length = 691

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 158/393 (40%), Gaps = 37/393 (9%)

Query: 425 LETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           L+ +     +     I+ L  G A++  D R+   N  F  ++    + + PG    +I 
Sbjct: 297 LDRQRQVAQRRMVSAIEALDGGFAMYDADDRLIACNSGFLDMYDRCRDIIRPGVRFEDIV 356

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTF 542
                     D      A +    +  ++    LE  L +      S     +   +   
Sbjct: 357 RYGISRQQYPDAIGREQAFLRERMELHRTGNCDLEQKLSNGRCYHVSERSSDDGLLVGLR 416

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL--------- 593
           V++T+       L    EA   AD+ K +F+  +S+ELR+PLT I+G + L         
Sbjct: 417 VDITE-------LKAAQEAAEAADQAKTNFMNVLSHELRTPLTVILGHSRLGASFSKMPK 469

Query: 594 -------LKTSKLGSLNSKQS-------QYVEYISASSTILLNLVNDILDLATVDAGIMK 639
                  ++ +++  L  + +       + +  I  S T LL+L+ND+LD + + +G + 
Sbjct: 470 AQKVLAAIQRTEVDGLAEEVASLYDDLGERMRKIDQSGTYLLSLINDMLDFSKLSSGSLS 529

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           ++       +L+  V   +A    +  + +   +  +    +AD +R  QI   ++ NA+
Sbjct: 530 IDPDEFDAANLVELVTAQLAPMAEQKGLALT--ASTEPARVLADSRRCQQILINLIGNAL 587

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLG 757
            FS+ G TV + A         +V + G  IP+D    +F  F        RR  G GLG
Sbjct: 588 KFSTCG-TVSVTAEMRGRMLDIAVSDEGPGIPDDELSRIFEPFHQVDSTATRRAGGTGLG 646

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           L+I      + GG +S +S     +     +P 
Sbjct: 647 LAIARQLAEMQGGALSATSVYGQGSRFVLSLPL 679


>gi|320173479|gb|EFW48677.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella dysenteriae CDC 74-1112]
          Length = 1197

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|283850550|ref|ZP_06367838.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574121|gb|EFC22093.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 536

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 13/247 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  E    A+  K+ F+ ++S+E+R+PL  I+G   LL+T+     + +Q +Y+   
Sbjct: 145 QLQKAVEEAEAANRAKSDFLANMSHEIRTPLNGILGMLQLLQTT---DADPEQREYITNA 201

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             SS  L  L+ DILDL+ ++AG + +  +          V ++         + +  + 
Sbjct: 202 IKSSQRLTRLLADILDLSRIEAGRLPIVETAFEFKSQQEAVIETFDQAARGKGLALDFLV 261

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNG--DFIFSVKNN 726
           D ++  + + D  RL QI   ++ NA+ FS+ G  V + A     RD+G    +F+V + 
Sbjct: 262 DDRMPAALIGDETRLRQILFNLVGNAVKFSAYG-RVAVTATPMHLRDDGSLRVLFTVTDT 320

Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP+ +   +F  F     A+  + +G GLGL+IV   ++L GG + I S++   T I
Sbjct: 321 GIGIPDHLLADIFEPFSQVEGAYSRRFQGAGLGLAIVRRLVSLLGGELDIDSTEGRGTAI 380

Query: 785 NCRIPSK 791
              +P +
Sbjct: 381 YLTLPFR 387


>gi|254432221|ref|ZP_05045924.1| drug sensory protein A [Cyanobium sp. PCC 7001]
 gi|197626674|gb|EDY39233.1| drug sensory protein A [Cyanobium sp. PCC 7001]
          Length = 680

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 158/396 (39%), Gaps = 51/396 (12%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +   +G I L+NP  R L++ E  +L     I  +   
Sbjct: 275 EELTAAQVKQESLIATMADGAVLLDANGAIVLANPTARRLFRWEGRKLEGQELITELPER 334

Query: 487 C-----SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                 S   N   G    A +  +  +  ++L+  L+ + D+          + +++  
Sbjct: 335 LAIELHSALENVMIGQQEAADVRCNVGEPPRTLRIVLQPVRDA----------SGESLKG 384

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L       
Sbjct: 385 IAMTVQDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDLGDQL 434

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              ++ +++   +A +  L  LVND+LDL+ +++     ++  + +   + +  ++    
Sbjct: 435 SEEEKKEFLGIANAETDRLTRLVNDVLDLSRLESDR-AWSFEPLEVGPAIEQTLRTYRLN 493

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---- 717
             +  +++   S+  L   +A+   LLQ+F  ++ NA+ F+++G  ++L+A         
Sbjct: 494 AEDKGVKLLFESEEPLPRVLANWDLLLQVFDNLVGNALKFTAEGGQIVLRAYPWPDRCLI 553

Query: 718 --------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGL 756
                                    + ++G  I E     +F RF    +      G GL
Sbjct: 554 DPDALPSGDLPHCDLTSPLPRLRIEIGDSGCGISEADQDRIFERFFRVENAVHFEAGTGL 613

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           GLSIV   ++ HG  + + S     T+    +P ++
Sbjct: 614 GLSIVRGILDKHGTQIRMVSEPGIGTSFWFELPLED 649



 Score = 39.2 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 15/141 (10%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
             +         ++  +     + D N  +   N +   L+  +   L       EL E 
Sbjct: 275 EELTAAQVKQESLIATMADGAVLLDANGAIVLANPTARRLFRWEGRKLEGQELITELPER 334

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GT 412
           L               +  +    ++++   +    P  +TL +++            G 
Sbjct: 335 LAIEL-------HSALENVMIGQQEAADVRCNVGEPP--RTLRIVLQPVRDASGESLKGI 385

Query: 413 IWMFENLTVQVDLETKYNTLV 433
               ++LT +V+L    +  +
Sbjct: 386 AMTVQDLTREVELNAAQSRFI 406


>gi|188582812|ref|YP_001926257.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           populi BJ001]
 gi|179346310|gb|ACB81722.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           populi BJ001]
          Length = 1120

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 116/237 (48%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L +  E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     S+   +   +  I 
Sbjct: 644 LQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDP--SIPEPRRNGIRVIR 701

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++ + + I L D L ++   +  +     ++ +    
Sbjct: 702 RSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQAEGAGLKFRFTRP 761

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL QI   +LSNA+ F+++G  V L+        +F++++ G  IPE 
Sbjct: 762 EILPAVVATDEKRLRQILLNLLSNAIKFTAEGE-VALEMTYRGQVAVFTIRDTGLGIPEA 820

Query: 734 MCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F   +        G GLGL+I      + GG +++ S     T+   R+
Sbjct: 821 DLGRIFEPFERGSMPAARAAPGTGLGLTIAGLLAQVMGGEITVESRVGQGTSFRVRL 877


>gi|118479812|ref|YP_896963.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196044095|ref|ZP_03111332.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|118419037|gb|ABK87456.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196025431|gb|EDX64101.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 484

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 125/271 (46%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|67922197|ref|ZP_00515711.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67855900|gb|EAM51145.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 796

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 137/254 (53%), Gaps = 16/254 (6%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            +    L EK++    A++ K +F+ ++S+E+R+PL  I+GF+DLL    +   N     
Sbjct: 503 NQQNIQLQEKSKQAEAANKAKTNFLANMSHEIRTPLNAILGFSDLLSQKIIDPEN---VN 559

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ I  SS  LL L+NDI +L  +++GI+K+   T+ L +++ ++    + K ++ NI+
Sbjct: 560 HLQSIIFSSNNLLALINDIFELIRLESGIVKVESETVNLTEIIRQIYYKFSEKANQKNIK 619

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI----------LKAARDNG 717
           + V  +  +   +  D+ +L QI + +LSNA+ F+  GS  +          LK  ++N 
Sbjct: 620 LIVNLNKNIPDILEFDKLKLYQIINNLLSNAIKFTKLGSVKVDVWANYFQSDLKTRQENC 679

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             +  +K+ G  I ++  K +F+RF   +     +  G+GLGL++ +  I L  G++ + 
Sbjct: 680 SIVIRIKDTGIGISQEKQKIIFDRFTQVSQETNREYEGIGLGLTLTQKMIQLLEGNLKLE 739

Query: 776 SSDEGVTTINCRIP 789
           S  E  TTI   +P
Sbjct: 740 SELEKGTTITVTLP 753


>gi|310780117|ref|YP_003968449.1| histidine kinase [Ilyobacter polytropus DSM 2926]
 gi|309749440|gb|ADO84101.1| histidine kinase [Ilyobacter polytropus DSM 2926]
          Length = 630

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 6/238 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A+  KN F+  +S+E+R+PLT IIG++ +LK S+L     ++   +E I
Sbjct: 150 QLKSAKEHAEAANRSKNEFLAKISHEMRTPLTPIIGYSRMLKKSELSDYTKEK---LETI 206

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S   LLN  N++LD + ++AG ++LN+    +     E+      K  E NI+ ++  
Sbjct: 207 HNSGVKLLNFTNELLDFSKIEAGTVELNFEPFGIKKFFKEIYNEHCEKAEEKNIQFQIEL 266

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                   +D+ +L ++   ++ NA+ ++ KGS V+      +    F V ++G  I + 
Sbjct: 267 PQNDIIIYSDKMKLYEVVKNLVHNAIKYTKKGS-VLCTVEIRDSLLCFDVYDSGIGISDK 325

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F  F       Q  G GLGLSI +  I +  G + + S     TT N  IP +
Sbjct: 326 NINYIFESFGQI--NKQSAGAGLGLSITKRLIEILKGDIKVESKLGIGTTFNVSIPIE 381


>gi|258627290|ref|ZP_05722076.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM603]
 gi|258580473|gb|EEW05436.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM603]
          Length = 769

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 12/292 (4%)

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
           A I T   DE   L  + E +  S+ E         +  L      +       + ++N+
Sbjct: 41  AMINTERKDEIGRLAVSFERMQRSIRE---------KISLIKSQNKELENNLLIIRKQND 91

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
            L+ A+++K+ F+   S+ELR+PL  +IG  + L +   G L +     ++ I +S   L
Sbjct: 92  ELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIIISSGQRL 151

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
             LV+D+LD   +  G + +    + L+     V +     + +  +RI      +    
Sbjct: 152 ATLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSNHLLGKKTLRIINQVSEQPVWV 211

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            AD QRL Q+   ++ NA+ ++S+G  +++ A   +      V + G  IP +  + +F 
Sbjct: 212 SADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQLEQIFE 270

Query: 741 RFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +         R+G GLGLSI    I L  G + +SS     TT +  +P 
Sbjct: 271 PLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMVGTTFSFTLPL 322


>gi|228917320|ref|ZP_04080874.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842310|gb|EEM87404.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 484

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 125/271 (46%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|170751881|ref|YP_001758141.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658403|gb|ACB27458.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1124

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 123/237 (51%), Gaps = 6/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L E  E    A++ K+ +V  +S+ELR+PL+ ++G+  LL++    ++ + +   +  I 
Sbjct: 658 LQEAKERAEAANQAKSRYVVGISHELRTPLSTVLGYAQLLESDP--AIPAHRVNGLRVIR 715

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  L  L++ +LD++ ++AG ++++   + L D L+++   +  +  E  +  +    
Sbjct: 716 RSAQHLSGLIDGLLDISRMEAGRLQIHRDEVRLTDFLDQLVDMVRLQAREAGLEFRFSRP 775

Query: 675 GKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             L + VA D +RL Q+   +LSNA+ F+  G TV L  +  +   +F++++ G  IPE 
Sbjct: 776 EILPAVVATDEKRLRQVLLNLLSNAIKFTEAG-TVSLDLSYRSQIAVFTIRDTGPGIPEA 834

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F   +        G GLGL+I      L GG ++++++  G T    R+
Sbjct: 835 DLARIFEPFERGSTPAARSTPGTGLGLTIANLLAQLLGGEITVTAAPGGGTQARLRL 891


>gi|108808871|ref|YP_652787.1| hybrid sensory histidine kinase BarA [Yersinia pestis Antiqua]
 gi|167398949|ref|ZP_02304473.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|108780784|gb|ABG14842.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Antiqua]
 gi|167051453|gb|EDR62861.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
          Length = 927

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|312959863|ref|ZP_07774378.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
 gi|311285810|gb|EFQ64376.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
          Length = 633

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 11/252 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T+++      Q
Sbjct: 243 EQQQAMAQLIQTREEAERANNAKSDFLAMMSHELRTPMNGVLGMLQLLETTEMTEE---Q 299

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    S S+  LL ++NDILD + ++   ++L +    L DL+N   Q+      +  
Sbjct: 300 TEYAALASESTEHLLKVINDILDFSRIERAALELEHIPFNLADLINSCAQAFQHSAQQRG 359

Query: 667 IRIKVISDGKLGS--FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI--- 720
           + + +     L +     D  R+ QI   ++ NA+ F+  G+  V       + + +   
Sbjct: 360 LTLTLGVAQGLEALKVQGDPTRIRQILVNLIGNALKFTEHGTVSVESDWQPLDHELVWFT 419

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V+++G  I  +  + +F+ F         +  G GLGL I  +     GG +   S +
Sbjct: 420 CIVRDSGIGISTERLERMFDAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESEE 479

Query: 779 EGVTTINCRIPS 790
              +     IP 
Sbjct: 480 GLGSVFTLEIPL 491


>gi|313111213|ref|ZP_07797033.1| putative sensor histidine kinase protein [Pseudomonas aeruginosa
           39016]
 gi|310883535|gb|EFQ42129.1| putative sensor histidine kinase protein [Pseudomonas aeruginosa
           39016]
          Length = 864

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 122/726 (16%), Positives = 246/726 (33%), Gaps = 83/726 (11%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG-----RVSGSCAFLRILSLDGIYSELA 179
           + L +   KL++  Q+     E+    + +  G      V       R  +L     EL 
Sbjct: 13  VALEEERHKLQRINQALIGRIESSAAQSDEAYGAFQYSVVLAEQVRERTDALSQTMLELK 72

Query: 180 E----TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
                 +    +            +S+       D    I+  N  ++       I  + 
Sbjct: 73  ASNQLLSDARLRAETAHQHLLDAIESISDAFVLFDPQQRIVLFNERFR----ALWIDSRA 128

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAID 294
            IG   +  +     R       E+   +  +     + +  ++  R     G A +  D
Sbjct: 129 RIGPGMRRAELHRLARSGGLIVEEQRGGDQQTLYRLRDERWLRMSERPTRDGGLAVLYSD 188

Query: 295 VSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           V++         E  +  +       + NL+  +A+   +  L+  NR F+EL  +  A 
Sbjct: 189 VTEIKLSETARREQALAQKSHLLQRAVDNLSQGVAMVGADGVLELWNRRFLELCGL--AP 246

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +A + +  E++         P   +            + S        L +G+ L +   
Sbjct: 247 IAGHRAFAEVMAESELPLLTPCSQD-----------SQGSPLSAREQRLFDGRVLEIRTH 295

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P GG +  F ++T +           +      D +   +A    +   + +N  +  
Sbjct: 296 ALPTGGFVNTFTDITERYRHAEALRASERWIRLITDQVPALIAYLSDELVYEFTNKVYEE 355

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            ++     +  G  +R++         E       A    +F+    +L G    +  S 
Sbjct: 356 WYRWPSGSML-GRCLRDVHGAEHCRRLEPYFERALAGESVTFEIAETALSGEERYMQRSY 414

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------------- 565
           +         A   +   ++T+  R   AL +  + L +                     
Sbjct: 415 VPNRQADGRVAGLFVLIRDITERRRTAEALHQAYQNLEQRVRERTAELTTLNDQFKREIH 474

Query: 566 -------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                              +  K  F+  VS++L  PL     FT  L+     + +++ 
Sbjct: 475 ERSQVEARLREAKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALQERGSAAPDNEA 534

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  IS S   + NL+  ++D++ +DAG++  + +   L +LL  +            
Sbjct: 535 --LVNNISHSLEDVENLLGTLVDISKLDAGVITPDIAPFELGELLGNLAAEYRQVAASEG 592

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+  ++ G L    +D+Q L +I   +LSNA+ ++ +G  V+L   R        V + 
Sbjct: 593 LRLDFVACGAL--VRSDQQLLARILRNLLSNAIRYTPRG-RVLLGCRRHRQRLSIEVWDT 649

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F     +   Q RG+GLGL+IV+    + G  V + S     +  
Sbjct: 650 GVGIAADKLGEIFQEFKRGESQRCHQDRGLGLGLAIVDKIARMLGHRVRVGSLPGKGSCF 709

Query: 785 NCRIPS 790
              +P 
Sbjct: 710 AIEVPL 715


>gi|300936942|ref|ZP_07151826.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300457948|gb|EFK21441.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
          Length = 1197

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYQVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSTGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|260773473|ref|ZP_05882389.1| aerobic respiration control sensor protein ArcB [Vibrio
           metschnikovii CIP 69.14]
 gi|260612612|gb|EEX37815.1| aerobic respiration control sensor protein ArcB [Vibrio
           metschnikovii CIP 69.14]
          Length = 783

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE    T +      ID   + +      G     N A   L    E++L   T  
Sbjct: 144 EKTQLELAERTAL--LRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESQLVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D          +++   +   G          E   +P  + +   
Sbjct: 202 DVYRKEIAQSIVETDQQVFKNNQAITYEQWLEYPDGRKHF-----FELRKVPFYSKEGRH 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++  
Sbjct: 257 LGLVGFGRDITER--KRHQESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +Q ++++ I  S+  L ++ NDI+D+   D   ++L  + +   + + E++   A 
Sbjct: 313 -LTDEQRKHMQTIQVSAITLGHIFNDIIDMDKFDRRKLELLPAPLNFVEFVAELESLSAL 371

Query: 661 KMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTV-ILKAARDNG- 717
              +  +R  +    +L +++  D  RL Q+   ++SNAM F+ +G  V  + A  + G 
Sbjct: 372 MAEQKGLRFDLERLTELPTWIEVDATRLRQVLWNLMSNAMKFTKEGGVVMSVSADINPGS 431

Query: 718 -DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
            D    +++ G  IPE     +F  +             G G+GL++    INL  G + 
Sbjct: 432 ADITMEIEDTGIGIPEHELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINLMAGDIE 491

Query: 774 ISSSDEGVTTINCRI 788
           +SS +   +T    I
Sbjct: 492 VSSEEGFGSTFTVTI 506



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 66/166 (39%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMVDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVS 267
           +    N + ++ T   G    + +G +   ++++EI + ++ +        +    E   
Sbjct: 176 EFSGCNRAMEELT---GKRESQLVGLTPWDVYRKEIAQSIVETDQQVFKNNQAITYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRKHFFELRKVPFYSKEGRHLGLVGFGRDITERKRHQESLEK 278


>gi|238758290|ref|ZP_04619468.1| Aerobic respiration control sensor protein arcB [Yersinia aldovae
           ATCC 35236]
 gi|238703413|gb|EEP95952.1| Aerobic respiration control sensor protein arcB [Yersinia aldovae
           ATCC 35236]
          Length = 778

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 146/371 (39%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLIGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      
Sbjct: 313 LDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    + D  RL QI   ++ NA+ F+ +G  V+     D     
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQGKIVVRVHREDTDRLT 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPE+    +F  +     H G +   G G+GL++ +      GG +++ S 
Sbjct: 433 FEVEDSGMGIPEEEQDKIFAMYYQVKDHNGGQPATGTGIGLAVSKRLAQSMGGDITVQSR 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGAGSCFTLTI 503



 Score = 41.1 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +    
Sbjct: 130 LQVVDKLKEEMGHREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLI- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|229839016|ref|ZP_04459175.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229695382|gb|EEO85429.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262363147|gb|ACY59868.1| two-component regulatory protein [Yersinia pestis D106004]
          Length = 927

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|223046625|gb|ACM79363.1| GAF sensor hybrid histidine kinase [Arthrospira platensis FACHB869]
          Length = 785

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 119/268 (44%), Gaps = 12/268 (4%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           AQ +       +   A+R L +K E L      K+ F+ ++S+ELR+PL +++  +  L 
Sbjct: 83  AQKVEVERKNQEVESAKRELEDKAEQLALTSRYKSEFLANMSHELRTPLNSLLILSRQLG 142

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +  G+L+ +Q Q+ + I  + + LL L+N+ILDLA +++G M +N + +   D+   V+
Sbjct: 143 ENSAGNLDERQVQFAQTIHQAGSDLLTLINEILDLAKIESGTMHVNPAELPFRDIKEYVE 202

Query: 656 QSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTV------ 708
           +S      E  +  +V     +  +   D  RL QI   +LSNA  F+  G         
Sbjct: 203 RSFEHVADERGLWFRVEIAADVPETIETDEMRLKQILRNLLSNAFKFTEHGGVTMRMRPA 262

Query: 709 ---ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVES 763
                           +V++ G  I  +  + +F  F         +  G GLGLSI   
Sbjct: 263 TDPTRTTLLGADAVAIAVEDTGIGISPEQQRLIFEAFQQGDGGTARRYGGTGLGLSISRE 322

Query: 764 FINLHGGHVSISSSDEGVTTINCRIPSK 791
              L GG V + S     +T    +P +
Sbjct: 323 LARLLGGWVEVGSEMGKGSTFTLYLPRR 350


>gi|197337907|ref|YP_002157653.1| sensor protein LuxQ [Vibrio fischeri MJ11]
 gi|197315159|gb|ACH64608.1| sensor protein LuxQ [Vibrio fischeri MJ11]
          Length = 575

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 7/236 (2%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                 ++     FV  +++ELR+PL  ++G  +L++ ++   +   Q++ +E I  S  
Sbjct: 203 KRRAENSERATRDFVAMINHELRTPLNGLLGSAELMEDTQ---ITDYQNKLLETIHQSGQ 259

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
           +L  ++ND+LD + + AG+++L  +      L+  ++Q    +M E  +R  +     L 
Sbjct: 260 MLRIIINDLLDFSKMSAGMLELKVANFKPCILVKTIEQIFTPQMAEKCLRFDIHIADNLP 319

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            S + D  R+ QI   ++ NA  F+  G  + LK        +  V + G  IP+D  K 
Sbjct: 320 QSLMGDIDRVQQILVNLVGNAFKFTKSGH-ISLKVGWQENALVLIVSDTGCGIPQDKQKL 378

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +F  F    +  QR   G GLGLSI +  ++   G +S  S     +    ++P +
Sbjct: 379 LFEPFTQVDNSSQRQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEFQVKLPLE 434


>gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
 gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
          Length = 1342

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 2/225 (0%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            ++ K  F  ++S+E R+PLT I+   ++L       +       +  I  ++  +  L+ 
Sbjct: 820  NQSKLRFFTNISHEFRTPLTLIVSQLEMLMER--NDIQPLVYNKLVNIHRNTLRMKRLIT 877

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            ++LD    + G  K  YS   +   L+E+  S         I ++ ++  +      D  
Sbjct: 878  ELLDFRKQEQGFEKFKYSKQDIYAFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFDVV 937

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            +L ++   +LSNA  ++S G TV L         +  + + G  I E     +F+RF   
Sbjct: 938  QLEKVIYNLLSNAFKYTSLGGTVSLSVQEYENSVVILISDTGIGIAEKSLDKIFDRFYQV 997

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                 ++G G+GL++ +S I  H G +S+ S +   TT    +P 
Sbjct: 998  DSTDNQKGTGIGLALAKSIIEAHKGKISVRSMEGKGTTFVVELPL 1042


>gi|196035779|ref|ZP_03103182.1| sensor histidine kinase [Bacillus cereus W]
 gi|195991746|gb|EDX55711.1| sensor histidine kinase [Bacillus cereus W]
          Length = 461

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ QY+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TSPEQRLQYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSQIHISVIEENKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITMEDEGEGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFTISLPS 455


>gi|167423462|ref|ZP_02315215.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167057632|gb|EDR67378.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
          Length = 936

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|166214085|ref|ZP_02240120.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166204716|gb|EDR49196.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. B42003004]
          Length = 939

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|162418760|ref|YP_001605841.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Angola]
 gi|162351575|gb|ABX85523.1| sensor kinase protein RcsC [Yersinia pestis Angola]
          Length = 949

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 353 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 408

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 409 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 449

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 450 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 506

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 507 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 566

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 567 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 625

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 626 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 685

Query: 784 INCRIPS 790
              RIP 
Sbjct: 686 FAIRIPL 692


>gi|22124721|ref|NP_668144.1| hybrid sensory histidine kinase BarA [Yersinia pestis KIM 10]
 gi|108810875|ref|YP_646642.1| hybrid sensory histidine kinase BarA [Yersinia pestis Nepal516]
 gi|229901084|ref|ZP_04516207.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Nepal516]
 gi|270489264|ref|ZP_06206338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|21957537|gb|AAM84395.1|AE013683_8 sensor-regulator, activates OmpR by phophorylation [Yersinia pestis
           KIM 10]
 gi|108774523|gb|ABG17042.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Nepal516]
 gi|229681809|gb|EEO77902.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis Nepal516]
 gi|270337768|gb|EFA48545.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
          Length = 933

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|95929116|ref|ZP_01311861.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135017|gb|EAT16671.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 595

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 150/370 (40%), Gaps = 32/370 (8%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +   + Q   +  + EGV        +   NPA   L + + + +  G  ++ +     
Sbjct: 248 IDKQRREQDAVLSSMVEGVIAIDSRQNVLRMNPAAAHLLEIDPDNVV-GRPVQEVVRKA- 305

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL----EYSIIPLPNAQTMLTFVN 544
                    +L + I  + D ER   +  L    +  L      +++     +++   V 
Sbjct: 306 ---------ELLSFITAAMDSERTIEKDVLLFRGEEELCLQAHGTMLRGMGEESIGALVV 356

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             D  R  R            + ++  FV +VS+EL++P+T I GF + L    L S + 
Sbjct: 357 FNDLTRQRRL-----------ETMRRDFVANVSHELKTPITAIKGFVETLLDGALDSRDE 405

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAG--IMKLNYSTIVLNDLLNEVKQSIATKM 662
            + Q+++ +      L  ++ D++ L+ ++ G    + +     L ++++E         
Sbjct: 406 SE-QFLKIVERQVERLSVIIEDLMSLSRIEQGEEHERFDLEPEKLAEVISESVNDCTVLA 464

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               I +K   D  L S + +   L Q  + +L NA+ +SS  STV ++   ++G  I  
Sbjct: 465 EGLGITLKQELDQDLTSPL-NAPLLEQALTNLLENAIKYSSTDSTVTIRCYEEDGRAIVR 523

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +    +F RF         Q  G GLGL+IV+  + +H G V + S+   
Sbjct: 524 VCDEGCGIEAEHLPRLFERFYRVDKARSRQAGGSGLGLAIVKHIVQIHHGRVEVESTPGK 583

Query: 781 VTTINCRIPS 790
            +     +P 
Sbjct: 584 GSDFIISLPL 593



 Score = 42.6 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 6/135 (4%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            +  T++ Q      +L ++   +   D  + +   N +   L EID   +   P   E+
Sbjct: 243 ERISTIDKQRREQDAVLSSMVEGVIAIDSRQNVLRMNPAAAHLLEIDPDNVVGRP-VQEV 301

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
           +      + +   ++ +   E    +++  E      H   G  L  +   +   G + +
Sbjct: 302 VRKAELLSFITAAMDSERTIEKDVLLFRGEEELCLQAH---GTMLRGMGEES--IGALVV 356

Query: 416 FENLTVQVDLETKYN 430
           F +LT Q  LET   
Sbjct: 357 FNDLTRQRRLETMRR 371


>gi|145600234|ref|YP_001164310.1| hybrid sensory histidine kinase BarA [Yersinia pestis Pestoides F]
 gi|153997576|ref|ZP_02022676.1| two-component regulatory protein [Yersinia pestis CA88-4125]
 gi|165936705|ref|ZP_02225272.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010041|ref|ZP_02230939.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|167420808|ref|ZP_02312561.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167469899|ref|ZP_02334603.1| hybrid sensory histidine kinase BarA [Yersinia pestis FV-1]
 gi|218930398|ref|YP_002348273.1| hybrid sensory histidine kinase BarA [Yersinia pestis CO92]
 gi|229899582|ref|ZP_04514723.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. India
           195]
 gi|294505087|ref|YP_003569149.1| two-component regulatory protein [Yersinia pestis Z176003]
 gi|115349009|emb|CAL21970.1| two-component regulatory protein [Yersinia pestis CO92]
 gi|145211930|gb|ABP41337.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Pestoides F]
 gi|149289213|gb|EDM39293.1| two-component regulatory protein [Yersinia pestis CA88-4125]
 gi|165915354|gb|EDR33964.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165990948|gb|EDR43249.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166961614|gb|EDR57635.1| signal transduction histidine-protein kinase BarA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|229687074|gb|EEO79149.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Orientalis str. India
           195]
 gi|262367077|gb|ACY63634.1| two-component regulatory protein [Yersinia pestis D182038]
 gi|294355546|gb|ADE65887.1| two-component regulatory protein [Yersinia pestis Z176003]
 gi|320016581|gb|ADW00153.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 930

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L + L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|228954946|ref|ZP_04116963.1| hypothetical protein bthur0006_43110 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228804673|gb|EEM51275.1| hypothetical protein bthur0006_43110 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 1018

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 119/267 (44%), Gaps = 3/267 (1%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           ++    +  A    +        R     +E    L++    K+ F+ + ++ELR+PL  
Sbjct: 394 DFYPFDIFLAMVSFSTFWFIRFFRTSDENSELVGKLKEEHHKKDQFLANTAHELRNPLHG 453

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           ++     +   +  ++N +  Q+++ +      +  L+ND++D+  ++   + ++   + 
Sbjct: 454 MMNIAQSVMDEE-KAINGESKQHLKLLMTIGRRMSYLLNDLIDVTRMEQKGIPIHKRPVD 512

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           L  ++  V         E  ++I      +    +AD+ RL+QI   +L NA+ F+ +G+
Sbjct: 513 LQPIITMVIDMQKFIGEEKKLQIIANIPERFPFVLADQNRLIQILFNLLHNAVKFTDEGA 572

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFI 765
            + +   +        V + G  I ++  K +F  +   +   G+  G GLGLSI +  +
Sbjct: 573 -ITIDVEKRKNYAAIQVTDTGIGIDKEAQKRIFLPYEQGSDSYGESGGFGLGLSICKQLV 631

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSKE 792
            +HGG ++++S     +T    +P  E
Sbjct: 632 EMHGGTLTVTSVLHKGSTFTFTLPLAE 658



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 18/104 (17%)

Query: 694  ILSNAMDFS----SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            ++ NA+       +KG ++ +K    +G    S+ ++G  + ++  K +    V   ++ 
Sbjct: 920  LVENAVRHGILKKAKGGSIHIKIESVSGFINISIADDGIGMSDEKIKEI---LVKKPNQK 976

Query: 750  QRRGVGLGL----SIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            Q    G+GL    +       L+G  + I S     T ++ ++P
Sbjct: 977  Q----GIGLLNTDA---RLKQLYGTGLEIKSELGKGTIVSFQLP 1013


>gi|218705887|ref|YP_002413406.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli UMN026]
 gi|300901337|ref|ZP_07119429.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|218432984|emb|CAR13879.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli UMN026]
 gi|300355238|gb|EFJ71108.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
          Length = 1197

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  I       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVNIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|30261402|ref|NP_843779.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47526578|ref|YP_017927.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184232|ref|YP_027484.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49480021|ref|YP_035527.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|165870335|ref|ZP_02214990.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167634324|ref|ZP_02392645.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167639386|ref|ZP_02397658.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170686693|ref|ZP_02877913.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170706391|ref|ZP_02896852.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177651547|ref|ZP_02934336.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190568704|ref|ZP_03021608.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|196035324|ref|ZP_03102729.1| sensor histidine kinase [Bacillus cereus W]
 gi|196040758|ref|ZP_03108057.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|218902507|ref|YP_002450341.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227815859|ref|YP_002815868.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|228913969|ref|ZP_04077593.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926430|ref|ZP_04089502.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228944998|ref|ZP_04107359.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229120939|ref|ZP_04250181.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201]
 gi|229604389|ref|YP_002865818.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254682540|ref|ZP_05146401.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254726202|ref|ZP_05187984.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254733958|ref|ZP_05191672.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740354|ref|ZP_05198045.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254753742|ref|ZP_05205777.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254758838|ref|ZP_05210865.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30255256|gb|AAP25265.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47501726|gb|AAT30402.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178159|gb|AAT53535.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49331577|gb|AAT62223.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|164713830|gb|EDR19352.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167512825|gb|EDR88199.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167530212|gb|EDR92938.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170128925|gb|EDS97791.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170669216|gb|EDT19959.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172082825|gb|EDT67888.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190560120|gb|EDV14101.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|195992001|gb|EDX55964.1| sensor histidine kinase [Bacillus cereus W]
 gi|196028548|gb|EDX67156.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|218537752|gb|ACK90150.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227003278|gb|ACP13021.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|228662599|gb|EEL18197.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201]
 gi|228814667|gb|EEM60927.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228833254|gb|EEM78819.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845691|gb|EEM90718.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268797|gb|ACQ50434.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 466

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +      LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  IRI    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++++   +++   + +     S+K+ G  I  +  +++  RF        
Sbjct: 358 LHNVLDNAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWQIESEKGNGTTVSIKL 457


>gi|42524723|ref|NP_970103.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576933|emb|CAE78162.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 626

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 128/246 (52%), Gaps = 4/246 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R      +KN+ L + +E+K +F+  +S++L++P+  I G TD++ T  + +L+++Q +
Sbjct: 378 NRRSWEYYQKNKLLSQVEELKTNFISMMSHDLKTPIARIQGMTDVILTDSV-ALSNQQRE 436

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V+ I  SS  LL  +N IL    +++  ++LN  +  +N+LL EV +          I+
Sbjct: 437 AVDTIKHSSDDLLKFINAILSYGKIESQGVQLNMQSKDINNLLQEVIRKHEFLARVKRIQ 496

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           I    +        D + + Q+FS ++ NA+ +S + + +++ +       I  V + G 
Sbjct: 497 IVSELEPMFP-VQVDPELMKQVFSNLVENAIKYSPEDTKIMVSSEETPSKVIVQVADQGP 555

Query: 729 SIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP+D  +++F +F  + +      +G GLGL + + F  LH G++ + SS    +T   
Sbjct: 556 GIPQDELQNIFMKFFRSKNVKSSPIKGSGLGLYLAKYFTELHHGNIFVESSHGNGSTFTV 615

Query: 787 RIPSKE 792
            +P ++
Sbjct: 616 ELPIEQ 621


>gi|332702886|ref|ZP_08422974.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553035|gb|EGJ50079.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 519

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 131/276 (47%), Gaps = 19/276 (6%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y I P    +   T        R ER + +   A   A++ KN+F+ ++S+E+R+P+  I
Sbjct: 101 YLIKPFHERELHSTIEIALYKHRMEREVKDARRAAEAANKAKNTFLANMSHEIRTPMNGI 160

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G T+LL  +K   L+++Q + +  +  S+  L+ ++ND+LD + +++G + +    + L
Sbjct: 161 LGMTNLLLETK---LSAEQQEILGLVRDSAHALMTVLNDVLDFSKIESGRLAMTEEKLDL 217

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGS 706
            D++  + +++       ++++       + S + ADR R+ QI   ++ NA+ F+S GS
Sbjct: 218 CDIVQSIYKALRHAAAAKSLQLTFDVAADVPSMIRADRSRIRQILLNLMGNAIKFTSCGS 277

Query: 707 TVILKAARDNGD------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRR 752
            V L     +G                 V + G  IP D  + +F  F         +  
Sbjct: 278 -VRLAVDAPDGVAPNDPNGSGRFPLRLRVIDTGPGIPADKHEQIFESFTQLDGSLTRRHG 336

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+I      + GG++++ S+    +T    I
Sbjct: 337 GTGLGLTIARELARMMGGNITLQSTPGKGSTFTATI 372


>gi|332709210|ref|ZP_08429176.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332352019|gb|EGJ31593.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 431

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 138/315 (43%), Gaps = 12/315 (3%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITS------FDDERKSLQGTLELLSDSVLEYSIIPLPN 535
            +    +R  N+     L   +I           +R S Q  LE L+   LE  I     
Sbjct: 116 QVEEVLARVENQLTLHKLQTQLIEQNQLLQQEIRDRISAQTALEALNQE-LETRI----Q 170

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A+T+     +      E  L +  E  ++  ++K+  +  +S+E R+PL  I+   +LL+
Sbjct: 171 ARTVELRDYLEQLRNLESQLRQSLEREKEVSDLKSRIIFTISHEYRTPLMTILSSVELLE 230

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
             +    +S+Q ++   I  +   +  LVND+L +   +   ++     + L     E+ 
Sbjct: 231 QYRHKLTDSQQVKHFWRIQGAVKHMTTLVNDLLFINQAEFDKLEFQPVALNLVTFFQELF 290

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
             I + +   + R+   S       + D + + QI + I+SNA+ +S  G T++++   D
Sbjct: 291 CPIQSSLGAKH-RLLFSSKRDWEPILGDPKIIRQILNNIISNAIKYSPDGGTILVQLNGD 349

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               I  + + G  IP++    +F  F   ++ G   G GLGLSIV+S ++ HGG + + 
Sbjct: 350 EEKVILQIIDQGIGIPKEDQPKLFESFSRASNVGIIPGTGLGLSIVKSCVDSHGGKIHVE 409

Query: 776 SSDEGVTTINCRIPS 790
           S     TT    +P 
Sbjct: 410 SEVGVGTTFTITLPK 424


>gi|320158132|ref|YP_004190510.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
 gi|319933444|gb|ADV88307.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
          Length = 1176

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 78/356 (21%), Positives = 146/356 (41%), Gaps = 13/356 (3%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           + I  L+  V +    G++ LSN                   I+N A   S   +  +  
Sbjct: 508 QIIQELNNKVFIHDDKGQLVLSN------CSEYLKGNCTNCQIKNAATQISLVGDFEEVQ 561

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            +          +  +    +E +         +       +    +VT     E AL  
Sbjct: 562 QVLRGKRIKEYSQTVNCDLQIEHIYRERKAIRSLDHRKQFVLTVLQDVTAQKEREAALIA 621

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                + A + +  F+  +S+ELR+PL    G  DL+ T    S + +  + V     S 
Sbjct: 622 AQHEAQSAVKARERFLATMSHELRTPLAATYGLLDLVATH---STSERDKELVLRAKQSL 678

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             L  LV+++LD + ++AG ++++ +   L  LL++  +    K +   +   V I    
Sbjct: 679 NHLNLLVDEVLDYSKLEAGELQIHPAKNELLRLLSQTLRGFEAKANSKGLDYTVNIIPFS 738

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L   + D  R  QI S ++SNA+ F+ +G  + L A       + ++K+ G  + ++   
Sbjct: 739 LRWAMIDDLRFNQIVSNLISNAIKFTEQGD-ITLTAQVVKERLLLTIKDTGIGMTQEQLA 797

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++F  FV       R   G GLGL+IVE  +   GGH+++ S+    T ++  +P 
Sbjct: 798 NIFKPFVQADDSITRQFGGTGLGLAIVEQLLKQMGGHIALHSALNVGTQVDIELPL 853


>gi|325268223|ref|ZP_08134856.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
 gi|324989365|gb|EGC21315.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
          Length = 878

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 5/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R    +     +A   K  F  ++S+ELR+PLT I    + +      +L+ +Q   +
Sbjct: 354 AYRTTVMRRHIEEEATAAKLQFFTNISHELRTPLTLIADPVEYIIHDP--NLSPQQRGML 411

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +  +  +L  LV++ILD   V  G M+L+ S   L++ + +      T   + +I ++
Sbjct: 412 QIVQRNVAVLSRLVSEILDFRKVQNGKMQLHLSDFDLSECMRQWLGLFDTSARKKHITLQ 471

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +     +    ADR +L +I   +LSNAM ++ +G  +   A+ +       V +NG  I
Sbjct: 472 LHVPESIP-MRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADKVGIMVSDNGCGI 530

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +D    VF+RF    + G   G G+GL++V++F  LH G  ++ S +    T    +P 
Sbjct: 531 AQDDLPYVFDRFYQAGNAGH--GTGIGLALVKAFAELHHGQATVESEEGKGCTFVVSMPL 588

Query: 791 KE 792
           ++
Sbjct: 589 RQ 590


>gi|294665141|ref|ZP_06730443.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605102|gb|EFF48451.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 767

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 12/248 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+ +Q  Y 
Sbjct: 384 AWQLAMHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDIEQRSYT 440

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +   LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R  
Sbjct: 441 ESIRRAGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFS 500

Query: 671 VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
           +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 501 LEI-GLLGDITASGDCTRIRQILLNLLNNAIKFTERG-VVGLKLTTLGSYQGLRFEVADT 558

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I  +    +F RF             G GLGL+I +      GG + + S     T 
Sbjct: 559 GPGINVEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTR 618

Query: 784 INCRIPSK 791
               +P +
Sbjct: 619 FVVELPLR 626


>gi|225849089|ref|YP_002729253.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644480|gb|ACN99530.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 332

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 141/353 (39%), Gaps = 39/353 (11%)

Query: 440 IDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
           +D L EG+ +   + + I+  N   +   K E                  + + E    D
Sbjct: 14  LDFLKEGIIIVDDETKVIEFVNRFAKKFLKDENYE--------------GKNFKEVIDND 59

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
              ++I+   ++ K ++  + + +   L  ++  +   + +                   
Sbjct: 60  YIYSLISY--NQEKDVKAEVNIDNQKYL-INVYRIEGKKIIHIQ---------------D 101

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
                   + K  FV +VS+EL++P++ +    + ++  K   +     ++V        
Sbjct: 102 ITPFEVYKQAKKDFVSNVSHELKTPISVLKSAVETIEEEKDPVM---IKKFVNIAKKRIE 158

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            + +L+ND+L LA +++   ++      L+  + E+ + +     E  I++      K  
Sbjct: 159 QMDHLINDLLILARLESQEDQVKKERYDLHKQIEEIFEDLKHLTEEKEIQLINQVPNKFD 218

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
              AD Q+L      ++ NA+ ++ +   VI+KA +D+     +V++ G  IPE+    +
Sbjct: 219 -VYADEQKLSIALKNLIENAIKYNKQNGKVIVKAVKDSKYTTITVEDTGIGIPEESIPLI 277

Query: 739 FNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F RF        R   G GLGLSIV+     H G V + S     +    +IP
Sbjct: 278 FERFYRVDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESKLGEGSKFFIKIP 330


>gi|196033201|ref|ZP_03100614.1| sensor histidine kinase [Bacillus cereus W]
 gi|195994630|gb|EDX58585.1| sensor histidine kinase [Bacillus cereus W]
          Length = 484

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 124/271 (45%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMEKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +    DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVWSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|329571903|gb|EGG53581.1| PAS domain S-box protein [Enterococcus faecalis TX1467]
          Length = 591

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 152/378 (40%), Gaps = 31/378 (8%)

Query: 419 LTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +          G
Sbjct: 234 LSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML---------G 284

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              +N+ +       ++D   L   ++    S   E    QG   L  D  L Y  +   
Sbjct: 285 LSAKNMQSNYLEVIQDADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRY--LDDQ 342

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +A          D  R  +            ++++  FV +VS+EL++P+T+++GFT+ L
Sbjct: 343 SANDYQVLGIAYDLTRVRQL-----------EKMQKDFVSNVSHELKTPVTSLLGFTETL 391

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                       +Q++  +   +  L  L+ +IL+L+   +  +      I L   + E+
Sbjct: 392 IDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEI 449

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A 
Sbjct: 450 LGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAI 508

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
           +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG +
Sbjct: 509 ENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKI 568

Query: 773 SISSSDEGVTTINCRIPS 790
           +I S     TT    +P 
Sbjct: 569 AIDSHLGLGTTFTITLPL 586


>gi|262195776|ref|YP_003266985.1| histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262079123|gb|ACY15092.1| histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 397

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 133/263 (50%), Gaps = 13/263 (4%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              N  +       L +  E +++ D +K+SF+  VS+ELR+PLT++IG+ ++L     G
Sbjct: 122 MEHNYAELTAKNERLEQAVEHMQEVDRVKSSFLATVSHELRTPLTSVIGYAEMLFEGLAG 181

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q  Y++ I + +  LL L+  +L+ + +++G + + +  + +N ++  V  S+  
Sbjct: 182 PLNKEQRDYLQTILSKADQLLQLITALLETSILESGPVPIQHEPLDMNQIIERVLSSLGP 241

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------ 714
           +     I ++      L   + D +R+ Q+   +++NA+ F+++ + + ++         
Sbjct: 242 QARARTIEVR-PIPADLPRILGDARRMRQVLRALIANAVKFTTERARIDIEVRVAPLSRY 300

Query: 715 -DNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLH 768
            D GD       V + G  IP +  +S+F  F        RR  G GLGL++ +S+I  +
Sbjct: 301 ADEGDTPGVRVVVADAGIGIPLEDQESIFEPFFQVDSSSTRRYGGTGLGLTLAKSYIEAN 360

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
           GGH+ + S+     +    +P++
Sbjct: 361 GGHIWVESAPGEGASFTFTVPAE 383


>gi|213401691|ref|XP_002171618.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999665|gb|EEB05325.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1777

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 156/410 (38%), Gaps = 41/410 (10%)

Query: 406  SNPRGGTIWMF---ENLTVQVDLETKYNTLVKV------QGETIDHLSEGVAVFGPDGRI 456
             N +G  I  F    ++  Q   E +     +            +   + V    P   I
Sbjct: 971  RNSKGVVIQYFGTMMDVHEQKMAEQEARKQSEAAANINDYRSLAEASPQIVFAVNPIDGI 1030

Query: 457  KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              +N  + S              +  +       + E     L     + F +  K+   
Sbjct: 1031 VYANAQWLSFSGLSFEESMGLGFLSVV-------HPEDRMKCLLPGTSSKFPNSDKTYAI 1083

Query: 517  TLELLSDSVLEYSIIPLP-----------NAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             +   S +V +Y    +            N   + T  ++ D    E  L E N   ++ 
Sbjct: 1084 EVRFRS-TVGQYRWHLVKCVCVNQFADTSNVLWLGTCTDIHDHKLLEEKLQEANREAQRM 1142

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
               K  F+ ++S+E+R+PL  I G  + L  +   +L S+Q  Y   I  SS  LL+++N
Sbjct: 1143 MNSKTRFLSNMSHEIRTPLVGITGMVNFLLDT---NLTSEQLDYAHTIQQSSEALLSVIN 1199

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADR 684
            DILDL+ V+AG+MKL +    +  ++ +  ++++T     N+ +  + D  +    + D+
Sbjct: 1200 DILDLSKVEAGMMKLTHEAFSVRSMMEDTNETLSTLAFSKNLELNYVVDHDVPDMVIGDQ 1259

Query: 685  QRLLQIFSKILSNAMDFSSKGSTV-------ILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
             RL Q+   ++ NA+ FS +G              A +     +   + G    ++  + 
Sbjct: 1260 ARLRQVALNVIGNALKFSHEGEVFCQCSVKPTQGLAPNEIMLQWECYDTGPGFSKEDEEK 1319

Query: 738  VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            +F  F         +  G GLGL I    I LH G +S +S  +  +   
Sbjct: 1320 IFKPFSQIDDSLTRKHGGSGLGLVISRELIELHEGTMSCTSVKDRGSAFY 1369


>gi|15599141|ref|NP_252635.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9950133|gb|AAG07333.1|AE004812_8 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 1212

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 161/394 (40%), Gaps = 25/394 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G   +    + V+  +E   +  ++      D +   + V   +GR+   N ++      
Sbjct: 550 GWVTYQRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGL 609

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVL 526
               +      R +       +   +    F         E ++++    +     +  +
Sbjct: 610 SSEEVMN----RTVLELPMENF---ETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWI 662

Query: 527 EYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           ++ I P  ++       +  ++++T+  +    L E      +A   K +F+  +S+E+R
Sbjct: 663 DHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIR 722

Query: 582 SPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +P+  +IG  +L LK ++ G ++      +E   AS+  LL L+ DILD+A +++G + L
Sbjct: 723 TPMNAVIGILELALKRAETGRVD---RSSIEIAYASAKSLLELIGDILDIARIESGRLSL 779

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAM 699
           +     L +L+  V +       +  + + +  D  + G  + D  R  QI S ++SNA+
Sbjct: 780 SPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAI 839

Query: 700 DFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGV 754
            F+ +GS  + +   +     +     V++ G  I     + +F  F           G 
Sbjct: 840 KFTDEGSIRIRIDGRQVEPSLLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQNTEGT 899

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL I  S   + GG + +SS     T I+  +
Sbjct: 900 GLGLVISRSLCEMMGGRLVMSSELGQGTRIDVEL 933



 Score = 41.9 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG--- 230
              ++       + LS+ +   + L D +   ++ RD  G +L  N SY ++        
Sbjct: 555 QRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEV 614

Query: 231 -----IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                +       E+   F       M     +E  +   +   E   +   +  R  + 
Sbjct: 615 MNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSG 674

Query: 286 F--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              G     +D+++   + D+L     +    + A   F
Sbjct: 675 TIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTF 713


>gi|254236839|ref|ZP_04930162.1| hypothetical protein PACG_02859 [Pseudomonas aeruginosa C3719]
 gi|126168770|gb|EAZ54281.1| hypothetical protein PACG_02859 [Pseudomonas aeruginosa C3719]
          Length = 1212

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 161/394 (40%), Gaps = 25/394 (6%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G   +    + V+  +E   +  ++      D +   + V   +GR+   N ++      
Sbjct: 550 GWVTYQRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGL 609

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL---SDSVL 526
               +      R +       +   +    F         E ++++    +     +  +
Sbjct: 610 SSEEVMN----RTVLELPMENF---ETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWI 662

Query: 527 EYSIIPLPNA-----QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           ++ I P  ++       +  ++++T+  +    L E      +A   K +F+  +S+E+R
Sbjct: 663 DHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIR 722

Query: 582 SPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           +P+  +IG  +L LK ++ G ++      +E   AS+  LL L+ DILD+A +++G + L
Sbjct: 723 TPMNAVIGILELALKRAETGRVD---RSSIEIAYASAKSLLELIGDILDIARIESGRLSL 779

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAM 699
           +     L +L+  V +       +  + + +  D  + G  + D  R  QI S ++SNA+
Sbjct: 780 SPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAI 839

Query: 700 DFSSKGST-VILKAARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGV 754
            F+ +GS  + +   +     +     V++ G  I     + +F  F           G 
Sbjct: 840 KFTDEGSIRIRIDGRQVEPSLLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQNTEGT 899

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GLGL I  S   + GG + +SS     T I+  +
Sbjct: 900 GLGLVISRSLCEMMGGRLVMSSELGQGTRIDVEL 933



 Score = 41.9 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG--- 230
              ++       + LS+ +   + L D +   ++ RD  G +L  N SY ++        
Sbjct: 555 QRRQIRVRARVEQALSDQLRFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEV 614

Query: 231 -----IVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
                +       E+   F       M     +E  +   +   E   +   +  R  + 
Sbjct: 615 MNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSG 674

Query: 286 F--GEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF 322
              G     +D+++   + D+L     +    + A   F
Sbjct: 675 TIRGVICGWLDITEHRQLIDELEEAKNLADEASRAKTTF 713


>gi|256829655|ref|YP_003158383.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578831|gb|ACU89967.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 979

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 23/256 (8%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L  + EA   A   KN F+  +S+E+R+P+  I+GFTD+    +      +  QY+  
Sbjct: 431 RQLKLEREASAMAARAKNLFLARMSHEIRTPMAAILGFTDIALRMQCCD---QVRQYLLK 487

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+  LL L+N+ILDLA ++AG + + + +  L  L  EV + +A    +N   + + 
Sbjct: 488 VKVSAGHLLGLINEILDLAKIEAGKLDVEHKSFDLLCLAREVCEIVAPMAEKNGNELLLE 547

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI--------------LKA---AR 714
           +D  L      D  RL Q+   +  NA+ F+  G   I              + A   + 
Sbjct: 548 ADPDLPVHVFGDPMRLRQVLVNLAGNAVKFTKNGEVRIAMGFAKAVPGAAYAVDAHAFSS 607

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHV 772
               F F + + G  IP ++   +F  F         +  G GLGL+I    + L GG +
Sbjct: 608 GRQRFRFEISDTGPGIPAELIPRLFQAFEQGGGDTASRYGGAGLGLNISSRLVELMGGVI 667

Query: 773 SISSSDEGVTTINCRI 788
            +SS     +T    +
Sbjct: 668 GLSSERGQGSTFWVEL 683


>gi|168702167|ref|ZP_02734444.1| multi-sensor signal transduction histidine kinase [Gemmata
            obscuriglobus UQM 2246]
          Length = 1076

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 134/800 (16%), Positives = 273/800 (34%), Gaps = 93/800 (11%)

Query: 41   IILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLH 100
             I  I  R      +  T   L E   ++++  S   +     + W   DE   ++    
Sbjct: 295  YIADITPRKRTEHALQTTRDQLREA-LRVARLGSWTWDEVAGRVEWS--DEAAAVLDLPA 351

Query: 101  QRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSF--DLVAETQNDCA-IKIEG 157
              I +P      L     +       + +    +R     F  DL   T +  A I  + 
Sbjct: 352  PTIPMPLDSLMGL-----IYPDDRGTVLEQFAAVRAGADRFATDLRVTTADGVAWIHCQA 406

Query: 158  RVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILW 217
            R        R+  LDG+  ++ E       L +  S+  ++  +    +   +   + L+
Sbjct: 407  RAVRETGG-RLARLDGLVQDITERMRAAGALRDRESLLSIVTSAARVGLVVVNDRYEYLF 465

Query: 218  ANISYKKNTETEGIVFQKAIGESRKLFKE----EIKKRMISSSALEKN----FCETVSTL 269
            AN +Y       GI   + +G            +IK  +  + A E        E +   
Sbjct: 466  ANDTYA---AVLGIPPDQIVGRRVPDLLSASWPQIKPHLDRALAGEHVSYDLEREPLPGG 522

Query: 270  EHGN--NKSYKIVRVLNSFGEAGIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFD 323
                     Y+            + ID ++    E  + +       ++  L  A+ I +
Sbjct: 523  AGWRTLRVMYEPRPKDGRQTAVVVVIDQTEQKQAETAIRESEKRFRTLVSALPDAVYI-N 581

Query: 324  QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK 383
               ++ F N + V L+           +  +L+             + +T ++ I ++  
Sbjct: 582  AGGHVAFCNPACVRLFGASAPEALIGKTPFDLM----------HPDDHETIRQRIAAISA 631

Query: 384  SSET---HKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNTLVKV 435
            S  +    ++     +G  + V+VT+           + +  +L+ Q   E + +    +
Sbjct: 632  SGASNPGIEERIVRFDGTPVPVMVTAIAITDRGERAFLVVLRDLSEQKRAEQQLHYQELL 691

Query: 436  QGETIDHLSEGVAVFGP-----DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              E  +    G   F P     D    ++N               P             +
Sbjct: 692  LREAAELAHVGGWWFDPVTLEGDWTPVVAN-----------IHDLPPDAPPPKPDRGIEF 740

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDS----VLEYSIIPLPNAQTMLTF---- 542
            Y E D     A  + +  +        L+L+S       +     P+     ++      
Sbjct: 741  YVEEDRPR-IAQAVRAATESGTPYDLELQLVSARGAFKWVRTIARPIVEEGRVIRVRGSL 799

Query: 543  VNVTDSVRAERALTEKNEALRKADEIKN-----------SFVQHVSYELRSPLTNIIGFT 591
             ++TD  RAE  +   N  L +    +            +F   VS++LR+PL  I GF+
Sbjct: 800  QDITDRKRAEAEIRHLNADLEQRVRDRTIELEAANAELEAFSYSVSHDLRAPLRAIDGFS 859

Query: 592  DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
             ++       L +   +Y+  + A++  +  LV+D+L  + +  G   +    +  ++L+
Sbjct: 860  QIVLNEYGPQLPADAREYLTDVCANTLRMGRLVDDLLTFSRL--GRQPVRRQPVNTSELV 917

Query: 652  NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                  +  +     I I+     +L    AD   L Q++  +L+NA+ +SS  S  +++
Sbjct: 918  AGCLDELLRQTGARRIEIR---SNELPPCDADPALLRQVWLNLLANALKYSSLSSLALIE 974

Query: 712  AARD---NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
                   +G   F V++NG          +F  F          G G+GL++V+  ++ H
Sbjct: 975  VGATASPDGPVYF-VRDNGVGFDMRYAHKLFGVFQRLHRAEDYEGTGIGLALVQRIVHRH 1033

Query: 769  GGHVSISSSDEGVTTINCRI 788
            GG V   S      T +  +
Sbjct: 1034 GGRVWADSEPGKGATFSFTL 1053



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 117/410 (28%), Gaps = 40/410 (9%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGES 240
              + +  +   ++ + + D     V+ +D+ G  L  N S  +     G    + +G  
Sbjct: 46  ARRELETFAGAGALLRAVADGTTDAVFVKDRDGRYLLLNESAARFA---GRPVAELLGRD 102

Query: 241 RKLFKEEIKKRMISSS-----ALEKNFCETVSTLEHGNNKSYKIVRVL------NSFGEA 289
                +    RM+        A  +           G  +++   +           G  
Sbjct: 103 DTALFDPASARMVRDHDRRVMAANRAETTEEELTTAGVTRTFLATKAPYRNEHGEVIGLV 162

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIF--------DQNRYLQFHNRSFVELWEI 341
           GI+ D++       +L    +       A+ +         D      + +    +++ I
Sbjct: 163 GISRDITDRKDAERELRAERDRFQKFVEAVPLVLCSFRLSPDGTTSFVYSSPRIEDIYGI 222

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH-LPNGQT- 399
             A LA                 L    +    +  I    +     +  +   P G+  
Sbjct: 223 GPAALA---------RDAAPIFGLIHPDDRDRVRSGIEESARGLFQWRAEFRVRPPGRDE 273

Query: 400 LHVIVTSNP----RGGTIWM--FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP- 452
           L +   S P     G T+W     ++T +   E    T      E +     G   +   
Sbjct: 274 LWIDGRSAPEREADGSTVWHGYIADITPRKRTEHALQTTRDQLREALRVARLGSWTWDEV 333

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            GR++ S+ A   L         P   +  +     R         + A       D R 
Sbjct: 334 AGRVEWSDEAAAVLDLPAPTIPMPLDSLMGLIYPDDRGTVLEQFAAVRAGADRFATDLRV 393

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           +    +  +              A+      ++T+ +RA  AL ++   L
Sbjct: 394 TTADGVAWIHCQARAVRETGGRLARLDGLVQDITERMRAAGALRDRESLL 443



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 83/269 (30%), Gaps = 32/269 (11%)

Query: 316 TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
           T A+ + D++      N S        +A L             R    L +  + +  +
Sbjct: 68  TDAVFVKDRDGRYLLLNESAARFAGRPVAELLG-----------RDDTALFDPASARMVR 116

Query: 376 ENIFSVYKSSETHKDTWHLPN-GQTLHVIVTSNPRG-------GTIWMFENLTVQVDLET 427
           ++   V  ++        L   G T   + T  P         G + +  ++T + D E 
Sbjct: 117 DHDRRVMAANRAETTEEELTTAGVTRTFLATKAPYRNEHGEVIGLVGISRDITDRKDAER 176

Query: 428 KYNTLVKVQGETIDHLSEGVAVF--GPDGR--IKLSNPAFRSLWKTEENRLSPG-THIRN 482
           +         + ++ +   +  F   PDG      S+P    ++      L+     I  
Sbjct: 177 ELRAERDRFQKFVEAVPLVLCSFRLSPDGTTSFVYSSPRIEDIYGIGPAALARDAAPIFG 236

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
           +     R    S   +    +     + R    G  EL     ++    P   A     +
Sbjct: 237 LIHPDDRDRVRSGIEESARGLFQWRAEFRVRPPGRDEL----WIDGRSAPEREADGSTVW 292

Query: 543 V----NVTDSVRAERALTEKNEALRKADE 567
                ++T   R E AL    + LR+A  
Sbjct: 293 HGYIADITPRKRTEHALQTTRDQLREALR 321


>gi|159897123|ref|YP_001543370.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890162|gb|ABX03242.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 880

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 18/251 (7%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  +  + AD +K+ F+  +S+ELR+PL  IIGF+ +L       L  +Q + +E I
Sbjct: 617 ELREALDRAQAADRLKSQFLASISHELRTPLNAIIGFSTVLLDELSPLLVEEQREDLETI 676

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + +   LL+L+NDILD+A ++AG   L+     +  ++      +   ++   + +++  
Sbjct: 677 NKNGRYLLDLINDILDMARIEAGKFALHREATAVLPVVQSAVDIMHG-LNSKPVTMRIDI 735

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--------------DNGDF 719
              L     D  RL QI   ++SNA+ F+ +G  V+    R                   
Sbjct: 736 APDLPRMDVDPTRLRQIVINLISNAVKFTDRGQIVVRAIRRVVQEATPIGSHYLLPGDWI 795

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           + SV++ G  +  +    +F  F    H G R   G GLGLSI    ++LH G + + S 
Sbjct: 796 VISVQDTGIGMDAEALGKLFQEFQQV-HAGARGILGSGLGLSITRRLVDLHDGDLWVDSK 854

Query: 778 DEGVTTINCRI 788
               +T +  I
Sbjct: 855 VGVGSTFSFAI 865


>gi|229160352|ref|ZP_04288350.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803]
 gi|228623076|gb|EEK79904.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803]
          Length = 466

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILLTIWIGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +    I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTHLIHKEADR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  IRI    D ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRIATNLDPEII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +I+   + +      +K+ G  I  +   ++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLEKIDDYCELKIKDTGIGIDIEHLDNLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++H G  SI S     TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGQWSIESEKGNGTTVIIKL 457


>gi|165924538|ref|ZP_02220370.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229841162|ref|ZP_04461321.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843267|ref|ZP_04463413.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903349|ref|ZP_04518462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|165923598|gb|EDR40730.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229679119|gb|EEO75222.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|229689614|gb|EEO81675.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697528|gb|EEO87575.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 949

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 353 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 408

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 409 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 449

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 450 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 506

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 507 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 566

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 567 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 625

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 626 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 685

Query: 784 INCRIPS 790
              RIP 
Sbjct: 686 FAIRIPL 692


>gi|302808047|ref|XP_002985718.1| hypothetical protein SELMODRAFT_1415 [Selaginella moellendorffii]
 gi|300146627|gb|EFJ13296.1| hypothetical protein SELMODRAFT_1415 [Selaginella moellendorffii]
          Length = 428

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 12/249 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R E  L    +A   AD+ K+ F+ ++S+E+R+PL  II  T+L   ++      +Q
Sbjct: 16  ERKRIEVELQMAKDAAVAADKAKSEFLANMSHEIRTPLNGIINCTELCLDTRTSL---EQ 72

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++ +  S+  LL ++ DILD + ++AG +++      L D L      +A + H+  
Sbjct: 73  QEYLDLVRFSAKHLLRIITDILDFSKIEAGKLEMEEIQFSLYDQLEHAVSVLAARAHKKG 132

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK----AARDNGDFIF 721
           + I   +   +    + D  RL QIF  ++ N++ F+ KG  V+         D  + IF
Sbjct: 133 LEIAWRAALDVPDQLIGDPGRLFQIFVNLIGNSIKFTEKGEVVVSAQVHNIYLDRVELIF 192

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSD 778
           +VK+ G  IP+     +F  F        R    G GLGL I         G + + S  
Sbjct: 193 AVKDTGVGIPKAKQSLLFQAFSQVDSSTTRWLYGGTGLGLVISSKLAAAMAGKMWVESE- 251

Query: 779 EGVTTINCR 787
              +     
Sbjct: 252 GKGSIFYFT 260


>gi|150007276|ref|YP_001302019.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149935700|gb|ABR42397.1| two-component sensor histidine kinase, with response regulator
           receiver domain [Parabacteroides distasonis ATCC 8503]
          Length = 791

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 145/351 (41%), Gaps = 26/351 (7%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +A +  DG +   N  +  +       ++    I +I     ++      + ++  +I +
Sbjct: 178 IASYDYDGVVASYNRQY--MAPELHEEMTEKLQIAHIEPILRKHGE----YIVYGTMIEN 231

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
             +  K ++ +      ++   +   +           + +  + ++ L E  ++   A+
Sbjct: 232 GVNREKKMRFSYYDREKNIWLMTRTDI---------TEIKEERKQKKLLQEALQSANAAN 282

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F+  +S+++R+P+  I+G T + +      +  + +  ++ I+ SS +LLNL+N+
Sbjct: 283 RAKTDFLSRMSHDIRTPINAIVGMTAIARLHMDDQM--RIADCLKKITISSKLLLNLINE 340

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQ 685
           +LD++ +++  + L      +N+LL  +   +         + ++     K    + D Q
Sbjct: 341 VLDMSKLESDKIMLTEEAFKINELLESLFVMVQPAFEAKKQKFQIHVTKIKHECLIGDVQ 400

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVF 739
           R+ Q    +L+NA+ ++ +   + L            G F  +V +NG  +  +  + VF
Sbjct: 401 RIQQALLNMLTNAIKYTPEDGQIQLTVEEKPSVYNGYGQFEITVTDNGIGMKPEFLEKVF 460

Query: 740 NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F  +  +     +G GLG++I      +  G + + S     +    R 
Sbjct: 461 EPFERSDDKAIRNIQGTGLGMAISRHIAQIMNGDILVESEYGKGSKFTMRF 511


>gi|134056909|emb|CAK37812.1| unnamed protein product [Aspergillus niger]
          Length = 1905

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 173/464 (37%), Gaps = 42/464 (9%)

Query: 344  AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV------YKSSETHKDTWHLPNG 397
            +FL  +  +   L+  +   K      ++ +  +I  +      Y+      + WHL  G
Sbjct: 994  SFLDIHEQHIAELKAAQEREKFATDAKYRAFSNSIPQIVFEATEYRGLIFVNEQWHLYTG 1053

Query: 398  QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
            Q L   +     G    +  +   +  L + Y    +  G  ID                
Sbjct: 1054 QKLEDALN---FGFAKHVHHDDLEKCGLLSLYLHESQKTGGAIDA--------------- 1095

Query: 458  LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG- 516
                   +           G  +        +    S   D    +  S +   +S  G 
Sbjct: 1096 -GEAPAETTAAKNSQEKHLGQGVTPALEELVKRGVASVQRDENGRVFYSTELRLRSKGGD 1154

Query: 517  -TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQH 575
                L+    +E S      A    T  ++ D    ER L +  + L    E K  F  +
Sbjct: 1155 FRWHLVRLVCVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNNQMESKTKFFSN 1214

Query: 576  VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            +S+E+R+PL  I+G    +  ++   L++ Q + ++ I  SST L  LV++ILD++ V+A
Sbjct: 1215 MSHEIRTPLNGILGTIPFILDTQ---LDTDQRRMLDTIQNSSTNLRELVDNILDVSRVEA 1271

Query: 636  GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKI 694
            G M L  S   +  ++ +V  +++++  +  + I  + D       + DR R+ Q+   +
Sbjct: 1272 GKMSLVNSWFHVRSVIEDVIDTVSSRAIDKGLEINYLMDVDVPPMVIGDRFRIRQVLINL 1331

Query: 695  LSNAMDFSSKGSTVILKAARDNGDFI---------FSVKNNGSSIPEDMCKSVFNRFVS- 744
            + NA+ F+++G   I  +   +             F V + G        + +  RF   
Sbjct: 1332 VGNAVKFTAQGEIHICCSIYHDASAQIKKTELLLNFDVVDTGKGFSARDAERLMQRFSQL 1391

Query: 745  -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                  Q  G GLGL + +  + +HGG ++ SS +      +  
Sbjct: 1392 GQNGSQQHAGSGLGLFLSKQLVEMHGGKLTPSSKEGQGAKFSFH 1435


>gi|145599745|ref|YP_001163821.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Pestoides F]
 gi|145211441|gb|ABP40848.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides F]
          Length = 926

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 330 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 385

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 386 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 426

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 427 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 483

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 484 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 543

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 544 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 602

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 603 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 662

Query: 784 INCRIPS 790
              RIP 
Sbjct: 663 FAIRIPL 669


>gi|115359896|ref|YP_777034.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
 gi|115285184|gb|ABI90700.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 1022

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 115/260 (44%), Gaps = 10/260 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F + T   R    L E   A   A+  K+SF+   S+E+R+PL  I+G  +LL+ + 
Sbjct: 472 IAIFADTTAQRRLVHQLEEAVRAADSANAAKSSFLAATSHEIRTPLNVILGNLELLERT- 530

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L++ Q   V+ + AS+  LL +V+DILD + ++AG M +      +  ++     + 
Sbjct: 531 --ALDASQQSRVQTLRASAEGLLAIVSDILDFSKIEAGAMTVESIEFDVIAVIERELAAF 588

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---- 713
           A       + +    D         D  RL Q+   +L NA+ F+S+G  V   A     
Sbjct: 589 APVARAKGLPLFADIDASAAQRMRGDPTRLAQVVGNLLGNAIKFTSEGRIVARVAVGHDV 648

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
           R   +    +++ G  I       +F  F         +  G GLGL++ +  +   GG 
Sbjct: 649 RGRPELAIGIEDTGIGIDPAQHARLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGT 708

Query: 772 VSISSSDEGVTTINCRIPSK 791
           +S+ S+    +    R+P +
Sbjct: 709 ISVHSAPGVGSLFTVRLPLR 728


>gi|331663934|ref|ZP_08364844.1| sensor protein EvgS [Escherichia coli TA143]
 gi|331059733|gb|EGI31710.1| sensor protein EvgS [Escherichia coli TA143]
          Length = 1197

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  I       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVNIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|295083878|emb|CBK65401.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 541

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/517 (20%), Positives = 211/517 (40%), Gaps = 47/517 (9%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFD--QNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              N     +++IL NL   I + D   +    + N+       I     A   ++ E+ 
Sbjct: 45  KKTNHSYRFSFDILDNLPFPIFVKDIANDFRYYYWNKESAVQSGISSEE-AIGHTDYEIY 103

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG---QTLHVIVTSNPRGGTI 413
              R          ++   + +    K     ++ +  P+G    T+ V    +  G   
Sbjct: 104 GEERGE-------KYRNIDKELVQEGK-VYRKEEKYITPDGITHDTIAVKSIISWEGEKR 155

Query: 414 WMF---ENLTVQVDLETKY-------NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           W+      +T   + E +           +K Q   +  +  G+     + R+      +
Sbjct: 156 WLLATRWEITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRV-----QW 210

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
               +              I    S   NE  G   F   I      R ++      + +
Sbjct: 211 EETRQIASLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTI-----RVDN 265

Query: 524 SVLEYSIIPLPNAQ-------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
              E +  P+   +        +L F N+T+ ++  R L E  E   +++ +K++F+ ++
Sbjct: 266 VDFEVTATPVFGDEKETEIIGGLLRFENITEKLKMNRMLQEAKEKAEESNRLKSAFLANM 325

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+E+R+PL  I+GF++++  ++       + ++V+ IS+++ +LL L++DILDL+ ++AG
Sbjct: 326 SHEIRTPLNAIVGFSEMVCQTEEEEE---KQEFVKIISSNNILLLQLIDDILDLSKIEAG 382

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            M+  ++   +N+L+  + + +  K    +++I             DR RL Q+     +
Sbjct: 383 TMEFTFAQTDINELMEGICRQMQEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTN 442

Query: 697 NAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVG 755
           NA+ F+SKGS  +  +    + +  F VK+ G  IP D    VF RFV        +G G
Sbjct: 443 NALKFTSKGSIEMGYRIEEASDEIYFYVKDTGIGIPADKIDKVFERFVKLNSF--IKGTG 500

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+I    +   GG +   S +   +    +IP  E
Sbjct: 501 LGLAICRVIVERLGGVIGAESKEGEGSCFWFKIPRTE 537


>gi|186894665|ref|YP_001871777.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis PB1/+]
 gi|186697691|gb|ACC88320.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 957

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 361 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 416

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 417 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 457

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 458 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 514

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 515 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 574

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 575 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 633

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 634 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 693

Query: 784 INCRIPS 790
              RIP 
Sbjct: 694 FAIRIPL 700


>gi|74317211|ref|YP_314951.1| multi-sensor signal transduction histidine kinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056706|gb|AAZ97146.1| Multi-sensor Signal Transduction Histidine Kinase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 857

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 120/749 (16%), Positives = 234/749 (31%), Gaps = 61/749 (8%)

Query: 59  YSFLSEICDQLSKYHSLLTENNCLTIV---WDGKDETPEIIGQLHQRIDIPQTDTDLLSF 115
              L +       +  L  E + + +     DG   TP    +   R+  P  D      
Sbjct: 145 RERLRDASGSADFHAMLALERDEIYVSRLDLDGGQATPARPLKPTLRLATPVYDRQGNRR 204

Query: 116 ENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
              +   + ++L    ++LR   +S     + ++   +  +G               G  
Sbjct: 205 GI-IVLDYLVEL--FLDRLRNIRES---DRQPRSIRLLSADGYTLPDQEKPDGPDPMGQR 258

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
              +    +  +                   W R  +G       +  +    +G+    
Sbjct: 259 ETESRLGERDPQ------------------AWQRIGSG------AAEGQFVTGQGLYTYA 294

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG--NNKSYKIVRVLNSFGEAGIAI 293
            I                 +  L       V  +              +   F  A  AI
Sbjct: 295 WIDPLSPPGAAPADADTRRALLLAYKPAAAVDAIGGTLKQRLWLVFGVLALLFTFAAWAI 354

Query: 294 ------DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
                     E  V         +L +   AI I D    ++  N    + +      L 
Sbjct: 355 TFYSMRRRMAEENVRASEARFRALLESAPDAIVIADPKGRIELANAQAEKYFGYTRDELL 414

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKT--WKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
                  + E LR  + +  + N+    +   + +  +     KD    P   +L  + T
Sbjct: 415 HQSIEILVPESLRDRH-VSHRANYAADPYPRPMGAGLELFGRRKDGSEFPIEISLSPLQT 473

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA--VFGPDGRIKLSNPAF 463
                    +  +++ +  +E +         E +D+L  GV     G DGR    NPA 
Sbjct: 474 PQGMV-VTAIIRDISARKQIERQRKDAQTRYRELMDNLPVGVYRKTAGADGRFLEVNPAL 532

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
            S+ + +         +        R     D   L A  + + + E  +L+G       
Sbjct: 533 VSMLEADSAAALLERPLATFRTAEGRPLFGGDERQLDA--VVNAEIELLTLKG---RPFH 587

Query: 524 SVLEYSIIPLPNAQTML--TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
             +   +    + +T       +VT     ER L  +   L   +    +F   VS++LR
Sbjct: 588 GAISARLRREADGRTYYDGIIEDVTARKEIERQLESRTAELEAINRELEAFSYSVSHDLR 647

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I GF+ +L T     L+      +  I  ++  +  L++D+L L+ V     +L 
Sbjct: 648 APLRAIDGFSRILLTDYTERLDETGRDRLGRIRRAAQHMGTLIDDLLKLSRVT--RTELK 705

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
              + ++ L  +V   +  +  E+ +   +           DR  L  +   +L NA  F
Sbjct: 706 PEDVDMSALAEDVANDLRRQTPEHEVAFSI---APALHANGDRGLLRIVLDNLLGNAWKF 762

Query: 702 S--SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           +     + V L      G  ++ V +NG+         +F  F       +  G G+GL+
Sbjct: 763 TGGRPDARVSLDVDLRGGQTVYVVSDNGAGFDMAYADKLFGVFQRLHDVKEFPGTGIGLA 822

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
            V+  ++ HGG +   S           +
Sbjct: 823 TVQRIVHKHGGRIWAESEVGRGARFYFTL 851


>gi|319790225|ref|YP_004151858.1| PAS/PAC sensor signal transduction histidine kinase [Thermovibrio
           ammonificans HB-1]
 gi|317114727|gb|ADU97217.1| PAS/PAC sensor signal transduction histidine kinase [Thermovibrio
           ammonificans HB-1]
          Length = 384

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 147/360 (40%), Gaps = 34/360 (9%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           K+    +  + EG+ +  P GRI  +N   R L   +               T   +Y  
Sbjct: 55  KLLARALSLIREGIVIMDPYGRIVFTNRFARELLDIKP------------EDTGKFFYQA 102

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
              +D+ + I  +F+++ K  Q   + + D  ++       + + +              
Sbjct: 103 IKNFDIVSLINEAFNEKYKVWQE--KKVKDRYVQIIFGSDMDEKVL-------------- 146

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L      +++ + +K  F+ + S+EL++PL  +    + L+       N K S +V+  
Sbjct: 147 -LLIDLTPIKQYENLKKDFIANASHELKTPLAALKLSLEALEEECGN--NPKASHFVKRA 203

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
               T +  L+ D L L+ +D+  + +    + L  L+ E+ + ++  +    +++K+  
Sbjct: 204 LERITFMEQLIEDFLTLSRLDSTNLTVKLQEVELLPLVREILKGLSDFIVRKQLKVKLSV 263

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +  +  AD + L  +   ++ NA+ ++  G  + +       +   SV + G  IP+ 
Sbjct: 264 PQE-AAVYADEKMLYAVLKNLIDNAIKYNRDGGEIEISFREHAKEVEISVCDTGYGIPKS 322

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F RF        R   G GLGLSIV+  ++  GG V + + +   T     +P +
Sbjct: 323 HLPFIFERFYRVERSRSRKLGGTGLGLSIVKLAVDKMGGKVEVETREGEGTCFRVYLPKR 382


>gi|261253840|ref|ZP_05946413.1| aerobic respiration control sensor protein ArcB [Vibrio orientalis
           CIP 102891]
 gi|260937231|gb|EEX93220.1| aerobic respiration control sensor protein ArcB [Vibrio orientalis
           CIP 102891]
          Length = 783

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 157/377 (41%), Gaps = 23/377 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +E    T +      ID   + +     +G     N A   L   +E++L   T  
Sbjct: 144 EKTQVELAERTAL--LRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKESQLVGLTPW 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
              +   ++   ++D            D++  + +  LE         E   +P  +   
Sbjct: 202 DVYSKEVAQQIVDTDQKVFS-------DNQALTYEQWLEYPDGRRNYFELRKVPFYSKDG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
               +        ER      E+L KA   K +F+  +S+ELR+PL  I+G + +L  ++
Sbjct: 255 RHLGLVGFGRDITER--KRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTQ 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +     +Q  +++ I+ S+  L N+ NDI+D+   D   ++L  S +   + + E++   
Sbjct: 313 M---TQEQRSHMQTINVSAITLGNIFNDIIDMDKFDRRKLELFPSALNFEEFVAEMESIS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--- 714
           A    +  +R  +     L +    D  RL Q+   ++SNAM F+ +G  V+  ++    
Sbjct: 370 ALMASQKGLRFDLERLSDLPTGIEVDATRLRQVLWNLISNAMKFTKEGGVVMTVSSEVID 429

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGH 771
           ++   I  ++++G  IPE     +F  +             G G+GL++ +  IN+  G 
Sbjct: 430 EHAHIIMEIEDSGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGD 489

Query: 772 VSISSSDEGVTTINCRI 788
           +++SS +   +T    I
Sbjct: 490 ITVSSEEGFGSTFTVTI 506



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +IE R+    A  R  ++  + +E+ +      +L+   ++ +   D+   L+++R+  G
Sbjct: 118 EIEERIKAEEA--REEAMKDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAEG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVS 267
                N + ++ T   G    + +G +   ++ +E+ ++++ +        +    E   
Sbjct: 176 VFSGCNRAMEELT---GKKESQLVGLTPWDVYSKEVAQQIVDTDQKVFSDNQALTYEQWL 232

Query: 268 TLEHGNNKSYKIVRVL------NSFGEAGIAIDVSKEITVNDQLTH 307
               G    +++ +V          G  G   D+++     + L  
Sbjct: 233 EYPDGRRNYFELRKVPFYSKDGRHLGLVGFGRDITERKRHEESLEK 278


>gi|229158276|ref|ZP_04286343.1| hypothetical protein bcere0010_44540 [Bacillus cereus ATCC 4342]
 gi|228625234|gb|EEK81994.1| hypothetical protein bcere0010_44540 [Bacillus cereus ATCC 4342]
          Length = 484

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVAVSIDNNKVIVKVMDNGSGIEFDTLPYIFERFYRAEQSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  +  HGG +   S     T+I   +
Sbjct: 444 LGLAIAKQIVEEHGGEIWAESELGKGTSIFFSL 476


>gi|255941286|ref|XP_002561412.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586035|emb|CAP93776.1| Pc16g11060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1025

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 119/239 (49%), Gaps = 12/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+P+  IIG + L   +    L +     +  +   + 
Sbjct: 508 REAAELANRSKSDFLANMSHEIRTPMNGIIGLSSLALDT--DDLQAPVRDTLNMVHNLAI 565

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +  +   L   +  V ++++ + +E  + +    DG++ 
Sbjct: 566 SLLTIIDDILDISKIEANHMIIEKTPFSLGATVFSVLKALSVETNEKALGLVYTVDGEVP 625

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSI 730
              + D  RL Q+   ++ NA+ F+  G   V +K A+D+        F FSV + G  I
Sbjct: 626 DYLIGDAYRLRQVMLNLVGNAIKFTDHGEIRVTVKHAQDDKCASDETAFQFSVSDPGIGI 685

Query: 731 PEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            E     +F++F        RR  G GLGL+I +  ++L GG + ++S+    +T +  
Sbjct: 686 DESKIGLIFDKFQQADGSMTRRFGGTGLGLAISKRLVSLMGGDIWVTSNVGEGSTFSFT 744


>gi|254421196|ref|ZP_05034914.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188685|gb|EDX83649.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 858

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/397 (21%), Positives = 151/397 (38%), Gaps = 44/397 (11%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +       L       +    EG+    P G+I  SNPA   +       L+ G  + ++
Sbjct: 468 EARDSLKRLSHQNELILKAAGEGIYGIDPKGQIVFSNPAAAKILGYPNAALA-GKFMHDL 526

Query: 484 AATCSRYYNESDGWD--LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                   +        +F  +               +  S   +EY    +  +   + 
Sbjct: 527 LNPTKPQGDRYRWQQSPIFNTLRYGQTHHVTGDFFERQDGSRFPVEYVSTSIRESGNTIG 586

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            V V   +   +A           D +K+ F+  VS+ELR+PLT+I     LL  S++  
Sbjct: 587 AVVVFQDITERQA----------VDSMKDEFIAVVSHELRTPLTSIRAALGLLAQSQIEI 636

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
             +KQ + +E  S+++  L+ LVNDILD+  +  G + LN     L+ ++ +    +   
Sbjct: 637 SPAKQQRMIEIASSNTNRLVRLVNDILDVERIKLGKIVLNKQICNLSTIITQATDEMRAM 696

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
               +I +   +         D  +++Q  + +LSNA+ FS   STV + A +   D   
Sbjct: 697 ADNRSIHLS--ASSLSIELWVDPDKIIQTIANLLSNAIKFSPVNSTVEISAQQIRSDDVS 754

Query: 719 ------------------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RR 752
                                    +  VK+ G  IP+D  +++F +F       +  + 
Sbjct: 755 RIQKHLSAKGKSAIEAGLEIGESVLLVMVKDAGRGIPKDKLEAIFEQFEQLNTSDEAHQG 814

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           G GLGL+I  S +  H G +   S     +T    +P
Sbjct: 815 GTGLGLAICRSIVQRHHGEIWAQSELNSGSTFYFTLP 851



 Score = 44.9 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 65/210 (30%), Gaps = 28/210 (13%)

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG-NNKSYKIVRVLNSFGEAGIA 292
           Q    E R +   +      +S   +    + +  L      +  +            ++
Sbjct: 395 QAHAWEPRDIGLVQDLADRFASVIYQTQLYQKIQLLNADLEQRVLERT-AELQATNQHLS 453

Query: 293 IDVSKEITVNDQLTHTYEILHNLT-----------VAIAIFDQNRYLQFHNRSFVELWEI 341
            ++++       L    + L  L+             I   D    + F N +  ++   
Sbjct: 454 QEIAERERALAALQEARDSLKRLSHQNELILKAAGEGIYGIDPKGQIVFSNPAAAKILGY 513

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHK---DTWHLPNGQ 398
             A LA    +D L          P+   ++  +  IF+  +  +TH    D +   +G 
Sbjct: 514 PNAALAGKFMHDLL------NPTKPQGDRYRWQQSPIFNTLRYGQTHHVTGDFFERQDGS 567

Query: 399 TLHVIVTSNPRG------GTIWMFENLTVQ 422
              V   S          G + +F+++T +
Sbjct: 568 RFPVEYVSTSIRESGNTIGAVVVFQDITER 597


>gi|115391627|ref|XP_001213318.1| hypothetical protein ATEG_04140 [Aspergillus terreus NIH2624]
 gi|114194242|gb|EAU35942.1| hypothetical protein ATEG_04140 [Aspergillus terreus NIH2624]
          Length = 1891

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 15/295 (5%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
            T      K       L+    +E S      A    T  ++ D    ER L +  + L  
Sbjct: 1144 TEIRLRSKGGDFRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNN 1203

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
              E K  F  ++S+E+R+PL  I+G    +  ++   L++ Q + ++ I  SST L  LV
Sbjct: 1204 QMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQ---LDTDQRRMLDTIQNSSTNLRELV 1260

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
            ++ILD++ V+AG M L  S   +  ++ +V  ++A++  +  + I  + D       + D
Sbjct: 1261 DNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVASRAIDKGLEINYLMDVDVPPMVIGD 1320

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI---------FSVKNNGSSIPEDM 734
            R R+ Q+   ++ NA+ F+++G   I  +       +         F V + G       
Sbjct: 1321 RFRIRQVLINLVGNAVKFTAQGEIHICCSIYHEPTAVTKETELLLNFDVVDTGKGFSARD 1380

Query: 735  CKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             + +  RF         Q  G GLGL + +  + +HGG ++ SS +      +  
Sbjct: 1381 AERLMQRFSQLGQNGSQQHAGSGLGLFLSKQLVEMHGGKLTPSSKEGQGAKFSFY 1435


>gi|30260804|ref|NP_843181.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47525929|ref|YP_017278.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183642|ref|YP_026894.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|65318076|ref|ZP_00391035.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165872713|ref|ZP_02217342.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167635201|ref|ZP_02393517.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167640886|ref|ZP_02399144.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170689022|ref|ZP_02880222.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170708472|ref|ZP_02898914.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177652843|ref|ZP_02935216.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190568579|ref|ZP_03021485.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227816480|ref|YP_002816489.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229602121|ref|YP_002865248.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254684273|ref|ZP_05148133.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254722077|ref|ZP_05183866.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254738738|ref|ZP_05196441.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254742050|ref|ZP_05199737.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254754963|ref|ZP_05206997.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254762306|ref|ZP_05214150.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30254253|gb|AAP24667.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47501077|gb|AAT29753.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177569|gb|AAT52945.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164711574|gb|EDR17122.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167511106|gb|EDR86494.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167529460|gb|EDR92211.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170126593|gb|EDS95478.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170667007|gb|EDT17770.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172081877|gb|EDT66946.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190560373|gb|EDV14352.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227007430|gb|ACP17173.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229266529|gb|ACQ48166.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 463

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELSSSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKETTS 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 267 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSQIHISVIEENKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITMEDEGEGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFTISLPS 455


>gi|152986162|ref|YP_001348679.1| putative two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150961320|gb|ABR83345.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 868

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 108/673 (16%), Positives = 229/673 (34%), Gaps = 74/673 (10%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            ++  + +     +    +            +S+       D    I+  N  ++     
Sbjct: 70  QAMAELRASNQLLSDARLRAETAHQHLLDAIESISDAFVLFDGQRRIVLFNERFR----A 125

Query: 229 EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFG 287
                +  IG   +  +     R       E+   +  +     + +  ++  R     G
Sbjct: 126 LWANSRARIGPGMRQAELRRLARSGGLIVEEQRGGDEQTLYRLRDERWLRMSERPTRDGG 185

Query: 288 EAGIAIDVSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
            A +  DV++         E  +  +       + NL+  +A+   +  L+  NR F+EL
Sbjct: 186 LAVLYTDVTEIKLSETARREQALAQKSHLLQRAVDNLSQGVAMVGADGTLELWNRRFLEL 245

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
             +  A +  + +  E++         P   + +     +               L +G+
Sbjct: 246 CGL--APIGGHRAFAEVMAESELPLITPCSRDAQGAPRAVLEQ-----------RLFDGR 292

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            L +   + P GG +  F ++T +           +      D +   +A    +   + 
Sbjct: 293 VLEIRTHALPTGGFVNTFTDITERYRHAETLRASERWIRLITDQVPALIAYLSDELVYEF 352

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
           +N  +   ++     +  G ++R++         E       A    +F+    +L G  
Sbjct: 353 TNKVYEQWYRWPSGSML-GRNLRDVHGAEHCRRLEPYFERALAGESVTFEIAETALSGQE 411

Query: 519 ELLSDSVL-----EYSIIPL-----------PNAQTMLTFVNV----------------- 545
             +  S +     +  ++ L             A+ +                       
Sbjct: 412 RYMQRSYVPNRQADGRVVGLFVLIRDITERRRTAEALHQAYQNLEQRVRERTAELTSLND 471

Query: 546 ------TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                  +  + E  L E      +A+  K  F+  VS++L  PL     FT  L+    
Sbjct: 472 QFKREIHERSQVEARLREAKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALQER-- 529

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           G +       V  IS S   + NL+  ++D++ +DAG+++ + +   + +LL  +     
Sbjct: 530 GGVGQGNEALVNNISHSLEDVENLLGTLVDISKLDAGVIRPDIAPFEIGELLGNLAAEYR 589

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                  +R++ ++ G L    +D+Q L +I   +LSNA+ ++ +G  V+L   R     
Sbjct: 590 QVAVSEGLRLEFVACGAL--VRSDQQLLARILRNLLSNAIRYTPRG-RVLLGCRRQRQSL 646

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              V + G  I  D    +F  F         Q RG+GLGL+IV+    + G  V + S 
Sbjct: 647 SIEVWDTGVGIAADKLGEIFQEFKRGELQRSQQDRGLGLGLAIVDKIARMLGHRVRVGSR 706

Query: 778 DEGVTTINCRIPS 790
               +     +P 
Sbjct: 707 PGKGSCFAIEVPL 719


>gi|293405824|ref|ZP_06649816.1| hybrid sensory histidine kinase [Escherichia coli FVEC1412]
 gi|298381573|ref|ZP_06991172.1| hypothetical protein ECFG_01307 [Escherichia coli FVEC1302]
 gi|291428032|gb|EFF01059.1| hybrid sensory histidine kinase [Escherichia coli FVEC1412]
 gi|298279015|gb|EFI20529.1| hypothetical protein ECFG_01307 [Escherichia coli FVEC1302]
          Length = 1127

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  I       D+   +   ++ ++GS
Sbjct: 745 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVNIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|237756786|ref|ZP_04585277.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691052|gb|EEP60169.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 337

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 133/360 (36%), Gaps = 40/360 (11%)

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           ++    +D+L EGV V   +  I   N   +    T +     G H + +      Y   
Sbjct: 14  EILISFLDYLKEGVIVVDENKNILFVNRFAQRFLNTPDYE---GKHFKEVINDNYLYSII 70

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQTMLTFVNVTDSVRAE 552
           S  +D    +  + D   K L     +    ++    I P                    
Sbjct: 71  SHDYDKDTKLEVNIDSS-KYLVNVYHIKGKKIIHLQDITPFEI----------------- 112

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
                         + K  FV +VS+EL++P++ +    + ++       +S   ++V+ 
Sbjct: 113 ------------YKQAKKDFVSNVSHELKTPISVLKSAMETIEDEIK---DSNILKFVDM 157

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
                  + +L+ND+L LA +++    +     +L   + ++ + +     + NI++K  
Sbjct: 158 AKKRINQMDSLINDLLILARLESQEDLVKKKKYLLRKQVEDIFEDLQHLTKDKNIKLKNN 217

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                    AD Q+L      ++ NA+ ++ +   V + A  D      SV + G  IP 
Sbjct: 218 IPKNF-EVYADEQKLSIALKNLIENAIKYNVQNGIVEVNAKTDGKYDTISVIDTGIGIPP 276

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    VF RF        R   G GLGLSIV+     H G V + S     +    +IP 
Sbjct: 277 ESIPLVFERFYRVDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESQVGKGSRFYIKIPK 336


>gi|229016645|ref|ZP_04173582.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273]
 gi|229022860|ref|ZP_04179380.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272]
 gi|228738395|gb|EEL88871.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272]
 gi|228744635|gb|EEL94700.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273]
          Length = 466

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 130/291 (44%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +      LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 LAMILITVWIGRKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   +  E  +RI    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYELQFIEKKLRISTNLNPEII- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +I+   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDDDRMQQVLHNVLDNAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDTEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++H G   I S     TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHDGEWRIESEKGKGTTVIIKL 457


>gi|170025068|ref|YP_001721573.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis YPIII]
 gi|169751602|gb|ACA69120.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis YPIII]
          Length = 957

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 361 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 416

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 417 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 457

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 458 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 514

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 515 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 574

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 575 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 633

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 634 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 693

Query: 784 INCRIPS 790
              RIP 
Sbjct: 694 FAIRIPL 700


>gi|123401570|ref|XP_001301889.1| ATPase [Trichomonas vaginalis G3]
 gi|121883123|gb|EAX88959.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 1378

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/518 (18%), Positives = 201/518 (38%), Gaps = 38/518 (7%)

Query: 289  AGIAIDVSKEITVNDQLTHTYEILH--NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
             G A +  + +   ++L  T + L   ++T ++  +  +           +    +   +
Sbjct: 630  VGFAFNTDEAVKTREKLQMTGKGLQLASVTSSLIFWSFDLITGTVMPLLQQPTIWETLSV 689

Query: 347  ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY----KSSETHKDTWHLPNGQTLHV 402
                   + L+F+    K   +      K+     +    +  +  K  WH        +
Sbjct: 690  DPQTKFFKFLDFIHPDEKEAIETTLTDLKDEKTREWTGECRILKYGKYEWH-------RI 742

Query: 403  IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPA 462
            I     +        +++ Q +   ++    K++                 G++ +    
Sbjct: 743  IFAIAKQHFVHAFAASISSQKETAKQFADNCKIRDIIFSS-----------GKLTVWKYF 791

Query: 463  FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
               L  TE  RL PG  I  +      + N     ++ A          ++ +     +S
Sbjct: 792  DDDLPVTEHTRLIPG--IATVVRVNRTFVNTCMAPEVAAVFREKIRQTIETNEVMEFKVS 849

Query: 523  DSVLEYSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            +    YSI       + Q +   ++VTD  RA + L E+ +   +A++ K  F+ ++S+E
Sbjct: 850  EDDRFYSIRGKYQPTSKQVVGICIDVTDVERANQELEEQRKIAVEANKQKTLFLANMSHE 909

Query: 580  LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
            +R+P+  I G  D++     G +  +Q   V+ + + S  LL L++D L+L+ ++ G M+
Sbjct: 910  IRTPMNPIFGLLDIIAQ---GEITGEQRLLVDTMRSLSFQLLKLLDDTLNLSKIEQGDME 966

Query: 640  LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
            +N +T      +     + A++  ++ I+  V S  K       D   + QI + + SNA
Sbjct: 967  MNVATFDFWAAIEPAIVASASRARKDGIKFIVRSSPKFPLKINHDVHLIQQILNNLFSNA 1026

Query: 699  MDFSSKGST---VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRG 753
            + F+ KG     V      D      +V + G  I  D  K +F R+            G
Sbjct: 1027 LKFTKKGFIELAVSWAEEEDQEVIRIAVSDTGIGISYDQQKIIFQRYFQADPSNPVHYGG 1086

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             GLGL++V+  ++  GG + + S     +T    IP +
Sbjct: 1087 SGLGLALVQEIVHFIGGSLRLESEPGKGSTFLIDIPIE 1124


>gi|166712854|ref|ZP_02244061.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 916

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 12/248 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +    K E   +A   K  F+  + +E+R+P+T ++G ++LL  +   SL+  Q  Y 
Sbjct: 533 AWQLAVHKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDITQRSYT 589

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +   LL LVND LDLA +++G ++L+     +  LL E++  +A    +  +R  
Sbjct: 590 ESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLLAELEALMAPLAQDRGLRFS 649

Query: 671 VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
           +   G LG      D  R+ QI   +L+NA+ F+ +G  V LK           F V + 
Sbjct: 650 LEI-GLLGDITASGDSTRIRQILLNLLNNAIKFTERG-VVGLKLTTLGSYQGLRFEVADT 707

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I  +    +F RF             G GLGL+I +      GGH+ + S     T 
Sbjct: 708 GPGINAEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTR 767

Query: 784 INCRIPSK 791
               +P +
Sbjct: 768 FVVDLPLR 775


>gi|329889991|ref|ZP_08268334.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845292|gb|EGF94856.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 595

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 10/241 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L    +    A+E K++F+  +S+ELR+P+  ++G   LL  ++   L   Q +Y+  
Sbjct: 193 EELEAARDKADAANEAKSNFLGVISHELRTPMNGVLGAAQLLSATR---LEGAQREYLAI 249

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S   LL+L+NDILD+  ++AG M      + L DL   +      +     +     
Sbjct: 250 IRNSGDNLLSLLNDILDMTKIEAGRMNFEAVDVNLEDLHRRIVGPFEAQAEAKGLNFIAE 309

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNG 727
            +G + + V  D  R+ Q+   +LSNA+ F+ +G+   +    + +     F F V ++G
Sbjct: 310 FEGDVPAVVRGDPLRVCQVVQNLLSNAVKFTDQGAVRFVTRGRRVSERRVAFEFVVIDSG 369

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           S I +D    +F  F        RR  G GLGL+I     N+ GG +S++SS    +T  
Sbjct: 370 SGISDDDMDQLFQPFTQVDASSTRRFGGTGLGLTISRRLANIMGGEISVTSSLGEGSTFT 429

Query: 786 C 786
            
Sbjct: 430 F 430


>gi|320185069|gb|EFW59849.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella flexneri CDC 796-83]
          Length = 1127

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 745 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|237808038|ref|YP_002892478.1| Cache sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500299|gb|ACQ92892.1| Cache sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 845

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 1/236 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL    E    A++ K  F+  +S+ELR+PL  I+GF  LL+          +  Y++ I
Sbjct: 461 ALRRAKEDADSANKTKGLFLSSMSHELRTPLNAILGFGQLLQKDDNKLSVRDRKDYIDEI 520

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             + T LLNL++D+L+L+ +++    L    +    ++ E  + +     +  + +    
Sbjct: 521 MTAGTHLLNLIDDVLNLSHIESKGSLLKIEPVDAIRVIKECNEMLRPMAVKEQLSLSAEL 580

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              +   +AD  RL Q+   +LSNA+ ++     + + A   +     SV+++G  I  +
Sbjct: 581 PETMVLVMADSTRLRQVLINLLSNAIKYNYLNGKINVSAEIKDKYLRISVRDSGRGISPE 640

Query: 734 MCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F  F    H     +G G+GLSI +  I    G +  SS  +  +     +
Sbjct: 641 KQTELFTPFNRLGHETSGIKGTGIGLSISKQLIESMNGRIGFSSQWQKGSVFWIDL 696


>gi|160939833|ref|ZP_02087180.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437267|gb|EDP15032.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC
           BAA-613]
          Length = 465

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 149/331 (45%), Gaps = 11/331 (3%)

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSV 525
           +  +  L        I       +  +    L A + +     R   S+   L  +S +V
Sbjct: 134 EYSDMVLRLAVPYSGIQEYLPMLFPAAILSFLMAMVCSVVTTRRFVSSVTRPLRDISKAV 193

Query: 526 L----EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
           +    +Y+ +   + Q     V     +   + + E    + K  +I+  F  + S+EL+
Sbjct: 194 MKVKGDYTELQFESCQYPEINVIAGTIMNMSKDVKEYLSQIEKEKQIRQEFFSNASHELK 253

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +P+T+I G+ +LL++  +   +  +  + + I   +  +  L+NDIL ++ +++   ++ 
Sbjct: 254 TPITSIQGYAELLESGMIQD-DGLKLDFAKRIKKEAAGMTGLINDILMISRLESMDAEVM 312

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +S + ++ LL E+  S+        + + V  D K     A+ Q++ ++F+ + +NA+ +
Sbjct: 313 FSDVRISVLLQEIMDSLKPLAASCQVFLHV--DCKPLCIRANLQQMKELFTNLATNAIKY 370

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLS 759
           +  G  V +       D +  VK+NG  IP++    +F RF         ++ G GLGLS
Sbjct: 371 NRPGGQVWITVGEQGDDMLVRVKDNGVGIPKESLDRIFERFYRVDKGRSRKQGGTGLGLS 430

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           IV+  +N + G + ++S  +  T     IP 
Sbjct: 431 IVKHIVNFYHGTIHVTSELDKGTEFTVTIPL 461


>gi|39726389|gb|AAR30137.1| putative histidine kinase HHK2p [Gibberella moniliformis]
          Length = 2072

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 19/247 (7%)

Query: 562  LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            L++A E K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I  S+  L+
Sbjct: 1402 LKEAMETKGRFLSNMSHEIRTPLIGISGMVSFLQDT---TLNEEQLDYTNTIQTSANSLI 1458

Query: 622  NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
             ++NDILDL+ VDAG+MKL Y       ++ +V + ++T      + +  + +  + ++V
Sbjct: 1459 MIINDILDLSKVDAGMMKLKYEWFHTRSIIEDVNELVSTMAIAKRLELNYLVEADVPAWV 1518

Query: 682  -ADRQRLLQIFSKILSNAMDFSSKGST-----VIL----KAARDNGDFIFSVKNNGSSIP 731
              D+ R+ Q+   +  NA+ F+S+G       V +        +     FSV + G    
Sbjct: 1519 KGDKVRIRQVLLNVTGNAIKFTSEGEVFSRCRVYVAEGSHVDENEIMLEFSVTDTGRGFS 1578

Query: 732  EDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR-- 787
            ++  + +F  F     +   Q  G GLGL I      LHGG ++  ++    +T      
Sbjct: 1579 KEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGGSMTGRATLGKGSTFTFTAR 1638

Query: 788  --IPSKE 792
              +P+ +
Sbjct: 1639 FGLPTAD 1645


>gi|33240871|ref|NP_875813.1| two-component sensor histidine kinase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238400|gb|AAQ00466.1| Sensory protein [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 690

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 149/390 (38%), Gaps = 43/390 (11%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +       Q   I  +++G  +    G+I L NP  R L++ E   L     +  +   
Sbjct: 290 EELRAAQVKQQSLIATMADGAILLNEKGKIVLVNPTARRLFRWEGRNLESQDLLDELPEL 349

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            +   + +       +I+ +  +  +    T E      +    +   +  T+       
Sbjct: 350 IANELHPN-----ITSILNNLCESDELRCSTGEPARTLRIVLQSVRDSSGSTLKGVAITI 404

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             +  E  L          + I+  F+ +VS+ELR+PL NI  + + L        + ++
Sbjct: 405 QDLTREVEL----------NAIQRRFISNVSHELRTPLFNIKSYVETLHDLDDKLDHKEK 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            +++E  ++ +  L  LVND+LDL+ ++ AG +  N+  I L   +++  ++      + 
Sbjct: 455 MEFLEVANSETDRLTRLVNDVLDLSKIETAGNV--NFEAINLAPAIDQTVRTYRLNAEDK 512

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------- 717
            + I    +  +   + +   LLQ+   ++ NA+ FSS G  ++L+A             
Sbjct: 513 KVEISQEIEENMELILGNWDLLLQVLDNLIGNALKFSSAGGKIVLRAYTWPDTCITSSPK 572

Query: 718 ----------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSI 760
                                + + G  I ED    +F RF    +      G GLGLSI
Sbjct: 573 IDKKDAPSCEIIYPLPRLRIEIGDTGCGISEDSQLRIFERFYRVENDVHTEVGTGLGLSI 632

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
           V   I   G ++ + S     TT    +P 
Sbjct: 633 VREIIEKLGSNIRMVSIPGIGTTFWFDLPL 662



 Score = 40.3 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 17/182 (9%)

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTV 317
            + NF   +     G     +++   N+        D +    +         ++  +  
Sbjct: 251 AKGNFKSRIILPMSGE--LGELLDGFNNMASQLEDYDAANIEELRAAQVKQQSLIATMAD 308

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN 377
              + ++   +   N +   L+  +   L +    DEL E + +        N  +   N
Sbjct: 309 GAILLNEKGKIVLVNPTARRLFRWEGRNLESQDLLDELPELIANEL----HPNITSILNN 364

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETKYNT 431
           +    +S E    T      +TL +++ S          G     ++LT +V+L      
Sbjct: 365 LC---ESDELRCSTGEPA--RTLRIVLQSVRDSSGSTLKGVAITIQDLTREVELNAIQRR 419

Query: 432 LV 433
            +
Sbjct: 420 FI 421


>gi|37675989|ref|NP_936385.1| sensor kinase VieS [Vibrio vulnificus YJ016]
 gi|37200529|dbj|BAC96355.1| probable sensor kinase VieS [Vibrio vulnificus YJ016]
          Length = 1243

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/356 (21%), Positives = 146/356 (41%), Gaps = 13/356 (3%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           + I  L+  V +    G++ LSN                   I+N A   S   +  +  
Sbjct: 575 QIIQELNNKVFIHDDKGQLVLSN------CSEYLKGNCTNCQIKNAATQISLVGDFEEVQ 628

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            +          +  +    +E +         +       +    +VT     E AL  
Sbjct: 629 QVLRGKRIKEYSQTVNCDLQIEHIYRERKAIRSLDHRKQFVLTVLQDVTAQKEREAALIA 688

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                + A + +  F+  +S+ELR+PL    G  DL+ T    S + +  + V     S 
Sbjct: 689 AQHEAQSAVKARERFLATMSHELRTPLAATYGLLDLVATH---STSERDKELVLRAKQSL 745

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGK 676
             L  LV+++LD + ++AG ++++ +   L  LL++  +    K +   +   V I    
Sbjct: 746 NHLNLLVDEVLDYSKLEAGELQIHPAKNELLRLLSQTLRGFEAKANSKGLDYTVNIIPFS 805

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L   + D  R  QI S ++SNA+ F+ +G  + L A       + ++K+ G  + ++   
Sbjct: 806 LRWAMIDDLRFNQIVSNLISNAIKFTEQGD-ITLTAQVVKERLLLTIKDTGIGMTQEQLA 864

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           ++F  FV       R   G GLGL+IVE  +   GGH+++ S+    T ++  +P 
Sbjct: 865 NIFKPFVQADDSITRQFGGTGLGLAIVEQLLKQMGGHIALHSALNVGTQVDIELPL 920


>gi|282882092|ref|ZP_06290733.1| sensor histidine kinase [Peptoniphilus lacrimalis 315-B]
 gi|281298122|gb|EFA90577.1| sensor histidine kinase [Peptoniphilus lacrimalis 315-B]
          Length = 468

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 5/252 (1%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +     + L   +E + K ++IKN F+  +S+ELR+PLT+I G+  +LK SK   
Sbjct: 217 NWEDDEIGELAKTLNTMSEEILKKEQIKNDFISSISHELRTPLTSIKGWAVVLKDSKGQ- 275

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
                S+ +  I   S  L  +V ++LD +   +G M L      +   + +V + +  +
Sbjct: 276 -EDIMSEGLTIIENESDRLSKMVEELLDFSRFISGRMSLEKELFDIGQTVRDVCKQMNPR 334

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
            + N I  +          + D  R+ Q+   I+ NA+ F+S+   V +++  +N +F+ 
Sbjct: 335 ANSNKIDFQTEILETPCVTIGDENRIKQLLINIVDNAIKFTSENGWVKVQSFDENNNFVI 394

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            V +NG  + +   + V  +F    H       GLGLSI +  + LH G + I S     
Sbjct: 395 LVSDNGCGMNKKDLEHVKEKFYKGKHSKSH--SGLGLSISDEIVKLHNGSLDIFSELNIG 452

Query: 782 TTINCRIP-SKE 792
           TT+   IP  KE
Sbjct: 453 TTVKITIPIIKE 464


>gi|238062152|ref|ZP_04606861.1| PAS/PAC sensor hybrid histidine kinase [Micromonospora sp. ATCC
           39149]
 gi|237883963|gb|EEP72791.1| PAS/PAC sensor hybrid histidine kinase [Micromonospora sp. ATCC
           39149]
          Length = 453

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 142/283 (50%), Gaps = 3/283 (1%)

Query: 509 DERKSLQGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           DE +S +  L  L++ + E +  ++ L N  T          V     L EK+  LR A 
Sbjct: 168 DEVRSQRDELAELNEELQETNRGVMALYNQLTEELEATNRGVVALYAELDEKSAQLRTAS 227

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           E K+ F+ +VS+ELR+P+T IIG + LL  S    L ++Q + V  I  S+  LL LVND
Sbjct: 228 ESKSRFLANVSHELRAPVTAIIGLSRLLADSASDPLTAEQVRQVGLIRDSAVDLLGLVND 287

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LDLA  ++G ++ N++ + L  +  +++ ++    +   +++ V      G+  +D   
Sbjct: 288 LLDLAKAESGRLEPNWTEVDLRAVFGQLRGTLRALSNRPGVQLVVEDPPPPGTVRSDEVL 347

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   +L N + F+ +G  V L+A   +G +  +V + G+ I  ++ + +F  F    
Sbjct: 348 LAQVLRNLLHNGLKFTERGE-VRLRAEVRDGRWWLAVSDTGAGIAPELHERIFEEFYQVP 406

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +  G GLGLS      +L GG + ++S     +T    +P
Sbjct: 407 GNTRVGGTGLGLSYARRVTHLLGGTLELTSEPGRGSTFTVTLP 449


>gi|188579065|ref|YP_001915994.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
            PXO99A]
 gi|188523517|gb|ACD61462.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
            PXO99A]
          Length = 1150

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 186/471 (39%), Gaps = 32/471 (6%)

Query: 336  VELWEIDLAFLATNPSNDELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             +L  +    +    ++   ++   L      P  +  + W +    +  +S        
Sbjct: 547  ADLQALAERVVGERHAHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAA---- 602

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                 +  +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD
Sbjct: 603  -----SARLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPD 657

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R+   N  ++ L+   +  L  G  + ++    +      +G D+   I       R  
Sbjct: 658  MRLTAWNRRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAG 716

Query: 514  LQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
                 E       V+E     LP    + ++ ++TD  RAERAL + NE L +       
Sbjct: 717  SPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSR 776

Query: 566  -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                  + K  F+  +S+++  PL     F   L+ S     N +Q    E + AS    
Sbjct: 777  EAELAQQSKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAA 834

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              L++ +LD++ +DAG ++        + L++E+    A       +R++V S  +    
Sbjct: 835  EELLDGLLDVSRLDAGGLRPTVEGFDASALMHELAAQYAPVAASRGLRLQVHS--RPIWV 892

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +DR+ L ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F 
Sbjct: 893  RSDRRLLRRVMQNFLANALRYTRQG-RIVLGMRGRGQQVELQVWDTGPGIPEHHMRQIFE 951

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F           +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 952  EFRRYQQPFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1002



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 562 AHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 621

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 622 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 681

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 682 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 740

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 741 GGYVTSYNDITDYKRAERALLDANENLEQ 769


>gi|170726314|ref|YP_001760340.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811661|gb|ACA86245.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1713

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 156/361 (43%), Gaps = 28/361 (7%)

Query: 445  EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
            E + +   +  I ++N   RS  +T+   L        + A      + ++       ++
Sbjct: 908  EVIELISSNLGIVINN--LRSQERTQTLLLETQRQSEELQAQQEELKSSNESLLEQTQLL 965

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
             + ++E K     L++ ++ + E         + +      ++   A+  LT K E L  
Sbjct: 966  KTSEEELKQQSEELKVSNEELEE---------KQVFLKRQKSEIEAAKTDLTIKAEELAL 1016

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A + K+ F+ ++S+ELR+PL +++     L  +K   L+  + +  + I      LL L+
Sbjct: 1017 ASKYKSEFLANMSHELRTPLNSLLLLAKGLADNKSQHLDETEVEDAKIIFDGGNNLLCLI 1076

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
            NDI+DL+ V+AG + ++   + +  L   ++Q       +  + + +  D KL  +  +D
Sbjct: 1077 NDIMDLSKVEAGKLSIHIEEVSIAVLCRNLRQVFDPIAKDRELVLNIEVDDKLPSTVRSD 1136

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------------DNGDFIFSVKNNGSSI 730
              R+ QI   +LSNA+ F+  GS V LK                      FSV + G  I
Sbjct: 1137 GHRVEQILRNLLSNALKFTETGS-VTLKIGYVAPNTLFSHSSLDAETALSFSVVDTGIGI 1195

Query: 731  PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            PE+  +++F  F        R   G GLGL+I      L GG + + S  +  +T    +
Sbjct: 1196 PENKIQAIFEAFQQQDGSTSRKYGGTGLGLTIARELTRLLGGEIQLQSVLDEGSTFTLYL 1255

Query: 789  P 789
            P
Sbjct: 1256 P 1256



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 99/310 (31%), Gaps = 36/310 (11%)

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L     I+      I     +  +   N +  E+++     L     N + L        
Sbjct: 506 LNLNRGIVDTAVDGIISIKDDGTILSVNSATEEMFKYSAESLIGQ--NIKFL-------- 555

Query: 365 LPEQLNWKTWKENIFSVYKSSETHK------DTWHLP-NGQTLHV-----IVTSNPRGGT 412
           +PE   + +      S YK++   K      +   L  +G T  +      V        
Sbjct: 556 MPEP--YHSEHSTYLSQYKATGNKKIIGKGREVMALRSDGTTYPIYLSVGEVKQGEETLY 613

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
                ++T Q   E        +    +D   + +     DG I   N A   L++ +  
Sbjct: 614 TGFIRDITQQKKFEQDIIRREALNRGMVDTCLDAILSITTDGVIIACNNAAELLFQYKSE 673

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            L  G  +  +  +     ++    +     I     + + + G  +  +   +  +I  
Sbjct: 674 EL-IGKKVNILMPSPFTDEHDEYLKNYLTTGIKKIMGKGREVTGLKKDGTTFPIFLTIGE 732

Query: 533 LPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
           +   +  +    V D     + E  L   NE L K +E+K+  V  ++ EL        G
Sbjct: 733 VEQEEGTIFTGFVRDITKEKQYEADLQRTNEDLMKQNELKSQ-VSRIN-EL------TQG 784

Query: 590 FTDLLKTSKL 599
            +DL+  +  
Sbjct: 785 ASDLMAMADE 794


>gi|30020096|ref|NP_831727.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29895646|gb|AAP08928.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 348

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 109 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 166

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 167 IETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 225

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+ ++           ++++G  I E
Sbjct: 226 -DLEKVYVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISE 284

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    R+P+
Sbjct: 285 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMPN 344

Query: 791 KE 792
            E
Sbjct: 345 HE 346


>gi|95930793|ref|ZP_01313525.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95133141|gb|EAT14808.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 591

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 20/290 (6%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE-------RALTEKNEALRK 564
           + + GT +++ ++VL  S+     + T+     ++   +AE       +AL    E    
Sbjct: 155 EQMTGTTKIVIETVL--SMYERLASHTVQLIKEISRRKQAEKKLLDTHQALCLAKEGAEV 212

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+ F+ ++S+E+R+PL  +IG   LLK      L  KQ+  V+ I  +S  LL+++
Sbjct: 213 ANQTKSVFIANISHEIRTPLNAVIGMVHLLKR---DGLTEKQAFRVDKIEDASQHLLSVI 269

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           ND LDL+ V+AG + L    + L  L+ E    +  ++    + +KV  +   G    D 
Sbjct: 270 NDTLDLSKVEAGKLVLESVPLNLPSLVQETISMLDGQIEAKGLDLKVECENLRGRLHGDP 329

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVF 739
            RL Q+    L+NA+ F+ +G+ +  +A+              V + G  I  +    +F
Sbjct: 330 TRLKQMLLNYLTNAIKFTEQGA-ITFRASVTEESPSVSLLRIEVTDTGIGIATEQLPLLF 388

Query: 740 NRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           + F        R   G GLGL++      L  G   + S+    +T    
Sbjct: 389 SNFAQAETSTTRKYGGTGLGLALTRRLAELMEGEAGVQSTVGLGSTFWFT 438


>gi|325921205|ref|ZP_08183069.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548312|gb|EGD19302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 894

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 9/255 (3%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADE-IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                    + E  L ++ + L +     K++F+ ++ +E+R+P+T ++G ++LL  +  
Sbjct: 488 WAWRRRVRRQQEWILAQQRQQLAEQASVAKSNFLANLGHEVRTPMTGVLGMSELLLAT-- 545

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             LN+KQ  +V+ I  +   LL LVND LDLA ++AG ++L         L  E+   + 
Sbjct: 546 -PLNAKQRSHVDAIRKAGAHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELADFMH 604

Query: 660 TKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                  +R    +        + D  R+ QI   +L NA+ FS +G  V L A++    
Sbjct: 605 PISEARGLRFHYRNQLPAQLVVLGDATRVRQILINLLGNAIKFSERGE-VSLTASQHGEV 663

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNA---HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             F V+++G  I  +  K +F RF          +  G GLGL+I +       G + + 
Sbjct: 664 LRFKVRDSGPGIGPEQQKRLFQRFEQADGAHTSARYGGSGLGLAICQELTVAMKGTIRVR 723

Query: 776 SSDEGVTTINCRIPS 790
           S     T  +  +P 
Sbjct: 724 SRLGVGTQFSVDLPL 738


>gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2028

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 116/242 (47%), Gaps = 6/242 (2%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            RA     ++ E L   D+ K +F  +VS+E R+PLT I+G  +   +    +L  ++   
Sbjct: 1356 RAYEQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEK--- 1412

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++ +  ++  L  +VN +LD + ++AG  + +Y  + L+ +   +  +  + +    +R+
Sbjct: 1413 LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGLRL 1472

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             V           D +   ++   +LSNA+ ++ +G  + +     +   + +V++ G  
Sbjct: 1473 VVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYEGE-IRVVLRWQDDHAVLTVQDTGVG 1531

Query: 730  IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPE+    VF RF            G G+GL++V+  + LHGG +S+ S+    T    R
Sbjct: 1532 IPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAFTLR 1591

Query: 788  IP 789
            +P
Sbjct: 1592 LP 1593



 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 16/296 (5%)

Query: 511  RKSLQGTLELLSDSVLEYSIIPLPNAQTM-------LTFVNVTDSVRAERALT----EKN 559
            R   + T++ L+    EY + P    + +               +VRAERA         
Sbjct: 722  RAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTVSQLRQAAVRAERAHVEDTLRFL 781

Query: 560  EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASST 618
            E  R+A  ++   +  VS++LRSPLT I    +LL+     G   ++  +  + I  S+ 
Sbjct: 782  EESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSAD 841

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             +  L++D+LDLA++DAG + +      +++L+ + ++       E  +++    +  L 
Sbjct: 842  RMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGLI 901

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCK 736
                D++R+LQ    +LSNA+ F+  G +++L+A  + G  D   SV + G  IP     
Sbjct: 902  -LSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQP 960

Query: 737  SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
             +F+R+     + +R G GLGLSI +  +  HGG + +  +    +T +  +PS +
Sbjct: 961  HIFDRYWHGV-QNKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLPSGQ 1015



 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A     ++ EAL + D  K +F  +VS+ELR+PL  ++G  +         L  KQ +  
Sbjct: 351 AYEEEKKRAEALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEYPLPPKQRERQ 410

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  +   L  LVN +LD A ++AG  + ++    L+ L  E+  +  + M    + + 
Sbjct: 411 EVVHRNGLRLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMV 470

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V       +   D     ++   +LSNA+ F+ +G  V +           +V++ G+ +
Sbjct: 471 VDCPVLPEAVYVDPAMWEKVVLNLLSNALKFTLQGE-VRIALRWLGDRVELTVQDTGTGM 529

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     +F RF  V  A      G G+GL++V+  + LHGG V++ S     +T    +
Sbjct: 530 PEAELPRIFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSL 589

Query: 789 PS 790
           P+
Sbjct: 590 PA 591



 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 124/300 (41%), Gaps = 10/300 (3%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL---TE 557
             AI       R   + T+E L     +Y + P    + ++      D  R  R +     
Sbjct: 1728 RAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDMARVRREVVRNEI 1787

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQSQYV----EY 612
            + + LR++  +++ F+  VS+ELR+P++ +   F  L+++      +    + V    + 
Sbjct: 1788 EKKVLRESVRVRDEFLNLVSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVKAQT 1847

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
                   L  LV  +LD +    G +KL    + L+ + + V +   +K       + + 
Sbjct: 1848 TQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVLTLN 1907

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +   +  +  DR RL Q+   +L NA+ F   G  + +   RD+   + +V ++G+ I  
Sbjct: 1908 APSPVMGY-CDRARLHQLLEGLLDNALKFG-AGKPIEVAVWRDSDHALLTVMDHGAGIEP 1965

Query: 733  DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +  + +F RF          G GLGL I       H G + +  ++ G  T    +P  E
Sbjct: 1966 EDEERIFGRFERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALPLNE 2025


>gi|293410775|ref|ZP_06654351.1| hypothetical protein ECEG_01750 [Escherichia coli B354]
 gi|291471243|gb|EFF13727.1| hypothetical protein ECEG_01750 [Escherichia coli B354]
          Length = 1197

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYQVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGDIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|293415651|ref|ZP_06658294.1| hybrid sensory histidine kinase [Escherichia coli B185]
 gi|291433299|gb|EFF06278.1| hybrid sensory histidine kinase [Escherichia coli B185]
          Length = 1197

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 895

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 123/257 (47%), Gaps = 3/257 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N      +    +       L   N  L + D+ K +F  ++S+ELR+PLT +IG  D L
Sbjct: 183 NRSRYREYALRHELDENRSELEASNLKLVEMDKAKTNFFANISHELRTPLTLLIGPLDRL 242

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           + +       ++ + ++ +  ++  L+ L+ND+L+L  +D+G ++L  +T+ L   L  +
Sbjct: 243 RHNGDQPSAKEREELLDIMQQNAMRLMRLINDLLNLVRLDSGTLQLRPATLELRHYLEGI 302

Query: 655 KQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            +S      E  +       DG   +   DR ++ +I   +L NA+ F+  G  +IL+A 
Sbjct: 303 CRSFYPMASERRLDFTWEIEDGGQPNVNLDRDKVEKILLNLLFNAIKFTPPGGKIILRAR 362

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           RD       V+++G  I  +   S+F+RF        RR  GVG+GL++V     LHGG 
Sbjct: 363 RDGEFLRIEVEDSGQGIAAEELASIFDRFWQAETSSNRRYQGVGIGLALVRDLARLHGGD 422

Query: 772 VSISSSDEGVTTINCRI 788
           V  SS     T +   +
Sbjct: 423 VEASSVQGEGTVMRVSL 439



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 121/340 (35%), Gaps = 38/340 (11%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L       +      R         +   I+T+  DE    Q     L     ++   P 
Sbjct: 557 LDFMMPQVDGIEATRRLREMPSHRGVPIIILTARADEEVKFQA----LDAGATDFLTKPF 612

Query: 534 PNAQTMLTFVN-----------VTDSVRAERALTEKNEALRKA-DEIKNSFVQHVS---- 577
            + + +    N              +VR E+AL +  +   +   + K + +  +S    
Sbjct: 613 SSTELLARCRNLASVYEMQQQIEDRTVRLEKALEQIKQTETQMVQQAKMASLGQLSAGLL 672

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI----SASSTILLNLVNDILDLATV 633
           +E+ +PL        LL+  +LG+    + + +E            + ++V+ + +    
Sbjct: 673 HEVNNPLNFATTSIHLLRK-RLGNSPHPEPELLEKPLTDLHDGIRRVSSIVSSLREFTHP 731

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D     + +  + L   LN   + +     E  I +    +G       ++ +L+ +F  
Sbjct: 732 D----TVRFERVDLRTALNTAIRFVQIPAAE--ITLVQELEGS-PMISGNQNQLMHVFIN 784

Query: 694 ILSNAM----DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +L N++    +   +G  + ++ +          ++NG  I  D    VF+ F +    G
Sbjct: 785 LLQNSVDSLRERGGEGREIRIRCSEVEERVSLVFEDNGMGISPDEIDRVFDAFFTTKKVG 844

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           Q  GVGLGLSI    I  H G +++ S            P
Sbjct: 845 Q--GVGLGLSICHRIIQQHKGSINVESEAGEWARFIMEFP 882


>gi|158340469|ref|YP_001521463.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158310710|gb|ABW32324.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 677

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/414 (22%), Positives = 172/414 (41%), Gaps = 49/414 (11%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP-AFRSLWKTEENRLSPG 477
           +T + + ++    L   Q   +D     V     +G ++  N  A +    + E  +   
Sbjct: 1   MTEKFEADS-LQLLQTWQQTILDSADFIVISTDINGVVQTLNAGALKQFGYSSEEIIGRV 59

Query: 478 THI-----------RNIAATCSRYYNESDGWDLFAAIITSFDDE------RKSLQGTLEL 520
           T I             + +       E+D   L         DE      RK     +  
Sbjct: 60  TPIIFHDSAEIVLRAQVLSKELGRVIEADVETLIVKARMGMADENIWTLIRKDHSQFMVC 119

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK---------------- 564
           LS   L  +   L     +    +VT     E AL   N  L +                
Sbjct: 120 LSVKALRDASGQLK--GFLGIGKDVTAQQETEAALRCLNANLEQLVEERTSQLNTAIETA 177

Query: 565 --ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
             A++ K+ F+ ++S+E R+PL  I+GF+ LL   +   +   Q   ++ I  S   LL+
Sbjct: 178 EIANQAKSKFIANMSHEFRTPLNAIMGFSQLLLRDRR--ITPDQQSRLDVIYRSGEHLLS 235

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV- 681
           LVN+++ L+ ++ G++      + L  L   VK+  + +    +I++++     +  F+ 
Sbjct: 236 LVNEVITLSKIEDGVLTYEPKDVNLYHLCEGVKELFSLQASSKDIQLQLRIAPDVPRFIR 295

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDN---GDFIFSVKNNGSSIPEDMC 735
            D Q+L QI   +L NA+ ++ +GS    V  +  R         FS+++ G  IP+ + 
Sbjct: 296 TDAQKLRQILINLLGNALKYTKRGSVECRVQWRPPRTETLPHHIEFSIQDTGPGIPQHLL 355

Query: 736 KSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +F  FV +     +  G+GLGL I + F++L GG +SI S+++  T ++  I
Sbjct: 356 PKLFEHFVQDPLTRDKFGGIGLGLCICQRFVHLMGGDISIESTEDHGTIVDFYI 409


>gi|301052302|ref|YP_003790513.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374471|gb|ADK03375.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 462

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 107/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELSSSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKENTS 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 267 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSHINISVTEEHKHIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 ITIEDEGEGIPSEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|226944603|ref|YP_002799676.1| hybrid histidine kinase [Azotobacter vinelandii DJ]
 gi|226719530|gb|ACO78701.1| hybrid histidine kinase [Azotobacter vinelandii DJ]
          Length = 642

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 7/248 (2%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++TD    E +L E  E   +A   K++F+ ++S+E+R+P+ +IIGFT+LL  S   +L+
Sbjct: 31  DITDRYTLEASLRETAERAEQAAAAKSTFLANMSHEIRTPMNSIIGFTELLLQS---NLS 87

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
             Q  ++  I  SS  LL L+NDILD   ++ G ++L  +   L  L  +++ S+     
Sbjct: 88  PVQRNHLNTIRQSSRSLLGLLNDILDTTKMEKGGLELERTDFSLKGLAMQIESSLYLGAQ 147

Query: 664 ENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
              + +       +   F  D  RLLQ+ + ++ NA+ F+ +G  V +  + +       
Sbjct: 148 SKRLTLATHYPRDMPEHFQGDPLRLLQVLTNLVGNAIKFTERG-RVDVVFSHEEDMVHVQ 206

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  +      S+F  F        RR  G GLG +I    + L GG + + S    
Sbjct: 207 VRDTGIGMTPQQAASIFAPFTQADASISRRFGGTGLGTTIAHQLVELMGGRIGVESELGR 266

Query: 781 VTTINCRI 788
            +T +  +
Sbjct: 267 GSTFHVYL 274


>gi|45440759|ref|NP_992298.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Microtus str. 91001]
 gi|51595601|ref|YP_069792.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis IP 32953]
 gi|45435617|gb|AAS61175.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51588883|emb|CAH20497.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pseudotuberculosis IP 32953]
          Length = 957

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 361 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 416

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 417 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 457

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 458 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 514

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 515 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 574

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 575 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 633

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 634 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 693

Query: 784 INCRIPS 790
              RIP 
Sbjct: 694 FAIRIPL 700


>gi|301023585|ref|ZP_07187348.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300396952|gb|EFJ80490.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 1197

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  I       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVNIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|269103459|ref|ZP_06156156.1| aerobic respiration control sensor protein ArcB [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163357|gb|EEZ41853.1| aerobic respiration control sensor protein ArcB [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 788

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 141/374 (37%), Gaps = 17/374 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + +       +    N A   L    E  L   T   
Sbjct: 143 REKAQLELAEQSALLRSFLDASPDLIYYRNEKNQFSGCNRAMSELVGKSEKELVGLTPWD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
                 +    ++D       +  +++   +   G       +V E   +P  +      
Sbjct: 203 VYNPELATKIAKTDQRVFDEDVSLTYEQWLEYPDG-----RKAVFELRKVPFYSRSGRRL 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      EA  KA   K SF+  +S+ELR+PL  I+G + +L  S+   
Sbjct: 258 GLMGFGRDITER--KRYEEAQEKASRDKTSFISTISHELRTPLNGIVGLSRMLLESE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L   Q  Y+  I  S+  L N+ NDI+DL   D   ++L    + L + + E+    A  
Sbjct: 313 LTEDQRNYLRTIHISAITLGNIFNDIIDLDKSDRRRLELLPKPLDLPEFITEIGNISALM 372

Query: 662 MHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI---LKAARDNG 717
             +  +R  +    +L   +  D  RL Q+   ++ NA  F+ +G  ++    +   D  
Sbjct: 373 AEQKGLRFDLEQLTQLPKMIEVDGTRLRQVLWNLMGNATKFTKQGGVILSVSCEVEADQA 432

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              F V+++G  IP     ++F  +             G G+GL++    + L  G +++
Sbjct: 433 HIQFEVEDSGIGIPAGELDNIFAMYYQVQQGDDNLHAVGTGIGLAVSRQLVQLMNGDITV 492

Query: 775 SSSDEGVTTINCRI 788
           SS +   +T    I
Sbjct: 493 SSEEGEGSTFTVNI 506



 Score = 45.3 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 79/203 (38%), Gaps = 27/203 (13%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI-----KIEGRVSGSCAFLRILSLDGIY 175
                +LSK   KL +E +S D+    Q    I     +I+ R     A  R L+++ + 
Sbjct: 81  EDSRQRLSKLVTKL-EEMRSRDMQLNKQLQENITKLNQEIDERQKAEEA--RELAMEDLE 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +E+        +L+   ++ +   D+   L+++R++       N +    +E  G   ++
Sbjct: 138 NEVYHREKAQLELAEQSALLRSFLDASPDLIYYRNEKNQFSGCNRA---MSELVGKSEKE 194

Query: 236 AIGESR-KLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIVRVL---- 283
            +G +   ++  E+  ++  +   ++ F E VS           G    +++ +V     
Sbjct: 195 LVGLTPWDVYNPELATKIAKTD--QRVFDEDVSLTYEQWLEYPDGRKAVFELRKVPFYSR 252

Query: 284 --NSFGEAGIAIDVSKEITVNDQ 304
                G  G   D+++     + 
Sbjct: 253 SGRRLGLMGFGRDITERKRYEEA 275


>gi|116071239|ref|ZP_01468508.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. BL107]
 gi|116066644|gb|EAU72401.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. BL107]
          Length = 689

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 153/400 (38%), Gaps = 59/400 (14%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS---------PG 477
            +       Q   I  +++G  +    GRI L+NP  R L++ E   L            
Sbjct: 290 EELTAAQVKQQSLIATMADGAILLDATGRIVLANPTSRRLFRWEGRSLEGQELVEELPEL 349

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
             I   +A  +  ++ SDG DL  ++       R  +Q   +   +S+   ++       
Sbjct: 350 LSIEVHSALDALLFSSSDGEDLRCSVGEPARTLRIVMQAVRDASGESLKGIAVT------ 403

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                              +      + +  ++ F+ +VS+ELR+PL NI  + + L   
Sbjct: 404 ------------------IQDLTREVELNAAQSRFISNVSHELRTPLFNIKSYVETLHDL 445

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  ++ +++   +  +  L  LVND+LDL+ +++G   + + T+ L   + +  ++
Sbjct: 446 GDQLTEDEKKEFLGVANDETDRLTRLVNDVLDLSRLESGR-TVQFETMNLRPAMEQTLRT 504

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                 +  + +++     L   + +   LLQ+F  ++ NA+ FS  G  + ++A     
Sbjct: 505 YRLNAEDKTVELELDVAPDLPDVLGNWDLLLQVFDNLVGNALKFSRPGGILSMRAYVWPD 564

Query: 718 ------------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR- 752
                                        + + G  I     + +F+RF    +      
Sbjct: 565 TCRVEDPISTMSEGPTCTLTSPLPKLRVEIADTGYGISAQDQQRIFDRFYRVENAVHTEV 624

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           G GLGLSIV   ++ HG  V + S  +  TT    +P +E
Sbjct: 625 GTGLGLSIVRGILDKHGAQVFMVSELDVGTTFWFELPLEE 664



 Score = 37.6 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 20/185 (10%), Positives = 52/185 (28%), Gaps = 17/185 (9%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            S    +F   V     G     +++   N+      A D +    +         ++  
Sbjct: 248 RSVASGDFQARVDLPMGGE--LGELLTGFNAMASQLEAYDEANIEELTAAQVKQQSLIAT 305

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN------PSNDELLEFLRSANKLPEQ 368
           +     + D    +   N +   L+  +   L         P    +         L   
Sbjct: 306 MADGAILLDATGRIVLANPTSRRLFRWEGRSLEGQELVEELPELLSIEVHSALDALLFSS 365

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETK 428
            + +  + ++    ++           +G++L          G     ++LT +V+L   
Sbjct: 366 SDGEDLRCSVGEPARTLRIVMQAVRDASGESLK---------GIAVTIQDLTREVELNAA 416

Query: 429 YNTLV 433
            +  +
Sbjct: 417 QSRFI 421


>gi|165938304|ref|ZP_02226862.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009958|ref|ZP_02230856.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211542|ref|ZP_02237577.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400347|ref|ZP_02305860.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419557|ref|ZP_02311310.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|294503231|ref|YP_003567293.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
 gi|165913682|gb|EDR32301.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165991354|gb|EDR43655.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207313|gb|EDR51793.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962298|gb|EDR58319.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050296|gb|EDR61704.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|262361270|gb|ACY57991.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D106004]
 gi|262365193|gb|ACY61750.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D182038]
 gi|294353690|gb|ADE64031.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
          Length = 926

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 330 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 385

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 386 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 426

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 427 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 483

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 484 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 543

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 544 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 602

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 603 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 662

Query: 784 INCRIPS 790
              RIP 
Sbjct: 663 FAIRIPL 669


>gi|302384308|ref|YP_003820131.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194936|gb|ADL02508.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
          Length = 694

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 152/398 (38%), Gaps = 33/398 (8%)

Query: 421 VQVDLETKYNTLVKVQGET-IDHLS--EGVAVFGPDGRIKLSN-----PAFRSLWKTEEN 472
            ++     Y    + +    +D +S  E V + GPD      +      A        + 
Sbjct: 142 DEIRGSATYRQSERGRASFGLDAVSTREAVVLVGPDPYFVTVSSVVPEDAAHDHPGNADP 201

Query: 473 RLSPGTHIRNIAATCS--------RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            +  G  +R    T +        R              + + D +   + G       +
Sbjct: 202 IVISGRSVRGFVETLATDLMLSNPRLLPADARHGQARLPLHAADGKVVGVIGWTPDRPGA 261

Query: 525 VLEYSIIPLPNA-----------QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
            L    +P+  A             M  +  + D    E  L         A+  K+ F+
Sbjct: 262 ALLVDAVPMLAALVTLLLASVAFGGMRVYRLLRDLAHNEAVLDRTLAEAETANAAKSQFL 321

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+ELR+PL  II  T+LL+  +    +S+  +    I +S   L  +VNDILD+A +
Sbjct: 322 ANMSHELRTPLNGIIAMTELLRDHQ---TDSRGREMAATIISSGHTLEYVVNDILDVAKI 378

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFS 692
           +AG+++   +   L+DLL    Q          I +++ I D   G +  DR R+ Q+ S
Sbjct: 379 EAGLLQFEAAPFDLDDLLKAATQLHGAAAAAKGITLRLTIHDDASGVYRGDRTRVSQVIS 438

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQ 750
            ++SNA+ F+  G   +      + +   SV + G          +F RF         +
Sbjct: 439 NLISNAVKFTETGGVQVTARRHGDRELCLSVSDTGVGFDRATAARLFQRFEQADVSVSRR 498

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGL+I  S   + GG V++ S     +T    +
Sbjct: 499 YGGTGLGLAICASLTEIMGGRVTVRSVPGKGSTFFAHL 536


>gi|116199499|ref|XP_001225561.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
 gi|88179184|gb|EAQ86652.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
          Length = 1901

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 21/255 (8%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L      L++A + K  F+ ++S+E+R+PL  I G    L+ +   +LN +Q  Y   I 
Sbjct: 1218 LKLLETKLKEAMDSKGRFLSNMSHEIRTPLIGISGMVTFLQDT---TLNEEQRDYTNTIQ 1274

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             S+  LL ++NDILDL+ VDAG+MKLNY       L+ +V + ++T      + +  + +
Sbjct: 1275 TSANSLLMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVE 1334

Query: 675  GKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----------RDNGDFIFSV 723
              + ++V  D+ R+ Q+   ++ NA+ F+S+G  V  K             D     FS+
Sbjct: 1335 EDVPAWVKGDKVRIRQVLLNVIGNAIKFTSRGE-VFSKCRVFNPEGAPPQTDEIMLEFSI 1393

Query: 724  KNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             + G    ++    +F  F     +   Q  G GLGL I    + LHGG +  S+     
Sbjct: 1394 IDTGRGFSQEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGRMEGSAIPNKG 1453

Query: 782  TTINCR----IPSKE 792
            +T        +P+++
Sbjct: 1454 STFTFTARFGLPTED 1468


>gi|65318667|ref|ZP_00391626.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 463

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +      LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 178 RKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 237

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 238 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 295

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  IRI    + ++   + D  R+ Q+
Sbjct: 296 AQLEGEHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRMQQV 354

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++++   +++   + +     S+K+ G  I  +  +++  RF        
Sbjct: 355 LHNVLDNAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARS 414

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 415 RQHGGTGLGLAIVRQIVHIHDGQWQIESEKGNGTTVSIKL 454


>gi|320162274|ref|YP_004175499.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319996128|dbj|BAJ64899.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 470

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           + AA++ S   +R +LQ  LE++++     +     + +      +  +  R  +A  + 
Sbjct: 167 VLAALLASVAVQR-TLQ-PLEMVTEVATTITRADDLSRRIPTPPNSDDEVGRLIQAFNQT 224

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
              L      +  F+  VS+ELR+PLT I G   L++  K G   S     ++ I +   
Sbjct: 225 LSRLESLFTTQRRFIADVSHELRTPLTVIKGEVSLMRKMKCGDEES-----LQSIESEVD 279

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            L  LV ++L LA  ++G + L+   + ++ +L EV Q + T   E  + +++++  +  
Sbjct: 280 RLSRLVGNLLLLAQAESGRLPLDLKPVEMDTILLEVFQQMRTLAGEK-VHLEIVT-LEQV 337

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           S + DR RL Q+   I+ NA+ ++  G  V L   + +G    +V + G  IPE+    +
Sbjct: 338 SLIGDRDRLKQVLLNIVGNAVQYTPAGGVVTLGLTQTDGYARITVSDTGPGIPEEDLPYI 397

Query: 739 FNRFVSNAHRGQR-----RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F RF        R      G GLGLSI    + +HGG + ++S     TT    +P K
Sbjct: 398 FERFYRGEKSRTRSQGQASGFGLGLSIAYWIVQVHGGKIDVTSVVGKGTTFIIHLPLK 455


>gi|325679756|ref|ZP_08159330.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324108571|gb|EGC02813.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 508

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 122/246 (49%), Gaps = 3/246 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  +  + L +    +RK ++++   + +VS++LR+PLT +  + ++++    G    
Sbjct: 245 YKEVEQLAKVLNDAKNEIRKVNDLRRDLIGNVSHDLRTPLTMVKAYAEMIRD-LSGDNPV 303

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K++++++ I   +  L NLVN++L+L+ +++G M+LN     + D LN+        + +
Sbjct: 304 KRAEHIQVIIDEADRLSNLVNNLLELSKLESGNMELNLKKFSIVDKLNDCMTRYQLVIEQ 363

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           N   +K   D       AD  +L Q+    ++NA++++ +   + +K           V+
Sbjct: 364 NGYDMKFEPDDD-REVTADPDKLDQVIYNFINNAINYTGEHKVIRIKQINTEKAVRIEVE 422

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +NG  I +D+   VF+R+  +A  +    G GLGL+I +  +  H     + S +   +T
Sbjct: 423 DNGKGIAKDLLPKVFDRYYRDAKVKRDVVGTGLGLAICKEILKCHDFPFGVRSEEGKGST 482

Query: 784 INCRIP 789
               IP
Sbjct: 483 FWFEIP 488


>gi|30019452|ref|NP_831083.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|218234975|ref|YP_002366083.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|228957670|ref|ZP_04119417.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229043139|ref|ZP_04190864.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676]
 gi|229108855|ref|ZP_04238460.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15]
 gi|229126715|ref|ZP_04255727.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4]
 gi|229144004|ref|ZP_04272420.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24]
 gi|229149600|ref|ZP_04277832.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550]
 gi|296501981|ref|YP_003663681.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|29894996|gb|AAP08284.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|218162932|gb|ACK62924.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|228633946|gb|EEK90543.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550]
 gi|228639401|gb|EEK95815.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24]
 gi|228656655|gb|EEL12481.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4]
 gi|228674624|gb|EEL29863.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15]
 gi|228726198|gb|EEL77430.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676]
 gi|228802012|gb|EEM48882.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296323033|gb|ADH05961.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 466

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 133/291 (45%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV+  +++HGG   I S  +  TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|332093442|gb|EGI98500.1| sensor protein evgS [Shigella boydii 3594-74]
          Length = 1128

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 449 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 508

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 509 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 567

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 568 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 627

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 628 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 685

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 686 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 745

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 746 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 805

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 806 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 865

Query: 789 PSK 791
           P +
Sbjct: 866 PVE 868


>gi|302039214|ref|YP_003799536.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300607278|emb|CBK43611.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 892

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 108/740 (14%), Positives = 240/740 (32%), Gaps = 65/740 (8%)

Query: 75  LLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFEN-WLKFHHYIKLSKATEK 133
           L  +       W  ++     + +L         D  +  F    +       L      
Sbjct: 189 LFNQAAEKMFQWGAEEVLGRPLDRLLPERFRSAHDEHIREFGRSGITTRQMGALGM-VMG 247

Query: 134 LRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHIS 193
           +R  G+ F + A       I +EG                I  ++ E     ++L+   +
Sbjct: 248 VRANGEEFPIEAAISQ---IGVEG----------TRYYTVILRDITERIRLEQELAEREA 294

Query: 194 VFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET---EGIVFQKAIGESRKLFKEEIKK 250
           + + + ++    V   +  G I   N +     E      ++ + A       F+   ++
Sbjct: 295 LLRAIIETEPECVKLLNLDGTIRTINAAGLAMIEATSGADVIGRDACRLVTDEFRSVYRE 354

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------AGIAIDVSK----EIT 300
            +  +   E    E       G ++      V     +       G+  DV++    E  
Sbjct: 355 LVGKAGRGEAGRLEFEMVGLLGTHRWLDTHVVPLRSADGTVTAVLGVTRDVTEWKKTEAL 414

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           +         +L  L  AI + ++   + F N   V L+           S  +L     
Sbjct: 415 LRQSEDRYRRLLAVLPDAILV-NREGRIIFTNEQGVRLFGARSGEEILGKSLYDLA---- 469

Query: 361 SANKLPEQLNWKTWK-ENIFSVYKSSETHKDTWH---LPNGQTLHVIVTSN-----PRGG 411
                    ++     E I  + +   T  +        +G ++ V V +         G
Sbjct: 470 -------HPDYHELIGERIRHLLRPGNTVPEVEEKIVRLDGVSVDVAVRAARFQDEEGFG 522

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWK-T 469
            + +  +++++   E K     +     +  + + +     D   +   +P+   ++   
Sbjct: 523 ILVVLRDISMRKAAEQKLRESEERLQSLLGAMEDVIWSSSLDLSTMFYVSPSVMEIYGRP 582

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            +  L+  +          R   E     L        +     L G L  L D      
Sbjct: 583 TDAFLARPSLWLEAVHPDDRVIAEQARQALSTMGEFDVEYRIVRLDGDLRWLHDR----- 637

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
              + +A+     ++   S   ER   +      +      +    +++E+ +P+  I+G
Sbjct: 638 GRVIKDAEGRPLRIDGIASDITERKRLQAQLRRTERVAELGTVASGMAHEIGTPMNVILG 697

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             + L      +      + ++ I +    +  ++N +L  A        + +  + L  
Sbjct: 698 RAEYLMER---TKEEPVRKGLQTIVSQVERITRVMNQLLAFAR----RRPVEHRALDLRQ 750

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            + +  +    ++  +NI ++           AD  ++ Q+   ++ NA+     G  + 
Sbjct: 751 TIEDNLEIFQERLSHSNISVETSFADACPLVHADADQMSQVLINLVMNAIHAMPGGGLLK 810

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHG 769
           L    D G    +V + G  +P D+   VF+ F +    G  +G GLGL++V+  I  H 
Sbjct: 811 LALTPDRGMVRLTVADTGHGMPRDVIAKVFDPFFTTKEFG--KGTGLGLTVVKGIIEEHS 868

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G + + S  E  TT    +P
Sbjct: 869 GTIEVESEPERGTTFTICLP 888



 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 92/287 (32%), Gaps = 25/287 (8%)

Query: 292 AID--VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           A+D     E  ++        I+H+   AI   D+   +   N++  ++++     +   
Sbjct: 149 AVDGQRRAEAELHQDKLRFEGIVHSAMDAIITVDEAHKIVLFNQAAEKMFQWGAEEVLGR 208

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-------PNGQTLHV 402
           P +  L E  RSA+            E+I    +S  T +    L        NG+   +
Sbjct: 209 PLDRLLPERFRSAH-----------DEHIREFGRSGITTRQMGALGMVMGVRANGEEFPI 257

Query: 403 IVTSNPRG-----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
               +  G         +  ++T ++ LE +      +    I+   E V +   DG I+
Sbjct: 258 EAAISQIGVEGTRYYTVILRDITERIRLEQELAEREALLRAIIETEPECVKLLNLDGTIR 317

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N A  ++ +        G     +     R                  + E   L GT
Sbjct: 318 TINAAGLAMIEATSGADVIGRDACRLVTDEFRSVYRELVGKAGRGEAGRLEFEMVGLLGT 377

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
              L   V+            +    +VT+  + E  L +  +  R+
Sbjct: 378 HRWLDTHVVPLRSADGTVTAVLGVTRDVTEWKKTEALLRQSEDRYRR 424



 Score = 44.5 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 100/310 (32%), Gaps = 44/310 (14%)

Query: 37  TIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEII 96
           T+  ++ + R      K                 +Y  LL       +V   ++      
Sbjct: 394 TVTAVLGVTRDVTEWKKTEALLRQSE-------DRYRRLLAVLPDAILV--NREGRIIFT 444

Query: 97  GQLHQRIDIPQTDTDLL--SFENWLKFHHYIKLSKATEKLRKEGQS---FDLVAETQNDC 151
            +   R+   ++  ++L  S  +     ++  + +    L + G +    +      +  
Sbjct: 445 NEQGVRLFGARSGEEILGKSLYDLAHPDYHELIGERIRHLLRPGNTVPEVEEKIVRLDGV 504

Query: 152 AIKIEGRVSGSCAFLRILSLDG-----IYSELAETTLKCKKLSNHISVFKVLFDSLDFLV 206
           ++ +  R +      R    +G     +  +++      +KL       + L  +++ ++
Sbjct: 505 SVDVAVRAA------RFQDEEGFGILVVLRDISMRKAAEQKLRESEERLQSLLGAMEDVI 558

Query: 207 WHRDQAGDILW-----ANISYKKNTE---TEGIVFQKAIGESRKLFKEEIKKRMISSSAL 258
           W        ++         Y + T+       ++ +A+    ++  E+ ++ + +    
Sbjct: 559 WSSSLDLSTMFYVSPSVMEIYGRPTDAFLARPSLWLEAVHPDDRVIAEQARQALSTMGEF 618

Query: 259 EKNFCETVSTLEHGNNKSYKIVRVLNSFGEA------GIAIDVSKEITVNDQLTHTYEI- 311
           +  +         G+ +       +    E       GIA D+++   +  QL  T  + 
Sbjct: 619 DVEYRIVR---LDGDLRWLHDRGRVIKDAEGRPLRIDGIASDITERKRLQAQLRRTERVA 675

Query: 312 -LHNLTVAIA 320
            L  +   +A
Sbjct: 676 ELGTVASGMA 685


>gi|167469186|ref|ZP_02333890.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis FV-1]
          Length = 850

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 330 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 385

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 386 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 426

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 427 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 483

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 484 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 543

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 544 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 602

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 603 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 662

Query: 784 INCRIPS 790
              RIP 
Sbjct: 663 FAIRIPL 669


>gi|32472478|ref|NP_865472.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1]
 gi|32443714|emb|CAD73156.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1]
          Length = 1998

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             +  L     A  +A++ K+ F+  +S+E+R+P+T I+GFT+LL    +   ++++  ++
Sbjct: 1414 TKEKLQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLLRGVVTD-DAERESHL 1472

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I ++   LL+L+NDILD++ ++A  ++        + ++ +V  S+ +K  E +I ++
Sbjct: 1473 QTIHSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEKDISLE 1532

Query: 671  VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
            +  D +      +D  RL QI + + SNA+ F+++G   I    + +         +V++
Sbjct: 1533 IQVDSEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGGVTISISAIGSGETASKMKIAVRD 1592

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            +G  + ++    +F  F        R   G GLGLSI +       G + + S     T
Sbjct: 1593 SGIGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESERGVGT 1651


>gi|323967797|gb|EGB63209.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|327252012|gb|EGE63684.1| sensor protein evgS [Escherichia coli STEC_7v]
          Length = 1197

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 168/422 (39%), Gaps = 13/422 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   +  +  + +      + +     + N  +
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNVHE 637

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL-PNAQTMLTFVNVTDSVRAERA 554
                    T +    +   GT +   +       +P   NA  +  + ++T++     A
Sbjct: 638 VTAETKENRTIYSQVFEINNGTEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIHA 697

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +    
Sbjct: 698 LEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLAY 755

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S 
Sbjct: 756 ATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALNCSST 815

Query: 675 -GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGSS 729
             +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ + GS 
Sbjct: 816 LPERYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDTGSG 875

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + ++  + +F R+       Q+ G GLGL I +  I    G +S+ S     TT    IP
Sbjct: 876 LSQEEQQQLFKRYSQTTAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIP 935

Query: 790 SK 791
            +
Sbjct: 936 VE 937


>gi|119944685|ref|YP_942365.1| aerobic respiration control sensor protein ArcB [Psychromonas
           ingrahamii 37]
 gi|119863289|gb|ABM02766.1| PAS/PAC sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 753

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 152/384 (39%), Gaps = 21/384 (5%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           +  +   + K      +    ++   + V       R    N A   L    E +L   T
Sbjct: 114 IIERKASQQKLVEAASLLKSFLNTSPDLVFHRDLKSRFVSCNKAMEMLTGKTEKQLISLT 173

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                    +      D       +     ++             +  E   +PL N++ 
Sbjct: 174 PFDIFPEDYAHQAVTRDQN-----VKKQKKEQIHEHWLHFPNGKKAYFEVRTLPLFNSEA 228

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +   +        ER   +  E++ K    K  F+  +S+ELR+PL  I+G + +L   +
Sbjct: 229 VCIGIIGFGRDITER--KKHQESIDKNIREKTDFISSISHELRTPLNGIVGLSRMLLDEQ 286

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L S+Q ++++ I  S+  L N+ +DI++L  +D   +KL  + I + D ++++K   
Sbjct: 287 ---LTSEQMKHLKTIHISAISLGNIFSDIINLDKLDRNRLKLATNKINMLDFISDLKSLS 343

Query: 659 ATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---- 713
             +  +  + +     G     +  D  RL Q+   ++SNA+ F+ KG T+ ++      
Sbjct: 344 FIQTEQKGLVLNFEQRGHFPDIIETDDTRLRQVLWNLISNAVKFTQKG-TITIRCVCHQL 402

Query: 714 -RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
            ++  +  F V+++G  IPED    +F  +          G G+GL++        GG +
Sbjct: 403 NQNQVELCFEVEDSGIGIPEDQLDKIFAMYYQVEGNTFATGTGIGLAVTSKIAQAMGGVI 462

Query: 773 SISSSDEGVTTINCRI----PSKE 792
           S+ S     +     +    P+KE
Sbjct: 463 SVKSKLGEGSMFKLTLTVNCPAKE 486



 Score = 42.6 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 13/148 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVF 233
           +  E+ E     +KL    S+ K   ++   LV+HRD     +  N + +  T       
Sbjct: 110 LEKEIIERKASQQKLVEAASLLKSFLNTSPDLVFHRDLKSRFVSCNKAMEMLTG--KTEK 167

Query: 234 QKAIGESRKLFKEEIKKRMISSSA---LEKNFCETVSTL--EHGNNKSYKIVRVLN---- 284
           Q        +F E+   + ++       +K        L   +G    +++  +      
Sbjct: 168 QLISLTPFDIFPEDYAHQAVTRDQNVKKQKKEQIHEHWLHFPNGKKAYFEVRTLPLFNSE 227

Query: 285 --SFGEAGIAIDVSKEITVNDQLTHTYE 310
               G  G   D+++     + +     
Sbjct: 228 AVCIGIIGFGRDITERKKHQESIDKNIR 255



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 57/192 (29%), Gaps = 16/192 (8%)

Query: 260 KNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAI 319
           +     +        +  +  R+     E  I    + +  + +  +     L+     +
Sbjct: 83  EEARMHLDNTVASLREVRQKERIKTHELEKEIIERKASQQKLVEAASLLKSFLNTSPDLV 142

Query: 320 AIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
              D        N++   L       L +    D   E         +Q   K  KE I 
Sbjct: 143 FHRDLKSRFVSCNKAMEMLTGKTEKQLISLTPFDIFPEDYAHQAVTRDQNVKKQKKEQI- 201

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPR-------GGTIWMFENLTVQVDLETKYNTL 432
                   H+   H PNG+  +  V + P         G I    ++T +   +   +  
Sbjct: 202 --------HEHWLHFPNGKKAYFEVRTLPLFNSEAVCIGIIGFGRDITERKKHQESIDKN 253

Query: 433 VKVQGETIDHLS 444
           ++ + + I  +S
Sbjct: 254 IREKTDFISSIS 265


>gi|89902167|ref|YP_524638.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89346904|gb|ABD71107.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 1202

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 111/240 (46%), Gaps = 5/240 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A R   +   A  +A++ K+ ++  +S+ELR+PL +I+G+  L+       ++ +Q+  V
Sbjct: 718 ARRVAEQARHAADQANQAKSRYISAISHELRTPLNSILGYAQLMGEDPSIPVHRQQA--V 775

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I      LL+L+   LD+A +++G + LN   +    L+ ++      +     +  +
Sbjct: 776 SVIKRGGEHLLSLIEGTLDIAHIESGKLTLNPRPMHFASLMQDIASLFELEAQAKGLSFR 835

Query: 671 VISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            +    L + V AD +R+ QI   +L NA+ F+ KG  V           +  +++ G  
Sbjct: 836 YVEGAALPAVVRADEKRVRQILINLLGNAIKFTQKG-QVTFDIRYAREMAVIDIEDTGPG 894

Query: 730 IPEDMCKSVFNRFVSNAHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +       +F  F      G    G GLGL+I +   +L GG ++++S+    +    ++
Sbjct: 895 LSPQELNRIFEPFTRAHTPGATASGSGLGLTIAKMLTDLMGGELTVTSTPGMGSVFKVKL 954


>gi|308273634|emb|CBX30236.1| hypothetical protein N47_D30450 [uncultured Desulfobacterium sp.]
          Length = 598

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 153/375 (40%), Gaps = 28/375 (7%)

Query: 424 DLETKYNTLVKVQGET---IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           +L  +  T++  Q E    +  ++EG+     + +I   N +   ++    + L      
Sbjct: 243 NLNDRMQTIISQQKEIEAILSSMTEGLVAVNMEEKIINVNSSVARMFHRPASEL------ 296

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I  +        +            D+       +     +++L     PL NA    
Sbjct: 297 --INRSVQEVVRNPELHQFVRKAF--LDESPHETDLSFHFDGETLLNIRSTPLKNAGGDR 352

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                         +      LR  + ++  F  +VS+E+++PLT I GFT+ LK   L 
Sbjct: 353 IGFLF---------ILNDVTRLRHLENMRRDFAANVSHEIKTPLTAIKGFTETLKAGALN 403

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI--MKLNYSTIVLNDLLNEVKQSI 658
               +  ++V  I   +  L+++++D++ L+ ++      ++     ++  +L    Q  
Sbjct: 404 K-PEEAFRFVGIIENHTNRLISIIDDLMKLSFIEQNSAGQEIALMDCMIRPILLSAIQIC 462

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             K  E  I+I  I D  L + + +   + Q F  ++ NA+ +S   ++V ++A +    
Sbjct: 463 RLKADEKKIKIVCICDEGLSAKI-NAALIEQAFVNLIDNAIKYSEPETSVEIEALKSETG 521

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
                +++G  I  +    +F RF        R   G GLGL+IV+  +N +GG +S+ S
Sbjct: 522 ITIVFRDHGIGISSEHIPRLFERFYRVDASRSRKLGGTGLGLAIVKHIVNANGGDISVES 581

Query: 777 SDEGVTTINCRIPSK 791
                ++   +IP+K
Sbjct: 582 KPGKGSSFCIQIPNK 596


>gi|228948417|ref|ZP_04110700.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811404|gb|EEM57742.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 484

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 124/271 (45%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +    DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVWSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|22126848|ref|NP_670271.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis KIM 10]
 gi|108806928|ref|YP_650844.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Antiqua]
 gi|108812920|ref|YP_648687.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|149366792|ref|ZP_01888826.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|218928376|ref|YP_002346251.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis CO92]
 gi|270487159|ref|ZP_06204233.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|21959879|gb|AAM86522.1|AE013898_5 sensor for ctr capsule biosynthesis [Yersinia pestis KIM 10]
 gi|108776568|gb|ABG19087.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Nepal516]
 gi|108778841|gb|ABG12899.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Antiqua]
 gi|115346987|emb|CAL19878.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CO92]
 gi|149291166|gb|EDM41241.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|270335663|gb|EFA46440.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
          Length = 957

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 361 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 416

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 417 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 457

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 458 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 514

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 515 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 574

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 575 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 633

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 634 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 693

Query: 784 INCRIPS 790
              RIP 
Sbjct: 694 FAIRIPL 700


>gi|266619522|ref|ZP_06112457.1| sensory box histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288868933|gb|EFD01232.1| sensory box histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 468

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   ++ L K +E + +F+ +VS++ RSPLT+I G+ + +    +        +Y+  + 
Sbjct: 230 LNYMSDELNKMEEYQKTFIANVSHDFRSPLTSIKGYLEAILDGTIPP--EMYEKYLTRVI 287

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L   +L L T+D+    LN +   +N ++ +   S      E NI   +   
Sbjct: 288 TETERLNKLTQGMLTLNTLDSKGY-LNRTNFDINRVIKDTAASFEGTCEEKNINFDLTFS 346

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +    AD  ++ Q+   ++ NA+ FS   ST+ ++A+        SVK+ G  IP+D 
Sbjct: 347 NNIQMVYADLGKIQQVMYNLIDNAIKFSHHDSTIYIQASGKYEKIFISVKDTGIGIPKDS 406

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            K ++ RF  +       ++G GLGL+IV+  I  HG ++ + S++   T     +P 
Sbjct: 407 IKKIWERFYKSDLSRGKDKKGTGLGLAIVKEIIQSHGENIDVVSTEGVGTEFIFSLPK 464


>gi|122879009|ref|YP_198975.6| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1149

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 186/471 (39%), Gaps = 32/471 (6%)

Query: 336  VELWEIDLAFLATNPSNDELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             +L  +    +    ++   ++   L      P  +  + W +    +  +S        
Sbjct: 546  ADLQALAERVVGERHAHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAA---- 601

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                 +  +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD
Sbjct: 602  -----SARLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPD 656

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R+   N  ++ L+   +  L  G  + ++    +      +G D+   I       R  
Sbjct: 657  MRLTAWNRRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAG 715

Query: 514  LQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
                 E       V+E     LP    + ++ ++TD  RAERAL + NE L +       
Sbjct: 716  SPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSR 775

Query: 566  -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                  + K  F+  +S+++  PL     F   L+ S     N +Q    E + AS    
Sbjct: 776  EAELAQQSKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAA 833

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              L++ +LD++ +DAG ++        + L++E+    A       +R++V S  +    
Sbjct: 834  EELLDGLLDVSRLDAGGLRPTVEGFDASALMHELAAQYAPVAASRGLRLQVHS--RPIWV 891

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +DR+ L ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F 
Sbjct: 892  RSDRRLLRRVMQNFLANALRYTRQG-RIVLGMRGRGQQVELQVWDTGPGIPEHHMRQIFE 950

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F           +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 951  EFRRYQQPFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1001



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 561 AHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 620

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 621 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 680

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 681 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 739

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 740 GGYVTSYNDITDYKRAERALLDANENLEQ 768


>gi|228935979|ref|ZP_04098789.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823747|gb|EEM69569.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 484

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 126/271 (46%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + + +I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKESIEVNLQLHASPLYVKADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  +  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIVEEHGGNIWAESELGEGTSIFFSL 476


>gi|210613372|ref|ZP_03289692.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787]
 gi|210151214|gb|EEA82222.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787]
          Length = 470

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 4/236 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   +  L+  D+ +  F+ +VS++ RSPLT+I G+ + +    +      Q +Y + I 
Sbjct: 232 LNYMSTQLKDMDDYQKKFIANVSHDFRSPLTSIKGYLEAMADGTIPV--EMQDKYFKIIL 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L +L  D+L L   D   M L+ ++  +++++     +         I IK++  
Sbjct: 290 FETERLTDLTQDLLTLNQFDTKNMLLDKTSFDIHEVIKNTAATFEGTCTGKRISIKLLFA 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K+ +  AD++++ Q+   +L NA+ FS   S +I++    N     SVK++G  IP+  
Sbjct: 350 TKVLNVSADKRKIQQVLYNLLDNAIKFSPNDSEIIIETTEHNEKVFVSVKDHGIGIPKKS 409

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              ++ RF          ++G GLGLSIV+  I  H  ++++ S++   T     +
Sbjct: 410 LNKIWERFYKTDLSRGKDKKGTGLGLSIVKEIIQAHKQNINVVSTEGVGTEFTFSL 465


>gi|116625338|ref|YP_827494.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116228500|gb|ABJ87209.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 489

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 3/241 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  ++  L K + I+  FV +VS+ELR+PL +I G+T+ L    L   +     ++  I
Sbjct: 235 QLQHEHSELEKLERIRKDFVINVSHELRTPLASIQGYTETLIDGALTDPDHNMR-FLGII 293

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  L  L  D+L L+ V+    K  +     N L+++  + ++    +N I +    
Sbjct: 294 RHNAERLARLTEDLLTLSRVEQKRQKFEFDLHSANALIHDAFELVSPIARKNYIELVEER 353

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             +      D + + QI S +L NA+ ++     + + A        F V++ G+ IPE+
Sbjct: 354 APEDAVVCCDSEAVSQILSNLLDNAIKYTPADGKITMGATPVGSMVEFFVRDTGAGIPEE 413

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F RF        R   G GLGLSIV+  +  H G   + S     +T    +P  
Sbjct: 414 DLPRLFERFYRVDKARSRELGGTGLGLSIVKHMVAAHSGATRVESVVHQGSTFYFTLPVD 473

Query: 792 E 792
           E
Sbjct: 474 E 474


>gi|228951780|ref|ZP_04113879.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807902|gb|EEM54422.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 468

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 134/291 (46%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +         ++Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--AQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV+  +++HGG   I S  +  TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|162453719|ref|YP_001616086.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161164301|emb|CAN95606.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 2019

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/532 (16%), Positives = 188/532 (35%), Gaps = 47/532 (8%)

Query: 292  AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
            A     E  +         I+ N   AI + D++      NR    +  +    L     
Sbjct: 1485 AERRRAEQALKANQVTLQAIVDNSAAAIFLKDRDGRYLLANRHAGNVAGVPSHELLGKTD 1544

Query: 352  NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPR 409
             +           L + ++ +  ++N   V  + E    ++      G+    +    P 
Sbjct: 1545 AE-----------LYQGVDVEVIRDNDRRVLDAGEPLEFEEEVLTKEGEPRIYLSLKFPL 1593

Query: 410  GGTI------WMFENLTVQVDLETKYNTLVKVQG--------ETIDHLSEGV-------A 448
            G ++       +  ++T +   E     L +            T+D +++          
Sbjct: 1594 GESVMPGVLCGICTDITERKRAELAERFLAEASRKLMALGYGATLDSVAQLALPALADRC 1653

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            V   D           ++       L+ G  +  +    +   +  +  D+ AA +    
Sbjct: 1654 VIDVDLTQDAPGRTATAVTAGVPAELA-GAVMDALRPLAAASPDRPEISDVRAAPLLEPL 1712

Query: 509  DERKSLQGTLELLSDSVLEYSII---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
                 L+  L          +++   P         ++    + RA  AL          
Sbjct: 1713 GVHSFLRVPLLARDRRFGVMTLLAAAPRHRYGPADLWLAQELASRAALALDNSRLFAEAQ 1772

Query: 566  D--EIKNSFVQHVSYELRSPLTNIIGFTDLLKT-----SKLGSLNSKQSQYVEYISASST 618
            +  E ++ F+   S+EL++PLT++     LL        +      +    ++ ++    
Sbjct: 1773 EAIERRDEFLLVASHELKTPLTSLTMQAHLLARLLPRLQRAEVAPERIDAAIQLLNRQIA 1832

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             L +LVN++LD+  ++AG + L+ + + L  L  EV + +  ++ +   R ++  D  + 
Sbjct: 1833 RLAHLVNELLDVTRLNAGQLTLSRAPVDLAALAREVVERMHQQLTDARCRTQLELDEPVM 1892

Query: 679  SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
                D  R+ Q+   +LSNA+ +   G  + +   R+    +  V+++G  I E     +
Sbjct: 1893 GHW-DPSRMEQVLINLLSNALKYG-AGGLIHVIVRREGARAVLVVRDHGMGIAEADQARI 1950

Query: 739  FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            F RF          G+GLGL IV   +  HGG + + S      T    +P 
Sbjct: 1951 FERFERAVSVRNFGGLGLGLYIVRWIVTSHGGTIRVESRPGAGATFIVELPL 2002



 Score = 42.6 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 59/192 (30%), Gaps = 20/192 (10%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
             I  E AE     + L  +    + + D+    ++ +D+ G  L AN   +      G+ 
Sbjct: 1479 DIEQENAERRRAEQALKANQVTLQAIVDNSAAAIFLKDRDGRYLLAN---RHAGNVAGVP 1535

Query: 233  FQKAIGESRKLFKEEIKKRMISS------SALEKNFCETVSTLEHGNNKS-----YKIVR 281
              + +G++     + +   +I         A E    E     + G  +      + +  
Sbjct: 1536 SHELLGKTDAELYQGVDVEVIRDNDRRVLDAGEPLEFEEEVLTKEGEPRIYLSLKFPLGE 1595

Query: 282  VLNSFGEAGIAIDVSKE---ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
             +      GI  D+++          L      L  L    A  D    L     +  + 
Sbjct: 1596 SVMPGVLCGICTDITERKRAELAERFLAEASRKLMALGYG-ATLDSVAQLAL--PALADR 1652

Query: 339  WEIDLAFLATNP 350
              ID+      P
Sbjct: 1653 CVIDVDLTQDAP 1664


>gi|88604109|ref|YP_504287.1| multi-sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
 gi|88189571|gb|ABD42568.1| multi-sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
          Length = 930

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 95/518 (18%), Positives = 184/518 (35%), Gaps = 47/518 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
            KE+ +         ++      I  F  +    F N ++   +      +     + E+
Sbjct: 425 QKELQIQKSEERYRSVVETQNEFICRFTPDGTHIFVNDAYCRFFGKSCDEILGTKFSPEI 484

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--LPNGQ---TLHVIVTSNPRG 410
                     PE    +  K ++  + +   T  +  H  LPNG+      +        
Sbjct: 485 ----------PEDERIQ-LKNHLAGLTRQHPTDLNEHHIILPNGERRYIQWIDQAIFSET 533

Query: 411 GTIWMFE----NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSL 466
           G I  ++    +LT   +LE   +    +  ET++ + +GV V      I + N      
Sbjct: 534 GEITEYQSVGRDLTEVKELEKSLHASDSLYRETVNAMDDGVFVTDSTHSILIWN---GWK 590

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
              +   L    H+          Y     +  +  + +S   +    +  +E      L
Sbjct: 591 LGKQAKLLKEHKHLEGKKLFSILTYLTEKDYLEYDGVFSS--GKIAVYETIIEKERPIYL 648

Query: 527 EYSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNS----------- 571
           E  IIP+     + T      ++T    +E+AL + N  L +    +             
Sbjct: 649 ETKIIPIITDDQVTTVVTLIRDITLRKESEKALHKLNLDLEEIIRKRTEDLQSSLDELDA 708

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F   VS++LR P+  I GF+ LL       L+ +    +  I  S T +  L+ D+L  +
Sbjct: 709 FAYSVSHDLRGPVRAIDGFSHLLLLKAGDILDEENKHLISRIRESVTTMDRLIQDLLRFS 768

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
                   L    I +  L+  V   + ++    NI + +     + S   D   + Q++
Sbjct: 769 R--TARQPLQVIDIEMGGLVRGVITELTSQPETRNISVHI---KDMRSSKGDPGLIRQVW 823

Query: 692 SKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             ++SN++ F+   +   + + +     + I+ +K+NG          VF  F   A   
Sbjct: 824 YNLISNSIKFTLPDTVPDITIGSYEKESEIIYYIKDNGIGFDMQYADKVFEVFSRLAPSP 883

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              G G+GL++V+  I  H G + + S     TT    
Sbjct: 884 NAEGTGVGLALVKRIILRHHGRIWVQSGKGRGTTFYFT 921



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 100/296 (33%), Gaps = 34/296 (11%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           RI + + I + L E   K  ++      ++ + ++ +  +      G  ++ N +Y +  
Sbjct: 409 RIQAEENIRNLLQEVQQKELQIQKSEERYRSVVETQNEFICRFTPDGTHIFVNDAYCRFF 468

Query: 227 ETEGIVFQKAIGESRKLFKEEIKKR---MISSSALEKNFCETVSTLEHGNNKSYKIVR-- 281
                              E I+ +      +     +  E    L +G  +  + +   
Sbjct: 469 GKSCDEILGTKFSPEIPEDERIQLKNHLAGLTRQHPTDLNEHHIILPNGERRYIQWIDQA 528

Query: 282 VLNSFGE----AGIAIDVSKEITVNDQLTH----TYEILHNLTVAIAIFDQNRYLQFHNR 333
           + +  GE      +  D+++   +   L        E ++ +   + + D    +   N 
Sbjct: 529 IFSETGEITEYQSVGRDLTEVKELEKSLHASDSLYRETVNAMDDGVFVTDSTHSILIWNG 588

Query: 334 SFVELWEID-LAFLATNPSNDE------LLEFLRSANKLPEQLNWKTWKENIFS--VYKS 384
                W++   A L     + E      +L +L   + L     + + K  ++   + K 
Sbjct: 589 -----WKLGKQAKLLKEHKHLEGKKLFSILTYLTEKDYLEYDGVFSSGKIAVYETIIEKE 643

Query: 385 SETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETI 440
              + +T  +P       I+T +     + +  ++T++ + E   + L     E I
Sbjct: 644 RPIYLETKIIP-------IITDDQVTTVVTLIRDITLRKESEKALHKLNLDLEEII 692


>gi|304407980|ref|ZP_07389630.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
 gi|304342999|gb|EFM08843.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
          Length = 880

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L E   +  +A   K  F+ ++S+E+R+P+  IIG   LL+ ++   L  +Q  Y   
Sbjct: 220 RLLVEAKLSAEEASRAKGEFLANMSHEIRTPMNGIIGLNHLLRQTE---LTDQQQDYSNK 276

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+  L+ ++NDILD + ++A  + L      L ++L+ V   +  K +E  +     
Sbjct: 277 MLLSANNLITIINDILDYSKIEANKIVLEQIDFDLFEVLHNVSNIVNVKAYEKGLHFHFS 336

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNG 727
              ++    V D  R  Q+   +L+NA+ F+ +G   V +      G       +V + G
Sbjct: 337 VHHEVPQMLVGDPHRFAQVLVNLLNNAVKFTERGEVSVAIDQLPSTGSSVLLRCAVSDTG 396

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             +  +    +F  F        R   G GLGL I +  + L GG +++ S     +  +
Sbjct: 397 IGLTREQQSKLFRHFTQADMSTTRKYGGTGLGLVISKELVQLMGGTLTVKSEQGNGSCFS 456

Query: 786 CR 787
             
Sbjct: 457 FT 458


>gi|294781584|ref|ZP_06746920.1| sensor histidine kinase/response regulator [Enterococcus faecalis
           PC1.1]
 gi|294451280|gb|EFG19746.1| sensor histidine kinase/response regulator [Enterococcus faecalis
           PC1.1]
          Length = 590

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 155/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQGML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L            +Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 449 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|83649318|ref|YP_437753.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83637361|gb|ABC33328.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 599

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 121/255 (47%), Gaps = 3/255 (1%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +  +  +  + +A+              + K+ F+ ++S+ELR+PL  ++GF  L++ 
Sbjct: 191 GFISLYWLMYLAKQAKVEADFHRRRAEANSDAKSRFLSNMSHELRTPLNAVMGFAQLMQM 250

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +L+ +Q Q ++ I  +S  LL+L+NDI+DL+ +++G + ++     +  L+NE   
Sbjct: 251 ESR-NLSREQMQNIDEIYKASEHLLSLINDIMDLSKIESGQLSISIEPCSVQSLVNESVS 309

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
            I +    NNI +             DR R++Q+ +  L+NA+ ++ KG  V ++   + 
Sbjct: 310 MIRSMAMMNNISVYEPEVRLDYLIKVDRTRMVQVLTNFLTNAIKYNRKGGWVKVELEHES 369

Query: 716 -NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +G    SV +NG  I +     VF  F   A      G G+GL++ +  + L  G +  
Sbjct: 370 RSGMLCLSVADNGIGIHKKDHHKVFKPFERLAQDMAIEGTGIGLALSQQLVLLMNGQIGF 429

Query: 775 SSSDEGVTTINCRIP 789
            S +   +    + P
Sbjct: 430 KSKEGQGSLFWVKFP 444


>gi|28211579|ref|NP_782523.1| alkaline phosphatase synthesis sensor protein phoR [Clostridium
           tetani E88]
 gi|28204020|gb|AAO36460.1| alkaline phosphatase synthesis sensor protein phoR [Clostridium
           tetani E88]
          Length = 471

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 127/283 (44%), Gaps = 15/283 (5%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           K L    E ++D  LE                   +  R    L    E + K D++KN 
Sbjct: 195 KKLTKVAEEMADGNLEIR----------NEKEFDDEIGRLSDTLNYMAEEILKKDKLKNE 244

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+E+R+PLT+I G+   L T  L   N      +  I   S  L  +V ++LD +
Sbjct: 245 FISSISHEIRTPLTSIKGWAITLNTEDLEDKN-LIRDGLNIIEEESERLSKMVEELLDFS 303

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            + +G + +    + LN++++ +++ ++ +    N++  V  +  L     D  R+ Q+F
Sbjct: 304 KLISGKVTIKKEKVDLNEVISYIEKYLSPRAKRENVQFIVEKNYDLPIMYIDVDRMKQVF 363

Query: 692 SKILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
             IL NA  FS +     V+L    +N + I  +++NG  I +     +  +F    +  
Sbjct: 364 INILDNAFKFSKEEGEKRVLLSIKIENEEVIILIEDNGYGISKSDLPKIKEKFYKGKNSK 423

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +   G+GLSI +  + +HGG +   S     T +  ++P K+
Sbjct: 424 SQN--GIGLSICDEIVAMHGGTLEFDSEINRGTKVYIKLPYKD 464


>gi|84621965|ref|YP_449337.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
            MAFF 311018]
 gi|84365905|dbj|BAE67063.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
            MAFF 311018]
          Length = 1150

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 186/471 (39%), Gaps = 32/471 (6%)

Query: 336  VELWEIDLAFLATNPSNDELLEF--LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             +L  +    +    ++   ++   L      P  +  + W +    +  +S        
Sbjct: 547  ADLQALAERVVGERHAHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAA---- 602

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                 +  +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD
Sbjct: 603  -----SARLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPD 657

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R+   N  ++ L+   +  L  G  + ++    +      +G D+   I       R  
Sbjct: 658  MRLTAWNRRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAG 716

Query: 514  LQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
                 E       V+E     LP    + ++ ++TD  RAERAL + NE L +       
Sbjct: 717  SPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSR 776

Query: 566  -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                  + K  F+  +S+++  PL     F   L+ S     N +Q    E + AS    
Sbjct: 777  EAELAQQSKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAA 834

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              L++ +LD++ +DAG ++        + L++E+    A       +R++V S  +    
Sbjct: 835  EELLDGLLDVSRLDAGGLRPTVEGFDASALMHELAAQYAPVAASRGLRLQVHS--RPIWV 892

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +DR+ L ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F 
Sbjct: 893  RSDRRLLRRVMQNFLANALRYTRQG-RIVLGMRGRGQQVELQVWDTGPGIPEHHMRQIFE 951

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F           +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 952  EFRRYQQPFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1002



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 562 AHRAFVDQAALLERELQPSVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 621

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 622 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 681

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 682 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 740

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 741 GGYVTSYNDITDYKRAERALLDANENLEQ 769


>gi|261251802|ref|ZP_05944376.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           orientalis CIP 102891]
 gi|260938675|gb|EEX94663.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           orientalis CIP 102891]
          Length = 776

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 131/270 (48%), Gaps = 8/270 (2%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +  +   +P++Q MLT V+   S   +R AL + +    +A + +  F+  +S+ELR+P+
Sbjct: 169 IRVTKRAIPDSQKMLTVVDDVTSEYQQRTALEKAHSLAEQAVQSRERFLATMSHELRTPI 228

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            ++IG  +LL        +  +   ++ + +S+  L  LVNDILD + +D+  + L    
Sbjct: 229 ASMIGLLELLSFENGNIADDYK---LKSLMSSARNLQLLVNDILDYSKLDSQGISLVEEL 285

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSS 703
           +   DLL ++ +       E  +  +   D   +   + D  RL QI + +LSNA+ F+ 
Sbjct: 286 VSYTDLLGDLVRLHEASARERGLVFETQWDNSDVEYILTDALRLSQIVNNVLSNAVKFTE 345

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
           +G  + +            V + G  I  D  +S+F+ F         +  G GLGL+I+
Sbjct: 346 QG-KIKVTVRVATQSIQIIVDDTGIGICPDKLESIFDPFRQADDSIERKYGGTGLGLAII 404

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +    L  G++SI+S++   T++   +P K
Sbjct: 405 KKLTTLMSGYISINSAEGKGTSVMISLPLK 434


>gi|221233697|ref|YP_002516133.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|220962869|gb|ACL94225.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 566

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 17/251 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL         A + K+ F+  +S+ELR+PL  ++G +  LK   L  L   + + VE 
Sbjct: 185 RALELAKSQAEAASQAKSEFLALMSHELRTPLNGMLGLSQALK---LEPLEPGEREQVEL 241

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S   LL L+ND+LD+A ++AG + +  +   L+ L   V +    +  E    I + 
Sbjct: 242 LEESGRTLLALLNDVLDMAKIEAGKLDIAPTQEDLSRLAERVVRINQAQAREKGTEITLE 301

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------FIFSVKN 725
            D     + + D  R+ Q    ++SNA+ F+  G  + ++   + GD          V +
Sbjct: 302 IDPATPRALLFDPLRVRQCLGNLVSNAVKFTPAG-QIRVRVTCEAGDQPDRMLAKIIVSD 360

Query: 726 NGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  +   +   +F  F         +  G GLGL+I      + GG VS+ S++   +T
Sbjct: 361 TGVGMGPAVLARIFTPFEQADPTIARRTGGTGLGLNITRRLAQMMGGSVSVRSTEGKGST 420

Query: 784 IN----CRIPS 790
                 CR+PS
Sbjct: 421 FTLTFGCRLPS 431


>gi|116694330|ref|YP_728541.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113528829|emb|CAJ95176.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a PAS sensor domain [Ralstonia eutropha
           H16]
          Length = 503

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 144/364 (39%), Gaps = 35/364 (9%)

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-----HIRNIAATCSRYYNESD 495
           D +   V    PDG I   N  + +       +   G      H  ++  T  R+ +   
Sbjct: 4   DGIPHIVFTAKPDGWIDYCNQRWSTYTGLTLEQTQLGAWQTVVHPDDMQGTSKRWRSAHA 63

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLPNAQ-----TMLTFVNVTD 547
               +             L+  L   SD      +    P  +          T  ++ D
Sbjct: 64  SGCEYE------------LEFRLRRASDGAYRCHLARGAPFKDRDGNIVKWFATCTDIED 111

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             RA+ A           +  K+ F+  +S+ELRSPL  I+GF  L+ +       ++Q+
Sbjct: 112 QKRAQAAAEGA-------NRAKSDFLSSMSHELRSPLNAILGFAQLMASDSPPPPPAQQA 164

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  +   LL L+N++LDLA ++AG   L+   + L + L E    +  +  +  +
Sbjct: 165 S-IDQILKAGWHLLELINEVLDLAKIEAGQASLSPEPVSLAEALRECHAMVEQQALKRGV 223

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R++  S        ADR RL QI   +LSNA+ ++    TV +           SV++ G
Sbjct: 224 RMRFPSFNFPCFVRADRTRLKQILLNLLSNAIKYNRDQGTVEVSVTA-GDRIRISVRDTG 282

Query: 728 SSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           + +  +    +F  F       G   G G+GL + +  + L GG +   S+ E  +    
Sbjct: 283 AGLAREQLAQLFRPFNRLGQEAGPEEGTGIGLVVAKRLVELMGGSIGAESAVEAGSVFWV 342

Query: 787 RIPS 790
            +P+
Sbjct: 343 ELPA 346


>gi|254445328|ref|ZP_05058804.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259636|gb|EDY83944.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 979

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 13/274 (4%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           +S S L+  II       ++ F+       +E  L    E    A++ K+ F+  +S+E+
Sbjct: 418 VSLSRLQTIIIAGLIMALVIFFLYYQIEHESEADLILAKERAEAANQAKSEFLAVISHEI 477

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PL +++G++DLLK++    LN KQ   ++ I +   ILL +V DILD + +     +L
Sbjct: 478 RTPLQSVLGYSDLLKST---PLNEKQRSCLDTIQSEGKILLRIVQDILDFSNLRKANFEL 534

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
            Y  + L  L+ E  ++I        ++  +    K+   V +D  RL Q+   +  N++
Sbjct: 535 EYGPVRLRRLIEETFRTIKPMADRKGLKASLEIAAKVPELVQSDGVRLRQVLLNLFGNSV 594

Query: 700 DFSSKGSTVILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--R 751
            ++ +G  V+LKA  + G+        F + + G  I E     +F  F+   H  +  R
Sbjct: 595 KYTEEGE-VLLKAYFEKGNAGEELPLKFEILDTGVGIKEADLGRLFEPFIQLEHSSKFPR 653

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G GLGL+IV   + L GG + + S     +   
Sbjct: 654 EGAGLGLAIVNRIVELMGGRIDVESEVGKGSRFT 687


>gi|304320353|ref|YP_003853996.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299255|gb|ADM08854.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 575

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 10/233 (4%)

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K+ F+  +S+E+R+PL  I+G  + L  S   +L        E I  S  +LL ++N
Sbjct: 186 SRAKSVFLATMSHEIRTPLNGILGMAEALAAS---ALPEDSRSKAETIRDSGALLLQMLN 242

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           + LDL+ ++AG ++++ +   L+  +  V    A +     +      D  L      D 
Sbjct: 243 NSLDLSKIEAGKLEIDKAPFRLDRAIERVHALFAQQARNAGLTFTTDIDRSLPMLREGDE 302

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRF 742
           QRL QI + ++ NA+ F+  G  V +   R  G  D + SVK+ G  + ++    +F  F
Sbjct: 303 QRLTQILTNLIGNALKFTQSGG-VTIGLHRGKGATDIVLSVKDTGIGMSDEQQAKIFMPF 361

Query: 743 VSNA---HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
                     +  G GLGLSIV++     GG V + S     +  +  +P  E
Sbjct: 362 TQAEGATTTRRFGGTGLGLSIVKALTAQMGGEVILKSVAGVGSEFSVCLPLPE 414


>gi|255975712|ref|ZP_05426298.1| sensor histidine kinase [Enterococcus faecalis T2]
 gi|255968584|gb|EET99206.1| sensor histidine kinase [Enterococcus faecalis T2]
          Length = 506

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 151/382 (39%), Gaps = 31/382 (8%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 145 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 198

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIIT---SFDDERKSLQGTLELLSDSVLEYSI 530
              G   +N+ +       ++D   L   ++    S   E    QG   L  D  L Y  
Sbjct: 199 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRY-- 253

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +   +A          D  R  +            ++++  FV +VS+EL++P+T+++GF
Sbjct: 254 LDDQSANDYQVLGIAYDLTRVRQL-----------EKMQKDFVSNVSHELKTPVTSLLGF 302

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T+ L             Q++  +   +  L  L+ +IL+L+   A  +      I L   
Sbjct: 303 TETLIDGAKED-PKVLDQFLHIMQKDAQRLQQLIQEILELSRGGA-TIPYAEQEITLEKF 360

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E+  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +
Sbjct: 361 ITEILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITI 419

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLH 768
             A +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L 
Sbjct: 420 SYAIENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELL 479

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG ++I S     TT    +P 
Sbjct: 480 GGKIAIDSHLGLGTTFTITLPL 501


>gi|170761017|ref|YP_001788882.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408006|gb|ACA56417.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 469

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E++ + +  +  F+ +VS+E+RSP+T+I GF   +    +   N  Q+ Y++    
Sbjct: 235 NSMAESIEQVESNRRLFISNVSHEIRSPITSIKGFIGGILDGIVPEEN--QNYYLKLTYE 292

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L  L+ND+LDL+ ++ G +KL+   I LN+++        TK+ +  +++ V  + 
Sbjct: 293 EIQRLTRLINDLLDLSAIEEGHLKLDLEEIDLNEIIRTSVIKFETKIRDKKLKVDVSLED 352

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                VAD+ RL Q+   +L NA+ ++++G  V L         I S+ N+G  I ++  
Sbjct: 353 DKVYVVADKDRLTQVVINVLDNAIKYANEGGNVKLNTKIKGSKVIVSIFNDGPVISDEDI 412

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K +++RF         +   GLGLSIV S +  HG  + +++S EG  T N  I
Sbjct: 413 KHIWDRFYKADKARSSKVSTGLGLSIVRSILTQHGEDIWVNNSPEGGVTFNFTI 466


>gi|134292639|ref|YP_001116375.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135796|gb|ABO56910.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1129

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 157/393 (39%), Gaps = 25/393 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVK-VQGETID-----HLSEGVAVFGP-DGRIKLSNPAFR 464
            +W    L  +  L   +   ++ ++ E  +     H   G+ +    DG   + N A R
Sbjct: 371 LLWSAIVLFDRRALRPAHRRAIRLIESEAFNRTLARHAPAGLLLLSAADGETMVHNDAVR 430

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
           +       +   G  I +     +   +           +   D  +  L   +      
Sbjct: 431 AYDGGAGGQ-RLGKRIWDAYRERAAAGDGRLDVMQHELAVEQADHGKVYLALQVVRTMFH 489

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            ++           + T  +VT     E  L E   A   A++ K++F+  +S+E+R+PL
Sbjct: 490 GVDV---------LLCTLTDVTARKLTEDKLKEARTAAEDANKAKSTFLATMSHEIRTPL 540

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             I+G  +L+  ++L        + ++ + +SS  LL+ +ND+LDL+  ++  M L    
Sbjct: 541 NAIVGNLELMARAQLPLAE---RRRLQTVMSSSDALLHTINDVLDLSKAESNQMALEAVP 597

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSS 703
             L  +L+EV           ++R++ +    LG  +V D  R+ QI S ++SNA+ F+ 
Sbjct: 598 FDLRAVLHEVAAIFRALADAKHLRLECVIAAGLGDGYVGDPARVRQIVSNLVSNAIKFTE 657

Query: 704 KGSTVI--LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLS 759
            G   +  L AA         V++ G  I  D   ++F+ +V        +  G GLGL 
Sbjct: 658 HGRVTVEALPAAVPGRGVEIVVRDTGIGIEPDSMPTLFDVYVQTDASIYRRFGGTGLGLP 717

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +      L GG V++ S           +P  +
Sbjct: 718 LCRRLARLMGGDVTVESRPGAGAVFTASLPLAD 750


>gi|296389616|ref|ZP_06879091.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 868

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 124/726 (17%), Positives = 244/726 (33%), Gaps = 83/726 (11%)

Query: 125 IKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG-----RVSGSCAFLRILSLDGIYSELA 179
           + L +   KL++  Q+     E+    + +  G      V       R  +L     EL 
Sbjct: 17  VALEEERHKLQRINQALIGRIESSAAQSDEAYGAFQYSVVLAEQVRERTDALSQAMLELK 76

Query: 180 E----TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
                 +    +            +S+       D    I+  N  ++       I  + 
Sbjct: 77  ASNQLLSDARLRAETAHQHLLDAIESISDAFVLFDPQQRIVLFNERFR----ALWIDSRA 132

Query: 236 AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNSFGEAGIAID 294
            IG   +  +     R       E+   +  +     + +  ++  R     G A +  D
Sbjct: 133 RIGPGMRRAELHRLARSGGLIVEEQRGGDQQTLYRLRDERWLRMSERPTRDGGLAVLYSD 192

Query: 295 VSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
           V++         E  +  +       + NL+  +A+   +  L+  NR F+EL  +  A 
Sbjct: 193 VTEIKLSETARREQALAQKSHLLQRAVDNLSQGVAMVGADGVLELWNRRFLELCGL--AP 250

Query: 346 LATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT 405
           +A + +  E++         P   +            + S        L +G+ L +   
Sbjct: 251 IAGHRAFAEVMAESELPLLTPRSQD-----------SQGSPLSAREQRLFDGRVLEIRTH 299

Query: 406 SNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS 465
           + P GG +  F ++T +           +      D +   +A    +   + +N  +  
Sbjct: 300 ALPTGGFVNTFTDITERYRHAEALRASERWIRLITDQVPALIAYLSDELVYEFTNKVYEE 359

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
            ++     +  G  +R++         E       A    +F+    +L G    +  S 
Sbjct: 360 WYRWPSGSML-GRCLRDVHGAEHCRRLEPYFERALAGESVTFEIAETALSGEERYMQRSY 418

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------------- 565
           +         A   +   ++T+  R   AL +  + L +                     
Sbjct: 419 VPNRQADGRVAGLFVLIRDITERRRTAEALHQAYQNLEQRVRERTAELTTLNDQFKREIH 478

Query: 566 -------------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                              +  K  F+  VS++L  PL     FT  L+    GS     
Sbjct: 479 ERSQVEARLREAKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALQER--GSATRDN 536

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V  IS S   + NL+  ++D++ +DAG++  + +   L +LL  +            
Sbjct: 537 EALVNNISHSLEDVENLLGTLVDISKLDAGVITPDIAPFELGELLGNLAAEYRQVAASEG 596

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+  ++ G L    +D+Q L +I   +LSNA+ ++ +G  V+L   R        V + 
Sbjct: 597 LRLDFVACGAL--VRSDQQLLARILRNLLSNAIRYTPRG-RVLLGCRRHRQRLSIEVWDT 653

Query: 727 GSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F  F     +   Q RG+GLGL+IV+    + G  V + S     +  
Sbjct: 654 GVGIAADKLGEIFQEFKRGESQRCHQDRGLGLGLAIVDKIARMLGHRVRVGSLPGKGSCF 713

Query: 785 NCRIPS 790
              +P 
Sbjct: 714 AIEVPL 719


>gi|294498816|ref|YP_003562516.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294348753|gb|ADE69082.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 475

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 147/365 (40%), Gaps = 25/365 (6%)

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           V  P+G + + N A   L     + +     I N                +      + +
Sbjct: 110 VISPEGDLIMGNEASERLRSNLLDLIDGWIPIENEVRKERIKAPRPSFEHIEGVKGQNGE 169

Query: 509 DE--------------RKSLQGTLELLSD-----SVLEYSIIPLPNAQTMLTFVNVTDSV 549
            +              +    G L +  D      +L++ +I + +   +   V +  S 
Sbjct: 170 GKIDIDLMMAGEPIFYKGQFLGMLYIGKDVSFLYQLLKWLLIIMLSLTVLFVGVAIYISR 229

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
              +      E   +  +    FV   S+ELR+PL+ ++   + L+  +  + +    + 
Sbjct: 230 LMSKRAMVPIETAFQKQK---EFVADASHELRTPLSVMLSSINALEMQEEVTEDPFSKKL 286

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  + A    + +LV+D+L LA  D+  ++       + D + +V +S+ T     +I +
Sbjct: 287 INNMKAEVKRMTSLVSDLLTLARSDSNKVEKAMMPFDITDAVQKVMESVETLAISKHIDL 346

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           ++ +  KL     D++RL Q+   +L NA+ +++   +V ++  +   + I  V++ G  
Sbjct: 347 QLDTPEKL-VVTGDQERLTQLIYILLDNAIKYTTPHGSVNIQVVQHGSECILKVRDTGVG 405

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F+RF        R   G GLGL+I +  +  H G + + S  E  +T   R
Sbjct: 406 IHPDEKDRIFDRFYRADKSRSRQMGGHGLGLAIAKWIVETHKGKIDVESEQEKGSTFTVR 465

Query: 788 IPSKE 792
           +P  +
Sbjct: 466 LPMSQ 470


>gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500]
          Length = 1016

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 12/228 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E   KA++ K+ F+ ++S+E+R+PL +IIG  +LLK      L + Q + +     SS 
Sbjct: 180 KEEAEKANKAKSDFISNMSHEMRTPLNHIIGSLELLKE---FPLTTDQKELLNISQQSSE 236

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG--K 676
            LL +VN+ILDL+ V+ G   LN S   L   L +   +IA   H+  + + + S     
Sbjct: 237 SLLFMVNNILDLSKVEQGKTVLNLSIFNLVSFLEDSIGAIAPNAHQKGLMVGLYSTPCSS 296

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVKNNGSSIP 731
               + D   L QI   +LSNA+ F+SKG   + +  + +  +        V ++G  I 
Sbjct: 297 SIPVIGDVNLLRQILVNLLSNAIKFTSKGEVFIKVSVSPNLNNTSYSTQIEVTDSGIGIK 356

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
                 +F RF            G GLGLSI +  + L GGH+ I ++
Sbjct: 357 PKDFDKLFQRFSQLDTGVNRAYDGSGLGLSICKQLVELMGGHIGIRNN 404


>gi|187734021|ref|YP_001881179.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella boydii CDC 3083-94]
 gi|187431013|gb|ACD10287.1| sensor histidine kinase/response regulator EvgS [Shigella boydii
           CDC 3083-94]
          Length = 1197

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAILPLENSDSPFKDVFSNAH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+S+G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTSEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|89519308|gb|ABD75785.1| putative signal transduction histidine kinase [uncultured
           bacterium]
          Length = 1323

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 162/376 (43%), Gaps = 28/376 (7%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
           + L+  Q   ++   E +A+     RI           +  +  L           T   
Sbjct: 512 DELMDTQQNFLEQAVENIAIAFHSARI----------HEKMQELLEQTQQQAGELQTQQE 561

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
               S+      A I    + +   Q      ++  LE     L + Q         +  
Sbjct: 562 LLRVSNKELEEQARILRESESKLQAQQEELQQTNEELEKQTRTLEH-QKQELGEKNRELE 620

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            A + + EK + L  + + K+ F+ ++S+ELR+PL +++    LL  +K G+L  KQ +Y
Sbjct: 621 NARKLIEEKAKDLELSSKYKSEFLANMSHELRTPLNSLLLLAKLLHENKNGNLTEKQVEY 680

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I A+   LL L+N++LDL+ V+AG M LN   + L  L + V+Q+ A    E  +++
Sbjct: 681 ARTIHAAGADLLELINEVLDLSKVEAGKMVLNIEEMSLKGLASYVEQNFAHVAEEKGLKL 740

Query: 670 KVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI-------- 720
           ++  +D   G    DRQR+ QI   +LSNAM F+ +G  V +  AR     +        
Sbjct: 741 RIELTDSLPGCIRTDRQRVEQIVKNLLSNAMKFTREGE-VGVYIARPAAGVVLSHSGVLP 799

Query: 721 -----FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
                 SV + G  IPED  + +F  F         +  G GLGLSIV  F  L GG + 
Sbjct: 800 HKAIAISVSDTGIGIPEDKQRLIFEAFQQADGTTSRKYGGTGLGLSIVREFTKLLGGEIH 859

Query: 774 ISSSDEGVTTINCRIP 789
           + S +    T +  +P
Sbjct: 860 LRSEEGNGCTFSLYLP 875


>gi|56750627|ref|YP_171328.1| two-component system sensor histidie kinase [Synechococcus
           elongatus PCC 6301]
 gi|56685586|dbj|BAD78808.1| two-component system sensor histidie kinase [Synechococcus
           elongatus PCC 6301]
          Length = 628

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 164/406 (40%), Gaps = 38/406 (9%)

Query: 410 GGTIWMFENLTVQVDLETKYN----TLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFR 464
           G  I  F ++  Q++     N    T  K + ET+   +++G  +   D  + L NPA  
Sbjct: 211 GELIASFNDMAEQLEGYAAQNIDELTSEKAKLETLVSTIADGALLLDADLNLVLVNPAAI 270

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++  E   L     I ++ +  ++  ++          I + D E   L+ TL   S+ 
Sbjct: 271 RIFGWEGRSLKGDDVIDHLPSPLAQELHDP------LKAIANGDREAVELRLTLPERSNR 324

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +   +  + +                 R          + +E K+ F+ +VS+ELR+PL
Sbjct: 325 TVRILVSNVLDTARANVKGIAVTVQDITRE--------VELNEAKSQFISNVSHELRTPL 376

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            NI  F + L          ++ +++   +  +  L  LVND+LD + +++   + N+  
Sbjct: 377 FNIKSFIETLHDYGDDLSEEERREFLSTANHETDRLTRLVNDVLDPSWLESNR-RYNFEG 435

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           I L   + +  ++      E  I ++      L +  A+   LLQ+F+ ++ NA+ F++ 
Sbjct: 436 IDLVQPIEQTLRTYQLNAREKGIELRSEIARDLPAVRANYDLLLQVFANLVGNALKFTAS 495

Query: 705 GSTVILKAARDNG-----------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           G  V ++A                      +    + + G  I  +  +++F+RF    +
Sbjct: 496 GGCVAMRAYLVGQPLRTEAVNHSEIVSSLPNIRIEINDTGIGIDAEDQEAIFDRFFRVEN 555

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           R     G GLGLSIV + +  H   + + S     TT    +P  +
Sbjct: 556 RVHTLEGTGLGLSIVRNIVEKHQSRIHLISEVGIGTTFWFDLPIYQ 601


>gi|229132830|ref|ZP_04261675.1| hypothetical protein bcere0014_17590 [Bacillus cereus BDRD-ST196]
 gi|228650657|gb|EEL06647.1| hypothetical protein bcere0014_17590 [Bacillus cereus BDRD-ST196]
          Length = 351

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPV--EKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++       +T  L+  L ++  +      E  + + + 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKELELDLD 229

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D       AD++ + Q++  ++ N++ F+  G T+ +           S+ + G  I E
Sbjct: 230 MDK--VCVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    RIP+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHKGKIKVESVEGNGTEFIVRIPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|90413156|ref|ZP_01221152.1| putative sensor histidine kinase FexB [Photobacterium profundum
           3TCK]
 gi|90325847|gb|EAS42299.1| putative sensor histidine kinase FexB [Photobacterium profundum
           3TCK]
          Length = 798

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 147/379 (38%), Gaps = 17/379 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  + + + +      +    +D   + +      G     N A   L    E  L  
Sbjct: 138 NEVYQRENAQLELAEQSALLKSFLDASPDLIYYRNEKGEFSGCNRAMAELTGKTEKGLVG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T     +   +    E+D       +  +++   +   G       ++ E   +P    
Sbjct: 198 LTPWDVYSEEAAIKIVETDEQVFQQNVSLTYEQWLEYPDG-----RKAIFELRKVPFYRR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 +        ER   +  +A  KA   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 253 DGQRLGLMGFGRDITER--KQYQDAQEKASRDKTAFISTISHELRTPLNGIVGLSRMLLE 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q  Y+  +  S+  L N+ NDI+D+   D   ++L    +  +D + E++ 
Sbjct: 311 T---PLNDEQRGYMRTVHVSAITLGNIFNDIIDMDKSDRRRLELMPKPLDFHDFITEMEN 367

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVIL---KA 712
             +    +  +R  +    KL +++  D  RL Q+   ++ NA  F+ +G  ++    + 
Sbjct: 368 ISSLMAEQKGLRFDLERLTKLPAYIEVDSTRLRQVLWNLIGNATKFTKEGGVILSVSSEI 427

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHG 769
                +  F V+++G  IP      +F  +      +      G G+GL++    + L G
Sbjct: 428 FEHEAEITFDVEDSGIGIPASEVDKIFAMYYQVKQGSDNLHAVGTGIGLAVSRQLVQLMG 487

Query: 770 GHVSISSSDEGVTTINCRI 788
           G + ++S     +T    I
Sbjct: 488 GDILVTSDIGEGSTFTVTI 506



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           +++  + +E+ +      +L+   ++ K   D+   L+++R++ G+    N +     E 
Sbjct: 131 IAMHDLENEVYQRENAQLELAEQSALLKSFLDASPDLIYYRNEKGEFSGCNRA---MAEL 187

Query: 229 EGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV 280
            G   +  +G +   ++ EE   +++ +   E+ F + VS           G    +++ 
Sbjct: 188 TGKTEKGLVGLTPWDVYSEEAAIKIVETD--EQVFQQNVSLTYEQWLEYPDGRKAIFELR 245

Query: 281 RVL------NSFGEAGIAIDVSKEITVNDQ 304
           +V          G  G   D+++     D 
Sbjct: 246 KVPFYRRDGQRLGLMGFGRDITERKQYQDA 275


>gi|85702823|ref|ZP_01033927.1| sensory box histidine kinase/response regulator [Roseovarius sp.
           217]
 gi|85671751|gb|EAQ26608.1| sensory box histidine kinase/response regulator [Roseovarius sp.
           217]
          Length = 734

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 152/383 (39%), Gaps = 17/383 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   E   +T  ++    ++   + V V GPDGRI+ +N     L +   +  +P   
Sbjct: 183 SYRRQAEQSTSTSNRL-ATILNTSQDAVLVVGPDGRIEDTNARAGDLLELSGDPATPVKL 241

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT- 538
              +    +    +    ++           R+ +        +   E S       QT 
Sbjct: 242 SEFLFYKQADGRLKPLDANVLRETCVDGPVRREDVIVRNFAGREFAAELSADLAKRGQTT 301

Query: 539 --MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    ++++ + AE  +    +     +  K  F+  +S+E+R+PL  I+G  +LL  
Sbjct: 302 ICICFVRDISERIAAEAEIASSRDRALAGERAKARFLAMISHEMRTPLNGILGALELLDD 361

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L   Q ++   + +S  +LL  + D LDL    A  + L  +   L+ LL E+ +
Sbjct: 362 T---GLTPDQEKFTRIMRSSGQLLLTQITDALDLTQAAARQIVLRPAAFDLDQLLEELVE 418

Query: 657 SIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +           +++      LG  + DR R+ Q+   ++SNA+ F+  G  + L   R 
Sbjct: 419 TQQGPAQARGNALRLRRPHSGLGRSIGDRARIYQVLLNLVSNAIKFTKDGE-ITLDVTRH 477

Query: 716 N------GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINL 767
           +       +  F V + G  I E     VF+ F  V +    +  G GLGL I    + L
Sbjct: 478 DPSQSGLDEVEFQVTDTGIGISETDLPKVFDDFMRVQDISGDRPEGTGLGLGIARQLVKL 537

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
             G++ + S     +    R+P 
Sbjct: 538 MKGNIGVESELGEGSLFWVRLPL 560


>gi|283852275|ref|ZP_06369547.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572357|gb|EFC20345.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1072

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 168/437 (38%), Gaps = 41/437 (9%)

Query: 383 KSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTL---VKVQGET 439
           +      + +    GQ L   +        +   +N T++  +  +   L    +     
Sbjct: 377 RELRRLAEAFARMTGQ-LRQALAGLTEQHAVIAGQNRTLEARVAARTAELTHMHRRLRAI 435

Query: 440 IDHLSEGVAVFGPDGRIKLS-NPAFRSLWKTEENRLSPGTH--IRNIAATCSRYYNESDG 496
            D +   V V   D ++  + +   R++  + E  L    H   R + A C   +   D 
Sbjct: 436 FDAIPGYVHVVDRDLKVVDAGDKLLRAMNLSREAVLGRPCHEVFRGLDAACDCCHLAGDA 495

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF----VNVTDSVRAE 552
            +       S  +E         LL    L YS   +     +       ++V+    AE
Sbjct: 496 AEAGGCARPSTPEEEA-------LLGMPFLAYSAPIVGEDGRVWGHIECLMDVSRLREAE 548

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R L    E   +A+  K+ F+  +S+++R+PL +IIG TD+   S+   + +     + +
Sbjct: 549 RKLAAAKEEAEEANRAKSDFLAKMSHDIRTPLNSIIGLTDITLQSR---VPADVRDNLAH 605

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  ++  LL LV D+LD +  +A  + L      L  LL  V +S   +     +++++ 
Sbjct: 606 VLEAARSLLELVGDLLDFSRAEAKGLTLKEEDFSLARLLAVVVRSFTAQARFKGVKLRLR 665

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------------- 717
            D      V  D  RL QI + ++ NA+ F+  G  V L+                    
Sbjct: 666 QDRACPRVVRGDPARLRQILANLVGNALKFTEHG-QVALRVEPAARPAALGPAGPGADGA 724

Query: 718 --DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                F+V + G  I  +   ++F  F   +     +  G GLGL+I    ++L GG + 
Sbjct: 725 AVWLRFTVADTGLGIAAEALATIFEPFRQASGDIAARFGGSGLGLAICRQMVDLMGGVIE 784

Query: 774 ISSSDEGVTTINCRIPS 790
           ++S+    +     +P 
Sbjct: 785 VASTPGEGSVFAFTVPL 801


>gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
 gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
          Length = 1227

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 7/244 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQS 607
            RA      +   L   D  K +F  +VS+E R+PLT ++G   ++L   +   L  +  
Sbjct: 329 QRAYEQERARAAELAALDRAKTNFFANVSHEFRTPLTLVLGPMEEMLADRE---LPERYL 385

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  +  +   LL LVN +LD + +++G +   Y    L+D  + +  +  +      +
Sbjct: 386 DRLTVMHRNGLRLLKLVNTVLDFSRLESGRLAARYQPTDLSDYTSRLASTFRSATERAGL 445

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R+ V           DR    +I   +LSNA+ F+  G  + ++   D+G  +  V + G
Sbjct: 446 RLVVDCPPLPAPVYVDRDMWEKIVLNLLSNAVKFTFDGE-IRVRVRADDGAAVLEVTDTG 504

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +    VF RF     A      G G+GL++V   + +HGG V+  S  +  TT  
Sbjct: 505 VGIAPEELPQVFERFHRVAGARSRTHEGTGIGLALVRELVEMHGGTVTAHSVVDRGTTFT 564

Query: 786 CRIP 789
             +P
Sbjct: 565 VTMP 568


>gi|209525035|ref|ZP_03273579.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
 gi|209494444|gb|EDZ94755.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
          Length = 397

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 113/257 (43%), Gaps = 7/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N    ++   + +  +   +  +   +L+  ++ +   +  +++ELR+P+T + G+ + +
Sbjct: 139 NLSERMSSSEIHELNQLAMSFNQMASSLQDVEQKRRELISDLTHELRTPITVVRGYLEEM 198

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              ++        Q     +  +  L  L+N++ +L+ V++G + +N   + L  LL  +
Sbjct: 199 AEGRISPSPDIYQQL----TKETKRLERLINNLQELSKVESGYLPINPQPLALRPLLESL 254

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q  + ++ E    +++    +L   +AD  R  QI   +L NA+ ++  G  + ++   
Sbjct: 255 VQRFSDQLLEEGPMLELDFSEELPLALADVDRTEQILVNLLGNAIRYTKHG-LIKIEVYT 313

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
             G     V + G  I E     VF RF        R   G G+GL+I    + L GG +
Sbjct: 314 HGGYLFVDVSDTGIGISEADLPHVFERFWRADRSRSRNYGGTGIGLAITRRLVELQGGEI 373

Query: 773 SISSSDEGVTTINCRIP 789
            +SS     +T    +P
Sbjct: 374 FVSSQLGKGSTFTFSLP 390


>gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 1991

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 116/242 (47%), Gaps = 6/242 (2%)

Query: 550  RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            RA     ++ E L   D+ K +F  +VS+E R+PLT I+G  +   +    +L  ++   
Sbjct: 1319 RAYEQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEK--- 1375

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            ++ +  ++  L  +VN +LD + ++AG  + +Y  + L+ +   +  +  + +    +R+
Sbjct: 1376 LDLVRRNALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGLRL 1435

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             V           D +   ++   +LSNA+ ++ +G  + +     +   + +V++ G  
Sbjct: 1436 VVDCPPLPEPLYVDPEMWEKVVLNLLSNAVKYTYEGE-IRVVLRWQDDHAVLTVQDTGVG 1494

Query: 730  IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            IPE+    VF RF            G G+GL++V+  + LHGG +S+ S+    T    R
Sbjct: 1495 IPEEELPRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAFTLR 1554

Query: 788  IP 789
            +P
Sbjct: 1555 LP 1556



 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 16/296 (5%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTM-------LTFVNVTDSVRAERALT----EKN 559
           R   + T++ L+    EY + P    + +               +VRAERA         
Sbjct: 685 RAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTVSQLRQAAVRAERAHVEDTLRFL 744

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SKLGSLNSKQSQYVEYISASST 618
           E  R+A  ++   +  VS++LRSPLT I    +LL+     G   ++  +  + I  S+ 
Sbjct: 745 EESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSAD 804

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            +  L++D+LDLA++DAG + +      +++L+ + ++       E  +++    +  L 
Sbjct: 805 RMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGLI 864

Query: 679 SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCK 736
               D++R+LQ    +LSNA+ F+  G +++L+A  + G  D   SV + G  IP     
Sbjct: 865 -LSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQP 923

Query: 737 SVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F+R+     + +R G GLGLSI +  +  HGG + +  +    +T +  +PS +
Sbjct: 924 HIFDRYWHGV-QNKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLPSGQ 978



 Score =  240 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 3/242 (1%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A     ++ EAL + D  K +F  +VS+ELR+PL  ++G  +         L  KQ +  
Sbjct: 314 AYEEEKKRAEALAEIDRTKTAFFNNVSHELRTPLALMLGPIEDGLEDTEYPLPPKQRERQ 373

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E +  +   L  LVN +LD A ++AG  + ++    L+ L  E+  +  + M    + + 
Sbjct: 374 EVVHRNGLRLRKLVNMLLDFARMEAGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMV 433

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V       +   D     ++   +LSNA+ F+ +G  V +           +V++ G+ +
Sbjct: 434 VDCPVLPEAVYVDPAMWEKVVLNLLSNALKFTLQGE-VRIALRWLGDRVELTVQDTGTGM 492

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE     +F RF  V  A      G G+GL++V+  + LHGG V++ S     +T    +
Sbjct: 493 PEAELPRIFERFHRVEGARGRSHEGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSL 552

Query: 789 PS 790
           P+
Sbjct: 553 PA 554



 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 124/300 (41%), Gaps = 10/300 (3%)

Query: 501  AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL---TE 557
             AI       R   + T+E L     +Y + P    + ++      D  R  R +     
Sbjct: 1691 RAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDMARVRREVVRNEI 1750

Query: 558  KNEALRKADEIKNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQSQYV----EY 612
            + + LR++  +++ F+  VS+ELR+P++ +   F  L+++      +    + V    + 
Sbjct: 1751 EKKVLRESVRVRDEFLNLVSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVKAQT 1810

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
                   L  LV  +LD +    G +KL    + L+ + + V +   +K       + + 
Sbjct: 1811 TQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVLTLN 1870

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            +   +  +  DR RL Q+   +L NA+ F   G  + +   RD+   + +V ++G+ I  
Sbjct: 1871 APSPVMGY-CDRARLHQLLEGLLDNALKFG-AGKPIEVAVWRDSDHALLTVMDHGAGIEP 1928

Query: 733  DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +  + +F RF          G GLGL I       H G + +  ++ G  T    +P  E
Sbjct: 1929 EDEERIFGRFERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALPLNE 1988


>gi|52140833|ref|YP_085996.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51974302|gb|AAU15852.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 484

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 126/273 (46%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKECIEVNLQLHASPLYVKADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  V +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  I  HGG++   S     T+I   +
Sbjct: 444 LGLAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|305666816|ref|YP_003863103.1| two-component sensor histidine kinase [Maribacter sp. HTCC2170]
 gi|88709040|gb|EAR01274.1| two-component sensor histidine kinase [Maribacter sp. HTCC2170]
          Length = 496

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 123/281 (43%), Gaps = 3/281 (1%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           + + GT+    +  LE  I    N +     V           +    + ++  D ++  
Sbjct: 218 RLMTGTVRRFREGDLEARI---ENPKDSDIEVFANTFNEMADTIVGNIDKMKSVDLLRRE 274

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
            + +VS++LR+PL  + G+ + L+         ++ +Y++    +   L  L+N + + +
Sbjct: 275 LIANVSHDLRTPLAVLKGYIETLQIKNDTLSEREKQEYLQITHDNVDKLSKLINQLFEYS 334

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++A  +        + +L +++         + +IR+++ +  +     AD   + +  
Sbjct: 335 KLEAEQITPVKEPFSITELSHDLIAKFEVLAQKKDIRLRLNNPEENCMVYADVSLVERAL 394

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             ++ NA+ ++     V L     N     ++ + G+ I ++    +F+R+       ++
Sbjct: 395 QNLIENAIKYTEPKGEVTLSLNHINDQIEINITDTGAGIAKNEQPFIFDRYKQVNKNTKK 454

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +G GLGL+IV+  ++LH   +++ S  +  ++    +P+ +
Sbjct: 455 QGYGLGLAIVKKIMDLHDTTITVLSKPKEGSSFIFNLPAYQ 495


>gi|299143989|ref|ZP_07037069.1| alkaline phosphatase synthesis sensor protein PhoR [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518474|gb|EFI42213.1| alkaline phosphatase synthesis sensor protein PhoR [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 472

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 118/245 (48%), Gaps = 7/245 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +  + L    + + K ++IKN F+  VS+ELR+PLT+I G+  +LK++K    + +Q
Sbjct: 222 ELGQLSKTLNTMAQEIVKKEQIKNDFISSVSHELRTPLTSIKGWAVVLKSAK---EDERQ 278

Query: 607 --SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
                +  I   S  L  +V ++LD +   +G ++L      + D  N+V + +  +   
Sbjct: 279 LIEDGLNIIENESDRLAKMVEELLDFSRFISGRIQLEKDAFNIADTCNDVAKQMKPRAEL 338

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           N +   +         V D  R+ Q+   ++ NA+ F+S+   V LK+  ++  F+  V 
Sbjct: 339 NKVDFIIDISEDKAIIVGDENRIRQLLINLIDNAIKFTSENGWVKLKSYVEDEKFVILVS 398

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +NG  I +     V  +F    H       G+GLS+ +    LHGG V I S ++  TT+
Sbjct: 399 DNGMGISKKDLAHVKEKFYKGKHSKSH--SGIGLSVSDEIAKLHGGKVEIFSEEKIGTTV 456

Query: 785 NCRIP 789
              IP
Sbjct: 457 KVTIP 461


>gi|158521942|ref|YP_001529812.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158510768|gb|ABW67735.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 591

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 146/373 (39%), Gaps = 27/373 (7%)

Query: 424 DLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            L+ +  T ++ + E       ++E V   G + +I   N A  +  +     L+     
Sbjct: 236 RLDDRIKTAIRQKNELNAVFSSMTEAVIAIGSNEKILRVNHAAETFLRKSRQALNGTFLY 295

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I     R ++     +       S  D    L G   +++   +  S +     + M 
Sbjct: 296 EVI-----RNHDFKKFVESAVKTDRSEADLPFELDGKTHIIN---IHASALVDETGERMG 347

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             + + D  R  +            + ++  F  +VS+EL++PLT+I GFT+ L      
Sbjct: 348 ALLILNDVTRMRQL-----------ETMRKDFAANVSHELKTPLTSIQGFTETLLAEPSL 396

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDA--GIMKLNYSTIVLNDLLNEVKQSI 658
             N+   + +E I+ ++  L  +++D+L L+ ++        N+    L D++N      
Sbjct: 397 LDNAHVVRCLEIIANNTKRLTTIIDDLLKLSEIEHADRQKDFNFQEAPLADVINSAAAIC 456

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
              +    I+++      L +   D   L      ++ NA+ +S   S V + A     +
Sbjct: 457 RPDLDSKQIKLESDCPADL-ALPIDPFLLELALVNLVENAVKYSPNNSEVGISAEDKGRE 515

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
              SV ++G+ I E     +F RF        R   G GLGL+IV+    +HGG + + S
Sbjct: 516 VHVSVIDHGTGIAEAHIPRIFERFYRVDKARSRELGGTGLGLAIVKHVAQIHGGRIEVQS 575

Query: 777 SDEGVTTINCRIP 789
           +    +      P
Sbjct: 576 TPGKGSAFTLIFP 588


>gi|117621496|ref|YP_855520.1| proline sensor PrlS [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
 gi|117562903|gb|ABK39851.1| proline sensor PrlS [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
          Length = 1166

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 165/417 (39%), Gaps = 35/417 (8%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++ S  +G  + + E  T+  +    +     +    I+H+ +G++V   + ++   N
Sbjct: 597  RLVLASALQGRNMQLEEIATIVDEASDVFRFNRGLLQGAIEHMGQGISVVDRELKLVAWN 656

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-DLFAAIITSFDDERKSLQGTLE 519
              +  L+      +  G  I  I    +       G  +   A   +F           E
Sbjct: 657  RRYIELFHYPPGLIQVGRPIEEIIRYNAEQGLCGPGDVEAHVARRVAFMQRGSQHISARE 716

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR---------------- 563
                 V+E    P+P    ++TF ++T    AER L E NE L                 
Sbjct: 717  RPDGRVIEMQGNPMPAGGFVMTFTDITPFRDAERVLREANEHLEARVAERTHELSELNRQ 776

Query: 564  ---------KADEIKNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGSLNSKQSQYVEYI 613
                     +A+  K+ F+  VS++L  PL     F + LL+        ++ +++++  
Sbjct: 777  LLLVNQQVERANHSKSRFLAAVSHDLTQPLNAAKLFTSSLLEMLPPMDEPARIARHIDDA 836

Query: 614  SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              ++    +L+ D+LD++ ++AG  K       L D+ + +K           I+  V+ 
Sbjct: 837  LGATE---DLITDLLDISRLEAGKFKAKKLDFALRDVFDNLKAEFGVLAQAGGIQFSVVE 893

Query: 674  DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
             G   +  +D + L ++    L+NA  ++  G  V+L   R        V +NG  IP D
Sbjct: 894  SG--VAVYSDVRLLRRVLQNFLTNAFRYNP-GGRVLLGCRRLGDKVRIEVWDNGPGIPAD 950

Query: 734  MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              +++F+ F    H    R  G+GLGL+I      + G ++++ S     +     +
Sbjct: 951  KQEAIFDEFSRLDHSRTAREQGLGLGLAIARGIALVLGHNLTLRSWPGAGSVFAITL 1007



 Score = 78.8 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 66/203 (32%), Gaps = 8/203 (3%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           + ++   I++ D+   L   NR ++EL+      +      +E++ +           + 
Sbjct: 636 IEHMGQGISVVDRELKLVAWNRRYIELFHYPPGLIQVGRPIEEIIRYNAEQGLCG-PGDV 694

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +       +  +    H      P+G+ + +     P GG +  F ++T   D E     
Sbjct: 695 EAHVARRVAFMQRGSQHISARERPDGRVIEMQGNPMPAGGFVMTFTDITPFRDAERVLRE 754

Query: 432 LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
             +     +   +  ++       + L N        ++   L+  +H        ++ +
Sbjct: 755 ANEHLEARVAERTHELSELNRQ--LLLVNQQVERANHSKSRFLAAVSHDLTQPLNAAKLF 812

Query: 492 NES-----DGWDLFAAIITSFDD 509
             S        D  A I    DD
Sbjct: 813 TSSLLEMLPPMDEPARIARHIDD 835


>gi|88861247|ref|ZP_01135879.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88816728|gb|EAR26551.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 946

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 6/238 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L + ++ L++A E+K+ F+ ++S+E+R+PLT ++G  +L+    +    S+    V+ I
Sbjct: 464 ELEQISKQLQRASEVKSQFLANMSHEIRTPLTAVMGQAELIINGDIPV--SEIKDEVKII 521

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +S  LL L+NDILDL  ++A  + L+ +   +  L  EV         +  +++    
Sbjct: 522 HNNSLHLLELINDILDLTRIEANKLILDRAPADVVALGKEVVHMFCESAKQKGLKLSFQH 581

Query: 674 DGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                 ++A D+ RL QI   + SNA+ F+ +G  V ++    +    F + + G  +  
Sbjct: 582 FLCTPYYIAMDKVRLKQILINLCSNAVKFTEQGE-VKVEVWPTSSGLKFIISDTGIGMTN 640

Query: 733 DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               ++FN F    +   RR  G GLGL + E   NL GG +S++S     +     +
Sbjct: 641 KQLGNIFNSFTQGDNTISRRFGGSGLGLCLSEQLANLMGGSISVTSELGKGSIFTLHL 698


>gi|291535461|emb|CBL08573.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 478

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 119/261 (45%), Gaps = 5/261 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +  +   +  +      +L      L   +E +  FV +VS++ RSPLT+I G+ + +
Sbjct: 215 NFEAKIDVHSNDEIGYLAASLNYMANELNTLEEDQRKFVSNVSHDFRSPLTSIKGYVEAM 274

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +      Q +Y+  I   +  L  L   +L+L    +  + L+ ++  +N  +   
Sbjct: 275 LDGTIPV--EMQDKYLNIILFETERLNKLTKSLLELNKFGSHGVMLDITSFDINHTIRMT 332

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q+      E +I   +I  G+     AD  ++ Q+   ++ NA+ FS   S + ++   
Sbjct: 333 VQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYNLIDNALKFSHANSAITIETTE 392

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHV 772
            N     SVK+ G  IP+D  K +++RF          ++G GLGLSIV+  I  HG ++
Sbjct: 393 KNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENI 452

Query: 773 SISSSDEGVTTINCRIP-SKE 792
           +  S++   T     +P +KE
Sbjct: 453 NCISTEGVGTEFIFTLPLAKE 473


>gi|166365913|ref|YP_001658186.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
 gi|166088286|dbj|BAG02994.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
          Length = 795

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/361 (25%), Positives = 159/361 (44%), Gaps = 16/361 (4%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
           E ++ L   + ++ P+  I   N A+              +    +    +        +
Sbjct: 163 EFLEQLPLPLLLYSPEAGILYQNQAWCQQIGAAFPANIDKSPFALVNDPLTLPSPTPPLF 222

Query: 498 DLFAAIITSFDDERKSLQGTLELLS---DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
                 +TS       L  T  LLS   +    Y +I   +   +L   ++T+  +  + 
Sbjct: 223 PQRLETVTS------GLAKTWRLLSVPLNWADNYPLIEKTSGLWLLLATDITEQQQYCQE 276

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L  KN  L   + +K+ F+  VS+E +SPLT +IG ++LL+  K+G LN +QS+Y + I 
Sbjct: 277 LAVKNADLVHLNRLKDEFLACVSHEFKSPLTAVIGLSNLLREQKIGELNPRQSKYADLIY 336

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI----K 670
            S   L+ LVND+LDL  ++ G +KL ++ + ++ L   V   I  K  +  + +    +
Sbjct: 337 RSGRQLMALVNDLLDLTRLETGQLKLTFTRVKIDRLCQRVYDIIVDKYPQR-LDLPGSYR 395

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           +  +  L   +AD  RL Q+   +L NA+ F+  G    +K  R      F+V + G  I
Sbjct: 396 LDIESGLDYALADEARLQQMLVNLLDNAVKFTIDGGNFGIKVNRWENWLAFTVWDTGIGI 455

Query: 731 PEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           PE+    +F +F         Q  G GLGL + +     HGG +S  S D   +     +
Sbjct: 456 PEESQHLIFQKFQQLESPFTRQFEGAGLGLLLSQKLARCHGGDLSFVSKDREGSQFTLLL 515

Query: 789 P 789
           P
Sbjct: 516 P 516


>gi|115524300|ref|YP_781211.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115518247|gb|ABJ06231.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 729

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 10/245 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R +  L +  +A       ++ F+  +S+E+R+P+  +IG  DLL       L  +Q++ 
Sbjct: 323 RYQTGLAKSRDAAEMGTRARSEFLAMMSHEIRTPMNGVIGLADLL---VAADLPGEQNKI 379

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              +  S+  LL L+ND+LD + +DA  +++      L+  ++     +A +  E  + +
Sbjct: 380 AATLRESADYLLQLLNDVLDFSKLDANRLEIERIDFGLHRSVHATIDLLAPRAQEKGLSL 439

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVK 724
                  +  S   D  R+ Q+   ++ NA+ F+  GS  ++  A          +F V 
Sbjct: 440 TARIGPNVPDSITGDPARIRQVLFNLVGNAIKFTQAGSVEVVVEAEAAVGNAVRLVFKVI 499

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP +    +F  F        RR  G GLGL+I +  +   GG +S+ S     +
Sbjct: 500 DTGVGIPAESLGLLFREFSQGDSSISRRFGGTGLGLAICKRLVACMGGEISVQSRVGKGS 559

Query: 783 TINCR 787
                
Sbjct: 560 VFRFS 564


>gi|284008705|emb|CBA75378.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Arsenophonus nasoniae]
          Length = 779

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 149/376 (39%), Gaps = 20/376 (5%)

Query: 422 QVDLETKYNTLVK------VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           Q +++ +  T ++      +    +D   + V     +      N A   L    E +L 
Sbjct: 139 QKEMKRREQTQLEFEQQSILLQSFLDASPDLVYYRDENNDFSCCNRAMELLTGRSEKQLI 198

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             T+        +    E+D       +  +++       G       +  E   +P  +
Sbjct: 199 GLTYREIYGEEVAEKELETDEKVFRHNVSLTYEQWLVYPDG-----RKACFEIRKVPFYD 253

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                  +        ER      EAL  A   K +F+  +S+ELR+PL  I+G + +L 
Sbjct: 254 RVGKRHGLVGFGRDITER--KHYQEALENASRDKTTFISTISHELRTPLNGIVGLSRILL 311

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            ++   L ++Q+ Y++ I  S+  L N+ NDI+++  ++   + L+   I  N+ +++++
Sbjct: 312 DTE---LTNEQTNYLKTIHVSAITLGNIFNDIIEMDKIERRKVSLDSQQIDFNEFISDIE 368

Query: 656 QSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
                 +   +++  +     L S  + D  RL QI   ++ NA+ F+ +G   +     
Sbjct: 369 NLSRLLVQPKDLKFILEVKENLPSKIITDATRLRQILWNLIGNAVRFTQQGEIKVRIWYE 428

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGH 771
            +      V ++G  IP++  K +F  +             G G+GL++ +      GG 
Sbjct: 429 GHEQLFIQVIDSGIGIPKEEQKKIFAMYYQVKGSAGGRPETGTGIGLAVSKRLAQSMGGD 488

Query: 772 VSISSSDEGVTTINCR 787
           + ++S+    +     
Sbjct: 489 IQVASTLGVGSCFTVS 504



 Score = 40.3 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 20/157 (12%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE- 229
           L+ +  E+        +      + +   D+   LV++RD+  D    N + +  T    
Sbjct: 135 LEKLQKEMKRREQTQLEFEQQSILLQSFLDASPDLVYYRDENNDFSCCNRAMELLTGRSE 194

Query: 230 ----GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV----- 280
               G+ +++  GE     + E  +++   +         V     G    ++I      
Sbjct: 195 KQLIGLTYREIYGEEVAEKELETDEKVFRHNVSLTYEQWLVYP--DGRKACFEIRKVPFY 252

Query: 281 -RVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLT 316
            RV    G  G   D+++         H  E L N +
Sbjct: 253 DRVGKRHGLVGFGRDITERK-------HYQEALENAS 282


>gi|119475524|ref|ZP_01615877.1| sensory box histidine kinase/response regulator [marine gamma
           proteobacterium HTCC2143]
 gi|119451727|gb|EAW32960.1| sensory box histidine kinase/response regulator [marine gamma
           proteobacterium HTCC2143]
          Length = 560

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 119/248 (47%), Gaps = 12/248 (4%)

Query: 550 RAERALTEKNEALRKADEI-KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           + ER +  ++E   KA  + K++F+ ++S+E+R+P+  +IG  DL+  S++   + +Q  
Sbjct: 163 QQERDIAIQHEQESKAATMAKSAFLANMSHEIRTPMNGVIGMIDLVSKSEM---DEQQID 219

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           ++     S+  L+ ++NDILD + ++AG + +      L+ + NE+        ++  ++
Sbjct: 220 FISTAKRSAESLMIIINDILDFSKIEAGELTIEKIEFDLDQIFNELIHDHRFLANKKGLK 279

Query: 669 IKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIFSVK 724
            ++          V D  R+ Q+ + +LSNA+ F+  GS ++       GD       V 
Sbjct: 280 FELEKHYIHHSKVVGDPHRITQVLNNLLSNAIKFTEVGSIIVRYGLNPLGDHLLLNVKVI 339

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  +       +F+ F        R   G GLGL+I +    L GG +++ S  E  +
Sbjct: 340 DTGIGVSGTSLPYLFDSFSQADMSTTRNFGGTGLGLAITKQLCELMGGSITVHSKLEEGS 399

Query: 783 T--INCRI 788
               + R+
Sbjct: 400 VFQFSVRL 407


>gi|253701742|ref|YP_003022931.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251776592|gb|ACT19173.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 521

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/487 (18%), Positives = 175/487 (35%), Gaps = 23/487 (4%)

Query: 318 AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNP-SNDELLEFLRSANKLPEQLNWKTWKE 376
           A+A+ D    +   N    ++     + +     S     E LRS     E    ++   
Sbjct: 38  AVALLDPQGNISSWNAGAEQITRYRGSEVIGKHFSLLHPKEELRSGAPERELAIARSLGS 97

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMF-ENLTVQVDLETKYNTLVKV 435
                ++  +     W    G TL  I           +F  + + +   +        +
Sbjct: 98  LDLQGWRLKKDGSRFWA---GITLTAIYDQEENLAGFALFAHDDSEKRASDEALLKSRNM 154

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                +   +G+ V   +G I+ +N      +      +  G  I  +        +   
Sbjct: 155 LERLFETAPDGIVVVDGNGVIRRTNQQAEITFGYMREEML-GQRIELLIPERYHKRHRQH 213

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-- 553
             + FA            L G  +   +  ++  + P+        F  + D     +  
Sbjct: 214 RRNYFADPRARKMGIGLELYGRNKDGHEIPVDIMLNPIETPDGTWVFAVIRDITSQRQGE 273

Query: 554 --------ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
                   AL  + E L  ++    SF   VS++LR+PL +IIGF DLL       L+ K
Sbjct: 274 AKILELNLALRNQLEQLGASNRELESFSYSVSHDLRAPLRHIIGFVDLLNAKAANVLDEK 333

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y+E IS ++  +  L++D+L  + +  G  ++    + L  L+ E+   + +   E 
Sbjct: 334 SRHYLEVISDAANKMGLLIDDLLAFSRM--GRSEMMKGWVDLGLLVREIVNDLESDSKER 391

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS--KGSTVILKAARDNGDFIFSV 723
            I+  +     L   + D   L Q+   ++ NA+ F+   + + + + A     +    V
Sbjct: 392 EIQWDI---APLPIVLGDAAMLRQVLINLVGNAVKFTRSREKARIAIGAIDREQETEIFV 448

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           ++NG    E     +F  F       +  G G+GL+IV+  +  HGG V      +G  T
Sbjct: 449 RDNGVGFDEAYASKLFGLFQRLHANEEFEGTGVGLAIVQRIVLRHGGRVWAEGEVDGGAT 508

Query: 784 INCRIPS 790
               +P 
Sbjct: 509 FWFSLPK 515



 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 94/282 (33%), Gaps = 20/282 (7%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSL-DFLVWHRDQAGDILWANISYKKNTETEGIV----F 233
                +  +L   +  F+++ + + ++ V   D  G+I   N   ++ T   G       
Sbjct: 12  TRKQQEPGRLQGDL-PFRLMVEQVKEYAVALLDPQGNISSWNAGAEQITRYRGSEVIGKH 70

Query: 234 QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL------NSFG 287
              +    +L     ++ +  + +L     +     + G+     I          N  G
Sbjct: 71  FSLLHPKEELRSGAPERELAIARSLGSLDLQGWRLKKDGSRFWAGITLTAIYDQEENLAG 130

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDL 343
            A  A D S++   ++ L  +  +L  L       I + D N  ++  N+     +    
Sbjct: 131 FALFAHDDSEKRASDEALLKSRNMLERLFETAPDGIVVVDGNGVIRRTNQQAEITFGYMR 190

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV-YKSSETHKDTWHLPNGQTLHV 402
             +        + E     ++   +  +   +     +  +    +KD   +P    L+ 
Sbjct: 191 EEMLGQRIELLIPERYHKRHRQHRRNYFADPRARKMGIGLELYGRNKDGHEIPVDIMLNP 250

Query: 403 IVTSNPRGGTIW-MFENLTVQVDLETKYNTLVKVQGETIDHL 443
           I T  P G  ++ +  ++T Q   E K   L       ++ L
Sbjct: 251 IET--PDGTWVFAVIRDITSQRQGEAKILELNLALRNQLEQL 290


>gi|229549876|ref|ZP_04438601.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|229304949|gb|EEN70945.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200]
          Length = 591

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PKVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S K   + +  A
Sbjct: 449 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQKNGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|229093771|ref|ZP_04224870.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42]
 gi|228689656|gb|EEL43464.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42]
          Length = 484

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 125/271 (46%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAKSELGKGTSIFFSL 476


>gi|255533254|ref|YP_003093626.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346238|gb|ACU05564.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 713

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 156/381 (40%), Gaps = 23/381 (6%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           +    ++T    +E K   L       +   ++ +     +  I   N +   ++     
Sbjct: 345 LGTVLDITELKQVEEKSARL----AAIVATSNDAIISKTLESVITSWNDSAERMFGYTST 400

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
            +   T  + I A                  +  F+ +R++  G L  +S      +I P
Sbjct: 401 EIIGETIYKLIPADRQDEEPMILTRLKAGERVEHFETKRQTKDGRLIDVS-----LTISP 455

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + ++   +T  +      +ER          + D  KN F+  VS+E+++PLT++     
Sbjct: 456 IKDSHGNITGFSKIARDISERK---------QNDIRKNDFIAMVSHEIKTPLTSMSAILQ 506

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           +L+     S +   SQ ++  +     +  +++  L+++ +++G +++N     + +L+ 
Sbjct: 507 MLQRKFAESEDVLVSQLLDRANLQVKKMNKMISGFLNISRLESGKIQINRQVFNICELIK 566

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           EV   I      + I I+   + +    +ADR+++  + S +L NA+ +S KGS V +  
Sbjct: 567 EVVAEINLTGINHIINIR---ECEDAVVMADREKIDSVLSNLLGNAIKYSPKGSEVTIDC 623

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGG 770
            + +      V + G  I E  C  VF+R+    +    Q  G G+GL +    ++ H G
Sbjct: 624 YKQDSYVCIRVSDRGLGISEADCGHVFDRYYRVESDPISQASGFGIGLYLSAEIVHRHDG 683

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + S     +     +P +
Sbjct: 684 KIWVESEIGKGSQFYFSLPLE 704


>gi|298528974|ref|ZP_07016377.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510410|gb|EFI34313.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 714

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 15/295 (5%)

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS-VRAERALTEKNEALRKA 565
            D E K +  ++++L+  +       L + +       + +   ++   L    EA  +A
Sbjct: 147 LDVEYKEVMDSIQMLATIIFMSVAGALESFELYRNIRQMNNQLTQSNAELRTAKEAALEA 206

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
              K+ F+ ++S+ELR+P+++II    LL        + ++   +     S+  L +++N
Sbjct: 207 SRAKSEFLANMSHELRTPISSIISGLKLLA---PMEEDPQKLSILNTCKDSAEALHSIIN 263

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADR 684
           D LDLA ++AG ++L      L+  L +   +   +     + +++  D  L   V AD 
Sbjct: 264 DSLDLAKIEAGKIELIPENFDLHHELAKNLNTFRPQAGTKGLDLRLQMDPGLPRLVRADM 323

Query: 685 QRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            RL QI   +LSNA+ F+ +G       +L     +    F V++ G  IP+D+   +F 
Sbjct: 324 HRLGQILRNLLSNAVKFTREGWVELGAEVLIKNEKSCGVNFWVQDTGIGIPKDVLPRLFE 383

Query: 741 RFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI----NCRIP 789
            +         +  G GLGL+I    + L GG +S+ S +   +         +P
Sbjct: 384 AYAQADGSYSKKYGGTGLGLAITRYLVRLMGGSISVHSKEGEGSCFTLNITFELP 438


>gi|254479623|ref|ZP_05092929.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034439|gb|EEB75207.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 468

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 138/298 (46%), Gaps = 18/298 (6%)

Query: 499 LFAAIITSF-DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             + ++ SF  +  K L     +LS   L+Y +             +  +  +   A  +
Sbjct: 181 FLSLLVASFITNPLKRLTEAANILSQGKLDYKV----------DVKSKDEIGKLANAFNK 230

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            + +L K DE +  FV   S+EL++PL ++    + L  S+   + +   + ++ ++   
Sbjct: 231 MSYSLMKIDEERKRFVSDASHELKTPLASVKALIESLINSRSQDI-AFYKEILQDVNGEI 289

Query: 618 TILLNLVNDILDLATVDAGIMK-LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
             +  LVND+L+LA +D   +K      + +++++++V  S+A      N+ +      K
Sbjct: 290 DRMTRLVNDLLELARLD--KIKSPRIKRVEVSEVISDVIDSLAPLAESKNVNLTFNGKEK 347

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           + + V D  R  ++   I+ N + ++ +G  V++    D  +   ++ +NG  I E++  
Sbjct: 348 VFAEV-DPDRFYRMAYNIVENGIKYTYEGGNVLVGLDEDEDNIYLAISDNGIGISEEVLP 406

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F+RF         +  G GLGL+I +  I++H G +++ S     TT    +P ++
Sbjct: 407 KIFDRFARGDTARSKKNGGFGLGLAIAKEIIDMHEGKITVESKVGEGTTFKIVLPKRK 464


>gi|15807408|ref|NP_296140.1| sensory box sensor histidine kinase [Deinococcus radiodurans R1]
 gi|6460235|gb|AAF11962.1|AE002072_4 sensory box sensor histidine kinase [Deinococcus radiodurans R1]
          Length = 744

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 112/685 (16%), Positives = 236/685 (34%), Gaps = 66/685 (9%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
            +G  AF  + +  G++  L             + +   +F+ L   +  +D+  ++  A
Sbjct: 63  AAGGWAFDALPAEGGVWLRLRRAP-AATAAEEQLDLLFTVFERLGTGLVLQDETLNVRRA 121

Query: 219 NISYKKNT---------ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
           N S  +           +       +           E    + +  + +      V  L
Sbjct: 122 NGSAARTLGLSREQLRGQGSVPGNWELRRPGGHRLPPEETPTLRALRSGQDETDMRVGLL 181

Query: 270 EHGNNKSYKIVRVLN--------SFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIA- 320
             G      +               G   +  D + E  V ++L  + +   +L  A A 
Sbjct: 182 RPGAPHWRWLSVGALARRPADPWPPGVLLVLRDETAEQRVREELRRSEQRYRSLVQASAQ 241

Query: 321 -IFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIF 379
            ++  +   +F  R     WE   AF    P       +L++ +    +     W + I 
Sbjct: 242 IVWSASHDGEF--RVSQPQWE---AFTGQPPREHLGGGWLQAVHPDDREATLAAWDQAIE 296

Query: 380 SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG--------TIWMFENLTVQVDLETKYNT 431
                   H+   H  +G  + ++  +   GG         I    ++T+Q   E    T
Sbjct: 297 RNEAYEVRHRLRRH--DGVYVPMLARAVQVGGEAGQTPPEWIGTHSDVTLQDAAERALQT 354

Query: 432 LV------------------KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           L                   +     +    EG+     DG     NPA   L     + 
Sbjct: 355 LNADLQLQVAEQTQEIGQVSRFMALLLTSAGEGIFGLDRDGNNTFVNPAASELLGYSVSE 414

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV-LEYSIIP 532
           L        +    +            +  +      R             V + Y + P
Sbjct: 415 LLGQPSHAKLHHHHADGTPHLLSECPISQTLRDGQQRRVEADVFWHRDGHPVPVAYVVTP 474

Query: 533 LPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
             + +      ++ F +V++ VRA   L +    L+  +     F    S++L+ PL  +
Sbjct: 475 TLDERGEVEGAVVMFQDVSEQVRAHAELEDALHHLQLTNADLEQFAYVASHDLQEPLRTL 534

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
             + +LL     G L+++  QY+ ++  +   + +L+ D+L  + V  G  +L  S + L
Sbjct: 535 GSYAELLARRYQGQLDARADQYIAFMLDAVERMRSLIQDLLAFSRV--GRNELELSEVTL 592

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           + L+ +  +++   +  +   +   + G   + +A    L+Q+ + ++SN + F+  G  
Sbjct: 593 DSLMQQTARNVEAALESSGGALTWDTPG---TALAQPSLLVQLLTNLVSNGLKFARPGVP 649

Query: 708 --VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFI 765
             V + ++    +    V++NG  I  +  + VF  F     R    G G+GL+I    +
Sbjct: 650 PAVEVVSSIVGNEQRIEVRDNGIGIGSEYHERVFTIFQRLHLREDYPGNGIGLAIARKIV 709

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
             HGG +++ S     +T    +P+
Sbjct: 710 AAHGGSLTLKSQPGEGSTFIISLPA 734



 Score = 44.9 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 96/303 (31%), Gaps = 46/303 (15%)

Query: 53  KKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTDTDL 112
           +          E+     +Y SL+  +    IVW    +    + Q        Q   + 
Sbjct: 213 RDETAEQRVREELRRSEQRYRSLVQASAQ--IVWSASHDGEFRVSQPQWEAFTGQPPREH 270

Query: 113 LSFENWLKFHHYIKLSKAT---EKLRKEGQSFDLVAETQN---------DCAIKIEGRV- 159
           L    WL+  H           ++  +  +++++    +            A+++ G   
Sbjct: 271 LG-GGWLQAVHPDDREATLAAWDQAIERNEAYEVRHRLRRHDGVYVPMLARAVQVGGEAG 329

Query: 160 ------SGSCAFLRILSLD--GIYSELAETTLKCKKLSNHISV----FKVLFDSLDFLVW 207
                  G+ + + +       + +  A+  L+  + +  I        +L  S    ++
Sbjct: 330 QTPPEWIGTHSDVTLQDAAERALQTLNADLQLQVAEQTQEIGQVSRFMALLLTSAGEGIF 389

Query: 208 HRDQAGDILWANISYKKNTETE-GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETV 266
             D+ G+  + N +  +        +  +           +    ++S   + +   +  
Sbjct: 390 GLDRDGNNTFVNPAASELLGYSVSELLGQPSHAKLHHHHADGTPHLLSECPISQTLRDGQ 449

Query: 267 STLEHGNNKSYK----------IVRVLNSFGEAGIAI----DVSKEITVNDQLTHTYEIL 312
                 +   ++          +   L+  GE   A+    DVS+++  + +L    + L
Sbjct: 450 QRRVEADVFWHRDGHPVPVAYVVTPTLDERGEVEGAVVMFQDVSEQVRAHAEL---EDAL 506

Query: 313 HNL 315
           H+L
Sbjct: 507 HHL 509


>gi|229079164|ref|ZP_04211713.1| hypothetical protein bcere0023_18240 [Bacillus cereus Rock4-2]
 gi|228704181|gb|EEL56618.1| hypothetical protein bcere0023_18240 [Bacillus cereus Rock4-2]
          Length = 351

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 228

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+ ++           ++++G  I E
Sbjct: 229 -DLEKVYVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    R+P+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|160935994|ref|ZP_02083367.1| hypothetical protein CLOBOL_00890 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440804|gb|EDP18528.1| hypothetical protein CLOBOL_00890 [Clostridium bolteae ATCC
           BAA-613]
          Length = 886

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY-VE 611
           + L    E  + A+  K  F+  +S+++R+P+  IIG T++ K       N  Q QY ++
Sbjct: 355 KRLRRSIEETQNANMAKTKFLSSMSHDIRTPMNAIIGMTEIAKKQIH---NPAQVQYCLD 411

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+ S   LL LVND+LD++ V++G M L+     L +    +   I +++ E  ++  V
Sbjct: 412 KITLSGNHLLTLVNDVLDISQVESGKMALHPVVFSLPECCANLINIIKSQIQEKELQFDV 471

Query: 672 IS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-----DNGDFIFS--V 723
              + K     AD  R+ QIF  +L+NA+ +++ G  +I++        D G+ + +  V
Sbjct: 472 HVRNLKYEYLYADELRMNQIFINLLTNAVKYTNPGGKIIVEFEEALQPGDKGNVVLTYTV 531

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  +  D  + ++  F         +  G GLGL+I +  + L  G ++  S     
Sbjct: 532 QDTGIGMSSDFMRDMYQTFTRAVDSRIDKVHGSGLGLAITKQMVELMNGTINCESEPGKG 591

Query: 782 TTINCRIPS 790
           T     +P 
Sbjct: 592 TRFIVALPL 600


>gi|145300169|ref|YP_001143010.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852941|gb|ABO91262.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1142

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/360 (23%), Positives = 153/360 (42%), Gaps = 33/360 (9%)

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
           +L N  F          +   T  ++  A   R         +   + +  D E++ ++ 
Sbjct: 433 RLINERFDDCL-----HIVAPTPFKDELAVAVRDTYAPLLPLINRVLASMSDKEKQQIRN 487

Query: 517 TL------ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA----------ERALTEKNE 560
           T       E +    L  ++IP+    T+   V      R           E AL    E
Sbjct: 488 TWLAVNYSEGIPWQKLMLTLIPVGTGVTLFILVLSIAYWRLRQEILRRRQVEEALARAKE 547

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +   A   K  F+  +S+E+R+P+ +I+G  + L      SL+ +Q Q V  I+  +  L
Sbjct: 548 SAEHAAGKKAEFLATMSHEIRTPMNSIVGMAEQLS---FTSLDLEQRQMVAIINQGAEGL 604

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS- 679
           L L+ ++LD + +D G M L  S+ +L +L++ V   I++++    ++  +  D ++G+ 
Sbjct: 605 LQLIGNVLDYSKLDVGKMALVPSSFLLRELIDSVLTMISSEVQRKGLQCYLRVDDEVGAR 664

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD-FIFSVKNNGSSIPEDMC 735
           F  D  RL Q+   ++SNA+ F+ +G     + L    D     +  V++ G  +  +  
Sbjct: 665 FTGDVLRLKQVLFNLVSNAIKFTERGFIELSIKLDVQTDGEQRLLIGVQDTGIGMSTEAQ 724

Query: 736 KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI--NCRIPSK 791
             +FN F            G GLGLSI  +   L GG + + S+    T I  +  +P +
Sbjct: 725 ARIFNAFEQADGATTRSYGGTGLGLSISHTLAELMGGELRLESAPGLGTFIGLSVTLPFE 784


>gi|19115322|ref|NP_594410.1| histidine kinase Mak2 [Schizosaccharomyces pombe 972h-]
 gi|74581940|sp|O14002|MAK2_SCHPO RecName: Full=Peroxide stress-activated histidine kinase mak2;
            AltName: Full=His-Asp phosphorelay kinase phk1; AltName:
            Full=Mcs4-associated kinase 2
 gi|2388949|emb|CAB11683.1| histidine kinase Mak2 [Schizosaccharomyces pombe]
          Length = 2310

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 144/374 (38%), Gaps = 25/374 (6%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             +Y  + +     +D L   V     D G I+ +N + R+ +   E+        +    
Sbjct: 1620 QRYKAIEEKCITLLDSLPCIVWTLDSDIGEIEYTNASKRNYFGVPEDC-HDSLSWKTFIH 1678

Query: 486  TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                +  +    +L    +   +   +   G         L +          ++     
Sbjct: 1679 PDHHHQFQEKLLNLKTLELGDIELLLRMEDGNYHWHLCRGLSFKEDANAKKWIVVCIDIN 1738

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             +    E A+   N        +K +F+ ++S+ELR+P ++  G   LL  +K   LN +
Sbjct: 1739 DEKEAREAAMHAVN--------LKTNFLANMSHELRTPFSSFYGMLSLLSDTK---LNEE 1787

Query: 606  QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST-IVLNDLLNEVKQSIATKMHE 664
            Q   V     S T L+ +++D+L+ + + +G MKL       + + + +  + +   +  
Sbjct: 1788 QYDIVSTAKQSCTSLVQIIDDLLNFSELKSGKMKLEPDKVFDVEENIADCIELVYPSLSS 1847

Query: 665  NNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVI--------LKAARD 715
              ++I       + + +  D  +L Q+ + +L N++ F+++G  ++        + A  +
Sbjct: 1848 KPVQISYDIYPNVPALLAGDSAKLRQVITNLLGNSVKFTTEGHILLRCMAIDEEINAEEN 1907

Query: 716  NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
                 F +++ G  + E+  K +FN F        R   G GLGLSI      +  G + 
Sbjct: 1908 QCKLRFEIEDTGIGLKEEQLKLLFNPFTQVDGSTTRIYGGSGLGLSICLQICKIMDGDIG 1967

Query: 774  ISSSDEGVTTINCR 787
            + S     +T    
Sbjct: 1968 VQSVYGEGSTFWFH 1981


>gi|291569373|dbj|BAI91645.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 582

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 148/329 (44%), Gaps = 19/329 (5%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  I    S   N+         I T++ ++  SL    +   D   +++   +   + +
Sbjct: 255 LEPIIIERSAPENDPYQRHSLMVIPTAYQEQPNSLISLHQC--DRTRQWTAAEIDFVREL 312

Query: 540 LTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            T V    +     + L E          +K+ F+ + S+ELR+PL  +IGF  L+    
Sbjct: 313 ATHVGTVIAHATLYQELEEARLEAVALSRLKSEFLANTSHELRTPLNGMIGFLQLVLDG- 371

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +     ++ +++E    ++  LLNL+ND+LD+A ++AG M +  + + ++++L E++  I
Sbjct: 372 MADDPEEEREFIEEAHQAAIHLLNLINDVLDIAKIEAGKMDIELALVKVDEVLREIEHFI 431

Query: 659 ATKMHENNIRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
             ++ + N+++ + ++          + QR+LQ+   ++ N++ F+ KG   + L   R+
Sbjct: 432 RPQVEQKNLKLTIQTEAGNSQIIVYGNYQRILQVMLNLVGNSIKFTHKGGINISLGIIRE 491

Query: 716 N---------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
           N         G   F V + G  +P +    +F  F         Q  G GLGL I +  
Sbjct: 492 NVIIQNQQFPGFVEFRVVDTGIGVPIEKQDRLFQAFSQVDSGYTKQYGGTGLGLVISQKL 551

Query: 765 INLHGGHVSISSSDEG-VTTINCRIPSKE 792
           +   GG V   S  EG  +T+   IP  +
Sbjct: 552 VQAMGGKVKFYSLGEGLGSTVTFTIPLYQ 580


>gi|171320726|ref|ZP_02909738.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
 gi|171094020|gb|EDT39120.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
          Length = 1022

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 10/259 (3%)

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +  F + T   R    L E   A   A+  K+SF+   S+E+R+PL  I+G  +LL+ + 
Sbjct: 472 IAVFADTTAQRRLVHQLEEAVRAADSANAAKSSFLAATSHEIRTPLNVILGNLELLERT- 530

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +L++ Q   V+ + AS+  LL +V+DILD + ++AG M +      +  ++     + 
Sbjct: 531 --ALDASQQSRVQTLRASAEGLLAIVSDILDFSKIEAGAMSVESIEFDVIAVIERELAAF 588

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---- 713
           A       + +    D         D  RL Q+   +L NA+ F+ +G  V   A     
Sbjct: 589 APVARAKGLPLFADIDASAAQRMRGDPTRLAQVVGNLLGNAIKFTGEGRIVARVAVGHDV 648

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGH 771
           R   +    +++ G  I       +F  F         +  G GLGL++ +  +   GG 
Sbjct: 649 RGKPEIAIGIEDTGIGIDPAQQNRLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGT 708

Query: 772 VSISSSDEGVTTINCRIPS 790
           +S+ S+    +    R+P 
Sbjct: 709 ISVHSAPGVGSLFTVRLPL 727


>gi|219848012|ref|YP_002462445.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542271|gb|ACL24009.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 430

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 137/372 (36%), Gaps = 44/372 (11%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             +  +  GV V     +I   N     L   + +    G     +      +  +    
Sbjct: 81  ALVQTIDTGVIVVNRACQIVFHNDTAIHLLAGQPDMRGSG-----LITLVRDHQADRLAH 135

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           D         D E++ L     L +   L    +PL  A   +    +T     +     
Sbjct: 136 DAMT------DGEQRELT-IRPLATGRTLHLQFVPLYTASRDIVGALITIRDLTQ----- 183

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
               +   +  +   V +VS+ELR+PL ++    + L+++    +    ++ +E ++   
Sbjct: 184 ----ISMLERARRDLVANVSHELRTPLASLKLLVETLQSAPPPDI---AARMLEQMAQEI 236

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +  LV+++ +L+ +++G + L    + +  ++    + I  +    +  I       L
Sbjct: 237 DAVTQLVDELHELSRLESGRVSLKLEPLAVWPVIERAIERIRPQAERKHHTICTEPVSDL 296

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------DNGDF 719
              + D  R+ Q+   +L NA+ F+ +G T+ + A                         
Sbjct: 297 PPALMDGDRIGQVLLNLLHNAVKFTPEGGTITVAAQVLHIAVDDPPSRTDRPPHPAGTWI 356

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
           + SV++ G  I     + +F RF        R   G GLGL+I +  +  HGG +  SS 
Sbjct: 357 LISVRDTGIGISSRDIRRIFERFYKVDRARTRHTGGTGLGLAIAKHLVEGHGGRIWASSQ 416

Query: 778 DEGVTTINCRIP 789
           +   +T    +P
Sbjct: 417 EGRGSTFWFTLP 428



 Score = 37.6 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           ++  +   + + ++   + FHN + + L       LA  P        +R +  +    +
Sbjct: 82  LVQTIDTGVIVVNRACQIVFHNDTAIHL-------LAGQPD-------MRGSGLITLVRD 127

Query: 371 WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVDL 425
            +  +    ++    +       L  G+TLH+             G +    +LT    L
Sbjct: 128 HQADRLAHDAMTDGEQRELTIRPLATGRTLHLQFVPLYTASRDIVGALITIRDLTQISML 187

Query: 426 ETKYNTLV 433
           E     LV
Sbjct: 188 ERARRDLV 195


>gi|303313435|ref|XP_003066729.1| Histidine Kinase A (phosphoacceptor) domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106391|gb|EER24584.1| Histidine Kinase A (phosphoacceptor) domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 762

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 101/517 (19%), Positives = 205/517 (39%), Gaps = 44/517 (8%)

Query: 295 VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
              + ++ND   +  ++     +   I D +  +   + S +EL+++ L           
Sbjct: 116 AEAKPSLNDSNRNLCKVFALTPIPTIILDSDLRIIDISNSHLELFKLGLHECLGR----R 171

Query: 355 LLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRG 410
           + +   S   +P+     +      S  ++ +   D     +     +  T     N   
Sbjct: 172 IFDMEPSKIPVPDVAILDSVINTAIST-QNVQVMHDVEDYLSQSVFRMRATPIFEANRLL 230

Query: 411 GTIWMFENLTV-QVDLETKYNT-LVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLW 467
             +    N+T   +  +   N    +     +D +S+  + +    G I   N     L 
Sbjct: 231 YVVLEALNITDPYLKSKIHENAYASETYRVLVDTVSDYAIFMLDTKGYITTWNAGAAILK 290

Query: 468 KTE-ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-- 524
               E  L     +      C++     +       ++ S  D +   +G       S  
Sbjct: 291 GYTAEEVLGKHFSMFYGEDDCAQGKPRKE-------LVLSLHDGKVEDEGWRYRKDGSRF 343

Query: 525 VLEYSIIPLP----NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
               +I P+     +   +    ++T+   AE  L    E   +  ++K+ F+ ++S+E+
Sbjct: 344 WANVTITPVHQFGHHVGFVKVVRDLTERKAAETRLIAAYE---ETSKLKSDFLANMSHEI 400

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+P+  ++G   LL ++   +L+  Q +Y   I  S+++LL L+NDILD + + +G   L
Sbjct: 401 RTPMNGVLGALSLLNST---ALSQNQREYATIIEESTSVLLRLINDILDYSKLSSGSFSL 457

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAM 699
                 +  ++N V Q+   +  E  I +K I D    S V  D  R  QI   ++ NA+
Sbjct: 458 TTDVFSVESIVNSVIQNCPPRNPE--IEVKSIIDPGFPSHVKGDPLRFRQILQNLVGNAV 515

Query: 700 DFSSKGSTVILKA-----ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
            F+ KG  + ++       RD+      V ++G  + ++   ++F  F  +A+   +R  
Sbjct: 516 KFTDKG-YIHVRTCFKEDERDDYSVTVEVIDSGIGVADEAMNTLFAPFTRSANSATKRYQ 574

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDE-GVTTINCRI 788
           G GLGLSI +S   L GG V   ++ +   +    +I
Sbjct: 575 GTGLGLSICKSLAELMGGAVGYRTNPDCQGSIFWLKI 611


>gi|254254025|ref|ZP_04947342.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124898670|gb|EAY70513.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 477

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 129/278 (46%), Gaps = 18/278 (6%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERAL------------TEKNEALRKADEIKNSFVQH 575
           ++  P+ +AQ     +++T     ER L             +      +++ +K+  +  
Sbjct: 54  FAASPIVDAQGRSAGLSMTLREARERRLGERRDLRSLRGARDARVQADESNRMKDELLAT 113

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PL  I G+ ++L++     L     Q V+ I  S+  L  +V D+LD +++  
Sbjct: 114 VSHELRTPLNVIYGWVEVLRSVDGQGL---AQQAVDAIDRSARSLSRMVGDLLDASSLAT 170

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
           G ++L    + L  ++ E  + +A     N I +            AD +RL Q+ S +L
Sbjct: 171 GRLQLERVPVDLVRIVRETARELAATAQANGIVLATDCAMPTCVIPADGERLRQVLSNLL 230

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRG 753
           SNA+ ++  G  V +   R       SV + G  I  +    +F+ F     A    +RG
Sbjct: 231 SNAIKYTPPGGRVDVSLTRAGEHVRLSVADTGQGIAPEHLPHLFDTFNRPHGAPTSPKRG 290

Query: 754 VGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
           +GLGLSIV +  +LHGG VS +S      TT+   +P+
Sbjct: 291 LGLGLSIVRNIAHLHGGDVSATSDGAGRSTTVTVTLPA 328


>gi|172057054|ref|YP_001813514.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989575|gb|ACB60497.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 575

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 146/386 (37%), Gaps = 42/386 (10%)

Query: 410 GGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           G     F  ++ Q+    T  +    +    +  +++GV  F   G +  +NP   +   
Sbjct: 224 GDLALAFNEMSSQLNQYVTDLDKERHLLSSILRCMADGVLTFSESGELLATNPPAEAFLA 283

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                       + +           +    F  II S   E++   G + +L D     
Sbjct: 284 GGPVPDELIELFQTVMRKEKEMTVSFEREGRFYIIIVSPLLEQEEQIGAVAVLRD----- 338

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                                             ++ ++++  FV +VS+ELR+PL  + 
Sbjct: 339 ------------------------------MTEAQQLEKMRADFVANVSHELRTPLVMLQ 368

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+++ +      S +    ++   I   S  L  LVND+LDLA ++AG  +     I   
Sbjct: 369 GYSEAIVDGMTES-DEATKEFASIIYDESQRLSRLVNDLLDLARMEAGYQEKRIELIDAV 427

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
                + +       E  +  +V   G    F AD  ++ Q+ + +L NA+ ++  G  +
Sbjct: 428 PFAKRMVKKFKQMGLEKRVSFEVT--GPDVQFEADPDQMDQVMTNLLGNALRYTEDG-KI 484

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN 766
            ++   D      SV ++G  IPE+    VF+RF        R   G G+GL+IV + + 
Sbjct: 485 KIEITEDRETISLSVIDSGDGIPEEDVPFVFDRFYKADKARTRGKTGTGIGLAIVANVVR 544

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            H G V + S     +    ++P K+
Sbjct: 545 SHDGEVQVESELGKGSVFRIQLPKKQ 570


>gi|256421717|ref|YP_003122370.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256036625|gb|ACU60169.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1013

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 166/445 (37%), Gaps = 34/445 (7%)

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
           E + +V ++    +  + L       V    N   G + +   +T QV  E +      +
Sbjct: 116 EQLLAVNRTGFNEETYFSLSYSA---VENDENKISGMLCVCSEITHQVVAERRLRIQRDL 172

Query: 436 QGET-----IDHLSEGVAVFGPDGRIKL-SNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                    I+ + E +     +    L     +    +    R   G      A+   +
Sbjct: 173 SAAASNANSIEQVFEDIMAVAGNYTTDLPFTILYMLENEQWVCRGMTGVPADEYASAPWQ 232

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT--- 546
                 G  +    +  F   R  L   L   S ++   S IP      ++  VN     
Sbjct: 233 MEKAMHGQTIITDNVAQFMTVRGGLWNELVQKSVTIPIPSAIPSRPLGMLVAGVNPNAVL 292

Query: 547 -------------------DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
                               +  A     ++   L + D  K +F  ++S+E R+PLT I
Sbjct: 293 DENYLSFYALLSGQISVAVRNAFAYDEERKRTAYLAEIDRAKTAFFNNISHEFRTPLTLI 352

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G    +   +  S +      V    +++  LL LVN +LD + ++A  M+ +Y+ + L
Sbjct: 353 LGPLHDILIHQANSSSKHTIDQVSIAYSNAVRLLKLVNTLLDFSRIEAHRMQASYTPVDL 412

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST 707
           +    E+  S  + + + N+   +           D Q   +I   ILSNA+ F+  G  
Sbjct: 413 SQFTTELASSFESAIKKENLFFHIDCTQLSDVIYVDTQMWEKIVFNILSNALKFTFTGG- 471

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFI 765
           + +       + +  + + G  IP +    +F+RF  V+++      G G+GL++ +  +
Sbjct: 472 ISVSLQETAENAVLIISDTGVGIPAEELPHIFDRFHRVTSSRSRTHEGTGIGLALTKELV 531

Query: 766 NLHGGHVSISSSDEGVTTINCRIPS 790
            +HGG ++  S  +  TT   RIP 
Sbjct: 532 TIHGGDITAVSQPDVGTTFTIRIPK 556



 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 167/463 (36%), Gaps = 78/463 (16%)

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETK--YNTLVKVQGETIDHLSE-GVAVFGPD 453
           G T  + +   P+G      +++   +D E           +  +   + +  +     D
Sbjct: 547 GTTFTIRI---PKGTAHLDAKSIREFIDKEGTDFLQESYTNEISSWQRMDDKAITTTDAD 603

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR------------------YYNESD 495
           G + L       +    +  LS   H + I A+  R                     + +
Sbjct: 604 GDLILVVDDNSQMANYIQKMLS--RHWKVITASNGREALSLIYQEAPALVVSDVMMPDMN 661

Query: 496 GWDLFAAIITSFD---------DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           G++L  AI +  +           R   + T+E L     +Y I P    + +       
Sbjct: 662 GFELLNAIKSDVEISNIPVILLSARAGKEATIEGLEKGANDYIIKPFYADELIARVSTQL 721

Query: 547 DSVRAERALTEKNEA---------------------LRKADEIKNSFVQHVSYELRSPLT 585
              +AE A T   E                      L K +     F    S++L+ PL 
Sbjct: 722 QLRKAELANTHLRERAESQRLFQKELERMVRDRTADLTKINAELEQFAFAASHDLQEPLR 781

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+ ++ +L    + S   K  +Y+E I  SS  + NL+ND+L+ + +   I ++ +++ 
Sbjct: 782 KILLYSQMLANE-ISSDQQKAGRYLEKIMTSSARMRNLINDLLNFSRL--SIKEVAFTST 838

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            LN +L  +   +  +++ +  +I       L    A   ++ Q+F  +LSNA+ FS   
Sbjct: 839 DLNTILENLLVDLELQINRSQAKITYT---DLPVIEAVPLQMQQLFFNLLSNALKFSDTR 895

Query: 706 ST--VILKAA--------------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
            T  + ++A+                       + +NG    +     +F  F    HR 
Sbjct: 896 RTPAITVQASIATSADVALLSVPDPSAEYVKIVITDNGIGFDQKYADQIFTMFQKLHHRT 955

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              G G+GL++ +  +  H G +   S +   +     +PS++
Sbjct: 956 AYAGTGIGLALCKKVVINHHGIIHAMSVEGEGSKFTIILPSRQ 998


>gi|312875871|ref|ZP_07735861.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797352|gb|EFR13691.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 467

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 11/259 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN        +  +      +     E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPN-------NSDDEISELISSFNYMTEKLENLEMMRKSFISNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    ADR  + ++   +L NA+ ++  G  + +
Sbjct: 327 IAEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF           GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGVTTINCRI 788
            ++ + S +   +     +
Sbjct: 446 QNIWVESEEGVGSKFTFTL 464


>gi|302380746|ref|ZP_07269211.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Finegoldia magna ACS-171-V-Col3]
 gi|302311689|gb|EFK93705.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Finegoldia magna ACS-171-V-Col3]
          Length = 468

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 113/256 (44%), Gaps = 4/256 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +      N  +  R    L    + + K +++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 208 NMEVRAKENNTDEIGRLGMTLNLLTDNINKKEQLKNEFISSVSHELRTPLTSIKGWAQTL 267

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K        +     ++ I +    L  +V ++LD +   +G + +      L +L   +
Sbjct: 268 KYDPSDLETTTMG--IDIIDSECDRLTTMVEELLDFSRFTSGRISIVKRKQNLIELAEHI 325

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           K  +  K+    I + +  +        D  R+ Q+F  IL NA+ F+    T+I+   +
Sbjct: 326 KNQLLPKVRSKGIDLILNYESPELIATFDEDRIKQVFINILDNAIKFTPDKGTIIINIEK 385

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                  S+ + G  I  +  + V  +F   ++      VGLGLSI E  + LH G + I
Sbjct: 386 TEKFAEVSIIDTGIGISFEEIELVTGKFYKGSNSNSH--VGLGLSICEEIVKLHKGELMI 443

Query: 775 SSSDEGVTTINCRIPS 790
            S  +  TT++  +P 
Sbjct: 444 KSKIDEGTTVSFTLPL 459


>gi|301061334|ref|ZP_07202116.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444653|gb|EFK08636.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 633

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 169/381 (44%), Gaps = 25/381 (6%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
            +   +     ++    ID++   + +F PDG +++ N  +R+L   +      G  I +
Sbjct: 266 RERTAELTRAKELLQTIIDNIPVMICLFNPDGNVRILNSHYRNLIGLD------GRKIGD 319

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE--YSIIPLPNAQTML 540
                +R  + +   ++++ +      +R     T++      L+  ++ + L +   + 
Sbjct: 320 TDLAETRQIDPTICREVWSQMKQG---QRGWKDFTIQTTYGKNLQTSWARVRLSDGSVIG 376

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +++++  R+E       E L+++++    F    S++L+ PL  I  F +LL T    
Sbjct: 377 IGIDISERKRSEEQKEHYLEQLKRSNKELQDFAFVASHDLQEPLRKIQSFGELLVTEVHD 436

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           S++++   ++  +  ++T +  L++ +L  + V        +S + L + + E   ++A 
Sbjct: 437 SISAEGRDFLVRMQNAATRMRKLIDSLLAYSRVTTKTRA--FSQVNLVEAVEEALGNLAV 494

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-------- 712
              E    ++V   G+L +   D+ +++Q+F  ++ NA+ F  KG +  +K         
Sbjct: 495 LKEEKKASVEV---GELPTVEGDQVQMIQLFQNLIGNALKFHRKGVSPEIKIYALTIHGG 551

Query: 713 ARDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
             D  D     VK+NG    E     +F  F     + +  GVG+GL+I    +  HGGH
Sbjct: 552 RSDQADVYEIFVKDNGIGFDESYLSRIFTPFQRLHGKSEYEGVGIGLAICRKIVERHGGH 611

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           ++ +S+  G       +P K+
Sbjct: 612 ITATSNPGGGAVFIVTLPKKQ 632



 Score = 49.9 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
           F R L       E+     +  +L+    + + + D++  ++   +  G++   N  Y+ 
Sbjct: 250 FFRELKQSEAQLEI-RVRERTAELTRAKELLQTIIDNIPVMICLFNPDGNVRILNSHYRN 308

Query: 225 NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFC--ETVSTLEHGNNKSYKIVRV 282
               +G           +     I + + S     +      T+ T    N ++      
Sbjct: 309 LIGLDGRKIGDTDLAETRQIDPTICREVWSQMKQGQRGWKDFTIQTTYGKNLQTSWARVR 368

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
           L+     GI ID+S+     +Q  H  E L  
Sbjct: 369 LSDGSVIGIGIDISERKRSEEQKEHYLEQLKR 400



 Score = 47.2 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 10/186 (5%)

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRY 327
           +E G  K Y +        EA + I V +    +         I+ N+ V I +F+ +  
Sbjct: 239 IETGLRKPYALFFRELKQSEAQLEIRVRERTAELTRAKELLQTIIDNIPVMICLFNPDGN 298

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
           ++  N  +  L  +D   +            L    ++   +  + W +         + 
Sbjct: 299 VRILNSHYRNLIGLDGRKIGDT--------DLAETRQIDPTICREVWSQMKQGQRGWKDF 350

Query: 388 HKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV 447
              T +  N QT    V     G  I +  +++ +   E +    ++    +   L +  
Sbjct: 351 TIQTTYGKNLQTSWARVR-LSDGSVIGIGIDISERKRSEEQKEHYLEQLKRSNKELQDFA 409

Query: 448 AVFGPD 453
            V   D
Sbjct: 410 FVASHD 415


>gi|298491856|ref|YP_003722033.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
 gi|298233774|gb|ADI64910.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
          Length = 684

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 23/297 (7%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI----- 568
           L   LE L D  L  +I     AQ +     + +  +  +AL +  E L+   E      
Sbjct: 318 LASPLEELRDYAL--NIHSHHAAQPIPRNFKIREFNQLAQALDQMVERLKAWAEELEIAW 375

Query: 569 ---------KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                    K+ F+   S+ELR+PL  II    L++   L     ++ ++++    ++  
Sbjct: 376 KEAKSANFVKSQFLATTSHELRNPLNIIINCVRLVRDG-LCDDREEELEFLQRADETAIH 434

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           LL ++ND+LD++ ++AG + +  + + L  LL +V    +  + +  +++K     +L  
Sbjct: 435 LLGIINDLLDISKIEAGKISVITTPLELRKLLLDVINLQSVNVQQKGLQLKCAIGNELIP 494

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG---DFIFSVKNNGSSIPEDMCK 736
             AD  +L Q+   I+ N+  F+ KGS VI      N      I SVK+ G  I      
Sbjct: 495 VRADELKLKQVLINIIGNSTKFTDKGSIVISTDIHHNNSSSHVIISVKDTGIGIDPGQQD 554

Query: 737 SVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPS 790
            +F  F  V      +  G GLGL+I  + I L GG +++ S      TT+   +P 
Sbjct: 555 KLFRPFVMVDGTTTRKFEGTGLGLAISRNLIELMGGKITLESLGLHHGTTVKIILPL 611


>gi|228952361|ref|ZP_04114449.1| hypothetical protein bthur0006_17670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229043750|ref|ZP_04191452.1| hypothetical protein bcere0027_17960 [Bacillus cereus AH676]
 gi|229109449|ref|ZP_04239043.1| hypothetical protein bcere0018_17160 [Bacillus cereus Rock1-15]
 gi|228674016|gb|EEL29266.1| hypothetical protein bcere0018_17160 [Bacillus cereus Rock1-15]
 gi|228725603|gb|EEL76858.1| hypothetical protein bcere0027_17960 [Bacillus cereus AH676]
 gi|228807357|gb|EEM53888.1| hypothetical protein bthur0006_17670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 351

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 228

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+ ++           ++++G  I E
Sbjct: 229 -DLEKVYVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    R+P+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|169824303|ref|YP_001691914.1| two-component sensor histidine kinase [Finegoldia magna ATCC 29328]
 gi|167831108|dbj|BAG08024.1| two-component sensor histidine kinase [Finegoldia magna ATCC 29328]
          Length = 468

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 113/256 (44%), Gaps = 4/256 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +      N  +  R    L    + + K +++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 208 NMEVRAKENNTDEIGRLGMTLNLLTDNINKKEQLKNEFISSVSHELRTPLTSIKGWAQTL 267

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K        +     ++ I +    L  +V ++LD +   +G + +      L +L   +
Sbjct: 268 KYDPSDLETTTMG--IDIIDSECDRLTTMVEELLDFSRFTSGRISIVKRKQNLIELAEHI 325

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           K  +  K+    I + +  +        D  R+ Q+F  IL NA+ F+    T+I+   +
Sbjct: 326 KNQLLPKVRSKGIDLILNYESPELIATFDEDRIKQVFINILDNAIKFTPDKGTIIINIEK 385

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                  S+ + G  I  +  + V  +F   ++      VGLGLSI E  + LH G + I
Sbjct: 386 TEKFAEVSIIDTGIGISFEEIELVTGKFYKGSNSNSH--VGLGLSICEEIVKLHKGELMI 443

Query: 775 SSSDEGVTTINCRIPS 790
            S  +  TT++  +P 
Sbjct: 444 KSKIDEGTTVSFTLPL 459


>gi|296120700|ref|YP_003628478.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296013040|gb|ADG66279.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 568

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/576 (16%), Positives = 211/576 (36%), Gaps = 48/576 (8%)

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSS-ALEKNFCETVSTLEHGNNKSYKIVRV 282
             +    I  ++    + KL ++       S+    + +     ST +    +++ +   
Sbjct: 14  ALSAEFDIPSEEGTDRNAKLCQQLSGIDPHSTREGSKSDKAARTSTSQGSTTRAHDLEPQ 73

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID 342
            +S            +          Y +L  L + +A+F Q   L       + L+   
Sbjct: 74  SSSSPSP-------GKPPQRRIFQAHYSVLLPLIIPVAVFGQTAVLLC-----ILLFGTP 121

Query: 343 LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV 402
           ++ L        +  F      +   +  +   +    + +     + T  L   + +  
Sbjct: 122 ISSL-------IVFLFCLGGVLISAMIAARYEADAARRLGQPENRTQLTADLVLFRNIIS 174

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYN---TLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
                 +       E +  +  +E ++      V+     +D + + V V   +G     
Sbjct: 175 EANHLLQQAEKRTAEAVHARATVEARFKVQKRHVRRLEMALDDMEQPVVVTDVNGHALYQ 234

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N + RSL+K              I+   +R   E  G      +I   +  +  LQ TL 
Sbjct: 235 NESARSLYK-------------QISQKLAREIQEQTG------LIDILEGMKPLLQETLT 275

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN---SFVQHV 576
               S    + IP       +    + ++           + + +  + ++    FV  V
Sbjct: 276 RRVASDRRTADIPCLTTTYRIHAHTLKENENTLLGAALVLQDIGREVQDRSRHAEFVSSV 335

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            +E ++P+++I  + +LL+  ++     +Q + + +I      L  LV+++L+LA +++G
Sbjct: 336 CHEFKTPMSSIKAYAELLRDGEIDEA-EEQQKILVFIDEQVDRLSRLVDNMLNLARIESG 394

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
           ++++    + +N LL      +  +    +  ++ +          D     Q    +LS
Sbjct: 395 VIRVQRKDVEINRLLKSALDVVTPQAAAKSQTVESLLSDLYIPAHVDEDLFSQAVVNLLS 454

Query: 697 NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVG 755
           NA+ ++  G  + LK+  +    +  V++ G  IP      +F RF       +   G G
Sbjct: 455 NAVKYTPAGGKISLKSRLEEDRVLIEVRDTGMGIPAASLPRLFERFYRVPENMKAAAGTG 514

Query: 756 LGLSIVESFI-NLHGGHVSISSSDEGVTTINCRIPS 790
           LGL++V+  I ++H G +S+SS     +     IP+
Sbjct: 515 LGLALVKYIISSIHDGSISVSSKQGEGSCFTISIPA 550


>gi|239628829|ref|ZP_04671860.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518975|gb|EEQ58841.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 468

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 5/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   ++ L K +E + +F+ +VS++ RSPLT+I G+ + +    +        +Y+  + 
Sbjct: 230 LNYMSDELNKMEEYQKNFIANVSHDFRSPLTSIKGYLEAILDGTIP--EDMYEKYLSRVI 287

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + +  L  L   +L L ++DA    L+ +   +N ++ +   S        NI   +   
Sbjct: 288 SETKRLHKLTESMLTLNSLDAKGY-LSRTNFDINRVIKDTAASFEGTCDAKNISFDLTFS 346

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +    AD  ++ Q+   ++ NA+ FS   ST+ ++A+        SVK+ G  IP+D 
Sbjct: 347 DSIQMVYADLGKIQQVLYNLIDNAIKFSHHNSTIYIQASGRYEKIFVSVKDTGIGIPKDS 406

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            K ++ RF          ++G GLGLSIV+  +  HG ++ + S++   T     +P
Sbjct: 407 QKKIWERFYKTDLSRGKDKKGTGLGLSIVKEIVQSHGENIDVVSTEGVGTEFIFSLP 463


>gi|224368990|ref|YP_002603154.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
 gi|223691707|gb|ACN14990.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
          Length = 701

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 13/250 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D  R  R L+   E L+++   K  F+  +S+E+R+PL++I+G+TD+L  + L     +Q
Sbjct: 158 DLGRTNRELSVAMEGLKESSRAKGDFLARMSHEIRTPLSSIMGYTDILFDTCLA---PEQ 214

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + YV  I  S  +LL +VND+LD + V++G + L+        L  E  + + T++  + 
Sbjct: 215 TDYVTNIKKSCDVLLGIVNDVLDFSRVESGEIGLDPIEFDPEVLCFECLEMVRTQVDTSR 274

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---FIF- 721
           + +   I D   G   AD  R  Q+   +L NA  F+  G  + L            +  
Sbjct: 275 VELLCRICDCVPGCVRADPNRFRQVLLNLLGNAAKFTVNG-VIELSLKVKEKTKTGIVLC 333

Query: 722 -SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV---GLGLSIVESFINLHGGHVSISSS 777
            SV++ GS IP      +F  F         +G+   GLGLSI        GG++++ S 
Sbjct: 334 ASVRDTGSGIPTAALGVIFKPFQQVVRGRIAKGLRGMGLGLSICRKIARRMGGNITVESR 393

Query: 778 DEGVTTINCR 787
           +   +     
Sbjct: 394 EGEGSVFTFS 403


>gi|315169595|gb|EFU13612.1| PAS domain S-box [Enterococcus faecalis TX1342]
          Length = 591

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L            +Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PEVLNQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +      ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 449 ILGPYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|144897547|emb|CAM74411.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 530

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 157/407 (38%), Gaps = 41/407 (10%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  L         +    +D++ + +            NPA  ++   +    + G  +
Sbjct: 122 DRWRLGRTLERERTLLQALMDNVPDAIFFKDDSLHFTRINPAQATMLGLDSPLEAMGHML 181

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            ++    S    E    D+    +   D     +    +  + +    + +P+     ++
Sbjct: 182 GDLVPPASAQLAEEQERDILDRGVPIIDKVEAVVD---DKGATTWYSITKVPIRLGGDVV 238

Query: 541 ----TFVNVTDSVRAERALTEKNEALRK-------------------------------- 564
                  +VT   +AE  L   ++ L++                                
Sbjct: 239 GLAGIARDVTKRKQAEDLLRRSHDDLQRAVDERTAWLRQEISRRAQAEEQARAARDVAEA 298

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           +   K++F+ ++S+ELR+PL  IIGF +L ++    +   +   ++  I  S+  LL ++
Sbjct: 299 SSRAKSTFLANMSHELRTPLNAIIGFAELAESQMGEAEKQRLGSFICDIGESAHHLLRVI 358

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +DILD+A V+AG + L+ S I + +++    +  A  +      +       L     D 
Sbjct: 359 SDILDVARVEAGKINLHESLIFIPEVIQSAVRLTAPSVTAKQQTVLTSCPDDLPRLKGDE 418

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           + + Q+   +++NA  F+     + ++A   +G    S+ +NG  I  D    V   F  
Sbjct: 419 RLIKQVLLNLVANASKFTQNNGQITIRAELVDGCVRLSIADNGCGIAPDDIAKVLQPFGQ 478

Query: 745 NAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +    ++ G GLGL +   F+ LHGG + + S     TT+    P
Sbjct: 479 VENLLAPKQEGTGLGLPLAREFMELHGGSLDVQSQLNQGTTVILTFP 525



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 10/156 (6%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           L L  +    A+     + L    ++ + L D++   ++ +D +      N +       
Sbjct: 111 LELKVVVRTAADRWRLGRTLERERTLLQALMDNVPDAIFFKDDSLHFTRINPAQATMLGL 170

Query: 229 EGIVFQ--KAIGESRKLFKEEIKKRMISS-SALEKNFCETVSTLEH--GNNKSYKIVRVL 283
           +  +      +G+       ++ +              + V  +    G    Y I +V 
Sbjct: 171 DSPLEAMGHMLGDLVPPASAQLAEEQERDILDRGVPIIDKVEAVVDDKGATTWYSITKVP 230

Query: 284 NSFGE-----AGIAIDVSKEITVNDQLTHTYEILHN 314
              G      AGIA DV+K     D L  +++ L  
Sbjct: 231 IRLGGDVVGLAGIARDVTKRKQAEDLLRRSHDDLQR 266


>gi|257060785|ref|YP_003138673.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8802]
 gi|256590951|gb|ACV01838.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8802]
          Length = 680

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 161/403 (39%), Gaps = 25/403 (6%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLS----EGVAVFGPDGRIKLSNPAFR 464
           G  I+ F  +  +++  E +    +  +   ++ L     +G  +   + ++ L NP  R
Sbjct: 247 GELIFSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIVDGAILLDNNLQLLLVNPRAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT-----SFDDERKSLQGTLE 519
            ++  E   +     +  +    S   +E          +      +  D         +
Sbjct: 307 RMFGWEGREVIGVNVLELLPTELSFELSEPLQEMARKGALEDKGGQNPSDPISEPSEGQQ 366

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA----ERALTEKNEALRKADEIKNSFVQH 575
             S      ++         +    V D  RA         +      + +  K+ F+ +
Sbjct: 367 GSSTGEFRITLTQPTQRIVRILLTQVFDQQRATVKGIAMTVQDITREVELNAAKSQFISN 426

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PL NI  F + L          ++ +++E  +  +  L  LVND+LDL+ +++
Sbjct: 427 VSHELRTPLFNIKSFIETLSEFGEDLTEEERKEFLETANHETDRLTRLVNDVLDLSRLES 486

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             +  +   + L+ ++ ++ ++      +  + +    +G L   +     LLQ+ + ++
Sbjct: 487 SKI-YHLDRVDLSQVIEQILRTHQLNAKDKELELSYQPEGNLSPVLGHYDLLLQVMTNLV 545

Query: 696 SNAMDFSSKGSTVILKAARDNGD---------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            N++ F+  G  ++L+A    GD             + + G  I  +  +++F+RF    
Sbjct: 546 GNSLKFTEPGGKIVLRAYHVRGDSSNPIHQDKIRVEISDTGIGIDPEDQEAIFSRFFRVE 605

Query: 747 HRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +R     G GLGLSIV++ IN H  H+ + S     TT    +
Sbjct: 606 NRVHTLEGTGLGLSIVKNIINKHHSHIYLVSEVGVGTTFWFDL 648


>gi|228477483|ref|ZP_04062119.1| sensor protein YycG [Streptococcus salivarius SK126]
 gi|228250918|gb|EEK10106.1| sensor protein YycG [Streptococcus salivarius SK126]
          Length = 446

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 135/382 (35%), Gaps = 30/382 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L               + ++S+GV      G+I + N   + L    +   
Sbjct: 74  LNDLSDVFRLTHENLAQEKNRLSSVLSYMSDGVIATNRRGQITMINSTAQRLLNL-DYET 132

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +    I ++    + Y       +L +         R +    + L     + +++I   
Sbjct: 133 ATQMSILDLLDGENPY----TYSELLSKTPEIHLSRRDANDEFVTLR----VNFALIRKE 184

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 185 SGFISGLVAVLHDATEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 233

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +++D+L L+ +D    +L+         +  +
Sbjct: 234 DDGALD--EEIAPNFIKVSLDETNRMMRMISDLLALSRIDNKSTQLDVEMTNFTAFMTYI 291

Query: 655 KQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                    +         I             D  ++ Q+   IL+NA+ +S  G  + 
Sbjct: 292 LNRFDQIKSQETNTGKTYEIIRDYPVNSIWVEIDTDKMTQVVDNILNNAIKYSPDGGKIT 351

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +     +   I S+ + G  IP+     +F+RF          + G GLGLSI +  I  
Sbjct: 352 VSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIIKQ 411

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G +   S     +T    +P
Sbjct: 412 HKGFIWAKSEYGKGSTFTIVLP 433


>gi|163797319|ref|ZP_02191272.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159177410|gb|EDP61966.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 537

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 150/352 (42%), Gaps = 16/352 (4%)

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR-----NIAATCSRYYNESDGWDLFAA 502
            +F   GR  L+ P  +      E        +       I+A  +   +    ++   A
Sbjct: 180 VIFDRLGRSILARPLTQLTRAVREAGWGRLHPVEFDAPTAISAAGTEIEHLRIAYNDLVA 239

Query: 503 IITSFDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            ++    E  +L   LE  ++    E         +T+     +    +A R      +A
Sbjct: 240 ALSRGQREIATLNRDLETRVAARTSELQ------ERTVELSAALARVDQARRQTAAALDA 293

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL-GSLNSKQSQYVEYISASSTIL 620
             +A   K+ F+  VS+ELR+PL +I+GF++L++   + G+   + S+Y   I AS + L
Sbjct: 294 AERAGRAKSEFLALVSHELRTPLNSILGFSELVRDQAVRGADPERMSEYAADIHASGSHL 353

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           L L+NDILDL+ ++AG M+++   +    +   V + +  +    N+ I+   D  +G  
Sbjct: 354 LTLINDILDLSKIEAGQMEIHSEWVDPAAITRAVVELMREQATRKNLTIECRLDPSIGPL 413

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVF 739
            AD +R  Q+   +LSNA+ F+    TV ++      G    +V + G  +         
Sbjct: 414 RADPRRFRQMLMNLLSNAVKFTDPPGTVTIEGRVTPEGGLTIAVVDTGIGMRSQDVARAL 473

Query: 740 NRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F          ++G GLGL +V     LHGG +S+ SS    T      P
Sbjct: 474 EPFGQIDSPITRSQQGTGLGLPLVSQMARLHGGRLSMDSSPGVGTRATLWFP 525


>gi|291561249|emb|CBL40048.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 468

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 7/236 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + +++E + K+ +++  F  +VS+EL++PLT I G+ +L++    G    +   +   I 
Sbjct: 209 IRQQHEDILKSSQVRQEFTANVSHELKTPLTAISGYAELIEHGMSGENTER---FASEIH 265

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            ++  LL L+NDI+ L+ +D G   + Y  + L  L  E    +     + N+ I+V   
Sbjct: 266 KNAARLLTLINDIIQLSQLDGGKKDVEYRDLDLFPLARECVDMLQMNAQKQNVTIRVQ-- 323

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G      AD+Q + ++   +  NA+ ++ K  TV +    +NG    SVK+ G  I  + 
Sbjct: 324 GGEAPVFADKQLMEELIYNLCDNAIRYNKKDGTVTVTTGIENGHTFLSVKDTGIGISAEH 383

Query: 735 CKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + VF RF            G GLGL+IV+  +  HG  +++ S     T I    
Sbjct: 384 QERVFERFYRVDKSRSKATGGTGLGLAIVKHIVAQHGAKLTLESEQGKGTEIRVEF 439


>gi|284052778|ref|ZP_06382988.1| GAF sensor signal transduction histidine kinase [Arthrospira
           platensis str. Paraca]
          Length = 582

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 148/329 (44%), Gaps = 19/329 (5%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  I    S   N+         I T++ ++  SL    +   D   +++   +   + +
Sbjct: 255 LEPIIIERSAPENDPYQRHSLMVIPTAYQEQPNSLISLHQC--DRTRQWTAAEIDFVREL 312

Query: 540 LTFVNVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            T V    +     + L E          +K+ F+ + S+ELR+PL  +IGF  L+    
Sbjct: 313 ATHVGTVIAHATLYQELEEARLEAVALSRLKSEFLANTSHELRTPLNGMIGFLQLVLDG- 371

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
           +     ++ +++E    ++  LLNL+ND+LD+A ++AG M +  + + ++++L E++  I
Sbjct: 372 MADDPEEEREFIEEAHQAAIHLLNLINDVLDIAKIEAGKMDIELALVKVDEVLREIEHFI 431

Query: 659 ATKMHENNIRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
             ++ + N+++ + ++          + QR+LQ+   ++ N++ F+ KG   + L   R+
Sbjct: 432 RPQVEQKNLKLTIQTEAGNSQIIVYGNYQRILQVMLNLVGNSIKFTHKGGINISLGIIRE 491

Query: 716 N---------GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESF 764
           N         G   F V + G  +P +    +F  F         Q  G GLGL I +  
Sbjct: 492 NVIIQNQQFPGFVEFRVVDTGIGVPIEKQDRLFQAFSQVDSGYTKQYGGTGLGLVISQKL 551

Query: 765 INLHGGHVSISSSDEG-VTTINCRIPSKE 792
           +   GG V   S  EG  +T+   IP  +
Sbjct: 552 VQAMGGKVKFYSLGEGLGSTVTFTIPLYQ 580


>gi|156974198|ref|YP_001445105.1| signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156525792|gb|ABU70878.1| hypothetical protein VIBHAR_01913 [Vibrio harveyi ATCC BAA-1116]
          Length = 526

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 129/260 (49%), Gaps = 10/260 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +  +   ++   SV+ E  L ++ E    +++    FV  V++ELR+PL  ++G      
Sbjct: 135 SDLVHGVISRHLSVQREVKLRKRAE---ASEKATKEFVAMVNHELRTPLNGVLGSA---D 188

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 L+ +Q QY+  +  S  +L  ++ND+LD + ++AG+M++        DL N + 
Sbjct: 189 LLDKTLLDDEQQQYLSNLIHSGDLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALT 248

Query: 656 QSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              A K  E  I   +     +  F + D +R+ QI   ++ NA+ F++ G  V L+   
Sbjct: 249 GVFAAKAAEKRIHFSIDKKLGIPEFLIGDFERVTQILVNLIGNAIKFTNLGGVV-LRVEW 307

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
            NG   F V++ G  IP +  K++F+ FV      +R   G GLGL+I ++ ++L GG +
Sbjct: 308 QNGYANFEVEDTGIGIPLEAQKALFDPFVQADRSTKRSFEGSGLGLAICKNLVDLMGGDI 367

Query: 773 SISSSDEGVTTINCRIPSKE 792
           S +S     T    +IP K+
Sbjct: 368 SFASVPRQGTMFKLKIPLKK 387


>gi|257082419|ref|ZP_05576780.1| hypothetical protein EFJG_00863 [Enterococcus faecalis E1Sol]
 gi|257416224|ref|ZP_05593218.1| hypothetical protein EFFG_01166 [Enterococcus faecalis AR01/DG]
 gi|256990449|gb|EEU77751.1| hypothetical protein EFJG_00863 [Enterococcus faecalis E1Sol]
 gi|257158052|gb|EEU88012.1| hypothetical protein EFFG_01166 [Enterococcus faecalis ARO1/DG]
          Length = 576

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 215 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 268

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 269 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 315

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 316 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 375

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 376 LIDGAKED-PKVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 433

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 434 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 492

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 493 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 552

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 553 IAIDSHLGLGTTFTITLPL 571


>gi|218247894|ref|YP_002373265.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8801]
 gi|218168372|gb|ACK67109.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8801]
          Length = 680

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 162/403 (40%), Gaps = 25/403 (6%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLS----EGVAVFGPDGRIKLSNPAFR 464
           G  I+ F  +  +++  E +    +  +   ++ L     +G  +   + ++ L NP  R
Sbjct: 247 GELIFSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIVDGAILLDNNLQLLLVNPRAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-----DLFAAIITSFDDERKSLQGTLE 519
            ++  E   +     +  +    S   +E          L    + +  D         +
Sbjct: 307 RMFGWEGREVIGVNVLELLPTELSFELSEPLQEMARKGALEDKGVQNPSDPISEPSEGQQ 366

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA----ERALTEKNEALRKADEIKNSFVQH 575
             S      ++         +    V D  R+         +      + +  K+ F+ +
Sbjct: 367 GSSTGEFRITLTQPTQRIVRILLTQVFDQQRSTVKGIAMTVQDITREVELNAAKSQFISN 426

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           VS+ELR+PL NI  F + L          ++ +++E  +  +  L  LVND+LDL+ +++
Sbjct: 427 VSHELRTPLFNIKSFIETLSEFGEDLTEEERKEFLETANHETDRLTRLVNDVLDLSRLES 486

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             +  +   + L+ ++ ++ ++      +  + +    +G L   +     LLQ+ + ++
Sbjct: 487 SKI-YHLDRVDLSQVIEQILRTHQLNAKDKELELSYQPEGNLSPVLGHYDLLLQVMTNLV 545

Query: 696 SNAMDFSSKGSTVILKAARDNGD---------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            N++ F+  G  ++L+A    GD             + + G  I  +  +++F+RF    
Sbjct: 546 GNSLKFTEPGGKIVLRAYHVRGDSSNPIHQDKIRVEISDTGIGIDPEDQEAIFSRFFRVE 605

Query: 747 HRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +R     G GLGLSIV++ IN H  H+ + S     TT    +
Sbjct: 606 NRVHTLEGTGLGLSIVKNIINKHHSHIYLVSEVGVGTTFWFDL 648


>gi|149909787|ref|ZP_01898438.1| sensor protein TorS [Moritella sp. PE36]
 gi|149807119|gb|EDM67075.1| sensor protein TorS [Moritella sp. PE36]
          Length = 970

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 117/668 (17%), Positives = 257/668 (38%), Gaps = 85/668 (12%)

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           SELA  +L+   ++N  ++ K     +D     ++    ++  N++  K  +   I    
Sbjct: 55  SELANISLQ---ITNRTTLLKNASSDID----RQNINAQLIQLNLAIGKKFQALDISELD 107

Query: 236 AIGESRKLFK--------EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG 287
                + + +         ++           +   ++   +       +++ +   +  
Sbjct: 108 NRNIRQLVLQKTNIIKDISQLNDNAKLQIQQRQQRQDSFVQVTTAVRNIFQLSQSQVANA 167

Query: 288 EAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLA 347
                + +S    + +Q      I  NL     I D++  L        ++  ++   L 
Sbjct: 168 HTFALVRLSGLYDLIEQHQDNNIIYQNLD---LIIDEDLNL------LDKMTALERYSLE 218

Query: 348 TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS-SETHKDTWHLPNGQTLHVIVTS 406
                 ++  F+ + +++ +    K  K+ +  + +   ++ KD + L       V  T 
Sbjct: 219 ----LGQIANFIINTSQVEQLTRLKPQKDELIHIIRQLVDSIKDPYRLA-----RVQSTI 269

Query: 407 NPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGV------------------- 447
                   +    +  + LE K N L     + +  L++G+                   
Sbjct: 270 LNLNTFTTLINQQSDYLQLEQKQNDLHLYISKQLSELNQGIRTLVEKQTQQAQQTSQQQQ 329

Query: 448 --AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
               +  +  I  +  +   +       +  G   +   +  ++   +    DL   +  
Sbjct: 330 KLVSWSQNILILATILSLIVIIGVMWKIVYQGIVFK--LSKHTQVIKKLAEGDLEITVEP 387

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           S D+E K +   L++  D+ L+     L  AQ              ER + ++ E L   
Sbjct: 388 SNDEEFKQMALALDIFRDNALKKQ--KLEQAQIETEKELRLHKENLERLVKQRTEQLTLI 445

Query: 566 DE---------------------IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +E                      K+ F+ ++S+E+R+P+  ++G  +LL  +    L++
Sbjct: 446 NEKLNNESVGHAKAKQQAEDANNAKSVFLANMSHEIRTPMNGMLGTLELLSDT---PLST 502

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q  Y + I  S   LL+++NDILD + ++AG ++++   + L  L N V   +  +   
Sbjct: 503 QQQTYTQTILTSGENLLDILNDILDYSKIEAGHIEVSNRAVNLQRLGNNVIDLMRARAES 562

Query: 665 NNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             + +      KL    +AD  +L QI   +++NA+ F++ GS V L  A  +    FS+
Sbjct: 563 KGLNLTFNLADKLDIWVLADLGKLRQIIINLVNNAIKFTTSGS-VTLAIATHDEQLSFSI 621

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            + G  I +D  K+VF+ F   A+     G GLGL+I +  ++   G +S++S +   + 
Sbjct: 622 TDTGCGIADDKQKAVFDAFTQVANLSSATGTGLGLAISQRLVSAIQGTLSLTSIENQGSC 681

Query: 784 INCRIPSK 791
              +IP +
Sbjct: 682 FYFKIPLQ 689


>gi|156743078|ref|YP_001433207.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii
           DSM 13941]
 gi|156234406|gb|ABU59189.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii
           DSM 13941]
          Length = 1187

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/595 (17%), Positives = 212/595 (35%), Gaps = 44/595 (7%)

Query: 223 KKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
           ++ T  E   +   I E   L    +        A    F + +        +  +I   
Sbjct: 385 RRRTRQELAQWHDVISELFYLIVSALDHADDMPRAN-LLFLQRIRLALAQERERSRIELR 443

Query: 283 LNSFGEAGIAIDVSKEITVNDQLTHTYEILHN----LTVAIAIFDQNRYLQFHNRSFVEL 338
             +  ++   +++S+ + +   L +  E+L      L V      ++ YL  ++      
Sbjct: 444 TRTIEQSHTLLEISQSMLIAQDLKYLLEVLAQRLPELPV------RDGYLVLYD------ 491

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLN---WKTWKENIFSVYKSSETHKDT---- 391
            +         P    ++  L    +LP   +   + + +    ++    + +       
Sbjct: 492 -DFPPTTNLEAPVWGRVVLALHEGRRLPLPPDGISFPSRRIVPDALLCEHQPYAFIVTPL 550

Query: 392 -WHLPNGQTLHVIVTSNPRGGTIWMFENLT----------VQVDLETKYNTLVKVQGETI 440
            + L +   + V V     G    + + ++               E             +
Sbjct: 551 FFGLRDFGFIAVQVGPREGGVYHMLAQEISSALQSVFLWRDYRRSEYARRESEARLHTIV 610

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           +H+   +     +GR  + N   R+L      +                 +        F
Sbjct: 611 EHMPVALWAKDLNGRYIMQNSVMRTLTGDNSWKDEDSGGAALAEWAPYEAWAREGRTVSF 670

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
              +   D  R        +  D  +   +  + +     T  +   S  A+ +  E   
Sbjct: 671 EHALLVQDQPRLFKHIIAPVQVDGTVTAILGLMFDITEQRTLEDSLRS--AKESAEEARR 728

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           A   A+  K+ F+ ++S+ELR+PL +I+G+  +L+     + +    + +  I +S   L
Sbjct: 729 AAEAANRAKSVFLSNISHELRTPLNSILGYAQILEHDP--TTSDYARKSLRVIQSSGEQL 786

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
           LNL++D+LDLA ++AG +++      L+ +L  +   +  +    N+             
Sbjct: 787 LNLIDDLLDLAKIEAGKIEVRPDRFALDAMLATICDMMQERAVARNLAFAREIANLPRLV 846

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR---DNGDFIFSVKNNGSSIPEDMCKS 737
           V D +RL Q+   +LSNA+ F+ +G  V LK  R   +     F V + G  I  +  + 
Sbjct: 847 VGDEKRLWQVLVNLLSNAIKFTREG-VVTLKVERLPDNRDKVRFEVIDTGIGIAPEYREV 905

Query: 738 VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +F  F     +   +G GLGL+I    + L GG + + S+    +     IP  E
Sbjct: 906 IFRPFEQLGAQTGEKGTGLGLAIARELVTLMGGTLRVQSAPGAGSRFWFAIPLPE 960



 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 89/306 (29%), Gaps = 43/306 (14%)

Query: 42  ILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGK---DETPEIIGQ 98
           + L R R +LA++   +   L      + + H+LL  +  + I  D K   +   + + +
Sbjct: 422 LFLQRIRLALAQERERSRIELRTRT--IEQSHTLLEISQSMLIAQDLKYLLEVLAQRLPE 479

Query: 99  LHQRIDIPQTDTDL-----------------LSFENWLK-FHHYIKLSKA---TEKLRKE 137
           L  R        D                  L     L      I         + L  E
Sbjct: 480 LPVRDGYLVLYDDFPPTTNLEAPVWGRVVLALHEGRRLPLPPDGISFPSRRIVPDALLCE 539

Query: 138 GQSFDLVAE-----TQNDCAIKIE-GRVSGSCAFLRILSLDGIYSEL---AETTLKCKKL 188
            Q +  +        ++   I ++ G   G    +    +      +    +        
Sbjct: 540 HQPYAFIVTPLFFGLRDFGFIAVQVGPREGGVYHMLAQEISSALQSVFLWRDYRRSEYAR 599

Query: 189 SNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEI 248
               +    + + +   +W +D  G  +  N   +  T       + + G +     E  
Sbjct: 600 RESEARLHTIVEHMPVALWAKDLNGRYIMQNSVMRTLTGDNSWKDEDSGGAA---LAEWA 656

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA----GIAIDVSKEITVNDQ 304
                +      +F E    ++        I+  +   G      G+  D++++ T+ D 
Sbjct: 657 PYEAWAREGRTVSF-EHALLVQDQPRLFKHIIAPVQVDGTVTAILGLMFDITEQRTLEDS 715

Query: 305 LTHTYE 310
           L    E
Sbjct: 716 LRSAKE 721


>gi|213584048|ref|ZP_03365874.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 396

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 7/224 (3%)

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
           + F+  VS+ELR+PL  IIG  DLL+T +   L     + V  ++ SS++LL +++DILD
Sbjct: 1   SMFLATVSHELRTPLYGIIGNLDLLQTKE---LPKGVDRLVTAMNNSSSLLLKIISDILD 57

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLL 688
            + +++  +K+        +++N +  +    +    + +    +  +  S   D  RL 
Sbjct: 58  FSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQ 117

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH- 747
           Q+ S +LSNA+ F+  G  ++L    D       V++ G  IP      +F+ F      
Sbjct: 118 QVISNLLSNAIKFTDIG-CIVLHVRCDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTG 176

Query: 748 -RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +   +G GLGL+I E  I++  G +S+ S     +    RIP 
Sbjct: 177 VQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 220


>gi|170722660|ref|YP_001750348.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida W619]
 gi|169760663|gb|ACA73979.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           putida W619]
          Length = 643

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 119/253 (47%), Gaps = 13/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++   L S+Q
Sbjct: 243 EQKQAIAQLIQAREEAEQANGAKSEFLAMMSHELRTPMNGVLGMLQLLETTQ---LTSEQ 299

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++Y    S S+  LL ++NDILD + ++   ++L +    L +L+    QS      +  
Sbjct: 300 AEYTAVASESTGHLLKVINDILDFSRIERTTLQLEHIDFNLGELIASSVQSFQHSAQQRG 359

Query: 667 IRIKVISD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDF 719
           + +++      +    V D  R+ QI   ++ NA+ F+ +G  V ++A      R    F
Sbjct: 360 LDLQLQLPTQSERLQVVGDPTRIRQILLNLVGNALKFTERG-QVQVEARWQALDRQTLWF 418

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SV++ G  I  +  + +F  F         +  G GLGLSI  +     GG +   S 
Sbjct: 419 TCSVRDTGIGIDSERLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAERMGGKLRGESH 478

Query: 778 DEGVTTINCRIPS 790
           +   +T    +P 
Sbjct: 479 EGLGSTFTLEMPL 491


>gi|86748376|ref|YP_484872.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86571404|gb|ABD05961.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1122

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + +  L    E    A+  K+ +V  +S+ELRSPL  I G+  LL+ 
Sbjct: 641 QTTLLMQEIDAHRQTDAELQRAKEVAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               SL  +    +  +  S+  L  L++ +LD++ ++AG + L+   +   + L+++  
Sbjct: 701 DA--SLPPRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDEVRFGEFLDQLVG 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +    ++         L   V AD +RL Q+   +LSNA+ F+ +GS V       
Sbjct: 759 MFRLQATAKDVDFVFKRPQYLPPVVYADEKRLRQVLINLLSNAIKFTQEGS-VHFIVHYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
           N      V++ G  I  D  + +F  F   A        G GLGL+I +    + GG +S
Sbjct: 818 NPVAELEVRDTGPGIHADDLERIFAPFERGALGVSQPHTGTGLGLTISKLLAGVMGGDLS 877

Query: 774 ISSSDEGVTTINCRI 788
           ++S+    +T   ++
Sbjct: 878 VTSTLGQGSTFRVKL 892


>gi|332185226|ref|ZP_08386975.1| his Kinase A domain protein [Sphingomonas sp. S17]
 gi|332014950|gb|EGI57006.1| his Kinase A domain protein [Sphingomonas sp. S17]
          Length = 413

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 149/366 (40%), Gaps = 31/366 (8%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
           E +  TL  +  E +D + E V +    GR+ L+N A R+L             IR+ AA
Sbjct: 59  EEQGTTLSPLLAEALDAIIEPVLLI-EGGRVILANRAARTLLGAHIVGEDARIAIRHPAA 117

Query: 486 TCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
                   S   +   +++           G+L    D   E  +  + N Q ++  ++ 
Sbjct: 118 AERLMAPGSVELEQPISLVG---------LGSL----DHRWEMRVADVTNGQRVVHLIDQ 164

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
           T    AER              ++  FV + S+ELR+PL +I+GF + L     G     
Sbjct: 165 TGHDAAER--------------MRVDFVANASHELRTPLASILGFIETLGDEA-GDDPEI 209

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           ++++++ +   +  +  LV D++ L+ ++A   +    ++ L DL+N+V +         
Sbjct: 210 RARFLKVMFDEARRMQRLVEDLISLSRIEADKYRQPAQSMDLADLVNDVWEEFLDSGSPR 269

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
              I       L     DR +L Q+   ++ NAM +    + + +   RD      SV +
Sbjct: 270 AEDIACDLAEDLPPIAGDRAQLSQMLHNLIGNAMKYGRVETPIRVSLNRDGEMLRLSVAD 329

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +  RF            G GLGL+IV+  +  H G + I+S     TT
Sbjct: 330 RGEGIAAGHIPRLTERFYRVDSGRSRSIGGTGLGLAIVKHIVERHRGRLEITSEVGMGTT 389

Query: 784 INCRIP 789
           +  R+P
Sbjct: 390 VTVRLP 395


>gi|325916716|ref|ZP_08178973.1| Signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537065|gb|EGD08804.1| Signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 726

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RA+T      R A++ K+ F+ ++S+E R+PL  + G T++L T++   L+++Q + +  
Sbjct: 173 RAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTR---LDAEQKECLNT 229

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KV 671
           I AS+  LL+LV ++LD++ ++AG ++++     L +++  V   +  +     +     
Sbjct: 230 IQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREIIGSVNMILQPQAKGRRLEYGTQ 289

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKN 725
           ++D        D   L Q+   ++ NA+ F+  G  V+L+  R +G         F V++
Sbjct: 290 VADDVPDLLKGDTGHLRQVLLNLVGNAVKFTEHGH-VLLRVTRVSGSVDDAVRLRFDVED 348

Query: 726 NGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  +P DM   +F  F         +  G GLG +I +  +   GG +    +  G + 
Sbjct: 349 TGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGRIGFEENKPGGSV 408

Query: 784 INCRIP 789
               +P
Sbjct: 409 FWFELP 414


>gi|229135508|ref|ZP_04264294.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196]
 gi|228647973|gb|EEL04022.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196]
          Length = 484

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 122/272 (44%), Gaps = 7/272 (2%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + +  L++ I P+ +   +       + +R  + L    E   + +E +   + ++S++
Sbjct: 209 RIKEGDLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKGSIEMQTQYEENRKELISNISHD 265

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   + 
Sbjct: 266 LKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVP 324

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             + TI LN  + E+ + +   + E  I + +          AD +++ ++ S ++ N++
Sbjct: 325 FQFETIELNVFMQELLEEMQMDLSEGGIEVYLQLHSSPLYVTADCEKINRVISNLIHNSV 384

Query: 700 DFSSKG-STVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
            +  K    + +    DN   I  V +NGS I  D    +F RF            G GL
Sbjct: 385 KYMDKEAKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGL 444

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  +  HGG +   S     T+I   +
Sbjct: 445 GLAIAKQIVEEHGGEIWAESKLGEGTSIFFSL 476


>gi|227538423|ref|ZP_03968472.1| signal transduction histidine kinase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241705|gb|EEI91720.1| signal transduction histidine kinase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 542

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 161/350 (46%), Gaps = 29/350 (8%)

Query: 460 NPAFRSLWKTEENRLSPGTHIRNI--AATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N A R  WK +         +  I      S   +     ++ A ++T+   E K L   
Sbjct: 38  NEALRLCWKEDIAIALIDVQMPEINGFEFVSILKSNPKTREIIAIMVTAISKEDKYL--- 94

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVT--------------DSVRAERALTEKNEALR 563
           ++ L+   ++Y   PL    T+    +                +  +++  L    E   
Sbjct: 95  IQGLNSGAVDYLYKPLSPEITIAKVKSFMQQVLTQLQIKEKNAELEQSKLELIRSKEEAE 154

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A + K  F+ ++S+E+R+P+  I+G T +L++S   +L+S+Q  +V  + ++S  LL +
Sbjct: 155 QARKSKEIFLANMSHEIRTPINGIMGITQMLRSS---TLSSEQKDWVNRLDSASHSLLLI 211

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-A 682
           +NDILD++ +D+G+MKL +  +V  DL +++ +    K    N+  ++  D  L ++V  
Sbjct: 212 INDILDISKIDSGMMKLEFENLVFQDLFDDLNKIFKIKAANKNLEFEMNIDSDLPTYVKT 271

Query: 683 DRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD-FIFSVKNNGSSIPEDMCKSV 738
           D  RL QI S  +SN + F+ KG     + +   +DN     FSVK+ G  I  +    +
Sbjct: 272 DSLRLQQILSNFISNGLKFTEKGKVTLSIRILEVKDNSYFIRFSVKDTGIGIRAESLNKI 331

Query: 739 FNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           F  F         +  G GLGL+IV+   +L  G V  +S     +  + 
Sbjct: 332 FLAFEQADDGITKKFGGTGLGLAIVKRLADLFNGSVDATSVYNEGSEFSF 381


>gi|322641155|gb|EFY37797.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|323229436|gb|EGA13559.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
          Length = 862

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 304 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 363

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 364 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 420

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 421 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 479

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 480 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 537

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 538 LKSVPGVGTCVSLVLPLQE 556


>gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
 gi|198270906|gb|EDY95176.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
          Length = 1325

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 2/225 (0%)

Query: 567  EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            + K  F  ++S+E R+PLT II  T+ L  S   SL+      ++ I  ++     L+++
Sbjct: 797  QAKLQFFANISHEFRTPLTLIISQTEALLQSP--SLSPYFRVRLQRIYRNTFQFRELISE 854

Query: 627  ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
            +LD   ++ G + L+   + +   L E+ +    +    NI     +D +     ADR++
Sbjct: 855  LLDFRKMERGKLTLHVCQLDVIAFLREMTEEFQNQAQVKNITFSFRADNEEACCWADRRQ 914

Query: 687  LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
            L ++ S +LSNA  ++  G  V L A          V ++G  IPE+    VF+RF    
Sbjct: 915  LRKVISNLLSNAFKYTPVGGKVELVAGVTEKGIEIKVIDSGEGIPEESLPCVFDRFYQAD 974

Query: 747  HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             +    G G+GL++ +  + LH G +S+ S     +     +P +
Sbjct: 975  TKMSSSGSGIGLALAKGIVELHHGVISVKSVMGYGSIFTVLLPVE 1019


>gi|78223152|ref|YP_384899.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78194407|gb|ABB32174.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 690

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 164/406 (40%), Gaps = 40/406 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
            L        ++    ++  S+ + V   +  +K+ N      +  +   L   +  R +
Sbjct: 270 SLSLDLEKSEELYKSLLEDASDAIVVTDENDMVKMVNKMAEDFFGHDAAELVGLSLSRML 329

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               ++  +    +   A       +E K L+   EL+   ++  +I+ +   + +   +
Sbjct: 330 TLVGTQNSSIVYNFFQVAGTGKHVAEEIKFLRKDKELVVG-LIHANIVTIGAERLIQAII 388

Query: 544 NVTDSVR-AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
                 R     L +    L + +++K+SF+   S+EL++PLT I+G+ +L+ T     +
Sbjct: 389 RDVTREREILLNLEKSAADLARLNKMKDSFLGIASHELKTPLTVIMGYAELILTDPPCQV 448

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           +      V  I+ ++  L N+V D++D++ +D   ++L  S + +N L+ +    +   +
Sbjct: 449 DPNIIDMVNNIAGAANRLDNIVKDMVDVSMIDEKRLQLKLSEVDVNRLVEDSLNELRFFV 508

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-------- 714
                ++    D  + +   D  RL+Q+ S ++ NA+ F+  G  +++            
Sbjct: 509 SMRKQQLVFELDDAIPAIKGDTVRLMQLLSNVIGNAIKFTPDGGRIMVSTRAKYILRSKQ 568

Query: 715 ----------------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN----AHRG----- 749
                            +     +V + G  I  D    +F++F        H       
Sbjct: 569 IPTVDPVQSLVNIGKDQHLYVEITVADTGIGIDIDDQLRIFDKFYEAGNIEEHSSGKVAF 628

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISS---SDEG--VTTINCRIPS 790
           + RG GLGLSI +  + +HGG + + S   + +    +T +  +P 
Sbjct: 629 KSRGAGLGLSISKGIVEMHGGEIWVESPGYNPDQFPGSTFHIVLPL 674


>gi|73538366|ref|YP_298733.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 1152

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 104/242 (42%), Gaps = 3/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA     ++ E L + D  K +F  +VS+E R+PLT ++G  + L   +   L++   + 
Sbjct: 335 RAYEEEKQRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLGPVEDLLMRRSDELSAAAKED 394

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  +  +   LL LVN +LD + ++AG M+  Y    L     E+     +      + +
Sbjct: 395 LAVVGRNGLRLLRLVNSLLDFSRIEAGRMQATYEPTDLARFTEELASLFRSACERAGLTL 454

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V  D        DR    +I   +LSNA  F+  G  + +            V + G+ 
Sbjct: 455 TVDCDTLPEPAFVDRAMWEKIVLNLLSNAFKFTQAG-RIAVSLRTIGDKAELRVADTGTG 513

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP D    +F RF  V   H     G G+GL++    I LHGG +   S+    TT    
Sbjct: 514 IPADELPRIFERFHRVQGTHGRTHEGAGIGLALTLELIKLHGGTIRADSTPGAGTTFIVE 573

Query: 788 IP 789
           IP
Sbjct: 574 IP 575



 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 143/349 (40%), Gaps = 10/349 (2%)

Query: 449  VFGPDGRIKLSNPAFRSLWKTEENRL-----SPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            +   D  ++L+N    +L +     +            +          +    DL   +
Sbjct: 659  LLSKDYEVELANDGQDALARIHARSVELLLTDVMMPGLDGLGLLHALRTDPKTADLPIIM 718

Query: 504  ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
            +++   E    +G      D + +        A+             A  AL  + +ALR
Sbjct: 719  LSARAGEESLAEGVEAGADDYLTKPFSARELLARVGTHVKMARFRREALEALRHRGKALR 778

Query: 564  KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
            +AD  K+ F+  +++ELR PL  I     +L  S+  +  ++ +Q  + I      L+ L
Sbjct: 779  EADRRKDEFLNILAHELRGPLATISNTAHILGQSRTDTELARDAQ--KRIERQLRHLVRL 836

Query: 624  VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
            V+D+LD   +  G ++L+   + L   + +  ++      E    + +    +     AD
Sbjct: 837  VDDLLDTNRITQGKLQLHIERVDLQAAIRDAIETCRPLAEELEREVTLDVPAESIWLDAD 896

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF- 742
              RL Q+   +LSNA  ++  G  V L       + +  VK++G  IP     S+F+ F 
Sbjct: 897  PVRLAQVIGNLLSNAYKYTEHGGHVWLSVEPRGDEVLLRVKDDGVGIPAAALPSIFDLFM 956

Query: 743  -VSNAHRGQRRGVGLGLSIVESFINLHGGHVS-ISSSDEGVTTINCRIP 789
             V ++    R G+G+GL++V+  +++HGG V   S      +    R+P
Sbjct: 957  QVRSSLNRARGGLGIGLALVKRLVDMHGGQVEGFSDGPSRGSEFVVRLP 1005


>gi|71016304|ref|XP_758886.1| hypothetical protein UM02739.1 [Ustilago maydis 521]
 gi|46098317|gb|EAK83550.1| hypothetical protein UM02739.1 [Ustilago maydis 521]
          Length = 1356

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 12/238 (5%)

Query: 559  NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
             EA   A+  K+ F+ ++S+E+R+P+  IIG T L   ++   L+  Q + +  +S  + 
Sbjct: 843  REAAELANRSKSEFLANMSHEIRTPMNGIIGMTALTLETE---LSRSQRENLVTVSTLAG 899

Query: 619  ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
             LL +++DILD++ ++AG M +      L  ++  V ++++ +  +  + +         
Sbjct: 900  NLLAIIDDILDISKIEAGRMNVEEIPFSLRGIVFSVLKTLSVRATQKKLNLMYEVAPDCP 959

Query: 679  -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILK------AARDNGDFIFSVKNNGSSIP 731
               + D  RL QI + ++ NA+ F+  G  V LK         +     F   ++G  I 
Sbjct: 960  DPLIGDALRLKQIITNLIGNAVKFTDAGGRVALKCKLSKMVGSNQAMLEFCASDSGIGIK 1019

Query: 732  EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +D    +F+ F        R   G GLGLSI    +NL GG + + S+    +     
Sbjct: 1020 QDKLDVIFDTFCQADGSTTRKYGGTGLGLSISRRLVNLMGGDLWVRSNYGKGSDFFFT 1077


>gi|218887223|ref|YP_002436544.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758177|gb|ACL09076.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 678

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 152/374 (40%), Gaps = 32/374 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           + N          + + EGV V    GRI+  N A  +++    N+L        +    
Sbjct: 248 QLNEQKGRLEAVFNGMHEGVMVLDATGRIESMNRALTAMFAGIGNKLGATPLEATMKPEL 307

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R  +E         ++ S +    S+Q   +L      E S++P  +A      +   D
Sbjct: 308 QRMVDE---------MLVSPNARGTSMQ--TDLGEGHAFEISLVPFRDASGQRMVLVFHD 356

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E           K + I+  FV +VS+EL++PLT+I G+ + L  +   S + + +
Sbjct: 357 ISERE-----------KLERIRRDFVANVSHELKTPLTSIKGYAETLLEAPPSSRD-QMA 404

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            ++  I  ++  +  +VN +L LA  +    K+  + +   ++L +  + +       +I
Sbjct: 405 AFLRTILKNANHMTKMVNSLLVLARSEHKGDKVALTGVDAAEVLRQTVRELEPVATRKDI 464

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            ++          +ADR  L+++F  +L NA+ +S   + V + A   +G     V + G
Sbjct: 465 VLENGVGAGPLVVLADRDGLVEVFRNLLDNAIKYSPPQTRVAVSATAADGRVTLCVSDQG 524

Query: 728 SSIPEDMCKSVFNRFVSNAH--RGQRRGV-GLGLSIVESFINLHGGHVSISSSDEG---- 780
             IPE   + +F RF        G + G  GLGL+I    +  HGG + + S  +     
Sbjct: 525 PGIPEKSRERIFERFYRLDRDGDGTKNGSAGLGLAICRRIVMSHGGDIWVESPLDAATRT 584

Query: 781 VTTINCRI--PSKE 792
                  +  P  E
Sbjct: 585 GAAFFVMLFSPRPE 598



 Score = 45.3 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 60/193 (31%), Gaps = 22/193 (11%)

Query: 241 RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI- 299
           R L +      M + +  +  +   +  +     +         +    G+A ++ + + 
Sbjct: 195 RPLLRGMETMAMAAQAIGQGEYGRRIRDIPGRELR-------PLAHAINGMAHNIEQHLH 247

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
            +N+Q      + + +   + + D    ++  NR+   ++      L   P    +   L
Sbjct: 248 QLNEQKGRLEAVFNGMHEGVMVLDATGRIESMNRALTAMFAGIGNKLGATPLEATMKPEL 307

Query: 360 RS--ANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
           +      L       T  +       + E     +   +GQ +            + +F 
Sbjct: 308 QRMVDEMLVSPNARGTSMQTDLGEGHAFEISLVPFRDASGQRM------------VLVFH 355

Query: 418 NLTVQVDLETKYN 430
           +++ +  LE    
Sbjct: 356 DISEREKLERIRR 368


>gi|320355414|ref|YP_004196753.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123916|gb|ADW19462.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 608

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 145/364 (39%), Gaps = 29/364 (7%)

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                  +++ V     D +I   N A  +L+      +              R     +
Sbjct: 255 LEAVFSSMADAVVAIDADKKIIRMNQAAAALFGLPSEGVKGKA-----VQGVIRNPYLLE 309

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
             D   A  T  + +     GT  +L    L+   +PL +           D       +
Sbjct: 310 MVDCTLAHNTPQEQKVTLFNGTDPIL----LDTHAVPLRDED---------DRSMGVLLV 356

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
                 L + + I+  FV +VS+EL++P+T I G+ + L    L   ++   +++  +  
Sbjct: 357 MNDLTKLNRLENIRQDFVANVSHELKTPITAIKGYVETLLDGALEDQDN-ARRFLSIVVR 415

Query: 616 SSTILLNLVNDILDLATVD--AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +  L  +V+D+L L+ ++       ++ +   +  +L    Q+ A +  E  I I+V S
Sbjct: 416 QANRLDAIVDDLLTLSRIEDREQRRDISLTVAEVGPVLESALQTCAVQADEKGIIIQVES 475

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-----ARDNGDFIFSVKNNGS 728
           D +  + + ++  L Q    +L NA+ +S +GS + L+       +       SV +NG 
Sbjct: 476 DEEWYAPI-NQPLLEQAVINLLGNAIAYSPQGSLITLRCQGSRNRQGEEFVHLSVIDNGP 534

Query: 729 SIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I ++    +F RF     A    + G GLGL+I +     H G V + SS    +T   
Sbjct: 535 GIAKEHLPRLFERFYRCDKARSRDQGGTGLGLAIAKHIAQAHNGTVEVESSLGKGSTFTL 594

Query: 787 RIPS 790
            +P+
Sbjct: 595 ILPA 598


>gi|256424519|ref|YP_003125172.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256039427|gb|ACU62971.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1306

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 163/394 (41%), Gaps = 33/394 (8%)

Query: 411  GTIWMFENLTVQVDLETKYNTLV-KVQGETIDHLSEGVAVFGPDGR-----IKLSNPAFR 464
            G I + +++T   ++  KY   V  +    +++       F P+       ++  N  + 
Sbjct: 651  GRILLQQSITRTQEITLKYRENVFSISFAALNY-------FHPEKNQYAYMLEGFNNEWL 703

Query: 465  ----SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
                S+ K     L PG +I  + A+ +         +L   I+  F   R  L   L +
Sbjct: 704  TTDGSVRKATYTNLDPGDYIFRVRASNNDGIWTPAPLELHITILPPF--WRTPLAFFLYI 761

Query: 521  LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            L           +   +  L      +   A+R        + + D +K  F  ++S+E 
Sbjct: 762  LLIIGALILARRVVLERERLRSRIEQEKQEAQR--------IHELDALKIRFFTNISHEF 813

Query: 581  RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            R+PL+ II   + +       + +   Q +  +  ++  LLNLVN +LD   ++   +KL
Sbjct: 814  RTPLSLIITPLEKIL---GKGVEANIQQQLILVQRNARRLLNLVNQLLDFRKMEVQEIKL 870

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + S   +   + ++  S +    +  I +   S  K  + + D  ++ +I   +LSNA  
Sbjct: 871  HTSEGDIVAFVKDLTTSFSDLSEKKQIHLDFHSSVKALNMLYDPDKIEKIIFNLLSNAFK 930

Query: 701  FSSKGSTVILKAARDNG-DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLG 757
            F+ +   + +     +G      VK+NG  IP +  + +F RF  +   G    +G G+G
Sbjct: 931  FTPEQGNISVDVQVQHGSTLAIIVKDNGIGIPLEQQERIFERFFQHDIPGSLLNQGSGIG 990

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            LSI   F+ LH G +++ S+    +T    +P K
Sbjct: 991  LSITREFVKLHSGTITVDSAPGMGSTFTILLPLK 1024


>gi|218901846|ref|YP_002449680.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218537537|gb|ACK89935.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 461

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSQIHISVIEENKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITMEDEGEGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFTISLPS 455


>gi|108805571|ref|YP_645508.1| histidine kinase [Rubrobacter xylanophilus DSM 9941]
 gi|108766814|gb|ABG05696.1| histidine kinase [Rubrobacter xylanophilus DSM 9941]
          Length = 257

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 5/247 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +   A R     +  L + + I+  FV +VS+EL++P T++    + L+   +     + 
Sbjct: 4   ERGSARRQGYVDSGELERVNRIRRDFVANVSHELKTPATSLKLLAESLEQ-AIEEDPEQA 62

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +   +   +  L  L+ D+LDLA +++         + L  ++  V   +     E  
Sbjct: 63  RLFAAQLRKETERLARLITDLLDLARLESEERSEYPEIVDLRGVVMSVLARMRRVAREKG 122

Query: 667 IRIKV--ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           I ++          +   D  +L  + + ++ NA+ ++  G  V +     NG+    V 
Sbjct: 123 IELRWKRFGRASEYTVRGDETQLASMLTNLVDNAVKYTQPGGRVEVTGGCANGEVFIRVS 182

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  IP D    +F RF            G GLGLSIV+     HGG V++ S     +
Sbjct: 183 DTGIGIPPDKLPRIFERFYRVDKARSKATGGTGLGLSIVKHVAENHGGRVTVESVPGEGS 242

Query: 783 TINCRIP 789
           T    +P
Sbjct: 243 TFTVYLP 249


>gi|315644230|ref|ZP_07897400.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315280605|gb|EFU43894.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 460

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +     ++  + + + ++++  FV +VS+E++SPL +I GF+  L+T +L     +Q
Sbjct: 217 ELGQLADHFSQMAKGIAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLS--EEQQ 274

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y+  I A S  +  L   +L LA++D     L  ST  + + + +V     T+    +
Sbjct: 275 QHYLSIIEAESRRMSQLSKQLLMLASLDKEENILEKSTFDVAEQIKQV--LFHTEWSWRS 332

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKN 725
             + +           D+Q L Q+++ +++N++ F++    + L+   +DN      + +
Sbjct: 333 KELTMDMSLPSTYIHGDQQLLHQVWTNLMTNSIKFTAPEGIISLRITGQDNPSCSIEISD 392

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP +    +F+RF        R     GLGL+I +  + +HGG + ++S     TT
Sbjct: 393 TGIGIPPEHLPHIFDRFYRVDEARDRSEGSSGLGLAITQKIVQMHGGRIEVTSQPGEGTT 452

Query: 784 INCRIPS 790
               +P+
Sbjct: 453 FTVTLPT 459


>gi|297582942|ref|YP_003698722.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141399|gb|ADH98156.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 807

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 158/391 (40%), Gaps = 26/391 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
            +   E                ++    I+ ++EG+ +   DG +   N     L   + 
Sbjct: 433 ILGQLEGALEVAHANELIKESKEINQAIIESINEGIQLVSNDGTLLAYNEYSCELVGCKL 492

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS-----FDD-ERKSLQGTLELLSDSV 525
                   +++       + ++ +  + FA+ I       +DD +R      +E     +
Sbjct: 493 KDSLDQDVLQHKFNWVHPFSSQFEEPESFASFIIQATADMYDDFKRFQTSAIIEGARRDI 552

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             YS       +++ T     D  R             + D +K   V  V++ELR+PL+
Sbjct: 553 AIYSTSVRVGEESIGTVFVYRDITR-----------EAEVDRLKTELVSTVNHELRTPLS 601

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           +I+GFT+ +    +     ++  Y+E I + S  L  LVN+ LDL  +++   +++   +
Sbjct: 602 SIMGFTERMLNKDVS--EERRRVYLETILSESERLSQLVNNFLDLQKIESLPDEMDLEPV 659

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            ++D L +   +     H     +KVI              L Q+F  +LSNA  +S +G
Sbjct: 660 KISDSLRQAMSAFHPSEHH---ELKVIDSLTDTKVNGHSASLHQVFLNLLSNAQKYSPEG 716

Query: 706 STVILKAARDN--GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIV 761
            T+ ++   D+   + +  + + G  I +     +F +F    + H G  +G GLGL++ 
Sbjct: 717 GTITVETELDDAKKNVLIHISDEGIGIAKKDHDRLFMKFSRIKDQHGGTIKGTGLGLALS 776

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           +  +   GG + + S     +T    IP KE
Sbjct: 777 KELMEAQGGDIRVRSEAGEGSTFTVVIPLKE 807


>gi|160937677|ref|ZP_02085037.1| hypothetical protein CLOBOL_02567 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439322|gb|EDP17074.1| hypothetical protein CLOBOL_02567 [Clostridium bolteae ATCC
           BAA-613]
          Length = 468

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 114/237 (48%), Gaps = 5/237 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   ++ L K +E + +F+ +VS++ RSPLT+I G+ + +    + +      +Y+  + 
Sbjct: 230 LNYMSDELNKMEEYQKNFIANVSHDFRSPLTSIKGYLEAILDGTIPA--EMYEKYLSRVI 287

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + +  L  L   +L L ++DA    L+ +   +N ++ +   S        N+   +   
Sbjct: 288 SETERLHKLTESMLTLNSLDARGY-LSRTNFDINRVIKDTAASFEGTCESKNVSFDLTFS 346

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +    AD  ++ Q+   ++ NA+ FS   ST+ ++A+        SVK+ G  IP+D 
Sbjct: 347 DDIQMVFADLGKIQQVMYNLIDNAIKFSHHDSTIYIQASGRYEKIFVSVKDTGIGIPKDS 406

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            K ++ RF          ++G GLGLSIV+  I  HG ++ + S++   T     +P
Sbjct: 407 LKKIWERFYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENIDVVSTEGVGTEFIFSLP 463


>gi|110637539|ref|YP_677746.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280220|gb|ABG58406.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 373

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 165/373 (44%), Gaps = 16/373 (4%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T + DLE++Y          ID+  +G+      G I+  NP+   ++      L  G +
Sbjct: 13  TSRFDLESRYQA-------IIDNAVDGIITIDDRGIIESVNPSAIKMFGYASTEL-IGQN 64

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQ 537
           I+ +     R  ++                + + + G  +   +   +L  S + L N +
Sbjct: 65  IKILMPEPDRGNHDKYIGTYHETGKGKIIGKGREVIGKRKNGTMFPFLLSISEVILENKK 124

Query: 538 TML-TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  ++++    + AL ++ +      E+K+ FV   S+E R+PL+ I+    L+  
Sbjct: 125 IFTGIIHDISELREVKEALAKERDL----SELKSRFVTMASHEFRTPLSTILSSVSLISR 180

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                   K+ ++V  I +S   L +++ND L L+ ++ G++  +     + +LL EV  
Sbjct: 181 YNDPKDEDKRLKHVNRIKSSVNNLTSILNDFLSLSRLEEGMVLNDPIEFSIQELLYEVVD 240

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            + + + E  + I +  + ++     D+  +  I   ++SNA+ +S +G  + ++ A   
Sbjct: 241 EMNSILKEGQV-ISISKENEIQKVFLDKNLVRNIMINLVSNAIKYSGEGQEIRIQTAATE 299

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
                ++ + G  IPE+    +F+RF    +     G GLGL+IV+ +++L  G +  +S
Sbjct: 300 QVLSITIIDEGIGIPEEDQSYLFSRFFRAHNATNIPGTGLGLNIVKKYLDLLRGRIEFTS 359

Query: 777 SDEGVTTINCRIP 789
                TT   +IP
Sbjct: 360 KQSQGTTFIVQIP 372


>gi|332668377|ref|YP_004451165.1| multi-sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332337191|gb|AEE54292.1| multi-sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 557

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 143/363 (39%), Gaps = 25/363 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +     K     I+ L +        G +  +N     L       L     I    +T
Sbjct: 216 AQLMFEKKRAEAVINSLDDASIGVDKHGTVLFANQKALQLLG-----LEAAETIGQATST 270

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
            ++        DL       F  E  S     +++ D+   Y ++     Q       V 
Sbjct: 271 LAQR------NDLLK-----FMLENPSGTSPFKIVMDNRENYFLLDSYKIQVDEEPGIVF 319

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                   L      L K D  K +F+  +S+EL++P++ I     LL+  K G+LNS Q
Sbjct: 320 -------VLKNITTFLEK-DVAKTNFLATISHELKTPISGIKLGLQLLENPKTGALNSDQ 371

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            Q ++ I   S  LL + +++L++  ++ G + +    I  ++L+    Q++  +  E  
Sbjct: 372 LQLLQDIKYDSDRLLRITSELLNMTQLETGKIDIKLEAIDPSELVGTALQALFPQTQEKK 431

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +++       L     D ++ + +   +LSNA+  +S+   + +         +FS+++ 
Sbjct: 432 LQLSTQFAPNLPKVWCDPEKTIWVLINLLSNAIRHASESDRLTVSIESQGQQVLFSIQDQ 491

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I  +  + +F ++V         G GLGL+I   F+   GG + ++S      T   
Sbjct: 492 GPGIAPEFQEKIFEKYVKAPGSKST-GTGLGLAISRDFVEAMGGKIGVNSQLGHGATFFF 550

Query: 787 RIP 789
            +P
Sbjct: 551 DLP 553


>gi|251778968|ref|ZP_04821888.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083283|gb|EES49173.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 515

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/499 (21%), Positives = 200/499 (40%), Gaps = 47/499 (9%)

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLAT-----NPSNDELLEFLRSA 362
              IL N    I I DQ    ++ N+ F+  ++ +   +       N +ND +L      
Sbjct: 15  LERILDNFPYLIWIKDQKNRYRYVNKYFLTTFKKNERDIIGKTEVINCNNDYVLGS--EE 72

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           N + E    +   +   SVYK+         LP G   +           + +  ++T+ 
Sbjct: 73  NLITEVEFNEN--KKYLSVYKT--------ELPTGTKYNW---------MLAVARDVTLL 113

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP-GTHIR 481
               TK   + K     ++            G I  SN  F+ +               +
Sbjct: 114 KKEMTKRLKVQKRLESFLE------ISTDLWG-ILQSNYRFKDVSDNCIKTFGWTSEEFK 166

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQT 538
           N+ A      +  D   +   +  SF+ ++K+      L  +    ++E++   L   +T
Sbjct: 167 NLNAVN--LTHPDDRERILKKMDFSFNKDKKTFLLNRFLCKNGKYKLIEWTWCCLEEGKT 224

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS- 597
           +L         +       + E     + +K  F   VS+E ++PL  I+    LL    
Sbjct: 225 VLLTGRDITEKKQLEEEKRRLEEAIAIESLKTEFFATVSHEFKTPLNIILTTVQLLADKF 284

Query: 598 KLGSLNSKQS---QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K   L  +     +Y+  I  +S  LL LVN+++D+  +D GI KL+     +  ++  +
Sbjct: 285 KNDVLTEEVKINLKYINGIKQNSYRLLKLVNNLIDITQIDGGIYKLSLENCNIVSVIENI 344

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
             S++  ++E N  I   +  +      D  ++ +I   +LSNA+ ++++G  + +  + 
Sbjct: 345 VISVSKYINEKNRNIIFDTTKEEIILAIDCDKIERIILNLLSNAVKYTNRGGNIYVNLST 404

Query: 715 D--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
           D  N   I  +K++G  IPE    S+F RF  +      +  G G+GLSIV S I +HGG
Sbjct: 405 DINNNRVIVKIKDDGIGIPEKDIDSIFRRFKQSGDVFTRRCEGTGIGLSIVRSLIEMHGG 464

Query: 771 HVSISSSDEGVTTINCRIP 789
            + +++  +        +P
Sbjct: 465 KIKVNNEIKKGAEFIFFLP 483


>gi|229026129|ref|ZP_04182503.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272]
 gi|228735171|gb|EEL85792.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272]
          Length = 484

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 123/272 (45%), Gaps = 7/272 (2%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++
Sbjct: 209 RIKEGDLDFQI-PVTSHDEIGQLNQGFEEMR--KRLKESIEVQTQYEENRKELISNISHD 265

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   + 
Sbjct: 266 LKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVP 324

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             + TI LN  + E+ + +   + E  I + +          AD +++ ++ S ++ N++
Sbjct: 325 FQFETIELNVFMQELLEEMQMDLSEEGIEVHLQLHSSPLYVTADCEKINRVISNLIHNSV 384

Query: 700 DFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
            +  K    + +    DN   I  V +NGS I  D    +F RF            G GL
Sbjct: 385 KYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGL 444

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  +  HGG +   S     T+I   +
Sbjct: 445 GLAIAKQIVEEHGGEIWAESKLGEGTSIFFSL 476


>gi|229169400|ref|ZP_04297110.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621]
 gi|228614163|gb|EEK71278.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621]
          Length = 484

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 123/272 (45%), Gaps = 7/272 (2%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++
Sbjct: 209 RIKEGDLDFQI-PVTSYDEIGRLNQGFEEMR--KRLKESIEMQTQYEENRKELISNISHD 265

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   + 
Sbjct: 266 LKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVP 324

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             + TI LN  + E+ + +   + E  I + +          AD +++ ++ S ++ N++
Sbjct: 325 FQFETIELNVFMQELLEEMQMDLSEEGIEVYLQLQSSPLYVTADCEKINRVISNLIHNSV 384

Query: 700 DFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
            +  K    + +    DN   I  V +NGS I  D    +F RF            G GL
Sbjct: 385 KYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGL 444

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  +  HGG +   S     T+I   +
Sbjct: 445 GLAIAKQIVEEHGGEIWAESKLGEGTSIFFSL 476


>gi|229177807|ref|ZP_04305180.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W]
 gi|228605598|gb|EEK63046.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W]
          Length = 466

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 134/291 (46%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +         ++Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--AQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV+  +++HGG   I S  +  TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|206967910|ref|ZP_03228866.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|229068950|ref|ZP_04202244.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185]
 gi|229078584|ref|ZP_04211142.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2]
 gi|206736830|gb|EDZ53977.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|228704728|gb|EEL57156.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2]
 gi|228714234|gb|EEL66115.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185]
          Length = 466

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 134/291 (46%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +         ++Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--AQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV+  +++HGG   I S  +  TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|332669345|ref|YP_004452353.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
 gi|332338383|gb|AEE44966.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
          Length = 589

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/366 (24%), Positives = 147/366 (40%), Gaps = 26/366 (7%)

Query: 438 ETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN------IAATCSRY 490
             ID  ++  +      G +++ N     L    +  +     I +      + A     
Sbjct: 230 SIIDSATQQAIIATDATGLVEVFNAGAERLLGFAQGDVVGRMRITDLDAGAEVVAPTPGR 289

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII---PLPNAQTMLTFVNVTD 547
              S    L  +I+            T      S +   +     L    T+  +V V  
Sbjct: 290 APGSTAARLLESIVAPDGSGGFPRDRTYRRQDGSEVTVQLAVTRRLEVDGTVAGYVVVAT 349

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            V A+R              +K+ FV  VS+ELR+PLT+++G+ +LL       L  +Q 
Sbjct: 350 DVTADREAA----------RLKDEFVSLVSHELRTPLTSVLGYLELLLDG-TDELTEEQR 398

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            Y+  I  ++   L LV D+L  A VDAG   ++   I L D++     S+     +  +
Sbjct: 399 SYLTVIERNARRQLRLVGDLLLTAQVDAGTFAISPRPIDLADVVRGSATSLGPVAEQAGV 458

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-NGDFIFSVKNN 726
            +           VAD  RL Q+   ++SNA+ F+  G  V L+ A   +G     V++ 
Sbjct: 459 ALVTSVAPTP--VVADPGRLAQVVDNLVSNAVKFTPSGGEVHLEVAPTPDGGAGVLVRDT 516

Query: 727 GSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D  + +  RF     A R    GVGLGL+I  + ++ HGG + + S+    TT 
Sbjct: 517 GIGIAPDELQRLTTRFFRATSATRRAIPGVGLGLAIARAVVDAHGGRLDVESTLGEGTTF 576

Query: 785 NCRIPS 790
              +P+
Sbjct: 577 VVTLPA 582


>gi|323169009|gb|EFZ54687.1| sensor evgS domain protein [Shigella sonnei 53G]
          Length = 790

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 111 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 170

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 171 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 229

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 230 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 289

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 290 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 347

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            ++   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 348 YSTGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALICSS 407

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 408 TFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 467

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 468 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 527

Query: 789 PSK 791
           P +
Sbjct: 528 PVE 530


>gi|295091655|emb|CBK77762.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 360

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 118/291 (40%), Gaps = 9/291 (3%)

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
            II ++D   K L    + ++       I PL       T               +    
Sbjct: 71  KIIKTYDQPMKELAKAADKVAHGDFSVYIPPL------HTTNRHDYLDLMFLDFNKMVAE 124

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L   + ++  F+ +VS+E+++P+  I  +  LL+   L     +Q  Y   I +S+  L 
Sbjct: 125 LGSIETMRTDFIANVSHEIKTPIAAIQNYAQLLEKPDL--TKEEQENYTAAILSSTHRLS 182

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ +IL L  +++  +   Y    L   L +      T   E  I  +   + +     
Sbjct: 183 ALITNILRLNKLESQQITPKYEAYDLCRQLCDCALGFETIWEEKEIDFEADLEDR-AVIY 241

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD   +  +++ +LSNA  F+  G +V+L+   D+      V + G  I ++  K +F +
Sbjct: 242 ADESLMELVWNNLLSNAFKFTEPGGSVLLRQTSDSDCVTVEVSDTGCGISKETKKHIFEK 301

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F          G GLGL++    + + G  + + S +   T+   +IP KE
Sbjct: 302 FYQGDTSHATEGNGLGLALALRVLQMMGAAIEVESEEGKGTSFTVQIPVKE 352


>gi|160936268|ref|ZP_02083641.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441078|gb|EDP18802.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1122

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 166/384 (43%), Gaps = 24/384 (6%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTH 479
           V+ +   +     ++      ++   + +   + G I+ ++     +   E+   + G  
Sbjct: 340 VRANASREAVRRDRIFTLMTHYVPNVIVIADSESGAIEYASRNTEQVLGIED---AFGNA 396

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITS--------FDDERKSLQGTLELLSDSVLEYSII 531
           I +   +C    +     DL + +               R  +Q  + L  ++ L  S  
Sbjct: 397 IEDKFLSCISGSDRQAVLDLISRVRKGDCASGSLKLHFTRPDIQKDIVLSLNAYL-ISEQ 455

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
                   +T  ++T+  ++ R L E  E+  +A+  K++F+  +S+++R+PL  +IG T
Sbjct: 456 DSSQRFITVTLEDITEREQSRRRLEEALESEARANAAKSTFLASMSHDIRTPLNAVIGLT 515

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +L   S   S   K ++ ++ I+ SS +LL L+ND+LD++ +++G M+L  +   L + L
Sbjct: 516 NLALYSPEDS--KKVTECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWL 573

Query: 652 NEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + V     ++    +    V   +        D  RL Q+ + +L NA+ F+ K   + L
Sbjct: 574 SGVVTVTQSQTGVRSQHFDVNVWNITHELLCGDTVRLGQVLTNVLGNAVKFTPKDGEIYL 633

Query: 711 KAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVE 762
                         F+F V + G  +  +    +F  F  + +  ++   G GLG++I +
Sbjct: 634 DITEVPSQDPSFASFVFRVSDTGVGMSREYMGRIFEMFSRDQNSYKQGIQGTGLGMAITK 693

Query: 763 SFINLHGGHVSISSSDEGVTTINC 786
             ++L GG + + S  E  TT   
Sbjct: 694 RIVDLMGGTIRVESEPEKGTTFTI 717


>gi|149914194|ref|ZP_01902725.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149811713|gb|EDM71546.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 482

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 116/238 (48%), Gaps = 2/238 (0%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + +  +++  ++A EIK+ F+  +S+ELR+PLT+I    DL+ +  +  +       +E 
Sbjct: 212 QKIKLEHDRAKRAYEIKSQFLSTMSHELRTPLTSIKFSLDLMNSGCVAQVPDDLKPILEI 271

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              +S  L  L+N+ LDL  +++G M   + ++ ++ +++E   +I  + +   I ++  
Sbjct: 272 AVKNSNRLAELINETLDLQKIESGEMIFRFQSLDISRVVSESVDAIMAQANAEQIEVRKE 331

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                     D  R+ Q+   +LSNA+ FS  G  + ++  ++N     SV++ G+ IPE
Sbjct: 332 FPEDEVFINGDEARIQQVLGNLLSNALKFSEAGGVITVRVEQNNDRVRVSVQDTGTGIPE 391

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +    VF RF       +R   G GLG++I +  I  H G +   S     TT     
Sbjct: 392 NCEAQVFGRFSQVDSSDRRKVGGTGLGMNISKRIIERHNGTIHYKSRLGEGTTFFLEF 449


>gi|254975208|ref|ZP_05271680.1| putative two-component histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255092598|ref|ZP_05322076.1| putative two-component histidine kinase [Clostridium difficile CIP
           107932]
 gi|255314335|ref|ZP_05355918.1| putative two-component histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255517014|ref|ZP_05384690.1| putative two-component histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255650116|ref|ZP_05397018.1| putative two-component histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260683243|ref|YP_003214528.1| putative two-component histidine kinase [Clostridium difficile
           CD196]
 gi|260686839|ref|YP_003217972.1| putative two-component histidine kinase [Clostridium difficile
           R20291]
 gi|260209406|emb|CBA62877.1| putative two-component histidine kinase [Clostridium difficile
           CD196]
 gi|260212855|emb|CBE04062.1| putative two-component histidine kinase [Clostridium difficile
           R20291]
          Length = 618

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 165/393 (41%), Gaps = 31/393 (7%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDH-LSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GTI + +N+         YN+  K   + I+H + E +      G     N  F +L   
Sbjct: 216 GTIGIIDNIIYSGYSNRNYNS--KDLMKMIEHSIPENMFYKDVYGNYIGFNSGFLNLACM 273

Query: 470 EENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIIT-----SFDDERKSLQGTLELLS 522
            +  L       I    A  ++ +    G      ++T     S +DE K ++ T     
Sbjct: 274 NKEELLGKNSYKISEEEALINKIFESDKGVVENKKVVTFELNVSINDENKCIEITKRPFF 333

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           DS      I       + T  +++   R E  +          D+ +  F  ++S+ELR+
Sbjct: 334 DSYGSVIGI-------IGTARDISRRKRLEEEM----------DKTRMEFFANLSHELRT 376

Query: 583 PLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           P+  I     ++  K + L   N    + +  I  +   +L LVN+++D   + +G +  
Sbjct: 377 PINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQNGNRILRLVNNVIDFTKMQSGYLDF 436

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 +   + E+  S+A    +NNI++   ++ +  S + D ++L +I   +LSN + 
Sbjct: 437 KPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIEEFSMLFDSEKLERIILNLLSNGIK 496

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           ++ K   + +     +  F   + ++G  IP++    +FNRF    +    + +G G+GL
Sbjct: 497 YNKKDGKINIFLYVKDNVFNMKISDSGIGIPKEKIDKIFNRFEQIDNELSYRVKGSGIGL 556

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           S+V+S + LH G +S+ S     +     +P +
Sbjct: 557 SLVKSLVELHEGSISLKSQLGIGSEFIVSLPVR 589


>gi|168047043|ref|XP_001775981.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162672639|gb|EDQ59173.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 436

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 114/255 (44%), Gaps = 14/255 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +A   L    +    A   K+ F+ ++S+E+R+P+  I+    L+       L   Q
Sbjct: 15  ELRKANEELQTSQKRAEMASHAKSDFLANMSHEIRTPIHGIL---GLIALLLESELTVDQ 71

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +  +   + +LL+++N +LDLA ++AG +++   +  +  +++   + +  +  E  
Sbjct: 72  KESLASVKECADLLLHIINSVLDLAKIEAGRLEVERVSFNIRKMVSSTFRMLQARAQERG 131

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-------DNG 717
           +++    D  +    V D  +L Q    ++ NA+ F+ +GS  V L A R       +N 
Sbjct: 132 LKLFWEVDRNVPHSLVGDVGKLQQCLLNLVGNALKFTHEGSVSVHLSADRSTLVHAPENV 191

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              F V + G  I  D  K +F  F        R   G GLGL IV  F+ L GG + + 
Sbjct: 192 LIHFEVCDTGIGINPDKLKDMFKPFTQADASTSRLYGGTGLGLCIVHRFVELLGGTIWVE 251

Query: 776 SSDEGVTTINCRIPS 790
           S     +T    +P 
Sbjct: 252 SELGKGSTFQFCLPL 266


>gi|150006789|ref|YP_001301532.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935213|gb|ABR41910.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 571

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 170/386 (44%), Gaps = 26/386 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           G    F  +  ++  E + +TL  +          ++ ++E +     D +I  +N    
Sbjct: 202 GVAKSFNRMAERLT-EYRKSTLADIIQGKKYIEAIVNSITEPIIGLDRDRKILFANNEAL 260

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLS 522
           ++   +   +        I  + S     S   DL   ++       E+K          
Sbjct: 261 TILNLKRENV--------IGKSASEL---SLRNDLLRRLVRELIQPSEKKEPLKIYADNK 309

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +S  +   IP+  ++     V V D +     L +     ++ D  K +F+  +S+EL++
Sbjct: 310 ESYFQVQYIPIRVSENGEAEVYVGDVI-----LLKNITEFKELDSAKTTFISTISHELKT 364

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P++ I+    LL+ +++G++N +Q    E I  SS  LL + +++L +  V+AG ++LN 
Sbjct: 365 PISAIMMSLKLLEDARVGAMNDEQKALAESIKESSNRLLEITSELLKMTQVEAGKLQLNP 424

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                 +L+    ++   +    N  I+V    K+     D +++  + + +LSNA+ ++
Sbjct: 425 KITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSNAIHYT 484

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +   +I+ A + +      V++ G  I     +S+F+R+       + +G GLGL+I +
Sbjct: 485 PENGRIIIGARQQDHSVEIYVQDFGKGIDPRYHQSIFDRYFRVPG-TKVQGSGLGLAISK 543

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
            F+  HGG +S+ S+    +T   + 
Sbjct: 544 DFVEAHGGTLSVDSAVGKGSTFVIKF 569


>gi|42524991|ref|NP_970371.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39577202|emb|CAE81025.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 688

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 132/285 (46%), Gaps = 6/285 (2%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALTEKNEALRKADEI 568
           E+  L G L L++ ++  +S   +   Q++  T           + L E+ + L  A   
Sbjct: 239 EKNQLFGLLLLMNKALRHFSAEEVRFVQSLVNTLSIAMSRNALHKELEERIQQLHTAHRK 298

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           KN F+  +S+ELR+PL  I G  DLLK S     + +    ++ I  +    + LV+D L
Sbjct: 299 KNDFLATLSHELRTPLNIIKGGLDLLKGS--DPKSREYHDALDAIERNLNHEIQLVSDTL 356

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           +++ +  G  KLN   +V+ +L+  V +S+ +  H  NI  ++         V D  R  
Sbjct: 357 EISRITTGKTKLNLKKVVVQELIQSVMESLESAAHAKNISAQLTCSEAATQAVVDPDRFR 416

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH- 747
           QI   +LSN++ F+  G  + +        F  SV++ G  I  +    VF +F      
Sbjct: 417 QILWNLLSNSIKFTPPGGRLHVTCETHESQFSVSVQDTGQGIESENLPYVFEKFWQEDSG 476

Query: 748 -RGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
              +R G+GLGLSI +    LHGG + + S   +  TT   ++P 
Sbjct: 477 MNRKRMGLGLGLSIAKHMTELHGGSIEVQSPGKDQGTTFRIQLPL 521


>gi|319901471|ref|YP_004161199.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            helcogenes P 36-108]
 gi|319416502|gb|ADV43613.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            helcogenes P 36-108]
          Length = 1345

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 121/276 (43%), Gaps = 8/276 (2%)

Query: 517  TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            T   LS   L + ++     +      ++   +R ER      E   +  ++K  F  ++
Sbjct: 781  TWWALSLFALSFVLLVFGIVRFFWLRKSMQAEIRMERL---DKEKREEISQMKIRFYVNI 837

Query: 577  SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            S+ELR+PLT I+     L +   G    +Q  YV+    ++  LL+LVN ++D    + G
Sbjct: 838  SHELRTPLTLIVAPLQELLSRISGHWEHEQLLYVQ---RNTNRLLHLVNQLMDFRRAELG 894

Query: 637  IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            I +L          +     +  +     +I     ++ +  + + D   L  I + +LS
Sbjct: 895  IFELRAVYSNAYKRVLGCFMNYESLSKRKDIDYNFYTELQDENVLFDENYLDLIVNNLLS 954

Query: 697  NAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGL 756
            NA  ++  G ++ +K   ++ D +  V + G  IP +  + +F RF    +    +G G+
Sbjct: 955  NAFKYTEIGESITVKLYVEDNDLVLQVIDTGIGIPPEKQEKIFERFYQVENG--HKGSGI 1012

Query: 757  GLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLS+V+  + LH G + + S     +T    +P  E
Sbjct: 1013 GLSLVQRLVELHHGRIVLQSEVGKGSTFTINLPQDE 1048


>gi|312877756|ref|ZP_07737708.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795475|gb|EFR11852.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 566

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 150/407 (36%), Gaps = 68/407 (16%)

Query: 400 LHVIVTSNPRGGTIWM-FENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           + + ++S    G +   F+ + T      ++     +     + ++S+GV        I 
Sbjct: 210 IRIEISSQDEIGKLASAFKTMATNVKKYISELEFEKQKLERILQNMSDGVLAVNSKNEII 269

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N + +   K             ++        ++ D                  +   
Sbjct: 270 HINESAKRFLKG------------DVERFLEHVQSDKDWC----------------VTQR 301

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +  +    LE S     ++      + +   +  +  L          D ++  FV  VS
Sbjct: 302 IYEVDGWTLEVSTASFIDSYQGTGTIFILHDITQQAKL----------DRMRKQFVADVS 351

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+T I  +++ L      ++   + +++  I      +  L++D+L L+ +D+G 
Sbjct: 352 HELRTPITTIKTYSETLLDVDDETV---KKKFLNVIIKECDRMTRLISDLLYLSRLDSGE 408

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             L    + +++L+  V + +     + N ++   +   +    ADR RL Q+   +++N
Sbjct: 409 NILKIEEVNISELVRFVCEKMRIHAKKKNQKLLCSTQENV-VIEADRDRLEQVLINLINN 467

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A+ +  +G  + +   +D      +VK+NG  IP++    +F RF               
Sbjct: 468 AVVYVQEGGQIEVGLEKDEEHVRITVKDNGPGIPQEDLPRIFERFYRVDK---------- 517

Query: 758 LS-------------IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +             I +  +  HGG + + S +   TT    +P K
Sbjct: 518 -ARSRSLGGSGLGLSIADEIVKAHGGKILVESKEGVGTTFTVVLPLK 563


>gi|317055320|ref|YP_004103787.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315447589|gb|ADU21153.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 475

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             ++ +    L +    +RK  +++   + ++S++LR+PLT +  + ++++    G    
Sbjct: 231 YKETEKLAEVLNDAKNEIRKVSDLRKDLIANISHDLRTPLTMVKAYAEMIRD-LSGDNPV 289

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K++++V+ I   +  L NLVN++L+L+ +++G M+LN     + D +N+        + +
Sbjct: 290 KRAEHVQVIIDEADRLSNLVNNLLELSKLESGNMELNRRKFSIVDKINDYMTRYQLVIEQ 349

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           N   +K   D       AD  +L Q+    ++NA++++     + +K           V 
Sbjct: 350 NGYDMKYEPDED-RQVDADPDKLDQVIYNFINNAINYTGDNKVIRIKQINTEKSVRIEVS 408

Query: 725 NNGSSIPEDMCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           +NG  I +++   VF+R+  +A  +    G GLGL+I +  +  H     + S +   +T
Sbjct: 409 DNGKGIAKELLPKVFDRYYRDAKIKRDVVGTGLGLAICKEILKCHDFPFGVRSEEGKGST 468

Query: 784 INCRIPS 790
               IP 
Sbjct: 469 FWFEIPL 475


>gi|323692079|ref|ZP_08106326.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503879|gb|EGB19694.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 466

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  R + E  E L +  +I+  F  + S+EL++P+T+I G+ +LL++    +       +
Sbjct: 223 KMSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGMALN-EETTHDF 281

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I   +  + +LV+DIL ++ +++   K    TI + DLL E   S+AT+  E  + I
Sbjct: 282 LKRIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVI 341

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +    +  AD +++ ++   ++ NA+ +++    + ++A R+N DF+ +V+++G  
Sbjct: 342 HKQFES--FAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLTVRDSGVG 399

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    +F RF         ++ G GLGL+IV+  +N + G V + S     +T   R
Sbjct: 400 IPQESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVR 459

Query: 788 IP 789
           +P
Sbjct: 460 LP 461


>gi|295087713|emb|CBK69236.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase. [Bacteroides
           xylanisolvens XB1A]
          Length = 754

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 135/270 (50%), Gaps = 10/270 (3%)

Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Y+   LP  +  T    +N+ D    E  L      L +  E+K SF+ ++S+E+R+P
Sbjct: 488 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEELEAAR-LLAEKAELKQSFLANMSHEIRTP 546

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +I+GF ++L     G  ++++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++ 
Sbjct: 547 LNSIVGFANILALED-GLSSAEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 605

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + +L++++  +    +  + +      D        DR+RL+Q+ +  L+NA  F+ 
Sbjct: 606 RCKVRELIDDIYMTHQVLIAPH-LEFLKEVDDTPLEINVDRERLIQVLTNFLNNAGKFTE 664

Query: 704 KGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
            G  + L  +   D G+    V++ G  IP +  + +F+RF       Q  G GLGLSI 
Sbjct: 665 TG-YIKLGYSYLPDEGNVQIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSIC 721

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  I   GG + + S     +     +P +
Sbjct: 722 QVIIEKLGGKIELKSEVGKGSRFTVILPCR 751


>gi|332710709|ref|ZP_08430650.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332350486|gb|EGJ30085.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 480

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 10/284 (3%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           ++SLQ  L+L+S      S   L + Q +      T+     +   E    L +A E + 
Sbjct: 203 KRSLQ-PLQLMSQLTESISADDLGDVQ-IQLDNAPTEVRELAQTFDEMLVRLNEALENQR 260

Query: 571 SFVQHVSYELRSPLTNIIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            FV +VS+ELR+PLT + G+    L+     +L+  Q + +E  S+ +   + ++ D+LD
Sbjct: 261 QFVSNVSHELRTPLTLVSGYVQSTLRRGA--NLSPPQREALEIASSEADRTVQMLQDLLD 318

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
           LA  D+G +  N  + VL++L+ EV + +A +  +  I+++ I  G       D  RL Q
Sbjct: 319 LARADSGHIHFNLESFVLDELVEEVAE-MARQYTKRVIKVECIKPG--IWVKGDINRLKQ 375

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG 749
           +   ++ NA+ +SS    V +K  + +G     V + G  IP      +F+RF       
Sbjct: 376 VLLNLIDNAVKYSSVDKPVTVKLTQVDGRGRIEVCDRGIGIPLKQQARIFDRFYRVDETR 435

Query: 750 QR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            R   G GLGLSIV++ +   GG V + S     +     +P +
Sbjct: 436 TRSTGGAGLGLSIVKTLVEGMGGSVKVRSQLNKGSIFTVCLPLQ 479


>gi|317151758|ref|YP_004119806.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942009|gb|ADU61060.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 432

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 158/393 (40%), Gaps = 29/393 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
           +L  + + L +     +D +S+ + V   D G I   + A  S+       L        
Sbjct: 34  ELRNRLDELER-FRALLDRVSDAIFVVNADTGLIVDFSGATLSMLDCGRESLLDMPFKGL 92

Query: 483 IAATCSRYYN-------ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
           +    +RY +       E+   +       + D     ++ TL ++    +  +I+   +
Sbjct: 93  LPEHIARYADNLFNISTETLSLETEFRHPATPDRLPVPVEMTLRIVEHREVRQAIVVARD 152

Query: 536 --AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
              +              E  + E+   L +A++ K  F+  VS+ELR+PLT+IIGF  +
Sbjct: 153 ISERKRSEESMKKSHDELEVRVRERTRELARANKAKTEFLSIVSHELRTPLTSIIGFAKI 212

Query: 594 LK---------------TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           ++                 KL     +  + ++ I A    L  L+ND+LDLA ++A  +
Sbjct: 213 IRKKLAERVFPAVDRDRDPKLCKEMDRIGKNIDIIEAEGERLTALINDVLDLAKLEANKV 272

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
           +     +   + L     S +     + +         L   + DR RL+Q+   + SNA
Sbjct: 273 EYRMEPLAPAEFLRPAMDSSSALFQASEVLFLNEVGPDLPQVMGDRHRLIQVMVNLFSNA 332

Query: 699 MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGL 756
             F+ +GS V  +A         SV + G+ IP++   S+F++F+        R  G GL
Sbjct: 333 AKFTRQGS-VTCRAELVGAHLRVSVVDTGAGIPQEQQTSIFDKFIQGQESLTDRPTGTGL 391

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GL I    I  H GH+ + S+    +     +P
Sbjct: 392 GLPICRQIIKDHQGHLWVESAPGQGSRFLFTLP 424


>gi|229144601|ref|ZP_04273003.1| hypothetical protein bcere0012_17610 [Bacillus cereus BDRD-ST24]
 gi|228638841|gb|EEK95269.1| hypothetical protein bcere0012_17610 [Bacillus cereus BDRD-ST24]
          Length = 351

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 228

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+ ++           ++++G  I E
Sbjct: 229 -DLEKVYVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    R+P+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|118593594|ref|ZP_01550971.1| PAS domain protein [Stappia aggregata IAM 12614]
 gi|118433812|gb|EAV40472.1| PAS domain protein [Stappia aggregata IAM 12614]
          Length = 1563

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/518 (18%), Positives = 203/518 (39%), Gaps = 61/518 (11%)

Query: 311  ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
            +L  L + IAI   +R + + N++ + +         +     E L F+  A +LP++  
Sbjct: 1065 LLDRLPIGIAI-AHDREVLYANKALLRMLGYRSIAALSEAGGLEAL-FIDDAEELPDEG- 1121

Query: 371  WKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN--PRGGTIWMFENLTVQV----- 423
                                   L +G  L+V    +  P  G+  +  ++T +      
Sbjct: 1122 -----------MDGEVDETMKMRLSDGGVLNVDAHMHSVPWNGSRGLMISITERKVKPAP 1170

Query: 424  ------------DLETKY---NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
                        ++  +       +      ++  ++GV V   +G I   N +  +L+ 
Sbjct: 1171 AAAAPSSPNFFAEVRAELDSARNQIAEMDTILETATDGVLVLDQNGTILKVNGSAEALFS 1230

Query: 469  TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
               + +  G  +    A  S          L    + S  ++ + + G +       L  
Sbjct: 1231 ANRSDM-IGAPLTEFLAPESHRAAADYLDGLSRNGVASILNDGREVLGKVPTGGLIPLFM 1289

Query: 529  SIIPL----PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +I  +     + +      ++T    AE  LT+       A   K+ F+  +S+E+R+PL
Sbjct: 1290 TIGRISGTKDDVKYCAVLRDITQWKTAEEELTQAKRQAENASSQKSDFLAKISHEIRTPL 1349

Query: 585  TNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
              IIGF++++   + G + N +   Y++ I  S + +++L+ND+LDL+ ++AG + L +S
Sbjct: 1350 NAIIGFSEVMMEERFGPIGNDRYKDYLKDIRTSGSHIMSLINDLLDLSKIEAGKLDLKFS 1409

Query: 644  TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
             +  ND++NE    +  + +   + I+      +   VAD + L QI   +LSNA+ ++ 
Sbjct: 1410 AVSTNDVINECVALMQPQANRERVIIRASLPESVPDVVADPRSLRQIVLNLLSNAIKYNK 1469

Query: 704  KGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---------RRG 753
             G  VIL  A + NG+    V++ G+ +      +    F       +            
Sbjct: 1470 SGGQVILSTALESNGEVALRVRDTGTGMTSKQLAAALEPFRQLHTSSRGGGTGLGLPLT- 1528

Query: 754  VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                    ++ +  +     I S+ +  T +    P++
Sbjct: 1529 --------KALVEANRASFHIDSTPDQGTLVEIIFPTQ 1558


>gi|229188857|ref|ZP_04315890.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876]
 gi|228594562|gb|EEK52348.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876]
          Length = 463

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 113/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+   SK  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADI--ASKES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + + ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TPSEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 IYKERYIKVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSHINISVTEEHKSIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITIEDEGEGIPPEDLPHIFDRFYRVDKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DYGSCFIVSLPS 455


>gi|323139437|ref|ZP_08074486.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395308|gb|EFX97860.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 638

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 94/516 (18%), Positives = 180/516 (34%), Gaps = 39/516 (7%)

Query: 293 IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
           +D ++ +     L      +  L   IA+ D +  +   N S+        A      S 
Sbjct: 6   VDCAESLDSGSFLRGA---IDALPHQIAVLDHDGVVIAVNESWKRF-----AHENGASSR 57

Query: 353 DELL--EFLRSANKLPEQLNWK------------TWKENIFSVYKSSETHKDTWHLPNGQ 398
              +  ++L +     E   +               ++     Y       + W L    
Sbjct: 58  AAFVGADYLHNCRAAAETDIYALRTLVGFGDILAGERDQFSIEYPCRAPGNERWFL---- 113

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKL 458
            +H    + P    +     +T +  +E       +           G            
Sbjct: 114 -MHAARVNQPPAAVVVSHTEITDRKRMEEALRRGQEDFALAQQVGQIGWWRLETKKNELT 172

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            +   R ++  E+           +     R                  +    +     
Sbjct: 173 WSDETRRIFDAEQVAPLTYDDFIAMVHPDDRAIVNGRWDAALNGEAYDVEHRIFAGGCVK 232

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
            +   + LE+       A       ++T+   AE AL +        D  K+ F+  +++
Sbjct: 233 WVREKAYLEFDAAGAV-ASAFGIVQDITERKAAEAALRDA-------DRRKDEFLATLAH 284

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGI 637
           ELR+PLT I     LL+ +        ++ +  E +    + L+ LV+D+L+++ +  G 
Sbjct: 285 ELRNPLTPIRNAVHLLRLNSETPGRENRNPRLFEMVERQVSHLVRLVDDLLEVSRITRGK 344

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           ++L    + L  LL  V  +    +      +++          AD  RL QIF+ +L N
Sbjct: 345 IELRKERLDLTALLRHVVDASQPAIQRGGHELRMDLPSAPLILDADPVRLSQIFTNLLDN 404

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVG 755
           A  ++  G T+ L AAR       SV++NG  IP ++   VF+ F          + G+G
Sbjct: 405 AAKYTEAGGTITLTAARQGAAATISVRDNGVGIPAELLPRVFDIFTQVDRSLGRAQGGLG 464

Query: 756 LGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
           +GL++V S + +HGG V   S+     +T   R+P 
Sbjct: 465 IGLALVRSLVEMHGGSVEADSAGLGRGSTFVVRLPL 500



 Score = 39.5 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/291 (10%), Positives = 79/291 (27%), Gaps = 40/291 (13%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            + C +  +  S  +   D+L   +   D  G ++  N S+K+     G   + A   + 
Sbjct: 5   KVDCAESLDSGSFLRGAIDALPHQIAVLDHDGVVIAVNESWKRFAHENGASSRAAFVGAD 64

Query: 242 KLFKEEIKKRM------------ISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA 289
            L                        +     F         GN + + +     +   A
Sbjct: 65  YLHNCRAAAETDIYALRTLVGFGDILAGERDQFSIEYPCRAPGNERWFLMHAARVNQPPA 124

Query: 290 GIAI---DVSKEITVNDQLTHTYEILHNLTVAIAIFD-----QNRYLQFHNRSFVELWEI 341
            + +   +++    + + L    E    L   +           +     +     +++ 
Sbjct: 125 AVVVSHTEITDRKRMEEALRRGQEDFA-LAQQVGQIGWWRLETKKNELTWSDETRRIFDA 183

Query: 342 DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL-PNGQTL 400
           +        + D+ +  +   ++      W            + E +     +   G   
Sbjct: 184 EQ---VAPLTYDDFIAMVHPDDRAIVNGRW--------DAALNGEAYDVEHRIFAGGCVK 232

Query: 401 HVIVTSNPR----GGTIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLS 444
            V   +       G     F   +++T +   E       + + E +  L+
Sbjct: 233 WVREKAYLEFDAAGAVASAFGIVQDITERKAAEAALRDADRRKDEFLATLA 283


>gi|229019900|ref|ZP_04176697.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273]
 gi|228741390|gb|EEL91593.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273]
          Length = 484

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 123/272 (45%), Gaps = 7/272 (2%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++
Sbjct: 209 RIKEGDLDFQI-PVTSHDEIGQLNQGFEEMR--KRLRESIEVQTQYEENRKELISNISHD 265

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   + 
Sbjct: 266 LKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVP 324

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             + TI LN  + E+ + +   + E  I + +          AD +++ ++ S ++ N++
Sbjct: 325 FQFETIELNVFMQELLEEMQMDLSEEGIEVHLQLHSSPLYVTADCEKINRVISNLIHNSV 384

Query: 700 DFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
            +  K    + +    DN   I  V +NGS I  D    +F RF            G GL
Sbjct: 385 KYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGL 444

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  +  HGG +   S     T+I   +
Sbjct: 445 GLAIAKQIVEEHGGEIWAESKLGEGTSIFFSL 476


>gi|254420242|ref|ZP_05033966.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196186419|gb|EDX81395.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 549

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 1/254 (0%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +    + T     E  L             K  F+ ++S+ELR+PL  +IGF D+++ 
Sbjct: 275 RLIAQAFDGTAQFARELGLESARAEAEAQSAGKTRFLANMSHELRTPLNAVIGFADIMRQ 334

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L  + + Y + I  +   LL+L+ND+LDL+ ++A   +L   ++   D ++    
Sbjct: 335 RLFGPLPDRYAGYADSIHQAGGHLLDLINDVLDLSKIEAERYELALESLDARDPVSAAVA 394

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  +  +  + +  +      +  AD + L Q+   +LSNA+ F+  G +V L      
Sbjct: 395 LVRVQADDKGVDLAPVLPSIPLTVQADARALKQMALNLLSNAVKFTPTGGSVTLTLDGVG 454

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSIS 775
                 V + G  I  +  + V   F       Q+ +G GLGLS+V S   LHGG +SI 
Sbjct: 455 PYLELVVSDTGVGIAPEDLRRVGRPFEQAGGADQKAQGTGLGLSLVRSLTELHGGRMSID 514

Query: 776 SSDEGVTTINCRIP 789
           S+    T +  R+P
Sbjct: 515 STLGEGTAVMVRLP 528


>gi|150866454|ref|XP_001386063.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054]
 gi|149387710|gb|ABN68034.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054]
          Length = 1118

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 13/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+PL  IIG T L   ++   L   Q + +  +   + 
Sbjct: 481 REAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLSLDTE---LTQYQREMLSIVHNLAN 537

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      L   +    +++A K  E ++ +    D    
Sbjct: 538 SLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALKTLAVKAIEKSLDLTYQCDSSFP 597

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----RDNGD---FIFSVKNNGSSI 730
            + + D  RL Q+   +  NA+ F+ +G   +         D+ +       V + G  I
Sbjct: 598 DNLIGDSFRLRQVILNLAGNAIKFTKQGKVSVSVKKSSKFTDDSEKLLLEVCVSDTGIGI 657

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +D    +F+ F        R   G GLGLSI +  I+L GG + ++S     +     
Sbjct: 658 EKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIHLMGGEIWVTSEYGSGSNFYFT 716


>gi|114571161|ref|YP_757841.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341623|gb|ABI66903.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 554

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           RAL     A R+AD  K++F+ ++S+E+R+P+  ++G  DL +    G L+++    V  
Sbjct: 157 RALERMLVAARQADAAKSAFLANMSHEIRTPMNGVLGLLDLARNGPDGRLDAE---GVVT 213

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
             AS+T L+ ++NDILD++ +D G + +      L  L  EV      ++   +I + + 
Sbjct: 214 AHASATALVTVLNDILDVSKLDQGAIVIREEPCDLRGLCEEVISLFGVQVSGRDIALVLD 273

Query: 673 SDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---NGDFIFSVKNNGS 728
            D  L +  A D  RL Q+   ++ NA+ F+ +G  V L    +    G   F V + G 
Sbjct: 274 YDDSLQNCYALDAVRLRQVMWNLVGNAVKFTERGE-VRLAVRPEPGGGGGLQFEVSDTGI 332

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            +  +  + +F+RF        R   G GLGL+I      L GG +++ S     +  + 
Sbjct: 333 GLSAEARERIFDRFAQADDTTTRDFGGTGLGLTICRELTRLMGGELAVESEAGAGSRFHF 392

Query: 787 RI 788
           R+
Sbjct: 393 RL 394


>gi|75907015|ref|YP_321311.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700740|gb|ABA20416.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 476

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 146/351 (41%), Gaps = 12/351 (3%)

Query: 444 SEGVA--VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
           S+GVA  +     R+ ++ P  R         L     +       +R      G     
Sbjct: 129 SQGVAKGILSRKDRLYVAKPIVR--NGQFLGVLRMSITLEQFQRQFARVIVSVLGSLALT 186

Query: 502 AIITSFDDER--KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            ++ +    R  +SL   +E++ +  +        +    LT     +  +    L   +
Sbjct: 187 IVLCALISTRFARSLSRPIEIMGNFAIRLGSGQFGDT---LTIHENNELDQLAVELNRMS 243

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L   D+ + +F+ +VS+ELR+P++N+    D LK          + ++ + I   +  
Sbjct: 244 ERLASLDQERRTFLANVSHELRTPISNVQVTVDALKGGAYEE-PQLRDRFFQTIENETKR 302

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L++D+LDL  ++AG+ +L    + L+ L+N    ++  +M    + ++V     L  
Sbjct: 303 LSRLIHDLLDLGRLEAGVSQLEQQNLSLSGLINRAVNAMEPRMQAAGVSLQVKVSDLL-- 360

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
              D +RLLQ    +L NA+  S   S V++    D    +  +++ G  I E     +F
Sbjct: 361 IQGDPERLLQAILNLLDNAIKHSQPDSQVLISGYSDGKQAVIKIQDQGKGIREQDLPRIF 420

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            +F +       +  GLGL+I +  I  H G ++ +S+     T    +P 
Sbjct: 421 EQFYTTDPSRTGKSSGLGLAITKRIIEAHQGRITANSTAHQGATFTIYLPL 471


>gi|52144661|ref|YP_082167.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51978130|gb|AAU19680.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 462

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSHINISVTEEHKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 ITIEDEGEGIPSEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|328545129|ref|YP_004305238.1| PAS domain protein [polymorphum gilvum SL003B-26A1]
 gi|326414871|gb|ADZ71934.1| PAS domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 1231

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/513 (20%), Positives = 202/513 (39%), Gaps = 54/513 (10%)

Query: 310  EILHNLTVAIAIFDQNRYLQFHNRSFVELWE------------IDLAFLATNPSNDELLE 357
             +L  L + IAI  ++R + + N + + L              ++  F+      D+   
Sbjct: 737  RLLDRLPIGIAIV-RDREVLYANETLLALLGYGSIEALSEAGGLEAVFVEP----DDHWP 791

Query: 358  FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE 417
                 + L E L  +     +  V   +  H   W+   G  + V     P         
Sbjct: 792  DTDGDDTLDETLKVRVAGGGLRRV--DARMHAVPWNGGRGLMISVTERQTPPEARPT--- 846

Query: 418  NLTVQVDLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
              +   + E       +   E    ++  ++GV V    G I  +N +  +L+      +
Sbjct: 847  --SELGEREAALKAAEERIAEMDTILETATDGVLVLDRHGTIVKANGSAEALFGASRADM 904

Query: 475  SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              G  +    A  S          L    + S  ++ + + G +       L  +I  + 
Sbjct: 905  -IGAPLTAYLAPESHRSATDYLDGLARNGVASVLNDGREVIGQVASGGLIPLFMTIGRIG 963

Query: 535  NAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
            N    + F     ++T    AE  LTE       A   K+ F+  +S+E+R+PL  IIGF
Sbjct: 964  NGGEAMKFCAVLRDITQWKAAEEELTEAKRQAETASSQKSDFLAKISHEIRTPLNAIIGF 1023

Query: 591  TDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
            ++++   + G++ N +  +Y++ I  S   +++LVND+LDL+ ++AG + L++S +  ND
Sbjct: 1024 SEVMMEERFGAIGNERYKEYLKDIRTSGAHIMSLVNDLLDLSKIEAGKLDLSFSAVSAND 1083

Query: 650  LLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
            ++ E    +  + +   + I+      + S VAD + L QI   +LSNA+ F+  G  VI
Sbjct: 1084 VVRECVALMQPQANRERVIIRASLPATVPSVVADPRSLRQIVLNLLSNAIKFNRSGGQVI 1143

Query: 710  LKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI-------- 760
            +  A + NG+ +  V++ G+ +      +    F                 I        
Sbjct: 1144 VSTALEPNGEVVLRVRDTGTGMNAKDLAAALEPFRQVHTAR----------IGGGTGLGL 1193

Query: 761  --VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               ++ +  +     I S+ E  T +    PS+
Sbjct: 1194 PLTKALVEANRAVFHIDSTPEQGTLVEITFPSQ 1226


>gi|312951634|ref|ZP_07770529.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|310630351|gb|EFQ13634.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|315152345|gb|EFT96361.1| PAS domain S-box [Enterococcus faecalis TX0031]
 gi|315158212|gb|EFU02229.1| PAS domain S-box [Enterococcus faecalis TX0312]
 gi|323480863|gb|ADX80302.1| two-component sensor histidine kinase, PhoK [Enterococcus faecalis
           62]
          Length = 591

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PKVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S K   + +  A
Sbjct: 449 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQKNGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|284172996|ref|YP_003406377.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284017756|gb|ADB63704.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 361

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 144/359 (40%), Gaps = 22/359 (6%)

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
             +D L    A+   DG I  +N A++   +  +  L P T I     T +R        
Sbjct: 12  AAVDTLPINFAILDDDGTILYTNRAWQEFGEANDIELRPDT-IGTNYLTITRQAETETAQ 70

Query: 498 DLFAAIITSFDDERKSLQGTLELLS---DSVLEYSIIPLPNAQTMLT---FVNVTDSVRA 551
              A +      ERK  +      S                           ++TD  + 
Sbjct: 71  TAAAGLSEILTGERKLFEFEYPCHSPNKQRWFLMRAASFTTGDQRYVAVAHFDITDRYQY 130

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           +R L E NE L+        F    S++LR PL  +  +  LL++     L+    +++E
Sbjct: 131 QRRLEESNERLQ-------QFAYVASHDLREPLRMVTSYLQLLESRYSDELDEDAKEFIE 183

Query: 612 YISASSTILLNLVNDILDLATVD-AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +    +  +  ++  +L  + V+  G    ++ ++ L  +L++V   ++ ++ E    I 
Sbjct: 184 FAVDGAERMEAMIEGLLTYSRVETQGK---SFESVDLEAVLDDVLTDLSIRIDETGAEIT 240

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSS 729
                 L +   D  +L Q+F  +L NA+ +S +    V + A RD  +++ SV + G  
Sbjct: 241 ---AEPLPTVSGDASQLRQLFQNLLENALQYSGEQEPRVTISATRDEDEWMISVSDEGIG 297

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           I ++    VF  F       + +G G+GL++    +  HGG + + S  E  +T +  +
Sbjct: 298 IDQEDVDRVFEVFQRLHSHEEYKGTGIGLALCRRIVERHGGEIWVDSEPEEGSTFSFTL 356



 Score = 39.5 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 5/131 (3%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           +  L +  AI D +  + + NR++ E  E +   L  +      L   R A     Q   
Sbjct: 14  VDTLPINFAILDDDGTILYTNRAWQEFGEANDIELRPDTIGTNYLTITRQAETETAQTAA 73

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV----TSNPRGGTIWMFENLTVQVDLET 427
               E +    +     +   H PN Q   ++     T+  +        ++T +   + 
Sbjct: 74  AGLSEILTG-ERKLFEFEYPCHSPNKQRWFLMRAASFTTGDQRYVAVAHFDITDRYQYQR 132

Query: 428 KYNTLVKVQGE 438
           +     +   +
Sbjct: 133 RLEESNERLQQ 143


>gi|228964357|ref|ZP_04125474.1| hypothetical protein bthur0004_12080 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795341|gb|EEM42831.1| hypothetical protein bthur0004_12080 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 466

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++HGG   I S  +  TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHGGQWKIKSEKDKGTTVIIKL 457


>gi|167638126|ref|ZP_02396404.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|177651128|ref|ZP_02933959.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|254736781|ref|ZP_05194487.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|167513943|gb|EDR89311.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|172082954|gb|EDT68016.1| sensor histidine kinase [Bacillus anthracis str. A0174]
          Length = 484

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 124/271 (45%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++   P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFH-TPVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  HGG++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHGGNIWAESELGEGTSIFFSL 476


>gi|47568102|ref|ZP_00238807.1| sensory box histidine kinase PhoR, putative [Bacillus cereus G9241]
 gi|47555256|gb|EAL13602.1| sensory box histidine kinase PhoR, putative [Bacillus cereus G9241]
          Length = 463

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+   SK  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADI--ASKEA 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +      KL     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYITVSFSCPPKLL-VNLDEQRFEQVVVNILNNAYRHSKEHSHINISVTEEHKHIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 IAIEDEGEGIPLEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
              +     +PS
Sbjct: 444 NHGSCFIISLPS 455


>gi|239907909|ref|YP_002954650.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797775|dbj|BAH76764.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1126

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 152/348 (43%), Gaps = 13/348 (3%)

Query: 450 FGPDGRIKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
            G DG +   +PA   +     E  +     I  I         E+   ++F+      D
Sbjct: 349 VGSDGNLLWVSPACERVTGYRPEEFIQNQQLIYEIVQPEDLSKLETHCKNIFSENNQQCD 408

Query: 509 DERKSLQGT--LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            E K       L  +     +  +    +    +  +++T+    E +L +      ++ 
Sbjct: 409 IEFKIFNRANKLVWIHHHCQQIILSDGSSLGRFVRNLDITERKSFEFSLIQSRTQALESA 468

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
            +K+ F+ ++S+E+R+PL  IIG T LL  S   +L  +Q+++ E I +S   LL+L++D
Sbjct: 469 NLKSEFLANMSHEIRTPLNGIIGMTGLLLDS---NLTYEQTRFAEAIRSSGDSLLDLIDD 525

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQ 685
           ILD + ++AG ++       L +LL++   ++A + +   + +    +  +      D  
Sbjct: 526 ILDFSKIEAGKIEFESFDFNLINLLDDFDDTMALRAYGRGLELLCKVEPNVPKWLRGDPG 585

Query: 686 RLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNR 741
           RL QI + +  NA+ F+  G  T+ +   +D        FSV + G  I     +++FN+
Sbjct: 586 RLRQILTNLTGNAIKFTHAGEITLRVTLVKDGTTNCILRFSVCDTGIGISPVNTRNLFNK 645

Query: 742 FVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           F        R   G GLGL+I +    L GG + ++S +   +     
Sbjct: 646 FTQADTSTTRKYGGTGLGLAISKQLTELMGGEIGVTSQESQGSEFWFT 693


>gi|229543410|ref|ZP_04432470.1| histidine kinase [Bacillus coagulans 36D1]
 gi|229327830|gb|EEN93505.1| histidine kinase [Bacillus coagulans 36D1]
          Length = 465

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 7/248 (2%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            +  +  +   ++           E ++ F+  +S+ELR+PLT I G+ D+ + +     
Sbjct: 210 YSKDELGQLAESIRTLAREWNHLREERSEFLASISHELRTPLTYIKGYADIARKNNCADN 269

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            +    Y+  I   +  L +++ ++ DLA +D    ++      L  +L +++  ++   
Sbjct: 270 ET----YLNIIYEEAAKLSDMIQNLFDLAKMDRNSFQIQKQNFPLFQMLKQIEHKLSPAF 325

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
               I + V     +   +AD  R  Q+   +L NA  +S   + + L   + +G +   
Sbjct: 326 QNKRIILTVKCHPSI-QLIADPVRFEQVVINLLDNAYKYSEPHTNIFLTVKKADGAWKLI 384

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V+++G  IPE+    +F RF        R   G GLGL+IV+  +  H  H+   S +  
Sbjct: 385 VQDHGKGIPEEDLPYIFERFYRVDKSRSRSFGGTGLGLAIVKEIVEAHNWHIHADSREGI 444

Query: 781 VTTINCRI 788
            TT+  R 
Sbjct: 445 GTTMEIRF 452


>gi|332526668|ref|ZP_08402770.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
 gi|332111071|gb|EGJ11103.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
          Length = 598

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L    +A   A   K+ F+  +S+E+R+P+  I+G  DL++ +    L+ +Q   V    
Sbjct: 210 LQRAKQAADAASIAKSQFLATMSHEMRTPMNGILGALDLMRDT---PLDKRQRALVRTAV 266

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           AS   LL +++D+LD +T+++G +KL+ + + ++ +       + +   +  +++ +  +
Sbjct: 267 ASGESLLCIIDDVLDHSTIESGKLKLDPTPMSMHAVAASAAALLRSTAEQRGLKVDLQIE 326

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGS 728
             +  + V D  RL Q+   ++ N + F+ +G  V L+ +R           F V + G 
Sbjct: 327 ADVPDAVVGDASRLKQVLLNLIGNGIKFTERGG-VTLRLSRAPAPPGMCGVRFEVADTGI 385

Query: 729 SIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP      +F  F            G GLGLSI +  +   GG +++ S +   +  + 
Sbjct: 386 GIPAQAVPKLFQPFSQVDATRSRSHGGTGLGLSISQRIVAAMGGRITVDSVEGRGSRFSF 445

Query: 787 RI 788
            +
Sbjct: 446 TL 447


>gi|332161273|ref|YP_004297850.1| putative virulence sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665503|gb|ADZ42147.1| putative virulence sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 1239

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 153/379 (40%), Gaps = 16/379 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +       +  ++ Q   I+ L   V +    G + + N  F    + + N L    +  
Sbjct: 558 KRRQAALLHARLRQQESIINALPFAVFIRTAAGELAVYNSHFAKAHQDKLNDLLNHNNEP 617

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--M 539
                 S    E D +               SL+   EL     +   IIPL NA+   +
Sbjct: 618 ANWPMTSPLDREIDKYCRLVLTHRKPQMVDLSLEINGELRD---IFLWIIPLDNAERSLL 674

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
             +++++     ER L         A+  K++F+  +S+ELR+P+  I+G  +L    ++
Sbjct: 675 GGWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL----EI 730

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            S        +  +S S+  L+ L++DI+D A ++AG + ++ + +     +  +     
Sbjct: 731 RSEQPVDKNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQ 790

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD 715
               E N+R     D ++    + D  R+ Q+   +L NA+ F+ +GS    +  +A  D
Sbjct: 791 PIADERNLRFSGWVDNQIPDLVMVDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEAIDD 850

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
                   + + G  I      ++F  F      +  +  G GLGL I    I+  GG +
Sbjct: 851 KHGVTNIDITDTGIGISPAAQATLFQPFSQANEGNSPRFGGSGLGLWICHQLIHKMGGEI 910

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S     T++   +P +
Sbjct: 911 TLESQLGKGTSLFITLPLE 929


>gi|148240608|ref|YP_001225995.1| hybride histidine kinase [Synechococcus sp. WH 7803]
 gi|147849147|emb|CAK24698.1| Hybride histidine kinase [Synechococcus sp. WH 7803]
          Length = 891

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 13/252 (5%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
             S+RA RA     +    A + K+ F+ ++S+ELR+P+  IIG++++L         S 
Sbjct: 354 HQSMRAHRA----KKTAFLASKAKSEFLANMSHELRTPMNAIIGYSEMLIEESEELEPSD 409

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +E I +S   LL L+N +LDL+ ++AG M +   +  +N +L++V  +      +N
Sbjct: 410 FVVDLEKILSSGRHLLGLINGVLDLSKIEAGKMTVYNESFSINKVLDDVCATAEPLAQKN 469

Query: 666 NIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----F 719
             +       +       D  ++ Q    ++ NA  F+  GS V L     N +      
Sbjct: 470 KNQFVCERPSRDDDMAFLDVTKVRQSLINLIGNACKFTENGS-VRLSCRLLNSEAGIPQV 528

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            FSV + G  + E     +F+ F        R   G GLGLS+      L GG +S+ SS
Sbjct: 529 SFSVIDTGIGMSEKQQAKLFSDFSQADASTTRQYGGTGLGLSLSRKLSRLMGGDISVQSS 588

Query: 778 DEGVTTINCRIP 789
               +T    +P
Sbjct: 589 LGVGSTFTMILP 600


>gi|51245738|ref|YP_065622.1| Pho family two-component system sensor histidine kinase
           [Desulfotalea psychrophila LSv54]
 gi|50876775|emb|CAG36615.1| related to two-component system sensor histidine kinase (Pho
           family) [Desulfotalea psychrophila LSv54]
          Length = 602

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 152/383 (39%), Gaps = 29/383 (7%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           M ENL  ++D+ +     ++        + EG+     + RI L N A   L+       
Sbjct: 241 MAENLHEKIDMISNQRNQLETL---FSSMREGIIAIDFEERIVLINDAATRLFDP----- 292

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +    +R  +             S   E  +L G+    + S L+ S +P  
Sbjct: 293 GGSPSAGKLVQEFTRSLDLLQQIQYVRETGESLKAEL-TLHGSQ---TTSYLQTSAVPF- 347

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
                       D       +      LR+ + ++  FV +VS+ELR+P+T I G+ + L
Sbjct: 348 --------HMANDDSSGVLIVLNDVTHLRRLESVRRDFVANVSHELRTPITAIRGYVETL 399

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD--AGIMKLNYSTIVLNDLLN 652
               L        +++  +   S+ L +++ND+L L+ ++  +    +      +  ++ 
Sbjct: 400 LDGALDQ-KEDARRFLAIVLRQSSRLSDIINDLLALSRIELDSSTDNIELEEQHICSVVR 458

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK- 711
              Q+      +  I +++     +     +   + Q    ++ NA+ +S + S + ++ 
Sbjct: 459 AALQTCQIDAEQKGIILQLHCPEDI-RVPLNPHLIEQALVNLIVNAVRYSPEKSEIRVEV 517

Query: 712 -AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
            A  +  +   SV ++G  I  +    VF RF  +     R   G GLGL+IV+  +  H
Sbjct: 518 LACEEGQEVSISVADDGCGIGAEHLPRVFERFYRSDKARSRELGGTGLGLAIVKHIVQAH 577

Query: 769 GGHVSISSSDEGVTTINCRIPSK 791
            G V+++S +   T  +  +P K
Sbjct: 578 NGRVAVNSEEGVGTEFSFFLPIK 600


>gi|237715167|ref|ZP_04545648.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408882|ref|ZP_06085427.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445000|gb|EEO50791.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353093|gb|EEZ02188.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 754

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 135/270 (50%), Gaps = 10/270 (3%)

Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Y+   LP  +  T    +N+ D    E  L      L +  E+K SF+ ++S+E+R+P
Sbjct: 488 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEELEAAR-LLAEKAELKQSFLANMSHEIRTP 546

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +I+GF ++L     G  + ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++ 
Sbjct: 547 LNSIVGFANILALED-GLSSVEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 605

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + +L++++  +    +  + +      D        DR+RL+Q+ +  L+NA  F+ 
Sbjct: 606 RCKVRELIDDIYMTHQVLIAPH-LEFLKEVDDTPLEINVDRERLIQVLTNFLNNACKFTE 664

Query: 704 KGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
            G  + L  +   D G+    V+++G  IP +  + +F+RF       Q  G GLGLSI 
Sbjct: 665 TG-YIKLGYSYLPDEGNVQIYVEDSGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSIC 721

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  I   GG + + S     +     +P +
Sbjct: 722 QVIIEKLGGKIELKSEVGKGSRFTVILPCR 751


>gi|228906399|ref|ZP_04070282.1| hypothetical protein bthur0013_5810 [Bacillus thuringiensis IBL
           200]
 gi|228853215|gb|EEM97989.1| hypothetical protein bthur0013_5810 [Bacillus thuringiensis IBL
           200]
          Length = 424

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 168 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 225

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 226 TSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNA 285

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 286 MYKERYIKVSFSCSPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISITEEHKRIS 344

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 345 ITIEDEGEGIPPEDLPHIFDRFYRVDKARTRSTGGTGLGLSIVKEIVELHGGNITVTSEV 404

Query: 779 EGVTTINCRIPS 790
              +     +PS
Sbjct: 405 NHGSCFIISLPS 416


>gi|224538238|ref|ZP_03678777.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520170|gb|EEF89275.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1472

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 4/236 (1%)

Query: 555  LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
            L  K    ++  +IK  F  ++S+ELR+PLT I G  + +     G LN ++ + +  + 
Sbjct: 929  LKHKVSVEQEISDIKLRFFTNISHELRTPLTLIAGPVEQVLQH--GKLNDEEREQLVLVE 986

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++  +L LVN ILD   +    MK+    I L   +  + +S  +   E+ I   + + 
Sbjct: 987  RNTNRMLRLVNQILDFRKIQNKKMKMRVQQIDLIPFIRHIMESFNSLADEHQIDFSMDTK 1046

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   AD  +L +I   +LSNA  ++ +G  + +    +  D I +V++ G  I E+ 
Sbjct: 1047 VSSLKIWADSDKLEKILFNLLSNAFKYTPQGKQIKVMVQEEEKDVILAVEDQGIGIAENK 1106

Query: 735  CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             KS+F RF +   +    +   G+GLS+V+  I++H G +SI S     +  + R+
Sbjct: 1107 QKSLFVRFENLVDKNLFNQASTGIGLSLVKELIDMHHGSISIRSKLGEGSCFSIRL 1162


>gi|332968993|gb|EGK08035.1| phosphate regulon sensor histidine kinase protein PhoR
           [Psychrobacter sp. 1501(2011)]
          Length = 508

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 143/393 (36%), Gaps = 40/393 (10%)

Query: 406 SNPRGGTIWMFENLTVQVDLET----KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
               G   +M   L      E     K   L+K    ++  L + V +   D  ++  N 
Sbjct: 131 PELSGSLTFMANQLYDSKKQEQMTHQKMMGLIKKIRSSLLALQDAVILLDKDDTLEWWNQ 190

Query: 462 AFRSLWKTE-ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
           +  +L     E++      + ++    + Y N     +     + S+ D  + LQ  +  
Sbjct: 191 SAETLLALRSEDQGRSILDLIDVPEFQNYYINAISPNEGLR--LRSWRDYERFLQCEVTH 248

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
                L                            +      L+  ++++  FV +VS+EL
Sbjct: 249 FGTEKL---------------------------LIIYDVTRLQHLEQMRKDFVGNVSHEL 281

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R+PLT I+G+ +         L+ K  +    ++  +  +  ++ND+L L+ ++     +
Sbjct: 282 RTPLTVIMGYIETFSDQP--DLDPKWRRGFNLMTQQTERMNRIINDLLLLSRLENEE-SI 338

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
               + +  L+  +         +    I +  D +L         L      +++NA+ 
Sbjct: 339 RTERVDMPKLMTSIFDDAQAYNKDFGHLIDLHIDSQLD-VYGSEVYLNSALLNLVTNAIK 397

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGL 758
           ++ KG  + +      G   FSV++NG  I  +    +  RF            G GLGL
Sbjct: 398 YTPKGGEIRINWQEVKGGCSFSVQDNGIGIASEHIDRLTERFYRVDSGRSRSTGGTGLGL 457

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +IV+  +  HG  ++I S +   +T     P +
Sbjct: 458 AIVKHVLYQHGAKLTIQSEENKGSTFTVFFPDR 490


>gi|327535268|gb|AEA94102.1| sensor histidine kinase [Enterococcus faecalis OG1RF]
          Length = 591

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PKVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 449 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|307720307|ref|YP_003891447.1| multi-sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
 gi|306978400|gb|ADN08435.1| multi-sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
          Length = 1033

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 163/398 (40%), Gaps = 21/398 (5%)

Query: 402 VIVTSNPRGGTIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAV--FGPDGRIKL 458
           +  +S        + E +T ++ + E  +        E +  L   V +      G I  
Sbjct: 381 IRNSSKTDSALFNLIEYVTTELKEQEKIFRASKFKLDEFLKALDSVVIISRTDMLGNITY 440

Query: 459 SNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL 518
            N  F  +    +  L   +H  NI         +    +L+  I T  +  +       
Sbjct: 441 VNERFEEVSGYTKEELIGKSH--NIVR--DPDVPDEVFTELWKEI-TKGNIWQGEFSNIA 495

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           +  S   ++ SIIP+ +       +          +L +  +   +A+  +  F+ ++S+
Sbjct: 496 KDGSSYYVKSSIIPIHDEN--NEIIEYMAIREDVTSLVQSRKKAEEAEAAQAMFLANMSH 553

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  I+GFT+LL  ++   L++ Q +YV  I++S+  LL++VNDILD + +    +
Sbjct: 554 EIRTPMNGILGFTELLSKTQ---LDTAQEKYVNVINSSTKTLLDIVNDILDSSKITNNKI 610

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSN 697
            L    +          + + +   E  +   +  D  +     +D  RL Q+   +LSN
Sbjct: 611 SLEKIPLNPFVEFATTYELLKSVAEEKALNYTLEIDNAISTCIYSDATRLRQVIINLLSN 670

Query: 698 AMDFSSKGSTVILKAA----RDNGDF-IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR- 751
           A+ F+ +   V    +    ++N     FS++++G  I ++  + +F  F        R 
Sbjct: 671 AIKFTPEYGDVRFCISLLQQKENRQIMHFSIEDSGIGIAKEKLQEIFKPFAQAETSTTRK 730

Query: 752 -RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             G GLGLSI    + + G  + +SS     +     +
Sbjct: 731 FGGTGLGLSISADLLQVFGSELHVSSVKNEGSCFFFDL 768


>gi|302392025|ref|YP_003827845.1| PAS/PAC sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204102|gb|ADL12780.1| PAS/PAC sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 399

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 158/375 (42%), Gaps = 17/375 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           + + E +   + +     +D+L + V     +  I  +N      +    + +    H  
Sbjct: 8   KKNFEEEGVDIEETLTNVLDNLHDIVIYQNLEREILWANETAIEEFNEPFDEIKE-RHCY 66

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ-TML 540
            +    S+   +     +  A  T    ER+ +       + ++    + P+ N +  + 
Sbjct: 67  ELVHDSSQLCED---CLVEKAEATGEIVEREKIN-----PNGNLYLVRVYPVKNKEKEIK 118

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             + ++ ++   RAL E+ E     + ++     ++S+EL++PL  +     LLK +   
Sbjct: 119 GIIRISLNITKRRALKERLEQ----NRLRTELFANLSHELKTPLNLMFSGMQLLKLNLEK 174

Query: 601 SLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           + +  K  +Y+  I  ++  LL LV +++D+  +D+    L++    +  L+ +V  S+ 
Sbjct: 175 NEDEDKYMEYLNTIKRNTNRLLKLVENLVDINKLDSRSYDLSFQNCDIVSLVEKVFFSVK 234

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
                    ++  S+ +      D   + ++   + SNA+ F+ KG  + +  + +  + 
Sbjct: 235 EYAENKKRELEFDSEIEEKVIACDSFNMERVMLNLFSNAIKFTDKGDKISMYLSDEGDNI 294

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SVK+ G  IP+D  + +F RF            G G+GLS+V   I  H G + + S 
Sbjct: 295 SISVKDTGIGIPKDKQEIIFERFGQVDKSFTRNNEGSGIGLSLVNLIIERHDGEIDLHSE 354

Query: 778 DEGVTTINCRIPSKE 792
               +    ++P+++
Sbjct: 355 YGSGSEFIIKLPAQK 369


>gi|229120300|ref|ZP_04249550.1| hypothetical protein bcere0016_6150 [Bacillus cereus 95/8201]
 gi|228663110|gb|EEL18700.1| hypothetical protein bcere0016_6150 [Bacillus cereus 95/8201]
          Length = 463

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELSSSIQTLANDLHYMKTERSEFLAIVAHELRTPLTYVRGYADIALKETTS 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 267 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSQIHISVIEENKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITMEDEGEGIPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFTISLPS 455


>gi|225568038|ref|ZP_03777063.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM
           15053]
 gi|225163134|gb|EEG75753.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM
           15053]
          Length = 1004

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 107/238 (44%), Gaps = 10/238 (4%)

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
                      K  F+  +S+E+R+P+  I G T + K+  +     K    +  I +++
Sbjct: 616 MKSKADAVSRAKTDFLSRMSHEIRTPMNAISGMTTIAKS--VLDDRKKTMDCLNKIESAN 673

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+NDILD++ +++G M+LNY  + L  L+ +++     +  E ++ +  +++   
Sbjct: 674 AYLLSLINDILDMSRIESGKMELNYEPVDLVQLMQKLEYLFKAQAEEKHLELIFVNEYSG 733

Query: 678 G-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPE 732
           G    AD  RL Q+   I+ NA+ F+ +G  + ++             FSV + G  I  
Sbjct: 734 GRRLNADSLRLNQVLVNIIGNALKFTGQG-RITVRVEELEASPMAVLRFSVADTGIGIEP 792

Query: 733 DMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           +    VFN F         +  G GLGL+I    + + GG +   S     +     +
Sbjct: 793 EALSRVFNAFEQADPATAARNGGTGLGLAISSRLVQMMGGTLEADSKVGEGSEFFFTL 850


>gi|197248253|ref|YP_002146648.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211956|gb|ACH49353.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 920

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|89897368|ref|YP_520855.1| hypothetical protein DSY4622 [Desulfitobacterium hafniense Y51]
 gi|89336816|dbj|BAE86411.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 484

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 3/239 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L  K EA+ + D ++   +  VS+ELR+PLT I GF++ +    + S   +Q+ Y++ I
Sbjct: 239 ELKAKIEAIERYDRLRQELLSDVSHELRTPLTVIQGFSEAVLDGLVKSKEQEQN-YLKLI 297

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L  LV+D+LDL  ++          +VLN L+    +          I +++I 
Sbjct: 298 IDETERLRRLVDDLLDLKALEEVETFDEMDYVVLNKLVQISVERFKQLAETREIELEIIL 357

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                +   +  RL Q+ + ++ NA+  S  G+ V ++   +N     +VK++G  IP+ 
Sbjct: 358 PEAPVTIWGNSDRLKQVLTNLVDNAIKHSESGTKVGIQLEFENDWAFIAVKDSGPGIPQG 417

Query: 734 MCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             ++++ RF        RR  G GLGLSIV+  I +H G V   S     T     +P 
Sbjct: 418 ELENIWERFYKIDKSRSRRGTGTGLGLSIVKKIIEMHNGKVLARSRIGQGTVFTVYLPL 476


>gi|298492280|ref|YP_003722457.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc
           azollae' 0708]
 gi|298234198|gb|ADI65334.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc
           azollae' 0708]
          Length = 533

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/497 (21%), Positives = 201/497 (40%), Gaps = 40/497 (8%)

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF-LRSANKLPEQLNWKTWKENIFS 380
             +N  L + N++   L E     L +   ++  ++  L +  +L     W+  K     
Sbjct: 40  LGENAQLLYVNKATCCLTEYSREELLSMKVHELDVDLSLHNWLQL-----WQNLKHLEHD 94

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE------NLTVQ------------ 422
            +KS    K          L  I   +   G  ++ +      +L++Q            
Sbjct: 95  SFKSRYRTKGGRVFLAEVNLRYIKYQDIEFGCAFIQDKGDGLIDLSIQEWTDDGREIKKN 154

Query: 423 VDLE------TKYNTLVKVQGETIDHLSEGV--AVFGPDGR-IKLSNPAFRSLWKTEENR 473
           +  E         +TL+ ++      L E +  ++F   G  I   NPA   L    +  
Sbjct: 155 LQQELTVIQPQHIDTLLHLRESRFRFLLESINASIFLIQGTQISYVNPAAELLTGYTKTE 214

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L  G  +  +  +   + + ++  +     I + D + + L G +  L+  V+++    +
Sbjct: 215 LLTGFDLNQVIKSKKSHNSPANNSEYQEIKILTKDGKERWLVGVMARLNG-VIDFHGQEV 273

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +LT +++T+    E  L +  E  +   E++   V  V ++ R+PL  I     L
Sbjct: 274 E----ILTAIDITNYKYVESELCQTLEKTKLLSELRAHLVAIVCHQFRTPLNVISFSNSL 329

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           LK         K   ++++I      +  +++DIL LA  ++         I L +   +
Sbjct: 330 LKRHIDKWDEEKILPFIKHIQIGVEQINQILDDILFLAKAESVQFSFQPEVIDLVEFCQD 389

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +   +     E +I     S G       D++ +  I + +L NA+ +S  GS V L+  
Sbjct: 390 LISKMLIINSEYHINF--DSRGNCEKVWIDKRLVEPIVNNLLENAIKYSPIGSVVELRVD 447

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
              G+ IF VK+ G +IPE+    +F  F   ++  +  G GLGLSIV++ +NLHGG + 
Sbjct: 448 CHEGEVIFHVKDQGIAIPEEDQNRLFEPFYRGSNIDKVPGHGLGLSIVKTLVNLHGGQMR 507

Query: 774 ISSSDEGVTTINCRIPS 790
           + S     TT    +PS
Sbjct: 508 VVSKVGVGTTFTVVLPS 524


>gi|186471316|ref|YP_001862634.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
 gi|184197625|gb|ACC75588.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
          Length = 720

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 116/263 (44%), Gaps = 5/263 (1%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
            ++   NA  M       D   A     E       A+  K  F+ ++S+ELR+PL  I+
Sbjct: 226 RVVSAFNAMGMRLHRAYLDEREAAVE-REARRMAEAANRAKGEFLANLSHELRTPLNGIL 284

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+  +L   +  SL+ +Q   V  I  S   LL L+++ LD A V+AG +++    + L 
Sbjct: 285 GYAQIL--GRDDSLSLRQRDGVAVIQQSGEHLLTLIDETLDFAKVEAGKLRIEICDVPLA 342

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST 707
            L++ +++ I  K  +  +               AD  RL Q+   +LSNA+ F+ +G  
Sbjct: 343 GLVDTIREIIGVKAEQRRLAFACSVAADAPCGVRADEHRLRQVLLNLLSNAVKFTDRGEV 402

Query: 708 VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFIN 766
            +     ++G   F V + G  I  +  +++F  F        +  G GLGL+I   F+ 
Sbjct: 403 RLFIRRGESGAVRFEVHDTGIGICAEYHETIFMPFEQAGGAERRAGGTGLGLAISRQFVR 462

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
             GG V++ S     +     +P
Sbjct: 463 AMGGEVNVDSVVGRGSVFWFELP 485


>gi|86138705|ref|ZP_01057278.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           MED193]
 gi|85824765|gb|EAQ44967.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           MED193]
          Length = 866

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 151/377 (40%), Gaps = 12/377 (3%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             L  + +         I    + + +    GRI   N A  +++  +   +        
Sbjct: 239 RRLAEERSQAGSRMEAMISSSLDAILMTDRQGRILAFNGAAEAIFGYKREDVIGEQMADL 298

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           I     R  + +    L            R  LQ   E      +E S+    +   M+ 
Sbjct: 299 IIPPHLRQAHYAGMDRLLKTSEARVAGRGRVQLQALRESGEIFPVEVSLSISRSQADMVF 358

Query: 542 F---VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                +++D + A+  L    +     +  K + +  +S+E+R+PLT I+G  DLL+ + 
Sbjct: 359 VAYLRDISDRIAADEELRRARDDALAGERAKANLLTVMSHEMRTPLTGILGAIDLLQET- 417

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               N++QS+Y++ +S S  +LL+ VND+L L+++++GI         L +++  +  S 
Sbjct: 418 --DPNAEQSRYLDAMSVSGELLLHHVNDVLQLSSLESGIASEAACPFDLREVMERLVGSQ 475

Query: 659 ATKMHENN--IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD 715
                 +   + +    D          + L Q    ++ NA+ F+  G+  V ++ +  
Sbjct: 476 QAHARSHGNVLTLNYGLDEAASMVAGQPRALQQALLNLIGNAIKFTRDGAVLVDVQLSAT 535

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVS 773
            G   F V + G  I +   K +F  F++     +R   G GLGL+I    +   GG ++
Sbjct: 536 AGHIEFHVSDTGEGIAKKDLKRIFEDFITLDSSYRRGSEGTGLGLAITRRIVEAIGGTIT 595

Query: 774 ISSSDEGVTTINCRIPS 790
             S     +  +  +P 
Sbjct: 596 CDSELGEGSLFSLTLPL 612


>gi|326623485|gb|EGE29830.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 936

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 378 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 437

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 438 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 494

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 495 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 553

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 554 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 611

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 612 LKSVPGVGTCVSLVLPLQE 630


>gi|294665048|ref|ZP_06730354.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605166|gb|EFF48511.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 641

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 6/243 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +A T        A+ +K+ F+  +S+ELR+PL  I+G++ L+++      N    + +  
Sbjct: 245 QAETAARAQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPAN--LGRGLVI 302

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+     +++D+LD++ + +G ++L      +  L+    + +        I +++ 
Sbjct: 303 IERSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALTRKIALELD 362

Query: 673 SDGK-LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +       F  D  RL Q+ + +LSNA+ F+  G TV +    ++      V++ G  I 
Sbjct: 363 APCDGELWFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMDVEDERLRLCVQDTGIGIA 422

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRI 788
            +    VF+RF        RR  G+GLGLSI    ++LHGG +  SS+ EG        +
Sbjct: 423 AEFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGHGALFTIVL 482

Query: 789 PSK 791
           P +
Sbjct: 483 PFQ 485


>gi|289642527|ref|ZP_06474671.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
           glomerata]
 gi|289507701|gb|EFD28656.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
           glomerata]
          Length = 904

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 138/297 (46%), Gaps = 20/297 (6%)

Query: 512 KSLQGTLELLSDSV-LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           +S + T EL S SV L+ +   L     +L   N  +   A   L EK E L  + + K 
Sbjct: 345 QSQRLTQELRSQSVELQRTNNELEEKAALLEEKNR-EIEMARIGLEEKAEQLALSSQYKT 403

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ ++S+ELR+PL +++    LL  +   +L  KQ  + E I ++ + LL L+NDILDL
Sbjct: 404 EFLANMSHELRTPLNSLLLLAKLLADNPEANLTPKQIDFAETIHSAGSELLELINDILDL 463

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQ 689
           + V+AG M +  +T+    L + V Q       E  +  +V     +   FV D QR+ Q
Sbjct: 464 SKVEAGKMDVEATTVRTTTLCDAVAQIFGPLAEERGLSFEVTVASDVPAEFVTDEQRIQQ 523

Query: 690 IFSKILSNAMDFSSKGSTVILKAARDNGDF--------------IFSVKNNGSSIPEDMC 735
           +   +LSNA+ F+  G  V L     + +                FSV + G  +  D  
Sbjct: 524 VLKNLLSNAVKFTDSGE-VRLDVTVASDEIAFTAPSLSAAPVALAFSVSDTGIGVAADKL 582

Query: 736 KSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           + +F  F         +  G GLGLSI +  + L GG + ++S+    +T    +PS
Sbjct: 583 RMIFEAFQQADGTTSRRYGGTGLGLSISKELVRLLGGAIGVASAVGQGSTFTLYVPS 639


>gi|295689157|ref|YP_003592850.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295431060|gb|ADG10232.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 645

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 10/246 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           RA  A+         A   K+ F+ ++S+E+R+P+  IIG    L  +    L  KQ   
Sbjct: 248 RAFAAVRNAKNKAEAASRSKSEFLANMSHEIRTPMNGIIGVVGALART---DLAPKQRDM 304

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  +  S+  L  L+ND+LD+A V+AG + ++     L      + +    K  E  +  
Sbjct: 305 VHLVETSADSLQVLLNDVLDMARVEAGELAIHPEPFDLRTTCRAIVELFRAKAEEKGLSF 364

Query: 670 KVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI---FSVK 724
           ++    ++    + D  RL Q+   ++SNA+ F+ +G   V + A  +         +V 
Sbjct: 365 ELEIAPEVAERHIGDAARLRQVLGNLVSNAIKFTERGRVEVRIDATPEVDGVQALALAVV 424

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G     +  + +F RF        RR  G GLGLSI  +   L  G + ++S+    +
Sbjct: 425 DTGIGFDAETGQRLFARFAQADGSITRRFGGTGLGLSISRALTRLMNGEIEVASTPGEGS 484

Query: 783 TINCRI 788
               R+
Sbjct: 485 CFTVRL 490


>gi|322421743|ref|YP_004200966.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320128130|gb|ADW15690.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 345

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 145/361 (40%), Gaps = 27/361 (7%)

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                +    ++ +  G       G + L N     +            H+        R
Sbjct: 3   EEQQNIAARLLEEIDSGAVYLDASGMVLLMNRRAEEI-----------LHVGRSEVIGKR 51

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                    ++  +  +  DE   +      +  SV++   + L   Q       + D  
Sbjct: 52  VDMLPLRTPVYRVLSENAQDEPVEVS-----IDGSVIQVRSLLLGGMQPAGELFQLRDIS 106

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
                      + +K    +  FV  ++++L+SPLT I+G+   L       ++     +
Sbjct: 107 -----------SDKKEKRQREEFVAMMTHDLKSPLTVIMGYMQALMGEMPSKVDPSLHLF 155

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ +  S+  +L++++D+LD   ++AG+++++        LL+   +    +   +    
Sbjct: 156 VKEMDKSAVKMLSMIDDVLDAYRLEAGLLQIDRQPCDARSLLDGCCRDGEQEAAVHGSYF 215

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
                  + +   D +++ ++F+ ++ NA+ F+ +  T+ + +A ++   +  V + G  
Sbjct: 216 LSDICDGIPTLDLDWKQITRVFANLIGNAVKFTPRRGTISVTSAIEDNCLLVQVTDTGIG 275

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IPED    +FN++   +     +G GLGL+I ++ +  HGG + + S+    +  +  +P
Sbjct: 276 IPEDELPRIFNKYFRASGAHGFKGTGLGLTISKAIVEAHGGSIRVESAAGKGSRFSVLLP 335

Query: 790 S 790
            
Sbjct: 336 L 336


>gi|182414650|ref|YP_001819716.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841864|gb|ACB76116.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 964

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 10/251 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
               + + L    +A  +A + K+ F+  +S+ELR+PL  +IG  DLL+ +    L    
Sbjct: 423 HLRESAQRLELARDAAERATKAKSDFLAVMSHELRTPLAGVIGVLDLLRNNPPAHL---L 479

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y      S+  LL +++DILD A ++AG +++        ++   V ++   +     
Sbjct: 480 REYTAVARDSAESLLRILDDILDTAKIEAGKLRIEAVPFRPREVFKNVCEAARLRAEAKK 539

Query: 667 IRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGS-TVIL---KAARDNGDFIF 721
           +  K I    +    V D  RL Q+   + +NA+ F+  GS TV L   +  +++  F+ 
Sbjct: 540 LEFKHIFSANMPEVLVGDPVRLRQVVDNLQNNALKFTESGSITVTLTCPEVRKESVVFLI 599

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDE 779
           +V++ G  I +     +F +F        RR  G GLGLSIV++      G VS+ S   
Sbjct: 600 AVRDTGCGIDQATQLRLFEKFEQADVSTTRRYGGTGLGLSIVKALAESMNGSVSVESEPG 659

Query: 780 GVTTINCRIPS 790
              T    +P 
Sbjct: 660 RGATFTFVVPL 670


>gi|222056653|ref|YP_002539015.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565942|gb|ACM21914.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 636

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/522 (16%), Positives = 192/522 (36%), Gaps = 51/522 (9%)

Query: 294 DVSKEITVNDQLTHTYEILHN-------LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
           ++++       L  TYE L         + + +++    + +     +F          L
Sbjct: 132 EIAERRKAEQALRQTYERLAQAEKIALVMPLHVSLEGCWQKVT---PNFCRFLGYREEEL 188

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT----WHLPNGQTLHV 402
              P      +F           +++     +    KS E         +   +G+ +  
Sbjct: 189 LGRP----FRDFTH-------PADFEADWNQVLR-LKSGEIQSFQMEKRFIRKDGKIVWG 236

Query: 403 IVT----SNPRGGTIWMFE---NLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            +     ++ +G  +       ++  +  +E +    V       +    G   F P+  
Sbjct: 237 YLNCSIVTDEQGKPLHFLTYVLDINEKKVVEEELRYNVATLNLAAESADIGTFDFYPETG 296

Query: 456 IKLSNPAFRSLWKT-EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           +   +   R  +       +     +  I        ++     L     T    E ++L
Sbjct: 297 VLRWSETTRRHFGLPCNAPVDYKVFLSGIHEEDRAKVDQLIRQALEQE--TGISTEFRTL 354

Query: 515 QGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIK 569
              L+   +  +        + +      + T ++++D  RAE  L +    L +++   
Sbjct: 355 --GLQDGRERWIAVRGRVFYDHRGGPLRLIGTTLDMSDRRRAEEDLRKTMTDLSRSNLEL 412

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
             F    S++L+ PL  I  +  LL+    G+++ K   Y+ Y    +  +  L+  +L 
Sbjct: 413 AQFAYVASHDLQEPLRMIASYLQLLENKYRGNIDEKADSYIHYAVDGAKRMQRLIEGLLA 472

Query: 630 LATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQ 689
            + +  G +   +S +    + +E   ++   + E+   +       L +   D  +LLQ
Sbjct: 473 YSRITRGAV---FSPVNTGKVFSEALANLDASIKESGAAVH---GEGLPTVFGDEIQLLQ 526

Query: 690 IFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           +F  ++ NA+ +  +     V + A + +G+++F+VK+NG  I E+  + +F  F     
Sbjct: 527 LFQNLIGNAIKYRRRDIPLVVTVSAQKQHGEWLFAVKDNGIGIEEEHYQRIFQIFQRLHS 586

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           R +  G G+GL++ +  +  HGG + + S     TT    IP
Sbjct: 587 RDEYSGTGIGLALCKRIVERHGGRIWVESVFGQGTTFLFTIP 628


>gi|332706881|ref|ZP_08426942.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354765|gb|EGJ34244.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 436

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 141/356 (39%), Gaps = 25/356 (7%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V + G + R+     A  +L K  ++ L  G     +     RY  E       A  +  
Sbjct: 84  VVLTGLNDRVT----ALEALRKGAQDYLVKGKIDSELLIRTIRYAIER------ANTMKQ 133

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
                + LQ   E L   V E +       Q +   +        E  L +     ++ +
Sbjct: 134 LRQSEEQLQRLNEELEHRVAEQTDELRQKNQYLQREIASRKC--LEEELRQALNKEKELN 191

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
           ++K+  V  VS+E R+PL  I+  T+LL+       + K+ ++ + I  +   L  LV+D
Sbjct: 192 DLKSRIVSVVSHEYRTPLATILSSTELLEHYSHKWSSEKKRRHFQRIQTTVQHLTKLVSD 251

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA---- 682
           +L  +  +AG ++     I +     E+ +      +   + I                 
Sbjct: 252 VLLFSKAEAGKLEFKPLPIDVVAFCKEIVEEFKLTANT-GLTINFNCTNNSKETSCCINQ 310

Query: 683 --------DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                   D + L QI S +LSN + +S  G  +       +   +F ++++G  IP + 
Sbjct: 311 GWFEKADLDEKLLRQILSNLLSNGIKYSPDGGDIQFDLIMSDHSTMFRIQDSGIGIPPED 370

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            + +F  F  +++ G   G GLGL+IV+  +NLHGG + + S     T     +P 
Sbjct: 371 QERLFEAFQRSSNVGTISGTGLGLAIVKKCVNLHGGEICVDSEVGVGTAFTVTLPL 426


>gi|312127495|ref|YP_003992369.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777514|gb|ADQ07000.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 467

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 11/259 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN        +  +      +     E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPN-------NSDDEISELISSFNYMTEKLENLEMMRKSFISNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    ADR  + ++   +L NA+ ++  G  + +
Sbjct: 327 IAEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF           GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGVTTINCRI 788
            ++ + S +   +     +
Sbjct: 446 QNIWVESEEGVGSKFTFTL 464


>gi|188580116|ref|YP_001923561.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179343614|gb|ACB79026.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 513

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSK 605
           +  +A+    E      +A+  K+ F+  +S+ELR+PL  I+GF++++K    G+     
Sbjct: 236 ELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHAAPA 295

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y   I  S   LLNL+N+ILDL+ ++AG   L+   + L   + E +  +  +    
Sbjct: 296 YREYATDIHDSGMHLLNLINEILDLSRIEAGRYDLSEEAVQLAHTVEECRHMMTLRARSK 355

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVK 724
                 + D  L    AD + L QI   +LSNA+ F+  G  + +K     +G    SVK
Sbjct: 356 GQTFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYVSVK 415

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  IPED   +V + F   +   +   +G GLGL IV+  I+LHGG   + S     T
Sbjct: 416 DSGPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGT 475

Query: 783 TINCRIPS 790
            +    P+
Sbjct: 476 EVIVTFPA 483


>gi|157151584|ref|YP_001450079.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
 gi|262282636|ref|ZP_06060404.1| histidine kinase [Streptococcus sp. 2_1_36FAA]
 gi|157076378|gb|ABV11061.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
 gi|262261927|gb|EEY80625.1| histidine kinase [Streptococcus sp. 2_1_36FAA]
          Length = 453

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 137/380 (36%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L  +      K     + ++++GV      G+I + N         +   +
Sbjct: 75  INDLSEVTRLTQENLEQETKRLTSILSYMTDGVLATNRRGQIIMINDMASKQLGVDPEEV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              T I ++      Y       DL   I    +    S     E LS  V  ++++   
Sbjct: 135 QN-TSILDLLDIADEY-------DLRDLITKMPELTIDSQDENGEYLSLRV-RFALVRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L        ++V+     +  ++ +V+D+L L+ +D     L+         +  +
Sbjct: 235 DEGALS--EPVAPEFVKVSLTETNRMMRMVSDLLSLSRIDNDSSHLDVELTNFTAFITFI 292

Query: 655 KQSI---ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                   ++       I             D  ++ Q+   I++NA+ +S  G  + + 
Sbjct: 293 LNRFDKIKSQDETKKYEIVRDYPITPIWVEIDTDKMTQVIDNIMNNAIKYSPDGGKITVG 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
                   I S+ + G  IP+     +F+RF          + G GLGL+I +  I  H 
Sbjct: 353 MKTTEDQLIISISDEGLGIPKKDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHH 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S  E  +T    +P
Sbjct: 413 GFIWAKSEYEVGSTFTIVLP 432


>gi|157803446|ref|YP_001491995.1| histidine kinase sensor protein [Rickettsia canadensis str. McKiel]
 gi|157784709|gb|ABV73210.1| Histidine kinase sensor protein [Rickettsia canadensis str. McKiel]
          Length = 497

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   L +       F  ++S+ELR+PL +IIGF+++L + 
Sbjct: 238 TNYARQIIEEQLETNRNLKAQIVKLERTSSSNTKFFANISHELRTPLNSIIGFSEILMSE 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L++     
Sbjct: 298 RDA---EKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSMDLDLNKLISSSLAL 354

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           + ++  +  + +      +     AD +RL Q+   +LSNA+ F++ G +V +   +D  
Sbjct: 355 VKSRADQAEVALISKLPKEHVVIKADPKRLKQVLLNLLSNAVKFTNSGGSVTIALKKDEL 414

Query: 717 -GDFIFSVKNNGSSIPEDMCKS---VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                  V + G  I E        VF + + +    +  G GLGL + +  + L  G  
Sbjct: 415 AKLVYIKVIDTGIGIEEKDIPKTLSVFGQ-IDSELSRKYEGTGLGLPLTKKLVELMKGKF 473

Query: 773 SISSSDEGVTTINCRI 788
            + S     TT+    
Sbjct: 474 DLQSKINKGTTVTITF 489


>gi|70729572|ref|YP_259310.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68343871|gb|AAY91477.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 883

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 110/673 (16%), Positives = 226/673 (33%), Gaps = 76/673 (11%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
            ++  + +     +    +            +S+       DQ   I+  N  ++     
Sbjct: 83  QAMAELKAGNHLLSEARLRAETAHQHLIDAIESISDAFVLFDQEQRIVLFNSRFRAFWSH 142

Query: 229 EGIVFQKA--IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIV-RVLNS 285
             +       + E R+L            S  ++     +      N +  ++  R    
Sbjct: 143 SRVRIMAGMRLSEVRRLLTSTGLFSEEPRSGGDEQLLYRLH-----NGRWLQVSERPTRE 197

Query: 286 FGEAGIAIDVSK---------EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
            G   +  D+++         E  V  +       + NL+  +A+      L+  NR F+
Sbjct: 198 GGRVILFTDITEVKHSETLRREQAVAQKSHLLQRAVDNLSQGVAMVSAEGVLELWNRRFL 257

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
           EL  +  A +A +    E++         P+  +                 H+    L +
Sbjct: 258 ELSGL--APVAAHRLFAEVIGDSELRLLSPDSRDAN-----------GRPIHECEQRLSD 304

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           G+ L +     P GG +  F ++T +       +   +      DH+   +A    D   
Sbjct: 305 GRVLEIRTHPLPTGGFVNTFTDITERYQHAEALSESERWIRLITDHVPALIAYLNADLVY 364

Query: 457 KLSNPAFRSLWKTEENRL--------SPGTHIRNIAATCSRYYNESDGWDLFAA------ 502
           + +N  +   +      +            H + + +   R          FA       
Sbjct: 365 EFTNKVYEEWYCWPRGVMLGQSLREVHSEQHYQRLESYVERALAGESVTFEFAETNINNQ 424

Query: 503 -----------------------IITSFDDERKSLQGTLELLSDSVLEYS-IIPLPNAQT 538
                                  +I    + R++ +   +   +  L             
Sbjct: 425 ERYMLRSYVPNRLANGEVVGIFVLIRDITERRRTAEALHQAYQNLELRVRERTAELTTLN 484

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
                 + +  R E  L E      +A+  K  F+  VS++L  PL     FT  L   +
Sbjct: 485 QQLLREIEERSRVESRLREAKAEAERANLSKTKFLAAVSHDLLQPLNAARLFTSALLERR 544

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
               +S     V  +S S   + NL+  ++D++ +DAG++K + +   L++LL  +    
Sbjct: 545 DPQASS---ALVRNVSNSLEDVENLLGTLVDISKLDAGVIKADIAPFALSELLENLAAEY 601

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
           A       + +  ++   L    +D Q L +I   +LSNA+ ++ +G  V+L   R    
Sbjct: 602 AQVARSEGLELHFVACSAL--VRSDIQLLARILRNLLSNAIRYTRQG-RVVLGCRRQGRW 658

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISS 776
               V ++G  I  +  + +F  F     +   Q RG+GLGL+IVE    + G  + + S
Sbjct: 659 LSIQVWDSGMGIAAERLEEIFQEFKRGEEQRPDQDRGLGLGLAIVEKIAGILGHRIGVRS 718

Query: 777 SDEGVTTINCRIP 789
                +  + ++P
Sbjct: 719 WPGRGSVFSVQVP 731


>gi|42780488|ref|NP_977735.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42736407|gb|AAS40343.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 466

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 129/280 (46%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +    + LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITKPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  IRI    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++++   +I+   + +     ++K+ G  I  +  +++  RF        
Sbjct: 358 LHNVLDNAIRYTNQNGDIIVTLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKL 457


>gi|254414468|ref|ZP_05028234.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196178698|gb|EDX73696.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 421

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 144/344 (41%), Gaps = 15/344 (4%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           V + G + ++     A  +L +  ++ L  G     +     R+  E          +  
Sbjct: 76  VVLTGLNDKVT----ALEALRQGAQDYLVKGKIDHELLTRSIRHAIERSQT---LKRLRQ 128

Query: 507 FDDERKSLQGTLE-LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            +++ + L   LE  ++    E         +       +      E  L +     ++ 
Sbjct: 129 SEEKLQQLNEELECRVAKQTEELR------QKNHDLQQEIAQRQHLEAELRQSLTKEKEL 182

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            E+K++ +  VS+E R+PL  I+  ++LL+         K+ ++ + I  +   +  L++
Sbjct: 183 SELKSNIISVVSHEYRTPLATILSSSELLQHYGHKWQEDKKQRHFQRIQNTIHHMTQLIS 242

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+L +   +AG ++     + L     E+ + +   +   + +I     G+      D +
Sbjct: 243 DVLLINKAEAGKLEFKPVPLDLEAFCQELVEELQLTVKTPH-QIGFRRQGRSRWVGLDEK 301

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            L Q  + +LSNA+ +S +G TV      D     F++K+ G  IPE     +F+ F  +
Sbjct: 302 LLRQFLTNLLSNAIKYSPEGGTVQFDLIFDADQVRFTIKDQGIGIPEKEQAQLFDAFYRS 361

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++ G   G GLGL+IV+  +  H G +++ S     TT    IP
Sbjct: 362 SNVGTISGTGLGLAIVKKCVERHQGEIAVDSEVGKGTTFIVTIP 405


>gi|328949780|ref|YP_004367115.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450104|gb|AEB11005.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 368

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 109/246 (44%), Gaps = 7/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     R      EAL + +  +   +  V++ELR+PL  + G+ + L    +    + Q
Sbjct: 125 ELGELARHFNRLAEALDRVEASRVELIGTVAHELRTPLAALQGYAEALADGVMPPERAAQ 184

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +     I+   + +  LVND+  ++ V+AG ++++  ++    LL E     A    +  
Sbjct: 185 A-----IAREVSAMRRLVNDLSLVSRVEAGAIEVHPVSVAPRVLLEEALDRFAPAFAQKG 239

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+ + +  ++    AD +R+ Q+ S +L NA+  +  G TV+L A  +     F V++ 
Sbjct: 240 VRLLLEAPEEMPWVQADPERVQQVLSNLLVNALRHTPSGGTVVLGARVEGDAVRFHVRDT 299

Query: 727 GSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IP +    VF RF            G G+GL+I    +   GG + + S+       
Sbjct: 300 GPGIPPEHQPRVFERFYRVDPARSRSAGGSGVGLTIARGLVEAMGGRIGLESAPGRGAEF 359

Query: 785 NCRIPS 790
              +P 
Sbjct: 360 FFTLPL 365


>gi|318605169|emb|CBY26667.1| putative Histidine protein kinase sensor [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 1185

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 153/379 (40%), Gaps = 16/379 (4%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +       +  ++ Q   I+ L   V +    G + + N  F    + + N L    +  
Sbjct: 504 KRRQAALLHARLRQQESIINALPFAVFIRTAAGELAVYNSHFAKAHQDKLNDLLNHNNEP 563

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT--M 539
                 S    E D +               SL+   EL     +   IIPL NA+   +
Sbjct: 564 ANWPMTSPLDREIDKYCRLVLTHRKPQMVDLSLEINGELRD---IFLWIIPLDNAERSLL 620

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
             +++++     ER L         A+  K++F+  +S+ELR+P+  I+G  +L    ++
Sbjct: 621 GGWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLEL----EI 676

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
            S        +  +S S+  L+ L++DI+D A ++AG + ++ + +     +  +     
Sbjct: 677 RSEQPVDKNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQ 736

Query: 660 TKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARD 715
               E N+R     D ++    + D  R+ Q+   +L NA+ F+ +GS    +  +A  D
Sbjct: 737 PIADERNLRFSGWVDNQIPDLVMVDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEAIDD 796

Query: 716 NGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHV 772
                   + + G  I      ++F  F      +  +  G GLGL I    I+  GG +
Sbjct: 797 KHGVTNIDITDTGIGISPAAQATLFQPFSQANEGNSPRFGGSGLGLWICHQLIHKMGGEI 856

Query: 773 SISSSDEGVTTINCRIPSK 791
           ++ S     T++   +P +
Sbjct: 857 TLESQLGKGTSLFITLPLE 875


>gi|304380924|ref|ZP_07363583.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|304340510|gb|EFM06445.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
          Length = 421

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 62  VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 119

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 120 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 172

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 173 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 206

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 207 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 265

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 266 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 324

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 325 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 384

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 385 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 421


>gi|284050736|ref|ZP_06380946.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 478

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 11/224 (4%)

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            ++S+E+R+P+  I+GF DLLK       + KQ  Y++ I+A    L++L++DILDL+ +
Sbjct: 1   ANMSHEIRTPMNAILGFCDLLKGLV---EDDKQQSYLDAIAAGGRALISLIDDILDLSKI 57

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFS 692
           +AG ++L Y  + L  LL E++Q          + +++  +  +   +A D  RL QI  
Sbjct: 58  EAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQINFEPNVPKIIAFDEVRLRQILF 117

Query: 693 KILSNAMDFSSKGS-TVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNA- 746
            I+ NA+ F+  GS T+ ++A   + D        V + G  I  D  + +F  FV +  
Sbjct: 118 NIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADTGIGINPDQHQQIFEAFVQSEG 177

Query: 747 -HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               +  G GLGL+I     +L GG +++ S     +      P
Sbjct: 178 QSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQLGLGSVFTFTFP 221


>gi|218896332|ref|YP_002444743.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218542783|gb|ACK95177.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 466

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 134/291 (46%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +         ++Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--AQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV+  +++HGG   I S  +  TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|148252119|ref|YP_001236704.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146404292|gb|ABQ32798.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 850

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 12/252 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R         +A   A+  K++FV  +S+E+R+P+  ++G    L  +   +L+ +Q + 
Sbjct: 310 RLWERHEHLIDAAEAANAAKSTFVAMMSHEIRTPMNAVLGLATTLLET---NLDPEQRRS 366

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I  +   LL ++NDILD + +++G + L         L++     I  +    ++++
Sbjct: 367 VVAIHNAGDNLLEILNDILDFSKLESGQLSLEDIAFSAEALVHNTLSIIGPRASAKDLKL 426

Query: 670 KVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFS--VK 724
           + ++D     + V D  R+ QI   ++SNA+ F++ G  VI     A+D+        V 
Sbjct: 427 RSVNDPAVPPALVGDAGRIRQILLNLVSNAVKFTAAGEVVITTRCLAKDDAKATVEWTVT 486

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  D   S+F  FV   +   RR  G GLGL+I +      GG + ++S+    +
Sbjct: 487 DTGIGIAADKIGSLFANFVQADNSISRRFGGSGLGLAICKRLTEQMGGEIDVTSTLGRGS 546

Query: 783 TINCR--IPSKE 792
           T + R  +P  E
Sbjct: 547 TFSFRLTLPIAE 558


>gi|51832259|gb|AAU10313.1| two-component histidine kinase [Alternaria brassicicola]
          Length = 1328

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 155/403 (38%), Gaps = 45/403 (11%)

Query: 423 VDLETKYNTLVK---VQGETIDHLSEGVA--------VFGPDGRIKLSNPAFRSLWKTEE 471
            DL    NT+ +   +Q  +I  +++ +A            +G I+L       +    +
Sbjct: 573 KDLTNNVNTMAQNLTLQVRSISEVTQAIAKGDMSRRVHVDAEGEIRLLKDTVNDMVMRLD 632

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDL---FAAIITSFDDERKSLQGTLELLSDSVLEY 528
                   +        +   ++D  D+   +  I T  +   ++L   +    D     
Sbjct: 633 EWSLAVKRVARDVGVDGKMGGQADVRDIDGRWKEITTDVNTMAQNLTSQVRAFGD----I 688

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEK--------------NEALRKADEIKNSFVQ 574
           +   +    T +T     +    +R + +                EA   A++ K+ F+ 
Sbjct: 689 TNAAMEGKFTQITVEASGEMDELKRKINQMVSSLRESIQRNTAAREAAELANKTKSEFLA 748

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           ++S+E+R+P+  IIG T L   +    L   Q + +  +   +  LL +++DILD++ ++
Sbjct: 749 NMSHEIRTPMNGIIGMTQLTLDT---DLTHAQREMLTIVHNLAGQLLTIIDDILDISKIE 805

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSK 693
           A  M +      +   +    +S A++ +E  + +      K+    V D  RL QI   
Sbjct: 806 ANRMVMEEIPFSMRGTIFNALKSSASRANERKLNLAYDVSYKVPDYVVGDSFRLRQIILN 865

Query: 694 ILSNAMDFSSKGST-VILKAARDNGD------FIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           ++ NA+  +  G   V +  A++         F F+V + G  I  D    +F+ F    
Sbjct: 866 LVGNAIKLTEPGEVKVAISMAQEQECDPDHYVFQFAVSDTGIGIRGDKLNLIFDTFQQAD 925

Query: 747 HRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
               R   G GLGLSI +  + L GG + + S     +     
Sbjct: 926 GSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDAGKGSVFYFT 968


>gi|116749724|ref|YP_846411.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698788|gb|ABK17976.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 488

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 162/383 (42%), Gaps = 22/383 (5%)

Query: 419 LTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           +    DL T+Y+   K       T D   +G+A    +G ++  N     +   EE   +
Sbjct: 108 IAEIKDLHTRYDEEFKRAVPGKGTEDQTRKGIA----EGLLERGN---ELVRHREELIGA 160

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
                R++A + +R         +  A++ +F   R    G    L +   E   +    
Sbjct: 161 KTVEARDMAESAARDMGWLTVAGIGGALMLAFFHAR----GMSRPLKNLAQEMRRVGRGE 216

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
               L      + V          E L + +E+K  F  HVS+ELR+PLT I     LL 
Sbjct: 217 FTRSLDLRAPLEVVELAETFNWMTEQLARLEELKADFTAHVSHELRTPLTAIREGIALLL 276

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
               G L+S Q + +E +  +   L   ++ ILDL+ ++  +M+  Y+   L  L+ +  
Sbjct: 277 EEIPGPLSSSQKEILEVVRGNGERLFVSISSILDLSRMEGEMMEYQYAPCDLQTLIEKSV 336

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-- 713
           Q +     + NI ++ I  G L   + D  R+ Q+   ++SNA+ F+ +G  + +     
Sbjct: 337 QGLDPIARKKNIGVETIRTGNLPLLMLDESRMRQVIDNLMSNALKFTPEGGRISITTVLK 396

Query: 714 ---RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINL 767
              R+ G  +   V + G  IPE+  + VF RF  + H    + +G GLGL+I    +  
Sbjct: 397 RDDREKGRVVEVRVSDTGHGIPEEDVEKVFGRFYRSPHHRGKRHQGTGLGLAIARHIVTA 456

Query: 768 HGGHVSISSSDEGVTTINCRIPS 790
           HGG +   +      TI   +P+
Sbjct: 457 HGGRIWAENEPASGATIVFTLPA 479


>gi|284166170|ref|YP_003404449.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015825|gb|ADB61776.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 520

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 159/399 (39%), Gaps = 21/399 (5%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLS 459
           + +    G  +     LT   + E     L + +    E ++    G+A    DG     
Sbjct: 122 VGSIAGLGVGVMEARALTRAAEAERSEQALREERNFIEELVETAPIGIATLDGDGAFDFL 181

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N   R L+    + +       ++              +  +  I    +         E
Sbjct: 182 NDQIRDLFGYTSDDIGGYEERTDLFDPIRLDGTPLAPEESPSYRIVEHGETVHDGPIGFE 241

Query: 520 LLSDS--VLEYSIIPLPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                   L  S  PL +      +LT  +VT+ V  ER L E NE L         F  
Sbjct: 242 RPDGERVWLLISGKPLQDDGRRKAVLTCTDVTERVEYERDLQESNERL-------EQFAY 294

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             S++L+ PL  I  +  LL+      L+++  +++++    +  +  +++ +LD + VD
Sbjct: 295 AASHDLQEPLRMISSYLQLLENRYADELDAEAREFIDFAVDGADRMRGMIDALLDYSRVD 354

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
                  + T+ L+ +L++V+  +  ++  ++  I V S   L     D ++L Q+F  +
Sbjct: 355 --KETDTFETVELDSVLSDVRADLRARIEASDAEIAVDS---LPRVYGDGEQLRQVFRNL 409

Query: 695 LSNAMDFS-SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           L NA+++S  +   V + A RD  +++ +V++ G  I  +    VF  F       +  G
Sbjct: 410 LDNAIEYSGEEPPRVRVSAERDEDEWVIAVRDEGIGIDTEELDRVFEVFERLHPPDEHDG 469

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            G+GL++ E  +  H G +   S     +T    +P +E
Sbjct: 470 TGIGLALCERIVERHNGEIWAESVPGDGSTFYFTVPVEE 508



 Score = 61.1 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 51/146 (34%), Gaps = 7/146 (4%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E  + ++     E++    + IA  D +    F N    +L+      +       +L +
Sbjct: 148 EQALREERNFIEELVETAPIGIATLDGDGAFDFLNDQIRDLFGYTSDDIGGYEERTDLFD 207

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNP-----RGGT 412
            +R            +++  I    ++       +  P+G+ + ++++  P     R   
Sbjct: 208 PIRLDGTPLAPEESPSYR--IVEHGETVHDGPIGFERPDGERVWLLISGKPLQDDGRRKA 265

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE 438
           +    ++T +V+ E       +   +
Sbjct: 266 VLTCTDVTERVEYERDLQESNERLEQ 291


>gi|119471294|ref|ZP_01613797.1| putative sensory box histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
 gi|119445760|gb|EAW27043.1| putative sensory box histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
          Length = 640

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 15/248 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +    ++A E K +F+  +S+E+R+P+  +IG  DLL+ +    L+  Q +    I
Sbjct: 263 ALERETLKAQRASETKTTFLATMSHEIRTPMNGVIGTIDLLRQT---DLDGAQHRLSTII 319

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL++++DILD + ++AG + ++     ++D L EV + +++   +  + +++  
Sbjct: 320 RESAFSLLSILDDILDFSKIEAGKLNIDPIPFSVSDTLEEVTRVLSSVAKKRELDLELSI 379

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG-----DFIFSV 723
              +    V D  R+ Q+   + SNA+ F+S        V +     +         F V
Sbjct: 380 APDIPVNLVGDSVRVRQVLYNLCSNAIKFTSTDEKTQGHVRISVEVAHNTADHFTLRFCV 439

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +NG  + +   + +F+ FV       R   G GLGLSI +S   L  G + ++S     
Sbjct: 440 TDNGKGMTQTQLRDIFSPFVQAESSITREFGGTGLGLSICKSLTELMLGTIHVNSHAGIG 499

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 500 SEFTVELP 507


>gi|15889688|ref|NP_355369.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15157594|gb|AAK88154.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 1131

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + + AL +  E    A+  K+ +V  +S+ELR+PL  ++G+  +L+  +  ++ + + 
Sbjct: 656 HKKTDAALQDAKETAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILERDE--TIPAPRQ 713

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L++V      +     +
Sbjct: 714 SAIKVIRRSADHLSGLIDGLLDISKIEAGRLQVYSNEINIKDFLDQVVDMFRPQAQAKGL 773

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +      L  +V  D +RL QI   +LSNA+ F+ +GS V    A  +    F+V + 
Sbjct: 774 EFRHERTAALPQYVRTDEKRLRQILVNLLSNAIKFTDEGS-VTFDVAYRSQVASFTVSDT 832

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E     ++  F        R   G+GLGL+I     N  GG +S+SS  +  +T 
Sbjct: 833 GRGIAEKDLARIYEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEISVSSEKDNGSTF 892

Query: 785 NCRI 788
             R+
Sbjct: 893 RVRL 896


>gi|295090648|emb|CBK76755.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 467

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 126/281 (44%), Gaps = 8/281 (2%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           K++   L+ ++ +  EY+   L  +  + T     +       L      L K +E ++ 
Sbjct: 189 KTVYFPLKKITRAATEYAAGNLSYSIELHTQD---EMGYLANTLNYMAMELNKMEEYQHK 245

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ +VS++ RSPLT+I G+ + +    +        +Y+  I A +  L  L   +L L 
Sbjct: 246 FIANVSHDFRSPLTSIKGYLEAIIDGTIPP--ELYEKYLNIIIAETERLNKLTQGMLTLN 303

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           ++D+    L  +   +N ++ +   +     +   I   +     +    AD  ++ Q+ 
Sbjct: 304 SLDSKGF-LTRTNFDINRVIKDTAAAFEGTCNAKGITFDLTFSDSIQMVFADLGKIQQVL 362

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749
             ++ NA+ FS + S + ++ A  +     SVK+ G  IP+D  K ++ RF  +      
Sbjct: 363 YNLIDNAIKFSHEDSVIYIQVAEKHEKIFVSVKDTGVGIPKDSIKKIWERFYKSDPSRGK 422

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++G GLGL+IV+  I  H  ++ + S++   T     +P 
Sbjct: 423 DKKGTGLGLAIVKEIIQAHDENIDVVSTEGVGTEFIFSLPK 463


>gi|302864826|ref|YP_003833463.1| ATP-binding region ATPase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|315501111|ref|YP_004079998.1| histidine kinase [Micromonospora sp. L5]
 gi|302567685|gb|ADL43887.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
           ATCC 27029]
 gi|315407730|gb|ADU05847.1| histidine kinase [Micromonospora sp. L5]
          Length = 448

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/419 (24%), Positives = 182/419 (43%), Gaps = 11/419 (2%)

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLV 433
           ++ +      SE  ++  H  +G  +   +  +  G  + +  +L+    L   +Y    
Sbjct: 35  QDQVRIATALSEVARELLHGADGADVTFALDRDAVGRRV-LQVDLSPLRPLPGGRYEPQS 93

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
                 +D L   V     D  +++S    R     EE        +R   A  +     
Sbjct: 94  GAVARLVDTLR--VVAVEGDTVVRMSR---RVPDHAEELTAERAAELRAELAERAPGSAL 148

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS--IIPLPNAQTMLTFVNVTDSVRA 551
            +     A +I +  DE +S +  L +L+  + E +  ++ L N  T          V  
Sbjct: 149 DELAAQNAQLIAAL-DEVRSQRDELAVLNSELQETNHGVMALYNQLTEELEETNRGVVAL 207

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
              L EK+  LR A E K+ F+ +VS+ELR+P+T IIG   LL  S    L  +Q++ V 
Sbjct: 208 YAELDEKSAQLRAASESKSRFLANVSHELRAPVTAIIGLARLLADSASDPLTGEQARQVG 267

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I +S+  LL LVN++LDLA  ++G ++ ++S + L  +  +++ ++        + + V
Sbjct: 268 LIRSSAGDLLGLVNELLDLAKAESGRIEPDWSDVDLRAVFGQLRGTLRALAARPEVELVV 327

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                  +  +D   L Q+   +L N + F+ +G  V L+A R  G +  SV + G  IP
Sbjct: 328 EEPPAPATVRSDEVLLAQVLRNLLHNGLKFTERGE-VRLRAERRGGQWTLSVTDTGVGIP 386

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++ + VF  F       +  G GLGL      I L GG + ++S     +T    +P+
Sbjct: 387 PELHERVFEEFYQVPGTTRVGGTGLGLPYARRLITLLGGTLELTSEPGRGSTFTVVLPA 445


>gi|229013875|ref|ZP_04171003.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048]
 gi|228747544|gb|EEL97419.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048]
          Length = 484

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 123/272 (45%), Gaps = 7/272 (2%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++
Sbjct: 209 RIKEGDLDFQI-PVTSYDEIGRLNQGFEEMR--KRLKESIEMQTQYEENRKELISNISHD 265

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   + 
Sbjct: 266 LKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVP 324

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             + TI LN  + E+ + +   + E  I + +          AD +++ ++ S ++ N++
Sbjct: 325 FQFETIELNVFMQELLEEMQMDLSEEGIEVYLQLQSSPLYVTADCEKINRVISNLIHNSV 384

Query: 700 DFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
            +  K    + +    DN   I  V +NGS I  D    +F RF            G GL
Sbjct: 385 KYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFYRAEQSRNSSTGGSGL 444

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  +  HGG +   S     T+I   +
Sbjct: 445 GLAIAKQIVEEHGGEIWAESKLGEGTSIFFSL 476


>gi|227820411|ref|YP_002824382.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227339410|gb|ACP23629.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 1126

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 121/242 (50%), Gaps = 4/242 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + + AL    EA   A+  K+ +V  +S+ELR+PL  ++G+  +L+  +  ++ S + 
Sbjct: 656 HKKTDAALQNAKEAAESANRAKSRYVVGLSHELRTPLNAVLGYAQILERDE--TIPSSRQ 713

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  S+  L  L++ +LD++ ++AG +++  + I ++D L+++      +     I
Sbjct: 714 GAIKVIKRSADHLSGLIDGLLDISKIEAGKLQVYSNEINIHDFLDQIVDMFRPQAQAKGI 773

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +      L  +V  D +RL QI   +LSNA+ F+ +G  +    A  +    F+++++
Sbjct: 774 GFEHNRGPTLPQYVRTDEKRLRQILVNLLSNALKFTDQG-LIRFDIAYRSQVATFTIEDS 832

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I +     +F+ F       +  G+GLGL+I        GG +S++S  +  T    
Sbjct: 833 GRGISDKDLPKIFDPFQRGDAEHRMPGLGLGLTITRLLTQTLGGEISVTSEKDKGTAFRV 892

Query: 787 RI 788
           R+
Sbjct: 893 RL 894


>gi|283798621|ref|ZP_06347774.1| sensory box histidine kinase [Clostridium sp. M62/1]
 gi|291073607|gb|EFE10971.1| sensory box histidine kinase [Clostridium sp. M62/1]
          Length = 467

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 126/281 (44%), Gaps = 8/281 (2%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           K++   L+ ++ +  EY+   L  +  + T     +       L      L K +E ++ 
Sbjct: 189 KTVYFPLKKITRAATEYAAGNLSYSIELHTQD---EMGYLANTLNYMAMELNKMEEYQHK 245

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+ +VS++ RSPLT+I G+ + +    +        +Y+  I A +  L  L   +L L 
Sbjct: 246 FIANVSHDFRSPLTSIKGYLEAIIDGTIPP--ELYEKYLNIIIAETERLNKLTQGMLTLN 303

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
           ++D+    L  +   +N ++ +   +     +   I   +     +    AD  ++ Q+ 
Sbjct: 304 SLDSKGF-LTRTNFDINRVIKDTAAAFEGTCNAKGITFDLTFSDSIQMVFADLGKIQQVL 362

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG-- 749
             ++ NA+ FS + S + ++ A  +     SVK+ G  IP+D  K ++ RF  +      
Sbjct: 363 YNLIDNAIKFSHEDSVIYIQVAEKHEKIFVSVKDTGVGIPKDSIKKIWERFYKSDPSRGK 422

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            ++G GLGL+IV+  I  H  ++ + S++   T     +P 
Sbjct: 423 DKKGTGLGLAIVKEIIQAHDENIDVVSTEGVGTEFIFSLPK 463


>gi|161614192|ref|YP_001588157.1| hypothetical protein SPAB_01934 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363556|gb|ABX67324.1| hypothetical protein SPAB_01934 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 920

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|159030650|emb|CAO88320.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 790

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 164/381 (43%), Gaps = 10/381 (2%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           + ++   Q+    +         E ++ L   + ++ P+  I   N A+           
Sbjct: 139 ILDDSPPQLRTSDRIPPRSDRPLEFLEQLPLPLLLYSPEAGILYQNQAWCQQIGAAFPAN 198

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
              +    +    +        +      +TS   +   L      L+D+   Y +I   
Sbjct: 199 IDKSPFALVNDPLNLPSPTPPLFPQRLETLTSGLTKTWRLLSVPLNLTDN---YPLIEKA 255

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +   +L   ++T+  +  + L  KN  L   + +K+ F+  VS+E +SPLT +IG + LL
Sbjct: 256 SGLWLLLATDITEQQQYCQELAVKNADLVHLNRLKDEFLACVSHEFKSPLTAVIGLSSLL 315

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +  K+G LN +QS+Y + I  S   L+ LVND+LDL  ++ G ++L  S + ++ L   V
Sbjct: 316 REQKIGELNPRQSKYADLIYRSGRQLMALVNDLLDLTRLETGQLQLTLSRVKIDRLCQRV 375

Query: 655 KQSIATKMHENNIRI----KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
              I  K  +  + +    ++  +  L   +AD  RL Q+   +L NA+ F+  G  + +
Sbjct: 376 YDIIVDKYPQR-LDLPSSYRLDIESGLDYVLADEARLQQMLVHLLDNAVKFTIDGGNLGI 434

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLH 768
           K  R      F+V + G  IPE+    +F +F         Q  G GLGL + +     H
Sbjct: 435 KVNRWENWLAFTVWDTGIGIPEESQHLIFQKFQQLESPFTRQFEGAGLGLVLSQKLARCH 494

Query: 769 GGHVSISSSDEGVTTINCRIP 789
           GG +S  S  +  +     +P
Sbjct: 495 GGDLSFVSRAQEGSEFTLLLP 515


>gi|317051142|ref|YP_004112258.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
            indicum S5]
 gi|316946226|gb|ADU65702.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum
            S5]
          Length = 1150

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 137/325 (42%), Gaps = 12/325 (3%)

Query: 471  ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
                   +  R+     +R  ++ D            D +   L        D V+ +  
Sbjct: 830  HIHPDDWSRYRSHMQAAARQASQVDYHGELEYRALRCDKQMIHLH-------DHVIGFRD 882

Query: 531  IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                         +++     E  L E       A+ +K+ F+ ++S+ELR+PL  IIG+
Sbjct: 883  SSAALPSIFGATRDISRHKETEIMLLESRNRSELANRVKSQFMANMSHELRTPLNAIIGY 942

Query: 591  TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            +++L+         +  Q +E +  +   LL ++NDILD+A +++   +L   +  +   
Sbjct: 943  SEMLQEEYRSDPQGQIYQDMERVQKAGRQLLQIINDILDMADLESQTAQLQAESFDICSE 1002

Query: 651  LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VI 709
              +V QS+   +H+N   + V  D  +G+  +DRQ++ Q+   +L+NA  F+  G   + 
Sbjct: 1003 ARQVAQSVQAAIHKNGNTLDVRCDENIGTMYSDRQKIRQVLIHLLNNAGRFTENGQVALT 1062

Query: 710  LKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
            + A + + +   +  V++ G  I   + + +F  F        R   G GLGLSI   F 
Sbjct: 1063 VSAEQRHSEPWVLLRVRDTGIGIDPSIHEQIFEPFTLGDSSSTRLYGGSGLGLSISRRFC 1122

Query: 766  NLHGGHVSISSSDEGVTTINCRIPS 790
             + GG +++ S           +P 
Sbjct: 1123 EMMGGAITLQSETGKGAEFTVALPL 1147


>gi|284053861|ref|ZP_06384071.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
 gi|291570304|dbj|BAI92576.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 368

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 113/257 (43%), Gaps = 7/257 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N    ++   + +  +   +  +   +L+  ++ +   +  +++ELR+P+T + G+ + +
Sbjct: 110 NLSERMSSSEIHELNQLAMSFNQMASSLQDVEQKRRELISDLTHELRTPITVVRGYLEEM 169

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              ++        Q     +  +  L  L+N++ +L+ V++G + +N   + L  LL  +
Sbjct: 170 AEGRISPSPDIYQQL----TKETKRLERLINNLQELSKVESGYLPINPQPLALRPLLESL 225

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q  + ++ E    +++    +L   +AD  R  QI   +L NA+ ++  G  + ++   
Sbjct: 226 VQRFSDQLLEEGPMLELDFSEELPLALADVDRTEQILVNLLGNAIRYTKHG-LIKIEVYT 284

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
             G     V + G  I E     VF RF        R   G G+GL+I    + L GG +
Sbjct: 285 HGGYLFVDVSDTGIGISEADLPHVFERFWRADRSRSRNYGGTGIGLAITRRLVELQGGEI 344

Query: 773 SISSSDEGVTTINCRIP 789
            +SS     +T    +P
Sbjct: 345 FVSSQLGKGSTFTFSLP 361


>gi|269926605|ref|YP_003323228.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790265|gb|ACZ42406.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 590

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 165/385 (42%), Gaps = 32/385 (8%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETID----HLSEGVAVFGPDGRIKLSNPAFRSLWK 468
           I ++  L   V+        +  Q    D     L+EG+     +G I   NPA   + +
Sbjct: 215 IAVYRALAHHVEARQITQRALDQQRTMTDVMVTSLAEGICALDKEGYITFMNPAACQMLR 274

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLE 527
              +++   + +  ++          +G D    +    + +  ++   T   L    ++
Sbjct: 275 CTLDKVRNKSFVELVS---------VEGHDNSLLVNVPLEGKIYRNDDCTFRTLDGGTIQ 325

Query: 528 YSIIPLP---NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            +    P   + + +   V   D     R            ++ +  ++  +S++LR+PL
Sbjct: 326 VACTSSPITLDGRIIGVIVAFRDMTEFRRL-----------EQAREEYLSLISHDLRTPL 374

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           + +IG + +LKT        ++ + V+ I      L  +V ++LD A+++AG +KL    
Sbjct: 375 SVVIGHSQILKTLLREKGLEREERNVDAIIGGGRQLTRMVENLLDRASLEAGAVKLKLQR 434

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + L   L +  + +    + + + + +    +  +   D  R+ ++   +++NA+ +S+ 
Sbjct: 435 VDLESWLPDAIERVTVPANRSRVHLVI---ERGCTLDVDVDRIERVLGNLVTNALKYSAP 491

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            + VI++A   + + I SVK+ G  I  +    +F ++    +RG+  G+GLGL I    
Sbjct: 492 ETDVIVRAKVSSNNLIISVKDQGPGIKPEDVPKLFQKYYRT-NRGRNEGLGLGLYISRLI 550

Query: 765 INLHGGHVSISSSDEGVTTINCRIP 789
           +  HGGH+ + S     +T +  +P
Sbjct: 551 VEAHGGHIWVESEPSKGSTFSFSLP 575



 Score = 44.5 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 22/155 (14%)

Query: 290 GIAIDVSKEITVNDQLTHTYEILH----NLTVAIAIFDQNRYLQFHNRSFVELWEIDLAF 345
            +A  V         L     +      +L   I   D+  Y+ F N +  ++    L  
Sbjct: 220 ALAHHVEARQITQRALDQQRTMTDVMVTSLAEGICALDKEGYITFMNPAACQMLRCTLDK 279

Query: 346 LATNPSNDELLEFLRSANKLPE-QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
           +      + +       + L    L  K ++ +             T+   +G T+ V  
Sbjct: 280 VRNKSFVELVSVEGHDNSLLVNVPLEGKIYRNDDC-----------TFRTLDGGTIQVAC 328

Query: 405 TSNP---RG---GTIWMFENLTVQVDLETKYNTLV 433
           TS+P    G   G I  F ++T    LE      +
Sbjct: 329 TSSPITLDGRIIGVIVAFRDMTEFRRLEQAREEYL 363


>gi|56420224|ref|YP_147542.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380066|dbj|BAD75974.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 457

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 5/250 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +  +  RA+      L    + ++ F+  +S+ELR+PLT + G+ D+ +   L  
Sbjct: 209 MKGNDELAQLGRAIQTLANDLAYLKQERSEFLASISHELRTPLTYVKGYADIARRPHLS- 267

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +++ Y+  I   +  +  +V D+ +LA ++    ++      L   L ++ + +   
Sbjct: 268 -EEQRANYMAIIYEEAEKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPA 326

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E ++ +     G + + + DRQR  Q+   +L NA  ++  G+TV +         + 
Sbjct: 327 FQEKSLSLVCQCPGSVMAAI-DRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQKQGIVI 385

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G+ IP +    +F RF        R   G GLGL+I +  +  HGG ++  S   
Sbjct: 386 AVSDEGTGIPPEDVPRIFERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQG 445

Query: 780 GVTTINCRIP 789
             TTI   +P
Sbjct: 446 KGTTILITLP 455


>gi|317130193|ref|YP_004096475.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475141|gb|ADU31744.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 468

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 4/243 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +    L    E L   D+++  FV +VS++LRSPLT+I GF   L    +     + 
Sbjct: 222 EVGQLGETLNYMAEELGSIDQMRKDFVANVSHDLRSPLTSIRGFLGALIDGTIPK--EEH 279

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y   +   +  L+NLV D+L +A ++A  + +  +T  L + L  +   +   + +  
Sbjct: 280 SKYFSIMKNETERLMNLVEDLLHMARLEANQIDIKPNTYNLTEQLRLIIAKMEPSLSKRR 339

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +++  +  +    AD  R+ Q+F  +L NA+ FS + S + +   +++     S+ + 
Sbjct: 340 VELELHCEEDV-FVYADENRMDQVFINLLQNALQFSHEDSKIEVNIEKESDVAKVSITDY 398

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G  I E+  K ++ RF        ++ G G+GLSIV+  I+LHG  + + S  +  TT  
Sbjct: 399 GPGINEEDLKYIWERFYKKDKARSKKTGAGIGLSIVKHIIDLHGTTIDVKSDVKEGTTFI 458

Query: 786 CRI 788
           C +
Sbjct: 459 CTL 461


>gi|255036012|ref|YP_003086633.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254948768|gb|ACT93468.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1084

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/486 (17%), Positives = 191/486 (39%), Gaps = 34/486 (6%)

Query: 322 FDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV 381
           +D    L   N     ++ +       +P        +   ++      +   + +I   
Sbjct: 481 WDLVSNLVIWNEQHFRIFGLSPQEAPVHPEL--FFRHIHPDDR---DRVYALLQRSIQED 535

Query: 382 YKSSETHKDTWHLPNGQTLHV-----IVTSNPRGGTI--WMFENLTVQVDLETKYNTLVK 434
            +     +      +G  L +     ++  N  G  +   +  ++T + + E   + +  
Sbjct: 536 VEFDTEFRAV--REDGVGLWISGYGRVMERNQSGPILMSGIMLDITARNESEAALHRIQA 593

Query: 435 VQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEE-NRLSPGTHIRNIAATCSRYYN 492
            QG  ++   +  +       R++  N     +    E   +     I  +    +    
Sbjct: 594 RQGAILESAKDYAIFTLDLGLRVRDWNSGAEHVLGYSEAEIIGKSGEIFFVPEDRAEGAP 653

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
           E +            ++ER  L+        S +     PL +        N+   ++  
Sbjct: 654 EYEKNKAIQE--GRAENERWHLRSDGSRFYGSGIT---SPLLDEAG-----NLIGLLKVM 703

Query: 553 RALTEKN---EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R LT +    EAL+ AD+ K+ F+  +++ELR+PL  +     LLK ++    +++ S  
Sbjct: 704 RDLTMQKQTDEALKIADKRKDEFLAMLAHELRNPLATVRNGISLLKVTRQN--DAQMSDV 761

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ +   +T L+ +++D+LD++ V  G ++L    + +  L+N   +SI ++       +
Sbjct: 762 VDMMDRQATHLVRMIDDLLDVSRVTQGKIQLQLERLDMAALINSAVKSIRSQYEARRKVL 821

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
            V +         D  RL Q+ + +L+N++ ++     V +     +G+ +  V++NG  
Sbjct: 822 DVQTGFAKLIVEGDATRLSQVVTNLLTNSLRYTGDEGHVWVTLTSQDGEAVIRVRDNGIG 881

Query: 730 IPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINC 786
           +  +   SVF  FV   +     + G+G+GL+IV   + +HGG V   S      +    
Sbjct: 882 LTPEQQTSVFELFVQGDNSLARTQGGLGIGLTIVRQLVGMHGGRVEAKSPGIGMGSEFTI 941

Query: 787 RIPSKE 792
            +P  E
Sbjct: 942 YLPLLE 947


>gi|116052653|ref|YP_792968.1| kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|237651845|gb|AAM15532.2|AF482691_1 probable sensor kinase [Pseudomonas aeruginosa]
 gi|115587874|gb|ABJ13889.1| kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 931

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 145/381 (38%), Gaps = 36/381 (9%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTH 479
            +  LE             I      + V    D  + L NP  R               
Sbjct: 325 AKRRLEA-LKESEAFSRAVIQAAPVALCVLRRADAAVVLENPQARQWLGD---------- 373

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                       +E+   D    I  +F    K     LE  +   L  +  P       
Sbjct: 374 ------------SEAIAHDAPRWISQAFAGGVKCSGEELETEAGLHLHLNYTPTRYNGED 421

Query: 540 LTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + F   ++     R E  L         A+E K  F+  +S+E+R+PL  ++G  +LL  
Sbjct: 422 VLFCAFSEISARKRMEAELARAKSLADAANEAKTLFLATMSHEIRTPLYGMLGTLELLGR 481

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+ +Q+ Y++ I  SS+ LL L++D+LD++ ++AG + L        +L  EV Q
Sbjct: 482 TE---LSRQQAGYLKAIQHSSSTLLQLISDVLDVSKIEAGQLDLECVEFSPLELTEEVVQ 538

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
           S         +++      +L          + QI + +LSNA+ F+  G   V LKA+ 
Sbjct: 539 SFTGAAQAKGLQLYTCLSAELPLRMRGAAASIRQILNNLLSNAVKFTDNGYVNVHLKASV 598

Query: 715 DNGDFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGG 770
            + + +     V + G  I  +    +F  F           G GLGLSI +    L  G
Sbjct: 599 VDAECVMLTWQVNDTGMGINVEDQPRLFEPFYQIRRSEHPVAGTGLGLSISQRLAQLMNG 658

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + S     ++ + R+P +
Sbjct: 659 SLKLVSELGLGSSFSLRLPLE 679


>gi|322420155|ref|YP_004199378.1| histidine kinase [Geobacter sp. M18]
 gi|320126542|gb|ADW14102.1| histidine kinase [Geobacter sp. M18]
          Length = 562

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 121/238 (50%), Gaps = 4/238 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           ALT  +  L+  D  +  F+ ++++ELR+PL+ I  ++++L T     + S Q ++++ I
Sbjct: 71  ALTLVHLKLKNIDRCRTVFLGNIAHELRTPLSGIRAYSEILLTYDDLDVPS-QREFLKII 129

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           +  S  +  +VNDIL+   ++AG +KL  + +  ++L+ E  +++        + ++   
Sbjct: 130 NDDSVRMTMIVNDILNSLKIEAGNLKLALNKVRSSELIEECIKAMRPMAVAKGLTLESSI 189

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                S  AD+ +++Q+   +++NA+ ++ +G  V +  A       F V ++G  I   
Sbjct: 190 TSDAISINADKNQVMQVLINLVNNAIKYTQQGG-VTVGVALKGRFAEFFVIDSGEGIFPA 248

Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             + +F+ F    +    +  G GLGLSI +  + +H G + + SS    +T    IP
Sbjct: 249 EQEKIFDEFYRVLDNVSNRPPGTGLGLSICKKIVEVHEGTIGVESSVGKGSTFRFTIP 306


>gi|213581536|ref|ZP_03363362.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 809

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 251 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 310

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 311 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 367

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 368 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 426

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 427 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 484

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 485 LKSVPGVGTCVSLVLPLQE 503


>gi|317471316|ref|ZP_07930675.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901209|gb|EFV23164.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 640

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 14/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  RAE A     +   KA+  K+ F+  +S+E+R+P+  IIG T  L   +    ++K 
Sbjct: 113 EKNRAEEAF----KHAEKANLAKSEFLSRMSHEIRTPMNGIIGMT--LIAGQNLQNSAKI 166

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S  ++ IS SS  LL L+ND+LD++ +++G +++          +  +      +     
Sbjct: 167 SDCLKKISLSSKHLLALINDVLDMSKIESGKIEIKNEVFDFKVFIESLTTVYYAQAVSKK 226

Query: 667 IRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI--- 720
           +    I  G++    + D  RL QI + +LSNA+ F+ +G  V L+    R+  + +   
Sbjct: 227 LNFDTILIGEVREELIGDSLRLNQIITNLLSNAIKFTPEGGNVTLRIQELREEDELVWFR 286

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  +  +  + +FN F    +    +  G GLGLSI   F +L GG + ++S  
Sbjct: 287 FQVEDTGCGVAPENMEKIFNAFEQETSDVAQKYGGTGLGLSISRRFASLMGGSLILNSEV 346

Query: 779 EGVTTINCRIPSK 791
              +     IP +
Sbjct: 347 GKGSVFTADIPFQ 359


>gi|294667000|ref|ZP_06732228.1| two-component system sensor protein [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292603217|gb|EFF46640.1| two-component system sensor protein [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1150

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 167/404 (41%), Gaps = 21/404 (5%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD R+   N
Sbjct: 605  RLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWN 664

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              ++ L+   +  L  G  + ++    +      +G D+   I       R       E 
Sbjct: 665  RRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFER 723

Query: 521  L--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-----------DE 567
                  V+E     LP    + ++ ++TD  RAERAL + NE L +             +
Sbjct: 724  TRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSREAELAQQ 783

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K  F+  +S+++  PL     F   L+ S     N +Q    E + AS      L++ +
Sbjct: 784  SKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAAEELLDGL 841

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD++ +DAG ++        + L++E+    A       ++++V    +     +DR+ L
Sbjct: 842  LDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVAASRGLQLQVHV--RAIWVRSDRRLL 899

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
             ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F  F     
Sbjct: 900  RRVMQNFLANALRYTRQG-RIVLGMRGRGQQVELQVWDTGPGIPEHHMRQIFEEFRRYQQ 958

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 959  PFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1002



 Score = 86.1 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 562 AHRAFVDQASLLERELQPTVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 621

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 622 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 681

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 682 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 740

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 741 GGYVTSYNDITDYKRAERALLDANENLEQ 769


>gi|206562088|ref|YP_002232851.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038128|emb|CAR54076.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 1010

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 154/374 (41%), Gaps = 31/374 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPD-GRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
               +     ++    +     G+ +  PD  ++ L N       +      +    +  
Sbjct: 400 RRSRRVFESERMSRTIVATAPFGIGLVSPDTHQVLLRNRMLELYDRE-----AGAPPLHE 454

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
                 R + ++    L   +  + DD R     T +LL + V    +        + +F
Sbjct: 455 RLLARYREHADASPAQLDVELPVTLDDGR-----TRDLLVNFV---RVRYKGKDALLCSF 506

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            ++T    A+RAL          +  K++F+  +S+E+R+PL  ++G  +LL        
Sbjct: 507 SDITTRADAQRALDSA-------NRAKSTFLATISHEIRTPLNAMLGNLELL---DKAPD 556

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            S+Q   +  +++++ +LL+++N++LD+  ++A  M L  +   +++L+ +V        
Sbjct: 557 PSRQKPRLHAVTSAARMLLDMLNNVLDMTKIEADRMTLEATGFRIDELMRDVADLFEPVA 616

Query: 663 HENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--- 718
               I +++  D  +  +++ D  R+ QI   ++SNA+ F+ +G+ V L  +   G    
Sbjct: 617 GARGIALRIDVDPAVTHTYLGDPMRVRQIAVNLVSNAIKFTDRGA-VALSVSASGGGATP 675

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V ++G  +  D    VF  F        RR  G G+GL++        GG +   S
Sbjct: 676 VTIRVSDSGIGMTADQLAHVFEPFAQADESIARRFGGTGIGLALSYKLAESMGGRIEADS 735

Query: 777 SDEGVTTINCRIPS 790
                +T    +P 
Sbjct: 736 VPGVGSTFVVTLPL 749


>gi|71906060|ref|YP_283647.1| PAS [Dechloromonas aromatica RCB]
 gi|71845681|gb|AAZ45177.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 787

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 146/394 (37%), Gaps = 40/394 (10%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRS-LWKTEENRLSPGTHIRNIAATCSR 489
            L  +     D++ + +     +GR   +N A  S L    +     G      A     
Sbjct: 239 RLAAMLRLMCDNVPDMIWAKDLEGRYLFANQAMASCLLCASDTGEPVGKTDLFFAERERA 298

Query: 490 YYNESDGWDLFAA--IITSFDDERKSLQGTLELLSDSVLEYSII-----PLPNA-----Q 537
            + E   W  F    + T  +  R+ +    E + +    Y  I     P  +       
Sbjct: 299 AHPEDSQWFTFGEQCLATDLETLRRGVPSAFEEMGNVRGRYLCIDAFKAPFVDGSGQVIG 358

Query: 538 TMLTFVNVTDSVRAERALTEKNEALR------------------KADEIKNSFVQHVSYE 579
           T+ +  ++T+  + ER L +  E L                    A+  K++F+ ++S+E
Sbjct: 359 TVGSARDITERKQVERELAKYRENLEGVVRERTRELTVAKDLAETANRAKSAFLANMSHE 418

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I G   L++      ++ KQ + ++ I A+   LL +++D+L L+ ++AG M 
Sbjct: 419 IRTPLNAITGMAYLMRR---DGVSEKQGERLDRIDAAGQHLLEIIHDVLSLSQIEAGRMT 475

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           L    + L+ +     + +A +     + ++            D  RL Q     L NA+
Sbjct: 476 LEAKPLDLSVVCTGALEVLADEARRKGLSLRQEFGELPVGLHGDAVRLRQSLLNYLGNAV 535

Query: 700 DFSSKGSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RG 753
            F+  GS V+    L          F V ++G  +  +    +F  F        R   G
Sbjct: 536 KFTEAGSVVLRCHELSRNDSGHLIRFEVVDSGPGMSPESRTQLFQPFHQVDSSSTRVHGG 595

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            GLGL I      L GG     S+    +     
Sbjct: 596 TGLGLVITRRLAQLMGGDAGCDSTPGVGSRFWFT 629



 Score = 45.7 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 24/144 (16%)

Query: 193 SVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRM 252
           ++ +++ D++  ++W +D  G  L+AN +   +         + +G++   F E  +   
Sbjct: 242 AMLRLMCDNVPDMIWAKDLEGRYLFANQA-MASCLLCASDTGEPVGKTDLFFAERERAAH 300

Query: 253 ISSSA----LEKNFCETVSTLEHGNNKSYK-------------------IVRVLNSFGEA 289
              S      E+     + TL  G   +++                   +       G  
Sbjct: 301 PEDSQWFTFGEQCLATDLETLRRGVPSAFEEMGNVRGRYLCIDAFKAPFVDGSGQVIGTV 360

Query: 290 GIAIDVSKEITVNDQLTHTYEILH 313
           G A D+++   V  +L    E L 
Sbjct: 361 GSARDITERKQVERELAKYRENLE 384


>gi|303327857|ref|ZP_07358297.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302862218|gb|EFL85152.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 617

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 149/385 (38%), Gaps = 25/385 (6%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN-------PAFRSLW 467
           M EN+   V         ++     +D +S+GV V GP G I+  N       PA  +  
Sbjct: 226 MAENIEEHVRAAADQTAQLE---SILDTMSDGVLVLGPHGHIRRCNRALAGEFPAAATAQ 282

Query: 468 KTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLE 527
             +   + P   ++            S      +   +  D   +         +  V  
Sbjct: 283 GAQVVEIIPSPELQKAVDEVLAAPAPSSASQSASHDASRSDSGSEPGDE-----NGRVQR 337

Query: 528 YSIIPLPNAQTMLTFVNVT---DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           +  + LP+ Q M   ++     DS     A+      L + + ++  FV +VS+ELR+PL
Sbjct: 338 HLHLTLPSGQVMSVCLSRPAGPDSHLGAVAVFHDITELVRLERVRRDFVANVSHELRTPL 397

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T I G+ + L +      + +  ++ E I  +   L  +V D+L LA ++     L  + 
Sbjct: 398 TAIQGYAETLISL---DTSPECRRFGEIILKNGAYLTRMVGDLLALARLEGKTGSLELAP 454

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
               + L + K      +   N+ + V    +    +A    L Q+F  +L NA  ++ +
Sbjct: 455 TDPREALAQAKGMCREVLERRNLHLNVDMPEQ-CRVMASLPHLAQVFRNLLENACRYAPE 513

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
           G  + + A     + +F V ++G  IP      +F RF        +   GLGL+I +  
Sbjct: 514 GGNIRVTAHPVGNEVVFRVVDDGPGIPAADLDRIFERFYQVERHRGQASTGLGLAICKHI 573

Query: 765 INLHGGHVSISSSDEGVTT---INC 786
           +  HGG +   S  +  +T      
Sbjct: 574 VERHGGRIRAESPAQDGSTALVFTL 598



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 70/206 (33%), Gaps = 35/206 (16%)

Query: 291 IAIDVSKEI-TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A ++ + +    DQ      IL  ++  + +   + +++  NR+     E   A  A  
Sbjct: 226 MAENIEEHVRAAADQTAQLESILDTMSDGVLVLGPHGHIRRCNRALAG--EFPAAATAQG 283

Query: 350 -------------PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH--L 394
                         + DE+L     ++      +  +  ++       +   +   H  L
Sbjct: 284 AQVVEIIPSPELQKAVDEVLAAPAPSSASQSASHDASRSDSGSEPGDENGRVQRHLHLTL 343

Query: 395 PNGQTLHVIVT----SNPRGGTIWMFENLTVQVDLETKYNT-------LVKVQGETIDHL 443
           P+GQ + V ++     +   G + +F ++T  V LE             ++     I   
Sbjct: 344 PSGQVMSVCLSRPAGPDSHLGAVAVFHDITELVRLERVRRDFVANVSHELRTPLTAIQGY 403

Query: 444 SEGVAVFGPD------GRIKLSNPAF 463
           +E +            G I L N A+
Sbjct: 404 AETLISLDTSPECRRFGEIILKNGAY 429


>gi|266620607|ref|ZP_06113542.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288867785|gb|EFD00084.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 365

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 123/284 (43%), Gaps = 10/284 (3%)

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
           +FD   K L      +++      I          T  ++           +  E L   
Sbjct: 79  NFDRPIKKLSAAARQVAEGDFSVYI------PKRHTSNDMDYIDALFVDFNKMVEELGSI 132

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           + +KN F  +VS+EL++PL  I  +  LL T++   L  KQ +Y E I +S+  L +L+ 
Sbjct: 133 ETLKNDFAANVSHELKTPLAAIQNYAQLLGTTE---LTPKQQEYTERILSSTQRLTSLIY 189

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           +IL L  +++  +        L   L++          +  I  +   + +     AD +
Sbjct: 190 NILKLNKLESQKIHPKPEPYDLCRQLSDCAIGFEAIWEQKKINFEADMEDR-AVIEADEE 248

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            +  +++ +LSNA  F+  G TV L+   D    +  V + G  +  +M K +F++F   
Sbjct: 249 LMELVWNNLLSNAFKFTKSGGTVSLRQFSDEERIVTEVGDTGCGMTPEMMKHMFDKFYQG 308

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  G GLGL++V   + + GG ++++S++   T     +P
Sbjct: 309 DTSHSTEGNGLGLALVLRVLEMSGGTITVNSTEGKGTVFTVSLP 352


>gi|295690986|ref|YP_003594679.1| histidine kinase [Caulobacter segnis ATCC 21756]
 gi|295432889|gb|ADG12061.1| histidine kinase [Caulobacter segnis ATCC 21756]
          Length = 842

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/584 (17%), Positives = 205/584 (35%), Gaps = 39/584 (6%)

Query: 222 YKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVR 281
           ++  T+ +   F    G   +L     + R +      +      + L +   +  +I +
Sbjct: 124 FRAFTDADWARFMDRSGPDIRLMAGIERVRHLGQVGRWREAARLATELTNEAGREGEIAQ 183

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEI 341
            + +      +  +S               L ++  A  +   +    F  R    L++I
Sbjct: 184 PVLAELHQVHSYTLSDMGDKEGA-------LDHMARAAEL---DERDVFFIRKVERLYDI 233

Query: 342 -----DLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYK--SSETHKDTWHL 394
                DL  L        L     + +      +  TW   + +     + +  +    L
Sbjct: 234 AYTAADLGALDQARRFAALHHRWVANSG---NADLATWDRYLCAKIANLADQPRQVLDCL 290

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            + + L  +     R   + +    T Q  L         +Q   +  + + +       
Sbjct: 291 ADAKAL--VDRPERRLQVVMLGLRATAQAQLGQASAARADLQR--MQAIPDALGPRDLSA 346

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI---ITSFDDER 511
              L N                    R   A      N  +  ++ AA+   + +  DE 
Sbjct: 347 E-TLINAYIDQAEGRSAEAFRELDAWRKTEALRVSRQNARNVAEMSAALDGELRAKRDES 405

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-ERALTEKNEALRKADEIKN 570
           + L   + L    V   +II L  A  +   V      R   + L    E    A++ K+
Sbjct: 406 RRLAEQVRLSRSLVRASAIIALLLAVLVAGGVGWALHQRRGSQRLKGAQERAEAANQAKS 465

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
           +F+  +S+ELR+PL  ++G    L+T     L  +Q + ++ I  S   LL L+NDILDL
Sbjct: 466 AFLAVMSHELRTPLNGMLGLAQALRTE---DLTPQQREQIDLILDSGDTLLVLLNDILDL 522

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQ 689
           + ++AG +++  +T  L      +         E  + +    + +  G  + D  R+ Q
Sbjct: 523 SKIEAGKLEIAPTTGDLVGSCARLVGGYQPTAREKGVVLSFRLESEAPGPLMFDGVRVRQ 582

Query: 690 IFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
             + ++SNA+ F+++G   V L    ++         V + G  + ++    +F+ F   
Sbjct: 583 CLTNLVSNALKFTTEGKVEVGLACYPEDDGRVRVRLRVSDTGIGMSQETIAKLFSPFTQA 642

Query: 746 AHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
                R   G GLGL+I    + +  G + + S +   +     
Sbjct: 643 DASTTRNFGGTGLGLNITRRLVKMMHGEIKVESEEGRGSVFTIE 686


>gi|218128693|ref|ZP_03457497.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
 gi|217989148|gb|EEC55463.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
          Length = 1357

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 8/268 (2%)

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            V+ +  I +   +      ++   ++ ER      E  ++  E+K  F  ++S+ELR+PL
Sbjct: 795  VIAFISITIFIFRYFWLRKSMEAKLQMER---VDKERQKEVSEMKLRFFINISHELRTPL 851

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            T I+     +          +Q ++V+    ++  LL+LVN ++D    + G+  L    
Sbjct: 852  TLILAPVQEMLDKVSDRWLHRQLEHVQ---KNTNRLLHLVNQLMDYRRAELGVFNLKVRL 908

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             ++++++ +             I   + S+ +      D   +  I + +LSNA  ++ +
Sbjct: 909  NLIHNVVEKNFLFYERLAQRKRIAYNLSSNAEGREIFCDPDYMELIVNNLLSNAFKYTGE 968

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            G  + +    +N + +  VK+ GS IP D    +F RF    +  +  G G+GLS+V+  
Sbjct: 969  GKNITVTLKEENHELLLQVKDTGSGIPVDKQGKIFERFYQADN--EHLGSGIGLSLVQRL 1026

Query: 765  INLHGGHVSISSSDEGVTTINCRIPSKE 792
            + LH G + + S +   +T +  +P++E
Sbjct: 1027 VELHHGRIELESEEGVGSTFSIYLPTEE 1054


>gi|163849118|ref|YP_001637162.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222527091|ref|YP_002571562.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163670407|gb|ABY36773.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450970|gb|ACM55236.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 554

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 9/225 (4%)

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F+  +S+ELR+PL  I+G+  LL  S   +++   + Y+E I +S   LL L++D+LD A
Sbjct: 311 FLATMSHELRTPLNAILGYAQLLHLS--NAVSEPHADYLERILSSGRHLLTLISDVLDFA 368

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++ G ++L Y  + +  L+ +V          N+ ++       +GS   D +RL Q+ 
Sbjct: 369 RIEQGALELEYRQVAIAPLVEDVATMTLPLAQRNHNQVITCYPADIGSIETDDRRLRQVL 428

Query: 692 SKILSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             +L NA  F+ +G T+ L   R+         F V + G  IP D    +F  F     
Sbjct: 429 INLLGNAAKFTERG-TIRLNVVREQRHGIDGIRFDVIDTGIGIPRDKQDKLFKPFSQIDE 487

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGL++ +  +   GG + + S     +T    +P+
Sbjct: 488 SVTRRYEGTGLGLALSKQIVLALGGTIDVESDFGVGSTFTVWLPT 532


>gi|316935503|ref|YP_004110485.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315603217|gb|ADU45752.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 1122

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 115/255 (45%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    + +  L    EA   A+  K+ +V  +S+ELRSPL  I G+  LL+ 
Sbjct: 641 QTTLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               SL  +    +  +  S+  L  L++ +LD++ ++AG + L+   +   + L+++  
Sbjct: 701 D--NSLPPRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDEVRFGEFLDQLVG 758

Query: 657 SIATKMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +    +I               AD +RL Q+   +LSNA+ F+ +GS V       
Sbjct: 759 MFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNAIKFTQQGS-VQFIVHYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
           N      V++ G  I  D  + +F  F   A        G GLGL+I +    + GG ++
Sbjct: 818 NPVAELEVRDTGPGIHADDLERIFAPFERGALGAAQPHSGTGLGLTISKLLSGVMGGDLT 877

Query: 774 ISSSDEGVTTINCRI 788
           ++S+ +  +T   ++
Sbjct: 878 VTSTPDKGSTFRVKL 892


>gi|186682168|ref|YP_001865364.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186464620|gb|ACC80421.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 706

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 9/281 (3%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
            +EL+    +  S+  L N                  AL+    A  +   +K++F+   
Sbjct: 413 EMELIQSLNIHLSLAVLQNRLYHRERQQRLIVEMHNEALSHARAAAEEVSRLKSNFLAST 472

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL + + +  LLK       + +  +Y++    S+  L+ ++ND+LD+A ++ G
Sbjct: 473 SHELRTPLASTLNYLKLLKERLYEDED-ELREYIDGAYQSTQNLVTIINDVLDIAKIEDG 531

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
            + L+  T+ L  LL E  Q   +        I +  D ++ +  AD+ ++ Q+ + +L 
Sbjct: 532 RIALDLETVYLQQLLQE--QCFLSGAESRYKAIPLTLDCEIETVFADKIKVRQVMTNLLD 589

Query: 697 NAMDFSSKGSTVILKAARD--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRR 752
           NA  F+ +G  + ++A  D        SV + G  I  +  + +F+ FV           
Sbjct: 590 NAFKFTDEG-QIDVRAVVDSTGTMAQISVHDTGIGIEMENSEQLFSPFVQADGSAQRSYG 648

Query: 753 GVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPSKE 792
           G GLGL+I +  + L GG + + S       T+   +P  E
Sbjct: 649 GTGLGLTICKRLVELMGGKIWLESPGLGQGNTVTFTLPLNE 689


>gi|75759998|ref|ZP_00740065.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228899979|ref|ZP_04064217.1| hypothetical protein bthur0014_11890 [Bacillus thuringiensis IBL
           4222]
 gi|74492517|gb|EAO55666.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228859665|gb|EEN04087.1| hypothetical protein bthur0014_11890 [Bacillus thuringiensis IBL
           4222]
          Length = 466

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++HGG   I S  +  TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHGGQWKIKSEKDKGTTVIIKL 457


>gi|168263777|ref|ZP_02685750.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|194443927|ref|YP_002040646.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194402590|gb|ACF62812.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|205347616|gb|EDZ34247.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 920

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|119510843|ref|ZP_01629968.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119464522|gb|EAW45434.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 648

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 118/257 (45%), Gaps = 6/257 (2%)

Query: 537 QTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           Q       + + ++A    L    +  + A++IK+ F+   S+ELR+PL  II    ++ 
Sbjct: 354 QLAQAIDQMVERLKAWAEELEIAWKEAKTANQIKSQFLATTSHELRNPLNVIINCVRVVH 413

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                +   +  ++++    ++  LL ++N++LD++ ++AG + +    I L  +L EV 
Sbjct: 414 EGLCDNREEEI-EFLKRADDTAIHLLGIINELLDISKIEAGKLSVVKVPIDLRQILLEVI 472

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
              +  +    +++K      L    AD  +L Q+   I+ NA  F+ +GS + +     
Sbjct: 473 NLQSVNVQNKGLQLKTDLGTDLIPVEADAAKLKQVLINIIGNATKFTDEGS-IRIATISH 531

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               I S+ + G  I  D    +F  FV        +  G GLGL+I  + I L GG ++
Sbjct: 532 KFQVIVSITDTGLGIEPDQQHKLFRPFVMLDGGATRKVEGTGLGLAISRNLIELMGGTIT 591

Query: 774 ISSSD-EGVTTINCRIP 789
           + S+     TT+   +P
Sbjct: 592 LESAGINQGTTVKITLP 608


>gi|108759725|ref|YP_628511.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
 gi|108463605|gb|ABF88790.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
          Length = 508

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 127/283 (44%), Gaps = 10/283 (3%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
              +  L      Y   P   A+ + T  ++     AE+   ++  AL + D  K+ F+ 
Sbjct: 94  DKKVRGLDGGADAYLTQPFEGAELIATVKSLLRLRHAEQVARQRANALAEMDRRKDEFLA 153

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            + +ELR+PL  I+    +L+       + K+++    I   +  L  LV+D+LD++ + 
Sbjct: 154 MLGHELRNPLAAIMTAIGILERRPTS--DDKEARMRGIIQRQTNHLARLVDDLLDVSRIT 211

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
              ++L   ++ L  +L +V Q +        + + V          AD  RL Q+F+ +
Sbjct: 212 RDKVELRPGSVDLVPVLRQVLQIVQPMADSRGLGLDVSLPSGPLWLQADATRLEQVFTNL 271

Query: 695 LSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
           L NA+ ++  G  V L+A ++        +  VK++G  IP ++   +F  F        
Sbjct: 272 LDNAIKYTDAGG-VHLRAEQEGVGGAAQAVVRVKDSGIGIPPEVLPHIFELFAQADTSLE 330

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTTINCRIPS 790
             R G+G+GL++V   I LHGG V+  S+     +    ++P 
Sbjct: 331 RSRGGLGIGLTLVRKLIQLHGGEVTARSNGPGHGSEFVVKLPL 373


>gi|25010797|ref|NP_735192.1| sensory box histidine kinase [Streptococcus agalactiae NEM316]
 gi|76787924|ref|YP_329468.1| sensory box histidine kinase [Streptococcus agalactiae A909]
 gi|76798188|ref|ZP_00780439.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21]
 gi|77410782|ref|ZP_00787140.1| sensory box histidine kinase [Streptococcus agalactiae CJB111]
 gi|77413072|ref|ZP_00789273.1| sensory box histidine kinase [Streptococcus agalactiae 515]
 gi|23095151|emb|CAD46386.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562981|gb|ABA45565.1| sensory box histidine kinase [Streptococcus agalactiae A909]
 gi|76586451|gb|EAO62958.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21]
 gi|77160865|gb|EAO71975.1| sensory box histidine kinase [Streptococcus agalactiae 515]
 gi|77163161|gb|EAO74114.1| sensory box histidine kinase [Streptococcus agalactiae CJB111]
 gi|319744747|gb|EFV97089.1| sensor histidine kinase VicK [Streptococcus agalactiae ATCC 13813]
          Length = 449

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 142/374 (37%), Gaps = 35/374 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE + N L       + ++++GV      G+I + N   +  +    +       I ++
Sbjct: 87  NLEQEKNRL----ASILTYMTDGVLATDRSGKIVMINETAQQQFNLAYDEALSMN-IVDM 141

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             + S Y  +         ++   D+  + +   +    +      I  L          
Sbjct: 142 LGSGSPYSFQDLVSKTPEVVLNRRDENGEFVTLRIRFALNRRESGFISGLV--------- 192

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                     A++       K +  +  FV +VS+ELR+PLT++  + + L     G+LN
Sbjct: 193 ----------AVSHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDE---GALN 239

Query: 604 SKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +  +++     +  ++ +++D+L L+ +D  +  L+         +  +        
Sbjct: 240 EEVAPSFIKVSLDETNRMMRMISDLLSLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIR 299

Query: 663 HENNI-----RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           ++  +      I      K      D  ++ Q+   IL+NA+ +S  G  + +       
Sbjct: 300 NQKTVTGKVYEIVRDYPLKSIWVEIDTDKMTQVIDNILNNAVKYSPDGGKITVNLRTTKT 359

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I S+ + G  IP+     +F+RF         Q+ G GLGLSI +  +  H G +   
Sbjct: 360 QMILSISDQGLGIPKKDLPLIFDRFYRVDKARSRQQGGTGLGLSIAKEIVKQHKGFIWAK 419

Query: 776 SSDEGVTTINCRIP 789
           S     +T    +P
Sbjct: 420 SEYGKGSTFTIVLP 433


>gi|331268335|ref|YP_004394827.1| sensor histidine kinase [Clostridium botulinum BKT015925]
 gi|329124885|gb|AEB74830.1| sensor histidine kinase [Clostridium botulinum BKT015925]
          Length = 461

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 112/234 (47%), Gaps = 3/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               ++L + +E +  F+ +VS+ELRSP+T+I GF   +    +     K++ Y+     
Sbjct: 225 NSMAKSLEEVEENRRVFISNVSHELRSPITSIKGFIGGILDGVIPK--EKENYYLSVAYE 282

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L  L+ND+LDL++++AG   LN     +N+++        T +    I ++V  D 
Sbjct: 283 EIQRLTRLINDLLDLSSIEAGKFVLNVKEEDINEIIRLSIIKFETVIKSKKINVEVWLDD 342

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +  S + DR +++Q+ + ++ NA+ +  +   + ++          SV N+G +I ++  
Sbjct: 343 ERLSVLVDRDKIIQVITNLIDNAIKYGKEEGNIEIRTKVKGQKVFVSVYNDGPNISKEDG 402

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K +++RF         +   GLGLSIV   +  HGG +   + +         +
Sbjct: 403 KYIWDRFYKGDKSRTLKVSTGLGLSIVRRIVTQHGGDIWFENKENKGVIFTFTL 456


>gi|322615122|gb|EFY12045.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619965|gb|EFY16838.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622276|gb|EFY19121.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322632857|gb|EFY29601.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636652|gb|EFY33355.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322650253|gb|EFY46667.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655827|gb|EFY52129.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322665281|gb|EFY61469.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669538|gb|EFY65686.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673464|gb|EFY69566.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677392|gb|EFY73456.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679945|gb|EFY75984.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687417|gb|EFY83389.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192370|gb|EFZ77601.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198611|gb|EFZ83712.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202302|gb|EFZ87348.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208657|gb|EFZ93595.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323217634|gb|EGA02349.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323218982|gb|EGA03492.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323223663|gb|EGA07973.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323232659|gb|EGA16755.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240303|gb|EGA24347.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245920|gb|EGA29908.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252484|gb|EGA36331.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255187|gb|EGA38966.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260066|gb|EGA43691.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267170|gb|EGA50655.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271507|gb|EGA54928.1| two component system sensor kinase SsrA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 920

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|254826317|ref|ZP_05231318.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|293595558|gb|EFG03319.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194]
          Length = 459

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 133/284 (46%), Gaps = 15/284 (5%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---------ALTEKNEALRKADEI 568
           L L+S   +   ++ L NA   +   N   +    R         + T+    L+K++  
Sbjct: 179 LVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEIGQLADSFTKMASELKKSEAS 238

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           +  FV +VS+EL+SPLT++ GF  LL +  L     +Q++Y+  +S  +T L +L   +L
Sbjct: 239 RQEFVANVSHELQSPLTSMQGFARLLGSGTL--TEKEQAEYLTVLSEETTRLSSLTKQLL 296

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
            LA++D          + L++   ++ Q       E  + I +  D    ++  D + L 
Sbjct: 297 TLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINL--DLADVNYTGDAELLY 354

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           Q++S +L+NA+ F+ +G  + +            V+++G  I ++    +F+RF      
Sbjct: 355 QVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGIGKEDMAKIFDRFYKANES 414

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             R     GLGLSI +  I LH G +++ SS E  TT   ++P 
Sbjct: 415 RTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458


>gi|148993836|ref|ZP_01823238.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489054|ref|ZP_02713253.1| sensor protein YycG [Streptococcus pneumoniae SP195]
 gi|194398370|ref|YP_002037827.1| histidine kinase [Streptococcus pneumoniae G54]
 gi|147927661|gb|EDK78686.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572355|gb|EDT92883.1| sensor protein YycG [Streptococcus pneumoniae SP195]
 gi|194358037|gb|ACF56485.1| histidine kinase TCS02 [Streptococcus pneumoniae G54]
 gi|332073564|gb|EGI84043.1| sensory box protein [Streptococcus pneumoniae GA17570]
          Length = 449

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 146/380 (38%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +      +  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +  +        + ++L   I  S +    S     E L+  V  +++I   
Sbjct: 135 --------LNRSILELLKIEENYELRDLITQSPELLLDSQDINGEYLNLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALCETVAP--DFIKVSLDETNRMMRMVTDLLHLSRIDNATSLLDVELINFTAFITFI 292

Query: 655 KQSI-ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                  K  E   + +++ D  + S     D  ++ Q+   IL+NA+ +S  G  + ++
Sbjct: 293 LNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVR 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                   I S+ ++G  IP+     +F+RF        R   G GLGLSI +  I  H 
Sbjct: 353 MKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|307823178|ref|ZP_07653408.1| multi-sensor signal transduction histidine kinase [Methylobacter
            tundripaludum SV96]
 gi|307735953|gb|EFO06800.1| multi-sensor signal transduction histidine kinase [Methylobacter
            tundripaludum SV96]
          Length = 1161

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 139/789 (17%), Positives = 294/789 (37%), Gaps = 89/789 (11%)

Query: 45   IRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRID 104
            I +R    + + ++   L E        +  L        VW   +E   I+G L+  + 
Sbjct: 403  ISERKQAEEALRQSRKELQEAQRIAHMGNWQLDMTTHHA-VWS--EELYHILG-LNPELP 458

Query: 105  IPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE-----TQNDCAI---KIE 156
            +P        F        + +LS A    ++ G  ++L  E       +   +   +  
Sbjct: 459  VPGYTEHHQFF----TPESWERLSAAMLHTQETGGPYELELEMVRAGGTHGWMLARGEAM 514

Query: 157  GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
               SG+     I+ L G+  +++E     + L+      K + D      W  D  G++L
Sbjct: 515  RDGSGA-----IVGLHGVALDISERKQAERVLNQ----LKAMIDISLDGFWIVDLEGNVL 565

Query: 217  WANISYKKNTETEGIVFQKAIGESRKLFKE--EIKKRMISSSALEKNFCETVSTLEHGNN 274
              N +Y K +       +       +  +E  +IK  M  + A+     ET    ++G+ 
Sbjct: 566  QVNEAYAKISGYSVDELEGMHASQLEAIEESEQIKAHMAKAVAMGYEQFETRLLHKNGHT 625

Query: 275  KSYKIVRVLNSFGEA--GIAIDVSKEITVNDQLT----HTYEILHNLTVAIAIFDQNRYL 328
             + ++        +       D++K   + D+L         I+    V +A+ D++  +
Sbjct: 626  ITIEVSATFLPEFQQFCVFCRDITKRKRMEDELKASELKFRSIIEACPVPMALNDEHLNI 685

Query: 329  QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
             F N +FV+ +   +  +   P+  +  +        P+  +++ W E  +         
Sbjct: 686  SFLNPAFVQTFGYSVNDI---PTLADWRQKA-----YPDP-DYRHWVETAWQAVLEKANQ 736

Query: 389  KDTWHLP--------NGQTLHVIVTSNPR-----GGTIWMFENLTVQVDLETKYNTLVKV 435
            + T  LP        N +   V++T+        G  + +  ++T +  +E K+N     
Sbjct: 737  EQTECLPMEADIHCKNNRIKTVLLTAATIHHSFTGEHLVILYDITPRKQIEAKFNA---- 792

Query: 436  QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
                     EG+  +     I  +N A  +++  +   L  G +I  +     +  ++ D
Sbjct: 793  ---IFAASVEGIITYDMSDVIVSANAAVEAIFGYKPEDLV-GCNINKLMPASPKAMSDCD 848

Query: 496  GWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERAL 555
                  +I    + E     G+   L  S+ E+SI      +   T +    S+R  R  
Sbjct: 849  SSQAAESIGQIQEIEGIHKDGSAVPLDLSIAEFSI----ENEHYFTHIVRDVSLRKHRE- 903

Query: 556  TEKNEALRKADEIKN-----SFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLN-SKQSQ 608
             +  E L +   +            +++E+  PL  I  +T + L    +G  + +K ++
Sbjct: 904  QQDKEHLDELAHVTRLGLMGEMASGIAHEVNQPLAAISSYTQVSLNLINVGHPDLAKLAE 963

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             +      +     +++ + +     A       ST  LN L+++       ++ +NNIR
Sbjct: 964  ILYKTQQQALRAGRIIHRMREFVKSHAKQ----RSTADLNTLIHDAVGLCIDELKQNNIR 1019

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-----SSKGSTVILKAA-RDNGDFIFS 722
            +    +  L S   D+ ++ Q+   ++ N+++      S +   + + +    N      
Sbjct: 1020 LTFELENNLPSISVDQIQIEQVLINLIRNSVEALQNLSSERQRHLTIHSHLVPNNVIRVR 1079

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            VK+NG  + ED  + +   F       +  G+G+GLSI  S I  H G +  +S     T
Sbjct: 1080 VKDNGPGLDEDQKQQILTPFY----TTKSDGMGMGLSISRSLIEAHEGTLHFNSKPGKGT 1135

Query: 783  TINCRIPSK 791
            T    +P++
Sbjct: 1136 TFYFTLPTQ 1144



 Score = 38.4 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 7/173 (4%)

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYN----TLVKVQGET---IDHLSEGVAVFGP 452
           L VI  +  R     +   +  +   E        TL K    T   +D   +G+     
Sbjct: 118 LSVIPRALSRPSAAQLQAEIEQRKTAEKALRIANVTLQKNIARTQLLLDSALDGIVSMDH 177

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
            G +   N     ++     +         I     R  +        A   ++    R 
Sbjct: 178 HGNVTGWNAQAEHIFGYSSEQALGREMAELIVPPAYREKHRQGLSRFLATGTSNIIGTRL 237

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
            + G     S+  +E +I  L           + D            E+  + 
Sbjct: 238 EITGLRADASEFPMELTIGALKQKNNYFFSSYIRDISERRIIEDALRESEYRW 290


>gi|118590844|ref|ZP_01548244.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
 gi|118436366|gb|EAV43007.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
          Length = 774

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 123/264 (46%), Gaps = 13/264 (4%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           Q  +         RA     +  EA    ++ K++F+  + +E+R+PL  I+G  +LL  
Sbjct: 222 QVRIVKQTREGMTRAAAEFEKAYEAAEAGNKAKSAFLATIGHEIRTPLNGILGMAELLAQ 281

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L +++S YV  I+ S   LL ++N+ILD A ++ G  +       L+DL+ +   
Sbjct: 282 K---PLPAEESGYVRTITRSGRALLEMINEILDYAKIEYGSQQSEEIIFRLDDLVRDTAA 338

Query: 657 SIATKMHENNIRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            +  ++ E N  +K+  D  L      +D  RL +I   +LSNA+ F+  GS V L+   
Sbjct: 339 VVEGQVLEQNNDLKLHIDPALDGAFIKSDPTRLKRILLNLLSNAVKFTENGS-VWLEVTA 397

Query: 715 DNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINL 767
            N      +   SV+++G  I  D  K +F  F        RR  G GLGL+I +  +  
Sbjct: 398 GNVTDETLELNVSVRDSGIGIASDAQKQLFTAFHQVDSSISRRFGGTGLGLAICKQIVEA 457

Query: 768 HGGHVSISSSDEGVTTINCRIPSK 791
             G + +SS+     T +  +P +
Sbjct: 458 MQGTIGVSSTPGEGATFSFTVPVQ 481


>gi|32481649|gb|AAP84163.1| kinase sensor protein of two component regulatory system
           [Pseudomonas aeruginosa PA14]
          Length = 931

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 145/381 (38%), Gaps = 36/381 (9%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTH 479
            +  LE             I      + V    D  + L NP  R               
Sbjct: 325 AKRRLEA-LKESEAFSRAVIQAAPVALCVLRRADAAVVLENPQARQWLGD---------- 373

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                       +E+   D    I  +F    K     LE  +   L  +  P       
Sbjct: 374 ------------SEAIAHDAPRWISQAFAGGVKCSGEELETEAGLHLHLNYTPTRYNGED 421

Query: 540 LTFVNVTD---SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + F   ++     R E  L         A+E K  F+  +S+E+R+PL  ++G  +LL  
Sbjct: 422 VLFCAFSEISARKRMEAELARAKSLADAANEAKTLFLATMSHEIRTPLYGMLGTLELLGR 481

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+ +Q+ Y++ I  SS+ LL L++D+LD++ ++AG + L        +L  EV Q
Sbjct: 482 TE---LSRQQAGYLKAIQHSSSTLLQLISDVLDVSKIEAGQLDLECVEFSPLELTEEVVQ 538

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR 714
           S         +++      +L          + QI + +LSNA+ F+  G   V LKA+ 
Sbjct: 539 SFTGAAQAKGLQLYTCLSAELPLRMRGAAASIRQILNNLLSNAVKFTDNGYVNVHLKASV 598

Query: 715 DNGDFIF---SVKNNGSSIPEDMCKSVFNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGG 770
            + + +     V + G  I  +    +F  F           G GLGLSI +    L  G
Sbjct: 599 VDAECVMLTWQVNDTGMGINVEDQPRLFEPFYQIRRSEHPVAGTGLGLSISQRLAQLMNG 658

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + S     ++ + R+P +
Sbjct: 659 SLKLVSELGLGSSFSLRLPLE 679


>gi|325523296|gb|EGD01650.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia sp. TJI49]
          Length = 778

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/381 (25%), Positives = 170/381 (44%), Gaps = 28/381 (7%)

Query: 425 LETKYNTLVKVQG-ETIDHL-----SEGVAVFGPDG-RIKLSNPAFRSLWKTEENRLS-P 476
           L   Y    +    E ++HL       G+ +   +   I ++NP  R++          P
Sbjct: 48  LSRIYAEASRALDTEMLNHLLVHATPVGLCIVRRENLEIIVANPIARTVMGLRITENQLP 107

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP-N 535
           G  I     +     +++DG  +F    T    +R  L           +E +  P   N
Sbjct: 108 GELIGAFEKSLQGVQSDADGSRIFQFPFTLSRPKRPPLH----------IEITYAPAKLN 157

Query: 536 AQTMLTF--VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            Q +     +++T   +AE  L E       A + K +F   +S+E+R+PL++++G  +L
Sbjct: 158 KQDVFFCAVIDMTSHHQAEILLREAKLTSDAAAKAKVAFFASMSHEIRTPLSSLVGNIEL 217

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           +     G L  +Q   V+ +  S+  LL +VND+LD + +D G + L      + +LL +
Sbjct: 218 VAR---GPLAPEQQARVQAMQTSARGLLQIVNDVLDFSKIDVGELSLMEEWCSVVELLEK 274

Query: 654 VKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           + QS A    +  +    + D  + S  + D  R+ QI + +LSNA+ F+  G  ++L+A
Sbjct: 275 LAQSHAPLAVQQGLMFYTVFDRDIPSRLLFDPIRVSQIVNNLLSNALKFTPSG-KIVLRA 333

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGG 770
           +   G  + SV ++G  IPE++ + +F  F         Q RG GLGLSI      L  G
Sbjct: 334 SWGGGVLVLSVTDSGIGIPEELKQRLFVPFSQGDSNRLAQARGTGLGLSICARLCELMKG 393

Query: 771 HVSISSSDEGVTTINCRIPSK 791
            + + S+    T I   +P K
Sbjct: 394 RIRLDSAVGVGTRITVELPLK 414


>gi|120601365|ref|YP_965765.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561594|gb|ABM27338.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1080

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 10/249 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +            E   +  +    F+  +++E+R+P+T IIG  D+   S  G L  +
Sbjct: 243 MEVSERTAEFVGARERAERESKAMADFLAAITHEVRTPMTGIIGLLDI---SLRGQLEPR 299

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +++E + +SS  LL+++N +LD + ++AG +++      L + + +V       + E 
Sbjct: 300 LREHLEIVRSSSHALLDVINGVLDFSRIEAGKLRIERIPFALRESVEDVLDLFRAHLAER 359

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FI 720
           ++ + +     L      D  RL Q+   I+ NA  F+ +G  V+  +    GD      
Sbjct: 360 DVALVLDMASDLPCKVAGDPTRLRQVLVNIVGNAFKFTEQGEIVVRISHERQGDGSVLLR 419

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F+V++ G  IP +  K +F  F         +  G GLGL+I    + L GG + + S+ 
Sbjct: 420 FAVRDTGVGIPAEARKRLFEMFSQADASVARRFGGSGLGLAIARELVRLMGGSIEVDSTP 479

Query: 779 EGVTTINCR 787
              T     
Sbjct: 480 GRGTVFRFT 488


>gi|168239276|ref|ZP_02664334.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194738250|ref|YP_002114407.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|204927498|ref|ZP_03218699.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194713752|gb|ACF92973.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197288021|gb|EDY27408.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322840|gb|EDZ08036.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 920

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|303233927|ref|ZP_07320576.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Finegoldia magna BVS033A4]
 gi|302494852|gb|EFL54609.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Finegoldia magna BVS033A4]
          Length = 431

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 113/256 (44%), Gaps = 4/256 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +      N  +  R    L    + + K +++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 171 NMEVRAKENNTDEIGRLGMTLNLLTDNINKKEQLKNEFISSVSHELRTPLTSIKGWAQTL 230

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K        +     ++ I +    L  +V ++LD +   +G + +      L +L   +
Sbjct: 231 KYDPSDLETTTMG--IDIIDSECDRLTTMVEELLDFSRFTSGRISIVKRKQNLIELAEHI 288

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           K  +  K+    I + +  +        D  R+ Q+F  IL NA+ F+    T+I+   +
Sbjct: 289 KNQLLPKVRSKGIDLILNYESPELIATFDEDRIKQVFINILDNAIKFTPDKGTIIINIEK 348

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                  S+ + G  I  +  + V  +F   ++      VGLGLSI E  + LH G + I
Sbjct: 349 TEKFVEVSIIDTGIGISFEEIELVTGKFYKGSNSNSH--VGLGLSICEEIVKLHKGELMI 406

Query: 775 SSSDEGVTTINCRIPS 790
            S  +  TT++  +P 
Sbjct: 407 KSKIDEGTTVSFTLPL 422


>gi|300172952|ref|YP_003772118.1| histidine protein kinase sensor protein [Leuconostoc gasicomitatum
           LMG 18811]
 gi|299887331|emb|CBL91299.1| histidine protein kinase, sensor protein ' [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 451

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 163/394 (41%), Gaps = 28/394 (7%)

Query: 402 VIVTSN-PRGGTIWMFENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
           V+   N P    I  F  L   +    +     V      +  L  GV        I + 
Sbjct: 81  VLTEPNSPHYDLIHQFNTLQNYIKQTQRTAQRDVTNYQSLLASLPVGVINVNRRHIIDVF 140

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE 519
           N     L   ++ ++     +     T S    ++         I +       + G ++
Sbjct: 141 NTTAADLLGVQQPKIPIAESLVIKQFTLSELMTQTFNTQHNQQSILNLQ-----INGEVK 195

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
               S L Y    L +A+ M+   ++T  ++ ER              +++ F+ + S+E
Sbjct: 196 QYEVSTL-YHQGDLKHAEVMIIIYDLTSVLQIER--------------MQSDFLANASHE 240

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++PLT I GF + L+    G   + + Q+++ ++  S  L +LV DIL L+ V      
Sbjct: 241 LKTPLTAITGFVETLQ-GPAGEDPNTRKQFLKIVADESERLSSLVIDILSLSRVKQKNDA 299

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
           ++ + +++ ++++E  Q I T     +I  K             +  L  I   ++ NA+
Sbjct: 300 VD-TKLIIKNVVDEQWQHIKTMAATKHITFKNNVSQNF-VVHGLKTDLETILQNLIVNAV 357

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGL 756
            ++ +G  V +   +D+  +  ++K++G  IP++    +F RF       QR    G GL
Sbjct: 358 KYNKQGGDVTVSVYKDHQHWQINIKDSGIGIPKNQQSRIFERFYRGDESRQRTIANGTGL 417

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GL+IV   ++ H G V ++S     TTI+  +P 
Sbjct: 418 GLAIVNEIVSKHNGEVKVNSQVGVGTTISVTLPL 451


>gi|23016230|ref|ZP_00055988.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 566

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 178/479 (37%), Gaps = 27/479 (5%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           D ++   F + SF  +  I    L    S D + E +        +++   W+ +I  + 
Sbjct: 103 DADQRFTFFSSSFETVMNITSDDLLGKRSWDIVSERM--------EIDSDQWQAHIADLT 154

Query: 383 KSSETHKDTWHLPNG--QTLHVIVTSNPRGGTIWMF-------ENLTVQVDLETKYNTLV 433
                    + L +G  +   + V   PR     +F        ++T  V+   + + L 
Sbjct: 155 AQRPFRDFKYWLEDGAGRARWIKVNGLPRFDEDGVFIGYRGTGSDITAAVENAHRMHMLN 214

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNE 493
           +     ++     + +   +  I+  N AF  +     + +         +        E
Sbjct: 215 R----AVEQSPVSIVITDLNADIQYVNSAFLRVTGYSMDEVIGHNPRFLKSDLTPPAVFE 270

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
           +    L        +   +   G L     S+   S I       +    ++T+   A  
Sbjct: 271 AMWAALTVGDKWEGELVNRRKTGELYWEMASIQPISNIEGNVTNYLAIKSDITEQKSAAA 330

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E  E LR+++E    F    S++LR PL  I  +  LL+     S +     +  + 
Sbjct: 331 KLAELVEELRRSNEELEQFAYVASHDLRQPLRMISAYLGLLERKLSASFDQDARDFFGFA 390

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L  ++ D+L+ + +  G +    + + L + ++   + +   + E+  +  V+ 
Sbjct: 391 VDGARRLDRMIVDLLEYSRI--GRITTPMAPVPLGEAVSNALRYLEVAIAESKAQ--VLV 446

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIP 731
              L +   D   L+++F  ++ NA+ +  +G    + +     +G+++  VK+NG  I 
Sbjct: 447 PDILPTISGDGGELVRLFQNLIGNALKYMPEGRRPRIEVFCRDGDGEWVVGVKDNGIGIA 506

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            D  K VF  F     R Q  G G+GL++       HGG + + S     +T     P 
Sbjct: 507 ADDLKRVFGIFQRLVAREQYEGTGIGLAVCRKIAEHHGGRIWVESECGLGSTFLIAFPK 565



 Score = 75.0 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 137/420 (32%), Gaps = 54/420 (12%)

Query: 157 GRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL 216
           GR  G+        +  +  E    +L    +      ++   ++     W  D      
Sbjct: 50  GRAEGAALDTLRAEMTALRKERDRLSLLADVVKESSERYREYSEAAADWFWESDADQRFT 109

Query: 217 WANISYKKNTETEGIV-----FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH 271
           + + S++                  + E  ++  ++ +  +   +A ++ F +    LE 
Sbjct: 110 FFSSSFETVMNITSDDLLGKRSWDIVSERMEIDSDQWQAHIADLTA-QRPFRDFKYWLED 168

Query: 272 GNNKSYKIVRVLNS--------FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD 323
           G  ++  I               G  G   D++  +    ++      +    V+I I D
Sbjct: 169 GAGRARWIKVNGLPRFDEDGVFIGYRGTGSDITAAVENAHRMHMLNRAVEQSPVSIVITD 228

Query: 324 QNRYLQFHNRSFVELWEIDLA--------FLATNPSNDELLEFLRSANKLPEQLNWKTWK 375
            N  +Q+ N +F+ +    +         FL ++ +   + E + +A  + ++     W+
Sbjct: 229 LNADIQYVNSAFLRVTGYSMDEVIGHNPRFLKSDLTPPAVFEAMWAALTVGDK-----WE 283

Query: 376 ENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT---IWMFENLTVQVDLETKYNTL 432
             + +  K+ E +   W + + Q +     SN  G     + +  ++T Q     K   L
Sbjct: 284 GELVNRRKTGELY---WEMASIQPI-----SNIEGNVTNYLAIKSDITEQKSAAAKLAEL 335

Query: 433 VKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN 492
           V+    + + L +   V   D R                     G   R ++A+  +   
Sbjct: 336 VEELRRSNEELEQFAYVASHDLR-----------QPLRMISAYLGLLERKLSASFDQ--- 381

Query: 493 ESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE 552
             D  D F   +       + +   LE      +   + P+P  + +   +   +   AE
Sbjct: 382 --DARDFFGFAVDGARRLDRMIVDLLEYSRIGRITTPMAPVPLGEAVSNALRYLEVAIAE 439


>gi|323170365|gb|EFZ56018.1| sensor protein evgS domain protein [Escherichia coli LT-68]
          Length = 790

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 111 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 170

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 171 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSDSPFKDVFSNAH 229

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 230 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 289

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 290 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 347

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 348 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 407

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 408 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 467

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 468 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 527

Query: 789 PSK 791
           P +
Sbjct: 528 PVE 530


>gi|294644343|ref|ZP_06722109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810705|ref|ZP_06769353.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292640313|gb|EFF58565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442038|gb|EFG10857.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 744

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 135/270 (50%), Gaps = 10/270 (3%)

Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Y+   LP  +  T    +N+ D    E  L      L +  E+K SF+ ++S+E+R+P
Sbjct: 478 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEELEAAR-LLAEKAELKQSFLANMSHEIRTP 536

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +I+GF ++L     G  + ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++ 
Sbjct: 537 LNSIVGFANILALED-GLSSVEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 595

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + +L++++  +    +  + +      D        DR+RL+Q+ +  L+NA  F+ 
Sbjct: 596 RCKVRELIDDIYMTHQVLIAPH-LEFLKEVDDTPLEINVDRERLIQVLTNFLNNACKFTE 654

Query: 704 KGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
            G  + L  +   D G+    V+++G  IP +  + +F+RF       Q  G GLGLSI 
Sbjct: 655 TG-YIKLGYSYLPDEGNVQIYVEDSGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSIC 711

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  I   GG + + S     +     +P +
Sbjct: 712 QVIIEKLGGKIELKSEVGKGSRFTVILPCR 741


>gi|265751821|ref|ZP_06087614.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_33FAA]
 gi|263236613|gb|EEZ22083.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_33FAA]
          Length = 748

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 168/389 (43%), Gaps = 24/389 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWK 468
           G  ++    T++   + +    ++++ E +    EG     +  DG+  + + AF  L  
Sbjct: 372 GISYLIYIYTLEKGRKKEALRNLRLKHEALTLALEGGKTYAWCFDGKTAVFDQAFCELTN 431

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VL 526
             +N L     I+ IA     Y +  D       +       R++ Q   +         
Sbjct: 432 RSQNLL----EIKEIAN----YVHPGDQAQFRKNVSNILHRPRRTAQYRCKFDDTGYQWW 483

Query: 527 EYSIIPLPNAQTMLTFV----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           E+    L + +          N+ +    E  L    + L +  E+K SF+ ++S+E+R+
Sbjct: 484 EFRYSVLQHYEQNPIITGLLVNIQEIKDKEEELIRARK-LAEQAELKQSFLANMSHEIRT 542

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF++LL T K  S   ++ ++   I  ++ +LL LVND+L+L+ +++G M  + 
Sbjct: 543 PLNAIVGFSNLLTTEKNIS-EEEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHC 601

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                +     V Q+    +    +        +  +   DR RL Q+ +  L NA  F+
Sbjct: 602 EDCSAHHFAETVYQTHQVIILP-PVEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFT 660

Query: 703 SKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           S+G  + L     ++  +  F V++ G+ IP++  + +F RF       Q  GVGLGL+I
Sbjct: 661 SQGH-IKLGYFCDKEKKEIHFFVEDTGAGIPKEELQMIFERFYKRNEFVQ--GVGLGLAI 717

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIP 789
            +  +    GH+ + S     +     +P
Sbjct: 718 SKVIVEKMNGHIDVQSEVNKGSRFTAVLP 746


>gi|229189481|ref|ZP_04316498.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876]
 gi|228594072|gb|EEK51874.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876]
          Length = 466

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 134/291 (46%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 170 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 229

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +         ++Q +  + I   +  
Sbjct: 230 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--AQQEKVTQLIHKEAGR 287

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 288 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 346

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 347 VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 406

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV+  +++HGG   I S  +  TT+  ++
Sbjct: 407 ERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|323340182|ref|ZP_08080446.1| two component system histidine kinase [Lactobacillus ruminis ATCC
           25644]
 gi|323092373|gb|EFZ34981.1| two component system histidine kinase [Lactobacillus ruminis ATCC
           25644]
          Length = 462

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 147/363 (40%), Gaps = 23/363 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
             +    +     ++ ++ GV VF  +  I L N     +            +       
Sbjct: 111 KMFGQQTRDYLSLMESMTSGVVVFDRNKEITLYNHLLEEILVLPPKPRGRPFY------- 163

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
               ++++    +      + +D+    +   E       +   I +P ++   + + + 
Sbjct: 164 --AVFHDAKLVSMAQKAYETKEDQHMIWEDQTE-GGIKYYDVHAIYVPLSRHHYSVMCLF 220

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + + +ER          +  +++  FV +V +EL++P+T I GF++ L    L       
Sbjct: 221 NDITSER----------RVAQMQRDFVANVGHELKTPVTAIRGFSETLLEGALDD-KETA 269

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S++V+ I   S  L +L+NDIL L+ +DA      +  I L   +  + Q     + E  
Sbjct: 270 SEFVKIILEQSKQLTDLINDILSLSKIDASKGD-TFVKIKLRKFIERIVQQFEPAIGEKK 328

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I         +   V D ++L  I S ++ NA+ ++ KG ++ + A     ++ F +K+ 
Sbjct: 329 ISFIDKIAPDV-EIVCDEKKLQHIISNLMQNAVRYNKKGGSIEVSAVIFENEWCFLIKDT 387

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I  +    +F RF        +   GLGLSIV+ +++   G + ++S     T    
Sbjct: 388 GQGIKHEDLGRIFERFYRGDKSRSQEETGLGLSIVKEYVDSLSGMIDVTSVPNAWTEFMV 447

Query: 787 RIP 789
            +P
Sbjct: 448 TLP 450



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 45/128 (35%), Gaps = 8/128 (6%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            Q      ++ ++T  + +FD+N+ +  +N    E+  +        P           A
Sbjct: 115 QQTRDYLSLMESMTSGVVVFDRNKEITLYNHLLEEILVLPP-----KPRGRPFYAVFHDA 169

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             +         KE+   +++        ++  +   ++V ++ +     + +F ++T +
Sbjct: 170 KLVSMAQKAYETKEDQHMIWEDQTEGGIKYY--DVHAIYVPLSRH-HYSVMCLFNDITSE 226

Query: 423 VDLETKYN 430
             +     
Sbjct: 227 RRVAQMQR 234


>gi|150392094|ref|YP_001322143.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951956|gb|ABR50484.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 627

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 118/247 (47%), Gaps = 5/247 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT---SKLGSLNSKQ 606
           +    L ++ + + + +E+K+ F+  VS+EL++PL  I+G   L++    + + S N   
Sbjct: 342 QMTEELNQRIKEIEEYNELKDQFLSTVSHELKTPLNIILGSNQLMEQLDHNNMESWNVNI 401

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            +Y++    +   LL L+N+++D+   +   ++ +     +   + ++  SI       N
Sbjct: 402 KKYLKMQKQNCYRLLRLINNLIDVTKAENHHLRAHPINRDITKTVEDITMSIVGYADLKN 461

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +   ++ +      D   + +I   ILSNA+ F+ +G  + +           S+K+N
Sbjct: 462 INVVFDTEVEEKIMSFDEDLIERIMLNILSNAIKFTGEGGEIQVTIYDRKEIIAISIKDN 521

Query: 727 GSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  IPED  + +F+RF         +  G G+GL++V+  + LH G +S+ S     +  
Sbjct: 522 GIGIPEDKTEIIFDRFAQVDSTLSREFEGSGIGLALVKYLVELHDGKISVVSKFGEGSEF 581

Query: 785 NCRIPSK 791
              +P K
Sbjct: 582 IIELPVK 588


>gi|198243220|ref|YP_002215737.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|207857102|ref|YP_002243753.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197937736|gb|ACH75069.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|206708905|emb|CAR33235.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 920

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|170748504|ref|YP_001754764.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655026|gb|ACB24081.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 909

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/313 (25%), Positives = 138/313 (44%), Gaps = 12/313 (3%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
           R +AA            D         DDE  +L  T   L  +V E       +     
Sbjct: 191 RPLAALARTMEAARLRHDYAQRAPVGGDDEVGALARTFNDLLSAVNER-----DHRLAAH 245

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           +     +       L+E  +    A+  K++F+  +S+E+R+P+  ++   +LL  S   
Sbjct: 246 SAHLEAEVSARTADLSEAKQVADAANAAKSAFLATMSHEIRTPMNGVLVMAELLAGS--- 302

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L ++Q +Y E I+ S   LL ++NDILD A V+AG ++L    +   +L +      A 
Sbjct: 303 DLPARQRRYAEVIARSGRSLLAIINDILDFAKVEAGKLELERVPVSPAELADTAVTLFAE 362

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD 718
           +     + +      ++    + D  RL Q+ S  +SNA+ F+  G   V +     +G 
Sbjct: 363 RARTAGLDLAAEVAPEVPHAILGDPVRLGQVLSNFVSNALKFTEAGHVSVRMAIDAGDGC 422

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
            + +V + G  IP+D   ++F+ F        RR  G GLGLSI +  +   GG V+++S
Sbjct: 423 LVIAVSDTGIGIPQDKLATIFSAFSQADQSTTRRFGGTGLGLSIAQQIVAAMGGTVAVTS 482

Query: 777 SDEGVTTINCRIP 789
                +T + RIP
Sbjct: 483 RVGAGSTFSARIP 495


>gi|323138790|ref|ZP_08073854.1| histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322395938|gb|EFX98475.1| histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 574

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  VS+E+R+PL  ++G   LL  ++   L+++Q+ YVE I+ SS  L  L++DI
Sbjct: 65  AKSRFLATVSHEIRTPLNGVMGLAQLLAMTR---LDAEQASYVEAINDSSRSLAQLIDDI 121

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQR 686
           LD + ++AG ++L   T  L  L+  V + +A +     + I   I+         D  R
Sbjct: 122 LDFSKIEAGKLELRRETFALAPLVEGVVELLAPRALAKGLEIASHIAPEAPQEMEGDPAR 181

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   ++ NA++F+  G  V +K  RD     F V++ GS +PE    ++F  F    
Sbjct: 182 LRQVLVNLIGNAVNFTDHGG-VGVKVGRDGEMLRFEVQDTGSGVPEAARAAIFEEFEQGD 240

Query: 747 HR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                +  G GLGL+I    +   GG ++++ +    +T    +P+
Sbjct: 241 ASETRRHGGTGLGLAISRRLVAQMGGVLTLAVTSPEGSTFAFTLPA 286


>gi|317969046|ref|ZP_07970436.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CB0205]
          Length = 670

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 155/412 (37%), Gaps = 56/412 (13%)

Query: 416 FENLTVQVDL--ETKYNTLVKVQ---GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           F ++  Q++   E     L   Q      I  +++G  +   +GR+ L NP  R L++ E
Sbjct: 258 FNDMASQLEAYNEANIEELTAAQVKQQSLIATMADGALLLDSEGRVVLVNPTARRLFRWE 317

Query: 471 ENRLSPGTHIRNIAATCSRYYNES-----DGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
              L     +  +    +           +     + +  SF +  ++L+  L+ + D+ 
Sbjct: 318 GRNLEGTRLMDELPEGLNLELQTPLESLLENDKESSDVRCSFGEPPRTLRIVLQSVRDA- 376

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
                    + +T+         +  E  L          +  ++ F+ +VS+ELR+PL 
Sbjct: 377 ---------SGETLKGIAVTVQDLTREVEL----------NAAQSRFISNVSHELRTPLF 417

Query: 586 NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
           NI  + + L           +  ++   +A +  L  LVND+LDL+ +++     +   +
Sbjct: 418 NIKSYVETLHDMGEQLSEEDRRDFLAIANAETDRLTRLVNDVLDLSRLESDR-AWSMEAV 476

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
            L   + +  ++      E  + + +    +L     +   LLQ+   ++ N + F++ G
Sbjct: 477 ELGPAMEQTLRNYKLNAKEKGVELDLHVTDELPRVRGNWDLLLQVLDNLVGNGLKFTAAG 536

Query: 706 STVILKAARDNG------------------------DFIFSVKNNGSSIPEDMCKSVFNR 741
             + L+A                                  + + GS I  +  + +F+R
Sbjct: 537 GRLSLRAYPWPDICTIDPSTAANPDNPACELTAPLPKLRVEISDTGSGISREDQEKIFDR 596

Query: 742 FVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           F    +      G GLGLSIV   +  HG  V + S     TT    +P ++
Sbjct: 597 FYRVENAVHTEVGTGLGLSIVRGILEKHGATVRMVSELNVGTTFWFDLPLED 648



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 17/185 (9%)

Query: 255 SSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHN 314
            S    +F   ++    G     +++   N       A + +    +         ++  
Sbjct: 232 RSIAGGDFEARIALPVGGE--LGELLDGFNDMASQLEAYNEANIEELTAAQVKQQSLIAT 289

Query: 315 LTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTW 374
           +     + D    +   N +   L+  +   L      DEL E L    + P +   +  
Sbjct: 290 MADGALLLDSEGRVVLVNPTARRLFRWEGRNLEGTRLMDELPEGLNLELQTPLESLLEND 349

Query: 375 KENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG------GTIWMFENLTVQVDLETK 428
           KE+        E           +TL +++ S          G     ++LT +V+L   
Sbjct: 350 KESSDVRCSFGEPP---------RTLRIVLQSVRDASGETLKGIAVTVQDLTREVELNAA 400

Query: 429 YNTLV 433
            +  +
Sbjct: 401 QSRFI 405


>gi|224370342|ref|YP_002604506.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223693059|gb|ACN16342.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 873

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 122/238 (51%), Gaps = 3/238 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L E   AL ++  +K  F+ ++++ELR+PLT I G+ DL+   K+GS + K  + ++ I
Sbjct: 236 QLKESITALEESARVKKDFIANITHELRTPLTLIRGWADLVLDGKMGSDSEKLMETMDKI 295

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              + IL   +N++L ++ +DAG++KL  +   +   + +   S    + ++ I +    
Sbjct: 296 GLQTLILTKKINELLKISRLDAGMVKLVLTKTDIGACIFQAVLSFKGLVEQSGIHLTYTG 355

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +G    D+++L  I + ++ NA  F+ KG  +++   + +   + +VK+ G  +   
Sbjct: 356 DASVGEVFIDQEKLKDILNNLIRNAYKFTEKGE-ILVSLLKKSDRLVITVKDTGIGMSSA 414

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           + KS+F RF        R   G GLGL+IV+  + +  G +S+ S     T     +P
Sbjct: 415 VLKSIFRRFHQGDSSTTRKYEGTGLGLAIVKDSVEMMNGTISVESMVGQGTVFTVDLP 472


>gi|20806987|ref|NP_622158.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515469|gb|AAM23762.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 468

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 137/298 (45%), Gaps = 18/298 (6%)

Query: 499 LFAAIITSF-DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             + ++ SF  +  K L     +LS   L+Y +             +  +  +   A  +
Sbjct: 181 FLSLLVASFITNPLKRLTEAANILSQGKLDYKV----------DVKSKDEIGKLANAFNK 230

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            + +L K DE +  FV   S+EL++PL ++    + L  S+   + +   + +  ++   
Sbjct: 231 MSYSLMKIDEERKRFVSDASHELKTPLASVKALIESLINSRSQDI-AFYKEILHDVNGEI 289

Query: 618 TILLNLVNDILDLATVDAGIMK-LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
             +  LVND+L+LA +D   +K      + +++++++V  S+A      N+ +      K
Sbjct: 290 DRMTRLVNDLLELARLD--KIKSPRIKRVEVSEVISDVIDSLAPLAESKNVNLTFNGKEK 347

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           + + V D  R  ++   I+ N + ++ +G  V++    D  +   ++ +NG  I E++  
Sbjct: 348 VFAEV-DPDRFYRMAYNIVENGIKYTHEGGNVLVGLDEDEDNIYLAISDNGIGISEEVLP 406

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +F+RF         +  G GLGL+I +  I++H G V++ S     TT    +P ++
Sbjct: 407 KIFDRFARGDTARSKKNGGFGLGLAIAKEIIDMHEGKVTVESKVGEGTTFKIVLPKRK 464


>gi|121603982|ref|YP_981311.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120592951|gb|ABM36390.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1158

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 155/313 (49%), Gaps = 12/313 (3%)

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
            ++ A        ++  +  + ++  +    ++ Q  LE  ++ + E +         + 
Sbjct: 408 EDLQAQQEELLIANEELEEKSRVLKEYQVSLENQQAELEQTNEQLSEVA---------LS 458

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
                    +A+  L E+ E L +A   K+ F+ ++S+ELR+PL + +  + LL  ++ G
Sbjct: 459 LDHKNVALSQAQIQLEERAEELSRASRYKSEFLANMSHELRTPLNSSLILSKLLSDNQKG 518

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +L+++Q ++ + I ++   LLNL+NDILD++ V+AG ++L+  TI+L DL   +  +   
Sbjct: 519 NLDAEQVKFAQSIYSAGNDLLNLINDILDISKVEAGKLQLSPETILLGDLAASLNSTFGP 578

Query: 661 KMHENNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
              + N+  +V+ +     + V+DRQR  QI   +LSNA+ F+  G   +  + +  G  
Sbjct: 579 LAGQKNLAFEVVVEPGTPATLVSDRQRAEQILKNLLSNAIKFTEAGRVSLSVSPQPGGMI 638

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            F+V+++G  I ++  + +F  F         +  G GLGLSI      L GG +++ S 
Sbjct: 639 GFAVQDSGIGIRQEQQQIIFEAFRQADGTTSRRYGGTGLGLSISRDLTALLGGSITVQSQ 698

Query: 778 DEGVTTINCRIPS 790
               +     +P+
Sbjct: 699 VGRGSVFTLLLPA 711


>gi|301056179|ref|YP_003794390.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300378348|gb|ADK07252.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 484

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 124/271 (45%), Gaps = 7/271 (2%)

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
           + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++L
Sbjct: 210 IKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHDL 266

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           ++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +  
Sbjct: 267 KTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPF 325

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
            + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N++ 
Sbjct: 326 QFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVK 385

Query: 701 FSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLG 757
           +  K    + +  + DN   I  V +NGS I  D    +F RF            G GLG
Sbjct: 386 YMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLG 445

Query: 758 LSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           L+I +  I  H G++   S     T+I   +
Sbjct: 446 LAIAKQIIEEHDGNIWAESELGKGTSIFFSL 476


>gi|168240904|ref|ZP_02665836.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194447656|ref|YP_002045397.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|200389522|ref|ZP_03216133.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|194405960|gb|ACF66179.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|199601967|gb|EDZ00513.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205339630|gb|EDZ26394.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 920

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|46581465|ref|YP_012273.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450887|gb|AAS97533.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311235117|gb|ADP87971.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1080

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 10/249 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +            E   +  +    F+  +++E+R+P+T IIG  D+   S  G L  +
Sbjct: 243 MEVSERTAEFVGARERAERESKAMADFLAAITHEVRTPMTGIIGLLDI---SLRGQLEPR 299

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +++E + +SS  LL+++N +LD + ++AG +++      L + + +V       + E 
Sbjct: 300 LREHLEIVRSSSHALLDVINGVLDFSRIEAGKLRIERIPFALRESVEDVLDLFRAHLAER 359

Query: 666 NIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FI 720
           ++ + +     L      D  RL Q+   I+ NA  F+ +G  V+  +    GD      
Sbjct: 360 DVALVLDMASDLPCKVAGDPTRLRQVLVNIVGNAFKFTEQGEIVVRISHERQGDGSVLLR 419

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F+V++ G  IP +  K +F  F         +  G GLGL+I    + L GG + + S+ 
Sbjct: 420 FAVRDTGVGIPAEARKRLFEMFSQADASVARRFGGSGLGLAIARELVRLMGGSIEVDSTP 479

Query: 779 EGVTTINCR 787
              T     
Sbjct: 480 GRGTVFRFT 488


>gi|83310225|ref|YP_420489.1| nodulation protein V [Magnetospirillum magneticum AMB-1]
 gi|82945066|dbj|BAE49930.1| Nodulation protein V [Magnetospirillum magneticum AMB-1]
          Length = 823

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 124/835 (14%), Positives = 278/835 (33%), Gaps = 104/835 (12%)

Query: 23  KIAVFGTIAGMLLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCL 82
            + ++G    +++      +  +R R +   +       ++++                +
Sbjct: 20  PLVLWGLAMAVVVA--WTAVTSVRDRGAALAEAEFRTQSMADL------------AAEQV 65

Query: 83  TIVWDGKD-----ETPEI--IGQLHQRIDIPQTDTDLLSFENWLKFHHYIKLSKATEKLR 135
               +G D        +   +G      +  ++   +  +   L     + ++ +   +R
Sbjct: 66  LRTIEGADTALKAARTQFRHMGDWDSLGNDRKSWQIIHDYGEALSAVPTVYMADSDGMIR 125

Query: 136 KEGQSFDLVAETQNDCA------------IKIE----GRVSGSCAFLRILSLDGIYSELA 179
             GQSF     +  +              ++I     G V+G+   +    L       A
Sbjct: 126 LHGQSFPFRKVSIAERDYFRLHRDKAADDVQISSPLVGLVTGNPVIIVSRRLTAPDGGFA 185

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDIL----WANISYKKNTETEGIVFQK 235
                  +     + F+ L      +V  +   G +L    + N +     +        
Sbjct: 186 GVVGATIRADAFQAFFQTLGLGEGAIVNLQRADGTMLARQPFRNDAVGAKVDNARFFPAI 245

Query: 236 AIGES---------RKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK-------SYKI 279
           A G+                    R I    L       V T+  G  +          I
Sbjct: 246 AEGKPHGAAVTVSPLDGITRVTAFRRIDRYGLVVISAIPVDTILDGWRRQTVRMAAMVGI 305

Query: 280 VRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR-----S 334
             VL S     +      E+    +L  +   L     ++A     +     NR      
Sbjct: 306 GIVLLSTLFIMLLRRYHNEVEARAELKTSEATLSR-AQSVAHIGSWQVDIASNRVRFSEE 364

Query: 335 FVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              ++ I         S   ++E +   ++ P Q        +  +   S  ++     +
Sbjct: 365 TYRIFGITP---GAPISFASVMEMIHPDDRQPVQ--------DALAALMSGGSYDVEHRI 413

Query: 395 --PNGQTLHVIVTSNPRGGT-------IWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
               G+   V   +    GT       +   +++T +   E        +  E     + 
Sbjct: 414 VAAGGELKCVAAKALITNGTDGRPQEILGTIQDITEKKQAEIAIREHQSLLLEVQSVANL 473

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT---------CSRYYNESDG 496
           G   +        S+P   +++    + L  G     + A           +        
Sbjct: 474 GYYDYDIRADRWRSSPILDAIFGIGPDFLRSGLGWLQLVAPSMKAEMTTYLAEIQAGEHD 533

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
           +D   AII   D   + + G  ++  D        P+   + + T  ++T+  RAE+AL 
Sbjct: 534 FDKAYAIIRPGDGAERWVAGLGKIERDG----EGRPI---RMVGTIKDITNQRRAEQALR 586

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
           +K E L +++     F    S++LR PL  +  + DLL       L+    +++ +    
Sbjct: 587 DKAEELERSNTELEQFAYVASHDLREPLRMVSSYVDLLARRYGDKLDDDAREFIAFAKDG 646

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +T +  L+ ++L+ + +  G +      + L  ++    +++A K+ E+   I       
Sbjct: 647 ATRMDRLILELLEYSRI--GRITRPMLPVALGPVVERALRALAPKIEESGAEIAT-PPSV 703

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDM 734
           L + + D + L+++F  ++ NA+ +        + L+A     +++ +V +NG  I    
Sbjct: 704 LPTVLGDAEELMRLFQNLIGNAIKYRDPERKPVITLEAENTGKEWVLTVVDNGIGIDPKY 763

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            + VF  F     RG+  G G+GL++ +  +  HGG + + S     +  +  +P
Sbjct: 764 YERVFLIFQRLHRRGEFEGTGIGLAVCKKIVEHHGGRIWVESVPGQGSRFSVTLP 818


>gi|330828549|ref|YP_004391501.1| Proline sensor PrlS [Aeromonas veronii B565]
 gi|328803685|gb|AEB48884.1| Proline sensor PrlS [Aeromonas veronii B565]
          Length = 1151

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/418 (20%), Positives = 168/418 (40%), Gaps = 37/418 (8%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++ S  +G  + + E  T+  +    +     +    I+H+ +G++V   + R+   N
Sbjct: 597  RLVLASALQGRNMQLEEIATIVDEASDVFRFNRGLLQGAIEHIGQGISVVDRELRLVAWN 656

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTL 518
              +  L+      +  G  I  I    ++       D  D  A  + +F     +     
Sbjct: 657  RRYIELFHYPPGLIQAGRPIEEIIRYNAQQGLCGPGDIEDHVARRV-AFMKRGSAHISAR 715

Query: 519  ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR--------------- 563
            E     V+E    P+P    ++TF ++T    AER L E NE L                
Sbjct: 716  ERPDGRVIEMQGNPMPAGGFVMTFTDITPFRDAERVLREANEHLEARVAERTRELSELNR 775

Query: 564  ----------KADEIKNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGSLNSKQSQYVEY 612
                      +A++ K+ F+  VS++L  PL     F + LL+        ++ +++++ 
Sbjct: 776  QLLLVNQQVERANQSKSRFLAAVSHDLTQPLNAAKLFTSSLLEMLPDAGEQARIARHIDD 835

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               ++    +L+ D+LD++ ++AG  K       L DLL+ +K           I   V+
Sbjct: 836  ALGATE---DLITDLLDISRLEAGKFKAKKLDFALRDLLDNLKAEFGVLAQAGGIHFSVV 892

Query: 673  SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
                  +  +D + L ++    L+NA  ++  G  V+L   R        V +NG  IP+
Sbjct: 893  --ESKHAVHSDVRLLRRVLQNFLTNAFRYNP-GGRVLLGCRRMGEKIRIEVWDNGPGIPQ 949

Query: 733  DMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            D  +++F+ F    H    +  G+GLGL+I      + G  +++ S     +     +
Sbjct: 950  DKQEAIFDEFSRLDHSRTAKEQGLGLGLAIARGISLVLGHQLTLQSWPGKGSVFAVTL 1007



 Score = 77.7 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 312 LHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW 371
           + ++   I++ D+   L   NR ++EL+      +      +E++ +           + 
Sbjct: 636 IEHIGQGISVVDRELRLVAWNRRYIELFHYPPGLIQAGRPIEEIIRYNAQQGLCG-PGDI 694

Query: 372 KTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNT 431
           +       +  K    H      P+G+ + +     P GG +  F ++T   D E     
Sbjct: 695 EDHVARRVAFMKRGSAHISARERPDGRVIEMQGNPMPAGGFVMTFTDITPFRDAERVLRE 754

Query: 432 LVK 434
             +
Sbjct: 755 ANE 757


>gi|313117234|ref|YP_004044217.1| PAS domain S-box [Halogeometricum borinquense DSM 11551]
 gi|312294125|gb|ADQ68556.1| PAS domain S-box [Halogeometricum borinquense DSM 11551]
          Length = 730

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 158/361 (43%), Gaps = 24/361 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA----TCSRY 490
                ID+ S+ +     +G I   +P+  ++   +  ++     +  +      T    
Sbjct: 383 RASALIDNASDLITQVDENGDITFQSPSSHAILGYDPEQMDGTPLLSYVHPDDKSTVDSA 442

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
            ++ +        +   D + + L+GT E ++D+     ++        +T  ++TD + 
Sbjct: 443 LSDDENPRRIEFRMQDADGDWRVLEGTCEKVTDNPFVTGVV--------VTCHDITDRIE 494

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +  L E    L +++E    F    S++L+ PL  +  + DLL +     L+ + ++Y+
Sbjct: 495 RQAELEETKRELERSNEALQQFAYIASHDLQEPLRMVSSYLDLLSSEYGDRLDEEANEYI 554

Query: 611 EYISASSTILLNLVNDILDLATV--DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           E+    +  + N+++ +L  + V   AG    ++  I  N+++++V   +   +   +  
Sbjct: 555 EFAVDGAERMRNMIDGLLTYSRVKTRAG----DFEPIDPNEVIDDVCLDLKLLIENEDAT 610

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG-STVILKAARDNGDFIFSVKNNG 727
           I   S     +  AD  +L Q+F  ++ NA++ + +    + +        + FSV++NG
Sbjct: 611 ITTDS---FPTIRADENQLRQVFQNLIKNAIEHAGEDPPEIHIGFTELPDAYRFSVEDNG 667

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             IPE+  + +F  F      G+  G G+GL++ +  +  HGG + + SS    TT    
Sbjct: 668 VGIPENQQEKIFEIFEQA--SGEESGTGIGLAVCKRIVERHGGDIWVESSVGKQTTFYFT 725

Query: 788 I 788
           I
Sbjct: 726 I 726



 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 110/326 (33%), Gaps = 29/326 (8%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            +      ++ N +  I   D+N  + F + S   +   D   +   P    LL ++   
Sbjct: 379 REHLRASALIDNASDLITQVDENGDITFQSPSSHAILGYDPEQMDGTP----LLSYVHPD 434

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
           +K          +      ++  +   D W +  G    V        G +    ++T +
Sbjct: 435 DKSTVDSALSDDENPRRIEFRMQDADGD-WRVLEGTCEKVTDNPF-VTGVVVTCHDITDR 492

Query: 423 VDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWKTEENRLSP--GT 478
           ++ + +     +    + + L +   +A       +++ +     L     +RL      
Sbjct: 493 IERQAELEETKRELERSNEALQQFAYIASHDLQEPLRMVSSYLDLLSSEYGDRLDEEANE 552

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
           +I        R  N  DG   ++ + T   D  + +    E++ D  L+  ++ + N   
Sbjct: 553 YIEFAVDGAERMRNMIDGLLTYSRVKTRAGD-FEPIDPN-EVIDDVCLDLKLL-IENEDA 609

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL----- 593
            +T  +       E  L +  + L K           + +    P    IGFT+L     
Sbjct: 610 TITTDSFPTIRADENQLRQVFQNLIKN---------AIEHAGEDPPEIHIGFTELPDAYR 660

Query: 594 --LKTSKLGSLNSKQSQYVEYISASS 617
             ++ + +G   ++Q +  E    +S
Sbjct: 661 FSVEDNGVGIPENQQEKIFEIFEQAS 686


>gi|296502578|ref|YP_003664278.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296323630|gb|ADH06558.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 357

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 118 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 175

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 176 IETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 234

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+ ++           ++++G  I E
Sbjct: 235 -DLEKVYVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISE 293

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    R+P+
Sbjct: 294 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMPN 353

Query: 791 KE 792
            E
Sbjct: 354 HE 355


>gi|311696322|gb|ADP99195.1| multi-sensor signal transduction histidine kinase [marine bacterium
           HP15]
          Length = 607

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 6/337 (1%)

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            +R       +       I+ I               +         +  KS++ + + L
Sbjct: 267 QYRLWPDGHSSFPYTSPGIKEIYGIDVEEAAIDANKAIARVHPDDLPELLKSIEESAQTL 326

Query: 522 SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN----EALRKADEIKNSFVQHVS 577
           S   L Y +       + +  +   +++  E  L        +  ++ DE+KN F+  VS
Sbjct: 327 SQWQLRYRVRLDTGGWSWVEGLAQPEALPDESILWHGYITNVDERQRIDEMKNQFISTVS 386

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+PLT+I G   L+     G +N K +Q +     +S  L +L++D+LD+  + +G 
Sbjct: 387 HELRTPLTSISGSLGLILGGATGPVNEKTAQMLTIAQRNSKQLRHLIDDLLDIEKLVSGN 446

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           +  + S   L++      + I     +  + +++    +      D  RL Q  + +LSN
Sbjct: 447 VTFDASVQRLDEAAEAAIEEIQPMARKRGVEVQLNVLERDLYANYDIVRLTQAITNLLSN 506

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVG 755
           A+ FS  G+ V +  ++   +    V++ G  +PE     +F +F          + G G
Sbjct: 507 AIKFSPAGAAVRVDLSKSGDEAKLEVRDQGPGVPESFRDRIFQKFAQANSTSSRTKEGTG 566

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL+I    +   GG V   S +         +P  E
Sbjct: 567 LGLAITRELMQAMGGEVDFESEEGSGACFWITLPLAE 603


>gi|299534473|ref|ZP_07047806.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298730101|gb|EFI70643.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 438

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 5/237 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A+   +  L    + +  F+  +++ELR+PLT I G+TD+L    L   +  + +Y+  I
Sbjct: 193 AIQLLSNDLNHLRQERKEFLSSIAHELRTPLTFIKGYTDILAKRDLTEQD--RQKYLAII 250

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
              +  L  L+ D+ DLA +D     +    + L      +++ ++    +  I + V  
Sbjct: 251 IEETNRLSRLIKDLFDLAKMDENSFVIEKHYLHLEPFFTSIEEKLSPAFQDKGIYLVVRC 310

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  L +  AD  RL QI   +L+NA+ + + G    +   +D+G    +V++ G  IP+ 
Sbjct: 311 DSGL-TLYADEARLEQILINLLNNALIYCAPGDMTTVTVKKDSGTLSITVEDTGKGIPKK 369

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               +F+RF        R   G GLGL+IV+  +  HGG + + S     TT     
Sbjct: 370 DLPYIFDRFYRVEKSRSRALGGSGLGLAIVKELVQAHGGEIKVRSEINKGTTFELSF 426


>gi|298293988|ref|YP_003695927.1| histidine kinase [Starkeya novella DSM 506]
 gi|296930499|gb|ADH91308.1| histidine kinase [Starkeya novella DSM 506]
          Length = 432

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 144/360 (40%), Gaps = 21/360 (5%)

Query: 431 TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
              +     +  L +   +    G +  +N             LS    + ++       
Sbjct: 81  RTEERLPALVRALPDPALLLDARGTVLAAN-------------LSAVGLLASVRVGDPVS 127

Query: 491 YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
           +       L A   ++ D   + ++    +  D  L   I+P+                 
Sbjct: 128 FAMRVPEVLEAIRASAADGVARRIEFAERVPIDRWLRADIVPIRPG-----PARDGAPTE 182

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A           R+ ++++  F+ + S+ELR+PL ++ GF + L+       N+++  ++
Sbjct: 183 AVLLGFVDLTPQRRVEQMRVDFIANASHELRTPLASLSGFIETLQGPARNDANARER-FL 241

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           + +   +  +  L++D+L L+ ++        + I L  +++ V+ ++     E  + I 
Sbjct: 242 KIMGEQARRMSRLIDDLLSLSRIELNAHLRPEAEIDLVSVISHVRDALGPLGRERGVEIA 301

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
                   +   DR  L+++F  ++ NA+ +   G  V +  AR+ GD + SV++ G  I
Sbjct: 302 FEHPQPPVNVRGDRDELIRVFENLVENALKYGGAGGRVEIAIAREGGDAVVSVRDYGPGI 361

Query: 731 PEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             +    +  RF      H  ++ G GLGL+IV+  +  H G + I S     +T + R+
Sbjct: 362 APEHVPRLTERFYRVDTAHSREQGGTGLGLAIVKHIVARHRGKLGIESVPGEGSTFSVRL 421


>gi|254448754|ref|ZP_05062211.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
 gi|198261595|gb|EDY85883.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
          Length = 882

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +   ALT        A++ K+ F+ ++S+E+R+PL  IIGF D+L  +K   ++S+Q
Sbjct: 273 ELKQKNEALTIAQAEAVSANKAKSVFLANMSHEIRTPLNGIIGFLDMLNRTK---VDSQQ 329

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +QY+     ++  L+ L+N ILD + +++G M L    I ++DLL E+    A    E  
Sbjct: 330 NQYISTAQVAAKSLIQLINGILDFSRIESGKMPLKQDEIPIDDLLAEIYDLHAPSAFEKG 389

Query: 667 IRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVK 724
           + +       L  + + D     QI   +LSNA+ F+  G   + +    +N     SV 
Sbjct: 390 VELLFFPAQSLPSTLMLDANVFKQIIGNLLSNAIKFTQHGDIQLHMNYFAENRAIAISVL 449

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I +++   +FN F    +   R   G GLGL+I  S + LHGG +S  +  EG  
Sbjct: 450 DSGVGISQEVINDIFNEFEQGDNTTARVHGGSGLGLAITRSLVELHGGSISAHTRPEGGA 509

Query: 783 TINCRI 788
             +  I
Sbjct: 510 RFDLTI 515


>gi|220908400|ref|YP_002483711.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865011|gb|ACL45350.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 500

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 166/379 (43%), Gaps = 19/379 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  +  +            +   + +++  PDG +   N   R +   ++  +      
Sbjct: 127 ERTQILRRLQESENCFRGVFNQTFQFMSLLSPDGVVLDINQVTREVSGFQDEAVINTF-- 184

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-LLSDSV---LEYSIIPLPNA 536
             I        +E     L  A++ +   E  ++Q  L+   SD +   L++SI PL N+
Sbjct: 185 --IWEAPYWQSSEQSKRWLETAVLRAAQGE--TIQSELQSCTSDQIPLWLDFSIKPLKNS 240

Query: 537 QT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           +      +    +++   RAE  +    E  ++  ++KN F+  +S+E RSP+  I    
Sbjct: 241 KGDINLLIAEGRDISKLKRAEAEIRRSLEKEQELSQMKNKFISMISHEFRSPMAIISSAI 300

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           DLL+ ++L     ++ ++ + + +S    L L++++L L     G ++L +S + L    
Sbjct: 301 DLLEDNELS--EDEKIKFYQKMRSSIDQTLQLIDEVLLLGRA-TGRVELEHSPLDLEKYC 357

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +E+ +++         +I  + +G  G    D   L QI   +LSNA+ +S K   +   
Sbjct: 358 SEIVETLQ-LTTGREHQIIYVCEGTSGQVGMDSFLLKQIIDNLLSNAIKYSPKSGMIRFT 416

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
            +  +   IF +++ G  IPE     +F  F    +  + +G GLGL+IV+  ++L  G 
Sbjct: 417 LSLQSNQAIFCIQDWGIGIPEQDQAKLFTAFKRAGNVYKIQGTGLGLAIVKQCVDLLHGK 476

Query: 772 VSISSSDEGVTTINCRIPS 790
           + + S +   TT    +P 
Sbjct: 477 IEVESQEGCGTTFTVTLPL 495


>gi|22536884|ref|NP_687735.1| sensory box histidine kinase [Streptococcus agalactiae 2603V/R]
 gi|22533734|gb|AAM99607.1|AE014224_10 sensory box histidine kinase [Streptococcus agalactiae 2603V/R]
          Length = 449

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 142/374 (37%), Gaps = 35/374 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE + N L       + ++++GV      G+I + N   +  +    +       I ++
Sbjct: 87  NLEQEKNRL----ASILTYMTDGVLATDRSGKIVMINETAQQQFNLAYDEALSMN-IVDM 141

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             + S Y  +         ++   D+  + +   +    +      I  L          
Sbjct: 142 LGSGSPYSFQDLVSKTPEVVLNRRDENGEFVTLRIRFALNRRESGFISGLV--------- 192

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                     A++       K +  +  FV +VS+ELR+PLT++  + + L     G+LN
Sbjct: 193 ----------AVSHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDE---GALN 239

Query: 604 SKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +  +++     +  ++ +++D+L L+ +D  +  L+         +  +        
Sbjct: 240 EEVAPSFIKVSLDETNRMMRMISDLLSLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIR 299

Query: 663 HENNI-----RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           ++  +      I      K      D  ++ Q+   IL+NA+ +S  G  + +       
Sbjct: 300 NQKTVTGKVYEIVRDYPLKSIWVEIDTDKMTQVIDNILNNAVKYSPDGGKITVNLRTTKT 359

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I S+ + G  IP+     +F+RF         ++ G GLGLSI +  +  H G +   
Sbjct: 360 QMILSISDQGLGIPKKDLPLIFDRFYRVDKARSRKQGGTGLGLSIAKEIVKQHKGFIWAK 419

Query: 776 SSDEGVTTINCRIP 789
           S     +T    +P
Sbjct: 420 SEYGKGSTFTIVLP 433


>gi|187933470|ref|YP_001886701.1| sensor histidine kinase/response regulator [Clostridium botulinum B
           str. Eklund 17B]
 gi|187721623|gb|ACD22844.1| sensor histidine kinase/response regulator [Clostridium botulinum B
           str. Eklund 17B]
          Length = 510

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 123/271 (45%), Gaps = 6/271 (2%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++  SI  L N   M+           E+     ++ +   +  KN++  ++S+ELR+PL
Sbjct: 238 IIYLSITKLKNLDRMVEKRTKQLRDEMEKNRRLFDKVID-LERRKNNYFVNLSHELRTPL 296

Query: 585 TNIIGFTDL---LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
             I     L   L     G    K S Y++ I  +S  LL L+N+I+D   +++G  ++N
Sbjct: 297 NVISSTEQLISELNKQYDGIDKEKLSYYMKIIKRNSNRLLKLINNIIDTNKIESGRYEMN 356

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                +  L+ E   S+   +    I + +  + +    + D   + +    ++SNA  F
Sbjct: 357 LKENDIVYLVEETSLSLKDYIENKGIHLIIDPEMEEKIIICDSYEIERCIVNLVSNAAKF 416

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLS 759
           + +G  + +     N + I +VK+ G  I     K+VF+RF    +A+   + G GLGL+
Sbjct: 417 TPEGGEIKVTLKELNNNVIITVKDTGIGIDPKYHKAVFDRFNQIIDANSESKGGSGLGLT 476

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           I +  I+LH G + ++S           +PS
Sbjct: 477 ITKHIIDLHKGKIYVNSDIGKGCEFAIILPS 507


>gi|171060879|ref|YP_001793228.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170778324|gb|ACB36463.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 757

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 201/552 (36%), Gaps = 80/552 (14%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
              ++  Q       L  +   +   D    +   N +   +    L  +   P+ + L 
Sbjct: 226 AAASLQSQRAQAAVTLGAIADGVFTLDGEGRVVLANPAACAMAGRTLEQMFGRPAAEVLP 285

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSN-PRGGTIWM 415
           +    A+ L       T +          +   DT       TL  I++ +    G +  
Sbjct: 286 QVYADASHLG----RWTGRRVTLRCDTQPDVVVDT-------TLSPILSPDGAVAGHVLA 334

Query: 416 FENLTVQVDLETKYNTLVK----------------------------------------- 434
             +++ Q  L+ +    ++                                         
Sbjct: 335 CRDISEQSALDQRLRAELRARESALVALRQVLEGLTPGAQASARTVGSDDLAAISLMISE 394

Query: 435 ------VQGETIDHL----SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
                 ++GE +D +     +G   F    R+   +PAF  L    E++ + G   R+I 
Sbjct: 395 LVTRLQIRGEQLDAIFALSPDGFVSFDSQRRVNYVSPAFTRLTGMPESQ-ALGADERDIE 453

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN 544
           A      +    W  F A+         +     EL+  +     ++ +   +     ++
Sbjct: 454 AQLRAQCDSPIPWRGFDAMRHDLRPRDDASVPGRELIETARPARRVLEVGLREGHTEAIS 513

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
              S+R            R+ D++K+ F+   ++ELR+P+ +I GF +L+   KL +   
Sbjct: 514 QVLSLR-------DVTHEREVDQMKSEFLSTAAHELRTPMASIFGFAELMLRRKLSA--E 564

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDA-GIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           KQ   +  I   S ++++++N++LDLA ++A G       T+ L  LL EV         
Sbjct: 565 KQLDVLTTIHRQSQLMISIINELLDLARIEARGGKDFVLETLDLALLLREVLHDFKPP-Q 623

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI--- 720
           +  + +      +    + DR ++ Q    +LSNA  +S  G  V+++        +   
Sbjct: 624 DRALPL-FERRLEPVPVLVDRNKMRQAIGNVLSNAYKYSPHGGDVVVRIVAGTDPAVPMI 682

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
              V+++G  +       V  RF      G   G GLG+SIV+  I L GG ++++S   
Sbjct: 683 GIEVRDHGIGMTAAQLARVSERFYRADTSGSIAGTGLGMSIVKEIIELLGGRIALASEPA 742

Query: 780 GVTTINCRIPSK 791
             TT+   +P K
Sbjct: 743 QGTTVTLWLPCK 754


>gi|62179983|ref|YP_216400.1| secretion system regulator:sensor component [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62127616|gb|AAX65319.1| Secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714450|gb|EFZ06021.1| secretion system regulator:sensor component [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 920

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|309790681|ref|ZP_07685232.1| integral membrane sensor signal transduction histidine kinase
           [Oscillochloris trichoides DG6]
 gi|308227275|gb|EFO80952.1| integral membrane sensor signal transduction histidine kinase
           [Oscillochloris trichoides DG6]
          Length = 409

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 114/239 (47%), Gaps = 4/239 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L   NE LR+ +  K++ +   S++LRSPL  I     L+  +   +      + V+ I
Sbjct: 171 ELAAANERLRELNAFKDNLLMIASHDLRSPLGIIQNIAGLILDNP--ATPETTRRAVQTI 228

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            +S+  L +LV DILD+++++AG + L    I +  ++ +V +++        I + +  
Sbjct: 229 MSSAEQLNSLVADILDISSLEAGKVVLEPIIIQVGFIVEQVIENLRYSAEAKQIHLSLEV 288

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  +AD  +L Q+FS ++ NA+ F+  G  + +    +       V +NG  IP +
Sbjct: 289 SPTNLVVLADWHKLSQVFSNLIGNAIKFTPPGGWIAVTIKPEGEHICCEVADNGLGIPGE 348

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +F +F      G    RG GLGL+IV+  + LHGG + + S     +     +P+
Sbjct: 349 AIPHIFEKFQRAHPTGTNNERGSGLGLAIVQQLVELHGGKIEVHSQVGQGSRFRVYLPA 407


>gi|312113023|ref|YP_004010619.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218152|gb|ADP69520.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 508

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK- 605
           +  RA+ A  E       A+  K+ F+ ++S+ELR+PL  I+GF++++K   LG ++++ 
Sbjct: 227 ELERAKAASDEARVRAEAANVAKSKFLANMSHELRTPLNAIMGFSEMIKDEVLGPIDNEN 286

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
              Y   I  S + LL L+N+ILDL+ ++AG  +L    I +     E  + +    H+ 
Sbjct: 287 YRSYAADIHESGSHLLKLINEILDLSRIEAGRYELTEKPIDVAATALESLRLMRIDAHQK 346

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVK 724
           N+R+       +   +AD + L QI   +LSNA+ F+     + ++A    +G+ + SV+
Sbjct: 347 NLRVVTDFRPDMPRIMADERALRQICLNLLSNAIKFTPDSGLIAVRAGILPSGEAVLSVR 406

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  IPE+    V   F   +   +    G GLGL IV     LHGG   + S     T
Sbjct: 407 DNGPGIPEEEISQVLRAFGQGSLALKTGESGTGLGLPIVSGLAELHGGRFELRSKLGVGT 466

Query: 783 TINCRIPS 790
             +  +P 
Sbjct: 467 EASLILPK 474


>gi|222086249|ref|YP_002544781.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221723697|gb|ACM26853.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 509

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 4/237 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SKQSQYVEYISASS 617
                +A+  K+ F+  +S+ELR+PL  I+GF++++    +G LN +   +Y   I  S 
Sbjct: 250 RRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLNNATYREYTTDIHRSG 309

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LLNL+N+ILDL+ ++AG  +LN   I L D+  +    +  +    NI I    + +L
Sbjct: 310 QHLLNLINEILDLSRIEAGKYELNEEAISLLDVAEDCIGMVQLRARGKNISISPQFELQL 369

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            S  AD + + Q+   +LSNA+ F+ +G  + +K      G    ++++NG  IPE+   
Sbjct: 370 PSVWADEKSIRQVILNLLSNAVKFTPQGGEITVKVGWTSGGGQYVAIRDNGPGIPEEEIP 429

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V + F   +   +   +G GLGL IV++ +  H G   + S     T +   +P+K
Sbjct: 430 VVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFMLKSKLREGTEVIAILPAK 486


>gi|326791209|ref|YP_004309030.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326541973|gb|ADZ83832.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 475

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 113/240 (47%), Gaps = 4/240 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           A     + L++ ++ +  FV +VS+EL++PL++I   T+ L   +   +     ++ E I
Sbjct: 230 AFNHMTDQLQRVEQSRQEFVSNVSHELKTPLSSIKVLTESLMFQEDVPV-EMYKEFFEDI 288

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           ++    L N+++D+L L  +D   + LN + + +N++   + + +     +  I++   S
Sbjct: 289 NSEVDRLNNIISDLLTLVRLDQREIPLNIANVDINEMTQNILKRLTPLAKKKEIKLIYES 348

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
              + + + D  +     + ++ NA+ ++  G  V +    D  D   SV++ G  I ++
Sbjct: 349 HKDIIAEI-DEVKFTLALTNLIENAIKYTPSGGEVGVVIQSDLQDAFISVQDTGIGIAKE 407

Query: 734 MCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               +F RF        R   G GLGL+I    + +H G + + S +   +  + + P +
Sbjct: 408 EQSRIFERFYRTDKTRNRETGGTGLGLAITYKTVIMHNGSIQVESEEGKGSVFSVQFPLR 467


>gi|261419916|ref|YP_003253598.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319766730|ref|YP_004132231.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261376373|gb|ACX79116.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317111596|gb|ADU94088.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 457

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 5/250 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +  +  RA+      L    + ++ F+  +S+ELR+PLT + G+ D+ +   L  
Sbjct: 209 MKGNDELAQLGRAIQTLANDLAYLKQERSEFLASISHELRTPLTYVKGYADIARRPHLS- 267

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +++ Y+  I   +  +  +V D+ +LA ++    ++      L   L ++ + +   
Sbjct: 268 -EEQRANYMAIIYEEAEKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPA 326

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E ++ +     G + + + DRQR  Q+   +L NA  ++  G+TV +         + 
Sbjct: 327 FQEKSLSLVCQCPGSVMAAI-DRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQKQGIVI 385

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G+ IP +    +F RF        R   G GLGL+I +  +  HGG ++  S   
Sbjct: 386 AVSDEGTGIPPEDVPRIFERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQG 445

Query: 780 GVTTINCRIP 789
             TTI   +P
Sbjct: 446 KGTTILITLP 455


>gi|168463198|ref|ZP_02697129.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195634353|gb|EDX52705.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 920

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|218700838|ref|YP_002408467.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli IAI39]
 gi|218370824|emb|CAR18637.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli IAI39]
          Length = 1197

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   S    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKSAMLPLENSESPFKDVFSNTH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TLPERYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|170077056|ref|YP_001733694.1| Signal transduction histidine kinase [Synechococcus sp. PCC 7002]
 gi|169884725|gb|ACA98438.1| Signal transduction histidine kinase [Synechococcus sp. PCC 7002]
          Length = 553

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 16/250 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L + ++A  +A  +KN F+ + ++ELR+PL  IIGF  L+    +    +++  ++  
Sbjct: 284 QELEQLHQAATEAARLKNDFLANTTHELRTPLNGIIGFLTLVLDE-MADGRAEELDFIAA 342

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S+  LLNL+NDILD+A +++G + L+   I L +LL+ +      ++   N+  +++
Sbjct: 343 AHESALHLLNLINDILDIAKIESGKLDLDLQPISLGELLDNLNNFARPQLQTKNLTWEIL 402

Query: 673 SDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGST----------VILKAARDNGDFI 720
                   +   D QRL Q+   ++ NA+ F++ G            VI    +  G   
Sbjct: 403 VPESHDDIILYGDYQRLFQVLLNLVGNAIKFTNAGGITINVELVFKPVIHDDQQFPGMVK 462

Query: 721 FSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            SV + G  +  DM   +F  F  V   H  +  G GLGL+I +  +   GG +S  S  
Sbjct: 463 ISVIDTGIGVALDMQSKLFQNFSQVRGGHTRKYGGTGLGLAISKKLVEACGGKISFYSMG 522

Query: 779 EG-VTTINCR 787
           EG  +T+   
Sbjct: 523 EGLGSTVTFS 532


>gi|1498305|gb|AAC44299.1| SpiR [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 823

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|291613055|ref|YP_003523212.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583167|gb|ADE10825.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 725

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A + L ++   L  A+  K+SF+  +S+E+R+PLT ++G  +LL  ++   L+ +Q   +
Sbjct: 187 AMQKLEQRETELAAANRAKDSFLATMSHEIRTPLTGMLGMLELLSMTQ---LDMEQRMTL 243

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +    S   LL +V+DILD + ++ G ++L+     +  LL EV  + +       + + 
Sbjct: 244 DTAWDSGRGLLRIVSDILDWSKIEEGKLELSLRPTSIPQLLQEVVNTYSRVASAKTLILC 303

Query: 671 VISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVK 724
              D ++  + + D  RL Q+ +  +SNA+ F+  G  + L A             FSVK
Sbjct: 304 RRVDPRISAAHIVDPLRLSQVLNNFVSNAIKFTQYGE-IELSAELIERLDSGERIRFSVK 362

Query: 725 NNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I +++ K +F R+            G GLGL+I      +  G + + S     +
Sbjct: 363 DTGIGIAKEVQKHLFQRYRQESADTARMYGGTGLGLAICRRLTEMMDGQIGLKSEPGLGS 422

Query: 783 TINCRI 788
             +  +
Sbjct: 423 IFSITL 428


>gi|238650409|ref|YP_002916261.1| sensory transduction protein kinase [Rickettsia peacockii str.
           Rustic]
 gi|238624507|gb|ACR47213.1| sensory transduction protein kinase [Rickettsia peacockii str.
           Rustic]
          Length = 497

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 238 TNYARQIIEEQLEINRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L+      
Sbjct: 298 RDA---EKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLIL 354

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +  +  +  + +      +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 355 VKPRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDEL 414

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 415 AKLVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 474

Query: 774 ISSSDEGVTTINCRI 788
           + S     TTI    
Sbjct: 475 LQSKINEGTTITITF 489


>gi|255530387|ref|YP_003090759.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343371|gb|ACU02697.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 719

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 5/247 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              R+E+ L ++N+      + K   +  +S+E+R+PL  I GF  +   +   +L+ +Q
Sbjct: 319 QLNRSEQHLRKENKRSGILAQQKMDLLNRMSHEIRNPLNAIKGFLYVFSRT---NLSKEQ 375

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +  ++ I  SS +LL  ++D LD + ++    K+N      +  L +V Q++     E N
Sbjct: 376 TTMIDSIKLSSDMLLQTLDDTLDASKMENSEFKINKEPFNPDLTLRKVIQNMEYGAAEKN 435

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + I     G   + V  D  RL QI   +LSNA+ ++ +G  +I+ A   N     +VK+
Sbjct: 436 LNIAYFYSGNSEAIVNGDSFRLKQILVNLLSNAIKYTKEGG-IIVTAEMSNDKLYVAVKD 494

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
            G+ I  +    +F+++        + G GLGL I +  + L  G + + S+    +T +
Sbjct: 495 TGAGISLEQQSGLFSKYYQTNSSKGQTGTGLGLFICKQLVELQNGKIHVESTPGIGSTFS 554

Query: 786 CRIPSKE 792
             IP K+
Sbjct: 555 FYIPYKK 561


>gi|168233586|ref|ZP_02658644.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472520|ref|ZP_03078504.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458884|gb|EDX47723.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332352|gb|EDZ19116.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 920

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTLALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|67459382|ref|YP_247006.1| histidine kinase sensor protein [Rickettsia felis URRWXCal2]
 gi|67004915|gb|AAY61841.1| Histidine kinase sensor protein [Rickettsia felis URRWXCal2]
          Length = 497

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 238 TNYARQIIEEQLETNRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L++     
Sbjct: 298 RDA---EKNKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLIL 354

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +  +  +  + +      +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 355 VKPRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDEL 414

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 415 AKLVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 474

Query: 774 ISSSDEGVTTINCRI 788
           + S     TTI    
Sbjct: 475 LQSKINEGTTITITF 489


>gi|325293768|ref|YP_004279632.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325061621|gb|ADY65312.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 1154

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + + AL +  E    A+  K+ +V  +S+ELR+PL  ++G+  +L+  +  ++ + + 
Sbjct: 679 HKKTDAALQDAKETAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILERDE--TIPAPRQ 736

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L+++      +     +
Sbjct: 737 SAIKVIRRSADHLSGLIDGLLDISKIEAGRLQVYSNEINIQDFLDQIVDMFRPQAQAKGL 796

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +      L  +V  D +RL QI   +LSNA+ F+ +GS V    A  +    F+V + 
Sbjct: 797 EFRHERAHSLPQYVRTDEKRLRQILVNLLSNAIKFTDEGS-VTFDVAYRSQVASFTVSDT 855

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E     ++  F        R   G+GLGL+I     N  GG +S+SS  +  +T 
Sbjct: 856 GRGIAEKDLARIYEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEISVSSEKDNGSTF 915

Query: 785 NCRI 788
             R+
Sbjct: 916 RVRL 919


>gi|121996907|ref|YP_001001694.1| PAS/PAC sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
 gi|121588312|gb|ABM60892.1| PAS/PAC sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
          Length = 446

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 137/352 (38%), Gaps = 30/352 (8%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            + +   V   D R+   N A R L          G  I N+                F 
Sbjct: 105 AMPDATLVLYADDRVLWWNNAARHLLGLT-WPGDEGQRISNLLR-----------QPEFK 152

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             + +  +    L     +     LE  ++P    Q +L   +++ + R E         
Sbjct: 153 EFLDTATEHTAPLTMPSPVSPRRTLELRLVPYGRNQRLLIARDISRTQRLE--------- 203

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
                 I+  FV +VS+EL++PLT I G  + +    L       +  +  +   S  + 
Sbjct: 204 -----TIRRDFVANVSHELKTPLTVIYGVAEEMGEE-LAPEQPAWAGSIRLLQDQSARMQ 257

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            LV D+L L+ ++ G + +    + +  LL EV     T   E+  RI++ ++  +    
Sbjct: 258 RLVQDLLTLSRLETGSLAVEEDPVDMKVLLEEVCAEAQTLSGEHQHRIELDAEPGV-FVR 316

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
                L    S ++SNA+ ++  G T+ ++   D       V ++G  IP +    +  R
Sbjct: 317 GSYGELRSAVSNLVSNAVRYTPAGGTIRVRWRADAHSARCGVADSGIGIPREHIPRITER 376

Query: 742 FVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           F            G GLGL+IV+  ++ HGG +++ S  +  +T     P++
Sbjct: 377 FYRVDKGRSNATGGTGLGLAIVKHVMHRHGGWLNVDSEPDQGSTFTLVFPAR 428


>gi|197263365|ref|ZP_03163439.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197241620|gb|EDY24240.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 920

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|312135254|ref|YP_004002592.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311775305|gb|ADQ04792.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 467

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 4/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               E L   + ++ SF+ +VS+ELRSPLT+I GF + +    +   + K+  Y+  +  
Sbjct: 234 NYMTEKLENLETMRKSFISNVSHELRSPLTSIRGFVEGILDKTIP--DEKRDFYLTLVKE 291

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L NL+N +L+L+ ++ G + LN S   +  ++ E       ++ E NI I V  D 
Sbjct: 292 EVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSVIAEELIKFEKRIEEKNIDIDVQVDE 351

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +L    ADR  + ++   +L NA+ ++  G  + + +   NG    ++++ G  IPE + 
Sbjct: 352 EL-VVKADRDLISRVIHNLLDNAIKYNKVGGKIYIYSEVANGKAYITIQDTGVGIPEKLQ 410

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K ++ RF           GVGLGLSIV+  I LH  ++ + S +   +     +
Sbjct: 411 KLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHKQNIWVESEEGIGSKFIFTL 464


>gi|227536008|ref|ZP_03966057.1| two-component sensor histidine kinase, phosphate regulation
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244121|gb|EEI94136.1| two-component sensor histidine kinase, phosphate regulation
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 343

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 115/239 (48%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +    + + LR  ++ +  F+ ++S+E ++PL  I G+ + L+   +         +++ 
Sbjct: 100 KEKKSEIDKLRSQEKFRREFLSNISHEFKTPLFAIQGYIETLQDGLIEEDPEMAKGFLDK 159

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            S +   L  L++D+ +++ +++G + LN     L++L+ E  +++  K     I I   
Sbjct: 160 ASKNLDRLSYLIHDLDEISKLESGRISLNIEKFDLSELIKETIENLDDKAKSQKIDIVFK 219

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
              +  +FV ADR+++ Q+ + ++ N++ +   G +  ++        +  V ++G  I 
Sbjct: 220 QKYQNVTFVKADRKKIQQVLTNLIDNSIKYGKTGGSTDIRIFPLFEQVLVEVTDDGQGIE 279

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           E     VF RF        R   G GLGL+IV+  +  H  +V++ S++   TT    +
Sbjct: 280 EKNLPRVFERFYRTDKSRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTL 338


>gi|77408345|ref|ZP_00785086.1| sensory box histidine kinase [Streptococcus agalactiae COH1]
 gi|77173026|gb|EAO76154.1| sensory box histidine kinase [Streptococcus agalactiae COH1]
          Length = 449

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 142/374 (37%), Gaps = 35/374 (9%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE + N L       + ++++GV      G+I + N   +  +    +       I ++
Sbjct: 87  NLEQEKNRL----ASILTYMTDGVLATDRSGKIVMINETAQQQFNLAYDEALSMN-IVDM 141

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             + S Y  +         ++   D+  + +   +    +      I  L          
Sbjct: 142 LGSGSPYSFQDLVSKTPEVVLNRRDENGEFVTLRIRFALNRRESGFISGLV--------- 192

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
                     A++       K +  +  FV +VS+ELR+PLT++  + + L     G+LN
Sbjct: 193 ----------AVSHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDE---GALN 239

Query: 604 SKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
            + +  +++     +  ++ +++D+L L+ +D  +  L+         +  +        
Sbjct: 240 EEVAPSFIKVSLDETNRMMRMISDLLSLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIR 299

Query: 663 HENNI-----RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           ++  +      I      K      D  ++ Q+   IL+NA+ +S  G  + +       
Sbjct: 300 NQKTVTGKVYEIVRDYPLKSIWVEIDTDKMTQVIDNILNNAVKYSPDGGKITVNLRTTKT 359

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I S+ + G  IP+     +F+RF         Q+ G GLGLSI +  +  H G +   
Sbjct: 360 QMILSISDQGLGIPKKDLPLIFDRFYRVDKARSRQQGGTGLGLSIAKEIVKQHKGFIWAK 419

Query: 776 SSDEGVTTINCRIP 789
           S     +T    +P
Sbjct: 420 SEYGKGSTFTIVLP 433


>gi|327482207|gb|AEA85517.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri DSM
            4166]
          Length = 1388

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 185/511 (36%), Gaps = 32/511 (6%)

Query: 297  KEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +  +  D+ +   + L NL     +A    D+   +++      +++ +       N + 
Sbjct: 750  ELKSKVDETSKINDDLQNLISSTDIATVFVDRKMRIKWFTPRARDIFNV-----IGNDAG 804

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPRGG 411
              L +     +      +     E +  V +     +   W+L   + L      +   G
Sbjct: 805  RSLFDITHRLDYPLLAKDAAEAFEELHLVEREVRDREGQHWYLA--RFLPYRTLDDRIEG 862

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWKT 469
             +  F ++T +   E +     +   + +   ++G  +     DG I   N     +   
Sbjct: 863  AVLTFIDITDRRRAEEELRA-GEAHLKLLAQSTKGYAIITLDCDGLITTWNCGAELILGY 921

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLE 527
             E  +  G  +  I     R     +     A       DER      G+   LS     
Sbjct: 922  RETEVL-GQTVDIIYTEQDRQAGVPEAERQRALQHGQATDERWHARRDGSRCFLSGL--- 977

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADEIKNSFVQHVSYELRS 582
              + PL +    +           E          + E+++ A+  K+ F   +S+EL+ 
Sbjct: 978  --LNPLVDGTGKVIGFAKIARDLTEERQRSSEQQNELESVQAANLQKDQFFAVLSHELKH 1035

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL  I   TDL+  S+    N    +  + I  +      +++D++D++ +  G +KL++
Sbjct: 1036 PLNLIQLNTDLVARSQAVKNNPSLHKATQSIQNAVRSQSRIIDDLMDVSRIRTGKLKLHF 1095

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            +T+   D+L  ++   A      NI  +           AD  RL QI   +L+NA  F+
Sbjct: 1096 ATLRYQDVLRGIEAVFAPLAQSENISFESFKPDAPIYIQADPTRLDQIIWNLLNNAWKFT 1155

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN---AHRGQRRGVGLGLS 759
              G  + ++  R+       V + G  I  D    VF+ F        +  + G+G+GL+
Sbjct: 1156 KGGQRICMQLEREGDQARLDVIDTGEGISADFLPKVFDMFGQAEMQHAQRAKHGLGIGLA 1215

Query: 760  IVESFINLHGGHVSISSSD-EGVTTINCRIP 789
            +V+  +  H G +   S         +  +P
Sbjct: 1216 LVKQLVEAHNGRIEAYSEGIGRGARFSVWLP 1246


>gi|300770375|ref|ZP_07080254.1| sensor histidine kinase/response regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762851|gb|EFK59668.1| sensor histidine kinase/response regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 586

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 127/244 (52%), Gaps = 9/244 (3%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ L    E    A + K+ F+  +S+E+R+PL  IIG  DLLKT+K   L+  Q   +E
Sbjct: 200 QKELIASKEVAEAATKAKSKFIMTMSHEIRTPLNGIIGTIDLLKTTK---LDQNQQLLIE 256

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            + ASS IL +LV D+LD++ ++    ++NY+T  LN  L  +K  +   +    +++ +
Sbjct: 257 NLQASSHILSDLVTDLLDISRIETNKFEINYTTFNLNQSLTSLKHVVDPMLKSKGLKLNI 316

Query: 672 -ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFS--VKNNG 727
             ++      + D  R  QI   +LSNA+ F+ KG+ TV +     +  ++    VK+ G
Sbjct: 317 RTAENTPPELITDEARFKQILLNLLSNAIKFTLKGNITVYISYILFHDKYVLECKVKDTG 376

Query: 728 SSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ++    +F++F           +G+GLGL+I +  +++ GGH+ + S     TT  
Sbjct: 377 IGIKKENIARLFDQFSQIEEPQIPVNKGIGLGLAICQRLLHILGGHIEVESVYGIGTTFT 436

Query: 786 CRIP 789
             +P
Sbjct: 437 FCLP 440


>gi|116621999|ref|YP_824155.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225161|gb|ABJ83870.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 626

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 119/253 (47%), Gaps = 13/253 (5%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R    L E  +  + A   K+ F+ ++S+ELR+PL  I+GF+ L++      L+  Q +
Sbjct: 144 QRRTAELVEARDQAQAASRAKSVFLANMSHELRTPLNAILGFSKLVRGGP--GLSEVQRK 201

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            ++ IS S   LL++++++LD A ++ G +    + + L+ +++EV + +  +    N+ 
Sbjct: 202 DLDIISRSGAHLLDMIDEVLDRAKIETGGVTTKKTAVDLHRVVHEVVELMRPRAQAKNLE 261

Query: 669 IKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GD------- 718
                         +D  +L Q+   +  NA+ F+ +GS V L+   +   GD       
Sbjct: 262 FVFEHPETYPYCIRSDAGKLRQVLLNLTGNAIKFTQRGS-VTLRLWLEPMAGDAPGSQML 320

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
               V + G  I  +  + +F  F    + G  RG GLGLSI   F+   GG +++ S  
Sbjct: 321 LTLDVSDTGIGIAPEDQERIFEPFAQAGNGGAARGTGLGLSISREFVRAMGGSLAVQSIL 380

Query: 779 EGVTTINCRIPSK 791
              +  +  +P +
Sbjct: 381 RVGSRFHVELPVE 393


>gi|297530123|ref|YP_003671398.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297253375|gb|ADI26821.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 457

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 5/250 (2%)

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                +  +  RA+      L    + ++ F+  +S+ELR+PLT + G+ D+ +   L  
Sbjct: 209 MKGNDELAQLGRAIQTLANDLAYLKQERSEFLASISHELRTPLTYVKGYADIARRPHLS- 267

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
              +++ Y+  I   +  +  +V D+ +LA ++    ++      L   L ++ + +   
Sbjct: 268 -EEQRANYMAIIYEEAEKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPA 326

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             E ++ +     G + + + DRQR  Q+   +L NA  ++  G+TV +         + 
Sbjct: 327 FQEKSLSLVCQCPGSVMAAI-DRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQKQGIVI 385

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDE 779
           +V + G+ IP +    +F RF        R   G GLGL+I +  +  HGG ++  S   
Sbjct: 386 AVSDEGTGIPPEDVPRIFERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQG 445

Query: 780 GVTTINCRIP 789
             TTI   +P
Sbjct: 446 KGTTIIMTLP 455


>gi|322419410|ref|YP_004198633.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125797|gb|ADW13357.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 691

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/407 (20%), Positives = 164/407 (40%), Gaps = 48/407 (11%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--------S 475
            L T      ++    ++  S+ + V G D  I++ N      +  E   L         
Sbjct: 277 TLSTDLERSEELYKSLMEDASDAIVVIGADESIRMVNKMAEEFFGYEAKELVGLPLTKML 336

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +I NI      +   ++G  +   +  S    RK   G + +L  S    SI     
Sbjct: 337 LLLNISNIPKVHRIFRVAAEGAHIAEEMQLS----RKEGAGMVAMLHAS----SIKSGSE 388

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                 F +VT        L + +  L + + +K+SF+   S+EL++PLT I+G+++L+ 
Sbjct: 389 TLVQAIFRDVTREREIIMNLEKSSADLARLNRMKDSFLGLASHELKTPLTVIMGYSELIT 448

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           T     ++    + V  I+ ++  L N++ D++D++ +D   ++L    I LN L+    
Sbjct: 449 TDLADKVDKTVLEMVVNIANAAARLDNIIKDMVDVSMIDEKRLQLKVEDIQLNRLIEASV 508

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--- 712
             +          + +  D  L +   D  RL+Q+ S IL NA+ F+  G  + + +   
Sbjct: 509 NELRFFFSMRKQEVVLNLDESLPTIRGDALRLMQLLSNILGNAIKFTPDGGRITVSSSAK 568

Query: 713 ---------------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRG--- 749
                             +     ++ + G  I  +    VF++F           G   
Sbjct: 569 YLLRGPAGAEVGQQGREHHLFLEITITDTGIGIDREDQLRVFDKFYEVGNIQEHSSGKVA 628

Query: 750 -QRRGVGLGLSIVESFINLHGGHVSISSS---DEG--VTTINCRIPS 790
            + +G GLGLSI +  +++HGG + + S+    E    +T +  +P 
Sbjct: 629 FKAKGAGLGLSIAKGIVDMHGGEIWVESTGYNPERFPGSTFHILLPL 675


>gi|239831142|ref|ZP_04679471.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG
           3301]
 gi|239823409|gb|EEQ94977.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG
           3301]
          Length = 430

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 154/369 (41%), Gaps = 30/369 (8%)

Query: 430 NTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           N +  V GE + D L++ + VF   G +  +N A    +++ +                 
Sbjct: 83  NEMAGVSGERLADLLTDPMVVFDHGGTVLFTNSAAIEAFQSLKT-----------GTALY 131

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
             +   +   L   +I   D E +S++    +  D   +  +  LP          +   
Sbjct: 132 LRFRAPEMHALIQGVIA--DGEARSIEYFERVPIDRWFKAMVKALPGKDGRPELFVLLFR 189

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            ++E          R+ D +++ F+ + S+ELR+PL ++ GF + L+     +  + + +
Sbjct: 190 DQSE---------TRRIDRMRSDFIANASHELRTPLASLRGFIETLQ-GPARNDAAARDR 239

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ +   +  +  L++D+L L+ ++          + +  +LN V  ++A      +I 
Sbjct: 240 FLDIMQKQAERMSRLIDDLLSLSRLEMRAHLTVNECVDMTSILNHVADTLAPLAAGLDIN 299

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVK 724
           I+ +           R  L+Q+F  ++ NA  +   G  VI+K   D+     + + S++
Sbjct: 300 IERVLPDHPVMVTGARDELIQVFQNLVENACKYGQAGKRVIVKLDEDDSGSSPEVVASIQ 359

Query: 725 NNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I  +    +  RF          ++G GLGL+IV+  +  H G + + S     +
Sbjct: 360 DFGPGIAAEHLPRLTERFYRIDVETSRAQKGTGLGLAIVKHILARHRGRLVVRSQLGEGS 419

Query: 783 TINCRIPSK 791
           T   R+P +
Sbjct: 420 TFTVRLPKR 428


>gi|167821444|ref|ZP_02453124.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 91]
          Length = 391

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 6/238 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +       ++ +K+  +  VS+ELR+PL  I G+ ++L+    G+L   Q Q ++ I  
Sbjct: 2   RDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGAL---QQQAIDAIDR 58

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  L  +V DILD +++  G ++L+   + L  ++N+V  ++      + I + V    
Sbjct: 59  SARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECAL 118

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D +RL Q+ S +LSNA  F+ +G  V +   R +     +V + G  I  +  
Sbjct: 119 ATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLERHDAQAKLTVADTGQGISPEFL 178

Query: 736 KSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
             VF  F     A    RRG+GLGLSIV     LHGG V  +S+     TT    +P+
Sbjct: 179 PHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLPA 236


>gi|126699182|ref|YP_001088079.1| putative two-component histidine kinase [Clostridium difficile 630]
 gi|255100704|ref|ZP_05329681.1| putative two-component histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|115250619|emb|CAJ68443.1| Two-component sensor histidine kinase,sporulation-associated spo0A
           [Clostridium difficile]
          Length = 618

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 164/393 (41%), Gaps = 31/393 (7%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQGETIDH-LSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           GTI + +N+         YN+  K   + I+H + E +      G     N  F +L   
Sbjct: 216 GTIGIVDNIIYSGYSNRNYNS--KDLMKMIEHSIPENMFYKDVYGNYIGFNSGFLNLACM 273

Query: 470 EENRLSPGTH--IRNIAATCSRYYNESDGWDLFAAIIT-----SFDDERKSLQGTLELLS 522
            +  L       I    A   + +    G      ++T     S +DE K ++ T     
Sbjct: 274 NKEELLGKNSYKISEEEALIDKIFESDKGVVENKKVVTFELNISMNDENKCIEITKRPFF 333

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           DS      I       + T  +++   R E  +          D+ +  F  ++S+ELR+
Sbjct: 334 DSYGSVIGI-------IGTARDISRRKRLEEEM----------DKTRMEFFANLSHELRT 376

Query: 583 PLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           P+  I     ++  K + L   N    + +  I  +   +L LVN+++D   + +G +  
Sbjct: 377 PINLISSSLQVIEKKEADLIESNDTLKRNLGIIKQNGNRILRLVNNVIDFTKMQSGYLDF 436

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                 +   + E+  S+A    +NNI++   ++ +  S + D ++L +I   +LSN + 
Sbjct: 437 KPEESDIIAFIEEICMSVADFASQNNIQLTFDTEIEEFSMLFDSEKLERIILNLLSNGIK 496

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGL 758
           ++ K   + +     +  F   + ++G  IP++    +FNRF    +    + +G G+GL
Sbjct: 497 YNKKDGKINIFLYVKDNVFNMKISDSGIGIPKEKIDKIFNRFEQIDNELSYRVKGSGIGL 556

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           S+V+S + LH G +S+ S     +     +P +
Sbjct: 557 SLVKSLVELHEGSISLKSQLGIGSEFIVSLPVR 589


>gi|16760519|ref|NP_456136.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|25512282|pir||AD0700 probable two-component sensor kinase ssrA [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502815|emb|CAD01973.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 920

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|300718620|ref|YP_003743423.1| Aerobic respiration control sensor protein [Erwinia billingiae
           Eb661]
 gi|299064456|emb|CAX61576.1| Aerobic respiration control sensor protein [Erwinia billingiae
           Eb661]
          Length = 776

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 146/375 (38%), Gaps = 14/375 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E +  + + + +           +D   + V     D +    N A   L    E +L  
Sbjct: 138 EEMARREEAQIELEQQSSFLRSFLDASPDLVFYRNIDQQFSGCNRAMELLTGKSEKQLIG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         +    E+D       +  +++   +   G       +  E   +P  + 
Sbjct: 198 LTPRDVYDEDAATKVLETDDKVFRHNVSLTYEQWLQYPDG-----RKACFEIRKVPYYDR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               + +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 253 IGKRSGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLD 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q +Y++ I  S+  L N+ ND++++  ++   ++L+   +     L +++ 
Sbjct: 311 T---DLNQEQLKYLKTIHVSAITLGNIFNDVIEMDKIERRKVQLDIQPVDFTGFLADLEN 367

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                     ++  +     L    + D  RL QI   ++ NA+ F+ KGS ++  A   
Sbjct: 368 LSGLLAQPKELKFVLDPQLPLPHKIMTDGTRLRQILWNLIGNAVKFTQKGSIIVRVAYLG 427

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
                F V+++G  IP+D    +F  +     +   +   G G+GL++        GG +
Sbjct: 428 EDCLRFEVEDSGMGIPQDEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQSMGGDI 487

Query: 773 SISSSDEGVTTINCR 787
           ++ S+    +     
Sbjct: 488 TVHSAPGTGSCFTLT 502



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 27/206 (13%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI-----KIEGRVSGSCAFLRILSLDGIY 175
                +LS+  +KL +E +  DL    Q    I     +I  R+    A  R+  +  + 
Sbjct: 81  EESRQRLSRLVDKL-EEMRHRDLELNQQMKENITQLNHEIADRIKAEEA--RLQVMAKLK 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            E+A       +L    S  +   D+   LV++R+        N + +  T   G   ++
Sbjct: 138 EEMARREEAQIELEQQSSFLRSFLDASPDLVFYRNIDQQFSGCNRAMELLT---GKSEKQ 194

Query: 236 AIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIVRVL---- 283
            IG   R ++ E+   +++ +   +K F   VS           G    ++I +V     
Sbjct: 195 LIGLTPRDVYDEDAATKVLETD--DKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDR 252

Query: 284 --NSFGEAGIAIDVSKEITVNDQLTH 307
                G  G   D+++     D L +
Sbjct: 253 IGKRSGLMGFGRDITERKRYQDALEN 278


>gi|271498888|ref|YP_003331913.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
 gi|270342443|gb|ACZ75208.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
          Length = 779

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 146/375 (38%), Gaps = 14/375 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E +  +   + +      +    +D   + V     +      N A   L    + +L  
Sbjct: 138 EEMARREQAQVELEQQSALLRSFLDASPDLVYYRNENKEFSGCNRAMELLLGKSQKQLIG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         +    E+D       +  +++       G       +  E   +P  + 
Sbjct: 198 LTPKDVYPPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 253 MGKRHGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLD 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L+++Q +Y++ I  S+  L N+ NDI+++   +   ++L+   +     + +++ 
Sbjct: 311 TH---LDAEQQKYLKTIHVSAITLGNIFNDIIEMDKQERRKVQLDNQPVDFVGFVVDLEN 367

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                     +++++     L  + + D  RL QI   +LSNA+ F+ +G  V+      
Sbjct: 368 LGGLLAQPKGLQLEMELHQPLPKTIITDGTRLRQILWNLLSNAVKFTREGRVVVRVWHEQ 427

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
                F V+++G  IP D  + +F+ +     +   +   G G+GL++ +      GG +
Sbjct: 428 GNRLRFEVEDSGMGIPADELEKIFSMYYQVKDQHGGKPATGTGIGLAVSKRLAQSMGGDI 487

Query: 773 SISSSDEGVTTINCR 787
            ++S     +     
Sbjct: 488 HVTSELGKGSCFTLT 502



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 77/199 (38%), Gaps = 22/199 (11%)

Query: 124 YIKLSKATEKLRKEGQSFDLVAET-QNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
             +L    E++R+  Q  +   +   +    +I  R+    A  R+L +  +  E+A   
Sbjct: 87  LSRLVAKLEEMRQRDQELNEQLQGNISQLNQEISDRIKAEEA--RLLMVSKLREEMARRE 144

Query: 183 LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIG-ESR 241
               +L    ++ +   D+   LV++R++  +    N + +      G   ++ IG   +
Sbjct: 145 QAQVELEQQSALLRSFLDASPDLVYYRNENKEFSGCNRAMELLL---GKSQKQLIGLTPK 201

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIVRVL------NSFGE 288
            ++  +I ++++ +   EK F   VS           G    +++ +V          G 
Sbjct: 202 DVYPPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRMGKRHGL 259

Query: 289 AGIAIDVSKEITVNDQLTH 307
            G   D+++     D L +
Sbjct: 260 MGFGRDITERKRYQDALEN 278


>gi|110834847|ref|YP_693706.1| two-component sensor histidine kinase protein [Alcanivorax
           borkumensis SK2]
 gi|110647958|emb|CAL17434.1| two-component sensor histidine kinase protein, putative
           [Alcanivorax borkumensis SK2]
          Length = 1144

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 121/254 (47%), Gaps = 6/254 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT +    +    + + AL +  E    A++ K+ ++  +S+ELRSPL    G+  LL+ 
Sbjct: 665 QTRMLMEEIKAHEKTDLALQQAKELAESANQAKSRYLTGLSHELRSPLNAAFGYAQLLEQ 724

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               ++   +   +  I  S+  L +L+  +L+++ ++AG ++L  + + + +L++E+  
Sbjct: 725 DP--TIPENRRDAIGAIRRSTEHLSDLIEGLLEISKIEAGRLELYRNQVCVPELIDELVT 782

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  E  I  +  S  ++ ++V  D +RL QI   +LSNA+ F+ +G  V L     
Sbjct: 783 MFQLQAAEKGIGFEFRSKSQMPTWVTTDEKRLRQILINLLSNAIKFTREG-QVTLTFRYR 841

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           N    F + + G  I E+  K +F  F  V         G GLGL+I +   ++ GG + 
Sbjct: 842 NQVAEFVIADTGVGIDEEDLKRIFRPFERVRKPGTPSVHGTGLGLTITQLLADIMGGDIQ 901

Query: 774 ISSSDEGVTTINCR 787
           +SS     +     
Sbjct: 902 VSSIPGQGSEFRLS 915


>gi|320107428|ref|YP_004183018.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319925949|gb|ADV83024.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 448

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 154/390 (39%), Gaps = 40/390 (10%)

Query: 415 MFENLTVQVDLETKYNTLVKVQ-----GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           + E +T ++  E        +Q         D + + +       RI  +N   R L   
Sbjct: 83  LAETIT-RLSSEAAERLEEGIQIRLKMESVFDAMKDPIVAIDSFERILWTNHRMRRLMAR 141

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
             + L  G   R +  T           +  A +  + +    +    + LL       +
Sbjct: 142 SLSSLKIG---RALVETIRD-------PEALACVRRAMETGNPAKATKVLLLPGKTFTVN 191

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
            +P+ +   ++   ++T   + ER               +  FV +VS+ELR+PLT+I G
Sbjct: 192 AMPMMDGGVVVVLRDLTRIEQVER--------------TQREFVANVSHELRTPLTSIAG 237

Query: 590 FTDLLKTSKLGSLNSK--QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           + + L       + +K     ++  I+ ++  +  L  D+L LA +++   ++  + +  
Sbjct: 238 YVETLLEDPRLGVPNKGSARDFLGSIARNAARMTRLTEDLLALARIESKEHQVKPAPVDT 297

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF--SSKG 705
           N L+++   + +  + E    +            AD   ++Q+ S ++ NA+++  S+ G
Sbjct: 298 NTLIHDALDATSGFIREKEAVMDF-GTLTSEMIYADAGAIVQVLSNLIENAVNYGSSANG 356

Query: 706 STVILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSI 760
           + +++         G   FS+ +NG  I  +  + VF RF            G GLGL+I
Sbjct: 357 ARIVIAVDASRDTPGMMQFSITDNGPGIASEHLERVFERFYRVDQARAIGTHGTGLGLAI 416

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPS 790
             + +  HGG + + S     +  +  +P 
Sbjct: 417 ARNIVEQHGGTIWVESRLGKGSRFSFTLPL 446


>gi|190344318|gb|EDK35970.2| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 665

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 13/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+PL  IIG T L   ++   L   Q + +  +   + 
Sbjct: 26  REAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLSLDTE---LTQYQREMLSIVHNLAN 82

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      L   +    +++A K  E ++ +    D    
Sbjct: 83  SLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALKTLAVKAIEKSLDLTYQCDSSFP 142

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFS--VKNNGSSI 730
            + + D  RL Q+   +  NA+ F+ +G          K   D+   +    V + G  I
Sbjct: 143 DNLIGDSFRLRQVILNLAGNAIKFTKQGKVSVSVKKSSKVVEDSDKLLLEVCVSDTGIGI 202

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +D    +F+ F        R   G GLGLSI +  I L GG + ++S     +     
Sbjct: 203 EKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLILLMGGEIWVTSDYGSGSNFYFT 261


>gi|170026131|ref|YP_001722636.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
 gi|169752665|gb|ACA70183.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
          Length = 939

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L++ Q +  E     S  LL +
Sbjct: 393 QANRRKSDHLTTISHEIRTPLNGALGAVELLQNT---PLDAGQMRLAETAHQCSLSLLAI 449

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +N++LD + +++G M L+     L  LL++   +I ++    ++ +       +      
Sbjct: 450 INNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELEL 509

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI   +L NA+ F+ +G  + L+  R N    F+V++ G  I     +++F  F
Sbjct: 510 DTLRLRQILVNLLGNAVKFTPQG-RIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPF 568

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +        +G GLGL+I ++   + GGH+++ S     +  +  +P
Sbjct: 569 MQ--TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLP 613


>gi|51594666|ref|YP_068857.1| two-component sensor/regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|186893669|ref|YP_001870781.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
 gi|51587948|emb|CAH19551.1| two-component sensor/regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|186696695|gb|ACC87324.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
          Length = 939

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L++ Q +  E     S  LL +
Sbjct: 393 QANRRKSDHLTTISHEIRTPLNGALGAVELLQNT---PLDAGQMRLAETAHQCSLSLLAI 449

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +N++LD + +++G M L+     L  LL++   +I ++    ++ +       +      
Sbjct: 450 INNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELEL 509

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI   +L NA+ F+ +G  + L+  R N    F+V++ G  I     +++F  F
Sbjct: 510 DTLRLRQILVNLLGNAVKFTPQG-RIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPF 568

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +        +G GLGL+I ++   + GGH+++ S     +  +  +P
Sbjct: 569 MQ--TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLP 613


>gi|168052144|ref|XP_001778511.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162670109|gb|EDQ56684.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 328

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 117/234 (50%), Gaps = 12/234 (5%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A   K+ F+ ++S+E+R+P+  I+G T LL  S+   L   Q++ +E +   + +LL++
Sbjct: 1   QASHAKSDFLANMSHEIRTPIHGILGLTALLLESE---LTPDQTESLESVKECADLLLHI 57

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +N +LDLA ++AG +++      +  +++   + +  +  +  +++    D  +  + V 
Sbjct: 58  INSVLDLAKIEAGRLEVEKVPFNIRKMVSSTFRMLQARAQQRGLKLLWEVDKCVPQTLVG 117

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKS 737
           D  +L Q    ++ N++ F+ KG  V +K + +       +  F V++ G  I ++    
Sbjct: 118 DVGKLQQCLLNLVGNSLKFTHKG-LVTVKGSLNQEAPGRVNVEFEVRDTGIGISQEKLLD 176

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +F  F        R   G GLGL IV+ F+ L GG +S  S     +    R+P
Sbjct: 177 MFKPFTQAEASTSRLYGGTGLGLCIVQRFVELLGGTISAESELGKGSAFYIRLP 230


>gi|167551639|ref|ZP_02345393.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323546|gb|EDZ11385.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 920

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|253700507|ref|YP_003021696.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251775357|gb|ACT17938.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 694

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 159/410 (38%), Gaps = 54/410 (13%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL--------S 475
            L T      ++    ++  S+ + V G D  +++ N      +  +   L         
Sbjct: 280 RLSTDLERSEELYKSLMEDASDAIVVIGGDESVRMVNKMAEEFFGYDAKELLGLPLTKML 339

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
              +I NI     R + E+      A  +     E  ++   L   S          + +
Sbjct: 340 LLLNISNIPK-VHRIFREAAQGAHIAEEMQLCKKEGGAMVAMLHASS----------IKS 388

Query: 536 AQTMLTFVNVTDSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
               +      D  R       L + +  L + + +K+SF+   S+EL++PLT I+G+++
Sbjct: 389 GSENVVQAIFRDVTREREIILNLEKSSADLARLNRMKDSFLGLASHELKTPLTVIMGYSE 448

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L+ T     ++    + V  I+ +++ L N++ D++D++ +D   ++L    I LN L+ 
Sbjct: 449 LITTDLADRIDKTVLEMVVNIANAASRLDNIIKDMVDVSMIDEKRLQLKVEDIQLNRLIE 508

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                +          + V  D  + +   D  RL+Q+ S IL NA+ F+  G  + +  
Sbjct: 509 ASVNELRFFFSMRKQEVVVNLDESIPTIRGDALRLMQLLSNILGNAIKFTPDGGKITIST 568

Query: 713 ------------------ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-----SNAHRG 749
                                +     +V + G  I  +    VF +F           G
Sbjct: 569 SAKYLLRGKAGSDGSAEGREHHLFLEITVTDTGIGIDREDQLRVFEKFYEVGNIQEHSSG 628

Query: 750 ----QRRGVGLGLSIVESFINLHGGHVSISSS---DEG--VTTINCRIPS 790
               + +G GLGLSI +  +++HGG + + S+    E    +T +  +P 
Sbjct: 629 KVAFKAKGAGLGLSIAKGIVDMHGGEIWVESTGYNPERFPGSTFHILLPL 678


>gi|229182984|ref|ZP_04310216.1| hypothetical protein bcere0004_5630 [Bacillus cereus BGSC 6E1]
 gi|228600441|gb|EEK58029.1| hypothetical protein bcere0004_5630 [Bacillus cereus BGSC 6E1]
          Length = 463

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 7/253 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 208 TTTRNDEIGELSSSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKE--- 264

Query: 601 SLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           + + KQ  +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + + 
Sbjct: 265 TTSPKQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVN 324

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
               E  I +       L     D QR  Q+   IL+NA   S + S + +    ++   
Sbjct: 325 AMYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSHINISVTEEHKRI 383

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG ++++S 
Sbjct: 384 SITIEDEGEGIPSEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSE 443

Query: 778 DEGVTTINCRIPS 790
            +  +     +PS
Sbjct: 444 VDHGSCFIISLPS 456


>gi|89067396|ref|ZP_01154909.1| hypothetical protein OG2516_11166 [Oceanicola granulosus HTCC2516]
 gi|89046965|gb|EAR53019.1| hypothetical protein OG2516_11166 [Oceanicola granulosus HTCC2516]
          Length = 540

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 156/396 (39%), Gaps = 17/396 (4%)

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKK 224
            +R+              L    +   +   + L +    L+W +D  G + WAN +Y  
Sbjct: 131 LVRLSLHGAAGGAAGFAPLTLAAMEEELETLRSLGEDAPQLIWRQDADGTVSWANRAYLD 190

Query: 225 NTETEGIVFQKAI--GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV 282
                      A        +F E        +   ++         + G    +++  V
Sbjct: 191 TAARAAGAPAGAAPSWPPPAIFGEIDPPEADGAGDQQR----RAVRTQSGEELWFEVTSV 246

Query: 283 LNSFGEAGIAID----VSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL 338
                    A+D    V  EI   + +    +   +L + +AIFD++R L   N S ++L
Sbjct: 247 RRGDSFVHFALDAAPAVRAEIAQRNFVQTLSKTFADLAIGLAIFDRDRRLVMFNPSLMDL 306

Query: 339 WEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSV--YKSSETHKDTWHLPN 396
             + + FLAT P     L+ LR    LPE  N+++W+E + ++    S  T+ +TW LP 
Sbjct: 307 TRLPIDFLATKPPIQSFLDRLRELRMLPEPRNYRSWREELAALVAEASEGTYCETWMLPA 366

Query: 397 GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
           GQT  V    +P G   ++ E++T ++ L  ++ T +       D L E +AVFGP G +
Sbjct: 367 GQTFRVTGRPHPDGAIAFLIEDITAEMSLTRRFRTQIDTANAVFDTLDEAIAVFGPTGTL 426

Query: 457 KLSNPAFRSLWKTEENRLSPGT-HIRN--IAATCSRYYNESDGWDLFAAIITSFD--DER 511
            ++N A+  LW         G   +R   +      +       DL+A I  S     ER
Sbjct: 427 TMANAAYDGLWARPAPPPGDGELPLREPRLGDEIDTWRGACAPTDLWADIRDSAAGVGER 486

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           +   G        V+   + PLP   T++ F    +
Sbjct: 487 RPWSGRARRDDGRVMRCRVAPLPGGATLVGFSLTME 522


>gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1343

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 126/268 (47%), Gaps = 8/268 (2%)

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            ++ +  I +   +      ++   ++ ER     +E  ++ +E+K  F  ++S+ELR+PL
Sbjct: 787  IIAFISIVIFVFRYFWMRKSMEAKLQMER---VDSERQKEMNEMKLRFFINISHELRTPL 843

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            T I+     +          KQ ++V+    ++  LL+LVN ++D    + G+  L    
Sbjct: 844  TLILAPVQEMLDRVSDRWLHKQLEHVQ---KNTNRLLHLVNQLMDYRRAELGVFNLKVRL 900

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
              ++D++ +             I     S+ +    + D   +  I + +LSNA  ++ +
Sbjct: 901  TPIHDVIEKNFLFYDRLAQRKRISYNFNSNVEGREILCDPDYMELIVNNLLSNAFKYTGE 960

Query: 705  GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESF 764
            G +V +    +N + +  VK+ G+ IP D    +F RF    +  +  G G+GLS+V+  
Sbjct: 961  GKSVTVTLQEENHELLLRVKDTGNGIPIDKQGKIFERFYQIDN--EHLGSGIGLSLVQRL 1018

Query: 765  INLHGGHVSISSSDEGVTTINCRIPSKE 792
             +LH G + + S +   +T +  +P++E
Sbjct: 1019 ADLHHGRIELESEEGAGSTFSVYLPTEE 1046


>gi|326799510|ref|YP_004317329.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
 gi|326550274|gb|ADZ78659.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
          Length = 677

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 149/378 (39%), Gaps = 22/378 (5%)

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           F N   ++  E       +     ++    G+      G +  +N  F  +     + + 
Sbjct: 319 FWNRYERLRAEEALRKSEESYRAIVNQSIVGILRLNFRGEVVFTNDQFCKMLGYSPSEMM 378

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
             T +  +        +      LF+ ++          +   +  S   +   + P+ N
Sbjct: 379 KLTVLDLMYPE-----DLERNNLLFSRMVAEGTPYEIEKRLICKNGSLIWVNNHVSPIFN 433

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +        V       +            +++K+ F+   S+EL++PLT+I  +T LLK
Sbjct: 434 SDGKPESAVVVSVDVTRQK---------AVEKMKDDFIGVASHELKTPLTSIKAYTQLLK 484

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            S      +    ++  +S     L NLV  +LD + +  G + L    I LN+L+++  
Sbjct: 485 KSTTDDTPA---SFINKLSKQVDRLTNLVYLLLDTSNISGGHLMLQLGDIDLNELIDDCI 541

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           Q +     ++ +        K+   +AD+ R+ Q+ + ++SNA+ +S +G  V +KA   
Sbjct: 542 QDLQPISIDHKLIFH---KEKIPHLIADKNRINQVLTNLISNAVKYSPEGGAVHIKATDM 598

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVS 773
                 SV++ G  I  +    +FNRF     +G     G+GLGL IV   +  H G + 
Sbjct: 599 GYAVKVSVQDYGVGIAAEDQSKIFNRFFRVTSKGNDNISGIGLGLYIVSEIVKKHNGILG 658

Query: 774 ISSSDEGVTTINCRIPSK 791
           + S      T    IP +
Sbjct: 659 VESVPGQGATFFFEIPYQ 676


>gi|332535478|ref|ZP_08411259.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035088|gb|EGI71603.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 925

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 117/248 (47%), Gaps = 15/248 (6%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL +      +A E K +F+  +S+E+R+P+  +IG  DLL+ ++   L+  Q +    I
Sbjct: 263 ALEQATIKAERASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTE---LDGAQHRLSTII 319

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL++++DILD + ++AG + ++     + D + EV + +++   +  + +++  
Sbjct: 320 RESAFSLLSILDDILDFSKIEAGKLNIDPIPFSVTDTIEEVARVLSSVAKKRELDLELAI 379

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNG-----DFIFSV 723
              +      D  R+ Q+   + SNA+ F+S        V +     +         F V
Sbjct: 380 APDIPINLTGDSVRVRQVLYNLCSNAIKFTSTDEKTQGHVKISVEVVHNTTDHFTLRFCV 439

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +NG  + +   + +FN F+   +    +  G GLGLSI +S   L  G + ++S     
Sbjct: 440 TDNGKGMSQAQLREIFNPFIQAENSITREYGGTGLGLSICKSLTELMLGTIHVTSHTGIG 499

Query: 782 TTINCRIP 789
           +     +P
Sbjct: 500 SEFTVELP 507


>gi|323129664|gb|ADX17094.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 936

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 378 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 437

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 438 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 494

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 495 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 553

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 554 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 611

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 612 LKSVPGVGTCVSLVLPLQE 630


>gi|307277930|ref|ZP_07559014.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|306505327|gb|EFM74513.1| PAS domain S-box [Enterococcus faecalis TX0860]
          Length = 591

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   A  +      I L   + E
Sbjct: 391 LIDGAKED-PKVLDQFLHIMQKDAQRLQQLIQEILELSRGGA-TIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 449 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|291527505|emb|CBK93091.1| Signal transduction histidine kinase [Eubacterium rectale M104/1]
          Length = 479

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 4/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L      L   +E +  FV +VS++ RSPLT+I G+ + +    +      Q +Y+  I 
Sbjct: 239 LNYMATELDTLEEDQRKFVSNVSHDFRSPLTSIKGYVEAMLDGTIPV--EMQDKYLNIIL 296

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L   ++DL       + L+ +   +N ++     +   K  E  +   ++  
Sbjct: 297 FETERLNKLTKSLIDLNQFGHHGIHLDIADFDINTMIRTTILTFEGKCSEKGLSFDLLLT 356

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           GK      D  ++ QI   ++ NA+ FS+  S++ ++ +  N     SVK++G  IP+D 
Sbjct: 357 GKELFVRGDMVKIQQILYNLIDNAVKFSNNDSSIKIETSIRNEKVFISVKDHGIGIPKDS 416

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              ++ RF  +       +RG GLGLSIV+  +  HG ++++ S++   T     +P 
Sbjct: 417 LSKIWERFYKSDLSRGKDKRGTGLGLSIVKEIVQAHGENINVISTEGVGTEFIFTLPL 474


>gi|291524451|emb|CBK90038.1| Signal transduction histidine kinase [Eubacterium rectale DSM
           17629]
          Length = 479

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 4/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L      L   +E +  FV +VS++ RSPLT+I G+ + +    +      Q +Y+  I 
Sbjct: 239 LNYMATELDTLEEDQRKFVSNVSHDFRSPLTSIKGYVEAMLDGTIPV--EMQDKYLNIIL 296

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L   ++DL       + L+ +   +N ++     +   K  E  +   ++  
Sbjct: 297 FETERLNKLTKSLIDLNQFGHHGIHLDIADFDINTMIRTTILTFEGKCSEKGLSFDLLLT 356

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           GK      D  ++ QI   ++ NA+ FS+  S++ ++ +  N     SVK++G  IP+D 
Sbjct: 357 GKELFVRGDMVKIQQILYNLIDNAVKFSNNDSSIKIETSIRNEKVFISVKDHGIGIPKDS 416

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              ++ RF  +       +RG GLGLSIV+  +  HG ++++ S++   T     +P 
Sbjct: 417 LSKIWERFYKSDLSRGKDKRGTGLGLSIVKEIVQAHGENINVISTEGVGTEFIFTLPL 474


>gi|238925263|ref|YP_002938780.1| sensory transduction histidine kinase [Eubacterium rectale ATCC
           33656]
 gi|238876939|gb|ACR76646.1| sensory transduction histidine kinase [Eubacterium rectale ATCC
           33656]
          Length = 479

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 4/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L      L   +E +  FV +VS++ RSPLT+I G+ + +    +      Q +Y+  I 
Sbjct: 239 LNYMATELDTLEEDQRKFVSNVSHDFRSPLTSIKGYVEAMLDGTIPV--EMQDKYLNIIL 296

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L  L   ++DL       + L+ +   +N ++     +   K  E  +   ++  
Sbjct: 297 FETERLNKLTKSLIDLNQFGHHGIHLDIADFDINTMIRTTILTFEGKCSEKGLSFDLLLT 356

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           GK      D  ++ QI   ++ NA+ FS+  S++ ++ +  N     SVK++G  IP+D 
Sbjct: 357 GKELFVRGDMVKIQQILYNLIDNAVKFSNNDSSIKIETSIRNEKVFISVKDHGIGIPKDS 416

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              ++ RF  +       +RG GLGLSIV+  +  HG ++++ S++   T     +P 
Sbjct: 417 LSKIWERFYKSDLSRGKDKRGTGLGLSIVKEIVQAHGENINVISTEGVGTEFIFTLPL 474


>gi|218289691|ref|ZP_03493899.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240148|gb|EED07332.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 429

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 155/396 (39%), Gaps = 22/396 (5%)

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           + +                 F  +  ++       +    +    + +++ GV     DG
Sbjct: 46  DVRMYEYRSRPA-EIAIFRHFNRMAERIQETLADLSQERDILRHILQNMTTGVIYLRSDG 104

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           ++++ N A   L++    +     H      T  R Y      D      T         
Sbjct: 105 QVQMVNHAAERLFRRPVEQWKDRDHW-----TVFRNYQLGSAIDHALLFGT-------PW 152

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G  ++     +   ++P+  A  M    +    V     L       R+ + +++ FV 
Sbjct: 153 SGEFQIRDGVTVAVRLVPISAAPRMRNKADGRHDVLM---LVNDVSEWRRLERMRSDFVA 209

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+EL++P+  I GF + L    +      + +++  I   S  + NLV+D+L+L+ ++
Sbjct: 210 NVSHELKTPIAAIRGFAETLLDGDVD--EEAREKFLRTIYEESLRMGNLVSDLLELSKLE 267

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           A    ++   + L ++L      +    +E  I I++  + +L    A+   LLQ+F  +
Sbjct: 268 ASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRL-HVWAEPDLLLQVFLNL 326

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRR 752
           L+NA+ +S   S V +            VK+NG  IP++    VF RF            
Sbjct: 327 LTNAIHYSPPKSRVCVTWDVLVDRVKVHVKDNGIGIPKESLPRVFERFYRVHKDRSRASG 386

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+IV+  +   GG V + S +   +     +
Sbjct: 387 GTGLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTL 422



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 79/253 (31%), Gaps = 15/253 (5%)

Query: 291 IAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A  + +    ++ +      IL N+T  +     +  +Q  N +   L+   +      
Sbjct: 68  MAERIQETLADLSQERDILRHILQNMTTGVIYLRSDGQVQMVNHAAERLFRRPVEQWKDR 127

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             +  +    +  + +   L + T     F +            +P      +   ++ R
Sbjct: 128 -DHWTVFRNYQLGSAIDHALLFGTPWSGEFQIRDGVTVA--VRLVPISAAPRMRNKADGR 184

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRSL 466
              + +  +++    LE   +  V      +      +  F     DG +       + L
Sbjct: 185 HDVLMLVNDVSEWRRLERMRSDFVANVSHELKTPIAAIRGFAETLLDGDVDEE-AREKFL 243

Query: 467 WKTEENRLSPGTHIRNIAAT----CSRYYNESDGWDLFAAIITSFDDER---KSLQGTLE 519
               E  L  G  + ++        S  + +    DL+  ++ + D  R      + T+E
Sbjct: 244 RTIYEESLRMGNLVSDLLELSKLEASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIE 303

Query: 520 LLSDSVLEYSIIP 532
           L  +  L     P
Sbjct: 304 LPREQRLHVWAEP 316


>gi|294678370|ref|YP_003578985.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter capsulatus SB
           1003]
 gi|294477190|gb|ADE86578.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter capsulatus SB
           1003]
          Length = 817

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 143/367 (38%), Gaps = 23/367 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +  T         + +   V +   +G I+  N A   L   +    S         A 
Sbjct: 179 QRVVTEKNKYLTIFESIQTPVFLIDAEGAIENMNHAAALLLSKDVVPGSVYY-----GAA 233

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
             R +    G D         + E  ++ G    +S S  E   +      T+++F +VT
Sbjct: 234 ARRSFQGLFGLDPRGIGPLLPEHEIDTIDGR-RWVSVSTQEMLDVSRKFLGTVISFTDVT 292

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D            E        K  F+  +S+E+R+P+ +I G  +LL+      L  + 
Sbjct: 293 DER-------RAREEAEALARAKTDFLATMSHEIRTPIHSIGGIVELLRQ---DDLPPRA 342

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN- 665
           + YVE I  S+ +L ++V++ILD + ++AG M L      L ++  EV + I   +    
Sbjct: 343 AGYVEAIDRSARVLTSIVSEILDYSRIEAGGMMLERVDFPLGEVTAEVARVIEPLVARKP 402

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIF 721
            + + V +   L     D  +L QI   +  NA+ F+  G+ VI    +  +       F
Sbjct: 403 GLVLHVDAPADLPCVSGDPAKLRQILLNLAGNAVKFTEAGAVVIGLDLISRSPGRVLVRF 462

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
           SV++ G  I  +  + +F  F  +      +  G GLGL+I      L G  +++ S   
Sbjct: 463 SVRDTGPGIASERLEQIFRPFTQSDSSIERKHGGTGLGLAISRRLAELMGAELTVESHPG 522

Query: 780 GVTTINC 786
             +    
Sbjct: 523 EGSCFRL 529


>gi|254491421|ref|ZP_05104600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224462899|gb|EEF79169.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 779

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 117/257 (45%), Gaps = 33/257 (12%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    +  + A+E K+ F+  +S+ELR+PL  +IG  DL++ +K   LN +Q ++V  
Sbjct: 121 KKLHRALDTAKFANEAKSRFLASMSHELRTPLNGVIGVADLMQETK---LNPEQREFVRI 177

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  S+  LL L+ ++LD++ ++AG ++   S   L++L+  V +         +I +   
Sbjct: 178 MHNSANTLLGLIENVLDISKIEAGKIESIRSEFDLHELITTVIKMQRPMATAKDIALFCN 237

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNN 726
            D ++  +   D Q L Q+   ++ NA+ F++ G  + L         D     F +++ 
Sbjct: 238 MDPQIQFAVHGDPQHLKQVLINLIGNAVKFTTSG-YIRLSLQAQVSNTDEQVVRFEIRDT 296

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS------------IVESFINLHGGHVSI 774
           G  IP +   ++F+ F                +            I +  + L GG++ +
Sbjct: 297 GIGIPAESLDTIFDDFTQVNA-----------ASGTTSGTGLGTTISKELVELMGGNIGV 345

Query: 775 SSSDEGVTTINCRIPSK 791
           +S     TT    +P K
Sbjct: 346 TSQLGVGTTFWFELPLK 362


>gi|206895448|ref|YP_002246402.1| PAS/PAC sensor signal transduction histidine kinase
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738065|gb|ACI17143.1| PAS/PAC sensor signal transduction histidine kinase
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 699

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/494 (17%), Positives = 185/494 (37%), Gaps = 44/494 (8%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
           T   +IL  +  ++ +   +  +   NR   +L       L        + +        
Sbjct: 237 TAAEDILSTVADSLMLVGLDSRIVLANRKVHDLLGYKGEELKGKDIVSIVSDI------- 289

Query: 366 PEQLNWKTWKENIFSVYKSSETH--KDTWHLPNGQTLHVIVTSN-------PRGGTIWMF 416
                       I ++ +S   +  + T+   +G+ + V+V+++          G +   
Sbjct: 290 -----------EITAIVESGGVYSNETTFLTKSGKQVPVLVSASVVRDREEEVAGIVLTA 338

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
            +++ +  +E +     +     +DH   G+ +   D RI  +N    +++      L  
Sbjct: 339 LDISKRKQMEQELRASEEKYRTLVDHALVGIGI-HQDNRIVFANQRMATMFGYTLEEL-I 396

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G  I ++     R    +           S   E + L+         V    I      
Sbjct: 397 GLPIADLLHPEERSLVLARVNGTDPQPPESNTYETRLLKKDGSFFYALVSNSLITYNDRV 456

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T+ T  ++TD        T+  + L +A+    +F   VS++LR+PL +I GF+ +L  
Sbjct: 457 ATLFTISDITD--------TKARKELEEANRELEAFSYSVSHDLRAPLRSIDGFSQMLLE 508

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
                L+ +   Y++ I A++  +  L+ND+L L+ +      +++  + L  +  ++  
Sbjct: 509 DYADKLDDQGRDYLKRIRAATQRMSQLINDLLTLSRI--SRADMHFEELNLTAMAEDIAA 566

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAAR 714
            +     E ++   +  + K      D   L  +   +L NA  F+SK     +      
Sbjct: 567 ELKQSQPERDVEFIIEPNVKA---YGDSHLLRIVLENLLRNAWKFTSKHKSAIIEFGVKE 623

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            +G  ++ V++NG+         +F  F     + +  G G+GL+ V+  ++ HGG V  
Sbjct: 624 HDGKTVYFVRDNGAGFDMAYVDKLFVPFQRLHEQDEFEGTGIGLATVQRIVHRHGGTVWA 683

Query: 775 SSSDEGVTTINCRI 788
               E   T    +
Sbjct: 684 EGEVEKGATFYFTL 697


>gi|302384794|ref|YP_003820616.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302195422|gb|ADL02993.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 468

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 113/238 (47%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   +  L K ++ + +F+ +VS++ RSPLT+I G+ + +    +        +Y+  + 
Sbjct: 230 LNYMSAELGKMEDYQKTFIANVSHDFRSPLTSIKGYLEAILDGTIPP--EMHEKYLNRVI 287

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + +  L  L   +L L ++D+    LN ++  +N ++ +   S     +  NI   +   
Sbjct: 288 SETDRLNKLTQGLLTLNSLDSKGY-LNRTSFDINRVIKDTAASFEGTCNGKNITFDLTFS 346

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             +    AD  ++ Q+   ++ NA+ FS   ST+ ++A+        S+K+ G  IP++ 
Sbjct: 347 ESIQMVYADLGKIQQVLYNLIDNAIKFSHADSTIYIQASGKYEKIFISIKDTGIGIPKES 406

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            K ++ RF          ++G GLGL+IV   I  HG ++ + S++   +     +P 
Sbjct: 407 LKKIWERFYKTDSSRGKDKKGTGLGLAIVREIIQSHGENIDVVSTEGVGSEFIFSLPK 464


>gi|304312878|ref|YP_003812476.1| hypothetical protein HDN1F_32580 [gamma proteobacterium HdN1]
 gi|301798611|emb|CBL46841.1| Hypothetical protein HDN1F_32580 [gamma proteobacterium HdN1]
          Length = 874

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 13/249 (5%)

Query: 553 RALTEKNEALRKA--DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           R L  +   L++      K  F+  VS+E+R+P+  I+G  +LL  ++   L+ +QS+YV
Sbjct: 422 RQLGSEQGMLKEQAESRAKTEFLAKVSHEIRTPMNGILGLVELLGMTR---LSPEQSRYV 478

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I+++   L+ +VNDILD + +  G M LN     L +LL +          +  + ++
Sbjct: 479 SAINSAGHTLVEVVNDILDYSKLVIGKMTLNEQEFDLRELLEDCAVIFEMPARKKALDLR 538

Query: 671 V-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGD----FIFSVK 724
           + I  G       D  RL Q+   +LSNA+ ++  G   V L    +  D      F+V+
Sbjct: 539 IMIRAGVPLRIHGDAMRLRQVVLNLLSNAIKYTEYGHIFVRLSLTDEIQDDKVVLRFAVE 598

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I       +F  F    +    R  G GLGL I +  I L GG + + S+    +
Sbjct: 599 DSGCGIDRADQSRLFQSFSQIHNDITERETGTGLGLVISQQIIGLMGGTIGVDSTLGRGS 658

Query: 783 TINCRIPSK 791
                +P K
Sbjct: 659 VFWFTLPVK 667


>gi|226357941|ref|YP_002787681.1| histidine kinase, classic [Deinococcus deserti VCD115]
 gi|226320184|gb|ACO48177.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 944

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 110/678 (16%), Positives = 225/678 (33%), Gaps = 68/678 (10%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISV----FKVLFDSLDFLVWHRDQAGDI-----LW 217
           R   L  I +  A + L   +L     +    F+ L  +   +VW     G+       W
Sbjct: 277 RSERLATIIAAQAASALDNTQLKQDARMNERRFQSLVQASAQIVWSCTPHGEFPGEQPSW 336

Query: 218 ANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
           +  + +   +  G  +  AI    +  K+ ++  M +         +       G  +  
Sbjct: 337 SRFTGQNAEQQLGRGWLDAIHPDDR--KDVLQAWMRAVETQCLYEVQHRLRRHDGQYRFM 394

Query: 278 --KIVRVLNSFGE----AGIAIDVSKEITVNDQLTHTYEILHNL----TVAIAIFDQNRY 327
             +   VL+  G+     G   DV++      QL    E    L       +     +  
Sbjct: 395 QARATPVLSDNGQLVEWIGTHEDVTERHEAEMQLREREERYRALVEYTIAGVTRISLDGT 454

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET 387
               N +           LA       + +     +      +       + S   ++ T
Sbjct: 455 FIDVNPAAAAFLGYSQEQLAG----MSVKDVTHPDDL----NDTFAALGRVLSGEVAATT 506

Query: 388 HKDTWHLPNGQTLH----VIVTSNPRG---GTIWMFENLTVQVDLETKYNTLV------- 433
            +  +   +G  +     V V  +  G     I +  N+T +   E + + L        
Sbjct: 507 LEKRYVRGDGTIVWSNSGVTVVRSETGEPQYIIAVISNITERKLAEAELHRLNLELETRV 566

Query: 434 -----------KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
                      +     ++ L+EG+      G++ L N A    +      L P     +
Sbjct: 567 RDRTRDLEQERRFLRALLESLAEGIVACDAHGQVNLFNDASTRFFGLPAAPLRPIEWPAH 626

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDER-KSLQGTLELLSDSVLEYSIIPLPNAQT--- 538
                          ++      S +  R + +    E      +  S   +        
Sbjct: 627 FGLYQLDGLTPLSVEEVPLYRALSGEQVRDQPIVIAPERAPRRYVTASGSAIFGPGGEKL 686

Query: 539 --MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             ++   +VT    AE+A+    + L++++     F    S++L++PL  I     LL+ 
Sbjct: 687 GAVVALHDVTAQREAEQAVERVTQDLKRSNAELTRFAAVASHDLKAPLRTIGSQLQLLQR 746

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              G L+ K  + + +   ++  +  L++D+L  A +         + +  + ++ +V  
Sbjct: 747 RYGGQLDEKADRMISFTVEAANRMDALIDDLLAYAQLGQQR---RVTDVNAHLVMQDVLA 803

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAAR 714
           ++   +   N  + V   G L    AD     QI   ++ NA+ F   G    V + A +
Sbjct: 804 NLDATIQARNAHVSV---GHLPWVKADETLFRQILQNLVGNALKFQPTGRAPRVRVSAIQ 860

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           +     F+VK+NG  I       +F  F          G GLGL+IV   I    G + +
Sbjct: 861 ERAFVHFTVKDNGIGIAPAYFDQIFEVFHRLHAASVYPGSGLGLAIVRKSIEEQDGRIWV 920

Query: 775 SSSDEGVTTINCRIPSKE 792
            S++      +  +P+ +
Sbjct: 921 ESTEGEGAAFHFTLPAAK 938



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/442 (11%), Positives = 110/442 (24%), Gaps = 66/442 (14%)

Query: 44  LIRQRNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRI 103
           +I  + + A    +      +      ++ SL+  +    IVW       E  G+     
Sbjct: 284 IIAAQAASALDNTQLK---QDARMNERRFQSLVQASAQ--IVWSCTPHG-EFPGEQPSWS 337

Query: 104 DIPQTDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDL-----VAETQNDCAIKIEGR 158
                + +      WL   H        +   +  ++  L          +     ++ R
Sbjct: 338 RFTGQNAEQQLGRGWLDAIHPDDRKDVLQAWMRAVETQCLYEVQHRLRRHDGQYRFMQAR 397

Query: 159 VS-----GSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
            +            I    G + ++ E      +L      ++ L +     V      G
Sbjct: 398 ATPVLSDNGQLVEWI----GTHEDVTERHEAEMQLREREERYRALVEYTIAGVTRISLDG 453

Query: 214 DILWANISYKK----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL 269
             +  N +       + E    +  K +     L         + S  +     E     
Sbjct: 454 TFIDVNPAAAAFLGYSQEQLAGMSVKDVTHPDDLNDTFAALGRVLSGEVAATTLEKRYVR 513

Query: 270 EHGNNKSYK--IVRVLNSFGEAGIAIDV--------------------------SKEITV 301
             G        +  V +  GE    I V                           +   +
Sbjct: 514 GDGTIVWSNSGVTVVRSETGEPQYIIAVISNITERKLAEAELHRLNLELETRVRDRTRDL 573

Query: 302 NDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS 361
             +      +L +L   I   D +  +   N +    + +  A L           +   
Sbjct: 574 EQERRFLRALLESLAEGIVACDAHGQVNLFNDASTRFFGLPAAPLRPIEWPAHFGLYQLD 633

Query: 362 ANK---LPEQLNWKTWKENIFS---VYKSSETHKDTWHLPNGQTLHVIVTSNPRG---GT 412
                 + E   ++           +  + E     +   +G  +       P G   G 
Sbjct: 634 GLTPLSVEEVPLYRALSGEQVRDQPIVIAPERAPRRYVTASGSAIF-----GPGGEKLGA 688

Query: 413 IWMFENLTVQVDLETKYNTLVK 434
           +    ++T Q + E     + +
Sbjct: 689 VVALHDVTAQREAEQAVERVTQ 710



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 5/148 (3%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISY---KKNTETEGIVFQKAIGESRKLFKEEIKKRMI 253
            L D+L    W  D  G I++AN +Y    +  E   +                      
Sbjct: 17  TLLDALPSPTWILDGQGTIIFANKAYQVQLRLPEMPVLRQHFTEFLGAHQQDAGAHAWRH 76

Query: 254 SSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFG-EAGIAIDVSKEITVNDQLTHTYEIL 312
           +         E    LE GN+      +     G +    + ++   T + +       L
Sbjct: 77  AQDTRAPFALELQLPLEQGNDCVLAQAQFSYLTGFDDQWLVTLTPLQTDDVEHHELLTAL 136

Query: 313 HNLTVAI-AIFDQNRYLQFHNRSFVELW 339
             +  AI A  D+    Q    + V L 
Sbjct: 137 DQINEAISAQLDEEGLAQTVTDAAVRLT 164


>gi|196047143|ref|ZP_03114360.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196022013|gb|EDX60703.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 462

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 7/253 (2%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELSSSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKE--- 263

Query: 601 SLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
           + + KQ  +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + + 
Sbjct: 264 TTSPKQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVN 323

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
               E  I +       L     D QR  Q+   IL+NA   S + S + +    ++   
Sbjct: 324 AMYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSHINISVTEEHKRI 382

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG ++++S 
Sbjct: 383 SITIEDEGEGIPSEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSE 442

Query: 778 DEGVTTINCRIPS 790
            +  +     +PS
Sbjct: 443 VDHGSCFIISLPS 455


>gi|167746502|ref|ZP_02418629.1| hypothetical protein ANACAC_01212 [Anaerostipes caccae DSM 14662]
 gi|167653462|gb|EDR97591.1| hypothetical protein ANACAC_01212 [Anaerostipes caccae DSM 14662]
          Length = 635

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 14/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  RAE A     +   KA+  K+ F+  +S+E+R+P+  IIG T  L   +    ++K 
Sbjct: 108 EKNRAEEAF----KHAEKANLAKSEFLSRMSHEIRTPMNGIIGMT--LIAGQNLQNSAKI 161

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S  ++ IS SS  LL L+ND+LD++ +++G +++          +  +      +     
Sbjct: 162 SDCLKKISLSSKHLLALINDVLDMSKIESGKIEIKNEVFDFKVFIESLTTVYYAQAVSKK 221

Query: 667 IRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA--RDNGDFI--- 720
           +    I  G++    + D  RL QI + +LSNA+ F+ +G  V L+    R+  + +   
Sbjct: 222 LNFDTILIGEVREELIGDSLRLNQIITNLLSNAIKFTPEGGNVTLRIQELREEDELVWFR 281

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
           F V++ G  +  +  + +FN F    +    +  G GLGLSI   F +L GG + ++S  
Sbjct: 282 FQVEDTGCGVAPENMEKIFNAFEQETSDVAQKYGGTGLGLSISRRFASLMGGSLILNSEV 341

Query: 779 EGVTTINCRIPSK 791
              +     IP +
Sbjct: 342 GKGSVFTADIPFQ 354


>gi|29141721|ref|NP_805063.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213051566|ref|ZP_03344444.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428552|ref|ZP_03361302.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213647231|ref|ZP_03377284.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854966|ref|ZP_03383206.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|29137349|gb|AAO68912.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 920

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|255013019|ref|ZP_05285145.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. 2_1_7]
          Length = 1359

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 116/272 (42%), Gaps = 14/272 (5%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTN 586
            Y I  +  A  ++ F+      + E            + DE+K  F  +VS+E R+PLT 
Sbjct: 802  YIIAGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTL 861

Query: 587  IIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+   + L+KT K    + +  Q ++ I  ++  LL LVN +LD   +D     L  ST 
Sbjct: 862  IMTPLEKLMKTEK----DMESQQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTG 917

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             +   + +V  S      +  I     S         D  ++ +I S +LSNA  F+ +G
Sbjct: 918  DIVPFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEG 977

Query: 706  STVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLG 757
             T+ +              +  V ++G  IP D   ++F+RF   A   +     G G+G
Sbjct: 978  GTISVTLRLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVASPDKGNPVVGTGIG 1037

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            L +   F+ +H G +++ S     +T    +P
Sbjct: 1038 LHLCREFVRMHHGTITVKSEPGAGSTFTVTLP 1069


>gi|186894112|ref|YP_001871224.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           PB1/+]
 gi|186697138|gb|ACC87767.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
          Length = 924

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|150009686|ref|YP_001304429.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides distasonis ATCC 8503]
 gi|149938110|gb|ABR44807.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Parabacteroides distasonis ATCC 8503]
          Length = 1369

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 116/272 (42%), Gaps = 14/272 (5%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTN 586
            Y I  +  A  ++ F+      + E            + DE+K  F  +VS+E R+PLT 
Sbjct: 812  YIIAGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTL 871

Query: 587  IIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+   + L+KT K    + +  Q ++ I  ++  LL LVN +LD   +D     L  ST 
Sbjct: 872  IMTPLEKLMKTEK----DMESQQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTG 927

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             +   + +V  S      +  I     S         D  ++ +I S +LSNA  F+ +G
Sbjct: 928  DIVPFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEG 987

Query: 706  STVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLG 757
             T+ +              +  V ++G  IP D   ++F+RF   A   +     G G+G
Sbjct: 988  GTISVTLRLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVASPDKGNPVVGTGIG 1047

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            L +   F+ +H G +++ S     +T    +P
Sbjct: 1048 LHLCREFVRMHHGTITVKSEPGAGSTFTVTLP 1079


>gi|315501120|ref|YP_004080007.1| gaf sensor hybrid histidine kinase [Micromonospora sp. L5]
 gi|315407739|gb|ADU05856.1| GAF sensor hybrid histidine kinase [Micromonospora sp. L5]
          Length = 1454

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 18/274 (6%)

Query: 533  LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            L + Q         +   A   L EK + L +A   K+ F+ ++S+ELR+PL +++    
Sbjct: 1009 LLSEQKANIETQNREIELARLGLEEKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLAR 1068

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  +   +L++KQ ++   I  + + LL+L++DILDL+ ++AG M +  + I   ++  
Sbjct: 1069 LLAENPERNLSAKQIEFARTIHGAGSDLLSLIDDILDLSKIEAGRMDVEPTEIQFAEIRG 1128

Query: 653  EVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             V+Q+ A +  E  +  +V +S     + V D QRL QI   +LSNA+ F+  G+ V L+
Sbjct: 1129 YVEQAFAPQAEEKGLDFQVRVSQDLPPALVTDAQRLQQILRNLLSNAVKFTDNGA-VTLR 1187

Query: 712  AARDNGDFI--------------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
                  + +              F+V + G  I +D    +F  F         +  G G
Sbjct: 1188 IGPAAENAVFDVPALTNAQRVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTG 1247

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LGLSI      L GG +++SS+    +T    +P
Sbjct: 1248 LGLSISRDLARLLGGTITVSSAPGQGSTFTLFVP 1281


>gi|257090018|ref|ZP_05584379.1| two component system sensor histidine kinase [Enterococcus faecalis
           CH188]
 gi|256998830|gb|EEU85350.1| two component system sensor histidine kinase [Enterococcus faecalis
           CH188]
          Length = 576

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 215 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 268

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 269 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 315

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 316 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 375

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 376 LIDGAKED-PKVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 433

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 434 ILGSYQQQLVAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 492

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 493 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 552

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 553 IAIDSHLGLGTTFTITLPL 571


>gi|159900990|ref|YP_001547237.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894029|gb|ABX07109.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 581

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 154/368 (41%), Gaps = 16/368 (4%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +     +      +  SEGV +   +G +  +N  F  ++    + +  G  +R      
Sbjct: 206 QIKMSEERFRALAEATSEGVVLQD-EGVVMDANERFGEMFGYHRDEIL-GHSLREFVEPQ 263

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
           S         D     +T+    RK     + L+  + L YS         +    ++T+
Sbjct: 264 SLQRAMQKYKDGAPYEVTAL---RKDGSTFIALVLGTNLPYS----NRVVRVAAVRDITE 316

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
               E  L    +    A+  K++F+  VS+ELR+PL  I+G+++++    +     + +
Sbjct: 317 QRHFENLLLTAKDDAEAANRAKSTFLSTVSHELRTPLNAIVGYSEMIYEDLIDRSMPELA 376

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I ++S  LL+L++ +L +  +DA +++L Y TI L   +  +   +  K  +N  
Sbjct: 377 MDMTRIRSASDRLLSLIDGVLTITDLDAEVVRLEYETIDLALAIGSISDQLQAKAQDNKN 436

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSV 723
            ++++     GS ++D  +L  I   +L NA+ F+  G  + +   R      G    ++
Sbjct: 437 TVQLLGSQNWGSIISDDHKLRMIIYHLLDNAIKFTHAG-LISISVQRLQHAAGGWLEIAI 495

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  I  +  + +F  FV        Q  G GLGL++        GG + + S     
Sbjct: 496 RDTGIGIAHEQFERIFEPFVQADSSATRQYEGTGLGLAVSMRLARALGGTIELDSRLGIG 555

Query: 782 TTINCRIP 789
           +T    +P
Sbjct: 556 STFTLHMP 563


>gi|329957721|ref|ZP_08298196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522598|gb|EGF49707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1348

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 126/270 (46%), Gaps = 6/270 (2%)

Query: 524  SVLEYSIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRS 582
            +VL ++   +     +  +  +  S++AE +      E  ++ +E+K  F  ++S+ELR+
Sbjct: 784  AVLMFTAAFIAVTIFIFRYFWMRKSMQAELQMERVDKERQKEVNEMKLRFFINISHELRT 843

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PLT I+     +          KQ ++V+    ++  LL+LVN ++D    + G+  L  
Sbjct: 844  PLTLILAPVQEMMDKVSDRWLHKQLEHVQ---KNTNRLLHLVNQLMDYRRAELGVFNLKV 900

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                ++ ++ +             I   + S+ +    + D   L  I + +LSNA  ++
Sbjct: 901  RRNPIHKVIEKDFLFYDRLAQRKRIAYNLSSEVEGKEILCDPNYLELIVNNLLSNAFKYT 960

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
             +G ++ +       + +  V++ G+ IP D    +F RF    +  +  G G+GLS+V+
Sbjct: 961  DEGKSITVVLRETGKELLLQVRDTGNGIPIDKQAKIFERFYQADN--EHMGSGIGLSLVQ 1018

Query: 763  SFINLHGGHVSISSSDEGVTTINCRIPSKE 792
              ++LH G + + S +   +  +  +P++E
Sbjct: 1019 RLVDLHHGRIELESREGEGSAFSIYLPTEE 1048


>gi|228907708|ref|ZP_04071564.1| hypothetical protein bthur0013_18740 [Bacillus thuringiensis IBL
           200]
 gi|228851941|gb|EEM96739.1| hypothetical protein bthur0013_18740 [Bacillus thuringiensis IBL
           200]
          Length = 351

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 120/242 (49%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 228

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+I++           ++++G  I E
Sbjct: 229 -DLEKVHVIADQESMSQVWINLIHNSIKFTPSGGTIIIQLKEHETVVEVRIRDSGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    R+P+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|229042512|ref|ZP_04190257.1| hypothetical protein bcere0027_5780 [Bacillus cereus AH676]
 gi|229108260|ref|ZP_04237881.1| hypothetical protein bcere0018_5490 [Bacillus cereus Rock1-15]
 gi|229148988|ref|ZP_04277233.1| hypothetical protein bcere0011_5570 [Bacillus cereus m1550]
 gi|228634528|gb|EEK91112.1| hypothetical protein bcere0011_5570 [Bacillus cereus m1550]
 gi|228675173|gb|EEL30396.1| hypothetical protein bcere0018_5490 [Bacillus cereus Rock1-15]
 gi|228726865|gb|EEL78077.1| hypothetical protein bcere0027_5780 [Bacillus cereus AH676]
          Length = 463

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + + ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TPSEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYIKVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSHINISVTEEHKHIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 IAIEDEGEGIPLEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|255305464|ref|ZP_05349636.1| two-component hybrid sensor kinase/response regulator [Clostridium
           difficile ATCC 43255]
          Length = 801

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 110/244 (45%), Gaps = 12/244 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  E   +A++ K+ F+ ++S+++R+P+  I+G T + K         +    +  
Sbjct: 278 QELDKNREMALEANKAKSEFLANMSHDIRTPMNAIVGMTAIAKAHIDDQ--EQVKNCLRK 335

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS  LL L+ND+LD++ +++G + L    I L +++  +   I  ++        + 
Sbjct: 336 ITLSSKHLLGLINDVLDMSKIESGKLALTMEQISLREIIEGIVSIIQPQVKVKKQNFDIH 395

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVK 724
            +  L      D  RL Q+   +LSNA  ++ +G ++ L    +              VK
Sbjct: 396 INNILTENVWCDGVRLNQVLLNLLSNATKYTPEGGSIQLDLFEEKSPKGEDFVRVHIKVK 455

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  +     K ++  +         +  G GLG++I +  ++   G +++ S  +  T
Sbjct: 456 DNGIGMSPTFLKKIYESYSRADGTRIHKTEGAGLGMAITKYIVDAMEGTINVQSELDKGT 515

Query: 783 TINC 786
             + 
Sbjct: 516 EFHI 519


>gi|146299730|ref|YP_001194321.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
           johnsoniae UW101]
 gi|146154148|gb|ABQ05002.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
           johnsoniae UW101]
          Length = 555

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 166/396 (41%), Gaps = 25/396 (6%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLET-------KYNTLVKVQGETIDHLSEGVAVFGPD 453
            V  TS+   G +    N T+   LE        K     K     I+++++ +     +
Sbjct: 175 RVHFTSHSEFGDLAKSFN-TMAQKLEEYHDSNVYKLLFEKKRLETLINNMNDPIIGLDNE 233

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII-TSFDDERK 512
           G +   N     +   +   +  G     +A +           DL  ++I    +  +K
Sbjct: 234 GIVLFVNDEALKIIGLKSEDI-IGKPASELAVS----------NDLIRSLILKESETPKK 282

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
                     +S  E  I  +    T          V   R +T   E     D  K +F
Sbjct: 283 QPLKIFAHGKESYFEKEIHNITITPTGEEKEINIGDVIILRNITLFKEL----DFAKTNF 338

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  VS+EL++P+ +I     LL+  K G +N  Q Q VE I   S  LL +  ++L+L+ 
Sbjct: 339 IATVSHELKTPIASIKLSLQLLENGKTGDMNDDQKQLVESIKDDSQRLLKITGELLNLSQ 398

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++ G ++LN      ++++    +++  +  +  I++ V ++  L +  AD ++   +  
Sbjct: 399 LETGNIQLNIGKSNPHEIVKYAVEAVKVQADQKQIQLIVDANENLKNVKADAEKTGWVLI 458

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
             LSNA+ +SS+ ST+++K   +N   +F V + G  I       VF+++       Q+ 
Sbjct: 459 NYLSNAIRYSSEKSTILIKLKEENDQMVFQVIDTGKGIDTRYKDKVFDKYFQVPGS-QKS 517

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+I + FI    G+V + S+    +T    +
Sbjct: 518 GTGLGLAISKEFIEAQNGNVGVESNLGLGSTFWFSL 553


>gi|332088166|gb|EGI93288.1| sensor protein evgS [Shigella boydii 5216-82]
          Length = 1127

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 170/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 448 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 507

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 508 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 566

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    NA  +  + ++T++     
Sbjct: 567 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIN 626

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +     KA   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 627 ALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 684

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 685 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 744

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIF--SVKNNGS 728
                     D Q   Q+ S +LSN + F+++G+  I       D+   +   ++ ++GS
Sbjct: 745 TFPDHYLVKIDPQAFKQVLSNLLSNGLKFTTEGAVKITTSMVHIDDNHAVIKMTIMDSGS 804

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 805 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 864

Query: 789 PSK 791
           P +
Sbjct: 865 PVE 867


>gi|170692375|ref|ZP_02883538.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170142805|gb|EDT10970.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 657

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 172/481 (35%), Gaps = 48/481 (9%)

Query: 336 VELWEIDLAFLATNPSNDELLEFLRSAN-KLP---------EQLNWKTWKENIFSVYKSS 385
           ++L  +D          D     LRS   ++P         E    +  +  +  V   S
Sbjct: 55  LDLLVLDYQLSGPETGLD-FFRRLRSEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKS 113

Query: 386 ETHKDTWHLPNGQTL-HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLS 444
             + D       + L  V +        +          D E  Y  L        + L 
Sbjct: 114 GDYLDYLPEAVERVLSQVRLQRASDEALLL--------RDREQHYRDLS-------EALP 158

Query: 445 EGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
             V      G     +  +       EN  S G    +      R           A   
Sbjct: 159 HLVLTCNAAGDCDFLSKQWYDYTGLTENS-SHGLAWLDAVHPDDREEVRRSWLKAVAGNA 217

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVN------------VTDSVRAE 552
            ++  E +  +   E       +  I+   + +  ++               + +  R  
Sbjct: 218 GTYRHELRIRRHDGEY---RWFDTRIVATRDNEGNISKWFGSCTDIHSEREAMQERERLL 274

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +     +   +A+  K+ F+  +S+ELR+PLT ++    +L+   +  L  +    V  
Sbjct: 275 ASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEM--IPDLPDQARSSVRM 332

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  +  +   L++D+LDL  V  G ++L+  T+ ++++++ V +   +++      + V 
Sbjct: 333 IRRNIELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQVKQQDVHVH 392

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D      +ADR RL Q+   ++ NA  F+  G  + ++   +      SV++ G  I  
Sbjct: 393 KDATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTRDERMHVQISVEDTGIGIEP 452

Query: 733 DMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
           +    +FN F         Q  G+GLGL+I ++  ++HGG V+  S       T    +P
Sbjct: 453 EQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGTVTAQSPGPHCGATFTITLP 512

Query: 790 S 790
           +
Sbjct: 513 T 513


>gi|146421491|ref|XP_001486691.1| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 665

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 13/239 (5%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            EA   A+  K+ F+ ++S+E+R+PL  IIG T L   ++   L   Q + +  +   + 
Sbjct: 26  REAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLSLDTE---LTQYQREMLSIVHNLAN 82

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG 678
            LL +++DILD++ ++A  M +      L   +    +++A K  E ++ +    D    
Sbjct: 83  SLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALKTLAVKAIEKSLDLTYQCDSSFP 142

Query: 679 -SFVADRQRLLQIFSKILSNAMDFSSKG-----STVILKAARDNGDFIFS--VKNNGSSI 730
            + + D  RL Q+   +  NA+ F+ +G          K   D+   +    V + G  I
Sbjct: 143 DNLIGDSFRLRQVILNLAGNAIKFTKQGKVSVSVKKSSKVVEDSDKLLLEVCVSDTGIGI 202

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            +D    +F+ F        R   G GLGLSI +  I L GG + ++S     +     
Sbjct: 203 EKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLILLMGGEIWVTSDYGSGSNFYFT 261


>gi|291523429|emb|CBK81722.1| amino acid-binding domain sensor hybrid histidine kinase
           [Coprococcus catus GD/7]
          Length = 953

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 125/256 (48%), Gaps = 11/256 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +    ++ L       + A++ K SF+ ++S+++R+P+  I+G   +L+ S  G+   
Sbjct: 554 NQELEEKQQELQNALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKS--GNDGE 611

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +    +  I+ SS +LL+LVND+LD+A +++  +  +  +I L+ +  E+ +S++ +  E
Sbjct: 612 RAKDCLNKINESSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLSFQAEE 671

Query: 665 NNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGD 718
             + +    D        ++   L ++   + +N+M ++    ++      ++ + D+  
Sbjct: 672 KGLHVIGEHDDYSGIYVWSNAVHLKKVLMNLFTNSMKYNKVNGSIYMSMRTIERSEDHMT 731

Query: 719 FIFSVKNNGSSIPEDMCKS-VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
             F +++NG  + E+  K+ +F  FV   +       G GLG+ IV+  +   GG +++ 
Sbjct: 732 CEFKIRDNGIGMSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVE 791

Query: 776 SSDEGVTTINCRIPSK 791
           S     +     +P K
Sbjct: 792 SKLGEGSCFTVILPFK 807


>gi|261246598|emb|CBG24408.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 920

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|257094360|ref|YP_003168001.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046884|gb|ACV36072.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 797

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 22/252 (8%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    E    A+  K+ F+ ++S+E+R+P+  +IG  DLL  +    L+ +Q ++ E +
Sbjct: 255 QLQLAKEQAETANLAKSRFLANMSHEIRTPMNGVIGMADLLLDT---GLSEQQRRHAETL 311

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVI 672
             S+  LL+L+N+ILDL+ +++G + +  +      L+ EV Q          + +  VI
Sbjct: 312 RLSAESLLHLLNNILDLSKIESGRLDIELTPFDPRRLVEEVMQPFVEMASAKGVLLGDVI 371

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD---------------NG 717
           S       + D  R+ QI S +LSNA+ F+  GS + +  +++               + 
Sbjct: 372 SPDIPPVVIGDPYRVKQILSNLLSNAVKFTEHGS-IFISLSQEPTGADRDSAPAADGTHC 430

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS 775
              ++V + G  I     + +F  F        R   G GLGL I+        GHV   
Sbjct: 431 QLCYAVTDTGVGISRAASEKLFAPFTQADDSTTRKFGGTGLGLVIIRELAQRMDGHVGFE 490

Query: 776 SSDEGVTTINCR 787
           S++   +T   R
Sbjct: 491 SAEGLGSTFWFR 502


>gi|255014099|ref|ZP_05286225.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 791

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 143/351 (40%), Gaps = 26/351 (7%)

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           +A +  DG +   N  +  +       ++    I +I     ++      + ++  +I +
Sbjct: 178 IASYDYDGVVASYNRQY--MAPELHEEMTEKLQIAHIEPILRKHGE----YIVYGTMIEN 231

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
             +  K ++ +      ++   +   +           + +  + ++ L E  ++   A+
Sbjct: 232 GVNREKKMRFSYYDREKNIWLMTRTDI---------TEIKEERKQKKLLQEALQSANAAN 282

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F+  +S+++R+P+  I+G T +           + +  ++ I+ SS +LLNL+N+
Sbjct: 283 RAKTDFLSRMSHDIRTPINAIVGMTAI--AGLHMDDQMRIADCLKKITISSKLLLNLINE 340

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KLGSFVADRQ 685
           +LD++ +++  + L      +N+LL  +   +         + ++     K    + D Q
Sbjct: 341 VLDMSKLESDKIMLTEEAFKINELLESLFVMVQPAFEAKKQKFQIHVTKIKHECLIGDVQ 400

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFIFSVKNNGSSIPEDMCKSVF 739
           R+ Q    +L+NA+ ++ +   + L            G F  +V +NG  +  +  + VF
Sbjct: 401 RIQQALLNMLTNAIKYTPEDGQIQLTVEEKPSVYNGYGQFEITVTDNGIGMKPEFLEKVF 460

Query: 740 NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F  +  +     +G GLG++I      +  G + + S     +    R 
Sbjct: 461 EPFERSDDKAIRNIQGTGLGMAISRHIAQIMNGDILVESEYGKGSKFTMRF 511


>gi|238913203|ref|ZP_04657040.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 920

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++  +       F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHAPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|225027309|ref|ZP_03716501.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353]
 gi|224955371|gb|EEG36580.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353]
          Length = 955

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 125/256 (48%), Gaps = 11/256 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +    ++ L       + A++ K SF+ ++S+++R+P+  I+G   +L+ S  G+   
Sbjct: 554 NQELEEKQQELQNALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKS--GNDGE 611

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +    +  I+ SS +LL+LVND+LD+A +++  +  +  +I L+ +  E+ +S++ +  E
Sbjct: 612 RAKDCLNKINESSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLSFQAEE 671

Query: 665 NNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGD 718
             + +    D        ++   L ++   + +N+M ++    ++      ++ + D+  
Sbjct: 672 KGLHVIGEHDDYSGIYVWSNAVHLKKVLMNLFTNSMKYNKVNGSIYMSMRTIERSEDHMT 731

Query: 719 FIFSVKNNGSSIPEDMCKS-VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
             F +++NG  + E+  K+ +F  FV   +       G GLG+ IV+  +   GG +++ 
Sbjct: 732 CEFKIRDNGIGMSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVE 791

Query: 776 SSDEGVTTINCRIPSK 791
           S     +     +P K
Sbjct: 792 SKLGEGSCFTVILPFK 807


>gi|212527502|ref|XP_002143908.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
 gi|210073306|gb|EEA27393.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
          Length = 1768

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 15/266 (5%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             A    T  ++ D    ER L +  + L +  E K  F  ++S+E+R+PL  I+G    +
Sbjct: 1171 EASWYGTCTDINDRKLLERELNKAMQKLNREMESKTKFFSNMSHEIRTPLNGILGTIPFI 1230

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   +L+++Q + ++ I  SST L  LV++ILD++ V+AG M +  S   L  +L +V
Sbjct: 1231 LDT---ALDNEQRRMMDTIQNSSTNLRELVDNILDVSRVEAGKMNMVKSWFHLRSVLEDV 1287

Query: 655  KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++A++  +  I I  + D  +    + DR R+ Q+   ++ NA+ F+  G      + 
Sbjct: 1288 IDTVASRAIDKGIEINYLMDTDVPDMIIGDRFRIRQVLINLMGNAVKFTGHGEIYTRCSV 1347

Query: 714  RDNGDF---------IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
              + +           F V + G    +   + +  RF         Q  G GLGL + +
Sbjct: 1348 YHDPEVPLKDTELLLNFEVVDTGKGFSDTDAERLMQRFSQLGGNGSQQNAGSGLGLFLSK 1407

Query: 763  SFINLHGGHVSISSSDEGVTTINCRI 788
              + +HGG ++ SS +      +  I
Sbjct: 1408 QLVEMHGGKLTPSSREGQGAKFSFYI 1433


>gi|212527500|ref|XP_002143907.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
 gi|210073305|gb|EEA27392.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
          Length = 1888

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 15/266 (5%)

Query: 535  NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             A    T  ++ D    ER L +  + L +  E K  F  ++S+E+R+PL  I+G    +
Sbjct: 1171 EASWYGTCTDINDRKLLERELNKAMQKLNREMESKTKFFSNMSHEIRTPLNGILGTIPFI 1230

Query: 595  KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
              +   +L+++Q + ++ I  SST L  LV++ILD++ V+AG M +  S   L  +L +V
Sbjct: 1231 LDT---ALDNEQRRMMDTIQNSSTNLRELVDNILDVSRVEAGKMNMVKSWFHLRSVLEDV 1287

Query: 655  KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
              ++A++  +  I I  + D  +    + DR R+ Q+   ++ NA+ F+  G      + 
Sbjct: 1288 IDTVASRAIDKGIEINYLMDTDVPDMIIGDRFRIRQVLINLMGNAVKFTGHGEIYTRCSV 1347

Query: 714  RDNGDF---------IFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVE 762
              + +           F V + G    +   + +  RF         Q  G GLGL + +
Sbjct: 1348 YHDPEVPLKDTELLLNFEVVDTGKGFSDTDAERLMQRFSQLGGNGSQQNAGSGLGLFLSK 1407

Query: 763  SFINLHGGHVSISSSDEGVTTINCRI 788
              + +HGG ++ SS +      +  I
Sbjct: 1408 QLVEMHGGKLTPSSREGQGAKFSFYI 1433


>gi|256838638|ref|ZP_05544148.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
 gi|256739557|gb|EEU52881.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
          Length = 1364

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 14/272 (5%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTN 586
            Y I  +  A  ++ F+      + E            + DE+K  F  +VS+E R+PLT 
Sbjct: 807  YIIAGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTL 866

Query: 587  IIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+   + L+KT K    + +  Q ++ I  ++  LL LVN +LD   +D     L  ST 
Sbjct: 867  IMTPLEKLMKTEK----DMESQQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTG 922

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             +   + +V  S      +  I     S         D  ++ +I S +LSNA  F+ +G
Sbjct: 923  DIVPFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEG 982

Query: 706  STVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLG 757
             T+ +  +           +  V ++G  IP D   ++F+RF   +   +     G G+G
Sbjct: 983  GTISVTLSLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVSSPDKGNPVVGTGIG 1042

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            L +   F+ +H G +++ S     +T    +P
Sbjct: 1043 LHLCREFVRMHHGTITVKSEPGAGSTFTVTLP 1074


>gi|320086127|emb|CBY95901.1| two-component sensor/regulator [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 920

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 9/257 (3%)

Query: 539 MLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL+T
Sbjct: 364 LQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT 423

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++  Q
Sbjct: 424 T---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ 480

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   R 
Sbjct: 481 TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRH 539

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               IF V ++G  I       +F  F         +G G+GL+I  S   + GG++++ 
Sbjct: 540 EEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLTLK 597

Query: 776 SSDEGVTTINCRIPSKE 792
           S     T ++  +P +E
Sbjct: 598 SVPGVGTCVSLVLPLQE 614


>gi|300118890|ref|ZP_07056603.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298723735|gb|EFI64464.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 484

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 519 ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSY 578
           E + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S+
Sbjct: 208 EKIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISH 264

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           +L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   +
Sbjct: 265 DLKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRV 323

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNA 698
              + T+ LN  + E+ + +   + +  I + +          AD +++ ++ S ++ N+
Sbjct: 324 PFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNS 383

Query: 699 MDFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVG 755
           + +  K    + +  + DN   I  + +NGS I  D    +F RF            G G
Sbjct: 384 VKYMDKEEKKITVTVSSDNNKVIVKIMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSG 443

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           LGL+I +  I  HGG++   S     T I   +
Sbjct: 444 LGLAIAKQIIEEHGGNIWAESELGEGTNIFFSL 476


>gi|251770948|gb|EES51533.1| periplasmic sensor signal transduction histidine kinase
           [Leptospirillum ferrodiazotrophum]
          Length = 496

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 3/252 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
            N  +     RAL +    L +    K+ FV   S+ELR+PLT+I GF  +LK   LG L
Sbjct: 238 PNRDEMGDLARALNDMAHQLGELSRKKSEFVTIASHELRTPLTSIRGFIAMLKRQTLGPL 297

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
           N +Q + +  ++     L+ LVN +LDL  ++AG M+     + L   L+ + +      
Sbjct: 298 NEEQQKSLSVVAEEIDHLVTLVNQLLDLGRIEAGQMRPEIRELELVPFLDRIGERYRLTA 357

Query: 663 HENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIF 721
             +    ++  D ++ +F+  D  RL QI   +L NA  F+ +G  V L   RD     F
Sbjct: 358 QSSGRIFRMEVDPEIPAFIQTDAHRLAQILDNLLGNAFKFTQEGEEVSLVVKRDFTRIHF 417

Query: 722 SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
            + + G  +P +    +F++F   A      + G+GLGL++ +  +   GG + I  +  
Sbjct: 418 EISDTGIGVPPENIPFLFDKFYQVAPFDSRTKEGLGLGLAVTKGIVLALGGSIEIRQNIP 477

Query: 780 GVTTINCRIPSK 791
             T     +P +
Sbjct: 478 KGTCARVTLPIE 489


>gi|168043247|ref|XP_001774097.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162674643|gb|EDQ61149.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 975

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 161/413 (38%), Gaps = 49/413 (11%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-----RSLWKTEENRLSPGT 478
           ++ T+ +        ++      +     D R +    AF       +    +  +  G+
Sbjct: 219 EIRTQLHRFDNFLRFSLRKAPVVIGHQDSDLRYRFIYNAFPTLSEEEVIGKTDIEIYSGS 278

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---------VLEYS 529
            +  +         +        +  T    E+  L     +LS S          ++ S
Sbjct: 279 GVAELMDFKREVMRKGWPEKREISFNTDLFGEKTFLIAVEPVLSRSGEAMGLNYIAMDIS 338

Query: 530 IIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
                  +       V      E  L +      +A   K   +  +S+E+RSPL+ ++ 
Sbjct: 339 EQVDKRERISRLREEVAVQKAMEAELHKTIHITEEAMRAK-QMLATMSHEIRSPLSGVVS 397

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             ++L T++   L+ +Q Q V+ + +S  ++L L+NDILDL+ V +G MK         +
Sbjct: 398 IAEVLATTQ---LDQEQRQLVDVMVSSGDLVLQLINDILDLSKVQSGAMKFEAKKFRPRE 454

Query: 650 LLNEVKQSIATKMHENNIRIK-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           ++  V Q     M   ++ ++ +I D      + D  R+ Q+ + ++ NA+ F+ +GS  
Sbjct: 455 VVKHVLQMALANMQSKDLILEGLIYDDVPLEVIGDVLRIRQVLTNLVGNAIKFTHEGSVT 514

Query: 709 IL----------------------------KAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           I                             +   D    +  V ++G  IPE    ++F 
Sbjct: 515 ISVRVVPPPPPSVERAAKNSIAECGELAVGEGVEDAVWLLCEVSDSGIGIPESALPTLFE 574

Query: 741 RFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++     AH  +  G GLGL+I ++ + L GG++++ S +   +T +  +P +
Sbjct: 575 KYTQVSTAHARKYGGTGLGLAICKNLVELMGGNLTVLSKENHGSTFSFALPFR 627


>gi|94497939|ref|ZP_01304504.1| signal transduction histidine kinase [Sphingomonas sp. SKA58]
 gi|94422667|gb|EAT07703.1| signal transduction histidine kinase [Sphingomonas sp. SKA58]
          Length = 741

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 104/515 (20%), Positives = 195/515 (37%), Gaps = 42/515 (8%)

Query: 307 HTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLP 366
              + + ++     +FD +  L   N +++  W      L      DE+   L +A++ P
Sbjct: 95  RLRDAIDSINEGFVLFDADDRLLLFNEAYLGFWPDIADQLREGMRFDEI-ARLAAAHQTP 153

Query: 367 EQ--LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV- 423
            +  +    W     + + S         L +G+ + V       GG + ++ ++T    
Sbjct: 154 REALIAPDRWVSERLARH-SVTQGGHVQALADGRWVQVNELRTSEGGIVGIYTDITEAKA 212

Query: 424 -DLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
            D   +   L +   +   T+D+LSEGV +F  D  +   N A + L +  E+      +
Sbjct: 213 EDARERTRELAERNIILQATLDNLSEGVCLFDADRNVAAWNEALQRLLRLPEDWAQDMGN 272

Query: 480 IRNIAATCS--RYYNESDGWDLFAAIITSFDDERK-----SLQGTLELLSDSVLEYS-II 531
              +   C   R+  +    D    I       R       L+ T+      V+ ++ + 
Sbjct: 273 HAQLVHWCRTERHLADEGCLDWRDGIGRKVGQVRAGDRCFELRSTMLEGGGQVIGFTDVT 332

Query: 532 PLPNAQ-----------------TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            +  AQ                 T      V +  + E  L +   A  KA+  K  F+ 
Sbjct: 333 DMLRAQASLKETAETLERRVTERTCELEAEVAERRQIEAELMDAKIAAEKANLSKTRFLA 392

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             S++L  PL     F   L   +L                S   LL     +L+++ +D
Sbjct: 393 AASHDLLQPLNAARLFVAALGDRRLALPTRALVSQTSTALDSVEDLL---EALLEISRLD 449

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           AG ++  +S   L+ LL+ ++   A       + + +  +G+     +D + L +I    
Sbjct: 450 AGAIQAEFSNFPLDRLLDTLRVEFAPMARSAGLSLSI--EGEQVWVRSDIRLLRRILQNF 507

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
           LSNA+ ++ KG+ V L     +     SV + G  IP D  + +F  F    +R    G 
Sbjct: 508 LSNAVRYTQKGA-VRLHCHMFDALVEISVTDTGPGIPPDQQQLIFEEFRRFDNRQS--GK 564

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGL+IV    ++    V++ S     +T +  +P
Sbjct: 565 GLGLAIVRRASDMLRHPVTLRSVAGAGSTFSIMVP 599



 Score = 74.6 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 88/266 (33%), Gaps = 33/266 (12%)

Query: 195 FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA--IGESRKLFK--EEIKK 250
            +   DS++      D    +L  N +Y           ++     E  +L    +  ++
Sbjct: 96  LRDAIDSINEGFVLFDADDRLLLFNEAYLGFWPDIADQLREGMRFDEIARLAAAHQTPRE 155

Query: 251 RMISSSALEKNFCETVSTLEHG------NNKSYKIVRV-LNSFGEAGIAIDVSK--EITV 301
            +I+            S  + G      + +  ++  +  +  G  GI  D+++      
Sbjct: 156 ALIAPDRWVSERLARHSVTQGGHVQALADGRWVQVNELRTSEGGIVGIYTDITEAKAEDA 215

Query: 302 NDQLTHTYE-------ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDE 354
            ++     E        L NL+  + +FD +R +   N +   L  +   +     ++ +
Sbjct: 216 RERTRELAERNIILQATLDNLSEGVCLFDADRNVAAWNEALQRLLRLPEDWAQDMGNHAQ 275

Query: 355 LLEFLRSANKLPEQ--LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           L+ + R+   L ++  L+W+          ++ +           +   +  T    GG 
Sbjct: 276 LVHWCRTERHLADEGCLDWRDGIGRKVGQVRAGD-----------RCFELRSTMLEGGGQ 324

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE 438
           +  F ++T  +  +       +    
Sbjct: 325 VIGFTDVTDMLRAQASLKETAETLER 350


>gi|110633234|ref|YP_673442.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110284218|gb|ABG62277.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 548

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 4/227 (1%)

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSKQSQYVEYISASSTILLNLVN 625
             ++  +  VS+ELR+PL  I+GF DLL     G   N KQ +YVE I  + T LL++VN
Sbjct: 289 RSRDEMLASVSHELRTPLNAIVGFADLLANEMFGKFANDKQREYVEVIREAGTHLLSVVN 348

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            ILD++ V +G   +        D +         +    ++ +K    G +G+   D+ 
Sbjct: 349 AILDVSKVQSGAYGVEAKPFHFEDAVRLCMAMTTHQAQAKSVELKADIAGDIGTVRCDKN 408

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--V 743
            + Q+   +LSNA+ F+  G  V + A R      F+V + G  I  +  + V   F  V
Sbjct: 409 AVQQVLINLLSNAVKFTPSGE-VKVTAHRSGDRLEFTVSDTGIGISAEDLELVGTPFMQV 467

Query: 744 SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            N +  +  G GLGL++V+  + L GG +SI S+    T ++  +P+
Sbjct: 468 RNDYTRKCEGTGLGLALVKGLVRLQGGGLSIESAPGRGTRVHVSLPA 514


>gi|91777004|ref|YP_546760.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
 gi|91710991|gb|ABE50919.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus
           KT]
          Length = 713

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           + E  +    A+  K  FV ++S+E+R+PL  IIG + LL+ ++   LN +Q + +  + 
Sbjct: 184 IEEARQKAEVANHAKTRFVANMSHEIRTPLNGIIGISTLLRNTQ---LNPEQDELLRTLE 240

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           +SS +LL  +N++LD + ++   M++  + + L DL  +  +    +     IR++    
Sbjct: 241 SSSKLLLAQLNNVLDFSKIEQEKMQVEKTELSLRDLAEQTIEVFKGQALHKRIRLEKDIR 300

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKNNGSSI 730
                  +D   L QI + ++ NA+ F+ +G+  +    L+   D+G +   V + G  I
Sbjct: 301 IDDVRVKSDPYILQQILANLVGNAVKFTEQGAVTLSVHALETTADHGVYRIEVVDTGIGI 360

Query: 731 PEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            ++  + +F  F        R   G GLGL+I +  +   G  + +SSS    +     +
Sbjct: 361 SDEHRERIFESFTQADISTTRKFGGSGLGLTIAKRLVEALGSELHLSSSLNAGSRFWFDL 420


>gi|219848679|ref|YP_002463112.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542938|gb|ACL24676.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 710

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 174/461 (37%), Gaps = 48/461 (10%)

Query: 340 EIDLAFLATNP-----SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
            ID   +   P     +  E    L      P+  N      +I S  + + +  +  HL
Sbjct: 278 SIDAHEIGQRPEWATLATHEFRSALSVPLFDPDHPNCVRGALSIVSRQEGAFSPSEERHL 337

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
            +     +I   N                +L  + +    +    ++ +++G+ V+   G
Sbjct: 338 ISFSIQAMIAIRN---------------AELHVQLSKQRAMLSAILNDMADGLIVYDDHG 382

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           ++ L N   R + +                A       ES   ++    +         +
Sbjct: 383 KVYLDNAVARRVLQYSAEHQGVLHTRLAAFAARLFQRGESLSEEVEVKDVDGAQARYYRI 442

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           QGTL           + P P     +  ++     +               ++ +  F+ 
Sbjct: 443 QGTL-----------VNPSPETCLAVVVLHDITDQKLR-------------EQQRRDFMA 478

Query: 575 HVSYELRSPLTNIIGFTDLL--KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
            VS+ELR+PL  + GF  LL  +++K+G+LN +Q++ ++ +  S   L   + D+++L  
Sbjct: 479 KVSHELRNPLHTLQGFLKLLINESNKVGNLNERQTEALQEVENSVNTLKKRIVDLIELNR 538

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFS 692
           ++ G   +N       D++        +K  E+ + + +    +L   + D  R+ Q+ +
Sbjct: 539 LERGQFTINPVRTNPIDIIVTTCSQQRSKALESEVELIIDIPDQLPQVIVDEDRIRQVLT 598

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV-SNAHRGQR 751
            ++ NAM  + +G  +++ A +     +  V + G  I  ++ + +F+ F          
Sbjct: 599 NLIENAMKATPRGGKIVVSAEQQQDQILIHVTDTGKGIASELWEKIFDPFYSRGNGMLAG 658

Query: 752 RGVGLGLSIVESFINLHGGHVSI-SSSDEGVTTINCRIPSK 791
             +G+GL+I    +  HGG + +  S     T  +  +P +
Sbjct: 659 ENMGVGLTICRQLVEAHGGKIWVAHSEVGKGTRFSFSLPLE 699


>gi|325838906|ref|ZP_08166712.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|325490647|gb|EGC92958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 623

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 146/342 (42%), Gaps = 19/342 (5%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS----FDDERKSLQG-- 516
           F S  + +E  L     +   +            + LF  II       D  R+  +G  
Sbjct: 278 FYSTAELQEMVLRQTISLFEFSTILLIILFLFVSYLLFIVIIRPCYLLVDYVRRCGEGDY 337

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           T+    +S   +S + + NA      +      ++ + L    +    A++ K  F+  V
Sbjct: 338 TIPPGINSSWRFSFVRIRNAYLENERLLAVKDNQS-QELEYAWKKALVANQAKTHFLAKV 396

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+EL++PL  I G+  LLK   L   N KQ + +E I  SS +LL  V+++LD + ++ G
Sbjct: 397 SHELKTPLNAIKGYIQLLK---LSIDNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIEDG 453

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKIL 695
            +KL   TI L    + +++       + ++   V  D ++ S    D  R+ QI   ++
Sbjct: 454 KVKLEIDTIDLFQTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIINLM 513

Query: 696 SNAMDFSSKGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHR 748
           SNA+ F+  G  + +                 VK+ G  I E+   S+F+ F    N+  
Sbjct: 514 SNALKFTEHG-KIEVSFDLDYQTETEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSIS 572

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            Q  G GLGLSI +    + GG++ + S     +T    +P 
Sbjct: 573 RQFGGTGLGLSISKRLAEVMGGNLIVESQVNVGSTFTLFLPL 614


>gi|229178390|ref|ZP_04305759.1| hypothetical protein bcere0005_17520 [Bacillus cereus 172560W]
 gi|229190088|ref|ZP_04317094.1| hypothetical protein bcere0002_17600 [Bacillus cereus ATCC 10876]
 gi|228593417|gb|EEK51230.1| hypothetical protein bcere0002_17600 [Bacillus cereus ATCC 10876]
 gi|228605120|gb|EEK62572.1| hypothetical protein bcere0005_17520 [Bacillus cereus 172560W]
          Length = 351

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 228

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+ ++           ++++G  I E
Sbjct: 229 -DLEKVHVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    R+P+
Sbjct: 288 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMPN 347

Query: 791 KE 792
            E
Sbjct: 348 HE 349


>gi|224584097|ref|YP_002637895.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468624|gb|ACN46454.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 920

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQEQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|222152736|ref|YP_002561913.1| alkaline phosphatase synthesis sensor protein [Streptococcus uberis
           0140J]
 gi|222113549|emb|CAR41350.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus uberis 0140J]
          Length = 441

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 32/374 (8%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                + +   L         HL+ G+ +      I+L +   +SL     +   P   I
Sbjct: 92  ELAKRKEESQKLSSNLEALTSHLTMGMFLVSETKDIQLYS---KSLPHYFPDADKPFQKI 148

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEYSIIPLPNAQT 538
            +I  T           D+ A +  +F   +K+++  L+   D   +LE + +P+ N   
Sbjct: 149 EDIGRT-----------DVKAVVAQAFIT-KKTIKKELKGYHDGDLILEVTAVPIFNQYG 196

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
            +  V V         L      +R  +++   F+ + S+ELR+P+T+I GF + +K   
Sbjct: 197 TVFQVLV---------LLYDLTTIRDYEKLNMDFISNASHELRTPVTSIKGFAETIKNMP 247

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 K  ++++ I   S  L ++V  +L L+ V     +L  + I LND L  +  S+
Sbjct: 248 EEEQTLK-DEFLDIIYNESLRLEHIVEHMLTLSKV--NKTQLQKTEIALNDFLYYIGNSM 304

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
             ++HE ++++       + +  +D+  L QI   ++SNA+ ++ +G  + +  A   G 
Sbjct: 305 KHQLHEKHLQLSFDLAEDV-TIKSDKYLLSQILLNLMSNAIRYTDEGGKITISTAFKEGK 363

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +V + G  I +     +F RF         Q  G GLGLSIV+    + GG V + S
Sbjct: 364 IQITVSDTGIGISKLEQDRIFERFYRVNKGRSRQSGGTGLGLSIVKELSQVLGGQVFVKS 423

Query: 777 SDEGVTTINCRIPS 790
                +      P 
Sbjct: 424 QIGKGSHFTLEFPK 437


>gi|162451033|ref|YP_001613400.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161161615|emb|CAN92920.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 794

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 97/512 (18%), Positives = 191/512 (37%), Gaps = 38/512 (7%)

Query: 297 KEITVNDQLTHTYEILHNLTV-AIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +     ++       +   +  A+     +  +   N +   L+    +  A       L
Sbjct: 293 EARQRAEEARAFLATVAQASDDAVIGTSLDGTILSWNPAAERLYGYRASE-AIGKKLPLL 351

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT-------SNP 408
                    LPE+              +  E  +       G+++ + VT       S  
Sbjct: 352 C--------LPERAGEAEAVLARLRRGERVERFEAVSRTKGGESIDIEVTVSSIVDASGR 403

Query: 409 RGGTIWMFENLTVQVDLETK-------YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
             G   +  ++  +  +E +          +       I+ L E   +    GR+   N 
Sbjct: 404 ATGVSTICRDIGRRKAMEAEVASAHEAERRIRSQLEAVIEQLPEAAILVDAKGRLISCNK 463

Query: 462 -AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
            A +   + E++    G  +     T +      D   LF A+      E  +    L  
Sbjct: 464 LALQYASRVEDDPDPWGNRLCFEHRTPAGEPLAWDERPLFRALQRG---EVVTGAEGLLR 520

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYEL 580
            +D  L      +P         +    ++   A+     A ++ +  +  ++  ++++L
Sbjct: 521 RADRGL------VPVLVNAAQVRSDDGELQGAVAVFHDISAFKEMERQRQEWIGVIAHDL 574

Query: 581 RSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
           R P+  I   + LL  +      +   + ++ I++S   L  +++D+LD + +DA  + L
Sbjct: 575 RQPIQVIATASQLLGRAAGERPVADCRKQLDRITSSIERLRRMIDDLLDASRIDARQLTL 634

Query: 641 NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
           + S + L   L E+ +  A     + +R++V  +G + + +AD  RL QI + +LSNA  
Sbjct: 635 DRSPVNLRAQLGEILEKSAEVTAGHALRLEV--NGDVPAVLADPGRLEQIVTNLLSNAAK 692

Query: 701 FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGL 758
           +      +++      G    +V N G  IPE     +F RF           RGVGLGL
Sbjct: 693 YGRPDGDIVVAVDAGPGSAHVAVTNWGGGIPEASLPYLFKRFSRAPDAVPRSVRGVGLGL 752

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            I ++ +  HGG +S+ SS  G TT    +P 
Sbjct: 753 YITKALVEAHGGSISVESSPSGATTFRFSLPL 784



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 100/350 (28%), Gaps = 66/350 (18%)

Query: 14  IEICTLFSCKIAVFGTIAGM----LLTTIIPIILLIRQRNSLAKKVNETYSFLSEICDQL 69
           + +  L S ++ +FG   G        ++   I  +     L        + L E   + 
Sbjct: 240 VVLVPLVSGRLFLFGAARGAYPIAASLSLASAITTLLLGAMLWVSAARM-NLLDEARQRA 298

Query: 70  SKYHSLLTENNCL-------------TIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFE 116
            +  + L                    + W+   E   + G   +  +       LL   
Sbjct: 299 EEARAFLATVAQASDDAVIGTSLDGTILSWNPAAER--LYGY--RASEAIGKKLPLLCL- 353

Query: 117 NWLKFHHYIKLSKATEKLR--KEGQSFDLVAETQNDCAIKIE----------GRVSGSCA 164
                    +      +LR  +  + F+ V+ T+   +I IE          GR +G   
Sbjct: 354 ----PERAGEAEAVLARLRRGERVERFEAVSRTKGGESIDIEVTVSSIVDASGRATGVST 409

Query: 165 FLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI---S 221
             R   +    +  AE     +      S  + + + L       D  G ++  N     
Sbjct: 410 ICR--DIGRRKAMEAEVASAHEAERRIRSQLEAVIEQLPEAAILVDAKGRLISCNKLALQ 467

Query: 222 YKKNT-------------ETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET--V 266
           Y                 E      +    + R LF+   +  +++ +       +   V
Sbjct: 468 YASRVEDDPDPWGNRLCFEHRTPAGEPLAWDERPLFRALQRGEVVTGAEGLLRRADRGLV 527

Query: 267 STLEHGNNKSYKIVRVLNSFGEAGIAI--DVSKEITVNDQLTHTYEILHN 314
             L +        VR  +   +  +A+  D+S    +  Q      ++ +
Sbjct: 528 PVLVNAAQ-----VRSDDGELQGAVAVFHDISAFKEMERQRQEWIGVIAH 572



 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 89/296 (30%), Gaps = 44/296 (14%)

Query: 169 LSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET 228
           L +      L       ++     +    +  + D  V      G IL  N + ++    
Sbjct: 281 LWVSAARMNL--LDEARQRAEEARAFLATVAQASDDAVIGTSLDGTILSWNPAAERL--- 335

Query: 229 EGIVFQKAIGESRKLF--------KEEIKKRMISSSALEK-------------NFCETVS 267
            G    +AIG+   L          E +  R+     +E+             +   TVS
Sbjct: 336 YGYRASEAIGKKLPLLCLPERAGEAEAVLARLRRGERVERFEAVSRTKGGESIDIEVTVS 395

Query: 268 TLEHGNNKSYKIVRVLNSFGE--AGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN 325
           ++   + ++  +  +    G   A  A   S         +    ++  L  A  + D  
Sbjct: 396 SIVDASGRATGVSTICRDIGRRKAMEAEVASAHEAERRIRSQLEAVIEQLPEAAILVDAK 455

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             L   N+  + L          +P  + L           E L W   +  +F   +  
Sbjct: 456 GRLISCNK--LALQYASRVEDDPDPWGNRLC--FEHRTPAGEPLAWD--ERPLFRALQRG 509

Query: 386 ETH---KDTWHLPNGQTLHVIVT----SNPRG---GTIWMFENLTVQVDLETKYNT 431
           E     +      +   + V+V      +  G   G + +F +++   ++E +   
Sbjct: 510 EVVTGAEGLLRRADRGLVPVLVNAAQVRSDDGELQGAVAVFHDISAFKEMERQRQE 565


>gi|228920690|ref|ZP_04084033.1| hypothetical protein bthur0011_17040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838991|gb|EEM84289.1| hypothetical protein bthur0011_17040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 346

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 107 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 164

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 165 IETETTRLSKLSQNLLKLTLLESDEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 223

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+ ++           ++++G  I E
Sbjct: 224 -DLEKVHVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVLIRDSGIGISE 282

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    RIP+
Sbjct: 283 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIPN 342

Query: 791 KE 792
            E
Sbjct: 343 YE 344


>gi|119476572|ref|XP_001259199.1| two-component sensor protein histidine protein kinase (dhkk, dhkj)
            [Neosartorya fischeri NRRL 181]
 gi|119407353|gb|EAW17302.1| two-component sensor protein histidine protein kinase (dhkk, dhkj)
            [Neosartorya fischeri NRRL 181]
          Length = 2285

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 117/235 (49%), Gaps = 18/235 (7%)

Query: 570  NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILD 629
            +SF+ ++S+ELR+PL  +IG ++LL  S    +   Q +  E I  S+ +LL ++NDILD
Sbjct: 1886 SSFLANISHELRTPLNGVIGNSELLLNS---PVPEAQLEMAESIRMSANLLLAVINDILD 1942

Query: 630  LATVDAGIMKLNYSTIVLNDLLNEVKQSI--ATKMHENNIRIKVISDGKLG---SFVADR 684
             + V+A  M+L+     +  ++ EV +SI   +K    +  + ++ D +L        D 
Sbjct: 1943 FSKVEANKMQLHVVPFDVERMVMEVVRSIPTDSKNGPRSSNVHIVHDIQLQETRHVCGDP 2002

Query: 685  QRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVF 739
             RL QI   +L N++ F+ KG T+ + A  +N         F V + G  IP  +   +F
Sbjct: 2003 VRLRQILGNLLGNSLKFTEKG-TITIGARAENETEDSVRLSFWVADTGIGIPSALIPRLF 2061

Query: 740  NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCRIPS 790
              F        RR  G GLGLSI +  + L GG + + S++   TT      +P 
Sbjct: 2062 RPFTQADASTARRFGGTGLGLSICKLLVELMGGTIDLKSTEHVGTTVSFAVTLPK 2116


>gi|30020112|ref|NP_831743.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|229127408|ref|ZP_04256402.1| hypothetical protein bcere0015_18590 [Bacillus cereus BDRD-Cer4]
 gi|29895662|gb|AAP08944.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|228656027|gb|EEL11871.1| hypothetical protein bcere0015_18590 [Bacillus cereus BDRD-Cer4]
          Length = 443

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 5/238 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            +L      + KA+++KN F+  +S+E+R+PLT I G+++ LK +       +  Q +  
Sbjct: 211 HSLNYMAYKIDKAEQMKNEFIASISHEIRTPLTGIKGWSETLK-TVDHLTEEEIKQGMGI 269

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS  +  L++LV ++LD + + +    L    + L D+L E    +  K  E  I+    
Sbjct: 270 ISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITT 329

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D      + DR RL Q+F  I+ NA+ +S K ST+ ++A +  G  +  V++ G  I +
Sbjct: 330 IDR--MELMGDRNRLKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAK 387

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +   F    +     G G+GL+IV+  + LH G +S++S +   TTI  ++P 
Sbjct: 388 EHLPYIEQSFYQINNHAA--GAGIGLAIVKKMVELHSGVLSVTSKEGIGTTILIKLPL 443


>gi|259414842|ref|ZP_05738765.1| sensor protein GacS [Silicibacter sp. TrichCH4B]
 gi|259349293|gb|EEW61040.1| sensor protein GacS [Silicibacter sp. TrichCH4B]
          Length = 466

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 13/242 (5%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +    A+  K+ F+ H+S+E+R+PL  ++G    L  +    LN +Q + +E +
Sbjct: 67  ELDTARKDAEAANSAKSVFLAHMSHEIRTPLNGVLGMAAALAET---DLNLEQQKMLEVL 123

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI- 672
             S  +LL+++NDILDL  V+AG ++L+ +   +NDL   V +    ++ +  +   ++ 
Sbjct: 124 IESGDLLLSVLNDILDLTKVEAGELELDITPCSINDLFESVCKQFELQVRQKGLSFAIVY 183

Query: 673 ---SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV---ILKAARDNG-DFIFSVKN 725
               +        D  RL Q+   +LSNA+ F+ +G+      +    D   +  FS+++
Sbjct: 184 GGMLEEDNVWAEFDPTRLRQVLGNLLSNAVKFTLEGAITMKATVTQLNDGRLNLDFSIRD 243

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IPED    +F  F         +  G GLGL I      L GG +S +S     T 
Sbjct: 244 TGCGIPEDKQHRLFQPFAQADASISRRYGGTGLGLVISRKICQLMGGDISFTSELGKGTE 303

Query: 784 IN 785
             
Sbjct: 304 FY 305


>gi|189466273|ref|ZP_03015058.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM
           17393]
 gi|189434537|gb|EDV03522.1| hypothetical protein BACINT_02647 [Bacteroides intestinalis DSM
           17393]
          Length = 644

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 8/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
              T     +   +E AL E  +   ++  +K++F+ ++S+E+R+PL  I+GF+D+L + 
Sbjct: 389 YYHTKKLKDELQESESALREAKDRAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVLASG 448

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             G+   +Q  YV+ I  +S +LL L+NDILD++ ++A  +        +  L  +V  S
Sbjct: 449 --GTSVDEQQGYVDIIKTNSDLLLRLINDILDVSRLEADRVTFTIEKCDVVPLCQQVLAS 506

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           ++ +  ++        D +      D QRL Q+   +LSNA  F+ +   + LK   D+ 
Sbjct: 507 VS-QARKSENEFIFECDRESVDLRTDTQRLQQVIINLLSNADKFT-RNGKITLKLEVDDE 564

Query: 718 D--FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
                FSV + G+ IP +  K VF RF       Q  G GLGLSI +  +   GG + + 
Sbjct: 565 KRVATFSVSDTGTGIPLEKQKQVFERFEKLNEYVQ--GTGLGLSICKLTVEKWGGEIWVD 622

Query: 776 SSDEGVTTINCRIPSK 791
           S            P +
Sbjct: 623 SGYTDGARFVFTHPFE 638


>gi|186682599|ref|YP_001865795.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465051|gb|ACC80852.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 740

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 127/239 (53%), Gaps = 4/239 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L EK ++L+KA+E+K  F+ ++S+E R+PL +I+  + +L     G L ++Q + V +I
Sbjct: 202 ELDEKADSLQKANELKTRFLSNMSHEFRTPLNSILSLSRMLLARMDGDLTAEQEKQVTFI 261

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVI 672
             +++ L  LVND+LDLA V+AG +++  S+  ++DL   ++  +   +   +++ + + 
Sbjct: 262 QKAASGLSELVNDLLDLAKVEAGKIEVRPSSFEVSDLFATLRGMLRPLLVQGSSVALNIE 321

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               +G   +D  ++ QI    +SNA+ F+ +G  V + + +     IFSV + G  I  
Sbjct: 322 EPEGIGQIYSDEGKVAQILRNFISNALKFTEQGE-VRVTSVQRGHTVIFSVSDTGIGIAT 380

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F  FV        Q +G GLGL +      L GG +S++S     +T    IP
Sbjct: 381 ADRERIFEDFVQIESSLQKQVKGTGLGLPLSRKLTELLGGSISVTSKLGEGSTFTASIP 439



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 20/106 (18%)

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP--EDMCKSVFN 740
           D+ RL    S+I  NA  ++ +G TV    A +  +F+  +++ G  IP  ED+      
Sbjct: 35  DQARLATAVSEIARNAFQYA-RGGTVEFSVAGEPQEFLIRIQDRGGGIPHLEDVLA---G 90

Query: 741 RFVSNAHRGQRRGVGLGLSIV--ESFINLHGGHVSISSSDEGVTTI 784
           R+ S+         G+GL IV  +  ++       I S     TT+
Sbjct: 91  RYASD--------TGMGLGIVGSQKLMDF----FEIESLPGQGTTV 124


>gi|83312823|ref|YP_423087.1| sensory histidine protein kinase [Magnetospirillum magneticum AMB-1]
 gi|82947664|dbj|BAE52528.1| sensory histidine protein kinase [Magnetospirillum magneticum AMB-1]
          Length = 1012

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 102/647 (15%), Positives = 224/647 (34%), Gaps = 83/647 (12%)

Query: 210  DQAGDILWANISYKKN-----TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE 264
            D  G I + N + ++      TE  G+   + +   R    E           L      
Sbjct: 378  DPEGRITFINPAARRMLGWSETEGVGLNLHEEVHHHRADGSEFPAVACPVWQTLHDGNIR 437

Query: 265  TVSTLEHGNNKSYKIVRVLNSF---------GEAGIAIDVSKEITVNDQLTHTYEILHNL 315
             V    H       +     +          G   +  D+++ I    +      +   L
Sbjct: 438  HVPRDVHWRRDGTPVTVEFTTAPIIQNGRVAGAVTLFRDIARRIRAESEAARNLAVTTAL 497

Query: 316  TVAIAIFDQNRYLQ-FHNRSFVELWEIDL-------AFLATNPSNDELLEFLRSANKLPE 367
               +    ++R L    + S VE+  +         A     P    L   L + + + +
Sbjct: 498  GGILRHSLEDRRLNDILHDSLVEILSLPWLNVEERGAIFLAQPDGKTLA--LVAEHNMSQ 555

Query: 368  QLNWK------------TWKENIFSVYKSSETHKDTWHLPN------------------G 397
             +                  E   +V+ S    +    +P+                  G
Sbjct: 556  AIIQACTVIRMGNCLCGAAAERREAVFASHVDERHQTQVPDMHPHGHYCIPIMNGPDLLG 615

Query: 398  QTLHVIVTSNP----RGGTIWMFEN----LTVQVDLETKYNTLVKVQGETIDHLSEGVAV 449
                 I   +P        + M  +    +  +  +E       ++    ++   +G  +
Sbjct: 616  VLNTYIGHGHPWQKEEEHFLRMVADTLAGIIRRKQIEETLRNSEELSKTLLNATIDGALL 675

Query: 450  FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              P+GRI  +N A  + + T   ++   +    +    +         D FA ++     
Sbjct: 676  MTPEGRILATNEALAARFATTPAQMPGTSFFDWLPQPLAERRR-----DQFAQVLA---- 726

Query: 510  ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV-----NVTDSVRAERALTEKNEALRK 564
            +R+ L    E    ++ +  I P+ +    +  +     +VT+   A++A+ +    L +
Sbjct: 727  DRRPLHSVDER-GGAIFDNRIYPVQDGDGEIRRMAVFSRDVTEQRHAQKAIEKALADLAR 785

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            ++     F    S++LR PL  I G   LL+      L+    + + +    +  +  L+
Sbjct: 786  SNAELEQFAYVASHDLREPLRAITGHLQLLQRLAKDKLDDYALESLLFAVDGARRMDLLI 845

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
             D+LD + +  G        + L +++ +   +++  + E +  +   +   +     +R
Sbjct: 846  RDLLDYSRI--GHADREMEDLDLGEVIADALSNLSAAIAEGHATVTTAT--GMPHAHGNR 901

Query: 685  QRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
              L ++F  ++ NA+ + +      V L+A R  G +  S+++NG  I  +    +F  F
Sbjct: 902  MELTRLFQNLIGNALKYRNPERPPEVELRAVRVGGAWDISIRDNGIGIEPEYFNRIFMIF 961

Query: 743  VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 RGQ  G G+GL++    ++ HGG + + S     +T    +P
Sbjct: 962  QRLHGRGQYEGTGIGLAVCRKIVDRHGGSIRVESEPGKGSTFTVTLP 1008



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 45/147 (30%), Gaps = 9/147 (6%)

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
           +   +       IL +    I   D    + F N +   +             ++E+   
Sbjct: 354 VQTEEARHRLELILASAGEGICGVDPEGRITFINPAARRMLGWSETEGVGLNLHEEVHHH 413

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR------GGT 412
               ++ P  +    W+       +     +D     +G  + V  T+ P        G 
Sbjct: 414 RADGSEFP-AVACPVWQTLHDGNIRHVP--RDVHWRRDGTPVTVEFTTAPIIQNGRVAGA 470

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGET 439
           + +F ++  ++  E++    + V    
Sbjct: 471 VTLFRDIARRIRAESEAARNLAVTTAL 497



 Score = 40.7 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 14/143 (9%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
           +           +    EG+    P+GRI   NPA R +    E           +    
Sbjct: 355 QTEEARHRLELILASAGEGICGVDPEGRITFINPAARRMLGWSETEGVGLNLHEEV---- 410

Query: 488 SRYYNESDGWDLFAAI----ITSFDDERKSLQGTLELLSDS---VLEYSIIP-LPNAQTM 539
             +++ +DG +  A       T  D   + +   +    D     +E++  P + N +  
Sbjct: 411 --HHHRADGSEFPAVACPVWQTLHDGNIRHVPRDVHWRRDGTPVTVEFTTAPIIQNGRVA 468

Query: 540 LTFVNVTDSVRAERALTEKNEAL 562
                  D  R  RA +E    L
Sbjct: 469 GAVTLFRDIARRIRAESEAARNL 491


>gi|37527863|ref|NP_931208.1| aerobic respiration control sensor protein ArcB [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787299|emb|CAE16380.1| aerobic respiration control sensor protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 781

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/402 (17%), Positives = 153/402 (38%), Gaps = 20/402 (4%)

Query: 401 HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG----ETIDHLSEGVAVFGPDGRI 456
            +          + + + L  ++    +    ++ Q       +D   + V     +   
Sbjct: 118 EISEREKAEQAHLILLDKLKEEMKHREQTQIELEQQSVLLKSFLDASPDLVYYRNENNEF 177

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
              N A   L    + +L   T         +R   ++D       +  +++       G
Sbjct: 178 SGCNRAMELLTGKSQKQLVGLTPNDVYDKEVARKVMKTDEKVFRHNVALTYEQWLVYPDG 237

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHV 576
                  +  E   +P  +       +        ER      +AL  A   K +F+  +
Sbjct: 238 -----RKACFELRKVPFYDRVGKRHGLMGFGRDITER--KRYQDALENASRDKTTFISTI 290

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL  I+G + +L  ++   L S+Q+ Y++ I  S+  L N+ NDI+++  ++  
Sbjct: 291 SHELRTPLNGIVGLSRILLDTE---LTSEQNNYLKTIHVSAITLGNIFNDIIEMDKIERR 347

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKIL 695
            ++++   I     +++++      +   +I+  +  +  L +  + D  RL QI   ++
Sbjct: 348 KVQIDNQPIDFTGFMSDLENLSGLLVQPKDIKFVMNPELPLPARIMTDGTRLRQILWNLI 407

Query: 696 SNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ---RR 752
            NA+ F+ KG   +     +    +F V + G  IP D  + +F  +             
Sbjct: 408 GNAVKFTQKGEITVRIWYEEGERLLFEVTDTGIGIPHDELEKIFAMYYQVKGSHGGCPAT 467

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI--PSKE 792
           G G+GL++ +      GG + + S     +     I  P+ E
Sbjct: 468 GTGIGLAVSKRLAQSMGGDIVVESEPGQGSRFTLSIIAPAME 509


>gi|317139765|ref|XP_001817749.2| histidine kinase D5 [Aspergillus oryzae RIB40]
          Length = 1017

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 505 TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
           T      K       L+    +E S      A    T  ++ D    ER L +  + L  
Sbjct: 247 TEIRLRSKGADFRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNN 306

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
             E K  F  ++S+E+R+PL  I+G    +  +    L++ Q + ++ I  SST L  LV
Sbjct: 307 QMESKTKFFSNMSHEIRTPLNGILGTIPFILDTH---LDTDQRRMLDTIQNSSTNLRELV 363

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVAD 683
           ++ILD++ V+AG M L  S   +  ++ +V  +++++  +  + I  + D       + D
Sbjct: 364 DNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVSSRAIDKGLEINYLMDVDVPPMVIGD 423

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS----------VKNNGSSIPED 733
           R R+ Q+   ++ NA+ F+S+G  + ++ + ++G    S          V + G      
Sbjct: 424 RFRIRQVLINLVGNAVKFTSQGE-IHIRCSINHGTATLSKETELLLNFDVVDTGKGFSAR 482

Query: 734 MCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             + +  RF         Q  G GLGL + +  + +HGG ++ SS +      +  
Sbjct: 483 DAERLMQRFSQLGQNGSQQHAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGAKFSFY 538


>gi|157148541|ref|YP_001455860.1| hypothetical protein CKO_04368 [Citrobacter koseri ATCC BAA-895]
 gi|157085746|gb|ABV15424.1| hypothetical protein CKO_04368 [Citrobacter koseri ATCC BAA-895]
          Length = 1060

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 3/246 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              R++R L  +    ++A+E K  F+ H+S+E+R+P++ I+GF +LL+ S     + + 
Sbjct: 564 QRKRSQRLLEAERNKAQQANEEKREFLSHMSHEIRTPVSAIMGFLELLQLSP-ARFSPED 622

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              V+  + +S  LL L+ +ILDL  +++G++      + ++ L+ E     +    +  
Sbjct: 623 KASVDQAAQASRSLLKLIGEILDLEKIESGLLDTVPQWVNVDALIKEKMTLFSALAAQKG 682

Query: 667 IRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           I ++  S      +   D Q L Q+ + ++ NA+ F+ +G  V + A + N     SV +
Sbjct: 683 IDLRYDSRLDPQEAMHLDPQLLGQVLTNLIGNAVKFTQQGH-VRISATKSNAMLALSVSD 741

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           +G  I  +    +F  F         RG GLGL+I  + +   GG +++ S     TT+ 
Sbjct: 742 SGPGISTEEQNRLFTAFSQGKAGKHHRGSGLGLAISRALMTQMGGTIALQSEINRGTTLT 801

Query: 786 CRIPSK 791
             +P +
Sbjct: 802 LNLPVQ 807


>gi|114328501|ref|YP_745658.1| cytosine permease [Granulibacter bethesdensis CGDNIH1]
 gi|114316675|gb|ABI62735.1| cytosine permease [Granulibacter bethesdensis CGDNIH1]
          Length = 1168

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R +  L +  EA   A+  K+ FV   S+ELRSPL  I+G+  L+  
Sbjct: 661 QTALLMNEIRAHRRTDAKLQKAKEAAESANLAKSRFVVGASHELRSPLNAILGYAQLM-- 718

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +L  +  + +  +  S   L  L+  +LD++ ++AG + +    + L D L+++  
Sbjct: 719 DGDETLPPRWQRAIGIMRRSGEHLAGLIEGLLDISKIEAGRIDVARDAVRLGDFLDQIVS 778

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     I         L      D +RL QI   +LSNA+ F+  G  V  +    
Sbjct: 779 MFRIQAEAKGIDFIFDRPETLPDQVYTDERRLRQILINLLSNAIKFTRYG-RVTFRVRWR 837

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVS 773
           +      + + G  I E   + +F  F   +        G+GLGL+I +  + + GG ++
Sbjct: 838 SQIADLDITDTGIGIDEQELERIFEPFHRTSGALHASMPGIGLGLTITKLLVQILGGDIT 897

Query: 774 ISSSDEGVTTINCRI 788
           + S     +T + R+
Sbjct: 898 VQSKLGEGSTFHIRL 912


>gi|266621905|ref|ZP_06114840.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288866436|gb|EFC98734.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 853

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L +  +   +A++ K+ F+ ++S+++R+P+  I+G T +   +       +    +  I
Sbjct: 331 ELEKARQTALEANKAKSEFLANMSHDIRTPMNAIVGMTAI--ATAHMDDRKQVENCLRKI 388

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + SS  LL L+ND+LD++ +++G + L    I L +++  +   +  ++        +  
Sbjct: 389 TLSSKHLLGLINDVLDMSKIESGKLTLTTEQISLKEVVEGIVNIMQPQVKTKKQTFDIHV 448

Query: 674 DGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKN 725
           +  L      D  RL Q+   +LSNA  ++ +G ++ L  + +              VK+
Sbjct: 449 ENILTENVWCDGIRLNQVLLNLLSNATKYTPEGGSIQLSLSEEKSPKGENYVRIYIKVKD 508

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  +  +  K ++  +         +  G GLG++I +  ++   G + I S  +  T 
Sbjct: 509 NGIGMSPEFLKRIYESYSRADGARIHKTEGAGLGMAITKYIVDAMEGTIDIQSEPDKGTE 568

Query: 784 I 784
            
Sbjct: 569 F 569


>gi|160889853|ref|ZP_02070856.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
 gi|156860845|gb|EDO54276.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
          Length = 759

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 145/330 (43%), Gaps = 13/330 (3%)

Query: 467 WKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD-SV 525
             ++   L      R +    + Y +  D       I +  +      Q       +   
Sbjct: 433 CDSQFCELIHHRSGRLLLNEITPYIHPGDLPVFRKNIASRHERTHHKGQYRCNFTGEFQW 492

Query: 526 LEYSIIPLPNAQTMLTF----VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
            E+S   +              N+ +    E+ L E  E L +  E+K SF+ ++S+E+R
Sbjct: 493 WEFSYNTIHTPGHAPIIAGLLQNIQELKDHEQELIESRE-LAEQAELKQSFLNNMSHEIR 551

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PL  I+GF+D+L      S + ++ ++V+ I+ ++ +LL LV D+L+L+ +++G +   
Sbjct: 552 TPLNAIVGFSDMLANEPEFS-DEERQEFVDIINTNTKLLLKLVGDVLELSRIESGNLSFI 610

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
           +    +  LL++V Q+ +  +    ++       +      D  RL Q+ +  L+NA  F
Sbjct: 611 FQRESVRQLLDDVYQTHSLLIQP-PLQFLKDFPPEDVQVNVDPMRLTQVLTNFLNNANKF 669

Query: 702 SSKGSTVILKAARDNG--DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
           + +GS + L     +G  +    V++ G  IP    K +F RF   +   Q  GVGLGLS
Sbjct: 670 TKEGS-IQLGYCCPSGMSEVHLYVEDTGIGIPHSEQKMIFERFYKRSEFSQ--GVGLGLS 726

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I    +   GG + + S +   +     +P
Sbjct: 727 ICVLIVEKMGGRIELRSEEGRGSRFTVVLP 756


>gi|16764742|ref|NP_460357.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167995025|ref|ZP_02576115.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16419913|gb|AAL20316.1| secretion system regulator: Sensor component [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|205327213|gb|EDZ13977.1| secretion system regulator:Sensor component [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|267993280|gb|ACY88165.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157927|emb|CBW17422.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912377|dbj|BAJ36351.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224018|gb|EFX49081.1| Secretion system regulator: Sensor component [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|332988279|gb|AEF07262.1| sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 920

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLT 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|163939802|ref|YP_001644686.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163861999|gb|ABY43058.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 357

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 114/242 (47%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 118 KSINDMTDELNAMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPV--EKRKHYLTI 175

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++       +T  L+  L ++  +      E  + + + 
Sbjct: 176 IETETTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLD 235

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D       AD++ + Q++  ++ N++ F+  G  + +           S+ + G  I E
Sbjct: 236 MDK--VCVTADKESMSQVWINLIHNSIKFTPNGGMITIHLKEHKEFLEVSIHDTGIGISE 293

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    RIP+
Sbjct: 294 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIPN 353

Query: 791 KE 792
            E
Sbjct: 354 HE 355


>gi|325921207|ref|ZP_08183071.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548314|gb|EGD19304.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 477

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 12/248 (4%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +    K E   +    K  F+  + +E+R+P+T ++G ++LL  +   SL++KQ  Y 
Sbjct: 187 AWQLAVHKQELAEQGSLAKTRFLATLGHEVRTPMTGVLGMSELLLKT---SLDNKQRSYT 243

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           E I  +   LL LVND LDLA +++G ++L+     +  L+ EV+  +A    E  +R  
Sbjct: 244 ESIRRAGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQERGLRFS 303

Query: 671 VISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVKNN 726
           +   G LG      D  R+ QI   +LSNA+ F+ +G  V LK           F V + 
Sbjct: 304 LEV-GLLGDITASGDVTRIRQILLNLLSNAIKFTERG-VVGLKLTTLGSYQGLRFEVADT 361

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  I  +    +F RF             G GLGL+I +      GGHV + S     T 
Sbjct: 362 GPGINAEQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELALAMGGHVEVISRLGAGTR 421

Query: 784 INCRIPSK 791
               +P +
Sbjct: 422 FVVDLPLR 429


>gi|228899335|ref|ZP_04063598.1| hypothetical protein bthur0014_5590 [Bacillus thuringiensis IBL
           4222]
 gi|228860366|gb|EEN04763.1| hypothetical protein bthur0014_5590 [Bacillus thuringiensis IBL
           4222]
          Length = 464

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 208 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 265

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 266 TPPEQRLRYLSIIKDESDYITNLVQDLFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNA 325

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 326 MYKERYIKVSFSCSPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISITDEHKRIS 384

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 385 ITIEDEGEGIPPEDLPHIFDRFYRVDKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEV 444

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 445 DYGSCFIVSLPS 456


>gi|51595100|ref|YP_069291.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           IP 32953]
 gi|51588382|emb|CAH19990.1| bifunctional multimodular BarA: sensory histidine kinase in two
           component regulatory system, activates OmpR [Yersinia
           pseudotuberculosis IP 32953]
          Length = 942

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|254412501|ref|ZP_05026275.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180811|gb|EDX75801.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 650

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 143/349 (40%), Gaps = 43/349 (12%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
           L       +    C     + +  D+    I++ DD    +   ++      ++Y   P 
Sbjct: 53  LDIRMPEMDGYQVCETLKADPETRDIPIIFISAIDD----VLDKVKAFRVGGVDYITKPF 108

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS--------------FVQHVSYE 579
              + +    +     R  + + +++  L +  + +                F+ ++S+E
Sbjct: 109 QVEEVLARVEHQLTIRRLSQEVRDRHHKLEQEIQERRKAEKAAAAASKAKSEFLANMSHE 168

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           LR+PL  I+GFT ++       +  +Q +Y+  I+ S   LL+L+ND+LDL+ ++AGI+ 
Sbjct: 169 LRTPLNAILGFTQVMSRDL--KITPEQREYLGIINRSGEHLLDLINDVLDLSKIEAGIIS 226

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNA 698
           L  ++  L  LL+ +++    K  +  + +       +  +   D ++L      +L NA
Sbjct: 227 LYETSFDLYRLLDNLEEMFQIKAEQKKLNLVFSVAPNVPQTIKTDAKKLRVCLINLLGNA 286

Query: 699 MDFSSKGSTVILKAARDNG--------------------DFIFSVKNNGSSIPEDMCKSV 738
           + F+ +G T+ L+                             F V++ G+ I      ++
Sbjct: 287 IKFTEQG-TITLRVNLATEPLTDQNPSDTDSSSLSAFPPRLRFEVEDTGAGISPAEIDNL 345

Query: 739 FNRFVSNAHRGQ-RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           F+ FV      +   G GLGL+I   F+ L GG +++SS     T    
Sbjct: 346 FDAFVQTETGQKMAEGTGLGLTITRKFVQLMGGTITVSSVVGKGTIFKF 394


>gi|82779496|ref|YP_405845.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella dysenteriae Sd197]
 gi|81243644|gb|ABB64354.1| putative sensor for regulator EvgA [Shigella dysenteriae Sd197]
          Length = 1197

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRREVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNEMLPLENSESPFKDVFSNTH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKLDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|332663617|ref|YP_004446405.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332431|gb|AEE49532.1| Hpt sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 572

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/254 (27%), Positives = 123/254 (48%), Gaps = 18/254 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            +  L  + E   ++++ K  F+ H+S+E+R+PL  I GFTDLL  +   SL+ KQ +++
Sbjct: 40  TQIQLIAQKERAEQSEKFKQRFLAHMSHEIRTPLHGIAGFTDLLLET---SLSEKQRRWL 96

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  S+  L  +VN +L+L+ ++AG +KL         +  +V++S++ +     I + 
Sbjct: 97  SSIYHSTERLDEVVNAVLELSKLEAGELKLRKIPFSPAKVAADVQESLSLRAQNKGINLL 156

Query: 671 VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI-----LKAARDNGD------ 718
           +     +  +   D  RL QI   +  NA+ F+ KGS  I         R + D      
Sbjct: 157 LDVHKNVPGALRGDPTRLYQILMNLTGNAVKFTEKGSVTIKMDCAESIERTSDDPATNWV 216

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I  + + G  IP +   +VF+ F         +  G GLGL++ +  + LHGG + + 
Sbjct: 217 TLILRIIDTGIGIPAEKITAVFDSFEQAGEDMVARYGGTGLGLTVTQELVQLHGGDIQVE 276

Query: 776 SSDEGVTTINCRIP 789
           S+    TT   ++P
Sbjct: 277 SALGVGTTFTVKLP 290


>gi|66770463|ref|YP_245225.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|66575795|gb|AAY51205.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. 8004]
          Length = 1147

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 186/471 (39%), Gaps = 32/471 (6%)

Query: 336  VELWEIDLAFLATNPSNDELLEFLR--SANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
             +L  +    +    ++   L+  +       P  +  + W +    +  +S        
Sbjct: 546  ADLQALAERVVGERHAHRAFLDQAQLLERELQPTAVADRAWVQFTERLLAASIGAA---- 601

Query: 394  LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
                 +  +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD
Sbjct: 602  -----SARLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPD 656

Query: 454  GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
             R+   N  ++ L+   +  L  G  + ++    +      +G D+   I       R  
Sbjct: 657  MRLTAWNRRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAG 715

Query: 514  LQGTLELL--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA------ 565
                 E       V+E     LP    + ++ ++TD  RAERAL + NE L +       
Sbjct: 716  SPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSR 775

Query: 566  -----DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
                  + K  F+  +S+++  PL     F   L+ S     N +Q    E + AS    
Sbjct: 776  EAELAQQSKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAA 833

Query: 621  LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF 680
              L++ +LD++ +DAG ++        + L++E+    A       +R++V +  +    
Sbjct: 834  EELLDGLLDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVAGSRGLRLQVHA--RALWV 891

Query: 681  VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
             +DR+ L ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F 
Sbjct: 892  RSDRRLLRRVMQNFLANALRYTRQG-RIVLGMRGRGAQVEQQVWDTGPGIPEHHMRQIFE 950

Query: 741  RF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             F           +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 951  EFRRYQQPFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGQGSMFSILLP 1001



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +  +L + E++   ++  A  +     ++      +    +  +L   G     
Sbjct: 561 AHRAFLDQAQLLERELQPTAVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 620

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 621 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 680

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 681 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 739

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 740 GGYVTSYNDITDYKRAERALLDANENLEQ 768


>gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10]
 gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10]
          Length = 1104

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 3/235 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E LRKAD +KN F+   S+ELR+PL  +IG  + LK    G         ++ I AS   
Sbjct: 426 ENLRKADALKNEFLAVTSHELRTPLYGMIGIAESLKEGAAGEPPEDMKDQLDTIVASGNR 485

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+NDILD + +  G ++L+   + +  L + V       +    + +++     L  
Sbjct: 486 LAHLINDILDFSKLKHGSLRLDVKAVDVKHLASFVTAVTGPLIAGKPVLMQIDMPDDLPR 545

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD  R+ Q+   ++ NA+ F+ KG  + L A          V + G  IP+    ++F
Sbjct: 546 VKADPNRIQQVLYNLVGNAIKFTEKG-RITLSAKAAGKFVTVRVSDTGIGIPKQERDAIF 604

Query: 740 NRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           + FV        R  G G+GL+I +  + LH   + + +  E   +    +P  +
Sbjct: 605 DPFVQVDQLSDHRPDGTGIGLTITKQLLELHDSRLEVDTDTEEGASFFFALPIHQ 659



 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 118/248 (47%), Gaps = 14/248 (5%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             ALT  N++L  A++ +   + ++++EL +P+  I  +   ++   +   +    Q VE 
Sbjct: 842  EALTRANKSLVAAEDARKQLLSNIAHELGTPVALIHSYMQSVRAGLIAMDDPYYHQQVEK 901

Query: 613  ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-- 670
                  IL  L++D+ DLA  +     L   T  ++D L +V ++   ++ +++ R +  
Sbjct: 902  KI---QILNRLISDLFDLARFEQDHKILQRETFSVSDWLTKVDETCRFEVTQHHRRYEGP 958

Query: 671  ----VISDGKLGSFVADRQRLLQIFSKILSNAMDFS-SKGSTVILKAARD--NGDFIFSV 723
                     +      D +R+ Q+ S ++ N++ F+     T+ + A  D      +  +
Sbjct: 959  EIGAFEPYKREWYCHVDVERMDQVLSNLIVNSVKFTTEDDGTIRITAEWDLNERKLVIGI 1018

Query: 724  KNNGSSIPEDMCKSVFNRFVSN-AHRG-QRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
             +NG+ IP++    +F+RF     H G + +G GLGL+IV+  I  HGG V ++S     
Sbjct: 1019 HDNGAGIPKEAVPFMFDRFYRAGDHSGFKPKGSGLGLAIVKQIIESHGGEVDVTSEQGKG 1078

Query: 782  TTINCRIP 789
            T+    +P
Sbjct: 1079 TSFFITVP 1086


>gi|258512528|ref|YP_003185962.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479254|gb|ACV59573.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 429

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 155/396 (39%), Gaps = 22/396 (5%)

Query: 396 NGQTLHVIVTSNPRGGTIWMFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           + +                 F  +  ++       +    +    + +++ GV     DG
Sbjct: 46  DVRMYEYRSRPA-EIAIFRHFNRMAERIQETLADLSQERDILRHILQNMTTGVIYLRSDG 104

Query: 455 RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
           ++++ N A   L++    +     H      T  R Y      D      T         
Sbjct: 105 QVQMVNHAAERLFRRPVEQWKDRDHW-----TVFRNYQLGSAIDHALLFGT-------PW 152

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G  ++     +   ++P+  A  M    +    V     L       R+ + +++ FV 
Sbjct: 153 SGEFQIRDGVTVAVRLVPISAAPRMRNKADGRHDVLM---LVNDVSEWRRLERMRSDFVA 209

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+EL++P+  I GF + L    +      + +++  I   S  + NLV+D+L+L+ ++
Sbjct: 210 NVSHELKTPIAAIRGFAETLLDGDVD--EEAREKFLRTIYEESLRMGNLVSDLLELSKLE 267

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           A    ++   + L ++L      +    +E  I I++  + +L    A+   LLQ+F  +
Sbjct: 268 ASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRL-HVWAEPDLLLQVFLNL 326

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRR 752
           L+NA+ +S   S V +            VK+NG  IP++    VF RF            
Sbjct: 327 LTNAIHYSPPKSRVCVTWDVLVDRVKVHVKDNGIGIPKESLPRVFERFYRVHKDRSRASG 386

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           G GLGL+IV+  +   GG V + S +   +     +
Sbjct: 387 GTGLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTL 422



 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 79/253 (31%), Gaps = 15/253 (5%)

Query: 291 IAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
           +A  + +    ++ +      IL N+T  +     +  +Q  N +   L+   +      
Sbjct: 68  MAERIQETLADLSQERDILRHILQNMTTGVIYLRSDGQVQMVNHAAERLFRRPVEQWKDR 127

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
             +  +    +  + +   L + T     F +            +P      +   ++ R
Sbjct: 128 -DHWTVFRNYQLGSAIDHALLFGTPWSGEFQIRDGVTVA--VRLVPISAAPRMRNKADGR 184

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGP---DGRIKLSNPAFRSL 466
              + +  +++    LE   +  V      +      +  F     DG +       + L
Sbjct: 185 HDVLMLVNDVSEWRRLERMRSDFVANVSHELKTPIAAIRGFAETLLDGDVDEE-AREKFL 243

Query: 467 WKTEENRLSPGTHIRNIAAT----CSRYYNESDGWDLFAAIITSFDDER---KSLQGTLE 519
               E  L  G  + ++        S  + +    DL+  ++ + D  R      + T+E
Sbjct: 244 RTIYEESLRMGNLVSDLLELSKLEASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIE 303

Query: 520 LLSDSVLEYSIIP 532
           L  +  L     P
Sbjct: 304 LPREQRLHVWAEP 316


>gi|312903452|ref|ZP_07762632.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|310633328|gb|EFQ16611.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|315147398|gb|EFT91414.1| PAS domain S-box [Enterococcus faecalis TX4244]
 gi|315577852|gb|EFU90043.1| PAS domain S-box [Enterococcus faecalis TX0630]
          Length = 591

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV +VS+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNVSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PKVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    I   ++ NA+ +S +   + +  A
Sbjct: 449 ILGSYQQQLVAKQLK-TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586


>gi|67925453|ref|ZP_00518795.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67852696|gb|EAM48113.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 679

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 164/402 (40%), Gaps = 24/402 (5%)

Query: 410 GGTIWMFENLTVQVD-LETKYNTLVKVQGETIDHLS----EGVAVFGPDGRIKLSNPAFR 464
           G  I+ F  +  +++  E +    +  +   +D L     +G  +   +  + L NP  R
Sbjct: 247 GELIFSFNEMAKRLERYEEQNIDELTSEKAKLDTLVSTIVDGAILLDTNLNLLLVNPTAR 306

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNES--DGWDLFAAIITSFDDERKSLQGTLELLS 522
            ++  +   +     +  + +  +           +   ++    + E ++ + T     
Sbjct: 307 RMFVWDSKNVIGENILEILPSELTEQLQTPLKQMMEQNTSVSDELESEYQTAEDTPLQPR 366

Query: 523 DSVLEYSII---PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA---DEIKNSFVQHV 576
            S  EY I    P+     +L            + +    + + +    +E K+ F+ +V
Sbjct: 367 ISPGEYRISISQPISRIVRVLLTQVFDQHRETLKGIAMTVQDITREVELNEAKSQFISNV 426

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
           S+ELR+PL NI  F + L         +++ +++E  +  +  L  LVND+LDL+ +++ 
Sbjct: 427 SHELRTPLFNIKSFIETLSEFGEDLTETERKEFLETANHETDRLTRLVNDVLDLSRLESS 486

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILS 696
               +   I L+ L+ +  +S      +  + +K   +  L   +     LLQ+ + ++ 
Sbjct: 487 K-TYHLKGIDLSQLIEQTLRSYQLNAKDKELVLKKEVEPNLPLILGHYDLLLQVMTNLVG 545

Query: 697 NAMDFSSKGSTVILKAAR---------DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           N++ F+     ++++A           +       + ++G  I  +   ++F+RF    +
Sbjct: 546 NSLKFTPSKGMIVIRAYHFKTKSKQFNNKSCVRVEISDSGIGIAPEDQAAIFDRFFRVEN 605

Query: 748 RGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           R     G GLGLSIV + I+ H   +++ S     TT    +
Sbjct: 606 RVHTLEGTGLGLSIVRNIIDKHHSRINLISEVGIGTTFWFDL 647


>gi|163848714|ref|YP_001636758.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526657|ref|YP_002571128.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163670003|gb|ABY36369.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450536|gb|ACM54802.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 854

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 131/735 (17%), Positives = 240/735 (32%), Gaps = 113/735 (15%)

Query: 165 FLRILSLDGIY-SELAETTLKCKKLSNH-ISVFKVLFDSLDFLVWHRDQAGDILWAN--I 220
             R  +       +L E  +   + ++  +   +    +  ++V   D  G +L  +   
Sbjct: 103 LARFATTSDQQLRDLHELNVAFLRAASPVLLRLRATLGNAGYVVAISDAEGTLLDVDGDP 162

Query: 221 SYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCE-----------TVSTL 269
           + ++    +G++      E+       I   + +   ++    E           T + +
Sbjct: 163 ACRRKLARKGLLPGSNWSEAVA-GTNAIGVALATGHVVQLVGAEHYCSGWQDVTCTAAPV 221

Query: 270 EHGNNKS----------YKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY---------- 309
            H +N S          Y++VR   +   A  A +V +   +                  
Sbjct: 222 FHPDNGSLIGVLDITGDYRLVRPFLTGIMAAAAAEVQRRYRLERIKQPIRPRTFPGWTPP 281

Query: 310 -------------EILHNLTVAIAIF----DQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
                         IL  LT AI I     D              L       L   P  
Sbjct: 282 ATTNATTTSGEPSNILERLTDAIRIVSSVIDPAHAPNVITEQMGRLLNASGVMLVEGPPG 341

Query: 353 DEL---------------LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN- 396
           D L               L  L+ A   P  L W+           +       + LP+ 
Sbjct: 342 DTLCTHVWHAPGEIGRHALASLQRAINDPTILTWRASPGPFLKRTLTPTAEVIGFPLPDI 401

Query: 397 -GQTLHVIVTSNP-------RGGTIW-----------MFENLTVQVDLETKYNTLVKVQG 437
            G  L V + + P        G T+            ++ +L          NTL     
Sbjct: 402 SGVILAVRLPTQPWTEIDQQSGATLATHSAAILRHARLYTDLQAYAAQTEVLNTLALFLS 461

Query: 438 ETID----------------HLSEGVAVFGPDGRI-KLSNPAFRSLWKTEENRLSPGTHI 480
             +D                +L  G+ V   + ++   + P            +      
Sbjct: 462 TLLDPIRQIDIVLQRILALTNLDVGIIVLKEEKQLAVTAVPQIAIDQTHMLALIDTVIST 521

Query: 481 RNIAATCSRYYNESDGWDL----FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                 C ++    +   L    F  ++        +  G L + S +    S   L   
Sbjct: 522 GQPIWLCRQHAVAPEAALLPLHGFCDLVALPLILHATNAGALVIGSRAHRHISGEDLTLL 581

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            T+   + +T S    R +  +NEALR+A+ +K++F+  VS++LRSPLT I    + L  
Sbjct: 582 LTIAQQLGLTLSNARLRQVASENEALRQANHLKSTFLAGVSHDLRSPLTAIRASVEDLLE 641

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +      +    +  I+  +  L   V+ +LDL+ ++AG + L+   +  N L+ +V  
Sbjct: 642 RQHHVSPGEHRALLSNIARETARLSRFVDQLLDLSRIEAGTLPLDREWVEFNALVQDVVT 701

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
           S   +      R++V     L     D   + Q+   +L NA  +      + L+A   +
Sbjct: 702 SFHQQYP--TCRVEVCVSPTLPLLYIDPSLITQVLWNLLENAQKYGPSEGPITLEAFCTH 759

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            D + SV + G  IP      +F+RF       R  R G GLGL+I    +  H G + +
Sbjct: 760 TDLVLSVGDRGPGIPASERHRIFDRFYRLERDRRSHRSGSGLGLAICHGIVTAHQGSIWV 819

Query: 775 SSSDEGVTTINCRIP 789
                G +     +P
Sbjct: 820 DERPGGGSVFRITLP 834


>gi|323484204|ref|ZP_08089573.1| histidine kinase [Clostridium symbiosum WAL-14163]
 gi|323402446|gb|EGA94775.1| histidine kinase [Clostridium symbiosum WAL-14163]
          Length = 466

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  R + E  E L +  +I+  F  + S+EL++P+T+I G+ +LL++    +       +
Sbjct: 223 KMSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGMALN-EETTHDF 281

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I   +  + +LV+DIL ++ +++   K    TI + DLL E   S+AT+  E  + I
Sbjct: 282 LKRIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVI 341

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
               +    +  AD +++ ++   ++ NA+ +++    + ++A R+N DF+ +V+++G  
Sbjct: 342 HKQFES--FAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLAVRDSGVG 399

Query: 730 IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP++    +F RF         ++ G GLGL+IV+  +N + G V + S     +T   R
Sbjct: 400 IPQESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVR 459

Query: 788 IP 789
           +P
Sbjct: 460 LP 461


>gi|298246254|ref|ZP_06970060.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297553735|gb|EFH87600.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 495

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 121/266 (45%), Gaps = 6/266 (2%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           +P+P AQ  L  +  T +  A+   ++ NE LR+ ++ +   + +++++L +PLT I GF
Sbjct: 224 VPVPAAQDELGLLAQTFNEMADTIESDVNE-LRRQEQARRELLANIAHDLATPLTAIQGF 282

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           ++ L    +    ++Q +  + I      L  +V D+  + ++++G  +L+ + + L++L
Sbjct: 283 SEALADDMIQDPAARQ-ETAQRIGREVQRLRRMVADLQQMTSLESGRTRLDLAPLSLHEL 341

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E    I  +     I +   +   +    AD  R+ Q+   +L NA   +  G T+ +
Sbjct: 342 IAETLAVIEPECEHAGIVVHNETRDDVPLVQADSDRVTQVLLNLLDNARRHTPVGGTITV 401

Query: 711 KAA--RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFIN 766
            A            +++ G  I       +F RF            G GLGLSIV + I 
Sbjct: 402 GAHPGESGQSVEVWIEDTGVGIDSADLPHIFERFYRADRSRTGATGGSGLGLSIVRAIIT 461

Query: 767 LHGGHVSISSSDEGVTTINCRIPSKE 792
            HGG V   S+    T I+  +P  E
Sbjct: 462 AHGGKVWARSTPGKGTRISFSLPMAE 487


>gi|237716144|ref|ZP_04546625.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262407756|ref|ZP_06084304.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647233|ref|ZP_06724831.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809621|ref|ZP_06768313.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229443791|gb|EEO49582.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354564|gb|EEZ03656.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637413|gb|EFF55833.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294443164|gb|EFG11939.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 644

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +++E+ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   +Q
Sbjct: 397 ELLKSEKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLAVG--GSTEEEQ 454

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L ++V  S++     + 
Sbjct: 455 QSYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSE 514

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL--KAARDNGDFIFSVK 724
            +    +  +    V D QR+ Q+   +LSNA  F+ K   + L      +    +FSV 
Sbjct: 515 NQFLFTTSFESFRMVTDVQRMQQVMINLLSNANKFT-KCGKITLDFSVNEETQMAVFSVT 573

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP++    VF RF       Q  G GLGLSI +  ++   G + I     G    
Sbjct: 574 DTGCGIPKEKQGLVFERFEKLNEYAQ--GTGLGLSICKLIVHKWKGSIWIDPDYTGGARF 631

Query: 785 NCRIPS 790
               P 
Sbjct: 632 VFSHPL 637


>gi|331653801|ref|ZP_08354802.1| sensor protein EvgS [Escherichia coli M718]
 gi|331048650|gb|EGI20726.1| sensor protein EvgS [Escherichia coli M718]
          Length = 1197

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 172/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 518 WIKMPNVTIDTWDLYSEQFYIVTTFSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISF 577

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 578 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 636

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 637 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIH 696

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 754

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 755 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAITASKSIALSCSS 814

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  I  A    D+   +   ++ ++GS
Sbjct: 815 TFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTALVHIDDNHAVIKMTIMDSGS 874

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 875 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 934

Query: 789 PSK 791
           P +
Sbjct: 935 PVE 937


>gi|262194642|ref|YP_003265851.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
 gi|262077989|gb|ACY13958.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
          Length = 1759

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 108/675 (16%), Positives = 226/675 (33%), Gaps = 78/675 (11%)

Query: 167  RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
            R   L  +  ++ +       L      F+ + D L  +VW  +  GD+   N ++ +  
Sbjct: 962  RARHLLRMMIDITDLKEAEASLRESELRFREMADGLPLMVWVHNADGDLELVNQTFCEYF 1021

Query: 227  ETEGIVFQKAIGESRKLFKEEIK-KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS 285
              +  V +    +      +     R   +   +K      + ++H +   + I      
Sbjct: 1022 GVKRDVMKGGRWQILVHSDDADSYTREFYACINDKRPFHAEARVKHADGTWHWIESWGRP 1081

Query: 286  F--------GEAGIAIDVSKEITVN-----------DQLTHTYEILHNLTVAIAIFDQNR 326
                     G  G + D++    +             Q      +L N  V +A+ + + 
Sbjct: 1082 RLGPEGQFRGFVGTSADITARREMEMALRTSRRNESQQRQFLETLLENAKVCVAVMEGDE 1141

Query: 327  -YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
                  NR++  L           P    +   +      PE +      +    ++   
Sbjct: 1142 LRYTLVNRAYQNL----------RPDVSMVGRTVAE--IFPEAVAVGVDNDLRQVLHTGE 1189

Query: 386  ETHKDTWHLP---------NGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ 436
               +  +H P         + Q + +  +       + +    T     +       +  
Sbjct: 1190 MQVQYGYHAPVPGRLDARWDHQVVRLPESEGRARSVLLITWESTEHYRTQGALRESEQRL 1249

Query: 437  GETIDHLSEGVAVFGP-------DGRIK-LSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                D    GV  +         D R++ +   +       E          R +     
Sbjct: 1250 QIAKDAAGFGVYAYDIVSGGISWDERVRSIWGVSADEPLSYELFLSGVHPGDRVVVEAAL 1309

Query: 489  RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                +  G   + A     +   +    T    S   +E+  I    A+ +    +VT  
Sbjct: 1310 ERACDPGGNGHYRAEYRIIN---RHDGKTYWASSTGFVEF--IDGEAARLVGAVQDVTVE 1364

Query: 549  VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
              A+ AL     +L++AD  K+ F+  + +ELR+PL  I   ++LL+    G  N + ++
Sbjct: 1365 KDAKAALLASQMSLQEADRQKDEFLAMLGHELRNPLAAIRTASELLRRKLGG--NPEFTR 1422

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
              E +   +  +  L++ +LD++ +  G ++L    + L  ++ EV   +   M +  + 
Sbjct: 1423 MQEVLDRQTLHMAKLLDGLLDISRIIRGKIRLESELLDLRKIVREVTSDLREGMTDRQLE 1482

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD--FIFSVKNN 726
            I+     +     ADR RL QI + +LSNA+ ++  G  + +  + D+GD   +  VK+ 
Sbjct: 1483 IRADIPPEPLLVEADRVRLAQIVNNLLSNAVKYTPDGGAIHITLSHDSGDGTVVLEVKDT 1542

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRR----------GVGLGLSIVESFINLHGGHVSISS 776
            G  I  ++   VF  F  +     R                   V++ +   GG V   S
Sbjct: 1543 GVGIEAELLPHVFEIFRQSKQSIDRSAGGLGLGLAL--------VKTLVERQGGSVEARS 1594

Query: 777  S-DEGVTTINCRIPS 790
                     + + P 
Sbjct: 1595 EGPGAGAEFSVKFPL 1609


>gi|37523131|ref|NP_926508.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
 gi|35214134|dbj|BAC91503.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
          Length = 1225

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/485 (16%), Positives = 182/485 (37%), Gaps = 25/485 (5%)

Query: 317  VAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKE 376
            + I +   +  ++    +   L+ +    +  + S+  L              +    +E
Sbjct: 753  IPILMLTNDLRIRRFTPAAQRLFNLIATDVGRSLSDIRL------------NFHAPDLEE 800

Query: 377  NIFSVYKSSETHKDTWHLPNGQTLHVIVTS-----NPRGGTIWMFENLTVQVDLETKYNT 431
            ++  V  +    +       G    + +       +   G +    ++    +       
Sbjct: 801  SLLEVIDTLSPKEREVQDLEGYWYLLRIRPYRTVDHQIDGVVLALVDIDALKNSAQLLEA 860

Query: 432  LVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
                    ++ +   + V   D R++ +N AF   ++T   + + G  +  +A       
Sbjct: 861  ARIYAESIVETVRGPLLVLDSDLRVRTANRAFYQTFQTVPAQ-TEGQRLFELAGGQWDIP 919

Query: 492  NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL----EYSIIPLPNAQTMLTFVNVTD 547
                  +          D    ++   E +   V+    +  + P  +   +L   ++T+
Sbjct: 920  RLRLMLENLLLHNAQLLDY--EVEHDFENVGRRVMLLNAQEILAPEQDRLILLALEDITE 977

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              R +++     +   + +E+K+  +   S+E R+PL+ II  T LL +        K+ 
Sbjct: 978  QKRTQQSQQMALQKEYELNELKSRLIAMTSHEFRTPLSTIILSTQLLSSDSPHQSAQKRL 1037

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            +  + I  +   + +L++ IL +   +   +++    + L     ++ + +         
Sbjct: 1038 KQQQRIERAIEQMTDLLDGILSIGQAEIDQVQIRRVPLDLESFCRQLVEEMQA-APGGAH 1096

Query: 668  RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
            R    S G+      D   L QI S +L+NA+ +S+  STV L+ A  +G  +F+V + G
Sbjct: 1097 RPAFESAGQCRGANLDAVMLRQILSNLLTNALKYSAPDSTVRLQLACRDGQAVFTVVDEG 1156

Query: 728  SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
              I  +  + +F  F    +     G GLGL+IV   + L  G ++  S  +  TT    
Sbjct: 1157 IGIAVEDQERLFEPFYRGRNVANIPGSGLGLAIVRRLVELLKGRLAFESRPQQGTTFTVA 1216

Query: 788  IPSKE 792
            +P +E
Sbjct: 1217 LPLEE 1221


>gi|115361278|ref|YP_778415.1| histidine kinase [Burkholderia ambifaria AMMD]
 gi|115286606|gb|ABI92081.1| histidine kinase [Burkholderia ambifaria AMMD]
          Length = 742

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 171/392 (43%), Gaps = 22/392 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKT 469
           T+ + +  +  +  E +     + Q    + H    +A+  GP+ RI L+N  F +L   
Sbjct: 199 TLALSQQRSRALSDEIRRREDAEQQRNGVLMHAPLPIALLSGPEHRIVLANHRFSALCGR 258

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            +    P T +     T +         +   +       +R    G   +     L ++
Sbjct: 259 TDIVDQPLTSVLPGGDTPAIVQALETAREQGCSTTIGEHHDRPEPDGAARVYR---LHFN 315

Query: 530 IIPLPNA-QTMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
             PL      +++ V VT+ V A   L   N         LR A++ K+ F+  + +ELR
Sbjct: 316 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 375

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++     +  ++    +  I      ++ L++D+LD++ +  G + L 
Sbjct: 376 NPLTPISLALELIRNRDGQATPNE----IAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 431

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             ++ L D+++   +  +  + +   R+ V +D        D  RL Q+ + +L+NA  +
Sbjct: 432 KESLRLADIVDRAVEVASPLLEQRRHRLHVDADPD-ARCHGDPVRLSQVVANLLTNAAKY 490

Query: 702 SSKGSTVILKAARD-NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
           +  G  + ++A    +G  I  V +NG+ IP D   S+F  F       +    G+G+GL
Sbjct: 491 TMPGGDITVRATHGVDGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 550

Query: 759 SIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
           ++V S +NLHGG V   S+  G  +T    +P
Sbjct: 551 ALVRSLVNLHGGTVRADSAGPGCGSTFTIALP 582


>gi|319936551|ref|ZP_08010965.1| two-component hybrid sensor kinase/response regulator
           [Coprobacillus sp. 29_1]
 gi|319808349|gb|EFW04909.1| two-component hybrid sensor kinase/response regulator
           [Coprobacillus sp. 29_1]
          Length = 852

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 110/246 (44%), Gaps = 12/246 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  E   +A++ K+ F+ ++S+++R+P+  I+G T +   +       +    ++ 
Sbjct: 329 QELEKARETAIEANKAKSEFLANMSHDIRTPMNAIVGMTAI--ATAHIDNQEQVKNCLKK 386

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS  LL L+ND+LD++ +++G + L    I L +++  +   +  ++     +  + 
Sbjct: 387 ITLSSKHLLGLINDVLDMSKIESGKLSLTMEAISLKEVVEGIIIIMQPQVKAKKQKFGIH 446

Query: 673 SDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-------GDFIFSVK 724
            +     +   D  RL Q+   +LSNA  F+  G ++      +              VK
Sbjct: 447 IEDISTENVWCDGVRLNQVLLNLLSNATKFTPDGGSIDFSLLEEESPKGENYARIHIIVK 506

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  +     + ++  +     R   +  G GLG++I +  ++   G + + S     T
Sbjct: 507 DDGIGMTPAFLEKIYESYSRADGRRIHKTEGAGLGMAITKYIVDAMEGTIDVQSELGKGT 566

Query: 783 TINCRI 788
             +  +
Sbjct: 567 EFHIVL 572


>gi|293376179|ref|ZP_06622424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292645166|gb|EFF63231.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 623

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 13/284 (4%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
             T+    +S   +S + + NA      +      ++ + L    +    A++ K  F+ 
Sbjct: 336 DYTIPPGINSSWRFSFVRIRNAYLENERLLAVKDNQS-QELEYAWKKALVANQAKTHFLA 394

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            VS+EL++PL  I G+  LLK   L   N KQ + +E I  SS +LL  V+++LD + ++
Sbjct: 395 KVSHELKTPLNAIKGYIQLLK---LSIDNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIE 451

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSK 693
            G +KL   TI L    + +++       + ++   V  D ++ S    D  R+ QI   
Sbjct: 452 DGKVKLEIDTIDLFHTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIIN 511

Query: 694 ILSNAMDFSSKGSTVILK-----AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NA 746
           ++SNA+ F+  G  + +         +       VK+ G  I E+   S+F+ F    N+
Sbjct: 512 LMSNALKFTEHG-KIEVSFDLDYQTENEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNS 570

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              Q  G GLGLSI +    + GG++ + S     +T    +P 
Sbjct: 571 ISRQFGGTGLGLSISKRLAEVMGGNLIVESKVNVGSTFTLFLPL 614


>gi|256842305|ref|ZP_05547809.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13]
 gi|256736189|gb|EEU49519.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13]
          Length = 571

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 169/386 (43%), Gaps = 26/386 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           G    F  +  ++  E + +TL  +          ++ ++E +     D +I  +N    
Sbjct: 202 GVAKSFNRMAERLT-EYRKSTLADIIQGKKYIEAIVNSITEPIIGLDRDRKILFANNEAL 260

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLS 522
           ++   +   +        I  + S     S   DL   ++       E+K          
Sbjct: 261 TILNLKRENV--------IGKSASEL---SLRNDLLRRLVRELIQPGEKKEPLKIYADNK 309

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +S  +   IP+   +     V V D +     L +     ++ D  K +F+  +S+EL++
Sbjct: 310 ESYFQVQYIPIRVLENGEAEVYVGDVI-----LLKNITEFKELDSAKTTFISTISHELKT 364

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P++ I+    LL+ +++G++N +Q    E I  SS  LL + +++L +  V+AG ++LN 
Sbjct: 365 PISAIMMSLKLLEDARVGAMNDEQKALAESIKESSNRLLEITSELLKMTQVEAGKLQLNP 424

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                 +L+    ++   +    N  I+V    K+     D +++  + + +LSNA+ ++
Sbjct: 425 KITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSNAIHYT 484

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +   +I+ A + +      V++ G  I     +S+F+R+       + +G GLGL+I +
Sbjct: 485 PENGRIIIGARQQDHSVEIYVQDFGKGIDPRYHQSIFDRYFRVPG-TKVQGSGLGLAISK 543

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
            F+  HGG +S+ S+    +T   + 
Sbjct: 544 DFVEAHGGTLSVDSAVGKGSTFVIKF 569


>gi|218895704|ref|YP_002444115.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218540583|gb|ACK92977.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 463

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TPPEQRLRYLSIIKDESDYITNLVQDLFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYIKVSFSCSPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISITDEHKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITIEDEGEGIPPEDLPHIFDRFYRVDKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DYGSCFIVSLPS 455


>gi|82702320|ref|YP_411886.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410385|gb|ABB74494.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 697

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 117/246 (47%), Gaps = 5/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +     T       +A  +K+ F+  +S+ELR+PL  I+G++ L+ +  L       
Sbjct: 294 EKRQLLENETIARNEAERASRLKDEFLATLSHELRTPLNAILGWSQLILSGNLKK--EDI 351

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I  ++ +   L+ D+LD++++ +G ++L+     + +L+    +S+        
Sbjct: 352 HRGLETIERNARVQNKLIEDLLDMSSIISGKVRLDMRRQDIANLVETAVESVKPTAQAKG 411

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + +K     K  S + D  RL QI   +LSN++ F+ KG  + +   + N      + ++
Sbjct: 412 VILKKTLGKKFDSIIGDSNRLQQILWNLLSNSIKFTPKGGKIEVTVEQRNLFLEIRISDS 471

Query: 727 GSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSS-DEGVTT 783
           GS I       VF+RF         Q  G+GLGL+IV+  + LHGG V   S  +   ++
Sbjct: 472 GSGITSAFMPYVFDRFRQGDASLTRQYGGLGLGLAIVKQLVELHGGTVRAESPGEGQGSS 531

Query: 784 INCRIP 789
               +P
Sbjct: 532 FIVNLP 537


>gi|269217234|ref|ZP_06161088.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122]
 gi|269129371|gb|EEZ60456.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122]
          Length = 575

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 152/314 (48%), Gaps = 8/314 (2%)

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFD-DERKSLQGTLELLSD--SVLEYSIIPLP 534
             + ++ A+      +       AA I  FD  E  +L    + +S   SVL  ++    
Sbjct: 241 RPLESLGASLRAVDADPSRAHTAAAPIGVFDSREMDTLFAHFDSMSSALSVLYGNLESQV 300

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
             +T      +         +   NE L++ ++ K  F+  VS+ELR+PLT+II F DLL
Sbjct: 301 GERTDQLRTAMEQLQEQRAHVERVNERLKRDNQYKTDFLAIVSHELRTPLTSIIAFADLL 360

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             + +     +  + ++ I  +  ILL +V+++L+ A + +G  +++   I ++DL+  V
Sbjct: 361 -DTHVPRDGGESRRQLDEIEKNGQILLEMVDNVLETARIQSGRDEVSIELIDVSDLVGMV 419

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            QS+A    +  I +      ++   ++D ++L +I S +++NA+ F+ +G +V +  AR
Sbjct: 420 VQSLAPLASKKGIALTSDVSSEVPLVMSDWEKLRRILSNLVNNAIKFTGEGGSVAVAVAR 479

Query: 715 D--NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           D   G     V++ G  IP D  + +F RF        RR  G GLGLS+V+    + GG
Sbjct: 480 DAEEGFVRIEVRDTGIGIPADKHELIFERFTQENMSTARRFGGSGLGLSLVKDLAGILGG 539

Query: 771 HVSISSSDEGVTTI 784
            VS++S     +  
Sbjct: 540 DVSLTSRPGEGSEF 553


>gi|149276959|ref|ZP_01883102.1| sensor histidine kinase with PAS signal sensor domains [Pedobacter
           sp. BAL39]
 gi|149232628|gb|EDM38004.1| sensor histidine kinase with PAS signal sensor domains [Pedobacter
           sp. BAL39]
          Length = 813

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 110/653 (16%), Positives = 227/653 (34%), Gaps = 64/653 (9%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWH-RDQAGDILWANISYKKNTETEGIVFQKAI-- 237
             ++ ++L      ++ L +     +   R +       N S  K       +  K +  
Sbjct: 182 VKIRTQELEISERKYRDLIEQSPVAMQVFRSEEMTFEIVNESMLKFLGKTADIIGKPLVV 241

Query: 238 -------GESRKLFKEEIKKRMISSSALEKNFCETVSTLEHG--NNKSYKIVRVLNSFGE 288
                       +     +  +      E+ F E    LE G  +     +       G 
Sbjct: 242 GVPEIKGQPIVDVLYGVYRTGVPLELRAEEVFLEKDGQLEAGYYDVLYRPLYDGTVVTGV 301

Query: 289 AGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQFHNRSFVELWEIDLA 344
            GIAIDV+ +I  N  +  +      +       I+  D    L + N            
Sbjct: 302 LGIAIDVTPQIKFNLAIQESETRFRTMAEGCGIMISTIDLKGNLDYMN----------GD 351

Query: 345 FLA-TNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN--GQTLH 401
           +L  T  S   + E        PE  +++          +  +       L +  GQ   
Sbjct: 352 WLQFTGKSLANMQESGWEELIHPE--DYEKANGIYIHSLEKRKPFATELRLLDAEGQYRW 409

Query: 402 VIVTSNPR-------GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
           +    +PR        G I    + T +     +   + K       H+ E       + 
Sbjct: 410 LRHRGSPRFNADESFEGYICSSVDFTEEKQRLLEIEYINKALMTANQHMEE------VNT 463

Query: 455 RIKLSNPAFRSLWKTEE---NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER 511
           R++ S    +S +   E     L+  T    ++A     +      +L   ++ S  +  
Sbjct: 464 RLRDSEENLQSAFNAGELGSCSLNLKTGKAELSARYRSLFGLPLSGELSWEMVISAVEPE 523

Query: 512 KSLQGTLELLSDSVL------EYSIIPLPNAQTMLTFVNVTDSVRAE------RALTEKN 559
                 L + +           Y+I  L   +     V        E       A+    
Sbjct: 524 FVDDVILVMENARNFGHPIESTYAIRHLETGERRWMRVVGKVRPDDEGNFSDIYAVVMDV 583

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
              ++ +  KN F+  VS+EL++P+T++  +  +L+ +     N+  +  +E   +    
Sbjct: 584 TVQKQDEHRKNDFIAMVSHELKTPITSVQAYLQILERNARAQDNAFVTGILEKSVSQIKK 643

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  +++  L+++ +++G + +      +  LL E ++   T    ++I   + +      
Sbjct: 644 MTTMIDGFLNVSRLESGKIFIERKPFDMAGLLKESEEESKTMFSSHHI---IYAPVLPMV 700

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            VADR ++ Q+ + ++SNA+ ++  GS++ +K     G    SVK+ G  I ++    +F
Sbjct: 701 IVADRNKIGQVINNLMSNAVKYAVAGSSIWVKCEYIGGYVQVSVKDEGMGIAQEEINKLF 760

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +R+  +     G   G G+GL +    I  HGG +   S     +T    IP 
Sbjct: 761 DRYFRSRYVTEGNISGFGIGLYLSAEIIQRHGGKIWAESELGKGSTFYFTIPL 813


>gi|262053232|ref|ZP_06025383.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus 930918-3]
 gi|259158871|gb|EEW43964.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus 930918-3]
          Length = 588

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 229 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 286

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 287 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 339

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 340 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 373

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 374 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAIVLDESKRLNRLVNELLNVARMDAEG 432

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 433 LSVNKEVQPIAALLDKMKIKYRQQDDDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 491

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 492 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 551

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 552 LGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE 588


>gi|294626462|ref|ZP_06705062.1| two-component system sensor protein [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292599261|gb|EFF43398.1| two-component system sensor protein [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1150

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 167/404 (41%), Gaps = 21/404 (5%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  PD R+   N
Sbjct: 605  RLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWN 664

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              ++ L+   +  L  G  + ++    +      +G D+   I       R       E 
Sbjct: 665  RRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEYQIDRRIRHMRAGSPHVFER 723

Query: 521  L--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-----------DE 567
                  V+E     LP    + ++ ++TD  RAERAL + NE L +             +
Sbjct: 724  TRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSREAELAQQ 783

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K  F+  +S+++  PL     F   L+ S     N +Q    E + AS      L++ +
Sbjct: 784  SKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAAEELLDGL 841

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD++ +DAG ++        + L++E+    A       ++++V    +     +DR+ L
Sbjct: 842  LDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVAASRGLQLQVHV--RAIWVRSDRRLL 899

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
             ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F  F     
Sbjct: 900  RRVMQNFLANALRYTRQG-RIVLGMRGRGQQVELQVWDTGPGIPEHHMRQIFEEFRRYQQ 958

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 959  PFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1002



 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 72/209 (34%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 562 AHRAFVDQASLLERELQPTVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 621

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D +  L   NR + +L+      L   
Sbjct: 622 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPDMRLTAWNRRYQQLFGYPDGMLYVG 681

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 682 RPVADLIRYNAERGELGEG-DIEYQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 740

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 741 GGYVTSYNDITDYKRAERALLDANENLEQ 769


>gi|163797321|ref|ZP_02191274.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159177412|gb|EDP61968.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 1047

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 10/269 (3%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S+       T L         +A        E  ++A++ K+ F+ H+S+ELRSPL  I+
Sbjct: 619 SLTRTEERITRLVMERSQLLQQARLDAEAAMEQAQQANQAKSKFLAHMSHELRSPLNAIL 678

Query: 589 GFTDL-LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           G+  L L   +   ++++   +++ I  S   L+ +V DILDL+ +++G ++L      L
Sbjct: 679 GYAQLALLDPESHGISNRAQGFIKTIIDSGNHLVGVVGDILDLSKIESGYLRLENVPFDL 738

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS 706
             L N+    +A    +N   ++   D  L  S + D  R+ Q+    LSNA+ F++ GS
Sbjct: 739 RVLANDAVAIMAASAEKNGNSLRFDLDADLPDSLIGDPVRVRQVILNFLSNAVKFTTNGS 798

Query: 707 TVILKAARDNG-----DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLS 759
            + L+  R            SVK++G  IP      +F  F        R   G GLGL+
Sbjct: 799 -IQLEIRRFTETVGTIRVRVSVKDDGVGIPIAKQADLFQAFTQADMSTTRKYGGTGLGLA 857

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRI 788
           I +  +   GG V + S +   +T    I
Sbjct: 858 INKQLVAAMGGEVGVQSKEGAGSTFWFDI 886


>gi|126462925|ref|YP_001044039.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104589|gb|ABN77267.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 941

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 126/797 (15%), Positives = 248/797 (31%), Gaps = 89/797 (11%)

Query: 50  SLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQTD 109
           + A ++  +      +  + S+  + L     + I  D  +           R+   +  
Sbjct: 4   AWAARLGASRDQQRALEQERSRTQAALQVMPHMLIELDADERLLRGHPGWLDRLPTLEPM 63

Query: 110 TDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFL--- 166
                 +++L      ++ +   ++   G               ++  R +G+  +L   
Sbjct: 64  APGQGLQDFLPADLATEVRRVLAEVETTGAPVS--------RDWQV--RQAGARVWLAIS 113

Query: 167 --RILSLDGIYSELAET----TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
             R+  L              T +                    LV   D    I W N 
Sbjct: 114 AARLPPLAPDRRPGHAVMICDTTELHAQRKQADRLGKFAQLTTNLVIVTDPHQRIEWVNA 173

Query: 221 SYKKNTETEGIVFQK----AIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEH-GNNK 275
           ++++ T   G   +     A+ +  +        R+ +  A  +     V      G   
Sbjct: 174 AFEQQTGHPGQTVRGQPLCAVLQG-EPAPGGCGDRLRAMLAEGRTARAEVEATAACGRRF 232

Query: 276 SYKIV------RVLNSFGEAGIAIDVSKEITVNDQLTHTYEI-----------LHNLTVA 318
              +             G   +A D++      +QL                 +  L   
Sbjct: 233 WLDVSLQPLIDDEGALDGYMAVASDITAHKRQEEQLAAMAAEARATRARLAAAVDVLPDG 292

Query: 319 IAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW-KTWKEN 377
            A FD    L   N  + + +    A +    S + +L     +  + E     + W   
Sbjct: 293 FAYFDAEDRLVVFNPQYRDCYPGAAAAIVPGASFELILRQAVQSGDILEARGREEEWLAA 352

Query: 378 IFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQG 437
             + +      ++   L +G+ L VI    P GG + +  ++T     E +         
Sbjct: 353 RLAAHYRGSNQQEQ-QLADGRWLRVIERQTPDGGRVGLRVDVTALKLAEQRTRI---DFS 408

Query: 438 ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW 497
            T+D   +G+A   P+GR    NPA R ++         G   R + A      +     
Sbjct: 409 ATMDASQDGIAFTDPEGRYIYMNPAHREMFGIATEDEILGRSWRELYA--GDVADHIATT 466

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
            L A + T     R  L G     S+   E S+    +   +    +++  +R ++    
Sbjct: 467 ALPALLSTG--GWRGELIGRRRDGSELPQEVSLTLKADGGIICISRDISRRLREQQERMR 524

Query: 558 KNEALR--KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             E L+  +  E+       ++++L + L  I G   L++  + G+      + +     
Sbjct: 525 LREELQMAQRREVIGQLASGLAHDLNNLLAAIGGSALLIQDLQSGAAEVHAQRILAATEQ 584

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           +      LV   L L     G  + N S I L  LL E    +   +     R+ +    
Sbjct: 585 AG----ALVRRFLTL-----GKRQSNRSRIDLCPLLQEAADLVQAGLRNRT-RLTLALPD 634

Query: 676 KLGSFVADRQRLLQIFSKILSN---AMDFSSK---GSTVILKAA---------------- 713
                 AD   +LQ+   ++ N   A+  +     G  + +  A                
Sbjct: 635 APIWIEADPTDILQVVLNLVINARDAISTAPPREGGHEITVALAPAGPAQLAQTYAVGAP 694

Query: 714 -RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
             D      +V ++G  I   M   VF  + S        G GLGL+IV   +  + G +
Sbjct: 695 CADRRYVSMTVSDSGPGIEPAMQARVFQPYFSTKGAA---GTGLGLAIVTGVLTANHGAI 751

Query: 773 SISSSDEGVTTINCRIP 789
           ++ S+    T      P
Sbjct: 752 ALQSAPGEGTRFTVLWP 768


>gi|157825438|ref|YP_001493158.1| histidine kinase sensor protein [Rickettsia akari str. Hartford]
 gi|157799396|gb|ABV74650.1| Histidine kinase sensor protein [Rickettsia akari str. Hartford]
          Length = 497

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + +     R L  +   + +       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 238 TNYARQIIEEQFETNRNLKAQIVKVEQTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L++     
Sbjct: 298 RDA---EKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLAL 354

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +  +  +  + +      +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 355 VKPRADQAEVALMSRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVAITLEKDEL 414

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 415 AKLVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 474

Query: 774 ISSSDEGVTTINCRI 788
           + S     TTI    
Sbjct: 475 LQSKINEGTTITITF 489


>gi|260778745|ref|ZP_05887637.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604909|gb|EEX31204.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 749

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 115/241 (47%), Gaps = 10/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L        +A+E K+ F+  +S+E+R+P+  ++G  ++L+ SK   L+ +Q + V   +
Sbjct: 210 LKSARFEAEQANESKSRFLASMSHEIRTPMNGVLGILNILEESK---LSREQKKLVNTAT 266

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+++NDILD   +++  ++L +        +  V ++        ++ +  I D
Sbjct: 267 ESGQFLLSIINDILDFTRMESNTLRLEHKPFNFRQCVENVVETFQPSAKVRSLDLNCILD 326

Query: 675 GKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSS 729
           G + +    D  R+ QI   ++ NAM F+ +GS T+ + A    G+    +  V + G  
Sbjct: 327 GSVPANVQGDENRVKQILHNLIGNAMKFTKEGSVTIQVHADTHEGNQVKIVCKVIDTGVG 386

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I       +F+ F  V   +   + G GLGL+I +    L  G++   S+    +T +  
Sbjct: 387 INRSAMDYLFDEFTMVDQTYSRSQEGSGLGLAICKRLCELMDGYIEAESTPSIGSTFSFS 446

Query: 788 I 788
           I
Sbjct: 447 I 447


>gi|291298578|ref|YP_003509856.1| GAF sensor hybrid histidine kinase [Stackebrandtia nassauensis DSM
            44728]
 gi|290567798|gb|ADD40763.1| GAF sensor hybrid histidine kinase [Stackebrandtia nassauensis DSM
            44728]
          Length = 1458

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 138/302 (45%), Gaps = 20/302 (6%)

Query: 505  TSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRK 564
                 E       L+  +D  LE     L N    +   N  D   A   L EK E L +
Sbjct: 976  RRLTTELTQQSNELQRANDE-LEEQARQLENRNREIEIKNR-DVENARLGLEEKAEQLAQ 1033

Query: 565  ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
            A   K+ F+ ++S+ELR+PL +++    LL  +   +L+ KQ  +   I ++ + LL L+
Sbjct: 1034 ASRYKSQFLANISHELRTPLNSLLLLARLLAENTEQNLSPKQIDFARTIHSAGSDLLTLI 1093

Query: 625  NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSF-VAD 683
            +DILDL+ ++AG M ++   +   +L    + +   +  + N++  V  +  L    V D
Sbjct: 1094 DDILDLSKIEAGRMDVDPHEVSFTELCGRAEATFRPQAEDKNLQFSVELEDGLPDVFVTD 1153

Query: 684  RQRLLQIFSKILSNAMDFSSKGSTVILKAARD--------------NGDFIFSVKNNGSS 729
             Q+L Q+    LSNA+ F+  GS V LK  R               +  + F+V + G  
Sbjct: 1154 SQKLQQVLRNFLSNAVKFTDSGS-VTLKVGRTDPSYSFGISSLDGSDASYYFTVADTGIG 1212

Query: 730  IPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I +D  + +F  F         +  G GLGLSI +S+ +L GG + + +S    +T    
Sbjct: 1213 ISDDKMQMIFEPFQQADGGTSRKYGGTGLGLSISKSYADLLGGAIVVDTSPGRGSTFTLY 1272

Query: 788  IP 789
            +P
Sbjct: 1273 VP 1274


>gi|281422568|ref|ZP_06253567.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella copri DSM 18205]
 gi|281403392|gb|EFB34072.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella copri DSM 18205]
          Length = 935

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 6/248 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +       L   NE + +    +  F  ++S+ELR+PLT I    ++L       +  K 
Sbjct: 383 ELGEKNEELKRLNEEVLELTHSRLVFFTNISHELRTPLTLIADPVEMLLED--TGIRGKS 440

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + ++ +  ++  L  LV++ILD   +  G M+L      +   L               
Sbjct: 441 RELLKMVQRNALALQQLVSNILDFRKIQNGKMELKLYRFDIVKTLTMWVGDFQLTAERKQ 500

Query: 667 IRIKVISDGKLG--SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           IR+ +  D   G    +AD++++ +I   +LSNA+ ++  G  + +    +  +    VK
Sbjct: 501 IRLHLDVDDLKGSHEMIADQEKISRIVFNLLSNALKYTPAGGEIFVSLKDEGTNLRLDVK 560

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  I +D    +F RF     +G   G G+GL++V+SF+ LH G   + S     +  
Sbjct: 561 DTGKGISQDEADKIFERFFQA--KGAASGTGIGLALVKSFVELHHGEARVESELGKGSDF 618

Query: 785 NCRIPSKE 792
              IP ++
Sbjct: 619 IVVIPREQ 626


>gi|153947037|ref|YP_001402279.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           IP 31758]
 gi|152958532|gb|ABS45993.1| signal transduction histidine-protein kinase BarA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 930

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F        RR  G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|332203074|gb|EGJ17142.1| sensory box protein [Streptococcus pneumoniae GA47901]
          Length = 449

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 147/380 (38%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +      +  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +  +        + ++L   I  S +    S     E L+  V  +++I   
Sbjct: 135 --------LNRSILELLKIEENYELRDLITQSPELLLDSQDINGEYLNLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALCETVAP--DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI-ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                  K  E   + +++ D  + S     D  ++ Q+   IL+NA+ +SS G  + ++
Sbjct: 293 LNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSSDGGKITVR 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                   I S+ ++G  IP+     +F+RF        R   G GLGLSI +  I  H 
Sbjct: 353 MKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|296111787|ref|YP_003622169.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295833319|gb|ADG41200.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 451

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 26/370 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
             +      V      +  L  GV        I + N    +L             +   
Sbjct: 105 HTQQAAQRDVTNYQSLLASLPVGVINVNRQHVIDVFNETAANLLGIARPTTPIAESLVIR 164

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
             T S    ++         I +     +  Q  +  L      Y    L +A+ M+   
Sbjct: 165 QFTLSELITQTFNTKQHQQSILNLQIAGEVKQYEVSTL------YHQGDLQHAEVMIILY 218

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T  ++AER              +++ F+ + S+EL++PLT I GF + L+     SL 
Sbjct: 219 DLTSVLQAER--------------MQSDFLANASHELKTPLTAITGFVETLQGPAGESLE 264

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           ++Q Q++  ++  +  L +LV+DIL L+ V      ++   + ++D++N+  Q + T   
Sbjct: 265 TRQ-QFLGIVAEEAQRLTSLVSDILSLSRVQQKSEAVSLE-MAVHDMVNDQWQHVQTLAS 322

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             ++ +K             +  +  I   ++ NA+ ++     +++ A +D+  +  +V
Sbjct: 323 VKHVALKNDVPSDF-FVRGFKNDMATILQNLIVNAVKYNKPNGHILITAYKDHQHWQINV 381

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR---RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           K+ G  IP++    +F RF       QR    G GLGLSIV   +  H G + ++S    
Sbjct: 382 KDTGIGIPKNQQSRIFERFYRGDESRQRTIASGTGLGLSIVNEIVRKHNGDLKVNSQVGV 441

Query: 781 VTTINCRIPS 790
            TTI+  +P 
Sbjct: 442 GTTISVTLPL 451


>gi|295704138|ref|YP_003597213.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294801797|gb|ADF38863.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 476

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/365 (18%), Positives = 145/365 (39%), Gaps = 24/365 (6%)

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           V  P+G + + N A   L     N +     I N                +      + +
Sbjct: 110 VISPEGDLIMGNEASERLRSNLLNLIDGWIPIENEVRKERIKAPRPSFEHIEGVKGQNGE 169

Query: 509 DE--------------RKSLQGTLELLSD-----SVLEYSIIPLPNAQTMLTFVNVTDSV 549
            +              +    G L +  D      +L++ +I + +   +   V +  S 
Sbjct: 170 GKIDIDLMMAGEPIFYKGQFLGMLYIGKDVSFLYQLLKWLLIIMLSLTVLFVGVAIYISR 229

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
              +      E   +  +    FV   S+ELR+PL+ ++   + L+  +  + +    + 
Sbjct: 230 LMSKRAMVPIETAFQKQK---EFVADASHELRTPLSVMLSSINALEMQEEVTEDPFSKKL 286

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +  + A    + +LV+D+L LA  D+  ++       + D + +V +S+ T     +I +
Sbjct: 287 INNMKAEVKRMTSLVSDLLTLARSDSNKVEKAMMLFDITDAVQKVMESVETLAISKHIDL 346

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +++   +      D++RL Q+   +L NA+ +++    V ++  +   + I  V++ G  
Sbjct: 347 QLVDTPEKLVVTGDQERLTQLIYILLDNAIKYTTPHGNVNIQVVQHGSECILKVRDTGVG 406

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  D    +F+RF        R   G GLGL+I +  +  H G + + S  E  +T   R
Sbjct: 407 IHPDEKDRIFDRFYRADKSRSRQMGGHGLGLAIAKWIVETHKGKIDVESEQEKGSTFTVR 466

Query: 788 IPSKE 792
           +P  +
Sbjct: 467 LPMSQ 471


>gi|229029070|ref|ZP_04185169.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271]
 gi|228732350|gb|EEL83233.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271]
          Length = 466

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +      LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  IRI    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++++   +++   + +     ++K+ G  I  +  +++  RF        
Sbjct: 358 LHNVLDNAIRYTNQNGDIMITLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKL 457


>gi|229089712|ref|ZP_04220973.1| hypothetical protein bcere0021_5560 [Bacillus cereus Rock3-42]
 gi|228693611|gb|EEL47313.1| hypothetical protein bcere0021_5560 [Bacillus cereus Rock3-42]
          Length = 461

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 107/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKETTS 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 267 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSHINISVTEEHKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 ITMEDEGEGIPSEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFTISLPS 455


>gi|193215590|ref|YP_001996789.1| histidine kinase [Chloroherpeton thalassium ATCC 35110]
 gi|193089067|gb|ACF14342.1| histidine kinase [Chloroherpeton thalassium ATCC 35110]
          Length = 1054

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 170/397 (42%), Gaps = 58/397 (14%)

Query: 419  LTVQVDLETKYNTLV-----------KVQGETIDHLSEGVAVFGPDGRIKLSN---PAFR 464
            L+ + + ET++ T +           K   +   +L  G  +F   G     N   PA  
Sbjct: 686  LSYKRESETRFQTQLIGYDDAPSDWKKSVRKEYTNLPAGSYIFTVRGMDYAGNISKPASV 745

Query: 465  SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            S         +   ++  + A+    +       L    I + ++++++L+  +   +  
Sbjct: 746  SFAILPAPWQTWWAYLLYVLASGGLIFG------LIRWRIATLEEQKRALEKIVAERTAE 799

Query: 525  VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
            V+                       R + AL   NE LRK   +K  F+   +++L++PL
Sbjct: 800  VV-----------------------RQKTALETSNEELRKLSNLKTEFLSIAAHDLKNPL 836

Query: 585  TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
             +I+GF  L+K +   +     +Q  + I  SS  +  L+ D+L+ + +++G ++LN S 
Sbjct: 837  QSILGFAQLVKENAKNA--EMVAQMGDAIYQSSKRMFLLIKDLLETSKIESGKLELNQSP 894

Query: 645  IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
            + L  L + V  S+  + ++    I+V  + K    +AD  R+ ++   ++SNA+ +S  
Sbjct: 895  VDLASLASIVADSLQFQAYQKEQTIQVQME-KSCDVLADGDRISEVLENLISNAVKYSPN 953

Query: 705  GSTVILKAAR---DNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG---V 754
             +T+ +   +   +NGD       +VK+ G  +  +  + +F RF          G    
Sbjct: 954  KTTITIVVRKTRSENGDGQELVQLAVKDEGLGLSAEDKQKIFGRF-QKLSARPTGGESST 1012

Query: 755  GLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            GLGLSIV++ +  HGG V   S      TT    +P+
Sbjct: 1013 GLGLSIVKTLVEAHGGRVWAESDGKNKGTTFFVELPA 1049


>gi|153007726|ref|YP_001368941.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
 gi|151559614|gb|ABS13112.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
          Length = 430

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 159/393 (40%), Gaps = 35/393 (8%)

Query: 411 GTIWMFENLT-----VQVDLETKYNTLVKVQGETI-DHLSEGVAVFGPDGRIKLSNPAFR 464
           G +W+   +       +       N +  V GE + D L++ + VF   G +  +N A  
Sbjct: 59  GAVWLASEVASSEPDEEPAKTAAPNEMAGVSGERLADLLTDPMVVFDHSGTVLFNNSAAL 118

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
             +++ E                   +   +   L   +I   D E +S++    +  D 
Sbjct: 119 EAFQSLET-----------GTALYLRFRAPEMHALIQGVIA--DGEARSIEYFERVPIDR 165

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
             +  +  LP          +    ++E          R+ D +++ F+ + S+ELR+PL
Sbjct: 166 WFKAMVKALPGKDGRPELFVLLFRDQSE---------TRRIDRMRSDFIANASHELRTPL 216

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
            ++ GF + L+     +  + + ++++ +   +  +  L++D+L L+ ++          
Sbjct: 217 ASLRGFIETLQ-GPARNDAAARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNEC 275

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
           + +  +LN V  ++       +I I+        +    R  L+Q+F  ++ NA  +   
Sbjct: 276 VDMTSILNHVADTLTPLAAGLDISIERQLPDHPVTVTGARDELIQVFQNLVENACKYGQA 335

Query: 705 GSTVILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGL 758
           G  VI+K   DN     + + SV++ G  I  +    +  RF          ++G GLGL
Sbjct: 336 GKRVIVKLDEDNSGSSAEVVASVQDFGPGIAAEHLPRLTERFYRIDVETSRAQKGTGLGL 395

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +IV+  +  H G + + S     +T   R+P +
Sbjct: 396 AIVKHILARHRGRLVVRSQLGEGSTFTVRMPKR 428


>gi|149190665|ref|ZP_01868933.1| sensor histidine kinase [Vibrio shilonii AK1]
 gi|148835548|gb|EDL52517.1| sensor histidine kinase [Vibrio shilonii AK1]
          Length = 1141

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/414 (20%), Positives = 169/414 (40%), Gaps = 34/414 (8%)

Query: 402  VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
            +++TS  +G  + + E  T+  +    Y+    +    I+H+ +G+AV     R+   N 
Sbjct: 596  LVLTSALQGRNMQLEEVATIVDEASELYHFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNR 655

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSR--YYNESDGWDLFAAIITSFDDERKSLQGTLE 519
             +  L+      +  G  I ++    ++       D  +     I  + ++      +  
Sbjct: 656  RYLELFSFPAGLIQVGRPIADVIRHNAQQGLCGPGDPNEHVRKRIH-YLEQGSPHTSSRV 714

Query: 520  LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------------- 565
                SV+E    P+P    +++F ++T    AE AL + NE L +               
Sbjct: 715  RPDGSVIEVQGNPMPGGGFVMSFTDITVFREAESALRDANERLEERVIERTQELEQLNKR 774

Query: 566  -----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                        + K  F+  VS++L  PL     F   L  +       + S ++E   
Sbjct: 775  LVFATKKSESESQSKMRFLAAVSHDLMQPLNAARLFASSLSEASKDDETRQLSSHIESAL 834

Query: 615  ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             ++     L+ D+LD++ +++G ++ N     L+++ N +K   +       I   V+S 
Sbjct: 835  GAAE---ELIGDLLDISRLESGKLQTNVRGFQLSEVFNNLKAEFSAISIGQQIDFSVVSS 891

Query: 675  GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
              +    +D + L ++    L+NA  ++ +G  V+L A R NG     V ++G  IPED 
Sbjct: 892  SLI--VKSDPKLLRRVLQNFLTNAFRYNPEG-KVLLGARRVNGRVRIDVWDDGIGIPEDK 948

Query: 735  CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             K +FN F         +G+GLGL+I      +    +S+ S  +  +  +  +
Sbjct: 949  QKEIFNEFTRVDQARADQGLGLGLAISRGIARVLNHQISMRSWPDRGSVFSITL 1002



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 15/228 (6%)

Query: 295 VSKEITVNDQLTHTYE-ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           V +   +        +  + ++   IA+ D+   L   NR ++EL+      +       
Sbjct: 616 VDEASELYHFSRGLLQGAIEHIGQGIAVVDKQLRLVAWNRRYLELFSFPAGLIQVGRPIA 675

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTI 413
           +++               +  ++ I    +    H  +   P+G  + V     P GG +
Sbjct: 676 DVIRHNAQQGLCGPGDPNEHVRKRIH-YLEQGSPHTSSRVRPDGSVIEVQGNPMPGGGFV 734

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
             F ++TV  + E+      +   E          V      ++  N       K  E+ 
Sbjct: 735 MSFTDITVFREAESALRDANERLEER---------VIERTQELEQLNKRLVFATKKSESE 785

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAII--TSFDDERKSLQGTLE 519
                    +AA         +   LFA+ +   S DDE + L   +E
Sbjct: 786 SQSKMRF--LAAVSHDLMQPLNAARLFASSLSEASKDDETRQLSSHIE 831


>gi|331005922|ref|ZP_08329270.1| Response regulator receiver protein [gamma proteobacterium
           IMCC1989]
 gi|330420278|gb|EGG94596.1| Response regulator receiver protein [gamma proteobacterium
           IMCC1989]
          Length = 701

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 172/470 (36%), Gaps = 55/470 (11%)

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLP--NGQTLHVIV----TSNPRGGTIWM---FEN 418
             ++K   E + +  + +      + +   +G+          T +      ++     +
Sbjct: 77  PDDFKMVSEVVLNHLRFNTPIDMVYRIKAKDGRYWWTQACASSTRDENDRVTYLSGVNFD 136

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVF-----GPDGRIKLSNPAFRSLWKTEEN- 472
           L+   D E             +   ++G+  +       DG    S+  ++ L  TEE  
Sbjct: 137 LSHLKDTEKALRLSEARHERILAASNDGIWEWSIGDNNEDGLFHTSHSCWQHLGYTEEEV 196

Query: 473 ----------RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
                           H  ++              D F      F+ E +     +    
Sbjct: 197 DSLPENERLSIWRSHIHPDDLLNAQRAMKRHFFLKDPFDVEYRMFNHEGRIF--WMRSRG 254

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
            ++   +   +  +      +++T    AE+ + +      KA+  K++F+  +S+ELR+
Sbjct: 255 QAIFNGAGRAILMSG---INIDITAVKEAEKRVRKAKNEAEKANNAKSTFLSSMSHELRT 311

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  I+GF+ L   +   SL S Q +  + I ++   LL L+ND+LDLA V+AG + L  
Sbjct: 312 PLNAIMGFSQLAVNN--SSLPSSQRESAKQIYSAGEHLLRLINDVLDLAQVEAGKITLML 369

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             ++   ++ +    ++    E  I +  I SD       AD  RL Q    I++NA+ +
Sbjct: 370 EPVLPKRIIQDCFAFVSPLAVERGINLHFIDSDADTICVYADSMRLKQCLLNIINNAVKY 429

Query: 702 SSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSI 760
           ++   +V +   +        V++ GS I  +  K +F  F    A      G G+GL +
Sbjct: 430 NTDNGSVFVSLKQKKNSVCIIVEDTGSGISSEKQKQLFQPFNRLGAEHSAVEGSGIGLVV 489

Query: 761 VESFINLHGGHVS---------------------ISSSDEGVTTINCRIP 789
            +  +    G +S                     + +  +  +     +P
Sbjct: 490 TKELVEKMQGTLSYHDAVYNLNDMKGVAGKNDGVVKNELQSGSGFTIELP 539


>gi|217963311|ref|YP_002348989.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|217332581|gb|ACK38375.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|307572110|emb|CAR85289.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 459

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 15/282 (5%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---------ALTEKNEALRKADEIKN 570
           L+S   +   ++ L NA   +   N   ++   R         +  +    L K++  + 
Sbjct: 181 LISGRYIVNPVVKLTNATKKIRKGNYDVALEVRRKDEIGQLADSFAKMASELEKSEAARQ 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            FV +VS+EL+SPLT++ GF  LL +  L     +Q++Y+  +S  +T L +L   +L L
Sbjct: 241 EFVANVSHELQSPLTSMQGFARLLGSGTL--TEKEQAEYLTVLSEETTRLSSLTKQLLTL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A++D          + L     ++ Q       E  + I +  D    ++  D + L Q+
Sbjct: 299 ASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL--DLADVNYTGDAELLYQV 356

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           +S +L+NA+ F+ +G  + +    +  +    V+++G  I +     +F RF        
Sbjct: 357 WSNLLTNAIKFTPQGGNIQIHLYEEGTNVFVEVQDSGVGISKSDMAKIFERFYKANQSRT 416

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           R     GLGLSI +  I LH G +++ SS E  TT   ++P 
Sbjct: 417 REEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458


>gi|166366966|ref|YP_001659239.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166089339|dbj|BAG04047.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 368

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 7/245 (2%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +  +   +  +   +L   ++ +   +  +++ELR+PLT + G+ + L    +      
Sbjct: 124 PELNQLAISFNQMAISLADVEKRRQELIGDLTHELRTPLTVVRGYLEELADGAIKPNPEL 183

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             + V      +  L  L +D+ +L+  ++G + +    + L  LLN + +  A ++ E+
Sbjct: 184 YQKLV----KETRRLERLTHDLQELSRAESGYLSIKLQPVNLLPLLNSLIEKFADQLLED 239

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
              +++     L S +AD  RL QI   +L NA+ ++  G+ + L+  RD      +V +
Sbjct: 240 GPTLQLDCPPNLPSVMADPDRLEQILVNLLGNAIRYTDNGA-ITLQVTRDKNRLQIAVID 298

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +    +F RF        R   G G+GL+I    + LH   + + S     +T
Sbjct: 299 TGIGIAAEDLPFIFERFWRADRSRSRYSGGSGIGLAITRRLVELHQSQIEVESELGKGST 358

Query: 784 INCRI 788
               +
Sbjct: 359 FRFSL 363


>gi|160898519|ref|YP_001564101.1| histidine kinase [Delftia acidovorans SPH-1]
 gi|160364103|gb|ABX35716.1| histidine kinase [Delftia acidovorans SPH-1]
          Length = 774

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 15/287 (5%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFV---NVTDSVRAERALTEKNEALRKADEIKNSFV 573
            L L    ++E S  P  +A   + F    +VT   + + AL +       A + K  F+
Sbjct: 226 ELALGDGRLVEVSTTPTTHAGEPVVFCLVSDVTALRQVQAALVDAKLRAESASQAKTQFL 285

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             +S+E+R+PL  I+G  +LL  S+   + S+Q++Y+  +  +S  LL +VND LDL+ +
Sbjct: 286 ATMSHEIRTPLFGILGTLELLALSR---VPSEQTRYLGAMQQASASLLRIVNDSLDLSAI 342

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK-LGSFVADRQRLLQIFS 692
           +AG ++L        +LL+ V   + ++  +  +++  +SD K     V D  RL QI  
Sbjct: 343 EAGRLQLEAHAFSATELLDSVAAGLLSRAEQKGLQLYAVSDVKTPPLLVGDALRLRQILD 402

Query: 693 KILSNAMDFSSKGST-VILKA---ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
            ++ NA+ F+  G   + L+    + +  D  F V++ G  I  +    +F+ +      
Sbjct: 403 NLVGNAIKFTFSGHVAIRLQVMGESEEGTDLRFQVQDTGIGIDPEQQPFLFDPYFRAHAA 462

Query: 749 GQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT--INCRIPSK 791
            Q+  +G GLGLSI        GG ++ +S     T      R+P +
Sbjct: 463 TQQQVQGAGLGLSICLRLSQEMGGRLTAASQPGLGTCVSFELRLPRE 509


>gi|312794584|ref|YP_004027507.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181724|gb|ADQ41894.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 565

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 150/408 (36%), Gaps = 68/408 (16%)

Query: 400 LHVIVTSNPRGGTIWM-FENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           + + ++S    G +   F+ + T      ++     +     + ++S+GV        I 
Sbjct: 210 IRIEISSQDEIGKLASAFKTMATNVKKYISELEFEKQKLERILQNMSDGVLAVNSKNEII 269

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N + +   K             ++        ++ D                  +   
Sbjct: 270 HINESAKRFLKG------------DVERFLEHVQSDKDWC----------------VTQR 301

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +  +    LE S     ++      + +   +  +  L          D ++  FV  VS
Sbjct: 302 IYEVDGWTLEVSTASFIDSYQGTGTIFILHDITQQAKL----------DRMRKQFVADVS 351

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+T I  +++ L      ++   + +++  I      +  L++D+L L+ +D+G 
Sbjct: 352 HELRTPITTIKTYSETLLDVDDETV---KKKFLNVIIKECDRMTRLISDLLYLSRLDSGE 408

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             L    + +++L+  V + +     + N ++   +   +    ADR RL Q+   +++N
Sbjct: 409 NILKIEEVNISELVRFVCEKMRIHAKKKNQKLLCSTQENV-VIEADRDRLEQVLINLINN 467

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A+ +  +G  + +   +D      +VK+NG  IPE+    +F RF               
Sbjct: 468 AVVYVQEGGQIEVGLEKDEEHVRITVKDNGPGIPEEDLPRIFERFYRVDK---------- 517

Query: 758 LS-------------IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +             I +  +  HGG + + S +   T     +P K+
Sbjct: 518 -ARSRSLGGSGLGLSIADEIVKAHGGKILVESKEGVGTKFTVVLPIKK 564


>gi|304396312|ref|ZP_07378193.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304355821|gb|EFM20187.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 777

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 144/376 (38%), Gaps = 14/376 (3%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E +T +   + +           +D   + V     D +    N A   L    E +L  
Sbjct: 138 EEVTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTGKSEKQLIG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         +    E+D       +  +++   +   G       +  E   +P  + 
Sbjct: 198 LTPRDIYDDEAATKVLETDEKVFRHNVSLTYEQWLQYPDG-----RKACFEIRKVPYYDR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
               + +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 253 VGKRSGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLD 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q +Y++ I  S+  L N+ ND++++  ++   ++L+   +     L +++ 
Sbjct: 311 T---DLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPLDFTGFLADLEN 367

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                     ++  +     L   +  D  RL QI   ++ NA+ F+ +G  V+      
Sbjct: 368 LSGLLAQPKGLKFVLAPQLPLPHMISTDGTRLRQILWNLIGNAVKFTQQGEIVVRVTYEQ 427

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHV 772
           +    F V+++G  I +D    +F  +     +   +   G G+GL++        GG +
Sbjct: 428 DETLRFEVQDSGMGIRQDEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQAMGGDI 487

Query: 773 SISSSDEGVTTINCRI 788
            + S+    +     I
Sbjct: 488 RVHSAPGQGSCFTVEI 503



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 27/206 (13%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVA-----ETQNDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +L++  +KL +E ++ DL       ET      +I  R     A  R   +D + 
Sbjct: 81  EESRQRLARLVDKL-EEMRTRDLELNQQMKETITQLNQEISDRKKAELA--REQVMDKLR 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            E+        +L    S  +   D+   LV++R+        N + +  T   G   ++
Sbjct: 138 EEVTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLT---GKSEKQ 194

Query: 236 AIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI------VR 281
            IG   R ++ +E   +++ +   EK F   VS           G    ++I       R
Sbjct: 195 LIGLTPRDIYDDEAATKVLETD--EKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDR 252

Query: 282 VLNSFGEAGIAIDVSKEITVNDQLTH 307
           V    G  G   D+++     D L +
Sbjct: 253 VGKRSGLMGFGRDITERKRYQDALEN 278


>gi|304311042|ref|YP_003810640.1| histidine kinase [gamma proteobacterium HdN1]
 gi|301796775|emb|CBL44987.1| histidine kinase [gamma proteobacterium HdN1]
          Length = 542

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 12/252 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            D  R  + L    E+   A   K SF+ ++S+E+R+P+  +I    LL  +    L+++
Sbjct: 150 HDVRRLNKDLLRARESAEVASRAKASFLSNMSHEIRTPMNGVIASAQLLADT---PLDAE 206

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q   V  I+ S+  LL ++ND+LDL+ ++ G M L   +  LN++L E       +  E 
Sbjct: 207 QKDLVGLINRSANTLLAVLNDLLDLSKIETGTMTLEKRSFDLNEILQEACDLCIPQAEER 266

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-----F 719
            + + + I +G   S  AD  R+ Q+   +++NA+ F+ +GS V ++   D  D      
Sbjct: 267 GVNVCLTIEEGTPLSMFADPVRIRQVVMNLVANAVKFTPEGS-VTVEVGHDQIDEQRFNV 325

Query: 720 IFSVKNNGSSIPEDMCKSVFNRF-VSNAHRGQRRG-VGLGLSIVESFINLHGGHVSISSS 777
           I  + + G  IP+D    +F+   V  A   +  G  GLGL+I +S ++L  G + + S 
Sbjct: 326 IVEINDTGIVIPKDRIDKLFDEGDVDAASSARHFGSTGLGLTICKSLVDLMDGVIEVDSG 385

Query: 778 DEGVTTINCRIP 789
                +    +P
Sbjct: 386 AGKGASFIVTLP 397


>gi|302556732|ref|ZP_07309074.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus
           Tu4000]
 gi|302474350|gb|EFL37443.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus
           Tu4000]
          Length = 643

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 118/242 (48%), Gaps = 4/242 (1%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           R+  A   + E L + D  K +F  H+S+ELR+PLT I+G    L+T   G+ ++  +  
Sbjct: 335 RSYEAQQRRAEELAELDRAKTTFFSHISHELRTPLTLIMGPVAELRTQLAGA-DACVTDE 393

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           ++ I  +   L  LVN +LD + ++AG M+  Y  + L+    ++     + + +  +  
Sbjct: 394 LDVIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSRTTADLASVFRSAVEKAGLDF 453

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +V           DR    ++   +LSNA+ F+  GS + +     +   + +V + G  
Sbjct: 454 RVDCPQLPEPVYVDRGMWEKVILNLLSNALKFTFDGS-IRVTVRAGDTHAVVTVADTGVG 512

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           +P      +F RF  V NA      G G+GL++V+  I LHGG ++  S++   T  + R
Sbjct: 513 VPRQEMPRLFERFHRVENARSRSHEGSGIGLALVKELIALHGGTITADSTEGEGTRFDVR 572

Query: 788 IP 789
           +P
Sbjct: 573 LP 574


>gi|150389093|ref|YP_001319142.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149948955|gb|ABR47483.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 471

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 125/267 (46%), Gaps = 9/267 (3%)

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           +Y  I    AQ M+ + N  +   AE+ L    E     D+IKN F  ++S+EL++P+  
Sbjct: 179 DYVHIEKDYAQKMILYFNEREV--AEKELVATLEL----DKIKNEFFGNISHELKTPVNV 232

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           I G   LL   +    N    +Y++ +  +   L+ LVN+++D   +D+G   LN   + 
Sbjct: 233 IFGTVQLL-DVQAKEGNVCNDKYLKIMKQNCYRLIRLVNNLVDTTKLDSGFYDLNLQNVN 291

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           + +++  +  S+A  +    + ++  +D +      D +++ +I   +LSNA+ F+  G 
Sbjct: 292 VVNVVESITLSVAQYVEGKGLTLEFDTDVEEKVLACDSEKIERIMLNLLSNAVKFTDIGG 351

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESF 764
            +I+         I SVK+ G  I     K +F RF            G G+GLS+V+S 
Sbjct: 352 KIIVNMTDKGSHIIISVKDTGIGISPKDLKVIFQRFKQVDKSLTRNSEGSGIGLSLVKSL 411

Query: 765 INLHGGHVSISSSDEGVTTINCRIPSK 791
           + +HGG V   S     +     +P K
Sbjct: 412 VEMHGGRVYTESQLGKGSNFIIELPVK 438


>gi|320333043|ref|YP_004169754.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319754332|gb|ADV66089.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 1349

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 5/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A      + EAL + D  K +F  +VS+E R+PLT ++G  + L       +   Q + +
Sbjct: 324 AYAQERARAEALAELDRAKTTFFSNVSHEFRTPLTLMLGPLEELLNDA--DVTPAQRREL 381

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
           +    ++  LL LVN +LD   ++AG  +  +    L  L  ++  +  + +    ++ +
Sbjct: 382 DVTHRNALRLLKLVNTMLDFTRIEAGRAEATFQATDLAALTADLASAFRSLVEGAGLQFE 441

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSI 730
           V       +   D     ++   +LSNA  F+ +G  + +    D G F   V ++G+ I
Sbjct: 442 VTCPPLSEAAYVDHGLWEKVVLNLLSNAFKFTFEG-RIRVTLREDEGHFTLQVTDSGTGI 500

Query: 731 PEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           P      VF RF  V  A      G G+GL++V   + LHGG + + S     TT    +
Sbjct: 501 PAADLPRVFERFHRVEGARGRSFEGTGIGLALVRELVTLHGGDIRVDSEVGVGTTFTVTL 560

Query: 789 PS 790
           P 
Sbjct: 561 PK 562



 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 98/483 (20%), Positives = 186/483 (38%), Gaps = 42/483 (8%)

Query: 334  SFVELWE---IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD 390
            +  +++    +   F+   P    LL      ++   + +   +     S++ + E  + 
Sbjct: 871  AATDMYGAAALAPYFIGGRP--YGLLTVASQQHQAWTEQDRAVFSAVARSMHLAFERAEQ 928

Query: 391  TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVF 450
            T  L   Q   +   +    G   +  +L+V  D       + + Q   +  L EG A +
Sbjct: 929  TEQLAL-QNAALDARTRTLEGFALLTRDLSVHDDP---LTLVRRAQELVLPLLPEGYAAY 984

Query: 451  GP-DGRI-----KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAII 504
               DGR      ++ +    +L    E  L   T         +R       +D     +
Sbjct: 985  YELDGRTWRLRSQVGDRQDDALQAYVEAGLPFETTSSLTVPWRTREGYYVAEYDQRTDQL 1044

Query: 505  TSFDDERKSL-------QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA--- 554
            + F + R  L        G +  +    L       P  + +L  V  +  +  ERA   
Sbjct: 1045 SGFQERRGGLASVPVMVHGEVYGIFGVALRVHRTWGPGERAVLETVARSLGLAVERAQSL 1104

Query: 555  --LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
              L E+   L +++     F    S++L+ PL  I  FT+LL     G L+ +  QY+ +
Sbjct: 1105 ADLAERTHQLERSNRELEQFAYVASHDLQEPLRTIGSFTNLLARRYAGQLDDRADQYINF 1164

Query: 613  ISASSTILLNLVNDILDLAT----VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
              +++  L  L+ D+L  +     VDA      ++ +   +++ +V   +          
Sbjct: 1165 TLSATERLKRLIQDLLAYSRTRQPVDA------FTHVDTAEVVRDVIADLGDLRDRTG-- 1216

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAARDNGDFIFSVKNN 726
              V+    L S     + L  +F  ++ NA+ F        V ++A R  G + F V++N
Sbjct: 1217 -GVVDAQALPSVHGSPELLRHVFQNLIGNALKFHHPDRAPHVRVRAVRVPGAWQFDVQDN 1275

Query: 727  GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            G  I       +F  F      G+R G G+GL+IV+S +  HGG V + S+ +  +T + 
Sbjct: 1276 GVGIEPAYHARIFGIFQRLHAVGEREGNGIGLAIVKSIVERHGGQVMVHSTPDQGSTFSF 1335

Query: 787  RIP 789
             +P
Sbjct: 1336 TLP 1338


>gi|229917024|ref|YP_002885670.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229468453|gb|ACQ70225.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 164/376 (43%), Gaps = 24/376 (6%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T     + +     +     +  + + +     +   +  N A   L++        G  
Sbjct: 283 TSLRSQQDQVELEREKTARILHTMRDSIVYTELETNERFVNSALFDLYEHPLPSTERG-S 341

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +  IA     + N+ D  +          +E          + D    Y+   +   Q  
Sbjct: 342 LYPIAMYYPMFMNQIDDPEELNQFTKRAKEEG---------IFDETYTYT---MQEGQKT 389

Query: 540 LTFVNVTDSVRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           +        ++ ER     ++       + + +K   V  VS+ELR+PLT+I+GF++LLK
Sbjct: 390 IRMYAEPIDLQNERVGVIFVSRDITQETEINRLKTELVATVSHELRTPLTSILGFSELLK 449

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
           + +L   N+K+ +Y++ I++ +  L  LV+D+LD+  ++AG+   ++    L DLL+++ 
Sbjct: 450 SRQLE--NTKRERYLDMIASETKRLERLVSDLLDVQKMEAGMSVPDFKVESLYDLLSDLL 507

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +  A     +        D  L     D  +L Q+FS IL+NA+ +S +G  V +    +
Sbjct: 508 EIHAGSTEHH--FFHFDCDESL-FVAGDPAQLRQVFSNILNNAIKYSPRGGNVTVDVTCE 564

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
           +      + + G  + E+    +F++F  +A     +  G GLGL+I +  + LHGG +S
Sbjct: 565 DDTIQIGITDEGLGLSEEDAARIFDKFYRSASEESKRIGGTGLGLAICKEIVQLHGGTIS 624

Query: 774 ISSSDEGVTTINCRIP 789
           + S     TT+   +P
Sbjct: 625 VQSQLGEGTTMIVELP 640



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE--IDLAFLATNPSND 353
           S++  V  +   T  ILH +  +I   +     +F N +  +L+E  +      +     
Sbjct: 287 SQQDQVELEREKTARILHTMRDSIVYTELETNERFVNSALFDLYEHPLPSTERGSLYPIA 346

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ-TLHVIVTS----NP 408
                  +    PE+LN  T +     ++  +     T+ +  GQ T+ +        N 
Sbjct: 347 MYYPMFMNQIDDPEELNQFTKRAKEEGIFDET----YTYTMQEGQKTIRMYAEPIDLQNE 402

Query: 409 RGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH 442
           R G I++  ++T     ET+ N L      T+ H
Sbjct: 403 RVGVIFVSRDIT----QETEINRLKTELVATVSH 432


>gi|153806976|ref|ZP_01959644.1| hypothetical protein BACCAC_01252 [Bacteroides caccae ATCC 43185]
 gi|149130096|gb|EDM21306.1| hypothetical protein BACCAC_01252 [Bacteroides caccae ATCC 43185]
          Length = 1344

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 102/226 (45%), Gaps = 4/226 (1%)

Query: 566  DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
            +++K  F  ++S+E R+PLT I+G  ++L    LG+        +  I  ++  + NL++
Sbjct: 817  NQVKLRFFTNISHEFRTPLTLILGQIEVLMQMDLGTT---IYNRILRIYKNAWHMRNLIS 873

Query: 626  DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
            ++LD    + G +KL      L     ++         +  I  +  +  +  S   D +
Sbjct: 874  ELLDFRKQEQGYLKLKVEEQNLVAFTRQIYMCFYEYAQKKEITYRFDNVEETISVWFDSK 933

Query: 686  RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
            +L ++   +LSNA  ++    ++ ++        I SV + G  IPE+    +F RF   
Sbjct: 934  QLQKVIFNLLSNAFKYTPNKGSIRVEVRMLASQAIVSVCDTGVGIPEEHISKIFERFYQT 993

Query: 746  AHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +      G G+GL++ +  +N+H G + + S+    T     +P 
Sbjct: 994  DNSSSFTLGTGIGLALAKGIMNMHHGKIDVESTVGKGTKFTLSLPL 1039


>gi|330876334|gb|EGH10483.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 626

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 10/220 (4%)

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
           +S+E+R+PL  I+GFT LL+ S+   L  +Q  Y+  I  S+  LL+++N+ILD + ++A
Sbjct: 1   MSHEIRTPLNGILGFTHLLQKSE---LTPRQFDYLGTIEKSADNLLSIINEILDFSKIEA 57

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKI 694
           G + L+     L DLL +    +A   H   + +  ++      +   D  RL QI + +
Sbjct: 58  GKLVLDNIPFNLRDLLPDTLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNL 117

Query: 695 LSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--R 748
           +SNA+ F+ +G+ V    +     ++     SV++ G  +     +++F  F    +   
Sbjct: 118 VSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSLS 177

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL I +  I   GG + + S+    +     +
Sbjct: 178 RQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL 217


>gi|255016481|ref|ZP_05288607.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|298377751|ref|ZP_06987702.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
 gi|298265454|gb|EFI07116.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
          Length = 571

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 169/386 (43%), Gaps = 26/386 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           G    F  +  ++  E + +TL  +          ++ ++E +     D +I  +N    
Sbjct: 202 GVAKSFNRMAERLT-EYRKSTLADIIQGKKYIEAIVNSITEPIIGLDRDRKILFANNEAL 260

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLS 522
           ++   +   +        I  + S     S   DL   ++       E+K          
Sbjct: 261 TILNLKRENV--------IGKSASEL---SLRNDLLRRLVRELIQPSEKKEPLKIYADNK 309

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +S  +   IP+   +     V V D +     L +     ++ D  K +F+  +S+EL++
Sbjct: 310 ESYFQVQYIPIRVLENGEAEVYVGDVI-----LLKNITEFKELDSAKTTFISTISHELKT 364

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P++ I+    LL+ +++G++N +Q    E I  SS  LL + +++L +  V+AG ++LN 
Sbjct: 365 PISAIMMSLKLLEDARVGAMNDEQKALAESIKESSNRLLEITSELLKMTQVEAGKLQLNP 424

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                 +L+    ++   +    N  I+V    K+     D +++  + + +LSNA+ ++
Sbjct: 425 KITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSNAIHYT 484

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +   +I+ A + +      V++ G  I     +S+F+R+       + +G GLGL+I +
Sbjct: 485 PENGRIIIGARQQDHSVEIYVQDFGKGIDPRYHQSIFDRYFRVPG-TKVQGSGLGLAISK 543

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
            F+  HGG +S+ S+    +T   + 
Sbjct: 544 DFVEAHGGTLSVDSAVGKGSTFVIKF 569


>gi|228932680|ref|ZP_04095554.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826998|gb|EEM72758.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 466

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 127/280 (45%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +      LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  I I    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKICILTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++++   +++   + +     S+K+ G  I  +  +++  RF        
Sbjct: 358 LHNVLDNAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWQIESEKGNGTTVSIKL 457


>gi|254412494|ref|ZP_05026268.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180804|gb|EDX75794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 411

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 137/314 (43%), Gaps = 27/314 (8%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR----AERALTEK 558
           +IT+  +E+ ++       SD + +  I P    + +   + +  + +    A + L + 
Sbjct: 80  VITAHGNEQVAVALMKAGASDYLSQDKISPTSLGRILQNAIRIYQAEQQVELAHQQLRQT 139

Query: 559 NEALRKADEIKN---------------------SFVQHVSYELRSPLTNIIGFTDLLKTS 597
           NE L + ++                         F+   S+ELR+P+  IIGF  +L   
Sbjct: 140 NEQLVRQNQELAQQRQQIQRQNLKLKELSKLKSQFLATTSHELRTPMNVIIGFAQMLLLQ 199

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           + GSL   Q + V+ I  +   LL+L++++LD A ++AG ++L      ++ ++N     
Sbjct: 200 RHGSLTLSQLKMVQCILKNGNHLLSLLSEVLDFAQIEAGALELKAEEFNIDQVVNSTVND 259

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +     +  + + +    K  S + DR RL ++   +L NA+ F+  GS  +     ++ 
Sbjct: 260 VRPLALQKGLDLSIKIQLKNTSVINDRSRLHKVLKHLLMNAVKFTKSGSIWVNVYEVESQ 319

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSIS 775
             I  V++ G  + +     +F+ F         Q  G GLGL++ +S + L  G +++ 
Sbjct: 320 RLIIDVEDTGIGLSQAELDYIFDAFRQVDQTITRQYPGTGLGLAMTKSLVQLMQGKITVE 379

Query: 776 SSDEGVTTINCRIP 789
           S     +     +P
Sbjct: 380 SQVGEGSIFRVELP 393


>gi|168822261|ref|ZP_02834261.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205341298|gb|EDZ28062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 920

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 9/257 (3%)

Query: 539 MLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL+T
Sbjct: 364 LQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT 423

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    LN +Q    +     +  LL ++N++LD + +++G   L+     L  LL++  Q
Sbjct: 424 T---PLNIEQEGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ 480

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   R 
Sbjct: 481 TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVKRH 539

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSIS 775
               IF V ++G  I       +F  F         +G G+GL+I  S   + GG++++ 
Sbjct: 540 EEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLTLK 597

Query: 776 SSDEGVTTINCRIPSKE 792
           S     T ++  +P +E
Sbjct: 598 SVPGVGTCVSLVLPLQE 614


>gi|94264858|ref|ZP_01288633.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454679|gb|EAT04944.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 701

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R +    +    A+  K+ F+ ++S+E+R+P+  ++G T LL  +    LN +Q      
Sbjct: 197 RPMQRVTDQAEAANAAKSEFLANMSHEIRTPMNGVLGMTTLLMDT---GLNREQRHLAGI 253

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I AS   LL ++NDILD + ++AG + L      L +LL+    ++A       + +   
Sbjct: 254 IQASGEDLLRVINDILDFSKIEAGQLDLEVIDFDLQELLDNFAAAMAIPARAKKLALIGE 313

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNG 727
            D     F+  D  R+ QI + ++ NA+ F+ +G   +   A ++          V++ G
Sbjct: 314 LDPATPRFLRGDPGRIRQILTNLVGNAIKFTEQGEVALHFDATEHSPERLTLRCRVRDTG 373

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             IP D    +F  F        R   G GLGL+I +       G +S++S     +   
Sbjct: 374 IGIPADKRDRLFKSFSQADSSTTRQYGGTGLGLAIAKQLAEKMAGAISVTSVSGQGSEFT 433

Query: 786 CR 787
             
Sbjct: 434 VT 435


>gi|312622322|ref|YP_004023935.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202789|gb|ADQ46116.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 467

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 11/259 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN        +  +      +     E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPN-------NSDDEISELISSFNYMTEKLENLEMMRKSFISNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKKDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    ADR  + ++   +L NA+ ++  G  + +
Sbjct: 327 IVEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF           GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPERLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGVTTINCRI 788
            ++ + S +   +     +
Sbjct: 446 QNIWVESEEGVGSKFTFTL 464


>gi|283851328|ref|ZP_06368610.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573278|gb|EFC21256.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 650

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/415 (21%), Positives = 154/415 (37%), Gaps = 58/415 (13%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT------EENRLSPGTHIR 481
           + ++  +   +  +H +EG+     DGRI  +N A   +          E     G  + 
Sbjct: 230 RLSSAQRKYRDIFEHATEGIFQTTFDGRILSANAAMAHMLGYDTPQEFMETVTDVGRQLF 289

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-VLEYSIIPLPNAQTML 540
           +      R        D    +   F   R+  Q    LL+   V +    PL    T+ 
Sbjct: 290 HSPDERRRMLTRLLSEDSVPGLQLRFL--RRDGQTIWVLLNIRLVRDGKGNPLYTEGTLT 347

Query: 541 TFVNVTDSVRAERALTEKNEAL-------------------------RKADEIKNSFVQH 575
              +VT  VRAER L   N  L                         ++ D +K+ F+  
Sbjct: 348 ---DVTARVRAERRLEILNRHLREAVKERTRRLAEKAAELEAANLRLQELDRLKSGFLAT 404

Query: 576 VSYELRSPLTNIIGFTDLLKTS-------------KLGSLNSKQSQYVEYISASSTILLN 622
           VS++LR+PLT+I+GF  L+                +L     + +  +  I +    L  
Sbjct: 405 VSHDLRTPLTSIMGFAKLITRDFTKFFKPFASGHERLTRQADRIAANLGIIESEGERLTR 464

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLGSFV 681
           LVND LDL+ +++G  +   +T+    L+    ++ +        +   +     L    
Sbjct: 465 LVNDFLDLSKIESGRAQWRDATVDTAALILRATEASSADFAAKPEVAFTMDVAPDLPPLR 524

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            D  RL Q+   +L NA  F+ +G  V L+A          V + G  IP +  + +F++
Sbjct: 525 IDPDRLTQVLVNLLGNAAKFTDQGH-VRLRAGVAGPVLRVEVTDTGQGIPRESLEKIFDK 583

Query: 742 FVSNAHRGQ------RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F              R+G GLGL+I    +  + G +   S     +T    +P 
Sbjct: 584 FHQAQAGDTVQEGQRRKGTGLGLAICRQIVGHYQGRIWAESELGRGSTFLMELPL 638



 Score = 41.9 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 67/200 (33%), Gaps = 18/200 (9%)

Query: 249 KKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHT 308
           + R+I   A  + +   VS L  G  ++  +  +       G  ++      ++      
Sbjct: 181 RWRVIGPLARLERYAARVS-LGDGTGETPPLDGLRWEMASLGRTME-EMVNRLSSAQRKY 238

Query: 309 YEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRS-ANKLPE 367
            +I  + T  I     +  +   N +   +   D        +  E +E +     +L  
Sbjct: 239 RDIFEHATEGIFQTTFDGRILSANAAMAHMLGYD--------TPQEFMETVTDVGRQLFH 290

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVT----SNPRGGTIWM---FENLT 420
             + +           S    +  +   +GQT+ V++      + +G  ++      ++T
Sbjct: 291 SPDERRRMLTRLLSEDSVPGLQLRFLRRDGQTIWVLLNIRLVRDGKGNPLYTEGTLTDVT 350

Query: 421 VQVDLETKYNTLVKVQGETI 440
            +V  E +   L +   E +
Sbjct: 351 ARVRAERRLEILNRHLREAV 370


>gi|300771713|ref|ZP_07081588.1| phosphate regulon sensor histidine kinase protein PhoR
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761702|gb|EFK58523.1| phosphate regulon sensor histidine kinase protein PhoR
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 343

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 115/239 (48%), Gaps = 3/239 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +    + + LR  ++ +  F+ ++S+E ++PL  I G+ + L+   +         +++ 
Sbjct: 100 KEKKSEIDKLRSQEKFRREFLSNISHEFKTPLFAIQGYIETLQDGLIEEDPEMAKGFLDK 159

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            S +   L  L++D+ +++ +++G + LN     L++L+ E  +++  K     I I   
Sbjct: 160 ASKNLDRLSYLIHDLDEISKLESGRISLNIEKFDLSELIKETIENLDDKARSQKIDIVFK 219

Query: 673 SDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
              +  +FV ADR+++ Q+ + ++ N++ +   G +  ++        +  V ++G  I 
Sbjct: 220 QKYQNVTFVKADRKKIQQVLTNLIDNSIKYGKTGGSTDIRIFPLFEQVLVEVTDDGQGIE 279

Query: 732 EDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           E     VF RF        R   G GLGL+IV+  +  H  +V++ S++   TT    +
Sbjct: 280 EKNLPRVFERFYRTDKSRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTL 338


>gi|298492023|ref|YP_003722200.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298233941|gb|ADI65077.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 593

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 115/257 (44%), Gaps = 20/257 (7%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    +   +A  +K+ F+ +VS+E+R+PL  +IG   L+          ++ ++V+ 
Sbjct: 324 KELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGLLKLILEGMADG--PEEHEFVQD 381

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
               S  LL ++NDILD A ++AG M +    + L++L N+V+  +  +    N+ +++ 
Sbjct: 382 AHDLSIHLLGILNDILDFAKIEAGKMDIRCGPVRLHELFNDVESFVRPQAEMKNLSLQMQ 441

Query: 673 SD--GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA------------RDNGD 718
                     + + QRLLQ+   ++ NA+ F+ KG  V + A             +  G 
Sbjct: 442 MPTTSDEIIILGNYQRLLQVMLNLVGNAIKFTHKGG-VTISADLVLKKAKGQSQPQHPGI 500

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
               V + G  +  D    +F  F        R   G GLGL+I +  I   GG V   S
Sbjct: 501 VKVRVADTGIGVSLDQQDKLFQLFSQVDGSRTRPHGGTGLGLTISQKLIEAMGGEVHFYS 560

Query: 777 SDEG-VTTINCRIPSKE 792
             E   +T+   +P  +
Sbjct: 561 LGEELGSTVTFTVPLYQ 577


>gi|170700649|ref|ZP_02891646.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170134421|gb|EDT02752.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 730

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 171/392 (43%), Gaps = 22/392 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKT 469
           T+ + +  +  +  E +     + Q    + H    +A+  GP+ RI L+N  F +L   
Sbjct: 187 TLALSQQRSRALSDEIRRREDAEQQRNGVLMHAPLPIALLSGPEHRIVLANHRFSALCGR 246

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            +    P T +     T +         +   +       +R    G   +     L ++
Sbjct: 247 TDIVDQPLTSVLPGGDTPAIVQALETAREQGCSTTIGEHHDRPEPDGGARVYR---LHFN 303

Query: 530 IIPLPNA-QTMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
             PL      +++ V VT+ V A   L   N         LR A++ K+ F+  + +ELR
Sbjct: 304 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 363

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++     +  ++    +  I      ++ L++D+LD++ +  G + L 
Sbjct: 364 NPLTPISLALELIRNRDGQATPNE----IAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 419

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             ++ L D+++   +  +  + +   R+ V +D        D  RL Q+ + +L+NA  +
Sbjct: 420 KESLRLADIVDRAVEVASPLLEQRRHRLHVDADPD-ARCHGDPVRLSQVVANLLTNAAKY 478

Query: 702 SSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
           +  G  + ++A    +G  I  V +NG+ IP D   S+F  F       +    G+G+GL
Sbjct: 479 TMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 538

Query: 759 SIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
           ++V S +NLHGG V   S+  G  +T    +P
Sbjct: 539 ALVRSLVNLHGGTVRADSAGPGCGSTFTIALP 570


>gi|302340016|ref|YP_003805222.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637201|gb|ADK82628.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 632

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 98/499 (19%), Positives = 192/499 (38%), Gaps = 42/499 (8%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLN 370
           +L NL       D ++++ + N++  +    + AF         L      +   P    
Sbjct: 20  VLENLPEICCYLDTDQHIVWANKAARKNLSFE-AFEGEKVFCVNLWRG--QSEICPTCPV 76

Query: 371 WKTWKENIFSVYKSSETHKDTW-HLPNGQTLHVIVTS--NPRGGTIWMFENLTVQVDLET 427
            K+         K+ E  K    H  NG    V+     NP G      E    Q ++  
Sbjct: 77  KKS--------LKTGEIEKAILDHGANG-IWEVVAFPLKNPAGKITGAMEFAYDQTEIRR 127

Query: 428 KYNTLVKVQGETI---DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           K   L +   + +   D           +G I   NPA+       +           + 
Sbjct: 128 KGEELEEQYQKYLMLYDKSPNPYQALDQEGNIIDVNPAWEKTLGYTK---------EEVI 178

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDE--RKSLQGTLELLSDSVLEYSI---IPLPNAQT- 538
                 + + +  + F +   + D E   ++ +  +     + L  ++   I  P+ QT 
Sbjct: 179 GRWFGSFLKEEYIERFRSQFIAADSEYDERTTEYEIRKKDRTFLRIAMEGCIRFPHEQTG 238

Query: 539 ---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                 F ++T     ++AL       ++ +  K+  + +VS+ELR+PL  I+GF  LL+
Sbjct: 239 MTSYCVFKDITTQREMQQALEVGISREKELNNKKSMLMANVSHELRTPLNGILGFVSLLQ 298

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
                 +     +Y+E I  S   LL+++  +L L++++            ++ L+  + 
Sbjct: 299 NRVKDPIE---LEYLEMIRHSGEKLLDIIESLLTLSSIERRKNDDTQRHFNIDHLVRSLV 355

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +      ++ KV+ D +L   + D   +  I +++LSNA  FS  G  +  K +  
Sbjct: 356 SMYESDGRNERLQYKVVVDERLKRLMGDGDAVSHILNQLLSNASKFSESGE-ISCKVSAQ 414

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVS 773
               +  + + G  IP++    VF+RF            G+G+GLSIV+  ++  GG + 
Sbjct: 415 KKQMVIILNDQGIGIPKEEQDKVFDRFYQCEQPITRTYGGIGIGLSIVKEEVDSLGGTIE 474

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T +  ++P  E
Sbjct: 475 LESEYGVGTKVTVKLPWSE 493



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/397 (13%), Positives = 120/397 (30%), Gaps = 34/397 (8%)

Query: 198 LFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSA 257
           + ++L  +  + D    I+WAN + +KN   E    +K    +    + EI        +
Sbjct: 20  VLENLPEICCYLDTDQHIVWANKAARKNLSFEAFEGEKVFCVNLWRGQSEICPTCPVKKS 79

Query: 258 LEKNFCETVSTLEHGNNKSYKIVRVLNS------FGEAGIAIDVSKE----ITVNDQLTH 307
           L+    E    L+HG N  +++V            G    A D ++       + +Q   
Sbjct: 80  LKTGEIEKA-ILDHGANGIWEVVAFPLKNPAGKITGAMEFAYDQTEIRRKGEELEEQYQK 138

Query: 308 TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPE 367
              +           DQ   +   N +    WE  L +            FL+       
Sbjct: 139 YLMLYDKSPNPYQALDQEGNIIDVNPA----WEKTLGYTKEEVIGRWFGSFLKEEYI--- 191

Query: 368 QLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV-----IVTSNPRGGTI--WMFENLT 420
              +++      S Y    T  +     +   L +     I   + + G     +F+++T
Sbjct: 192 -ERFRSQFIAADSEYDERTTEYEI-RKKDRTFLRIAMEGCIRFPHEQTGMTSYCVFKDIT 249

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            Q +++      +  + E  +  S  +A    + R          +        +     
Sbjct: 250 TQREMQQALEVGISREKELNNKKSMLMANVSHELR-----TPLNGILGFVSLLQNRVKDP 304

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             +       ++     D+  +++T    ER+    T    +   L  S++ +  +    
Sbjct: 305 IELEYLEMIRHSGEKLLDIIESLLTLSSIERRKNDDTQRHFNIDHLVRSLVSMYESDGRN 364

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             +        +  L            I N  + + S
Sbjct: 365 ERLQYKVV--VDERLKRLMGDGDAVSHILNQLLSNAS 399



 Score = 42.2 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 66/431 (15%), Positives = 147/431 (34%), Gaps = 50/431 (11%)

Query: 177 ELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
           +  E   K ++L      + +L+D         DQ G+I+  N +++K   T G   ++ 
Sbjct: 121 DQTEIRRKGEELEEQYQKYLMLYDKSPNPYQALDQEGNIIDVNPAWEK---TLGYTKEEV 177

Query: 237 IGE-----SRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-----VRVLNS- 285
           IG       ++ + E  + + I++   E +   T   +   +    +I     +R  +  
Sbjct: 178 IGRWFGSFLKEEYIERFRSQFIAAD-SEYDERTTEYEIRKKDRTFLRIAMEGCIRFPHEQ 236

Query: 286 FGEAGIAI--DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDL 343
            G     +  D++ +  +   L           V I+     R  + +N+  + +  +  
Sbjct: 237 TGMTSYCVFKDITTQREMQQALE----------VGIS-----REKELNNKKSMLMANVSH 281

Query: 344 AFLATNPSNDELLEFLRSANKLPEQLNW----KTWKENIFSVYKSSETHKDTWHLPNGQT 399
                       +  L++  K P +L +    +   E +  + +S  T        N  T
Sbjct: 282 ELRTPLNGILGFVSLLQNRVKDPIELEYLEMIRHSGEKLLDIIESLLTLSSIERRKNDDT 341

Query: 400 LHVIVTSNPRGGTIWMFEN--LTVQVDLETKYNTLVKVQ-------GETIDHLSEGVAVF 450
                  +     + M+E+     ++  +   +  +K            ++ L    + F
Sbjct: 342 QRHFNIDHLVRSLVSMYESDGRNERLQYKVVVDERLKRLMGDGDAVSHILNQLLSNASKF 401

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAI---ITS 506
              G I     A +       N    G           R+Y  E      +  I   ++ 
Sbjct: 402 SESGEISCKVSAQKKQMVIILNDQGIGIPKEEQDKVFDRFYQCEQPITRTYGGIGIGLSI 461

Query: 507 FDDERKSLQGTLELLSD-SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
             +E  SL GT+EL S+  V     + LP ++ +      +++   E A+  +   + + 
Sbjct: 462 VKEEVDSLGGTIELESEYGVGTKVTVKLPWSEGLQIIRQESETEEPEHAMEGRRILIAED 521

Query: 566 DEIKNSFVQHV 576
           + I   F+  +
Sbjct: 522 EMINRLFLSVL 532


>gi|323526066|ref|YP_004228219.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323383068|gb|ADX55159.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 657

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/467 (17%), Positives = 164/467 (35%), Gaps = 39/467 (8%)

Query: 346 LATNPSNDELLEFLRSAN-KLP---------EQLNWKTWKENIFSVYKSSETHKDTWHLP 395
           L+   +  +    LR+   ++P         E    +  +  +  V   S  + D     
Sbjct: 64  LSGPETGLDFFRRLRAEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEA 123

Query: 396 NGQTL-HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
             + L  V +        +          D E  Y  L        + L   V      G
Sbjct: 124 VERVLSQVRLQRASDEALLL--------RDREQHYRNLS-------EALPHLVLTCNAAG 168

Query: 455 RIKLSNPAFRSLWKTEENRLS--------PGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
                +  +       EN                  +  +  +      G       I  
Sbjct: 169 DCDFLSKQWYDYTGLAENSSHGLAWLDAVHPEDREEVRRSWLKAVAGHAGTYRHELRIRR 228

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
            D E +     +    D+    S               + +  R   +     +   +A+
Sbjct: 229 HDGEYRWFDARMVATRDNDGNISKWFGSCTDVHSEREAMQERERLLASEQAARQTAEEAN 288

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K+ F+  +S+ELR+PLT ++    +L+   +  L  +    V  I  +  +   L++D
Sbjct: 289 RAKDRFLAMLSHELRTPLTPVLAGASVLEM--IADLPDQARASVRMIRRNVELEARLIDD 346

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQR 686
           +LDL  V  G ++L+  T+ ++++++ V +   +++      + V  D      +ADR R
Sbjct: 347 LLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQVKQQDVHVHKDATHHYVLADRAR 406

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+   ++ NA  F+  G  + ++   +      SV++ G  I  +    +FN F    
Sbjct: 407 LQQMLWNLIRNAAKFTPDGGHIYVRTRDERMHVQISVEDTGIGIEPEQIGKLFNAFEQGD 466

Query: 747 H--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
                Q  G+GLGL+I ++  ++HGG V+  S       T    +P+
Sbjct: 467 QKMTRQFGGLGLGLAITKALTDVHGGTVTAQSPGAHCGATFTITLPT 513


>gi|209520697|ref|ZP_03269447.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209498859|gb|EDZ98964.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 657

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 174/480 (36%), Gaps = 48/480 (10%)

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSAN-KLP---------EQLNWKTWKENIFSVYKSSE 386
           +L  +D          D     LR+   ++P         E    +  +  +  V   S 
Sbjct: 56  DLLVLDYQLSGPETGLD-FFRRLRAEGVRIPAILVTGFTDESRVIEALRSGVSDVVPKSG 114

Query: 387 THKDTWHLPNGQTL-HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            + D       + L  V +        +          D E  Y TL        + L  
Sbjct: 115 DYLDYLPEAVERVLSQVRLQRASDEALLL--------RDRELHYRTLS-------EALPH 159

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
            V      G     +  +R      E+       +  +          S       A+ +
Sbjct: 160 LVLTCDAAGDCDFLSKQWRDYTGLPEHGSYGLAWLDAVHPDDREQIRRS----WLKAVAS 215

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNEALR 563
              D R+ ++           +  ++ + +A   ++    + TD      A+ E+   L 
Sbjct: 216 RSGDYRQEMRIRRHDGEYRWFDVRVVAMRDADGNVSKWFGSCTDIHSQREAIEERERLLE 275

Query: 564 KA----------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
                       +  K+ F+  +S+ELR+PLT ++    +L+   +  L  +    V  I
Sbjct: 276 SEQAARQAAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEM--IPELPEQARASVRMI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +  +   L++D+LDL  V  G ++L+  T+ ++++++ V +   +++      + V  
Sbjct: 334 RRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQVKQQDVHVEK 393

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
                  +ADR RL Q+   ++ N+  F+  G  + ++   +      SV++ G  I  +
Sbjct: 394 HATHHYVLADRARLQQMLWNLIRNSAKFTPDGGHIYVRTRDERMQVQISVEDTGIGIEPE 453

Query: 734 MCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
               +FN F         Q  G+GLGL+I ++  ++HGG V+  S       T    +P+
Sbjct: 454 QIGKLFNAFEQGDQNMTRQFGGLGLGLAITKALTDVHGGTVTAQSPGPHCGATFTITLPT 513


>gi|330965367|gb|EGH65627.1| sensor histidine kinase/response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 641

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 118/251 (47%), Gaps = 13/251 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R+   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   L++T+++     +Q
Sbjct: 241 EQQRSVAQLIQTREEAERANRAKSDFLAMMSHELRTPMNGVLGMLQLMETTRM---TDEQ 297

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S+Y    + S+  LL ++NDILD + ++   +++      L +L++    +      +  
Sbjct: 298 SEYATLATESTEHLLKVINDILDFSRIERDALQMEGIAFNLAELVSASTHAFNHSALQRK 357

Query: 667 IRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---RDNGDFIF 721
           + +++      +  + + D  R+ QI   ++ NA+ F+ +G  V ++A     ++    F
Sbjct: 358 LLLELHVQPGLEAITVIGDPTRIRQILVNLIGNALKFTEEG-RVCIEADWVMLEDEQLRF 416

Query: 722 S--VKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +  V ++G  I  +  +S+F+ F         +  G GLGL I        GG +   S 
Sbjct: 417 TCKVHDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARKLAERMGGTLCAESV 476

Query: 778 DEGVTTINCRI 788
           +   +    +I
Sbjct: 477 EGAGSAFTLQI 487


>gi|282898666|ref|ZP_06306654.1| Histidine kinase, HAMP region protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196534|gb|EFA71443.1| Histidine kinase, HAMP region protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 644

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 118/244 (48%), Gaps = 7/244 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L    +  + A+ +K+ F+ + S+ELR+PL  II    L++   L     ++ ++++ 
Sbjct: 393 EELEMAWKEAKSANTVKSQFLANTSHELRNPLNIIINCVRLVRDG-LCDDKEEELEFLKK 451

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              ++  LL ++ND+LD++ ++AG + +    + L  LL EV    +  + +  +++K  
Sbjct: 452 ADDTAIHLLGIINDLLDISKIEAGKLSVVMIPLELRQLLLEVINLQSVNVQKKGLQLKCE 511

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGD--FIFSVKNNGSS 729
              ++     DR +L Q+   ++ NA  F+ +GS T+  K  + +     + SV + G  
Sbjct: 512 ISEQVIPIKGDRIKLKQVLINVIGNATKFTEEGSITISTKVIKQHSKLYVVISVVDTGIG 571

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINC 786
           I     + +F  F  V      +  G GLGL+I  + I L GG +++ S      TT+  
Sbjct: 572 IDPQQQQKLFRPFVMVDGTTTRKFEGTGLGLAISRNLIELMGGKITLESLGLNRGTTVKI 631

Query: 787 RIPS 790
            +P 
Sbjct: 632 ILPL 635


>gi|269102515|ref|ZP_06155212.1| probable sensor/response regulator hybrid [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162413|gb|EEZ40909.1| probable sensor/response regulator hybrid [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 638

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 127/258 (49%), Gaps = 13/258 (5%)

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
             + N        RAL  K   L KA ++K+ F+ ++S+E+R+P+  ++GFT  L+  + 
Sbjct: 235 CIYHNDRKLREVNRALINKTHELNKAIKVKSEFMANMSHEIRTPMNGVVGFTQCLEEME- 293

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L+++  +YV+YI  S++ LL+++N+ILD + ++ G ++++ +   L++ ++E+   I 
Sbjct: 294 --LDNESKKYVKYIKDSASGLLSIINEILDFSRLENGNVEVSNNKFNLSEFIDEIGSVIL 351

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
            + +   +      D  L  +++ D  ++ QI   +L NA+ F+ +GS + L   +   D
Sbjct: 352 IQANNKELTFACRIDKDLHETYIGDEGKIRQILLNLLGNAIKFTHEGS-IELAVEKIQDD 410

Query: 719 ------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
                   F V + G  I  +   ++F  +         Q  G GLGL+I      L   
Sbjct: 411 NSQTDCLRFRVIDTGIGISSEKQSAIFEAYQQADGSISRQFGGTGLGLAISSRLCFLLNS 470

Query: 771 HVSISSSDEGVTTINCRI 788
            +++ S++   +     +
Sbjct: 471 ELNVISNESEGSEFYFDL 488


>gi|153955731|ref|YP_001396496.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219856100|ref|YP_002473222.1| hypothetical protein CKR_2757 [Clostridium kluyveri NBRC 12016]
 gi|146348589|gb|EDK35125.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569824|dbj|BAH07808.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 617

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 153/362 (42%), Gaps = 25/362 (6%)

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            +   +GRI  +N +   L   E+        + +       +Y + D   +    I   
Sbjct: 231 IIVHDNGRIIYANQSASRLLGCEDPLKLNDKSLYD-------HYRDEDISSIRKKYINII 283

Query: 508 DDERKSLQGTLELLS-----DSVLEYSIIPLPNAQTMLTFV--NVTDSVRAERALTEKNE 560
           D++   +     +L+      SV   S   + + + ++     ++T   + E       +
Sbjct: 284 DEKLSKIVNEENILNCKGNTISVKNTSSFFIYDGKPVILTFLLDLTSQKQMESLKNTAEK 343

Query: 561 ALRKADEIKN------SFVQHVSYELRSPLTNIIGFTDLL---KTSKLGSLNSKQSQYVE 611
            L+  +E K        F  ++S+E ++P+  I      +             K   Y++
Sbjct: 344 NLKLLNETKEFNTLIMDFFINMSHEFKTPINVIFVAIQTMDIYLNKYDSEDMKKCKSYLK 403

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  +   L+ L+N+I D+  VD+G + LN   + +  ++ ++ QS+A+ +   NI +  
Sbjct: 404 TMKQNCLRLIRLINNITDITRVDSGFISLNKKNMDIVSVVEDITQSVASHIDSKNIELIF 463

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            ++ +      D  ++ +I   +LSNA  +++   T+ +         + +V+++G  IP
Sbjct: 464 DTNTEEKIMAFDPNKMERIMLNLLSNAFKYTNSQGTIYVNVEDRGDTVLITVEDDGDGIP 523

Query: 732 EDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ED  + +F RF         +  G G+GL +V+SF+ +H G + ++S     +  +  +P
Sbjct: 524 EDKLQVIFERFGQANRSLSREHEGSGVGLYLVKSFVTMHNGKIEVTSVQGRGSKFSIELP 583

Query: 790 SK 791
            +
Sbjct: 584 VE 585


>gi|226228272|ref|YP_002762378.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091463|dbj|BAH39908.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 1028

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 163/388 (42%), Gaps = 36/388 (9%)

Query: 428 KYNTLVKVQGETIDHLSE-------GVAVFGPDGRIKLSNPAFRSLWK--------TEEN 472
           ++  L +V   T   L++       G   F    R    +     L+         T E 
Sbjct: 378 EFERLAQVAQRTAQQLADAQSMARLGSWSFDSATRHLQWSAELFQLFGRDSTQWTPTPEL 437

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD----ERKSLQGTLELLSDSVLEY 528
            +    H   +    +   +  +  + ++ ++ + +          +G ++  +D     
Sbjct: 438 VVDDQYHPDEVPVLLAALQHTQETGEPYSLLMRTAERNPAVRWVRAEGRVQRRADGT--- 494

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
                     M T ++VTD++  E AL +  +    A+  K+ F+ ++S+E+R+PLT I+
Sbjct: 495 ------RVGLMGTVMDVTDAIEREEALRQAQQYAEGANRSKSEFLANMSHEIRTPLTAIL 548

Query: 589 GFTDLLKTSKLGSLNSK-QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           G TDLL+   + S   + Q Q +E I  +   LL ++NDILD++ ++AG +++      L
Sbjct: 549 GHTDLLREEAVRSAAPRDQVQGLETIQRAGEHLLTVLNDILDISRIEAGRLEIEPVACDL 608

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
             LL +V+  +  +     + ++      + S   AD  R+ QI   ++ NA+ F++ G 
Sbjct: 609 PALLLDVESLMRARAAAKGLTLETRLRNTVPSRVFADPTRVRQILMNLVGNAVKFTAYGR 668

Query: 707 TVI---LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIV 761
             I   ++ A        +V + G  + E     +F  F+        +  G GLGL+I 
Sbjct: 669 VTIEAGVERAEGQEWLTITVDDTGPGMTEQQESLLFQPFMQADGSVTRRHGGTGLGLAIC 728

Query: 762 ESFINLHGGHVS-ISSSDEGVTTINCRI 788
                L GGHV  + ++    +    R+
Sbjct: 729 RRLATLMGGHVRLVHTAPGRGSRFELRL 756


>gi|298530516|ref|ZP_07017918.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509890|gb|EFI33794.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 546

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 129/295 (43%), Gaps = 2/295 (0%)

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
            DL+  ++   +++   ++   +  S    E   +   N           +   A+R L 
Sbjct: 102 NDLYQELLKVNNEQTNLIREAYKKYSTQAREQQFMEEGNTVLQEMTSLNNELTNAQRELA 161

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
            +   L K +  KN F+   +++LR+PL +I  + +LL+      L+   +  ++ I + 
Sbjct: 162 RQIVRLEKLNSQKNFFLGMAAHDLRNPLGSIKLYAELLQEDMKHQLSETGAGMLDKIQSL 221

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           S  +L +V D+LD+  +D+G + L    +    ++ +    +     E +I +       
Sbjct: 222 SRFMLGMVEDLLDVTKIDSGQINLQLENVRPGRVVQDALDPLRMLAREKDISLNCHVLED 281

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCK 736
           L     D  +  Q+ + +L+NA+ +S  GSTV ++    +G  +  V + G  IP +   
Sbjct: 282 LPQVNLDVAKFTQMVTNLLTNAIKYSPSGSTVDVRLYTRDGYLVLDVSDYGQGIPGEEMD 341

Query: 737 SVFNRFVSNAHR-GQRRGV-GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +F  + + + R  Q  G  GLGL+I    +  H G + + SS    TT    +P
Sbjct: 342 RLFAEYQTTSSRPTQGEGSVGLGLAIARRLVEAHDGTIEVQSSQGAGTTFTITLP 396


>gi|218233945|ref|YP_002365446.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218161902|gb|ACK61894.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 463

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + + ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TPSEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYIKVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSHINISVTEEHKHIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 IAIEDEGEGIPLEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|283850562|ref|ZP_06367850.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574133|gb|EFC22105.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1231

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 15/257 (5%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A R +  K   L  A   K+ F+ ++S+ELR+PL +++     L+ +  G L+  + + 
Sbjct: 535 KARRDVERKAADLETASRYKSEFLANMSHELRTPLNSLLLLARNLRDNGSGRLDPDEVEA 594

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  +   LL L+NDILDL+ V+AG + L+  ++ L D+   +            I +
Sbjct: 595 AGIIYRNGNDLLMLINDILDLSKVEAGKLSLHLESVPLADVAGSIMADFGHVAEGKGISL 654

Query: 670 KVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD------------N 716
                +G   +   DR+RL QI   ++SNAM F+  G  V+     D             
Sbjct: 655 HHEIGEGLPQAIRTDRRRLEQILRNLVSNAMKFTETGGVVLRLHLADAADGRPSSRGAAG 714

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSI 774
               FSV + G  I  D  +++F  F         +  G GLGLSI      L GG V++
Sbjct: 715 DMVAFSVIDTGIGIAADKHQAIFEAFQQVDGTSSRRYGGTGLGLSITRELARLLGGRVTL 774

Query: 775 SSSDEGVTTINCRIPSK 791
           +S     +T    +P +
Sbjct: 775 ASQPGRGSTFTFLVPIE 791


>gi|71281799|ref|YP_269191.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71147539|gb|AAZ28012.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 784

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 135/312 (43%), Gaps = 18/312 (5%)

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
           ++ A  +    + +  D    ++ + +D R +++  +    +            A     
Sbjct: 214 DLEAPLTLSRRQPNFPDELNQLVNALNDMRLAIRHDINRREEE---------KQALRYNR 264

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                   R   +L +  E   +A++ K+ F+  +S+E+R+P+  ++G   LL+ ++   
Sbjct: 265 DQLQQMVERRTMSLQQAKEIAEEANKAKSQFLATMSHEIRTPMNGMLGMIQLLQNNE--- 321

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L   QS  V+ +  S+  LL   + +L  A ++ G    + S   L++LL+ +   +  K
Sbjct: 322 LTDPQSHRVKILHDSTEALLETFDHVLQFAQLEEGGYVCSESFFSLDELLHNLISLMQPK 381

Query: 662 MHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV----ILKAARDNG 717
             E ++++K+ +      +      L QI + +L+NA+ F+ +G  +     L+ +    
Sbjct: 382 ADEKHLQLKLDTPVTGDCYHDAAGSLRQILTNLLANAIKFTDQGEILLRVSHLEQSEHQH 441

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS 775
              FS++++G  I   + + +F RF        RR  G GLGLSI        GG + + 
Sbjct: 442 RLRFSIQDSGIGIEPALQQHIFERFTQADESITRRFGGTGLGLSICRQLSQEMGGQIGVE 501

Query: 776 SSDEGVTTINCR 787
           S+    +T    
Sbjct: 502 STVGQGSTFWVE 513


>gi|146278988|ref|YP_001169147.1| PAS domain-containing protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557229|gb|ABP71842.1| PAS domain containing protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 520

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/484 (18%), Positives = 172/484 (35%), Gaps = 23/484 (4%)

Query: 65  ICDQLSKYHSLLTENNC--LTIVWDGKDETPEIIGQLHQRIDIPQTDTDLLSFENWLKFH 122
           +  +  +    +  +       ++DG+       G        P      L    +L   
Sbjct: 29  LQARSGRRTGGIFSDPQSGTVFLFDGETLLDATPGARAILALSPARGGPWLRLLAYLVPR 88

Query: 123 HYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETT 182
               L      L   G     +A T     + +   + G     R+   D   +E     
Sbjct: 89  FP-DLESRLATL--AGDGRLTLASTGEADPLLLMAEMRGG--VTRLTLDDPTGAERPRLD 143

Query: 183 -LKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESR 241
            L  + L   +   +        ++W      +++WAN +Y           +       
Sbjct: 144 HLAQRALVEELDQLRATVSQAPLMMWRESGRAEVIWANAAYLLEAAKRLDPGEDLSWPLP 203

Query: 242 KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID----VSK 297
           +LF+     +       +            G  + +++V      G    A+     V  
Sbjct: 204 RLFERAATAQGAPGQRQKLE--------TQGAARWFELVGFAEGEGRLLFALPADAAVQA 255

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           E ++ D +    +   +L + +AIFDQ+R L   N + ++L  +    LA  PS    LE
Sbjct: 256 EASLRDFMQTLAKTFAHLPIGLAIFDQHRKLALFNPALLDLTSLPPDMLALQPSLFSFLE 315

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNGQTLHVIVTSNPRGGTIWM 415
            LR    +PE  ++ +W+  I  + K++ +  + +TW LP+GQT  VI   +P G    M
Sbjct: 316 ALRDRQMIPEPKDYPSWRRQILELEKAASSGLYTETWSLPSGQTYRVIGRPHPNGALALM 375

Query: 416 FENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           FE+++ ++    +Y   +++    +D + E +AVF   G + ++N A+ +LW  +     
Sbjct: 376 FEDISTEMSRTRRYRADLELGQAVVDAMDEAIAVFSQAGELVMTNAAYGALWGHDPVETV 435

Query: 476 PGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPN 535
               I  +          S  W      +      R+   G + L    ++     PL  
Sbjct: 436 GSGSIVQLCEQWRARTAPSPLWSEAERFVADL-GSRRPWSGEVRLDDGRLVSCRFSPLTG 494

Query: 536 AQTM 539
             T+
Sbjct: 495 GATL 498


>gi|327540026|gb|EGF26622.1| sensor signal transduction multi-kinase [Rhodopirellula baltica WH47]
          Length = 1976

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             +  L     A  +A++ K+ F+  +S+E+R+P+T I+GFT+LL    +   ++++  ++
Sbjct: 1392 TKEKLQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLLRGVVTD-DAERESHL 1450

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + I ++   LL+L+NDILD++ ++A  ++        + ++ +V  S+ +K  E +I ++
Sbjct: 1451 QTIHSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEKDISLE 1510

Query: 671  VISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVI----LKAARDNGDFIFSVKN 725
            +  + +      +D  RL QI + + SNA+ F+++G   I    + +         +V++
Sbjct: 1511 IQVESEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGGVTISISAIGSGETASKMKIAVQD 1570

Query: 726  NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
            +G  + ++    +F  F        R   G GLGLSI +       G + + S     T
Sbjct: 1571 SGIGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESERGVGT 1629


>gi|301307690|ref|ZP_07213647.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
 gi|300834364|gb|EFK64977.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
          Length = 1369

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 14/272 (5%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTN 586
            Y I  +  A  ++ F+      + E            + DE+K  F  +VS+E R+PLT 
Sbjct: 812  YIIAGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTL 871

Query: 587  IIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+   + L+KT K    + +  Q ++ I  ++  LL LVN +LD   +D     L  ST 
Sbjct: 872  IMTPLEKLMKTEK----DLESQQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTG 927

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             +   + +V  S      +  I     S         D  ++ +I S +LSNA  F+ +G
Sbjct: 928  DIVPFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEG 987

Query: 706  STVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLG 757
             T+ +  +           +  V ++G  IP D   ++F+RF   +   +     G G+G
Sbjct: 988  GTISVTLSLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVSSPDKGNPVVGTGIG 1047

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            L +   F+ +H G +++ S     +T    +P
Sbjct: 1048 LHLCREFVRMHHGTITVKSEPGAGSTFTVTLP 1079


>gi|258592063|emb|CBE68368.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 316

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 130/259 (50%), Gaps = 20/259 (7%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A   L    E   +A   K++F+ ++S+ELR+PL++IIGFT+LL++   G+LN KQ+ +V
Sbjct: 56  ANTELLRGIERAEEATRQKSAFLANISHELRTPLSSIIGFTELLQSGAFGTLNEKQAHFV 115

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
             I  SS  LL L+ND+LDL+ ++AG + +     VL +++     ++  +  + +  I+
Sbjct: 116 GNILLSSRHLLTLLNDLLDLSKIEAGKLIIEPEPFVLQEVIETTVGTLRPQADQKHQNIE 175

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA---------------RD 715
           V  +  +    AD  R  QI   +LSNA+ FS KG  +++ +                R 
Sbjct: 176 VTVEDGISLINADPTRFKQILYNLLSNAIKFSHKGGRILVTSRVVPSVLLTTEHTGPERT 235

Query: 716 NGD--FIFSVKNNGSSIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGH 771
           +G      +V + G  I  +    +F RF           +G GLGL++ +  + LHGG 
Sbjct: 236 SGKKIVEITVADTGIGISAEDLSKLFQRFTQLQAPTVKHYQGTGLGLALTKYLVELHGGS 295

Query: 772 VSISSSDEG-VTTINCRIP 789
           +   S  EG   T   R+P
Sbjct: 296 IHAHSDGEGRGATFAVRLP 314


>gi|228963748|ref|ZP_04124889.1| hypothetical protein bthur0004_6160 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795893|gb|EEM43360.1| hypothetical protein bthur0004_6160 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 464

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 208 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 265

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 266 TPPEQRLRYLSIIKDESDYITNLVQDLFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNA 325

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 326 MYKERYIKVSFSCSPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISITDEHKRIS 384

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 385 ITIEDEGEGIPPEDLPHIFDRFYRVDKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEV 444

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 445 DYGSCFIVSLPS 456


>gi|218283359|ref|ZP_03489393.1| hypothetical protein EUBIFOR_01982 [Eubacterium biforme DSM 3989]
 gi|218215913|gb|EEC89451.1| hypothetical protein EUBIFOR_01982 [Eubacterium biforme DSM 3989]
          Length = 702

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 143/369 (38%), Gaps = 26/369 (7%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           +LE +  +L       ++++   +A+F      K+      +L   +         IR  
Sbjct: 222 ELEKRIESLC-----AVEYIDACIALFDYYLEQKMFAQVKATLRYMDSYMAKHPDEIRLG 276

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
               S  Y           II + + +    +   E                 + +    
Sbjct: 277 LMVESSRYKYGKVICDLDVIILALEKKNAYFERIFE----------------EEQVRRCH 320

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           +        R L    E   KA+++K  F+  +S+++R+P+  IIG   +++    G   
Sbjct: 321 DTERYFEMNRKLQLALENETKANQVKMRFLASMSHDIRTPINGIIGMLQVIQR--CGDDK 378

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +     + +  SST LL+LVNDILD+ T++   + L   +  L+ LL  V+  I  +  
Sbjct: 379 QRIKDAYDKMWISSTHLLSLVNDILDIRTLETDSVVLENKSFKLSQLLGRVQTIIDLQAS 438

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              I + + +  +    +     + ++   +LSNA+ ++     V L        F F V
Sbjct: 439 NYKIELFMKTQIEHDHLMGSPIHIEKVLLNLLSNAIKYNKPNGKVYLSVKEKVDCFEFVV 498

Query: 724 KNNGSSIPEDM-CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++ G  + E+     +F  FV    R    G GLG+SIV+  +    G + + S +   T
Sbjct: 499 EDTGIGMSEEFIQNKLFKPFVQKNTRID--GAGLGMSIVQELVKKMNGSIEVKSKENKGT 556

Query: 783 TINCRIPSK 791
                +P +
Sbjct: 557 LFIVCLPLE 565


>gi|42522900|ref|NP_968280.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39574096|emb|CAE79273.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 865

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 120/606 (19%), Positives = 220/606 (36%), Gaps = 95/606 (15%)

Query: 265 TVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFD- 323
           TV TL     +   I R L             +   + +  +    I  N+   + + D 
Sbjct: 114 TVITLVQDITRQKDIERKLEEAKSLLEERVAERTRQLVESESFLMAIFENMPTMVFVKDA 173

Query: 324 QNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKEN-IFSVY 382
           ++      N++   L  I  + L      D   +         EQ ++ T K+  +    
Sbjct: 174 RDLRFVRFNKAGENLLGIPRSQLIGKNDYDLFPK---------EQADFFTTKDRDVLKES 224

Query: 383 KSSETHKDTWHLPNG-QTLHVIVTS------NPRGGTIWMFENLTVQVDLETKYNTLVK- 434
           K  +  ++  +   G + LH            P+   + + E++T   + E +   LVK 
Sbjct: 225 KIVDIPEEQINTARGVRYLHTRKIPVFDKEGRPQ-YLLGVSEDITELKEAEKQRAVLVKE 283

Query: 435 ------------------------VQGETIDHLSEGVA--------------VFGPDG-R 455
                                    Q   +D++ +                 +   +G  
Sbjct: 284 QIARSSAELRAQQMGFLSDLTFAMTQSFDLDNILKAFTEKSIPTLADICIVDLMDEEGLE 343

Query: 456 IKLSNPAFRS-------LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
           I  +  A ++           E   L             SR     +G DL   + ++F 
Sbjct: 344 ISHTQVAAKTDEDRQFIQSWRERFPLRWDAPYGAAEVIRSRKTEIINGVDLDQFLKSTFG 403

Query: 509 DERKSLQGTLE---LLSDSVLEYSIIPLPNAQTMLT----FVNVTDSVRAE---RALTEK 558
            E    Q  +     ++  +L     PL     + T      +  D   AE   R L   
Sbjct: 404 PEAAMTQRPIHAEAFMTVPILLRDEKPLGTISLITTSPGRHFSPLDQSMAEEVGRRLAVL 463

Query: 559 NEA------LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
            E        ++A   K +F+ +VS+E+R+PL  ++GF ++LK  +  SL  +Q + VE 
Sbjct: 464 IENSRLYYRAQEASRAKTAFLANVSHEIRTPLGAMLGFAEILKEDE--SLREEQKEAVET 521

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           +  +   LL++V++ILD++ V++  +++      L DLL++V   +  +  E  I +++ 
Sbjct: 522 VLRNGQQLLHIVDEILDISKVESERIQIESIVFDLPDLLHDVIHLLRGRAEEKGIELRLR 581

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVKN 725
                    +D  RL QI   ++ NA+ F+  G  V ++A   NG          F V +
Sbjct: 582 LGPLPKKIQSDPTRLRQILINVIGNAIKFTDSG-FVEMEARSHNGKRRDGRQRIEFLVTD 640

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSI-SSSDEGVT 782
            G  I  +   ++F  F        RR  G GLGL +      L GG V + +SS    +
Sbjct: 641 TGIGISSEQRNNLFQPFSQADSSTTRRFGGTGLGLFLSRKLARLLGGDVILNTSSAGIGS 700

Query: 783 TINCRI 788
           +    I
Sbjct: 701 SFLISI 706



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 102/309 (33%), Gaps = 35/309 (11%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +++   N        I  +  V I   D N  +   N  F+E+       L     N + 
Sbjct: 4   TEQEQNNQLWRRYKTIFESKLVGILSTDMNGQILDANDCFLEMVGYSREDLNEGRLNWKT 63

Query: 356 L---EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT 412
           L    +L  + ++ E L  K        V++    HK    +P    + + +T    G  
Sbjct: 64  LTHPNYLEQSRQVAEILKTK----GSVPVFEKEYIHKKGHLVP----VRLGLTMFEDGTV 115

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGE------------------TIDHLSEGVAVFG-PD 453
           I + +++T Q D+E K      +  E                    +++   V V    D
Sbjct: 116 ITLVQDITRQKDIERKLEEAKSLLEERVAERTRQLVESESFLMAIFENMPTMVFVKDARD 175

Query: 454 GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKS 513
            R    N A  +L     ++L             + ++   D   L  + I    +E+ +
Sbjct: 176 LRFVRFNKAGENLLGIPRSQLIGKNDYDLFPKEQADFFTTKDRDVLKESKIVDIPEEQIN 235

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE--RALTEKNEALRKADEIKNS 571
               +  L    +            +    ++T+   AE  RA+  K +  R + E++  
Sbjct: 236 TARGVRYLHTRKIPVFDKEGRPQYLLGVSEDITELKEAEKQRAVLVKEQIARSSAELRAQ 295

Query: 572 ---FVQHVS 577
              F+  ++
Sbjct: 296 QMGFLSDLT 304


>gi|298481754|ref|ZP_06999944.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D22]
 gi|298271976|gb|EFI13547.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D22]
          Length = 754

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 133/270 (49%), Gaps = 10/270 (3%)

Query: 526 LEYSIIPLPNAQ--TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
             Y+   LP  +  T    +N+ D    E  L      L +  E+K SF+ ++S+E+R+P
Sbjct: 488 FRYTTKQLPGGEYKTAGLLLNIQDIKDREEELEAAR-LLAEKAELKQSFLANMSHEIRTP 546

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L +I+GF ++L     G  + ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++ 
Sbjct: 547 LNSIVGFANILALED-GLSSVEREEYISTINKNSELLLKLINDILELSRIESGYMSFSFK 605

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
              + +L++++  +    +  + +      D        DR+RL+Q+ +  L+NA  F+ 
Sbjct: 606 RCKVRELIDDIYMTHQVLIAPH-LEFLKEVDDTPLEINVDRERLIQVLTNFLNNAGKFTE 664

Query: 704 KGSTVILKAAR--DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIV 761
            G  + L  +   D G     V++ G  IP +  + +F+RF       Q  G GLGLSI 
Sbjct: 665 TG-YIKLGYSYLPDEGKVQIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSIC 721

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           +  I   GG + + S     +     +P +
Sbjct: 722 QVIIEKLGGKIELKSEVGKGSRFTVILPCR 751


>gi|262199366|ref|YP_003270575.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
            14365]
 gi|262082713|gb|ACY18682.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
            14365]
          Length = 1885

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 116/247 (46%), Gaps = 9/247 (3%)

Query: 547  DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
            ++ R    L    E   +A+  K+ F+  +++ELR+P+  IIG  +LL  ++    + +Q
Sbjct: 1472 ENARLLTHLKLSKEEAERANRAKSDFLASINHELRTPMNGIIGMIELLFDTE---PSDEQ 1528

Query: 607  SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +Y+     ++  L+ ++ D LD++ ++AG ++L      L+D +  +   +  +     
Sbjct: 1529 REYLGMARTAADQLMRIIRDTLDVSRIEAGKLELEPIEFELDDCMATLASMLPAQTQSEG 1588

Query: 667  IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK---AARDNGDFI-- 720
              +      ++      DR RLLQ+   +  NA+ F+     V L    A+R  G  +  
Sbjct: 1589 PALSFDVAPEVPRKLRGDRDRLLQVLINLFGNAIRFTPAEGLVALHVDLASRSAGAVVLR 1648

Query: 721  FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            F+V+++G  I  +  +++F  F        + GVGLGL+IV S + L GG +S+ S    
Sbjct: 1649 FAVRDSGEGIAPEDQEAIFQPFTQARSANSKGGVGLGLAIVSSLVELMGGDISVESELGE 1708

Query: 781  VTTINCR 787
                   
Sbjct: 1709 GACFTFT 1715


>gi|238793685|ref|ZP_04637307.1| Aerobic respiration control sensor protein arcB [Yersinia
           intermedia ATCC 29909]
 gi|238726926|gb|EEQ18458.1| Aerobic respiration control sensor protein arcB [Yersinia
           intermedia ATCC 29909]
          Length = 778

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 147/371 (39%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V     D      N A   L    E +L   T   
Sbjct: 143 REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      
Sbjct: 313 LDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    + D  RL QI   ++ NA+ FS +G  V+      +   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFSQQGKIVVRVRREGSDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +       G R   G G+GL++ +      GG +++ S+
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGEGSCFILTI 503



 Score = 41.5 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++  +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|222053593|ref|YP_002535955.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221562882|gb|ACM18854.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 350

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 149/355 (41%), Gaps = 25/355 (7%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
           V    I   S G+     DGRI L N    S+  T    ++ G  +  +      Y   S
Sbjct: 17  VAESIIASQSTGIIYLDGDGRIALINARAESMLHTSAGDVT-GKRVDMLPLRTPVYRVLS 75

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
           +        +        S+ G +  L+    E  I    ++  +   ++VT+  + +R 
Sbjct: 76  ENCREMPVEV--------SVNGAV--LTARSAEVRIPSGESSGEIYELLDVTEEKKEKRH 125

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
                         +   V  ++++L+SPLT ++G+   L+      ++      ++ + 
Sbjct: 126 --------------REEIVAMMTHDLKSPLTVLMGYVQALRNEDGTKVHVSLLPCLDEMD 171

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S+  LL ++ D+LD   ++ G+++   S   L+ +L      +A +     +R+    +
Sbjct: 172 RSALKLLAMIEDVLDAYRLEVGLLQTTCSWCDLSAILEACCHDMAREASSRGVRLNHNIE 231

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
             + +   D  +L ++F+ I+ NA+ F+ +   V + A   +     +V + G  IP+  
Sbjct: 232 SGIPAMNVDGNQLSRVFANIIGNAVKFTPRKGQVTVNAWLGDEKLHVAVTDTGIGIPQKD 291

Query: 735 CKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +FN++  +      RG GLGL+I ++ +  HGG +++ S+    +     IP
Sbjct: 292 LPRIFNKYFRSKGANGFRGTGLGLTISKAIVEAHGGAIAVESAVGEGSCFTIVIP 346


>gi|83312294|ref|YP_422558.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947135|dbj|BAE51999.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 601

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 10/249 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            ++ R    L         A+  K+ F+  +S+ELR+P+ +I+GF  L   + +    ++
Sbjct: 196 FENERLIGDLRRAGAEAEAANRAKSDFLAVMSHELRTPIASILGFVQL---AGMAPTLAR 252

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
               +  +  +   LL +V+DILD++ ++AG   L+ +   L+++L  V+        E 
Sbjct: 253 ARAILPKVGRAGRHLLAIVDDILDISRIEAGKYALDLAPFSLDEMLGHVEDLTRPLAEEK 312

Query: 666 NIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFI 720
            + + +  SD      V D  RL QI   ++ NA+ F+S+G+  V ++    +       
Sbjct: 313 GVELSLQHSDDAPALLVGDALRLGQILINLVGNAVKFTSRGAVHVTVRTMPIDEISLLLE 372

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD 778
             V ++G  IP D  +++F  F        RR  G GLGLS+  + + + GG +++ S  
Sbjct: 373 CEVADSGIGIPADRLEAIFEPFTQGDGSTTRRYGGTGLGLSVCRTLVEMMGGEITVESQP 432

Query: 779 EGVTTINCR 787
              +     
Sbjct: 433 GRGSVFRFS 441


>gi|90425281|ref|YP_533651.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90107295|gb|ABD89332.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 864

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 147/355 (41%), Gaps = 21/355 (5%)

Query: 446 GVAVFGPDGRIKLSNPAFRSL----WKTEENRLSPGTHIRNIAATCSR-YYNESDGWDLF 500
            V++   DG +    PA   +        +  L+ G  +R    T  +   + +     +
Sbjct: 216 AVSLVRDDGLLLARYPASDRIGKISSGAGQRALAAGGSLREAGDTDQQMRLHAARMLPNY 275

Query: 501 AAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNE 560
             +I     E  +LQ      S + L  ++  L     ++  V +      +  L    +
Sbjct: 276 PVLIAVSQTEVSALQS---WRSIAALIVAMSSLTAIVLLIVTVVIARWWIRQDQLISDAQ 332

Query: 561 ALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTIL 620
           +    +  K++FV  +S+E+R+P+  ++G    L  S+   L+++Q + V  I  +   L
Sbjct: 333 SA---NAAKSTFVAMMSHEIRTPMNAVLGLATNLLDSR---LDAEQRRSVVGIHDAGDAL 386

Query: 621 LNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-S 679
           L+++NDILD + ++AG + L         L+      +  +     +R++   D  L  +
Sbjct: 387 LDILNDILDFSKLEAGRLSLESIAFSPEALVESALSIVLPRATARGLRVRNQIDPSLPIA 446

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMC 735
              D  R+ Q+   ++SNA+ F+  G  V+    R   +      + + + G  I E   
Sbjct: 447 LQGDAGRIRQVLLNLMSNAVKFTPSGEVVVTTKCRWADESFAALEWIIADTGIGIAEQDI 506

Query: 736 KSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            S+F  F        RR  G GLGL+I +  +   GG + +SS+    TT    +
Sbjct: 507 GSLFTDFAQADSSISRRFGGSGLGLAICKRLVEQMGGEIQVSSAYGKGTTFRFSL 561


>gi|332526424|ref|ZP_08402545.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332110555|gb|EGJ10878.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 679

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 109/645 (16%), Positives = 231/645 (35%), Gaps = 61/645 (9%)

Query: 180 ETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGE 239
              ++ ++L        ++       V   D+   + W N ++++ T   G   ++ +G 
Sbjct: 23  RAHVRWRRLVADNERLALVARQTSNAVVITDRQRRVTWVNPAFEQLT---GYPLEEMVGH 79

Query: 240 SRKLF------KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA---- 289
           +           +     M  +    + +   +      + + Y +   +    +A    
Sbjct: 80  NPGRMLQCPGSDQGTVLAMREALGAGQRYVGEILNRAR-DGRLYWVDLRIEPLLDAHGWL 138

Query: 290 ----GIAIDVSKEITVNDQLTHTYEILHNLT----VAIAIFD-QNRYLQFHNRSFVELWE 340
                I  DV+        L  + + L +      V    FD  +  L        ++W 
Sbjct: 139 SGFMAIQTDVTARRHSEGALRASQDFLEHTGRIGGVGGWSFDPASGRLNLT----RQVWR 194

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL 400
           +       NP+  + L  +   ++   ++      + + +  +     +        + L
Sbjct: 195 LLGETPRENPTIADCLRRVGPQSRAEVEM---LIADGLSARDRWDVDLQVITGAGQERWL 251

Query: 401 HVIVTSNPRG----GTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRI 456
            VI  S          I   ++++V+  ++ +      +    I+ + E   ++ PD R+
Sbjct: 252 RVIAESELDATGELRLIGTAQDVSVRRAVKAEALHNAALLRNAIETIDEAFVLYDPDDRL 311

Query: 457 KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQG 516
            + N  +R+L+      L  G    +I     R              +       +S  G
Sbjct: 312 VICNDKYRALFARPGMELLTGVRYEDILRAGVRGGQYPAAQGREEEWVAQRLQVHRSGAG 371

Query: 517 TL--ELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
                L    VL      +P+   +   V++TD VRA        EA  +AD  K+ F+ 
Sbjct: 372 PFVQRLDDGRVLRVVDRVMPDGHVVGFRVDITDLVRA-------TEAAEQADRSKSEFIG 424

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
            +S+ELR+PL +I+GF+DL       + + +       I    T +L LVN +LD++ +D
Sbjct: 425 TISHELRTPLQSILGFSDL--GRHFAAGHPQFEPMFRDIHDGGTRMLRLVNGLLDISKID 482

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
             +  L      L +L   V + +  +     + I +       +   D  R+ Q+   +
Sbjct: 483 GTLGSLVRRPADLGELALAVVRELRPQAGARRVEIVLPEAAAALTAEVDAFRMQQVLRNV 542

Query: 695 LSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--- 750
           L+NA+ F+ +GS++ + A           + + G  IPE   +++F  FV ++       
Sbjct: 543 LANAIRFAPEGSSIEIAATDLGAAGRRLEILDRGPGIPEAEIEAIFKPFVQSSRTKSGAG 602

Query: 751 -----RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                         I    +  HGG ++ ++ D G       +P+
Sbjct: 603 GTGLGLA-------ICRRIMGAHGGRITAANRDGGGARFTIELPA 640



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 77/244 (31%), Gaps = 30/244 (12%)

Query: 143 LVAETQNDCAIKI-EGRVSGSCAFLRILS-----------LDGIYSELAETTLKCKKLSN 190
           L A  + D  +++  G  +G   +LR+++           L G   +++       +  +
Sbjct: 229 LSARDRWDVDLQVITG--AGQERWLRVIAESELDATGELRLIGTAQDVSVRRAVKAEALH 286

Query: 191 HISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK 250
           + ++ +   +++D      D    ++  N  Y+      G+     +     L       
Sbjct: 287 NAALLRNAIETIDEAFVLYDPDDRLVICNDKYRALFARPGMELLTGVRYEDILRAGVRGG 346

Query: 251 RMISSSALEKNFCETVSTLEH----------GNNKSYKIVRVLNSFGE-AGIAIDVSKEI 299
           +  ++   E+ +      +             + +  ++V  +   G   G  +D++  +
Sbjct: 347 QYPAAQGREEEWVAQRLQVHRSGAGPFVQRLDDGRVLRVVDRVMPDGHVVGFRVDITDLV 406

Query: 300 TVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFL 359
              +          + +  I             +S +   ++   F A +P  + +   +
Sbjct: 407 RATEAAEQAD---RSKSEFIGTISHELRTPL--QSILGFSDLGRHFAAGHPQFEPMFRDI 461

Query: 360 RSAN 363
               
Sbjct: 462 HDGG 465


>gi|326424155|ref|NP_761988.2| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
 gi|319999539|gb|AAO11515.2| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
          Length = 1254

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 156/369 (42%), Gaps = 21/369 (5%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
                      I+ +   + +      + L+N          E   +         A+ S
Sbjct: 537 IEQSRAFLQSIIETIPAKIWIHNSKHELILTN--------CVEKIDNNCVGCDMSVASTS 588

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           + + E   W     ++ + +     +Q      +     YS IP+   +     + + + 
Sbjct: 589 QLFVED--WHEIDRVLETGEKLSSYVQAGCSFGTQKHYNYSRIPVKINRIERCVLTIAND 646

Query: 549 VRAERA----LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           +  ERA    L E N    KA + +  F+  +S+ELR+P+  ++G  +++ +    + + 
Sbjct: 647 ITEERANQQLLIEANTKAEKAVQARQMFLATMSHELRTPIAGMMGLLEMVTSK---TEDK 703

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +    ++ ISAS+  L  LVNDILD + +++  + +      +   L E  +        
Sbjct: 704 ESLFLLDQISASAKNLNFLVNDILDFSKLESNQVVICNEETSILTALCESLRGHYVAARN 763

Query: 665 NNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
             +  ++      + +   D  RL QI + +L+NA+ F+ KG TV ++ + ++      V
Sbjct: 764 KGLNFELDWPANDIKTINIDFLRLNQIINNLLTNAIKFTHKG-TVRVQVSLESERIQIIV 822

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + G  + ++  ++VF  FV   +    +  G GLGLSIV   ++L GG + I+S+    
Sbjct: 823 ADTGVGMTQEQKENVFLPFVQADNSITRKYGGTGLGLSIVHDLVSLMGGTIFINSTLGLG 882

Query: 782 TTINCRIPS 790
           T I   +P+
Sbjct: 883 TEITVSMPT 891


>gi|298528942|ref|ZP_07016345.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510378|gb|EFI34281.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 468

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 168/411 (40%), Gaps = 40/411 (9%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
              +N  +Q   E    T  + +    D    G  VF  +G I+  N     +   ++  
Sbjct: 53  LSIQNEELQAKQEQLERTSNEYRR-LFDFAPVGFFVFDENGIIEDVNRYGAEMLGMDQRT 111

Query: 474 LSPGTHIRNIAATCSRYYNESDG------------------------WDLFAAIITSFDD 509
           L     +  +  T  R +++                           W    +I     D
Sbjct: 112 LHGKPFMLYLDTTYQRAFSDHRRRVFSKKPVAEDVSLKLKVQNSRGIWARIKSIAVEHGD 171

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV-----TDSVRAERALTEKNEALRK 564
           ++     T        +EYS   L   +T+    N+         + E+ L E  +A   
Sbjct: 172 QKALRCFTAMQDITRQVEYSEKLLEMNRTLEGTNNMLRQEIEARKKVEQELIESRDAAEA 231

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A + K+ F+ ++S+E+R+PL  I G   L++ +   SL+ +Q + ++   AS   +L ++
Sbjct: 232 ATKAKSGFLANMSHEIRTPLNGIFGMLQLMEDT---SLDEEQQELLQTAKASGRGILTIL 288

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVAD 683
           +DIL+ A +D    +L      L  ++ +  QS+     +  + IK+     L      D
Sbjct: 289 SDILEFAGLDQVEPRLENRPFDLRSVVQQTIQSLEASARQKGLGIKLSIAADLPGEVCGD 348

Query: 684 RQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
           + R+ QI   +LSNA+ F+  G       +L++  D+    F++ ++G  I +D+   VF
Sbjct: 349 QARVRQILFNMLSNAVKFTQDGEIHLDVSLLRSYEDSILAGFALSDSGPGISDDLIFQVF 408

Query: 740 NRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
             F    +    +  G+GLGLSI  + + L GG +++ + +   +T    +
Sbjct: 409 QPFSQADNSFTRRHGGLGLGLSIARNLVKLMGGTIALDTEEGRGSTFYFTL 459



 Score = 44.5 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +K+  +         +     V   +FD+N  ++  NR   E+  +D   L   P     
Sbjct: 62  AKQEQLERTSNEYRRLFDFAPVGFFVFDENGIIEDVNRYGAEMLGMDQRTLHGKP----F 117

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS----NPRGG 411
           + +L +      Q  +   +  +FS    +E       + N + +   + S    +    
Sbjct: 118 MLYLDTTY----QRAFSDHRRRVFSKKPVAEDVSLKLKVQNSRGIWARIKSIAVEHGDQK 173

Query: 412 TIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGV-AVFGPDGRIKLSNPAFRSLW 467
            +  F   +++T QV+   K   + +    T + L + + A    +  +  S  A  +  
Sbjct: 174 ALRCFTAMQDITRQVEYSEKLLEMNRTLEGTNNMLRQEIEARKKVEQELIESRDAAEAAT 233

Query: 468 KTEENRLSPGTH-IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVL 526
           K +   L+  +H IR             +   L           + S +G L +LSD +L
Sbjct: 234 KAKSGFLANMSHEIRTPLNGIFGMLQLMEDTSLDEEQQELLQTAKASGRGILTILSD-IL 292

Query: 527 EYS 529
           E++
Sbjct: 293 EFA 295


>gi|85703815|ref|ZP_01034918.1| signal transduction histidine kinase [Roseovarius sp. 217]
 gi|85671135|gb|EAQ25993.1| signal transduction histidine kinase [Roseovarius sp. 217]
          Length = 735

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/529 (16%), Positives = 197/529 (37%), Gaps = 40/529 (7%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           A             +     +  +    A+FD +  L  HN  F     +    +   P 
Sbjct: 73  AQLAQAIRQAERARSDLANAIETIQEGFALFDSDGRLVLHNSRFG--MYMPDLVVELRPG 130

Query: 352 NDELLEFLRSANK-----LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTS 406
             E  +++R A++     LP+  +   W      +++         +L     + V    
Sbjct: 131 L-EFADYVRHASQSRFLELPDMQSRGDWTARRMQLHQEKHVM-FNLNLTGDCWVQVSEHR 188

Query: 407 NPRGGTIWMFENLTVQVDLETKYN-----TLVKVQGETIDHLSEGVAVFGPDGRIKLSNP 461
              G T+ +  ++T  + LE +          ++   T++H+ +GV +F   G++   N 
Sbjct: 189 TRDGQTVILQTDITDIIRLERRERGKLLDDQAQLIRATLEHIDQGVCIFDRGGQLLGWNQ 248

Query: 462 AFRSLWKTEENRLSPGTHIRNIAATCSRYYN-ESDGWDLFAAIITSFDDERKSLQGTLEL 520
              S+     +R   G     I       +  E        A   +  D R  L+  +  
Sbjct: 249 NAGSMLSIPLSRFRVGIEFDVILRRIGSDFEIEGGLTARDIAAWVAAQDRRAPLRFYMRS 308

Query: 521 LSDSVLEYSIIPLPNAQTMLTFVN-----------VTDSVRAER-------ALTEKNEAL 562
                L+     +P+   +++F +              + R E+        L +     
Sbjct: 309 GEHKTLDVFARQMPDRGFVISFSDVTAERAAARALAHANERLEQRVRDRTLELEDALAKA 368

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            +A+  K+ FV   S++LR PL+    +   L        +      ++    + T + +
Sbjct: 369 ERANASKSRFVAAASHDLRQPLSAARLYLASLHEELA---SDDHRVLMDKAQRALTSVED 425

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           +++ +LD++ +++G ++++ + + L  +++++    A       + ++ +    L    +
Sbjct: 426 IIDALLDISRLESGHVEVDVTHVPLRRIMDQLNDEFAPIAALKGLDLRYVPCDAL--VES 483

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D   L +I   +++NA+ ++  G  V++ A R   +    V++ G  I       +F  F
Sbjct: 484 DASYLRRILQNLIANAIRYTPSG-KVLVGARRQGRNLRLEVRDTGPGIALADQDRIFQEF 542

Query: 743 VS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +AH     G+GLGL+IV+    L G  + + S        +  +P 
Sbjct: 543 HRLDAHVSAAEGMGLGLAIVDRACALLGHPLELRSDLGCGACFSVTVPL 591



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/396 (12%), Positives = 124/396 (31%), Gaps = 35/396 (8%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           +LD +    A+     ++     S      +++       D  G ++  N  +       
Sbjct: 64  ALDLLNDSNAQLAQAIRQAERARSDLANAIETIQEGFALFDSDGRLVLHNSRFGMYMPDL 123

Query: 230 GIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKI-------VR 281
            +  +  +          + +   +       ++      L    +  + +       V+
Sbjct: 124 VVELRPGLEFADYVRHASQSRFLELPDMQSRGDWTARRMQLHQEKHVMFNLNLTGDCWVQ 183

Query: 282 VLNSFGEAGIAI----DVSKEITVND---------QLTHTYEILHNLTVAIAIFDQNRYL 328
           V       G  +    D++  I +           Q       L ++   + IFD+   L
Sbjct: 184 VSEHRTRDGQTVILQTDITDIIRLERRERGKLLDDQAQLIRATLEHIDQGVCIFDRGGQL 243

Query: 329 QFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH 388
              N++   +  I L+        D +L  + S  ++   L   T ++    V       
Sbjct: 244 LGWNQNAGSMLSIPLSRFRVGIEFDVILRRIGSDFEIEGGL---TARDIAAWVAAQDRRA 300

Query: 389 KDTWHLPNG--QTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG 446
              +++ +G  +TL V     P  G +  F ++T +           +   +        
Sbjct: 301 PLRFYMRSGEHKTLDVFARQMPDRGFVISFSDVTAERAAARALAHANERLEQR------- 353

Query: 447 VAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
             V      ++ +         ++   ++  +H      + +R Y  S   +L +     
Sbjct: 354 --VRDRTLELEDALAKAERANASKSRFVAAASHDLRQPLSAARLYLASLHEELASDDHRV 411

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTF 542
             D+ +    ++E + D++L+ S +   + +  +T 
Sbjct: 412 LMDKAQRALTSVEDIIDALLDISRLESGHVEVDVTH 447


>gi|330447436|ref|ZP_08311085.1| aerobic respiration control sensor protein arcB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491627|dbj|GAA05582.1| aerobic respiration control sensor protein arcB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 789

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 147/379 (38%), Gaps = 17/379 (4%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
             +  + + +        +    +D   + +       +    N A   L    E  L  
Sbjct: 138 NEVYQRENAQLAVAEQSALLKSFLDASPDLIYYRNEKNQFSGCNRAMSELLGKTEKELVG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T         ++   ++D  +LF       D++          L     E   +P  + 
Sbjct: 198 LTPWDVYPEEVAKKIIKTD-EELFHENNAMTDEQWLVYPNGKRAL----FELRKVPFYSR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 +        ER   +  +AL KA   K SF+  +S+ELR+PL  I+G + +L  
Sbjct: 253 NGRRLGLMGFGRDITER--KKYEDALEKASSDKTSFISTISHELRTPLNGIVGLSRMLLD 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L  +Q  Y+  +  S+  L N+ NDI+DL   D   ++L    +  ++ ++E+  
Sbjct: 311 TE---LTDEQRGYLRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFHEFVDEMGN 367

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVIL---KA 712
                  +  +R  +     L  +   D  RL Q+   ++ NA  F+ +G  ++    + 
Sbjct: 368 ISQLMAEQKGLRFDLECLTDLPKNIEVDSTRLRQVLWNLIGNATKFTKQGGVILSVSSEI 427

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVESFINLHG 769
              + D +F V+++G  IP+    ++F  +             G G+GL++    + L G
Sbjct: 428 HEHDADIVFEVEDSGVGIPKSEIDNIFAMYYQVKQGDDNIHAVGTGIGLAVSRQLVQLMG 487

Query: 770 GHVSISSSDEGVTTINCRI 788
           G +++ S     +T   +I
Sbjct: 488 GDITVDSEVGEGSTFRVKI 506



 Score = 43.4 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 78/204 (38%), Gaps = 23/204 (11%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQ-----NDCAIKIEGRVSGSCAFLRILSLDGIY 175
                +LSK   KL +E +S DL    Q     +   ++IE R     A  R  ++  + 
Sbjct: 81  EESRQRLSKLVTKL-EEMRSRDLELNQQLQDNISQLNLEIEERKKAEEA--REEAMQDLE 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
           +E+ +       ++   ++ K   D+   L+++R++       N +    +E  G   ++
Sbjct: 138 NEVYQRENAQLAVAEQSALLKSFLDASPDLIYYRNEKNQFSGCNRA---MSELLGKTEKE 194

Query: 236 AIGESR-KLFKEEIKKRMISSSAL-----EKNFCETVSTLEHGNNKSYKIVRVL------ 283
            +G +   ++ EE+ K++I +             E      +G    +++ +V       
Sbjct: 195 LVGLTPWDVYPEEVAKKIIKTDEELFHENNAMTDEQWLVYPNGKRALFELRKVPFYSRNG 254

Query: 284 NSFGEAGIAIDVSKEITVNDQLTH 307
              G  G   D+++     D L  
Sbjct: 255 RRLGLMGFGRDITERKKYEDALEK 278


>gi|311694504|gb|ADP97377.1| sensory box histidine kinase/response regulator [marine bacterium
           HP15]
          Length = 647

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 118/254 (46%), Gaps = 14/254 (5%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             +   A     E    A++ K+ F+  +S+ELR+PL  ++G  DL++      L  +Q 
Sbjct: 251 RDQTLAASEGAREKAEMANQAKSEFLATMSHELRTPLNGVLGMVDLIQEE---PLTQRQR 307

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +Y+     S+  LL ++ DILD + +D+G +KL      L +L++    +      +  +
Sbjct: 308 EYLNTARQSTEDLLTVIGDILDYSKMDSGTLKLESQEFNLRELISNCTATYRHLAEQQGL 367

Query: 668 RIKVIS---DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIF 721
            + +            + D  RL QI + +  NA+ F+  G  + ++A   A ++   I 
Sbjct: 368 ALNLKFFGDWPDNPVVIGDPARLRQILAGLADNAIKFTGDG-FINIQAGFFALEDNCIIL 426

Query: 722 --SVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             SV ++GS IP +    +FN F      +     G GLGLS+V+  + L GGH+ + + 
Sbjct: 427 NCSVSDSGSGIPTERLHDIFNSFEQVDGGNSRLYGGTGLGLSLVQRLVELMGGHIQVETD 486

Query: 778 DEGVTTINCRIPSK 791
               ++    +P +
Sbjct: 487 LGKGSSFRFELPFE 500


>gi|238918557|ref|YP_002932071.1| aerobic respiration control sensor protein ArcB [Edwardsiella
           ictaluri 93-146]
 gi|238868125|gb|ACR67836.1| aerobic respiration control sensor protein ArcB [Edwardsiella
           ictaluri 93-146]
          Length = 778

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 144/372 (38%), Gaps = 18/372 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            QV+LE +      +    +D   + V     +G     N A   L    E +L   T  
Sbjct: 146 AQVELEQQ----SALLRSFLDSSPDLVYYRNENGEFSGCNRAMELLTGKSEKQLIGLTPR 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D       +  +++       G       +  E   +P  +     
Sbjct: 202 DVYDQDIAQKVIETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKR 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++  
Sbjct: 257 HGLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q +Y++ I  S+  L N+ NDI+++  ++   ++L+  TI     L +++     
Sbjct: 313 -LNEEQLKYLKTIHVSAIALGNIFNDIIEMDKLERRKVQLDNQTIDFTGFLTDLENLSGL 371

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    +   +  D  L    + D  RL QI   ++ NA+ F+ +G   +          
Sbjct: 372 LVQPKGLSFTLAPDPALPHKVMVDGTRLRQILWNLIGNAVKFTQRGGVSVRVWREQQDKL 431

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
           +F V++ G  IP +    +F  +         +   G G+GL++ +      GG + +SS
Sbjct: 432 LFEVRDTGIGIPPEEQDKIFAMYYQVKDMHGGKPATGTGIGLAVSKRLAQTMGGDIVVSS 491

Query: 777 SDEGVTTINCRI 788
                      I
Sbjct: 492 VAGEGACFTLSI 503



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 21/168 (12%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +I  RV    A  R+  LD +  E+ +  L   +L    ++ +   DS   LV++R++ G
Sbjct: 118 EIADRVKAEEA--RLQVLDTLQHEIDQRELAQVELEQQSALLRSFLDSSPDLVYYRNENG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL--- 269
           +    N + +  T   G   ++ IG   R ++ ++I +++I +   EK F   VS     
Sbjct: 176 EFSGCNRAMELLT---GKSEKQLIGLTPRDVYDQDIAQKVIETD--EKVFRHNVSLTYEQ 230

Query: 270 ----EHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
                 G    +++       RV    G  G   D+++     D L +
Sbjct: 231 WLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|302864835|ref|YP_003833472.1| ATP-binding region ATPase domain-containing protein [Micromonospora
            aurantiaca ATCC 27029]
 gi|302567694|gb|ADL43896.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
            ATCC 27029]
          Length = 1454

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 130/274 (47%), Gaps = 18/274 (6%)

Query: 533  LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
            L + Q         +   A   L EK + L +A   K+ F+ ++S+ELR+PL +++    
Sbjct: 1009 LLSEQKANIETQNREIELARLGLEEKAQQLTRASAYKSEFLANMSHELRTPLNSLLLLAR 1068

Query: 593  LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LL  +   +L++KQ ++   I  + + LL+L++DILDL+ ++AG M +  + I   ++  
Sbjct: 1069 LLAENPERNLSAKQIEFARTIHGAGSDLLSLIDDILDLSKIEAGRMDVEPTEIQFAEIRG 1128

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             V+Q+ A +  E  +  +V     L    V D QRL QI   +LSNA+ F+  G+ V L+
Sbjct: 1129 YVEQAFAPQAEEKGLDFQVRVSRDLPPALVTDAQRLQQILRNLLSNAVKFTDNGA-VTLR 1187

Query: 712  AARDNGDFI--------------FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVG 755
                  + +              F+V + G  I +D    +F  F         +  G G
Sbjct: 1188 IGLAADNAVFDVPALTNAQRVIAFTVIDTGIGISDDKLSLIFEAFQQADGTTSRRYGGTG 1247

Query: 756  LGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            LGLSI      L GG +++SS+    +T    +P
Sbjct: 1248 LGLSISRDLARLLGGTITVSSAPGQGSTFTLFVP 1281


>gi|253571534|ref|ZP_04848940.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 1_1_6]
 gi|251838742|gb|EES66827.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 1_1_6]
          Length = 1353

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 112/252 (44%), Gaps = 6/252 (2%)

Query: 539  MLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  F  +  S+ A+  +     E   + +++K  F  ++S+ELR+PLT I+     +   
Sbjct: 805  VFRFFWMRKSMEAQLEIERRDKEHQEEINQMKMRFFINISHELRTPLTLILTPLQEIINK 864

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                    Q +Y++    ++  LL+LVN ++D    + G+ +L       + L+ +    
Sbjct: 865  ISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKAKKGNAHQLIQDNFLF 921

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                     I   + S+ +    + D   L  I + +LSNA  ++  G ++ +    +NG
Sbjct: 922  YDKLARHKKITYTLHSELEDKEVLFDANYLELIVNNLLSNAFKYTESGQSITVTLKEENG 981

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +  V + G  IP +    +F RF       +  G G+GLS+V+  I LH G + + S 
Sbjct: 982  WLLLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQRLIELHHGRIELDSE 1039

Query: 778  DEGVTTINCRIP 789
            +   +T +  +P
Sbjct: 1040 ENKGSTFSVYLP 1051


>gi|89893853|ref|YP_517340.1| hypothetical protein DSY1107 [Desulfitobacterium hafniense Y51]
 gi|219668229|ref|YP_002458664.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|89333301|dbj|BAE82896.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538489|gb|ACL20228.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 464

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 3/257 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N Q         +  +    L    E + K +++KN F+  VS+ELR+PLT+I+G+   L
Sbjct: 206 NFQIKSRKKRDDEIGKLADTLNYMAEEITKKEKLKNDFISSVSHELRTPLTSIMGWAITL 265

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           ++ K        +  +  I+  S  L  +V ++LD +   +G +KL+Y  + + +L+  +
Sbjct: 266 QSEKFQQ-KEMLNDGLGIIAKESERLTRMVEELLDFSKFVSGRIKLSYEEVNMAELMEHI 324

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           ++ +  +     I+  V     L   + D  RL Q+   IL NA++F++   +V  +A  
Sbjct: 325 RKQLTPRATRETIQFTVDYPENLPDLLTDPNRLKQVLINILDNALNFTAAEGSVRFQAEV 384

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
              D+ F++ +NG  I       V  +F        R   G+GLSI E  I L  G + I
Sbjct: 385 GEKDYTFTISDNGCGIAAGELPMVKEKFYKGKSSRSRN--GIGLSICEEIITLMKGRLEI 442

Query: 775 SSSDEGVTTINCRIPSK 791
            S     TT+   +P +
Sbjct: 443 HSEVNVGTTVVITLPRE 459


>gi|29350071|ref|NP_813574.1| two-component system sensor histidine kinase/response [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|298384392|ref|ZP_06993952.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_14]
 gi|29341983|gb|AAO79768.1| two-component system sensor histidine kinase/response [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|298262671|gb|EFI05535.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_14]
          Length = 1353

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 112/252 (44%), Gaps = 6/252 (2%)

Query: 539  MLTFVNVTDSVRAERAL-TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +  F  +  S+ A+  +     E   + +++K  F  ++S+ELR+PLT I+     +   
Sbjct: 805  VFRFFWMRKSMEAQLEIERRDKEHQEEINQMKMRFFINISHELRTPLTLILTPLQEIINK 864

Query: 598  KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                    Q +Y++    ++  LL+LVN ++D    + G+ +L       + L+ +    
Sbjct: 865  ISDRWTRNQLEYIQ---RNANRLLHLVNQLMDYRRAELGVFELKAKKGNAHQLIQDNFLF 921

Query: 658  IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                     I   + S+ +    + D   L  I + +LSNA  ++  G ++ +    +NG
Sbjct: 922  YDKLARHKKITYTLHSELEDKEVLFDANYLELIVNNLLSNAFKYTESGQSITVTLKEENG 981

Query: 718  DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
              +  V + G  IP +    +F RF       +  G G+GLS+V+  I LH G + + S 
Sbjct: 982  WLLLQVSDTGIGIPINKQGKIFERFYQIES--EHVGSGIGLSLVQRLIELHHGRIELDSE 1039

Query: 778  DEGVTTINCRIP 789
            +   +T +  +P
Sbjct: 1040 ENKGSTFSVYLP 1051


>gi|332288845|ref|YP_004419697.1| aerobic respiration control sensor protein ArcB [Gallibacterium
           anatis UMN179]
 gi|330431741|gb|AEC16800.1| aerobic respiration control sensor protein ArcB [Gallibacterium
           anatis UMN179]
          Length = 753

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 157/383 (40%), Gaps = 12/383 (3%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
              + + +T +   +             ID   + V     +G++   N A   L    E
Sbjct: 98  LALLEQEITAKNKAQIALQQKADFLRSFIDASPDLVFSRAENGQLLECNRAMELLTGKSE 157

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
             L      +  ++  ++Y   +D   L      +++   K   G L     +  E   +
Sbjct: 158 TELKTLEIEQTFSSDIAKYVRATDRAVLDNNYGMTYEQWFKYPNGKL-----ACFEIRKV 212

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P  +       +        E       E + KA   K++ +  +S+ELR+PL  IIG +
Sbjct: 213 PYYDRINKQHCLLGFGRDITEH--KRYQETIEKASRDKSTLMATISHELRTPLNGIIGLS 270

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L  S+   LN +Q  Y+  I+ S+  L ++ +DI+DL  +D   ++L      +  LL
Sbjct: 271 RILLDSQ---LNEEQRNYLHTINVSAVSLGHIFSDIIDLEKLDTRRIQLYKKETDVMRLL 327

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           +++        ++ N+  K+  D  L + +  D  R+ QI   +++NA+ F+  G   + 
Sbjct: 328 SDIDNFATFMTNQKNLSFKLEYDQNLPNLLLLDYARVSQILWNLINNAVKFTPSGGLTLR 387

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
            +  D   + F++ + G  IP+   K +F  +       Q+  G G+GLSI +    L  
Sbjct: 388 FSRLDQNTYSFALTDTGIGIPQSELKKIFAMYYQVRTANQKALGSGIGLSISKRIAKLMN 447

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G +++ S     +T      +++
Sbjct: 448 GDLTVVSELGKGSTFTFTFKAEQ 470


>gi|303245671|ref|ZP_07331954.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492934|gb|EFL52799.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 818

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/547 (16%), Positives = 189/547 (34%), Gaps = 100/547 (18%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
            H  +    L  A  + D    ++  N   V L+          P               
Sbjct: 10  RHFRQFCDALPEAALLVDAEGRVRHANAGAVRLFGNVCGHSCPLPGPSA----------- 58

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV--IVTSNPRGGTIWM--FENLTV 421
            +    + W +                    G+  H+  I  +   G   ++    + + 
Sbjct: 59  -QDGGDREWADG-------------------GRLYHIRRIRLTAADGSLFFLDWIRDASE 98

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL------- 474
              L  +     +     ++++ EGV +   +G++   NP    L   +   L       
Sbjct: 99  LAALRGQLARCQRQFSTIVENVMEGVTI-AVNGKLAYVNPFMERLTGYDAATLLARPFTT 157

Query: 475 -------------------SPGTHIRNIAATCSRYYN-----------ESDGWDLFAAII 504
                                      +    +R              E +      +++
Sbjct: 158 FLHEEDRDGVLTNHKRRLAGQPAPPGQVFRILTRRGEARWVQAVSARIEWEDAPASLSLL 217

Query: 505 TSFDDERKSLQGTLELLSD---SVLEYSIIPLPNAQTMLT-----FVNVTDSVRAERALT 556
           +    +R++     EL+ D    +   +       +T+ T        + +  R  R LT
Sbjct: 218 SDITPQRQAQLALAELIRDQESRIASRTASLREANRTLETANERLTREIEEHERTARKLT 277

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVEYISA 615
              +   +A + K+ F+ ++S+E+R+PL  I+G  DL L+    G ++    + +E I  
Sbjct: 278 AARKKASQASKAKSIFLANMSHEIRTPLNVILGMADLALRPDSQGQVD--HVRALEMIRE 335

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK-VISD 674
           +   L  L+ D+LDL+ ++AG + L       + +L+      A       + ++  ++ 
Sbjct: 336 AGASLRALLGDLLDLSRIEAGRLDLESIPFSPSRVLDAALSGHAVLAARQGLALEGHVAS 395

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------FIFS 722
               + V D  RL Q+ + ++ NA+ F+  G  + +   R +GD             +FS
Sbjct: 396 DVPETLVGDPGRLGQVLANLIGNALKFTPAG-RIDVFVRRGDGDKEGGCPEPEVVTLLFS 454

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V++ G  I  +  K++F  F         Q  G GLGL+I    + L GG + ++S    
Sbjct: 455 VRDTGVGIDPEKRKAIFQSFRQADESITRQYGGTGLGLAICRRLVGLLGGRIRVASRPGE 514

Query: 781 VTTINCR 787
            +  +  
Sbjct: 515 GSEFSFT 521



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 65/258 (25%), Gaps = 26/258 (10%)

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
                F+   D+L       D  G +  AN    +        F    G S  L     +
Sbjct: 7   GDTRHFRQFCDALPEAALLVDAEGRVRHANAGAVRL-------FGNVCGHSCPLPGPSAQ 59

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTH-- 307
                  A                 +  ++     S        D S+   +  QL    
Sbjct: 60  DGGDREWADGGRLYHI---------RRIRLTAADGSLFFLDWIRDASELAALRGQLARCQ 110

Query: 308 --TYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
                I+ N+   + I   N  L + N     L   D A L   P    L E  R     
Sbjct: 111 RQFSTIVENVMEGVTI-AVNGKLAYVNPFMERLTGYDAATLLARPFTTFLHEEDRDGVLT 169

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVD 424
             +            V++      +  W       +           ++ +  ++T Q  
Sbjct: 170 NHKRRLAGQPAPPGQVFRILTRRGEARWVQAVSARIEWEDAP----ASLSLLSDITPQRQ 225

Query: 425 LETKYNTLVKVQGETIDH 442
            +     L++ Q   I  
Sbjct: 226 AQLALAELIRDQESRIAS 243


>gi|301052938|ref|YP_003791149.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375107|gb|ADK04011.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 466

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +      LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  IRI    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++++   +++   + +     ++K+ G  I  +  +++  RF        
Sbjct: 358 LHNVLDNAIRYTNQNGDIMITLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKL 457


>gi|260642402|ref|ZP_05415738.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622214|gb|EEX45085.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 613

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 7/247 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +R+++ L    +   +++ +K++F+ ++S+E+R+PL +I+GF+D+L     GS   ++
Sbjct: 368 ELLRSDKDLRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA--VEGSTEEER 425

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y + I  +S +LL L+NDILDL+ ++A  + L +    +  L  +V  S++     ++
Sbjct: 426 QSYFQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDIVLLCRQVVASVSFSRQSSD 485

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN--GDFIFSVK 724
            +    +  +      D QR+ Q+   +LSNA  F+ KG  + L  + D   G  +FSV 
Sbjct: 486 NQFLFTTSFETYRMETDIQRMQQVIINLLSNADKFTKKG-KITLDFSVDEKTGMAVFSVT 544

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           + G  IP++  K VF RF       Q  G GLGLSI +  ++   G + I     G    
Sbjct: 545 DTGCGIPKEKQKLVFERFEKLNEYAQ--GTGLGLSICKLIVSKWKGAIWIDPDYTGGARF 602

Query: 785 NCRIPSK 791
               P K
Sbjct: 603 IFSHPLK 609


>gi|218440686|ref|YP_002379015.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218173414|gb|ACK72147.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 466

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 3/244 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +    L   +E L   +  + +F+ +VS+ELR+P++N+    + L      S     
Sbjct: 226 ELGQLASELNRMSELLASVERERRAFLANVSHELRTPVSNVKVTLEALSIGA-ASEPELC 284

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            ++++        L  L+ D+LDL  ++AG+  L   ++ L  L+N   ++I  +   + 
Sbjct: 285 DRFIQTAQNEINRLSRLIQDLLDLGRLEAGVAPLEIQSVSLRSLINRAIEAIELRTFHHG 344

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           + I   +D        D +R+LQ    IL NA+ +S  GSTV L    +N   I  +K+ 
Sbjct: 345 VNIN--NDVPDLELNVDSERMLQALLNILENAIKYSPPGSTVSLMGYTENNQKIIQIKDE 402

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I  +    +F  F  +    Q  G GLGL+I +  I  HGG ++  S     TTI  
Sbjct: 403 GIGIKPEALPHIFEEFYRSDSSRQSDGTGLGLAISQRIIKAHGGTITADSVLGEGTTIII 462

Query: 787 RIPS 790
             P 
Sbjct: 463 SFPK 466


>gi|206977539|ref|ZP_03238433.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217958875|ref|YP_002337423.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|222095034|ref|YP_002529094.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|229138086|ref|ZP_04266684.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26]
 gi|206744257|gb|EDZ55670.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217063391|gb|ACJ77641.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|221239092|gb|ACM11802.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|228645431|gb|EEL01665.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26]
 gi|324325417|gb|ADY20677.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 466

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 129/280 (46%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +    + LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITKPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  IRI    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++++   +++   + +     ++K+ G  I  +  +++  RF        
Sbjct: 358 LHNVLDNAIRYTNQNGDIMVTLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S     TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKL 457


>gi|282897504|ref|ZP_06305505.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9]
 gi|281197599|gb|EFA72494.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9]
          Length = 647

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 132/296 (44%), Gaps = 21/296 (7%)

Query: 514 LQGTLELLSDSVLEYS----IIPLPNA-------QTMLTFVNVTDSVRAE-RALTEKNEA 561
           L   LE L D  L       + P+P         Q       + + ++A    L    + 
Sbjct: 343 LANPLEELRDYALNIHSHHAVQPIPRNFRIKEFNQLAQALDQMVERLKAWTEELEMAWKE 402

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
            + A+ +K+ F+ + S+ELR+PL  II    L++   L     ++ ++++    ++  LL
Sbjct: 403 AKSANTVKSQFLANTSHELRNPLNIIINCVRLVRDG-LCDDKEEELEFLKKADDTAIHLL 461

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++ND+LD++ ++AG + +    + L  LL EV    +  + +  +++K     ++    
Sbjct: 462 GIINDLLDISKIEAGKLSVVMIPLELRQLLLEVINLQSVNVEKKGLQLKCEILEQIIPIK 521

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKS 737
            DR +L Q+   ++ NA  F+ +GS + +       +     + SV + G  I       
Sbjct: 522 GDRIKLKQVLINVIGNATKFTEEGS-ITISTKTIQQNSKLYVVISVVDTGIGIDPQQQHK 580

Query: 738 VFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS-SDEGVTTINCRIPS 790
           +F  F  V  +   +  G GLGL+I  + I L GG +S+ S      TT+   +P 
Sbjct: 581 LFRPFVMVDGSTTRKFEGTGLGLAISRNLIELMGGKISLESLGLNRGTTVKIILPL 636


>gi|302873162|ref|YP_003841795.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307688673|ref|ZP_07631119.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302576019|gb|ADL50031.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 728

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/494 (17%), Positives = 186/494 (37%), Gaps = 67/494 (13%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           + ++      I+ +++  +   D +  L   N + ++L  ID                  
Sbjct: 291 LFEEKNKLSNIIKSISEGLLALDTDMKLIDINEAAIKLLGID------------------ 332

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
                    + K         Y+++E   +  ++ +     V   +N             
Sbjct: 333 -------DKDAKQLLPISNENYEATEKLSEVNNISDEAVEKVSSINNA------------ 373

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE--NRLSPGT 478
                    N  V  +   I++ +        D ++ + N A     +        S  T
Sbjct: 374 ---------NDDVAKKSPVINNANN-----DVDKKLSVINNASDEETEKLSAVKNSSATT 419

Query: 479 HIRNIAATCSRYYNE-SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            I       ++Y+ E  + +     I      + +  +  ++   + +L++SI P+  + 
Sbjct: 420 KIEEPKEDSTKYHIEIMEIFQQLNLIEALGLKDIQEKKSVIKNFKNKILDFSIAPIRKSS 479

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
             +    +     +E+          K ++++  F+ +VS+E R+PLT I G  + +   
Sbjct: 480 NEIIGGVILIQDISEKE---------KLEQLRKDFISNVSHEFRTPLTVIKGNLESIVDG 530

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                     +    +   +  L  +V D+L+L+ +++G ++L  S + +N L+N+  +S
Sbjct: 531 ITRP--EDVMETCINLIKETNRLERMVKDLLNLSKLESGTLELEVSDLDVNLLINDTIRS 588

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
           +   + + NI I++     L    +D  +L Q+    + N++ FSSKG  V +     + 
Sbjct: 589 LRPLIRDKNIAIELSLQEDLSILQSDYYKLKQLLIIFIDNSIKFSSKGGVVKVDTYSKDK 648

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSIS 775
           +   ++K+NG  IP++  + +  +F            G GLGLSI +  + +  G   + 
Sbjct: 649 ELYIAIKDNGIGIPQEEIQYLGEKFYKADKARNATVEGTGLGLSIAKRLVKVLNGTFKVE 708

Query: 776 SSDEGVTTINCRIP 789
           S     T I    P
Sbjct: 709 SQVNQGTRIIISFP 722


>gi|89901045|ref|YP_523516.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89345782|gb|ABD69985.1| periplasmic sensor hybrid histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 1009

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 118/246 (47%), Gaps = 13/246 (5%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L +  +A  +A   K+ F+ ++S+E+R+P+  ++G   LL  +    L+  Q  Y+  
Sbjct: 252 QELQQAKDAAEEATSAKSEFLANMSHEIRTPMNAVLGMLYLLLKT---DLSPTQHNYLAK 308

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              ++  LL  +NDILD++ ++AG + +      L+ +L ++  +I  +  +  I   + 
Sbjct: 309 AQGAAHSLLGTINDILDISKIEAGKIDIESVEFGLDAVLGQLTDAIGYQAEQKGIEFLIR 368

Query: 673 SDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVI--LKAARDNGDFIFS--VKNNG 727
            DG +  F + D  RL Q+   +  NA+ F+ +G   +  L  ++          V+++G
Sbjct: 369 YDGSIPPFLIGDPLRLGQVLLNVCGNAVKFTEQGQVELGFLSTSQTEVGLTLQVYVRDSG 428

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSIS-SSDEGVTT- 783
             I  ++  ++F +F        RR  G GLGL I +S + L GG + I  S     TT 
Sbjct: 429 IGIAREVQNTLFKKFTQADQSTTRRFGGTGLGLVISKSLVELMGGRIWIEDSQPGKGTTI 488

Query: 784 -INCRI 788
               ++
Sbjct: 489 CFTVQL 494


>gi|163938573|ref|YP_001643457.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163860770|gb|ABY41829.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 456

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +     +++      L      ++ F+  V++ELR+PLT + G+ D+   SK  
Sbjct: 207 TTTRNDEIGELAQSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADI--ASKEN 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + I  
Sbjct: 265 TPPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEKHNFFIQVQEVHLHTFLTRITEKINV 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+ + IL+NA   S + S + +    ++    
Sbjct: 325 MYGEKQIKVVFTCPSSLL-VKLDEQRFEQVMANILNNAYRHSKEHSHINISVTEEHKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITIEDEGEGIPPEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEI 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFTISLPS 455


>gi|116750316|ref|YP_847003.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699380|gb|ABK18568.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 615

 Score =  247 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 150/369 (40%), Gaps = 24/369 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
                  +      D + EGV V    GRI+ +N +F  L    ++ ++    +  I   
Sbjct: 248 RTITEQKQQLEAVFDAMQEGVMVLDTRGRIRTTNRSFSGLVPG-DSAVAGRRPLEVIVNV 306

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                   +  D   A  ++ D E       + L  +   + +I+ + ++QT    V V 
Sbjct: 307 -----ELQESCDRIMA--STSDSEGAPFSLQITLGQERTYDVNIVGIADSQTGAGAVVVF 359

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
                          L++ ++++  FV +VS+ELR+PLT+I G+T+ L            
Sbjct: 360 ----------HDISELKRLEKVRQDFVANVSHELRTPLTSIKGYTETLLAEDRVD-PHML 408

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S +++ +  ++  ++ +V D+L LA ++A     N   +   + L    ++ A +     
Sbjct: 409 SSFLQIVLKNTNHVVKIVEDLLQLARLEAQQKPPNAVPVNAANALTAAWKACAHQAESKR 468

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R++           AD  +L+Q+F  +L NA+ +S +G  V +            V++ 
Sbjct: 469 VRLESTLPEGGVWVCADFDQLVQVFRNLLENAIRYSPEGEAVTVSHEARREKVTLMVRDE 528

Query: 727 GSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT- 783
           G  IP    + +F RF              GLGL+I    +   GG + + S + G TT 
Sbjct: 529 GPGIPGAHQQRIFERFYRVEKHRSDNWGSTGLGLAICRHILRNLGGRIRVQSPNTGGTTG 588

Query: 784 --INCRIPS 790
                 +P+
Sbjct: 589 TAFLFTLPA 597



 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL 355
           +   T+ +Q      +   +   + + D    ++  NRSF  L   D A     P    +
Sbjct: 245 NHVRTITEQKQQLEAVFDAMQEGVMVLDTRGRIRTTNRSFSGLVPGDSAVAGRRPLEVIV 304

Query: 356 LEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG--QTLHV----IVTSNPR 409
              L+ +             + I +    SE    +  +  G  +T  V    I  S   
Sbjct: 305 NVELQES------------CDRIMASTSDSEGAPFSLQITLGQERTYDVNIVGIADSQTG 352

Query: 410 GGTIWMFENLTVQVDLET 427
            G + +F +++    LE 
Sbjct: 353 AGAVVVFHDISELKRLEK 370


>gi|298374088|ref|ZP_06984046.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
 gi|298268456|gb|EFI10111.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
          Length = 1359

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 14/272 (5%)

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAERALTEKN-EALRKADEIKNSFVQHVSYELRSPLTN 586
            Y I  +  A  ++ F+      + E            + DE+K  F  +VS+E R+PLT 
Sbjct: 802  YIIAGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTL 861

Query: 587  IIGFTD-LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
            I+   + L+KT K    + +  Q ++ I  ++  LL LVN +LD   +D     L  ST 
Sbjct: 862  IMTPLEKLMKTEK----DLESQQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTG 917

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
             +   + +V  S      +  I     S         D  ++ +I S +LSNA  F+ +G
Sbjct: 918  DIVPFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEG 977

Query: 706  STVILKAA-----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLG 757
             T+ +  +           +  V ++G  IP D   ++F+RF   A   +     G G+G
Sbjct: 978  GTISVTLSLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVASPDKGNPVVGTGIG 1037

Query: 758  LSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            L +   F+ +H G +++ S     +T    +P
Sbjct: 1038 LHLCREFVRMHHGTITVKSEPGAGSTFTVTLP 1069


>gi|253681304|ref|ZP_04862102.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253562542|gb|EES91993.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 469

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 3/234 (1%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               ++L + +E +  F+ +VS+ELRSP+T+I GF   +    +     K++ Y+     
Sbjct: 234 NSMAKSLEEVEENRRVFISNVSHELRSPITSIKGFIGGILDGVIPK--EKENYYLSVAYE 291

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
               L  L+ND+LDL++++AG   LN     +N+++        T +    I ++V  D 
Sbjct: 292 EIQRLTRLINDLLDLSSIEAGKFVLNVKEEDINEIIRLSIIKFETVIKSKKINVEVWLDE 351

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +  S + DR +++Q+ + ++ NA+ +  +   + ++          SV N+G +I E+  
Sbjct: 352 ERLSVLVDRDKIIQVITNLIDNAIKYGKEEGNIEIRTKVKGQKVFVSVYNDGPNISEEDG 411

Query: 736 KSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           K +++RF         +   GLGLSIV   +  HGG V   + +         +
Sbjct: 412 KYIWDRFYKGDKSRTLKVSTGLGLSIVRRIVTQHGGDVWFENRENKGVKFTFTL 465


>gi|237729582|ref|ZP_04560063.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp.
           30_2]
 gi|226908188|gb|EEH94106.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp.
           30_2]
          Length = 1080

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L  +     +A + K+ F+  +S+ELR+P+++I+GF +LL +S+L    +++ + +  
Sbjct: 581 QELENEKNKAIEATKAKSRFLASMSHELRTPVSSIVGFVELLSSSELSP--AQRKEAIAL 638

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
             A++  LL L+  ILD+  +++G  ++      L+ L+     S      +  I +  +
Sbjct: 639 TGATAQSLLGLIGKILDVDKIESGKYQVVPQWTDLSQLIELQCHSFDALARQKGITLACV 698

Query: 673 SD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIFSVKNN 726
           S          D+Q L QI + ++ NA+ F+ +GS + + A       ++G    ++ + 
Sbjct: 699 SQLPANERVFVDQQALRQILTNLVGNALKFTEQGS-IHVTARLMPEGENHGTLTIAISDT 757

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I E+    +F R+       Q+ G GLGL I +  + L GG + + S     TT   
Sbjct: 758 GCGISEEEQAGLFQRYAQGRCGRQQTGSGLGLFICKELVTLMGGTLELMSVPLQGTTFTI 817

Query: 787 RIPSK 791
            +P +
Sbjct: 818 TLPVE 822


>gi|160880960|ref|YP_001559928.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160429626|gb|ABX43189.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 467

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 135/280 (48%), Gaps = 5/280 (1%)

Query: 512 KSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNS 571
           K LQ    ++ +   E   + LP+       +    + +   ++ +  E +     ++  
Sbjct: 185 KPLQQIAYIMVNYKEENPELSLPSTPYDELNIIAQSAQKMSDSVKKYTEEIEFERMVRQE 244

Query: 572 FVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLA 631
           F  + S+EL++P+T+I G+T+LL    +    +   ++++ I A +  + NL+NDIL ++
Sbjct: 245 FFSNASHELKTPITSIRGYTELLLGGFIND-EATSEEFMKRILAETESMTNLINDILLIS 303

Query: 632 TVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIF 691
            ++    ++  + I +  LL ++ +++     +  + ++ +   K     A++Q L ++ 
Sbjct: 304 RLETRDYEIETTEIRMAMLLQDIIKTLEPIAAKQEVELQTVC--KPVIVRANKQHLRELL 361

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR 751
             ++ NA+ ++     V +       D +  VK+ G  IP+D    VF RF        R
Sbjct: 362 LNLIGNAIKYNKPNGMVYVTITTIGRDLLIEVKDTGIGIPKDSLVRVFERFYRVDKGRSR 421

Query: 752 R--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  G GLGLSIV+  +N +GG++++ S     +T   R+P
Sbjct: 422 KVDGTGLGLSIVKHIVNYYGGNITLDSKINVGSTFTVRLP 461


>gi|261253028|ref|ZP_05945601.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260936419|gb|EEX92408.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 769

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 117/241 (48%), Gaps = 10/241 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + LT   E   +A + K+ F+  +S+E+R+P+  ++G  ++L+ +   +L ++Q + V  
Sbjct: 225 QTLTAAREGAEQACDSKSRFLASMSHEIRTPMNGVLGILNILEET---NLTNEQKKLVST 281

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
            + S   LL+++NDILD   +++  + L +        +  V  + +      N+ +   
Sbjct: 282 ATESGHFLLSVINDILDFTRMESNTLILEHKPFDFRHCVESVVDTFSPAATNQNLILHCY 341

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNG---DFIFSVKNNG 727
            +G + S    D  R+ QI   ++ NA+ F+ +GS T+ + A   +       F +++ G
Sbjct: 342 IEGSVPSKVNGDENRVKQILLNLIGNAIKFTHEGSVTIKVCATPLDNGKAKITFEIQDTG 401

Query: 728 SSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I ++    +F+ F  V  ++   + G GLGL+I     NL  G VS+ S  +  +T  
Sbjct: 402 IGISQNAIDYLFDEFTMVDQSYSRSKEGSGLGLAICRRLCNLMDGEVSVISEPDIGSTFV 461

Query: 786 C 786
            
Sbjct: 462 F 462


>gi|254784846|ref|YP_003072274.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237684144|gb|ACR11408.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 573

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 12/253 (4%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
            +R    L EKN AL KA   K++F+ ++S+ELR+PL  +IG   LL+ +    LN++Q 
Sbjct: 176 MIRLRTRLREKNVALEKALNAKSTFLANMSHELRTPLNGVIGMVSLLEET---PLNAEQR 232

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           +    IS SS  LL ++N+ILD + ++AG + L  +    + ++NE+ +       +  +
Sbjct: 233 KISGIISTSSKNLLEVINNILDFSKIEAGKVALTQAPFDPHKIVNEIYKISTANARDKKL 292

Query: 668 RIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDFIFS 722
             ++     L    + D   L Q+   ++SNA+ F+  G    +  ++K   D     F 
Sbjct: 293 DFRLNIARNLPKRLIGDAFYLKQVLLNLISNAIKFTQMGYVEFAIEVIKLEADRTFLRFR 352

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           + ++G  I +     VF +F    +   R   G GLGLSI    +   G  +++SS+   
Sbjct: 353 ISDSGVGIDKKQQAVVFEKFAQEDNSTTRQFGGTGLGLSISSQIVASMGSQINLSSAKGQ 412

Query: 781 VTTINC--RIPSK 791
            ++      +P +
Sbjct: 413 GSSFWFDLELPVE 425


>gi|255281630|ref|ZP_05346185.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255267697|gb|EET60902.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 350

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 129/258 (50%), Gaps = 4/258 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N QT +   +  +     ++  +  + L   + +++ F+ + S+E +SP+ +I GF  L+
Sbjct: 95  NFQTKIYIEHPREFRELSKSFNQMTDELSGIEMLRSDFINNFSHEFKSPIVSISGFARLM 154

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K+  L     +Q +Y++ I + S  L  L  ++L+L+ V++  +  +++   L++ + + 
Sbjct: 155 KSGNL--TEEEQQEYLDIIISESARLSELSTNVLNLSKVESMTLLTDFTCYNLSEQIRQC 212

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              +  K  + NI  ++  +  +   + +   L Q+++ ++ NA+ FS +GST+ +   +
Sbjct: 213 VVMLEAKWTQKNITFQLDMEELI--LMGNEALLTQVWTNLIDNAIKFSPEGSTIAIALTK 270

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
           D+     S+++ G  I  +  K +F++F          G GLGLS+V   + LH G VS+
Sbjct: 271 DDTAAHVSIRDEGIGIEPEKQKYIFDKFYQADTSHSVAGNGLGLSLVSRILKLHHGSVSV 330

Query: 775 SSSDEGVTTINCRIPSKE 792
            S+    +     +P  +
Sbjct: 331 DSAPGRGSIFVVSLPLSQ 348


>gi|37680265|ref|NP_934874.1| hypothetical protein VV2081 [Vibrio vulnificus YJ016]
 gi|37199012|dbj|BAC94845.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 571

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 117/258 (45%), Gaps = 10/258 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +   +N    +  E  L ++ E   ++++    FV  +++ELR+PL  ++G  +LL 
Sbjct: 178 ADLVSNALNRQLWMERETELRKRAE---ESEKATKEFVAMINHELRTPLNGVLGSAELLG 234

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q  Y+  +     +L  ++ND+LD + ++AG+M++        ++   + 
Sbjct: 235 NTY---LNDEQQLYLRNLRQGGELLRVIINDLLDFSKMNAGMMEIVPKVFRWREVEESIV 291

Query: 656 QSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              A K  E  I   +    G       D +R+ QI   ++ NA+ F+  G+ V  +   
Sbjct: 292 GIFAAKASEKQIGFHIEKQFGMPSCVCGDVERIKQILVNLIGNAIKFTQHGA-VTFRTHW 350

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
            +      +++ G  I E    ++F+ FV      +R   G GLGL+I ++  +L GG +
Sbjct: 351 QDDVLSVEIEDTGIGIAEQAKSTLFDPFVQADRSSKRNYEGSGLGLAICQNLCHLMGGEI 410

Query: 773 SISSSDEGVTTINCRIPS 790
              S     +  +  IP 
Sbjct: 411 GFRSELGQGSCFHFAIPL 428


>gi|121608695|ref|YP_996502.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter
           eiseniae EF01-2]
 gi|121553335|gb|ABM57484.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter
           eiseniae EF01-2]
          Length = 1195

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 109/240 (45%), Gaps = 5/240 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +A +       A  +A++ K+ ++  +S+ELR+PL +I+G+  L+       L  ++ Q 
Sbjct: 706 QARQVAEAAQRAADQANQAKSRYISAISHELRTPLNSILGYAQLMSEDP--GLPPQRQQA 763

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V  I      LL+L+   LD+A +++G + L  + +   D L E+      +     +  
Sbjct: 764 VHVIRRGGEHLLSLIEGTLDIARIESGKLTLEVAPMRFADGLREMASLFELQAAAKGLAF 823

Query: 670 KVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +    G L   V AD +RL QI   +L NA+ F+++G  V L+           V++ G 
Sbjct: 824 RFEPQGALPEVVRADEKRLRQILINLLGNAIKFTTQG-QVTLRVRHAREMARIEVQDTGP 882

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +     + +F  F          G GLGL+I +    L GG +++SS     +    ++
Sbjct: 883 GLTASAIERIFEPFTRAGAADT-PGAGLGLTIAKMLTALMGGELTVSSQPGVGSVFQVKL 941


>gi|168334021|ref|ZP_02692240.1| integral membrane sensor signal transduction histidine kinase
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 453

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 4/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     +A       L++ DE +  FV +VS+EL++PL +I   +D L   K   +   Q
Sbjct: 206 EMAELAKAFNLMTAKLQRVDETRQDFVSNVSHELKTPLASIKVLSDSLINDKNTPIEMYQ 265

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +++        L  ++ND+L L  +D+  + LN     LN L N + + +A    +  
Sbjct: 266 EFFLDINH-EVDRLNTIINDLLSLVKLDSNKLHLNLEETNLNQLTNAILKRLAPLATQKA 324

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I +   S+  +     D  +L    S ++ N + ++ +   V +    D+ +    V++ 
Sbjct: 325 ISLVYESERDI-KIEVDPLKLTLAISNLIENGIKYTPEHGEVSVIIKEDSNNAYIIVQDT 383

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I  D    +F RF        R   G GLGLSI    + +H G ++++S +   +  
Sbjct: 384 GIGIANDELPKIFERFYRTDKTRNRETGGTGLGLSITYRTVIMHKGSINVTSEEGKGSKF 443

Query: 785 NCRIPSKE 792
             ++P  +
Sbjct: 444 IVQLPLMQ 451


>gi|309790730|ref|ZP_07685279.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227221|gb|EFO80900.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 546

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 92/524 (17%), Positives = 203/524 (38%), Gaps = 45/524 (8%)

Query: 311 ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDEL-------LEFLRSAN 363
           ++  ++  + + +  + +   N +   ++      +  +P ++         L  + +  
Sbjct: 14  VIEKMSDGVVVLNHWQQVVDLNPAAEHIFGWQTQNMIGHPFSEMYPLWATISLPQIHAPE 73

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV----TSNPRGGTIWMFENL 419
              E    +  K+  F V  S+   +    +     L  I               +FE+L
Sbjct: 74  MCLEFRQGEGSKQRTFDVRVSAFADQHGELMGYLVVLRDISLYTQAQEELQARKALFEHL 133

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSE-------GVAVFGPDGRIKLS---------NPAF 463
                  T   TL+      +    +        + +   DG   LS             
Sbjct: 134 VSLARAGTAQPTLLATLRNMLRAARDICGAEYSSMILLREDGSPMLSFFSSGDTEYEHDG 193

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGW-----DLFAAIITSFDDERKSLQGTL 518
           R +    E+ L+        AA  +  + +   W     D+F + +     + + + G +
Sbjct: 194 RLIQHVLEHGLAGWVAREQQAACVADTWEDPRWWRDVQTDMFRSALVIPIPDGERILGVI 253

Query: 519 ELLSDSVLEYSIIPLPNAQ----TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            L    V  +        Q     +   +     +  +R L ++ EA    +  K+SF+ 
Sbjct: 254 TLGHREVGHFRSTHTELMQAAGDQIRLALRNAQMLENQRDLVDRAEAA---NRAKSSFIA 310

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +VS+ELR+PL  I+G++ +L             + ++ I+ +   LL+L+ND++DL+ ++
Sbjct: 311 NVSHELRTPLNAILGYSQILSMDIKQLKRPDLEESIDQITTAGQHLLDLINDVIDLSRIE 370

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
            G M L+YS + L   +  +  +       N+  + ++    +G  + D  ++ +I   +
Sbjct: 371 GGQMSLSYSYVDLASFMQHLINANQNLAALNHNSLVLVCPNDIGLVMIDAPKVRRILLNL 430

Query: 695 LSNAMDFSSKGSTVIL----KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           +SNA  F+  G    +    +++  +   + +V++ G  I  D  + +FN+F+       
Sbjct: 431 ISNACKFTDHGQITCIVELHRSSEADTMLVIAVRDTGIGIHPDQIEDLFNQFIQADSSST 490

Query: 751 RR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           RR  G+G+GL++      L GG +S+ S     +T    +P  +
Sbjct: 491 RRYGGLGMGLTLSRHLCQLMGGQISVESRPGYGSTFRVHVPVTQ 534



 Score = 38.8 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 69/200 (34%), Gaps = 13/200 (6%)

Query: 435 VQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNES 494
            +   I+ +S+GV V     ++   NPA   ++  +   +             +    + 
Sbjct: 10  ARSHVIEKMSDGVVVLNHWQQVVDLNPAAEHIFGWQTQNMIGHPFSEMYPLWATISLPQI 69

Query: 495 DGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERA 554
              ++          ++++    +   +D   E  +  L   + +  +    + ++A +A
Sbjct: 70  HAPEMCLEFRQGEGSKQRTFDVRVSAFADQHGEL-MGYLVVLRDISLYTQAQEELQARKA 128

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTN---IIG--FTDLLKTSKLGSLNSKQSQY 609
           L E   +L +A   + + +      LR+ L     I G  ++ ++   + GS       +
Sbjct: 129 LFEHLVSLARAGTAQPTLLAT----LRNMLRAARDICGAEYSSMILLREDGS---PMLSF 181

Query: 610 VEYISASSTILLNLVNDILD 629
                        L+  +L+
Sbjct: 182 FSSGDTEYEHDGRLIQHVLE 201


>gi|149277835|ref|ZP_01883975.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
 gi|149231523|gb|EDM36902.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
          Length = 684

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/523 (16%), Positives = 191/523 (36%), Gaps = 45/523 (8%)

Query: 296 SKEITVNDQLTHTYEILHNLTVAIAIFDQN-----RYLQFH-NRSFVELWEIDLAFLA-T 348
            +  ++N++L+   + L   T  +++ ++N       L F  + + +  W++D + ++  
Sbjct: 178 EELTSLNEELSAMNDELQQATQQVSLLNKNLKYSEDNLNFAIDAANLGTWDLDPSMMSFA 237

Query: 349 NPSNDELLEFLRSANKLPEQ----LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV 404
                     LR   ++P      + +   +E + +  + +  ++         T+   +
Sbjct: 238 GNERLRNWFGLRPYQEIPLDQATNVIFDQDRERVLAAIERAMDYQSGGLYDIKYTIMNPI 297

Query: 405 TSNPR-----GGTIW-----------MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
           T  PR     G  ++             +++T +     +     K     ++    G  
Sbjct: 298 TGIPRKVRAKGKALFDENGQATRFSGTLQDITEEEQTRVELEESRKGLELAMEAARLGAY 357

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAA-IITSF 507
                      +  F+  +   E      + +  +     + Y         A   I + 
Sbjct: 358 KLDLKLGKMSCSAQFKHNFGLTEQDKFDFSDMMEVVHADFKQYVMLQVEKAIAEKQIYNA 417

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
           +       GT     +  +  S +P  N      ++        E+          + D 
Sbjct: 418 EYPILWPDGT-----EHWVRVSGLPTYNHSGEAVYMMGVSFDITEQR---------RDDL 463

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            KN F+  VS+EL++PLT++ G+  +L        +   S  +  ++     +  ++N  
Sbjct: 464 RKNDFIGMVSHELKTPLTSLKGYVQVLHGKASKVKDEFASGMLSKVNNQVNKMNAMINGF 523

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
           L ++ +++G + L      L+ L+ EV          ++I        +     ADR ++
Sbjct: 524 LSISRLESGKILLVMEEFALDQLIAEVIDENEVLFPVHHIEFH---RCEGLMLNADRDKI 580

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
             + S ++SNA  +SS  S + +  +R+  + I SVK++G  IP +    +F R+     
Sbjct: 581 GHVVSNLISNAAKYSSAESVIEIHCSREGDEAIVSVKDSGIGIPAEDHGRLFERYYRVES 640

Query: 748 RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
                G G+GL +    I  H G + + S     +  +  +P 
Sbjct: 641 NNLISGFGIGLYLSAEIIERHHGRIWVESEVGKGSVFHFSLPL 683


>gi|23012953|ref|ZP_00052923.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 666

 Score =  247 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/280 (26%), Positives = 127/280 (45%), Gaps = 10/280 (3%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNV-TDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           LE L     +Y +  L +A  +   V    +    E  L E  ++  +A   K+ F+  +
Sbjct: 98  LEALKRGAQDYLVKGLGDAFILSRVVRYAIERKMGEEVLREARDSAEQAARAKSVFLAMM 157

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            +E+R+PL  ++G   LL  +    L+ +Q  + E + +S  +LL LVNDILD + +DA 
Sbjct: 158 GHEIRTPLNGVLGMARLLLET---DLDPRQKSFTETLVSSGELLLGLVNDILDFSRLDAE 214

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKIL 695
            M L      + D + EV+  + +++ E ++ +       +   V  DR RL QI   ++
Sbjct: 215 GMTLAVEPFDVLDTVEEVRLVLTSRVAEKDLTLTTRFGTGVRRVVAGDRLRLRQILFNLV 274

Query: 696 SNAMDFSSKGST-VILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            NA+ F+  G   + ++  A        F +K+ G  I  ++   +F  F        RR
Sbjct: 275 GNAIKFTDHGGIEISVEPLAVERGQVLRFLIKDTGIGIGPEIGARLFTEFWQGDSGAARR 334

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGL+I +   +L GG +   S     TT    +P 
Sbjct: 335 FDGAGLGLAICKRLTDLMGGEIGYDSLPGQGTTFRVDLPL 374


>gi|206968294|ref|ZP_03229250.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|229068335|ref|ZP_04201638.1| hypothetical protein bcere0025_5500 [Bacillus cereus F65185]
 gi|206737214|gb|EDZ54361.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|228714796|gb|EEL66668.1| hypothetical protein bcere0025_5500 [Bacillus cereus F65185]
          Length = 463

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKETTS 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 267 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYIKVSFSCPPTL-VVNLDEQRFEQVIINILNNAYRHSKEHSHINISVTEEHRRIF 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF        R   G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITIEDEGEGIPPEDLPHIFDRFYRVDKARTRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DYGSCFIISLPS 455


>gi|149178628|ref|ZP_01857214.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148842554|gb|EDL56931.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 667

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 10/227 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K++F+ ++S+E+R+P+  I+GF D+L        N + ++    I  +   L+ L+NDIL
Sbjct: 271 KSAFLANMSHEIRTPMNAILGFNDILLDGVSQPENIEAAR---TIKENGQFLIKLINDIL 327

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRL 687
           DL+ ++A  M++ +     + LLN +   +  +     + +    +G L  +   D  R+
Sbjct: 328 DLSKIEAEKMEVEHVPCSPHTLLNNIYSLMNVRAISKGLPLDFQIEGPLPETISTDPTRI 387

Query: 688 LQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFV 743
            QI    + NA+ F+  G+  ++    +  D      F V ++G  I      S+F  F 
Sbjct: 388 RQILINTIGNAIKFTETGAVKVVTRLINEPDRPARLQFDVIDSGIGIDAANIDSLFLPFT 447

Query: 744 SNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  R   G GLGL+I +    L GG ++I+S     TT +  I
Sbjct: 448 QADDSMTRKFGGTGLGLTISKRLTELLGGEITIASEPGKGTTFSITI 494


>gi|54298075|ref|YP_124444.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris]
 gi|53751860|emb|CAH13284.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris]
          Length = 827

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 179/393 (45%), Gaps = 28/393 (7%)

Query: 419 LTVQVDLETK-----YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           LT Q++ ++K        + +     I  +   V     +      +     L       
Sbjct: 132 LTEQINDKSKNTSDYVYAIYRYMENIIAQIPVSVYWMNKNHVYMGCSNNMVKLLNLNSRY 191

Query: 474 LSPGTHIRNIAATCS-RYYNESDGWDLFAAIITSFDDERKSLQGTLE--LLSDSV----L 526
              G    ++    S  YY ++D   +   I  S ++      GT +   LS+ V    L
Sbjct: 192 DIVGKTYEDLYHEKSTSYYKKADKIVMDKGIPLSLEEPFYCPDGTTKETYLSNKVPLRDL 251

Query: 527 EYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTN 586
           E  II       +   V++TD  + E  L++  EA  +A+ +K  F+ ++S++LR+PL+ 
Sbjct: 252 EGKII-----GMLGVSVDITDRKKMELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSG 306

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM-KLNYSTI 645
           ++G  +L+K      +   Q QY E+I   S  LL+L++ ILD+ ++      +L  +T 
Sbjct: 307 VVGMAELMKEQVTDPV---QVQYAEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTF 363

Query: 646 VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSK 704
            +N+ + E+       +    + + V  D K+   +  DR +L +I   +L NA+ F+  
Sbjct: 364 DINECIAELVHLEMPSIKLKQLDLIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDS 423

Query: 705 GSTVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
           G   I    L+   ++G   F++ + G  IPE+    +F+RF     +  G+ +G G+GL
Sbjct: 424 GYIAIDVKLLELNNESGLIYFAISDTGIGIPENQQTKIFDRFHRIIPSSIGKYKGHGVGL 483

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            IV+S++NL GG + ++S     TT    +P +
Sbjct: 484 HIVQSYVNLLGGEIQVNSEPGVGTTFYFELPIQ 516


>gi|330844471|ref|XP_003294148.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum]
 gi|325075445|gb|EGC29332.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum]
          Length = 952

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 146/355 (41%), Gaps = 28/355 (7%)

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            + + +  F     IK            ++        I  I  T ++   ++   ++FA
Sbjct: 183 QIGDNIMKFDKKNEIKQV---------FDKVCFDNNNIIGEI--TITKENGDNYPAEIFA 231

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             I         +   L  +SD +       L    T L   +  +  R    L E  + 
Sbjct: 232 KEIGDSQGNSNGIMIILRDISDQIT------LKEMNTELQNKSELEQKR-NLELMEARDQ 284

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
              A +IK+ F+  +S+E+R+PL  +IG  ++L  +    LN++Q    E I  S  +LL
Sbjct: 285 AVAATKIKSQFLATISHEIRTPLNGVIGMAEMLLKT--SPLNTEQHDIAETIFGSGELLL 342

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-F 680
           ++ +DILD + ++A  ++L          L  + ++I   ++   I I  + D  +    
Sbjct: 343 SITSDILDFSKIEASRLELEMIEFDFIGCLEGIAKTIGVSINNKPIEIVTLFDPDIPHRL 402

Query: 681 VADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNG--DFIFSVKNNGSSIPEDMCK 736
           V D  RL+QI   + +NA+ ++ KG  +  +   +R +        ++++G  I E+  K
Sbjct: 403 VGDPNRLVQIMLNMGTNAVKYTEKGHIIFKVSVLSRKHNWCKVKIGIEDSGIGIKEEQRK 462

Query: 737 SVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS-SSDEGVTTINCRI 788
            +F  F        R   G GLGL+I      L GG V +  S+    +  +  +
Sbjct: 463 HLFEPFHQIDASTTRKYGGSGLGLAISSKLAKLMGGSVLLEKSTPGVGSLFSVTL 517


>gi|183597937|ref|ZP_02959430.1| hypothetical protein PROSTU_01283 [Providencia stuartii ATCC 25827]
 gi|188022706|gb|EDU60746.1| hypothetical protein PROSTU_01283 [Providencia stuartii ATCC 25827]
          Length = 781

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 159/435 (36%), Gaps = 20/435 (4%)

Query: 364 KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTL--HVIVTSNPRGGTIWMFENLTV 421
           +L E     +   +   V +  +   +T    N + L   +I         + + E L  
Sbjct: 79  QLEESRQRLSRMVDKLEVMRKRDAELNTQLQGNIEQLNQEIIEREKAESAHLELLEQLKQ 138

Query: 422 QVDLETKYNTLVKVQ----GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPG 477
           ++    +    ++ Q       +D   + V     +      N A   L    E  L   
Sbjct: 139 EMKHREQTQIELEQQSTLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKHLVGL 198

Query: 478 THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
           T +       +    E+D       +  +++       G       +  E   +P  +  
Sbjct: 199 TPLDIYDVEIASKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRV 253

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
                +        ER      EAL  A   K +F+  +S+ELR+PL  I+G + +L  +
Sbjct: 254 GKRHGLMGFGRDITER--KRYQEALENASRDKTTFISTISHELRTPLNGIVGLSRILLDT 311

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
               L ++Q  Y++ I  S+  L N+ ND++++  ++   ++L+   + L   +N+++  
Sbjct: 312 ---DLTAEQMNYLKTIHVSAVTLGNIFNDVIEMDKIERRKVQLDNQPVALPQFVNDLENL 368

Query: 658 IATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
               +    ++  +     L    + D  RL QI   ++ NA+ F+ +G   +       
Sbjct: 369 SGLLVQPKGLKFVMDVAAGLPEKVLTDGTRLRQILWNLIGNAVKFTQQGEVKLSIWREGE 428

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVS 773
               F V+++G  IP+D    +F  +         +   G G+GLS+        GG + 
Sbjct: 429 DKLFFRVQDSGIGIPKDELDKIFAMYYQVTDSAGGKPATGTGIGLSVSRRLAQNMGGDIQ 488

Query: 774 ISSSDEGVTTINCRI 788
           + S     +     I
Sbjct: 489 VESEIGQGSIFTLSI 503



 Score = 39.5 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 171 LDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG 230
           L+ +  E+        +L    ++ +   D+   LV++R++  +    N + +  T   G
Sbjct: 133 LEQLKQEMKHREQTQIELEQQSTLLRSFLDASPDLVYYRNENNEFSGCNRAMELLT---G 189

Query: 231 IVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIV-- 280
              +  +G     ++  EI  +++ +   EK F   VS           G    +++   
Sbjct: 190 KSEKHLVGLTPLDIYDVEIASKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 281 ----RVLNSFGEAGIAIDVSKEITVNDQLTH 307
               RV    G  G   D+++     + L +
Sbjct: 248 PFYDRVGKRHGLMGFGRDITERKRYQEALEN 278


>gi|126727385|ref|ZP_01743220.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
 gi|126703380|gb|EBA02478.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
          Length = 832

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 166/389 (42%), Gaps = 18/389 (4%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           ++   +T +   E+            +    +GV V   +G I   NPA  +++ T E  
Sbjct: 197 YLNARITKR---ESDLKQSATRMKTIMGTSLDGVIVCDDNGIILEFNPAAEAMFGTIEED 253

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIP 532
           +        I     R  +E+    + A        + R  L+          +E +I  
Sbjct: 254 VLKKKIGDVIVPDYLRAAHEAGIKRMQANGEKRVVGKGRVRLEARHSSDRTFPVELAIQT 313

Query: 533 LPNAQT---MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG 589
               Q    +    +++  V AE  L    +    ++++K  F+  +S+E+R+PL  ++G
Sbjct: 314 AETDQGDVFIAFLRDISHRVAAESELVVARDKALASEKMKTEFLSTMSHEIRTPLNGLLG 373

Query: 590 FTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLND 649
             +LL+ +   +LN KQ +++ Y+  S  +L+N ++D+LD+   DAG +      + ++ 
Sbjct: 374 NMNLLRDT---NLNPKQERFIGYMETSGRLLMNHISDVLDITRYDAGKLSARSEPVNVSA 430

Query: 650 LLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTV 708
           L  ++  + +     N+  +     G    +V  D  RL  +   ++ NA+ F+  G  V
Sbjct: 431 LFQDIVDNQSGAAFNNSTSLTWNWIGNPMDWVTSDHDRLQHVMMNLIGNAVKFTKDGE-V 489

Query: 709 ILKAA----RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVE 762
            +           + +  + + G  + +++   VF  FV+   A+  +  G GLGLSI +
Sbjct: 490 SVSVENIGNAQEPELLVKIVDTGPGMSDELSARVFEDFVTGTTAYDREVGGTGLGLSIAK 549

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
            F++  GG + + S     +T   ++P +
Sbjct: 550 RFVSALGGEIGVESVLGKGSTFWFKMPVE 578



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 52/144 (36%), Gaps = 10/144 (6%)

Query: 292 AIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWE-IDLAFLATNP 350
           A    +E  +    T    I+      + + D N  +   N +   ++  I+   L    
Sbjct: 200 ARITKRESDLKQSATRMKTIMGTSLDGVIVCDDNGIILEFNPAAEAMFGTIEEDVLKKKI 259

Query: 351 SNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV---TSN 407
            +  + ++LR+A+   E    +        V        +  H  + +T  V +   T+ 
Sbjct: 260 GDVIVPDYLRAAH---EAGIKRMQANGEKRVVGKGRVRLEARHSSD-RTFPVELAIQTAE 315

Query: 408 PRGGTIWM--FENLTVQVDLETKY 429
              G +++    +++ +V  E++ 
Sbjct: 316 TDQGDVFIAFLRDISHRVAAESEL 339


>gi|27365587|ref|NP_761115.1| putative sensor/response regulator hybrid [Vibrio vulnificus CMCP6]
 gi|27361735|gb|AAO10642.1| Probable sensor/response regulator hybrid [Vibrio vulnificus CMCP6]
          Length = 571

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 117/258 (45%), Gaps = 10/258 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +   +N    +  E  L ++ E   ++++    FV  +++ELR+PL  ++G  +LL 
Sbjct: 178 ADLVSNALNRQLWMERETELRKRAE---ESEKATKEFVAMINHELRTPLNGVLGSAELLG 234

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q  Y+  +     +L  ++ND+LD + ++AG+M++        ++   + 
Sbjct: 235 NTY---LNDEQQLYLRNLRQGGELLRVIINDLLDFSKMNAGMMEIVPKVFRWREVEESIV 291

Query: 656 QSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              A K  E  I   +    G       D +R+ QI   ++ NA+ F+  G+ V  +   
Sbjct: 292 GIFAAKASEKQIGFHIEKQFGMPSCVCGDVERIKQILVNLIGNAIKFTQHGA-VTFRTHW 350

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
            +      +++ G  I E    ++F+ FV      +R   G GLGL+I ++  +L GG +
Sbjct: 351 QDDVLSVEIEDTGIGIAEQAKSTLFDPFVQADRSSKRNYEGSGLGLAICQNLCHLMGGEI 410

Query: 773 SISSSDEGVTTINCRIPS 790
              S     +  +  IP 
Sbjct: 411 GFRSELGQGSCFHFAIPL 428


>gi|317132921|ref|YP_004092235.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470900|gb|ADU27504.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 476

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 3/228 (1%)

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
           L  AD IKN F+  VS+ELR+PLT I G+ + ++    G  ++   + +  I+  +  L 
Sbjct: 248 LGTADRIKNDFISSVSHELRTPLTAIKGWAETIQGCAPGDTDT-IHKGMRVITDETGRLS 306

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            +V D+LD + + +G  ++    I +   + E     + + H   +         L   +
Sbjct: 307 AMVEDLLDFSRMQSGRFRMAIDKIDILAEMGEAVLMFSDRAHREGLTFIYNEPASLPPMM 366

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
            DR RL Q+F  IL NA  +S  G  V + A          V + G  IP      V  +
Sbjct: 367 GDRNRLRQVFVNILDNAFKYSDAGGVVKVDAIDCGNHVRIIVSDTGCGIPARDLSRVKQK 426

Query: 742 FVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           F        RRG G+GL++ +  + LHGG + I+S +   T +   +P
Sbjct: 427 FFKG--NATRRGSGIGLAVADEIVCLHGGTLEIASEEGKGTAVTITLP 472


>gi|315500524|ref|YP_004089326.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315418536|gb|ADU15175.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 644

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 153/376 (40%), Gaps = 21/376 (5%)

Query: 426 ETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIA 484
           E       +     I+ + + G+    PDG +   N     +       +        + 
Sbjct: 269 EQALRESEERFRLVIEEVRDYGIFALDPDGVVTSWNLGAERIKGWTAPEI--------LG 320

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS---VLEYSIIPLPNAQTM-- 539
              SR+Y +     L A ++    D          L  D         I  L +      
Sbjct: 321 QHFSRFYPDETRDFLPAQMLQRARDRGTVEDEGWRLRKDGSRFWANVVITSLHDDNGQVR 380

Query: 540 ---LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                  ++T+  R+E AL    E    A+  K+ F+   S+ELR+P++ I+GF  LL+ 
Sbjct: 381 GFAKVTRDMTERRRSEEALRMAREDAIAANLAKSEFLSRTSHELRTPMSAILGFGQLLEL 440

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            +  +L++     V+ I  +   LL+L+ND+LD+++++AG   ++   + L+D++ EV  
Sbjct: 441 DE-ETLSTPHRAAVQQIMKAGRHLLSLINDLLDISSIEAGATDMSIEAVDLDDVVQEVHA 499

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             A  +    +  ++ +        ADR+RL+Q+   +++NA  ++  G+ V L   R  
Sbjct: 500 LAAPIVATGGLSFQLDAAEPGLIAQADRRRLIQVLLNLIANAAKYNRTGTCVRLAYGRKG 559

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
            D    V+++G  I       +F  F       + +  G GLGL++ +  +    G +  
Sbjct: 560 DDIRIEVEDDGEGIDPSAASRLFTPFDRLGQQSKTRVEGTGLGLALSKRLVESMSGEIGY 619

Query: 775 SSSDEGVTTINCRIPS 790
             +          +P+
Sbjct: 620 E-APAQGARFWFTLPA 634


>gi|206970639|ref|ZP_03231591.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206734275|gb|EDZ51445.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 357

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 118/242 (48%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+         K+  Y+  
Sbjct: 118 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQEDNFS--EEKRKHYLTI 175

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I +++ 
Sbjct: 176 IETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELEL- 234

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +    +AD++ + Q++  ++ N++ F+  G T+ ++           ++++G  I E
Sbjct: 235 -DLEKVHVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISE 293

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    R+P+
Sbjct: 294 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMPN 353

Query: 791 KE 792
            E
Sbjct: 354 HE 355


>gi|153010009|ref|YP_001371224.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151561897|gb|ABS15395.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 614

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 139/351 (39%), Gaps = 18/351 (5%)

Query: 450 FGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDD 509
              DG +   +     L   +   L     I  +     R    S   DL A   +S  D
Sbjct: 213 LDSDGVVASVDMNSAKLLGVQSKMLEGTALIDRV-HVADRVEYLSLLADLRAGSASSKVD 271

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEI- 568
            R      L  + +    +    L  A +      V  S+  E+ L ++   L+   E  
Sbjct: 272 VR------LRSIENGDTVFRTYRLEGAASARAITLVGRSLEGEQKLLDEIATLKAELESE 325

Query: 569 ---KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLV 624
              K   +  VS+ELR+PL +IIGF+D+L     G L N KQ +Y   I  S   LL LV
Sbjct: 326 RIGKGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLANEKQREYAGLIHQSGHYLLELV 385

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           N +LD + ++ G   ++       D        +  +  +  +         +G  VADR
Sbjct: 386 NAVLDNSRLETGNYSIDPQNFAFRDAAEMCTSVMLPQAEKKGVAFCHRVGAGIGELVADR 445

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAAR----DNGDFIFSVKNNGSSIPEDMCKSVFN 740
           + + QI   + SNA+ F+  G  V + A R           SV + G  I  +  + +  
Sbjct: 446 RAIQQILLNLASNAVKFTQSGGCVTIDATRVMASGRAMLEISVSDTGIGIEPEDMQRIGT 505

Query: 741 RFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            FV   +     + G GLGLS+V+  + LH G + + S     T +  R+P
Sbjct: 506 PFVRADNNYTRAQEGSGLGLSVVKGLVELHQGSMQLKSCPGEGTIVTIRLP 556


>gi|309787597|ref|ZP_07682209.1| sensor protein evgS [Shigella dysenteriae 1617]
 gi|308925175|gb|EFP70670.1| sensor protein evgS [Shigella dysenteriae 1617]
          Length = 1139

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 171/423 (40%), Gaps = 15/423 (3%)

Query: 381 VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGT-----IWMFENLTVQVDLETKYNTLVKV 435
             K      DTW L + Q   V   S    G+      ++  ++  +  ++      +  
Sbjct: 460 WIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRREVIQGDLENQISF 519

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
           +    D L     V    G +   N AF   + T +   +    + N  +     ++ + 
Sbjct: 520 RKALSDSLPNPTYVVNWQGNVISHNSAFEHYF-TADYYKNAMLPLENSESPFKDVFSNTH 578

Query: 496 GWDLFAAIITSFDDERKSLQGTLEL--LSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
                     +   +   +   +E   ++      ++    +A  +  + ++T++     
Sbjct: 579 EVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIH 638

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL  +      A   K+ F+  +S+E+R+P+++I+GF +LL  S L     ++ + +   
Sbjct: 639 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSK--EQRVEAISLA 696

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            A+   LL L+ +ILD+  +++G  +L    + +  L+     S        +I +   S
Sbjct: 697 YATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSS 756

Query: 674 D-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR-DNGDFIF--SVKNNGS 728
              +      D Q   Q+ S +LSNA+ F+++G+  +       D+   +   ++ ++GS
Sbjct: 757 TFPEHYLVKLDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGS 816

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + ++  + +F R+   +   Q+ G GLGL I +  I    G +S+ S     TT    I
Sbjct: 817 GLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITI 876

Query: 789 PSK 791
           P +
Sbjct: 877 PVE 879


>gi|254520256|ref|ZP_05132312.1| sensor histidine kinase/response regulator [Clostridium sp.
            7_2_43FAA]
 gi|226914005|gb|EEH99206.1| sensor histidine kinase/response regulator [Clostridium sp.
            7_2_43FAA]
          Length = 1079

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 5/244 (2%)

Query: 553  RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL---LKTSKLGSLNSKQSQY 609
            +   E  + L K ++ KN++  ++S+ELR+PL  II    L   L          K   Y
Sbjct: 833  KENKELYDKLIKNEKYKNNYFVNLSHELRTPLNVIISTQQLITKLNEEDKDIPKEKILYY 892

Query: 610  VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +  +  +S  LL L+N+I+D + +++G  KL      +  L+ E+  S+   +  N I +
Sbjct: 893  MSTLRRNSDRLLKLINNIIDTSKIESGSYKLIIEKHDIVYLVEEIVLSMKDFIEANGIEL 952

Query: 670  KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
             +  D +      D   + +    ++ NA+ F+ +G  + ++    N     SVK++G  
Sbjct: 953  VIDPDVEEKIIECDGSEIEKCIVNLVGNAVKFTPRGGKIEVRIVDLNNKVKISVKDSGIG 1012

Query: 730  IPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
            I +    ++F+RF         +  G GLGL++ +  + LH G + + S     +     
Sbjct: 1013 IEKKYHDAIFDRFGQAYNDVSEEHGGSGLGLTVTKQLVTLHNGRIFVKSEPGHGSEFVII 1072

Query: 788  IPSK 791
            +P K
Sbjct: 1073 LPVK 1076


>gi|94265928|ref|ZP_01289654.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93453514|gb|EAT03922.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 634

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 109/632 (17%), Positives = 228/632 (36%), Gaps = 58/632 (9%)

Query: 181 TTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEG------IVFQ 234
                 +L      +  LF+         D  G I  AN ++      E        +  
Sbjct: 1   MRDTQNQLEESKQSYARLFNDAPIGYLVLDPNGVIDNANETFAVMVGQEHLKLYGKALSN 60

Query: 235 KAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIA-- 292
                 R  F  + +      +  E NF    +  +       ++    ++  E G++  
Sbjct: 61  FIAAGDRVSFNGQFRAFFAQPNGKELNFRIQGAQGDMVVRCVGRLTGNSSTQSEDGVSQR 120

Query: 293 -----IDVSKEITVNDQLTHTYEILHNLTVAIAIFDQN-RYLQFHNRSFVELWEID---- 342
                 D+S ++    Q    + +  +  V+I I D +   +   N    + + +     
Sbjct: 121 LLLVVRDISAQVQAQMQF---HTLFQDTPVSIIIQDPDSGEIIDANPMAWQQYGLSSLNE 177

Query: 343 ----LAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ 398
                 +L    S  ++  ++R AN+   Q          F      +     W      
Sbjct: 178 LKTHEFWLEPPYSFADVQAWMRKANREGTQK---------FEWLSRKKNGDLLWEEVQLT 228

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKY---NTLVKVQGETIDHLSEGVAVFGPDGR 455
           T+        +G  +    ++T +   E +    NTL+  Q ET      GV +   +  
Sbjct: 229 TIRYRG----QGAILVTGIDITERKRAEEELWDKNTLLATQHET---SPYGVLIVDNNRD 281

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
               N  F +LW+  ++ L+     + +     +    SD    F  I+  +++ +    
Sbjct: 282 TLSFNRHFATLWRIPDDILAEQNSFKALEYVLPQL---SDPDAFFTEIVVLYENRQTEEF 338

Query: 516 GTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
             + L     LE    P+ + +      +  ++++T+  RAE  L +++  L +++    
Sbjct: 339 KEIALRDGRTLERFSYPMFSDEGSYRGRIWYYLDITERKRAEEELRKRSAELARSNAELE 398

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F   VS++LR PL  I  +  LLK +    L+ +  + +   +     +  ++  +L+ 
Sbjct: 399 QFAYVVSHDLRQPLRRINSYMQLLKRAPNDQLDDESREMMGLAAGGVQRMDQMLVSLLEY 458

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           + V  G      + +   + ++E    +  +++E N  + +   G     VA R    ++
Sbjct: 459 SRV--GRKGEPMAPLASREAVDEALDFLVPEINETNATVHI--SGDWPEIVASRDEFTRL 514

Query: 691 FSKILSNAMDFSSKGST--VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
           +  ++ NA+ +        V +     +GD+ FSV +NG  I       +F  F     R
Sbjct: 515 WQNLIGNALKYCGLDRVPEVEIAVTPGDGDWRFSVADNGIGIDPQQFDRLFKVFQRLHTR 574

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            Q  G G+GL++    +  HGG + + S   G
Sbjct: 575 DQYEGTGIGLAVARKIVERHGGRIWVESQGAG 606


>gi|309789879|ref|ZP_07684457.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228086|gb|EFO81736.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 385

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 136/324 (41%), Gaps = 14/324 (4%)

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
               H+R ++    +    ++       I    D +  +L G + L      E S+ P+ 
Sbjct: 65  DQQRHLRFVSPAAMQMLGVNEPSLHQGMITIMRDHQADTLVGEV-LHDGEPREMSMRPIS 123

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + +T+  + +      A   + +  + L   +  +   V +VS+ELR+PL ++    + +
Sbjct: 124 SGRTLRLYASPLQGGGALLIIRDVTQ-LSMLERSRRDLVANVSHELRTPLASLKLLVETV 182

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           ++S    +     + +E ++     +  LV+++ DLA +++G + L  + + +  ++   
Sbjct: 183 QSSPPPDV---AHRMLEQMAQEIDSVTQLVDELHDLAQIESGRVSLKLAPLPIGPVIERA 239

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            + +  +     + +         + + D  R+ QI   +L NA+ F+++G +V ++   
Sbjct: 240 LERMRPQADRKGLTLGAEVPNGAQAVLMDPNRVGQILLNLLHNAIKFTAEGGSVQIRVRL 299

Query: 715 DNGD-------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFI 765
              D        + SV + G  IP      +F RF        R   G GLGL+I +  +
Sbjct: 300 VGEDAGQAGPWLLVSVCDTGVGIPATDLPRIFERFYKVDRARTRHAGGTGLGLAIAKHLV 359

Query: 766 NLHGGHVSISSSDEGVTTINCRIP 789
             HGG +   S +   +T    +P
Sbjct: 360 EGHGGRLWAESVEGRGSTFAFTLP 383



 Score = 41.1 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 323 DQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY 382
           DQ R+L+F + + +++  ++   L        ++  +R                 +  V 
Sbjct: 65  DQQRHLRFVSPAAMQMLGVNEPSLHQG-----MITIMRDHQAD----------TLVGEVL 109

Query: 383 KSSETHKD-TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
              E  +     + +G+TL +  +    GG + +  ++T    LE     LV
Sbjct: 110 HDGEPREMSMRPISSGRTLRLYASPLQGGGALLIIRDVTQLSMLERSRRDLV 161


>gi|90022560|ref|YP_528387.1| Cache sensor hybrid histidine kinase [Saccharophagus degradans
           2-40]
 gi|89952160|gb|ABD82175.1| Cache sensor hybrid histidine kinase [Saccharophagus degradans
           2-40]
          Length = 779

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVL-----EYSIIPLPNAQTMLTFVNVTDSVRAER 553
             A ++ + +   K      +++ DS+        +I P+   Q       V        
Sbjct: 330 FIACMLIALELLLKPFHSVTKIIRDSIQTSDDDRITIKPIEYDQKNEFSAVVDALNIVYH 389

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            +    + L +A++ K +F+  +S+E+R+P+  I+G+  +L  +    +       ++ I
Sbjct: 390 QINRYTDELDQANKAKTTFLATMSHEIRTPMNAILGYAQIL--TSDADIPDSHQDTLKAI 447

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             +   LL+L+ND+LD+  +++G M L Y  + + D++  + +  + +  +  +      
Sbjct: 448 EGAGKHLLSLLNDVLDITKIESGGMILYYENVYVRDMIESLDKVFSVRCQQKKLDWSSEI 507

Query: 674 DGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           D         DR +L QI   +L N++ F+  G  V L+AA +N   I ++ + G  I  
Sbjct: 508 DIPEEYIACVDRAKLNQIAFNLLGNSVKFTEHG-RVHLEAAIENDHLILTIIDTGPGITP 566

Query: 733 DMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F  F       ++ G GLGL+I++  + L GG V +  +    +     IP 
Sbjct: 567 ENQQKLFTPFYQGQAGFEQGGTGLGLAIIQKLVELMGGTVGLKDTSALGSIFEVDIPL 624


>gi|228994818|ref|ZP_04154616.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM
           12442]
 gi|228764926|gb|EEM13682.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM
           12442]
          Length = 449

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 122/239 (51%), Gaps = 6/239 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  + LR +++++  FV +VS+E +SPL++I GF+  L+T+ L    S+Q+ Y+E I +
Sbjct: 205 RKMAKRLRNSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDL--TKSEQTHYLEIIES 262

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  + +L   +L LA++D   + L   +  L + + +    +  +       + V  D 
Sbjct: 263 ESRRMSSLCKQLLILASLDKEDLTLRKQSFDLGNQIKDTIFMLEWEWRTK--ELAVEMDV 320

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                  D   L Q++  + +N++ F+  G T+  +A     ++  S+ + G  IPE+  
Sbjct: 321 PNMQIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEI 380

Query: 736 KSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           K +F+RF  V  A      G GLGLSIV+  I+LH G +++ S     T  +  +P ++
Sbjct: 381 KKIFDRFHKVDTARNRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTIFSIYLPKQQ 439


>gi|229029685|ref|ZP_04185760.1| hypothetical protein bcere0028_17720 [Bacillus cereus AH1271]
 gi|228731627|gb|EEL82534.1| hypothetical protein bcere0028_17720 [Bacillus cereus AH1271]
          Length = 345

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 118/242 (48%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 107 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 164

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++       +T  L+  L ++  +      E  I + + 
Sbjct: 165 IETETTRLSKLSQNLLKLTLLESEEYTPEKTTYRLDQQLKQIVLNSEPLWAEKEIELDL- 223

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +     ADR+ + Q++  ++ N++ F+S G T+ ++           + ++G  I E
Sbjct: 224 -DLEKVHITADRESMSQVWINLIHNSIKFTSSGGTITIQLQEHEKVVEVRISDSGIGISE 282

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T     IP+
Sbjct: 283 EQKQHIFERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIPN 342

Query: 791 KE 792
           +E
Sbjct: 343 QE 344


>gi|158336996|ref|YP_001518171.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
 gi|158307237|gb|ABW28854.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
          Length = 658

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 100/662 (15%), Positives = 211/662 (31%), Gaps = 56/662 (8%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
           S D +  +LAE   +  +     S  +   + +  L    D  G  +  N +Y  +    
Sbjct: 10  STDVVQRQLAEIQQQQSQQQRFYSALQSAMEGIAQL----DPQGCFMEVNRTYAHDVGY- 64

Query: 230 GIVFQKAIGESRKLFKEEIK---KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNS- 285
                  +     +F  +I              K   E     + G     ++  V N  
Sbjct: 65  SPEELVGLPWQTTVFANDIPILESAYNIMLDTGKISVEARGATKQGAVFYQQLTMVANRN 124

Query: 286 -----FGEAGIAIDVSKEITVNDQLTHTYEILHNLTVA----IAIFDQNRYLQFHNRSFV 336
                 G      ++S       +   + +    +       I + DQ     + N  ++
Sbjct: 125 DQGEFLGHFCFMQNISDRKLAEVKRIESEQRFQAIADCSSTLIWVADQRNQRTYFNAEWL 184

Query: 337 ELWE------IDLAFLATNPSND------ELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
           +         I+  +       D                 +  +  +     +   +  S
Sbjct: 185 KFTGRSLKREIEEGWATGIHPADVHDCLAAFALAFEEQRSVQLEYRYLNHAGHYRWLLDS 244

Query: 385 SETHKDTWHLPNGQTLHVIVTSNP-----------RGGTIWMFENLTVQVDL----ETKY 429
                    LPNG+ +  + +                    + EN+   +D       + 
Sbjct: 245 GRP----RFLPNGEFVGYVGSCIDITPFKQVADSLEQANYQLQENINKSIDALVGANAQL 300

Query: 430 NTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSR 489
                      D L   + V   +      N  +++       + +    +  I      
Sbjct: 301 EESEARFRSLADSLPALIWVCDTEQLCTYVNQTWQTFTGRSLEQETNLGWLDTIHPDDRP 360

Query: 490 YYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
            + +         I    +  R    GT   + ++ +    I    A  +   +++T S 
Sbjct: 361 RFIDQLQTCFSEEIPLHLEYRRCDRNGTYRWILNTGIP-RYIADQFAGMIGCGLDITVSK 419

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + + AL +    L +++     F    S++LR PL  I  F++LL       ++    +Y
Sbjct: 420 QNQVALEQAISELTRSNRDLEEFAYVASHDLREPLRKIRSFSELLVEDYADQIDDTGRRY 479

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            +Y+   +  +  LV  +L  + V  G  +     + LN ++ ++    +  + +    I
Sbjct: 480 FDYVIDGAARMDALVQSVLQYSRV--GRQQEIPEPVDLNTVVQQIANDFSLVIEQKQGWI 537

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS-KGSTVILKAARDNGDFIFSVKNNGS 728
                 +L + +  +   +Q+F  ++ NA+ F   +   + +KA R    +  SV + G 
Sbjct: 538 IYD---ELPTIIISKIESVQLFQNLIGNALKFHGVQPPHITVKAQRQGTHWQISVSDTGI 594

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            I  + C  VF  F     R Q  G G+GLSI    +  +GG +   +     TT    +
Sbjct: 595 GIAPEFCDRVFTMFARQHQRDQYPGTGIGLSICRKIVENYGGQIHFETEVGKGTTFIFTL 654

Query: 789 PS 790
           P+
Sbjct: 655 PA 656


>gi|87306646|ref|ZP_01088793.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87290825|gb|EAQ82712.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 704

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 140/318 (44%), Gaps = 21/318 (6%)

Query: 484 AATCSRYYNESDGWDL------FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            A  SR Y+++   +L       A +I +  +ER  L  T E L D++ E         Q
Sbjct: 220 IANRSRGYDDTLIDELRPLLTTVAQLIVAMKNERSRL-ATEERLWDTLDELV------EQ 272

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD-LLKT 596
                    +       L E       ++  K+ F+ ++S+E+R+P+T ++GF D LL+ 
Sbjct: 273 RSRVQEYAAELEVKNHELEESRRRAEASNLAKSEFLANMSHEIRTPMTAMLGFADVLLED 332

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             +      +   +  I  +   LL L+NDILD++ ++AG + +         ++ EV  
Sbjct: 333 GDIQKAPKSRIDVIRTIQRNGIHLLGLINDILDVSKIEAGKLAVEQVQCRPAAIIKEVLS 392

Query: 657 SIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
            +  +  ++ + +K+  + +     ++D  RL QI   ++ NA+ F+ +GS    V    
Sbjct: 393 LMQVRAEQSQVELKLRYETETPQEILSDPTRLRQILMNLIGNAIKFTEEGSVTLAVRFIE 452

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGG 770
           + +     F V + G  +  +  +++F  F        RR  G GLGL+I      L GG
Sbjct: 453 SPEWPMLEFDVIDTGIGMTLEHQQNLFQPFSQADSSMSRRFGGSGLGLAISLRLAGLLGG 512

Query: 771 HVS-ISSSDEGVTTINCR 787
            VS + S+    +T   R
Sbjct: 513 DVSLVQSTPGTGSTFRFR 530


>gi|291537898|emb|CBL11009.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 478

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 119/261 (45%), Gaps = 5/261 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           N +  +   +  +      +L      L   +E +  FV +VS++ RSPLT+I G+ + +
Sbjct: 215 NFEAKIDVHSNDEIGYLAASLNYMANELNTLEEDQRKFVSNVSHDFRSPLTSIKGYVEAM 274

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               +      Q +Y+  I   +  L  L   +L+L    +  + L+ ++  +N  +   
Sbjct: 275 LDGTIPV--EMQDKYLNIILFETERLNKLTKSLLELNKFGSHGVMLDITSFDINHTIRMT 332

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
            Q+      E +I   +I  G+     AD  ++ Q+   ++ NA+ FS   S + ++   
Sbjct: 333 VQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYNLIDNALKFSLANSAITIETTE 392

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHV 772
            N     SVK+ G  IP+D  K +++RF          ++G GLGLSIV+  I  HG ++
Sbjct: 393 KNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENI 452

Query: 773 SISSSDEGVTTINCRIP-SKE 792
           +  S++   T     +P +KE
Sbjct: 453 NCISTEGVGTEFIFTLPLAKE 473


>gi|307728423|ref|YP_003905647.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307582958|gb|ADN56356.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 1488

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 102/608 (16%), Positives = 215/608 (35%), Gaps = 69/608 (11%)

Query: 229  EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCET--VSTLEHGNNKS-YKIVRVLNS 285
            E      A+          I + +++    EK       V+    G  K     VR+L  
Sbjct: 485  ESDALDFAVRADLAPLAGLIDRALLAMPPAEKQRIRRNWVTGNAVGTGKWSVSAVRLLPV 544

Query: 286  FGEAGIAIDVS--KEITVNDQLTHTYEILHNL--------------TVAIAIFDQNRYLQ 329
                G+A+ V+    + +  ++    +    L                 +   D      
Sbjct: 545  LIGVGVALLVTLRAYLLLQREVRRRKKTERELALQLNFQETMMKMVPYPLVAQDLQGRYI 604

Query: 330  FHNRSFVELWEIDLAFLATNPS---------NDELLEFLR-SANKLPEQLNWKTWKENIF 379
              N ++ +        +    +         N E+L+ +R    +  +    +   E   
Sbjct: 605  AVNGAYEQACGHSREAVLGRTTMEVQTWGEVNSEVLDNMRRDLLEGGDTAQVELQFERAP 664

Query: 380  SVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGET 439
               +            +GQ +           ++    ++T     E +     +   + 
Sbjct: 665  GDLRHGLFWTSICRGNDGQPV----------CSLGTMVDITDIRRAEMRARDTERRLFDV 714

Query: 440  IDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDL 499
               L    AV     R      +F  +    +  L  G     I      + +       
Sbjct: 715  TRSLP---AVVFQLRRTPEGAYSFPYIGGAPQLLLGAG----QIRPAGRDHADFERICSE 767

Query: 500  FAAIITSFDDERKSLQGTL----ELLSDSVLEYS---IIPLPNAQTMLTFVNVT-----D 547
              + + +  +    L+  L     +  +  L+++   ++P   A   + +         +
Sbjct: 768  DRSFVIAELERSARLETPLLIEFRMGPEQALKWTRAELVPRREADGSVVWSGYWVDASIE 827

Query: 548  SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
              RAE  L    +    A   K+ F   +S+E+R+P+  ++G  ++L+ +    LN+ Q 
Sbjct: 828  HARAE-ELARARDVAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVLERT---PLNADQG 883

Query: 608  QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
            + +  I  S+  LL +++D+LD + ++AG + +    I L +L++     +A + HE  +
Sbjct: 884  EMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAEPIDLRELVDNAVGLLAGRAHEKGL 943

Query: 668  RIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFS 722
            +++V     +  +   D  RL Q+   +L NA+ F+ +G   +  +  ++ D        
Sbjct: 944  KVRVDIAPDVAATLRGDSVRLRQVLFNLLGNAIKFTPEGKVEVSVSVVEHTDAQQTIEMV 1003

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
            V++ G  I  D+   +F  FV       RR  G GLGL+I    I L  G +++ S    
Sbjct: 1004 VEDTGIGIAADVQAKLFEPFVQAESSTTRRFGGTGLGLTICRKLIELMNGSLTLDSELGR 1063

Query: 781  VTTINCRI 788
             T +  R+
Sbjct: 1064 GTRMTVRL 1071



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/175 (9%), Positives = 52/175 (29%), Gaps = 21/175 (12%)

Query: 160 SGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWAN 219
            G    + + +   +  E+       ++L+  ++  + +   + + +  +D  G  +  N
Sbjct: 548 VGVALLVTLRAYLLLQREVRRRKKTERELALQLNFQETMMKMVPYPLVAQDLQGRYIAVN 607

Query: 220 ISYKKNTETEGIVFQKAIGE-----------SRKLFKEEIKKRMISSSALEKNFC-ETVS 267
            +Y++         +  +G            + ++     +  +      +     E   
Sbjct: 608 GAYEQACGH---SREAVLGRTTMEVQTWGEVNSEVLDNMRRDLLEGGDTAQVELQFERAP 664

Query: 268 TLEHGNNKSYKIVRVL--NSFGEAGIAIDVS----KEITVNDQLTHTYEILHNLT 316
                      I R          G  +D++     E+   D     +++  +L 
Sbjct: 665 GDLRHGLFWTSICRGNDGQPVCSLGTMVDITDIRRAEMRARDTERRLFDVTRSLP 719


>gi|153854057|ref|ZP_01995390.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814]
 gi|149753439|gb|EDM63370.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814]
          Length = 470

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 4/238 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L   +  LR  ++ +  FV +VS++ RSPLT+I G+ + +    +        +Y++ I 
Sbjct: 232 LNYMSSQLRDMEDYQKKFVANVSHDFRSPLTSIKGYVEAMTDGTIPP--ELHEKYLKIIL 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L +L  D+L L   D   + LN     +++++  V  S      +  I I+++  
Sbjct: 290 FETERLTDLTQDLLTLNEFDTNHLLLNREVFDIHEMIKHVAASFEGVCTQKKISIELVFA 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            K  +  AD++++ Q+   +L NA+ FS   S V ++          SVK+NG  IP   
Sbjct: 350 TKHLNVNADKRKIQQVLYNLLDNAIKFSDPNSIVTIETTDRGEKVYTSVKDNGMGIPRSA 409

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              ++ RF  +       ++G GLGL+IV+  I  HG ++++ S++   T  +  +P 
Sbjct: 410 LGKIWERFYKSDLSRGKDKKGTGLGLAIVKEAIQAHGENITVVSTEGVGTEFSFSLPK 467


>gi|222056645|ref|YP_002539007.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565934|gb|ACM21906.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 1001

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 99/655 (15%), Positives = 218/655 (33%), Gaps = 68/655 (10%)

Query: 179 AETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA-- 236
            E     KKL     +F+  F +    +      G     N +Y +    +     +   
Sbjct: 369 TELESLSKKLRESEELFREFFANAPIGLAIFGLDGRFQEVNQAYCRIIGYDREEVFQPGF 428

Query: 237 ----IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV--LNSFG--- 287
               +     + +   +   +        F E  +  + G+    ++      +  G   
Sbjct: 429 TFMKVTHHDDIEENLAELNRVLKGETSSFFIEKRNIRKDGSIIWVRVSATQCRDPEGKSA 488

Query: 288 -EAGIAIDVSKEITVNDQLT----HTYEILHNLTVAI--------AIFDQNRY-LQFHNR 333
               I  D+       + L     +   I  +    +        AI D N+  L+ +  
Sbjct: 489 RLIAIVEDIHDRKQAEEALRVSEANYRTIFDSANDGLFIQCAESGAILDVNQRVLEMYKY 548

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
            + E+  +++  L+   +       +    +                   S E     W 
Sbjct: 549 RYDEILRLNIGELSAYSAGYTQERAMEVGRR-----------------AASGEPQLVEWL 591

Query: 394 L--PNGQTLHVIVTSNP--RGG---TIWMFENLTVQVDLETKYNTLVKVQGETIDHL--- 443
               +G    V V+      GG    + +  +++ +  +        +    + D L   
Sbjct: 592 ALAKDGTQFWVEVSLKKVILGGKDRLLAVVRDISERKRVLEALQQNEERLRVSEDRLVLA 651

Query: 444 --SEGVAVFGPD---GRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
             + G+ ++  +        SN     L    +           +     RY    +   
Sbjct: 652 QSAAGIGMWNVNLLTRESTFSNQYLSLL--GIDRPPGSYEDFLALLHPDDRYQVMMETDQ 709

Query: 499 LFAAIITSFDDERKSLQ-GTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
             A         R +   G+L  +      +        +      +VTD  +AE  L  
Sbjct: 710 AIAQCRQFQAMFRVNWNNGSLRWIMGRGGVFCDSRQQPLRITGVIFDVTDRKKAEEDLKA 769

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             + L +++     F    S++L+ PL  + G+  LL+     SL+ K   Y+ +    +
Sbjct: 770 AMDELERSNRELEQFAYIASHDLQEPLRMVAGYVKLLERRYKESLDEKAQTYINFAVDGT 829

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
           + +  L+  +L  + +  G   ++   +  N        ++ + + E+N RI       L
Sbjct: 830 SRMQKLIEGLLTYSRISRG---ISLLPVDTNIPFAAALANLDSAIRESNARIT---SETL 883

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSK--GSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
                D  +L+Q+F  +L+N++ +  K     + + A R+  +++FSV++NG  I     
Sbjct: 884 PVVEGDETQLMQLFQNLLANSLKYRKKCIPPQIYVSARREGNEWLFSVQDNGIGIERGYY 943

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F  F     + + +G G+GL+  +  +  HGG + + S     +T    +P+
Sbjct: 944 DEIFQIFRRLHAQDEYQGTGIGLASCKKIVERHGGKIWVESEPGEGSTFFFTMPA 998


>gi|52842393|ref|YP_096192.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629504|gb|AAU28245.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 828

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 177/392 (45%), Gaps = 26/392 (6%)

Query: 419 LTVQVDLETK-----YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           LT Q++ ++K        + +     I  +   V     +      +     L       
Sbjct: 132 LTEQINNKSKNTSDYVYAIYRYMENIIAQIPVSVYWMNKNHVYMGCSNNMVKLLNLNSRY 191

Query: 474 LSPGTHIRNIAATCS-RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIP 532
              G    ++    S  YY ++D   +   I  S ++      GT    +  +   + +P
Sbjct: 192 DIVGKTYEDLYHEKSTSYYKKADKIVMDKGISLSLEEPFYCPDGT----TKEIYLSNKVP 247

Query: 533 LPN-----AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           L +        +   V++TD  + E  L++  EA  +A+ +K  F+ ++S++LR+PL+ +
Sbjct: 248 LRDLEGKIIGMLGVSVDITDRKKMELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSGV 307

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM-KLNYSTIV 646
           +G  +L+K      +   Q QY E+I   S  LL+L++ ILD+ ++      +L  +T  
Sbjct: 308 VGMAELMKEQVTDPV---QVQYAEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTFD 364

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKG 705
           +N+ + E+       +    + + V  D K+   +  DR +L +I   +L NA+ F+  G
Sbjct: 365 INECIAELVHLEMPSIKLKQLDLIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDSG 424

Query: 706 STVI----LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLS 759
              I    L+   ++G   F++ + G  IPE+    +F+RF     +  G+ +G G+GL 
Sbjct: 425 YIAIDVKLLELNNESGLIYFAISDTGIGIPENQQTKIFDRFHRIIPSSIGKYKGHGVGLH 484

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           IV+S++NL GG + ++S     TT    +P +
Sbjct: 485 IVQSYVNLLGGEIQVNSEPGVGTTFYFELPIQ 516


>gi|56461210|ref|YP_156491.1| phosphate regulon sensor histidine kinase [Idiomarina loihiensis
           L2TR]
 gi|56180220|gb|AAV82942.1| Phosphate regulon sensor histidine kinase (contains PAS domain)
           [Idiomarina loihiensis L2TR]
          Length = 431

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 145/365 (39%), Gaps = 32/365 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATC 487
               L++   E  + L +   VF  DG +  SN   +  +                    
Sbjct: 92  ALARLLRRFREAAEALPDAAIVFRADGALLWSNKLAQFYFGLRWPD-----------DAG 140

Query: 488 SRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD 547
            R  N     + +A +     DE  ++   +    D  +E  I+P    Q +L   +VT 
Sbjct: 141 QRLSNLIRHPEFYAYLNAGNFDEELTIPSPIRESLD--IEIRIMPYSEDQFLLVARDVTQ 198

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             R E               ++  FV +VS+EL++PLT + G+ +++      +  +   
Sbjct: 199 VKRLE--------------NLRREFVANVSHELKTPLTVLQGYLEMM-DEPQQTPPAMLK 243

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
           + VE ++A ST + NLV+ +L L+ ++     +    + +  LL +++            
Sbjct: 244 KAVENMNAQSTRMANLVDQLLTLSRMETPSNDVFDHEVDMPALLEQLESEAKRLNEVKQH 303

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           +I+   D            L      +++NA++++  G  + +      G   FSVK+NG
Sbjct: 304 KIEF--DVAPVRIYGKENLLRSAMQNLITNAINYTPDGGEIKVTWKTVAGGVEFSVKDNG 361

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +    +  RF    +       G GLGLSIV+  I  H   + I+SS E  +  +
Sbjct: 362 KGIAAEHLPRLTERFYRVEDDRNSASGGTGLGLSIVKHAIEHHNSQLDINSSLEKGSRFS 421

Query: 786 CRIPS 790
            RIPS
Sbjct: 422 FRIPS 426


>gi|238789735|ref|ZP_04633517.1| Aerobic respiration control sensor protein arcB [Yersinia
           frederiksenii ATCC 33641]
 gi|238722094|gb|EEQ13752.1| Aerobic respiration control sensor protein arcB [Yersinia
           frederiksenii ATCC 33641]
          Length = 778

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 144/371 (38%), Gaps = 14/371 (3%)

Query: 422 QVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
           +   + +      +    +D   + V            N A   L    E +L   T   
Sbjct: 143 REQAQVELGQQSALLRSFLDASPDLVYYRNEANEFSGCNRAMELLTGKSEKQLVGLTPKD 202

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLT 541
             A   +    E+D       +  +++       G       +  E   +P  +      
Sbjct: 203 VYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKRH 257

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
            +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++   
Sbjct: 258 GLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE--- 312

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+S+Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     + +++      
Sbjct: 313 LDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSGLL 372

Query: 662 MHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
           +    ++  +     L    + D  RL QI   ++ NA+ F+ +G  V+      +   I
Sbjct: 373 VQPKGLKFIMEPQLPLPEKIITDGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGSDRLI 432

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHR---GQRRGVGLGLSIVESFINLHGGHVSISSS 777
           F V+++G  IPED    +F  +             G G+GL++ +      GG +++ S+
Sbjct: 433 FEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITVKST 492

Query: 778 DEGVTTINCRI 788
               +     I
Sbjct: 493 QGAGSCFTLTI 503



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 61/154 (39%), Gaps = 19/154 (12%)

Query: 168 ILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE 227
           +  +D +  E+        +L    ++ +   D+   LV++R++A +    N + +  T 
Sbjct: 130 LQVVDKLKEEMGHREQAQVELGQQSALLRSFLDASPDLVYYRNEANEFSGCNRAMELLT- 188

Query: 228 TEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKI 279
             G   ++ +G   + ++  +I ++++ +   EK F   VS           G    +++
Sbjct: 189 --GKSEKQLVGLTPKDVYAPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 280 V------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
                  RV    G  G   D+++     D L +
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 1415

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 5/242 (2%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
           A +    + EAL + D  K +F  +VS+E R+PLT ++   +  +      +  +Q   +
Sbjct: 341 AYQEERRRAEALAEIDRAKTAFFSNVSHEFRTPLTLMLSPLE--EALGRDGIADEQRTLL 398

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                +   LL LVN +LD A ++AG +  +++ + L+    E+  +  + +    +R  
Sbjct: 399 GIAHRNGLRLLKLVNTLLDFARIEAGRVTAHFTPVDLSSFTAELASNFRSALDRAGLRFV 458

Query: 671 VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDNGDFIFSVKNNGSS 729
           + +         DR    +I   +LSNA  F+ +G   V +    D    +  V + G+ 
Sbjct: 459 IEAPPLPQPVYVDRDMWEKIVLNLLSNAFKFTFEGEIVVRVGPDPDGRHAVIEVSDTGTG 518

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IPE     +F RF  V  A      G G+GL++V+  I LH G + + S     +T    
Sbjct: 519 IPEAEIPHLFERFRRVEGARGRSIEGSGIGLALVQELIKLHSGSIDVESEIGRGSTFRVT 578

Query: 788 IP 789
           +P
Sbjct: 579 LP 580



 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 107/696 (15%), Positives = 211/696 (30%), Gaps = 59/696 (8%)

Query: 127  LSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCK 186
            L +A   L + G + DL A +       +    +G    L       +   +A       
Sbjct: 608  LDEAIGWLDEGGDA-DLPAASGAQDLGIVSAPAAGRPHILLADDNHDMRDYVARLLGDAY 666

Query: 187  KLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK-AIGESRKLFK 245
            ++         L       V  R     +    +           +    A+ +   +F 
Sbjct: 667  EVEAVGDGVAAL-----EAVKKRRPDLVLSDVMMPRLDGLGLLKALRSDPAVADLPVIFL 721

Query: 246  EEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS--KEITVND 303
                        LE    + +S          ++   L++      A+            
Sbjct: 722  SARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTAAIRRTALRTEYALRQEAQA 781

Query: 304  QLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSAN 363
               H   IL +++      D+     + N +   L       L      D     L +  
Sbjct: 782  ARQHAEGILASISDGFIALDEQYRFTYVNAAAERLIASTAGELIGKVYWDVYPMMLGTK- 840

Query: 364  KLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQV 423
               EQ   +   E +   ++S       +H P+ +   + V           F ++T Q 
Sbjct: 841  --IEQAYRRAMTERVACEFES-------YHPPSKRWFELRVAPTNGKSISVYFRDITEQK 891

Query: 424  DLETKYNTLVKVQGETIDHLSEGV------------------AVFGPDGRIKLSNPAFRS 465
              E     + +   E +   +  +                  A+   DG +  +N    +
Sbjct: 892  KAEAALRDINEQLEEQVAERTAELQQKEARLRTIFAASYTYQALLDVDGVVLDANRTSLA 951

Query: 466  LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSV 525
                +   +             +    E    D+  A++ + +  R+ L   L       
Sbjct: 952  GIGGQLEDVIGKPVWATPWFGSTPGLPEMIRSDI--AVVAAGETVRRELHVNLPAGGWRW 1009

Query: 526  LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
             +  + P+ + Q  +  +        ER   E+     +  E        V+++  + LT
Sbjct: 1010 FDLQMRPVQDPQGQVIAIVPEAVDITERRKAEEAFRQAQKMEAIGQLTGGVAHDFNNMLT 1069

Query: 586  NIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTI 645
             I    DLL+  +L     +  +YV+ IS ++     L   +L  A         N    
Sbjct: 1070 VIRSSADLLRRRELPP--ERVRRYVDAISDTADRAAKLTGQLLTFAR----RHAQNREVF 1123

Query: 646  VLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG 705
               + + +V   + T +    +   +    +     AD  +       +++NA D     
Sbjct: 1124 DAAEHIEDVSDMLKTALGSRAV-FNLDIAERPLPVEADTNQFDAALVNLVANARDAMDGH 1182

Query: 706  STVILKAARD-----------NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGV 754
             T+ +   R             G    S+ + G  IP +  + +F  F +    G  RG 
Sbjct: 1183 GTLTVSVTRSAPTPQEAAAGSRGFVEVSIADTGCGIPREQIERIFEPFFTTKDIG--RGT 1240

Query: 755  GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
            GLGLS V  F+   GG +++ S+    TTI  R+P 
Sbjct: 1241 GLGLSQVYGFVQQSGGTINVDSAIGCGTTITLRLPL 1276


>gi|317474841|ref|ZP_07934111.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316908979|gb|EFV30663.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 1179

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 8/230 (3%)

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
           ++  E+K  F  +VS+ELR+PLT I G    LKT    +L+ K  +YVE +  ++  +L 
Sbjct: 651 QRLSELKIRFFTNVSHELRTPLTLIQGPIQELKTE---ALSVKGKKYVELMEKNTLHMLK 707

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           LVN ILD   +  G M+L+ S   L +LL   ++       E  I ++   + +      
Sbjct: 708 LVNQILDFRKIQNGKMRLHVSCFNLTELLAFFEKEFMIMAEEKAINLQFCPEVEELMVWG 767

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
           D++RL  +   +LSNA  F+S G ++ +    A D       V++ G  IP++    +F 
Sbjct: 768 DKERLGTVVRNLLSNAFKFTSSGGSIRIVSGLAEDGKHCFIRVEDTGVGIPQNKLTEIFG 827

Query: 741 RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           RF    +      +G G+GL++ +  + LH G +  ++  +        +
Sbjct: 828 RFSQADNAKGAYYQGTGIGLALSKEIVELHHGEIFAAN-GKQGAQFTVWL 876


>gi|218129056|ref|ZP_03457860.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697]
 gi|217988691|gb|EEC55010.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697]
          Length = 1458

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 8/230 (3%)

Query: 563  RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            ++  E+K  F  +VS+ELR+PLT I G    LKT    +L+ K  +YVE +  ++  +L 
Sbjct: 930  QRLSELKIRFFTNVSHELRTPLTLIQGPIQELKTE---ALSVKGKKYVELMEKNTLHMLK 986

Query: 623  LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
            LVN ILD   +  G M+L+ S   L +LL   ++       E  I ++   + +      
Sbjct: 987  LVNQILDFRKIQNGKMRLHVSCFNLTELLAFFEKEFMIMAEEKAINLQFCPEVEELMVWG 1046

Query: 683  DRQRLLQIFSKILSNAMDFSSKGSTVILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFN 740
            D++RL  +   +LSNA  F+S G ++ +    A D       V++ G  IP++    +F 
Sbjct: 1047 DKERLGTVVRNLLSNAFKFTSSGGSIRIVSGLAEDGKHCFIRVEDTGVGIPQNKLTEIFG 1106

Query: 741  RFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF    +      +G G+GL++ +  + LH G +  ++  +        +
Sbjct: 1107 RFSQADNAKGAYYQGTGIGLALSKEIVELHHGEIFAAN-GKQGAQFTVWL 1155


>gi|42524251|ref|NP_969631.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39576459|emb|CAE80624.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 557

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 128/296 (43%), Gaps = 19/296 (6%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           D   AI T + D+R       ELL       S+       ++    N  D       L +
Sbjct: 125 DPIGAIGTYWKDQRLPTDEQRELLRALADSVSV-------SIENLNNYND-------LQK 170

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
           + E L++A+  K+ F+  VS+ELR+PL +I+G+ ++L  +  G  ++     +E I  ++
Sbjct: 171 RIEELKEANRSKDEFLMTVSHELRTPLNSIMGWAEILLEASPGDKDA--RLGLETIERNA 228

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
                ++ D+LD + +  G   +    + L D++ +   ++     +  I I++      
Sbjct: 229 RNQTRIIEDLLDSSRILLGRFHMEKKPVDLVDVVTQAVDAVRLMADKKEIHIEIAKGVTT 288

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D +RL QI + +L NA+ FS   S + +   R    F  SVK+ G  +  +    
Sbjct: 289 AMIQGDFERLKQIVNNLLINAIKFSHAQSRIEVAVLRQGPSFTVSVKDEGVGMDAEFIPR 348

Query: 738 VFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRIPS 790
            F RF        R   G+GLGLSI    +  H G +   S+     +  +  IP+
Sbjct: 349 AFERFRQADGSTTRKFGGLGLGLSISRHLVEAHQGTIVAHSAGLGKGSEFSFSIPA 404


>gi|325917509|ref|ZP_08179715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
 gi|325536303|gb|EGD08093.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
          Length = 1149

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/404 (21%), Positives = 168/404 (41%), Gaps = 21/404 (5%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  P+ R+   N
Sbjct: 604  RLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPEMRLTAWN 663

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              ++ L+   +  L  G  + ++    +      +G D+   I       R       E 
Sbjct: 664  RRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFER 722

Query: 521  L--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-----------DE 567
                  V+E     LP    + ++ ++TD  RAERAL + NE L +             +
Sbjct: 723  TRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSREAELAQQ 782

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K  F+  +S+++  PL     F   L+ S     N +Q    E + AS      L++ +
Sbjct: 783  SKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAAEELLDGL 840

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD++ +DAG ++        + L++E+    A       +R++V S  +     +DR+ L
Sbjct: 841  LDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVASSRGLRLQVHS--RPIWVRSDRRLL 898

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
             ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F  F     
Sbjct: 899  RRVMQNFLANALRYTRQG-RIVLGMRGRGALVELQVWDTGPGIPEHHMRQIFEEFRRYQQ 957

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 958  PFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1001



 Score = 84.2 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 71/209 (33%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 561 AHRAFVDQAVLLERELQPTVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 620

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D    L   NR + +L+      L   
Sbjct: 621 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPEMRLTAWNRRYQQLFGYPDGMLYVG 680

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 681 RPVADLIRYNAERGELGEG-DIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 739

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 740 GGYVTSYNDITDYKRAERALLDANENLEQ 768


>gi|237720759|ref|ZP_04551240.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
 gi|229449594|gb|EEO55385.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
          Length = 254

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 127/252 (50%), Gaps = 5/252 (1%)

Query: 543 VNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL 602
           +++ +    E  L E  +   ++D +K +F+ ++S+E+R+PL  I+GF+D++ ++     
Sbjct: 1   MSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGSTYDELS 60

Query: 603 NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
             +++ +V  IS +S  L+ L++DILDL+ +++  +K  YS   L  ++ ++++      
Sbjct: 61  EEERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKE-QVVK 119

Query: 663 HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV--ILKAARDNGDFI 720
           +   I IK +          D  RL Q+    ++NA  F+ +G      +    ++    
Sbjct: 120 NVPEIEIKAVLPDDDIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVC 179

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
             V++ G  IP++  K +F+RF        ++G GLGLSI ++ +    G +S+ S    
Sbjct: 180 LFVEDTGEGIPQECQKEIFDRFYKVNTF--KQGTGLGLSICKTIVEHLQGSISVVSEVGR 237

Query: 781 VTTINCRIPSKE 792
            +     +P ++
Sbjct: 238 GSRFTVTLPLEK 249


>gi|228907030|ref|ZP_04070895.1| hypothetical protein bthur0013_12040 [Bacillus thuringiensis IBL
           200]
 gi|228852621|gb|EEM97410.1| hypothetical protein bthur0013_12040 [Bacillus thuringiensis IBL
           200]
          Length = 463

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 167 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 226

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 227 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEAGR 284

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 285 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 343

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   + +      +K+ G  I  +  +++ 
Sbjct: 344 VMIDEDRMQQVLHNVLDNAIRYTNQNGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLG 403

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV   +++HGG   I S  +  TT+  ++
Sbjct: 404 ERFYRVDKARSRQHGGTGLGLAIVRQIVHIHGGQWQIESEKDTGTTVIIKL 454


>gi|170293890|gb|ACB13025.1| putative histidine kinase sensor/regulator [Hydrogenophaga sp.
           PL2G6]
          Length = 439

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 126/275 (45%), Gaps = 12/275 (4%)

Query: 522 SDSVLEYSIIPLPNA-QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSY 578
           ++ +LE   + L  A + +       +   AER   L    +    +   K+ F+  +S+
Sbjct: 6   AERLLEEKSLALFQANRALQQLAEDLEQQVAERTAELQMALDRAEASTRAKSEFLAMMSH 65

Query: 579 ELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIM 638
           E+R+P+  I+G   LL+T+   +L+++QS Y++ I +S   LL L+NDILD + ++AG +
Sbjct: 66  EIRTPMNGILGMAQLLETT---TLDTEQSDYLDAIRSSGETLLVLLNDILDFSKIEAGYL 122

Query: 639 KLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSN 697
            L      L + +              ++ +       L ++V  DR RL Q+ S +L+N
Sbjct: 123 DLERQDFDLQEAIFSTLTLYRPMAEGKSLALDHTFAAGLPTYVRGDRTRLRQVLSNLLAN 182

Query: 698 AMDFSSKGST-VILKAARDNGDFI--FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-- 752
           A+ F+S+G   V +   R     +   +V++ G  IP +    +F  F        RR  
Sbjct: 183 AIKFTSEGRVHVDVSVRRLADLLMLDVAVEDTGIGIPHNRLDQLFRAFTQVDSSTTRRYG 242

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           G GLGL+I         G +S+SS     +     
Sbjct: 243 GTGLGLAISARLCAAMDGDISVSSRVGKGSIFRFS 277


>gi|75762098|ref|ZP_00742003.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74490416|gb|EAO53727.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 472

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 216 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 273

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 274 TPPEQRLRYLSIIKDESDYITNLVQDLFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNA 333

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 334 MYKERYIKVSFSCSPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISITDEHKRIS 392

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 393 ITIEDEGEGIPPEDLPHIFDRFYRVDKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEV 452

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 453 DYGSCFIVSLPS 464


>gi|269964118|ref|ZP_06178418.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831143|gb|EEZ85302.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1229

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 145/354 (40%), Gaps = 13/354 (3%)

Query: 439 TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWD 498
            I  ++  V + G D +I++SN +     + +   +      + +            G  
Sbjct: 557 IIQEINSIVFIHGEDNQIQMSNCSLYRNNRCKGCTIQSRKGAKPLVDNVRELRQVIAGKR 616

Query: 499 LFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEK 558
           +     T+  +  K     +     S+L  S         +    ++T+    E AL + 
Sbjct: 617 ISD---TTASNACKLGIQHVYRERKSILSPSS---KKKFVLTVLQDITEQKEREFALIDA 670

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASST 618
            E  + A   + +F+  +S+ELR+PL+   G  DLL      +      + +     S  
Sbjct: 671 QEKAQTAVRARENFLATMSHELRTPLSAAHGLLDLLTRQ---TNRESSKELITQAMRSLN 727

Query: 619 ILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG-KL 677
            L  LV+++LD + ++AG +K+  +   L   L++V +S   K     +  +V       
Sbjct: 728 HLNLLVDEVLDYSKLEAGQLKVTPTKTNLVTTLSDVVRSFEPKAVSKGLDYRVTFKPFVN 787

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
                D  RL+QI + +LSNA+ F++ G  + +  A + G  I  + + G  + E     
Sbjct: 788 PWLKVDAVRLVQIATNLLSNAVKFTTDGE-ISVSVAMNEGQLILKIADTGIGMTETQLDG 846

Query: 738 VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +   FV        +  G GLGLSIV+  +   GG + I S     TT+  ++P
Sbjct: 847 ILQPFVQADDTITRKYGGTGLGLSIVDRLVECMGGDLCIDSQFGLGTTMVVKLP 900


>gi|222528132|ref|YP_002572014.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621185|ref|YP_004022798.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454979|gb|ACM59241.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201652|gb|ADQ44979.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 571

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 152/408 (37%), Gaps = 67/408 (16%)

Query: 400 LHVIVTSNPRGGTIWMFENL--TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIK 457
           + + ++S    G +     +  T      T+     +     + ++S+GV        I 
Sbjct: 210 VKIEISSQDEIGKLASAFKIMATNLKRYITELEFEKQKLERILQNMSDGVLAINSRNEII 269

Query: 458 LSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             N + +   K + +       +  I A  S   ++   ++                   
Sbjct: 270 HINESAKRFLKDDIHGF-----LDKIQAQKSSVVSQPIIYE------------------- 305

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
              +    LE SI    ++      V +   +  +  L          D ++  FV  VS
Sbjct: 306 ---VDGYTLEVSIAFFVDSFQSTGMVFILHDITEQAKL----------DRMRKQFVADVS 352

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P+T I  +++ L         S + +++  I      +  L++D+L L+ +D+G 
Sbjct: 353 HELRTPITTIKTYSETLLD---VDDESVKREFLTVIIKECDRMTRLISDLLYLSRLDSGE 409

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
             L    + +++L+  V + +    ++ +  +       +    ADR RL Q+   +++N
Sbjct: 410 NILRIEEVNISELVRFVCEKMRIHANKKHQSLLCNVQEDII-IDADRDRLEQVLINLINN 468

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLG 757
           A+ +   G  + +   ++NG+   +V++NG  IP++    +F RF               
Sbjct: 469 AITYVQDGGRIEVCLKKENGNIELTVEDNGPGIPKEDLPRIFERFYRVDK---------- 518

Query: 758 LS-------------IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +             I +  +  HGG V + S +   T     +P KE
Sbjct: 519 -ARSRSLGGSGLGLSIADEIVKAHGGRVLVESEEGVGTKFTVVLPLKE 565


>gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 1382

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 3/244 (1%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            RA     ++ EAL + D  K  F  ++S+ELR+PLT I G  + +       L      
Sbjct: 332 CRAYEEERKRAEALAELDRAKTVFFSNISHELRTPLTLIQGPLEEVLHQTESPLAPSTRA 391

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            +     +   L  LVN  L+ + ++AG ++  Y    L     E+     + + ++ +R
Sbjct: 392 SLVMAQRNVLRLQKLVNTFLEFSRLEAGRIRAFYQPTDLGTFTQELASVFRSAIEQSGMR 451

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           + V           D Q   +I   +LSNA  F+ +G  + +          F +++ G 
Sbjct: 452 LVVHCPPLPQPVYVDHQMWEKIVLNLLSNAFKFTFEGE-IKVSLTWAGDRVKFEIQDTGI 510

Query: 729 SIPEDMCKSVFNRFV--SNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F+RF     A      G G+GLS+V+  ++LHGG + ++S     T    
Sbjct: 511 GIAEAEIPYLFDRFYRIQGAPSRTYEGSGIGLSLVQELVHLHGGTIEVNSIPAQGTCFRI 570

Query: 787 RIPS 790
            +P+
Sbjct: 571 YLPT 574



 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 120/803 (14%), Positives = 269/803 (33%), Gaps = 105/803 (13%)

Query: 48   RNSLAKKVNETYSFLSEICDQLSKYHSLLTENNCLTIVWDGKDETPEIIGQLHQRIDIPQ 107
            R +            +++ + + +   LL +   +  V DG      I       +    
Sbjct: 623  RLTTPNARIILADDNADMREYVKR---LLNKLYQVEAVGDGMAALEAIRRHPPDLVLTDV 679

Query: 108  TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIK---IEGRVSGS-- 162
                L  FE               ++LR    + +L     +  A +   +E   +G+  
Sbjct: 680  MMPQLNGFEL-------------LQQLRSNPLTQELPIILLSARAGEEYLVEALEAGADD 726

Query: 163  ---------CAFLRILSLDGIYSELAETTLKCKKLSNHISVFK----VLFDSLDFLVWHR 209
                        +RI +   +     + T K +KL       +     + + +       
Sbjct: 727  YLVKPFSARELLVRIEANLKMAQLRQQATQKEQKLRAQAETARQQTIDILERITEGFVAF 786

Query: 210  DQAGDILWANISYKKNTETEGIVFQKAIGESR-KLFKEEIKKRMISSSALEKNFCETVS- 267
            D      + N       +   I  ++ +G +  +LF + I            N   +++ 
Sbjct: 787  DSQWRFTYVNRQAALMVD---ISREQLLGNNIWELFPQAINHPFYQQLQQAINEQVSLTF 843

Query: 268  -TLEHGNNKSYKIVRVLNSFGEAGIAIDVSK-------EITVNDQLTHTYEILHNL--TV 317
             T     ++ + +     S G +    D+++             +L  + E L     + 
Sbjct: 844  ETFYARLSRWFLLDVYPASEGVSVYFRDITESKNQQLIREENEARLRKSEERLRIALKSA 903

Query: 318  AIAIFDQNRYLQF---HNRSF------------VELWEIDLAFLATNPSNDELLEFLRSA 362
             IA+F+Q+R L++   +N +F             +L+  + A   +      +L+     
Sbjct: 904  PIALFNQDRELKYTWIYNFTFNYQISEVIGKTDEDLFGAENAQALSEVK-TAVLDSGVGQ 962

Query: 363  NKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQ 422
             K  E      W++       + E  K+      GQ +          G      N+T  
Sbjct: 963  RK--EVKI--NWQDQEIYFDLTLEPLKNC----EGQII----------GLTGASVNITEL 1004

Query: 423  VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF-----RSLWKTEENRLSPG 477
              +E              D     + + G D      N  +     R+L +   N  + G
Sbjct: 1005 KYIEQALRESEARFRTMADSAPVLIWMSGTDRSCHFFNQVWLNFTGRTLEQEIGNGWTEG 1064

Query: 478  THIRNIAATCSRYYNESDGWDLFAA--IITSFD-------DERKSLQGTLELLSDSVLEY 528
             H  +  +    Y +  +    F     +   D       D  K L     + +  +   
Sbjct: 1065 VHPEDFDSCLQTYLSAFEQRIEFQMEYRLRRADGEYRWVFDRGKPLFTPEGIFAGYIGSC 1124

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
              I       ++      +  +   ALT+  E L+K ++  + F   VS++L++PL  I 
Sbjct: 1125 VDITEQKEANLMLQERAQELTQLNEALTQTAELLQKRNQELDQFAYVVSHDLKAPLRAIA 1184

Query: 589  GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
              +  ++      L  +    +E +      + NL++ +L+ + +  G  +     + + 
Sbjct: 1185 NLSQWIQEDLEDVLPQENQAQLELLRQRVYRMNNLIDSLLEYSRI--GRTEETIEDVNVK 1242

Query: 649  DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK-GST 707
            +LL+++  S++           +     + +    +  L Q+ + ++SN +    +    
Sbjct: 1243 NLLDDIIDSLSP-----PPSFTINVASSMPTVTTQKVLLSQVLTNLISNGIKHHGRLDGK 1297

Query: 708  VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINL 767
            + +        + F V ++G  IP    + +F  F +   R  +   G+GLSIV+  + +
Sbjct: 1298 LEISVQEQKNFYQFFVSDDGQGIPAQYQQKIFAIFQTVKTRETKESTGIGLSIVKKIVEI 1357

Query: 768  HGGHVSISSSDEGVTTINCRIPS 790
             GG++ ++S +   +T +   P 
Sbjct: 1358 QGGNIILASQEGQGSTFSFTWPK 1380


>gi|154502607|ref|ZP_02039667.1| hypothetical protein RUMGNA_00420 [Ruminococcus gnavus ATCC 29149]
 gi|153796799|gb|EDN79219.1| hypothetical protein RUMGNA_00420 [Ruminococcus gnavus ATCC 29149]
          Length = 361

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 113/230 (49%), Gaps = 3/230 (1%)

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
           E L   + +K  FV +VS+E+++PL+ I  + +LL+   L     ++ +Y E I  ++T 
Sbjct: 126 EELGSIETLKTDFVSNVSHEMKTPLSIIKNYAELLQRDALS--EEQRREYGEAIENTATR 183

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L +L+++IL L  ++   ++       +   L +      +   +  I ++V  + +   
Sbjct: 184 LSDLISNILKLNKLENQKIQPEAEVYDVCRQLCDCILQYESAWEKKEIEMEVEMEDR-AE 242

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
             AD+  +  +++ +LSNA+ F+  G  + ++   D      SV + G  + ++  K +F
Sbjct: 243 IYADQDLMELVWNNLLSNAVKFTELGGVITVRQLSDEQGVTISVSDTGCGMSKNTMKHIF 302

Query: 740 NRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++F        + G GLG+++V+  + L  G + + S ++  +T    +P
Sbjct: 303 DKFYQGDTSHSKEGNGLGMAMVKRVLELMDGEIQVLSEEKQGSTFIVTLP 352


>gi|115526880|ref|YP_783791.1| histidine kinase [Rhodopseudomonas palustris BisA53]
 gi|115520827|gb|ABJ08811.1| histidine kinase [Rhodopseudomonas palustris BisA53]
          Length = 450

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 145/361 (40%), Gaps = 27/361 (7%)

Query: 437 GETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDG 496
              ++ + +   +    GR+   N A   L                +           + 
Sbjct: 103 RAVVEGMPDPAVLLDRAGRVLHLNAAAAQLVPAL-----------RLNELAQFALRSPEF 151

Query: 497 WDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALT 556
                  I +    R +    + +  D  LE  I P+P    + T  +  D         
Sbjct: 152 VTALREAIATAQPRRANYVDRVPV--DRWLELIITPVP----VPTAFDGVDHCML--MTF 203

Query: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISAS 616
                LR+ +E++  FV + S+ELR+PL  + GF D L+        +++  ++  + A 
Sbjct: 204 HDLTPLRRVEEMRVDFVANASHELRTPLAALSGFIDTLQGPARDDAKARER-FLGIMHAQ 262

Query: 617 STILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK 676
           +  +  L++D+L L+ V+        + + +  L+ +V + +     E  + ++     +
Sbjct: 263 ARRMARLIDDLLSLSRVELSAHVRPDAEVDIAPLVRQVIEGLEPLAQERQVVVETELPLE 322

Query: 677 LGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFIFSVKNNGSSIP 731
           + +   DR+ LL++F  ++ NA+ + + G  V++   + +      ++ F+V++ G  I 
Sbjct: 323 VATIAGDREELLRLFENLIENALKYGASGGRVVVSLGQADAADGTAEYRFAVRDFGPGIA 382

Query: 732 EDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            +    +  RF          + G GLGLS+V+  +N H G + I S+     T    +P
Sbjct: 383 PEHLPRLTERFYRVDVGDSRAQGGTGLGLSLVKHIVNRHRGRLLIDSALGKGATFTACLP 442

Query: 790 S 790
           S
Sbjct: 443 S 443



 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 52/178 (29%), Gaps = 11/178 (6%)

Query: 119 LKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSEL 178
           L      +L  A   L   G             A    GR   +   +   +L       
Sbjct: 28  LTRQWADRLRHAAIILIAAG----FALTALWLFAGLAPGRAVAAFLCIVAAALVPWRLND 83

Query: 179 AETTLKCKKLSNHISV--FKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKA 236
              + +   + N + +   + + + +       D+AG +L  N +  +      +     
Sbjct: 84  GLPSREENLIVNPVQMPVVRAVVEGMPDPAVLLDRAGRVLHLNAAAAQLVPALRLNELAQ 143

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAID 294
                  F   +++ + ++     N+ + V       ++  +++        A   +D
Sbjct: 144 FALRSPEFVTALREAIATAQPRRANYVDRVPV-----DRWLELIITPVPVPTAFDGVD 196


>gi|325522177|gb|EGD00827.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. TJI49]
          Length = 1219

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 154/377 (40%), Gaps = 13/377 (3%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                   + +         ++ +   V V     R++  +P  ++L+   ++ +      
Sbjct: 705  ELKSRNQQLDRANDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQTLFALPDDSVGQPM-- 762

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                A  ++ ++ +D   +  + +    D E +           +V  Y          +
Sbjct: 763  ----AQQNKLFSAADLERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADDRIDGAV 818

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
            L F ++    RA            +A+  K++F+  VS+ELR+PL  I G+  +L T+  
Sbjct: 819  LAFQDIDALKRALGTAQAARTEAERANTAKDNFLGLVSHELRAPLNVISGWAAVLATASE 878

Query: 600  GSLNSKQS---QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              + + +    + V  I     +   L++D+LD++ + +G   L+        ++  V +
Sbjct: 879  RGMPADEQMSQRAVTTIMRHCQLQAELIDDLLDVSRISSGRFSLDTKPADFAAIVQTVVE 938

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            S         I +             D +RL Q+ S ++ NA+ F+ +G  V +   R  
Sbjct: 939  SNRPVAARKEISLATAGLNARAVVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRLG 998

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 SV +NG  +  +    +F+RF+ +     R   G+GLGLSIV+  +  HGG V+ 
Sbjct: 999  TMLELSVTDNGIGVSAEQLPYLFDRFMQSDTSRTRNYGGLGLGLSIVKHLVTAHGGTVTA 1058

Query: 775  SSSDEG-VTTINCRIPS 790
            SS  EG  T +  R+PS
Sbjct: 1059 SSEGEGRGTRLTVRLPS 1075


>gi|302669371|ref|YP_003832521.1| two component system histidine kinase/response regulator hybrid
            protein [Butyrivibrio proteoclasticus B316]
 gi|302397035|gb|ADL35939.1| two component system histidine kinase/response regulator hybrid
            protein [Butyrivibrio proteoclasticus B316]
          Length = 1409

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 120/282 (42%), Gaps = 11/282 (3%)

Query: 518  LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
             E +S  +  + ++ L  A  +  F+  T   +  + +    +   +A+  K+ F+ ++S
Sbjct: 762  FERISVKIGSFVLVGLFIAWIVWAFLRSTIIRKQYKEIAIAKDEAERANTAKSRFLANMS 821

Query: 578  YELRSPLTNIIGFTDLLKTSKLGSLNSKQS----QYVEYISASSTILLNLVNDILDLATV 633
            +E+R+P+  I+G  +LL      ++          Y   I  ++  LL L+ND+LD++ +
Sbjct: 822  HEIRTPINTIMGMDELLLREAHDNVPDSYYTAVINYGVDIKNAAESLLGLINDVLDISKI 881

Query: 634  DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFS 692
            ++G M L        + L  +   I  K  E ++      D  +      D  ++ QI  
Sbjct: 882  ESGKMHLVEQEYDTVECLRGIITMIRVKSSEKDLSFDTNIDESIPKRLYGDIGKIKQIVL 941

Query: 693  KILSNAMDFSSKGS-TVILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR 748
             +L+NA+ ++ KG  T+ +     N D     FSVK+ G  +  +  + +F+ +      
Sbjct: 942  NLLTNAVKYTEKGGFTLTVTVTSKNADKCSLRFSVKDTGIGVKAENMEKLFSAYERLDEE 1001

Query: 749  GQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  G GLGL I   F  L  G +   S+    +     +
Sbjct: 1002 KNSGIQGTGLGLDISRRFAELMNGRLWCESTYGEGSDFILTL 1043


>gi|239827300|ref|YP_002949924.1| histidine kinase [Geobacillus sp. WCH70]
 gi|239807593|gb|ACS24658.1| histidine kinase [Geobacillus sp. WCH70]
          Length = 468

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 116/248 (46%), Gaps = 5/248 (2%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  R  +A     +A+ + D  K  F+ +VS+ELR+PL+ + G+++ +    L     
Sbjct: 219 NDEVGRLAKAFNVMAKAIAEEDMRKREFLANVSHELRTPLSYVKGYSEAILQG-LVKTEE 277

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           ++ +YV+ I   +  +  LV D+LDLA ++   + L  + +V   ++ +        + +
Sbjct: 278 EERKYVQLIHREADRMERLVRDLLDLARLEGNNVPLQKTPLVFAQVIEDTVAKYEPFLQK 337

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSV 723
             I + +  D  +     D  RL Q+   +L NA+ ++     + ++  +  +      +
Sbjct: 338 KQITLNMELDHDII-LEGDADRLEQVVQNLLDNAVRYTPAEGKIHIRLKKVSDASCQLII 396

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGV 781
           +++G  +P++    +  RF        R   G GLGL+IV+  I+LH G +S  S +   
Sbjct: 397 RDSGKGVPKEKLPLLGQRFYRVDQARTRKEGGTGLGLAIVKQIISLHNGTISFFSEEGKG 456

Query: 782 TTINCRIP 789
             +  ++P
Sbjct: 457 MEVVIQLP 464


>gi|160940185|ref|ZP_02087530.1| hypothetical protein CLOBOL_05074 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436765|gb|EDP14532.1| hypothetical protein CLOBOL_05074 [Clostridium bolteae ATCC
           BAA-613]
          Length = 852

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 107/246 (43%), Gaps = 12/246 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  +   ++ + K+ F+ ++S+++R+P+  I+G T +   +       +    +  
Sbjct: 329 HELEKARQTALESSKAKSEFLANMSHDIRTPMNAIVGMTAI--ATAHMDDREQVQSCLRK 386

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS  LL L+ND+LD++ +++G + L    I L ++   +   +  ++        + 
Sbjct: 387 ITLSSKHLLGLINDVLDMSKIESGKLTLTTEQISLQEVTEGIVNIMQPQVKAKKQTFDIH 446

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG-------DFIFSVK 724
            D  L      D  RL Q+   +LSNA  ++ +G  + L  + +             +VK
Sbjct: 447 VDNILTENVWCDGVRLNQVLLNLLSNATKYTPEGGAIRLSLSEEKSPKGENYVRIHINVK 506

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  + +D  K ++  +         +  G GLG++I +  ++   G + + S     T
Sbjct: 507 DNGIGMSQDFLKKIYESYSRADSARVHKTEGAGLGMAITKYIVDAMEGGIEVQSEIGKGT 566

Query: 783 TINCRI 788
                 
Sbjct: 567 EFRITF 572


>gi|297588279|ref|ZP_06946922.1| phosphate regulon sensor histidine kinase protein PhoR [Finegoldia
           magna ATCC 53516]
 gi|297573652|gb|EFH92373.1| phosphate regulon sensor histidine kinase protein PhoR [Finegoldia
           magna ATCC 53516]
          Length = 468

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 116/256 (45%), Gaps = 4/256 (1%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + +      +  +  R    L    + + K +++KN F+  VS+ELR+PLT+I G+   L
Sbjct: 208 DMEVRAKENDTDEIGRLGMTLNLLTDNINKKEQLKNEFISSVSHELRTPLTSIKGWAQTL 267

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           K        +     ++ I +    L N+V ++LD +   +G + +      L +L   +
Sbjct: 268 KYDPSDLETTTMG--IDIIDSECDRLTNMVEELLDFSRFTSGRISIVKRKQNLIELAERI 325

Query: 655 KQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
           K  +  K+    I + +  +        D  R+ Q+F  IL NA+ F+S+  T+I+   +
Sbjct: 326 KNQLLPKVRSKGIDLILNYESPELIATFDEDRIKQVFINILDNAIKFTSEKGTIIINIEK 385

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSI 774
                  S+ + G  I  +  + V  +F   ++      VGLGLSI E  + LH G + I
Sbjct: 386 TEKFAEISIIDTGIGISFEEIELVTGKFYKGSNSNSH--VGLGLSICEEIVKLHKGELMI 443

Query: 775 SSSDEGVTTINCRIPS 790
            S  +  TT++  +P 
Sbjct: 444 KSKLDEGTTVSFTLPL 459


>gi|163849056|ref|YP_001637100.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222527024|ref|YP_002571495.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163670345|gb|ABY36711.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450903|gb|ACM55169.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 502

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 134/347 (38%), Gaps = 22/347 (6%)

Query: 450 FGPDGRIKLS-NPAFRSLWKTEEN---RLSPGTHIRNIAATCSRYYNESDGWDLFAAIIT 505
               GRI  + NPA   +   +E     L  G+ IR I  T  +         L    +T
Sbjct: 166 LDEQGRILFNPNPAALPMPAHQEALAAALRNGSDIRTIETTTGQRVR------LLTYRLT 219

Query: 506 SFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML-TFVNVTDSVRAERALTEKNEALRK 564
             D       G L    + VL   +  L          +       A R+L    EA  +
Sbjct: 220 RPDGPAALQLGRLLTDQEQVLRQLVSGLIGLGLFGAVIIGFAGWWLAGRSLRPAEEAWVR 279

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
                  F+   S+ELR+PLT I    ++       + +  Q + +  + + S  +  LV
Sbjct: 280 Q----TRFIASASHELRAPLTLIRASAEVALRH---ADDPDQRELLSDVLSESDHMRRLV 332

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
           +D+L L+ +D+G + L    + L   L ++ + +     E  I I++      G+ +AD 
Sbjct: 333 DDLLTLSRLDSGALVLQRQPVSLPSFLADLHRQVRRLGEEKGIAIQL--APITGTVLADP 390

Query: 685 QRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
            RL Q+   ++ NA+ ++  G  + +           SV +NG  I  +    +F RF  
Sbjct: 391 DRLRQVLLILIDNALRYTPSGGVITIATEPAGKQIRLSVSDNGCGIAPEHLPHLFERFYR 450

Query: 745 NAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                 R     GLGL+I +  +  H G + I S     T +   +P
Sbjct: 451 VDVARNRSDGHAGLGLAIAKGLVEAHSGAIGIESEVNRGTRVWFTLP 497


>gi|172065526|ref|YP_001816238.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997768|gb|ACB68685.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 730

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 171/392 (43%), Gaps = 22/392 (5%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGE-TIDHLSEGVAVF-GPDGRIKLSNPAFRSLWKT 469
           T+ + +  +  +  E +     + Q    + H    +A+  GP+ RI L+N  F +L   
Sbjct: 187 TLALSQQRSRALSDEIRRREDAEQQRNGVLMHAPLPIALLSGPEHRIVLANHRFSALCGR 246

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYS 529
            +    P T +     T +         +   +       +R    G   +     L ++
Sbjct: 247 TDIVDRPLTSVLPGGDTPAIVQALETAREQGCSTTIGEHHDRPEPDGAARVYR---LHFN 303

Query: 530 IIPLPNA-QTMLTFVNVTDSVRAERALTEKNEA-------LRKADEIKNSFVQHVSYELR 581
             PL      +++ V VT+ V A   L   N         LR A++ K+ F+  + +ELR
Sbjct: 304 PQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELR 363

Query: 582 SPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLN 641
           +PLT I    +L++     +  ++    +  I      ++ L++D+LD++ +  G + L 
Sbjct: 364 NPLTPISLALELIRNRDGQATPNE----IAIIQRQLDHMVRLIDDLLDVSRITRGKITLK 419

Query: 642 YSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
             ++ L D+++   +  +  + +   R+ V +D        D  RL Q+ + +L+NA  +
Sbjct: 420 KESLRLADIVDRAVEVASPLLEQRRHRLHVDADPD-ARCHGDPVRLSQVVANLLTNAAKY 478

Query: 702 SSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGL 758
           +  G  + ++A    +G  I  V +NG+ IP D   S+F  F       +    G+G+GL
Sbjct: 479 TMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGL 538

Query: 759 SIVESFINLHGGHVSISSSDEG-VTTINCRIP 789
           ++V S +NLHGG V   S+  G  +T    +P
Sbjct: 539 ALVRSLVNLHGGTVRADSAGPGCGSTFTIALP 570


>gi|331086757|ref|ZP_08335834.1| hypothetical protein HMPREF0987_02137 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409923|gb|EGG89358.1| hypothetical protein HMPREF0987_02137 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 471

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 117/236 (49%), Gaps = 4/236 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L      L+  ++ +  F+ +VS++ RSPLT+I G+ + +    +      Q +Y+  I 
Sbjct: 232 LNYMAAQLKDMEDYQKKFIANVSHDFRSPLTSIKGYVEAIVDGTIPQ--ELQGKYLNIIL 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L +L  D+L L   D   + L+ +   L+D +     S         I I+++ D
Sbjct: 290 FETERLTDLTKDLLTLNEFDTKDLLLDKTNFNLHDTIKHTAASFEGTCTSKKISIELLFD 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            ++ +  ADR ++ Q+   +L NA+ FS+  S+++L+    NG    SVK++G  IP+  
Sbjct: 350 PRIQNVFADRGKIQQVLYNLLDNAIKFSNPDSSIVLETTERNGKVFVSVKDSGIGIPKKS 409

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              V+ RF  +       ++G GLGL+IV+  I  HG ++++ S++   T     +
Sbjct: 410 LTKVWERFYKSDLSRGKDKKGTGLGLAIVKEIIQAHGENINVISTEGVGTEFIFSL 465


>gi|325663167|ref|ZP_08151617.1| hypothetical protein HMPREF0490_02358 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470621|gb|EGC73851.1| hypothetical protein HMPREF0490_02358 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 471

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 117/236 (49%), Gaps = 4/236 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L      L+  ++ +  F+ +VS++ RSPLT+I G+ + +    +      Q +Y+  I 
Sbjct: 232 LNYMAAQLKDMEDYQKKFIANVSHDFRSPLTSIKGYVEAIVDGTIPQ--ELQGKYLNIIL 289

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  L +L  D+L L   D   + L+ +   L+D +     S         I I+++ D
Sbjct: 290 FETERLTDLTKDLLTLNEFDTKDLLLDKTNFNLHDTIKHTAASFEGTCTSKKISIELLFD 349

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
            ++ +  ADR ++ Q+   +L NA+ FS+  S+++L+    NG    SVK++G  IP+  
Sbjct: 350 PRIQNVFADRGKIQQVLYNLLDNAIKFSNPDSSIVLETTERNGKVFVSVKDSGIGIPKKS 409

Query: 735 CKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              V+ RF  +       ++G GLGL+IV+  I  HG ++++ S++   T     +
Sbjct: 410 LTKVWERFYKSDLSRGKDKKGTGLGLAIVKEIIQAHGENINVISTEGVGTEFIFSL 465


>gi|260778315|ref|ZP_05887208.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606328|gb|EEX32613.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 591

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 147/347 (42%), Gaps = 20/347 (5%)

Query: 449 VFGPDGRIKLSN--PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITS 506
           VF    ++ L+N       + + +        ++ +  A   R   E      F     S
Sbjct: 14  VFDSIDQLSLTNVENIDTVINRIDGTYSRLNIYLADFVAEVQRQQIE------FLDFKES 67

Query: 507 FDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKAD 566
           F +++    G + L S       +I + +   +       D     + + E      ++ 
Sbjct: 68  FYNKQYVYLGIILLCS-----MLMIGVISWMYLHQIRLSKDLEERTKVMEEAKRNAEQSS 122

Query: 567 EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVND 626
             K  F+ ++S+E+R+PL  IIG +         S + +   ++  I++S   LL L+N+
Sbjct: 123 IAKARFLANMSHEMRTPLNAIIGLSQ---KEYYQSSDEQTRHFLSMINSSGEHLLKLINN 179

Query: 627 ILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQ 685
           +LDL+ ++ G  KL+     +++L++  K        +  + +       +     +D+ 
Sbjct: 180 VLDLSKIEQGKSKLDSDEFFISELIDVSKTVFINFDKQQAVDVFFSVSLDRNYKIKSDKT 239

Query: 686 RLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           +L+QI + +  NA+ F+  G   + +  + ++G     VK+ G  + ++    VF  F  
Sbjct: 240 KLVQIINNLGYNALKFTESGHVEIHISLSSESGMLHIVVKDTGIGMTQEQLDKVFQEFTQ 299

Query: 745 NAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +  G GLGLSI +S +NL GG +S+ SS    +  +  +P
Sbjct: 300 ADDSITRKYGGTGLGLSICQSLVNLLGGAISVESSLGEGSEFSIEVP 346


>gi|229010081|ref|ZP_04167295.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048]
 gi|228751214|gb|EEM01026.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048]
          Length = 421

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +     +++      L      ++ F+  V++ELR+PLT + G+ D+   SK  
Sbjct: 172 TTTRNDEIGELAQSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADI--ASKEN 229

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + I  
Sbjct: 230 TPPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEKHNFFIQVQEVHLHTFLTRITEKINV 289

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+ + IL+NA   S + S + +    ++    
Sbjct: 290 MYGEKQIKVVFTCPSSLL-VKLDEQRFEQVMANILNNAYRHSKEHSHINISVTEEHKRIS 348

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 349 ITIEDEGEGIPPEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEI 408

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 409 DHGSCFTISLPS 420


>gi|303240382|ref|ZP_07326900.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592109|gb|EFL61839.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 488

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 121/238 (50%), Gaps = 2/238 (0%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L+E  E + K ++++  FV +VS+E R+PLT I G  + L    +        ++ + +
Sbjct: 248 ELSEATEEINKLEQVRRDFVANVSHEFRTPLTVIRGSLEALSDGTIED-TEDIKRFYQRM 306

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
            + +  L  LV+D+L+L+ + +G + ++   + +  LL+++ +S+ T   +  I+I  I+
Sbjct: 307 LSETRGLERLVSDLLELSRLQSGKITIHKEHVHIPSLLSDIIKSMQTIADKKEIQIDFIT 366

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           D  +   + D  RL Q+F   + NA+ +S   + V +     +      +++ G  I  +
Sbjct: 367 DDNVPPVLGDYDRLRQLFVIFIDNAIKYSPDKTIVTVTTHVKDS-LEILIQDQGYGIAVE 425

Query: 734 MCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
               V++RF       +  G GLGL+I +  I L+GG V + S+    TTI  ++P +
Sbjct: 426 ELPYVWDRFYKTDKSRKSSGTGLGLAIAKHLIKLNGGSVELKSAAGKGTTIEIQLPVQ 483


>gi|307729618|ref|YP_003906842.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307584153|gb|ADN57551.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 657

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 164/476 (34%), Gaps = 40/476 (8%)

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSAN-KLP---------EQLNWKTWKENIFSVYKSSE 386
           +L  +D          D     LR+   ++P         E    +  +  +  V   S 
Sbjct: 56  DLLVLDYQLSGPETGLD-FFRRLRAEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSG 114

Query: 387 THKDTWHLPNGQTL-HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE 445
            + D       + L  V +        +          D E  Y  L        + L  
Sbjct: 115 DYLDYLPEAVERVLSQVRLQRASDEALLL--------RDREQHYRNLS-------EALPH 159

Query: 446 GVAVFGPDGRIKLSNPAFRSLWKTEENRLS--------PGTHIRNIAATCSRYYNESDGW 497
            V      G     +  +       EN                  +  +  +      G 
Sbjct: 160 LVLTCNAAGDCDFLSKQWYDYTGLAENSSHGLAWLDAVHPDDRDEVRRSWLKAVAGHAGT 219

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
                 I   D E +     +    D+    S               + +  R   +   
Sbjct: 220 YRHELRIRRHDGEYRWFDARMVATRDNEGNVSKWFGSCTDIHSEREAMQERERLLASEQA 279

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
             +   +A+  K+ F+  +S+ELR+PLT ++    +L    +  L  +    V  I  + 
Sbjct: 280 ARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVL--DMIPDLPDQARASVRMIRRNV 337

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
            +   L++D+LDL  V  G ++L+  T+ ++++++ V +   +++      + V  +   
Sbjct: 338 ELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQVKQQDVHVYKEATH 397

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
              +ADR RL Q+   ++ NA  F+  G  + ++   +      SV++ G  I  D    
Sbjct: 398 HYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTRDERMHVQISVEDTGIGIEPDQIGK 457

Query: 738 VFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEG-VTTINCRIPS 790
           +FN F         Q  G+GLGL+I ++  ++HGG V+  S       T    +P+
Sbjct: 458 LFNAFEQGDQKMTRQFGGLGLGLAITKALTDVHGGTVTAQSPGAHCGATFTITLPT 513


>gi|88812355|ref|ZP_01127605.1| sensor histidine kinase/response regulator GacS [Nitrococcus
           mobilis Nb-231]
 gi|88790362|gb|EAR21479.1| sensor histidine kinase/response regulator GacS [Nitrococcus
           mobilis Nb-231]
          Length = 686

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 128/283 (45%), Gaps = 20/283 (7%)

Query: 523 DSVLEYSIIPLPNAQTML---TFVNVTDSVRAERALTEKNEALR-------KADEIKNSF 572
           ++ +E  +  L   Q           ++  +  RAL  +N  L        +A +IK+ F
Sbjct: 230 ETAVETMVTALRQRQHRFEERIHCTTSELRQTLRALEVQNAELDVARRRALEASKIKSQF 289

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           +  VS+E+R+P+  I+GF +LL+ S    L+++Q  +V+ I  S   LL ++NDILD + 
Sbjct: 290 LAKVSHEIRTPINGIVGFAELLQHS---PLDAEQRDHVDTIKVSCANLLAIINDILDFSK 346

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIF 691
           ++AG ++++     + D + EV   +A   +   + + ++I          D  R+ QI 
Sbjct: 347 IEAGKLEIDNMVFDVRDSVEEVITLLAPTAYSKGLELVQLIYADVPPKLNGDPVRIRQIL 406

Query: 692 SKILSNAMDFSSKGSTVILKAARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           + +L NA+ F+ +G  V+     +    +     ++ + G  + E+    +F  F     
Sbjct: 407 TNLLHNAIKFTEQGRIVVRVILEEESAVDATLRITINDTGIGLGENDHSKLFRAFGQAGG 466

Query: 748 R--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                  G GLGL I +  +   GG +   S  +  +T    +
Sbjct: 467 SPGSHCSGTGLGLIISKQLVEQMGGSIGFESEPQKGSTFWFAL 509


>gi|254445580|ref|ZP_05059056.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198259888|gb|EDY84196.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1300

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 134/280 (47%), Gaps = 23/280 (8%)

Query: 529  SIIPLPNAQTMLTFVNVTDSVRAE-RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            S I + NA+ +    N+   V    R L    E   ++D +K++F+ ++S+E+R+P+  I
Sbjct: 869  SQIQVQNAELLGHRQNLEKMVATRTRELEVSKEKAERSDRLKSAFLANMSHEIRTPMNAI 928

Query: 588  IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
            +G  +++    L     ++  Y E I  SS  L+ L++DILDL+ +++G   L      +
Sbjct: 929  VGLLEIVHKEDLP--EDERETYAEVIRQSSRTLMTLIDDILDLSRIESGEATLQLQPCRV 986

Query: 648  NDLLNEVKQSIATKMHEN---NIRIKVISDGKLGSFV----------ADRQRLLQIFSKI 694
            +++  E+         +    ++ +K++ DG  GS +           D  RL QI + +
Sbjct: 987  DEVCEELYSLFRYVTKKESDGDVVLKLVRDGVEGSLLNEARDEFCLEFDPVRLKQILTNL 1046

Query: 695  LSNAMDFSSKGSTVILKAARDN----GDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHR 748
            LSNA+ F+ KG  ++     +N        F V ++G  IP+D  + +F+RF  V +   
Sbjct: 1047 LSNAIKFTEKGE-ILFGYDSENLGSEVRIRFFVSDSGVGIPQDHLEKIFDRFHKVEDPDG 1105

Query: 749  GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
               RG GLGL+I +    +  G + ++S     T  +   
Sbjct: 1106 RVHRGTGLGLTISKRLSEMMSGVIEVNSEVGKGTCFSATF 1145


>gi|166030503|ref|ZP_02233332.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC
           27755]
 gi|166029665|gb|EDR48422.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC
           27755]
          Length = 957

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 123/256 (48%), Gaps = 11/256 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +    ++ L       + A++ K SF+ ++S+++R+P+  I+G   +L+ S  G+   
Sbjct: 554 NQELEEKQQELQNALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKS--GNDGE 611

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +    +  I  SS +LL+L+ND+LD+A +++  +     +I L+ +  E+ +S++ +  E
Sbjct: 612 RAKDCLNKIHESSKLLLSLINDVLDMAKLESDTVVFGDESINLDQVCQEITESLSFQAEE 671

Query: 665 NNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGD 718
             + +    D        ++   L ++   + +N+M ++    ++      ++ + D+  
Sbjct: 672 KGLHVIGEHDDYSGIYVWSNAVHLKKVLMNLFTNSMKYNKVNGSIYMSMRTIERSEDHMT 731

Query: 719 FIFSVKNNGSSIPEDMCKS-VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
             F +++NG  + E+  K+ +F  FV   +       G GLG+ IV+  +   GG +++ 
Sbjct: 732 CEFKIRDNGIGMSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVE 791

Query: 776 SSDEGVTTINCRIPSK 791
           S     +     +P K
Sbjct: 792 SKLGEGSCFTVILPFK 807


>gi|170732652|ref|YP_001764599.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia cenocepacia MC0-3]
 gi|169815894|gb|ACA90477.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia cenocepacia MC0-3]
          Length = 1220

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 152/371 (40%), Gaps = 13/371 (3%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
             + +         ++ +   V V     R++  +P  ++L+   ++ +          A 
Sbjct: 712  QQLDRANDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQTLFGLSDDSVGQPM------AQ 765

Query: 487  CSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
             +  ++ +D   +  + +    D E +           +V  Y          +L F ++
Sbjct: 766  QNSLFSAADLERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADDRIDGAVLAFQDI 825

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL---KTSKLGSL 602
                RA        +   +A+  K++F+  VS+ELRSPL  I G+  +L   +   + + 
Sbjct: 826  DALKRALGTAQSARDEAERANTAKDNFLALVSHELRSPLNVISGWAAVLMTARERGVSTD 885

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                 + V  I     +   L++D+LD++ + +G   L+   +     +  V +S     
Sbjct: 886  EEMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDTKPVDFAAAVRTVVESNRPAA 945

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             +  I +             D +RL Q+ S +L NA+ F+  G  V +   +       S
Sbjct: 946  EKKQITLVSAGLQGRAIVSGDARRLQQVASNLLGNALKFTPDGGRVEVALTQLGTLVELS 1005

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V +NG  +  ++   +F+RF+ +         G+GLGLSIV+  ++ HGG V+ SS  EG
Sbjct: 1006 VTDNGIGVKAELLPRLFDRFMQSDITRTRNYGGLGLGLSIVKHLVSAHGGTVTASSEGEG 1065

Query: 781  -VTTINCRIPS 790
              T +  R+P 
Sbjct: 1066 RGTRLTVRLPL 1076


>gi|117620577|ref|YP_856843.1| PAS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561984|gb|ABK38932.1| PAS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1307

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 102/520 (19%), Positives = 187/520 (35%), Gaps = 60/520 (11%)

Query: 291 IAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVEL-------W 339
           +A +VS+   +   L         +   L V + + D    +   N+    L        
Sbjct: 503 LAREVSQRQEMEQTLALESQFRESLFQALPVPVFLRDNQGEIIKRNKQAKRLEARYLAEL 562

Query: 340 EIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT 399
            +  A L        L + + S  ++P QL                              
Sbjct: 563 HLPEAQLQGGEGEMALGDQVYSYAQIPLQL------------------------------ 592

Query: 400 LHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
                  +P G  I +  N++   +         +      + +  GV +     R  ++
Sbjct: 593 ----GKQSPAGDLIAL-SNISALRERTRLLRQAERRLRALTNTVP-GVVIQFLLQREGIA 646

Query: 460 NPAFRSLWKTEENRLSPGTHIRNIAATCSRY--YNESDGWDLFAAIITSFDDERKSLQGT 517
              F S    E   L+     RN      R   ++          ++ +      +L+  
Sbjct: 647 QVEFISRGSYELLGLASQQIRRNPGQALGRLDQHDRRKMKAPMLEMLQAGQPFSYALRYE 706

Query: 518 LELLSDSVLEY----SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
                   L++            +      +VT  V  E+AL   +E   +A   K  F+
Sbjct: 707 HPGKGTRWLQFYGRGRSQSEQGWRVYGVVQDVTTRVEQEQALQASHERAEQAVLAKGRFL 766

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
             VS+E+R+P+  I+G  + L  +   SLN++Q   + ++  +   LL L+ND+LD +  
Sbjct: 767 AAVSHEIRTPMNAILGLLEWLSHT---SLNAEQRSALAHVRQAGDELLGLLNDVLDFSRN 823

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFS 692
           +   + L+     L DL   V     +K     +++++  D +L +    D  R+ Q+  
Sbjct: 824 ENRQLALSLQPTDLVDLCEHVAAVHWSKARSKRLQLRLDLDHRLPAQVELDPHRVQQVLH 883

Query: 693 KILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            +L+NA+ FSS+G  V L A R     +  V + G  I  ++   +F  F      GQ R
Sbjct: 884 NLLANAIKFSSRGEVV-LWARRAGSQLLCGVDDEGPGISAELLPRLFLPFEQGGEAGQPR 942

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGL+I    +   GG + +     G +   C +P 
Sbjct: 943 AQGTGLGLAICRQLMEQMGGEIRVEPRPTGGSRFLCALPL 982



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 98/304 (32%), Gaps = 54/304 (17%)

Query: 159 VSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWA 218
           +S    +L   S   +  E+++     + L+      + LF +L   V+ RD  G+I+  
Sbjct: 488 ISAGVIWLIWRSRQQLAREVSQRQEMEQTLALESQFRESLFQALPVPVFLRDNQGEIIKR 547

Query: 219 NISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK 278
           N   K+              E+R L +  + +  +     E    + V          Y 
Sbjct: 548 NKQAKRL-------------EARYLAELHLPEAQLQGGEGEMALGDQV----------YS 584

Query: 279 IVRVLNSFGEAGIAID------VSKEITVNDQLTHTYEILHNLTV---AIAI---FDQNR 326
             ++    G+   A D      +S        L      L  LT     + I     +  
Sbjct: 585 YAQIPLQLGKQSPAGDLIALSNISALRERTRLLRQAERRLRALTNTVPGVVIQFLLQREG 644

Query: 327 --YLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKS 384
              ++F +R   EL  +    +  NP   + L  L       +Q + +  K  +  + ++
Sbjct: 645 IAQVEFISRGSYELLGLASQQIRRNP--GQALGRL-------DQHDRRKMKAPMLEMLQA 695

Query: 385 SETHKDTW---HLPNG-QTLHVIVTSNPRGGTIW----MFENLTVQVDLETKYNTLVKVQ 436
            +         H   G + L        +    W    + +++T +V+ E       +  
Sbjct: 696 GQPFSYALRYEHPGKGTRWLQFYGRGRSQSEQGWRVYGVVQDVTTRVEQEQALQASHERA 755

Query: 437 GETI 440
            + +
Sbjct: 756 EQAV 759


>gi|239787643|emb|CAX84111.1| Sensor protein [uncultured bacterium]
          Length = 1221

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 92/557 (16%), Positives = 196/557 (35%), Gaps = 53/557 (9%)

Query: 278 KIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVE 337
            I R+L+ +  A   I ++        L        ++   + + D+   ++  N++  +
Sbjct: 147 HIFRLLSFWLVATTIIRMTLTEPFK-ALARGASSFDSVPEPMIVVDRGGTIRQVNKAGCQ 205

Query: 338 LWEIDLAFLATNPSND------------ELLEFLRSANKLPEQ----LNWKTWKENIFSV 381
           L  +  + L    S+D             L   +R A  LP         K W     S 
Sbjct: 206 LVNLPESDLRGQSSHDLFHPVGTAPADCSLCHHIRDAEPLPPTDIAFPESKRWWRITLSP 265

Query: 382 YKSSETHKDTWH---------LPNGQTLHVIVTS-------NPRGGTIWMFENLTVQ-VD 424
             +    +             +  G+    +          +     I+ FE +  Q + 
Sbjct: 266 LDAPGAPQGMVQTSVDVTEKKMAVGRLNRHLFDQGIIATMMHLSLSDIFTFEEILQQALQ 325

Query: 425 LE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           L  + +   +  +G       E + +    G       A  ++                +
Sbjct: 326 LTLSSHRFSLLSRGSIFLRKGETLELVAQQGLHSHLLTACATVPFGWCLCGRAAATGALV 385

Query: 484 AATCSRYYNESDGWDLF-AAIITSFDDERKSLQGTLELL---SDSVLEYSIIPLPNAQTM 539
            + C  + ++    ++           + K++ G L L         E  +  +      
Sbjct: 386 YSECVDHRHDITFPEMTPHGHYCMPIGDPKNVLGVLNLYVPEGHGGTEDELTFVKTIADT 445

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
           L  +     ++AER          ++   K+ F+ ++S+E+R+P+  ++G        + 
Sbjct: 446 LAGIIRRVQLQAERTAEAV-HFAEESSRTKSQFLANMSHEIRTPINAVMGMH---YLLQQ 501

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             L  +Q  Y++     +  LL L+NDILD + ++AG +++      L+D+L  +    +
Sbjct: 502 TLLTDQQQDYLDKADNGAHSLLGLINDILDFSKIEAGKLEIEAIDFQLSDMLENLADITS 561

Query: 660 TKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA----- 713
               + NI + +     +    V D  RL QI   ++SNA  F+++G  V++        
Sbjct: 562 GITRKKNIELVITIPPDVPDHLVGDPTRLGQILLNLVSNAAKFTAEG-MVLVSVTGFTAL 620

Query: 714 -RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGG 770
             D  +  F+V++ G  +  +    +F  F         +  G GLGL+I +  +   GG
Sbjct: 621 PDDQVELRFAVRDTGIGMTPEQLGKLFQAFTQADSSTVRKFGGTGLGLTISKQLVEKMGG 680

Query: 771 HVSISSSDEGVTTINCR 787
            +  +S     +     
Sbjct: 681 AIEATSMAGEGSEFTFT 697


>gi|222529444|ref|YP_002573326.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456291|gb|ACM60553.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
          Length = 467

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 123/259 (47%), Gaps = 11/259 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN        +  +      +     E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPN-------NSDDEISELISSFNYMTEKLENLEMMRKSFISNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKKDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    AD+  + ++   +L NA+ ++  G  + +
Sbjct: 327 IVEELIKFEKRIEEKEIDVTLQVDEEL-VVKADKDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF           GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPERLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGVTTINCRI 788
            ++ + S +   +     +
Sbjct: 446 QNIWVESEEGVGSKFTFTL 464


>gi|322372854|ref|ZP_08047390.1| sensory box histidine kinase VicK [Streptococcus sp. C150]
 gi|321277896|gb|EFX54965.1| sensory box histidine kinase VicK [Streptococcus sp. C150]
          Length = 446

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 140/383 (36%), Gaps = 32/383 (8%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L               + ++S+GV      G+I + N   + L    +   
Sbjct: 74  LNDLSDVFRLTHENLAQEKNRLSSVLSYMSDGVIATNRRGQITMINSTAKRLLNI-DRET 132

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +    I ++    S Y       +L +         R +    + L     + +++I   
Sbjct: 133 ATQMSILDLLDGESPY----TYSELLSKTPEIHLSRRDANDEFVTLR----VNFALIRKE 184

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 185 SGFISGLVAVIHDATEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 233

Query: 595 KTSKLGSLNSKQS-QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
                G+LN + +  +++     +  ++ +++D+L L+ +D     L+         +  
Sbjct: 234 DD---GALNEEIAPNFIKVSLDETNRMMRMISDLLALSHIDNKSTHLDVEMTNFTAFMTY 290

Query: 654 VKQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
           +         +      +  I             D  ++ Q+   IL+NA+ +S  G  +
Sbjct: 291 ILNRFDQIKSQENNTGKDYEIIRDYPVNSIWVEIDTDKMTQVVDNILNNAIKYSPDGGKI 350

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
            +     +   I S+ + G  IP+     +F+RF          + G GLGLSI +  I 
Sbjct: 351 TVSMKTTDAQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIIK 410

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
            H G +   S     +T    +P
Sbjct: 411 QHNGFIWAKSEYGKGSTFTIVLP 433


>gi|228951141|ref|ZP_04113257.1| hypothetical protein bthur0006_5680 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808551|gb|EEM55054.1| hypothetical protein bthur0006_5680 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 463

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 112/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+   SK  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADI--ASKES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + + ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TPSEQRMRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERCIKVSFSCPPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISITEEHKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LH G+++++S  
Sbjct: 384 ITIEDEGEGIPPEDLPHIFDRFYRVDKARTRSTGGTGLGLSIVKEIVELHDGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DYGSCFIISLPS 455


>gi|167842316|ref|ZP_02469000.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           thailandensis MSMB43]
          Length = 809

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 151/394 (38%), Gaps = 28/394 (7%)

Query: 413 IWMFENLTVQVDLETKYN--TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
           + +F++   +  L           +    I+    G+A+      +  + P  RSL  T+
Sbjct: 53  LLLFDHRIFRPMLTRSVRVFESEHLSRTLIETAPVGLALID----LHSATPLIRSLAMTD 108

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL-LSDSVLEYS 529
                            +RY        +   +  +     + +  TL L   D     +
Sbjct: 109 LESAVDAPTPDLAKMLVARYVRRQKKRPIVGRLARN-----RVIHDTLTLARRDGRDTIA 163

Query: 530 IIPLPNAQT------MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
            + L  A+       ++   +VT     +R + E   A   A+  K++F+   S+E+R+P
Sbjct: 164 ALRLTQARYQGKDVLVVALTDVTAERELQRKMLEARRAAESANAAKSAFLAATSHEIRTP 223

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           L  I+G  +LL  +    L+  Q   +  +  +   L+ L+NDILD   +++G M     
Sbjct: 224 LHGILGNLELLGRT---PLSIDQLDRLNLVRQTGKHLVALINDILDFTRIESGEMWYERI 280

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFS 702
              + D+        A    E ++ +            + D  R+ QI   +LSNA+ F+
Sbjct: 281 PFDVFDVAERSLMLAAPSALEKSLALLCELRITNARMLIGDPNRIEQILRNLLSNAIKFT 340

Query: 703 SKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGL 756
             G       ++ A  ++ D + SV + G  I  +    VF  F         +  G GL
Sbjct: 341 HTGKITLTLEVVHAEPESQDLVLSVTDTGIGISPEQQAHVFEAFRQADETIARRYGGTGL 400

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           GLS+ + F     G +++ S+ +  +    RIP 
Sbjct: 401 GLSLCKRFAEGMHGTLTLRSTPDIGSRFTVRIPL 434


>gi|254254262|ref|ZP_04947579.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124898907|gb|EAY70750.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 1104

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 157/375 (41%), Gaps = 23/375 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGR-IKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
            K     +     ID    G+AVF P+ R + L N   R L+         G H+    A
Sbjct: 382 KKLVEAEEFNRSIIDTAPVGIAVFDPERRSVILENAVARHLFG------DAGPHVEFYEA 435

Query: 486 TCS-RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM-LTFV 543
               R  + +   D      + F+   K+  G + + + S    S         +    V
Sbjct: 436 VARAREQSMAVSSDRANTGHSFFEIPWKTASGEMYIGAAS----SATRFGGRDALLFGLV 491

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           ++T+    E  L +   A  +A+  K+ F+  +S+E+R+PL    G  +LL  +   SL+
Sbjct: 492 DITERKTTEAMLIDARRAADRANREKSIFLAIMSHEIRTPLHGATGHLELLSNT---SLD 548

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
           + Q + V  I  S   LL+L+ND+LD   ++A  + +N   I +N +     Q  A  + 
Sbjct: 549 AGQRERVGLIRRSFDSLLSLINDLLDTTRIEANALTVNALPIYVNRIAEYCAQHFAPTIL 608

Query: 664 ENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD---- 718
            +N+ +   +D  L   +  D QRL+QI   ++SNA  F+  G+  +     D  D    
Sbjct: 609 AHNVALHCYTDPALDRLLEGDDQRLMQILQNLVSNAAKFTQHGTISVSTTLLDRHDDRLW 668

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               V + G  IP  +   VF   V       RR  G GLGL +  +   L GG +++ S
Sbjct: 669 VRIEVADTGIGIPSALQAMVFKPLVQADASISRRFGGTGLGLFLCRNLAELMGGRITLQS 728

Query: 777 SDEGVTTINCRIPSK 791
                +T    +P +
Sbjct: 729 EPNVGSTFGIEVPLR 743


>gi|310641769|ref|YP_003946527.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309246719|gb|ADO56286.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 135/319 (42%), Gaps = 20/319 (6%)

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
           G     I +   R + +      F  +I +           L+ +S+   ++ I    N 
Sbjct: 56  GFFFFGIISMTVRRFIQPREQHFFTEMIDA-----------LKRISEG--DFHINLGWNF 102

Query: 537 QTMLTFVNVTDSV-RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
            T     + T    +   ++ +    L+  +E++ +F+ +VS+E+ SPLT+IIGF   LK
Sbjct: 103 GTRNGNHDRTHPYIQLVDSINDMAANLKVMEELREAFISNVSHEIGSPLTSIIGFAKALK 162

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
              L     ++ +Y+  I      L  L ++++ LA +D+     + S+  LN  L  + 
Sbjct: 163 DDNLD--REQRDRYLTIIETECIRLSKLSDNLMKLAVLDSERHPFHPSSYRLNKQLISLI 220

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
            +   +     I   +I D       AD   + Q++  +L NA+ F+ +G ++ +  + +
Sbjct: 221 LACEPQWEAKQI--DMIVDTHNVQVNADEDLMGQVWVNLLHNAIKFTPQGGSISVSLSSN 278

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVS 773
               +  + + G  I E   + +F RF        R   G GLGLSI      +H G +S
Sbjct: 279 GNQAVVCITDTGPGINEQDQQRIFERFYKADKSRTRTAGGSGLGLSIAHKITEMHSGSIS 338

Query: 774 ISSSDEGVTTINCRIPSKE 792
           +SS     T     +P +E
Sbjct: 339 VSSKVGEGTAFTVLLPLQE 357


>gi|255284210|ref|ZP_05348765.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255265235|gb|EET58440.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 368

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 3/253 (1%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           TM T               +  E L   + +K  F   VS+E ++PL+ I     LL+  
Sbjct: 107 TMNTPDKWDYLDVMIMDFNKMVEELGSMETMKTDFFSDVSHEFKTPLSVIYTNAQLLEKE 166

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +L      + +    I  SS  L NL+ ++L L  ++  +++    +  L   L++    
Sbjct: 167 ELPK--ETRRECTRNILRSSERLGNLITNMLKLNKLEKQVIQPVSQSYDLCRQLSDCALQ 224

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              +  E NI  +   + ++ + +AD   L  +++ +LSNA+ F+  G T+ L    D  
Sbjct: 225 FENQWEEKNIEFEAELEERV-TIMADEGLLELVWTNLLSNAVKFTPSGGTITLSQVSDGE 283

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           +   SV + G  + E+  K VF++F         +G GLGL++V+  + L  G +++ S+
Sbjct: 284 NVTVSVADTGCGMDEETVKHVFDKFYQGDASHSTQGNGLGLALVKRILQLSDGSITVEST 343

Query: 778 DEGVTTINCRIPS 790
               +     +P 
Sbjct: 344 AGKGSVFTVTLPL 356


>gi|170751052|ref|YP_001757312.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657574|gb|ACB26629.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 630

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 142/377 (37%), Gaps = 13/377 (3%)

Query: 426 ETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAA 485
             +           +  + + V     +GR+  ++ +   L  ++  RL     +  +  
Sbjct: 201 RERLRDNEARDRLLLSAIDDLVTWHDRNGRVLEASVSAVRLLGSDPARLRGHGLLERVHV 260

Query: 486 TCSRYY--NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA------Q 537
                +    SD                +   G  +  S    E     + +        
Sbjct: 261 ADRPAFLKAVSDVAATGRPATLPLRLHVEPETGRADGASLIYAEMRAHRIEHGPHDAAMA 320

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +    ++T+  R    L        +AD IK  F+ +V++ELR+PL  IIGF+++L   
Sbjct: 321 VVAVTRDMTEHHRHAAELERARAEAERADAIKGRFLANVTHELRTPLNAIIGFSEVLAGE 380

Query: 598 KLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
              SL   Q  +Y   I AS   LL +VN +LD++ + +G       T  + DLL     
Sbjct: 381 GAVSLGPVQAREYAGIIGASGHHLLGVVNTLLDMSRIQSGNFDCAPETFDVADLLRGCCD 440

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  K     + +     G +    AD     Q+   ++SNA+ F+  G  + L   R  
Sbjct: 441 LMRLKADAAGVALTAAPSGPV-EITADPAACRQVLINLISNAVKFTPSGGRIDLSLRRGA 499

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVS 773
           G     V + G  I  D    +   F        + Q  G GLGLS+V+  + LHGG + 
Sbjct: 500 GSLDIVVADTGVGIGADDLPKLGTPFFQAGSGGYKRQHEGTGLGLSVVQGLVGLHGGSLL 559

Query: 774 ISSSDEGVTTINCRIPS 790
           I S+ +  T +   +P 
Sbjct: 560 IESAPQAGTVVTVTLPL 576


>gi|167750379|ref|ZP_02422506.1| hypothetical protein EUBSIR_01353 [Eubacterium siraeum DSM 15702]
 gi|167656739|gb|EDS00869.1| hypothetical protein EUBSIR_01353 [Eubacterium siraeum DSM 15702]
          Length = 581

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 162/380 (42%), Gaps = 29/380 (7%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           T++ F   ++Q +++T      + +   ++ L +GV ++  D  +   N A   L    +
Sbjct: 222 TMFNFMRKSIQDNMKT-LEDEREKERFILESLQDGVILYDNDLSVISINRAGLKLLGASD 280

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSII 531
                     N A+T      + +   +  A   + +D   +++ T+      +L   + 
Sbjct: 281 ---------ENCASTVPELARKPEI--ISGAEKAANEDRTVTIESTV---DGRILLVQVF 326

Query: 532 PLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFT 591
           P+  +        +         +       R ++++K  F  +  +EL++PLT I GF 
Sbjct: 327 PVSKSGIDAMHGGLM--------VIRDVTDKRMSEQLKADFFANAGHELKTPLTAISGFA 378

Query: 592 DLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
           +LL+   +     K+  Y+  I   +  +  +++DIL++++++        +   L+++ 
Sbjct: 379 ELLENGLVPK--DKKDYYIGKILTEAKRMSTIISDILEISSLENKTTAEEVTDCKLSEIC 436

Query: 652 NEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
             VK+ +       N+ I++  D    +  A  + + ++   I+SNA+ ++  G  V + 
Sbjct: 437 TAVKECLEPAASAKNVTIELSGDS--FTVRAAYKHIYELVENIVSNAIKYNKDGGRVEIT 494

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHG 769
                      V++NG  IP++    VF RF         +    GLGLSIV+  +N +G
Sbjct: 495 LHDVGETGCIYVRDNGIGIPKESLNRVFERFYRVDKGRSTKEGSTGLGLSIVKHIVNCYG 554

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G V++ S     T +  R+P
Sbjct: 555 GTVTLDSELGKGTLVCVRLP 574


>gi|163850345|ref|YP_001638388.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|218528903|ref|YP_002419719.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|240137418|ref|YP_002961889.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens AM1]
 gi|254559597|ref|YP_003066692.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
 gi|163661950|gb|ABY29317.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
 gi|218521206|gb|ACK81791.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|240007386|gb|ACS38612.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens AM1]
 gi|254266875|emb|CAX22674.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens DM4]
          Length = 513

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 4/248 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS-LNSK 605
           +  +A+    E      +A+  K+ F+  +S+ELR+PL  I+GF++++K    G+ +   
Sbjct: 236 ELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHVAPA 295

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y   I  S   LLNL+N+ILDL+ ++AG   L    + L   + E +  +  +    
Sbjct: 296 YREYATDIHDSGMHLLNLINEILDLSRIEAGRYDLTEEAVQLAHTVEECRHMMTLRARSK 355

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVK 724
                 + D  L    AD + L QI   +LSNA+ F+  G  + +K     +G    SVK
Sbjct: 356 GQTFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYLSVK 415

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  IPED   +V + F   +   +   +G GLGL IV+  I+LHGG   + S     T
Sbjct: 416 DSGPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGT 475

Query: 783 TINCRIPS 790
            +    P+
Sbjct: 476 EVIVTFPA 483


>gi|303325669|ref|ZP_07356112.1| probable sensor/response regulatory hybrid protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863585|gb|EFL86516.1| probable sensor/response regulatory hybrid protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 885

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 152/370 (41%), Gaps = 33/370 (8%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
           YN   +      ++L     V G   R  L NPA       +     PG+ +R      S
Sbjct: 375 YNASRRSMEYVFENLE---RVLGIPMRACLENPAAL----FKHCIFKPGSRLREDFEAAS 427

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--NVT 546
                S+       II     E+  ++ +L    D+          + QT       ++T
Sbjct: 428 IRDARSEEC----YIINPATGEKCWIKFSLVPRDDA----------DGQTYYVISLSDIT 473

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +     R L +   A ++A + K+SF+  +S+++R+P+  IIG   + +         + 
Sbjct: 474 EEKAVRRLLKDSLAAAKQASKAKSSFLSAMSHDIRTPMNAIIGMATIAERHAGDP--ERV 531

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              ++ IS +S +LL ++N++LD++ +++G + L+ +   LNDL+ +    I   +    
Sbjct: 532 RDCLDKISVASRLLLGIINEVLDMSKIESGKLLLSNAPFDLNDLIRDTLDMIRPMLESRQ 591

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDFI 720
               +  D    +   D QR+ QI   +LSNA  ++     + L  +            I
Sbjct: 592 HEFHLHMDISQPALQGDTQRIQQILLNLLSNAAKYTPDKGRISLSISEKATLAPPMSRII 651

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSD 778
             V++NG  +  +  K +++ F  +      + +G GLG+ IV +   +  G ++I S  
Sbjct: 652 IVVEDNGFGMSPEFQKRIYDSFARSDDERVHRIQGTGLGMPIVRNLARMMHGSITIESEL 711

Query: 779 EGVTTINCRI 788
              +     +
Sbjct: 712 NQGSRFTVEL 721


>gi|298249702|ref|ZP_06973506.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547706|gb|EFH81573.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 520

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 86/509 (16%), Positives = 192/509 (37%), Gaps = 43/509 (8%)

Query: 303 DQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSA 362
            +      ++ +      + D    + + + +   +       ++       +       
Sbjct: 21  QREARLRALIEHSHEVSLLLDDQGTILYASPALTHVLGYLPEEISGQAMLSWV------- 73

Query: 363 NKLPEQLNWKTWKENIFSVYKSSETHKDT---WHLPNGQTLHVIVTS-----NPRGG-TI 413
                 L+     ENI S+   +     T   +   +G    + + +     +P+    I
Sbjct: 74  ----HPLDQSEASENIASLQAHTRQKLFTTQRYRHKDGSWRWLELRAVNKLADPQVAALI 129

Query: 414 WMFENLTVQVDLETKYNTLVKVQG-------ETIDHLSEGVAVF-GPDGRIKLSNPAFRS 465
               ++T   D E +   LV+            +  +  GV +   P G++ LSN   R 
Sbjct: 130 CSLRDITTLKDAEIEQQRLVEESDLAHTHLLTVLQQMPAGVMIAEAPSGKLLLSNDQVRQ 189

Query: 466 LWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLE-LLSDS 524
           +W       +            S     +      A  I   +  R+     L    +  
Sbjct: 190 IWHHSFPEANEVDKYDRYKGFHSDGTPYAGYEWPLARSIRQGESVREEEITFLRGDGTRG 249

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPL 584
           ++  S  P+ N Q  +    V     +ER          + +++K++F+  VS+EL++P+
Sbjct: 250 IMSVSSAPILNTQNEIIAGVVVFIDISERK---------RLEQLKDNFISMVSHELKTPV 300

Query: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYST 644
           T+I G+T LL+     S   +   ++  ++     L +L+N+IL ++ +D G++ L    
Sbjct: 301 TSIKGYTQLLQKHFQRSDEKQSLYFLAKMNYQLDKLTDLINEILSISQLDLGMLNLRPKV 360

Query: 645 IVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSK 704
             L +++ E  +S       + +++K +   +  +   D +R+ Q+   ++SNA+ +S  
Sbjct: 361 FDLVEVVREELESQQATTATHKLQLKGV---EKLTITGDCERIGQVIHHLVSNAIKYSPG 417

Query: 705 GSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVE 762
              V ++    +   +  +++ G  I  +    +F RF            G+G+GL +  
Sbjct: 418 RKQVCIEICHSDQAALIHIQDYGIGIDSEHFSRLFERFYRVDEPLEQTFPGLGIGLYLAH 477

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPSK 791
             I  H GH+ + S     +T +  +P +
Sbjct: 478 EIIQRHQGHIWVESQKGQGSTFSFSLPLQ 506



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 88/277 (31%), Gaps = 37/277 (13%)

Query: 182 TLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTE--TEGIVFQKAIGE 239
             +    +   +  + L +    +    D  G IL+A+ +         E I  Q  +  
Sbjct: 13  PERNSSPTQREARLRALIEHSHEVSLLLDDQGTILYASPALTHVLGYLPEEISGQAMLSW 72

Query: 240 SRKLFKEEIKKRMIS--SSALEKNFCETVSTLEHGNNKSYKIVRV-----LNSFGEAGIA 292
              L + E  + + S  +   +K F       + G+ +  ++  V               
Sbjct: 73  VHPLDQSEASENIASLQAHTRQKLFTTQRYRHKDGSWRWLELRAVNKLADPQVAALICSL 132

Query: 293 IDVSKEITVNDQLTHTYE-----------ILHNLTVAIAI-FDQNRYLQFHNRSFVELWE 340
            D++       +     E           +L  +   + I    +  L   N    ++W 
Sbjct: 133 RDITTLKDAEIEQQRLVEESDLAHTHLLTVLQQMPAGVMIAEAPSGKLLLSNDQVRQIWH 192

Query: 341 IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKD---TWHLPNG 397
                  + P  +E+ ++ R      +   +  ++  +    +  E+ ++   T+   +G
Sbjct: 193 ------HSFPEANEVDKYDRYKGFHSDGTPYAGYEWPLARSIRQGESVREEEITFLRGDG 246

Query: 398 QTLHVIVTSNP-------RGGTIWMFENLTVQVDLET 427
               + V+S P           + +F +++ +  LE 
Sbjct: 247 TRGIMSVSSAPILNTQNEIIAGVVVFIDISERKRLEQ 283


>gi|284053811|ref|ZP_06384021.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 784

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 157/368 (42%), Gaps = 31/368 (8%)

Query: 416 FENLTVQVDLETKYNTLVKVQG----ETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEE 471
           F  L  Q ++    N  +  +     + ++ L  GV V+  +G I  +N   + L++ E 
Sbjct: 421 FSELEEQNNISKALNRQLYDREYWLKQFLEALPVGVLVYDKNGNIYYANQKLKDLFRHEH 480

Query: 472 NRLSPGTHIRNIAATCSRYYNESDGWDLFAAI--ITSFDDERKSLQGTLELLSDSVLEYS 529
                   + + A   + Y N +D      A+  I +   +   ++       D  +  S
Sbjct: 481 IP---EVSLEDFAGINNLYLNGTDQVYPTKALPLIRALKGKIVPIENIEIRHPDQTICCS 537

Query: 530 I--IPLPNAQ-----TMLTFVNVTDSVRAE-------RALTEKNEALRKADEIKNSFVQH 575
           +   P+ ++       +  F ++T   +AE       + L EKN+AL++ DE+K+ F+ +
Sbjct: 538 LMATPIFDSDEAIVYGIAVFEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLAN 597

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDA 635
            S+ELR+PL  +IG ++ +     G L   Q Q +  I+ S   L  LVNDILD + +  
Sbjct: 598 TSHELRTPLNGMIGLSESMLDGVGGPLTELQRQNLSMIAKSGHRLSTLVNDILDFSKLRH 657

Query: 636 GIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKIL 695
             ++L    + L +++  +       +   +I +         +  AD  RL QI   ++
Sbjct: 658 QTLELKLQPLGLREIVEVIVVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLI 717

Query: 696 SNAMDFSSKGSTVILKAARDNGDF-----IFSVKNNGSSIPEDMCKSVFNRFVSNAHR-- 748
            NA+ F+  G TV + A+  + +      + ++ + G  IP D    +F  F        
Sbjct: 718 GNAIKFTDSG-TVKITASVLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTA 776

Query: 749 GQRRGVGL 756
            Q  G GL
Sbjct: 777 RQYGGTGL 784


>gi|218896945|ref|YP_002445356.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218545306|gb|ACK97700.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 357

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 114/239 (47%), Gaps = 6/239 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 118 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 175

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I + + 
Sbjct: 176 IETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDL- 234

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +     AD++ + Q++  ++ N++ F+  G T+ ++           + ++G  I E
Sbjct: 235 -DLEKVHVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISE 293

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    RIP
Sbjct: 294 EQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 352


>gi|307316767|ref|ZP_07596209.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306897389|gb|EFN28133.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 1126

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 118/242 (48%), Gaps = 4/242 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + + AL +  E    A+  K+ +V  +S+ELR+PL  ++G+  +L+  +  ++   + 
Sbjct: 656 HKKTDAALQDAKERAESANRAKSRYVVGLSHELRTPLNAVLGYAQILERDE--TIPPPRQ 713

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L+++      +     I
Sbjct: 714 GAIKAIRRSADHLSGLIDGLLDISKIEAGKLQVYSNEINIQDFLDQIVDMFRPQAQAKGI 773

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +      L  +V  D +RL QI   +LSNA+ F+ +G  +    A  +    F+++++
Sbjct: 774 AFEHNRAASLPQYVRTDDKRLRQILVNLLSNALKFTERG-RIRFDVAYRSQVASFTIEDS 832

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I E     +F  F       +  G+GLGL+I        GG +S++S  +  T    
Sbjct: 833 GRGISEKDLPRIFEPFQRGEAEYRMPGLGLGLTITRLLTQTLGGEISVTSEKDKGTAFKV 892

Query: 787 RI 788
           R+
Sbjct: 893 RL 894


>gi|228944402|ref|ZP_04106775.1| hypothetical protein bthur0007_5760 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815304|gb|EEM61552.1| hypothetical protein bthur0007_5760 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 462

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSHINISVTEEHKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG +++ S  
Sbjct: 384 ITIEDEGEGIPSEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVMSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|86750506|ref|YP_487002.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86573534|gb|ABD08091.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 530

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 4/247 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN-SK 605
           +  +A+    E       A+  K+ F+  +S+ELR+PL  I+GF++++K+   G+     
Sbjct: 242 ELEQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAVPV 301

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
             +Y   I  S   LLNL+N+ILDL+ ++AG  +LN   I L  ++ +    +  +    
Sbjct: 302 YKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRASSR 361

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVK 724
            I I  + +  +     D + + Q+   +LSN++ F+ +G  + LK     +G    SVK
Sbjct: 362 GITIHEVFEQGMPRIWGDERAVRQVVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLSVK 421

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + GS IPE+    V   F   ++  +   +G GLGL I +S +++HGG  ++ S     T
Sbjct: 422 DTGSGIPEEEIPVVLASFGQGSNSIKSAEQGAGLGLPIAKSLVDMHGGTFTLKSKLRIGT 481

Query: 783 TINCRIP 789
            +    P
Sbjct: 482 EVIVTFP 488


>gi|310818142|ref|YP_003950500.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391214|gb|ADO68673.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 558

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 5/230 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             +   +  VS++L++PL  +  G   LL+       +    ++   I  +S   L L++
Sbjct: 324 RAREDLLAVVSHDLKNPLGVVQLGAALLLRERPNVPRDEHVHKHATRIRDASDRALRLIS 383

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD   ++ G + L    +  + L+ E   SI      + +++ V     L   V DR 
Sbjct: 384 DLLDWGRLEEGRLPLETREVDASALVLEAVDSIRPLAEAHGLQVVVELPEGLPRVVCDRG 443

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+LQ+   +L NA+ F+  G  V + A     +    V++ G  IP +    VF+R+   
Sbjct: 444 RVLQVLGNLLGNAVKFTDPGGRVTVGARTQGDEARLYVRDTGKGIPPEQLSYVFDRYWQA 503

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI---PSKE 792
                R G GLGL+I +  +  HGG +   S+    +T +  +   PS E
Sbjct: 504 KDSVSR-GTGLGLAIAKGLVEAHGGRIEAQSTLGEGSTFSFTLHAVPSHE 552


>gi|239995910|ref|ZP_04716434.1| histidine kinase response regulator hybrid protein [Alteromonas
           macleodii ATCC 27126]
          Length = 542

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 2/242 (0%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK-TSKLGSLNSKQSQY 609
           A   L  KN  L +  + K+ F+ +VS+E+R+PL  I  F+ LL+  ++  +L S  +  
Sbjct: 156 AHLELKRKNRELERTSQFKSDFLSYVSHEIRTPLNAINTFSQLLEGEAQKLNLPSSFTTP 215

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           + ++S S   LL +VN +LD+  ++AG M++    +   D    +      +  ++ I  
Sbjct: 216 LSHVSQSGERLLEIVNSVLDIKQIEAGKMRVMPRAVNTKDFFTHLFSLTKIRAEDSGIVF 275

Query: 670 KVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
               D  +  S   D  +  Q+   +LSNA+ F++ G +V  +    NG  IF+V + G 
Sbjct: 276 STSIDDAVPDSLFFDDTKFGQVALNLLSNAIKFTNHGKSVKAQVKYKNGKVIFNVIDQGI 335

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            + +D  K +F  F    +  Q  G GLGL+I +  + L  G + +SS     T I+  +
Sbjct: 336 GMSDDDQKRLFTPFERMENARQISGTGLGLNISKRLVELMDGSIKVSSKLNHGTRISVTL 395

Query: 789 PS 790
           P+
Sbjct: 396 PA 397


>gi|229032322|ref|ZP_04188295.1| hypothetical protein bcere0028_43640 [Bacillus cereus AH1271]
 gi|228729102|gb|EEL80105.1| hypothetical protein bcere0028_43640 [Bacillus cereus AH1271]
          Length = 484

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 123/272 (45%), Gaps = 7/272 (2%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
            + +  L++ I P+ +   +       + +R  + L E  E   + +E +   + ++S++
Sbjct: 209 RIKEGNLDFQI-PVTSHDEIGQLNQGFEEMR--KKLKESIEMQTQYEENRKELISNISHD 265

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           L++P+T+IIG+ + +K   + +   K  +Y+  I   +  +  L++++   + +D   + 
Sbjct: 266 LKTPITSIIGYVEGIKDG-VANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVP 324

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
             + TI LN  + E+ + +   + E  I + +          AD +++ ++ S ++ N++
Sbjct: 325 FQFETIELNMFMQELLEEMQMDLSEEGIGVHLQLHSSPLYVTADCEKINRVISNLIHNSV 384

Query: 700 DFSSKGS-TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGL 756
            +  K    + +    DN   I  V +NG+ I  D    +F RF            G GL
Sbjct: 385 KYMDKEEKKITVTVLSDNNTVIMKVMDNGAGIEADTLPYIFERFYRAEQSRNSSTGGSGL 444

Query: 757 GLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           GL+I +  +  HGG +   S     T+I   +
Sbjct: 445 GLAIAKQIVEEHGGEIWAESKLGEGTSIFFSL 476


>gi|218264345|ref|ZP_03478202.1| hypothetical protein PRABACTJOHN_03893 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222076|gb|EEC94726.1| hypothetical protein PRABACTJOHN_03893 [Parabacteroides johnsonii
           DSM 18315]
          Length = 654

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 162/390 (41%), Gaps = 32/390 (8%)

Query: 424 DLETKYNTLVKVQGETIDHLS---------EGVAVFGPDGRIKLSNPAF----------R 464
           +LE +YN   +        +S         + + +      I LSN  +           
Sbjct: 272 ELEKRYNMNTERIMAQFLWMSYYNLVGEYDKALVIIDQLKHILLSNKRYNDWVTVEAIRA 331

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS 524
            ++      +      R+  A            DL         D+ +     LEL ++ 
Sbjct: 332 DIYYKMGRGMESAKAYRDSKAVHDSVIQAQYYEDLAKLRTQREVDKLELQSRKLELEAEK 391

Query: 525 VLEYSIIPLPNAQTMLTFVNV-----TDSVRAERALTEKNEALRKADEIKNSFVQHVSYE 579
               S I    A  +L    V         R    L    E   +AD +K++F+ ++++E
Sbjct: 392 SRVRSWIFGSGAIILLLLCGVLGFLAYSRHRYGARLKIAKEKAEEADHLKSAFLANMNHE 451

Query: 580 LRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK 639
           +R+PL  I+GF+ ++      S    + ++ + I  ++ +L  L+ D+LD++ +++  + 
Sbjct: 452 IRTPLNAIVGFSQVIAEE---SDIETRREFAKIIQNNNELLQRLIEDVLDISKIESNTLT 508

Query: 640 LNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAM 699
              +   L  L+ ++   ++ ++ E N+ +++  D    +   DR RL Q+ + +L+NA+
Sbjct: 509 FVLTDQDLQALMKDLYSIMSLRISE-NVELQLD-DCPRFTLRTDRNRLTQVLANLLTNAI 566

Query: 700 DFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS 759
             + +G  +        G+  F V + G  IPED  + VF+RFV         GVGLGL+
Sbjct: 567 KHTHEG-YIRFGYKVAAGEICFYVADTGEGIPEDQLEHVFDRFVKLTEWTT--GVGLGLA 623

Query: 760 IVESFINLHGGHVSISSSDEGVTTINCRIP 789
           I ++ +   GG + + S     +T +   P
Sbjct: 624 ISKALVAKLGGRMEVCSKQGEGSTFSVIFP 653


>gi|157828187|ref|YP_001494429.1| histidine kinase sensor protein [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932889|ref|YP_001649678.1| sensory transduction protein kinase [Rickettsia rickettsii str.
           Iowa]
 gi|157800668|gb|ABV75921.1| histidine kinase sensor protein [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907976|gb|ABY72272.1| sensory transduction protein kinase [Rickettsia rickettsii str.
           Iowa]
          Length = 497

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 238 TNYARQIIEEQLEINRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L+      
Sbjct: 298 R---DEEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLIL 354

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +  +  +  + +      +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 355 VKPRADQAAVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDEL 414

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 415 AKLVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMKGKFD 474

Query: 774 ISSSDEGVTTINCRI 788
           + S     TTI    
Sbjct: 475 LQSKINEGTTITITF 489


>gi|170720670|ref|YP_001748358.1| histidine kinase [Pseudomonas putida W619]
 gi|169758673|gb|ACA71989.1| histidine kinase [Pseudomonas putida W619]
          Length = 785

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 6/260 (2%)

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           + +A+T     +     ++ + L +  +      + + +F+ ++S+E+R+PL  ++G   
Sbjct: 270 IVSARTEELKASNGRLSQSNQELVQARQRALDMAQARAAFLANMSHEIRTPLNGMLGMIA 329

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           L   S    L S+Q Q +     S  +L+ L+NDILDL+  DAG ++L      L  ++ 
Sbjct: 330 LALDS---PLESEQRQQLSIAHDSGKVLVELLNDILDLSKFDAGQLELERIPFDLGAMVE 386

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
           +    ++    +N     +I+     S + D  R+ Q+ S +LSNA+ F+  G  V +  
Sbjct: 387 DTANLLSQNAAQNVELTCLIASDFPSSVLGDPTRVRQVVSNLLSNALKFTRFG-RVDVCL 445

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
               G     V++ G  I ED    +F  F         Q  G GLGL++  +      G
Sbjct: 446 TTIVGGVRLEVRDTGIGIAEDAQARIFQPFTQAGAGITRQYGGTGLGLALTRNLCKAMQG 505

Query: 771 HVSISSSDEGVTTINCRIPS 790
           H+ I S     +  +  +P 
Sbjct: 506 HLHIRSEPGLGSCFSAELPL 525


>gi|119896457|ref|YP_931670.1| phosphate regulon sensor protein [Azoarcus sp. BH72]
 gi|119668870|emb|CAL92783.1| phosphate regulon sensor protein [Azoarcus sp. BH72]
          Length = 423

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 146/400 (36%), Gaps = 39/400 (9%)

Query: 399 TLHVIVTSNPRGGTIW--MFENLTVQ----VDLETKYNTLVKVQGETIDHLSEGVAVFGP 452
           T   + T  PR    W  +F +++ +     D+  +    +    +    + +GV     
Sbjct: 40  TREPVGTPLPRAAGTWGKVFADMSRRSRLAYDMRERLAATLDRFRDASQAMPDGVMYLAE 99

Query: 453 DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
              I+  N      +           H R+I A  +    +                  +
Sbjct: 100 SDTIEWMNLKAEQHFGL--------DHTRDIGAPVTNLVRQPAFVQYLHG-----GHYEE 146

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSF 572
           SL           L+  +IP  + Q M+   +++   R E               ++  F
Sbjct: 147 SLVLPSTRPGGLTLQVQVIPFGDGQKMVLSRDISQLERLE--------------TMRQDF 192

Query: 573 VQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT 632
           V +VS+ELR+PLT + GF + L             +Y+      S  + +L+ D+L L+ 
Sbjct: 193 VANVSHELRTPLTVVGGFLETLIDGAGDFEPDDVQRYLRLALEQSNRMRHLIEDLLTLSA 252

Query: 633 VDAGIMKLNYSTIVLNDLLNEVKQSIATKMH-ENNIRIKVISDGKLGSFVADRQRLLQIF 691
           ++ G        + +  L+ +V           + + + + +D  L   +   + L   F
Sbjct: 253 LETGAPAPAEERVGVATLVRDVYAEAEALSSGRHQLSLVLDTDAVL---LGSHKELRSAF 309

Query: 692 SKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRG 749
           + + SNA+ ++  G  + +   +D+    F V+++G  I       +  RF         
Sbjct: 310 ANLCSNAVRYTPDGGRIEVGWRQDDAGGEFWVRDDGIGIDAQHIPRLTERFYRVDRGRSR 369

Query: 750 QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +  G GLGL+IV+  +  H   + + S+    +  + R P
Sbjct: 370 ETGGTGLGLAIVKHILTRHQAELHVVSTPGAGSRFSVRFP 409


>gi|225174724|ref|ZP_03728722.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169851|gb|EEG78647.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 530

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 6/240 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L     A  K +E +      +S+ELR+PLT + GF + ++   +    +   +Y+E I 
Sbjct: 288 LQNAQAASAKMEEDRTKLFAEISHELRTPLTAVQGFVEAIRDGMVPD-EAVLKRYLETIC 346

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
             +  +  LV+D+L L+ +++G + +    + L  L   V  S+      NN  ++ ++ 
Sbjct: 347 DQTVHITRLVDDMLSLSRLESGNITVEKLPLDLTALAQGVVTSMEGMAGGNNTTLQFVTK 406

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
                 + D  R+ QI   +L NA+  +  G T+ +         I ++ +NG  IP D 
Sbjct: 407 TGNSFVLGDVDRMEQIIRNLLKNAIKATKDG-TIKVGVEEQQKQVILTIADNGIGIPPDE 465

Query: 735 CKSVFNRFVSNAHRGQR----RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
              +++RF    ++  R     G GLGL IV+  + L  G + + S     TT     P+
Sbjct: 466 LPHIWDRFYRTKNQRDRYMQENGSGLGLVIVKKLVELQDGKIEVISRLGKGTTFTITFPT 525


>gi|156053730|ref|XP_001592791.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980]
 gi|154703493|gb|EDO03232.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2208

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 16/248 (6%)

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A+       +   +A + K+ F+ +VS+ELR+PL  +IG ++LL+ S    L   Q++  
Sbjct: 1660 AKAEALHNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS---DLRKDQAEMA 1716

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN----N 666
            + I  S+ +LL ++NDILD + ++A  MKL       ++++ EV +S++    +     N
Sbjct: 1717 DSIRVSADLLLTVINDILDFSKMEADKMKLFIVAFNADEMIREVVRSVSYSNRDKRSSRN 1776

Query: 667  IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-----RDNGDFIF 721
            + I    +        D  RL Q+   ++ N++ F+  GS + + A      +D     F
Sbjct: 1777 VEIIQDINLPQYLIYGDPVRLHQVLGNLIGNSLKFTENGS-ITVGAKTDWETKDTVKLTF 1835

Query: 722  SVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFIN-LHGGHVSISSSD 778
             VK+ G  IP      +F  F    +   RR  G GLGLSI +S I  + GG + + S +
Sbjct: 1836 WVKDTGIGIPRQQLLKLFKPFSQADNSTARRYGGSGLGLSICKSLIQSMMGGQIELESVE 1895

Query: 779  EGVTTINC 786
               T +  
Sbjct: 1896 NQGTIVWF 1903


>gi|266623520|ref|ZP_06116455.1| phosphate regulon sensor histidine kinase [Clostridium hathewayi
           DSM 13479]
 gi|288864691|gb|EFC96989.1| phosphate regulon sensor histidine kinase [Clostridium hathewayi
           DSM 13479]
          Length = 462

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 123/239 (51%), Gaps = 8/239 (3%)

Query: 556 TEKNEALRKAD---EIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
               E L + +   +I+  F  + S+EL++P+T++ G+ +LL++  +   + K   +V  
Sbjct: 226 KNVKEYLNQIELERQIRQEFFSNASHELKTPITSVQGYAELLESGIIQDEDQKM-DFVRR 284

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  + +L+NDIL ++ ++    ++    + +  +L++V +S+      +   + V 
Sbjct: 285 IKKEAVHMTSLINDILMISRLETKEAEVVCQDVRMAIVLDDVLESLKPLAAFH--EVLVH 342

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           ++ K     A+ +++ ++   +LSNA+ ++  G  V +    +N + I  V++NG  IP+
Sbjct: 343 AECKPLCIYANARQMTELLGNLLSNAIKYNKPGGEVWVTITEENREMIIRVRDNGMGIPK 402

Query: 733 DMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +    +F RF         ++ G GLGLSIV+  ++ + G +++ S  E  T    +IP
Sbjct: 403 ESLGRIFERFYRVDKGRSRKQGGTGLGLSIVKHIVSFYHGTIAVQSELEAGTEFTVKIP 461


>gi|254481247|ref|ZP_05094492.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214038410|gb|EEB79072.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 642

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 10/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + +R        L+ A   K++F+ ++S+E+R+PL  IIG T LL  +   + + K+  Y
Sbjct: 227 KRDRESENLVHDLKAATAAKSAFLANMSHEIRTPLNGIIGITSLLDQT---TDDKKRRAY 283

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              I  S+  LL ++NDILDL+ ++AG  + + S   L+++ N V++       E  I  
Sbjct: 284 YTTIENSANALLLIINDILDLSRIEAGRFEPDESNFKLDEVANHVRRVFEPSAKEKGIAF 343

Query: 670 K-VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAAR---DNGDFIFSVK 724
           + V++         D +RL Q+   ++ N + F+ +G+  V + A     D+    F V 
Sbjct: 344 EAVLAPRTPLDLTGDSRRLTQVIINLVGNGLKFTEEGAVSVAISAEDVSLDSATLHFQVF 403

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           ++G  I  +  K++F+ F        RR  G GLGLS+ +  + L GG + + S     +
Sbjct: 404 DSGIGITAEAQKNIFDDFSQVDGSITRRFGGTGLGLSVSKKLVELLGGEIGVQSRSGEGS 463

Query: 783 TINCRIP 789
               ++P
Sbjct: 464 RFWLKVP 470


>gi|189352589|ref|YP_001948216.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
            17616]
 gi|189336611|dbj|BAG45680.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
            17616]
          Length = 1218

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 152/377 (40%), Gaps = 13/377 (3%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                   + + +       ++ +   V V     R++  +P  ++L+   +        +
Sbjct: 704  ELKSRNEQLDRVNDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQALFGLPD------DSV 757

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                A  +  ++  D   +  + +    D E +           +V  Y          +
Sbjct: 758  GQPLAQLNSLFSAVDLERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADDRIDGAV 817

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SK 598
            L F ++     A            +A+  K++F+  VS+ELR+PL  I  +  +L T S+
Sbjct: 818  LAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSHELRAPLNVISSWAAVLMTASE 877

Query: 599  LGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G    +Q   + V  I     +   L++D+LD++ + +G   L+   +     +  V +
Sbjct: 878  RGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDSKPVDFAAAVRTVVE 937

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            S      +  I +             D +RL Q+ S ++ NA+ F+ +G  V +   R  
Sbjct: 938  SHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRLG 997

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 SV +NG  +  ++   +F+RF+ +     R   G+GLGLSIV+  +  HGG V+ 
Sbjct: 998  ALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTAHGGTVTA 1057

Query: 775  SSSDEG-VTTINCRIPS 790
            SS  EG  T +  RIP 
Sbjct: 1058 SSEGEGRGTRLTVRIPL 1074


>gi|254245733|ref|ZP_04939054.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184]
 gi|124870509|gb|EAY62225.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184]
          Length = 1220

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 152/371 (40%), Gaps = 13/371 (3%)

Query: 427  TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
             + +         ++ +   V V     R++  +P  ++L+   ++ +          A 
Sbjct: 712  QQLDRANDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQTLFGLSDDSVGQPM------AQ 765

Query: 487  CSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNV 545
             +  ++ +D   +  + +    D E +           +V  Y          +L F ++
Sbjct: 766  QNSLFSAADLERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADDRIDGAVLAFQDI 825

Query: 546  TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL---KTSKLGSL 602
                RA        +   +A+  K++F+  VS+ELRSPL  I G+  +L   +   + + 
Sbjct: 826  DALKRALGTAQSARDEAERANTAKDNFLALVSHELRSPLNVISGWAAVLMTARERGVSTD 885

Query: 603  NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM 662
                 + V  I     +   L++D+LD++ + +G   L+   +     +  V +S     
Sbjct: 886  EEMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDTKPVDFAAAVRTVVESNRPAA 945

Query: 663  HENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFS 722
             +  I +             D +RL Q+ S +L NA+ F+  G  V +   +       S
Sbjct: 946  EKKQITLVSAGLQGRAIVSGDARRLQQVASNLLGNALKFTPDGGRVEVALTQLGTLVELS 1005

Query: 723  VKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEG 780
            V +NG  +  ++   +F+RF+ +         G+GLGLSIV+  ++ HGG V+ SS  EG
Sbjct: 1006 VTDNGIGVKAELLPRLFDRFMQSDITRTRNYGGLGLGLSIVKHLVSAHGGTVTASSEGEG 1065

Query: 781  -VTTINCRIPS 790
              T +  R+P 
Sbjct: 1066 RGTRLTVRLPL 1076


>gi|120437377|ref|YP_863063.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
 gi|117579527|emb|CAL67996.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
          Length = 813

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 169/373 (45%), Gaps = 23/373 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +K +   ++  + +D + + V     D  ++ +N  F++    +EN L     I N    
Sbjct: 181 SKEDNEERITTQRLDSVVKSVKRVLTD--LEFANRQFQNEVIQKENELLNNDLILN--QQ 236

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
                 E +  +   ++      ER  +   +   + +++      +           + 
Sbjct: 237 LQSLLAELELKERENSV------ERAEIFQNMLNKTSNIIFLGGSVILLIILYFIINIIG 290

Query: 547 DSVRAER---ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           D  R++R    L E  E        +  F+  ++++LRSPLT ++G+TDL++ +    LN
Sbjct: 291 DVTRSQRYRVQLEEAKEFAESLLASREQFMAAITHDLRSPLTTVMGYTDLIQKT---DLN 347

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            KQ  Y+  I  SS  +L LVND+LDL+ ++AG M +   +    +L+ +   +I     
Sbjct: 348 EKQKHYLTQIKKSSEFILRLVNDLLDLSKLEAGKMLVEKLSFNPKNLIKDTVNNIIPAEK 407

Query: 664 ENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL----KAARDNGD 718
           + +++I++    +      +D  R+ QI + ++SNA  F+ KGS +I     +++ +N  
Sbjct: 408 KKDVKIQIEVSKETNVQIQSDPFRIKQILANLISNAWKFTEKGSILIAAKLQESSTENHI 467

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISS 776
               VK++G  I ++M  S+F  F       ++R  G GLGL+I +    L  G + ++S
Sbjct: 468 LEIRVKDSGIGISKEMQASIFEEFSQENSSIEKRFGGSGLGLAITKRLTELLEGKIKVNS 527

Query: 777 SDEGVTTINCRIP 789
                +     IP
Sbjct: 528 EQGKGSEFIITIP 540


>gi|94502132|ref|ZP_01308633.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65]
 gi|94425734|gb|EAT10741.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65]
          Length = 892

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 149/324 (45%), Gaps = 14/324 (4%)

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
                 I       ++     +  +L A +  S   E   L G++  ++ S L+ +   L
Sbjct: 178 WRFSRRITQPLGNVAKTLEHLESGNLDARVKLSRQAEFNELAGSINTMAAS-LQRAQTEL 236

Query: 534 PNAQTMLTFVNVTDSVRAE---RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
                  T          E     L         A + K+ F+ ++S+E+R+PL  I+GF
Sbjct: 237 QENIEQATDDLKQTLDELEVQNIELNLARREALDASQTKSDFLANMSHEIRTPLNGILGF 296

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
           T LL  ++   LN +Q +Y++ I +SST LL+++NDILD + ++AG + L+ + + ++D+
Sbjct: 297 TRLLSGTR---LNKRQLEYLQTIESSSTSLLSIINDILDFSKIEAGKLVLDQAPVNVSDI 353

Query: 651 LNEVKQSIATKMHENNIRI-KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
           +++V   +A + H+ +I +  ++        + D  RL QI + +++NA+ F+  GS ++
Sbjct: 354 IDDVITMLAPEAHKKHIELAALVYQDVPQEIMGDSLRLKQILTNLINNAIKFTHTGSVIV 413

Query: 710 -LKAARDNG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVES 763
            +      G      FSV++ G  + +D  K++F  F        RR  G GLGL I   
Sbjct: 414 RVMLEEQEGSDVTLKFSVQDTGIGMTDDQQKNLFKAFSQGDESTSRRYGGTGLGLVISRY 473

Query: 764 FINLHGGHVSISSSDEGVTTINCR 787
            +    G +   S+    +     
Sbjct: 474 LVEHMQGELGFDSTAHVGSEFFFS 497


>gi|307943374|ref|ZP_07658718.1| putative sensor histidine kinase transmembrane protein [Roseibium
           sp. TrichSKD4]
 gi|307773004|gb|EFO32221.1| putative sensor histidine kinase transmembrane protein [Roseibium
           sp. TrichSKD4]
          Length = 796

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/412 (21%), Positives = 171/412 (41%), Gaps = 18/412 (4%)

Query: 391 TWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLET-KYNTLVKVQGETIDHLSEGVAV 449
            W L +   L            I    +   +++    +     + Q   +  L + +  
Sbjct: 107 VWRLMDDDLLRKSRDREADQEKIKRLLDRCEELEDRLWERRESDERQASILSTLGDVIIR 166

Query: 450 FGPDGRIKLSNPAFRSLWKTEE-NRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
               G++  +N A R ++  ++  ++     +  +A      +NE       +A +   D
Sbjct: 167 RDTLGKVVYANAAAREIFGEKDSPKIGEAFSLSGLAVFDDFSFNEDQQP---SAAMGFGD 223

Query: 509 DERKSLQGTLELLS-DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADE 567
               +++G       DS +  +I   P  QT+L   +VTD    E  L     +   ++E
Sbjct: 224 LHLTTVEGERWFSRFDSPVRDAISQEPLVQTVL--RDVTDRRIIEEELLAARHSAESSNE 281

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
            K+ F+  VS+E+R+PL  I+G   LL+ ++   L  +Q  Y+E +  S   LL L++++
Sbjct: 282 AKSRFLATVSHEIRTPLNGILGMAALLRDTR---LTKEQIAYIEALETSGETLLFLIDEV 338

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA-DRQR 686
           LD + V+AG + +  +   L+ L + V + +A K H  ++ I    D +L   V  D  R
Sbjct: 339 LDFSKVEAGKLDIQTAPTRLSSLADSVVELLAPKAHAKSLEIGTRIDPRLPETVTLDATR 398

Query: 687 LLQIFSKILSNAMDFSSKGST-VILKAARDNGD---FIFSVKNNGSSIPEDMCKSVFNRF 742
           + QI   +  N + F+  G   + +    +  D    +  V++ G    +   + +F  F
Sbjct: 399 VRQILFNLAGNGVKFTDTGGVSIEVDGVENGSDGSLLVIQVRDTGIGFNDAEAERLFEEF 458

Query: 743 VSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
               H    +  G GLGL+I +    L GG +  ++   G       +P  E
Sbjct: 459 EQVDHGPARKFGGTGLGLAIAQRLTQLMGGQIRAAAVAGGGALFEVVLPIPE 510


>gi|296501408|ref|YP_003663108.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296322460|gb|ADH05388.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 463

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           + + ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TPSEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRICEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYIKVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSHINISITEEHKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 ITIEDEGEGIPLEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|291294703|ref|YP_003506101.1| histidine kinase [Meiothermus ruber DSM 1279]
 gi|290469662|gb|ADD27081.1| histidine kinase [Meiothermus ruber DSM 1279]
          Length = 360

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 7/263 (2%)

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
             I L   Q  L      +     +      EAL K ++ +   +  V++ELR+PL+ + 
Sbjct: 101 RAIALGQYQNRLKVQGDDELASLAQDFNRMTEALEKVEQHRTELLSSVAHELRTPLSALQ 160

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
           G+++ L    L        Q   +I      +  L++D+  ++ ++A  ++L+   + + 
Sbjct: 161 GYSEALADGVLPP-----EQAAAHIEREVRAMGRLIDDLALVSRIEAQAVELHPQVVAVE 215

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
               E  +  AT      + +K+       +  AD  RL Q+ S +LSNA+ ++  G  V
Sbjct: 216 AAFQEALERYATAFEACGVALKLNPLPSSVALWADPLRLQQVLSNLLSNALRYTPAGGEV 275

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFIN 766
           +L A+  +      V + G  IP +    +F RF            G G+GL+I +  + 
Sbjct: 276 VLSASLQSHHVRICVCDTGVGIPLEHQPRIFERFYRADPARSRHTGGSGVGLTIAKGLVE 335

Query: 767 LHGGHVSISSSDEGVTTINCRIP 789
             GG +   S     +     +P
Sbjct: 336 AMGGQMGFESEVGKGSCFWFTLP 358


>gi|227820615|ref|YP_002824585.1| sensor protein [Sinorhizobium fredii NGR234]
 gi|227339614|gb|ACP23832.1| sensor protein [Sinorhizobium fredii NGR234]
          Length = 755

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 148/373 (39%), Gaps = 25/373 (6%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D   + +   K+     D L +   V G DG+I  +N  F  +    + R      +   
Sbjct: 112 DRTERCSETAKLLSTIHDALGDIALVRGMDGKIVQANAVFSRVCGRVDVRGLTCASLG-- 169

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTL--ELLSDSVLEYSIIPLPNAQTMLT 541
                 +    D         T            +  E  S  ++ +SI      +    
Sbjct: 170 ----LSFEPRPDPDRFIVRFATPAGLRLYDWHDVVIREPASGRLMRHSIARDVTEEAQAV 225

Query: 542 FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGS 601
                  +RAE A            + K+  +  V++E+R+PL+ I+G + LL  ++   
Sbjct: 226 RRGEEARLRAEEA-----------SQAKSRLLATVTHEIRTPLSGILGMSHLLAQTQ--- 271

Query: 602 LNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATK 661
           L+++Q  Y+  +  S   L+ LV D++D +++ AG  +L+ S   L  ++  V + ++ +
Sbjct: 272 LSAEQRNYLADMQQSGHALVQLVEDLIDFSSLSAGRFQLHPSEQELRLVIENVVEMLSHR 331

Query: 662 MHENNIRIKVISDGKLGSFVA-DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            HE  I I V  D  +      D  RL Q+   ++ NA+ F+  G  V++ A    G   
Sbjct: 332 AHEKGIEIGVAIDASVPPRFGFDAARLRQVLFNVIGNAVKFTEAGG-VLVTADYGEGHVR 390

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSN-AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
             V ++G  +  D    VF  F     H  + +G GLGL+I    +   GG +  SS   
Sbjct: 391 IRVDDSGPGMSADELARVFEEFEQAGDHAQRSKGTGLGLAISRRIMEAFGGSLIASSVTG 450

Query: 780 GVTTINCRIPSKE 792
             +    R P  E
Sbjct: 451 EGSRFEIRFPVDE 463


>gi|171914541|ref|ZP_02930011.1| PAS/PAC Sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 385

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 5/241 (2%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ER         ++ + IK+ F+  +++ELR+PL  I+ +T++L TS   S  ++ +Q + 
Sbjct: 106 ERCRELDCLEAKRQNSIKDHFLAVLAHELRTPLQAIMAWTEVLATS--SSAPAELAQGLA 163

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I  S+     L+ D+LD++ + +G ++L    + L  ++      +        + ++ 
Sbjct: 164 VIRESAKGQSRLIEDLLDVSRMVSGNIRLEVQPVDLAAIIQLSVDMLKPLACSREVLVQT 223

Query: 672 ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
                LG   AD  RL QIF  +L+NA+ F+  G  + L        F F + +NG  I 
Sbjct: 224 SLSRSLGMAHADPIRLHQIFGNLLTNAIKFTPPGGHIHLHLDGTPSHFTFKIADNGQGIN 283

Query: 732 EDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSD-EGVTTINCRI 788
                 VF+RF+       RR  G+GLGLSIV+  + LHGG +  +S       T    +
Sbjct: 284 AAFLPYVFDRFLRGDTGTTRRHDGLGLGLSIVKHLVELHGGSIQAASDGLGKGATFTVWL 343

Query: 789 P 789
           P
Sbjct: 344 P 344


>gi|163858789|ref|YP_001633087.1| virulence sensor protein [Bordetella petrii DSM 12804]
 gi|163262517|emb|CAP44820.1| virulence sensor protein [Bordetella petrii]
          Length = 599

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 173/395 (43%), Gaps = 17/395 (4%)

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKT 469
           G  + +   +  Q  +     +L+      +D +   + +      +   N A+  L   
Sbjct: 67  GAALLLVGRMHRQRRILRTMRSLLHTYMTMLDAIPMPIYLRNSKLELTACNRAYAHLCGQ 126

Query: 470 EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS-VLEY 528
             + L+  +    + A  +   +  +    +   + S     +    T+ L S +  L++
Sbjct: 127 PRSALNLASVEATLRAMGANTLDARELERQYRLTMNSATPAIE--DRTVRLRSGTATLQH 184

Query: 529 SIIPLPNAQTMLT-----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
              PL      +      + +VT+  RA   L    +    A   K++F+  +S+++R+P
Sbjct: 185 WTSPLRGGGGKVIGVIGGWFDVTERHRALAELAGARDRAEAAYRAKSTFLASISHDIRTP 244

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           +  I+G  +L  T    SL +   Q +E    S+  LL L++D+LDL+ ++AG + L  S
Sbjct: 245 MNAIMGMLEL--TLLQDSLAAAARQQLEMALQSARSLLALIDDLLDLSKMEAGKLDLRPS 302

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            + L D+  EV    +   H   + + V          + D  RL QI + +LSNA+ F+
Sbjct: 303 IVSLRDIAAEVSGVFSPMAHSKGVALDVDIMPMVADHHLVDPLRLKQILNNLLSNAIRFT 362

Query: 703 SKGST-VILKAA--RDNGDFI-FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGL 758
            +GS  + ++A   RD   ++ F+V + G  I   +  ++F+ FV         G GLGL
Sbjct: 363 EQGSIQIQIRATSIRDAHQWVQFAVSDTGIGIEPAVLPTLFDPFVQAGASATVGGAGLGL 422

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRI--PSK 791
           SI +  +++ GG++ ISS     T +  R+  P K
Sbjct: 423 SICKRLVDIMGGYIRISSKRNQGTRVVVRLRFPVK 457



 Score = 42.2 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/151 (5%), Positives = 39/151 (25%), Gaps = 29/151 (19%)

Query: 178 LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTET--------- 228
           +       + + + +  +  + D++   ++ R+   ++   N +Y               
Sbjct: 76  MHRQRRILRTMRSLLHTYMTMLDAIPMPIYLRNSKLELTACNRAYAHLCGQPRSALNLAS 135

Query: 229 ---------EGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVS-----------T 268
                       +  + +    +L        +   +   ++   T+             
Sbjct: 136 VEATLRAMGANTLDARELERQYRLTMNSATPAIEDRTVRLRSGTATLQHWTSPLRGGGGK 195

Query: 269 LEHGNNKSYKIVRVLNSFGEAGIAIDVSKEI 299
           +       + +     +  E   A D ++  
Sbjct: 196 VIGVIGGWFDVTERHRALAELAGARDRAEAA 226


>gi|229177175|ref|ZP_04304564.1| hypothetical protein bcere0005_5510 [Bacillus cereus 172560W]
 gi|228606356|gb|EEK63788.1| hypothetical protein bcere0005_5510 [Bacillus cereus 172560W]
          Length = 463

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 110/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+       
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMRTERSEFLASVAHELRTPLTYVRGYADIALKETTS 266

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
               ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  +  + + +  
Sbjct: 267 P--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFITRIAEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYIKVSFSCPPTL-VVNLDEQRFEQVIINILNNAYRHSKEHSHINISVTEEHRRIF 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF        R   G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITIEDEGEGIPPEDLPHIFDRFYRVDKARTRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DYGSCFIISLPS 455


>gi|161521238|ref|YP_001584665.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
 gi|160345288|gb|ABX18373.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
          Length = 1214

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 152/377 (40%), Gaps = 13/377 (3%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                   + + +       ++ +   V V     R++  +P  ++L+   +        +
Sbjct: 700  ELKSRNEQLDRVNDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQALFGLPD------DSV 753

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
                A  +  ++  D   +  + +    D E +           +V  Y          +
Sbjct: 754  GQPLAQLNSLFSAVDLERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADDRIDGAV 813

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT-SK 598
            L F ++     A            +A+  K++F+  VS+ELR+PL  I  +  +L T S+
Sbjct: 814  LAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSHELRAPLNVISSWAAVLMTASE 873

Query: 599  LGSLNSKQ--SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G    +Q   + V  I     +   L++D+LD++ + +G   L+   +     +  V +
Sbjct: 874  RGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDSKPVDFAAAVRTVVE 933

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            S      +  I +             D +RL Q+ S ++ NA+ F+ +G  V +   R  
Sbjct: 934  SHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRLG 993

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 SV +NG  +  ++   +F+RF+ +     R   G+GLGLSIV+  +  HGG V+ 
Sbjct: 994  ALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTAHGGTVTA 1053

Query: 775  SSSDEG-VTTINCRIPS 790
            SS  EG  T +  RIP 
Sbjct: 1054 SSEGEGRGTRLTVRIPL 1070


>gi|317489324|ref|ZP_07947838.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|316911569|gb|EFV33164.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
          Length = 671

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 138/330 (41%), Gaps = 34/330 (10%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            D   + +A   SFD   K++  T +  + + SVL  +++        +           
Sbjct: 181 EDNQAIISAAARSFDQLYKAVGKTRQDTMFTASVLMTAVMVALVLFLAVIKRKNRQEREL 240

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           + +L    E  + A E K+ F+ +VS+++R+PLT I+G  D+           +  +  +
Sbjct: 241 QESLRCAMEKAQDASEAKSRFLSNVSHDIRTPLTAIMGLVDIAVEHI--DERDRVKECFD 298

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            +  SS  LLNLVND+LD++ +++G + L      L+ ++  +   +  +    ++   V
Sbjct: 299 KVQLSSHHLLNLVNDVLDMSKIESGQINLCCKPFDLHVVVETLGSIVRPQADSKHLTFSV 358

Query: 672 I-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------------ 718
           +  D + G  + D   + Q+   +L NA+ ++    TV L      GD            
Sbjct: 359 LRVDVEEGLVLGDEMHVNQVLINLLGNAVKYTEPSGTVSLAVEELRGDERVEYAAQHGLS 418

Query: 719 ---------------FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
                            F V+++G  + ++    +F+ F       R    G GLGLSIV
Sbjct: 419 LEPTSHDGFDMCIRLIRFIVEDDGIGMSKEFMSRLFDPFEREEVPTRLSVEGTGLGLSIV 478

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           ++  +L GG V + S     +     +P +
Sbjct: 479 KNLADLMGGTVQVQSERGRGSRFTLVLPFE 508


>gi|82523852|emb|CAI78595.1| signal transduction histidine kinase [uncultured candidate division
           OP8 bacterium]
          Length = 350

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 129/285 (45%), Gaps = 4/285 (1%)

Query: 510 ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIK 569
           ++ ++   + LL   VL +       A            + A      + + L  A   K
Sbjct: 55  QKTAMGEDVALLRGYVLPFFFGGGAAALVGYLNRRSRRHLMARLNAQAERDILLSASRAK 114

Query: 570 NSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDIL 628
           +  + ++S+ELR+PL  I+GF+  +K    G + ++K  +Y++ IS S + LL+L+NDIL
Sbjct: 115 SEVIANMSHELRTPLNAILGFSSAIKCETFGPMGHTKYREYIDDISHSGSHLLDLINDIL 174

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLL 688
           D++ ++AG M L+  +I +  +  E    +     EN + +       L     D +R  
Sbjct: 175 DVSAIEAGKMTLHEDSINVATIAKEAFHVVECLAVENQVMLAYDIAENLPPLFVDERRFK 234

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDN-GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           QI   + SNA+ F+  G +V L    D+ G    SV + G  +  D  K+    F     
Sbjct: 235 QIVLNLASNAIKFTPPGGSVTLGLRLDDQGRHTLSVTDTGIGMSADELKNALTPFGQLNS 294

Query: 748 --RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
               +  G GLGL + +  + LH G + I+S+    T +    P+
Sbjct: 295 HLARRHDGTGLGLPLTKGLVELHDGTLDITSTKGTGTIVTVVFPA 339


>gi|330807015|ref|YP_004351477.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375123|gb|AEA66473.1| Putative histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 744

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 118/268 (44%), Gaps = 5/268 (1%)

Query: 526 LEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLT 585
           +E + I        L   N       E  L  +    R+A + ++  V  VS++LRSP+T
Sbjct: 477 VEMAGISTKWTHGDLFAANDLRRSALENDLARQVRKERQAVQARDELVAVVSHDLRSPMT 536

Query: 586 NIIGFTDLLK---TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            I     +++   +S     + + S  ++ +  +++ +  L+ D+LD + +DAG   +N 
Sbjct: 537 VISMLCGMMRKAFSSDGSHSSKRISSAIDTMQQATSRMNALLEDLLDTSRIDAGRYTINP 596

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + ++ +  +    +        I I   ++  L    AD +RL Q+ S ++ NA+ F+
Sbjct: 597 QPMDVSQIFEDACSLLTPLATAKAIDISFHAEPNL-RINADPERLFQVLSNLIGNAIKFT 655

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +  TV + A     + +FSV++ G  I  +    VF R+ +    G   G GLGL I +
Sbjct: 656 PQQGTVGISAMSVGDEIVFSVRDTGEGIAPEQLPHVFERYWTTKE-GNPNGTGLGLYISK 714

Query: 763 SFINLHGGHVSISSSDEGVTTINCRIPS 790
             +  HGG +   S     +     +P 
Sbjct: 715 GIVQAHGGKLHAESQPGQGSEFRFTVPK 742


>gi|262384786|ref|ZP_06077918.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262293502|gb|EEY81438.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 571

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 168/386 (43%), Gaps = 26/386 (6%)

Query: 411 GTIWMFENLTVQVDLETKYNTLVKVQG------ETIDHLSEGVAVFGPDGRIKLSNPAFR 464
           G    F  +  ++  E + +TL  +          ++ ++E +     D +I  +N    
Sbjct: 202 GVAKSFNRMAERLT-EYRKSTLADIIQGKKYIEAIVNSITEPIIGLDRDRKILFANNEAL 260

Query: 465 SLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF--DDERKSLQGTLELLS 522
           ++   +   +        I  + S     S   DL   ++       E+K          
Sbjct: 261 TILNLKRENV--------IGKSASEL---SLRNDLLRRLVRELIQPGEKKESLKIYADNK 309

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +S  +   IP+   +     V V D +     L +     ++ D  K +F+  +S+EL++
Sbjct: 310 ESYFQVQYIPIRVLENGEAEVYVGDVI-----LLKNITEFKELDSAKTTFISTISHELKT 364

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P++ I+    LL+ +++G++N +Q    E I  SS  LL + +++L +  V+AG ++LN 
Sbjct: 365 PISAIMMSLKLLEDARVGAMNDEQKALAESIKESSNRLLEITSELLKMTQVEAGKLQLNP 424

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
                 +L+    ++   +    N  I+V    K+     D +++  + + +LSNA+ ++
Sbjct: 425 KITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSNAIHYT 484

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVE 762
            +   +I+ A +        V++ G  I     +S+F+R+       + +G GLGL+I +
Sbjct: 485 PENGRIIIGARQQGHSVEIYVQDFGKGIDPRYHQSIFDRYFRVPG-TKVQGSGLGLAISK 543

Query: 763 SFINLHGGHVSISSSDEGVTTINCRI 788
            F+  HGG +S+ S+    +T   + 
Sbjct: 544 DFVEAHGGTLSVDSAVGKGSTFVIKF 569


>gi|317494012|ref|ZP_07952428.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917785|gb|EFV39128.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 780

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 143/378 (37%), Gaps = 14/378 (3%)

Query: 415 MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
           +   +  +   + +      +    +D   + V     +      N A   L    E +L
Sbjct: 136 LQHEIDQREQAQIELEQQSALLRSFLDASPDLVYYRNENEEFSGCNRAMELLTGKSEKQL 195

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                        ++   E+D       +  +++       G       +  E   +P  
Sbjct: 196 IGLKPEDVYDEDIAKKVIETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFY 250

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +       +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L
Sbjct: 251 DRVGKRHGLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRIL 308

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
             ++   LN +Q  Y++ I  S+  L N+ NDI+++  ++   ++L+   I     L ++
Sbjct: 309 LDTE---LNQEQLNYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFLTDL 365

Query: 655 KQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +      +    +   +     L    +AD  RL QI   ++ NA+ F+ KG   +    
Sbjct: 366 ENLSGLLVQPKKLDFTLEHQPNLPHKILADGTRLRQILWNLIGNAVKFTQKGGVNVKVWR 425

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGG 770
              G   F VK++G  IP+D    +F  +     +   +   G G+GL++ +      GG
Sbjct: 426 ETGGKLFFEVKDSGIGIPQDEQDKIFAMYYQVKDQNGGKPATGTGIGLAVSKRLAQNMGG 485

Query: 771 HVSISSSDEGVTTINCRI 788
            + + S+    +     I
Sbjct: 486 DIVVRSTPGEGSCFTLSI 503



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 166 LRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKN 225
            R+  LD +  E+ +      +L    ++ +   D+   LV++R++  +    N + +  
Sbjct: 128 ARLQVLDTLQHEIDQREQAQIELEQQSALLRSFLDASPDLVYYRNENEEFSGCNRAMELL 187

Query: 226 TETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSY 277
           T   G   ++ IG +   ++ E+I K++I +   EK F   VS           G    +
Sbjct: 188 T---GKSEKQLIGLKPEDVYDEDIAKKVIETD--EKVFRHNVSLTYEQWLVYPDGRKACF 242

Query: 278 KIV------RVLNSFGEAGIAIDVSKEITVNDQLTH 307
           ++       RV    G  G   D+++     D L +
Sbjct: 243 ELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|300865341|ref|ZP_07110152.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300336644|emb|CBN55302.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 945

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 28/263 (10%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L     A   A+  K+ F+ ++S+ELR+PL  I+G+  +L+ S+  +L SK+ + +  
Sbjct: 442 QELEAAKVAADFANHAKSEFLANMSHELRTPLNGILGYAQILERSQ--ALASKELEGIRI 499

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I      LL L+NDILDL+ ++A  + L  + +  ++ L  V +    K  + +I     
Sbjct: 500 IHQCGDHLLTLINDILDLSKIEARKLDLYPTELRFHNFLISVAEICRIKAVQKSIDFSPP 559

Query: 673 SDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST---VIL--------------KAAR 714
              +L     AD +RL Q+   ++ NA+ F+  G     V +                  
Sbjct: 560 KVSELPLKIYADEKRLRQVLINLIGNAIKFTDSGGVSFKVEILSKSECSLEDNNLWTTET 619

Query: 715 DNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLH 768
           +N         FS+++ G  +  +    +F  F           G GLGL+I +  +NL 
Sbjct: 620 ENNQFSAAKIRFSIEDTGIGMTSEQLNKIFLPFEQVGDKSRMATGTGLGLAISQRIVNLM 679

Query: 769 GGHVSISSSDEGVTTIN--CRIP 789
           G  + + S     +       +P
Sbjct: 680 GSQLEVVSQFGEGSIFWFDVELP 702


>gi|229894116|ref|ZP_04509302.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides A]
 gi|229704001|gb|EEO91014.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides A]
          Length = 704

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 160/367 (43%), Gaps = 31/367 (8%)

Query: 428 KYNTLVKVQGETIDHLSEGVAVFG-PDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           +     +   + +     G+++    DG   LSN     L     + L+     R     
Sbjct: 108 RLEEHEQFNRKIVASAPVGISILRISDGTNILSN----ELAHNYISLLTNEDRERITRII 163

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVT 546
           C R  N       F  ++TS ++   +LQ +         + +I            V+V+
Sbjct: 164 CERQAN-------FVDVMTSNNN---NLQISFVHSRYRNEDVAI---------CVLVDVS 204

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
             V+ E +L E   A  +A + K+ F+  VS+ELR+PL  IIG  DLL+T +   L    
Sbjct: 205 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE---LPQGV 261

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + V  ++ SS +LL +++DILD + +++  +K+  S     +++  +  +    + +  
Sbjct: 262 DRLVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKR 321

Query: 667 IRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           + +    +  +   +  D  RL Q+ S +L+NA+ F+  G  +IL+    +    F V++
Sbjct: 322 LGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRDCYLEFRVRD 380

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I       +F+ F       QR  +G GLGL+I E  +NL  G V + S     + 
Sbjct: 381 TGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSI 440

Query: 784 INCRIPS 790
              RIP 
Sbjct: 441 FAIRIPL 447


>gi|170725402|ref|YP_001759428.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169810749|gb|ACA85333.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 819

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 84/417 (20%), Positives = 161/417 (38%), Gaps = 47/417 (11%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDH----------LSEGVAVFGPDGRIKLSNP 461
                 + T + +  T  N  ++ +   +D            SE   ++  D R   +N 
Sbjct: 123 ITGSLTDRTQEKEALTALNLAIEARDNALDAGDIGNWQAELNSENEWIWSWDNR---ANK 179

Query: 462 AFRSLWKTEENRLSPGTHIR------NIAATCSRYYNESDGWDLFAAIITSFDDERKSLQ 515
            F    +   N      H+        I A            + + +++   D E   + 
Sbjct: 180 MFALQPEDIGNIDRWVQHLHPDDKEPAIDAIQHCLVTGEIYNEQYRSVL--PDGEVIYVH 237

Query: 516 GTLELLSDSV--------LEYSIIPLPNAQTMLTFVNVTDSVRAER---ALTEKNEALRK 564
              ++  D          +  +  P  N Q  L   N     R +     L +  E   +
Sbjct: 238 ARAKIGRDDQNRICRIDGVCVNQTPFFNIQAKLQEANDQAEARVKARTLELQQAKERAEQ 297

Query: 565 ADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
           A++ K+SF+  +S+ELR+P+  ++     L    L     +    +E  + S+  L+ ++
Sbjct: 298 ANQTKSSFLSMMSHELRTPMNAVL---GSLDLLSLSKQTPESRDLIETATTSAKNLIFIL 354

Query: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-AD 683
           NDILD+  ++AG M+L      + ++++ V Q      +   I++ V  D  +  ++  D
Sbjct: 355 NDILDINKIEAGKMQLEQRDFSITEVIDNVVQIYYPLANGKRIKLDVTEDPTIPKYLEGD 414

Query: 684 RQRLLQIFSKILSNAMDF----SSKGSTVILKAARDNGD-----FIFSVKNNGSSIPEDM 734
             ++ QI   +L NA+ F    + K   V L       +       FS+ +NG  I ++ 
Sbjct: 415 AVKVRQIIFNLLGNALKFTSTTTEKQGEVQLNINIVEHNSIIYKVAFSIVDNGIGIEKET 474

Query: 735 CKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            K +F  F+       R   G GLGL+I  +   L GG ++++S     +T    +P
Sbjct: 475 QKKLFTPFIQAQRSTTREYGGTGLGLAICGNLAQLMGGEIALTSCPNEGSTFKVELP 531


>gi|104782644|ref|YP_609142.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95111631|emb|CAK16352.1| putative sensor histidine kinase/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 642

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 114/250 (45%), Gaps = 11/250 (4%)

Query: 546 TDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSK 605
            +  +A   L +  E   +A+  K+ F+  +S+ELR+P+  ++G   LL+T++   L S+
Sbjct: 241 HEQQQAMGQLIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTQ---LTSE 297

Query: 606 QSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
           Q++Y    S S+  LL ++NDILD + ++   ++L +    L +L++   QS      + 
Sbjct: 298 QTEYTAVASESTGHLLKVINDILDFSRIERTTLELEHIDFNLGELISSSVQSFQHTAQQR 357

Query: 666 NIRIKVISDG--KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNGDFI-- 720
            + + +           V D  R+ QI   ++ NA+ F+ +G   V  +    +   +  
Sbjct: 358 GLDLHLQLPAGIDHLQVVGDPTRIRQILLNLVGNALKFTERGEVAVEARWQVLDRQLLWF 417

Query: 721 -FSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
             +V++ G  I  +  + +F  F         +  G GLGLSI  +     GG +   S 
Sbjct: 418 TCTVRDTGIGIDSNRLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAERMGGQLRGESR 477

Query: 778 DEGVTTINCR 787
           +   +T    
Sbjct: 478 EGLGSTFTLE 487


>gi|163846453|ref|YP_001634497.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524228|ref|YP_002568699.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163667742|gb|ABY34108.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448107|gb|ACM52373.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 466

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 6/236 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               EAL++AD+ +      +++ELR+PL+ I G  + ++     +     ++ +E +  
Sbjct: 214 NRMAEALQQADQQRRQLTADIAHELRTPLSIIKGRLEGIQDGVYEAD----AEQIEALLT 269

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
              +L  L+ND+  LA  DAG + L    +    L+NE  +S     +E N+R+    D 
Sbjct: 270 EVALLERLINDLHLLALADAGQLPLYREVVSPQMLVNEAIRSFTPAANERNVRLSATIDD 329

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
            L     D QR+ Q+   ++ NA+  +  G  VI+ A RD     F V++ G+ I     
Sbjct: 330 NLPDIEVDPQRIAQVLGNLIGNALRHTPAGGEVIVSAHRDESGIRFEVRDTGAGIDPADL 389

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
             +F+RF        R   G GLGL+I    +  HGG +  +S+ +  TT++ R+P
Sbjct: 390 PYIFDRFYKADRARSRSSGGAGLGLAIARRLVEAHGGQIWATSALQQGTTVSFRLP 445


>gi|295109067|emb|CBL23020.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 658

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 161/414 (38%), Gaps = 51/414 (12%)

Query: 411 GTIWMFENLTV------QVDLETKYNTLVKVQG-----------ETIDHLSEGVAVFGPD 453
               + ++++       + + E +   L                E +D  + GV  +   
Sbjct: 113 AVTGIHQDISETVRIEKEKEAERRLAELNDSLRKEKLRQDIYYKELLDIENCGVLAYTMP 172

Query: 454 G-RIKLSNPAFRSLWKTEENRL----------SPGTHIRNIAATCSRYYNESDGWDLFAA 502
           G ++   N     ++  E                     ++     +  NE D  D    
Sbjct: 173 GHKVIHMNAEALRMYGIESVEAAQRELGPLLRQVYYPDSDVLNQLKKLRNEDDMVDYECI 232

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
           I     +E  +L  +         +   IP      + TFV+V+D V  + AL    E  
Sbjct: 233 IGKGKANECHALAKS---------KVVHIPTGERAVLTTFVDVSDMVMLKNALRRAEEG- 282

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
                 K+SF+  +S++LR+P+  IIG+ +L++           + Y++ +  +S  LL 
Sbjct: 283 ---SRAKSSFLFAMSHDLRTPMNAIIGYAELME--AHWGEKEAATNYLQKLKGASQFLLA 337

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA 682
           L+ ++L++A +++G   LN +   L  L   +   +  ++    + +    + +  +   
Sbjct: 338 LIGNVLEIARIESGKETLNEAPWNLMKLEETLDILLDREISRKQLTVNRNVNIRHANVYC 397

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG------DFIFSVKNNGSSIPEDMCK 736
           D  ++ +I   +LSNA+ ++++G  ++L                  V +NG  I ++   
Sbjct: 398 DALKIREIIMNLLSNAVKYTAEGGKIVLDIEEKPSVQDDFMTLQIRVSDNGIGISKEYIP 457

Query: 737 SVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            +F+ F       +    G GLGL IV+SF++L  G +S+ S     T     I
Sbjct: 458 HIFDAFTRERSSSESGIIGTGLGLHIVKSFVDLMNGDISVESESGKGTCFTVEI 511


>gi|228900581|ref|ZP_04064803.1| hypothetical protein bthur0014_17840 [Bacillus thuringiensis IBL
           4222]
 gi|228859064|gb|EEN03502.1| hypothetical protein bthur0014_17840 [Bacillus thuringiensis IBL
           4222]
          Length = 351

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 116/242 (47%), Gaps = 6/242 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           +++ +  + L   ++++  FV +VS+E++SPLT+I GF   L+   L     K+  Y+  
Sbjct: 112 KSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLS--EEKRKHYLTI 169

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +T L  L  ++L L  +++        +  L+  L ++  +      E  I + + 
Sbjct: 170 IETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDL- 228

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
            D +     AD++ + Q++  ++ N++ F+  G T+ ++           + ++G  I E
Sbjct: 229 -DLEKVHVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISE 287

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +  + +F RF        R   G GLGL+IV+  ++LH G + + S +   T    RIP+
Sbjct: 288 EQKQHIFERFYKADSSRNRASGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIPN 347

Query: 791 KE 792
            E
Sbjct: 348 YE 349


>gi|14193095|gb|AAK55818.1|AF219111_2 putative histidine kinase [Streptococcus pneumoniae]
          Length = 449

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 146/380 (38%), Gaps = 28/380 (7%)

Query: 416 FENLTVQVDLETK-YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+  + L  +      K     + ++++GV      G+I + N   +      +  +
Sbjct: 75  LNDLSEVIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDV 134

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
                   +  +        + ++L   I  S +    S     E L+  V  +++I   
Sbjct: 135 --------LNRSILELLKIEENYELRDLITQSPELLLDSQDINGEYLNLRV-RFALIRRE 185

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 186 SGFISGLVAVLHDTTEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 234

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L    +    +++     +  ++ +V D+L L+ +D     L+   I     +  +
Sbjct: 235 DEGALCETVAP--DFIKVSLDETNRMMRMVTDLLHLSCIDNATSHLDVELINFTAFITFI 292

Query: 655 KQSI-ATKMHENNIRIKVISDGKLGSFV--ADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
                  K  E   + +++ D  + S     D  ++ Q+   IL+NA+ +S  G  + ++
Sbjct: 293 LNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVR 352

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHG 769
                   I S+ ++G  IP+     +F+RF        R   G GLGLSI +  I  H 
Sbjct: 353 MKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHK 412

Query: 770 GHVSISSSDEGVTTINCRIP 789
           G +   S     +T    +P
Sbjct: 413 GFIWAKSEYGKGSTFTIVLP 432


>gi|323705668|ref|ZP_08117241.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534886|gb|EGB24664.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 464

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 131/296 (44%), Gaps = 16/296 (5%)

Query: 499 LFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           + + I+ +F  +  K L    +++S+   +Y +                +  R   A  +
Sbjct: 180 ILSLIVAAFITKPLKRLTDATKIISEGKFDYKV----------DVKGNDEIGRLADAFND 229

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
               L K DE +  FV   S+EL++PL  I    + L +S    ++    ++++ I++  
Sbjct: 230 MGTKLMKIDEERKRFVSDASHELKTPLAAIKALVEPLISSDNVDISV-YKEFLKDINSEV 288

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +  LVN++L LA +D  I  +   T  + ++   V +++     +  + +   ++  +
Sbjct: 289 DRMTRLVNELLVLAKID-KIRSIENKTENITEIAYNVIENLEAIADQKGVSLIFENEKNI 347

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            + V D  R  ++   ++ N + ++  G +V L    D+ +   ++ + G  I ++    
Sbjct: 348 FADV-DADRFYRMIYNVVENGIKYTPSGGSVKLTLDSDDKNVYITISDTGIGISQETLPK 406

Query: 738 VFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VF RF         +  G GLGL+IV+  ++LH GH+ + S+    T     IP K
Sbjct: 407 VFERFSRGDTARSQKTGGFGLGLAIVKEIVDLHKGHIDVKSTVGEGTVFYITIPVK 462


>gi|227112764|ref|ZP_03826420.1| aerobic respiration control sensor protein ArcB [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 789

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 151/381 (39%), Gaps = 20/381 (5%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E ++ +   + +      +    +D   + V     D      N A   L    + +L  
Sbjct: 138 EEMSRREQAQIELEQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLVGKSQKQLIG 197

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
            T     +   +    E+D       +  +++       G       +  E   +P  + 
Sbjct: 198 LTPQDVYSPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDR 252

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
                 +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  
Sbjct: 253 MGKRHGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLD 310

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           ++   L+ +Q +Y++ I  S+  L N+ ND++++   +   ++L+   I     L +++ 
Sbjct: 311 TQ---LDPEQQKYLKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLEN 367

Query: 657 SIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKG-----STVIL 710
                     +++ +     L    + D  RL QI   +LSNA+ F+ KG       +++
Sbjct: 368 LGGLLAEPKGLKLIMDQHQPLPQKVITDGTRLRQILWNLLSNAVKFTPKGENGKKGEIVV 427

Query: 711 KAARDNGD-FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFIN 766
           +   + GD   F V+++G  IP D  + +F  +     +   +   G G+GL++ +    
Sbjct: 428 RVWHEKGDRLRFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGTGIGLAVSKRLAQ 487

Query: 767 LHGGHVSISSSDEGVTTINCR 787
             GG + +SS+    +     
Sbjct: 488 NMGGDIQVSSTQGKGSCFTLT 508



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 27/206 (13%)

Query: 121 FHHYIKLSKATEKLRKEGQSFDLVAETQNDCAI-----KIEGRVSGSCAFLRILSLDGIY 175
                +L+K   KL +E +  DL    Q    I     +I  R+    A  R L +  + 
Sbjct: 81  EESRQRLAKLVAKL-EEMRHRDLELNAQLQENIAQLNQEIADRIKAEDA--RALVMSRLK 137

Query: 176 SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQK 235
            E++       +L    ++ +   D+   LV++R++  +    N + +      G   ++
Sbjct: 138 EEMSRREQAQIELEQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLV---GKSQKQ 194

Query: 236 AIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYKIVRVL---- 283
            IG   + ++  +I ++++ +   EK F   VS           G    +++ +V     
Sbjct: 195 LIGLTPQDVYSPDIAEKVMETD--EKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDR 252

Query: 284 --NSFGEAGIAIDVSKEITVNDQLTH 307
                G  G   D+++     D L +
Sbjct: 253 MGKRHGLMGFGRDITERKRYQDALEN 278


>gi|270308765|ref|YP_003330823.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
 gi|270154657|gb|ACZ62495.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
          Length = 1092

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 130/832 (15%), Positives = 271/832 (32%), Gaps = 65/832 (7%)

Query: 1   MMAGMATIGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILLIRQR-----NSLAKKV 55
           + AGM  + +     I +    +IA        +   I+ ++ L ++      + L+   
Sbjct: 140 VHAGMLGLMLALPGGISSTVISEIAFPVLTIFPIAGLIVCLLFLDQESYYSTISHLSLSE 199

Query: 56  NETYSFLSEICDQLSKYHSLLTENNCLTIVWDG-------KDETPEIIG-QLHQRIDIPQ 107
           ++  + L  I +   K       +   TI WD        +   P I G    + I    
Sbjct: 200 HKLKTALEAIKESSEKLRLHTQNSPLATIEWDADFIVTRWEGAAPHIFGWGASETIGKSV 259

Query: 108 TDTDLLSFENWLKFHHYIKLSKATEKLRKEGQSFDLVAE---TQNDCAIKIEGRVSGS-C 163
            D +++             + +  + L++   S  +      T++   I      S    
Sbjct: 260 YDLNIVY------EPDAPIVEQTIKTLKEGISSQVVTLNRNYTKDGRVIHCTWYNSALYD 313

Query: 164 AFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYK 223
           +  +++S+     +  E       L+ +   ++ L++         DQ G  +  N  + 
Sbjct: 314 SNNKMISMMSQVEDSTEHERIETALAENEKHYRELYEQSPAGYQSLDQNGVFIEVNRLWL 373

Query: 224 KNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVL 283
               T G   ++ IG     F           +                  K  +I+ V 
Sbjct: 374 D---TLGYQKEEVIGHWFGEFVASEDLDKFKKNFPRFVKAGHTHVDFKMKRKDGQIIIVA 430

Query: 284 NSFGEA-----------GIAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYL 328
                A            I  D+++    E    +       + ++   AI +      L
Sbjct: 431 FEGRIAYTPKGEFKQTHCIIQDITERYKAEEATREHKERYEALFNSNNDAILVHQPQGEL 490

Query: 329 Q-----FHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNW--KTWKENIFSV 381
                   N + + L   +   L          +  ++ N   E +    ++ ++     
Sbjct: 491 TPGTFIEANDAAITLLGYNREELLKLSP----FDITKNDNMSSEPVKRTMESLRQTGKVQ 546

Query: 382 YKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETID 441
            +    HKD   +P      +          I +  ++T +   E       +    T D
Sbjct: 547 NERIFIHKDRHEIPVEINARLFKY-KGIDTVITIVHDITTRKQAEAALTHAAEEWRTTFD 605

Query: 442 HLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA 501
            + + +A+  P   I   N AF +    + N L        I      +        L +
Sbjct: 606 SIKDMIAIVDPKHTILRVNLAFANALGFKPNDLVGKHCYEVIHGMNQPHPMCPHARTLQS 665

Query: 502 AIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEA 561
             + S +   K L+  +E  S  + +       +   +            ++ L  K E 
Sbjct: 666 KHVESSEYYDKKLKLWVEASSSPIFDNKGDLTGSVHVIKDISKRKQEELQQQQLRNKAEM 725

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +   +       +++E+ +PLT +IGF++LL   K   L       ++ I+  S    
Sbjct: 726 SSRLAAV-GEMAAGIAHEINNPLTGVIGFSELLLERK--DLPDDVKDNLQIINEGSQRAR 782

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            ++  +L  A           + + +  L++   +     +   NI++    D  L   +
Sbjct: 783 EIIKRMLTFAR----QSTPQMNRVDITSLIDHTLELRNYVLATANIKVIKDYDANLPWVI 838

Query: 682 ADRQRLLQIFSKILSNA---MDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSV 738
           AD  +L Q+F  ++ NA   M  +     + ++          SV ++G  +P+++ K +
Sbjct: 839 ADPGQLQQVFLNLIVNAEHAMKKAHDKGILTIQTKSLGDSIRISVTDDGPGMPDEVLKKL 898

Query: 739 FNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           F  F +    G   G GLGLS+    I  H G +   S     TT    +P+
Sbjct: 899 FQPFFTTKEPG--EGTGLGLSLSLGIIQEHNGTIRAESKAGKGTTFIVELPA 948


>gi|254235813|ref|ZP_04929136.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719]
 gi|126167744|gb|EAZ53255.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719]
          Length = 786

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 8/241 (3%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L E  +      + + SF+ ++S+E+R+PL  ++G       S  G L  +Q Q +  
Sbjct: 290 QELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGML---SLSLDGPLTPEQRQQLSI 346

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
              S  +L+ L+ND+LDL+  +AG + L      L  L+ +    ++       + +  +
Sbjct: 347 AHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASLLSQNAAA-GVELTCL 405

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
            D  L +    D  R+ Q+ S +LSNA+ F+  G  V ++          SV++ G  I 
Sbjct: 406 VDPALPAQVSGDPTRIRQVVSNLLSNALKFTRLG-RVDVRVEATAEGVRISVRDTGIGIA 464

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           ++    +F  F         Q  G GLGL++         G +++ S+    +  +  +P
Sbjct: 465 QEALDRIFQPFTQADASITRQYGGTGLGLALTRKLCEAMQGELTVESTVGLGSLFSVGLP 524

Query: 790 S 790
            
Sbjct: 525 L 525


>gi|154253913|ref|YP_001414737.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157863|gb|ABS65080.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 704

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 138/279 (49%), Gaps = 4/279 (1%)

Query: 517 TLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER-ALTEKNEALRKADEIKNSFVQH 575
           T+  +   +L+Y  +         T  +    + A    LT    A  +A   K+ F+  
Sbjct: 412 TMLHIRAFMLKYRRVEGERDTLHRTLRDANAVLEARADELTRALMAAEQASLAKSEFLAT 471

Query: 576 VSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVD 634
           +S+ELR+PL  IIGF++ +K    G L + K ++Y + I+ S T LL+LV+DILD++ V+
Sbjct: 472 MSHELRTPLNAIIGFSETMKLEVFGPLGHGKYAEYAKDINNSGTHLLDLVSDILDISRVE 531

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKI 694
           +G   LN   + +  +   V  + A +  +  +  ++ +D  L    AD +++ QI + +
Sbjct: 532 SGTDALNEEEVCIESVARAVLAATAAQAGKAEVVCRLDADAGLPPVFADERKIRQILTNL 591

Query: 695 LSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRR 752
           + NA+ F+  G TV +  ARD   +  +V + G  I  +       RF       R +  
Sbjct: 592 VGNAIKFNVPGGTVAVTLARDESGYRIAVADTGIGIVAEDIPKALARFGQLEDQFRRKYE 651

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           G+GLGL IV+     HGGH +I S+    TT+   +P +
Sbjct: 652 GLGLGLPIVQVLTEQHGGHFAIESTPGRGTTVTITLPRE 690


>gi|71909071|ref|YP_286658.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
 gi|71848692|gb|AAZ48188.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
          Length = 1055

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 11/228 (4%)

Query: 569 KNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDIL 628
           K+ F+ ++S+E+R+P+  I+G   L   SK   L  +Q  YV  I +++  LL ++NDIL
Sbjct: 326 KSIFLANMSHEIRTPMNAILGMAYLALKSK---LPPRQHDYVSKIHSAARSLLGILNDIL 382

Query: 629 DLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGK--LGSFVADRQR 686
           D + ++AG + L      +  +L      +  K+    I + +       +   + D  R
Sbjct: 383 DFSKIEAGKVALEAVLFDIETVLQNALFMVQQKVEGKQIELILDFKPSRSMRFLLGDPLR 442

Query: 687 LLQIFSKILSNAMDFSSKGST--VILKAARDNGD--FIFSVKNNGSSIPEDMCKSVFNRF 742
           L Q+   +LSNA+ F+ +G    V+ +AA D       F V++ G  +  +    +F  F
Sbjct: 443 LGQVLINLLSNAVKFTERGHVRLVVSEAACDGATSTISFRVEDTGIGMSPEQVGRLFQEF 502

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                   R   G GLGL+I +  +    G + + S+    +  +  I
Sbjct: 503 SQADGSTTRKYGGTGLGLAISKRLVAAMSGEIGVESTLGKGSVFHFSI 550


>gi|329956866|ref|ZP_08297434.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328523623|gb|EGF50715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1474

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 154/393 (39%), Gaps = 30/393 (7%)

Query: 404  VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHL-SEGVA-VFGPDGRIKLSNP 461
            +  +P   +I    NLT  ++L+      V  Q   +D++  + +   +   G     N 
Sbjct: 804  IQGHPASHSI---NNLTE-LELKASQRN-VTFQFAALDYVNPDNILYAYRLQGLEDEWNE 858

Query: 462  AFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELL 521
            A  +        L  G +   I +T S      +   L   ++ +F           E  
Sbjct: 859  A-DNNRSASYINLPAGKYRLQIKSTNSDGVWTDNIRTLSIHVLPTF----------WETY 907

Query: 522  SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELR 581
               +L   +  L  A  +     +         L  + +  ++   IK  F   +S+ELR
Sbjct: 908  WAWLLYCLLFILFTATIVYVLFYIY-------RLRHRVDMEQQLANIKLRFFTDISHELR 960

Query: 582  SPLTNIIGF-TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKL 640
            +PLT I     ++L+      L+    +++  +  ++  +L L+N ILD   +    MKL
Sbjct: 961  TPLTLIGSPVAEVLENE---PLSPTAREHLTLVRRNTERMLRLMNQILDFRKIQNQKMKL 1017

Query: 641  NYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMD 700
                  L  LL +V  S      E NI  ++ S  +      DR +  +IF  +LSNA  
Sbjct: 1018 LVEETDLIPLLQKVMDSFRLIAKEKNIDYQMKSPIESVYGWVDRDKFEKIFFNLLSNAFK 1077

Query: 701  FSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS-NAHRGQRRGVGLGLS 759
            ++ +G  + +K    N      V + G  I  +  +++F RF +       +   G+GLS
Sbjct: 1078 YTPEGKAITIKVLPHNETIDIEVADEGIGIAAEKQRTLFQRFETLVKQNILQPSSGIGLS 1137

Query: 760  IVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            +V+  + +H G + + S     +     +P ++
Sbjct: 1138 LVKEMVEIHHGTIQVDSQPGIGSRFTVTLPLRK 1170


>gi|146283877|ref|YP_001174030.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri
            A1501]
 gi|145572082|gb|ABP81188.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri
            A1501]
          Length = 1426

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 185/511 (36%), Gaps = 32/511 (6%)

Query: 297  KEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSN 352
            +  +  D+ +   + L NL     +A    D+   +++      +++ +       N + 
Sbjct: 788  ELKSKVDETSKINDDLQNLISSTDIATVFVDRKMRIKWFTPRARDIFNV-----IGNDAG 842

Query: 353  DELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDT-WHLPNGQTLHVIVTSNPRGG 411
              L +     +      +     E +  V +     +   W+L   + L      +   G
Sbjct: 843  RSLFDITHRLDYPLLAKDAAEAFEELHLVEREVRDREGQHWYLA--RFLPYRTLDDRIEG 900

Query: 412  TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEG--VAVFGPDGRIKLSNPAFRSLWKT 469
             +  F +++ +   E +     +   + +   ++G  +     DG I   N     +   
Sbjct: 901  AVLTFIDISDRRRAEEELRA-GEAHLKLLAQSTKGYAIITLDCDGLITTWNCGAELILGY 959

Query: 470  EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KSLQGTLELLSDSVLE 527
             E  +  G  +  I     R     +     A       DER      G+   LS     
Sbjct: 960  RETEVL-GQTVDIIYTEQDRQAGVPEAERQRALQHGQATDERWHARRDGSRCFLSGL--- 1015

Query: 528  YSIIPLPNAQTMLTFVNVTDSVRAER-----ALTEKNEALRKADEIKNSFVQHVSYELRS 582
              + PL +    +           E          + E+++ A+  K+ F   +S+EL+ 
Sbjct: 1016 --LNPLVDGTGKVIGFAKIARDLTEERQRSSEQQNELESVQAANLQKDQFFAVLSHELKH 1073

Query: 583  PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
            PL  I   TDL+  S+    N    +  + I  +      +++D++D++ +  G +KL++
Sbjct: 1074 PLNLIQLNTDLVARSQAVKNNPSLHKATQSIQNAVRSQSRIIDDLMDVSRIRTGKLKLHF 1133

Query: 643  STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
            +T+   D+L  ++   A      NI  +           AD  RL QI   +L+NA  FS
Sbjct: 1134 ATLRYQDVLRGIEAVFAPLAQSENISFESFKPDAPIYIQADPTRLDQIIWNLLNNAWKFS 1193

Query: 703  SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN---AHRGQRRGVGLGLS 759
              G  + ++  R+       V + G  I  D    VF+ F        +  + G+G+GL+
Sbjct: 1194 KGGERICMQLEREGDQARLDVIDTGEGISADFLPKVFDMFGQAEMQHAQRAKHGLGIGLA 1253

Query: 760  IVESFINLHGGHVSISSSD-EGVTTINCRIP 789
            +V+  +  H G +   S         +  +P
Sbjct: 1254 LVKQLVEAHNGRIEAYSEGIGRGARFSVWLP 1284


>gi|91773722|ref|YP_566414.1| PAS/PAC sensor hybrid histidine kinase [Methanococcoides burtonii
           DSM 6242]
 gi|91712737|gb|ABE52664.1| Response regulator domain-containing multisensor signal
           transduction histidine kinase [Methanococcoides burtonii
           DSM 6242]
          Length = 510

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 165/382 (43%), Gaps = 22/382 (5%)

Query: 423 VDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRN 482
             L+           + +D     + +   D  I  +N    +++  E+  +   + I  
Sbjct: 125 KHLQENIIQEKNQAYQYLDAAGSIIVIINKDTEIVFANKKSCNIFGWEKKDIRGKSWIDL 184

Query: 483 IAATCSRYYNESDGWDLFAAIITSFDDER----KSLQGTLELLSDSVLEYSIIPLPNAQT 538
           I         +     L          ER    K+  GT    S+ ++ +  + L +++ 
Sbjct: 185 IQENGRESRKQDLHNILSGKAEPPEYYERLIVTKNADGT---FSERIILWHDVILKDSEG 241

Query: 539 MLTFV-----NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +T +     N T+    E  L++ NE L  + ++K+ F+ ++++ELR+PL +I GF++L
Sbjct: 242 NITGIIRSGENTTERKNIEEELSKANEKLHSSHKMKDEFLANINHELRTPLISIKGFSEL 301

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L   +LG+LN +Q + +E +  +S  L +L+  +  ++ +    +K  +S + + ++L  
Sbjct: 302 LYNERLGNLNERQKRTMESVVRNSERLQHLIESLFYVSEMQNETIKYTFSFLNIKNILET 361

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +K+ +  ++    + +       L     + + +  +   +L NA+ ++  G ++ L A+
Sbjct: 362 LKKDMFPQIDHKGLEVNADIPDSLPPIHGNTKYIESVLMHLLDNAIKYTPSGKSISLIAS 421

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVF-NRFVSNAH-----RGQRRGVGLGLSIVESFINL 767
            +NGD    +K+ G  IP DM   +F                Q      GL I +  I  
Sbjct: 422 EENGDIHIIIKDTGKGIPTDMLTHIFSEVPEEGDECDLCYSNQDY----GLIICKKIIEA 477

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G + I+S     T I+ ++P
Sbjct: 478 HRGSIWINSEVNHGTEIHVKLP 499



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 14/151 (9%)

Query: 298 EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLE 357
           +  +  +    Y+ L      I I +++  + F N+    ++  +   +      D + E
Sbjct: 128 QENIIQEKNQAYQYLDAAGSIIVIINKDTEIVFANKKSCNIFGWEKKDIRGKSWIDLIQE 187

Query: 358 FLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQ------TLHVIVTSNPRG- 410
             R + K  +  N  + K      Y+     K+     +G         H ++  +  G 
Sbjct: 188 NGRESRK-QDLHNILSGKAEPPEYYERLIVTKN----ADGTFSERIILWHDVILKDSEGN 242

Query: 411 --GTIWMFENLTVQVDLETKYNTLVKVQGET 439
             G I   EN T + ++E + +   +    +
Sbjct: 243 ITGIIRSGENTTERKNIEEELSKANEKLHSS 273


>gi|281355428|ref|ZP_06241922.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
 gi|281318308|gb|EFB02328.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
          Length = 596

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 151/376 (40%), Gaps = 34/376 (9%)

Query: 424 DLETKYNTLVKVQGE---TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
           +L+ + N + + + E       L+EGV V      +   N A R ++K ++     G  +
Sbjct: 239 ELKKRINEISREKSERDAIFAALAEGVIVLDRQDNVIDINTAARQIFKLKDEP--CGLPV 296

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSVLEYSIIPLPNAQ 537
             I                 +A I     E   ++    +     D  L      L  ++
Sbjct: 297 SGIIRNLE-----------ISAFIEKLKKEGAPVEAEFPVQLPSGDKQLRVRGTRLKWSE 345

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
              + +           +      LRK +  +  FV +VS+E+++PLT I G  + L+  
Sbjct: 346 DKASGI---------LLVIYDMTQLRKLENFRRDFVANVSHEIKTPLTVIRGAVETLRDG 396

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMK--LNYSTIVLNDLLNEVK 655
            +    S +  +++ I   S  L  LV DIL L+ ++   +    N   + ++  ++   
Sbjct: 397 AIHEPESAER-FMQIIEMHSERLNALVQDILSLSQLECRAVGDGYNMVPVNVSTPISTAV 455

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           +    +     +++ V +       + D Q + Q    ++ NA+  S + S V + A  +
Sbjct: 456 ELAQARADAAGLKLVVETSAD-PEVLIDVQLVEQAILNLIDNAIKHSGEKSEVRITAREE 514

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
           +G+ +  V ++G  IP +    VF RF         +  G GLGL+IV+  + LH G   
Sbjct: 515 SGEAVIEVADHGCGIPAEHLPRVFERFYRVDKARSRKAGGTGLGLAIVKHVMQLHHGSAE 574

Query: 774 ISSSDEGVTTINCRIP 789
           + S+    +T   R+P
Sbjct: 575 VHSTVGQGSTFTLRLP 590


>gi|167588844|ref|ZP_02381232.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 496

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 130/345 (37%), Gaps = 19/345 (5%)

Query: 451 GPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDE 510
            PDG +   N                G  +    A     +   D   L     T     
Sbjct: 5   DPDGWVDYMN---------CRGLGYGGVTLEQAQAQGWESFLHPDDLQLAIDTWTRAIQS 55

Query: 511 RKSLQGTLELLSD-----SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA 565
               +    L               +P  +    +     T++      L +   A  +A
Sbjct: 56  GVEFEIEYRLRRACDGAYRWFLCRALPFRDRDGKIVKWFGTETDI--EDLKQARAAAERA 113

Query: 566 DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +  K+ F+  +S+ELRSPL  I+GF  L+ +       S+Q+  ++ I  +   LL L+N
Sbjct: 114 NRAKSDFLSSMSHELRSPLNAILGFAQLMASDLPPPTPSQQAS-IDQILRAGWHLLELIN 172

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LDLA +++G + ++   + L D L E +  I  +  +  IR+            ADR 
Sbjct: 173 DVLDLAKIESGQVAISPEPVSLRDALRECESMIEPQARQRGIRVSFPEVESHCHVRADRT 232

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           R  QI   +LSNA+ ++     V +    R  G    SV++ G  + ++    +F  F  
Sbjct: 233 RFRQILLNLLSNAIKYNRPSGAVDVDCDLRAPGRIRVSVRDTGLGLSQEQLGQLFQPFNR 292

Query: 745 -NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                G   G G+GL + +    L GG +   S+    +     +
Sbjct: 293 LGQDAGAEEGTGIGLVVAKRLTELMGGAIGADSTVGKGSVFWIEL 337


>gi|153950420|ref|YP_001402786.1| sensor histidine kinase/response regulator EsrA [Yersinia
           pseudotuberculosis IP 31758]
 gi|152961915|gb|ABS49376.1| putative sensor histidine kinase/response regulator EsrA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 939

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           +A+  K+  +  +S+E+R+PL   +G  +LL+ +    L++ Q +  E     S  LL +
Sbjct: 393 QANRRKSDHLTTISHEIRTPLNGALGAVELLQNT---PLDAGQMRLAETAHQCSLSLLAI 449

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVA 682
           +N++LD + +++G M L+     L  LL++   +I ++    ++ +       +      
Sbjct: 450 INNLLDFSRIESGQMTLSLKKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELEL 509

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           D  RL QI   +L NA+ F+ +G  + L+  R N    F+V++ G  I     +++F  F
Sbjct: 510 DTLRLRQILVNLLGNAVKFTPQG-RIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPF 568

Query: 743 VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           +        +G GLGL+I ++   + GGH+++ S     +  +  +P
Sbjct: 569 MQ--TSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLP 613


>gi|302381238|ref|YP_003817061.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191866|gb|ADK99437.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 585

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 7/241 (2%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
           AL         A+  K+ F+  +S+E+R+PL  ++G    +   +   L+ +Q Q ++ +
Sbjct: 186 ALERAQTDAEDANRAKSDFLATMSHEIRTPLNGVLGMAQAMTADR---LSVRQRQRLDIV 242

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + S   LL +++D+LDLA ++A  ++L  +   L  L+ + +++         +      
Sbjct: 243 TQSGHALLTILSDVLDLAKIEARKVELETADFDLETLVEQSRETFRAVADAKGLSFDARV 302

Query: 674 DG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
           +    G++  D  RL QI S ++SNA+ F+  G T+ + A   +G    +V++ G+ +  
Sbjct: 303 EPAAAGTWRGDTTRLRQILSNLISNAIKFTDAG-TISVVADAVDGRLRVTVEDTGAGVTA 361

Query: 733 DMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +    +F +FV       R   G GLGLSI     +L GG +     +          P 
Sbjct: 362 EQLPLLFGKFVQADASTTRKHGGTGLGLSICMELAHLMGGSIEAERIEPHGLRFTFEAPL 421

Query: 791 K 791
           +
Sbjct: 422 E 422


>gi|319955615|ref|YP_004166882.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga algicola DSM 14237]
 gi|319424275|gb|ADV51384.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga algicola DSM 14237]
          Length = 498

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 122/279 (43%), Gaps = 3/279 (1%)

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           +  T+    +  L+  I   P+A  +    N          + +  + ++  D ++   +
Sbjct: 221 ITKTVRSFQEGDLDARI-ENPDASDIAILANSF--NEMADTIVDNMDKMKSVDLLRRELI 277

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS++LR+PL  + G+ + L+        + + +Y++    +   L  L+N + + + +
Sbjct: 278 ANVSHDLRTPLAILKGYVETLQMKNETLSENDKKEYLQITHDNIDKLSKLINQLFEYSKL 337

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +A  +        + +L +++         + NI +K+ +        AD   + +    
Sbjct: 338 EAEQVSPIKEPFSITELSHDLIAKFKVLADKKNISLKLNNPEDNCLVFADVSLVERALQN 397

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           ++ NA+ ++    TV L   +   +   ++ + G+ I       +F+R+       +++G
Sbjct: 398 LIENALKYTEDNGTVTLSLLKKGKNIEINISDTGTGIAVSELPYIFDRYKQVDKSTKKQG 457

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGL+IV+  ++LH   +++ S  +  ++    +P+ +
Sbjct: 458 YGLGLAIVKKIMDLHDTTITVLSKPKEGSSFIFNLPAYQ 496


>gi|309776880|ref|ZP_07671850.1| sensor histidine kinase/response regulator [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915291|gb|EFP61061.1| sensor histidine kinase/response regulator [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 658

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 117/242 (48%), Gaps = 8/242 (3%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            +  K +    +++ K++F+ ++S+E+R+PL  IIG   L++ +       K  +Y+E  
Sbjct: 268 QVINKAKIASASEKAKSAFLANMSHEIRTPLNGIIGLQYLMQQNIEHP--DKLKEYLEKA 325

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
           + SS  L +++ D+L+++ +++G ++L      L D++ E+   I  +  E+  +  + +
Sbjct: 326 NVSSQYLKSVITDVLEMSKIESGQLELYQKPFNLLDMIQEIHMIIGVQAEEHKQQFTLDT 385

Query: 674 -DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR--DNGDFI---FSVKNNG 727
                 + +AD  R+ Q+   +L NA+ F+ +   + L+  +  +    +   F + + G
Sbjct: 386 TQIHSTALLADEVRIKQVLINLLGNALKFTPEKGQISLQVEQQPEKDGIVPTKFVITDTG 445

Query: 728 SSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
             + ++  + ++N F        + G GLG ++ +  +    G + + S     T    +
Sbjct: 446 CGMSDEFLQRIWNPFEQEHRMASQNGTGLGTTLSKILVEKMDGSIQVESELGKGTCFTIQ 505

Query: 788 IP 789
           +P
Sbjct: 506 LP 507


>gi|225390145|ref|ZP_03759869.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme
           DSM 15981]
 gi|225043798|gb|EEG54044.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme
           DSM 15981]
          Length = 852

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 111/244 (45%), Gaps = 12/244 (4%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
             L +  +A  +A++ K+ F+ ++S+++R+P+  I+G T +   +       +    +  
Sbjct: 329 HELEKARQAALEANKAKSEFLANMSHDIRTPMNAIVGMTAI--ATAHIDDRKQVQNCLRK 386

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I+ SS  LL L+ND+LDL+ +++G + L    I L +++  +   +  ++        + 
Sbjct: 387 ITLSSKHLLGLINDVLDLSKIESGKLTLTIEQISLKEVIEGIVSIMQPQVKAKKQNFDIH 446

Query: 673 SDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFS--VK 724
            +  L      D  RL QI   +LSNA  ++ +G ++ L  + +           S  VK
Sbjct: 447 VENILTENVWCDGVRLNQILLNLLSNATKYTPEGGSIQLSLSEEKSPKGENYVRISIKVK 506

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           +NG  +  D  K ++  +         +  G GLG++I +  ++   G + I S  +  T
Sbjct: 507 DNGIGMSPDFLKKIYESYSRADGTRVHKTEGAGLGMAITKYIVDAMEGTIDIQSEPDKGT 566

Query: 783 TINC 786
               
Sbjct: 567 EFFL 570


>gi|332527608|ref|ZP_08403655.1| sensor histidine kinase/response regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332112011|gb|EGJ11988.1| sensor histidine kinase/response regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 752

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 154/326 (47%), Gaps = 18/326 (5%)

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
           +R + +       E  G  L AA         ++       +    L  S+  L  A  +
Sbjct: 141 LRELESELVAMGPEIHGLSLRAAHHVGEQVAARNATVQKHNMVGIGLTVSLSALTLAFAL 200

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADE-------IKNSFVQHVSYELRSPLTNIIGFTD 592
           L    +    R   AL E  E LR+A          K++F+ ++S+E+R+P   ++G   
Sbjct: 201 LALRQMRQLDRRRAALEELAEHLRQARRDAEAASEAKSAFLANMSHEIRTPFHGLLGMLS 260

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL+ +    LN +Q  Y+   + S+  LL ++NDILD++ +++G M L  + + L  LL 
Sbjct: 261 LLRET---GLNQQQVSYLRTATESADHLLAILNDILDMSQLESGRMVLMPAPVELRALLR 317

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILK 711
           +V+  +  + H  ++ + + +D  L    + D  R+ Q+   +LSNA+ FS +G+ V L 
Sbjct: 318 DVEALMRPQAHAKSLALHIAADPALPERVLCDATRVKQVLFNLLSNAIKFSDQGAVV-LD 376

Query: 712 AARDNGD----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFI 765
              + GD     +F+V + G  I E    ++F+RFV       RR  G GLGL I  +  
Sbjct: 377 VQAEGGDGAAELVFTVSDQGVGIDEATLATLFHRFVQADSSRSRRHGGAGLGLEISRNLA 436

Query: 766 NLHGGHVSISSSDEGVTTINCRIPSK 791
            L GG ++++S     ++   R+P K
Sbjct: 437 RLMGGDITVTSQPGQGSSFRLRMPLK 462


>gi|304317627|ref|YP_003852772.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779129|gb|ADL69688.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 464

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 132/296 (44%), Gaps = 16/296 (5%)

Query: 499 LFAAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTE 557
           + + I+ +F  +  K L    +++S+   +Y +                +  +   A  +
Sbjct: 180 ILSLIVAAFITKPLKRLTDATKVISEGKFDYKV----------EIRGNDEIGKLADAFND 229

Query: 558 KNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASS 617
            +  L K D+ +  FV   S+EL++PL  I    + L +S    ++    ++++ I++  
Sbjct: 230 MSTKLMKIDDERKRFVSDASHELKTPLAAIKALVEPLISSDNVDISV-YKEFLKDINSEV 288

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             +  LVN++L LA +D  I  +   T  + ++   V +++     +  + +   SD  +
Sbjct: 289 DRMTRLVNELLVLARID-KIHSIENKTENIGEIAYNVVENLEAIARQKGVSLIFESDKNI 347

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKS 737
            + V D  R  ++   ++ N + ++  G TV L    D+ +   ++ + G  I ++    
Sbjct: 348 FADV-DADRFYRMIYNVVENGIKYTPSGGTVKLNLDSDDKNVYITISDTGIGISQETLPK 406

Query: 738 VFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           VF RF         +  G GLGL+IV+  ++LH GH+ + S+    T     IP K
Sbjct: 407 VFERFSRGDTARSQKTGGFGLGLAIVKEIVDLHKGHIDVKSTVGEGTEFYITIPVK 462


>gi|228937888|ref|ZP_04100516.1| hypothetical protein bthur0008_5640 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970769|ref|ZP_04131409.1| hypothetical protein bthur0003_5560 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977344|ref|ZP_04137739.1| hypothetical protein bthur0002_5590 [Bacillus thuringiensis Bt407]
 gi|228782321|gb|EEM30504.1| hypothetical protein bthur0002_5590 [Bacillus thuringiensis Bt407]
 gi|228788894|gb|EEM36833.1| hypothetical protein bthur0003_5560 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821794|gb|EEM67794.1| hypothetical protein bthur0008_5640 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938367|gb|AEA14263.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 463

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+   IL+NA   S + S + +    ++    
Sbjct: 325 MYKERYIKVSFSCSPTLL-VNLDEQRFEQVIVNILNNAYRHSKEHSHINISITEEHKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  IP +    +F+RF        R   G GLGLSIV+  + LHGG ++++S  
Sbjct: 384 ITIEDEGEGIPPEDLPHIFDRFYRVDKARTRATGGTGLGLSIVKEIVELHGGTITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|83310531|ref|YP_420795.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945372|dbj|BAE50236.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 631

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 10/280 (3%)

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNV-TDSVRAERALTEKNEALRKADEIKNSFVQHV 576
           LE L     +Y +  L +A  +   V    +    E  L E  ++  +A   K+ F+  +
Sbjct: 98  LEALKRGAQDYLVKGLGDAFILSRVVRYAIERKMGEEVLREARDSAEQAARAKSVFLAMM 157

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAG 636
            +E+R+PL  ++G   LL  +    L+ +Q  + E + +S  +LL LVNDILD + +DA 
Sbjct: 158 GHEIRTPLNGVLGMARLLLET---DLDPRQKSFAETLVSSGELLLGLVNDILDFSRLDAE 214

Query: 637 IMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKIL 695
            M L      + D + EV+  +A++  E ++ +       +   V  DR RL QI   ++
Sbjct: 215 GMTLAVEPFDVLDTVEEVRLVLASRAAEKDLALSCRFGAGVRRVVSGDRLRLRQILFNLV 274

Query: 696 SNAMDFSSKGST-VILK--AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR 752
            NA+ F+ +G   + ++  A        FSVK++G  I  ++   +F  F        RR
Sbjct: 275 GNAIKFTDRGGVEIGVEPLAVEQGQILRFSVKDSGIGIAPEIGAQLFTEFWQGDSGAARR 334

Query: 753 --GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGL+I +   +L GG +   S  +  +T    +P 
Sbjct: 335 FDGAGLGLAICKRLTDLMGGVIGYDSLPDRGSTFRVDLPL 374


>gi|315150776|gb|EFT94792.1| PAS domain S-box [Enterococcus faecalis TX0012]
          Length = 591

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 154/379 (40%), Gaps = 25/379 (6%)

Query: 415 MFENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
               L+ QV      Y +  +   E +D L  GV +    GR++L NP  + +       
Sbjct: 230 TINLLSQQVSQTYKAYTSADEQFHELLDELMIGVFIIDTQGRLRLLNPKMQEML------ 283

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              G   +N+ +       ++D   L   ++     E+ SL   + +           PL
Sbjct: 284 ---GLSAKNMQSNYLEVIQDADLIHLIHQVVA----EKNSLHQEITVTQGP------TPL 330

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
               ++    + + +      +      +R+ ++++  FV ++S+EL++P+T+++GFT+ 
Sbjct: 331 RLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLEKMQKDFVSNLSHELKTPVTSLLGFTET 390

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L             Q++  +   +  L  L+ +IL+L+   +  +      I L   + E
Sbjct: 391 LIDGAKED-PEVLDQFLHIMQKDAQRLQQLIQEILELSR-GSATIPYAEQGITLEKFITE 448

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
           +  S   ++    ++  V+       F    +    +   ++ NA+ +S +   + +  A
Sbjct: 449 ILGSYQQQLAAKQLK-TVVHGLPESQFFTKYELFYPVVKNLIENAIQYSQENGQITISYA 507

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGH 771
            +N     SV++ G  I +   + +F RF            G GLGL+IV+++  L GG 
Sbjct: 508 IENQQLRLSVQDTGIGISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGK 567

Query: 772 VSISSSDEGVTTINCRIPS 790
           ++I S     TT    +P 
Sbjct: 568 IAIDSHLGLGTTFTITLPL 586



 Score = 37.6 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 306 THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKL 365
              +E+L  L + + I D    L+  N    E+  +    + +N    E+++     + +
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSAKNMQSN--YLEVIQDADLIHLI 307

Query: 366 PEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDL 425
            + +  K       +V +     +    L      ++   S      + +  +LT     
Sbjct: 308 HQVVAEKNSLHQEITVTQGPTPLRLDLSLR-----YLDDQSANDYQVLGIAYDLT----- 357

Query: 426 ETKYNTLVKVQGETIDHLS 444
             +   L K+Q + + +LS
Sbjct: 358 --RVRQLEKMQKDFVSNLS 374


>gi|298246974|ref|ZP_06970779.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549633|gb|EFH83499.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 725

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/565 (15%), Positives = 206/565 (36%), Gaps = 51/565 (9%)

Query: 245 KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGE------AGIAIDVSKE 298
           +++++  +  +S  E    ET+     G +   +     +   +        +  D+++ 
Sbjct: 191 QQQLRAAITRASRGETVRFETLVHPREGMDLHLEATITPHEEVDHHVEYLVYVGTDITER 250

Query: 299 ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEF 358
                    TY ++  L   + I   +  + +HN+  ++   + L  +  +     +   
Sbjct: 251 KRAEGA---TYALMDALPHRVWIARSDGSVTYHNQRLIDYLVMPLDQIQGDGWMVGV--- 304

Query: 359 LRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-------LHVIVTSNPRGG 411
                      +    +E   +  ++   ++    L +G +          +   N +G 
Sbjct: 305 --------HPDDRPQVQEAWQAAIQTRGPYEVEHRLRDGISGAYRWFLARGVPQRNAQGT 356

Query: 412 TIWMF---ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWK 468
            +  F    ++  Q  +E   +   +     ++    G+ V   + +I  +N  F  +  
Sbjct: 357 ILHWFGTCTDIEDQKRIEEALHQSQERASALMNSNIIGINVIEGE-QIVDANDTFLRMTG 415

Query: 469 TEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY 528
                L  G           R+    +              ++       E +     + 
Sbjct: 416 YTREDLRAG-------RINWRHMTPPEYLARTQQAHQELATQQSMTPYEKEYVCQ---DG 465

Query: 529 SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNII 588
           S +P+     +     +             N A ++ ++ K+  +   S+EL +PLT + 
Sbjct: 466 SRLPVLVGGGVFQHHPLQAIT-----FVLDNSARKELEQRKDDLINMASHELGTPLTAVK 520

Query: 589 GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLN 648
             T L++       + + +  +  +     +L  L+ ++LD++ + AG ++     + L 
Sbjct: 521 MQTQLVRKRLEKQSHHEAATALSRVEGPIKLLERLIGELLDVSRIQAGRLEYVRERVDLG 580

Query: 649 DLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV 708
            LL +V  ++      + I   V+ +    S + DR RL Q F+ +LSNA+ +S    TV
Sbjct: 581 SLLRDVTDTMHHFHPSHTI---VVRETVQTSLIGDRDRLGQAFTNLLSNAITYSPDAETV 637

Query: 709 ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFIN 766
            +  +         V+++G  I ++    +F RF       QR   G+G+GL IV   + 
Sbjct: 638 EIDLSASEDAVTVRVRDHGLGILQEQRDKIFERFYRAPDLSQRAIPGLGMGLYIVAEIVK 697

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            H G++++ S     +T    +P +
Sbjct: 698 GHEGNITVDSEIGKGSTFTVTLPKR 722



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 109/355 (30%), Gaps = 43/355 (12%)

Query: 103 IDIPQTDTDLLSFENWLKFHHYIKLSKATEKL-RKEGQSFDLVAETQNDCAIKIEGRVSG 161
           I  P   T   SF          +L  A  +  R E   F+ +   +    + +E     
Sbjct: 174 IGQPFAQTPWWSFY----PASQQQLRAAITRASRGETVRFETLVHPREGMDLHLE----- 224

Query: 162 SCAFLRILSLDGIYSE-LAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
             A +        + E L        +          L D+L   VW     G + + N 
Sbjct: 225 --ATITPHEEVDHHVEYLVYVGTDITERKRAEGATYALMDALPHRVWIARSDGSVTYHNQ 282

Query: 221 SYKK-----NTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK 275
                      + +G  +   +    +   +E  +  I +    +     +     G  +
Sbjct: 283 RLIDYLVMPLDQIQGDGWMVGVHPDDRPQVQEAWQAAIQTRGPYEVEH-RLRDGISGAYR 341

Query: 276 SYKIVRVLNSFGEA------GIAIDVSKEITVNDQLTHTYE----ILHNLTVAIAIFDQN 325
            +    V     +       G   D+  +  + + L  + E    ++++  + I +  + 
Sbjct: 342 WFLARGVPQRNAQGTILHWFGTCTDIEDQKRIEEALHQSQERASALMNSNIIGINVI-EG 400

Query: 326 RYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSS 385
             +   N +F+ +       L     N      +      PE L          +  +S 
Sbjct: 401 EQIVDANDTFLRMTGYTREDLRAGRIN---WRHMTP----PEYLARTQQAHQELATQQSM 453

Query: 386 ETHKDTWHLPNGQTLHVIV-----TSNPRGGTIWMFENLTVQVDLETKYNTLVKV 435
             ++  +   +G  L V+V       +P     ++ +N + + +LE + + L+ +
Sbjct: 454 TPYEKEYVCQDGSRLPVLVGGGVFQHHPLQAITFVLDN-SARKELEQRKDDLINM 507


>gi|294010920|ref|YP_003544380.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292674250|dbj|BAI95768.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 1048

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 118/254 (46%), Gaps = 7/254 (2%)

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           + QT +    +    R +  L    EA   A+  K+ F+  +S+E+R+PL  I G+  LL
Sbjct: 645 DRQTSMLVDEIEAHARTDAELQRAKEAADAANLAKSRFIVGISHEIRTPLNTISGYAQLL 704

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
                   ++     V  I  S+T L +L++ ++D++ ++ G +++  + + L+DLL+++
Sbjct: 705 DKDPAHLADA-----VRVIRRSATHLTDLIDGLVDVSRIENGSVRIQRAPVNLHDLLHQL 759

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                 +     I+        L     +D +RL QI   ++SNA+ ++ +GS   L   
Sbjct: 760 GDMFRLQAAARGIQFSHSRAPHLPQWVYSDEKRLRQILINLISNAIKYTPQGSA-SLAVH 818

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
             N    F +K++G  I  D  K +F  F        + GVGLGL+I     ++ GG V+
Sbjct: 819 WRNPVAEFEIKDSGVGIAADDLKRIFEPFERINAVPGQPGVGLGLTITRLLADIMGGQVT 878

Query: 774 ISSSDEGVTTINCR 787
           + S     +    +
Sbjct: 879 VESRPGAGSVFRVK 892


>gi|254785978|ref|YP_003073407.1| fog: ggdef domain containing protein [Teredinibacter turnerae
           T7901]
 gi|237684430|gb|ACR11694.1| putative fog: ggdef domain containing protein [Teredinibacter
           turnerae T7901]
          Length = 718

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 9/263 (3%)

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
            +   ++ F     S + E ALTE       A+  K +F+  +S+E R+PL +IIGF+  
Sbjct: 448 KDELGLIAFWFNQRSSQLEVALTE----AETANRAKTAFLAKMSHEFRTPLNSIIGFSRR 503

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+      ++    + +  I  +   LL LVNDI+D+  +++G +KL      +N+LL E
Sbjct: 504 LQDKLKHQVDEFHYEAIRRIHTNGHHLLALVNDIIDMTAIESGGVKLRAHEESVNELLQE 563

Query: 654 VKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
                      +++R+           V DR +++QI   +LSNA+  + +GS V L   
Sbjct: 564 AVAECQIYAERSDVRLVKKELAVDVLIVCDRNKVVQILVNLLSNALKATRRGS-VQLSVK 622

Query: 714 ---RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRGVGLGLSIVESFINLHG 769
               D     F V + G  I E   + +F +F     R G  RG GLGL +V  F+ +HG
Sbjct: 623 QLLEDREHIYFEVVDTGIGISEQDQQKLFKKFSQLESRIGSERGTGLGLFLVREFVKMHG 682

Query: 770 GHVSISSSDEGVTTINCRIPSKE 792
           G V ++S     TT   ++P K+
Sbjct: 683 GSVDLTSELGVGTTFTVKLPVKQ 705


>gi|228920112|ref|ZP_04083461.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839568|gb|EEM84860.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 463

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 133/291 (45%), Gaps = 5/291 (1%)

Query: 500 FAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
            A I+ +    RK +    + LS      + +   +    +T  +  +  R  +A  +  
Sbjct: 167 IAMILITIWVGRKIIIAITKPLSQMERVANHLATGDFSERITVSSEDEIGRLGKAFNKMA 226

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
            +L   D  +  F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  
Sbjct: 227 NSLETEDVKRKEFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEAGR 284

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           +  LV+D+LDLA ++     L    IV + L+ +V  +   K  E  I I    + ++  
Sbjct: 285 MQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVI- 343

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVF 739
            + D  R+ Q+   +L NA+ ++++   +++   +        +++ G  I  +  +++ 
Sbjct: 344 VMIDEDRMQQVLHNVLDNAIRYTNQKGNIVITLEQIYDYCELKIQDTGIGIDIEHLENLG 403

Query: 740 NRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            RF         Q  G GLGL+IV+  +++HGG   I S  +  TT++ ++
Sbjct: 404 ERFYRVDKARSRQHGGTGLGLAIVKQIVHIHGGQWQIESEKDKGTTVSIKL 454


>gi|157827614|ref|YP_001496678.1| histidine kinase sensor protein [Rickettsia bellii OSU 85-389]
 gi|157802918|gb|ABV79641.1| Histidine kinase sensor protein [Rickettsia bellii OSU 85-389]
          Length = 498

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 239 TNYARHIIEEQLVTNRNLKAEIIKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 298

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L++     
Sbjct: 299 K---DPEKSRNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLVSSSLIL 355

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +  +  +  + +   S  +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 356 VKPRADQAGVELVNKSPKEHIVIKADPKRLKQVFLNLLSNAVKFTNAGGSVTITMEKDEL 415

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 416 AKLVYIKVIDTGIGIEEKDIPKTLSTFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 475

Query: 774 ISSSDEGVTTINCRI 788
           + S     TTI    
Sbjct: 476 LQSKINEGTTIILTF 490


>gi|319902564|ref|YP_004162292.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
 gi|319417595|gb|ADV44706.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides helcogenes P 36-108]
          Length = 622

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 122/253 (48%), Gaps = 6/253 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
              T     D   +E AL E  E   ++  +K++F+ ++S+E+R+PL  I+GF+D+L  S
Sbjct: 372 YYHTKKLKDDLQESEGALLEAKERAEESSRLKSAFLANMSHEIRTPLNAIVGFSDVL--S 429

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
             GS   +Q  Y E I  +S +LL L+NDILD++ ++A  +K       +  +  ++  S
Sbjct: 430 AGGSSEEEQRSYFEIIKTNSDLLLRLINDILDVSRLEADRVKFKSEDCNVALVCRQIVAS 489

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS-TVILKAARDN 716
           +A +  +++ R              D QRL Q+   +LSNA  F+  G+ T+ L+  RD 
Sbjct: 490 VA-QARKSDNRFLFECGSDSVKIRTDVQRLQQVVINLLSNADKFTKNGTITLKLEINRDG 548

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              +FSV + G  IP D    VF RF       Q  G GLGLSI +      GG + I  
Sbjct: 549 NMAVFSVTDTGCGIPLDKQGLVFERFEKLNEYMQ--GTGLGLSICKLTTEKWGGKIWIDP 606

Query: 777 SDEGVTTINCRIP 789
           +           P
Sbjct: 607 TYTNGARFIFTHP 619


>gi|78063729|ref|YP_373637.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77971614|gb|ABB12993.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 1032

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 144/368 (39%), Gaps = 30/368 (8%)

Query: 437 GETIDHLSEGVAVFGP-DGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
              I+    G+ +    DG   L +PA        E     G+  R ++A     Y+   
Sbjct: 396 RSVIETAPIGLGLISRADGHFMLVSPALA------EMIARLGSDYRALSAQAVARYDAFI 449

Query: 496 GWDLFAA------IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSV 549
                        ++   D     L   +        E  ++       ++   +VT   
Sbjct: 450 AGGAAGGTLQTDFVLAEADAGAAPLHLEVSACGARYQEIDVL-------IVAVADVTARR 502

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           +  + L E   A   A+  K+SF+  +++E+R+PL  I+G  +LL  S   +L++ Q   
Sbjct: 503 QLVQQLEEAVRAADSANAAKSSFLAAITHEIRTPLNVILGNLELLDRS---ALDASQHGR 559

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           V+ + A+++ LL LV+DILD + ++AG M +      +  ++     + A       + +
Sbjct: 560 VQTLRAAASGLLGLVSDILDFSKIEAGAMTVEAIEFDVIGVIERTLGAFAPVAKAKGLSL 619

Query: 670 KVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARD---NGDFIFSVK 724
               D         D  RL Q+   +LSNA+ F++ G   V +  A     + +   +V+
Sbjct: 620 FCEIDASDAQRMRGDPTRLGQVLGNLLSNAIKFTASGHVLVRVSVASAGCGDAELSIAVE 679

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           + G  I       +F  F         +  G GLGL++ +      GG + ++S     +
Sbjct: 680 DTGIGIAGADRHKLFKAFSQVDASITRRYGGTGLGLALCDRLAAAMGGRIDVASVPGTGS 739

Query: 783 TINCRIPS 790
                +P 
Sbjct: 740 RFTLTVPL 747


>gi|158522821|ref|YP_001530691.1| multi-sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158511647|gb|ABW68614.1| multi-sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 498

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 157/382 (41%), Gaps = 29/382 (7%)

Query: 420 TVQVDLETKYNTLVKVQGE------TIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
           T Q+ LE +  TL  +  E       ++ L  GVAV   +G + L NP+F+ L       
Sbjct: 131 TEQLALE-RSRTLADLGTEKSRISAIVESLPTGVAVTDKNGTVVLMNPSFKLLVGLAPET 189

Query: 474 LSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL-QGTLELLSDSVLEYSIIP 532
                      A  + Y  +    D+        +     L    L +  +  L     P
Sbjct: 190 AP--------GADIATYIEDPVLCDMVRRTARGDNGGAADLFTHELSIGGEKYLIARGRP 241

Query: 533 LPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
           +           VT        L          D++K+ FV  VS+ELRSPL+ I     
Sbjct: 242 VQAETGECIGTVVTLGDITSIKLL---------DQLKSEFVAKVSHELRSPLSTIHEQLG 292

Query: 593 -LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLL 651
            +L+     + +++    +      +  L+ L+ D+LDL+ +++G +  N   I L +LL
Sbjct: 293 AVLRDMAEENDDNEDQYILSRAKEKTGGLIALIGDLLDLSRIESGGVTHNIQPIRLENLL 352

Query: 652 NEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
             +   + ++      R+ +    G      AD   L  IF  +++NA+ ++  G +V++
Sbjct: 353 ASIVDFMQSRAAAREQRLSLELGTGPFPELTADPLALESIFGNLVANALQYTGNGGSVVV 412

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLH 768
           +A  ++G F  SV + G  + E   + +F +F        R   G GLGL IV+  +   
Sbjct: 413 RADMEDGFFRVSVADTGFGVAEQHREKIFEKFFRVKDENTRFITGTGLGLPIVKGLVEQM 472

Query: 769 GGHVSISSSDEGVTTINCRIPS 790
           GG + ++S     +T   R+P+
Sbjct: 473 GGTIDLASQPGKGSTFTVRLPA 494



 Score = 38.4 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 275 KSYKIVRVLNSFGEAGIAIDVSKE-ITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
           ++   +R+++   +  +A++ S+    +  + +    I+ +L   +A+ D+N  +   N 
Sbjct: 120 RALDKIRLIHETEQ--LALERSRTLADLGTEKSRISAIVESLPTGVAVTDKNGTVVLMNP 177

Query: 334 SFVELWEI-----DLAFLATNPSNDELLEFLRSANK 364
           SF  L  +       A +AT   +  L + +R   +
Sbjct: 178 SFKLLVGLAPETAPGADIATYIEDPVLCDMVRRTAR 213


>gi|154253591|ref|YP_001414415.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157541|gb|ABS64758.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 468

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 117/256 (45%), Gaps = 10/256 (3%)

Query: 544 NVTDSVRAERAL------TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
              ++   ER+L      T    ++ + ++ K  F+ ++S+ELR+PL  I+GF++ ++  
Sbjct: 201 MREEAAERERSLAQALAKTRLYASMERENKAKTEFLANMSHELRTPLNAILGFSEAMQME 260

Query: 598 KLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             G L + +  +Y+  I  + T LL+LVNDILDL+ ++   M L    I  + + +    
Sbjct: 261 LFGPLGHPRYVEYMHDIHHAGTHLLSLVNDILDLSRIELEGMSLTPQRIDFSGVCHNCLA 320

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD- 715
            +  +     +++             D +RL Q+   +LSNA+ F+  G TV L      
Sbjct: 321 IVRGRAERGGVQLIFECAPPFPEVETDERRLKQVLINLLSNAVKFTPAGGTVSLDVRPAP 380

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
           +G  I  +++ G  + E   +     F            G GLGL++V   + L GG ++
Sbjct: 381 DGGGIIRIRDTGIGMSETEVEQALRPFWQADAGLDRSFEGAGLGLALVSELLQLMGGSIT 440

Query: 774 ISSSDEGVTTINCRIP 789
           I S     T +   +P
Sbjct: 441 IESERGAGTLVTVGLP 456


>gi|159903936|ref|YP_001551280.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889112|gb|ABX09326.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 686

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 151/399 (37%), Gaps = 58/399 (14%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
            +  +    Q   I  +++G  +   +GRI L N   R  ++ E   L     I  +   
Sbjct: 287 EELKSAQVKQQSLIATMADGAILLDQEGRIVLVNATARRFFRWEGRNLEGQELIDELPEI 346

Query: 487 CSRYY---------NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ 537
            +            N  + +DL   I    D+  ++L+  ++ + DS             
Sbjct: 347 IANDLQPTLVSIRNNVLENYDLRCNI----DEPSRTLRIVMQSVRDST----------GS 392

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
            +         +  E  L          +  ++ F+ +VS+ELR+PL NI  + + L   
Sbjct: 393 NLKGVAVTIQDLTREVEL----------NAAQSRFISNVSHELRTPLFNIKSYVETLHDL 442

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
                  ++ +++   ++ +  L  LVND+LDL+ ++    K+ +  + ++  + +  ++
Sbjct: 443 NDKLTEEEKIEFLGIANSETDRLTRLVNDVLDLSKLET-SPKVKFEKLNIDPGIEQTLRN 501

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
                 +  + +    +  L S + +   LLQ+   ++ NA+ FS +   ++++A     
Sbjct: 502 YKLNAEDKKVDLCHEIEENLPSILGNWDMLLQVLDNLVGNALKFSRRSGKLMIRAYTWPD 561

Query: 718 -----------------------DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-G 753
                                       + + G  I  +    +F RF    +      G
Sbjct: 562 ICITSFKNKSNDAPCCDVISPLPRVRVEISDTGCGISREDQLKIFERFYRVENSVHTEAG 621

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            GLGLSIV+  +  HG  + ++S  E  TT    +P  E
Sbjct: 622 TGLGLSIVKGILGKHGSQIRMASEPEIGTTFWFDLPLSE 660



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 46/146 (31%), Gaps = 15/146 (10%)

Query: 294 DVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           D +    +         ++  +     + DQ   +   N +    +  +   L      D
Sbjct: 282 DAANIEELKSAQVKQQSLIATMADGAILLDQEGRIVLVNATARRFFRWEGRNLEGQELID 341

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG--- 410
           EL E + +      Q    + + N+   Y       +       +TL +++ S       
Sbjct: 342 ELPEIIANDL----QPTLVSIRNNVLENYDLRCNIDEP-----SRTLRIVMQSVRDSTGS 392

Query: 411 ---GTIWMFENLTVQVDLETKYNTLV 433
              G     ++LT +V+L    +  +
Sbjct: 393 NLKGVAVTIQDLTREVELNAAQSRFI 418


>gi|134299696|ref|YP_001113192.1| histidine kinase [Desulfotomaculum reducens MI-1]
 gi|134052396|gb|ABO50367.1| histidine kinase [Desulfotomaculum reducens MI-1]
          Length = 324

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           E  L + NE LR+ +E +   V  +S+EL +P+T+I G+   +  + +        QY+ 
Sbjct: 74  ESHLNKVNENLRQLEESRRQLVSDISHELGTPMTSIQGYLKAMLDNVI----EPDRQYLN 129

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I   + ++  LV D+ +L+ ++A  +  N+  + + DL+  + +  A     + I   +
Sbjct: 130 LIYDKTLLVNQLVEDLFELSKLEANQVSFNFKEVTIQDLMANITRKFALDFKNSGINFMI 189

Query: 672 IS-----DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA----ARDNGDFIFS 722
                           D  R+ Q+   +++NA+ ++  G T+ ++     A  +G+ I  
Sbjct: 190 DPIENLTPDNHIIMNVDPARIDQVMVNLINNAVKYTPTGGTIRIQCQIQNAEKDGEVIIK 249

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVT 782
           V ++GS I E     VF+RF       +  G GLGL+I +  I  HGG++ + S     +
Sbjct: 250 VIDSGSGIDEKSLPFVFDRFFKGTQSQKVGGTGLGLAIAKQIIIKHGGYIGVDSMVNKGS 309

Query: 783 TINCRIP 789
           T    +P
Sbjct: 310 TFYFSLP 316


>gi|291518851|emb|CBK74072.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens
           16/4]
          Length = 779

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 125/271 (46%), Gaps = 15/271 (5%)

Query: 528 YSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
           Y II L    TM     + D    ER +        +A +   +F+  +S+E+R+P+  I
Sbjct: 366 YLIIGLLFLITMAYMRALKDIRNTEREMYA----AVQAQDASTAFMTRMSHEMRTPINAI 421

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
           +G   ++      S +     Y   ++++   LL++VN++LDLA V AG +++      L
Sbjct: 422 LGMNKMILRE---SKDDAILDYARDVNSAGNYLLSIVNEVLDLAKVTAGRIEIIPEEYDL 478

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
            D++ E    +  +   N +  +V     L S  + D++R++Q+ + +L+NA+ ++  G 
Sbjct: 479 MDMIRECYSLVRPRAKANRLSFEVDMSDVLPSKLMGDKERVIQVITNLLTNAVKYTPAG- 537

Query: 707 TVILKA--ARDNGDFIFSV--KNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSI 760
            V L        G  +  V   + G  + E+    +F+ F      +  +  G GLGL+I
Sbjct: 538 RVTLSVQGKISEGRLLLIVGVTDTGIGVAEENIPYLFDSFRRVGEFNNKKIEGTGLGLTI 597

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            +  + L GG +S+ S     TT    IP +
Sbjct: 598 TKQLVELMGGSISVESELGKGTTFTVMIPQE 628


>gi|229194968|ref|ZP_04321749.1| hypothetical protein bcere0001_5470 [Bacillus cereus m1293]
 gi|228588536|gb|EEK46573.1| hypothetical protein bcere0001_5470 [Bacillus cereus m1293]
          Length = 463

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 166/437 (37%), Gaps = 39/437 (8%)

Query: 375 KENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            E + ++ K   +H+D      + QT+  +        T  +  N     ++  K N + 
Sbjct: 37  NEEMTALLKRGNSHRDVLEKYFDKQTISHVALMESEAETTVVITN--ANKEVLAKSNEIN 94

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH------------IR 481
               + I+ +         DG I  ++    +   T    +  G H            I 
Sbjct: 95  TTIKKHIEKMQ---TRTDHDGAIIENHWKTSNYICTVSPIIVAGKHEGYVYMFLGTESIE 151

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERK------SLQGTLELLSDSVLEYSIIPLPN 535
            +    ++ +  +        +IT F   R        ++   E +S   L  S+     
Sbjct: 152 KLVNGLTKQFIIAGAITFLLTVITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSL----- 206

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+  
Sbjct: 207 -----TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADI-- 259

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            SK  +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + 
Sbjct: 260 ASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIC 319

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +     E  I +       L     D QR  Q+   IL+NA   S + S + +    +
Sbjct: 320 EKVNAMYKERYITVSFSCPPTLL-VNLDEQRFEQVVVNILNNAYRHSKEHSHINISVTEE 378

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
           +     ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++
Sbjct: 379 HKSISIAIEDEGEGIPLEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGNIT 438

Query: 774 ISSSDEGVTTINCRIPS 790
           ++S  +  +     +PS
Sbjct: 439 VTSEVDHGSCFIISLPS 455


>gi|196230564|ref|ZP_03129426.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196225494|gb|EDY20002.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 527

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 151/381 (39%), Gaps = 20/381 (5%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            +  LE  +    ++    +    + V +F  D R   +N A  ++W    +        
Sbjct: 12  AEEALEMSHRRT-RLYEAVLSSTPDLVYIFDLDHRFIYANKALLAMWGKTWD-------- 62

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL---LSDSVLEYSIIPLPNAQ 537
             I   C     E    ++    I      +++++G +           +Y  +P+  A 
Sbjct: 63  EAIGHNCLELGYEPWHAEMHDREIEQAVATKQAVRGEVPFTGTAGRRFYDYIFVPVIGAD 122

Query: 538 TML-----TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             +     T  ++T+   AE+ L     A   A   K+ F+  +S+ELR+PL  ++    
Sbjct: 123 GNVEAVAGTTRDITERKEAEQQLAAAKAAAEAASRAKDDFLAALSHELRTPLNPVLLMA- 181

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            ++  +   L +        I  +  +   L++D+LDL  +  G ++L    + +++LL 
Sbjct: 182 -VEAERNPDLPASVRADFAAIRRNIELEARLIDDLLDLTRITRGKLRLERQALNVHELLR 240

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
                +  ++  + +R+ +  D       AD  RL Q+F  +L NA+ FS  G  VI++ 
Sbjct: 241 ACVGFVQPEIEAHGLRLTLALDAAEHWVEADHVRLQQVFWNVLRNAVKFSLAGGDVIVRT 300

Query: 713 ARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
           A  +      + + G  I       +F+ F          G+GLGL+I  + +  HGG +
Sbjct: 301 ANRDNQLRVEISDTGIGIAAADLPKIFDAFQQGREGNAFGGLGLGLAITRALVEQHGGRI 360

Query: 773 SISSSDEG-VTTINCRIPSKE 792
              S+  G   T     P  +
Sbjct: 361 VAESAGRGLGATFRFEFPLAK 381


>gi|304321087|ref|YP_003854730.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299989|gb|ADM09588.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 662

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 8/373 (2%)

Query: 423 VDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIR 481
              E       +     ++ + + G+    P+G +   N     +   + + +  G H  
Sbjct: 268 RAREQAVRDSEERFRLVVEGVQDYGIFALTPEGEVASWNTGAERIKGWQADEIL-GKHFA 326

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDD-ERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
               + +R Y  +   +      T+ D+  R    G+    +  V               
Sbjct: 327 RFYPSETRGYLPTQMLERARDHGTAEDEGWRVRKDGSRFWANVIVTALRDEAGELRGFAK 386

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
              ++T+  ++E AL    EA   A + K+ F+   S+ELR+P++ IIGF  +L+     
Sbjct: 387 VTRDITERKQSEEALKAAREAAVLASQAKSEFLSRTSHELRTPMSAIIGFAQVLELDH-D 445

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  +       I  ++  LL+L+ND+LD+++++AG   L    + L D+L E     A 
Sbjct: 446 DLAPRHQTATTQILKAARHLLSLINDLLDVSSIEAGTQALKLEEVSLLDVLEEAYSLAAP 505

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
            +   N+  +   +    +   DR+R +Q+   +L+NA  ++ +G+ V L    D  D +
Sbjct: 506 IVKAANLSFQFDQESAQYTVQCDRRRTIQVVLNLLTNAAKYNREGAYVALTVQPDGNDVV 565

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSS- 777
            SV ++G+ IP++    +F  F       QRR  G GLGL++ +S +   GG +   ++ 
Sbjct: 566 VSVTDDGAGIPDERIPRLFTPFDRLGQEKQRRTDGSGLGLALSKSLVETMGGRIGFRNAT 625

Query: 778 -DEGVTTINCRIP 789
             +   +    +P
Sbjct: 626 PPDRGASFWFTLP 638


>gi|309789804|ref|ZP_07684383.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308228108|gb|EFO81757.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 381

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 7/247 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  +  R++ +  +AL + ++ + + +  V++ELR+PL  I G+ + L    +   +   
Sbjct: 130 EIAQLSRSVNQLADALDQTEQRRLALLADVTHELRTPLATIGGYMEGLLDGVVQPSHET- 188

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
                 I   S  L  L+ D+  L+ V+AG + +   ++ L  L+  +          N 
Sbjct: 189 ---FNLILHESNRLQRLIEDLELLSRVEAGQLPVVARSVNLVHLIEAICVQFEPIFSANQ 245

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           +R+ +    +L    AD  RL QI   +LSNA  ++  G  V+L+A          V ++
Sbjct: 246 VRMGIEVPLRLPPVWADPDRLDQILINLLSNAYRYTPAGGEVVLRAWATTDKMTVEVADS 305

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTT 783
           G  I  +    VF RF        R   G G+GL+IV   ++  GG +S+ S+     T 
Sbjct: 306 GVGIAAEHLPHVFERFYRVDKSRARQSGGSGIGLAIVRHLVDAQGGDISVWSAGKGQGTV 365

Query: 784 INCRIPS 790
               +P 
Sbjct: 366 FTFTLPL 372


>gi|326202142|ref|ZP_08192012.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987937|gb|EGD48763.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 462

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 107/249 (42%), Gaps = 8/249 (3%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N  +  +    + +  E + K + ++      V++ELR+PL  +    + +      + +
Sbjct: 219 NTREINQLTVTINDLAENMEKQEILRKRLTGDVAHELRTPLATLQSHLEAMMDGIWPADS 278

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            +    ++        +  +V D+  LA  ++    LN  T  + +L      +  ++  
Sbjct: 279 ER----LKSCHEEIVRISKMVGDLEKLARYESENFVLNMDTFDITELAKRQIHNFESEFL 334

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSV 723
              + +K+   G      AD+ ++ Q+   +LSNA+ ++ +G  V++    ++ +   SV
Sbjct: 335 SKGLELKLT--GADCRVYADKDKISQVLVNLLSNALKYTPEGGMVVINIQYNDVNTEISV 392

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            +NG  IP +    +F RF            G G+GL+I +S +  HGG +++ S+    
Sbjct: 393 TDNGPGIPGEDLPYIFERFYRADKSRNKLTGGSGIGLAICKSIVLAHGGSINVQSNIGKG 452

Query: 782 TTINCRIPS 790
           T     IP 
Sbjct: 453 TKFTFTIPK 461


>gi|153810969|ref|ZP_01963637.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174]
 gi|149832857|gb|EDM87940.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174]
          Length = 469

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 4/238 (1%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           + L    + L +  E +  F+ ++S++ RSPLT+I G+ + +    +      Q +Y++ 
Sbjct: 230 KNLNYMADKLNRNGEYQRQFISNISHDFRSPLTSIKGYVEAMIDGTIPV--EMQEKYLKI 287

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           IS  +  L  L   +L L  +D     L+     +N ++     S        NI +++I
Sbjct: 288 ISYEAERLEKLTRGLLTLNELDIQKRMLHIQPFDINSVIKATAASFEGSCTSRNILLELI 347

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
             GK     AD +++ Q+   +LSNA+ FS   ST+ L+    NG    SVK++G  IP+
Sbjct: 348 LSGKELMAQADMEQIQQVLYNLLSNAIKFSPDNSTITLETTEKNGKIFVSVKDHGIGIPK 407

Query: 733 DMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
              + ++ RF          ++G GLGL+IV+  ++ HG H+++ S++   T     +
Sbjct: 408 ASLQKIWERFYKIDRSRGKDQKGTGLGLAIVKEILHAHGQHINVISTEGVGTEFIFTL 465


>gi|48374236|gb|AAT41932.1| putative two component hybrid sensor kinase [Fremyella diplosiphon
           Fd33]
          Length = 582

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 126/239 (52%), Gaps = 4/239 (1%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L EK ++L+KA+E+K  F+ ++S+E R+PL +I+  + +L     G L ++Q + V +I
Sbjct: 202 ELDEKADSLQKANELKTRFLSNMSHEFRTPLNSILSLSRMLLARMDGDLTAEQEKQVTFI 261

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKM-HENNIRIKVI 672
             +++ L  LVND+LDLA V+AG +++  S+  ++DL   ++  +   +   +++ + + 
Sbjct: 262 QKAASGLSELVNDLLDLAKVEAGKIEVRPSSFEVSDLFATLRGMLRPLLVQGSSVALNIE 321

Query: 673 SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPE 732
               +G   +D  ++ QI    +SNA+ F+ +G  V + A +     IFSV + G  I  
Sbjct: 322 EPEGIGQMYSDEGKVAQILRNFVSNALKFTEQGE-VRVSAMQRGHAVIFSVSDTGIGIAI 380

Query: 733 DMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              + +F  FV        Q +G GLGL +      L GG +S+ S     +T    IP
Sbjct: 381 ADQERIFEDFVQIESSLQKQVKGTGLGLPLSRKLTELLGGSISVESKLGQGSTFTASIP 439



 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 20/106 (18%)

Query: 683 DRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP--EDMCKSVFN 740
           D+ RL    S+I  NA  ++  G TV    A +  + I  +++ G  IP   ++      
Sbjct: 35  DQARLATAVSEIARNAFQYAG-GGTVEFSVAGEPQELIIRIQDRGEGIPHLAEVLA---G 90

Query: 741 RFVSNAHRGQRRGVGLGLSI--VESFINLHGGHVSISSSDEGVTTI 784
           RF S+         G+GL I      ++       + S     TT+
Sbjct: 91  RFTSD--------TGMGLGIMGSRRLMDF----FEMESQPGQGTTV 124


>gi|90022618|ref|YP_528445.1| two-component hybrid sensor and regulator [Saccharophagus degradans
           2-40]
 gi|89952218|gb|ABD82233.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 1132

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 113/255 (44%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT      +    + +  L +  E    A+  K+ ++  +S+ELRSPL  ++G+  L++ 
Sbjct: 640 QTRKLVQEIEAHEKTDLKLQKAKEQAEAANNAKSRYLTGISHELRSPLNTVLGYAQLMEM 699

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +L+      +  I  S   L +L+  +LD++ ++AG +++  +TI    LL ++++
Sbjct: 700 D--SALSEANQNKIAVIKRSGEHLADLIEGLLDISKIEAGRLEIQRNTIQFKSLLGQLEK 757

Query: 657 SIATKMHENNIRIKVI-SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  +  +            + + D +R+ QI   +LSNA+ ++  G  V       
Sbjct: 758 MFLLQAQDKGLTFTCERLSPMPATVMGDEKRVRQILINLLSNAIKYTEHGE-VKFSINYR 816

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           N    F + + G  I ED  + +F  F  V         G GLGL+I     ++ GG +S
Sbjct: 817 NQVAEFKISDTGVGINEDEYERIFKPFERVRRPGSPAVPGTGLGLTITRLLTDIMGGDIS 876

Query: 774 ISSSDEGVTTINCRI 788
           +  +  G +     +
Sbjct: 877 VERNPNGGSIFTVWL 891


>gi|255535845|ref|YP_003096216.1| two-component hybrid sensor and regulator [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342041|gb|ACU08154.1| two-component hybrid sensor and regulator [Flavobacteriaceae
           bacterium 3519-10]
          Length = 371

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 130/278 (46%), Gaps = 7/278 (2%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
            G L+ +S  V + +I+ L        +         + AL E+ E  ++A+  K+ F+ 
Sbjct: 95  SGGLDYISKPV-DMNILLLKVKTFYRIYEQSRALNEMQNALREEIEFRKEAERKKDEFIS 153

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVD 634
             S+EL++P+T+I G+  LL+ S   +        +  +      L  LV D+LD++ ++
Sbjct: 154 IASHELKTPMTSIKGYIQLLERSIEKNDIETTKIRLGKVQNQIEKLNLLVADLLDISKIE 213

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSK 693
           +G +K N      +++L+ + + +     ++N  I ++  G++  S  AD  R+ Q+   
Sbjct: 214 SGKLKFNKKHFCYDEVLSHILEVM----QQSNPHITIMKIGQVEDSVYADEMRIEQVIIN 269

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR-R 752
            ++NA+ +S     + +     +G    +V++ G  +  +    +F++F       +R +
Sbjct: 270 FITNAIKYSPGSEEIHVLTEIQDGHIYCAVRDFGIGMSPEHQNKIFDKFYRIEETSERFQ 329

Query: 753 GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           G+G+GL I +  I  H G + + S+    +     +P 
Sbjct: 330 GLGIGLYICQEIIGRHEGTIGVKSTPGQGSEFYFTLPL 367


>gi|253578664|ref|ZP_04855935.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849607|gb|EES77566.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 955

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 124/256 (48%), Gaps = 11/256 (4%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +    ++ L       + A++ K SF+ ++S+++R+P+  I+G   +L+ S  G+   
Sbjct: 554 NQELEEKQQELQNALVEAQSANKAKTSFLNNMSHDIRTPINGIMGMLTILEKS--GNDGE 611

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +    +  I+ SS +LL+LVND+LD+A +++  +  +  +I L+ +  E+ +S++ +  E
Sbjct: 612 RAKDCLNKINESSKLLLSLVNDVLDMAKLESDTVVFSDESINLDQVCQEITESLSFQAEE 671

Query: 665 NNIRIKVISDG-KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTV-----ILKAARDNGD 718
             + +    D        ++   L +I   + +N+M ++     +      ++ + D+  
Sbjct: 672 KGLHVIGEHDDYSGIYVWSNAVHLKKILMNLFTNSMKYNKVNGFIYMSMRTIERSEDHMT 731

Query: 719 FIFSVKNNGSSIPEDMCKS-VFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
             F +K+NG  + E+  K+ +F  FV   +       G GLG+ IV+  +   GG +++ 
Sbjct: 732 CEFKIKDNGIGMSEEFIKNELFTPFVQADNSPRSDYNGTGLGMPIVKQLVEKMGGTITVE 791

Query: 776 SSDEGVTTINCRIPSK 791
           S     +     +P K
Sbjct: 792 SKLGEGSCFTVILPFK 807


>gi|241205034|ref|YP_002976130.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858924|gb|ACS56591.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 511

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 4/237 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASS 617
                +A+  K+ F+  +S+ELR+PL  I+GF++++    +G L N    +Y   I  S 
Sbjct: 252 RRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSG 311

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI I    + +L
Sbjct: 312 QHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQL 371

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            +  AD + + Q+   +LSNA+ F+ +G  + +K      G    S+K+NG  IPE+   
Sbjct: 372 PAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIP 431

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V + F   +   +   +G GLGL IV++ +  H G   + S     T +   +P+K
Sbjct: 432 VVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAK 488


>gi|326775398|ref|ZP_08234663.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326655731|gb|EGE40577.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 697

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 9/248 (3%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R   A  + +    + +E + + V  V++ELR+PL+NI G+ +  +        +  
Sbjct: 447 EVGRLAAAFNDMSAHRARLEEQRKAMVSDVAHELRTPLSNIRGWLEAAQDGLADPDPA-- 504

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             +V  +   + +L ++++D+ DLA  DAG+++L+   +   +LL +V  +   +     
Sbjct: 505 --FVSSLLEEAVLLQHIIDDLQDLAAADAGVLRLHPEPVEARELLGQVAAAHQARAENAG 562

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA---ARDNGDFIFSV 723
           + + V       +  AD  RL Q  S ++SNA+  + +G  V L+A     + G     V
Sbjct: 563 VTLTVAGAAPGPALRADPVRLRQAVSNLVSNAVRHTPEGGRVTLRAYACEEEAGTVAVEV 622

Query: 724 KNNGSSIPEDMCKSVFNRFVSN--AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGV 781
            + GS IP +    VF+RF     +   +  G GLGL+IV   +  HGG V  +S     
Sbjct: 623 ADTGSGIPAEDLPHVFDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVDAASVVGEG 682

Query: 782 TTINCRIP 789
           +T   R+P
Sbjct: 683 STFVLRLP 690


>gi|196041818|ref|ZP_03109107.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196027312|gb|EDX65930.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 463

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 207 TTTRNDEIGELSSSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KES 264

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +  
Sbjct: 265 TSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNA 324

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I +       L     D QR  Q+   IL+NA   S + S + +    +N    
Sbjct: 325 MYKERYITVSFSCPPTLL-VNLDEQRFEQVVMNILNNAYRHSKEHSQIHISVIEENKRIS 383

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
            ++++ G  +P +    +F RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 384 ITMEDEGEGMPPEDLPHIFERFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEV 443

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 444 DHGSCFIISLPS 455


>gi|330830927|ref|YP_004393879.1| Tmao reductase sytem sensor tors [Aeromonas veronii B565]
 gi|328806063|gb|AEB51262.1| Tmao reductase sytem sensor tors [Aeromonas veronii B565]
          Length = 941

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 202/578 (34%), Gaps = 52/578 (8%)

Query: 237 IGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVS 296
           +GE   L  +   +R    +A  +      S +E+          ++   G         
Sbjct: 127 VGERLTLMAQGEAQRARLVAAAGQIAELARSQMENAE------TVMVAGLGSLYQQQGAQ 180

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEID-----LAFLATNPS 351
              T++  L    + L  +T                +   E+W  +        L     
Sbjct: 181 ATRTLDRLLEQDLDWLEQMTE------LRHRTLMQQQRIEEMWRSERQEQLQTLLQEGQR 234

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGG 411
              +L+    A   P +         + +        +  W L  G+ L V+  +N    
Sbjct: 235 ELAILQLRAGAVTDPARRQAVEQALTVLAQSDKLVQLRSDW-LGKGEALRVLANAN-EAL 292

Query: 412 TIWMFENLTVQV-DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTE 470
              + + +   V           +   + +  L + +   G    + L    +R ++   
Sbjct: 293 MSSLNQQVGELVSRARDSLGQSQQALSQRLRLLEQALMAIGLLTLLLLMLLMWRMVYGRI 352

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY-- 528
              L      R +A        +    +  A+   +  DE   L   L++  D+ +E   
Sbjct: 353 VWPLQ-----RAVAGMSRLARGDLAPLEPIAS---TGRDELAELGRALQVFRDNAVELGR 404

Query: 529 ------SIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
                 S +     Q       + + V  +R    + E     +  K+ F+  +S+E+R+
Sbjct: 405 YQRELESRVEERTGQLSHANERLNEEVEKQRQARAEAEQA---NRAKSVFLATMSHEIRT 461

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           P+  I+G   LL+ +    L+  Q +Y+  I  S   LL ++NDILD + ++AG ++   
Sbjct: 462 PMNGILGGLTLLEDTH---LSDTQQRYLAAIEHSGESLLEILNDILDYSKIEAGHVEARR 518

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL-GSFVADRQRLLQIFSKILSNAMDF 701
               L  L++E+      K     + + +     L      D  +L Q+   +L NA+ F
Sbjct: 519 EPFPLFQLVDELGALFRPKAEAKGVTLALEYAPWLAPVVEGDLGKLRQVLGNLLGNAVKF 578

Query: 702 SSKGSTVILKAA-------RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR-GQRRG 753
           +++G  + L  A              F V++ G  IP D  ++VF  F       G + G
Sbjct: 579 TARG-QITLTVAPLVCHGPCAEPCIRFVVRDTGPGIPADEQEAVFEAFRQRKRDIGHQGG 637

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            GLGL+I    +   GG + ++S        +  +P +
Sbjct: 638 TGLGLAISRKLVTAMGGELILASEPGKGCEFSFSLPLQ 675


>gi|254520520|ref|ZP_05132576.1| sensory transduction histidine kinase [Clostridium sp. 7_2_43FAA]
 gi|226914269|gb|EEH99470.1| sensory transduction histidine kinase [Clostridium sp. 7_2_43FAA]
          Length = 473

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 124/243 (51%), Gaps = 3/243 (1%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +     E+L K D ++  F+ +VS+ELRSP+T+I GF   +    +     K+
Sbjct: 228 EIGELANSFNIMAESLEKVDNVRREFISNVSHELRSPITSIKGFITGIVDGVIPK--DKE 285

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y+  ++   + L  LVND+LD++T+++G  KL  + + +N+++     ++  K++E  
Sbjct: 286 NYYLNIVNDEVSRLSRLVNDLLDISTMESGKFKLKVAKLDINEIITLCTLNLEGKINEKK 345

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           IR++VI +      + DR R++Q+ + +L NA+ +  +G  + ++          S+ N+
Sbjct: 346 IRVEVIFNDSYEYCIGDRDRIIQVVTNLLENAIKYGDEGGRIQVETYAKGDFVYVSIFNS 405

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
           G +IP++    ++ RF         +   GLGLSIV   ++ H   + +++ +       
Sbjct: 406 GPNIPKEDINKIWERFYKMDKARTNKISTGLGLSIVRLILSQHNQDIWVNNIEGKGVKFT 465

Query: 786 CRI 788
             +
Sbjct: 466 FTL 468


>gi|110834714|ref|YP_693573.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647825|emb|CAL17301.1| sensor histidine kinase/response regulator, putative [Alcanivorax
           borkumensis SK2]
          Length = 646

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 20/286 (6%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           R+ LQG L  L D++         N               A   L + +   + A + K+
Sbjct: 215 RRRLQGELGELQDNI---------NELAGALEGARRKQQAAMTELQDAHRHAQTASQAKS 265

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+  +S+ELR+P+  ++G   LL+ +     N +Q +Y +    S+  LL+++NDILD 
Sbjct: 266 DFLAMMSHELRTPMNGVLGMLQLLEETAQ---NDEQHEYTQAALESTGHLLDVINDILDF 322

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVA--DRQRLL 688
           + ++AG M L+ S   +  LL     +         + +++     L   VA  D  RL 
Sbjct: 323 SRIEAGRMDLDPSFFEILPLLKNCVATFRYVAESKGLYLQLEGAEALAGQVARSDPTRLR 382

Query: 689 QIFSKILSNAMDFSSKGSTVILKAARDNG----DFIFSVKNNGSSIPEDMCKSVFNRFVS 744
           Q+ S ++SNA+ F+ +G   +  +         D   +V + G  IP +    +F  F  
Sbjct: 383 QVLSNLISNAVKFTQEGGVTVSVSVSPVHGDWLDLSIAVADTGIGIPREKRAGLFKAFSQ 442

Query: 745 NAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
                 RR  G GLGL+I      + GG +++   +EG +     +
Sbjct: 443 IDSSTSRRFGGTGLGLAIARKLSEMLGGTLTVDGREEGGSIFTLSL 488


>gi|34580746|ref|ZP_00142226.1| histidine kinase sensor protein [Rickettsia sibirica 246]
 gi|28262131|gb|EAA25635.1| histidine kinase sensor protein [Rickettsia sibirica 246]
          Length = 468

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 209 TNYARQIIEEQLEINRNLKAQIVKVEKTSSSNTKFFTNISHELRTPLNAIIGFSEILMSE 268

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L+      
Sbjct: 269 RDA---EKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLIL 325

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           + T+  +  + +      +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 326 VKTRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNPGGSVTIALEKDEL 385

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 386 AKLVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 445

Query: 774 ISSSDEGVTTINCRI 788
           + S     TTI    
Sbjct: 446 LQSKINEGTTITITF 460


>gi|307301503|ref|ZP_07581263.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306903560|gb|EFN34148.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 1126

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 118/242 (48%), Gaps = 4/242 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + + AL +  E    A+  K+ +V  +S+ELR+PL  ++G+  +L+  +  ++   + 
Sbjct: 656 HKKTDAALQDAKERAESANRAKSRYVVGLSHELRTPLNAVLGYAQILERDE--TIPPPRQ 713

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L+++      +     I
Sbjct: 714 GAIKAIRRSADHLSGLIDGLLDISKIEAGKLQVYSNEINIQDFLDQIVDMFRPQAQAKGI 773

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +      L  +V  D +RL QI   +LSNA+ F+ +G  +    A  +    F+++++
Sbjct: 774 AFEHNRAASLPQYVRTDDKRLRQILVNLLSNALKFTERGH-IRFDVAYRSQVASFTIEDS 832

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I E     +F  F       +  G+GLGL+I        GG +S++S  +  T    
Sbjct: 833 GRGISEKDLPRIFEPFQRGEAEYRMPGLGLGLTITRLLTQTLGGEISVTSEKDKGTAFKV 892

Query: 787 RI 788
           R+
Sbjct: 893 RL 894


>gi|209966271|ref|YP_002299186.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959737|gb|ACJ00374.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 818

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 4/246 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS-KQ 606
           S  AER L +   A       K+ F+ ++S+ELR+PL  IIGF ++L++      +   +
Sbjct: 559 SHEAERLLEQAKAAAELGSRTKSEFLANMSHELRTPLNAIIGFAEVLESELKQQGSPIAK 618

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           + Y   I+AS   LLNL+NDILD++ ++AG ++L        +LL   ++ +  +  E  
Sbjct: 619 AGYASDIAASGRHLLNLINDILDVSKMEAGKVELRERICDPGELLAGCERIVRARAMERR 678

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKN 725
           I +++     L   + D  +  QI   +LSNA+ F++   +V +K   D       +V +
Sbjct: 679 IDLRLEVPPGLPPVLVDDVKFKQIVLNLLSNAIKFTAPSGSVRVKVQADPARGLSIAVSD 738

Query: 726 NGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  I  +  + VF  F    +       G GLGL++      LHGG + I S     TT
Sbjct: 739 TGIGIRAEDLEKVFIPFNQVDNIYARINPGTGLGLALSRGLAELHGGQLFIESVFGEGTT 798

Query: 784 INCRIP 789
              R+P
Sbjct: 799 ATLRLP 804


>gi|168187463|ref|ZP_02622098.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum C str. Eklund]
 gi|169294658|gb|EDS76791.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum C str. Eklund]
          Length = 463

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 121/246 (49%), Gaps = 3/246 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +  +    L    + + K +++K  F+  +S+ELR+PLT+I G+T  L      +  S
Sbjct: 218 YDEFGKLADTLNYMAQEILKNEKLKTEFIASISHELRTPLTSIKGWTVALSLCDPNN-KS 276

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +    +  I   +  L NLV ++LD + + +G + L    + +++LL  +++ +  +  +
Sbjct: 277 EFEDGLTIIEEETDRLSNLVEELLDFSKLSSGKITLKKDYVDIHELLIYLQKQLQPRASK 336

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
           +NI + +    ++ +  AD  RL Q F  IL NA+ F++    V +  + +    I ++K
Sbjct: 337 DNIHLSLECKNEIPNIYADINRLKQSFMNILDNALKFTASDGKVKITLSSNKDSVIINIK 396

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           +NG  IP D    V  +F    +   +   G+GLSI    I+LH G++ I S +   T +
Sbjct: 397 DNGCGIPLDDLPRVTEKFYKGQNSKSKN--GIGLSICSEIISLHNGNLQILSEENKGTEV 454

Query: 785 NCRIPS 790
              +P 
Sbjct: 455 IVCLPL 460


>gi|53712586|ref|YP_098578.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52215451|dbj|BAD48044.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 792

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 168/388 (43%), Gaps = 16/388 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           ++ F  ++V +    + + + +   + ++   + + +    G+I L N     +   +  
Sbjct: 397 VFAFIFISVSLLHTRRRSLIERKNLKILEEAHKRLTLSADGGQISLWNMQGSDIEFDDNY 456

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDL----FAAIITSFDDERKSLQGTL-ELLSDSVLE 527
               G   R    T    Y   D   L    + A+  S   E + ++    E       E
Sbjct: 457 ARLTGVEKRKFKRTDFLEYVHPDDSQLLSSFYEALCKSPGVEIQRVRFRFDEKKGYQWYE 516

Query: 528 YSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                L + +  +       N+ +SV  E  L    +   KA E+K SF+ ++S+E+R+P
Sbjct: 517 LRCRSLKDIKGEMMLAGIMQNIQESVEREHQLIVAKQMAEKA-ELKQSFLNNMSHEIRTP 575

Query: 584 LTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           L  I+GFT++L       ++  +++  +E I+ ++ +LL L+ND+L+++ +D+G +  + 
Sbjct: 576 LNAIVGFTNVLLGEGSEEIDPDEKASMLEIINHNNELLLKLINDVLEISRLDSGSLDFDM 635

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
               + D++ E+ ++    +   +++ ++  D  +      DR R  Q+ S  L+NA  F
Sbjct: 636 KEWNMTDIVKEIYKTYQPLIRS-SLQFRLELDDTVPVPVHTDRLRFAQVISNFLNNANKF 694

Query: 702 SSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           +  G   +  K  + + +    V+++G  I E     +F RF       Q  G GLGL+I
Sbjct: 695 TQNGYIALGCKVDKKHREVRIYVEDSGKGIDEKELMMIFERFYKTDEFEQ--GSGLGLAI 752

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  I    G + + S     +     +
Sbjct: 753 SKVIIERLSGRIKVHSEKGKGSCFTVIL 780


>gi|219669755|ref|YP_002460190.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219540015|gb|ACL21754.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 601

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 146/364 (40%), Gaps = 34/364 (9%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +    +    ++ +S+GV +   +G I  +N   ++LW+   +          + A   
Sbjct: 270 LSEERNLLLGIVEGISDGVIMLDGEGEILYTNEPAKALWQGSGSEEESSERKETLMAFLR 329

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
                 +G ++   I  + D +   +        D               +    ++T S
Sbjct: 330 E---SMEGVEIDKKIHFNLDTQVLQVAMATTQFEDG----------KQGYVAVLRDITAS 376

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RAE+               +  F+  V++ELR+PL  I G+ + ++   +     +Q++
Sbjct: 377 LRAEKE--------------RRDFMASVTHELRTPLHLIQGYLEAIQDGVIAK--EEQTE 420

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ +   +  L  LV ++ +L   ++         I L   + E+      +  E  I 
Sbjct: 421 HIDLVLEEAKRLAKLVMELQELDRFESWK-NFEKKEIDLAGFIQELGYRFQGRADELGIH 479

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +++  D   G   A+R RLLQ+F  ++ NA   + +G +V ++         F+V++ G 
Sbjct: 480 LQM--DNGKGVIHANRDRLLQVFINLIENAFRHTPEGKSVYIRIIDSEEHIQFNVEDQGE 537

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP      +F+RF        R   G+GLGLSIV   +  H G + + S     TT   
Sbjct: 538 GIPPQALPHIFDRFYRVDKSRSRKEGGMGLGLSIVMLIVEAHNGEIKVESEVGKGTTFKV 597

Query: 787 RIPS 790
            +P 
Sbjct: 598 ILPK 601



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 34/164 (20%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           ++++      I+  ++  + + D    + + N     LW+   +   ++   + L+ FLR
Sbjct: 270 LSEERNLLLGIVEGISDGVIMLDGEGEILYTNEPAKALWQGSGSEEESSERKETLMAFLR 329

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV--IVTSNPRG--GTIWMF 416
            +                    +  E  K      + Q L V    T    G  G + + 
Sbjct: 330 ESM-------------------EGVEIDKKIHFNLDTQVLQVAMATTQFEDGKQGYVAVL 370

Query: 417 ENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAV 449
            ++T  +  E            +  T + +    ++ + +GV  
Sbjct: 371 RDITASLRAEKERRDFMASVTHELRTPLHLIQGYLEAIQDGVIA 414


>gi|153872459|ref|ZP_02001345.1| histidine kinase [Beggiatoa sp. PS]
 gi|152071075|gb|EDN68655.1| histidine kinase [Beggiatoa sp. PS]
          Length = 823

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 163/395 (41%), Gaps = 60/395 (15%)

Query: 417 ENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSP 476
           E L  Q +   + N  ++ Q E ++H           G ++  N                
Sbjct: 20  EELQAQQEEMQQVNEELQHQREELEH---------KQGELQQRN---------------- 54

Query: 477 GTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNA 536
                 + +       +S+        +   ++E +     L+   D V          A
Sbjct: 55  ----EELQSQSEELQTQSEELQTQQEELRHSNNELEERTQALKKQKDEV---------QA 101

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           + +       +  RA  A+ EK + L  A + K+ F+ ++S+ELR+PL +++  + LL  
Sbjct: 102 KNIALEKTQAEMARARAAIEEKAQELELASKYKSEFLANMSHELRTPLNSLLILSQLLAD 161

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +K  +L  KQ +YV  I +S + LL L+N+ILDL+ V+AG +++    + L DL+  VKQ
Sbjct: 162 NKTNNLTDKQVEYVRTIHSSGSDLLTLINEILDLSKVEAGKIEIRSEDVSLTDLVATVKQ 221

Query: 657 SIATKMHENNIRIKVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGST---VILKA 712
                  E  +  +V     + +    D QRL QI + +LSNA  F+++G     +   A
Sbjct: 222 KFQHLATEKGLAFQVQIAQDVPTVLHTDEQRLKQIINNLLSNAFKFTTQGEVRLDIESFA 281

Query: 713 ARDNGD----------------FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GV 754
           +   G                    S+ + G  IP+D  + +F  F        RR  G 
Sbjct: 282 SHQEGKDVLPLGEDLREGYQKFITISITDTGIGIPKDKQQIIFEAFQQADGSTSRRFGGT 341

Query: 755 GLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           GLGLSI      L GG + + S +   +T    +P
Sbjct: 342 GLGLSISRQLARLLGGDLRLLSEEGKGSTFVLSLP 376


>gi|27376077|ref|NP_767606.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27349216|dbj|BAC46231.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 1123

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 6/255 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R +  L    E    A+  K+ +V  +S+ELRSPL  I G+  LL+ 
Sbjct: 641 QTTLLIQEIDAHKRTDAELQRAKEVAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               +LN+K    V  +  S+  L  L++ ILD++ ++AG + L+   + L++ L+++  
Sbjct: 701 D--TTLNTKPRDQVRVVRRSADHLSGLIDGILDISKIEAGRLYLSRDEVRLSEFLDQLVG 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +     I         L   V AD +RL Q+   +LSNA+ F+  GS V       
Sbjct: 759 MFRLQAAAKGIDFVFRRPAHLPVVVYADEKRLRQVLINLLSNAIKFTQTGS-VQFVVHYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
           +    F V + G  I  D  + +F  F   A      + G GLGL+I      + GG + 
Sbjct: 818 SPVAEFEVIDTGPGIQGDDLERIFAPFERGALGVSQPQTGTGLGLTISRLLAGVMGGDIK 877

Query: 774 ISSSDEGVTTINCRI 788
           + S+    +T   +I
Sbjct: 878 VMSTVGTGSTFKVKI 892


>gi|67538252|ref|XP_662900.1| hypothetical protein AN5296.2 [Aspergillus nidulans FGSC A4]
 gi|238054329|sp|Q9P896|TCSA_EMENI RecName: Full=Two-component system protein A
 gi|40743266|gb|EAA62456.1| hypothetical protein AN5296.2 [Aspergillus nidulans FGSC A4]
 gi|259485266|tpe|CBF82150.1| TPA: Two-component system protein A (EC 2.7.13.3)
           [Source:UniProtKB/Swiss-Prot;Acc:Q9P896] [Aspergillus
           nidulans FGSC A4]
          Length = 682

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 156/390 (40%), Gaps = 25/390 (6%)

Query: 412 TIWMFENLTVQVDLETKYNTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTE 470
            +   ENL  +V +  ++  + +     +D + +  + +  P G I   N     L   +
Sbjct: 147 VVLEVENLRAEV-INNQHAYMNETYKILVDTVKDYAIFMLDPTGHIATWNAGAGVLKGYK 205

Query: 471 ENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDS--VLEY 528
              +  G H   + +   R     D      A+     + R   +G       S      
Sbjct: 206 AEEI-IGKHFSILYSPADR-----DNGKPARALDVCLREGRIEDEGWRYRRDGSRFWANV 259

Query: 529 SIIPLPN-AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNI 587
            I P+    Q +       D    + A      A  ++  +K  F+ ++S+E+R+P+  +
Sbjct: 260 LITPIYQFGQHVGFVKVTRDLTERKEAEACMIAAFEESSRLKTDFLANISHEIRTPMNGM 319

Query: 588 IGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVL 647
                +L  +    L+ +Q ++   +  S ++LL +VND+LD + + +G   L+   + +
Sbjct: 320 QIALTMLTDT---GLSEEQREHANIVQDSMSLLLQIVNDVLDYSKLSSGSFSLHADMLDI 376

Query: 648 NDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGS 706
            +++  V ++  + + E  + +      KL +    D  R  Q+   ++ NA+ F+ KGS
Sbjct: 377 REIVGAVVRNCRSSLQE-GVELDTEISPKLPTRMRGDPLRYRQVLQNLVGNAVKFTEKGS 435

Query: 707 T-VILKAARDNGD-----FIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGL 758
             V + ++ D  D         V + G  +P+    ++F  F    N+   + +G GLGL
Sbjct: 436 IHVKITSSTDEEDSDSSVVRTEVTDTGIGVPDSAINTLFTPFSRFANSAARKYQGTGLGL 495

Query: 759 SIVESFINLHGGHVSISSSDEG-VTTINCR 787
           SI +S   L  G V  S +     +     
Sbjct: 496 SICKSLAELMDGSVGYSPNPNASGSVFWFT 525


>gi|153815452|ref|ZP_01968120.1| hypothetical protein RUMTOR_01687 [Ruminococcus torques ATCC 27756]
 gi|317502264|ref|ZP_07960437.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089009|ref|ZP_08337916.1| hypothetical protein HMPREF1025_01499 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847094|gb|EDK24012.1| hypothetical protein RUMTOR_01687 [Ruminococcus torques ATCC 27756]
 gi|316896379|gb|EFV18477.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406461|gb|EGG85974.1| hypothetical protein HMPREF1025_01499 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 468

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 137/320 (42%), Gaps = 9/320 (2%)

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWD--LFAAIITSFDDERKSLQGTLELLSDSVLEYSI 530
            L   + +  I   C+    +       +FA  +      +  +   L  +S++  +Y+I
Sbjct: 150 YLLIHSPVSAIEERCAPIMTQVYISTAVIFALSLIFLLGVQFFIHRPLRQISEAAKQYAI 209

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
               N    +      +      +L      L+  D+ +   V +VS++ RSPLT+I G+
Sbjct: 210 ---GNLDYEIPVHTHDELGYLSASLNYMAVRLKDMDDYQKKIVANVSHDFRSPLTSIKGY 266

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +        +Y+  I   +  L +L  D+L L   D   + LN S   + ++
Sbjct: 267 VEAMADGTIPP--ELYGKYLNIILFETERLTDLTRDLLTLNEFDTKELLLNKSDFDIQEV 324

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           L     S  +   + +I I+++        +AD++++ Q+   ++ NA+ FS   S + +
Sbjct: 325 LKSTAASFESACTQKHISIELLLMPDAVFVLADKRKIQQVLYNLIDNAIKFSENDSLITV 384

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLH 768
           + +  N     SVK++G  IP      ++ RF  +       ++G GLGLSIV+  I  H
Sbjct: 385 EVSEKNEKVFISVKDHGIGIPRQEQTKIWERFYKSDLSRGKDKKGTGLGLSIVKEIIQAH 444

Query: 769 GGHVSISSSDEGVTTINCRI 788
             H+++ S++   T     +
Sbjct: 445 DEHINVVSTEGVGTEFIFSL 464


>gi|16265269|ref|NP_438061.1| putative two-component sensor histidine kinase protein
           [Sinorhizobium meliloti 1021]
 gi|15141409|emb|CAC49921.1| putative two-component sensor histidine kinase protein
           [Sinorhizobium meliloti 1021]
          Length = 1126

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 118/242 (48%), Gaps = 4/242 (1%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + + AL +  E    A+  K+ +V  +S+ELR+PL  ++G+  +L+  +  ++   + 
Sbjct: 656 HKKTDAALQDAKERAESANRAKSRYVVGLSHELRTPLNAVLGYAQILERDE--TIPPPRQ 713

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L+++      +     I
Sbjct: 714 GAIKAIRRSADHLSGLIDGLLDISKIEAGKLQVYSNEINIQDFLDQIVDMFRPQAQAKGI 773

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
             +      L  +V  D +RL QI   +LSNA+ F+ +G  +    A  +    F+++++
Sbjct: 774 AFEHNRAASLPQYVRTDDKRLRQILVNLLSNALKFTERGH-IRFDVAYRSQVASFTIEDS 832

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
           G  I E     +F  F       +  G+GLGL+I        GG +S++S  +  T    
Sbjct: 833 GRGISEKDLPRIFEPFQRGEAEYRMPGLGLGLTITRLLTQTLGGEISVTSEKDKGTAFKV 892

Query: 787 RI 788
           R+
Sbjct: 893 RL 894


>gi|329963635|ref|ZP_08301110.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328528180|gb|EGF55159.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 570

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 109/238 (45%), Gaps = 5/238 (2%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF-TDLLKTSKLGSLNSKQSQYVEYI 613
           L  +     +   IK  F   +S+ELR+PLT I    +++L+      L+    +++  +
Sbjct: 20  LHHQINLEHQLSNIKLRFFTDISHELRTPLTLITSPVSEVLEHE---PLSPNARKHLTLV 76

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             ++  +L LVN ILD   ++   MK+      +  LL  V  +      E +I   + +
Sbjct: 77  HKNTERMLRLVNQILDFRKIENQKMKVLLEKTDIIALLQRVMDNFRLMAEEKHIDFNLQA 136

Query: 674 DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPED 733
           + +      D+ +  +I   ++SNA  ++ +  ++ + AA  N +   SVK+ G  I   
Sbjct: 137 NPETIYCWIDQDKFEKIVFNLISNAFKYTPEHKSITVSAAIQNENLTVSVKDEGIGIDPK 196

Query: 734 MCKSVFNRFVSNAH-RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +++F RF +       +   G+GLS+V+  I LH G++ ++S     +     +P 
Sbjct: 197 KQQTLFQRFETLVRYNILQPSSGIGLSLVKELIELHQGNIQVNSQPGEGSEFIITLPL 254


>gi|323499089|ref|ZP_08104069.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315924|gb|EGA68955.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 774

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 106/241 (43%), Gaps = 10/241 (4%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           L         A++ K+ F+  +S+E+R+P+  ++G  ++L+ +   +L+ +Q + V   +
Sbjct: 227 LNAARADAEMANDSKSRFLASMSHEIRTPMNGVLGILNILEET---NLSKEQRKLVTTAT 283

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
            S   LL+++NDILD   +++  + L      L+  +  V           ++ I    +
Sbjct: 284 ESGHFLLSVINDILDFTRMESNTLILESKPFDLHRCVTSVVDGFYPTATSQDLLIHCYIE 343

Query: 675 GKLG-SFVADRQRLLQIFSKILSNAMDFSSKGST-VILKAARDNG---DFIFSVKNNGSS 729
             +    + D  R+ QI   ++ NA+ F+  GS  + +     +         + + G  
Sbjct: 344 PDVPIHVMGDENRIKQILLNLIGNAIKFTHDGSVRIKMSLVPSDDSQATIQCEISDTGIG 403

Query: 730 IPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I +     +F+ F  V   +   + G GLGL+I +   NL  G V + S  +  +T    
Sbjct: 404 ISKSAIDYLFDEFTMVDQTYSRSKEGSGLGLAICKRLCNLMDGDVKVQSEPKVGSTFTFT 463

Query: 788 I 788
           I
Sbjct: 464 I 464


>gi|294506832|ref|YP_003570890.1| PAS/PAC/histidine kinase protein [Salinibacter ruber M8]
 gi|294343160|emb|CBH23938.1| PAS/PAC/histidine kinase protein [Salinibacter ruber M8]
          Length = 851

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 116/672 (17%), Positives = 236/672 (35%), Gaps = 80/672 (11%)

Query: 175 YSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQ 234
              L   T +  +      V + + D++       D        N    +     G+  +
Sbjct: 202 RGLLLNITERIDEKRRREQVIRRVTDAIVE----VDAEWCFTLVN---DQAEALYGMKEE 254

Query: 235 KAIGESR-KLFKEEIKKRMISSSALEKNFCETVSTLEHGNNK--SYKIVRVLNSFGEAGI 291
             +G +    F      R            E V   EH       + I    N  G    
Sbjct: 255 HLLGRTLWDAFPRTKGTRFEEEYRWVMRSREPVRFEEHFERMGAWFDIQIYPNPDGGLAF 314

Query: 292 AIDV-----SKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
             D       +E  + ++      I  N+T  I        + + N +FVE++  +    
Sbjct: 315 YFDDVTERKEREEKLREREELLRSITENVTEGIYRSTSEEGIVYANSAFVEMFGYES--- 371

Query: 347 ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETH------KDTWHLPNGQTL 400
                        R   +  +   +        ++Y+  +        +  +   +G T 
Sbjct: 372 -------------RDELRAADPSTFYADPAEREALYRQEDEQGGLDGVEVQFQRNDGSTF 418

Query: 401 HVIVTS----NPRGGTIW---MFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPD 453
             ++++     P G  ++       +T +   E    +  +         S  ++V   D
Sbjct: 419 TGLLSTQQVDAPDGNQVYNDGAVTEITQRKRQEQMLKSRRRKIEALYRATSGLLSVENRD 478

Query: 454 ---GRI-----KLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFA-AII 504
              GRI     ++     R +   E   L P   +    +       +    DL A   I
Sbjct: 479 AVPGRIAEVLQEVFGFPLRHIGLVEGEMLVPKKTVGEDLSRMPEPKAQPLSEDLMATRAI 538

Query: 505 TSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQTMLTFVNVT---------------- 546
            + +       G LE   D  ++   + IP+     ++                      
Sbjct: 539 QAGEAVVVESTGGLENDIDYGTLSTLAGIPIGGHGAVVVGKEAGTFDALDLRLLEVLGGY 598

Query: 547 -----DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS-KLG 600
                  +  E  L +  E   +A ++K++ + ++S+E+R+PL ++IG  DLL+   +  
Sbjct: 599 ATLVLGRLEREERLVQAREEAEEAAQLKSAMLANMSHEVRTPLMSMIGSADLLREDLEEA 658

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            L  + ++  E I  S   L   ++ +L+L+ +++G   L+  +  L  ++ EV Q +  
Sbjct: 659 GLEGEPAEMAEQIFRSGQRLRETLDSVLELSRLESGAYTLDDDSAYLGVIVREVAQELHL 718

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA-RDNGDF 719
           + HE  +R++V   G       D   + +I   ++ NA+ F+ +G  V ++    D    
Sbjct: 719 RAHEKGVRLEVGGPGASVEVRLDETAVRRIVRNLVENAIKFTPEGGEVQVRVEPEDEETA 778

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
           + +V++ G  I E+  + +F+ F   +     +  G GLGLSIV+    + GG + + S 
Sbjct: 779 LLAVEDTGVGIAEEAREDIFDAFKQESEGLDREYEGSGLGLSIVDRLTTMLGGTIEVESE 838

Query: 778 DEGVTTINCRIP 789
               T    R+P
Sbjct: 839 KGVGTRFAVRLP 850



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 131/426 (30%), Gaps = 44/426 (10%)

Query: 173 GIYSELAETTLKCKKLSNHISV----FKVLFDSLD-FLV-WHRDQAG--DILWANISYKK 224
           G     AET  +        +      + L +++      +     G   I +      +
Sbjct: 70  GFVGRPAETRRREAAPDGRQAARNARLEALTETMPGVPCEFRVGPDGEQSIAFIGDGATE 129

Query: 225 N---TETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVST-LEHGNNKSY--K 278
                      +++ +    +  + E  + +  +      + + V      G        
Sbjct: 130 LLGLAPEPDGFYERFVEHIPESHRGEFLRSVEEAVTTRSRWRQEVPFDRPDGERIWLLGS 189

Query: 279 IVRVLNSFGEA--GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFV 336
                   G    G+ +++++ I   D+     +++  +T AI   D        N    
Sbjct: 190 AEPDPQDKGVLFRGLLLNITERI---DEKRRREQVIRRVTDAIVEVDAEWCFTLVNDQAE 246

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPN 396
            L+ +    L      D          +  E+  W         V +S E  +   H   
Sbjct: 247 ALYGMKEEHLLGRTLWDAFPRT--KGTRFEEEYRW---------VMRSREPVRFEEHFER 295

Query: 397 -GQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGR 455
            G    + +  NP GG  + F+++T + + E K     ++     ++++EG+     +  
Sbjct: 296 MGAWFDIQIYPNPDGGLAFYFDDVTERKEREEKLREREELLRSITENVTEGIYRSTSEEG 355

Query: 456 IKLSNPAFRSLWKT---EENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERK 512
           I  +N AF  ++     +E R +  +      A     Y + D       +   F  +R 
Sbjct: 356 IVYANSAFVEMFGYESRDELRAADPSTFYADPAEREALYRQEDEQGGLDGVEVQF--QRN 413

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTD---SVRAERALTEKNEALRKADEIK 569
                  LLS   ++      P+   +     VT+     R E+ L  +   +       
Sbjct: 414 DGSTFTGLLSTQQVDA-----PDGNQVYNDGAVTEITQRKRQEQMLKSRRRKIEALYRAT 468

Query: 570 NSFVQH 575
           +  +  
Sbjct: 469 SGLLSV 474


>gi|115375537|ref|ZP_01462796.1| SocD [Stigmatella aurantiaca DW4/3-1]
 gi|115367492|gb|EAU66468.1| SocD [Stigmatella aurantiaca DW4/3-1]
          Length = 546

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 5/230 (2%)

Query: 567 EIKNSFVQHVSYELRSPLTNII-GFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
             +   +  VS++L++PL  +  G   LL+       +    ++   I  +S   L L++
Sbjct: 312 RAREDLLAVVSHDLKNPLGVVQLGAALLLRERPNVPRDEHVHKHATRIRDASDRALRLIS 371

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQ 685
           D+LD   ++ G + L    +  + L+ E   SI      + +++ V     L   V DR 
Sbjct: 372 DLLDWGRLEEGRLPLETREVDASALVLEAVDSIRPLAEAHGLQVVVELPEGLPRVVCDRG 431

Query: 686 RLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSN 745
           R+LQ+   +L NA+ F+  G  V + A     +    V++ G  IP +    VF+R+   
Sbjct: 432 RVLQVLGNLLGNAVKFTDPGGRVTVGARTQGDEARLYVRDTGKGIPPEQLSYVFDRYWQA 491

Query: 746 AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI---PSKE 792
                R G GLGL+I +  +  HGG +   S+    +T +  +   PS E
Sbjct: 492 KDSVSR-GTGLGLAIAKGLVEAHGGRIEAQSTLGEGSTFSFTLHAVPSHE 540


>gi|237746436|ref|ZP_04576916.1| response regulator receiver domain-containing protein [Oxalobacter
           formigenes HOxBLS]
 gi|229377787|gb|EEO27878.1| response regulator receiver domain-containing protein [Oxalobacter
           formigenes HOxBLS]
          Length = 994

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 115/250 (46%), Gaps = 11/250 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           + +R   AL E   A   A   K+ F+ ++S+++R+P+  I+G T +       +  +  
Sbjct: 456 EQLRNHIALKEAFLAAENASRAKSDFLSNMSHDIRTPMNAIMGMTAIAAMHV--NEPAYI 513

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
              +  I+ SS  LL L+NDILD++ +++G + L   T VL  ++  +      ++   N
Sbjct: 514 QDCLGKITLSSRHLLKLINDILDMSRIESGKVFLVEETFVLPTMVEALLAISLPQIRAKN 573

Query: 667 IRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------GDF 719
            ++KV I++      V D  RL Q+   I+ NA+ F+ +G  + L+           G +
Sbjct: 574 QQLKVQIANIVHEEVVGDPLRLQQVCINIMGNAVKFTPEGGHIALQITEKPCSLHGFGCY 633

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSS 777
            F   ++G  + ++    +F  FV   +   R   G GLG+SI  + + +  G + + S 
Sbjct: 634 EFVFGDDGIGMEKEFLDRIFEPFVRADNSRVRKAEGTGLGMSIARNIVRMMNGDIEVWSE 693

Query: 778 DEGVTTINCR 787
               +     
Sbjct: 694 PGKGSRFTVT 703


>gi|91205043|ref|YP_537398.1| histidine kinase sensor protein [Rickettsia bellii RML369-C]
 gi|91068587|gb|ABE04309.1| Histidine kinase sensor protein [Rickettsia bellii RML369-C]
          Length = 498

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 239 TNYARHIIEEQLVTNRNLKAEIIKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 298

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           K      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L++     
Sbjct: 299 K---DPEKSRNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLVSSSLIL 355

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +  +  +  + +   S  +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 356 VKPRADQAGVELVNKSPKEHIVIKADPKRLKQVFLNLLSNAVKFTNAGGSVTITMEKDEL 415

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 416 AKLVYIKVIDTGIGIEEKDIPKTLSTFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 475

Query: 774 ISSSDEGVTTINCRI 788
           + S     TTI    
Sbjct: 476 LQSKINEGTTIILTF 490


>gi|86358053|ref|YP_469945.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86282155|gb|ABC91218.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 513

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 4/237 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASS 617
                +A+  K+ F+  +S+ELR+PL  I+GF++++    +G L N    +Y   I  S 
Sbjct: 254 RRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSG 313

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI I    + +L
Sbjct: 314 QHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQL 373

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            +  AD + + Q+   +LSNA+ F+ +G  + +K      G    S+K+NG  IPE+   
Sbjct: 374 PAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIP 433

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V + F   +   +   +G GLGL IV++ +  H G   + S     T +   +P+K
Sbjct: 434 VVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAK 490


>gi|290892746|ref|ZP_06555738.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557806|gb|EFD91328.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 459

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 15/282 (5%)

Query: 520 LLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER---------ALTEKNEALRKADEIKN 570
           L+S   +   ++ L NA   +   N   ++   R         +  +    L K++  + 
Sbjct: 181 LISGRYIVNPVVKLTNATKKIRKGNYDVALEVRRKDEIGQLADSFAKMASELEKSEAARQ 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            FV +VS+EL+SPLT++ GF  LL +  L     +Q++Y+  +S  +T L +L   +L L
Sbjct: 241 EFVANVSHELQSPLTSMQGFARLLGSGTL--TEKEQAEYLTVLSEETTRLSSLTKQLLTL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A++D          + L     ++ Q       E  + I +  D    ++  D + L Q+
Sbjct: 299 ASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINL--DLADVNYTGDAELLYQV 356

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQ 750
           +S +L+NA+ F+ +G  + +    +  +    V+++G  I +     +F RF        
Sbjct: 357 WSNLLTNAIKFTPQGGNIQIHLYDEGTNVFVEVQDSGVGISKSDMAKIFERFYKANQSRT 416

Query: 751 R--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           R     GLGLSI +  I LH G +++ SS E  TT   ++P 
Sbjct: 417 REEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458


>gi|229159730|ref|ZP_04287739.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803]
 gi|228623755|gb|EEK80572.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803]
          Length = 461

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 168/434 (38%), Gaps = 33/434 (7%)

Query: 375 KENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            E + ++ K   +H+D      + QT+  +        T  +  N     D+  K N + 
Sbjct: 37  NEEMTALLKRGNSHRDVLEKYFDKQTISHVALMESEAETTVVITN--ANKDVLAKSNEIN 94

Query: 434 KVQGETIDHL-----SEGVAV---FGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIA 484
               + I+ +      +G  +   +     I   +P   +        +  GT  I  + 
Sbjct: 95  TTIKKHIEKMQTRTDHDGAIIENHWKTSNYICTVSPIVVAGKTEGYVYMFLGTESIEEMV 154

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERK------SLQGTLELLSDSVLEYSIIPLPNAQT 538
              +R +  +        +IT F   R        ++   E +S   L  S+        
Sbjct: 155 NGLTRQFIIAGVITFLLTVITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSL-------- 206

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
             T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+    K
Sbjct: 207 --TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--K 262

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
             +   ++ +Y+  I   S  + NLV D+  LA ++     +  + + L+  L  + + +
Sbjct: 263 ESTPPEQRLRYLSIIKDESDYITNLVQDLFLLAQMEKHSFSIVVTEVQLHSFLTRITEKV 322

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                E ++++ +     L     D QR  Q+   ILSNA   S + S + +    +   
Sbjct: 323 NAMYKERHVKVSLTCPSSLL-VKLDEQRFEQVIVNILSNAYRHSKEHSHINISVTEETKR 381

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              ++K+ G  IP +    +F+RF            G GLGLSIV+  + LHGG++++SS
Sbjct: 382 ISITIKDEGEGIPPEDLSHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVSS 441

Query: 777 SDEGVTTINCRIPS 790
                +     +PS
Sbjct: 442 EVNHGSCFIISLPS 455


>gi|259907005|ref|YP_002647361.1| aerobic respiration control sensor protein ArcB [Erwinia pyrifoliae
           Ep1/96]
 gi|224962627|emb|CAX54082.1| Aerobic respiration control sensor protein ArcB [Erwinia pyrifoliae
           Ep1/96]
 gi|283476800|emb|CAY72638.1| aerobic respiration sensor-response protein [Erwinia pyrifoliae DSM
           12163]
          Length = 779

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 149/374 (39%), Gaps = 14/374 (3%)

Query: 419 LTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT 478
           ++ + + + +           +D   + V     D +    N A   L    E +L   +
Sbjct: 140 MSRREEAQIELEQQSSFLRSFLDASPDLVFYRNSDRQFSGCNRAMELLTGKSEKQLIGLS 199

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
                    +    E+D       +  +++   +   G       +  E   +P  +   
Sbjct: 200 PKEVYDDDAATKVLETDEKVFHHNVSLTYEQWLQYPDG-----RKACFEIRKVPYYDRVG 254

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
             + +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  + 
Sbjct: 255 KRSGLMGFGRDITER--KRYQDALENASREKTTFISTISHELRTPLNGIVGLSRILLDTH 312

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L+ +Q +Y++ I  S+  L N+ ND++++  ++   ++L+   +     L +++   
Sbjct: 313 ---LDQEQLKYLKTIHVSAITLGNIFNDVIEMDKMERRKVQLDTQPMDFTGFLADLENIS 369

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
              +    ++  + +   L    +AD  RL QI   ++ NA+ F+ +G  V+    +   
Sbjct: 370 GLLVEPKGLKFVLETQPPLPHKILADGTRLRQILWNLIGNAVKFTRQGEIVVRVGYQSEE 429

Query: 718 DFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSI 774
              F V+++G  IP+D    +F  +     R   +   G G+GL++        GG +S+
Sbjct: 430 CLRFDVQDSGIGIPQDEQDKIFAMYYQVKDRRGGKPATGTGIGLAVSRRLAQSMGGDISV 489

Query: 775 SSSDEGVTTINCRI 788
           S +    +     +
Sbjct: 490 SGAPGKGSCFTLTL 503



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 167 RILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT 226
           R+  +  +  E++       +L    S  +   D+   LV++R+        N + +  T
Sbjct: 129 RLQVMARLKDEMSRREEAQIELEQQSSFLRSFLDASPDLVFYRNSDRQFSGCNRAMELLT 188

Query: 227 ETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL-------EHGNNKSYK 278
              G   ++ IG   ++++ ++   +++ +   EK F   VS           G    ++
Sbjct: 189 ---GKSEKQLIGLSPKEVYDDDAATKVLETD--EKVFHHNVSLTYEQWLQYPDGRKACFE 243

Query: 279 I------VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
           I       RV    G  G   D+++     D L +
Sbjct: 244 IRKVPYYDRVGKRSGLMGFGRDITERKRYQDALEN 278


>gi|224535633|ref|ZP_03676172.1| hypothetical protein BACCELL_00497 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522754|gb|EEF91859.1| hypothetical protein BACCELL_00497 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 224

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           +K++F+ ++S+E+R+PL +I+GF+DLLK  +  S   +  Q+V+ I+ + T+LL L+NDI
Sbjct: 2   LKSAFLANMSHEIRTPLNSIVGFSDLLKDIEAFS-PEEVKQFVDTINTNCTLLLALINDI 60

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV-ISDGKLGSFVADRQR 686
           LDL+ +++G M   ++   L  ++ ++  S    M    + + + + +G+  S V D  R
Sbjct: 61  LDLSRIESGSMDFRFAGYNLTFVMQQIYDSQRLSMP-RGVELVMKLPEGEGKSIVTDSVR 119

Query: 687 LLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA 746
           L Q+ +  ++NA  F+++GS        + G  +F V++ GS I E+  + +F RF    
Sbjct: 120 LKQVINNFINNAKKFTTQGSITFGFQTEEPGYTVFFVEDTGSGISEENQRRIFERFYKVD 179

Query: 747 HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              Q  G GLGLSI ++ +    G +++SS     T    R+P
Sbjct: 180 SFTQ--GAGLGLSICQTIVERFRGEINVSSELGKGTRFTVRVP 220


>gi|47566186|ref|ZP_00237214.1| histidin [Bacillus cereus G9241]
 gi|47556739|gb|EAL15070.1| histidin [Bacillus cereus G9241]
          Length = 466

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 128/280 (45%), Gaps = 5/280 (1%)

Query: 511 RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKN 570
           RK +      LS      + +   +    +T  +  +  R  +A  +   +L   D  + 
Sbjct: 181 RKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK 240

Query: 571 SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL 630
            F+ +VS+ELR+PL+ I G+++ +          +Q +  + I   +  +  LV+D+LDL
Sbjct: 241 EFLANVSHELRTPLSYIKGYSEAILDGVAKG--PQQEKVTQLIHKEADRMQRLVHDLLDL 298

Query: 631 ATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQI 690
           A ++     L    IV + L+ +V  +   K  E  I I    + ++   + D  R+ Q+
Sbjct: 299 AQLEGEHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKICISTNLNPEII-VMIDEDRMQQV 357

Query: 691 FSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HR 748
              +L NA+ ++++   +++   + +     S+K+ G  I  +  +++  RF        
Sbjct: 358 LHNVLDNAIRYTNQNGAIMITLRQIDDYCELSIKDTGIGIDTEHLENLGQRFYRVDKARS 417

Query: 749 GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
            Q  G GLGL+IV   +++H G   I S+    TT++ ++
Sbjct: 418 RQHGGTGLGLAIVRQIVHIHDGQWRIESAKGNGTTVSIKL 457


>gi|301059368|ref|ZP_07200295.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300446597|gb|EFK10435.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 571

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 3/237 (1%)

Query: 555 LTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYIS 614
           LT +     K    K SFV +VS+EL++PLT+I  + +LL   ++   + K+  Y++ I 
Sbjct: 334 LTWQAHRNMKDALQKTSFVSNVSHELKTPLTSIRMYAELLFEGRIKDPD-KKKTYLQVIV 392

Query: 615 ASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISD 674
           + S  L  LVN++LD + ++ G    +   I LN+ L EV  S   ++ E  + I     
Sbjct: 393 SESQRLTRLVNNVLDFSRLEQGRKTYHPQKIDLNEFLMEVVDSHRLRIKEAGMTIDTHFL 452

Query: 675 GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDM 734
           G+     ADR  + Q+F  ++ N++ ++  G  V++   ++  D    +++ G  +PE  
Sbjct: 453 GEKIFVNADRDAIEQVFINLIDNSIKYAGPGIEVVVSVNKNGKDCEIRIEDRGPGVPEAD 512

Query: 735 CKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
              +F +F         +++G GLGLSI        GG++   S D G +    R+P
Sbjct: 513 RHKIFEKFHRVDDTLTSKQQGSGLGLSIARKISRDLGGNLVYESRDGGGSCFIVRLP 569


>gi|269837966|ref|YP_003320194.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
 gi|269787229|gb|ACZ39372.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
          Length = 366

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 124/290 (42%), Gaps = 14/290 (4%)

Query: 513 SLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA-----------ERALTEKNEA 561
             Q +L L  D  L  +I+          + +   + RA           +RA       
Sbjct: 67  RWQVSLPLRHDGRLLGAIVAGSRKAVAPDWWDEDRAGRAASLIAAAIDHHQRAARPAGRL 126

Query: 562 LRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILL 621
             +   +++     +S+E+R+PL +I G+   L           + +++  I A +  L 
Sbjct: 127 ASQGAHLRSDLAAILSHEMRTPLASIKGYASALLLEDAYWDEETRREFLLAIDAETDHLT 186

Query: 622 NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFV 681
            L+ D+LD + ++AG +++    I+L  ++      +A +   +  R  +       + +
Sbjct: 187 QLIEDVLDASIIEAGALRIEPEPILLPHMVRRAIDKLALRTDRH--RFVLSFPPDFPAVM 244

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNR 741
           AD  R+ Q+ S +L NA+ +S +G  +++       + + SV + G  I  +    +F R
Sbjct: 245 ADALRIDQVLSNLLDNAVKYSPQGGLIVVSGRVAGDEVVVSVADQGIGIAPEHLNKLFER 304

Query: 742 FVSNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
           +   +  G+R  G GLGL I ++ I  HGG +   S+    T  +  +P 
Sbjct: 305 YFRASTNGRRVAGTGLGLPISDAIIRAHGGRIWAESTVGQGTVFSFTLPL 354


>gi|153811917|ref|ZP_01964585.1| hypothetical protein RUMOBE_02310 [Ruminococcus obeum ATCC 29174]
 gi|149832051|gb|EDM87136.1| hypothetical protein RUMOBE_02310 [Ruminococcus obeum ATCC 29174]
          Length = 674

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 89/514 (17%), Positives = 193/514 (37%), Gaps = 59/514 (11%)

Query: 322 FDQNRYLQ-------FHN-RSFVELWEIDLAFLATNP----SNDELLEFLRSANKLPE-Q 368
           FD+N  L        F N   F+E ++ D+           +  ++ E L   + L    
Sbjct: 30  FDENISLIGTGKHELFANLHEFLESFKFDVKRRGKIRIEVQNLHQIEERLDDDHVLAHGT 89

Query: 369 LNWKTWKENIFSVYKSSETHKDTWHLPNGQTL-HVIVTSNPRGGTIWMFENLTVQVDLET 427
           +++    ++    +K        +   NG+ L   +  S P             Q+D E 
Sbjct: 90  VDFVGLFKDGSICFKMETRFTIIYKWTNGKWLVQHLHQSIPD----------LEQMDGEE 139

Query: 428 ---KYNTLVKVQGETIDHLSEGVAVFGP----DGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                   VK   +    L     +         R++      +     ++N +     I
Sbjct: 140 FPVTLGKQVKKTRQAFHALGTAYYLILRLNLKTKRVEFVKKNRKINIDIKDNNIEWNLQI 199

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
             I    +  + +          + +    ++S+    +L   S     +IP    Q   
Sbjct: 200 ETIERIIAEPFVQKCIDFFDIQTMAARLHNKESMSSEFKLKEGSWFLSMVIP----QNYD 255

Query: 541 TFVNVTDSVRAERALTEKNEA--------------LRKADEIKNSFVQHVSYELRSPLTN 586
              NVT  + A R +T++                    A++ K+SF+ ++S+++R+P+  
Sbjct: 256 KNGNVTSVLIANRDVTDEKMRELRQEEELREAKLKAECANKAKSSFLFNMSHDIRTPMNA 315

Query: 587 IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIV 646
           IIG+ +L   S+      K  +Y+E I      LL+++ ++LDLA ++   +++ Y+   
Sbjct: 316 IIGYAEL--ASRHLQETEKLGRYLEKIQICGKELLSMLGNVLDLARIENNKVEMEYTVSN 373

Query: 647 LNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
           +++           +    N  + +           D   L ++   I+SNA+ +++ G 
Sbjct: 374 VHECFENCIIMFQQQAESKNQTLSLTEQIMYPYVYMDAPHLSEVCLNIISNAIKYTNTGG 433

Query: 707 TV---ILKAARDNGDF---IFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGL 758
            +   +++ + +  D+   I ++ +NG  + E+  K +F  F    +       G G+G+
Sbjct: 434 AISCNVVQKSCEKEDWCNMIITITDNGIGMSEEFQKRIFEIFERERNTTLSHIDGSGIGM 493

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
            I +  + L  G + + S     +T    IP ++
Sbjct: 494 GITKKLVELMDGTIEVESKQGEGSTFTVTIPCRK 527


>gi|258591885|emb|CBE68188.1| putative Sensor protein yycG [NC10 bacterium 'Dutch sediment']
          Length = 610

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 89/422 (21%), Positives = 162/422 (38%), Gaps = 40/422 (9%)

Query: 385 SETHKDTWHLPNGQTLH-VIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQ---GETI 440
           +E       + +G     +   S+   G +    NL     LE +   L + +      +
Sbjct: 203 AEMTAVARRMADGDFSRKISAVSSDEIGQLGNALNLMA-KRLEDRLAALEEERTKGAAIL 261

Query: 441 DHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLF 500
           D + EGV       RI   N +   L+            I ++ A    +       ++ 
Sbjct: 262 DSMVEGVLAVDGMNRILFINASACRLFN-----------ISSVVAEGRPFLEVIRNKEML 310

Query: 501 AAIITSFDDE-RKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKN 559
             +  +  +      +  +      VL+    PL  ++     + V   V   R L    
Sbjct: 311 DLLNQTLREGVFAPRELHIFTPVQRVLQVHASPLKGSERSAGALWVMHDVTELRRL---- 366

Query: 560 EALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTI 619
                 +  +  FV +VS+ELR+PLT++ G+ + L    L         ++E I   +  
Sbjct: 367 ------EAARTEFVANVSHELRTPLTSVRGYLETLLEGALED-REHARPFLEVIHKHTER 419

Query: 620 LLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS 679
           L  L++D+LDL+ ++ G + L+    VL ++++ V      +  +  I ++      L  
Sbjct: 420 LGRLLDDLLDLSNLELGKVTLHRQPTVLAEVVHNVMAIYGPQATKQKIELRTELPDDLPR 479

Query: 680 FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN----------GDFIFSVKNNGSS 729
            +ADR R+ Q+   +L N   F+ KG  V + A+  +               +V++ G  
Sbjct: 480 VMADRDRIAQVLINLLDNGFKFTQKGGAVRVSASLAHPTPDTLHPIVDFVEVAVQDTGIG 539

Query: 730 IPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           IP      +  RF        R   G GLGL+IV+  +  HGG + I S     TT+   
Sbjct: 540 IPSQDLPRITERFYRVDRARSREMGGTGLGLAIVKHLVKAHGGELLIESELNKGTTVRFT 599

Query: 788 IP 789
           +P
Sbjct: 600 LP 601



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 27/165 (16%)

Query: 297 KEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELL 356
           +   + ++ T    IL ++   +   D    + F N S   L+ I        P     L
Sbjct: 246 RLAALEEERTKGAAILDSMVEGVLAVDGMNRILFINASACRLFNISSVVAEGRP----FL 301

Query: 357 EFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRG----GT 412
           E +R+   L   L  +T +E +F+     E H  T   P  + L V  +         G 
Sbjct: 302 EVIRNKEML--DLLNQTLREGVFA---PRELHIFT---PVQRVLQVHASPLKGSERSAGA 353

Query: 413 IWMFENLTVQVDLET-----------KYNTLVKVQGETIDHLSEG 446
           +W+  ++T    LE            +  T +      ++ L EG
Sbjct: 354 LWVMHDVTELRRLEAARTEFVANVSHELRTPLTSVRGYLETLLEG 398


>gi|229131594|ref|ZP_04260476.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196]
 gi|228651820|gb|EEL07775.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196]
          Length = 421

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 5/252 (1%)

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
           T     +     +++      L      ++ F+  V++ELR+PLT + G+ D+    K  
Sbjct: 172 TTTRNDEIGELAQSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIAL--KEN 229

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
           +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + I  
Sbjct: 230 TPPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEKHNFFIQVQEVHLHTFLTRITEKINV 289

Query: 661 KMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFI 720
              E  I++       L     D QR  Q+ + IL+NA   S + S + +    ++    
Sbjct: 290 MYGEKQIKVVFTCPSSLL-VKLDEQRFEQVMANILNNAYRHSKEHSHINISVTEEHKHIS 348

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSD 778
             +K+ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S  
Sbjct: 349 IKIKDKGEGIPPEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTSEI 408

Query: 779 EGVTTINCRIPS 790
           +  +     +PS
Sbjct: 409 DHGSCFTISLPS 420


>gi|170025666|ref|YP_001722171.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis
           YPIII]
 gi|169752200|gb|ACA69718.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
          Length = 942

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYI 613
            L    +  ++A  IK+ F+ ++S+ELR+PL  +IGFT   + +   SL   Q+ Y++ I
Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFT---RQTLKTSLTPTQTDYLQTI 333

Query: 614 SASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS 673
             S+  LL ++ND+LD + ++A  + L +    L   L+EV   +A   HE  + + +  
Sbjct: 334 QRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLHI 393

Query: 674 DGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGS----TVILKAARDNGDFIFSVKNNGS 728
           +  +    + D  RL QI + +L NA+ F+ +G+     V+   A      +  + + G 
Sbjct: 394 NNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTGI 453

Query: 729 SIPEDMCKSVFNRFVSNAHRGQ--RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            I E     +F  F            G GLGL I E  +   GG++S  S     +    
Sbjct: 454 GISESQQAQLFQAFRQADASTSLRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSIFRF 513

Query: 787 RI 788
            +
Sbjct: 514 HL 515


>gi|328544444|ref|YP_004304553.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326414186|gb|ADZ71249.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 517

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 135/280 (48%), Gaps = 6/280 (2%)

Query: 515 QGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQ 574
           QG   +L + +L  +I  L  A        + +  +A     E      +A+  K+ F+ 
Sbjct: 211 QGFFLVLGNQLLNSAITML--AYRAEKDHLIAELEQANAVSDESRRRAEEANLAKSRFLA 268

Query: 575 HVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +S+ELR+PL  I+GF++++K   LG + N     Y   I  S   LLNL+N+ILDL+ +
Sbjct: 269 TMSHELRTPLNAILGFSEIMKDEVLGPMANPTYRSYAADIHGSGQHLLNLINEILDLSRI 328

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG  +LN   + L D++ + +  +  +    +I I+   +  L    AD + + Q+   
Sbjct: 329 EAGRYELNEEAVTLIDIVEDCRTMMQIRAKAKDITIRESHEDGLPRLWADERAIRQVILN 388

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIF-SVKNNGSSIPEDMCKSVFNRFVSN--AHRGQ 750
           +LSNA+ F+     V ++     G   F S+++NG  IPED    V   F     A +  
Sbjct: 389 LLSNAVKFTPSSGEVTIRIGAAPGGGQFVSIRDNGPGIPEDEIPIVLQAFGQGAIAIKSA 448

Query: 751 RRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             G GLGLSIV++ +  HGG   + S     T     +PS
Sbjct: 449 EAGTGLGLSIVQALVAQHGGTFELKSRLREGTEAIVTLPS 488


>gi|218662726|ref|ZP_03518656.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli IE4771]
          Length = 570

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 4/237 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASS 617
                +A+  K+ F+  +S+ELR+PL  I+GF++++    +G L N    +Y   I  S 
Sbjct: 197 RRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSG 256

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI I    + +L
Sbjct: 257 QHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQL 316

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            +  AD + + Q+   +LSNA+ F+ +G  + +K      G    S+K+NG  IPE+   
Sbjct: 317 PAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIP 376

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V + F   +   +   +G GLGL IV++ +  H G   + S     T +   +P+K
Sbjct: 377 VVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAK 433


>gi|67923906|ref|ZP_00517363.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67854258|gb|EAM49560.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 374

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 114/254 (44%), Gaps = 7/254 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           +  +   ++ +  +  ++      +L+  +  +   +  +++ELR+PLT + G+ + L  
Sbjct: 123 EERMPDSDIPEWNQLGKSFNIMASSLQDVETRRRELISDMTHELRTPLTIMRGYLEELAN 182

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             +         Y+  +   +  L  L++D+ +L+  +AG + ++   I +  LL  + +
Sbjct: 183 GSIEGSPE---LYLNLV-KETRRLERLIHDLQELSKAEAGYLSISLYPINILPLLTSLVE 238

Query: 657 SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
             A ++ +    IK+    +L   +AD  R  QI   ++ NA+ ++ KG T+ +KA  +N
Sbjct: 239 RFADQIMDYGPTIKLECIQELPPVLADSDRTEQILVNLIGNAIRYTEKG-TITIKAWSEN 297

Query: 717 GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSI 774
                 + + G  I  +    VF RF        R   G G+GL+I    + L GG + +
Sbjct: 298 KQVWVEIIDTGIGIKPEDLPYVFERFWRADKSRSRYSGGTGIGLAITRRLVELQGGKIEV 357

Query: 775 SSSDEGVTTINCRI 788
            S  +  TT    +
Sbjct: 358 ESEVDQGTTFRFNL 371


>gi|163792987|ref|ZP_02186963.1| sensor/response regulator hybrid [alpha proteobacterium BAL199]
 gi|159181633|gb|EDP66145.1| sensor/response regulator hybrid [alpha proteobacterium BAL199]
          Length = 528

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 138/301 (45%), Gaps = 7/301 (2%)

Query: 494 SDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER 553
            +  D    +IT F+   + ++     L   V    +  L + +T           +   
Sbjct: 210 RETNDELGDLITGFNHMLEQIETQHREL--MVYREQLERLVDDRTTQLQDANVRLHQTVA 267

Query: 554 ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEY 612
            L E    L  A+  K+ F+ ++S+ELR+PL  IIGF+D++     G L +++   Y + 
Sbjct: 268 DLQESKSELESANRFKSEFLANMSHELRTPLNAIIGFSDIMVNQLFGKLGDARYEDYAKD 327

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I  S+  L+ ++ DILD   ++ G ++L  +T+ ++ LL +  + I+  +H   I+++  
Sbjct: 328 IHYSANHLIEIIGDILDTTRIEFGKLELQEATVSVDGLLEDALRIISPSIHAQRIKLEQQ 387

Query: 673 S-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
           +          D  R+ QI   +LSNA+ F+  G  + +     +G    ++ + G  I 
Sbjct: 388 ALPLPGPKLRCDPIRVRQILINLLSNAVKFTDPGGAISIGVKIRDG-IEITITDTGIGID 446

Query: 732 EDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           E   + V   F    H    + +G GLGLS+ ++ +  H G +++SS     T +    P
Sbjct: 447 EADLERVVTPFAQVEHAFARKYQGTGLGLSLSKTLMECHQGKLTLSSRLGEGTAVTIYFP 506

Query: 790 S 790
           +
Sbjct: 507 A 507


>gi|156740993|ref|YP_001431122.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232321|gb|ABU57104.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 396

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 128/366 (34%), Gaps = 46/366 (12%)

Query: 444 SEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAI 503
            +G+ +   D R++  N     L             I            +     +    
Sbjct: 55  DDGLVLVDADRRVQYLNAHAEELLNLSRTVSVGQGLIM--------LARDYQVDAMVEEA 106

Query: 504 ITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALR 563
           I S +     LQ    L     L    +PL +              +    L      L 
Sbjct: 107 IASAEPRESILQ---PLGRQRTLRLRAVPLDHG------------TKGALLLVRDVTQLS 151

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + +  +   V +VS+ELR+PL +I    + L++     +     + +  I+     +  L
Sbjct: 152 QLERSRRDLVANVSHELRTPLASIKLLVETLQSDPPAPV---AQRMLSQIAQEVDAITQL 208

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V ++ +L+ +++G + L      L  L+    + I  +M   +IR+       L   + D
Sbjct: 209 VEELHELSQIESGRVALQLVPTPLAPLVAHTIERIRPQMERKSIRVIACLPDDLPPALID 268

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAAR------------------DNGDFIFSVKN 725
             R+ Q+   +L NA  F+  G  V ++A+                        + S+ +
Sbjct: 269 GNRVGQVLLNLLHNASKFTPDGGQVAIEASVIMVGDGSPLPPGIPSSHLPGQWLLVSIAD 328

Query: 726 NGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           NG  IP      +F RF        R   G GLGL+I +  +  HGG +  +S +   + 
Sbjct: 329 NGIGIPARDLARIFERFYKVDRARTRNAGGTGLGLAIAKHLVEGHGGRIWATSVEGEGSI 388

Query: 784 INCRIP 789
               +P
Sbjct: 389 FYLTLP 394


>gi|301162296|emb|CBW21841.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 792

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 168/388 (43%), Gaps = 16/388 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           ++ F  ++V +    + + + +   + ++   + + +    G+I L N     +   +  
Sbjct: 397 VFAFIFISVSLLHTRRRSLIERKNLKILEEAHKRLTLSADGGQISLWNMQGSDIEFDDNY 456

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDL----FAAIITSFDDERKSLQGTL-ELLSDSVLE 527
               G   R    T    Y   D   L    + A+  S   E + ++    E       E
Sbjct: 457 ARLTGVEKRKFKRTDFLEYVHPDDSQLLSSFYEALCKSPGVEIQRVRFRFDEKKGYQWYE 516

Query: 528 YSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                L + +  +       N+ +SV  E  L    +   KA E+K SF+ ++S+E+R+P
Sbjct: 517 LRCRSLKDIKGEMMLAGIMQNIQESVEREHQLIVAKQMAEKA-ELKQSFLNNMSHEIRTP 575

Query: 584 LTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           L  I+GFT++L       ++  +++  +E I+ ++ +LL L+ND+L+++ +D+G +  + 
Sbjct: 576 LNAIVGFTNVLLGEGSEEIDPDEKASMLEIINHNNELLLKLINDVLEISRLDSGSLDFDM 635

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
               + D++ E+ ++    +   +++ ++  D  +      DR R  Q+ S  L+NA  F
Sbjct: 636 KEWNMTDIVKEIYKTYQPLIRS-SLQFRLELDDTVPVPVHTDRLRFAQVISNFLNNANKF 694

Query: 702 SSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           +  G   +  K  + + +    V+++G  I E     +F RF       Q  G GLGL+I
Sbjct: 695 TQNGYIALGCKVDKKHREVRIYVEDSGKGIDEKELMMIFERFYKTDEFEQ--GSGLGLAI 752

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  I    G + + S     +     +
Sbjct: 753 SKVIIERLSGRIKVHSEKGKGSCFTVIL 780


>gi|294506830|ref|YP_003570888.1| Two component system histidine kinase, [Salinibacter ruber M8]
 gi|294343158|emb|CBH23936.1| Two component system histidine kinase, putative [Salinibacter ruber
            M8]
          Length = 1052

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 101/672 (15%), Positives = 237/672 (35%), Gaps = 71/672 (10%)

Query: 176  SELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNT--ETEGIVF 233
             ++ +   K + L +  S  +   D +        + G   + N ++      +  G + 
Sbjct: 391  RDMTDRRQKERALRHRSSAMEAASDGIA----ILGKEGTYRYVNQAHASIYGYDAPGALV 446

Query: 234  QKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYK---IVRVLNSFGEAG 290
             ++     +  +++  +    ++ +E       +     +  S+     + VL       
Sbjct: 447  GRSWTACYEEAEQQRLEAEAMAALVETGDWRGEARGVREDGSSFPQELALTVLKDESIVC 506

Query: 291  IAIDVSKEITVNDQL----THTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFL 346
            +  D++       +L     +  +IL      +A+F  +   +F N+  V     D    
Sbjct: 507  VVRDITARKEDERELRSTKQYYEQILEKAVKDLAVFKPDGRYEFVNKQSVA----DPEMR 562

Query: 347  ATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNG-----QTLH 401
                 +   LE+ R  +   E    +       +  + +  +++    P+G     +T  
Sbjct: 563  EWIIGHTN-LEYCRKRDLDLELGRRRDRAIRTAADEQRTTQYEERMETPDGIRHFLRTHK 621

Query: 402  VIVTSNPRGGTIWMF-ENLTVQVDLETK-----------YNTLVKVQ-----GETIDHLS 444
             I         +  F  ++T +   E             Y    +V       E  D + 
Sbjct: 622  PITDVEGEVTHVAAFGIDITERKKREQALHQRQDKIEALYRATRRVLTAEGPNEVSDRIH 681

Query: 445  EGV-AVFG--------PDG------RIKLSNPAFRSLWKTE-------ENRLSPGTHIRN 482
            E + ++F          DG      R  ++ P+  S               L  G  +  
Sbjct: 682  ELLGSIFDYPLRNTGFVDGGTIHPERTTIAGPSVPSPDPQPKSGDSLSARALQTGDTV-- 739

Query: 483  IAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQ---TM 539
            I        N+ +   L +A      D    + G  E          ++ + ++     +
Sbjct: 740  IVEDLGGLDNDIEYGRLRSAAAVPIGDRGVVVVGRTEGGDFEPFNLRLLEILSSYAALVL 799

Query: 540  LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
                       A+            A   K++ + ++S+E+R+PLT+IIGF D +     
Sbjct: 800  GRLDREGALREAKEEAETARAEAEAASRAKSAMLANMSHEIRTPLTSIIGFADAIGEETQ 859

Query: 600  GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
             +  +    +   I  S   LLN ++ +L+L+ ++AG M+L  + + +      + + + 
Sbjct: 860  DAEGAALR-FANLIGKSGRRLLNTLDGVLNLSKLEAGQMQLESTAVDVAAQAEVIAKELR 918

Query: 660  TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
             K     +R++V +        AD   +  +   ++SNA+ ++  G  V ++ A +    
Sbjct: 919  PKAEGKGLRLRVDAGEAPVWAEADEGGVQIVLQNLVSNAIKYTDAGE-VRIRVAHEEEQA 977

Query: 720  IFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVSISSS 777
            + ++++ G  +  +  K++F+ F   +     +  G GLGL++ +  ++  GG + + + 
Sbjct: 978  VLNIEDTGIGMDPEGVKTLFDPFRQESEGLAREYEGTGLGLTVTKKAVDQMGGSIDVETE 1037

Query: 778  DEGVTTINCRIP 789
                +    R P
Sbjct: 1038 KGEGSHFTVRFP 1049



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/475 (13%), Positives = 160/475 (33%), Gaps = 44/475 (9%)

Query: 130 ATEKLRKEGQSFDLVAETQNDCAIKIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLS 189
           A E +R       +  +T +   + +E   +      R +++ GI+ ++ E   + + + 
Sbjct: 229 AEETVRHFEDGSSIYVQTDDGENVPVEISAATVEVGGRQIAV-GIFRDITEQEKRRRTIE 287

Query: 190 NHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIK 249
           + +   +   D +  L     + G  ++ + ++      E           R    +E+ 
Sbjct: 288 SSLRAIEEAADGIAVL-----EDGRYVYVDETHADMYGFESAEVLLGASWRRLYADDEVA 342

Query: 250 K---RMISSSALEKNFCETVS-TLEHGNNKSYKIVRVLNSFGE-AGIAIDVSKEITVNDQ 304
           +    +  +   E ++   V+ +   G      +   + S G       D++        
Sbjct: 343 RLEEEVFPTLEEEGHWQGEVTGSRPDGTTFPAALSLTVVSEGRLVCTVRDMTDRRQKERA 402

Query: 305 LTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
           L H    +   +  IAI  +    ++ N++   ++  D        S     E       
Sbjct: 403 LRHRSSAMEAASDGIAILGKEGTYRYVNQAHASIYGYDAPGALVGRSWTACYEEAEQQRL 462

Query: 365 LPEQ----LNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLT 420
             E     +    W+     V +   +      L          T       + +  ++T
Sbjct: 463 EAEAMAALVETGDWRGEARGVREDGSSFPQELAL----------TVLKDESIVCVVRDIT 512

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            + + E +  +  +   + ++   + +AVF PDGR +  N    +  +  E  +      
Sbjct: 513 ARKEDERELRSTKQYYEQILEKAVKDLAVFKPDGRYEFVNKQSVADPEMREWIIGH---- 568

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEY--SIIPLPNAQT 538
            N+     R  +   G     AI T+ D++R +         D +  +  +  P+ + + 
Sbjct: 569 TNLEYCRKRDLDLELGRRRDRAIRTAADEQRTTQYEERMETPDGIRHFLRTHKPITDVEG 628

Query: 539 MLTF-----VNVTDSVRAERALTEKNEALRKADEIKNSFVQH-----VS---YEL 580
            +T      +++T+  + E+AL ++ + +          +       VS   +EL
Sbjct: 629 EVTHVAAFGIDITERKKREQALHQRQDKIEALYRATRRVLTAEGPNEVSDRIHEL 683


>gi|253563388|ref|ZP_04840845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
 gi|251947164|gb|EES87446.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
          Length = 792

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 168/388 (43%), Gaps = 16/388 (4%)

Query: 413 IWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEEN 472
           ++ F  ++V +    + + + +   + ++   + + +    G+I L N     +   +  
Sbjct: 397 VFAFIFISVSLLHTRRRSLIERKNLKILEEAHKRLTLSADGGQISLWNMQGSDIEFDDNY 456

Query: 473 RLSPGTHIRNIAATCSRYYNESDGWDL----FAAIITSFDDERKSLQGTL-ELLSDSVLE 527
               G   R    T    Y   D   L    + A+  S   E + ++    E       E
Sbjct: 457 ARLTGVEKRKFKRTDFLEYVHPDDSQLLSSFYEALCKSPGVEIQRVRFRFDEKKGYQWYE 516

Query: 528 YSIIPLPNAQTMLT----FVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
                L + +  +       N+ +SV  E  L    +   KA E+K SF+ ++S+E+R+P
Sbjct: 517 LRCRSLKDIKGEMMLAGIMQNIQESVEREHQLIVAKQMAEKA-ELKQSFLNNMSHEIRTP 575

Query: 584 LTNIIGFTDLLKTSKLGSLNS-KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           L  I+GFT++L       ++  +++  +E I+ ++ +LL L+ND+L+++ +D+G +  + 
Sbjct: 576 LNAIVGFTNVLLGEGSEEIDPDEKASMLEIINHNNELLLKLINDVLEISRLDSGSLDFDM 635

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDF 701
               + D++ E+ ++    +   +++ ++  D  +      DR R  Q+ S  L+NA  F
Sbjct: 636 KEWNMTDIVKEIYKTYQPLIRS-SLQFRLELDDTVPVPVHTDRLRFAQVISNFLNNANKF 694

Query: 702 SSKGSTVI-LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSI 760
           +  G   +  K  + + +    V+++G  I E     +F RF       Q  G GLGL+I
Sbjct: 695 TQNGYIALGCKVDKKHREVRIYVEDSGKGIDEKELMMIFERFYKTDEFEQ--GSGLGLAI 752

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            +  I    G + + S     +     +
Sbjct: 753 SKVIIERLSGRIKVHSEKGKGSCFTVIL 780


>gi|157964296|ref|YP_001499120.1| histidine kinase sensor protein [Rickettsia massiliae MTU5]
 gi|157844072|gb|ABV84573.1| Histidine kinase sensor protein [Rickettsia massiliae MTU5]
          Length = 498

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 115/256 (44%), Gaps = 9/256 (3%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 239 TNYARQIIEEQLETNRNLKARIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSE 298

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L++     
Sbjct: 299 RDA---EKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSMDLDLNKLISSSLIL 355

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           +  +  +  + +      +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 356 VKPRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDEL 415

Query: 717 -GDFIFSVKNNGSSIPEDMCKS---VFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHV 772
                  V + G  I E        VF + + +    +  G GLGL + +  + L  G  
Sbjct: 416 AKLVYIKVIDTGIGIEEKDIPKTLSVFGQ-IDSELSRKYEGTGLGLPLTKKLVELMNGKF 474

Query: 773 SISSSDEGVTTINCRI 788
            + S     TTI    
Sbjct: 475 DLQSKINEGTTITITF 490


>gi|71909298|ref|YP_286885.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71848919|gb|AAZ48415.1| signal transduction histidine kinase [Dechloromonas aromatica RCB]
          Length = 620

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 12/247 (4%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
            ++  L +  E    A+  K+ F+ ++S+ELR+P+T IIG + L+  ++   L+ +Q  +
Sbjct: 227 ESKAKLRQAKEEAESANAAKSQFLANMSHELRTPMTGIIGMSFLMMRTE---LDEQQRDF 283

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            + I  S+  LL ++NDILDL+ ++A  ++L ++      ++ EV   I+      NI +
Sbjct: 284 ADTIQRSANALLIIINDILDLSAIEAEKLRLAHANYSARKVIGEVLALISPSADAKNISL 343

Query: 670 KVISDGKLGSF-VADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD-----NGDFIFSV 723
                  L    V D  RL Q+   +L NA+ F+ +GS V L+ A            F V
Sbjct: 344 ISQIADDLPEILVGDAIRLRQVLLNLLGNAIKFTEQGS-VTLEVAHQPTDDGRQRLNFVV 402

Query: 724 KNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEGV 781
           ++ G  +   +  ++F  F        RR  G GLGLSI    I L  G +S  S  +  
Sbjct: 403 RDTGIGMTPGVVNALFTPFFQADLSNTRRFGGTGLGLSISRRLIELMHGEISAESEPDVG 462

Query: 782 TTINCRI 788
           +T    I
Sbjct: 463 STFRFHI 469


>gi|229171431|ref|ZP_04299016.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3]
 gi|228612135|gb|EEK69372.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3]
          Length = 421

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 165/434 (38%), Gaps = 33/434 (7%)

Query: 375 KENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            E + ++ K   +H+D      + QT+  +        T  +  N     ++  K N + 
Sbjct: 2   NEEMTALLKRGNSHRDVLEKYFDKQTISHVALMESEAETTVVITN--ANKEVLAKSNEIN 59

Query: 434 KVQGETIDHL-----SEGVAV---FGPDGRIKLSNPAFRSLWKTEENRLSPGTH-IRNIA 484
               + I+ +      +G  +   +     I   +P   +        +  GT  I  + 
Sbjct: 60  TTIKKHIEKMQTRTDHDGAIIENHWKTSNYICTVSPIVVAGKTEGYVYMFLGTESIEEMV 119

Query: 485 ATCSRYYNESDGWDLFAAIITSFDDERK------SLQGTLELLSDSVLEYSIIPLPNAQT 538
              +R +  +        +IT F   R        ++   E +S   L  S+        
Sbjct: 120 NGLTRQFIIAGVITFLLTVITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSL-------- 171

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
             T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+     
Sbjct: 172 --TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKEN 229

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
                 ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + + +
Sbjct: 230 TSP--EQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVYLHTFLTRIAEKV 287

Query: 659 ATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD 718
                E  I++       L     D QR  Q+   IL+NA   S K S + +    ++  
Sbjct: 288 NAMYKERYIKVSFSCPPTLL-INLDEQRFEQVVVNILNNAYRHSQKHSHINISVTEEHKR 346

Query: 719 FIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISS 776
              ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++++S
Sbjct: 347 ISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGNITVTS 406

Query: 777 SDEGVTTINCRIPS 790
             +  +     +PS
Sbjct: 407 EVDHGSCFIISLPS 420


>gi|222149564|ref|YP_002550521.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221736546|gb|ACM37509.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 1125

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + + AL    E    A+  K+ +V  +S+ELR+PL  ++G+  LL+     ++ + + 
Sbjct: 655 HRKTDAALQTAKETAEAANRAKSRYVVGLSHELRTPLNAVMGYAQLLEQD--DTIPAPRQ 712

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  I  S+  L  L++ +LD++ ++AG +++  + + ++D L+++   +  +     +
Sbjct: 713 SAIRVIRRSADHLSGLIDGLLDISKIEAGRLQVFSAELNIHDFLDQIIDMLRPQAEAKGL 772

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
                    L  +V AD +RL QI   +LSNA+ F+  G TV    A  +    F+V + 
Sbjct: 773 TFTHTRAKNLPQYVRADEKRLRQILVNLLSNAIKFTDAG-TVTFDIAYRSQVASFTVTDT 831

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I +     ++  F        R   G+GLGL+I +   N  GG +++ S  +  TT 
Sbjct: 832 GRGIAQKDLSRIYEPFQRGEADTIRPMPGLGLGLTITKLLTNTLGGEIAVESETDKGTTF 891

Query: 785 NCRI 788
             R+
Sbjct: 892 RVRL 895


>gi|167764826|ref|ZP_02436947.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183]
 gi|167697495|gb|EDS14074.1| hypothetical protein BACSTE_03217 [Bacteroides stercoris ATCC 43183]
          Length = 1329

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 120/253 (47%), Gaps = 8/253 (3%)

Query: 537  QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
            +      ++   +R ER   EK E   +  ++K  F  ++S+ELR+PLT II     L +
Sbjct: 785  RFFWLRKSMQTEIRMERLDREKKE---EISQMKIRFYVNISHELRTPLTLIISPLQELLS 841

Query: 597  SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
            S  G    ++  Y++    ++  LL+LVN ++D    + GI +L  S       +     
Sbjct: 842  SVTGHWEREKLLYIQ---RNARRLLHLVNQLMDYRRAELGIFELRPSYANAYKRVLNSFL 898

Query: 657  SIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN 716
            +  +   + +I     S+ +    + D   L  I + +LSNA  ++ +G  + +K  R++
Sbjct: 899  NYESLAKKKDIDYNFYSELQDEDVLFDGTYLDLIINNLLSNAFKYTEEGERIYVKLYRED 958

Query: 717  GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISS 776
             + +  V + G  IP+D  + +F RF    +     G G+GLS+V+  + LH G +++ S
Sbjct: 959  KNVVLQVADTGVGIPKDKQRKIFERFYQVENV--HEGSGIGLSLVQRLVELHHGQITLVS 1016

Query: 777  SDEGVTTINCRIP 789
                 +T +  IP
Sbjct: 1017 EVGKGSTFSIYIP 1029


>gi|149912975|ref|ZP_01901509.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149813381|gb|EDM73207.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 678

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 155/378 (41%), Gaps = 22/378 (5%)

Query: 424 DLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNI 483
           D   +     +     +D  ++ V +   DG  +  +P   ++   +++ L  G H  ++
Sbjct: 22  DTREQLRESEQKFRSFLDTANDVVYILSQDGTFQFLSPRILNVLGYQQDELV-GQHFSSV 80

Query: 484 AATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD--SVLEYSIIPLPNAQ---- 537
                 + ++      F   +         L+  +   +      + +  PL +AQ    
Sbjct: 81  I-----HPDDLPVCQSFFERVVINQQAEAGLEYRVRHANGTWRWHDTNAAPLFDAQQDLQ 135

Query: 538 -TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             +    ++ D   A  AL    E    A   ++ F+  +++E+R+PL  ++G  DL+  
Sbjct: 136 GMLGIGRDIQDRKLATNALQNALEKAEAATLARSRFISTMNHEIRTPLGGMLGILDLMA- 194

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
             L   + ++ + + Y   +   L  +V+D+LD + ++AG++      + ++D+++ V+ 
Sbjct: 195 --LDETDPEKKELLNYAKTAGKSLNRIVDDVLDFSKMEAGVLMFEQEPVSISDVIDTVRV 252

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
              +  +     I V     + +F   D  RL Q+ S ++SNA+ +S  G  +I   A +
Sbjct: 253 LTESASNAQGREIVVEIGNSVPNFFAGDANRLRQLISNLVSNAVRYSQDGPIIIRANACE 312

Query: 716 NG---DFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGG 770
            G        V++ G  I +    ++F  F    +      +G GLGL+I +  +    G
Sbjct: 313 QGATWRLRVEVEDFGVGISDTDRPNLFRDFSQIDNPLSAAAKGTGLGLAICKRIVEKLHG 372

Query: 771 HVSISSSDEGVTTINCRI 788
            + + S     TT    +
Sbjct: 373 DIGVDSQLGEGTTFWFEL 390


>gi|83310972|ref|YP_421236.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945813|dbj|BAE50677.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1036

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 115/659 (17%), Positives = 218/659 (33%), Gaps = 80/659 (12%)

Query: 164 AFLR--ILSLDGIYSELAETTLKCKKL-SNHISVFKVLFDSLDFLVWHRDQAGDILWANI 220
           A +R     LD   ++LAE+  + + +    +  F  +                ++  N 
Sbjct: 269 AVVRAPYRRLDRSRAQLAESEARQRAIIQGSMDAFVAI-----------GADRTVVAFNP 317

Query: 221 SYKKNTETEGIVFQKAIGESRKL---FKEEIKKRMISSSALEKNFCETVSTLEHGNNKSY 277
           + ++              +   L    +  +   +    A      +       G     
Sbjct: 318 AAEEMLAVPAAQVADRRLDDTPLPAPLQGRLMDGLAPGLAAAGERRDIAGQRGDGRPLLA 377

Query: 278 KIVRVLNSFGEAGIAI----DVSK---EITVNDQLTHTYEILHNLTV---AIAIFDQNRY 327
           +        G+  +++    DV++         + T     LH+L     A  + +    
Sbjct: 378 EANLFAVGIGDERLSVISLRDVTELRKAEAQERRRTAEIATLHHLAQTLGATVVLEDLAT 437

Query: 328 LQFHNRSFVELWEIDLAFLATNPSNDE-LLEFLRSANKLPEQLNWKTWKENIFS------ 380
           +    +  + +   D+A L    + +  +L  +      P      T  +          
Sbjct: 438 ITV--QETLPVVGADVAMLFLRQAGEAPVLRAIHWRGGEPGPSPACTEADQCLCHRAFSI 495

Query: 381 ---VYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIW---MFENLTVQVDLETKYNTLVK 434
              +Y ++   +D           V+     RG  ++    F  +    +L+ + + +  
Sbjct: 496 GETIYSNALADEDGMRCAESGLGTVVALPLGRGDQVFGVLAFGTIATSGELDRRMSFMET 555

Query: 435 VQGETIDHLSEGVAVFGPDGR---IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYY 491
           +  E    L   +       R   +   N A                     A    R +
Sbjct: 556 LANEVSGFLQNAILYAELQSRGEDLTRINAALA-------------------AEVAERKH 596

Query: 492 NESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRA 551
            E+        +     +   SLQ  +        +Y+   L NA T        +  R 
Sbjct: 597 AEAQLTAARDQLEARVAERTASLQQEINER-----QYAEESLRNALT--------NLERH 643

Query: 552 ERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVE 611
           ++ L    EA   A++ K+ F+  +S+ELR+PL  I+GF  LL+TS+   L  KQ    +
Sbjct: 644 QQELRLAKEAADSANQAKSDFLSSMSHELRTPLNAILGFAQLLETSRSSPLTDKQRGQAQ 703

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I      LL L+N++LDLA ++AG + L+   +    L +EV              +  
Sbjct: 704 CIIKGGQHLLQLINEVLDLARIEAGNLALSLEEVEARPLFDEVMDLTRAYAGGRVAMVDA 763

Query: 672 ISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD-FIFSVKNNGSS 729
              G        D  R  Q+   + SNA+ + + G TV L       D   F V + G  
Sbjct: 764 SVPGATASHLRVDYTRFKQVLLNLTSNAVKYGASGGTVTLTMEPGAADSVRFVVTDRGPG 823

Query: 730 IPEDMCKSVFNRFVS-NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCR 787
           I  +    +F  F    A   +  G G+GL+I +  +   GG +   ++    TT    
Sbjct: 824 IAPEKQALLFRPFNRLGAEATEIEGTGIGLTISKQLVEAMGGRIGFETATGRGTTFWVE 882


>gi|109899844|ref|YP_663099.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c]
 gi|109702125|gb|ABG42045.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c]
          Length = 1498

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 151/372 (40%), Gaps = 32/372 (8%)

Query: 431  TLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRY 490
             L   +  T  +L  G  V     +++ SN       +  E  +S            S Y
Sbjct: 742  ELEHRRLATFTNLPPGEYVL----KVQASNNQGLWNTQGVELPISVLPPPWKTLWAYSLY 797

Query: 491  YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVR 550
               +    +   +I  +  +R+     L  L + V E         +T       +   +
Sbjct: 798  CLIALL--IILNVIWRYRRKRQKELQQLIELEEKVAE---------RTKELSHANSQLEQ 846

Query: 551  AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
            A     +      +A + K+ F+  +S+E+R+P+  ++G T++L +S    L  KQ  + 
Sbjct: 847  AVVETEKARRLAEQASKEKSDFLAIMSHEIRTPMNGVLGMTEVLLSS---DLKPKQQHFA 903

Query: 611  EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
            + +  S  +LL+L+N+ILD + ++AG   L    + L  L+ EV    +   +   + I 
Sbjct: 904  QLVYRSGRLLLDLLNNILDFSKLEAGKATLESVPVDLEALIEEVCDLFSEAAYNKGLNIN 963

Query: 671  -VISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGD-------- 718
             ++S   L     D  RL QI + + SNA+ F+ +G     +   A  D           
Sbjct: 964  AILSPEPLPQVYGDPARLRQIIANLTSNAIKFTERGEVNVSIRRVACHDTEHEGNNKYSG 1023

Query: 719  FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISS 776
            F+F V++ G  +  D  + VF  F        R   G GLGL+I +    L GG + + S
Sbjct: 1024 FVFCVQDTGIGMAPDRQQKVFEMFTQADASTTRKYGGTGLGLAICKQLTVLMGGQIGVQS 1083

Query: 777  SDEGVTTINCRI 788
            +    +  + +I
Sbjct: 1084 NIGEGSRFSVKI 1095


>gi|256828314|ref|YP_003157042.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577490|gb|ACU88626.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 955

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 17/247 (6%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL-LKTSKLGSLNSKQSQYVE 611
             L+ + +A     + ++SF+  +S+E+R+P+T ++GF +L L     G L     QY+ 
Sbjct: 414 ETLSAQRQAAEAMAQTRSSFLASMSHEIRTPMTAVLGFLNLSLHLRAQGQL----RQYLL 469

Query: 612 YISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKV 671
            I+A++  L+ ++NDILDLA ++AG ++L      +  LL +    + +   EN   + V
Sbjct: 470 KINAAANHLMGIINDILDLAKIEAGKVELEAKPFEVETLLQDTADLLVSGAFENGNELVV 529

Query: 672 ISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKA--------ARDNGDFIFS 722
                L      D  RL Q+   + SNA+ F+  G TV L            D     F 
Sbjct: 530 SVQPGLPRRVTGDSLRLKQVLLNLSSNAVKFTH-GGTVRLAVHAAADATPVHDAVTLRFE 588

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I   +   +F  F        R   G GLGLSI    + + GG +++ S    
Sbjct: 589 VSDTGIGIDPAVLPRLFTSFEQADAATARVYGGTGLGLSISRRLVQIMGGDITVRSRPGE 648

Query: 781 VTTINCR 787
            +     
Sbjct: 649 GSIFEFT 655


>gi|150389091|ref|YP_001319140.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149948953|gb|ABR47481.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 516

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 161/400 (40%), Gaps = 28/400 (7%)

Query: 414 WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENR 473
            +++N+     L+ +  +        +++ ++G   +       L+N     L K + + 
Sbjct: 90  LIYKNIKRVRTLQEEVLSYGDRYKLVLNNTTDGFWDYN-----LLTNEVVLPL-KWKNSL 143

Query: 474 LSPGTHIRNIAATCSRYYNESDG-------WDLFAAIITSFDDERKSL--QGTLELLSDS 524
                 I N       + +  D        +D     I  ++ E + +   G +  + D 
Sbjct: 144 GYEDDEIPNTVDAWKNFIHPEDFNWVTQTLYDYINGKIPRYNIEYRMIKRDGGIIWIQDK 203

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAER-------ALTEKNEALRKADEIKNSFVQHVS 577
                       Q   T  ++T    +E           +      + ++++  F  ++S
Sbjct: 204 GQAIWGADGKAIQICGTHTDITFRKESEEIKSKIMDEKQQLLVRALEQEKLQAEFFSNIS 263

Query: 578 YELRSPLTNIIGFTDLLK---TSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATV 633
           +E ++PL  I+G   L++    S L  L  +Q ++ +  +  +   LL L+N+++D+  +
Sbjct: 264 HEFKTPLNVILGTVQLVEHYNRSNLSELEPRQLNKCIHIMKQNCYRLLRLINNLIDITKL 323

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           D     + Y    +  +L E+ QS         I I   +D +      D   L +I   
Sbjct: 324 DFDSFSIKYKNYNVIHILEEITQSTVALAEIKGISITFDTDVEEKIIACDINILERIMLN 383

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQR 751
           ++SNA+ +S  GS + +         + SVK+ G  IPE+   ++F+RFV        + 
Sbjct: 384 LISNAIKYSEVGSDINVMVCGQEESLLISVKDTGMGIPENQLSAIFDRFVQIDDSLPKKT 443

Query: 752 RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            G G+GLS+V+ F+    G +S+ S  +  +    ++P +
Sbjct: 444 EGSGIGLSLVKEFVEKLNGEISVKSKVDYGSEFVIKLPVE 483


>gi|163847987|ref|YP_001636031.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525869|ref|YP_002570340.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163669276|gb|ABY35642.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449748|gb|ACM54014.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 379

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 7/247 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  R         EAL +A++ + + +  V++ELR+PL  I G+ + +    + +  +  
Sbjct: 132 ELTRLAAQFNMMAEALERAEQRRVALIGDVAHELRTPLATIAGYVEGILDGVVETDEATW 191

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           +  +         L  L +D+  L+ V++  + L  + +    L+      +  +    N
Sbjct: 192 ALVL----DEVNRLRRLTDDLQQLSRVESRQITLAPTPVDPAHLIEAAVTRLTPQFTAKN 247

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           I + V  +  L    AD  R+LQ+   +L NA+ ++  G  V++ A   +    F V+++
Sbjct: 248 IELHVNIEQHLPPVWADSDRILQVLINLLGNALQYTPGGGRVVIGAEHASEAIRFWVQDS 307

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEG-VTT 783
           G  I  +    +F RF        R   G G+GL+I +  + +HGG +  +S+  G   T
Sbjct: 308 GIGIAAEHLPHLFERFYRVDKSRTRATGGAGIGLTICKGLVEMHGGQIWATSAGPGCGAT 367

Query: 784 INCRIPS 790
               +P 
Sbjct: 368 FYFTLPL 374


>gi|218682383|ref|ZP_03529984.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 894]
          Length = 468

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 4/237 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASS 617
                +A+  K+ F+  +S+ELR+PL  I+GF++++    +G L N    +Y   I  S 
Sbjct: 209 RRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSG 268

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI I    + +L
Sbjct: 269 QHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQL 328

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            +  AD + + Q+   +LSNA+ F+ +G  + +K      G    S+K+NG  IPE+   
Sbjct: 329 PAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIP 388

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V + F   +   +   +G GLGL IV++ +  H G   + S     T +   +P+K
Sbjct: 389 IVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAK 445


>gi|301301239|ref|ZP_07207394.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851115|gb|EFK78844.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 487

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 125/249 (50%), Gaps = 7/249 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           D     ++L E NE +++ +E +  F    ++E+R+PLT I G  + L    +   + ++
Sbjct: 243 DFNSMVQSLRESNEEIKRQEERRRQFFADAAHEMRTPLTTINGLLEGLAYDAIPEESKEK 302

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           S  +E +   +  L+ LVN+ LD   + +G ++L+ +   +  +LN + + +  K  +  
Sbjct: 303 S--IELMRNETKRLIRLVNENLDYEKIRSGQIELSKTEFDVVQVLNNIIKQLRNKAEQVG 360

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
            + +V +  KL    AD  RL+QI   I  NA+ F+ +   + + A + N + I  + +N
Sbjct: 361 DKFEVYTPDKL-MVYADYDRLVQIIFNITQNAIQFT-ENGVISISAEKGNEETIIRISDN 418

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQ---RRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           G  + E+  ++++ R+       +       GLGLSIV   + LH G V++ S +   TT
Sbjct: 419 GIGMNEEQLRNIWERYYKADPSRKNTKYGESGLGLSIVHQLMQLHQGSVTVESKEGKGTT 478

Query: 784 INCRIPSKE 792
              R P+K+
Sbjct: 479 FTLRFPNKK 487


>gi|294634692|ref|ZP_06713224.1| sensor histidine kinase/response regulator [Edwardsiella tarda ATCC
           23685]
 gi|291091868|gb|EFE24429.1| sensor histidine kinase/response regulator [Edwardsiella tarda ATCC
           23685]
          Length = 778

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 145/372 (38%), Gaps = 18/372 (4%)

Query: 421 VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
            QV+LE +      +    +D   + V     +G     N A   L    E +L   T  
Sbjct: 146 AQVELEQQ----SALLRSFLDSSPDLVYYRNENGEFSGCNRAMELLTGKSEKQLIGLTPR 201

Query: 481 RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTML 540
                  ++   E+D       +  +++       G       +  E   +P  +     
Sbjct: 202 DVYDEDIAQKVIETDEKVFRHNVSLTYEQWLVYPDG-----RKACFELRKVPFYDRVGKR 256

Query: 541 TFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLG 600
             +        ER      +AL  A   K +F+  +S+ELR+PL  I+G + +L  ++  
Sbjct: 257 HGLMGFGRDITER--KRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTE-- 312

Query: 601 SLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIAT 660
            LN +Q +Y++ I  S+  L N+ NDI+++  ++   ++L+   I     L +++     
Sbjct: 313 -LNDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQEIDFTGFLTDLENLSGL 371

Query: 661 KMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
            +    +   +  +  L    +AD  RL QI   ++ NA+ F+ +G   +      +   
Sbjct: 372 LVQPKGLNFTLTPEAGLPHKIMADGTRLRQILWNLIGNAVKFTQQGGVSVRVWREPSDKL 431

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR---GVGLGLSIVESFINLHGGHVSISS 776
            F V++ G  IP D    +F  +     R   +   G G+GL++ +      GG + +SS
Sbjct: 432 FFEVRDTGIGIPRDEQDKIFAMYYQVKDRNGGKPATGTGIGLAVSKRLAQAMGGDIVVSS 491

Query: 777 SDEGVTTINCRI 788
                      I
Sbjct: 492 VAGEGACFTLSI 503



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 21/168 (12%)

Query: 154 KIEGRVSGSCAFLRILSLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAG 213
           +I  RV    A  R+  LD +  E+ +  L   +L    ++ +   DS   LV++R++ G
Sbjct: 118 EIADRVKAEEA--RLQVLDTLQHEIDQRELAQVELEQQSALLRSFLDSSPDLVYYRNENG 175

Query: 214 DILWANISYKKNTETEGIVFQKAIG-ESRKLFKEEIKKRMISSSALEKNFCETVSTL--- 269
           +    N + +  T   G   ++ IG   R ++ E+I +++I +   EK F   VS     
Sbjct: 176 EFSGCNRAMELLT---GKSEKQLIGLTPRDVYDEDIAQKVIETD--EKVFRHNVSLTYEQ 230

Query: 270 ----EHGNNKSYKI------VRVLNSFGEAGIAIDVSKEITVNDQLTH 307
                 G    +++       RV    G  G   D+++     D L +
Sbjct: 231 WLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN 278


>gi|12483718|gb|AAG53733.1|AF178425_3 KinC [Lactococcus lactis subsp. cremoris MG1363]
 gi|2182992|gb|AAC45385.1| histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 475

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 155/387 (40%), Gaps = 41/387 (10%)

Query: 417 ENL-TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLS 475
           E++   Q +LE + N L       + ++ +GV      G I ++N +      T  N L 
Sbjct: 99  EDIVRTQNNLENQRNQL----DSILAYMVDGVIATDRRGNIIMANKSALHYLNTS-NELL 153

Query: 476 PGTHIRNIAATCSRY--YNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL 533
              +I ++     +Y  Y+  +             +E  SL     L        S I  
Sbjct: 154 MEKNIVDVLKIADQYNFYDLLEKEPEITIETHDAGNESISLHIKFALFRRESGFISGI-- 211

Query: 534 PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                +    ++T   +AER               +  FV +VS+ELR+PLT++  + + 
Sbjct: 212 -----IAVLHDMTKQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEA 252

Query: 594 LKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNE 653
           L+   +       S ++   +  +    ++++D+L L+ +D   + LN   I L   L+ 
Sbjct: 253 LEDGAIDD-KETASSFIRCFTNRNQSDDSVISDLLTLSRMDQDRIVLNKEIINLIAFLDY 311

Query: 654 VKQSIATKMH-------ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS 706
               +   +         +N  +      K      D  ++ Q+   I+ NA+ +S KG 
Sbjct: 312 QINRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDTDKIAQVIDNIIGNAIKYSPKGG 371

Query: 707 TVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS---NAHRGQRRGVGLGLSIVES 763
           T+ +       D + S+K+ G  IP+     +F+RF      +   +  G GLGLSIV  
Sbjct: 372 TITIYVETRERDVLISIKDEGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHD 431

Query: 764 FINLHGGHVSISSS-DEGVTTINCRIP 789
            + +HGG +  SS  +   TT +  +P
Sbjct: 432 IVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|193216183|ref|YP_001997382.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
 gi|193089660|gb|ACF14935.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
          Length = 1492

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 156/381 (40%), Gaps = 15/381 (3%)

Query: 421  VQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHI 480
                L               +++  G+ +  P+G+I+  N   + +    +  +   +  
Sbjct: 1114 ENTKLTLSLARWDAKFRNLAENVEYGIMLIDPEGQIEYLNSFMKKVLNYRDKDMLGKSFF 1173

Query: 481  RNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT-- 538
              +               L      + ++  +  +  L   S   + + +   P      
Sbjct: 1174 DFVHPDYVAESKTQFDHALLRDNDFNAEEPSREYELELYAASKESIPFQVTTTPQYIVSA 1233

Query: 539  -----MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDL 593
                 +    ++   +R  RAL  K + L   D I+N+F   V ++++ PL+ I G++D+
Sbjct: 1234 AGNLALEGVFSILVDLRRIRALQRKQKEL---DTIRNNFFAMVVHDMKVPLSAIYGYSDM 1290

Query: 594  LKTSKLGSLNSKQ-SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
            LK     +++ +   + +  I  S+  +  LV +ILD +  ++ ++ LN     L   ++
Sbjct: 1291 LKNFNPQTVDPEYFEEIMSRIHLSAGNINRLVQEILDFSKYESKMVSLNKQRHSLVLCID 1350

Query: 653  EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA 712
             V       + +  I ++         F  D  +L+++F+ + SNA+ FS   ST+ L  
Sbjct: 1351 LVLDQSQHDLQKKQITVRRNVGSSDFYFSFDFDKLVRVFTNLFSNAIKFSKPESTIDLII 1410

Query: 713  ARD----NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLH 768
              +        + S+K+ G  IPE+  + +F+ +     +   RG GLGLSI +  + LH
Sbjct: 1411 RHEVYDNKPYALVSIKDEGEGIPEEEVELIFDAYKQAQSKHGSRGTGLGLSITKQIVELH 1470

Query: 769  GGHVSISSSDEGVTTINCRIP 789
            GG +   S  +  TT +  +P
Sbjct: 1471 GGEIWAESELDVGTTFHFYLP 1491


>gi|190892130|ref|YP_001978672.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190697409|gb|ACE91494.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 511

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 4/237 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASS 617
                +A+  K+ F+  +S+ELR+PL  I+GF++++    +G L N    +Y   I  S 
Sbjct: 252 RRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSG 311

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI I    + +L
Sbjct: 312 QHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQL 371

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            +  AD + + Q+   +LSNA+ F+ +G  + +K      G    S+K+NG  IPE+   
Sbjct: 372 PAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIP 431

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V + F   +   +   +G GLGL IV++ +  H G   + S     T +   +P+K
Sbjct: 432 VVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAK 488


>gi|171915289|ref|ZP_02930759.1| signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 765

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 150/382 (39%), Gaps = 25/382 (6%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT-HIRNIAA 485
            +     +     ID    G+  +         +  ++++   E+  +  G      +  
Sbjct: 222 ERIRKSEEQLKLAIDGSKVGLWDWDLATNTISFSDLWKTMLGYEKEDVGSGPTSWEELLH 281

Query: 486 TCSRYYNESDGWDLFAAIITSFDD--ERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV 543
              R+ N              F++    +   GT   +               + + T+V
Sbjct: 282 PADRFRNNDLIRGHLQGETEVFENIARYRRKDGTYVWMMARGRALRDGRDRVCRFVGTYV 341

Query: 544 NVTDSVRAERALT-------EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           ++T     E+ L           E    A   K+ FV  +S+E+R+P+  ++G   LL+ 
Sbjct: 342 DMTRQKELEQQLREVQAMQRMACEQAEAASRSKSIFVASMSHEIRTPMNGVLGMLQLLRD 401

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
           +    L+  Q++ V     S+  LL ++ DILDL+ V++G M+L      L  L +E++ 
Sbjct: 402 T---PLSEAQAKLVHSAERSTDALLEVIGDILDLSKVESGKMELTIKPFQLASLFSEIQS 458

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGST-VILKA-- 712
            +  +    +I++       L  +V  D   + QI   I+ NA+ F+ +G   V ++   
Sbjct: 459 LMQVRADAKDIQMVFAVPADLPEWVAGDAGCIRQILINIIGNAVKFTERGRVDVEVECSL 518

Query: 713 ---ARDNGDFI---FSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESF 764
              +   G  +    SV++ G    E+    +F  F  N   G  ++ G GLGL+I +S 
Sbjct: 519 RPSSEPGGKVVQLNVSVRDTGVGFGEEFFSRIFQPFSRNEEAGGLRQGGTGLGLAISKSL 578

Query: 765 INLHGGHVSISSSDEGVTTINC 786
             L GG +S  S  +  +    
Sbjct: 579 AELMGGSISAHSVLKQGSQFQI 600


>gi|327189383|gb|EGE56551.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 511

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 4/237 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASS 617
                +A+  K+ F+  +S+ELR+PL  I+GF++++    +G L N    +Y   I  S 
Sbjct: 252 RRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSG 311

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI I    + +L
Sbjct: 312 QHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQL 371

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            +  AD + + Q+   +LSNA+ F+ +G  + +K      G    S+K+NG  IPE+   
Sbjct: 372 PAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIP 431

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V + F   +   +   +G GLGL IV++ +  H G   + S     T +   +P+K
Sbjct: 432 VVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAK 488


>gi|20387468|gb|AAK54087.2|AF362368_1 histidine kinase DhkF [Dictyostelium discoideum]
          Length = 1548

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 89/409 (21%), Positives = 169/409 (41%), Gaps = 28/409 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE---TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +  N     I  F  +T +  +E    K +  + +    +D       +   +G+I   
Sbjct: 579 TLNPNILDTNILTF--ITNRTSMEFEKKKVSDQLIIAKNLLDQSPSCSCLVSRNGKIIRK 636

Query: 460 NPAF--RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             AF  R L       +S      +I+    +   E++        IT  + E+   +  
Sbjct: 637 IGAFYERLLGLEIGENISSVEKSSDISTILKQVCFENNNLST-ETTITKKNGEKYPAEVF 695

Query: 518 LELLSD----SVLEYSIIPLPNAQTMLTFVNVTDSVRAE------RALTEKNEALRKADE 567
           ++ +SD    S+    I+     Q  L  +N+    ++E      + L E  +    A +
Sbjct: 696 VKEISDIHSNSIGIMIIVRDITDQIRLKEMNIELQKKSELEQKRNQELMEARDLALTATK 755

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+  +S+E+R+PL  II   ++L ++    LN++Q    E I  SS +LL++ +DI
Sbjct: 756 IKSQFLATISHEIRTPLNGIITMGEMLLST--SPLNTEQHDIAETIFGSSELLLSITSDI 813

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++A  ++L          L  + ++I   +    I I  + D  +    + D  R
Sbjct: 814 LDFSKIEASKLELEMIEFDFIGCLEGIGKTIGVSITNKPIEIAFLMDTDIPHRLIGDPNR 873

Query: 687 LLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           L+QI   + +NA+ ++ +G  V    ++   ++      S+ ++G  I ED    +F  F
Sbjct: 874 LIQIMLNMGTNAVKYTDRGHIVFRISVISREQNRCKIKISIDDSGIGIGEDQRAHLFEPF 933

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS-SSDEGVTTINCRI 788
                   R   G GLGL+I      L GG V +  S     +  +  +
Sbjct: 934 HQIDSSSTRKYGGSGLGLAISSKLAKLMGGEVILERSKPGVGSLFSVTL 982


>gi|66819379|ref|XP_643349.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74857212|sp|Q551X9|DHKF_DICDI RecName: Full=Hybrid signal transduction histidine kinase F
 gi|60471411|gb|EAL69371.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1109

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 89/409 (21%), Positives = 169/409 (41%), Gaps = 28/409 (6%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLE---TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLS 459
            +  N     I  F  +T +  +E    K +  + +    +D       +   +G+I   
Sbjct: 140 TLNPNILDTNILTF--ITNRTSMEFEKKKVSDQLIIAKNLLDQSPSCSCLVSRNGKIIRK 197

Query: 460 NPAF--RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
             AF  R L       +S      +I+    +   E++        IT  + E+   +  
Sbjct: 198 IGAFYERLLGLEIGENISSVEKSSDISTILKQVCFENNNLST-ETTITKKNGEKYPAEVF 256

Query: 518 LELLSD----SVLEYSIIPLPNAQTMLTFVNVTDSVRAE------RALTEKNEALRKADE 567
           ++ +SD    S+    I+     Q  L  +N+    ++E      + L E  +    A +
Sbjct: 257 VKEISDIHSNSIGIMIIVRDITDQIRLKEMNIELQKKSELEQKRNQELMEARDLALTATK 316

Query: 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
           IK+ F+  +S+E+R+PL  II   ++L ++    LN++Q    E I  SS +LL++ +DI
Sbjct: 317 IKSQFLATISHEIRTPLNGIITMGEMLLST--SPLNTEQHDIAETIFGSSELLLSITSDI 374

Query: 628 LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FVADRQR 686
           LD + ++A  ++L          L  + ++I   +    I I  + D  +    + D  R
Sbjct: 375 LDFSKIEASKLELEMIEFDFIGCLEGIGKTIGVSITNKPIEIAFLMDTDIPHRLIGDPNR 434

Query: 687 LLQIFSKILSNAMDFSSKGSTV----ILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF 742
           L+QI   + +NA+ ++ +G  V    ++   ++      S+ ++G  I ED    +F  F
Sbjct: 435 LIQIMLNMGTNAVKYTDRGHIVFRISVISREQNRCKIKISIDDSGIGIGEDQRAHLFEPF 494

Query: 743 VSNAHRGQR--RGVGLGLSIVESFINLHGGHVSIS-SSDEGVTTINCRI 788
                   R   G GLGL+I      L GG V +  S     +  +  +
Sbjct: 495 HQIDSSSTRKYGGSGLGLAISSKLAKLMGGEVILERSKPGVGSLFSVTL 543


>gi|320155983|ref|YP_004188362.1| putative sensor/response regulator hybrid [Vibrio vulnificus
           MO6-24/O]
 gi|319931295|gb|ADV86159.1| probable sensor/response regulator hybrid [Vibrio vulnificus
           MO6-24/O]
          Length = 571

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 117/258 (45%), Gaps = 10/258 (3%)

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
           A  +   +N    +  E  L ++ E   ++++    FV  +++ELR+PL  ++G  +LL 
Sbjct: 178 ADLVSNALNRQLWMERETELRKRAE---ESEKATKEFVAMINHELRTPLNGVLGSAELLG 234

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            +    LN +Q  Y+  +     +L  ++ND+LD + ++AG+M++        ++   + 
Sbjct: 235 NTY---LNDEQQLYLRNLRQGGELLRVIINDLLDFSKMNAGMMEIVPKVFRWREVEESIV 291

Query: 656 QSIATKMHENNIRIKVISD-GKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR 714
              A K  E  I   +    G       D +R+ QI   ++ NA+ F+  G+ V  +   
Sbjct: 292 GIFAAKASEKQIGFHIEKQFGMPSCVCGDVERIKQILVNLIGNAIKFTQHGA-VTFRTHW 350

Query: 715 DNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHV 772
            +      +++ G  I E    ++F+ FV      +R   G GLGL+I ++  +L GG +
Sbjct: 351 QDDVLSVEIEDTGIGIAEQAKSTLFDPFVQADRSSKRNYEGSGLGLAICQNLCHLMGGEI 410

Query: 773 SISSSDEGVTTINCRIPS 790
              S     +  +  IP 
Sbjct: 411 GFRSELGQGSCFHFAIPL 428


>gi|303249390|ref|ZP_07335615.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302489208|gb|EFL49174.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 545

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 152/374 (40%), Gaps = 18/374 (4%)

Query: 427 TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAAT 486
           ++     +      +    G+ +   +G +  +NP    L       +     IR++   
Sbjct: 30  SRLRLRQERCELFFERSVMGILLGDNEGNLFDANPRALELLGYTLEEIRAAN-IRDLIHP 88

Query: 487 CSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFV--N 544
                       + +     F  ER+  +     L    ++    PL +       +  +
Sbjct: 89  DDMRMVSCMAGPMASLAGLPFTIERRYRRKDGTWL---PVQVDFSPLDDTGQCFQAMLQD 145

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
           ++    AE A       +R A + K++F+ ++S+E+R+PL  ++G   LL  +     + 
Sbjct: 146 ISARRAAEDAKNAALSQVRSASQAKSAFLANMSHEIRTPLNGVMGMLQLLLATPH---SP 202

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           +Q +Y+     +++ LL L++DILD +++D G M L+     ++D+L+ +  S A +   
Sbjct: 203 EQDEYMRTAMDAASALLRLLSDILDFSSLDGGTMSLSQELFTVSDVLDPIIASFAHEAAI 262

Query: 665 NNIRIKV-ISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----- 718
             +     ++         D  RL Q+   +  NA+ +++ G   +  A  +  +     
Sbjct: 263 KGLAFSCRVAPQTPARLRGDPARLRQLLYNLTGNAIKYTTFGRVELDVAPVEKPESPCMA 322

Query: 719 -FIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS 775
              F+V++ G  IP +    V + F            G+GLGL+IV +     GG + +S
Sbjct: 323 LLEFAVRDTGIGIPSEKLDHVLDAFAQADASVTRAHGGLGLGLTIVRAIAERMGGRILLS 382

Query: 776 SSDEGVTTINCRIP 789
           S     T    R+P
Sbjct: 383 SQPGQGTEARVRLP 396


>gi|260439089|ref|ZP_05792905.1| putative response regulator receiver domain protein [Butyrivibrio
           crossotus DSM 2876]
 gi|292808401|gb|EFF67606.1| putative response regulator receiver domain protein [Butyrivibrio
           crossotus DSM 2876]
          Length = 1103

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 154/346 (44%), Gaps = 28/346 (8%)

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
                   +R+       NI    SR Y +    +    I   + + R+ +    + +  
Sbjct: 543 EEFTDEYVSRIVHPDDEMNIRRCNSREYLDEMMANGKDEI---YCEYRRLVDNEYKWVR- 598

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSV-------RAERALTEKNEALRKADEIKNSFVQHV 576
             L+  I    +  TM     + D         +  + L E  +A  +A++ K++F+ ++
Sbjct: 599 --LDIKITKFCDGHTMEAVYALKDIHEERDMELKRNKQLVEATDAANRANKAKSNFLSNM 656

Query: 577 SYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY--VEYISASSTILLNLVNDILDLATVD 634
           S+++R+PL  IIG TD+     +  + ++Q  Y  +  I +S  ILL LVN+ILD++ ++
Sbjct: 657 SHDIRTPLNAIIGMTDM----AINHIENRQRVYSNLMKIKSSGRILLYLVNNILDMSYIE 712

Query: 635 AGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVIS-DGKLGSFVADRQRLLQIFSK 693
           +G + +N S + L DL + V   +  ++ E +++ KV + + K    ++D+  L +I   
Sbjct: 713 SGKVVVNESPLSLADLFHSVATMVQGQIKEKHLKFKVYAKNVKNEIVLSDKSTLNKIIIN 772

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDF------IFSVKNNGSSIPEDMCKSVFNRFVSNAH 747
           +L N++ ++ +   V L       +       I  + + G  + ED  K +F  F     
Sbjct: 773 LLGNSIKYTKEYGLVSLSIEEQPTEITDLSNYIIKISDTGIGMSEDFVKRMFEPFERAKD 832

Query: 748 RG--QRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
                  G GLG+SI +  I + GG++ + S     +     IP K
Sbjct: 833 TTISGVEGTGLGMSITKQLIEIVGGNIDVKSELNVGSEFTVTIPLK 878


>gi|229085933|ref|ZP_04218157.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44]
 gi|228697369|gb|EEL50130.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44]
          Length = 458

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
            +  +++++ DE++  FV +VS+E +SPL++I GF+  L++  +     +Q  Y++ I  
Sbjct: 226 KKMTKSIKELDEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENV--TEEEQKHYLQIIEG 283

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
            S  + +L   +L LA++D     L      L   + +V   +  K  E +I ++     
Sbjct: 284 ESKRMSSLCKQLLTLASLDKEETVLQVKEFNLQKQIKDVVFMLEWKWREKDIAVEFDVPN 343

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
              +   D   L Q+++ + +N++ F+ +G T+   A         SV ++G  + ++  
Sbjct: 344 --MNITGDENLLHQVWANLFTNSIKFTDQGGTIEFAAKELENSVEISVSDSGIGMEQEEV 401

Query: 736 KSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +F+RF        R   G GLGLSIV   + LH G +S+ S     TT    IP 
Sbjct: 402 NRIFDRFYKVDTARARNVEGSGLGLSIVHKIVELHHGIISVESKKGEGTTFRIEIPK 458


>gi|219848094|ref|YP_002462527.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219542353|gb|ACL24091.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 354

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 114/246 (46%), Gaps = 7/246 (2%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +      +  +  EAL + ++ + + + +V++ELR+PL  I G+ + L     G L ++ 
Sbjct: 107 ELRAVAESFNQMAEALEQIEQRRVTMIGNVAHELRTPLAGIEGYLEGLID---GVLPAEA 163

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             ++E        L  LV+D+  L+ V+AG + L+++T  +N+++  V   +  ++ +  
Sbjct: 164 DTFLEMKH-EVRRLHRLVDDLQTLSRVEAGQISLHFTTFDINEVIRHVVSQLQPQVLDGC 222

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
           ++I      +     AD  R+ QI   +L NA+ ++ +G  + +++   N     +V++ 
Sbjct: 223 LKIICERTDQPILTRADPDRVAQILLNLLGNAVRYTPEGGCITVRSDLVNEWVKVTVEDT 282

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD-EGVTT 783
           G  I  +    +F RF        R   G G+GL+I        GG ++  S+     + 
Sbjct: 283 GIGIAPEHLPYIFERFYRADPSRSRASGGSGIGLTIARHLAWAMGGDITAYSAGLGKGSR 342

Query: 784 INCRIP 789
               +P
Sbjct: 343 FTLTLP 348


>gi|320353326|ref|YP_004194665.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfobulbus propionicus DSM 2032]
 gi|320121828|gb|ADW17374.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfobulbus propionicus DSM 2032]
          Length = 1165

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 111/661 (16%), Positives = 230/661 (34%), Gaps = 68/661 (10%)

Query: 173  GIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIV 232
            GI S++       + L         +  +     W  D  G ++  N +Y   T      
Sbjct: 386  GIISDITARKQAEETLRAREHYLHTILQTSVEGFWVLDTQGRVVEVNNAYLAMTGYSRRE 445

Query: 233  FQKAIGESRKLF--KEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRV-LNSFG-- 287
              +            ++I  R+    A      E+    + G+    ++    L+  G  
Sbjct: 446  ILRLSISDLDAIESPDQIAVRIQRIIANGSELFESRHRRKDGSLFPVEVSVTWLDEEGGR 505

Query: 288  EAGIAIDVSKEITVNDQLTHTYEILHNLTV----AIAIFDQNRYLQFHNRSFVELWEIDL 343
                  D+S+     + L H++E++ +L       +A+ D+N    + ++ ++E++ +  
Sbjct: 506  MVCFCRDLSERKRAEEALRHSHELMRHLIEHTNSGVAVHDRNLRYVYVSQRYLEMYGLKG 565

Query: 344  AFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVY--KSSETHKDTWHLPNGQTLH 401
              +      D   +       LPE+     W++    V   K+    +D +   +G    
Sbjct: 566  RDVIGQHHYDIFPD-------LPEK-----WRDVHRQVLTGKTMSAKRDPYVRADGTMEW 613

Query: 402  VI-------VTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
                      +    GG I   E +T QV  E       + Q   ID     +    P+G
Sbjct: 614  TRWECRPWYESPGTIGGLIVYTEVITEQVLAEEALRKSEEFQRALIDASPLAIISLDPEG 673

Query: 455  RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSL 514
            ++   N A   ++   E        +   +              L   I+      R  L
Sbjct: 674  QVLSWNRAAERIFGWSEKEALGQFLLIGNSEQAETLAA------LRTRILAGETLSRLEL 727

Query: 515  QGTLELLSDSVLEYSIIPLPNAQT-----MLTFVNVTDSVRAERALTEKNEALRKADEIK 569
                +  S  V+  S  P+ N        M    ++++  RAE         L++A +++
Sbjct: 728  HLCHKDGSPIVVSLSTAPIRNPDGELIAIMSVLEDISERKRAEEEKKLLAVQLQQAQKME 787

Query: 570  N--SFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
               +    ++++  + L  IIG+ ++ K +      +  ++ +E I  +     +LV  I
Sbjct: 788  AIGTLAGGIAHDFNNLLGVIIGYGEIAKEALPDHSTT--ARDLEKILEAGERAADLVKQI 845

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            L           +    +    L+ E  + +   +    I I+     + G+ +AD  ++
Sbjct: 846  LAFGR----RANVEKIPLEPVHLVKEAVKLLRATLPS-TITIRQQLSARTGTILADPTQI 900

Query: 688  LQIFSKILSNAMDFSSK-GSTVILKAA---------------RDNGDFIFSVKNNGSSIP 731
             QI   + +NA     + G  + +  A               R     + +V + G  IP
Sbjct: 901  HQIVMNLCTNAFHAMEQTGGVLDITLAECERDVQDLLYHPQVRPGKFVVLTVADTGPGIP 960

Query: 732  EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
             ++   +F  + +    G  +G GLGL+IV   +   GG ++  S     T  +  +P+ 
Sbjct: 961  PEIRDKIFEPYFTTKGVG--KGTGLGLAIVHGIVADTGGFITCESEPGQGTAFHVFLPAH 1018

Query: 792  E 792
            E
Sbjct: 1019 E 1019



 Score = 54.9 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 70/524 (13%), Positives = 154/524 (29%), Gaps = 64/524 (12%)

Query: 170 SLDGIYSELAETTLKCKKLSNHISVFKVLFDSLDFLVWHRDQAGDILWANISYKKNTETE 229
               + + +AE    C  L    + F   +          D AG +   N ++  +    
Sbjct: 6   EFALLRARIAELEAACADLEARCAQF-DQYPYGPLACQSLDAAGRLADVNQAWLDSL--- 61

Query: 230 GIVFQKAIGESRKLFKEEIKKR-----MISSSALEKNFCETVSTLEHGNNKSYKIVRVLN 284
           G   ++ IG +   F    +++     M    AL++     ++      +  +    +  
Sbjct: 62  GYTREEVIGRAFTDFLPPDQRQCFGGMMSRIEALDEILGAELAMAARDGSTLWGACNIRA 121

Query: 285 SFGEAG-------IAIDVSK----EITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNR 333
                G       + ID++     E    +   H   IL+  T  I + D        N 
Sbjct: 122 ERDAQGRLLKTRWVFIDITARLLAENERRENEMHLKAILNASTETIQLLDTEGRTIIANE 181

Query: 334 SFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWH 393
           +  +   + +  L   P    + +F   A  + EQ      +E    V  + +       
Sbjct: 182 ASAKRLHVSVDDLIGRP----VFDFFPPA--VAEQR-----RECCRQVVATGQPLTVQDE 230

Query: 394 LPNGQTLHVIVTSNPRG----GTIWMF-ENLTVQVDLETKYNTLVKVQGETIDHLSEGVA 448
             +G      +            I +F  ++T +  +E +      +     + +  GV 
Sbjct: 231 R-DGIAFEAYLYPVADEQGVVRRIALFSMDITRRKAMERQLAESHALLANLANQVP-GVV 288

Query: 449 VFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFD 508
                         +R               I NI         E              D
Sbjct: 289 ------------YQYRLYPDGRSCFPYASPGIWNIYEVTPEQVREDAAPVFDRLHPADHD 336

Query: 509 DERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAER--ALTEKNEALRKAD 566
              +++  +   L     E+ +I LP  Q +  + +     R E    L     +   A 
Sbjct: 337 RVAEAILASARTLETFFCEFKVI-LP-RQGLRWYWSQAQPQRLEDGGTLWHGIISDITAR 394

Query: 567 EIKNSFVQHVSYELRSPL-TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVN 625
           +     ++   + L + L T++ GF  L    ++  +N+       Y       L     
Sbjct: 395 KQAEETLRAREHYLHTILQTSVEGFWVLDTQGRVVEVNNAYLAMTGYSRREILRLS---- 450

Query: 626 DILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
            I DL  +++     +   + +  ++    +   ++    +  +
Sbjct: 451 -ISDLDAIES----PDQIAVRIQRIIANGSELFESRHRRKDGSL 489


>gi|260173810|ref|ZP_05760222.1| putative two-component regulator sensor kinase [Bacteroides sp. D2]
 gi|315922073|ref|ZP_07918313.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695948|gb|EFS32783.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 754

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 124/252 (49%), Gaps = 12/252 (4%)

Query: 544 NVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLN 603
           N+ D    E  L      L +  E+K SF+ ++S+E+R+PL +I+GF ++L     G  +
Sbjct: 508 NIQDIKDREEELEAAR-LLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALED-GLSS 565

Query: 604 SKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMH 663
            ++ +Y+  I+ +S +LL L+NDIL+L+ +++G M  ++    + +L++++  +    + 
Sbjct: 566 VEREEYIGTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIA 625

Query: 664 ENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKG----STVILKAARDNGDF 719
              +      D        DR+RL+Q+ +  L+NA  F+  G      + L    D G  
Sbjct: 626 PR-LEFLKEVDNIPLEINVDRERLIQVLTNFLNNASKFTETGYIKLGYIYL---PDEGRV 681

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
              V++ G  IP +  + +F+RF       Q  G GLGLSI +  I   GG + + S   
Sbjct: 682 RIYVEDTGRGIPREEQRMIFSRFYKQNEFSQ--GAGLGLSICQVIIEKLGGRIELKSEVG 739

Query: 780 GVTTINCRIPSK 791
             +     +P +
Sbjct: 740 KGSRFTVVLPCR 751


>gi|229586477|ref|YP_002844978.1| Histidine kinase sensor protein [Rickettsia africae ESF-5]
 gi|228021527|gb|ACP53235.1| Histidine kinase sensor protein [Rickettsia africae ESF-5]
          Length = 497

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 7/255 (2%)

Query: 538 TMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTS 597
           T      + + +   R L  +   + K       F  ++S+ELR+PL  IIGF+++L + 
Sbjct: 238 TNYARQIIEEQLETNRNLKAQIVKVEKTSSSNTKFFTNISHELRTPLNAIIGFSEILMSE 297

Query: 598 KLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQS 657
           +      K   Y++ I+ +   LL+++NDILDL+   A  +K++   + LN L+      
Sbjct: 298 RDA---EKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLIL 354

Query: 658 IATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN- 716
           + T+  +  + +      +     AD +RL Q+F  +LSNA+ F++ G +V +   +D  
Sbjct: 355 VKTRADQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDEL 414

Query: 717 -GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
                  V + G  I E       + F         +  G GLGL + +  + L  G   
Sbjct: 415 AKLVYIKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFD 474

Query: 774 ISSSDEGVTTINCRI 788
           + S     TTI    
Sbjct: 475 LQSKINEGTTITITF 489


>gi|162448456|ref|YP_001610823.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161159038|emb|CAN90343.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 846

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/647 (17%), Positives = 238/647 (36%), Gaps = 56/647 (8%)

Query: 174 IYSELAETTLKCKKLSNHISVFKVLFDSLDFLVW-HRDQAGDILWANISYKKN---TETE 229
           +++ +AE       L                  W     + ++LW++  Y+      +  
Sbjct: 215 LHATIAEARQAEAALRLSEDSLARAQRLAKLGNWDWHIPSNELLWSDECYRMLGVSRDAG 274

Query: 230 GIVFQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTL-EHGNNKSY----KIVRVLN 284
            + +++ +       +E + + +  +      +C     +  +G  +S      ++R  +
Sbjct: 275 ALTYERFLAFIHPEDREGVIRSVDLALQGTLPYCVDYRIVRPNGEERSLHTEADVIRAED 334

Query: 285 --SFGEAGIAIDVSKEITVNDQLTHTYEIL----HNLTVAI--AIFDQNRYLQFHNRSFV 336
                  G A+DV+++   +  L  + E L     + +  I           ++ N + +
Sbjct: 335 GSPLRMIGTALDVTEQRRADRALRLSEERLRMIAEHASDVIFHIRLGPEGGYEYINPAVL 394

Query: 337 ELWEIDLAFLATNPSNDELLEFLRSANKL---PEQLNWKTWKENIFSVYKSSETHKDTWH 393
           E      A    NP     L       +     E +     +     + +S  T   + H
Sbjct: 395 EHTGYPPAAWYENPELFVTLIHPEDVGRYHAFVEHMAAAGGRLTFRIIDRSGRTRWVSTH 454

Query: 394 LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGE------TIDHLSEGV 447
           +    T+      NP  G     +  T ++  E +   L ++  E       I+    G+
Sbjct: 455 I----TIQHDEHGNPIAGIGISRDVTTEKLADEEREQLLGQLAAERRWLHAVIERSPVGI 510

Query: 448 AVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSF 507
            +    G     N   + L  T+     PG     +         E          +TS 
Sbjct: 511 LLLDRAGAQIARNRRAQELAGTDSPPGLPGAWCLCLPDGQPLTDEEQPSASALRGEVTS- 569

Query: 508 DDERKSLQGTLELLSDSVLEYSIIPLP----NAQTMLTFVNVTDSVRAERALTEKNEALR 563
                S + +L     S+L       P    N + +   V   D  R           L+
Sbjct: 570 -----SRELSLRRADGSMLAVLASAGPIVDGNGKLLGAVVVFDDITR-----------LK 613

Query: 564 KADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNL 623
           + + +K  +   V+++L+ P+T IIG+   L+     +   K      +I AS+  L  +
Sbjct: 614 ELERLKEEWTSVVAHDLKQPVTTIIGYATQLERKPQVTTAVKTR--AGHILASAKRLGRM 671

Query: 624 VNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVAD 683
           V+D+ D++ +++  + +  + I    L+  V + + +++      + V S G++    AD
Sbjct: 672 VSDLTDISQIESRRLAIERAPIDPRALVEAVVERMESEIE--GRAVDVESRGEIPIVHAD 729

Query: 684 RQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFV 743
             R+ Q+ S ++SNA+ +    + + +   R       S++N+G  IP      +F RF 
Sbjct: 730 AGRVEQVLSNLISNAVKYGDPEAPIQVALERRGDAVQISIRNSGRGIPAQDLPLLFERFF 789

Query: 744 SNAHRGQR-RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
               + +R  G+GLGL I +  +  HGG + + S + G TT +  +P
Sbjct: 790 RGKAKEERVVGLGLGLYIAKGLVEAHGGRIWVESPEGGRTTFHFTLP 836


>gi|167769268|ref|ZP_02441321.1| hypothetical protein ANACOL_00591 [Anaerotruncus colihominis DSM
           17241]
 gi|167668908|gb|EDS13038.1| hypothetical protein ANACOL_00591 [Anaerotruncus colihominis DSM
           17241]
          Length = 1072

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 159/377 (42%), Gaps = 27/377 (7%)

Query: 427 TKYNTLVKVQGETIDHLSE----GVAVFGPDGRIKLSNPA----FRSLWKTEENRLSPGT 478
            +YNT+        +++       + +F  +GR+ L+N      F         R     
Sbjct: 223 RRYNTIQINTHNFAEYIYSSTKTPILIFDNEGRLALANKCTPLFFDLPAGALMGRRPEDL 282

Query: 479 HIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQT 538
            +R  A      +++S         +  F+  +K    T+  + D+  E          T
Sbjct: 283 FLRVPADGVGETHSDSPVQMTRFNSVCRFN--KKPCDITVTNVYDAYSEVI-------GT 333

Query: 539 MLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSK 598
           +    ++T+++R  + L     A  +++ +K++F+ ++S+E+R+P+  +IG +++L   K
Sbjct: 334 IYVVYDMTENMRRIQLLDRMRRAEVESNRLKSTFLANMSHEIRTPINAVIGMSEILMRKK 393

Query: 599 LGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSI 658
              L       V  I ++   LL ++++ILD + +++G  +L  +  +L  L+  V   I
Sbjct: 394 ---LPDDLRADVGVIHSAGQGLLAIISEILDFSKIESGKFELIETEYMLPALVETVVHII 450

Query: 659 ATKMHENNIRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNG 717
             +  +  + + +  +         D QR+ QI   +LSNA  F+  G   +       G
Sbjct: 451 GVRFSKKPVCLLIDIEPDTPIGLFGDNQRVQQILLNLLSNAEKFTQSGYVRLYWRWEHAG 510

Query: 718 D----FIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGH 771
           +     I SV++ GS I  +  + +F ++     +  R   G GLGL+I      + GG 
Sbjct: 511 EDMVRMIISVEDTGSGIRPENLEKIFAQYQQVDAKSNRALVGTGLGLAIGREMARMMGGD 570

Query: 772 VSISSSDEGVTTINCRI 788
           +++ S     +      
Sbjct: 571 ITVESEYGKGSVFTVTF 587


>gi|241206010|ref|YP_002977106.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859900|gb|ACS57567.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1128

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 6/244 (2%)

Query: 548 SVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQS 607
             + + AL    E    A+  K+ +V  +S+ELR+PL  ++G+  +L+  +  ++ + + 
Sbjct: 656 HKKTDAALQNAKETAEAANRAKSRYVVGLSHELRTPLNAVLGYAQILERDE--TIPAPRQ 713

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             ++ I  S+  L  L++ +LD++ ++AG +++  + I + D L+++      +     +
Sbjct: 714 SSIKVIRRSAEHLSGLIDGLLDISKIEAGRLQVYSNEINIQDFLDQIVDMFRPQAQAKGL 773

Query: 668 RIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNN 726
                    L  FV  D +RL QI   +LSNA+ F+ +GS V       +    F+V + 
Sbjct: 774 AFIHERAPALPQFVRTDEKRLRQILVNLLSNAIKFTDEGS-VTFDVGYRSQVATFTVADT 832

Query: 727 GSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTI 784
           G  I E     ++  F        R   G+GLGL+I     N  GG +S+SS  E  +T 
Sbjct: 833 GRGITEKDLPRIYEPFQRGEAESVRPMPGLGLGLTITRLLTNTLGGEISVSSVKEEGSTF 892

Query: 785 NCRI 788
             R+
Sbjct: 893 RVRL 896


>gi|220923690|ref|YP_002498992.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219948297|gb|ACL58689.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 737

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 14/253 (5%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              ++E  L    +    A   K  F+  +S+E+R+PL  IIG+TD+L       L  +Q
Sbjct: 225 HRSKSEAELRRARQRAEAASRAKTDFLASMSHEIRTPLNGIIGYTDVLLDQ---DLKPEQ 281

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
            + +E I  +   LL +VNDILD + ++AG + L      L  L++     IA       
Sbjct: 282 RRLLERIQFAGAALLTVVNDILDFSKIEAGQVALEPRPFSLVALVSNTVSIIAEAAQRKG 341

Query: 667 IRIKVISDGKLGS-FVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN-----GDFI 720
           + + V  D  + +  + D  RL Q+   +L+NA+ F+ +GS + L+   ++         
Sbjct: 342 LALTVDVDPHMPAAVIGDEDRLRQVLLNLLNNALKFTHEGS-ITLQVRCEDSLSDCQWIC 400

Query: 721 FSVKNNGSSIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSD 778
           FSV + G  IP+D  + +F+RF    H   R   G GLGL+I +  I+L GG + + S +
Sbjct: 401 FSVTDTGIGIPKDQHEHLFHRFYQVQHSSTREIGGTGLGLAISKRLISLMGGEIGLESEE 460

Query: 779 EGVTTINCR--IP 789
              +    +  +P
Sbjct: 461 GKGSRFWFKVLLP 473


>gi|115526592|ref|YP_783503.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115520539|gb|ABJ08523.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 1123

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 6/254 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT L    +    R +  L    EA   A+  K+ +V  +S+ELRSPL  I G+  LL+ 
Sbjct: 641 QTTLLMQEIDAHSRTDAELQRAKEAAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ 700

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               SL  K    V  +  S+  L  L++ +LD++ ++AG + L+   + L + L+++  
Sbjct: 701 DA--SLLPKPRDQVRQVRRSAEHLSGLIDGLLDISKIEAGRLYLSRDEVRLGEFLDQLVG 758

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
                    NI         L   V AD +RL Q+   +LSNA+ F+ +GS V       
Sbjct: 759 MFRLHAAAKNIDFVFERPNYLPPVVFADEKRLRQVLINLLSNAIKFTQQGS-VHFIMHYR 817

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGHVS 773
           N    F +++ G  I     + +F  F   A        G GLGL+I +    + GG + 
Sbjct: 818 NPVAEFEIRDTGPGIHAGDLERIFAPFERGALGVSQPHTGTGLGLTISKLLSGVMGGDIR 877

Query: 774 ISSSDEGVTTINCR 787
           +SS+    +T   +
Sbjct: 878 VSSAVGKGSTFYVK 891


>gi|332712371|ref|ZP_08432298.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348845|gb|EGJ28458.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 375

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 161/381 (42%), Gaps = 21/381 (5%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   +   ++   +    +++  E +AVF  + R   +NPA    +   ++ L     
Sbjct: 6   SDRKPAKLFLSSREDLLESLVENSPECIAVFDREFRYVYANPALSQAFGIAQSEL----- 60

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPL------ 533
              I  T        D   L+   +       +  +   + ++++ L++    L      
Sbjct: 61  ---IGKTHHDLQMPEDFIHLWDRAMEKVFATGQEKRIEFQWITENGLQFYQSCLVPELAS 117

Query: 534 -PNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTD 592
             + + +L +             +   E L+ ++     F    S++L+ PL  +  FT+
Sbjct: 118 HGSVEFVLGYSCNISDRITNTEFSRSIEQLQNSNRELEQFAYVASHDLQEPLRKVKSFTE 177

Query: 593 LLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLN 652
           LL     G L+ +  +Y+ YI      +  L+ D+L  + +  G  +L +    + ++L 
Sbjct: 178 LLVEEYQGKLDGEADKYMAYIVDGVFRMQTLIKDLLAYSRL--GRSELTFEPTDIAEVLE 235

Query: 653 EVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF-SSKGSTVILK 711
           +V ++++  + EN+    VI+   L +  A+ Q ++++F  ++SN + F S     + ++
Sbjct: 236 QVLENLSVTIKENH---AVITHDPLPTIPANPQHMVELFQNLISNGIKFRSEATPEIHIE 292

Query: 712 AARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGH 771
           A      ++  V++NG  IP    + +F+ F     R +  G G+GL+I +  +  HGG+
Sbjct: 293 AQLQESQWLIGVRDNGIGIPSKYAERIFSIFQRLHGRSKYPGTGIGLAICQKIVQCHGGN 352

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S     +     +P  +
Sbjct: 353 IWVESESGVGSRFYFTLPIHQ 373



 Score = 44.5 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 22/155 (14%)

Query: 296 SKEITVNDQLTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPS 351
           S        L+   ++L +L       IA+FD+     + N +  + + I  + L     
Sbjct: 6   SDRKPAKLFLSSREDLLESLVENSPECIAVFDREFRYVYANPALSQAFGIAQSELIGKTH 65

Query: 352 NDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSET--HKDTWHLPNG-----QTLHVIV 404
           +D          ++PE      W   +  V+ + +    +  W   NG       L   +
Sbjct: 66  HD---------LQMPEDF-IHLWDRAMEKVFATGQEKRIEFQWITENGLQFYQSCLVPEL 115

Query: 405 TSNPRGGTIWMF-ENLTVQVDLETKYNTLVKVQGE 438
            S+     +  +  N++ ++       ++ ++Q  
Sbjct: 116 ASHGSVEFVLGYSCNISDRITNTEFSRSIEQLQNS 150


>gi|186683294|ref|YP_001866490.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
 gi|186465746|gb|ACC81547.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
          Length = 475

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 159/396 (40%), Gaps = 19/396 (4%)

Query: 399 TLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDH-LSEGVA--VFGPDGR 455
           TL V    NP+G  +   +    ++D + K  + V    E + H + +GVA  V     R
Sbjct: 89  TLRVF---NPQGSLLATSD---PRLDSQVKDWSQVPGIREALQHRVKQGVAKGVLSNSDR 142

Query: 456 IKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDER--KS 513
           + ++ P            +     +       +R      G      ++ +    R  +S
Sbjct: 143 LYITRP--IERNGQLLGVIRMSMTLEQFQRQFARVIWSILGTLAVTILLCALISSRFARS 200

Query: 514 LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFV 573
           L   +E++ +  +        +    LT     +  +    L   +E L   D+ +  F+
Sbjct: 201 LSKPIEIMQNFAIRLGG---GHFGDKLTIHENNELDQLAAELNRMSERLASLDKERRVFL 257

Query: 574 QHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATV 633
            +VS+ELR+P++N+    D LK          + ++ + I   +  L  L++D+LDL  +
Sbjct: 258 ANVSHELRTPISNVQVTVDALKAGA-SEEPELRDRFFQTIENETKRLSRLIHDLLDLGRL 316

Query: 634 DAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSK 693
           +AG+ +L    I L+ L+N    ++  +M    I  +V           D +RLLQ    
Sbjct: 317 EAGVFELEKQPISLHGLINRAVNALEPRMLSLGISTQVNVGN--LMIQGDPERLLQAILN 374

Query: 694 ILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRG 753
           +L NA+  S   S V +         I  +++ G  I E     +F +F +     +  G
Sbjct: 375 LLDNAIKHSPANSQVSISGYSQGKQAIIQIQDQGKGIKEGDLPRIFEQFYTTDPARKGSG 434

Query: 754 VGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
            GLGL+I +  I  H G +  SS+     T    +P
Sbjct: 435 NGLGLAISKRIIEAHQGSIIASSTSNQGATFTIYLP 470


>gi|229154352|ref|ZP_04282472.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342]
 gi|228629176|gb|EEK85883.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342]
          Length = 463

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 165/437 (37%), Gaps = 39/437 (8%)

Query: 375 KENIFSVYKSSETHKDTWH-LPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLV 433
            E + ++ K   +H+D      + QT+  +        T  +  N     D+  K N + 
Sbjct: 37  NEEMTALLKRGNSHRDVLEKYFDKQTISHVALMESEAETTVVITN--ANKDVLAKSNEIN 94

Query: 434 KVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGT------------HIR 481
                 I+ +         DG I  ++    +   T    +  G              I 
Sbjct: 95  TTIKRHIEKMQ---TRTDHDGAIIENHWKTSNYICTVSPIIVAGKTEGYVYMFLGTASIE 151

Query: 482 NIAATCSRYYNESDGWDLFAAIITSFDDERK------SLQGTLELLSDSVLEYSIIPLPN 535
            +    +R +  + G       IT F   R        ++   E +S   L  S+     
Sbjct: 152 EMVNGLTRQFIIAGGITFLLTAITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSL----- 206

Query: 536 AQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLK 595
                T     +      ++      L      ++ F+  V++ELR+PLT + G+ D+  
Sbjct: 207 -----TTTRNDEIGELASSIQTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADI-- 259

Query: 596 TSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVK 655
            SK  +   ++ +Y+  I   S  + NLV D+  LA ++     +    + L+  L  + 
Sbjct: 260 ASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIC 319

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
           + +     E  I++       L     D QR  Q+   IL+NA   S + S + +    +
Sbjct: 320 EKVNAMYKERYIKVSFSCPSTLL-VNLDEQRFEQVVVNILNNAYRHSKEYSLIHISVTEE 378

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVS 773
           +     ++++ G  IP +    +F+RF            G GLGLSIV+  + LHGG+++
Sbjct: 379 HKSISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRATGGTGLGLSIVKEIVELHGGNIT 438

Query: 774 ISSSDEGVTTINCRIPS 790
           ++S  +  +     +PS
Sbjct: 439 VTSEVDHGSCFTISLPS 455


>gi|288940785|ref|YP_003443025.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896157|gb|ADC61993.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1053

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 11/250 (4%)

Query: 547 DSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
           +  + E  L  + E    A   K++F+ ++S+E+R+P+  I+G T LL+        + Q
Sbjct: 425 ELRQLEVELAHRAELAESATRAKSAFLANMSHEIRTPMNAILGLTHLLRR---DGATATQ 481

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
           ++ +  I +++  LL ++NDILDL+ +++G ++L  +   L  LL++V+  +A       
Sbjct: 482 NERLGKIESATRHLLAILNDILDLSRIESGRLQLEDADFALESLLDQVRSLVADAAQSKG 541

Query: 667 IRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD----FIFS 722
           + + + S G       D  RL QI     SNA+ F+ +GS V+        D      F 
Sbjct: 542 LTLSIESTGLPRWLHGDVTRLRQILLNYASNAVKFTERGSVVLRARPVAEDDSGVLVRFE 601

Query: 723 VKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVGLGLSIVESFINLHGGHVSISSSDEG 780
           V + G  I  +   S+F  F        RR  G GLGL+I      L GG     S+   
Sbjct: 602 VADTGIGIAPEQLASLFRAFSQADSSTTRRYGGTGLGLAINMQLAQLMGGETGAESTPGV 661

Query: 781 VTTIN--CRI 788
            +T     R+
Sbjct: 662 GSTFWLQVRL 671


>gi|89895321|ref|YP_518808.1| hypothetical protein DSY2575 [Desulfitobacterium hafniense Y51]
 gi|89334769|dbj|BAE84364.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 601

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 146/364 (40%), Gaps = 34/364 (9%)

Query: 429 YNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
            +    +    ++ +S+GV +   +G I  +N   ++LW+   +          + A   
Sbjct: 270 LSEERNLLLGIVEGISDGVIMLDGEGEILYTNEPAKALWQGSGSEEESSERKETLMAFLR 329

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
            +  +    ++   I  + D +   +        D               +    ++T S
Sbjct: 330 GFMED---VEIDKKIHFNLDTQVLQVAMATTQFEDG----------KQGYVAVLRDITAS 376

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
           +RAE+               +  F+  V++ELR+PL  I G+ + ++   +     +Q++
Sbjct: 377 LRAEKE--------------RRDFMASVTHELRTPLHLIQGYLEAIQDGVIAK--EEQTE 420

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
           +++ +   +  L  LV ++ +L   ++         I L   + E+      +  E  I 
Sbjct: 421 HIDLVLEEAKRLAKLVMELQELDRFESWK-NFEKKEIDLAGFIQELGYRFQGRADELGIH 479

Query: 669 IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
           +++  D   G   A+R RLLQ+F  ++ NA   + +G +V ++         F+V++ G 
Sbjct: 480 LQM--DNGKGVIHANRDRLLQVFINLIENAFRHTPEGKSVYIRIIDSEEHIQFNVEDQGE 537

Query: 729 SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP      +F+RF        R   G+GLGLSIV   +  H G + + S     TT   
Sbjct: 538 GIPPQALPHIFDRFYRVDKSRSRKEGGMGLGLSIVMLIVEAHNGEIKVESEVGKGTTFKV 597

Query: 787 RIPS 790
            +P 
Sbjct: 598 ILPK 601



 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 34/164 (20%)

Query: 301 VNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           ++++      I+  ++  + + D    + + N     LW+   +   ++   + L+ FLR
Sbjct: 270 LSEERNLLLGIVEGISDGVIMLDGEGEILYTNEPAKALWQGSGSEEESSERKETLMAFLR 329

Query: 361 SANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHV--IVTSNPRG--GTIWMF 416
                                 +  E  K      + Q L V    T    G  G + + 
Sbjct: 330 -------------------GFMEDVEIDKKIHFNLDTQVLQVAMATTQFEDGKQGYVAVL 370

Query: 417 ENLTVQVDLET-----------KYNTLVKVQGETIDHLSEGVAV 449
            ++T  +  E            +  T + +    ++ + +GV  
Sbjct: 371 RDITASLRAEKERRDFMASVTHELRTPLHLIQGYLEAIQDGVIA 414


>gi|126666055|ref|ZP_01737035.1| sensory box histidine kinase/response regulator [Marinobacter sp.
           ELB17]
 gi|126629377|gb|EAZ99994.1| sensory box histidine kinase/response regulator [Marinobacter sp.
           ELB17]
          Length = 737

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 110/609 (18%), Positives = 224/609 (36%), Gaps = 63/609 (10%)

Query: 220 ISYKKNTETEGIVFQKAIGESRKLFKEEIKKRMISSSALEKN----FCETVSTLEHGNNK 275
            ++      + I   +A  E  +  ++ +  R+ S +A +      F  +V   E    +
Sbjct: 12  QAHPNAALIQRIDLLEAENERLRKIRDALIVRVESGTAHKPEPYAAFEHSVVLAEQVRER 71

Query: 276 SYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSF 335
           +  +   ++    +  A++ ++E           + + ++     +FD    L   N  F
Sbjct: 72  TEALNDAMDELRNSNKALNRAREEA-ETTRQRLSDAIESIADGFVLFDHRHLLVQSNSRF 130

Query: 336 VELWE-IDLAFLATNPSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHL 394
              W    +A  A   S + + E   ++  + E+             ++  ++    + L
Sbjct: 131 RSYWRHAGVAMPAAGTSIEAVRELAFASGLIVEE-------------HREPDSDGVVFLL 177

Query: 395 PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYN-----TLVKVQGETIDHLSEGVAV 449
            N + + +       GG + ++ ++T   + E            +      DH+   +A 
Sbjct: 178 SNERWVQMTERPTREGGLVVLYSDITDVKNSEMARRIKALEESERWIRVVTDHVPALIAY 237

Query: 450 FGPDGRIKLSNPAFRSLWK------------------TEENRLSPGTHI---RNIAATCS 488
            G D  I+  N  + + +                     +  L     +    N+     
Sbjct: 238 VGADLSIQFCNQVYEAWYGRNGESPLGKRLDHVHSDEFYQRLLPQMLEVLAGHNVNFEFE 297

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
               E     +  + + +F DE+  + G   L+ D + E     L   Q      +  + 
Sbjct: 298 ETGEEGQVGHMLRSYVPNF-DEQGDVVGFFVLIRD-ITERRKTALALEQA----YDDLER 351

Query: 549 VRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQ 606
              ER  ALTE  +   +A+  K  F+  VS++L  PL     FT  L     G      
Sbjct: 352 RIKERTSALTEAKQEAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALLEQSFGPRAESL 411

Query: 607 SQYVEYISASSTILL-NLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHEN 665
            + V         LL  LV    D++ +DAG++K + +   L DLLN + +         
Sbjct: 412 VRSVSTSLDDVESLLGTLV----DISKLDAGVIKPDVTAFDLRDLLNNIARECQQMAIAE 467

Query: 666 NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKN 725
           ++ +  +    +    +D Q L +I    L+NA+ ++S G  ++L   R  G  +  V +
Sbjct: 468 DLVLDFVPSSAI--VESDSQLLARILRNFLTNAIRYTSSG-RILLGCRRQTGHVLVQVWD 524

Query: 726 NGSSIPEDMCKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
            G  IP D    +F  F  +        +G+GLGL+IV+    +    +++SS +   + 
Sbjct: 525 TGPGIPHDKLGEIFQEFKRIRPEGSRPDKGLGLGLAIVDKIARMLDHDITVSSVEGKGSV 584

Query: 784 INCRIPSKE 792
            + R+P  +
Sbjct: 585 FSVRVPLGQ 593


>gi|298248411|ref|ZP_06972216.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551070|gb|EFH84936.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 485

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 183/510 (35%), Gaps = 41/510 (8%)

Query: 295 VSKEITVNDQLTHTYEIL-HNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSND 353
           +SK          + + L   +   +     +    + NR ++    +   F        
Sbjct: 1   MSKIKQTRRVTPPSGDTLIETIPQLVWTARPDGLHDYTNRRWLNYTGL--TFEQVRHDKW 58

Query: 354 ELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQT-------LHVIVTS 406
             L+F+          + +  +  +     + ET++    L N QT       + V  + 
Sbjct: 59  AQLQFIH-------PDDREGTQALVQHALDTGETYEHEDRLRNSQTGEYRWFLVRVEPSR 111

Query: 407 NPRGGTI---WMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAF 463
           N  G  +       ++  Q  +E       +     +     G+ V   D +I  +N  F
Sbjct: 112 NEAGQIVKWVGTGTDIDEQKRIEAALRPGQERADALMKSKIIGIFVSEGD-QIMDANDTF 170

Query: 464 RSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSD 523
             +       L  G  +  +      Y   +       A   S     K           
Sbjct: 171 LRMTGYTREDLRAG-RLNWLQMAPLEYLARTQQAHQELATQHSLTPYEKEYLCQ----DG 225

Query: 524 SVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSP 583
           S L   +  +      L  +N      A + L          ++ K+ F+   S+EL++P
Sbjct: 226 SRLPVLVCGVLLQDHPLQVINFVLDNSARKEL----------EQRKDDFISMASHELKTP 275

Query: 584 LTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYS 643
           LT +   T L++         + +  +  +      L  L+ ++LD++ + AG ++    
Sbjct: 276 LTAVKIQTQLVRKRLEKHAQHEAATALSRVEGPVKQLERLIAELLDVSKIQAGRLEYIRE 335

Query: 644 TIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSS 703
            + L++L+  V  ++      + I   ++      S + DR  L Q+F+ +LSNA+ ++ 
Sbjct: 336 RVDLDELVRGVIDTLQHTSPSHTI---LVRGSVQTSLIGDRDWLRQVFTNLLSNAIKYAP 392

Query: 704 KGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIV 761
              TV ++ +  +      V ++G  IP +    +F RF   A   +    G+G+GL IV
Sbjct: 393 DAKTVEVELSASDEVVTIQVTDHGLGIPREQRDKIFERFYRAADLRQSAIPGLGMGLYIV 452

Query: 762 ESFINLHGGHVSISSSDEGVTTINCRIPSK 791
              +  HGG +++ S     +T     P+K
Sbjct: 453 AEIVKGHGGTITVDSEVGKGSTFTVTFPTK 482



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 79/254 (31%), Gaps = 32/254 (12%)

Query: 197 VLFDSLDFLVWHRDQAGDILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK------ 250
            L +++  LVW     G   + N  +   T       +       +    + ++      
Sbjct: 17  TLIETIPQLVWTARPDGLHDYTNRRWLNYTGLTFEQVRHDKWAQLQFIHPDDREGTQALV 76

Query: 251 RMISSSALEKNFCETVSTLEHGNNKSY--KIVRVLNSFGE----AGIAIDVSKEITVNDQ 304
           +    +       + +   + G  + +  ++    N  G+     G   D+ ++  +   
Sbjct: 77  QHALDTGETYEHEDRLRNSQTGEYRWFLVRVEPSRNEAGQIVKWVGTGTDIDEQKRIEAA 136

Query: 305 LTHTYEILHNL----TVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLR 360
           L    E    L     + I + + ++ +   N +F+ +       L            L 
Sbjct: 137 LRPGQERADALMKSKIIGIFVSEGDQIMD-ANDTFLRMTGYTREDLRAG--------RLN 187

Query: 361 SANKLP-EQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV-----TSNPRGGTIW 414
                P E L          +   S   ++  +   +G  L V+V       +P     +
Sbjct: 188 WLQMAPLEYLARTQQAHQELATQHSLTPYEKEYLCQDGSRLPVLVCGVLLQDHPLQVINF 247

Query: 415 MFENLTVQVDLETK 428
           + +N + + +LE +
Sbjct: 248 VLDN-SARKELEQR 260


>gi|291515688|emb|CBK64898.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 499

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 127/238 (53%), Gaps = 5/238 (2%)

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
             E  L    E   ++D +K++F+ ++S+E+R+PL  I+GF+ L+++ +L     ++++Y
Sbjct: 237 EREGQLVVAREKAEESDMLKSAFLANMSHEIRTPLNAIVGFSSLMQSEELSQ--EERAEY 294

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
              + ++S +LL L+NDILD+++++ G ++ NY++  +  +   V  + A    +  +  
Sbjct: 295 CAIVVSNSEMLLTLLNDILDISSLECGKIRFNYASEDIVQICQHVMMTTAHT-RQRGVEG 353

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI-LKAARDNGDFIFSVKNNGS 728
           +            D  RL QI   +L+NA  F+S+GS  + ++   + G+ +FSV + G 
Sbjct: 354 RFACPVGSFMLTTDAHRLSQILINLLTNAGKFTSEGSITLGVEIDEERGEVLFSVADTGP 413

Query: 729 SIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
            IP D    VFNRF       +++G GLGL+I      + GG + + S+  G T    
Sbjct: 414 GIPPDKQDLVFNRFEKLDGN-KKKGTGLGLAICRQIAMIVGGRIWVDSAYTGGTRFVF 470


>gi|323498876|ref|ZP_08103859.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315988|gb|EGA69016.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 710

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 121/273 (44%), Gaps = 10/273 (3%)

Query: 525 VLEYSIIPLPNAQTMLTFVNVTDSVRAERA--LTEKNEALRKADEIKNSFVQHVSYELRS 582
           +L  S++ +     M    +       ER+  L +      ++ E K  F+ ++S+E+R+
Sbjct: 193 ILVCSLVMIGIISWMYWNQSKLSQTLKERSDNLEQARLQAEQSAEAKARFLANMSHEMRT 252

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PL  +IG +         + + +   +   I++S   LL L+N +LDL+ ++ G ++L  
Sbjct: 253 PLNAVIGLSQ---KEYYKACDEQTKNFASLINSSGQHLLKLINSVLDLSKIEQGKIQLEE 309

Query: 643 STIVLNDLLNEVKQSIATKMHEN-NIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDF 701
                ++L++  +         + ++      D       AD+ +LLQ+ + +  NA+ F
Sbjct: 310 ERFYCSELIDASRTIFIEMSKPDVDVFFSTEIDAD-YQLCADKTKLLQVINNLSFNAVKF 368

Query: 702 SSKGST-VILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHR--GQRRGVGLGL 758
           +S G   V +         + ++ + G  +  +    VFN F         Q  G GLGL
Sbjct: 369 TSYGYVEVKIAVDPLMKQLVLTINDTGIGMTPEQLDKVFNEFTQADDSITRQYGGTGLGL 428

Query: 759 SIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
           SI +S + L GG +S+ S  +  T+    +P K
Sbjct: 429 SICQSLVTLMGGKISVESETQKGTSFVVSMPIK 461


>gi|325922850|ref|ZP_08184575.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
 gi|325546663|gb|EGD17792.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
          Length = 1149

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 167/404 (41%), Gaps = 21/404 (5%)

Query: 401  HVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSN 460
             +++TS  RG  + + E + V  +   +     ++   T++++S  V+V  P+ R+   N
Sbjct: 604  RLVLTSLLRGSGMELGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPEMRLTAWN 663

Query: 461  PAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLEL 520
              ++ L+   +  L  G  + ++    +      +G D    I       R       E 
Sbjct: 664  RRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEG-DTEDQIDRRIRHMRAGSPHVFER 722

Query: 521  L--SDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-----------DE 567
                  V+E     LP    + ++ ++TD  RAERAL + NE L +             +
Sbjct: 723  TRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSREAELAQQ 782

Query: 568  IKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDI 627
             K  F+  +S+++  PL     F   L+ S     N +Q    E + AS      L++ +
Sbjct: 783  SKTRFLAAISHDVLQPLNAARLFASALRESHQN--NEEQRHLAERVDASLRAAEELLDGL 840

Query: 628  LDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRL 687
            LD++ +DAG ++        + L++E+    A       ++++V S  +     +DR+ L
Sbjct: 841  LDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVASSRGLQLQVHS--RALWVRSDRRLL 898

Query: 688  LQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRF--VSN 745
             ++    L+NA+ ++ +G  ++L            V + G  IPE   + +F  F     
Sbjct: 899  RRVMQNFLANALRYTRQG-RIVLGMRGRGEQVELQVWDTGPGIPEHHMRQIFEEFRRYQQ 957

Query: 746  AHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
                  +G+GLGLSI +    L    +S  S     +  +  +P
Sbjct: 958  PFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLP 1001



 Score = 83.8 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 71/209 (33%), Gaps = 4/209 (1%)

Query: 233 FQKAIGESRKLFKEEIKKRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEA--- 289
             +A  +   L + E++  +++  A  +     ++      +    +  +L   G     
Sbjct: 561 AHRAFVDQAVLLERELQPTVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMELGE 620

Query: 290 GIAIDVSKEITVNDQLTHTYEILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATN 349
            +A+       +          L N++ A+++ D    L   NR + +L+      L   
Sbjct: 621 VVAVLDEAGQELRFNREILSTTLENISAAVSVVDPEMRLTAWNRRYQQLFGYPDGMLYVG 680

Query: 350 PSNDELLEFLRSANKLPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPR 409
               +L+ +     +L E  + +   +      ++   H       +G+ + +   + P 
Sbjct: 681 RPVADLIRYNAERGELGEG-DTEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPG 739

Query: 410 GGTIWMFENLTVQVDLETKYNTLVKVQGE 438
           GG +  + ++T     E       +   +
Sbjct: 740 GGYVTSYNDITDYKRAERALLDANENLEQ 768


>gi|315129764|gb|EFT85754.1| Histidine kinase [Staphylococcus aureus subsp. aureus CGS03]
          Length = 583

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 158/397 (39%), Gaps = 44/397 (11%)

Query: 403 IVTSNPRGGTIWMFENLTVQVDLETKYNTLVK---VQGETIDHLSEGVAVFGPDGRIKLS 459
           + T +  G     F  ++ ++  E   + L     ++   I+ + EGV       +I LS
Sbjct: 224 VTTKDEIGQLSQAFNQMSTEI--EEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILS 281

Query: 460 NPAFRSLWKTEENRLSPG--THIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGT 517
           N     +    +          I +   +      + +    F  + TS+ D+       
Sbjct: 282 NKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDK------- 334

Query: 518 LELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVS 577
           +E    S +  ++  + N   +                          D++K  F+ +VS
Sbjct: 335 IEQGGKSGVVVTVRDMTNEHNL--------------------------DQMKKDFIANVS 368

Query: 578 YELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGI 637
           +ELR+P++ + G+T+ +    +   + +  + +  +   S  L  LVN++L++A +DA  
Sbjct: 369 HELRTPISLLQGYTESIVDGIVTEPD-EIKESLAVVLDESKRLNRLVNELLNVARMDAEG 427

Query: 638 MKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSN 697
           + +N     +  LL+++K     +  +  + +      K      D  R+ Q+ + ++ N
Sbjct: 428 LSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSY-DMDRMDQVLTNLIDN 486

Query: 698 AMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR--GVG 755
           A  ++  G  + +    +  + I  +K+ G+ I  +  + VF+RF        R   G G
Sbjct: 487 ASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTG 546

Query: 756 LGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSKE 792
           LGL I +  I  HGG + + S     TT   ++P  E
Sbjct: 547 LGLFICKMIIEEHGGSIDVKSELGKDTTFIIKLPKPE 583


>gi|254427119|ref|ZP_05040826.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196193288|gb|EDX88247.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 1118

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 120/254 (47%), Gaps = 6/254 (2%)

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
           QT +    +    + + AL    E    A++ K+ ++  +S+ELRSPL    G+  LL+ 
Sbjct: 639 QTRMLMEEIKAHEKTDLALQAAKELAEAANQAKSRYLTGLSHELRSPLNAAFGYAQLLEQ 698

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQ 656
               S+   +   +  I  S+  L +L+  +L+++ ++AG ++L  + + + +L++E+  
Sbjct: 699 DP--SIPENRRDAIGAIRRSTEHLSDLIEGLLEISKIEAGRLELYRNQVCVPELIDELVT 756

Query: 657 SIATKMHENNIRIKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARD 715
               +  E  I  +  S  ++ ++V  D +RL QI   +LSNA+ F+ +G  V L     
Sbjct: 757 MFQLQAAEKGIGFEFRSKSQMPTWVTTDEKRLRQILINLLSNAIKFTREG-LVTLTFRYR 815

Query: 716 NGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRG--QRRGVGLGLSIVESFINLHGGHVS 773
           N    F + + G  I E+  K +F  F      G     G GLGL+I +   ++ GG + 
Sbjct: 816 NQVAEFVIADTGVGIDEEDLKRIFRPFERVRKPGIPSVHGTGLGLTITQLLADIMGGDIQ 875

Query: 774 ISSSDEGVTTINCR 787
           +SS     +     
Sbjct: 876 VSSVPGQGSEFRLS 889


>gi|209549672|ref|YP_002281589.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535428|gb|ACI55363.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 511

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 4/237 (1%)

Query: 559 NEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISASS 617
                +A+  K+ F+  +S+ELR+PL  I+GF++++    +G L N    +Y   I  S 
Sbjct: 252 RRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLANPTYKEYAGDIHRSG 311

Query: 618 TILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKL 677
             LL+L+N+ILDL+ ++AG  +L+   I L D+  +    +  +    NI I    + +L
Sbjct: 312 QHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRARAKNIAISDQFERQL 371

Query: 678 GSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKA-ARDNGDFIFSVKNNGSSIPEDMCK 736
            +  AD + + Q+   +LSNA+ F+ +G  + +K      G    S+K+NG  IPE+   
Sbjct: 372 PAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYISIKDNGPGIPEEEIP 431

Query: 737 SVFNRFVSNA--HRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPSK 791
            V + F   +   +   +G GLGL IV++ +  H G   + S     T +   +P+K
Sbjct: 432 VVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLREGTEVIAILPAK 488


>gi|158334668|ref|YP_001515840.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304909|gb|ABW26526.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 546

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/422 (20%), Positives = 169/422 (40%), Gaps = 15/422 (3%)

Query: 377 NIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFE-NLTVQVDLETKYNTLVKV 435
            I +  +      +   L       V   +          E  +  +   E         
Sbjct: 118 RIRNQLEIQFAKAEIESLNAELEQRVQERTAELTAVTVTLEKQIQERQKAEQALRHSESR 177

Query: 436 QGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCSRYYNESD 495
               I++ S+ + +  P G +  S+P+           L   + +  +        ++S 
Sbjct: 178 FRAMIENASDLILLLDPQGIVHYSSPSVERNLGYLPTDLQGQSLVHLLHPQ-----DQSS 232

Query: 496 GWDLFAAIITSFDDERKSLQGTLELLSDSV--LEYSIIPLPN----AQTMLTFVNVTDSV 549
              L A ++ +       L+   +  +     LE       +    +  ++   ++T+  
Sbjct: 233 ITQLLAEVLATPSKVAVPLEIRWQHQAGHWCTLEAMAQQFSDTTGFSGIVVNARDITERQ 292

Query: 550 RAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQY 609
           + E A+    E  ++  E+K  F    S+E R+PL+ I+    +L +S+  SL++KQ + 
Sbjct: 293 KME-AMQRALEQEQELSELKLRFFSMASHEFRTPLSVILMAAQILGSSESQSLDNKQQRN 351

Query: 610 VEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRI 669
           +E I  S+  L  ++ DILD+A ++A   + N   + +  + + +  +  T  H    RI
Sbjct: 352 IERIHTSAQYLKKMLADILDIARLEAQKREFNPRPVCVKTMCDRILDTQQTS-HGGIPRI 410

Query: 670 KVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSS 729
           +    G       D      I + +L+NA+ +S+    V +K  ++       + + G  
Sbjct: 411 RCAYTGLSAEIALDPDLFQSILNNLLANALKYSAPEQLVQVKLTQELDQIELMIIDQGIG 470

Query: 730 IPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789
           IP+     +F  F    + G+  G GLGL+IV+  ++LHGGH+S  S     TT   R+P
Sbjct: 471 IPKASQSQLFEAFHRGDNVGEIEGSGLGLAIVKKCVDLHGGHLSFVSEA-SGTTFTVRLP 529

Query: 790 SK 791
            +
Sbjct: 530 IQ 531


>gi|461403|gb|AAA98756.1| sensor kinase [Pseudomonas fluorescens]
          Length = 575

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/427 (19%), Positives = 170/427 (39%), Gaps = 9/427 (2%)

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
           +  T  E++  + +   +    W++   + L    + +   GT+  F ++T +   E + 
Sbjct: 4   DAATVFESLSMIEREVNSDDQRWYIA--RLLPYRSSEDHIDGTVLTFIDITKRRLAEEEL 61

Query: 430 NTLVKVQGETIDHLSE-GVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS 488
               +      +   +  + +    G I   N   + ++   ++ +  G +   I A   
Sbjct: 62  RLGEERMRLVAESTHDFAIIILDNQGLITDWNTGAQLIFGYTKDEVL-GAYYDLIFAPED 120

Query: 489 RYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDS 548
           R     +   L A      DDER  ++   E    S     +        +    ++T  
Sbjct: 121 RAGGVPESELLTAREHGRSDDERWHIRKDGERFFCSGEVTRLKGDSLQGYVKIARDLTGH 180

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
            R +    +K    +    +K+ F   +S+EL+ PL  I    +LL+        +   +
Sbjct: 181 KRMQDEQNQKLMETQTHSHLKDEFFAVMSHELKHPLNLIQLNAELLRRLPTTKAAAPALK 240

Query: 609 YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
            V  I  + +    +++D+LD+  +  G +KL    + L  +L ++   + ++ H   + 
Sbjct: 241 AVNTICEAVSSQARIIDDLLDVRRLRTGKLKLKKQPVDLGRILQDIHTVVLSEGHRCQVT 300

Query: 669 IKVISDGKLGSFV-ADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           ++V    +    + AD  RL Q+   +++NA+ F+     V L A R        V ++G
Sbjct: 301 LQVPLPPQPPLMIDADATRLEQVIWNLVNNALKFTPANGLVQLIAQRVEDKAHVDVIDSG 360

Query: 728 SSIPEDMCKSVFNRFVSNAH---RGQRRGVGLGLSIVESFINLHGGHVSISSSD-EGVTT 783
             + E+    VF+ F   A+     QR G+G+GLS+V   +  HGG VS+ S       T
Sbjct: 361 VGLAEEDQNKVFDLFGQAANQHGTHQRDGLGIGLSLVRQLVEAHGGSVSVQSKGLGQGCT 420

Query: 784 INCRIPS 790
               +P 
Sbjct: 421 FTVLLPL 427


>gi|56413637|ref|YP_150712.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362561|ref|YP_002142198.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127894|gb|AAV77400.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094038|emb|CAR59534.1| putative two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 920

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 121/259 (46%), Gaps = 9/259 (3%)

Query: 537 QTMLTFVNVTDSVRAER--ALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
            T+    +  ++  AER  AL E  +   +A++ K+  +  +S+ELR+P+  ++G  +LL
Sbjct: 362 DTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELL 421

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
           +T+    LN +Q    +     +  LL ++N++LD + +++G   L      L  LL++ 
Sbjct: 422 QTT---PLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLRMEETALLPLLDQA 478

Query: 655 KQSIATKMHENNIRIKVISDGKLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAA 713
            Q+I        + ++      +   F  D  RL QI   +L NA+ F+  G  + L   
Sbjct: 479 MQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG-IRLTVK 537

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
           R     IF V ++G  I       +F  F         +G G+GL+I  S   + GG+++
Sbjct: 538 RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQAD--TNSQGTGIGLTIASSLAKMMGGNLA 595

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     T ++  +P +E
Sbjct: 596 LKSVPGVGTCVSLVLPLQE 614


>gi|77457887|ref|YP_347392.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
            Pf0-1]
 gi|77381890|gb|ABA73403.1| putative transmembrane two-component system, sensor kinase/regulator
            hybrid [Pseudomonas fluorescens Pf0-1]
          Length = 1156

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/486 (18%), Positives = 187/486 (38%), Gaps = 44/486 (9%)

Query: 337  ELWEIDLAFLATNPSNDELLEFLRSANKL--PEQLNWKTWKENIFSVYKSSETHKDTWHL 394
            +L ++   F+    +    + F     K   P Q     W  +   +         T   
Sbjct: 546  DLLQLAARFVGEERARQSFIRFAYRQGKGFNPNQNADGEWIAHTERLLAGVLGASST--- 602

Query: 395  PNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDG 454
                    +V +   G  + + + + +  +          +    I+++++G++V     
Sbjct: 603  ------RAVVKAAIEGREMQLEDVVRIADEASEVLQFNRALLQGAIENITQGISVVDQSL 656

Query: 455  RIKLSNPAFRSLWKTEENRLSPGTHIRNIAATCS-RYYNESDGWDLFAAIITSFDDERKS 513
            ++   N  +  L+   +  +S G  I +I    + R        ++  A    +  + ++
Sbjct: 657  KLVAWNRRYLELFNYPDGLISVGRPIADIIRHNAERGLCGPGEAEVHVARRLHWMRQGRA 716

Query: 514  LQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKA-------- 565
                    +  V+E    P+P    +++F ++T    AE+ALTE NE L +         
Sbjct: 717  HTSERLFPNGRVIELIGNPMPGGGFVMSFTDITAFREAEQALTEANEGLEQRVSERTQEL 776

Query: 566  -----------------DEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQ 608
                             ++ K  F+  VS++L  PL     F+  L     G L+ +  +
Sbjct: 777  SQLNVALTEAKGNAEAANQSKTRFLAAVSHDLMQPLNAARLFSAALSHQADG-LSEEAQK 835

Query: 609  YVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIR 668
             V+++ +S     +L++D+LD++ ++ G +  +     +N+L + +         E  + 
Sbjct: 836  LVQHLDSSLRSAEDLISDLLDISRLENGKINPDRKPFAVNELFDILGAEFKALAQEQGLS 895

Query: 669  IKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGS 728
             +V   G      +D + L +I    L+NA  ++     V+L   R  G+    V + G 
Sbjct: 896  FRVR--GSQLRIDSDIKLLRRILQNFLTNAFRYAK--GPVLLGVRRRKGEICLEVWDRGP 951

Query: 729  SIPEDMCKSVFNRFVSNAHRGQR--RGVGLGLSIVESFINLHGGHVSISSSDEGVTTINC 786
             IPED  + +F  F        R  +G+GLGL+I +    + G  + + S     +  + 
Sbjct: 952  GIPEDKQQVIFEEFKRLDSHQTRAEKGLGLGLAIADGLCRVLGHTLRVRSWPGRGSVFSV 1011

Query: 787  RIPSKE 792
            R+P  +
Sbjct: 1012 RVPLAK 1017



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 16/217 (7%)

Query: 250 KRMISSSALEKNFCETVSTLEHGNNKSYKIVRVLNSFGEAGIAIDVSKEITVNDQLTHTY 309
           +R+++      +    V     G  +  ++  V+       IA + S+ +  N  L    
Sbjct: 590 ERLLAGVLGASSTRAVVKAAIEG--REMQLEDVVR------IADEASEVLQFNRALLQGA 641

Query: 310 EILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANKLPEQL 369
             + N+T  I++ DQ+  L   NR ++EL+      ++      +++             
Sbjct: 642 --IENITQGISVVDQSLKLVAWNRRYLELFNYPDGLISVGRPIADIIRHNAERGLCG-PG 698

Query: 370 NWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIVTSNPRGGTIWMFENLTVQVDLETKY 429
             +          +    H      PNG+ + +I    P GG +  F ++T   + E   
Sbjct: 699 EAEVHVARRLHWMRQGRAHTSERLFPNGRVIELIGNPMPGGGFVMSFTDITAFREAEQAL 758

Query: 430 NT----LVKVQGETIDHLSE-GVAVFGPDGRIKLSNP 461
                 L +   E    LS+  VA+    G  + +N 
Sbjct: 759 TEANEGLEQRVSERTQELSQLNVALTEAKGNAEAANQ 795


>gi|167762401|ref|ZP_02434528.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC
           43183]
 gi|167699507|gb|EDS16086.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC
           43183]
          Length = 923

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 114/233 (48%), Gaps = 2/233 (0%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
             + + + + ++ K  F  ++S+E+R+P+T II   DLL  S  G L++     +  I  
Sbjct: 387 MREKQYIEEMNQSKLRFFTNISHEIRTPITLIISQVDLLLNS--GKLSTYAYSKLLNIHK 444

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           ++  L +L++++LD    + G++KL  S   L DLL E            NI   +  + 
Sbjct: 445 NAGNLKSLISELLDFRKQEQGLLKLKISQFDLCDLLQEHFVLFKELSANRNISFSLHMNV 504

Query: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIPEDMC 735
           +      DR +L ++ + +LSNA  ++S G T++L     +    FSV +NG+ I E+  
Sbjct: 505 QHCMIWGDRMQLQKVINNLLSNAFKYTSDGGTIVLGFTEKDMVCRFSVTDNGAGISEEDY 564

Query: 736 KSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           + +F RF    + G   G G+GL++ +  +  H G +++ S     +     +
Sbjct: 565 QKIFERFYQVENIGLYGGTGIGLALTQGIVKAHKGEINVKSQLGKGSCFQVTL 617


>gi|312793632|ref|YP_004026555.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180772|gb|ADQ40942.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 467

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 11/259 (4%)

Query: 531 IPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGF 590
           IP+PN        +  +      +     E L   + ++ SF+ +VS+ELRSPLT+I GF
Sbjct: 216 IPIPN-------NSDDEISELISSFNYMTEKLENLEMMRKSFIFNVSHELRSPLTSIRGF 268

Query: 591 TDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDL 650
            + +    +   + K+  Y+  +      L NL+N +L+L+ ++ G + LN S   +  +
Sbjct: 269 VEGILDKTIP--DDKRDFYLTLVKEEVIKLNNLINQLLELSRLEWGKINLNLSEFKIYSV 326

Query: 651 LNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVIL 710
           + E       ++ E  I + +  D +L    ADR  + ++   +L NA+ ++  G  + +
Sbjct: 327 IAEELIKFEKRIEEKEIDVTLQVDEEL-VVKADRDLISRVVHNLLDNAIKYNKVGGKIYI 385

Query: 711 KAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHG 769
            +   NG    ++++ G  IPE + K ++ RF           GVGLGLSIV+  I LH 
Sbjct: 386 YSEVVNGKAYITIQDTGVGIPEKLQKLIWERFYKVDESRSLENGVGLGLSIVKEIIKLHK 445

Query: 770 GHVSISSSDEGVTTINCRI 788
            ++ + S +   +     +
Sbjct: 446 QNIWVESEEGVGSKFTFTL 464


>gi|312126308|ref|YP_003991182.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776327|gb|ADQ05813.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 566

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 141/385 (36%), Gaps = 66/385 (17%)

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           T      ++     +     + ++S+GV        I   N + +   K           
Sbjct: 232 TNVKKYISELEFEKQKLERILQNMSDGVLAVNSKNEIIHINESAKKFLKG---------- 281

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTM 539
             ++        ++ D                  +   +  +    LE S     ++   
Sbjct: 282 --DVERFLEHVQSDKDW----------------GVTQHIYEVDGWTLEISTAAFIDSYQG 323

Query: 540 LTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKL 599
              + +   +  +  L          D+++  FV  VS+ELR+P+T I  +++ L     
Sbjct: 324 TGTIFILHDITQQAKL----------DQMRKQFVADVSHELRTPITTIKTYSETLLD--- 370

Query: 600 GSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIA 659
               + + +++  I      +  L++D+L L+ +D+G   L    + +++L+  V + + 
Sbjct: 371 VDDEAVKREFLGVIIKECDRMTRLISDLLYLSRLDSGENILKIEEVNVSELVRFVCEKMR 430

Query: 660 TKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDF 719
               + N ++   ++  +    ADR RL Q+   +++NA+ +  +G  + +   +D    
Sbjct: 431 IHAKKKNQKLLCSAEENV-VIEADRDRLEQVLINLINNAVVYVQEGGQIEVGLEKDEEHV 489

Query: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLS-------------IVESFIN 766
             +VK+NG  IPED    +F RF                +             I +  + 
Sbjct: 490 KITVKDNGPGIPEDDLPRIFERFYRVDK-----------ARSRSLGGSGLGLSIADEIVK 538

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
            HGG + + S +   TT    +P K
Sbjct: 539 AHGGRILVESKEGVGTTFTVVLPVK 563


>gi|328872878|gb|EGG21245.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1240

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 13/294 (4%)

Query: 503 IITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEAL 562
            I    DE  +  G + +  D     +I            +     ++  + L +  +  
Sbjct: 607 FIKELFDENNTSLGFMVVFRDITASKAIQSSLEEANNQLSIKSQLEIQKNKELIDARDRA 666

Query: 563 RKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLN 622
            KA +IK  F   +S+E+R+PL  +IG T++L T+   +L  +Q +  E I  S  IL +
Sbjct: 667 LKAIKIKTQFTATISHEIRTPLNGLIGMTEMLLTT---NLTKEQREIAETIQKSGDILHS 723

Query: 623 LVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGS-FV 681
           + +D+LD + ++   ++L          +     +++    +  I   +  +  +    +
Sbjct: 724 VTSDVLDFSKIEESKLELEMIEFDFIGCIENTLSTLSMSCVDKPIEFLLHFEDNVAIKII 783

Query: 682 ADRQRLLQIFSKILSNAMDFSSKGST---VILKAARDNGDFIF--SVKNNGSSIPEDMCK 736
            D  RL QI   + SNA+ ++++G     V +   R NG      SV++ G  IP +   
Sbjct: 784 GDPIRLRQIILNVGSNAVKYTNQGHIYTHVSI-LERVNGKIKIKVSVEDTGIGIPTEKRD 842

Query: 737 SVFNRFVSNAHR--GQRRGVGLGLSIVESFINLHGGHVSIS-SSDEGVTTINCR 787
            +F  F         +  G GLGL+I +    L  G +++  S +   +T +  
Sbjct: 843 RLFEPFSQVDASITRRYGGTGLGLAICDRLTKLMNGEMTLEKSVEGQGSTFSMT 896


>gi|289424099|ref|ZP_06425885.1| two-component sensor histidine kinase [Peptostreptococcus
           anaerobius 653-L]
 gi|289155524|gb|EFD04203.1| two-component sensor histidine kinase [Peptostreptococcus
           anaerobius 653-L]
          Length = 479

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 116/237 (48%), Gaps = 5/237 (2%)

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEY 612
           R      + ++K++++K+ F+  VS+ELR+PLT+I G+++ L+   +     ++   +  
Sbjct: 237 RTFENMAQEIQKSEKLKDEFISSVSHELRTPLTSINGWSETLQLDNISK--EEELMGLNI 294

Query: 613 ISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVI 672
           I   +  L+ LV ++LD + + +  +KL    + +  L+  V   + +   + N+R+   
Sbjct: 295 IQDEAQRLIKLVEELLDFSRLSSDRIKLQLEPVNIESLVVSVINQLRSIAVDKNLRLSFE 354

Query: 673 -SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNGSSIP 731
             +  + +  AD+ RL Q+   ++ N++ F+ +G  + L+  +       SV + G  I 
Sbjct: 355 FVNQNMQTIYADKNRLRQVLINLIQNSIKFTPEGGNIYLEVDQFTYVTEISVTDTGIGID 414

Query: 732 EDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRI 788
           E     V  +F    +     G GLGL+I E  I LHGG + I S     T I+  I
Sbjct: 415 EQNINKVSKKFFQEDYHKT--GSGLGLAISEEIIKLHGGKMVIKSKKNEGTEISFSI 469


>gi|315502510|ref|YP_004081397.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
 gi|315409129|gb|ADU07246.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
          Length = 1227

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 7/244 (2%)

Query: 549 VRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIG-FTDLLKTSKLGSLNSKQS 607
            RA      +   L   D  K +F  +VS+E R+PLT ++G   ++L   +   L  +  
Sbjct: 329 QRAYEQERARAAELAALDRAKTNFFANVSHEFRTPLTLVLGPMEEMLADRE---LPERYL 385

Query: 608 QYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNI 667
             +  +  +   LL LVN +LD + +++G +   Y    L+D  + +  +  +      +
Sbjct: 386 DRLTVMHRNGLRLLKLVNTVLDFSRLESGRLAARYQPTDLSDYTSRLASTFRSATERAGL 445

Query: 668 RIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVKNNG 727
           R+ V           DR    +I   +LSNA+ F+  G  + ++   D+G  +  V + G
Sbjct: 446 RLVVDCPPLPAPVYVDRDMWEKIVLNLLSNAVKFTFDGE-IRVRVRADDGAAVLEVTDTG 504

Query: 728 SSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTIN 785
             I  +    VF RF     A      G G+GL++V   + + GG V+  S  +  TT  
Sbjct: 505 VGIAPEELPQVFERFHRVAGARSRTHEGTGIGLALVRELVEMQGGTVTAHSVVDRGTTFT 564

Query: 786 CRIP 789
             +P
Sbjct: 565 VTMP 568


>gi|90022853|ref|YP_528680.1| bacteriophytochrome-like protein [Saccharophagus degradans 2-40]
 gi|89952453|gb|ABD82468.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 842

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 126/859 (14%), Positives = 283/859 (32%), Gaps = 107/859 (12%)

Query: 8   IGIGKGIEICTLFSCKIAVFGTIAGMLLTTIIPIILL---IRQRNSLAKKVNETYSFLSE 64
           + +   I +  LF   I  +  +   L  T++  I+    +++R     +     +  + 
Sbjct: 14  LKLNSAIRLIELFHSPITAWVVLGLSLAITVVAYIITSSAVKERAKDRFEYQTIRTENA- 72

Query: 65  ICDQLSKYH-------SLLTENNCLTIV-WDGKDETPEIIGQLHQRIDIPQTDTDLLSFE 116
           I ++L  Y         L   +  +T   +    +  ++  +      I  +        
Sbjct: 73  IKERLYLYEQVLWGGVGLFNASTEVTRADYANYVKALQLDTKWPGVQGIGYSI------- 125

Query: 117 NWLKFHHYIKLSKATEKLRKEGQSFDLVAETQNDCAIKIEG----------RVSGSCAF- 165
                    +L    E +R +G     V  T+                   R  G   + 
Sbjct: 126 ----PIEASQLEAHIEAMRAQGFPEYTVKPTEPREEYSAIIYLEPFDWRNQRAFGYDMWS 181

Query: 166 --LRILSLDGIYSELAETTLKCKKLSNHIS--VFKVLFDSLDF-------LVWHRDQAGD 214
             +R  ++          T     L       V +     +               +   
Sbjct: 182 NPMRREAMARARDNAEAATSGIITLVQETDNNVQRGFLTYVPVYSTRVIPPTVEERRTAF 241

Query: 215 ILWANISYKKNTETEGIVFQKAIGESRKLFKEEIKK--------RMISSSALEKNFCETV 266
           + W    ++     +GI+          ++  + K+                  +  + V
Sbjct: 242 LGWVYAPFRAGNLMQGILGSDDDQIHLDIYDGKTKQPESLLYSSESAPLERNIPDLTKEV 301

Query: 267 STLEHGNN---------KSYKIVR---VLNSFGEAGIAID------VSKEITVNDQLTHT 308
           S    G             Y++V            G+A++      +     +N +    
Sbjct: 302 SITLQGREWTLYFRAVPNYYELVDNGHQPVFIAVGGVAVNLLLFYVIYALYFLNKRAESV 361

Query: 309 YE----ILHNLTVAIAIFDQNRYLQFHNRSFVELWEIDLAFLATNPSNDELLEFLRSANK 364
            +    I+     A+ I ++   +   N     L+      L        +   +R+A+ 
Sbjct: 362 TKDWRMIIEQAPNALIITNETGEIVVTNAQADTLFGYAPNELLGQKIEVLVPHSIRTAH- 420

Query: 365 LPEQLNWKTWKENIFSVYKSSETHKDTWHLPNGQTLHVIV----TSNPRGG-TIWMFENL 419
            PE            S+    +    T    +G  + V +     + P+G   +    ++
Sbjct: 421 -PELRESFVAAPKARSMGAGRDL---TAQRKDGSEVPVEIGLSPLNTPQGRLVVASIVDI 476

Query: 420 TVQVDLETKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRLSPGTH 479
           + +   +           + I+     + +    G I L+N     L+      L+ G  
Sbjct: 477 SERKQAQHTLE-------KIIEQAPNALIMTDDKGTITLTNTQADHLFGYRRGELT-GQK 528

Query: 480 IRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP---NA 536
           I  +    +R  + +     F A  +      + L G  +  S+  +E  + PL      
Sbjct: 529 IDILVPEANRAGHPAHRDAFFKAPKSRLMGAGRDLAGRAKDGSEVPVEIGLNPLTTPLGN 588

Query: 537 QTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKT 596
             + + V++ + +RA++ L   N  L++ +     F+  VS++L+SPL  I GF  +L T
Sbjct: 589 FVVASIVDIKERLRAQKMLEHTNRQLQQKNHEMEQFIYTVSHDLKSPLVTIGGFAKMLST 648

Query: 597 SKLGSLNSKQSQYVEYISASSTILLNLVNDILDLAT-VDAGIMKLNYSTIVLNDLLNEVK 655
               +   KQ   ++ I A+   +  L++D+L L+  +  G   ++ + + L  LL+ + 
Sbjct: 649 GLANTATDKQKHQLQRIQANVDHMETLLSDLLQLSRLIRQG---VDKTEVDLEALLDSLI 705

Query: 656 QSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGS--TVILKAA 713
            ++   +   N ++++     L     + + + Q    +LSNA+ +  +    T+ +  +
Sbjct: 706 NTLEGPIEAVNAKVEICKP--LAIIQGNERLISQCVQNLLSNAIQYKDEQRPLTITISTS 763

Query: 714 RDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVS 773
                    +K+    I     + +F  F          G G+GL+IV++ +  H G V 
Sbjct: 764 EQAESVSLIIKDTAMGIDAKYHEQIFRIFERLDIG---EGTGVGLAIVKTVMEKHSGQVV 820

Query: 774 ISSSDEGVTTINCRIPSKE 792
           + S     +T     P ++
Sbjct: 821 LESELGKGSTFTLVFPKQK 839


>gi|323482860|ref|ZP_08088261.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323403785|gb|EGA96082.1| sensor protein [Clostridium symbiosum WAL-14163]
          Length = 374

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 147/328 (44%), Gaps = 7/328 (2%)

Query: 463 FRSLWKTEENRLSPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLS 522
           +    +  ++ L   T I  +          +     F  ++         +   ++ +S
Sbjct: 37  YLKETRYADSFLLQMTEINTLMVLIYVILGIAVFTVTFLTLLEKALRYIGKISSAIQNIS 96

Query: 523 DSVLEYSIIPLPNAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRS 582
           +  L  ++  + + +     VN+   +   R L +K     +A+  KN  + +V+++LR+
Sbjct: 97  EGDLNTTVEVIGDDEFTQMAVNLNKMMEDIRRLMDKER---EAERTKNELITNVAHDLRT 153

Query: 583 PLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNY 642
           PLT+IIG+ +LL + K+      Q +Y++   A S  L  L+ D+     ++ G M ++ 
Sbjct: 154 PLTSIIGYLELL-SGKVQIPQEMQKKYIDIAYAKSKRLEKLIEDLFGFTKMNYGKMTMHV 212

Query: 643 STIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFS 702
             + +  LL+++ +       + N+  ++ S+       AD   L ++F  +++NA+ + 
Sbjct: 213 GKVDVVKLLSQLLEEFYPSFVDKNLSYELQSNVPGKVITADGNLLARLFDNLINNAIKYG 272

Query: 703 SKGSTVILKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVS--NAHRGQRRGVGLGLSI 760
           + G  V++K          SV N G  IP D    +FN+F     +      G GLGL+I
Sbjct: 273 ADGKRVLVKIQVTEPTVTVSVTNYGYVIPADELPLIFNKFYRVEQSRSTNTGGTGLGLAI 332

Query: 761 VESFINLHGGHVSISSSDEGVTTINCRI 788
            ++ +++HGG + ++S     T    ++
Sbjct: 333 SKNIVDMHGGSIQVTSDLN-GTVFTVKL 359


>gi|300869527|ref|ZP_07114109.1| GAF sensor hybrid histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332500|emb|CBN59307.1| GAF sensor hybrid histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 816

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 31/325 (9%)

Query: 498 DLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLPNAQTMLTFVNVTDSVRAE----- 552
           +L+  +I     E +  + + +     + E+  I +  A+          ++        
Sbjct: 340 ELWGLLIAHQCFEVREWEESKKTFLRQIAEHLAIAICQAELYAELQQQKHTLEQRVIERT 399

Query: 553 RALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL------NSKQ 606
           + L +   A + A   K+ F+  +S+ELR+PLT +IG +  L     G+        SKQ
Sbjct: 400 QELQDALAAAQSASLAKSEFLATMSHELRTPLTCVIGISATLLRWCCGNEANTKIPPSKQ 459

Query: 607 SQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENN 666
             Y++ I  S   LL+L+ DILDL+ V+AG   L  S   L+ +       +  +    +
Sbjct: 460 KNYLQTIHDSGKKLLDLIEDILDLSQVEAGNTALKISEFSLSQVAYLTVADLKEQAAAKH 519

Query: 667 IRIKVI--SDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGD------ 718
           I I +    +     FV D++R+ QI   +L+NA+ F+ KG  V L+ +           
Sbjct: 520 IAIAIEQQIEPGHERFVGDQRRIKQILFNLLTNAIKFTPKGGRVTLRVSVKGEKSIAELR 579

Query: 719 ----------FIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFIN 766
                      +F V++ G  I ++    +F +F       R +  G+GLGL++ +  + 
Sbjct: 580 QNSIKSGGNIAVFQVEDTGIGIAKEQQSLLFQKFKQLDSPYRREYSGIGLGLALTKHLVE 639

Query: 767 LHGGHVSISSSDEGVTTINCRIPSK 791
           LHGG + + S+    +     IP +
Sbjct: 640 LHGGAIEVKSTVGVGSIFTAFIPVQ 664


>gi|89074344|ref|ZP_01160826.1| probable sensor/response regulator hybrid [Photobacterium sp.
           SKA34]
 gi|89049831|gb|EAR55372.1| probable sensor/response regulator hybrid [Photobacterium sp.
           SKA34]
          Length = 460

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 116/261 (44%), Gaps = 22/261 (8%)

Query: 551 AERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYV 610
             R L E+   L +A +IK  F+ ++S+E+R+P+  ++GF   L+   L   + +Q  Y+
Sbjct: 49  LNRKLREQANDLSEAIKIKAEFMANMSHEIRTPMNGVLGFVQCLEERNLDQESQRQIGYI 108

Query: 611 EYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIK 670
                S+  LL ++N+ILD + +++G ++L+ ++  L   ++        +     I++ 
Sbjct: 109 ---KESAYSLLVIINEILDYSKLESGNVELHMTSFNLKPFVHSCATPFIHQAKIKKIQLS 165

Query: 671 VIS-DGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDN------------- 716
               +G   S+ AD  RL QI   ++ NA+ F+  GS  ++   RD              
Sbjct: 166 TELGEGLADSYTADEGRLRQILINLIGNAVKFTHTGSVKLVVEKRDAPEQQCEELKKYND 225

Query: 717 ---GDFIFSVKNNGSSIPEDMCKSVFNRFVSNAH--RGQRRGVGLGLSIVESFINLHGGH 771
                  F VK+ G  I E+    +F+ +         Q  G GLGLSI  S   L    
Sbjct: 226 KHIQWLRFKVKDTGIGIAEEKLAFIFDSYTQADGSISRQFGGTGLGLSISNSLCRLMSAK 285

Query: 772 VSISSSDEGVTTINCRIPSKE 792
           + + S     T     IP K+
Sbjct: 286 LQVESIIGNGTEFWFDIPLKQ 306


>gi|312862820|ref|ZP_07723060.1| PAS domain S-box protein [Streptococcus vestibularis F0396]
 gi|311101680|gb|EFQ59883.1| PAS domain S-box protein [Streptococcus vestibularis F0396]
          Length = 446

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 135/382 (35%), Gaps = 30/382 (7%)

Query: 416 FENLTVQVDLE-TKYNTLVKVQGETIDHLSEGVAVFGPDGRIKLSNPAFRSLWKTEENRL 474
             +L+    L               + ++S+GV      G+I + N   + L    +   
Sbjct: 74  LNDLSDVFRLTHENLAQEKNRLSSVLSYMSDGVIATNRRGQITMINSTAQRLLNL-DRES 132

Query: 475 SPGTHIRNIAATCSRYYNESDGWDLFAAIITSFDDERKSLQGTLELLSDSVLEYSIIPLP 534
           +    I ++    + Y       +L +         R +    + L     + +++I   
Sbjct: 133 ATQMSILDLLDGENPY----TYSELLSKTPEIHLSRRDANDEFVTLR----VNFALIRKE 184

Query: 535 NAQTMLTFVNVTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLL 594
           +         + D+   E+   E+             FV +VS+ELR+PLT++  + + L
Sbjct: 185 SGFISGLVAVLHDATEQEKEERERRL-----------FVSNVSHELRTPLTSVKSYLEAL 233

Query: 595 KTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEV 654
               L         +++     +  ++ +++D+L L+ +D    +L+         +  +
Sbjct: 234 DDGALH--EEIAPNFIKVSLDETNRMMRMISDLLALSRIDNKSTQLDVEMTNFTAFMTYI 291

Query: 655 KQSIATKMHE-----NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVI 709
                    +         I             D  ++ Q+   IL+NA+ +S  G  + 
Sbjct: 292 LNRFDQIKSQETNPGKFYEIIRDYSVNSIWVEIDTDKMTQVVDNILNNAIKYSPDGGKIT 351

Query: 710 LKAARDNGDFIFSVKNNGSSIPEDMCKSVFNRFVSNA--HRGQRRGVGLGLSIVESFINL 767
           +     +   I S+ + G  IP+     +F+RF          + G GLGLSI +  +  
Sbjct: 352 VSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVKQ 411

Query: 768 HGGHVSISSSDEGVTTINCRIP 789
           H G +   S     +T    +P
Sbjct: 412 HKGFIWAKSEYGKGSTFTIVLP 433


>gi|169333797|ref|ZP_02860990.1| hypothetical protein ANASTE_00182 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259362|gb|EDS73328.1| hypothetical protein ANASTE_00182 [Anaerofustis stercorihominis DSM
           17244]
          Length = 710

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 127/241 (52%), Gaps = 7/241 (2%)

Query: 556 TEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNSKQSQYVEYISA 615
               +  R+A++ K+SF+ ++S+E+R+PL  I+G   L++ +       K  +Y++    
Sbjct: 321 MMNAKIAREAEQAKSSFLANMSHEIRTPLNGIVGLHYLMRKNIGDK--DKMLEYLKKADV 378

Query: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675
           S+  L ++++D+L+++ +++G +++  + + LN  +N++   I T+  +  +  ++ S+ 
Sbjct: 379 SAEYLKSVISDVLNMSKIESGQIEIYKNDMDLNKFINDIDILIGTQAKDKRLHFEIDSNN 438

Query: 676 KLG-SFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFI---FSVKNNGSSI 730
            +G   + D  RL QI   +L NA+ F+ +  ++ LK  + ++ + +   F++ + G  +
Sbjct: 439 IIGYHIIGDETRLKQIIVNLLGNALKFTPEEGSIFLKIEQAESNNILNTKFTISDTGCGM 498

Query: 731 PEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIPS 790
             +  + ++  F        + G GLG ++ + F+   GG++ + S     TT    IP 
Sbjct: 499 SPEFLEKIWIPFEQERRYNSQNGTGLGTTLSKIFVEKMGGNIEVQSKVNEGTTFIINIPF 558

Query: 791 K 791
           +
Sbjct: 559 E 559


>gi|118443619|ref|YP_877113.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134075|gb|ABK61119.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 470

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 114/245 (46%), Gaps = 3/245 (1%)

Query: 545 VTDSVRAERALTEKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSLNS 604
             +      +     ++L + DE + SF+ +VS+ELRSP+T+I GF   +    +     
Sbjct: 223 NDEIGELATSFNSMAKSLEEVDENRRSFISNVSHELRSPITSIKGFIGGILDGIIPK--E 280

Query: 605 KQSQYVEYISASSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHE 664
           K+  Y+         L  L+ND+LDL+T++AG   LN     +N+++        T +  
Sbjct: 281 KEKYYLSIAYEEIQRLTRLINDLLDLSTIEAGKFVLNMKKEDINEIIRLSIIKFETIIKS 340

Query: 665 NNIRIKVISDGKLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAARDNGDFIFSVK 724
             + ++V  + +    + DR +++Q+ + ++ NA+ +  +   + ++          SV 
Sbjct: 341 KKLNVEVWLEEESVYALVDRDKIIQVITNLIDNAIKYGKEEGNIEIRTKVRGQYIYISVY 400

Query: 725 NNGSSIPEDMCKSVFNRFVSNAHRGQRR-GVGLGLSIVESFINLHGGHVSISSSDEGVTT 783
           N+G +I E+  K +++RF         +   GLGLSIV   +  HGG +   + ++    
Sbjct: 401 NDGPNISEEDGKYIWDRFYKGDKSRTMKVSTGLGLSIVRRIVTKHGGDIWFENKEDKGVK 460

Query: 784 INCRI 788
               +
Sbjct: 461 FIFTL 465


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.146    0.411 

Lambda     K      H
   0.267   0.0449    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,336,893,409
Number of Sequences: 14124377
Number of extensions: 658558906
Number of successful extensions: 2585048
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 81992
Number of HSP's successfully gapped in prelim test: 51727
Number of HSP's that attempted gapping in prelim test: 2118079
Number of HSP's gapped (non-prelim): 206602
length of query: 792
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 645
effective length of database: 2,766,510,211
effective search space: 1784399086095
effective search space used: 1784399086095
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 86 (37.6 bits)